sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3L-AA1B-01 10 124399948 124399948 T C DMBT1 Silent p.Y2316Y 0.17 TCGA-3L-AA1B-01 10 128193330 128193330 C T C10orf90 Missense_Mutation p.V147M 0.28 deleterious(0) probably_damaging(0.999) TCGA-3L-AA1B-01 10 49997997 49997997 C T WDFY4 Missense_Mutation p.R1345W 0.16 deleterious(0) probably_damaging(1) TCGA-3L-AA1B-01 10 6533674 6533674 C A PRKCQ Missense_Mutation p.G254V 0.27 deleterious(0) probably_damaging(0.986) TCGA-3L-AA1B-01 11 103153768 103153768 C T DYNC2H1 Missense_Mutation p.P3622L 0.31 probably_damaging(0.977) TCGA-3L-AA1B-01 11 132289968 132289968 C A OPCML 3'UTR 0.10 TCGA-3L-AA1B-01 11 13984681 13984681 G A SPON1 RNA 0.10 TCGA-3L-AA1B-01 11 2992723 2992723 C T NAP1L4 Silent p.A119A 0.14 TCGA-3L-AA1B-01 11 67223183 67223183 C T CABP4 Missense_Mutation p.H97Y 0.12 tolerated(0.33) possibly_damaging(0.637) TCGA-3L-AA1B-01 11 94113547 94113547 C A GPR83 Missense_Mutation p.W347L 0.18 deleterious(0) probably_damaging(0.976) TCGA-3L-AA1B-01 12 53878884 53878884 G A MAP3K12 Silent p.P365P 0.15 TCGA-3L-AA1B-01 12 55356298 55356298 G T TESPA1 Missense_Mutation p.Q462K 0.32 tolerated_low_confidence(0.11) benign(0.093) TCGA-3L-AA1B-01 12 6438655 6438655 G A TNFRSF1A Silent p.R397R 0.33 TCGA-3L-AA1B-01 13 102029383 102029383 C A NALCN Missense_Mutation p.D134Y 0.28 tolerated(1) possibly_damaging(0.666) TCGA-3L-AA1B-01 13 113803258 113803258 C T F10 Silent p.G298G 0.33 TCGA-3L-AA1B-01 13 20425903 20425903 C T ZMYM5 Missense_Mutation p.E140K 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.81) TCGA-3L-AA1B-01 13 25671891 25671891 C T PABPC3 Missense_Mutation p.R519C 0.26 tolerated(0.17) benign(0) TCGA-3L-AA1B-01 13 28494404 28494404 G C PDX1 Silent p.P43P 0.07 TCGA-3L-AA1B-01 13 39262156 39262156 C T FREM2 Silent p.G225G 0.40 TCGA-3L-AA1B-01 13 50034350 50034350 G A SETDB2 Missense_Mutation p.G42R 0.11 deleterious(0.02) benign(0.103) TCGA-3L-AA1B-01 14 100406458 100406458 G A EML1 3'UTR 0.23 TCGA-3L-AA1B-01 14 23586904 23586904 C T CEBPE Missense_Mutation p.R213H 0.08 deleterious(0) probably_damaging(0.995) TCGA-3L-AA1B-01 14 33204879 33204879 A G AKAP6 Missense_Mutation p.K1055E 0.11 tolerated(0.05) benign(0.196) TCGA-3L-AA1B-01 14 65544658 65544658 G A MAX Missense_Mutation p.R90W 0.36 deleterious(0) probably_damaging(0.92) TCGA-3L-AA1B-01 14 76211869 76211869 C T TTLL5 Missense_Mutation p.R478W 0.20 deleterious(0) possibly_damaging(0.522) TCGA-3L-AA1B-01 14 81297546 81297546 C A CEP128 Missense_Mutation p.V384L 0.20 tolerated(1) benign(0.008) TCGA-3L-AA1B-01 15 101595314 101595314 G T LRRK1 Missense_Mutation p.K1406N 0.12 deleterious(0) probably_damaging(1) TCGA-3L-AA1B-01 15 25222974 25222974 C T SNRPN Missense_Mutation p.A157V 0.28 tolerated(0.12) probably_damaging(0.939) TCGA-3L-AA1B-01 15 32915751 32915751 C T ARHGAP11A Missense_Mutation p.R87W 0.13 deleterious(0) probably_damaging(1) TCGA-3L-AA1B-01 15 35086968 35086968 G A ACTC1 Silent p.N14N 0.31 TCGA-3L-AA1B-01 15 52681499 52681499 C G MYO5A Missense_Mutation p.C535S 0.30 tolerated(1) benign(0.006) TCGA-3L-AA1B-01 15 69331226 69331226 T - NOX5 Frame_Shift_Del p.H470Tfs*10 0.17 TCGA-3L-AA1B-01 15 74032622 74032622 C T C15orf59 Missense_Mutation p.S173N 0.21 tolerated(0.37) benign(0.001) TCGA-3L-AA1B-01 15 78471001 78471001 G A ACSBG1 Missense_Mutation p.R553C 0.26 tolerated(0.09) probably_damaging(0.946) TCGA-3L-AA1B-01 15 79092834 79092834 G A ADAMTS7 Silent p.D52D 0.23 TCGA-3L-AA1B-01 16 1035119 1035119 C T SOX8 Silent p.Y358Y 0.27 TCGA-3L-AA1B-01 16 10837880 10837880 C T NUBP1 Nonsense_Mutation p.Q28* 0.29 TCGA-3L-AA1B-01 16 28914189 28914189 C T ATP2A1 Silent p.L901L 0.17 TCGA-3L-AA1B-01 16 48138091 48138091 G A ABCC12 Silent p.V954V 0.10 TCGA-3L-AA1B-01 16 78064694 78064694 C T CLEC3A Missense_Mutation p.R193C 0.25 deleterious(0.01) benign(0.066) TCGA-3L-AA1B-01 16 89930229 89930229 C T SPIRE2 Missense_Mutation p.P580S 0.18 tolerated(1) benign(0.121) TCGA-3L-AA1B-01 17 1561557 1561557 C T PRPF8 Missense_Mutation p.R1832H 0.16 deleterious(0) probably_damaging(1) TCGA-3L-AA1B-01 17 34252637 34252637 C T RDM1 Missense_Mutation p.R94H 0.11 tolerated(0.24) benign(0.02) TCGA-3L-AA1B-01 17 36871934 36871934 G T MLLT6 Nonsense_Mutation p.E297* 0.16 TCGA-3L-AA1B-01 17 5461748 5461748 G A NLRP1 Silent p.F756F 0.21 TCGA-3L-AA1B-01 17 63221255 63221255 C T RGS9 Missense_Mutation p.R515W 0.40 deleterious_low_confidence(0.05) possibly_damaging(0.719) TCGA-3L-AA1B-01 17 67092867 67092867 C T ABCA6 Missense_Mutation p.V1066I 0.15 tolerated(1) benign(0.015) TCGA-3L-AA1B-01 18 74728839 74728839 G A MBP Silent p.I175I 0.12 TCGA-3L-AA1B-01 18 77624142 77624142 G A KCNG2 Missense_Mutation p.G159S 0.23 tolerated(0.41) benign(0.003) TCGA-3L-AA1B-01 19 13264339 13264339 G A IER2 Silent p.P113P 0.09 TCGA-3L-AA1B-01 19 31039530 31039530 G A ZNF536 Missense_Mutation p.G1002S 0.29 deleterious(0.03) possibly_damaging(0.512) TCGA-3L-AA1B-01 19 38976570 38976570 C A RYR1 Silent p.R1759R 0.22 TCGA-3L-AA1B-01 19 46280822 46280822 G A DMPK Silent p.D313D 0.16 TCGA-3L-AA1B-01 19 51509966 51509966 G A KLK9 Missense_Mutation p.R72C 0.25 deleterious(0.02) probably_damaging(1) TCGA-3L-AA1B-01 19 52714654 52714654 G A PPP2R1A Missense_Mutation p.G138S 0.30 deleterious(0.02) possibly_damaging(0.448) TCGA-3L-AA1B-01 19 52825184 52825184 A G ZNF480 Silent p.V227V 0.04 TCGA-3L-AA1B-01 19 56030360 56030360 G A SSC5D Missense_Mutation p.V1573M 0.18 unknown(0) TCGA-3L-AA1B-01 19 57175661 57175661 G A ZNF835 Silent p.G302G 0.27 TCGA-3L-AA1B-01 1 110173331 110173331 C T AMPD2 Silent p.I782I 0.35 TCGA-3L-AA1B-01 1 110999108 110999108 G A PROK1 3'UTR 0.41 TCGA-3L-AA1B-01 1 115258747 115258747 C T NRAS Missense_Mutation p.G12D 0.23 deleterious(0) possibly_damaging(0.726) TCGA-3L-AA1B-01 1 11561303 11561303 C T PTCHD2 Missense_Mutation p.P85L 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3L-AA1B-01 1 117695902 117695902 C A VTCN1 Missense_Mutation p.V179L 0.04 deleterious(0.02) probably_damaging(0.987) TCGA-3L-AA1B-01 1 1334545 1334545 T A CCNL2 Missense_Mutation p.T48S 0.32 tolerated(0.36) benign(0.113) TCGA-3L-AA1B-01 1 13522170 13522170 G T PRAMEF21 Silent p.L66L 0.12 TCGA-3L-AA1B-01 1 13910316 13910316 G A PDPN Missense_Mutation p.G6R 0.27 tolerated_low_confidence(0.07) probably_damaging(0.991) TCGA-3L-AA1B-01 1 152193429 152193429 C A HRNR Missense_Mutation p.G226C 0.18 unknown(0) TCGA-3L-AA1B-01 1 175372558 175372558 C T TNR Missense_Mutation p.E232K 0.13 tolerated(0.07) benign(0.217) TCGA-3L-AA1B-01 1 198665947 198665947 C A PTPRC Missense_Mutation p.F69L 0.14 deleterious_low_confidence(0.05) benign(0.021) TCGA-3L-AA1B-01 1 200842475 200842475 C T GPR25 Missense_Mutation p.R104C 0.07 deleterious(0.01) possibly_damaging(0.809) TCGA-3L-AA1B-01 1 214557400 214557400 G A PTPN14 Missense_Mutation p.R600W 0.14 deleterious(0) probably_damaging(0.999) TCGA-3L-AA1B-01 1 228493067 228493067 C T OBSCN Missense_Mutation p.S4837L 0.38 benign(0.063) TCGA-3L-AA1B-01 1 24681005 24681005 G A GRHL3 Intron 0.11 TCGA-3L-AA1B-01 1 32159767 32159767 G A COL16A1 Missense_Mutation p.T329I 0.19 unknown(0) TCGA-3L-AA1B-01 1 34076766 34076766 C T CSMD2 Missense_Mutation p.R2033H 0.11 tolerated(0.1) benign(0.045) TCGA-3L-AA1B-01 1 34174743 34174743 C T CSMD2 Silent p.K1134K 0.27 TCGA-3L-AA1B-01 1 3670752 3670752 C T CCDC27 Missense_Mutation p.T130M 0.10 tolerated(0.35) benign(0.047) TCGA-3L-AA1B-01 1 47904316 47904316 C T FOXD2 Missense_Mutation p.A170V 0.12 deleterious(0.02) possibly_damaging(0.573) TCGA-3L-AA1B-01 1 6579560 6579560 G A NOL9 3'Flank 0.31 TCGA-3L-AA1B-01 1 71477949 71477949 C A PTGER3 Intron 0.38 TCGA-3L-AA1B-01 20 29960982 29960982 C A DEFB118 3'UTR 0.42 TCGA-3L-AA1B-01 20 33805744 33805744 C T AL121753.1 3'Flank 0.33 TCGA-3L-AA1B-01 20 37356608 37356608 G A SLC32A1 Missense_Mutation p.D302N 0.33 tolerated(0.12) benign(0.218) TCGA-3L-AA1B-01 20 43926956 43926956 G A MATN4 Missense_Mutation p.A427V 0.10 probably_damaging(0.999) TCGA-3L-AA1B-01 20 57767769 57767769 C T ZNF831 Silent p.A565A 0.31 TCGA-3L-AA1B-01 21 33719373 33719373 G A URB1 Nonsense_Mutation p.Q1254* 0.09 TCGA-3L-AA1B-01 21 47706832 47706832 G T YBEY Missense_Mutation p.S2I 0.07 deleterious(0) possibly_damaging(0.781) TCGA-3L-AA1B-01 22 16266953 16266953 T C POTEH Missense_Mutation p.D499G 0.05 tolerated(0.12) benign(0.057) TCGA-3L-AA1B-01 22 37903860 37903860 C T CARD10 Silent p.E389E 0.15 TCGA-3L-AA1B-01 2 108475922 108475922 C A RGPD4 Missense_Mutation p.L516M 0.23 deleterious(0) possibly_damaging(0.86) TCGA-3L-AA1B-01 2 109086719 109086719 G A GCC2 Missense_Mutation p.D312N 0.09 tolerated(0.11) benign(0.034) TCGA-3L-AA1B-01 2 11750835 11750835 G A GREB1 Silent p.A896A 0.29 TCGA-3L-AA1B-01 2 128750799 128750799 G A SAP130 Missense_Mutation p.P506L 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-3L-AA1B-01 2 136374263 136374263 G A R3HDM1 Missense_Mutation p.R80Q 0.26 deleterious(0) probably_damaging(0.99) TCGA-3L-AA1B-01 2 149226505 149226505 A G MBD5 Silent p.K331K 0.10 TCGA-3L-AA1B-01 2 164466932 164466932 G T FIGN Missense_Mutation p.D470E 0.14 tolerated(1) benign(0.011) TCGA-3L-AA1B-01 2 201846322 201846322 G C FAM126B Missense_Mutation p.L422V 0.11 deleterious(0.04) benign(0.119) TCGA-3L-AA1B-01 2 202483676 202483676 T C ALS2CR11 Missense_Mutation p.T60A 0.32 tolerated(0.76) benign(0.023) TCGA-3L-AA1B-01 2 222429021 222429021 G A EPHA4 Nonsense_Mutation p.R85* 0.26 TCGA-3L-AA1B-01 2 237415902 237415902 G A IQCA1 Silent p.N3N 0.12 TCGA-3L-AA1B-01 2 239039317 239039317 G A ESPNL Silent p.T654T 0.26 TCGA-3L-AA1B-01 2 27356026 27356026 G T PREB Missense_Mutation p.L169I 0.06 tolerated(0.06) benign(0.434) TCGA-3L-AA1B-01 2 3691431 3691431 C T COLEC11 Missense_Mutation p.P194L 0.22 deleterious(0) probably_damaging(1) TCGA-3L-AA1B-01 2 44459528 44459529 - A PPM1B 3'Flank 0.12 TCGA-3L-AA1B-01 2 54483342 54483342 G A TSPYL6 5'UTR 0.14 TCGA-3L-AA1B-01 2 61522332 61522332 G T USP34 Missense_Mutation p.P1450T 0.20 tolerated(0.15) benign(0.04) TCGA-3L-AA1B-01 3 101477203 101477203 C T CEP97 Missense_Mutation p.R585C 0.11 deleterious(0.04) possibly_damaging(0.593) TCGA-3L-AA1B-01 3 112538695 112538695 A G CD200R1L Missense_Mutation p.Y243H 0.16 tolerated(0.06) possibly_damaging(0.825) TCGA-3L-AA1B-01 3 126255181 126255181 C G CHST13 Silent p.L55L 0.10 TCGA-3L-AA1B-01 3 129302435 129302435 C T PLXND1 Missense_Mutation p.R739Q 0.16 tolerated(0.66) benign(0.004) TCGA-3L-AA1B-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-3L-AA1B-01 3 3215927 3215927 C T CRBN Missense_Mutation p.E65K 0.10 deleterious(0.01) possibly_damaging(0.749) TCGA-3L-AA1B-01 3 35763308 35763308 G T ARPP21 Missense_Mutation p.G369W 0.26 deleterious(0) probably_damaging(1) TCGA-3L-AA1B-01 3 42956391 42956391 T C ZNF662 Missense_Mutation p.F302L 0.16 deleterious(0.01) probably_damaging(0.915) TCGA-3L-AA1B-01 3 51264832 51264832 G A DOCK3 Missense_Mutation p.R499Q 0.16 tolerated(0.07) probably_damaging(0.979) TCGA-3L-AA1B-01 3 51751789 51751789 G A GRM2 Missense_Mutation p.R834H 0.19 deleterious(0.05) possibly_damaging(0.816) TCGA-3L-AA1B-01 3 67054170 67054170 C A KBTBD8 Missense_Mutation p.A260D 0.16 tolerated(0.06) benign(0.397) TCGA-3L-AA1B-01 3 9106222 9106222 G A SRGAP3 Missense_Mutation p.A177V 0.18 deleterious(0) possibly_damaging(0.836) TCGA-3L-AA1B-01 4 123185419 123185419 A G KIAA1109 Missense_Mutation p.N2385S 0.12 possibly_damaging(0.471) TCGA-3L-AA1B-01 4 184930364 184930364 C T STOX2 Missense_Mutation p.R125W 0.23 deleterious(0) probably_damaging(0.998) TCGA-3L-AA1B-01 4 2065862 2065862 C T NAT8L 3'UTR 0.18 TCGA-3L-AA1B-01 4 5798801 5798801 C T EVC Missense_Mutation p.R647W 0.14 deleterious(0) probably_damaging(1) TCGA-3L-AA1B-01 4 8229491 8229491 G A SH3TC1 Silent p.R690R 0.18 TCGA-3L-AA1B-01 4 88537505 88537513 AGCAATGAA - DSPP In_Frame_Del p.N1232_S1234del 0.35 TCGA-3L-AA1B-01 4 90856808 90856808 C G MMRN1 Silent p.L659L 0.46 TCGA-3L-AA1B-01 4 90856872 90856872 C T MMRN1 Silent p.L681L 0.41 TCGA-3L-AA1B-01 4 90856967 90856967 C G MMRN1 Silent p.A712A 0.42 TCGA-3L-AA1B-01 4 90857015 90857015 C G MMRN1 Silent p.L728L 0.43 TCGA-3L-AA1B-01 5 10290734 10290734 G A CMBL Silent p.V47V 0.40 TCGA-3L-AA1B-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.43 TCGA-3L-AA1B-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.08 TCGA-3L-AA1B-01 5 140182686 140182686 G A PCDHA3 Missense_Mutation p.R635H 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-3L-AA1B-01 5 141335640 141335640 C T PCDH12 Missense_Mutation p.E593K 0.38 tolerated(0.17) benign(0.322) TCGA-3L-AA1B-01 5 148624466 148624466 G A ABLIM3 Silent p.K458K 0.15 TCGA-3L-AA1B-01 5 158139210 158139210 C T EBF1 Missense_Mutation p.G501S 0.45 tolerated_low_confidence(0.16) benign(0.049) TCGA-3L-AA1B-01 5 167674056 167674056 G A TENM2 Missense_Mutation p.V2038I 0.17 tolerated(0.23) benign(0.172) TCGA-3L-AA1B-01 5 54720592 54720592 T G SKIV2L2 Missense_Mutation p.Y1041D 0.15 deleterious(0) probably_damaging(0.998) TCGA-3L-AA1B-01 5 57790536 57790536 C G GAPT Missense_Mutation p.T58S 0.13 tolerated(0.32) benign(0.008) TCGA-3L-AA1B-01 5 71490850 71490850 C T MAP1B Silent p.S556S 0.17 TCGA-3L-AA1B-01 5 74638539 74638539 T C HMGCR Missense_Mutation p.F37L 0.15 tolerated(0.7) benign(0.002) TCGA-3L-AA1B-01 5 75427983 75427983 G T SV2C Missense_Mutation p.Q136H 0.12 tolerated(0.36) probably_damaging(0.999) TCGA-3L-AA1B-01 5 95115998 95115998 G A RHOBTB3 Missense_Mutation p.C442Y 0.41 tolerated(0.06) probably_damaging(0.998) TCGA-3L-AA1B-01 6 112422015 112422015 C A FAM229B 3'UTR 0.16 TCGA-3L-AA1B-01 6 161528978 161528978 G A MAP3K4 Missense_Mutation p.G1366R 0.09 deleterious(0) probably_damaging(0.999) TCGA-3L-AA1B-01 6 168347574 168347574 C T MLLT4 Silent p.N1175N 0.27 TCGA-3L-AA1B-01 6 33647805 33647805 C T ITPR3 Silent p.A1373A 0.27 TCGA-3L-AA1B-01 6 74078986 74078986 G A OOEP Missense_Mutation p.R105W 0.31 deleterious(0) benign(0.081) TCGA-3L-AA1B-01 7 103252182 103252182 G T RELN Missense_Mutation p.A924E 0.22 tolerated(0.1) possibly_damaging(0.576) TCGA-3L-AA1B-01 7 111375162 111375162 C T DOCK4 Silent p.S1780S 0.23 TCGA-3L-AA1B-01 7 11676479 11676479 C T THSD7A Silent p.K100K 0.20 TCGA-3L-AA1B-01 7 140453146 140453146 G C BRAF Missense_Mutation p.L597V 0.21 deleterious(0) possibly_damaging(0.594) TCGA-3L-AA1B-01 7 150174762 150174762 C T GIMAP8 Missense_Mutation p.S631F 0.10 tolerated(0.7) benign(0.188) TCGA-3L-AA1B-01 7 151945003 151945003 C G KMT2C Missense_Mutation p.R839T 0.08 probably_damaging(0.998) TCGA-3L-AA1B-01 7 2949770 2949770 G A CARD11 Silent p.I1058I 0.40 TCGA-3L-AA1B-01 7 4874822 4874822 G A RADIL Missense_Mutation p.R278W 0.23 deleterious(0) probably_damaging(0.996) TCGA-3L-AA1B-01 8 11281798 11281798 T C FAM167A 3'UTR 0.25 TCGA-3L-AA1B-01 8 144940770 144940770 G C EPPK1 Missense_Mutation p.R2218G 0.09 possibly_damaging(0.587) TCGA-3L-AA1B-01 8 145584276 145584276 C T SLC52A2 Missense_Mutation p.S343F 0.29 deleterious(0.03) benign(0.076) TCGA-3L-AA1B-01 8 23429291 23429291 G A SLC25A37 Missense_Mutation p.A314T 0.12 deleterious(0.02) probably_damaging(0.918) TCGA-3L-AA1B-01 8 67064843 67064843 C T TRIM55 Missense_Mutation p.A406V 0.29 tolerated_low_confidence(0.11) benign(0.003) TCGA-3L-AA1B-01 9 114289967 114289967 G T ZNF483 Nonsense_Mutation p.E98* 0.19 TCGA-3L-AA1B-01 9 139702666 139702666 G T RABL6 Missense_Mutation p.K6N 0.14 deleterious(0) probably_damaging(0.982) TCGA-3L-AA1B-01 9 35091523 35091523 G A PIGO Silent p.P787P 0.29 TCGA-3L-AA1B-01 9 84532974 84532974 C A SPATA31D5P RNA 0.36 TCGA-3L-AA1B-01 9 90501059 90501059 C A SPATA31E1 Missense_Mutation p.Q553K 0.11 deleterious(0.03) possibly_damaging(0.827) TCGA-3L-AA1B-01 X 103267875 103267875 C T H2BFWT Missense_Mutation p.E120K 0.36 tolerated(0.06) benign(0.12) TCGA-3L-AA1B-01 X 107929290 107929290 C T COL4A5 Missense_Mutation p.R1416C 0.24 probably_damaging(0.993) TCGA-3L-AA1B-01 X 109416529 109416529 C T TMEM164 Silent p.Y248Y 0.19 TCGA-3L-AA1B-01 X 112022534 112022534 C A AMOT Missense_Mutation p.A950S 0.11 unknown(0) TCGA-3L-AA1B-01 X 129203447 129203447 C A ELF4 Missense_Mutation p.A339S 0.08 tolerated(0.68) benign(0.006) TCGA-3L-AA1B-01 X 150912333 150912333 G A CNGA2 Missense_Mutation p.R453H 0.34 deleterious(0.01) possibly_damaging(0.808) TCGA-3L-AA1B-01 X 151092635 151092635 G A MAGEA4 Missense_Mutation p.V167M 0.04 tolerated(0.08) benign(0.443) TCGA-3L-AA1B-01 X 152034431 152034431 C T NSDHL Silent p.F204F 0.09 TCGA-3L-AA1B-01 X 30260423 30260423 C A MAGEB4 Silent p.G57G 0.32 TCGA-3L-AA1B-01 X 48935042 48935042 G A WDR45 Intron 0.29 TCGA-3L-AA1B-01 X 54815051 54815051 G A ITIH6 Silent p.I216I 0.15 TCGA-3L-AA1B-01 X 57936020 57936020 C T ZXDA Missense_Mutation p.A279T 0.28 tolerated(0.35) benign(0.071) TCGA-3L-AA1B-01 X 69646754 69646754 G C GDPD2 Missense_Mutation p.V199L 0.05 tolerated(0.19) benign(0.001) TCGA-3L-AA1B-01 X 71493804 71493804 T G RPS4X Silent p.R127R 0.24 TCGA-3L-AA1B-01 X 72434322 72434322 C T NAP1L2 Missense_Mutation p.E3K 0.31 tolerated_low_confidence(0.15) benign(0.019) TCGA-3L-AA1B-01 X 74295398 74295398 G T ABCB7 Silent p.A219A 0.27 TCGA-3L-AA1B-01 X 74742807 74742807 C T ZDHHC15 Missense_Mutation p.R18Q 0.24 deleterious(0.02) probably_damaging(0.954) TCGA-3L-AA1B-01 X 76855290 76855290 C G ATRX Splice_Site p.X1900_splice 0.04 TCGA-4N-A93T-01 10 26446318 26446318 G A MYO3A Missense_Mutation p.R958H 0.44 deleterious(0) probably_damaging(0.99) TCGA-4N-A93T-01 10 28225715 28225715 C T ARMC4 Missense_Mutation p.R731Q 0.42 deleterious(0.03) possibly_damaging(0.871) TCGA-4N-A93T-01 10 28908464 28908464 A C WAC Splice_Site p.X625_splice 0.39 TCGA-4N-A93T-01 10 29812453 29812453 G A SVIL Silent p.D1030D 0.46 TCGA-4N-A93T-01 10 30317557 30317557 T A KIAA1462 Missense_Mutation p.D507V 0.28 deleterious(0) possibly_damaging(0.687) TCGA-4N-A93T-01 10 30317928 30317928 G A KIAA1462 Silent p.S383S 0.35 TCGA-4N-A93T-01 10 30336636 30336636 C A KIAA1462 Missense_Mutation p.G36W 0.41 deleterious(0.01) probably_damaging(0.924) TCGA-4N-A93T-01 10 38344224 38344224 G T ZNF33A Missense_Mutation p.G391V 0.47 deleterious(0.03) probably_damaging(0.933) TCGA-4N-A93T-01 10 47000008 47000008 G A GPRIN2 Silent p.P376P 0.20 TCGA-4N-A93T-01 10 49667836 49667836 G A ARHGAP22 Missense_Mutation p.R200W 0.30 deleterious(0) possibly_damaging(0.766) TCGA-4N-A93T-01 10 49988012 49988012 G A WDFY4 Missense_Mutation p.E1142K 0.45 tolerated(0.52) benign(0.234) TCGA-4N-A93T-01 10 50030426 50030426 C T WDFY4 Silent p.D1942D 0.33 TCGA-4N-A93T-01 10 7409618 7409618 C T SFMBT2 Silent p.P143P 0.38 TCGA-4N-A93T-01 11 103908603 103908603 C T DDI1 Silent p.I351I 0.50 TCGA-4N-A93T-01 11 119535779 119535779 G C PVRL1 Missense_Mutation p.P411R 0.04 deleterious(0.03) benign(0.024) TCGA-4N-A93T-01 11 479126 479126 C T PTDSS2 Silent p.L137L 0.43 TCGA-4N-A93T-01 11 58949471 58949471 C T DTX4 Silent p.L157L 0.41 TCGA-4N-A93T-01 11 59132775 59132775 G T OR5AN1 Missense_Mutation p.V282F 0.36 tolerated(0.09) benign(0.098) TCGA-4N-A93T-01 11 64051784 64051784 C G BAD Missense_Mutation p.E19D 0.46 tolerated_low_confidence(1) benign(0.005) TCGA-4N-A93T-01 11 69063836 69063836 C A MYEOV Missense_Mutation p.L307I 0.43 unknown(0) TCGA-4N-A93T-01 11 86161346 86161346 G A ME3 Silent p.G338G 0.41 TCGA-4N-A93T-01 11 92531653 92531653 C T FAT3 Missense_Mutation p.T1825M 0.37 probably_damaging(0.993) TCGA-4N-A93T-01 12 110206731 110206731 G A FAM222A Missense_Mutation p.V333M 0.29 tolerated(0.17) benign(0.005) TCGA-4N-A93T-01 12 122247977 122247977 G A SETD1B Missense_Mutation p.A376T 0.39 benign(0.066) TCGA-4N-A93T-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.37 deleterious(0) benign(0.361) TCGA-4N-A93T-01 12 40158368 40158368 A C SLC2A13 Silent p.L538L 0.33 TCGA-4N-A93T-01 12 48921862 48921862 C T OR8S1 Silent p.R352R 0.37 TCGA-4N-A93T-01 12 53714388 53714388 T C AAAS Missense_Mutation p.H71R 0.40 tolerated(0.09) benign(0.067) TCGA-4N-A93T-01 12 7890057 7890057 C T CLEC4C Missense_Mutation p.D117N 0.38 deleterious(0.03) benign(0.016) TCGA-4N-A93T-01 12 88505545 88505545 A G CEP290 Silent p.L715L 0.05 TCGA-4N-A93T-01 13 114149842 114149842 G A TMCO3 5'UTR 0.36 TCGA-4N-A93T-01 13 20240645 20240645 G T MPHOSPH8 Missense_Mutation p.Q700H 0.07 deleterious(0.02) probably_damaging(0.975) TCGA-4N-A93T-01 13 46115659 46115659 C T FAM194B Missense_Mutation p.V677I 0.55 tolerated(0.43) benign(0.01) TCGA-4N-A93T-01 14 24781070 24781070 A G LTB4R2 3'UTR 0.64 TCGA-4N-A93T-01 14 32561448 32561448 G T ARHGAP5 Nonsense_Mutation p.E525* 0.53 TCGA-4N-A93T-01 14 45584072 45584072 A T PRPF39 Missense_Mutation p.N656Y 0.06 deleterious(0.05) benign(0.007) TCGA-4N-A93T-01 14 45603717 45603717 C A FKBP3 5'UTR 0.65 TCGA-4N-A93T-01 14 73538420 73538420 C T RBM25 Missense_Mutation p.P24L 0.06 probably_damaging(0.958) TCGA-4N-A93T-01 14 93688699 93688699 G T UBR7 Missense_Mutation p.K388N 0.04 deleterious(0.01) possibly_damaging(0.632) TCGA-4N-A93T-01 15 36871989 36871989 C T C15orf41 5'UTR 0.89 TCGA-4N-A93T-01 15 43552355 43552355 C A TGM5 Missense_Mutation p.A111S 0.73 deleterious(0.02) benign(0.088) TCGA-4N-A93T-01 15 68486288 68486288 C A CALML4 3'UTR 0.12 TCGA-4N-A93T-01 16 31075284 31075284 C T ZNF668 Missense_Mutation p.R189Q 0.36 deleterious(0.01) probably_damaging(0.949) TCGA-4N-A93T-01 16 52473598 52473598 C A TOX3 Missense_Mutation p.V424F 0.41 deleterious_low_confidence(0) possibly_damaging(0.755) TCGA-4N-A93T-01 16 597420 597420 C T CAPN15 Silent p.H194H 0.37 TCGA-4N-A93T-01 16 67904759 67904759 C T NUTF2 Silent p.N109N 0.43 TCGA-4N-A93T-01 16 68380137 68380137 T C PRMT7 Missense_Mutation p.I382T 0.53 deleterious(0) benign(0.12) TCGA-4N-A93T-01 16 71570892 71570892 C T CHST4 Silent p.C104C 0.35 TCGA-4N-A93T-01 16 7568238 7568238 G A RBFOX1 Silent p.A59A 0.44 TCGA-4N-A93T-01 16 81248792 81248792 G C PKD1L2 Silent p.G157G 0.44 TCGA-4N-A93T-01 16 88782469 88782475 CCCCGCA - PIEZO1 Frame_Shift_Del p.A2395Pfs*117 0.31 TCGA-4N-A93T-01 17 19646773 19646773 C A ALDH3A1 Nonsense_Mutation p.E56* 0.09 TCGA-4N-A93T-01 17 26943411 26943411 G A KIAA0100 Missense_Mutation p.R2092C 0.41 deleterious(0) probably_damaging(0.976) TCGA-4N-A93T-01 17 28783529 28783529 C A CPD Missense_Mutation p.H1161Q 0.40 tolerated(0.07) probably_damaging(0.998) TCGA-4N-A93T-01 17 59112099 59112099 C A BCAS3 Missense_Mutation p.F585L 0.48 deleterious(0) probably_damaging(0.998) TCGA-4N-A93T-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.69 tolerated(0.13) possibly_damaging(0.631) TCGA-4N-A93T-01 17 76528586 76528586 G T DNAH17 Missense_Mutation p.T1031N 0.51 benign(0.005) TCGA-4N-A93T-01 17 80422305 80422305 A C NARF Missense_Mutation p.K84T 0.33 deleterious(0.02) possibly_damaging(0.764) TCGA-4N-A93T-01 18 10689743 10689743 C T PIEZO2 Silent p.T2356T 0.76 TCGA-4N-A93T-01 18 28666671 28666671 T C DSC2 Silent p.K270K 0.08 TCGA-4N-A93T-01 19 1275733 1275733 C A C19orf24 Missense_Mutation p.P62Q 0.65 tolerated(0.11) probably_damaging(0.943) TCGA-4N-A93T-01 19 15079198 15079198 G A SLC1A6 Silent p.P155P 0.42 TCGA-4N-A93T-01 19 15349589 15349589 G A BRD4 Missense_Mutation p.R1329W 0.47 possibly_damaging(0.689) TCGA-4N-A93T-01 19 18705189 18705189 C G CRLF1 Silent p.S360S 0.50 TCGA-4N-A93T-01 19 35849909 35849909 C T FFAR3 Silent p.F39F 0.19 TCGA-4N-A93T-01 19 49224179 49224179 C T RASIP1 Missense_Mutation p.G923D 0.32 tolerated(0.37) benign(0.062) TCGA-4N-A93T-01 19 51890494 51890494 G A LIM2 Silent p.R68R 0.32 TCGA-4N-A93T-01 19 56329577 56329577 A G NLRP11 5'UTR 0.54 TCGA-4N-A93T-01 19 6418833 6418834 - G KHSRP Frame_Shift_Ins p.G221Rfs*37 0.26 TCGA-4N-A93T-01 19 8399533 8399533 G A KANK3 Missense_Mutation p.A393V 0.21 tolerated(0.31) possibly_damaging(0.736) TCGA-4N-A93T-01 1 120839624 120839624 G A FAM72B 5'UTR 0.05 TCGA-4N-A93T-01 1 145328410 145328410 G T NBPF10 Missense_Mutation p.D1420Y 0.11 possibly_damaging(0.883) TCGA-4N-A93T-01 1 154309963 154309963 C T ATP8B2 Missense_Mutation p.S359F 0.38 tolerated(0.12) benign(0.313) TCGA-4N-A93T-01 1 156884639 156884639 C T PEAR1 3'UTR 0.38 TCGA-4N-A93T-01 1 181708389 181708389 C T CACNA1E Missense_Mutation p.A1240V 0.33 deleterious(0) probably_damaging(0.953) TCGA-4N-A93T-01 1 183907689 183907689 G A COLGALT2 3'UTR 0.40 TCGA-4N-A93T-01 1 186063431 186063431 A T HMCN1 Missense_Mutation p.D3407V 0.42 probably_damaging(0.999) TCGA-4N-A93T-01 1 201980427 201980427 G A ELF3 Missense_Mutation p.E55K 0.46 tolerated(0.25) possibly_damaging(0.827) TCGA-4N-A93T-01 1 208215489 208215489 C T PLXNA2 Missense_Mutation p.D1414N 0.54 deleterious(0) benign(0.089) TCGA-4N-A93T-01 1 233394713 233394713 C - PCNXL2 Frame_Shift_Del p.V299Yfs*10 0.29 TCGA-4N-A93T-01 1 247582194 247582194 C T NLRP3 Missense_Mutation p.P33L 0.54 deleterious(0.01) probably_damaging(1) TCGA-4N-A93T-01 1 34666491 34666491 C T C1orf94 Silent p.T376T 0.67 TCGA-4N-A93T-01 1 35885222 35885246 CATGAAGAACTTGCCAAAGCCAAAT GA ZMYM4 Frame_Shift_Del p.H1531Dfs*2 0.19 TCGA-4N-A93T-01 1 53370323 53370323 G T ECHDC2 Missense_Mutation p.P233T 0.08 deleterious(0.05) probably_damaging(0.986) TCGA-4N-A93T-01 1 53527918 53527918 G A PODN Silent p.A9A 0.71 TCGA-4N-A93T-01 20 17475195 17475195 C T BFSP1 Missense_Mutation p.G508S 0.23 tolerated(0.67) benign(0.011) TCGA-4N-A93T-01 20 44639925 44639925 G A MMP9 Missense_Mutation p.D265N 0.19 deleterious(0) possibly_damaging(0.697) TCGA-4N-A93T-01 21 10906857 10906857 G A TPTE 3'UTR 0.15 TCGA-4N-A93T-01 21 19701535 19701535 G A TMPRSS15 Silent p.N577N 0.40 TCGA-4N-A93T-01 21 34399578 34399578 G A OLIG2 Silent p.P136P 0.34 TCGA-4N-A93T-01 22 28397410 28397410 G A TTC28 Silent p.F1450F 0.62 TCGA-4N-A93T-01 2 1668751 1668751 C T PXDN Missense_Mutation p.V463I 0.28 tolerated(0.12) possibly_damaging(0.495) TCGA-4N-A93T-01 2 175436264 175436264 G A WIPF1 Intron 0.34 TCGA-4N-A93T-01 2 211069399 211069399 G A ACADL Missense_Mutation p.A259V 0.36 deleterious(0.01) benign(0.128) TCGA-4N-A93T-01 2 218686561 218686561 G A TNS1 Silent p.A1054A 0.36 TCGA-4N-A93T-01 2 240985388 240985388 G A OR6B3 Silent p.T34T 0.60 TCGA-4N-A93T-01 2 25505145 25505145 C T DNMT3A Intron 0.46 TCGA-4N-A93T-01 2 71795108 71795108 C A DYSF Silent p.R865R 0.34 TCGA-4N-A93T-01 2 97217099 97217099 G C ARID5A Missense_Mutation p.E278D 0.45 tolerated(0.07) benign(0.053) TCGA-4N-A93T-01 3 113375860 113375860 G T KIAA2018 Missense_Mutation p.P1557T 0.34 possibly_damaging(0.835) TCGA-4N-A93T-01 3 148880655 148880655 C T HPS3 Missense_Mutation p.S824L 0.45 tolerated(0.11) probably_damaging(0.947) TCGA-4N-A93T-01 3 38136552 38136552 C A DLEC1 Missense_Mutation p.S701Y 0.41 deleterious(0.01) possibly_damaging(0.891) TCGA-4N-A93T-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.85 deleterious(0) probably_damaging(0.954) TCGA-4N-A93T-01 3 45988783 45988783 C A CXCR6 Silent p.I270I 0.26 TCGA-4N-A93T-01 3 46718502 46718502 C T ALS2CL Missense_Mutation p.V590M 0.33 tolerated(0.12) benign(0.148) TCGA-4N-A93T-01 3 51812970 51812970 C T IQCF6 5'UTR 0.43 TCGA-4N-A93T-01 3 71821895 71821895 T G PROK2 Missense_Mutation p.I124L 0.47 tolerated(0.07) benign(0.016) TCGA-4N-A93T-01 3 8794706 8794706 C T OXTR Missense_Mutation p.R376H 0.51 tolerated(0.23) unknown(0) TCGA-4N-A93T-01 4 115997643 115997643 G T NDST4 Missense_Mutation p.L184I 0.76 tolerated(0.33) benign(0.145) TCGA-4N-A93T-01 4 16504527 16504527 A C LDB2 Intron 0.74 TCGA-4N-A93T-01 5 109153067 109153067 A G MAN2A1 Silent p.S679S 0.38 TCGA-4N-A93T-01 5 113698498 113698498 G A KCNN2 Missense_Mutation p.G9D 0.09 tolerated_low_confidence(0.08) probably_damaging(0.986) TCGA-4N-A93T-01 5 127782192 127782192 T C FBN2 Missense_Mutation p.T312A 0.41 tolerated(0.46) benign(0) TCGA-4N-A93T-01 5 132151857 132151857 A T SOWAHA 3'UTR 0.36 TCGA-4N-A93T-01 5 140516500 140516500 C A PCDHB5 Missense_Mutation p.P495Q 0.53 deleterious_low_confidence(0.04) benign(0.019) TCGA-4N-A93T-01 5 149360216 149360216 G T SLC26A2 Nonsense_Mutation p.E354* 0.34 TCGA-4N-A93T-01 5 17276812 17276812 C A BASP1 3'UTR 0.53 TCGA-4N-A93T-01 5 177548135 177548135 C T N4BP3 Silent p.L297L 0.25 TCGA-4N-A93T-01 5 35654760 35654760 C T SPEF2 Nonsense_Mutation p.R304* 0.42 TCGA-4N-A93T-01 5 36961602 36961602 G T NIPBL Missense_Mutation p.Q125H 0.38 deleterious(0.02) possibly_damaging(0.789) TCGA-4N-A93T-01 5 36985803 36985803 C T NIPBL Nonsense_Mutation p.R841* 0.36 TCGA-4N-A93T-01 5 74032784 74032784 T C GFM2 Silent p.S449S 0.45 TCGA-4N-A93T-01 6 33245209 33245209 C T B3GALT4 Missense_Mutation p.L5F 0.13 tolerated(0.24) unknown(0) TCGA-4N-A93T-01 6 34835316 34835316 C - UHRF1BP1 Frame_Shift_Del p.L1215Cfs*6 0.28 TCGA-4N-A93T-01 6 37606390 37606390 C T MDGA1 Missense_Mutation p.A864T 0.07 deleterious(0.03) benign(0.284) TCGA-4N-A93T-01 6 44226935 44226935 G T NFKBIE 3'UTR 0.39 TCGA-4N-A93T-01 6 97247750 97247750 C T GPR63 5'UTR 0.36 TCGA-4N-A93T-01 7 127239557 127239557 G A FSCN3 Missense_Mutation p.D415N 0.38 deleterious(0.02) benign(0.064) TCGA-4N-A93T-01 7 132069732 132069732 C T PLXNA4 Intron 0.38 TCGA-4N-A93T-01 7 138602856 138602856 C T KIAA1549 Missense_Mutation p.G506S 0.08 tolerated(0.7) benign(0.021) TCGA-4N-A93T-01 7 19035735 19035735 C - HDAC9 3'Flank 0.22 TCGA-4N-A93T-01 7 2962850 2962850 G A CARD11 Silent p.N686N 0.58 TCGA-4N-A93T-01 8 120631536 120631536 G T ENPP2 Missense_Mutation p.H143N 0.06 tolerated(0.19) benign(0.268) TCGA-4N-A93T-01 8 144943054 144943054 G A EPPK1 Silent p.P1456P 0.48 TCGA-4N-A93T-01 8 77617263 77617263 A G ZFHX4 Missense_Mutation p.S314G 0.48 benign(0) TCGA-4N-A93T-01 8 82371411 82371411 G A FABP9 Missense_Mutation p.R79W 0.33 deleterious(0) probably_damaging(1) TCGA-4N-A93T-01 9 130494820 130494820 G A TOR2A Intron 0.27 TCGA-4N-A93T-01 9 133748310 133748310 T C ABL1 Missense_Mutation p.L343P 0.05 deleterious(0) probably_damaging(1) TCGA-4N-A93T-01 9 135458035 135458035 G A BARHL1 5'UTR 0.31 TCGA-4N-A93T-01 9 137623972 137623972 C T COL5A1 Missense_Mutation p.P463L 0.42 probably_damaging(0.998) TCGA-4N-A93T-01 9 39100022 39100022 G A CNTNAP3 Missense_Mutation p.H961Y 0.41 tolerated(0.07) probably_damaging(0.989) TCGA-4N-A93T-01 9 77746730 77746730 G T OSTF1 Missense_Mutation p.A81S 0.27 tolerated(0.09) possibly_damaging(0.626) TCGA-4N-A93T-01 9 916825 916825 G A DMRT1 Silent p.P295P 0.35 TCGA-4N-A93T-01 X 102529121 102529121 G A TCEAL5 Missense_Mutation p.T124M 0.09 tolerated(0.11) possibly_damaging(0.73) TCGA-4N-A93T-01 X 104463771 104463771 G T TEX13A Missense_Mutation p.Q369K 0.67 tolerated(0.15) benign(0.292) TCGA-4N-A93T-01 X 114426499 114426499 G A RBMXL3 Missense_Mutation p.G832D 0.89 tolerated_low_confidence(0.68) probably_damaging(0.931) TCGA-4N-A93T-01 X 125955380 125955380 G A CXorf64 Silent p.P253P 0.85 TCGA-4N-A93T-01 X 129168520 129168520 C T BCORL1 Intron 0.87 TCGA-4N-A93T-01 X 7267987 7267987 C T STS Silent p.N479N 0.07 TCGA-4T-AA8H-01 10 106139971 106139971 C T CCDC147 Missense_Mutation p.T453M 0.20 tolerated(0.21) benign(0.144) TCGA-4T-AA8H-01 10 27537146 27537146 T C RP11-85G18.6 Intron 0.35 TCGA-4T-AA8H-01 10 55955621 55955621 G C PCDH15 Missense_Mutation p.P376R 0.35 tolerated(0.11) probably_damaging(0.986) TCGA-4T-AA8H-01 10 64893262 64893262 T G NRBF2 Splice_Site p.X10_splice 0.19 TCGA-4T-AA8H-01 10 98386542 98386543 GG - PIK3AP1 Frame_Shift_Del p.P531Cfs*18 0.25 TCGA-4T-AA8H-01 10 98762697 98762697 G A SLIT1 Silent p.N1306N 0.05 TCGA-4T-AA8H-01 11 1010669 1010669 C T AP2A2 3'UTR 0.10 TCGA-4T-AA8H-01 11 111473214 111473214 C T SIK2 5'UTR 0.60 TCGA-4T-AA8H-01 11 35456348 35456348 G A PAMR1 Silent p.C463C 0.07 TCGA-4T-AA8H-01 11 45277338 45277338 G A SYT13 Silent p.N96N 0.21 TCGA-4T-AA8H-01 11 66130917 66130917 G A SLC29A2 Missense_Mutation p.A454V 0.24 tolerated(0.13) probably_damaging(0.996) TCGA-4T-AA8H-01 11 76874008 76874008 C T MYO7A Missense_Mutation p.A555V 0.22 deleterious(0) probably_damaging(0.999) TCGA-4T-AA8H-01 11 788451 788451 C T CEND1 Silent p.K42K 0.23 TCGA-4T-AA8H-01 11 8284932 8284932 G A LMO1 5'UTR 0.17 TCGA-4T-AA8H-01 12 100042097 100042097 G A FAM71C Missense_Mutation p.D49N 0.20 tolerated(0.07) benign(0.288) TCGA-4T-AA8H-01 12 107371374 107371374 T C MTERFD3 Silent p.P373P 0.08 TCGA-4T-AA8H-01 12 22797293 22797293 A - ETNK1 Intron 0.12 TCGA-4T-AA8H-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.60 deleterious(0) possibly_damaging(0.479) TCGA-4T-AA8H-01 12 4554662 4554662 G A FGF6 Silent p.L25L 0.12 TCGA-4T-AA8H-01 12 48547298 48547298 C T ASB8 5'UTR 0.19 TCGA-4T-AA8H-01 13 113838696 113838696 C T PCID2 Missense_Mutation p.G271R 0.15 deleterious(0) probably_damaging(0.999) TCGA-4T-AA8H-01 13 115090693 115090695 CTC - CHAMP1 In_Frame_Del p.P460del 0.13 TCGA-4T-AA8H-01 13 31232297 31232297 G T USPL1 Nonsense_Mutation p.E695* 0.07 TCGA-4T-AA8H-01 13 80910692 80910692 C T SPRY2 3'UTR 0.21 TCGA-4T-AA8H-01 13 95673928 95673928 G A ABCC4 Silent p.F1293F 0.14 TCGA-4T-AA8H-01 14 101349859 101349859 C T RTL1 Missense_Mutation p.V423I 0.26 tolerated(0.16) benign(0.072) TCGA-4T-AA8H-01 14 106471658 106471658 G C IGHV1-3 Silent p.L8L 0.24 TCGA-4T-AA8H-01 14 51087379 51087379 A G ATL1 Missense_Mutation p.S309G 0.23 deleterious(0) benign(0.033) TCGA-4T-AA8H-01 14 51464663 51464663 A C TRIM9 Intron 0.17 TCGA-4T-AA8H-01 14 64554459 64554459 C T SYNE2 Missense_Mutation p.S3852L 0.22 probably_damaging(0.999) TCGA-4T-AA8H-01 14 74727313 74727313 G A VSX2 Silent p.S259S 0.05 TCGA-4T-AA8H-01 15 22868923 22868923 G A TUBGCP5 Missense_Mutation p.R932K 0.21 tolerated(0.14) benign(0.14) TCGA-4T-AA8H-01 15 51830504 51830504 C T DMXL2 Silent p.K417K 0.23 TCGA-4T-AA8H-01 15 69548197 69548197 G A GLCE Missense_Mutation p.A18T 0.26 tolerated(0.21) benign(0.001) TCGA-4T-AA8H-01 15 89760476 89760476 G A RLBP1 Missense_Mutation p.A74V 0.65 tolerated(0.45) benign(0.138) TCGA-4T-AA8H-01 15 91029283 91029283 G A IQGAP1 Missense_Mutation p.A1315T 0.19 tolerated(0.14) benign(0.017) TCGA-4T-AA8H-01 16 46771896 46771896 G T MYLK3 Missense_Mutation p.P243H 0.29 deleterious(0.02) benign(0.023) TCGA-4T-AA8H-01 16 48174743 48174743 G T ABCC12 Missense_Mutation p.A171D 0.18 tolerated(0.06) possibly_damaging(0.477) TCGA-4T-AA8H-01 16 70176177 70176177 G A PDPR Silent p.Q452Q 0.06 TCGA-4T-AA8H-01 16 70867826 70867826 C T HYDIN Missense_Mutation p.R4548H 0.26 probably_damaging(0.923) TCGA-4T-AA8H-01 16 84256426 84256426 G A KCNG4 Silent p.D319D 0.23 TCGA-4T-AA8H-01 17 20406488 20406488 C T RP11-434D2.7 3'Flank 0.29 TCGA-4T-AA8H-01 17 40321521 40321521 C T KCNH4 Missense_Mutation p.V522I 0.13 tolerated(0.14) benign(0.001) TCGA-4T-AA8H-01 17 40384152 40384152 C T STAT5B 5'UTR 0.20 TCGA-4T-AA8H-01 17 40860064 40860064 G A EZH1 Silent p.C524C 0.23 TCGA-4T-AA8H-01 17 48735529 48735529 G A ABCC3 Silent p.R191R 0.16 TCGA-4T-AA8H-01 17 56833264 56833264 C T PPM1E 5'UTR 0.33 TCGA-4T-AA8H-01 17 72209728 72209728 T C TTYH2 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-4T-AA8H-01 18 12254770 12254770 C T CIDEA Intron 0.06 TCGA-4T-AA8H-01 18 2589231 2589231 G A NDC80 Silent p.K264K 0.05 TCGA-4T-AA8H-01 18 5291590 5291590 C A ZBTB14 Missense_Mutation p.G206V 0.22 deleterious(0.02) benign(0.086) TCGA-4T-AA8H-01 19 1255510 1255510 G A MIDN Missense_Mutation p.A316T 0.19 deleterious(0) benign(0.006) TCGA-4T-AA8H-01 19 18543980 18543980 C T SSBP4 Silent p.A316A 0.19 TCGA-4T-AA8H-01 19 30104870 30104870 C T POP4 Missense_Mutation p.R173C 0.16 deleterious(0.04) benign(0.035) TCGA-4T-AA8H-01 19 4099234 4099234 G A MAP2K2 Missense_Mutation p.S295L 0.21 tolerated(0.07) benign(0.014) TCGA-4T-AA8H-01 19 47259184 47259184 G A FKRP Silent p.P159P 0.22 TCGA-4T-AA8H-01 19 49573201 49573201 C T KCNA7 3'UTR 0.27 TCGA-4T-AA8H-01 19 54695181 54695181 C T TSEN34 Intron 0.15 TCGA-4T-AA8H-01 19 55494465 55494465 C T NLRP2 Nonsense_Mutation p.R467* 0.16 TCGA-4T-AA8H-01 19 56477587 56477587 G A NLRP8 Missense_Mutation p.R741H 0.26 tolerated(0.55) benign(0.005) TCGA-4T-AA8H-01 19 57868487 57868487 G C ZNF304 Missense_Mutation p.R417T 0.21 deleterious(0) probably_damaging(0.999) TCGA-4T-AA8H-01 19 8398939 8398939 C T KANK3 Missense_Mutation p.A497T 0.26 tolerated(0.46) possibly_damaging(0.695) TCGA-4T-AA8H-01 19 8550543 8550543 C T HNRNPM Missense_Mutation p.L411F 0.18 tolerated(0.57) benign(0.07) TCGA-4T-AA8H-01 19 9407347 9407347 G A ZNF699 Missense_Mutation p.P245S 0.16 tolerated(0.47) possibly_damaging(0.459) TCGA-4T-AA8H-01 1 11589656 11589656 C T PTCHD2 Missense_Mutation p.R948C 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-4T-AA8H-01 1 116283372 116283372 C T CASQ2 Missense_Mutation p.V133I 0.30 deleterious(0.01) benign(0.099) TCGA-4T-AA8H-01 1 12888418 12888418 C T PRAMEF11 Missense_Mutation p.E36K 0.24 tolerated(0.32) possibly_damaging(0.661) TCGA-4T-AA8H-01 1 155217339 155217339 G A FAM189B 3'UTR 0.29 TCGA-4T-AA8H-01 1 158592868 158592868 G A SPTA1 Missense_Mutation p.R2009C 0.41 deleterious(0) probably_damaging(0.976) TCGA-4T-AA8H-01 1 158605794 158605794 C T SPTA1 Missense_Mutation p.D1781N 0.12 tolerated(0.13) probably_damaging(0.998) TCGA-4T-AA8H-01 1 161166556 161166556 C T ADAMTS4 Missense_Mutation p.A250T 0.27 deleterious(0.05) benign(0.034) TCGA-4T-AA8H-01 1 180148008 180148008 C A QSOX1 Missense_Mutation p.L199M 0.33 deleterious(0.01) possibly_damaging(0.822) TCGA-4T-AA8H-01 1 196759048 196759048 G A CFHR3 Intron 0.16 TCGA-4T-AA8H-01 1 205498784 205498784 C T CDK18 Intron 0.45 TCGA-4T-AA8H-01 1 220826523 220826523 G A MARK1 Missense_Mutation p.R606Q 0.21 deleterious(0.01) possibly_damaging(0.804) TCGA-4T-AA8H-01 1 228399731 228399731 C T OBSCN Missense_Mutation p.R83C 0.23 probably_damaging(0.988) TCGA-4T-AA8H-01 1 228400433 228400433 G A OBSCN Missense_Mutation p.V317M 0.22 probably_damaging(0.938) TCGA-4T-AA8H-01 1 25825168 25825168 C T TMEM57 3'UTR 0.24 TCGA-4T-AA8H-01 1 32196453 32196453 C T BAI2 Missense_Mutation p.R1443Q 0.09 tolerated(0.52) probably_damaging(0.996) TCGA-4T-AA8H-01 1 3397025 3397025 C A ARHGEF16 Silent p.G668G 0.19 TCGA-4T-AA8H-01 1 43213947 43213947 C T LEPRE1 Missense_Mutation p.V588M 0.19 deleterious(0) probably_damaging(0.947) TCGA-4T-AA8H-01 1 7725068 7725068 C T CAMTA1 Missense_Mutation p.L821F 0.20 deleterious_low_confidence(0.02) benign(0.046) TCGA-4T-AA8H-01 1 78044476 78044476 A G ZZZ3 Missense_Mutation p.Y721H 0.38 tolerated(0.5) probably_damaging(0.988) TCGA-4T-AA8H-01 1 78958477 78958477 C - PTGFR Frame_Shift_Del p.L17Ffs*18 0.15 TCGA-4T-AA8H-01 1 79385879 79385879 T G ELTD1 Missense_Mutation p.N484H 0.16 deleterious(0.03) possibly_damaging(0.828) TCGA-4T-AA8H-01 20 13054996 13054996 G T SPTLC3 Splice_Site p.X153_splice 0.19 TCGA-4T-AA8H-01 20 30053390 30053390 C A DEFB124 Missense_Mutation p.M45I 0.26 tolerated_low_confidence(0.3) benign(0.138) TCGA-4T-AA8H-01 20 33026392 33026392 C T ITCH Missense_Mutation p.P253L 0.25 tolerated(0.15) probably_damaging(0.999) TCGA-4T-AA8H-01 21 14982817 14982817 T C POTED Missense_Mutation p.F90L 0.33 deleterious_low_confidence(0.04) benign(0.019) TCGA-4T-AA8H-01 22 21385432 21385432 C T SLC7A4 Missense_Mutation p.A224T 0.33 tolerated(0.54) benign(0.037) TCGA-4T-AA8H-01 22 28503114 28503114 C T TTC28 Missense_Mutation p.A907T 0.09 deleterious(0) probably_damaging(0.966) TCGA-4T-AA8H-01 22 50720089 50720089 G A PLXNB2 Missense_Mutation p.T1143M 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-4T-AA8H-01 22 50904834 50904834 G A SBF1 Missense_Mutation p.R245W 0.23 deleterious(0) probably_damaging(1) TCGA-4T-AA8H-01 2 136360083 136360083 A G R3HDM1 5'UTR 0.41 TCGA-4T-AA8H-01 2 187529899 187529899 G A ITGAV Missense_Mutation p.R707H 0.13 deleterious(0.01) benign(0.075) TCGA-4T-AA8H-01 2 206608085 206608085 G A NRP2 Missense_Mutation p.G484S 0.22 tolerated(0.28) probably_damaging(0.999) TCGA-4T-AA8H-01 2 208425038 208425038 G C CREB1 Missense_Mutation p.G68A 0.20 deleterious(0.04) possibly_damaging(0.786) TCGA-4T-AA8H-01 2 210574888 210574888 G T MAP2 Silent p.R1661R 0.16 TCGA-4T-AA8H-01 2 210742786 210742786 G T UNC80 Missense_Mutation p.D1319Y 0.19 probably_damaging(0.998) TCGA-4T-AA8H-01 2 216295459 216295459 G A FN1 Missense_Mutation p.R222C 0.19 deleterious(0) probably_damaging(0.961) TCGA-4T-AA8H-01 2 227729833 227729833 G A RHBDD1 Missense_Mutation p.G142S 0.26 deleterious(0) probably_damaging(1) TCGA-4T-AA8H-01 2 230914504 230914504 G A SLC16A14 Missense_Mutation p.L126F 0.48 deleterious(0) probably_damaging(0.997) TCGA-4T-AA8H-01 2 233546386 233546386 G A EFHD1 Missense_Mutation p.R226H 0.14 deleterious(0.01) benign(0.391) TCGA-4T-AA8H-01 2 55130237 55130237 G A EML6 Missense_Mutation p.D1061N 0.24 tolerated(0.22) benign(0.385) TCGA-4T-AA8H-01 2 5837203 5837203 G A SOX11 3'UTR 0.42 TCGA-4T-AA8H-01 3 108572524 108572524 C T TRAT1 Missense_Mutation p.R121C 0.12 tolerated(0.24) benign(0.016) TCGA-4T-AA8H-01 3 113005664 113005664 G C BOC Silent p.G1100G 0.35 TCGA-4T-AA8H-01 3 118906736 118906736 G A UPK1B Missense_Mutation p.G62S 0.55 tolerated(0.1) possibly_damaging(0.547) TCGA-4T-AA8H-01 3 121208375 121208375 C T POLQ Missense_Mutation p.E1135K 0.12 tolerated_low_confidence(0.13) benign(0.025) TCGA-4T-AA8H-01 3 138664301 138664301 C T FOXL2 3'UTR 0.53 TCGA-4T-AA8H-01 3 140785119 140785119 C T SPSB4 Missense_Mutation p.P58L 0.05 deleterious(0.01) benign(0.251) TCGA-4T-AA8H-01 3 142682103 142682103 C T PAQR9 Missense_Mutation p.A26T 0.11 tolerated_low_confidence(0.16) possibly_damaging(0.499) TCGA-4T-AA8H-01 3 14712508 14712508 G T CCDC174 Missense_Mutation p.G404V 0.25 tolerated(0.06) probably_damaging(0.972) TCGA-4T-AA8H-01 3 194080580 194080580 T A LRRC15 Missense_Mutation p.N404I 0.26 deleterious(0) probably_damaging(0.934) TCGA-4T-AA8H-01 3 51417558 51417558 C A DOCK3 Missense_Mutation p.H1835N 0.47 tolerated_low_confidence(0.21) benign(0.034) TCGA-4T-AA8H-01 4 10447532 10447532 G A ZNF518B Nonsense_Mutation p.R141* 0.24 TCGA-4T-AA8H-01 4 186548067 186548067 G A SORBS2 Nonsense_Mutation p.R381* 0.23 TCGA-4T-AA8H-01 4 30724392 30724392 C T PCDH7 Nonsense_Mutation p.R450* 0.26 TCGA-4T-AA8H-01 4 7844964 7844964 G A AFAP1 Silent p.L150L 0.47 TCGA-4T-AA8H-01 4 79417972 79417972 C T FRAS1 Missense_Mutation p.T2991M 0.23 probably_damaging(0.934) TCGA-4T-AA8H-01 4 8609110 8609110 C T CPZ Silent p.H395H 0.18 TCGA-4T-AA8H-01 5 112174112 112174112 G T APC Nonsense_Mutation p.E941* 0.25 TCGA-4T-AA8H-01 5 112175756 112175757 - TA APC Frame_Shift_Ins p.H1490Yfs*18 0.32 TCGA-4T-AA8H-01 5 115782368 115782368 G A SEMA6A Missense_Mutation p.P1012S 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-4T-AA8H-01 5 126887198 126887198 T A PRRC1 Intron 0.41 TCGA-4T-AA8H-01 5 140871147 140871147 G A PCDHGC5 Silent p.P780P 0.17 TCGA-4T-AA8H-01 5 1494950 1494950 G A LPCAT1 Missense_Mutation p.R120W 0.27 deleterious(0) probably_damaging(0.954) TCGA-4T-AA8H-01 5 150885175 150885175 G A FAT2 Missense_Mutation p.S4334F 0.22 probably_damaging(0.999) TCGA-4T-AA8H-01 5 1878155 1878155 G A IRX4 Silent p.D496D 0.29 TCGA-4T-AA8H-01 5 38490322 38490322 G A LIFR Missense_Mutation p.R713C 0.23 deleterious(0) possibly_damaging(0.696) TCGA-4T-AA8H-01 5 50685699 50685699 G A ISL1 Missense_Mutation p.R233Q 0.21 deleterious(0) probably_damaging(0.989) TCGA-4T-AA8H-01 5 54415658 54415658 G A CDC20B Missense_Mutation p.P477L 0.25 deleterious(0) probably_damaging(0.993) TCGA-4T-AA8H-01 5 66459998 66459998 C T MAST4 Missense_Mutation p.T1664M 0.05 benign(0.099) TCGA-4T-AA8H-01 5 76624876 76624876 C T PDE8B Missense_Mutation p.S215L 0.21 tolerated(0.07) benign(0.426) TCGA-4T-AA8H-01 6 10802142 10802142 G A MAK Nonsense_Mutation p.R272* 0.31 TCGA-4T-AA8H-01 6 11105549 11105549 C A ERVFRD-1 5'UTR 0.52 TCGA-4T-AA8H-01 6 112441658 112441658 C T LAMA4 Missense_Mutation p.R1498H 0.27 tolerated(0.06) possibly_damaging(0.677) TCGA-4T-AA8H-01 6 26385482 26385482 G A BTN2A2 Missense_Mutation p.V112M 0.10 deleterious(0.03) possibly_damaging(0.73) TCGA-4T-AA8H-01 6 43034049 43034049 C T KLC4 Missense_Mutation p.R211C 0.23 tolerated(0.09) benign(0.001) TCGA-4T-AA8H-01 6 43128601 43128601 C T PTK7 Silent p.T1073T 0.06 TCGA-4T-AA8H-01 6 47847187 47847187 G T PTCHD4 Missense_Mutation p.P465T 0.34 tolerated(0.1) probably_damaging(0.997) TCGA-4T-AA8H-01 7 100284293 100284293 G A GIGYF1 Missense_Mutation p.R225C 0.06 deleterious(0) unknown(0) TCGA-4T-AA8H-01 7 107427818 107427818 G A SLC26A3 Missense_Mutation p.P291L 0.16 deleterious(0) probably_damaging(1) TCGA-4T-AA8H-01 7 132192925 132192925 G T PLXNA4 Nonsense_Mutation p.Y176* 0.34 TCGA-4T-AA8H-01 7 137590481 137590481 G A CREB3L2 Silent p.A294A 0.23 TCGA-4T-AA8H-01 7 142569486 142569486 C T TRPV6 Missense_Mutation p.G718R 0.36 deleterious_low_confidence(0.01) benign(0.021) TCGA-4T-AA8H-01 7 6661128 6661128 G T ZNF853 Missense_Mutation p.R169L 0.19 deleterious_low_confidence(0) unknown(0) TCGA-4T-AA8H-01 7 73731907 73731907 G A CLIP2 Missense_Mutation p.G11S 0.25 tolerated(0.71) possibly_damaging(0.451) TCGA-4T-AA8H-01 7 92017298 92017298 C T ANKIB1 Missense_Mutation p.R617C 0.23 deleterious(0.03) possibly_damaging(0.676) TCGA-4T-AA8H-01 8 113326192 113326192 G T CSMD3 Missense_Mutation p.L2547I 0.14 deleterious(0.04) possibly_damaging(0.643) TCGA-4T-AA8H-01 8 144660509 144660510 - CCGGC NAPRT1 5'UTR 0.21 TCGA-4T-AA8H-01 8 144808238 144808238 G A FAM83H Silent p.R1131R 0.18 TCGA-4T-AA8H-01 8 145001899 145001899 C T PLEC Silent p.T1282T 0.19 TCGA-4T-AA8H-01 8 15397937 15397937 G A TUSC3 5'UTR 0.18 TCGA-4T-AA8H-01 8 20107824 20107824 C T LZTS1 Silent p.E400E 0.10 TCGA-4T-AA8H-01 8 31497521 31497521 G A NRG1 Silent p.P7P 0.16 TCGA-4T-AA8H-01 8 38187026 38187026 G A WHSC1L1 Missense_Mutation p.T484M 0.17 deleterious(0.02) possibly_damaging(0.794) TCGA-4T-AA8H-01 8 68111226 68111226 T C ARFGEF1 Silent p.G1831G 0.16 TCGA-4T-AA8H-01 8 95683682 95683682 T C ESRP1 Missense_Mutation p.V412A 0.11 deleterious(0) benign(0.414) TCGA-4T-AA8H-01 8 97605818 97605818 G A SDC2 Silent p.S57S 0.10 TCGA-4T-AA8H-01 9 100962646 100962646 C T TBC1D2 Intron 0.06 TCGA-4T-AA8H-01 9 131554784 131554784 A T TBC1D13 Missense_Mutation p.N105I 0.25 deleterious(0) possibly_damaging(0.474) TCGA-4T-AA8H-01 9 135206808 135206808 G A SETX Missense_Mutation p.A289V 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-4T-AA8H-01 9 139100549 139100549 G A QSOX2 3'UTR 0.22 TCGA-4T-AA8H-01 9 140446689 140446689 G T MRPL41 Missense_Mutation p.Q52H 0.20 tolerated(0.12) possibly_damaging(0.667) TCGA-4T-AA8H-01 9 34256274 34256274 G A KIF24 Missense_Mutation p.H1111Y 0.22 tolerated(0.42) benign(0.006) TCGA-4T-AA8H-01 9 85607937 85607937 C T RASEF Missense_Mutation p.A642T 0.21 deleterious(0.03) possibly_damaging(0.908) TCGA-4T-AA8H-01 X 100099007 100099007 G A NOX1 Silent p.C543C 0.22 TCGA-4T-AA8H-01 X 106844973 106844973 G A FRMPD3 Missense_Mutation p.R1268Q 0.52 deleterious(0) probably_damaging(0.979) TCGA-4T-AA8H-01 X 110406948 110406948 G A PAK3 Silent p.E289E 0.23 TCGA-4T-AA8H-01 X 12701614 12701614 G T FRMPD4 Missense_Mutation p.A161S 0.22 tolerated(0.21) probably_damaging(0.998) TCGA-4T-AA8H-01 X 128886210 128886210 C A XPNPEP2 Silent p.I302I 0.26 TCGA-4T-AA8H-01 X 142795394 142795394 G T SPANXN2 Missense_Mutation p.S95Y 0.21 tolerated(0.09) unknown(0) TCGA-4T-AA8H-01 X 153152424 153152424 C T LCA10 Nonsense_Mutation p.Q271* 0.24 TCGA-4T-AA8H-01 X 19373602 19373602 G A PDHA1 Missense_Mutation p.D285N 0.22 tolerated(0.19) benign(0.014) TCGA-4T-AA8H-01 X 21675764 21675764 G A KLHL34 Missense_Mutation p.A48V 0.19 deleterious(0) probably_damaging(1) TCGA-4T-AA8H-01 X 22291846 22291846 C T ZNF645 Silent p.N246N 0.29 TCGA-4T-AA8H-01 X 49067481 49067481 G C CACNA1F Silent p.G1455G 0.30 TCGA-4T-AA8H-01 X 53279923 53279923 C T IQSEC2 Missense_Mutation p.R612H 0.20 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-4T-AA8H-01 X 54777753 54777753 G A ITIH6 Missense_Mutation p.T1138I 0.19 tolerated(0.22) benign(0.005) TCGA-4T-AA8H-01 X 65242600 65242600 C A VSIG4 Intron 0.19 TCGA-4T-AA8H-01 X 78217321 78217321 A G P2RY10 3'UTR 0.23 TCGA-4T-AA8H-01 X 79698728 79698728 G T FAM46D Missense_Mutation p.E230D 0.23 deleterious(0.02) probably_damaging(0.956) TCGA-4T-AA8H-01 X 84562279 84562279 G C POF1B Missense_Mutation p.L352V 0.20 deleterious(0) probably_damaging(0.998) TCGA-4T-AA8H-01 X 96139494 96139494 C A RPA4 Missense_Mutation p.P62H 0.23 tolerated(0.14) benign(0) TCGA-5M-AAT4-01 10 120354540 120354540 C T PRLHR Missense_Mutation p.V73M 0.12 deleterious(0.01) probably_damaging(0.948) TCGA-5M-AAT4-01 10 120354643 120354643 C T PRLHR Silent p.S38S 0.44 TCGA-5M-AAT4-01 10 123659390 123659390 G C ATE1 Intron 0.32 TCGA-5M-AAT4-01 10 27687257 27687257 G C PTCHD3 Missense_Mutation p.S757C 0.05 deleterious(0) possibly_damaging(0.831) TCGA-5M-AAT4-01 10 29769347 29769347 C A SVIL Intron 0.50 TCGA-5M-AAT4-01 10 33015747 33015747 G C C10ORF68 Missense_Mutation p.R192S 0.04 tolerated(0.29) benign(0.017) TCGA-5M-AAT4-01 10 34666947 34666947 C T PARD3 Missense_Mutation p.R496Q 0.16 deleterious(0.05) benign(0.084) TCGA-5M-AAT4-01 10 45799763 45799763 C T OR13A1 Silent p.S36S 0.07 TCGA-5M-AAT4-01 10 48370866 48370866 C A ZNF488 Missense_Mutation p.Q112K 0.12 tolerated(0.06) benign(0.005) TCGA-5M-AAT4-01 10 72026010 72026010 C T NPFFR1 Missense_Mutation p.A49T 0.05 deleterious(0.03) benign(0.391) TCGA-5M-AAT4-01 11 1008046 1008046 C T AP2A2 Silent p.T777T 0.53 TCGA-5M-AAT4-01 11 100922207 100922207 T G PGR Missense_Mutation p.K769Q 0.04 tolerated(0.2) benign(0.235) TCGA-5M-AAT4-01 11 105795331 105795331 C A GRIA4 Silent p.V561V 0.05 TCGA-5M-AAT4-01 11 114121071 114121071 C G ZBTB16 Missense_Mutation p.L606V 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-5M-AAT4-01 11 118367048 118367048 C T KMT2A Missense_Mutation p.A1877V 0.41 benign(0.204) TCGA-5M-AAT4-01 11 1959850 1959850 G T TNNT3 3'UTR 0.07 TCGA-5M-AAT4-01 11 26538391 26538391 C T ANO3 Silent p.P203P 0.23 TCGA-5M-AAT4-01 11 5012670 5012670 G A MMP26 Missense_Mutation p.G180E 0.05 tolerated(0.5) benign(0.002) TCGA-5M-AAT4-01 11 55999758 55999758 T G OR5T2 Missense_Mutation p.S302R 0.10 deleterious(0.01) possibly_damaging(0.548) TCGA-5M-AAT4-01 11 58920810 58920810 G A FAM111A Missense_Mutation p.A557T 0.24 tolerated(1) benign(0.002) TCGA-5M-AAT4-01 11 6232359 6232359 C A C11orf42 3'UTR 0.05 TCGA-5M-AAT4-01 11 62439422 62439422 C T C11orf83 Intron 0.43 TCGA-5M-AAT4-01 11 624594 624594 C T CDHR5 Missense_Mutation p.G75E 0.48 tolerated(0.11) possibly_damaging(0.662) TCGA-5M-AAT4-01 11 624595 624595 C T CDHR5 Missense_Mutation p.G75R 0.48 tolerated(0.06) benign(0.029) TCGA-5M-AAT4-01 11 66029368 66029368 C G KLC2 Silent p.A128A 0.47 TCGA-5M-AAT4-01 11 7021550 7021550 G A ZNF214 Missense_Mutation p.S455L 0.59 deleterious(0.03) probably_damaging(0.994) TCGA-5M-AAT4-01 11 7111149 7111149 C T RBMXL2 Silent p.R266R 0.09 TCGA-5M-AAT4-01 11 73789580 73789580 C A C2CD3 Missense_Mutation p.D1395Y 0.15 deleterious(0) probably_damaging(0.979) TCGA-5M-AAT4-01 11 77937579 77937579 C A GAB2 Missense_Mutation p.R380I 0.24 tolerated(0.28) benign(0.041) TCGA-5M-AAT4-01 12 115118932 115118933 - A TBX3 Frame_Shift_Ins p.K137* 0.12 TCGA-5M-AAT4-01 12 21757581 21757581 C A GYS2 5'UTR 0.08 TCGA-5M-AAT4-01 12 24736849 24736849 C T LINC00477 RNA 0.04 TCGA-5M-AAT4-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.46 deleterious(0) benign(0.361) TCGA-5M-AAT4-01 12 50050930 50050930 G T FMNL3 Missense_Mutation p.L217I 0.44 tolerated(0.27) possibly_damaging(0.872) TCGA-5M-AAT4-01 12 5153712 5153712 G A KCNA5 Silent p.T133T 0.21 TCGA-5M-AAT4-01 12 53431387 53431387 G C EIF4B Missense_Mutation p.E501Q 0.51 tolerated_low_confidence(0.14) benign(0.286) TCGA-5M-AAT4-01 12 56092245 56092245 G A ITGA7 Missense_Mutation p.R376W 0.20 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 12 75784928 75784928 G C GLIPR1L2 Missense_Mutation p.W11S 0.30 deleterious_low_confidence(0.04) benign(0.08) TCGA-5M-AAT4-01 13 111545418 111545418 C T ANKRD10 Silent p.L216L 0.17 TCGA-5M-AAT4-01 13 42877468 42877468 G T AKAP11 Missense_Mutation p.G1529V 0.27 deleterious(0.03) possibly_damaging(0.586) TCGA-5M-AAT4-01 13 84456367 84456367 C A SLITRK1 5'UTR 0.24 TCGA-5M-AAT4-01 14 33293942 33293942 A C AKAP6 Missense_Mutation p.N2308T 0.05 tolerated_low_confidence(0.05) benign(0.075) TCGA-5M-AAT4-01 14 34269371 34269371 G A NPAS3 Missense_Mutation p.A620T 0.37 tolerated_low_confidence(0.55) benign(0) TCGA-5M-AAT4-01 14 50626428 50626428 C T SOS2 Missense_Mutation p.A525T 0.07 tolerated(0.37) benign(0.155) TCGA-5M-AAT4-01 14 55514178 55514178 C G SOCS4 3'UTR 0.24 TCGA-5M-AAT4-01 14 77715696 77715696 C G TMEM63C Missense_Mutation p.P645A 0.24 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 14 89336444 89336444 A G TTC8 Silent p.E317E 0.33 TCGA-5M-AAT4-01 15 101561328 101561328 C T LRRK1 Silent p.L560L 0.06 TCGA-5M-AAT4-01 15 33795930 33795930 C T RYR3 Silent p.G90G 0.08 TCGA-5M-AAT4-01 15 42279484 42279484 A T PLA2G4E Missense_Mutation p.S641T 0.68 tolerated(1) benign(0) TCGA-5M-AAT4-01 15 43360110 43360110 C T UBR1 Missense_Mutation p.A262T 0.57 tolerated(0.88) possibly_damaging(0.506) TCGA-5M-AAT4-01 15 74315368 74315368 C G PML Missense_Mutation p.L268V 0.67 deleterious(0) probably_damaging(0.955) TCGA-5M-AAT4-01 15 74467189 74467189 C T ISLR Intron 0.58 TCGA-5M-AAT4-01 15 90176946 90176946 C A KIF7 Nonsense_Mutation p.E855* 0.17 TCGA-5M-AAT4-01 16 12875250 12875250 G A CPPED1 Silent p.S27S 0.09 TCGA-5M-AAT4-01 16 2164250 2164250 C T PKD1 Missense_Mutation p.R925Q 0.32 benign(0.002) TCGA-5M-AAT4-01 16 21698900 21698900 G C OTOA Missense_Mutation p.G189A 0.09 tolerated(0.85) benign(0.041) TCGA-5M-AAT4-01 16 28137066 28137066 G A XPO6 Silent p.Y570Y 0.42 TCGA-5M-AAT4-01 16 28167545 28167545 A T XPO6 Missense_Mutation p.I316N 0.36 deleterious(0) probably_damaging(0.968) TCGA-5M-AAT4-01 16 30736066 30736066 C T SRCAP Missense_Mutation p.S1774L 0.27 possibly_damaging(0.561) TCGA-5M-AAT4-01 16 48218502 48218502 A C ABCC11 Missense_Mutation p.L1036R 0.06 deleterious(0.03) possibly_damaging(0.845) TCGA-5M-AAT4-01 16 49671938 49671938 G A ZNF423 Silent p.S375S 0.32 TCGA-5M-AAT4-01 16 53283948 53283948 T C CHD9 Silent p.D1277D 0.29 TCGA-5M-AAT4-01 16 55364229 55364229 C T IRX6 3'UTR 0.05 TCGA-5M-AAT4-01 16 61687510 61687510 T C CDH8 3'UTR 0.37 TCGA-5M-AAT4-01 16 683274 683274 C T WFIKKN1 Silent p.D288D 0.07 TCGA-5M-AAT4-01 16 81164217 81164217 C T PKD1L2 RNA 0.26 TCGA-5M-AAT4-01 16 9858054 9858054 T G GRIN2A Missense_Mutation p.K1116T 0.41 deleterious(0) possibly_damaging(0.82) TCGA-5M-AAT4-01 17 12032600 12032600 T - MAP2K4 Frame_Shift_Del p.L346Cfs*17 0.35 TCGA-5M-AAT4-01 17 1537983 1537983 C T SCARF1 3'UTR 0.66 TCGA-5M-AAT4-01 17 1961785 1961785 G A HIC1 Missense_Mutation p.G620S 0.17 deleterious(0.01) probably_damaging(0.937) TCGA-5M-AAT4-01 17 37790181 37790184 TGAA - PPP1R1B Frame_Shift_Del p.N97Rfs*45 0.48 TCGA-5M-AAT4-01 17 38935821 38935821 T C KRT27 Missense_Mutation p.N302S 0.08 tolerated(0.98) benign(0.124) TCGA-5M-AAT4-01 17 56440645 56440645 G A RNF43 Silent p.P191P 0.51 TCGA-5M-AAT4-01 17 64299131 64299131 C T PRKCA Silent p.T54T 0.05 TCGA-5M-AAT4-01 17 66928455 66928455 C A ABCA8 Missense_Mutation p.M257I 0.08 tolerated(0.09) benign(0.117) TCGA-5M-AAT4-01 17 72588241 72588241 C T C17orf77 Missense_Mutation p.A19V 0.51 tolerated_low_confidence(0.15) possibly_damaging(0.695) TCGA-5M-AAT4-01 17 7369580 7369580 C T ZBTB4 Missense_Mutation p.G181R 0.71 probably_damaging(0.979) TCGA-5M-AAT4-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.70 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT4-01 17 7828480 7828480 C T KCNAB3 Missense_Mutation p.R187H 0.59 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT4-01 17 78319187 78319187 A T RNF213 Missense_Mutation p.Y2351F 0.27 benign(0.037) TCGA-5M-AAT4-01 17 79612053 79612054 - CCA TSPAN10 In_Frame_Ins p.P26dup 0.46 TCGA-5M-AAT4-01 18 51057063 51057063 T A DCC 3'UTR 0.24 TCGA-5M-AAT4-01 18 59166591 59166591 G A CDH20 Missense_Mutation p.R140Q 0.19 tolerated(0.54) benign(0.283) TCGA-5M-AAT4-01 18 61166365 61166365 C G SERPINB5 Missense_Mutation p.P194A 0.60 deleterious(0.05) benign(0.019) TCGA-5M-AAT4-01 18 77119437 77119437 C T ATP9B Missense_Mutation p.P996L 0.20 deleterious(0) possibly_damaging(0.514) TCGA-5M-AAT4-01 19 19612853 19612853 G C GATAD2A Splice_Site p.X525_splice 0.14 TCGA-5M-AAT4-01 19 22846715 22846715 A T ZNF492 Nonsense_Mutation p.R82* 0.49 TCGA-5M-AAT4-01 19 22940982 22940982 A T ZNF99 Missense_Mutation p.S577T 0.05 tolerated(0.38) benign(0.171) TCGA-5M-AAT4-01 19 37854384 37854384 C T HKR1 Missense_Mutation p.R563W 0.06 deleterious(0.01) possibly_damaging(0.849) TCGA-5M-AAT4-01 19 39299520 39299520 A C LGALS4 Missense_Mutation p.F68C 0.35 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 19 44739479 44739479 G T ZNF227 Missense_Mutation p.C299F 0.42 deleterious(0.03) benign(0.014) TCGA-5M-AAT4-01 19 45412238 45412238 G C APOE Missense_Mutation p.G229R 0.43 tolerated(0.24) benign(0.138) TCGA-5M-AAT4-01 19 48989024 48989024 G A LMTK3 3'UTR 0.52 TCGA-5M-AAT4-01 19 49110464 49110464 G A SPACA4 Missense_Mutation p.V77I 0.33 tolerated(0.39) benign(0.058) TCGA-5M-AAT4-01 19 56180536 56180536 G A U2AF2 Missense_Mutation p.V345M 0.17 tolerated(0.22) benign(0.043) TCGA-5M-AAT4-01 19 56274450 56274450 G A RFPL4A Missense_Mutation p.R258H 0.38 tolerated(0.55) benign(0.005) TCGA-5M-AAT4-01 19 8575540 8575540 C A ZNF414 3'UTR 0.06 TCGA-5M-AAT4-01 19 9213553 9213553 A C OR7G2 Missense_Mutation p.Y144D 0.24 deleterious(0) probably_damaging(0.979) TCGA-5M-AAT4-01 1 150778669 150778669 T C CTSK Missense_Mutation p.E51G 0.06 deleterious(0.01) possibly_damaging(0.565) TCGA-5M-AAT4-01 1 151373770 151373770 G A PSMB4 Missense_Mutation p.R211H 0.55 tolerated(0.21) benign(0.014) TCGA-5M-AAT4-01 1 152084003 152084003 C G TCHH Missense_Mutation p.E564Q 0.08 unknown(0) TCGA-5M-AAT4-01 1 155151044 155151044 G A TRIM46 Missense_Mutation p.V414M 0.40 deleterious(0.02) benign(0.42) TCGA-5M-AAT4-01 1 156821174 156821175 AG - INSRR Frame_Shift_Del p.T379Rfs*91 0.14 TCGA-5M-AAT4-01 1 158517520 158517520 C T OR6Y1 Missense_Mutation p.D126N 0.21 deleterious(0) probably_damaging(0.983) TCGA-5M-AAT4-01 1 161254225 161254225 G A PCP4L1 Missense_Mutation p.G54D 0.48 tolerated(0.13) probably_damaging(0.996) TCGA-5M-AAT4-01 1 170521251 170521251 G T GORAB Missense_Mutation p.C278F 0.05 tolerated(0.1) benign(0.328) TCGA-5M-AAT4-01 1 170967601 170967601 G T MROH9 Intron 0.43 TCGA-5M-AAT4-01 1 181754870 181754870 C T CACNA1E Missense_Mutation p.R1901C 0.19 deleterious(0) possibly_damaging(0.689) TCGA-5M-AAT4-01 1 186082048 186082048 A C HMCN1 Silent p.A3698A 0.07 TCGA-5M-AAT4-01 1 186344323 186344323 G T TPR 5'UTR 0.05 TCGA-5M-AAT4-01 1 190234137 190234137 C T BRINP3 Missense_Mutation p.R159Q 0.19 tolerated(0.23) benign(0.001) TCGA-5M-AAT4-01 1 204118991 204118991 G A ETNK2 Silent p.L120L 0.50 TCGA-5M-AAT4-01 1 216420388 216420388 T G USH2A Missense_Mutation p.N783T 0.30 possibly_damaging(0.635) TCGA-5M-AAT4-01 1 222801630 222801630 G C MIA3 Missense_Mutation p.Q356H 0.03 deleterious(0.02) possibly_damaging(0.541) TCGA-5M-AAT4-01 1 228346908 228346908 C T GJC2 3'UTR 0.22 TCGA-5M-AAT4-01 1 238090415 238090415 G A RP11-193H5.1 RNA 0.49 TCGA-5M-AAT4-01 1 248201552 248201552 G A OR2L2 5'UTR 0.15 TCGA-5M-AAT4-01 1 248309291 248309291 T G OR2M5 Missense_Mutation p.L281R 0.09 deleterious(0) probably_damaging(0.936) TCGA-5M-AAT4-01 1 25558413 25558413 A G SYF2 Intron 0.71 TCGA-5M-AAT4-01 1 27994820 27994820 G T IFI6 Missense_Mutation p.A80D 0.10 deleterious(0) probably_damaging(0.971) TCGA-5M-AAT4-01 1 28157428 28157428 G A PPP1R8 Intron 0.63 TCGA-5M-AAT4-01 1 3350449 3350449 G A PRDM16 3'UTR 0.68 TCGA-5M-AAT4-01 1 38024931 38024931 G T DNALI1 Missense_Mutation p.E99D 0.61 deleterious(0.03) possibly_damaging(0.716) TCGA-5M-AAT4-01 1 5967263 5967263 G A NPHP4 Missense_Mutation p.A508V 0.11 tolerated(0.23) benign(0.007) TCGA-5M-AAT4-01 1 71513184 71513184 G A PTGER3 Missense_Mutation p.A26V 0.06 tolerated_low_confidence(0.07) benign(0.158) TCGA-5M-AAT4-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.11 TCGA-5M-AAT4-01 20 17338998 17338998 A C PCSK2 Silent p.G103G 0.04 TCGA-5M-AAT4-01 20 35743675 35743675 G A MROH8 Silent p.I839I 0.07 TCGA-5M-AAT4-01 20 3641311 3641311 C T GFRA4 Missense_Mutation p.A197T 0.28 tolerated(0.07) benign(0.014) TCGA-5M-AAT4-01 20 37555027 37555027 C T FAM83D Missense_Mutation p.P11L 0.06 tolerated_low_confidence(0.92) benign(0.015) TCGA-5M-AAT4-01 20 60581775 60581775 C T TAF4 Missense_Mutation p.A672T 0.06 probably_damaging(0.995) TCGA-5M-AAT4-01 20 62273583 62273583 C A STMN3 Missense_Mutation p.A121S 0.42 deleterious(0) possibly_damaging(0.514) TCGA-5M-AAT4-01 20 9624969 9624969 C T PAK7 Missense_Mutation p.G3E 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-5M-AAT4-01 21 31587979 31587979 C T CLDN8 Missense_Mutation p.V89M 0.35 deleterious(0.05) probably_damaging(0.984) TCGA-5M-AAT4-01 21 35260486 35260486 C T ITSN1 Missense_Mutation p.A1683V 0.37 deleterious(0.01) possibly_damaging(0.82) TCGA-5M-AAT4-01 21 39671581 39671581 G A KCNJ15 Missense_Mutation p.R133H 0.31 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT4-01 22 30209451 30209451 G T ASCC2 Nonsense_Mutation p.C267* 0.09 TCGA-5M-AAT4-01 22 30688534 30688534 G T TBC1D10A Missense_Mutation p.Q460K 0.13 tolerated_low_confidence(0.96) benign(0.001) TCGA-5M-AAT4-01 22 31523877 31523877 A T INPP5J Intron 0.07 TCGA-5M-AAT4-01 22 39884893 39884893 G A MGAT3 Missense_Mutation p.R514H 0.17 tolerated_low_confidence(0.1) benign(0) TCGA-5M-AAT4-01 2 125262020 125262020 T G CNTNAP5 Missense_Mutation p.L404R 0.39 deleterious(0.01) probably_damaging(1) TCGA-5M-AAT4-01 2 127951402 127951402 T C CYP27C1 Missense_Mutation p.E254G 0.34 deleterious(0.03) possibly_damaging(0.612) TCGA-5M-AAT4-01 2 131674261 131674261 G C ARHGEF4 5'UTR 0.06 TCGA-5M-AAT4-01 2 136473203 136473203 T C R3HDM1 Silent p.R905R 0.04 TCGA-5M-AAT4-01 2 179611203 179611203 T G TTN Intron 0.08 TCGA-5M-AAT4-01 2 197878400 197878400 G T HNRNPA3P15 5'Flank 0.06 TCGA-5M-AAT4-01 2 211455539 211455539 C T CPS1 Missense_Mutation p.R292C 0.05 deleterious(0.02) probably_damaging(0.984) TCGA-5M-AAT4-01 2 215617210 215617210 T A BARD1 Silent p.P546P 0.13 TCGA-5M-AAT4-01 2 216238134 216238134 C A FN1 Missense_Mutation p.G2053V 0.32 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT4-01 2 217234886 217234886 C T MARCH4 Missense_Mutation p.R33H 0.38 tolerated_low_confidence(0.12) probably_damaging(0.964) TCGA-5M-AAT4-01 2 27457025 27457025 A G CAD Silent p.K1183K 0.37 TCGA-5M-AAT4-01 2 29419709 29419709 T G ALK Missense_Mutation p.Q1364P 0.06 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 2 48602398 48602398 C G FOXN2 Missense_Mutation p.P371R 0.24 tolerated(0.32) benign(0.001) TCGA-5M-AAT4-01 2 5832936 5832936 C T SOX11 Missense_Mutation p.A28V 0.04 deleterious(0.03) possibly_damaging(0.514) TCGA-5M-AAT4-01 2 5834139 5834139 G C SOX11 Missense_Mutation p.W429S 0.06 deleterious(0.02) probably_damaging(0.987) TCGA-5M-AAT4-01 2 70315180 70315180 T C PCBP1 Missense_Mutation p.L102P 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-5M-AAT4-01 2 74782566 74782566 C T DOK1 Nonsense_Mutation p.R116* 0.35 TCGA-5M-AAT4-01 2 98351893 98351893 G A ZAP70 Silent p.P421P 0.07 TCGA-5M-AAT4-01 3 100295783 100295783 G C TMEM45A Missense_Mutation p.R250T 0.14 deleterious(0) possibly_damaging(0.848) TCGA-5M-AAT4-01 3 118937564 118937564 A G B4GALT4 Missense_Mutation p.F244L 0.19 tolerated(1) benign(0.008) TCGA-5M-AAT4-01 3 118937566 118937566 A C B4GALT4 Missense_Mutation p.F243C 0.19 deleterious(0) probably_damaging(0.992) TCGA-5M-AAT4-01 3 12195057 12195057 G T TIMP4 Missense_Mutation p.H211Q 0.15 tolerated(0.37) benign(0.043) TCGA-5M-AAT4-01 3 126708480 126708480 C G PLXNA1 Silent p.R348R 0.07 TCGA-5M-AAT4-01 3 126737271 126737271 C T PLXNA1 Silent p.I1265I 0.56 TCGA-5M-AAT4-01 3 128584188 128584188 G A RP11-723O4.9 5'Flank 0.05 TCGA-5M-AAT4-01 3 129325301 129325301 T C PLXND1 Missense_Mutation p.N61S 0.46 deleterious(0.03) possibly_damaging(0.741) TCGA-5M-AAT4-01 3 140407232 140407232 G A TRIM42 Missense_Mutation p.G570S 0.08 tolerated(0.73) benign(0.007) TCGA-5M-AAT4-01 3 16419521 16419521 G A RFTN1 Missense_Mutation p.P177L 0.65 tolerated(0.82) benign(0.002) TCGA-5M-AAT4-01 3 178916811 178916811 T A PIK3CA Silent p.S66S 0.55 TCGA-5M-AAT4-01 3 178916819 178916819 T A PIK3CA Missense_Mutation p.I69N 0.55 deleterious(0) probably_damaging(0.994) TCGA-5M-AAT4-01 3 38887999 38887999 T C SCN11A 3'UTR 0.83 TCGA-5M-AAT4-01 3 433421 433421 G T CHL1 Missense_Mutation p.W952L 0.18 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 3 68782143 68782143 A C FAM19A4 3'UTR 0.60 TCGA-5M-AAT4-01 4 110670683 110670683 C T CFI Missense_Mutation p.R339Q 0.47 deleterious(0) probably_damaging(0.989) TCGA-5M-AAT4-01 4 113436074 113436074 G C NEUROG2 Missense_Mutation p.F186L 0.07 tolerated(0.22) possibly_damaging(0.827) TCGA-5M-AAT4-01 4 123150301 123150301 C T KIAA1109 Missense_Mutation p.P983L 0.26 benign(0.008) TCGA-5M-AAT4-01 4 153244092 153244092 G A FBXW7 Missense_Mutation p.R689W 0.37 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT4-01 4 153245446 153245446 G A FBXW7 Missense_Mutation p.S582L 0.24 tolerated(0.15) probably_damaging(0.996) TCGA-5M-AAT4-01 4 153253820 153253821 - TGCT FBXW7 Frame_Shift_Ins p.A305Sfs*13 0.33 TCGA-5M-AAT4-01 4 158224758 158224758 A C GRIA2 Missense_Mutation p.K95T 0.28 tolerated(0.15) probably_damaging(0.925) TCGA-5M-AAT4-01 4 158257765 158257765 C T GRIA2 Silent p.Y570Y 0.25 TCGA-5M-AAT4-01 4 23816149 23816149 A T PPARGC1A Silent p.S319S 0.21 TCGA-5M-AAT4-01 4 3768850 3768850 G A ADRA2C Missense_Mutation p.V173M 0.07 deleterious(0.01) possibly_damaging(0.895) TCGA-5M-AAT4-01 4 55956151 55956151 T G KDR Missense_Mutation p.K1055T 0.36 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 4 66535312 66535312 A G EPHA5 Missense_Mutation p.L50P 0.33 tolerated(0.17) possibly_damaging(0.766) TCGA-5M-AAT4-01 4 71063019 71063019 T G ODAM Missense_Mutation p.L41R 0.08 deleterious(0) probably_damaging(0.955) TCGA-5M-AAT4-01 4 8376722 8376722 G A ACOX3 Missense_Mutation p.A604V 0.13 tolerated(0.06) benign(0.004) TCGA-5M-AAT4-01 4 8412079 8412079 A C ACOX3 Missense_Mutation p.F183V 0.56 deleterious(0) probably_damaging(0.973) TCGA-5M-AAT4-01 4 89199444 89199444 C T PPM1K Missense_Mutation p.A98T 0.06 tolerated(0.17) benign(0.194) TCGA-5M-AAT4-01 4 89574092 89574092 C G HERC3 Missense_Mutation p.A179G 0.13 tolerated(0.42) benign(0.174) TCGA-5M-AAT4-01 5 112175746 112175746 T - APC Frame_Shift_Del p.D1486Ifs*21 0.36 TCGA-5M-AAT4-01 5 140166589 140166589 C T PCDHA1 Silent p.N238N 0.15 TCGA-5M-AAT4-01 5 140242277 140242277 G A AC005609.1 3'UTR 0.13 TCGA-5M-AAT4-01 5 140559584 140559584 G A PCDHB8 Missense_Mutation p.A657T 0.34 deleterious_low_confidence(0.01) benign(0.225) TCGA-5M-AAT4-01 5 140580619 140580619 C T PCDHB11 Silent p.T424T 0.19 TCGA-5M-AAT4-01 5 145641139 145641139 G C RBM27 Missense_Mutation p.A654P 0.10 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 5 151176897 151176897 C G G3BP1 Missense_Mutation p.P217A 0.03 tolerated(0.45) benign(0.001) TCGA-5M-AAT4-01 5 43653153 43653153 G A NNT Missense_Mutation p.G633S 0.05 tolerated(0.16) probably_damaging(0.987) TCGA-5M-AAT4-01 5 5182329 5182329 C T ADAMTS16 Missense_Mutation p.T225I 0.03 tolerated(0.19) benign(0.011) TCGA-5M-AAT4-01 5 75427654 75427654 G C SV2C Missense_Mutation p.V27L 0.15 tolerated_low_confidence(0.08) benign(0.004) TCGA-5M-AAT4-01 5 82841381 82841381 G A VCAN Silent p.P3097P 0.13 TCGA-5M-AAT4-01 5 843754 843754 C T ZDHHC11 Missense_Mutation p.V197M 0.15 tolerated(0.09) benign(0.418) TCGA-5M-AAT4-01 6 126206422 126206422 G T NCOA7 Nonsense_Mutation p.E273* 0.29 TCGA-5M-AAT4-01 6 130182414 130182414 G A TMEM244 Intron 0.60 TCGA-5M-AAT4-01 6 136599103 136599103 C T BCLAF1 Missense_Mutation p.A306T 0.16 tolerated(1) benign(0.001) TCGA-5M-AAT4-01 6 138192581 138192581 A G TNFAIP3 Missense_Mutation p.I73V 0.29 tolerated(1) benign(0.001) TCGA-5M-AAT4-01 6 154360839 154360839 G A OPRM1 Missense_Mutation p.G147R 0.26 deleterious(0.01) benign(0.013) TCGA-5M-AAT4-01 6 26027344 26027344 C G HIST1H4B Missense_Mutation p.R46P 0.08 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-5M-AAT4-01 6 28889730 28889730 C G TRIM27 Missense_Mutation p.R152T 0.08 tolerated(0.07) possibly_damaging(0.587) TCGA-5M-AAT4-01 6 31721188 31721188 G A MSH5 Missense_Mutation p.R308Q 0.05 tolerated(0.24) benign(0.065) TCGA-5M-AAT4-01 6 31895931 31895931 G A CFB Silent p.A82A 0.47 TCGA-5M-AAT4-01 6 31947304 31947304 C A STK19 Silent p.T263T 0.27 TCGA-5M-AAT4-01 6 32083634 32083634 G A ATF6B Missense_Mutation p.S665L 0.38 tolerated(0.21) probably_damaging(0.998) TCGA-5M-AAT4-01 6 54805970 54805970 C G FAM83B Missense_Mutation p.T734S 0.46 tolerated(0.7) benign(0.003) TCGA-5M-AAT4-01 6 56469454 56469454 C A DST Intron 0.56 TCGA-5M-AAT4-01 6 75838041 75838041 C T COL12A1 Missense_Mutation p.G2104D 0.06 probably_damaging(1) TCGA-5M-AAT4-01 7 100463782 100463782 G T SLC12A9 Missense_Mutation p.R767L 0.04 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 7 121726086 121726086 G A AASS Missense_Mutation p.R722W 0.07 deleterious(0) probably_damaging(1) TCGA-5M-AAT4-01 7 134931406 134931406 C T STRA8 Silent p.G228G 0.42 TCGA-5M-AAT4-01 7 137080377 137080377 A T DGKI Missense_Mutation p.D1016E 0.06 tolerated(1) benign(0.011) TCGA-5M-AAT4-01 7 141752613 141752613 C A MGAM Nonsense_Mutation p.C996* 0.20 TCGA-5M-AAT4-01 7 14661029 14661029 C T DGKB Missense_Mutation p.V421I 0.38 tolerated(0.8) benign(0.003) TCGA-5M-AAT4-01 7 156476680 156476680 C T LMBR1 3'UTR 0.34 TCGA-5M-AAT4-01 7 24689372 24689372 G - MPP6 Frame_Shift_Del p.E139Nfs*5 0.27 TCGA-5M-AAT4-01 7 295860 295860 C T FAM20C Missense_Mutation p.T373M 0.05 deleterious(0.03) probably_damaging(0.99) TCGA-5M-AAT4-01 7 56066919 56066919 T C GBAS 3'UTR 0.54 TCGA-5M-AAT4-01 7 75614245 75614245 G A POR Missense_Mutation p.R406H 0.33 tolerated(0.12) benign(0.001) TCGA-5M-AAT4-01 7 77408776 77408776 T A RSBN1L 3'UTR 0.30 TCGA-5M-AAT4-01 7 77789453 77789453 C T MAGI2 Missense_Mutation p.A912T 0.08 tolerated(0.36) benign(0.001) TCGA-5M-AAT4-01 7 77885499 77885499 A C MAGI2 Missense_Mutation p.L603R 0.41 deleterious(0) probably_damaging(0.926) TCGA-5M-AAT4-01 8 116632055 116632055 G A TRPS1 Silent p.S90S 0.35 TCGA-5M-AAT4-01 8 121211708 121211708 C A COL14A1 Silent p.S260S 0.04 TCGA-5M-AAT4-01 8 126015585 126015585 G C SQLE Missense_Mutation p.E153D 0.05 deleterious(0) probably_damaging(0.994) TCGA-5M-AAT4-01 8 143746983 143746983 G C JRK RNA 0.08 TCGA-5M-AAT4-01 8 144940592 144940592 C G EPPK1 Missense_Mutation p.R2277P 0.06 possibly_damaging(0.698) TCGA-5M-AAT4-01 8 28633303 28633303 C T INTS9 Silent p.R512R 0.08 TCGA-5M-AAT4-01 8 2910067 2910067 T G CSMD1 Missense_Mutation p.K2526T 0.55 benign(0.096) TCGA-5M-AAT4-01 8 39468161 39468161 T C ADAM18 Missense_Mutation p.L153S 0.62 tolerated(0.07) benign(0.327) TCGA-5M-AAT4-01 8 6673354 6673354 G A XKR5 RNA 0.30 TCGA-5M-AAT4-01 8 71025734 71025734 C A NCOA2 3'UTR 0.08 TCGA-5M-AAT4-01 8 72965991 72965991 G A TRPA1 Silent p.D547D 0.28 TCGA-5M-AAT4-01 8 95531318 95531318 G A KIAA1429 Missense_Mutation p.T803I 0.43 tolerated(0.1) probably_damaging(0.989) TCGA-5M-AAT4-01 9 103340767 103340768 - A MURC Frame_Shift_Ins p.V117Sfs*2 0.27 TCGA-5M-AAT4-01 9 117666361 117666361 G C TNFSF8 Missense_Mutation p.H185Q 0.06 tolerated(0.13) benign(0.004) TCGA-5M-AAT4-01 9 132642461 132642461 A C USP20 Missense_Mutation p.E885A 0.37 deleterious(0.03) possibly_damaging(0.877) TCGA-5M-AAT4-01 9 27566835 27566835 A G C9orf72 Missense_Mutation p.V95A 0.38 tolerated(0.28) possibly_damaging(0.543) TCGA-5M-AAT4-01 9 43630569 43630569 A T SPATA31A6 Missense_Mutation p.Y45N 0.14 tolerated(0.3) benign(0.124) TCGA-5M-AAT4-01 9 71836150 71836150 G C TJP2 Silent p.G261G 0.05 TCGA-5M-AAT4-01 9 88234020 88234020 G C AGTPBP1 Nonsense_Mutation p.S698* 0.08 TCGA-5M-AAT4-01 9 95840227 95840227 G T SUSD3 Missense_Mutation p.C126F 0.07 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT4-01 X 101623726 101623726 G T NXF2B Silent p.G212G 0.03 TCGA-5M-AAT4-01 X 110406220 110406220 A T PAK3 Missense_Mutation p.E218D 0.85 tolerated(0.56) benign(0.009) TCGA-5M-AAT4-01 X 123229250 123229250 C - STAG2 Frame_Shift_Del p.T1245Kfs*3 0.42 TCGA-5M-AAT4-01 X 13337190 13337190 T C ATXN3L Silent p.E288E 0.05 TCGA-5M-AAT4-01 X 138698562 138698562 T C MCF2 Missense_Mutation p.E417G 0.06 deleterious(0.01) possibly_damaging(0.611) TCGA-5M-AAT4-01 X 138871575 138871575 C G ATP11C Missense_Mutation p.D430H 0.05 deleterious(0.04) probably_damaging(0.988) TCGA-5M-AAT4-01 X 139038561 139038561 G T CXorf66 Missense_Mutation p.L194I 0.07 tolerated(0.25) possibly_damaging(0.801) TCGA-5M-AAT4-01 X 150911821 150911821 C A CNGA2 Silent p.I282I 0.10 TCGA-5M-AAT4-01 X 153631658 153631658 G A RPL10 3'Flank 0.06 TCGA-5M-AAT4-01 X 154292425 154292425 A C MTCP1 3'UTR 0.88 TCGA-5M-AAT4-01 X 41333091 41333091 C T NYX Missense_Mutation p.R129C 0.84 deleterious(0.01) probably_damaging(0.988) TCGA-5M-AAT4-01 X 46952452 46952452 A C RGN 3'UTR 0.88 TCGA-5M-AAT4-01 X 65428048 65428048 G T HEPH Silent p.V895V 0.80 TCGA-5M-AAT4-01 X 9914752 9914752 C T SHROOM2 Silent p.H1542H 0.17 TCGA-5M-AAT5-01 10 134942964 134942964 C T GPR123 Silent p.D544D 0.67 TCGA-5M-AAT5-01 10 24873911 24873911 T C ARHGAP21 Silent p.L1769L 0.20 TCGA-5M-AAT5-01 10 50315779 50315779 C T VSTM4 Missense_Mutation p.R106Q 0.45 tolerated(0.68) benign(0.034) TCGA-5M-AAT5-01 10 73569639 73569639 G A CDH23 Missense_Mutation p.V689M 0.71 tolerated(0.13) benign(0.007) TCGA-5M-AAT5-01 10 7621821 7621821 C T ITIH5 Missense_Mutation p.G439S 0.49 deleterious(0) probably_damaging(0.993) TCGA-5M-AAT5-01 11 4869673 4869673 G A OR51S1 Missense_Mutation p.L256F 0.14 deleterious(0.03) benign(0.076) TCGA-5M-AAT5-01 11 66082365 66082365 G A CD248 Missense_Mutation p.R712C 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-5M-AAT5-01 12 131590344 131590344 C A GPR133 Missense_Mutation p.N607K 0.45 deleterious(0) probably_damaging(1) TCGA-5M-AAT5-01 12 1893206 1893206 C T ADIPOR2 Silent p.P333P 0.35 TCGA-5M-AAT5-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.36 deleterious(0) benign(0.361) TCGA-5M-AAT5-01 12 48141400 48141400 C T RAPGEF3 Missense_Mutation p.D495N 0.39 tolerated(0.46) benign(0.026) TCGA-5M-AAT5-01 12 6128562 6128562 C T VWF Missense_Mutation p.R1341Q 0.52 deleterious(0.01) possibly_damaging(0.88) TCGA-5M-AAT5-01 12 7019114 7019114 C T LRRC23 Missense_Mutation p.H228Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT5-01 12 77257009 77257009 G A CSRP2 Silent p.G76G 0.41 TCGA-5M-AAT5-01 12 81009985 81009985 G A PTPRQ Missense_Mutation p.A1720T 0.36 deleterious(0) possibly_damaging(0.899) TCGA-5M-AAT5-01 12 93793017 93793017 A G NUDT4 Silent p.V136V 0.10 TCGA-5M-AAT5-01 13 113803266 113803266 C T F10 Missense_Mutation p.A301V 0.45 tolerated(0.33) benign(0.001) TCGA-5M-AAT5-01 13 29002009 29002009 G A FLT1 Missense_Mutation p.R386C 0.04 tolerated(0.06) possibly_damaging(0.766) TCGA-5M-AAT5-01 13 45768751 45768751 T A KCTD4 5'UTR 0.26 TCGA-5M-AAT5-01 13 95818457 95818457 T C ABCC4 Silent p.Q663Q 0.38 TCGA-5M-AAT5-01 15 43690268 43690268 C T TUBGCP4 Missense_Mutation p.R437W 0.15 deleterious(0.01) possibly_damaging(0.663) TCGA-5M-AAT5-01 15 51806733 51806733 A C DMXL2 Silent p.L850L 0.20 TCGA-5M-AAT5-01 15 56923956 56923956 C A ZNF280D Missense_Mutation p.D894Y 0.16 deleterious(0) possibly_damaging(0.804) TCGA-5M-AAT5-01 15 75015139 75015139 G A CYP1A1 Silent p.G100G 0.44 TCGA-5M-AAT5-01 15 76484318 76484318 C T C15orf27 Missense_Mutation p.R260W 0.44 deleterious(0) possibly_damaging(0.855) TCGA-5M-AAT5-01 15 93588113 93588113 C T RGMA 3'UTR 0.48 TCGA-5M-AAT5-01 16 30751171 30751171 G T SRCAP 3'UTR 0.13 TCGA-5M-AAT5-01 16 614725 614725 C T C16orf11 Silent p.G378G 0.48 TCGA-5M-AAT5-01 16 75033565 75033565 C G ZNRF1 5'UTR 0.15 TCGA-5M-AAT5-01 16 89704578 89704578 G A DPEP1 Missense_Mutation p.G395E 0.81 tolerated_low_confidence(0.09) benign(0) TCGA-5M-AAT5-01 17 74449131 74449131 G T UBE2O Silent p.A31A 0.43 TCGA-5M-AAT5-01 17 7578205 7578205 C T TP53 Missense_Mutation p.S215N 0.68 deleterious(0) probably_damaging(1) TCGA-5M-AAT5-01 17 77016305 77016305 G C C1QTNF1-AS1 5'UTR 0.42 TCGA-5M-AAT5-01 19 30165329 30165329 C T PLEKHF1 Missense_Mutation p.R195C 0.11 tolerated(0.11) possibly_damaging(0.817) TCGA-5M-AAT5-01 19 39008113 39008113 C T RYR1 Missense_Mutation p.P3267L 0.44 benign(0.001) TCGA-5M-AAT5-01 19 47503596 47503598 ACA - ARHGAP35 In_Frame_Del p.N1386del 0.09 TCGA-5M-AAT5-01 19 5212055 5212055 C T PTPRS Missense_Mutation p.R1659H 0.31 deleterious(0.02) probably_damaging(0.984) TCGA-5M-AAT5-01 19 55877271 55877271 A G IL11 3'UTR 0.05 TCGA-5M-AAT5-01 19 5844775 5844775 C G FUT3 Missense_Mutation p.V26L 0.11 tolerated(1) benign(0.001) TCGA-5M-AAT5-01 1 152188465 152188465 C T HRNR Silent p.Q1880Q 0.09 TCGA-5M-AAT5-01 1 181548258 181548258 C T CACNA1E Nonsense_Mutation p.Q223* 0.31 TCGA-5M-AAT5-01 1 218614763 218614763 C T TGFB2 3'UTR 0.47 TCGA-5M-AAT5-01 1 237813372 237813372 G T RYR2 Nonsense_Mutation p.E2570* 0.06 TCGA-5M-AAT5-01 1 53927172 53927172 C T DMRTB1 Missense_Mutation p.R202C 0.45 tolerated(0.21) benign(0.001) TCGA-5M-AAT5-01 1 87031512 87031512 C T CLCA4 Missense_Mutation p.H255Y 0.71 deleterious(0) probably_damaging(1) TCGA-5M-AAT5-01 1 94574265 94574265 T C ABCA4 Missense_Mutation p.R104G 0.68 tolerated(0.06) benign(0.371) TCGA-5M-AAT5-01 20 1187656 1187656 C T C20orf202 Silent p.G93G 0.70 TCGA-5M-AAT5-01 20 19955639 19955639 C T RIN2 Missense_Mutation p.R373W 0.25 tolerated(0.05) benign(0.002) TCGA-5M-AAT5-01 20 23966738 23966738 G T GGTLC1 Silent p.P93P 0.04 TCGA-5M-AAT5-01 20 44806708 44806708 G A CDH22 Missense_Mutation p.R598C 0.23 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT5-01 20 48129746 48129746 G A PTGIS Silent p.R359R 0.22 TCGA-5M-AAT5-01 20 60348222 60348222 C T CDH4 Missense_Mutation p.P187L 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-5M-AAT5-01 20 9561319 9561319 C A PAK7 Missense_Mutation p.D155Y 0.66 deleterious(0.01) benign(0.049) TCGA-5M-AAT5-01 21 32638629 32638629 C T TIAM1 Silent p.P220P 0.75 TCGA-5M-AAT5-01 21 47641811 47641811 G A LSS Silent p.D169D 0.72 TCGA-5M-AAT5-01 22 30976640 30976640 C A PES1 Nonsense_Mutation p.E321* 0.27 TCGA-5M-AAT5-01 22 37154304 37154304 C A IFT27 3'UTR 0.18 TCGA-5M-AAT5-01 22 50488652 50488652 C T TTLL8 Missense_Mutation p.G62R 0.44 deleterious(0) probably_damaging(1) TCGA-5M-AAT5-01 2 110917813 110917813 C T NPHP1 Missense_Mutation p.R381H 0.38 tolerated(0.07) benign(0.329) TCGA-5M-AAT5-01 2 122217564 122217564 G T CLASP1 Silent p.I390I 0.46 TCGA-5M-AAT5-01 2 220037549 220037549 G C CNPPD1 Missense_Mutation p.T331S 0.40 tolerated_low_confidence(0.79) benign(0.002) TCGA-5M-AAT5-01 2 220497017 220497017 C T SLC4A3 Missense_Mutation p.R359C 0.34 deleterious(0) possibly_damaging(0.59) TCGA-5M-AAT5-01 2 230911293 230911293 G A SLC16A14 Silent p.C183C 0.44 TCGA-5M-AAT5-01 2 43452511 43452512 - C ZFP36L2 Frame_Shift_Ins p.G145Rfs*329 0.27 TCGA-5M-AAT5-01 2 71740998 71740998 C T DYSF Nonsense_Mutation p.R236* 0.37 TCGA-5M-AAT5-01 2 74756714 74756714 A G AUP1 Missense_Mutation p.S15P 0.44 tolerated(0.21) benign(0.246) TCGA-5M-AAT5-01 2 99234835 99234835 T C UNC50 3'UTR 0.41 TCGA-5M-AAT5-01 3 11078681 11078681 C A SLC6A1 3'UTR 0.38 TCGA-5M-AAT5-01 3 126137487 126137487 C T CCDC37 Missense_Mutation p.R174W 0.60 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT5-01 3 160150156 160150156 G A SMC4 Missense_Mutation p.R1128Q 0.46 deleterious(0) benign(0.273) TCGA-5M-AAT5-01 3 18393544 18393544 C G SATB1 Silent p.A573A 0.34 TCGA-5M-AAT5-01 3 193044828 193044828 C A ATP13A5 Missense_Mutation p.D494Y 0.47 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT5-01 3 197508781 197508781 G A FYTTD1 3'UTR 0.13 TCGA-5M-AAT5-01 3 19959817 19959817 G A EFHB Nonsense_Mutation p.R362* 0.43 TCGA-5M-AAT5-01 3 38316646 38316646 C A SLC22A13 Missense_Mutation p.F268L 0.38 tolerated(0.09) benign(0.02) TCGA-5M-AAT5-01 3 44945393 44945393 C T TGM4 Missense_Mutation p.T330M 0.34 deleterious(0) probably_damaging(0.964) TCGA-5M-AAT5-01 3 46417429 46417429 G A CCR5 3'UTR 0.53 TCGA-5M-AAT5-01 3 9768826 9768826 C T CPNE9 Missense_Mutation p.R478C 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-5M-AAT5-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.56 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT5-01 4 153896422 153896422 C A FHDC1 Missense_Mutation p.S660Y 0.22 deleterious(0.03) benign(0.405) TCGA-5M-AAT5-01 4 15437568 15437568 C T C1QTNF7 Silent p.D74D 0.17 TCGA-5M-AAT5-01 5 112137036 112137036 C T APC Nonsense_Mutation p.Q264* 0.31 TCGA-5M-AAT5-01 5 112175621 112175621 C T APC Nonsense_Mutation p.Q1444* 0.41 TCGA-5M-AAT5-01 5 129072856 129072856 G A ADAMTS19 Missense_Mutation p.R1190H 0.50 deleterious(0) probably_damaging(1) TCGA-5M-AAT5-01 5 135513181 135513182 - T SMAD5 3'UTR 0.21 TCGA-5M-AAT5-01 5 140582003 140582003 G T PCDHB11 3'UTR 0.38 TCGA-5M-AAT5-01 5 158139190 158139190 G A EBF1 Silent p.N507N 0.05 TCGA-5M-AAT5-01 5 159344142 159344142 G A ADRA1B Missense_Mutation p.R77Q 0.34 tolerated(0.43) probably_damaging(0.999) TCGA-5M-AAT5-01 5 162945230 162945230 G A MAT2B Missense_Mutation p.R289H 0.44 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT5-01 5 169483738 169483738 G A DOCK2 Missense_Mutation p.R1449H 0.32 tolerated(0.12) benign(0.042) TCGA-5M-AAT5-01 5 176025912 176025912 C T GPRIN1 Silent p.A308A 0.30 TCGA-5M-AAT5-01 5 179668031 179668031 G A MAPK9 Silent p.A332A 0.09 TCGA-5M-AAT5-01 6 109703436 109703436 G A CD164 Missense_Mutation p.S49F 0.47 deleterious(0.02) probably_damaging(0.99) TCGA-5M-AAT5-01 6 116818143 116818143 C T TRAPPC3L Missense_Mutation p.E174K 0.42 deleterious(0.02) unknown(0) TCGA-5M-AAT5-01 6 119399507 119399507 G A FAM184A 5'UTR 0.33 TCGA-5M-AAT5-01 6 146720211 146720211 C A GRM1 Missense_Mutation p.T679N 0.39 deleterious(0.03) probably_damaging(0.967) TCGA-5M-AAT5-01 6 152128995 152128995 G C ESR1 5'UTR 0.35 TCGA-5M-AAT5-01 6 43752518 43752518 C T VEGFA 3'Flank 0.41 TCGA-5M-AAT5-01 6 96657546 96657546 A G FUT9 3'UTR 0.38 TCGA-5M-AAT5-01 7 100028380 100028380 G - MEPCE Frame_Shift_Del p.E247Rfs*4 0.08 TCGA-5M-AAT5-01 7 135412289 135412289 G A SLC13A4 5'UTR 0.35 TCGA-5M-AAT5-01 7 23830450 23830450 G A STK31 Missense_Mutation p.R882Q 0.08 deleterious(0) probably_damaging(1) TCGA-5M-AAT5-01 7 43540360 43540360 C T HECW1 Missense_Mutation p.A1167V 0.43 tolerated(0.14) benign(0.029) TCGA-5M-AAT5-01 7 81372217 81372217 T C HGF Intron 0.10 TCGA-5M-AAT5-01 8 106431376 106431376 G A ZFPM2 Silent p.P15P 0.46 TCGA-5M-AAT5-01 8 134239654 134239654 G A WISP1 Missense_Mutation p.A269T 0.38 tolerated(0.49) benign(0.007) TCGA-5M-AAT5-01 8 144378317 144378317 T G ZNF696 Missense_Mutation p.C158G 0.46 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT5-01 8 144810362 144810362 G A FAM83H Silent p.F423F 0.36 TCGA-5M-AAT5-01 8 67578932 67578934 CCT - VCPIP1 In_Frame_Del p.E87del 0.23 TCGA-5M-AAT5-01 9 105767588 105767588 G T CYLC2 Missense_Mutation p.K225N 0.48 deleterious(0) unknown(0) TCGA-5M-AAT5-01 9 135374926 135374926 C T C9orf171 Missense_Mutation p.R191W 0.20 deleterious(0) probably_damaging(0.984) TCGA-5M-AAT5-01 9 136595202 136595202 G A SARDH Silent p.C266C 0.25 TCGA-5M-AAT5-01 9 137698107 137698107 G A COL5A1 Missense_Mutation p.G1111R 0.31 unknown(0) TCGA-5M-AAT5-01 9 32632076 32632076 C A TAF1L Missense_Mutation p.V1168F 0.44 deleterious(0.03) benign(0.003) TCGA-5M-AAT5-01 9 34491509 34491509 C T DNAI1 Missense_Mutation p.T213M 0.33 tolerated(0.25) benign(0.144) TCGA-5M-AAT5-01 9 84200514 84200514 G T TLE1 Missense_Mutation p.S678R 0.21 deleterious(0) possibly_damaging(0.719) TCGA-5M-AAT5-01 9 85928647 85928647 T A FRMD3 Silent p.P204P 0.48 TCGA-5M-AAT5-01 9 95608491 95608491 C T ZNF484 3'UTR 0.37 TCGA-5M-AAT5-01 X 102841149 102841149 C A TCEAL4 5'UTR 0.37 TCGA-5M-AAT5-01 X 106844947 106844947 C T FRMPD3 Silent p.T1259T 0.13 TCGA-5M-AAT5-01 X 107863583 107863583 C T COL4A5 Silent p.P868P 0.35 TCGA-5M-AAT5-01 X 135429803 135429803 A G GPR112 Missense_Mutation p.H1313R 0.23 tolerated(0.07) benign(0.163) TCGA-5M-AAT5-01 X 135487948 135487948 G T GPR112 Missense_Mutation p.V2918F 0.33 deleterious(0.05) benign(0.255) TCGA-5M-AAT5-01 X 138664563 138664564 - T MCF2 3'UTR 0.10 TCGA-5M-AAT5-01 X 154158427 154158427 A T F8 Missense_Mutation p.I1213N 0.35 deleterious(0.05) benign(0.288) TCGA-5M-AAT5-01 X 17771593 17771593 T G SCML1 3'UTR 0.35 TCGA-5M-AAT5-01 X 40465111 40465111 A T ATP6AP2 3'UTR 0.29 TCGA-5M-AAT5-01 X 63412110 63412110 G A AMER1 Nonsense_Mutation p.R353* 0.43 TCGA-5M-AAT5-01 X 79700470 79700470 G A FAM46D 3'UTR 0.11 TCGA-5M-AAT5-01 X 89177403 89177403 C T TGIF2LX Missense_Mutation p.R107C 0.43 tolerated(0.09) probably_damaging(0.996) TCGA-5M-AAT6-01 10 101657854 101657854 C T DNMBP Missense_Mutation p.R970Q 0.21 deleterious(0) possibly_damaging(0.872) TCGA-5M-AAT6-01 10 102743730 102743730 C T SEMA4G Missense_Mutation p.R792W 0.16 deleterious(0.01) probably_damaging(0.949) TCGA-5M-AAT6-01 10 102778788 102778788 G A PDZD7 Missense_Mutation p.T372M 0.15 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 10 102893977 102893977 G A TLX1 Missense_Mutation p.R205H 0.14 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 10 103827683 103827683 G T HPS6 3'UTR 0.15 TCGA-5M-AAT6-01 10 104122284 104122284 A G GBF1 Missense_Mutation p.D579G 0.09 deleterious(0) possibly_damaging(0.757) TCGA-5M-AAT6-01 10 104416672 104416672 C T TRIM8 Missense_Mutation p.A406V 0.21 tolerated_low_confidence(0.28) benign(0.069) TCGA-5M-AAT6-01 10 105138066 105138066 T C TAF5 Missense_Mutation p.M291T 0.11 deleterious(0) probably_damaging(0.939) TCGA-5M-AAT6-01 10 105172884 105172884 C T PDCD11 Silent p.C330C 0.11 TCGA-5M-AAT6-01 10 105883768 105883768 T C SFR1 Silent p.S144S 0.04 TCGA-5M-AAT6-01 10 111640623 111640623 A G XPNPEP1 Missense_Mutation p.S370P 0.20 deleterious(0.01) benign(0.033) TCGA-5M-AAT6-01 10 111667448 111667448 C T XPNPEP1 Splice_Site p.X82_splice 0.08 TCGA-5M-AAT6-01 10 115348621 115348621 A G NRAP 3'UTR 0.15 TCGA-5M-AAT6-01 10 116887435 116887435 T - ATRNL1 Frame_Shift_Del p.F192Lfs*8 0.09 TCGA-5M-AAT6-01 10 117704270 117704270 C T ATRNL1 Missense_Mutation p.R1374C 0.10 deleterious(0.03) possibly_damaging(0.543) TCGA-5M-AAT6-01 10 118639434 118639434 C T ENO4 Nonsense_Mutation p.R237* 0.10 TCGA-5M-AAT6-01 10 119043443 119043443 A G PDZD8 Missense_Mutation p.L934S 0.12 deleterious(0) probably_damaging(0.974) TCGA-5M-AAT6-01 10 120809362 120809362 C T EIF3A Missense_Mutation p.R870Q 0.09 tolerated(0.09) unknown(0) TCGA-5M-AAT6-01 10 121184560 121184560 T - GRK5 Frame_Shift_Del p.F167Lfs*15 0.13 TCGA-5M-AAT6-01 10 121196283 121196283 C T GRK5 Missense_Mutation p.R287W 0.10 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 10 121583396 121583396 T C INPP5F Missense_Mutation p.I744T 0.11 tolerated(0.13) benign(0.002) TCGA-5M-AAT6-01 10 121675324 121675324 C T SEC23IP Silent p.D489D 0.12 TCGA-5M-AAT6-01 10 123842738 123842738 G - TACC2 Frame_Shift_Del p.V243Wfs*6 0.14 TCGA-5M-AAT6-01 10 123842836 123842836 T C TACC2 Missense_Mutation p.M274T 0.14 benign(0.007) TCGA-5M-AAT6-01 10 125780833 125780833 C T CHST15 Missense_Mutation p.C429Y 0.11 deleterious(0) probably_damaging(0.958) TCGA-5M-AAT6-01 10 127726864 127726864 G A ADAM12 Silent p.L768L 0.18 TCGA-5M-AAT6-01 10 133930830 133930830 G A JAKMIP3 Missense_Mutation p.E129K 0.08 deleterious(0.01) benign(0.207) TCGA-5M-AAT6-01 10 134523949 134523949 C T INPP5A Silent p.Y212Y 0.10 TCGA-5M-AAT6-01 10 134733590 134733590 C T TTC40 Missense_Mutation p.R568H 0.19 tolerated(0.19) benign(0.187) TCGA-5M-AAT6-01 10 135082255 135082255 C T ADAM8 Missense_Mutation p.S687N 0.14 tolerated(0.22) benign(0.012) TCGA-5M-AAT6-01 10 135083930 135083930 C T ADAM8 Silent p.A573A 0.11 TCGA-5M-AAT6-01 10 135166053 135166053 C T PRAP1 3'UTR 0.13 TCGA-5M-AAT6-01 10 135170726 135170726 A G FUOM Missense_Mutation p.I40T 0.16 tolerated(0.09) benign(0.294) TCGA-5M-AAT6-01 10 13701409 13701409 G A FRMD4A Silent p.R660R 0.14 TCGA-5M-AAT6-01 10 15177286 15177286 C T NMT2 Silent p.P126P 0.15 TCGA-5M-AAT6-01 10 15646218 15646218 G A ITGA8 Missense_Mutation p.R703C 0.14 deleterious(0) probably_damaging(0.969) TCGA-5M-AAT6-01 10 16737065 16737065 C T RSU1 Missense_Mutation p.V230M 0.15 deleterious(0.02) benign(0.293) TCGA-5M-AAT6-01 10 22208767 22208767 T - DNAJC1 Frame_Shift_Del p.N210Mfs*5 0.13 TCGA-5M-AAT6-01 10 23482976 23482976 T C PTF1A 3'UTR 0.12 TCGA-5M-AAT6-01 10 24783446 24783446 T C KIAA1217 Missense_Mutation p.M566T 0.12 deleterious(0) probably_damaging(0.974) TCGA-5M-AAT6-01 10 27539623 27539623 T C RP11-85G18.6 RNA 0.11 TCGA-5M-AAT6-01 10 28228843 28228843 C T ARMC4 Missense_Mutation p.A694T 0.10 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 10 31133939 31133939 G A ZNF438 Missense_Mutation p.T813M 0.08 tolerated(0.13) possibly_damaging(0.799) TCGA-5M-AAT6-01 10 32311826 32311826 T - KIF5B Frame_Shift_Del p.M622Wfs*8 0.12 TCGA-5M-AAT6-01 10 32324889 32324889 C T KIF5B Missense_Mutation p.D249N 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-5M-AAT6-01 10 33217120 33217120 T C ITGB1 Missense_Mutation p.D150G 0.12 deleterious(0) possibly_damaging(0.614) TCGA-5M-AAT6-01 10 35930043 35930043 C T FZD8 Silent p.P105P 0.14 TCGA-5M-AAT6-01 10 395383 395383 C T DIP2C Silent p.A999A 0.36 TCGA-5M-AAT6-01 10 43655984 43655984 G A CSGALNACT2 Silent p.V307V 0.12 TCGA-5M-AAT6-01 10 43697297 43697297 C T RASGEF1A Missense_Mutation p.E140K 0.11 tolerated(0.19) benign(0.069) TCGA-5M-AAT6-01 10 43869132 43869132 C T FXYD4 5'UTR 0.12 TCGA-5M-AAT6-01 10 45430341 45430341 C A TMEM72 Missense_Mutation p.P196H 0.10 tolerated(0.19) benign(0.01) TCGA-5M-AAT6-01 10 46111928 46111928 C T ZFAND4 Missense_Mutation p.E714K 0.09 deleterious(0.02) probably_damaging(0.994) TCGA-5M-AAT6-01 10 50025395 50025395 C T WDFY4 Nonsense_Mutation p.R1816* 0.11 TCGA-5M-AAT6-01 10 50686456 50686456 G A ERCC6 Missense_Mutation p.R744W 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 10 51585043 51585043 C - NCOA4 Frame_Shift_Del p.S399Afs*18 0.13 TCGA-5M-AAT6-01 10 51826408 51826408 T C FAM21A 5'Flank 0.14 TCGA-5M-AAT6-01 10 51893218 51893218 G C FAM21A 3'Flank 0.12 TCGA-5M-AAT6-01 10 52573625 52573625 C T A1CF Missense_Mutation p.A447T 0.09 deleterious(0.01) possibly_damaging(0.819) TCGA-5M-AAT6-01 10 5435983 5435983 C T TUBAL3 Missense_Mutation p.A280T 0.13 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-5M-AAT6-01 10 5762593 5762593 G A FAM208B 5'UTR 0.15 TCGA-5M-AAT6-01 10 61830684 61830684 C T ANK3 Missense_Mutation p.D3319N 0.15 probably_damaging(0.978) TCGA-5M-AAT6-01 10 61833288 61833288 C T ANK3 Missense_Mutation p.D2451N 0.12 probably_damaging(0.978) TCGA-5M-AAT6-01 10 61958170 61958170 G A ANK3 Silent p.S539S 0.19 TCGA-5M-AAT6-01 10 62545471 62545471 T C CDK1 Missense_Mutation p.F82L 0.10 deleterious(0.02) probably_damaging(0.914) TCGA-5M-AAT6-01 10 63978006 63978006 G A RTKN2 Missense_Mutation p.A279V 0.10 tolerated(0.06) benign(0.053) TCGA-5M-AAT6-01 10 70405123 70405123 G A TET1 Silent p.S879S 0.11 TCGA-5M-AAT6-01 10 70742427 70742427 G A DDX21 Silent p.Q737Q 0.13 TCGA-5M-AAT6-01 10 71849835 71849835 C T H2AFY2 Silent p.A64A 0.17 TCGA-5M-AAT6-01 10 71868815 71868815 G A H2AFY2 Missense_Mutation p.A269T 0.13 tolerated(0.09) benign(0.381) TCGA-5M-AAT6-01 10 7230671 7230671 C T SFMBT2 Missense_Mutation p.A575T 0.09 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 10 7262415 7262415 C T SFMBT2 Missense_Mutation p.V430I 0.20 tolerated(0.55) benign(0.05) TCGA-5M-AAT6-01 10 72644920 72644920 C T PCBD1 Missense_Mutation p.V69M 0.11 deleterious(0) possibly_damaging(0.667) TCGA-5M-AAT6-01 10 73521519 73521519 C T C10orf54 Missense_Mutation p.R116H 0.16 tolerated(0.81) benign(0.012) TCGA-5M-AAT6-01 10 73767334 73767334 C T CHST3 Missense_Mutation p.A182V 0.22 tolerated(0.44) benign(0.022) TCGA-5M-AAT6-01 10 75006835 75006835 A G DNAJC9 Missense_Mutation p.V38A 0.10 tolerated(0.36) benign(0.02) TCGA-5M-AAT6-01 10 75034257 75034257 T C TTC18 Silent p.V993V 0.14 TCGA-5M-AAT6-01 10 75290467 75290467 C T USP54 Missense_Mutation p.S481N 0.14 deleterious(0) benign(0.285) TCGA-5M-AAT6-01 10 75551887 75551888 - C ZSWIM8 Frame_Shift_Ins p.R532Pfs*6 0.12 TCGA-5M-AAT6-01 10 75865105 75865105 G A VCL Missense_Mutation p.D810N 0.12 tolerated(0.15) benign(0.038) TCGA-5M-AAT6-01 10 76854459 76854459 A G DUSP13 Missense_Mutation p.L241P 0.10 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 10 79397098 79397098 G A KCNMA1 Silent p.G101G 0.15 TCGA-5M-AAT6-01 10 8097643 8097643 C T GATA3 Missense_Mutation p.R9C 0.07 deleterious(0) probably_damaging(0.97) TCGA-5M-AAT6-01 10 81072550 81072550 C A ZMIZ1 3'UTR 0.09 TCGA-5M-AAT6-01 10 81928743 81928743 G A ANXA11 Silent p.P181P 0.17 TCGA-5M-AAT6-01 10 84498378 84498378 G A NRG3 Silent p.P333P 0.11 TCGA-5M-AAT6-01 10 85981910 85981910 C T LRIT2 Silent p.V473V 0.14 TCGA-5M-AAT6-01 10 87362279 87362279 G A GRID1 Silent p.V927V 0.26 TCGA-5M-AAT6-01 10 88260478 88260478 T C WAPAL Silent p.E174E 0.11 TCGA-5M-AAT6-01 10 88703187 88703187 C G MMRN2 Missense_Mutation p.E452Q 0.13 deleterious(0) probably_damaging(0.992) TCGA-5M-AAT6-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.09 TCGA-5M-AAT6-01 10 89118048 89118048 A G NUTM2D Missense_Mutation p.Q9R 0.07 tolerated_low_confidence(0.73) benign(0) TCGA-5M-AAT6-01 10 90683181 90683181 T C STAMBPL1 3'UTR 0.16 TCGA-5M-AAT6-01 10 90750636 90750636 G A FAS Translation_Start_Site p.M1? 0.13 deleterious(0.01) possibly_damaging(0.626) TCGA-5M-AAT6-01 10 90966724 90966724 C T CH25H Missense_Mutation p.R109H 0.15 tolerated(0.54) benign(0.003) TCGA-5M-AAT6-01 10 91497815 91497815 A - KIF20B Frame_Shift_Del p.S1035Vfs*18 0.20 TCGA-5M-AAT6-01 10 93615387 93615387 G A TNKS2 Missense_Mutation p.R977Q 0.15 tolerated(0.05) probably_damaging(0.978) TCGA-5M-AAT6-01 10 93788723 93788723 T C BTAF1 3'UTR 0.20 TCGA-5M-AAT6-01 10 94234712 94234712 G A IDE Nonsense_Mutation p.R668* 0.13 TCGA-5M-AAT6-01 10 94454423 94454423 G A HHEX Silent p.S237S 0.13 TCGA-5M-AAT6-01 10 95276809 95276809 G A CEP55 Missense_Mutation p.R266Q 0.12 tolerated(0.76) benign(0.003) TCGA-5M-AAT6-01 10 95557305 95557305 G A LGI1 Silent p.S473S 0.16 TCGA-5M-AAT6-01 10 96018661 96018661 A G PLCE1 Missense_Mutation p.E1220G 0.10 deleterious(0) benign(0.102) TCGA-5M-AAT6-01 10 97101169 97101169 T C SORBS1 Splice_Site p.X849_splice 0.21 TCGA-5M-AAT6-01 10 97918442 97918442 A G ZNF518A RNA 0.20 TCGA-5M-AAT6-01 10 97919052 97919052 C T ZNF518A RNA 0.10 TCGA-5M-AAT6-01 10 98743006 98743006 G A C10orf12 Missense_Mutation p.S620N 0.17 tolerated(0.11) benign(0.031) TCGA-5M-AAT6-01 10 98778761 98778761 G A SLIT1 Silent p.C950C 0.21 TCGA-5M-AAT6-01 10 99211551 99211551 G A ZDHHC16 Missense_Mutation p.R40H 0.17 tolerated(0.42) benign(0.003) TCGA-5M-AAT6-01 10 99338353 99338353 G A ANKRD2 Silent p.T176T 0.16 TCGA-5M-AAT6-01 10 99343622 99343622 A - ANKRD2 3'Flank 0.11 TCGA-5M-AAT6-01 10 99376491 99376491 C T MORN4 Missense_Mutation p.R79Q 0.12 deleterious(0) possibly_damaging(0.553) TCGA-5M-AAT6-01 11 1015799 1015799 C T MUC6 Silent p.P2334P 0.16 TCGA-5M-AAT6-01 11 101937275 101937275 T - C11orf70 Frame_Shift_Del p.H112Ifs*19 0.18 TCGA-5M-AAT6-01 11 102567483 102567483 A G MMP27 Missense_Mutation p.F235L 0.18 deleterious(0) possibly_damaging(0.818) TCGA-5M-AAT6-01 11 104868208 104868208 A G CASP5 Missense_Mutation p.W383R 0.11 deleterious(0.01) possibly_damaging(0.655) TCGA-5M-AAT6-01 11 1078097 1078097 T C MUC2 Missense_Mutation p.L155P 0.12 probably_damaging(0.995) TCGA-5M-AAT6-01 11 10800359 10800359 C T CTR9 Nonsense_Mutation p.R1077* 0.14 TCGA-5M-AAT6-01 11 108017054 108017054 T C ACAT1 Silent p.N377N 0.22 TCGA-5M-AAT6-01 11 1081694 1081694 C T MUC2 Missense_Mutation p.T541M 0.11 probably_damaging(1) TCGA-5M-AAT6-01 11 108381657 108381657 T C EXPH5 Missense_Mutation p.D1526G 0.07 tolerated(1) benign(0.001) TCGA-5M-AAT6-01 11 10874300 10874300 A - ZBED5 3'UTR 0.23 TCGA-5M-AAT6-01 11 111572233 111572233 A G SIK2 Missense_Mutation p.T221A 0.15 deleterious(0) possibly_damaging(0.575) TCGA-5M-AAT6-01 11 111582972 111582972 C T SIK2 Missense_Mutation p.P380L 0.19 tolerated(0.43) benign(0.079) TCGA-5M-AAT6-01 11 112065475 112065475 T C BCO2 Missense_Mutation p.Y245H 0.09 tolerated(0.34) benign(0) TCGA-5M-AAT6-01 11 112131222 112131222 T C PLET1 Missense_Mutation p.S31G 0.14 tolerated(0.07) possibly_damaging(0.682) TCGA-5M-AAT6-01 11 113186971 113186971 C T TTC12 5'UTR 0.14 TCGA-5M-AAT6-01 11 113675651 113675651 T C USP28 Missense_Mutation p.R840G 0.09 deleterious(0.01) possibly_damaging(0.597) TCGA-5M-AAT6-01 11 113935000 113935000 G A ZBTB16 Silent p.P326P 0.21 TCGA-5M-AAT6-01 11 114393797 114393798 TT - NXPE1 Frame_Shift_Del p.E162Gfs*35 0.10 TCGA-5M-AAT6-01 11 118023467 118023467 C T SCN4B 5'UTR 0.09 TCGA-5M-AAT6-01 11 118360946 118360946 G A KMT2A Missense_Mutation p.A1560T 0.15 benign(0.069) TCGA-5M-AAT6-01 11 118402960 118402960 G - TMEM25 Frame_Shift_Del p.P58Lfs*23 0.13 TCGA-5M-AAT6-01 11 118405277 118405277 T C TMEM25 Silent p.S361S 0.12 TCGA-5M-AAT6-01 11 118499080 118499080 G A PHLDB1 Missense_Mutation p.R514H 0.22 tolerated(0.4) benign(0.002) TCGA-5M-AAT6-01 11 118828830 118828830 C T UPK2 Silent p.L148L 0.16 TCGA-5M-AAT6-01 11 119183095 119183095 T C MCAM Missense_Mutation p.N302S 0.15 tolerated(0.5) benign(0.232) TCGA-5M-AAT6-01 11 120099669 120099669 T G OAF Missense_Mutation p.C214G 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-5M-AAT6-01 11 121000400 121000400 A G TECTA Silent p.E807E 0.11 TCGA-5M-AAT6-01 11 121986214 121986214 T C BLID 3'UTR 0.17 TCGA-5M-AAT6-01 11 122526655 122526655 C T UBASH3B 5'UTR 0.14 TCGA-5M-AAT6-01 11 122954439 122954439 T G CLMP Missense_Mutation p.I169L 0.16 tolerated(0.08) benign(0.009) TCGA-5M-AAT6-01 11 123756072 123756072 C T TMEM225 Missense_Mutation p.V21I 0.15 tolerated(0.86) benign(0) TCGA-5M-AAT6-01 11 124252847 124252847 C T OR8B2 Silent p.L131L 0.12 TCGA-5M-AAT6-01 11 124413197 124413197 C T OR8B12 Silent p.A118A 0.15 TCGA-5M-AAT6-01 11 124746333 124746333 G A ROBO3 Missense_Mutation p.R919H 0.15 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 11 124766926 124766926 T C ROBO4 Missense_Mutation p.D101G 0.12 tolerated_low_confidence(0.07) benign(0.002) TCGA-5M-AAT6-01 11 124875028 124875028 T C CCDC15 Silent p.H777H 0.15 TCGA-5M-AAT6-01 11 129728591 129728591 G A TMEM45B 3'UTR 0.18 TCGA-5M-AAT6-01 11 129751999 129751999 A G NFRKB Silent p.S416S 0.16 TCGA-5M-AAT6-01 11 129814667 129814667 T C PRDM10 Missense_Mutation p.K254R 0.17 tolerated(0.05) benign(0.095) TCGA-5M-AAT6-01 11 134113032 134113032 A G VPS26B Missense_Mutation p.I189V 0.10 tolerated(0.23) possibly_damaging(0.495) TCGA-5M-AAT6-01 11 134119736 134119736 C T THYN1 Missense_Mutation p.A124T 0.17 tolerated(0.08) possibly_damaging(0.457) TCGA-5M-AAT6-01 11 134252734 134252734 C T B3GAT1 Missense_Mutation p.R263Q 0.21 tolerated(0.95) benign(0.008) TCGA-5M-AAT6-01 11 16812632 16812632 G A PLEKHA7 Missense_Mutation p.R954W 0.21 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 11 17415242 17415242 A G ABCC8 Splice_Site p.X1536_splice 0.20 TCGA-5M-AAT6-01 11 17632528 17632528 C T OTOG Missense_Mutation p.T1906M 0.16 benign(0.006) TCGA-5M-AAT6-01 11 1776246 1776246 C T RP11-295K3.1 Silent p.A110A 0.12 TCGA-5M-AAT6-01 11 18231156 18231156 T C RP11-113D6.10 5'UTR 0.21 TCGA-5M-AAT6-01 11 18320416 18320416 G A HPS5 Missense_Mutation p.R363C 0.13 deleterious(0) probably_damaging(0.968) TCGA-5M-AAT6-01 11 20652329 20652329 G A SLC6A5 Missense_Mutation p.R531H 0.12 tolerated(0.06) benign(0.231) TCGA-5M-AAT6-01 11 21592331 21592331 C T NELL1 Missense_Mutation p.R668W 0.14 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 11 27389488 27389488 G A LGR4 Nonsense_Mutation p.R928* 0.15 TCGA-5M-AAT6-01 11 28056986 28056986 G A KIF18A Missense_Mutation p.P818S 0.15 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 11 2905028 2905028 C T CDKN1C 3'UTR 0.14 TCGA-5M-AAT6-01 11 31312195 31312195 T C DCDC1 Missense_Mutation p.K320R 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-5M-AAT6-01 11 32949628 32949628 C T QSER1 Missense_Mutation p.T19I 0.09 deleterious(0.01) benign(0.432) TCGA-5M-AAT6-01 11 34167706 34167707 - A NAT10 Frame_Shift_Ins p.D1018Rfs*19 0.13 TCGA-5M-AAT6-01 11 34680080 34680080 A G EHF Missense_Mutation p.N225S 0.14 tolerated(0.47) benign(0.08) TCGA-5M-AAT6-01 11 36511953 36511953 C T TRAF6 Missense_Mutation p.R335Q 0.18 tolerated(0.29) probably_damaging(0.99) TCGA-5M-AAT6-01 11 3720389 3720389 T - NUP98 Frame_Shift_Del p.N1311Tfs*89 0.11 TCGA-5M-AAT6-01 11 375877 375877 A G B4GALNT4 Missense_Mutation p.N339S 0.15 tolerated(0.2) benign(0.119) TCGA-5M-AAT6-01 11 397258 397258 C T PKP3 Nonsense_Mutation p.R253* 0.13 TCGA-5M-AAT6-01 11 43941594 43941594 C T ALKBH3 3'UTR 0.19 TCGA-5M-AAT6-01 11 44265726 44265726 A G EXT2 Silent p.S715S 0.14 TCGA-5M-AAT6-01 11 4510759 4510759 T C OR52K1 Missense_Mutation p.V210A 0.16 tolerated(0.1) benign(0.142) TCGA-5M-AAT6-01 11 45204517 45204517 C T PRDM11 Missense_Mutation p.A110V 0.15 tolerated(0.1) possibly_damaging(0.88) TCGA-5M-AAT6-01 11 45918360 45918360 C - MAPK8IP1 Intron 0.13 TCGA-5M-AAT6-01 11 46354989 46354989 T C DGKZ Missense_Mutation p.V55A 0.13 tolerated_low_confidence(0.12) benign(0.006) TCGA-5M-AAT6-01 11 46406863 46406863 G T CHRM4 Silent p.P415P 0.10 TCGA-5M-AAT6-01 11 46564752 46564752 G A AMBRA1 Intron 0.17 TCGA-5M-AAT6-01 11 4674184 4674184 G A OR51E1 Missense_Mutation p.R143H 0.15 deleterious(0.03) possibly_damaging(0.781) TCGA-5M-AAT6-01 11 47182821 47182821 C T C11orf49 Intron 0.11 TCGA-5M-AAT6-01 11 47183083 47183083 G A C11orf49 Missense_Mutation p.R303Q 0.12 deleterious_low_confidence(0.04) probably_damaging(0.945) TCGA-5M-AAT6-01 11 47372965 47372965 C A MYBPC3 Missense_Mutation p.K39N 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.794) TCGA-5M-AAT6-01 11 47436939 47436939 C - SLC39A13 3'UTR 0.23 TCGA-5M-AAT6-01 11 47600677 47600677 C T NDUFS3 Missense_Mutation p.R12C 0.11 deleterious(0) benign(0.386) TCGA-5M-AAT6-01 11 47612073 47612073 T C C1QTNF4 Missense_Mutation p.N97S 0.05 deleterious(0.01) benign(0.009) TCGA-5M-AAT6-01 11 48188951 48188951 G A PTPRJ 3'UTR 0.08 TCGA-5M-AAT6-01 11 4903989 4903989 C A OR51T1 Missense_Mutation p.P314H 0.15 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 11 499028 499028 G A RNH1 Silent p.L201L 0.20 TCGA-5M-AAT6-01 11 49974490 49974490 A G OR4C13 Missense_Mutation p.I172M 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.841) TCGA-5M-AAT6-01 11 5153676 5153676 G A OR52A5 Missense_Mutation p.A66V 0.08 deleterious(0.02) benign(0.111) TCGA-5M-AAT6-01 11 5363999 5363999 T G OR51B5 Silent p.T252T 0.15 TCGA-5M-AAT6-01 11 540722 540722 G A LRRC56 Missense_Mutation p.R13Q 0.14 deleterious(0) benign(0.093) TCGA-5M-AAT6-01 11 5474814 5474814 C T OR51I2 Silent p.C32C 0.17 TCGA-5M-AAT6-01 11 55406192 55406192 G A OR4P4 Missense_Mutation p.R120H 0.13 deleterious(0.05) benign(0.165) TCGA-5M-AAT6-01 11 55861691 55861691 T C OR8I2 Missense_Mutation p.V303A 0.16 tolerated(0.16) benign(0.002) TCGA-5M-AAT6-01 11 56185536 56185536 G T OR5R1 Missense_Mutation p.P58H 0.16 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 11 56309864 56309864 A G OR5M11 Silent p.S290S 0.12 TCGA-5M-AAT6-01 11 57076972 57076972 A G TNKS1BP1 Silent p.P1071P 0.14 TCGA-5M-AAT6-01 11 57088030 57088030 A G TNKS1BP1 Missense_Mutation p.L84P 0.16 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 11 57948843 57948843 G A OR9Q1 3'UTR 0.15 TCGA-5M-AAT6-01 11 58893062 58893062 A - FAM111B Frame_Shift_Del p.N499Tfs*10 0.10 TCGA-5M-AAT6-01 11 59481081 59481081 A G OR10V1 Silent p.L80L 0.16 TCGA-5M-AAT6-01 11 59611353 59611353 G A GIF Silent p.N85N 0.13 TCGA-5M-AAT6-01 11 60670315 60670315 C T PRPF19 Silent p.Q95Q 0.12 TCGA-5M-AAT6-01 11 61133756 61133756 A G TMEM138 Intron 0.12 TCGA-5M-AAT6-01 11 61161442 61161442 T - TMEM216 Frame_Shift_Del p.F76Lfs*20 0.12 TCGA-5M-AAT6-01 11 611718 611718 C T PHRF1 Missense_Mutation p.R1630C 0.21 deleterious(0) probably_damaging(0.942) TCGA-5M-AAT6-01 11 612655 612655 T G IRF7 Missense_Mutation p.Q514P 0.12 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-5M-AAT6-01 11 61286182 61286182 C T SYT7 Missense_Mutation p.G452R 0.17 deleterious(0) possibly_damaging(0.868) TCGA-5M-AAT6-01 11 61488335 61488335 A G DAGLA Missense_Mutation p.M94V 0.10 tolerated(0.4) benign(0.002) TCGA-5M-AAT6-01 11 61732970 61732970 G A FTH1 Silent p.R44R 0.14 TCGA-5M-AAT6-01 11 62290002 62290002 C T AHNAK Missense_Mutation p.V3963I 0.11 benign(0.009) TCGA-5M-AAT6-01 11 62295076 62295076 G A AHNAK Silent p.D2271D 0.11 TCGA-5M-AAT6-01 11 62296298 62296298 A G AHNAK Missense_Mutation p.L1864P 0.10 possibly_damaging(0.883) TCGA-5M-AAT6-01 11 62301443 62301443 C T AHNAK Missense_Mutation p.R149H 0.14 probably_damaging(0.998) TCGA-5M-AAT6-01 11 62370107 62370107 C T EML3 Missense_Mutation p.S844N 0.16 tolerated(1) benign(0.03) TCGA-5M-AAT6-01 11 62396401 62396401 G A GANAB Missense_Mutation p.R696W 0.10 deleterious(0.01) possibly_damaging(0.754) TCGA-5M-AAT6-01 11 62407174 62407174 A - GANAB Frame_Shift_Del p.L23* 0.13 TCGA-5M-AAT6-01 11 62677645 62677645 C T CHRM1 Missense_Mutation p.E310K 0.14 tolerated(0.79) benign(0.163) TCGA-5M-AAT6-01 11 63532524 63532524 C - C11orf95 RNA 0.09 TCGA-5M-AAT6-01 11 63679601 63679601 C T RCOR2 Silent p.A436A 0.33 TCGA-5M-AAT6-01 11 63886111 63886111 A G FLRT1 3'UTR 0.15 TCGA-5M-AAT6-01 11 64023952 64023952 G A PLCB3 Missense_Mutation p.R268Q 0.13 deleterious(0.05) benign(0.064) TCGA-5M-AAT6-01 11 64068213 64068213 C T TEX40 Silent p.L36L 0.14 TCGA-5M-AAT6-01 11 64136064 64136064 T C RPS6KA4 Missense_Mutation p.L442P 0.09 deleterious(0) probably_damaging(0.934) TCGA-5M-AAT6-01 11 64374900 64374900 G A NRXN2 Missense_Mutation p.T1636M 0.17 deleterious(0.01) benign(0.363) TCGA-5M-AAT6-01 11 64518861 64518861 C T PYGM Silent p.P635P 0.17 TCGA-5M-AAT6-01 11 64621930 64621930 C T EHD1 Missense_Mutation p.G494R 0.16 deleterious(0) probably_damaging(0.975) TCGA-5M-AAT6-01 11 64678388 64678388 C T ATG2A Missense_Mutation p.R502Q 0.14 tolerated(0.1) benign(0.03) TCGA-5M-AAT6-01 11 64680765 64680765 G A ATG2A Silent p.R233R 0.18 TCGA-5M-AAT6-01 11 64694198 64694198 G A PPP2R5B Missense_Mutation p.E72K 0.13 deleterious(0.04) probably_damaging(0.974) TCGA-5M-AAT6-01 11 64701606 64701606 C T PPP2R5B 3'UTR 0.14 TCGA-5M-AAT6-01 11 64812884 64812884 C T NAALADL1 Silent p.P694P 0.15 TCGA-5M-AAT6-01 11 65361001 65361001 G A KCNK7 Missense_Mutation p.R222C 0.08 deleterious(0.01) possibly_damaging(0.806) TCGA-5M-AAT6-01 11 65365683 65365683 G T MAP3K11 3'UTR 0.20 TCGA-5M-AAT6-01 11 65402472 65402472 G A PCNXL3 Missense_Mutation p.A1612T 0.10 tolerated(0.2) possibly_damaging(0.804) TCGA-5M-AAT6-01 11 65416754 65416754 G A SIPA1 Silent p.T776T 0.17 TCGA-5M-AAT6-01 11 65635872 65635872 C T EFEMP2 Missense_Mutation p.G290S 0.11 deleterious(0.01) possibly_damaging(0.742) TCGA-5M-AAT6-01 11 65790511 65790511 C T CATSPER1 Missense_Mutation p.R413H 0.26 tolerated(1) benign(0) TCGA-5M-AAT6-01 11 6586948 6586949 - AG DNHD1 Frame_Shift_Ins p.S3597Rfs*6 0.09 TCGA-5M-AAT6-01 11 66062356 66062356 C T TMEM151A Silent p.H213H 0.15 TCGA-5M-AAT6-01 11 66083066 66083066 C T CD248 Missense_Mutation p.R478H 0.13 deleterious_low_confidence(0.01) benign(0.188) TCGA-5M-AAT6-01 11 66114094 66114094 G A B3GNT1 Missense_Mutation p.P308L 0.14 tolerated(0.06) probably_damaging(0.948) TCGA-5M-AAT6-01 11 66299383 66299383 G T BBS1 Intron 0.12 TCGA-5M-AAT6-01 11 66313260 66313260 A G ZDHHC24 Missense_Mutation p.F72S 0.16 tolerated(0.09) probably_damaging(0.986) TCGA-5M-AAT6-01 11 66391955 66391955 G A RBM14 Missense_Mutation p.R203H 0.11 deleterious(0) possibly_damaging(0.749) TCGA-5M-AAT6-01 11 66457516 66457516 C T SPTBN2 Missense_Mutation p.R1935H 0.12 deleterious(0) probably_damaging(0.919) TCGA-5M-AAT6-01 11 6647563 6647563 G T DCHS1 Missense_Mutation p.P2138Q 0.18 deleterious(0.02) probably_damaging(0.951) TCGA-5M-AAT6-01 11 66618225 66618225 G A PC Missense_Mutation p.A798V 0.11 tolerated(1) benign(0.001) TCGA-5M-AAT6-01 11 67176565 67176565 C - TBC1D10C Frame_Shift_Del p.A321Rfs*100 0.13 TCGA-5M-AAT6-01 11 674597 674597 C T DEAF1 Missense_Mutation p.S481N 0.12 tolerated(0.07) benign(0.276) TCGA-5M-AAT6-01 11 67804000 67804000 C T NDUFS8 Silent p.N191N 0.20 TCGA-5M-AAT6-01 11 68029710 68029710 G T C11orf24 Silent p.P251P 0.19 TCGA-5M-AAT6-01 11 68549347 68549347 G A CPT1A Missense_Mutation p.A415V 0.09 deleterious(0.01) possibly_damaging(0.51) TCGA-5M-AAT6-01 11 68825135 68825135 C T TPCN2 Silent p.T173T 0.12 TCGA-5M-AAT6-01 11 70052716 70052716 A G FADD 3'UTR 0.33 TCGA-5M-AAT6-01 11 70332267 70332267 C T SHANK2 Silent p.A1378A 0.21 TCGA-5M-AAT6-01 11 71726836 71726836 C T NUMA1 Silent p.A571A 0.09 TCGA-5M-AAT6-01 11 72006595 72006595 G A CLPB Missense_Mutation p.A506V 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-5M-AAT6-01 11 72396719 72396719 C T ARAP1 Missense_Mutation p.R1448H 0.14 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-5M-AAT6-01 11 73067790 73067790 A G ARHGEF17 Missense_Mutation p.M1293V 0.20 tolerated(0.08) benign(0.001) TCGA-5M-AAT6-01 11 73122520 73122520 G - FAM168A Frame_Shift_Del p.Y114Tfs*89 0.17 TCGA-5M-AAT6-01 11 73516097 73516097 T - MRPL48 Frame_Shift_Del p.F17Lfs*8 0.08 TCGA-5M-AAT6-01 11 73825472 73825472 T - C2CD3 Frame_Shift_Del p.S563Afs*9 0.12 TCGA-5M-AAT6-01 11 74015350 74015350 A G P4HA3 Missense_Mutation p.V103A 0.09 deleterious(0.01) benign(0.396) TCGA-5M-AAT6-01 11 74168329 74168329 C T KCNE3 Missense_Mutation p.V94M 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-5M-AAT6-01 11 7441824 7441824 A G SYT9 Silent p.S475S 0.21 TCGA-5M-AAT6-01 11 74559319 74559319 C T XRRA1 Silent p.P515P 0.17 TCGA-5M-AAT6-01 11 74799963 74799963 C T OR2AT4 Missense_Mutation p.A266T 0.11 tolerated(0.17) benign(0.159) TCGA-5M-AAT6-01 11 76826503 76826503 C T CAPN5 Silent p.Y254Y 0.18 TCGA-5M-AAT6-01 11 76869413 76869413 G A MYO7A Missense_Mutation p.E314K 0.12 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 11 77667057 77667057 C T INTS4 Silent p.A283A 0.14 TCGA-5M-AAT6-01 11 792633 792633 C T SLC25A22 Silent p.T169T 0.10 TCGA-5M-AAT6-01 11 800406 800406 G A PIDD Missense_Mutation p.S696L 0.09 deleterious(0) possibly_damaging(0.848) TCGA-5M-AAT6-01 11 82877596 82877596 C T PCF11 Missense_Mutation p.R553W 0.13 deleterious(0.01) probably_damaging(0.984) TCGA-5M-AAT6-01 11 83984289 83984289 G A DLG2 Intron 0.14 TCGA-5M-AAT6-01 11 85375855 85375855 C T CREBZF Missense_Mutation p.S22N 0.15 tolerated_low_confidence(0.18) possibly_damaging(0.878) TCGA-5M-AAT6-01 11 86106395 86106395 C T CCDC81 Missense_Mutation p.S192L 0.06 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 11 8751696 8751696 C T ST5 Missense_Mutation p.D381N 0.15 tolerated(0.51) benign(0.001) TCGA-5M-AAT6-01 11 88338044 88338044 G A GRM5 Silent p.H412H 0.09 TCGA-5M-AAT6-01 11 893505 893505 A G CHID1 Missense_Mutation p.M233T 0.14 deleterious(0.04) benign(0.363) TCGA-5M-AAT6-01 11 89531676 89531676 A G TRIM49 Silent p.S327S 0.10 TCGA-5M-AAT6-01 11 9080850 9080850 C A SCUBE2 Missense_Mutation p.D364Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-5M-AAT6-01 11 96124122 96124122 A - JRKL Frame_Shift_Del p.R105Gfs*22 0.12 TCGA-5M-AAT6-01 12 10223944 10223944 G A CLEC1A Silent p.G277G 0.20 TCGA-5M-AAT6-01 12 103696328 103696328 G T C12orf42 Missense_Mutation p.A214D 0.07 tolerated(0.49) probably_damaging(0.917) TCGA-5M-AAT6-01 12 104383167 104383167 T - GLT8D2 3'UTR 0.11 TCGA-5M-AAT6-01 12 104480794 104480794 T C HCFC2 Splice_Site p.X411_splice 0.12 TCGA-5M-AAT6-01 12 104995723 104995723 G A CHST11 Missense_Mutation p.R53Q 0.17 tolerated(0.4) benign(0.005) TCGA-5M-AAT6-01 12 106464625 106464625 G A NUAK1 Silent p.F253F 0.14 TCGA-5M-AAT6-01 12 107114636 107114636 C T RFX4 Missense_Mutation p.H454Y 0.12 deleterious(0.01) possibly_damaging(0.67) TCGA-5M-AAT6-01 12 107937726 107937726 C T BTBD11 Missense_Mutation p.R434C 0.09 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 12 108620879 108620879 C T WSCD2 Missense_Mutation p.A306V 0.12 tolerated(0.15) probably_damaging(0.932) TCGA-5M-AAT6-01 12 108931365 108931365 A G SART3 Missense_Mutation p.F403S 0.12 deleterious(0) probably_damaging(0.937) TCGA-5M-AAT6-01 12 110252251 110252251 G T TRPV4 Silent p.S117S 0.04 TCGA-5M-AAT6-01 12 110346392 110346392 C T TCHP Missense_Mutation p.A234V 0.11 deleterious(0.01) probably_damaging(1) TCGA-5M-AAT6-01 12 111088011 111088011 C T HVCN1 Missense_Mutation p.A240T 0.13 tolerated(0.83) benign(0.004) TCGA-5M-AAT6-01 12 11244800 11244801 - A TAS2R43 Frame_Shift_Ins p.S10Ffs*15 0.10 TCGA-5M-AAT6-01 12 112572814 112572814 T C TRAFD1 Intron 0.12 TCGA-5M-AAT6-01 12 113405767 113405767 C T OAS3 Silent p.G964G 0.12 TCGA-5M-AAT6-01 12 113610341 113610341 C A DDX54 Missense_Mutation p.A366S 0.09 tolerated(0.5) benign(0.019) TCGA-5M-AAT6-01 12 113806985 113806985 G A PLBD2 Missense_Mutation p.G119S 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 12 114380188 114380188 C T RBM19 Missense_Mutation p.V560I 0.26 deleterious(0) probably_damaging(0.962) TCGA-5M-AAT6-01 12 117922298 117922298 G A KSR2 Silent p.N791N 0.20 TCGA-5M-AAT6-01 12 120110160 120110160 A G PRKAB1 Missense_Mutation p.K72E 0.18 tolerated(0.18) probably_damaging(0.997) TCGA-5M-AAT6-01 12 120135562 120135562 C T CIT Silent p.A1928A 0.16 TCGA-5M-AAT6-01 12 120596270 120596270 C - GCN1L1 Frame_Shift_Del p.E967Sfs*14 0.11 TCGA-5M-AAT6-01 12 121176114 121176114 C T ACADS Missense_Mutation p.T219M 0.18 tolerated(0.14) possibly_damaging(0.654) TCGA-5M-AAT6-01 12 121880796 121880796 T - KDM2B Frame_Shift_Del p.K868Sfs*66 0.16 TCGA-5M-AAT6-01 12 122257681 122257681 G A SETD1B Missense_Mutation p.D1221N 0.11 unknown(0) TCGA-5M-AAT6-01 12 122359505 122359505 A G WDR66 Silent p.V98V 0.14 TCGA-5M-AAT6-01 12 122801318 122801318 T - CLIP1 Frame_Shift_Del p.M1151Wfs*8 0.14 TCGA-5M-AAT6-01 12 123082389 123082389 G A KNTC1 Silent p.R1489R 0.14 TCGA-5M-AAT6-01 12 123265709 123265709 A G CCDC62 Splice_Site p.X77_splice 0.05 TCGA-5M-AAT6-01 12 123334438 123334438 G A HIP1R Missense_Mutation p.R125H 0.09 tolerated(0.08) probably_damaging(0.939) TCGA-5M-AAT6-01 12 123444663 123444663 G A ABCB9 Silent p.H40H 0.13 TCGA-5M-AAT6-01 12 123793894 123793894 A G SBNO1 Missense_Mutation p.L1198P 0.15 tolerated(0.18) benign(0.139) TCGA-5M-AAT6-01 12 124239081 124239081 G A ATP6V0A2 Missense_Mutation p.A764T 0.22 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 12 124274577 124274577 C - DNAH10 Frame_Shift_Del p.M516Wfs*4 0.09 TCGA-5M-AAT6-01 12 124422111 124422111 C T CCDC92 Missense_Mutation p.A164T 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-5M-AAT6-01 12 124829480 124829480 G A NCOR2 Silent p.Y1459Y 0.32 TCGA-5M-AAT6-01 12 125441648 125441648 C T DHX37 Missense_Mutation p.V731M 0.15 tolerated(0.27) benign(0.011) TCGA-5M-AAT6-01 12 130648278 130648278 T C FZD10 Missense_Mutation p.I264T 0.20 deleterious(0) possibly_damaging(0.474) TCGA-5M-AAT6-01 12 130649275 130649275 A G FZD10 3'UTR 0.12 TCGA-5M-AAT6-01 12 130827608 130827608 G A PIWIL1 Missense_Mutation p.R51Q 0.13 tolerated(0.35) possibly_damaging(0.626) TCGA-5M-AAT6-01 12 130851689 130851689 C T PIWIL1 Missense_Mutation p.T736M 0.12 deleterious(0) probably_damaging(0.912) TCGA-5M-AAT6-01 12 131357144 131357144 T C RAN Silent p.A2A 0.15 TCGA-5M-AAT6-01 12 132262742 132262742 A - SFSWAP Frame_Shift_Del p.K760Sfs*63 0.12 TCGA-5M-AAT6-01 12 132393459 132393459 G A ULK1 Silent p.A169A 0.11 TCGA-5M-AAT6-01 12 132414291 132414291 G A PUS1 Silent p.L8L 0.12 TCGA-5M-AAT6-01 12 13243612 13243612 G A GSG1 Silent p.C63C 0.13 TCGA-5M-AAT6-01 12 132539726 132539726 G A EP400 Silent p.A2619A 0.15 TCGA-5M-AAT6-01 12 132905784 132905784 C T RP13-895J2.7 5'Flank 0.13 TCGA-5M-AAT6-01 12 133225959 133225959 G A POLE Missense_Mutation p.T1313M 0.21 deleterious(0.05) benign(0.017) TCGA-5M-AAT6-01 12 133424680 133424680 G A CHFR Silent p.D558D 0.17 TCGA-5M-AAT6-01 12 133727717 133727717 A G CTD-2140B24.4 Missense_Mutation p.N46S 0.08 deleterious(0) benign(0.018) TCGA-5M-AAT6-01 12 18641389 18641389 A - PIK3C2G Frame_Shift_Del p.N798Mfs*16 0.10 TCGA-5M-AAT6-01 12 19522684 19522684 C T PLEKHA5 Missense_Mutation p.P1271L 0.18 deleterious(0) possibly_damaging(0.716) TCGA-5M-AAT6-01 12 21015351 21015351 G A SLCO1B3 Missense_Mutation p.V163I 0.15 tolerated(0.05) benign(0.063) TCGA-5M-AAT6-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.13 deleterious(0) benign(0.361) TCGA-5M-AAT6-01 12 27069026 27069026 A - ASUN Frame_Shift_Del p.L386Cfs*11 0.13 TCGA-5M-AAT6-01 12 27829441 27829441 C T PPFIBP1 Silent p.N514N 0.10 TCGA-5M-AAT6-01 12 29625980 29625980 C T OVCH1 Missense_Mutation p.V553I 0.16 tolerated(0.4) benign(0.001) TCGA-5M-AAT6-01 12 31135581 31135581 C T TSPAN11 Missense_Mutation p.R191C 0.17 tolerated(0.2) possibly_damaging(0.69) TCGA-5M-AAT6-01 12 31944678 31944678 A - H3F3C 3'UTR 0.15 TCGA-5M-AAT6-01 12 31944962 31944962 C A H3F3C Missense_Mutation p.A47S 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.659) TCGA-5M-AAT6-01 12 32729295 32729295 G T FGD4 Nonsense_Mutation p.E2* 0.15 TCGA-5M-AAT6-01 12 32735516 32735516 A G FGD4 Intron 0.19 TCGA-5M-AAT6-01 12 3387705 3387705 G A TSPAN9 Missense_Mutation p.G61D 0.21 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 12 45810659 45810659 G T ANO6 Missense_Mutation p.G751V 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-5M-AAT6-01 12 464333 464334 AG - KDM5A Frame_Shift_Del p.S287Cfs*2 0.16 TCGA-5M-AAT6-01 12 47178946 47178946 G A SLC38A4 Missense_Mutation p.A114V 0.14 tolerated(0.2) benign(0.008) TCGA-5M-AAT6-01 12 4737053 4737053 T C AKAP3 Missense_Mutation p.R339G 0.11 deleterious(0) benign(0.124) TCGA-5M-AAT6-01 12 48258907 48258907 C T VDR Missense_Mutation p.R117H 0.19 tolerated(0.09) benign(0.008) TCGA-5M-AAT6-01 12 49176996 49176996 G A ADCY6 Silent p.G74G 0.16 TCGA-5M-AAT6-01 12 49221673 49221673 T C CACNB3 Silent p.D482D 0.12 TCGA-5M-AAT6-01 12 49420871 49420871 G A KMT2D Nonsense_Mutation p.R4960* 0.13 TCGA-5M-AAT6-01 12 49427679 49427679 C T KMT2D Silent p.Q3603Q 0.09 TCGA-5M-AAT6-01 12 49439933 49439933 G A KMT2D Silent p.S1536S 0.23 TCGA-5M-AAT6-01 12 49444932 49444933 - G KMT2D Frame_Shift_Ins p.R845Pfs*3 0.10 TCGA-5M-AAT6-01 12 49942820 49942820 C T KCNH3 Silent p.G444G 0.14 TCGA-5M-AAT6-01 12 50036816 50036816 A G FMNL3 3'UTR 0.15 TCGA-5M-AAT6-01 12 5025707 5025707 T C KCNA1 3'UTR 0.13 TCGA-5M-AAT6-01 12 50490675 50490675 C T SMARCD1 Missense_Mutation p.R438W 0.15 deleterious(0) probably_damaging(0.992) TCGA-5M-AAT6-01 12 51092127 51092127 G T DIP2B Missense_Mutation p.A689S 0.14 tolerated(0.36) benign(0.159) TCGA-5M-AAT6-01 12 51138374 51138374 G A DIP2B Missense_Mutation p.V1495M 0.15 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 12 51213523 51213523 A - ATF1 Frame_Shift_Del p.T261Lfs*2 0.12 TCGA-5M-AAT6-01 12 51882596 51882596 T C SLC4A8 Silent p.D800D 0.17 TCGA-5M-AAT6-01 12 52162652 52162652 C T SCN8A Silent p.L969L 0.17 TCGA-5M-AAT6-01 12 52682162 52682162 T C KRT81 Missense_Mutation p.R240G 0.10 deleterious(0.01) benign(0.182) TCGA-5M-AAT6-01 12 52710675 52710675 G A KRT83 Missense_Mutation p.R295W 0.15 deleterious(0.04) benign(0.365) TCGA-5M-AAT6-01 12 52756759 52756759 T G KRT85 Missense_Mutation p.E319A 0.12 deleterious(0) probably_damaging(0.987) TCGA-5M-AAT6-01 12 52761072 52761072 G A KRT85 Nonsense_Mutation p.R40* 0.17 TCGA-5M-AAT6-01 12 52864393 52864393 C T KRT6C Missense_Mutation p.A367T 0.12 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 12 52965235 52965235 C T KRT74 Missense_Mutation p.A251T 0.11 deleterious(0.04) benign(0.02) TCGA-5M-AAT6-01 12 52966343 52966343 A T KRT74 Missense_Mutation p.Y194N 0.14 deleterious(0) possibly_damaging(0.772) TCGA-5M-AAT6-01 12 53086256 53086256 A G KRT77 Missense_Mutation p.L459P 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 12 53452998 53452998 G A TENC1 Missense_Mutation p.A535T 0.16 tolerated(0.63) benign(0.028) TCGA-5M-AAT6-01 12 53647903 53647903 C T MFSD5 Silent p.T535T 0.11 TCGA-5M-AAT6-01 12 53880887 53880887 A C MAP3K12 Missense_Mutation p.S97A 0.15 tolerated(0.12) benign(0.004) TCGA-5M-AAT6-01 12 54105716 54105716 G A CALCOCO1 3'UTR 0.14 TCGA-5M-AAT6-01 12 55360173 55360173 T C TESPA1 Missense_Mutation p.R116G 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-5M-AAT6-01 12 55846838 55846838 C T OR6C2 Missense_Mutation p.P281S 0.14 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-5M-AAT6-01 12 5603660 5603660 C T NTF3 Nonsense_Mutation p.R107* 0.12 TCGA-5M-AAT6-01 12 56122152 56122152 G T CD63 Intron 0.11 TCGA-5M-AAT6-01 12 56214217 56214217 G T ORMDL2 3'UTR 0.09 TCGA-5M-AAT6-01 12 56428966 56428966 A G IKZF4 Missense_Mutation p.I537V 0.09 tolerated(1) benign(0.003) TCGA-5M-AAT6-01 12 56522235 56522235 C T ESYT1 Silent p.G44G 0.18 TCGA-5M-AAT6-01 12 56631576 56631576 G A SLC39A5 3'UTR 0.16 TCGA-5M-AAT6-01 12 57178801 57178801 G A HSD17B6 Splice_Site p.X246_splice 0.13 TCGA-5M-AAT6-01 12 57396902 57396902 A G ZBTB39 Silent p.P600P 0.06 TCGA-5M-AAT6-01 12 57424071 57424071 C T MYO1A Silent p.P838P 0.14 TCGA-5M-AAT6-01 12 57436899 57436899 C T MYO1A Missense_Mutation p.R352H 0.16 deleterious(0.02) probably_damaging(0.96) TCGA-5M-AAT6-01 12 57486316 57486316 G A NAB2 Missense_Mutation p.R348H 0.12 deleterious(0) probably_damaging(0.995) TCGA-5M-AAT6-01 12 57584777 57584777 C T LRP1 Silent p.D2407D 0.14 TCGA-5M-AAT6-01 12 57869556 57869556 T C ARHGAP9 Intron 0.12 TCGA-5M-AAT6-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.21 TCGA-5M-AAT6-01 12 57992845 57992845 T C PIP4K2C Intron 0.17 TCGA-5M-AAT6-01 12 58156967 58156967 C T CYP27B1 Silent p.L495L 0.13 TCGA-5M-AAT6-01 12 62946704 62946704 A - MON2 Frame_Shift_Del p.E989Nfs*2 0.13 TCGA-5M-AAT6-01 12 64017880 64017880 C T DPY19L2 Missense_Mutation p.R298H 0.11 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 12 6438579 6438579 G A TNFRSF1A Missense_Mutation p.R423C 0.17 tolerated(0.15) benign(0.091) TCGA-5M-AAT6-01 12 6495297 6495297 T C LTBR Missense_Mutation p.S180P 0.11 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 12 6839847 6839847 A - COPS7A Frame_Shift_Del p.T219Pfs*21 0.12 TCGA-5M-AAT6-01 12 6939693 6939693 G - LEPREL2 Frame_Shift_Del p.G277Afs*42 0.12 TCGA-5M-AAT6-01 12 69968091 69968091 C T FRS2 Nonsense_Mutation p.R295* 0.19 TCGA-5M-AAT6-01 12 70003802 70003802 G A LRRC10 Missense_Mutation p.P273S 0.12 tolerated_low_confidence(0.22) benign(0.001) TCGA-5M-AAT6-01 12 7084467 7084467 T G EMG1 Missense_Mutation p.V182G 0.12 deleterious(0) TCGA-5M-AAT6-01 12 72025969 72025969 A - ZFC3H1 Frame_Shift_Del p.L1048* 0.15 TCGA-5M-AAT6-01 12 72666679 72666679 G A TRHDE Missense_Mutation p.V41M 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-5M-AAT6-01 12 7527193 7527193 G A CD163L1 Missense_Mutation p.A1085V 0.17 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 12 7843060 7843060 C T GDF3 Missense_Mutation p.R170Q 0.14 tolerated(1) benign(0.001) TCGA-5M-AAT6-01 12 7984228 7984228 C T SLC2A14 Missense_Mutation p.V105I 0.17 tolerated(0.36) benign(0.299) TCGA-5M-AAT6-01 12 86373626 86373626 C T MGAT4C Missense_Mutation p.R293H 0.08 tolerated(0.17) possibly_damaging(0.749) TCGA-5M-AAT6-01 12 8759511 8759511 G A AICDA Missense_Mutation p.R36C 0.08 tolerated(0.18) probably_damaging(0.984) TCGA-5M-AAT6-01 12 88588949 88588949 A - TMTC3 Frame_Shift_Del p.K758Nfs*31 0.14 TCGA-5M-AAT6-01 12 9074237 9074237 G A PHC1 Missense_Mutation p.R116Q 0.12 deleterious(0.01) probably_damaging(0.946) TCGA-5M-AAT6-01 12 94543337 94543337 C T PLXNC1 Missense_Mutation p.A197V 0.15 tolerated(0.23) benign(0.313) TCGA-5M-AAT6-01 12 94658889 94658889 C T PLXNC1 Missense_Mutation p.T1162M 0.13 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 12 94975611 94975611 G A TMCC3 Missense_Mutation p.T261M 0.08 deleterious(0) probably_damaging(0.937) TCGA-5M-AAT6-01 12 95443008 95443008 C T NR2C1 Missense_Mutation p.A323T 0.10 deleterious(0.04) probably_damaging(0.995) TCGA-5M-AAT6-01 12 95501385 95501385 A G FGD6 Missense_Mutation p.L1096P 0.11 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 12 96640998 96640998 C T ELK3 Missense_Mutation p.T163M 0.13 tolerated(0.27) possibly_damaging(0.904) TCGA-5M-AAT6-01 12 99020374 99020374 C T IKBIP Silent p.T156T 0.14 TCGA-5M-AAT6-01 12 99201692 99201692 G A ANKS1B Intron 0.10 TCGA-5M-AAT6-01 13 100909900 100909900 G A PCCA Missense_Mutation p.R230H 0.15 deleterious(0) possibly_damaging(0.851) TCGA-5M-AAT6-01 13 101316507 101316507 C T TMTC4 Silent p.K101K 0.17 TCGA-5M-AAT6-01 13 103385767 103385767 G A CCDC168 Silent p.Y1131Y 0.15 TCGA-5M-AAT6-01 13 108860867 108860867 T C LIG4 3'UTR 0.07 TCGA-5M-AAT6-01 13 108862231 108862232 - A LIG4 Frame_Shift_Ins p.L462Ffs*12 0.10 TCGA-5M-AAT6-01 13 108863111 108863111 T - LIG4 Frame_Shift_Del p.K169Rfs*7 0.09 TCGA-5M-AAT6-01 13 108922424 108922424 C A TNFSF13B Missense_Mutation p.L61I 0.23 deleterious(0.04) probably_damaging(0.991) TCGA-5M-AAT6-01 13 109792811 109792811 G A MYO16 Silent p.A1395A 0.17 TCGA-5M-AAT6-01 13 110434991 110434991 C T IRS2 Missense_Mutation p.R1137H 0.15 deleterious(0) probably_damaging(0.984) TCGA-5M-AAT6-01 13 110802598 110802598 G A COL4A1 3'UTR 0.11 TCGA-5M-AAT6-01 13 111125481 111125481 C - COL4A2 Frame_Shift_Del p.P805Lfs*15 0.15 TCGA-5M-AAT6-01 13 111371811 111371811 C T ING1 Silent p.G267G 0.11 TCGA-5M-AAT6-01 13 112723867 112723867 A T SOX1 3'UTR 0.14 TCGA-5M-AAT6-01 13 113088832 113088832 G T SPACA7 Missense_Mutation p.S186I 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.883) TCGA-5M-AAT6-01 13 113439518 113439518 G A ATP11A Missense_Mutation p.A37T 0.11 tolerated(0.99) benign(0) TCGA-5M-AAT6-01 13 113741624 113741624 A G MCF2L Missense_Mutation p.T817A 0.08 tolerated(0.49) benign(0) TCGA-5M-AAT6-01 13 113826252 113826252 G A PROZ Missense_Mutation p.V368M 0.28 tolerated(0.12) benign(0.004) TCGA-5M-AAT6-01 13 114188460 114188460 A G TMCO3 Missense_Mutation p.I482V 0.04 tolerated(0.53) benign(0.004) TCGA-5M-AAT6-01 13 114498186 114498186 C T TMEM255B Silent p.D106D 0.08 TCGA-5M-AAT6-01 13 114748747 114748747 T C RASA3 3'UTR 0.06 TCGA-5M-AAT6-01 13 19752394 19752394 G A TUBA3C Missense_Mutation p.R123C 0.10 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-5M-AAT6-01 13 20242596 20242596 G A MPHOSPH8 Missense_Mutation p.A752T 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-5M-AAT6-01 13 20717214 20717214 T C GJA3 Missense_Mutation p.I72V 0.06 deleterious(0.04) possibly_damaging(0.679) TCGA-5M-AAT6-01 13 22275632 22275632 C T FGF9 3'UTR 0.10 TCGA-5M-AAT6-01 13 23908410 23908410 T A SACS Missense_Mutation p.N3202I 0.16 benign(0.046) TCGA-5M-AAT6-01 13 23911843 23911843 A - SACS Frame_Shift_Del p.S2058Lfs*19 0.10 TCGA-5M-AAT6-01 13 24413786 24413786 A G MIPEP Splice_Site p.X446_splice 0.13 TCGA-5M-AAT6-01 13 24466193 24466193 A G C1QTNF9B Silent p.D79D 0.07 TCGA-5M-AAT6-01 13 24797168 24797168 C T SPATA13 Missense_Mutation p.S34L 0.29 tolerated_low_confidence(0.13) benign(0.021) TCGA-5M-AAT6-01 13 25435490 25435490 T - RNF17 Frame_Shift_Del p.C1288Vfs*21 0.09 TCGA-5M-AAT6-01 13 25905691 25905691 C T NUPL1 Missense_Mutation p.A477V 0.13 deleterious(0.01) possibly_damaging(0.853) TCGA-5M-AAT6-01 13 27259840 27259840 A G WASF3 Missense_Mutation p.K456R 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-5M-AAT6-01 13 29286834 29286834 G A SLC46A3 Missense_Mutation p.T348I 0.10 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 13 29287371 29287371 A G SLC46A3 Missense_Mutation p.I169T 0.13 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 13 32818321 32818321 T C FRY Splice_Site p.X2276_splice 0.08 TCGA-5M-AAT6-01 13 32890638 32890638 T - BRCA2 Frame_Shift_Del p.F15Lfs*10 0.08 TCGA-5M-AAT6-01 13 33703737 33703737 G A STARD13 Silent p.R359R 0.12 TCGA-5M-AAT6-01 13 35745571 35745571 C T NBEA Nonsense_Mutation p.R1469* 0.08 TCGA-5M-AAT6-01 13 36049383 36049383 T C MAB21L1 Missense_Mutation p.D298G 0.09 deleterious(0) probably_damaging(0.948) TCGA-5M-AAT6-01 13 36348594 36348594 C G DCLK1 3'UTR 0.15 TCGA-5M-AAT6-01 13 37586402 37586402 C T SUPT20H Silent p.Q675Q 0.07 TCGA-5M-AAT6-01 13 38210974 38210974 T - TRPC4 3'UTR 0.14 TCGA-5M-AAT6-01 13 38211612 38211612 T C TRPC4 Missense_Mutation p.K793E 0.09 tolerated(0.23) benign(0.281) TCGA-5M-AAT6-01 13 39597262 39597262 A C PROSER1 Silent p.P190P 0.22 TCGA-5M-AAT6-01 13 40175146 40175146 G A LHFP Missense_Mutation p.R70C 0.09 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 13 40293942 40293942 G A COG6 Missense_Mutation p.R521H 0.17 deleterious(0.03) benign(0.363) TCGA-5M-AAT6-01 13 41932806 41932806 T C NAA16 Intron 0.10 TCGA-5M-AAT6-01 13 45602096 45602096 A G GPALPP1 Silent p.L327L 0.14 TCGA-5M-AAT6-01 13 45602147 45602147 A G GPALPP1 Intron 0.15 TCGA-5M-AAT6-01 13 45965389 45965389 G A SLC25A30 3'Flank 0.13 TCGA-5M-AAT6-01 13 46287830 46287830 G A SPERT Missense_Mutation p.A224T 0.25 tolerated(0.48) benign(0.032) TCGA-5M-AAT6-01 13 46357673 46357673 G - SIAH3 Frame_Shift_Del p.R219Gfs*10 0.12 TCGA-5M-AAT6-01 13 49765500 49765500 C T FNDC3A Missense_Mutation p.R736C 0.09 deleterious(0) benign(0.03) TCGA-5M-AAT6-01 13 50206620 50206620 C T ARL11 3'UTR 0.10 TCGA-5M-AAT6-01 13 50590095 50590095 T - KCNRG Frame_Shift_Del p.F157Sfs*5 0.10 TCGA-5M-AAT6-01 13 51948407 51948408 - T INTS6 Frame_Shift_Ins p.G681Rfs*15 0.16 TCGA-5M-AAT6-01 13 52334078 52334078 G A WDFY2 3'UTR 0.10 TCGA-5M-AAT6-01 13 52343178 52343178 C - DHRS12 Intron 0.16 TCGA-5M-AAT6-01 13 52707324 52707324 G A NEK3 Missense_Mutation p.S475L 0.10 deleterious(0.01) benign(0.102) TCGA-5M-AAT6-01 13 52972235 52972235 A G THSD1 Silent p.G51G 0.14 TCGA-5M-AAT6-01 13 53024637 53024639 CTC - VPS36 In_Frame_Del p.E31del 0.24 TCGA-5M-AAT6-01 13 53421689 53421689 G A PCDH8 Missense_Mutation p.R295C 0.08 deleterious(0.01) possibly_damaging(0.645) TCGA-5M-AAT6-01 13 58206795 58206795 G A PCDH17 Missense_Mutation p.G39S 0.25 deleterious(0.02) benign(0.055) TCGA-5M-AAT6-01 13 58208638 58208638 A C PCDH17 Missense_Mutation p.E653A 0.12 tolerated(0.09) benign(0.305) TCGA-5M-AAT6-01 13 58208755 58208755 T C PCDH17 Missense_Mutation p.V692A 0.11 tolerated(0.76) benign(0.017) TCGA-5M-AAT6-01 13 60384943 60384943 G A DIAPH3 Missense_Mutation p.R1048C 0.21 deleterious(0.03) benign(0.006) TCGA-5M-AAT6-01 13 67800011 67800011 G A PCDH9 Silent p.A854A 0.09 TCGA-5M-AAT6-01 13 67801570 67801570 C A PCDH9 Missense_Mutation p.G335C 0.09 deleterious(0.01) probably_damaging(1) TCGA-5M-AAT6-01 13 73335658 73335658 A G DIS3 Missense_Mutation p.L838S 0.04 deleterious(0.01) probably_damaging(0.91) TCGA-5M-AAT6-01 13 75936622 75936622 C T TBC1D4 Missense_Mutation p.C207Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 13 75936660 75936660 G A TBC1D4 Silent p.D194D 0.09 TCGA-5M-AAT6-01 13 76381957 76381957 A - LMO7 Frame_Shift_Del p.D282Mfs*3 0.12 TCGA-5M-AAT6-01 13 76382323 76382323 T G LMO7 Missense_Mutation p.L402R 0.10 tolerated(0.66) probably_damaging(0.943) TCGA-5M-AAT6-01 13 77619411 77619411 A - MYCBP2 3'UTR 0.23 TCGA-5M-AAT6-01 13 77853023 77853023 T A MYCBP2 Missense_Mutation p.E168D 0.13 benign(0.046) TCGA-5M-AAT6-01 13 80911462 80911462 T C SPRY2 Missense_Mutation p.S127G 0.10 tolerated(0.31) probably_damaging(0.952) TCGA-5M-AAT6-01 13 88328741 88328742 - A SLITRK5 Frame_Shift_Ins p.S368Ifs*19 0.15 TCGA-5M-AAT6-01 13 96505845 96505845 C G UGGT2 Missense_Mutation p.Q1412H 0.11 deleterious(0) possibly_damaging(0.844) TCGA-5M-AAT6-01 13 97484970 97484970 C T HS6ST3 Missense_Mutation p.R312C 0.10 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 13 99515322 99515322 T A DOCK9 Missense_Mutation p.Q1177L 0.15 tolerated(0.59) benign(0.062) TCGA-5M-AAT6-01 13 99853549 99853549 G A UBAC2 Intron 0.37 TCGA-5M-AAT6-01 14 100193077 100193077 G A CYP46A1 3'UTR 0.10 TCGA-5M-AAT6-01 14 100604221 100604221 C T EVL Intron 0.11 TCGA-5M-AAT6-01 14 100706056 100706056 A G YY1 Missense_Mutation p.S159G 0.16 tolerated(0.08) benign(0.011) TCGA-5M-AAT6-01 14 101348162 101348162 G A RTL1 Silent p.D988D 0.16 TCGA-5M-AAT6-01 14 101531792 101531792 C T MIR412 RNA 0.14 TCGA-5M-AAT6-01 14 102455043 102455043 G A DYNC1H1 Missense_Mutation p.E908K 0.14 benign(0.222) TCGA-5M-AAT6-01 14 102483478 102483478 T - DYNC1H1 Frame_Shift_Del p.F2635Lfs*67 0.12 TCGA-5M-AAT6-01 14 102496168 102496168 C T DYNC1H1 Missense_Mutation p.R3219C 0.19 probably_damaging(0.977) TCGA-5M-AAT6-01 14 102509082 102509082 C T DYNC1H1 Silent p.C4170C 0.11 TCGA-5M-AAT6-01 14 102906910 102906910 A G TECPR2 Missense_Mutation p.I906V 0.07 tolerated(0.21) benign(0.011) TCGA-5M-AAT6-01 14 103568591 103568591 G A EXOC3L4 Silent p.R177R 0.11 TCGA-5M-AAT6-01 14 105209473 105209473 G A ADSSL1 Missense_Mutation p.G383S 0.12 deleterious(0) probably_damaging(0.968) TCGA-5M-AAT6-01 14 105242997 105242997 G A AKT1 Missense_Mutation p.R96W 0.17 deleterious(0.02) benign(0.052) TCGA-5M-AAT6-01 14 105353223 105353223 C - CEP170B Frame_Shift_Del p.H885Tfs*28 0.12 TCGA-5M-AAT6-01 14 105412637 105412637 C T AHNAK2 Missense_Mutation p.V3051I 0.08 benign(0.116) TCGA-5M-AAT6-01 14 105614481 105614481 G - JAG2 Frame_Shift_Del p.G741Afs*21 0.11 TCGA-5M-AAT6-01 14 105849727 105849727 G A PACS2 Missense_Mutation p.V553M 0.24 tolerated(0.08) possibly_damaging(0.884) TCGA-5M-AAT6-01 14 105932770 105932770 C - MTA1 Frame_Shift_Del p.R546Afs*8 0.14 TCGA-5M-AAT6-01 14 106170733 106170733 G - IGHA1 3'Flank 0.16 TCGA-5M-AAT6-01 14 106845443 106845443 C T IGHV3-35 Silent p.T77T 0.17 TCGA-5M-AAT6-01 14 21559056 21559056 G A ZNF219 Missense_Mutation p.P603L 0.16 tolerated(0.16) benign(0.002) TCGA-5M-AAT6-01 14 21861360 21861360 T C CHD8 Missense_Mutation p.M2125V 0.16 tolerated(0.13) benign(0.019) TCGA-5M-AAT6-01 14 21871357 21871357 C T CHD8 Missense_Mutation p.R1178H 0.14 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 14 21896205 21896205 C T CHD8 Missense_Mutation p.R475H 0.16 deleterious(0) probably_damaging(0.98) TCGA-5M-AAT6-01 14 23568920 23568920 C T C14orf119 3'UTR 0.11 TCGA-5M-AAT6-01 14 23816929 23816929 T C SLC22A17 Missense_Mutation p.H319R 0.13 tolerated(0.09) probably_damaging(0.994) TCGA-5M-AAT6-01 14 23858101 23858101 G A MYH6 Missense_Mutation p.A1381V 0.19 deleterious(0.02) probably_damaging(0.965) TCGA-5M-AAT6-01 14 24109044 24109044 C T DHRS2 Silent p.S120S 0.13 TCGA-5M-AAT6-01 14 24587624 24587624 G A DCAF11 Missense_Mutation p.R202Q 0.15 tolerated(0.55) benign(0.126) TCGA-5M-AAT6-01 14 24617679 24617679 T C RNF31 Intron 0.21 TCGA-5M-AAT6-01 14 24629825 24629825 T C RNF31 3'UTR 0.16 TCGA-5M-AAT6-01 14 24655169 24655169 A G IPO4 Missense_Mutation p.M356T 0.07 deleterious(0.01) benign(0.017) TCGA-5M-AAT6-01 14 24773705 24773705 T C NOP9 Missense_Mutation p.Y552H 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-5M-AAT6-01 14 24877341 24877341 G A NYNRIN Nonsense_Mutation p.W155* 0.14 TCGA-5M-AAT6-01 14 24884568 24884568 G - NYNRIN Frame_Shift_Del p.G1206Vfs*50 0.09 TCGA-5M-AAT6-01 14 31354892 31354892 T C COCH Intron 0.18 TCGA-5M-AAT6-01 14 31404427 31404427 A G STRN3 Silent p.T310T 0.14 TCGA-5M-AAT6-01 14 31576265 31576265 A - HECTD1 Frame_Shift_Del p.F2271Lfs*13 0.13 TCGA-5M-AAT6-01 14 34269062 34269062 G A NPAS3 Missense_Mutation p.G517S 0.11 tolerated(0.28) probably_damaging(0.987) TCGA-5M-AAT6-01 14 36986242 36986242 T C NKX2-1 3'UTR 0.18 TCGA-5M-AAT6-01 14 45675337 45675337 T - MIS18BP1 Frame_Shift_Del p.K1063Nfs*18 0.11 TCGA-5M-AAT6-01 14 50074832 50074832 C A LRR1 Missense_Mutation p.H333N 0.12 tolerated(0.79) benign(0) TCGA-5M-AAT6-01 14 50118026 50118026 G A POLE2 Silent p.C427C 0.14 TCGA-5M-AAT6-01 14 51372029 51372029 T C PYGL 3'UTR 0.16 TCGA-5M-AAT6-01 14 52520942 52520942 C T NID2 Missense_Mutation p.A289T 0.12 tolerated(0.69) benign(0) TCGA-5M-AAT6-01 14 55819239 55819239 T C FBXO34 Missense_Mutation p.Y711H 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-5M-AAT6-01 14 57686117 57686118 - A EXOC5 Frame_Shift_Ins p.L483Ffs*15 0.15 TCGA-5M-AAT6-01 14 59806864 59806864 C T DAAM1 Missense_Mutation p.R691W 0.09 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 14 59930565 59930565 C A GPR135 Missense_Mutation p.W460C 0.15 deleterious(0) probably_damaging(0.969) TCGA-5M-AAT6-01 14 60212696 60212696 T - RTN1 Frame_Shift_Del p.I249Sfs*16 0.11 TCGA-5M-AAT6-01 14 60712693 60712694 GA - PPM1A Frame_Shift_Del p.R45Kfs*4 0.11 TCGA-5M-AAT6-01 14 64153081 64153081 G - SGPP1 Frame_Shift_Del p.I357Lfs*3 0.12 TCGA-5M-AAT6-01 14 68274293 68274293 C G ZFYVE26 Missense_Mutation p.L236F 0.16 deleterious(0.04) benign(0.011) TCGA-5M-AAT6-01 14 69345207 69345207 G A ACTN1 Missense_Mutation p.R799C 0.11 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-5M-AAT6-01 14 69819052 69819052 C T GALNT16 Intron 0.18 TCGA-5M-AAT6-01 14 70926261 70926261 T - ADAM21 Frame_Shift_Del p.L684Cfs*3 0.17 TCGA-5M-AAT6-01 14 73198593 73198593 C T DPF3 Silent p.T117T 0.19 TCGA-5M-AAT6-01 14 74185944 74185944 A G ELMSAN1 3'UTR 0.28 TCGA-5M-AAT6-01 14 74196470 74196470 C T ELMSAN1 Silent p.P656P 0.12 TCGA-5M-AAT6-01 14 74968253 74968253 G A LTBP2 Silent p.C1737C 0.19 TCGA-5M-AAT6-01 14 75182742 75182742 T - FCF1 Frame_Shift_Del p.S79Pfs*2 0.09 TCGA-5M-AAT6-01 14 75409433 75409433 G A PGF Silent p.C163C 0.09 TCGA-5M-AAT6-01 14 75537959 75537959 G A ZC2HC1C Missense_Mutation p.R228Q 0.12 tolerated(0.07) benign(0.397) TCGA-5M-AAT6-01 14 76105721 76105721 T C FLVCR2 Missense_Mutation p.M384T 0.15 deleterious(0) benign(0.21) TCGA-5M-AAT6-01 14 76186105 76186105 T C TTLL5 Silent p.Y290Y 0.14 TCGA-5M-AAT6-01 14 76549001 76549001 A G IFT43 Missense_Mutation p.N142S 0.15 tolerated(0.11) benign(0.259) TCGA-5M-AAT6-01 14 76549607 76549607 T C IFT43 Missense_Mutation p.L166P 0.14 deleterious(0) probably_damaging(0.962) TCGA-5M-AAT6-01 14 76948364 76948364 C T ESRRB Missense_Mutation p.R174C 0.10 deleterious(0) probably_damaging(0.991) TCGA-5M-AAT6-01 14 79181126 79181126 C T NRXN3 Missense_Mutation p.T190M 0.15 tolerated(0.12) probably_damaging(0.996) TCGA-5M-AAT6-01 14 86089366 86089366 C T FLRT2 Missense_Mutation p.A503V 0.20 tolerated(0.4) benign(0.004) TCGA-5M-AAT6-01 14 86092093 86092093 C T FLRT2 3'UTR 0.18 TCGA-5M-AAT6-01 14 90398949 90398949 T A EFCAB11 Missense_Mutation p.L80F 0.10 deleterious(0.05) benign(0.021) TCGA-5M-AAT6-01 14 93119289 93119289 C T RIN3 Missense_Mutation p.A632V 0.14 tolerated(0.06) benign(0.104) TCGA-5M-AAT6-01 14 94088889 94088889 G - UNC79 Frame_Shift_Del p.E1595Rfs*6 0.13 TCGA-5M-AAT6-01 14 94545567 94545567 G - DDX24 Frame_Shift_Del p.A177Rfs*34 0.11 TCGA-5M-AAT6-01 14 94754800 94754800 G T SERPINA10 Missense_Mutation p.A272E 0.11 tolerated(0.82) benign(0.008) TCGA-5M-AAT6-01 14 94955960 94955960 G A SERPINA12 Silent p.G350G 0.18 TCGA-5M-AAT6-01 14 95030078 95030078 G A SERPINA4 Missense_Mutation p.A87T 0.12 tolerated(0.05) benign(0.418) TCGA-5M-AAT6-01 14 95572117 95572117 A G DICER1 Silent p.L997L 0.12 TCGA-5M-AAT6-01 14 95572514 95572514 A G DICER1 Missense_Mutation p.Y951H 0.15 tolerated(0.48) possibly_damaging(0.703) TCGA-5M-AAT6-01 14 95577791 95577791 C T DICER1 Missense_Mutation p.E707K 0.13 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 14 95590610 95590610 A T DICER1 Missense_Mutation p.N433K 0.16 tolerated(0.15) benign(0.424) TCGA-5M-AAT6-01 14 95934153 95934153 G A SYNE3 Missense_Mutation p.T99I 0.23 tolerated(0.49) benign(0.134) TCGA-5M-AAT6-01 15 100185772 100185772 T G MEF2A Missense_Mutation p.F21V 0.05 deleterious(0) possibly_damaging(0.838) TCGA-5M-AAT6-01 15 100272030 100272030 C T LYSMD4 Silent p.A29A 0.10 TCGA-5M-AAT6-01 15 101009648 101009648 A G CERS3 Silent p.C260C 0.14 TCGA-5M-AAT6-01 15 101169830 101169830 C T ASB7 Missense_Mutation p.R134W 0.16 deleterious(0) probably_damaging(0.987) TCGA-5M-AAT6-01 15 101606898 101606898 G A LRRK1 Missense_Mutation p.R1941Q 0.15 tolerated(0.17) benign(0.041) TCGA-5M-AAT6-01 15 22368819 22368819 C T OR4M2 Missense_Mutation p.L82F 0.05 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 15 22867631 22867631 A G TUBGCP5 Missense_Mutation p.T903A 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-5M-AAT6-01 15 23931452 23931452 G A NDN Missense_Mutation p.R305W 0.17 deleterious(0) possibly_damaging(0.87) TCGA-5M-AAT6-01 15 25620879 25620879 G A UBE3A Missense_Mutation p.R35C 0.24 deleterious(0) probably_damaging(0.932) TCGA-5M-AAT6-01 15 27765251 27765251 G A GABRG3 Silent p.T282T 0.17 TCGA-5M-AAT6-01 15 28386628 28386628 G A HERC2 Nonsense_Mutation p.Q3989* 0.17 TCGA-5M-AAT6-01 15 28492014 28492014 G A HERC2 Silent p.L1089L 0.14 TCGA-5M-AAT6-01 15 34103212 34103212 C T RYR3 Missense_Mutation p.R3411W 0.14 possibly_damaging(0.582) TCGA-5M-AAT6-01 15 34356387 34356387 T A CHRM5 Missense_Mutation p.V490D 0.14 deleterious(0) probably_damaging(0.919) TCGA-5M-AAT6-01 15 34646689 34646689 G A NUTM1 Missense_Mutation p.R345H 0.11 tolerated(0.07) benign(0.159) TCGA-5M-AAT6-01 15 35045232 35045232 C - GJD2 Frame_Shift_Del p.G138Afs*13 0.18 TCGA-5M-AAT6-01 15 35256444 35256444 A - AQR Frame_Shift_Del p.F41Lfs*3 0.11 TCGA-5M-AAT6-01 15 35274148 35274152 AATTA - ZNF770 Frame_Shift_Del p.L495Sfs*10 0.15 TCGA-5M-AAT6-01 15 40398151 40398151 C T BMF Missense_Mutation p.R46Q 0.13 deleterious_low_confidence(0.01) benign(0.33) TCGA-5M-AAT6-01 15 40751762 40751762 C A BAHD1 Missense_Mutation p.L367M 0.10 deleterious(0.04) benign(0.352) TCGA-5M-AAT6-01 15 41099921 41099921 G T ZFYVE19 Missense_Mutation p.R45M 0.09 deleterious_low_confidence(0.05) benign(0.02) TCGA-5M-AAT6-01 15 41148097 41148097 C T SPINT1 Silent p.C391C 0.22 TCGA-5M-AAT6-01 15 41186935 41186935 G A VPS18 5'UTR 0.18 TCGA-5M-AAT6-01 15 41192287 41192287 C T VPS18 Missense_Mutation p.T424M 0.14 tolerated(0.12) benign(0.019) TCGA-5M-AAT6-01 15 41687167 41687167 G A NDUFAF1 Missense_Mutation p.R217W 0.24 deleterious(0.03) possibly_damaging(0.908) TCGA-5M-AAT6-01 15 42127262 42127262 C T JMJD7-PLA2G4B Missense_Mutation p.R105C 0.13 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-5M-AAT6-01 15 42734542 42734542 T C ZNF106 Silent p.R1141R 0.11 TCGA-5M-AAT6-01 15 42743362 42743362 G A ZNF106 Missense_Mutation p.R347C 0.10 tolerated(0.15) benign(0.004) TCGA-5M-AAT6-01 15 43501606 43501606 G A EPB42 Missense_Mutation p.T263I 0.15 tolerated(0.13) benign(0.059) TCGA-5M-AAT6-01 15 43545045 43545045 G A TGM5 Silent p.S258S 0.09 TCGA-5M-AAT6-01 15 43552684 43552684 C T TGM5 Missense_Mutation p.R35Q 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-5M-AAT6-01 15 43819040 43819040 G A MAP1A Missense_Mutation p.R1790H 0.16 benign(0.018) TCGA-5M-AAT6-01 15 44175946 44175946 C T FRMD5 Missense_Mutation p.V364I 0.22 tolerated(0.25) benign(0.058) TCGA-5M-AAT6-01 15 44876563 44876563 C T SPG11 Missense_Mutation p.R1772H 0.19 deleterious(0.05) benign(0.252) TCGA-5M-AAT6-01 15 44913987 44913987 A G SPG11 Missense_Mutation p.S864P 0.10 tolerated(0.2) benign(0.008) TCGA-5M-AAT6-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.15 TCGA-5M-AAT6-01 15 45007846 45007846 A - B2M Frame_Shift_Del p.Y98Lfs*5 0.08 TCGA-5M-AAT6-01 15 45389874 45389874 G A DUOX2 Missense_Mutation p.R1211C 0.08 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 15 48493930 48493930 T C CTXN2 3'UTR 0.11 TCGA-5M-AAT6-01 15 48704837 48704837 T C FBN1 Missense_Mutation p.K2719E 0.21 benign(0.416) TCGA-5M-AAT6-01 15 48787729 48787729 C A FBN1 Missense_Mutation p.G826C 0.20 probably_damaging(0.999) TCGA-5M-AAT6-01 15 49048607 49048607 A G CEP152 Silent p.P946P 0.16 TCGA-5M-AAT6-01 15 49716572 49716572 T C FGF7 Silent p.G26G 0.18 TCGA-5M-AAT6-01 15 50475089 50475089 G A SLC27A2 Silent p.L155L 0.11 TCGA-5M-AAT6-01 15 51778393 51778393 T C DMXL2 Missense_Mutation p.S1787G 0.11 tolerated(0.1) benign(0) TCGA-5M-AAT6-01 15 52689455 52689455 T C MYO5A Missense_Mutation p.Q421R 0.09 tolerated(0.21) benign(0.001) TCGA-5M-AAT6-01 15 52901933 52901933 C T FAM214A Missense_Mutation p.G393E 0.11 tolerated(0.11) benign(0.027) TCGA-5M-AAT6-01 15 52903852 52903852 C A FAM214A Missense_Mutation p.E108D 0.18 tolerated(0.44) benign(0.008) TCGA-5M-AAT6-01 15 52903853 52903853 T G FAM214A Missense_Mutation p.E108A 0.11 deleterious(0.02) benign(0.275) TCGA-5M-AAT6-01 15 56386541 56386541 G A RFX7 Missense_Mutation p.H1129Y 0.13 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-5M-AAT6-01 15 57731738 57731738 C T CGNL1 Missense_Mutation p.S514L 0.17 tolerated(0.29) benign(0.002) TCGA-5M-AAT6-01 15 59225817 59225817 A G SLTM 5'UTR 0.18 TCGA-5M-AAT6-01 15 59499581 59499581 C T LDHAL6B Missense_Mutation p.R148C 0.18 tolerated(0.11) benign(0.092) TCGA-5M-AAT6-01 15 59516915 59516915 G A MYO1E Silent p.D250D 0.12 TCGA-5M-AAT6-01 15 62256915 62256915 T - VPS13C Frame_Shift_Del p.N1066Ifs*25 0.12 TCGA-5M-AAT6-01 15 63125645 63125648 AAGA - TLN2 Intron 0.11 TCGA-5M-AAT6-01 15 63918255 63918255 G A HERC1 Missense_Mutation p.R4402W 0.08 probably_damaging(0.997) TCGA-5M-AAT6-01 15 63970177 63970179 CTC - HERC1 In_Frame_Del p.G2312del 0.16 TCGA-5M-AAT6-01 15 63981889 63981889 G A HERC1 Missense_Mutation p.R1983C 0.10 benign(0.002) TCGA-5M-AAT6-01 15 64218275 64218275 G - DAPK2 Frame_Shift_Del p.P226Lfs*17 0.17 TCGA-5M-AAT6-01 15 65369510 65369510 C T KBTBD13 Silent p.R119R 0.17 TCGA-5M-AAT6-01 15 65491141 65491141 G A CILP Missense_Mutation p.R495C 0.11 deleterious(0) possibly_damaging(0.77) TCGA-5M-AAT6-01 15 66820229 66820229 A - ZWILCH Frame_Shift_Del p.D319Tfs*7 0.12 TCGA-5M-AAT6-01 15 67073458 67073458 A G SMAD6 Missense_Mutation p.D359G 0.13 deleterious(0) probably_damaging(0.99) TCGA-5M-AAT6-01 15 67073673 67073673 C - SMAD6 Frame_Shift_Del p.G433Afs*106 0.15 TCGA-5M-AAT6-01 15 67477184 67477184 G A SMAD3 Missense_Mutation p.V331I 0.20 deleterious(0.01) benign(0.247) TCGA-5M-AAT6-01 15 68468845 68468845 C T PIAS1 Missense_Mutation p.A445V 0.16 tolerated(0.51) benign(0.006) TCGA-5M-AAT6-01 15 68486190 68486190 T C CALML4 3'UTR 0.17 TCGA-5M-AAT6-01 15 68500439 68500439 C A CLN6 3'UTR 0.17 TCGA-5M-AAT6-01 15 72582339 72582339 C T CELF6 Missense_Mutation p.G182R 0.17 deleterious(0.02) benign(0.318) TCGA-5M-AAT6-01 15 72638444 72638444 G A HEXA Intron 0.10 TCGA-5M-AAT6-01 15 74166098 74166098 C A TBC1D21 Silent p.A16A 0.16 TCGA-5M-AAT6-01 15 74468548 74468548 A G ISLR 3'UTR 0.13 TCGA-5M-AAT6-01 15 74468739 74468739 C A ISLR 3'UTR 0.09 TCGA-5M-AAT6-01 15 74622548 74622548 C T CCDC33 Missense_Mutation p.R437W 0.13 deleterious(0.01) probably_damaging(0.916) TCGA-5M-AAT6-01 15 74912358 74912358 G A CLK3 Missense_Mutation p.R202H 0.16 deleterious(0) probably_damaging(0.987) TCGA-5M-AAT6-01 15 75045595 75045595 C T CYP1A2 Nonsense_Mutation p.Q413* 0.11 TCGA-5M-AAT6-01 15 75586769 75586769 A G GOLGA6D Missense_Mutation p.T679A 0.19 tolerated(0.07) probably_damaging(0.997) TCGA-5M-AAT6-01 15 76161330 76161330 A G UBE2Q2 Silent p.E142E 0.15 TCGA-5M-AAT6-01 15 77020963 77020963 C T SCAPER Missense_Mutation p.R713H 0.07 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 15 77345122 77345122 A G TSPAN3 Silent p.A194A 0.12 TCGA-5M-AAT6-01 15 77906604 77906604 G A LINGO1 Missense_Mutation p.P549S 0.13 tolerated(0.11) benign(0.004) TCGA-5M-AAT6-01 15 77906746 77906746 G A LINGO1 Silent p.N501N 0.07 TCGA-5M-AAT6-01 15 78893877 78893877 C T CHRNA3 Silent p.P369P 0.15 TCGA-5M-AAT6-01 15 79749462 79749462 C T KIAA1024 Nonsense_Mutation p.R325* 0.11 TCGA-5M-AAT6-01 15 80215264 80215264 A G C15orf37 Missense_Mutation p.E50G 0.07 possibly_damaging(0.607) TCGA-5M-AAT6-01 15 81176580 81176580 G A KIAA1199 Missense_Mutation p.D228N 0.13 tolerated(0.31) benign(0.001) TCGA-5M-AAT6-01 15 83673489 83673490 AT - C15orf40 Intron 0.11 TCGA-5M-AAT6-01 15 85383984 85383984 G A ALPK3 Missense_Mutation p.A694T 0.12 deleterious_low_confidence(0) benign(0.05) TCGA-5M-AAT6-01 15 85411485 85411485 G A ALPK3 Missense_Mutation p.G1841D 0.20 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 15 86270683 86270683 G A AKAP13 Missense_Mutation p.R2363Q 0.08 deleterious(0.03) possibly_damaging(0.654) TCGA-5M-AAT6-01 15 89401285 89401285 C T ACAN Silent p.S1823S 0.18 TCGA-5M-AAT6-01 15 89424591 89424591 G A HAPLN3 Missense_Mutation p.R164W 0.21 deleterious(0) probably_damaging(0.973) TCGA-5M-AAT6-01 15 90767191 90767191 C A SEMA4B Missense_Mutation p.H389N 0.15 tolerated(0.34) benign(0.008) TCGA-5M-AAT6-01 15 90767205 90767206 - C SEMA4B Frame_Shift_Ins p.R395Pfs*76 0.10 TCGA-5M-AAT6-01 15 91769928 91769929 - A SV2B Frame_Shift_Ins p.G148Rfs*23 0.17 TCGA-5M-AAT6-01 15 96869478 96869478 C T NR2F2 5'Flank 0.14 TCGA-5M-AAT6-01 16 1034717 1034717 G A SOX8 Silent p.P224P 0.08 TCGA-5M-AAT6-01 16 10576252 10576252 C T ATF7IP2 3'UTR 0.13 TCGA-5M-AAT6-01 16 11009470 11009470 C T CIITA Missense_Mutation p.R978W 0.17 deleterious(0) possibly_damaging(0.586) TCGA-5M-AAT6-01 16 11051653 11051653 T - CLEC16A Frame_Shift_Del p.L33* 0.13 TCGA-5M-AAT6-01 16 11933826 11933826 C T RSL1D1 Missense_Mutation p.R291Q 0.22 tolerated(0.51) benign(0.002) TCGA-5M-AAT6-01 16 1266939 1266939 A G CACNA1H Missense_Mutation p.N1751S 0.09 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 16 1270496 1270496 C - CACNA1H Frame_Shift_Del p.C2191Afs*26 0.11 TCGA-5M-AAT6-01 16 1498403 1498403 A G CLCN7 Missense_Mutation p.S656P 0.07 tolerated(0.07) possibly_damaging(0.864) TCGA-5M-AAT6-01 16 1550589 1550589 C T TELO2 Silent p.G390G 0.18 TCGA-5M-AAT6-01 16 1816337 1816337 C T MAPK8IP3 Missense_Mutation p.R915W 0.11 deleterious(0) possibly_damaging(0.901) TCGA-5M-AAT6-01 16 19663353 19663353 G A C16orf62 Missense_Mutation p.R810H 0.08 deleterious(0.02) probably_damaging(0.992) TCGA-5M-AAT6-01 16 2018539 2018539 C T RNF151 Silent p.G117G 0.16 TCGA-5M-AAT6-01 16 20360454 20360454 T C UMOD Missense_Mutation p.T57A 0.15 tolerated(0.18) benign(0.036) TCGA-5M-AAT6-01 16 20787181 20787181 T G ACSM3 Missense_Mutation p.N80K 0.15 tolerated(0.24) benign(0.33) TCGA-5M-AAT6-01 16 20994175 20994175 C T DNAH3 Missense_Mutation p.R2576H 0.16 deleterious(0.01) possibly_damaging(0.449) TCGA-5M-AAT6-01 16 21211178 21211178 G T ZP2 Missense_Mutation p.N572K 0.21 tolerated(0.15) benign(0.135) TCGA-5M-AAT6-01 16 21279042 21279042 C T CRYM Missense_Mutation p.R169H 0.09 tolerated(0.15) benign(0.378) TCGA-5M-AAT6-01 16 2134450 2134450 G A TSC2 Silent p.R1409R 0.11 TCGA-5M-AAT6-01 16 2158272 2158272 G A PKD1 Missense_Mutation p.A2299V 0.14 probably_damaging(0.95) TCGA-5M-AAT6-01 16 2163221 2163221 T C PKD1 Missense_Mutation p.T976A 0.14 possibly_damaging(0.836) TCGA-5M-AAT6-01 16 2226308 2226308 C T TRAF7 Missense_Mutation p.R641C 0.18 deleterious(0) probably_damaging(0.933) TCGA-5M-AAT6-01 16 2279678 2279678 T C E4F1 Splice_Site p.X139_splice 0.21 TCGA-5M-AAT6-01 16 2288474 2288474 C A DNASE1L2 3'UTR 0.16 TCGA-5M-AAT6-01 16 23701308 23701308 G A PLK1 Missense_Mutation p.R579Q 0.16 deleterious(0.01) probably_damaging(0.975) TCGA-5M-AAT6-01 16 24358138 24358138 C T CACNG3 Nonsense_Mutation p.R99* 0.09 TCGA-5M-AAT6-01 16 27351557 27351557 T C IL4R Silent p.P11P 0.10 TCGA-5M-AAT6-01 16 2815679 2815679 G A SRRM2 Missense_Mutation p.R1717H 0.09 unknown(0) TCGA-5M-AAT6-01 16 28604580 28604580 A G SULT1A2 Missense_Mutation p.M196T 0.09 deleterious(0) probably_damaging(0.962) TCGA-5M-AAT6-01 16 28838216 28838216 C T ATXN2L Missense_Mutation p.S217L 0.12 deleterious(0.04) probably_damaging(0.985) TCGA-5M-AAT6-01 16 28854382 28854382 G A TUFM Nonsense_Mutation p.R428* 0.14 TCGA-5M-AAT6-01 16 29706001 29706001 G A QPRT Silent p.L10L 0.11 TCGA-5M-AAT6-01 16 29824990 29824990 A - PRRT2 Frame_Shift_Del p.K207Nfs*22 0.12 TCGA-5M-AAT6-01 16 29845167 29845167 C T MVP Silent p.F145F 0.14 TCGA-5M-AAT6-01 16 29937352 29937352 C T KCTD13 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) unknown(0) TCGA-5M-AAT6-01 16 29996727 29996727 C T TAOK2 Missense_Mutation p.A539V 0.22 tolerated(0.38) benign(0.032) TCGA-5M-AAT6-01 16 30080306 30080306 C A ALDOA Intron 0.08 TCGA-5M-AAT6-01 16 3025436 3025436 G A PKMYT1 Silent p.F252F 0.18 TCGA-5M-AAT6-01 16 30370137 30370137 G A TBC1D10B Silent p.G548G 0.11 TCGA-5M-AAT6-01 16 30376893 30376893 C T TBC1D10B Missense_Mutation p.V327M 0.17 deleterious(0) possibly_damaging(0.473) TCGA-5M-AAT6-01 16 30566738 30566738 C T ZNF764 Missense_Mutation p.R335H 0.19 tolerated(0.07) probably_damaging(0.996) TCGA-5M-AAT6-01 16 30596544 30596544 A G ZNF785 Missense_Mutation p.I78T 0.12 deleterious(0) possibly_damaging(0.507) TCGA-5M-AAT6-01 16 30783205 30783205 G A RNF40 Missense_Mutation p.V880M 0.05 tolerated(0.08) possibly_damaging(0.815) TCGA-5M-AAT6-01 16 30964615 30964615 T C ORAI3 Missense_Mutation p.L113P 0.11 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 16 31144689 31144689 G - PRSS8 Frame_Shift_Del p.Q42Kfs*64 0.11 TCGA-5M-AAT6-01 16 31896501 31896501 G A ZNF267 Silent p.P50P 0.11 TCGA-5M-AAT6-01 16 31926606 31926606 G A ZNF267 Missense_Mutation p.E346K 0.15 deleterious(0.02) benign(0.001) TCGA-5M-AAT6-01 16 325048 325048 A G RGS11 Silent p.H82H 0.09 TCGA-5M-AAT6-01 16 333204 333204 T C PDIA2 Missense_Mutation p.L12P 0.13 deleterious(0.01) possibly_damaging(0.902) TCGA-5M-AAT6-01 16 334742 334742 G A PDIA2 Missense_Mutation p.A164T 0.13 tolerated(0.08) benign(0.052) TCGA-5M-AAT6-01 16 3349594 3349594 G A TIGD7 Silent p.L341L 0.15 TCGA-5M-AAT6-01 16 3592260 3592260 G A NLRC3 Missense_Mutation p.S1059F 0.12 deleterious(0) possibly_damaging(0.474) TCGA-5M-AAT6-01 16 3713635 3713635 G A TRAP1 Intron 0.31 TCGA-5M-AAT6-01 16 3778420 3778420 G A CREBBP Nonsense_Mutation p.Q2210* 0.15 TCGA-5M-AAT6-01 16 3779090 3779090 C T CREBBP Silent p.T1986T 0.10 TCGA-5M-AAT6-01 16 3781380 3781380 T C CREBBP Missense_Mutation p.D1662G 0.14 unknown(0) TCGA-5M-AAT6-01 16 4455498 4455498 C T CORO7 Silent p.A186A 0.09 TCGA-5M-AAT6-01 16 4557946 4557946 C T HMOX2 Missense_Mutation p.P146L 0.12 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 16 47347682 47347682 G A ITFG1 Silent p.C285C 0.08 TCGA-5M-AAT6-01 16 48244902 48244902 C T ABCC11 Missense_Mutation p.S522N 0.11 tolerated(0.23) benign(0.005) TCGA-5M-AAT6-01 16 4933707 4933707 C T PPL Missense_Mutation p.R1650Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 16 4949350 4949350 C T PPL Silent p.S214S 0.17 TCGA-5M-AAT6-01 16 49559305 49559305 G A ZNF423 Silent p.G1226G 0.06 TCGA-5M-AAT6-01 16 50659480 50659480 G A NKD1 Missense_Mutation p.V151I 0.09 deleterious(0.05) probably_damaging(0.995) TCGA-5M-AAT6-01 16 5080442 5080442 G A NAGPA Silent p.H245H 0.13 TCGA-5M-AAT6-01 16 50825519 50825519 A - CYLD Frame_Shift_Del p.N722Mfs*13 0.15 TCGA-5M-AAT6-01 16 53319585 53319585 C T CHD9 Missense_Mutation p.S1682L 0.13 probably_damaging(0.917) TCGA-5M-AAT6-01 16 53488679 53488679 T C RBL2 Silent p.C368C 0.14 TCGA-5M-AAT6-01 16 56947359 56947359 G T SLC12A3 3'UTR 0.15 TCGA-5M-AAT6-01 16 57144574 57144574 T C CPNE2 Intron 0.09 TCGA-5M-AAT6-01 16 57921913 57921913 G A CNGB1 Missense_Mutation p.A1103V 0.13 tolerated(0.06) benign(0.028) TCGA-5M-AAT6-01 16 58032066 58032066 G A ZNF319 Missense_Mutation p.T35M 0.08 deleterious(0.03) benign(0.019) TCGA-5M-AAT6-01 16 58314074 58314074 C T PRSS54 3'UTR 0.08 TCGA-5M-AAT6-01 16 613542 613542 C A C16orf11 Missense_Mutation p.P83H 0.11 tolerated(0.36) benign(0.409) TCGA-5M-AAT6-01 16 624377 624377 C T PIGQ Silent p.G101G 0.10 TCGA-5M-AAT6-01 16 65016097 65016097 G T CDH11 Silent p.T369T 0.16 TCGA-5M-AAT6-01 16 66919412 66919412 C T PDP2 Silent p.L409L 0.16 TCGA-5M-AAT6-01 16 67214569 67214569 T C KIAA0895L Intron 0.17 TCGA-5M-AAT6-01 16 67270963 67270963 G A FHOD1 Missense_Mutation p.R350W 0.14 deleterious(0) probably_damaging(0.995) TCGA-5M-AAT6-01 16 67271667 67271667 C T FHOD1 Missense_Mutation p.R216H 0.17 deleterious(0) probably_damaging(0.988) TCGA-5M-AAT6-01 16 67320458 67320458 C T PLEKHG4 Silent p.C881C 0.14 TCGA-5M-AAT6-01 16 67679454 67679454 A G RLTPR Missense_Mutation p.R18G 0.18 deleterious(0.02) benign(0.021) TCGA-5M-AAT6-01 16 67762448 67762448 G - RANBP10 Intron 0.15 TCGA-5M-AAT6-01 16 67919978 67919978 C - NRN1L Frame_Shift_Del p.R107Vfs*55 0.10 TCGA-5M-AAT6-01 16 67942591 67942591 G A PSKH1 5'UTR 0.21 TCGA-5M-AAT6-01 16 67968765 67968765 A G PSMB10 Silent p.C215C 0.16 TCGA-5M-AAT6-01 16 67984594 67984595 AG - SLC12A4 Frame_Shift_Del p.F475Wfs*5 0.12 TCGA-5M-AAT6-01 16 68014167 68014167 C T DPEP3 Silent p.T64T 0.13 TCGA-5M-AAT6-01 16 68057461 68057461 T C DDX28 5'UTR 0.15 TCGA-5M-AAT6-01 16 69149001 69149001 A G HAS3 Silent p.T498T 0.17 TCGA-5M-AAT6-01 16 69402375 69402375 T G TERF2 Missense_Mutation p.K242T 0.21 deleterious(0.03) probably_damaging(0.975) TCGA-5M-AAT6-01 16 70501093 70501093 C T FUK Intron 0.17 TCGA-5M-AAT6-01 16 70509348 70509348 G A FUK Missense_Mutation p.G825S 0.20 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 16 70546218 70546218 C T COG4 Missense_Mutation p.R221H 0.19 deleterious(0) probably_damaging(0.925) TCGA-5M-AAT6-01 16 708245 708245 T C WDR90 Silent p.A889A 0.13 TCGA-5M-AAT6-01 16 70884449 70884449 C T HYDIN Missense_Mutation p.E4185K 0.10 possibly_damaging(0.81) TCGA-5M-AAT6-01 16 71061652 71061652 T C HYDIN Silent p.G965G 0.24 TCGA-5M-AAT6-01 16 71606569 71606569 C T TAT Missense_Mutation p.C144Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 16 71674691 71674691 G A MARVELD3 Missense_Mutation p.D332N 0.18 tolerated(0.07) probably_damaging(0.995) TCGA-5M-AAT6-01 16 72110438 72110438 A - HPR Frame_Shift_Del p.K170Sfs*4 0.15 TCGA-5M-AAT6-01 16 72992964 72992964 C T ZFHX3 Missense_Mutation p.G361R 0.16 probably_damaging(0.996) TCGA-5M-AAT6-01 16 731998 731998 C G JMJD8 3'UTR 0.19 TCGA-5M-AAT6-01 16 74386206 74386206 G A RP11-252A24.2 RNA 0.11 TCGA-5M-AAT6-01 16 74499666 74499666 A G GLG1 Missense_Mutation p.C859R 0.10 deleterious(0) probably_damaging(0.979) TCGA-5M-AAT6-01 16 74725334 74725334 A G MLKL Missense_Mutation p.I188T 0.15 tolerated(0.2) benign(0.002) TCGA-5M-AAT6-01 16 74907972 74907972 C T WDR59 3'UTR 0.33 TCGA-5M-AAT6-01 16 77317610 77317610 T - ADAMTS18 3'UTR 0.40 TCGA-5M-AAT6-01 16 77325203 77325203 T C ADAMTS18 Missense_Mutation p.Y1121C 0.17 tolerated(0.1) possibly_damaging(0.447) TCGA-5M-AAT6-01 16 79633799 79633799 T C MAF Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) unknown(0) TCGA-5M-AAT6-01 16 80838080 80838080 C T CDYL2 5'UTR 0.16 TCGA-5M-AAT6-01 16 82069191 82069191 T C HSD17B2 Silent p.P54P 0.09 TCGA-5M-AAT6-01 16 84227523 84227523 C A ADAD2 Intron 0.12 TCGA-5M-AAT6-01 16 84482210 84482210 C T ATP2C2 Silent p.N525N 0.15 TCGA-5M-AAT6-01 16 84651594 84651594 C T COTL1 5'UTR 0.21 TCGA-5M-AAT6-01 16 84691223 84691223 C T KLHL36 Silent p.A270A 0.17 TCGA-5M-AAT6-01 16 84691257 84691257 G A KLHL36 Missense_Mutation p.V282I 0.12 tolerated(0.28) benign(0.002) TCGA-5M-AAT6-01 16 87445478 87445478 G A ZCCHC14 Missense_Mutation p.P813L 0.10 tolerated(0.07) unknown(0) TCGA-5M-AAT6-01 16 88061192 88061192 C A BANP Silent p.G325G 0.12 TCGA-5M-AAT6-01 16 88599811 88599811 G T ZFPM1 Missense_Mutation p.G482V 0.08 tolerated(0.13) benign(0.115) TCGA-5M-AAT6-01 16 88666204 88666204 A - ZC3H18 Frame_Shift_Del p.A315Qfs*18 0.16 TCGA-5M-AAT6-01 16 88706334 88706334 C T IL17C Missense_Mutation p.R150W 0.08 deleterious(0.03) possibly_damaging(0.759) TCGA-5M-AAT6-01 16 88798281 88798281 C T PIEZO1 Missense_Mutation p.R1010H 0.12 deleterious(0.01) benign(0.099) TCGA-5M-AAT6-01 16 88801621 88801621 G A PIEZO1 Missense_Mutation p.R531C 0.18 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 16 88871042 88871042 T C CDT1 Silent p.G106G 0.14 TCGA-5M-AAT6-01 16 88872000 88872000 C A CDT1 Missense_Mutation p.P214H 0.22 deleterious(0) probably_damaging(0.948) TCGA-5M-AAT6-01 16 89347700 89347700 G A ANKRD11 Silent p.T1750T 0.17 TCGA-5M-AAT6-01 16 89349484 89349484 G A ANKRD11 Missense_Mutation p.R1156W 0.24 probably_damaging(0.977) TCGA-5M-AAT6-01 16 89592737 89592737 C T SPG7 Missense_Mutation p.R207W 0.13 deleterious(0.02) probably_damaging(0.953) TCGA-5M-AAT6-01 16 89611090 89611090 G A SPG7 Silent p.A453A 0.24 TCGA-5M-AAT6-01 16 89645337 89645337 G A CPNE7 Missense_Mutation p.A144T 0.20 tolerated(0.48) benign(0) TCGA-5M-AAT6-01 16 89789094 89789094 C T ZNF276 Missense_Mutation p.L121F 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-5M-AAT6-01 16 90032403 90032403 G A DEF8 3'UTR 0.10 TCGA-5M-AAT6-01 16 920871 920871 G A LMF1 Missense_Mutation p.R364W 0.12 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 17 1028580 1028580 C T ABR Missense_Mutation p.A62T 0.15 tolerated_low_confidence(0.07) benign(0.001) TCGA-5M-AAT6-01 17 10348418 10348418 C T MYH4 Missense_Mutation p.A1781T 0.22 deleterious(0.03) probably_damaging(1) TCGA-5M-AAT6-01 17 10545813 10545813 G A MYH3 Silent p.N603N 0.16 TCGA-5M-AAT6-01 17 10629568 10629569 - T TMEM220 Frame_Shift_Ins p.I39Nfs*12 0.10 TCGA-5M-AAT6-01 17 11461190 11461190 C T SHISA6 Nonsense_Mutation p.R409* 0.15 TCGA-5M-AAT6-01 17 12656594 12656594 A G MYOCD Silent p.S663S 0.19 TCGA-5M-AAT6-01 17 13504517 13504517 C - HS3ST3A1 5'UTR 0.20 TCGA-5M-AAT6-01 17 16024480 16024480 G A NCOR1 Missense_Mutation p.R580C 0.21 probably_damaging(0.998) TCGA-5M-AAT6-01 17 16049843 16049843 C T NCOR1 Missense_Mutation p.R310H 0.14 probably_damaging(0.997) TCGA-5M-AAT6-01 17 1657523 1657523 G A SERPINF2 Missense_Mutation p.V391M 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-5M-AAT6-01 17 16723390 16723390 C T AC022596.6 RNA 0.15 TCGA-5M-AAT6-01 17 17046063 17046063 C T MPRIP Missense_Mutation p.A340V 0.18 tolerated(0.65) benign(0.007) TCGA-5M-AAT6-01 17 17697990 17697990 C T RAI1 Silent p.H576H 0.18 TCGA-5M-AAT6-01 17 1782861 1782861 C T RPA1 Silent p.I320I 0.08 TCGA-5M-AAT6-01 17 18144811 18144811 C T LLGL1 Missense_Mutation p.T850M 0.19 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 17 18210210 18210210 T C TOP3A Missense_Mutation p.I129V 0.21 deleterious(0.01) possibly_damaging(0.764) TCGA-5M-AAT6-01 17 18281244 18281245 - A EVPLL 5'UTR 0.11 TCGA-5M-AAT6-01 17 18647469 18647469 T C FBXW10 5'UTR 0.15 TCGA-5M-AAT6-01 17 18925262 18925262 G A GRAP 3'UTR 0.11 TCGA-5M-AAT6-01 17 18925284 18925284 G A GRAP Silent p.P214P 0.11 TCGA-5M-AAT6-01 17 1961618 1961618 C T HIC1 Missense_Mutation p.A564V 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-5M-AAT6-01 17 21322465 21322465 C T KCNJ12 3'UTR 0.11 TCGA-5M-AAT6-01 17 21730912 21730912 C A UBBP4 Missense_Mutation p.R72S 0.18 deleterious(0.05) probably_damaging(0.983) TCGA-5M-AAT6-01 17 25928946 25928946 G A KSR1 Missense_Mutation p.C376Y 0.22 tolerated(0.59) benign(0) TCGA-5M-AAT6-01 17 25969318 25969318 C T LGALS9 Missense_Mutation p.R130C 0.10 tolerated(0.2) benign(0.017) TCGA-5M-AAT6-01 17 26864511 26864511 C T FOXN1 3'UTR 0.20 TCGA-5M-AAT6-01 17 27011614 27011614 G A SUPT6H Missense_Mutation p.R747Q 0.12 tolerated(0.12) benign(0.028) TCGA-5M-AAT6-01 17 27042072 27042072 G T RAB34 Nonsense_Mutation p.Y251* 0.19 TCGA-5M-AAT6-01 17 27207498 27207498 G A FLOT2 3'UTR 0.21 TCGA-5M-AAT6-01 17 27246199 27246199 C A PHF12 Missense_Mutation p.G311C 0.12 deleterious(0.04) benign(0.187) TCGA-5M-AAT6-01 17 27493918 27493918 C T MYO18A Missense_Mutation p.G14E 0.16 deleterious_low_confidence(0.01) benign(0.167) TCGA-5M-AAT6-01 17 27963208 27963208 A - SSH2 Frame_Shift_Del p.F653Lfs*4 0.10 TCGA-5M-AAT6-01 17 27975252 27975252 T C SSH2 Missense_Mutation p.Y419C 0.20 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 17 29214263 29214263 T C ATAD5 Silent p.T1377T 0.12 TCGA-5M-AAT6-01 17 29222118 29222118 T - ATAD5 3'UTR 0.14 TCGA-5M-AAT6-01 17 29231519 29231519 C T TEFM Silent p.S20S 0.16 TCGA-5M-AAT6-01 17 30348240 30348240 T C LRRC37B Silent p.A25A 0.15 TCGA-5M-AAT6-01 17 32964784 32964784 C T TMEM132E Missense_Mutation p.R830C 0.15 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 17 33968971 33968971 C T AP2B1 Nonsense_Mutation p.Q505* 0.09 TCGA-5M-AAT6-01 17 3417747 3417747 C T TRPV3 Intron 0.18 TCGA-5M-AAT6-01 17 34325919 34325919 T - CCL15 Frame_Shift_Del p.N40Ifs*3 0.09 TCGA-5M-AAT6-01 17 34848719 34848719 A G ZNHIT3 Missense_Mutation p.T61A 0.18 tolerated(0.76) benign(0.004) TCGA-5M-AAT6-01 17 35486409 35486409 G A ACACA Silent p.S1942S 0.17 TCGA-5M-AAT6-01 17 35945488 35945488 C T SYNRG Missense_Mutation p.R141H 0.14 deleterious(0) probably_damaging(0.984) TCGA-5M-AAT6-01 17 36002157 36002157 T - DDX52 Frame_Shift_Del p.R90Gfs*4 0.19 TCGA-5M-AAT6-01 17 36491505 36491505 C T GPR179 Missense_Mutation p.V459I 0.08 deleterious(0.03) probably_damaging(0.931) TCGA-5M-AAT6-01 17 37370492 37370492 G A STAC2 Missense_Mutation p.A312V 0.18 deleterious(0.01) possibly_damaging(0.799) TCGA-5M-AAT6-01 17 37420468 37420468 T G FBXL20 Missense_Mutation p.D388A 0.12 deleterious(0) probably_damaging(0.98) TCGA-5M-AAT6-01 17 38319019 38319019 G A CASC3 Missense_Mutation p.R217H 0.10 deleterious(0) probably_damaging(0.986) TCGA-5M-AAT6-01 17 38345468 38345468 C T RAPGEFL1 Missense_Mutation p.R113C 0.14 deleterious(0) possibly_damaging(0.887) TCGA-5M-AAT6-01 17 38504661 38504661 G A RARA Missense_Mutation p.C91Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 17 38711043 38711043 C T CCR7 Missense_Mutation p.R363H 0.10 deleterious(0.01) benign(0.032) TCGA-5M-AAT6-01 17 38978345 38978345 G A KRT10 Missense_Mutation p.R165W 0.15 deleterious(0) probably_damaging(0.991) TCGA-5M-AAT6-01 17 39190708 39197254 17:39190708-39197254 - KRTAP1-3 large deletion 0.10 TCGA-5M-AAT6-01 17 39334274 39334274 G T KRTAP4-2 Missense_Mutation p.P48Q 0.15 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 17 39412499 39412499 T C KRTAP9-9 3'UTR 0.18 TCGA-5M-AAT6-01 17 39577673 39577673 C T KRT37 Missense_Mutation p.R396Q 0.14 tolerated(0.06) benign(0.343) TCGA-5M-AAT6-01 17 39580622 39580622 C T KRT37 Missense_Mutation p.A52T 0.15 tolerated(0.15) benign(0.012) TCGA-5M-AAT6-01 17 40001808 40001808 T C KLHL10 Missense_Mutation p.M372T 0.10 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 17 40042480 40042480 G A ACLY Missense_Mutation p.R653C 0.12 deleterious(0) probably_damaging(0.929) TCGA-5M-AAT6-01 17 40315811 40315811 C T KCNH4 Missense_Mutation p.E764K 0.13 tolerated(0.34) benign(0.254) TCGA-5M-AAT6-01 17 40345515 40345515 G A GHDC Silent p.L29L 0.22 TCGA-5M-AAT6-01 17 40359678 40359678 G A STAT5B Missense_Mutation p.R659C 0.15 deleterious(0) probably_damaging(0.986) TCGA-5M-AAT6-01 17 40456393 40456393 C T STAT5A Silent p.C401C 0.18 TCGA-5M-AAT6-01 17 40556804 40556804 G A PTRF Silent p.A358A 0.16 TCGA-5M-AAT6-01 17 40629659 40629659 T C ATP6V0A1 Silent p.A142A 0.20 TCGA-5M-AAT6-01 17 40936078 40936078 C T WNK4 Silent p.C305C 0.15 TCGA-5M-AAT6-01 17 40947841 40947841 A G WNK4 Missense_Mutation p.D1074G 0.12 tolerated(0.17) probably_damaging(0.995) TCGA-5M-AAT6-01 17 41004848 41004848 C T AOC3 Silent p.S496S 0.20 TCGA-5M-AAT6-01 17 41008506 41008506 A C AOC3 Missense_Mutation p.Q744P 0.12 tolerated(0.07) possibly_damaging(0.627) TCGA-5M-AAT6-01 17 41150742 41150742 G T RPL27 5'UTR 0.11 TCGA-5M-AAT6-01 17 41158801 41158802 - A IFI35 5'UTR 0.11 TCGA-5M-AAT6-01 17 41345510 41345510 G A NBR1 Missense_Mutation p.R460H 0.16 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 17 41903142 41903142 G A MPP3 Silent p.D197D 0.10 TCGA-5M-AAT6-01 17 41907093 41907093 C T MPP3 Missense_Mutation p.D124N 0.12 deleterious(0.02) benign(0.018) TCGA-5M-AAT6-01 17 42155666 42155666 A G HDAC5 3'UTR 0.08 TCGA-5M-AAT6-01 17 42225860 42225860 T C C17orf53 Missense_Mutation p.L230P 0.15 tolerated(0.25) benign(0.006) TCGA-5M-AAT6-01 17 42231967 42231967 C T C17orf53 Missense_Mutation p.A499V 0.16 deleterious(0) possibly_damaging(0.793) TCGA-5M-AAT6-01 17 42287793 42287793 T C UBTF Missense_Mutation p.K470E 0.14 tolerated(0.13) benign(0.411) TCGA-5M-AAT6-01 17 42335364 42335364 G A SLC4A1 Silent p.G424G 0.20 TCGA-5M-AAT6-01 17 42397774 42397774 C T SLC25A39 Missense_Mutation p.V278M 0.15 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 17 42429530 42429530 G A GRN Missense_Mutation p.G443S 0.06 tolerated(0.49) benign(0.06) TCGA-5M-AAT6-01 17 42455823 42455823 G A ITGA2B Silent p.D667D 0.10 TCGA-5M-AAT6-01 17 42815766 42815766 G A DBF4B Silent p.P229P 0.12 TCGA-5M-AAT6-01 17 43363884 43363884 G A MAP3K14 RNA 0.19 TCGA-5M-AAT6-01 17 43585798 43585798 A T LRRC37A4P Intron 0.14 TCGA-5M-AAT6-01 17 43912005 43912005 C T CRHR1 Missense_Mutation p.R404W 0.12 deleterious(0) probably_damaging(0.918) TCGA-5M-AAT6-01 17 4447798 4447798 C T MYBBP1A Silent p.T875T 0.23 TCGA-5M-AAT6-01 17 44788356 44788356 G A NSF Missense_Mutation p.A500T 0.16 tolerated(0.22) benign(0) TCGA-5M-AAT6-01 17 4576283 4576283 G A PELP1 Missense_Mutation p.P668L 0.18 possibly_damaging(0.726) TCGA-5M-AAT6-01 17 45774515 45774516 CT - TBKBP1 Frame_Shift_Del p.C138Rfs*5 0.09 TCGA-5M-AAT6-01 17 45891179 45891179 G A OSBPL7 Missense_Mutation p.P458L 0.12 tolerated(0.21) benign(0) TCGA-5M-AAT6-01 17 45924682 45924682 C T SP6 Missense_Mutation p.V372M 0.17 deleterious_low_confidence(0.02) unknown(0) TCGA-5M-AAT6-01 17 46024108 46024108 G A PNPO Missense_Mutation p.R249H 0.12 tolerated(0.24) benign(0) TCGA-5M-AAT6-01 17 4643965 4643965 G A ZMYND15 Missense_Mutation p.R41Q 0.17 deleterious_low_confidence(0.03) benign(0.02) TCGA-5M-AAT6-01 17 46940552 46940552 T C CALCOCO2 3'UTR 0.11 TCGA-5M-AAT6-01 17 4720043 4720043 T C PLD2 Splice_Site p.X528_splice 0.09 TCGA-5M-AAT6-01 17 47237971 47237971 C A B4GALNT2 Missense_Mutation p.P305H 0.09 deleterious(0.02) benign(0.411) TCGA-5M-AAT6-01 17 47696346 47696346 G A SPOP Silent p.C159C 0.11 TCGA-5M-AAT6-01 17 4799092 4799093 - G MINK1 Frame_Shift_Ins p.D1112Gfs*17 0.09 TCGA-5M-AAT6-01 17 4805689 4805689 G - C17orf107 3'UTR 0.11 TCGA-5M-AAT6-01 17 48155489 48155489 C T ITGA3 Missense_Mutation p.T740M 0.12 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 17 48156836 48156836 G A ITGA3 Missense_Mutation p.R874Q 0.17 tolerated(0.09) probably_damaging(0.935) TCGA-5M-AAT6-01 17 48245784 48245784 G A SGCA Silent p.A145A 0.17 TCGA-5M-AAT6-01 17 48252639 48252639 C T SGCA Silent p.C335C 0.15 TCGA-5M-AAT6-01 17 48263222 48263222 G A COL1A1 Missense_Mutation p.L1389F 0.18 unknown(0) TCGA-5M-AAT6-01 17 48435604 48435604 C T XYLT2 Missense_Mutation p.R660W 0.07 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 17 48472338 48472338 T C LRRC59 Silent p.P39P 0.18 TCGA-5M-AAT6-01 17 48593992 48593992 T C MYCBPAP Silent p.P89P 0.16 TCGA-5M-AAT6-01 17 48653263 48653263 C T CACNA1G Silent p.H500H 0.13 TCGA-5M-AAT6-01 17 48744943 48744943 G A ABCC3 Missense_Mutation p.R487H 0.10 deleterious(0) probably_damaging(0.988) TCGA-5M-AAT6-01 17 4883220 4883220 G - CAMTA2 Frame_Shift_Del p.P489Lfs*17 0.20 TCGA-5M-AAT6-01 17 5393357 5393357 T - MIS12 3'UTR 0.10 TCGA-5M-AAT6-01 17 56083311 56083311 G A SRSF1 Nonsense_Mutation p.Q135* 0.22 TCGA-5M-AAT6-01 17 56084466 56084466 T C SRSF1 Silent p.A11A 0.23 TCGA-5M-AAT6-01 17 56435134 56435134 C T RNF43 Missense_Mutation p.R668Q 0.23 tolerated_low_confidence(0.37) benign(0.003) TCGA-5M-AAT6-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.27 TCGA-5M-AAT6-01 17 56499605 56499605 A - HSF5 3'UTR 0.11 TCGA-5M-AAT6-01 17 57808799 57808799 A G VMP1 5'UTR 0.11 TCGA-5M-AAT6-01 17 59485586 59485586 C T TBX2 Missense_Mutation p.R620C 0.12 deleterious(0) probably_damaging(0.99) TCGA-5M-AAT6-01 17 59668312 59668312 C T NACA2 Missense_Mutation p.R77Q 0.10 tolerated(0.07) possibly_damaging(0.841) TCGA-5M-AAT6-01 17 60757573 60757573 G A MRC2 Missense_Mutation p.D781N 0.15 tolerated(0.29) benign(0.048) TCGA-5M-AAT6-01 17 60837317 60837317 T C MARCH10 Missense_Mutation p.I87M 0.16 tolerated(0.05) benign(0.321) TCGA-5M-AAT6-01 17 61655939 61655939 G A DCAF7 Intron 0.12 TCGA-5M-AAT6-01 17 61949806 61949806 C T CSH2 Intron 0.08 TCGA-5M-AAT6-01 17 62018424 62018424 G A SCN4A Missense_Mutation p.R1740W 0.17 deleterious(0) probably_damaging(0.918) TCGA-5M-AAT6-01 17 62496033 62496033 C T DDX5 3'UTR 0.25 TCGA-5M-AAT6-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.16 TCGA-5M-AAT6-01 17 649981 649981 C T GEMIN4 Silent p.S434S 0.11 TCGA-5M-AAT6-01 17 65191571 65191571 C T HELZ Missense_Mutation p.A149T 0.14 tolerated(0.25) benign(0.004) TCGA-5M-AAT6-01 17 66347808 66347808 C T ARSG Nonsense_Mutation p.Q183* 0.14 TCGA-5M-AAT6-01 17 6683694 6683694 A - FBXO39 Frame_Shift_Del p.A172Pfs*3 0.11 TCGA-5M-AAT6-01 17 6683980 6683980 G A FBXO39 Missense_Mutation p.G265R 0.07 tolerated(0.54) benign(0.099) TCGA-5M-AAT6-01 17 67310685 67310685 A G ABCA5 Intron 0.12 TCGA-5M-AAT6-01 17 6921268 6921268 A G RNASEK 3'Flank 0.12 TCGA-5M-AAT6-01 17 7094001 7094001 G A DLG4 3'UTR 0.12 TCGA-5M-AAT6-01 17 71189209 71189209 A G COG1 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0.04) benign(0.003) TCGA-5M-AAT6-01 17 7129754 7129754 C T DVL2 Missense_Mutation p.S583N 0.17 deleterious(0.01) possibly_damaging(0.517) TCGA-5M-AAT6-01 17 71335063 71335063 T C SDK2 Missense_Mutation p.Y2061C 0.14 tolerated(0.13) benign(0.055) TCGA-5M-AAT6-01 17 71346825 71346825 C T SDK2 Missense_Mutation p.G1955S 0.12 tolerated(0.22) probably_damaging(1) TCGA-5M-AAT6-01 17 7139520 7139520 G - PHF23 Frame_Shift_Del p.S243Vfs*24 0.16 TCGA-5M-AAT6-01 17 71419589 71419589 C T SDK2 Silent p.T611T 0.26 TCGA-5M-AAT6-01 17 7145724 7145724 G A GABARAP 5'UTR 0.26 TCGA-5M-AAT6-01 17 72342551 72342551 C - KIF19 Frame_Shift_Del p.H272Tfs*16 0.14 TCGA-5M-AAT6-01 17 7247187 7247187 G A ACAP1 Missense_Mutation p.R194H 0.16 deleterious(0) benign(0.001) TCGA-5M-AAT6-01 17 72947714 72947714 G - HID1 Frame_Shift_Del p.P773Lfs*8 0.11 TCGA-5M-AAT6-01 17 7324919 7324919 A G SPEM1 Missense_Mutation p.R309G 0.17 deleterious(0) benign(0.007) TCGA-5M-AAT6-01 17 73489108 73489108 C T KIAA0195 Missense_Mutation p.R671W 0.10 deleterious(0) possibly_damaging(0.822) TCGA-5M-AAT6-01 17 7366247 7366247 C A ZBTB4 Missense_Mutation p.G685V 0.15 benign(0.027) TCGA-5M-AAT6-01 17 73662569 73662569 G T RECQL5 Silent p.V23V 0.17 TCGA-5M-AAT6-01 17 73761168 73761168 C T GALK1 Missense_Mutation p.R17Q 0.13 tolerated(0.37) benign(0.006) TCGA-5M-AAT6-01 17 73998463 73998463 C T CDK3 Silent p.R150R 0.14 TCGA-5M-AAT6-01 17 74003266 74003266 C T EVPL Missense_Mutation p.G2007D 0.15 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 17 7401439 7401439 C T POLR2A Silent p.G415G 0.17 TCGA-5M-AAT6-01 17 74134014 74134014 G A FOXJ1 Missense_Mutation p.A229V 0.09 tolerated(0.32) benign(0.005) TCGA-5M-AAT6-01 17 74303609 74303609 C T QRICH2 5'UTR 0.16 TCGA-5M-AAT6-01 17 74465275 74465275 G A AANAT Missense_Mutation p.V107I 0.16 tolerated(0.55) benign(0.003) TCGA-5M-AAT6-01 17 74566715 74566715 G A ST6GALNAC2 Silent p.R235R 0.21 TCGA-5M-AAT6-01 17 7491760 7491760 G - SOX15 Frame_Shift_Del p.P213Lfs*18 0.15 TCGA-5M-AAT6-01 17 74944053 74944053 C A MGAT5B Missense_Mutation p.L698M 0.10 tolerated(0.13) possibly_damaging(0.499) TCGA-5M-AAT6-01 17 75316366 75316366 C T SEPT9 Intron 0.14 TCGA-5M-AAT6-01 17 75486898 75486898 C T SEPT9 Missense_Mutation p.A446V 0.17 deleterious(0.01) benign(0.262) TCGA-5M-AAT6-01 17 76227552 76227552 C T TMEM235 5'Flank 0.16 TCGA-5M-AAT6-01 17 76471887 76471887 T G DNAH17 Missense_Mutation p.K2714T 0.09 benign(0.016) TCGA-5M-AAT6-01 17 76482457 76482457 G A DNAH17 Missense_Mutation p.P2303L 0.17 benign(0.061) TCGA-5M-AAT6-01 17 78182050 78182050 G A CARD14 Missense_Mutation p.G974D 0.14 deleterious(0.01) benign(0.063) TCGA-5M-AAT6-01 17 78320054 78320054 A G RNF213 Missense_Mutation p.D2640G 0.07 probably_damaging(0.999) TCGA-5M-AAT6-01 17 7911282 7911282 C T GUCY2D Missense_Mutation p.R534C 0.13 deleterious(0.02) benign(0.01) TCGA-5M-AAT6-01 17 79165047 79165047 A G AZI1 Missense_Mutation p.L904P 0.20 deleterious(0) probably_damaging(0.992) TCGA-5M-AAT6-01 17 79226973 79226974 CT - SLC38A10 Frame_Shift_Del p.E452Gfs*58 0.10 TCGA-5M-AAT6-01 17 79411411 79411411 A T RP11-1055B8.7 Missense_Mutation p.S777C 0.19 possibly_damaging(0.634) TCGA-5M-AAT6-01 17 79478426 79478426 C T ACTG1 Missense_Mutation p.G197D 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-5M-AAT6-01 17 79511104 79511104 C T C17orf70 Missense_Mutation p.V785M 0.10 tolerated(0.06) benign(0.333) TCGA-5M-AAT6-01 17 79637474 79637475 - A CCDC137 Frame_Shift_Ins p.A166Sfs*9 0.09 TCGA-5M-AAT6-01 17 79894774 79894774 G - PYCR1 5'Flank 0.17 TCGA-5M-AAT6-01 17 7989529 7989529 A G ALOX12B Missense_Mutation p.Y53H 0.14 deleterious(0.04) possibly_damaging(0.882) TCGA-5M-AAT6-01 17 79898867 79898867 C A MYADML2 Missense_Mutation p.V251F 0.15 deleterious(0) benign(0.366) TCGA-5M-AAT6-01 17 79983016 79983016 C T LRRC45 Missense_Mutation p.A165V 0.15 deleterious(0) probably_damaging(0.985) TCGA-5M-AAT6-01 17 80046285 80046285 T C FASN Silent p.S858S 0.16 TCGA-5M-AAT6-01 17 80048928 80048928 G A FASN Missense_Mutation p.R504C 0.11 tolerated(0.12) benign(0.006) TCGA-5M-AAT6-01 17 80050631 80050631 G A FASN Missense_Mutation p.S279L 0.20 deleterious(0.02) benign(0.049) TCGA-5M-AAT6-01 17 8012504 8012504 G A ALOXE3 Missense_Mutation p.A649V 0.13 tolerated(0.26) possibly_damaging(0.523) TCGA-5M-AAT6-01 17 80146228 80146228 C T CCDC57 Missense_Mutation p.V307M 0.12 deleterious(0.05) benign(0.063) TCGA-5M-AAT6-01 17 8026375 8026375 G A HES7 Silent p.L38L 0.21 TCGA-5M-AAT6-01 17 80350368 80350368 C T OGFOD3 3'UTR 0.15 TCGA-5M-AAT6-01 17 80416593 80416594 GG C NARF 5'UTR 0.27 TCGA-5M-AAT6-01 17 80708335 80708335 G A FN3K Missense_Mutation p.A212T 0.15 deleterious(0) probably_damaging(0.966) TCGA-5M-AAT6-01 17 80904821 80904821 T C B3GNTL1 Silent p.S348S 0.10 TCGA-5M-AAT6-01 17 80915292 80915292 G A B3GNTL1 Silent p.N268N 0.14 TCGA-5M-AAT6-01 17 8151339 8151339 C T CTC1 Missense_Mutation p.A6T 0.15 tolerated(0.06) benign(0.007) TCGA-5M-AAT6-01 17 8168919 8168919 C T PFAS Missense_Mutation p.A836V 0.15 tolerated(0.32) benign(0.01) TCGA-5M-AAT6-01 17 8732154 8732154 G A PIK3R6 Missense_Mutation p.T348M 0.19 tolerated(0.24) benign(0.005) TCGA-5M-AAT6-01 17 9820600 9820600 A C GAS7 Missense_Mutation p.L459R 0.10 tolerated(0.11) benign(0.104) TCGA-5M-AAT6-01 18 11853257 11853257 A C CHMP1B 3'UTR 0.14 TCGA-5M-AAT6-01 18 12859184 12859184 T C PTPN2 Missense_Mutation p.R47G 0.16 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 18 13001510 13001510 C T CEP192 Silent p.S73S 0.14 TCGA-5M-AAT6-01 18 13073110 13073110 C T CEP192 Nonsense_Mutation p.R1848* 0.16 TCGA-5M-AAT6-01 18 14479261 14479261 C T CXADRP3 RNA 0.14 TCGA-5M-AAT6-01 18 14843074 14843074 A T ANKRD30B Missense_Mutation p.N935Y 0.05 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 18 19102657 19102657 T C GREB1L Silent p.L1883L 0.16 TCGA-5M-AAT6-01 18 20953705 20953705 C T TMEM241 Missense_Mutation p.A136T 0.12 deleterious(0.01) possibly_damaging(0.786) TCGA-5M-AAT6-01 18 21447873 21447873 G A LAMA3 Missense_Mutation p.V1587M 0.12 benign(0.065) TCGA-5M-AAT6-01 18 21461990 21461990 C T LAMA3 Missense_Mutation p.P1735S 0.16 possibly_damaging(0.857) TCGA-5M-AAT6-01 18 21479357 21479357 G A LAMA3 Missense_Mutation p.R1981Q 0.14 benign(0.382) TCGA-5M-AAT6-01 18 22806432 22806432 C T ZNF521 Missense_Mutation p.E484K 0.15 tolerated(0.08) benign(0.385) TCGA-5M-AAT6-01 18 23873456 23873456 A G TAF4B Missense_Mutation p.Q598R 0.13 tolerated(0.08) benign(0.01) TCGA-5M-AAT6-01 18 28916337 28916337 G A DSG1 Missense_Mutation p.M342I 0.19 tolerated(0.34) benign(0.004) TCGA-5M-AAT6-01 18 28956852 28956852 G A DSG4 5'UTR 0.18 TCGA-5M-AAT6-01 18 32887557 32887557 C T ZNF271 RNA 0.15 TCGA-5M-AAT6-01 18 34297906 34297906 C T FHOD3 Missense_Mutation p.P707L 0.13 tolerated(0.35) benign(0.008) TCGA-5M-AAT6-01 18 34854478 34854478 T C CELF4 Intron 0.09 TCGA-5M-AAT6-01 18 42531100 42531100 G A SETBP1 Missense_Mutation p.E599K 0.14 deleterious(0) probably_damaging(0.995) TCGA-5M-AAT6-01 18 42531185 42531185 G A SETBP1 Missense_Mutation p.R627H 0.12 tolerated(0.42) probably_damaging(0.997) TCGA-5M-AAT6-01 18 43262670 43262670 G T SLC14A2 3'UTR 0.21 TCGA-5M-AAT6-01 18 43578775 43578775 C T PSTPIP2 Missense_Mutation p.A183T 0.19 tolerated(0.21) benign(0.021) TCGA-5M-AAT6-01 18 43675012 43675012 A G ATP5A1 Intron 0.07 TCGA-5M-AAT6-01 18 44113144 44113144 T G LOXHD1 Missense_Mutation p.E341D 0.16 tolerated(0.06) probably_damaging(0.989) TCGA-5M-AAT6-01 18 44260375 44260375 T C ST8SIA5 Missense_Mutation p.N254S 0.16 probably_damaging(0.999) TCGA-5M-AAT6-01 18 45566280 45566280 C T ZBTB7C Missense_Mutation p.R400H 0.14 deleterious(0.01) benign(0.012) TCGA-5M-AAT6-01 18 47390530 47390530 C T MYO5B Missense_Mutation p.R1275Q 0.13 tolerated(0.28) benign(0.01) TCGA-5M-AAT6-01 18 47809897 47809897 G A CXXC1 Missense_Mutation p.T525I 0.16 deleterious(0) probably_damaging(0.991) TCGA-5M-AAT6-01 18 50977011 50977011 G A DCC Missense_Mutation p.R1124H 0.11 deleterious(0) probably_damaging(0.994) TCGA-5M-AAT6-01 18 51013181 51013181 A G DCC Missense_Mutation p.I1251V 0.16 tolerated(0.46) possibly_damaging(0.781) TCGA-5M-AAT6-01 18 52896108 52896108 C T TCF4 Missense_Mutation p.V719I 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-5M-AAT6-01 18 55020114 55020114 C T ST8SIA3 Silent p.L13L 0.21 TCGA-5M-AAT6-01 18 56202262 56202262 G A ALPK2 Silent p.G1719G 0.16 TCGA-5M-AAT6-01 18 60242151 60242151 C T ZCCHC2 Missense_Mutation p.A946V 0.17 tolerated(0.11) benign(0.006) TCGA-5M-AAT6-01 18 61323152 61323152 C A SERPINB3 Missense_Mutation p.M304I 0.17 tolerated(0.11) benign(0.021) TCGA-5M-AAT6-01 18 63477090 63477090 C T CDH7 Nonsense_Mutation p.R121* 0.18 TCGA-5M-AAT6-01 18 6999910 6999910 C A LAMA1 Missense_Mutation p.R1490M 0.11 deleterious(0) possibly_damaging(0.903) TCGA-5M-AAT6-01 18 72103819 72103819 G A FAM69C Missense_Mutation p.R393W 0.08 tolerated(0.22) benign(0.003) TCGA-5M-AAT6-01 18 74153358 74153358 C T ZNF516 Silent p.A551A 0.16 TCGA-5M-AAT6-01 18 74153969 74153969 C T ZNF516 Missense_Mutation p.D348N 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-5M-AAT6-01 18 74668077 74668077 G A ZNF236 Missense_Mutation p.R1682Q 0.11 tolerated(0.11) benign(0.006) TCGA-5M-AAT6-01 18 76755312 76755312 C T SALL3 Silent p.R1107R 0.13 TCGA-5M-AAT6-01 18 77513650 77513650 A G CTDP1 Splice_Site p.X916_splice 0.13 TCGA-5M-AAT6-01 18 77894624 77894624 C T ADNP2 Missense_Mutation p.A443V 0.19 tolerated(0.23) benign(0.015) TCGA-5M-AAT6-01 19 10225258 10225258 C T PPAN-P2RY11 Silent p.A743A 0.16 TCGA-5M-AAT6-01 19 10250952 10250952 C T DNMT1 Silent p.A1192A 0.10 TCGA-5M-AAT6-01 19 1037814 1037814 G T CNN2 Missense_Mutation p.G282V 0.15 tolerated(0.07) possibly_damaging(0.655) TCGA-5M-AAT6-01 19 11040489 11040489 C T C19orf52 3'UTR 0.17 TCGA-5M-AAT6-01 19 1109307 1109307 C T SBNO2 Missense_Mutation p.R1111H 0.13 tolerated(0.24) benign(0.001) TCGA-5M-AAT6-01 19 11123722 11123722 C T SMARCA4 Missense_Mutation p.A791V 0.21 probably_damaging(0.977) TCGA-5M-AAT6-01 19 11218109 11218109 G A LDLR Missense_Mutation p.G287S 0.08 deleterious(0.01) probably_damaging(0.95) TCGA-5M-AAT6-01 19 11303676 11303676 G A KANK2 Silent p.Y360Y 0.12 TCGA-5M-AAT6-01 19 11352721 11352721 C A DOCK6 Missense_Mutation p.R548M 0.19 deleterious(0) probably_damaging(0.989) TCGA-5M-AAT6-01 19 11577462 11577462 C T ELAVL3 Missense_Mutation p.D64N 0.20 deleterious(0.05) benign(0.018) TCGA-5M-AAT6-01 19 12575800 12575800 T - ZNF709 Frame_Shift_Del p.K312Nfs*44 0.15 TCGA-5M-AAT6-01 19 12779952 12779952 A G WDR83OS Missense_Mutation p.L49P 0.13 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 19 12800395 12800395 A G FBXW9 Missense_Mutation p.V399A 0.18 tolerated(0.77) benign(0.007) TCGA-5M-AAT6-01 19 12826055 12826055 A G TNPO2 Splice_Site p.X216_splice 0.12 TCGA-5M-AAT6-01 19 12984315 12984315 C A MAST1 Silent p.S1147S 0.06 TCGA-5M-AAT6-01 19 13409401 13409401 C - CACNA1A Frame_Shift_Del p.D1016Tfs*53 0.15 TCGA-5M-AAT6-01 19 13410106 13410106 T C CACNA1A Missense_Mutation p.M781V 0.02 benign(0.14) TCGA-5M-AAT6-01 19 13476210 13476210 A - CACNA1A Frame_Shift_Del p.F235Lfs*9 0.09 TCGA-5M-AAT6-01 19 1401310 1401310 C T GAMT Missense_Mutation p.A56T 0.18 tolerated(0.21) benign(0.327) TCGA-5M-AAT6-01 19 1467724 1467724 C - APC2 Frame_Shift_Del p.A1477Qfs*103 0.25 TCGA-5M-AAT6-01 19 14758113 14758113 A - EMR3 Frame_Shift_Del p.F254Lfs*12 0.14 TCGA-5M-AAT6-01 19 15067329 15067330 - C SLC1A6 Frame_Shift_Ins p.M377Hfs*66 0.10 TCGA-5M-AAT6-01 19 15288710 15288710 G - NOTCH3 Frame_Shift_Del p.C1344Vfs*76 0.10 TCGA-5M-AAT6-01 19 15291593 15291593 C T NOTCH3 Missense_Mutation p.R1014H 0.08 tolerated(0.2) benign(0.178) TCGA-5M-AAT6-01 19 15300125 15300125 G A NOTCH3 Missense_Mutation p.T384M 0.20 tolerated(0.09) probably_damaging(0.992) TCGA-5M-AAT6-01 19 15482786 15482786 A C AKAP8 Missense_Mutation p.S339A 0.14 tolerated(0.09) possibly_damaging(0.736) TCGA-5M-AAT6-01 19 15508329 15508329 A G AKAP8L Splice_Site p.X469_splice 0.17 TCGA-5M-AAT6-01 19 15535569 15535569 G A WIZ Silent p.P628P 0.18 TCGA-5M-AAT6-01 19 1555780 1555780 C T MEX3D Missense_Mutation p.A580T 0.21 tolerated(0.18) benign(0.001) TCGA-5M-AAT6-01 19 15568557 15568557 A G RASAL3 Missense_Mutation p.V326A 0.12 tolerated(0.15) benign(0.009) TCGA-5M-AAT6-01 19 15587175 15587175 T C PGLYRP2 Silent p.V102V 0.18 TCGA-5M-AAT6-01 19 15905697 15905697 C T OR10H5 Missense_Mutation p.T280M 0.15 deleterious(0.02) probably_damaging(0.963) TCGA-5M-AAT6-01 19 15918571 15918571 C T OR10H1 Missense_Mutation p.A93T 0.15 tolerated(0.22) benign(0.001) TCGA-5M-AAT6-01 19 16212306 16212306 G A TPM4 3'UTR 0.06 TCGA-5M-AAT6-01 19 16601337 16601337 G A CALR3 Missense_Mutation p.R80C 0.14 deleterious(0) probably_damaging(0.965) TCGA-5M-AAT6-01 19 16688042 16688042 C A MED26 Missense_Mutation p.G200V 0.17 tolerated(0.4) benign(0.424) TCGA-5M-AAT6-01 19 16688092 16688092 G A MED26 Silent p.N183N 0.16 TCGA-5M-AAT6-01 19 16689204 16689204 G A MED26 Missense_Mutation p.A30V 0.15 tolerated(0.6) benign(0.26) TCGA-5M-AAT6-01 19 17343274 17343274 T C NR2F6 Missense_Mutation p.I368V 0.12 tolerated(0.08) possibly_damaging(0.73) TCGA-5M-AAT6-01 19 17660273 17660273 G A FAM129C Missense_Mutation p.A594T 0.23 tolerated(0.13) benign(0.046) TCGA-5M-AAT6-01 19 17737525 17737525 G A UNC13A Silent p.G1330G 0.17 TCGA-5M-AAT6-01 19 17918594 17918594 A G B3GNT3 5'UTR 0.10 TCGA-5M-AAT6-01 19 17918982 17918982 C T B3GNT3 Silent p.R122R 0.16 TCGA-5M-AAT6-01 19 18092866 18092866 G A KCNN1 Missense_Mutation p.G283S 0.21 deleterious(0.04) benign(0.206) TCGA-5M-AAT6-01 19 18121490 18121490 C T ARRDC2 Silent p.F374F 0.22 TCGA-5M-AAT6-01 19 18271335 18271335 C T PIK3R2 Missense_Mutation p.P126L 0.09 tolerated(0.1) probably_damaging(0.912) TCGA-5M-AAT6-01 19 18333008 18333008 C T PDE4C Missense_Mutation p.R123H 0.08 deleterious(0) possibly_damaging(0.81) TCGA-5M-AAT6-01 19 18368556 18368556 C T KIAA1683 Missense_Mutation p.A1180T 0.12 tolerated(0.61) benign(0.012) TCGA-5M-AAT6-01 19 18980842 18980842 A G GDF1 Missense_Mutation p.V92A 0.06 deleterious(0) possibly_damaging(0.481) TCGA-5M-AAT6-01 19 18981190 18981190 C T GDF1 5'UTR 0.16 TCGA-5M-AAT6-01 19 18981216 18981217 - G GDF1 5'UTR 0.12 TCGA-5M-AAT6-01 19 18990066 18990066 T G CERS1 Missense_Mutation p.N295T 0.21 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 19 19037116 19037116 G A DDX49 Silent p.R344R 0.11 TCGA-5M-AAT6-01 19 19649088 19649088 C A CILP2 5'UTR 0.15 TCGA-5M-AAT6-01 19 19757060 19757060 T G ATP13A1 Missense_Mutation p.S1068R 0.14 deleterious(0.01) possibly_damaging(0.809) TCGA-5M-AAT6-01 19 2117277 2117277 A G AP3D1 Silent p.A601A 0.17 TCGA-5M-AAT6-01 19 2121819 2121819 G A AP3D1 Nonsense_Mutation p.Q339* 0.16 TCGA-5M-AAT6-01 19 23926337 23926337 T - ZNF681 3'UTR 0.32 TCGA-5M-AAT6-01 19 23927965 23927965 T C ZNF681 Silent p.G129G 0.11 TCGA-5M-AAT6-01 19 3013796 3013796 G - TLE2 Frame_Shift_Del p.S249Afs*43 0.16 TCGA-5M-AAT6-01 19 33168684 33168684 G A RGS9BP 3'UTR 0.14 TCGA-5M-AAT6-01 19 33464141 33464141 C T C19orf40 Silent p.H13H 0.16 TCGA-5M-AAT6-01 19 33623282 33623282 G A WDR88 Silent p.P69P 0.14 TCGA-5M-AAT6-01 19 33698023 33698023 C A LRP3 Silent p.R619R 0.14 TCGA-5M-AAT6-01 19 34710328 34710328 C T LSM14A Missense_Mutation p.R272C 0.19 tolerated(0.06) benign(0.329) TCGA-5M-AAT6-01 19 3491745 3491745 G A DOHH Silent p.H218H 0.16 TCGA-5M-AAT6-01 19 34984508 34984508 T C WTIP Missense_Mutation p.C338R 0.13 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 19 35231886 35231886 T C ZNF181 Silent p.N200N 0.15 TCGA-5M-AAT6-01 19 35422771 35422771 G A ZNF30 Missense_Mutation p.G12R 0.09 tolerated(0.17) possibly_damaging(0.671) TCGA-5M-AAT6-01 19 35770059 35770059 G A USF2 Intron 0.08 TCGA-5M-AAT6-01 19 35800990 35800990 C T MAG Missense_Mutation p.A482V 0.11 tolerated(0.2) benign(0.057) TCGA-5M-AAT6-01 19 36027728 36027728 G A GAPDHS Silent p.P27P 0.09 TCGA-5M-AAT6-01 19 36220869 36220869 G A KMT2B Missense_Mutation p.R1640H 0.12 probably_damaging(0.991) TCGA-5M-AAT6-01 19 36224688 36224688 G A KMT2B Silent p.L2358L 0.11 TCGA-5M-AAT6-01 19 36360701 36360701 T C APLP1 Missense_Mutation p.Y94H 0.18 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 19 36497729 36497729 G A SYNE4 Missense_Mutation p.R181W 0.22 deleterious(0.01) benign(0.037) TCGA-5M-AAT6-01 19 36517607 36517607 G A CLIP3 Missense_Mutation p.A148V 0.21 tolerated(0.26) benign(0.146) TCGA-5M-AAT6-01 19 37063275 37063275 G - ZNF529 5'UTR 0.11 TCGA-5M-AAT6-01 19 37316578 37316578 G A ZNF790 5'UTR 0.11 TCGA-5M-AAT6-01 19 37370227 37370227 A - ZNF345 3'UTR 0.10 TCGA-5M-AAT6-01 19 3751515 3751515 C T APBA3 Missense_Mutation p.V478I 0.17 tolerated(0.07) benign(0.119) TCGA-5M-AAT6-01 19 3754076 3754076 T C APBA3 Missense_Mutation p.T264A 0.13 deleterious(0.03) benign(0.006) TCGA-5M-AAT6-01 19 3778129 3778129 C A MATK 3'UTR 0.13 TCGA-5M-AAT6-01 19 3784848 3784848 G - MATK Frame_Shift_Del p.P37Lfs*125 0.15 TCGA-5M-AAT6-01 19 3805979 3805979 G A ZFR2 Missense_Mutation p.R930W 0.16 deleterious(0) unknown(0) TCGA-5M-AAT6-01 19 38102620 38102620 A - ZNF540 Frame_Shift_Del p.M149Cfs*12 0.13 TCGA-5M-AAT6-01 19 38202586 38202586 A G ZNF607 5'UTR 0.10 TCGA-5M-AAT6-01 19 38380366 38380366 C T WDR87 Missense_Mutation p.M1276I 0.09 benign(0.002) TCGA-5M-AAT6-01 19 38828240 38828240 T C CATSPERG Missense_Mutation p.L93P 0.05 deleterious(0) possibly_damaging(0.883) TCGA-5M-AAT6-01 19 38865403 38865403 A G PSMD8 Silent p.S54S 0.12 TCGA-5M-AAT6-01 19 38901884 38901884 C T RASGRP4 Missense_Mutation p.G575R 0.17 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 19 38943477 38943477 C T RYR1 Silent p.S421S 0.17 TCGA-5M-AAT6-01 19 39019003 39019003 C T RYR1 Missense_Mutation p.R3628C 0.21 benign(0.34) TCGA-5M-AAT6-01 19 39589194 39589194 G A PAPL Missense_Mutation p.R73H 0.15 tolerated(0.1) benign(0.006) TCGA-5M-AAT6-01 19 39694743 39694743 T C SYCN Missense_Mutation p.N51S 0.16 tolerated(0.08) benign(0.287) TCGA-5M-AAT6-01 19 39963888 39963888 G A SUPT5H Silent p.T768T 0.10 TCGA-5M-AAT6-01 19 39963908 39963908 C T SUPT5H Missense_Mutation p.T775M 0.27 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 19 39980603 39980603 G T TIMM50 3'Flank 0.15 TCGA-5M-AAT6-01 19 4013341 4013341 G A PIAS4 Missense_Mutation p.E150K 0.21 deleterious(0.01) probably_damaging(0.939) TCGA-5M-AAT6-01 19 4047852 4047852 G A ZBTB7A Silent p.D551D 0.15 TCGA-5M-AAT6-01 19 40580650 40580650 G A ZNF780A Nonsense_Mutation p.R568* 0.17 TCGA-5M-AAT6-01 19 41430325 41430325 G T CYP2B7P RNA 0.10 TCGA-5M-AAT6-01 19 41442083 41442083 C T CYP2B7P RNA 0.16 TCGA-5M-AAT6-01 19 41518337 41518337 G A CYP2B6 Missense_Mutation p.V367M 0.14 deleterious(0.03) benign(0.178) TCGA-5M-AAT6-01 19 41601683 41601683 G A CYP2A13 Missense_Mutation p.G441E 0.14 deleterious(0) probably_damaging(0.982) TCGA-5M-AAT6-01 19 41601848 41601848 C T CYP2A13 3'UTR 0.17 TCGA-5M-AAT6-01 19 41860798 41860798 G A B9D2 Missense_Mutation p.T112M 0.19 deleterious(0.01) probably_damaging(0.909) TCGA-5M-AAT6-01 19 4199957 4199957 G A ANKRD24 Missense_Mutation p.R70H 0.17 tolerated(0.12) probably_damaging(0.954) TCGA-5M-AAT6-01 19 42126962 42126962 G - CEACAM4 Frame_Shift_Del p.P194Qfs*86 0.10 TCGA-5M-AAT6-01 19 42373111 42373111 G A RPS19 Silent p.A61A 0.15 TCGA-5M-AAT6-01 19 42400555 42400555 G T ARHGEF1 Missense_Mutation p.S389I 0.14 tolerated(0.07) probably_damaging(0.997) TCGA-5M-AAT6-01 19 42703776 42703776 G C DEDD2 Missense_Mutation p.D265E 0.13 deleterious(0) probably_damaging(0.952) TCGA-5M-AAT6-01 19 42818488 42818488 G A TMEM145 Missense_Mutation p.R62H 0.11 deleterious(0.02) possibly_damaging(0.54) TCGA-5M-AAT6-01 19 42865016 42865016 G - MEGF8 Frame_Shift_Del p.G1794Efs*10 0.13 TCGA-5M-AAT6-01 19 42906918 42906918 G A LIPE Silent p.G936G 0.11 TCGA-5M-AAT6-01 19 43672017 43672017 C T PSG5 Intron 0.11 TCGA-5M-AAT6-01 19 43708378 43708378 C T PSG4 Silent p.P30P 0.18 TCGA-5M-AAT6-01 19 44096392 44096392 C T IRGQ Missense_Mutation p.R553H 0.16 deleterious(0.01) possibly_damaging(0.799) TCGA-5M-AAT6-01 19 44103288 44103288 C T ZNF576 Missense_Mutation p.R131C 0.16 deleterious(0) probably_damaging(0.993) TCGA-5M-AAT6-01 19 44662115 44662115 A - ZNF234 Frame_Shift_Del p.K650Nfs*19 0.12 TCGA-5M-AAT6-01 19 45150802 45150802 G A PVR Silent p.P129P 0.08 TCGA-5M-AAT6-01 19 45153220 45153220 G A PVR Silent p.T189T 0.19 TCGA-5M-AAT6-01 19 45315763 45315764 - A BCAM Frame_Shift_Ins p.N155Kfs*76 0.08 TCGA-5M-AAT6-01 19 45375268 45375268 C A PVRL2 Missense_Mutation p.L213M 0.11 tolerated(0.06) benign(0.188) TCGA-5M-AAT6-01 19 45381496 45381496 G A PVRL2 Intron 0.11 TCGA-5M-AAT6-01 19 45528646 45528646 G A RELB Missense_Mutation p.R241Q 0.18 tolerated(0.31) benign(0.018) TCGA-5M-AAT6-01 19 45559736 45559736 C A CLASRP Silent p.I136I 0.24 TCGA-5M-AAT6-01 19 45801032 45801032 G A MARK4 Missense_Mutation p.R566H 0.12 deleterious(0) possibly_damaging(0.84) TCGA-5M-AAT6-01 19 46832661 46832661 C - HIF3A Frame_Shift_Del p.R548Gfs*2 0.13 TCGA-5M-AAT6-01 19 46973795 46973795 G A PNMAL1 Silent p.A166A 0.22 TCGA-5M-AAT6-01 19 4704312 4704312 G A DPP9 Missense_Mutation p.T144M 0.13 tolerated(0.07) probably_damaging(0.953) TCGA-5M-AAT6-01 19 47569868 47569868 G A ZC3H4 Silent p.N1219N 0.20 TCGA-5M-AAT6-01 19 47615731 47615731 G A ZC3H4 Silent p.R37R 0.10 TCGA-5M-AAT6-01 19 47658416 47658416 G A SAE1 Silent p.G191G 0.18 TCGA-5M-AAT6-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.12 TCGA-5M-AAT6-01 19 48182844 48182844 C T GLTSCR1 Silent p.G139G 0.16 TCGA-5M-AAT6-01 19 48183864 48183864 G A GLTSCR1 Silent p.A479A 0.14 TCGA-5M-AAT6-01 19 4859923 4859923 G A PLIN3 Silent p.C60C 0.13 TCGA-5M-AAT6-01 19 48660313 48660313 G A LIG1 Missense_Mutation p.P110S 0.16 tolerated(0.16) benign(0.011) TCGA-5M-AAT6-01 19 48894662 48894662 G - KDELR1 5'UTR 0.19 TCGA-5M-AAT6-01 19 48954339 48954339 C T GRWD1 Missense_Mutation p.R292W 0.14 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 19 48965678 48965678 C T KCNJ14 Missense_Mutation p.R233C 0.11 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 19 49001024 49001024 G A LMTK3 Missense_Mutation p.A1130V 0.17 unknown(0) TCGA-5M-AAT6-01 19 49110447 49110447 G A SPACA4 Missense_Mutation p.C71Y 0.15 tolerated(0.13) probably_damaging(0.998) TCGA-5M-AAT6-01 19 49129502 49129502 A G SPHK2 Missense_Mutation p.T132A 0.10 tolerated(0.75) benign(0.001) TCGA-5M-AAT6-01 19 49259580 49259580 C T FGF21 Silent p.H29H 0.19 TCGA-5M-AAT6-01 19 4930733 4930733 T C MIR4747 5'Flank 0.16 TCGA-5M-AAT6-01 19 4932803 4932803 G A MIR4747 3'Flank 0.14 TCGA-5M-AAT6-01 19 49416351 49416351 G T NUCB1 Silent p.R188R 0.14 TCGA-5M-AAT6-01 19 49538903 49538903 G - CGB1 Frame_Shift_Del p.S145Afs*? 0.19 TCGA-5M-AAT6-01 19 50100105 50100105 C T PRR12 Missense_Mutation p.P838L 0.12 possibly_damaging(0.715) TCGA-5M-AAT6-01 19 50101104 50101104 G - PRR12 Frame_Shift_Del p.R1173Gfs*50 0.11 TCGA-5M-AAT6-01 19 50365045 50365045 C T PNKP Missense_Mutation p.A428T 0.10 tolerated(0.32) benign(0.017) TCGA-5M-AAT6-01 19 50386061 50386061 C T TBC1D17 Missense_Mutation p.P280L 0.14 deleterious(0) possibly_damaging(0.721) TCGA-5M-AAT6-01 19 504939 504939 G A MADCAM1 Missense_Mutation p.G375S 0.10 tolerated_low_confidence(0.06) benign(0) TCGA-5M-AAT6-01 19 50753892 50753892 C T MYH14 Missense_Mutation p.P593S 0.15 tolerated(0.1) possibly_damaging(0.779) TCGA-5M-AAT6-01 19 50826265 50826265 C A KCNC3 Missense_Mutation p.A649S 0.17 deleterious_low_confidence(0.03) benign(0.364) TCGA-5M-AAT6-01 19 50917041 50917041 G A POLD1 Missense_Mutation p.V765M 0.24 deleterious(0.01) probably_damaging(0.911) TCGA-5M-AAT6-01 19 51021899 51021899 C T LRRC4B Silent p.S357S 0.18 TCGA-5M-AAT6-01 19 51165516 51165516 C - SHANK1 Frame_Shift_Del p.L2065Sfs*68 0.13 TCGA-5M-AAT6-01 19 51499372 51499372 A G KLK8 Silent p.Y287Y 0.19 TCGA-5M-AAT6-01 19 51512810 51512810 T C KLK9 5'UTR 0.10 TCGA-5M-AAT6-01 19 51582812 51582812 G A KLK14 Silent p.P136P 0.10 TCGA-5M-AAT6-01 19 51628206 51628206 C T SIGLEC9 5'UTR 0.20 TCGA-5M-AAT6-01 19 51841206 51841206 G A VSIG10L Silent p.G662G 0.11 TCGA-5M-AAT6-01 19 51920108 51920108 C T SIGLEC10 Missense_Mutation p.C173Y 0.11 deleterious(0) probably_damaging(0.979) TCGA-5M-AAT6-01 19 5214592 5214592 G A PTPRS Missense_Mutation p.R1492W 0.09 deleterious(0) probably_damaging(0.991) TCGA-5M-AAT6-01 19 52394633 52394633 G A ZNF649 Silent p.H252H 0.15 TCGA-5M-AAT6-01 19 52888438 52888438 A - ZNF880 Frame_Shift_Del p.K537Nfs*60 0.13 TCGA-5M-AAT6-01 19 52942093 52942093 T C ZNF534 Silent p.H473H 0.23 TCGA-5M-AAT6-01 19 53086002 53086002 A - ZNF701 Frame_Shift_Del p.K298Nfs*4 0.10 TCGA-5M-AAT6-01 19 53117891 53117891 A C ZNF83 5'UTR 0.11 TCGA-5M-AAT6-01 19 53762527 53762527 G T VN1R2 Missense_Mutation p.R300M 0.15 deleterious(0.01) probably_damaging(0.911) TCGA-5M-AAT6-01 19 541646 541646 C - CDC34 3'UTR 0.12 TCGA-5M-AAT6-01 19 54312862 54312862 G A NLRP12 Missense_Mutation p.A684V 0.16 tolerated(0.48) benign(0.003) TCGA-5M-AAT6-01 19 54379345 54379345 T - MYADM 3'UTR 0.09 TCGA-5M-AAT6-01 19 54403491 54403491 G A PRKCG Missense_Mutation p.R429H 0.17 tolerated(0.09) possibly_damaging(0.745) TCGA-5M-AAT6-01 19 54573367 54573367 G A TARM1 Nonsense_Mutation p.R236* 0.12 TCGA-5M-AAT6-01 19 54965715 54965715 C T LENG8 Missense_Mutation p.T178M 0.15 deleterious_low_confidence(0.04) benign(0.42) TCGA-5M-AAT6-01 19 55512332 55512332 A G NLRP2 3'UTR 0.09 TCGA-5M-AAT6-01 19 55539039 55539039 C T GP6 Missense_Mutation p.A173T 0.21 tolerated_low_confidence(0.06) benign(0.046) TCGA-5M-AAT6-01 19 55711814 55711814 G T PTPRH Missense_Mutation p.L404I 0.16 possibly_damaging(0.893) TCGA-5M-AAT6-01 19 55855097 55855097 C T SUV420H2 Missense_Mutation p.R146W 0.17 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 19 55865830 55865830 G A COX6B2 Silent p.D20D 0.12 TCGA-5M-AAT6-01 19 55877128 55877128 C A IL11 3'UTR 0.20 TCGA-5M-AAT6-01 19 5590306 5590306 C - SAFB2 Frame_Shift_Del p.L837Cfs*18 0.15 TCGA-5M-AAT6-01 19 56041233 56041233 C T SBK2 Missense_Mutation p.R305Q 0.18 tolerated(0.59) benign(0.007) TCGA-5M-AAT6-01 19 56113688 56113688 G - ZNF524 Frame_Shift_Del p.V72* 0.15 TCGA-5M-AAT6-01 19 57286450 57286450 G A ZIM2 Missense_Mutation p.A397V 0.14 tolerated(0.06) benign(0.048) TCGA-5M-AAT6-01 19 57335036 57335036 T C PEG3 Missense_Mutation p.S136G 0.16 tolerated(0.07) benign(0.036) TCGA-5M-AAT6-01 19 58118458 58118458 A G ZNF530 Missense_Mutation p.D522G 0.05 tolerated(0.31) benign(0.002) TCGA-5M-AAT6-01 19 58132568 58132568 G A ZNF134 Missense_Mutation p.A361T 0.14 tolerated(0.28) probably_damaging(0.999) TCGA-5M-AAT6-01 19 58287988 58287988 C T ZNF586 Silent p.C38C 0.14 TCGA-5M-AAT6-01 19 58370684 58370684 G A ZNF587 Missense_Mutation p.G302R 0.20 deleterious(0.04) benign(0.042) TCGA-5M-AAT6-01 19 58489874 58489874 A G ZNF606 Missense_Mutation p.V725A 0.15 tolerated(0.17) possibly_damaging(0.759) TCGA-5M-AAT6-01 19 58879111 58879111 G A ZNF837 Missense_Mutation p.A530V 0.27 tolerated(0.27) benign(0.021) TCGA-5M-AAT6-01 19 59028923 59028923 G A ZBTB45 Missense_Mutation p.R40C 0.16 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 19 5915233 5915233 T G CAPS Missense_Mutation p.V157G 0.11 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 19 6361607 6361607 G - CLPP Frame_Shift_Del p.A10Pfs*117 0.09 TCGA-5M-AAT6-01 19 6496180 6496180 T C TUBB4A Silent p.A110A 0.11 TCGA-5M-AAT6-01 19 7117024 7117024 C T INSR 3'UTR 0.12 TCGA-5M-AAT6-01 19 7524801 7524801 G C ARHGEF18 Missense_Mutation p.E603D 0.14 deleterious(0.01) benign(0.005) TCGA-5M-AAT6-01 19 7569205 7569205 C T C19orf45 Silent p.S230S 0.09 TCGA-5M-AAT6-01 19 7682927 7682927 G A CAMSAP3 Missense_Mutation p.G1272D 0.21 tolerated(0.07) unknown(0) TCGA-5M-AAT6-01 19 7976149 7976149 C - MAP2K7 Frame_Shift_Del p.P292Qfs*119 0.13 TCGA-5M-AAT6-01 19 8154510 8154510 C T FBN3 Missense_Mutation p.V2099I 0.12 tolerated(0.4) benign(0.005) TCGA-5M-AAT6-01 19 8174519 8174519 G A FBN3 Silent p.C1484C 0.15 TCGA-5M-AAT6-01 19 8212034 8212034 G A FBN3 Silent p.C68C 0.17 TCGA-5M-AAT6-01 19 8563508 8563508 G A PRAM1 Missense_Mutation p.A395V 0.16 tolerated(0.12) benign(0.013) TCGA-5M-AAT6-01 19 8604845 8604845 C T MYO1F Missense_Mutation p.G560S 0.13 tolerated(0.39) benign(0.368) TCGA-5M-AAT6-01 19 9049205 9049205 C T MUC16 Missense_Mutation p.R10809Q 0.12 benign(0.017) TCGA-5M-AAT6-01 19 9090047 9090047 G C MUC16 Missense_Mutation p.L590V 0.16 unknown(0) TCGA-5M-AAT6-01 19 9267424 9267424 G T ZNF317 Missense_Mutation p.Q54H 0.10 deleterious(0) possibly_damaging(0.448) TCGA-5M-AAT6-01 1 100327251 100327251 A G AGL Missense_Mutation p.Q92R 0.20 tolerated(0.49) benign(0.002) TCGA-5M-AAT6-01 1 10228236 10228236 C T UBE4B Missense_Mutation p.R1081C 0.19 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 1 10438671 10438671 A G KIF1B 3'Flank 0.26 TCGA-5M-AAT6-01 1 109461236 109461236 T C GPSM2 Missense_Mutation p.V422A 0.13 tolerated(0.73) benign(0.01) TCGA-5M-AAT6-01 1 109731797 109731797 C T KIAA1324 Silent p.F443F 0.11 TCGA-5M-AAT6-01 1 11017119 11017119 C T C1orf127 Missense_Mutation p.G247S 0.18 tolerated(0.14) benign(0.01) TCGA-5M-AAT6-01 1 110559004 110559004 C T AHCYL1 Missense_Mutation p.P274L 0.13 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 1 111061063 111061063 T C KCNA10 Missense_Mutation p.E116G 0.12 tolerated(0.29) benign(0.061) TCGA-5M-AAT6-01 1 111435069 111435069 T - CD53 Frame_Shift_Del p.F56Lfs*10 0.13 TCGA-5M-AAT6-01 1 111667375 111667375 C T DRAM2 Missense_Mutation p.A110T 0.06 deleterious(0.04) probably_damaging(1) TCGA-5M-AAT6-01 1 112524308 112524308 C T KCND3 Silent p.S347S 0.16 TCGA-5M-AAT6-01 1 114454740 114454740 T C DCLRE1B Missense_Mutation p.V509A 0.12 tolerated_low_confidence(0.05) benign(0.002) TCGA-5M-AAT6-01 1 114506068 114506068 G A HIPK1 Silent p.P721P 0.16 TCGA-5M-AAT6-01 1 114940353 114940353 C T TRIM33 Missense_Mutation p.V1101I 0.13 tolerated(0.45) benign(0.002) TCGA-5M-AAT6-01 1 115276434 115276434 T C CSDE1 Silent p.T298T 0.11 TCGA-5M-AAT6-01 1 11580875 11580875 G A PTCHD2 Missense_Mutation p.A778T 0.12 deleterious(0.01) probably_damaging(1) TCGA-5M-AAT6-01 1 117156665 117156665 C T IGSF3 Missense_Mutation p.R185Q 0.15 tolerated(0.2) possibly_damaging(0.669) TCGA-5M-AAT6-01 1 117158873 117158873 A G IGSF3 Missense_Mutation p.Y84H 0.11 deleterious(0) possibly_damaging(0.888) TCGA-5M-AAT6-01 1 118166213 118166213 C T FAM46C Silent p.G241G 0.14 TCGA-5M-AAT6-01 1 118167012 118167012 G A FAM46C 3'UTR 0.14 TCGA-5M-AAT6-01 1 118168911 118168911 T - FAM46C 3'UTR 0.16 TCGA-5M-AAT6-01 1 118439493 118439493 T C GDAP2 Silent p.Q305Q 0.07 TCGA-5M-AAT6-01 1 118571008 118571010 CTT - SPAG17 In_Frame_Del p.E1206del 0.11 TCGA-5M-AAT6-01 1 11887175 11887175 C T CLCN6 Missense_Mutation p.A246V 0.21 deleterious(0.03) probably_damaging(1) TCGA-5M-AAT6-01 1 11889262 11889262 G A CLCN6 Silent p.E377E 0.12 TCGA-5M-AAT6-01 1 11897464 11897464 C T CLCN6 Missense_Mutation p.R735W 0.11 deleterious(0.01) possibly_damaging(0.908) TCGA-5M-AAT6-01 1 11918905 11918905 T C NPPB 5'UTR 0.15 TCGA-5M-AAT6-01 1 12024354 12024354 G A PLOD1 Missense_Mutation p.R442H 0.15 deleterious(0) possibly_damaging(0.721) TCGA-5M-AAT6-01 1 120471692 120471692 C T NOTCH2 Missense_Mutation p.E1267K 0.13 deleterious(0) probably_damaging(0.994) TCGA-5M-AAT6-01 1 120471768 120471768 G A NOTCH2 Silent p.C1241C 0.05 TCGA-5M-AAT6-01 1 12081745 12081745 G A MIIP 5'UTR 0.11 TCGA-5M-AAT6-01 1 12186255 12186255 A G TNFRSF8 Missense_Mutation p.Y424C 0.15 deleterious(0.02) probably_damaging(0.969) TCGA-5M-AAT6-01 1 12638758 12638758 C T DHRS3 Missense_Mutation p.G229D 0.10 deleterious(0) possibly_damaging(0.83) TCGA-5M-AAT6-01 1 1266836 1266836 G - TAS1R3 Frame_Shift_Del p.L40Cfs*37 0.15 TCGA-5M-AAT6-01 1 1273917 1273917 C T DVL1 Missense_Mutation p.A417T 0.13 deleterious(0.01) possibly_damaging(0.698) TCGA-5M-AAT6-01 1 1326177 1326177 G A CCNL2 Missense_Mutation p.A243V 0.14 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 1 13695841 13695841 C T PRAMEF19 Missense_Mutation p.R375H 0.13 benign(0.002) TCGA-5M-AAT6-01 1 144879311 144879311 C T PDE4DIP Missense_Mutation p.R1380Q 0.10 deleterious(0) probably_damaging(0.981) TCGA-5M-AAT6-01 1 145290503 145290503 C T NBPF10 5'Flank 0.03 TCGA-5M-AAT6-01 1 145515697 145515697 T C PEX11B 5'Flank 0.16 TCGA-5M-AAT6-01 1 145528640 145528640 A G ITGA10 Missense_Mutation p.D146G 0.11 tolerated(0.06) benign(0.037) TCGA-5M-AAT6-01 1 145532567 145532567 G T ITGA10 Missense_Mutation p.E340D 0.13 deleterious(0) probably_damaging(0.987) TCGA-5M-AAT6-01 1 145537443 145537443 G A ITGA10 Missense_Mutation p.R818Q 0.18 tolerated(0.09) benign(0.056) TCGA-5M-AAT6-01 1 145704302 145704302 G A CD160 Nonsense_Mutation p.R39* 0.12 TCGA-5M-AAT6-01 1 1460619 1460619 G A ATAD3A Splice_Site p.X453_splice 0.13 TCGA-5M-AAT6-01 1 150484246 150484246 T C ECM1 Missense_Mutation p.L368P 0.11 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 1 151011028 151011028 A C BNIPL Missense_Mutation p.K62N 0.11 tolerated(0.47) benign(0.001) TCGA-5M-AAT6-01 1 151089920 151089920 A G GABPB2 Silent p.E325E 0.17 TCGA-5M-AAT6-01 1 151107719 151107719 A G SEMA6C Silent p.G500G 0.14 TCGA-5M-AAT6-01 1 151239683 151239683 A G PSMD4 Missense_Mutation p.E333G 0.14 tolerated(0.15) benign(0.005) TCGA-5M-AAT6-01 1 151263009 151263009 G A ZNF687 Missense_Mutation p.R1060Q 0.21 tolerated(1) benign(0.005) TCGA-5M-AAT6-01 1 151400475 151400475 A G POGZ Missense_Mutation p.F301S 0.17 tolerated(0.26) probably_damaging(0.942) TCGA-5M-AAT6-01 1 151509274 151509274 C T CGN Silent p.D1125D 0.20 TCGA-5M-AAT6-01 1 151789160 151789160 G A RORC Missense_Mutation p.A93V 0.21 deleterious(0) probably_damaging(0.966) TCGA-5M-AAT6-01 1 151810461 151810461 C T C2CD4D Silent p.P335P 0.14 TCGA-5M-AAT6-01 1 151994944 151994944 C T NBPF18P RNA 0.19 TCGA-5M-AAT6-01 1 152058229 152058229 T C TCHHL1 Silent p.P643P 0.09 TCGA-5M-AAT6-01 1 153303380 153303380 G T PGLYRP4 Missense_Mutation p.L329M 0.09 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 1 15392298 15392298 C T KAZN Intron 0.12 TCGA-5M-AAT6-01 1 153946480 153946480 T C CREB3L4 Missense_Mutation p.M376T 0.18 tolerated(0.7) benign(0.001) TCGA-5M-AAT6-01 1 154091144 154091144 T C NUP210L Intron 0.16 TCGA-5M-AAT6-01 1 154557386 154557386 C T ADAR Missense_Mutation p.E1193K 0.17 deleterious(0.03) benign(0.064) TCGA-5M-AAT6-01 1 155150637 155150637 C T TRIM46 Silent p.L357L 0.14 TCGA-5M-AAT6-01 1 155290585 155290585 C A RUSC1 5'Flank 0.14 TCGA-5M-AAT6-01 1 155408855 155408855 G A ASH1L Silent p.N1697N 0.14 TCGA-5M-AAT6-01 1 155851326 155851326 G A SYT11 3'UTR 0.13 TCGA-5M-AAT6-01 1 156144709 156144709 A G SEMA4A Missense_Mutation p.N471S 0.05 deleterious(0.05) benign(0.086) TCGA-5M-AAT6-01 1 156169888 156169888 C A SLC25A44 Missense_Mutation p.L84I 0.14 tolerated(0.92) benign(0.083) TCGA-5M-AAT6-01 1 156177791 156177791 G A SLC25A44 Missense_Mutation p.R247Q 0.14 deleterious(0) possibly_damaging(0.893) TCGA-5M-AAT6-01 1 156849125 156849125 A G NTRK1 Missense_Mutation p.R673G 0.12 deleterious(0) possibly_damaging(0.817) TCGA-5M-AAT6-01 1 158150854 158150854 G A CD1D 5'UTR 0.17 TCGA-5M-AAT6-01 1 158623119 158623119 G A SPTA1 Missense_Mutation p.R1045W 0.08 deleterious(0.02) benign(0.035) TCGA-5M-AAT6-01 1 16063077 16063077 C T SLC25A34 Missense_Mutation p.R33W 0.19 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 1 161017913 161017913 C T ARHGAP30 Silent p.P966P 0.15 TCGA-5M-AAT6-01 1 161192291 161192291 C A APOA2 Missense_Mutation p.K69N 0.14 tolerated(0.27) benign(0.245) TCGA-5M-AAT6-01 1 161993229 161993229 C T OLFML2B 5'UTR 0.12 TCGA-5M-AAT6-01 1 16342044 16342044 G - HSPB7 3'UTR 0.13 TCGA-5M-AAT6-01 1 16375022 16375022 G A CLCNKB Missense_Mutation p.M200I 0.17 tolerated(0.12) possibly_damaging(0.786) TCGA-5M-AAT6-01 1 16725977 16725977 A C SPATA21 Missense_Mutation p.I405S 0.19 deleterious(0.01) possibly_damaging(0.613) TCGA-5M-AAT6-01 1 167367318 167367318 G A POU2F1 Missense_Mutation p.R406H 0.11 deleterious(0) unknown(0) TCGA-5M-AAT6-01 1 168204376 168204376 C T SFT2D2 Nonsense_Mutation p.R92* 0.19 TCGA-5M-AAT6-01 1 1688172 1688172 G A NADK Intron 0.16 TCGA-5M-AAT6-01 1 169564099 169564099 T C SELP Silent p.E706E 0.07 TCGA-5M-AAT6-01 1 170961361 170961361 T C MROH9 Missense_Mutation p.V362A 0.05 deleterious(0.01) probably_damaging(0.946) TCGA-5M-AAT6-01 1 171086558 171086558 C T FMO3 Silent p.I525I 0.13 TCGA-5M-AAT6-01 1 171765697 171765698 - C METTL13 Frame_Shift_Ins p.L636Pfs*8 0.10 TCGA-5M-AAT6-01 1 171958256 171958256 C T DNM3 Missense_Mutation p.A186V 0.15 deleterious(0) probably_damaging(0.943) TCGA-5M-AAT6-01 1 17257012 17257012 C T CROCC Nonsense_Mutation p.R258* 0.22 TCGA-5M-AAT6-01 1 17265482 17265482 C T CROCC Missense_Mutation p.R485W 0.18 probably_damaging(0.954) TCGA-5M-AAT6-01 1 17281949 17281949 G A CROCC Missense_Mutation p.R1203H 0.26 probably_damaging(1) TCGA-5M-AAT6-01 1 17322512 17322512 T C ATP13A2 Missense_Mutation p.I501V 0.14 deleterious(0.01) possibly_damaging(0.874) TCGA-5M-AAT6-01 1 173703286 173703286 T C KLHL20 Missense_Mutation p.I153T 0.18 deleterious(0.02) possibly_damaging(0.742) TCGA-5M-AAT6-01 1 17411165 17411165 G A PADI2 Silent p.T289T 0.20 TCGA-5M-AAT6-01 1 17739616 17739616 T - RCC2 Frame_Shift_Del p.A423Qfs*56 0.09 TCGA-5M-AAT6-01 1 178514795 178514795 C T C1ORF220 Nonsense_Mutation p.R61* 0.13 TCGA-5M-AAT6-01 1 178834535 178834535 A G ANGPTL1 Missense_Mutation p.M126T 0.11 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 1 180904491 180904491 C T KIAA1614 Silent p.A482A 0.19 TCGA-5M-AAT6-01 1 182025773 182025773 G A ZNF648 Missense_Mutation p.A458V 0.15 tolerated(0.07) possibly_damaging(0.791) TCGA-5M-AAT6-01 1 183099502 183099502 C T LAMC1 Missense_Mutation p.R1102C 0.13 deleterious(0) probably_damaging(0.98) TCGA-5M-AAT6-01 1 183511235 183511235 A G SMG7 Silent p.V480V 0.12 TCGA-5M-AAT6-01 1 183871726 183871728 AGG - RGL1 In_Frame_Del p.R485del 0.08 TCGA-5M-AAT6-01 1 183933300 183933300 A - COLGALT2 Intron 0.08 TCGA-5M-AAT6-01 1 185704180 185704180 G A HMCN1 Splice_Site p.X90_splice 0.11 TCGA-5M-AAT6-01 1 186158813 186158813 A G HMCN1 Missense_Mutation p.M5571V 0.12 benign(0.354) TCGA-5M-AAT6-01 1 19166948 19166948 C T TAS1R2 Silent p.Q555Q 0.08 TCGA-5M-AAT6-01 1 193045771 193045771 A - TROVE2 Frame_Shift_Del p.K316Rfs*10 0.13 TCGA-5M-AAT6-01 1 19585479 19585479 G A MRTO4 3'UTR 0.23 TCGA-5M-AAT6-01 1 196648762 196648762 G A CFH Missense_Mutation p.C210Y 0.10 deleterious(0) probably_damaging(0.944) TCGA-5M-AAT6-01 1 197056045 197056045 C T ASPM Missense_Mutation p.A3407T 0.15 tolerated(0.05) possibly_damaging(0.493) TCGA-5M-AAT6-01 1 19746165 19746165 A G CAPZB Missense_Mutation p.L28P 0.16 deleterious(0) probably_damaging(0.921) TCGA-5M-AAT6-01 1 200870250 200870250 C T C1orf106 Silent p.S161S 0.11 TCGA-5M-AAT6-01 1 202568382 202568382 C T SYT2 Silent p.E339E 0.15 TCGA-5M-AAT6-01 1 202705411 202705411 T C KDM5B Missense_Mutation p.E1065G 0.14 tolerated(0.18) possibly_damaging(0.685) TCGA-5M-AAT6-01 1 202710708 202710708 C T KDM5B Missense_Mutation p.R911H 0.14 deleterious(0) probably_damaging(0.983) TCGA-5M-AAT6-01 1 202864827 202864827 G A KLHL12 Missense_Mutation p.R320C 0.16 tolerated(0.05) probably_damaging(1) TCGA-5M-AAT6-01 1 203025986 203025986 G A PPFIA4 Missense_Mutation p.R266H 0.18 deleterious(0) possibly_damaging(0.557) TCGA-5M-AAT6-01 1 203143599 203143599 G A MYBPH Missense_Mutation p.P156L 0.16 deleterious(0) probably_damaging(0.909) TCGA-5M-AAT6-01 1 203678667 203678667 G A ATP2B4 Missense_Mutation p.R599H 0.15 tolerated(0.07) probably_damaging(0.979) TCGA-5M-AAT6-01 1 204091508 204091508 C - SOX13 Frame_Shift_Del p.P337Rfs*69 0.13 TCGA-5M-AAT6-01 1 205033536 205033536 C T CNTN2 Missense_Mutation p.R443W 0.13 deleterious(0) probably_damaging(0.993) TCGA-5M-AAT6-01 1 205241077 205241077 C T TMCC2 Missense_Mutation p.A652V 0.18 deleterious(0) probably_damaging(0.934) TCGA-5M-AAT6-01 1 205495954 205495954 C T CDK18 Missense_Mutation p.H270Y 0.16 tolerated(0.08) benign(0.059) TCGA-5M-AAT6-01 1 205549020 205549020 C T MFSD4 Silent p.T124T 0.24 TCGA-5M-AAT6-01 1 205549066 205549066 G A MFSD4 Missense_Mutation p.V140I 0.30 tolerated(0.79) benign(0.03) TCGA-5M-AAT6-01 1 205628463 205628463 T C SLC45A3 Missense_Mutation p.T521A 0.13 deleterious(0.02) probably_damaging(0.935) TCGA-5M-AAT6-01 1 205632053 205632053 G A SLC45A3 Missense_Mutation p.T289M 0.12 tolerated(0.83) benign(0.091) TCGA-5M-AAT6-01 1 20645115 20645115 G A VWA5B1 Missense_Mutation p.D248N 0.11 deleterious(0) probably_damaging(0.97) TCGA-5M-AAT6-01 1 206646552 206646552 A G IKBKE 5'UTR 0.11 TCGA-5M-AAT6-01 1 207108950 207108950 C T PIGR Missense_Mutation p.G420D 0.16 tolerated(0.14) probably_damaging(0.932) TCGA-5M-AAT6-01 1 207850773 207850773 C A CR1L Missense_Mutation p.P46H 0.14 deleterious(0) benign(0.375) TCGA-5M-AAT6-01 1 208062906 208062906 C T CD34 Missense_Mutation p.A220T 0.16 tolerated(0.1) probably_damaging(0.996) TCGA-5M-AAT6-01 1 208270076 208270076 T C PLXNA2 Silent p.Q628Q 0.10 TCGA-5M-AAT6-01 1 21016704 21016704 T A KIF17 Missense_Mutation p.E453V 0.17 deleterious(0) benign(0.365) TCGA-5M-AAT6-01 1 21100060 21100060 T - HP1BP3 Frame_Shift_Del p.T132Qfs*13 0.38 TCGA-5M-AAT6-01 1 211534106 211534106 T C TRAF5 Silent p.I202I 0.23 TCGA-5M-AAT6-01 1 214816573 214816573 C T CENPF Missense_Mutation p.T1631M 0.09 probably_damaging(0.942) TCGA-5M-AAT6-01 1 215807955 215807955 G A USH2A Missense_Mutation p.A5048V 0.15 benign(0.053) TCGA-5M-AAT6-01 1 216246302 216246302 T C USH2A Missense_Mutation p.Y1929C 0.11 probably_damaging(1) TCGA-5M-AAT6-01 1 22181215 22181215 C T HSPG2 Silent p.S2059S 0.20 TCGA-5M-AAT6-01 1 22207220 22207220 G A HSPG2 Missense_Mutation p.R643C 0.14 probably_damaging(0.953) TCGA-5M-AAT6-01 1 223176990 223176990 G A DISP1 Missense_Mutation p.E751K 0.16 tolerated(0.2) possibly_damaging(0.861) TCGA-5M-AAT6-01 1 223465881 223465881 G A SUSD4 Silent p.D87D 0.15 TCGA-5M-AAT6-01 1 223940633 223940633 C T CAPN2 Silent p.T370T 0.13 TCGA-5M-AAT6-01 1 226027607 226027607 G A EPHX1 Missense_Mutation p.R267H 0.12 tolerated(0.27) benign(0.005) TCGA-5M-AAT6-01 1 226050045 226050045 C T TMEM63A Missense_Mutation p.A320T 0.18 deleterious(0.02) benign(0.397) TCGA-5M-AAT6-01 1 226074777 226074777 A G LEFTY1 Missense_Mutation p.C251R 0.15 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 1 226076822 226076822 A G LEFTY1 5'UTR 0.16 TCGA-5M-AAT6-01 1 226180122 226180122 C T SDE2 Missense_Mutation p.R166H 0.24 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 1 226420220 226420220 A G LIN9 Silent p.N553N 0.10 TCGA-5M-AAT6-01 1 227077805 227077805 A G PSEN2 Missense_Mutation p.E286G 0.10 deleterious(0) probably_damaging(0.99) TCGA-5M-AAT6-01 1 227172341 227172341 C - ADCK3 Frame_Shift_Del p.Q499Sfs*44 0.13 TCGA-5M-AAT6-01 1 227920091 227920091 T C JMJD4 3'UTR 0.10 TCGA-5M-AAT6-01 1 227921579 227921579 G A SNAP47 5'Flank 0.18 TCGA-5M-AAT6-01 1 228347034 228347034 G - GJC2 3'UTR 0.10 TCGA-5M-AAT6-01 1 22846745 22846745 G A ZBTB40 Missense_Mutation p.G1009R 0.19 tolerated(0.07) benign(0) TCGA-5M-AAT6-01 1 228481238 228481238 C T OBSCN Silent p.R4113R 0.19 TCGA-5M-AAT6-01 1 228582501 228582501 G T TRIM11 Missense_Mutation p.L438M 0.19 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 1 229772060 229772060 G A URB2 Missense_Mutation p.R567Q 0.17 tolerated(0.13) possibly_damaging(0.86) TCGA-5M-AAT6-01 1 230927667 230927667 T C CAPN9 Missense_Mutation p.L572P 0.18 deleterious(0.02) benign(0.049) TCGA-5M-AAT6-01 1 231339738 231339738 G T TRIM67 Missense_Mutation p.G554C 0.17 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 1 231483640 231483640 G A SPRTN Missense_Mutation p.R140H 0.15 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 1 232538164 232538164 G A SIPA1L2 Nonsense_Mutation p.R1666* 0.17 TCGA-5M-AAT6-01 1 232619587 232619587 T C SIPA1L2 Silent p.R644R 0.11 TCGA-5M-AAT6-01 1 2334709 2334709 A T RER1 3'UTR 0.23 TCGA-5M-AAT6-01 1 236156964 236156964 C T NID1 Silent p.R912R 0.12 TCGA-5M-AAT6-01 1 236721563 236721563 C A HEATR1 Missense_Mutation p.E1726D 0.21 tolerated(0.1) benign(0.001) TCGA-5M-AAT6-01 1 237755129 237755129 T C RYR2 Silent p.Y1417Y 0.15 TCGA-5M-AAT6-01 1 238053923 238053923 G A ZP4 Missense_Mutation p.R5W 0.14 tolerated(0.19) benign(0.12) TCGA-5M-AAT6-01 1 240256017 240256017 T C FMN2 Missense_Mutation p.I203T 0.17 unknown(0) TCGA-5M-AAT6-01 1 245862225 245862225 G A KIF26B Missense_Mutation p.E2022K 0.13 deleterious(0) unknown(0) TCGA-5M-AAT6-01 1 24684960 24684960 C T STPG1 3'UTR 0.15 TCGA-5M-AAT6-01 1 248366779 248366779 G A OR2M3 Missense_Mutation p.S137N 0.09 tolerated(0.73) benign(0.002) TCGA-5M-AAT6-01 1 248366780 248366780 C T OR2M3 Silent p.S137S 0.08 TCGA-5M-AAT6-01 1 248403160 248403160 A G OR2M4 Silent p.L310L 0.12 TCGA-5M-AAT6-01 1 248637239 248637239 C T OR2T3 Silent p.D196D 0.07 TCGA-5M-AAT6-01 1 24998908 24998908 A - SRRM1 3'UTR 0.09 TCGA-5M-AAT6-01 1 24999013 24999013 A - SRRM1 3'UTR 0.35 TCGA-5M-AAT6-01 1 2535717 2535717 G A MMEL1 Missense_Mutation p.R274W 0.13 deleterious(0.02) probably_damaging(1) TCGA-5M-AAT6-01 1 26161511 26161511 A G AUNIP Silent p.G349G 0.15 TCGA-5M-AAT6-01 1 26694193 26694193 C T ZNF683 Silent p.R70R 0.13 TCGA-5M-AAT6-01 1 27680355 27680356 CT - SYTL1 3'UTR 0.12 TCGA-5M-AAT6-01 1 27687733 27687733 G A MAP3K6 Missense_Mutation p.R583C 0.23 tolerated(0.16) benign(0.001) TCGA-5M-AAT6-01 1 27720310 27720310 G - GPR3 Frame_Shift_Del p.G4Vfs*16 0.17 TCGA-5M-AAT6-01 1 29063761 29063761 G A YTHDF2 Intron 0.15 TCGA-5M-AAT6-01 1 29391605 29391605 C T EPB41 Missense_Mutation p.R707C 0.14 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 1 29438885 29438885 A - EPB41 Frame_Shift_Del p.G809Vfs*13 0.09 TCGA-5M-AAT6-01 1 29609329 29609329 G A PTPRU Silent p.A670A 0.13 TCGA-5M-AAT6-01 1 32208595 32208595 C T BAI2 Missense_Mutation p.V366M 0.16 deleterious(0.02) benign(0.27) TCGA-5M-AAT6-01 1 32479904 32479904 A G KHDRBS1 Missense_Mutation p.Y103C 0.22 tolerated(0.05) possibly_damaging(0.491) TCGA-5M-AAT6-01 1 33745853 33745853 T C ZNF362 Missense_Mutation p.S160P 0.14 tolerated(0.16) possibly_damaging(0.69) TCGA-5M-AAT6-01 1 3388196 3388196 C T ARHGEF16 Intron 0.13 TCGA-5M-AAT6-01 1 33945237 33945237 T C ZSCAN20 Silent p.P116P 0.14 TCGA-5M-AAT6-01 1 35250866 35250866 C - GJB3 Frame_Shift_Del p.C170Afs*98 0.09 TCGA-5M-AAT6-01 1 36039246 36039247 - G TFAP2E Intron 0.09 TCGA-5M-AAT6-01 1 36214076 36214076 G T CLSPN Missense_Mutation p.P801H 0.15 deleterious(0) probably_damaging(0.987) TCGA-5M-AAT6-01 1 36360823 36360823 T C AGO1 Missense_Mutation p.C325R 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 1 3649320 3649320 G A TP73 Missense_Mutation p.A530T 0.11 tolerated(0.12) benign(0.025) TCGA-5M-AAT6-01 1 36550612 36550612 G A TEKT2 Silent p.L30L 0.12 TCGA-5M-AAT6-01 1 36807389 36807389 C T STK40 Silent p.T425T 0.16 TCGA-5M-AAT6-01 1 37267437 37267437 C A GRIK3 3'UTR 0.14 TCGA-5M-AAT6-01 1 37324755 37324755 T C GRIK3 Missense_Mutation p.H353R 0.14 tolerated(0.25) benign(0.008) TCGA-5M-AAT6-01 1 38158199 38158199 C T CDCA8 5'UTR 0.12 TCGA-5M-AAT6-01 1 38260320 38260320 T C MANEAL Missense_Mutation p.F156L 0.14 deleterious(0) possibly_damaging(0.488) TCGA-5M-AAT6-01 1 39340004 39340004 A T GJA9 3'UTR 0.33 TCGA-5M-AAT6-01 1 43131707 43131707 C T PPIH Silent p.C131C 0.13 TCGA-5M-AAT6-01 1 43212715 43212715 G A LEPRE1 Silent p.S761S 0.17 TCGA-5M-AAT6-01 1 43818309 43818309 C T MPL Nonsense_Mutation p.R592* 0.16 TCGA-5M-AAT6-01 1 43905310 43905310 A C SZT2 Missense_Mutation p.E2247D 0.13 tolerated(0.36) benign(0.088) TCGA-5M-AAT6-01 1 44290409 44290409 G A ST3GAL3 Silent p.P87P 0.15 TCGA-5M-AAT6-01 1 44437109 44437109 A G DPH2 Missense_Mutation p.S179G 0.16 tolerated(0.24) benign(0.026) TCGA-5M-AAT6-01 1 44437361 44437361 C T DPH2 Missense_Mutation p.R263W 0.17 deleterious(0.02) possibly_damaging(0.773) TCGA-5M-AAT6-01 1 45102111 45102111 A C RNF220 Intron 0.14 TCGA-5M-AAT6-01 1 45120353 45120353 G A TMEM53 Missense_Mutation p.R238C 0.14 deleterious(0.02) benign(0.008) TCGA-5M-AAT6-01 1 45271624 45271624 G - TCTEX1D4 3'UTR 0.16 TCGA-5M-AAT6-01 1 45407191 45407191 C T EIF2B3 Silent p.G147G 0.14 TCGA-5M-AAT6-01 1 45469202 45469202 C T HECTD3 Missense_Mutation p.V850M 0.22 tolerated(0.3) possibly_damaging(0.532) TCGA-5M-AAT6-01 1 45500108 45500108 G A ZSWIM5 Silent p.G775G 0.11 TCGA-5M-AAT6-01 1 45887395 45887395 A G TESK2 Splice_Site p.X115_splice 0.15 TCGA-5M-AAT6-01 1 47534345 47534345 C T CYP4Z1 Missense_Mutation p.P77S 0.08 deleterious(0.04) probably_damaging(0.96) TCGA-5M-AAT6-01 1 47883204 47883204 C - FOXE3 3'UTR 0.12 TCGA-5M-AAT6-01 1 49208357 49208357 T C BEND5 Missense_Mutation p.T278A 0.08 deleterious(0.02) benign(0.098) TCGA-5M-AAT6-01 1 53333258 53333258 A C ZYG11A Missense_Mutation p.N480T 0.17 deleterious(0.01) benign(0.139) TCGA-5M-AAT6-01 1 55246930 55246930 C T TTC22 Missense_Mutation p.A566T 0.17 tolerated_low_confidence(0.29) benign(0.001) TCGA-5M-AAT6-01 1 55247235 55247235 G A TTC22 Missense_Mutation p.A464V 0.25 tolerated(0.39) benign(0.017) TCGA-5M-AAT6-01 1 55509598 55509598 G A PCSK9 Missense_Mutation p.R97H 0.18 deleterious(0.03) benign(0.212) TCGA-5M-AAT6-01 1 55544244 55544244 C T USP24 Silent p.E2427E 0.21 TCGA-5M-AAT6-01 1 57157094 57157094 T - PRKAA2 Frame_Shift_Del p.F90Lfs*3 0.09 TCGA-5M-AAT6-01 1 6170037 6170037 G A CHD5 Missense_Mutation p.A1799V 0.11 deleterious(0) benign(0.184) TCGA-5M-AAT6-01 1 62175007 62175007 C T TM2D1 Missense_Mutation p.R176Q 0.12 tolerated(0.06) possibly_damaging(0.56) TCGA-5M-AAT6-01 1 64104407 64104408 - T PGM1 Frame_Shift_Ins p.G381Wfs*22 0.15 TCGA-5M-AAT6-01 1 64644512 64644512 G A ROR1 Missense_Mutation p.E930K 0.10 deleterious_low_confidence(0.02) benign(0.053) TCGA-5M-AAT6-01 1 6520185 6520185 G - ESPN Frame_Shift_Del p.D850Tfs*49 0.10 TCGA-5M-AAT6-01 1 6528043 6528043 G T PLEKHG5 Silent p.G1030G 0.22 TCGA-5M-AAT6-01 1 65851439 65851439 G A DNAJC6 Missense_Mutation p.R282H 0.16 tolerated(0.35) benign(0) TCGA-5M-AAT6-01 1 6696237 6696237 G A DNAJC11 Missense_Mutation p.R532W 0.16 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 1 75596323 75596323 G A LHX8 5'UTR 0.12 TCGA-5M-AAT6-01 1 77748051 77748051 T C AK5 Missense_Mutation p.L18P 0.16 deleterious(0) probably_damaging(0.953) TCGA-5M-AAT6-01 1 78383331 78383331 A G NEXN Silent p.E36E 0.15 TCGA-5M-AAT6-01 1 78511722 78511722 G - GIPC2 5'UTR 0.15 TCGA-5M-AAT6-01 1 82415942 82415942 C T LPHN2 Missense_Mutation p.T423I 0.18 tolerated(0.09) benign(0.187) TCGA-5M-AAT6-01 1 8420318 8420318 C - RERE Frame_Shift_Del p.S1084Rfs*173 0.15 TCGA-5M-AAT6-01 1 84630690 84630690 A G PRKACB Intron 0.17 TCGA-5M-AAT6-01 1 86361719 86361719 C A COL24A1 Silent p.G954G 0.12 TCGA-5M-AAT6-01 1 89732755 89732755 C T GBP5 Silent p.A170A 0.12 TCGA-5M-AAT6-01 1 90179580 90179580 C T LRRC8C Missense_Mutation p.A484V 0.07 tolerated(0.27) benign(0.078) TCGA-5M-AAT6-01 1 90401566 90401566 T - LRRC8D 3'UTR 0.11 TCGA-5M-AAT6-01 1 91182181 91182181 C T BARHL2 Missense_Mutation p.S191N 0.12 tolerated(0.45) unknown(0) TCGA-5M-AAT6-01 1 914722 914722 G - C1orf170 Frame_Shift_Del p.P469Lfs*5 0.14 TCGA-5M-AAT6-01 1 91742600 91742600 T - HFM1 Frame_Shift_Del p.K1137Nfs*44 0.15 TCGA-5M-AAT6-01 1 91845682 91845682 A G HFM1 Silent p.L329L 0.14 TCGA-5M-AAT6-01 1 92646714 92646714 T G KIAA1107 Missense_Mutation p.N720K 0.13 tolerated(0.06) benign(0.234) TCGA-5M-AAT6-01 1 93160955 93160955 A G EVI5 Missense_Mutation p.M318T 0.14 deleterious(0) benign(0.062) TCGA-5M-AAT6-01 1 93599535 93599535 A G MTF2 Missense_Mutation p.I439M 0.11 tolerated(0.24) benign(0.024) TCGA-5M-AAT6-01 1 93645735 93645735 A G TMED5 Missense_Mutation p.L22P 0.21 tolerated(0.11) benign(0) TCGA-5M-AAT6-01 1 94338730 94338730 T - DNTTIP2 Frame_Shift_Del p.N616Tfs*33 0.11 TCGA-5M-AAT6-01 1 94496601 94496601 C T ABCA4 Missense_Mutation p.A1402T 0.15 deleterious(0.03) benign(0.006) TCGA-5M-AAT6-01 1 94544925 94544925 T - ABCA4 Frame_Shift_Del p.I398Sfs*14 0.10 TCGA-5M-AAT6-01 1 94639400 94639400 A - ARHGAP29 3'UTR 0.09 TCGA-5M-AAT6-01 1 94643542 94643542 C A ARHGAP29 Missense_Mutation p.G888W 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-5M-AAT6-01 1 95001529 95001529 T C F3 Missense_Mutation p.Y135C 0.15 deleterious(0) probably_damaging(0.993) TCGA-5M-AAT6-01 1 978820 978820 C T AGRN Missense_Mutation p.A529V 0.14 tolerated(0.27) possibly_damaging(0.798) TCGA-5M-AAT6-01 20 10603563 10603563 C T SLX4IP Nonsense_Mutation p.Q255* 0.13 TCGA-5M-AAT6-01 20 139441 139441 A G DEFB127 Missense_Mutation p.N26D 0.11 tolerated(0.49) benign(0) TCGA-5M-AAT6-01 20 17581526 17581528 AGA - DSTN In_Frame_Del p.E51del 0.15 TCGA-5M-AAT6-01 20 18470479 18470480 CA - RBBP9 Frame_Shift_Del p.C163Wfs*10 0.13 TCGA-5M-AAT6-01 20 20349329 20349329 G - INSM1 Frame_Shift_Del p.G141Afs*95 0.12 TCGA-5M-AAT6-01 20 25507059 25507059 G A NINL Silent p.N55N 0.10 TCGA-5M-AAT6-01 20 2796319 2796319 C T C20orf141 Silent p.D132D 0.17 TCGA-5M-AAT6-01 20 2840721 2840721 G A VPS16 Missense_Mutation p.R55Q 0.09 tolerated(0.3) benign(0.031) TCGA-5M-AAT6-01 20 30194280 30194280 T - ID1 3'UTR 0.11 TCGA-5M-AAT6-01 20 30309572 30309572 C T BCL2L1 Silent p.L150L 0.18 TCGA-5M-AAT6-01 20 30388901 30388901 G A TPX2 3'UTR 0.18 TCGA-5M-AAT6-01 20 30584346 30584346 A C XKR7 Missense_Mutation p.T276P 0.13 tolerated(0.09) possibly_damaging(0.79) TCGA-5M-AAT6-01 20 30898479 30898479 T C KIF3B Missense_Mutation p.L300P 0.06 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 20 31022968 31022968 T C ASXL1 Missense_Mutation p.V818A 0.16 tolerated_low_confidence(0.21) benign(0.001) TCGA-5M-AAT6-01 20 31669418 31669418 C T BPIFB4 Missense_Mutation p.T29M 0.10 deleterious_low_confidence(0) possibly_damaging(0.684) TCGA-5M-AAT6-01 20 31876603 31876603 C G BPIFB1 Missense_Mutation p.L58V 0.10 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 20 32251507 32251507 T G C20orf144 Missense_Mutation p.L99R 0.18 tolerated(0.19) probably_damaging(0.955) TCGA-5M-AAT6-01 20 33065619 33065619 G A ITCH Missense_Mutation p.V579M 0.16 deleterious(0) possibly_damaging(0.785) TCGA-5M-AAT6-01 20 33568487 33568487 C T MYH7B Missense_Mutation p.P192L 0.10 probably_damaging(1) TCGA-5M-AAT6-01 20 33572932 33572932 T C MYH7B Missense_Mutation p.Y311H 0.19 probably_damaging(0.99) TCGA-5M-AAT6-01 20 33582051 33582051 G A MYH7B Silent p.S891S 0.15 TCGA-5M-AAT6-01 20 33762584 33762584 G - PROCR Frame_Shift_Del p.G52Dfs*3 0.18 TCGA-5M-AAT6-01 20 33866875 33866875 A G EIF6 3'UTR 0.22 TCGA-5M-AAT6-01 20 34144076 34144076 C T ERGIC3 Intron 0.13 TCGA-5M-AAT6-01 20 34451318 34451318 T C PHF20 Silent p.P268P 0.06 TCGA-5M-AAT6-01 20 34773151 34773151 T C EPB41L1 Missense_Mutation p.Y227H 0.13 deleterious(0.04) benign(0.101) TCGA-5M-AAT6-01 20 35683982 35683982 G A RBL1 Nonsense_Mutation p.R481* 0.10 TCGA-5M-AAT6-01 20 36500463 36500463 G T CTNNBL1 3'UTR 0.15 TCGA-5M-AAT6-01 20 36625315 36625315 C T TTI1 Missense_Mutation p.R945H 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-5M-AAT6-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.11 TCGA-5M-AAT6-01 20 36978043 36978043 C T LBP Missense_Mutation p.R73C 0.10 deleterious(0) probably_damaging(0.953) TCGA-5M-AAT6-01 20 37202847 37202847 T C RALGAPB Silent p.T1399T 0.15 TCGA-5M-AAT6-01 20 3784183 3784183 A G CDC25B Missense_Mutation p.M497V 0.28 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 20 3804584 3804584 G T AP5S1 Silent p.P81P 0.12 TCGA-5M-AAT6-01 20 39987539 39987539 G A LPIN3 3'UTR 0.22 TCGA-5M-AAT6-01 20 40045835 40045835 T C CHD6 Intron 0.15 TCGA-5M-AAT6-01 20 41101117 41101117 C T PTPRT Silent p.A413A 0.09 TCGA-5M-AAT6-01 20 42213730 42213730 G A SGK2 3'UTR 0.10 TCGA-5M-AAT6-01 20 42744870 42744870 C - JPH2 Frame_Shift_Del p.G482Vfs*26 0.10 TCGA-5M-AAT6-01 20 43703717 43703717 T C STK4 Missense_Mutation p.M455T 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-5M-AAT6-01 20 44505585 44505585 G A ZSWIM3 Missense_Mutation p.V130M 0.07 tolerated(0.14) benign(0.008) TCGA-5M-AAT6-01 20 44506427 44506427 G T ZSWIM3 Missense_Mutation p.Q410H 0.12 tolerated(0.15) benign(0.444) TCGA-5M-AAT6-01 20 44513842 44513842 G T ZSWIM1 3'UTR 0.13 TCGA-5M-AAT6-01 20 44515313 44515313 T C SPATA25 Missense_Mutation p.D176G 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-5M-AAT6-01 20 44879851 44879851 G A CDH22 Missense_Mutation p.P28L 0.16 tolerated(0.67) possibly_damaging(0.726) TCGA-5M-AAT6-01 20 44879854 44879854 G A CDH22 Missense_Mutation p.P27L 0.17 tolerated(0.7) possibly_damaging(0.726) TCGA-5M-AAT6-01 20 45607251 45607251 G A EYA2 Intron 0.18 TCGA-5M-AAT6-01 20 45853189 45853189 G A ZMYND8 Missense_Mutation p.R967W 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 20 46279790 46279790 G A NCOA3 Missense_Mutation p.R1239Q 0.16 tolerated(0.1) benign(0.014) TCGA-5M-AAT6-01 20 48565861 48565861 G A RNF114 Missense_Mutation p.R197H 0.12 tolerated(0.38) probably_damaging(0.989) TCGA-5M-AAT6-01 20 49366395 49366395 C T PARD6B Silent p.Y163Y 0.14 TCGA-5M-AAT6-01 20 49508881 49508881 T C ADNP Silent p.A790A 0.12 TCGA-5M-AAT6-01 20 49620903 49620903 G A KCNG1 Silent p.S405S 0.14 TCGA-5M-AAT6-01 20 55066693 55066693 G A GCNT7 Silent p.L283L 0.13 TCGA-5M-AAT6-01 20 57415666 57415666 C T RP4-806M20.3 5'Flank 0.11 TCGA-5M-AAT6-01 20 57569782 57569782 A - NELFCD 3'UTR 0.13 TCGA-5M-AAT6-01 20 57576589 57576589 C T CTSZ Missense_Mutation p.V140M 0.14 deleterious(0) probably_damaging(0.994) TCGA-5M-AAT6-01 20 58519127 58519127 T C FAM217B Silent p.P43P 0.10 TCGA-5M-AAT6-01 20 60891938 60891938 C T LAMA5 Silent p.A2551A 0.14 TCGA-5M-AAT6-01 20 60927049 60927049 G A LAMA5 Silent p.N258N 0.12 TCGA-5M-AAT6-01 20 60991920 60991920 G A RBBP8NL Missense_Mutation p.A70V 0.11 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 20 61041598 61041598 G A GATA5 Missense_Mutation p.R237C 0.22 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 20 61511190 61511190 G A DIDO1 Missense_Mutation p.R2040C 0.10 probably_damaging(0.997) TCGA-5M-AAT6-01 20 62046373 62046373 C T KCNQ2 Missense_Mutation p.D470N 0.13 tolerated(0.15) benign(0.023) TCGA-5M-AAT6-01 20 62160866 62160866 G A PTK6 3'UTR 0.08 TCGA-5M-AAT6-01 20 62193733 62193733 C T HELZ2 Missense_Mutation p.R2102H 0.11 deleterious(0) probably_damaging(0.939) TCGA-5M-AAT6-01 20 62492771 62492771 C T ABHD16B 5'UTR 0.19 TCGA-5M-AAT6-01 20 62493826 62493826 G A ABHD16B Silent p.P311P 0.15 TCGA-5M-AAT6-01 20 62500682 62500682 T C TPD52L2 Missense_Mutation p.L18P 0.15 deleterious(0.04) probably_damaging(0.953) TCGA-5M-AAT6-01 20 62700839 62700839 C T TCEA2 Missense_Mutation p.T152M 0.12 tolerated(0.17) probably_damaging(0.971) TCGA-5M-AAT6-01 20 62839225 62839225 G A MYT1 Missense_Mutation p.E226K 0.12 benign(0) TCGA-5M-AAT6-01 20 941043 941043 C T RSPO4 Missense_Mutation p.R221H 0.14 tolerated(0.19) benign(0.001) TCGA-5M-AAT6-01 21 11038738 11038738 C T BAGE2 RNA 0.05 TCGA-5M-AAT6-01 21 19755991 19755991 C T TMPRSS15 Missense_Mutation p.S150N 0.17 tolerated(0.47) benign(0.06) TCGA-5M-AAT6-01 21 30458175 30458175 C T MAP3K7CL 5'UTR 0.16 TCGA-5M-AAT6-01 21 31768772 31768772 G T KRTAP13-1 Missense_Mutation p.G123V 0.12 deleterious(0.02) probably_damaging(0.919) TCGA-5M-AAT6-01 21 32253395 32253395 G A KRTAP11-1 Missense_Mutation p.T150M 0.16 tolerated(0.12) benign(0.081) TCGA-5M-AAT6-01 21 33694216 33694216 C T URB1 Silent p.R1793R 0.09 TCGA-5M-AAT6-01 21 34120916 34120916 C T PAXBP1 Missense_Mutation p.R606H 0.19 deleterious(0.02) benign(0.091) TCGA-5M-AAT6-01 21 34861687 34861687 T C DNAJC28 Missense_Mutation p.Y5C 0.14 tolerated_low_confidence(0.23) benign(0.003) TCGA-5M-AAT6-01 21 37518573 37518573 G - CBR3 Frame_Shift_Del p.V201Sfs*23 0.08 TCGA-5M-AAT6-01 21 38117418 38117418 C A SIM2 Missense_Mutation p.S519R 0.06 tolerated_low_confidence(0.1) benign(0.388) TCGA-5M-AAT6-01 21 38117536 38117536 C T SIM2 Intron 0.11 TCGA-5M-AAT6-01 21 40570975 40570975 C A BRWD1 Missense_Mutation p.E1789D 0.11 tolerated_low_confidence(0.13) probably_damaging(0.986) TCGA-5M-AAT6-01 21 40977742 40977742 T A C21orf88 Intron 0.17 TCGA-5M-AAT6-01 21 43259863 43259864 - C PRDM15 Frame_Shift_Ins p.E613Gfs*32 0.12 TCGA-5M-AAT6-01 21 43277367 43277367 T G PRDM15 Missense_Mutation p.Q434P 0.12 deleterious_low_confidence(0.05) benign(0.024) TCGA-5M-AAT6-01 21 43519102 43519102 G A UMODL1 Missense_Mutation p.R333H 0.14 tolerated(0.69) benign(0.167) TCGA-5M-AAT6-01 21 43693434 43693434 C A ABCG1 Silent p.A142A 0.09 TCGA-5M-AAT6-01 21 43733688 43733688 G - TFF3 Frame_Shift_Del p.H60Mfs*78 0.15 TCGA-5M-AAT6-01 21 43771051 43771051 C T TFF2 Missense_Mutation p.A6T 0.17 tolerated(0.29) benign(0) TCGA-5M-AAT6-01 21 44171284 44171284 C T PDE9A Missense_Mutation p.R238C 0.13 deleterious(0.02) probably_damaging(0.953) TCGA-5M-AAT6-01 21 44841137 44841137 G - SIK1 Frame_Shift_Del p.Q204Sfs*29 0.16 TCGA-5M-AAT6-01 21 45457723 45457723 A G TRAPPC10 Missense_Mutation p.Q67R 0.11 tolerated(0.34) benign(0.019) TCGA-5M-AAT6-01 21 46011650 46011650 C T KRTAP10-6 Missense_Mutation p.C239Y 0.14 deleterious(0.02) unknown(0) TCGA-5M-AAT6-01 21 46101792 46101792 C T KRTAP12-1 Missense_Mutation p.V83I 0.17 deleterious(0.02) benign(0.103) TCGA-5M-AAT6-01 21 46600350 46600350 A G ADARB1 Missense_Mutation p.M357V 0.12 deleterious(0) benign(0.052) TCGA-5M-AAT6-01 21 46685357 46685357 G A POFUT2 3'UTR 0.17 TCGA-5M-AAT6-01 21 46951816 46951816 G A SLC19A1 Missense_Mutation p.P146S 0.19 tolerated(0.06) probably_damaging(0.989) TCGA-5M-AAT6-01 21 47581441 47581441 C T SPATC1L Missense_Mutation p.R292H 0.17 tolerated(0.39) benign(0.362) TCGA-5M-AAT6-01 21 47602647 47602647 A T SPATC1L Missense_Mutation p.N28K 0.14 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 21 47734699 47734699 G - C21orf58 Frame_Shift_Del p.T181Rfs*41 0.15 TCGA-5M-AAT6-01 22 18020333 18020333 G A CECR2 Silent p.S555S 0.16 TCGA-5M-AAT6-01 22 18301431 18301431 C T MICAL3 Silent p.A1332A 0.19 TCGA-5M-AAT6-01 22 18379573 18379573 A G MICAL3 Missense_Mutation p.Y375H 0.11 probably_damaging(0.99) TCGA-5M-AAT6-01 22 19118789 19118789 T C TSSK2 5'UTR 0.09 TCGA-5M-AAT6-01 22 19197910 19197910 C T CLTCL1 Missense_Mutation p.A1059T 0.25 deleterious(0.01) benign(0.147) TCGA-5M-AAT6-01 22 19381902 19381902 A G HIRA Missense_Mutation p.M262T 0.20 deleterious(0) probably_damaging(0.978) TCGA-5M-AAT6-01 22 19504341 19504341 T - CDC45 Frame_Shift_Del p.F554Lfs*25 0.18 TCGA-5M-AAT6-01 22 19902785 19902785 G A TXNRD2 Silent p.A181A 0.15 TCGA-5M-AAT6-01 22 20127344 20127344 C T ZDHHC8 Silent p.G162G 0.10 TCGA-5M-AAT6-01 22 20307488 20307488 C T DGCR6L Silent p.L8L 0.17 TCGA-5M-AAT6-01 22 20905775 20905775 G A MED15 Splice_Site p.X70_splice 0.11 TCGA-5M-AAT6-01 22 21153513 21153513 C T PI4KA Silent p.A624A 0.12 TCGA-5M-AAT6-01 22 21363902 21363902 A G AC002472.1 5'Flank 0.11 TCGA-5M-AAT6-01 22 21982626 21982626 A C YDJC 3'UTR 0.15 TCGA-5M-AAT6-01 22 23029678 23029678 A G IGLV3-25 Missense_Mutation p.S94G 0.10 deleterious(0.01) possibly_damaging(0.901) TCGA-5M-AAT6-01 22 23637300 23637300 C T BCR Silent p.D990D 0.16 TCGA-5M-AAT6-01 22 24041151 24041151 C T RGL4 3'UTR 0.17 TCGA-5M-AAT6-01 22 24179098 24179098 A G DERL3 Intron 0.13 TCGA-5M-AAT6-01 22 24456552 24456552 G A CABIN1 Missense_Mutation p.S522N 0.18 tolerated(0.11) probably_damaging(0.985) TCGA-5M-AAT6-01 22 24717563 24717563 A G SPECC1L Silent p.E205E 0.23 TCGA-5M-AAT6-01 22 24761473 24761473 C T SPECC1L Missense_Mutation p.R953W 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-5M-AAT6-01 22 26164234 26164234 T C MYO18B Silent p.P117P 0.15 TCGA-5M-AAT6-01 22 26829845 26829845 C T ASPHD2 Silent p.S88S 0.09 TCGA-5M-AAT6-01 22 28503648 28503649 - T TTC28 Frame_Shift_Ins p.D729Rfs*10 0.16 TCGA-5M-AAT6-01 22 29121241 29121241 C T CHEK2 Missense_Mutation p.R188Q 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-5M-AAT6-01 22 29139928 29139928 C T HSCB Missense_Mutation p.R99C 0.14 deleterious(0.02) benign(0.09) TCGA-5M-AAT6-01 22 29153398 29153398 G A HSCB 3'UTR 0.20 TCGA-5M-AAT6-01 22 29695684 29695684 C T EWSR1 Missense_Mutation p.R597C 0.08 tolerated_low_confidence(0.19) unknown(0) TCGA-5M-AAT6-01 22 29707891 29707891 G A GAS2L1 3'UTR 0.18 TCGA-5M-AAT6-01 22 29904418 29904419 - G THOC5 3'UTR 0.11 TCGA-5M-AAT6-01 22 31668516 31668516 G A LIMK2 Missense_Mutation p.D441N 0.10 tolerated(0.53) benign(0.402) TCGA-5M-AAT6-01 22 32545577 32545577 G A C22orf42 Missense_Mutation p.R236W 0.14 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-5M-AAT6-01 22 32929869 32929869 C A SYN3 Missense_Mutation p.W335C 0.07 deleterious(0) unknown(0) TCGA-5M-AAT6-01 22 33402451 33402451 G A SYN3 Missense_Mutation p.A66V 0.12 tolerated(0.34) unknown(0) TCGA-5M-AAT6-01 22 36177745 36177745 T G RBFOX2 Missense_Mutation p.S171R 0.10 benign(0.156) TCGA-5M-AAT6-01 22 36912768 36912768 C T EIF3D Missense_Mutation p.A354T 0.11 deleterious(0) probably_damaging(0.949) TCGA-5M-AAT6-01 22 37693699 37693699 C T CYTH4 Missense_Mutation p.A110V 0.11 tolerated(0.14) probably_damaging(1) TCGA-5M-AAT6-01 22 37887126 37887126 A G CARD10 3'UTR 0.19 TCGA-5M-AAT6-01 22 37903889 37903889 G A CARD10 Missense_Mutation p.R380C 0.19 deleterious(0.03) possibly_damaging(0.587) TCGA-5M-AAT6-01 22 38211287 38211287 G A GCAT Missense_Mutation p.R270Q 0.11 deleterious(0) probably_damaging(0.993) TCGA-5M-AAT6-01 22 38273714 38273714 C T EIF3L Silent p.L371L 0.20 TCGA-5M-AAT6-01 22 38369872 38369872 G A SOX10 Missense_Mutation p.T344M 0.12 deleterious(0.04) benign(0.197) TCGA-5M-AAT6-01 22 39145787 39145787 C T SUN2 Missense_Mutation p.V221I 0.23 deleterious(0.01) possibly_damaging(0.883) TCGA-5M-AAT6-01 22 39358512 39358512 T C APOBEC3A Nonstop_Mutation p.*200Rext*7 0.14 TCGA-5M-AAT6-01 22 39418883 39418883 C A APOBEC3D Missense_Mutation p.P25H 0.18 deleterious(0) probably_damaging(0.94) TCGA-5M-AAT6-01 22 39712988 39712988 G A RPL3 Intron 0.21 TCGA-5M-AAT6-01 22 39760267 39760267 C T SYNGR1 Intron 0.14 TCGA-5M-AAT6-01 22 39813809 39813809 G A TAB1 Missense_Mutation p.V169I 0.11 tolerated(0.55) benign(0.001) TCGA-5M-AAT6-01 22 39883898 39883898 C T MGAT3 Silent p.C182C 0.25 TCGA-5M-AAT6-01 22 39885237 39885237 G A MGAT3 3'UTR 0.07 TCGA-5M-AAT6-01 22 40080309 40080309 C - CACNA1I Frame_Shift_Del p.P1946Qfs*91 0.15 TCGA-5M-AAT6-01 22 40804997 40804997 C T SGSM3 Missense_Mutation p.R655C 0.10 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 22 41195058 41195058 A - SLC25A17 Frame_Shift_Del p.L30Wfs*42 0.14 TCGA-5M-AAT6-01 22 41488636 41488636 G T EP300 5'UTR 0.13 TCGA-5M-AAT6-01 22 41642646 41642646 G A RANGAP1 Silent p.F575F 0.24 TCGA-5M-AAT6-01 22 41736029 41736029 G A ZC3H7B Silent p.P342P 0.20 TCGA-5M-AAT6-01 22 41833138 41833138 G A TOB2 Missense_Mutation p.A71V 0.08 deleterious(0) probably_damaging(0.995) TCGA-5M-AAT6-01 22 42042975 42042975 T C XRCC6 Silent p.P283P 0.13 TCGA-5M-AAT6-01 22 42262915 42262915 A G SREBF2 Missense_Mutation p.S57G 0.16 tolerated(0.55) benign(0) TCGA-5M-AAT6-01 22 42910143 42910143 G A RRP7A Silent p.Y242Y 0.22 TCGA-5M-AAT6-01 22 43529446 43529446 C T MCAT Missense_Mutation p.R259H 0.12 deleterious(0) possibly_damaging(0.719) TCGA-5M-AAT6-01 22 43576864 43576864 G A TTLL12 Missense_Mutation p.R144C 0.12 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 22 43821204 43821204 G A MPPED1 Silent p.P71P 0.16 TCGA-5M-AAT6-01 22 45736395 45736395 G A FAM118A 3'UTR 0.16 TCGA-5M-AAT6-01 22 46709794 46709794 T C GTSE1 Missense_Mutation p.L312P 0.19 tolerated(0.13) benign(0.104) TCGA-5M-AAT6-01 22 47059061 47059061 C T GRAMD4 Silent p.S197S 0.12 TCGA-5M-AAT6-01 22 47064750 47064750 G T GRAMD4 Missense_Mutation p.W343C 0.32 tolerated(0.17) benign(0.117) TCGA-5M-AAT6-01 22 50719548 50719548 C T PLXNB2 Missense_Mutation p.V1245M 0.20 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 22 50899064 50899064 C T SBF1 Silent p.R1015R 0.22 TCGA-5M-AAT6-01 22 50920295 50920295 G A ADM2 Missense_Mutation p.A7T 0.16 deleterious(0.01) benign(0.025) TCGA-5M-AAT6-01 22 50944849 50944849 G - LMF2 Frame_Shift_Del p.Q154Rfs*34 0.13 TCGA-5M-AAT6-01 22 50987924 50987924 C T KLHDC7B Silent p.H443H 0.25 TCGA-5M-AAT6-01 22 51009389 51009389 G A CPT1B Silent p.I653I 0.15 TCGA-5M-AAT6-01 22 51065757 51065757 C - ARSA Frame_Shift_Del p.G101Afs*7 0.10 TCGA-5M-AAT6-01 22 51169514 51169514 G A SHANK3 Missense_Mutation p.R1673H 0.18 possibly_damaging(0.489) TCGA-5M-AAT6-01 22 51169748 51169748 C T SHANK3 3'UTR 0.12 TCGA-5M-AAT6-01 2 100210278 100210278 C - AFF3 Frame_Shift_Del p.T641Rfs*30 0.11 TCGA-5M-AAT6-01 2 100915709 100915709 A C LONRF2 Missense_Mutation p.F447C 0.05 deleterious(0) probably_damaging(0.961) TCGA-5M-AAT6-01 2 10091891 10091892 - C GRHL1 5'UTR 0.12 TCGA-5M-AAT6-01 2 101609937 101609937 C T NPAS2 Missense_Mutation p.S747L 0.18 tolerated(0.16) benign(0.052) TCGA-5M-AAT6-01 2 101893500 101893500 T C RNF149 3'UTR 0.32 TCGA-5M-AAT6-01 2 101925023 101925023 C T RNF149 Missense_Mutation p.V10I 0.25 tolerated_low_confidence(0.28) benign(0.001) TCGA-5M-AAT6-01 2 102475492 102475492 G A MAP4K4 Missense_Mutation p.R477Q 0.12 tolerated_low_confidence(0.12) unknown(0) TCGA-5M-AAT6-01 2 102956566 102956566 T A IL1RL1 Missense_Mutation p.F94Y 0.09 tolerated(1) benign(0.102) TCGA-5M-AAT6-01 2 108626685 108626685 C - SLC5A7 Intron 0.16 TCGA-5M-AAT6-01 2 110922105 110922105 C - NPHP1 Frame_Shift_Del p.V311Cfs*5 0.10 TCGA-5M-AAT6-01 2 111419247 111419247 C T BUB1 Missense_Mutation p.A377T 0.21 tolerated(0.16) benign(0.038) TCGA-5M-AAT6-01 2 111666436 111666436 C T ACOXL Silent p.L287L 0.11 TCGA-5M-AAT6-01 2 112560064 112560064 G A ANAPC1 Nonsense_Mutation p.R1388* 0.11 TCGA-5M-AAT6-01 2 113089840 113089840 G A ZC3H6 Silent p.A1115A 0.13 TCGA-5M-AAT6-01 2 11426745 11426745 T - ROCK2 Frame_Shift_Del p.I82Sfs*6 0.09 TCGA-5M-AAT6-01 2 118677872 118677872 G A CCDC93 3'UTR 0.17 TCGA-5M-AAT6-01 2 119600464 119600464 A G EN1 3'UTR 0.19 TCGA-5M-AAT6-01 2 119750038 119750038 A - MARCO Frame_Shift_Del p.G415Vfs*131 0.09 TCGA-5M-AAT6-01 2 120005588 120005588 C T STEAP3 Silent p.L286L 0.22 TCGA-5M-AAT6-01 2 121746494 121746494 G A GLI2 Missense_Mutation p.A1002T 0.16 tolerated(0.39) benign(0.001) TCGA-5M-AAT6-01 2 121746816 121746816 G T GLI2 Missense_Mutation p.R1109M 0.15 deleterious(0.02) possibly_damaging(0.541) TCGA-5M-AAT6-01 2 127806137 127806137 C T BIN1 Missense_Mutation p.V583I 0.17 deleterious(0.02) possibly_damaging(0.609) TCGA-5M-AAT6-01 2 128327442 128327442 G A MYO7B Silent p.S183S 0.12 TCGA-5M-AAT6-01 2 128350467 128350467 C T MYO7B Silent p.F697F 0.17 TCGA-5M-AAT6-01 2 128393352 128393352 A G MYO7B Missense_Mutation p.H1933R 0.14 tolerated(0.16) possibly_damaging(0.529) TCGA-5M-AAT6-01 2 128461994 128461994 A - WDR33 3'UTR 0.11 TCGA-5M-AAT6-01 2 128631426 128631426 A G AMMECR1L Missense_Mutation p.L128P 0.12 tolerated(0.36) benign(0.006) TCGA-5M-AAT6-01 2 133403841 133403841 C T LYPD1 Missense_Mutation p.R68H 0.11 deleterious(0) probably_damaging(0.989) TCGA-5M-AAT6-01 2 136071093 136071093 A T ZRANB3 Missense_Mutation p.I311K 0.12 deleterious(0) possibly_damaging(0.882) TCGA-5M-AAT6-01 2 136567502 136567502 G A LCT Silent p.F805F 0.13 TCGA-5M-AAT6-01 2 139308542 139308542 A G SPOPL Silent p.L90L 0.14 TCGA-5M-AAT6-01 2 141108388 141108389 - T LRP1B Frame_Shift_Ins p.R3957Kfs*11 0.12 TCGA-5M-AAT6-01 2 141115600 141115600 A G LRP1B Silent p.C3781C 0.08 TCGA-5M-AAT6-01 2 141607702 141607702 G A LRP1B Silent p.N1636N 0.09 TCGA-5M-AAT6-01 2 149818531 149818531 G A KIF5C Missense_Mutation p.A339T 0.15 deleterious(0) possibly_damaging(0.676) TCGA-5M-AAT6-01 2 152409185 152409185 C T NEB Splice_Site p.X6612_splice 0.14 TCGA-5M-AAT6-01 2 152477449 152477449 C T NEB Missense_Mutation p.R3515Q 0.18 probably_damaging(0.999) TCGA-5M-AAT6-01 2 152484303 152484303 C T NEB Missense_Mutation p.G3293R 0.15 probably_damaging(1) TCGA-5M-AAT6-01 2 15651437 15651437 C A NBAS Missense_Mutation p.G262C 0.04 tolerated(0.1) probably_damaging(0.994) TCGA-5M-AAT6-01 2 159488425 159488425 G A PKP4 Silent p.S438S 0.11 TCGA-5M-AAT6-01 2 160239175 160239175 G A BAZ2B Silent p.D1300D 0.15 TCGA-5M-AAT6-01 2 160605255 160605255 G A MARCH7 Missense_Mutation p.R485Q 0.09 tolerated(0.06) probably_damaging(0.992) TCGA-5M-AAT6-01 2 160808067 160808067 A G PLA2R1 Silent p.N1108N 0.14 TCGA-5M-AAT6-01 2 162273143 162273143 A C TBR1 Silent p.S74S 0.09 TCGA-5M-AAT6-01 2 1652863 1652863 C T PXDN Missense_Mutation p.V897M 0.15 deleterious(0) probably_damaging(0.952) TCGA-5M-AAT6-01 2 165947673 165947673 G A SCN3A Silent p.L1664L 0.19 TCGA-5M-AAT6-01 2 16742746 16742746 C T FAM49A Missense_Mutation p.R164H 0.14 deleterious(0.03) possibly_damaging(0.841) TCGA-5M-AAT6-01 2 168102391 168102391 C T XIRP2 Nonsense_Mutation p.R1497* 0.15 TCGA-5M-AAT6-01 2 169717340 169717340 T - NOSTRIN Frame_Shift_Del p.L464* 0.16 TCGA-5M-AAT6-01 2 170361590 170361590 G A BBS5 3'UTR 0.17 TCGA-5M-AAT6-01 2 175213387 175213387 A G CIR1 Silent p.S397S 0.17 TCGA-5M-AAT6-01 2 177016482 177016482 G T HOXD4 Missense_Mutation p.A41S 0.10 tolerated(0.72) benign(0.003) TCGA-5M-AAT6-01 2 178095625 178095625 C T NFE2L2 Missense_Mutation p.R569H 0.15 deleterious(0.03) benign(0.082) TCGA-5M-AAT6-01 2 179257151 179257151 C A OSBPL6 Missense_Mutation p.T845K 0.15 tolerated(1) possibly_damaging(0.888) TCGA-5M-AAT6-01 2 179422748 179422748 G A TTN Silent p.D29111D 0.16 TCGA-5M-AAT6-01 2 179439316 179439316 T C TTN Missense_Mutation p.H23848R 0.19 TCGA-5M-AAT6-01 2 179439852 179439852 T - TTN Frame_Shift_Del p.G23670Efs*22 0.08 TCGA-5M-AAT6-01 2 179477254 179477254 A G TTN Silent p.N16666N 0.21 TCGA-5M-AAT6-01 2 179529599 179529600 - T TTN Frame_Shift_Ins p.R12033Kfs*7 0.16 TCGA-5M-AAT6-01 2 179753318 179753318 G A CCDC141 Missense_Mutation p.A448V 0.10 deleterious(0.03) benign(0.076) TCGA-5M-AAT6-01 2 183960496 183960496 T - DUSP19 3'UTR 0.11 TCGA-5M-AAT6-01 2 184016366 184016366 G T NUP35 Silent p.V176V 0.18 TCGA-5M-AAT6-01 2 185803441 185803441 C T ZNF804A Silent p.H1106H 0.14 TCGA-5M-AAT6-01 2 189859303 189859303 G A COL3A1 Missense_Mutation p.G444R 0.10 unknown(0) TCGA-5M-AAT6-01 2 190426500 190426500 A - SLC40A1 3'UTR 0.10 TCGA-5M-AAT6-01 2 190531879 190531879 C T ASNSD1 Missense_Mutation p.R341C 0.16 deleterious(0.02) benign(0.287) TCGA-5M-AAT6-01 2 1926286 1926286 T G MYT1L Silent p.R419R 0.10 TCGA-5M-AAT6-01 2 192711345 192711345 A G SDPR Missense_Mutation p.Y103H 0.11 tolerated(0.45) benign(0.052) TCGA-5M-AAT6-01 2 196659216 196659216 G A DNAH7 Missense_Mutation p.T3521M 0.17 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 2 197172743 197172743 G A HECW2 Missense_Mutation p.T834M 0.17 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 2 197943267 197943267 A - ANKRD44 3'UTR 0.15 TCGA-5M-AAT6-01 2 198540194 198540194 T C RFTN2 5'UTR 0.17 TCGA-5M-AAT6-01 2 201681049 201681049 T - BZW1 Frame_Shift_Del p.F146Lfs*4 0.14 TCGA-5M-AAT6-01 2 20173373 20173373 A G WDR35 Missense_Mutation p.M278T 0.05 tolerated(0.7) benign(0) TCGA-5M-AAT6-01 2 201943745 201943745 G A NDUFB3 Missense_Mutation p.R47H 0.12 tolerated(0.05) benign(0.042) TCGA-5M-AAT6-01 2 202141582 202141582 A G CASP8 Silent p.K290K 0.14 TCGA-5M-AAT6-01 2 20234731 20234731 A - LAPTM4A Frame_Shift_Del p.F175Lfs*5 0.13 TCGA-5M-AAT6-01 2 204103729 204103729 T C CYP20A1 5'UTR 0.10 TCGA-5M-AAT6-01 2 204292058 204292058 A G ABI2 Missense_Mutation p.M471V 0.16 deleterious_low_confidence(0) possibly_damaging(0.761) TCGA-5M-AAT6-01 2 20455057 20455057 G A PUM2 Missense_Mutation p.R890C 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 2 20490544 20490544 C T PUM2 Missense_Mutation p.R387H 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-5M-AAT6-01 2 20840430 20840430 C T HS1BP3 Intron 0.13 TCGA-5M-AAT6-01 2 209138426 209138426 T C PIKFYVE Silent p.N97N 0.14 TCGA-5M-AAT6-01 2 211018375 211018375 T - KANSL1L Frame_Shift_Del p.N311Mfs*63 0.13 TCGA-5M-AAT6-01 2 211057549 211057549 A G ACADL Missense_Mutation p.M393T 0.16 deleterious(0.01) probably_damaging(0.978) TCGA-5M-AAT6-01 2 212248283 212248283 G - ERBB4 3'UTR 0.19 TCGA-5M-AAT6-01 2 21227203 21227203 C T APOB Missense_Mutation p.V4009M 0.16 benign(0.01) TCGA-5M-AAT6-01 2 21231495 21231495 T C APOB Missense_Mutation p.T2749A 0.11 benign(0.018) TCGA-5M-AAT6-01 2 21252886 21252886 A T APOB Missense_Mutation p.Y452N 0.11 probably_damaging(0.999) TCGA-5M-AAT6-01 2 215882829 215882829 A G ABCA12 Missense_Mutation p.V562A 0.07 tolerated(0.29) benign(0.04) TCGA-5M-AAT6-01 2 216213892 216213892 T C ATIC Missense_Mutation p.W527R 0.12 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 2 216243958 216243958 C T FN1 Silent p.Q1839Q 0.19 TCGA-5M-AAT6-01 2 219251364 219251364 C T SLC11A1 Missense_Mutation p.R134C 0.13 deleterious(0) probably_damaging(0.932) TCGA-5M-AAT6-01 2 219292781 219292781 C T VIL1 Silent p.N147N 0.12 TCGA-5M-AAT6-01 2 219483346 219483346 G A PLCD4 Missense_Mutation p.E76K 0.06 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 2 220286087 220286087 G A DES Missense_Mutation p.R350Q 0.16 tolerated(0.09) possibly_damaging(0.473) TCGA-5M-AAT6-01 2 220379700 220379700 C T ASIC4 Missense_Mutation p.A212V 0.16 tolerated(0.78) benign(0.239) TCGA-5M-AAT6-01 2 220402026 220402026 C A ASIC4 Missense_Mutation p.L570I 0.21 tolerated(0.14) possibly_damaging(0.718) TCGA-5M-AAT6-01 2 220420768 220420768 C T OBSL1 Missense_Mutation p.R1528H 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-5M-AAT6-01 2 220434992 220434992 C T OBSL1 Silent p.A321A 0.16 TCGA-5M-AAT6-01 2 223919546 223919546 A - KCNE4 3'UTR 0.12 TCGA-5M-AAT6-01 2 225365164 225365164 G A CUL3 Missense_Mutation p.T509M 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 2 225695262 225695262 A C DOCK10 Missense_Mutation p.I1011S 0.03 deleterious(0) benign(0.103) TCGA-5M-AAT6-01 2 230675594 230675594 A G TRIP12 Splice_Site p.X693_splice 0.16 TCGA-5M-AAT6-01 2 232323015 232323015 C T NCL Silent p.A417A 0.14 TCGA-5M-AAT6-01 2 232576596 232576596 G A PTMA Splice_Site p.X40_splice 0.10 TCGA-5M-AAT6-01 2 233635798 233635798 G - KCNJ13 Frame_Shift_Del p.P92Hfs*53 0.14 TCGA-5M-AAT6-01 2 234255607 234255607 C T SAG 3'UTR 0.13 TCGA-5M-AAT6-01 2 234401889 234401889 G A USP40 Intron 0.20 TCGA-5M-AAT6-01 2 234581344 234581344 C T UGT1A9 Missense_Mutation p.T255M 0.18 tolerated(0.15) benign(0.054) TCGA-5M-AAT6-01 2 234741833 234741833 C A MROH2A Silent p.A1651A 0.11 TCGA-5M-AAT6-01 2 237489447 237489447 C T ACKR3 Silent p.G113G 0.13 TCGA-5M-AAT6-01 2 238628179 238628179 G A LRRFIP1 Missense_Mutation p.R56H 0.17 deleterious(0) benign(0.126) TCGA-5M-AAT6-01 2 238672372 238672372 T G LRRFIP1 Silent p.A672A 0.15 TCGA-5M-AAT6-01 2 239009303 239009303 C T ESPNL Silent p.G81G 0.10 TCGA-5M-AAT6-01 2 239161752 239161752 G T PER2 Nonsense_Mutation p.S971* 0.12 TCGA-5M-AAT6-01 2 239757193 239757193 T C TWIST2 Missense_Mutation p.Y113H 0.15 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 2 242075412 242075412 G T PASK Missense_Mutation p.L394I 0.11 tolerated(0.08) benign(0.377) TCGA-5M-AAT6-01 2 242437703 242437703 G A STK25 Missense_Mutation p.P327S 0.09 tolerated(0.12) benign(0.004) TCGA-5M-AAT6-01 2 242815356 242815356 T C CXXC11 Missense_Mutation p.M550T 0.12 tolerated(0.11) benign(0) TCGA-5M-AAT6-01 2 24395642 24395642 G A FAM228A 5'Flank 0.17 TCGA-5M-AAT6-01 2 25355785 25355785 C T EFR3B Silent p.S387S 0.16 TCGA-5M-AAT6-01 2 25463286 25463286 C T DNMT3A Missense_Mutation p.R736H 0.14 tolerated(0.39) probably_damaging(1) TCGA-5M-AAT6-01 2 25536938 25536938 C T DNMT3A 5'UTR 0.14 TCGA-5M-AAT6-01 2 26203284 26203284 C T KIF3C Silent p.R501R 0.19 TCGA-5M-AAT6-01 2 26679335 26679335 T C DRC1 Missense_Mutation p.S725P 0.12 deleterious(0.05) benign(0.06) TCGA-5M-AAT6-01 2 27259386 27259386 G A TMEM214 Missense_Mutation p.R251Q 0.18 deleterious(0) possibly_damaging(0.857) TCGA-5M-AAT6-01 2 27322468 27322468 A - CGREF1 3'Flank 0.10 TCGA-5M-AAT6-01 2 27354224 27354224 T C PREB 3'UTR 0.14 TCGA-5M-AAT6-01 2 275179 275179 T C ACP1 Missense_Mutation p.C91R 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-5M-AAT6-01 2 27684357 27684357 G A IFT172 Missense_Mutation p.R741C 0.11 deleterious(0.02) possibly_damaging(0.827) TCGA-5M-AAT6-01 2 29258494 29258494 C T FAM179A Missense_Mutation p.T797M 0.10 deleterious(0) benign(0.11) TCGA-5M-AAT6-01 2 29416647 29416647 G A ALK Missense_Mutation p.R1436C 0.12 tolerated(0.07) benign(0.001) TCGA-5M-AAT6-01 2 29456505 29456505 T C ALK Missense_Mutation p.I805V 0.13 tolerated(0.26) benign(0.244) TCGA-5M-AAT6-01 2 31155033 31155033 C A GALNT14 Missense_Mutation p.G325V 0.12 deleterious(0) probably_damaging(0.912) TCGA-5M-AAT6-01 2 33586560 33586560 A G LTBP1 Silent p.E1416E 0.13 TCGA-5M-AAT6-01 2 37543705 37543705 T - PRKD3 5'UTR 0.09 TCGA-5M-AAT6-01 2 37596875 37596875 T C QPCT Silent p.F257F 0.12 TCGA-5M-AAT6-01 2 38523298 38523298 A - ATL2 Intron 0.19 TCGA-5M-AAT6-01 2 38973319 38973319 C T SRSF7 Missense_Mutation p.R210Q 0.14 deleterious(0.03) unknown(0) TCGA-5M-AAT6-01 2 39931278 39931278 G A TMEM178A Missense_Mutation p.R153Q 0.13 deleterious(0.01) possibly_damaging(0.87) TCGA-5M-AAT6-01 2 40404988 40404988 T C SLC8A1 Intron 0.21 TCGA-5M-AAT6-01 2 42488302 42488302 A - EML4 Frame_Shift_Del p.E130Rfs*43 0.15 TCGA-5M-AAT6-01 2 45236035 45236035 C A SIX2 Missense_Mutation p.S72I 0.22 deleterious(0) possibly_damaging(0.661) TCGA-5M-AAT6-01 2 45652 45652 G A FAM110C Missense_Mutation p.T245I 0.15 deleterious(0.01) benign(0.34) TCGA-5M-AAT6-01 2 47703590 47703590 G A MSH2 Missense_Mutation p.C697Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 2 48915172 48915172 A - LHCGR Frame_Shift_Del p.F588Lfs*14 0.10 TCGA-5M-AAT6-01 2 50733680 50733680 C T NRXN1 Missense_Mutation p.R857H 0.16 deleterious(0) probably_damaging(0.986) TCGA-5M-AAT6-01 2 54482951 54482951 T - TSPYL6 Frame_Shift_Del p.N113Mfs*11 0.16 TCGA-5M-AAT6-01 2 54873376 54873376 A G SPTBN1 Missense_Mutation p.I1544V 0.18 tolerated(1) benign(0.057) TCGA-5M-AAT6-01 2 54895636 54895636 C T SPTBN1 Missense_Mutation p.P2342L 0.15 tolerated(0.65) benign(0.114) TCGA-5M-AAT6-01 2 55186337 55186337 G A EML6 Missense_Mutation p.V1598M 0.15 deleterious(0) probably_damaging(0.941) TCGA-5M-AAT6-01 2 55523554 55523554 T C CCDC88A Missense_Mutation p.Q1643R 0.15 tolerated(0.55) benign(0.363) TCGA-5M-AAT6-01 2 5837110 5837110 C T SOX11 3'UTR 0.10 TCGA-5M-AAT6-01 2 5838033 5838033 T C SOX11 3'UTR 0.11 TCGA-5M-AAT6-01 2 60688460 60688460 C T BCL11A Silent p.S529S 0.13 TCGA-5M-AAT6-01 2 60987292 60987292 G A PAPOLG Missense_Mutation p.R14H 0.13 deleterious(0.02) benign(0.002) TCGA-5M-AAT6-01 2 61169314 61169314 A - PUS10 3'UTR 0.18 TCGA-5M-AAT6-01 2 61541731 61541731 C T USP34 Silent p.A1177A 0.13 TCGA-5M-AAT6-01 2 64160951 64160951 A G VPS54 Missense_Mutation p.V532A 0.15 tolerated(0.59) benign(0) TCGA-5M-AAT6-01 2 64779539 64779539 A G AFTPH Missense_Mutation p.S311G 0.18 tolerated(0.09) benign(0.007) TCGA-5M-AAT6-01 2 64863673 64863673 C T SERTAD2 Silent p.A111A 0.15 TCGA-5M-AAT6-01 2 65299146 65299146 A G CEP68 Missense_Mutation p.T306A 0.10 tolerated(0.18) probably_damaging(0.966) TCGA-5M-AAT6-01 2 69723204 69723204 T - AAK1 Frame_Shift_Del p.R760Gfs*14 0.21 TCGA-5M-AAT6-01 2 6991803 6991803 C T CMPK2 Missense_Mutation p.S335N 0.12 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 2 70504465 70504465 G A PCYOX1 Missense_Mutation p.G487R 0.12 tolerated(0.22) benign(0.036) TCGA-5M-AAT6-01 2 70692857 70692857 C T TGFA Missense_Mutation p.V36M 0.14 tolerated(0.11) benign(0.007) TCGA-5M-AAT6-01 2 71047716 71047716 G A CLEC4F 5'UTR 0.23 TCGA-5M-AAT6-01 2 71305600 71305600 G A NAGK Missense_Mutation p.A379T 0.22 tolerated(0.59) benign(0.001) TCGA-5M-AAT6-01 2 71305702 71305703 TT - NAGK 3'UTR 0.14 TCGA-5M-AAT6-01 2 71801459 71801460 - A DYSF Frame_Shift_Ins p.T1122Dfs*10 0.09 TCGA-5M-AAT6-01 2 73678982 73678982 T C ALMS1 Silent p.S1775S 0.10 TCGA-5M-AAT6-01 2 74315113 74315113 A G TET3 Missense_Mutation p.T811A 0.14 deleterious(0) possibly_damaging(0.696) TCGA-5M-AAT6-01 2 74328436 74328436 G A TET3 Silent p.R1372R 0.07 TCGA-5M-AAT6-01 2 74329026 74329026 A G TET3 Missense_Mutation p.H1569R 0.07 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 2 74605228 74605228 C T DCTN1 Missense_Mutation p.V60M 0.08 deleterious(0) probably_damaging(0.976) TCGA-5M-AAT6-01 2 74643288 74643288 C T C2orf81 Silent p.P36P 0.15 TCGA-5M-AAT6-01 2 74652006 74652006 G A WDR54 Missense_Mutation p.C180Y 0.12 tolerated(0.52) benign(0.002) TCGA-5M-AAT6-01 2 74742219 74742219 G - TLX2 Frame_Shift_Del p.A98Rfs*16 0.11 TCGA-5M-AAT6-01 2 74757503 74757503 G - HTRA2 Frame_Shift_Del p.G125Vfs*84 0.13 TCGA-5M-AAT6-01 2 74782441 74782441 C T DOK1 Missense_Mutation p.A74V 0.11 tolerated(1) benign(0.001) TCGA-5M-AAT6-01 2 80530030 80530030 G A LRRTM1 Silent p.S305S 0.15 TCGA-5M-AAT6-01 2 80540733 80540733 A - CTNNA2 Intron 0.14 TCGA-5M-AAT6-01 2 80808862 80808862 T C CTNNA2 Missense_Mutation p.F642S 0.10 deleterious(0.03) benign(0.34) TCGA-5M-AAT6-01 2 84771599 84771599 A - DNAH6 Frame_Shift_Del p.N304Ifs*16 0.17 TCGA-5M-AAT6-01 2 84928380 84928380 T C DNAH6 Missense_Mutation p.Y2660H 0.06 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 2 85014330 85014330 G A DNAH6 Missense_Mutation p.E3715K 0.13 deleterious(0) probably_damaging(0.964) TCGA-5M-AAT6-01 2 85065217 85065217 C T TRABD2A Intron 0.11 TCGA-5M-AAT6-01 2 85824625 85824625 T C RNF181 Nonstop_Mutation p.*154Rext*5 0.12 TCGA-5M-AAT6-01 2 85826182 85826182 G A TMEM150A 3'UTR 0.22 TCGA-5M-AAT6-01 2 86258581 86258581 G T POLR1A Silent p.R1484R 0.14 TCGA-5M-AAT6-01 2 86260808 86260808 G A POLR1A Silent p.N1379N 0.13 TCGA-5M-AAT6-01 2 88390640 88390640 C T SMYD1 Missense_Mutation p.T213I 0.11 tolerated(0.09) possibly_damaging(0.883) TCGA-5M-AAT6-01 2 88857312 88857312 G A EIF2AK3 Missense_Mutation p.S1098L 0.08 deleterious(0) possibly_damaging(0.639) TCGA-5M-AAT6-01 2 8891737 8891737 G A KIDINS220 Missense_Mutation p.P1017S 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-5M-AAT6-01 2 9000853 9000853 T C MBOAT2 Silent p.Q409Q 0.11 TCGA-5M-AAT6-01 2 96697880 96697880 C T GPAT2 Silent p.S26S 0.11 TCGA-5M-AAT6-01 2 96789637 96789637 T C ASTL Silent p.P416P 0.06 TCGA-5M-AAT6-01 2 96961377 96961377 A G SNRNP200 Missense_Mutation p.I564T 0.07 deleterious(0) possibly_damaging(0.899) TCGA-5M-AAT6-01 2 97270525 97270525 G A KANSL3 Missense_Mutation p.T670I 0.15 deleterious_low_confidence(0) benign(0.107) TCGA-5M-AAT6-01 2 97370598 97370598 T C LMAN2L 3'Flank 0.12 TCGA-5M-AAT6-01 2 97626163 97626163 T - FAM178B Frame_Shift_Del p.K250Sfs*35 0.11 TCGA-5M-AAT6-01 2 98453571 98453571 G A TMEM131 Missense_Mutation p.T258M 0.14 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 2 99909019 99909019 C T LYG1 Missense_Mutation p.R43H 0.13 tolerated(0.06) benign(0.027) TCGA-5M-AAT6-01 3 10081648 10081648 C A FANCD2 Intron 0.16 TCGA-5M-AAT6-01 3 101540357 101540357 C A NXPE3 Silent p.R413R 0.13 TCGA-5M-AAT6-01 3 102171879 102171879 G - ZPLD1 Frame_Shift_Del p.D92Tfs*52 0.12 TCGA-5M-AAT6-01 3 108818240 108818240 A - MORC1 Frame_Shift_Del p.S130Lfs*14 0.15 TCGA-5M-AAT6-01 3 10885923 10885923 C T SLC6A11 Silent p.D216D 0.09 TCGA-5M-AAT6-01 3 111261102 111261102 A - CD96 Frame_Shift_Del p.K4Nfs*40 0.13 TCGA-5M-AAT6-01 3 111603085 111603085 A G PHLDB2 Missense_Mutation p.D54G 0.10 deleterious_low_confidence(0) possibly_damaging(0.574) TCGA-5M-AAT6-01 3 113098206 113098207 - G WDR52 Frame_Shift_Ins p.S749Lfs*22 0.12 TCGA-5M-AAT6-01 3 113138965 113138965 C T WDR52 Missense_Mutation p.A157T 0.07 deleterious(0.01) benign(0.029) TCGA-5M-AAT6-01 3 113172362 113172363 - C SPICE1 Frame_Shift_Ins p.D698Gfs*14 0.09 TCGA-5M-AAT6-01 3 113858394 113858394 G A DRD3 Nonsense_Mutation p.R226* 0.10 TCGA-5M-AAT6-01 3 115439743 115439743 G A GAP43 3'UTR 0.11 TCGA-5M-AAT6-01 3 119120992 119120992 G A ARHGAP31 Missense_Mutation p.V465I 0.16 tolerated(0.07) benign(0.026) TCGA-5M-AAT6-01 3 119469792 119469792 G A MAATS1 Missense_Mutation p.A718T 0.12 tolerated(0.38) benign(0.026) TCGA-5M-AAT6-01 3 121134725 121134725 A G STXBP5L Missense_Mutation p.T1070A 0.13 tolerated(0.23) possibly_damaging(0.524) TCGA-5M-AAT6-01 3 122259327 122259327 C T PARP9 Missense_Mutation p.R621H 0.12 tolerated(0.48) benign(0.007) TCGA-5M-AAT6-01 3 122345823 122345823 A - PARP15 Frame_Shift_Del p.R463Efs*7 0.16 TCGA-5M-AAT6-01 3 122419597 122419597 G A PARP14 Silent p.K732K 0.13 TCGA-5M-AAT6-01 3 123983424 123983424 A - KALRN Frame_Shift_Del p.T114Rfs*55 0.13 TCGA-5M-AAT6-01 3 124807190 124807190 A - SLC12A8 Frame_Shift_Del p.F649Sfs*4 0.14 TCGA-5M-AAT6-01 3 124826788 124826788 C T SLC12A8 Silent p.P414P 0.11 TCGA-5M-AAT6-01 3 125872411 125872411 A - ALDH1L1 Frame_Shift_Del p.F255Sfs*5 0.14 TCGA-5M-AAT6-01 3 126062636 126062636 G A KLF15 Silent p.H395H 0.14 TCGA-5M-AAT6-01 3 126142410 126142410 G A CCDC37 Silent p.S403S 0.14 TCGA-5M-AAT6-01 3 126748756 126748756 G A PLXNA1 Missense_Mutation p.R1637H 0.13 tolerated(0.1) probably_damaging(1) TCGA-5M-AAT6-01 3 127379772 127379772 G A PODXL2 Missense_Mutation p.E301K 0.14 tolerated(0.52) benign(0.023) TCGA-5M-AAT6-01 3 127429498 127429498 G A MGLL Missense_Mutation p.A174V 0.13 deleterious(0.01) benign(0.038) TCGA-5M-AAT6-01 3 128628803 128628803 G T RP11-723O4.6 3'UTR 0.12 TCGA-5M-AAT6-01 3 128853674 128853674 C T ISY1 Splice_Site p.X203_splice 0.10 TCGA-5M-AAT6-01 3 128984496 128984496 C T COPG1 Silent p.I443I 0.20 TCGA-5M-AAT6-01 3 129279190 129279190 G A PLXND1 Missense_Mutation p.R1706C 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-5M-AAT6-01 3 129294392 129294392 C T PLXND1 Missense_Mutation p.R817Q 0.15 tolerated(1) benign(0) TCGA-5M-AAT6-01 3 129370614 129370614 G A TMCC1 Missense_Mutation p.R558C 0.12 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 3 130110250 130110250 G A COL6A5 Missense_Mutation p.R882Q 0.12 tolerated(1) benign(0.011) TCGA-5M-AAT6-01 3 130114005 130114005 A - COL6A5 Frame_Shift_Del p.V1091* 0.14 TCGA-5M-AAT6-01 3 132166251 132166251 A G DNAJC13 Silent p.G77G 0.03 TCGA-5M-AAT6-01 3 132215470 132215470 A - DNAJC13 Frame_Shift_Del p.T1375Hfs*28 0.14 TCGA-5M-AAT6-01 3 133347225 133347225 A G TOPBP1 Missense_Mutation p.S929P 0.08 deleterious(0.01) probably_damaging(0.949) TCGA-5M-AAT6-01 3 133347264 133347265 - T TOPBP1 Frame_Shift_Ins p.L916Tfs*3 0.14 TCGA-5M-AAT6-01 3 133467351 133467351 A G TF Missense_Mutation p.S47G 0.14 tolerated(0.15) benign(0.007) TCGA-5M-AAT6-01 3 13438890 13438890 G - NUP210 Frame_Shift_Del p.L135Wfs*3 0.15 TCGA-5M-AAT6-01 3 135721069 135721069 A - PPP2R3A Frame_Shift_Del p.K245Nfs*6 0.13 TCGA-5M-AAT6-01 3 13612536 13612536 C - FBLN2 Frame_Shift_Del p.P229Qfs*45 0.09 TCGA-5M-AAT6-01 3 138193127 138193127 A C ESYT3 Silent p.R801R 0.19 TCGA-5M-AAT6-01 3 138195072 138195072 T - ESYT3 Frame_Shift_Del p.F827Lfs*7 0.12 TCGA-5M-AAT6-01 3 140401661 140401661 C T TRIM42 Silent p.S233S 0.10 TCGA-5M-AAT6-01 3 142051892 142051892 T C XRN1 Missense_Mutation p.I1327V 0.16 tolerated_low_confidence(0.19) benign(0.021) TCGA-5M-AAT6-01 3 142537130 142537130 T C PCOLCE2 3'UTR 0.15 TCGA-5M-AAT6-01 3 14535272 14535272 C T SLC6A6 3'Flank 0.13 TCGA-5M-AAT6-01 3 150416579 150416579 C T FAM194A Silent p.S184S 0.09 TCGA-5M-AAT6-01 3 150421285 150421285 T G FAM194A Missense_Mutation p.K134T 0.16 deleterious(0.04) benign(0.382) TCGA-5M-AAT6-01 3 15300442 15300442 C T SH3BP5 Missense_Mutation p.R262H 0.10 deleterious(0.03) benign(0.135) TCGA-5M-AAT6-01 3 155200688 155200688 C T PLCH1 Missense_Mutation p.V1051I 0.05 tolerated_low_confidence(0.76) benign(0.001) TCGA-5M-AAT6-01 3 156877727 156877728 - AA CCNL1 Frame_Shift_Ins p.T53Lfs*7 0.09 TCGA-5M-AAT6-01 3 158390167 158390167 A G LXN Missense_Mutation p.V34A 0.08 deleterious(0.01) possibly_damaging(0.577) TCGA-5M-AAT6-01 3 160025566 160025566 G A IFT80 Missense_Mutation p.R321C 0.13 deleterious(0) possibly_damaging(0.847) TCGA-5M-AAT6-01 3 169940437 169940437 T C PRKCI 5'UTR 0.17 TCGA-5M-AAT6-01 3 172052789 172052789 C T FNDC3B Missense_Mutation p.T566M 0.15 deleterious(0.01) possibly_damaging(0.524) TCGA-5M-AAT6-01 3 172070729 172070729 C T FNDC3B Missense_Mutation p.A884V 0.11 tolerated(0.25) benign(0.001) TCGA-5M-AAT6-01 3 183439719 183439719 C A YEATS2 Missense_Mutation p.A111D 0.12 deleterious(0) benign(0.382) TCGA-5M-AAT6-01 3 183908977 183908977 C T ABCF3 Silent p.Y501Y 0.17 TCGA-5M-AAT6-01 3 184046499 184046499 C T EIF4G1 Missense_Mutation p.T1352I 0.09 deleterious(0) probably_damaging(0.956) TCGA-5M-AAT6-01 3 184070896 184070896 C - CLCN2 Frame_Shift_Del p.E690Rfs*6 0.15 TCGA-5M-AAT6-01 3 184801072 184801072 G T C3orf70 Missense_Mutation p.P159H 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-5M-AAT6-01 3 186917442 186917442 C T RTP1 Missense_Mutation p.R126C 0.18 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 3 189597920 189597920 G A TP63 Intron 0.20 TCGA-5M-AAT6-01 3 190158077 190158077 C T TMEM207 Missense_Mutation p.R87H 0.16 tolerated(0.11) benign(0.008) TCGA-5M-AAT6-01 3 194061899 194061899 G T CPN2 Silent p.G511G 0.20 TCGA-5M-AAT6-01 3 194134544 194134544 G A ATP13A3 Missense_Mutation p.R1143C 0.16 deleterious(0) probably_damaging(0.915) TCGA-5M-AAT6-01 3 194167727 194167727 T - ATP13A3 Frame_Shift_Del p.I476Sfs*11 0.14 TCGA-5M-AAT6-01 3 194349148 194349148 G A TMEM44 Silent p.T76T 0.13 TCGA-5M-AAT6-01 3 195513466 195513466 G A MUC4 Missense_Mutation p.A1662V 0.09 benign(0.035) TCGA-5M-AAT6-01 3 195599148 195599148 C T TNK2 Missense_Mutation p.E547K 0.15 deleterious(0.03) possibly_damaging(0.674) TCGA-5M-AAT6-01 3 196199386 196199386 C T RNF168 Silent p.S340S 0.15 TCGA-5M-AAT6-01 3 196612746 196612746 A G SENP5 Missense_Mutation p.M232V 0.17 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-5M-AAT6-01 3 197348608 197348608 G A AC024560.3 RNA 0.17 TCGA-5M-AAT6-01 3 197794358 197794358 T C RNU6-821P 3'Flank 0.09 TCGA-5M-AAT6-01 3 24231711 24231711 C T THRB Missense_Mutation p.R46H 0.13 deleterious_low_confidence(0.03) benign(0) TCGA-5M-AAT6-01 3 25639710 25639710 A T TOP2B 3'UTR 0.10 TCGA-5M-AAT6-01 3 29476321 29476321 G T RBMS3 Missense_Mutation p.G55W 0.16 tolerated(0.27) probably_damaging(0.969) TCGA-5M-AAT6-01 3 3084709 3084709 C T CNTN4 Nonsense_Mutation p.R854* 0.12 TCGA-5M-AAT6-01 3 33626275 33626275 T A CLASP2 Missense_Mutation p.S737C 0.10 deleterious(0) probably_damaging(0.991) TCGA-5M-AAT6-01 3 33907885 33907885 G A PDCD6IP Silent p.A830A 0.11 TCGA-5M-AAT6-01 3 38417648 38417648 G A XYLB Missense_Mutation p.E349K 0.12 tolerated(0.22) benign(0.036) TCGA-5M-AAT6-01 3 38791614 38791614 C T SCN10A Missense_Mutation p.R606Q 0.11 tolerated(0.76) benign(0.004) TCGA-5M-AAT6-01 3 39453518 39453518 G T RPSA Missense_Mutation p.Q253H 0.12 deleterious(0.01) possibly_damaging(0.469) TCGA-5M-AAT6-01 3 403422 403422 C T CHL1 Silent p.Y449Y 0.10 TCGA-5M-AAT6-01 3 42917341 42917341 G A CYP8B1 5'UTR 0.07 TCGA-5M-AAT6-01 3 43075016 43075016 C T FAM198A Missense_Mutation p.R421C 0.12 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 3 43097810 43097810 C T FAM198A Nonsense_Mutation p.R554* 0.15 TCGA-5M-AAT6-01 3 44959625 44959625 C T TGM4 3'Flank 0.25 TCGA-5M-AAT6-01 3 46306948 46306948 T - CCR3 Frame_Shift_Del p.F122Lfs*24 0.10 TCGA-5M-AAT6-01 3 47451020 47451020 C T PTPN23 Silent p.Y637Y 0.14 TCGA-5M-AAT6-01 3 47453098 47453098 T C PTPN23 Silent p.A1270A 0.10 TCGA-5M-AAT6-01 3 47618849 47618849 C T CSPG5 Missense_Mutation p.A223T 0.14 tolerated_low_confidence(0.09) benign(0.069) TCGA-5M-AAT6-01 3 4821239 4821239 T C ITPR1 Silent p.N2084N 0.14 TCGA-5M-AAT6-01 3 49142125 49142125 G A QARS Silent p.G14G 0.12 TCGA-5M-AAT6-01 3 49145822 49145822 C - USP19 3'Flank 0.18 TCGA-5M-AAT6-01 3 49152447 49152447 C T USP19 Missense_Mutation p.R707H 0.14 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 3 49160696 49160696 G A LAMB2 Missense_Mutation p.R1365W 0.15 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 3 49211691 49211691 G - KLHDC8B Frame_Shift_Del p.G134Efs*56 0.15 TCGA-5M-AAT6-01 3 49755648 49755648 G A AMIGO3 Silent p.R417R 0.13 TCGA-5M-AAT6-01 3 50154632 50154632 G A RBM5 Intron 0.12 TCGA-5M-AAT6-01 3 50289867 50289867 G A GNAI2 Missense_Mutation p.R67Q 0.09 tolerated(0.39) benign(0.086) TCGA-5M-AAT6-01 3 50330630 50330630 A - HYAL3 3'UTR 0.12 TCGA-5M-AAT6-01 3 50355737 50355737 C T HYAL2 Nonsense_Mutation p.W415* 0.17 TCGA-5M-AAT6-01 3 52014568 52014568 A G ABHD14A Missense_Mutation p.H186R 0.11 tolerated(0.38) benign(0.002) TCGA-5M-AAT6-01 3 52395769 52395769 C T DNAH1 Missense_Mutation p.A1656V 0.19 probably_damaging(0.999) TCGA-5M-AAT6-01 3 52476923 52476923 T C SEMA3G Missense_Mutation p.D39G 0.18 deleterious(0) possibly_damaging(0.759) TCGA-5M-AAT6-01 3 52523559 52523559 G A NISCH Silent p.P1107P 0.21 TCGA-5M-AAT6-01 3 52537832 52537832 C T STAB1 Silent p.N312N 0.15 TCGA-5M-AAT6-01 3 52556926 52556926 C T STAB1 Missense_Mutation p.R2294C 0.17 deleterious(0.04) benign(0.017) TCGA-5M-AAT6-01 3 52651370 52651370 G A PBRM1 Missense_Mutation p.R576C 0.11 deleterious(0) probably_damaging(0.937) TCGA-5M-AAT6-01 3 54798287 54798287 A G CACNA2D3 Missense_Mutation p.N430S 0.06 deleterious(0.03) probably_damaging(0.967) TCGA-5M-AAT6-01 3 57132449 57132449 A G IL17RD Missense_Mutation p.Y428H 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-5M-AAT6-01 3 57356385 57356385 G A DNAH12 Missense_Mutation p.R269C 0.15 deleterious(0.02) benign(0.311) TCGA-5M-AAT6-01 3 57443646 57443646 T - DNAH12 Frame_Shift_Del p.K1023Nfs*9 0.11 TCGA-5M-AAT6-01 3 58155460 58155460 G A FLNB Missense_Mutation p.G2552R 0.15 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 3 62522118 62522118 G A CADPS Splice_Site p.X701_splice 0.13 TCGA-5M-AAT6-01 3 63601220 63601220 T - SYNPR 3'UTR 0.13 TCGA-5M-AAT6-01 3 73111542 73111542 A - EBLN2 Frame_Shift_Del p.A106Qfs*6 0.10 TCGA-5M-AAT6-01 3 73114559 73114559 A G PPP4R2 Missense_Mutation p.T314A 0.19 deleterious(0.04) benign(0.009) TCGA-5M-AAT6-01 3 77607298 77607298 C T ROBO2 Missense_Mutation p.R495W 0.12 deleterious(0.01) possibly_damaging(0.898) TCGA-5M-AAT6-01 3 78684995 78684995 G A ROBO1 Missense_Mutation p.P1101S 0.14 tolerated(0.58) benign(0.036) TCGA-5M-AAT6-01 3 93780392 93780392 C T DHFRL1 5'UTR 0.12 TCGA-5M-AAT6-01 3 9515149 9515149 C T SETD5 Missense_Mutation p.A1142V 0.15 deleterious(0.02) benign(0.163) TCGA-5M-AAT6-01 3 9871045 9871045 G A TTLL3 Missense_Mutation p.C650Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-5M-AAT6-01 3 99513702 99513702 C T COL8A1 Silent p.G319G 0.13 TCGA-5M-AAT6-01 3 9975205 9975206 - C IL17RC Frame_Shift_Ins p.T772Dfs*? 0.17 TCGA-5M-AAT6-01 3 9982688 9982688 C T CRELD1 Silent p.N205N 0.17 TCGA-5M-AAT6-01 4 100510852 100510852 A G MTTP Missense_Mutation p.K149R 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-5M-AAT6-01 4 101401077 101401077 T C EMCN Missense_Mutation p.K62E 0.09 tolerated(0.31) possibly_damaging(0.874) TCGA-5M-AAT6-01 4 102951317 102951317 A - BANK1 Frame_Shift_Del p.T601Lfs*8 0.16 TCGA-5M-AAT6-01 4 104065613 104065613 G C CENPE Missense_Mutation p.L1674V 0.18 possibly_damaging(0.608) TCGA-5M-AAT6-01 4 106162284 106162284 T - TET2 Intron 0.11 TCGA-5M-AAT6-01 4 111397925 111397925 G A ENPEP Missense_Mutation p.V119M 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-5M-AAT6-01 4 113352517 113352517 G T ALPK1 Missense_Mutation p.R605M 0.17 tolerated(0.14) benign(0.005) TCGA-5M-AAT6-01 4 113539015 113539015 A - C4orf21 Frame_Shift_Del p.L728Yfs*14 0.13 TCGA-5M-AAT6-01 4 114275927 114275927 A G ANK2 Silent p.K2051K 0.03 TCGA-5M-AAT6-01 4 1165152 1165152 C - SPON2 Frame_Shift_Del p.E115Rfs*96 0.10 TCGA-5M-AAT6-01 4 120181009 120181009 C T USP53 Missense_Mutation p.R202C 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-5M-AAT6-01 4 123192397 123192397 G A KIAA1109 Missense_Mutation p.R2573H 0.12 probably_damaging(0.996) TCGA-5M-AAT6-01 4 124324151 124324151 A G SPRY1 3'UTR 0.18 TCGA-5M-AAT6-01 4 1389048 1389048 G A CRIPAK Missense_Mutation p.R250H 0.11 tolerated(0.43) benign(0.238) TCGA-5M-AAT6-01 4 139983034 139983034 A C ELF2 Missense_Mutation p.M252R 0.17 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 4 141300756 141300756 A - SCOC Frame_Shift_Del p.T98Qfs*21 0.13 TCGA-5M-AAT6-01 4 141488948 141488948 T C UCP1 Missense_Mutation p.T104A 0.12 tolerated(0.2) benign(0.001) TCGA-5M-AAT6-01 4 148554116 148554116 A G TMEM184C Missense_Mutation p.E281G 0.14 tolerated(0.26) benign(0.002) TCGA-5M-AAT6-01 4 149075996 149075996 G A NR3C2 Nonsense_Mutation p.Q691* 0.08 TCGA-5M-AAT6-01 4 151000113 151000113 T C DCLK2 5'Flank 0.16 TCGA-5M-AAT6-01 4 153690520 153690520 T - TIGD4 3'UTR 0.15 TCGA-5M-AAT6-01 4 153831494 153831494 A C ARFIP1 3'UTR 0.11 TCGA-5M-AAT6-01 4 153896300 153896300 G A FHDC1 Silent p.A619A 0.20 TCGA-5M-AAT6-01 4 15444202 15444202 C T C1QTNF7 Missense_Mutation p.R224W 0.18 deleterious(0.03) probably_damaging(0.991) TCGA-5M-AAT6-01 4 155157962 155157962 G A DCHS2 Silent p.V2159V 0.11 TCGA-5M-AAT6-01 4 155749094 155749094 G A RBM46 Missense_Mutation p.V493M 0.08 tolerated(0.11) benign(0.001) TCGA-5M-AAT6-01 4 156858576 156858576 G A CTSO Silent p.C204C 0.13 TCGA-5M-AAT6-01 4 159590666 159590666 G T C4orf46 3'UTR 0.17 TCGA-5M-AAT6-01 4 1659136 1659136 G A FAM53A Silent p.N45N 0.17 TCGA-5M-AAT6-01 4 166408731 166408731 T C CPE Splice_Site p.X371_splice 0.11 TCGA-5M-AAT6-01 4 169195175 169195175 G T DDX60 Silent p.S788S 0.13 TCGA-5M-AAT6-01 4 169317271 169317287 TAGTGCTACTATTTAAA AGTGCTATTATTT DDX60L Splice_Site p.X1164_splice 0.12 TCGA-5M-AAT6-01 4 170913140 170913140 G A MFAP3L Missense_Mutation p.R207C 0.12 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 4 174450476 174450476 C T HAND2 5'UTR 0.42 TCGA-5M-AAT6-01 4 175598405 175598405 G A GLRA3 Nonsense_Mutation p.R251* 0.15 TCGA-5M-AAT6-01 4 177608567 177608567 G A VEGFC Missense_Mutation p.H307Y 0.08 tolerated(0.28) benign(0.009) TCGA-5M-AAT6-01 4 178283541 178283541 G A NEIL3 Silent p.V578V 0.12 TCGA-5M-AAT6-01 4 183721165 183721165 C T TENM3 Silent p.N2587N 0.11 TCGA-5M-AAT6-01 4 184166576 184166576 A - WWC2 Frame_Shift_Del p.M206Cfs*17 0.12 TCGA-5M-AAT6-01 4 184603963 184603963 C T TRAPPC11 Nonsense_Mutation p.R398* 0.10 TCGA-5M-AAT6-01 4 186598179 186598179 G A SORBS2 Intron 0.11 TCGA-5M-AAT6-01 4 187073066 187073066 G A FAM149A 5'UTR 0.14 TCGA-5M-AAT6-01 4 187088345 187088345 C T FAM149A Missense_Mutation p.T435M 0.11 tolerated(0.08) benign(0.284) TCGA-5M-AAT6-01 4 187510249 187510249 T C FAT1 Missense_Mutation p.T4422A 0.20 benign(0.033) TCGA-5M-AAT6-01 4 187541860 187541860 G A FAT1 Silent p.A1960A 0.08 TCGA-5M-AAT6-01 4 1980668 1980668 C T WHSC1 3'UTR 0.15 TCGA-5M-AAT6-01 4 2341273 2341273 C T ZFYVE28 Missense_Mutation p.R143H 0.15 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 4 23833186 23833186 C T PPARGC1A Silent p.P141P 0.13 TCGA-5M-AAT6-01 4 24556495 24556495 A G DHX15 Silent p.T311T 0.19 TCGA-5M-AAT6-01 4 24557935 24557935 A G DHX15 Missense_Mutation p.L267P 0.11 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 4 24802124 24802124 C T SOD3 3'UTR 0.13 TCGA-5M-AAT6-01 4 2952780 2952780 A - NOP14 Intron 0.12 TCGA-5M-AAT6-01 4 3133117 3133117 A - HTT Frame_Shift_Del p.N699Mfs*9 0.10 TCGA-5M-AAT6-01 4 3432638 3432638 C T RGS12 Missense_Mutation p.P1357L 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-5M-AAT6-01 4 36069784 36069784 G A ARAP2 Silent p.D1620D 0.15 TCGA-5M-AAT6-01 4 37962303 37962303 A - PTTG2 Frame_Shift_Del p.K84Nfs*10 0.13 TCGA-5M-AAT6-01 4 42145774 42145774 G A BEND4 Missense_Mutation p.T242I 0.15 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-5M-AAT6-01 4 48037700 48037700 G A NIPAL1 Silent p.A248A 0.16 TCGA-5M-AAT6-01 4 517628 517628 C T PIGG Silent p.C665C 0.12 TCGA-5M-AAT6-01 4 52904419 52904419 C T SGCB Missense_Mutation p.A3T 0.11 tolerated_low_confidence(0.92) unknown(0) TCGA-5M-AAT6-01 4 57181071 57181071 G A KIAA1211 Missense_Mutation p.S468N 0.16 tolerated(0.47) benign(0.383) TCGA-5M-AAT6-01 4 57189673 57189673 G A KIAA1211 Silent p.T1106T 0.15 TCGA-5M-AAT6-01 4 619713 619713 C T PDE6B Missense_Mutation p.R100C 0.17 deleterious(0.02) probably_damaging(1) TCGA-5M-AAT6-01 4 619829 619829 C T PDE6B Silent p.V138V 0.18 TCGA-5M-AAT6-01 4 69796308 69796308 G A UGT2A3 Silent p.S420S 0.15 TCGA-5M-AAT6-01 4 70361048 70361048 A G UGT2B4 Missense_Mutation p.Y178H 0.12 tolerated(0.33) benign(0.073) TCGA-5M-AAT6-01 4 74019702 74019702 C T ANKRD17 Missense_Mutation p.A377T 0.14 probably_damaging(0.988) TCGA-5M-AAT6-01 4 74316462 74316462 G A AFP Missense_Mutation p.E474K 0.13 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 4 76813078 76813078 G A PPEF2 Silent p.L37L 0.20 TCGA-5M-AAT6-01 4 77660518 77660518 C T SHROOM3 Missense_Mutation p.R398C 0.14 deleterious(0.01) possibly_damaging(0.826) TCGA-5M-AAT6-01 4 77661690 77661690 C T SHROOM3 Silent p.F788F 0.10 TCGA-5M-AAT6-01 4 7774453 7774453 C T AFAP1 Intron 0.27 TCGA-5M-AAT6-01 4 77955686 77955686 T C SEPT11 3'UTR 0.15 TCGA-5M-AAT6-01 4 79442745 79442745 C T FRAS1 Missense_Mutation p.R3537C 0.12 probably_damaging(0.998) TCGA-5M-AAT6-01 4 79860449 79860449 G A PAQR3 5'UTR 0.16 TCGA-5M-AAT6-01 4 8288335 8288337 TCA - HTRA3 In_Frame_Del p.I179del 0.14 TCGA-5M-AAT6-01 4 8293275 8293275 C T HTRA3 Missense_Mutation p.T296M 0.11 deleterious(0) probably_damaging(0.995) TCGA-5M-AAT6-01 4 83748634 83748634 C T SEC31A Missense_Mutation p.G1060D 0.17 tolerated(0.22) benign(0.236) TCGA-5M-AAT6-01 4 84347153 84347153 G A HELQ Silent p.I923I 0.13 TCGA-5M-AAT6-01 4 864560 864560 C - GAK Frame_Shift_Del p.L730* 0.10 TCGA-5M-AAT6-01 4 87655581 87655581 T - PTPN13 Frame_Shift_Del p.F663Lfs*7 0.09 TCGA-5M-AAT6-01 4 88394818 88394818 T C SPARCL1 3'UTR 0.16 TCGA-5M-AAT6-01 4 88533866 88533866 C T DSPP Silent p.V176V 0.17 TCGA-5M-AAT6-01 4 95575627 95575627 G A PDLIM5 Missense_Mutation p.A463T 0.16 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 4 960997 960997 G A DGKQ Silent p.G380G 0.10 TCGA-5M-AAT6-01 4 9785421 9785421 G T DRD5 3'UTR 0.16 TCGA-5M-AAT6-01 4 982879 982879 G A SLC26A1 Silent p.C616C 0.15 TCGA-5M-AAT6-01 5 102493957 102493957 G T PPIP5K2 Missense_Mutation p.G519C 0.10 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 5 110097419 110097419 G A SLC25A46 Silent p.L398L 0.14 TCGA-5M-AAT6-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.15 TCGA-5M-AAT6-01 5 112175651 112175651 A - APC Frame_Shift_Del p.N1455Ifs*18 0.13 TCGA-5M-AAT6-01 5 114860045 114860045 A G FEM1C Missense_Mutation p.I605T 0.15 deleterious(0) possibly_damaging(0.821) TCGA-5M-AAT6-01 5 121356273 121356273 C T SRFBP1 Silent p.S281S 0.17 TCGA-5M-AAT6-01 5 122425897 122425897 A G PRDM6 Missense_Mutation p.E63G 0.16 tolerated_low_confidence(0.11) unknown(0) TCGA-5M-AAT6-01 5 122713213 122713213 T - CEP120 Frame_Shift_Del p.K738Rfs*29 0.13 TCGA-5M-AAT6-01 5 127471485 127471485 T - SLC12A2 Frame_Shift_Del p.F466Lfs*59 0.10 TCGA-5M-AAT6-01 5 131310522 131310522 A G ACSL6 Intron 0.13 TCGA-5M-AAT6-01 5 131533899 131533899 G A P4HA2 Silent p.Y457Y 0.15 TCGA-5M-AAT6-01 5 132083214 132083214 G A CCNI2 Silent p.P9P 0.13 TCGA-5M-AAT6-01 5 132099980 132099980 C T SEPT8 Missense_Mutation p.V95M 0.20 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 5 134120138 134120138 A - DDX46 Frame_Shift_Del p.T418Qfs*23 0.14 TCGA-5M-AAT6-01 5 135390545 135390545 C T TGFBI Missense_Mutation p.R469C 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-5M-AAT6-01 5 137476464 137476464 T C BRD8 Missense_Mutation p.Y1182C 0.12 deleterious(0) possibly_damaging(0.888) TCGA-5M-AAT6-01 5 13753556 13753556 C T DNAH5 Missense_Mutation p.R3553Q 0.12 benign(0.238) TCGA-5M-AAT6-01 5 137780547 137780547 T C REEP2 Silent p.A136A 0.16 TCGA-5M-AAT6-01 5 137803069 137803069 T C EGR1 Missense_Mutation p.Y311H 0.15 tolerated(0.12) unknown(0) TCGA-5M-AAT6-01 5 138163372 138163372 G A CTNNA1 Missense_Mutation p.A343T 0.16 deleterious(0.02) benign(0.424) TCGA-5M-AAT6-01 5 139251347 139251347 G A NRG2 Silent p.G357G 0.14 TCGA-5M-AAT6-01 5 139744111 139744111 G A SLC4A9 Missense_Mutation p.D542N 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 5 139909168 139909168 T A ANKHD1 Missense_Mutation p.F2213I 0.18 benign(0.172) TCGA-5M-AAT6-01 5 140019094 140019094 T C TMCO6 5'UTR 0.13 TCGA-5M-AAT6-01 5 140175766 140175766 C T PCDHA2 Missense_Mutation p.S406L 0.17 deleterious_low_confidence(0) possibly_damaging(0.538) TCGA-5M-AAT6-01 5 140176494 140176494 G A PCDHA2 Missense_Mutation p.V649M 0.18 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-5M-AAT6-01 5 140182149 140182149 C T PCDHA3 Missense_Mutation p.S456L 0.14 deleterious_low_confidence(0) benign(0.008) TCGA-5M-AAT6-01 5 140202809 140202809 G A PCDHA5 Silent p.A483A 0.13 TCGA-5M-AAT6-01 5 140207969 140207969 G A PCDHA6 Missense_Mutation p.R98Q 0.13 tolerated_low_confidence(0.19) benign(0.183) TCGA-5M-AAT6-01 5 140209359 140209359 C T PCDHA6 Silent p.N561N 0.22 TCGA-5M-AAT6-01 5 140215308 140215308 A T PCDHA7 Missense_Mutation p.D447V 0.16 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-5M-AAT6-01 5 140221874 140221874 C T PCDHA8 Missense_Mutation p.T323M 0.19 deleterious_low_confidence(0.04) benign(0.088) TCGA-5M-AAT6-01 5 140222377 140222377 T C PCDHA8 Missense_Mutation p.S491P 0.10 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-5M-AAT6-01 5 140229524 140229524 G A PCDHA9 Missense_Mutation p.A482T 0.19 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-5M-AAT6-01 5 140237415 140237415 C T PCDHA10 Silent p.R594R 0.17 TCGA-5M-AAT6-01 5 140237486 140237486 G A PCDHA10 Missense_Mutation p.R618H 0.11 tolerated_low_confidence(0.09) benign(0.052) TCGA-5M-AAT6-01 5 140262588 140262588 C T PCDHA13 Silent p.S245S 0.14 TCGA-5M-AAT6-01 5 140346564 140346564 C A PCDHAC2 Silent p.R71R 0.11 TCGA-5M-AAT6-01 5 140482676 140482676 T - PCDHB3 3'UTR 0.09 TCGA-5M-AAT6-01 5 140531274 140531274 G A PCDHB6 Missense_Mutation p.G479D 0.10 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-5M-AAT6-01 5 140590557 140590557 C T PCDHB12 Missense_Mutation p.A693V 0.13 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-5M-AAT6-01 5 140590559 140590559 T G PCDHB12 Missense_Mutation p.L694V 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-5M-AAT6-01 5 140724186 140724186 C T PCDHGA3 Silent p.L196L 0.15 TCGA-5M-AAT6-01 5 140807429 140807429 C T PCDHGB6 Intron 0.16 TCGA-5M-AAT6-01 5 140812146 140812146 G A PCDHGA12 Missense_Mutation p.R607H 0.11 tolerated_low_confidence(0.13) benign(0.103) TCGA-5M-AAT6-01 5 140870459 140870459 A G PCDHGC5 Missense_Mutation p.H551R 0.13 tolerated(0.08) benign(0.197) TCGA-5M-AAT6-01 5 141036350 141036350 T G ARAP3 Missense_Mutation p.E1197A 0.15 deleterious(0.01) possibly_damaging(0.908) TCGA-5M-AAT6-01 5 141335808 141335808 C A PCDH12 Missense_Mutation p.A537S 0.15 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 5 141693977 141693977 C T SPRY4 Missense_Mutation p.A256T 0.13 tolerated(0.2) possibly_damaging(0.655) TCGA-5M-AAT6-01 5 14508112 14508112 G A TRIO Missense_Mutation p.A2959T 0.15 unknown(0) TCGA-5M-AAT6-01 5 145252448 145252448 G A GRXCR2 Silent p.S28S 0.15 TCGA-5M-AAT6-01 5 1488518 1488518 T C LPCAT1 Missense_Mutation p.T219A 0.15 deleterious(0.02) benign(0.158) TCGA-5M-AAT6-01 5 149786784 149786784 G A CD74 Missense_Mutation p.R77W 0.16 deleterious(0) probably_damaging(0.977) TCGA-5M-AAT6-01 5 149998126 149998126 A G SYNPO Missense_Mutation p.D66G 0.15 tolerated_low_confidence(0.1) benign(0.007) TCGA-5M-AAT6-01 5 150431759 150431759 A G TNIP1 Missense_Mutation p.L230P 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-5M-AAT6-01 5 150867919 150867919 T C SLC36A1 3'UTR 0.12 TCGA-5M-AAT6-01 5 151049263 151049263 C A SPARC Missense_Mutation p.G138V 0.12 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 5 151055701 151055701 C T SPARC Missense_Mutation p.A17T 0.14 tolerated_low_confidence(0.06) benign(0.098) TCGA-5M-AAT6-01 5 151180423 151180423 G A G3BP1 Missense_Mutation p.S396N 0.20 tolerated(0.38) benign(0.004) TCGA-5M-AAT6-01 5 153434857 153434857 C T MFAP3 3'UTR 0.09 TCGA-5M-AAT6-01 5 154346488 154346488 T - MRPL22 3'UTR 0.17 TCGA-5M-AAT6-01 5 159776472 159776472 G A C1QTNF2 Silent p.F232F 0.09 TCGA-5M-AAT6-01 5 160115023 160115023 A G ATP10B Missense_Mutation p.F20S 0.09 tolerated(0.76) benign(0.001) TCGA-5M-AAT6-01 5 162944613 162944613 T C MAT2B Missense_Mutation p.M256T 0.11 deleterious(0) possibly_damaging(0.862) TCGA-5M-AAT6-01 5 16465185 16465187 TCC - ZNF622 In_Frame_Del p.E196del 0.13 TCGA-5M-AAT6-01 5 16711133 16711133 T C MYO10 Splice_Site p.X685_splice 0.09 TCGA-5M-AAT6-01 5 167674484 167674484 C A TENM2 Missense_Mutation p.D2180E 0.19 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 5 169506008 169506008 C T DOCK2 Missense_Mutation p.T1675M 0.11 tolerated(0.18) benign(0.064) TCGA-5M-AAT6-01 5 176004516 176004516 G A CDHR2 Silent p.A437A 0.16 TCGA-5M-AAT6-01 5 176295166 176295166 A G UNC5A Missense_Mutation p.R110G 0.13 deleterious(0) probably_damaging(0.989) TCGA-5M-AAT6-01 5 176519419 176519419 C T FGFR4 Silent p.S275S 0.11 TCGA-5M-AAT6-01 5 176733972 176733972 G A MXD3 3'Flank 0.16 TCGA-5M-AAT6-01 5 176759076 176759076 G A LMAN2 3'UTR 0.16 TCGA-5M-AAT6-01 5 176794512 176794512 G A RGS14 Missense_Mutation p.R194Q 0.18 tolerated(0.14) benign(0.01) TCGA-5M-AAT6-01 5 176798908 176798908 C T RGS14 Silent p.S511S 0.17 TCGA-5M-AAT6-01 5 176825562 176825562 T G SLC34A1 3'UTR 0.22 TCGA-5M-AAT6-01 5 176931623 176931623 C T DOK3 Silent p.S284S 0.18 TCGA-5M-AAT6-01 5 178408795 178408795 C T GRM6 Missense_Mutation p.G833S 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-5M-AAT6-01 5 179023606 179023606 A G RUFY1 Missense_Mutation p.S519G 0.18 deleterious(0.04) benign(0.053) TCGA-5M-AAT6-01 5 180037000 180037000 C T FLT4 Missense_Mutation p.G1238R 0.13 tolerated(0.12) possibly_damaging(0.893) TCGA-5M-AAT6-01 5 180057711 180057711 G A FLT4 Nonsense_Mutation p.R82* 0.24 TCGA-5M-AAT6-01 5 180622658 180622658 G A TRIM7 Silent p.P348P 0.15 TCGA-5M-AAT6-01 5 1814534 1814534 G A NDUFS6 Missense_Mutation p.G90S 0.11 deleterious(0) probably_damaging(0.989) TCGA-5M-AAT6-01 5 19483591 19483591 G - CDH18 Frame_Shift_Del p.I568Lfs*2 0.11 TCGA-5M-AAT6-01 5 216947 216947 A G CCDC127 Silent p.D6D 0.10 TCGA-5M-AAT6-01 5 24488219 24488219 T - CDH10 Frame_Shift_Del p.E641Sfs*3 0.13 TCGA-5M-AAT6-01 5 31322962 31322962 A - CDH6 Frame_Shift_Del p.E643Sfs*3 0.10 TCGA-5M-AAT6-01 5 32072367 32072367 A G PDZD2 Missense_Mutation p.H890R 0.10 tolerated(0.16) possibly_damaging(0.649) TCGA-5M-AAT6-01 5 32444812 32444814 CCT - ZFR 5'UTR 0.12 TCGA-5M-AAT6-01 5 35654737 35654737 G A SPEF2 Missense_Mutation p.R296H 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-5M-AAT6-01 5 35876473 35876473 A T IL7R Missense_Mutation p.Q422L 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-5M-AAT6-01 5 36117970 36117970 G A LMBRD2 Missense_Mutation p.A390V 0.14 deleterious(0.01) probably_damaging(0.974) TCGA-5M-AAT6-01 5 36629650 36629650 A G SLC1A3 Missense_Mutation p.M94V 0.15 deleterious(0.01) possibly_damaging(0.507) TCGA-5M-AAT6-01 5 38490360 38490360 A - LIFR Frame_Shift_Del p.F700Sfs*16 0.11 TCGA-5M-AAT6-01 5 40853753 40853753 T C CARD6 Silent p.N773N 0.13 TCGA-5M-AAT6-01 5 40853770 40853770 G A CARD6 Missense_Mutation p.R779Q 0.12 tolerated(0.39) benign(0.016) TCGA-5M-AAT6-01 5 40854115 40854115 C A CARD6 Missense_Mutation p.P894H 0.13 deleterious(0.01) probably_damaging(0.935) TCGA-5M-AAT6-01 5 42801388 42801388 C T SEPP1 Missense_Mutation p.V194M 0.07 tolerated(0.09) probably_damaging(0.962) TCGA-5M-AAT6-01 5 45262241 45262241 C T HCN1 Missense_Mutation p.V819M 0.17 tolerated_low_confidence(0.23) benign(0.001) TCGA-5M-AAT6-01 5 45396642 45396642 G A HCN1 Silent p.T394T 0.12 TCGA-5M-AAT6-01 5 458093 458093 G A EXOC3 Missense_Mutation p.D415N 0.15 deleterious(0.01) benign(0.088) TCGA-5M-AAT6-01 5 53814400 53814400 C T SNX18 Silent p.R206R 0.12 TCGA-5M-AAT6-01 5 53815679 53815679 A G SNX18 3'UTR 0.10 TCGA-5M-AAT6-01 5 54566419 54566419 A G DHX29 Missense_Mutation p.Y994H 0.16 deleterious(0) probably_damaging(0.959) TCGA-5M-AAT6-01 5 5460873 5460873 A G KIAA0947 Missense_Mutation p.R476G 0.12 tolerated(0.23) benign(0.022) TCGA-5M-AAT6-01 5 55155381 55155381 C A IL31RA Silent p.T36T 0.19 TCGA-5M-AAT6-01 5 55422828 55422828 C T ANKRD55 Missense_Mutation p.A240T 0.15 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 5 57752857 57752857 T C PLK2 Silent p.S357S 0.13 TCGA-5M-AAT6-01 5 57753071 57753071 C T PLK2 Silent p.L315L 0.14 TCGA-5M-AAT6-01 5 64872843 64872843 C T PPWD1 Silent p.F369F 0.14 TCGA-5M-AAT6-01 5 67591106 67591106 A G PIK3R1 Missense_Mutation p.K567E 0.18 deleterious(0) possibly_damaging(0.9) TCGA-5M-AAT6-01 5 70806855 70806855 A - BDP1 Frame_Shift_Del p.T1314Qfs*10 0.11 TCGA-5M-AAT6-01 5 71482483 71482483 G A MAP1B Missense_Mutation p.V138M 0.19 unknown(0) TCGA-5M-AAT6-01 5 71756155 71756155 G T ZNF366 Missense_Mutation p.P390H 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-5M-AAT6-01 5 74324781 74324781 T C GCNT4 Missense_Mutation p.D361G 0.14 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 5 75427937 75427937 G T SV2C Missense_Mutation p.R121L 0.18 tolerated(0.23) benign(0.004) TCGA-5M-AAT6-01 5 75591742 75591742 A G SV2C Missense_Mutation p.T493A 0.17 tolerated(0.28) benign(0.001) TCGA-5M-AAT6-01 5 75967685 75967685 G A IQGAP2 Missense_Mutation p.R982H 0.16 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 5 76349824 76349824 A C AGGF1 Missense_Mutation p.H501P 0.24 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 5 7757640 7757640 C T ADCY2 Missense_Mutation p.R679W 0.11 deleterious(0) probably_damaging(0.981) TCGA-5M-AAT6-01 5 79617569 79617569 T - SPZ1 3'UTR 0.24 TCGA-5M-AAT6-01 5 79743997 79743997 A G ZFYVE16 Silent p.L959L 0.06 TCGA-5M-AAT6-01 5 80626717 80626717 C A ACOT12 Silent p.S478S 0.17 TCGA-5M-AAT6-01 5 80628303 80628303 T C ACOT12 Missense_Mutation p.K462E 0.20 tolerated(0.33) benign(0.032) TCGA-5M-AAT6-01 5 80716207 80716207 T C SSBP2 3'UTR 0.16 TCGA-5M-AAT6-01 5 81613965 81613965 G A ATP6AP1L Missense_Mutation p.R174Q 0.12 deleterious(0.03) possibly_damaging(0.756) TCGA-5M-AAT6-01 5 86690858 86690858 T C CCNH Intron 0.12 TCGA-5M-AAT6-01 5 90106936 90106936 T C GPR98 Missense_Mutation p.W5287R 0.15 probably_damaging(0.961) TCGA-5M-AAT6-01 5 90124781 90124781 T - GPR98 Frame_Shift_Del p.F5465Lfs*13 0.11 TCGA-5M-AAT6-01 5 9108295 9108295 C T SEMA5A Missense_Mutation p.R677H 0.13 tolerated(0.09) benign(0.04) TCGA-5M-AAT6-01 5 96253534 96253534 C T ERAP2 3'UTR 0.22 TCGA-5M-AAT6-01 5 96332177 96332177 T G LNPEP Silent p.S497S 0.22 TCGA-5M-AAT6-01 6 102307264 102307264 C A GRIK2 Missense_Mutation p.L474I 0.07 tolerated(0.07) probably_damaging(0.997) TCGA-5M-AAT6-01 6 10410228 10410228 C T TFAP2A Missense_Mutation p.R129Q 0.14 deleterious(0.02) possibly_damaging(0.883) TCGA-5M-AAT6-01 6 105549014 105549014 C T BVES Missense_Mutation p.V345I 0.17 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-5M-AAT6-01 6 105573335 105573335 T - BVES Frame_Shift_Del p.K157Rfs*17 0.10 TCGA-5M-AAT6-01 6 107595247 107595247 G A PDSS2 Silent p.L206L 0.16 TCGA-5M-AAT6-01 6 108225844 108225844 C T SEC63 Missense_Mutation p.R348Q 0.16 tolerated(0.23) benign(0.067) TCGA-5M-AAT6-01 6 110300493 110300493 C T GPR6 Silent p.L60L 0.11 TCGA-5M-AAT6-01 6 11105044 11105044 C T ERVFRD-1 Missense_Mutation p.R167H 0.16 tolerated_low_confidence(0.18) benign(0) TCGA-5M-AAT6-01 6 111409054 111409054 G A SLC16A10 Silent p.P33P 0.11 TCGA-5M-AAT6-01 6 112402331 112402331 T C TUBE1 Missense_Mutation p.Q97R 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-5M-AAT6-01 6 112493979 112493979 C T LAMA4 Missense_Mutation p.R462Q 0.24 tolerated(0.35) benign(0.148) TCGA-5M-AAT6-01 6 112522851 112522851 C A LAMA4 Missense_Mutation p.R154L 0.14 deleterious(0) probably_damaging(0.971) TCGA-5M-AAT6-01 6 114281081 114281081 T - HDAC2 Frame_Shift_Del p.M52Wfs*14 0.10 TCGA-5M-AAT6-01 6 117725546 117725546 C T ROS1 Missense_Mutation p.S112N 0.18 tolerated(0.3) benign(0.02) TCGA-5M-AAT6-01 6 127648202 127648202 T - ECHDC1 Frame_Shift_Del p.N109Ifs*9 0.21 TCGA-5M-AAT6-01 6 1313402 1313402 T C FOXQ1 Missense_Mutation p.F155L 0.18 deleterious(0) probably_damaging(0.969) TCGA-5M-AAT6-01 6 1314420 1314420 T - FOXQ1 3'UTR 0.16 TCGA-5M-AAT6-01 6 13273364 13273364 C T TBC1D7 Intron 0.14 TCGA-5M-AAT6-01 6 133035080 133035080 T C VNN1 Missense_Mutation p.H32R 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-5M-AAT6-01 6 135287508 135287508 G A HBS1L Missense_Mutation p.R668C 0.11 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 6 136710518 136710518 G A MAP7 Missense_Mutation p.R150W 0.16 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 6 136710642 136710642 T C MAP7 Missense_Mutation p.I108M 0.17 tolerated(0.11) benign(0.254) TCGA-5M-AAT6-01 6 136980462 136980462 C T MAP3K5 Missense_Mutation p.S474N 0.08 tolerated(1) probably_damaging(0.974) TCGA-5M-AAT6-01 6 137322843 137322843 T G IL20RA Missense_Mutation p.E505A 0.13 deleterious(0.04) benign(0.231) TCGA-5M-AAT6-01 6 138539224 138539224 T G PBOV1 Missense_Mutation p.E103D 0.13 tolerated_low_confidence(0.11) unknown(0) TCGA-5M-AAT6-01 6 143092982 143092982 C T HIVEP2 Missense_Mutation p.R965H 0.12 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 6 143382187 143382187 T G AIG1 Missense_Mutation p.L42R 0.09 deleterious(0) probably_damaging(0.983) TCGA-5M-AAT6-01 6 146207338 146207338 A - SHPRH 3'UTR 0.14 TCGA-5M-AAT6-01 6 150071063 150071063 G A PCMT1 Missense_Mutation p.S67N 0.20 tolerated(0.5) benign(0.002) TCGA-5M-AAT6-01 6 151673735 151673735 G - AKAP12 Frame_Shift_Del p.E1404Rfs*18 0.12 TCGA-5M-AAT6-01 6 152461141 152461141 G A SYNE1 Missense_Mutation p.R8468C 0.13 benign(0.009) TCGA-5M-AAT6-01 6 152631012 152631012 G C SYNE1 Missense_Mutation p.S5720R 0.17 probably_damaging(0.998) TCGA-5M-AAT6-01 6 155123153 155123153 C A SCAF8 Missense_Mutation p.P219T 0.13 deleterious(0.02) unknown(0) TCGA-5M-AAT6-01 6 157222612 157222612 G A ARID1B Missense_Mutation p.A627T 0.15 probably_damaging(0.958) TCGA-5M-AAT6-01 6 158049440 158049440 T - ZDHHC14 Frame_Shift_Del p.Y211Ifs*10 0.14 TCGA-5M-AAT6-01 6 158363937 158363937 T - SNX9 3'UTR 0.14 TCGA-5M-AAT6-01 6 158919736 158919736 C T TULP4 Missense_Mutation p.R636W 0.09 deleterious(0) benign(0.011) TCGA-5M-AAT6-01 6 159006377 159006377 G A TMEM181 Missense_Mutation p.D238N 0.14 tolerated(0.2) benign(0.003) TCGA-5M-AAT6-01 6 159084381 159084381 G A SYTL3 Silent p.A27A 0.14 TCGA-5M-AAT6-01 6 159206428 159206428 G A EZR Missense_Mutation p.S127F 0.17 deleterious(0) probably_damaging(0.913) TCGA-5M-AAT6-01 6 159653575 159653575 G A FNDC1 Silent p.P677P 0.16 TCGA-5M-AAT6-01 6 159654439 159654439 C A FNDC1 Silent p.P965P 0.21 TCGA-5M-AAT6-01 6 160105989 160105989 A G SOD2 Silent p.V140V 0.11 TCGA-5M-AAT6-01 6 160430077 160430077 C A IGF2R Missense_Mutation p.L109M 0.15 tolerated(0.06) benign(0.099) TCGA-5M-AAT6-01 6 161021956 161021956 A - LPA Frame_Shift_Del p.F1040Lfs*5 0.12 TCGA-5M-AAT6-01 6 1611496 1611496 C - FOXC1 Frame_Shift_Del p.P274Rfs*41 0.10 TCGA-5M-AAT6-01 6 1613469 1613469 T C FOXC1 3'UTR 0.16 TCGA-5M-AAT6-01 6 166902390 166902390 G A RPS6KA2 Nonsense_Mutation p.Q288* 0.13 TCGA-5M-AAT6-01 6 166912104 166912106 GTC - RPS6KA2 In_Frame_Del p.D221del 0.13 TCGA-5M-AAT6-01 6 167550474 167550474 C T CCR6 Silent p.A252A 0.13 TCGA-5M-AAT6-01 6 167550914 167550914 C T CCR6 3'UTR 0.12 TCGA-5M-AAT6-01 6 168445602 168445602 C T KIF25 Missense_Mutation p.R361W 0.14 deleterious(0.04) possibly_damaging(0.89) TCGA-5M-AAT6-01 6 170115844 170115844 C T PHF10 Missense_Mutation p.R218H 0.08 deleterious(0.01) possibly_damaging(0.657) TCGA-5M-AAT6-01 6 18188099 18188099 C T KDM1B Intron 0.12 TCGA-5M-AAT6-01 6 20109846 20109846 C T MBOAT1 Silent p.P448P 0.08 TCGA-5M-AAT6-01 6 24450077 24450077 G A GPLD1 Silent p.D462D 0.15 TCGA-5M-AAT6-01 6 24843702 24843702 C T FAM65B Silent p.L436L 0.14 TCGA-5M-AAT6-01 6 26285509 26285512 GTAA - HIST1H4H Frame_Shift_Del p.Y73Qfs*9 0.10 TCGA-5M-AAT6-01 6 27420258 27420258 T G ZNF184 Missense_Mutation p.K360N 0.20 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 6 28227198 28227198 C T NKAPL Missense_Mutation p.R17W 0.12 deleterious(0.04) unknown(0) TCGA-5M-AAT6-01 6 29556370 29556370 G A OR2H2 Missense_Mutation p.G217R 0.18 deleterious(0) probably_damaging(0.916) TCGA-5M-AAT6-01 6 30128264 30128264 A G TRIM10 Silent p.A124A 0.08 TCGA-5M-AAT6-01 6 30558365 30558365 C T ABCF1 Silent p.L809L 0.13 TCGA-5M-AAT6-01 6 30617658 30617658 C T C6orf136 Silent p.H313H 0.14 TCGA-5M-AAT6-01 6 30709075 30709075 C T FLOT1 Silent p.A82A 0.10 TCGA-5M-AAT6-01 6 30917963 30917963 G A DPCR1 Silent p.T574T 0.16 TCGA-5M-AAT6-01 6 3113559 3113559 G A RIPK1 Missense_Mutation p.V668I 0.13 tolerated(1) benign(0.004) TCGA-5M-AAT6-01 6 3157721 3157721 C T TUBB2A 5'UTR 0.12 TCGA-5M-AAT6-01 6 31602641 31602641 C - PRRC2A Frame_Shift_Del p.K1685Rfs*9 0.15 TCGA-5M-AAT6-01 6 31725979 31725979 G A MSH5 Missense_Mutation p.R351H 0.14 deleterious(0) probably_damaging(0.988) TCGA-5M-AAT6-01 6 31828980 31828980 C T NEU1 Silent p.P200P 0.11 TCGA-5M-AAT6-01 6 31833125 31833125 T - SLC44A4 Frame_Shift_Del p.N576Mfs*67 0.15 TCGA-5M-AAT6-01 6 31927116 31927116 T C SKIV2L Missense_Mutation p.V22A 0.23 deleterious(0.01) benign(0.063) TCGA-5M-AAT6-01 6 31973458 31973458 G A C4A 3'Flank 0.14 TCGA-5M-AAT6-01 6 32008484 32008484 T C CYP21A2 Silent p.I386I 0.07 TCGA-5M-AAT6-01 6 32017963 32017963 T C TNXB 5'Flank 0.18 TCGA-5M-AAT6-01 6 32123742 32123742 C T PPT2 Silent p.C182C 0.20 TCGA-5M-AAT6-01 6 32134865 32134865 C T EGFL8 Silent p.D144D 0.12 TCGA-5M-AAT6-01 6 32138202 32138202 G A AGPAT1 Silent p.D170D 0.14 TCGA-5M-AAT6-01 6 33138900 33138900 A G COL11A2 Silent p.P1033P 0.14 TCGA-5M-AAT6-01 6 33543219 33543219 C T BAK1 Splice_Site p.X69_splice 0.16 TCGA-5M-AAT6-01 6 33630389 33630389 C T ITPR3 Nonsense_Mutation p.R266* 0.20 TCGA-5M-AAT6-01 6 33638307 33638307 T C ITPR3 Missense_Mutation p.F799L 0.20 deleterious(0.01) benign(0.265) TCGA-5M-AAT6-01 6 34004122 34004122 C T GRM4 Missense_Mutation p.V589M 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-5M-AAT6-01 6 34004224 34004224 A G GRM4 Missense_Mutation p.Y555H 0.20 tolerated(0.07) benign(0.024) TCGA-5M-AAT6-01 6 34100963 34100963 C T GRM4 Missense_Mutation p.R104H 0.17 tolerated(0.81) probably_damaging(0.999) TCGA-5M-AAT6-01 6 35467799 35467799 T C TULP1 Missense_Mutation p.Q485R 0.11 tolerated(0.12) benign(0.196) TCGA-5M-AAT6-01 6 36168495 36168495 G A BRPF3 Silent p.P132P 0.18 TCGA-5M-AAT6-01 6 36178141 36178142 AC - BRPF3 Frame_Shift_Del p.T673Nfs*30 0.13 TCGA-5M-AAT6-01 6 36926942 36926942 G A PI16 Missense_Mutation p.A65T 0.21 tolerated(0.07) probably_damaging(1) TCGA-5M-AAT6-01 6 3737366 3737366 T - PXDC1 Frame_Shift_Del p.N138Mfs*21 0.12 TCGA-5M-AAT6-01 6 39682691 39682691 T C KIF6 Intron 0.20 TCGA-5M-AAT6-01 6 4044129 4044131 CAC - PRPF4B In_Frame_Del p.P579del 0.15 TCGA-5M-AAT6-01 6 41773502 41773502 A T USP49 Missense_Mutation p.L407Q 0.13 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 6 41895194 41895194 G A BYSL Silent p.A117A 0.19 TCGA-5M-AAT6-01 6 42232474 42232474 C T TRERF1 Missense_Mutation p.G535R 0.16 deleterious(0) probably_damaging(0.956) TCGA-5M-AAT6-01 6 42978723 42978723 T C PPP2R5D Silent p.T553T 0.21 TCGA-5M-AAT6-01 6 43271811 43271811 G A SLC22A7 Missense_Mutation p.R474Q 0.19 tolerated(0.05) possibly_damaging(0.474) TCGA-5M-AAT6-01 6 43540310 43540310 C T XPO5 Missense_Mutation p.R78Q 0.16 tolerated(0.06) possibly_damaging(0.791) TCGA-5M-AAT6-01 6 43590455 43590455 C T GTPBP2 Missense_Mutation p.R461H 0.16 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 6 44219919 44219921 AGA - HSP90AB1 In_Frame_Del p.K552del 0.12 TCGA-5M-AAT6-01 6 47254131 47254131 A G TNFRSF21 Silent p.H99H 0.13 TCGA-5M-AAT6-01 6 47277185 47277185 G A TNFRSF21 Silent p.A21A 0.14 TCGA-5M-AAT6-01 6 47682172 47682172 C T GPR115 Silent p.T397T 0.19 TCGA-5M-AAT6-01 6 49753882 49753882 A G PGK2 Missense_Mutation p.L340S 0.15 tolerated(0.06) benign(0.102) TCGA-5M-AAT6-01 6 49928035 49928035 C T DEFB114 Silent p.E60E 0.18 TCGA-5M-AAT6-01 6 50811264 50811264 A - TFAP2B 3'UTR 0.26 TCGA-5M-AAT6-01 6 52271399 52271399 C T PAQR8 3'UTR 0.18 TCGA-5M-AAT6-01 6 53372325 53372325 A G GCLC Missense_Mutation p.I346T 0.19 tolerated(0.34) possibly_damaging(0.474) TCGA-5M-AAT6-01 6 53385695 53385695 G T GCLC Silent p.P109P 0.13 TCGA-5M-AAT6-01 6 53519958 53519958 T C KLHL31 Missense_Mutation p.E38G 0.18 deleterious_low_confidence(0.02) benign(0) TCGA-5M-AAT6-01 6 5545521 5545521 G A FARS2 Missense_Mutation p.R338H 0.10 tolerated(0.09) benign(0.056) TCGA-5M-AAT6-01 6 55620464 55620464 G T BMP5 Missense_Mutation p.P411H 0.12 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 6 56394912 56394912 T C DST Missense_Mutation p.I3087V 0.15 probably_damaging(0.997) TCGA-5M-AAT6-01 6 57015550 57015550 A G ZNF451 Missense_Mutation p.Y881C 0.17 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-5M-AAT6-01 6 66042171 66042171 T C EYS Intron 0.08 TCGA-5M-AAT6-01 6 70866578 70866578 G - COL19A1 Frame_Shift_Del p.G753Afs*32 0.12 TCGA-5M-AAT6-01 6 71138065 71138065 T C FAM135A Missense_Mutation p.M7T 0.15 tolerated(1) probably_damaging(0.992) TCGA-5M-AAT6-01 6 72960716 72960717 - T RIMS1 Frame_Shift_Ins p.R824* 0.10 TCGA-5M-AAT6-01 6 7378997 7378997 G A CAGE1 Silent p.N180N 0.17 TCGA-5M-AAT6-01 6 73843172 73843172 C T KCNQ5 Missense_Mutation p.R445C 0.12 deleterious(0.02) benign(0.429) TCGA-5M-AAT6-01 6 74520807 74520807 C A CD109 Missense_Mutation p.S1213R 0.14 tolerated(0.23) benign(0.009) TCGA-5M-AAT6-01 6 79655900 79655900 C T PHIP Missense_Mutation p.R1483Q 0.13 tolerated(0.45) probably_damaging(0.978) TCGA-5M-AAT6-01 6 80223411 80223411 G A LCA5 Nonsense_Mutation p.R80* 0.19 TCGA-5M-AAT6-01 6 83848665 83848665 C T DOPEY1 Missense_Mutation p.T1635I 0.16 tolerated(0.08) benign(0.083) TCGA-5M-AAT6-01 6 83865753 83865753 A - DOPEY1 Frame_Shift_Del p.R2180Dfs*2 0.10 TCGA-5M-AAT6-01 6 88757608 88757608 G A SPACA1 5'UTR 0.19 TCGA-5M-AAT6-01 6 88767410 88767410 C T SPACA1 Missense_Mutation p.R116C 0.19 deleterious(0) probably_damaging(0.972) TCGA-5M-AAT6-01 6 89871861 89871861 C T PM20D2 Missense_Mutation p.T397M 0.18 deleterious(0.01) benign(0.03) TCGA-5M-AAT6-01 6 90402277 90402277 G A MDN1 Missense_Mutation p.A3491V 0.13 benign(0.035) TCGA-5M-AAT6-01 6 94129105 94129105 T C EPHA7 5'UTR 0.08 TCGA-5M-AAT6-01 6 99885276 99885276 C T USP45 Splice_Site p.X721_splice 0.16 TCGA-5M-AAT6-01 7 100029092 100029092 G A MEPCE Missense_Mutation p.R484H 0.19 deleterious(0) probably_damaging(0.984) TCGA-5M-AAT6-01 7 100029233 100029233 G A MEPCE Missense_Mutation p.R531Q 0.26 tolerated(0.1) probably_damaging(0.988) TCGA-5M-AAT6-01 7 100085884 100085884 C - NYAP1 Frame_Shift_Del p.P182Qfs*21 0.09 TCGA-5M-AAT6-01 7 100162766 100162766 G A AGFG2 3'UTR 0.16 TCGA-5M-AAT6-01 7 100218425 100218425 C T TFR2 3'UTR 0.17 TCGA-5M-AAT6-01 7 100456716 100456716 G A SLC12A9 Missense_Mutation p.V304I 0.15 tolerated(0.5) benign(0.001) TCGA-5M-AAT6-01 7 100465834 100465834 G A TRIP6 Silent p.A114A 0.16 TCGA-5M-AAT6-01 7 100964963 100964963 C A RABL5 Missense_Mutation p.G10W 0.17 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 7 101870843 101870843 C T CUX1 Silent p.S1120S 0.16 TCGA-5M-AAT6-01 7 101916694 101916695 AG - CUX1 Frame_Shift_Del p.E438Afs*25 0.08 TCGA-5M-AAT6-01 7 102105268 102105268 C T ALKBH4 Missense_Mutation p.A6T 0.16 tolerated_low_confidence(0.15) benign(0.026) TCGA-5M-AAT6-01 7 102246410 102246410 G A RASA4 Missense_Mutation p.T108M 0.06 tolerated(0.07) benign(0.026) TCGA-5M-AAT6-01 7 103033451 103033451 G T SLC26A5 Missense_Mutation p.A345D 0.13 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 7 103293123 103293123 T C RELN Silent p.Q546Q 0.17 TCGA-5M-AAT6-01 7 103969240 103969240 G A LHFPL3 Missense_Mutation p.A5T 0.12 tolerated_low_confidence(0.17) possibly_damaging(0.695) TCGA-5M-AAT6-01 7 104747182 104747182 T C KMT2E Missense_Mutation p.V937A 0.05 deleterious_low_confidence(0.01) benign(0.153) TCGA-5M-AAT6-01 7 105098265 105098265 G A PUS7 Missense_Mutation p.T653M 0.15 deleterious(0) benign(0.368) TCGA-5M-AAT6-01 7 105672843 105672843 C T CDHR3 Silent p.T786T 0.11 TCGA-5M-AAT6-01 7 106850826 106850826 C T COG5 Intron 0.24 TCGA-5M-AAT6-01 7 111640562 111640562 T - DOCK4 Frame_Shift_Del p.N50Tfs*15 0.13 TCGA-5M-AAT6-01 7 1131420 1131420 C T GPER1 Missense_Mutation p.A19V 0.12 tolerated_low_confidence(0.97) benign(0) TCGA-5M-AAT6-01 7 1132633 1132633 G A GPER1 3'UTR 0.18 TCGA-5M-AAT6-01 7 113517955 113517955 G A PPP1R3A Silent p.N1064N 0.16 TCGA-5M-AAT6-01 7 1195212 1195212 G A ZFAND2A Silent p.H53H 0.14 TCGA-5M-AAT6-01 7 121721616 121721617 - T AASS Frame_Shift_Ins p.L740Ifs*13 0.15 TCGA-5M-AAT6-01 7 122261558 122261558 C T CADPS2 Missense_Mutation p.V361M 0.12 deleterious(0) probably_damaging(0.956) TCGA-5M-AAT6-01 7 122763268 122763268 A G SLC13A1 Missense_Mutation p.L421P 0.11 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 7 127955067 127955067 T - RBM28 Frame_Shift_Del p.M599* 0.10 TCGA-5M-AAT6-01 7 127991348 127991348 G A PRRT4 Silent p.D754D 0.19 TCGA-5M-AAT6-01 7 127998822 127998822 A G PRRT4 Missense_Mutation p.Y264H 0.16 tolerated_low_confidence(0.57) unknown(0) TCGA-5M-AAT6-01 7 128492926 128492926 G A FLNC Missense_Mutation p.V2017M 0.10 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 7 131912321 131912321 C T PLXNA4 Missense_Mutation p.V591I 0.09 tolerated(0.36) benign(0.041) TCGA-5M-AAT6-01 7 134916790 134916790 G T STRA8 Missense_Mutation p.Q20H 0.16 tolerated_low_confidence(0.23) benign(0.007) TCGA-5M-AAT6-01 7 134925444 134925444 T C STRA8 Silent p.S78S 0.13 TCGA-5M-AAT6-01 7 135080551 135080551 C T CNOT4 Missense_Mutation p.A322T 0.12 deleterious_low_confidence(0.03) benign(0.163) TCGA-5M-AAT6-01 7 135261153 135261153 T C NUP205 Missense_Mutation p.L160P 0.12 deleterious(0.01) probably_damaging(0.969) TCGA-5M-AAT6-01 7 135277855 135277855 G A NUP205 Missense_Mutation p.R582H 0.18 deleterious(0.02) probably_damaging(0.922) TCGA-5M-AAT6-01 7 135301911 135301911 T - NUP205 Frame_Shift_Del p.F1204Lfs*34 0.09 TCGA-5M-AAT6-01 7 135322798 135322798 T C NUP205 Silent p.A1752A 0.15 TCGA-5M-AAT6-01 7 138252344 138252344 C T TRIM24 Missense_Mutation p.A550V 0.14 tolerated(0.3) benign(0) TCGA-5M-AAT6-01 7 138603524 138603524 A - KIAA1549 Frame_Shift_Del p.L283* 0.08 TCGA-5M-AAT6-01 7 138874481 138874481 T - TTC26 3'UTR 0.40 TCGA-5M-AAT6-01 7 142919343 142919343 C T TAS2R40 Missense_Mutation p.R58C 0.17 tolerated(0.24) benign(0.001) TCGA-5M-AAT6-01 7 142962173 142962173 C T GSTK1 Silent p.R124R 0.06 TCGA-5M-AAT6-01 7 143096028 143096028 C T EPHA1 Silent p.S334S 0.06 TCGA-5M-AAT6-01 7 1474116 1474116 C T MICALL2 3'UTR 0.17 TCGA-5M-AAT6-01 7 1481878 1481878 G A MICALL2 Missense_Mutation p.P554L 0.09 tolerated(0.72) benign(0.003) TCGA-5M-AAT6-01 7 148904478 148904478 G A ZNF282 Missense_Mutation p.V250I 0.20 tolerated(0.08) benign(0.019) TCGA-5M-AAT6-01 7 148921263 148921263 C T ZNF282 Missense_Mutation p.R514C 0.15 deleterious(0.05) possibly_damaging(0.63) TCGA-5M-AAT6-01 7 149430718 149430719 GA - KRBA1 Frame_Shift_Del p.S893Lfs*5 0.08 TCGA-5M-AAT6-01 7 149480343 149480343 T C SSPO RNA 0.27 TCGA-5M-AAT6-01 7 149485977 149485977 A G SSPO RNA 0.10 TCGA-5M-AAT6-01 7 150028250 150028251 CT - ZBED6CL 3'UTR 0.12 TCGA-5M-AAT6-01 7 150029439 150029439 A G ZBED6CL 3'UTR 0.17 TCGA-5M-AAT6-01 7 150554699 150554699 G A AOC1 Missense_Mutation p.V381I 0.14 tolerated(0.09) benign(0.146) TCGA-5M-AAT6-01 7 150648899 150648899 G A KCNH2 Missense_Mutation p.R528W 0.09 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 7 150655379 150655379 C T KCNH2 Silent p.A228A 0.15 TCGA-5M-AAT6-01 7 150704074 150704074 G - NOS3 Frame_Shift_Del p.A641Pfs*97 0.09 TCGA-5M-AAT6-01 7 150706626 150706626 C T NOS3 Missense_Mutation p.A822V 0.11 deleterious(0.05) benign(0.035) TCGA-5M-AAT6-01 7 150716311 150716311 C T ATG9B Missense_Mutation p.A372T 0.18 deleterious(0.05) probably_damaging(0.98) TCGA-5M-AAT6-01 7 150738190 150738190 G T ABCB8 Missense_Mutation p.K496N 0.16 deleterious(0) probably_damaging(0.995) TCGA-5M-AAT6-01 7 150773972 150773972 C T FASTK Intron 0.13 TCGA-5M-AAT6-01 7 150839054 150839054 C T AGAP3 Missense_Mutation p.T625M 0.12 deleterious(0.01) probably_damaging(0.947) TCGA-5M-AAT6-01 7 150845873 150845873 T C GBX1 Missense_Mutation p.K299E 0.18 deleterious(0) probably_damaging(0.966) TCGA-5M-AAT6-01 7 1517500 1517500 G A INTS1 Missense_Mutation p.A1568V 0.22 tolerated_low_confidence(0.6) benign(0.001) TCGA-5M-AAT6-01 7 151851393 151851393 G A KMT2C Missense_Mutation p.P4033L 0.12 probably_damaging(0.987) TCGA-5M-AAT6-01 7 151859833 151859836 TTCT - KMT2C Frame_Shift_Del p.K3609Rfs*20 0.14 TCGA-5M-AAT6-01 7 1520557 1520557 T C INTS1 Missense_Mutation p.H1288R 0.15 tolerated(0.26) benign(0.011) TCGA-5M-AAT6-01 7 155095549 155095549 T C INSIG1 Intron 0.14 TCGA-5M-AAT6-01 7 157202610 157202610 C T DNAJB6 Silent p.H271H 0.19 TCGA-5M-AAT6-01 7 20766691 20766691 G A ABCB5 Missense_Mutation p.R885H 0.11 deleterious(0.02) benign(0.235) TCGA-5M-AAT6-01 7 21781605 21781605 G A DNAH11 Missense_Mutation p.G2666S 0.14 benign(0.007) TCGA-5M-AAT6-01 7 27222395 27222395 C A HOXA11 3'UTR 0.14 TCGA-5M-AAT6-01 7 27570869 27570869 T C HIBADH Missense_Mutation p.D265G 0.15 deleterious(0.04) benign(0.021) TCGA-5M-AAT6-01 7 28997562 28997562 C A AC005013.5 Intron 0.14 TCGA-5M-AAT6-01 7 2946397 2946397 G A CARD11 Missense_Mutation p.P1114S 0.19 deleterious(0) possibly_damaging(0.768) TCGA-5M-AAT6-01 7 29915499 29915499 G A WIPF3 Silent p.A48A 0.16 TCGA-5M-AAT6-01 7 30491384 30491384 G - NOD1 Frame_Shift_Del p.P550Lfs*64 0.13 TCGA-5M-AAT6-01 7 30705147 30705147 G A CRHR2 Missense_Mutation p.R169W 0.19 deleterious(0) probably_damaging(0.979) TCGA-5M-AAT6-01 7 30931622 30931622 C T FAM188B 3'UTR 0.17 TCGA-5M-AAT6-01 7 31793126 31793126 C T PDE1C Missense_Mutation p.A728T 0.13 tolerated_low_confidence(0.76) benign(0.06) TCGA-5M-AAT6-01 7 32910100 32910100 T C KBTBD2 Silent p.S243S 0.21 TCGA-5M-AAT6-01 7 33057069 33057069 A - NT5C3A Frame_Shift_Del p.F230Lfs*17 0.10 TCGA-5M-AAT6-01 7 37907456 37907456 C T NME8 Silent p.V258V 0.14 TCGA-5M-AAT6-01 7 4116664 4116664 C T SDK1 Silent p.N1015N 0.14 TCGA-5M-AAT6-01 7 4249681 4249681 C T SDK1 Missense_Mutation p.A1809V 0.23 tolerated(0.5) benign(0.005) TCGA-5M-AAT6-01 7 43483955 43483955 A G HECW1 Missense_Mutation p.Q395R 0.16 tolerated_low_confidence(0.51) benign(0.001) TCGA-5M-AAT6-01 7 44046971 44046971 G A SPDYE1 Missense_Mutation p.R246H 0.14 tolerated(0.1) benign(0.04) TCGA-5M-AAT6-01 7 44191932 44191932 C T GCK Missense_Mutation p.V102M 0.13 deleterious(0) possibly_damaging(0.648) TCGA-5M-AAT6-01 7 44268463 44268463 T C CAMK2B Missense_Mutation p.E467G 0.16 tolerated_low_confidence(0.28) benign(0.403) TCGA-5M-AAT6-01 7 44715757 44715758 - AG OGDH Intron 0.15 TCGA-5M-AAT6-01 7 45120286 45120286 C T NACAD Missense_Mutation p.V1543M 0.15 deleterious(0) probably_damaging(0.997) TCGA-5M-AAT6-01 7 45697379 45697379 C T ADCY1 Missense_Mutation p.T401M 0.11 deleterious(0) probably_damaging(0.947) TCGA-5M-AAT6-01 7 45932771 45932771 A G IGFBP1 3'UTR 0.19 TCGA-5M-AAT6-01 7 47698615 47698615 G A C7orf65 Missense_Mutation p.S82N 0.14 tolerated_low_confidence(0.06) benign(0.383) TCGA-5M-AAT6-01 7 47840333 47840333 G T PKD1L1 Missense_Mutation p.L2703I 0.15 tolerated(0.39) benign(0.102) TCGA-5M-AAT6-01 7 47842927 47842927 G A PKD1L1 Missense_Mutation p.R2615W 0.14 deleterious(0) benign(0.183) TCGA-5M-AAT6-01 7 55459556 55459556 T C LANCL2 Missense_Mutation p.L92P 0.21 deleterious(0) probably_damaging(0.99) TCGA-5M-AAT6-01 7 56088837 56088837 G A PSPH Silent p.S23S 0.09 TCGA-5M-AAT6-01 7 5942332 5942332 G A CCZ1 Missense_Mutation p.G160D 0.13 tolerated(0.29) benign(0.034) TCGA-5M-AAT6-01 7 6189855 6189855 T C USP42 Silent p.P676P 0.10 TCGA-5M-AAT6-01 7 64526690 64526690 T - SNORA22 3'Flank 0.14 TCGA-5M-AAT6-01 7 71275397 71275397 G A CALN1 Silent p.D194D 0.15 TCGA-5M-AAT6-01 7 72040392 72040392 G A TYW1B 3'UTR 0.11 TCGA-5M-AAT6-01 7 72658171 72658171 G T GTF2IRD2P1 RNA 0.13 TCGA-5M-AAT6-01 7 72658393 72658393 C T GTF2IRD2P1 RNA 0.17 TCGA-5M-AAT6-01 7 72742478 72742478 C - FKBP6 Frame_Shift_Del p.G18Afs*8 0.10 TCGA-5M-AAT6-01 7 72742632 72742632 G A FKBP6 Missense_Mutation p.V38M 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-5M-AAT6-01 7 7283233 7283233 G A C1GALT1 Missense_Mutation p.V323I 0.13 tolerated(1) benign(0.003) TCGA-5M-AAT6-01 7 73770923 73770923 C T CLIP2 Silent p.S329S 0.08 TCGA-5M-AAT6-01 7 75189070 75189070 G A HIP1 Silent p.T447T 0.16 TCGA-5M-AAT6-01 7 76126707 76126707 G A DTX2 Missense_Mutation p.A355T 0.09 tolerated(0.12) benign(0.008) TCGA-5M-AAT6-01 7 77522952 77522952 G A PHTF2 Missense_Mutation p.E25K 0.16 deleterious(0) possibly_damaging(0.792) TCGA-5M-AAT6-01 7 81346558 81346558 A G HGF Silent p.P465P 0.09 TCGA-5M-AAT6-01 7 81695784 81695784 G A CACNA2D1 Missense_Mutation p.R239C 0.11 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 7 82582077 82582077 C T PCLO Missense_Mutation p.R2731H 0.09 unknown(0) TCGA-5M-AAT6-01 7 82583062 82583062 C T PCLO Missense_Mutation p.A2403T 0.15 unknown(0) TCGA-5M-AAT6-01 7 87056148 87056148 C T ABCB4 Missense_Mutation p.R661H 0.08 tolerated(0.12) benign(0.001) TCGA-5M-AAT6-01 7 87757937 87757937 T C ADAM22 Silent p.N233N 0.10 TCGA-5M-AAT6-01 7 8790949 8790949 C T NXPH1 Silent p.G122G 0.13 TCGA-5M-AAT6-01 7 883024 883024 C T SUN1 Silent p.A175A 0.14 TCGA-5M-AAT6-01 7 92135579 92135579 T C PEX1 Missense_Mutation p.D628G 0.14 deleterious(0.01) benign(0.072) TCGA-5M-AAT6-01 7 94024344 94024344 A G COL1A2 Translation_Start_Site p.M1? 0.25 unknown(0) TCGA-5M-AAT6-01 7 94037681 94037681 G A COL1A2 Missense_Mutation p.V243M 0.08 unknown(0) TCGA-5M-AAT6-01 7 94297384 94297384 C T PEG10 3'UTR 0.16 TCGA-5M-AAT6-01 7 98550970 98550970 G A TRRAP Missense_Mutation p.V1875M 0.17 possibly_damaging(0.701) TCGA-5M-AAT6-01 7 98630651 98630651 G A SMURF1 Intron 0.08 TCGA-5M-AAT6-01 7 99054075 99054075 C T CPSF4 Silent p.Y254Y 0.11 TCGA-5M-AAT6-01 7 99366103 99366103 C A CYP3A4 Missense_Mutation p.D182Y 0.17 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 7 99689068 99689068 C T COPS6 Silent p.I256I 0.14 TCGA-5M-AAT6-01 7 99705010 99705010 C T TAF6 Silent p.P668P 0.13 TCGA-5M-AAT6-01 7 99706132 99706132 C T TAF6 Missense_Mutation p.R476H 0.12 tolerated(0.12) possibly_damaging(0.855) TCGA-5M-AAT6-01 7 99764672 99764672 C T GAL3ST4 Missense_Mutation p.R16Q 0.16 tolerated(0.18) benign(0.051) TCGA-5M-AAT6-01 7 99803001 99803001 G A STAG3 Missense_Mutation p.V1078I 0.15 tolerated(0.81) benign(0.001) TCGA-5M-AAT6-01 8 100729493 100729493 T C VPS13B Silent p.C2208C 0.07 TCGA-5M-AAT6-01 8 104340586 104340586 G T FZD6 Nonsense_Mutation p.G495* 0.08 TCGA-5M-AAT6-01 8 104413885 104413885 G A SLC25A32 Missense_Mutation p.T224I 0.09 deleterious(0.03) possibly_damaging(0.77) TCGA-5M-AAT6-01 8 104709398 104709398 T C RIMS2 Silent p.G87G 0.10 TCGA-5M-AAT6-01 8 107691456 107691456 C T OXR1 Missense_Mutation p.T81I 0.09 deleterious(0) benign(0.424) TCGA-5M-AAT6-01 8 107773354 107773354 G A ABRA Missense_Mutation p.R353C 0.08 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 8 109247236 109247236 A - EIF3E Frame_Shift_Del p.F154Lfs*13 0.10 TCGA-5M-AAT6-01 8 110255424 110255424 C T NUDCD1 Silent p.Q522Q 0.06 TCGA-5M-AAT6-01 8 110420354 110420354 A - PKHD1L1 Frame_Shift_Del p.K631Nfs*9 0.08 TCGA-5M-AAT6-01 8 110424573 110424573 T - PKHD1L1 Frame_Shift_Del p.F723Lfs*26 0.12 TCGA-5M-AAT6-01 8 110510734 110510734 A C PKHD1L1 Missense_Mutation p.D3548A 0.10 deleterious(0.04) probably_damaging(0.993) TCGA-5M-AAT6-01 8 116426202 116426202 T C TRPS1 3'UTR 0.06 TCGA-5M-AAT6-01 8 116427056 116427056 T C TRPS1 Missense_Mutation p.H1027R 0.11 tolerated(0.14) probably_damaging(0.995) TCGA-5M-AAT6-01 8 116631920 116631920 A G TRPS1 Silent p.C135C 0.11 TCGA-5M-AAT6-01 8 119123393 119123393 A C EXT1 5'UTR 0.11 TCGA-5M-AAT6-01 8 11995224 11995224 A G USP17L2 Missense_Mutation p.M349T 0.20 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 8 11995964 11995964 C T USP17L2 Silent p.P102P 0.15 TCGA-5M-AAT6-01 8 120602832 120602832 T C ENPP2 Missense_Mutation p.S426G 0.08 deleterious(0) benign(0.085) TCGA-5M-AAT6-01 8 121062020 121062020 A C DEPTOR 3'UTR 0.07 TCGA-5M-AAT6-01 8 123964983 123964984 - C ZHX2 Frame_Shift_Ins p.Q413Pfs*31 0.21 TCGA-5M-AAT6-01 8 124268292 124268292 T - ZHX1 5'UTR 0.09 TCGA-5M-AAT6-01 8 124664881 124664881 C - KLHL38 Frame_Shift_Del p.E96Rfs*12 0.10 TCGA-5M-AAT6-01 8 125072803 125072803 A G FER1L6 Silent p.G1000G 0.11 TCGA-5M-AAT6-01 8 125559349 125559349 C T NDUFB9 Nonsense_Mutation p.R135* 0.10 TCGA-5M-AAT6-01 8 12598462 12598462 A - LONRF1 Frame_Shift_Del p.L295* 0.20 TCGA-5M-AAT6-01 8 126443229 126443229 G A TRIB1 Missense_Mutation p.V29I 0.08 tolerated(0.36) benign(0.001) TCGA-5M-AAT6-01 8 128753078 128753079 - T MYC Frame_Shift_Ins p.A414Cfs*18 0.08 TCGA-5M-AAT6-01 8 128753376 128753376 T - MYC 3'UTR 0.08 TCGA-5M-AAT6-01 8 12884047 12884048 - A KIAA1456 3'UTR 0.10 TCGA-5M-AAT6-01 8 12884664 12884664 C T KIAA1456 3'UTR 0.12 TCGA-5M-AAT6-01 8 131124366 131124366 G - ASAP1 Frame_Shift_Del p.P792Lfs*20 0.10 TCGA-5M-AAT6-01 8 133826923 133826923 T C PHF20L1 Silent p.A324A 0.10 TCGA-5M-AAT6-01 8 134225186 134225186 A G WISP1 Missense_Mutation p.K50R 0.11 tolerated(0.28) possibly_damaging(0.712) TCGA-5M-AAT6-01 8 140630703 140630703 C T KCNK9 Missense_Mutation p.G308D 0.12 tolerated(0.57) benign(0.001) TCGA-5M-AAT6-01 8 142185465 142185465 C T DENND3 Silent p.G734G 0.10 TCGA-5M-AAT6-01 8 142225981 142225981 G A SLC45A4 Silent p.A555A 0.09 TCGA-5M-AAT6-01 8 142229920 142229920 G - SLC45A4 Frame_Shift_Del p.L96Sfs*232 0.10 TCGA-5M-AAT6-01 8 143558750 143558750 T C BAI1 Silent p.H409H 0.08 TCGA-5M-AAT6-01 8 143559692 143559692 C G BAI1 Missense_Mutation p.T511S 0.10 tolerated(0.45) possibly_damaging(0.621) TCGA-5M-AAT6-01 8 143560687 143560687 A T BAI1 Missense_Mutation p.D522V 0.08 deleterious(0) possibly_damaging(0.804) TCGA-5M-AAT6-01 8 143623515 143623515 T C BAI1 Missense_Mutation p.L1307P 0.09 tolerated(0.05) benign(0.177) TCGA-5M-AAT6-01 8 143781790 143781790 C T LY6K 5'UTR 0.42 TCGA-5M-AAT6-01 8 143846457 143846457 T G LYNX1 Missense_Mutation p.T86P 0.17 tolerated(0.06) probably_damaging(0.982) TCGA-5M-AAT6-01 8 144124590 144124590 C T C8orf31 Missense_Mutation p.H33Y 0.08 deleterious_low_confidence(0) benign(0.291) TCGA-5M-AAT6-01 8 144351631 144351631 C T GLI4 Missense_Mutation p.P22L 0.12 deleterious(0.03) benign(0.264) TCGA-5M-AAT6-01 8 144378802 144378802 G T ZNF696 Missense_Mutation p.K319N 0.08 deleterious(0) probably_damaging(0.977) TCGA-5M-AAT6-01 8 144657023 144657023 C T NAPRT1 Silent p.A534A 0.09 TCGA-5M-AAT6-01 8 144732440 144732440 C T ZNF623 Missense_Mutation p.T133M 0.19 tolerated(0.1) possibly_damaging(0.454) TCGA-5M-AAT6-01 8 144776180 144776180 C T ZNF707 Missense_Mutation p.T199M 0.33 deleterious(0) possibly_damaging(0.877) TCGA-5M-AAT6-01 8 144776296 144776296 G A ZNF707 Missense_Mutation p.G238R 0.14 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 8 144776463 144776463 C T ZNF707 Silent p.C293C 0.23 TCGA-5M-AAT6-01 8 144808882 144808882 G A FAM83H Missense_Mutation p.P917S 0.13 tolerated_low_confidence(0.08) benign(0.056) TCGA-5M-AAT6-01 8 144896176 144896176 C T SCRIB Missense_Mutation p.R91Q 0.11 probably_damaging(0.996) TCGA-5M-AAT6-01 8 144943950 144943950 G A EPPK1 Missense_Mutation p.R1158W 0.42 probably_damaging(0.998) TCGA-5M-AAT6-01 8 144993065 144993065 A G PLEC Missense_Mutation p.Y3779H 0.12 benign(0.046) TCGA-5M-AAT6-01 8 145011199 145011199 C T PLEC Missense_Mutation p.G265D 0.07 unknown(0) TCGA-5M-AAT6-01 8 145057766 145057766 A G PARP10 Missense_Mutation p.L664P 0.09 deleterious(0) probably_damaging(0.993) TCGA-5M-AAT6-01 8 145537843 145537843 C T HSF1 Silent p.S480S 0.07 TCGA-5M-AAT6-01 8 145698751 145698751 C T KIFC2 Missense_Mutation p.P812L 0.42 tolerated_low_confidence(1) benign(0) TCGA-5M-AAT6-01 8 145731783 145731783 C A GPT Missense_Mutation p.F375L 0.12 deleterious(0) possibly_damaging(0.778) TCGA-5M-AAT6-01 8 145736688 145736688 T - RECQL4 3'UTR 0.12 TCGA-5M-AAT6-01 8 146054962 146054962 G A ZNF7 Missense_Mutation p.E35K 0.06 deleterious(0) possibly_damaging(0.816) TCGA-5M-AAT6-01 8 1645322 1645322 G A DLGAP2 Missense_Mutation p.A856T 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-5M-AAT6-01 8 1893795 1893795 C T ARHGEF10 Missense_Mutation p.A1124V 0.07 deleterious(0) benign(0.335) TCGA-5M-AAT6-01 8 21982880 21982880 C T HR Missense_Mutation p.R565Q 0.19 tolerated(0.39) possibly_damaging(0.775) TCGA-5M-AAT6-01 8 25287197 25287197 A - KCTD9 3'UTR 0.12 TCGA-5M-AAT6-01 8 26149253 26149253 C - PPP2R2A 5'Flank 0.10 TCGA-5M-AAT6-01 8 26265596 26265596 T C BNIP3L Silent p.S146S 0.18 TCGA-5M-AAT6-01 8 27779673 27779673 G A SCARA5 Missense_Mutation p.R111W 0.15 deleterious(0) possibly_damaging(0.487) TCGA-5M-AAT6-01 8 28409242 28409242 T - FZD3 Frame_Shift_Del p.H512Mfs*8 0.12 TCGA-5M-AAT6-01 8 29007852 29007852 A G KIF13B Silent p.H528H 0.25 TCGA-5M-AAT6-01 8 30703023 30703023 T - TEX15 Frame_Shift_Del p.T1171Lfs*14 0.15 TCGA-5M-AAT6-01 8 30703516 30703516 T - TEX15 Frame_Shift_Del p.A1007Lfs*12 0.20 TCGA-5M-AAT6-01 8 38187222 38187222 T - WHSC1L1 Frame_Shift_Del p.T419Pfs*8 0.11 TCGA-5M-AAT6-01 8 41798746 41798746 T C KAT6A Missense_Mutation p.K885E 0.20 benign(0.064) TCGA-5M-AAT6-01 8 43002099 43002099 A - HGSNAT Frame_Shift_Del p.R45Dfs*5 0.08 TCGA-5M-AAT6-01 8 43147812 43147812 G A POTEA RNA 0.07 TCGA-5M-AAT6-01 8 43218243 43218243 G A AC022616.1 3'Flank 0.12 TCGA-5M-AAT6-01 8 48691608 48691608 T - PRKDC Frame_Shift_Del p.M3845Cfs*12 0.11 TCGA-5M-AAT6-01 8 48706910 48706910 G A PRKDC Silent p.S3536S 0.39 TCGA-5M-AAT6-01 8 51664630 51664630 T - SNTG1 Frame_Shift_Del p.L453Cfs*35 0.11 TCGA-5M-AAT6-01 8 53852558 53852558 C T NPBWR1 Missense_Mutation p.P31S 0.14 tolerated(0.11) benign(0.084) TCGA-5M-AAT6-01 8 54791966 54791966 C - RGS20 Frame_Shift_Del p.L107Cfs*41 0.09 TCGA-5M-AAT6-01 8 55534137 55534137 G T RP1 Missense_Mutation p.R204M 0.10 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 8 55540595 55540595 A C RP1 Missense_Mutation p.N1385H 0.11 tolerated(0.07) benign(0.139) TCGA-5M-AAT6-01 8 56015332 56015332 C T XKR4 Missense_Mutation p.A95V 0.16 tolerated(0.11) benign(0.001) TCGA-5M-AAT6-01 8 57026051 57026051 T C MOS Missense_Mutation p.E164G 0.15 deleterious(0.05) benign(0.02) TCGA-5M-AAT6-01 8 59764361 59764361 G A TOX Missense_Mutation p.P139S 0.15 tolerated(0.22) benign(0) TCGA-5M-AAT6-01 8 64100029 64100029 C T YTHDF3 Missense_Mutation p.A486V 0.40 deleterious(0) possibly_damaging(0.695) TCGA-5M-AAT6-01 8 67417719 67417719 C T C8orf46 Missense_Mutation p.A79V 0.12 tolerated(0.16) benign(0.241) TCGA-5M-AAT6-01 8 67969657 67969657 G A COPS5 Silent p.S177S 0.08 TCGA-5M-AAT6-01 8 68128882 68128882 T C ARFGEF1 Silent p.R1543R 0.11 TCGA-5M-AAT6-01 8 68942886 68942886 G A PREX2 Missense_Mutation p.G233D 0.08 tolerated(0.07) probably_damaging(0.999) TCGA-5M-AAT6-01 8 69069620 69069620 A G PREX2 Missense_Mutation p.Q1432R 0.07 tolerated(0.52) benign(0.006) TCGA-5M-AAT6-01 8 69129868 69129868 C T PREX2 Missense_Mutation p.T1541M 0.07 deleterious(0) probably_damaging(0.996) TCGA-5M-AAT6-01 8 70539486 70539486 A G SULF1 Missense_Mutation p.E631G 0.08 tolerated(0.44) benign(0.015) TCGA-5M-AAT6-01 8 72958792 72958792 T - TRPA1 Frame_Shift_Del p.T673Hfs*23 0.31 TCGA-5M-AAT6-01 8 73849680 73849680 C T KCNB2 Missense_Mutation p.T697I 0.08 tolerated_low_confidence(0.58) benign(0.001) TCGA-5M-AAT6-01 8 74203358 74203358 T C RPL7 Missense_Mutation p.K223R 0.10 deleterious(0.02) benign(0.098) TCGA-5M-AAT6-01 8 75944434 75944434 A G CRISPLD1 Missense_Mutation p.N487S 0.07 tolerated(0.12) benign(0.21) TCGA-5M-AAT6-01 8 77617489 77617489 C T ZFHX4 Missense_Mutation p.S389L 0.10 benign(0.004) TCGA-5M-AAT6-01 8 80992772 80992772 T C TPD52 5'UTR 0.44 TCGA-5M-AAT6-01 8 86358459 86358459 C T CA3 Missense_Mutation p.T199M 0.08 deleterious(0.03) probably_damaging(1) TCGA-5M-AAT6-01 8 87226599 87226599 T - SLC7A13 3'UTR 0.27 TCGA-5M-AAT6-01 8 87242279 87242279 G A SLC7A13 Silent p.C76C 0.09 TCGA-5M-AAT6-01 8 87450823 87450823 T C WWP1 Silent p.L587L 0.13 TCGA-5M-AAT6-01 8 88885612 88885612 C T DCAF4L2 Silent p.A196A 0.12 TCGA-5M-AAT6-01 8 90937330 90937330 A G OSGIN2 Missense_Mutation p.Q407R 0.10 tolerated(0.08) benign(0.016) TCGA-5M-AAT6-01 8 91657721 91657721 G A TMEM64 Missense_Mutation p.A138V 0.08 tolerated(0.33) possibly_damaging(0.516) TCGA-5M-AAT6-01 8 92090611 92090611 C T OTUD6B Nonsense_Mutation p.R145* 0.10 TCGA-5M-AAT6-01 8 92982932 92982932 G A RUNX1T1 Missense_Mutation p.A509V 0.10 deleterious(0.02) benign(0.261) TCGA-5M-AAT6-01 8 93017274 93017274 T C RUNX1T1 Intron 0.08 TCGA-5M-AAT6-01 8 94746442 94746442 G A RBM12B Missense_Mutation p.R733W 0.17 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-5M-AAT6-01 8 96167132 96167132 T C PLEKHF2 3'UTR 0.12 TCGA-5M-AAT6-01 8 97847209 97847209 G A CPQ Missense_Mutation p.A148T 0.34 deleterious(0) probably_damaging(0.95) TCGA-5M-AAT6-01 8 98288759 98288759 C A TSPYL5 3'UTR 0.06 TCGA-5M-AAT6-01 8 98289288 98289288 A G TSPYL5 Missense_Mutation p.L262P 0.16 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 8 98863639 98863639 G A LAPTM4B Silent p.P297P 0.07 TCGA-5M-AAT6-01 8 99148803 99148804 - A POP1 Frame_Shift_Ins p.S371Kfs*4 0.09 TCGA-5M-AAT6-01 8 99441941 99441941 C T KCNS2 3'UTR 0.06 TCGA-5M-AAT6-01 8 99837846 99837846 C A STK3 Intron 0.14 TCGA-5M-AAT6-01 9 100617080 100617080 C T FOXE1 Missense_Mutation p.A295V 0.16 tolerated(0.46) possibly_damaging(0.75) TCGA-5M-AAT6-01 9 101536354 101536354 G A ANKS6 Silent p.N542N 0.21 TCGA-5M-AAT6-01 9 103092344 103092344 T C TEX10 Missense_Mutation p.D453G 0.15 deleterious(0.01) benign(0.088) TCGA-5M-AAT6-01 9 104335423 104335423 T C GRIN3A 3'UTR 0.18 TCGA-5M-AAT6-01 9 104432388 104432388 A G GRIN3A Missense_Mutation p.V769A 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-5M-AAT6-01 9 107568706 107568706 G A ABCA1 Missense_Mutation p.T1427M 0.11 tolerated(0.22) benign(0.003) TCGA-5M-AAT6-01 9 108125186 108125186 A G SLC44A1 Missense_Mutation p.I329V 0.24 tolerated(0.37) benign(0.024) TCGA-5M-AAT6-01 9 110249832 110249832 C T KLF4 Silent p.A281A 0.21 TCGA-5M-AAT6-01 9 110250305 110250305 C T KLF4 Missense_Mutation p.V124M 0.17 tolerated(0.17) possibly_damaging(0.586) TCGA-5M-AAT6-01 9 111656230 111656230 G A IKBKAP Silent p.S951S 0.12 TCGA-5M-AAT6-01 9 112811047 112811047 C T AKAP2 Intron 0.12 TCGA-5M-AAT6-01 9 113192656 113192656 C T SVEP1 Missense_Mutation p.E1810K 0.10 benign(0.022) TCGA-5M-AAT6-01 9 114290082 114290082 A G ZNF483 Missense_Mutation p.E136G 0.11 deleterious(0.03) possibly_damaging(0.728) TCGA-5M-AAT6-01 9 114695180 114695180 T - UGCG Frame_Shift_Del p.L365Cfs*9 0.09 TCGA-5M-AAT6-01 9 114825285 114825285 A - SUSD1 Frame_Shift_Del p.F594Lfs*13 0.14 TCGA-5M-AAT6-01 9 114905859 114905859 G A SUSD1 Nonsense_Mutation p.R140* 0.11 TCGA-5M-AAT6-01 9 115948598 115948598 C T FKBP15 Missense_Mutation p.V477I 0.11 tolerated(0.28) benign(0.019) TCGA-5M-AAT6-01 9 116191723 116191723 G A C9orf43 3'UTR 0.18 TCGA-5M-AAT6-01 9 117004465 117004465 A G COL27A1 Splice_Site p.X946_splice 0.15 TCGA-5M-AAT6-01 9 117008171 117008171 C T COL27A1 Missense_Mutation p.P987L 0.18 unknown(0) TCGA-5M-AAT6-01 9 117052381 117052381 G - COL27A1 Frame_Shift_Del p.V1419Sfs*148 0.09 TCGA-5M-AAT6-01 9 117085616 117092385 9:117085616-117092385 - ORM2 large deletion 0.12 TCGA-5M-AAT6-01 9 117124044 117124044 C T AKNA Silent p.T688T 0.11 TCGA-5M-AAT6-01 9 119461156 119461156 G A TRIM32 Missense_Mutation p.V379M 0.07 deleterious(0.05) possibly_damaging(0.882) TCGA-5M-AAT6-01 9 119770494 119770494 C T ASTN2 Missense_Mutation p.D439N 0.12 tolerated(0.17) unknown(0) TCGA-5M-AAT6-01 9 123904543 123904543 A - CNTRL Frame_Shift_Del p.K957Rfs*16 0.13 TCGA-5M-AAT6-01 9 124062392 124062393 - T GSN Intron 0.13 TCGA-5M-AAT6-01 9 124962240 124962240 G A MORN5 3'UTR 0.16 TCGA-5M-AAT6-01 9 125627736 125627736 C T RC3H2 Missense_Mutation p.R509H 0.14 deleterious(0) probably_damaging(0.976) TCGA-5M-AAT6-01 9 125673031 125673031 C T ZBTB6 3'UTR 0.15 TCGA-5M-AAT6-01 9 125861042 125861042 A - RABGAP1 Frame_Shift_Del p.N930Tfs*15 0.27 TCGA-5M-AAT6-01 9 125898382 125898382 A C STRBP Missense_Mutation p.L571V 0.13 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 9 126144334 126144334 C T DENND1A Missense_Mutation p.A803T 0.20 tolerated_low_confidence(0.62) benign(0.001) TCGA-5M-AAT6-01 9 128283928 128283928 G A MAPKAP1 Intron 0.17 TCGA-5M-AAT6-01 9 129946283 129946283 C T RALGPS1 Intron 0.12 TCGA-5M-AAT6-01 9 130104510 130104510 A - GARNL3 Frame_Shift_Del p.A385Pfs*19 0.13 TCGA-5M-AAT6-01 9 130207073 130207073 C T ZNF79 Missense_Mutation p.A365V 0.21 deleterious(0.04) benign(0.004) TCGA-5M-AAT6-01 9 130207299 130207299 C T ZNF79 Silent p.T440T 0.21 TCGA-5M-AAT6-01 9 130592049 130592049 G - ENG Frame_Shift_Del p.R93Efs*9 0.11 TCGA-5M-AAT6-01 9 130635091 130635091 C T AK1 Missense_Mutation p.V29M 0.13 deleterious(0) probably_damaging(0.989) TCGA-5M-AAT6-01 9 131107576 131107576 T C SLC27A4 Missense_Mutation p.W102R 0.10 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 9 131343230 131343230 G A SPTAN1 Silent p.A451A 0.18 TCGA-5M-AAT6-01 9 131395148 131395148 G A SPTAN1 Missense_Mutation p.V2408I 0.22 tolerated(0.77) benign(0.018) TCGA-5M-AAT6-01 9 131750436 131750436 C - NUP188 Frame_Shift_Del p.L837Wfs*19 0.12 TCGA-5M-AAT6-01 9 131802892 131802892 G A FAM73B Missense_Mutation p.E7K 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.642) TCGA-5M-AAT6-01 9 131857835 131857835 G A CRAT Silent p.Y574Y 0.11 TCGA-5M-AAT6-01 9 132084749 132084749 T - C9orf106 RNA 0.11 TCGA-5M-AAT6-01 9 133333898 133333898 G A ASS1 Silent p.R95R 0.13 TCGA-5M-AAT6-01 9 133942345 133942345 A C LAMC3 Splice_Site p.X783_splice 0.07 TCGA-5M-AAT6-01 9 134350896 134350896 G A PRRC2B Missense_Mutation p.R1127Q 0.09 deleterious(0) benign(0.06) TCGA-5M-AAT6-01 9 134471743 134471743 G A RAPGEF1 Silent p.D709D 0.17 TCGA-5M-AAT6-01 9 135204563 135204563 T C SETX Missense_Mutation p.T808A 0.18 tolerated_low_confidence(1) benign(0) TCGA-5M-AAT6-01 9 135781326 135781326 T C TSC1 Missense_Mutation p.T547A 0.12 tolerated(0.17) benign(0.019) TCGA-5M-AAT6-01 9 135946507 135946507 C T CEL Missense_Mutation p.R543C 0.14 deleterious(0.04) possibly_damaging(0.733) TCGA-5M-AAT6-01 9 135962309 135962309 T C CELP RNA 0.05 TCGA-5M-AAT6-01 9 135977191 135977191 G A RALGDS Intron 0.10 TCGA-5M-AAT6-01 9 136198692 136198692 A G SURF6 3'UTR 0.14 TCGA-5M-AAT6-01 9 137309025 137309025 G A RXRA Missense_Mutation p.R211H 0.18 deleterious(0) possibly_damaging(0.84) TCGA-5M-AAT6-01 9 138378800 138378800 A G PPP1R26 Missense_Mutation p.Q815R 0.11 tolerated(0.51) possibly_damaging(0.607) TCGA-5M-AAT6-01 9 138395500 138395500 C T MRPS2 Missense_Mutation p.R138C 0.10 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 9 138714031 138714031 T C CAMSAP1 Missense_Mutation p.N826D 0.08 tolerated(0.06) benign(0.341) TCGA-5M-AAT6-01 9 139262213 139262213 C T CARD9 Missense_Mutation p.R382H 0.18 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 9 139324017 139324017 G A INPP5E 3'UTR 0.29 TCGA-5M-AAT6-01 9 139342335 139342335 C T SEC16A Silent p.Q2139Q 0.20 TCGA-5M-AAT6-01 9 139396526 139396526 G A NOTCH1 Missense_Mutation p.A1800V 0.18 tolerated(0.39) benign(0.003) TCGA-5M-AAT6-01 9 139405118 139405118 G A NOTCH1 Silent p.D909D 0.12 TCGA-5M-AAT6-01 9 139840158 139840158 G A C8G Missense_Mutation p.E71K 0.18 deleterious(0.04) benign(0.306) TCGA-5M-AAT6-01 9 139905460 139905460 G T ABCA2 Silent p.T2007T 0.08 TCGA-5M-AAT6-01 9 139906416 139906416 G T ABCA2 Missense_Mutation p.F1805L 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-5M-AAT6-01 9 139960054 139960054 G A SAPCD2 Missense_Mutation p.R251W 0.09 deleterious(0) probably_damaging(0.989) TCGA-5M-AAT6-01 9 140053109 140053109 G A GRIN1 Missense_Mutation p.G405R 0.14 tolerated(0.21) possibly_damaging(0.716) TCGA-5M-AAT6-01 9 140135834 140135834 C T TUBB4B Nonsense_Mutation p.Q8* 0.15 TCGA-5M-AAT6-01 9 140174563 140174563 T C TOR4A 3'UTR 0.23 TCGA-5M-AAT6-01 9 140373605 140373605 C T PNPLA7 Missense_Mutation p.R889H 0.12 tolerated(0.06) benign(0.063) TCGA-5M-AAT6-01 9 14740209 14740210 AC - FREM1 Frame_Shift_Del p.V2093Ifs*37 0.13 TCGA-5M-AAT6-01 9 14859205 14859205 G T FREM1 Missense_Mutation p.P203T 0.15 deleterious(0.04) possibly_damaging(0.806) TCGA-5M-AAT6-01 9 19050932 19050932 C T RRAGA 3'UTR 0.14 TCGA-5M-AAT6-01 9 19116507 19116507 G A PLIN2 Silent p.G351G 0.11 TCGA-5M-AAT6-01 9 2077644 2077644 C T SMARCA2 Silent p.D684D 0.09 TCGA-5M-AAT6-01 9 20865923 20865923 A C FOCAD Splice_Site p.X686_splice 0.14 TCGA-5M-AAT6-01 9 214463 214463 G - C9orf66 3'UTR 0.10 TCGA-5M-AAT6-01 9 2191298 2191298 A - SMARCA2 Frame_Shift_Del p.D1545Mfs*22 0.13 TCGA-5M-AAT6-01 9 2191375 2191375 C T SMARCA2 Silent p.S1568S 0.12 TCGA-5M-AAT6-01 9 2729494 2729494 C A KCNV2 Missense_Mutation p.L469M 0.11 deleterious(0) probably_damaging(0.967) TCGA-5M-AAT6-01 9 27297079 27297079 T G EQTN 5'UTR 0.18 TCGA-5M-AAT6-01 9 27950530 27950530 C T LINGO2 Missense_Mutation p.R47Q 0.14 tolerated(0.1) probably_damaging(0.99) TCGA-5M-AAT6-01 9 334292 334292 G A DOCK8 Missense_Mutation p.R398Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 9 33676688 33676688 A G PTENP1 RNA 0.13 TCGA-5M-AAT6-01 9 33798579 33798579 T C PRSS3 Missense_Mutation p.F241L 0.06 tolerated(0.23) benign(0.088) TCGA-5M-AAT6-01 9 34107391 34107391 C T DCAF12 Missense_Mutation p.R169Q 0.12 tolerated(1) benign(0.007) TCGA-5M-AAT6-01 9 34610918 34610918 G T RPP25L Missense_Mutation p.L126M 0.14 deleterious(0.03) probably_damaging(0.98) TCGA-5M-AAT6-01 9 35059635 35059635 A G VCP Missense_Mutation p.I620T 0.19 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 9 35720887 35720887 G A TLN1 Silent p.G376G 0.12 TCGA-5M-AAT6-01 9 35792795 35792795 G A NPR2 Silent p.S130S 0.13 TCGA-5M-AAT6-01 9 36246343 36246343 G A GNE Missense_Mutation p.R132C 0.14 deleterious(0) probably_damaging(0.984) TCGA-5M-AAT6-01 9 4118025 4118025 C T GLIS3 Missense_Mutation p.A485T 0.11 tolerated(0.41) benign(0.007) TCGA-5M-AAT6-01 9 4286147 4286147 A G GLIS3 Silent p.N93N 0.14 TCGA-5M-AAT6-01 9 5797866 5797866 G C ERMP1 Silent p.S779S 0.17 TCGA-5M-AAT6-01 9 6014111 6014111 G A RANBP6 Silent p.S499S 0.16 TCGA-5M-AAT6-01 9 6493878 6493878 G T UHRF2 Missense_Mutation p.G517V 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 9 70177694 70177694 G A FOXD4L5 Missense_Mutation p.A97V 0.03 tolerated(0.16) possibly_damaging(0.689) TCGA-5M-AAT6-01 9 71853703 71853703 C T TJP2 Nonsense_Mutation p.Q816* 0.11 TCGA-5M-AAT6-01 9 72082777 72082777 G A APBA1 Missense_Mutation p.R482C 0.15 deleterious(0) probably_damaging(0.93) TCGA-5M-AAT6-01 9 73236190 73236190 C T TRPM3 Splice_Site p.X592_splice 0.13 TCGA-5M-AAT6-01 9 74477464 74477464 T C ABHD17B 3'UTR 0.13 TCGA-5M-AAT6-01 9 75545858 75545858 G A ALDH1A1 Silent p.S83S 0.15 TCGA-5M-AAT6-01 9 79324806 79324806 G A PRUNE2 Missense_Mutation p.A795V 0.12 tolerated(0.33) benign(0.002) TCGA-5M-AAT6-01 9 82323047 82323047 T C TLE4 Silent p.T317T 0.11 TCGA-5M-AAT6-01 9 86914616 86914616 T G SLC28A3 Silent p.L183L 0.07 TCGA-5M-AAT6-01 9 88961380 88961380 C A ZCCHC6 Missense_Mutation p.R179M 0.15 deleterious(0) benign(0.326) TCGA-5M-AAT6-01 9 90344535 90344535 C T CTSL Silent p.T223T 0.12 TCGA-5M-AAT6-01 9 91617659 91617659 T C S1PR3 3'UTR 0.11 TCGA-5M-AAT6-01 9 94499744 94499744 C T ROR2 Missense_Mutation p.R184H 0.13 deleterious(0) probably_damaging(0.911) TCGA-5M-AAT6-01 9 95086323 95086323 T C NOL8 Missense_Mutation p.T41A 0.15 deleterious(0.02) possibly_damaging(0.812) TCGA-5M-AAT6-01 9 95142089 95142090 - T CENPP Frame_Shift_Ins p.V174Cfs*5 0.16 TCGA-5M-AAT6-01 9 95179572 95179572 G A OMD Missense_Mutation p.P90L 0.16 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 9 95477308 95477308 G A BICD2 3'UTR 0.16 TCGA-5M-AAT6-01 9 95481194 95481194 C T BICD2 Missense_Mutation p.R578H 0.21 tolerated(0.08) benign(0.003) TCGA-5M-AAT6-01 9 95870078 95870078 A G C9orf89 Missense_Mutation p.T44A 0.12 tolerated(0.08) benign(0.01) TCGA-5M-AAT6-01 9 96080207 96080207 C - WNK2 Frame_Shift_Del p.T2267Pfs*49 0.22 TCGA-5M-AAT6-01 9 96289498 96289498 C T FAM120A Nonsense_Mutation p.R494* 0.15 TCGA-5M-AAT6-01 9 97321411 97321411 G A FBP2 Missense_Mutation p.R277W 0.12 deleterious(0) benign(0.365) TCGA-5M-AAT6-01 9 98209423 98209423 G A PTCH1 Missense_Mutation p.T1372M 0.10 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-5M-AAT6-01 9 98740437 98740437 C T ERCC6L2 Silent p.D116D 0.13 TCGA-5M-AAT6-01 9 98775458 98775458 C T ERCC6L2 Silent p.N514N 0.11 TCGA-5M-AAT6-01 X 100513321 100513321 G A DRP2 Missense_Mutation p.R805H 0.12 deleterious(0) possibly_damaging(0.88) TCGA-5M-AAT6-01 X 100809374 100809374 T - ARMCX1 3'UTR 0.11 TCGA-5M-AAT6-01 X 100871244 100871244 A T ARMCX6 Missense_Mutation p.C123S 0.09 tolerated(0.22) benign(0.064) TCGA-5M-AAT6-01 X 10098006 10098006 G T WWC3 Missense_Mutation p.A815S 0.17 tolerated(0.14) possibly_damaging(0.836) TCGA-5M-AAT6-01 X 101572425 101572425 C T NXF2 Missense_Mutation p.P108L 0.15 tolerated(0.58) benign(0.002) TCGA-5M-AAT6-01 X 10180628 10180628 G A CLCN4 Missense_Mutation p.C504Y 0.12 deleterious(0) probably_damaging(0.973) TCGA-5M-AAT6-01 X 101970978 101970978 A - GPRASP2 Frame_Shift_Del p.E396Rfs*68 0.12 TCGA-5M-AAT6-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.12 TCGA-5M-AAT6-01 X 10535294 10535294 G A MID1 Silent p.S98S 0.20 TCGA-5M-AAT6-01 X 105881144 105881144 T C CXorf57 Silent p.S521S 0.10 TCGA-5M-AAT6-01 X 106117115 106117115 T - TBC1D8B Frame_Shift_Del p.F1096Lfs*5 0.11 TCGA-5M-AAT6-01 X 106845120 106845120 C A FRMPD3 Missense_Mutation p.P1317H 0.12 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 X 107225313 107225313 T C TEX13B Silent p.G15G 0.08 TCGA-5M-AAT6-01 X 107370156 107370156 C T ATG4A Intron 0.15 TCGA-5M-AAT6-01 X 107976160 107976160 C T IRS4 Missense_Mutation p.A1139T 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-5M-AAT6-01 X 107977929 107977929 C T IRS4 Missense_Mutation p.G549D 0.18 deleterious_low_confidence(0) unknown(0) TCGA-5M-AAT6-01 X 108867876 108867876 C T KCNE1L Missense_Mutation p.R125H 0.11 tolerated_low_confidence(0.29) benign(0.001) TCGA-5M-AAT6-01 X 109937472 109937472 G A CHRDL1 Missense_Mutation p.R233W 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-5M-AAT6-01 X 111698718 111698718 A G ZCCHC16 Silent p.K254K 0.08 TCGA-5M-AAT6-01 X 112059024 112059024 C - AMOT Frame_Shift_Del p.S319Pfs*56 0.09 TCGA-5M-AAT6-01 X 115590376 115590376 C T SLC6A14 3'UTR 0.14 TCGA-5M-AAT6-01 X 118377228 118377228 G T PGRMC1 3'UTR 0.08 TCGA-5M-AAT6-01 X 119004876 119004876 C T RNF113A Missense_Mutation p.R234H 0.12 deleterious(0) possibly_damaging(0.588) TCGA-5M-AAT6-01 X 123785976 123785976 T G TENM1 Splice_Site p.X457_splice 0.15 TCGA-5M-AAT6-01 X 125686201 125686201 C T DCAF12L1 Missense_Mutation p.A131T 0.11 tolerated(1) benign(0) TCGA-5M-AAT6-01 X 125686744 125686744 C T DCAF12L1 5'UTR 0.14 TCGA-5M-AAT6-01 X 128926432 128926432 C A SASH3 Missense_Mutation p.H191N 0.15 tolerated(0.33) benign(0.017) TCGA-5M-AAT6-01 X 129168635 129168635 C T BCORL1 Intron 0.18 TCGA-5M-AAT6-01 X 129205352 129205352 T C ELF4 Missense_Mutation p.D192G 0.17 tolerated(0.09) probably_damaging(0.937) TCGA-5M-AAT6-01 X 129263960 129263960 C T AIFM1 Missense_Mutation p.M585I 0.11 tolerated(0.21) benign(0.114) TCGA-5M-AAT6-01 X 12937459 12937459 A G TLR8 Silent p.V100V 0.04 TCGA-5M-AAT6-01 X 129518563 129518563 G A GPR119 Nonsense_Mutation p.R287* 0.17 TCGA-5M-AAT6-01 X 129518613 129518613 C T GPR119 Missense_Mutation p.G270D 0.10 tolerated(0.19) benign(0.392) TCGA-5M-AAT6-01 X 129546638 129546638 A - RBMX2 Frame_Shift_Del p.K263Rfs*90 0.11 TCGA-5M-AAT6-01 X 129813640 129813640 C A ENOX2 Missense_Mutation p.E141D 0.16 tolerated(0.08) probably_damaging(0.997) TCGA-5M-AAT6-01 X 130419949 130419949 C T IGSF1 Nonsense_Mutation p.W57* 0.15 TCGA-5M-AAT6-01 X 130678510 130678510 C T OR13H1 Missense_Mutation p.L155F 0.06 tolerated(0.1) benign(0.367) TCGA-5M-AAT6-01 X 131573687 131573687 A G MBNL3 5'UTR 0.12 TCGA-5M-AAT6-01 X 132159318 132159318 G T USP26 3'UTR 0.24 TCGA-5M-AAT6-01 X 132826456 132826456 G A GPC3 Silent p.S434S 0.11 TCGA-5M-AAT6-01 X 133979252 133979255 AATA - FAM122C Frame_Shift_Del p.N90Efs*15 0.12 TCGA-5M-AAT6-01 X 134156202 134156202 G A FAM127C Silent p.G96G 0.12 TCGA-5M-AAT6-01 X 134185378 134185378 G A FAM127B 3'UTR 0.12 TCGA-5M-AAT6-01 X 134185876 134185876 C T FAM127B Missense_Mutation p.S88N 0.13 deleterious(0.03) possibly_damaging(0.753) TCGA-5M-AAT6-01 X 134303538 134303538 A G CT55 Missense_Mutation p.Y87H 0.12 tolerated(1) benign(0) TCGA-5M-AAT6-01 X 135758801 135758801 C G ARHGEF6 Missense_Mutation p.E643Q 0.11 deleterious(0.02) possibly_damaging(0.529) TCGA-5M-AAT6-01 X 13792502 13792502 T C GPM6B Intron 0.13 TCGA-5M-AAT6-01 X 140271260 140271260 G A LDOC1 5'UTR 0.10 TCGA-5M-AAT6-01 X 140984440 140984440 T C MAGEC3 Intron 0.11 TCGA-5M-AAT6-01 X 140994825 140994825 T C MAGEC1 Silent p.P545P 0.04 TCGA-5M-AAT6-01 X 140996139 140996139 C A MAGEC1 Silent p.T983T 0.10 TCGA-5M-AAT6-01 X 142717967 142717967 C T SLITRK4 Missense_Mutation p.A320T 0.13 tolerated(0.73) benign(0.001) TCGA-5M-AAT6-01 X 142967930 142967930 C - UBE2NL 3'UTR 0.10 TCGA-5M-AAT6-01 X 142968342 142968342 T - UBE2NL 3'UTR 0.10 TCGA-5M-AAT6-01 X 149818283 149818284 - A MTM1 Frame_Shift_Ins p.V324Sfs*8 0.16 TCGA-5M-AAT6-01 X 151092433 151092433 G A MAGEA4 Silent p.S99S 0.11 TCGA-5M-AAT6-01 X 151283977 151283977 A G RP11-1007I13.4 RNA 0.11 TCGA-5M-AAT6-01 X 152101461 152101461 C T ZNF185 Missense_Mutation p.T355M 0.13 tolerated(0.44) benign(0.026) TCGA-5M-AAT6-01 X 152227516 152227516 C A PNMA3 3'UTR 0.15 TCGA-5M-AAT6-01 X 152481694 152481694 T - MAGEA1 3'UTR 0.09 TCGA-5M-AAT6-01 X 152719953 152719953 A G HAUS7 Missense_Mutation p.V325A 0.10 tolerated(0.11) benign(0.024) TCGA-5M-AAT6-01 X 152826280 152826280 G A ATP2B3 Missense_Mutation p.V996M 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-5M-AAT6-01 X 152853676 152853676 C T FAM58A 3'UTR 0.16 TCGA-5M-AAT6-01 X 153040557 153040557 C T PLXNB3 Missense_Mutation p.T1408M 0.18 deleterious(0.01) possibly_damaging(0.888) TCGA-5M-AAT6-01 X 153044673 153044673 C - PLXNB3 3'UTR 0.16 TCGA-5M-AAT6-01 X 153070087 153070087 C - PDZD4 Frame_Shift_Del p.G344Afs*63 0.09 TCGA-5M-AAT6-01 X 153070273 153070273 C T PDZD4 Missense_Mutation p.R282Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-5M-AAT6-01 X 153137740 153137740 C T L1CAM Silent p.S89S 0.15 TCGA-5M-AAT6-01 X 153141331 153141331 G A L1CAM 5'UTR 0.12 TCGA-5M-AAT6-01 X 153171916 153171916 C T AVPR2 Intron 0.14 TCGA-5M-AAT6-01 X 153178880 153178880 C T ARHGAP4 Missense_Mutation p.E477K 0.13 deleterious(0) possibly_damaging(0.777) TCGA-5M-AAT6-01 X 153588957 153588957 T C FLNA Splice_Site p.X1070_splice 0.18 TCGA-5M-AAT6-01 X 153690556 153690556 C T PLXNA3 Missense_Mutation p.A408V 0.13 tolerated(0.62) benign(0.419) TCGA-5M-AAT6-01 X 153694296 153694296 C T PLXNA3 Missense_Mutation p.P851S 0.09 deleterious(0.01) probably_damaging(1) TCGA-5M-AAT6-01 X 153715983 153715983 G A SLC10A3 Silent p.L433L 0.14 TCGA-5M-AAT6-01 X 15474003 15474003 C T PIR Missense_Mutation p.A150T 0.15 tolerated(0.06) benign(0.016) TCGA-5M-AAT6-01 X 18259366 18259366 T - SCML2 3'UTR 0.10 TCGA-5M-AAT6-01 X 19389485 19389485 A G MAP3K15 Missense_Mutation p.V1091A 0.13 tolerated(0.26) benign(0.021) TCGA-5M-AAT6-01 X 21392988 21392988 C T CNKSR2 5'UTR 0.13 TCGA-5M-AAT6-01 X 21674307 21674307 G A KLHL34 Nonsense_Mutation p.R534* 0.16 TCGA-5M-AAT6-01 X 21874794 21874794 G A YY2 Silent p.P64P 0.13 TCGA-5M-AAT6-01 X 24608198 24608198 T C PCYT1B Missense_Mutation p.D143G 0.06 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 X 24753559 24753559 G A POLA1 Missense_Mutation p.G620D 0.12 tolerated(0.08) probably_damaging(0.91) TCGA-5M-AAT6-01 X 24906154 24906154 G A POLA1 Missense_Mutation p.R1354H 0.07 tolerated(0.13) benign(0.008) TCGA-5M-AAT6-01 X 27998798 27998799 - A DCAF8L1 Frame_Shift_Ins p.L218Ffs*18 0.10 TCGA-5M-AAT6-01 X 2867535 2867535 C T ARSE Missense_Mutation p.V222I 0.14 tolerated(0.28) benign(0.003) TCGA-5M-AAT6-01 X 2928126 2928126 G A ARSH Missense_Mutation p.A50T 0.12 deleterious(0.02) possibly_damaging(0.697) TCGA-5M-AAT6-01 X 30254097 30254097 G A MAGEB3 Missense_Mutation p.R19Q 0.13 tolerated(0.46) benign(0.025) TCGA-5M-AAT6-01 X 30849579 30849579 G A TAB3 Missense_Mutation p.R702C 0.11 deleterious(0) probably_damaging(0.998) TCGA-5M-AAT6-01 X 3228396 3228396 G A MXRA5 Silent p.C2616C 0.15 TCGA-5M-AAT6-01 X 3235525 3235525 T C MXRA5 Missense_Mutation p.H2066R 0.07 tolerated(0.12) probably_damaging(0.969) TCGA-5M-AAT6-01 X 37312681 37312681 G A PRRG1 Missense_Mutation p.R155H 0.15 tolerated(0.22) benign(0.004) TCGA-5M-AAT6-01 X 37655296 37655296 C A CYBB Silent p.S192S 0.10 TCGA-5M-AAT6-01 X 38020284 38020284 G - SRPX Frame_Shift_Del p.P226Qfs*32 0.09 TCGA-5M-AAT6-01 X 38664322 38664322 G A MID1IP1 Silent p.V41V 0.12 TCGA-5M-AAT6-01 X 39933692 39933692 C T BCOR Missense_Mutation p.A303T 0.18 tolerated(0.43) benign(0.003) TCGA-5M-AAT6-01 X 47032551 47032551 G A RBM10 Missense_Mutation p.G153S 0.20 deleterious(0) possibly_damaging(0.786) TCGA-5M-AAT6-01 X 47479110 47479110 G C SYN1 Silent p.R6R 0.13 TCGA-5M-AAT6-01 X 47500865 47500865 C T ELK1 5'UTR 0.08 TCGA-5M-AAT6-01 X 48211551 48211551 T C SSX3 Missense_Mutation p.Q105R 0.10 tolerated(0.07) benign(0.046) TCGA-5M-AAT6-01 X 48375570 48375570 G T PORCN Splice_Site p.X392_splice 0.15 TCGA-5M-AAT6-01 X 48398254 48398256 GGC - TBC1D25 In_Frame_Del p.A28del 0.10 TCGA-5M-AAT6-01 X 48417378 48417378 C T TBC1D25 Missense_Mutation p.A161V 0.12 tolerated(0.18) benign(0.002) TCGA-5M-AAT6-01 X 48780995 48780995 G A OTUD5 Silent p.A503A 0.13 TCGA-5M-AAT6-01 X 48858660 48858660 C T GRIPAP1 5'UTR 0.13 TCGA-5M-AAT6-01 X 48933235 48933235 G A WDR45 Missense_Mutation p.R233C 0.09 deleterious(0) probably_damaging(1) TCGA-5M-AAT6-01 X 48972117 48972117 G T GPKOW Silent p.T391T 0.15 TCGA-5M-AAT6-01 X 49019246 49019246 G T MAGIX Missense_Mutation p.G7C 0.10 deleterious_low_confidence(0) benign(0.425) TCGA-5M-AAT6-01 X 49099878 49099878 C T CCDC22 Missense_Mutation p.R222W 0.12 tolerated(0.29) possibly_damaging(0.67) TCGA-5M-AAT6-01 X 49142888 49142888 G A PPP1R3F Missense_Mutation p.G579D 0.19 tolerated_low_confidence(0.13) benign(0.02) TCGA-5M-AAT6-01 X 49645919 49645919 C T USP27X Missense_Mutation p.P337S 0.09 deleterious(0) probably_damaging(0.97) TCGA-5M-AAT6-01 X 50136242 50136242 G A DGKK RNA 0.13 TCGA-5M-AAT6-01 X 51239218 51239218 T C NUDT11 Missense_Mutation p.S27G 0.12 tolerated(0.17) benign(0.001) TCGA-5M-AAT6-01 X 53456651 53456651 A G RIBC1 Intron 0.13 TCGA-5M-AAT6-01 X 53586394 53586394 G A HUWE1 Silent p.D2612D 0.11 TCGA-5M-AAT6-01 X 55028781 55028781 T A APEX2 Nonsense_Mutation p.Y113* 0.12 TCGA-5M-AAT6-01 X 55033693 55033693 C T APEX2 Missense_Mutation p.A461V 0.10 tolerated(0.22) benign(0.042) TCGA-5M-AAT6-01 X 55035579 55035579 G A ALAS2 3'UTR 0.14 TCGA-5M-AAT6-01 X 66931371 66931371 G A AR Silent p.Q671Q 0.13 TCGA-5M-AAT6-01 X 67940236 67940236 C T STARD8 Missense_Mutation p.R674C 0.12 deleterious(0) possibly_damaging(0.816) TCGA-5M-AAT6-01 X 69522219 69522219 C T KIF4A Missense_Mutation p.T250I 0.14 deleterious(0) probably_damaging(0.955) TCGA-5M-AAT6-01 X 70355011 70355011 A G MED12 Missense_Mutation p.T1645A 0.13 benign(0.054) TCGA-5M-AAT6-01 X 70445056 70445056 G C GJB1 3'UTR 0.08 TCGA-5M-AAT6-01 X 70680550 70680550 C T TAF1 Missense_Mutation p.L1786F 0.16 tolerated_low_confidence(0.06) benign(0.413) TCGA-5M-AAT6-01 X 71494592 71494592 C T RPS4X Intron 0.20 TCGA-5M-AAT6-01 X 73745604 73745604 A G SLC16A2 Missense_Mutation p.E349G 0.12 tolerated(0.15) benign(0.11) TCGA-5M-AAT6-01 X 73964161 73964161 C T KIAA2022 Silent p.P77P 0.07 TCGA-5M-AAT6-01 X 76938738 76938738 A G ATRX Silent p.T670T 0.10 TCGA-5M-AAT6-01 X 77528446 77528446 G T CYSLTR1 Silent p.P266P 0.12 TCGA-5M-AAT6-01 X 80457643 80457643 T C SH3BGRL 5'UTR 0.14 TCGA-5M-AAT6-01 X 84362660 84362660 G A SATL1 Nonsense_Mutation p.R439* 0.13 TCGA-5M-AAT6-01 X 85994753 85994753 C T DACH2 Missense_Mutation p.R370W 0.11 deleterious(0) probably_damaging(0.968) TCGA-5M-AAT6-01 X 86069720 86069720 A - DACH2 Frame_Shift_Del p.T525Pfs*33 0.12 TCGA-5M-AAT6-01 X 86773281 86773281 A G KLHL4 Missense_Mutation p.M129V 0.13 tolerated(0.64) benign(0.011) TCGA-5M-AAT6-01 X 90689826 90689826 C T PABPC5 5'UTR 0.11 TCGA-5M-AAT6-01 X 91090594 91090594 C T PCDH11X Nonsense_Mutation p.R31* 0.12 TCGA-5M-AAT6-01 X 91132066 91132066 C T PCDH11X Missense_Mutation p.A276V 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-5M-AAT6-01 X 96139539 96139540 - G RPA4 Frame_Shift_Ins p.V79Gfs*17 0.08 TCGA-5M-AAT6-01 X 9656190 9656190 C T TBL1X Missense_Mutation p.A164V 0.10 tolerated(0.23) benign(0.001) TCGA-5M-AAT6-01 X 99890742 99890742 A G TSPAN6 Missense_Mutation p.I30T 0.13 deleterious(0) possibly_damaging(0.493) TCGA-5M-AATA-01 10 114912188 114912188 C T TCF7L2 Missense_Mutation p.R420W 0.34 deleterious(0) probably_damaging(0.999) TCGA-5M-AATA-01 10 13239691 13239691 G T MCM10 Missense_Mutation p.K682N 0.16 deleterious(0.01) possibly_damaging(0.497) TCGA-5M-AATA-01 10 50098714 50098714 G A WDFY4 Missense_Mutation p.E2420K 0.29 deleterious(0) possibly_damaging(0.852) TCGA-5M-AATA-01 10 81053579 81053579 T A ZMIZ1 Intron 0.16 TCGA-5M-AATA-01 11 110108290 110108290 C T RDX Missense_Mutation p.R393H 0.25 tolerated(0.06) probably_damaging(0.961) TCGA-5M-AATA-01 11 125853840 125853840 G A CDON Silent p.G974G 0.18 TCGA-5M-AATA-01 11 18631617 18631617 G A SPTY2D1 Intron 0.20 TCGA-5M-AATA-01 11 34938313 34938313 A G PDHX Silent p.V37V 0.18 TCGA-5M-AATA-01 11 46396984 46396984 C T DGKZ Silent p.A759A 0.24 TCGA-5M-AATA-01 11 56128295 56128298 TACT - OR8J1 Frame_Shift_Del p.L194Qfs*17 0.32 TCGA-5M-AATA-01 11 6622403 6622403 C T RRP8 Missense_Mutation p.R298H 0.25 tolerated(0.13) possibly_damaging(0.849) TCGA-5M-AATA-01 11 73068356 73068356 C T ARHGEF17 Silent p.D1357D 0.32 TCGA-5M-AATA-01 11 93097454 93097455 - TT CCDC67 Frame_Shift_Ins p.L143Ffs*2 0.14 TCGA-5M-AATA-01 12 104851102 104851102 C T CHST11 5'UTR 0.29 TCGA-5M-AATA-01 12 114377814 114377814 A T RBM19 Missense_Mutation p.L630Q 0.28 deleterious(0.01) benign(0.105) TCGA-5M-AATA-01 12 132685743 132685743 G T GALNT9 Missense_Mutation p.R77S 0.26 deleterious(0) benign(0.166) TCGA-5M-AATA-01 12 57908745 57908745 A G MARS Missense_Mutation p.D703G 0.26 deleterious(0) benign(0.011) TCGA-5M-AATA-01 12 96361564 96361564 C T AMDHD1 Silent p.G408G 0.26 TCGA-5M-AATA-01 13 96375597 96375597 C T DNAJC3 Nonsense_Mutation p.Q99* 0.27 TCGA-5M-AATA-01 14 51190156 51190156 A G NIN 3'Flank 0.45 TCGA-5M-AATA-01 15 26792818 26792818 C T GABRB3 3'UTR 0.42 TCGA-5M-AATA-01 15 50935562 50935562 C A TRPM7 Missense_Mutation p.W170C 0.26 deleterious(0) probably_damaging(0.999) TCGA-5M-AATA-01 15 52186028 52186028 A G TMOD3 Silent p.E171E 0.34 TCGA-5M-AATA-01 15 81593746 81593746 G A IL16 Missense_Mutation p.D1071N 0.24 tolerated(0.25) benign(0.002) TCGA-5M-AATA-01 15 82335686 82335686 C T MEX3B Missense_Mutation p.G509R 0.29 tolerated(0.07) probably_damaging(0.998) TCGA-5M-AATA-01 16 20497994 20497994 G T ACSM2A Silent p.A576A 0.28 TCGA-5M-AATA-01 16 31392226 31392226 G C ITGAX Silent p.T1095T 0.10 TCGA-5M-AATA-01 16 34739561 34739561 A T RP11-80F22.15 RNA 0.35 TCGA-5M-AATA-01 16 89258662 89258662 C T CDH15 Silent p.H555H 0.50 TCGA-5M-AATA-01 17 33801988 33801988 C T SLFN12L Missense_Mutation p.R574H 0.39 tolerated_low_confidence(0.06) unknown(0) TCGA-5M-AATA-01 17 39551797 39551797 G A KRT31 Missense_Mutation p.R223W 0.28 deleterious(0.01) possibly_damaging(0.846) TCGA-5M-AATA-01 17 42743907 42743907 C T C17orf104 Missense_Mutation p.R210C 0.32 deleterious(0.01) benign(0.02) TCGA-5M-AATA-01 17 4995552 4995552 A G ZFP3 Silent p.K251K 0.41 TCGA-5M-AATA-01 17 54671773 54671773 G A NOG Silent p.E63E 0.26 TCGA-5M-AATA-01 17 61432471 61432471 A T TANC2 Nonsense_Mutation p.K694* 0.18 TCGA-5M-AATA-01 17 61949460 61949460 T A CSH2 3'UTR 0.29 TCGA-5M-AATA-01 17 67075030 67075030 A C ABCA6 3'UTR 0.43 TCGA-5M-AATA-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.44 deleterious(0) probably_damaging(0.998) TCGA-5M-AATA-01 17 79205719 79205719 G A ENTHD2 Missense_Mutation p.S210L 0.38 deleterious(0) benign(0.259) TCGA-5M-AATA-01 19 11339659 11339659 C T DOCK6 Missense_Mutation p.R924H 0.23 deleterious(0) probably_damaging(0.985) TCGA-5M-AATA-01 19 19764633 19764633 G A ATP13A1 Missense_Mutation p.A687V 0.13 deleterious(0) probably_damaging(0.999) TCGA-5M-AATA-01 19 30935992 30935992 C T ZNF536 Missense_Mutation p.A508V 0.29 deleterious(0) probably_damaging(0.994) TCGA-5M-AATA-01 19 36214848 36214848 T C KMT2B Missense_Mutation p.S1092P 0.37 probably_damaging(0.91) TCGA-5M-AATA-01 19 36246683 36246683 T G HSPB6 Missense_Mutation p.E104A 0.17 tolerated(0.09) possibly_damaging(0.549) TCGA-5M-AATA-01 19 3816720 3816720 C T ZFR2 Silent p.T685T 0.33 TCGA-5M-AATA-01 19 38632032 38632032 C A SIPA1L3 Missense_Mutation p.P1118T 0.22 tolerated(0.3) benign(0.001) TCGA-5M-AATA-01 19 44006355 44006355 C T PHLDB3 Silent p.A98A 0.16 TCGA-5M-AATA-01 19 51165558 51165558 G A SHANK1 Silent p.F2050F 0.40 TCGA-5M-AATA-01 19 58050031 58050031 C T ZNF549 Silent p.G553G 0.31 TCGA-5M-AATA-01 19 58290167 58290167 C T ZNF586 Missense_Mutation p.T71M 0.31 tolerated(0.13) benign(0.078) TCGA-5M-AATA-01 19 8197890 8197890 C T FBN3 Silent p.A564A 0.18 TCGA-5M-AATA-01 1 103488445 103488445 G A COL11A1 Silent p.D366D 0.38 TCGA-5M-AATA-01 1 152785328 152785328 C A LCE1B 3'UTR 0.24 TCGA-5M-AATA-01 1 156912563 156912563 G A ARHGEF11 Missense_Mutation p.A1082V 0.24 deleterious(0) probably_damaging(0.995) TCGA-5M-AATA-01 1 16384740 16384740 C T FAM131C 3'UTR 0.21 TCGA-5M-AATA-01 1 168670364 168670364 T G DPT Splice_Site p.X144_splice 0.33 TCGA-5M-AATA-01 1 207108904 207108904 G A PIGR Silent p.D435D 0.30 TCGA-5M-AATA-01 1 225528356 225528356 T A DNAH14 Missense_Mutation p.L2648H 0.50 deleterious(0) probably_damaging(0.943) TCGA-5M-AATA-01 1 236910982 236910982 C T ACTN2 Silent p.H474H 0.41 TCGA-5M-AATA-01 1 248551273 248551273 C T OR2T6 Missense_Mutation p.R122C 0.19 tolerated(0.05) benign(0.019) TCGA-5M-AATA-01 1 33945280 33945280 C T ZSCAN20 Nonsense_Mutation p.R131* 0.26 TCGA-5M-AATA-01 20 20351019 20351019 G T INSM1 3'UTR 0.04 TCGA-5M-AATA-01 20 49621088 49621088 C T KCNG1 Missense_Mutation p.V344M 0.42 deleterious(0) probably_damaging(0.937) TCGA-5M-AATA-01 20 50342454 50342454 G T ATP9A Missense_Mutation p.F77L 0.13 deleterious(0) possibly_damaging(0.831) TCGA-5M-AATA-01 20 61386165 61386165 C T NTSR1 Silent p.G281G 0.05 TCGA-5M-AATA-01 21 46624592 46624592 G A ADARB1 Missense_Mutation p.R603Q 0.33 deleterious(0) probably_damaging(0.971) TCGA-5M-AATA-01 22 43576773 43576773 T C TTLL12 Missense_Mutation p.N174S 0.25 tolerated(0.26) benign(0.141) TCGA-5M-AATA-01 2 167289052 167289052 T A SCN7A Missense_Mutation p.I790F 0.23 deleterious(0.05) possibly_damaging(0.548) TCGA-5M-AATA-01 2 226446837 226446837 C T NYAP2 Missense_Mutation p.A235V 0.34 tolerated(0.07) benign(0.063) TCGA-5M-AATA-01 2 37473200 37473200 C T NDUFAF7 Silent p.D266D 0.27 TCGA-5M-AATA-01 2 47596530 47596530 C T EPCAM 5'UTR 0.26 TCGA-5M-AATA-01 2 86260847 86260847 G A POLR1A Silent p.N1366N 0.05 TCGA-5M-AATA-01 3 156234115 156234115 G A KCNAB1 Missense_Mutation p.G308R 0.05 tolerated(0.09) benign(0.013) TCGA-5M-AATA-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.30 deleterious(0.02) probably_damaging(0.965) TCGA-5M-AATA-01 3 42703106 42703106 G A ZBTB47 Missense_Mutation p.V535M 0.28 deleterious(0) unknown(0) TCGA-5M-AATA-01 3 77695346 77695346 C T ROBO2 3'UTR 0.24 TCGA-5M-AATA-01 4 123665629 123665629 T A BBS12 3'UTR 0.44 TCGA-5M-AATA-01 4 164393673 164393673 C T TKTL2 Missense_Mutation p.R405Q 0.16 deleterious(0.02) possibly_damaging(0.784) TCGA-5M-AATA-01 4 175598420 175598420 G A GLRA3 Nonsense_Mutation p.R246* 0.15 TCGA-5M-AATA-01 4 17841308 17841308 G T NCAPG Missense_Mutation p.V826L 0.30 deleterious(0.05) benign(0.196) TCGA-5M-AATA-01 5 112128164 112128164 C T APC Nonsense_Mutation p.Q223* 0.21 TCGA-5M-AATA-01 5 139744120 139744120 G A SLC4A9 Missense_Mutation p.G545S 0.22 deleterious(0.04) benign(0.044) TCGA-5M-AATA-01 5 170163004 170163004 T G KCNIP1 3'Flank 0.45 TCGA-5M-AATA-01 5 178199432 178199432 C T AACSP1 Intron 0.50 TCGA-5M-AATA-01 5 64020325 64020333 TTTCTTTTC - SREK1IP1 In_Frame_Del p.E116_K118del 0.27 TCGA-5M-AATA-01 6 110300560 110300560 C T GPR6 Missense_Mutation p.S82L 0.06 tolerated(0.16) probably_damaging(0.945) TCGA-5M-AATA-01 6 147122386 147122386 A C ADGB Silent p.L1535L 0.14 TCGA-5M-AATA-01 6 149285794 149285794 C T UST Intron 0.12 TCGA-5M-AATA-01 6 17629324 17629324 C T NUP153 Missense_Mutation p.A1036T 0.23 tolerated(0.59) benign(0.001) TCGA-5M-AATA-01 6 26199192 26199192 G T HIST1H2AD Missense_Mutation p.L94I 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.904) TCGA-5M-AATA-01 6 31749688 31749688 C T VARS Silent p.A761A 0.16 TCGA-5M-AATA-01 6 39869102 39869102 G A DAAM2 Missense_Mutation p.G946R 0.12 deleterious(0) probably_damaging(1) TCGA-5M-AATA-01 6 41900346 41900346 C T BYSL Missense_Mutation p.R406W 0.05 deleterious(0) probably_damaging(0.986) TCGA-5M-AATA-01 6 56044644 56044644 G A COL21A1 Silent p.L124L 0.04 TCGA-5M-AATA-01 6 70034824 70034824 G A BAI3 Missense_Mutation p.V959I 0.33 deleterious(0.04) probably_damaging(0.992) TCGA-5M-AATA-01 6 88123541 88123541 G A C6ORF165 Missense_Mutation p.R69Q 0.25 deleterious(0.03) benign(0.284) TCGA-5M-AATA-01 7 107834832 107834832 A G NRCAM Missense_Mutation p.Y502H 0.28 deleterious(0) probably_damaging(0.997) TCGA-5M-AATA-01 7 128848673 128848673 C T SMO Silent p.N446N 0.27 TCGA-5M-AATA-01 7 141619040 141619040 G A OR9A4 Missense_Mutation p.R122H 0.29 deleterious(0.03) benign(0.117) TCGA-5M-AATA-01 7 38299633 38299633 C T TRGC1 3'UTR 0.21 TCGA-5M-AATA-01 7 96746894 96746894 T C ACN9 5'UTR 0.17 TCGA-5M-AATA-01 8 102570700 102570700 G A GRHL2 Missense_Mutation p.R113Q 0.14 tolerated(0.17) benign(0.091) TCGA-5M-AATA-01 8 106815689 106815689 C T ZFPM2 Nonsense_Mutation p.Q1127* 0.13 TCGA-5M-AATA-01 8 119936822 119936822 G C TNFRSF11B Missense_Mutation p.R333G 0.18 deleterious(0) probably_damaging(1) TCGA-5M-AATA-01 8 143784453 143784453 G A LY6K Intron 0.11 TCGA-5M-AATA-01 8 23174610 23174610 G A LOXL2 Silent p.H496H 0.39 TCGA-5M-AATA-01 8 42036534 42036534 A G PLAT Missense_Mutation p.Y471H 0.12 deleterious(0.05) probably_damaging(0.996) TCGA-5M-AATA-01 8 64100298 64100298 C T YTHDF3 Missense_Mutation p.R576C 0.13 tolerated(0.05) benign(0) TCGA-5M-AATA-01 8 71056999 71056999 G T NCOA2 Missense_Mutation p.T897N 0.14 tolerated(0.61) benign(0.021) TCGA-5M-AATA-01 8 87486375 87486375 C T RMDN1 3'UTR 0.12 TCGA-5M-AATA-01 8 89180193 89180193 G A MMP16 Silent p.N138N 0.69 TCGA-5M-AATA-01 9 137716529 137716529 C T COL5A1 Silent p.D1594D 0.26 TCGA-5M-AATA-01 9 140948381 140948381 C T CACNA1B Silent p.A1297A 0.24 TCGA-5M-AATA-01 9 34556272 34556272 A G CNTFR Missense_Mutation p.I250T 0.33 deleterious(0.01) possibly_damaging(0.512) TCGA-5M-AATA-01 9 35870278 35870278 C T OR13J1 Missense_Mutation p.G41R 0.33 deleterious(0) probably_damaging(1) TCGA-5M-AATA-01 9 97082718 97082718 C T NUTM2F Silent p.R380R 0.12 TCGA-5M-AATA-01 X 27997790 27997790 G C DCAF8L1 Missense_Mutation p.H554Q 0.60 tolerated(0.11) benign(0.013) TCGA-5M-AATA-01 X 47032525 47032525 A T RBM10 Splice_Site p.X145_splice 0.61 TCGA-5M-AATA-01 X 56590478 56590478 A C UBQLN2 Missense_Mutation p.K58Q 0.62 deleterious(0) probably_damaging(1) TCGA-5M-AATA-01 X 5821582 5821582 G A NLGN4X Silent p.F379F 0.60 TCGA-5M-AATA-01 X 66766356 66766356 T C AR Silent p.G456G 0.05 TCGA-5M-AATE-01 10 108338909 108338909 G A SORCS1 Nonsense_Mutation p.Q1158* 0.42 TCGA-5M-AATE-01 10 97684580 97684580 C T C10orf131 Silent p.S65S 0.43 TCGA-5M-AATE-01 10 98173028 98173028 G A TLL2 Silent p.G323G 0.28 TCGA-5M-AATE-01 11 10555648 10555649 - T RNF141 Frame_Shift_Ins p.V20Sfs*17 0.13 TCGA-5M-AATE-01 11 105795332 105795332 T A GRIA4 Missense_Mutation p.L562I 0.03 deleterious(0.01) probably_damaging(0.993) TCGA-5M-AATE-01 11 108549086 108549086 C T DDX10 Silent p.L194L 0.39 TCGA-5M-AATE-01 11 30033371 30033371 G A KCNA4 Silent p.P285P 0.30 TCGA-5M-AATE-01 11 4661904 4661904 T A OR51D1 Missense_Mutation p.L295Q 0.33 deleterious(0) probably_damaging(0.989) TCGA-5M-AATE-01 11 56058207 56058207 C T OR8H1 Missense_Mutation p.C111Y 0.11 deleterious(0.01) benign(0.021) TCGA-5M-AATE-01 11 5968845 5968845 G T OR56A3 Missense_Mutation p.W90L 0.42 deleterious(0.01) probably_damaging(0.95) TCGA-5M-AATE-01 11 6587885 6587885 G A DNHD1 Missense_Mutation p.E3759K 0.18 possibly_damaging(0.521) TCGA-5M-AATE-01 11 680966 680966 T A DEAF1 Missense_Mutation p.T332S 0.14 tolerated(0.14) benign(0.111) TCGA-5M-AATE-01 11 69972275 69972275 C T ANO1 Silent p.C357C 0.47 TCGA-5M-AATE-01 11 71943963 71943963 C A INPPL1 Silent p.L632L 0.12 TCGA-5M-AATE-01 11 77336829 77336829 C A CLNS1A Missense_Mutation p.E99D 0.37 tolerated(0.43) benign(0.007) TCGA-5M-AATE-01 12 131280571 131280571 C T STX2 3'UTR 0.15 TCGA-5M-AATE-01 12 25267754 25267754 C A CASC1 Nonsense_Mutation p.E483* 0.20 TCGA-5M-AATE-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.50 deleterious(0.04) possibly_damaging(0.506) TCGA-5M-AATE-01 12 31254884 31254884 G C DDX11 Missense_Mutation p.G724R 0.53 deleterious(0) probably_damaging(1) TCGA-5M-AATE-01 12 53005034 53005034 C T KRT73 Missense_Mutation p.R355H 0.12 deleterious(0.01) benign(0.12) TCGA-5M-AATE-01 12 57861833 57861833 G A GLI1 Silent p.S378S 0.56 TCGA-5M-AATE-01 12 97051994 97051994 G A C12orf55 Missense_Mutation p.R1777K 0.24 deleterious(0.04) possibly_damaging(0.831) TCGA-5M-AATE-01 13 99093033 99093033 C T FARP1 Silent p.H913H 0.41 TCGA-5M-AATE-01 14 104642274 104642274 G A KIF26A Missense_Mutation p.R1050Q 0.17 deleterious(0.02) benign(0.166) TCGA-5M-AATE-01 14 106829818 106829818 C T IGHV4-34 Missense_Mutation p.A49T 0.73 tolerated(1) benign(0.003) TCGA-5M-AATE-01 14 20020253 20020253 G T POTEM 5'UTR 0.35 TCGA-5M-AATE-01 14 64494482 64494482 C G SYNE2 Missense_Mutation p.L2229V 0.70 probably_damaging(0.998) TCGA-5M-AATE-01 14 64522696 64522696 G A SYNE2 Missense_Mutation p.R3260H 0.06 benign(0.009) TCGA-5M-AATE-01 14 70712668 70712668 G A ADAM21P1 RNA 0.63 TCGA-5M-AATE-01 15 27017832 27017832 G A GABRB3 Silent p.F56F 0.08 TCGA-5M-AATE-01 15 41228851 41228851 C T DLL4 Missense_Mutation p.R556W 0.09 deleterious(0) probably_damaging(0.968) TCGA-5M-AATE-01 15 49429361 49429362 - T COPS2 Frame_Shift_Ins p.H183Tfs*7 0.11 TCGA-5M-AATE-01 15 79585779 79585779 G A ANKRD34C Silent p.A51A 0.63 TCGA-5M-AATE-01 15 97327391 97327391 C T SPATA8 Missense_Mutation p.S33L 0.55 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-5M-AATE-01 16 11219930 11219930 C T CLEC16A Silent p.Y856Y 0.47 TCGA-5M-AATE-01 16 2159320 2159320 C T PKD1 Missense_Mutation p.V1950M 0.35 probably_damaging(0.928) TCGA-5M-AATE-01 16 30456797 30456797 C A SEPHS2 Silent p.P84P 0.37 TCGA-5M-AATE-01 16 31408715 31408715 C A ITGAD Missense_Mutation p.A58D 0.38 tolerated(0.08) benign(0.002) TCGA-5M-AATE-01 16 56926877 56926877 C T SLC12A3 Missense_Mutation p.A820V 0.42 tolerated(0.36) benign(0.002) TCGA-5M-AATE-01 16 67876997 67876997 C T THAP11 Silent p.P180P 0.32 TCGA-5M-AATE-01 16 72994053 72994053 C T ZFHX3 5'UTR 0.59 TCGA-5M-AATE-01 16 88594583 88594583 G A ZFPM1 Missense_Mutation p.D217N 0.35 deleterious(0) possibly_damaging(0.845) TCGA-5M-AATE-01 16 89704303 89704303 G A DPEP1 Missense_Mutation p.R330K 0.04 tolerated(0.14) benign(0.028) TCGA-5M-AATE-01 17 33772323 33772323 C T SLFN13 Missense_Mutation p.R126H 0.12 tolerated(0.07) benign(0.032) TCGA-5M-AATE-01 17 38911258 38911258 C T KRT25 Missense_Mutation p.R89H 0.31 deleterious(0.01) probably_damaging(1) TCGA-5M-AATE-01 17 38975327 38975327 T G KRT10 Missense_Mutation p.H487P 0.31 tolerated_low_confidence(0.33) unknown(0) TCGA-5M-AATE-01 17 4795999 4795999 C T MINK1 Silent p.S749S 0.64 TCGA-5M-AATE-01 17 70117650 70117650 G C SOX9 Missense_Mutation p.G40R 0.03 deleterious(0) probably_damaging(0.984) TCGA-5M-AATE-01 17 7578551 7578551 A T TP53 Missense_Mutation p.S127T 0.72 deleterious(0) probably_damaging(0.999) TCGA-5M-AATE-01 18 48252490 48252490 G A MAPK4 Missense_Mutation p.V338M 0.27 deleterious(0) benign(0.123) TCGA-5M-AATE-01 19 12542367 12542367 A G ZNF443 Missense_Mutation p.F207L 0.51 tolerated(0.65) benign(0.309) TCGA-5M-AATE-01 19 15302390 15302390 G A NOTCH3 Missense_Mutation p.T294M 0.43 tolerated(0.06) possibly_damaging(0.893) TCGA-5M-AATE-01 19 38684212 38684212 G A SIPA1L3 Silent p.S1544S 0.54 TCGA-5M-AATE-01 19 39013703 39013703 A C RYR1 Missense_Mutation p.E3432A 0.35 benign(0) TCGA-5M-AATE-01 19 40382684 40382684 G A FCGBP Missense_Mutation p.P3401L 0.38 probably_damaging(0.913) TCGA-5M-AATE-01 19 44223634 44223634 C T IRGC Silent p.D308D 0.55 TCGA-5M-AATE-01 19 47823752 47823752 A G C5AR1 Missense_Mutation p.T240A 0.44 tolerated(0.28) probably_damaging(0.999) TCGA-5M-AATE-01 19 50391082 50391082 G A TBC1D17 Silent p.E550E 0.42 TCGA-5M-AATE-01 19 53571463 53571463 C T ZNF160 Missense_Mutation p.S775N 0.49 tolerated(0.58) possibly_damaging(0.517) TCGA-5M-AATE-01 19 57327776 57327776 A C PEG3 Silent p.T678T 0.06 TCGA-5M-AATE-01 19 58118415 58118415 C A ZNF530 Silent p.R508R 0.11 TCGA-5M-AATE-01 19 6669983 6669983 C T TNFSF14 Missense_Mutation p.C33Y 0.43 deleterious(0.03) probably_damaging(0.98) TCGA-5M-AATE-01 19 756941 756941 G A MISP 5'UTR 0.10 TCGA-5M-AATE-01 1 145298346 145298346 A C NBPF10 Missense_Mutation p.D253A 0.28 benign(0.372) TCGA-5M-AATE-01 1 147091229 147091229 G A BCL9 Missense_Mutation p.R423Q 0.04 tolerated(0.55) benign(0.223) TCGA-5M-AATE-01 1 157667068 157667068 C T FCRL3 Missense_Mutation p.G236R 0.72 tolerated(0.08) possibly_damaging(0.615) TCGA-5M-AATE-01 1 159170783 159170783 T G CADM3 3'UTR 0.07 TCGA-5M-AATE-01 1 174668739 174668739 A G RABGAP1L Missense_Mutation p.N659S 0.66 tolerated(0.11) benign(0.005) TCGA-5M-AATE-01 1 179564942 179564942 A C TDRD5 Missense_Mutation p.K274Q 0.14 deleterious(0.03) probably_damaging(0.92) TCGA-5M-AATE-01 1 20519340 20519340 G A UBXN10 3'UTR 0.34 TCGA-5M-AATE-01 1 248264115 248264115 G A OR2L13 3'UTR 0.12 TCGA-5M-AATE-01 1 26316072 26316072 G C PAFAH2 Missense_Mutation p.F37L 0.07 deleterious(0) possibly_damaging(0.897) TCGA-5M-AATE-01 1 32196484 32196484 G A BAI2 Missense_Mutation p.R1433C 0.42 deleterious(0.04) possibly_damaging(0.719) TCGA-5M-AATE-01 1 36754785 36754785 A C THRAP3 Missense_Mutation p.K389Q 0.31 deleterious(0.03) probably_damaging(0.978) TCGA-5M-AATE-01 1 40236016 40236016 T C OXCT2 Silent p.R304R 0.26 TCGA-5M-AATE-01 1 4772184 4772184 G A AJAP1 Missense_Mutation p.R85Q 0.46 tolerated(0.23) benign(0.202) TCGA-5M-AATE-01 1 70257794 70257794 C A LRRC7 Silent p.T86T 0.39 TCGA-5M-AATE-01 1 74540391 74540391 T G LRRIQ3 Missense_Mutation p.K317N 0.13 deleterious(0.01) possibly_damaging(0.541) TCGA-5M-AATE-01 20 1162007 1162007 T C TMEM74B Missense_Mutation p.S86G 0.69 deleterious(0.05) benign(0.346) TCGA-5M-AATE-01 20 15918143 15918143 G A MACROD2 Silent p.V287V 0.69 TCGA-5M-AATE-01 20 3145689 3145689 C T LZTS3 Missense_Mutation p.R478Q 0.13 deleterious(0.01) probably_damaging(0.915) TCGA-5M-AATE-01 20 40126199 40126199 T C CHD6 Intron 0.10 TCGA-5M-AATE-01 20 43933094 43933094 C T MATN4 Silent p.P139P 0.07 TCGA-5M-AATE-01 20 44141362 44141362 C T SPINT3 Missense_Mutation p.G67R 0.66 deleterious(0) probably_damaging(0.995) TCGA-5M-AATE-01 20 44441958 44441958 T C UBE2C Intron 0.69 TCGA-5M-AATE-01 20 62421685 62421685 C T ZBTB46 Silent p.A142A 0.28 TCGA-5M-AATE-01 21 33076217 33076217 G A SCAF4 Missense_Mutation p.P61L 0.73 probably_damaging(0.998) TCGA-5M-AATE-01 21 45565588 45565588 G A C21orf33 3'UTR 0.79 TCGA-5M-AATE-01 21 47412121 47412121 C T COL6A1 Missense_Mutation p.A409V 0.25 tolerated(0.26) unknown(0) TCGA-5M-AATE-01 22 22328814 22328814 G A TOP3B Silent p.H39H 0.07 TCGA-5M-AATE-01 22 26040600 26040600 G A ADRBK2 Missense_Mutation p.E78K 0.10 tolerated(0.09) benign(0.143) TCGA-5M-AATE-01 22 39388511 39388511 C A APOBEC3B 3'UTR 0.17 TCGA-5M-AATE-01 22 43658797 43658797 G A SCUBE1 Missense_Mutation p.T180M 0.57 deleterious(0.04) possibly_damaging(0.721) TCGA-5M-AATE-01 2 105859807 105859807 G A GPR45 3'UTR 0.42 TCGA-5M-AATE-01 2 135922237 135922237 A T RAB3GAP1 Missense_Mutation p.I894F 0.13 deleterious(0) benign(0.175) TCGA-5M-AATE-01 2 179393524 179393524 G A TTN Nonsense_Mutation p.R35652* 0.50 TCGA-5M-AATE-01 2 179666877 179666877 G A TTN Missense_Mutation p.L95F 0.09 TCGA-5M-AATE-01 2 209315512 209315512 C T PTH2R Nonsense_Mutation p.R298* 0.34 TCGA-5M-AATE-01 2 220413895 220413895 G A TMEM198 Missense_Mutation p.R255Q 0.46 deleterious(0.01) benign(0.238) TCGA-5M-AATE-01 2 228883753 228883753 G A SPHKAP Missense_Mutation p.A606V 0.05 tolerated(0.18) benign(0.016) TCGA-5M-AATE-01 2 233349187 233349187 G A ECEL1 Silent p.P393P 0.36 TCGA-5M-AATE-01 2 237405936 237405936 C T IQCA1 Missense_Mutation p.R69Q 0.55 tolerated(0.06) possibly_damaging(0.857) TCGA-5M-AATE-01 2 241066001 241066001 C T MYEOV2 Silent p.Q246Q 0.11 TCGA-5M-AATE-01 2 54853363 54853363 G T SPTBN1 Nonsense_Mutation p.E546* 0.31 TCGA-5M-AATE-01 2 71886126 71886126 G A DYSF Missense_Mutation p.R1625Q 0.30 tolerated(0.17) benign(0.028) TCGA-5M-AATE-01 2 74642572 74642572 G A C2orf81 Silent p.D217D 0.52 TCGA-5M-AATE-01 2 97356301 97356301 G A FER1L5 RNA 0.44 TCGA-5M-AATE-01 3 119210377 119210377 A G POGLUT1 Silent p.Q326Q 0.09 TCGA-5M-AATE-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.45 deleterious(0.02) probably_damaging(0.959) TCGA-5M-AATE-01 3 195452986 195452986 C T MUC20 Silent p.S504S 0.19 TCGA-5M-AATE-01 3 45588966 45588968 AAG - LARS2 In_Frame_Del p.K887del 0.16 TCGA-5M-AATE-01 3 47963306 47963306 C A MAP4 Missense_Mutation p.A160S 0.48 tolerated(0.13) benign(0.002) TCGA-5M-AATE-01 3 52729962 52729962 G A GLT8D1 Silent p.I209I 0.05 TCGA-5M-AATE-01 3 52821961 52821961 C G ITIH1 Intron 0.52 TCGA-5M-AATE-01 4 114257195 114257195 G C ANK2 Silent p.R1191R 0.34 TCGA-5M-AATE-01 4 147561601 147561601 G A POU4F2 Missense_Mutation p.V291M 0.33 deleterious(0) probably_damaging(0.993) TCGA-5M-AATE-01 4 175897983 175897983 C A ADAM29 Missense_Mutation p.T436N 0.39 tolerated(0.5) benign(0.036) TCGA-5M-AATE-01 4 187539997 187539997 G A FAT1 Silent p.T2581T 0.32 TCGA-5M-AATE-01 4 39088271 39088271 G A KLHL5 Missense_Mutation p.R392H 0.42 tolerated(0.09) possibly_damaging(0.905) TCGA-5M-AATE-01 4 70078422 70078422 A T UGT2B11 Missense_Mutation p.F247I 0.42 tolerated(0.09) benign(0.061) TCGA-5M-AATE-01 4 70460396 70460396 G A UGT2A1 Missense_Mutation p.A534V 0.05 tolerated(0.05) benign(0.323) TCGA-5M-AATE-01 5 112175324 112175324 G T APC Nonsense_Mutation p.E1345* 0.81 TCGA-5M-AATE-01 5 139909363 139909363 G A ANKHD1 Missense_Mutation p.V2278I 0.06 benign(0.209) TCGA-5M-AATE-01 5 140306725 140306725 G A PCDHAC1 Missense_Mutation p.R83H 0.37 deleterious(0) probably_damaging(1) TCGA-5M-AATE-01 5 140616464 140616464 G A PCDHB18 RNA 0.45 TCGA-5M-AATE-01 5 140789095 140789095 C T PCDHGB6 Silent p.V442V 0.26 TCGA-5M-AATE-01 5 140811853 140811853 C T PCDHGA12 Silent p.S509S 0.10 TCGA-5M-AATE-01 5 150518970 150518970 G A ANXA6 Missense_Mutation p.R50W 0.26 deleterious(0) probably_damaging(0.999) TCGA-5M-AATE-01 5 154396784 154396784 G A KIF4B Missense_Mutation p.R1122H 0.80 deleterious(0.01) benign(0.049) TCGA-5M-AATE-01 5 15500724 15500724 G A FBXL7 5'UTR 0.18 TCGA-5M-AATE-01 5 180166778 180166778 C T OR2Y1 Missense_Mutation p.R94H 0.42 deleterious(0.01) benign(0.001) TCGA-5M-AATE-01 5 3601318 3601318 G A IRX1 3'UTR 0.46 TCGA-5M-AATE-01 5 66462321 66462321 A G MAST4 Silent p.K2438K 0.47 TCGA-5M-AATE-01 5 72850765 72850765 G A ANKRA2 Missense_Mutation p.S220L 0.20 tolerated(1) probably_damaging(0.999) TCGA-5M-AATE-01 6 110620206 110620206 G A METTL24 Silent p.P235P 0.59 TCGA-5M-AATE-01 6 123869615 123869615 G A TRDN Silent p.D125D 0.36 TCGA-5M-AATE-01 6 129468174 129468174 C G LAMA2 Missense_Mutation p.P297R 0.50 deleterious(0) probably_damaging(0.988) TCGA-5M-AATE-01 6 157099872 157099874 CCG - ARID1B In_Frame_Del p.A274del 0.08 TCGA-5M-AATE-01 6 159457603 159457603 G T TAGAP Missense_Mutation p.F484L 0.15 tolerated(0.06) benign(0.037) TCGA-5M-AATE-01 6 28251580 28251580 C G PGBD1 5'UTR 0.43 TCGA-5M-AATE-01 6 28541340 28541340 G A SCAND3 Missense_Mutation p.L776F 0.51 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-5M-AATE-01 6 30231085 30231085 G A HCG17 Intron 0.51 TCGA-5M-AATE-01 6 3154761 3154761 A G TUBB2A Missense_Mutation p.L225P 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-5M-AATE-01 6 32053729 32053729 G A TNXB Silent p.T982T 0.46 TCGA-5M-AATE-01 6 38084509 38084509 C A ZFAND3 Missense_Mutation p.R175S 0.50 deleterious(0) probably_damaging(0.998) TCGA-5M-AATE-01 6 66204738 66204738 C T EYS Missense_Mutation p.C189Y 0.08 deleterious(0) probably_damaging(0.965) TCGA-5M-AATE-01 6 73751665 73751665 G A KCNQ5 Missense_Mutation p.V166M 0.22 deleterious(0) probably_damaging(0.995) TCGA-5M-AATE-01 7 102854482 102854482 G C DPY19L2P2 RNA 0.05 TCGA-5M-AATE-01 7 119914770 119914770 G A KCND2 Silent p.P28P 0.14 TCGA-5M-AATE-01 7 120595620 120595620 A G ING3 Missense_Mutation p.Y70C 0.70 deleterious(0.01) possibly_damaging(0.853) TCGA-5M-AATE-01 7 121638027 121638027 C G PTPRZ1 Missense_Mutation p.Q403E 0.05 deleterious(0) probably_damaging(0.977) TCGA-5M-AATE-01 7 140373552 140373552 C T ADCK2 Missense_Mutation p.S141L 0.19 deleterious(0) possibly_damaging(0.839) TCGA-5M-AATE-01 7 142481848 142481848 C A PRSS3P2 RNA 0.74 TCGA-5M-AATE-01 7 157178556 157178556 T C DNAJB6 Intron 0.33 TCGA-5M-AATE-01 7 21583057 21583057 G A DNAH11 Missense_Mutation p.R65H 0.22 benign(0.01) TCGA-5M-AATE-01 7 2302954 2302954 G C SNX8 Missense_Mutation p.L276V 0.12 tolerated(0.56) benign(0.005) TCGA-5M-AATE-01 7 35922187 35922187 G C SEPT7 Splice_Site p.X242_splice 0.05 TCGA-5M-AATE-01 7 4051785 4051785 C T SDK1 Missense_Mutation p.R780W 0.14 deleterious(0) probably_damaging(1) TCGA-5M-AATE-01 7 53103906 53103906 C T POM121L12 Missense_Mutation p.A181V 0.16 deleterious(0.04) possibly_damaging(0.565) TCGA-5M-AATE-01 7 82583871 82583871 G T PCLO Missense_Mutation p.T2133N 0.72 unknown(0) TCGA-5M-AATE-01 7 93108738 93108738 G A CALCR Nonsense_Mutation p.R63* 0.74 TCGA-5M-AATE-01 8 116599377 116599377 G A TRPS1 Silent p.L851L 0.19 TCGA-5M-AATE-01 8 132002665 132002665 G A ADCY8 Missense_Mutation p.R362C 0.35 deleterious(0) possibly_damaging(0.759) TCGA-5M-AATE-01 8 14095128 14095128 C T SGCZ Missense_Mutation p.G133R 0.53 deleterious(0) probably_damaging(0.922) TCGA-5M-AATE-01 8 141840618 141840618 C T PTK2 Missense_Mutation p.V201I 0.50 tolerated(0.41) possibly_damaging(0.493) TCGA-5M-AATE-01 8 143781860 143781860 G A LY6K 5'UTR 0.38 TCGA-5M-AATE-01 8 17230645 17230645 G A MTMR7 Silent p.D43D 0.55 TCGA-5M-AATE-01 8 28413478 28413478 C T FZD3 Missense_Mutation p.R593C 0.49 deleterious(0) probably_damaging(0.996) TCGA-5M-AATE-01 8 37821698 37821698 T C ADRB3 3'UTR 0.50 TCGA-5M-AATE-01 8 59512336 59512336 C T NSMAF Missense_Mutation p.D507N 0.18 tolerated(0.11) benign(0.078) TCGA-5M-AATE-01 8 91836998 91836998 C G NECAB1 Missense_Mutation p.L60V 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-5M-AATE-01 9 117849414 117849414 C T TNC Missense_Mutation p.R199Q 0.36 tolerated(1) benign(0.001) TCGA-5M-AATE-01 9 127262988 127262988 C T NR5A1 Missense_Mutation p.R84H 0.47 deleterious(0) probably_damaging(0.959) TCGA-5M-AATE-01 9 128067349 128067349 G A GAPVD1 Missense_Mutation p.R346H 0.52 deleterious(0) possibly_damaging(0.686) TCGA-5M-AATE-01 9 131254995 131254995 T C ODF2 Silent p.L555L 0.07 TCGA-5M-AATE-01 9 136536751 136536751 G A SARDH Silent p.C744C 0.30 TCGA-5M-AATE-01 9 16437233 16437233 G A BNC2 Missense_Mutation p.A320V 0.32 deleterious(0) probably_damaging(0.92) TCGA-5M-AATE-01 9 43861100 43861100 G A CNTNAP3B Silent p.A658A 0.21 TCGA-5M-AATE-01 9 77257530 77257530 G A RORB Missense_Mutation p.V146I 0.43 tolerated(0.43) benign(0.001) TCGA-5M-AATE-01 9 87338528 87338528 G A NTRK2 Silent p.V208V 0.43 TCGA-5M-AATE-01 X 103268072 103268072 G A H2BFWT Missense_Mutation p.T54M 0.91 tolerated(0.15) benign(0.006) TCGA-5M-AATE-01 X 108926596 108926596 G A ACSL4 Silent p.N40N 0.91 TCGA-5M-AATE-01 X 114141749 114141749 T G HTR2C Missense_Mutation p.L383W 0.89 deleterious(0) probably_damaging(0.995) TCGA-5M-AATE-01 X 128895198 128895198 A G XPNPEP2 Missense_Mutation p.N517D 0.05 tolerated(0.7) benign(0.035) TCGA-5M-AATE-01 X 23928458 23928458 G A CXorf58 Silent p.L13L 0.86 TCGA-5M-AATE-01 X 70147194 70147194 G T SLC7A3 Missense_Mutation p.D408E 0.04 tolerated(0.11) benign(0.344) TCGA-5M-AATE-01 X 78217398 78217398 G A P2RY10 3'UTR 0.86 TCGA-5M-AATE-01 Y 15016739 15016739 A G DDX3Y 5'Flank 0.86 TCGA-A6-2671-01 10 5998357 5998357 C T IL15RA Missense_Mutation p.C226Y 0.22 tolerated(0.62) benign(0.009) TCGA-A6-2671-01 11 124794736 124794736 G A HEPACAM Silent p.G105G 0.59 TCGA-A6-2671-01 11 27362984 27362984 T C CCDC34 Silent p.L240L 0.63 TCGA-A6-2671-01 11 6231624 6231624 G A C11orf42 Missense_Mutation p.G206D 0.12 deleterious(0) probably_damaging(1) TCGA-A6-2671-01 11 6239972 6239972 G A FAM160A2 Silent p.H431H 0.61 TCGA-A6-2671-01 11 6653961 6653961 G T DCHS1 Silent p.R928R 0.11 TCGA-A6-2671-01 11 66617476 66617476 C T PC Missense_Mutation p.V944M 0.76 deleterious(0) probably_damaging(0.951) TCGA-A6-2671-01 11 92531027 92531027 C A FAT3 Silent p.I1616I 0.33 TCGA-A6-2671-01 12 126137114 126137114 G A TMEM132B Missense_Mutation p.R676Q 0.78 deleterious(0.03) benign(0.312) TCGA-A6-2671-01 12 80328506 80328506 G A PPP1R12A Missense_Mutation p.A69V 0.25 tolerated(0.29) probably_damaging(0.979) TCGA-A6-2671-01 13 20716348 20716348 C T GJA3 Silent p.P360P 0.12 TCGA-A6-2671-01 14 50074349 50074349 C T LRR1 Missense_Mutation p.R172C 0.19 deleterious(0) probably_damaging(1) TCGA-A6-2671-01 15 23444011 23444011 C T AC100757.1 5'Flank 0.15 TCGA-A6-2671-01 15 26806081 26806081 G A GABRB3 Missense_Mutation p.R360W 0.07 deleterious(0) probably_damaging(0.968) TCGA-A6-2671-01 15 99671580 99671580 C G SYNM Silent p.V1004V 0.45 TCGA-A6-2671-01 16 1270141 1270141 G A CACNA1H Missense_Mutation p.R2070H 0.44 tolerated(0.19) possibly_damaging(0.891) TCGA-A6-2671-01 16 21991932 21991932 G A UQCRC2 Missense_Mutation p.G397R 0.34 deleterious(0.05) possibly_damaging(0.75) TCGA-A6-2671-01 16 2983365 2983367 AGG - FLYWCH1 In_Frame_Del p.E344del 0.73 TCGA-A6-2671-01 16 3079357 3079357 G C CCDC64B Missense_Mutation p.P344R 0.58 tolerated(0.16) probably_damaging(0.996) TCGA-A6-2671-01 17 27402086 27402086 T C TIAF1 5'UTR 0.28 TCGA-A6-2671-01 17 39538253 39538253 C T KRT34 Silent p.A124A 0.42 TCGA-A6-2671-01 17 42853561 42853561 G C ADAM11 Missense_Mutation p.G518R 0.19 deleterious(0) probably_damaging(0.992) TCGA-A6-2671-01 17 4714200 4714200 C A PLD2 Silent p.R322R 0.27 TCGA-A6-2671-01 17 48538074 48538074 C T ACSF2 Silent p.I55I 0.37 TCGA-A6-2671-01 17 56435252 56435252 C - RNF43 Frame_Shift_Del p.A629Pfs*71 0.47 TCGA-A6-2671-01 17 61995180 61995180 A C GH1 Silent p.S132S 0.65 TCGA-A6-2671-01 17 7578411 7578412 CA - TP53 Frame_Shift_Del p.V173Efs*7 0.23 TCGA-A6-2671-01 17 7721317 7721317 C T DNAH2 Silent p.H3430H 0.30 TCGA-A6-2671-01 18 21494785 21494787 TGT - LAMA3 In_Frame_Del p.V2537del 0.56 TCGA-A6-2671-01 19 10570108 10570108 C A PDE4A Missense_Mutation p.N378K 0.42 deleterious(0) probably_damaging(0.962) TCGA-A6-2671-01 19 35622734 35622734 G T LGI4 Silent p.L139L 0.32 TCGA-A6-2671-01 19 40398082 40398082 G A FCGBP Silent p.D2295D 0.41 TCGA-A6-2671-01 1 11710595 11710595 G C FBXO2 Missense_Mutation p.R107G 0.17 tolerated(0.36) benign(0.139) TCGA-A6-2671-01 1 1341125 1341125 C T MRPL20 Intron 0.22 TCGA-A6-2671-01 1 149901635 149901635 C G MTMR11 Missense_Mutation p.W607C 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-A6-2671-01 1 152188023 152188023 T C HRNR Missense_Mutation p.S2028G 0.11 unknown(0) TCGA-A6-2671-01 1 157737148 157737148 C T FCRL2 Silent p.S345S 0.41 TCGA-A6-2671-01 1 17313400 17313400 G A ATP13A2 Silent p.Y1045Y 0.19 TCGA-A6-2671-01 1 176526374 176526374 G A PAPPA2 Missense_Mutation p.A306T 0.39 tolerated(0.13) benign(0.025) TCGA-A6-2671-01 1 197447005 197447005 T C CRB1 Missense_Mutation p.I1406T 0.39 deleterious(0) benign(0.07) TCGA-A6-2671-01 1 248801862 248801862 C G OR2T35 Missense_Mutation p.G233A 0.38 tolerated(0.2) benign(0.202) TCGA-A6-2671-01 1 2938454 2938454 C A ACTRT2 Silent p.A68A 0.37 TCGA-A6-2671-01 20 44638688 44638688 C G MMP9 Missense_Mutation p.Q108E 0.33 tolerated(0.25) benign(0.012) TCGA-A6-2671-01 20 57767474 57767474 C T ZNF831 Missense_Mutation p.P467L 0.47 tolerated(0.95) benign(0) TCGA-A6-2671-01 20 57767712 57767712 G A ZNF831 Silent p.S546S 0.62 TCGA-A6-2671-01 21 41684282 41684282 C T DSCAM Silent p.P596P 0.65 TCGA-A6-2671-01 21 43708004 43708004 G A ABCG1 Missense_Mutation p.E327K 0.28 deleterious(0) benign(0.234) TCGA-A6-2671-01 21 43897435 43897435 C T RSPH1 Silent p.T231T 0.56 TCGA-A6-2671-01 22 16287489 16287489 T - POTEH Frame_Shift_Del p.S133Afs*71 0.25 TCGA-A6-2671-01 22 31534726 31534726 A G PLA2G3 Missense_Mutation p.S192P 0.36 deleterious(0.01) possibly_damaging(0.588) TCGA-A6-2671-01 2 131520451 131520451 C T AMER3 Missense_Mutation p.P269L 0.41 tolerated(0.33) benign(0.002) TCGA-A6-2671-01 2 131521926 131521926 G A AMER3 Missense_Mutation p.G761R 0.35 tolerated(1) benign(0.002) TCGA-A6-2671-01 2 165997462 165997462 C T SCN3A Missense_Mutation p.S573N 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-A6-2671-01 2 166901556 166901556 G T SCN1A Missense_Mutation p.H553Q 0.42 tolerated(0.13) benign(0.274) TCGA-A6-2671-01 2 167084214 167084214 G A SCN9A Missense_Mutation p.T1398M 0.40 tolerated(1) benign(0) TCGA-A6-2671-01 2 179611406 179611406 C A TTN Intron 0.37 TCGA-A6-2671-01 2 210517908 210517908 G A MAP2 Missense_Mutation p.R5Q 0.36 deleterious_low_confidence(0.01) benign(0.133) TCGA-A6-2671-01 2 216298127 216298130 TAAG - FN1 Frame_Shift_Del p.T111Mfs*8 0.53 TCGA-A6-2671-01 2 28464192 28464192 G T BRE Silent p.V261V 0.28 TCGA-A6-2671-01 2 69093660 69093660 G A BMP10 Silent p.Y126Y 0.46 TCGA-A6-2671-01 2 80874952 80874952 G A CTNNA2 Silent p.S891S 0.35 TCGA-A6-2671-01 3 124716615 124716615 G T HEG1 Silent p.I1190I 0.27 TCGA-A6-2671-01 3 142753779 142753779 C T U2SURP Missense_Mutation p.R635C 0.42 deleterious(0.02) benign(0.04) TCGA-A6-2671-01 3 147128226 147128226 C T ZIC1 Silent p.D109D 0.22 TCGA-A6-2671-01 3 14813626 14813626 G A C3orf20 Missense_Mutation p.E850K 0.14 tolerated(0.87) benign(0.01) TCGA-A6-2671-01 3 193272662 193272662 C A ATP13A4 5'UTR 0.50 TCGA-A6-2671-01 3 30045476 30045476 T G RBMS3 3'UTR 0.42 TCGA-A6-2671-01 3 52678790 52678790 T A PBRM1 Nonsense_Mutation p.K277* 0.44 TCGA-A6-2671-01 4 151356751 151356751 G C LRBA Missense_Mutation p.S2355C 0.33 deleterious(0) probably_damaging(0.998) TCGA-A6-2671-01 4 15691615 15691616 - A FAM200B 3'Flank 0.35 TCGA-A6-2671-01 4 187554859 187554859 T C FAT1 Silent p.G1434G 0.35 TCGA-A6-2671-01 5 112174117 112174117 T - APC Frame_Shift_Del p.S943Qfs*12 0.18 TCGA-A6-2671-01 5 112175593 112175614 CAGAAGTAAAACACCTCCACCA - APC Frame_Shift_Del p.R1435Lfs*31 0.47 TCGA-A6-2671-01 5 139193853 139193853 G T PSD2 Missense_Mutation p.C307F 0.37 tolerated(0.11) probably_damaging(0.949) TCGA-A6-2671-01 5 140480500 140480500 A G PCDHB3 Silent p.K89K 0.45 TCGA-A6-2671-01 5 140503702 140503702 G A PCDHB4 Missense_Mutation p.V708M 0.27 deleterious_low_confidence(0) benign(0.271) TCGA-A6-2671-01 5 140682560 140682560 C T SLC25A2 Silent p.R291R 0.24 TCGA-A6-2671-01 5 140762917 140762917 C T PCDHGA7 Missense_Mutation p.R151W 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-2671-01 5 143588 143588 G A PLEKHG4B Missense_Mutation p.R238H 0.18 tolerated(0.09) possibly_damaging(0.568) TCGA-A6-2671-01 5 154396044 154396044 C A KIF4B Silent p.V875V 0.31 TCGA-A6-2671-01 5 7727285 7727285 C A ADCY2 Silent p.A594A 0.27 TCGA-A6-2671-01 6 102247632 102247632 G A GRIK2 Missense_Mutation p.R354H 0.49 tolerated(0.12) probably_damaging(0.916) TCGA-A6-2671-01 6 110620308 110620308 G A METTL24 Silent p.N201N 0.46 TCGA-A6-2671-01 6 152697522 152697522 T G SYNE1 Missense_Mutation p.K3106N 0.14 possibly_damaging(0.735) TCGA-A6-2671-01 6 38805763 38805763 G A DNAH8 Missense_Mutation p.G1254S 0.24 probably_damaging(0.94) TCGA-A6-2671-01 6 75893123 75893123 A C COL12A1 Missense_Mutation p.Y512D 0.21 probably_damaging(0.998) TCGA-A6-2671-01 6 90661505 90661505 C T BACH2 Missense_Mutation p.R107H 0.25 tolerated(0.32) benign(0.045) TCGA-A6-2671-01 7 132192530 132192530 C T PLXNA4 Missense_Mutation p.R308H 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-A6-2671-01 7 151845958 151845959 - T KMT2C Frame_Shift_Ins p.W4352Mfs*17 0.41 TCGA-A6-2671-01 7 16348216 16348216 A G ISPD Silent p.L241L 0.46 TCGA-A6-2671-01 7 18767220 18767220 G A HDAC9 Silent p.T583T 0.43 TCGA-A6-2671-01 7 19156593 19156593 G A TWIST1 Missense_Mutation p.R118C 0.46 deleterious(0) probably_damaging(1) TCGA-A6-2671-01 7 97875262 97875262 C T TECPR1 Missense_Mutation p.R66H 0.39 deleterious(0) probably_damaging(0.933) TCGA-A6-2671-01 8 104413829 104413829 A T SLC25A32 Missense_Mutation p.Y243N 0.07 deleterious(0) probably_damaging(1) TCGA-A6-2671-01 8 134474124 134474124 G A ST3GAL1 Silent p.C281C 0.88 TCGA-A6-2671-01 8 143928005 143928005 G T GML Nonsense_Mutation p.E126* 0.11 TCGA-A6-2671-01 8 39114860 39114860 C T ADAM32 Silent p.S720S 0.16 TCGA-A6-2671-01 8 67485723 67485723 C A MYBL1 Missense_Mutation p.G497C 0.23 deleterious(0) probably_damaging(0.954) TCGA-A6-2671-01 8 87755808 87755808 C T CNGB3 Silent p.E16E 0.16 TCGA-A6-2671-01 9 139902869 139902869 C A ABCA2 Missense_Mutation p.R2425L 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-A6-2671-01 9 21305104 21305104 G A IFNA5 Missense_Mutation p.S51F 0.21 tolerated(0.63) benign(0.306) TCGA-A6-2671-01 X 138642945 138642945 G A F9 Missense_Mutation p.V257I 0.84 tolerated(0.89) benign(0.005) TCGA-A6-2671-01 X 16870194 16870194 G T RBBP7 Missense_Mutation p.R383S 0.74 deleterious(0) possibly_damaging(0.522) TCGA-A6-2671-01 X 51150986 51150986 G C CXorf67 Missense_Mutation p.G373A 0.38 deleterious(0.02) probably_damaging(0.982) TCGA-A6-2674-01 10 24908826 24908826 C A ARHGAP21 Missense_Mutation p.W666C 0.06 deleterious(0.02) benign(0.005) TCGA-A6-2674-01 10 75479054 75479054 C T RP11-574K11.28 RNA 0.33 TCGA-A6-2674-01 11 49229918 49229918 G A FOLH1 Missense_Mutation p.A15V 0.09 tolerated_low_confidence(0.33) benign(0.001) TCGA-A6-2674-01 11 5274565 5274565 G T HBG2 Missense_Mutation p.A129D 0.12 deleterious(0) possibly_damaging(0.736) TCGA-A6-2674-01 11 59382807 59382807 C T OSBP Missense_Mutation p.V111M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-A6-2674-01 11 64525930 64525930 C T PYGM Missense_Mutation p.G135R 0.18 deleterious(0) possibly_damaging(0.609) TCGA-A6-2674-01 11 66063003 66063003 G A TMEM151A Missense_Mutation p.R429H 0.23 tolerated(0.06) benign(0.381) TCGA-A6-2674-01 11 71212393 71212393 G A NADSYN1 Missense_Mutation p.D706N 0.15 tolerated_low_confidence(0.05) benign(0.265) TCGA-A6-2674-01 11 72422487 72422487 A C ARAP1 Missense_Mutation p.F360L 0.08 deleterious(0) probably_damaging(0.996) TCGA-A6-2674-01 11 74987934 74987934 C A ARRB1 Missense_Mutation p.C242F 0.11 deleterious(0) probably_damaging(0.997) TCGA-A6-2674-01 11 82693098 82693098 G C RAB30 3'UTR 0.29 TCGA-A6-2674-01 11 83874551 83874551 T C DLG2 Missense_Mutation p.N193D 0.08 deleterious(0.04) probably_damaging(0.99) TCGA-A6-2674-01 11 94732013 94732013 G C KDM4D Missense_Mutation p.E493Q 0.10 tolerated_low_confidence(0.43) benign(0.135) TCGA-A6-2674-01 12 103271305 103271305 G C PAH Missense_Mutation p.Q126E 0.20 tolerated(0.09) benign(0.019) TCGA-A6-2674-01 12 111731283 111731283 C T CUX2 Missense_Mutation p.T157M 0.10 tolerated(0.13) possibly_damaging(0.678) TCGA-A6-2674-01 12 122757493 122757493 G A CLIP1 Missense_Mutation p.R1416C 0.08 deleterious(0) probably_damaging(0.994) TCGA-A6-2674-01 12 124821307 124821307 C T NCOR2 Missense_Mutation p.R2036H 0.05 probably_damaging(0.999) TCGA-A6-2674-01 12 133372754 133372754 T C GOLGA3 Missense_Mutation p.E718G 0.14 tolerated(0.06) benign(0.301) TCGA-A6-2674-01 12 14923903 14923904 - CGAGA HIST4H4 Frame_Shift_Ins p.A39Vfs*30 0.20 TCGA-A6-2674-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.20 deleterious(0) benign(0.361) TCGA-A6-2674-01 12 40939780 40939780 T G MUC19 3'UTR 0.08 TCGA-A6-2674-01 12 55641178 55641178 G T OR6C74 Missense_Mutation p.S36I 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-A6-2674-01 12 63954355 63954355 G A DPY19L2 Silent p.D738D 0.09 TCGA-A6-2674-01 12 70049532 70049532 G A BEST3 Missense_Mutation p.R388W 0.21 deleterious(0) possibly_damaging(0.696) TCGA-A6-2674-01 12 88582688 88582688 G A TMTC3 Missense_Mutation p.E501K 0.09 tolerated(0.47) benign(0.005) TCGA-A6-2674-01 13 108518792 108518792 C A FAM155A Silent p.L51L 0.30 TCGA-A6-2674-01 13 112722294 112722294 C T SOX1 Missense_Mutation p.R108C 0.16 deleterious(0) probably_damaging(0.993) TCGA-A6-2674-01 13 114504718 114504718 T C TMEM255B Missense_Mutation p.V201A 0.32 tolerated(0.15) benign(0.036) TCGA-A6-2674-01 13 24242834 24242834 C T TNFRSF19 Silent p.N281N 0.13 TCGA-A6-2674-01 13 31205156 31205156 A G USPL1 Missense_Mutation p.N138S 0.30 tolerated(0.06) benign(0.297) TCGA-A6-2674-01 13 38211102 38211102 C A TRPC4 Missense_Mutation p.D963Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-A6-2674-01 13 66879032 66879032 G T PCDH9 Missense_Mutation p.P1157T 0.06 deleterious(0.05) benign(0.023) TCGA-A6-2674-01 14 104165344 104165344 C T XRCC3 Missense_Mutation p.E278K 0.23 tolerated(0.44) benign(0.009) TCGA-A6-2674-01 14 20848443 20848443 G A TEP1 Missense_Mutation p.H1652Y 0.17 tolerated(1) benign(0.052) TCGA-A6-2674-01 14 23901975 23901975 G C MYH7 Silent p.V125V 0.12 TCGA-A6-2674-01 14 24542841 24542841 C T CPNE6 Missense_Mutation p.P101L 0.13 tolerated(1) benign(0.002) TCGA-A6-2674-01 14 75388086 75388086 C T RPS6KL1 Silent p.A53A 0.21 TCGA-A6-2674-01 14 95906285 95906285 G A SYNE3 Missense_Mutation p.P680L 0.20 tolerated(0.22) benign(0.009) TCGA-A6-2674-01 15 24923286 24923286 A G NPAP1 Missense_Mutation p.T758A 0.06 tolerated(1) benign(0) TCGA-A6-2674-01 15 24926125 24926125 G A NPAP1 3'UTR 0.16 TCGA-A6-2674-01 15 40661511 40661511 G T DISP2 Silent p.G1066G 0.07 TCGA-A6-2674-01 15 59041848 59041854 CCCCTGG - ADAM10 5'UTR 0.09 TCGA-A6-2674-01 15 75693151 75693151 G A SIN3A Nonsense_Mutation p.R553* 0.17 TCGA-A6-2674-01 15 94888387 94888387 C A MCTP2 Silent p.A333A 0.04 TCGA-A6-2674-01 16 20429585 20429585 C T ACSM5 Missense_Mutation p.R137W 0.29 deleterious(0) probably_damaging(1) TCGA-A6-2674-01 16 21696638 21696638 C T OTOA Missense_Mutation p.R119C 0.14 deleterious(0.05) benign(0.031) TCGA-A6-2674-01 16 30735726 30735726 C G SRCAP Missense_Mutation p.Q1661E 0.12 possibly_damaging(0.585) TCGA-A6-2674-01 16 30939201 30939201 G - FBXL19 Frame_Shift_Del p.P205Rfs*26 0.20 TCGA-A6-2674-01 16 58231537 58231537 C T CSNK2A2 Missense_Mutation p.G35D 0.06 deleterious(0.02) possibly_damaging(0.793) TCGA-A6-2674-01 16 61854948 61854948 T G CDH8 Missense_Mutation p.D302A 0.06 deleterious(0.01) probably_damaging(1) TCGA-A6-2674-01 16 77353811 77353811 G A ADAMTS18 Missense_Mutation p.R823C 0.14 deleterious(0) probably_damaging(1) TCGA-A6-2674-01 16 89350737 89350737 C T ANKRD11 Missense_Mutation p.R738H 0.23 probably_damaging(0.964) TCGA-A6-2674-01 17 15207433 15207433 G T TEKT3 Silent p.I431I 0.15 TCGA-A6-2674-01 17 25638613 25638613 C T WSB1 Silent p.F359F 0.09 TCGA-A6-2674-01 17 27208333 27208333 C T FLOT2 Silent p.A325A 0.19 TCGA-A6-2674-01 17 27250949 27250949 C G PHF12 Silent p.L231L 0.14 TCGA-A6-2674-01 17 30529887 30529887 G A RHOT1 Missense_Mutation p.V434I 0.09 tolerated(0.12) benign(0.001) TCGA-A6-2674-01 17 3558320 3558320 C G CTNS Missense_Mutation p.S85C 0.21 tolerated(0.11) possibly_damaging(0.834) TCGA-A6-2674-01 17 39535428 39535428 G A KRT34 Nonsense_Mutation p.R335* 0.11 TCGA-A6-2674-01 17 42255005 42255005 G A ASB16 Missense_Mutation p.R364Q 0.32 tolerated(0.13) benign(0.023) TCGA-A6-2674-01 17 61498147 61498147 G A TANC2 Missense_Mutation p.G1602R 0.07 deleterious_low_confidence(0) possibly_damaging(0.523) TCGA-A6-2674-01 17 66871795 66871795 C T ABCA8 Missense_Mutation p.V1444M 0.05 tolerated(0.09) probably_damaging(0.941) TCGA-A6-2674-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.24 TCGA-A6-2674-01 19 2185861 2185861 T G DOT1L Missense_Mutation p.C45G 0.22 deleterious(0) probably_damaging(0.991) TCGA-A6-2674-01 19 2944918 2944918 G C ZNF77 5'UTR 0.24 TCGA-A6-2674-01 19 45033542 45033542 C A CEACAM20 RNA 0.18 TCGA-A6-2674-01 19 46087878 46087878 C T OPA3 Intron 0.09 TCGA-A6-2674-01 19 46522576 46522576 G A PGLYRP1 Missense_Mutation p.R171W 0.23 deleterious(0) probably_damaging(1) TCGA-A6-2674-01 19 5110773 5110773 C T KDM4B Silent p.P353P 0.21 TCGA-A6-2674-01 19 5229586 5229586 G A PTPRS Silent p.G755G 0.31 TCGA-A6-2674-01 19 5719977 5719977 C A LONP1 Missense_Mutation p.G56V 0.10 tolerated_low_confidence(0.09) possibly_damaging(0.834) TCGA-A6-2674-01 19 9764148 9764148 A C ZNF562 Missense_Mutation p.V253G 0.13 deleterious(0) benign(0.02) TCGA-A6-2674-01 1 111773504 111773504 G A CHI3L2 Missense_Mutation p.V71I 0.11 tolerated(1) benign(0.002) TCGA-A6-2674-01 1 119575743 119575743 G A WARS2 Missense_Mutation p.R292C 0.19 tolerated(0.08) benign(0.007) TCGA-A6-2674-01 1 1337537 1337537 C T MRPL20 Missense_Mutation p.E126K 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-A6-2674-01 1 145473583 145473583 C T ANKRD34A Silent p.C85C 0.11 TCGA-A6-2674-01 1 146727535 146727535 G C CHD1L Missense_Mutation p.D139H 0.08 deleterious(0.01) possibly_damaging(0.617) TCGA-A6-2674-01 1 156354779 156354779 G A RHBG 3'UTR 0.39 TCGA-A6-2674-01 1 158746998 158746998 T C OR6N2 Missense_Mutation p.K143R 0.07 tolerated(0.37) benign(0.019) TCGA-A6-2674-01 1 186158885 186158885 C T HMCN1 Nonsense_Mutation p.R5595* 0.20 TCGA-A6-2674-01 1 192127674 192127674 T G RGS18 5'UTR 0.04 TCGA-A6-2674-01 1 220826690 220826690 C T MARK1 Missense_Mutation p.R662C 0.05 deleterious(0) probably_damaging(0.972) TCGA-A6-2674-01 1 236368428 236368428 C T GPR137B Silent p.T323T 0.09 TCGA-A6-2674-01 1 237872268 237872268 G T RYR2 Missense_Mutation p.D3338Y 0.39 possibly_damaging(0.571) TCGA-A6-2674-01 1 27878096 27878096 G A AHDC1 Silent p.I177I 0.10 TCGA-A6-2674-01 1 34554769 34554769 G A CSMD2 Silent p.H31H 0.15 TCGA-A6-2674-01 1 43828626 43828626 C T CDC20 Silent p.H442H 0.08 TCGA-A6-2674-01 1 70504501 70504501 G T LRRC7 Silent p.V960V 0.04 TCGA-A6-2674-01 1 90478708 90478708 G C ZNF326 Missense_Mutation p.E280Q 0.10 tolerated(0.08) probably_damaging(0.932) TCGA-A6-2674-01 20 30617555 30617555 G A CCM2L Missense_Mutation p.G418R 0.44 deleterious_low_confidence(0.03) benign(0.151) TCGA-A6-2674-01 20 50158943 50158943 G A NFATC2 Silent p.I32I 0.04 TCGA-A6-2674-01 20 60903001 60903001 C T LAMA5 Missense_Mutation p.R1573H 0.11 benign(0.272) TCGA-A6-2674-01 21 31864158 31864158 C A KRTAP19-3 Missense_Mutation p.G40C 0.07 tolerated_low_confidence(0.19) unknown(0) TCGA-A6-2674-01 21 32499427 32499427 G A TIAM1 Silent p.S1363S 0.05 TCGA-A6-2674-01 22 41613060 41613060 G C L3MBTL2 Intron 0.19 TCGA-A6-2674-01 22 44322954 44322954 C A PNPLA3 Silent p.L109L 0.15 TCGA-A6-2674-01 2 131523705 131523705 G A AMER3 3'UTR 0.09 TCGA-A6-2674-01 2 135621107 135621107 G A ACMSD Missense_Mutation p.R131H 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-A6-2674-01 2 158152987 158152987 C T GALNT5 Silent p.V653V 0.06 TCGA-A6-2674-01 2 177015088 177015088 G A HOXD3 5'Flank 0.13 TCGA-A6-2674-01 2 179430005 179430005 C T TTN Missense_Mutation p.V26952I 0.10 TCGA-A6-2674-01 2 198950518 198950518 G A PLCL1 Silent p.A759A 0.14 TCGA-A6-2674-01 2 20871095 20871095 C T GDF7 Silent p.S421S 0.26 TCGA-A6-2674-01 2 234959662 234959662 A T SPP2 Missense_Mutation p.S45C 0.10 deleterious(0.04) possibly_damaging(0.784) TCGA-A6-2674-01 2 239033970 239033970 G A ESPNL Silent p.T349T 0.12 TCGA-A6-2674-01 2 27457397 27457397 G A CAD Silent p.L1210L 0.11 TCGA-A6-2674-01 2 48845014 48845014 A G GTF2A1L Translation_Start_Site p.M1? 0.11 deleterious(0) probably_damaging(0.952) TCGA-A6-2674-01 2 75278309 75278309 G C TACR1 Intron 0.16 TCGA-A6-2674-01 2 99169324 99169324 C T INPP4A Silent p.I418I 0.09 TCGA-A6-2674-01 3 115738432 115738432 G A LSAMP Silent p.N148N 0.16 TCGA-A6-2674-01 3 14176345 14176345 G A TMEM43 Missense_Mutation p.R220H 0.15 tolerated(0.52) benign(0.157) TCGA-A6-2674-01 3 154147312 154147312 G T GPR149 Silent p.T31T 0.10 TCGA-A6-2674-01 3 187088669 187088669 G T RTP4 Missense_Mutation p.Q83H 0.04 tolerated(0.09) benign(0.188) TCGA-A6-2674-01 3 51907892 51907892 G A IQCF5 Missense_Mutation p.R102C 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-A6-2674-01 3 56779369 56779369 G A ARHGEF3 Missense_Mutation p.P277L 0.17 deleterious(0) probably_damaging(0.936) TCGA-A6-2674-01 3 8667232 8667232 G A SSUH2 Missense_Mutation p.S290L 0.14 tolerated(0.39) benign(0.001) TCGA-A6-2674-01 3 97983158 97983158 G C OR5H6 Missense_Mutation p.Q10H 0.10 tolerated_low_confidence(0.09) benign(0.187) TCGA-A6-2674-01 4 106156825 106156825 G A TET2 Missense_Mutation p.E576K 0.10 deleterious(0.03) benign(0.219) TCGA-A6-2674-01 4 126373162 126373162 G T FAT4 Missense_Mutation p.G3664V 0.09 possibly_damaging(0.682) TCGA-A6-2674-01 4 134073195 134073195 C T PCDH10 Missense_Mutation p.R634C 0.04 tolerated(0.18) probably_damaging(0.999) TCGA-A6-2674-01 4 189060646 189060646 C A TRIML1 5'UTR 0.17 TCGA-A6-2674-01 4 57164492 57164492 C G KIAA1211 Missense_Mutation p.L33V 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-A6-2674-01 4 82355030 82355030 G A RASGEF1B Nonsense_Mutation p.Q430* 0.07 TCGA-A6-2674-01 4 88583985 88583985 G T DMP1 Missense_Mutation p.S352I 0.08 deleterious(0) probably_damaging(0.999) TCGA-A6-2674-01 4 89628141 89628141 C T HERC3 3'UTR 0.08 TCGA-A6-2674-01 5 140209347 140209347 C T PCDHA6 Silent p.D557D 0.34 TCGA-A6-2674-01 5 140475149 140475149 G A PCDHB2 Missense_Mutation p.V259I 0.18 tolerated_low_confidence(0.77) benign(0.02) TCGA-A6-2674-01 5 140482345 140482345 G A PCDHB3 Silent p.S704S 0.22 TCGA-A6-2674-01 5 149624797 149624797 G A CAMK2A Intron 0.26 TCGA-A6-2674-01 5 180030222 180030222 G A FLT4 Silent p.R1354R 0.27 TCGA-A6-2674-01 5 26915805 26915805 G A CDH9 Silent p.I152I 0.04 TCGA-A6-2674-01 5 35628615 35628615 C G SPEF2 Missense_Mutation p.L38V 0.15 deleterious(0) probably_damaging(0.998) TCGA-A6-2674-01 5 45262403 45262403 T G HCN1 Missense_Mutation p.N765H 0.07 tolerated_low_confidence(0.16) benign(0.001) TCGA-A6-2674-01 5 76507083 76507083 C T PDE8B Silent p.S111S 0.60 TCGA-A6-2674-01 5 7766897 7766897 C T ADCY2 Missense_Mutation p.A731V 0.17 tolerated(0.34) benign(0.002) TCGA-A6-2674-01 6 10586308 10586308 C T GCNT2 Intron 0.23 TCGA-A6-2674-01 6 107955757 107955757 C T SOBP Missense_Mutation p.S570F 0.23 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-A6-2674-01 6 152712516 152712516 G T SYNE1 Missense_Mutation p.Q2634K 0.16 benign(0.089) TCGA-A6-2674-01 6 160903733 160903733 C A LPAL2 RNA 0.16 TCGA-A6-2674-01 6 32020751 32020751 G A TNXB Silent p.P2935P 0.25 TCGA-A6-2674-01 6 41657513 41657513 C T TFEB Missense_Mutation p.D169N 0.23 tolerated(0.07) benign(0.011) TCGA-A6-2674-01 6 42985284 42985284 C T KLHDC3 Missense_Mutation p.P61L 0.05 tolerated(0.62) benign(0.047) TCGA-A6-2674-01 6 70037714 70037714 T G BAI3 Missense_Mutation p.L990V 0.07 deleterious(0) probably_damaging(0.994) TCGA-A6-2674-01 6 72113266 72113266 A G MIR30A RNA 0.23 TCGA-A6-2674-01 6 90356257 90356257 A G MDN1 Splice_Site p.X5487_splice 0.19 TCGA-A6-2674-01 7 11415310 11415310 T A THSD7A 3'UTR 0.07 TCGA-A6-2674-01 7 136700975 136700975 C G CHRM2 Missense_Mutation p.L455V 0.25 deleterious(0) probably_damaging(0.976) TCGA-A6-2674-01 7 154585847 154585847 C G DPP6 Missense_Mutation p.L399V 0.15 tolerated(0.13) possibly_damaging(0.536) TCGA-A6-2674-01 7 3658746 3658746 C A SDK1 Silent p.G111G 0.12 TCGA-A6-2674-01 7 4249735 4249735 C T SDK1 Missense_Mutation p.A1827V 0.09 tolerated(0.65) benign(0.067) TCGA-A6-2674-01 7 4259800 4259800 C T SDK1 Missense_Mutation p.R1867W 0.06 deleterious(0) probably_damaging(0.93) TCGA-A6-2674-01 7 43679204 43679204 C T COA1 Missense_Mutation p.G140S 0.09 tolerated(0.18) benign(0.013) TCGA-A6-2674-01 7 73771637 73771637 C T CLIP2 Missense_Mutation p.R349C 0.13 deleterious(0) probably_damaging(0.931) TCGA-A6-2674-01 7 74211856 74211856 C T GTF2IRD2 Silent p.L665L 0.21 TCGA-A6-2674-01 7 95657511 95657511 G A DYNC1I1 Missense_Mutation p.A349T 0.12 deleterious(0) probably_damaging(0.952) TCGA-A6-2674-01 8 113304853 113304853 A C CSMD3 Missense_Mutation p.C2901G 0.07 deleterious(0.01) possibly_damaging(0.687) TCGA-A6-2674-01 8 142161840 142161840 C T DENND3 Silent p.F246F 0.05 TCGA-A6-2674-01 8 65494481 65494481 G A BHLHE22 Silent p.T378T 0.18 TCGA-A6-2674-01 8 67364309 67364309 G A ADHFE1 Missense_Mutation p.A286T 0.14 deleterious(0.03) probably_damaging(0.949) TCGA-A6-2674-01 8 97156923 97156923 G A GDF6 Silent p.P412P 0.11 TCGA-A6-2674-01 9 124751847 124751847 C T TTLL11 Missense_Mutation p.R389H 0.11 deleterious(0) probably_damaging(1) TCGA-A6-2674-01 9 125512162 125512162 C A OR1L6 Silent p.G12G 0.10 TCGA-A6-2674-01 9 132719674 132719674 C T FNBP1 Missense_Mutation p.A160T 0.13 tolerated(0.51) possibly_damaging(0.51) TCGA-A6-2674-01 9 136320844 136320844 G A ADAMTS13 Intron 0.27 TCGA-A6-2674-01 9 21227932 21227932 G T IFNA17 Missense_Mutation p.H81N 0.07 deleterious(0.01) possibly_damaging(0.829) TCGA-A6-2674-01 9 35957463 35957463 C T OR2S2 Silent p.P211P 0.17 TCGA-A6-2674-01 9 78853931 78853931 G C PCSK5 Missense_Mutation p.E975Q 0.15 tolerated(0.28) benign(0.003) TCGA-A6-2674-01 X 7023878 7023878 A G HDHD1 Silent p.D44D 0.12 TCGA-A6-2674-01 X 80047394 80047394 G C BRWD3 Missense_Mutation p.P130R 0.11 deleterious(0) possibly_damaging(0.558) TCGA-A6-2674-01 X 89177518 89177518 A G TGIF2LX Missense_Mutation p.K145R 0.09 tolerated(0.23) benign(0.086) TCGA-A6-2675-01 10 15177300 15177300 A T NMT2 Missense_Mutation p.W122R 0.13 deleterious(0) probably_damaging(0.999) TCGA-A6-2675-01 10 15177301 15177301 A T NMT2 Missense_Mutation p.F121L 0.12 deleterious(0) probably_damaging(0.993) TCGA-A6-2675-01 10 30336566 30336566 G A KIAA1462 Missense_Mutation p.T59M 0.23 tolerated(0.08) possibly_damaging(0.812) TCGA-A6-2675-01 10 55566566 55566566 C T PCDH15 Missense_Mutation p.A1607T 0.10 tolerated_low_confidence(0.85) benign(0) TCGA-A6-2675-01 10 72015036 72015036 C T NPFFR1 Missense_Mutation p.A324T 0.39 deleterious(0) possibly_damaging(0.821) TCGA-A6-2675-01 10 7214580 7214580 G A SFMBT2 Silent p.I676I 0.35 TCGA-A6-2675-01 10 73575117 73575117 C T CDH23 3'UTR 0.20 TCGA-A6-2675-01 10 75911034 75911034 A G ADK 5'UTR 0.21 TCGA-A6-2675-01 10 95360240 95360240 C T RBP4 Missense_Mutation p.A89T 0.12 deleterious(0) probably_damaging(0.982) TCGA-A6-2675-01 11 102667760 102667760 A G MMP1 Missense_Mutation p.S162P 0.13 deleterious(0) probably_damaging(0.99) TCGA-A6-2675-01 11 11348695 11348695 C T GALNT18 Missense_Mutation p.D484N 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-A6-2675-01 11 118773590 118773590 G T BCL9L Missense_Mutation p.P288T 0.33 possibly_damaging(0.908) TCGA-A6-2675-01 11 124789688 124789688 C T HEPN1 Silent p.G14G 0.20 TCGA-A6-2675-01 11 130331476 130331476 C T ADAMTS15 Silent p.D350D 0.11 TCGA-A6-2675-01 11 134121181 134121181 C T THYN1 Missense_Mutation p.R22H 0.10 tolerated(0.07) benign(0.008) TCGA-A6-2675-01 11 17419957 17419957 C T ABCC8 Missense_Mutation p.E1228K 0.28 tolerated(0.11) benign(0.009) TCGA-A6-2675-01 11 18111016 18111016 A T SAAL1 Missense_Mutation p.F211I 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-A6-2675-01 11 1955222 1955222 G A TNNT3 Missense_Mutation p.R117H 0.18 deleterious(0) probably_damaging(0.969) TCGA-A6-2675-01 11 5011862 5011862 G A MMP26 Missense_Mutation p.A119T 0.08 tolerated(0.91) benign(0) TCGA-A6-2675-01 11 51515943 51515943 G A OR4C46 Missense_Mutation p.C221Y 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-A6-2675-01 11 78383150 78383150 G A TENM4 Silent p.Y1907Y 0.24 TCGA-A6-2675-01 11 99827670 99827670 G T CNTN5 Missense_Mutation p.C269F 0.28 deleterious(0) probably_damaging(1) TCGA-A6-2675-01 12 104373695 104373695 T C TDG Missense_Mutation p.S85P 0.28 tolerated(0.31) benign(0.004) TCGA-A6-2675-01 12 109605701 109605701 G C ACACB Missense_Mutation p.V263L 0.20 deleterious(0.02) possibly_damaging(0.863) TCGA-A6-2675-01 12 126138538 126138538 A C TMEM132B Missense_Mutation p.Q840P 0.13 tolerated(0.06) benign(0.002) TCGA-A6-2675-01 12 18762511 18762511 T C PIK3C2G Missense_Mutation p.I1336T 0.25 deleterious(0) possibly_damaging(0.694) TCGA-A6-2675-01 12 53204578 53204578 G A KRT4 Missense_Mutation p.R234C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-A6-2675-01 12 65857005 65857005 C T MSRB3 Missense_Mutation p.S161L 0.14 deleterious(0) probably_damaging(0.993) TCGA-A6-2675-01 12 85500353 85500353 T C LRRIQ1 Missense_Mutation p.S1113P 0.08 deleterious(0.01) possibly_damaging(0.583) TCGA-A6-2675-01 12 9004829 9004829 G A A2ML1 Silent p.S829S 0.25 TCGA-A6-2675-01 12 91348412 91348412 C T CCER1 Silent p.S36S 0.15 TCGA-A6-2675-01 13 40229814 40229814 G A COG6 5'UTR 0.07 TCGA-A6-2675-01 14 50558363 50558363 C T C14orf183 Missense_Mutation p.G69R 0.32 tolerated_low_confidence(0.8) probably_damaging(0.98) TCGA-A6-2675-01 14 51208333 51208333 A C NIN Silent p.S1805S 0.19 TCGA-A6-2675-01 14 69994015 69994015 G A PLEKHD1 Silent p.E389E 0.12 TCGA-A6-2675-01 14 74972887 74972887 G A LTBP2 Silent p.N1347N 0.27 TCGA-A6-2675-01 15 44903115 44903115 C A SPG11 Missense_Mutation p.V1072L 0.42 tolerated(0.23) possibly_damaging(0.621) TCGA-A6-2675-01 15 56386345 56386345 G T RFX7 Missense_Mutation p.T1194N 0.36 deleterious_low_confidence(0.04) benign(0.25) TCGA-A6-2675-01 15 65426069 65426069 C T PDCD7 Silent p.P17P 0.08 TCGA-A6-2675-01 15 79585824 79585824 G A ANKRD34C Silent p.K66K 0.51 TCGA-A6-2675-01 16 20451841 20451841 C T ACSM5 3'UTR 0.09 TCGA-A6-2675-01 16 322928 322928 G A RGS11 Silent p.P197P 0.36 TCGA-A6-2675-01 16 3304671 3304671 G A MEFV Missense_Mutation p.R133W 0.22 deleterious(0.01) benign(0.025) TCGA-A6-2675-01 16 4408020 4408020 C T CORO7 Missense_Mutation p.A848T 0.18 tolerated(0.16) benign(0.081) TCGA-A6-2675-01 16 66943207 66943207 C T CDH16 Silent p.S785S 0.29 TCGA-A6-2675-01 17 21825411 21825411 G A FAM27L RNA 0.40 TCGA-A6-2675-01 17 33504119 33504119 C A UNC45B Silent p.S705S 0.13 TCGA-A6-2675-01 17 39019859 39019859 C T KRT12 Missense_Mutation p.G325R 0.22 tolerated(0.35) benign(0.067) TCGA-A6-2675-01 17 40058009 40058009 T C ACLY Missense_Mutation p.I375V 0.21 tolerated(0.13) benign(0.002) TCGA-A6-2675-01 17 58511594 58511594 G T C17orf64 3'Flank 0.44 TCGA-A6-2675-01 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.37 TCGA-A6-2675-01 17 7909710 7909710 C T GUCY2D Silent p.D352D 0.39 TCGA-A6-2675-01 18 19996423 19996423 G A CTAGE1 Missense_Mutation p.A451V 0.40 deleterious(0.03) possibly_damaging(0.844) TCGA-A6-2675-01 18 40850473 40850474 TT - SYT4 Frame_Shift_Del p.I370Mfs*3 0.30 TCGA-A6-2675-01 18 42643579 42643579 G A SETBP1 Silent p.P1569P 0.06 TCGA-A6-2675-01 18 50976959 50976959 G T DCC Missense_Mutation p.G1107C 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-2675-01 18 9258417 9258417 T C ANKRD12 Silent p.L1718L 0.09 TCGA-A6-2675-01 19 11651957 11651957 C T CNN1 Missense_Mutation p.R44C 0.32 tolerated(0.1) probably_damaging(0.941) TCGA-A6-2675-01 19 1483423 1483423 C T PCSK4 Silent p.S477S 0.46 TCGA-A6-2675-01 19 3623724 3623724 C T CACTIN Missense_Mutation p.G202R 0.19 deleterious(0.03) benign(0.236) TCGA-A6-2675-01 19 36507848 36507848 C T CLIP3 Missense_Mutation p.R517Q 0.27 tolerated(0.09) probably_damaging(0.968) TCGA-A6-2675-01 19 37676327 37676327 C T ZNF585B Silent p.Q704Q 0.11 TCGA-A6-2675-01 19 49954096 49954096 C T PIH1D1 Missense_Mutation p.E34K 0.07 tolerated(0.22) benign(0.037) TCGA-A6-2675-01 19 53209747 53209747 A G ZNF611 Silent p.A187A 0.12 TCGA-A6-2675-01 19 57328000 57328000 G A PEG3 Missense_Mutation p.R604C 0.14 tolerated(0.18) probably_damaging(0.939) TCGA-A6-2675-01 19 6495089 6495089 C T TUBB4A 3'UTR 0.31 TCGA-A6-2675-01 1 111060872 111060872 G A KCNA10 Missense_Mutation p.R180W 0.17 deleterious(0.05) probably_damaging(0.947) TCGA-A6-2675-01 1 11850646 11850646 C T MTHFR 3'UTR 0.23 TCGA-A6-2675-01 1 156018344 156018344 C T UBQLN4 Missense_Mutation p.R283H 0.12 deleterious(0.03) possibly_damaging(0.611) TCGA-A6-2675-01 1 175066603 175066603 G A TNN Missense_Mutation p.A547T 0.04 tolerated(0.12) benign(0.096) TCGA-A6-2675-01 1 175104993 175104993 C T TNN Missense_Mutation p.R1115W 0.37 deleterious(0) probably_damaging(1) TCGA-A6-2675-01 1 180056834 180056834 C A CEP350 Missense_Mutation p.P2136H 0.13 possibly_damaging(0.841) TCGA-A6-2675-01 1 223933076 223933076 G A CAPN2 Silent p.L165L 0.18 TCGA-A6-2675-01 1 236711497 236711497 G A LGALS8 3'UTR 0.22 TCGA-A6-2675-01 1 246729449 246729449 C T TFB2M 5'UTR 0.31 TCGA-A6-2675-01 1 248525484 248525484 G A OR2T4 Missense_Mutation p.R201H 0.17 deleterious(0) benign(0.009) TCGA-A6-2675-01 1 26606582 26606582 C T SH3BGRL3 5'UTR 0.17 TCGA-A6-2675-01 1 40928730 40928730 C T ZFP69B Silent p.T358T 0.25 TCGA-A6-2675-01 1 64605829 64605829 T C ROR1 Silent p.S216S 0.09 TCGA-A6-2675-01 1 98015193 98015193 C T DPYD Missense_Mutation p.V483I 0.22 tolerated(0.13) benign(0.006) TCGA-A6-2675-01 20 47569349 47569349 C T ARFGEF2 Silent p.I177I 0.17 TCGA-A6-2675-01 20 55070330 55070330 C G GCNT7 Missense_Mutation p.A210P 0.19 deleterious(0.04) probably_damaging(0.973) TCGA-A6-2675-01 20 944676 944676 C T RSPO4 Missense_Mutation p.R166Q 0.30 deleterious(0) probably_damaging(0.99) TCGA-A6-2675-01 21 19651295 19651295 G A TMPRSS15 Missense_Mutation p.T917M 0.22 tolerated(0.14) benign(0.025) TCGA-A6-2675-01 21 37418198 37418198 C T SETD4 Silent p.A136A 0.15 TCGA-A6-2675-01 21 46101842 46101842 G A KRTAP12-1 Missense_Mutation p.A66V 0.17 tolerated(1) possibly_damaging(0.798) TCGA-A6-2675-01 22 36702019 36702019 G A MYH9 Nonsense_Mutation p.Q706* 0.11 TCGA-A6-2675-01 22 38978490 38978490 C T FAM227A Intron 0.10 TCGA-A6-2675-01 22 42271563 42271563 C T SREBF2 Silent p.I407I 0.33 TCGA-A6-2675-01 2 11338889 11338889 A G ROCK2 Silent p.T974T 0.12 TCGA-A6-2675-01 2 11800192 11800192 G A NTSR2 Silent p.Y322Y 0.13 TCGA-A6-2675-01 2 121748282 121748282 G A GLI2 3'UTR 0.17 TCGA-A6-2675-01 2 169574447 169574447 C G CERS6 Silent p.A268A 0.31 TCGA-A6-2675-01 2 75425861 75425861 G A TACR1 Missense_Mutation p.T67M 0.12 deleterious(0) probably_damaging(1) TCGA-A6-2675-01 3 30729968 30729968 C T TGFBR2 Nonsense_Mutation p.R522* 0.14 TCGA-A6-2675-01 3 38770208 38770208 G A SCN10A Missense_Mutation p.A822V 0.18 tolerated(0.29) benign(0.005) TCGA-A6-2675-01 3 49215967 49215967 G A C3orf84 Missense_Mutation p.P49L 0.34 deleterious(0.01) possibly_damaging(0.814) TCGA-A6-2675-01 4 106158561 106158561 T C TET2 Intron 0.16 TCGA-A6-2675-01 4 123855787 123855787 A T SPATA5 Missense_Mutation p.Q347H 0.31 tolerated(0.09) benign(0.003) TCGA-A6-2675-01 4 126239021 126239021 C T FAT4 Silent p.S485S 0.18 TCGA-A6-2675-01 4 15539575 15539575 G C CC2D2A Missense_Mutation p.E606D 0.26 tolerated(0.25) benign(0.031) TCGA-A6-2675-01 4 186544761 186544761 C A SORBS2 Missense_Mutation p.V704L 0.21 tolerated(0.07) benign(0.319) TCGA-A6-2675-01 4 44449878 44449878 G A KCTD8 Silent p.R221R 0.33 TCGA-A6-2675-01 4 983941 983941 G A SLC26A1 Silent p.C262C 0.15 TCGA-A6-2675-01 5 112116559 112116560 - A APC Frame_Shift_Ins p.Q203Tfs*49 0.29 TCGA-A6-2675-01 5 112154942 112154942 C T APC Nonsense_Mutation p.R405* 0.20 TCGA-A6-2675-01 5 112175676 112175677 AG - APC Frame_Shift_Del p.S1465Wfs*3 0.10 TCGA-A6-2675-01 5 135551948 135551948 G A TRPC7 Missense_Mutation p.L787F 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-A6-2675-01 5 13753355 13753355 C T DNAH5 Missense_Mutation p.R3620Q 0.21 possibly_damaging(0.553) TCGA-A6-2675-01 5 151784344 151784344 G A NMUR2 Missense_Mutation p.P111S 0.36 deleterious(0) probably_damaging(1) TCGA-A6-2675-01 5 33963887 33963887 T C SLC45A2 Missense_Mutation p.Y266C 0.14 tolerated(0.17) benign(0.005) TCGA-A6-2675-01 6 27776336 27776336 C T HIST1H2AI Silent p.L117L 0.15 TCGA-A6-2675-01 6 31726009 31726009 G A MSH5 Missense_Mutation p.R361Q 0.41 tolerated(0.56) benign(0.002) TCGA-A6-2675-01 6 31829814 31829814 C G NEU1 Missense_Mutation p.G105A 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-A6-2675-01 6 3225711 3225711 G A TUBB2B Silent p.N204N 0.36 TCGA-A6-2675-01 6 350879 350879 G T DUSP22 3'UTR 0.07 TCGA-A6-2675-01 6 46797120 46797120 C T MEP1A Missense_Mutation p.T319I 0.20 deleterious(0) probably_damaging(1) TCGA-A6-2675-01 7 139091936 139091936 C A LUC7L2 Missense_Mutation p.S242Y 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-A6-2675-01 7 139754505 139754505 A G PARP12 Silent p.D273D 0.38 TCGA-A6-2675-01 7 141464393 141464393 C T TAS2R3 Silent p.T145T 0.49 TCGA-A6-2675-01 7 148876724 148876724 G A ZNF398 Missense_Mutation p.R587H 0.09 deleterious(0.03) probably_damaging(0.984) TCGA-A6-2675-01 7 150217082 150217082 G A GIMAP7 Missense_Mutation p.R7H 0.07 tolerated(0.08) benign(0.002) TCGA-A6-2675-01 7 1785839 1785839 G A ELFN1 Missense_Mutation p.R536H 0.47 tolerated(0.14) benign(0.031) TCGA-A6-2675-01 7 20199214 20199214 G A MACC1 Missense_Mutation p.P257L 0.11 deleterious(0.01) benign(0.09) TCGA-A6-2675-01 7 34698071 34698071 G A NPSR1 Missense_Mutation p.G16E 0.51 tolerated(0.33) benign(0.047) TCGA-A6-2675-01 7 43917323 43917323 G A URGCP Missense_Mutation p.P580L 0.15 tolerated(0.29) benign(0.312) TCGA-A6-2675-01 7 55433773 55433773 A G LANCL2 Missense_Mutation p.M19V 0.09 deleterious(0.05) probably_damaging(0.937) TCGA-A6-2675-01 7 6063046 6063046 C T AIMP2 Silent p.N229N 0.05 TCGA-A6-2675-01 7 89929307 89929307 A G C7orf63 Missense_Mutation p.I662V 0.39 tolerated(0.24) possibly_damaging(0.768) TCGA-A6-2675-01 7 90896614 90896614 C T FZD1 3'UTR 0.12 TCGA-A6-2675-01 8 30210440 30210440 G A TUBBP1 RNA 0.26 TCGA-A6-2675-01 8 85785625 85785625 G A RALYL Silent p.A239A 0.09 TCGA-A6-2675-01 9 108457045 108457045 G A TMEM38B Missense_Mutation p.R35H 0.33 tolerated(0.42) benign(0.002) TCGA-A6-2675-01 9 109686870 109686870 G A ZNF462 Missense_Mutation p.R226H 0.11 possibly_damaging(0.522) TCGA-A6-2675-01 9 130573246 130573246 T C FPGS Missense_Mutation p.V437A 0.08 tolerated(0.09) benign(0.275) TCGA-A6-2675-01 9 133960973 133960973 G A LAMC3 Missense_Mutation p.V1365I 0.34 tolerated(0.34) benign(0.008) TCGA-A6-2675-01 9 139914894 139914894 G A ABCA2 Missense_Mutation p.T440M 0.13 deleterious(0) probably_damaging(0.992) TCGA-A6-2675-01 X 105124239 105124239 C T NRK Silent p.N57N 0.14 TCGA-A6-2675-01 X 23801369 23801369 G A SAT1 5'UTR 0.25 TCGA-A6-2675-01 X 41519752 41519752 C T CASK Silent p.L257L 0.57 TCGA-A6-2675-01 X 69478681 69478681 C T P2RY4 Missense_Mutation p.R265H 0.64 deleterious(0.02) possibly_damaging(0.825) TCGA-A6-2675-01 X 77289110 77289110 A G ATP7A Missense_Mutation p.D1101G 0.69 tolerated(1) benign(0.004) TCGA-A6-2675-01 X 78426576 78426576 G C GPR174 Silent p.V24V 0.11 TCGA-A6-2677-01 10 104660430 104660430 C T AS3MT Silent p.G367G 0.43 TCGA-A6-2677-01 10 108924062 108924062 G A SORCS1 Missense_Mutation p.R75C 0.20 deleterious_low_confidence(0.04) benign(0.09) TCGA-A6-2677-01 10 112266749 112266749 C G DUSP5 Silent p.S195S 0.39 TCGA-A6-2677-01 10 129537072 129537072 C T FOXI2 Missense_Mutation p.A267V 0.43 tolerated(0.35) possibly_damaging(0.75) TCGA-A6-2677-01 10 13217573 13217573 G A MCM10 Missense_Mutation p.R220Q 0.48 tolerated(0.25) benign(0.018) TCGA-A6-2677-01 10 135015218 135015218 G A KNDC1 Missense_Mutation p.R1068Q 0.10 tolerated(0.64) benign(0.004) TCGA-A6-2677-01 10 135015321 135015321 C T KNDC1 Silent p.C1102C 0.47 TCGA-A6-2677-01 10 26462641 26462641 A C MYO3A Silent p.R1150R 0.09 TCGA-A6-2677-01 10 30727813 30727813 C T MAP3K8 Intron 0.49 TCGA-A6-2677-01 10 38645414 38645414 G C HSD17B7P2 RNA 0.38 TCGA-A6-2677-01 10 61815427 61815428 - C ANK3 Frame_Shift_Ins p.S4352Vfs*2 0.36 TCGA-A6-2677-01 10 73051434 73051434 G A UNC5B Missense_Mutation p.D514N 0.52 tolerated(0.5) benign(0.088) TCGA-A6-2677-01 10 89118013 89118013 C A NUTM2D 5'UTR 0.20 TCGA-A6-2677-01 11 10647667 10647667 C T MRVI1 Missense_Mutation p.R405Q 0.46 tolerated(0.14) benign(0.016) TCGA-A6-2677-01 11 118955677 118955677 C T HMBS 5'UTR 0.34 TCGA-A6-2677-01 11 124545187 124545187 C T SPA17 Silent p.H9H 0.39 TCGA-A6-2677-01 11 13443359 13443359 C A BTBD10 Missense_Mutation p.G43V 0.38 tolerated_low_confidence(0.18) benign(0.009) TCGA-A6-2677-01 11 17426153 17426153 C T ABCC8 Missense_Mutation p.V1155I 0.42 tolerated(0.11) benign(0.011) TCGA-A6-2677-01 11 17801047 17801047 G A KCNC1 Missense_Mutation p.E517K 0.46 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-A6-2677-01 11 55579123 55579123 T - OR5L1 Frame_Shift_Del p.F62Sfs*8 0.09 TCGA-A6-2677-01 11 64645965 64645965 G A EHD1 5'UTR 0.38 TCGA-A6-2677-01 11 7111074 7111074 C T RBMXL2 Silent p.R241R 0.42 TCGA-A6-2677-01 11 71946463 71946463 C T INPPL1 Missense_Mutation p.T876M 0.38 deleterious(0.04) benign(0.439) TCGA-A6-2677-01 11 92523337 92523337 G A FAT3 Missense_Mutation p.E1522K 0.42 possibly_damaging(0.557) TCGA-A6-2677-01 12 104144470 104144470 C T STAB2 Silent p.D2184D 0.89 TCGA-A6-2677-01 12 11061548 11061548 G A TAS2R13 Missense_Mutation p.P117L 0.36 tolerated(0.8) benign(0.012) TCGA-A6-2677-01 12 11091788 11091788 T C TAS2R14 Missense_Mutation p.S7G 0.38 tolerated(0.36) benign(0.02) TCGA-A6-2677-01 12 113725998 113725998 C T TPCN1 Silent p.N627N 0.84 TCGA-A6-2677-01 12 117290562 117290562 C T RNFT2 3'Flank 0.45 TCGA-A6-2677-01 12 129569098 129569098 G A TMEM132D Silent p.S531S 0.54 TCGA-A6-2677-01 12 33031217 33031217 G T PKP2 Silent p.I199I 0.62 TCGA-A6-2677-01 12 7188009 7188009 C T C1R Missense_Mutation p.A597T 0.54 tolerated(0.54) benign(0.066) TCGA-A6-2677-01 12 7947344 7947344 G A NANOG Missense_Mutation p.G191R 0.36 tolerated(0.16) benign(0.167) TCGA-A6-2677-01 12 8902463 8902463 C T RIMKLB Missense_Mutation p.R61W 0.14 deleterious(0.02) possibly_damaging(0.836) TCGA-A6-2677-01 12 91502778 91502778 C A LUM Splice_Site 0.41 TCGA-A6-2677-01 13 23907183 23907183 G T SACS Missense_Mutation p.A3611D 0.49 probably_damaging(0.997) TCGA-A6-2677-01 13 46549603 46549612 CTCTCTCTCC - ZC3H13 Frame_Shift_Del p.R758Sfs*104 0.22 TCGA-A6-2677-01 13 79177569 79177569 G A POU4F1 5'UTR 0.53 TCGA-A6-2677-01 13 86370348 86370348 T A SLITRK6 Missense_Mutation p.N99I 0.38 tolerated(0.16) possibly_damaging(0.58) TCGA-A6-2677-01 14 21109754 21109755 AC - OR6S1 Frame_Shift_Del p.F33Sfs*21 0.30 TCGA-A6-2677-01 14 23842268 23842268 C T IL25 5'UTR 0.51 TCGA-A6-2677-01 14 26917331 26917331 G T NOVA1 Missense_Mutation p.A453E 0.40 deleterious(0) probably_damaging(0.999) TCGA-A6-2677-01 14 36987117 36987117 C T NKX2-1 Missense_Mutation p.R191H 0.27 deleterious(0) probably_damaging(0.966) TCGA-A6-2677-01 14 74759072 74759072 G A ABCD4 Nonsense_Mutation p.Q346* 0.14 TCGA-A6-2677-01 14 75415227 75415227 G A PGF Silent p.H125H 0.39 TCGA-A6-2677-01 15 23932257 23932257 C T NDN Silent p.A36A 0.82 TCGA-A6-2677-01 15 48543870 48543870 G C SLC12A1 Missense_Mutation p.L615F 0.76 deleterious(0.04) probably_damaging(0.932) TCGA-A6-2677-01 15 73029942 73029942 G T BBS4 3'UTR 0.70 TCGA-A6-2677-01 15 89385013 89385013 G T ACAN Missense_Mutation p.K224N 0.10 deleterious(0) unknown(0) TCGA-A6-2677-01 16 2522609 2522609 C T NTN3 Missense_Mutation p.R303W 0.38 deleterious(0.01) benign(0.02) TCGA-A6-2677-01 16 31473798 31473798 C T ARMC5 Silent p.A310A 0.54 TCGA-A6-2677-01 16 58079375 58079375 G T MMP15 3'UTR 0.25 TCGA-A6-2677-01 16 70935080 70935080 G A HYDIN Missense_Mutation p.R2959C 0.21 probably_damaging(0.942) TCGA-A6-2677-01 16 70954748 70954748 G A HYDIN Missense_Mutation p.R2511W 0.26 probably_damaging(0.942) TCGA-A6-2677-01 17 2966351 2966351 A G OR1D5 Missense_Mutation p.L184P 0.69 deleterious(0) probably_damaging(1) TCGA-A6-2677-01 17 41165087 41165087 C G IFI35 Missense_Mutation p.I48M 0.37 tolerated(0.26) benign(0.037) TCGA-A6-2677-01 17 78196459 78196459 C A SLC26A11 Silent p.G80G 0.07 TCGA-A6-2677-01 17 78444661 78444661 G A NPTX1 Silent p.Y417Y 0.75 TCGA-A6-2677-01 17 78681705 78681705 G A RPTOR Missense_Mutation p.R138H 0.72 deleterious(0) possibly_damaging(0.708) TCGA-A6-2677-01 17 962086 962086 G A ABR Missense_Mutation p.R402W 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-A6-2677-01 18 116855 116855 G A ROCK1P1 RNA 0.80 TCGA-A6-2677-01 18 65179108 65179108 C T DSEL Missense_Mutation p.S923N 0.15 tolerated(0.45) benign(0.009) TCGA-A6-2677-01 18 74639075 74639075 G A ZNF236 Silent p.L1368L 0.79 TCGA-A6-2677-01 19 10685624 10685624 C T AP1M2 Missense_Mutation p.G377R 0.44 tolerated(0.51) benign(0.003) TCGA-A6-2677-01 19 1505955 1505955 C T ADAMTSL5 3'UTR 0.31 TCGA-A6-2677-01 19 18001745 18001745 G A SLC5A5 Missense_Mutation p.A568T 0.41 tolerated(0.75) benign(0.001) TCGA-A6-2677-01 19 22836165 22836165 C T ZNF492 5'UTR 0.30 TCGA-A6-2677-01 19 22847861 22847861 C A ZNF492 Missense_Mutation p.L464I 0.09 deleterious(0.01) probably_damaging(0.934) TCGA-A6-2677-01 19 36362583 36362583 C T APLP1 Missense_Mutation p.R203C 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-A6-2677-01 19 3646020 3646020 C T PIP5K1C Missense_Mutation p.E433K 0.41 tolerated(0.12) possibly_damaging(0.86) TCGA-A6-2677-01 19 37005860 37005860 T C ZNF260 Missense_Mutation p.Q94R 0.38 tolerated(0.22) benign(0.002) TCGA-A6-2677-01 19 41762482 41762482 T C AXL Missense_Mutation p.L721P 0.46 deleterious(0) probably_damaging(0.999) TCGA-A6-2677-01 19 49793761 49793761 G A SLC6A16 Intron 0.33 TCGA-A6-2677-01 19 49869073 49869073 G A DKKL1 Silent p.E116E 0.21 TCGA-A6-2677-01 19 51411737 51411737 C T KLK4 Missense_Mutation p.V164M 0.36 tolerated(0.14) possibly_damaging(0.636) TCGA-A6-2677-01 19 56011498 56011498 G A SSC5D Missense_Mutation p.R674Q 0.48 benign(0.232) TCGA-A6-2677-01 19 56369458 56369458 C T NLRP4 Silent p.F233F 0.50 TCGA-A6-2677-01 1 104163180 104163180 A T AMY2A Missense_Mutation p.D251V 0.24 deleterious(0) probably_damaging(0.952) TCGA-A6-2677-01 1 11147910 11147910 C T EXOSC10 Missense_Mutation p.V298M 0.78 tolerated(0.11) possibly_damaging(0.655) TCGA-A6-2677-01 1 118526448 118526448 G A SPAG17 Missense_Mutation p.S1953F 0.49 tolerated(0.72) benign(0.388) TCGA-A6-2677-01 1 145533509 145533509 G A ITGA10 Silent p.Q464Q 0.38 TCGA-A6-2677-01 1 148582526 148582526 C T NBPF15 Missense_Mutation p.H254Y 0.65 tolerated(0.05) possibly_damaging(0.579) TCGA-A6-2677-01 1 151378125 151378125 G T POGZ Missense_Mutation p.S1129Y 0.58 deleterious(0) probably_damaging(0.999) TCGA-A6-2677-01 1 156640229 156640229 C G NES Missense_Mutation p.G1251R 0.36 deleterious(0.03) benign(0.132) TCGA-A6-2677-01 1 179983619 179983619 A G CEP350 Silent p.Q677Q 0.61 TCGA-A6-2677-01 1 180905784 180905784 G A KIAA1614 Silent p.P913P 0.31 TCGA-A6-2677-01 1 182922048 182922048 G A SHCBP1L Missense_Mutation p.P74L 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.731) TCGA-A6-2677-01 1 200842462 200842462 G A GPR25 Silent p.A99A 0.50 TCGA-A6-2677-01 1 207103560 207103560 G A PIGR 3'UTR 0.70 TCGA-A6-2677-01 1 210334345 210334345 A G SYT14 Silent p.K606K 0.08 TCGA-A6-2677-01 1 226027015 226027015 G A EPHX1 Silent p.L230L 0.56 TCGA-A6-2677-01 1 231359957 231359957 C T C1orf131 3'UTR 0.57 TCGA-A6-2677-01 1 234452357 234452357 G A SLC35F3 Missense_Mutation p.A280T 0.57 tolerated(0.06) probably_damaging(0.999) TCGA-A6-2677-01 1 35321378 35321378 C T SMIM12 Silent p.T67T 0.42 TCGA-A6-2677-01 1 36068845 36068845 C A PSMB2 3'UTR 0.51 TCGA-A6-2677-01 1 70904898 70904898 A C CTH 3'UTR 0.31 TCGA-A6-2677-01 20 1592224 1592224 G C SIRPB1 Intron 0.50 TCGA-A6-2677-01 20 17207954 17207954 A G PCSK2 Missense_Mutation p.K2E 0.23 tolerated_low_confidence(0.23) benign(0) TCGA-A6-2677-01 20 44676667 44676667 C T SLC12A5 Missense_Mutation p.A675V 0.25 deleterious(0) probably_damaging(0.983) TCGA-A6-2677-01 20 49232571 49232571 G A FAM65C Missense_Mutation p.R102C 0.22 tolerated(0.08) benign(0.001) TCGA-A6-2677-01 20 57415326 57415326 C T RP4-806M20.3 5'Flank 0.67 TCGA-A6-2677-01 20 62839475 62839475 C T MYT1 Missense_Mutation p.P309L 0.39 benign(0.03) TCGA-A6-2677-01 22 31500995 31500995 C T SELM Silent p.A133A 0.50 TCGA-A6-2677-01 22 46929795 46929795 G A CELSR1 Silent p.L1091L 0.57 TCGA-A6-2677-01 22 51183402 51183402 C T ACR Nonsense_Mutation p.R345* 0.44 TCGA-A6-2677-01 2 144008151 144008151 C A ARHGAP15 Missense_Mutation p.S152R 0.42 deleterious(0.03) possibly_damaging(0.774) TCGA-A6-2677-01 2 152226604 152226604 C T TNFAIP6 Silent p.Y155Y 0.46 TCGA-A6-2677-01 2 170062574 170062574 G A LRP2 Silent p.R2505R 0.08 TCGA-A6-2677-01 2 175436856 175436856 C T WIPF1 Missense_Mutation p.R226H 0.11 deleterious(0) probably_damaging(0.991) TCGA-A6-2677-01 2 179402512 179402512 A T TTN Missense_Mutation p.L33141H 0.42 TCGA-A6-2677-01 2 179611639 179611639 C T TTN Intron 0.36 TCGA-A6-2677-01 2 188216984 188216984 T G CALCRL Missense_Mutation p.N329H 0.39 tolerated(0.62) benign(0.003) TCGA-A6-2677-01 2 219536762 219536762 G A RNF25 5'UTR 0.51 TCGA-A6-2677-01 2 227886832 227886832 C A COL4A4 Missense_Mutation p.G1383V 0.38 unknown(0) TCGA-A6-2677-01 2 231112660 231112660 G T SP140 Missense_Mutation p.A258S 0.41 tolerated(0.76) benign(0.201) TCGA-A6-2677-01 2 238258800 238258800 C T COL6A3 Missense_Mutation p.R2290H 0.39 unknown(0) TCGA-A6-2677-01 2 37406712 37406712 G A SULT6B1 Nonsense_Mutation p.R102* 0.36 TCGA-A6-2677-01 2 5832900 5832900 G A SOX11 Missense_Mutation p.R16Q 0.38 deleterious(0.05) benign(0.215) TCGA-A6-2677-01 3 138037034 138037034 C T NME9 Missense_Mutation p.E53K 0.40 tolerated(0.05) benign(0.031) TCGA-A6-2677-01 3 14535316 14535316 G A SLC6A6 3'Flank 0.10 TCGA-A6-2677-01 3 147128516 147128516 C T ZIC1 Missense_Mutation p.A206V 0.51 tolerated(0.25) possibly_damaging(0.882) TCGA-A6-2677-01 3 151162860 151162860 A G IGSF10 Missense_Mutation p.F1637L 0.06 tolerated(0.78) benign(0.01) TCGA-A6-2677-01 3 167506962 167506962 G T SERPINI1 Missense_Mutation p.A16S 0.44 tolerated(0.99) benign(0.092) TCGA-A6-2677-01 3 47044169 47044169 G A NBEAL2 Missense_Mutation p.R1779H 0.46 deleterious(0.01) benign(0.158) TCGA-A6-2677-01 3 47452777 47452777 C A PTPN23 Missense_Mutation p.D1163E 0.62 possibly_damaging(0.666) TCGA-A6-2677-01 3 49060342 49060342 A G NDUFAF3 Missense_Mutation p.E124G 0.13 deleterious(0.03) probably_damaging(0.969) TCGA-A6-2677-01 3 68802091 68802091 C T FAM19A4 Missense_Mutation p.R70Q 0.10 tolerated(0.09) probably_damaging(0.998) TCGA-A6-2677-01 3 8988905 8988905 G A RAD18 Missense_Mutation p.R89W 0.40 deleterious(0) probably_damaging(0.991) TCGA-A6-2677-01 4 119154232 119154232 A C NDST3 Missense_Mutation p.K629Q 0.35 tolerated(0.24) probably_damaging(0.977) TCGA-A6-2677-01 4 128951772 128951772 C T C4orf29 Nonsense_Mutation p.R396* 0.43 TCGA-A6-2677-01 4 134072234 134072234 C T PCDH10 Silent p.S313S 0.45 TCGA-A6-2677-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.50 deleterious(0) probably_damaging(1) TCGA-A6-2677-01 4 155457788 155457788 T A PLRG1 3'UTR 0.49 TCGA-A6-2677-01 4 169214963 169214963 G C DDX60 Missense_Mutation p.S286C 0.42 deleterious(0.02) possibly_damaging(0.606) TCGA-A6-2677-01 4 27024546 27024546 C T STIM2 Silent p.D731D 0.32 TCGA-A6-2677-01 4 36310050 36310050 G A DTHD1 Missense_Mutation p.R552H 0.57 tolerated(0.09) benign(0.003) TCGA-A6-2677-01 4 39512328 39512328 T G UGDH Missense_Mutation p.I140L 0.16 tolerated(0.15) benign(0.14) TCGA-A6-2677-01 4 59332 59332 A G ZNF595 Missense_Mutation p.T5A 0.08 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-A6-2677-01 4 79475598 79475598 G T ANXA3 5'UTR 0.45 TCGA-A6-2677-01 4 84376655 84376655 C T HELQ Silent p.Q64Q 0.32 TCGA-A6-2677-01 4 87671731 87671731 T A PTPN13 Missense_Mutation p.L920H 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-A6-2677-01 5 112162834 112162834 C T APC Nonsense_Mutation p.Q480* 0.48 TCGA-A6-2677-01 5 112175752 112175752 T - APC Frame_Shift_Del p.L1488Yfs*19 0.28 TCGA-A6-2677-01 5 137803578 137803578 G A EGR1 Silent p.S480S 0.29 TCGA-A6-2677-01 5 140230054 140230054 G A PCDHA9 Silent p.A658A 0.43 TCGA-A6-2677-01 5 140530309 140530309 C T PCDHB6 Silent p.H157H 0.52 TCGA-A6-2677-01 5 140532010 140532010 G A PCDHB6 Silent p.S724S 0.11 TCGA-A6-2677-01 5 140626727 140626727 C T PCDHB15 Silent p.F527F 0.44 TCGA-A6-2677-01 5 140811041 140811041 G A PCDHGA12 Missense_Mutation p.A239T 0.16 tolerated_low_confidence(0.1) benign(0.07) TCGA-A6-2677-01 5 173428199 173428199 G C C5orf47 Missense_Mutation p.S171T 0.10 tolerated(0.61) benign(0.008) TCGA-A6-2677-01 5 180017772 180017772 G A SCGB3A1 Missense_Mutation p.A40V 0.37 tolerated(0.53) possibly_damaging(0.695) TCGA-A6-2677-01 5 41150110 41150110 T G C6 Missense_Mutation p.K770Q 0.06 tolerated(0.6) benign(0.01) TCGA-A6-2677-01 6 112393121 112393121 C T TUBE1 Missense_Mutation p.R418K 0.35 tolerated(1) benign(0.001) TCGA-A6-2677-01 6 116757778 116757778 G A DSE Missense_Mutation p.R716H 0.35 tolerated_low_confidence(0.39) benign(0.002) TCGA-A6-2677-01 6 126319441 126319441 G A TRMT11 Missense_Mutation p.E123K 0.42 tolerated(0.11) possibly_damaging(0.461) TCGA-A6-2677-01 6 137476133 137476133 C T IL22RA2 Silent p.S139S 0.51 TCGA-A6-2677-01 6 143092519 143092519 C T HIVEP2 Nonsense_Mutation p.W1119* 0.10 TCGA-A6-2677-01 6 152806047 152806047 G A SYNE1 Nonsense_Mutation p.Q370* 0.23 TCGA-A6-2677-01 6 29760312 29760312 G A HLA-V RNA 0.74 TCGA-A6-2677-01 6 32049856 32049856 C T RNA5SP206 5'Flank 0.52 TCGA-A6-2677-01 6 44107273 44107273 C T TMEM63B Silent p.I159I 0.47 TCGA-A6-2677-01 6 46128908 46128908 G C ENPP5 3'UTR 0.38 TCGA-A6-2677-01 6 51890409 51890409 G A PKHD1 Missense_Mutation p.S1400L 0.53 deleterious(0.03) possibly_damaging(0.537) TCGA-A6-2677-01 6 55620351 55620351 G A BMP5 Missense_Mutation p.R449C 0.47 deleterious(0) probably_damaging(0.977) TCGA-A6-2677-01 6 73952250 73952250 C T KHDC1 Silent p.S70S 0.42 TCGA-A6-2677-01 6 87725663 87725663 G A HTR1E Missense_Mutation p.R204Q 0.33 deleterious(0) probably_damaging(0.953) TCGA-A6-2677-01 7 128490500 128490500 G T FLNC Silent p.L1787L 0.31 TCGA-A6-2677-01 7 129122903 129122903 G T STRIP2 Intron 0.45 TCGA-A6-2677-01 7 134927534 134927534 G A STRA8 Nonsense_Mutation p.W87* 0.54 TCGA-A6-2677-01 7 45725776 45725776 C T ADCY1 Silent p.Y763Y 0.49 TCGA-A6-2677-01 7 45956214 45956214 T C IGFBP3 Missense_Mutation p.N234S 0.27 tolerated(0.2) benign(0.167) TCGA-A6-2677-01 7 97369337 97369337 G T TAC1 3'UTR 0.14 TCGA-A6-2677-01 7 99328687 99328687 G A CYP3A7 Missense_Mutation p.R54C 0.53 deleterious(0.02) benign(0.047) TCGA-A6-2677-01 8 113655794 113655794 C A CSMD3 Intron 0.05 TCGA-A6-2677-01 8 139895479 139895479 C A COL22A1 5'UTR 0.35 TCGA-A6-2677-01 8 38928842 38928842 T C ADAM9 Silent p.C539C 0.05 TCGA-A6-2677-01 8 43147741 43147741 C T POTEA RNA 0.47 TCGA-A6-2677-01 8 67066483 67066483 C T TRIM55 Missense_Mutation p.R480W 0.29 deleterious_low_confidence(0.01) benign(0.28) TCGA-A6-2677-01 8 73979544 73979544 A T SBSPON 3'UTR 0.45 TCGA-A6-2677-01 8 77620099 77620099 A G ZFHX4 Missense_Mutation p.K970R 0.12 possibly_damaging(0.486) TCGA-A6-2677-01 9 111617870 111617870 G A ACTL7B Missense_Mutation p.P114L 0.46 deleterious(0) probably_damaging(0.999) TCGA-A6-2677-01 9 131010867 131010867 C T DNM1 Silent p.S637S 0.43 TCGA-A6-2677-01 9 133760160 133760160 C T ABL1 Missense_Mutation p.S847L 0.42 tolerated_low_confidence(0.05) benign(0.032) TCGA-A6-2677-01 9 133911658 133911658 G T LAMC3 Silent p.L305L 0.43 TCGA-A6-2677-01 9 19786271 19786271 G A SLC24A2 Silent p.I198I 0.41 TCGA-A6-2677-01 9 40774157 40774157 C A ZNF658 Missense_Mutation p.R373I 0.51 deleterious(0) benign(0.28) TCGA-A6-2677-01 9 8499754 8499754 T G PTPRD Missense_Mutation p.K739Q 0.29 tolerated(0.23) probably_damaging(0.994) TCGA-A6-2677-01 9 95608904 95608904 C T ZNF484 Missense_Mutation p.C724Y 0.39 deleterious(0) probably_damaging(0.985) TCGA-A6-2677-01 X 103495163 103495163 G T ESX1 Missense_Mutation p.P323T 0.18 tolerated_low_confidence(0.16) unknown(0) TCGA-A6-2677-01 X 105153818 105153818 C T NRK Missense_Mutation p.R730C 0.53 tolerated(0.19) benign(0.002) TCGA-A6-2677-01 X 117043325 117043325 G C KLHL13 Missense_Mutation p.H438Q 0.45 tolerated(0.38) possibly_damaging(0.787) TCGA-A6-2677-01 X 118221452 118221452 A G KIAA1210 Silent p.P1247P 0.58 TCGA-A6-2677-01 X 148693049 148693049 G A TMEM185A Missense_Mutation p.P46S 0.53 deleterious(0) probably_damaging(1) TCGA-A6-2677-01 X 155004034 155004034 C G SPRY3 Missense_Mutation p.C167W 0.08 deleterious(0) probably_damaging(0.997) TCGA-A6-2677-01 X 21675987 21675987 C T KLHL34 5'UTR 0.63 TCGA-A6-2677-01 X 24024791 24024791 C G KLHL15 Missense_Mutation p.G7A 0.40 tolerated(0.1) benign(0.017) TCGA-A6-2677-01 X 38144720 38144720 G A RPGR 3'UTR 0.40 TCGA-A6-2677-01 X 48564664 48564664 C T SUV39H1 Silent p.T279T 0.57 TCGA-A6-2677-01 X 56310886 56310886 G C KLF8 Missense_Mutation p.D347H 0.51 deleterious(0) unknown(0) TCGA-A6-2677-01 X 62857963 62857963 C T ARHGEF9 Missense_Mutation p.R499H 0.54 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-A6-2677-01 X 70344184 70344184 T C MED12 Silent p.P640P 0.41 TCGA-A6-2677-01 X 75651274 75651274 G T MAGEE1 3'UTR 0.50 TCGA-A6-2677-01 X 76938436 76938436 G A ATRX Missense_Mutation p.A771V 0.55 benign(0.022) TCGA-A6-2677-01 X 79278618 79278618 G A TBX22 Missense_Mutation p.G79S 0.45 tolerated(0.85) benign(0.005) TCGA-A6-2681-01 10 114925333 114925333 C T TCF7L2 Missense_Mutation p.R471C 0.47 deleterious(0) probably_damaging(0.944) TCGA-A6-2681-01 10 5925093 5925093 G A ANKRD16 Missense_Mutation p.A242V 0.60 tolerated(0.06) probably_damaging(0.945) TCGA-A6-2681-01 10 95720502 95720502 G A PIPSL RNA 0.20 TCGA-A6-2681-01 10 99342395 99342395 T C ANKRD2 Missense_Mutation p.L290P 0.11 deleterious(0.03) probably_damaging(1) TCGA-A6-2681-01 11 12315604 12315604 G A MICALCL Missense_Mutation p.R209Q 0.41 tolerated(0.64) benign(0.008) TCGA-A6-2681-01 11 132289968 132289968 C A OPCML 3'UTR 0.27 TCGA-A6-2681-01 11 33667582 33667582 G A KIAA1549L Silent p.P1623P 0.29 TCGA-A6-2681-01 11 36248772 36248772 C T LDLRAD3 Missense_Mutation p.R198W 0.32 deleterious(0) probably_damaging(0.999) TCGA-A6-2681-01 11 5443886 5443886 C A OR51Q1 Nonsense_Mutation p.C152* 0.41 TCGA-A6-2681-01 11 55322424 55322424 T G OR4C15 Silent p.L214L 0.25 TCGA-A6-2681-01 11 5968717 5968717 C A OR56A3 Silent p.T47T 0.18 TCGA-A6-2681-01 11 6024078 6024078 G C OR56A4 Missense_Mutation p.L101V 0.40 deleterious(0.03) probably_damaging(0.976) TCGA-A6-2681-01 11 6048011 6048011 C A OR56A1 Missense_Mutation p.Q308H 0.31 tolerated(0.1) probably_damaging(0.986) TCGA-A6-2681-01 11 69625362 69625362 C T FGF3 Missense_Mutation p.R144H 0.31 deleterious(0.05) possibly_damaging(0.88) TCGA-A6-2681-01 11 7111237 7111237 C T RBMXL2 Missense_Mutation p.R296W 0.26 deleterious(0.02) benign(0.016) TCGA-A6-2681-01 11 7111483 7111483 C T RBMXL2 Missense_Mutation p.R378C 0.53 deleterious(0.05) unknown(0) TCGA-A6-2681-01 11 92613994 92613994 C T FAT3 Silent p.C4075C 0.38 TCGA-A6-2681-01 12 108919960 108919960 T G SART3 Silent p.A762A 0.26 TCGA-A6-2681-01 12 130927032 130927032 G C RIMBP2 Missense_Mutation p.H272D 0.36 tolerated(0.57) benign(0.017) TCGA-A6-2681-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.57 deleterious(0) possibly_damaging(0.479) TCGA-A6-2681-01 12 301798 301798 G T SLC6A12 Missense_Mutation p.S516Y 0.38 tolerated(0.11) probably_damaging(0.999) TCGA-A6-2681-01 12 40760847 40760847 G A LRRK2 Missense_Mutation p.R2477Q 0.38 tolerated(0.31) benign(0.002) TCGA-A6-2681-01 12 85521667 85521667 T C LRRIQ1 Silent p.T1355T 0.13 TCGA-A6-2681-01 13 113974661 113974661 C T LAMP1 Missense_Mutation p.T251M 0.30 tolerated(0.24) benign(0.305) TCGA-A6-2681-01 13 26621160 26621160 C T SHISA2 Missense_Mutation p.A127T 0.15 tolerated(0.06) probably_damaging(1) TCGA-A6-2681-01 13 58208474 58208474 G A PCDH17 Silent p.P598P 0.22 TCGA-A6-2681-01 13 70535555 70535555 G A KLHL1 Silent p.S234S 0.50 TCGA-A6-2681-01 13 95104873 95104873 A G DCT Missense_Mutation p.L408P 0.28 deleterious_low_confidence(0) benign(0.165) TCGA-A6-2681-01 13 96361588 96361588 G A DNAJC3 Missense_Mutation p.V64I 0.57 tolerated(0.4) benign(0.034) TCGA-A6-2681-01 14 101349606 101349606 C T RTL1 Missense_Mutation p.R507H 0.26 tolerated(0.13) benign(0.002) TCGA-A6-2681-01 14 22038481 22038481 C T OR10G3 Missense_Mutation p.R132H 0.31 tolerated(0.43) benign(0.003) TCGA-A6-2681-01 14 65246540 65246540 C T SPTB Missense_Mutation p.R1459Q 0.64 tolerated(0.16) benign(0.054) TCGA-A6-2681-01 14 93398898 93398898 G A CHGA Missense_Mutation p.R331Q 0.28 tolerated(0.42) benign(0.009) TCGA-A6-2681-01 14 95921763 95921763 G A SYNE3 Missense_Mutation p.A363V 0.33 tolerated(0.33) benign(0.001) TCGA-A6-2681-01 15 34102809 34102809 G A RYR3 Missense_Mutation p.D3386N 0.83 possibly_damaging(0.862) TCGA-A6-2681-01 15 67358619 67358619 A T SMAD3 Nonsense_Mutation p.K43* 0.58 TCGA-A6-2681-01 15 70349896 70349896 C T TLE3 Missense_Mutation p.A388T 0.58 tolerated(0.09) benign(0.033) TCGA-A6-2681-01 15 79588265 79588265 T A ANKRD34C 3'UTR 0.36 TCGA-A6-2681-01 16 19127369 19127369 G T ITPRIPL2 Missense_Mutation p.G529V 0.31 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-A6-2681-01 16 4164809 4164809 C T ADCY9 Missense_Mutation p.R212Q 0.44 tolerated(0.59) benign(0.001) TCGA-A6-2681-01 16 61851503 61851503 T C CDH8 Missense_Mutation p.D386G 0.25 deleterious(0) possibly_damaging(0.696) TCGA-A6-2681-01 16 71985575 71985575 C T PKD1L3 RNA 0.31 TCGA-A6-2681-01 16 83984799 83984799 C G OSGIN1 Intron 0.10 TCGA-A6-2681-01 17 11532788 11532788 G A DNAH9 Missense_Mutation p.G469S 0.21 probably_damaging(0.982) TCGA-A6-2681-01 17 42992567 42992567 C A GFAP Silent p.A96A 0.67 TCGA-A6-2681-01 17 46868747 46868747 A T TTLL6 Missense_Mutation p.L406Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-A6-2681-01 17 47799954 47799954 C T FAM117A Silent p.T123T 0.57 TCGA-A6-2681-01 17 48268222 48268222 C T COL1A1 Missense_Mutation p.G767S 0.69 possibly_damaging(0.884) TCGA-A6-2681-01 17 51900501 51900501 G A KIF2B Missense_Mutation p.R36H 0.63 deleterious(0.02) probably_damaging(0.998) TCGA-A6-2681-01 17 74901393 74901393 C T MGAT5B Missense_Mutation p.A289V 0.72 tolerated(0.29) benign(0.062) TCGA-A6-2681-01 17 7578496 7578496 A C TP53 Missense_Mutation p.L145R 0.79 deleterious(0) probably_damaging(0.999) TCGA-A6-2681-01 17 8047079 8047079 G C PER1 Silent p.P859P 0.36 TCGA-A6-2681-01 18 44229211 44229211 G A LOXHD1 Missense_Mutation p.T51M 0.62 deleterious(0) probably_damaging(0.968) TCGA-A6-2681-01 19 15636197 15636197 C T CYP4F22 Missense_Mutation p.T17M 0.22 tolerated(0.11) probably_damaging(0.997) TCGA-A6-2681-01 19 17476158 17476158 C T PLVAP Silent p.A372A 0.26 TCGA-A6-2681-01 19 17753741 17753741 C T UNC13A Silent p.S795S 0.41 TCGA-A6-2681-01 19 2289983 2289983 G T LINGO3 3'UTR 0.27 TCGA-A6-2681-01 19 2987121 2987121 G A TLE6 Silent p.P142P 0.30 TCGA-A6-2681-01 19 35850346 35850346 G A FFAR3 Missense_Mutation p.R185Q 0.62 tolerated(0.1) probably_damaging(0.976) TCGA-A6-2681-01 19 4323432 4323432 C T FSD1 Missense_Mutation p.T460M 0.24 tolerated(0.46) benign(0.003) TCGA-A6-2681-01 19 51471342 51471342 C G KLK6 Missense_Mutation p.V7L 0.72 tolerated(0.36) benign(0.006) TCGA-A6-2681-01 19 7585331 7585331 C T ZNF358 Silent p.A401A 0.41 TCGA-A6-2681-01 19 9453589 9453589 A T ZNF559 Missense_Mutation p.T488S 0.16 tolerated(0.27) possibly_damaging(0.511) TCGA-A6-2681-01 1 100681540 100681540 T G DBT Missense_Mutation p.K257N 0.17 deleterious(0.02) benign(0.005) TCGA-A6-2681-01 1 111435127 111435127 T C CD53 Missense_Mutation p.I75T 0.11 deleterious(0) probably_damaging(0.985) TCGA-A6-2681-01 1 116937773 116937773 G T ATP1A1 Missense_Mutation p.G568W 0.08 deleterious(0) probably_damaging(0.99) TCGA-A6-2681-01 1 119427748 119427748 A G TBX15 Silent p.F366F 0.09 TCGA-A6-2681-01 1 147096665 147096665 A T BCL9 Missense_Mutation p.I1396F 0.08 deleterious(0.02) benign(0.015) TCGA-A6-2681-01 1 156879825 156879825 A G PEAR1 Missense_Mutation p.S535G 0.64 tolerated(0.22) benign(0.003) TCGA-A6-2681-01 1 158618343 158618343 G A SPTA1 Missense_Mutation p.R1224W 0.19 deleterious(0) possibly_damaging(0.606) TCGA-A6-2681-01 1 160105259 160105259 C T ATP1A2 Silent p.N717N 0.66 TCGA-A6-2681-01 1 174190232 174190232 G A RABGAP1L Silent p.S87S 0.11 TCGA-A6-2681-01 1 184559925 184559925 G A C1orf21 Missense_Mutation p.G81E 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-A6-2681-01 1 198701620 198701620 C T PTPRC Missense_Mutation p.R693C 0.58 deleterious(0) probably_damaging(1) TCGA-A6-2681-01 1 201822164 201822164 G A IPO9 Missense_Mutation p.R210Q 0.07 deleterious(0.05) possibly_damaging(0.581) TCGA-A6-2681-01 1 205632105 205632105 G A SLC45A3 Missense_Mutation p.R272C 0.20 deleterious(0) probably_damaging(0.967) TCGA-A6-2681-01 1 211749057 211749057 C T SLC30A1 Silent p.V399V 0.26 TCGA-A6-2681-01 1 228520601 228520602 - T OBSCN Frame_Shift_Ins p.S6189Ffs*24 0.13 TCGA-A6-2681-01 1 22902956 22902956 A G EPHA8 Missense_Mutation p.S136G 0.08 tolerated(0.37) benign(0.356) TCGA-A6-2681-01 1 233482242 233482242 T C MLK4 Missense_Mutation p.I287T 0.56 deleterious(0) probably_damaging(1) TCGA-A6-2681-01 1 235969333 235969333 T G LYST Missense_Mutation p.K1035Q 0.08 tolerated_low_confidence(0.11) benign(0.133) TCGA-A6-2681-01 1 2434109 2434109 G A PLCH2 Missense_Mutation p.A1047T 0.19 tolerated_low_confidence(0.15) benign(0.043) TCGA-A6-2681-01 1 247875319 247875319 C T OR6F1 Missense_Mutation p.V247M 0.19 deleterious(0.01) probably_damaging(1) TCGA-A6-2681-01 1 248616651 248616651 G A OR2T2 Missense_Mutation p.V185M 0.21 tolerated(0.16) probably_damaging(0.999) TCGA-A6-2681-01 1 32745477 32745477 T A LCK Missense_Mutation p.N359K 0.44 deleterious(0.02) possibly_damaging(0.729) TCGA-A6-2681-01 1 43851698 43851698 C A MED8 Missense_Mutation p.Q231H 0.42 tolerated(0.21) benign(0.059) TCGA-A6-2681-01 20 13699616 13699616 G A ESF1 Missense_Mutation p.S685L 0.47 tolerated(0.05) benign(0.003) TCGA-A6-2681-01 20 19972886 19972886 G C RIN2 Missense_Mutation p.D764H 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-A6-2681-01 20 34797567 34797567 C T EPB41L1 Missense_Mutation p.T609M 0.58 deleterious(0) probably_damaging(0.999) TCGA-A6-2681-01 20 45130047 45130047 G A ZNF334 Missense_Mutation p.T644I 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-A6-2681-01 20 49510053 49510053 A G ADNP Missense_Mutation p.S400P 0.44 tolerated(0.1) benign(0.027) TCGA-A6-2681-01 20 57415374 57415374 C T RP4-806M20.3 5'Flank 0.43 TCGA-A6-2681-01 21 27066156 27066156 A G JAM2 Silent p.E110E 0.09 TCGA-A6-2681-01 21 32598232 32598232 G A TIAM1 Missense_Mutation p.T540I 0.31 deleterious(0) probably_damaging(1) TCGA-A6-2681-01 21 39775557 39775557 C T ERG Missense_Mutation p.V162I 0.33 tolerated(0.59) benign(0.13) TCGA-A6-2681-01 22 39411666 39411666 C T APOBEC3C Silent p.N28N 0.65 TCGA-A6-2681-01 2 120204401 120204401 G A SCTR Silent p.F358F 0.71 TCGA-A6-2681-01 2 131522719 131522719 T A AMER3 3'UTR 0.21 TCGA-A6-2681-01 2 169487503 169487503 T G CERS6 Missense_Mutation p.F139C 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-A6-2681-01 2 189162220 189162220 T G GULP1 Intron 0.08 TCGA-A6-2681-01 2 238903387 238903387 T C UBE2F Silent p.C50C 0.12 TCGA-A6-2681-01 2 27282118 27282118 C A AGBL5 Silent p.G645G 0.14 TCGA-A6-2681-01 2 42180379 42180379 G T C2orf91 Missense_Mutation p.S19R 0.53 tolerated_low_confidence(0.11) benign(0) TCGA-A6-2681-01 2 55490840 55490840 G T MTIF2 Missense_Mutation p.P52H 0.42 tolerated(0.55) benign(0.401) TCGA-A6-2681-01 3 111831941 111831941 A G C3orf52 Intron 0.19 TCGA-A6-2681-01 3 112358352 112358352 G A CCDC80 Missense_Mutation p.S134L 0.50 deleterious(0.03) possibly_damaging(0.602) TCGA-A6-2681-01 3 121341219 121341219 G A FBXO40 Missense_Mutation p.G315R 0.52 deleterious(0.03) probably_damaging(0.991) TCGA-A6-2681-01 3 125731518 125731518 C T SLC41A3 Missense_Mutation p.V349I 0.16 tolerated(0.19) benign(0.103) TCGA-A6-2681-01 3 130293044 130293044 T A COL6A6 Missense_Mutation p.F1074L 0.38 tolerated(0.3) possibly_damaging(0.594) TCGA-A6-2681-01 3 16419430 16419430 A G RFTN1 Silent p.T207T 0.29 TCGA-A6-2681-01 3 169486049 169486049 G A ACTRT3 Missense_Mutation p.P97L 0.41 deleterious(0.01) possibly_damaging(0.81) TCGA-A6-2681-01 3 172048344 172048344 G C FNDC3B Missense_Mutation p.E465Q 0.13 tolerated(0.21) possibly_damaging(0.461) TCGA-A6-2681-01 3 2908489 2908489 C T CNTN4 Missense_Mutation p.R170C 0.29 deleterious(0) probably_damaging(0.998) TCGA-A6-2681-01 3 42201956 42201956 T G TRAK1 Intron 0.26 TCGA-A6-2681-01 3 42794147 42794147 G A CCDC13 Missense_Mutation p.R145W 0.46 deleterious(0) probably_damaging(1) TCGA-A6-2681-01 4 114251506 114251506 C T ANK2 Missense_Mutation p.T1002M 0.33 probably_damaging(0.948) TCGA-A6-2681-01 4 114274219 114274219 C A ANK2 Missense_Mutation p.T1482K 0.44 possibly_damaging(0.851) TCGA-A6-2681-01 4 118975091 118975091 G T NDST3 Missense_Mutation p.R9I 0.37 deleterious_low_confidence(0.01) benign(0.203) TCGA-A6-2681-01 4 120527997 120527997 C A PDE5A Missense_Mutation p.R203L 0.42 deleterious(0) possibly_damaging(0.46) TCGA-A6-2681-01 4 184367377 184367377 G T CDKN2AIP Silent p.G180G 0.49 TCGA-A6-2681-01 4 25678243 25678243 G T SLC34A2 Nonsense_Mutation p.E649* 0.25 TCGA-A6-2681-01 4 86921883 86921884 - G ARHGAP24 3'UTR 0.19 TCGA-A6-2681-01 4 93511362 93511362 A G GRID2 Missense_Mutation p.I57V 0.40 tolerated(0.16) possibly_damaging(0.678) TCGA-A6-2681-01 5 112151261 112151261 C T APC Nonsense_Mutation p.R302* 0.38 TCGA-A6-2681-01 5 112175676 112175677 AG - APC Frame_Shift_Del p.S1465Wfs*3 0.30 TCGA-A6-2681-01 5 122923798 122923798 A G CSNK1G3 Missense_Mutation p.H237R 0.42 deleterious(0) probably_damaging(0.987) TCGA-A6-2681-01 5 134113293 134113293 A C DDX46 Missense_Mutation p.K215Q 0.15 tolerated(0.18) benign(0.099) TCGA-A6-2681-01 5 140554775 140554775 T A PCDHB7 Missense_Mutation p.F787I 0.16 deleterious_low_confidence(0.01) benign(0.025) TCGA-A6-2681-01 5 140554777 140554777 T A PCDHB7 Missense_Mutation p.F787L 0.16 tolerated_low_confidence(0.18) benign(0.01) TCGA-A6-2681-01 5 140595880 140595880 G A PCDHB13 Missense_Mutation p.E729K 0.33 deleterious_low_confidence(0.02) benign(0.024) TCGA-A6-2681-01 5 140604395 140604395 C A PCDHB14 Missense_Mutation p.L440M 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.866) TCGA-A6-2681-01 5 1443253 1443253 C A SLC6A3 Missense_Mutation p.E20D 0.36 tolerated(0.05) benign(0.045) TCGA-A6-2681-01 5 148586579 148586579 G A ABLIM3 Missense_Mutation p.G153R 0.41 deleterious(0) probably_damaging(0.995) TCGA-A6-2681-01 5 36142688 36142688 C A LMBRD2 Missense_Mutation p.R63L 0.22 deleterious(0.01) possibly_damaging(0.758) TCGA-A6-2681-01 5 5209350 5209350 C T ADAMTS16 Silent p.D532D 0.42 TCGA-A6-2681-01 5 55204179 55204179 A G IL31RA Missense_Mutation p.R481G 0.09 deleterious(0) probably_damaging(0.988) TCGA-A6-2681-01 5 72798397 72798397 G C BTF3 Missense_Mutation p.G96R 0.36 deleterious(0.04) benign(0.248) TCGA-A6-2681-01 6 117888134 117888134 C T GOPC Missense_Mutation p.V381I 0.53 tolerated(0.2) possibly_damaging(0.536) TCGA-A6-2681-01 6 133065398 133065398 G T VNN2 3'UTR 0.43 TCGA-A6-2681-01 6 149916364 149916364 C T KATNA1 Silent p.A428A 0.24 TCGA-A6-2681-01 6 155757581 155757581 C T NOX3 Missense_Mutation p.V257M 0.42 tolerated(0.19) benign(0.013) TCGA-A6-2681-01 6 29342522 29342522 C T OR12D3 Silent p.P181P 0.35 TCGA-A6-2681-01 6 30036367 30036367 G A PPP1R11 Missense_Mutation p.E24K 0.27 tolerated(0.37) probably_damaging(0.994) TCGA-A6-2681-01 6 40360112 40360112 G A LRFN2 Missense_Mutation p.P647L 0.28 tolerated(0.2) benign(0.017) TCGA-A6-2681-01 6 75968537 75968537 G A TMEM30A Missense_Mutation p.P284L 0.08 tolerated(0.14) benign(0.16) TCGA-A6-2681-01 7 116599514 116599514 T C ST7-OT4 3'UTR 0.40 TCGA-A6-2681-01 7 121680959 121680959 G T PTPRZ1 Silent p.L1909L 0.36 TCGA-A6-2681-01 7 138444577 138444577 G A ATP6V0A4 Missense_Mutation p.R187W 0.16 deleterious(0) probably_damaging(0.975) TCGA-A6-2681-01 7 151267313 151267313 T C PRKAG2 Splice_Site p.X351_splice 0.13 TCGA-A6-2681-01 7 1784439 1784439 G A ELFN1 Silent p.E69E 0.28 TCGA-A6-2681-01 7 4152926 4152926 G A SDK1 Missense_Mutation p.R1147Q 0.26 deleterious(0.03) probably_damaging(1) TCGA-A6-2681-01 7 44027839 44027839 T G POLR2J4 RNA 0.30 TCGA-A6-2681-01 7 45743024 45743024 G T ADCY1 Missense_Mutation p.R835L 0.18 deleterious(0) probably_damaging(0.999) TCGA-A6-2681-01 7 75104127 75104127 C T POM121C 5'UTR 0.32 TCGA-A6-2681-01 7 87763645 87763645 T A ADAM22 Missense_Mutation p.F360Y 0.33 tolerated(1) benign(0.023) TCGA-A6-2681-01 7 92731966 92731966 G T SAMD9 Missense_Mutation p.L1149I 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-2681-01 8 110980535 110980535 C A KCNV1 Missense_Mutation p.D429Y 0.40 deleterious(0) probably_damaging(0.978) TCGA-A6-2681-01 8 144734366 144734366 C G ZNF623 3'UTR 0.35 TCGA-A6-2681-01 8 145535061 145535061 A G HSF1 Missense_Mutation p.R207G 0.08 deleterious(0) possibly_damaging(0.889) TCGA-A6-2681-01 8 42716923 42716923 C A RNF170 Missense_Mutation p.D158Y 0.31 deleterious(0.01) possibly_damaging(0.535) TCGA-A6-2681-01 9 111674597 111674597 C T IKBKAP Missense_Mutation p.R379Q 0.34 deleterious(0.04) probably_damaging(0.912) TCGA-A6-2681-01 9 114151986 114151986 A T KIAA0368 Missense_Mutation p.F1277L 0.44 tolerated(0.06) possibly_damaging(0.635) TCGA-A6-2681-01 9 115946668 115946668 T C FKBP15 Silent p.L540L 0.44 TCGA-A6-2681-01 9 135447857 135447857 G A C9orf171 Missense_Mutation p.R308H 0.33 deleterious(0) possibly_damaging(0.903) TCGA-A6-2681-01 9 137620533 137620533 C T COL5A1 Silent p.G268G 0.39 TCGA-A6-2681-01 9 140127715 140127715 C T SLC34A3 Silent p.V205V 0.20 TCGA-A6-2681-01 9 17789417 17789417 C T SH3GL2 Missense_Mutation p.R165C 0.43 deleterious(0) probably_damaging(0.984) TCGA-A6-2681-01 9 93376141 93376141 C T DIRAS2 5'UTR 0.25 TCGA-A6-2681-01 X 107334835 107334835 A T PSMD10 5'UTR 0.23 TCGA-A6-2681-01 X 123615691 123615691 G A TENM1 Silent p.S1280S 0.27 TCGA-A6-2681-01 X 135750174 135750174 T A ARHGEF6 3'UTR 0.24 TCGA-A6-2681-01 X 140785767 140785767 A G SPANXD Missense_Mutation p.I50T 0.46 tolerated(0.26) benign(0.006) TCGA-A6-2681-01 X 140995386 140995386 G - MAGEC1 Frame_Shift_Del p.E734Rfs*11 0.32 TCGA-A6-2681-01 X 150345167 150345167 G T GPR50 5'UTR 0.44 TCGA-A6-2681-01 X 152612978 152612978 G A ZNF275 Missense_Mutation p.G279R 0.29 deleterious(0.03) probably_damaging(0.993) TCGA-A6-2681-01 X 152773999 152773999 G A BGN 3'UTR 0.60 TCGA-A6-2681-01 X 152991142 152991142 G A ABCD1 Missense_Mutation p.A141T 0.42 deleterious(0) probably_damaging(0.991) TCGA-A6-2681-01 X 153222412 153222412 A G HCFC1 Missense_Mutation p.V818A 0.20 deleterious(0) probably_damaging(0.966) TCGA-A6-2681-01 X 153578215 153578215 C T FLNA Missense_Mutation p.V2452M 0.14 deleterious(0.02) possibly_damaging(0.853) TCGA-A6-2681-01 X 37027803 37027803 G A FAM47C Silent p.P440P 0.38 TCGA-A6-2681-01 X 51075948 51075948 G A NUDT10 Missense_Mutation p.R44H 0.33 tolerated(0.11) benign(0.279) TCGA-A6-2681-01 X 5950789 5950789 C A NLGN4X Intron 0.50 TCGA-A6-2681-01 X 63411729 63411729 C A AMER1 Nonsense_Mutation p.E480* 0.27 TCGA-A6-2681-01 X 73812374 73812374 G A RLIM Missense_Mutation p.T259M 0.41 tolerated(0.09) unknown(0) TCGA-A6-2681-01 X 75004188 75004188 C T MAGEE2 Missense_Mutation p.M233I 0.14 deleterious(0) probably_damaging(0.968) TCGA-A6-2681-01 X 8433419 8433419 C T VCX3B 5'UTR 0.23 TCGA-A6-2684-01 10 103543094 103543094 C T NPM3 Silent p.T18T 0.34 TCGA-A6-2684-01 10 114186585 114186585 G A ACSL5 Missense_Mutation p.G683R 0.39 deleterious(0) probably_damaging(0.988) TCGA-A6-2684-01 10 126631333 126631333 C T ZRANB1 Missense_Mutation p.H91Y 0.39 deleterious(0.03) benign(0.081) TCGA-A6-2684-01 10 134671214 134671214 G A TTC40 Silent p.A1818A 0.30 TCGA-A6-2684-01 10 22657424 22657424 C T SPAG6 Missense_Mutation p.R97C 0.24 deleterious(0.03) benign(0.021) TCGA-A6-2684-01 10 35928212 35928212 C T FZD8 3'UTR 0.20 TCGA-A6-2684-01 10 37505322 37505322 G T ANKRD30A Missense_Mutation p.R972I 0.02 deleterious(0) possibly_damaging(0.766) TCGA-A6-2684-01 10 69991168 69991168 G A ATOH7 Silent p.I89I 0.28 TCGA-A6-2684-01 11 123814011 123814011 G A OR6T1 Missense_Mutation p.R179C 0.26 tolerated(1) benign(0) TCGA-A6-2684-01 11 18637320 18637320 C T SPTY2D1 Missense_Mutation p.M167I 0.30 deleterious(0.01) benign(0.019) TCGA-A6-2684-01 11 55563449 55563449 C A OR5D14 Missense_Mutation p.Q140K 0.32 deleterious(0.04) benign(0.04) TCGA-A6-2684-01 11 64597252 64597252 G A CDC42BPG Missense_Mutation p.R1220C 0.32 tolerated(0.17) probably_damaging(1) TCGA-A6-2684-01 11 71850838 71850838 A G FOLR3 Missense_Mutation p.N276S 0.40 tolerated(1) benign(0.001) TCGA-A6-2684-01 12 100433542 100433542 A T UHRF1BP1L Missense_Mutation p.N1369K 0.23 tolerated(0.9) benign(0.028) TCGA-A6-2684-01 12 108920247 108920247 C T SART3 Missense_Mutation p.A667T 0.29 tolerated(0.57) benign(0.002) TCGA-A6-2684-01 12 111785859 111785859 G A CUX2 Silent p.S1397S 0.27 TCGA-A6-2684-01 12 112888195 112888195 T C PTPN11 Missense_Mutation p.F71L 0.32 deleterious(0) probably_damaging(0.963) TCGA-A6-2684-01 12 115120880 115120880 G - TBX3 Frame_Shift_Del p.A43Rfs*2 0.21 TCGA-A6-2684-01 12 117768733 117768733 G A NOS1 Missense_Mutation p.R48C 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-2684-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.30 deleterious(0) benign(0.361) TCGA-A6-2684-01 12 48372074 48372074 C T COL2A1 Silent p.S1001S 0.40 TCGA-A6-2684-01 12 6058079 6058079 C T VWF 3'UTR 0.42 TCGA-A6-2684-01 13 33095543 33095543 G C N4BP2L2 Missense_Mutation p.T77S 0.30 deleterious(0) probably_damaging(0.996) TCGA-A6-2684-01 14 45432848 45432848 C A FAM179B Missense_Mutation p.F408L 0.35 deleterious(0) probably_damaging(0.998) TCGA-A6-2684-01 14 52174925 52174925 G A FRMD6 Missense_Mutation p.A230T 0.37 tolerated(0.1) benign(0.038) TCGA-A6-2684-01 14 77685277 77685277 G A TMEM63C Missense_Mutation p.V41M 0.24 deleterious(0) probably_damaging(1) TCGA-A6-2684-01 14 94160687 94160687 G C UNC79 Missense_Mutation p.E2355Q 0.20 deleterious(0.01) benign(0.024) TCGA-A6-2684-01 15 101609039 101609039 C A LRRK1 Missense_Mutation p.R2012S 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-2684-01 15 28231750 28231750 C T OCA2 Missense_Mutation p.D408N 0.24 deleterious(0) probably_damaging(0.982) TCGA-A6-2684-01 15 31197420 31197420 A G FAN1 Missense_Mutation p.K185R 0.34 tolerated(0.55) benign(0) TCGA-A6-2684-01 15 52100643 52100643 C T TMOD2 Nonsense_Mutation p.R350* 0.31 TCGA-A6-2684-01 15 57565418 57565418 C T TCF12 Nonsense_Mutation p.Q646* 0.32 TCGA-A6-2684-01 15 88476308 88476308 G A NTRK3 Silent p.G608G 0.33 TCGA-A6-2684-01 16 3632599 3632599 G A SLX4 Missense_Mutation p.A1750V 0.35 tolerated(0.21) benign(0.037) TCGA-A6-2684-01 16 55358898 55358898 C T IRX6 5'UTR 0.29 TCGA-A6-2684-01 16 65038746 65038746 G A CDH11 Silent p.A9A 0.33 TCGA-A6-2684-01 16 67006817 67006817 G A CES3 Silent p.L527L 0.31 TCGA-A6-2684-01 16 86602264 86602264 G A FOXC2 Silent p.A441A 0.25 TCGA-A6-2684-01 16 88893137 88893137 G A GALNS Missense_Mutation p.T371I 0.39 tolerated(0.21) benign(0.016) TCGA-A6-2684-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.43 deleterious(0) probably_damaging(0.998) TCGA-A6-2684-01 17 79202888 79202888 C A ENTHD2 Missense_Mutation p.G473V 0.50 deleterious(0) probably_damaging(0.999) TCGA-A6-2684-01 17 79580442 79580442 G A NPLOC4 Silent p.G96G 0.43 TCGA-A6-2684-01 18 3457596 3457597 - CCGT TGIF1 Frame_Shift_Ins p.S291Vfs*61 0.47 TCGA-A6-2684-01 19 11319405 11319405 C T DOCK6 Missense_Mutation p.G1682E 0.25 deleterious(0) probably_damaging(0.95) TCGA-A6-2684-01 19 1360902 1360902 G A MUM1 Missense_Mutation p.G329R 0.23 tolerated(0.59) probably_damaging(0.991) TCGA-A6-2684-01 19 16987020 16987020 C T SIN3B Missense_Mutation p.A948V 0.42 tolerated(0.11) benign(0.115) TCGA-A6-2684-01 19 2042522 2042522 C T MKNK2 Splice_Site p.X219_splice 0.40 TCGA-A6-2684-01 19 31039670 31039670 G A ZNF536 Silent p.A1048A 0.22 TCGA-A6-2684-01 19 36043993 36043993 C T ATP4A Silent p.A899A 0.30 TCGA-A6-2684-01 19 37647180 37647180 G A CTC-454I21.3 Silent p.N38N 0.25 TCGA-A6-2684-01 19 38981328 38981328 G A RYR1 Missense_Mutation p.R2028Q 0.26 benign(0.014) TCGA-A6-2684-01 19 40788540 40788540 T C AKT2 Intron 0.44 TCGA-A6-2684-01 19 45912768 45912768 C T ERCC1 3'Flank 0.33 TCGA-A6-2684-01 19 46281446 46281446 C T DMPK Missense_Mutation p.R215H 0.24 tolerated(0.32) possibly_damaging(0.838) TCGA-A6-2684-01 19 46308218 46308218 G A RSPH6A Silent p.G315G 0.22 TCGA-A6-2684-01 19 46388773 46388773 C T IRF2BP1 Missense_Mutation p.G87E 0.36 tolerated(1) probably_damaging(0.931) TCGA-A6-2684-01 19 5245976 5245976 C T PTPRS Missense_Mutation p.V267M 0.30 deleterious(0) probably_damaging(0.943) TCGA-A6-2684-01 19 5783556 5783556 C A PRR22 Silent p.L234L 0.35 TCGA-A6-2684-01 1 118035868 118035868 A G MAN1A2 Missense_Mutation p.Y423C 0.28 deleterious(0.03) probably_damaging(0.95) TCGA-A6-2684-01 1 150933366 150933366 C T SETDB1 Missense_Mutation p.T943I 0.29 tolerated(0.11) benign(0.052) TCGA-A6-2684-01 1 154140254 154140254 G A TPM3 3'UTR 0.46 TCGA-A6-2684-01 1 16464352 16464352 C G EPHA2 Missense_Mutation p.Q436H 0.23 deleterious(0.05) benign(0) TCGA-A6-2684-01 1 173826784 173826784 A C DARS2 Missense_Mutation p.K627Q 0.09 tolerated(0.14) benign(0.04) TCGA-A6-2684-01 1 205693079 205693079 G C NUCKS1 Silent p.T68T 0.36 TCGA-A6-2684-01 1 22165547 22165547 G A HSPG2 Silent p.H3307H 0.43 TCGA-A6-2684-01 1 222802142 222802142 A T MIA3 Missense_Mutation p.D527V 0.26 deleterious(0) possibly_damaging(0.77) TCGA-A6-2684-01 1 240371640 240371640 G A FMN2 Silent p.P1176P 0.25 TCGA-A6-2684-01 1 43203959 43203959 C T CLDN19 Silent p.S138S 0.40 TCGA-A6-2684-01 1 46088305 46088305 G A CCDC17 Missense_Mutation p.R259W 0.32 deleterious(0.02) benign(0.187) TCGA-A6-2684-01 1 91784899 91784899 C T HFM1 Silent p.L877L 0.30 TCGA-A6-2684-01 20 33879614 33879614 A G FAM83C Missense_Mutation p.L165P 0.07 deleterious(0) probably_damaging(1) TCGA-A6-2684-01 20 36841432 36841432 G A KIAA1755 3'UTR 0.21 TCGA-A6-2684-01 20 60348210 60348210 G A CDH4 Missense_Mutation p.R183H 0.24 deleterious(0) probably_damaging(0.953) TCGA-A6-2684-01 21 32508254 32508254 A G TIAM1 Missense_Mutation p.F1294L 0.50 deleterious(0) possibly_damaging(0.732) TCGA-A6-2684-01 22 18385451 18385451 C T MICAL3 Missense_Mutation p.V179I 0.05 probably_damaging(0.993) TCGA-A6-2684-01 22 20939152 20939152 C T MED15 Missense_Mutation p.P605L 0.38 deleterious(0.03) probably_damaging(0.997) TCGA-A6-2684-01 22 26423554 26423554 C T MYO18B Silent p.G2538G 0.30 TCGA-A6-2684-01 22 26688283 26688283 G A SEZ6L Intron 0.61 TCGA-A6-2684-01 22 26937244 26937244 C T TPST2 Missense_Mutation p.R118H 0.29 tolerated(0.13) benign(0.009) TCGA-A6-2684-01 22 40661750 40661750 G T TNRC6B Missense_Mutation p.V506F 0.29 tolerated(0.07) probably_damaging(0.934) TCGA-A6-2684-01 2 166929997 166929997 G A SCN1A Silent p.D45D 0.31 TCGA-A6-2684-01 2 179296802 179296802 G T PRKRA 3'UTR 0.09 TCGA-A6-2684-01 2 179427743 179427743 C T TTN Missense_Mutation p.E27706K 0.35 TCGA-A6-2684-01 2 196661439 196661439 C A DNAH7 Missense_Mutation p.S3459I 0.36 tolerated(0.12) benign(0.278) TCGA-A6-2684-01 2 202514862 202514862 C T MPP4 Missense_Mutation p.E470K 0.31 deleterious(0.02) probably_damaging(1) TCGA-A6-2684-01 2 230231641 230231641 G A DNER Missense_Mutation p.R684C 0.35 deleterious(0) probably_damaging(0.939) TCGA-A6-2684-01 2 25361994 25361994 G A EFR3B Missense_Mutation p.A597T 0.24 deleterious(0.01) possibly_damaging(0.799) TCGA-A6-2684-01 2 27844257 27844257 C T ZNF512 Nonsense_Mutation p.Q545* 0.33 TCGA-A6-2684-01 2 40656665 40656665 C T SLC8A1 Silent p.A252A 0.39 TCGA-A6-2684-01 2 46707694 46707694 G A TMEM247 Missense_Mutation p.A90T 0.38 tolerated(0.6) benign(0.003) TCGA-A6-2684-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-A6-2684-01 2 72968570 72968570 G A EXOC6B Missense_Mutation p.R48C 0.28 deleterious(0.01) benign(0.405) TCGA-A6-2684-01 2 85622740 85622740 G A CAPG Missense_Mutation p.A301V 0.33 deleterious(0) possibly_damaging(0.836) TCGA-A6-2684-01 2 85770139 85770139 G A MAT2A Missense_Mutation p.R356H 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-A6-2684-01 2 88874419 88874419 G T EIF2AK3 Missense_Mutation p.T861N 0.04 tolerated(0.14) benign(0.23) TCGA-A6-2684-01 3 125695931 125695931 G A ROPN1B Missense_Mutation p.V107M 0.24 deleterious(0.01) possibly_damaging(0.807) TCGA-A6-2684-01 3 126733643 126733643 G A PLXNA1 Missense_Mutation p.R949H 0.24 deleterious(0.03) possibly_damaging(0.875) TCGA-A6-2684-01 3 129251490 129251490 G A RHO Missense_Mutation p.V271M 0.37 tolerated(0.11) probably_damaging(0.999) TCGA-A6-2684-01 3 129252595 129252595 G A RHO 3'UTR 0.11 TCGA-A6-2684-01 3 165504083 165504083 G C BCHE Missense_Mutation p.Q512E 0.26 tolerated(1) benign(0.006) TCGA-A6-2684-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.33 tolerated(0.21) possibly_damaging(0.893) TCGA-A6-2684-01 3 184049551 184049551 G A EIF4G1 Silent p.T1484T 0.31 TCGA-A6-2684-01 3 97669669 97669669 G C MINA Missense_Mutation p.D283E 0.30 tolerated(0.17) benign(0.023) TCGA-A6-2684-01 4 110791018 110791018 G A LRIT3 Silent p.P371P 0.36 TCGA-A6-2684-01 4 146686151 146686151 G A ZNF827 Silent p.T1073T 0.07 TCGA-A6-2684-01 4 69111411 69111411 C T TMPRSS11B 5'UTR 0.26 TCGA-A6-2684-01 4 76871704 76871704 A G SDAD1 3'UTR 0.61 TCGA-A6-2684-01 5 112163696 112163697 - A APC Frame_Shift_Ins p.Q541Tfs*19 0.36 TCGA-A6-2684-01 5 118968553 118968553 G A FAM170A Missense_Mutation p.V61I 0.40 tolerated(0.19) benign(0.085) TCGA-A6-2684-01 5 140215412 140215412 G A PCDHA7 Missense_Mutation p.A482T 0.31 deleterious_low_confidence(0.02) benign(0.412) TCGA-A6-2684-01 5 140256600 140256600 G A PCDHA12 Missense_Mutation p.G515S 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-2684-01 5 140537168 140537168 G A PCDHB17 Missense_Mutation p.R531H 0.32 tolerated_low_confidence(0.2) benign(0.067) TCGA-A6-2684-01 5 149213249 149213249 G A PPARGC1B Missense_Mutation p.R538Q 0.30 tolerated(0.59) benign(0.005) TCGA-A6-2684-01 5 156769766 156769766 C T FNDC9 3'UTR 0.40 TCGA-A6-2684-01 5 169309720 169309720 C A FAM196B Nonsense_Mutation p.E395* 0.35 TCGA-A6-2684-01 5 169469096 169469096 C T DOCK2 Missense_Mutation p.T1279M 0.28 tolerated(0.09) benign(0.009) TCGA-A6-2684-01 5 38918992 38918992 T C OSMR Silent p.V471V 0.27 TCGA-A6-2684-01 5 7832128 7832128 C T C5orf49 Silent p.P93P 0.33 TCGA-A6-2684-01 6 125550343 125550343 G C TPD52L1 Missense_Mutation p.G72A 0.34 deleterious(0) probably_damaging(1) TCGA-A6-2684-01 6 43221305 43221305 G A TTBK1 Splice_Site p.X111_splice 0.19 TCGA-A6-2684-01 7 100732480 100732480 G A TRIM56 Silent p.K629K 0.15 TCGA-A6-2684-01 7 141631568 141631568 C T CLEC5A Missense_Mutation p.R135H 0.36 tolerated(0.32) benign(0.001) TCGA-A6-2684-01 7 21818697 21818697 C G DNAH11 Missense_Mutation p.T3160S 0.38 benign(0.009) TCGA-A6-2684-01 7 2314799 2314799 G A SNX8 Silent p.H122H 0.31 TCGA-A6-2684-01 7 63529377 63529377 G A ZNF727 Missense_Mutation p.G38R 0.38 tolerated(1) benign(0.003) TCGA-A6-2684-01 8 123965501 123965501 G A ZHX2 Missense_Mutation p.R584Q 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-A6-2684-01 8 133836255 133836255 C T PHF20L1 Missense_Mutation p.S529L 0.27 tolerated(0.4) benign(0) TCGA-A6-2684-01 8 25744344 25744344 G A EBF2 Silent p.G312G 0.41 TCGA-A6-2684-01 8 3266999 3266999 C A CSMD1 Missense_Mutation p.V564F 0.30 benign(0.185) TCGA-A6-2684-01 8 95143155 95143155 G A CDH17 Missense_Mutation p.R745C 0.23 deleterious(0.03) possibly_damaging(0.582) TCGA-A6-2684-01 9 12775919 12775919 T A LURAP1L Missense_Mutation p.L69M 0.31 tolerated(0.09) benign(0.256) TCGA-A6-2684-01 9 22451528 22451528 A T DMRTA1 Missense_Mutation p.N378I 0.25 tolerated(0.45) benign(0.017) TCGA-A6-2684-01 9 2718773 2718773 C T KCNV2 Missense_Mutation p.P345L 0.35 deleterious(0) probably_damaging(1) TCGA-A6-2684-01 9 33166813 33166813 C T B4GALT1 Missense_Mutation p.V119M 0.38 tolerated(0.13) benign(0.003) TCGA-A6-2684-01 X 119744899 119744899 T C MCTS1 Missense_Mutation p.C145R 0.23 deleterious(0) benign(0.29) TCGA-A6-2684-01 X 140270858 140270858 C T LDOC1 Missense_Mutation p.D117N 0.19 tolerated(0.77) benign(0.018) TCGA-A6-2684-01 X 15266936 15266936 A G ASB9 Silent p.A230A 0.23 TCGA-A6-2684-01 X 152915905 152915905 G A DUSP9 3'UTR 0.27 TCGA-A6-2684-01 X 15721148 15721148 C T CA5BP1 RNA 0.30 TCGA-A6-2684-01 X 21674244 21674244 G A KLHL34 Missense_Mutation p.R555W 0.27 deleterious(0) possibly_damaging(0.776) TCGA-A6-2684-01 X 34675106 34675106 G A TMEM47 Missense_Mutation p.S14L 0.22 tolerated(0.35) benign(0.037) TCGA-A6-2684-01 X 49840454 49840454 G A CLCN5 Silent p.S140S 0.19 TCGA-A6-2684-01 X 51238820 51238820 C T NUDT11 Silent p.S159S 0.26 TCGA-A6-2684-01 X 54978347 54978347 G A PFKFB1 Silent p.R279R 0.25 TCGA-A6-2684-01 X 57618959 57618959 G A ZXDB Missense_Mutation p.G160S 0.17 tolerated(0.25) benign(0.008) TCGA-A6-2684-01 X 69283646 69283646 G A OTUD6A 3'UTR 0.27 TCGA-A6-2684-01 X 8138079 8138079 G A VCX2 Silent p.T138T 0.21 TCGA-A6-2684-01 X 8767028 8767028 C A FAM9A Missense_Mutation p.A67S 0.21 tolerated_low_confidence(0.13) probably_damaging(0.923) TCGA-A6-2684-01 X 91873350 91873350 G T PCDH11X Missense_Mutation p.C1152F 0.29 deleterious(0) probably_damaging(0.999) TCGA-A6-2684-01 X 9862912 9862912 C T SHROOM2 Missense_Mutation p.R322C 0.23 deleterious(0) probably_damaging(0.93) TCGA-A6-2685-01 10 134523956 134523956 G A INPP5A Missense_Mutation p.D215N 0.20 tolerated(0.53) benign(0.173) TCGA-A6-2685-01 10 134999521 134999521 C T KNDC1 Silent p.N223N 0.26 TCGA-A6-2685-01 10 13698727 13698727 G C FRMD4A Missense_Mutation p.D954E 0.17 tolerated(0.06) benign(0.007) TCGA-A6-2685-01 10 33619633 33619634 - A NRP1 Intron 0.20 TCGA-A6-2685-01 10 75565484 75565484 C T NDST2 Missense_Mutation p.R536Q 0.10 deleterious(0.01) probably_damaging(0.946) TCGA-A6-2685-01 11 113651063 113651063 C T CLDN25 Silent p.L182L 0.18 TCGA-A6-2685-01 11 126176467 126176467 G T DCPS Silent p.V68V 0.21 TCGA-A6-2685-01 11 66332249 66332249 G C CTSF Silent p.G398G 0.22 TCGA-A6-2685-01 11 76982184 76982184 C A GDPD4 Nonsense_Mutation p.E131* 0.19 TCGA-A6-2685-01 12 125292417 125292417 C A SCARB1 Missense_Mutation p.R300L 0.50 deleterious(0) probably_damaging(0.995) TCGA-A6-2685-01 12 21721886 21721886 G T GYS2 Silent p.R246R 0.22 TCGA-A6-2685-01 12 25380276 25380276 T C KRAS Missense_Mutation p.Q61R 0.36 tolerated(0.06) benign(0.374) TCGA-A6-2685-01 12 49952347 49952347 G A MCRS1 3'Flank 0.24 TCGA-A6-2685-01 13 50265561 50265561 G C EBPL 5'UTR 0.12 TCGA-A6-2685-01 14 101490146 101490146 G A MIR299 RNA 0.19 TCGA-A6-2685-01 16 48121992 48121992 C A ABCC12 Missense_Mutation p.K1160N 0.19 deleterious(0) probably_damaging(1) TCGA-A6-2685-01 16 89960264 89960264 G A TCF25 Missense_Mutation p.V276M 0.16 deleterious(0.05) possibly_damaging(0.701) TCGA-A6-2685-01 17 27282988 27282988 T C SEZ6 Missense_Mutation p.R993G 0.08 tolerated_low_confidence(0.26) benign(0.002) TCGA-A6-2685-01 17 42744711 42744711 T C C17orf104 Missense_Mutation p.W478R 0.49 deleterious(0) probably_damaging(1) TCGA-A6-2685-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.29 TCGA-A6-2685-01 17 80231264 80231264 G T CSNK1D 5'UTR 0.40 TCGA-A6-2685-01 19 14675931 14675931 C T TECR Silent p.P220P 0.17 TCGA-A6-2685-01 19 15132676 15132676 G A CCDC105 Missense_Mutation p.R399H 0.28 deleterious(0) probably_damaging(0.984) TCGA-A6-2685-01 19 48800887 48800887 G C CCDC114 Missense_Mutation p.P477R 0.22 deleterious(0) probably_damaging(1) TCGA-A6-2685-01 19 51914615 51914615 C T SIGLEC10 Missense_Mutation p.R611Q 0.21 tolerated(0.11) benign(0.025) TCGA-A6-2685-01 19 56538382 56538382 G A NLRP5 Silent p.P261P 0.20 TCGA-A6-2685-01 19 7976024 7976024 G A MAP2K7 Missense_Mutation p.G279S 0.18 deleterious(0.01) probably_damaging(1) TCGA-A6-2685-01 1 160340627 160340627 G A NHLH1 Missense_Mutation p.G36R 0.23 tolerated(0.28) probably_damaging(0.956) TCGA-A6-2685-01 1 160651032 160651032 G A CD48 Silent p.S204S 0.23 TCGA-A6-2685-01 1 168074013 168074013 C T GPR161 Missense_Mutation p.V46I 0.24 tolerated(0.53) benign(0.001) TCGA-A6-2685-01 1 210796909 210796909 G A HHAT Missense_Mutation p.A430T 0.21 tolerated(0.07) probably_damaging(0.998) TCGA-A6-2685-01 1 248224896 248224896 C A OR2L3 Missense_Mutation p.Q305K 0.13 tolerated(0.51) benign(0.002) TCGA-A6-2685-01 20 43942162 43942162 C T RBPJL Missense_Mutation p.T225M 0.41 deleterious(0) probably_damaging(1) TCGA-A6-2685-01 20 49366905 49366905 C A PARD6B Silent p.G333G 0.24 TCGA-A6-2685-01 22 24829691 24829691 C T ADORA2A Missense_Mutation p.R107C 0.26 deleterious(0.02) benign(0.007) TCGA-A6-2685-01 2 135741357 135741357 C A MAP3K19 Missense_Mutation p.E1037D 0.11 tolerated(0.1) benign(0.008) TCGA-A6-2685-01 2 72725666 72725666 A G EXOC6B Silent p.P418P 0.09 TCGA-A6-2685-01 2 99993071 99993071 C T EIF5B Missense_Mutation p.A605V 0.14 benign(0.004) TCGA-A6-2685-01 3 126723499 126723499 G A PLXNA1 Missense_Mutation p.E522K 0.10 tolerated(0.78) benign(0.048) TCGA-A6-2685-01 3 156979089 156979089 C T VEPH1 Missense_Mutation p.R779H 0.12 deleterious(0.01) benign(0.323) TCGA-A6-2685-01 3 183824044 183824044 C T HTR3E Missense_Mutation p.L378F 0.15 deleterious(0.03) possibly_damaging(0.831) TCGA-A6-2685-01 3 29323102 29323102 G C RBMS3 5'UTR 0.15 TCGA-A6-2685-01 3 47604067 47604067 G A CSPG5 3'UTR 0.12 TCGA-A6-2685-01 3 9831233 9831233 T A TADA3 Missense_Mutation p.E175V 0.24 deleterious(0) possibly_damaging(0.649) TCGA-A6-2685-01 5 121786663 121786663 C T SNCAIP Silent p.S707S 0.14 TCGA-A6-2685-01 5 13692238 13692238 C T DNAH5 Missense_Mutation p.R4577Q 0.40 possibly_damaging(0.553) TCGA-A6-2685-01 5 140865513 140865513 G T PCDHGC4 Missense_Mutation p.G258V 0.18 deleterious(0) probably_damaging(0.998) TCGA-A6-2685-01 5 146754689 146754689 G C STK32A Missense_Mutation p.E314Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-A6-2685-01 5 32234005 32234005 C T MTMR12 Silent p.L516L 0.34 TCGA-A6-2685-01 5 39382876 39382876 C T DAB2 Silent p.P395P 0.22 TCGA-A6-2685-01 6 28472165 28472165 G A GPX6 Silent p.P190P 0.36 TCGA-A6-2685-01 6 50712820 50712820 G T TFAP2D Missense_Mutation p.G295V 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-A6-2685-01 7 143001774 143001774 C T CASP2 Silent p.A375A 0.19 TCGA-A6-2685-01 7 50198643 50198643 G A C7orf72 Missense_Mutation p.V399I 0.12 tolerated(0.66) benign(0.002) TCGA-A6-2685-01 7 81746416 81746416 C T CACNA2D1 Missense_Mutation p.R157Q 0.12 tolerated(0.29) probably_damaging(0.999) TCGA-A6-2685-01 7 82579451 82579451 G T PCLO Missense_Mutation p.P3485T 0.13 unknown(0) TCGA-A6-2685-01 7 92760598 92760598 C G SAMD9L Missense_Mutation p.E1563Q 0.23 tolerated(0.06) possibly_damaging(0.721) TCGA-A6-2685-01 8 11842068 11842068 C A DEFB135 Missense_Mutation p.P68Q 0.38 deleterious(0.05) probably_damaging(0.937) TCGA-A6-2685-01 8 17885385 17885385 C T PCM1 3'UTR 0.27 TCGA-A6-2685-01 8 92032424 92032424 T A TMEM55A Missense_Mutation p.K108M 0.16 deleterious(0) possibly_damaging(0.866) TCGA-A6-2685-01 9 133928319 133928319 C T LAMC3 Missense_Mutation p.R636C 0.21 deleterious(0.05) benign(0.082) TCGA-A6-2685-01 9 136338607 136338607 C T SLC2A6 Silent p.A384A 0.42 TCGA-A6-2685-01 9 95766394 95766394 C A FGD3 Missense_Mutation p.L219M 0.29 deleterious(0) probably_damaging(1) TCGA-A6-2685-01 X 108926843 108926843 T A ACSL4 5'UTR 0.26 TCGA-A6-2685-01 X 123517997 123517997 G A TENM1 Nonsense_Mutation p.R2262* 0.10 TCGA-A6-2685-01 X 152482245 152482245 C T MAGEA1 Missense_Mutation p.D256N 0.12 tolerated(1) benign(0.09) TCGA-A6-2685-01 X 34961532 34961532 C T FAM47B Missense_Mutation p.P195L 0.27 tolerated(0.83) benign(0.405) TCGA-A6-2685-01 X 73961201 73961201 C T KIAA2022 Missense_Mutation p.R1064H 0.12 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 10 100183536 100183536 C T HPS1 Silent p.L502L 0.17 TCGA-A6-2686-01 10 101089334 101089334 G A CNNM1 Missense_Mutation p.A64T 0.44 deleterious(0.02) benign(0.276) TCGA-A6-2686-01 10 101606717 101606717 G A ABCC2 Splice_Site p.X1383_splice 0.30 TCGA-A6-2686-01 10 102040811 102040811 C A BLOC1S2 Splice_Site p.X58_splice 0.38 TCGA-A6-2686-01 10 102089880 102089880 C G PKD2L1 5'UTR 0.41 TCGA-A6-2686-01 10 102689149 102689151 AGA - FAM178A In_Frame_Del p.E708del 0.24 TCGA-A6-2686-01 10 103291065 103291065 A G BTRC Missense_Mutation p.Y272C 0.26 deleterious(0.01) possibly_damaging(0.462) TCGA-A6-2686-01 10 103371118 103371118 C T FBXW4 Missense_Mutation p.R390H 0.46 deleterious(0.01) possibly_damaging(0.547) TCGA-A6-2686-01 10 103897646 103897646 A G PPRC1 Missense_Mutation p.S65G 0.22 deleterious_low_confidence(0) benign(0.137) TCGA-A6-2686-01 10 104233463 104233463 G A TMEM180 Silent p.P354P 0.32 TCGA-A6-2686-01 10 104495642 104495642 C T SFXN2 Missense_Mutation p.A282V 0.25 deleterious(0.02) benign(0.079) TCGA-A6-2686-01 10 105218356 105218356 G T CALHM1 Silent p.A51A 0.17 TCGA-A6-2686-01 10 105233259 105233259 C T CALHM3 Missense_Mutation p.S249N 0.57 tolerated(0.34) benign(0.021) TCGA-A6-2686-01 10 105819448 105819448 T - COL17A1 Frame_Shift_Del p.E391Kfs*12 0.33 TCGA-A6-2686-01 10 106907383 106907385 CAT - SORCS3 In_Frame_Del p.I439del 0.15 TCGA-A6-2686-01 10 106974328 106974328 C T SORCS3 Missense_Mutation p.A835V 0.22 tolerated(0.49) possibly_damaging(0.904) TCGA-A6-2686-01 10 112838325 112838327 GGC - ADRA2A In_Frame_Del p.G195del 0.37 TCGA-A6-2686-01 10 1130434 1130434 G A WDR37 Missense_Mutation p.S163N 0.22 tolerated(0.05) probably_damaging(0.95) TCGA-A6-2686-01 10 114900984 114900984 C - TCF7L2 Frame_Shift_Del p.L200Sfs*25 0.36 TCGA-A6-2686-01 10 115609885 115609885 C T DCLRE1A Missense_Mutation p.E327K 0.59 tolerated(0.1) benign(0.026) TCGA-A6-2686-01 10 115636431 115636431 C T NHLRC2 Silent p.C161C 0.25 TCGA-A6-2686-01 10 116593006 116593006 G C FAM160B1 Missense_Mutation p.V47L 0.17 deleterious(0.02) possibly_damaging(0.574) TCGA-A6-2686-01 10 1175201 1175201 G A WDR37 Missense_Mutation p.V468M 0.20 tolerated(0.28) benign(0.003) TCGA-A6-2686-01 10 1175231 1175231 C T WDR37 Missense_Mutation p.R478W 0.33 deleterious(0) benign(0.249) TCGA-A6-2686-01 10 118030406 118030406 G A GFRA1 Missense_Mutation p.R88C 0.17 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 10 118897432 118897432 C A VAX1 Nonsense_Mutation p.E46* 0.14 TCGA-A6-2686-01 10 118969411 118969411 G A KCNK18 Silent p.S252S 0.20 TCGA-A6-2686-01 10 119302916 119302916 G A EMX2 Silent p.P46P 0.15 TCGA-A6-2686-01 10 11963219 11963219 C T UPF2 3'UTR 0.10 TCGA-A6-2686-01 10 120488847 120488847 T - CACUL1 Frame_Shift_Del p.K186Rfs*2 0.22 TCGA-A6-2686-01 10 123842954 123842954 T C TACC2 Silent p.P313P 0.26 TCGA-A6-2686-01 10 124909566 124909566 C T HMX2 Missense_Mutation p.A250V 0.33 tolerated(0.17) benign(0.278) TCGA-A6-2686-01 10 124920011 124920011 A G BUB3 Missense_Mutation p.Y169C 0.42 tolerated(0.18) possibly_damaging(0.593) TCGA-A6-2686-01 10 126691926 126691926 G A CTBP2 Missense_Mutation p.T605M 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-A6-2686-01 10 126691936 126691936 C T CTBP2 Missense_Mutation p.A602T 0.39 deleterious(0.01) benign(0.204) TCGA-A6-2686-01 10 127677225 127677225 C T FANK1 Silent p.L99L 0.15 TCGA-A6-2686-01 10 128974555 128974555 G A FAM196A Silent p.N35N 0.26 TCGA-A6-2686-01 10 129901214 129901214 G A MKI67 Missense_Mutation p.R2964W 0.35 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 10 129903470 129903470 T C MKI67 Missense_Mutation p.T2212A 0.23 tolerated(0.06) benign(0.056) TCGA-A6-2686-01 10 129905725 129905725 T C MKI67 Missense_Mutation p.K1460R 0.16 tolerated(0.13) possibly_damaging(0.56) TCGA-A6-2686-01 10 131973284 131973284 C T GLRX3 Silent p.Y296Y 0.46 TCGA-A6-2686-01 10 13271649 13271649 C A UCMA Missense_Mutation p.R94M 0.13 deleterious(0) possibly_damaging(0.896) TCGA-A6-2686-01 10 134595633 134595633 G A INPP5A 3'UTR 0.24 TCGA-A6-2686-01 10 134598927 134598927 C T NKX6-2 Missense_Mutation p.G146R 0.15 deleterious(0) probably_damaging(0.971) TCGA-A6-2686-01 10 134699453 134699453 G A TTC40 Silent p.D1105D 0.32 TCGA-A6-2686-01 10 134940821 134940821 C T GPR123 Silent p.D162D 0.44 TCGA-A6-2686-01 10 135107107 135107107 G - TUBGCP2 Frame_Shift_Del p.H289Qfs*13 0.46 TCGA-A6-2686-01 10 135346255 135346255 A - CYP2E1 Frame_Shift_Del p.N238Mfs*5 0.16 TCGA-A6-2686-01 10 13658449 13658449 G A RP11-295P9.3 Missense_Mutation p.G159S 0.10 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 10 15255067 15255067 C T FAM171A1 Silent p.A840A 0.23 TCGA-A6-2686-01 10 15760847 15760847 G A ITGA8 Silent p.I87I 0.43 TCGA-A6-2686-01 10 17151701 17151704 GTGA - CUBN Frame_Shift_Del p.L349Qfs*21 0.17 TCGA-A6-2686-01 10 17636370 17636370 A - PTPLA Frame_Shift_Del p.F206Lfs*23 0.38 TCGA-A6-2686-01 10 18962989 18962989 C T ARL5B Missense_Mutation p.S139L 0.44 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 10 21785823 21785823 G T CASC10 5'UTR 0.48 TCGA-A6-2686-01 10 22094933 22094933 G A DNAJC1 Silent p.H358H 0.13 TCGA-A6-2686-01 10 22880629 22880629 T - PIP4K2A Frame_Shift_Del p.R141Dfs*19 0.24 TCGA-A6-2686-01 10 23326249 23326249 C T ARMC3 Silent p.Y820Y 0.54 TCGA-A6-2686-01 10 23729620 23729620 T C OTUD1 Silent p.L412L 0.18 TCGA-A6-2686-01 10 24813437 24813437 G A KIAA1217 Missense_Mutation p.G881D 0.32 tolerated(0.19) benign(0.344) TCGA-A6-2686-01 10 25284710 25284710 A T ENKUR Missense_Mutation p.N104K 0.41 deleterious(0) benign(0.12) TCGA-A6-2686-01 10 27702951 27702951 G - PTCHD3 Frame_Shift_Del p.R77Gfs*43 0.52 TCGA-A6-2686-01 10 28032314 28032314 C T MKX Missense_Mutation p.G11S 0.58 tolerated_low_confidence(0.37) benign(0.011) TCGA-A6-2686-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.44 TCGA-A6-2686-01 10 34626310 34626310 T A PARD3 Missense_Mutation p.E821V 0.29 deleterious(0.01) probably_damaging(0.986) TCGA-A6-2686-01 10 35500543 35500543 A - CREM Intron 0.43 TCGA-A6-2686-01 10 37506765 37506765 C T ANKRD30A Nonsense_Mutation p.Q1020* 0.41 TCGA-A6-2686-01 10 3821660 3821660 G A KLF6 3'UTR 0.47 TCGA-A6-2686-01 10 38647336 38647336 C T HSD17B7P2 RNA 0.41 TCGA-A6-2686-01 10 43088123 43088125 AGA - ZNF33B In_Frame_Del p.F758del 0.35 TCGA-A6-2686-01 10 43088520 43088520 C T ZNF33B Silent p.Q626Q 0.13 TCGA-A6-2686-01 10 44052975 44052976 CA - ZNF239 Frame_Shift_Del p.C184Wfs*5 0.28 TCGA-A6-2686-01 10 44139578 44139578 C T ZNF32 Missense_Mutation p.G248S 0.38 tolerated(0.39) benign(0.015) TCGA-A6-2686-01 10 44141605 44141605 G C ZNF32 5'UTR 0.11 TCGA-A6-2686-01 10 48370745 48370745 T G ZNF488 Missense_Mutation p.S71R 0.33 tolerated(0.33) benign(0.064) TCGA-A6-2686-01 10 49658426 49658426 G T ARHGAP22 Silent p.P598P 0.16 TCGA-A6-2686-01 10 50594859 50594860 CT - DRGX Frame_Shift_Del p.A100Lfs*34 0.22 TCGA-A6-2686-01 10 50819058 50819058 G A SLC18A3 Missense_Mutation p.S91N 0.17 tolerated(0.37) benign(0.009) TCGA-A6-2686-01 10 50916412 50916412 C A C10orf53 Missense_Mutation p.L75I 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.805) TCGA-A6-2686-01 10 50955200 50955200 C T OGDHL Missense_Mutation p.V348I 0.60 tolerated(0.24) benign(0.009) TCGA-A6-2686-01 10 52005194 52005194 A - ASAH2 Frame_Shift_Del p.S50Qfs*40 0.42 TCGA-A6-2686-01 10 5242294 5242295 AT - AKR1C4 Frame_Shift_Del p.F80Lfs*32 0.14 TCGA-A6-2686-01 10 52504976 52504976 C T ASAH2B Missense_Mutation p.A34V 0.49 tolerated(0.06) benign(0.119) TCGA-A6-2686-01 10 52569700 52569700 G A A1CF Silent p.G529G 0.22 TCGA-A6-2686-01 10 5496327 5496327 C A NET1 Missense_Mutation p.L290I 0.27 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 10 5498548 5498552 CAGCT TCAGCTA NET1 Splice_Site p.X462_splice 0.22 TCGA-A6-2686-01 10 55591228 55591228 C T PCDH15 Missense_Mutation p.R1350H 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-A6-2686-01 10 5567106 5567106 T A CALML3 Missense_Mutation p.F20I 0.14 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-A6-2686-01 10 5567886 5567886 G - CALML3 3'UTR 0.14 TCGA-A6-2686-01 10 5855191 5855191 C A GDI2 Missense_Mutation p.G11C 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-A6-2686-01 10 5979132 5979132 C T FBXO18 Silent p.I1058I 0.12 TCGA-A6-2686-01 10 61802493 61802493 T - ANK3 Frame_Shift_Del p.T4364Rfs*75 0.29 TCGA-A6-2686-01 10 61868614 61868614 C A ANK3 Missense_Mutation p.M1049I 0.40 possibly_damaging(0.47) TCGA-A6-2686-01 10 61946568 61946568 C T ANK3 Missense_Mutation p.G664R 0.14 probably_damaging(1) TCGA-A6-2686-01 10 69948723 69948723 G A MYPN Missense_Mutation p.R922H 0.42 deleterious(0) probably_damaging(0.985) TCGA-A6-2686-01 10 70644837 70644837 C T STOX1 Nonsense_Mutation p.R429* 0.50 TCGA-A6-2686-01 10 70765649 70765649 T C KIAA1279 Missense_Mutation p.L256S 0.28 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 10 71868962 71868962 A C H2AFY2 Silent p.R318R 0.61 TCGA-A6-2686-01 10 71903721 71903721 C T TYSND1 Missense_Mutation p.A392T 0.42 tolerated(0.72) benign(0.006) TCGA-A6-2686-01 10 73048393 73048393 C T UNC5B Missense_Mutation p.R324C 0.47 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 10 73405596 73405596 C T CDH23 Silent p.N383N 0.25 TCGA-A6-2686-01 10 74100594 74100594 G A DNAJB12 Missense_Mutation p.R260C 0.21 deleterious(0.04) possibly_damaging(0.888) TCGA-A6-2686-01 10 74100856 74100856 T C DNAJB12 Missense_Mutation p.K211R 0.10 tolerated(0.38) benign(0.017) TCGA-A6-2686-01 10 74928097 74928099 GAT - FAM149B1 Missense_Mutation p.M1? 0.26 TCGA-A6-2686-01 10 75187905 75187905 G A MSS51 Silent p.G46G 0.19 TCGA-A6-2686-01 10 75415607 75415608 - C SYNPO2L Frame_Shift_Ins p.A25Gfs*11 0.30 TCGA-A6-2686-01 10 75566525 75566525 G A NDST2 Missense_Mutation p.R380C 0.56 tolerated(0.08) probably_damaging(0.932) TCGA-A6-2686-01 10 75863593 75863593 C T VCL Missense_Mutation p.R680C 0.45 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 10 7611712 7611712 G - ITIH5 Frame_Shift_Del p.L690* 0.39 TCGA-A6-2686-01 10 79397034 79397034 C T KCNMA1 Missense_Mutation p.G123S 0.30 tolerated(0.75) benign(0.026) TCGA-A6-2686-01 10 79769697 79769697 G A POLR3A Silent p.C565C 0.26 TCGA-A6-2686-01 10 8092939 8092939 G A GATA3 5'Flank 0.24 TCGA-A6-2686-01 10 8100355 8100355 C - GATA3 Frame_Shift_Del p.W112Gfs*83 0.50 TCGA-A6-2686-01 10 81072620 81072620 C T ZMIZ1 3'UTR 0.62 TCGA-A6-2686-01 10 81374791 81374791 T C SFTPA1 3'Flank 0.20 TCGA-A6-2686-01 10 88476189 88476189 C - LDB3 Frame_Shift_Del p.S453Hfs*44 0.25 TCGA-A6-2686-01 10 89720716 89720716 A G PTEN Silent p.K289K 0.23 TCGA-A6-2686-01 10 90966798 90966798 C T CH25H Silent p.L84L 0.41 TCGA-A6-2686-01 10 91203606 91203606 T A SLC16A12 Missense_Mutation p.I71F 0.21 tolerated(0.08) benign(0.158) TCGA-A6-2686-01 10 91518609 91518609 A - KIF20B Frame_Shift_Del p.R1512Gfs*9 0.27 TCGA-A6-2686-01 10 93389696 93389696 G A PPP1R3C Silent p.A314A 0.42 TCGA-A6-2686-01 10 93593715 93593717 ATT - TNKS2 In_Frame_Del p.I462del 0.38 TCGA-A6-2686-01 10 95518036 95518036 G A LGI1 Silent p.V45V 0.26 TCGA-A6-2686-01 10 97920005 97920005 G A ZNF518A RNA 0.21 TCGA-A6-2686-01 10 98715361 98715361 G A LCOR Silent p.S328S 0.16 TCGA-A6-2686-01 10 99081223 99081223 G A FRAT1 3'UTR 0.16 TCGA-A6-2686-01 10 99211544 99211544 C T ZDHHC16 Missense_Mutation p.R38C 0.29 tolerated(0.18) possibly_damaging(0.608) TCGA-A6-2686-01 10 99350527 99350527 C T C10orf62 3'UTR 0.21 TCGA-A6-2686-01 11 1015989 1015989 G A MUC6 Missense_Mutation p.S2271L 0.46 benign(0.007) TCGA-A6-2686-01 11 102464303 102464303 C T MMP20 Missense_Mutation p.G372R 0.29 deleterious(0) probably_damaging(0.995) TCGA-A6-2686-01 11 102477310 102477310 G A MMP20 Silent p.D303D 0.14 TCGA-A6-2686-01 11 102713563 102713563 T - MMP3 Frame_Shift_Del p.I64Sfs*12 0.22 TCGA-A6-2686-01 11 105782769 105782769 A T GRIA4 Intron 0.24 TCGA-A6-2686-01 11 105925007 105925007 G A KBTBD3 Silent p.L137L 0.29 TCGA-A6-2686-01 11 107535785 107535785 C T ELMOD1 Silent p.I289I 0.37 TCGA-A6-2686-01 11 107917094 107917094 G A CUL5 Missense_Mutation p.A78T 0.24 tolerated(0.47) benign(0.004) TCGA-A6-2686-01 11 10800646 10800646 T C CTR9 Silent p.S1172S 0.21 TCGA-A6-2686-01 11 111225080 111225080 G A POU2AF1 Missense_Mutation p.A226V 0.27 tolerated(0.46) benign(0.403) TCGA-A6-2686-01 11 111250058 111250058 G A POU2AF1 5'UTR 0.38 TCGA-A6-2686-01 11 111431045 111431045 C T LAYN Silent p.N337N 0.20 TCGA-A6-2686-01 11 111614187 111614187 C A PPP2R1B Missense_Mutation p.W489C 0.14 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 11 111957618 111957618 C T SDHD 5'UTR 0.36 TCGA-A6-2686-01 11 112014373 112014373 T - IL18 Frame_Shift_Del p.E177Rfs*9 0.31 TCGA-A6-2686-01 11 112086955 112086955 G A BCO2 Missense_Mutation p.D510N 0.21 tolerated(0.1) probably_damaging(0.952) TCGA-A6-2686-01 11 11354288 11354288 C T GALNT18 Missense_Mutation p.V457M 0.16 deleterious(0.01) benign(0.066) TCGA-A6-2686-01 11 113650680 113650680 G A CLDN25 Missense_Mutation p.V55M 0.15 deleterious(0) possibly_damaging(0.853) TCGA-A6-2686-01 11 113694379 113694379 A T USP28 Missense_Mutation p.C411S 0.54 tolerated(0.09) benign(0.001) TCGA-A6-2686-01 11 116661388 116661388 C T APOA5 Missense_Mutation p.R186H 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-A6-2686-01 11 116692115 116692115 C T APOA4 Missense_Mutation p.R220H 0.44 deleterious(0.03) possibly_damaging(0.714) TCGA-A6-2686-01 11 117109801 117109801 A G RNF214 Missense_Mutation p.K198E 0.21 tolerated_low_confidence(0.15) possibly_damaging(0.79) TCGA-A6-2686-01 11 117153873 117153873 G A RNF214 Missense_Mutation p.V665I 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-A6-2686-01 11 117241859 117241859 G A CEP164 Missense_Mutation p.G277S 0.27 tolerated(0.46) benign(0.031) TCGA-A6-2686-01 11 117403197 117403197 G C DSCAML1 Missense_Mutation p.I244M 0.47 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 11 117800063 117800065 GAG - TMPRSS13 5'UTR 0.27 TCGA-A6-2686-01 11 118422963 118422963 G A IFT46 Missense_Mutation p.R242C 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-A6-2686-01 11 118771546 118771546 G A BCL9L Missense_Mutation p.P969L 0.29 benign(0.184) TCGA-A6-2686-01 11 118983249 118983249 G A C2CD2L Missense_Mutation p.R381Q 0.42 tolerated(0.19) benign(0.005) TCGA-A6-2686-01 11 119004874 119004874 G A HINFP Missense_Mutation p.R407Q 0.28 tolerated(0.15) benign(0.002) TCGA-A6-2686-01 11 119206589 119206589 C T RNF26 Silent p.L253L 0.57 TCGA-A6-2686-01 11 120998726 120998726 C T TECTA Silent p.G680G 0.19 TCGA-A6-2686-01 11 121028894 121028894 C T TECTA Silent p.N1550N 0.35 TCGA-A6-2686-01 11 123900722 123900722 C T OR10G8 Silent p.Y131Y 0.28 TCGA-A6-2686-01 11 123994440 123994440 G - VWA5A Frame_Shift_Del p.G366Afs*38 0.21 TCGA-A6-2686-01 11 124120909 124120909 A G OR8G1 Missense_Mutation p.M163V 0.22 deleterious_low_confidence(0.03) benign(0.012) TCGA-A6-2686-01 11 124294281 124294281 G T OR8B4 Missense_Mutation p.L163M 0.21 tolerated_low_confidence(0.06) probably_damaging(0.929) TCGA-A6-2686-01 11 124618260 124618260 C T VSIG2 Intron 0.26 TCGA-A6-2686-01 11 124742351 124742351 C A ROBO3 Silent p.I411I 0.55 TCGA-A6-2686-01 11 124747297 124747297 C T ROBO3 Intron 0.36 TCGA-A6-2686-01 11 124829873 124829873 G A CCDC15 Missense_Mutation p.E164K 0.54 deleterious(0.03) possibly_damaging(0.861) TCGA-A6-2686-01 11 1255763 1255763 G A MUC5B Missense_Mutation p.S828N 0.29 unknown(0) TCGA-A6-2686-01 11 126146410 126146410 C A FOXRED1 Missense_Mutation p.P365T 0.18 deleterious(0) probably_damaging(0.976) TCGA-A6-2686-01 11 1267051 1267051 G A MUC5B Missense_Mutation p.A2981T 0.06 unknown(0) TCGA-A6-2686-01 11 128781278 128781278 C T KCNJ5 Missense_Mutation p.T37I 0.20 tolerated(0.07) benign(0.008) TCGA-A6-2686-01 11 128807641 128807641 C A TP53AIP1 Missense_Mutation p.G25C 0.26 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-A6-2686-01 11 130058165 130058165 C T ST14 Nonsense_Mutation p.Q80* 0.44 TCGA-A6-2686-01 11 134241689 134241689 T A GLB1L2 Missense_Mutation p.V491D 0.53 deleterious(0) possibly_damaging(0.872) TCGA-A6-2686-01 11 14889253 14889253 G A PDE3B Missense_Mutation p.G1030S 0.47 tolerated(0.29) benign(0.011) TCGA-A6-2686-01 11 1585196 1585196 G A DUSP8 Silent p.D85D 0.62 TCGA-A6-2686-01 11 1605861 1605861 C T KRTAP5-1 Missense_Mutation p.G207S 0.18 unknown(0) TCGA-A6-2686-01 11 18357411 18357411 C T GTF2H1 Nonsense_Mutation p.R89* 0.07 TCGA-A6-2686-01 11 18588027 18588027 A G UEVLD Silent p.P120P 0.18 TCGA-A6-2686-01 11 18765678 18765679 TC - PTPN5 Frame_Shift_Del p.E55Dfs*82 0.48 TCGA-A6-2686-01 11 1902786 1902786 C - LSP1 Frame_Shift_Del p.Q236Sfs*31 0.24 TCGA-A6-2686-01 11 1955175 1955176 AG - TNNT3 Frame_Shift_Del p.R103Sfs*59 0.72 TCGA-A6-2686-01 11 20104605 20104605 C T NAV2 Missense_Mutation p.A1852V 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-A6-2686-01 11 20124926 20124926 T C NAV2 Silent p.N2240N 0.24 TCGA-A6-2686-01 11 212728 212728 C T RIC8A Silent p.A399A 0.23 TCGA-A6-2686-01 11 2356846 2356846 C T CD81-AS1 Intron 0.22 TCGA-A6-2686-01 11 2604728 2604728 G A KCNQ1 Missense_Mutation p.A329T 0.29 deleterious(0) probably_damaging(0.981) TCGA-A6-2686-01 11 2937924 2937924 C A SLC22A18 Silent p.P203P 0.51 TCGA-A6-2686-01 11 2943747 2943747 G A SLC22A18 Missense_Mutation p.D350N 0.36 deleterious(0.04) possibly_damaging(0.532) TCGA-A6-2686-01 11 30439158 30439158 C A MPPED2 Missense_Mutation p.G187C 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 11 30937259 30937259 C T DCDC1 Splice_Site p.X1151_splice 0.20 TCGA-A6-2686-01 11 33118496 33118496 C T CSTF3 Missense_Mutation p.R386Q 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-A6-2686-01 11 33129491 33129491 A G CSTF3 Missense_Mutation p.L105P 0.09 deleterious(0) possibly_damaging(0.833) TCGA-A6-2686-01 11 3849172 3849172 C T RHOG Missense_Mutation p.R66H 0.19 deleterious(0.01) benign(0.05) TCGA-A6-2686-01 11 43852529 43852529 A G HSD17B12 Missense_Mutation p.T169A 0.25 deleterious(0) probably_damaging(0.991) TCGA-A6-2686-01 11 43923213 43923213 A G ALKBH3 Missense_Mutation p.I203V 0.19 tolerated(1) benign(0.002) TCGA-A6-2686-01 11 43923244 43923244 G A ALKBH3 Missense_Mutation p.R213H 0.51 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 11 43965264 43965264 C T C11orf96 3'Flank 0.25 TCGA-A6-2686-01 11 44286565 44286565 C T ALX4 Missense_Mutation p.V359M 0.24 tolerated(0.24) benign(0.116) TCGA-A6-2686-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.21 TCGA-A6-2686-01 11 44958418 44958418 C T TP53I11 Silent p.A90A 0.32 TCGA-A6-2686-01 11 45935908 45935908 G A PEX16 Missense_Mutation p.T218I 0.29 tolerated(0.15) benign(0.249) TCGA-A6-2686-01 11 46408087 46408087 G T CHRM4 Silent p.V7V 0.52 TCGA-A6-2686-01 11 4661600 4661600 C T OR51D1 Missense_Mutation p.H194Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-A6-2686-01 11 46687051 46687051 C T ATG13 Missense_Mutation p.A373V 0.17 tolerated_low_confidence(0.37) probably_damaging(0.98) TCGA-A6-2686-01 11 46740790 46740790 C T F2 Missense_Mutation p.A2V 0.61 tolerated_low_confidence(0.14) benign(0.015) TCGA-A6-2686-01 11 46884259 46884259 G A LRP4 Silent p.N1761N 0.48 TCGA-A6-2686-01 11 47199528 47199528 C T PACSIN3 Missense_Mutation p.R410H 0.67 tolerated(0.06) benign(0.019) TCGA-A6-2686-01 11 47296265 47296265 C T MADD Missense_Mutation p.R72W 0.18 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 11 47296337 47296337 A G MADD Missense_Mutation p.N96D 0.21 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 11 47819414 47819414 C T NUP160 Missense_Mutation p.R1069H 0.45 tolerated(0.07) benign(0.334) TCGA-A6-2686-01 11 48166601 48166601 G A PTPRJ Missense_Mutation p.G946R 0.23 deleterious(0.05) benign(0.111) TCGA-A6-2686-01 11 48286313 48286313 G - OR4X1 Frame_Shift_Del p.G302Efs*3 0.26 TCGA-A6-2686-01 11 4870414 4870414 C T OR51S1 Missense_Mutation p.A9T 0.25 tolerated(0.14) benign(0.002) TCGA-A6-2686-01 11 49179535 49179535 T - FOLH1 Frame_Shift_Del p.S501Vfs*12 0.12 TCGA-A6-2686-01 11 49197418 49197419 AA - FOLH1 Frame_Shift_Del p.S338Yfs*13 0.37 TCGA-A6-2686-01 11 49974201 49974201 C T OR4C13 Missense_Mutation p.T76I 0.51 deleterious_low_confidence(0.04) benign(0.045) TCGA-A6-2686-01 11 5221129 5221129 T C OR51V1 Missense_Mutation p.T268A 0.17 deleterious(0.04) possibly_damaging(0.812) TCGA-A6-2686-01 11 5364053 5364053 C A OR51B5 Missense_Mutation p.K234N 0.39 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 11 55136173 55136173 G A OR4A15 Missense_Mutation p.V272I 0.37 tolerated_low_confidence(1) benign(0.019) TCGA-A6-2686-01 11 5530203 5530203 G - UBQLN3 Frame_Shift_Del p.H196Ifs*5 0.25 TCGA-A6-2686-01 11 5602793 5602795 CAT - OR52B6 In_Frame_Del p.I230del 0.41 TCGA-A6-2686-01 11 56128471 56128471 T - OR8J1 Frame_Shift_Del p.Y252Mfs*31 0.10 TCGA-A6-2686-01 11 5632556 5632556 G A TRIM6 Missense_Mutation p.R512H 0.46 deleterious(0) possibly_damaging(0.781) TCGA-A6-2686-01 11 56380817 56380817 G T OR5M1 Missense_Mutation p.H54Q 0.25 tolerated(0.77) benign(0.015) TCGA-A6-2686-01 11 5653885 5653885 T A TRIM34 Nonsense_Mutation p.C108* 0.29 TCGA-A6-2686-01 11 57087810 57087810 C T TNKS1BP1 Silent p.A157A 0.20 TCGA-A6-2686-01 11 57184142 57184142 G T SLC43A3 Missense_Mutation p.L225M 0.23 tolerated(0.06) benign(0.363) TCGA-A6-2686-01 11 5730360 5730360 C T TRIM22 Missense_Mutation p.R327C 0.30 tolerated(0.21) benign(0.001) TCGA-A6-2686-01 11 57512485 57512485 G A BTBD18 Silent p.S420S 0.41 TCGA-A6-2686-01 11 57958743 57958743 C T OR9Q2 Nonsense_Mutation p.R261* 0.28 TCGA-A6-2686-01 11 58980074 58980074 G - MPEG1 Frame_Shift_Del p.Q89Rfs*8 0.22 TCGA-A6-2686-01 11 60699534 60699534 G - TMEM132A Frame_Shift_Del p.A434Pfs*5 0.33 TCGA-A6-2686-01 11 60885684 60885684 C T CD5 Silent p.C44C 0.35 TCGA-A6-2686-01 11 60975115 60993944 11:60975115-60993944 - PGA3 large deletion 0.28 TCGA-A6-2686-01 11 61109302 61109302 G - DAK Frame_Shift_Del p.V193* 0.25 TCGA-A6-2686-01 11 61563190 61563190 C T FEN1 Silent p.A119A 0.40 TCGA-A6-2686-01 11 62365601 62365601 A - MTA2 Frame_Shift_Del p.Y129Tfs*33 0.34 TCGA-A6-2686-01 11 6261462 6261462 C T CNGA4 Silent p.R146R 0.27 TCGA-A6-2686-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.35 TCGA-A6-2686-01 11 6292281 6292281 C T CCKBR Silent p.G284G 0.41 TCGA-A6-2686-01 11 63742172 63742172 T C AP000721.4 Missense_Mutation p.L7P 0.30 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-A6-2686-01 11 63886076 63886079 TTTC - FLRT1 3'UTR 0.15 TCGA-A6-2686-01 11 63963198 63963198 G C STIP1 Missense_Mutation p.E195D 0.40 tolerated(0.5) benign(0.003) TCGA-A6-2686-01 11 64137357 64137357 G A RPS6KA4 Missense_Mutation p.V597I 0.28 tolerated(0.12) probably_damaging(0.984) TCGA-A6-2686-01 11 6432048 6432048 G - APBB1 Frame_Shift_Del p.P177Qfs*84 0.29 TCGA-A6-2686-01 11 64402837 64402837 C T NRXN2 Missense_Mutation p.R1164H 0.50 deleterious(0) probably_damaging(0.983) TCGA-A6-2686-01 11 64410125 64410125 C - NRXN2 Intron 0.31 TCGA-A6-2686-01 11 64603012 64603012 C T CDC42BPG Missense_Mutation p.A614T 0.19 tolerated(0.57) benign(0.043) TCGA-A6-2686-01 11 64693252 64693253 - C PPP2R5B Frame_Shift_Ins p.G18Rfs*72 0.50 TCGA-A6-2686-01 11 6472539 6472539 G A TRIM3 Missense_Mutation p.R555C 0.39 deleterious(0.03) probably_damaging(1) TCGA-A6-2686-01 11 65143870 65143870 C T SLC25A45 3'UTR 0.20 TCGA-A6-2686-01 11 65385929 65385929 A G PCNXL3 Missense_Mutation p.I366V 0.42 tolerated(0.66) benign(0) TCGA-A6-2686-01 11 6567171 6567171 C T DNHD1 Missense_Mutation p.R1668W 0.16 benign(0.284) TCGA-A6-2686-01 11 6568403 6568403 C T DNHD1 Silent p.I2078I 0.21 TCGA-A6-2686-01 11 65780907 65780907 C T CST6 3'UTR 0.41 TCGA-A6-2686-01 11 65822715 65822717 GAG - SF3B2 In_Frame_Del p.E145del 0.31 TCGA-A6-2686-01 11 65826406 65826406 C A SF3B2 Missense_Mutation p.R358S 0.13 tolerated(0.57) benign(0.003) TCGA-A6-2686-01 11 6588730 6588730 C T DNHD1 Silent p.P3997P 0.23 TCGA-A6-2686-01 11 66039391 66039391 G - RAB1B Intron 0.43 TCGA-A6-2686-01 11 66204337 66204337 T C MRPL11 Intron 0.54 TCGA-A6-2686-01 11 67186238 67186238 C A CARNS1 Missense_Mutation p.L126I 0.19 deleterious(0.01) possibly_damaging(0.765) TCGA-A6-2686-01 11 67207842 67207842 G A CORO1B Silent p.Y275Y 0.21 TCGA-A6-2686-01 11 67262619 67262619 C T PITPNM1 Missense_Mutation p.V854I 0.41 tolerated(0.28) benign(0.003) TCGA-A6-2686-01 11 67266462 67266462 G A PITPNM1 Silent p.A394A 0.50 TCGA-A6-2686-01 11 67431893 67431893 G T ALDH3B2 Missense_Mutation p.L283M 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-A6-2686-01 11 68206028 68206028 G A LRP5 Missense_Mutation p.R1409H 0.18 deleterious(0) possibly_damaging(0.576) TCGA-A6-2686-01 11 68359143 68359143 G A PPP6R3 Missense_Mutation p.A629T 0.14 tolerated(0.95) benign(0.003) TCGA-A6-2686-01 11 68552392 68552392 G A CPT1A Missense_Mutation p.R352W 0.33 deleterious(0) probably_damaging(0.99) TCGA-A6-2686-01 11 6913074 6913074 G A OR2D2 Missense_Mutation p.R220C 0.24 tolerated(0.2) benign(0.005) TCGA-A6-2686-01 11 70332529 70332529 C T SHANK2 Missense_Mutation p.R1291Q 0.44 tolerated(0.18) benign(0.004) TCGA-A6-2686-01 11 70507719 70507719 C T SHANK2 Missense_Mutation p.V641M 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 11 71166218 71166218 T C NADSYN1 Splice_Site p.X49_splice 0.40 TCGA-A6-2686-01 11 71249193 71249193 C A KRTAP5-8 Missense_Mutation p.P31H 0.17 deleterious_low_confidence(0) unknown(0) TCGA-A6-2686-01 11 71726658 71726658 G T NUMA1 Silent p.R631R 0.35 TCGA-A6-2686-01 11 72404464 72404464 C T ARAP1 Missense_Mutation p.R1287H 0.32 deleterious(0.02) possibly_damaging(0.608) TCGA-A6-2686-01 11 73820080 73820080 T - C2CD3 Frame_Shift_Del p.K654Sfs*43 0.23 TCGA-A6-2686-01 11 74875014 74875014 G A SLCO2B1 Missense_Mutation p.V52I 0.17 deleterious(0.04) benign(0.062) TCGA-A6-2686-01 11 76063605 76063605 T C PRKRIR Missense_Mutation p.T197A 0.20 tolerated(0.76) benign(0.009) TCGA-A6-2686-01 11 76796031 76796031 C T CAPN5 Silent p.P33P 0.44 TCGA-A6-2686-01 11 76826498 76826498 G A CAPN5 Missense_Mutation p.A253T 0.26 tolerated(0.08) probably_damaging(0.946) TCGA-A6-2686-01 11 76893074 76893074 G T MYO7A Missense_Mutation p.E994D 0.21 tolerated(0.53) benign(0.385) TCGA-A6-2686-01 11 76910706 76910706 G A MYO7A Silent p.T1565T 0.15 TCGA-A6-2686-01 11 77412773 77412773 C T RSF1 Missense_Mutation p.E501K 0.43 tolerated_low_confidence(0.05) benign(0.092) TCGA-A6-2686-01 11 77832193 77832193 T - ALG8 Frame_Shift_Del p.V133Wfs*24 0.32 TCGA-A6-2686-01 11 77934490 77934490 G - GAB2 Frame_Shift_Del p.P512Lfs*19 0.37 TCGA-A6-2686-01 11 792332 792332 G A SLC25A22 Silent p.A238A 0.16 TCGA-A6-2686-01 11 829517 829517 G - EFCAB4A Frame_Shift_Del p.V147Wfs*11 0.35 TCGA-A6-2686-01 11 830702 830702 C T EFCAB4A Missense_Mutation p.R259W 0.30 deleterious(0) probably_damaging(0.942) TCGA-A6-2686-01 11 83177859 83177859 C T DLG2 Missense_Mutation p.G874D 0.44 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 11 837945 837945 G A CD151 Missense_Mutation p.G207S 0.20 deleterious(0) probably_damaging(0.989) TCGA-A6-2686-01 11 8719158 8719158 G T ST5 Missense_Mutation p.P989H 0.12 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 11 8752514 8752514 G A ST5 Missense_Mutation p.A108V 0.17 tolerated_low_confidence(1) benign(0) TCGA-A6-2686-01 11 88027460 88027460 G T CTSC Missense_Mutation p.P369H 0.38 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 11 88068234 88068234 T - CTSC Frame_Shift_Del p.V64* 0.40 TCGA-A6-2686-01 11 89768770 89768770 T C TRIM49C Missense_Mutation p.W131R 0.31 tolerated(0.41) benign(0.001) TCGA-A6-2686-01 11 89911108 89911108 A - NAALAD2 Frame_Shift_Del p.K562Nfs*33 0.29 TCGA-A6-2686-01 11 92257900 92257900 C T FAT3 Silent p.T1131T 0.20 TCGA-A6-2686-01 11 92599975 92599975 C T FAT3 Silent p.G3909G 0.19 TCGA-A6-2686-01 11 92616095 92616095 T C FAT3 Missense_Mutation p.I4158T 0.44 possibly_damaging(0.58) TCGA-A6-2686-01 11 94038801 94038801 C T FOLR4 5'UTR 0.33 TCGA-A6-2686-01 11 96117220 96117221 - T CCDC82 Frame_Shift_Ins p.T231Nfs*27 0.21 TCGA-A6-2686-01 11 99941186 99941186 A G CNTN5 Missense_Mutation p.D398G 0.18 deleterious(0) possibly_damaging(0.662) TCGA-A6-2686-01 11 99942510 99942511 - T CNTN5 Frame_Shift_Ins p.L459Ffs*3 0.29 TCGA-A6-2686-01 12 100492149 100492149 T C UHRF1BP1L Missense_Mutation p.Q170R 0.40 tolerated(0.78) possibly_damaging(0.87) TCGA-A6-2686-01 12 101767204 101767204 T A UTP20 Missense_Mutation p.S2302T 0.43 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 12 101776883 101776883 A G UTP20 Missense_Mutation p.K2574R 0.21 tolerated_low_confidence(0.46) benign(0.001) TCGA-A6-2686-01 12 102147180 102147180 C T GNPTAB Missense_Mutation p.R1191H 0.08 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 12 102576371 102576371 G A PARPBP Missense_Mutation p.R410H 0.33 deleterious(0.04) probably_damaging(0.99) TCGA-A6-2686-01 12 102590126 102590126 G A PARPBP 3'UTR 0.09 TCGA-A6-2686-01 12 105199101 105199101 C T SLC41A2 Silent p.L517L 0.37 TCGA-A6-2686-01 12 105388336 105388336 G T C12orf45 Missense_Mutation p.E140D 0.42 tolerated(0.25) benign(0.012) TCGA-A6-2686-01 12 105420398 105420399 - A ALDH1L2 Frame_Shift_Ins p.I881Yfs*2 0.31 TCGA-A6-2686-01 12 10599086 10599087 AT - KLRC1 3'UTR 0.11 TCGA-A6-2686-01 12 10599177 10599177 T C KLRC1 Missense_Mutation p.I225M 0.25 deleterious(0.04) benign(0.053) TCGA-A6-2686-01 12 106460997 106460997 G A NUAK1 Silent p.G523G 0.36 TCGA-A6-2686-01 12 106632747 106632747 T - CKAP4 3'UTR 0.19 TCGA-A6-2686-01 12 108686457 108686457 G T CMKLR1 Missense_Mutation p.H95N 0.29 tolerated(0.74) benign(0.006) TCGA-A6-2686-01 12 108985723 108985723 C - TMEM119 Frame_Shift_Del p.G146Afs*114 0.22 TCGA-A6-2686-01 12 109889470 109889470 C T KCTD10 Missense_Mutation p.R291Q 0.21 tolerated_low_confidence(0.32) possibly_damaging(0.602) TCGA-A6-2686-01 12 109972552 109972552 G A UBE3B Missense_Mutation p.A1058T 0.25 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.30 TCGA-A6-2686-01 12 110449927 110449927 C T ANKRD13A Missense_Mutation p.R72C 0.35 tolerated(0.19) benign(0.004) TCGA-A6-2686-01 12 110720583 110720583 G A ATP2A2 Missense_Mutation p.A68T 0.14 deleterious(0) probably_damaging(0.989) TCGA-A6-2686-01 12 110890732 110890732 T - GPN3 3'UTR 0.23 TCGA-A6-2686-01 12 111893990 111893990 G A ATXN2 Missense_Mutation p.A1196V 0.13 possibly_damaging(0.756) TCGA-A6-2686-01 12 112370459 112370459 G A TMEM116 Silent p.V246V 0.34 TCGA-A6-2686-01 12 112607326 112607326 G A HECTD4 Silent p.G3917G 0.38 TCGA-A6-2686-01 12 112607365 112607365 G A HECTD4 Silent p.G3904G 0.37 TCGA-A6-2686-01 12 112672897 112672897 G T HECTD4 Missense_Mutation p.L1821I 0.27 probably_damaging(0.99) TCGA-A6-2686-01 12 113307504 113307504 A G RPH3A Intron 0.25 TCGA-A6-2686-01 12 113382321 113382321 C T OAS3 Silent p.Y167Y 0.27 TCGA-A6-2686-01 12 11338821 11338822 - A TAS2R42 Frame_Shift_Ins p.L242Pfs*62 0.31 TCGA-A6-2686-01 12 113416568 113416568 C A OAS2 Missense_Mutation p.P52H 0.36 tolerated(0.24) possibly_damaging(0.847) TCGA-A6-2686-01 12 113435331 113435331 A - OAS2 Frame_Shift_Del p.I214Sfs*41 0.27 TCGA-A6-2686-01 12 113442830 113442830 A - OAS2 Frame_Shift_Del p.N426Tfs*14 0.49 TCGA-A6-2686-01 12 113617804 113617804 C T DDX54 Missense_Mutation p.S104N 0.38 tolerated(0.05) benign(0.377) TCGA-A6-2686-01 12 113711040 113711040 T C TPCN1 Missense_Mutation p.F335L 0.37 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 12 114841671 114841671 C T TBX5 Silent p.A11A 0.29 TCGA-A6-2686-01 12 116421018 116421018 C T MED13L Missense_Mutation p.G1620D 0.31 deleterious(0.02) possibly_damaging(0.827) TCGA-A6-2686-01 12 116429208 116429208 A G MED13L Missense_Mutation p.L1184S 0.43 deleterious(0.03) unknown(0) TCGA-A6-2686-01 12 117402537 117402537 G A FBXW8 Missense_Mutation p.R238H 0.48 tolerated(0.07) benign(0.259) TCGA-A6-2686-01 12 117685276 117685276 G A NOS1 Silent p.F934F 0.12 TCGA-A6-2686-01 12 117977640 117977640 G A KSR2 Missense_Mutation p.T524M 0.40 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 12 118464714 118464714 G A RFC5 Silent p.G228G 0.40 TCGA-A6-2686-01 12 12006417 12006418 - T ETV6 Frame_Shift_Ins p.S131Ffs*23 0.32 TCGA-A6-2686-01 12 120572452 120572452 C - GCN1L1 Frame_Shift_Del p.V2363Cfs*3 0.33 TCGA-A6-2686-01 12 120595792 120595792 G A GCN1L1 Missense_Mutation p.P983L 0.46 probably_damaging(0.932) TCGA-A6-2686-01 12 120750770 120750770 G A SIRT4 Silent p.S292S 0.38 TCGA-A6-2686-01 12 121014455 121014455 G A RNF10 Missense_Mutation p.V808I 0.18 tolerated(0.2) benign(0.016) TCGA-A6-2686-01 12 122079259 122079259 C T ORAI1 Missense_Mutation p.P208S 0.24 tolerated_low_confidence(0.76) benign(0.004) TCGA-A6-2686-01 12 122398550 122398550 G T WDR66 Missense_Mutation p.W731C 0.30 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 12 122684865 122684865 C T LRRC43 Silent p.I493I 0.24 TCGA-A6-2686-01 12 122720397 122720397 C - VPS33A Frame_Shift_Del p.G459Afs*86 0.30 TCGA-A6-2686-01 12 122826012 122826012 C T CLIP1 Missense_Mutation p.R580Q 0.16 tolerated(1) benign(0.003) TCGA-A6-2686-01 12 124270341 124270341 G A DNAH10 Missense_Mutation p.A366T 0.26 benign(0.029) TCGA-A6-2686-01 12 124274523 124274523 C T DNAH10 Missense_Mutation p.T496M 0.24 probably_damaging(0.989) TCGA-A6-2686-01 12 124330346 124330346 A - DNAH10 Frame_Shift_Del p.K1737Nfs*15 0.30 TCGA-A6-2686-01 12 124821384 124821384 C T NCOR2 Silent p.A2010A 0.33 TCGA-A6-2686-01 12 124829248 124829248 G A NCOR2 Missense_Mutation p.R1537W 0.56 probably_damaging(0.986) TCGA-A6-2686-01 12 125396296 125396296 A G UBC Silent p.T674T 0.13 TCGA-A6-2686-01 12 125441325 125441325 C G DHX37 Missense_Mutation p.A789P 0.20 deleterious(0) probably_damaging(0.984) TCGA-A6-2686-01 12 126128644 126128644 T - TMEM132B Frame_Shift_Del p.F483Lfs*2 0.32 TCGA-A6-2686-01 12 12630318 12630318 G A DUSP16 Nonsense_Mutation p.R483* 0.30 TCGA-A6-2686-01 12 129569128 129569128 C A TMEM132D Silent p.V521V 0.29 TCGA-A6-2686-01 12 130649654 130649654 C - FZD10 3'UTR 0.27 TCGA-A6-2686-01 12 131360448 131360448 C A RAN Missense_Mutation p.P210T 0.30 deleterious(0) possibly_damaging(0.596) TCGA-A6-2686-01 12 13241821 13241821 A G GSG1 Silent p.I129I 0.20 TCGA-A6-2686-01 12 132498062 132498062 G A EP400 Silent p.S1213S 0.25 TCGA-A6-2686-01 12 132611314 132611314 C T RP13-977J11.5 5'Flank 0.31 TCGA-A6-2686-01 12 132834248 132834248 G A GALNT9 Silent p.G12G 0.20 TCGA-A6-2686-01 12 133233794 133233794 T - POLE Frame_Shift_Del p.K1170Nfs*49 0.15 TCGA-A6-2686-01 12 133294374 133294374 C T PGAM5 Missense_Mutation p.P192L 0.29 deleterious(0) benign(0.213) TCGA-A6-2686-01 12 133381393 133381393 G A GOLGA3 Silent p.N502N 0.32 TCGA-A6-2686-01 12 133384816 133384816 G A GOLGA3 Missense_Mutation p.A280V 0.42 tolerated_low_confidence(0.37) benign(0.002) TCGA-A6-2686-01 12 14706338 14706338 A G PLBD1 Missense_Mutation p.Y42H 0.33 tolerated(0.2) probably_damaging(0.951) TCGA-A6-2686-01 12 14923934 14923934 C A HIST4H4 Missense_Mutation p.G29C 0.15 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 12 14930445 14930446 - A H2AFJ 3'UTR 0.36 TCGA-A6-2686-01 12 16115811 16115811 T C DERA Silent p.A146A 0.19 TCGA-A6-2686-01 12 18891439 18891439 C T CAPZA3 Silent p.G79G 0.27 TCGA-A6-2686-01 12 20522579 20522579 G A PDE3A Missense_Mutation p.G121R 0.45 tolerated(0.07) benign(0.004) TCGA-A6-2686-01 12 20522614 20522614 C A PDE3A Silent p.P132P 0.23 TCGA-A6-2686-01 12 21220282 21220282 C T SLCO1B7 Missense_Mutation p.A524V 0.38 deleterious(0) probably_damaging(0.991) TCGA-A6-2686-01 12 21926500 21926500 G A KCNJ8 Silent p.I17I 0.29 TCGA-A6-2686-01 12 22354373 22354374 - T ST8SIA1 3'UTR 0.31 TCGA-A6-2686-01 12 22666311 22666311 T A C2CD5 Missense_Mutation p.M319L 0.34 tolerated(0.54) benign(0.147) TCGA-A6-2686-01 12 23687418 23687418 A G SOX5 Missense_Mutation p.V676A 0.33 deleterious(0.04) benign(0.156) TCGA-A6-2686-01 12 23728629 23728629 C T SOX5 Silent p.A436A 0.18 TCGA-A6-2686-01 12 24985670 24985670 A G BCAT1 Missense_Mutation p.L356P 0.32 deleterious(0.04) probably_damaging(0.949) TCGA-A6-2686-01 12 25232195 25232195 C T LRMP Silent p.R14R 0.10 TCGA-A6-2686-01 12 2614035 2614035 C T CACNA1C Missense_Mutation p.P381S 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-A6-2686-01 12 2659138 2659138 G A CACNA1C Missense_Mutation p.V474I 0.15 tolerated(0.08) benign(0.074) TCGA-A6-2686-01 12 26774062 26774062 T C ITPR2 Silent p.P1152P 0.31 TCGA-A6-2686-01 12 272698 272698 C T IQSEC3 Silent p.S874S 0.45 TCGA-A6-2686-01 12 27809552 27809552 G T PPFIBP1 Nonsense_Mutation p.E265* 0.33 TCGA-A6-2686-01 12 27835607 27835607 G A PPFIBP1 Missense_Mutation p.D746N 0.13 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 12 2910379 2910379 C T FKBP4 Nonsense_Mutation p.Q377* 0.13 TCGA-A6-2686-01 12 2912387 2912387 C T FKBP4 Missense_Mutation p.T448M 0.44 tolerated_low_confidence(0.16) benign(0) TCGA-A6-2686-01 12 31253568 31253568 G T DDX11 Splice_Site p.X626_splice 0.07 TCGA-A6-2686-01 12 31854876 31854876 C T AMN1 Silent p.L79L 0.13 TCGA-A6-2686-01 12 31944786 31944786 T G H3F3C Missense_Mutation p.E105D 0.13 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-A6-2686-01 12 33031179 33031179 C T PKP2 Missense_Mutation p.R212H 0.16 tolerated(0.33) benign(0.018) TCGA-A6-2686-01 12 34179976 34179976 T - ALG10 3'UTR 0.35 TCGA-A6-2686-01 12 38714276 38714276 C T ALG10B Missense_Mutation p.A228V 0.14 tolerated(0.13) benign(0.063) TCGA-A6-2686-01 12 39299308 39299308 C T CPNE8 Missense_Mutation p.G10D 0.38 tolerated(0.09) benign(0.006) TCGA-A6-2686-01 12 39696876 39696876 G - KIF21A Frame_Shift_Del p.P1541Lfs*6 0.20 TCGA-A6-2686-01 12 40422234 40422234 C A SLC2A13 Missense_Mutation p.W265L 0.34 deleterious(0) probably_damaging(0.98) TCGA-A6-2686-01 12 40422305 40422305 C T SLC2A13 Missense_Mutation p.M241I 0.43 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 12 40925815 40925815 T - MUC19 Intron 0.26 TCGA-A6-2686-01 12 41331472 41331472 C T CNTN1 Missense_Mutation p.A404V 0.36 deleterious(0) probably_damaging(0.99) TCGA-A6-2686-01 12 41352981 41352981 C T CNTN1 Silent p.C583C 0.20 TCGA-A6-2686-01 12 42854081 42854081 G A PRICKLE1 Missense_Mutation p.R676W 0.20 deleterious(0) probably_damaging(0.947) TCGA-A6-2686-01 12 43770094 43770094 T - ADAMTS20 Frame_Shift_Del p.N1722Tfs*17 0.33 TCGA-A6-2686-01 12 43821192 43821192 G A ADAMTS20 Silent p.C1342C 0.18 TCGA-A6-2686-01 12 46287501 46287501 G A ARID2 Missense_Mutation p.R1787H 0.33 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 12 472189 472189 G T KDM5A Silent p.S204S 0.41 TCGA-A6-2686-01 12 47471380 47471380 A - AMIGO2 Frame_Shift_Del p.L469Wfs*4 0.11 TCGA-A6-2686-01 12 48367273 48367273 G T COL2A1 Missense_Mutation p.P1461T 0.34 unknown(0) TCGA-A6-2686-01 12 48578518 48578518 G A C12orf68 3'UTR 0.35 TCGA-A6-2686-01 12 49237826 49237826 G A DDX23 Missense_Mutation p.R73W 0.13 tolerated_low_confidence(0.18) unknown(0) TCGA-A6-2686-01 12 49418486 49418486 G A KMT2D Silent p.P5309P 0.56 TCGA-A6-2686-01 12 49426631 49426631 G A KMT2D Nonsense_Mutation p.Q3953* 0.27 TCGA-A6-2686-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.17 TCGA-A6-2686-01 12 50037436 50037436 C T FMNL3 3'UTR 0.38 TCGA-A6-2686-01 12 50186521 50186521 C T NCKAP5L Missense_Mutation p.A1197T 0.23 tolerated(0.37) benign(0.014) TCGA-A6-2686-01 12 5023109 5023109 T - KCNA1 3'UTR 0.10 TCGA-A6-2686-01 12 5023310 5023310 G T KCNA1 3'UTR 0.22 TCGA-A6-2686-01 12 5024239 5024239 C T KCNA1 3'UTR 0.38 TCGA-A6-2686-01 12 50529785 50529787 TTG - CERS5 In_Frame_Del p.N235del 0.09 TCGA-A6-2686-01 12 50747257 50747257 C T FAM186A Missense_Mutation p.E1120K 0.47 tolerated(0.68) benign(0.076) TCGA-A6-2686-01 12 51451861 51451861 G A LETMD1 Missense_Mutation p.R334K 0.44 tolerated(0.16) benign(0.005) TCGA-A6-2686-01 12 51707644 51707644 C T BIN2 Missense_Mutation p.R42Q 0.29 tolerated(1) benign(0.094) TCGA-A6-2686-01 12 52201008 52201008 G A SCN8A Missense_Mutation p.R1913Q 0.34 tolerated(0.27) benign(0.02) TCGA-A6-2686-01 12 52467445 52467445 G A C12orf44 Missense_Mutation p.R4H 0.21 tolerated(0.05) benign(0.433) TCGA-A6-2686-01 12 52639249 52639249 G A KRT7 Silent p.A346A 0.10 TCGA-A6-2686-01 12 52844275 52844275 G A KRT6B Nonsense_Mutation p.Q224* 0.31 TCGA-A6-2686-01 12 52865905 52865905 G A KRT6C Missense_Mutation p.R234C 0.14 deleterious(0) probably_damaging(0.985) TCGA-A6-2686-01 12 53042098 53042098 A G KRT2 Silent p.S327S 0.39 TCGA-A6-2686-01 12 53183978 53183978 C T KRT3 Missense_Mutation p.G579S 0.56 tolerated(0.55) unknown(0) TCGA-A6-2686-01 12 53580194 53580194 C T ZNF740 Silent p.C131C 0.24 TCGA-A6-2686-01 12 53648024 53648024 G A MFSD5 3'UTR 0.39 TCGA-A6-2686-01 12 53663771 53663771 C T ESPL1 Nonsense_Mutation p.R349* 0.39 TCGA-A6-2686-01 12 53668764 53668764 C T ESPL1 Missense_Mutation p.A557V 0.31 tolerated(0.26) benign(0.1) TCGA-A6-2686-01 12 53677295 53677295 T G ESPL1 Missense_Mutation p.L1017R 0.28 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 12 53776120 53776120 G A SP1 Missense_Mutation p.G130D 0.38 tolerated(0.63) probably_damaging(0.959) TCGA-A6-2686-01 12 53818605 53818605 C A AMHR2 Missense_Mutation p.F115L 0.48 tolerated(0.79) benign(0) TCGA-A6-2686-01 12 53876363 53876363 C T MAP3K12 Missense_Mutation p.V742I 0.47 tolerated_low_confidence(0.54) benign(0.059) TCGA-A6-2686-01 12 54686606 54686606 C T NFE2 Missense_Mutation p.R225Q 0.37 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 12 54976523 54976523 T C PPP1R1A Silent p.T80T 0.33 TCGA-A6-2686-01 12 55524082 55524082 G A OR9K2 Missense_Mutation p.G177D 0.22 deleterious(0.02) possibly_damaging(0.823) TCGA-A6-2686-01 12 56092300 56092301 - C ITGA7 Frame_Shift_Ins p.A358Cfs*25 0.31 TCGA-A6-2686-01 12 56347514 56347514 C - DGKA Frame_Shift_Del p.R726Afs*9 0.48 TCGA-A6-2686-01 12 56428473 56428473 C A IKZF4 Silent p.S372S 0.12 TCGA-A6-2686-01 12 56680381 56680381 T C CS Missense_Mutation p.T31A 0.40 tolerated(0.54) benign(0) TCGA-A6-2686-01 12 56755647 56755647 C A APOF Missense_Mutation p.G115C 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-A6-2686-01 12 56811728 56811728 G A TIMELESS Silent p.S1173S 0.36 TCGA-A6-2686-01 12 57037310 57037310 G A ATP5B Silent p.V223V 0.18 TCGA-A6-2686-01 12 57106300 57106300 A - NACA 3'UTR 0.28 TCGA-A6-2686-01 12 57113608 57113608 T - NACA Frame_Shift_Del p.N569Ifs*22 0.23 TCGA-A6-2686-01 12 57389479 57389479 G T GPR182 Missense_Mutation p.W162C 0.47 tolerated(0.09) benign(0.125) TCGA-A6-2686-01 12 57571352 57571352 C T LRP1 Missense_Mutation p.R1447C 0.45 probably_damaging(0.994) TCGA-A6-2686-01 12 57600490 57600490 G A LRP1 Missense_Mutation p.R3942Q 0.46 benign(0.246) TCGA-A6-2686-01 12 57660588 57660588 G - R3HDM2 Frame_Shift_Del p.P672Lfs*34 0.13 TCGA-A6-2686-01 12 57850517 57850517 C A INHBE Silent p.S313S 0.19 TCGA-A6-2686-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.43 TCGA-A6-2686-01 12 57922311 57922311 C - MBD6 Frame_Shift_Del p.P931Lfs*15 0.36 TCGA-A6-2686-01 12 58021446 58021446 G A B4GALNT1 Missense_Mutation p.R447C 0.32 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 12 58202278 58202278 G A AVIL Silent p.N331N 0.39 TCGA-A6-2686-01 12 6128215 6128215 G T VWF Missense_Mutation p.L1457I 0.19 deleterious(0.01) possibly_damaging(0.781) TCGA-A6-2686-01 12 6143922 6143922 C T VWF Missense_Mutation p.A873T 0.33 deleterious(0.05) probably_damaging(0.989) TCGA-A6-2686-01 12 6143941 6143941 C T VWF Silent p.T866T 0.39 TCGA-A6-2686-01 12 64377821 64377821 A - SRGAP1 Frame_Shift_Del p.A57Lfs*11 0.27 TCGA-A6-2686-01 12 6456996 6456996 C T SCNN1A 3'UTR 0.25 TCGA-A6-2686-01 12 6559776 6559779 CTCT - CD27 Frame_Shift_Del p.S175Pfs*19 0.35 TCGA-A6-2686-01 12 6649516 6649516 G A IFFO1 3'UTR 0.42 TCGA-A6-2686-01 12 66703970 66703970 C T HELB Missense_Mutation p.T421I 0.25 tolerated(0.24) benign(0.017) TCGA-A6-2686-01 12 6690758 6690758 A - CHD4 Intron 0.33 TCGA-A6-2686-01 12 67699442 67699442 C T CAND1 Missense_Mutation p.A665V 0.21 deleterious(0.03) possibly_damaging(0.56) TCGA-A6-2686-01 12 69042508 69042508 C T RAP1B Missense_Mutation p.R2C 0.08 deleterious(0.02) benign(0.006) TCGA-A6-2686-01 12 6943202 6943202 C T LEPREL2 Nonsense_Mutation p.Q482* 0.36 TCGA-A6-2686-01 12 71016373 71016373 G - PTPRB Frame_Shift_Del p.Q169Rfs*46 0.38 TCGA-A6-2686-01 12 7172468 7172468 A G C1S Silent p.K194K 0.38 TCGA-A6-2686-01 12 72666590 72666590 G T TRHDE Missense_Mutation p.G11V 0.44 deleterious_low_confidence(0) possibly_damaging(0.543) TCGA-A6-2686-01 12 7470741 7470741 A G ACSM4 Missense_Mutation p.H295R 0.41 deleterious(0.01) probably_damaging(0.975) TCGA-A6-2686-01 12 7528576 7528576 C T CD163L1 Missense_Mutation p.M802I 0.45 tolerated(0.43) benign(0.003) TCGA-A6-2686-01 12 7637972 7637972 C A CD163 Missense_Mutation p.E833D 0.42 tolerated(0.14) benign(0.02) TCGA-A6-2686-01 12 7639312 7639312 G A CD163 Silent p.S747S 0.35 TCGA-A6-2686-01 12 77436869 77436869 C A E2F7 Missense_Mutation p.G367W 0.33 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 12 77449880 77449880 C T E2F7 Missense_Mutation p.A42T 0.43 tolerated(0.37) benign(0.01) TCGA-A6-2686-01 12 7923047 7923047 T - NANOGNB Frame_Shift_Del p.C151Vfs*21 0.33 TCGA-A6-2686-01 12 79693222 79693222 G A SYT1 Missense_Mutation p.R234H 0.30 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 12 8073991 8073991 G T SLC2A3 3'UTR 0.40 TCGA-A6-2686-01 12 80747221 80747222 TG - OTOGL Frame_Shift_Del p.C1835Qfs*24 0.15 TCGA-A6-2686-01 12 80761418 80761418 G T OTOGL Missense_Mutation p.D2128Y 0.45 deleterious(0.01) probably_damaging(0.909) TCGA-A6-2686-01 12 81688791 81688791 C T PPFIA2 Nonsense_Mutation p.W916* 0.20 TCGA-A6-2686-01 12 85285889 85285889 T - SLC6A15 Frame_Shift_Del p.N4Ifs*5 0.11 TCGA-A6-2686-01 12 85449556 85449556 C T LRRIQ1 Nonsense_Mutation p.R329* 0.35 TCGA-A6-2686-01 12 8629922 8629922 G A CLEC6A Nonsense_Mutation p.W164* 0.13 TCGA-A6-2686-01 12 8813477 8813477 C - MFAP5 Frame_Shift_Del p.V26Sfs*9 0.29 TCGA-A6-2686-01 12 88502880 88502880 G A CEP290 Missense_Mutation p.R816C 0.33 probably_damaging(0.999) TCGA-A6-2686-01 12 9004419 9004419 C T A2ML1 Silent p.D758D 0.40 TCGA-A6-2686-01 12 9006810 9006810 C T A2ML1 Nonsense_Mutation p.R893* 0.38 TCGA-A6-2686-01 12 93226395 93226395 C T EEA1 Missense_Mutation p.E383K 0.42 deleterious(0.04) possibly_damaging(0.488) TCGA-A6-2686-01 12 95603583 95603583 G A FGD6 Nonsense_Mutation p.R493* 0.37 TCGA-A6-2686-01 12 977841 977841 A G WNK1 Intron 0.44 TCGA-A6-2686-01 12 988852 988852 G A WNK1 Silent p.Q829Q 0.15 TCGA-A6-2686-01 12 9997262 9997262 G A KLRF1 3'UTR 0.25 TCGA-A6-2686-01 13 101717781 101717781 C T NALCN Missense_Mutation p.D1527N 0.29 deleterious(0.04) possibly_damaging(0.691) TCGA-A6-2686-01 13 103386575 103386575 G A CCDC168 Missense_Mutation p.S862L 0.11 deleterious(0.03) possibly_damaging(0.504) TCGA-A6-2686-01 13 103443646 103443646 C T KDELC1 Silent p.T269T 0.29 TCGA-A6-2686-01 13 108886322 108886322 G A ABHD13 3'UTR 0.33 TCGA-A6-2686-01 13 110436129 110436129 C A IRS2 Missense_Mutation p.G758C 0.20 deleterious(0) possibly_damaging(0.602) TCGA-A6-2686-01 13 113750705 113750705 C T MCF2L Silent p.V1032V 0.41 TCGA-A6-2686-01 13 114188379 114188379 C T TMCO3 Nonsense_Mutation p.R455* 0.28 TCGA-A6-2686-01 13 114504759 114504759 G A TMEM255B Missense_Mutation p.A215T 0.25 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 13 114783652 114783652 C T RASA3 Missense_Mutation p.R340Q 0.11 deleterious(0) probably_damaging(0.99) TCGA-A6-2686-01 13 115057218 115057219 - G UPF3A Frame_Shift_Ins p.E267Rfs*4 0.12 TCGA-A6-2686-01 13 19751461 19751461 C T TUBA3C Missense_Mutation p.R221H 0.41 deleterious_low_confidence(0.03) benign(0.009) TCGA-A6-2686-01 13 21163973 21163973 G A IFT88 Silent p.T68T 0.21 TCGA-A6-2686-01 13 21557527 21557527 G A LATS2 Missense_Mutation p.A773V 0.22 deleterious(0) probably_damaging(0.926) TCGA-A6-2686-01 13 21961683 21961683 T C ZDHHC20 Missense_Mutation p.D273G 0.21 deleterious(0) probably_damaging(0.975) TCGA-A6-2686-01 13 22067390 22067390 A - MICU2 Frame_Shift_Del p.*435N 0.33 TCGA-A6-2686-01 13 23913770 23913770 A G SACS Silent p.S1415S 0.47 TCGA-A6-2686-01 13 23929996 23929996 C T SACS Missense_Mutation p.G252D 0.44 probably_damaging(1) TCGA-A6-2686-01 13 24520062 24520062 C - ANKRD20A19P RNA 0.23 TCGA-A6-2686-01 13 24871814 24871814 C T SPATA13 Missense_Mutation p.A1175V 0.45 tolerated(0.37) benign(0.013) TCGA-A6-2686-01 13 24895994 24895994 C T C1QTNF9 3'UTR 0.17 TCGA-A6-2686-01 13 26789080 26789080 T C RNF6 Silent p.S313S 0.18 TCGA-A6-2686-01 13 26789556 26789556 C T RNF6 Missense_Mutation p.V155I 0.11 tolerated(1) benign(0) TCGA-A6-2686-01 13 30077345 30077345 G A MTUS2 3'UTR 0.24 TCGA-A6-2686-01 13 32376306 32376307 - T RXFP2 Frame_Shift_Ins p.L680Pfs*4 0.11 TCGA-A6-2686-01 13 32749688 32749688 C T FRY Silent p.D780D 0.26 TCGA-A6-2686-01 13 32799116 32799116 A G FRY Missense_Mutation p.S1655G 0.13 tolerated(1) benign(0.02) TCGA-A6-2686-01 13 32977325 32977328 ATGA - N4BP2L1 Frame_Shift_Del p.I161Mfs*11 0.53 TCGA-A6-2686-01 13 33016911 33016911 G A N4BP2L2 Missense_Mutation p.A588V 0.24 tolerated(1) benign(0.002) TCGA-A6-2686-01 13 33344305 33344305 A G PDS5B Missense_Mutation p.E1224G 0.42 tolerated_low_confidence(0.08) benign(0) TCGA-A6-2686-01 13 35747693 35747693 G T NBEA Nonsense_Mutation p.E1506* 0.19 TCGA-A6-2686-01 13 36788672 36788672 C T SOHLH2 Intron 0.66 TCGA-A6-2686-01 13 36909483 36909483 G T SPG20 Missense_Mutation p.P162Q 0.19 tolerated(0.09) benign(0.009) TCGA-A6-2686-01 13 37595655 37595655 G A SUPT20H Silent p.S582S 0.35 TCGA-A6-2686-01 13 37598274 37598274 G A SUPT20H Missense_Mutation p.P497S 0.44 tolerated(0.2) benign(0.222) TCGA-A6-2686-01 13 37598518 37598518 G - SUPT20H Frame_Shift_Del p.P464Hfs*86 0.25 TCGA-A6-2686-01 13 37678603 37678603 C T CSNK1A1L Missense_Mutation p.R264H 0.50 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-A6-2686-01 13 37679686 37679686 G A CSNK1A1L 5'UTR 0.62 TCGA-A6-2686-01 13 39263145 39263145 C T FREM2 Missense_Mutation p.P555L 0.79 deleterious(0.02) probably_damaging(1) TCGA-A6-2686-01 13 41508064 41508064 C T ELF1 Missense_Mutation p.A453T 0.22 tolerated(0.42) benign(0.125) TCGA-A6-2686-01 13 41705324 41767068 13:41705324-41767068 - KBTBD6 large deletion 0.16 TCGA-A6-2686-01 13 43469228 43469229 - A EPSTI1 Frame_Shift_Ins p.L289Sfs*24 0.33 TCGA-A6-2686-01 13 44411400 44411400 T A CCDC122 3'UTR 0.47 TCGA-A6-2686-01 13 44433880 44433880 T - CCDC122 Frame_Shift_Del p.K161Nfs*2 0.18 TCGA-A6-2686-01 13 46544576 46544576 A G ZC3H13 Silent p.S831S 0.37 TCGA-A6-2686-01 13 47269133 47269133 C T LRCH1 Missense_Mutation p.S409L 0.31 deleterious(0.02) benign(0.038) TCGA-A6-2686-01 13 50055196 50055196 G - SETDB2 Frame_Shift_Del p.G380Vfs*5 0.13 TCGA-A6-2686-01 13 50065969 50065970 - A SETDB2 Frame_Shift_Ins p.I718Nfs*6 0.29 TCGA-A6-2686-01 13 50206375 50206375 A - ARL11 3'UTR 0.29 TCGA-A6-2686-01 13 50586202 50586202 G A TRIM13 Silent p.V45V 0.53 TCGA-A6-2686-01 13 52971704 52971704 A G THSD1 Silent p.I228I 0.19 TCGA-A6-2686-01 13 53036540 53036540 A - CKAP2 Frame_Shift_Del p.R384Gfs*6 0.16 TCGA-A6-2686-01 13 58208642 58208642 C T PCDH17 Silent p.D654D 0.37 TCGA-A6-2686-01 13 61987862 61987862 G A PCDH20 Missense_Mutation p.R124W 0.23 deleterious(0) benign(0.324) TCGA-A6-2686-01 13 67800194 67800194 C A PCDH9 Missense_Mutation p.E793D 0.22 tolerated(0.27) benign(0.101) TCGA-A6-2686-01 13 73468075 73468076 - A PIBF1 Frame_Shift_Ins p.L495Ifs*10 0.30 TCGA-A6-2686-01 13 74269680 74269680 A C KLF12 Missense_Mutation p.F386V 0.19 deleterious(0) possibly_damaging(0.893) TCGA-A6-2686-01 13 77831942 77831942 G A MYCBP2 Silent p.G642G 0.12 TCGA-A6-2686-01 13 84455772 84455772 G - SLITRK1 5'UTR 0.25 TCGA-A6-2686-01 13 88330433 88330433 C T SLITRK5 Silent p.N930N 0.30 TCGA-A6-2686-01 13 96579574 96579574 C T UGGT2 Missense_Mutation p.R665H 0.09 tolerated(0.36) benign(0) TCGA-A6-2686-01 13 96684215 96684215 C T UGGT2 Missense_Mutation p.A57T 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-A6-2686-01 13 98649817 98649819 GAA - IPO5 In_Frame_Del p.E335del 0.36 TCGA-A6-2686-01 14 100123403 100123403 C T HHIPL1 Silent p.D323D 0.16 TCGA-A6-2686-01 14 100363591 100363591 C T EML1 Silent p.L282L 0.38 TCGA-A6-2686-01 14 101005154 101005154 G A BEGAIN Missense_Mutation p.H312Y 0.15 tolerated(0.06) benign(0.315) TCGA-A6-2686-01 14 102029220 102029220 G T DIO3 3'UTR 0.22 TCGA-A6-2686-01 14 102476268 102476268 C T DYNC1H1 Silent p.Y2022Y 0.26 TCGA-A6-2686-01 14 103180817 103180817 A - RCOR1 Frame_Shift_Del p.N307Ifs*32 0.23 TCGA-A6-2686-01 14 103438293 103438293 C A CDC42BPB Missense_Mutation p.R616L 0.64 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 14 103934468 103934468 C A MARK3 Missense_Mutation p.H403Q 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-A6-2686-01 14 104643681 104643681 C T KIF26A Missense_Mutation p.T1519M 0.17 tolerated(0.05) benign(0) TCGA-A6-2686-01 14 104643696 104643696 G A KIF26A Missense_Mutation p.G1524D 0.17 deleterious(0.01) possibly_damaging(0.722) TCGA-A6-2686-01 14 105416861 105416861 C - AHNAK2 Frame_Shift_Del p.D1643Tfs*9 0.12 TCGA-A6-2686-01 14 105477838 105477838 G A CDCA4 Silent p.S143S 0.33 TCGA-A6-2686-01 14 105848861 105848861 C T PACS2 Silent p.S487S 0.27 TCGA-A6-2686-01 14 106053635 106053635 G A IGHA2 Missense_Mutation p.P221L 0.16 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 14 106173866 106173866 G A IGHA1 Missense_Mutation p.P234L 0.21 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 14 106387082 106387082 C T KIAA0125 Missense_Mutation p.T44M 0.15 tolerated_low_confidence(0.25) benign(0) TCGA-A6-2686-01 14 106518833 106518833 C T IGHV3-7 Nonsense_Mutation p.W7* 0.28 TCGA-A6-2686-01 14 19563696 19563697 - A POTEG Intron 0.15 TCGA-A6-2686-01 14 20779691 20779691 C T CCNB1IP1 3'UTR 0.29 TCGA-A6-2686-01 14 20871957 20871957 G A TEP1 Silent p.D373D 0.40 TCGA-A6-2686-01 14 20928428 20928428 T - TMEM55B Frame_Shift_Del p.K128Nfs*15 0.20 TCGA-A6-2686-01 14 21462220 21462220 A G METTL17 Missense_Mutation p.K232R 0.09 tolerated(0.29) benign(0.036) TCGA-A6-2686-01 14 21550581 21550581 G A ARHGEF40 Missense_Mutation p.E1144K 0.44 deleterious(0) probably_damaging(0.975) TCGA-A6-2686-01 14 21828609 21828609 C A SUPT16H Nonsense_Mutation p.G714* 0.17 TCGA-A6-2686-01 14 21829058 21829058 C T SUPT16H Missense_Mutation p.R668H 0.28 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 14 21861872 21861872 G A CHD8 Missense_Mutation p.H2028Y 0.27 deleterious_low_confidence(0.04) benign(0.002) TCGA-A6-2686-01 14 21862072 21862072 C T CHD8 Missense_Mutation p.R1961H 0.44 tolerated(0.64) benign(0.005) TCGA-A6-2686-01 14 21991731 21991731 G A SALL2 Missense_Mutation p.R711W 0.45 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 14 23302639 23302639 C T MRPL52 Missense_Mutation p.A57V 0.28 deleterious(0) possibly_damaging(0.682) TCGA-A6-2686-01 14 23346616 23346616 C - LRP10 Frame_Shift_Del p.P676Lfs*28 0.38 TCGA-A6-2686-01 14 23390090 23390090 C A PRMT5 3'UTR 0.17 TCGA-A6-2686-01 14 23415799 23415799 C T HAUS4 Missense_Mutation p.V343I 0.21 deleterious(0.01) benign(0.05) TCGA-A6-2686-01 14 23456732 23456732 G A C14orf93 Missense_Mutation p.P437S 0.13 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-A6-2686-01 14 23502762 23502762 C - PSMB5 Frame_Shift_Del p.G107Afs*29 0.39 TCGA-A6-2686-01 14 23569487 23569487 G C C14orf119 3'UTR 0.42 TCGA-A6-2686-01 14 23885404 23885404 G A MYH7 Missense_Mutation p.R1588C 0.50 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 14 23889374 23889374 G A MYH7 Missense_Mutation p.R1136C 0.31 deleterious(0.04) probably_damaging(1) TCGA-A6-2686-01 14 24551731 24551731 C T NRL Silent p.G109G 0.22 TCGA-A6-2686-01 14 24619809 24619809 G - RNF31 Frame_Shift_Del p.D402Mfs*90 0.23 TCGA-A6-2686-01 14 24658653 24658653 G A TM9SF1 Missense_Mutation p.R597W 0.19 deleterious(0) possibly_damaging(0.586) TCGA-A6-2686-01 14 24718655 24718655 G A TGM1 Missense_Mutation p.P773L 0.29 tolerated(0.19) probably_damaging(0.985) TCGA-A6-2686-01 14 24786195 24786195 G A LTB4R 3'UTR 0.23 TCGA-A6-2686-01 14 24837614 24837614 C - NFATC4 Frame_Shift_Del p.P88Rfs*69 0.27 TCGA-A6-2686-01 14 24845274 24845274 C T NFATC4 Missense_Mutation p.R738C 0.23 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 14 24879352 24879352 A T NYNRIN Silent p.S784S 0.20 TCGA-A6-2686-01 14 24899924 24899924 G - KHNYN 5'UTR 0.33 TCGA-A6-2686-01 14 29238035 29238036 - T FOXG1 3'UTR 0.32 TCGA-A6-2686-01 14 30135310 30135310 G A PRKD1 Silent p.L170L 0.19 TCGA-A6-2686-01 14 31917365 31917365 G A DTD2 Silent p.N159N 0.24 TCGA-A6-2686-01 14 35872426 35872426 G A NFKBIA Silent p.S159S 0.38 TCGA-A6-2686-01 14 36004353 36004353 G A INSM2 Missense_Mutation p.V299M 0.29 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 14 36005057 36005057 T - INSM2 Frame_Shift_Del p.F535Lfs*6 0.43 TCGA-A6-2686-01 14 36147201 36147201 C T RALGAPA1 Missense_Mutation p.D1021N 0.16 deleterious(0) possibly_damaging(0.559) TCGA-A6-2686-01 14 36946296 36946296 C T SFTA3 Silent p.R47R 0.31 TCGA-A6-2686-01 14 38724490 38724490 G A CLEC14A Silent p.C246C 0.37 TCGA-A6-2686-01 14 45369724 45369724 G - C14orf28 Frame_Shift_Del p.G31Vfs*21 0.29 TCGA-A6-2686-01 14 47426810 47426810 C T MDGA2 Missense_Mutation p.R619Q 0.34 deleterious(0.01) possibly_damaging(0.602) TCGA-A6-2686-01 14 50089940 50089940 G T MGAT2 3'UTR 0.22 TCGA-A6-2686-01 14 50606661 50606661 A - SOS2 Frame_Shift_Del p.F928Lfs*5 0.32 TCGA-A6-2686-01 14 50844994 50844994 G T CDKL1 Intron 0.15 TCGA-A6-2686-01 14 50929418 50929418 C T MAP4K5 Missense_Mutation p.A301T 0.42 tolerated(0.7) benign(0.001) TCGA-A6-2686-01 14 51214794 51214794 C T NIN Silent p.A1660A 0.39 TCGA-A6-2686-01 14 51223934 51223934 G A NIN Missense_Mutation p.R1272C 0.45 deleterious(0.02) benign(0.01) TCGA-A6-2686-01 14 51561102 51561102 C T TRIM9 Missense_Mutation p.D186N 0.28 deleterious(0.05) benign(0.042) TCGA-A6-2686-01 14 55423758 55423758 A G WDHD1 Silent p.P970P 0.40 TCGA-A6-2686-01 14 55817405 55817405 C T FBXO34 Silent p.G99G 0.16 TCGA-A6-2686-01 14 58605704 58605704 C A C14orf37 Missense_Mutation p.V125L 0.14 tolerated(0.43) benign(0.006) TCGA-A6-2686-01 14 59789836 59789836 G A DAAM1 Missense_Mutation p.V223M 0.40 deleterious(0) unknown(0) TCGA-A6-2686-01 14 60758167 60758167 G A PPM1A Missense_Mutation p.D445N 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.633) TCGA-A6-2686-01 14 60950463 60950463 T G C14orf39 Missense_Mutation p.E60A 0.14 deleterious(0.01) possibly_damaging(0.801) TCGA-A6-2686-01 14 61748158 61748159 - T TMEM30B 5'UTR 0.32 TCGA-A6-2686-01 14 64416720 64416720 G A SYNE2 Missense_Mutation p.A196T 0.37 probably_damaging(0.999) TCGA-A6-2686-01 14 64421511 64421511 C T SYNE2 Missense_Mutation p.A222V 0.43 possibly_damaging(0.521) TCGA-A6-2686-01 14 64568676 64568676 G A SYNE2 Silent p.S4136S 0.43 TCGA-A6-2686-01 14 64593132 64593132 G T SYNE2 Nonsense_Mutation p.E4548* 0.15 TCGA-A6-2686-01 14 64935396 64935396 C T AKAP5 Missense_Mutation p.S95L 0.14 deleterious(0.02) benign(0.067) TCGA-A6-2686-01 14 65007975 65007975 G - HSPA2 Frame_Shift_Del p.G138Afs*8 0.39 TCGA-A6-2686-01 14 65009531 65009535 TCTCT - HSPA2 3'UTR 0.13 TCGA-A6-2686-01 14 66083818 66083818 G A FUT8 Intron 0.30 TCGA-A6-2686-01 14 66965148 66965149 - T LINC00238 RNA 0.34 TCGA-A6-2686-01 14 68060542 68060542 G A PIGH Missense_Mutation p.S103F 0.40 deleterious(0.01) possibly_damaging(0.789) TCGA-A6-2686-01 14 68273386 68273386 G A ZFYVE26 Missense_Mutation p.P298L 0.33 tolerated(0.44) benign(0.002) TCGA-A6-2686-01 14 68758666 68758666 G A RAD51B Silent p.V274V 0.46 TCGA-A6-2686-01 14 71267624 71267624 G C MAP3K9 Missense_Mutation p.L194V 0.23 deleterious(0) benign(0.297) TCGA-A6-2686-01 14 72055936 72055936 T C SIPA1L1 Silent p.S449S 0.17 TCGA-A6-2686-01 14 73577636 73577636 G T RBM25 Missense_Mutation p.R597L 0.35 benign(0.25) TCGA-A6-2686-01 14 73731428 73731428 C T PAPLN Missense_Mutation p.A1013V 0.19 tolerated(0.3) benign(0.209) TCGA-A6-2686-01 14 74203850 74203850 G A ELMSAN1 Nonsense_Mutation p.R534* 0.23 TCGA-A6-2686-01 14 74327243 74327243 A - PTGR2 Frame_Shift_Del p.N15Mfs*42 0.31 TCGA-A6-2686-01 14 74514658 74514659 - T CCDC176 Frame_Shift_Ins p.K227* 0.27 TCGA-A6-2686-01 14 74531581 74531581 A G ALDH6A1 Missense_Mutation p.S483P 0.11 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 14 74706342 74706342 G A VSX2 Silent p.P26P 0.28 TCGA-A6-2686-01 14 75277014 75277014 C T YLPM1 Nonsense_Mutation p.R1707* 0.21 TCGA-A6-2686-01 14 77318768 77318768 C A C14orf166B Missense_Mutation p.A263D 0.31 deleterious(0) probably_damaging(0.965) TCGA-A6-2686-01 14 77772705 77772705 T C POMT2 Missense_Mutation p.H138R 0.17 tolerated(0.07) benign(0.102) TCGA-A6-2686-01 14 78170802 78170802 T C ALKBH1 Missense_Mutation p.N68D 0.31 tolerated(0.4) benign(0.002) TCGA-A6-2686-01 14 81743259 81743259 G A STON2 Missense_Mutation p.P799L 0.27 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 14 81744198 81744198 C T STON2 Missense_Mutation p.R486Q 0.26 deleterious(0.01) possibly_damaging(0.574) TCGA-A6-2686-01 14 86089569 86089569 C T FLRT2 Missense_Mutation p.R571C 0.36 deleterious(0.02) probably_damaging(0.981) TCGA-A6-2686-01 14 86090284 86090284 C T FLRT2 3'UTR 0.49 TCGA-A6-2686-01 14 88707075 88707076 - A KCNK10 Frame_Shift_Ins p.F165Lfs*19 0.24 TCGA-A6-2686-01 14 89105213 89105213 G T EML5 Missense_Mutation p.L1426M 0.16 deleterious(0.04) probably_damaging(0.991) TCGA-A6-2686-01 14 89878534 89878534 G - FOXN3 Frame_Shift_Del p.P96Hfs*42 0.33 TCGA-A6-2686-01 14 90509459 90509459 C T TDP1 Missense_Mutation p.T600M 0.23 deleterious(0.01) probably_damaging(0.963) TCGA-A6-2686-01 14 90756845 90756845 A G NRDE2 Missense_Mutation p.F650S 0.47 tolerated(0.44) benign(0.014) TCGA-A6-2686-01 14 92343899 92343899 G T FBLN5 Missense_Mutation p.R373S 0.35 deleterious(0.02) possibly_damaging(0.645) TCGA-A6-2686-01 14 92482042 92482042 T C TRIP11 Missense_Mutation p.Q274R 0.22 tolerated(0.05) benign(0.156) TCGA-A6-2686-01 14 96730545 96730545 C T BDKRB1 Nonsense_Mutation p.R176* 0.33 TCGA-A6-2686-01 15 101602806 101602806 A G LRRK1 Missense_Mutation p.K1609E 0.22 deleterious(0.02) benign(0.146) TCGA-A6-2686-01 15 102197205 102197205 G A TARSL2 Missense_Mutation p.A727V 0.35 tolerated(0.55) benign(0.023) TCGA-A6-2686-01 15 22332583 22332583 C T RP11-69H14.6 RNA 0.08 TCGA-A6-2686-01 15 23311488 23311488 C - HERC2P2 RNA 0.20 TCGA-A6-2686-01 15 25200103 25200103 C T SNRPN Intron 0.27 TCGA-A6-2686-01 15 25925269 25925269 T C ATP10A Missense_Mutation p.R1289G 0.18 deleterious(0) benign(0.297) TCGA-A6-2686-01 15 28231761 28231761 G A OCA2 Missense_Mutation p.T404M 0.42 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 15 28511028 28511028 G A HERC2 Missense_Mutation p.A564V 0.19 probably_damaging(0.977) TCGA-A6-2686-01 15 29346197 29346197 C A APBA2 Missense_Mutation p.P37H 0.20 deleterious_low_confidence(0) benign(0.414) TCGA-A6-2686-01 15 29385313 29385313 G A APBA2 Missense_Mutation p.G369R 0.35 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 15 32929085 32929085 A G ARHGAP11A Missense_Mutation p.H704R 0.22 tolerated(0.44) benign(0.006) TCGA-A6-2686-01 15 33603214 33603214 G A RYR3 5'UTR 0.44 TCGA-A6-2686-01 15 34440831 34440831 A G KATNBL1 Splice_Site p.X186_splice 0.50 TCGA-A6-2686-01 15 34528917 34528917 C T SLC12A6 Missense_Mutation p.D1012N 0.25 tolerated(0.09) benign(0.275) TCGA-A6-2686-01 15 35086968 35086968 G A ACTC1 Silent p.N14N 0.42 TCGA-A6-2686-01 15 35664238 35664238 A - DPH6 3'UTR 0.20 TCGA-A6-2686-01 15 39545660 39545660 G A C15orf54 3'UTR 0.25 TCGA-A6-2686-01 15 40324379 40324379 C T EIF2AK4 Nonsense_Mutation p.R1557* 0.33 TCGA-A6-2686-01 15 40705243 40705243 C T IVD Silent p.G250G 0.50 TCGA-A6-2686-01 15 40764352 40764352 C T CHST14 Missense_Mutation p.R314W 0.18 deleterious(0.01) possibly_damaging(0.606) TCGA-A6-2686-01 15 41187043 41187043 G A VPS18 Missense_Mutation p.G26D 0.47 tolerated(0.65) benign(0.001) TCGA-A6-2686-01 15 41796422 41796422 T C LTK Silent p.S789S 0.29 TCGA-A6-2686-01 15 41801280 41801280 C A LTK Nonsense_Mutation p.G349* 0.56 TCGA-A6-2686-01 15 42116021 42116021 G A MAPKBP1 Silent p.P1331P 0.29 TCGA-A6-2686-01 15 42154481 42154481 C T SPTBN5 Silent p.A2465A 0.56 TCGA-A6-2686-01 15 42156010 42156010 C T SPTBN5 Silent p.A2347A 0.44 TCGA-A6-2686-01 15 42279389 42279389 G A PLA2G4E Silent p.G672G 0.33 TCGA-A6-2686-01 15 42452944 42452944 T C VPS39 3'UTR 0.46 TCGA-A6-2686-01 15 42691815 42691815 G - CAPN3 Frame_Shift_Del p.G441Vfs*22 0.27 TCGA-A6-2686-01 15 44091256 44091256 T C SERINC4 Missense_Mutation p.Y120C 0.39 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 15 44093724 44093724 A T HYPK Missense_Mutation p.E84V 0.09 deleterious(0) probably_damaging(0.995) TCGA-A6-2686-01 15 44855216 44855216 C T SPG11 3'UTR 0.47 TCGA-A6-2686-01 15 45008542 45008542 C T B2M 3'UTR 0.21 TCGA-A6-2686-01 15 45392305 45392305 C G DUOX2 Missense_Mutation p.V1043L 0.23 tolerated(0.5) benign(0.004) TCGA-A6-2686-01 15 45409320 45409320 G A DUOXA2 Missense_Mutation p.V196M 0.16 tolerated(0.45) benign(0.105) TCGA-A6-2686-01 15 45453951 45453951 G T DUOX1 Missense_Mutation p.R1291L 0.38 tolerated(0.1) benign(0.006) TCGA-A6-2686-01 15 45460061 45460061 C T SHF 3'UTR 0.57 TCGA-A6-2686-01 15 48470337 48470337 G A MYEF2 Missense_Mutation p.P33L 0.38 deleterious_low_confidence(0.05) benign(0.057) TCGA-A6-2686-01 15 48493720 48493720 A G CTXN2 Missense_Mutation p.T75A 0.45 tolerated(0.1) probably_damaging(0.983) TCGA-A6-2686-01 15 48634415 48634415 T - DUT 3'UTR 0.39 TCGA-A6-2686-01 15 50168628 50168628 G A ATP8B4 Silent p.C958C 0.46 TCGA-A6-2686-01 15 50822029 50822029 G A USP50 Missense_Mutation p.R301W 0.48 deleterious(0.02) probably_damaging(0.932) TCGA-A6-2686-01 15 51502987 51502987 G T CYP19A1 3'UTR 0.24 TCGA-A6-2686-01 15 51514564 51514564 A C CYP19A1 Missense_Mutation p.L204V 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-A6-2686-01 15 52515916 52515916 A - MYO5C Frame_Shift_Del p.L1151Wfs*19 0.16 TCGA-A6-2686-01 15 52545611 52545612 - T MYO5C Frame_Shift_Ins p.I480Nfs*10 0.34 TCGA-A6-2686-01 15 55669328 55669328 G A CCPG1 Silent p.P91P 0.33 TCGA-A6-2686-01 15 58006972 58006972 A G POLR2M 3'UTR 0.09 TCGA-A6-2686-01 15 58007033 58007033 G A POLR2M 3'UTR 0.15 TCGA-A6-2686-01 15 59377946 59377946 C T RNF111 Nonsense_Mutation p.R847* 0.27 TCGA-A6-2686-01 15 59409464 59409464 T C CCNB2 Missense_Mutation p.M291T 0.25 deleterious(0.02) possibly_damaging(0.592) TCGA-A6-2686-01 15 62160928 62160928 C T VPS13C Missense_Mutation p.R3598H 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 15 63579699 63579699 C T APH1B Silent p.G144G 0.24 TCGA-A6-2686-01 15 63967150 63967150 G A HERC1 Nonsense_Mutation p.R2413* 0.07 TCGA-A6-2686-01 15 64388338 64388338 G - SNX1 Frame_Shift_Del p.E44Rfs*18 0.50 TCGA-A6-2686-01 15 64966472 64966472 C - ZNF609 Frame_Shift_Del p.L475Ffs*6 0.20 TCGA-A6-2686-01 15 64972883 64972883 C T ZNF609 Silent p.G1328G 0.24 TCGA-A6-2686-01 15 65360148 65360148 C T RASL12 Missense_Mutation p.R9H 0.59 deleterious_low_confidence(0.01) benign(0.38) TCGA-A6-2686-01 15 66411525 66411525 C A MEGF11 Splice_Site p.X67_splice 0.23 TCGA-A6-2686-01 15 66782791 66782791 T - SNAPC5 3'Flank 0.40 TCGA-A6-2686-01 15 67713683 67713683 A G IQCH Missense_Mutation p.D758G 0.51 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 15 68468049 68468049 C T PIAS1 Missense_Mutation p.P415L 0.14 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 15 68582989 68582989 T C FEM1B Silent p.A431A 0.31 TCGA-A6-2686-01 15 68724371 68724371 G A ITGA11 Missense_Mutation p.A12V 0.36 tolerated(0.65) benign(0.001) TCGA-A6-2686-01 15 69560650 69560650 C T GLCE Silent p.S307S 0.38 TCGA-A6-2686-01 15 72432634 72432636 CTC - SENP8 3'UTR 0.18 TCGA-A6-2686-01 15 72642929 72642929 G A HEXA Silent p.Y245Y 0.22 TCGA-A6-2686-01 15 72978465 72978465 C A HIGD2B 5'UTR 0.50 TCGA-A6-2686-01 15 74428708 74428708 G A ISLR2 3'UTR 0.31 TCGA-A6-2686-01 15 75219166 75219166 G A COX5A Missense_Mutation p.R94W 0.29 deleterious(0.04) possibly_damaging(0.472) TCGA-A6-2686-01 15 76632678 76632678 G A ISL2 Silent p.T191T 0.35 TCGA-A6-2686-01 15 78212368 78212368 C A RP11-114H24.7 Intron 0.25 TCGA-A6-2686-01 15 78882591 78882591 T G CHRNA5 Silent p.T286T 0.23 TCGA-A6-2686-01 15 79058004 79058004 C A ADAMTS7 Missense_Mutation p.A1417S 0.16 tolerated(0.08) possibly_damaging(0.609) TCGA-A6-2686-01 15 82336641 82336641 C T MEX3B Silent p.T190T 0.23 TCGA-A6-2686-01 15 82575237 82575237 C A FAM154B Missense_Mutation p.S344Y 0.25 deleterious(0) probably_damaging(0.976) TCGA-A6-2686-01 15 83456055 83456055 C T FSD2 Missense_Mutation p.E30K 0.49 tolerated(0.41) benign(0.007) TCGA-A6-2686-01 15 84690265 84690268 AGTG - ADAMTSL3 Frame_Shift_Del p.S1461Rfs*47 0.49 TCGA-A6-2686-01 15 85098230 85098230 A G UBE2Q2P1 RNA 0.19 TCGA-A6-2686-01 15 85634295 85634297 AAC - PDE8A In_Frame_Del p.T247del 0.26 TCGA-A6-2686-01 15 86125312 86125312 C A AKAP13 Missense_Mutation p.P1338H 0.64 tolerated_low_confidence(0.1) benign(0.025) TCGA-A6-2686-01 15 89169908 89169908 C T AEN Silent p.Y156Y 0.62 TCGA-A6-2686-01 15 89694956 89694956 C A ABHD2 Silent p.A81A 0.24 TCGA-A6-2686-01 15 89865989 89865989 C T POLG Missense_Mutation p.A804T 0.33 tolerated(0.15) probably_damaging(1) TCGA-A6-2686-01 15 90349638 90349638 G A ANPEP Silent p.P59P 0.46 TCGA-A6-2686-01 15 91424578 91424578 G A FURIN Missense_Mutation p.A619T 0.25 tolerated(0.4) benign(0) TCGA-A6-2686-01 15 91832791 91832792 - T SV2B Frame_Shift_Ins p.G586Wfs*4 0.26 TCGA-A6-2686-01 15 99465573 99465573 C T IGF1R Missense_Mutation p.R800C 0.33 deleterious(0) probably_damaging(0.973) TCGA-A6-2686-01 15 99768794 99768794 G A TTC23 Nonsense_Mutation p.R42* 0.39 TCGA-A6-2686-01 16 11944145 11944145 C A RSL1D1 Missense_Mutation p.R79M 0.23 tolerated(0.06) probably_damaging(0.917) TCGA-A6-2686-01 16 12059297 12059297 G A TNFRSF17 Missense_Mutation p.R39H 0.18 tolerated(0.25) benign(0.059) TCGA-A6-2686-01 16 1245005 1245005 G A CACNA1H Missense_Mutation p.M111I 0.41 deleterious(0) benign(0.114) TCGA-A6-2686-01 16 1265573 1265573 G A CACNA1H Missense_Mutation p.V1742M 0.42 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 16 12798485 12798485 G A CPPED1 Silent p.H237H 0.38 TCGA-A6-2686-01 16 1388554 1388554 T C BAIAP3 Missense_Mutation p.S37P 0.17 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-A6-2686-01 16 1398436 1398436 G A BAIAP3 Missense_Mutation p.V1173M 0.31 deleterious(0) possibly_damaging(0.824) TCGA-A6-2686-01 16 1417135 1417135 C T UNKL Intron 0.17 TCGA-A6-2686-01 16 14645935 14645935 A G PARN Missense_Mutation p.W475R 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 16 15123847 15123847 C A PDXDC1 Missense_Mutation p.L445I 0.22 tolerated(0.6) benign(0.007) TCGA-A6-2686-01 16 15180242 15180242 G A RRN3 Nonsense_Mutation p.Q108* 0.22 TCGA-A6-2686-01 16 1545476 1545476 G A TELO2 Silent p.T155T 0.33 TCGA-A6-2686-01 16 1555496 1555496 C T TELO2 Missense_Mutation p.P643L 0.31 tolerated(0.32) benign(0) TCGA-A6-2686-01 16 1556298 1556300 CTT - TELO2 In_Frame_Del p.F701del 0.32 TCGA-A6-2686-01 16 15728787 15728787 G A KIAA0430 Missense_Mutation p.P278L 0.15 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-A6-2686-01 16 1576070 1576070 G A IFT140 Silent p.A862A 0.38 TCGA-A6-2686-01 16 1639685 1639685 G A IFT140 Missense_Mutation p.A244V 0.42 tolerated(1) benign(0.002) TCGA-A6-2686-01 16 1797261 1797261 C T MAPK8IP3 Missense_Mutation p.R326C 0.34 deleterious(0) probably_damaging(0.943) TCGA-A6-2686-01 16 18812803 18812803 A G ARL6IP1 5'UTR 0.33 TCGA-A6-2686-01 16 19553972 19553972 T G CCP110 Missense_Mutation p.F753V 0.31 tolerated(0.19) benign(0.142) TCGA-A6-2686-01 16 19718322 19718322 G A KNOP1 Silent p.S429S 0.33 TCGA-A6-2686-01 16 19867899 19867899 C T IQCK 3'UTR 0.36 TCGA-A6-2686-01 16 19883199 19883199 G A GPRC5B Silent p.D323D 0.31 TCGA-A6-2686-01 16 19883417 19883417 T C GPRC5B Missense_Mutation p.M251V 0.33 tolerated(0.2) benign(0.011) TCGA-A6-2686-01 16 20748443 20748443 G T THUMPD1 Missense_Mutation p.P274Q 0.21 tolerated(0.6) benign(0.003) TCGA-A6-2686-01 16 20975423 20975423 T C DNAH3 Silent p.K3261K 0.26 TCGA-A6-2686-01 16 2106730 2106730 G A TSC2 Missense_Mutation p.R245H 0.60 tolerated(0.15) benign(0.34) TCGA-A6-2686-01 16 2143829 2143829 C T PKD1 Missense_Mutation p.G3602S 0.33 benign(0.21) TCGA-A6-2686-01 16 2149862 2149862 C T PKD1 Missense_Mutation p.S3308N 0.12 possibly_damaging(0.756) TCGA-A6-2686-01 16 2152116 2152116 G A PKD1 Missense_Mutation p.R3115W 0.52 benign(0.052) TCGA-A6-2686-01 16 2159494 2159494 G A PKD1 Silent p.L1892L 0.20 TCGA-A6-2686-01 16 216028 216028 C T HBM Missense_Mutation p.A11V 0.56 tolerated(0.28) benign(0.003) TCGA-A6-2686-01 16 2161158 2161158 G A PKD1 Missense_Mutation p.T1337M 0.38 benign(0.219) TCGA-A6-2686-01 16 23479012 23479012 G A GGA2 Missense_Mutation p.R581C 0.17 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 16 24046814 24046814 C T PRKCB Missense_Mutation p.R159C 0.42 deleterious(0.03) probably_damaging(0.995) TCGA-A6-2686-01 16 24231485 24231485 C T PRKCB 3'UTR 0.44 TCGA-A6-2686-01 16 24581270 24581271 - C RBBP6 Frame_Shift_Ins p.R1089Qfs*6 0.17 TCGA-A6-2686-01 16 27549607 27549607 C - GTF3C1 Frame_Shift_Del p.D168Ifs*4 0.47 TCGA-A6-2686-01 16 2810376 2810376 G A SRRM2 Missense_Mutation p.R303H 0.43 unknown(0) TCGA-A6-2686-01 16 28846619 28846619 C A ATXN2L Missense_Mutation p.P862T 0.55 tolerated(0.14) benign(0.396) TCGA-A6-2686-01 16 28967614 28967615 AA - NFATC2IP Frame_Shift_Del p.K268Nfs*6 0.29 TCGA-A6-2686-01 16 29679257 29679257 G A SPN 3'UTR 0.52 TCGA-A6-2686-01 16 29708349 29708349 C T QPRT Silent p.F194F 0.36 TCGA-A6-2686-01 16 29824519 29824519 G A PRRT2 Silent p.P48P 0.21 TCGA-A6-2686-01 16 29923310 29923310 C G KCTD13 Missense_Mutation p.E159Q 0.56 deleterious(0.03) probably_damaging(0.929) TCGA-A6-2686-01 16 29996609 29996609 C T TAOK2 Nonsense_Mutation p.R500* 0.17 TCGA-A6-2686-01 16 3016787 3016787 G A KREMEN2 Missense_Mutation p.V211I 0.09 tolerated(1) benign(0.002) TCGA-A6-2686-01 16 30199133 30199133 G A CORO1A Missense_Mutation p.V282I 0.24 tolerated(0.45) benign(0.409) TCGA-A6-2686-01 16 30455846 30455846 C T SEPHS2 Silent p.A401A 0.21 TCGA-A6-2686-01 16 30522245 30522245 G - ITGAL Frame_Shift_Del p.D890Tfs*9 0.41 TCGA-A6-2686-01 16 30732168 30732168 T A SRCAP Missense_Mutation p.V1041D 0.37 unknown(0) TCGA-A6-2686-01 16 30794091 30794091 C T ZNF629 Missense_Mutation p.G520R 0.42 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 16 31073164 31073164 C T ZNF668 Missense_Mutation p.R385Q 0.65 tolerated(0.07) benign(0.081) TCGA-A6-2686-01 16 31091246 31091246 C T ZNF646 Missense_Mutation p.R1201W 0.47 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 16 31143784 31143784 G A PRSS8 Missense_Mutation p.A224V 0.18 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 16 3118951 3131594 16:3118951-3131594 - IL32 large deletion 0.41 TCGA-A6-2686-01 16 31230634 31230634 G A TRIM72 Missense_Mutation p.A171T 0.50 tolerated(0.12) possibly_damaging(0.548) TCGA-A6-2686-01 16 31374392 31374392 G - ITGAX Frame_Shift_Del 0.26 TCGA-A6-2686-01 16 31388181 31388181 G A ITGAX Missense_Mutation p.G857D 0.25 tolerated(0.24) benign(0.012) TCGA-A6-2686-01 16 31422667 31422667 G A ITGAD Silent p.E512E 0.19 TCGA-A6-2686-01 16 31499753 31499753 G A SLC5A2 Silent p.T357T 0.09 TCGA-A6-2686-01 16 3293439 3293439 G A MEFV Missense_Mutation p.S683L 0.33 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 16 343543 343543 G A AXIN1 Missense_Mutation p.R711C 0.13 tolerated(0.23) benign(0.03) TCGA-A6-2686-01 16 3843455 3843455 G A CREBBP Missense_Mutation p.P383L 0.22 probably_damaging(0.998) TCGA-A6-2686-01 16 422184 422184 C T TMEM8A Missense_Mutation p.A707T 0.50 tolerated(0.4) benign(0.129) TCGA-A6-2686-01 16 4405153 4405153 C T CORO7 3'UTR 0.26 TCGA-A6-2686-01 16 4407169 4407169 C A CORO7 Missense_Mutation p.E895D 0.42 deleterious(0.03) possibly_damaging(0.559) TCGA-A6-2686-01 16 4638234 4638234 C T C16orf96 Silent p.L832L 0.46 TCGA-A6-2686-01 16 46763544 46763544 C T MYLK3 Missense_Mutation p.A542T 0.15 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 16 4744975 4744975 G A NUDT16L1 Missense_Mutation p.R144Q 0.25 deleterious(0) possibly_damaging(0.672) TCGA-A6-2686-01 16 4786473 4786473 G A C16orf71 5'UTR 0.28 TCGA-A6-2686-01 16 5009319 5009319 G A SEC14L5 5'UTR 0.41 TCGA-A6-2686-01 16 50106529 50106529 A G HEATR3 Missense_Mutation p.R176G 0.14 tolerated(0.05) benign(0.076) TCGA-A6-2686-01 16 50261789 50261789 C A PAPD5 Missense_Mutation p.L599I 0.21 tolerated_low_confidence(0.41) benign(0.003) TCGA-A6-2686-01 16 51173241 51173242 - G SALL1 Frame_Shift_Ins p.V965Sfs*11 0.17 TCGA-A6-2686-01 16 52479927 52479927 G A TOX3 Silent p.S295S 0.16 TCGA-A6-2686-01 16 53679638 53679639 AG - RPGRIP1L Frame_Shift_Del p.L861Efs*6 0.26 TCGA-A6-2686-01 16 55903593 55903593 C T CES5A Missense_Mutation p.A190T 0.22 tolerated(0.07) benign(0.223) TCGA-A6-2686-01 16 56226235 56226235 G A GNAO1 Missense_Mutation p.A30T 0.28 tolerated(0.28) probably_damaging(0.918) TCGA-A6-2686-01 16 56839482 56839482 C T NUP93 Nonsense_Mutation p.R143* 0.29 TCGA-A6-2686-01 16 57279999 57279999 G A ARL2BP Missense_Mutation p.A16T 0.14 tolerated(0.6) unknown(0) TCGA-A6-2686-01 16 57507632 57507632 G A DOK4 Missense_Mutation p.T252M 0.15 deleterious_low_confidence(0.03) benign(0.197) TCGA-A6-2686-01 16 57760042 57760042 C T CCDC135 Silent p.R607R 0.12 TCGA-A6-2686-01 16 57787322 57787322 C T KATNB1 Silent p.S356S 0.17 TCGA-A6-2686-01 16 57918273 57918273 G A CNGB1 Missense_Mutation p.P1184L 0.35 deleterious(0.04) benign(0.055) TCGA-A6-2686-01 16 58018567 58018567 C T TEPP Missense_Mutation p.R160C 0.60 tolerated(0.11) possibly_damaging(0.899) TCGA-A6-2686-01 16 58018658 58018658 G A TEPP Nonsense_Mutation p.W190* 0.12 TCGA-A6-2686-01 16 58615358 58615358 C T CNOT1 Missense_Mutation p.R369H 0.17 deleterious(0.01) benign(0.35) TCGA-A6-2686-01 16 602418 602418 G A CAPN15 Silent p.A875A 0.56 TCGA-A6-2686-01 16 66436803 66436803 C T CDH5 Missense_Mutation p.P696S 0.32 deleterious(0.02) probably_damaging(1) TCGA-A6-2686-01 16 66437201 66437201 G T CDH5 3'UTR 0.38 TCGA-A6-2686-01 16 66947148 66947148 C A CDH16 Nonsense_Mutation p.E314* 0.24 TCGA-A6-2686-01 16 67229832 67229832 G A E2F4 Missense_Mutation p.S319N 0.29 tolerated(0.19) benign(0.003) TCGA-A6-2686-01 16 67244131 67244131 C T LRRC29 5'UTR 0.33 TCGA-A6-2686-01 16 67289067 67289067 C T SLC9A5 Missense_Mutation p.L212F 0.11 deleterious(0) probably_damaging(0.991) TCGA-A6-2686-01 16 67319381 67319381 G A PLEKHG4 Missense_Mutation p.R795H 0.14 deleterious(0.02) benign(0.035) TCGA-A6-2686-01 16 67424183 67424184 CT - TPPP3 Frame_Shift_Del p.S142Rfs*79 0.59 TCGA-A6-2686-01 16 67654642 67654642 C T CTCF Missense_Mutation p.R377C 0.41 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 16 67685892 67685892 G T RLTPR Missense_Mutation p.S886I 0.57 tolerated(0.06) benign(0.258) TCGA-A6-2686-01 16 68845645 68845645 T C CDH1 Silent p.N297N 0.26 TCGA-A6-2686-01 16 70076257 70076257 C T PDXDC2P RNA 0.32 TCGA-A6-2686-01 16 70211270 70211270 G A CLEC18C Missense_Mutation p.A115T 0.08 tolerated(0.47) benign(0.003) TCGA-A6-2686-01 16 70389438 70389438 G T DDX19A Nonsense_Mutation p.E53* 0.44 TCGA-A6-2686-01 16 70504252 70504252 T C FUK Missense_Mutation p.S331P 0.27 tolerated(0.33) benign(0) TCGA-A6-2686-01 16 70509305 70509305 G A FUK Silent p.S810S 0.19 TCGA-A6-2686-01 16 70986368 70986368 C T HYDIN Missense_Mutation p.G2163R 0.43 probably_damaging(0.966) TCGA-A6-2686-01 16 71318067 71318067 G A CMTR2 Missense_Mutation p.S586L 0.11 tolerated(0.11) benign(0.001) TCGA-A6-2686-01 16 71668458 71668458 G A MARVELD3 Intron 0.19 TCGA-A6-2686-01 16 71887369 71887369 T C ATXN1L 3'UTR 0.26 TCGA-A6-2686-01 16 723122 723122 C T RHOT2 Silent p.A574A 0.21 TCGA-A6-2686-01 16 74955962 74955962 G A WDR59 Silent p.L257L 0.18 TCGA-A6-2686-01 16 74999713 74999713 G A WDR59 Missense_Mutation p.A21V 0.28 deleterious(0.01) probably_damaging(0.962) TCGA-A6-2686-01 16 75681746 75681746 G - TERF2IP 5'UTR 0.39 TCGA-A6-2686-01 16 814954 814954 G A MSLN Missense_Mutation p.R143H 0.40 tolerated(0.56) benign(0.017) TCGA-A6-2686-01 16 81953115 81953115 G A PLCG2 Missense_Mutation p.R694H 0.35 deleterious(0) probably_damaging(0.956) TCGA-A6-2686-01 16 825491 825491 C T MSLNL Missense_Mutation p.A424T 0.14 possibly_damaging(0.897) TCGA-A6-2686-01 16 830130 830130 G A MSLNL Silent p.L291L 0.21 TCGA-A6-2686-01 16 83520097 83520097 G A CDH13 Missense_Mutation p.R313Q 0.25 tolerated(0.26) benign(0.382) TCGA-A6-2686-01 16 84229033 84229033 G A ADAD2 Missense_Mutation p.A371T 0.43 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 16 84520271 84520271 G T TLDC1 Silent p.A308A 0.22 TCGA-A6-2686-01 16 85010045 85010045 C - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.28 TCGA-A6-2686-01 16 86544384 86544384 C T FOXF1 Missense_Mutation p.T70M 0.23 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 16 88494506 88494506 C - ZNF469 Frame_Shift_Del p.Q212Rfs*134 0.47 TCGA-A6-2686-01 16 88691128 88691128 C T ZC3H18 Missense_Mutation p.R673W 0.37 deleterious_low_confidence(0) unknown(0) TCGA-A6-2686-01 16 88788458 88788458 C T PIEZO1 Missense_Mutation p.E1658K 0.55 deleterious(0.02) probably_damaging(0.997) TCGA-A6-2686-01 16 89617009 89617009 G A SPG7 Missense_Mutation p.V591M 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-A6-2686-01 16 89715878 89715878 C T CHMP1A Missense_Mutation p.A45T 0.65 deleterious(0) possibly_damaging(0.71) TCGA-A6-2686-01 16 89763809 89763809 C T SPATA2L Missense_Mutation p.R403Q 0.25 tolerated(1) benign(0.004) TCGA-A6-2686-01 16 89845355 89845355 C T FANCA Missense_Mutation p.R591Q 0.40 deleterious(0) benign(0.238) TCGA-A6-2686-01 16 89922642 89922642 G A SPIRE2 Missense_Mutation p.R367H 0.26 deleterious(0.05) possibly_damaging(0.891) TCGA-A6-2686-01 16 89985835 89985835 G A MC1R Missense_Mutation p.A57T 0.41 tolerated(0.05) benign(0.003) TCGA-A6-2686-01 16 89986221 89986221 C T MC1R Silent p.H185H 0.36 TCGA-A6-2686-01 16 90021608 90021608 G A DEF8 Silent p.P113P 0.31 TCGA-A6-2686-01 16 90103743 90103743 G A GAS8 Missense_Mutation p.R287Q 0.35 tolerated(0.89) benign(0.009) TCGA-A6-2686-01 17 10223761 10223761 G A MYH13 Missense_Mutation p.A1055V 0.11 tolerated(0.1) benign(0) TCGA-A6-2686-01 17 10346626 10346626 G A MYH4 3'UTR 0.74 TCGA-A6-2686-01 17 10408152 10408152 T - MYH1 Frame_Shift_Del p.N889Mfs*24 0.19 TCGA-A6-2686-01 17 10537352 10537352 C T MYH3 Missense_Mutation p.E1502K 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-A6-2686-01 17 10545845 10545845 C A MYH3 Missense_Mutation p.G593C 0.83 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 17 10545922 10545922 G T MYH3 Missense_Mutation p.P567H 0.19 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 17 11607533 11607533 G A DNAH9 Missense_Mutation p.C1722Y 0.83 possibly_damaging(0.702) TCGA-A6-2686-01 17 13504465 13504465 C T HS3ST3A1 5'UTR 0.20 TCGA-A6-2686-01 17 15341252 15341252 T C CDRT4 Silent p.L98L 0.86 TCGA-A6-2686-01 17 15968334 15968334 C A NCOR1 Splice_Site p.X1651_splice 0.70 TCGA-A6-2686-01 17 16247953 16247953 C T CENPV Missense_Mutation p.V218I 0.10 tolerated(0.27) benign(0.28) TCGA-A6-2686-01 17 16593783 16593783 G A CCDC144A Silent p.T23T 0.84 TCGA-A6-2686-01 17 16667499 16667500 - T CCDC144A Intron 0.21 TCGA-A6-2686-01 17 17250190 17250190 C - NT5M Frame_Shift_Del p.R208Afs*34 0.65 TCGA-A6-2686-01 17 17701567 17701567 C T RAI1 Silent p.L1769L 0.44 TCGA-A6-2686-01 17 17754256 17754256 G A TOM1L2 Missense_Mutation p.A430V 0.44 tolerated(0.29) benign(0.002) TCGA-A6-2686-01 17 18087857 18087857 C T ALKBH5 Silent p.C100C 0.11 TCGA-A6-2686-01 17 18566601 18566601 A G ZNF286B Missense_Mutation p.I73T 0.46 tolerated(0.1) benign(0) TCGA-A6-2686-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.33 TCGA-A6-2686-01 17 20805602 20805602 C T RP11-344E13.3 RNA 0.08 TCGA-A6-2686-01 17 21323152 21323152 G T KCNJ12 3'UTR 0.24 TCGA-A6-2686-01 17 25972905 25972905 A G LGALS9 Missense_Mutation p.T199A 0.18 tolerated(0.19) benign(0.003) TCGA-A6-2686-01 17 26116654 26116654 C T NOS2 Silent p.P57P 0.51 TCGA-A6-2686-01 17 26900793 26900793 T C ALDOC Missense_Mutation p.N320S 0.19 deleterious(0.03) benign(0.18) TCGA-A6-2686-01 17 27018009 27018009 G A SUPT6H Silent p.A1187A 0.27 TCGA-A6-2686-01 17 27031419 27031419 G A PROCA1 Missense_Mutation p.R88W 0.20 deleterious(0) benign(0.014) TCGA-A6-2686-01 17 27075986 27075986 G A TRAF4 Silent p.R268R 0.45 TCGA-A6-2686-01 17 27086258 27086258 G - FAM222B Frame_Shift_Del p.P240Rfs*3 0.26 TCGA-A6-2686-01 17 27381691 27381691 G C PIPOX Missense_Mutation p.E263D 0.10 deleterious(0.02) benign(0.22) TCGA-A6-2686-01 17 27419984 27419984 C T MYO18A Silent p.L1654L 0.69 TCGA-A6-2686-01 17 27893175 27893175 C T ABHD15 Silent p.E270E 0.38 TCGA-A6-2686-01 17 28384815 28384815 A T EFCAB5 Missense_Mutation p.E829D 0.17 deleterious(0.04) possibly_damaging(0.739) TCGA-A6-2686-01 17 28712175 28712175 T C CPD Silent p.G305G 0.19 TCGA-A6-2686-01 17 28964258 28964258 C T LRRC37BP1 RNA 0.15 TCGA-A6-2686-01 17 29187625 29187625 C T ATAD5 Missense_Mutation p.S1044F 0.20 deleterious(0.03) benign(0.064) TCGA-A6-2686-01 17 29231320 29231320 C T TEFM Missense_Mutation p.A87T 0.08 tolerated(0.15) benign(0.225) TCGA-A6-2686-01 17 29553478 29553478 C - NF1 Frame_Shift_Del p.P678Rfs*10 0.33 TCGA-A6-2686-01 17 30190388 30190388 C T UTP6 Missense_Mutation p.G595D 0.18 deleterious(0) probably_damaging(0.93) TCGA-A6-2686-01 17 3030365 3030366 GT - OR1G1 Frame_Shift_Del p.L161Sfs*12 0.14 TCGA-A6-2686-01 17 30349263 30349263 G A LRRC37B Silent p.Q366Q 0.66 TCGA-A6-2686-01 17 30349512 30349512 G A LRRC37B Silent p.P449P 0.54 TCGA-A6-2686-01 17 30354848 30354848 C T LRRC37B Silent p.Y604Y 0.20 TCGA-A6-2686-01 17 30796174 30796174 C - PSMD11 Frame_Shift_Del p.P204Lfs*48 0.41 TCGA-A6-2686-01 17 30814926 30814926 C A CDK5R1 Silent p.S96S 0.13 TCGA-A6-2686-01 17 30815695 30815695 T - CDK5R1 3'UTR 0.28 TCGA-A6-2686-01 17 33486413 33486413 G T UNC45B Missense_Mutation p.K276N 0.29 deleterious(0.01) possibly_damaging(0.868) TCGA-A6-2686-01 17 33520949 33520949 G A SLC35G3 Silent p.P126P 0.65 TCGA-A6-2686-01 17 33880370 33880370 A G SLFN14 Missense_Mutation p.I428T 0.54 tolerated(0.24) benign(0.007) TCGA-A6-2686-01 17 3438918 3438918 C T TRPV3 Missense_Mutation p.A245T 0.09 deleterious(0) possibly_damaging(0.876) TCGA-A6-2686-01 17 3474896 3474896 C T SHPK Missense_Mutation p.V757M 0.11 deleterious(0.03) possibly_damaging(0.717) TCGA-A6-2686-01 17 3494284 3494284 G A SHPK Missense_Mutation p.A193V 0.75 tolerated(0.07) possibly_damaging(0.638) TCGA-A6-2686-01 17 34958311 34958311 G A MRM1 Silent p.A24A 0.38 TCGA-A6-2686-01 17 35896116 35896116 T C SYNRG Missense_Mutation p.N1211D 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-A6-2686-01 17 3716219 3716219 G T C17orf85 3'UTR 0.62 TCGA-A6-2686-01 17 37762476 37762476 G A NEUROD2 Missense_Mutation p.A126V 0.11 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 17 38813964 38813964 T - KRT222 Frame_Shift_Del p.K162Sfs*16 0.28 TCGA-A6-2686-01 17 38859835 38859835 G T KRT24 Silent p.G37G 0.65 TCGA-A6-2686-01 17 38976800 38976800 G A KRT10 Missense_Mutation p.T277I 0.13 deleterious(0.01) probably_damaging(0.959) TCGA-A6-2686-01 17 39135111 39135111 G A KRT40 Missense_Mutation p.R381W 0.63 deleterious(0.04) possibly_damaging(0.88) TCGA-A6-2686-01 17 39215755 39215755 T C KRTAP2-3 3'UTR 0.31 TCGA-A6-2686-01 17 39305577 39305577 C T KRTAP4-5 Missense_Mutation p.R148H 0.22 unknown(0) TCGA-A6-2686-01 17 39471685 39471685 C - KRTAP17-1 Frame_Shift_Del p.G73Vfs*41 0.50 TCGA-A6-2686-01 17 39525760 39525760 G A KRT33B Silent p.N81N 0.16 TCGA-A6-2686-01 17 39553748 39553748 C T KRT31 Missense_Mutation p.S15N 0.50 tolerated(0.05) benign(0.223) TCGA-A6-2686-01 17 39553771 39553771 C T KRT31 Silent p.L7L 0.50 TCGA-A6-2686-01 17 3967843 3967843 A G ZZEF1 Silent p.P1510P 0.78 TCGA-A6-2686-01 17 39925789 39925789 C T JUP Missense_Mutation p.A117T 0.67 tolerated(0.15) benign(0.026) TCGA-A6-2686-01 17 39977275 39977275 G T FKBP10 Missense_Mutation p.G445C 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-A6-2686-01 17 40049292 40049292 G T ACLY Missense_Mutation p.P532H 0.33 deleterious(0) probably_damaging(0.985) TCGA-A6-2686-01 17 40058065 40058065 C T ACLY Missense_Mutation p.G356D 0.25 deleterious(0) possibly_damaging(0.862) TCGA-A6-2686-01 17 40179718 40179718 C T ZNF385C Missense_Mutation p.R399H 0.54 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 17 40946664 40946664 C - WNK4 Frame_Shift_Del p.L778Sfs*157 0.46 TCGA-A6-2686-01 17 40997773 40997773 G A AOC2 Missense_Mutation p.R377H 0.27 tolerated(0.09) possibly_damaging(0.546) TCGA-A6-2686-01 17 41168521 41168521 G T VAT1 Missense_Mutation p.L301M 0.60 tolerated(0.62) benign(0.078) TCGA-A6-2686-01 17 41170655 41170655 G A VAT1 Silent p.F183F 0.11 TCGA-A6-2686-01 17 41605971 41605971 G T ETV4 Silent p.S457S 0.08 TCGA-A6-2686-01 17 41606511 41606511 T C ETV4 Missense_Mutation p.M408V 0.08 deleterious(0) probably_damaging(0.976) TCGA-A6-2686-01 17 41932639 41932639 G A CD300LG Missense_Mutation p.A262T 0.59 tolerated(0.56) benign(0.137) TCGA-A6-2686-01 17 42091796 42091796 C T TMEM101 Missense_Mutation p.A83T 0.46 deleterious(0) probably_damaging(0.913) TCGA-A6-2686-01 17 42151594 42151594 C A G6PC3 Silent p.A95A 0.53 TCGA-A6-2686-01 17 42430128 42430128 G A GRN Missense_Mutation p.A582T 0.21 tolerated(0.89) benign(0.001) TCGA-A6-2686-01 17 42478367 42478368 - T GPATCH8 Frame_Shift_Ins p.E360Rfs*3 0.42 TCGA-A6-2686-01 17 42828094 42828094 C T DBF4B Nonsense_Mutation p.Q441* 0.58 TCGA-A6-2686-01 17 43195436 43195436 G A PLCD3 Silent p.I395I 0.20 TCGA-A6-2686-01 17 43228216 43228216 A G HEXIM1 3'UTR 0.24 TCGA-A6-2686-01 17 44073913 44073913 G A MAPT Silent p.S570S 0.26 TCGA-A6-2686-01 17 44101463 44101463 G A MAPT Missense_Mutation p.D753N 0.62 tolerated(1) benign(0.022) TCGA-A6-2686-01 17 44788472 44788472 C T NSF Silent p.S538S 0.35 TCGA-A6-2686-01 17 4496372 4496372 A G SMTNL2 Silent p.S212S 0.63 TCGA-A6-2686-01 17 4575752 4575752 G A PELP1 Missense_Mutation p.P845L 0.84 unknown(0) TCGA-A6-2686-01 17 47302294 47302294 C T PHOSPHO1 Missense_Mutation p.E65K 0.48 deleterious(0) possibly_damaging(0.901) TCGA-A6-2686-01 17 48273722 48273722 G - COL1A1 Frame_Shift_Del p.R304Vfs*237 0.48 TCGA-A6-2686-01 17 48559671 48559671 C T RSAD1 Missense_Mutation p.R232W 0.46 deleterious(0) probably_damaging(0.991) TCGA-A6-2686-01 17 4858804 4858804 A G ENO3 Missense_Mutation p.Y257C 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-2686-01 17 48618621 48618621 A C EPN3 Missense_Mutation p.K427N 0.12 tolerated(0.79) benign(0.011) TCGA-A6-2686-01 17 48674005 48674005 C A CACNA1G Missense_Mutation p.A1021D 0.15 tolerated(0.43) benign(0.039) TCGA-A6-2686-01 17 48701338 48701338 C T CACNA1G Missense_Mutation p.T2044M 0.18 tolerated(0.73) probably_damaging(0.99) TCGA-A6-2686-01 17 5085451 5085451 G T ZNF594 Missense_Mutation p.L701I 0.74 tolerated(1) benign(0.007) TCGA-A6-2686-01 17 5085459 5085459 T C ZNF594 Missense_Mutation p.H698R 0.68 deleterious(0.01) probably_damaging(0.989) TCGA-A6-2686-01 17 52990090 52990090 T A TOM1L1 Missense_Mutation p.F96I 0.13 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 17 53345288 53345288 C - HLF Frame_Shift_Del p.S100Afs*106 0.38 TCGA-A6-2686-01 17 54431402 54431402 C T ANKFN1 Missense_Mutation p.P202L 0.25 deleterious(0) probably_damaging(0.982) TCGA-A6-2686-01 17 5463285 5463285 G A NLRP1 Missense_Mutation p.A244V 0.79 tolerated_low_confidence(0.46) benign(0) TCGA-A6-2686-01 17 55055575 55055575 C T SCPEP1 Silent p.L19L 0.56 TCGA-A6-2686-01 17 56271378 56271378 C T EPX Silent p.A173A 0.30 TCGA-A6-2686-01 17 56283513 56283513 C T MKS1 Missense_Mutation p.R536Q 0.43 deleterious(0.03) probably_damaging(0.954) TCGA-A6-2686-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.33 TCGA-A6-2686-01 17 56440643 56440643 G - RNF43 Frame_Shift_Del p.P192Rfs*11 0.39 TCGA-A6-2686-01 17 56582836 56582836 C A MTMR4 Missense_Mutation p.S367I 0.53 deleterious(0) probably_damaging(0.929) TCGA-A6-2686-01 17 56707864 56707864 G A TEX14 Missense_Mutation p.A63V 0.20 deleterious(0) probably_damaging(0.974) TCGA-A6-2686-01 17 57271030 57271030 C T PRR11 Missense_Mutation p.P194S 0.17 deleterious(0) probably_damaging(0.992) TCGA-A6-2686-01 17 57287749 57287749 G - SMG8 Frame_Shift_Del p.G114Vfs*120 0.50 TCGA-A6-2686-01 17 57288200 57288200 C T SMG8 Missense_Mutation p.P263L 0.26 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 17 57657073 57657073 G A DHX40 Silent p.Q392Q 0.27 TCGA-A6-2686-01 17 58303522 58303522 G A USP32 Missense_Mutation p.A437V 0.19 tolerated(0.35) benign(0.003) TCGA-A6-2686-01 17 58504134 58504134 C T C17orf64 Nonsense_Mutation p.R129* 0.31 TCGA-A6-2686-01 17 61611296 61611296 C T KCNH6 Missense_Mutation p.P242L 0.52 deleterious(0) benign(0.356) TCGA-A6-2686-01 17 61615464 61615464 A G KCNH6 Missense_Mutation p.I514V 0.62 deleterious(0) benign(0.385) TCGA-A6-2686-01 17 61988208 61988208 G T CSHL1 Silent p.T29T 0.25 TCGA-A6-2686-01 17 62018729 62018729 C A SCN4A Missense_Mutation p.S1638I 0.41 deleterious(0) benign(0.252) TCGA-A6-2686-01 17 62034596 62034596 C T SCN4A Missense_Mutation p.D768N 0.14 deleterious(0) possibly_damaging(0.898) TCGA-A6-2686-01 17 62034875 62034875 G A SCN4A Missense_Mutation p.R675W 0.13 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 17 62892264 62892264 C T LRRC37A3 Missense_Mutation p.R371K 0.15 tolerated(0.8) benign(0.001) TCGA-A6-2686-01 17 6331722 6331722 G A AIPL1 Silent p.F127F 0.93 TCGA-A6-2686-01 17 63534315 63534315 C T AXIN2 Intron 0.35 TCGA-A6-2686-01 17 63957602 63957602 G T CEP112 Silent p.V617V 0.49 TCGA-A6-2686-01 17 64059082 64059082 T - CEP112 Frame_Shift_Del p.K358Sfs*6 0.19 TCGA-A6-2686-01 17 64728894 64728894 T G PRKCA Missense_Mutation p.L336R 0.42 deleterious(0.01) benign(0.192) TCGA-A6-2686-01 17 65336874 65336874 A - PSMD12 3'UTR 0.50 TCGA-A6-2686-01 17 65955939 65955941 AAG - BPTF In_Frame_Del p.K2738del 0.16 TCGA-A6-2686-01 17 66270134 66270134 C T SLC16A6 Missense_Mutation p.G104R 0.35 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 17 66538855 66538856 CT - FAM20A Frame_Shift_Del p.S303Cfs*76 0.18 TCGA-A6-2686-01 17 66929355 66929355 T G ABCA8 Missense_Mutation p.E175A 0.21 tolerated(0.12) benign(0.065) TCGA-A6-2686-01 17 68175358 68175358 G A KCNJ2 3'UTR 0.23 TCGA-A6-2686-01 17 6939720 6939720 C - SLC16A13 Frame_Shift_Del p.D9Tfs*50 0.60 TCGA-A6-2686-01 17 7129956 7129956 G T DVL2 Missense_Mutation p.L516I 0.79 tolerated(0.05) possibly_damaging(0.542) TCGA-A6-2686-01 17 7162266 7162266 C T ELP5 Intron 0.18 TCGA-A6-2686-01 17 72281314 72281314 G A DNAI2 Missense_Mutation p.V107I 0.40 tolerated(1) benign(0.001) TCGA-A6-2686-01 17 72285778 72285778 C - DNAI2 Frame_Shift_Del p.D173Mfs*22 0.18 TCGA-A6-2686-01 17 72926824 72926824 G A OTOP2 Missense_Mutation p.R365H 0.18 deleterious(0) probably_damaging(0.98) TCGA-A6-2686-01 17 72958388 72958388 C T HID1 Nonsense_Mutation p.W184* 0.27 TCGA-A6-2686-01 17 73008950 73008950 A G ICT1 Missense_Mutation p.T57A 0.24 tolerated(0.26) benign(0.007) TCGA-A6-2686-01 17 73055683 73055683 G A KCTD2 Missense_Mutation p.G207S 0.45 deleterious(0.04) possibly_damaging(0.565) TCGA-A6-2686-01 17 73235495 73235495 G T GGA3 Missense_Mutation p.L581M 0.48 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 17 73274376 73274376 C A SLC25A19 Missense_Mutation p.R167M 0.43 deleterious(0) possibly_damaging(0.845) TCGA-A6-2686-01 17 73626753 73626753 C T RECQL5 Missense_Mutation p.R555Q 0.53 tolerated(0.54) benign(0.001) TCGA-A6-2686-01 17 73739838 73739838 C T ITGB4 Missense_Mutation p.R1003C 0.41 deleterious(0) possibly_damaging(0.697) TCGA-A6-2686-01 17 73814802 73814802 C - UNK Frame_Shift_Del p.P486Lfs*12 0.23 TCGA-A6-2686-01 17 73888859 73888859 G A TRIM65 Missense_Mutation p.R163C 0.42 deleterious(0) benign(0.326) TCGA-A6-2686-01 17 74072889 74072889 G A GALR2 Missense_Mutation p.A181T 0.37 tolerated(0.58) benign(0.063) TCGA-A6-2686-01 17 74465319 74465319 A G AANAT Silent p.L121L 0.10 TCGA-A6-2686-01 17 74527137 74527137 G A CYGB Missense_Mutation p.R155C 0.19 tolerated(0.07) benign(0.002) TCGA-A6-2686-01 17 75398315 75398315 G A SEPT9 Missense_Mutation p.R84H 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.789) TCGA-A6-2686-01 17 75398372 75398372 C T SEPT9 Missense_Mutation p.P103L 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-A6-2686-01 17 75483595 75483595 C T SEPT9 Missense_Mutation p.R335C 0.43 deleterious(0) probably_damaging(0.964) TCGA-A6-2686-01 17 7606714 7606715 - G WRAP53 Frame_Shift_Ins p.A522Gfs*8 0.66 TCGA-A6-2686-01 17 7640491 7640491 C A DNAH2 Missense_Mutation p.P362H 0.19 probably_damaging(0.928) TCGA-A6-2686-01 17 76420082 76420082 G A DNAH17 Missense_Mutation p.R4455C 0.22 probably_damaging(1) TCGA-A6-2686-01 17 76450629 76450629 G A DNAH17 Silent p.D3429D 0.19 TCGA-A6-2686-01 17 7751137 7751137 C - KDM6B Frame_Shift_Del p.R513Afs*69 0.61 TCGA-A6-2686-01 17 78211333 78211333 G A SLC26A11 Missense_Mutation p.G309R 0.38 deleterious(0) benign(0.4) TCGA-A6-2686-01 17 78262529 78262531 CTC - RNF213 In_Frame_Del p.P305del 0.56 TCGA-A6-2686-01 17 78327690 78327690 T C RNF213 Intron 0.31 TCGA-A6-2686-01 17 78931440 78931440 G T RPTOR Silent p.V1129V 0.20 TCGA-A6-2686-01 17 79205784 79205784 C T ENTHD2 Nonsense_Mutation p.W188* 0.21 TCGA-A6-2686-01 17 79414310 79414310 G A RP11-1055B8.7 Missense_Mutation p.E1138K 0.17 benign(0.013) TCGA-A6-2686-01 17 79517984 79517984 G A C17orf70 Missense_Mutation p.T179M 0.13 tolerated(0.05) benign(0.044) TCGA-A6-2686-01 17 79518027 79518027 G A C17orf70 Missense_Mutation p.R165W 0.13 tolerated(0.09) benign(0.038) TCGA-A6-2686-01 17 79612324 79612324 C G TSPAN10 Missense_Mutation p.P115A 0.22 tolerated(0.75) possibly_damaging(0.728) TCGA-A6-2686-01 17 79813068 79813068 C T P4HB Missense_Mutation p.V192M 0.24 deleterious(0) possibly_damaging(0.578) TCGA-A6-2686-01 17 7984450 7984452 CTC - ALOX12B In_Frame_Del p.E136del 0.21 TCGA-A6-2686-01 17 80202641 80202641 G A CSNK1D 3'UTR 0.64 TCGA-A6-2686-01 17 80789895 80789895 C T ZNF750 Missense_Mutation p.A146T 0.54 tolerated(0.83) benign(0.005) TCGA-A6-2686-01 17 8159760 8159760 C T PFAS Intron 0.78 TCGA-A6-2686-01 17 904451 904451 C T TIMM22 3'UTR 0.77 TCGA-A6-2686-01 17 915129 915129 G A ABR Silent p.G686G 0.81 TCGA-A6-2686-01 17 9515680 9515680 C T WDR16 Silent p.H303H 0.11 TCGA-A6-2686-01 18 11884550 11884550 C T MPPE1 Missense_Mutation p.C362Y 0.13 deleterious(0.02) possibly_damaging(0.578) TCGA-A6-2686-01 18 19112508 19112508 G A ESCO1 Silent p.C767C 0.21 TCGA-A6-2686-01 18 21533074 21533074 G A LAMA3 Splice_Site p.X3286_splice 0.11 TCGA-A6-2686-01 18 21894273 21894273 G A OSBPL1A Silent p.C303C 0.29 TCGA-A6-2686-01 18 22804601 22804601 G A ZNF521 Missense_Mutation p.A1094V 0.27 deleterious(0.02) benign(0.006) TCGA-A6-2686-01 18 22806051 22806051 C T ZNF521 Missense_Mutation p.A611T 0.49 tolerated(0.32) benign(0.003) TCGA-A6-2686-01 18 28662233 28662233 T - DSC2 Frame_Shift_Del p.T412Pfs*8 0.36 TCGA-A6-2686-01 18 2945674 2945674 G A LPIN2 Intron 0.30 TCGA-A6-2686-01 18 3273043 3273043 C T MYL12B Silent p.I49I 0.25 TCGA-A6-2686-01 18 33694061 33694061 A G SLC39A6 Silent p.I614I 0.62 TCGA-A6-2686-01 18 34297974 34297974 C A FHOD3 Missense_Mutation p.L730I 0.57 deleterious(0.02) probably_damaging(0.99) TCGA-A6-2686-01 18 44089662 44089662 C A LOXHD1 Missense_Mutation p.R728M 0.27 deleterious(0) probably_damaging(0.992) TCGA-A6-2686-01 18 45374882 45374882 G A SMAD2 Nonsense_Mutation p.R321* 0.55 TCGA-A6-2686-01 18 47015638 47015639 AT - RPL17-C18orf32 Intron 0.23 TCGA-A6-2686-01 18 54423915 54423915 G A WDR7 Silent p.A697A 0.38 TCGA-A6-2686-01 18 54694291 54694291 C T WDR7 Silent p.R1442R 0.94 TCGA-A6-2686-01 18 56246440 56246440 T - ALPK2 Frame_Shift_Del p.K523Rfs*15 0.33 TCGA-A6-2686-01 18 61231243 61231243 A C SERPINB12 Missense_Mutation p.I179L 0.62 tolerated(0.12) benign(0.075) TCGA-A6-2686-01 18 669102 669103 AA - TYMS Frame_Shift_Del p.R163Sfs*3 0.28 TCGA-A6-2686-01 18 67562986 67562986 G T CD226 Silent p.A226A 0.29 TCGA-A6-2686-01 18 6999630 6999630 A T LAMA1 Missense_Mutation p.S1493T 0.23 tolerated(0.91) benign(0.006) TCGA-A6-2686-01 18 7011334 7011334 A - LAMA1 Frame_Shift_Del p.Y1218Tfs*20 0.30 TCGA-A6-2686-01 18 7035998 7035998 G A LAMA1 Silent p.D609D 0.35 TCGA-A6-2686-01 18 72346596 72346596 C T ZNF407 Silent p.A1207A 0.19 TCGA-A6-2686-01 18 74637297 74637297 A G ZNF236 Missense_Mutation p.M1270V 0.29 deleterious(0.01) benign(0.006) TCGA-A6-2686-01 18 76754664 76754664 G A SALL3 Silent p.A891A 0.40 TCGA-A6-2686-01 18 8253295 8253295 G A PTPRM Silent p.P879P 0.23 TCGA-A6-2686-01 18 8720417 8720417 G A SOGA2 Missense_Mutation p.E94K 0.30 deleterious(0) possibly_damaging(0.844) TCGA-A6-2686-01 18 8784453 8784453 G A SOGA2 Missense_Mutation p.R448Q 0.38 tolerated(0.16) benign(0.003) TCGA-A6-2686-01 18 8825170 8825170 G T SOGA2 Missense_Mutation p.G1221V 0.27 tolerated(0.07) benign(0.093) TCGA-A6-2686-01 18 9535961 9535961 C T RALBP1 3'UTR 0.30 TCGA-A6-2686-01 19 10202223 10202224 - C C19orf66 Frame_Shift_Ins p.R190Afs*57 0.40 TCGA-A6-2686-01 19 10225753 10225753 C T P2RY11 3'UTR 0.21 TCGA-A6-2686-01 19 10404511 10404511 G A ICAM5 Missense_Mutation p.V535I 0.19 tolerated(0.33) benign(0.007) TCGA-A6-2686-01 19 10406101 10406101 C T ICAM5 Silent p.R770R 0.54 TCGA-A6-2686-01 19 10431543 10431543 T C RAVER1 Missense_Mutation p.N537D 0.29 tolerated(0.5) benign(0.05) TCGA-A6-2686-01 19 10431551 10431551 G A RAVER1 Missense_Mutation p.P534L 0.32 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 19 1046354 1046354 G A ABCA7 Missense_Mutation p.R524Q 0.23 tolerated(0.29) benign(0.316) TCGA-A6-2686-01 19 1049358 1049358 G - ABCA7 Frame_Shift_Del p.L827Sfs*28 0.29 TCGA-A6-2686-01 19 10610471 10610471 G A KEAP1 Missense_Mutation p.T80I 0.52 tolerated(0.17) benign(0.081) TCGA-A6-2686-01 19 11660427 11660427 C A CNN1 Missense_Mutation p.H237Q 0.11 tolerated(0.2) benign(0.067) TCGA-A6-2686-01 19 12691865 12691865 C T ZNF490 Missense_Mutation p.A342T 0.35 tolerated(0.12) possibly_damaging(0.871) TCGA-A6-2686-01 19 12902925 12902925 G - JUNB Frame_Shift_Del p.G115Vfs*35 0.40 TCGA-A6-2686-01 19 12991790 12991790 C T DNASE2 Missense_Mutation p.S88N 0.15 tolerated(0.14) benign(0.38) TCGA-A6-2686-01 19 12996294 12996294 C - KLF1 Frame_Shift_Del p.T251Lfs*7 0.34 TCGA-A6-2686-01 19 13065247 13065247 A G GADD45GIP1 Silent p.A148A 0.34 TCGA-A6-2686-01 19 13265516 13265516 G - IER2 3'UTR 0.25 TCGA-A6-2686-01 19 13397338 13397338 G - CACNA1A Frame_Shift_Del p.L1178Sfs*8 0.32 TCGA-A6-2686-01 19 13616768 13616768 C T CACNA1A Missense_Mutation p.A91T 0.18 benign(0.023) TCGA-A6-2686-01 19 13870014 13870014 C T CCDC130 Silent p.S167S 0.17 TCGA-A6-2686-01 19 14006192 14006192 C T C19orf57 Missense_Mutation p.V67I 0.26 tolerated(0.2) possibly_damaging(0.636) TCGA-A6-2686-01 19 14024359 14024359 C T CC2D1A Missense_Mutation p.A219V 0.20 tolerated(0.31) benign(0.001) TCGA-A6-2686-01 19 14040451 14040451 G - CC2D1A Frame_Shift_Del p.G898Vfs*45 0.35 TCGA-A6-2686-01 19 14640467 14640467 G A TECR 5'UTR 0.27 TCGA-A6-2686-01 19 1483429 1483429 G A PCSK4 Silent p.N475N 0.46 TCGA-A6-2686-01 19 14991557 14991557 C A OR7A17 Missense_Mutation p.G204V 0.53 tolerated_low_confidence(1) benign(0.001) TCGA-A6-2686-01 19 15562698 15562698 C T RASAL3 Missense_Mutation p.V982I 0.20 tolerated(0.51) benign(0.01) TCGA-A6-2686-01 19 1581105 1581105 G A MBD3 Silent p.T221T 0.32 TCGA-A6-2686-01 19 15839237 15839237 C - OR10H2 Frame_Shift_Del p.L130Cfs*7 0.17 TCGA-A6-2686-01 19 16918761 16918762 - A NWD1 Frame_Shift_Ins p.N1368Kfs*41 0.32 TCGA-A6-2686-01 19 17108002 17108002 G - CPAMD8 Frame_Shift_Del p.V386Cfs*41 0.21 TCGA-A6-2686-01 19 17122455 17122455 C - CPAMD8 Frame_Shift_Del p.G174Afs*21 0.26 TCGA-A6-2686-01 19 17166792 17166792 G A HAUS8 Silent p.F222F 0.35 TCGA-A6-2686-01 19 17361074 17361074 G T USHBP1 Missense_Mutation p.P691H 0.29 tolerated(0.27) benign(0.359) TCGA-A6-2686-01 19 17403574 17403574 C A ABHD8 Nonsense_Mutation p.E406* 0.20 TCGA-A6-2686-01 19 17411898 17411898 C A ABHD8 Silent p.V176V 0.18 TCGA-A6-2686-01 19 17887061 17887061 C T FCHO1 Silent p.T396T 0.19 TCGA-A6-2686-01 19 17942179 17942179 C T JAK3 Missense_Mutation p.V946M 0.23 deleterious(0) possibly_damaging(0.869) TCGA-A6-2686-01 19 1816726 1816726 A G REXO1 Silent p.P1096P 0.17 TCGA-A6-2686-01 19 18685889 18685889 C T UBA52 Missense_Mutation p.R106C 0.25 tolerated(0.16) benign(0.003) TCGA-A6-2686-01 19 1912270 1912270 T C ADAT3 Missense_Mutation p.L75P 0.60 deleterious(0) probably_damaging(0.971) TCGA-A6-2686-01 19 19135959 19135959 T C SUGP2 Missense_Mutation p.N400D 0.22 tolerated(0.11) possibly_damaging(0.764) TCGA-A6-2686-01 19 1917810 1917810 G A SCAMP4 Missense_Mutation p.R42Q 0.36 deleterious(0.03) benign(0.015) TCGA-A6-2686-01 19 19313133 19313133 A G NR2C2AP Intron 0.18 TCGA-A6-2686-01 19 19369444 19369444 C - HAPLN4 Frame_Shift_Del p.T236Pfs*43 0.36 TCGA-A6-2686-01 19 19756194 19756194 G A ATP13A1 3'UTR 0.21 TCGA-A6-2686-01 19 20117636 20117636 T C ZNF682 Silent p.G225G 0.35 TCGA-A6-2686-01 19 2118774 2118774 C T AP3D1 Silent p.T513T 0.57 TCGA-A6-2686-01 19 2123876 2123876 G A AP3D1 Missense_Mutation p.L287F 0.22 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 19 2129322 2129324 TGA - AP3D1 In_Frame_Del p.I242del 0.42 TCGA-A6-2686-01 19 21605924 21605924 C T ZNF493 Nonsense_Mutation p.Q155* 0.32 TCGA-A6-2686-01 19 21950244 21950244 A G ZNF100 5'UTR 0.48 TCGA-A6-2686-01 19 2291461 2291461 G A LINGO3 Silent p.R105R 0.41 TCGA-A6-2686-01 19 2413898 2413898 C T TMPRSS9 Silent p.A451A 0.21 TCGA-A6-2686-01 19 306704 306704 C T MIER2 Missense_Mutation p.V542M 0.11 tolerated_low_confidence(0.07) possibly_damaging(0.898) TCGA-A6-2686-01 19 3284935 3284935 G A CELF5 Missense_Mutation p.A359T 0.19 deleterious(0.03) benign(0.439) TCGA-A6-2686-01 19 33095214 33095214 C A ANKRD27 Missense_Mutation p.Q870H 0.41 tolerated(1) possibly_damaging(0.522) TCGA-A6-2686-01 19 33117696 33117696 G A ANKRD27 Silent p.G486G 0.29 TCGA-A6-2686-01 19 33424444 33424444 C A CEP89 Missense_Mutation p.A267S 0.33 tolerated(0.45) benign(0.202) TCGA-A6-2686-01 19 33792439 33792439 G A CEBPA Silent p.I294I 0.09 TCGA-A6-2686-01 19 3381730 3381730 C T NFIC Silent p.I17I 0.23 TCGA-A6-2686-01 19 34297820 34297822 CAA - KCTD15 In_Frame_Del p.Q99del 0.49 TCGA-A6-2686-01 19 34942992 34942992 C T UBA2 Silent p.I326I 0.44 TCGA-A6-2686-01 19 3546365 3546365 G A MFSD12 Missense_Mutation p.A361V 0.40 benign(0.006) TCGA-A6-2686-01 19 3548142 3548143 - C MFSD12 Frame_Shift_Ins p.Q212Pfs*202 0.52 TCGA-A6-2686-01 19 3586840 3586840 G A GIPC3 Missense_Mutation p.R147Q 0.30 tolerated(0.25) benign(0.124) TCGA-A6-2686-01 19 3599868 3599868 G A TBXA2R Silent p.S255S 0.42 TCGA-A6-2686-01 19 36038246 36038246 C T TMEM147 Missense_Mutation p.S191L 0.19 tolerated(0.41) benign(0) TCGA-A6-2686-01 19 36210844 36210844 C T KMT2B Missense_Mutation p.R199W 0.41 unknown(0) TCGA-A6-2686-01 19 36223814 36223814 G - KMT2B Frame_Shift_Del p.G2123Vfs*30 0.26 TCGA-A6-2686-01 19 36228761 36228761 C T KMT2B Missense_Mutation p.R2554C 0.16 probably_damaging(0.985) TCGA-A6-2686-01 19 36342479 36342479 G A NPHS1 Missense_Mutation p.R52C 0.56 deleterious(0) possibly_damaging(0.766) TCGA-A6-2686-01 19 36380907 36380907 G A NFKBID Missense_Mutation p.P258L 0.47 tolerated(0.32) possibly_damaging(0.558) TCGA-A6-2686-01 19 36517491 36517491 G A CLIP3 Nonsense_Mutation p.R187* 0.11 TCGA-A6-2686-01 19 36606492 36606492 G T TBCB Silent p.T10T 0.30 TCGA-A6-2686-01 19 3661919 3661919 G A PIP5K1C Silent p.R100R 0.33 TCGA-A6-2686-01 19 36727608 36727608 C T ZNF146 Missense_Mutation p.T89M 0.41 tolerated(0.13) benign(0.046) TCGA-A6-2686-01 19 37369728 37369728 T - ZNF345 3'UTR 0.09 TCGA-A6-2686-01 19 37643831 37643831 T C ZNF585A Missense_Mutation p.K269E 0.36 deleterious(0.01) benign(0.073) TCGA-A6-2686-01 19 37838098 37838098 G A HKR1 Missense_Mutation p.V33M 0.06 tolerated(0.7) benign(0.152) TCGA-A6-2686-01 19 37838731 37838731 G A HKR1 Silent p.A90A 0.41 TCGA-A6-2686-01 19 3784848 3784848 G - MATK Frame_Shift_Del p.P37Lfs*125 0.43 TCGA-A6-2686-01 19 38375481 38375481 A G WDR87 3'Flank 0.24 TCGA-A6-2686-01 19 38376413 38376413 A G WDR87 Missense_Mutation p.M2594T 0.42 unknown(0) TCGA-A6-2686-01 19 38573485 38573485 G A SIPA1L3 Missense_Mutation p.C427Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 19 38610407 38610407 G A SIPA1L3 Missense_Mutation p.G918D 0.29 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 19 38746837 38746837 C T PPP1R14A Missense_Mutation p.R48Q 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-A6-2686-01 19 38799655 38799655 G - YIF1B Frame_Shift_Del p.R149Afs*49 0.34 TCGA-A6-2686-01 19 38881062 38881062 G - SPRED3 Frame_Shift_Del p.A43Pfs*24 0.34 TCGA-A6-2686-01 19 38937349 38937349 G - RYR1 Frame_Shift_Del p.G249Efs*16 0.39 TCGA-A6-2686-01 19 38980002 38980002 G A RYR1 Silent p.E1911E 0.24 TCGA-A6-2686-01 19 39051827 39051827 C T RYR1 Silent p.N4119N 0.41 TCGA-A6-2686-01 19 39087054 39087054 C T MAP4K1 Missense_Mutation p.A672T 0.30 tolerated(0.35) possibly_damaging(0.503) TCGA-A6-2686-01 19 39230734 39230734 C T CAPN12 Missense_Mutation p.R229H 0.54 deleterious(0.01) probably_damaging(0.937) TCGA-A6-2686-01 19 39330967 39330967 C - HNRNPL Frame_Shift_Del p.P337Hfs*58 0.26 TCGA-A6-2686-01 19 39412286 39412286 G A SARS2 Intron 0.11 TCGA-A6-2686-01 19 3982032 3982032 G A EEF2 Silent p.N270N 0.24 TCGA-A6-2686-01 19 39860622 39860622 G - SAMD4B Frame_Shift_Del p.G177Afs*5 0.54 TCGA-A6-2686-01 19 39876906 39876906 C G PAF1 Missense_Mutation p.E441Q 0.29 deleterious(0.03) unknown(0) TCGA-A6-2686-01 19 39915668 39915668 G - PLEKHG2 Frame_Shift_Del p.A1300Pfs*59 0.46 TCGA-A6-2686-01 19 40005866 40005866 C T SELV Missense_Mutation p.A5V 0.36 deleterious(0.01) unknown(0) TCGA-A6-2686-01 19 40195027 40195027 A G LGALS14 5'Flank 0.43 TCGA-A6-2686-01 19 4028537 4028537 A C PIAS4 Missense_Mutation p.Q204P 0.37 deleterious(0) probably_damaging(0.98) TCGA-A6-2686-01 19 4033438 4033438 C T PIAS4 Silent p.S334S 0.50 TCGA-A6-2686-01 19 40384114 40384114 C T FCGBP Missense_Mutation p.A3166T 0.17 possibly_damaging(0.787) TCGA-A6-2686-01 19 40395859 40395859 G A FCGBP Missense_Mutation p.T2513M 0.29 benign(0.433) TCGA-A6-2686-01 19 40398345 40398345 A G FCGBP Missense_Mutation p.C2208R 0.28 possibly_damaging(0.712) TCGA-A6-2686-01 19 40520561 40520561 A G ZNF546 Missense_Mutation p.T462A 0.40 deleterious(0.02) benign(0.173) TCGA-A6-2686-01 19 40581700 40581700 C T ZNF780A Missense_Mutation p.G218S 0.37 deleterious(0.02) probably_damaging(1) TCGA-A6-2686-01 19 40712038 40712038 G A MAP3K10 Missense_Mutation p.G470D 0.36 tolerated(0.43) benign(0.04) TCGA-A6-2686-01 19 40842279 40842279 C T C19orf47 Missense_Mutation p.G56S 0.40 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 19 40883969 40883969 C T PLD3 Silent p.G454G 0.23 TCGA-A6-2686-01 19 41089527 41089527 C T SHKBP1 Missense_Mutation p.R357C 0.10 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 19 41117849 41117849 C A LTBP4 Missense_Mutation p.P780H 0.21 tolerated(0.15) probably_damaging(0.993) TCGA-A6-2686-01 19 41133135 41133135 G A LTBP4 Missense_Mutation p.G1480D 0.50 tolerated(0.52) benign(0.031) TCGA-A6-2686-01 19 41179442 41179442 C T NUMBL Silent p.V281V 0.45 TCGA-A6-2686-01 19 41265447 41265447 G A SNRPA Missense_Mutation p.A120T 0.19 tolerated(0.41) benign(0.007) TCGA-A6-2686-01 19 41811722 41811722 C - HNRNPUL1 Frame_Shift_Del p.T804Lfs*111 0.44 TCGA-A6-2686-01 19 41812437 41812437 C T HNRNPUL1 Silent p.S846S 0.19 TCGA-A6-2686-01 19 41930478 41930478 G A BCKDHA Missense_Mutation p.G435R 0.28 tolerated(0.19) benign(0.065) TCGA-A6-2686-01 19 42351662 42351662 G A DMRTC2 Missense_Mutation p.G56S 0.59 deleterious(0.01) probably_damaging(1) TCGA-A6-2686-01 19 42354720 42354720 C - DMRTC2 Frame_Shift_Del p.N317Tfs*50 0.42 TCGA-A6-2686-01 19 42383610 42383610 C - CD79A Frame_Shift_Del p.R131Gfs*61 0.33 TCGA-A6-2686-01 19 42584603 42584605 CTT - ZNF574 In_Frame_Del p.F616del 0.17 TCGA-A6-2686-01 19 42797376 42797376 C - CIC Frame_Shift_Del p.P1248Hfs*54 0.38 TCGA-A6-2686-01 19 42848162 42848162 G A MEGF8 Silent p.P575P 0.50 TCGA-A6-2686-01 19 42855641 42855641 C A MEGF8 Silent p.T905T 0.12 TCGA-A6-2686-01 19 42911771 42911771 A G LIPE Missense_Mutation p.L610P 0.48 tolerated(0.06) possibly_damaging(0.617) TCGA-A6-2686-01 19 43093754 43093754 C T CEACAM8 Silent p.P186P 0.40 TCGA-A6-2686-01 19 43371923 43371923 T A PSG1 3'UTR 0.25 TCGA-A6-2686-01 19 43382154 43382154 C T PSG1 Missense_Mutation p.R114Q 0.16 tolerated(1) benign(0.001) TCGA-A6-2686-01 19 43858432 43858432 C T CD177 Silent p.H89H 0.17 TCGA-A6-2686-01 19 44377641 44377641 G T ZNF404 Missense_Mutation p.P242H 0.10 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 19 45127223 45127223 C T IGSF23 Silent p.N115N 0.11 TCGA-A6-2686-01 19 45260435 45260435 C T BCL3 Silent p.S227S 0.45 TCGA-A6-2686-01 19 4552597 4552597 G - SEMA6B Frame_Shift_Del p.R276Afs*11 0.32 TCGA-A6-2686-01 19 45543522 45543522 G A CLASRP Missense_Mutation p.D18N 0.44 deleterious(0.02) probably_damaging(0.953) TCGA-A6-2686-01 19 45556129 45556129 C - CLASRP Frame_Shift_Del p.P95Lfs*81 0.33 TCGA-A6-2686-01 19 45916703 45916703 T - ERCC1 3'UTR 0.29 TCGA-A6-2686-01 19 46094673 46094673 G A GPR4 Missense_Mutation p.A151V 0.53 tolerated(1) benign(0.116) TCGA-A6-2686-01 19 46195841 46195841 C T QPCTL 5'UTR 0.21 TCGA-A6-2686-01 19 46273868 46273868 A G DMPK Missense_Mutation p.S600P 0.32 tolerated_low_confidence(0.28) benign(0.002) TCGA-A6-2686-01 19 46317946 46317946 G A RSPH6A Silent p.H163H 0.43 TCGA-A6-2686-01 19 46318795 46318795 C - SYMPK 3'UTR 0.41 TCGA-A6-2686-01 19 463971 463971 A G ODF3L2 Missense_Mutation p.V248A 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-A6-2686-01 19 46915778 46915778 T C CCDC8 Missense_Mutation p.Y97C 0.42 probably_damaging(0.981) TCGA-A6-2686-01 19 4714287 4714287 C T DPP9 Missense_Mutation p.R40Q 0.47 tolerated(0.57) benign(0.002) TCGA-A6-2686-01 19 47231169 47231169 G - STRN4 Frame_Shift_Del p.Q379Sfs*26 0.33 TCGA-A6-2686-01 19 47258710 47258710 G A FKRP Translation_Start_Site p.M1? 0.45 deleterious(0) probably_damaging(0.914) TCGA-A6-2686-01 19 47280352 47280352 G A SLC1A5 Missense_Mutation p.A423V 0.44 deleterious(0.04) probably_damaging(1) TCGA-A6-2686-01 19 47587669 47587669 G T ZC3H4 Missense_Mutation p.P384H 0.34 unknown(0) TCGA-A6-2686-01 19 47844081 47844081 G A C5AR2 Missense_Mutation p.E9K 0.19 tolerated(0.08) benign(0.207) TCGA-A6-2686-01 19 47844420 47844420 G A C5AR2 Missense_Mutation p.V122I 0.37 tolerated(0.96) probably_damaging(0.998) TCGA-A6-2686-01 19 47969508 47969508 C T SLC8A2 Silent p.P51P 0.28 TCGA-A6-2686-01 19 48041502 48041502 G A ZNF541 Silent p.P1016P 0.50 TCGA-A6-2686-01 19 4817995 4817995 C T TICAM1 Missense_Mutation p.R132Q 0.25 tolerated(0.39) benign(0.011) TCGA-A6-2686-01 19 48734112 48734112 C T CARD8 Missense_Mutation p.G232S 0.40 deleterious(0.01) probably_damaging(1) TCGA-A6-2686-01 19 48879434 48879434 C A SYNGR4 Silent p.T188T 0.33 TCGA-A6-2686-01 19 48956129 48956129 C T GRWD1 Silent p.A396A 0.39 TCGA-A6-2686-01 19 48973874 48973874 G A CTC-273B12.7 Missense_Mutation p.R45Q 0.40 tolerated(0.13) benign(0.006) TCGA-A6-2686-01 19 49107101 49107101 C T FAM83E Missense_Mutation p.A276T 0.33 tolerated(0.29) benign(0.104) TCGA-A6-2686-01 19 49228211 49228212 AG - RASIP1 Frame_Shift_Del p.Y712Ffs*9 0.42 TCGA-A6-2686-01 19 49232614 49232614 C T RASIP1 Silent p.L471L 0.12 TCGA-A6-2686-01 19 49436963 49436963 G A DHDH 5'UTR 0.33 TCGA-A6-2686-01 19 49510303 49510303 G A RUVBL2 Silent p.T98T 0.16 TCGA-A6-2686-01 19 49517771 49517771 C T RUVBL2 Silent p.H344H 0.40 TCGA-A6-2686-01 19 49642974 49642974 C T PPFIA3 Missense_Mutation p.A709V 0.35 tolerated(0.11) benign(0.004) TCGA-A6-2686-01 19 49671555 49671555 G A TRPM4 Missense_Mutation p.G163S 0.30 tolerated(0.23) possibly_damaging(0.876) TCGA-A6-2686-01 19 49950288 49950288 G T PIH1D1 Missense_Mutation p.P227H 0.10 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 19 50098808 50098808 C - PRR12 Frame_Shift_Del p.P408Hfs*62 0.20 TCGA-A6-2686-01 19 50124844 50124844 G A PRR12 Missense_Mutation p.V1896I 0.40 unknown(0) TCGA-A6-2686-01 19 50305117 50305117 G T AP2A1 Missense_Mutation p.G642W 0.17 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 19 50312827 50312827 G T FUZ Silent p.A166A 0.30 TCGA-A6-2686-01 19 50333404 50333404 G A MED25 Missense_Mutation p.A250T 0.43 tolerated(0.48) possibly_damaging(0.682) TCGA-A6-2686-01 19 50393490 50393490 G A IL4I1 Missense_Mutation p.R403C 0.21 deleterious(0.02) probably_damaging(1) TCGA-A6-2686-01 19 50435750 50435750 C - ATF5 Frame_Shift_Del p.G86Afs*32 0.53 TCGA-A6-2686-01 19 5047489 5047489 C T KDM4B Silent p.D145D 0.56 TCGA-A6-2686-01 19 50549297 50549298 CA - ZNF473 Frame_Shift_Del p.H533Rfs*30 0.33 TCGA-A6-2686-01 19 50549542 50549542 T C ZNF473 Silent p.S614S 0.45 TCGA-A6-2686-01 19 50771494 50771494 G - MYH14 Frame_Shift_Del p.R970Gfs*44 0.39 TCGA-A6-2686-01 19 50789917 50789917 C G MYH14 Missense_Mutation p.A1573G 0.28 tolerated(0.05) benign(0.005) TCGA-A6-2686-01 19 50826907 50826907 G A KCNC3 Missense_Mutation p.R435C 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 19 50868867 50868867 T C NAPSA Silent p.P4P 0.29 TCGA-A6-2686-01 19 50905324 50905324 G - POLD1 Frame_Shift_Del p.R180Gfs*3 0.40 TCGA-A6-2686-01 19 50939883 50939883 G A MYBPC2 Missense_Mutation p.V119M 0.40 deleterious(0) benign(0.347) TCGA-A6-2686-01 19 51017903 51017903 G A ASPDH 5'Flank 0.55 TCGA-A6-2686-01 19 51021113 51021113 G A LRRC4B Silent p.N619N 0.15 TCGA-A6-2686-01 19 51021614 51021614 G A LRRC4B Silent p.N452N 0.44 TCGA-A6-2686-01 19 51022204 51022204 G A LRRC4B Missense_Mutation p.R256C 0.37 deleterious(0) probably_damaging(0.965) TCGA-A6-2686-01 19 51022276 51022276 C A LRRC4B Nonsense_Mutation p.E232* 0.37 TCGA-A6-2686-01 19 51165557 51165557 C T SHANK1 Missense_Mutation p.A2051T 0.36 unknown(0) TCGA-A6-2686-01 19 51169923 51169923 C T SHANK1 Missense_Mutation p.S1765N 0.41 unknown(0) TCGA-A6-2686-01 19 51192559 51192559 G - SHANK1 Intron 0.57 TCGA-A6-2686-01 19 5131312 5131312 C A KDM4B Missense_Mutation p.P514H 0.42 benign(0.184) TCGA-A6-2686-01 19 51844883 51844883 G A VSIG10L Missense_Mutation p.T140I 0.41 tolerated_low_confidence(0.12) benign(0.03) TCGA-A6-2686-01 19 51920076 51920076 C T SIGLEC10 Missense_Mutation p.A184T 0.11 tolerated(0.09) benign(0.445) TCGA-A6-2686-01 19 51957989 51957989 C - SIGLEC8 Frame_Shift_Del p.G366Efs*18 0.20 TCGA-A6-2686-01 19 52003625 52003625 C T SIGLEC12 Intron 0.12 TCGA-A6-2686-01 19 52133168 52133168 C T SIGLEC5 Silent p.T113T 0.27 TCGA-A6-2686-01 19 5214696 5214696 C T PTPRS Missense_Mutation p.C1457Y 0.46 deleterious(0) benign(0.217) TCGA-A6-2686-01 19 5238995 5238995 G A PTPRS Missense_Mutation p.A595V 0.45 deleterious(0.03) possibly_damaging(0.498) TCGA-A6-2686-01 19 52941931 52941931 G A ZNF534 Silent p.G419G 0.39 TCGA-A6-2686-01 19 53385007 53385007 G A ZNF320 Silent p.D124D 0.09 TCGA-A6-2686-01 19 53472180 53472180 A G ZNF702P RNA 0.48 TCGA-A6-2686-01 19 53573288 53573288 G A ZNF160 Missense_Mutation p.R167C 0.06 tolerated(0.17) benign(0.18) TCGA-A6-2686-01 19 53668580 53668580 T C ZNF665 Missense_Mutation p.N388S 0.47 tolerated(1) benign(0.018) TCGA-A6-2686-01 19 53995702 53995702 G A ZNF813 3'UTR 0.38 TCGA-A6-2686-01 19 54377450 54377450 C T MYADM Silent p.L223L 0.09 TCGA-A6-2686-01 19 54545423 54545423 C A VSTM1 Missense_Mutation p.R172I 0.11 deleterious(0) probably_damaging(0.96) TCGA-A6-2686-01 19 54653383 54653383 C T CNOT3 Missense_Mutation p.P499S 0.23 tolerated(0.56) possibly_damaging(0.641) TCGA-A6-2686-01 19 54742725 54742726 - C LILRA6 3'UTR 0.24 TCGA-A6-2686-01 19 54754577 54754577 G - LILRB5 3'UTR 0.33 TCGA-A6-2686-01 19 54760413 54760413 G A LILRB5 Silent p.C98C 0.08 TCGA-A6-2686-01 19 54802141 54802141 C A LILRA3 Missense_Mutation p.Q349H 0.25 tolerated(0.1) benign(0.033) TCGA-A6-2686-01 19 54818781 54818781 C T LILRA5 Missense_Mutation p.G273S 0.09 tolerated(0.07) possibly_damaging(0.57) TCGA-A6-2686-01 19 54848698 54848699 - G LILRA4 Frame_Shift_Ins p.S309Qfs*2 0.38 TCGA-A6-2686-01 19 54967154 54967154 G A LENG8 Missense_Mutation p.R345Q 0.33 tolerated(0.14) benign(0.005) TCGA-A6-2686-01 19 55494003 55494003 C T NLRP2 Missense_Mutation p.P313S 0.14 deleterious(0.03) probably_damaging(1) TCGA-A6-2686-01 19 55558766 55558766 C T RDH13 Missense_Mutation p.S250N 0.24 tolerated(0.47) benign(0.013) TCGA-A6-2686-01 19 55597880 55597880 G A EPS8L1 Missense_Mutation p.E591K 0.34 tolerated(0.89) benign(0.009) TCGA-A6-2686-01 19 55673013 55673013 C T DNAAF3 Missense_Mutation p.G289R 0.31 tolerated(0.05) possibly_damaging(0.867) TCGA-A6-2686-01 19 55870669 55870670 - G FAM71E2 Frame_Shift_Ins p.T523Hfs*43 0.29 TCGA-A6-2686-01 19 55994461 55994461 C T ZNF628 Missense_Mutation p.A634V 0.09 deleterious(0.04) probably_damaging(0.971) TCGA-A6-2686-01 19 56443517 56443517 C T NLRP13 Missense_Mutation p.R54H 0.10 tolerated(0.16) benign(0.001) TCGA-A6-2686-01 19 56443533 56443533 G - NLRP13 Frame_Shift_Del p.Q49Rfs*12 0.33 TCGA-A6-2686-01 19 56481926 56481926 G A NLRP8 Missense_Mutation p.A800T 0.42 tolerated(0.13) benign(0.236) TCGA-A6-2686-01 19 56539043 56539043 C T NLRP5 Nonsense_Mutation p.Q482* 0.32 TCGA-A6-2686-01 19 56658434 56658434 G A ZNF444 Missense_Mutation p.E52K 0.36 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 19 56953627 56953628 - T ZNF667 Frame_Shift_Ins p.I246Nfs*27 0.25 TCGA-A6-2686-01 19 56972075 56972075 C T ZNF667 Missense_Mutation p.R48Q 0.47 tolerated(0.91) benign(0.001) TCGA-A6-2686-01 19 57089572 57089572 C T ZNF470 Missense_Mutation p.P592L 0.38 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 19 57134689 57134689 A - ZNF71 3'UTR 0.30 TCGA-A6-2686-01 19 57175758 57175758 C T ZNF835 Missense_Mutation p.R270H 0.36 deleterious(0) possibly_damaging(0.516) TCGA-A6-2686-01 19 57328490 57328490 G A PEG3 Silent p.T440T 0.22 TCGA-A6-2686-01 19 57773947 57773947 G A CTC-444N24.8 RNA 0.45 TCGA-A6-2686-01 19 57932926 57932927 - A ZNF17 3'UTR 0.30 TCGA-A6-2686-01 19 58058212 58058212 A - ZNF550 3'UTR 0.77 TCGA-A6-2686-01 19 58101682 58101682 G A ZIK1 Missense_Mutation p.R168H 0.33 tolerated(0.13) benign(0.057) TCGA-A6-2686-01 19 58102500 58102500 G T ZIK1 Nonsense_Mutation p.G441* 0.18 TCGA-A6-2686-01 19 58232391 58232391 C T ZNF671 Missense_Mutation p.G355S 0.12 tolerated(0.93) benign(0.153) TCGA-A6-2686-01 19 58238765 58238765 G A ZNF671 Silent p.S44S 0.15 TCGA-A6-2686-01 19 58806922 58806922 A G ZNF8 3'UTR 0.18 TCGA-A6-2686-01 19 58850615 58850615 A T ZSCAN22 Missense_Mutation p.S467C 0.27 deleterious(0.02) benign(0.1) TCGA-A6-2686-01 19 58858845 58858845 C T A1BG Missense_Mutation p.A452T 0.50 tolerated(0.15) benign(0.131) TCGA-A6-2686-01 19 58945937 58945937 C T ZNF132 Missense_Mutation p.V292M 0.27 tolerated(0.09) benign(0.197) TCGA-A6-2686-01 19 5903775 5903775 C T FUT5 5'UTR 0.54 TCGA-A6-2686-01 19 59067538 59067538 C T UBE2M Missense_Mutation p.R157Q 0.46 tolerated(0.14) possibly_damaging(0.787) TCGA-A6-2686-01 19 59067548 59067548 G A UBE2M Nonsense_Mutation p.Q154* 0.45 TCGA-A6-2686-01 19 59074574 59074574 C T MZF1 Missense_Mutation p.R357H 0.68 tolerated(0.29) benign(0.002) TCGA-A6-2686-01 19 6222268 6222268 G A MLLT1 Missense_Mutation p.S325L 0.17 tolerated(0.27) benign(0.32) TCGA-A6-2686-01 19 6270641 6270641 C T MLLT1 Missense_Mutation p.V48M 0.33 deleterious(0) probably_damaging(0.991) TCGA-A6-2686-01 19 6664927 6664927 G A TNFSF14 3'UTR 0.26 TCGA-A6-2686-01 19 7570957 7570957 C A C19orf45 Silent p.T371T 0.21 TCGA-A6-2686-01 19 7589865 7589865 C - MCOLN1 Frame_Shift_Del p.N19Tfs*32 0.29 TCGA-A6-2686-01 19 7678023 7678024 - G CAMSAP3 Frame_Shift_Ins p.V910Gfs*10 0.27 TCGA-A6-2686-01 19 7682262 7682262 G A CAMSAP3 Missense_Mutation p.R1115H 0.30 tolerated(0.06) probably_damaging(0.984) TCGA-A6-2686-01 19 7688621 7688621 C T XAB2 Missense_Mutation p.R372Q 0.36 tolerated(0.58) benign(0.007) TCGA-A6-2686-01 19 7747433 7747433 C T TRAPPC5 Silent p.F98F 0.27 TCGA-A6-2686-01 19 7747505 7747505 G A TRAPPC5 Silent p.P122P 0.24 TCGA-A6-2686-01 19 7975352 7975352 C T MAP2K7 Silent p.S154S 0.38 TCGA-A6-2686-01 19 7987105 7987105 T C SNAPC2 Silent p.P186P 0.25 TCGA-A6-2686-01 19 8032523 8032523 T C ELAVL1 Silent p.A194A 0.42 TCGA-A6-2686-01 19 8038612 8038612 T C ELAVL1 Missense_Mutation p.T143A 0.50 tolerated(0.05) benign(0.006) TCGA-A6-2686-01 19 8046013 8046014 - CT ELAVL1 Frame_Shift_Ins p.A77Efs*6 0.27 TCGA-A6-2686-01 19 810594 810594 C T PTBP1 Silent p.G505G 0.14 TCGA-A6-2686-01 19 8171027 8171027 C T FBN3 Missense_Mutation p.G1593D 0.38 deleterious(0.02) possibly_damaging(0.835) TCGA-A6-2686-01 19 8190853 8190853 C T FBN3 Missense_Mutation p.C885Y 0.52 deleterious(0) probably_damaging(0.949) TCGA-A6-2686-01 19 8212367 8212367 C T FBN3 5'UTR 0.37 TCGA-A6-2686-01 19 8389616 8389616 C T KANK3 Silent p.A727A 0.45 TCGA-A6-2686-01 19 8464844 8464844 G A RAB11B Silent p.V46V 0.22 TCGA-A6-2686-01 19 8467036 8467036 C T RAB11B Silent p.N101N 0.31 TCGA-A6-2686-01 19 873461 873461 G A MED16 Silent p.S631S 0.30 TCGA-A6-2686-01 19 875329 875329 C T MED16 Silent p.S562S 0.19 TCGA-A6-2686-01 19 9016716 9016716 C T MUC16 Missense_Mutation p.G12674E 0.13 possibly_damaging(0.782) TCGA-A6-2686-01 19 9058236 9058236 G A MUC16 Missense_Mutation p.T9737I 0.21 unknown(0) TCGA-A6-2686-01 19 9089841 9089841 C T MUC16 Silent p.T658T 0.23 TCGA-A6-2686-01 19 9296617 9296617 C A OR7D2 Missense_Mutation p.H54N 0.14 deleterious_low_confidence(0.03) benign(0.039) TCGA-A6-2686-01 19 9452479 9452479 A G ZNF559 Missense_Mutation p.T118A 0.43 tolerated(0.08) possibly_damaging(0.739) TCGA-A6-2686-01 19 9524058 9524058 T C ZNF266 Missense_Mutation p.T515A 0.24 deleterious(0) possibly_damaging(0.515) TCGA-A6-2686-01 19 9646912 9646912 G A ZNF426 5'UTR 0.33 TCGA-A6-2686-01 1 103345307 103345307 C A COL11A1 Nonsense_Mutation p.G1736* 0.35 TCGA-A6-2686-01 1 10438481 10438481 A - KIF1B 3'Flank 0.19 TCGA-A6-2686-01 1 107599370 107599370 G - PRMT6 Frame_Shift_Del p.G13Afs*48 0.38 TCGA-A6-2686-01 1 108507463 108507463 C T VAV3 Nonsense_Mutation p.W10* 0.25 TCGA-A6-2686-01 1 108994851 108994851 G T NBPF6 Missense_Mutation p.R73M 0.19 deleterious(0.03) possibly_damaging(0.887) TCGA-A6-2686-01 1 109200164 109200164 G A HENMT1 Missense_Mutation p.P20L 0.35 tolerated(0.37) benign(0.003) TCGA-A6-2686-01 1 109655253 109655253 C A C1orf194 Intron 0.42 TCGA-A6-2686-01 1 109714577 109714577 C A KIAA1324 Missense_Mutation p.S186Y 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-A6-2686-01 1 109816066 109816068 AAG - CELSR2 In_Frame_Del p.K2842del 0.34 TCGA-A6-2686-01 1 110128869 110128869 C T GNAI3 Nonsense_Mutation p.R208* 0.19 TCGA-A6-2686-01 1 11015071 11015071 C T C1orf127 Silent p.P317P 0.14 TCGA-A6-2686-01 1 110656320 110656320 C T UBL4B 3'UTR 0.15 TCGA-A6-2686-01 1 111494023 111494023 C T LRIF1 Missense_Mutation p.V495I 0.38 tolerated(0.36) unknown(0) TCGA-A6-2686-01 1 11151556 11151556 G A EXOSC10 Silent p.N157N 0.27 TCGA-A6-2686-01 1 111957478 111957478 G A OVGP1 Missense_Mutation p.P549S 0.21 deleterious_low_confidence(0.03) benign(0.133) TCGA-A6-2686-01 1 11300580 11300580 G A MTOR Silent p.Y522Y 0.50 TCGA-A6-2686-01 1 113264962 113264962 C T FAM19A3 Missense_Mutation p.T36I 0.18 deleterious(0.04) benign(0.184) TCGA-A6-2686-01 1 114973421 114973421 T A TRIM33 Missense_Mutation p.E385V 0.34 deleterious(0) probably_damaging(0.957) TCGA-A6-2686-01 1 1153038 1153038 C T SDF4 Missense_Mutation p.A315T 0.45 deleterious(0.02) probably_damaging(1) TCGA-A6-2686-01 1 116577899 116577899 A G SLC22A15 Missense_Mutation p.I346V 0.39 tolerated(1) benign(0.003) TCGA-A6-2686-01 1 11779851 11779851 C T DRAXIN 3'UTR 0.25 TCGA-A6-2686-01 1 118008969 118008969 G A MAN1A2 Missense_Mutation p.R363Q 0.52 deleterious(0.01) probably_damaging(0.988) TCGA-A6-2686-01 1 118492665 118492666 TG - WDR3 Frame_Shift_Del p.V555Qfs*24 0.33 TCGA-A6-2686-01 1 118581942 118581944 CTT - SPAG17 In_Frame_Del p.E1097del 0.12 TCGA-A6-2686-01 1 11894401 11894401 C T CLCN6 Silent p.I545I 0.25 TCGA-A6-2686-01 1 120438116 120438116 T - ADAM30 Frame_Shift_Del p.S282Vfs*3 0.25 TCGA-A6-2686-01 1 12335954 12335954 C - VPS13D Frame_Shift_Del p.L772Wfs*37 0.19 TCGA-A6-2686-01 1 1247451 1247451 C T CPSF3L Missense_Mutation p.A568T 0.21 tolerated_low_confidence(0.44) benign(0.001) TCGA-A6-2686-01 1 1248233 1248233 C T CPSF3L Missense_Mutation p.V416M 0.21 deleterious(0.02) possibly_damaging(0.579) TCGA-A6-2686-01 1 12835746 12835746 G A PRAMEF12 Nonsense_Mutation p.W116* 0.08 TCGA-A6-2686-01 1 1289842 1289842 C T MXRA8 Missense_Mutation p.E333K 0.49 deleterious(0) possibly_damaging(0.766) TCGA-A6-2686-01 1 12979979 12979979 G A PRAMEF7 Missense_Mutation p.A391T 0.21 probably_damaging(0.999) TCGA-A6-2686-01 1 143767816 143767816 G A PPIAL4G Silent p.T11T 0.24 TCGA-A6-2686-01 1 144915479 144915479 A C PDE4DIP Missense_Mutation p.L649R 0.14 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 145457027 145457027 C T POLR3GL Silent p.E178E 0.12 TCGA-A6-2686-01 1 145475278 145475278 C T ANKRD34A 3'UTR 0.51 TCGA-A6-2686-01 1 145704059 145704065 CTGACTT - CD160 Frame_Shift_Del p.K118Vfs*21 0.21 TCGA-A6-2686-01 1 147087695 147087695 C T BCL9 Missense_Mutation p.A218V 0.23 tolerated(0.41) benign(0) TCGA-A6-2686-01 1 147230453 147230453 G A GJA5 Silent p.T298T 0.27 TCGA-A6-2686-01 1 147380963 147380963 C A GJA8 Missense_Mutation p.A294D 0.56 tolerated(0.08) benign(0.056) TCGA-A6-2686-01 1 149897772 149897772 T C SF3B4 Missense_Mutation p.H290R 0.18 tolerated(0.3) unknown(0) TCGA-A6-2686-01 1 150443735 150443735 C - RPRD2 Frame_Shift_Del p.P772Lfs*42 0.16 TCGA-A6-2686-01 1 150445305 150445313 CTCCTCCAC TCCTCCA RPRD2 Frame_Shift_Del p.P1294Lfs*6 0.09 TCGA-A6-2686-01 1 150445520 150445520 C T RPRD2 Nonsense_Mutation p.R1366* 0.44 TCGA-A6-2686-01 1 151111921 151111922 CA - SEMA6C Frame_Shift_Del p.A112Cfs*8 0.29 TCGA-A6-2686-01 1 151234660 151234660 G A PSMD4 Missense_Mutation p.R17Q 0.25 deleterious(0.02) possibly_damaging(0.684) TCGA-A6-2686-01 1 151749006 151749006 G T TDRKH Missense_Mutation p.P318H 0.30 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 151867593 151867593 C T THEM4 Silent p.L59L 0.56 TCGA-A6-2686-01 1 151993674 151993674 G A NBPF18P RNA 0.18 TCGA-A6-2686-01 1 152281569 152281569 A G FLG Silent p.S1931S 0.38 TCGA-A6-2686-01 1 152281980 152281980 G A FLG Silent p.H1794H 0.27 TCGA-A6-2686-01 1 152671477 152671477 G A LCE2A Missense_Mutation p.A34T 0.08 tolerated(0.43) unknown(0) TCGA-A6-2686-01 1 152800020 152800020 C - LCE1A Frame_Shift_Del p.T26Lfs*44 0.20 TCGA-A6-2686-01 1 153923854 153923854 C T CRTC2 Missense_Mutation p.R429H 0.20 tolerated(0.11) probably_damaging(0.984) TCGA-A6-2686-01 1 154543677 154543677 G A CHRNB2 Missense_Mutation p.M126I 0.25 tolerated(0.1) benign(0.009) TCGA-A6-2686-01 1 154573784 154573784 C A ADAR Missense_Mutation p.G445V 0.23 deleterious(0.03) benign(0.184) TCGA-A6-2686-01 1 154574833 154574833 C A ADAR Missense_Mutation p.R95S 0.22 deleterious(0.03) benign(0.006) TCGA-A6-2686-01 1 154966129 154966129 C A LENEP Missense_Mutation p.L16I 0.50 deleterious_low_confidence(0.05) benign(0.005) TCGA-A6-2686-01 1 154987359 154987359 G - ZBTB7B Frame_Shift_Del p.G110Vfs*19 0.30 TCGA-A6-2686-01 1 154991112 154991112 C T DCST2 Missense_Mutation p.A744T 0.13 tolerated_low_confidence(0.31) benign(0.006) TCGA-A6-2686-01 1 155177614 155177615 - A THBS3 Frame_Shift_Ins p.T19Hfs*11 0.40 TCGA-A6-2686-01 1 155292073 155292075 CTT - RUSC1 In_Frame_Del p.S173del 0.32 TCGA-A6-2686-01 1 155300224 155300224 T C RUSC1 Silent p.A857A 0.14 TCGA-A6-2686-01 1 155448157 155448157 T C ASH1L Missense_Mutation p.M1502V 0.11 tolerated_low_confidence(0.53) benign(0.013) TCGA-A6-2686-01 1 155746270 155746270 G A GON4L Silent p.H698H 0.19 TCGA-A6-2686-01 1 155823575 155823575 A - GON4L 5'UTR 0.33 TCGA-A6-2686-01 1 156046704 156046704 G T MEX3A Silent p.A408A 0.41 TCGA-A6-2686-01 1 156282003 156282003 C A CCT3 Silent p.G328G 0.63 TCGA-A6-2686-01 1 156351923 156351923 C T RHBG Missense_Mutation p.P348L 0.11 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 156642327 156642327 C A NES Missense_Mutation p.E551D 0.17 tolerated(0.08) benign(0.02) TCGA-A6-2686-01 1 156939121 156939121 C - ARHGEF11 Frame_Shift_Del p.D260Tfs*18 0.36 TCGA-A6-2686-01 1 15793939 15793939 G A CELA2A Missense_Mutation p.G233D 0.29 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 158152021 158152021 G A CD1D Silent p.V176V 0.21 TCGA-A6-2686-01 1 158651364 158651364 G T SPTA1 Missense_Mutation p.Q162K 0.37 deleterious(0.04) benign(0.042) TCGA-A6-2686-01 1 159024690 159024690 A - IFI16 Frame_Shift_Del 0.24 TCGA-A6-2686-01 1 159163232 159163232 C T CADM3 Silent p.I168I 0.22 TCGA-A6-2686-01 1 159169588 159169588 G A CADM3 Missense_Mutation p.G368S 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-A6-2686-01 1 159921375 159921375 A T SLAMF9 3'UTR 0.29 TCGA-A6-2686-01 1 1599801 1599801 G A SLC35E2B Silent p.Y315Y 0.08 TCGA-A6-2686-01 1 160160668 160160668 T C CASQ1 Missense_Mutation p.Y43H 0.50 deleterious(0.05) benign(0.336) TCGA-A6-2686-01 1 160324043 160324043 G A NCSTN Missense_Mutation p.V439I 0.35 tolerated(0.19) probably_damaging(0.924) TCGA-A6-2686-01 1 160342212 160342213 - G NHLH1 3'UTR 0.34 TCGA-A6-2686-01 1 16046395 16046395 C T PLEKHM2 Missense_Mutation p.A211V 0.45 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-A6-2686-01 1 160604431 160604431 C T SLAMF1 Silent p.P224P 0.29 TCGA-A6-2686-01 1 161088939 161088939 T C NIT1 Silent p.A38A 0.32 TCGA-A6-2686-01 1 161089977 161089977 C A NIT1 Silent p.T224T 0.14 TCGA-A6-2686-01 1 161161951 161161951 C T ADAMTS4 Missense_Mutation p.R664H 0.19 tolerated(0.41) benign(0.015) TCGA-A6-2686-01 1 161332445 161332445 C T SDHC 3'UTR 0.26 TCGA-A6-2686-01 1 161496647 161496647 A G HSPA6 3'UTR 0.43 TCGA-A6-2686-01 1 161600924 161600924 G T FCGR3B Silent p.L23L 0.39 TCGA-A6-2686-01 1 16262487 16262487 C A SPEN Missense_Mutation p.P3251H 0.19 probably_damaging(0.998) TCGA-A6-2686-01 1 16342059 16342059 G T HSPB7 3'UTR 0.29 TCGA-A6-2686-01 1 16377071 16377071 C T CLCNKB Silent p.S343S 0.14 TCGA-A6-2686-01 1 16461618 16461618 G T EPHA2 Missense_Mutation p.P499T 0.17 deleterious(0.01) probably_damaging(1) TCGA-A6-2686-01 1 16462225 16462225 C T EPHA2 Silent p.S451S 0.48 TCGA-A6-2686-01 1 16785425 16785425 G A NECAP2 Silent p.A252A 0.28 TCGA-A6-2686-01 1 168054869 168054869 C - GPR161 Frame_Shift_Del p.G517Afs*13 0.33 TCGA-A6-2686-01 1 170633401 170633401 G A PRRX1 Silent p.A14A 0.11 TCGA-A6-2686-01 1 171077357 171077357 G A FMO3 Missense_Mutation p.E208K 0.23 tolerated(1) benign(0.005) TCGA-A6-2686-01 1 171753545 171753545 C T METTL13 Silent p.C273C 0.48 TCGA-A6-2686-01 1 172558181 172558181 G A SUCO Missense_Mutation p.R647H 0.16 tolerated(0.29) benign(0.005) TCGA-A6-2686-01 1 17257079 17257079 G A CROCC Missense_Mutation p.R280H 0.13 benign(0.076) TCGA-A6-2686-01 1 17266528 17266528 C T CROCC Missense_Mutation p.A583V 0.15 possibly_damaging(0.888) TCGA-A6-2686-01 1 17316764 17316764 G A ATP13A2 Missense_Mutation p.A757V 0.20 deleterious(0) probably_damaging(0.962) TCGA-A6-2686-01 1 173808569 173808569 A G DARS2 Missense_Mutation p.Q302R 0.27 tolerated(0.42) benign(0.005) TCGA-A6-2686-01 1 173886486 173886486 G A SERPINC1 5'UTR 0.50 TCGA-A6-2686-01 1 173952700 173952702 CTT - RC3H1 In_Frame_Del p.E149del 0.44 TCGA-A6-2686-01 1 176845738 176845738 C T ASTN1 Missense_Mutation p.R1133H 0.27 tolerated(0.53) probably_damaging(0.993) TCGA-A6-2686-01 1 179112190 179112190 A G ABL2 Intron 0.24 TCGA-A6-2686-01 1 180885450 180885450 A G KIAA1614 Missense_Mutation p.R71G 0.18 tolerated(0.33) benign(0.003) TCGA-A6-2686-01 1 180945687 180945687 G A STX6 3'UTR 0.39 TCGA-A6-2686-01 1 180971792 180971792 C T STX6 Missense_Mutation p.E84K 0.45 deleterious(0.01) probably_damaging(0.924) TCGA-A6-2686-01 1 182545500 182545500 T - RNASEL Frame_Shift_Del p.M644* 0.11 TCGA-A6-2686-01 1 182555300 182555300 G A RNASEL Silent p.D214D 0.29 TCGA-A6-2686-01 1 182920471 182920471 A - SHCBP1L Frame_Shift_Del p.F179Lfs*8 0.35 TCGA-A6-2686-01 1 183196823 183196823 G - LAMC2 Frame_Shift_Del p.V488Sfs*24 0.30 TCGA-A6-2686-01 1 183534893 183534893 C T NCF2 Missense_Mutation p.D316N 0.21 tolerated(0.24) benign(0.011) TCGA-A6-2686-01 1 183617372 183617372 G A APOBEC4 Missense_Mutation p.P182L 0.46 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 185159775 185159775 G A SWT1 Splice_Site p.X508_splice 0.19 TCGA-A6-2686-01 1 185891604 185891604 A - HMCN1 Frame_Shift_Del p.T334Qfs*26 0.21 TCGA-A6-2686-01 1 185897793 185897793 G A HMCN1 Missense_Mutation p.V516I 0.24 possibly_damaging(0.897) TCGA-A6-2686-01 1 186916048 186916048 G A PLA2G4A Missense_Mutation p.V407I 0.26 tolerated(0.45) benign(0.164) TCGA-A6-2686-01 1 18957937 18957937 G T PAX7 5'UTR 0.36 TCGA-A6-2686-01 1 190067888 190067888 G T BRINP3 Missense_Mutation p.L521I 0.09 tolerated(0.07) probably_damaging(0.991) TCGA-A6-2686-01 1 19609230 19609230 G A AKR7A3 Missense_Mutation p.R331C 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 1 196749040 196749040 G A CFHR3 Missense_Mutation p.A123T 0.33 tolerated(0.23) benign(0.008) TCGA-A6-2686-01 1 196759035 196759037 AAG - CFHR3 Intron 0.22 TCGA-A6-2686-01 1 197059469 197059470 - T ASPM Frame_Shift_Ins p.I3229Nfs*2 0.32 TCGA-A6-2686-01 1 197070312 197070312 C T ASPM Missense_Mutation p.R2690Q 0.36 tolerated(0.35) benign(0.013) TCGA-A6-2686-01 1 197145703 197145703 T - ZBTB41 Frame_Shift_Del p.I624Yfs*88 0.22 TCGA-A6-2686-01 1 200311852 200311852 T A LINC00862 RNA 0.45 TCGA-A6-2686-01 1 200378318 200378318 G A ZNF281 Silent p.G172G 0.49 TCGA-A6-2686-01 1 200575023 200575023 C T KIF14 Splice_Site p.X536_splice 0.26 TCGA-A6-2686-01 1 200587476 200587476 T C KIF14 Missense_Mutation p.K126E 0.36 deleterious(0.05) benign(0.036) TCGA-A6-2686-01 1 200954056 200954056 C T KIF21B Missense_Mutation p.R1245Q 0.27 tolerated(0.14) benign(0.435) TCGA-A6-2686-01 1 201182151 201182151 A G IGFN1 Silent p.S2710S 0.40 TCGA-A6-2686-01 1 201293683 201293683 G A PKP1 Missense_Mutation p.R624H 0.33 deleterious(0) probably_damaging(0.939) TCGA-A6-2686-01 1 201755595 201755595 G A NAV1 Missense_Mutation p.R962Q 0.42 deleterious(0.03) probably_damaging(1) TCGA-A6-2686-01 1 202406974 202406974 C T PPP1R12B Missense_Mutation p.P427L 0.22 tolerated(0.06) benign(0.001) TCGA-A6-2686-01 1 202992187 202992188 - G TMEM183A 3'UTR 0.16 TCGA-A6-2686-01 1 203452549 203452549 C - PRELP Frame_Shift_Del p.P81Lfs*61 0.36 TCGA-A6-2686-01 1 20412667 20412667 C T PLA2G5 Silent p.Y44Y 0.26 TCGA-A6-2686-01 1 204948152 204948152 C T NFASC Missense_Mutation p.R645W 0.17 deleterious(0) probably_damaging(0.984) TCGA-A6-2686-01 1 205028268 205028268 C T CNTN2 Missense_Mutation p.R182C 0.29 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 205225528 205225530 AGG - TMCC2 Intron 0.39 TCGA-A6-2686-01 1 205548961 205548961 G A MFSD4 Missense_Mutation p.V105M 0.54 deleterious(0) probably_damaging(0.995) TCGA-A6-2686-01 1 206574913 206574913 C T SRGAP2 Missense_Mutation p.A236V 0.08 deleterious(0.01) benign(0.433) TCGA-A6-2686-01 1 20678633 20678633 T C VWA5B1 Missense_Mutation p.S1042P 0.48 tolerated(0.43) benign(0.004) TCGA-A6-2686-01 1 207131941 207131941 C T FCAMR Missense_Mutation p.V552M 0.20 tolerated(0.34) benign(0.062) TCGA-A6-2686-01 1 207237143 207237143 A G PFKFB2 Missense_Mutation p.D159G 0.15 possibly_damaging(0.79) TCGA-A6-2686-01 1 2075669 2075669 C T PRKCZ Silent p.C147C 0.54 TCGA-A6-2686-01 1 20827911 20827911 T A MUL1 Missense_Mutation p.N111Y 0.27 deleterious(0.01) probably_damaging(1) TCGA-A6-2686-01 1 209805980 209805980 T A LAMB3 Missense_Mutation p.D257V 0.28 deleterious(0) probably_damaging(0.956) TCGA-A6-2686-01 1 210577902 210577902 G A HHAT Missense_Mutation p.C189Y 0.15 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 211486899 211486899 C T RCOR3 Missense_Mutation p.P484L 0.38 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 1 2118543 2118543 G A C1orf86 3'Flank 0.26 TCGA-A6-2686-01 1 2125455 2125455 C T C1orf86 Silent p.L60L 0.59 TCGA-A6-2686-01 1 213168310 213168310 T C ANGEL2 3'UTR 0.47 TCGA-A6-2686-01 1 214169900 214169900 G A PROX1 Missense_Mutation p.A8T 0.19 tolerated_low_confidence(0.29) benign(0) TCGA-A6-2686-01 1 214170829 214170829 G A PROX1 Silent p.E317E 0.41 TCGA-A6-2686-01 1 214557695 214557695 C T PTPN14 Silent p.G501G 0.24 TCGA-A6-2686-01 1 214818857 214818858 - A CENPF Frame_Shift_Ins p.M1984Nfs*9 0.08 TCGA-A6-2686-01 1 215802197 215802197 T C USH2A Missense_Mutation p.N5160D 0.22 benign(0) TCGA-A6-2686-01 1 215844539 215844539 G T USH2A Silent p.P4636P 0.45 TCGA-A6-2686-01 1 216692684 216692684 T C ESRRG Silent p.V326V 0.68 TCGA-A6-2686-01 1 217793522 217793522 G A GPATCH2 Missense_Mutation p.R126C 0.27 deleterious(0) possibly_damaging(0.88) TCGA-A6-2686-01 1 21930283 21930283 C T RAP1GAP Intron 0.16 TCGA-A6-2686-01 1 21935418 21935418 G A RAP1GAP Silent p.F425F 0.19 TCGA-A6-2686-01 1 22138840 22138840 C T LDLRAD2 5'UTR 0.64 TCGA-A6-2686-01 1 22151124 22151124 G A LDLRAD2 3'UTR 0.21 TCGA-A6-2686-01 1 222801676 222801676 A G MIA3 Missense_Mutation p.I372V 0.26 tolerated(0.41) benign(0.004) TCGA-A6-2686-01 1 223116149 223116149 A G DISP1 Intron 0.08 TCGA-A6-2686-01 1 22332162 22332162 C A CELA3A Missense_Mutation p.L79M 0.30 tolerated(0.28) benign(0.184) TCGA-A6-2686-01 1 224424241 224424241 G A NVL Missense_Mutation p.A778V 0.24 tolerated(0.21) benign(0.002) TCGA-A6-2686-01 1 224488351 224488351 T C NVL Silent p.P325P 0.27 TCGA-A6-2686-01 1 225380439 225380439 T A DNAH14 Missense_Mutation p.N976K 0.29 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 225702326 225702326 G A ENAH Missense_Mutation p.A397V 0.47 deleterious(0) probably_damaging(0.989) TCGA-A6-2686-01 1 227171538 227171538 C A ADCK3 Silent p.A413A 0.17 TCGA-A6-2686-01 1 227171813 227171813 C - ADCK3 Frame_Shift_Del p.F427Sfs*17 0.27 TCGA-A6-2686-01 1 227935648 227935648 C A SNAP47 Missense_Mutation p.L116M 0.24 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 22828927 22828927 A - ZBTB40 Frame_Shift_Del p.R389Gfs*2 0.23 TCGA-A6-2686-01 1 228456470 228456470 G - OBSCN Frame_Shift_Del p.G1886Vfs*44 0.32 TCGA-A6-2686-01 1 228464402 228464402 C T OBSCN Missense_Mutation p.R2533W 0.44 benign(0.123) TCGA-A6-2686-01 1 228468319 228468319 C T OBSCN Silent p.P3102P 0.22 TCGA-A6-2686-01 1 228468497 228468497 G A OBSCN Missense_Mutation p.D3162N 0.87 probably_damaging(0.988) TCGA-A6-2686-01 1 228538598 228538598 G A OBSCN Missense_Mutation p.A7082T 0.29 possibly_damaging(0.865) TCGA-A6-2686-01 1 229738502 229738502 C G TAF5L Missense_Mutation p.E138Q 0.23 tolerated(0.09) probably_damaging(0.979) TCGA-A6-2686-01 1 229772905 229772905 G A URB2 Missense_Mutation p.V849M 0.15 tolerated(0.21) benign(0.014) TCGA-A6-2686-01 1 23208941 23208941 G A EPHB2 Missense_Mutation p.V465M 0.35 tolerated(0.08) possibly_damaging(0.855) TCGA-A6-2686-01 1 232650492 232650492 G A SIPA1L2 Silent p.I198I 0.22 TCGA-A6-2686-01 1 232941170 232941170 C T MAP10 Missense_Mutation p.A134V 0.45 tolerated_low_confidence(0.19) benign(0) TCGA-A6-2686-01 1 233507928 233507928 G - MLK4 Intron 0.20 TCGA-A6-2686-01 1 235606215 235606217 AAC - TBCE In_Frame_Del p.Q464del 0.18 TCGA-A6-2686-01 1 235826292 235826292 C T LYST Missense_Mutation p.R3785H 0.35 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 1 235956805 235956805 T C LYST Missense_Mutation p.T1372A 0.38 tolerated(0.22) probably_damaging(0.978) TCGA-A6-2686-01 1 236727836 236727836 T C HEATR1 Missense_Mutation p.M1521V 0.50 tolerated(0.23) benign(0.01) TCGA-A6-2686-01 1 236995290 236995290 C T MTR Missense_Mutation p.P367L 0.18 deleterious(0.01) benign(0.087) TCGA-A6-2686-01 1 237756888 237756888 G A RYR2 Missense_Mutation p.R1463H 0.33 benign(0.259) TCGA-A6-2686-01 1 237811913 237811913 G A RYR2 Silent p.T2504T 0.22 TCGA-A6-2686-01 1 238046058 238046058 G A ZP4 Silent p.D493D 0.20 TCGA-A6-2686-01 1 240656439 240656439 C T GREM2 Missense_Mutation p.E113K 0.23 tolerated(0.17) benign(0.063) TCGA-A6-2686-01 1 24121267 24121270 AGCA - LYPLA2 3'UTR 0.35 TCGA-A6-2686-01 1 241886681 241886681 C T WDR64 Silent p.I369I 0.30 TCGA-A6-2686-01 1 243327807 243327807 T C CEP170 Missense_Mutation p.Q1152R 0.17 deleterious(0) probably_damaging(0.995) TCGA-A6-2686-01 1 243329279 243329279 C A CEP170 Missense_Mutation p.K661N 0.42 tolerated(0.06) probably_damaging(0.943) TCGA-A6-2686-01 1 2440478 2440478 G A PANK4 Silent p.A710A 0.14 TCGA-A6-2686-01 1 245851293 245851293 G A KIF26B Missense_Mutation p.G1670S 0.27 deleterious(0.03) unknown(0) TCGA-A6-2686-01 1 246939715 246939715 T - RP11-439E19.10 3'Flank 0.18 TCGA-A6-2686-01 1 247030618 247030618 G A AHCTF1 Missense_Mutation p.S1101L 0.23 tolerated(0.2) possibly_damaging(0.7) TCGA-A6-2686-01 1 247201052 247201052 A C ZNF670 Missense_Mutation p.F290C 0.50 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 1 248059390 248059390 C T OR2W3 Missense_Mutation p.R168C 0.44 tolerated(0.18) benign(0.077) TCGA-A6-2686-01 1 248458413 248458413 C T OR2T12 Silent p.L156L 0.59 TCGA-A6-2686-01 1 24861848 24861848 C T RCAN3 3'UTR 0.50 TCGA-A6-2686-01 1 248801915 248801915 A C OR2T35 Silent p.S215S 0.43 TCGA-A6-2686-01 1 249151959 249151959 G T ZNF692 Intron 0.16 TCGA-A6-2686-01 1 24995872 24995872 A G SRRM1 Silent p.P666P 0.28 TCGA-A6-2686-01 1 25228811 25228811 G A RUNX3 Silent p.S364S 0.54 TCGA-A6-2686-01 1 25944321 25944321 G A MAN1C1 Silent p.P11P 0.27 TCGA-A6-2686-01 1 26372367 26372367 C T SLC30A2 Silent p.Q7Q 0.27 TCGA-A6-2686-01 1 26524494 26524494 C T CATSPER4 Missense_Mutation p.R202W 0.45 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 1 27088712 27088712 G A ARID1A Missense_Mutation p.R774H 0.19 unknown(0) TCGA-A6-2686-01 1 27216302 27216302 G A GPN2 Missense_Mutation p.R96C 0.43 tolerated(0.06) benign(0.009) TCGA-A6-2686-01 1 27277974 27277974 C T C1orf172 Missense_Mutation p.G300S 0.23 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 27278463 27278464 - G C1orf172 Frame_Shift_Ins p.S137Qfs*3 0.27 TCGA-A6-2686-01 1 27700892 27700892 C T FCN3 Missense_Mutation p.G48R 0.09 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 27742523 27742523 G A WASF2 Silent p.L165L 0.26 TCGA-A6-2686-01 1 28339785 28339785 A T EYA3 Silent p.I202I 0.27 TCGA-A6-2686-01 1 29189256 29189256 G A OPRD1 Missense_Mutation p.G194R 0.59 deleterious(0.01) probably_damaging(0.936) TCGA-A6-2686-01 1 29475611 29475611 G A SRSF4 Missense_Mutation p.R266C 0.22 deleterious(0) possibly_damaging(0.689) TCGA-A6-2686-01 1 29639169 29639169 G A PTPRU Missense_Mutation p.V1070M 0.27 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 31438954 31438954 T A PUM1 Missense_Mutation p.N654I 0.19 deleterious(0.01) benign(0.432) TCGA-A6-2686-01 1 31901873 31901873 T C SERINC2 Missense_Mutation p.Y286H 0.16 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 1 32100890 32100890 G A PEF1 Silent p.P86P 0.17 TCGA-A6-2686-01 1 32100930 32100930 G A PEF1 Missense_Mutation p.P73L 0.20 tolerated(0.19) unknown(0) TCGA-A6-2686-01 1 33245061 33245061 G A YARS Silent p.H466H 0.24 TCGA-A6-2686-01 1 33329858 33329860 TCT - FNDC5 3'UTR 0.21 TCGA-A6-2686-01 1 34011703 34011703 G A CSMD2 Missense_Mutation p.R2868W 0.25 tolerated(0.08) benign(0.117) TCGA-A6-2686-01 1 34166207 34166207 C - CSMD2 Frame_Shift_Del p.V1175* 0.17 TCGA-A6-2686-01 1 3418387 3418387 C T MEGF6 Missense_Mutation p.G763R 0.16 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 3422033 3422033 C T MEGF6 Missense_Mutation p.G669D 0.33 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 1 35250866 35250866 C - GJB3 Frame_Shift_Del p.C170Afs*98 0.19 TCGA-A6-2686-01 1 35260157 35260157 G A GJA4 Missense_Mutation p.A115T 0.25 tolerated(0.4) possibly_damaging(0.448) TCGA-A6-2686-01 1 35847346 35847346 C T ZMYM4 Missense_Mutation p.T519M 0.31 deleterious(0.01) benign(0.327) TCGA-A6-2686-01 1 35885164 35885164 G A ZMYM4 Silent p.P1511P 0.48 TCGA-A6-2686-01 1 36554684 36554684 C A ADPRHL2 Missense_Mutation p.P60Q 0.36 tolerated(0.24) benign(0.079) TCGA-A6-2686-01 1 36636626 36636626 C - MAP7D1 Frame_Shift_Del p.P36Hfs*20 0.32 TCGA-A6-2686-01 1 36643535 36643535 T A MAP7D1 Missense_Mutation p.C481S 0.32 possibly_damaging(0.473) TCGA-A6-2686-01 1 36645286 36645286 G T MAP7D1 Missense_Mutation p.E750D 0.15 unknown(0) TCGA-A6-2686-01 1 36752174 36752174 C T THRAP3 Missense_Mutation p.R115W 0.18 deleterious(0) unknown(0) TCGA-A6-2686-01 1 36784869 36784869 G A SH3D21 Missense_Mutation p.R291Q 0.39 tolerated(0.58) possibly_damaging(0.48) TCGA-A6-2686-01 1 3691940 3691940 G A SMIM1 Translation_Start_Site p.M1? 0.24 deleterious(0) probably_damaging(0.986) TCGA-A6-2686-01 1 3800351 3800351 C T DFFB 3'UTR 0.19 TCGA-A6-2686-01 1 38184055 38184055 C - EPHA10 Frame_Shift_Del p.V1006Cfs*82 0.21 TCGA-A6-2686-01 1 38227712 38227712 C T EPHA10 Missense_Mutation p.R72H 0.15 tolerated(0.4) probably_damaging(0.998) TCGA-A6-2686-01 1 39384770 39384770 G A RHBDL2 Missense_Mutation p.R39W 0.23 deleterious(0.04) benign(0.208) TCGA-A6-2686-01 1 39799390 39799390 G A MACF1 Intron 0.54 TCGA-A6-2686-01 1 40230585 40230585 C T BMP8B Intron 0.37 TCGA-A6-2686-01 1 40362992 40362992 A - MYCL 3'UTR 0.36 TCGA-A6-2686-01 1 40434281 40434281 C T MFSD2A Missense_Mutation p.R478C 0.47 deleterious(0.02) possibly_damaging(0.631) TCGA-A6-2686-01 1 40702621 40702621 C T RLF Silent p.C749C 0.13 TCGA-A6-2686-01 1 40782845 40782845 G - COL9A2 Frame_Shift_Del p.R9Afs*10 0.16 TCGA-A6-2686-01 1 41540969 41540969 G A SCMH1 Silent p.S290S 0.26 TCGA-A6-2686-01 1 42047490 42047490 T G HIVEP3 Silent p.S993S 0.24 TCGA-A6-2686-01 1 43076696 43076696 G A CCDC30 Silent p.Q477Q 0.53 TCGA-A6-2686-01 1 43896235 43896235 C A SZT2 Missense_Mutation p.R1460S 0.19 tolerated(0.78) possibly_damaging(0.835) TCGA-A6-2686-01 1 44137305 44137305 G A KDM4A Missense_Mutation p.R498H 0.23 tolerated(0.15) benign(0.289) TCGA-A6-2686-01 1 45190863 45190863 C T C1orf228 Missense_Mutation p.A395V 0.27 tolerated(0.86) benign(0.06) TCGA-A6-2686-01 1 45501807 45501807 G A ZSWIM5 Missense_Mutation p.R687C 0.44 deleterious(0) unknown(0) TCGA-A6-2686-01 1 45797708 45797708 G A MUTYH Silent p.D325D 0.17 TCGA-A6-2686-01 1 46476569 46476571 CTT - MAST2 In_Frame_Del p.F383del 0.33 TCGA-A6-2686-01 1 46509408 46509408 G A PIK3R3 Silent p.N441N 0.40 TCGA-A6-2686-01 1 46661562 46661562 T C POMGNT1 Missense_Mutation p.Y152C 0.16 probably_damaging(0.998) TCGA-A6-2686-01 1 46740246 46740246 G - RAD54L Frame_Shift_Del p.G577Afs*65 0.25 TCGA-A6-2686-01 1 47078752 47078752 C T MOB3C Missense_Mutation p.R133H 0.30 tolerated(0.1) benign(0.001) TCGA-A6-2686-01 1 48918748 48918748 C G SPATA6 Missense_Mutation p.C36S 0.25 tolerated(0.54) probably_damaging(0.974) TCGA-A6-2686-01 1 52811797 52811797 C T ZFYVE9 Silent p.S1394S 0.35 TCGA-A6-2686-01 1 52826218 52826218 C T CC2D1B Missense_Mutation p.G161R 0.16 tolerated(0.09) benign(0.214) TCGA-A6-2686-01 1 53555612 53555612 G T SLC1A7 Intron 0.30 TCGA-A6-2686-01 1 54605513 54605513 C T CDCP2 Missense_Mutation p.V344M 0.14 deleterious(0.02) possibly_damaging(0.843) TCGA-A6-2686-01 1 54694133 54694133 C T SSBP3 Missense_Mutation p.G342R 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-A6-2686-01 1 55119317 55119317 C A MROH7 Missense_Mutation p.L240I 0.26 tolerated_low_confidence(0.08) possibly_damaging(0.486) TCGA-A6-2686-01 1 55340808 55340808 G A DHCR24 Silent p.Y190Y 0.17 TCGA-A6-2686-01 1 55451924 55451924 C T TMEM61 Missense_Mutation p.P57L 0.25 deleterious(0) probably_damaging(0.96) TCGA-A6-2686-01 1 55608716 55608716 G A USP24 Missense_Mutation p.A839V 0.12 deleterious(0) probably_damaging(0.969) TCGA-A6-2686-01 1 57216717 57216717 A G C1orf168 Missense_Mutation p.C463R 0.17 tolerated(0.15) benign(0.022) TCGA-A6-2686-01 1 59134684 59134684 G T MYSM1 Missense_Mutation p.P563H 0.25 deleterious(0) possibly_damaging(0.873) TCGA-A6-2686-01 1 6279446 6279446 A C RNF207 Silent p.T628T 0.39 TCGA-A6-2686-01 1 6648831 6648831 G A ZBTB48 Missense_Mutation p.R566H 0.19 tolerated(0.07) probably_damaging(1) TCGA-A6-2686-01 1 6727782 6727782 C T DNAJC11 Missense_Mutation p.R122Q 0.38 deleterious(0.03) possibly_damaging(0.858) TCGA-A6-2686-01 1 67560973 67560973 T - C1orf141 Frame_Shift_Del p.N183Ifs*6 0.15 TCGA-A6-2686-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.34 TCGA-A6-2686-01 1 70225930 70225930 C T LRRC7 Nonsense_Mutation p.R15* 0.18 TCGA-A6-2686-01 1 70641656 70641656 C T LRRC40 Missense_Mutation p.V272I 0.51 tolerated(0.27) benign(0.02) TCGA-A6-2686-01 1 74648381 74648381 T - LRRIQ3 Frame_Shift_Del p.G139Dfs*20 0.17 TCGA-A6-2686-01 1 74670772 74670774 TGT - FPGT In_Frame_Del p.V350del 0.16 TCGA-A6-2686-01 1 75055517 75055517 C T C1orf173 Silent p.P658P 0.24 TCGA-A6-2686-01 1 75065568 75065569 - T C1orf173 Frame_Shift_Ins p.S513Ifs*2 0.35 TCGA-A6-2686-01 1 75172641 75172641 C T CRYZ Missense_Mutation p.R257Q 0.23 deleterious(0.01) benign(0.252) TCGA-A6-2686-01 1 75602895 75602896 GT - LHX8 Frame_Shift_Del p.C75Qfs*17 0.20 TCGA-A6-2686-01 1 76387915 76387916 - T ASB17 Frame_Shift_Ins p.N177Kfs*21 0.41 TCGA-A6-2686-01 1 7723458 7723458 G T CAMTA1 Missense_Mutation p.R284L 0.27 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 1 7724553 7724553 C T CAMTA1 Missense_Mutation p.T649M 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A6-2686-01 1 78338797 78338797 T - FAM73A Frame_Shift_Del p.F559Lfs*26 0.13 TCGA-A6-2686-01 1 79093647 79093647 G A IFI44L Missense_Mutation p.R16H 0.54 deleterious(0) possibly_damaging(0.497) TCGA-A6-2686-01 1 85498390 85498390 A G MCOLN3 Missense_Mutation p.F241L 0.44 deleterious(0.02) benign(0.047) TCGA-A6-2686-01 1 86820328 86820328 A G ODF2L Missense_Mutation p.L551P 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 1 87026013 87026013 A - CLCA4 Frame_Shift_Del p.K142Nfs*96 0.27 TCGA-A6-2686-01 1 87045803 87045804 - A CLCA4 Frame_Shift_Ins p.S847Kfs*4 0.21 TCGA-A6-2686-01 1 89521910 89521910 G A GBP1 Missense_Mutation p.A386V 0.43 tolerated(0.26) benign(0.007) TCGA-A6-2686-01 1 89843665 89843665 G A GBP6 Missense_Mutation p.D108N 0.17 tolerated(0.05) benign(0.21) TCGA-A6-2686-01 1 9027766 9027766 G A CA6 Missense_Mutation p.R207K 0.20 tolerated(0.52) benign(0.001) TCGA-A6-2686-01 1 90487807 90487807 A G ZNF326 Splice_Site p.X436_splice 0.51 TCGA-A6-2686-01 1 9073655 9073655 C T SLC2A7 Missense_Mutation p.V315M 0.38 deleterious(0.03) probably_damaging(0.934) TCGA-A6-2686-01 1 91406749 91406749 G A ZNF644 Silent p.S54S 0.35 TCGA-A6-2686-01 1 93599314 93599314 A G MTF2 Silent p.P405P 0.27 TCGA-A6-2686-01 1 94639400 94639400 A - ARHGAP29 3'UTR 0.33 TCGA-A6-2686-01 1 949838 949838 G T ISG15 Nonsense_Mutation p.E160* 0.50 TCGA-A6-2686-01 1 977390 977390 G A AGRN Missense_Mutation p.R411H 0.35 tolerated(0.16) possibly_damaging(0.522) TCGA-A6-2686-01 1 981930 981930 C T AGRN Missense_Mutation p.S1022L 0.32 tolerated(0.13) benign(0.307) TCGA-A6-2686-01 20 10639258 10639258 G A JAG1 Silent p.R184R 0.46 TCGA-A6-2686-01 20 1224753 1224753 A G RAD21L1 Missense_Mutation p.D416G 0.22 tolerated(0.07) benign(0.007) TCGA-A6-2686-01 20 13134750 13134750 T C SPTLC3 Silent p.V460V 0.10 TCGA-A6-2686-01 20 1961208 1961208 C A PDYN Missense_Mutation p.G176W 0.32 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 20 20024151 20024151 G A CRNKL1 Silent p.Y480Y 0.18 TCGA-A6-2686-01 20 20351286 20351286 G A INSM1 3'UTR 0.45 TCGA-A6-2686-01 20 21494157 21494157 C A NKX2-2 Missense_Mutation p.G51C 0.37 tolerated(0.05) benign(0.125) TCGA-A6-2686-01 20 21494204 21494204 T C NKX2-2 Missense_Mutation p.E35G 0.38 tolerated(0.24) benign(0.016) TCGA-A6-2686-01 20 23017105 23017105 C T SSTR4 Missense_Mutation p.R329C 0.41 tolerated(0.13) benign(0.003) TCGA-A6-2686-01 20 23064957 23064957 C T CD93 Missense_Mutation p.A625T 0.48 tolerated(0.48) benign(0.06) TCGA-A6-2686-01 20 23334743 23334743 A G NXT1 Missense_Mutation p.N22S 0.27 tolerated(0.06) benign(0.001) TCGA-A6-2686-01 20 2384322 2384322 G A TGM6 Missense_Mutation p.A397T 0.50 deleterious(0) possibly_damaging(0.842) TCGA-A6-2686-01 20 2464953 2464953 G T ZNF343 Silent p.A218A 0.40 TCGA-A6-2686-01 20 24988360 24988360 G T ACSS1 3'UTR 0.21 TCGA-A6-2686-01 20 25206242 25206242 C T ENTPD6 3'UTR 0.16 TCGA-A6-2686-01 20 30194280 30194280 T - ID1 3'UTR 0.17 TCGA-A6-2686-01 20 30253791 30253791 G A BCL2L1 Silent p.A221A 0.35 TCGA-A6-2686-01 20 30583056 30583056 C T XKR7 Missense_Mutation p.A257V 0.32 tolerated(0.37) benign(0.009) TCGA-A6-2686-01 20 30745711 30745711 C T TM9SF4 Missense_Mutation p.R482C 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 20 3127459 3127459 G A FASTKD5 Missense_Mutation p.A753V 0.15 deleterious(0.02) possibly_damaging(0.623) TCGA-A6-2686-01 20 31673955 31673955 T A BPIFB4 Missense_Mutation p.V304D 0.42 deleterious(0) probably_damaging(0.979) TCGA-A6-2686-01 20 3181099 3181099 G T DDRGK1 Silent p.A99A 0.38 TCGA-A6-2686-01 20 31873883 31873883 G A BPIFB1 Missense_Mutation p.A2T 0.21 deleterious(0.04) benign(0.167) TCGA-A6-2686-01 20 3210852 3210852 G A SLC4A11 Silent p.A533A 0.34 TCGA-A6-2686-01 20 3214868 3214868 C T SLC4A11 Silent p.T171T 0.43 TCGA-A6-2686-01 20 33169400 33169400 C T PIGU Missense_Mutation p.V335M 0.55 deleterious(0.01) possibly_damaging(0.888) TCGA-A6-2686-01 20 33582153 33582153 G A MYH7B Silent p.T925T 0.48 TCGA-A6-2686-01 20 33586952 33586955 ACAG - MYH7B Frame_Shift_Del p.T1472Sfs*5 0.37 TCGA-A6-2686-01 20 33902535 33902535 G T UQCC1 Missense_Mutation p.L203I 0.16 tolerated(0.39) benign(0.005) TCGA-A6-2686-01 20 34575316 34575316 G T CNBD2 Splice_Site p.X239_splice 0.35 TCGA-A6-2686-01 20 35219681 35219681 C T TGIF2 Silent p.P187P 0.19 TCGA-A6-2686-01 20 35929740 35929740 G A MANBAL Missense_Mutation p.G25E 0.37 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 20 36361416 36361416 A - CTNNBL1 Frame_Shift_Del p.R58Gfs*25 0.45 TCGA-A6-2686-01 20 3678781 3678781 C T SIGLEC1 Splice_Site p.X596_splice 0.38 TCGA-A6-2686-01 20 3731511 3731511 C T HSPA12B Silent p.N454N 0.16 TCGA-A6-2686-01 20 37353383 37353383 C T SLC32A1 Missense_Mutation p.R6C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.65) TCGA-A6-2686-01 20 37356292 37356292 G A SLC32A1 Silent p.P196P 0.17 TCGA-A6-2686-01 20 3914753 3914753 C T RNF24 Missense_Mutation p.G156E 0.36 tolerated(0.61) benign(0.279) TCGA-A6-2686-01 20 39986619 39986619 C A LPIN3 Missense_Mutation p.L713I 0.37 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 20 40050653 40050653 C T CHD6 Missense_Mutation p.R1541H 0.48 deleterious(0) benign(0.137) TCGA-A6-2686-01 20 40790168 40790168 C T PTPRT Missense_Mutation p.G836R 0.35 tolerated(0.15) benign(0.177) TCGA-A6-2686-01 20 407981 407981 C T RBCK1 Nonsense_Mutation p.R352* 0.50 TCGA-A6-2686-01 20 4167470 4167470 C T SMOX Intron 0.47 TCGA-A6-2686-01 20 419793 419793 G A TBC1D20 Silent p.S305S 0.27 TCGA-A6-2686-01 20 42143384 42143384 C T L3MBTL1 Missense_Mutation p.A135V 0.16 tolerated(0.1) benign(0.006) TCGA-A6-2686-01 20 42876133 42876133 C T GDAP1L1 Silent p.T53T 0.38 TCGA-A6-2686-01 20 43374806 43374806 C T KCNK15 Silent p.Y85Y 0.29 TCGA-A6-2686-01 20 43927061 43927061 C T MATN4 Missense_Mutation p.R392H 0.29 probably_damaging(0.999) TCGA-A6-2686-01 20 43932941 43932941 G A MATN4 Silent p.D190D 0.19 TCGA-A6-2686-01 20 43932984 43932984 G A MATN4 Missense_Mutation p.A176V 0.31 possibly_damaging(0.881) TCGA-A6-2686-01 20 44184477 44184477 T - WFDC8 Frame_Shift_Del p.N103Tfs*34 0.24 TCGA-A6-2686-01 20 44644913 44644913 G A MMP9 Missense_Mutation p.R677H 0.36 tolerated(0.16) benign(0.011) TCGA-A6-2686-01 20 44691404 44691404 G - NCOA5 Frame_Shift_Del p.T426Pfs*19 0.23 TCGA-A6-2686-01 20 45129805 45129805 A G ZNF334 3'UTR 0.37 TCGA-A6-2686-01 20 45192083 45192083 G A SLC13A3 Silent p.F534F 0.44 TCGA-A6-2686-01 20 45355517 45355517 C T SLC2A10 Missense_Mutation p.L435F 0.36 deleterious(0) probably_damaging(0.928) TCGA-A6-2686-01 20 45702944 45702944 G A EYA2 Missense_Mutation p.V211I 0.41 tolerated(0.48) benign(0.004) TCGA-A6-2686-01 20 4680931 4680931 G A PRNP 3'UTR 0.49 TCGA-A6-2686-01 20 47248897 47248897 C A PREX1 Missense_Mutation p.G1482C 0.30 deleterious(0.01) possibly_damaging(0.77) TCGA-A6-2686-01 20 47707365 47707365 G A CSE1L Silent p.E756E 0.17 TCGA-A6-2686-01 20 4842674 4842674 C A SLC23A2 Missense_Mutation p.R515L 0.29 deleterious(0) probably_damaging(0.948) TCGA-A6-2686-01 20 49510528 49510528 G A ADNP Silent p.I241I 0.33 TCGA-A6-2686-01 20 50048838 50048838 G A NFATC2 Missense_Mutation p.H830Y 0.17 tolerated(0.31) benign(0.379) TCGA-A6-2686-01 20 51872308 51872308 A - TSHZ2 Frame_Shift_Del p.S772Afs*48 0.30 TCGA-A6-2686-01 20 54824646 54824646 C T MC3R Silent p.G249G 0.33 TCGA-A6-2686-01 20 55052149 55052149 G A RTFDC1 Missense_Mutation p.V123I 0.10 tolerated(0.16) possibly_damaging(0.612) TCGA-A6-2686-01 20 56821262 56821262 C T PPP4R1L Missense_Mutation p.V191M 0.36 tolerated(0.34) benign(0.031) TCGA-A6-2686-01 20 58439223 58439223 T - SYCP2 3'UTR 0.30 TCGA-A6-2686-01 20 58440875 58440875 T - SYCP2 Frame_Shift_Del p.S1456Afs*9 0.24 TCGA-A6-2686-01 20 58475220 58475220 T - SYCP2 Frame_Shift_Del p.N461Ifs*22 0.30 TCGA-A6-2686-01 20 5975105 5975105 G A MCM8 3'UTR 0.38 TCGA-A6-2686-01 20 60708367 60708367 C T LSM14B Silent p.A336A 0.47 TCGA-A6-2686-01 20 60901975 60901975 G A LAMA5 Silent p.T1720T 0.22 TCGA-A6-2686-01 20 60989003 60989003 G A RBBP8NL Silent p.A468A 0.14 TCGA-A6-2686-01 20 61048564 61048564 C T GATA5 Silent p.P198P 0.20 TCGA-A6-2686-01 20 61542263 61542263 T G DIDO1 Missense_Mutation p.R234S 0.12 benign(0.008) TCGA-A6-2686-01 20 61990965 61990965 C T CHRNA4 Missense_Mutation p.V55M 0.29 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 20 62160904 62160904 G A PTK6 Silent p.Y447Y 0.42 TCGA-A6-2686-01 20 62193251 62193251 G - HELZ2 Frame_Shift_Del p.R2206Vfs*29 0.24 TCGA-A6-2686-01 20 62196240 62196240 T C HELZ2 Missense_Mutation p.D1312G 0.14 tolerated(0.08) possibly_damaging(0.637) TCGA-A6-2686-01 20 62203610 62203610 C T HELZ2 Silent p.P43P 0.38 TCGA-A6-2686-01 20 62331840 62331840 G A ARFRP1 Silent p.V187V 0.28 TCGA-A6-2686-01 20 62370121 62370121 C T LIME1 Silent p.N252N 0.17 TCGA-A6-2686-01 20 62664280 62664280 C A PRPF6 Silent p.A920A 0.17 TCGA-A6-2686-01 20 62714846 62714846 C T C20orf201 Silent p.A205A 0.50 TCGA-A6-2686-01 20 62853245 62853245 G A MYT1 Splice_Site p.X748_splice 0.20 TCGA-A6-2686-01 20 62863602 62863602 G A MYT1 Missense_Mutation p.A921T 0.43 probably_damaging(0.999) TCGA-A6-2686-01 20 62891515 62891515 C T PCMTD2 Missense_Mutation p.P66L 0.41 deleterious(0) probably_damaging(0.972) TCGA-A6-2686-01 20 826872 826872 C A FAM110A 3'UTR 0.19 TCGA-A6-2686-01 21 10908877 10908877 C T TPTE Missense_Mutation p.D490N 0.21 deleterious(0.02) probably_damaging(0.983) TCGA-A6-2686-01 21 19167581 19167581 G A C21orf91 Missense_Mutation p.S224L 0.35 tolerated(0.29) benign(0.026) TCGA-A6-2686-01 21 28210390 28210390 G A ADAMTS1 Silent p.S804S 0.14 TCGA-A6-2686-01 21 28338300 28338300 G A ADAMTS5 Silent p.D137D 0.35 TCGA-A6-2686-01 21 30307467 30307467 A G LTN1 Silent p.S1659S 0.24 TCGA-A6-2686-01 21 31587691 31587691 C T CLDN8 Missense_Mutation p.V185I 0.15 tolerated(0.17) benign(0.002) TCGA-A6-2686-01 21 31654982 31654982 T C KRTAP24-1 Missense_Mutation p.N90S 0.40 tolerated(0.09) benign(0.009) TCGA-A6-2686-01 21 31798227 31798227 A G KRTAP13-3 Missense_Mutation p.S2P 0.17 tolerated(0.1) possibly_damaging(0.521) TCGA-A6-2686-01 21 32410535 32410535 G A KRTAP19-8 3'UTR 0.18 TCGA-A6-2686-01 21 33711078 33711078 G A URB1 Missense_Mutation p.S1483L 0.43 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 21 34045720 34045720 A G SYNJ1 Silent p.A591A 0.08 TCGA-A6-2686-01 21 35183526 35183526 C T ITSN1 Missense_Mutation p.T856M 0.17 tolerated(0.2) possibly_damaging(0.512) TCGA-A6-2686-01 21 35821827 35821827 G - KCNE1 Frame_Shift_Del p.R36Afs*28 0.22 TCGA-A6-2686-01 21 37618806 37618806 G A DOPEY2 Missense_Mutation p.A1510T 0.31 tolerated(0.22) benign(0.003) TCGA-A6-2686-01 21 37741646 37741646 C T MORC3 Silent p.D660D 0.38 TCGA-A6-2686-01 21 40752224 40752224 G A WRB 5'UTR 0.44 TCGA-A6-2686-01 21 41033833 41033833 T C B3GALT5 3'UTR 0.32 TCGA-A6-2686-01 21 41142960 41142960 G A IGSF5 Missense_Mutation p.G179D 0.40 tolerated(0.22) benign(0.006) TCGA-A6-2686-01 21 41561046 41561046 G A DSCAM Nonsense_Mutation p.R826* 0.20 TCGA-A6-2686-01 21 42540489 42540489 C - BACE2 Frame_Shift_Del p.P102Rfs*25 0.39 TCGA-A6-2686-01 21 43161141 43161141 C T RIPK4 Missense_Mutation p.A738T 0.48 deleterious(0.02) benign(0.141) TCGA-A6-2686-01 21 43508533 43508533 A G UMODL1 Missense_Mutation p.T245A 0.50 tolerated(0.94) benign(0) TCGA-A6-2686-01 21 43711766 43711766 G T ABCG1 Missense_Mutation p.Q563H 0.23 tolerated(0.07) benign(0.049) TCGA-A6-2686-01 21 44488637 44488637 C T CBS Missense_Mutation p.G100S 0.41 deleterious(0) probably_damaging(0.987) TCGA-A6-2686-01 21 45676011 45676011 G A DNMT3L Silent p.T181T 0.12 TCGA-A6-2686-01 21 45755655 45755655 C A C21orf2 Missense_Mutation p.E43D 0.58 deleterious(0.01) probably_damaging(0.992) TCGA-A6-2686-01 21 46011821 46011821 A C KRTAP10-6 Missense_Mutation p.V182G 0.24 tolerated(0.11) unknown(0) TCGA-A6-2686-01 21 46320365 46320365 G A ITGB2 Missense_Mutation p.T256M 0.52 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 21 46596482 46596482 C T ADARB1 Missense_Mutation p.A289V 0.24 deleterious(0) probably_damaging(0.989) TCGA-A6-2686-01 21 46915345 46915345 G T COL18A1 Missense_Mutation p.R1016M 0.38 probably_damaging(0.976) TCGA-A6-2686-01 21 47552216 47552216 G A COL6A2 Missense_Mutation p.R937Q 0.55 deleterious(0.01) probably_damaging(0.997) TCGA-A6-2686-01 21 48068400 48068400 C A PRMT2 Missense_Mutation p.P120T 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-A6-2686-01 22 16266991 16266991 T C POTEH Silent p.P486P 0.06 TCGA-A6-2686-01 22 17073106 17073106 G A CCT8L2 Missense_Mutation p.T112M 0.36 deleterious(0) possibly_damaging(0.777) TCGA-A6-2686-01 22 18222886 18222886 C T BID Intron 0.18 TCGA-A6-2686-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.27 TCGA-A6-2686-01 22 18387502 18387502 C T MICAL3 Missense_Mutation p.R123H 0.56 probably_damaging(0.999) TCGA-A6-2686-01 22 19492957 19492957 G T CDC45 Missense_Mutation p.E291D 0.28 tolerated(0.27) benign(0.02) TCGA-A6-2686-01 22 19707674 19707674 C T SEPT5 Missense_Mutation p.T92M 0.23 deleterious(0.01) probably_damaging(1) TCGA-A6-2686-01 22 19839715 19839715 C T C22orf29 Missense_Mutation p.A24T 0.48 tolerated_low_confidence(0.38) benign(0.009) TCGA-A6-2686-01 22 20030915 20030915 C T TANGO2 Nonsense_Mutation p.R32* 0.12 TCGA-A6-2686-01 22 20457265 20457265 G A RIMBP3 Missense_Mutation p.A1346V 0.28 tolerated(0.12) benign(0.005) TCGA-A6-2686-01 22 20825733 20825733 A G KLHL22 Silent p.N99N 0.33 TCGA-A6-2686-01 22 20843305 20843305 C T KLHL22 Missense_Mutation p.R65H 0.20 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 22 20977047 20977047 G A SMPD4P1 RNA 0.48 TCGA-A6-2686-01 22 21982925 21982925 G A YDJC Missense_Mutation p.P252S 0.27 tolerated(0.07) possibly_damaging(0.516) TCGA-A6-2686-01 22 22065109 22065109 G T YPEL1 5'UTR 0.53 TCGA-A6-2686-01 22 22764343 22764343 G T IGLV1-40 Missense_Mutation p.V29L 0.21 deleterious_low_confidence(0.01) benign(0.076) TCGA-A6-2686-01 22 23615934 23615934 G A BCR Silent p.R696R 0.63 TCGA-A6-2686-01 22 24036039 24036039 C T RGL4 Missense_Mutation p.R264C 0.34 tolerated(0.15) benign(0.052) TCGA-A6-2686-01 22 24087086 24087086 G - ZNF70 Frame_Shift_Del p.P81Qfs*26 0.24 TCGA-A6-2686-01 22 24106592 24106592 G T C22orf15 Intron 0.45 TCGA-A6-2686-01 22 24451534 24451534 C T CABIN1 Silent p.V335V 0.31 TCGA-A6-2686-01 22 25251570 25251570 C T SGSM1 Missense_Mutation p.R242C 0.18 deleterious(0) probably_damaging(0.983) TCGA-A6-2686-01 22 26709833 26709833 G A SEZ6L Silent p.V660V 0.44 TCGA-A6-2686-01 22 26860352 26860352 G A HPS4 Missense_Mutation p.T415M 0.18 tolerated(0.12) benign(0.002) TCGA-A6-2686-01 22 26932299 26932299 G - TPST2 Frame_Shift_Del p.N333Tfs*17 0.29 TCGA-A6-2686-01 22 29120963 29120963 A G CHEK2 Splice_Site p.X241_splice 0.48 TCGA-A6-2686-01 22 29176980 29176980 C T CCDC117 Missense_Mutation p.A95V 0.37 tolerated(0.52) possibly_damaging(0.866) TCGA-A6-2686-01 22 29693885 29693885 C T EWSR1 Missense_Mutation p.R460W 0.27 tolerated(0.12) unknown(0) TCGA-A6-2686-01 22 30221719 30221719 A - ASCC2 Frame_Shift_Del p.D46Tfs*6 0.16 TCGA-A6-2686-01 22 30775606 30775606 G T RNF215 Missense_Mutation p.R373S 0.33 tolerated_low_confidence(0.41) benign(0.137) TCGA-A6-2686-01 22 31495825 31495825 G T SMTN Missense_Mutation p.G849V 0.26 deleterious(0.01) benign(0.102) TCGA-A6-2686-01 22 31658586 31658586 G T LIMK2 Missense_Mutation p.E200D 0.43 tolerated(0.82) benign(0.003) TCGA-A6-2686-01 22 36587713 36587713 T C APOL4 Missense_Mutation p.I155V 0.36 tolerated(0.38) benign(0.001) TCGA-A6-2686-01 22 36681336 36681336 G T MYH9 Missense_Mutation p.H1772N 0.35 benign(0.001) TCGA-A6-2686-01 22 37865868 37865868 G A MFNG 3'UTR 0.50 TCGA-A6-2686-01 22 38147797 38147799 AAG - TRIOBP In_Frame_Del p.K1782del 0.19 TCGA-A6-2686-01 22 38875737 38875738 AC - KDELR3 Frame_Shift_Del p.Y111* 0.17 TCGA-A6-2686-01 22 39095929 39095929 C T JOSD1 Missense_Mutation p.A22T 0.09 tolerated(0.45) benign(0) TCGA-A6-2686-01 22 39144732 39144732 G A SUN2 Missense_Mutation p.T245M 0.33 deleterious(0.02) probably_damaging(0.915) TCGA-A6-2686-01 22 39421232 39421232 A T APOBEC3D Missense_Mutation p.H123L 0.44 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 22 39815589 39815589 G A TAB1 Missense_Mutation p.G244R 0.29 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 22 40061563 40061563 G A CACNA1I Silent p.K1304K 0.42 TCGA-A6-2686-01 22 41305195 41305195 C T XPNPEP3 Missense_Mutation p.R309W 0.47 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 22 41645790 41645790 C T RANGAP1 Silent p.S505S 0.17 TCGA-A6-2686-01 22 41664124 41664124 G A RANGAP1 Missense_Mutation p.R93W 0.40 deleterious(0) probably_damaging(0.992) TCGA-A6-2686-01 22 41968003 41968003 C - CSDC2 Frame_Shift_Del p.P13Rfs*101 0.50 TCGA-A6-2686-01 22 44127614 44127614 T C EFCAB6 Missense_Mutation p.N241S 0.43 tolerated(0.42) benign(0.051) TCGA-A6-2686-01 22 44968028 44968028 T C LINC00207 RNA 0.29 TCGA-A6-2686-01 22 45312421 45312421 G T PHF21B Silent p.A101A 0.25 TCGA-A6-2686-01 22 46655092 46655092 A - PKDREJ Frame_Shift_Del p.F1376Lfs*19 0.22 TCGA-A6-2686-01 22 46658374 46658374 G A PKDREJ Silent p.L282L 0.46 TCGA-A6-2686-01 22 46693315 46693315 C T GTSE1 Silent p.G6G 0.28 TCGA-A6-2686-01 22 46760012 46760012 G A CELSR1 Silent p.G2972G 0.16 TCGA-A6-2686-01 22 46930575 46930575 G T CELSR1 Silent p.P831P 0.20 TCGA-A6-2686-01 22 47064801 47064801 C T GRAMD4 Silent p.A360A 0.33 TCGA-A6-2686-01 22 50636541 50636541 C T TRABD Silent p.G294G 0.42 TCGA-A6-2686-01 22 50861978 50861978 C A PPP6R2 Missense_Mutation p.L355M 0.27 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 2 100013330 100013331 AG - EIF5B Frame_Shift_Del p.Q1121Rfs*13 0.21 TCGA-A6-2686-01 2 100900955 100900955 C A LONRF2 Splice_Site p.X691_splice 0.36 TCGA-A6-2686-01 2 102789296 102789296 C A IL1R1 Missense_Mutation p.P330Q 0.09 deleterious(0.02) probably_damaging(0.952) TCGA-A6-2686-01 2 103053690 103053690 G A IL18RAP Missense_Mutation p.V200M 0.16 tolerated(0.09) benign(0) TCGA-A6-2686-01 2 105473128 105473128 C T POU3F3 Missense_Mutation p.A387V 0.40 deleterious(0.01) possibly_damaging(0.83) TCGA-A6-2686-01 2 11053777 11053777 T G KCNF1 Missense_Mutation p.F409V 0.33 deleterious(0) possibly_damaging(0.665) TCGA-A6-2686-01 2 111419366 111419366 G A BUB1 Missense_Mutation p.A337V 0.20 tolerated(0.15) benign(0.004) TCGA-A6-2686-01 2 113082731 113082731 A G ZC3H6 Silent p.E681E 0.40 TCGA-A6-2686-01 2 113308539 113308539 G A POLR1B Missense_Mutation p.R241Q 0.13 tolerated(0.27) benign(0.002) TCGA-A6-2686-01 2 113674748 113674748 A G IL37 Missense_Mutation p.H63R 0.45 tolerated(1) benign(0.001) TCGA-A6-2686-01 2 114257124 114257124 G A FOXD4L1 Silent p.A97A 0.09 TCGA-A6-2686-01 2 114258189 114258189 C T FOXD4L1 3'UTR 0.24 TCGA-A6-2686-01 2 118866049 118866049 C T INSIG2 3'UTR 0.19 TCGA-A6-2686-01 2 122125186 122125186 G A CLASP1 Silent p.D1288D 0.26 TCGA-A6-2686-01 2 122165236 122165236 G A CLASP1 Missense_Mutation p.A827V 0.35 deleterious(0.02) possibly_damaging(0.818) TCGA-A6-2686-01 2 124783221 124783221 G - CNTNAP5 5'UTR 0.25 TCGA-A6-2686-01 2 125672719 125672722 ATAC - CNTNAP5 3'UTR 0.38 TCGA-A6-2686-01 2 128096511 128096511 T - MAP3K2 Frame_Shift_Del p.K40Nfs*29 0.24 TCGA-A6-2686-01 2 128183706 128183706 G A PROC Missense_Mutation p.R194H 0.10 tolerated(0.12) benign(0.051) TCGA-A6-2686-01 2 128471272 128471272 C - WDR33 Frame_Shift_Del p.D1065Mfs*216 0.44 TCGA-A6-2686-01 2 128935432 128935432 C T UGGT1 Silent p.N1217N 0.17 TCGA-A6-2686-01 2 130948139 130948139 C T MZT2B Silent p.S139S 0.30 TCGA-A6-2686-01 2 131520939 131520939 G A AMER3 Missense_Mutation p.G432S 0.67 tolerated(0.38) benign(0.093) TCGA-A6-2686-01 2 131523319 131523320 GA - AMER3 3'UTR 0.30 TCGA-A6-2686-01 2 132238238 132238239 - CCCAAAGA TUBA3D Frame_Shift_Ins p.V328Pfs*54 0.19 TCGA-A6-2686-01 2 133402793 133402793 C A GPR39 Missense_Mutation p.L326I 0.16 tolerated(0.22) possibly_damaging(0.883) TCGA-A6-2686-01 2 136567493 136567493 A G LCT Silent p.P808P 0.35 TCGA-A6-2686-01 2 137814147 137814147 G T THSD7B Missense_Mutation p.W99C 0.23 deleterious(0) possibly_damaging(0.827) TCGA-A6-2686-01 2 149853788 149853788 C T KIF5C Silent p.H678H 0.45 TCGA-A6-2686-01 2 152301933 152301934 - T RIF1 Frame_Shift_Ins p.S692Ffs*15 0.32 TCGA-A6-2686-01 2 152319620 152319620 G A RIF1 Missense_Mutation p.V1196I 0.15 tolerated(0.41) benign(0.001) TCGA-A6-2686-01 2 152322002 152322002 A T RIF1 Missense_Mutation p.I1990F 0.25 deleterious_low_confidence(0.03) benign(0.004) TCGA-A6-2686-01 2 152484040 152484040 G A NEB Silent p.S3380S 0.26 TCGA-A6-2686-01 2 152695442 152695442 G A CACNB4 3'UTR 0.35 TCGA-A6-2686-01 2 153484861 153484861 G A FMNL2 Silent p.R738R 0.28 TCGA-A6-2686-01 2 153575270 153575270 G C ARL6IP6 Missense_Mutation p.E44D 0.16 tolerated_low_confidence(0.26) benign(0.009) TCGA-A6-2686-01 2 15378648 15378648 C T NBAS Missense_Mutation p.A1963T 0.50 tolerated(0.08) benign(0.146) TCGA-A6-2686-01 2 15694247 15694248 - A NBAS Frame_Shift_Ins p.L75Ffs*4 0.19 TCGA-A6-2686-01 2 159389787 159389787 G A PKP4 Missense_Mutation p.E31K 0.39 deleterious(0) benign(0.154) TCGA-A6-2686-01 2 160304785 160304785 G A BAZ2B Missense_Mutation p.S157L 0.12 benign(0.32) TCGA-A6-2686-01 2 160735816 160735816 T C LY75-CD302 Missense_Mutation p.E490G 0.11 deleterious(0) probably_damaging(0.969) TCGA-A6-2686-01 2 160755387 160755387 T A LY75-CD302 Missense_Mutation p.N93I 0.49 deleterious(0.02) benign(0.001) TCGA-A6-2686-01 2 160833212 160833212 C T PLA2R1 Silent p.P807P 0.19 TCGA-A6-2686-01 2 1642615 1642615 C G PXDN Intron 0.27 TCGA-A6-2686-01 2 165353901 165353902 - T GRB14 Frame_Shift_Ins p.E402Rfs*18 0.23 TCGA-A6-2686-01 2 1657496 1657496 C A PXDN Missense_Mutation p.V670F 0.17 tolerated(0.17) benign(0.027) TCGA-A6-2686-01 2 167141148 167141148 G A SCN9A Nonsense_Mutation p.R597* 0.23 TCGA-A6-2686-01 2 168104142 168104145 CAGA - XIRP2 Frame_Shift_Del p.R2081Nfs*2 0.52 TCGA-A6-2686-01 2 168105985 168105985 C T XIRP2 Nonsense_Mutation p.Q2695* 0.18 TCGA-A6-2686-01 2 170097722 170097722 G A LRP2 Missense_Mutation p.S1274L 0.16 possibly_damaging(0.61) TCGA-A6-2686-01 2 170591907 170591907 G A KLHL23 Missense_Mutation p.R128Q 0.14 tolerated(0.9) benign(0.001) TCGA-A6-2686-01 2 172016964 172016964 C - TLK1 5'UTR 0.49 TCGA-A6-2686-01 2 172300086 172300086 A - DCAF17 Frame_Shift_Del p.I97* 0.22 TCGA-A6-2686-01 2 173368981 173368981 C T ITGA6 3'UTR 0.47 TCGA-A6-2686-01 2 175094070 175094070 A C OLA1 Missense_Mutation p.F71V 0.25 deleterious(0) probably_damaging(0.972) TCGA-A6-2686-01 2 176948275 176948275 A G EVX2 Missense_Mutation p.F77S 0.32 tolerated(0.24) benign(0.093) TCGA-A6-2686-01 2 176965440 176965442 GAA - HOXD12 In_Frame_Del p.K258del 0.49 TCGA-A6-2686-01 2 17851735 17851735 G A SMC6 Silent p.I1006I 0.29 TCGA-A6-2686-01 2 179433562 179433562 T G TTN Missense_Mutation p.E25766A 0.21 TCGA-A6-2686-01 2 179438219 179438219 C - TTN Frame_Shift_Del p.V24214Cfs*4 0.16 TCGA-A6-2686-01 2 179448262 179448263 - T TTN Intron 0.17 TCGA-A6-2686-01 2 179469788 179469788 T C TTN Missense_Mutation p.D18039G 0.16 TCGA-A6-2686-01 2 179550015 179550016 - T TTN Frame_Shift_Ins p.I10812Nfs*4 0.32 TCGA-A6-2686-01 2 179610909 179610909 G A TTN Intron 0.32 TCGA-A6-2686-01 2 179641466 179641467 - T TTN Frame_Shift_Ins p.L1709Tfs*7 0.29 TCGA-A6-2686-01 2 181927776 181927776 C T UBE2E3 3'UTR 0.38 TCGA-A6-2686-01 2 183584885 183584885 G A DNAJC10 Missense_Mutation p.R119H 0.17 tolerated(0.06) benign(0.045) TCGA-A6-2686-01 2 183616465 183616465 T C DNAJC10 Missense_Mutation p.F463L 0.09 deleterious(0) probably_damaging(0.957) TCGA-A6-2686-01 2 186671226 186671226 A - FSIP2 Frame_Shift_Del p.V5823Yfs*24 0.21 TCGA-A6-2686-01 2 187351159 187351159 A - ZC3H15 Frame_Shift_Del p.K19Rfs*13 0.29 TCGA-A6-2686-01 2 189599261 189599261 A - DIRC1 3'UTR 0.26 TCGA-A6-2686-01 2 191845379 191845379 G - STAT1 Frame_Shift_Del p.D534Mfs*14 0.21 TCGA-A6-2686-01 2 191862631 191862631 C T STAT1 Missense_Mutation p.A246T 0.11 tolerated(0.05) possibly_damaging(0.817) TCGA-A6-2686-01 2 192246226 192246226 C T MYO1B Silent p.N408N 0.31 TCGA-A6-2686-01 2 197021278 197021278 G A STK17B Nonsense_Mutation p.R74* 0.27 TCGA-A6-2686-01 2 197084817 197084817 C A HECW2 Missense_Mutation p.G1452C 0.36 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 2 197184179 197184179 G A HECW2 Missense_Mutation p.P479S 0.37 tolerated_low_confidence(0.38) benign(0.007) TCGA-A6-2686-01 2 197674047 197674047 G T C2orf66 Missense_Mutation p.P22H 0.23 tolerated(0.58) benign(0.239) TCGA-A6-2686-01 2 202003048 202003048 G A CFLAR Intron 0.56 TCGA-A6-2686-01 2 202070637 202070637 G A CASP10 Missense_Mutation p.V252I 0.29 tolerated(0.42) benign(0.017) TCGA-A6-2686-01 2 203384876 203384876 T C BMPR2 Missense_Mutation p.S307P 0.23 tolerated(0.07) probably_damaging(0.988) TCGA-A6-2686-01 2 20451293 20451293 A - PUM2 3'UTR 0.15 TCGA-A6-2686-01 2 207172114 207172114 T C ZDBF2 Silent p.F954F 0.34 TCGA-A6-2686-01 2 211179701 211179701 C T MYL1 Silent p.P22P 0.38 TCGA-A6-2686-01 2 211319886 211319886 C T LANCL1 Missense_Mutation p.A118T 0.48 tolerated(0.07) probably_damaging(0.917) TCGA-A6-2686-01 2 216190845 216190845 G A ATIC Missense_Mutation p.R172H 0.25 deleterious(0) possibly_damaging(0.705) TCGA-A6-2686-01 2 216274448 216274448 C A FN1 Nonsense_Mutation p.G713* 0.23 TCGA-A6-2686-01 2 218925566 218925566 C A CXCR2P1 RNA 0.18 TCGA-A6-2686-01 2 218999828 218999828 C T CXCR2 Missense_Mutation p.P102S 0.35 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 2 219619157 219619157 C T TTLL4 3'UTR 0.44 TCGA-A6-2686-01 2 220082393 220082393 T C ABCB6 Missense_Mutation p.Q229R 0.38 tolerated(0.35) benign(0.002) TCGA-A6-2686-01 2 220285298 220285298 G A DES Missense_Mutation p.A273T 0.23 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 2 220312816 220312816 G A SPEG Silent p.P312P 0.18 TCGA-A6-2686-01 2 220437288 220437288 G - INHA Frame_Shift_Del p.G66Afs*61 0.27 TCGA-A6-2686-01 2 228860341 228860341 G A SPHKAP Silent p.A1506A 0.24 TCGA-A6-2686-01 2 230231695 230231695 G A DNER Missense_Mutation p.R666C 0.26 deleterious(0) probably_damaging(0.939) TCGA-A6-2686-01 2 230655859 230655860 - T TRIP12 Frame_Shift_Ins p.H1434Afs*2 0.15 TCGA-A6-2686-01 2 230663651 230663651 C T TRIP12 Missense_Mutation p.R1066Q 0.21 tolerated(0.32) possibly_damaging(0.46) TCGA-A6-2686-01 2 230787225 230787225 C T FBXO36 5'UTR 0.23 TCGA-A6-2686-01 2 231191909 231191909 C T SP140L 5'UTR 0.34 TCGA-A6-2686-01 2 232030681 232030681 C T PSMD1 Missense_Mutation p.L889F 0.08 tolerated(0.14) possibly_damaging(0.496) TCGA-A6-2686-01 2 232601953 232601953 C T PDE6D Nonsense_Mutation p.W105* 0.28 TCGA-A6-2686-01 2 234652283 234652283 G A UGT1A10 Intron 0.36 TCGA-A6-2686-01 2 235951891 235951891 G A SH3BP4 Missense_Mutation p.M826I 0.26 tolerated(0.22) benign(0.071) TCGA-A6-2686-01 2 237374245 237374245 C T IQCA1 Missense_Mutation p.A277T 0.36 deleterious(0.01) possibly_damaging(0.882) TCGA-A6-2686-01 2 239016577 239016577 C - ESPNL Frame_Shift_Del p.L275Sfs*16 0.51 TCGA-A6-2686-01 2 240061415 240061415 C A HDAC4 Missense_Mutation p.G315C 0.48 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 2 240061432 240061432 C T HDAC4 Missense_Mutation p.S309N 0.48 tolerated(1) benign(0) TCGA-A6-2686-01 2 241696797 241696797 C T KIF1A Missense_Mutation p.A933T 0.22 tolerated(0.37) benign(0.002) TCGA-A6-2686-01 2 242148982 242148982 G A ANO7 Missense_Mutation p.E485K 0.15 deleterious(0.01) possibly_damaging(0.723) TCGA-A6-2686-01 2 242149969 242149969 C T ANO7 Silent p.H569H 0.12 TCGA-A6-2686-01 2 242181936 242181936 C A HDLBP Missense_Mutation p.R703M 0.62 deleterious(0) probably_damaging(0.93) TCGA-A6-2686-01 2 24253869 24253869 A G C2orf44 Silent p.F700F 0.42 TCGA-A6-2686-01 2 242618032 242618032 G A DTYMK Silent p.D121D 0.30 TCGA-A6-2686-01 2 25039673 25039673 C T CENPO Silent p.T251T 0.33 TCGA-A6-2686-01 2 25965670 25965672 TCT - ASXL2 In_Frame_Del p.E1178del 0.49 TCGA-A6-2686-01 2 26203816 26203816 C T KIF3C Missense_Mutation p.R324Q 0.45 probably_damaging(0.999) TCGA-A6-2686-01 2 26409121 26409121 G T GAREML Missense_Mutation p.G498C 0.32 deleterious(0.03) possibly_damaging(0.648) TCGA-A6-2686-01 2 26534346 26534346 C T GPR113 Silent p.Q750Q 0.08 TCGA-A6-2686-01 2 26677529 26677529 C T DRC1 Missense_Mutation p.P645L 0.33 tolerated(0.13) benign(0.013) TCGA-A6-2686-01 2 27305785 27305786 - G EMILIN1 Frame_Shift_Ins p.L452Afs*57 0.24 TCGA-A6-2686-01 2 27355996 27355996 G A PREB Missense_Mutation p.R179C 0.37 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 2 27428909 27428909 G A SLC5A6 Silent p.T188T 0.13 TCGA-A6-2686-01 2 27565746 27565747 - G GTF3C2 Frame_Shift_Ins p.E173* 0.35 TCGA-A6-2686-01 2 27600998 27600998 C - ZNF513 Frame_Shift_Del p.G347Vfs*33 0.31 TCGA-A6-2686-01 2 27667085 27667085 T - KRTCAP3 Intron 0.29 TCGA-A6-2686-01 2 27703943 27703943 C - IFT172 Frame_Shift_Del p.G252Afs*6 0.20 TCGA-A6-2686-01 2 28820908 28820908 C T PLB1 Silent p.T786T 0.32 TCGA-A6-2686-01 2 28865830 28865830 G A PLB1 Missense_Mutation p.G1427D 0.15 deleterious(0) possibly_damaging(0.893) TCGA-A6-2686-01 2 31360999 31360999 C - GALNT14 5'UTR 0.44 TCGA-A6-2686-01 2 32093499 32093499 C T MEMO1 Silent p.Q275Q 0.36 TCGA-A6-2686-01 2 33952175 33952175 G A AC009499.1 Intron 0.38 TCGA-A6-2686-01 2 37208635 37208635 A - HEATR5B Frame_Shift_Del p.*2072N 0.23 TCGA-A6-2686-01 2 37284589 37284589 C T HEATR5B Silent p.A698A 0.32 TCGA-A6-2686-01 2 38224602 38224605 TGTT - RMDN2 Frame_Shift_Del p.F509Efs*33 0.15 TCGA-A6-2686-01 2 39050236 39050236 C T DHX57 Missense_Mutation p.V1064M 0.40 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 2 39552904 39552904 C T MAP4K3 Silent p.P258P 0.35 TCGA-A6-2686-01 2 42488302 42488302 A - EML4 Frame_Shift_Del p.E130Rfs*43 0.34 TCGA-A6-2686-01 2 42720474 42720474 G A KCNG3 Silent p.R56R 0.31 TCGA-A6-2686-01 2 42990958 42990958 G A OXER1 Missense_Mutation p.T121M 0.16 tolerated(0.3) benign(0.036) TCGA-A6-2686-01 2 43452425 43452426 TT - ZFP36L2 Frame_Shift_Del p.K173Vfs*300 0.40 TCGA-A6-2686-01 2 43800084 43800084 C - THADA Frame_Shift_Del p.A593Lfs*5 0.30 TCGA-A6-2686-01 2 46987118 46987118 C T SOCS5 Silent p.S483S 0.20 TCGA-A6-2686-01 2 47356923 47356923 G T C2orf61 Intron 0.28 TCGA-A6-2686-01 2 47601096 47601096 G A EPCAM Missense_Mutation p.G112S 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-A6-2686-01 2 47602439 47602439 G A EPCAM Splice_Site p.X164_splice 0.13 TCGA-A6-2686-01 2 48018202 48018202 T - MSH6 Frame_Shift_Del p.F134Lfs*15 0.25 TCGA-A6-2686-01 2 48060148 48060148 A - FBXO11 Frame_Shift_Del p.F332Lfs*13 0.32 TCGA-A6-2686-01 2 48602420 48602420 A G FOXN2 Silent p.K378K 0.44 TCGA-A6-2686-01 2 50724557 50724558 - A NRXN1 Frame_Shift_Ins p.Q972Pfs*14 0.25 TCGA-A6-2686-01 2 54120828 54120828 G A PSME4 Missense_Mutation p.R1341C 0.36 deleterious(0) probably_damaging(0.972) TCGA-A6-2686-01 2 54856169 54856169 G A SPTBN1 Missense_Mutation p.R633H 0.28 tolerated(0.06) benign(0.135) TCGA-A6-2686-01 2 55176077 55176077 A - EML6 Frame_Shift_Del p.K1357Rfs*9 0.53 TCGA-A6-2686-01 2 55462017 55462019 GAA - RPS27A In_Frame_Del p.K83del 0.24 TCGA-A6-2686-01 2 56098243 56098243 T C EFEMP1 Missense_Mutation p.E339G 0.09 deleterious(0) possibly_damaging(0.662) TCGA-A6-2686-01 2 5836217 5836217 G A SOX11 3'UTR 0.12 TCGA-A6-2686-01 2 5838010 5838010 C T SOX11 3'UTR 0.40 TCGA-A6-2686-01 2 5841056 5841056 G - SOX11 3'UTR 0.21 TCGA-A6-2686-01 2 62901012 62901012 T C EHBP1 5'UTR 0.27 TCGA-A6-2686-01 2 64189193 64189193 G A VPS54 Missense_Mutation p.R337W 0.33 deleterious(0.01) possibly_damaging(0.908) TCGA-A6-2686-01 2 64189373 64189373 C T VPS54 Missense_Mutation p.A277T 0.23 tolerated(0.23) benign(0.035) TCGA-A6-2686-01 2 68691485 68691485 A T FBXO48 Missense_Mutation p.N108K 0.16 deleterious(0) probably_damaging(0.976) TCGA-A6-2686-01 2 68882033 68882033 G A PROKR1 Silent p.P169P 0.39 TCGA-A6-2686-01 2 69046341 69046341 C - ARHGAP25 Frame_Shift_Del p.P365Lfs*17 0.24 TCGA-A6-2686-01 2 69553217 69553217 A - GFPT1 3'UTR 0.37 TCGA-A6-2686-01 2 69565163 69565163 C T GFPT1 Missense_Mutation p.G450D 0.31 deleterious(0) benign(0.265) TCGA-A6-2686-01 2 71209079 71209079 G A ANKRD53 Missense_Mutation p.G211S 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-A6-2686-01 2 71825762 71825762 C A DYSF Missense_Mutation p.P1215T 0.17 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 2 73115699 73115699 G T SPR Missense_Mutation p.E187D 0.38 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 2 74273866 74273866 C T TET3 Silent p.C139C 0.10 TCGA-A6-2686-01 2 74326668 74326670 AGG - TET3 In_Frame_Del p.E1044del 0.50 TCGA-A6-2686-01 2 74668833 74668833 C A RTKN Missense_Mutation p.E37D 0.18 deleterious(0.05) possibly_damaging(0.497) TCGA-A6-2686-01 2 74719521 74719521 T C TTC31 Silent p.P370P 0.61 TCGA-A6-2686-01 2 74900916 74900916 C T SEMA4F Silent p.Y261Y 0.16 TCGA-A6-2686-01 2 75113659 75113659 T C HK2 Missense_Mutation p.V693A 0.33 deleterious(0.05) possibly_damaging(0.524) TCGA-A6-2686-01 2 75874292 75874292 G A MRPL19 Silent p.P56P 0.14 TCGA-A6-2686-01 2 80529621 80529621 C T LRRTM1 Missense_Mutation p.V442M 0.26 tolerated(0.06) benign(0.032) TCGA-A6-2686-01 2 84517881 84517881 C T FUNDC2P2 RNA 0.15 TCGA-A6-2686-01 2 84811138 84811138 G A DNAH6 Missense_Mutation p.D749N 0.32 tolerated(0.31) benign(0.001) TCGA-A6-2686-01 2 84960571 84960571 C T DNAH6 Missense_Mutation p.R3404C 0.30 tolerated(0.14) possibly_damaging(0.892) TCGA-A6-2686-01 2 85529635 85529635 C T TCF7L1 Missense_Mutation p.P185L 0.25 deleterious(0) possibly_damaging(0.453) TCGA-A6-2686-01 2 85570232 85570232 C T RETSAT 3'UTR 0.17 TCGA-A6-2686-01 2 85780537 85780537 G A GGCX Nonsense_Mutation p.R325* 0.32 TCGA-A6-2686-01 2 85846392 85846392 G A USP39 Silent p.P106P 0.21 TCGA-A6-2686-01 2 86067238 86067238 G A ST3GAL5 3'UTR 0.38 TCGA-A6-2686-01 2 86258503 86258503 G A POLR1A Missense_Mutation p.P1510S 0.35 tolerated(1) benign(0.004) TCGA-A6-2686-01 2 86302261 86302261 G A POLR1A Silent p.D501D 0.32 TCGA-A6-2686-01 2 86406651 86406651 G A IMMT Missense_Mutation p.R72W 0.24 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 2 95537500 95537500 G A TEKT4 Missense_Mutation p.R59H 0.40 tolerated(0.15) probably_damaging(0.967) TCGA-A6-2686-01 2 96078466 96078466 C - FAHD2A Frame_Shift_Del p.P281Qfs*26 0.38 TCGA-A6-2686-01 2 97024805 97024805 G A NCAPH Missense_Mutation p.D411N 0.41 tolerated(0.15) benign(0.135) TCGA-A6-2686-01 2 97271184 97271184 T C KANSL3 Silent p.R602R 0.34 TCGA-A6-2686-01 2 97462842 97462842 T C CNNM4 Missense_Mutation p.V499A 0.32 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 2 97527561 97527561 G A SEMA4C Missense_Mutation p.S505F 0.16 deleterious(0.02) benign(0.009) TCGA-A6-2686-01 2 98273346 98273346 C T ACTR1B Missense_Mutation p.R369H 0.44 deleterious(0.02) possibly_damaging(0.849) TCGA-A6-2686-01 2 98351795 98351795 A G ZAP70 Missense_Mutation p.I389V 0.36 tolerated(0.84) benign(0.007) TCGA-A6-2686-01 2 98428942 98428942 G A TMEM131 Missense_Mutation p.T602I 0.39 deleterious(0.01) possibly_damaging(0.71) TCGA-A6-2686-01 2 99279887 99279888 - A MGAT4A Intron 0.15 TCGA-A6-2686-01 2 99985048 99985048 A G EIF5B Missense_Mutation p.K461E 0.15 benign(0.021) TCGA-A6-2686-01 3 100170780 100170780 G C LNP1 Missense_Mutation p.R125P 0.35 deleterious(0.03) benign(0.059) TCGA-A6-2686-01 3 101395568 101395568 A G ZBTB11 Missense_Mutation p.V64A 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A6-2686-01 3 101540643 101540644 - T NXPE3 Frame_Shift_Ins p.R510Sfs*31 0.13 TCGA-A6-2686-01 3 107096430 107096430 G T CCDC54 5'UTR 0.42 TCGA-A6-2686-01 3 109129032 109129032 G A RP11-702L6.4 RNA 0.44 TCGA-A6-2686-01 3 111604015 111604015 C T PHLDB2 Missense_Mutation p.P364L 0.40 deleterious(0) benign(0.087) TCGA-A6-2686-01 3 112642632 112642632 G T CD200R1 Silent p.P313P 0.35 TCGA-A6-2686-01 3 112729968 112729968 T - C3orf17 Frame_Shift_Del p.A280Lfs*4 0.15 TCGA-A6-2686-01 3 113442939 113442939 G A NAA50 Silent p.S4S 0.23 TCGA-A6-2686-01 3 113679538 113679538 A - ZDHHC23 Intron 0.23 TCGA-A6-2686-01 3 118865777 118865777 C T C3orf30 Silent p.S247S 0.33 TCGA-A6-2686-01 3 1189726 1189726 C T CNTN6 Missense_Mutation p.P12S 0.31 tolerated(1) benign(0) TCGA-A6-2686-01 3 119962580 119962580 G T GPR156 Missense_Mutation p.P47H 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 3 121340941 121340941 T C FBXO40 Missense_Mutation p.F222S 0.47 deleterious(0) probably_damaging(0.915) TCGA-A6-2686-01 3 122003527 122003527 C - CASR Frame_Shift_Del p.S921Pfs*28 0.22 TCGA-A6-2686-01 3 122254987 122254987 G A PARP9 Intron 0.40 TCGA-A6-2686-01 3 122545705 122545705 G A DIRC2 Missense_Mutation p.A166T 0.29 tolerated(0.12) benign(0.053) TCGA-A6-2686-01 3 123010142 123010142 C T ADCY5 Missense_Mutation p.A1049T 0.41 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 3 123038565 123038565 G A ADCY5 Missense_Mutation p.R738C 0.47 deleterious(0) possibly_damaging(0.892) TCGA-A6-2686-01 3 123419158 123419158 C T MYLK Missense_Mutation p.A1053T 0.25 tolerated(0.16) possibly_damaging(0.588) TCGA-A6-2686-01 3 123634400 123634400 C T CCDC14 Silent p.K655K 0.33 TCGA-A6-2686-01 3 124540252 124540252 C T ITGB5 Missense_Mutation p.A284T 0.27 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 3 124567336 124567336 A G ITGB5 Missense_Mutation p.M144T 0.42 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 3 124854535 124854535 C T SLC12A8 Silent p.G238G 0.09 TCGA-A6-2686-01 3 124951978 124951978 T C ZNF148 Missense_Mutation p.H531R 0.15 deleterious(0.02) benign(0.096) TCGA-A6-2686-01 3 126737281 126737281 C T PLXNA1 Missense_Mutation p.R1269C 0.34 deleterious(0) probably_damaging(0.964) TCGA-A6-2686-01 3 127783809 127783809 C T SEC61A1 Missense_Mutation p.R236C 0.16 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 3 128292627 128292627 T C C3orf27 5'UTR 0.27 TCGA-A6-2686-01 3 129130100 129130100 C A EFCAB12 Silent p.T312T 0.46 TCGA-A6-2686-01 3 12977779 12977779 C T IQSEC1 Missense_Mutation p.C260Y 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-A6-2686-01 3 130368343 130368343 G A COL6A6 Silent p.A1890A 0.40 TCGA-A6-2686-01 3 130686176 130686176 G T ATP2C1 Silent p.A441A 0.32 TCGA-A6-2686-01 3 132063855 132063855 T C ACPP Missense_Mutation p.S245P 0.23 tolerated(0.16) probably_damaging(0.988) TCGA-A6-2686-01 3 132071644 132071644 G A ACPP Silent p.L315L 0.36 TCGA-A6-2686-01 3 133099834 133099834 G A TMEM108 Missense_Mutation p.G427S 0.23 deleterious(0) probably_damaging(0.971) TCGA-A6-2686-01 3 133335731 133335731 T - TOPBP1 Frame_Shift_Del p.K1266Nfs*10 0.13 TCGA-A6-2686-01 3 133342976 133342976 G A TOPBP1 Missense_Mutation p.R950W 0.15 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 3 133583451 133583451 C T RAB6B Missense_Mutation p.D36N 0.33 deleterious(0.01) benign(0.135) TCGA-A6-2686-01 3 133648420 133648420 G A C3orf36 5'UTR 0.14 TCGA-A6-2686-01 3 133654737 133654737 C T SLCO2A1 Nonsense_Mutation p.W565* 0.22 TCGA-A6-2686-01 3 134251733 134251733 A - CEP63 Frame_Shift_Del p.I146* 0.22 TCGA-A6-2686-01 3 136192444 136192444 C T STAG1 Silent p.L354L 0.15 TCGA-A6-2686-01 3 137822526 137822526 G A DZIP1L Silent p.Y96Y 0.57 TCGA-A6-2686-01 3 138375112 138375112 G A PIK3CB Missense_Mutation p.R983C 0.49 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 3 140695319 140695319 A - SLC25A36 3'UTR 0.40 TCGA-A6-2686-01 3 141161309 141161309 C T ZBTB38 Missense_Mutation p.R27C 0.44 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 3 14154542 14154542 G A CHCHD4 Missense_Mutation p.R105W 0.26 tolerated(0.16) benign(0.016) TCGA-A6-2686-01 3 142769864 142769864 A G U2SURP Silent p.E876E 0.32 TCGA-A6-2686-01 3 142841022 142841022 C T CHST2 Missense_Mutation p.A455V 0.21 tolerated(0.94) possibly_damaging(0.626) TCGA-A6-2686-01 3 143708570 143708570 C T C3orf58 Missense_Mutation p.R394W 0.12 deleterious(0.01) possibly_damaging(0.648) TCGA-A6-2686-01 3 150127156 150127158 AAG - TSC22D2 In_Frame_Del p.K9del 0.18 TCGA-A6-2686-01 3 150340211 150340211 G A SELT Missense_Mutation p.M59I 0.15 tolerated(0.14) benign(0.001) TCGA-A6-2686-01 3 150877786 150877786 C - MED12L Frame_Shift_Del p.G338Afs*4 0.36 TCGA-A6-2686-01 3 151545693 151545693 T A AADAC Nonsense_Mutation p.Y311* 0.42 TCGA-A6-2686-01 3 154017707 154017707 G A DHX36 Missense_Mutation p.A490V 0.29 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 3 15455535 15455535 A - METTL6 Frame_Shift_Del p.F222Lfs*19 0.20 TCGA-A6-2686-01 3 155199210 155199210 G A PLCH1 Silent p.T1543T 0.29 TCGA-A6-2686-01 3 160003622 160003622 C T IFT80 Silent p.P450P 0.12 TCGA-A6-2686-01 3 160395363 160395363 T C ARL14 Missense_Mutation p.C77R 0.20 deleterious(0.02) benign(0.078) TCGA-A6-2686-01 3 160804404 160804404 C T B3GALNT1 Missense_Mutation p.V47M 0.44 tolerated(0.26) benign(0.072) TCGA-A6-2686-01 3 16260908 16260908 A C GALNT15 Splice_Site p.X465_splice 0.50 TCGA-A6-2686-01 3 167196500 167196500 T C WDR49 3'UTR 0.58 TCGA-A6-2686-01 3 169485751 169485751 A G ACTRT3 Silent p.G196G 0.40 TCGA-A6-2686-01 3 17131376 17131376 A - PLCL2 Frame_Shift_Del p.A995Qfs*19 0.45 TCGA-A6-2686-01 3 171969134 171969134 G A FNDC3B Missense_Mutation p.R198H 0.15 deleterious(0) possibly_damaging(0.891) TCGA-A6-2686-01 3 172115125 172115125 G T FNDC3B Missense_Mutation p.G1159W 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-A6-2686-01 3 172643141 172643141 A C SPATA16 Missense_Mutation p.F408C 0.39 deleterious(0) possibly_damaging(0.878) TCGA-A6-2686-01 3 179123124 179123124 G A GNB4 Missense_Mutation p.A257V 0.23 deleterious(0) benign(0.299) TCGA-A6-2686-01 3 180688050 180688050 C A FXR1 Missense_Mutation p.R503S 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A6-2686-01 3 181431308 181431308 C T SOX2 3'UTR 0.36 TCGA-A6-2686-01 3 183209885 183209885 G A KLHL6 Missense_Mutation p.R566W 0.35 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 3 183700657 183700657 A G ABCC5 Missense_Mutation p.Y244H 0.24 deleterious(0.01) possibly_damaging(0.665) TCGA-A6-2686-01 3 183951468 183951468 C - VWA5B2 Frame_Shift_Del p.P213Hfs*10 0.39 TCGA-A6-2686-01 3 184044357 184044357 G T EIF4G1 Missense_Mutation p.G1096W 0.15 deleterious(0) probably_damaging(0.972) TCGA-A6-2686-01 3 184076893 184076893 A G CLCN2 Silent p.L30L 0.46 TCGA-A6-2686-01 3 184571791 184571791 T C VPS8 Missense_Mutation p.L323S 0.19 deleterious(0) probably_damaging(0.987) TCGA-A6-2686-01 3 185198157 185198157 G T MAP3K13 Missense_Mutation p.R880L 0.22 deleterious_low_confidence(0.01) benign(0.024) TCGA-A6-2686-01 3 186395544 186395544 C T HRG Missense_Mutation p.H484Y 0.36 deleterious(0.03) benign(0.022) TCGA-A6-2686-01 3 186964880 186964880 T - MASP1 Intron 0.58 TCGA-A6-2686-01 3 187446270 187446270 G - BCL6 Frame_Shift_Del p.P473Rfs*117 0.39 TCGA-A6-2686-01 3 190995930 190995930 T C UTS2B Missense_Mutation p.T45A 0.34 tolerated(0.27) benign(0.001) TCGA-A6-2686-01 3 193120347 193120347 C T ATP13A4 3'UTR 0.27 TCGA-A6-2686-01 3 19479844 19479844 C T KCNH8 Silent p.L456L 0.42 TCGA-A6-2686-01 3 195250549 195250549 C T PPP1R2 Missense_Mutation p.R115Q 0.37 tolerated(0.93) benign(0.009) TCGA-A6-2686-01 3 195511926 195511926 G T MUC4 Silent p.T2175T 0.34 TCGA-A6-2686-01 3 19556882 19556882 G A KCNH8 Missense_Mutation p.R835Q 0.40 tolerated(0.97) benign(0.001) TCGA-A6-2686-01 3 196541368 196541368 G - PAK2 Frame_Shift_Del p.S330Hfs*6 0.30 TCGA-A6-2686-01 3 196846341 196846341 G A DLG1 Missense_Mutation p.A442V 0.40 tolerated(0.27) benign(0.003) TCGA-A6-2686-01 3 19961396 19961396 A - EFHB Frame_Shift_Del p.Y309Tfs*13 0.19 TCGA-A6-2686-01 3 20212216 20212216 T - SGOL1 Frame_Shift_Del p.R522Efs*39 0.23 TCGA-A6-2686-01 3 24164507 24164507 C T THRB Nonsense_Mutation p.W418* 0.23 TCGA-A6-2686-01 3 3194171 3194171 G T CRBN Silent p.R373R 0.20 TCGA-A6-2686-01 3 32931912 32931912 C T TRIM71 Nonsense_Mutation p.Q406* 0.47 TCGA-A6-2686-01 3 33896701 33896701 A T PDCD6IP Missense_Mutation p.K695I 0.28 deleterious(0) probably_damaging(0.989) TCGA-A6-2686-01 3 36779145 36779145 G A DCLK3 Missense_Mutation p.R336W 0.28 tolerated(0.05) benign(0.014) TCGA-A6-2686-01 3 36874873 36874873 G A TRANK1 Silent p.Y2023Y 0.33 TCGA-A6-2686-01 3 38017268 38017268 A G CTDSPL Silent p.S196S 0.33 TCGA-A6-2686-01 3 3887677 3887677 C A LRRN1 Missense_Mutation p.A451D 0.57 deleterious(0) probably_damaging(0.939) TCGA-A6-2686-01 3 3888263 3888263 G A LRRN1 Silent p.A646A 0.35 TCGA-A6-2686-01 3 40503599 40503599 C T RPL14 Missense_Mutation p.A175V 0.47 tolerated_low_confidence(0.06) unknown(0) TCGA-A6-2686-01 3 42727600 42727600 G A KLHL40 Missense_Mutation p.A164T 0.38 tolerated(0.15) benign(0.014) TCGA-A6-2686-01 3 42787475 42787475 G A CCDC13 Silent p.L255L 0.33 TCGA-A6-2686-01 3 43389909 43389909 C T SNRK Missense_Mutation p.R720W 0.37 deleterious_low_confidence(0) benign(0.405) TCGA-A6-2686-01 3 43618372 43618372 C T ANO10 Missense_Mutation p.C325Y 0.17 tolerated(0.08) probably_damaging(0.979) TCGA-A6-2686-01 3 45038731 45038731 A G EXOSC7 Missense_Mutation p.Y136C 0.30 deleterious(0.01) probably_damaging(0.938) TCGA-A6-2686-01 3 45542053 45542053 A - LARS2 Frame_Shift_Del p.M583Wfs*51 0.27 TCGA-A6-2686-01 3 45773576 45773576 A - SACM1L Frame_Shift_Del p.N346Ifs*2 0.24 TCGA-A6-2686-01 3 45800611 45800611 G A SLC6A20 Silent p.L546L 0.32 TCGA-A6-2686-01 3 45869995 45869995 T G LZTFL1 Missense_Mutation p.E238A 0.38 tolerated(0.41) benign(0.034) TCGA-A6-2686-01 3 46245144 46245144 C A CCR1 Missense_Mutation p.G221W 0.25 deleterious(0) probably_damaging(0.985) TCGA-A6-2686-01 3 46724747 46724747 G T ALS2CL Missense_Mutation p.L328M 0.38 tolerated(0.2) benign(0.024) TCGA-A6-2686-01 3 47037798 47037798 G A NBEAL2 Missense_Mutation p.R730H 0.23 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 3 47882464 47882464 G A DHX30 Missense_Mutation p.R155H 0.57 tolerated_low_confidence(0.06) benign(0.075) TCGA-A6-2686-01 3 48342866 48342866 G A NME6 5'Flank 0.38 TCGA-A6-2686-01 3 48455209 48455209 G A PLXNB1 Missense_Mutation p.R1469C 0.43 deleterious(0.05) benign(0.386) TCGA-A6-2686-01 3 48493208 48493208 C T ATRIP Missense_Mutation p.T152M 0.26 tolerated(0.62) benign(0.016) TCGA-A6-2686-01 3 48502197 48502197 A G ATRIP Missense_Mutation p.R582G 0.38 deleterious(0.02) probably_damaging(0.909) TCGA-A6-2686-01 3 48677514 48677514 C G CELSR3 Missense_Mutation p.Q3168H 0.24 tolerated_low_confidence(0.11) benign(0.001) TCGA-A6-2686-01 3 48679324 48679324 G A CELSR3 Silent p.C2928C 0.16 TCGA-A6-2686-01 3 48680306 48680306 G T CELSR3 Silent p.A2806A 0.25 TCGA-A6-2686-01 3 49137481 49137481 C T QARS Missense_Mutation p.R403Q 0.16 deleterious(0) probably_damaging(0.987) TCGA-A6-2686-01 3 49201624 49201624 C T CCDC71 Silent p.Q6Q 0.24 TCGA-A6-2686-01 3 49690072 49690072 G A BSN Missense_Mutation p.R1028H 0.27 unknown(0) TCGA-A6-2686-01 3 49690628 49690628 C T BSN Silent p.G1213G 0.36 TCGA-A6-2686-01 3 49691045 49691045 C - BSN Frame_Shift_Del p.L1354Sfs*17 0.23 TCGA-A6-2686-01 3 49765013 49765013 G A IP6K1 Missense_Mutation p.R290C 0.39 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 3 49927457 49927457 G A MST1R Missense_Mutation p.R1283W 0.31 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 3 49947685 49947685 G A MON1A Missense_Mutation p.R513C 0.26 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 3 50225394 50225394 C T SEMA3F Missense_Mutation p.A735V 0.41 deleterious(0.03) benign(0.071) TCGA-A6-2686-01 3 50328073 50328073 A G IFRD2 Silent p.S96S 0.26 TCGA-A6-2686-01 3 50404460 50404460 G A CACNA2D2 Missense_Mutation p.R835C 0.25 deleterious(0.01) possibly_damaging(0.857) TCGA-A6-2686-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.48 TCGA-A6-2686-01 3 52818324 52818324 G A ITIH1 Missense_Mutation p.R413H 0.50 tolerated(0.55) benign(0.052) TCGA-A6-2686-01 3 53213699 53213699 G A PRKCD Missense_Mutation p.M74I 0.27 tolerated(0.17) benign(0.265) TCGA-A6-2686-01 3 53531365 53531365 G A CACNA1D Missense_Mutation p.R85H 0.46 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 3 53894255 53894255 G A IL17RB Missense_Mutation p.E316K 0.23 tolerated(0.47) benign(0.006) TCGA-A6-2686-01 3 56661154 56661155 - AA FAM208A Frame_Shift_Ins p.L1350Ffs*2 0.18 TCGA-A6-2686-01 3 57132156 57132156 C T IL17RD Silent p.T525T 0.20 TCGA-A6-2686-01 3 57294144 57294144 G A APPL1 Splice_Site p.X553_splice 0.56 TCGA-A6-2686-01 3 57627425 57627425 G T DENND6A Missense_Mutation p.Q363K 0.26 tolerated(0.12) benign(0.159) TCGA-A6-2686-01 3 58120431 58120431 A G FLNB Missense_Mutation p.S1566G 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-A6-2686-01 3 58899477 58899477 G A C3orf67 Silent p.I44I 0.17 TCGA-A6-2686-01 3 63823659 63823660 - T THOC7 Frame_Shift_Ins p.N115Kfs*6 0.11 TCGA-A6-2686-01 3 63982044 63982044 G A ATXN7 Missense_Mutation p.S849N 0.26 tolerated(0.19) benign(0.003) TCGA-A6-2686-01 3 64004675 64004675 C T PSMD6 Missense_Mutation p.R179H 0.34 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 3 64085259 64085259 C T PRICKLE2 Missense_Mutation p.R668H 0.43 deleterious(0.03) benign(0.016) TCGA-A6-2686-01 3 65367632 65367632 T A MAGI1 Missense_Mutation p.Q874L 0.48 deleterious(0.01) probably_damaging(0.954) TCGA-A6-2686-01 3 73433947 73433947 G A PDZRN3 Silent p.G590G 0.63 TCGA-A6-2686-01 3 8675476 8675476 G T SSUH2 Missense_Mutation p.P72H 0.38 deleterious(0) probably_damaging(0.995) TCGA-A6-2686-01 3 96533594 96533595 - G EPHA6 Frame_Shift_Ins p.R45Afs*48 0.35 TCGA-A6-2686-01 3 9756619 9756619 C T CPNE9 Silent p.Y224Y 0.12 TCGA-A6-2686-01 3 97614840 97614840 C T CRYBG3 Nonsense_Mutation p.Q590* 0.20 TCGA-A6-2686-01 3 9786059 9786059 C T BRPF1 Silent p.H929H 0.24 TCGA-A6-2686-01 3 97983379 97983379 T C OR5H6 Missense_Mutation p.F84S 0.07 deleterious(0) probably_damaging(0.917) TCGA-A6-2686-01 3 98531234 98531234 T C DCBLD2 Silent p.Q435Q 0.16 TCGA-A6-2686-01 4 100532349 100532349 C T MTTP Missense_Mutation p.R607C 0.30 deleterious(0.03) possibly_damaging(0.899) TCGA-A6-2686-01 4 100789398 100789398 C T DAPP1 3'UTR 0.26 TCGA-A6-2686-01 4 102251532 102251532 C T PPP3CA Intron 0.30 TCGA-A6-2686-01 4 103789922 103789922 G A UBE2D3 5'UTR 0.24 TCGA-A6-2686-01 4 109684032 109684032 C T ETNPPL Missense_Mutation p.R8Q 0.54 tolerated(0.81) benign(0) TCGA-A6-2686-01 4 110662031 110662032 - AG CFI 3'UTR 0.28 TCGA-A6-2686-01 4 111397718 111397718 G A ENPEP Missense_Mutation p.G50R 0.38 tolerated(0.13) benign(0.188) TCGA-A6-2686-01 4 113181970 113181970 T C AP1AR Silent p.D78D 0.23 TCGA-A6-2686-01 4 114203949 114203949 A G ANK2 Missense_Mutation p.H667R 0.33 probably_damaging(1) TCGA-A6-2686-01 4 119059351 119059351 A C NDST3 Missense_Mutation p.K456T 0.35 deleterious(0.01) probably_damaging(0.946) TCGA-A6-2686-01 4 122681540 122681540 A - TMEM155 Frame_Shift_Del p.L101* 0.29 TCGA-A6-2686-01 4 122800762 122800762 T - TRPC3 3'UTR 0.18 TCGA-A6-2686-01 4 122872744 122872744 G A TRPC3 Missense_Mutation p.A31V 0.39 tolerated_low_confidence(0.09) benign(0.002) TCGA-A6-2686-01 4 123342504 123342504 A G ADAD1 Missense_Mutation p.K526E 0.31 tolerated(0.45) benign(0.031) TCGA-A6-2686-01 4 126238167 126238167 C T FAT4 Missense_Mutation p.H201Y 0.60 probably_damaging(0.999) TCGA-A6-2686-01 4 126238384 126238384 C T FAT4 Missense_Mutation p.A273V 0.45 benign(0.327) TCGA-A6-2686-01 4 128651809 128651809 G A SLC25A31 Missense_Mutation p.A37T 0.15 tolerated(0.09) benign(0.004) TCGA-A6-2686-01 4 128722302 128722302 T - HSPA4L Frame_Shift_Del p.F148Lfs*9 0.22 TCGA-A6-2686-01 4 134071736 134071736 C T PCDH10 Silent p.F147F 0.43 TCGA-A6-2686-01 4 140624683 140624683 A - MGST2 Frame_Shift_Del p.K103Nfs*8 0.22 TCGA-A6-2686-01 4 141321549 141321549 T - CLGN Frame_Shift_Del p.K219Sfs*14 0.14 TCGA-A6-2686-01 4 147560228 147560228 C T POU4F2 5'UTR 0.47 TCGA-A6-2686-01 4 148555644 148555644 G T TMEM184C 3'UTR 0.57 TCGA-A6-2686-01 4 148802995 148802995 G A ARHGAP10 Missense_Mutation p.G316R 0.29 tolerated(0.39) probably_damaging(0.962) TCGA-A6-2686-01 4 148803053 148803053 G A ARHGAP10 Missense_Mutation p.R335K 0.25 deleterious(0) probably_damaging(0.97) TCGA-A6-2686-01 4 148887925 148887925 G A ARHGAP10 Missense_Mutation p.A551T 0.15 deleterious(0) probably_damaging(0.977) TCGA-A6-2686-01 4 148993236 148993236 C A ARHGAP10 3'UTR 0.48 TCGA-A6-2686-01 4 151504433 151504433 C T MAB21L2 Silent p.G84G 0.24 TCGA-A6-2686-01 4 153244184 153244184 C T FBXW7 Missense_Mutation p.R658Q 0.40 tolerated(0.15) probably_damaging(0.993) TCGA-A6-2686-01 4 155250706 155250707 - G DCHS2 Frame_Shift_Ins p.Q841Pfs*31 0.25 TCGA-A6-2686-01 4 155412123 155412123 G A DCHS2 Missense_Mutation p.R129W 0.70 deleterious(0) probably_damaging(0.983) TCGA-A6-2686-01 4 155457812 155457820 AGAGAGAGA GAGAGAG PLRG1 3'UTR 0.09 TCGA-A6-2686-01 4 155526070 155526070 G C FGG Missense_Mutation p.H426Q 0.53 tolerated_low_confidence(0.21) benign(0.014) TCGA-A6-2686-01 4 15826613 15826613 C A CD38 Missense_Mutation p.T158K 0.45 tolerated(0.54) benign(0.012) TCGA-A6-2686-01 4 158281222 158281222 G A GRIA2 Missense_Mutation p.D740N 0.49 tolerated(0.06) probably_damaging(0.999) TCGA-A6-2686-01 4 160277249 160277249 G A RAPGEF2 Silent p.P1471P 0.42 TCGA-A6-2686-01 4 164048168 164048168 G A NAF1 3'Flank 0.25 TCGA-A6-2686-01 4 164428285 164428285 A - TMA16 Frame_Shift_Del p.K37Rfs*4 0.16 TCGA-A6-2686-01 4 167675841 167675841 A T SPOCK3 Missense_Mutation p.L253H 0.16 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 4 169432794 169432794 C T PALLD Missense_Mutation p.R47W 0.52 deleterious(0) possibly_damaging(0.847) TCGA-A6-2686-01 4 174449871 174449871 C - HAND2 Intron 0.45 TCGA-A6-2686-01 4 175564816 175564816 T C GLRA3 3'UTR 0.39 TCGA-A6-2686-01 4 175604004 175604004 G T GLRA3 Missense_Mutation p.L221M 0.17 tolerated(0.14) possibly_damaging(0.606) TCGA-A6-2686-01 4 183064150 183064150 G A AC108142.1 RNA 0.44 TCGA-A6-2686-01 4 186598461 186598461 C T SORBS2 Intron 0.45 TCGA-A6-2686-01 4 186598561 186598561 T C SORBS2 Intron 0.39 TCGA-A6-2686-01 4 187179211 187179211 G A KLKB1 Missense_Mutation p.G588R 0.19 tolerated(0.12) possibly_damaging(0.813) TCGA-A6-2686-01 4 187629765 187629765 G T FAT1 Missense_Mutation p.P406H 0.15 possibly_damaging(0.469) TCGA-A6-2686-01 4 20734306 20734307 - A KCNIP4 Frame_Shift_Ins p.Q214Sfs*7 0.19 TCGA-A6-2686-01 4 22389156 22389156 A - GPR125 3'UTR 0.46 TCGA-A6-2686-01 4 25769407 25769407 A G SEL1L3 Silent p.I905I 0.62 TCGA-A6-2686-01 4 38828699 38828699 T - TLR6 3'UTR 0.26 TCGA-A6-2686-01 4 39448347 39448347 C T KLB Silent p.A667A 0.38 TCGA-A6-2686-01 4 39482782 39482782 G A LIAS 3'Flank 0.89 TCGA-A6-2686-01 4 41987695 41987695 G T DCAF4L1 3'UTR 0.55 TCGA-A6-2686-01 4 41987696 41987696 T G DCAF4L1 3'UTR 0.55 TCGA-A6-2686-01 4 44626673 44626673 A G YIPF7 Missense_Mutation p.Y209H 0.15 deleterious(0.02) probably_damaging(1) TCGA-A6-2686-01 4 44680723 44680723 G C GUF1 Silent p.P28P 0.15 TCGA-A6-2686-01 4 47605609 47605609 G A CORIN Missense_Mutation p.R873C 0.13 deleterious(0.04) probably_damaging(0.982) TCGA-A6-2686-01 4 47942829 47942829 G A CNGA1 Silent p.Y274Y 0.04 TCGA-A6-2686-01 4 48485665 48485665 C - SLC10A4 Frame_Shift_Del p.G31Afs*71 0.64 TCGA-A6-2686-01 4 48862930 48862931 - A OCIAD1 3'UTR 0.70 TCGA-A6-2686-01 4 52895881 52895881 C T SGCB Missense_Mutation p.R131Q 0.23 tolerated(0.18) benign(0.434) TCGA-A6-2686-01 4 54373589 54373589 T - LNX1 Frame_Shift_Del p.I224* 0.28 TCGA-A6-2686-01 4 55131063 55131063 C T PDGFRA Intron 0.31 TCGA-A6-2686-01 4 55604621 55604621 C T KIT Silent p.S943S 0.19 TCGA-A6-2686-01 4 5586526 5586526 C T EVC2 Missense_Mutation p.G961R 0.64 tolerated(0.3) possibly_damaging(0.777) TCGA-A6-2686-01 4 55948753 55948753 T - KDR Frame_Shift_Del p.T1238Hfs*7 0.39 TCGA-A6-2686-01 4 56890689 56890689 C T CEP135 Missense_Mutation p.R1115C 0.47 deleterious(0) probably_damaging(0.975) TCGA-A6-2686-01 4 62542587 62542588 - T LPHN3 Frame_Shift_Ins p.P107Sfs*9 0.36 TCGA-A6-2686-01 4 68357968 68357968 A T CENPC Silent p.G815G 0.11 TCGA-A6-2686-01 4 69096960 69096960 C T TMPRSS11B Missense_Mutation p.S216N 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-A6-2686-01 4 69535921 69535921 A G UGT2B15 Missense_Mutation p.M139T 0.41 tolerated(0.99) benign(0.001) TCGA-A6-2686-01 4 70592750 70592750 C T SULT1B1 3'UTR 0.11 TCGA-A6-2686-01 4 71472424 71472424 G A AMBN Missense_Mutation p.A441T 0.33 tolerated(0.13) benign(0.017) TCGA-A6-2686-01 4 71654637 71654637 C T RUFY3 Nonsense_Mutation p.Q396* 0.14 TCGA-A6-2686-01 4 71698064 71698064 A C GRSF1 Silent p.P258P 0.34 TCGA-A6-2686-01 4 72338798 72338798 T - SLC4A4 Intron 0.48 TCGA-A6-2686-01 4 74441817 74441817 T - RASSF6 3'UTR 0.37 TCGA-A6-2686-01 4 74702486 74702486 C T CXCL6 Missense_Mutation p.R7C 0.41 deleterious(0) benign(0.353) TCGA-A6-2686-01 4 77662867 77662867 G A SHROOM3 Missense_Mutation p.G1181R 0.27 tolerated(0.13) benign(0.032) TCGA-A6-2686-01 4 78808419 78808419 G A MRPL1 Missense_Mutation p.A178T 0.16 tolerated(0.08) benign(0.16) TCGA-A6-2686-01 4 79462124 79462124 T C FRAS1 Missense_Mutation p.V3962A 0.09 benign(0.003) TCGA-A6-2686-01 4 8229777 8229777 G A SH3TC1 Missense_Mutation p.G786S 0.25 tolerated(0.44) benign(0.374) TCGA-A6-2686-01 4 83411235 83411235 T C TMEM150C Missense_Mutation p.I174V 0.23 tolerated(0.6) benign(0.003) TCGA-A6-2686-01 4 84382360 84382360 C T MRPS18C 3'UTR 0.31 TCGA-A6-2686-01 4 87653901 87653901 G A PTPN13 Missense_Mutation p.A614T 0.19 deleterious(0) probably_damaging(0.936) TCGA-A6-2686-01 4 89442806 89442806 C T PIGY Silent p.L45L 0.20 TCGA-A6-2686-01 4 90874684 90874685 - T MMRN1 3'UTR 0.33 TCGA-A6-2686-01 4 95220597 95220597 C T HPGDS 3'UTR 0.45 TCGA-A6-2686-01 4 96470055 96470055 C T UNC5C 5'UTR 0.42 TCGA-A6-2686-01 4 96761378 96761378 G A PDHA2 Missense_Mutation p.R26H 0.14 tolerated(0.57) benign(0.24) TCGA-A6-2686-01 4 96761892 96761892 G A PDHA2 Silent p.A197A 0.38 TCGA-A6-2686-01 4 9785324 9785324 A G DRD5 3'UTR 0.40 TCGA-A6-2686-01 4 9785349 9785349 G C DRD5 3'UTR 0.56 TCGA-A6-2686-01 4 9785366 9785366 T - DRD5 3'UTR 0.20 TCGA-A6-2686-01 4 995871 995871 C T IDUA Silent p.D298D 0.50 TCGA-A6-2686-01 5 1033561 1033561 G A NKD2 Missense_Mutation p.A93T 0.45 tolerated(0.53) possibly_damaging(0.576) TCGA-A6-2686-01 5 10387137 10387137 C T MARCH6 Silent p.S122S 0.20 TCGA-A6-2686-01 5 1064225 1064225 C T SLC12A7 Silent p.L860L 0.38 TCGA-A6-2686-01 5 110560165 110560165 G A CAMK4 5'UTR 0.50 TCGA-A6-2686-01 5 112154734 112154734 A G APC Silent p.L335L 0.25 TCGA-A6-2686-01 5 112177314 112177314 C T APC Missense_Mutation p.A2008V 0.15 possibly_damaging(0.73) TCGA-A6-2686-01 5 112896858 112896858 G A YTHDC2 Silent p.P766P 0.23 TCGA-A6-2686-01 5 114466385 114466385 C G TRIM36 Missense_Mutation p.R579P 0.53 tolerated(0.15) possibly_damaging(0.613) TCGA-A6-2686-01 5 114476995 114476995 A G TRIM36 Missense_Mutation p.L283S 0.64 tolerated(0.72) benign(0.017) TCGA-A6-2686-01 5 115814374 115814374 G A SEMA6A Missense_Mutation p.P431S 0.54 deleterious(0) possibly_damaging(0.655) TCGA-A6-2686-01 5 123980336 123980336 A G ZNF608 Missense_Mutation p.W1242R 0.14 deleterious(0.02) possibly_damaging(0.701) TCGA-A6-2686-01 5 123983606 123983606 C T ZNF608 Missense_Mutation p.G824E 0.25 tolerated(0.39) possibly_damaging(0.522) TCGA-A6-2686-01 5 1240677 1240677 G A SLC6A18 Missense_Mutation p.A293T 0.38 deleterious(0.04) possibly_damaging(0.477) TCGA-A6-2686-01 5 132051448 132051448 C T KIF3A Splice_Site p.X377_splice 0.57 TCGA-A6-2686-01 5 13708417 13708417 G A DNAH5 Missense_Mutation p.P4385S 0.30 possibly_damaging(0.876) TCGA-A6-2686-01 5 137219221 137219221 C T MYOT Missense_Mutation p.A322V 0.61 tolerated(0.24) benign(0.002) TCGA-A6-2686-01 5 137499790 137499791 - A BRD8 Frame_Shift_Ins p.G620Wfs*10 0.19 TCGA-A6-2686-01 5 138730639 138730639 C T PROB1 Silent p.P44P 0.56 TCGA-A6-2686-01 5 140230084 140230084 G A PCDHA9 Silent p.S668S 0.53 TCGA-A6-2686-01 5 140242274 140242274 C T AC005609.1 3'UTR 0.56 TCGA-A6-2686-01 5 140250600 140250600 G A PCDHA11 Missense_Mutation p.E638K 0.27 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-A6-2686-01 5 140255357 140255357 G A PCDHA12 Silent p.A100A 0.60 TCGA-A6-2686-01 5 140257098 140257098 C T PCDHA12 Missense_Mutation p.R681W 0.70 deleterious_low_confidence(0.03) benign(0.064) TCGA-A6-2686-01 5 140559017 140559017 G A PCDHB8 Missense_Mutation p.A468T 0.40 deleterious_low_confidence(0) benign(0.36) TCGA-A6-2686-01 5 140574024 140574024 C T PCDHB10 Silent p.R633R 0.31 TCGA-A6-2686-01 5 140596462 140596462 T - PCDHB13 3'UTR 0.37 TCGA-A6-2686-01 5 140735427 140735427 G A PCDHGA4 Silent p.P220P 0.77 TCGA-A6-2686-01 5 140764734 140764734 G - PCDHGA7 Frame_Shift_Del p.V757Sfs*12 0.31 TCGA-A6-2686-01 5 140764849 140764849 G A PCDHGA7 Missense_Mutation p.V795I 0.56 tolerated_low_confidence(0.31) benign(0.001) TCGA-A6-2686-01 5 140812414 140812414 G T PCDHGA12 Silent p.A696A 0.18 TCGA-A6-2686-01 5 141014467 141014467 C A HDAC3 Missense_Mutation p.E64D 0.42 tolerated(1) benign(0.007) TCGA-A6-2686-01 5 141336966 141336966 G A PCDH12 Nonsense_Mutation p.R151* 0.49 TCGA-A6-2686-01 5 14487781 14487781 C - TRIO Frame_Shift_Del p.V2351Cfs*62 0.31 TCGA-A6-2686-01 5 145641349 145641349 G A RBM27 Missense_Mutation p.V724M 0.61 tolerated(0.4) benign(0.005) TCGA-A6-2686-01 5 146804504 146804504 C A DPYSL3 Missense_Mutation p.G135V 0.56 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 5 149212694 149212694 G A PPARGC1B Missense_Mutation p.C353Y 0.44 tolerated(0.16) probably_damaging(0.999) TCGA-A6-2686-01 5 149314268 149314268 C T PDE6A Missense_Mutation p.C163Y 0.29 deleterious(0) possibly_damaging(0.686) TCGA-A6-2686-01 5 150407618 150407618 C T GPX3 Missense_Mutation p.T203M 0.67 deleterious(0.04) benign(0.027) TCGA-A6-2686-01 5 150867568 150867568 G A SLC36A1 Missense_Mutation p.R395H 0.36 tolerated(0.12) benign(0.219) TCGA-A6-2686-01 5 151043761 151043761 G A SPARC Missense_Mutation p.A257V 0.20 tolerated(0.14) probably_damaging(0.999) TCGA-A6-2686-01 5 151304089 151304089 G A GLRA1 Nonsense_Mutation p.R8* 0.60 TCGA-A6-2686-01 5 154200033 154200033 C A FAXDC2 Splice_Site p.X282_splice 0.73 TCGA-A6-2686-01 5 156269 156269 G - PLEKHG4B Frame_Shift_Del p.G410Afs*7 0.28 TCGA-A6-2686-01 5 156770216 156770217 - G FNDC9 Frame_Shift_Ins p.Q110Pfs*33 0.42 TCGA-A6-2686-01 5 157065528 157065528 G A SOX30 Silent p.H530H 0.38 TCGA-A6-2686-01 5 157098814 157098814 G A C5orf52 Silent p.A64A 0.32 TCGA-A6-2686-01 5 157160020 157160020 G A AC026407.1 Missense_Mutation p.L59F 0.62 unknown(0) TCGA-A6-2686-01 5 161300292 161300292 C A GABRA1 Missense_Mutation p.P142H 0.12 deleterious(0) probably_damaging(0.922) TCGA-A6-2686-01 5 168137951 168137951 T C SLIT3 Missense_Mutation p.M890V 0.21 deleterious(0.02) benign(0.019) TCGA-A6-2686-01 5 175774701 175774702 - G KIAA1191 Frame_Shift_Ins p.K274Qfs*18 0.44 TCGA-A6-2686-01 5 176721933 176721933 C T NSD1 Missense_Mutation p.P2522S 0.64 tolerated_low_confidence(0.07) benign(0.004) TCGA-A6-2686-01 5 177651678 177651678 G A PHYKPL Missense_Mutation p.R156C 0.26 deleterious(0.01) benign(0.052) TCGA-A6-2686-01 5 179079288 179079288 T C AC136604.1 Silent p.S257S 0.58 TCGA-A6-2686-01 5 180582372 180582372 C A OR2V2 Missense_Mutation p.Q144K 0.60 tolerated(0.11) benign(0.019) TCGA-A6-2686-01 5 180622091 180622091 G A TRIM7 3'UTR 0.64 TCGA-A6-2686-01 5 1816046 1816046 G A NDUFS6 3'UTR 0.35 TCGA-A6-2686-01 5 19483440 19483440 C T CDH18 Missense_Mutation p.A618T 0.35 deleterious(0.02) probably_damaging(0.99) TCGA-A6-2686-01 5 24488219 24488219 T - CDH10 Frame_Shift_Del p.E641Sfs*3 0.21 TCGA-A6-2686-01 5 26906081 26906081 A G CDH9 Silent p.P266P 0.28 TCGA-A6-2686-01 5 2749655 2749655 C T IRX2 Missense_Mutation p.A166T 0.19 deleterious(0) probably_damaging(0.985) TCGA-A6-2686-01 5 2749806 2749806 G T IRX2 Silent p.P115P 0.15 TCGA-A6-2686-01 5 31799825 31799825 G T PDZD2 Missense_Mutation p.G157V 0.21 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 5 32074610 32074610 C G PDZD2 Missense_Mutation p.A1133G 0.17 deleterious(0.03) benign(0.345) TCGA-A6-2686-01 5 32126234 32126234 A G GOLPH3 3'UTR 0.44 TCGA-A6-2686-01 5 32712498 32712498 G A NPR3 Missense_Mutation p.D206N 0.33 tolerated(0.23) probably_damaging(0.993) TCGA-A6-2686-01 5 33596039 33596039 C A ADAMTS12 Missense_Mutation p.R885M 0.47 deleterious(0) probably_damaging(0.99) TCGA-A6-2686-01 5 34687702 34687702 T - RAI14 Intron 0.29 TCGA-A6-2686-01 5 35965630 35965630 C A UGT3A1 Missense_Mutation p.R234M 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-A6-2686-01 5 36184067 36184067 T - SKP2 3'UTR 0.26 TCGA-A6-2686-01 5 37003374 37003374 C T NIPBL Silent p.D1260D 0.27 TCGA-A6-2686-01 5 38933207 38933207 C T OSMR Silent p.D867D 0.23 TCGA-A6-2686-01 5 40681551 40681551 G A PTGER4 Silent p.A152A 0.17 TCGA-A6-2686-01 5 40692023 40692023 T G PTGER4 Missense_Mutation p.L337R 0.18 deleterious(0) benign(0.387) TCGA-A6-2686-01 5 41039557 41039557 C T MROH2B Missense_Mutation p.R685Q 0.43 tolerated(0.09) benign(0.392) TCGA-A6-2686-01 5 413547 413547 A G AHRR Missense_Mutation p.Q151R 0.22 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 5 41510693 41510693 G A PLCXD3 5'UTR 0.25 TCGA-A6-2686-01 5 492111 492111 C T SLC9A3 Missense_Mutation p.G96D 0.20 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 5 52214576 52214576 C T ITGA1 Missense_Mutation p.A668V 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-A6-2686-01 5 53815021 53815022 - C SNX18 Frame_Shift_Ins p.A416Rfs*5 0.39 TCGA-A6-2686-01 5 54329722 54329722 A - GZMK Frame_Shift_Del p.S256Afs*35 0.20 TCGA-A6-2686-01 5 5436570 5436571 - A KIAA0947 Frame_Shift_Ins p.I44Nfs*6 0.17 TCGA-A6-2686-01 5 54439394 54439394 C T CDC20B Missense_Mutation p.A145T 0.17 tolerated(0.57) benign(0.018) TCGA-A6-2686-01 5 54565435 54565435 G T DHX29 Missense_Mutation p.L1034I 0.36 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 5 5461142 5461142 G A KIAA0947 Silent p.K565K 0.30 TCGA-A6-2686-01 5 55251948 55251948 A T IL6ST Missense_Mutation p.L391H 0.17 deleterious(0) probably_damaging(0.941) TCGA-A6-2686-01 5 56558696 56558696 T - GPBP1 3'UTR 0.19 TCGA-A6-2686-01 5 56777361 56777361 C T ACTBL2 3'UTR 0.58 TCGA-A6-2686-01 5 61659668 61659668 C T KIF2A Missense_Mutation p.A470V 0.57 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 5 6374471 6374471 T - MED10 Frame_Shift_Del p.N92Mfs*11 0.19 TCGA-A6-2686-01 5 69372432 69372432 T A SMN2 Intron 0.58 TCGA-A6-2686-01 5 71491428 71491429 - A MAP1B Frame_Shift_Ins p.P752Tfs*35 0.28 TCGA-A6-2686-01 5 72373262 72373262 A G FCHO2 Missense_Mutation p.R597G 0.20 deleterious(0) possibly_damaging(0.612) TCGA-A6-2686-01 5 74012446 74012446 C T HEXB Nonsense_Mutation p.Q373* 0.10 TCGA-A6-2686-01 5 74047302 74047302 G A GFM2 Silent p.D107D 0.23 TCGA-A6-2686-01 5 7727280 7727280 C T ADCY2 Missense_Mutation p.R593W 0.31 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 5 79095536 79095536 C T CMYA5 3'UTR 0.38 TCGA-A6-2686-01 5 79854148 79854148 T C ANKRD34B 3'UTR 0.60 TCGA-A6-2686-01 5 80742737 80742737 G A SSBP2 Missense_Mutation p.P243L 0.45 deleterious(0.03) probably_damaging(0.959) TCGA-A6-2686-01 5 95728549 95728549 C A PCSK1 3'UTR 0.57 TCGA-A6-2686-01 5 96503216 96503216 T C RIOK2 Missense_Mutation p.H451R 0.43 tolerated(0.16) benign(0) TCGA-A6-2686-01 6 100006215 100006215 T - CCNC Intron 0.29 TCGA-A6-2686-01 6 100010783 100010783 C T CCNC Missense_Mutation p.R25H 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-A6-2686-01 6 10557410 10557410 C - GCNT2 Intron 0.43 TCGA-A6-2686-01 6 10731012 10731012 A - TMEM14C 3'UTR 0.55 TCGA-A6-2686-01 6 108214775 108214775 T C SEC63 Missense_Mutation p.K529E 0.43 tolerated(0.15) possibly_damaging(0.837) TCGA-A6-2686-01 6 108497789 108497789 C T NR2E1 Silent p.N114N 0.33 TCGA-A6-2686-01 6 10959037 10959037 G A SYCP2L Silent p.P728P 0.21 TCGA-A6-2686-01 6 110953329 110953331 GAG - CDK19 In_Frame_Del p.P183del 0.38 TCGA-A6-2686-01 6 111540026 111540026 T - SLC16A10 Frame_Shift_Del p.F367Sfs*5 0.31 TCGA-A6-2686-01 6 112015831 112015831 C A FYN Missense_Mutation p.Q373H 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-A6-2686-01 6 114181730 114181730 C - MARCKS Frame_Shift_Del p.P327Qfs*42 0.29 TCGA-A6-2686-01 6 116861581 116861581 C T TRAPPC3L Missense_Mutation p.R62Q 0.24 deleterious(0.03) benign(0.059) TCGA-A6-2686-01 6 121768438 121768438 G - GJA1 Frame_Shift_Del p.L151Cfs*21 0.21 TCGA-A6-2686-01 6 123039023 123039023 T G PKIB Missense_Mutation p.N35K 0.44 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 6 127837038 127837038 C - SOGA3 Frame_Shift_Del p.G241Afs*133 0.44 TCGA-A6-2686-01 6 129419455 129419455 G A LAMA2 Silent p.T178T 0.43 TCGA-A6-2686-01 6 129618946 129618946 C T LAMA2 Silent p.V991V 0.30 TCGA-A6-2686-01 6 130425703 130425703 T C L3MBTL3 Silent p.S623S 0.08 TCGA-A6-2686-01 6 13206135 13206135 G - PHACTR1 Frame_Shift_Del p.P254Qfs*59 0.62 TCGA-A6-2686-01 6 132618369 132618369 G T MOXD1 Missense_Mutation p.L589M 0.41 tolerated_low_confidence(0.06) benign(0.347) TCGA-A6-2686-01 6 132643847 132643847 A G MOXD1 Missense_Mutation p.Y426H 0.28 deleterious(0.04) probably_damaging(0.985) TCGA-A6-2686-01 6 132910040 132910040 G C TAAR5 Silent p.L262L 0.16 TCGA-A6-2686-01 6 135265042 135265042 C A ALDH8A1 Missense_Mutation p.Q67H 0.42 tolerated(0.06) possibly_damaging(0.722) TCGA-A6-2686-01 6 136599695 136599695 A G BCLAF1 Silent p.G108G 0.24 TCGA-A6-2686-01 6 137243704 137243704 C T SLC35D3 Silent p.C46C 0.25 TCGA-A6-2686-01 6 138655388 138655388 G A KIAA1244 Missense_Mutation p.G1802D 0.25 tolerated(0.25) possibly_damaging(0.662) TCGA-A6-2686-01 6 139241352 139241352 C T REPS1 Missense_Mutation p.D510N 0.25 tolerated(0.11) benign(0.072) TCGA-A6-2686-01 6 139488147 139488147 G - HECA Frame_Shift_Del p.G335Dfs*27 0.47 TCGA-A6-2686-01 6 142741168 142741168 T - GPR126 Frame_Shift_Del p.F1083Lfs*9 0.27 TCGA-A6-2686-01 6 143095859 143095859 G A HIVEP2 Missense_Mutation p.T6I 0.34 tolerated(0.16) benign(0.013) TCGA-A6-2686-01 6 144765448 144765448 G A UTRN Missense_Mutation p.R515H 0.25 deleterious(0.02) benign(0.146) TCGA-A6-2686-01 6 146268772 146268772 G A SHPRH Missense_Mutation p.R357C 0.18 tolerated(0.05) probably_damaging(1) TCGA-A6-2686-01 6 147705881 147705881 A T STXBP5 Missense_Mutation p.Y1149F 0.21 deleterious(0.01) benign(0.179) TCGA-A6-2686-01 6 150174280 150174280 T C LRP11 Silent p.P210P 0.26 TCGA-A6-2686-01 6 150386588 150386588 T C ULBP3 Missense_Mutation p.K192E 0.53 tolerated(0.16) possibly_damaging(0.759) TCGA-A6-2686-01 6 151125863 151125863 G A PLEKHG1 Missense_Mutation p.A300T 0.57 deleterious(0.03) possibly_damaging(0.772) TCGA-A6-2686-01 6 151197270 151197270 A - MTHFD1L Frame_Shift_Del p.N93Tfs*18 0.21 TCGA-A6-2686-01 6 152457811 152457811 A T SYNE1 Missense_Mutation p.V8534E 0.17 probably_damaging(0.982) TCGA-A6-2686-01 6 152461297 152461297 C A SYNE1 Splice_Site p.X8416_splice 0.52 TCGA-A6-2686-01 6 152485351 152485351 C T SYNE1 Missense_Mutation p.V7913I 0.14 benign(0.039) TCGA-A6-2686-01 6 152631914 152631915 - T SYNE1 Frame_Shift_Ins p.M5602Nfs*13 0.39 TCGA-A6-2686-01 6 152702406 152702406 C T SYNE1 Missense_Mutation p.G2915E 0.32 probably_damaging(0.911) TCGA-A6-2686-01 6 152757192 152757192 G A SYNE1 Silent p.N1398N 0.24 TCGA-A6-2686-01 6 153296240 153296240 T - FBXO5 Frame_Shift_Del p.K207Rfs*9 0.16 TCGA-A6-2686-01 6 15452403 15452403 C T JARID2 Nonsense_Mutation p.R164* 0.45 TCGA-A6-2686-01 6 15496666 15496666 G A JARID2 Missense_Mutation p.V404I 0.67 tolerated_low_confidence(0.12) benign(0.033) TCGA-A6-2686-01 6 155153659 155153659 T - SCAF8 Frame_Shift_Del p.L984* 0.51 TCGA-A6-2686-01 6 155497952 155497952 C T TIAM2 Silent p.V788V 0.22 TCGA-A6-2686-01 6 155635581 155635581 T C TFB1M 5'UTR 0.21 TCGA-A6-2686-01 6 157522303 157522303 C A ARID1B Silent p.S1525S 0.22 TCGA-A6-2686-01 6 157528290 157528290 G A ARID1B Silent p.V2005V 0.50 TCGA-A6-2686-01 6 158014043 158014043 G - ZDHHC14 Frame_Shift_Del p.Y146Tfs*17 0.46 TCGA-A6-2686-01 6 158532468 158532468 T C SERAC1 Missense_Mutation p.K632R 0.13 tolerated(0.38) benign(0.004) TCGA-A6-2686-01 6 158925079 158925079 G T TULP4 Missense_Mutation p.G1462C 0.33 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-A6-2686-01 6 159046206 159046206 C T TMEM181 Missense_Mutation p.A479V 0.22 deleterious(0.02) probably_damaging(0.969) TCGA-A6-2686-01 6 160103632 160103632 C T SOD2 Missense_Mutation p.A188T 0.24 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 6 160109242 160109242 C T SOD2 Missense_Mutation p.A87T 0.15 deleterious(0) benign(0.393) TCGA-A6-2686-01 6 160169553 160169553 G T WTAP Intron 0.23 TCGA-A6-2686-01 6 160670333 160670333 C T SLC22A2 Missense_Mutation p.A253T 0.12 tolerated(0.36) benign(0.02) TCGA-A6-2686-01 6 16306993 16306993 G A ATXN1 Missense_Mutation p.P672L 0.62 deleterious(0) benign(0.435) TCGA-A6-2686-01 6 16327924 16327924 C A ATXN1 Missense_Mutation p.Q206H 0.62 tolerated_low_confidence(0.1) unknown(0) TCGA-A6-2686-01 6 16328093 16328093 G - ATXN1 Frame_Shift_Del p.P150Qfs*38 0.56 TCGA-A6-2686-01 6 163983047 163983047 C T QKI Silent p.L194L 0.48 TCGA-A6-2686-01 6 163987701 163987701 C - QKI Intron 0.21 TCGA-A6-2686-01 6 167550645 167550645 C T CCR6 Silent p.C309C 0.29 TCGA-A6-2686-01 6 168708391 168708391 G A DACT2 Silent p.S682S 0.22 TCGA-A6-2686-01 6 170116051 170116051 G A PHF10 Silent p.S181S 0.32 TCGA-A6-2686-01 6 170871037 170871037 G A TBP Silent p.Q71Q 0.44 TCGA-A6-2686-01 6 18201802 18201802 G A KDM1B Intron 0.27 TCGA-A6-2686-01 6 20483144 20483144 A T E2F3 Missense_Mutation p.N293Y 0.76 deleterious(0) probably_damaging(0.956) TCGA-A6-2686-01 6 24570135 24570135 C T KIAA0319 Missense_Mutation p.V663I 0.24 tolerated(0.98) benign(0.015) TCGA-A6-2686-01 6 24873893 24873893 C A FAM65B Missense_Mutation p.R79M 0.29 deleterious(0.02) possibly_damaging(0.819) TCGA-A6-2686-01 6 26107987 26107987 C T HIST1H1T Missense_Mutation p.S112N 0.64 tolerated(1) benign(0.046) TCGA-A6-2686-01 6 26158547 26158547 T C HIST1H2BD Silent p.H50H 0.50 TCGA-A6-2686-01 6 26158589 26158589 T C HIST1H2BD Silent p.N64N 0.37 TCGA-A6-2686-01 6 26216690 26216690 C T HIST1H2BG Missense_Mutation p.G61D 0.46 deleterious_low_confidence(0.02) benign(0.232) TCGA-A6-2686-01 6 26250649 26250651 AGT - HIST1H3F In_Frame_Del p.L62del 0.29 TCGA-A6-2686-01 6 26373620 26373620 A - BTN3A2 Frame_Shift_Del p.I317Sfs*4 0.38 TCGA-A6-2686-01 6 28265762 28265762 C A PGBD1 Missense_Mutation p.P288H 0.63 tolerated_low_confidence(0.11) benign(0.436) TCGA-A6-2686-01 6 28483449 28483450 - T GPX6 Frame_Shift_Ins p.P25Afs*4 0.32 TCGA-A6-2686-01 6 28876752 28876752 G A TRIM27 Missense_Mutation p.T295I 0.30 tolerated(0.52) benign(0) TCGA-A6-2686-01 6 2900751 2900751 G T SERPINB9 Missense_Mutation p.P32H 0.15 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 6 29364657 29364657 C A OR12D2 Missense_Mutation p.L61M 0.23 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 6 29524112 29524112 C T UBD Missense_Mutation p.E15K 0.80 tolerated(0.25) benign(0.029) TCGA-A6-2686-01 6 29691955 29691956 CA - HLA-F Frame_Shift_Del p.T115Pfs*54 0.59 TCGA-A6-2686-01 6 30622627 30622627 C T DHX16 Silent p.T951T 0.35 TCGA-A6-2686-01 6 30623290 30623290 G A DHX16 Silent p.V861V 0.62 TCGA-A6-2686-01 6 30691775 30691775 C T TUBB Silent p.T312T 0.29 TCGA-A6-2686-01 6 31322882 31322882 A G HLA-B Splice_Site p.X338_splice 0.46 TCGA-A6-2686-01 6 31496835 31496835 G A MCCD1 Missense_Mutation p.R15H 0.63 tolerated(0.58) benign(0) TCGA-A6-2686-01 6 31656057 31656057 G A ABHD16A Missense_Mutation p.R426W 0.18 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 6 31680229 31680229 G A LY6G6E Silent p.C89C 0.67 TCGA-A6-2686-01 6 31695348 31695348 C A DDAH2 Missense_Mutation p.G238V 0.54 tolerated(0.08) benign(0.33) TCGA-A6-2686-01 6 31741165 31741165 C T VWA7 Silent p.P257P 0.24 TCGA-A6-2686-01 6 31868767 31868767 C T ZBTB12 Missense_Mutation p.A106T 0.67 deleterious(0) possibly_damaging(0.787) TCGA-A6-2686-01 6 31869089 31869089 G A ZBTB12 5'UTR 0.23 TCGA-A6-2686-01 6 32010093 32010093 C T TNXB Nonsense_Mutation p.W515* 0.16 TCGA-A6-2686-01 6 32023815 32023815 C A TNXB Missense_Mutation p.Q2760H 0.55 possibly_damaging(0.904) TCGA-A6-2686-01 6 32370861 32370861 G A BTNL2 Missense_Mutation p.A187V 0.62 deleterious(0) benign(0.403) TCGA-A6-2686-01 6 32975279 32975279 G - HLA-DOA Frame_Shift_Del p.P141Lfs*2 0.41 TCGA-A6-2686-01 6 33632652 33632652 C T ITPR3 Missense_Mutation p.S385L 0.25 deleterious(0) possibly_damaging(0.618) TCGA-A6-2686-01 6 35108568 35108568 C A TCP11 Missense_Mutation p.G40V 0.78 tolerated(0.07) benign(0.019) TCGA-A6-2686-01 6 35806115 35806115 T - SRPK1 Frame_Shift_Del p.G595Vfs*3 0.58 TCGA-A6-2686-01 6 3850114 3850114 G A FAM50B Silent p.R23R 0.57 TCGA-A6-2686-01 6 38654727 38654727 C T GLO1 Missense_Mutation p.M36I 0.52 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 6 39864619 39864619 C G DAAM2 Silent p.R791R 0.40 TCGA-A6-2686-01 6 41303604 41303604 A - NCR2 5'UTR 0.27 TCGA-A6-2686-01 6 42019155 42019155 A G TAF8 Missense_Mutation p.T36A 0.62 tolerated(0.74) benign(0.043) TCGA-A6-2686-01 6 42203997 42203997 C A TRERF1 Missense_Mutation p.Q1004H 0.15 deleterious(0.04) benign(0.216) TCGA-A6-2686-01 6 43420788 43420788 G A DLK2 Nonsense_Mutation p.Q76* 0.30 TCGA-A6-2686-01 6 43472680 43472680 G A TJAP1 Missense_Mutation p.R254H 0.63 tolerated(0.21) benign(0.002) TCGA-A6-2686-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.26 TCGA-A6-2686-01 6 45390445 45390445 A G RUNX2 Silent p.Q58Q 0.55 TCGA-A6-2686-01 6 46684226 46684226 C T PLA2G7 Missense_Mutation p.D91N 0.67 tolerated(0.13) benign(0.005) TCGA-A6-2686-01 6 46824464 46824464 C A GPR116 Missense_Mutation p.Q1289H 0.08 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 6 47680331 47680331 G A GPR115 Missense_Mutation p.R180Q 0.09 tolerated(0.38) benign(0.004) TCGA-A6-2686-01 6 51732759 51732759 G T PKHD1 Silent p.T2545T 0.16 TCGA-A6-2686-01 6 52288904 52288904 G A EFHC1 Missense_Mutation p.G75D 0.23 deleterious(0.04) benign(0.259) TCGA-A6-2686-01 6 54804838 54804838 G A FAM83B Missense_Mutation p.G357R 0.39 tolerated(0.24) benign(0.004) TCGA-A6-2686-01 6 55739287 55739287 C T BMP5 Missense_Mutation p.R126H 0.44 tolerated(0.06) benign(0.005) TCGA-A6-2686-01 6 56371489 56371489 G T DST Silent p.P3823P 0.39 TCGA-A6-2686-01 6 56480384 56480384 T G DST Intron 0.27 TCGA-A6-2686-01 6 56917909 56917909 A - KIAA1586 Frame_Shift_Del p.I207Lfs*17 0.26 TCGA-A6-2686-01 6 57015515 57015515 A G ZNF451 Splice_Site p.X870_splice 0.15 TCGA-A6-2686-01 6 5999379 5999379 C - NRN1 Frame_Shift_Del p.A87Rfs*8 0.31 TCGA-A6-2686-01 6 62390901 62390901 C T KHDRBS2 Silent p.G339G 0.21 TCGA-A6-2686-01 6 69646486 69646486 C T BAI3 Missense_Mutation p.T315I 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-A6-2686-01 6 70064135 70064135 C T BAI3 Missense_Mutation p.A1157V 0.47 tolerated(0.38) benign(0.047) TCGA-A6-2686-01 6 71546674 71546674 A - SMAP1 Frame_Shift_Del p.S205Vfs*15 0.22 TCGA-A6-2686-01 6 73332245 73332245 C T KCNQ5 Missense_Mutation p.R110W 0.33 deleterious(0) probably_damaging(0.945) TCGA-A6-2686-01 6 73902392 73902392 G A KCNQ5 Missense_Mutation p.R624Q 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-A6-2686-01 6 7727544 7727544 T A BMP6 Missense_Mutation p.L119Q 0.50 tolerated(0.68) benign(0) TCGA-A6-2686-01 6 79918277 79918277 G A HMGN3 Missense_Mutation p.A28V 0.38 deleterious(0.03) benign(0.036) TCGA-A6-2686-01 6 8041495 8041495 G A BLOC1S5 Missense_Mutation p.R68C 0.69 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 6 83728834 83728834 T C UBE3D Missense_Mutation p.S290G 0.17 deleterious(0) possibly_damaging(0.593) TCGA-A6-2686-01 6 84885021 84885021 T C KIAA1009 Missense_Mutation p.K570R 0.23 tolerated(0.2) benign(0.034) TCGA-A6-2686-01 6 84896274 84896274 T C KIAA1009 Missense_Mutation p.N393D 0.41 deleterious(0.04) benign(0.031) TCGA-A6-2686-01 6 84913715 84913716 - T KIAA1009 Frame_Shift_Ins p.I224Nfs*16 0.32 TCGA-A6-2686-01 6 86275080 86275080 A - SNX14 Frame_Shift_Del p.F173Lfs*5 0.31 TCGA-A6-2686-01 6 90305692 90305692 A G ANKRD6 Missense_Mutation p.I60V 0.11 tolerated(0.16) benign(0.012) TCGA-A6-2686-01 6 93955104 93955104 G A EPHA7 Silent p.L932L 0.32 TCGA-A6-2686-01 6 97676807 97676807 C G MMS22L Missense_Mutation p.V668L 0.31 tolerated(0.05) benign(0.041) TCGA-A6-2686-01 6 99848922 99848922 C A PNISR Missense_Mutation p.D638Y 0.26 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-A6-2686-01 7 100091338 100091338 C T NYAP1 Silent p.L780L 0.46 TCGA-A6-2686-01 7 100204202 100204202 C - PCOLCE Frame_Shift_Del p.K299Sfs*41 0.29 TCGA-A6-2686-01 7 100451898 100451898 G - SLC12A9 Frame_Shift_Del p.G28Vfs*27 0.20 TCGA-A6-2686-01 7 100465833 100465833 C T TRIP6 Missense_Mutation p.A114V 0.44 tolerated(0.14) benign(0.003) TCGA-A6-2686-01 7 101844836 101844836 C T CUX1 Silent p.T764T 0.12 TCGA-A6-2686-01 7 101944048 101944048 G A SH2B2 Missense_Mutation p.V115I 0.41 tolerated(0.57) benign(0.077) TCGA-A6-2686-01 7 102105605 102105605 G A LRWD1 Silent p.L26L 0.33 TCGA-A6-2686-01 7 102109437 102109437 G - LRWD1 Frame_Shift_Del p.V387Sfs*120 0.34 TCGA-A6-2686-01 7 103805717 103805718 - T ORC5 Frame_Shift_Ins p.I335Nfs*34 0.24 TCGA-A6-2686-01 7 105148864 105148864 T - PUS7 Frame_Shift_Del p.K32Nfs*9 0.36 TCGA-A6-2686-01 7 106799959 106799959 G A PRKAR2B Missense_Mutation p.A397T 0.45 tolerated(0.72) benign(0.003) TCGA-A6-2686-01 7 106841940 106841942 AAG - HBP1 3'UTR 0.30 TCGA-A6-2686-01 7 107415260 107415260 G A SLC26A3 Nonsense_Mutation p.R579* 0.44 TCGA-A6-2686-01 7 107626733 107626733 C T LAMB1 Missense_Mutation p.A167T 0.12 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 7 107820702 107820702 G A NRCAM Missense_Mutation p.A939V 0.40 tolerated(0.1) possibly_damaging(0.764) TCGA-A6-2686-01 7 111379280 111379280 G A DOCK4 Silent p.D1705D 0.11 TCGA-A6-2686-01 7 114299703 114299703 T A FOXP2 Missense_Mutation p.F566Y 0.39 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 7 117864734 117864734 C T ANKRD7 5'UTR 0.25 TCGA-A6-2686-01 7 121652348 121652348 C T PTPRZ1 Missense_Mutation p.A1083V 0.08 tolerated_low_confidence(0.27) benign(0.002) TCGA-A6-2686-01 7 122111586 122111587 AC - CADPS2 Frame_Shift_Del p.L677Rfs*2 0.21 TCGA-A6-2686-01 7 126079030 126079030 G A GRM8 3'UTR 0.52 TCGA-A6-2686-01 7 126249491 126249491 G T GRM8 Silent p.I473I 0.42 TCGA-A6-2686-01 7 12666398 12666398 G T SCIN Missense_Mutation p.V391L 0.15 deleterious(0.02) benign(0.011) TCGA-A6-2686-01 7 128413713 128413713 A G OPN1SW Missense_Mutation p.M306T 0.38 deleterious(0) probably_damaging(0.992) TCGA-A6-2686-01 7 128530536 128530536 G A KCP RNA 0.52 TCGA-A6-2686-01 7 129664232 129664232 G T ZC3HC1 Silent p.S297S 0.23 TCGA-A6-2686-01 7 129987675 129987675 T C CPA5 Missense_Mutation p.L62P 0.14 tolerated(0.22) possibly_damaging(0.651) TCGA-A6-2686-01 7 130353923 130353923 G T TSGA13 Silent p.P253P 0.16 TCGA-A6-2686-01 7 130364109 130364109 C T TSGA13 Missense_Mutation p.D91N 0.28 tolerated(0.15) possibly_damaging(0.728) TCGA-A6-2686-01 7 133041278 133041278 G A EXOC4 Missense_Mutation p.D320N 0.15 tolerated(0.11) probably_damaging(0.94) TCGA-A6-2686-01 7 133160209 133160210 - A EXOC4 Frame_Shift_Ins p.N439Kfs*28 0.18 TCGA-A6-2686-01 7 134850010 134850010 A G TMEM140 3'UTR 0.10 TCGA-A6-2686-01 7 135292055 135292055 C T NUP205 Missense_Mutation p.T1044M 0.14 tolerated(0.05) possibly_damaging(0.817) TCGA-A6-2686-01 7 138978112 138978112 G A UBN2 Silent p.Q1268Q 0.18 TCGA-A6-2686-01 7 139257747 139257747 C T HIPK2 Missense_Mutation p.A1175T 0.13 deleterious(0.03) possibly_damaging(0.475) TCGA-A6-2686-01 7 140373485 140373485 C A ADCK2 Missense_Mutation p.L119I 0.13 tolerated(0.1) benign(0.334) TCGA-A6-2686-01 7 140374018 140374018 T C ADCK2 Silent p.P296P 0.33 TCGA-A6-2686-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-A6-2686-01 7 141736032 141736032 C T MGAM Nonsense_Mutation p.Q675* 0.46 TCGA-A6-2686-01 7 141739949 141739949 C T MGAM Missense_Mutation p.A784V 0.13 deleterious(0) possibly_damaging(0.797) TCGA-A6-2686-01 7 142562235 142562235 G T EPHB6 Missense_Mutation p.R226M 0.14 deleterious(0) possibly_damaging(0.696) TCGA-A6-2686-01 7 142568117 142568117 C T EPHB6 Missense_Mutation p.R920C 0.16 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 7 142609756 142609756 G A TRPV5 Silent p.F560F 0.34 TCGA-A6-2686-01 7 142612494 142612494 C - TRPV5 Frame_Shift_Del p.P424Hfs*15 0.20 TCGA-A6-2686-01 7 142962277 142962277 C A GSTK1 Missense_Mutation p.P159Q 0.28 tolerated_low_confidence(0.07) benign(0) TCGA-A6-2686-01 7 142985491 142985491 C - CASP2 5'UTR 0.44 TCGA-A6-2686-01 7 143792985 143792985 A C OR2A12 Missense_Mutation p.K262T 0.30 tolerated(0.06) benign(0.367) TCGA-A6-2686-01 7 144098295 144098295 G A NOBOX Missense_Mutation p.H230Y 0.09 tolerated(0.16) benign(0.017) TCGA-A6-2686-01 7 148543649 148543649 C T EZH2 Silent p.T53T 0.16 TCGA-A6-2686-01 7 148907724 148907724 C T ZNF282 Missense_Mutation p.R294C 0.10 tolerated(0.09) benign(0.425) TCGA-A6-2686-01 7 148936808 148936808 G A ZNF212 5'UTR 0.09 TCGA-A6-2686-01 7 148947624 148947624 G - ZNF212 Frame_Shift_Del p.E135Rfs*35 0.44 TCGA-A6-2686-01 7 149148093 149148093 C A ZNF777 Missense_Mutation p.A362S 0.33 tolerated(0.08) benign(0.017) TCGA-A6-2686-01 7 149463070 149463070 G A ZNF467 Missense_Mutation p.T174M 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-A6-2686-01 7 149463089 149463089 G A ZNF467 Missense_Mutation p.R168C 0.36 tolerated(0.11) probably_damaging(0.999) TCGA-A6-2686-01 7 149500144 149500144 C T SSPO RNA 0.21 TCGA-A6-2686-01 7 149500328 149500328 C A SSPO RNA 0.21 TCGA-A6-2686-01 7 149508018 149508018 C T SSPO RNA 0.19 TCGA-A6-2686-01 7 149511600 149511600 C T SSPO RNA 0.22 TCGA-A6-2686-01 7 150094899 150094899 C T ZNF775 Missense_Mutation p.R444C 0.35 deleterious(0) possibly_damaging(0.791) TCGA-A6-2686-01 7 150164346 150164346 G A GIMAP8 Missense_Mutation p.R187H 0.36 tolerated(0.28) benign(0.004) TCGA-A6-2686-01 7 150417617 150417617 C T GIMAP1 Silent p.R175R 0.41 TCGA-A6-2686-01 7 150554121 150554121 C - AOC1 Frame_Shift_Del p.R190Gfs*18 0.29 TCGA-A6-2686-01 7 150554886 150554886 C T AOC1 Missense_Mutation p.A443V 0.58 deleterious(0.01) possibly_damaging(0.766) TCGA-A6-2686-01 7 150748964 150748964 G A ASIC3 Missense_Mutation p.A428T 0.52 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 7 150751009 150751009 C T CDK5 3'UTR 0.30 TCGA-A6-2686-01 7 150773772 150773772 C - FASTK 3'UTR 0.34 TCGA-A6-2686-01 7 150825687 150825687 C T AGAP3 Silent p.S414S 0.18 TCGA-A6-2686-01 7 150839324 150839324 C T AGAP3 Silent p.I678I 0.22 TCGA-A6-2686-01 7 1516258 1516258 G A INTS1 Missense_Mutation p.A1700V 0.44 tolerated(0.09) probably_damaging(0.998) TCGA-A6-2686-01 7 151664478 151664478 A - GALNTL5 Frame_Shift_Del p.V52Cfs*17 0.10 TCGA-A6-2686-01 7 151805222 151805222 G A GALNT11 Missense_Mutation p.C271Y 0.14 deleterious(0) probably_damaging(0.982) TCGA-A6-2686-01 7 151845390 151845390 C T KMT2C Missense_Mutation p.R4541Q 0.11 probably_damaging(0.997) TCGA-A6-2686-01 7 152007062 152007062 C A KMT2C Missense_Mutation p.G280W 0.40 probably_damaging(1) TCGA-A6-2686-01 7 1522250 1522250 G A INTS1 Missense_Mutation p.A1212V 0.51 deleterious(0) benign(0.108) TCGA-A6-2686-01 7 154747332 154747332 G A PAXIP1 Silent p.D853D 0.17 TCGA-A6-2686-01 7 154759554 154759554 T A PAXIP1 Missense_Mutation p.D622V 0.41 deleterious(0) unknown(0) TCGA-A6-2686-01 7 155538015 155538015 A G RBM33 Missense_Mutation p.M900V 0.14 tolerated(0.38) unknown(0) TCGA-A6-2686-01 7 156798294 156798294 C T MNX1 Missense_Mutation p.V376I 0.46 tolerated_low_confidence(0.45) benign(0.142) TCGA-A6-2686-01 7 157926598 157926598 C A PTPRN2 Nonsense_Mutation p.G443* 0.18 TCGA-A6-2686-01 7 17833858 17833858 A - SNX13 Frame_Shift_Del p.F895Lfs*9 0.19 TCGA-A6-2686-01 7 1786951 1786951 C G ELFN1 3'UTR 0.41 TCGA-A6-2686-01 7 19765378 19765378 G T TMEM196 Nonsense_Mutation p.S73* 0.26 TCGA-A6-2686-01 7 20371449 20371450 - T ITGB8 Frame_Shift_Ins p.T10Yfs*34 0.40 TCGA-A6-2686-01 7 20421389 20421389 C T ITGB8 Silent p.L281L 0.26 TCGA-A6-2686-01 7 20706532 20706532 T - ABCB5 Intron 0.35 TCGA-A6-2686-01 7 21646140 21646140 A - DNAH11 Frame_Shift_Del p.K1250Nfs*43 0.42 TCGA-A6-2686-01 7 21778341 21778342 - A DNAH11 Frame_Shift_Ins p.A2566Sfs*4 0.27 TCGA-A6-2686-01 7 21840818 21840818 C T DNAH11 Missense_Mutation p.R3371W 0.45 possibly_damaging(0.828) TCGA-A6-2686-01 7 2311502 2311502 G T SNX8 Missense_Mutation p.L175M 0.39 deleterious(0.01) probably_damaging(1) TCGA-A6-2686-01 7 23750086 23750086 G A STK31 Intron 0.50 TCGA-A6-2686-01 7 23830549 23830549 G A STK31 Missense_Mutation p.G915D 0.35 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 7 27147495 27147495 G - HOXA3 3'UTR 0.38 TCGA-A6-2686-01 7 29923674 29923674 G A WIPF3 Silent p.P188P 0.32 TCGA-A6-2686-01 7 37136221 37136221 T C ELMO1 Intron 0.38 TCGA-A6-2686-01 7 4009042 4009042 C T SDK1 Missense_Mutation p.T567M 0.30 tolerated(0.24) benign(0.028) TCGA-A6-2686-01 7 41739803 41739803 G A INHBA Missense_Mutation p.A57V 0.33 tolerated(0.08) benign(0.219) TCGA-A6-2686-01 7 4188891 4188891 C A SDK1 Intron 0.32 TCGA-A6-2686-01 7 43508699 43508699 G T HECW1 Nonsense_Mutation p.G1032* 0.32 TCGA-A6-2686-01 7 44058702 44058702 G - POLR2J4 RNA 0.29 TCGA-A6-2686-01 7 44155844 44155844 C A POLD2 Missense_Mutation p.G297C 0.18 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 7 44621407 44621407 T C TMED4 Missense_Mutation p.Q59R 0.15 deleterious(0.01) possibly_damaging(0.487) TCGA-A6-2686-01 7 44734129 44734129 C T OGDH Missense_Mutation p.A541V 0.33 tolerated(0.33) benign(0.075) TCGA-A6-2686-01 7 44741156 44741156 C A OGDH Silent p.T858T 0.28 TCGA-A6-2686-01 7 44797117 44797117 C T ZMIZ2 Missense_Mutation p.A170V 0.22 deleterious(0) benign(0.24) TCGA-A6-2686-01 7 47882666 47882666 T - PKD1L1 Frame_Shift_Del p.K1780Rfs*33 0.20 TCGA-A6-2686-01 7 48260897 48260897 T - ABCA13 Frame_Shift_Del p.F155Lfs*11 0.25 TCGA-A6-2686-01 7 50660756 50660756 C T GRB10 Missense_Mutation p.G560R 0.42 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 7 53103741 53103741 G A POM121L12 Missense_Mutation p.R126H 0.41 tolerated(0.12) probably_damaging(0.923) TCGA-A6-2686-01 7 5353004 5353004 G - TNRC18 Frame_Shift_Del p.A2507Rfs*294 0.45 TCGA-A6-2686-01 7 5413787 5413787 G A TNRC18 Missense_Mutation p.P1043L 0.36 probably_damaging(0.999) TCGA-A6-2686-01 7 55468984 55468984 A G LANCL2 Missense_Mutation p.M266V 0.19 tolerated(0.07) benign(0.003) TCGA-A6-2686-01 7 57188792 57188792 T C ZNF479 Silent p.V110V 0.30 TCGA-A6-2686-01 7 57529434 57529434 C A ZNF716 Missense_Mutation p.L423I 0.30 deleterious(0.01) possibly_damaging(0.532) TCGA-A6-2686-01 7 5959545 5959545 G T CCZ1 Missense_Mutation p.V352L 0.10 tolerated(0.33) benign(0.003) TCGA-A6-2686-01 7 5966172 5966172 T C RSPH10B Missense_Mutation p.I814V 0.14 tolerated(0.29) benign(0) TCGA-A6-2686-01 7 6004150 6004150 C T RSPH10B Missense_Mutation p.D128N 0.19 deleterious(0) probably_damaging(0.983) TCGA-A6-2686-01 7 6022454 6022454 C T PMS2 Splice_Site p.X725_splice 0.19 TCGA-A6-2686-01 7 6043626 6043626 T A PMS2 Missense_Mutation p.E76V 0.15 tolerated(0.05) probably_damaging(0.964) TCGA-A6-2686-01 7 62752407 62752407 A G ZNF733P RNA 0.18 TCGA-A6-2686-01 7 66453315 66453315 C T SBDS 3'UTR 0.30 TCGA-A6-2686-01 7 6781484 6781484 G A PMS2CL Splice_Site 0.20 TCGA-A6-2686-01 7 69064825 69064825 C T AUTS2 Silent p.P62P 0.15 TCGA-A6-2686-01 7 69064869 69064869 G A AUTS2 Missense_Mutation p.R77Q 0.29 deleterious(0) probably_damaging(0.947) TCGA-A6-2686-01 7 70229871 70229871 C - AUTS2 Frame_Shift_Del p.A452Hfs*21 0.48 TCGA-A6-2686-01 7 70597921 70597921 C T WBSCR17 Missense_Mutation p.R45C 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.63) TCGA-A6-2686-01 7 72721705 72721705 C - NSUN5 Frame_Shift_Del p.G89Afs*27 0.30 TCGA-A6-2686-01 7 73279487 73279487 T C WBSCR28 Silent p.A79A 0.55 TCGA-A6-2686-01 7 73483177 73483177 C T ELN 3'UTR 0.30 TCGA-A6-2686-01 7 74009348 74009348 G A GTF2IRD1 Missense_Mutation p.A899T 0.38 tolerated(0.08) benign(0.004) TCGA-A6-2686-01 7 75045452 75045452 G T POM121C 3'Flank 0.48 TCGA-A6-2686-01 7 75051545 75051545 C T POM121C Missense_Mutation p.A664T 0.26 tolerated(0.27) benign(0.017) TCGA-A6-2686-01 7 75221387 75221387 A G HIP1 Missense_Mutation p.M124T 0.33 tolerated(0.22) probably_damaging(0.926) TCGA-A6-2686-01 7 75959426 75959426 G T YWHAG Missense_Mutation p.S71Y 0.35 deleterious_low_confidence(0) benign(0.32) TCGA-A6-2686-01 7 76109836 76109836 G T DTX2 Missense_Mutation p.A4S 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.593) TCGA-A6-2686-01 7 76144472 76144472 C T UPK3B Silent p.A289A 0.37 TCGA-A6-2686-01 7 77408516 77408516 A T RSBN1L 3'UTR 0.34 TCGA-A6-2686-01 7 77584361 77584361 T - PHTF2 3'UTR 0.56 TCGA-A6-2686-01 7 77885555 77885555 C T MAGI2 Silent p.P584P 0.39 TCGA-A6-2686-01 7 80374280 80374280 T C SEMA3C Missense_Mutation p.Y729C 0.10 tolerated(0.18) possibly_damaging(0.701) TCGA-A6-2686-01 7 82435036 82435036 T C PCLO Silent p.A4967A 0.30 TCGA-A6-2686-01 7 82585720 82585720 T C PCLO Missense_Mutation p.S1517G 0.15 unknown(0) TCGA-A6-2686-01 7 86556206 86556206 C T KIAA1324L Silent p.E372E 0.23 TCGA-A6-2686-01 7 87011742 87011742 A G CROT Missense_Mutation p.Q423R 0.51 deleterious(0) possibly_damaging(0.493) TCGA-A6-2686-01 7 87053264 87053264 C - ABCB4 Frame_Shift_Del p.L724Ffs*13 0.14 TCGA-A6-2686-01 7 8790740 8790740 T G NXPH1 Missense_Mutation p.L53V 0.48 tolerated(0.46) benign(0.001) TCGA-A6-2686-01 7 89791258 89791258 G A STEAP1 Missense_Mutation p.E210K 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-A6-2686-01 7 91502999 91502999 C T MTERF Missense_Mutation p.G370D 0.15 tolerated(0.09) possibly_damaging(0.649) TCGA-A6-2686-01 7 91503683 91503683 C T MTERF Missense_Mutation p.R142Q 0.49 tolerated(0.4) probably_damaging(1) TCGA-A6-2686-01 7 91631352 91631352 G T AKAP9 Missense_Mutation p.Q707H 0.16 possibly_damaging(0.864) TCGA-A6-2686-01 7 91726576 91726576 C T AKAP9 Nonsense_Mutation p.R3435* 0.08 TCGA-A6-2686-01 7 91763722 91763722 T C CYP51A1 5'UTR 0.08 TCGA-A6-2686-01 7 92025719 92025719 G A ANKIB1 Missense_Mutation p.R775H 0.30 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-A6-2686-01 7 92219696 92219696 C - FAM133B 5'UTR 0.42 TCGA-A6-2686-01 7 92730673 92730673 C A SAMD9 Missense_Mutation p.G1580C 0.45 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 7 92731863 92731863 G A SAMD9 Missense_Mutation p.P1183L 0.11 tolerated(0.1) benign(0) TCGA-A6-2686-01 7 94228164 94228164 A C SGCE Silent p.P392P 0.22 TCGA-A6-2686-01 7 94293215 94293215 T C PEG10 Missense_Mutation p.V116A 0.56 tolerated(0.18) benign(0.05) TCGA-A6-2686-01 7 95001652 95001652 T - PON3 Splice_Site p.X68_splice 0.16 TCGA-A6-2686-01 7 95157342 95157342 C T ASB4 Silent p.C235C 0.09 TCGA-A6-2686-01 7 97922104 97922104 C T BRI3 3'Flank 0.41 TCGA-A6-2686-01 7 98546232 98546232 G A TRRAP Missense_Mutation p.R1564Q 0.52 probably_damaging(0.975) TCGA-A6-2686-01 7 99055926 99055926 G - ATP5J2 3'UTR 0.53 TCGA-A6-2686-01 7 99227157 99227158 - T ZSCAN25 Frame_Shift_Ins p.T385Yfs*269 0.21 TCGA-A6-2686-01 7 99693398 99693398 G A MCM7 Missense_Mutation p.R532W 0.41 deleterious(0) probably_damaging(0.998) TCGA-A6-2686-01 7 99693542 99693542 T C MCM7 Missense_Mutation p.I484V 0.10 tolerated(0.18) benign(0.246) TCGA-A6-2686-01 7 99696248 99696248 G A MCM7 Missense_Mutation p.R225W 0.62 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 7 99704100 99704100 G A AP4M1 Missense_Mutation p.R367Q 0.49 deleterious(0.01) probably_damaging(0.977) TCGA-A6-2686-01 7 99711512 99711512 G T TAF6 Silent p.A111A 0.38 TCGA-A6-2686-01 7 99755286 99755286 G A C7orf43 Missense_Mutation p.R203W 0.41 deleterious(0) possibly_damaging(0.632) TCGA-A6-2686-01 7 99787212 99787212 G A STAG3 Missense_Mutation p.R287H 0.25 deleterious(0.02) possibly_damaging(0.731) TCGA-A6-2686-01 7 99998691 99998691 C T ZCWPW1 Silent p.L631L 0.40 TCGA-A6-2686-01 8 100050769 100050769 T - VPS13B Frame_Shift_Del p.L90* 0.19 TCGA-A6-2686-01 8 100883683 100883683 C T VPS13B Missense_Mutation p.L3860F 0.18 tolerated(0.1) possibly_damaging(0.587) TCGA-A6-2686-01 8 101271044 101271044 G A RNF19A Missense_Mutation p.R753C 0.36 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-A6-2686-01 8 101541840 101541841 TG - ANKRD46 Frame_Shift_Del p.T74Rfs*28 0.35 TCGA-A6-2686-01 8 103662318 103662318 G A KLF10 3'UTR 0.47 TCGA-A6-2686-01 8 104394855 104394855 T - CTHRC1 3'UTR 0.12 TCGA-A6-2686-01 8 105261812 105261812 G A RIMS2 Silent p.L1229L 0.48 TCGA-A6-2686-01 8 105393417 105393417 G T DPYS 3'UTR 0.24 TCGA-A6-2686-01 8 106814430 106814430 A T ZFPM2 Missense_Mutation p.Q707L 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-A6-2686-01 8 109465362 109465362 T C EMC2 Silent p.F97F 0.30 TCGA-A6-2686-01 8 110587164 110587164 G A SYBU Missense_Mutation p.R655C 0.33 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 8 113563042 113563042 A G CSMD3 Silent p.G1474G 0.50 TCGA-A6-2686-01 8 116426596 116426596 C A TRPS1 Silent p.A1180A 0.21 TCGA-A6-2686-01 8 11706642 11706642 C A CTSB Missense_Mutation p.R120L 0.27 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 8 119122493 119122493 C T EXT1 Missense_Mutation p.V265I 0.23 tolerated(0.1) possibly_damaging(0.78) TCGA-A6-2686-01 8 121706030 121706031 - G SNTB1 Frame_Shift_Ins p.S231Vfs*31 0.23 TCGA-A6-2686-01 8 123965146 123965146 G A ZHX2 Missense_Mutation p.D466N 0.22 deleterious(0.03) benign(0.061) TCGA-A6-2686-01 8 126011824 126011824 G A SQLE Missense_Mutation p.G60D 0.25 tolerated_low_confidence(0.56) benign(0.021) TCGA-A6-2686-01 8 12883844 12883844 C T KIAA1456 3'UTR 0.16 TCGA-A6-2686-01 8 133492496 133492496 C T KCNQ3 Missense_Mutation p.R95H 0.52 tolerated(0.1) possibly_damaging(0.469) TCGA-A6-2686-01 8 133961019 133961019 A G TG Splice_Site p.X1745_splice 0.17 TCGA-A6-2686-01 8 142202739 142202739 T G DENND3 Missense_Mutation p.C1125G 0.26 deleterious(0.02) possibly_damaging(0.609) TCGA-A6-2686-01 8 143694612 143694612 G - ARC Frame_Shift_Del p.L341Cfs*83 0.46 TCGA-A6-2686-01 8 143784455 143784455 T C LY6K Intron 0.24 TCGA-A6-2686-01 8 144522463 144522463 C T ZC3H3 Missense_Mutation p.A855T 0.68 tolerated(0.39) benign(0.007) TCGA-A6-2686-01 8 144944058 144944058 G T EPPK1 Missense_Mutation p.L1122I 0.15 benign(0.002) TCGA-A6-2686-01 8 144993863 144993863 G A PLEC Missense_Mutation p.R3513C 0.42 probably_damaging(0.993) TCGA-A6-2686-01 8 145006978 145006978 G A PLEC Missense_Mutation p.R711W 0.18 unknown(0) TCGA-A6-2686-01 8 145059276 145059276 G A PARP10 Silent p.G298G 0.16 TCGA-A6-2686-01 8 145059664 145059664 G A PARP10 Missense_Mutation p.R197C 0.17 deleterious(0) benign(0.217) TCGA-A6-2686-01 8 145512979 145512979 G - BOP1 Frame_Shift_Del p.L36Sfs*154 0.46 TCGA-A6-2686-01 8 145608428 145608428 G A ADCK5 Missense_Mutation p.G88D 0.57 tolerated(0.21) benign(0.067) TCGA-A6-2686-01 8 145640612 145640612 G A SLC39A4 Silent p.A222A 0.36 TCGA-A6-2686-01 8 145694144 145694144 G A KIFC2 Missense_Mutation p.C347Y 0.39 tolerated(0.66) probably_damaging(0.998) TCGA-A6-2686-01 8 145697850 145697850 C A KIFC2 Missense_Mutation p.L572M 0.40 deleterious(0.05) probably_damaging(0.914) TCGA-A6-2686-01 8 145731304 145731304 G A GPT Silent p.A271A 0.43 TCGA-A6-2686-01 8 146054913 146054913 G A ZNF7 Nonsense_Mutation p.W18* 0.44 TCGA-A6-2686-01 8 17067915 17067915 C T ZDHHC2 Silent p.S292S 0.23 TCGA-A6-2686-01 8 17611630 17611630 C T MTUS1 Missense_Mutation p.A563T 0.23 tolerated(0.17) benign(0.068) TCGA-A6-2686-01 8 17883056 17883056 G T PCM1 Missense_Mutation p.D1980Y 0.26 deleterious(0.02) benign(0.019) TCGA-A6-2686-01 8 17921967 17921967 T - ASAH1 Frame_Shift_Del p.G169Vfs*3 0.30 TCGA-A6-2686-01 8 18080772 18080773 - A NAT1 3'UTR 0.42 TCGA-A6-2686-01 8 1842674 1842674 C T ARHGEF10 Missense_Mutation p.A459V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-A6-2686-01 8 1842688 1842688 G A ARHGEF10 Missense_Mutation p.V464I 0.15 tolerated(0.06) probably_damaging(0.997) TCGA-A6-2686-01 8 21903713 21903713 A G FGF17 Missense_Mutation p.E54G 0.33 deleterious(0.01) benign(0.247) TCGA-A6-2686-01 8 21986342 21986342 C T HR Silent p.A114A 0.19 TCGA-A6-2686-01 8 22273631 22273631 C T SLC39A14 Missense_Mutation p.R329C 0.23 deleterious(0.01) possibly_damaging(0.849) TCGA-A6-2686-01 8 22332569 22332569 G A PPP3CC Missense_Mutation p.R51Q 0.43 deleterious(0.01) possibly_damaging(0.774) TCGA-A6-2686-01 8 22472447 22472447 C T CCAR2 Silent p.L380L 0.24 TCGA-A6-2686-01 8 22548131 22548131 C T EGR3 Missense_Mutation p.R340H 0.53 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 8 22548700 22548700 G A EGR3 Silent p.C150C 0.28 TCGA-A6-2686-01 8 22548779 22548779 G A EGR3 Missense_Mutation p.T124M 0.38 tolerated(0.11) probably_damaging(0.934) TCGA-A6-2686-01 8 23301424 23301424 G - ENTPD4 Frame_Shift_Del p.V203Cfs*14 0.22 TCGA-A6-2686-01 8 24193003 24193003 C T ADAM28 Silent p.C472C 0.31 TCGA-A6-2686-01 8 24775897 24775897 G - NEFM Frame_Shift_Del p.G845Vfs*10 0.18 TCGA-A6-2686-01 8 25268805 25268805 A T DOCK5 Silent p.G1868G 0.24 TCGA-A6-2686-01 8 25268843 25268843 G A DOCK5 3'UTR 0.31 TCGA-A6-2686-01 8 27311778 27311779 - C PTK2B Frame_Shift_Ins p.E904Rfs*23 0.36 TCGA-A6-2686-01 8 27667891 27667891 G A PBK Silent p.C300C 0.27 TCGA-A6-2686-01 8 28385158 28385159 - T FZD3 Frame_Shift_Ins p.T297Yfs*25 0.15 TCGA-A6-2686-01 8 28929629 28929629 C T KIF13B Missense_Mutation p.A1576T 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.655) TCGA-A6-2686-01 8 28981641 28981641 C T KIF13B Splice_Site p.X1085_splice 0.21 TCGA-A6-2686-01 8 3000116 3000116 T C CSMD1 Missense_Mutation p.S2038G 0.19 probably_damaging(0.986) TCGA-A6-2686-01 8 30040757 30040757 T A DCTN6 3'UTR 0.27 TCGA-A6-2686-01 8 30610592 30610592 A - UBXN8 RNA 0.33 TCGA-A6-2686-01 8 3081272 3081272 A G CSMD1 Missense_Mutation p.V1488A 0.22 possibly_damaging(0.644) TCGA-A6-2686-01 8 30890257 30890257 G A PURG Silent p.G14G 0.42 TCGA-A6-2686-01 8 37823560 37823560 A G ADRB3 Missense_Mutation p.L143P 0.50 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 8 37967900 37967900 C A ASH2L Silent p.S135S 0.46 TCGA-A6-2686-01 8 38107303 38107303 C T DDHD2 Silent p.S442S 0.29 TCGA-A6-2686-01 8 41399363 41399363 A C GINS4 Silent p.R174R 0.35 TCGA-A6-2686-01 8 41467348 41467348 C T AGPAT6 Missense_Mutation p.A137V 0.27 deleterious(0) benign(0.143) TCGA-A6-2686-01 8 41791059 41791059 G A KAT6A Missense_Mutation p.T1560I 0.18 unknown(0) TCGA-A6-2686-01 8 42022997 42022997 G A AP3M2 Missense_Mutation p.R241H 0.26 deleterious(0) probably_damaging(0.978) TCGA-A6-2686-01 8 42196121 42196121 G T POLB 5'UTR 0.55 TCGA-A6-2686-01 8 42705959 42705960 AC - RNF170 3'Flank 0.09 TCGA-A6-2686-01 8 48690322 48690322 C A PRKDC Silent p.R3988R 0.17 TCGA-A6-2686-01 8 48762032 48762032 C T PRKDC Silent p.A2345A 0.23 TCGA-A6-2686-01 8 48775012 48775012 G A PRKDC Silent p.C1946C 0.24 TCGA-A6-2686-01 8 48801582 48801582 C T PRKDC Missense_Mutation p.A1424T 0.08 benign(0.005) TCGA-A6-2686-01 8 48817475 48817477 TTG - PRKDC In_Frame_Del p.N998del 0.35 TCGA-A6-2686-01 8 48885568 48885568 G A MCM4 Missense_Mutation p.A694T 0.22 deleterious(0) probably_damaging(0.978) TCGA-A6-2686-01 8 53044532 53044532 A - ST18 Frame_Shift_Del p.F884Lfs*27 0.26 TCGA-A6-2686-01 8 54870951 54870951 G A RGS20 Missense_Mutation p.R367Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 8 54883008 54883008 C T TCEA1 Missense_Mutation p.A281T 0.11 deleterious(0) possibly_damaging(0.831) TCGA-A6-2686-01 8 55534808 55534808 T C RP1 Silent p.R249R 0.38 TCGA-A6-2686-01 8 55541284 55541284 T C RP1 Silent p.S1614S 0.34 TCGA-A6-2686-01 8 57026205 57026205 G A MOS Missense_Mutation p.R113C 0.10 tolerated(0.09) benign(0.072) TCGA-A6-2686-01 8 59059027 59059027 C T FAM110B Silent p.L80L 0.19 TCGA-A6-2686-01 8 61655221 61655221 T A CHD7 Silent p.P410P 0.48 TCGA-A6-2686-01 8 61768550 61768550 A G CHD7 Missense_Mutation p.N2318S 0.10 benign(0.444) TCGA-A6-2686-01 8 65494477 65494477 G A BHLHE22 Missense_Mutation p.C377Y 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-2686-01 8 67408686 67408688 AGA - C8orf46 In_Frame_Del p.R31del 0.29 TCGA-A6-2686-01 8 67488339 67488339 G A MYBL1 Missense_Mutation p.S458F 0.51 deleterious(0.02) probably_damaging(0.957) TCGA-A6-2686-01 8 67590065 67590065 T C C8orf44 Missense_Mutation p.L41P 0.27 tolerated_low_confidence(0.09) probably_damaging(0.955) TCGA-A6-2686-01 8 67963532 67963532 C T COPS5 Missense_Mutation p.R235H 0.21 tolerated(0.05) benign(0.004) TCGA-A6-2686-01 8 68864698 68864698 G A PREX2 Silent p.L23L 0.43 TCGA-A6-2686-01 8 70541810 70541810 G T SULF1 Missense_Mutation p.R727M 0.45 deleterious(0) possibly_damaging(0.823) TCGA-A6-2686-01 8 70982012 70982012 C T PRDM14 Silent p.A28A 0.34 TCGA-A6-2686-01 8 71068602 71068605 TTTG - NCOA2 Frame_Shift_Del p.N665Kfs*41 0.29 TCGA-A6-2686-01 8 72123392 72123392 T - EYA1 Frame_Shift_Del p.K566Sfs*73 0.29 TCGA-A6-2686-01 8 73984035 73984035 A G SBSPON Silent p.S160S 0.19 TCGA-A6-2686-01 8 75227805 75227805 G A JPH1 Missense_Mutation p.R144C 0.56 deleterious(0) probably_damaging(0.996) TCGA-A6-2686-01 8 77617337 77617337 A - ZFHX4 Frame_Shift_Del p.K340Nfs*15 0.17 TCGA-A6-2686-01 8 77768212 77768212 C T ZFHX4 Missense_Mutation p.R3019C 0.31 probably_damaging(0.989) TCGA-A6-2686-01 8 79717221 79717221 C T IL7 5'UTR 0.18 TCGA-A6-2686-01 8 8185428 8185428 C - SGK223 Frame_Shift_Del p.G955Dfs*11 0.39 TCGA-A6-2686-01 8 82588515 82588516 - T IMPA1 Splice_Site p.X160_splice 0.29 TCGA-A6-2686-01 8 86049719 86049719 C T LRRCC1 Missense_Mutation p.R784C 0.13 deleterious(0.01) benign(0.081) TCGA-A6-2686-01 8 88885083 88885083 C T DCAF4L2 Missense_Mutation p.G373R 0.34 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 8 88885189 88885189 G A DCAF4L2 Silent p.Y337Y 0.21 TCGA-A6-2686-01 8 95448918 95448918 C T FSBP Missense_Mutation p.R60H 0.36 deleterious(0) probably_damaging(0.995) TCGA-A6-2686-01 8 95892471 95892471 A T CCNE2 3'UTR 0.34 TCGA-A6-2686-01 8 95906160 95906160 T - CCNE2 Frame_Shift_Del p.R42Efs*38 0.09 TCGA-A6-2686-01 8 9592963 9592963 T C TNKS Silent p.G870G 0.18 TCGA-A6-2686-01 8 95952411 95952411 T C TP53INP1 Silent p.E50E 0.44 TCGA-A6-2686-01 8 96167876 96167876 T - PLEKHF2 3'UTR 0.22 TCGA-A6-2686-01 8 99170285 99170285 G A POP1 Missense_Mutation p.R954H 0.30 tolerated(0.08) benign(0.023) TCGA-A6-2686-01 8 99440215 99440215 G A KCNS2 Missense_Mutation p.G3D 0.26 deleterious_low_confidence(0.02) benign(0.034) TCGA-A6-2686-01 9 100126345 100126345 C - CCDC180 Frame_Shift_Del p.K1351Sfs*28 0.09 TCGA-A6-2686-01 9 100372721 100372721 C A TSTD2 Nonsense_Mutation p.G248* 0.41 TCGA-A6-2686-01 9 100437782 100437784 TCT - XPA In_Frame_Del p.E253del 0.41 TCGA-A6-2686-01 9 100616629 100616629 C T FOXE1 Missense_Mutation p.R145C 0.29 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 9 100963857 100963857 G A TBC1D2 Silent p.L787L 0.64 TCGA-A6-2686-01 9 102677512 102677512 T - STX17 5'UTR 0.20 TCGA-A6-2686-01 9 103348214 103348214 G T MURC Missense_Mutation p.K192N 0.37 deleterious(0.02) benign(0.377) TCGA-A6-2686-01 9 104075208 104075208 G T LPPR1 Silent p.S255S 0.20 TCGA-A6-2686-01 9 105765438 105765438 A - CYLC2 Frame_Shift_Del p.K26Nfs*36 0.27 TCGA-A6-2686-01 9 107546579 107546579 C T ABCA1 3'UTR 0.53 TCGA-A6-2686-01 9 107594964 107594964 A - ABCA1 Frame_Shift_Del p.L467Wfs*41 0.25 TCGA-A6-2686-01 9 108152162 108152162 A G SLC44A1 3'UTR 0.44 TCGA-A6-2686-01 9 111624664 111624664 C - ACTL7A Frame_Shift_Del p.L23Cfs*11 0.39 TCGA-A6-2686-01 9 111681175 111681175 C T IKBKAP Missense_Mutation p.R219Q 0.49 deleterious(0) probably_damaging(0.992) TCGA-A6-2686-01 9 111903792 111903792 C T FRRS1L Silent p.Q231Q 0.11 TCGA-A6-2686-01 9 113170256 113170256 C T SVEP1 Missense_Mutation p.G2542S 0.31 probably_damaging(0.986) TCGA-A6-2686-01 9 113244694 113244694 G A SVEP1 Missense_Mutation p.A706V 0.15 probably_damaging(1) TCGA-A6-2686-01 9 114089775 114089775 G A OR2K2 Silent p.H313H 0.31 TCGA-A6-2686-01 9 114090248 114090248 C T OR2K2 Missense_Mutation p.A156T 0.27 tolerated(0.06) possibly_damaging(0.73) TCGA-A6-2686-01 9 114180257 114180257 C T KIAA0368 Missense_Mutation p.R708H 0.10 deleterious(0.01) possibly_damaging(0.635) TCGA-A6-2686-01 9 115931656 115931656 C T FKBP15 Silent p.G1111G 0.21 TCGA-A6-2686-01 9 115931889 115931889 A G FKBP15 Missense_Mutation p.S1034P 0.47 tolerated_low_confidence(0.07) benign(0.007) TCGA-A6-2686-01 9 116049016 116049016 C T PRPF4 Silent p.F281F 0.33 TCGA-A6-2686-01 9 116924994 116924994 G - COL27A1 Splice_Site p.X22_splice 0.16 TCGA-A6-2686-01 9 117138763 117138763 G A AKNA Silent p.L442L 0.38 TCGA-A6-2686-01 9 117187492 117187492 G A DFNB31 Intron 0.62 TCGA-A6-2686-01 9 117838805 117838805 G A TNC Silent p.S908S 0.37 TCGA-A6-2686-01 9 117838 117838 C T FOXD4 Silent p.A94A 0.09 TCGA-A6-2686-01 9 117844979 117844979 G A TNC Missense_Mutation p.R747W 0.29 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 9 119097172 119097173 CT - PAPPA Frame_Shift_Del p.L1144Dfs*7 0.38 TCGA-A6-2686-01 9 123367659 123367659 C T MEGF9 Missense_Mutation p.E540K 0.07 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 9 123452214 123452214 A C MEGF9 Intron 0.34 TCGA-A6-2686-01 9 123667340 123667340 G A TRAF1 Silent p.D403D 0.37 TCGA-A6-2686-01 9 123874794 123874794 C T CNTRL Nonsense_Mutation p.Q354* 0.22 TCGA-A6-2686-01 9 123949292 123949294 CTT - RAB14 In_Frame_Del p.R96del 0.37 TCGA-A6-2686-01 9 124065276 124065276 A G GSN Missense_Mutation p.H146R 0.25 deleterious(0.02) probably_damaging(0.978) TCGA-A6-2686-01 9 124914598 124914598 G A NDUFA8 Silent p.R47R 0.45 TCGA-A6-2686-01 9 125551853 125551853 G A OR5C1 Silent p.T214T 0.23 TCGA-A6-2686-01 9 126118554 126118554 G A CRB2 Silent p.R5R 0.24 TCGA-A6-2686-01 9 127119028 127119028 G A PSMB7 Intron 0.09 TCGA-A6-2686-01 9 127220495 127220495 G T GPR144 Missense_Mutation p.E555D 0.24 tolerated(0.49) benign(0.003) TCGA-A6-2686-01 9 127230428 127230428 G A GPR144 Missense_Mutation p.E705K 0.46 deleterious(0) possibly_damaging(0.881) TCGA-A6-2686-01 9 127262989 127262989 G A NR5A1 Missense_Mutation p.R84C 0.32 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 9 127996261 127996261 A - RABEPK 3'UTR 0.14 TCGA-A6-2686-01 9 129453243 129453243 A G LMX1B Missense_Mutation p.K152R 0.42 tolerated(0.17) benign(0.389) TCGA-A6-2686-01 9 129597712 129597712 T - ZBTB43 3'UTR 0.26 TCGA-A6-2686-01 9 129599830 129599830 C T ZBTB43 3'UTR 0.27 TCGA-A6-2686-01 9 130095383 130095383 G T GARNL3 Missense_Mutation p.G251V 0.48 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 9 130494513 130494513 C T TOR2A Missense_Mutation p.A256T 0.36 deleterious(0.03) benign(0.001) TCGA-A6-2686-01 9 130829315 130829315 C A NAIF1 Missense_Mutation p.E22D 0.14 tolerated(0.18) probably_damaging(0.989) TCGA-A6-2686-01 9 130941111 130941111 C T CIZ1 Missense_Mutation p.E459K 0.27 deleterious_low_confidence(0.03) benign(0.437) TCGA-A6-2686-01 9 131020396 131020396 G A GOLGA2 Missense_Mutation p.R764C 0.33 tolerated(0.29) probably_damaging(0.921) TCGA-A6-2686-01 9 13107110 13107110 C A MPDZ Nonsense_Mutation p.G1994* 0.42 TCGA-A6-2686-01 9 131752494 131752494 C T NUP188 Missense_Mutation p.R877C 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 9 131761989 131761989 C T NUP188 Missense_Mutation p.R1250C 0.57 deleterious(0.01) possibly_damaging(0.855) TCGA-A6-2686-01 9 133333820 133333822 GGA - ASS1 In_Frame_Del p.E71del 0.18 TCGA-A6-2686-01 9 134003840 134003840 T - NUP214 Frame_Shift_Del p.F123Lfs*23 0.31 TCGA-A6-2686-01 9 134459953 134459953 C T RAPGEF1 Silent p.K920K 0.30 TCGA-A6-2686-01 9 135251373 135251373 C A TTF1 Missense_Mutation p.G883C 0.17 deleterious_low_confidence(0.03) benign(0.284) TCGA-A6-2686-01 9 135276896 135276896 C T TTF1 Missense_Mutation p.R438Q 0.20 tolerated(0.71) benign(0.001) TCGA-A6-2686-01 9 135772038 135772038 G A TSC1 Missense_Mutation p.R1027W 0.37 deleterious(0.01) possibly_damaging(0.677) TCGA-A6-2686-01 9 135940443 135940443 C T CEL Silent p.P122P 0.33 TCGA-A6-2686-01 9 135985013 135985013 T - RALGDS Frame_Shift_Del p.N195Mfs*73 0.38 TCGA-A6-2686-01 9 136233502 136233502 G A SURF4 Silent p.F95F 0.44 TCGA-A6-2686-01 9 136282890 136282890 C G REXO4 Silent p.T25T 0.35 TCGA-A6-2686-01 9 137023070 137023070 G T WDR5 Silent p.A320A 0.37 TCGA-A6-2686-01 9 137642432 137642432 C A COL5A1 Silent p.P513P 0.21 TCGA-A6-2686-01 9 137696831 137696831 G A COL5A1 Missense_Mutation p.G1042D 0.58 unknown(0) TCGA-A6-2686-01 9 137707450 137707450 G C COL5A1 Missense_Mutation p.G1348A 0.40 unknown(0) TCGA-A6-2686-01 9 138585453 138585455 AAG - SOHLH1 In_Frame_Del p.F385del 0.36 TCGA-A6-2686-01 9 138905774 138905774 G A NACC2 Missense_Mutation p.H365Y 0.22 deleterious(0) possibly_damaging(0.874) TCGA-A6-2686-01 9 139403416 139403416 T A NOTCH1 Missense_Mutation p.D1026V 0.19 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 9 139404325 139404325 C T NOTCH1 Silent p.E943E 0.14 TCGA-A6-2686-01 9 139412283 139412283 G A NOTCH1 Silent p.N454N 0.42 TCGA-A6-2686-01 9 139904313 139904313 C T ABCA2 Missense_Mutation p.A2180T 0.40 deleterious(0) possibly_damaging(0.86) TCGA-A6-2686-01 9 139935415 139935415 C T NPDC1 Missense_Mutation p.R136Q 0.12 tolerated(0.23) benign(0.045) TCGA-A6-2686-01 9 139959217 139959217 C T SAPCD2 Missense_Mutation p.R360H 0.52 deleterious(0) probably_damaging(0.997) TCGA-A6-2686-01 9 140329322 140329322 G A ENTPD8 3'UTR 0.26 TCGA-A6-2686-01 9 14722162 14722162 A G CER1 Splice_Site p.X169_splice 0.27 TCGA-A6-2686-01 9 15474030 15474032 CTT - PSIP1 In_Frame_Del p.E278del 0.23 TCGA-A6-2686-01 9 16419055 16419055 G A BNC2 Nonsense_Mutation p.R1078* 0.21 TCGA-A6-2686-01 9 16435629 16435629 C T BNC2 Missense_Mutation p.V855I 0.27 tolerated(0.08) probably_damaging(0.997) TCGA-A6-2686-01 9 17394911 17394912 - T CNTLN Frame_Shift_Ins p.C821Lfs*2 0.14 TCGA-A6-2686-01 9 19089480 19089480 C T HAUS6 Missense_Mutation p.A172T 0.37 deleterious(0.04) benign(0.392) TCGA-A6-2686-01 9 19116518 19116518 C - PLIN2 Frame_Shift_Del p.V348* 0.18 TCGA-A6-2686-01 9 19619585 19619585 C T SLC24A2 Missense_Mutation p.E359K 0.15 deleterious(0) benign(0.163) TCGA-A6-2686-01 9 2039767 2039767 G A SMARCA2 Silent p.Q219Q 0.15 TCGA-A6-2686-01 9 20414295 20414295 G A MLLT3 Silent p.S183S 0.39 TCGA-A6-2686-01 9 21029318 21029318 C A PTPLAD2 Missense_Mutation p.V40F 0.32 deleterious(0) benign(0.038) TCGA-A6-2686-01 9 21967652 21967652 T - C9orf53 3'UTR 0.13 TCGA-A6-2686-01 9 26984353 26984353 G T IFT74 Missense_Mutation p.R135M 0.35 tolerated(0.06) possibly_damaging(0.688) TCGA-A6-2686-01 9 2718405 2718405 G A KCNV2 Silent p.A222A 0.40 TCGA-A6-2686-01 9 32633670 32633670 G A TAF1L Silent p.R636R 0.21 TCGA-A6-2686-01 9 33053213 33053213 C T SMU1 Missense_Mutation p.V400I 0.24 tolerated(0.38) benign(0.066) TCGA-A6-2686-01 9 33295125 33295125 A G NFX1 Missense_Mutation p.R245G 0.10 deleterious(0.05) benign(0.012) TCGA-A6-2686-01 9 33463830 33463830 C A NOL6 Missense_Mutation p.R998M 0.18 deleterious(0) probably_damaging(0.957) TCGA-A6-2686-01 9 33466939 33466939 G - NOL6 Frame_Shift_Del p.L641Wfs*8 0.23 TCGA-A6-2686-01 9 33469096 33469096 G - NOL6 Frame_Shift_Del p.R296Afs*23 0.37 TCGA-A6-2686-01 9 34256069 34256069 G A KIF24 Missense_Mutation p.T1179M 0.12 deleterious(0.04) benign(0.029) TCGA-A6-2686-01 9 34551904 34551904 G - CNTFR 3'UTR 0.45 TCGA-A6-2686-01 9 34622520 34622520 C T ARID3C Missense_Mutation p.S291N 0.20 tolerated(0.07) benign(0.032) TCGA-A6-2686-01 9 34623517 34623517 G A ARID3C Missense_Mutation p.P257L 0.22 tolerated(0.15) benign(0.004) TCGA-A6-2686-01 9 34637084 34637084 G A SIGMAR1 Missense_Mutation p.R119C 0.38 deleterious(0.01) possibly_damaging(0.465) TCGA-A6-2686-01 9 34662060 34662060 G A CCL27 Missense_Mutation p.R74C 0.23 deleterious(0) probably_damaging(0.993) TCGA-A6-2686-01 9 34971524 34971524 G A KIAA1045 Missense_Mutation p.A77T 0.22 deleterious(0.04) possibly_damaging(0.522) TCGA-A6-2686-01 9 35092040 35092040 C T PIGO Missense_Mutation p.R615Q 0.23 tolerated(0.07) benign(0.037) TCGA-A6-2686-01 9 35697801 35697801 C T TLN1 Missense_Mutation p.R2538Q 0.15 tolerated_low_confidence(0.08) benign(0.293) TCGA-A6-2686-01 9 35733420 35733422 GAG - CREB3 In_Frame_Del p.E126del 0.48 TCGA-A6-2686-01 9 35802215 35802215 G T NPR2 Missense_Mutation p.A549S 0.47 deleterious(0) probably_damaging(0.934) TCGA-A6-2686-01 9 35810674 35810674 G A SPAG8 Missense_Mutation p.R349C 0.36 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 9 37440740 37440742 ATT - ZBTB5 In_Frame_Del p.N603del 0.45 TCGA-A6-2686-01 9 37854865 37854865 T A DCAF10 Missense_Mutation p.L314M 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-A6-2686-01 9 39099959 39099959 C - CNTNAP3 Frame_Shift_Del p.V982Sfs*29 0.11 TCGA-A6-2686-01 9 39361331 39361331 A - SPATA31A1 Frame_Shift_Del p.T1192Qfs*2 0.18 TCGA-A6-2686-01 9 40772476 40772476 C T ZNF658 Silent p.T933T 0.38 TCGA-A6-2686-01 9 40774871 40774872 - T ZNF658 Frame_Shift_Ins p.I135Nfs*4 0.13 TCGA-A6-2686-01 9 4576104 4576104 G A SLC1A1 Missense_Mutation p.A327T 0.22 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 9 6504599 6504599 C T UHRF2 Silent p.L724L 0.37 TCGA-A6-2686-01 9 69200390 69200390 G A FOXD4L6 Missense_Mutation p.A408V 0.17 deleterious_low_confidence(0.04) benign(0.001) TCGA-A6-2686-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.11 deleterious(0.01) possibly_damaging(0.573) TCGA-A6-2686-01 9 738355 738355 T C KANK1 Missense_Mutation p.M1135T 0.33 tolerated(0.37) benign(0.01) TCGA-A6-2686-01 9 74842987 74842987 C T GDA Intron 0.32 TCGA-A6-2686-01 9 77431624 77431624 A G TRPM6 Silent p.I423I 0.36 TCGA-A6-2686-01 9 78710935 78710935 G A PCSK5 Missense_Mutation p.G342R 0.18 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 9 79119415 79119415 C T GCNT1 3'UTR 0.31 TCGA-A6-2686-01 9 79867208 79867208 C A VPS13A Missense_Mutation p.P743H 0.32 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 9 80430608 80430611 TCTT - GNAQ Frame_Shift_Del p.K133Vfs*34 0.19 TCGA-A6-2686-01 9 80881587 80881587 G A CEP78 Missense_Mutation p.S693N 0.36 deleterious_low_confidence(0.02) benign(0.278) TCGA-A6-2686-01 9 84228358 84228358 C T TLE1 Missense_Mutation p.A333T 0.21 tolerated(0.24) benign(0.005) TCGA-A6-2686-01 9 84531040 84531040 G A SPATA31D5P RNA 0.38 TCGA-A6-2686-01 9 84609095 84609095 T C SPATA31D1 Missense_Mutation p.L1237S 0.11 tolerated(0.58) benign(0.058) TCGA-A6-2686-01 9 86495258 86495259 - T KIF27 Frame_Shift_Ins p.R866Kfs*9 0.22 TCGA-A6-2686-01 9 86586984 86586984 G A HNRNPK Missense_Mutation p.R256W 0.41 tolerated(0.07) benign(0) TCGA-A6-2686-01 9 86618841 86618841 A T RMI1 3'UTR 0.29 TCGA-A6-2686-01 9 87285704 87285704 G A NTRK2 Missense_Mutation p.R14Q 0.47 tolerated_low_confidence(0.37) benign(0.003) TCGA-A6-2686-01 9 88692476 88692476 G A GOLM1 Missense_Mutation p.R54C 0.49 deleterious(0) benign(0.082) TCGA-A6-2686-01 9 88943289 88943291 TCT - ZCCHC6 In_Frame_Del p.E525del 0.14 TCGA-A6-2686-01 9 91978881 91978881 G A SECISBP2 3'Flank 0.50 TCGA-A6-2686-01 9 93606535 93606535 C T SYK Missense_Mutation p.P119S 0.40 tolerated(0.47) benign(0.055) TCGA-A6-2686-01 9 95285118 95285119 - A ECM2 Frame_Shift_Ins p.L11Sfs*8 0.34 TCGA-A6-2686-01 9 95420948 95420948 G A IPPK Missense_Mutation p.R33W 0.19 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 9 95738900 95738900 C - FGD3 Frame_Shift_Del p.Q123Rfs*51 0.26 TCGA-A6-2686-01 9 95993263 95993263 G A WNK2 Silent p.T316T 0.22 TCGA-A6-2686-01 9 96051212 96051212 T C WNK2 Silent p.T1429T 0.42 TCGA-A6-2686-01 9 990677 990677 A G DMRT3 Missense_Mutation p.Q364R 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.775) TCGA-A6-2686-01 9 99083474 99083474 C - SLC35D2 3'UTR 0.46 TCGA-A6-2686-01 9 99711963 99711963 C T HIATL2 Missense_Mutation p.G90D 0.35 deleterious(0) probably_damaging(1) TCGA-A6-2686-01 X 100349978 100349978 G A TMEM35 3'UTR 0.70 TCGA-A6-2686-01 X 100547895 100547895 C T TAF7L Missense_Mutation p.A47T 0.57 tolerated(0.4) benign(0.013) TCGA-A6-2686-01 X 100653855 100653856 TT - GLA Frame_Shift_Del p.K240Efs*9 0.46 TCGA-A6-2686-01 X 10106851 10106851 C T WWC3 Missense_Mutation p.L987F 0.62 deleterious(0.01) possibly_damaging(0.771) TCGA-A6-2686-01 X 101396013 101396013 G T TCEAL6 Silent p.A97A 0.71 TCGA-A6-2686-01 X 101912933 101912933 G A GPRASP1 Silent p.P1364P 0.29 TCGA-A6-2686-01 X 102005871 102005871 T C BHLHB9 3'UTR 0.68 TCGA-A6-2686-01 X 103268072 103268072 G A H2BFWT Missense_Mutation p.T54M 0.10 tolerated(0.15) benign(0.006) TCGA-A6-2686-01 X 104464884 104464884 G A TEX13A Silent p.A66A 0.13 TCGA-A6-2686-01 X 106331700 106331701 AT - RBM41 Frame_Shift_Del p.M298Vfs*5 0.21 TCGA-A6-2686-01 X 107434670 107434670 G A COL4A6 Missense_Mutation p.P426L 0.13 unknown(0) TCGA-A6-2686-01 X 108636128 108636128 G A GUCY2F Silent p.L861L 0.76 TCGA-A6-2686-01 X 110973626 110973626 G A ALG13 Missense_Mutation p.R791Q 0.66 tolerated(0.34) benign(0.017) TCGA-A6-2686-01 X 11157142 11157142 C T ARHGAP6 Silent p.T922T 0.29 TCGA-A6-2686-01 X 114425962 114425962 G A RBMXL3 Missense_Mutation p.G653D 0.19 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-A6-2686-01 X 114426787 114426787 G A RBMXL3 Missense_Mutation p.R928H 0.18 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-A6-2686-01 X 117079620 117079620 T C KLHL13 Intron 0.71 TCGA-A6-2686-01 X 117543538 117543538 A - WDR44 Frame_Shift_Del p.N542Mfs*11 0.54 TCGA-A6-2686-01 X 118985743 118985743 A - UPF3B Frame_Shift_Del p.S84Lfs*47 0.27 TCGA-A6-2686-01 X 119077215 119077217 GAG - NKAP In_Frame_Del p.L118del 0.87 TCGA-A6-2686-01 X 119388262 119388262 A C ZBTB33 Missense_Mutation p.E331A 0.19 tolerated_low_confidence(0.42) benign(0.004) TCGA-A6-2686-01 X 123156423 123156423 C T STAG2 5'UTR 0.25 TCGA-A6-2686-01 X 123517769 123517769 C A TENM1 Missense_Mutation p.G2338C 0.62 deleterious(0) probably_damaging(0.999) TCGA-A6-2686-01 X 125298748 125298748 G A DCAF12L2 Missense_Mutation p.A387V 0.24 tolerated(0.53) benign(0.006) TCGA-A6-2686-01 X 125299551 125299551 C T DCAF12L2 Silent p.T119T 0.66 TCGA-A6-2686-01 X 129338765 129338765 C T ZNF280C 3'UTR 0.36 TCGA-A6-2686-01 X 129813618 129813618 C T ENOX2 Missense_Mutation p.E149K 0.31 tolerated(0.06) possibly_damaging(0.616) TCGA-A6-2686-01 X 130192413 130192413 G A ARHGAP36 5'UTR 0.10 TCGA-A6-2686-01 X 134703334 134703334 C T DDX26B Missense_Mutation p.T422I 0.10 deleterious(0) probably_damaging(0.979) TCGA-A6-2686-01 X 135730496 135730496 T - CD40LG Frame_Shift_Del p.I33Sfs*4 0.44 TCGA-A6-2686-01 X 13835046 13835046 C - GPM6B 5'UTR 0.32 TCGA-A6-2686-01 X 138727760 138727760 C T MCF2 Nonsense_Mutation p.W66* 0.68 TCGA-A6-2686-01 X 140969482 140969482 T C MAGEC3 Missense_Mutation p.M270T 0.67 deleterious(0.04) benign(0.149) TCGA-A6-2686-01 X 144910748 144910748 A G TMEM257 3'UTR 0.16 TCGA-A6-2686-01 X 1484131 1484131 C - IL3RA Frame_Shift_Del p.Q289Sfs*21 0.30 TCGA-A6-2686-01 X 149014531 149014531 G A MAGEA8 3'UTR 0.16 TCGA-A6-2686-01 X 151130970 151130970 G A GABRE Missense_Mutation p.T163I 0.75 tolerated(0.21) possibly_damaging(0.741) TCGA-A6-2686-01 X 151935370 151935370 G - MAGEA3 Frame_Shift_Del p.P266Lfs*19 0.28 TCGA-A6-2686-01 X 152845461 152845461 G A ATP2B3 Missense_Mutation p.S1123N 0.80 deleterious(0.01) probably_damaging(0.936) TCGA-A6-2686-01 X 152845786 152845786 G A ATP2B3 3'UTR 0.63 TCGA-A6-2686-01 X 152935920 152935921 - G PNCK Frame_Shift_Ins p.K425Qfs*? 0.16 TCGA-A6-2686-01 X 152956828 152956828 G A SLC6A8 Missense_Mutation p.G155D 0.22 deleterious(0) possibly_damaging(0.745) TCGA-A6-2686-01 X 153038990 153038990 G A PLXNB3 Missense_Mutation p.R1057H 0.74 tolerated(0.33) benign(0.02) TCGA-A6-2686-01 X 15333707 15333708 - A ASB11 Frame_Shift_Ins p.Y8Lfs*4 0.30 TCGA-A6-2686-01 X 153696702 153696702 C T PLXNA3 Silent p.R1340R 0.73 TCGA-A6-2686-01 X 153880427 153880427 C T CTAG2 3'UTR 0.15 TCGA-A6-2686-01 X 154282884 154282886 GAA - FUNDC2 In_Frame_Del p.K171del 0.15 TCGA-A6-2686-01 X 154563680 154563680 C T CLIC2 Silent p.K19K 0.19 TCGA-A6-2686-01 X 155008364 155008364 T C SPRY3 3'UTR 0.32 TCGA-A6-2686-01 X 18912515 18912515 G A PHKA2 Missense_Mutation p.P1115L 0.36 deleterious(0) benign(0.192) TCGA-A6-2686-01 X 20081616 20081616 T C MAP7D2 Silent p.R96R 0.52 TCGA-A6-2686-01 X 208252 208252 C T PLCXD1 Silent p.S160S 0.59 TCGA-A6-2686-01 X 21875139 21875139 G T YY2 Silent p.L179L 0.57 TCGA-A6-2686-01 X 24580589 24580589 G A PCYT1B Silent p.L311L 0.29 TCGA-A6-2686-01 X 2748149 2748149 G T GYG2 5'UTR 0.17 TCGA-A6-2686-01 X 30872570 30872570 C T TAB3 Silent p.T404T 0.58 TCGA-A6-2686-01 X 34961678 34961678 G A FAM47B Missense_Mutation p.A244T 0.55 tolerated(0.13) benign(0.304) TCGA-A6-2686-01 X 34962244 34962244 G A FAM47B Silent p.A432A 0.27 TCGA-A6-2686-01 X 37027930 37027930 G A FAM47C Missense_Mutation p.V483I 0.68 tolerated_low_confidence(0.17) possibly_damaging(0.576) TCGA-A6-2686-01 X 40498305 40498305 T A CXorf38 Missense_Mutation p.N143Y 0.34 deleterious(0) probably_damaging(0.994) TCGA-A6-2686-01 X 41003873 41003873 T - USP9X Frame_Shift_Del p.F472Lfs*19 0.26 TCGA-A6-2686-01 X 46433993 46433993 C T CHST7 Silent p.G209G 0.15 TCGA-A6-2686-01 X 46502775 46502775 G T SLC9A7 Silent p.S503S 0.30 TCGA-A6-2686-01 X 47422655 47422655 G A ARAF Missense_Mutation p.D43N 0.60 tolerated(0.07) possibly_damaging(0.807) TCGA-A6-2686-01 X 47434614 47434614 G A SYN1 Silent p.I406I 0.69 TCGA-A6-2686-01 X 48689626 48689626 G A PCSK1N 3'UTR 0.24 TCGA-A6-2686-01 X 49082387 49082387 C T CACNA1F Nonsense_Mutation p.W556* 0.49 TCGA-A6-2686-01 X 49646534 49646534 G - USP27X 3'UTR 0.31 TCGA-A6-2686-01 X 49646648 49646648 A - USP27X 3'UTR 0.27 TCGA-A6-2686-01 X 49689920 49689920 G A CLCN5 Nonsense_Mutation p.W4* 0.13 TCGA-A6-2686-01 X 50135387 50135387 G A DGKK RNA 0.27 TCGA-A6-2686-01 X 53222742 53222742 G - KDM5C Frame_Shift_Del p.L1399Wfs*5 0.25 TCGA-A6-2686-01 X 53226064 53226064 G A KDM5C Nonsense_Mutation p.R929* 0.65 TCGA-A6-2686-01 X 54957386 54957386 C T TRO Missense_Mutation p.P1410L 0.67 tolerated_low_confidence(1) probably_damaging(0.954) TCGA-A6-2686-01 X 55287033 55287033 C T PAGE3 Missense_Mutation p.G85R 0.68 tolerated(0.19) probably_damaging(0.995) TCGA-A6-2686-01 X 55757859 55757859 A C RRAGB Missense_Mutation p.E147A 0.54 tolerated(0.33) benign(0.058) TCGA-A6-2686-01 X 63444227 63444227 T - ASB12 Frame_Shift_Del p.K315Nfs*46 0.13 TCGA-A6-2686-01 X 66765409 66765409 G A AR Missense_Mutation p.A141T 0.56 tolerated_low_confidence(0.43) benign(0.003) TCGA-A6-2686-01 X 67943795 67943795 G A STARD8 Missense_Mutation p.R1009H 0.54 tolerated(0.08) possibly_damaging(0.651) TCGA-A6-2686-01 X 68381357 68381357 G A PJA1 Silent p.D575D 0.33 TCGA-A6-2686-01 X 70361121 70361121 A G MED12 Silent p.Q2103Q 0.60 TCGA-A6-2686-01 X 70777503 70777503 G A OGT Missense_Mutation p.G528D 0.31 deleterious(0) benign(0.053) TCGA-A6-2686-01 X 71406312 71406312 G A PIN4 Silent p.G40G 0.57 TCGA-A6-2686-01 X 72347288 72347288 C A NAP1L6 3'UTR 0.59 TCGA-A6-2686-01 X 74289224 74289224 C T ABCB7 Silent p.V478V 0.55 TCGA-A6-2686-01 X 76912111 76912112 - A ATRX Frame_Shift_Ins p.Q1385Sfs*6 0.23 TCGA-A6-2686-01 X 7811224 7811224 C T VCX 5'UTR 0.16 TCGA-A6-2686-01 X 79286105 79286105 G A TBX22 Missense_Mutation p.S353N 0.48 tolerated(0.39) benign(0.014) TCGA-A6-2686-01 X 79959010 79959010 C T BRWD3 Missense_Mutation p.R935H 0.52 deleterious(0) probably_damaging(0.972) TCGA-A6-2686-01 X 80064533 80064533 C T BRWD3 Silent p.V33V 0.62 TCGA-A6-2686-01 X 9862460 9862460 A G SHROOM2 Missense_Mutation p.H171R 0.25 tolerated(0.19) possibly_damaging(0.788) TCGA-A6-2686-01 X 99551653 99551653 G A PCDH19 Silent p.S1023S 0.83 TCGA-A6-2686-01 X 99657532 99657532 G T PCDH19 Missense_Mutation p.P869H 0.20 tolerated(0.56) possibly_damaging(0.827) TCGA-A6-3809-01 10 101611554 101611554 A G ABCC2 3'UTR 0.33 TCGA-A6-3809-01 10 101715363 101715363 G T DNMBP Missense_Mutation p.P623H 0.32 deleterious(0) benign(0.006) TCGA-A6-3809-01 10 102822769 102822769 C T KAZALD1 Silent p.H140H 0.37 TCGA-A6-3809-01 10 105037581 105037581 G T INA Missense_Mutation p.G205C 0.35 deleterious(0) probably_damaging(0.979) TCGA-A6-3809-01 10 105785610 105785610 T - SLK 3'UTR 0.30 TCGA-A6-3809-01 10 105795127 105795127 A G COL17A1 Silent p.S1171S 0.30 TCGA-A6-3809-01 10 111893280 111893280 A C ADD3 Missense_Mutation p.E675D 0.27 tolerated(0.15) unknown(0) TCGA-A6-3809-01 10 112839198 112839198 G - ADRA2A 3'UTR 0.18 TCGA-A6-3809-01 10 11505504 11505504 C T USP6NL Missense_Mutation p.A492T 0.22 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 10 119307811 119307811 A - EMX2 3'UTR 0.25 TCGA-A6-3809-01 10 120797783 120797784 TC - EIF3A Frame_Shift_Del p.D1232Cfs*11 0.27 TCGA-A6-3809-01 10 121541227 121541227 A G INPP5F Missense_Mutation p.T87A 0.26 tolerated(0.06) benign(0.243) TCGA-A6-3809-01 10 125780927 125780927 A C CHST15 Missense_Mutation p.L398V 0.21 deleterious(0) benign(0.304) TCGA-A6-3809-01 10 126136638 126136638 G A NKX1-2 Missense_Mutation p.P98L 0.27 tolerated(0.29) benign(0.004) TCGA-A6-3809-01 10 126686649 126686649 G A CTBP2 Missense_Mutation p.T690M 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-A6-3809-01 10 127519134 127519134 A G BCCIP Missense_Mutation p.T109A 0.29 tolerated(0.53) benign(0.032) TCGA-A6-3809-01 10 12858324 12858324 C A CAMK1D Missense_Mutation p.P277Q 0.24 deleterious(0) probably_damaging(0.972) TCGA-A6-3809-01 10 129904754 129904754 T C MKI67 Missense_Mutation p.T1784A 0.26 tolerated(0.13) possibly_damaging(0.625) TCGA-A6-3809-01 10 133787357 133787358 - T BNIP3 Frame_Shift_Ins p.I46Nfs*8 0.25 TCGA-A6-3809-01 10 135012413 135012413 C T KNDC1 Missense_Mutation p.P801S 0.33 tolerated(0.58) benign(0.025) TCGA-A6-3809-01 10 19884162 19884162 A G MALRD1 Missense_Mutation p.Q1286R 0.34 tolerated(0.06) possibly_damaging(0.884) TCGA-A6-3809-01 10 19884340 19884340 C T MALRD1 Silent p.C1345C 0.16 TCGA-A6-3809-01 10 22830872 22830872 C T PIP4K2A Silent p.E299E 0.28 TCGA-A6-3809-01 10 24831678 24831678 C - KIAA1217 Frame_Shift_Del p.Q1199Kfs*12 0.21 TCGA-A6-3809-01 10 26434441 26434441 G T MYO3A Missense_Mutation p.G828V 0.32 deleterious(0) possibly_damaging(0.475) TCGA-A6-3809-01 10 27295868 27295869 - T ANKRD26 Frame_Shift_Ins p.N1659Kfs*4 0.30 TCGA-A6-3809-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.28 TCGA-A6-3809-01 10 3182986 3182986 A G PITRM1 Silent p.R889R 0.27 TCGA-A6-3809-01 10 48438682 48438682 G A GDF10 Missense_Mutation p.P10L 0.29 tolerated_low_confidence(0.34) benign(0) TCGA-A6-3809-01 10 49661457 49661457 T C ARHGAP22 Missense_Mutation p.E309G 0.27 deleterious(0) probably_damaging(0.948) TCGA-A6-3809-01 10 51562359 51562359 G T MSMB Missense_Mutation p.D102Y 0.23 deleterious(0) possibly_damaging(0.889) TCGA-A6-3809-01 10 5203817 5203817 A G AKR1CL1 Splice_Site p.X126_splice 0.31 TCGA-A6-3809-01 10 52103641 52103641 G A SGMS1 Silent p.N78N 0.31 TCGA-A6-3809-01 10 52601749 52601749 C T A1CF Missense_Mutation p.G88S 0.28 deleterious(0.01) possibly_damaging(0.703) TCGA-A6-3809-01 10 54074381 54074381 G A DKK1 Missense_Mutation p.A63T 0.28 tolerated(0.38) benign(0.006) TCGA-A6-3809-01 10 6154285 6154285 C T RBM17 Missense_Mutation p.R273C 0.32 deleterious(0) possibly_damaging(0.88) TCGA-A6-3809-01 10 61718602 61718602 A - C10orf40 5'UTR 0.19 TCGA-A6-3809-01 10 6470032 6470032 T C PRKCQ 3'UTR 0.20 TCGA-A6-3809-01 10 64966588 64966588 T A JMJD1C Missense_Mutation p.N1614I 0.37 deleterious(0.04) benign(0.025) TCGA-A6-3809-01 10 70406707 70406707 A - TET1 Frame_Shift_Del p.N1409Tfs*2 0.18 TCGA-A6-3809-01 10 72061194 72061194 G A LRRC20 Silent p.N157N 0.20 TCGA-A6-3809-01 10 73051243 73051243 G A UNC5B Missense_Mutation p.G450D 0.25 tolerated(0.05) benign(0.367) TCGA-A6-3809-01 10 73111399 73111399 T C SLC29A3 Missense_Mutation p.V155A 0.06 deleterious(0) possibly_damaging(0.529) TCGA-A6-3809-01 10 73450248 73450248 G A CDH23 Missense_Mutation p.A287T 0.32 deleterious(0) probably_damaging(0.991) TCGA-A6-3809-01 10 73521724 73521724 G A C10orf54 Nonsense_Mutation p.Q48* 0.27 TCGA-A6-3809-01 10 75551702 75551702 G T ZSWIM8 Nonsense_Mutation p.E469* 0.30 TCGA-A6-3809-01 10 7659232 7659232 A G ITIH5 Silent p.P222P 0.10 TCGA-A6-3809-01 10 81904060 81904060 C - PLAC9 Frame_Shift_Del p.P83Rfs*46 0.23 TCGA-A6-3809-01 10 88705347 88705347 T A MMRN2 Silent p.G88G 0.29 TCGA-A6-3809-01 10 89419665 89419665 C T PAPSS2 5'UTR 0.25 TCGA-A6-3809-01 10 94659438 94659438 T - EXOC6 Intron 0.24 TCGA-A6-3809-01 10 95141118 95141118 G T MYOF Silent p.A578A 0.25 TCGA-A6-3809-01 10 95552633 95552633 A G LGI1 Missense_Mutation p.S213G 0.33 deleterious(0.03) benign(0.065) TCGA-A6-3809-01 10 99771077 99771077 C T CRTAC1 Silent p.P14P 0.12 TCGA-A6-3809-01 11 100933393 100933393 C T PGR Missense_Mutation p.S666N 0.27 tolerated(0.26) benign(0.012) TCGA-A6-3809-01 11 102195583 102195583 T G BIRC3 Missense_Mutation p.S115A 0.32 tolerated(0.85) benign(0.005) TCGA-A6-3809-01 11 103907768 103907768 T - DDI1 Frame_Shift_Del p.L74Yfs*21 0.25 TCGA-A6-3809-01 11 107663428 107663428 G A SLC35F2 Silent p.S346S 0.16 TCGA-A6-3809-01 11 108031925 108031925 A G NPAT Silent p.S1296S 0.29 TCGA-A6-3809-01 11 1096334 1096334 C T MUC2 Missense_Mutation p.T2120M 0.37 unknown(0) TCGA-A6-3809-01 11 110479759 110479759 A T ARHGAP20 Missense_Mutation p.Y242N 0.30 deleterious(0) probably_damaging(0.992) TCGA-A6-3809-01 11 111591321 111591321 A G SIK2 Missense_Mutation p.M539V 0.28 tolerated(1) benign(0) TCGA-A6-3809-01 11 111781010 111781010 A G CRYAB Intron 0.25 TCGA-A6-3809-01 11 111957421 111957421 T C TIMM8B Silent p.E24E 0.16 TCGA-A6-3809-01 11 113697985 113697985 A G USP28 Missense_Mutation p.L386P 0.26 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 11 11454220 11454220 C T GALNT18 Silent p.T181T 0.16 TCGA-A6-3809-01 11 115099867 115099867 T C CADM1 Silent p.G229G 0.30 TCGA-A6-3809-01 11 116733003 116733003 T C SIK3 Missense_Mutation p.D609G 0.05 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A6-3809-01 11 118402960 118402960 G - TMEM25 Frame_Shift_Del p.P58Lfs*23 0.29 TCGA-A6-3809-01 11 119535785 119535785 T C PVRL1 Missense_Mutation p.H409R 0.30 tolerated(0.06) possibly_damaging(0.617) TCGA-A6-3809-01 11 119996547 119996547 G A TRIM29 Silent p.T395T 0.06 TCGA-A6-3809-01 11 121461790 121461790 G A SORL1 Missense_Mutation p.V1432M 0.31 deleterious(0) possibly_damaging(0.854) TCGA-A6-3809-01 11 122928442 122928442 T A HSPA8 Nonstop_Mutation p.*647Yext*5 0.22 TCGA-A6-3809-01 11 123753852 123753852 G T TMEM225 Missense_Mutation p.A224D 0.19 deleterious(0) possibly_damaging(0.908) TCGA-A6-3809-01 11 123814355 123814355 C T OR6T1 Missense_Mutation p.R64Q 0.37 tolerated(0.39) benign(0.006) TCGA-A6-3809-01 11 124738890 124738890 T C ROBO3 Missense_Mutation p.L118P 0.32 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 11 129752496 129752496 T - NFRKB Frame_Shift_Del p.K336Rfs*13 0.29 TCGA-A6-3809-01 11 130319611 130319611 C T ADAMTS15 Missense_Mutation p.T248M 0.16 tolerated(0.18) probably_damaging(0.955) TCGA-A6-3809-01 11 133715304 133715304 C T SPATA19 Missense_Mutation p.R13Q 0.25 deleterious(0.01) possibly_damaging(0.776) TCGA-A6-3809-01 11 134010576 134010576 C T JAM3 Missense_Mutation p.T56M 0.13 tolerated(0.06) benign(0.223) TCGA-A6-3809-01 11 134048810 134048810 C A NCAPD3 Missense_Mutation p.G861W 0.26 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 11 17452354 17452354 C A ABCC8 Intron 0.38 TCGA-A6-3809-01 11 19970559 19970559 G A NAV2 Missense_Mutation p.A883T 0.31 tolerated(0.22) benign(0.014) TCGA-A6-3809-01 11 20065670 20065670 C T NAV2 Silent p.D1040D 0.25 TCGA-A6-3809-01 11 2356865 2356865 G A CD81-AS1 Intron 0.25 TCGA-A6-3809-01 11 27390270 27390270 A C LGR4 Missense_Mutation p.L667R 0.06 tolerated(0.08) possibly_damaging(0.653) TCGA-A6-3809-01 11 28056947 28056947 G A KIF18A Missense_Mutation p.R831W 0.19 deleterious(0.03) benign(0.058) TCGA-A6-3809-01 11 2985912 2985912 T A NAP1L4 Missense_Mutation p.M202L 0.06 tolerated(0.15) benign(0.238) TCGA-A6-3809-01 11 3078596 3078596 A G CARS Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0) benign(0.046) TCGA-A6-3809-01 11 3124501 3124501 A G OSBPL5 Missense_Mutation p.W432R 0.28 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 11 32954226 32954226 T G QSER1 Silent p.G345G 0.25 TCGA-A6-3809-01 11 34118841 34118841 C T CAPRIN1 Missense_Mutation p.R667W 0.27 deleterious(0) possibly_damaging(0.565) TCGA-A6-3809-01 11 35641877 35641877 C T FJX1 3'UTR 0.33 TCGA-A6-3809-01 11 36599907 36599907 T - RAG1 3'UTR 0.27 TCGA-A6-3809-01 11 43465681 43465681 G T TTC17 Missense_Mutation p.G863C 0.30 deleterious(0.01) possibly_damaging(0.599) TCGA-A6-3809-01 11 47594388 47594388 A - KBTBD4 3'UTR 0.30 TCGA-A6-3809-01 11 48510482 48510482 C T OR4A47 Silent p.T46T 0.32 TCGA-A6-3809-01 11 5255394 5255394 C T HBD Missense_Mutation p.D48N 0.14 tolerated(1) benign(0.04) TCGA-A6-3809-01 11 5364067 5364067 C A OR51B5 Nonsense_Mutation p.E230* 0.35 TCGA-A6-3809-01 11 55371541 55371541 A T OR4C11 Missense_Mutation p.H103Q 0.22 deleterious(0.01) probably_damaging(0.925) TCGA-A6-3809-01 11 558318 558318 G A C11orf35 Intron 0.29 TCGA-A6-3809-01 11 55890030 55890031 - T OR8H3 Frame_Shift_Ins p.L64Pfs*8 0.22 TCGA-A6-3809-01 11 562540 562540 C G RASSF7 Missense_Mutation p.L196V 0.33 deleterious(0.04) probably_damaging(0.996) TCGA-A6-3809-01 11 57995891 57995891 G T OR10Q1 Missense_Mutation p.L153M 0.34 deleterious(0.05) benign(0.257) TCGA-A6-3809-01 11 5799862 5799862 C A OR52N5 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) unknown(0) TCGA-A6-3809-01 11 58949757 58949757 G A DTX4 Missense_Mutation p.A253T 0.27 tolerated(0.5) benign(0.001) TCGA-A6-3809-01 11 59417005 59417005 T C PATL1 Missense_Mutation p.M555V 0.23 tolerated(0.55) benign(0.003) TCGA-A6-3809-01 11 60620756 60620756 G A PTGDR2 Missense_Mutation p.A147V 0.30 tolerated(0.24) benign(0.016) TCGA-A6-3809-01 11 60698056 60698056 A G TMEM132A Missense_Mutation p.D314G 0.25 tolerated(0.1) benign(0.286) TCGA-A6-3809-01 11 61669979 61669979 G T RAB3IL1 Missense_Mutation p.R312S 0.35 deleterious(0.03) benign(0.166) TCGA-A6-3809-01 11 62384218 62384218 G A B3GAT3 Silent p.G223G 0.24 TCGA-A6-3809-01 11 62393316 62393316 C T GANAB Missense_Mutation p.A958T 0.24 deleterious(0.04) benign(0.034) TCGA-A6-3809-01 11 62557919 62557919 T G TMEM223 3'UTR 0.62 TCGA-A6-3809-01 11 63884184 63884184 C T FLRT1 Missense_Mutation p.R149C 0.19 deleterious(0) possibly_damaging(0.687) TCGA-A6-3809-01 11 6411908 6411908 C - SMPD1 Frame_Shift_Del p.G29Dfs*48 0.24 TCGA-A6-3809-01 11 64120577 64120577 T C CCDC88B Silent p.G1184G 0.08 TCGA-A6-3809-01 11 64329546 64329546 G A SLC22A11 Missense_Mutation p.A190T 0.24 tolerated(0.08) possibly_damaging(0.627) TCGA-A6-3809-01 11 64390407 64390407 C T NRXN2 Missense_Mutation p.V1331M 0.36 tolerated(0.07) probably_damaging(0.973) TCGA-A6-3809-01 11 64606508 64606508 G A CDC42BPG Silent p.H291H 0.35 TCGA-A6-3809-01 11 64897251 64897251 G A SYVN1 Silent p.D515D 0.34 TCGA-A6-3809-01 11 65366962 65366962 G A MAP3K11 Silent p.P703P 0.41 TCGA-A6-3809-01 11 66468667 66468667 G A SPTBN2 Missense_Mutation p.T968M 0.16 deleterious(0.04) possibly_damaging(0.841) TCGA-A6-3809-01 11 66618225 66618225 G A PC Missense_Mutation p.A798V 0.17 tolerated(1) benign(0.001) TCGA-A6-3809-01 11 6662297 6662297 G A DCHS1 Missense_Mutation p.S183F 0.37 deleterious(0.02) probably_damaging(0.916) TCGA-A6-3809-01 11 66802126 66802126 C - SYT12 Frame_Shift_Del p.P17Lfs*21 0.36 TCGA-A6-3809-01 11 67789312 67789312 C T ALDH3B1 Nonsense_Mutation p.Q306* 0.32 TCGA-A6-3809-01 11 68206098 68206098 C T LRP5 Silent p.H1432H 0.28 TCGA-A6-3809-01 11 68475617 68475617 G A MTL5 3'UTR 0.58 TCGA-A6-3809-01 11 68517872 68517872 C - MTL5 Frame_Shift_Del p.G86Afs*70 0.22 TCGA-A6-3809-01 11 68773314 68773314 C A MRGPRF Missense_Mutation p.R155L 0.36 deleterious(0) probably_damaging(0.977) TCGA-A6-3809-01 11 71948755 71948755 G A INPPL1 Missense_Mutation p.R1156Q 0.23 deleterious(0.04) benign(0.238) TCGA-A6-3809-01 11 72551960 72551960 T C FCHSD2 Missense_Mutation p.R701G 0.27 deleterious(0.03) benign(0.396) TCGA-A6-3809-01 11 74994349 74994349 A G ARRB1 Silent p.A112A 0.33 TCGA-A6-3809-01 11 76751268 76751268 G A B3GNT6 Missense_Mutation p.V225M 0.18 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 11 82443487 82443487 G A FAM181B 3'UTR 0.24 TCGA-A6-3809-01 11 85429864 85429864 C T SYTL2 Silent p.Q850Q 0.24 TCGA-A6-3809-01 11 85630562 85630562 G A CCDC83 3'UTR 0.24 TCGA-A6-3809-01 11 86521682 86521683 - T PRSS23 3'UTR 0.27 TCGA-A6-3809-01 11 88300345 88300345 C T GRM5 Missense_Mutation p.A836T 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-A6-3809-01 11 9075225 9075225 T C SCUBE2 Missense_Mutation p.H430R 0.09 tolerated(1) benign(0.088) TCGA-A6-3809-01 11 9167303 9167303 C T DENND5A Missense_Mutation p.A973T 0.23 deleterious(0.04) possibly_damaging(0.752) TCGA-A6-3809-01 11 93103249 93103249 C T CCDC67 Missense_Mutation p.A148V 0.30 tolerated(0.11) benign(0.024) TCGA-A6-3809-01 11 9452446 9452446 C A IPO7 Missense_Mutation p.Q593K 0.24 tolerated(0.07) benign(0.146) TCGA-A6-3809-01 11 94732551 94732551 C A KDM4D 3'UTR 0.22 TCGA-A6-3809-01 12 100441306 100441306 A G UHRF1BP1L Splice_Site p.X1361_splice 0.26 TCGA-A6-3809-01 12 100497713 100497713 A C UHRF1BP1L Missense_Mutation p.L75R 0.04 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 12 100774559 100774560 - C SLC17A8 Frame_Shift_Ins p.L64Tfs*44 0.20 TCGA-A6-3809-01 12 101505349 101505349 T C ANO4 Missense_Mutation p.Y736H 0.27 tolerated(0.4) benign(0.036) TCGA-A6-3809-01 12 104124020 104124020 T C STAB2 Missense_Mutation p.S1737P 0.18 tolerated(0.1) benign(0.296) TCGA-A6-3809-01 12 106461046 106461046 G - NUAK1 Frame_Shift_Del p.P507Rfs*6 0.31 TCGA-A6-3809-01 12 109889504 109889504 C T KCTD10 Missense_Mutation p.G280R 0.29 tolerated(0.09) possibly_damaging(0.622) TCGA-A6-3809-01 12 11035670 11035670 G A PRH1 Silent p.L30L 0.50 TCGA-A6-3809-01 12 112518904 112518904 T - NAA25 Frame_Shift_Del p.N146Ifs*8 0.32 TCGA-A6-3809-01 12 113307563 113307563 G T RPH3A Splice_Site p.X204_splice 0.20 TCGA-A6-3809-01 12 11338710 11338710 C T TAS2R42 Silent p.S278S 0.43 TCGA-A6-3809-01 12 115112616 115112616 C T TBX3 Missense_Mutation p.S375N 0.39 deleterious(0.04) probably_damaging(0.992) TCGA-A6-3809-01 12 117290621 117290621 C T RNFT2 3'Flank 0.29 TCGA-A6-3809-01 12 120214504 120214504 G A CIT Missense_Mutation p.A603V 0.21 tolerated(0.44) benign(0.001) TCGA-A6-3809-01 12 120652985 120652985 T C PXN Missense_Mutation p.Q356R 0.10 deleterious(0.02) benign(0.43) TCGA-A6-3809-01 12 120741406 120741406 C T SIRT4 Silent p.G14G 0.41 TCGA-A6-3809-01 12 120941637 120941637 C T COQ5 Missense_Mutation p.E312K 0.04 tolerated(0.09) benign(0.126) TCGA-A6-3809-01 12 121176172 121176172 G A ACADS Silent p.T238T 0.52 TCGA-A6-3809-01 12 121441903 121441903 G - C12orf43 3'UTR 0.37 TCGA-A6-3809-01 12 122261078 122261079 - T SETD1B Frame_Shift_Ins p.L1489Ffs*35 0.11 TCGA-A6-3809-01 12 123344732 123344734 AGA - HIP1R In_Frame_Del p.K846del 0.26 TCGA-A6-3809-01 12 123463757 123463757 G A OGFOD2 Nonsense_Mutation p.W246* 0.21 TCGA-A6-3809-01 12 123465099 123465099 G A ARL6IP4 Silent p.G55G 0.25 TCGA-A6-3809-01 12 124831139 124831139 G A NCOR2 Missense_Mutation p.R1444W 0.21 probably_damaging(0.999) TCGA-A6-3809-01 12 124839988 124839988 G A NCOR2 Missense_Mutation p.A1124V 0.18 possibly_damaging(0.614) TCGA-A6-3809-01 12 12630509 12630509 C T DUSP16 Missense_Mutation p.G419D 0.46 deleterious(0.01) benign(0.066) TCGA-A6-3809-01 12 130647541 130647541 C T FZD10 Silent p.C18C 0.29 TCGA-A6-3809-01 12 130922952 130922952 G A RIMBP2 Silent p.G521G 0.26 TCGA-A6-3809-01 12 131293210 131293210 C T STX2 Missense_Mutation p.R107Q 0.33 tolerated(0.06) benign(0.089) TCGA-A6-3809-01 12 132394835 132394835 C A ULK1 Missense_Mutation p.P282H 0.28 deleterious(0) benign(0.235) TCGA-A6-3809-01 12 132632427 132632428 - C NOC4L Frame_Shift_Ins p.A205Rfs*74 0.35 TCGA-A6-3809-01 12 133226417 133226417 T G POLE Missense_Mutation p.D1214A 0.49 deleterious(0.03) possibly_damaging(0.839) TCGA-A6-3809-01 12 15035042 15035042 A - MGP 3'UTR 0.08 TCGA-A6-3809-01 12 19427544 19427545 - A PLEKHA5 Frame_Shift_Ins p.N316Kfs*8 0.18 TCGA-A6-3809-01 12 19665357 19665357 C A AEBP2 Missense_Mutation p.S442Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-A6-3809-01 12 2062114 2062114 G T DCP1B Missense_Mutation p.P331H 0.27 tolerated(0.12) possibly_damaging(0.717) TCGA-A6-3809-01 12 21030707 21030707 T - SLCO1B3 Frame_Shift_Del p.F326Sfs*4 0.11 TCGA-A6-3809-01 12 22408290 22408290 C T ST8SIA1 Missense_Mutation p.A139T 0.29 deleterious(0) benign(0.419) TCGA-A6-3809-01 12 22486966 22486966 C T ST8SIA1 Silent p.A67A 0.09 TCGA-A6-3809-01 12 27117753 27117753 T - FGFR1OP2 3'UTR 0.24 TCGA-A6-3809-01 12 278222 278222 G A IQSEC3 Silent p.K1005K 0.31 TCGA-A6-3809-01 12 28605565 28605565 A G CCDC91 Missense_Mutation p.Q360R 0.26 tolerated(0.07) benign(0.019) TCGA-A6-3809-01 12 34179976 34179976 T - ALG10 3'UTR 0.18 TCGA-A6-3809-01 12 3686080 3686080 C T PRMT8 Silent p.D252D 0.19 TCGA-A6-3809-01 12 39299388 39299388 C T CPNE8 5'UTR 0.21 TCGA-A6-3809-01 12 40013179 40013179 A G ABCD2 Missense_Mutation p.V80A 0.41 tolerated(0.05) benign(0.084) TCGA-A6-3809-01 12 419069 419069 A G KDM5A Missense_Mutation p.V1093A 0.20 tolerated(0.59) benign(0.002) TCGA-A6-3809-01 12 4385293 4385293 G C CCND2 Missense_Mutation p.M106I 0.19 deleterious(0.05) benign(0.018) TCGA-A6-3809-01 12 4488630 4488630 A G FGF23 Missense_Mutation p.I40T 0.10 tolerated(0.83) benign(0.002) TCGA-A6-3809-01 12 47472470 47472470 T C AMIGO2 Missense_Mutation p.T106A 0.47 tolerated(0.55) benign(0.014) TCGA-A6-3809-01 12 4758309 4758309 A G NDUFA9 Missense_Mutation p.Q6R 0.59 tolerated(0.42) benign(0) TCGA-A6-3809-01 12 48144137 48144137 T C RAPGEF3 Missense_Mutation p.H248R 0.18 deleterious(0) benign(0.007) TCGA-A6-3809-01 12 48174640 48174640 G A SLC48A1 3'UTR 0.10 TCGA-A6-3809-01 12 49061553 49061553 C T KANSL2 Missense_Mutation p.S299N 0.42 tolerated(0.29) benign(0.009) TCGA-A6-3809-01 12 49086789 49086789 T - CCNT1 3'UTR 0.16 TCGA-A6-3809-01 12 49254844 49254844 C T RND1 Missense_Mutation p.R130Q 0.23 deleterious(0) probably_damaging(0.995) TCGA-A6-3809-01 12 49438647 49438647 G A KMT2D Nonsense_Mutation p.R1615* 0.50 TCGA-A6-3809-01 12 49579323 49579323 T C TUBA1A Missense_Mutation p.I276V 0.05 tolerated_low_confidence(0.2) benign(0.019) TCGA-A6-3809-01 12 49948155 49948155 C T KCNH3 Missense_Mutation p.R652W 0.26 deleterious(0.03) possibly_damaging(0.892) TCGA-A6-3809-01 12 50190225 50190225 C T NCKAP5L Missense_Mutation p.G473D 0.20 deleterious(0.03) benign(0.433) TCGA-A6-3809-01 12 5025080 5025080 G A KCNA1 3'UTR 0.41 TCGA-A6-3809-01 12 50869876 50869876 C T LARP4 3'UTR 0.39 TCGA-A6-3809-01 12 5153946 5153946 G A KCNA5 Silent p.E211E 0.29 TCGA-A6-3809-01 12 5154806 5154806 C T KCNA5 Missense_Mutation p.S498L 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 12 51748146 51748147 - G GALNT6 3'UTR 0.19 TCGA-A6-3809-01 12 52282075 52282076 - C ANKRD33 Frame_Shift_Ins p.R37Pfs*3 0.12 TCGA-A6-3809-01 12 52387815 52387815 A G ACVR1B Missense_Mutation p.N521S 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-A6-3809-01 12 52450313 52450313 C T NR4A1 Missense_Mutation p.R361W 0.18 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 12 52566829 52566829 T C KRT80 Missense_Mutation p.K317R 0.55 deleterious(0.04) probably_damaging(0.964) TCGA-A6-3809-01 12 52775275 52775275 G A KRT84 Missense_Mutation p.T316M 0.41 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 12 52882258 52882258 C A KRT6A Missense_Mutation p.K426N 0.04 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 12 52886930 52886930 G T KRT6A Missense_Mutation p.R15S 0.47 deleterious(0.04) unknown(0) TCGA-A6-3809-01 12 52946782 52946782 C - KRT71 Frame_Shift_Del p.G27Afs*111 0.28 TCGA-A6-3809-01 12 53165748 53165748 A G KRT76 Silent p.H390H 0.18 TCGA-A6-3809-01 12 53668627 53668628 AG - ESPL1 Frame_Shift_Del p.S513Ffs*6 0.28 TCGA-A6-3809-01 12 53703450 53703450 T C AAAS Missense_Mutation p.S249G 0.05 deleterious(0) probably_damaging(0.992) TCGA-A6-3809-01 12 53714426 53714426 A G AAAS Silent p.P58P 0.37 TCGA-A6-3809-01 12 53875958 53875961 TAGA - MAP3K12 Frame_Shift_Del p.S782Pfs*? 0.09 TCGA-A6-3809-01 12 54394243 54394243 C T HOXC9 Missense_Mutation p.R91C 0.27 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 12 56604081 56604081 C T RNF41 Missense_Mutation p.G121D 0.30 deleterious(0.01) probably_damaging(0.941) TCGA-A6-3809-01 12 57396903 57396903 G T ZBTB39 Missense_Mutation p.P600H 0.19 tolerated(0.1) benign(0.299) TCGA-A6-3809-01 12 64480799 64480799 A G SRGAP1 Missense_Mutation p.T477A 0.16 tolerated(0.29) benign(0.002) TCGA-A6-3809-01 12 65088610 65088610 A G RASSF3 Missense_Mutation p.Q212R 0.23 tolerated(0.51) probably_damaging(0.998) TCGA-A6-3809-01 12 66923611 66923611 C A GRIP1 Missense_Mutation p.G168W 0.57 deleterious(0) possibly_damaging(0.888) TCGA-A6-3809-01 12 6707538 6707538 C T CHD4 Silent p.Q512Q 0.23 TCGA-A6-3809-01 12 67706721 67706721 T - CAND1 3'UTR 0.27 TCGA-A6-3809-01 12 69202227 69202227 G A MDM2 5'UTR 0.29 TCGA-A6-3809-01 12 70003866 70003866 T - LRRC10 Frame_Shift_Del p.A252Pfs*79 0.12 TCGA-A6-3809-01 12 70091534 70091534 A - BEST3 Frame_Shift_Del p.F15Lfs*32 0.11 TCGA-A6-3809-01 12 81471882 81471882 C T ACSS3 5'UTR 0.16 TCGA-A6-3809-01 12 83290316 83290316 T C TMTC2 Silent p.A458A 0.16 TCGA-A6-3809-01 12 85266951 85266951 A C SLC6A15 Missense_Mutation p.F342V 0.04 tolerated(0.06) probably_damaging(0.999) TCGA-A6-3809-01 12 85515548 85515548 C A LRRIQ1 Missense_Mutation p.R1151S 0.53 tolerated(0.35) benign(0.024) TCGA-A6-3809-01 12 86198390 86198390 T - RASSF9 3'UTR 0.13 TCGA-A6-3809-01 12 8666271 8666271 A - CLEC4D 5'UTR 0.43 TCGA-A6-3809-01 12 9013800 9013800 C G A2ML1 Missense_Mutation p.Q1137E 0.23 tolerated(0.39) benign(0.026) TCGA-A6-3809-01 12 93968433 93968433 T C SOCS2 Intron 0.12 TCGA-A6-3809-01 12 95602640 95602640 C T FGD6 Missense_Mutation p.G807E 0.23 tolerated(0.12) benign(0.043) TCGA-A6-3809-01 12 95681627 95681627 A - VEZT Frame_Shift_Del p.G508Afs*5 0.16 TCGA-A6-3809-01 12 98126360 98126360 C T RP11-1016B18.1 RNA 0.25 TCGA-A6-3809-01 12 98849625 98849625 C T SLC9A7P1 RNA 0.28 TCGA-A6-3809-01 12 98992444 98992444 G A SLC25A3 Missense_Mutation p.A203T 0.19 tolerated(0.07) benign(0.123) TCGA-A6-3809-01 12 994437 994437 A G WNK1 Silent p.L1489L 0.23 TCGA-A6-3809-01 13 100925452 100925452 T - PCCA Frame_Shift_Del p.L308Wfs*14 0.26 TCGA-A6-3809-01 13 101910916 101910916 G A NALCN Missense_Mutation p.R382W 0.34 deleterious(0) possibly_damaging(0.696) TCGA-A6-3809-01 13 108883354 108883354 A C ABHD13 3'UTR 0.32 TCGA-A6-3809-01 13 109379898 109379898 C T MYO16 Silent p.C136C 0.32 TCGA-A6-3809-01 13 112723231 112723231 C T SOX1 3'UTR 0.22 TCGA-A6-3809-01 13 21742368 21742368 C T SKA3 Missense_Mutation p.V168I 0.34 tolerated(1) benign(0.004) TCGA-A6-3809-01 13 24895144 24895144 A - C1QTNF9 Frame_Shift_Del p.V82Lfs*99 0.24 TCGA-A6-3809-01 13 25745473 25745473 C A AMER2 Silent p.S95S 0.25 TCGA-A6-3809-01 13 26956983 26956983 T C CDK8 Silent p.G163G 0.19 TCGA-A6-3809-01 13 29898826 29898826 A G MTUS2 Silent p.S971S 0.27 TCGA-A6-3809-01 13 31233376 31233376 G T USPL1 Missense_Mutation p.E1054D 0.28 tolerated(0.06) possibly_damaging(0.455) TCGA-A6-3809-01 13 32721444 32721444 T C FRY Missense_Mutation p.V402A 0.36 deleterious(0) probably_damaging(0.951) TCGA-A6-3809-01 13 33017988 33017988 T - N4BP2L2 Frame_Shift_Del p.N229Ifs*14 0.23 TCGA-A6-3809-01 13 38158888 38158888 A G POSTN Missense_Mutation p.I358T 0.26 deleterious(0) possibly_damaging(0.665) TCGA-A6-3809-01 13 38210884 38210884 T G TRPC4 3'UTR 0.50 TCGA-A6-3809-01 13 41341161 41341161 T - MRPS31 Frame_Shift_Del p.N54Ifs*12 0.18 TCGA-A6-3809-01 13 41767328 41767328 A C KBTBD7 Missense_Mutation p.F356V 0.28 tolerated(0.49) possibly_damaging(0.688) TCGA-A6-3809-01 13 42866602 42866602 T C AKAP11 Missense_Mutation p.C45R 0.27 deleterious(0.05) benign(0.047) TCGA-A6-3809-01 13 43463360 43463360 A - EPSTI1 Frame_Shift_Del p.S323Rfs*4 0.23 TCGA-A6-3809-01 13 45767699 45767699 T C KCTD4 3'UTR 0.30 TCGA-A6-3809-01 13 52832691 52832691 T C RP11-248G5.8 RNA 0.33 TCGA-A6-3809-01 13 53420618 53420618 C T PCDH8 Missense_Mutation p.E652K 0.17 tolerated(1) benign(0.009) TCGA-A6-3809-01 13 58208254 58208254 T G PCDH17 Missense_Mutation p.V525G 0.20 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 13 61987976 61987976 C T PCDH20 Missense_Mutation p.A86T 0.27 tolerated(0.21) benign(0.114) TCGA-A6-3809-01 13 88328419 88328420 - G SLITRK5 Frame_Shift_Ins p.D261Gfs*5 0.18 TCGA-A6-3809-01 13 95055380 95055380 A C GPC6 Missense_Mutation p.E526A 0.12 tolerated(0.65) benign(0.01) TCGA-A6-3809-01 13 98828581 98828581 C T RNF113B Missense_Mutation p.A304T 0.37 deleterious(0) probably_damaging(0.962) TCGA-A6-3809-01 14 100125895 100125895 G A HHIPL1 Missense_Mutation p.V393M 0.24 deleterious(0) probably_damaging(0.994) TCGA-A6-3809-01 14 100141909 100141909 C T HHIPL1 Silent p.C765C 0.23 TCGA-A6-3809-01 14 100192965 100192965 C T CYP46A1 Silent p.F468F 0.27 TCGA-A6-3809-01 14 100380551 100380551 C T EML1 Silent p.A529A 0.26 TCGA-A6-3809-01 14 100803435 100803437 GAA - WARS In_Frame_Del p.F406del 0.28 TCGA-A6-3809-01 14 102478363 102478363 A G DYNC1H1 Missense_Mutation p.K2257R 0.25 probably_damaging(0.942) TCGA-A6-3809-01 14 104263734 104263734 T C PPP1R13B Missense_Mutation p.H44R 0.06 deleterious(0) possibly_damaging(0.772) TCGA-A6-3809-01 14 104490941 104490941 C A TDRD9 Missense_Mutation p.P881H 0.28 deleterious(0) possibly_damaging(0.832) TCGA-A6-3809-01 14 104605615 104605615 C T KIF26A Missense_Mutation p.T93I 0.34 deleterious(0) possibly_damaging(0.694) TCGA-A6-3809-01 14 105241334 105241334 C T AKT1 Missense_Mutation p.V192M 0.23 deleterious(0) possibly_damaging(0.658) TCGA-A6-3809-01 14 105409428 105409428 G T AHNAK2 Silent p.S4120S 0.32 TCGA-A6-3809-01 14 105609209 105609209 G A JAG2 Silent p.D1180D 0.36 TCGA-A6-3809-01 14 106174413 106174413 G - IGHA1 Frame_Shift_Del p.R126Dfs*14 0.25 TCGA-A6-3809-01 14 20295898 20295898 C T OR4N2 Silent p.C97C 0.15 TCGA-A6-3809-01 14 20943189 20943189 G A PNP Intron 0.23 TCGA-A6-3809-01 14 21162173 21162173 G A ANG 3'UTR 0.27 TCGA-A6-3809-01 14 21460326 21460326 C T METTL17 Silent p.H136H 0.23 TCGA-A6-3809-01 14 21854089 21854089 T G CHD8 Missense_Mutation p.M2477L 0.10 tolerated_low_confidence(0.36) benign(0.008) TCGA-A6-3809-01 14 21883981 21883983 TCT - CHD8 In_Frame_Del p.E601del 0.31 TCGA-A6-3809-01 14 24535781 24535781 G A LRRC16B Missense_Mutation p.G1200R 0.33 deleterious(0.01) unknown(0) TCGA-A6-3809-01 14 24613225 24613225 G A PSME2 Missense_Mutation p.R171C 0.50 deleterious(0) benign(0.214) TCGA-A6-3809-01 14 27066719 27066719 T C NOVA1 5'UTR 0.31 TCGA-A6-3809-01 14 29238017 29238017 A - FOXG1 3'UTR 0.11 TCGA-A6-3809-01 14 31376175 31376175 T - STRN3 Frame_Shift_Del p.N599Ifs*42 0.25 TCGA-A6-3809-01 14 31592182 31592182 C T HECTD1 Missense_Mutation p.D1685N 0.22 tolerated(0.3) possibly_damaging(0.811) TCGA-A6-3809-01 14 35037140 35037140 T - SNX6 Frame_Shift_Del p.N346Ifs*30 0.16 TCGA-A6-3809-01 14 36064949 36064949 T - RALGAPA1 Frame_Shift_Del p.N1861Tfs*6 0.24 TCGA-A6-3809-01 14 36302258 36302258 T C BRMS1L Missense_Mutation p.L103S 0.28 deleterious(0) possibly_damaging(0.869) TCGA-A6-3809-01 14 38678537 38678537 C T SSTR1 5'UTR 0.14 TCGA-A6-3809-01 14 38679542 38679542 C T SSTR1 Silent p.S316S 0.20 TCGA-A6-3809-01 14 38724625 38724625 G A CLEC14A Silent p.A201A 0.32 TCGA-A6-3809-01 14 38724646 38724646 C A CLEC14A Silent p.A194A 0.37 TCGA-A6-3809-01 14 39746163 39746163 T A CTAGE5 Missense_Mutation p.M30K 0.22 deleterious(0.04) benign(0.25) TCGA-A6-3809-01 14 45414534 45414534 A - KLHL28 Frame_Shift_Del p.Y200Mfs*3 0.24 TCGA-A6-3809-01 14 45432819 45432819 C T FAM179B Silent p.L399L 0.17 TCGA-A6-3809-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.19 TCGA-A6-3809-01 14 47770670 47770670 G A MDGA2 Missense_Mutation p.R122W 0.19 deleterious(0) probably_damaging(0.95) TCGA-A6-3809-01 14 50581035 50581035 T C VCPKMT Missense_Mutation p.K180E 0.05 tolerated(0.38) benign(0.042) TCGA-A6-3809-01 14 51088617 51088617 G T ATL1 Missense_Mutation p.Q349H 0.28 tolerated(0.08) benign(0.048) TCGA-A6-3809-01 14 53184806 53184806 A - PSMC6 Frame_Shift_Del p.T195Hfs*16 0.20 TCGA-A6-3809-01 14 53540516 53540516 C T DDHD1 Missense_Mutation p.A447T 0.06 tolerated(0.51) benign(0.002) TCGA-A6-3809-01 14 58934609 58934609 A - KIAA0586 Frame_Shift_Del p.K859Rfs*14 0.26 TCGA-A6-3809-01 14 59951232 59951232 G T JKAMP 5'UTR 0.35 TCGA-A6-3809-01 14 63174949 63174949 G A KCNH5 Silent p.T748T 0.32 TCGA-A6-3809-01 14 65208044 65208044 C T PLEKHG3 Silent p.S547S 0.27 TCGA-A6-3809-01 14 68028976 68028976 G A PLEKHH1 Missense_Mutation p.G210S 0.27 tolerated_low_confidence(0.43) benign(0.002) TCGA-A6-3809-01 14 68260918 68260918 T C ZFYVE26 Missense_Mutation p.T791A 0.19 tolerated(0.19) possibly_damaging(0.847) TCGA-A6-3809-01 14 72941366 72941366 C T RGS6 Nonsense_Mutation p.R218* 0.32 TCGA-A6-3809-01 14 74186069 74186069 T - ELMSAN1 Frame_Shift_Del p.T1025Qfs*68 0.24 TCGA-A6-3809-01 14 77942003 77942003 C T ISM2 Missense_Mutation p.A551T 0.20 deleterious(0.04) probably_damaging(0.945) TCGA-A6-3809-01 14 78045449 78045449 A C SPTLC2 Missense_Mutation p.F111V 0.27 deleterious(0) benign(0.391) TCGA-A6-3809-01 14 79175608 79175608 C T NRXN3 Missense_Mutation p.R51W 0.36 deleterious(0) probably_damaging(0.994) TCGA-A6-3809-01 14 97027000 97027000 A C PAPOLA Missense_Mutation p.E673D 0.20 tolerated(0.49) benign(0.055) TCGA-A6-3809-01 14 99976549 99976549 G A CCNK Silent p.V391V 0.38 TCGA-A6-3809-01 15 101109454 101109454 T C LINS Missense_Mutation p.N755D 0.25 deleterious(0.02) benign(0.164) TCGA-A6-3809-01 15 102346398 102346398 A G OR4F6 Missense_Mutation p.Q159R 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-A6-3809-01 15 28525215 28525215 T - HERC2 Frame_Shift_Del p.S181Vfs*85 0.20 TCGA-A6-3809-01 15 30664369 30664369 G A CHRFAM7A Silent p.S168S 0.65 TCGA-A6-3809-01 15 34355489 34355489 C T CHRM5 Missense_Mutation p.P191S 0.42 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 15 35045232 35045232 C - GJD2 Frame_Shift_Del p.G138Afs*13 0.26 TCGA-A6-3809-01 15 40235602 40235602 A - EIF2AK4 Frame_Shift_Del p.N94Mfs*13 0.35 TCGA-A6-3809-01 15 40396448 40396448 G A BMF Missense_Mutation p.A129V 0.22 tolerated(0.48) possibly_damaging(0.811) TCGA-A6-3809-01 15 40648424 40648424 C - PHGR1 Frame_Shift_Del p.H59Tfs*49 0.36 TCGA-A6-3809-01 15 40683714 40683714 G A KNSTRN Missense_Mutation p.A236T 0.35 tolerated(0.3) benign(0.08) TCGA-A6-3809-01 15 41145782 41145782 G A SPINT1 Silent p.T233T 0.43 TCGA-A6-3809-01 15 41275070 41275072 GTT - INO80 In_Frame_Del p.N1481del 0.26 TCGA-A6-3809-01 15 41769460 41769460 G A RTF1 Missense_Mutation p.R553Q 0.32 deleterious(0.01) possibly_damaging(0.708) TCGA-A6-3809-01 15 43714161 43714161 C T TP53BP1 Missense_Mutation p.S1331N 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-A6-3809-01 15 43820920 43820920 G - MAP1A Frame_Shift_Del p.G2418Afs*36 0.16 TCGA-A6-3809-01 15 43931101 43931101 C T CATSPER2 Splice_Site p.X281_splice 0.22 TCGA-A6-3809-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.21 TCGA-A6-3809-01 15 45003812 45003812 G A B2M Splice_Site p.X23_splice 0.21 TCGA-A6-3809-01 15 45007903 45007903 A G B2M Intron 0.29 TCGA-A6-3809-01 15 45051968 45051968 C A TRIM69 Missense_Mutation p.L287M 0.30 deleterious(0.04) possibly_damaging(0.541) TCGA-A6-3809-01 15 45248935 45248935 G A C15orf43 Missense_Mutation p.G7S 0.20 deleterious(0.02) benign(0.328) TCGA-A6-3809-01 15 45436404 45436404 C T DUOX1 Silent p.L703L 0.40 TCGA-A6-3809-01 15 50223391 50223391 A G ATP8B4 Silent p.L523L 0.26 TCGA-A6-3809-01 15 50264888 50264888 C T ATP8B4 Silent p.T378T 0.25 TCGA-A6-3809-01 15 51795014 51795014 G A DMXL2 Missense_Mutation p.T994M 0.22 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 15 52676431 52676431 C T MYO5A Missense_Mutation p.R614Q 0.24 tolerated(0.49) possibly_damaging(0.756) TCGA-A6-3809-01 15 53081491 53081491 G C ONECUT1 Silent p.L197L 0.21 TCGA-A6-3809-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.24 TCGA-A6-3809-01 15 59964914 59964914 G A BNIP2 Missense_Mutation p.A287V 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-A6-3809-01 15 60297441 60297441 C T FOXB1 Silent p.C93C 0.23 TCGA-A6-3809-01 15 63966641 63966641 T A HERC1 Missense_Mutation p.R2582S 0.28 possibly_damaging(0.852) TCGA-A6-3809-01 15 64017496 64017496 T C HERC1 Missense_Mutation p.Q1188R 0.20 benign(0.001) TCGA-A6-3809-01 15 67496420 67496420 T C AAGAB Missense_Mutation p.N261S 0.36 tolerated(0.24) probably_damaging(0.999) TCGA-A6-3809-01 15 68624704 68624704 C T ITGA11 Missense_Mutation p.G513D 0.32 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 15 74743157 74743157 G A UBL7 Silent p.P172P 0.49 TCGA-A6-3809-01 15 76005079 76005079 C T CSPG4 Silent p.R6R 0.39 TCGA-A6-3809-01 15 76019856 76019856 C A ODF3L1 Missense_Mutation p.P267Q 0.30 deleterious(0) probably_damaging(0.964) TCGA-A6-3809-01 15 77323580 77323580 C T PSTPIP1 Silent p.H234H 0.38 TCGA-A6-3809-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.31 TCGA-A6-3809-01 15 81230139 81230139 G A KIAA1199 Missense_Mutation p.D1076N 0.27 tolerated(0.06) benign(0.152) TCGA-A6-3809-01 15 81633789 81633789 T G TMC3 Silent p.R596R 0.21 TCGA-A6-3809-01 15 82336616 82336616 G T MEX3B Silent p.R199R 0.21 TCGA-A6-3809-01 15 83673489 83673489 A T C15orf40 Intron 0.25 TCGA-A6-3809-01 15 83673689 83673689 C T C15orf40 Intron 0.25 TCGA-A6-3809-01 15 85382247 85382247 A G ALPK3 Missense_Mutation p.D316G 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-A6-3809-01 15 85669546 85669546 C T PDE8A Nonsense_Mutation p.R732* 0.36 TCGA-A6-3809-01 15 89182779 89182779 C A ISG20 Missense_Mutation p.P61H 0.29 tolerated(0.08) benign(0.055) TCGA-A6-3809-01 15 90196044 90196044 C T KIF7 Missense_Mutation p.V40M 0.21 deleterious(0.01) probably_damaging(0.937) TCGA-A6-3809-01 15 91420762 91420762 G A FURIN Missense_Mutation p.G195D 0.40 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 15 92647702 92647702 G T SLCO3A1 Missense_Mutation p.K313N 0.15 tolerated(0.19) benign(0.412) TCGA-A6-3809-01 15 96869379 96869379 G A NR2F2 5'Flank 0.20 TCGA-A6-3809-01 15 98984357 98984357 A G FAM169B Silent p.H134H 0.32 TCGA-A6-3809-01 15 99759219 99759219 T - TTC23 Frame_Shift_Del p.A114Pfs*47 0.20 TCGA-A6-3809-01 16 11004099 11004099 A - CIITA Frame_Shift_Del p.K958Rfs*37 0.26 TCGA-A6-3809-01 16 113033 113033 G A RHBDF1 Missense_Mutation p.R204W 0.33 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 16 11367347 11367347 T C PRM3 Missense_Mutation p.M36V 0.20 tolerated_low_confidence(1) benign(0) TCGA-A6-3809-01 16 11785384 11785386 CTC - TXNDC11 In_Frame_Del p.E554del 0.29 TCGA-A6-3809-01 16 12136922 12136922 G A SNX29 Missense_Mutation p.R139H 0.27 tolerated(0.12) benign(0.001) TCGA-A6-3809-01 16 1270436 1270436 G A CACNA1H Silent p.A2168A 0.42 TCGA-A6-3809-01 16 1307043 1307043 G - TPSD1 Frame_Shift_Del p.G168Afs*15 0.26 TCGA-A6-3809-01 16 13297387 13297387 C T SHISA9 Silent p.Y276Y 0.17 TCGA-A6-3809-01 16 1399264 1399264 C T TSR3 3'UTR 0.24 TCGA-A6-3809-01 16 15224981 15224981 G A RP11-1186N24.5 RNA 0.36 TCGA-A6-3809-01 16 15758613 15758613 T C NDE1 5'UTR 0.18 TCGA-A6-3809-01 16 1818949 1818949 A G MAPK8IP3 3'UTR 0.25 TCGA-A6-3809-01 16 1827140 1827140 G A SPSB3 Silent p.R342R 0.40 TCGA-A6-3809-01 16 20331766 20331766 A C GP2 Missense_Mutation p.C229G 0.30 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 16 2049581 2049581 G T ZNF598 Missense_Mutation p.L657M 0.30 benign(0.193) TCGA-A6-3809-01 16 2165390 2165391 - G PKD1 Frame_Shift_Ins p.A696Rfs*18 0.16 TCGA-A6-3809-01 16 21721276 21721276 C A OTOA Nonsense_Mutation p.S391* 0.15 TCGA-A6-3809-01 16 22448665 22448665 C A RRN3P3 RNA 0.29 TCGA-A6-3809-01 16 22826286 22826286 A G HS3ST2 Missense_Mutation p.I119V 0.29 tolerated(0.05) benign(0.343) TCGA-A6-3809-01 16 23541185 23541185 G A EARS2 Silent p.S367S 0.12 TCGA-A6-3809-01 16 23669886 23669886 G A DCTN5 Missense_Mutation p.R59H 0.24 deleterious(0) probably_damaging(0.957) TCGA-A6-3809-01 16 24580822 24580822 A - RBBP6 Frame_Shift_Del p.R939Efs*11 0.20 TCGA-A6-3809-01 16 27483197 27483197 C A GTF3C1 Missense_Mutation p.K1466N 0.19 deleterious(0) possibly_damaging(0.791) TCGA-A6-3809-01 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.18 TCGA-A6-3809-01 16 2818173 2818173 G A SRRM2 Silent p.S2548S 0.07 TCGA-A6-3809-01 16 28913640 28913640 C - ATP2A1 Frame_Shift_Del p.R822Gfs*49 0.31 TCGA-A6-3809-01 16 29857518 29857518 C T MVP Silent p.A726A 0.24 TCGA-A6-3809-01 16 30097898 30097898 G - TBX6 Frame_Shift_Del p.S345Vfs*153 0.16 TCGA-A6-3809-01 16 3019806 3019806 A G PAQR4 Missense_Mutation p.Y44C 0.23 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 16 3021117 3021117 G A PAQR4 Intron 0.18 TCGA-A6-3809-01 16 30369283 30369283 C T TBC1D10B Silent p.R803R 0.37 TCGA-A6-3809-01 16 30581350 30581351 - C ZNF688 Frame_Shift_Ins p.R240Afs*19 0.24 TCGA-A6-3809-01 16 30980690 30980690 C T SETD1A Silent p.D945D 0.21 TCGA-A6-3809-01 16 31230708 31230708 G T TRIM72 Missense_Mutation p.E195D 0.33 tolerated(0.11) benign(0.012) TCGA-A6-3809-01 16 31235650 31235650 G A TRIM72 Silent p.A336A 0.20 TCGA-A6-3809-01 16 3434512 3434512 G T ZSCAN32 Missense_Mutation p.P182H 0.33 tolerated(0.12) benign(0.425) TCGA-A6-3809-01 16 3817721 3817721 T - CREBBP Frame_Shift_Del p.I1084Sfs*15 0.18 TCGA-A6-3809-01 16 4409578 4409578 G A CORO7 Missense_Mutation p.A718V 0.37 deleterious(0.01) benign(0.22) TCGA-A6-3809-01 16 48278404 48278404 G T LONP2 Silent p.S35S 0.11 TCGA-A6-3809-01 16 4924552 4924552 A - UBN1 Frame_Shift_Del p.R716Gfs*129 0.17 TCGA-A6-3809-01 16 4941812 4941812 C T PPL Silent p.A656A 0.30 TCGA-A6-3809-01 16 50745399 50745399 C - NOD2 Frame_Shift_Del p.P528Qfs*235 0.27 TCGA-A6-3809-01 16 51174451 51174451 G - SALL1 Frame_Shift_Del p.P561Qfs*45 0.19 TCGA-A6-3809-01 16 53488686 53488686 G A RBL2 Missense_Mutation p.A371T 0.36 tolerated(0.6) benign(0.001) TCGA-A6-3809-01 16 54319068 54319068 C - IRX3 Frame_Shift_Del p.G242Afs*18 0.23 TCGA-A6-3809-01 16 56226033 56226033 A G GNAO1 5'UTR 0.30 TCGA-A6-3809-01 16 56309890 56309890 A C GNAO1 Missense_Mutation p.K70T 0.30 tolerated(0.07) possibly_damaging(0.9) TCGA-A6-3809-01 16 57070019 57070019 G T NLRC5 Missense_Mutation p.G879W 0.31 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 16 57111878 57111878 A G NLRC5 Missense_Mutation p.D1676G 0.20 deleterious(0.04) probably_damaging(0.938) TCGA-A6-3809-01 16 57279999 57279999 G A ARL2BP Missense_Mutation p.A16T 0.29 tolerated(0.6) unknown(0) TCGA-A6-3809-01 16 57804500 57804500 A C KIFC3 Missense_Mutation p.L293R 0.29 deleterious(0.03) probably_damaging(0.984) TCGA-A6-3809-01 16 57993897 57993897 A G CNGB1 Missense_Mutation p.I219T 0.27 tolerated_low_confidence(0.62) benign(0.001) TCGA-A6-3809-01 16 58030815 58030815 G A ZNF319 Missense_Mutation p.A452V 0.27 tolerated_low_confidence(0.23) benign(0.314) TCGA-A6-3809-01 16 58076237 58076237 T C MMP15 Missense_Mutation p.Y423H 0.32 deleterious(0) probably_damaging(0.97) TCGA-A6-3809-01 16 58231594 58231594 A G CSNK2A2 Missense_Mutation p.V16A 0.19 tolerated(0.28) benign(0.031) TCGA-A6-3809-01 16 58438634 58438634 A G GINS3 3'UTR 0.28 TCGA-A6-3809-01 16 58538312 58538312 G T NDRG4 Missense_Mutation p.V152L 0.13 tolerated(1) benign(0.003) TCGA-A6-3809-01 16 597928 597928 G A CAPN15 Missense_Mutation p.G364S 0.19 deleterious(0.03) probably_damaging(0.988) TCGA-A6-3809-01 16 65022215 65022215 C T CDH11 Missense_Mutation p.V282I 0.30 deleterious(0.03) benign(0.004) TCGA-A6-3809-01 16 66759828 66759828 C T DYNC1LI2 Silent p.G427G 0.08 TCGA-A6-3809-01 16 66976145 66976145 T - CES2 Frame_Shift_Del p.Q491Sfs*27 0.17 TCGA-A6-3809-01 16 67299010 67299010 G A SLC9A5 Splice_Site p.X694_splice 0.34 TCGA-A6-3809-01 16 67335748 67335748 T C KCTD19 Missense_Mutation p.I241V 0.25 tolerated(0.06) benign(0.034) TCGA-A6-3809-01 16 67418905 67418905 G A LRRC36 Silent p.T726T 0.25 TCGA-A6-3809-01 16 68056750 68056750 A G DDX28 Missense_Mutation p.V119A 0.11 tolerated(0.11) benign(0.013) TCGA-A6-3809-01 16 68598463 68598463 A - ZFP90 Frame_Shift_Del p.T594Pfs*57 0.29 TCGA-A6-3809-01 16 705906 705906 G A WDR90 Intron 0.60 TCGA-A6-3809-01 16 70814765 70814765 G A VAC14 Silent p.L342L 0.32 TCGA-A6-3809-01 16 709288 709288 C T WDR90 Silent p.S1032S 0.32 TCGA-A6-3809-01 16 71094517 71094517 C T HYDIN Missense_Mutation p.V807I 0.24 benign(0.005) TCGA-A6-3809-01 16 72992704 72992704 G A ZFHX3 Silent p.G447G 0.12 TCGA-A6-3809-01 16 739396 739396 C T WDR24 Nonsense_Mutation p.W82* 0.25 TCGA-A6-3809-01 16 74302 74302 C A WASH4P 5'Flank 0.43 TCGA-A6-3809-01 16 74528665 74528665 C T GLG1 Missense_Mutation p.S348N 0.21 deleterious(0) probably_damaging(0.929) TCGA-A6-3809-01 16 75512696 75512696 C T CHST6 Missense_Mutation p.R344H 0.31 deleterious(0.02) benign(0.051) TCGA-A6-3809-01 16 75642858 75642859 - T ADAT1 Frame_Shift_Ins p.G358Rfs*17 0.09 TCGA-A6-3809-01 16 772554 772554 C A FAM173A Missense_Mutation p.S235R 0.58 tolerated_low_confidence(0.05) unknown(0) TCGA-A6-3809-01 16 77910280 77910280 G T VAT1L Missense_Mutation p.G246C 0.19 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 16 78064514 78064514 G T CLEC3A Missense_Mutation p.G133C 0.06 deleterious(0.02) probably_damaging(0.971) TCGA-A6-3809-01 16 81969922 81969922 C T PLCG2 Silent p.Y997Y 0.24 TCGA-A6-3809-01 16 83948790 83948790 C T MLYCD Missense_Mutation p.A393V 0.31 tolerated(0.69) benign(0.009) TCGA-A6-3809-01 16 83999196 83999196 G A OSGIN1 Missense_Mutation p.V340M 0.24 deleterious(0) probably_damaging(0.982) TCGA-A6-3809-01 16 84132769 84132769 T C MBTPS1 Missense_Mutation p.I104V 0.29 tolerated(1) benign(0.001) TCGA-A6-3809-01 16 86614474 86614474 G - FOXL1 3'UTR 0.13 TCGA-A6-3809-01 16 87417048 87417048 G A FBXO31 Silent p.L101L 0.34 TCGA-A6-3809-01 16 87764176 87764176 C A KLHDC4 Missense_Mutation p.G194V 0.25 deleterious(0) probably_damaging(0.987) TCGA-A6-3809-01 16 88496011 88496011 G A ZNF469 Silent p.P711P 0.25 TCGA-A6-3809-01 16 88501272 88501272 G A ZNF469 Missense_Mutation p.G2437D 0.07 benign(0.001) TCGA-A6-3809-01 16 88504203 88504203 G - ZNF469 Frame_Shift_Del p.R3417Gfs*56 0.20 TCGA-A6-3809-01 16 89341535 89341535 C T ANKRD11 Missense_Mutation p.R2512Q 0.25 probably_damaging(0.997) TCGA-A6-3809-01 16 89348044 89348044 C T ANKRD11 Missense_Mutation p.D1636N 0.34 probably_damaging(0.962) TCGA-A6-3809-01 16 89804088 89804088 G A FANCA 3'UTR 0.29 TCGA-A6-3809-01 16 90162645 90162645 T C TUBB8P7 RNA 0.24 TCGA-A6-3809-01 16 9210752 9210752 C T C16orf72 Missense_Mutation p.R271C 0.35 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 17 10298454 10298454 A G MYH8 Missense_Mutation p.L1653P 0.33 deleterious(0) probably_damaging(0.936) TCGA-A6-3809-01 17 10402110 10402110 C G MYH1 Missense_Mutation p.Q1338H 0.15 deleterious(0) possibly_damaging(0.786) TCGA-A6-3809-01 17 10534928 10534928 G A MYH3 Silent p.D1762D 0.31 TCGA-A6-3809-01 17 1518317 1518317 G A SLC43A2 Missense_Mutation p.A127V 0.37 deleterious(0.03) possibly_damaging(0.795) TCGA-A6-3809-01 17 16004884 16004884 A G NCOR1 Silent p.A790A 0.10 TCGA-A6-3809-01 17 16612529 16612529 T C CCDC144A Silent p.H386H 0.05 TCGA-A6-3809-01 17 1674431 1674431 C - SERPINF1 Frame_Shift_Del p.Q133Rfs*18 0.25 TCGA-A6-3809-01 17 17697720 17697720 C T RAI1 Silent p.S486S 0.28 TCGA-A6-3809-01 17 18167248 18167248 G - MIEF2 Frame_Shift_Del p.P192Rfs*98 0.45 TCGA-A6-3809-01 17 18226123 18226123 C T SMCR8 Silent p.L851L 0.19 TCGA-A6-3809-01 17 18918483 18918483 C T SLC5A10 Silent p.S420S 0.32 TCGA-A6-3809-01 17 19232165 19232165 G A EPN2 Missense_Mutation p.G430D 0.33 deleterious(0.02) benign(0.002) TCGA-A6-3809-01 17 19684370 19684370 G A ULK2 Missense_Mutation p.A896V 0.39 deleterious(0) benign(0.413) TCGA-A6-3809-01 17 26084369 26084369 C T NOS2 Missense_Mutation p.R1122H 0.34 deleterious(0) possibly_damaging(0.902) TCGA-A6-3809-01 17 26574561 26574561 C T CTD-2008P7.8 RNA 0.30 TCGA-A6-3809-01 17 27042094 27042094 G T RAB34 Missense_Mutation p.A244D 0.19 deleterious(0) probably_damaging(0.967) TCGA-A6-3809-01 17 27425426 27425426 G A MYO18A Missense_Mutation p.A1273V 0.13 tolerated(1) benign(0) TCGA-A6-3809-01 17 27975194 27975194 T C SSH2 Silent p.Q438Q 0.29 TCGA-A6-3809-01 17 30221679 30221679 G T UTP6 Silent p.A99A 0.09 TCGA-A6-3809-01 17 31348259 31348259 C T ASIC2 Silent p.A473A 0.22 TCGA-A6-3809-01 17 32906182 32906182 C T C17orf102 Missense_Mutation p.A40T 0.34 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-A6-3809-01 17 33290163 33290163 T - ZNF830 3'UTR 0.19 TCGA-A6-3809-01 17 33329032 33329032 A G LIG3 Silent p.S861S 0.37 TCGA-A6-3809-01 17 33428020 33428020 G T RAD51D Silent p.T333T 0.17 TCGA-A6-3809-01 17 33520594 33520594 C T SLC35G3 Missense_Mutation p.V245M 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-A6-3809-01 17 33880057 33880057 G T SLFN14 Silent p.S532S 0.20 TCGA-A6-3809-01 17 3402358 3402358 A C ASPA Missense_Mutation p.K306N 0.04 tolerated(0.26) benign(0.001) TCGA-A6-3809-01 17 34165493 34165493 G - TAF15 Frame_Shift_Del p.E285Rfs*41 0.17 TCGA-A6-3809-01 17 36499251 36499251 T A GPR179 Missense_Mutation p.D141V 0.07 deleterious(0) probably_damaging(0.991) TCGA-A6-3809-01 17 36997509 36997509 G A C17orf98 Missense_Mutation p.A45V 0.34 deleterious(0.01) possibly_damaging(0.802) TCGA-A6-3809-01 17 37075075 37075075 G A LASP1 3'UTR 0.33 TCGA-A6-3809-01 17 38122611 38122611 G A GSDMA Missense_Mutation p.A105T 0.04 tolerated(0.08) possibly_damaging(0.886) TCGA-A6-3809-01 17 38146021 38146021 C T PSMD3 Missense_Mutation p.T239M 0.26 deleterious(0) possibly_damaging(0.9) TCGA-A6-3809-01 17 3840876 3840876 C T ATP2A3 Missense_Mutation p.A719T 0.21 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 17 38552642 38552642 T - TOP2A Frame_Shift_Del p.T1205Hfs*19 0.34 TCGA-A6-3809-01 17 38975821 38975821 G A KRT10 Nonsense_Mutation p.R441* 0.22 TCGA-A6-3809-01 17 39261963 39261963 G A KRTAP4-9 Missense_Mutation p.S108N 0.28 deleterious(0.02) unknown(0) TCGA-A6-3809-01 17 39661415 39661415 C T KRT13 Missense_Mutation p.A130T 0.24 tolerated(0.73) benign(0.106) TCGA-A6-3809-01 17 39887960 39887960 C T HAP1 Missense_Mutation p.C311Y 0.33 tolerated(0.09) possibly_damaging(0.588) TCGA-A6-3809-01 17 41584488 41584488 A G DHX8 Missense_Mutation p.T616A 0.10 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 17 42937287 42937287 A G EFTUD2 Missense_Mutation p.S616P 0.19 deleterious(0.01) benign(0.158) TCGA-A6-3809-01 17 43246589 43246589 C T HEXIM2 Missense_Mutation p.R92C 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 17 43516976 43516976 A G PLEKHM1 Missense_Mutation p.F976L 0.15 deleterious(0.03) benign(0.036) TCGA-A6-3809-01 17 4458441 4458441 T C MYBBP1A Missense_Mutation p.Y60C 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-A6-3809-01 17 45820027 45820027 C T TBX21 Silent p.S181S 0.38 TCGA-A6-3809-01 17 46002416 46002416 C T SP2 Missense_Mutation p.R502C 0.31 deleterious(0) benign(0.072) TCGA-A6-3809-01 17 46103763 46103764 - G COPZ2 3'UTR 0.24 TCGA-A6-3809-01 17 46262210 46262210 C T SKAP1 Splice_Site p.X148_splice 0.33 TCGA-A6-3809-01 17 4719179 4719179 C T PLD2 Missense_Mutation p.H469Y 0.26 deleterious(0.01) benign(0.065) TCGA-A6-3809-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.37 TCGA-A6-3809-01 17 48628959 48628959 T C SPATA20 Missense_Mutation p.L555P 0.26 deleterious(0) probably_damaging(0.976) TCGA-A6-3809-01 17 5042875 5042875 C - USP6 Frame_Shift_Del p.H470Ifs*36 0.23 TCGA-A6-3809-01 17 5087519 5087519 A G ZNF594 Silent p.S11S 0.11 TCGA-A6-3809-01 17 56274542 56274542 G A EPX Silent p.L348L 0.30 TCGA-A6-3809-01 17 56350230 56350230 C T MPO Silent p.L557L 0.33 TCGA-A6-3809-01 17 56386564 56386564 G T BZRAP1 Missense_Mutation p.P1357T 0.15 tolerated(0.09) benign(0.014) TCGA-A6-3809-01 17 56581778 56581778 T G MTMR4 Missense_Mutation p.Q457H 0.32 deleterious(0.05) benign(0.071) TCGA-A6-3809-01 17 60526216 60526216 A G METTL2A 3'UTR 0.28 TCGA-A6-3809-01 17 60742249 60742249 C A MRC2 Silent p.T153T 0.33 TCGA-A6-3809-01 17 61958293 61958293 G T GH2 Missense_Mutation p.L99I 0.29 tolerated(0.08) possibly_damaging(0.893) TCGA-A6-3809-01 17 62045682 62045682 G A SCN4A Missense_Mutation p.S246L 0.38 deleterious(0) probably_damaging(0.989) TCGA-A6-3809-01 17 62084089 62084089 G T ICAM2 5'UTR 0.28 TCGA-A6-3809-01 17 62121443 62121443 C G ERN1 Missense_Mutation p.A947P 0.27 deleterious(0) probably_damaging(0.976) TCGA-A6-3809-01 17 62492929 62492929 T C POLG2 Missense_Mutation p.N53S 0.17 tolerated_low_confidence(0.08) benign(0.004) TCGA-A6-3809-01 17 6360997 6360997 A G PITPNM3 Missense_Mutation p.S846P 0.23 deleterious(0.03) benign(0.363) TCGA-A6-3809-01 17 66864183 66864183 A - ABCA8 3'UTR 0.25 TCGA-A6-3809-01 17 68128270 68128270 C T KCNJ16 Silent p.D14D 0.27 TCGA-A6-3809-01 17 68173879 68173879 T - KCNJ2 3'UTR 0.19 TCGA-A6-3809-01 17 70117890 70117890 C T SOX9 Missense_Mutation p.R120C 0.19 deleterious(0) possibly_damaging(0.88) TCGA-A6-3809-01 17 71411954 71411954 C A SDK2 Missense_Mutation p.Q788H 0.27 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 17 71427712 71427712 G A SDK2 Missense_Mutation p.A470V 0.21 deleterious(0.02) possibly_damaging(0.804) TCGA-A6-3809-01 17 7216368 7216368 G A GPS2 Nonsense_Mutation p.Q294* 0.33 TCGA-A6-3809-01 17 7216579 7216579 C G GPS2 Missense_Mutation p.L252F 0.35 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-A6-3809-01 17 7229026 7229026 C A NEURL4 Missense_Mutation p.D434Y 0.37 deleterious(0) probably_damaging(0.986) TCGA-A6-3809-01 17 72295967 72295967 G A DNAI2 Missense_Mutation p.E279K 0.31 deleterious(0) possibly_damaging(0.907) TCGA-A6-3809-01 17 72338116 72338116 C T KIF19 Silent p.T74T 0.26 TCGA-A6-3809-01 17 72348166 72348166 C T AC103809.2 Missense_Mutation p.A36T 0.29 possibly_damaging(0.691) TCGA-A6-3809-01 17 72541937 72541937 G A CD300C 5'UTR 0.24 TCGA-A6-3809-01 17 72868977 72868977 C G FDXR Intron 0.24 TCGA-A6-3809-01 17 73499796 73499798 TCT - CASKIN2 In_Frame_Del p.K541del 0.18 TCGA-A6-3809-01 17 73559224 73559224 G A LLGL2 Missense_Mutation p.G220S 0.34 tolerated(0.96) benign(0.004) TCGA-A6-3809-01 17 73643521 73643522 - G SMIM6 Frame_Shift_Ins p.L25Pfs*33 0.12 TCGA-A6-3809-01 17 73738455 73738455 G T ITGB4 Missense_Mutation p.M889I 0.11 tolerated(0.29) benign(0.01) TCGA-A6-3809-01 17 74003874 74003874 C T EVPL Silent p.P1804P 0.50 TCGA-A6-3809-01 17 74393947 74393947 C T UBE2O Missense_Mutation p.R683H 0.41 tolerated(0.07) probably_damaging(0.991) TCGA-A6-3809-01 17 74396331 74396331 T C UBE2O Missense_Mutation p.E351G 0.34 deleterious(0) possibly_damaging(0.631) TCGA-A6-3809-01 17 74774351 74774351 T - MFSD11 Frame_Shift_Del p.F424Lfs*17 0.16 TCGA-A6-3809-01 17 74865044 74865044 G A MGAT5B 5'Flank 0.15 TCGA-A6-3809-01 17 76063987 76063987 A - TNRC6C Frame_Shift_Del p.G920Dfs*6 0.31 TCGA-A6-3809-01 17 7643821 7643821 A G DNAH2 Missense_Mutation p.H487R 0.41 benign(0.003) TCGA-A6-3809-01 17 77015576 77015576 C A C1QTNF1-AS1 3'UTR 0.25 TCGA-A6-3809-01 17 77079993 77079993 C A ENGASE Silent p.R468R 0.39 TCGA-A6-3809-01 17 77086915 77086916 - T RBFOX3 3'UTR 0.20 TCGA-A6-3809-01 17 7721317 7721317 C T DNAH2 Silent p.H3430H 0.16 TCGA-A6-3809-01 17 7752884 7752884 G A KDM6B Missense_Mutation p.R1093H 0.16 benign(0.103) TCGA-A6-3809-01 17 78071103 78071103 C T CCDC40 Silent p.S1027S 0.23 TCGA-A6-3809-01 17 79095894 79095894 C T AATK Silent p.A614A 0.24 TCGA-A6-3809-01 17 79409705 79409705 C A RP11-1055B8.7 Missense_Mutation p.L444M 0.34 benign(0.177) TCGA-A6-3809-01 17 79409901 79409901 A G RP11-1055B8.7 Missense_Mutation p.Q509R 0.29 possibly_damaging(0.461) TCGA-A6-3809-01 17 79508358 79508358 G A C17orf70 Missense_Mutation p.R831C 0.33 deleterious(0) probably_damaging(0.959) TCGA-A6-3809-01 17 80039938 80039938 G A FASN Missense_Mutation p.A2037V 0.35 deleterious(0) probably_damaging(0.962) TCGA-A6-3809-01 17 80042404 80042404 G T FASN Missense_Mutation p.P1585T 0.23 deleterious(0.01) possibly_damaging(0.901) TCGA-A6-3809-01 17 80048925 80048925 C T FASN Missense_Mutation p.G505R 0.27 deleterious(0.03) possibly_damaging(0.58) TCGA-A6-3809-01 17 80115556 80115556 G A CCDC57 3'UTR 0.62 TCGA-A6-3809-01 17 80195347 80195347 C T SLC16A3 Missense_Mutation p.A234V 0.33 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 17 80332462 80332462 G A UTS2R Missense_Mutation p.V88I 0.25 tolerated(0.58) benign(0.044) TCGA-A6-3809-01 17 80542063 80542063 A G FOXK2 Silent p.P426P 0.31 TCGA-A6-3809-01 17 8092287 8092287 T G C17orf59 3'UTR 0.32 TCGA-A6-3809-01 17 962059 962061 TCT - ABR In_Frame_Del p.K410del 0.27 TCGA-A6-3809-01 17 9676219 9676219 C A DHRS7C Missense_Mutation p.A199S 0.22 deleterious(0.03) possibly_damaging(0.751) TCGA-A6-3809-01 18 13068879 13068879 G A CEP192 Silent p.S1617S 0.31 TCGA-A6-3809-01 18 14478662 14478662 T - CXADRP3 RNA 0.20 TCGA-A6-3809-01 18 19070239 19070239 A G GREB1L Missense_Mutation p.Y986C 0.39 tolerated(0.14) probably_damaging(0.987) TCGA-A6-3809-01 18 19154750 19154750 T - ESCO1 Frame_Shift_Del p.S19Vfs*17 0.22 TCGA-A6-3809-01 18 21269908 21269908 C - LAMA3 Frame_Shift_Del p.T89Pfs*69 0.17 TCGA-A6-3809-01 18 21470068 21470068 T C LAMA3 Silent p.H1799H 0.05 TCGA-A6-3809-01 18 22056924 22056924 G A HRH4 Missense_Mutation p.A191T 0.23 tolerated(0.93) benign(0.079) TCGA-A6-3809-01 18 28602393 28602393 A C DSC3 Missense_Mutation p.I284S 0.30 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 18 28671093 28671093 A G DSC2 Silent p.H124H 0.27 TCGA-A6-3809-01 18 31463227 31463227 C A NOL4 Silent p.L568L 0.24 TCGA-A6-3809-01 18 34647211 34647211 C T KIAA1328 Missense_Mutation p.A312V 0.28 tolerated(0.21) benign(0.009) TCGA-A6-3809-01 18 3534467 3534467 C T DLGAP1 Missense_Mutation p.S735N 0.25 tolerated(0.08) benign(0.032) TCGA-A6-3809-01 18 42530320 42530320 A - SETBP1 Frame_Shift_Del p.D341Mfs*2 0.25 TCGA-A6-3809-01 18 43842897 43842897 T C C18orf25 Missense_Mutation p.V343A 0.32 benign(0.001) TCGA-A6-3809-01 18 44561595 44561595 A C TCEB3B Missense_Mutation p.L14R 0.08 deleterious(0) probably_damaging(0.991) TCGA-A6-3809-01 18 47511176 47511177 - A MYO5B Frame_Shift_Ins p.Y287Lfs*17 0.23 TCGA-A6-3809-01 18 48452176 48452176 G A ME2 Missense_Mutation p.A408T 0.05 deleterious(0.05) possibly_damaging(0.883) TCGA-A6-3809-01 18 48604826 48604826 C A SMAD4 Missense_Mutation p.P550T 0.24 deleterious_low_confidence(0.02) benign(0.004) TCGA-A6-3809-01 18 55103553 55103553 G A ONECUT2 Missense_Mutation p.R202H 0.42 deleterious(0.01) probably_damaging(0.951) TCGA-A6-3809-01 18 56202934 56202934 C T ALPK2 Silent p.L1495L 0.33 TCGA-A6-3809-01 18 58039860 58039860 C T MC4R 5'UTR 0.23 TCGA-A6-3809-01 18 59821802 59821802 A G PIGN Silent p.D175D 0.22 TCGA-A6-3809-01 18 67993795 67993795 C - SOCS6 3'UTR 0.35 TCGA-A6-3809-01 18 70450956 70450956 A C NETO1 Missense_Mutation p.S275R 0.31 deleterious(0.03) probably_damaging(0.959) TCGA-A6-3809-01 18 7231580 7231580 G A LRRC30 Silent p.S148S 0.23 TCGA-A6-3809-01 18 73001508 73001508 A - TSHZ1 3'UTR 0.19 TCGA-A6-3809-01 18 74692224 74692224 C T RP11-862L9.3 5'Flank 0.13 TCGA-A6-3809-01 18 76753206 76753206 G A SALL3 Silent p.S405S 0.30 TCGA-A6-3809-01 18 77089290 77089290 C T ATP9B Silent p.G641G 0.39 TCGA-A6-3809-01 19 1005043 1005043 G A GRIN3B Missense_Mutation p.G515S 0.38 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 19 10506624 10506624 T C CDC37 Missense_Mutation p.S120G 0.26 tolerated(0.07) possibly_damaging(0.869) TCGA-A6-3809-01 19 11348162 11348162 C T DOCK6 Silent p.P681P 0.25 TCGA-A6-3809-01 19 11363560 11363560 G A DOCK6 Silent p.P69P 0.26 TCGA-A6-3809-01 19 11411845 11411845 G T TSPAN16 Intron 0.23 TCGA-A6-3809-01 19 11594464 11594464 C T ZNF653 3'UTR 0.28 TCGA-A6-3809-01 19 11597655 11597655 C A ZNF653 Missense_Mutation p.G462C 0.31 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 19 12128744 12128744 T - ZNF433 Frame_Shift_Del p.K49Nfs*9 0.19 TCGA-A6-3809-01 19 1221313 1221314 - C STK11 Frame_Shift_Ins p.L282Afs*3 0.16 TCGA-A6-3809-01 19 1236091 1236091 G A C19orf26 Silent p.P3P 0.38 TCGA-A6-3809-01 19 12383929 12383929 G A ZNF44 Nonsense_Mutation p.R429* 0.37 TCGA-A6-3809-01 19 12969533 12969533 T C MAST1 Missense_Mutation p.M449T 0.14 deleterious(0) possibly_damaging(0.497) TCGA-A6-3809-01 19 14024336 14024336 C A CC2D1A Silent p.P211P 0.05 TCGA-A6-3809-01 19 14167494 14167494 G A PALM3 Silent p.N83N 0.35 TCGA-A6-3809-01 19 14273810 14273810 T C LPHN1 Missense_Mutation p.D273G 0.32 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 19 1455174 1455176 AGG - APC2 In_Frame_Del p.E149del 0.28 TCGA-A6-3809-01 19 14574666 14574666 A T PKN1 Missense_Mutation p.M514L 0.40 tolerated(0.05) benign(0.046) TCGA-A6-3809-01 19 1466524 1466524 C T APC2 Missense_Mutation p.S1075L 0.35 probably_damaging(1) TCGA-A6-3809-01 19 1487277 1487277 T C PCSK4 Missense_Mutation p.I240V 0.26 tolerated(1) benign(0.013) TCGA-A6-3809-01 19 15079250 15079250 G A SLC1A6 Missense_Mutation p.T138I 0.37 deleterious(0.03) benign(0.005) TCGA-A6-3809-01 19 1508555 1508555 C T ADAMTSL5 Missense_Mutation p.D126N 0.46 deleterious(0) probably_damaging(0.936) TCGA-A6-3809-01 19 15536296 15536296 C T WIZ Silent p.P455P 0.30 TCGA-A6-3809-01 19 16275665 16275665 T C CIB3 Missense_Mutation p.T136A 0.12 deleterious(0.01) possibly_damaging(0.89) TCGA-A6-3809-01 19 16317175 16317175 G A AP1M1 Missense_Mutation p.A75T 0.24 tolerated(0.38) benign(0.119) TCGA-A6-3809-01 19 16611629 16611629 G A C19orf44 Missense_Mutation p.R9H 0.30 tolerated(0.67) benign(0.003) TCGA-A6-3809-01 19 16982128 16982128 G T SIN3B Missense_Mutation p.E869D 0.22 deleterious(0) probably_damaging(0.983) TCGA-A6-3809-01 19 17104251 17104251 G A CPAMD8 Missense_Mutation p.T461M 0.29 tolerated(0.24) benign(0.143) TCGA-A6-3809-01 19 17838103 17838103 G A MAP1S Missense_Mutation p.R637H 0.50 tolerated(0.14) benign(0.001) TCGA-A6-3809-01 19 1796260 1796260 C T ATP8B3 Silent p.Q586Q 0.26 TCGA-A6-3809-01 19 18368675 18368676 - C KIAA1683 Frame_Shift_Ins p.A1140Gfs*64 0.25 TCGA-A6-3809-01 19 18377543 18377543 G T KIAA1683 Silent p.T269T 0.07 TCGA-A6-3809-01 19 18546988 18546988 T C ISYNA1 Missense_Mutation p.N277D 0.47 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 19 18642956 18642956 G - FKBP8 3'UTR 0.26 TCGA-A6-3809-01 19 19625477 19625477 C A TSSK6 Missense_Mutation p.A254S 0.25 tolerated(1) benign(0.007) TCGA-A6-3809-01 19 1979174 1979174 G A CSNK1G2 Missense_Mutation p.R232H 0.38 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 19 20236361 20236361 A - CTC-260E6.2 3'Flank 0.35 TCGA-A6-3809-01 19 2114292 2114292 G A AP3D1 Silent p.A811A 0.37 TCGA-A6-3809-01 19 21324991 21324991 T C ZNF431 Splice_Site p.X1_splice 0.25 TCGA-A6-3809-01 19 21365948 21365948 T G ZNF431 Missense_Mutation p.I281S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-A6-3809-01 19 22574489 22574489 T G ZNF98 Missense_Mutation p.K516N 0.06 deleterious(0.02) probably_damaging(0.989) TCGA-A6-3809-01 19 23836991 23836991 T - ZNF675 Frame_Shift_Del p.D249Ifs*28 0.25 TCGA-A6-3809-01 19 29698750 29698750 C T UQCRFS1 Missense_Mutation p.R177H 0.18 deleterious(0.02) probably_damaging(1) TCGA-A6-3809-01 19 30165449 30165449 G A PLEKHF1 Missense_Mutation p.A235T 0.29 tolerated(0.57) benign(0.001) TCGA-A6-3809-01 19 30205863 30205863 A G C19orf12 5'UTR 0.19 TCGA-A6-3809-01 19 31039818 31039818 G A ZNF536 Missense_Mutation p.G1098S 0.31 tolerated_low_confidence(0.55) benign(0.001) TCGA-A6-3809-01 19 33167268 33167268 G A RGS9BP Silent p.S33S 0.24 TCGA-A6-3809-01 19 33202820 33202820 A G NUDT19 Missense_Mutation p.H362R 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-A6-3809-01 19 33355168 33355168 G A SLC7A9 Silent p.Y104Y 0.18 TCGA-A6-3809-01 19 33696598 33696598 G A LRP3 Missense_Mutation p.V308M 0.21 deleterious(0) probably_damaging(0.986) TCGA-A6-3809-01 19 34263263 34263263 C A CHST8 Missense_Mutation p.H190Q 0.44 deleterious(0) probably_damaging(0.99) TCGA-A6-3809-01 19 34297772 34297772 A C KCTD15 Missense_Mutation p.S83R 0.31 deleterious(0.03) benign(0.038) TCGA-A6-3809-01 19 34925779 34925779 G A UBA2 Missense_Mutation p.R122Q 0.23 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 19 35249835 35249835 T C ZNF599 3'UTR 0.11 TCGA-A6-3809-01 19 35263758 35263758 G A ZNF599 5'UTR 0.29 TCGA-A6-3809-01 19 35530541 35530541 C T HPN 5'Flank 0.27 TCGA-A6-3809-01 19 3600188 3600188 C T TBXA2R Missense_Mutation p.A149T 0.19 tolerated(0.89) probably_damaging(0.998) TCGA-A6-3809-01 19 36049506 36049506 G A ATP4A Silent p.S446S 0.30 TCGA-A6-3809-01 19 36103685 36103685 C G HAUS5 5'UTR 0.31 TCGA-A6-3809-01 19 36210764 36210764 C - KMT2B Frame_Shift_Del p.P174Qfs*20 0.26 TCGA-A6-3809-01 19 36940889 36940889 A G ZNF566 Missense_Mutation p.C84R 0.28 tolerated(0.18) benign(0.193) TCGA-A6-3809-01 19 37309362 37309362 T G ZNF790 Silent p.S628S 0.21 TCGA-A6-3809-01 19 37733810 37733810 A C ZNF383 Missense_Mutation p.K224N 0.24 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 19 38385928 38385928 C T WDR87 Missense_Mutation p.A100T 0.23 possibly_damaging(0.802) TCGA-A6-3809-01 19 38964323 38964323 G C RYR1 Missense_Mutation p.G1358R 0.35 possibly_damaging(0.57) TCGA-A6-3809-01 19 39061259 39061259 C T RYR1 Missense_Mutation p.R4558W 0.23 unknown(0) TCGA-A6-3809-01 19 4013126 4013126 A G PIAS4 Missense_Mutation p.H78R 0.28 tolerated(0.43) benign(0) TCGA-A6-3809-01 19 40194993 40194996 TTTC - LGALS14 5'Flank 0.34 TCGA-A6-3809-01 19 40520111 40520111 C A ZNF546 Missense_Mutation p.R312S 0.36 tolerated(0.33) benign(0.408) TCGA-A6-3809-01 19 40710540 40710540 G T MAP3K10 Nonsense_Mutation p.E338* 0.17 TCGA-A6-3809-01 19 408309 408309 T - C2CD4C Frame_Shift_Del p.N18Tfs*25 0.26 TCGA-A6-3809-01 19 40928904 40928904 T G SERTAD1 Missense_Mutation p.N184H 0.35 deleterious(0.04) benign(0.172) TCGA-A6-3809-01 19 41111425 41111425 C G LTBP4 Missense_Mutation p.A253G 0.16 tolerated(0.27) benign(0.176) TCGA-A6-3809-01 19 41384722 41384722 C T CYP2A7 Silent p.T258T 0.21 TCGA-A6-3809-01 19 42224878 42224878 C T CEACAM5 Missense_Mutation p.S603L 0.39 tolerated(0.21) benign(0.035) TCGA-A6-3809-01 19 42492184 42492184 G A ATP1A3 Silent p.F100F 0.41 TCGA-A6-3809-01 19 42546889 42546889 G A GRIK5 Missense_Mutation p.R430C 0.23 tolerated(0.17) probably_damaging(0.956) TCGA-A6-3809-01 19 42583416 42583416 T A ZNF574 Missense_Mutation p.S220T 0.10 tolerated(0.98) possibly_damaging(0.787) TCGA-A6-3809-01 19 42752636 42752636 A G ERF Missense_Mutation p.L543P 0.28 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-A6-3809-01 19 42858151 42858151 C - MEGF8 Frame_Shift_Del p.D1264Tfs*8 0.23 TCGA-A6-3809-01 19 44030316 44030316 G A ETHE1 Intron 0.31 TCGA-A6-3809-01 19 44103099 44103099 G A ZNF576 Missense_Mutation p.G68R 0.43 deleterious(0.01) probably_damaging(0.988) TCGA-A6-3809-01 19 44116620 44116620 G A SRRM5 Missense_Mutation p.G116D 0.30 tolerated(0.06) possibly_damaging(0.799) TCGA-A6-3809-01 19 44610706 44610706 C T ZNF224 Silent p.P131P 0.33 TCGA-A6-3809-01 19 44982263 44982263 A C ZNF180 Missense_Mutation p.D145E 0.25 tolerated(0.43) benign(0.002) TCGA-A6-3809-01 19 4501278 4501278 G A HDGFRP2 Missense_Mutation p.G627D 0.30 tolerated(0.1) probably_damaging(0.969) TCGA-A6-3809-01 19 4501988 4501988 G - HDGFRP2 Frame_Shift_Del p.D668Tfs*65 0.35 TCGA-A6-3809-01 19 4529279 4529279 C - PLIN5 Intron 0.25 TCGA-A6-3809-01 19 45754868 45754868 G T MARK4 Missense_Mutation p.A8S 0.28 deleterious_low_confidence(0.02) benign(0.001) TCGA-A6-3809-01 19 45899118 45899118 C T PPP1R13L Silent p.P310P 0.35 TCGA-A6-3809-01 19 46268844 46268844 C - SIX5 Frame_Shift_Del p.G712Vfs*14 0.28 TCGA-A6-3809-01 19 46319148 46319148 G A SYMPK Silent p.A1216A 0.30 TCGA-A6-3809-01 19 46347303 46347303 A G SYMPK Missense_Mutation p.Y278H 0.23 deleterious(0) probably_damaging(0.981) TCGA-A6-3809-01 19 4652322 4652322 C T TNFAIP8L1 Silent p.F147F 0.07 TCGA-A6-3809-01 19 48047898 48047898 T - ZNF541 Frame_Shift_Del p.T630Pfs*22 0.24 TCGA-A6-3809-01 19 48876952 48876952 C T SYNGR4 Missense_Mutation p.T91I 0.31 tolerated(0.07) benign(0.113) TCGA-A6-3809-01 19 49116452 49116452 T C FAM83E Missense_Mutation p.S60G 0.43 deleterious(0.03) benign(0.09) TCGA-A6-3809-01 19 49167037 49167037 A C NTN5 Silent p.T335T 0.06 TCGA-A6-3809-01 19 49339739 49339739 G A HSD17B14 5'UTR 0.36 TCGA-A6-3809-01 19 49340442 49340442 T C PLEKHA4 3'UTR 0.32 TCGA-A6-3809-01 19 50037565 50037565 G A RCN3 Missense_Mutation p.A120T 0.20 tolerated(0.05) benign(0.081) TCGA-A6-3809-01 19 50138855 50138855 C - RRAS Frame_Shift_Del p.G212Afs*22 0.18 TCGA-A6-3809-01 19 50310115 50310115 C T AP2A1 3'UTR 0.25 TCGA-A6-3809-01 19 50381444 50381444 G T TBC1D17 Missense_Mutation p.K22N 0.20 tolerated(0.37) possibly_damaging(0.799) TCGA-A6-3809-01 19 50784954 50784954 G A MYH14 Missense_Mutation p.R1465H 0.21 deleterious(0.01) probably_damaging(0.912) TCGA-A6-3809-01 19 50881013 50881013 G A NR1H2 Missense_Mutation p.A23T 0.18 tolerated(0.76) unknown(0) TCGA-A6-3809-01 19 50919882 50919882 G A POLD1 Missense_Mutation p.R990H 0.23 deleterious(0) probably_damaging(0.981) TCGA-A6-3809-01 19 51274722 51274722 A T GPR32 Missense_Mutation p.I289F 0.20 tolerated(0.7) benign(0.008) TCGA-A6-3809-01 19 5131330 5131330 C G KDM4B Missense_Mutation p.A520G 0.32 benign(0.005) TCGA-A6-3809-01 19 51471382 51471382 C T KLK6 Intron 0.26 TCGA-A6-3809-01 19 51537899 51537899 G - KLK12 Intron 0.21 TCGA-A6-3809-01 19 51728380 51728380 G A CD33 Silent p.P2P 0.18 TCGA-A6-3809-01 19 51875676 51875676 A G NKG7 Silent p.A38A 0.27 TCGA-A6-3809-01 19 52216980 52216980 C T HAS1 Silent p.A479A 0.23 TCGA-A6-3809-01 19 52618393 52618393 T G ZNF616 Missense_Mutation p.N675T 0.30 tolerated(0.73) benign(0.016) TCGA-A6-3809-01 19 53384531 53384531 G A ZNF320 Missense_Mutation p.A283V 0.28 deleterious(0.04) benign(0.021) TCGA-A6-3809-01 19 54652218 54652218 C T CNOT3 Silent p.S410S 0.27 TCGA-A6-3809-01 19 55653286 55653286 C T TNNT1 Missense_Mutation p.R44H 0.30 deleterious(0.05) unknown(0) TCGA-A6-3809-01 19 5604815 5604815 T C SAFB2 Missense_Mutation p.M477V 0.06 deleterious(0) benign(0.089) TCGA-A6-3809-01 19 56206220 56206220 C - EPN1 Frame_Shift_Del p.T553Pfs*22 0.23 TCGA-A6-3809-01 19 56223203 56223203 C G NLRP9 Missense_Mutation p.A936P 0.25 deleterious(0) possibly_damaging(0.892) TCGA-A6-3809-01 19 56369350 56369350 G A NLRP4 Silent p.P197P 0.18 TCGA-A6-3809-01 19 56370115 56370115 C T NLRP4 Silent p.H452H 0.26 TCGA-A6-3809-01 19 56443533 56443533 G - NLRP13 Frame_Shift_Del p.Q49Rfs*12 0.20 TCGA-A6-3809-01 19 56600117 56600117 G C ZNF787 Missense_Mutation p.R142G 0.39 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 19 5678622 5678622 G - C19orf70 Frame_Shift_Del p.S100Pfs*14 0.13 TCGA-A6-3809-01 19 57133027 57133027 C T ZNF71 Silent p.C124C 0.28 TCGA-A6-3809-01 19 5751739 5751739 C T CATSPERD Missense_Mutation p.R357C 0.35 deleterious(0.04) possibly_damaging(0.729) TCGA-A6-3809-01 19 5786846 5786846 C T DUS3L Missense_Mutation p.R467H 0.41 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 19 57868616 57868616 A T ZNF304 Missense_Mutation p.D460V 0.23 tolerated(0.27) probably_damaging(0.999) TCGA-A6-3809-01 19 59073876 59073876 C T MZF1 Missense_Mutation p.V590I 0.28 tolerated(0.76) benign(0.18) TCGA-A6-3809-01 19 6361607 6361607 G - CLPP Frame_Shift_Del p.A10Pfs*117 0.20 TCGA-A6-3809-01 19 6746160 6746160 G C TRIP10 Intron 0.28 TCGA-A6-3809-01 19 6836478 6836478 G A VAV1 Missense_Mutation p.G605R 0.28 deleterious(0.04) possibly_damaging(0.855) TCGA-A6-3809-01 19 7585009 7585009 C T ZNF358 Missense_Mutation p.P294L 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-A6-3809-01 19 8373175 8373175 G A CD320 5'UTR 0.20 TCGA-A6-3809-01 19 8429156 8429156 C A ANGPTL4 5'UTR 0.35 TCGA-A6-3809-01 19 843626 843626 T C PRTN3 Missense_Mutation p.I76T 0.19 tolerated(0.6) benign(0.012) TCGA-A6-3809-01 19 8654128 8654128 G A ADAMTS10 Missense_Mutation p.A719V 0.33 deleterious(0.05) benign(0.16) TCGA-A6-3809-01 19 868058 868058 G A MED16 3'UTR 0.39 TCGA-A6-3809-01 19 9204850 9204850 C A OR1M1 Silent p.T310T 0.31 TCGA-A6-3809-01 19 9298274 9298274 C A OR7D2 3'UTR 0.06 TCGA-A6-3809-01 19 9676624 9676624 T - ZNF121 Frame_Shift_Del p.T389Hfs*7 0.19 TCGA-A6-3809-01 1 100534129 100534129 T A HIAT1 Nonsense_Mutation p.L269* 0.32 TCGA-A6-3809-01 1 103354291 103354291 G A COL11A1 Silent p.N1514N 0.29 TCGA-A6-3809-01 1 103573668 103573668 C T COL11A1 Missense_Mutation p.A23T 0.29 benign(0.246) TCGA-A6-3809-01 1 107691172 107691172 C T NTNG1 5'UTR 0.20 TCGA-A6-3809-01 1 109792818 109792818 C A CELSR2 Silent p.S39S 0.43 TCGA-A6-3809-01 1 109805510 109805510 G A CELSR2 Missense_Mutation p.V1543M 0.04 deleterious(0.04) possibly_damaging(0.746) TCGA-A6-3809-01 1 109823015 109823015 G A PSRC1 Intron 0.31 TCGA-A6-3809-01 1 110050404 110050404 T C AMIGO1 Silent p.L377L 0.50 TCGA-A6-3809-01 1 110199939 110199939 C T GSTM4 Intron 0.26 TCGA-A6-3809-01 1 113460534 113460534 T C SLC16A1 Missense_Mutation p.N165S 0.05 tolerated(0.13) possibly_damaging(0.461) TCGA-A6-3809-01 1 11595679 11595679 A G PTCHD2 Missense_Mutation p.N1265S 0.17 tolerated(0.37) benign(0.016) TCGA-A6-3809-01 1 116228013 116228013 C T VANGL1 Silent p.A393A 0.28 TCGA-A6-3809-01 1 116675980 116675980 G A MAB21L3 Silent p.P361P 0.26 TCGA-A6-3809-01 1 117492112 117492112 G A PTGFRN Silent p.L377L 0.25 TCGA-A6-3809-01 1 117633247 117633247 T C TTF2 Splice_Site p.X863_splice 0.33 TCGA-A6-3809-01 1 11863271 11863271 G A MTHFR 5'UTR 0.36 TCGA-A6-3809-01 1 119619004 119619004 G A WARS2 Missense_Mutation p.P106L 0.33 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 1 12049311 12049311 T C MFN2 Missense_Mutation p.L29P 0.08 deleterious(0) probably_damaging(0.971) TCGA-A6-3809-01 1 120854677 120854677 T - FAM72B 3'UTR 0.13 TCGA-A6-3809-01 1 12157217 12157217 C T TNFRSF8 Missense_Mutation p.P71S 0.38 tolerated(0.06) benign(0.065) TCGA-A6-3809-01 1 14105221 14105221 C T PRDM2 Missense_Mutation p.R311W 0.05 probably_damaging(0.948) TCGA-A6-3809-01 1 14106965 14106965 T C PRDM2 Missense_Mutation p.L892P 0.18 probably_damaging(0.999) TCGA-A6-3809-01 1 142699289 142699289 A C RP11-417J8.6 RNA 0.21 TCGA-A6-3809-01 1 144866680 144866680 C T PDE4DIP Silent p.L1854L 0.10 TCGA-A6-3809-01 1 149895737 149895737 G A SF3B4 Silent p.P361P 0.31 TCGA-A6-3809-01 1 150064115 150064115 C T VPS45 Nonsense_Mutation p.R397* 0.29 TCGA-A6-3809-01 1 150234655 150234655 G - CA14 Frame_Shift_Del p.S121Qfs*27 0.14 TCGA-A6-3809-01 1 150671080 150671080 A C HORMAD1 3'UTR 0.32 TCGA-A6-3809-01 1 151040501 151040502 - T MLLT11 3'UTR 0.22 TCGA-A6-3809-01 1 151131238 151131238 C T TNFAIP8L2 Missense_Mutation p.A22V 0.32 tolerated(0.08) probably_damaging(0.992) TCGA-A6-3809-01 1 152082413 152082413 G A TCHH Silent p.L1094L 0.37 TCGA-A6-3809-01 1 152285875 152285875 T C FLG Missense_Mutation p.H496R 0.09 benign(0.014) TCGA-A6-3809-01 1 152487923 152487923 G A CRCT1 Missense_Mutation p.A22T 0.28 unknown(0) TCGA-A6-3809-01 1 153533830 153533830 A - S100A2 3'UTR 0.17 TCGA-A6-3809-01 1 153609333 153609333 T C CHTOP Intron 0.27 TCGA-A6-3809-01 1 153660672 153660672 C T NPR1 Missense_Mutation p.R798C 0.41 deleterious(0) probably_damaging(0.953) TCGA-A6-3809-01 1 153746472 153746472 T G INTS3 3'UTR 0.08 TCGA-A6-3809-01 1 153916829 153916829 G - DENND4B Frame_Shift_Del p.R8Gfs*8 0.25 TCGA-A6-3809-01 1 154932150 154932150 C - PYGO2 Frame_Shift_Del p.G109Afs*52 0.26 TCGA-A6-3809-01 1 155291284 155291284 G - RUSC1 Intron 0.22 TCGA-A6-3809-01 1 15546160 15546160 C A TMEM51 Missense_Mutation p.P228H 0.36 deleterious(0.02) possibly_damaging(0.83) TCGA-A6-3809-01 1 155742951 155742951 T G GON4L Missense_Mutation p.S801R 0.28 tolerated(0.96) benign(0.049) TCGA-A6-3809-01 1 155744875 155744875 C T GON4L Silent p.L756L 0.05 TCGA-A6-3809-01 1 155870342 155870344 GCA - RIT1 In_Frame_Del p.A183del 0.26 TCGA-A6-3809-01 1 156013827 156013827 G A UBQLN4 Missense_Mutation p.S363L 0.22 tolerated(0.06) probably_damaging(0.961) TCGA-A6-3809-01 1 156220696 156220696 T C SMG5 Missense_Mutation p.T974A 0.10 tolerated(0.15) probably_damaging(0.97) TCGA-A6-3809-01 1 156628410 156628410 C T BCAN Missense_Mutation p.T838I 0.35 deleterious(0) benign(0.285) TCGA-A6-3809-01 1 156641585 156641585 G A NES Missense_Mutation p.L799F 0.27 tolerated(0.06) benign(0.086) TCGA-A6-3809-01 1 158450237 158450237 C T OR10R2 Silent p.S190S 0.28 TCGA-A6-3809-01 1 158655019 158655019 T C SPTA1 Missense_Mutation p.K48R 0.11 tolerated(0.29) possibly_damaging(0.637) TCGA-A6-3809-01 1 158669532 158669532 T - OR6K2 Frame_Shift_Del p.K304Sfs*3 0.26 TCGA-A6-3809-01 1 15893604 15893604 A - DNAJC16 Frame_Shift_Del p.G599Afs*5 0.25 TCGA-A6-3809-01 1 159175853 159175854 CA - DARC Frame_Shift_Del p.T213Cfs*112 0.35 TCGA-A6-3809-01 1 160094177 160094177 G A ATP1A2 Missense_Mutation p.R196H 0.24 deleterious(0) probably_damaging(0.985) TCGA-A6-3809-01 1 161332522 161332522 T C SDHC 3'UTR 0.22 TCGA-A6-3809-01 1 16259480 16259480 C - SPEN Frame_Shift_Del p.A2251Qfs*102 0.22 TCGA-A6-3809-01 1 16385039 16385039 G A FAM131C Missense_Mutation p.R246W 0.15 deleterious(0.01) benign(0.059) TCGA-A6-3809-01 1 165380234 165380234 A C RXRG Silent p.A245A 0.32 TCGA-A6-3809-01 1 165514019 165514019 G T LRRC52 Missense_Mutation p.L162F 0.35 deleterious(0) probably_damaging(0.99) TCGA-A6-3809-01 1 167097714 167097714 C T DUSP27 Missense_Mutation p.R1116W 0.42 deleterious(0.01) possibly_damaging(0.891) TCGA-A6-3809-01 1 167741617 167741617 A G MPZL1 Missense_Mutation p.I122V 0.42 tolerated(0.23) possibly_damaging(0.487) TCGA-A6-3809-01 1 168250528 168250528 G A TBX19 Missense_Mutation p.G67D 0.06 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 1 16901150 16901150 C A NBPF1 Missense_Mutation p.D744Y 0.18 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 1 169351457 169351458 - A BLZF1 Frame_Shift_Ins p.I322Dfs*6 0.33 TCGA-A6-3809-01 1 17292378 17292378 G T CROCC Missense_Mutation p.Q1522H 0.31 benign(0.387) TCGA-A6-3809-01 1 175372653 175372653 G A TNR Missense_Mutation p.S200L 0.24 deleterious(0) possibly_damaging(0.877) TCGA-A6-3809-01 1 17718638 17718638 C T PADI6 RNA 0.37 TCGA-A6-3809-01 1 177929480 177929480 A G SEC16B Missense_Mutation p.I332T 0.29 tolerated(0.3) benign(0.05) TCGA-A6-3809-01 1 179095783 179095783 T C ABL2 Missense_Mutation p.Y139C 0.33 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 1 182025955 182025955 G A ZNF648 Silent p.C397C 0.14 TCGA-A6-3809-01 1 182545499 182545500 - T RNASEL Frame_Shift_Ins p.M644Nfs*3 0.29 TCGA-A6-3809-01 1 18618405 18618405 G A IGSF21 Missense_Mutation p.A77T 0.22 tolerated(0.09) probably_damaging(0.994) TCGA-A6-3809-01 1 18962813 18962813 C T PAX7 Silent p.D178D 0.22 TCGA-A6-3809-01 1 190067506 190067506 G A BRINP3 Missense_Mutation p.P648L 0.30 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 1 19236938 19236938 A G IFFO2 Missense_Mutation p.M449T 0.36 deleterious(0) probably_damaging(0.968) TCGA-A6-3809-01 1 193111030 193111030 A C CDC73 Missense_Mutation p.K188T 0.29 deleterious(0) probably_damaging(0.963) TCGA-A6-3809-01 1 19559600 19559600 G T EMC1 Missense_Mutation p.L488I 0.31 tolerated(0.21) benign(0.098) TCGA-A6-3809-01 1 196295987 196295987 T G KCNT2 Missense_Mutation p.K712N 0.24 tolerated(0.12) possibly_damaging(0.632) TCGA-A6-3809-01 1 196296015 196296015 C T KCNT2 Missense_Mutation p.C703Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 1 196715081 196715081 C T CFH Nonsense_Mutation p.R1149* 0.29 TCGA-A6-3809-01 1 197404735 197404735 T A CRB1 Missense_Mutation p.F1248I 0.23 deleterious(0.02) possibly_damaging(0.676) TCGA-A6-3809-01 1 197886942 197886942 G A LHX9 5'UTR 0.34 TCGA-A6-3809-01 1 197898298 197898298 C A LHX9 Missense_Mutation p.P368H 0.27 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 1 197901214 197901216 AAG - LHX9 3'Flank 0.21 TCGA-A6-3809-01 1 200819015 200819015 A - CAMSAP2 Frame_Shift_Del p.K1041Rfs*43 0.23 TCGA-A6-3809-01 1 201174207 201174207 C A IGFN1 Intron 0.26 TCGA-A6-3809-01 1 201355726 201355726 G T LAD1 Missense_Mutation p.L255M 0.26 tolerated(0.08) possibly_damaging(0.487) TCGA-A6-3809-01 1 201984481 201984481 A T ELF3 3'UTR 0.15 TCGA-A6-3809-01 1 202097066 202097066 T G GPR37L1 Silent p.P276P 0.43 TCGA-A6-3809-01 1 202121743 202121743 G C PTPN7 Missense_Mutation p.L373V 0.07 tolerated(0.12) probably_damaging(0.995) TCGA-A6-3809-01 1 202718257 202718257 C T KDM5B Missense_Mutation p.G611D 0.34 deleterious(0) probably_damaging(0.969) TCGA-A6-3809-01 1 202912986 202912986 C T ADIPOR1 Silent p.R235R 0.31 TCGA-A6-3809-01 1 203465247 203465247 C T OPTC Silent p.G38G 0.36 TCGA-A6-3809-01 1 204131192 204131192 C T REN Silent p.R66R 0.24 TCGA-A6-3809-01 1 207041895 207041895 G T IL20 Nonsense_Mutation p.E173* 0.09 TCGA-A6-3809-01 1 207867927 207867927 G A CR1L Silent p.T231T 0.32 TCGA-A6-3809-01 1 208201366 208201366 C G PLXNA2 Missense_Mutation p.K1859N 0.32 deleterious(0) probably_damaging(0.987) TCGA-A6-3809-01 1 209956155 209956155 G T C1orf74 3'UTR 0.31 TCGA-A6-3809-01 1 210186978 210186978 T C SYT14 Missense_Mutation p.V66A 0.25 deleterious(0) possibly_damaging(0.447) TCGA-A6-3809-01 1 211256164 211256164 C T KCNH1 Silent p.V172V 0.36 TCGA-A6-3809-01 1 21190975 21190975 T - EIF4G3 Frame_Shift_Del p.A951Qfs*16 0.19 TCGA-A6-3809-01 1 213134640 213134640 G T VASH2 Intron 0.09 TCGA-A6-3809-01 1 214178537 214178537 G A PROX1 Silent p.L585L 0.29 TCGA-A6-3809-01 1 214787240 214787240 T C CENPF Missense_Mutation p.L48P 0.25 probably_damaging(0.999) TCGA-A6-3809-01 1 22179434 22179434 C - HSPG2 Frame_Shift_Del p.G2190Afs*19 0.25 TCGA-A6-3809-01 1 223567190 223567190 A G C1orf65 Missense_Mutation p.T125A 0.31 tolerated(0.77) benign(0.009) TCGA-A6-3809-01 1 223934727 223934727 G - CAPN2 Frame_Shift_Del p.G198Vfs*20 0.27 TCGA-A6-3809-01 1 226019631 226019631 G T EPHX1 Missense_Mutation p.R112I 0.34 deleterious(0) benign(0.027) TCGA-A6-3809-01 1 227153394 227153394 G A ADCK3 Missense_Mutation p.R204Q 0.29 deleterious(0.04) benign(0.426) TCGA-A6-3809-01 1 227174316 227174316 T C ADCK3 Missense_Mutation p.S608P 0.16 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 1 228333458 228333458 C - GUK1 Intron 0.23 TCGA-A6-3809-01 1 228402039 228402040 CA - OBSCN Frame_Shift_Del p.L477Nfs*90 0.23 TCGA-A6-3809-01 1 228468281 228468281 C T OBSCN Missense_Mutation p.R3090C 0.09 benign(0.229) TCGA-A6-3809-01 1 228504479 228504479 C T OBSCN Missense_Mutation p.T5409I 0.38 possibly_damaging(0.487) TCGA-A6-3809-01 1 228559640 228559640 C T OBSCN Missense_Mutation p.A8011V 0.27 benign(0.004) TCGA-A6-3809-01 1 228560054 228560054 G T OBSCN Missense_Mutation p.G8149V 0.27 probably_damaging(0.999) TCGA-A6-3809-01 1 229772042 229772042 C A URB2 Missense_Mutation p.P561H 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 1 236381543 236381543 A - ERO1LB 3'UTR 0.40 TCGA-A6-3809-01 1 236399391 236399392 - T ERO1LB Intron 0.29 TCGA-A6-3809-01 1 237730023 237730023 C T RYR2 Missense_Mutation p.P1124L 0.36 probably_damaging(0.969) TCGA-A6-3809-01 1 237961362 237961362 A G RYR2 Missense_Mutation p.Y4661C 0.30 probably_damaging(0.926) TCGA-A6-3809-01 1 240256800 240256800 C - FMN2 Frame_Shift_Del p.P465Rfs*15 0.17 TCGA-A6-3809-01 1 241676922 241676922 A T FH Missense_Mutation p.I120K 0.26 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 1 241798374 241798374 T A CHML Missense_Mutation p.D232V 0.26 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 1 2429980 2429980 C T PLCH2 Missense_Mutation p.S721L 0.39 tolerated(0.24) benign(0.013) TCGA-A6-3809-01 1 24488116 24488116 A G IFNLR1 Silent p.N142N 0.31 TCGA-A6-3809-01 1 245319708 245319708 T G KIF26B Missense_Mutation p.L63R 0.19 tolerated_low_confidence(0.11) unknown(0) TCGA-A6-3809-01 1 246810912 246810912 C T CNST Missense_Mutation p.A470V 0.26 tolerated(0.21) benign(0.089) TCGA-A6-3809-01 1 247162735 247162735 A G ZNF695 Silent p.A58A 0.27 TCGA-A6-3809-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.19 TCGA-A6-3809-01 1 247769184 247769184 G A OR2G3 Silent p.A99A 0.05 TCGA-A6-3809-01 1 247835435 247835435 T C OR13G1 Silent p.A303A 0.33 TCGA-A6-3809-01 1 248004941 248004941 C T OR11L1 Silent p.L86L 0.25 TCGA-A6-3809-01 1 248308630 248308630 T G OR2M5 Missense_Mutation p.F61V 0.07 deleterious(0.02) benign(0.012) TCGA-A6-3809-01 1 248512384 248512384 T - OR14C36 Frame_Shift_Del p.F105Lfs*28 0.24 TCGA-A6-3809-01 1 248722760 248722760 A G OR2T29 Silent p.T11T 0.07 TCGA-A6-3809-01 1 249150612 249150612 T C ZNF692 Silent p.G183G 0.24 TCGA-A6-3809-01 1 27055996 27055996 G T ARID1A Intron 0.19 TCGA-A6-3809-01 1 27219172 27219172 G A GPATCH3 Missense_Mutation p.R408C 0.26 deleterious(0) possibly_damaging(0.88) TCGA-A6-3809-01 1 27677228 27677228 G A SYTL1 Intron 0.30 TCGA-A6-3809-01 1 28857059 28857059 G A RCC1 Missense_Mutation p.R33H 0.36 tolerated(0.24) benign(0.003) TCGA-A6-3809-01 1 32090676 32090676 C T HCRTR1 Silent p.Y348Y 0.27 TCGA-A6-3809-01 1 32653705 32653705 C T TXLNA Missense_Mutation p.R250W 0.35 deleterious(0) probably_damaging(0.995) TCGA-A6-3809-01 1 32670631 32670631 G A CCDC28B Intron 0.31 TCGA-A6-3809-01 1 32681472 32681472 G A DCDC2B Missense_Mutation p.A342T 0.39 tolerated_low_confidence(0.24) benign(0.014) TCGA-A6-3809-01 1 33160890 33160890 A G SYNC Missense_Mutation p.F270S 0.20 tolerated(0.19) probably_damaging(0.984) TCGA-A6-3809-01 1 33219721 33219721 C A KIAA1522 Intron 0.05 TCGA-A6-3809-01 1 33235374 33235374 G A KIAA1522 Silent p.V229V 0.28 TCGA-A6-3809-01 1 3334548 3334548 C T PRDM16 Nonsense_Mutation p.R950* 0.32 TCGA-A6-3809-01 1 36938252 36938252 G T CSF3R Missense_Mutation p.P237T 0.43 tolerated(0.14) benign(0.144) TCGA-A6-3809-01 1 39341217 39341217 G A GJA9 Missense_Mutation p.P185L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-A6-3809-01 1 39469860 39469860 A G AKIRIN1 3'UTR 0.14 TCGA-A6-3809-01 1 39913188 39913188 C A MACF1 Missense_Mutation p.Q4505K 0.05 probably_damaging(0.997) TCGA-A6-3809-01 1 43004947 43004947 T C CCDC30 Missense_Mutation p.L74P 0.26 deleterious(0.03) probably_damaging(0.957) TCGA-A6-3809-01 1 43918202 43918202 C T SZT2 3'UTR 0.38 TCGA-A6-3809-01 1 44057099 44057099 C T PTPRF Missense_Mutation p.A469V 0.28 tolerated(0.06) benign(0.256) TCGA-A6-3809-01 1 44121280 44121280 T G KDM4A Missense_Mutation p.W53G 0.24 deleterious(0.01) benign(0.084) TCGA-A6-3809-01 1 44474255 44474255 G A SLC6A9 Silent p.G193G 0.39 TCGA-A6-3809-01 1 45806097 45806097 G T MUTYH 5'Flank 0.50 TCGA-A6-3809-01 1 45808187 45808187 T C TOE1 Silent p.P208P 0.32 TCGA-A6-3809-01 1 46656368 46656368 C A POMGNT1 Intron 0.39 TCGA-A6-3809-01 1 46810713 46810713 G T NSUN4 Missense_Mutation p.G112C 0.33 deleterious(0.02) benign(0.021) TCGA-A6-3809-01 1 47746465 47746465 G T STIL Silent p.P555P 0.33 TCGA-A6-3809-01 1 47882297 47882297 C T FOXE3 Missense_Mutation p.R104C 0.31 deleterious(0) probably_damaging(0.993) TCGA-A6-3809-01 1 47904553 47904553 C T FOXD2 Missense_Mutation p.A249V 0.26 deleterious_low_confidence(0.02) unknown(0) TCGA-A6-3809-01 1 48864966 48864966 T - SPATA6 Intron 0.23 TCGA-A6-3809-01 1 52981487 52981488 - A ZCCHC11 Intron 0.20 TCGA-A6-3809-01 1 53377283 53377283 G A ECHDC2 Missense_Mutation p.R78C 0.32 deleterious(0) probably_damaging(0.986) TCGA-A6-3809-01 1 53546495 53546495 G A PODN Silent p.A584A 0.39 TCGA-A6-3809-01 1 54640309 54640309 A C CYB5RL Missense_Mutation p.S311A 0.42 deleterious(0.05) benign(0.009) TCGA-A6-3809-01 1 54870294 54870294 T - SSBP3 Frame_Shift_Del p.N49Tfs*95 0.23 TCGA-A6-3809-01 1 6008182 6008182 A C NPHP4 Missense_Mutation p.L314V 0.30 tolerated(0.49) benign(0.373) TCGA-A6-3809-01 1 63999208 63999208 T C EFCAB7 Silent p.R190R 0.24 TCGA-A6-3809-01 1 66732405 66732405 C T PDE4B Intron 0.19 TCGA-A6-3809-01 1 74715142 74715142 G A FPGT-TNNI3K Splice_Site p.X164_splice 0.17 TCGA-A6-3809-01 1 75184933 75184933 C T CRYZ Missense_Mutation p.G130S 0.31 deleterious(0.02) possibly_damaging(0.733) TCGA-A6-3809-01 1 85431291 85431291 G A MCOLN2 Missense_Mutation p.R60C 0.29 deleterious(0.03) possibly_damaging(0.556) TCGA-A6-3809-01 1 86581029 86581029 C T COL24A1 Silent p.P508P 0.33 TCGA-A6-3809-01 1 8716109 8716109 T - RERE Frame_Shift_Del p.K83Sfs*12 0.23 TCGA-A6-3809-01 1 87810502 87810502 C T LMO4 3'UTR 0.23 TCGA-A6-3809-01 1 89519110 89519110 G A GBP1 Silent p.S569S 0.25 TCGA-A6-3809-01 1 91382293 91382293 A - ZNF644 3'UTR 0.26 TCGA-A6-3809-01 1 91726585 91726585 C A HFM1 3'UTR 0.29 TCGA-A6-3809-01 1 97279058 97279080 GTTTTTGTTTTTTTGGGGTTTCT TGTTTTTGTTTTTTTGGGGTTTC PTBP2 3'UTR 0.13 TCGA-A6-3809-01 20 17614206 17614206 C A RRBP1 Nonsense_Mutation p.E404* 0.26 TCGA-A6-3809-01 20 17640059 17640059 G C RRBP1 Intron 0.31 TCGA-A6-3809-01 20 23028655 23028655 G - THBD Frame_Shift_Del p.P496Rfs*10 0.26 TCGA-A6-3809-01 20 2539322 2539322 C T TMC2 Silent p.R101R 0.25 TCGA-A6-3809-01 20 2633447 2633447 C T NOP56 Intron 0.31 TCGA-A6-3809-01 20 270213 270213 A G C20orf96 Silent p.T58T 0.28 TCGA-A6-3809-01 20 2776320 2776320 G A CPXM1 Nonsense_Mutation p.R549* 0.33 TCGA-A6-3809-01 20 279874 279874 A G ZCCHC3 3'UTR 0.07 TCGA-A6-3809-01 20 3025112 3025112 C T GNRH2 Missense_Mutation p.L18F 0.35 tolerated(0.07) benign(0.084) TCGA-A6-3809-01 20 30822387 30822387 C T POFUT1 Missense_Mutation p.R364W 0.37 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.17 TCGA-A6-3809-01 20 35128608 35128608 C T DLGAP4 Silent p.S699S 0.30 TCGA-A6-3809-01 20 35312850 35312850 C A NDRG3 Missense_Mutation p.A117S 0.26 tolerated(0.22) benign(0.124) TCGA-A6-3809-01 20 35399448 35399448 T - DSN1 Frame_Shift_Del p.G63Efs*39 0.17 TCGA-A6-3809-01 20 3670786 3670786 C T SIGLEC1 Missense_Mutation p.V1573M 0.28 deleterious(0.05) probably_damaging(0.964) TCGA-A6-3809-01 20 36767992 36767992 G A TGM2 Silent p.Y388Y 0.29 TCGA-A6-3809-01 20 3766262 3766262 C T CENPB Missense_Mutation p.R290H 0.11 deleterious(0) unknown(0) TCGA-A6-3809-01 20 40730849 40730849 T C PTPRT Missense_Mutation p.D1210G 0.21 deleterious(0) possibly_damaging(0.809) TCGA-A6-3809-01 20 419378 419378 G A TBC1D20 Missense_Mutation p.T355I 0.31 tolerated(0.17) benign(0.019) TCGA-A6-3809-01 20 4228964 4228964 G A ADRA1D Missense_Mutation p.A214V 0.08 tolerated(0.76) benign(0.055) TCGA-A6-3809-01 20 43933145 43933145 G A MATN4 Silent p.N122N 0.20 TCGA-A6-3809-01 20 45174926 45174927 - G OCSTAMP Frame_Shift_Ins p.L30Tfs*159 0.24 TCGA-A6-3809-01 20 48504559 48504559 G A SLC9A8 3'UTR 0.28 TCGA-A6-3809-01 20 48522342 48522342 G A SPATA2 Silent p.R459R 0.23 TCGA-A6-3809-01 20 49203727 49203727 A - FAM65C 3'UTR 0.25 TCGA-A6-3809-01 20 49520470 49520470 T - ADNP Frame_Shift_Del p.I22Yfs*14 0.26 TCGA-A6-3809-01 20 49576247 49576247 C A MOCS3 Missense_Mutation p.L290M 0.24 deleterious(0) probably_damaging(0.964) TCGA-A6-3809-01 20 51870695 51870695 A G TSHZ2 Missense_Mutation p.H233R 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 20 55948626 55948626 C - RAE1 Frame_Shift_Del p.P248Rfs*29 0.25 TCGA-A6-3809-01 20 56188125 56188125 C - ZBP1 Intron 0.26 TCGA-A6-3809-01 20 56227095 56227095 C - PMEPA1 3'UTR 0.24 TCGA-A6-3809-01 20 57036356 57036356 G A APCDD1L Silent p.A332A 0.23 TCGA-A6-3809-01 20 57089808 57089808 C T APCDD1L 5'UTR 0.32 TCGA-A6-3809-01 20 57566468 57566468 G A NELFCD Silent p.A370A 0.11 TCGA-A6-3809-01 20 60902291 60902291 G T LAMA5 Silent p.R1704R 0.32 TCGA-A6-3809-01 20 61143978 61143978 T C C20orf166 5'Flank 0.18 TCGA-A6-3809-01 20 61288010 61288010 C T SLCO4A1 Silent p.G68G 0.29 TCGA-A6-3809-01 20 61290060 61290060 A G SLCO4A1 Silent p.P276P 0.27 TCGA-A6-3809-01 20 61340724 61340724 C T NTSR1 Silent p.D55D 0.26 TCGA-A6-3809-01 20 61341154 61341154 C T NTSR1 Silent p.L199L 0.21 TCGA-A6-3809-01 20 61513482 61513482 G T DIDO1 Missense_Mutation p.L1276M 0.23 possibly_damaging(0.889) TCGA-A6-3809-01 20 62178755 62178755 G A SRMS Missense_Mutation p.P21L 0.26 deleterious(0) possibly_damaging(0.9) TCGA-A6-3809-01 20 62850284 62850284 G A MYT1 Missense_Mutation p.A623T 0.21 benign(0.376) TCGA-A6-3809-01 20 6750879 6750879 G T BMP2 Missense_Mutation p.A36S 0.40 tolerated(0.74) benign(0.002) TCGA-A6-3809-01 21 10906851 10906851 G A TPTE 3'UTR 0.12 TCGA-A6-3809-01 21 27394321 27394323 CTT - APP In_Frame_Del p.E233del 0.45 TCGA-A6-3809-01 21 28216842 28216842 G A ADAMTS1 Silent p.G144G 0.19 TCGA-A6-3809-01 21 33067187 33067187 T C SCAF4 Missense_Mutation p.Q392R 0.06 possibly_damaging(0.525) TCGA-A6-3809-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.23 TCGA-A6-3809-01 21 34444240 34444240 A - OLIG1 3'UTR 0.25 TCGA-A6-3809-01 21 34926080 34926080 G T SON Missense_Mutation p.A1515S 0.22 benign(0.364) TCGA-A6-3809-01 21 37507450 37507450 G A CBR3 5'UTR 0.30 TCGA-A6-3809-01 21 37507734 37507734 G - CBR3 Frame_Shift_Del p.L84Sfs*26 0.23 TCGA-A6-3809-01 21 37618413 37618413 C T DOPEY2 Nonsense_Mutation p.Q1379* 0.30 TCGA-A6-3809-01 21 40670152 40670152 T C BRWD1 Intron 0.45 TCGA-A6-3809-01 21 40714921 40714921 A - HMGN1 3'UTR 0.27 TCGA-A6-3809-01 21 45152205 45152205 C - PDXK Intron 0.26 TCGA-A6-3809-01 21 45223723 45223723 C T RRP1 3'UTR 0.23 TCGA-A6-3809-01 21 45655309 45655309 G A ICOSLG Silent p.D181D 0.39 TCGA-A6-3809-01 21 46924402 46924402 G A COL18A1 Missense_Mutation p.G1114S 0.33 benign(0.379) TCGA-A6-3809-01 21 47409680 47409680 C T COL6A1 Silent p.S306S 0.32 TCGA-A6-3809-01 21 47671623 47671623 A - MCM3AP Intron 0.37 TCGA-A6-3809-01 22 17071787 17071787 T - CCT8L2 Frame_Shift_Del p.I552Sfs*4 0.37 TCGA-A6-3809-01 22 17083089 17083089 C A TPTEP1 RNA 0.26 TCGA-A6-3809-01 22 18028537 18028537 A G CECR2 Missense_Mutation p.H1166R 0.34 deleterious(0.01) benign(0.03) TCGA-A6-3809-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.30 TCGA-A6-3809-01 22 18570914 18570914 T C PEX26 3'UTR 0.36 TCGA-A6-3809-01 22 18835547 18835547 G T AC008132.13 Missense_Mutation p.G368V 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-A6-3809-01 22 18982031 18982031 G A DGCR5 RNA 0.27 TCGA-A6-3809-01 22 19422280 19422280 G - MRPL40 Frame_Shift_Del p.K54Rfs*3 0.20 TCGA-A6-3809-01 22 19776479 19776479 C T GNB1L Missense_Mutation p.R246H 0.37 tolerated(0.59) benign(0.005) TCGA-A6-3809-01 22 19961672 19961672 G A ARVCF Missense_Mutation p.A684V 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-A6-3809-01 22 20043483 20043483 T C TANGO2 Missense_Mutation p.V133A 0.38 tolerated(0.11) benign(0.217) TCGA-A6-3809-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.24 TCGA-A6-3809-01 22 20723745 20723745 C T USP41 Missense_Mutation p.V201M 0.23 tolerated(0.23) benign(0.022) TCGA-A6-3809-01 22 22682093 22682093 C T IGLV1-50 Missense_Mutation p.A92V 0.29 tolerated_low_confidence(0.07) benign(0.168) TCGA-A6-3809-01 22 22869625 22869625 C T ZNF280A Silent p.S110S 0.32 TCGA-A6-3809-01 22 23438488 23438488 G - GNAZ Frame_Shift_Del p.Q205Rfs*29 0.31 TCGA-A6-3809-01 22 23631739 23631739 C T BCR Nonsense_Mutation p.Q880* 0.32 TCGA-A6-3809-01 22 24717528 24717528 A C SPECC1L Missense_Mutation p.T194P 0.30 deleterious(0.01) benign(0.265) TCGA-A6-3809-01 22 26173630 26173630 G A MYO18B Silent p.Q650Q 0.33 TCGA-A6-3809-01 22 28426240 28426240 C T TTC28 Missense_Mutation p.M1349I 0.35 deleterious(0.03) benign(0.118) TCGA-A6-3809-01 22 29879374 29879374 C T NEFH Silent p.D298D 0.23 TCGA-A6-3809-01 22 30125451 30125451 C T CABP7 Missense_Mutation p.R181C 0.18 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-A6-3809-01 22 30811807 30811807 G - SEC14L2 Frame_Shift_Del p.G243Afs*3 0.19 TCGA-A6-3809-01 22 33700396 33700396 C T LARGE Missense_Mutation p.A517T 0.32 tolerated(0.21) probably_damaging(1) TCGA-A6-3809-01 22 36693051 36693051 C T MYH9 Missense_Mutation p.R1037H 0.12 possibly_damaging(0.781) TCGA-A6-3809-01 22 37466579 37466579 C - TMPRSS6 Frame_Shift_Del p.A605Pfs*8 0.25 TCGA-A6-3809-01 22 37888508 37888508 G - CARD10 Frame_Shift_Del p.K896Rfs*9 0.18 TCGA-A6-3809-01 22 38027067 38027067 C T GGA1 Silent p.L497L 0.45 TCGA-A6-3809-01 22 38336844 38336844 G A MICALL1 3'UTR 0.33 TCGA-A6-3809-01 22 38481280 38481280 C T BAIAP2L2 3'UTR 0.28 TCGA-A6-3809-01 22 38696909 38696909 C T CSNK1E Missense_Mutation p.V129I 0.26 tolerated_low_confidence(1) benign(0.017) TCGA-A6-3809-01 22 39887385 39887385 G C MGAT3 3'UTR 0.31 TCGA-A6-3809-01 22 40816542 40816542 G - MKL1 Frame_Shift_Del p.P307Qfs*30 0.25 TCGA-A6-3809-01 22 41634884 41634884 G T CHADL Silent p.T64T 0.35 TCGA-A6-3809-01 22 41791882 41791882 C T TEF Missense_Mutation p.T277M 0.30 tolerated(0.08) possibly_damaging(0.626) TCGA-A6-3809-01 22 42114213 42114213 T - MEI1 Frame_Shift_Del p.L226Sfs*22 0.29 TCGA-A6-3809-01 22 43089136 43089136 G A A4GALT Silent p.R274R 0.39 TCGA-A6-3809-01 22 43523700 43523700 C T BIK Intron 0.27 TCGA-A6-3809-01 22 45795116 45795116 T - SMC1B Frame_Shift_Del p.K324Nfs*10 0.17 TCGA-A6-3809-01 22 50312921 50312921 C T CRELD2 Missense_Mutation p.T58M 0.26 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 22 50563843 50563845 AGG - MOV10L1 In_Frame_Del p.E532del 0.37 TCGA-A6-3809-01 22 50902985 50902985 G A SBF1 Silent p.T538T 0.48 TCGA-A6-3809-01 22 50964031 50964031 G A SCO2 Intron 0.40 TCGA-A6-3809-01 22 50988147 50988147 T C KLHDC7B Missense_Mutation p.W518R 0.27 deleterious(0.02) probably_damaging(1) TCGA-A6-3809-01 22 51135698 51135698 G - SHANK3 Frame_Shift_Del p.A447Rfs*49 0.38 TCGA-A6-3809-01 22 51169640 51169640 T C SHANK3 Missense_Mutation p.L1715P 0.17 probably_damaging(0.999) TCGA-A6-3809-01 22 51183164 51183164 C T ACR Silent p.G265G 0.23 TCGA-A6-3809-01 2 100176879 100176879 T G AFF3 Missense_Mutation p.T1072P 0.26 deleterious(0.02) benign(0.159) TCGA-A6-3809-01 2 101012016 101012016 C T CHST10 Missense_Mutation p.G163D 0.20 tolerated(0.17) probably_damaging(0.988) TCGA-A6-3809-01 2 102808545 102808545 A G IL1RL2 Missense_Mutation p.K152E 0.03 tolerated(0.42) benign(0.015) TCGA-A6-3809-01 2 102836415 102836415 A G IL1RL2 Missense_Mutation p.Y310C 0.20 deleterious(0) probably_damaging(0.994) TCGA-A6-3809-01 2 103068525 103068525 A - IL18RAP Frame_Shift_Del p.N563Tfs*68 0.13 TCGA-A6-3809-01 2 108627252 108627252 A G SLC5A7 Missense_Mutation p.K560E 0.28 tolerated(0.71) benign(0.002) TCGA-A6-3809-01 2 113145800 113145800 A G RGPD8 Silent p.N1574N 0.28 TCGA-A6-3809-01 2 118866049 118866049 C T INSIG2 3'UTR 0.26 TCGA-A6-3809-01 2 120194498 120194498 C T TMEM37 Missense_Mutation p.R19W 0.22 deleterious(0.03) benign(0.014) TCGA-A6-3809-01 2 120677773 120677773 T - PTPN4 Frame_Shift_Del p.F321Lfs*7 0.25 TCGA-A6-3809-01 2 127453865 127453865 G A GYPC 3'UTR 0.32 TCGA-A6-3809-01 2 128283804 128283804 G A IWS1 5'UTR 0.35 TCGA-A6-3809-01 2 128389289 128389289 A G MYO7B Missense_Mutation p.Y1711C 0.22 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 2 128783792 128783792 G A SAP130 Silent p.N51N 0.06 TCGA-A6-3809-01 2 128917275 128917275 T C UGGT1 Missense_Mutation p.I848T 0.29 tolerated(0.06) benign(0.027) TCGA-A6-3809-01 2 129025701 129025701 C - HS6ST1 3'UTR 0.18 TCGA-A6-3809-01 2 131796452 131796452 C T ARHGEF4 Silent p.C198C 0.33 TCGA-A6-3809-01 2 131797712 131797712 G A ARHGEF4 Missense_Mutation p.E291K 0.35 deleterious(0.01) probably_damaging(0.983) TCGA-A6-3809-01 2 136029349 136029349 C G ZRANB3 Missense_Mutation p.A399P 0.12 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 2 138414372 138414372 G A THSD7B Missense_Mutation p.C1374Y 0.06 deleterious(0) unknown(0) TCGA-A6-3809-01 2 141597652 141597652 T C LRP1B Missense_Mutation p.K1706R 0.18 benign(0.292) TCGA-A6-3809-01 2 148674878 148674878 C T ACVR2A Silent p.Y233Y 0.38 TCGA-A6-3809-01 2 149227414 149227414 A G MBD5 Silent p.T634T 0.31 TCGA-A6-3809-01 2 149240816 149240816 G T MBD5 Missense_Mutation p.G886W 0.30 deleterious(0) probably_damaging(0.984) TCGA-A6-3809-01 2 150436089 150436089 C - MMADHC Frame_Shift_Del p.N77Tfs*2 0.19 TCGA-A6-3809-01 2 152482051 152482051 A G NEB Silent p.S3483S 0.34 TCGA-A6-3809-01 2 153575463 153575463 C A ARL6IP6 Missense_Mutation p.L109I 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-A6-3809-01 2 155711297 155711297 T - KCNJ3 Frame_Shift_Del p.P329Lfs*2 0.19 TCGA-A6-3809-01 2 159481804 159481804 C T PKP4 Missense_Mutation p.R340C 0.24 deleterious(0.01) possibly_damaging(0.847) TCGA-A6-3809-01 2 160901473 160901473 C G PLA2R1 Missense_Mutation p.S102T 0.30 tolerated(0.13) benign(0.016) TCGA-A6-3809-01 2 161138766 161138766 A G RBMS1 Intron 0.04 TCGA-A6-3809-01 2 162804179 162804179 C T SLC4A10 Missense_Mutation p.T736I 0.17 deleterious(0) probably_damaging(0.984) TCGA-A6-3809-01 2 164467709 164467709 C T FIGN Silent p.P211P 0.34 TCGA-A6-3809-01 2 165948814 165948814 G A SCN3A Missense_Mutation p.T1586I 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-A6-3809-01 2 167288940 167288940 A G SCN7A Missense_Mutation p.I827T 0.23 deleterious(0.05) benign(0.088) TCGA-A6-3809-01 2 167760318 167760318 G A XIRP2 Missense_Mutation p.R109H 0.30 benign(0.036) TCGA-A6-3809-01 2 167760347 167760347 A G XIRP2 Missense_Mutation p.S119G 0.08 probably_damaging(0.997) TCGA-A6-3809-01 2 168726812 168726812 G A B3GALT1 3'UTR 0.33 TCGA-A6-3809-01 2 169825956 169825956 T C ABCB11 Missense_Mutation p.T639A 0.30 deleterious(0.02) benign(0.08) TCGA-A6-3809-01 2 170667830 170667830 A G SSB Missense_Mutation p.T379A 0.04 tolerated(1) benign(0) TCGA-A6-3809-01 2 171258115 171258115 C T MYO3B Silent p.D681D 0.43 TCGA-A6-3809-01 2 173335733 173335733 T - ITGA6 Frame_Shift_Del p.F227Lfs*3 0.21 TCGA-A6-3809-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.22 TCGA-A6-3809-01 2 17699326 17699326 G - RAD51AP2 Frame_Shift_Del p.S120Hfs*8 0.25 TCGA-A6-3809-01 2 179427925 179427925 C T TTN Missense_Mutation p.R27645H 0.34 TCGA-A6-3809-01 2 179466784 179466784 C T TTN Missense_Mutation p.R18405H 0.25 TCGA-A6-3809-01 2 179548794 179548794 T G TTN Missense_Mutation p.K10913T 0.34 TCGA-A6-3809-01 2 18113308 18113308 G A KCNS3 Missense_Mutation p.V345M 0.23 deleterious(0) probably_damaging(0.97) TCGA-A6-3809-01 2 183792927 183792927 G A NCKAP1 Missense_Mutation p.A1039V 0.34 deleterious(0.01) benign(0.236) TCGA-A6-3809-01 2 185803770 185803770 A - ZNF804A 3'UTR 0.19 TCGA-A6-3809-01 2 189599652 189599652 C A DIRC1 5'UTR 0.29 TCGA-A6-3809-01 2 189849584 189849584 G A COL3A1 Missense_Mutation p.V60I 0.05 unknown(0) TCGA-A6-3809-01 2 191835414 191835414 A - STAT1 3'UTR 0.24 TCGA-A6-3809-01 2 197870540 197870540 T C ANKRD44 Missense_Mutation p.Y717C 0.31 deleterious(0.01) possibly_damaging(0.769) TCGA-A6-3809-01 2 198288581 198288581 C A SF3B1 Missense_Mutation p.S49I 0.23 tolerated_low_confidence(0.09) benign(0.005) TCGA-A6-3809-01 2 202902311 202902311 T - FZD7 3'UTR 0.24 TCGA-A6-3809-01 2 203162608 203162608 C T NOP58 Missense_Mutation p.T416I 0.02 tolerated(0.4) benign(0.002) TCGA-A6-3809-01 2 203384809 203384809 G T BMPR2 Splice_Site p.X285_splice 0.30 TCGA-A6-3809-01 2 203420002 203420002 A - BMPR2 Frame_Shift_Del p.I540Lfs*24 0.23 TCGA-A6-3809-01 2 203420717 203420717 C T BMPR2 Missense_Mutation p.H777Y 0.27 tolerated(1) benign(0.186) TCGA-A6-3809-01 2 204292187 204292187 A G ABI2 3'UTR 0.29 TCGA-A6-3809-01 2 205986425 205986425 T G PARD3B Missense_Mutation p.I306S 0.22 tolerated(0.52) benign(0.015) TCGA-A6-3809-01 2 210658521 210658521 A G UNC80 Silent p.G292G 0.05 TCGA-A6-3809-01 2 211090008 211090008 G - ACADL 5'UTR 0.28 TCGA-A6-3809-01 2 216981420 216981420 G A XRCC5 Silent p.L58L 0.32 TCGA-A6-3809-01 2 217347484 217347484 C T SMARCAL1 Silent p.Y883Y 0.23 TCGA-A6-3809-01 2 218682779 218682779 C T TNS1 Missense_Mutation p.A1322T 0.31 tolerated(0.45) benign(0.121) TCGA-A6-3809-01 2 219824837 219824837 C T CDK5R2 Missense_Mutation p.R99C 0.22 tolerated(0.09) possibly_damaging(0.898) TCGA-A6-3809-01 2 219855692 219855692 G A CRYBA2 Silent p.L110L 0.31 TCGA-A6-3809-01 2 219906212 219906212 C T CCDC108 Intron 0.06 TCGA-A6-3809-01 2 220083361 220083361 C T ABCB6 Missense_Mutation p.G12E 0.27 tolerated(0.68) benign(0.016) TCGA-A6-3809-01 2 227942700 227942700 C A COL4A4 Nonsense_Mutation p.G633* 0.30 TCGA-A6-3809-01 2 231175917 231175917 T - SP140 Frame_Shift_Del p.F779Lfs*17 0.22 TCGA-A6-3809-01 2 231927025 231927025 G A PSMD1 Missense_Mutation p.V42I 0.29 tolerated(0.95) benign(0.005) TCGA-A6-3809-01 2 235950043 235950043 G A SH3BP4 Silent p.T210T 0.20 TCGA-A6-3809-01 2 238267891 238267891 G A COL6A3 Silent p.G2104G 0.35 TCGA-A6-3809-01 2 238976790 238976790 C T SCLY Missense_Mutation p.T104I 0.30 deleterious(0) probably_damaging(0.995) TCGA-A6-3809-01 2 239974791 239974791 T C HDAC4 3'UTR 0.07 TCGA-A6-3809-01 2 24011402 24011402 G T ATAD2B Missense_Mutation p.P919Q 0.23 deleterious(0) probably_damaging(0.992) TCGA-A6-3809-01 2 24260951 24260951 A - C2orf44 Frame_Shift_Del p.C472Vfs*9 0.20 TCGA-A6-3809-01 2 242694946 242694946 C T D2HGDH Intron 0.30 TCGA-A6-3809-01 2 24428168 24428168 T C ITSN2 Splice_Site p.X1560_splice 0.18 TCGA-A6-3809-01 2 24888717 24888717 A C NCOA1 Missense_Mutation p.K63N 0.05 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 2 262562 262563 - T SH3YL1 Intron 0.26 TCGA-A6-3809-01 2 26407475 26407475 C T GAREML Missense_Mutation p.T253M 0.39 deleterious(0) probably_damaging(0.991) TCGA-A6-3809-01 2 26703836 26703836 C A OTOF Missense_Mutation p.G541C 0.06 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 2 27015101 27015101 G A CENPA Missense_Mutation p.S68N 0.25 deleterious(0.01) probably_damaging(0.925) TCGA-A6-3809-01 2 27423324 27423324 G A SLC5A6 Missense_Mutation p.L630F 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-A6-3809-01 2 27480182 27480182 C T SLC30A3 Missense_Mutation p.S206N 0.29 tolerated(0.26) possibly_damaging(0.627) TCGA-A6-3809-01 2 27530351 27530351 G A UCN 3'UTR 0.24 TCGA-A6-3809-01 2 27547392 27547392 G T MPV17 5'Flank 0.30 TCGA-A6-3809-01 2 277263 277263 T C ACP1 Missense_Mutation p.C146R 0.04 deleterious(0) possibly_damaging(0.899) TCGA-A6-3809-01 2 29225480 29225480 T G FAM179A Missense_Mutation p.L169R 0.25 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 2 29287770 29287770 G A C2orf71 Missense_Mutation p.P1278S 0.22 tolerated(0.1) benign(0.058) TCGA-A6-3809-01 2 32673990 32673990 C A BIRC6 Missense_Mutation p.L1538I 0.28 probably_damaging(0.978) TCGA-A6-3809-01 2 38298240 38298241 CA - CYP1B1 Frame_Shift_Del p.V419Gfs*11 0.24 TCGA-A6-3809-01 2 44571700 44571700 T C PREPL Missense_Mutation p.Y123C 0.27 deleterious(0) probably_damaging(0.99) TCGA-A6-3809-01 2 47177507 47177507 T C TTC7A Missense_Mutation p.F64L 0.27 tolerated(1) benign(0.001) TCGA-A6-3809-01 2 47273556 47273558 CTT - TTC7A In_Frame_Del p.F636del 0.39 TCGA-A6-3809-01 2 47748809 47748809 C T KCNK12 Missense_Mutation p.R177H 0.40 deleterious(0) possibly_damaging(0.886) TCGA-A6-3809-01 2 54159886 54159886 A G PSME4 Silent p.S323S 0.33 TCGA-A6-3809-01 2 54483111 54483111 C T TSPYL6 Missense_Mutation p.A60T 0.23 tolerated(0.1) benign(0.187) TCGA-A6-3809-01 2 55253966 55253966 T - RTN4 Frame_Shift_Del p.K423Nfs*32 0.25 TCGA-A6-3809-01 2 55561622 55561622 T - CCDC88A Frame_Shift_Del p.I779Sfs*4 0.19 TCGA-A6-3809-01 2 55777080 55777080 C T SMEK2 Silent p.S839S 0.22 TCGA-A6-3809-01 2 56411960 56411960 G A CCDC85A Missense_Mutation p.M67I 0.26 tolerated(0.51) possibly_damaging(0.706) TCGA-A6-3809-01 2 5832900 5832900 G T SOX11 Missense_Mutation p.R16L 0.35 deleterious(0.01) possibly_damaging(0.801) TCGA-A6-3809-01 2 61304123 61304123 A T KIAA1841 Missense_Mutation p.D167V 0.29 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 2 61705930 61705930 A - XPO1 3'UTR 0.27 TCGA-A6-3809-01 2 68691241 68691241 T C FBXO48 3'UTR 0.48 TCGA-A6-3809-01 2 71014926 71014926 T - FIGLA Frame_Shift_Del p.N80Ifs*9 0.18 TCGA-A6-3809-01 2 72692069 72692069 A G EXOC6B Intron 0.50 TCGA-A6-3809-01 2 72725673 72725673 C T EXOC6B Missense_Mutation p.G416D 0.16 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 2 73800081 73800081 A - ALMS1 Frame_Shift_Del p.S3694Afs*27 0.27 TCGA-A6-3809-01 2 74452077 74452077 A - SLC4A5 Frame_Shift_Del p.S1062Pfs*46 0.17 TCGA-A6-3809-01 2 74668996 74668996 T C RTKN 5'UTR 0.21 TCGA-A6-3809-01 2 74732736 74732736 A G PCGF1 Silent p.A198A 0.30 TCGA-A6-3809-01 2 74752823 74752823 A G DQX1 Missense_Mutation p.Y12H 0.21 tolerated(0.53) benign(0.001) TCGA-A6-3809-01 2 85875068 85875068 T C USP39 Missense_Mutation p.Y527H 0.07 deleterious(0) possibly_damaging(0.824) TCGA-A6-3809-01 2 86691195 86691195 C A KDM3A Missense_Mutation p.P288H 0.27 tolerated(0.33) benign(0.006) TCGA-A6-3809-01 2 90249313 90249313 G T IGKV1D-43 Missense_Mutation p.G90V 0.06 deleterious(0) probably_damaging(0.977) TCGA-A6-3809-01 2 96809678 96809678 G A DUSP2 Missense_Mutation p.R277C 0.37 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 3 101378657 101378657 C A ZBTB11 Missense_Mutation p.K672N 0.24 tolerated(0.51) benign(0.096) TCGA-A6-3809-01 3 10370623 10370623 G A ATP2B2 Missense_Mutation p.P1203S 0.32 tolerated_low_confidence(0.07) probably_damaging(0.993) TCGA-A6-3809-01 3 10377971 10377971 T C ATP2B2 Intron 0.23 TCGA-A6-3809-01 3 107492306 107492306 A G BBX Missense_Mutation p.M580V 0.26 tolerated(0.08) benign(0) TCGA-A6-3809-01 3 108072520 108072520 C T HHLA2 Missense_Mutation p.A104V 0.29 deleterious(0) probably_damaging(0.941) TCGA-A6-3809-01 3 11076275 11076276 - C SLC6A1 Frame_Shift_Ins p.K531Qfs*55 0.14 TCGA-A6-3809-01 3 113374322 113374322 A G KIAA2018 Silent p.P2069P 0.26 TCGA-A6-3809-01 3 115394864 115394864 A - GAP43 Frame_Shift_Del p.N50Mfs*33 0.29 TCGA-A6-3809-01 3 120628498 120628498 G T STXBP5L Missense_Mutation p.G25C 0.28 deleterious(0.04) possibly_damaging(0.678) TCGA-A6-3809-01 3 122439112 122439112 T C PARP14 Silent p.P1606P 0.23 TCGA-A6-3809-01 3 122439187 122439187 G A PARP14 Silent p.T1631T 0.43 TCGA-A6-3809-01 3 123687999 123687999 C T ROPN1 3'UTR 0.33 TCGA-A6-3809-01 3 124732162 124732162 G A HEG1 Missense_Mutation p.P754L 0.28 deleterious(0) possibly_damaging(0.698) TCGA-A6-3809-01 3 126137497 126137497 C T CCDC37 Missense_Mutation p.T177M 0.07 tolerated(0.14) benign(0.001) TCGA-A6-3809-01 3 126723461 126723461 G A PLXNA1 Missense_Mutation p.R509Q 0.29 tolerated(0.24) benign(0.045) TCGA-A6-3809-01 3 127649072 127649072 T C KBTBD12 Missense_Mutation p.Y480H 0.17 tolerated(0.09) benign(0.016) TCGA-A6-3809-01 3 129023651 129023651 C T HMCES Missense_Mutation p.R350C 0.23 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-A6-3809-01 3 129277377 129277377 T C PLXND1 Missense_Mutation p.Q1780R 0.23 deleterious(0) probably_damaging(0.969) TCGA-A6-3809-01 3 12977472 12977472 C T IQSEC1 Silent p.T362T 0.21 TCGA-A6-3809-01 3 130308025 130308025 G T COL6A6 Missense_Mutation p.R1406M 0.22 deleterious(0) possibly_damaging(0.54) TCGA-A6-3809-01 3 132222173 132222173 G T DNAJC13 Missense_Mutation p.G1611V 0.19 tolerated(0.12) benign(0.002) TCGA-A6-3809-01 3 132435694 132435694 C A NPHP3 Nonsense_Mutation p.G244* 0.34 TCGA-A6-3809-01 3 134214198 134214198 G A CEP63 Silent p.G12G 0.09 TCGA-A6-3809-01 3 141724318 141724318 A C TFDP2 Missense_Mutation p.L51V 0.25 deleterious(0.05) probably_damaging(0.978) TCGA-A6-3809-01 3 14755544 14755544 G C C3orf20 Missense_Mutation p.Q397H 0.22 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 3 14860796 14860796 T C FGD5 Missense_Mutation p.L73P 0.32 tolerated_low_confidence(0.1) benign(0.001) TCGA-A6-3809-01 3 148847625 148847625 T C HPS3 Missense_Mutation p.C39R 0.06 deleterious(0) probably_damaging(0.983) TCGA-A6-3809-01 3 150264519 150264521 GAG - EIF2A 5'UTR 0.30 TCGA-A6-3809-01 3 151474924 151474924 G A AADACL2 Missense_Mutation p.V250M 0.29 tolerated(0.11) benign(0.067) TCGA-A6-3809-01 3 153202377 153202377 G T C3orf79 Missense_Mutation p.R11M 0.32 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-A6-3809-01 3 155198847 155198847 G A PLCH1 Silent p.H1664H 0.32 TCGA-A6-3809-01 3 156175309 156175309 A G KCNAB1 Missense_Mutation p.Y142C 0.05 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 3 170801943 170801943 C - TNIK Splice_Site p.X1057_splice 0.16 TCGA-A6-3809-01 3 173993304 173993304 C A NLGN1 Missense_Mutation p.S282R 0.30 tolerated(0.08) probably_damaging(0.975) TCGA-A6-3809-01 3 179316503 179316503 C T MRPL47 Missense_Mutation p.R121Q 0.20 deleterious(0.02) benign(0.377) TCGA-A6-3809-01 3 184682289 184682289 G A VPS8 Missense_Mutation p.A1073T 0.31 deleterious(0.01) possibly_damaging(0.518) TCGA-A6-3809-01 3 186272228 186272228 G A TBCCD1 Silent p.S453S 0.29 TCGA-A6-3809-01 3 186790726 186790726 T C ST6GAL1 Silent p.D265D 0.31 TCGA-A6-3809-01 3 189597919 189597919 C T TP63 Intron 0.27 TCGA-A6-3809-01 3 193384101 193384101 T A OPA1 Missense_Mutation p.V914E 0.35 deleterious(0) probably_damaging(0.952) TCGA-A6-3809-01 3 194408771 194408771 G A FAM43A Missense_Mutation p.G406R 0.35 deleterious_low_confidence(0) benign(0.054) TCGA-A6-3809-01 3 195517637 195517637 A T MUC4 Missense_Mutation p.S272T 0.28 unknown(0) TCGA-A6-3809-01 3 197427335 197427335 G A KIAA0226 Intron 0.13 TCGA-A6-3809-01 3 2613101 2613101 T C CNTN4 Intron 0.28 TCGA-A6-3809-01 3 31663652 31663652 T A STT3B Nonsense_Mutation p.L464* 0.31 TCGA-A6-3809-01 3 31703523 31703523 A - OSBPL10 3'UTR 0.21 TCGA-A6-3809-01 3 32859665 32859665 G A TRIM71 Silent p.A31A 0.17 TCGA-A6-3809-01 3 32932259 32932259 C T TRIM71 Silent p.G521G 0.25 TCGA-A6-3809-01 3 33453157 33453157 T C UBP1 Missense_Mutation p.I157M 0.21 tolerated(0.07) benign(0.37) TCGA-A6-3809-01 3 37089123 37089125 GAA - MLH1 In_Frame_Del p.K618del 0.14 TCGA-A6-3809-01 3 37368889 37368889 G A GOLGA4 Missense_Mutation p.V1860I 0.28 benign(0.078) TCGA-A6-3809-01 3 38104124 38104125 AG - DLEC1 Frame_Shift_Del p.E311Afs*25 0.20 TCGA-A6-3809-01 3 38520668 38520668 T C ACVR2B Missense_Mutation p.M239T 0.31 deleterious(0) probably_damaging(0.927) TCGA-A6-3809-01 3 39543736 39543736 A G MOBP Missense_Mutation p.D59G 0.25 tolerated_low_confidence(0.49) possibly_damaging(0.45) TCGA-A6-3809-01 3 42916908 42916908 T C CYP8B1 Missense_Mutation p.D134G 0.31 tolerated(0.06) benign(0.01) TCGA-A6-3809-01 3 4358826 4358826 G T SETMAR Nonsense_Mutation p.E651* 0.24 TCGA-A6-3809-01 3 46875303 46875303 C T PRSS42 Intron 0.33 TCGA-A6-3809-01 3 48600318 48600318 G A UCN2 Silent p.I80I 0.20 TCGA-A6-3809-01 3 49689588 49689588 C T BSN Missense_Mutation p.R867C 0.24 unknown(0) TCGA-A6-3809-01 3 5021431 5021431 C - BHLHE40 Frame_Shift_Del p.A12Pfs*32 0.26 TCGA-A6-3809-01 3 50324137 50324137 G A LSMEM2 Missense_Mutation p.A69T 0.28 tolerated(0.33) benign(0.006) TCGA-A6-3809-01 3 50339733 50339733 C T HYAL1 Missense_Mutation p.G219S 0.30 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.25 TCGA-A6-3809-01 3 51425273 51425275 AAG - MANF In_Frame_Del p.K112del 0.21 TCGA-A6-3809-01 3 51433187 51433187 T C RBM15B 3'UTR 0.23 TCGA-A6-3809-01 3 52430773 52430773 T C DNAH1 Missense_Mutation p.L3857P 0.28 probably_damaging(0.999) TCGA-A6-3809-01 3 52567524 52567524 T C NT5DC2 Missense_Mutation p.H77R 0.27 tolerated(0.25) benign(0.035) TCGA-A6-3809-01 3 52964980 52964980 G A SFMBT1 Missense_Mutation p.P258S 0.28 tolerated(0.17) benign(0.005) TCGA-A6-3809-01 3 56705636 56705636 G A FAM208A Nonsense_Mutation p.R188* 0.23 TCGA-A6-3809-01 3 57443646 57443646 T - DNAH12 Frame_Shift_Del p.K1023Nfs*9 0.25 TCGA-A6-3809-01 3 58413785 58413785 T C PDHB Silent p.A352A 0.28 TCGA-A6-3809-01 3 64085103 64085103 C A PRICKLE2 Missense_Mutation p.R720M 0.27 tolerated(0.14) possibly_damaging(0.553) TCGA-A6-3809-01 3 6903476 6903476 T G GRM7 Missense_Mutation p.V134G 0.21 tolerated(0.14) probably_damaging(0.998) TCGA-A6-3809-01 3 69105843 69105843 C T UBA3 Missense_Mutation p.A335T 0.35 tolerated(0.2) benign(0.114) TCGA-A6-3809-01 3 74474087 74474087 A C CNTN3 Silent p.L121L 0.21 TCGA-A6-3809-01 3 78648001 78648001 C A ROBO1 3'UTR 0.15 TCGA-A6-3809-01 3 79639022 79639022 G T ROBO1 Missense_Mutation p.L14I 0.25 tolerated_low_confidence(0.48) benign(0.092) TCGA-A6-3809-01 3 8607159 8607159 C T LMCD1 Silent p.P255P 0.18 TCGA-A6-3809-01 3 8667969 8667969 G A SSUH2 Missense_Mutation p.A238V 0.25 tolerated(0.13) benign(0.031) TCGA-A6-3809-01 3 87018085 87018085 C T VGLL3 Missense_Mutation p.A198T 0.29 deleterious(0.03) benign(0.003) TCGA-A6-3809-01 3 87027694 87027694 G T VGLL3 Missense_Mutation p.L129I 0.21 tolerated(0.21) benign(0.184) TCGA-A6-3809-01 3 88042736 88042736 A G HTR1F 3'UTR 0.26 TCGA-A6-3809-01 3 9483366 9483366 G A SETD5 Silent p.E300E 0.28 TCGA-A6-3809-01 3 97251237 97251237 A G EPHA6 Missense_Mutation p.T746A 0.06 tolerated(0.09) benign(0.228) TCGA-A6-3809-01 3 9781417 9781417 A G BRPF1 Missense_Mutation p.D445G 0.20 tolerated(0.27) probably_damaging(0.995) TCGA-A6-3809-01 3 98235902 98235902 G T CLDND1 Missense_Mutation p.L202I 0.31 tolerated(0.09) benign(0.159) TCGA-A6-3809-01 3 99509831 99509831 A G COL8A1 Missense_Mutation p.E102G 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-A6-3809-01 4 101439052 101439052 G A EMCN Missense_Mutation p.T7I 0.23 deleterious(0) probably_damaging(0.961) TCGA-A6-3809-01 4 1019161 1019161 G - FGFRL1 3'UTR 0.26 TCGA-A6-3809-01 4 102965065 102965065 G T BANK1 Splice_Site p.X657_splice 0.25 TCGA-A6-3809-01 4 108955431 108955431 A G HADH Missense_Mutation p.Q305R 0.27 tolerated(0.33) benign(0.005) TCGA-A6-3809-01 4 108955712 108955712 C T HADH 3'UTR 0.36 TCGA-A6-3809-01 4 109546339 109546339 G A RPL34 Missense_Mutation p.A109T 0.27 tolerated(0.11) benign(0.012) TCGA-A6-3809-01 4 109767322 109767322 T - COL25A1 Frame_Shift_Del p.G497Efs*14 0.24 TCGA-A6-3809-01 4 114279456 114279456 G A ANK2 Missense_Mutation p.V3228M 0.25 benign(0.005) TCGA-A6-3809-01 4 120446741 120446741 T G PDE5A Missense_Mutation p.D581A 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-A6-3809-01 4 1219221 1219221 G A CTBP1 Silent p.S158S 0.25 TCGA-A6-3809-01 4 122749874 122749874 C T BBS7 Silent p.E562E 0.19 TCGA-A6-3809-01 4 122854003 122854003 G A TRPC3 Missense_Mutation p.T137M 0.27 tolerated(0.08) possibly_damaging(0.901) TCGA-A6-3809-01 4 123201043 123201043 C A KIAA1109 Missense_Mutation p.P2902H 0.09 possibly_damaging(0.8) TCGA-A6-3809-01 4 126242658 126242658 C T FAT4 Missense_Mutation p.R1698W 0.32 probably_damaging(0.972) TCGA-A6-3809-01 4 126373736 126373736 G A FAT4 Silent p.A3855A 0.35 TCGA-A6-3809-01 4 128608872 128608872 T - INTU Frame_Shift_Del p.F435Lfs*33 0.24 TCGA-A6-3809-01 4 134073878 134073878 C T PCDH10 Silent p.T861T 0.21 TCGA-A6-3809-01 4 134084408 134084408 C T PCDH10 Missense_Mutation p.T1025M 0.23 tolerated_low_confidence(0.21) benign(0.014) TCGA-A6-3809-01 4 138442591 138442591 G A PCDH18 Silent p.S1000S 0.20 TCGA-A6-3809-01 4 140624683 140624683 A - MGST2 Frame_Shift_Del p.K103Nfs*8 0.15 TCGA-A6-3809-01 4 142154985 142154985 G A ZNF330 Missense_Mutation p.D269N 0.34 tolerated_low_confidence(0.37) benign(0.084) TCGA-A6-3809-01 4 145567867 145567867 G A HHIP Missense_Mutation p.V14M 0.32 tolerated_low_confidence(0.27) unknown(0) TCGA-A6-3809-01 4 153247289 153247289 G A FBXW7 Missense_Mutation p.R505C 0.26 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 4 156135718 156135718 C T NPY2R Silent p.G209G 0.34 TCGA-A6-3809-01 4 158254439 158254439 C T GRIA2 Silent p.D363D 0.29 TCGA-A6-3809-01 4 159569714 159569714 A G RXFP1 Missense_Mutation p.H607R 0.24 tolerated(0.3) benign(0.002) TCGA-A6-3809-01 4 16504201 16504201 T C LDB2 3'UTR 0.19 TCGA-A6-3809-01 4 166024145 166024145 G T TMEM192 Missense_Mutation p.P44H 0.29 deleterious(0) probably_damaging(0.952) TCGA-A6-3809-01 4 166986875 166986875 C A TLL1 Missense_Mutation p.S683Y 0.32 deleterious(0) possibly_damaging(0.62) TCGA-A6-3809-01 4 167810281 167810281 C A SPOCK3 Missense_Mutation p.A200S 0.38 tolerated(0.54) benign(0.232) TCGA-A6-3809-01 4 169317271 169317285 TAGTGCTACTATTTA AGTGCTATTATTT DDX60L Splice_Site p.X1164_splice 0.10 TCGA-A6-3809-01 4 169922982 169922982 T - CBR4 Intron 0.47 TCGA-A6-3809-01 4 174450194 174450194 C - HAND2 Frame_Shift_Del p.V83Cfs*16 0.23 TCGA-A6-3809-01 4 177648996 177648997 - A VEGFC Frame_Shift_Ins p.G163Vfs*6 0.18 TCGA-A6-3809-01 4 17806104 17806104 T G DCAF16 5'UTR 0.26 TCGA-A6-3809-01 4 184241414 184241414 C T CLDN22 5'UTR 0.30 TCGA-A6-3809-01 4 185618812 185618812 C T CENPU Missense_Mutation p.V378I 0.28 tolerated(0.23) benign(0.003) TCGA-A6-3809-01 4 186544877 186544878 - C SORBS2 Frame_Shift_Ins p.A665Gfs*10 0.23 TCGA-A6-3809-01 4 187086523 187086524 - C FAM149A Frame_Shift_Ins p.L359Tfs*46 0.24 TCGA-A6-3809-01 4 187557858 187557858 C T FAT1 Missense_Mutation p.A1285T 0.32 probably_damaging(0.976) TCGA-A6-3809-01 4 20711398 20711398 T C PACRGL Splice_Site p.X122_splice 0.29 TCGA-A6-3809-01 4 2341185 2341185 C A ZFYVE28 Missense_Mutation p.E172D 0.15 deleterious(0) probably_damaging(0.995) TCGA-A6-3809-01 4 23815983 23815983 G A PPARGC1A Missense_Mutation p.R375W 0.26 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 4 26426101 26426101 T C RBPJ Silent p.L225L 0.26 TCGA-A6-3809-01 4 2695394 2695394 C - FAM193A Frame_Shift_Del p.L673Sfs*142 0.25 TCGA-A6-3809-01 4 2831446 2831446 T C SH3BP2 Silent p.P328P 0.38 TCGA-A6-3809-01 4 2932717 2932717 G A MFSD10 Intron 0.27 TCGA-A6-3809-01 4 2934416 2934416 G A MFSD10 Silent p.L148L 0.24 TCGA-A6-3809-01 4 2935623 2935623 T C MFSD10 Missense_Mutation p.T10A 0.32 tolerated(0.07) benign(0.01) TCGA-A6-3809-01 4 36083898 36083898 T C ARAP2 Missense_Mutation p.T1507A 0.31 tolerated(0.14) possibly_damaging(0.85) TCGA-A6-3809-01 4 36161044 36161044 G A ARAP2 Silent p.T842T 0.19 TCGA-A6-3809-01 4 37446704 37446704 A G KIAA1239 Missense_Mutation p.T1032A 0.30 tolerated(0.13) benign(0.441) TCGA-A6-3809-01 4 38798951 38798951 G A TLR1 Missense_Mutation p.S501L 0.04 tolerated(0.95) benign(0.039) TCGA-A6-3809-01 4 3949710 3949710 G A FAM86EP RNA 0.10 TCGA-A6-3809-01 4 39900131 39900131 C T PDS5A Missense_Mutation p.G550R 0.25 tolerated(0.12) probably_damaging(0.982) TCGA-A6-3809-01 4 40045334 40045334 G C RP11-333E13.4 RNA 0.38 TCGA-A6-3809-01 4 40121581 40121581 A - N4BP2 Frame_Shift_Del p.E619Kfs*9 0.20 TCGA-A6-3809-01 4 41987949 41987949 C A DCAF4L1 3'UTR 0.29 TCGA-A6-3809-01 4 42072579 42072579 T C SLC30A9 Missense_Mutation p.V430A 0.29 deleterious(0) probably_damaging(0.98) TCGA-A6-3809-01 4 44700615 44700615 A - GUF1 Frame_Shift_Del p.K645Sfs*2 0.32 TCGA-A6-3809-01 4 46390898 46390898 T - GABRA2 Intron 0.16 TCGA-A6-3809-01 4 53740135 53740135 C A SCFD2 3'UTR 0.20 TCGA-A6-3809-01 4 5418603 5418603 G A STK32B Silent p.A168A 0.24 TCGA-A6-3809-01 4 54218882 54218882 A C SCFD2 Missense_Mutation p.L297R 0.25 deleterious(0) probably_damaging(0.99) TCGA-A6-3809-01 4 54265973 54265973 C A FIP1L1 Missense_Mutation p.P261H 0.28 tolerated(0.09) benign(0.345) TCGA-A6-3809-01 4 54876128 54876132 AAAAC - CHIC2 3'UTR 0.36 TCGA-A6-3809-01 4 55155212 55155212 G A PDGFRA Silent p.P937P 0.21 TCGA-A6-3809-01 4 55597558 55597558 G A KIT Missense_Mutation p.A736T 0.24 tolerated(0.6) benign(0.015) TCGA-A6-3809-01 4 57182846 57182846 G A KIAA1211 Missense_Mutation p.G1060R 0.17 tolerated(0.1) probably_damaging(0.98) TCGA-A6-3809-01 4 5812141 5812141 A G EVC Missense_Mutation p.D953G 0.29 tolerated(0.06) probably_damaging(0.935) TCGA-A6-3809-01 4 65275036 65275036 G A TECRL Missense_Mutation p.R12C 0.22 tolerated_low_confidence(0.13) benign(0.01) TCGA-A6-3809-01 4 6718680 6718680 A G BLOC1S4 3'UTR 0.34 TCGA-A6-3809-01 4 68928952 68928952 A G TMPRSS11F Intron 0.21 TCGA-A6-3809-01 4 7043945 7043945 G A CCDC96 Missense_Mutation p.R241C 0.22 deleterious(0) probably_damaging(0.917) TCGA-A6-3809-01 4 7056895 7056895 T - TADA2B 3'UTR 0.21 TCGA-A6-3809-01 4 74354367 74354367 A - AFM Frame_Shift_Del p.K246Nfs*14 0.18 TCGA-A6-3809-01 4 74606325 74606325 A C IL8 5'UTR 0.11 TCGA-A6-3809-01 4 78085495 78085495 T C CCNG2 Silent p.P258P 0.26 TCGA-A6-3809-01 4 85657481 85657481 C A WDFY3 Splice_Site p.X2253_splice 0.25 TCGA-A6-3809-01 4 86916663 86916663 G A ARHGAP24 Missense_Mutation p.R619Q 0.36 tolerated(0.49) benign(0.3) TCGA-A6-3809-01 4 87797556 87797556 C T RP11-397E7.2 RNA 0.25 TCGA-A6-3809-01 4 88535889 88535889 G A DSPP Missense_Mutation p.S692N 0.29 unknown(0) TCGA-A6-3809-01 4 88767382 88767382 T C MEPE Silent p.F454F 0.32 TCGA-A6-3809-01 4 94316827 94316827 C T GRID2 Missense_Mutation p.R439C 0.31 deleterious(0) possibly_damaging(0.872) TCGA-A6-3809-01 4 9783683 9783683 G A DRD5 Silent p.A10A 0.32 TCGA-A6-3809-01 4 9785349 9785349 G C DRD5 3'UTR 0.15 TCGA-A6-3809-01 4 9785421 9785421 G T DRD5 3'UTR 0.11 TCGA-A6-3809-01 4 9828069 9828069 C A SLC2A9 Missense_Mutation p.E525D 0.34 tolerated(0.14) benign(0.071) TCGA-A6-3809-01 5 101748825 101748825 T C SLCO6A1 Missense_Mutation p.T499A 0.03 deleterious(0.01) probably_damaging(0.978) TCGA-A6-3809-01 5 10282399 10282399 G A CMBL Silent p.G156G 0.24 TCGA-A6-3809-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.26 TCGA-A6-3809-01 5 109940905 109940905 T - TMEM232 Frame_Shift_Del p.N394Ifs*13 0.19 TCGA-A6-3809-01 5 112173830 112173831 - A APC Frame_Shift_Ins p.D849Rfs*2 0.24 TCGA-A6-3809-01 5 112175676 112175677 AG - APC Frame_Shift_Del p.S1465Wfs*3 0.22 TCGA-A6-3809-01 5 112769885 112769885 C T TSSK1B Missense_Mutation p.D218N 0.35 deleterious(0.04) probably_damaging(0.978) TCGA-A6-3809-01 5 127712427 127712427 T C FBN2 Missense_Mutation p.T657A 0.23 tolerated(0.1) benign(0.165) TCGA-A6-3809-01 5 131298300 131298300 G A ACSL6 Silent p.P595P 0.33 TCGA-A6-3809-01 5 132149595 132149595 C - SOWAHA Frame_Shift_Del p.P96Rfs*75 0.14 TCGA-A6-3809-01 5 136974670 136974670 G A KLHL3 Silent p.Y397Y 0.19 TCGA-A6-3809-01 5 139193149 139193149 G - PSD2 Frame_Shift_Del p.A211Qfs*25 0.21 TCGA-A6-3809-01 5 139866560 139866560 G A ANKHD1 Silent p.T720T 0.32 TCGA-A6-3809-01 5 140174591 140174591 G A PCDHA2 Silent p.R14R 0.08 TCGA-A6-3809-01 5 140202900 140202900 G A PCDHA5 Missense_Mutation p.G514S 0.07 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-A6-3809-01 5 140208105 140208105 C T PCDHA6 Silent p.Y143Y 0.29 TCGA-A6-3809-01 5 140250948 140250948 C T PCDHA11 Missense_Mutation p.R754W 0.25 deleterious_low_confidence(0) benign(0.049) TCGA-A6-3809-01 5 140480280 140480280 T C PCDHB3 Missense_Mutation p.L16P 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.498) TCGA-A6-3809-01 5 140559360 140559360 A T PCDHB8 Missense_Mutation p.E582V 0.10 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-A6-3809-01 5 140563867 140563867 G A PCDHB16 Missense_Mutation p.R578Q 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-3809-01 5 140682445 140682445 A C SLC25A2 3'UTR 0.35 TCGA-A6-3809-01 5 140725927 140725927 C T PCDHGA3 Missense_Mutation p.A776V 0.26 tolerated_low_confidence(0.06) benign(0.196) TCGA-A6-3809-01 5 140740588 140740589 - A PCDHGB2 Frame_Shift_Ins p.T298Nfs*9 0.19 TCGA-A6-3809-01 5 140865442 140865442 C T PCDHGC4 Silent p.D234D 0.40 TCGA-A6-3809-01 5 14746043 14746043 G T ANKH Missense_Mutation p.P284H 0.39 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 5 148685961 148685961 A G AFAP1L1 Missense_Mutation p.S177G 0.34 deleterious(0.01) benign(0.027) TCGA-A6-3809-01 5 149515242 149515242 G T PDGFRB Silent p.T80T 0.07 TCGA-A6-3809-01 5 149574315 149574316 - C SLC6A7 Frame_Shift_Ins p.S22Qfs*2 0.25 TCGA-A6-3809-01 5 150497379 150497379 C A ANXA6 Missense_Mutation p.E486D 0.28 deleterious(0) benign(0.225) TCGA-A6-3809-01 5 150911165 150911165 C T FAT2 Missense_Mutation p.R3265H 0.25 benign(0.036) TCGA-A6-3809-01 5 150925118 150925118 T C FAT2 Missense_Mutation p.Q1857R 0.26 benign(0.002) TCGA-A6-3809-01 5 154181877 154181877 C A LARP1 Missense_Mutation p.A599D 0.37 deleterious(0) probably_damaging(0.961) TCGA-A6-3809-01 5 154185462 154185462 G A LARP1 Silent p.T779T 0.20 TCGA-A6-3809-01 5 157181011 157181011 G A LSM11 Splice_Site p.X197_splice 0.37 TCGA-A6-3809-01 5 158223460 158223460 T A EBF1 Missense_Mutation p.S268C 0.38 tolerated(0.17) benign(0.397) TCGA-A6-3809-01 5 15937054 15937054 G T FBXL7 Missense_Mutation p.C412F 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 5 159680627 159680627 C T CCNJL Missense_Mutation p.A356T 0.28 tolerated(0.08) probably_damaging(0.971) TCGA-A6-3809-01 5 16477792 16477792 G A FAM134B Missense_Mutation p.P327S 0.29 deleterious(0) probably_damaging(0.99) TCGA-A6-3809-01 5 16671082 16671082 G A MYO10 Silent p.H1812H 0.26 TCGA-A6-3809-01 5 168233531 168233531 C T SLIT3 Silent p.T285T 0.40 TCGA-A6-3809-01 5 171484441 171484441 T C STK10 Missense_Mutation p.Q750R 0.29 deleterious(0.05) benign(0.046) TCGA-A6-3809-01 5 176314268 176314268 T C HK3 Silent p.T557T 0.28 TCGA-A6-3809-01 5 176638303 176638303 A G NSD1 Missense_Mutation p.K968R 0.29 tolerated_low_confidence(0.06) benign(0.013) TCGA-A6-3809-01 5 177309686 177309686 C T RP11-423H2.1 RNA 0.13 TCGA-A6-3809-01 5 178559313 178559313 T - ADAMTS2 Splice_Site p.X737_splice 0.22 TCGA-A6-3809-01 5 180582660 180582660 G A OR2V2 Missense_Mutation p.A240T 0.24 tolerated(0.48) benign(0.118) TCGA-A6-3809-01 5 2748690 2748690 G A IRX2 Silent p.L378L 0.31 TCGA-A6-3809-01 5 33997325 33997325 C T AMACR Intron 0.44 TCGA-A6-3809-01 5 37138942 37138942 A G C5orf42 Missense_Mutation p.V2837A 0.39 tolerated(0.7) benign(0.005) TCGA-A6-3809-01 5 37198912 37198912 A G C5orf42 Silent p.S1188S 0.22 TCGA-A6-3809-01 5 39201963 39201963 T C FYB Missense_Mutation p.D377G 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-A6-3809-01 5 39289038 39289039 TA - C9 Nonsense_Mutation p.Y477* 0.09 TCGA-A6-3809-01 5 40955657 40955657 T C C7 Splice_Site p.X420_splice 0.24 TCGA-A6-3809-01 5 5441266 5441266 A - KIAA0947 Frame_Shift_Del p.I82Ffs*14 0.23 TCGA-A6-3809-01 5 54459980 54459980 A G GPX8 Silent p.E188E 0.24 TCGA-A6-3809-01 5 61779007 61779007 T - IPO11 Frame_Shift_Del p.F344Lfs*18 0.18 TCGA-A6-3809-01 5 6312457 6312457 A - CTD-2324F15.2 RNA 0.27 TCGA-A6-3809-01 5 64910023 64910023 T C TRIM23 Missense_Mutation p.K90E 0.04 deleterious(0) probably_damaging(0.994) TCGA-A6-3809-01 5 66445255 66445255 C T MAST4 Nonsense_Mutation p.R1045* 0.37 TCGA-A6-3809-01 5 66461819 66461819 C T MAST4 Missense_Mutation p.P2271L 0.22 benign(0.008) TCGA-A6-3809-01 5 677881 677881 C T TPPP Missense_Mutation p.V99I 0.44 tolerated(0.31) benign(0.012) TCGA-A6-3809-01 5 71494743 71494743 C A MAP1B Missense_Mutation p.P1854H 0.06 possibly_damaging(0.563) TCGA-A6-3809-01 5 72201211 72201211 C T TNPO1 Missense_Mutation p.R891C 0.39 deleterious(0) possibly_damaging(0.711) TCGA-A6-3809-01 5 72876008 72876008 A - UTP15 3'UTR 0.22 TCGA-A6-3809-01 5 74009432 74009432 C A HEXB Silent p.T291T 0.25 TCGA-A6-3809-01 5 76732211 76732212 - A WDR41 Frame_Shift_Ins p.N368* 0.29 TCGA-A6-3809-01 5 79617568 79617569 - T SPZ1 3'UTR 0.25 TCGA-A6-3809-01 5 86675571 86675571 A - RASA1 Frame_Shift_Del p.N838Mfs*4 0.24 TCGA-A6-3809-01 5 87501702 87501703 - A TMEM161B Frame_Shift_Ins p.L243Ffs*90 0.20 TCGA-A6-3809-01 5 89948311 89948311 C A GPR98 Missense_Mutation p.L1189I 0.31 possibly_damaging(0.636) TCGA-A6-3809-01 5 93872759 93872759 A G KIAA0825 Silent p.L25L 0.23 TCGA-A6-3809-01 5 93999591 93999591 C T ANKRD32 Missense_Mutation p.A449V 0.19 tolerated(0.12) benign(0.021) TCGA-A6-3809-01 5 94025225 94025225 A G ANKRD32 Missense_Mutation p.K778R 0.05 tolerated(0.56) benign(0.007) TCGA-A6-3809-01 5 94030708 94030708 C A ANKRD32 Silent p.S956S 0.32 TCGA-A6-3809-01 5 94872782 94872782 C T TTC37 Missense_Mutation p.V203I 0.31 tolerated(0.21) benign(0.001) TCGA-A6-3809-01 5 98236745 98236745 T - CHD1 Frame_Shift_Del p.K210Rfs*39 0.08 TCGA-A6-3809-01 6 100896062 100896062 G A SIM1 Silent p.H270H 0.10 TCGA-A6-3809-01 6 108676887 108676887 T - LACE1 Frame_Shift_Del p.Y150Mfs*6 0.21 TCGA-A6-3809-01 6 11094595 11094595 C T SMIM13 Silent p.L17L 0.31 TCGA-A6-3809-01 6 123318720 123318720 C - CLVS2 5'UTR 0.24 TCGA-A6-3809-01 6 127796917 127796917 C T SOGA3 Missense_Mutation p.D752N 0.26 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 6 128311967 128311967 C T PTPRK Missense_Mutation p.V1021I 0.23 tolerated(1) benign(0.064) TCGA-A6-3809-01 6 129204487 129204487 G A LAMA2 Missense_Mutation p.A33T 0.20 tolerated(0.3) unknown(0) TCGA-A6-3809-01 6 130466503 130466503 A - SAMD3 Frame_Shift_Del p.F420Lfs*4 0.16 TCGA-A6-3809-01 6 131211535 131211535 C T EPB41L2 Missense_Mutation p.R520H 0.34 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 6 135518338 135518338 A - MYB Frame_Shift_Del p.K483Nfs*8 0.26 TCGA-A6-3809-01 6 138428417 138428417 T C PERP Missense_Mutation p.S21G 0.16 tolerated(0.16) benign(0.291) TCGA-A6-3809-01 6 138601172 138601172 C A KIAA1244 Missense_Mutation p.L778M 0.10 deleterious(0.01) benign(0.142) TCGA-A6-3809-01 6 144507773 144507773 C T STX11 Silent p.D3D 0.28 TCGA-A6-3809-01 6 146240543 146240543 G A SHPRH Missense_Mutation p.R1365C 0.28 deleterious(0) probably_damaging(0.981) TCGA-A6-3809-01 6 149699678 149699678 G T TAB2 Missense_Mutation p.Q209H 0.21 tolerated(0.31) benign(0.004) TCGA-A6-3809-01 6 149862170 149862170 A C PPIL4 Missense_Mutation p.F77V 0.07 deleterious(0) benign(0.344) TCGA-A6-3809-01 6 152638018 152638018 G A SYNE1 Missense_Mutation p.A5559V 0.05 possibly_damaging(0.772) TCGA-A6-3809-01 6 153293473 153293473 T C FBXO5 Silent p.Q342Q 0.35 TCGA-A6-3809-01 6 155116233 155116233 C T SCAF8 Missense_Mutation p.A189V 0.23 deleterious(0.03) unknown(0) TCGA-A6-3809-01 6 157100008 157100008 A C ARID1B Silent p.G315G 0.12 TCGA-A6-3809-01 6 160469475 160469475 C T IGF2R Missense_Mutation p.T805M 0.25 tolerated(0.05) benign(0.149) TCGA-A6-3809-01 6 160525914 160525914 G - IGF2R Frame_Shift_Del p.G2426Efs*10 0.18 TCGA-A6-3809-01 6 1610933 1610933 G A FOXC1 Missense_Mutation p.A85T 0.06 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 6 163149300 163149300 C T PACRG Silent p.N11N 0.14 TCGA-A6-3809-01 6 16328547 16328547 G A ATXN1 5'UTR 0.17 TCGA-A6-3809-01 6 170104511 170104511 T - C6orf120 3'UTR 0.27 TCGA-A6-3809-01 6 18222307 18222307 A - KDM1B 3'UTR 0.22 TCGA-A6-3809-01 6 21596715 21596715 C - SOX4 3'UTR 0.15 TCGA-A6-3809-01 6 25600615 25600615 C T LRRC16A Missense_Mutation p.R1065W 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-A6-3809-01 6 26204873 26204873 A G HIST1H4E Translation_Start_Site p.M1? 0.40 tolerated_low_confidence(0.09) unknown(0) TCGA-A6-3809-01 6 26376836 26376836 A G BTN3A2 3'UTR 0.29 TCGA-A6-3809-01 6 27420000 27420000 A G ZNF184 Silent p.Y446Y 0.25 TCGA-A6-3809-01 6 27420268 27420268 G A ZNF184 Missense_Mutation p.T357M 0.13 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 6 27840087 27840087 G A HIST1H3I Nonsense_Mutation p.R3* 0.31 TCGA-A6-3809-01 6 28194840 28194840 C A ZSCAN9 5'UTR 0.28 TCGA-A6-3809-01 6 28294089 28294089 C A ZSCAN31 Missense_Mutation p.A359S 0.29 tolerated(0.29) possibly_damaging(0.514) TCGA-A6-3809-01 6 2893725 2893725 T C SERPINB9 Missense_Mutation p.N163D 0.30 deleterious(0.01) possibly_damaging(0.572) TCGA-A6-3809-01 6 30038956 30038956 G A RNF39 Missense_Mutation p.R399C 0.30 deleterious(0.01) benign(0.133) TCGA-A6-3809-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.30 TCGA-A6-3809-01 6 30627841 30627841 G A DHX16 Missense_Mutation p.R575C 0.40 deleterious(0) unknown(0) TCGA-A6-3809-01 6 30688217 30688217 A - TUBB 5'UTR 0.32 TCGA-A6-3809-01 6 31612931 31612931 C G BAG6 Silent p.R393R 0.23 TCGA-A6-3809-01 6 31744540 31744540 A G VWA7 Missense_Mutation p.V6A 0.25 tolerated_low_confidence(0.24) benign(0.008) TCGA-A6-3809-01 6 31779656 31779656 C T HSPA1L Missense_Mutation p.A32T 0.27 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-A6-3809-01 6 31926150 31926150 T - NELFE Frame_Shift_Del p.K25Rfs*8 0.25 TCGA-A6-3809-01 6 32053673 32053673 G A TNXB Missense_Mutation p.P1001L 0.31 benign(0.021) TCGA-A6-3809-01 6 33382921 33382921 G T PHF1 Missense_Mutation p.Q413H 0.34 tolerated(0.12) possibly_damaging(0.549) TCGA-A6-3809-01 6 33655304 33655304 G A ITPR3 Missense_Mutation p.R2076H 0.21 tolerated(0.1) benign(0.002) TCGA-A6-3809-01 6 34256646 34256646 C T NUDT3 Missense_Mutation p.V135M 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-A6-3809-01 6 348140 348140 G A DUSP22 Missense_Mutation p.A101T 0.22 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 6 34826643 34826643 C A UHRF1BP1 Missense_Mutation p.A837D 0.40 deleterious(0.01) probably_damaging(0.961) TCGA-A6-3809-01 6 35393950 35393950 C T PPARD 3'UTR 0.36 TCGA-A6-3809-01 6 35773463 35773463 C T LHFPL5 Missense_Mutation p.P6S 0.27 deleterious_low_confidence(0.03) benign(0.063) TCGA-A6-3809-01 6 37426525 37426525 T C CMTR1 Silent p.P305P 0.40 TCGA-A6-3809-01 6 38840790 38840790 G A DNAH8 Missense_Mutation p.R2232H 0.28 probably_damaging(0.999) TCGA-A6-3809-01 6 40400570 40400570 A - LRFN2 Frame_Shift_Del p.S95Pfs*37 0.19 TCGA-A6-3809-01 6 41554746 41554746 G T FOXP4 Splice_Site p.X171_splice 0.08 TCGA-A6-3809-01 6 41658930 41658930 G A TFEB Missense_Mutation p.R8C 0.28 deleterious(0) unknown(0) TCGA-A6-3809-01 6 42974224 42974224 G A PPP2R5D Silent p.Q43Q 0.39 TCGA-A6-3809-01 6 43013037 43013037 T C CUL7 Missense_Mutation p.Y1073C 0.05 tolerated(0.13) probably_damaging(0.944) TCGA-A6-3809-01 6 44280968 44280968 T A AARS2 Silent p.S31S 0.44 TCGA-A6-3809-01 6 45405710 45405710 G A RUNX2 Missense_Mutation p.V203I 0.19 tolerated(0.05) probably_damaging(0.996) TCGA-A6-3809-01 6 50682949 50682949 G T TFAP2D Nonsense_Mutation p.E54* 0.26 TCGA-A6-3809-01 6 51491843 51491843 G A PKHD1 Missense_Mutation p.R3913C 0.35 tolerated(0.2) benign(0.001) TCGA-A6-3809-01 6 51524689 51524689 A G PKHD1 Missense_Mutation p.V3412A 0.25 deleterious(0.01) benign(0.08) TCGA-A6-3809-01 6 51712676 51712676 A G PKHD1 Silent p.C2668C 0.36 TCGA-A6-3809-01 6 52843314 52843314 G - GSTA4 Frame_Shift_Del p.P208Lfs*6 0.23 TCGA-A6-3809-01 6 57512554 57512554 T C PRIM2 3'UTR 0.06 TCGA-A6-3809-01 6 66204644 66204644 T - EYS Frame_Shift_Del p.K220Nfs*37 0.20 TCGA-A6-3809-01 6 7230422 7230422 G A RREB1 Missense_Mutation p.R697Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 6 73000445 73000445 C A RIMS1 Silent p.V1206V 0.37 TCGA-A6-3809-01 6 74207575 74207575 T C MTO1 Missense_Mutation p.S665P 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-A6-3809-01 6 79698055 79698055 A G PHIP Silent p.H777H 0.47 TCGA-A6-3809-01 6 8097682 8097682 T C EEF1E1 Missense_Mutation p.N36D 0.28 tolerated(0.09) benign(0.008) TCGA-A6-3809-01 6 83767698 83767698 G A UBE3D Missense_Mutation p.P41S 0.16 tolerated(0.1) possibly_damaging(0.725) TCGA-A6-3809-01 6 83806724 83806724 A T DOPEY1 Missense_Mutation p.S10C 0.17 deleterious(0.01) probably_damaging(0.918) TCGA-A6-3809-01 6 83862037 83862037 A T DOPEY1 Missense_Mutation p.N2027I 0.21 deleterious(0.02) benign(0.025) TCGA-A6-3809-01 6 8421028 8421028 G A SLC35B3 Missense_Mutation p.A203V 0.23 tolerated(0.17) benign(0.268) TCGA-A6-3809-01 6 84234459 84234459 T G PRSS35 3'UTR 0.42 TCGA-A6-3809-01 6 84799374 84799375 - T MRAP2 3'UTR 0.40 TCGA-A6-3809-01 6 88066067 88066067 G A C6orf163 Missense_Mutation p.E134K 0.26 deleterious(0.01) possibly_damaging(0.668) TCGA-A6-3809-01 6 88374568 88374568 C T ORC3 Silent p.D648D 0.08 TCGA-A6-3809-01 6 89967594 89967594 A G GABRR2 Missense_Mutation p.L398P 0.26 tolerated(0.24) benign(0.006) TCGA-A6-3809-01 6 89978955 89978955 T C GABRR2 Splice_Site p.X97_splice 0.21 TCGA-A6-3809-01 6 94129051 94129051 A - EPHA7 Frame_Shift_Del p.Q4Kfs*97 0.25 TCGA-A6-3809-01 6 97246258 97246258 A - GPR63 3'UTR 0.40 TCGA-A6-3809-01 7 100085906 100085906 G - NYAP1 Frame_Shift_Del p.N190Tfs*13 0.20 TCGA-A6-3809-01 7 100486697 100486697 C - UFSP1 Frame_Shift_Del p.D66Tfs*14 0.30 TCGA-A6-3809-01 7 100488341 100488341 A G ACHE 3'UTR 0.24 TCGA-A6-3809-01 7 100816585 100816585 T C NAT16 Missense_Mutation p.T177A 0.24 tolerated(0.19) benign(0.029) TCGA-A6-3809-01 7 103244911 103244911 G A RELN Missense_Mutation p.R1010C 0.37 deleterious(0) probably_damaging(0.95) TCGA-A6-3809-01 7 105148864 105148864 T - PUS7 Frame_Shift_Del p.K32Nfs*9 0.20 TCGA-A6-3809-01 7 107114796 107114796 T A GPR22 Silent p.P97P 0.34 TCGA-A6-3809-01 7 108155376 108155376 C T PNPLA8 Missense_Mutation p.R187H 0.26 tolerated(0.18) benign(0.001) TCGA-A6-3809-01 7 108209879 108209879 C T THAP5 Intron 0.32 TCGA-A6-3809-01 7 108524238 108524238 C T C7orf66 Silent p.L58L 0.29 TCGA-A6-3809-01 7 110763443 110763443 C A LRRN3 Missense_Mutation p.D205E 0.29 tolerated(0.11) benign(0.094) TCGA-A6-3809-01 7 111400332 111400332 G A DOCK4 Missense_Mutation p.A1347V 0.21 deleterious(0.04) possibly_damaging(0.714) TCGA-A6-3809-01 7 117432149 117432149 G A CTTNBP2 Silent p.G367G 0.27 TCGA-A6-3809-01 7 123185668 123185668 A G NDUFA5 Silent p.L82L 0.32 TCGA-A6-3809-01 7 124387107 124387107 G A GPR37 Silent p.Y438Y 0.17 TCGA-A6-3809-01 7 127255374 127255374 A C PAX4 Intron 0.38 TCGA-A6-3809-01 7 128117189 128117189 A G METTL2B Missense_Mutation p.Q55R 0.32 tolerated(0.36) benign(0.002) TCGA-A6-3809-01 7 128517649 128517649 A C KCP RNA 0.16 TCGA-A6-3809-01 7 128645122 128645122 T C TNPO3 Missense_Mutation p.D215G 0.25 tolerated(0.15) possibly_damaging(0.561) TCGA-A6-3809-01 7 128849147 128849147 G T SMO Missense_Mutation p.A459S 0.07 tolerated(0.1) benign(0.42) TCGA-A6-3809-01 7 130417914 130417914 G A KLF14 Missense_Mutation p.A316V 0.36 tolerated_low_confidence(0.51) benign(0) TCGA-A6-3809-01 7 134678373 134678373 G A AGBL3 Missense_Mutation p.S85N 0.23 deleterious(0.03) benign(0.263) TCGA-A6-3809-01 7 134719337 134719337 T C AGBL3 Missense_Mutation p.L332P 0.32 deleterious(0) probably_damaging(0.985) TCGA-A6-3809-01 7 137096923 137096923 A C DGKI Missense_Mutation p.L939R 0.30 deleterious(0) possibly_damaging(0.801) TCGA-A6-3809-01 7 137330253 137330253 G A DGKI Missense_Mutation p.R257C 0.29 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 7 138437531 138437531 C T ATP6V0A4 Missense_Mutation p.A290T 0.40 tolerated(0.07) benign(0.1) TCGA-A6-3809-01 7 138522788 138522788 G T KIAA1549 Missense_Mutation p.P1906T 0.09 tolerated(0.12) benign(0.219) TCGA-A6-3809-01 7 139790795 139790795 A G KDM7A 3'UTR 0.44 TCGA-A6-3809-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-A6-3809-01 7 141333701 141333701 G T AGK Missense_Mutation p.G197C 0.31 deleterious(0) probably_damaging(0.992) TCGA-A6-3809-01 7 141364812 141364812 T A KIAA1147 Missense_Mutation p.D332V 0.34 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 7 141763336 141763336 T C MGAM Missense_Mutation p.V1432A 0.25 deleterious(0.01) benign(0.205) TCGA-A6-3809-01 7 143141075 143141075 C A TAS2R60 Missense_Mutation p.P177H 0.21 tolerated(0.53) possibly_damaging(0.81) TCGA-A6-3809-01 7 143417238 143417238 G T FAM115C Missense_Mutation p.Q362H 0.26 tolerated(0.19) benign(0.082) TCGA-A6-3809-01 7 146536809 146536809 G A CNTNAP2 Missense_Mutation p.G72E 0.29 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 7 1484422 1484422 G - MICALL2 Frame_Shift_Del p.G429Afs*68 0.38 TCGA-A6-3809-01 7 148516761 148516761 T C EZH2 Missense_Mutation p.N309S 0.26 tolerated(0.17) possibly_damaging(0.84) TCGA-A6-3809-01 7 148701008 148701008 C A PDIA4 Missense_Mutation p.A606S 0.32 tolerated(0.06) benign(0.43) TCGA-A6-3809-01 7 148892774 148892775 - C ZNF282 Frame_Shift_Ins p.E34Gfs*44 0.30 TCGA-A6-3809-01 7 148921671 148921671 C T ZNF282 Missense_Mutation p.R650C 0.28 deleterious(0) possibly_damaging(0.493) TCGA-A6-3809-01 7 149174833 149174833 T C ZNF746 Silent p.P178P 0.38 TCGA-A6-3809-01 7 149426364 149426364 C T KRBA1 Nonsense_Mutation p.Q571* 0.25 TCGA-A6-3809-01 7 150716238 150716238 A G ATG9B Missense_Mutation p.L396P 0.21 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 7 151893008 151893008 T C KMT2C Silent p.K1454K 0.03 TCGA-A6-3809-01 7 1538054 1538054 C T INTS1 Silent p.A473A 0.35 TCGA-A6-3809-01 7 15425131 15425131 A G AGMO Silent p.Y338Y 0.08 TCGA-A6-3809-01 7 155595717 155595717 G A SHH Silent p.D422D 0.19 TCGA-A6-3809-01 7 158542347 158542347 T C ESYT2 Missense_Mutation p.E544G 0.28 deleterious(0.03) benign(0.193) TCGA-A6-3809-01 7 1785776 1785776 C T ELFN1 Missense_Mutation p.A515V 0.28 tolerated(0.53) benign(0.003) TCGA-A6-3809-01 7 17930020 17930020 T A SNX13 Missense_Mutation p.T136S 0.24 deleterious(0.05) benign(0.023) TCGA-A6-3809-01 7 18066759 18066759 G A PRPS1L1 Missense_Mutation p.A216V 0.12 tolerated(0.13) benign(0.118) TCGA-A6-3809-01 7 20421484 20421484 C T ITGB8 Silent p.N312N 0.21 TCGA-A6-3809-01 7 20824821 20824821 C T SP8 Silent p.S205S 0.22 TCGA-A6-3809-01 7 21939668 21939669 - A DNAH11 Frame_Shift_Ins p.T4421Nfs*34 0.27 TCGA-A6-3809-01 7 2472935 2472935 C T CHST12 Missense_Mutation p.R221C 0.26 deleterious(0) probably_damaging(0.982) TCGA-A6-3809-01 7 2474188 2474188 C A CHST12 3'UTR 0.24 TCGA-A6-3809-01 7 24856229 24856229 A C OSBPL3 Missense_Mutation p.V676G 0.29 tolerated(0.34) benign(0) TCGA-A6-3809-01 7 2802520 2802520 C A GNA12 Intron 0.09 TCGA-A6-3809-01 7 29724453 29724453 G A MIR550A3 5'Flank 0.32 TCGA-A6-3809-01 7 34006113 34006113 C A BMPER Silent p.T114T 0.31 TCGA-A6-3809-01 7 42005765 42005765 G C GLI3 Missense_Mutation p.A969G 0.25 tolerated(0.28) benign(0) TCGA-A6-3809-01 7 42949393 42949393 T - C7orf25 Frame_Shift_Del p.A428Pfs*4 0.21 TCGA-A6-3809-01 7 42971991 42971991 G A MRPL32 Silent p.A2A 0.28 TCGA-A6-3809-01 7 44146316 44146316 C T AEBP1 Missense_Mutation p.P142L 0.07 deleterious_low_confidence(0) unknown(0) TCGA-A6-3809-01 7 44687285 44687285 C - OGDH Frame_Shift_Del p.L150Wfs*131 0.17 TCGA-A6-3809-01 7 45144268 45144268 C T TBRG4 Missense_Mutation p.R259Q 0.26 tolerated(0.05) possibly_damaging(0.465) TCGA-A6-3809-01 7 47384421 47384421 C T TNS3 Missense_Mutation p.R861H 0.31 tolerated(0.35) benign(0.002) TCGA-A6-3809-01 7 48685185 48685185 G A ABCA13 3'UTR 0.43 TCGA-A6-3809-01 7 50513027 50513027 A G FIGNL1 Silent p.P653P 0.20 TCGA-A6-3809-01 7 5347890 5347890 C T TNRC18 Silent p.S2918S 0.28 TCGA-A6-3809-01 7 55268933 55268933 C T EGFR Missense_Mutation p.A1000V 0.08 deleterious(0.04) benign(0.014) TCGA-A6-3809-01 7 55273131 55273131 G A EGFR Missense_Mutation p.D1152N 0.34 tolerated(0.15) benign(0.006) TCGA-A6-3809-01 7 55459508 55459508 G A LANCL2 Missense_Mutation p.R76Q 0.26 tolerated(0.09) benign(0.007) TCGA-A6-3809-01 7 5967914 5967914 G A RSPH10B Missense_Mutation p.A782V 0.15 tolerated(1) benign(0.001) TCGA-A6-3809-01 7 64004160 64004160 G A ZNF680 Missense_Mutation p.H60Y 0.18 deleterious(0.03) benign(0.089) TCGA-A6-3809-01 7 6441615 6441615 T G RAC1 Silent p.T154T 0.21 TCGA-A6-3809-01 7 64864040 64864040 A - ZNF92 Frame_Shift_Del p.K339Nfs*23 0.37 TCGA-A6-3809-01 7 71275424 71275424 G T CALN1 Silent p.A185A 0.36 TCGA-A6-3809-01 7 72178652 72178652 A C TYW1B Missense_Mutation p.F59V 0.11 deleterious(0) possibly_damaging(0.861) TCGA-A6-3809-01 7 73530183 73530185 GAG - LIMK1 In_Frame_Del p.E488del 0.33 TCGA-A6-3809-01 7 73609663 73609663 C T EIF4H 3'UTR 0.09 TCGA-A6-3809-01 7 73753205 73753205 C T CLIP2 Silent p.R183R 0.32 TCGA-A6-3809-01 7 73771634 73771634 G A CLIP2 Missense_Mutation p.A348T 0.30 deleterious(0.04) benign(0.051) TCGA-A6-3809-01 7 75617464 75617464 A G POR 3'Flank 0.26 TCGA-A6-3809-01 7 76912051 76912051 A G CCDC146 Silent p.L699L 0.05 TCGA-A6-3809-01 7 86416186 86416186 C A GRM3 Missense_Mutation p.Q360K 0.38 tolerated(1) benign(0.009) TCGA-A6-3809-01 7 87178807 87178808 CT - ABCB1 Frame_Shift_Del p.A529Pfs*27 0.35 TCGA-A6-3809-01 7 87507388 87507389 - A DBF4 Frame_Shift_Ins p.N25Kfs*11 0.32 TCGA-A6-3809-01 7 87760621 87760621 T C ADAM22 Missense_Mutation p.V288A 0.07 deleterious(0) probably_damaging(0.999) TCGA-A6-3809-01 7 87913280 87913280 A G STEAP4 Missense_Mutation p.V102A 0.30 deleterious(0) probably_damaging(0.936) TCGA-A6-3809-01 7 912169 912170 - G SUN1 Frame_Shift_Ins p.E739Gfs*27 0.21 TCGA-A6-3809-01 7 92207637 92207638 - T FAM133B Frame_Shift_Ins p.R91Kfs*13 0.33 TCGA-A6-3809-01 7 92762617 92762617 T C SAMD9L Missense_Mutation p.M890V 0.22 deleterious(0) probably_damaging(0.924) TCGA-A6-3809-01 7 92987813 92987813 T - CCDC132 3'UTR 0.13 TCGA-A6-3809-01 7 93628584 93628584 G T BET1 Missense_Mutation p.N14K 0.28 deleterious(0.04) benign(0) TCGA-A6-3809-01 7 94039064 94039064 C T COL1A2 Silent p.G322G 0.38 TCGA-A6-3809-01 7 94168276 94168276 C G CASD1 Intron 0.24 TCGA-A6-3809-01 7 97821034 97821034 G T LMTK2 Missense_Mutation p.E419D 0.25 deleterious(0.01) probably_damaging(0.915) TCGA-A6-3809-01 7 97933544 97933544 A - BAIAP2L1 Frame_Shift_Del p.F462Lfs*34 0.19 TCGA-A6-3809-01 7 98562351 98562351 A G TRRAP Missense_Mutation p.E2303G 0.22 possibly_damaging(0.597) TCGA-A6-3809-01 7 99375653 99375653 C A CYP3A4 Missense_Mutation p.W72C 0.29 deleterious(0) possibly_damaging(0.857) TCGA-A6-3809-01 8 103220246 103220246 T C RRM2B 3'UTR 0.27 TCGA-A6-3809-01 8 103277445 103277445 G A UBR5 Missense_Mutation p.T2495I 0.06 tolerated(0.19) benign(0.001) TCGA-A6-3809-01 8 10468945 10468945 G A RP1L1 Missense_Mutation p.P888L 0.28 benign(0) TCGA-A6-3809-01 8 11174058 11174058 C T MTMR9 Intron 0.23 TCGA-A6-3809-01 8 113347583 113347583 A C CSMD3 Missense_Mutation p.S2380R 0.20 deleterious(0) probably_damaging(0.959) TCGA-A6-3809-01 8 121344960 121344960 G A COL14A1 Missense_Mutation p.A1591T 0.30 tolerated(0.05) benign(0.228) TCGA-A6-3809-01 8 125464311 125464311 A G TRMT12 Silent p.G381G 0.31 TCGA-A6-3809-01 8 125498080 125498080 G A RNF139 Missense_Mutation p.A64T 0.23 tolerated(0.27) benign(0.01) TCGA-A6-3809-01 8 12883967 12883967 G - KIAA1456 3'UTR 0.24 TCGA-A6-3809-01 8 12884305 12884305 C A KIAA1456 3'UTR 0.06 TCGA-A6-3809-01 8 132052132 132052132 G A ADCY8 Nonsense_Mutation p.R150* 0.20 TCGA-A6-3809-01 8 133014920 133014920 T - EFR3A Frame_Shift_Del p.F760Lfs*4 0.20 TCGA-A6-3809-01 8 134145764 134145764 C - TG Frame_Shift_Del p.W2685Gfs*26 0.16 TCGA-A6-3809-01 8 134232990 134232990 C T WISP1 Silent p.R172R 0.27 TCGA-A6-3809-01 8 143558552 143558552 C T BAI1 Missense_Mutation p.R379C 0.23 deleterious(0) possibly_damaging(0.898) TCGA-A6-3809-01 8 143781912 143781912 G A LY6K 5'UTR 0.37 TCGA-A6-3809-01 8 145112153 145112153 G A OPLAH Missense_Mutation p.A498V 0.22 deleterious(0) possibly_damaging(0.804) TCGA-A6-3809-01 8 145623253 145623253 G T CPSF1 Silent p.G663G 0.32 TCGA-A6-3809-01 8 145732306 145732306 C - GPT Frame_Shift_Del p.L474Wfs*11 0.20 TCGA-A6-3809-01 8 1497721 1497721 C T DLGAP2 Missense_Mutation p.R288C 0.10 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 8 15480739 15480739 C T TUSC3 Missense_Mutation p.R97W 0.21 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 8 19687981 19687981 A G INTS10 Missense_Mutation p.E402G 0.05 tolerated(0.13) benign(0.003) TCGA-A6-3809-01 8 22034603 22034603 G A BMP1 Silent p.R227R 0.23 TCGA-A6-3809-01 8 24776087 24776087 G A NEFM Missense_Mutation p.A907T 0.30 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-A6-3809-01 8 27288585 27288585 G A PTK2B Intron 0.45 TCGA-A6-3809-01 8 27516866 27516866 C T SCARA3 Silent p.A393A 0.32 TCGA-A6-3809-01 8 37792653 37792653 G A GOT1L1 Missense_Mutation p.T337I 0.22 deleterious(0) probably_damaging(0.941) TCGA-A6-3809-01 8 39142389 39142389 G A ADAM32 3'UTR 0.25 TCGA-A6-3809-01 8 39843250 39843250 T - IDO2 Intron 0.12 TCGA-A6-3809-01 8 41542193 41542193 G A ANK1 Missense_Mutation p.T1510I 0.33 deleterious(0.01) benign(0.302) TCGA-A6-3809-01 8 48749052 48749052 T C PRKDC Missense_Mutation p.T2599A 0.20 benign(0.024) TCGA-A6-3809-01 8 48775092 48775092 C T PRKDC Missense_Mutation p.D1920N 0.14 benign(0.099) TCGA-A6-3809-01 8 52321724 52321724 C T PXDNL Silent p.A820A 0.26 TCGA-A6-3809-01 8 57078718 57078718 T - PLAG1 3'UTR 0.24 TCGA-A6-3809-01 8 61768726 61768726 A G CHD7 Missense_Mutation p.S2377G 0.25 benign(0.057) TCGA-A6-3809-01 8 67579088 67579089 - C VCPIP1 Frame_Shift_Ins p.L36Afs*51 0.26 TCGA-A6-3809-01 8 69381046 69381046 C A C8orf34 Missense_Mutation p.L243I 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-A6-3809-01 8 70541848 70541848 A G SULF1 Missense_Mutation p.S740G 0.31 deleterious(0.01) possibly_damaging(0.597) TCGA-A6-3809-01 8 73848500 73848500 C T KCNB2 Nonsense_Mutation p.R304* 0.31 TCGA-A6-3809-01 8 74005105 74005105 G A SBSPON Silent p.Y66Y 0.29 TCGA-A6-3809-01 8 81555334 81555334 C T ZNF704 Missense_Mutation p.G355R 0.32 tolerated(0.28) benign(0.034) TCGA-A6-3809-01 8 82571638 82571638 C A IMPA1 Missense_Mutation p.R320M 0.30 tolerated(0.06) probably_damaging(0.981) TCGA-A6-3809-01 8 82752139 82752139 G T SNX16 Missense_Mutation p.S28Y 0.24 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-A6-3809-01 8 86042248 86042248 C T LRRCC1 Missense_Mutation p.A574V 0.35 tolerated(1) benign(0) TCGA-A6-3809-01 8 86114461 86114461 A - E2F5 Frame_Shift_Del p.K107Sfs*11 0.10 TCGA-A6-3809-01 8 87917383 87917383 A C CNBD1 Missense_Mutation p.K78T 0.20 tolerated(0.11) benign(0.048) TCGA-A6-3809-01 8 96070126 96070126 A G NDUFAF6 Silent p.P321P 0.07 TCGA-A6-3809-01 9 100983474 100983474 C T TBC1D2 Missense_Mutation p.A339T 0.24 deleterious(0) probably_damaging(0.983) TCGA-A6-3809-01 9 101216357 101216357 C T GABBR2 Missense_Mutation p.R381Q 0.27 tolerated(0.17) benign(0.03) TCGA-A6-3809-01 9 103111501 103111501 T C TEX10 Missense_Mutation p.T49A 0.24 tolerated(0.29) benign(0) TCGA-A6-3809-01 9 104499930 104499930 C T GRIN3A Missense_Mutation p.R111H 0.32 deleterious_low_confidence(0.04) benign(0.346) TCGA-A6-3809-01 9 1051699 1051699 C T DMRT2 Missense_Mutation p.A29V 0.42 tolerated_low_confidence(0.19) unknown(0) TCGA-A6-3809-01 9 107602687 107602687 G A ABCA1 Silent p.C309C 0.29 TCGA-A6-3809-01 9 109694729 109694729 G A ZNF462 Silent p.G2005G 0.28 TCGA-A6-3809-01 9 111665923 111665923 A G IKBKAP Missense_Mutation p.I557T 0.29 deleterious(0) benign(0.392) TCGA-A6-3809-01 9 111812876 111812876 C T TMEM245 Missense_Mutation p.A651T 0.06 deleterious(0) probably_damaging(0.998) TCGA-A6-3809-01 9 111849607 111849607 T - TMEM245 Frame_Shift_Del p.K389Sfs*12 0.27 TCGA-A6-3809-01 9 112969835 112969835 G A C9orf152 Missense_Mutation p.P9S 0.23 tolerated(0.27) benign(0.22) TCGA-A6-3809-01 9 114348376 114348376 C T PTGR1 Silent p.T93T 0.35 TCGA-A6-3809-01 9 114911522 114911522 A G SUSD1 Splice_Site p.X125_splice 0.05 TCGA-A6-3809-01 9 116136304 116136304 A G HDHD3 Missense_Mutation p.W111R 0.28 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 9 116269709 116269709 T C RGS3 Missense_Mutation p.C410R 0.38 tolerated(0.11) benign(0.021) TCGA-A6-3809-01 9 117026662 117026662 G - COL27A1 Frame_Shift_Del p.E1076Sfs*7 0.31 TCGA-A6-3809-01 9 119491348 119491348 C A ASTN2 Missense_Mutation p.G799V 0.23 deleterious(0) unknown(0) TCGA-A6-3809-01 9 123624866 123624866 C A PHF19 Missense_Mutation p.G377V 0.36 tolerated(0.31) benign(0.001) TCGA-A6-3809-01 9 126118574 126118574 A G CRB2 Missense_Mutation p.Q12R 0.29 tolerated_low_confidence(1) unknown(0) TCGA-A6-3809-01 9 130630253 130630253 G T AK1 3'UTR 0.27 TCGA-A6-3809-01 9 130928357 130928357 T C CIZ1 3'UTR 0.42 TCGA-A6-3809-01 9 131021558 131021558 A G GOLGA2 Missense_Mutation p.V635A 0.42 tolerated(1) benign(0.003) TCGA-A6-3809-01 9 131468038 131468038 G C PKN3 Silent p.P97P 0.28 TCGA-A6-3809-01 9 131476550 131476550 C - PKN3 Frame_Shift_Del p.C465Afs*43 0.20 TCGA-A6-3809-01 9 133914340 133914340 C T LAMC3 Missense_Mutation p.R356C 0.12 deleterious(0) probably_damaging(0.988) TCGA-A6-3809-01 9 133945164 133945164 A T LAMC3 Missense_Mutation p.D999V 0.30 tolerated(0.32) benign(0.014) TCGA-A6-3809-01 9 134354653 134354653 T C PRRC2B Silent p.G1591G 0.06 TCGA-A6-3809-01 9 135447872 135447872 G A C9orf171 Missense_Mutation p.R313Q 0.39 tolerated(0.16) possibly_damaging(0.595) TCGA-A6-3809-01 9 135771525 135771525 A G TSC1 3'UTR 0.28 TCGA-A6-3809-01 9 136402585 136402585 G - ADAMTSL2 Frame_Shift_Del p.E52Sfs*16 0.31 TCGA-A6-3809-01 9 137293647 137293647 G A RXRA Silent p.S66S 0.25 TCGA-A6-3809-01 9 137642396 137642396 T C COL5A1 Silent p.P501P 0.29 TCGA-A6-3809-01 9 138379668 138379668 C - PPP1R26 Frame_Shift_Del p.H1106Tfs*48 0.28 TCGA-A6-3809-01 9 138441749 138441749 C A OBP2A 3'UTR 0.32 TCGA-A6-3809-01 9 138664622 138664622 C T KCNT1 Silent p.G690G 0.20 TCGA-A6-3809-01 9 139272583 139272590 CCTGGGCT - SNAPC4 Frame_Shift_Del p.E1230Gfs*16 0.10 TCGA-A6-3809-01 9 139289294 139289294 C T SNAPC4 Missense_Mutation p.A170T 0.29 tolerated(0.12) benign(0.395) TCGA-A6-3809-01 9 139564752 139564752 G - EGFL7 Frame_Shift_Del p.R184Gfs*13 0.25 TCGA-A6-3809-01 9 139728266 139728266 G A RABL6 Intron 0.21 TCGA-A6-3809-01 9 139927372 139927372 G A C9orf139 5'UTR 0.30 TCGA-A6-3809-01 9 139977114 139977114 G A UAP1L1 Missense_Mutation p.R486Q 0.18 tolerated(0.16) benign(0.027) TCGA-A6-3809-01 9 140130563 140130563 C T SLC34A3 Silent p.L499L 0.21 TCGA-A6-3809-01 9 140175274 140175274 C - TOR4A 3'UTR 0.22 TCGA-A6-3809-01 9 140196076 140196076 T C NRARP Missense_Mutation p.Y102C 0.21 deleterious(0) probably_damaging(0.996) TCGA-A6-3809-01 9 140329686 140329688 CTC - ENTPD8 In_Frame_Del p.E422del 0.28 TCGA-A6-3809-01 9 140904491 140904491 G A CACNA1B Missense_Mutation p.A708T 0.29 deleterious(0) benign(0.028) TCGA-A6-3809-01 9 18753368 18753368 C T ADAMTSL1 Silent p.C693C 0.26 TCGA-A6-3809-01 9 26842136 26842136 A - CAAP1 3'UTR 0.19 TCGA-A6-3809-01 9 26905462 26905463 - A PLAA 3'UTR 0.25 TCGA-A6-3809-01 9 27157989 27157989 G A TEK Silent p.P71P 0.20 TCGA-A6-3809-01 9 32459462 32459462 T - DDX58 Frame_Shift_Del p.K796Nfs*28 0.17 TCGA-A6-3809-01 9 34521545 34521545 T C ENHO Missense_Mutation p.N50S 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.486) TCGA-A6-3809-01 9 34723593 34723594 - T FAM205A Frame_Shift_Ins p.I1215Nfs*2 0.17 TCGA-A6-3809-01 9 34996743 34996743 C T DNAJB5 Silent p.G345G 0.20 TCGA-A6-3809-01 9 37592592 37592592 C A TOMM5 5'UTR 0.21 TCGA-A6-3809-01 9 37740196 37740196 G A FRMPD1 Silent p.E557E 0.18 TCGA-A6-3809-01 9 39176070 39176070 G A CNTNAP3 Missense_Mutation p.P316L 0.33 tolerated(0.14) benign(0.064) TCGA-A6-3809-01 9 6328890 6328890 T C TPD52L3 Missense_Mutation p.S99P 0.22 deleterious(0.03) benign(0.104) TCGA-A6-3809-01 9 70484455 70484455 T G CBWD5 Missense_Mutation p.K86N 0.12 deleterious(0) probably_damaging(0.982) TCGA-A6-3809-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.09 deleterious(0.01) possibly_damaging(0.573) TCGA-A6-3809-01 9 710976 710976 C T KANK1 Silent p.S70S 0.18 TCGA-A6-3809-01 9 71155530 71155530 A C TMEM252 Silent p.T67T 0.06 TCGA-A6-3809-01 9 72067054 72067054 G A APBA1 Missense_Mutation p.S651L 0.29 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 9 72962611 72962611 A G SMC5 Missense_Mutation p.Q916R 0.29 tolerated(0.12) benign(0) TCGA-A6-3809-01 9 77614678 77614678 A - C9orf41 Frame_Shift_Del p.F233Lfs*59 0.25 TCGA-A6-3809-01 9 79634774 79634774 C T FOXB2 Silent p.N68N 0.35 TCGA-A6-3809-01 9 86153139 86153139 G A FRMD3 Missense_Mutation p.A3V 0.29 deleterious_low_confidence(0.02) benign(0.018) TCGA-A6-3809-01 9 90501312 90501312 A G SPATA31E1 Missense_Mutation p.Q637R 0.32 tolerated(0.38) possibly_damaging(0.61) TCGA-A6-3809-01 9 91083305 91083305 A G SPIN1 Missense_Mutation p.D125G 0.32 deleterious(0.02) benign(0.379) TCGA-A6-3809-01 9 91606480 91606480 C T C9orf47 Silent p.N114N 0.11 TCGA-A6-3809-01 9 95872857 95872857 A G C9orf89 Missense_Mutation p.N53S 0.14 deleterious(0.03) benign(0.094) TCGA-A6-3809-01 9 97349727 97349727 G A FBP2 Silent p.N65N 0.23 TCGA-A6-3809-01 9 99691231 99691232 CT - NUTM2G 5'Flank 0.25 TCGA-A6-3809-01 X 100911930 100911930 G A ARMCX2 Silent p.T215T 0.24 TCGA-A6-3809-01 X 101095542 101095542 C A NXF5 Silent p.L209L 0.30 TCGA-A6-3809-01 X 101138355 101138355 C A ZMAT1 3'UTR 0.22 TCGA-A6-3809-01 X 101381392 101381392 G T TCEAL2 5'UTR 0.26 TCGA-A6-3809-01 X 101408846 101408846 A G BEX5 3'UTR 0.28 TCGA-A6-3809-01 X 101972671 101972671 C A GPRASP2 3'UTR 0.08 TCGA-A6-3809-01 X 102884879 102884879 C T TCEAL1 Missense_Mutation p.P12L 0.27 deleterious_low_confidence(0) benign(0.034) TCGA-A6-3809-01 X 106046201 106046201 G - TBC1D8B Frame_Shift_Del p.L42Sfs*19 0.25 TCGA-A6-3809-01 X 106070675 106070675 T - TBC1D8B Intron 0.24 TCGA-A6-3809-01 X 107457456 107457456 G A COL4A6 Silent p.G110G 0.33 TCGA-A6-3809-01 X 110988114 110988114 G A ALG13 Missense_Mutation p.G972S 0.04 deleterious(0.04) probably_damaging(0.998) TCGA-A6-3809-01 X 112066115 112066115 G T AMOT Silent p.P80P 0.27 TCGA-A6-3809-01 X 114357701 114357701 A G LRCH2 Missense_Mutation p.M635T 0.34 tolerated(0.12) possibly_damaging(0.801) TCGA-A6-3809-01 X 114426075 114426075 G - RBMXL3 Frame_Shift_Del p.G692Afs*282 0.30 TCGA-A6-3809-01 X 117079546 117079546 T - KLHL13 Intron 0.20 TCGA-A6-3809-01 X 119005767 119005767 C T RNF113A 5'UTR 0.18 TCGA-A6-3809-01 X 119293064 119293064 G A RHOXF2 Missense_Mutation p.G75R 0.20 deleterious(0.01) benign(0.041) TCGA-A6-3809-01 X 119504981 119504981 G A ATP1B4 Missense_Mutation p.A160T 0.34 tolerated(0.72) benign(0.252) TCGA-A6-3809-01 X 120182634 120182634 C A GLUD2 Missense_Mutation p.P366T 0.21 tolerated(0.11) benign(0.001) TCGA-A6-3809-01 X 122551311 122551312 - T GRIA3 Frame_Shift_Ins p.S522Ffs*33 0.22 TCGA-A6-3809-01 X 128649910 128649910 T - SMARCA1 Frame_Shift_Del p.T164Hfs*15 0.29 TCGA-A6-3809-01 X 129203441 129203441 G - ELF4 Frame_Shift_Del p.Q341Rfs*30 0.14 TCGA-A6-3809-01 X 129271399 129271399 T G AIFM1 Intron 0.26 TCGA-A6-3809-01 X 129343671 129343671 T C ZNF280C Silent p.P666P 0.29 TCGA-A6-3809-01 X 130411831 130411831 T - IGSF1 Frame_Shift_Del p.E779Kfs*22 0.16 TCGA-A6-3809-01 X 134481233 134481233 C A ZNF449 Missense_Mutation p.R64S 0.05 tolerated(0.11) possibly_damaging(0.543) TCGA-A6-3809-01 X 135047190 135047190 C T MMGT1 Missense_Mutation p.R130H 0.28 deleterious_low_confidence(0) unknown(0) TCGA-A6-3809-01 X 135455156 135455156 G - GPR112 Frame_Shift_Del p.D2572Tfs*24 0.16 TCGA-A6-3809-01 X 135592974 135592974 A - HTATSF1 Frame_Shift_Del p.T358Pfs*9 0.18 TCGA-A6-3809-01 X 135758817 135758818 TC - ARHGEF6 Frame_Shift_Del p.R637Kfs*10 0.22 TCGA-A6-3809-01 X 135956137 135956137 T - RBMX 3'UTR 0.12 TCGA-A6-3809-01 X 13956754 13956754 C T GPM6B 5'UTR 0.60 TCGA-A6-3809-01 X 140995937 140995937 C T MAGEC1 Missense_Mutation p.A916V 0.21 tolerated(1) unknown(0) TCGA-A6-3809-01 X 147919257 147919257 G T AFF2 Missense_Mutation p.Q391H 0.44 deleterious(0) probably_damaging(0.986) TCGA-A6-3809-01 X 149102320 149102320 G A CXorf40B 5'UTR 0.25 TCGA-A6-3809-01 X 149818284 149818284 A - MTM1 Frame_Shift_Del p.V324* 0.17 TCGA-A6-3809-01 X 152710434 152710434 C T TREX2 Missense_Mutation p.R152Q 0.07 tolerated(0.1) benign(0.102) TCGA-A6-3809-01 X 152825308 152825308 G A ATP2B3 Missense_Mutation p.R916H 0.33 deleterious(0) probably_damaging(0.964) TCGA-A6-3809-01 X 153069316 153069317 - G PDZD4 Frame_Shift_Ins p.L601Pfs*18 0.27 TCGA-A6-3809-01 X 153135900 153135900 C T L1CAM Missense_Mutation p.S250N 0.24 deleterious(0.01) possibly_damaging(0.697) TCGA-A6-3809-01 X 153141345 153141345 C T L1CAM 5'UTR 0.17 TCGA-A6-3809-01 X 153152453 153152453 A G LCA10 Silent p.P280P 0.33 TCGA-A6-3809-01 X 153219569 153219569 C T HCFC1 Silent p.T1427T 0.32 TCGA-A6-3809-01 X 153228773 153228773 G A HCFC1 Silent p.A205A 0.24 TCGA-A6-3809-01 X 153688593 153688593 C T PLXNA3 Missense_Mutation p.R24C 0.34 deleterious(0.03) benign(0.109) TCGA-A6-3809-01 X 154157922 154157922 T C F8 Silent p.K1381K 0.27 TCGA-A6-3809-01 X 15870621 15870621 A C AP1S2 Silent p.R9R 0.26 TCGA-A6-3809-01 X 18195739 18195739 T C BEND2 Missense_Mutation p.H527R 0.30 deleterious(0.01) possibly_damaging(0.781) TCGA-A6-3809-01 X 18598027 18598027 C T CDKL5 Silent p.S114S 0.22 TCGA-A6-3809-01 X 18660227 18660227 C T RS1 Missense_Mutation p.R191Q 0.33 deleterious(0.03) possibly_damaging(0.725) TCGA-A6-3809-01 X 18944693 18944693 G A PHKA2 Missense_Mutation p.A446V 0.13 deleterious(0) probably_damaging(0.997) TCGA-A6-3809-01 X 19039231 19039231 G T GPR64 Silent p.R212R 0.06 TCGA-A6-3809-01 X 23411454 23411454 A - PTCHD1 Frame_Shift_Del p.N608Ifs*6 0.19 TCGA-A6-3809-01 X 306974 306974 C T PPP2R3B Missense_Mutation p.A272T 0.16 tolerated(1) benign(0) TCGA-A6-3809-01 X 32456430 32456430 G A DMD Silent p.G1333G 0.28 TCGA-A6-3809-01 X 35820310 35820310 C A MAGEB16 5'UTR 0.20 TCGA-A6-3809-01 X 35985888 35985888 T C CXorf22 Silent p.L585L 0.17 TCGA-A6-3809-01 X 37515023 37515023 C T LANCL3 Missense_Mutation p.P219L 0.25 tolerated(0.29) benign(0.056) TCGA-A6-3809-01 X 39916479 39916479 G T BCOR Silent p.G1508G 0.05 TCGA-A6-3809-01 X 39923760 39923760 G A BCOR Missense_Mutation p.P1111S 0.25 tolerated(0.55) benign(0.201) TCGA-A6-3809-01 X 44703771 44703771 C T DUSP21 Silent p.D131D 0.06 TCGA-A6-3809-01 X 44945148 44945148 A C KDM6A Missense_Mutation p.N1158H 0.22 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 X 47775968 47775968 C T ZNF81 Silent p.S641S 0.25 TCGA-A6-3809-01 X 47835362 47835362 G T ZNF182 3'UTR 0.50 TCGA-A6-3809-01 X 48418834 48418834 T G TBC1D25 Missense_Mutation p.L513R 0.25 tolerated(0.35) benign(0.022) TCGA-A6-3809-01 X 48650601 48650601 C T GATA1 Missense_Mutation p.R191C 0.33 deleterious(0.01) benign(0.232) TCGA-A6-3809-01 X 49079431 49079431 C A CACNA1F Missense_Mutation p.S692I 0.28 deleterious(0) probably_damaging(0.984) TCGA-A6-3809-01 X 49142946 49142946 G A PPP1R3F Silent p.S598S 0.31 TCGA-A6-3809-01 X 51643299 51643299 G A MAGED1 Silent p.V678V 0.33 TCGA-A6-3809-01 X 53459253 53459253 G A HSD17B10 Missense_Mutation p.T100M 0.18 deleterious(0.02) probably_damaging(1) TCGA-A6-3809-01 X 54959740 54959740 A T PFKFB1 3'UTR 0.24 TCGA-A6-3809-01 X 57619027 57619027 C T ZXDB Silent p.N182N 0.08 TCGA-A6-3809-01 X 57936321 57936321 G A ZXDA Silent p.N178N 0.30 TCGA-A6-3809-01 X 64137678 64137678 C - ZC4H2 Frame_Shift_Del p.K221Sfs*11 0.23 TCGA-A6-3809-01 X 69626840 69626840 A G KIF4A Missense_Mutation p.D1057G 0.03 deleterious(0.02) benign(0.146) TCGA-A6-3809-01 X 70288094 70288094 G A SNX12 Silent p.D21D 0.25 TCGA-A6-3809-01 X 70832214 70832214 G A ACRC Missense_Mutation p.R587Q 0.32 unknown(0) TCGA-A6-3809-01 X 71359540 71359540 C A NHSL2 Silent p.G714G 0.33 TCGA-A6-3809-01 X 71417385 71417385 G T PIN4 3'UTR 0.30 TCGA-A6-3809-01 X 71792545 71792545 C A HDAC8 Nonsense_Mutation p.E23* 0.23 TCGA-A6-3809-01 X 74742926 74742926 C T ZDHHC15 5'UTR 0.28 TCGA-A6-3809-01 X 75648666 75648666 T C MAGEE1 Missense_Mutation p.S115P 0.39 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-A6-3809-01 X 83129028 83129028 A T CYLC1 Nonsense_Mutation p.K438* 0.26 TCGA-A6-3809-01 X 85769292 85769292 G A DACH2 Missense_Mutation p.G180S 0.30 deleterious(0) probably_damaging(1) TCGA-A6-3809-01 X 92966191 92966191 T A FAM133A 3'UTR 0.23 TCGA-A6-3809-01 X 95940088 95940088 G A DIAPH2 Missense_Mutation p.A11T 0.28 tolerated_low_confidence(0.65) unknown(0) TCGA-A6-3809-01 X 96140022 96140022 C T RPA4 Missense_Mutation p.A238V 0.27 tolerated(0.12) benign(0.033) TCGA-A6-3809-01 X 9900521 9900521 G A SHROOM2 Silent p.P1066P 0.36 TCGA-A6-3809-01 X 99925893 99925893 C - SRPX2 Frame_Shift_Del p.E438Rfs*12 0.20 TCGA-A6-3809-01 X 99956565 99956565 C T SYTL4 Missense_Mutation p.R72H 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-A6-3810-01 10 118084588 118084588 G A CCDC172 Missense_Mutation p.R22H 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-A6-3810-01 10 26243904 26243904 A C MYO3A Missense_Mutation p.K90N 0.08 tolerated(0.4) benign(0.026) TCGA-A6-3810-01 10 27702350 27702350 G A PTCHD3 Missense_Mutation p.T277M 0.17 tolerated(0.1) possibly_damaging(0.753) TCGA-A6-3810-01 10 53457374 53457374 G T CSTF2T 3'UTR 0.25 TCGA-A6-3810-01 10 53457382 53457382 G T CSTF2T 3'UTR 0.07 TCGA-A6-3810-01 10 5437414 5437414 C T TUBAL3 Missense_Mutation p.R91H 0.20 deleterious_low_confidence(0.05) benign(0.006) TCGA-A6-3810-01 10 55582210 55582210 G T PCDH15 Missense_Mutation p.P1761H 0.35 deleterious_low_confidence(0) unknown(0) TCGA-A6-3810-01 10 70136865 70136865 A T RUFY2 Intron 0.46 TCGA-A6-3810-01 10 85956299 85956299 G A CDHR1 Missense_Mutation p.G64R 0.71 deleterious(0) probably_damaging(0.996) TCGA-A6-3810-01 10 96305625 96305625 C T HELLS 5'UTR 0.03 TCGA-A6-3810-01 10 96701686 96701686 T C CYP2C9 Silent p.Y80Y 0.20 TCGA-A6-3810-01 11 100933406 100933406 C T PGR Missense_Mutation p.V662I 0.31 tolerated(0.84) benign(0.001) TCGA-A6-3810-01 11 101773407 101773407 T A ANGPTL5 Missense_Mutation p.K162I 0.19 deleterious(0.04) probably_damaging(0.986) TCGA-A6-3810-01 11 123493475 123493475 G A GRAMD1B 3'UTR 0.27 TCGA-A6-3810-01 11 125315971 125315971 G A FEZ1 3'UTR 0.37 TCGA-A6-3810-01 11 126333088 126333088 C T KIRREL3 Missense_Mutation p.G236R 0.33 tolerated(0.18) benign(0.287) TCGA-A6-3810-01 11 20066615 20066615 G A NAV2 Missense_Mutation p.E1124K 0.32 deleterious(0) probably_damaging(0.993) TCGA-A6-3810-01 11 22848856 22848856 C T SVIP Missense_Mutation p.R39Q 0.31 deleterious(0) probably_damaging(0.986) TCGA-A6-3810-01 11 43964679 43964679 G A C11orf96 Silent p.E388E 0.33 TCGA-A6-3810-01 11 47446219 47446219 T C PSMC3 Missense_Mutation p.N110S 0.24 tolerated(0.2) benign(0.001) TCGA-A6-3810-01 11 48286060 48286060 C T OR4X1 Silent p.Y216Y 0.34 TCGA-A6-3810-01 11 61520181 61520181 G A MYRF 5'UTR 0.19 TCGA-A6-3810-01 11 62494352 62494352 C A HNRNPUL2 Nonsense_Mutation p.E93* 0.13 TCGA-A6-3810-01 11 64825560 64825560 G A NAALADL1 Silent p.V116V 0.31 TCGA-A6-3810-01 11 65089888 65089888 A C CDC42EP2 3'UTR 0.32 TCGA-A6-3810-01 11 7256033 7256033 G A MIR302E RNA 0.25 TCGA-A6-3810-01 11 76867914 76867914 G T MYO7A Missense_Mutation p.G200V 0.05 deleterious(0) probably_damaging(1) TCGA-A6-3810-01 11 85435589 85435589 G A SYTL2 Silent p.F637F 0.48 TCGA-A6-3810-01 12 119419451 119419451 G A SRRM4 5'UTR 0.45 TCGA-A6-3810-01 12 122611848 122611848 G A MLXIP Silent p.K153K 0.36 TCGA-A6-3810-01 12 123682840 123682840 C T MPHOSPH9 Missense_Mutation p.R508H 0.15 tolerated(0.25) benign(0) TCGA-A6-3810-01 12 129181852 129181852 C A TMEM132C Silent p.A671A 0.21 TCGA-A6-3810-01 12 248100 248100 C T IQSEC3 Missense_Mutation p.A524V 0.08 tolerated(0.42) benign(0.005) TCGA-A6-3810-01 12 272682 272682 G A IQSEC3 Missense_Mutation p.R869H 0.60 deleterious(0) possibly_damaging(0.873) TCGA-A6-3810-01 12 32871622 32871622 C T DNM1L Missense_Mutation p.A222V 0.33 tolerated(0.12) benign(0.158) TCGA-A6-3810-01 12 40939777 40939777 A C MUC19 3'UTR 0.05 TCGA-A6-3810-01 12 55886739 55886739 T C OR6C68 Missense_Mutation p.I193T 0.12 deleterious_low_confidence(0.01) benign(0.381) TCGA-A6-3810-01 12 56625308 56625308 C T SLC39A5 Missense_Mutation p.R84W 0.29 deleterious(0.01) possibly_damaging(0.8) TCGA-A6-3810-01 12 57389126 57389126 G A GPR182 Missense_Mutation p.V45M 0.34 tolerated(0.37) benign(0.012) TCGA-A6-3810-01 12 57642900 57642900 G A STAC3 Silent p.N86N 0.05 TCGA-A6-3810-01 13 101736063 101736063 C T NALCN Silent p.P1194P 0.10 TCGA-A6-3810-01 13 102106285 102106285 C T ITGBL1 Silent p.R50R 0.06 TCGA-A6-3810-01 13 108882826 108882826 G A ABHD13 3'UTR 0.11 TCGA-A6-3810-01 13 114786902 114786902 G A RASA3 Nonsense_Mutation p.Q255* 0.12 TCGA-A6-3810-01 13 20221193 20221193 G C MPHOSPH8 Missense_Mutation p.R327T 0.03 deleterious_low_confidence(0) benign(0.159) TCGA-A6-3810-01 13 30110282 30110282 C T SLC7A1 Missense_Mutation p.R15Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-A6-3810-01 13 36886325 36886325 C T SPG20 Missense_Mutation p.V564I 0.65 deleterious(0.04) benign(0.29) TCGA-A6-3810-01 13 75860876 75860876 C G TBC1D4 3'UTR 0.09 TCGA-A6-3810-01 13 77661742 77661742 G A MYCBP2 Silent p.V3546V 0.06 TCGA-A6-3810-01 13 78216850 78216850 T A SCEL Missense_Mutation p.C653S 0.11 deleterious(0) probably_damaging(0.999) TCGA-A6-3810-01 13 94958355 94958355 C A GPC6 Missense_Mutation p.A377E 0.09 deleterious(0) benign(0.248) TCGA-A6-3810-01 14 101531862 101531862 G A MIR412 RNA 0.42 TCGA-A6-3810-01 14 26949208 26949208 G A NOVA1 Missense_Mutation p.T141I 0.22 deleterious(0.01) unknown(0) TCGA-A6-3810-01 14 51379780 51379780 A G PYGL Silent p.D529D 0.37 TCGA-A6-3810-01 14 52505463 52505463 A C NID2 Splice_Site p.X753_splice 0.16 TCGA-A6-3810-01 14 93709188 93709188 C A BTBD7 Missense_Mutation p.D944Y 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-3810-01 15 26793228 26793228 C T GABRB3 Missense_Mutation p.M378I 0.32 tolerated(0.44) benign(0.002) TCGA-A6-3810-01 15 27777783 27777783 C T GABRG3 Missense_Mutation p.A387V 0.61 tolerated(0.18) benign(0.022) TCGA-A6-3810-01 15 54305341 54305341 G A UNC13C Missense_Mutation p.E81K 0.24 tolerated_low_confidence(0.07) benign(0.002) TCGA-A6-3810-01 15 65491158 65491158 C T CILP Missense_Mutation p.R489Q 0.32 deleterious(0.04) benign(0.007) TCGA-A6-3810-01 15 67073539 67073539 A G SMAD6 Missense_Mutation p.K386R 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-3810-01 15 74467333 74467333 C T ISLR Missense_Mutation p.P45L 0.07 deleterious(0) probably_damaging(0.998) TCGA-A6-3810-01 15 83502218 83502218 G A WHAMM Missense_Mutation p.R787K 0.27 deleterious(0) probably_damaging(0.997) TCGA-A6-3810-01 15 86288060 86288060 A G AKAP13 3'UTR 0.45 TCGA-A6-3810-01 16 10861743 10861743 G T TVP23A 3'UTR 0.29 TCGA-A6-3810-01 16 1537401 1537401 C G PTX4 Missense_Mutation p.A233P 0.17 tolerated(0.28) possibly_damaging(0.555) TCGA-A6-3810-01 16 20384347 20384347 T G PDILT Missense_Mutation p.E260A 0.11 deleterious(0) probably_damaging(0.964) TCGA-A6-3810-01 16 26147536 26147536 T G HS3ST4 Missense_Mutation p.D446E 0.21 deleterious(0) possibly_damaging(0.528) TCGA-A6-3810-01 16 50322104 50322104 G A ADCY7 Missense_Mutation p.G5E 0.10 deleterious(0.01) possibly_damaging(0.873) TCGA-A6-3810-01 16 57601471 57601471 G A GPR114 Silent p.S263S 0.35 TCGA-A6-3810-01 16 58704017 58704017 C A SLC38A7 Missense_Mutation p.S429I 0.08 tolerated(0.5) probably_damaging(0.97) TCGA-A6-3810-01 17 30980960 30980960 T C MYO1D Silent p.P832P 0.21 TCGA-A6-3810-01 17 4804171 4804171 G A CHRNE Silent p.N278N 0.23 TCGA-A6-3810-01 17 60814313 60814313 G A MARCH10 Missense_Mutation p.R306C 0.19 tolerated(0.07) benign(0.002) TCGA-A6-3810-01 17 73911141 73911141 G T FBF1 Missense_Mutation p.A847D 0.18 deleterious(0.01) benign(0.176) TCGA-A6-3810-01 17 75190823 75190823 G A SEC14L1 Missense_Mutation p.R180H 0.03 deleterious(0.03) probably_damaging(0.984) TCGA-A6-3810-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.68 deleterious(0) probably_damaging(1) TCGA-A6-3810-01 17 7754539 7754539 C G KDM6B Missense_Mutation p.L1292V 0.65 possibly_damaging(0.687) TCGA-A6-3810-01 17 79639683 79639683 C T CCDC137 Silent p.H273H 0.48 TCGA-A6-3810-01 18 44559501 44559501 G A TCEB3B Missense_Mutation p.P712L 0.31 tolerated(0.13) benign(0.021) TCGA-A6-3810-01 18 59221638 59221638 G A CDH20 Missense_Mutation p.E706K 0.26 tolerated(0.68) possibly_damaging(0.683) TCGA-A6-3810-01 18 72346993 72346993 A G ZNF407 Missense_Mutation p.I1340V 0.09 tolerated(1) benign(0.003) TCGA-A6-3810-01 19 13368283 13368283 C T CACNA1A Missense_Mutation p.V1491I 0.04 possibly_damaging(0.636) TCGA-A6-3810-01 19 15839228 15839228 C A OR10H2 Silent p.A125A 0.12 TCGA-A6-3810-01 19 17104237 17104237 C T CPAMD8 Missense_Mutation p.V466M 0.38 deleterious(0.01) benign(0.397) TCGA-A6-3810-01 19 17395042 17395042 A T ANKLE1 Missense_Mutation p.K448M 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-3810-01 19 2111715 2111715 G A AP3D1 Missense_Mutation p.P967L 0.06 tolerated_low_confidence(0.07) benign(0.025) TCGA-A6-3810-01 19 37975417 37975417 G A ZNF570 Missense_Mutation p.G298E 0.20 deleterious(0.03) probably_damaging(1) TCGA-A6-3810-01 19 43762546 43762546 C T PSG9 Missense_Mutation p.D351N 0.27 tolerated(0.31) benign(0.029) TCGA-A6-3810-01 19 49253900 49253900 G A FUT1 Silent p.T213T 0.11 TCGA-A6-3810-01 19 51296986 51296986 C G ACPT Missense_Mutation p.L231V 0.05 tolerated(0.07) possibly_damaging(0.578) TCGA-A6-3810-01 19 52220321 52220321 C A HAS1 Missense_Mutation p.W276C 0.08 deleterious(0) benign(0.316) TCGA-A6-3810-01 19 52403358 52403358 C T ZNF649 Translation_Start_Site p.M1? 0.23 deleterious(0.02) benign(0.005) TCGA-A6-3810-01 19 52954742 52954742 C T ZNF578 5'Flank 0.38 TCGA-A6-3810-01 19 53058187 53058187 A T ZNF808 Missense_Mutation p.H673L 0.17 deleterious(0) benign(0.378) TCGA-A6-3810-01 19 59012676 59012676 G A SLC27A5 Missense_Mutation p.R387W 0.10 deleterious(0) probably_damaging(0.999) TCGA-A6-3810-01 19 9452459 9452459 G C ZNF559 Missense_Mutation p.R111T 0.10 tolerated(0.12) benign(0.005) TCGA-A6-3810-01 1 101706957 101706957 C T S1PR1 3'UTR 0.23 TCGA-A6-3810-01 1 11728904 11728904 C T FBXO6 Silent p.F63F 0.10 TCGA-A6-3810-01 1 1447589 1447589 G A ATAD3A 5'UTR 0.22 TCGA-A6-3810-01 1 149908223 149908223 G A MTMR11 Intron 0.17 TCGA-A6-3810-01 1 159410317 159410317 G A OR10J1 Missense_Mutation p.V257M 0.04 deleterious(0.01) possibly_damaging(0.856) TCGA-A6-3810-01 1 159923416 159923416 C T SLAMF9 Missense_Mutation p.C25Y 0.08 tolerated(0.59) benign(0.005) TCGA-A6-3810-01 1 161681929 161681929 C T FCRLA Silent p.S258S 0.24 TCGA-A6-3810-01 1 167097749 167097749 G A DUSP27 Silent p.E1127E 0.06 TCGA-A6-3810-01 1 17952454 17952454 C T ARHGEF10L Missense_Mutation p.R441W 0.24 deleterious(0.01) probably_damaging(0.978) TCGA-A6-3810-01 1 192127881 192127881 A C RGS18 Missense_Mutation p.K38N 0.17 tolerated(0.13) possibly_damaging(0.632) TCGA-A6-3810-01 1 203037713 203037713 A G PPFIA4 Missense_Mutation p.N588S 0.50 tolerated(0.56) benign(0.01) TCGA-A6-3810-01 1 205034939 205034939 C A CNTN2 Missense_Mutation p.T573N 0.57 tolerated(0.1) benign(0.189) TCGA-A6-3810-01 1 205632668 205632668 C T SLC45A3 Missense_Mutation p.R84H 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-3810-01 1 207793336 207793336 C G CR1 Missense_Mutation p.T2393S 0.03 tolerated(0.56) benign(0.094) TCGA-A6-3810-01 1 216108060 216108060 C T USH2A Missense_Mutation p.D2400N 0.26 benign(0.001) TCGA-A6-3810-01 1 216108094 216108094 G A USH2A Silent p.Y2388Y 0.16 TCGA-A6-3810-01 1 217804726 217804726 C T SPATA17 Silent p.A2A 0.07 TCGA-A6-3810-01 1 230778412 230778412 C G COG2 Missense_Mutation p.D20E 0.04 tolerated(0.56) benign(0.084) TCGA-A6-3810-01 1 248308999 248308999 C T OR2M5 Silent p.L184L 0.22 TCGA-A6-3810-01 1 32620270 32620270 G A KPNA6 Missense_Mutation p.R29Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-A6-3810-01 1 40041558 40041558 G A PABPC4 Silent p.V22V 0.05 TCGA-A6-3810-01 1 40704572 40704572 G A RLF Missense_Mutation p.E1400K 0.23 deleterious_low_confidence(0.04) benign(0.078) TCGA-A6-3810-01 1 54059906 54059906 G T GLIS1 Missense_Mutation p.R224S 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-A6-3810-01 1 71477817 71477817 G T PTGER3 Intron 0.37 TCGA-A6-3810-01 20 31394074 31394074 A G DNMT3B Silent p.Q787Q 0.07 TCGA-A6-3810-01 20 37464750 37464750 G A PPP1R16B Missense_Mutation p.R61H 0.11 tolerated(0.11) possibly_damaging(0.79) TCGA-A6-3810-01 20 42788935 42788935 C T JPH2 Silent p.S164S 0.48 TCGA-A6-3810-01 20 62195149 62195149 G A HELZ2 Missense_Mutation p.R1676C 0.15 tolerated(0.06) probably_damaging(1) TCGA-A6-3810-01 20 62421630 62421630 C T ZBTB46 Missense_Mutation p.V161M 0.41 tolerated(0.07) benign(0.426) TCGA-A6-3810-01 21 31744128 31744128 C T KRTAP13-2 Missense_Mutation p.C135Y 0.22 tolerated(1) benign(0.033) TCGA-A6-3810-01 21 33073398 33073398 A G SCAF4 Silent p.A229A 0.19 TCGA-A6-3810-01 21 45113110 45113110 C T RRP1B Missense_Mutation p.T708M 0.19 deleterious(0.04) probably_damaging(0.977) TCGA-A6-3810-01 21 45194165 45194165 G C CSTB Missense_Mutation p.S72C 0.05 deleterious(0) probably_damaging(0.982) TCGA-A6-3810-01 21 46897678 46897678 G A COL18A1 Silent p.G520G 0.44 TCGA-A6-3810-01 22 20786064 20786064 C T SCARF2 Missense_Mutation p.R101H 0.29 deleterious(0) probably_damaging(1) TCGA-A6-3810-01 22 39141718 39141718 C A SUN2 Nonsense_Mutation p.E283* 0.11 TCGA-A6-3810-01 22 39887334 39887334 G T MGAT3 3'UTR 0.05 TCGA-A6-3810-01 22 40045632 40045632 C G CACNA1I Missense_Mutation p.S565W 0.13 deleterious(0) possibly_damaging(0.664) TCGA-A6-3810-01 22 50659982 50659982 C G TUBGCP6 Missense_Mutation p.E936Q 0.56 tolerated(0.41) benign(0.187) TCGA-A6-3810-01 22 50901816 50901816 G A SBF1 Missense_Mutation p.R599C 0.47 tolerated(0.19) possibly_damaging(0.707) TCGA-A6-3810-01 2 120020821 120020821 C A STEAP3 Silent p.L468L 0.08 TCGA-A6-3810-01 2 120443260 120443260 G A TMEM177 3'Flank 0.09 TCGA-A6-3810-01 2 128366414 128366414 G A MYO7B Missense_Mutation p.M925I 0.06 tolerated(0.23) benign(0.002) TCGA-A6-3810-01 2 130910687 130910687 G A SMPD4 Missense_Mutation p.P734S 0.11 deleterious(0) probably_damaging(0.986) TCGA-A6-3810-01 2 136602189 136602189 C G MCM6 Missense_Mutation p.E759Q 0.22 tolerated(0.22) benign(0.013) TCGA-A6-3810-01 2 141250214 141250214 A C LRP1B Missense_Mutation p.I3028S 0.04 benign(0.227) TCGA-A6-3810-01 2 145157202 145157202 G A ZEB2 Missense_Mutation p.H518Y 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-A6-3810-01 2 152432808 152432808 G A NEB Missense_Mutation p.P5589S 0.28 probably_damaging(0.922) TCGA-A6-3810-01 2 167334060 167334060 C A SCN7A Missense_Mutation p.K49N 0.22 tolerated(0.32) benign(0.007) TCGA-A6-3810-01 2 170428267 170428267 A G FASTKD1 Silent p.Y91Y 0.21 TCGA-A6-3810-01 2 180307983 180307983 C T ZNF385B Silent p.P470P 0.33 TCGA-A6-3810-01 2 206058028 206058028 G A PARD3B Silent p.S646S 0.06 TCGA-A6-3810-01 2 216262550 216262550 C T FN1 Missense_Mutation p.G1124R 0.23 deleterious(0) probably_damaging(1) TCGA-A6-3810-01 2 220412346 220412346 C T TMEM198 Silent p.S95S 0.09 TCGA-A6-3810-01 2 225365093 225365093 C G CUL3 Missense_Mutation p.E533Q 0.16 deleterious(0.02) benign(0.314) TCGA-A6-3810-01 2 240921599 240921599 G C NDUFA10 Intron 0.13 TCGA-A6-3810-01 2 27801023 27801023 G A C2orf16 Silent p.T528T 0.06 TCGA-A6-3810-01 2 75118018 75118018 G A HK2 Missense_Mutation p.A902T 0.29 deleterious(0) possibly_damaging(0.605) TCGA-A6-3810-01 2 85625825 85625825 T C CAPG Silent p.A249A 0.17 TCGA-A6-3810-01 2 96789932 96789932 G A ASTL Missense_Mutation p.A318V 0.34 tolerated_low_confidence(0.31) benign(0.011) TCGA-A6-3810-01 3 105439064 105439064 G A CBLB Missense_Mutation p.R412C 0.04 deleterious(0) probably_damaging(0.999) TCGA-A6-3810-01 3 124053124 124053124 G A KALRN Missense_Mutation p.G475S 0.35 tolerated(0.37) probably_damaging(0.921) TCGA-A6-3810-01 3 125195567 125195567 C A SNX4 Missense_Mutation p.V254L 0.04 tolerated(0.65) benign(0.013) TCGA-A6-3810-01 3 150804616 150804616 A G MED12L 5'Flank 0.24 TCGA-A6-3810-01 3 155545947 155545947 G A SLC33A1 3'UTR 0.23 TCGA-A6-3810-01 3 164697179 164697179 C A SI Nonsense_Mutation p.E1819* 0.09 TCGA-A6-3810-01 3 167750610 167750610 G A GOLIM4 Missense_Mutation p.H292Y 0.31 tolerated(0.06) benign(0.273) TCGA-A6-3810-01 3 29323060 29323060 A C RBMS3 5'UTR 0.41 TCGA-A6-3810-01 3 32932671 32932671 G A TRIM71 Missense_Mutation p.V659M 0.43 deleterious(0) probably_damaging(0.997) TCGA-A6-3810-01 3 49699942 49699942 G A BSN Missense_Mutation p.R3555H 0.07 unknown(0) TCGA-A6-3810-01 3 49700528 49700528 G A BSN Missense_Mutation p.R3646Q 0.27 unknown(0) TCGA-A6-3810-01 3 67704937 67704937 G T SUCLG2 Missense_Mutation p.A25D 0.22 tolerated(0.07) benign(0.008) TCGA-A6-3810-01 3 98110009 98110009 C A OR5K3 Missense_Mutation p.T167N 0.26 deleterious(0.03) benign(0.049) TCGA-A6-3810-01 4 1164316 1164316 G A SPON2 Missense_Mutation p.R229W 0.20 deleterious(0) possibly_damaging(0.902) TCGA-A6-3810-01 4 122825612 122825612 G A TRPC3 Silent p.S706S 0.37 TCGA-A6-3810-01 4 154702620 154702620 G A SFRP2 Missense_Mutation p.R291C 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-A6-3810-01 4 164394875 164394875 G A TKTL2 Silent p.N4N 0.08 TCGA-A6-3810-01 4 166915679 166915679 T C TLL1 Missense_Mutation p.F170L 0.07 deleterious(0) probably_damaging(0.989) TCGA-A6-3810-01 4 167022213 167022213 G T TLL1 3'UTR 0.15 TCGA-A6-3810-01 4 170523746 170523746 T C NEK1 Silent p.E12E 0.35 TCGA-A6-3810-01 4 1729998 1729998 C T TACC3 Missense_Mutation p.T290I 0.06 tolerated(0.23) benign(0.025) TCGA-A6-3810-01 4 177100796 177100796 T G WDR17 3'UTR 0.26 TCGA-A6-3810-01 4 57182397 57182397 G A KIAA1211 Missense_Mutation p.R910Q 0.31 deleterious(0.01) benign(0.417) TCGA-A6-3810-01 4 72634017 72634017 C A GC Splice_Site p.X106_splice 0.07 TCGA-A6-3810-01 4 73013601 73013601 C T NPFFR2 3'UTR 0.24 TCGA-A6-3810-01 4 7820855 7820855 G C AFAP1 Nonsense_Mutation p.S257* 0.27 TCGA-A6-3810-01 4 79359767 79359767 A G FRAS1 Missense_Mutation p.Y1754C 0.13 benign(0.212) TCGA-A6-3810-01 4 81974845 81974845 G A BMP3 3'UTR 0.32 TCGA-A6-3810-01 5 112175203 112175203 A - APC Frame_Shift_Del p.I1304Mfs*4 0.18 TCGA-A6-3810-01 5 131670540 131670540 G A SLC22A4 Silent p.L392L 0.09 TCGA-A6-3810-01 5 13717570 13717570 C T DNAH5 Missense_Mutation p.A4187T 0.15 possibly_damaging(0.798) TCGA-A6-3810-01 5 140182183 140182183 C A PCDHA3 Missense_Mutation p.N467K 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-3810-01 5 140431238 140431238 G A PCDHB1 Silent p.A61A 0.49 TCGA-A6-3810-01 5 140532009 140532009 C T PCDHB6 Missense_Mutation p.S724L 0.46 tolerated(0.1) benign(0.04) TCGA-A6-3810-01 5 140559748 140559748 G A PCDHB8 Silent p.A711A 0.54 TCGA-A6-3810-01 5 178504142 178504142 A T ZNF354C Missense_Mutation p.R75S 0.43 tolerated(0.28) benign(0.086) TCGA-A6-3810-01 5 23527195 23527195 C G PRDM9 Missense_Mutation p.C666W 0.26 deleterious(0) probably_damaging(1) TCGA-A6-3810-01 5 23527376 23527376 C T PRDM9 Missense_Mutation p.R727W 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-A6-3810-01 5 43039603 43039603 C T ANXA2R Silent p.A182A 0.31 TCGA-A6-3810-01 6 111693887 111693887 T C REV3L Missense_Mutation p.M1891V 0.17 tolerated(0.52) benign(0.001) TCGA-A6-3810-01 6 123892159 123892159 A C TRDN Silent p.P47P 0.72 TCGA-A6-3810-01 6 13977543 13977543 C T RNF182 Missense_Mutation p.P65S 0.16 deleterious(0) probably_damaging(1) TCGA-A6-3810-01 6 168440794 168440794 C T KIF25 Nonsense_Mutation p.Q182* 0.31 TCGA-A6-3810-01 6 26468960 26468960 T C BTN2A1 3'UTR 0.25 TCGA-A6-3810-01 6 27420471 27420471 C G ZNF184 Missense_Mutation p.E289D 0.22 tolerated(0.18) possibly_damaging(0.817) TCGA-A6-3810-01 6 28543015 28543015 A T SCAND3 Silent p.T489T 0.15 TCGA-A6-3810-01 6 32030091 32030091 G T TNXB Nonsense_Mutation p.Y2337* 0.19 TCGA-A6-3810-01 6 32163360 32163360 G A NOTCH4 Silent p.L1956L 0.20 TCGA-A6-3810-01 6 38819404 38819404 T G DNAH8 Missense_Mutation p.V1590G 0.14 benign(0.314) TCGA-A6-3810-01 6 41048603 41048603 C T NFYA Silent p.S43S 0.15 TCGA-A6-3810-01 6 49928120 49928120 C T DEFB114 Missense_Mutation p.R32H 0.03 tolerated_low_confidence(0.55) benign(0.17) TCGA-A6-3810-01 6 56362287 56362287 C T DST Missense_Mutation p.E4082K 0.27 probably_damaging(0.999) TCGA-A6-3810-01 6 65300131 65300131 G A EYS Missense_Mutation p.R1877W 0.10 deleterious(0.02) benign(0.015) TCGA-A6-3810-01 6 74072874 74072874 G A KHDC3L Missense_Mutation p.V76M 0.63 deleterious(0) probably_damaging(0.964) TCGA-A6-3810-01 6 96656915 96656915 T A FUT9 3'UTR 0.22 TCGA-A6-3810-01 6 97702483 97702483 G A MMS22L Missense_Mutation p.H357Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-A6-3810-01 7 103969269 103969269 G C LHFPL3 Silent p.A14A 0.25 TCGA-A6-3810-01 7 12412820 12412820 C T VWDE Missense_Mutation p.R457H 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-A6-3810-01 7 141760171 141760171 G T MGAM Nonsense_Mutation p.E1374* 0.09 TCGA-A6-3810-01 7 150171163 150171163 C A GIMAP8 Missense_Mutation p.T249K 0.10 tolerated(1) benign(0.002) TCGA-A6-3810-01 7 28997486 28997486 G A AC005013.5 Intron 0.61 TCGA-A6-3810-01 7 4153025 4153025 T A SDK1 Missense_Mutation p.V1180D 0.08 deleterious(0) probably_damaging(0.962) TCGA-A6-3810-01 7 45011809 45011809 C T MYO1G Missense_Mutation p.E212K 0.03 tolerated(0.45) benign(0.003) TCGA-A6-3810-01 7 48353887 48353887 A T ABCA13 Missense_Mutation p.K3247M 0.04 probably_damaging(0.959) TCGA-A6-3810-01 7 4901458 4901458 C T PAPOLB 5'UTR 0.48 TCGA-A6-3810-01 7 95814259 95814259 C T SLC25A13 Missense_Mutation p.G334D 0.21 tolerated(0.27) benign(0.128) TCGA-A6-3810-01 8 10388961 10388961 C T PRSS55 Silent p.L168L 0.31 TCGA-A6-3810-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.23 TCGA-A6-3810-01 8 11188791 11188791 G A SLC35G5 Missense_Mutation p.R59H 0.14 deleterious(0) benign(0.031) TCGA-A6-3810-01 8 116427224 116427224 A C TRPS1 Missense_Mutation p.L971R 0.03 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-A6-3810-01 8 139164068 139164068 G A FAM135B Missense_Mutation p.R884C 0.49 tolerated_low_confidence(0.2) benign(0.005) TCGA-A6-3810-01 8 144810624 144810624 T C FAM83H Missense_Mutation p.E336G 0.22 deleterious(0.02) possibly_damaging(0.844) TCGA-A6-3810-01 8 145533492 145533492 G A HSF1 Missense_Mutation p.R133H 0.15 tolerated(0.05) benign(0.003) TCGA-A6-3810-01 8 145667486 145667486 T C TONSL Missense_Mutation p.K267E 0.08 deleterious(0) probably_damaging(0.989) TCGA-A6-3810-01 8 145701135 145701135 C T FOXH1 Missense_Mutation p.G2E 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.817) TCGA-A6-3810-01 8 41546073 41546073 G A ANK1 Missense_Mutation p.T1421M 0.34 deleterious(0) probably_damaging(0.981) TCGA-A6-3810-01 8 68130132 68130132 C T ARFGEF1 Missense_Mutation p.G1500S 0.06 deleterious(0.03) probably_damaging(0.991) TCGA-A6-3810-01 8 87423872 87423872 C A WWP1 Missense_Mutation p.T277N 0.22 tolerated(0.33) benign(0.031) TCGA-A6-3810-01 9 103054707 103054707 A G INVS Missense_Mutation p.E723G 0.33 tolerated_low_confidence(0.09) benign(0.002) TCGA-A6-3810-01 9 136083553 136083553 G A OBP2B Missense_Mutation p.R82W 0.08 deleterious(0.05) benign(0.022) TCGA-A6-3810-01 9 138439061 138439061 C T OBP2A Missense_Mutation p.R82W 0.24 deleterious(0.04) benign(0.004) TCGA-A6-3810-01 9 139371377 139371377 G T SEC16A Missense_Mutation p.P231T 0.26 deleterious(0.03) possibly_damaging(0.743) TCGA-A6-3810-01 9 140127261 140127261 G A SLC34A3 Silent p.K110K 0.39 TCGA-A6-3810-01 9 37592284 37592284 G C TOMM5 Missense_Mutation p.C82W 0.10 tolerated_low_confidence(0.21) unknown(0) TCGA-A6-3810-01 9 87549184 87549184 G A NTRK2 Missense_Mutation p.D581N 0.20 deleterious(0.02) benign(0.053) TCGA-A6-3810-01 X 142967790 142967790 A T UBE2NL 3'UTR 0.39 TCGA-A6-3810-01 X 147743553 147743553 T G AFF2 Missense_Mutation p.V102G 0.73 deleterious(0) possibly_damaging(0.459) TCGA-A6-3810-01 X 31200922 31200922 C T DMD Missense_Mutation p.A3303T 0.04 possibly_damaging(0.456) TCGA-A6-3810-01 X 46434372 46434372 C T CHST7 Missense_Mutation p.R336C 0.29 deleterious(0) probably_damaging(0.998) TCGA-A6-3810-01 X 48675832 48675832 C T HDAC6 Missense_Mutation p.R631C 0.11 deleterious(0) probably_damaging(1) TCGA-A6-3810-01 X 49063212 49063212 C T CACNA1F Missense_Mutation p.R1790H 0.13 tolerated(0.05) benign(0.072) TCGA-A6-3810-01 X 54989791 54989791 G A PFKFB1 Missense_Mutation p.S41F 0.41 possibly_damaging(0.893) TCGA-A6-3810-01 X 91131976 91131976 A G PCDH11X Missense_Mutation p.H246R 0.35 tolerated(0.76) benign(0.001) TCGA-A6-3810-01 X 91133858 91133858 G A PCDH11X Silent p.K873K 0.32 TCGA-A6-4105-01 10 105209807 105209807 A T CALHM2 5'UTR 0.36 TCGA-A6-4105-01 10 17026208 17026208 G T CUBN Missense_Mutation p.P1474H 0.53 deleterious(0) probably_damaging(1) TCGA-A6-4105-01 10 26789811 26789811 T G APBB1IP Missense_Mutation p.I75R 0.34 deleterious(0) probably_damaging(0.909) TCGA-A6-4105-01 10 53459247 53459247 C T CSTF2T Silent p.G21G 0.53 TCGA-A6-4105-01 10 7262415 7262415 C T SFMBT2 Missense_Mutation p.V430I 0.24 tolerated(0.55) benign(0.05) TCGA-A6-4105-01 10 7745294 7745294 G A ITIH2 5'UTR 0.16 TCGA-A6-4105-01 10 91203564 91203564 C T SLC16A12 Missense_Mutation p.A85T 0.22 tolerated(0.33) possibly_damaging(0.662) TCGA-A6-4105-01 10 92509172 92509172 G A HTR7 Missense_Mutation p.T240M 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-A6-4105-01 10 94712058 94712058 C T EXOC6 Missense_Mutation p.S482F 0.23 deleterious(0) probably_damaging(0.999) TCGA-A6-4105-01 10 96121492 96121492 T A NOC3L Silent p.L49L 0.48 TCGA-A6-4105-01 11 108124764 108124764 G T ATM Nonsense_Mutation p.E708* 0.48 TCGA-A6-4105-01 11 113146072 113146072 A G NCAM1 Missense_Mutation p.D896G 0.36 deleterious(0.03) benign(0.001) TCGA-A6-4105-01 11 117303114 117303114 C T DSCAML1 Silent p.Q1771Q 0.30 TCGA-A6-4105-01 11 17757730 17757730 C T KCNC1 Missense_Mutation p.P61S 0.44 tolerated(0.06) possibly_damaging(0.858) TCGA-A6-4105-01 11 428823 428823 C T ANO9 Missense_Mutation p.E307K 0.28 deleterious(0.01) probably_damaging(1) TCGA-A6-4105-01 11 47653241 47653241 C T MTCH2 Missense_Mutation p.R131H 0.45 deleterious(0.01) probably_damaging(0.957) TCGA-A6-4105-01 11 5510661 5510661 G A OR52D1 Missense_Mutation p.S242N 0.32 tolerated(0.51) benign(0.02) TCGA-A6-4105-01 11 65057327 65057327 A T POLA2 Missense_Mutation p.I410F 0.24 deleterious(0.03) benign(0.033) TCGA-A6-4105-01 11 72408438 72408438 C T ARAP1 Silent p.S961S 0.29 TCGA-A6-4105-01 11 8132438 8132438 C G RIC3 Missense_Mutation p.C306S 0.18 tolerated(0.07) benign(0.008) TCGA-A6-4105-01 11 85956242 85956242 C A EED 5'UTR 0.31 TCGA-A6-4105-01 12 101588878 101588878 T A SLC5A8 Missense_Mutation p.T178S 0.19 deleterious(0.05) benign(0.414) TCGA-A6-4105-01 12 106853147 106853147 G A POLR3B Splice_Site p.X857_splice 0.53 TCGA-A6-4105-01 12 106995090 106995090 C T RFX4 Silent p.G12G 0.17 TCGA-A6-4105-01 12 124297773 124297773 G A DNAH10 Silent p.E951E 0.48 TCGA-A6-4105-01 12 130648214 130648214 G A FZD10 Missense_Mutation p.A243T 0.12 tolerated(0.37) possibly_damaging(0.584) TCGA-A6-4105-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.62 deleterious(0) possibly_damaging(0.479) TCGA-A6-4105-01 12 40925872 40925872 A C MUC19 Intron 0.37 TCGA-A6-4105-01 12 40959322 40959322 C T MUC19 3'UTR 0.43 TCGA-A6-4105-01 12 53232893 53232893 T C KRT78 3'UTR 0.10 TCGA-A6-4105-01 12 8693543 8693543 G C CLEC4E 5'UTR 0.12 TCGA-A6-4105-01 12 91539870 91539870 C T DCN Missense_Mutation p.V349M 0.51 tolerated(0.18) benign(0) TCGA-A6-4105-01 13 101707680 101707680 G A NALCN Silent p.S1728S 0.39 TCGA-A6-4105-01 13 24520021 24520021 G A ANKRD20A19P RNA 0.14 TCGA-A6-4105-01 13 32705838 32705838 C T FRY Missense_Mutation p.A249V 0.42 tolerated(0.16) benign(0.227) TCGA-A6-4105-01 13 33316829 33316829 A G PDS5B Missense_Mutation p.H859R 0.26 tolerated(0.61) benign(0.02) TCGA-A6-4105-01 13 46544005 46544005 C G ZC3H13 Missense_Mutation p.E892Q 0.07 unknown(0) TCGA-A6-4105-01 13 66878947 66878947 T C PCDH9 Missense_Mutation p.E1185G 0.43 tolerated(0.73) benign(0.007) TCGA-A6-4105-01 14 101492104 101492104 G A MIR323A RNA 0.30 TCGA-A6-4105-01 14 102471104 102471104 G A DYNC1H1 Missense_Mutation p.M1685I 0.27 benign(0.001) TCGA-A6-4105-01 14 20854650 20854650 G A TEP1 Silent p.I939I 0.25 TCGA-A6-4105-01 14 34398289 34398289 C T EGLN3 Missense_Mutation p.A203T 0.25 tolerated(0.09) benign(0.121) TCGA-A6-4105-01 14 42361109 42361109 G A LRFN5 Missense_Mutation p.R681H 0.27 tolerated_low_confidence(0.33) benign(0.27) TCGA-A6-4105-01 14 53347994 53347994 T A FERMT2 Missense_Mutation p.Q240H 0.06 deleterious(0.02) possibly_damaging(0.855) TCGA-A6-4105-01 14 65253709 65253709 C T SPTB Missense_Mutation p.A992T 0.27 tolerated(0.43) benign(0.104) TCGA-A6-4105-01 14 70990833 70990833 G A ADAM20 Silent p.V264V 0.24 TCGA-A6-4105-01 14 76957945 76957945 G A ESRRB Missense_Mutation p.A315T 0.42 tolerated(0.18) benign(0.056) TCGA-A6-4105-01 14 95569701 95569701 T C DICER1 Silent p.S1344S 0.10 TCGA-A6-4105-01 15 101114013 101114013 A T LINS Silent p.V355V 0.18 TCGA-A6-4105-01 15 34355316 34355316 C A CHRM5 Missense_Mutation p.T133K 0.15 deleterious(0) probably_damaging(1) TCGA-A6-4105-01 15 43783914 43783914 G - TP53BP1 Frame_Shift_Del p.I109Sfs*95 0.39 TCGA-A6-4105-01 15 44952678 44952678 T G SPG11 Missense_Mutation p.S132R 0.47 deleterious(0.04) benign(0.1) TCGA-A6-4105-01 15 56144633 56144633 G C NEDD4 Missense_Mutation p.P726A 0.23 deleterious(0) probably_damaging(0.999) TCGA-A6-4105-01 15 68468877 68468877 A G PIAS1 Missense_Mutation p.K456E 0.32 deleterious(0) benign(0.152) TCGA-A6-4105-01 15 86702253 86702253 A G AGBL1 Missense_Mutation p.I116V 0.13 tolerated(0.48) benign(0.065) TCGA-A6-4105-01 16 20796340 20796340 G T ACSM3 Missense_Mutation p.A352S 0.11 deleterious(0.05) possibly_damaging(0.796) TCGA-A6-4105-01 16 50667399 50667399 G A NKD1 Missense_Mutation p.A374T 0.44 tolerated(0.25) benign(0.009) TCGA-A6-4105-01 16 74949791 74949792 - CA WDR59 Frame_Shift_Ins p.Q401Cfs*32 0.18 TCGA-A6-4105-01 17 1629745 1629745 G A WDR81 Missense_Mutation p.D498N 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-4105-01 17 26821503 26821503 T C SLC13A2 Silent p.G476G 0.36 TCGA-A6-4105-01 17 28443868 28443868 A G NSRP1 Missense_Mutation p.I3V 0.36 tolerated(0.44) benign(0.005) TCGA-A6-4105-01 17 3571929 3571929 C A TAX1BP3 5'UTR 0.58 TCGA-A6-4105-01 17 38854570 38854570 A G KRT24 Silent p.T499T 0.28 TCGA-A6-4105-01 17 39092710 39092710 G A KRT23 Missense_Mutation p.T49M 0.46 tolerated(0.13) possibly_damaging(0.466) TCGA-A6-4105-01 17 44076726 44076726 C T STH Silent p.C27C 0.41 TCGA-A6-4105-01 17 51900283 51900283 C A KIF2B 5'UTR 0.45 TCGA-A6-4105-01 17 65214735 65214735 G T HELZ Nonsense_Mutation p.Y62* 0.37 TCGA-A6-4105-01 17 70119808 70119808 C A SOX9 Missense_Mutation p.F270L 0.38 deleterious(0) probably_damaging(0.986) TCGA-A6-4105-01 17 72916509 72916509 C T USH1G Missense_Mutation p.R141H 0.31 deleterious(0.01) possibly_damaging(0.796) TCGA-A6-4105-01 17 73126904 73126904 C A NT5C Missense_Mutation p.R132M 0.44 deleterious(0) possibly_damaging(0.908) TCGA-A6-4105-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.58 deleterious(0) probably_damaging(1) TCGA-A6-4105-01 17 77924303 77924303 G A TBC1D16 Silent p.P388P 0.38 TCGA-A6-4105-01 17 78389211 78389211 G A ENDOV Intron 0.50 TCGA-A6-4105-01 17 79205769 79205769 G A ENTHD2 Silent p.S193S 0.37 TCGA-A6-4105-01 18 28671030 28671030 T C DSC2 Silent p.L145L 0.08 TCGA-A6-4105-01 18 44555118 44555118 C T TCEB3C Missense_Mutation p.V366I 0.06 tolerated(0.08) benign(0.145) TCGA-A6-4105-01 18 56586312 56586312 T C ZNF532 Missense_Mutation p.S265P 0.09 deleterious(0.01) benign(0.224) TCGA-A6-4105-01 19 12954345 12954345 C T MAST1 Missense_Mutation p.A84V 0.51 tolerated(0.09) benign(0.34) TCGA-A6-4105-01 19 13414675 13414675 G A CACNA1A Silent p.N670N 0.13 TCGA-A6-4105-01 19 17403446 17403446 A T ABHD8 3'UTR 0.23 TCGA-A6-4105-01 19 2221986 2221986 G A DOT1L Missense_Mutation p.A940T 0.22 tolerated_low_confidence(0.21) benign(0.006) TCGA-A6-4105-01 19 23544934 23544934 T C ZNF91 Missense_Mutation p.R283G 0.11 tolerated(0.34) possibly_damaging(0.454) TCGA-A6-4105-01 19 33168479 33168479 T C RGS9BP 3'UTR 0.18 TCGA-A6-4105-01 19 3435166 3435166 A T NFIC Missense_Mutation p.T307S 0.41 tolerated(0.71) benign(0.257) TCGA-A6-4105-01 19 35556233 35556233 C A HPN Silent p.G297G 0.14 TCGA-A6-4105-01 19 35786682 35786682 G A MAG Silent p.P71P 0.36 TCGA-A6-4105-01 19 38028741 38028741 C T ZNF793 Missense_Mutation p.A394V 0.22 deleterious(0.01) benign(0.005) TCGA-A6-4105-01 19 41089372 41089372 C T SHKBP1 Silent p.N343N 0.20 TCGA-A6-4105-01 19 49376893 49376893 G A PPP1R15A Missense_Mutation p.A135T 0.10 tolerated(1) probably_damaging(0.956) TCGA-A6-4105-01 19 50906749 50906749 G A POLD1 Splice_Site p.X380_splice 0.13 TCGA-A6-4105-01 19 52942095 52942095 C T ZNF534 Missense_Mutation p.T474I 0.32 deleterious(0.01) possibly_damaging(0.688) TCGA-A6-4105-01 19 54416214 54416214 G A CACNG7 Silent p.P43P 0.17 TCGA-A6-4105-01 19 54604125 54604125 G A OSCAR 5'Flank 0.26 TCGA-A6-4105-01 19 58102036 58102036 G A ZIK1 Missense_Mutation p.R286Q 0.12 tolerated(0.86) benign(0.08) TCGA-A6-4105-01 19 58572958 58572958 C T ZNF135 Missense_Mutation p.T27M 0.18 tolerated(0.09) probably_damaging(0.917) TCGA-A6-4105-01 19 9578344 9578344 C T ZNF560 Missense_Mutation p.A427T 0.49 tolerated(1) benign(0) TCGA-A6-4105-01 1 102290788 102290788 T G OLFM3 Missense_Mutation p.K129T 0.08 tolerated(0.1) benign(0.005) TCGA-A6-4105-01 1 107866920 107866920 G T NTNG1 Missense_Mutation p.C88F 0.46 deleterious(0) probably_damaging(1) TCGA-A6-4105-01 1 11182179 11182179 G T MTOR Missense_Mutation p.Q2223K 0.57 deleterious(0.01) possibly_damaging(0.825) TCGA-A6-4105-01 1 114248707 114248707 G C PHTF1 Missense_Mutation p.F492L 0.30 tolerated(0.21) benign(0.026) TCGA-A6-4105-01 1 118166873 118166873 G A FAM46C 3'UTR 0.63 TCGA-A6-4105-01 1 144879283 144879283 C T PDE4DIP Silent p.S1389S 0.08 TCGA-A6-4105-01 1 157773859 157773859 C A FCRL1 Missense_Mutation p.S32I 0.46 deleterious(0.01) possibly_damaging(0.898) TCGA-A6-4105-01 1 158435440 158435440 T C OR10K1 Missense_Mutation p.I30T 0.08 deleterious(0.03) benign(0.004) TCGA-A6-4105-01 1 179363070 179363070 C A AXDND1 Missense_Mutation p.A299D 0.17 deleterious(0.02) probably_damaging(0.975) TCGA-A6-4105-01 1 203148987 203148987 C T CHI3L1 Missense_Mutation p.G305R 0.42 tolerated(0.06) possibly_damaging(0.494) TCGA-A6-4105-01 1 204409361 204409361 C T PIK3C2B Missense_Mutation p.R1113H 0.30 deleterious(0) probably_damaging(0.983) TCGA-A6-4105-01 1 205116510 205116510 C A DSTYK 3'UTR 0.52 TCGA-A6-4105-01 1 216107999 216107999 C G USH2A Missense_Mutation p.S2420T 0.19 benign(0.049) TCGA-A6-4105-01 1 40235762 40235762 C A OXCT2 Missense_Mutation p.G389V 0.36 deleterious(0) probably_damaging(0.997) TCGA-A6-4105-01 1 45793156 45793156 G A HPDL Silent p.A112A 0.73 TCGA-A6-4105-01 1 9305212 9305212 T A H6PD Silent p.G73G 0.50 TCGA-A6-4105-01 20 20071525 20071525 C T C20orf26 Missense_Mutation p.R202C 0.14 deleterious(0) possibly_damaging(0.857) TCGA-A6-4105-01 20 36572714 36572714 G A VSTM2L 3'UTR 0.20 TCGA-A6-4105-01 20 42355517 42355517 G C GTSF1L 5'UTR 0.07 TCGA-A6-4105-01 20 47267433 47267433 T A PREX1 Missense_Mutation p.E939V 0.07 deleterious(0) benign(0.375) TCGA-A6-4105-01 20 48472019 48472019 C A SLC9A8 Missense_Mutation p.T221N 0.09 deleterious(0) probably_damaging(0.999) TCGA-A6-4105-01 20 55803372 55803372 C T BMP7 Missense_Mutation p.R175Q 0.71 deleterious(0.01) probably_damaging(0.993) TCGA-A6-4105-01 20 57598987 57598987 G C TUBB1 Missense_Mutation p.V169L 0.74 deleterious_low_confidence(0) benign(0.107) TCGA-A6-4105-01 20 58521495 58521495 G T FAM217B 3'UTR 0.69 TCGA-A6-4105-01 21 45826582 45826582 C A TRPM2 Missense_Mutation p.L966M 0.34 deleterious(0.04) benign(0.038) TCGA-A6-4105-01 22 31137319 31137319 C T OSBP2 Silent p.A272A 0.33 TCGA-A6-4105-01 22 36714301 36714301 C T MYH9 Missense_Mutation p.R393H 0.21 probably_damaging(0.932) TCGA-A6-4105-01 22 39134945 39134945 G A SUN2 Missense_Mutation p.T592M 0.36 deleterious(0) probably_damaging(0.99) TCGA-A6-4105-01 22 45075739 45075739 G A PRR5 Missense_Mutation p.M20I 0.29 tolerated_low_confidence(0.07) unknown(0) TCGA-A6-4105-01 22 50723040 50723040 T C PLXNB2 Missense_Mutation p.M715V 0.14 tolerated(0.7) benign(0) TCGA-A6-4105-01 2 141245229 141245229 C T LRP1B Missense_Mutation p.G3067D 0.47 probably_damaging(0.982) TCGA-A6-4105-01 2 152382555 152382555 G A NEB Missense_Mutation p.H7360Y 0.25 possibly_damaging(0.657) TCGA-A6-4105-01 2 15378666 15378666 G A NBAS Missense_Mutation p.H1957Y 0.47 deleterious(0.05) benign(0.057) TCGA-A6-4105-01 2 179440747 179440747 C T TTN Missense_Mutation p.R23371H 0.26 TCGA-A6-4105-01 2 179656859 179656859 T G TTN Missense_Mutation p.E534D 0.11 TCGA-A6-4105-01 2 191066978 191066978 T C C2orf88 3'UTR 0.08 TCGA-A6-4105-01 2 214794843 214794843 A C SPAG16 Missense_Mutation p.K458N 0.18 tolerated(1) benign(0.005) TCGA-A6-4105-01 2 219538345 219538345 C T STK36 Intron 0.13 TCGA-A6-4105-01 2 220353517 220353517 G T SPEG Missense_Mutation p.A2682S 0.27 benign(0.398) TCGA-A6-4105-01 2 242435833 242435833 G A STK25 Silent p.H407H 0.27 TCGA-A6-4105-01 2 27662673 27662673 G A NRBP1 Missense_Mutation p.R315K 0.30 deleterious(0) probably_damaging(0.996) TCGA-A6-4105-01 2 66664921 66664921 C T MEIS1 Missense_Mutation p.T22M 0.27 deleterious(0.02) possibly_damaging(0.582) TCGA-A6-4105-01 2 88387552 88387552 C G SMYD1 Missense_Mutation p.S162R 0.42 tolerated(0.16) benign(0.364) TCGA-A6-4105-01 2 98779316 98779316 G A VWA3B Missense_Mutation p.A331T 0.35 tolerated(0.08) possibly_damaging(0.677) TCGA-A6-4105-01 3 120320071 120320071 C T NDUFB4 Silent p.L98L 0.12 TCGA-A6-4105-01 3 129290605 129290605 G A PLXND1 Missense_Mutation p.R1054W 0.08 deleterious(0) possibly_damaging(0.766) TCGA-A6-4105-01 3 14770188 14770188 A C C3orf20 Missense_Mutation p.T645P 0.22 tolerated(0.12) benign(0.032) TCGA-A6-4105-01 3 160102377 160102377 C G IFT80 Missense_Mutation p.K4N 0.12 deleterious(0.02) benign(0.128) TCGA-A6-4105-01 3 167250732 167250732 T A WDR49 Missense_Mutation p.N311I 0.17 deleterious(0) possibly_damaging(0.478) TCGA-A6-4105-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.34 deleterious(0.04) probably_damaging(0.96) TCGA-A6-4105-01 3 194325126 194325126 C T TMEM44 Missense_Mutation p.G403R 0.43 deleterious(0.03) probably_damaging(0.98) TCGA-A6-4105-01 3 21792471 21792471 C T ZNF385D 5'UTR 0.26 TCGA-A6-4105-01 3 42244253 42244253 G A TRAK1 Intron 0.36 TCGA-A6-4105-01 3 48508942 48508942 C T TREX1 Silent p.I351I 0.30 TCGA-A6-4105-01 3 51746564 51746564 T C GRM2 Missense_Mutation p.S176P 0.30 deleterious(0) probably_damaging(0.974) TCGA-A6-4105-01 3 57647252 57647252 A C DENND6A Silent p.P180P 0.13 TCGA-A6-4105-01 3 78766423 78766423 A G ROBO1 Splice_Site p.X306_splice 0.19 TCGA-A6-4105-01 4 120182906 120182906 A G USP53 Missense_Mutation p.S287G 0.25 tolerated(0.11) benign(0.398) TCGA-A6-4105-01 4 123844278 123844278 G C SPATA5 5'UTR 0.34 TCGA-A6-4105-01 4 134071524 134071524 G A PCDH10 Missense_Mutation p.E77K 0.43 tolerated(0.05) possibly_damaging(0.823) TCGA-A6-4105-01 4 141313526 141313527 - T CLGN Frame_Shift_Ins p.H500Tfs*2 0.19 TCGA-A6-4105-01 4 148579074 148579074 A G PRMT10 Missense_Mutation p.I400T 0.20 tolerated(0.72) benign(0) TCGA-A6-4105-01 4 151186932 151186932 A G LRBA Missense_Mutation p.I2845T 0.23 deleterious(0) probably_damaging(0.989) TCGA-A6-4105-01 4 155506592 155506592 A C FGA Intron 0.36 TCGA-A6-4105-01 4 184930340 184930340 C T STOX2 Missense_Mutation p.R117W 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-A6-4105-01 4 3037163 3037163 G A GRK4 Silent p.A440A 0.38 TCGA-A6-4105-01 4 67952 67952 T A Z95704.1 3'Flank 0.31 TCGA-A6-4105-01 4 75673343 75673343 G A BTC Missense_Mutation p.R149C 0.25 deleterious(0.04) benign(0.109) TCGA-A6-4105-01 5 112173997 112173998 - TCCT APC Frame_Shift_Ins p.D903Sfs*2 0.38 TCGA-A6-4105-01 5 114499401 114499401 C A TRIM36 Nonsense_Mutation p.E38* 0.62 TCGA-A6-4105-01 5 127615884 127615884 C T FBN2 Missense_Mutation p.D2380N 0.54 deleterious(0) probably_damaging(1) TCGA-A6-4105-01 5 140237130 140237130 C T PCDHA10 Silent p.G499G 0.60 TCGA-A6-4105-01 5 140307115 140307115 G A PCDHAC1 Missense_Mutation p.R213H 0.73 deleterious(0) possibly_damaging(0.723) TCGA-A6-4105-01 5 140855668 140855668 A G PCDHGC3 5'UTR 0.13 TCGA-A6-4105-01 5 141336010 141336010 C T PCDH12 Silent p.T469T 0.56 TCGA-A6-4105-01 5 179765523 179765523 G A GFPT2 Missense_Mutation p.R29W 0.46 deleterious(0) probably_damaging(0.999) TCGA-A6-4105-01 5 180053259 180053259 C A FLT4 Missense_Mutation p.K370N 0.33 deleterious(0) possibly_damaging(0.861) TCGA-A6-4105-01 5 31297423 31297423 C T CDH6 Missense_Mutation p.T184M 0.40 deleterious(0) probably_damaging(0.913) TCGA-A6-4105-01 5 32790114 32790114 G A NPR3 3'UTR 0.31 TCGA-A6-4105-01 5 35876219 35876219 G T IL7R Missense_Mutation p.K337N 0.35 deleterious(0.02) benign(0.045) TCGA-A6-4105-01 5 37834919 37834919 C T GDNF Missense_Mutation p.A11T 0.51 tolerated_low_confidence(0.32) benign(0.002) TCGA-A6-4105-01 5 6312561 6312561 G A CTD-2324F15.2 RNA 0.33 TCGA-A6-4105-01 5 94749789 94749789 G T FAM81B Missense_Mutation p.Q144H 0.56 tolerated(0.17) benign(0.082) TCGA-A6-4105-01 6 123105072 123105072 G T FABP7 3'UTR 0.23 TCGA-A6-4105-01 6 137245147 137245147 C T SLC35D3 Silent p.T188T 0.25 TCGA-A6-4105-01 6 152738069 152738069 G A SYNE1 Missense_Mutation p.R1835C 0.32 benign(0.001) TCGA-A6-4105-01 6 161469718 161469718 C A MAP3K4 Nonsense_Mutation p.Y138* 0.43 TCGA-A6-4105-01 6 26189010 26189010 A G HIST1H4D Missense_Mutation p.Y99H 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.762) TCGA-A6-4105-01 6 27100966 27100966 A G HIST1H2AG Missense_Mutation p.N39S 0.40 tolerated_low_confidence(0.06) benign(0.014) TCGA-A6-4105-01 7 107575917 107575917 G C LAMB1 Silent p.L1377L 0.16 TCGA-A6-4105-01 7 111462481 111462481 C G DOCK4 Missense_Mutation p.R956P 0.22 deleterious(0) possibly_damaging(0.865) TCGA-A6-4105-01 7 116339175 116339175 G C MET Missense_Mutation p.V13L 0.12 tolerated(0.48) benign(0.009) TCGA-A6-4105-01 7 126086341 126086341 T A GRM8 Missense_Mutation p.Y839F 0.23 deleterious(0) probably_damaging(0.997) TCGA-A6-4105-01 7 132192760 132192760 C T PLXNA4 Silent p.S231S 0.21 TCGA-A6-4105-01 7 141708343 141708343 G A MGAM Silent p.G55G 0.18 TCGA-A6-4105-01 7 158734753 158734753 G T WDR60 Silent p.V972V 0.31 TCGA-A6-4105-01 7 30101534 30101534 A G PLEKHA8 Missense_Mutation p.T374A 0.09 deleterious(0.01) possibly_damaging(0.728) TCGA-A6-4105-01 7 35057562 35057562 A T DPY19L1 Missense_Mutation p.F42I 0.19 deleterious(0) probably_damaging(0.999) TCGA-A6-4105-01 7 39379343 39379343 C T POU6F2 Missense_Mutation p.P205L 0.24 tolerated_low_confidence(0.14) unknown(0) TCGA-A6-4105-01 7 4249773 4249773 G C SDK1 Missense_Mutation p.E1840Q 0.25 tolerated(0.06) possibly_damaging(0.837) TCGA-A6-4105-01 7 47884661 47884661 C T PKD1L1 Silent p.A1723A 0.13 TCGA-A6-4105-01 7 48318569 48318569 C A ABCA13 Missense_Mutation p.P2593Q 0.22 possibly_damaging(0.878) TCGA-A6-4105-01 7 8272305 8272305 G A ICA1 Missense_Mutation p.T33M 0.22 deleterious(0) probably_damaging(0.999) TCGA-A6-4105-01 8 144462806 144462806 C T RHPN1 Missense_Mutation p.R422W 0.10 deleterious(0.02) probably_damaging(0.972) TCGA-A6-4105-01 8 144550827 144550827 G A ZC3H3 Missense_Mutation p.R636W 0.45 deleterious(0) probably_damaging(0.947) TCGA-A6-4105-01 8 17915077 17915077 A G ASAH1 Missense_Mutation p.L401P 0.10 deleterious(0) possibly_damaging(0.809) TCGA-A6-4105-01 8 37964671 37964671 G T ASH2L Missense_Mutation p.G130C 0.35 deleterious(0) possibly_damaging(0.489) TCGA-A6-4105-01 8 49831197 49831197 C G SNAI2 3'UTR 0.27 TCGA-A6-4105-01 8 86171714 86171714 C T CA13 Silent p.S100S 0.19 TCGA-A6-4105-01 9 101552790 101552790 C T ANKS6 Missense_Mutation p.R153Q 0.43 tolerated(0.06) benign(0.18) TCGA-A6-4105-01 9 117071636 117071636 G A COL27A1 Missense_Mutation p.V1772M 0.39 unknown(0) TCGA-A6-4105-01 9 125391062 125391062 G C OR1B1 Silent p.L251L 0.31 TCGA-A6-4105-01 9 13219635 13219635 C A MPDZ Missense_Mutation p.A337S 0.45 tolerated(0.08) benign(0.209) TCGA-A6-4105-01 9 138395627 138395627 G A MRPS2 Missense_Mutation p.R180H 0.15 tolerated(0.37) benign(0.001) TCGA-A6-4105-01 9 138656941 138656941 G A KCNT1 Missense_Mutation p.R367H 0.48 deleterious(0.02) benign(0.1) TCGA-A6-4105-01 9 19372138 19372138 G T DENND4C Missense_Mutation p.W1899C 0.11 tolerated(0.05) benign(0.072) TCGA-A6-4105-01 9 43737337 43737337 C A CNTNAP3B Silent p.G69G 0.53 TCGA-A6-4105-01 9 66553533 66553533 C T RP11-262H14.4 RNA 0.09 TCGA-A6-4105-01 9 77397719 77397719 G T TRPM6 Missense_Mutation p.S990R 0.42 deleterious(0) probably_damaging(0.984) TCGA-A6-4105-01 X 12906863 12906863 G A TLR7 3'UTR 0.58 TCGA-A6-4105-01 X 139587063 139587063 C T SOX3 Missense_Mutation p.A55T 0.82 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-A6-4105-01 X 152814156 152814156 G A ATP2B3 Silent p.T394T 0.79 TCGA-A6-4105-01 X 23700557 23700557 C T PRDX4 Missense_Mutation p.T215I 0.82 deleterious(0) probably_damaging(1) TCGA-A6-4105-01 X 32834617 32834617 G A DMD Silent p.G166G 0.46 TCGA-A6-4105-01 X 63411678 63411678 G A AMER1 Nonsense_Mutation p.R497* 0.77 TCGA-A6-4105-01 X 70787407 70787407 G C OGT Missense_Mutation p.E883Q 0.14 deleterious(0) probably_damaging(1) TCGA-A6-4105-01 X 77298818 77298818 G T ATP7A Missense_Mutation p.D1337Y 0.35 deleterious(0) probably_damaging(0.995) TCGA-A6-4107-01 10 17024557 17024557 G A CUBN Missense_Mutation p.R1541W 0.21 deleterious(0) probably_damaging(0.953) TCGA-A6-4107-01 10 27436455 27436455 C T YME1L1 Missense_Mutation p.R104H 0.11 tolerated_low_confidence(0.3) benign(0) TCGA-A6-4107-01 10 60580132 60580132 G A BICC1 Missense_Mutation p.D900N 0.26 deleterious(0.01) possibly_damaging(0.867) TCGA-A6-4107-01 10 73826741 73826741 G A SPOCK2 Missense_Mutation p.R283C 0.13 deleterious(0) probably_damaging(0.965) TCGA-A6-4107-01 10 84498335 84498335 G T NRG3 Missense_Mutation p.C319F 0.11 deleterious(0) probably_damaging(0.996) TCGA-A6-4107-01 10 88719781 88719781 G A SNCG Missense_Mutation p.A63T 0.11 tolerated(0.1) probably_damaging(1) TCGA-A6-4107-01 10 88912509 88912509 C T FAM35A Silent p.G466G 0.43 TCGA-A6-4107-01 11 107325273 107325273 T C CWF19L2 Missense_Mutation p.K81R 0.15 deleterious(0.03) possibly_damaging(0.611) TCGA-A6-4107-01 11 107403047 107403047 G T ALKBH8 Missense_Mutation p.S286Y 0.08 deleterious(0) probably_damaging(0.981) TCGA-A6-4107-01 11 119510674 119510674 G T RP11-196E1.3 RNA 0.52 TCGA-A6-4107-01 11 125647836 125647836 C A PATE2 Missense_Mutation p.M46I 0.37 deleterious(0.04) probably_damaging(0.991) TCGA-A6-4107-01 11 134253926 134253926 G A B3GAT1 Missense_Mutation p.T90M 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-A6-4107-01 11 409944 409944 G A SIGIRR 5'UTR 0.36 TCGA-A6-4107-01 11 55322475 55322475 G T OR4C15 Missense_Mutation p.M231I 0.06 tolerated_low_confidence(0.4) benign(0.004) TCGA-A6-4107-01 11 56184833 56184833 T C OR5R1 Silent p.L292L 0.10 TCGA-A6-4107-01 11 61724419 61724419 G A BEST1 Silent p.A135A 0.10 TCGA-A6-4107-01 11 6232266 6232266 C T C11orf42 Silent p.D332D 0.19 TCGA-A6-4107-01 11 92534757 92534757 G A FAT3 Missense_Mutation p.E2860K 0.18 benign(0.108) TCGA-A6-4107-01 12 104064544 104064544 T C STAB2 Missense_Mutation p.F777S 0.36 deleterious(0) possibly_damaging(0.811) TCGA-A6-4107-01 12 109845610 109845610 G A MYO1H Silent p.P333P 0.30 TCGA-A6-4107-01 12 118199014 118199014 C T KSR2 Missense_Mutation p.R263H 0.30 deleterious(0.04) benign(0.048) TCGA-A6-4107-01 12 122826200 122826200 T A CLIP1 Missense_Mutation p.K517N 0.11 deleterious(0) probably_damaging(0.989) TCGA-A6-4107-01 12 15704519 15704519 C T PTPRO Silent p.S824S 0.12 TCGA-A6-4107-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.60 deleterious(0.04) possibly_damaging(0.506) TCGA-A6-4107-01 12 266719 266719 G A IQSEC3 Missense_Mutation p.E768K 0.08 tolerated(0.08) probably_damaging(0.974) TCGA-A6-4107-01 12 41323613 41323613 G A CNTN1 Missense_Mutation p.R171H 0.16 deleterious(0) probably_damaging(1) TCGA-A6-4107-01 12 4461610 4461610 T G C12orf5 Nonsense_Mutation p.L189* 0.14 TCGA-A6-4107-01 12 4705861 4705861 C T DYRK4 Missense_Mutation p.R176C 0.08 deleterious(0) probably_damaging(1) TCGA-A6-4107-01 12 49422997 49422997 C T KMT2D Missense_Mutation p.D4700N 0.21 unknown(0) TCGA-A6-4107-01 12 55715127 55715127 C A OR6C1 Silent p.I248I 0.10 TCGA-A6-4107-01 12 6697000 6697000 A C CHD4 Missense_Mutation p.L1194R 0.20 deleterious(0) benign(0.018) TCGA-A6-4107-01 12 6981408 6981408 T C SPSB2 Missense_Mutation p.R220G 0.11 deleterious(0) possibly_damaging(0.728) TCGA-A6-4107-01 12 80647295 80647295 C T OTOGL Silent p.C436C 0.27 TCGA-A6-4107-01 12 85255685 85255685 C T SLC6A15 Missense_Mutation p.R640H 0.32 deleterious(0.02) benign(0.026) TCGA-A6-4107-01 12 8688712 8688712 G A CLEC4E Silent p.D154D 0.55 TCGA-A6-4107-01 13 111373413 111373413 C T ING1 3'UTR 0.45 TCGA-A6-4107-01 13 112724144 112724144 G T SOX1 3'UTR 0.09 TCGA-A6-4107-01 13 51530594 51530594 A C RNASEH2B Missense_Mutation p.K308T 0.42 tolerated_low_confidence(0.09) benign(0.011) TCGA-A6-4107-01 13 58208378 58208378 C T PCDH17 Silent p.N566N 0.28 TCGA-A6-4107-01 13 73428244 73428244 G A PIBF1 Missense_Mutation p.V425M 0.12 tolerated(0.1) probably_damaging(0.997) TCGA-A6-4107-01 13 84453778 84453778 G T SLITRK1 Missense_Mutation p.P622Q 0.43 deleterious(0.02) possibly_damaging(0.707) TCGA-A6-4107-01 13 95886873 95886873 A T ABCC4 Silent p.I174I 0.14 TCGA-A6-4107-01 14 100402426 100402426 A G EML1 Missense_Mutation p.D676G 0.09 deleterious(0.03) possibly_damaging(0.45) TCGA-A6-4107-01 14 106090996 106090996 C T IGHG4 Silent p.P267P 0.05 TCGA-A6-4107-01 14 35008849 35008849 G A EAPP 5'UTR 0.33 TCGA-A6-4107-01 14 39514456 39514456 G A SEC23A Missense_Mutation p.R604C 0.40 deleterious(0.01) probably_damaging(0.966) TCGA-A6-4107-01 14 52794092 52794092 C T PTGER2 Missense_Mutation p.R333W 0.22 deleterious(0) possibly_damaging(0.724) TCGA-A6-4107-01 14 64586162 64586162 T G SYNE2 Missense_Mutation p.I4286M 0.09 probably_damaging(0.999) TCGA-A6-4107-01 15 101605764 101605764 A T LRRK1 Missense_Mutation p.S1708C 0.29 deleterious(0.01) possibly_damaging(0.897) TCGA-A6-4107-01 15 20644361 20644361 C T HERC2P3 RNA 0.28 TCGA-A6-4107-01 15 24924071 24924071 C A NPAP1 Missense_Mutation p.S1019R 0.18 deleterious(0.03) possibly_damaging(0.716) TCGA-A6-4107-01 15 52902419 52902419 G A FAM214A Missense_Mutation p.T231I 0.32 deleterious(0) possibly_damaging(0.646) TCGA-A6-4107-01 15 52905980 52905980 G A FAM214A Nonsense_Mutation p.R31* 0.33 TCGA-A6-4107-01 15 56122742 56122742 G A NEDD4 Missense_Mutation p.T1204I 0.24 deleterious(0) possibly_damaging(0.808) TCGA-A6-4107-01 15 58971470 58971470 T C ADAM10 Missense_Mutation p.S113G 0.12 deleterious(0) possibly_damaging(0.517) TCGA-A6-4107-01 15 59499857 59499857 G A LDHAL6B Missense_Mutation p.G240R 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-A6-4107-01 15 63127973 63127973 A T TLN2 Missense_Mutation p.Q2389L 0.09 deleterious(0) possibly_damaging(0.789) TCGA-A6-4107-01 15 77425882 77425882 C A PEAK1 Missense_Mutation p.C1181F 0.28 tolerated(0.06) benign(0.144) TCGA-A6-4107-01 15 78921372 78921372 C T CHRNB4 Silent p.Q425Q 0.20 TCGA-A6-4107-01 15 89911307 89911307 G A MIR9-3 RNA 0.25 TCGA-A6-4107-01 16 14742398 14742398 G A BFAR Silent p.Q139Q 0.14 TCGA-A6-4107-01 16 20352631 20352631 G A UMOD Silent p.T453T 0.51 TCGA-A6-4107-01 16 21328591 21328591 C G CRYM-AS1 RNA 0.23 TCGA-A6-4107-01 16 22295371 22295371 A T EEF2K 3'UTR 0.28 TCGA-A6-4107-01 16 67702456 67702456 G A C16orf86 Missense_Mutation p.V303I 0.15 deleterious(0) benign(0.198) TCGA-A6-4107-01 16 71803537 71803537 G A AP1G1 Missense_Mutation p.H211Y 0.26 tolerated(0.22) benign(0.226) TCGA-A6-4107-01 16 77397737 77397737 C T ADAMTS18 Missense_Mutation p.V340M 0.10 deleterious(0.03) benign(0.15) TCGA-A6-4107-01 16 80574939 80574939 C T DYNLRB2 5'UTR 0.41 TCGA-A6-4107-01 16 84255939 84255939 C T KCNG4 Missense_Mutation p.G482S 0.15 tolerated(0.37) benign(0.001) TCGA-A6-4107-01 16 86585881 86585881 G A MTHFSD Intron 0.14 TCGA-A6-4107-01 17 33592780 33592780 G C SLFN5 Missense_Mutation p.G850A 0.11 deleterious(0.01) possibly_damaging(0.577) TCGA-A6-4107-01 17 37331496 37331496 G A CACNB1 Missense_Mutation p.R583C 0.18 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-A6-4107-01 17 37360859 37360859 G A RPL19 Silent p.E183E 0.12 TCGA-A6-4107-01 17 39333958 39333958 A G KRTAP4-2 3'UTR 0.12 TCGA-A6-4107-01 17 39521474 39521474 G A KRT33B Missense_Mutation p.R277C 0.10 tolerated(0.14) possibly_damaging(0.693) TCGA-A6-4107-01 17 78261680 78261680 T A RNF213 Missense_Mutation p.L110M 0.10 benign(0.37) TCGA-A6-4107-01 17 7951764 7951764 G A ALOX15B Missense_Mutation p.A638T 0.17 tolerated(0.24) benign(0.08) TCGA-A6-4107-01 18 25591909 25591909 C A CDH2 Missense_Mutation p.K149N 0.07 tolerated(0.25) benign(0.004) TCGA-A6-4107-01 19 14038722 14038722 G A CC2D1A Missense_Mutation p.R778Q 0.48 deleterious(0) probably_damaging(0.941) TCGA-A6-4107-01 19 18700262 18700262 C T C19orf60 Silent p.R74R 0.27 TCGA-A6-4107-01 19 21606386 21606386 A G ZNF493 Missense_Mutation p.T309A 0.20 tolerated(0.2) probably_damaging(0.998) TCGA-A6-4107-01 19 32873747 32873748 - T ZNF507 Frame_Shift_Ins p.L875Sfs*7 0.12 TCGA-A6-4107-01 19 33701435 33701435 C T SLC7A10 Missense_Mutation p.V401I 0.57 tolerated(0.14) benign(0.411) TCGA-A6-4107-01 19 36235271 36235271 C T U2AF1L4 Missense_Mutation p.V62M 0.20 deleterious(0.02) probably_damaging(0.925) TCGA-A6-4107-01 19 41223926 41223926 G A ITPKC Missense_Mutation p.G296R 0.09 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-A6-4107-01 19 43672216 43672216 C A PSG5 Intron 0.12 TCGA-A6-4107-01 19 47423976 47423976 A T ARHGAP35 Nonsense_Mutation p.R682* 0.10 TCGA-A6-4107-01 19 48239667 48239667 C T EHD2 Silent p.P319P 0.35 TCGA-A6-4107-01 19 4941914 4941914 C T UHRF1 RNA 0.08 TCGA-A6-4107-01 19 52715982 52715982 C T PPP2R1A Missense_Mutation p.R183W 0.60 deleterious(0) probably_damaging(1) TCGA-A6-4107-01 19 53855151 53855151 A G ZNF845 Missense_Mutation p.E408G 0.28 deleterious(0) probably_damaging(0.993) TCGA-A6-4107-01 19 54967587 54967587 G A LENG8 Missense_Mutation p.R463Q 0.18 deleterious(0.01) benign(0.303) TCGA-A6-4107-01 19 57290791 57290791 T A ZIM2 Missense_Mutation p.E232D 0.15 tolerated(0.05) possibly_damaging(0.813) TCGA-A6-4107-01 19 57335046 57335046 G A PEG3 Silent p.D132D 0.17 TCGA-A6-4107-01 19 57335822 57335822 G A PEG3 Nonsense_Mutation p.R68* 0.26 TCGA-A6-4107-01 19 6496026 6496026 G A TUBB4A Missense_Mutation p.R162C 0.15 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-A6-4107-01 19 6718167 6718167 G A C3 Missense_Mutation p.R148W 0.27 deleterious(0.01) probably_damaging(0.913) TCGA-A6-4107-01 19 8127140 8127140 G A CCL25 3'UTR 0.25 TCGA-A6-4107-01 19 8190894 8190894 G A FBN3 Silent p.N871N 0.18 TCGA-A6-4107-01 1 103544358 103544358 A T COL11A1 Missense_Mutation p.L115H 0.26 probably_damaging(1) TCGA-A6-4107-01 1 115829062 115829062 T C NGF Missense_Mutation p.S119G 0.08 tolerated(0.33) benign(0) TCGA-A6-4107-01 1 145273244 145273244 G A NOTCH2NL Missense_Mutation p.R33H 0.04 tolerated(0.52) benign(0.029) TCGA-A6-4107-01 1 145687055 145687055 C A RNF115 Missense_Mutation p.F249L 0.06 tolerated(1) benign(0.345) TCGA-A6-4107-01 1 151752502 151752502 G A TDRKH Missense_Mutation p.H116Y 0.46 deleterious(0.01) possibly_damaging(0.886) TCGA-A6-4107-01 1 151810657 151810657 G A C2CD4D Missense_Mutation p.P270L 0.27 tolerated(0.33) benign(0.15) TCGA-A6-4107-01 1 152275935 152275935 T A FLG Silent p.A3809A 0.36 TCGA-A6-4107-01 1 154321421 154321421 C A ATP8B2 Missense_Mutation p.Q1167K 0.19 tolerated(0.23) probably_damaging(0.968) TCGA-A6-4107-01 1 16459993 16459993 T C EPHA2 Missense_Mutation p.Q616R 0.52 deleterious(0) possibly_damaging(0.755) TCGA-A6-4107-01 1 168066206 168066206 G A GPR161 Silent p.R233R 0.30 TCGA-A6-4107-01 1 17945840 17945840 C T ARHGEF10L Missense_Mutation p.S281L 0.30 tolerated(0.17) probably_damaging(0.951) TCGA-A6-4107-01 1 201437515 201437515 T C PHLDA3 3'UTR 0.21 TCGA-A6-4107-01 1 204408130 204408130 G A PIK3C2B Missense_Mutation p.S1150L 0.15 deleterious(0) probably_damaging(0.962) TCGA-A6-4107-01 1 205739923 205739923 G A RAB7L1 Silent p.N146N 0.15 TCGA-A6-4107-01 1 206243219 206243219 C T C1orf186 Missense_Mutation p.A15T 0.18 deleterious(0) probably_damaging(0.998) TCGA-A6-4107-01 1 206566196 206566196 G A SRGAP2 Missense_Mutation p.V127I 0.07 tolerated(0.71) benign(0.002) TCGA-A6-4107-01 1 218609388 218609388 G T TGFB2 Missense_Mutation p.K305N 0.10 tolerated(0.16) possibly_damaging(0.777) TCGA-A6-4107-01 1 228434385 228434385 G A OBSCN Missense_Mutation p.R1397H 0.18 benign(0.014) TCGA-A6-4107-01 1 228481249 228481249 C A OBSCN Missense_Mutation p.A4117E 0.25 benign(0.001) TCGA-A6-4107-01 1 229596471 229596471 G A NUP133 Nonsense_Mutation p.R911* 0.15 TCGA-A6-4107-01 1 235507342 235507342 G A GGPS1 3'UTR 0.50 TCGA-A6-4107-01 1 237801686 237801686 G A RYR2 Silent p.L2274L 0.10 TCGA-A6-4107-01 1 23885468 23885468 T C ID3 Missense_Mutation p.R115G 0.10 tolerated(0.21) benign(0.006) TCGA-A6-4107-01 1 247751925 247751925 G A OR2G2 Silent p.L88L 0.34 TCGA-A6-4107-01 1 26378224 26378224 C A TRIM63 3'UTR 0.48 TCGA-A6-4107-01 1 55595217 55595217 C T USP24 Missense_Mutation p.D1190N 0.21 tolerated(0.19) benign(0.039) TCGA-A6-4107-01 1 74819010 74819010 A T FPGT-TNNI3K Silent p.I445I 0.07 TCGA-A6-4107-01 1 90049101 90049101 G C LRRC8B Missense_Mutation p.G298R 0.30 deleterious(0) probably_damaging(0.999) TCGA-A6-4107-01 1 92647634 92647634 C A KIAA1107 Missense_Mutation p.S1027Y 0.12 deleterious(0.03) possibly_damaging(0.807) TCGA-A6-4107-01 20 10629710 10629710 C T JAG1 Missense_Mutation p.R465Q 0.34 tolerated(0.21) benign(0.004) TCGA-A6-4107-01 20 31017759 31017759 C T ASXL1 Silent p.S207S 0.57 TCGA-A6-4107-01 20 34785895 34785895 C T EPB41L1 Missense_Mutation p.R534W 0.28 deleterious(0.02) probably_damaging(0.981) TCGA-A6-4107-01 20 36993277 36993277 T C LBP Silent p.A264A 0.12 TCGA-A6-4107-01 20 44828165 44828165 C A CDH22 Missense_Mutation p.Q440H 0.11 deleterious(0.04) possibly_damaging(0.77) TCGA-A6-4107-01 20 47361630 47361630 C T PREX1 Missense_Mutation p.A116T 0.17 tolerated(0.3) benign(0.379) TCGA-A6-4107-01 21 19685352 19685352 C T TMPRSS15 Missense_Mutation p.R692Q 0.14 tolerated(1) benign(0) TCGA-A6-4107-01 21 28338438 28338438 G T ADAMTS5 Silent p.V91V 0.55 TCGA-A6-4107-01 21 42080507 42080507 G A DSCAM Silent p.N78N 0.13 TCGA-A6-4107-01 21 42752022 42752022 G A MX2 Missense_Mutation p.R174Q 0.18 tolerated(0.46) benign(0.032) TCGA-A6-4107-01 21 45999668 45999668 C T KRTAP10-5 Missense_Mutation p.R263H 0.15 tolerated(0.11) benign(0.252) TCGA-A6-4107-01 21 47320529 47320529 C T PCBP3 Missense_Mutation p.R72C 0.10 tolerated(0.08) benign(0.278) TCGA-A6-4107-01 22 20049088 20049088 C A TANGO2 Missense_Mutation p.P163T 0.14 deleterious(0) probably_damaging(0.99) TCGA-A6-4107-01 22 21153515 21153515 C T PI4KA Missense_Mutation p.A624T 0.26 deleterious(0) probably_damaging(0.988) TCGA-A6-4107-01 22 22516826 22516826 G A IGLV4-60 Silent p.S38S 0.09 TCGA-A6-4107-01 22 23040853 23040853 G A IGLV2-23 Missense_Mutation p.A101T 0.25 tolerated_low_confidence(0.07) benign(0.061) TCGA-A6-4107-01 22 33777912 33777912 T C LARGE Missense_Mutation p.D375G 0.08 deleterious(0.01) probably_damaging(1) TCGA-A6-4107-01 22 37319378 37319378 G A CSF2RB Missense_Mutation p.V57I 0.33 tolerated(1) benign(0.002) TCGA-A6-4107-01 22 46238923 46238923 C T ATXN10 Silent p.S430S 0.28 TCGA-A6-4107-01 2 136605727 136605727 C T MCM6 Missense_Mutation p.R650Q 0.24 deleterious(0.03) probably_damaging(0.974) TCGA-A6-4107-01 2 1426887 1426887 C T TPO Silent p.Y55Y 0.39 TCGA-A6-4107-01 2 167133672 167133672 T A SCN9A Missense_Mutation p.I888F 0.10 deleterious(0.01) possibly_damaging(0.876) TCGA-A6-4107-01 2 168101186 168101186 A C XIRP2 Missense_Mutation p.K1095T 0.12 benign(0.168) TCGA-A6-4107-01 2 179498314 179498314 C T TTN Missense_Mutation p.V14258I 0.17 TCGA-A6-4107-01 2 185801920 185801920 A - ZNF804A Frame_Shift_Del p.K601Sfs*44 0.23 TCGA-A6-4107-01 2 187466749 187466749 C T ITGAV Missense_Mutation p.R63W 0.15 deleterious(0.02) possibly_damaging(0.908) TCGA-A6-4107-01 2 189916190 189916190 C T COL5A2 Silent p.A929A 0.13 TCGA-A6-4107-01 2 20508332 20508332 T C PUM2 Missense_Mutation p.S178G 0.09 deleterious_low_confidence(0.03) benign(0.281) TCGA-A6-4107-01 2 206988878 206988878 C G NDUFS1 3'UTR 0.13 TCGA-A6-4107-01 2 210560535 210560535 C A MAP2 Missense_Mutation p.P1214H 0.09 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-A6-4107-01 2 233748780 233748780 G A NGEF Silent p.T504T 0.38 TCGA-A6-4107-01 2 238285730 238285730 C T COL6A3 Missense_Mutation p.A919T 0.27 probably_damaging(1) TCGA-A6-4107-01 2 42556075 42556075 A G EML4 Silent p.R797R 0.17 TCGA-A6-4107-01 2 70315174 70315174 T C PCBP1 Missense_Mutation p.L100P 0.34 deleterious(0.03) benign(0.366) TCGA-A6-4107-01 2 99688284 99688284 C T TSGA10 Missense_Mutation p.R331Q 0.07 tolerated(0.64) benign(0.065) TCGA-A6-4107-01 3 112534802 112534802 C A CD200R1L 3'UTR 0.21 TCGA-A6-4107-01 3 129289655 129289655 C T PLXND1 Missense_Mutation p.A1242T 0.26 tolerated(0.93) benign(0) TCGA-A6-4107-01 3 130110226 130110226 G A COL6A5 Missense_Mutation p.R874K 0.05 tolerated(1) benign(0.003) TCGA-A6-4107-01 3 142168248 142168248 A G ATR 3'UTR 0.29 TCGA-A6-4107-01 3 151155776 151155776 T C IGSF10 Silent p.T2191T 0.13 TCGA-A6-4107-01 3 15283695 15283695 C T CAPN7 Missense_Mutation p.A600V 0.16 deleterious(0.03) probably_damaging(0.971) TCGA-A6-4107-01 3 158364656 158364656 C T GFM1 Silent p.R164R 0.37 TCGA-A6-4107-01 3 160395714 160395714 G C ARL14 3'UTR 0.18 TCGA-A6-4107-01 3 16646816 16646816 C T DAZL 5'Flank 0.29 TCGA-A6-4107-01 3 172096090 172096090 C A FNDC3B Missense_Mutation p.H1013Q 0.21 tolerated(0.14) possibly_damaging(0.566) TCGA-A6-4107-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.28 deleterious(0.04) probably_damaging(0.96) TCGA-A6-4107-01 3 184922453 184922453 G A EHHADH Missense_Mutation p.R221W 0.09 deleterious(0) possibly_damaging(0.879) TCGA-A6-4107-01 3 186038410 186038410 C G DGKG 5'UTR 0.15 TCGA-A6-4107-01 3 21478477 21478477 C A ZNF385D Nonsense_Mutation p.E220* 0.10 TCGA-A6-4107-01 3 42678662 42678662 C T NKTR Missense_Mutation p.S489L 0.10 deleterious_low_confidence(0) unknown(0) TCGA-A6-4107-01 3 44297663 44297663 C G TOPAZ1 Missense_Mutation p.P950A 0.07 tolerated(0.31) benign(0.012) TCGA-A6-4107-01 3 47447418 47447418 C T PTPN23 Missense_Mutation p.S143F 0.34 unknown(0) TCGA-A6-4107-01 3 49759412 49759412 G A GMPPB Missense_Mutation p.R313C 0.13 tolerated(0.09) benign(0.003) TCGA-A6-4107-01 3 64004676 64004676 G A PSMD6 Missense_Mutation p.R179C 0.15 deleterious(0) probably_damaging(1) TCGA-A6-4107-01 3 64672514 64672514 G T ADAMTS9 Silent p.P82P 0.15 TCGA-A6-4107-01 4 100237258 100237258 C T ADH1B Missense_Mutation p.G122R 0.07 deleterious(0) probably_damaging(0.993) TCGA-A6-4107-01 4 169327852 169327852 T C DDX60L Silent p.E995E 0.25 TCGA-A6-4107-01 4 1804713 1804713 G A FGFR3 Missense_Mutation p.E335K 0.24 tolerated(0.09) benign(0.128) TCGA-A6-4107-01 4 265314 265314 T G ZNF732 Missense_Mutation p.K444N 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-A6-4107-01 4 96137342 96137342 C T UNC5C Missense_Mutation p.A556T 0.46 tolerated(0.36) benign(0.009) TCGA-A6-4107-01 5 13882917 13882917 A G DNAH5 Missense_Mutation p.I1061T 0.48 benign(0.092) TCGA-A6-4107-01 5 140181029 140181029 A G PCDHA3 Missense_Mutation p.I83V 0.56 tolerated_low_confidence(0.11) benign(0.11) TCGA-A6-4107-01 5 140237322 140237322 G A PCDHA10 Silent p.A563A 0.82 TCGA-A6-4107-01 5 140754752 140754752 C T PCDHGA6 Missense_Mutation p.L368F 0.16 tolerated_low_confidence(0.1) possibly_damaging(0.533) TCGA-A6-4107-01 5 140799529 140799529 G T PCDHGB7 Silent p.V701V 0.24 TCGA-A6-4107-01 5 14497036 14497037 - A TRIO Frame_Shift_Ins p.D2646Rfs*2 0.09 TCGA-A6-4107-01 5 149636363 149636363 C T CAMK2A Missense_Mutation p.V102M 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-4107-01 5 150911402 150911402 G A FAT2 Missense_Mutation p.T3186M 0.12 probably_damaging(0.954) TCGA-A6-4107-01 5 150943136 150943136 T C FAT2 Silent p.L1108L 0.25 TCGA-A6-4107-01 5 170610215 170610215 T G RANBP17 Missense_Mutation p.F637C 0.06 deleterious(0) probably_damaging(0.993) TCGA-A6-4107-01 5 180043449 180043449 G A FLT4 Missense_Mutation p.S1046L 0.44 deleterious(0) probably_damaging(0.916) TCGA-A6-4107-01 5 19591170 19591170 T C CDH18 Missense_Mutation p.K332R 0.26 tolerated(0.27) benign(0.03) TCGA-A6-4107-01 5 32058013 32058013 G A PDZD2 Silent p.T668T 0.05 TCGA-A6-4107-01 5 32090109 32090109 G A PDZD2 Silent p.Q2185Q 0.23 TCGA-A6-4107-01 5 63256860 63256860 C T HTR1A Silent p.T229T 0.26 TCGA-A6-4107-01 6 100838204 100838204 G C SIM1 3'UTR 0.26 TCGA-A6-4107-01 6 109774892 109774892 C T MICAL1 Missense_Mutation p.G139S 0.18 deleterious(0) probably_damaging(1) TCGA-A6-4107-01 6 111288954 111288955 AG - GTF3C6 Frame_Shift_Del p.E202Rfs*18 0.12 TCGA-A6-4107-01 6 143811716 143811716 A G FUCA2 3'Flank 0.19 TCGA-A6-4107-01 6 151670022 151670022 C A AKAP12 Missense_Mutation p.Q166K 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-A6-4107-01 6 165715241 165715241 G A C6orf118 Silent p.A190A 0.32 TCGA-A6-4107-01 6 25652622 25652622 C T SCGN 5'UTR 0.21 TCGA-A6-4107-01 6 25826780 25826780 C T SLC17A1 Missense_Mutation p.C39Y 0.31 tolerated(0.07) probably_damaging(0.989) TCGA-A6-4107-01 6 28543120 28543120 C A SCAND3 Missense_Mutation p.W454C 0.12 deleterious_low_confidence(0.05) benign(0.003) TCGA-A6-4107-01 6 35479442 35479442 G A TULP1 Missense_Mutation p.A111V 0.17 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-A6-4107-01 6 35479452 35479452 C A TULP1 Missense_Mutation p.V108L 0.20 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-A6-4107-01 6 46135181 46135181 C G ENPP5 Missense_Mutation p.L273F 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-A6-4107-01 6 72943496 72943496 T A RIMS1 Missense_Mutation p.L567M 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-A6-4107-01 6 72960115 72960115 G A RIMS1 Missense_Mutation p.G775E 0.25 deleterious(0) probably_damaging(0.997) TCGA-A6-4107-01 6 90047979 90047979 C G UBE2J1 Missense_Mutation p.G125R 0.13 deleterious(0) probably_damaging(1) TCGA-A6-4107-01 7 100086171 100086171 G A NYAP1 Missense_Mutation p.R276Q 0.20 tolerated(0.09) probably_damaging(0.986) TCGA-A6-4107-01 7 100355924 100355924 G A ZAN Missense_Mutation p.V1137M 0.39 unknown(0) TCGA-A6-4107-01 7 108205029 108205029 T C THAP5 Missense_Mutation p.N265S 0.10 tolerated(0.54) probably_damaging(0.991) TCGA-A6-4107-01 7 110526711 110526711 C T IMMP2L Missense_Mutation p.G116S 0.52 deleterious(0) probably_damaging(0.999) TCGA-A6-4107-01 7 113519201 113519201 C T PPP1R3A Missense_Mutation p.S649N 0.04 tolerated(1) benign(0) TCGA-A6-4107-01 7 127732015 127732044 TGAAGAGCTATTGTCTGTTTTTTCTTACAG - SND1 Splice_Site p.X890_splice 0.29 TCGA-A6-4107-01 7 129950655 129950655 C T CPA4 Silent p.S274S 0.13 TCGA-A6-4107-01 7 142630654 142630654 C A TRPV5 5'UTR 0.33 TCGA-A6-4107-01 7 150730726 150730726 C T ABCB8 Missense_Mutation p.R44W 0.30 tolerated_low_confidence(0.06) benign(0.001) TCGA-A6-4107-01 7 157959724 157959724 C T PTPRN2 Missense_Mutation p.R270H 0.23 tolerated(0.38) benign(0.002) TCGA-A6-4107-01 7 157985121 157985121 G A PTPRN2 Silent p.N149N 0.22 TCGA-A6-4107-01 7 28610053 28610053 G A CREB5 Missense_Mutation p.R121Q 0.09 tolerated(0.55) possibly_damaging(0.791) TCGA-A6-4107-01 7 72643742 72643742 C T NCF1B RNA 0.26 TCGA-A6-4107-01 7 81624256 81624256 C A CACNA2D1 Splice_Site p.X555_splice 0.10 TCGA-A6-4107-01 8 105405096 105405096 G T DPYS Missense_Mutation p.F453L 0.22 tolerated(1) benign(0) TCGA-A6-4107-01 8 139649039 139649039 C T COL22A1 Splice_Site p.X1168_splice 0.20 TCGA-A6-4107-01 8 43147869 43147869 C A POTEA RNA 0.23 TCGA-A6-4107-01 9 114305052 114305052 G A ZNF483 Missense_Mutation p.G613R 0.52 deleterious(0) probably_damaging(0.991) TCGA-A6-4107-01 9 13150663 13150663 G A MPDZ Silent p.S1159S 0.10 TCGA-A6-4107-01 9 135140042 135140042 G A SETX Nonsense_Mutation p.R2540* 0.13 TCGA-A6-4107-01 9 19619585 19619585 C T SLC24A2 Missense_Mutation p.E359K 0.14 deleterious(0) benign(0.163) TCGA-A6-4107-01 9 32633684 32633684 G A TAF1L Missense_Mutation p.R632W 0.11 deleterious(0) probably_damaging(1) TCGA-A6-4107-01 X 111698032 111698032 C T ZCCHC16 Missense_Mutation p.R26W 0.19 deleterious(0) possibly_damaging(0.533) TCGA-A6-4107-01 X 130217897 130217897 G A ARHGAP36 Missense_Mutation p.R170Q 0.20 tolerated(0.43) benign(0.033) TCGA-A6-4107-01 X 133087190 133087190 C G GPC3 Missense_Mutation p.R75T 0.07 deleterious(0) possibly_damaging(0.856) TCGA-A6-4107-01 X 151131056 151131056 G A GABRE Silent p.N134N 0.23 TCGA-A6-4107-01 X 153130562 153130562 G A L1CAM Silent p.Y951Y 0.25 TCGA-A6-4107-01 X 153219612 153219612 G T HCFC1 Missense_Mutation p.T1413K 0.16 tolerated_low_confidence(0.19) probably_damaging(0.983) TCGA-A6-4107-01 X 155006028 155006028 G C SPRY3 3'UTR 0.30 TCGA-A6-4107-01 X 21675820 21675820 G A KLHL34 Silent p.C29C 0.24 TCGA-A6-4107-01 X 35938048 35938048 G A CXorf22 Silent p.P44P 0.20 TCGA-A6-4107-01 X 67454427 67454427 G A OPHN1 Missense_Mutation p.R130W 0.27 deleterious(0.03) probably_damaging(0.969) TCGA-A6-4107-01 X 78012499 78012499 C T LPAR4 3'UTR 0.07 TCGA-A6-4107-01 X 79932373 79932373 C A BRWD3 Missense_Mutation p.G1715V 0.11 tolerated_low_confidence(0.06) unknown(0) TCGA-A6-4107-01 X 84614605 84614606 - AG POF1B Frame_Shift_Ins p.T130Lfs*12 0.09 TCGA-A6-5656-01 10 100021866 100021866 C T LOXL4 Missense_Mutation p.V128I 0.33 tolerated(0.08) benign(0.081) TCGA-A6-5656-01 10 120832557 120832559 AGG - EIF3A In_Frame_Del p.L129del 0.38 TCGA-A6-5656-01 10 124691934 124691934 G A C10orf88 3'UTR 0.45 TCGA-A6-5656-01 10 125769742 125769742 G A CHST15 Missense_Mutation p.R537W 0.35 tolerated(0.06) benign(0.003) TCGA-A6-5656-01 10 134756028 134756028 C T TTC40 5'UTR 0.10 TCGA-A6-5656-01 10 27443220 27443220 C T YME1L1 5'UTR 0.14 TCGA-A6-5656-01 10 37422917 37422917 G A ANKRD30A Missense_Mutation p.V175I 0.41 tolerated(0.5) benign(0.01) TCGA-A6-5656-01 10 50857612 50857612 C T CHAT Missense_Mutation p.R481W 0.36 deleterious(0) probably_damaging(0.996) TCGA-A6-5656-01 10 55582471 55582471 G T PCDH15 Missense_Mutation p.S1674Y 0.29 deleterious_low_confidence(0) benign(0.211) TCGA-A6-5656-01 10 56138649 56138649 G T PCDH15 Missense_Mutation p.P71T 0.35 tolerated(0.1) benign(0.258) TCGA-A6-5656-01 10 72360296 72360296 C T PRF1 Silent p.A121A 0.43 TCGA-A6-5656-01 10 73765529 73765529 G A CHST3 5'UTR 0.09 TCGA-A6-5656-01 10 79163623 79163623 G T KCNMA1 Silent p.V179V 0.09 TCGA-A6-5656-01 10 87966159 87966159 C T GRID1 Missense_Mutation p.R161H 0.39 tolerated(0.22) benign(0.011) TCGA-A6-5656-01 11 118899056 118899056 G A SLC37A4 Missense_Mutation p.R77C 0.82 deleterious(0) probably_damaging(0.992) TCGA-A6-5656-01 11 17653698 17653698 G A OTOG Missense_Mutation p.V2345M 0.34 probably_damaging(1) TCGA-A6-5656-01 11 31327276 31327276 G A DCDC1 Nonsense_Mutation p.R214* 0.42 TCGA-A6-5656-01 11 4142950 4142950 T C RRM1 Silent p.A331A 0.34 TCGA-A6-5656-01 11 48239117 48239117 T C OR4B1 Silent p.A252A 0.63 TCGA-A6-5656-01 11 56000180 56000180 C G OR5T2 Missense_Mutation p.R161P 0.68 deleterious(0) benign(0.134) TCGA-A6-5656-01 11 56258039 56258039 C A OR5M8 Missense_Mutation p.G270C 0.68 deleterious(0) probably_damaging(0.992) TCGA-A6-5656-01 11 57472461 57472461 C T MED19 Missense_Mutation p.R153H 0.24 deleterious(0) probably_damaging(0.988) TCGA-A6-5656-01 11 6636211 6636211 T C TPP1 Silent p.P479P 0.37 TCGA-A6-5656-01 11 69972212 69972212 C T ANO1 Silent p.G336G 0.07 TCGA-A6-5656-01 12 110345418 110345418 G T TCHP Nonsense_Mutation p.E205* 0.41 TCGA-A6-5656-01 12 113770528 113770528 G T SLC8B1 Missense_Mutation p.D52E 0.06 tolerated(0.31) benign(0.02) TCGA-A6-5656-01 12 115117353 115117353 G C TBX3 Missense_Mutation p.P274R 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-A6-5656-01 12 131439192 131439192 G A GPR133 Silent p.S30S 0.40 TCGA-A6-5656-01 12 14778709 14778709 T C GUCY2C Missense_Mutation p.N797S 0.05 tolerated(0.09) probably_damaging(0.994) TCGA-A6-5656-01 12 19418750 19418750 C A PLEKHA5 Missense_Mutation p.S226Y 0.36 deleterious(0.01) possibly_damaging(0.838) TCGA-A6-5656-01 12 5153429 5153429 C T KCNA5 Missense_Mutation p.T39M 0.44 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-A6-5656-01 12 51754522 51754522 C T GALNT6 Missense_Mutation p.V384M 0.35 deleterious(0.03) possibly_damaging(0.898) TCGA-A6-5656-01 12 52756661 52756661 C T KRT85 Missense_Mutation p.E352K 0.35 deleterious(0.02) probably_damaging(0.988) TCGA-A6-5656-01 12 53091677 53091677 G A KRT77 Nonsense_Mutation p.R183* 0.29 TCGA-A6-5656-01 12 53433508 53433508 C G EIF4B Intron 0.30 TCGA-A6-5656-01 12 58088058 58088058 G A OS9 Silent p.E38E 0.33 TCGA-A6-5656-01 12 7053754 7053754 C T C12orf57 Silent p.P56P 0.46 TCGA-A6-5656-01 13 113803428 113803428 C T F10 Missense_Mutation p.T355M 0.32 deleterious(0.03) probably_damaging(0.97) TCGA-A6-5656-01 13 25283938 25283938 A C ATP12A Missense_Mutation p.D918A 0.38 deleterious(0.01) benign(0.34) TCGA-A6-5656-01 13 46142524 46142524 A C FAM194B Missense_Mutation p.N371K 0.51 tolerated(0.75) benign(0.008) TCGA-A6-5656-01 13 93879618 93879618 C T GPC6 5'UTR 0.33 TCGA-A6-5656-01 13 99379096 99379096 C T SLC15A1 Splice_Site p.X7_splice 0.56 TCGA-A6-5656-01 14 65453558 65453558 C A FNTB 5'UTR 0.31 TCGA-A6-5656-01 14 75506646 75506646 G C MLH3 Missense_Mutation p.R1180G 0.09 deleterious(0) probably_damaging(1) TCGA-A6-5656-01 14 90650864 90650864 C T KCNK13 Silent p.N248N 0.75 TCGA-A6-5656-01 15 79339114 79339114 G A RASGRF1 Silent p.D284D 0.39 TCGA-A6-5656-01 16 30036617 30036617 C T FAM57B Missense_Mutation p.A238T 0.46 tolerated(0.2) benign(0.161) TCGA-A6-5656-01 16 48141234 48141234 C T ABCC12 Missense_Mutation p.R825Q 0.43 tolerated(0.26) benign(0.004) TCGA-A6-5656-01 16 58324941 58324941 G C PRSS54 Missense_Mutation p.S62C 0.28 deleterious(0.04) probably_damaging(0.962) TCGA-A6-5656-01 16 68335426 68335426 C T SLC7A6 3'UTR 0.56 TCGA-A6-5656-01 16 84256624 84256624 G A KCNG4 Silent p.G253G 0.31 TCGA-A6-5656-01 17 19035987 19035987 C T GRAPL Silent p.Y37Y 0.88 TCGA-A6-5656-01 17 29850963 29850963 A G RAB11FIP4 Missense_Mutation p.N361S 0.32 tolerated(0.32) benign(0.02) TCGA-A6-5656-01 17 33521191 33521191 C G SLC35G3 Missense_Mutation p.G46R 0.07 deleterious(0) probably_damaging(0.969) TCGA-A6-5656-01 17 35656252 35656252 C G ACACA Intron 0.05 TCGA-A6-5656-01 17 42800365 42800365 C T DBF4B Missense_Mutation p.T67M 0.55 tolerated(0.07) benign(0.216) TCGA-A6-5656-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.76 deleterious(0) probably_damaging(0.997) TCGA-A6-5656-01 17 7836596 7836596 G A CNTROB Missense_Mutation p.G67R 0.68 tolerated(0.65) benign(0.001) TCGA-A6-5656-01 18 31538257 31538257 C T NOL4 Silent p.S394S 0.10 TCGA-A6-5656-01 18 55833062 55833062 G A NEDD4L Missense_Mutation p.D31N 0.11 tolerated(0.49) possibly_damaging(0.754) TCGA-A6-5656-01 18 580391 580391 G A CETN1 5'UTR 0.81 TCGA-A6-5656-01 18 59925283 59925285 ATT - KIAA1468 In_Frame_Del p.I667del 0.74 TCGA-A6-5656-01 19 10079084 10079084 G A COL5A3 Missense_Mutation p.P1431S 0.39 unknown(0) TCGA-A6-5656-01 19 16989497 16989497 C T SIN3B Missense_Mutation p.R1150C 0.41 deleterious(0.02) probably_damaging(0.932) TCGA-A6-5656-01 19 21365715 21365715 T C ZNF431 Silent p.P203P 0.41 TCGA-A6-5656-01 19 30018184 30018184 C T VSTM2B Missense_Mutation p.A50V 0.37 deleterious(0) probably_damaging(0.996) TCGA-A6-5656-01 19 31768255 31768255 G A TSHZ3 Missense_Mutation p.P815L 0.38 deleterious(0.04) benign(0.026) TCGA-A6-5656-01 19 3586991 3586991 C T GIPC3 Silent p.F197F 0.43 TCGA-A6-5656-01 19 36024495 36024495 G A GAPDHS Silent p.P22P 0.64 TCGA-A6-5656-01 19 367119 367119 C T THEG Missense_Mutation p.V287M 0.39 tolerated(1) benign(0.003) TCGA-A6-5656-01 19 39016036 39016036 C T RYR1 Missense_Mutation p.T3507M 0.34 benign(0.202) TCGA-A6-5656-01 19 42791307 42791307 C TT CIC Frame_Shift_Ins p.P123Ffs*21 0.37 TCGA-A6-5656-01 19 44276244 44276244 G T KCNN4 Missense_Mutation p.L243M 0.06 tolerated(0.17) probably_damaging(0.975) TCGA-A6-5656-01 19 44738969 44738969 G A ZNF227 Missense_Mutation p.R129K 0.35 tolerated(0.22) benign(0.001) TCGA-A6-5656-01 19 48305356 48305356 C T TPRX1 Silent p.P304P 0.36 TCGA-A6-5656-01 19 49106987 49106987 C T FAM83E Missense_Mutation p.V314M 0.33 deleterious(0) probably_damaging(0.975) TCGA-A6-5656-01 19 58868369 58868369 C T ZNF497 Silent p.T211T 0.41 TCGA-A6-5656-01 1 120839624 120839624 G A FAM72B 5'UTR 0.06 TCGA-A6-5656-01 1 152538448 152538448 G A LCE3E Silent p.G79G 0.41 TCGA-A6-5656-01 1 159283478 159283478 C T OR10J3 Silent p.A324A 0.35 TCGA-A6-5656-01 1 159888967 159888967 A C TAGLN2 Intron 0.41 TCGA-A6-5656-01 1 166891884 166891884 C T ILDR2 Missense_Mutation p.R386H 0.43 tolerated(0.07) benign(0.041) TCGA-A6-5656-01 1 186077642 186077642 A G HMCN1 Silent p.L3634L 0.06 TCGA-A6-5656-01 1 193149689 193149689 C T B3GALT2 Missense_Mutation p.R335H 0.38 deleterious(0.03) probably_damaging(0.982) TCGA-A6-5656-01 1 197313459 197313459 T C CRB1 Missense_Mutation p.L234S 0.42 deleterious(0.03) possibly_damaging(0.857) TCGA-A6-5656-01 1 204423806 204423806 C T PIK3C2B Nonsense_Mutation p.W686* 0.27 TCGA-A6-5656-01 1 214819512 214819512 T C CENPF Missense_Mutation p.V2200A 0.41 benign(0.001) TCGA-A6-5656-01 1 220231240 220231240 C T BPNT1 3'UTR 0.34 TCGA-A6-5656-01 1 220287725 220287725 C T IARS2 Missense_Mutation p.R517W 0.44 deleterious(0) probably_damaging(1) TCGA-A6-5656-01 1 39903562 39903562 C T MACF1 Silent p.D3975D 0.34 TCGA-A6-5656-01 1 84944957 84944957 C A RPF1 5'UTR 0.04 TCGA-A6-5656-01 20 33874928 33874928 C T FAM83C Missense_Mutation p.D552N 0.75 tolerated_low_confidence(0.07) benign(0) TCGA-A6-5656-01 20 36572579 36572579 C T VSTM2L Missense_Mutation p.A180V 0.74 tolerated(0.27) benign(0.005) TCGA-A6-5656-01 20 39990778 39990778 G A EMILIN3 Silent p.L477L 0.77 TCGA-A6-5656-01 20 56285587 56285587 C - PMEPA1 5'Flank 0.15 TCGA-A6-5656-01 20 58342380 58342380 G T PHACTR3 Missense_Mutation p.Q227H 0.23 tolerated(0.3) possibly_damaging(0.695) TCGA-A6-5656-01 20 61637551 61637551 C T BHLHE23 Silent p.A176A 0.06 TCGA-A6-5656-01 20 61950885 61950885 C T COL20A1 Silent p.A951A 0.74 TCGA-A6-5656-01 21 46685744 46685744 G A POFUT2 Intron 0.30 TCGA-A6-5656-01 22 20459344 20459344 G A RIMBP3 Missense_Mutation p.S653F 0.41 deleterious(0) benign(0.013) TCGA-A6-5656-01 22 21140317 21140317 T A SERPIND1 Missense_Mutation p.F397I 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5656-01 22 41636917 41636917 C T CHADL 5'UTR 0.39 TCGA-A6-5656-01 2 113146905 113146905 G A RGPD8 Missense_Mutation p.T1206I 0.39 tolerated(0.12) possibly_damaging(0.459) TCGA-A6-5656-01 2 135309654 135309654 C T TMEM163 Missense_Mutation p.V111I 0.37 tolerated(0.63) benign(0.001) TCGA-A6-5656-01 2 166894608 166894608 G A SCN1A Missense_Mutation p.T875M 0.51 deleterious(0.03) probably_damaging(0.996) TCGA-A6-5656-01 2 179456782 179456782 C T TTN Missense_Mutation p.R19950Q 0.64 TCGA-A6-5656-01 2 218682830 218682830 C T TNS1 Missense_Mutation p.G1305R 0.24 tolerated(0.06) benign(0.292) TCGA-A6-5656-01 2 231331885 231331885 G A SP100 Missense_Mutation p.A416T 0.69 tolerated(0.71) benign(0.034) TCGA-A6-5656-01 2 239049488 239049488 G C KLHL30 Missense_Mutation p.K31N 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-A6-5656-01 2 24051734 24051734 C T ATAD2B Missense_Mutation p.A602T 0.44 deleterious(0) possibly_damaging(0.838) TCGA-A6-5656-01 2 26596462 26596462 C A EPT1 Missense_Mutation p.L180I 0.05 deleterious(0) probably_damaging(0.977) TCGA-A6-5656-01 2 61259022 61259022 T A PEX13 Silent p.T187T 0.40 TCGA-A6-5656-01 3 107096887 107096887 G A CCDC54 Silent p.T151T 0.38 TCGA-A6-5656-01 3 119121107 119121107 G A ARHGAP31 Missense_Mutation p.S503N 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-A6-5656-01 3 128182309 128182309 G T DNAJB8 5'UTR 0.38 TCGA-A6-5656-01 3 186268998 186268998 G A TBCCD1 Missense_Mutation p.R539C 0.38 deleterious(0) possibly_damaging(0.556) TCGA-A6-5656-01 3 36485079 36485079 A T STAC Missense_Mutation p.E112V 0.50 deleterious(0) probably_damaging(0.995) TCGA-A6-5656-01 3 4712594 4712594 G A ITPR1 Missense_Mutation p.V715I 0.41 tolerated(0.41) benign(0.01) TCGA-A6-5656-01 3 48348476 48348476 G A SPINK8 3'UTR 0.37 TCGA-A6-5656-01 3 48680243 48680243 G A CELSR3 Silent p.T2827T 0.38 TCGA-A6-5656-01 3 52378607 52378619 AGACCTTCTCCTA - DNAH1 Frame_Shift_Del p.E463Afs*18 0.45 TCGA-A6-5656-01 4 159048444 159048444 C T FAM198B 3'UTR 0.21 TCGA-A6-5656-01 4 184930896 184930896 C T STOX2 Missense_Mutation p.T302M 0.42 tolerated(0.05) benign(0.011) TCGA-A6-5656-01 4 25270095 25270095 C G PI4K2B Missense_Mutation p.A370G 0.37 deleterious(0) probably_damaging(0.995) TCGA-A6-5656-01 4 5862865 5862865 G A CRMP1 Silent p.P181P 0.26 TCGA-A6-5656-01 4 71201006 71201006 G A CABS1 Missense_Mutation p.D84N 0.38 tolerated(0.78) benign(0.006) TCGA-A6-5656-01 5 112164616 112164616 C T APC Nonsense_Mutation p.R564* 0.35 TCGA-A6-5656-01 5 112175605 112175605 A - APC Frame_Shift_Del p.P1439Lfs*34 0.22 TCGA-A6-5656-01 5 140176316 140176316 C T PCDHA2 Silent p.H589H 0.42 TCGA-A6-5656-01 5 140480416 140480416 G A PCDHB3 Silent p.A61A 0.05 TCGA-A6-5656-01 5 140768431 140768431 C T PCDHGB4 Missense_Mutation p.A327V 0.33 deleterious(0.04) possibly_damaging(0.842) TCGA-A6-5656-01 5 140769067 140769067 C T PCDHGB4 Missense_Mutation p.A539V 0.36 tolerated(0.06) benign(0.292) TCGA-A6-5656-01 5 148695457 148695457 G A AFAP1L1 Missense_Mutation p.R365H 0.37 tolerated(0.48) benign(0.002) TCGA-A6-5656-01 5 156349124 156349124 G A TIMD4 Missense_Mutation p.A333V 0.34 tolerated(0.16) benign(0.325) TCGA-A6-5656-01 5 156533949 156533949 G A HAVCR2 Missense_Mutation p.A28V 0.44 tolerated(0.47) benign(0.004) TCGA-A6-5656-01 5 176720848 176720848 C T NSD1 Missense_Mutation p.P2160L 0.19 deleterious(0) probably_damaging(1) TCGA-A6-5656-01 5 178199577 178199577 G A AACSP1 RNA 0.33 TCGA-A6-5656-01 5 178410152 178410152 G A GRM6 Missense_Mutation p.T732M 0.06 tolerated(0.07) probably_damaging(0.954) TCGA-A6-5656-01 5 178581178 178581178 G A ADAMTS2 Silent p.H418H 0.44 TCGA-A6-5656-01 5 194843 194843 G A LRRC14B Missense_Mutation p.R307Q 0.33 tolerated(0.3) benign(0.043) TCGA-A6-5656-01 5 33937381 33937381 C T RXFP3 Missense_Mutation p.T179M 0.33 deleterious(0) possibly_damaging(0.616) TCGA-A6-5656-01 5 67586561 67586561 A G PIK3R1 Intron 0.38 TCGA-A6-5656-01 6 100838915 100838915 C T SIM1 Silent p.S541S 0.35 TCGA-A6-5656-01 6 101847134 101847134 C T GRIK2 5'UTR 0.38 TCGA-A6-5656-01 6 107475761 107475761 C T PDSS2 3'UTR 0.31 TCGA-A6-5656-01 6 108508677 108508677 A C NR2E1 3'UTR 0.20 TCGA-A6-5656-01 6 10876690 10876690 C T GCM2 Silent p.A148A 0.40 TCGA-A6-5656-01 6 132945368 132945368 G T TAAR2 Missense_Mutation p.T16K 0.04 deleterious(0.03) benign(0.001) TCGA-A6-5656-01 6 169621526 169621526 T G THBS2 Silent p.R1124R 0.36 TCGA-A6-5656-01 6 31732300 31732300 C T SAPCD1 Missense_Mutation p.R177C 0.32 tolerated_low_confidence(0.13) possibly_damaging(0.528) TCGA-A6-5656-01 6 32024468 32024468 C T TNXB Missense_Mutation p.G2680R 0.33 benign(0.003) TCGA-A6-5656-01 6 56476346 56476346 G A DST Missense_Mutation p.L1166F 0.05 possibly_damaging(0.786) TCGA-A6-5656-01 7 100175001 100175001 G A LRCH4 Missense_Mutation p.P397L 0.58 tolerated(0.26) benign(0.016) TCGA-A6-5656-01 7 117864829 117864829 G A ANKRD7 5'UTR 0.56 TCGA-A6-5656-01 7 14661040 14661040 C T DGKB Missense_Mutation p.R417K 0.55 tolerated(0.78) benign(0.004) TCGA-A6-5656-01 7 20824022 20824022 C T SP8 Missense_Mutation p.G472S 0.36 tolerated(0.29) benign(0.005) TCGA-A6-5656-01 7 30094375 30094375 G T PLEKHA8 Missense_Mutation p.D283Y 0.30 deleterious(0.02) benign(0.128) TCGA-A6-5656-01 7 39247038 39247038 G T POU6F2 Missense_Mutation p.M110I 0.24 deleterious(0.03) benign(0.432) TCGA-A6-5656-01 7 43590168 43590168 C T HECW1 Missense_Mutation p.A1458V 0.53 deleterious(0.01) possibly_damaging(0.71) TCGA-A6-5656-01 7 6502655 6502655 T C KDELR2 3'UTR 0.61 TCGA-A6-5656-01 8 105456563 105456563 T C DPYS Missense_Mutation p.I236V 0.04 tolerated(0.08) benign(0.365) TCGA-A6-5656-01 8 118830694 118830694 C T EXT1 Missense_Mutation p.V538I 0.19 tolerated(0.23) benign(0.396) TCGA-A6-5656-01 8 143625781 143625781 G A BAI1 3'UTR 0.19 TCGA-A6-5656-01 8 144660088 144660088 C A NAPRT1 Silent p.L84L 0.19 TCGA-A6-5656-01 8 24774871 24774872 - GAA NEFM In_Frame_Ins p.E505dup 0.32 TCGA-A6-5656-01 8 39068690 39068690 C A ADAM32 Missense_Mutation p.S360R 0.72 deleterious(0.02) probably_damaging(1) TCGA-A6-5656-01 8 57228832 57228832 A G SDR16C5 Silent p.A25A 0.03 TCGA-A6-5656-01 9 43861162 43861162 G A CNTNAP3B Missense_Mutation p.R679Q 0.18 tolerated(0.12) benign(0) TCGA-A6-5656-01 X 101817756 101817756 T C NXF4 RNA 0.21 TCGA-A6-5656-01 X 110653383 110653383 C T DCX Missense_Mutation p.A163T 0.87 deleterious(0.05) possibly_damaging(0.674) TCGA-A6-5656-01 X 115306217 115306217 T G AGTR2 3'UTR 0.10 TCGA-A6-5656-01 X 154158194 154158195 - T F8 Frame_Shift_Ins p.G1291Rfs*29 0.41 TCGA-A6-5657-01 10 123844544 123844544 C T TACC2 Silent p.D843D 0.18 TCGA-A6-5657-01 10 21461365 21461365 C A NEBL-AS1 5'Flank 0.16 TCGA-A6-5657-01 10 55826641 55826641 G A PCDH15 Missense_Mutation p.S699L 0.18 deleterious(0) probably_damaging(0.933) TCGA-A6-5657-01 10 70450875 70450875 C T TET1 Silent p.G1905G 0.19 TCGA-A6-5657-01 10 99341076 99341079 GACT - ANKRD2 Frame_Shift_Del p.D214Afs*13 0.10 TCGA-A6-5657-01 11 111750294 111750294 T G C11orf1 Missense_Mutation p.S4A 0.14 tolerated_low_confidence(0.17) benign(0.003) TCGA-A6-5657-01 11 117030651 117030651 A T PAFAH1B2 Missense_Mutation p.H28L 0.17 deleterious(0) probably_damaging(0.974) TCGA-A6-5657-01 11 1263134 1263134 C T MUC5B Missense_Mutation p.T1675M 0.12 unknown(0) TCGA-A6-5657-01 11 17428485 17428485 C T ABCC8 Missense_Mutation p.D1038N 0.14 deleterious(0.04) benign(0.021) TCGA-A6-5657-01 11 58331642 58331642 C T LPXN Silent p.E73E 0.13 TCGA-A6-5657-01 11 69482288 69482288 C T ORAOV1 Silent p.%3D 0.16 TCGA-A6-5657-01 11 7111190 7111190 G A RBMXL2 Missense_Mutation p.R280Q 0.16 deleterious(0) benign(0.001) TCGA-A6-5657-01 11 82877699 82877699 A C PCF11 Missense_Mutation p.N587T 0.13 deleterious(0.01) benign(0.05) TCGA-A6-5657-01 12 100934553 100934553 G A NR1H4 Silent p.P355P 0.12 TCGA-A6-5657-01 12 105151610 105151610 C A CHST11 3'UTR 0.10 TCGA-A6-5657-01 12 108147808 108147808 C T PRDM4 Missense_Mutation p.G75D 0.17 deleterious_low_confidence(0) benign(0.39) TCGA-A6-5657-01 12 121174872 121174872 C T ACADS Silent p.Y98Y 0.21 TCGA-A6-5657-01 12 122213015 122213015 C T TMEM120B Silent p.H295H 0.12 TCGA-A6-5657-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.15 deleterious(0.03) possibly_damaging(0.644) TCGA-A6-5657-01 12 40761683 40761683 A T LRRK2 3'UTR 0.14 TCGA-A6-5657-01 12 52714859 52714859 C T KRT83 Silent p.S87S 0.12 TCGA-A6-5657-01 12 53292278 53292278 T C KRT8 Missense_Mutation p.S438G 0.11 deleterious(0) possibly_damaging(0.904) TCGA-A6-5657-01 12 63964593 63964593 G A DPY19L2 Silent p.L649L 0.14 TCGA-A6-5657-01 12 80645529 80645529 C T OTOGL Missense_Mutation p.S361F 0.14 deleterious(0) probably_damaging(0.999) TCGA-A6-5657-01 14 24845826 24845826 C T NFATC4 Missense_Mutation p.R858W 0.19 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-A6-5657-01 14 39308072 39308072 C T LINC00639 RNA 0.23 TCGA-A6-5657-01 14 65009645 65009645 A C HSPA2 3'UTR 0.14 TCGA-A6-5657-01 15 26825489 26825489 G A GABRB3 Missense_Mutation p.S220L 0.13 deleterious(0.04) probably_damaging(0.954) TCGA-A6-5657-01 15 41657718 41657718 G C NUSAP1 Missense_Mutation p.S260T 0.15 tolerated(0.19) benign(0.096) TCGA-A6-5657-01 15 49584635 49584635 C T GALK2 Missense_Mutation p.L290F 0.15 tolerated(0.19) benign(0.284) TCGA-A6-5657-01 15 78390827 78390827 C T SH2D7 Silent p.P178P 0.21 TCGA-A6-5657-01 16 18812831 18812831 A C ARL6IP1 5'UTR 0.17 TCGA-A6-5657-01 16 2225596 2225596 G T TRAF7 Silent p.L533L 0.35 TCGA-A6-5657-01 16 2514544 2514544 C T C16orf59 Missense_Mutation p.P393S 0.16 deleterious(0) probably_damaging(0.998) TCGA-A6-5657-01 16 30484160 30484160 T G ITGAL Translation_Start_Site p.M1? 0.11 deleterious(0) benign(0.027) TCGA-A6-5657-01 16 66430010 66430010 A C CDH5 Silent p.T422T 0.14 TCGA-A6-5657-01 16 70917835 70917835 C A HYDIN Missense_Mutation p.A3323S 0.23 possibly_damaging(0.866) TCGA-A6-5657-01 16 88958758 88958758 C T CBFA2T3 Missense_Mutation p.R172Q 0.16 deleterious(0.02) possibly_damaging(0.677) TCGA-A6-5657-01 17 11572690 11572690 G T DNAH9 Missense_Mutation p.D978Y 0.16 possibly_damaging(0.713) TCGA-A6-5657-01 17 33679779 33679779 C T SLFN11 Missense_Mutation p.E768K 0.12 tolerated(0.71) benign(0.006) TCGA-A6-5657-01 17 42152400 42152400 G A G6PC3 Silent p.S160S 0.14 TCGA-A6-5657-01 17 49302554 49302554 C T MBTD1 5'UTR 0.22 TCGA-A6-5657-01 17 60814041 60814041 C T MARCH10 Silent p.A396A 0.16 TCGA-A6-5657-01 17 74274186 74274186 C T QRICH2 Silent p.K1501K 0.22 TCGA-A6-5657-01 18 24081147 24081147 C A KCTD1 Missense_Mutation p.G18V 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-5657-01 19 1226602 1226602 G T STK11 Missense_Mutation p.A420S 0.27 tolerated(0.44) benign(0.005) TCGA-A6-5657-01 19 33608841 33608841 C T GPATCH1 Silent p.S769S 0.08 TCGA-A6-5657-01 19 40382684 40382684 G A FCGBP Missense_Mutation p.P3401L 0.06 probably_damaging(0.913) TCGA-A6-5657-01 19 44384223 44384223 C T ZNF404 Silent p.S25S 0.10 TCGA-A6-5657-01 19 47979858 47979858 G A KPTN Silent p.H371H 0.12 TCGA-A6-5657-01 19 49464096 49464096 C G BAX Missense_Mutation p.I133M 0.33 deleterious(0) probably_damaging(0.956) TCGA-A6-5657-01 19 53794868 53794868 G T BIRC8 5'UTR 0.26 TCGA-A6-5657-01 19 54723744 54723744 G A LILRB3 Intron 0.16 TCGA-A6-5657-01 19 58578537 58578537 C A ZNF135 Missense_Mutation p.L253I 0.28 deleterious(0.02) probably_damaging(0.988) TCGA-A6-5657-01 1 154524882 154524882 G A UBE2Q1 Silent p.L291L 0.13 TCGA-A6-5657-01 1 155218028 155218028 C T FAM189B Missense_Mutation p.R549Q 0.17 tolerated(0.39) benign(0.109) TCGA-A6-5657-01 1 181701980 181701980 C T CACNA1E Missense_Mutation p.R920C 0.11 deleterious(0.03) possibly_damaging(0.689) TCGA-A6-5657-01 1 228503605 228503605 C T OBSCN Missense_Mutation p.A5314V 0.12 probably_damaging(0.999) TCGA-A6-5657-01 1 229644053 229644053 G A NUP133 5'UTR 0.17 TCGA-A6-5657-01 1 26646688 26646688 C T CD52 Silent p.N27N 0.14 TCGA-A6-5657-01 1 29435945 29435945 C - EPB41 Frame_Shift_Del p.K805Rfs*3 0.19 TCGA-A6-5657-01 1 55591191 55591191 C T USP24 Silent p.T1254T 0.17 TCGA-A6-5657-01 1 59248108 59248108 G A JUN Missense_Mutation p.P212L 0.20 tolerated(0.3) benign(0.403) TCGA-A6-5657-01 1 6681587 6681587 A T PHF13 Nonsense_Mutation p.K265* 0.10 TCGA-A6-5657-01 1 82431837 82431837 G T LPHN2 Missense_Mutation p.A688S 0.16 tolerated(0.21) benign(0.031) TCGA-A6-5657-01 1 91403943 91403943 C T ZNF644 Missense_Mutation p.G990R 0.14 deleterious(0.03) probably_damaging(1) TCGA-A6-5657-01 1 93307405 93307405 C T RPL5 Missense_Mutation p.R293W 0.19 tolerated(0.14) possibly_damaging(0.898) TCGA-A6-5657-01 20 55758854 55758854 C T BMP7 Silent p.T294T 0.24 TCGA-A6-5657-01 20 60448860 60448860 C T CDH4 Silent p.I318I 0.10 TCGA-A6-5657-01 20 825707 825707 C T FAM110A Missense_Mutation p.T87M 0.23 deleterious(0.01) possibly_damaging(0.887) TCGA-A6-5657-01 21 30331911 30331911 G A LTN1 Missense_Mutation p.S867F 0.16 deleterious(0) probably_damaging(0.938) TCGA-A6-5657-01 21 32492772 32492772 C A TIAM1 Nonsense_Mutation p.G1564* 0.13 TCGA-A6-5657-01 21 41561158 41561158 C T DSCAM Silent p.A788A 0.19 TCGA-A6-5657-01 21 41711216 41711216 G A DSCAM Missense_Mutation p.P446L 0.10 deleterious(0.04) possibly_damaging(0.855) TCGA-A6-5657-01 22 24123589 24123589 C T MMP11 Silent p.F356F 0.11 TCGA-A6-5657-01 22 40054983 40054983 G A CACNA1I Missense_Mutation p.R731Q 0.12 deleterious(0) possibly_damaging(0.553) TCGA-A6-5657-01 22 50636521 50636521 G A TRABD Missense_Mutation p.V288I 0.20 tolerated(0.33) benign(0.021) TCGA-A6-5657-01 2 11054260 11054260 C T KCNF1 3'UTR 0.21 TCGA-A6-5657-01 2 114715166 114715166 G T ACTR3 3'UTR 0.16 TCGA-A6-5657-01 2 116497337 116497337 C T DPP10 Silent p.I244I 0.15 TCGA-A6-5657-01 2 152550885 152550885 G A NEB Silent p.D616D 0.13 TCGA-A6-5657-01 2 179481719 179481719 C G TTN Missense_Mutation p.S15966T 0.16 TCGA-A6-5657-01 2 179621522 179621522 G T TTN Missense_Mutation p.Q3561K 0.14 TCGA-A6-5657-01 2 210769618 210769618 G A UNC80 Missense_Mutation p.D1505N 0.12 possibly_damaging(0.879) TCGA-A6-5657-01 2 220422625 220422625 G T OBSL1 Missense_Mutation p.P1237Q 0.14 tolerated(0.22) possibly_damaging(0.866) TCGA-A6-5657-01 2 232071000 232071000 G C ARMC9 Missense_Mutation p.E17Q 0.06 tolerated(0.07) probably_damaging(0.992) TCGA-A6-5657-01 2 27826159 27826159 G A ZNF512 Silent p.R307R 0.18 TCGA-A6-5657-01 2 70933534 70933534 C T ADD2 Missense_Mutation p.E3K 0.16 tolerated(0.46) benign(0.012) TCGA-A6-5657-01 3 146323222 146323222 A G PLSCR5 5'UTR 0.18 TCGA-A6-5657-01 3 149095447 149095447 T C TM4SF1 5'UTR 0.12 TCGA-A6-5657-01 3 154147154 154147154 G A GPR149 Missense_Mutation p.S84L 0.19 deleterious(0) possibly_damaging(0.819) TCGA-A6-5657-01 3 156422986 156422986 G A TIPARP 3'UTR 0.08 TCGA-A6-5657-01 3 158384509 158384509 C G LXN Missense_Mutation p.V199L 0.14 tolerated(0.08) benign(0.109) TCGA-A6-5657-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.15 deleterious(0.02) probably_damaging(0.959) TCGA-A6-5657-01 3 196051015 196051015 C A TM4SF19 Intron 0.19 TCGA-A6-5657-01 3 49885575 49885575 C T TRAIP Splice_Site p.X52_splice 0.18 TCGA-A6-5657-01 4 101396219 101396219 T C EMCN Missense_Mutation p.T79A 0.15 tolerated(0.79) possibly_damaging(0.781) TCGA-A6-5657-01 4 153244092 153244092 G A FBXW7 Missense_Mutation p.R689W 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-5657-01 4 162459423 162459423 C T FSTL5 Missense_Mutation p.V403M 0.18 deleterious(0) probably_damaging(0.996) TCGA-A6-5657-01 4 20529994 20529994 C T SLIT2 Intron 0.16 TCGA-A6-5657-01 4 68606401 68606401 G A GNRHR Missense_Mutation p.R262W 0.14 deleterious(0) probably_damaging(0.998) TCGA-A6-5657-01 4 71508387 71508387 C T ENAM Missense_Mutation p.T415I 0.19 deleterious(0.05) possibly_damaging(0.631) TCGA-A6-5657-01 4 77305458 77305458 G T CCDC158 Missense_Mutation p.T170K 0.14 deleterious(0.01) benign(0.049) TCGA-A6-5657-01 4 8603051 8603051 G A CPZ Missense_Mutation p.R108Q 0.13 tolerated(0.15) possibly_damaging(0.49) TCGA-A6-5657-01 4 88537410 88537410 G A DSPP Missense_Mutation p.S1199N 0.18 unknown(0) TCGA-A6-5657-01 4 88732710 88732710 G A IBSP Missense_Mutation p.G201E 0.13 tolerated(0.76) probably_damaging(0.939) TCGA-A6-5657-01 5 112174241 112174241 G T APC Nonsense_Mutation p.E984* 0.17 TCGA-A6-5657-01 5 112175772 112175773 - AAGT APC Frame_Shift_Ins p.T1496Kfs*19 0.12 TCGA-A6-5657-01 5 118965471 118965471 G A FAM170A Missense_Mutation p.R3Q 0.08 tolerated(0.25) benign(0.089) TCGA-A6-5657-01 5 122911458 122911459 - AT CSNK1G3 Frame_Shift_Ins p.R161Tfs*4 0.12 TCGA-A6-5657-01 5 137625234 137625234 C T CDC25C Missense_Mutation p.V295M 0.16 deleterious(0.01) benign(0.126) TCGA-A6-5657-01 5 138240092 138240092 C T CTNNA1 Nonsense_Mutation p.R451* 0.14 TCGA-A6-5657-01 5 13870934 13870934 G A DNAH5 Missense_Mutation p.A1259V 0.16 possibly_damaging(0.499) TCGA-A6-5657-01 5 140176432 140176432 C T PCDHA2 Missense_Mutation p.T628M 0.16 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-A6-5657-01 5 169805848 169805848 C T KCNMB1 Missense_Mutation p.V146I 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-A6-5657-01 5 178771020 178771020 G A ADAMTS2 Silent p.T94T 0.11 TCGA-A6-5657-01 5 41004506 41004506 C T MROH2B Missense_Mutation p.R1379Q 0.17 tolerated(0.08) benign(0.109) TCGA-A6-5657-01 5 41510610 41510611 - C PLCXD3 Frame_Shift_Ins p.K7Efs*32 0.19 TCGA-A6-5657-01 5 63510248 63510248 G A RNF180 Silent p.L365L 0.10 TCGA-A6-5657-01 5 6491483 6491483 C T UBE2QL1 3'UTR 0.15 TCGA-A6-5657-01 5 74054695 74054695 C T GFM2 Missense_Mutation p.G95R 0.19 deleterious(0) probably_damaging(1) TCGA-A6-5657-01 5 74135988 74135988 C A FAM169A Missense_Mutation p.S48I 0.17 deleterious(0.02) possibly_damaging(0.586) TCGA-A6-5657-01 6 108029193 108029193 C T SCML4 Silent p.A332A 0.17 TCGA-A6-5657-01 6 27107210 27107210 C T HIST1H4I Silent p.R41R 0.10 TCGA-A6-5657-01 6 29431209 29431209 G A OR2H1 3'UTR 0.20 TCGA-A6-5657-01 6 30657971 30657971 G C NRM Silent p.A61A 0.15 TCGA-A6-5657-01 6 39843184 39843184 G A DAAM2 Missense_Mutation p.R414Q 0.21 tolerated(0.15) benign(0.004) TCGA-A6-5657-01 6 43276071 43276071 G A CRIP3 Silent p.S40S 0.14 TCGA-A6-5657-01 6 90604736 90604736 G T GJA10 Missense_Mutation p.M183I 0.20 tolerated(0.27) benign(0.044) TCGA-A6-5657-01 7 100253176 100253176 C T ACTL6B Missense_Mutation p.A46T 0.18 tolerated(0.52) benign(0.108) TCGA-A6-5657-01 7 128450321 128450321 C T CCDC136 Silent p.H643H 0.16 TCGA-A6-5657-01 7 128547205 128547205 G A AC025594.1 3'Flank 0.11 TCGA-A6-5657-01 7 136936088 136936088 C A PTN Missense_Mutation p.A114S 0.13 tolerated(0.06) possibly_damaging(0.498) TCGA-A6-5657-01 7 142563795 142563795 C A EPHB6 Missense_Mutation p.L395M 0.15 tolerated(0.07) possibly_damaging(0.896) TCGA-A6-5657-01 7 150773835 150773835 G A FASTK Missense_Mutation p.R543C 0.36 tolerated_low_confidence(0.25) benign(0.004) TCGA-A6-5657-01 7 151684337 151684337 C A GALNTL5 Missense_Mutation p.A210E 0.13 deleterious(0) possibly_damaging(0.826) TCGA-A6-5657-01 7 21941625 21941625 T C CDCA7L 3'UTR 0.14 TCGA-A6-5657-01 7 24888714 24888714 C T OSBPL3 Missense_Mutation p.A414T 0.12 tolerated(0.59) benign(0.002) TCGA-A6-5657-01 7 47851645 47851645 C A PKD1L1 Nonsense_Mutation p.E2451* 0.09 TCGA-A6-5657-01 7 5167354 5167354 G A ZNF890P RNA 0.53 TCGA-A6-5657-01 7 75189085 75189085 C A HIP1 Missense_Mutation p.R442S 0.24 tolerated(0.34) benign(0.02) TCGA-A6-5657-01 7 81350160 81350160 C A HGF Missense_Mutation p.C391F 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-5657-01 7 86824474 86824474 G T DMTF1 3'UTR 0.12 TCGA-A6-5657-01 8 100654235 100654235 A G VPS13B Missense_Mutation p.N1831S 0.37 tolerated(0.22) possibly_damaging(0.899) TCGA-A6-5657-01 8 32463090 32463090 C A NRG1 Missense_Mutation p.L97I 0.11 tolerated(0.09) probably_damaging(0.981) TCGA-A6-5657-01 8 33361301 33361301 C A TTI2 Missense_Mutation p.R360S 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-A6-5657-01 8 85441773 85441773 G T RALYL Missense_Mutation p.A86S 0.37 tolerated(0.12) benign(0.242) TCGA-A6-5657-01 9 101052847 101052847 G A GABBR2 3'UTR 0.21 TCGA-A6-5657-01 9 112629818 112629818 T C PALM2-AKAP2 Silent p.L31L 0.10 TCGA-A6-5657-01 9 113637855 113637855 C T LPAR1 Missense_Mutation p.R314H 0.08 deleterious(0.01) benign(0.386) TCGA-A6-5657-01 9 117120255 117120255 G A AKNA Silent p.I895I 0.20 TCGA-A6-5657-01 9 135205302 135205302 C T SETX Silent p.K561K 0.18 TCGA-A6-5657-01 9 16436132 16436132 G T BNC2 Missense_Mutation p.S687Y 0.15 tolerated(0.15) possibly_damaging(0.598) TCGA-A6-5657-01 9 23692261 23692261 C A ELAVL2 3'UTR 0.50 TCGA-A6-5657-01 X 106803608 106803608 C T FRMPD3 Missense_Mutation p.S328L 0.56 deleterious(0) possibly_damaging(0.831) TCGA-A6-5657-01 X 107975971 107975971 G T IRS4 Missense_Mutation p.Q1202K 0.17 tolerated_low_confidence(0.34) unknown(0) TCGA-A6-5657-01 X 111699819 111699819 G T ZCCHC16 3'UTR 0.51 TCGA-A6-5657-01 X 140336551 140336551 C T SPANXC Missense_Mutation p.V14I 0.42 deleterious(0.05) benign(0.071) TCGA-A6-5657-01 X 152482144 152482144 T C MAGEA1 Silent p.R289R 0.07 TCGA-A6-5657-01 X 24006267 24006267 G A KLHL15 Missense_Mutation p.P529L 0.08 tolerated(1) probably_damaging(0.909) TCGA-A6-5657-01 X 57146774 57146774 C T SPIN2B Missense_Mutation p.E97K 0.20 deleterious(0.02) possibly_damaging(0.738) TCGA-A6-5657-01 X 78618570 78618570 C A ITM2A Nonsense_Mutation p.G104* 0.47 TCGA-A6-5657-01 X 91133967 91133967 G T PCDH11X Missense_Mutation p.D910Y 0.44 deleterious(0) possibly_damaging(0.853) TCGA-A6-5657-01 X 96139490 96139490 G A RPA4 Missense_Mutation p.D61N 0.45 tolerated(0.07) probably_damaging(0.991) TCGA-A6-5659-01 10 101157374 101157374 C T GOT1 Missense_Mutation p.S391N 0.43 deleterious(0) benign(0.138) TCGA-A6-5659-01 10 101964332 101964332 A C CHUK Missense_Mutation p.L480V 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-A6-5659-01 10 108521404 108521404 C A SORCS1 Nonsense_Mutation p.E301* 0.28 TCGA-A6-5659-01 10 117823854 117823854 C A GFRA1 3'UTR 0.35 TCGA-A6-5659-01 10 125521473 125521473 G A CPXM2 Silent p.D564D 0.52 TCGA-A6-5659-01 10 16961990 16961990 C A CUBN Missense_Mutation p.D2265Y 0.44 deleterious(0) probably_damaging(0.988) TCGA-A6-5659-01 10 17632106 17632106 C T PTPLA 3'UTR 0.67 TCGA-A6-5659-01 10 50085200 50085200 C T WDFY4 Missense_Mutation p.R2375W 0.24 deleterious(0.04) possibly_damaging(0.696) TCGA-A6-5659-01 10 5416147 5416147 C T UCN3 Missense_Mutation p.A155V 0.41 deleterious(0) probably_damaging(0.923) TCGA-A6-5659-01 10 59956167 59956168 CT - IPMK Frame_Shift_Del p.E307Vfs*31 0.28 TCGA-A6-5659-01 10 7618483 7618483 G A ITIH5 Silent p.H637H 0.58 TCGA-A6-5659-01 10 8093044 8093044 A G GATA3 5'Flank 0.45 TCGA-A6-5659-01 10 95445048 95445048 C T FRA10AC1 Missense_Mutation p.G194S 0.42 tolerated(0.09) benign(0.304) TCGA-A6-5659-01 11 103041675 103041675 G A DYNC2H1 Missense_Mutation p.G1738S 0.04 probably_damaging(1) TCGA-A6-5659-01 11 105842716 105842716 C T GRIA4 Silent p.Y790Y 0.25 TCGA-A6-5659-01 11 107299886 107299886 C G CWF19L2 Missense_Mutation p.E358Q 0.37 tolerated(0.11) benign(0.017) TCGA-A6-5659-01 11 117100278 117100278 G C PCSK7 Missense_Mutation p.H95D 0.18 tolerated(0.09) possibly_damaging(0.791) TCGA-A6-5659-01 11 121028710 121028710 C A TECTA Missense_Mutation p.A1489E 0.58 tolerated(0.07) probably_damaging(0.98) TCGA-A6-5659-01 11 1265018 1265018 C T MUC5B Missense_Mutation p.S2303L 0.38 unknown(0) TCGA-A6-5659-01 11 27015877 27015877 C T FIBIN 5'UTR 0.50 TCGA-A6-5659-01 11 3249136 3249136 G A MRGPRE Silent p.A297A 0.48 TCGA-A6-5659-01 11 34154602 34154602 C T NAT10 Silent p.S549S 0.57 TCGA-A6-5659-01 11 46726815 46726815 G A ZNF408 Missense_Mutation p.R522H 0.48 deleterious(0) probably_damaging(0.999) TCGA-A6-5659-01 11 48153093 48153093 C A PTPRJ Intron 0.43 TCGA-A6-5659-01 11 55587811 55587811 C T OR5D18 Missense_Mutation p.R236C 0.46 tolerated(0.1) benign(0.009) TCGA-A6-5659-01 11 55659006 55659006 C A TRIM51 Silent p.T419T 0.58 TCGA-A6-5659-01 11 558054 558054 C T C11orf35 Intron 0.41 TCGA-A6-5659-01 11 5862648 5862648 T A OR52E6 Silent p.P160P 0.25 TCGA-A6-5659-01 11 60901634 60901634 G A VPS37C Missense_Mutation p.R47W 0.43 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 11 64031214 64031214 C T PLCB3 Missense_Mutation p.P836L 0.38 deleterious(0) probably_damaging(0.996) TCGA-A6-5659-01 11 64457887 64457887 C A NRXN2 Missense_Mutation p.Q280H 0.38 tolerated(0.18) probably_damaging(0.93) TCGA-A6-5659-01 11 6477580 6477580 G T TRIM3 Missense_Mutation p.T459K 0.32 tolerated(0.05) benign(0.219) TCGA-A6-5659-01 11 84245725 84245725 C T DLG2 Missense_Mutation p.R136Q 0.47 tolerated(0.74) probably_damaging(0.964) TCGA-A6-5659-01 11 92086462 92086462 T A FAT3 Missense_Mutation p.V395D 0.05 probably_damaging(0.993) TCGA-A6-5659-01 11 92532843 92532843 A T FAT3 Missense_Mutation p.I2222F 0.50 probably_damaging(0.968) TCGA-A6-5659-01 11 92533567 92533567 C T FAT3 Missense_Mutation p.P2463L 0.49 benign(0.014) TCGA-A6-5659-01 11 94532788 94532788 C T AMOTL1 Silent p.L144L 0.41 TCGA-A6-5659-01 12 124499583 124499583 C T ZNF664 3'UTR 0.41 TCGA-A6-5659-01 12 126137027 126137027 C T TMEM132B Missense_Mutation p.T647M 0.44 deleterious(0) probably_damaging(0.998) TCGA-A6-5659-01 12 15035903 15035903 G A MGP Intron 0.28 TCGA-A6-5659-01 12 19427825 19427825 C T PLEKHA5 Silent p.A407A 0.24 TCGA-A6-5659-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.46 deleterious(0) possibly_damaging(0.479) TCGA-A6-5659-01 12 5021052 5021052 G A KCNA1 Missense_Mutation p.A170T 0.53 deleterious(0.02) probably_damaging(0.997) TCGA-A6-5659-01 12 55641443 55641443 C A OR6C74 Silent p.I124I 0.39 TCGA-A6-5659-01 12 6309593 6309593 G A CD9 5'UTR 0.26 TCGA-A6-5659-01 12 70929804 70929804 C G PTPRB Splice_Site p.X2027_splice 0.22 TCGA-A6-5659-01 12 80730770 80730770 C T OTOGL Missense_Mutation p.R1607W 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 12 81688687 81688687 C T PPFIA2 Missense_Mutation p.R951H 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-A6-5659-01 12 85521659 85521659 A G LRRIQ1 Missense_Mutation p.R1353G 0.07 deleterious(0.03) benign(0.075) TCGA-A6-5659-01 13 30002818 30002818 G T MTUS2 Intron 0.48 TCGA-A6-5659-01 13 58206842 58206842 C T PCDH17 Silent p.G54G 0.31 TCGA-A6-5659-01 13 58207678 58207678 C A PCDH17 Missense_Mutation p.A333D 0.46 deleterious(0) possibly_damaging(0.857) TCGA-A6-5659-01 14 103399914 103399914 G A CDC42BPB 3'UTR 0.46 TCGA-A6-5659-01 14 106209205 106209205 C T IGHG1 Silent p.V68V 0.48 TCGA-A6-5659-01 14 21560088 21560088 C T ZNF219 Silent p.P456P 0.44 TCGA-A6-5659-01 14 23834377 23834377 G T EFS 5'UTR 0.07 TCGA-A6-5659-01 14 35871009 35871009 T G NFKBIA 3'UTR 0.47 TCGA-A6-5659-01 14 38680495 38680495 G A SSTR1 3'UTR 0.37 TCGA-A6-5659-01 14 63269180 63269180 C T KCNH5 Silent p.A563A 0.46 TCGA-A6-5659-01 14 71134432 71134432 C A TTC9 Nonsense_Mutation p.Y186* 0.42 TCGA-A6-5659-01 14 74206757 74206757 G A ELMSAN1 5'UTR 0.28 TCGA-A6-5659-01 15 31218005 31218005 G A FAN1 Missense_Mutation p.G784D 0.07 deleterious(0) probably_damaging(0.995) TCGA-A6-5659-01 15 54793046 54793046 C A UNC13C Missense_Mutation p.S1724Y 0.60 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-A6-5659-01 15 55652647 55652647 G A CCPG1 Nonsense_Mutation p.Q442* 0.08 TCGA-A6-5659-01 15 59500923 59500923 T C MYO1E Missense_Mutation p.N496S 0.14 tolerated(0.33) benign(0.136) TCGA-A6-5659-01 15 75047183 75047183 C T CYP1A2 Silent p.A435A 0.60 TCGA-A6-5659-01 15 78893858 78893858 C T CHRNA3 Missense_Mutation p.E376K 0.52 tolerated(0.56) possibly_damaging(0.713) TCGA-A6-5659-01 15 81440994 81440994 C A C15orf26 3'UTR 0.33 TCGA-A6-5659-01 16 15814062 15814062 G A MYH11 Silent p.A1640A 0.24 TCGA-A6-5659-01 16 28634574 28634574 T A SULT1A1 5'UTR 0.26 TCGA-A6-5659-01 16 29918101 29918101 C T KCTD13 3'UTR 0.10 TCGA-A6-5659-01 16 30435599 30435599 C A DCTPP1 Silent p.G156G 0.53 TCGA-A6-5659-01 16 4638184 4638184 C T C16orf96 Missense_Mutation p.A815V 0.34 deleterious(0.03) unknown(0) TCGA-A6-5659-01 16 56904133 56904133 C T SLC12A3 Missense_Mutation p.R243W 0.58 deleterious(0.05) possibly_damaging(0.814) TCGA-A6-5659-01 16 67264579 67264579 C T FHOD1 Missense_Mutation p.R928H 0.31 deleterious(0) probably_damaging(0.987) TCGA-A6-5659-01 16 67969883 67969883 C T PSMB10 Silent p.L122L 0.51 TCGA-A6-5659-01 16 68265577 68265577 G A ESRP2 Silent p.S440S 0.25 TCGA-A6-5659-01 16 70954717 70954717 G A HYDIN Missense_Mutation p.T2521M 0.27 benign(0.001) TCGA-A6-5659-01 16 737323 737323 G A WDR24 Silent p.I251I 0.56 TCGA-A6-5659-01 16 79632801 79632803 CTC - MAF In_Frame_Del p.E333del 0.32 TCGA-A6-5659-01 16 79634312 79634312 C A MAF 5'UTR 0.61 TCGA-A6-5659-01 16 846077 846077 C T CHTF18 Missense_Mutation p.P819L 0.30 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 16 89858465 89858465 C A FANCA Missense_Mutation p.M365I 0.33 tolerated(0.48) benign(0.019) TCGA-A6-5659-01 17 14248719 14248719 G A HS3ST3B1 Missense_Mutation p.R310H 0.74 deleterious(0.02) benign(0.094) TCGA-A6-5659-01 17 36493077 36493077 G A GPR179 Silent p.F337F 0.34 TCGA-A6-5659-01 17 37649047 37649047 G A CDK12 Missense_Mutation p.D718N 0.45 probably_damaging(0.973) TCGA-A6-5659-01 17 38792252 38792252 G A SMARCE1 Nonsense_Mutation p.R158* 0.32 TCGA-A6-5659-01 17 39118751 39118751 G T KRT39 Missense_Mutation p.S258Y 0.49 deleterious(0) probably_damaging(0.988) TCGA-A6-5659-01 17 39296555 39296555 C T KRTAP4-6 Missense_Mutation p.R62H 0.49 tolerated(0.13) unknown(0) TCGA-A6-5659-01 17 41585012 41585012 G A DHX8 Missense_Mutation p.E689K 0.37 deleterious(0) probably_damaging(0.999) TCGA-A6-5659-01 17 43246395 43246395 C T HEXIM2 Missense_Mutation p.P27L 0.28 tolerated_low_confidence(0.19) benign(0.022) TCGA-A6-5659-01 17 54672847 54672847 A G NOG 3'UTR 0.32 TCGA-A6-5659-01 17 56389836 56389836 C T BZRAP1 Silent p.P782P 0.48 TCGA-A6-5659-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.72 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 17 76870157 76870157 C T TIMP2 Intron 0.50 TCGA-A6-5659-01 17 76993275 76993275 C T CANT1 Missense_Mutation p.A144T 0.41 tolerated(0.54) benign(0) TCGA-A6-5659-01 17 79078476 79078476 G A BAIAP2 Missense_Mutation p.R410H 0.42 deleterious(0) probably_damaging(0.997) TCGA-A6-5659-01 18 43469806 43469806 G A EPG5 Missense_Mutation p.L1637F 0.69 deleterious(0.04) probably_damaging(0.986) TCGA-A6-5659-01 18 60027211 60027211 T C TNFRSF11A Missense_Mutation p.V182A 0.82 deleterious(0.03) benign(0.05) TCGA-A6-5659-01 19 15839233 15839233 G T OR10H2 Missense_Mutation p.C127F 0.49 deleterious(0) probably_damaging(0.999) TCGA-A6-5659-01 19 17007058 17007058 G A CPAMD8 Silent p.D1832D 0.33 TCGA-A6-5659-01 19 21607393 21607393 C T ZNF493 Silent p.L644L 0.32 TCGA-A6-5659-01 19 22362789 22362789 C A ZNF676 Missense_Mutation p.S577I 0.35 tolerated(0.09) benign(0.001) TCGA-A6-5659-01 19 35836502 35836502 C A CD22 Intron 0.46 TCGA-A6-5659-01 19 35843226 35843226 C T FFAR1 Missense_Mutation p.R258W 0.59 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 19 38189899 38189899 C A ZNF607 Missense_Mutation p.G378V 0.29 deleterious(0.04) benign(0.017) TCGA-A6-5659-01 19 38964340 38964340 G A RYR1 Silent p.A1363A 0.38 TCGA-A6-5659-01 19 42814474 42814474 G T PRR19 Missense_Mutation p.S218I 0.45 tolerated(0.17) benign(0.006) TCGA-A6-5659-01 19 47544341 47544341 G A NPAS1 Missense_Mutation p.S392N 0.53 tolerated(0.54) benign(0.047) TCGA-A6-5659-01 19 48522989 48522989 T C ELSPBP1 Silent p.N123N 0.05 TCGA-A6-5659-01 19 52196131 52196131 G A SPACA6P-AS RNA 0.29 TCGA-A6-5659-01 19 58117659 58117659 C T ZNF530 Nonsense_Mutation p.R256* 0.38 TCGA-A6-5659-01 19 7083896 7083896 G T ZNF557 3'UTR 0.57 TCGA-A6-5659-01 19 8455419 8455419 C A RAB11B Intron 0.49 TCGA-A6-5659-01 1 13839885 13839885 G T LRRC38 Silent p.I68I 0.34 TCGA-A6-5659-01 1 152059312 152059312 C A TCHHL1 Missense_Mutation p.K282N 0.55 tolerated(0.06) benign(0.349) TCGA-A6-5659-01 1 152659500 152659500 G A LCE2B Missense_Mutation p.G61R 0.32 tolerated_low_confidence(0.07) unknown(0) TCGA-A6-5659-01 1 152882574 152882574 G T IVL Missense_Mutation p.A101S 0.20 deleterious_low_confidence(0.03) unknown(0) TCGA-A6-5659-01 1 153945312 153945312 G A CREB3L4 Silent p.K212K 0.54 TCGA-A6-5659-01 1 154072550 154072550 A G NUP210L Missense_Mutation p.L630P 0.28 tolerated(0.09) probably_damaging(0.954) TCGA-A6-5659-01 1 155239394 155239394 T C CLK2 Missense_Mutation p.Y95C 0.24 tolerated(0.11) probably_damaging(0.935) TCGA-A6-5659-01 1 158533097 158533097 G T OR6P1 Missense_Mutation p.Q100K 0.52 deleterious(0.01) probably_damaging(0.949) TCGA-A6-5659-01 1 159277794 159277794 C A FCER1A 3'UTR 0.27 TCGA-A6-5659-01 1 159505418 159505418 C T OR10J5 Missense_Mutation p.C127Y 0.55 deleterious(0) probably_damaging(0.999) TCGA-A6-5659-01 1 17690409 17690409 C T PADI4 3'UTR 0.43 TCGA-A6-5659-01 1 186337109 186337109 T C TPR Silent p.Q112Q 0.15 TCGA-A6-5659-01 1 1956447 1956447 C T GABRD Silent p.D45D 0.50 TCGA-A6-5659-01 1 1959730 1959730 C T GABRD Silent p.S230S 0.51 TCGA-A6-5659-01 1 228467000 228467000 G A OBSCN Silent p.T2846T 0.54 TCGA-A6-5659-01 1 236148772 236148772 C T NID1 Missense_Mutation p.V988M 0.55 tolerated(0.16) benign(0.09) TCGA-A6-5659-01 1 240255467 240255467 G A FMN2 Missense_Mutation p.G20S 0.25 unknown(0) TCGA-A6-5659-01 1 2433902 2433902 C T PLCH2 Missense_Mutation p.R978C 0.56 tolerated_low_confidence(0.15) benign(0) TCGA-A6-5659-01 1 248059738 248059738 C A OR2W3 Missense_Mutation p.L284I 0.30 tolerated(0.33) benign(0.146) TCGA-A6-5659-01 1 29587140 29587140 C T PTPRU Missense_Mutation p.A290V 0.43 deleterious(0.01) possibly_damaging(0.566) TCGA-A6-5659-01 1 35223654 35223654 C T GJB5 Silent p.D241D 0.35 TCGA-A6-5659-01 1 35913789 35913789 G A KIAA0319L Missense_Mutation p.P833L 0.54 deleterious(0.02) possibly_damaging(0.775) TCGA-A6-5659-01 1 38353948 38353948 T C INPP5B Missense_Mutation p.N289S 0.38 tolerated(0.42) benign(0) TCGA-A6-5659-01 1 44118850 44118850 G A KDM4A Missense_Mutation p.A2T 0.53 tolerated(0.44) probably_damaging(0.956) TCGA-A6-5659-01 1 46496406 46496406 G A MAST2 Missense_Mutation p.R894Q 0.60 deleterious_low_confidence(0.03) benign(0.021) TCGA-A6-5659-01 1 52823501 52823501 G - CC2D1B Frame_Shift_Del p.L517Cfs*53 0.34 TCGA-A6-5659-01 1 53535823 53535823 A C PODN Missense_Mutation p.N147T 0.52 tolerated(0.59) benign(0.096) TCGA-A6-5659-01 1 6272832 6272832 T A RNF207 Intron 0.29 TCGA-A6-5659-01 1 85570238 85570238 G A WDR63 Missense_Mutation p.R504Q 0.11 tolerated(0.07) benign(0.389) TCGA-A6-5659-01 20 1285609 1285609 G T SNPH Missense_Mutation p.Q132H 0.53 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 20 31967411 31967411 G A CDK5RAP1 Silent p.T321T 0.51 TCGA-A6-5659-01 20 32295317 32295317 C A PXMP4 3'UTR 0.09 TCGA-A6-5659-01 20 39317809 39317809 C T MAFB 5'UTR 0.35 TCGA-A6-5659-01 20 39729899 39729899 G A TOP1 Missense_Mutation p.R405Q 0.09 tolerated(0.1) benign(0.419) TCGA-A6-5659-01 20 42887244 42887244 C T GDAP1L1 Missense_Mutation p.R182C 0.51 deleterious(0.02) probably_damaging(0.987) TCGA-A6-5659-01 20 44751265 44751265 C A CD40 Silent p.V91V 0.37 TCGA-A6-5659-01 20 58416516 58416516 G A PHACTR3 Missense_Mutation p.V505M 0.03 deleterious(0) probably_damaging(0.999) TCGA-A6-5659-01 20 60503377 60503377 C T CDH4 Missense_Mutation p.T634M 0.46 deleterious(0) probably_damaging(0.975) TCGA-A6-5659-01 20 9523284 9523284 C T PAK7 Silent p.A651A 0.05 TCGA-A6-5659-01 21 31874364 31874364 G T KRTAP19-5 Nonsense_Mutation p.Y15* 0.82 TCGA-A6-5659-01 21 35189722 35189722 A G ITSN1 Intron 0.74 TCGA-A6-5659-01 21 45947240 45947240 C T TSPEAR Missense_Mutation p.V362I 0.80 tolerated(0.21) benign(0.06) TCGA-A6-5659-01 22 17072893 17072893 A G CCT8L2 Missense_Mutation p.L183P 0.57 deleterious(0) probably_damaging(0.99) TCGA-A6-5659-01 22 41526008 41526008 G A EP300 Splice_Site p.X428_splice 0.60 TCGA-A6-5659-01 22 50648717 50648717 C T SELO Silent p.Y349Y 0.61 TCGA-A6-5659-01 22 50662847 50662847 G A TUBGCP6 Missense_Mutation p.R690W 0.59 deleterious(0) probably_damaging(0.993) TCGA-A6-5659-01 2 101869502 101869502 G T CNOT11 Missense_Mutation p.A26S 0.59 deleterious_low_confidence(0) unknown(0) TCGA-A6-5659-01 2 12858209 12858209 G T TRIB2 5'UTR 0.60 TCGA-A6-5659-01 2 130832650 130832650 C T POTEF Missense_Mutation p.E799K 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-A6-5659-01 2 139428690 139428690 C A NXPH2 Missense_Mutation p.K199N 0.05 deleterious(0) probably_damaging(0.988) TCGA-A6-5659-01 2 167083124 167083124 A C SCN9A Missense_Mutation p.L1440V 0.38 deleterious(0) probably_damaging(0.941) TCGA-A6-5659-01 2 173686678 173686678 G A RAPGEF4 Intron 0.30 TCGA-A6-5659-01 2 179611149 179611149 C A TTN Intron 0.40 TCGA-A6-5659-01 2 179642181 179642181 G T TTN Silent p.G1537G 0.46 TCGA-A6-5659-01 2 179702139 179702139 A G CCDC141 Silent p.P1269P 0.42 TCGA-A6-5659-01 2 1906998 1906998 G A MYT1L Missense_Mutation p.T627M 0.48 deleterious(0) probably_damaging(0.963) TCGA-A6-5659-01 2 202626321 202626321 C T ALS2 Silent p.P132P 0.38 TCGA-A6-5659-01 2 202957843 202957843 C A AC079354.1 Missense_Mutation p.P207Q 0.44 tolerated(0.13) possibly_damaging(0.654) TCGA-A6-5659-01 2 203749243 203749243 G C WDR12 Missense_Mutation p.L253V 0.08 deleterious(0) possibly_damaging(0.623) TCGA-A6-5659-01 2 207173493 207173493 C T ZDBF2 Missense_Mutation p.S1414F 0.41 deleterious(0) possibly_damaging(0.485) TCGA-A6-5659-01 2 208576585 208576585 A G CCNYL1 5'UTR 0.47 TCGA-A6-5659-01 2 210698798 210698798 G T UNC80 Missense_Mutation p.A950S 0.41 benign(0.391) TCGA-A6-5659-01 2 210699675 210699675 C T UNC80 Silent p.S994S 0.35 TCGA-A6-5659-01 2 220412566 220412566 C T TMEM198 Missense_Mutation p.R169C 0.49 deleterious(0) possibly_damaging(0.898) TCGA-A6-5659-01 2 227662995 227662995 C T IRS1 Missense_Mutation p.V154M 0.42 tolerated(0.12) benign(0.003) TCGA-A6-5659-01 2 234652344 234652344 C T UGT1A10 Intron 0.42 TCGA-A6-5659-01 2 237253220 237253220 C A IQCA1 Missense_Mutation p.V646F 0.44 deleterious(0) probably_damaging(0.979) TCGA-A6-5659-01 2 238245106 238245106 C T COL6A3 Silent p.T2879T 0.40 TCGA-A6-5659-01 2 26712103 26712103 C T OTOF Missense_Mutation p.V341M 0.46 deleterious(0.02) possibly_damaging(0.886) TCGA-A6-5659-01 2 28533145 28533145 A C BRE Intron 0.42 TCGA-A6-5659-01 2 31361007 31361007 C A GALNT14 5'UTR 0.40 TCGA-A6-5659-01 2 31590885 31590885 C A XDH Silent p.L713L 0.36 TCGA-A6-5659-01 2 39187173 39187173 C T ARHGEF33 Missense_Mutation p.P576L 0.43 tolerated(0.12) possibly_damaging(0.822) TCGA-A6-5659-01 2 48809485 48809485 C A STON1-GTF2A1L Missense_Mutation p.H571Q 0.47 tolerated(0.12) probably_damaging(0.999) TCGA-A6-5659-01 2 50724646 50724646 T A NRXN1 Missense_Mutation p.I942F 0.04 deleterious(0) probably_damaging(0.991) TCGA-A6-5659-01 2 75893075 75893075 T A GCFC2 Missense_Mutation p.K736N 0.08 tolerated(0.35) benign(0.038) TCGA-A6-5659-01 2 79312652 79312652 A G REG1B Silent p.N133N 0.37 TCGA-A6-5659-01 2 84880621 84880621 G A DNAH6 Missense_Mutation p.G1753R 0.41 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 3 122274755 122274755 C T PARP9 Nonsense_Mutation p.W123* 0.53 TCGA-A6-5659-01 3 122419153 122419153 C T PARP14 Silent p.A584A 0.37 TCGA-A6-5659-01 3 123634510 123634510 G A CCDC14 Missense_Mutation p.R619C 0.53 tolerated(0.09) benign(0) TCGA-A6-5659-01 3 123699176 123699176 G A ROPN1 Intron 0.52 TCGA-A6-5659-01 3 12962052 12962052 C T IQSEC1 Missense_Mutation p.R647Q 0.31 tolerated(0.35) possibly_damaging(0.666) TCGA-A6-5659-01 3 130329548 130329548 G C COL6A6 Missense_Mutation p.G1603A 0.53 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 3 140281060 140281060 C A CLSTN2 Missense_Mutation p.P708T 0.53 tolerated(0.06) benign(0.091) TCGA-A6-5659-01 3 142840691 142840691 C T CHST2 Missense_Mutation p.R345C 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-A6-5659-01 3 150876489 150876489 A - MED12L Frame_Shift_Del p.K248Nfs*5 0.24 TCGA-A6-5659-01 3 154886281 154886281 G T MME Missense_Mutation p.G594V 0.51 deleterious(0) probably_damaging(0.999) TCGA-A6-5659-01 3 169644597 169644597 C T SAMD7 Nonsense_Mutation p.R183* 0.33 TCGA-A6-5659-01 3 175189499 175189499 A C NAALADL2 Missense_Mutation p.S536R 0.50 deleterious(0.02) benign(0.034) TCGA-A6-5659-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.50 tolerated(0.06) probably_damaging(0.998) TCGA-A6-5659-01 3 182871491 182871491 C T LAMP3 Silent p.L246L 0.36 TCGA-A6-5659-01 3 184102411 184102411 C A CHRD Missense_Mutation p.D509E 0.40 tolerated(0.43) probably_damaging(0.999) TCGA-A6-5659-01 3 194387246 194387246 G A LSG1 Silent p.F94F 0.52 TCGA-A6-5659-01 3 3081749 3081749 G A CNTN4 Missense_Mutation p.R731Q 0.42 deleterious(0.04) benign(0.011) TCGA-A6-5659-01 3 35763216 35763216 G A ARPP21 Missense_Mutation p.R338H 0.40 deleterious(0.03) possibly_damaging(0.895) TCGA-A6-5659-01 3 38648200 38648200 C T SCN5A Missense_Mutation p.R367H 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-5659-01 3 44283538 44283538 C T TOPAZ1 5'UTR 0.53 TCGA-A6-5659-01 3 5252959 5252959 G A EDEM1 Intron 0.38 TCGA-A6-5659-01 3 52553532 52553532 C T STAB1 Silent p.T1729T 0.35 TCGA-A6-5659-01 3 54603875 54603875 C T CACNA2D3 Nonsense_Mutation p.R244* 0.38 TCGA-A6-5659-01 3 8787474 8787474 G A CAV3 Missense_Mutation p.R126H 0.35 tolerated(1) benign(0.003) TCGA-A6-5659-01 3 97852300 97852300 A C OR5H1 Silent p.G253G 0.19 TCGA-A6-5659-01 3 97852312 97852312 C A OR5H1 Missense_Mutation p.F257L 0.19 tolerated(0.1) benign(0.069) TCGA-A6-5659-01 3 97852315 97852315 T G OR5H1 Missense_Mutation p.I258M 0.14 tolerated(1) benign(0.001) TCGA-A6-5659-01 4 107956556 107956556 C T DKK2 Missense_Mutation p.G65S 0.63 tolerated(0.21) benign(0) TCGA-A6-5659-01 4 119204149 119204149 T G PRSS12 Silent p.R719R 0.21 TCGA-A6-5659-01 4 126242619 126242619 C T FAT4 Nonsense_Mutation p.R1685* 0.57 TCGA-A6-5659-01 4 15575830 15575830 C T CC2D2A Nonsense_Mutation p.R1218* 0.40 TCGA-A6-5659-01 4 156751163 156751163 C A ASIC5 Missense_Mutation p.A455S 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-5659-01 4 52938181 52938181 G A SPATA18 Missense_Mutation p.R206Q 0.26 tolerated(0.1) benign(0.001) TCGA-A6-5659-01 4 55141069 55141069 A G PDGFRA Missense_Mutation p.Y572C 0.61 deleterious(0) probably_damaging(0.977) TCGA-A6-5659-01 4 57220312 57220312 T C AASDH Missense_Mutation p.T426A 0.85 deleterious(0) probably_damaging(0.993) TCGA-A6-5659-01 4 5758066 5758066 G A EVC Missense_Mutation p.E514K 0.31 deleterious(0.02) benign(0.063) TCGA-A6-5659-01 4 6864455 6864456 - A KIAA0232 Frame_Shift_Ins p.T785Nfs*3 0.23 TCGA-A6-5659-01 4 76489735 76489735 C T C4orf26 Nonsense_Mutation p.R175* 0.27 TCGA-A6-5659-01 4 8396360 8396360 C T ACOX3 Missense_Mutation p.R389H 0.55 tolerated(0.17) benign(0.022) TCGA-A6-5659-01 4 9784955 9784955 C T DRD5 Silent p.F434F 0.07 TCGA-A6-5659-01 5 1038314 1038314 G A NKD2 Silent p.S394S 0.36 TCGA-A6-5659-01 5 112173388 112173388 G A APC Nonsense_Mutation p.W699* 0.79 TCGA-A6-5659-01 5 112478988 112478988 G A MCC Missense_Mutation p.R271C 0.79 deleterious(0) possibly_damaging(0.804) TCGA-A6-5659-01 5 140202638 140202638 G A PCDHA5 Silent p.A426A 0.74 TCGA-A6-5659-01 5 140209538 140209538 C T PCDHA6 Missense_Mutation p.P621L 0.80 tolerated_low_confidence(0.07) benign(0.119) TCGA-A6-5659-01 5 140734787 140734787 G A PCDHGA4 Missense_Mutation p.R7H 0.81 tolerated_low_confidence(0.58) benign(0.002) TCGA-A6-5659-01 5 146080657 146080657 G A PPP2R2B Missense_Mutation p.A43V 0.75 deleterious(0.01) probably_damaging(0.972) TCGA-A6-5659-01 5 176304609 176304609 C T UNC5A Missense_Mutation p.R514W 0.81 deleterious(0.03) probably_damaging(0.994) TCGA-A6-5659-01 5 1814533 1814533 C T NDUFS6 Silent p.G89G 0.58 TCGA-A6-5659-01 5 24498566 24498566 C A CDH10 Missense_Mutation p.A486S 0.23 deleterious(0.04) benign(0.005) TCGA-A6-5659-01 5 37044522 37044522 C T NIPBL Missense_Mutation p.P2061L 0.28 deleterious(0) probably_damaging(0.998) TCGA-A6-5659-01 5 54281362 54281362 C T ESM1 5'UTR 0.08 TCGA-A6-5659-01 5 6600002 6600002 G A NSUN2 3'UTR 0.79 TCGA-A6-5659-01 5 7802373 7802373 G T ADCY2 Missense_Mutation p.A891S 0.12 deleterious(0) probably_damaging(0.989) TCGA-A6-5659-01 5 80408627 80408627 G T RASGRF2 Silent p.L679L 0.78 TCGA-A6-5659-01 6 10586824 10586824 G A GCNT2 Intron 0.47 TCGA-A6-5659-01 6 109837156 109837156 A G AK9 Silent p.F1323F 0.38 TCGA-A6-5659-01 6 135263565 135263565 G A ALDH8A1 Missense_Mutation p.R142W 0.51 deleterious(0) probably_damaging(0.998) TCGA-A6-5659-01 6 160664675 160664675 C T SLC22A2 Missense_Mutation p.R403H 0.39 deleterious(0.02) benign(0.444) TCGA-A6-5659-01 6 166921693 166921693 C A RPS6KA2 Nonsense_Mutation p.E161* 0.30 TCGA-A6-5659-01 6 168271149 168271151 AAG - MLLT4 In_Frame_Del p.K129del 0.40 TCGA-A6-5659-01 6 31753067 31753067 C T VARS Missense_Mutation p.G435S 0.33 deleterious(0) probably_damaging(0.998) TCGA-A6-5659-01 6 33166241 33166241 T A RXRB Missense_Mutation p.I162F 0.44 tolerated(0.07) probably_damaging(0.945) TCGA-A6-5659-01 6 37252164 37252164 G A TBC1D22B Missense_Mutation p.R242Q 0.36 tolerated(0.31) possibly_damaging(0.66) TCGA-A6-5659-01 6 42123208 42123208 G A GUCA1A 5'UTR 0.47 TCGA-A6-5659-01 6 49519282 49519282 C A C6orf141 3'UTR 0.42 TCGA-A6-5659-01 6 50683110 50683110 C T TFAP2D Silent p.H107H 0.43 TCGA-A6-5659-01 6 53363521 53363521 C T GCLC 3'UTR 0.45 TCGA-A6-5659-01 6 74019287 74019287 G A KHDC1 Missense_Mutation p.R51C 0.05 deleterious_low_confidence(0) unknown(0) TCGA-A6-5659-01 6 74446212 74446212 C A CD109 Missense_Mutation p.S205Y 0.41 deleterious(0) probably_damaging(0.979) TCGA-A6-5659-01 6 80745081 80745081 G A TTK Missense_Mutation p.R624H 0.13 deleterious(0) possibly_damaging(0.9) TCGA-A6-5659-01 7 101943867 101943867 C T SH2B2 Silent p.A54A 0.35 TCGA-A6-5659-01 7 128531024 128531024 C T KCP RNA 0.41 TCGA-A6-5659-01 7 137531258 137531258 C T DGKI Silent p.A117A 0.22 TCGA-A6-5659-01 7 150439940 150439940 G T GIMAP5 Missense_Mutation p.C238F 0.31 tolerated(0.7) benign(0.425) TCGA-A6-5659-01 7 150714263 150714263 G A ATG9B Missense_Mutation p.L717F 0.27 deleterious(0.01) possibly_damaging(0.528) TCGA-A6-5659-01 7 151163955 151163955 T C RHEB 3'UTR 0.29 TCGA-A6-5659-01 7 1887384 1887384 G A AC110781.3 Missense_Mutation p.R210Q 0.25 benign(0.005) TCGA-A6-5659-01 7 29966100 29966100 C T SCRN1 Missense_Mutation p.E372K 0.18 deleterious(0.05) benign(0.048) TCGA-A6-5659-01 7 31682852 31682852 G A CCDC129 Missense_Mutation p.S649N 0.22 tolerated(0.24) benign(0.056) TCGA-A6-5659-01 7 33042439 33042439 C T FKBP9 Silent p.V508V 0.26 TCGA-A6-5659-01 7 44747296 44747296 C T OGDH Missense_Mutation p.P971L 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5659-01 7 4828201 4828201 G A AP5Z1 Intron 0.26 TCGA-A6-5659-01 7 4917449 4917449 C T RADIL Missense_Mutation p.G108S 0.52 tolerated(0.61) benign(0.006) TCGA-A6-5659-01 7 50455129 50455129 T A IKZF1 Intron 0.32 TCGA-A6-5659-01 7 63808841 63808841 C A ZNF736 Nonsense_Mutation p.C200* 0.25 TCGA-A6-5659-01 7 94827691 94827691 A T PPP1R9A Missense_Mutation p.Q595H 0.58 deleterious(0.02) benign(0.112) TCGA-A6-5659-01 7 94992137 94992137 C A PON3 Missense_Mutation p.D238Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-A6-5659-01 8 10755878 10755878 G A XKR6 Nonsense_Mutation p.R504* 0.74 TCGA-A6-5659-01 8 108970488 108970488 C T RSPO2 Missense_Mutation p.E146K 0.33 deleterious(0.02) possibly_damaging(0.487) TCGA-A6-5659-01 8 114449071 114449071 G A CSMD3 Missense_Mutation p.R5C 0.33 tolerated_low_confidence(0.2) benign(0) TCGA-A6-5659-01 8 128750945 128750945 C T MYC Missense_Mutation p.S161L 0.38 deleterious(0) possibly_damaging(0.888) TCGA-A6-5659-01 8 132002719 132002719 G A ADCY8 Missense_Mutation p.R344W 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-A6-5659-01 8 139601622 139601622 C T COL22A1 Silent p.G1585G 0.10 TCGA-A6-5659-01 8 145617782 145617782 G A ADCK5 Missense_Mutation p.E464K 0.05 deleterious(0.01) benign(0.361) TCGA-A6-5659-01 8 1645406 1645406 G A DLGAP2 Missense_Mutation p.D884N 0.54 tolerated(0.06) benign(0.11) TCGA-A6-5659-01 8 25701973 25701973 G T EBF2 3'UTR 0.61 TCGA-A6-5659-01 8 54791854 54791854 G A RGS20 Missense_Mutation p.A68T 0.40 deleterious_low_confidence(0.01) benign(0.198) TCGA-A6-5659-01 8 59060296 59060296 G T FAM110B 3'UTR 0.41 TCGA-A6-5659-01 8 89198759 89198759 C T MMP16 Missense_Mutation p.R117Q 0.27 deleterious(0) benign(0.013) TCGA-A6-5659-01 8 95835543 95835543 A G INTS8 5'UTR 0.80 TCGA-A6-5659-01 8 99440874 99440874 G A KCNS2 Missense_Mutation p.E223K 0.18 deleterious(0) probably_damaging(0.972) TCGA-A6-5659-01 9 100257989 100257989 C T TDRD7 Nonsense_Mutation p.R1041* 0.48 TCGA-A6-5659-01 9 118949512 118949512 C A PAPPA Missense_Mutation p.N165K 0.41 tolerated(0.84) benign(0.009) TCGA-A6-5659-01 9 13122117 13122117 C T MPDZ Missense_Mutation p.G1669E 0.08 deleterious(0) probably_damaging(0.987) TCGA-A6-5659-01 9 139393702 139393702 G A NOTCH1 Missense_Mutation p.R1982W 0.39 deleterious(0) probably_damaging(1) TCGA-A6-5659-01 9 139910594 139910594 G A ABCA2 Missense_Mutation p.S1046L 0.38 deleterious(0) probably_damaging(0.96) TCGA-A6-5659-01 9 14859270 14859270 C T FREM1 Missense_Mutation p.R181Q 0.38 tolerated(0.43) benign(0) TCGA-A6-5659-01 9 19049560 19049560 G A RRAGA 5'UTR 0.48 TCGA-A6-5659-01 9 20456708 20456708 T A MLLT3 Missense_Mutation p.K90N 0.06 deleterious(0) possibly_damaging(0.902) TCGA-A6-5659-01 9 79853285 79853285 G A VPS13A Missense_Mutation p.R628H 0.40 deleterious(0) probably_damaging(0.973) TCGA-A6-5659-01 9 96214556 96214556 A T FAM120A Missense_Mutation p.Q120L 0.42 deleterious(0.02) benign(0.242) TCGA-A6-5659-01 X 11682399 11682399 C T ARHGAP6 Missense_Mutation p.D184N 0.08 tolerated_low_confidence(0.58) benign(0) TCGA-A6-5659-01 X 13337218 13337218 G A ATXN3L Missense_Mutation p.P279L 0.11 tolerated(1) benign(0.001) TCGA-A6-5659-01 X 141291257 141291257 T G MAGEC2 Missense_Mutation p.K173Q 0.55 deleterious(0.04) benign(0.143) TCGA-A6-5659-01 X 151870655 151870655 C T MAGEA6 3'UTR 0.86 TCGA-A6-5659-01 X 151934822 151934822 G A MAGEA3 3'UTR 0.22 TCGA-A6-5659-01 X 1755348 1755348 C A ASMT Missense_Mutation p.P269T 0.13 tolerated(0.06) possibly_damaging(0.454) TCGA-A6-5659-01 X 32364122 32364122 T C DMD Missense_Mutation p.R1842G 0.05 benign(0.291) TCGA-A6-5659-01 X 34961024 34961024 C T FAM47B Missense_Mutation p.P26S 0.94 tolerated(0.05) benign(0.155) TCGA-A6-5659-01 X 36366293 36366293 A T CXorf30 Silent p.I277I 0.92 TCGA-A6-5659-01 X 73963270 73963270 C A KIAA2022 Silent p.G374G 0.92 TCGA-A6-5659-01 X 92964738 92964738 C T FAM133A Missense_Mutation p.S107F 0.93 deleterious_low_confidence(0) unknown(0) TCGA-A6-5660-01 10 101462398 101462398 C T ENTPD7 Silent p.A517A 0.16 TCGA-A6-5660-01 10 76865507 76865507 G A DUSP13 Intron 0.20 TCGA-A6-5660-01 10 84711267 84711267 G T NRG3 Missense_Mutation p.C366F 0.23 tolerated(0.08) probably_damaging(0.982) TCGA-A6-5660-01 10 99133355 99133355 A G RRP12 Missense_Mutation p.L668P 0.08 deleterious(0) probably_damaging(0.995) TCGA-A6-5660-01 11 103106426 103106426 C A DYNC2H1 Missense_Mutation p.A3198D 0.42 benign(0.002) TCGA-A6-5660-01 11 105842684 105842684 G A GRIA4 Missense_Mutation p.V780I 0.11 tolerated(0.54) benign(0.016) TCGA-A6-5660-01 11 118186221 118186221 G A CD3E Silent p.R196R 0.20 TCGA-A6-5660-01 11 17631855 17631855 C T OTOG Missense_Mutation p.P1682S 0.46 benign(0.08) TCGA-A6-5660-01 11 1887740 1887740 C T LSP1 Silent p.S12S 0.42 TCGA-A6-5660-01 11 2435370 2435370 C T TRPM5 Missense_Mutation p.R604H 0.34 tolerated(0.3) benign(0.009) TCGA-A6-5660-01 11 33050182 33050182 G A DEPDC7 Missense_Mutation p.G209E 0.48 tolerated(0.29) benign(0.04) TCGA-A6-5660-01 11 45672051 45672051 C T CHST1 Silent p.P141P 0.42 TCGA-A6-5660-01 11 55798511 55798511 T C OR5AS1 Missense_Mutation p.I206T 0.08 tolerated(0.08) possibly_damaging(0.688) TCGA-A6-5660-01 11 58275329 58275329 G A OR5B21 Missense_Mutation p.R84W 0.51 deleterious_low_confidence(0.01) benign(0) TCGA-A6-5660-01 11 68191055 68191055 C T LRP5 Silent p.C1042C 0.58 TCGA-A6-5660-01 11 74547324 74547324 T G RNF169 Nonsense_Mutation p.L559* 0.44 TCGA-A6-5660-01 11 8462242 8462242 G A STK33 Silent p.G310G 0.27 TCGA-A6-5660-01 12 110811917 110811917 C A ANAPC7 3'UTR 0.43 TCGA-A6-5660-01 12 118520028 118520028 G T VSIG10 Missense_Mutation p.L190M 0.10 tolerated(0.15) possibly_damaging(0.863) TCGA-A6-5660-01 12 119568493 119568493 C T SRRM4 Missense_Mutation p.R209W 0.33 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-A6-5660-01 12 123052825 123052825 A C KNTC1 Missense_Mutation p.E541A 0.06 deleterious(0) probably_damaging(0.956) TCGA-A6-5660-01 12 132405653 132405653 G A ULK1 Silent p.S990S 0.50 TCGA-A6-5660-01 12 133733118 133733118 G C ZNF10 Missense_Mutation p.G429A 0.06 deleterious(0) probably_damaging(0.996) TCGA-A6-5660-01 12 51857476 51857476 C A SLC4A8 Missense_Mutation p.P443T 0.32 deleterious(0.01) possibly_damaging(0.846) TCGA-A6-5660-01 12 55615565 55615565 G A OR10A7 Missense_Mutation p.G253R 0.27 deleterious(0.01) probably_damaging(1) TCGA-A6-5660-01 12 81101647 81101647 C T MYF6 Missense_Mutation p.P50L 0.17 tolerated(0.4) benign(0.146) TCGA-A6-5660-01 12 9232261 9232261 G T A2M Missense_Mutation p.S1002Y 0.10 deleterious(0.01) possibly_damaging(0.632) TCGA-A6-5660-01 12 94580226 94580226 C T PLXNC1 Silent p.C472C 0.44 TCGA-A6-5660-01 13 103701655 103701655 G A SLC10A2 Silent p.A301A 0.46 TCGA-A6-5660-01 13 111371639 111371639 A G ING1 Missense_Mutation p.K210R 0.13 tolerated(0.31) benign(0.139) TCGA-A6-5660-01 13 25744369 25744369 C T AMER2 Silent p.A463A 0.37 TCGA-A6-5660-01 13 28877334 28877334 C T FLT1 Silent p.S1329S 0.24 TCGA-A6-5660-01 13 79213082 79213082 T C RNF219 Missense_Mutation p.K142R 0.44 tolerated(0.65) benign(0.004) TCGA-A6-5660-01 13 95840746 95840746 G A ABCC4 Silent p.G438G 0.25 TCGA-A6-5660-01 14 106173498 106173498 G A IGHA1 3'UTR 0.36 TCGA-A6-5660-01 14 106963045 106963045 G A IGHV1-45 Silent p.Y79Y 0.16 TCGA-A6-5660-01 14 23863422 23863422 G A MYH6 Missense_Mutation p.T847M 0.26 tolerated(0.11) possibly_damaging(0.556) TCGA-A6-5660-01 14 70925048 70925048 G A ADAM21 Missense_Mutation p.D278N 0.30 tolerated(0.28) benign(0.021) TCGA-A6-5660-01 14 74711935 74711935 G A VSX2 Missense_Mutation p.V175I 0.33 deleterious(0) possibly_damaging(0.826) TCGA-A6-5660-01 14 95562265 95562265 C T DICER1 Silent p.S1664S 0.04 TCGA-A6-5660-01 15 22332504 22332505 - T RP11-69H14.6 RNA 0.12 TCGA-A6-5660-01 15 22332514 22332514 A G RP11-69H14.6 RNA 0.34 TCGA-A6-5660-01 15 23810982 23810982 C A MKRN3 Missense_Mutation p.A18E 0.29 tolerated(0.12) unknown(0) TCGA-A6-5660-01 15 44068726 44068726 G A ELL3 Missense_Mutation p.A50V 0.80 deleterious(0.04) possibly_damaging(0.825) TCGA-A6-5660-01 15 58834807 58834807 C T LIPC Silent p.A177A 0.08 TCGA-A6-5660-01 15 65681655 65681655 C T IGDCC4 Missense_Mutation p.G835S 0.59 tolerated(1) possibly_damaging(0.536) TCGA-A6-5660-01 15 72302777 72302777 C T MYO9A Silent p.T389T 0.71 TCGA-A6-5660-01 15 79749455 79749455 C A KIAA1024 Missense_Mutation p.D322E 0.87 tolerated(0.24) probably_damaging(0.957) TCGA-A6-5660-01 16 2436202 2436202 G C ABCA17P RNA 0.27 TCGA-A6-5660-01 16 29855977 29855977 C T MVP Missense_Mutation p.R600C 0.45 tolerated(0.19) probably_damaging(0.998) TCGA-A6-5660-01 16 49670802 49670802 G A ZNF423 Missense_Mutation p.A754V 0.25 deleterious(0.03) benign(0.277) TCGA-A6-5660-01 16 67327617 67327617 G A KCTD19 Missense_Mutation p.S683L 0.26 tolerated_low_confidence(0.37) benign(0.004) TCGA-A6-5660-01 16 70863631 70863631 C T HYDIN Missense_Mutation p.E4668K 0.25 possibly_damaging(0.81) TCGA-A6-5660-01 16 739463 739463 C T WDR24 Missense_Mutation p.V60M 0.53 tolerated(0.06) probably_damaging(0.97) TCGA-A6-5660-01 16 80654788 80654788 G A CDYL2 Silent p.D293D 0.30 TCGA-A6-5660-01 17 41020800 41020800 C A AOC4P RNA 0.36 TCGA-A6-5660-01 17 47583829 47583829 G A NGFR Missense_Mutation p.R126H 0.56 tolerated(0.13) benign(0.425) TCGA-A6-5660-01 17 58946043 58946043 C T BCAS3 Missense_Mutation p.R195W 0.29 deleterious(0) possibly_damaging(0.847) TCGA-A6-5660-01 17 61511878 61511878 G A CYB561 Missense_Mutation p.A214V 0.36 tolerated(1) benign(0) TCGA-A6-5660-01 17 7578384 7578401 GCAGCGCTCATGGTGGGG - TP53 In_Frame_Del p.P177_C182del 0.55 TCGA-A6-5660-01 17 76421598 76421598 C T DNAH17 Missense_Mutation p.G4347S 0.13 probably_damaging(0.999) TCGA-A6-5660-01 17 77758639 77758639 G A CBX2 Missense_Mutation p.S466N 0.42 deleterious(0.02) possibly_damaging(0.632) TCGA-A6-5660-01 17 80042768 80042768 C A FASN Missense_Mutation p.A1491S 0.51 tolerated(0.73) benign(0.003) TCGA-A6-5660-01 17 80395158 80395158 G C HEXDC Missense_Mutation p.R273T 0.15 tolerated(0.06) benign(0.103) TCGA-A6-5660-01 18 30275486 30275486 C T KLHL14 Missense_Mutation p.V367I 0.44 tolerated(0.39) probably_damaging(0.939) TCGA-A6-5660-01 18 30672862 30672862 C G CCDC178 Missense_Mutation p.D751H 0.36 deleterious(0.01) possibly_damaging(0.908) TCGA-A6-5660-01 18 47811444 47811444 T G CXXC1 Silent p.S280S 0.31 TCGA-A6-5660-01 18 66504553 66504553 A G CCDC102B Missense_Mutation p.R185G 0.36 tolerated(0.24) benign(0.02) TCGA-A6-5660-01 18 70534628 70534628 C T NETO1 5'UTR 0.20 TCGA-A6-5660-01 18 77464860 77464860 C G CTDP1 Missense_Mutation p.L239V 0.21 deleterious(0) probably_damaging(0.976) TCGA-A6-5660-01 19 15508591 15508591 C T AKAP8L Silent p.K411K 0.57 TCGA-A6-5660-01 19 15807768 15807768 C T CYP4F12 Missense_Mutation p.A483V 0.16 deleterious(0.01) possibly_damaging(0.7) TCGA-A6-5660-01 19 17488057 17488057 G T PLVAP Missense_Mutation p.A14E 0.55 deleterious(0.03) benign(0.431) TCGA-A6-5660-01 19 18193023 18193023 C T IL12RB1 Missense_Mutation p.R59H 0.23 tolerated(0.53) benign(0) TCGA-A6-5660-01 19 18547137 18547137 C G ISYNA1 Intron 0.35 TCGA-A6-5660-01 19 35233038 35233038 C A ZNF181 3'UTR 0.26 TCGA-A6-5660-01 19 42626683 42626683 T C POU2F2 Missense_Mutation p.D25G 0.23 deleterious(0.03) possibly_damaging(0.785) TCGA-A6-5660-01 19 5110773 5110773 C A KDM4B Silent p.P353P 0.45 TCGA-A6-5660-01 19 53303807 53303807 T C ZNF28 Missense_Mutation p.I431V 0.08 tolerated(0.16) benign(0.004) TCGA-A6-5660-01 19 53303850 53303850 A G ZNF28 Silent p.C416C 0.08 TCGA-A6-5660-01 19 53303874 53303874 C T ZNF28 Silent p.E408E 0.10 TCGA-A6-5660-01 19 57744047 57744047 C T AURKC Missense_Mutation p.T145M 0.47 deleterious(0.02) probably_damaging(0.946) TCGA-A6-5660-01 1 103345385 103345385 A C COL11A1 Missense_Mutation p.F1710V 0.09 unknown(0) TCGA-A6-5660-01 1 11839118 11839118 C A C1orf167 Missense_Mutation p.Q902K 0.39 tolerated(0.15) benign(0.002) TCGA-A6-5660-01 1 1470990 1470990 A T TMEM240 Missense_Mutation p.W118R 0.47 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-5660-01 1 158323557 158323557 C G CD1E 5'UTR 0.35 TCGA-A6-5660-01 1 161184102 161184102 C T NDUFS2 3'UTR 0.15 TCGA-A6-5660-01 1 172558463 172558463 T C SUCO Missense_Mutation p.I741T 0.57 tolerated(0.38) benign(0.131) TCGA-A6-5660-01 1 17668843 17668843 C T PADI4 Missense_Mutation p.A294V 0.39 deleterious(0) probably_damaging(0.943) TCGA-A6-5660-01 1 216462687 216462687 C G USH2A Missense_Mutation p.D636H 0.22 possibly_damaging(0.635) TCGA-A6-5660-01 1 229577267 229577267 A G NUP133 3'UTR 0.27 TCGA-A6-5660-01 1 231349675 231349675 C T TRIM67 Silent p.H746H 0.35 TCGA-A6-5660-01 1 247614785 247614785 G A OR2B11 Missense_Mutation p.T167M 0.62 deleterious(0.02) probably_damaging(0.999) TCGA-A6-5660-01 1 24782763 24782763 C T NIPAL3 Missense_Mutation p.A258V 0.32 deleterious(0.01) benign(0.081) TCGA-A6-5660-01 1 46751228 46751229 - C LRRC41 Frame_Shift_Ins p.E434Gfs*70 0.26 TCGA-A6-5660-01 1 67890576 67890576 T C SERBP1 Silent p.E230E 0.34 TCGA-A6-5660-01 1 74701824 74701824 A C FPGT-TNNI3K Missense_Mutation p.T141P 0.42 deleterious_low_confidence(0) benign(0.013) TCGA-A6-5660-01 1 99470013 99470013 G A LPPR5 Missense_Mutation p.A72V 0.31 tolerated(1) benign(0) TCGA-A6-5660-01 20 24524140 24524140 T A SYNDIG1 Missense_Mutation p.L136H 0.23 tolerated(0.08) probably_damaging(0.962) TCGA-A6-5660-01 20 30136866 30136866 G C HM13 Silent p.L163L 0.20 TCGA-A6-5660-01 20 3240165 3240165 C A C20orf194 Nonsense_Mutation p.G1006* 0.38 TCGA-A6-5660-01 20 61835071 61835071 G A YTHDF1 Missense_Mutation p.P74L 0.21 tolerated(0.14) possibly_damaging(0.669) TCGA-A6-5660-01 20 62059789 62059789 C A KCNQ2 Splice_Site p.X383_splice 0.16 TCGA-A6-5660-01 20 62200855 62200855 G A HELZ2 Missense_Mutation p.S245L 0.15 deleterious(0) possibly_damaging(0.536) TCGA-A6-5660-01 20 8689400 8689400 G A PLCB1 Splice_Site p.X417_splice 0.24 TCGA-A6-5660-01 21 18933709 18933709 C T CXADR Silent p.L250L 0.27 TCGA-A6-5660-01 21 38309198 38309198 G A HLCS Missense_Mutation p.R183W 0.13 deleterious(0) possibly_damaging(0.487) TCGA-A6-5660-01 21 42852431 42852431 G A TMPRSS2 Missense_Mutation p.R219W 0.21 deleterious(0.03) benign(0.169) TCGA-A6-5660-01 22 38062889 38062889 C T PDXP 3'UTR 0.08 TCGA-A6-5660-01 22 47507446 47507446 G A TBC1D22A Missense_Mutation p.A458T 0.55 deleterious(0) probably_damaging(0.978) TCGA-A6-5660-01 2 150325224 150325224 C T LYPD6 Missense_Mutation p.R95C 0.57 deleterious(0) probably_damaging(0.966) TCGA-A6-5660-01 2 159514977 159514977 A G PKP4 Intron 0.09 TCGA-A6-5660-01 2 160295109 160295109 G C BAZ2B Missense_Mutation p.S333C 0.33 possibly_damaging(0.7) TCGA-A6-5660-01 2 192711640 192711640 G A SDPR Silent p.D4D 0.09 TCGA-A6-5660-01 2 211512603 211512603 T A CPS1 Missense_Mutation p.I1059N 0.29 deleterious(0) probably_damaging(0.994) TCGA-A6-5660-01 2 225266015 225266015 C A FAM124B Missense_Mutation p.E157D 0.22 deleterious(0.01) possibly_damaging(0.885) TCGA-A6-5660-01 2 240969703 240969703 G A OR6B2 Silent p.I48I 0.51 TCGA-A6-5660-01 2 240984955 240984955 A G OR6B3 Missense_Mutation p.C179R 0.26 deleterious(0) probably_damaging(0.996) TCGA-A6-5660-01 2 241682385 241682385 G A KIF1A Missense_Mutation p.R1201C 0.50 deleterious(0) possibly_damaging(0.765) TCGA-A6-5660-01 2 29093134 29093134 C T TRMT61B Missense_Mutation p.A4T 0.30 tolerated_low_confidence(0.09) benign(0.008) TCGA-A6-5660-01 2 50755771 50755771 C G NRXN1 Missense_Mutation p.C829S 0.27 deleterious(0) benign(0.018) TCGA-A6-5660-01 3 127398930 127398930 G A ABTB1 Missense_Mutation p.E378K 0.33 tolerated(0.17) benign(0.059) TCGA-A6-5660-01 3 133191377 133191377 C G BFSP2 Silent p.S404S 0.26 TCGA-A6-5660-01 3 133467427 133467427 C T TF Missense_Mutation p.A72V 0.31 tolerated(0.21) benign(0.007) TCGA-A6-5660-01 3 134670657 134670657 C A EPHB1 Missense_Mutation p.R190S 0.51 deleterious(0.04) possibly_damaging(0.878) TCGA-A6-5660-01 3 160037633 160037633 C T IFT80 Missense_Mutation p.G291E 0.07 deleterious(0) probably_damaging(0.979) TCGA-A6-5660-01 3 178938932 178938932 A G PIK3CA Missense_Mutation p.D725G 0.53 deleterious(0.03) possibly_damaging(0.813) TCGA-A6-5660-01 3 180334343 180334344 - G CCDC39 Frame_Shift_Ins p.T850Yfs*2 0.19 TCGA-A6-5660-01 3 182858371 182858371 A G LAMP3 Missense_Mutation p.Y301H 0.52 deleterious(0) probably_damaging(0.998) TCGA-A6-5660-01 3 23942402 23942403 - ATG NKIRAS1 In_Frame_Ins p.S77dup 0.30 TCGA-A6-5660-01 3 38521288 38521288 C T ACVR2B Silent p.G310G 0.27 TCGA-A6-5660-01 3 71804104 71804104 G A GPR27 Missense_Mutation p.V302M 0.25 deleterious(0.03) probably_damaging(0.975) TCGA-A6-5660-01 4 141321586 141321586 C T CLGN Missense_Mutation p.E207K 0.55 deleterious(0) probably_damaging(0.999) TCGA-A6-5660-01 4 6066672 6066672 C T JAKMIP1 Missense_Mutation p.E456K 0.16 deleterious(0.04) benign(0.187) TCGA-A6-5660-01 4 73179457 73179457 C A ADAMTS3 Missense_Mutation p.G561V 0.51 deleterious(0) probably_damaging(0.993) TCGA-A6-5660-01 4 84376468 84376468 C G HELQ Intron 0.48 TCGA-A6-5660-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.77 TCGA-A6-5660-01 5 113740265 113740265 C T KCNN2 Missense_Mutation p.T238M 0.49 deleterious(0.01) probably_damaging(0.996) TCGA-A6-5660-01 5 135188257 135188257 C T SLC25A48 Silent p.F56F 0.37 TCGA-A6-5660-01 5 141305055 141305055 G A KIAA0141 Missense_Mutation p.R76H 0.08 tolerated(0.19) benign(0.003) TCGA-A6-5660-01 5 168111012 168111012 C T SLIT3 Silent p.L1215L 0.23 TCGA-A6-5660-01 6 111628749 111628749 G C REV3L Missense_Mutation p.R3023G 0.29 tolerated(0.57) benign(0.001) TCGA-A6-5660-01 6 40998215 40998215 G A UNC5CL Silent p.L416L 0.61 TCGA-A6-5660-01 6 43189011 43189011 G A CUL9 Missense_Mutation p.R2235H 0.37 tolerated(0.2) probably_damaging(0.998) TCGA-A6-5660-01 6 43227415 43227415 G A TTBK1 Silent p.A465A 0.60 TCGA-A6-5660-01 6 50803812 50803812 A G TFAP2B Missense_Mutation p.N214D 0.21 tolerated(0.08) benign(0.254) TCGA-A6-5660-01 6 87968508 87968508 T - ZNF292 Frame_Shift_Del p.L1721* 0.17 TCGA-A6-5660-01 6 90661052 90661052 C T BACH2 Missense_Mutation p.R258Q 0.22 tolerated(0.57) benign(0) TCGA-A6-5660-01 6 96662133 96662133 G T FUT9 3'UTR 0.23 TCGA-A6-5660-01 6 97063627 97063627 C T FHL5 Silent p.S278S 0.25 TCGA-A6-5660-01 7 132169537 132169537 A G PLXNA4 Intron 0.63 TCGA-A6-5660-01 7 134761148 134761149 - A AGBL3 Frame_Shift_Ins p.H639Tfs*25 0.26 TCGA-A6-5660-01 7 140126007 140126007 G A RAB19 3'UTR 0.08 TCGA-A6-5660-01 7 142572322 142572322 G A TRPV6 Silent p.L458L 0.29 TCGA-A6-5660-01 7 142573647 142573647 T C TRPV6 Missense_Mutation p.H258R 0.34 deleterious(0) possibly_damaging(0.848) TCGA-A6-5660-01 7 2771164 2771164 C T GNA12 Missense_Mutation p.R266H 0.40 tolerated(0.08) benign(0.004) TCGA-A6-5660-01 7 63982741 63982741 C T ZNF680 Missense_Mutation p.E131K 0.15 tolerated(0.05) possibly_damaging(0.524) TCGA-A6-5660-01 7 99786566 99786566 C T STAG3 Silent p.D214D 0.08 TCGA-A6-5660-01 8 113317005 113317005 G A CSMD3 Silent p.I2737I 0.75 TCGA-A6-5660-01 8 128752673 128752675 TGT - MYC In_Frame_Del p.V280del 0.25 TCGA-A6-5660-01 8 131370358 131370358 T C ASAP1 Missense_Mutation p.I31V 0.11 tolerated(1) benign(0.005) TCGA-A6-5660-01 8 139703090 139703090 C T COL22A1 Missense_Mutation p.G928S 0.12 unknown(0) TCGA-A6-5660-01 8 144240224 144240224 G A LY6H Silent p.S82S 0.81 TCGA-A6-5660-01 8 25247761 25247761 C T DOCK5 Missense_Mutation p.P1438L 0.46 deleterious(0.02) probably_damaging(1) TCGA-A6-5660-01 8 3245019 3245019 C T CSMD1 Missense_Mutation p.D927N 0.62 possibly_damaging(0.715) TCGA-A6-5660-01 8 37701859 37701859 C G BRF2 3'UTR 0.26 TCGA-A6-5660-01 8 68070703 68070703 G C CSPP1 Missense_Mutation p.E750Q 0.05 tolerated(0.21) probably_damaging(0.999) TCGA-A6-5660-01 8 85686837 85686837 A G RALYL Missense_Mutation p.K107E 0.74 deleterious(0.02) possibly_damaging(0.856) TCGA-A6-5660-01 8 92998451 92998451 G A RUNX1T1 Missense_Mutation p.R405W 0.75 deleterious(0.02) benign(0.117) TCGA-A6-5660-01 8 95502299 95502299 G A KIAA1429 Missense_Mutation p.R1718C 0.04 deleterious(0) probably_damaging(0.999) TCGA-A6-5660-01 9 119124985 119124986 CT - PAPPA Frame_Shift_Del p.L1488Qfs*6 0.57 TCGA-A6-5660-01 9 133911589 133911589 C T LAMC3 Silent p.P282P 0.84 TCGA-A6-5660-01 X 114239844 114239844 G C IL13RA2 Missense_Mutation p.F344L 0.27 tolerated(0.29) benign(0.086) TCGA-A6-5660-01 X 137715119 137715119 G A FGF13 Silent p.H220H 0.90 TCGA-A6-5660-01 X 2638461 2638461 C T CD99 Silent p.S86S 0.33 TCGA-A6-5660-01 X 40990744 40990744 G T USP9X Nonsense_Mutation p.E93* 0.85 TCGA-A6-5661-01 10 103296399 103296399 G T BTRC Silent p.G522G 0.32 TCGA-A6-5661-01 10 103570015 103570015 C T MGEA5 Missense_Mutation p.A136T 0.28 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 10 103827125 103827125 C T HPS6 Missense_Mutation p.R632W 0.48 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 10 104173695 104173695 C A PSD Missense_Mutation p.A462S 0.35 tolerated(0.12) possibly_damaging(0.595) TCGA-A6-5661-01 10 104179968 104179968 C - FBXL15 5'UTR 0.39 TCGA-A6-5661-01 10 104230569 104230569 C A TMEM180 Silent p.L133L 0.30 TCGA-A6-5661-01 10 104247984 104247984 C T ACTR1A Missense_Mutation p.V80I 0.12 tolerated(0.18) benign(0.02) TCGA-A6-5661-01 10 104860807 104860807 A G NT5C2 Silent p.Y178Y 0.35 TCGA-A6-5661-01 10 108427544 108427544 G A SORCS1 Nonsense_Mutation p.R736* 0.14 TCGA-A6-5661-01 10 112055049 112055049 C A SMNDC1 Missense_Mutation p.E172D 0.16 deleterious(0.01) possibly_damaging(0.751) TCGA-A6-5661-01 10 11370998 11370998 C T CELF2 Silent p.N516N 0.31 TCGA-A6-5661-01 10 113935448 113935448 C T GPAM Missense_Mutation p.R108H 0.21 deleterious(0.01) possibly_damaging(0.748) TCGA-A6-5661-01 10 115885786 115885786 T C C10orf118 Silent p.L824L 0.33 TCGA-A6-5661-01 10 116075436 116075436 C T AFAP1L2 Silent p.S165S 0.26 TCGA-A6-5661-01 10 117059569 117059569 G A ATRNL1 Missense_Mutation p.R814H 0.28 tolerated(0.08) probably_damaging(0.999) TCGA-A6-5661-01 10 117856200 117856200 G A GFRA1 Silent p.Y282Y 0.20 TCGA-A6-5661-01 10 11908735 11908735 C A PROSER2 Missense_Mutation p.P115H 0.21 deleterious(0) probably_damaging(0.979) TCGA-A6-5661-01 10 11990443 11990443 T A UPF2 Missense_Mutation p.E1033D 0.10 tolerated(0.62) benign(0.001) TCGA-A6-5661-01 10 121578825 121578825 G - INPP5F Intron 0.30 TCGA-A6-5661-01 10 123892129 123892129 C A TACC2 Missense_Mutation p.P1860H 0.05 benign(0.086) TCGA-A6-5661-01 10 123971062 123971062 T C TACC2 Silent p.C2374C 0.32 TCGA-A6-5661-01 10 124266250 124266250 G A HTRA1 Missense_Mutation p.R274Q 0.26 tolerated(0.05) probably_damaging(1) TCGA-A6-5661-01 10 125426482 125426482 G A GPR26 Missense_Mutation p.V187M 0.39 deleterious(0) probably_damaging(0.984) TCGA-A6-5661-01 10 125769625 125769625 G T CHST15 3'UTR 0.24 TCGA-A6-5661-01 10 127456165 127456166 - T MMP21 Frame_Shift_Ins p.S449Kfs*9 0.11 TCGA-A6-5661-01 10 128817057 128817057 G A DOCK1 Missense_Mutation p.A408T 0.38 deleterious(0.03) possibly_damaging(0.483) TCGA-A6-5661-01 10 132891494 132891495 - A TCERG1L Frame_Shift_Ins p.N565Qfs*8 0.23 TCGA-A6-5661-01 10 13330526 13330526 C T PHYH Missense_Mutation p.R171H 0.24 deleterious(0) possibly_damaging(0.87) TCGA-A6-5661-01 10 134726639 134726639 G A TTC40 Silent p.N748N 0.11 TCGA-A6-5661-01 10 135368868 135368868 C T SYCE1 Missense_Mutation p.G302D 0.28 deleterious(0.02) possibly_damaging(0.687) TCGA-A6-5661-01 10 13542011 13542011 C T BEND7 Missense_Mutation p.R20Q 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A6-5661-01 10 21186234 21186234 C T NEBL 5'UTR 0.35 TCGA-A6-5661-01 10 21805279 21805279 G A SKIDA1 Silent p.A491A 0.25 TCGA-A6-5661-01 10 25887442 25887442 C T GPR158 Missense_Mutation p.P963S 0.28 tolerated(0.49) benign(0.001) TCGA-A6-5661-01 10 26355941 26355941 C T MYO3A Nonsense_Mutation p.R331* 0.33 TCGA-A6-5661-01 10 30739433 30739433 C A MAP3K8 Missense_Mutation p.H251N 0.31 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 10 3155310 3155310 G A PFKP Splice_Site p.X385_splice 0.24 TCGA-A6-5661-01 10 38486462 38486462 C T RP11-508N22.8 RNA 0.29 TCGA-A6-5661-01 10 43671460 43671460 G A CSGALNACT2 Missense_Mutation p.R439H 0.34 deleterious(0) possibly_damaging(0.78) TCGA-A6-5661-01 10 44112090 44112090 C T ZNF485 Missense_Mutation p.T200M 0.33 tolerated(0.07) benign(0.27) TCGA-A6-5661-01 10 454928 454928 C T DIP2C Missense_Mutation p.A363T 0.32 deleterious(0) probably_damaging(0.977) TCGA-A6-5661-01 10 46111933 46111933 A G ZFAND4 Missense_Mutation p.L712S 0.29 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 10 50820017 50820017 G A SLC18A3 Missense_Mutation p.V411M 0.38 deleterious(0.01) probably_damaging(0.939) TCGA-A6-5661-01 10 50835806 50835806 C T CHAT Silent p.A362A 0.31 TCGA-A6-5661-01 10 51069666 51069666 T C PARG Missense_Mutation p.T240A 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-A6-5661-01 10 53458742 53458742 T - CSTF2T Frame_Shift_Del p.I190Ffs*11 0.23 TCGA-A6-5661-01 10 61832104 61832105 - C ANK3 Frame_Shift_Ins p.P2846Tfs*8 0.25 TCGA-A6-5661-01 10 63851841 63851841 C T ARID5B Silent p.H873H 0.07 TCGA-A6-5661-01 10 64136627 64136627 C T ZNF365 Silent p.A225A 0.34 TCGA-A6-5661-01 10 64574210 64574210 T C EGR2 Missense_Mutation p.D63G 0.11 tolerated(0.8) probably_damaging(0.956) TCGA-A6-5661-01 10 70182463 70182463 C T DNA2 Missense_Mutation p.R884H 0.33 tolerated(0.14) benign(0.005) TCGA-A6-5661-01 10 73491923 73491923 G A CDH23 Missense_Mutation p.V1304I 0.32 deleterious(0.05) probably_damaging(0.927) TCGA-A6-5661-01 10 75406948 75406948 A - SYNPO2L Frame_Shift_Del p.F821Sfs*27 0.37 TCGA-A6-5661-01 10 75554006 75554006 T C ZSWIM8 Silent p.L909L 0.29 TCGA-A6-5661-01 10 75567237 75567237 G A NDST2 Missense_Mutation p.R304C 0.37 deleterious(0) probably_damaging(0.988) TCGA-A6-5661-01 10 7618426 7618426 G A ITIH5 Silent p.G656G 0.38 TCGA-A6-5661-01 10 76868904 76868904 G T DUSP13 Silent p.T4T 0.40 TCGA-A6-5661-01 10 8007661 8007661 C T TAF3 Nonsense_Mutation p.R730* 0.33 TCGA-A6-5661-01 10 84738776 84738776 C - NRG3 Frame_Shift_Del p.P496Rfs*7 0.33 TCGA-A6-5661-01 10 85981571 85981572 - G LRIT2 3'UTR 0.41 TCGA-A6-5661-01 10 88478500 88478500 T C LDB3 Missense_Mutation p.L630S 0.30 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 10 88917821 88917821 G T FAM35A Missense_Mutation p.E514D 0.36 tolerated(0.06) benign(0.104) TCGA-A6-5661-01 10 90342924 90342924 G A RNLS Silent p.G8G 0.18 TCGA-A6-5661-01 10 90353811 90353811 A G LIPJ Missense_Mutation p.Y80C 0.32 deleterious(0.03) benign(0.112) TCGA-A6-5661-01 10 93011047 93011047 A G PCGF5 Splice_Site p.X109_splice 0.27 TCGA-A6-5661-01 10 93740260 93740260 T - BTAF1 Frame_Shift_Del p.Q569Sfs*23 0.30 TCGA-A6-5661-01 10 95069800 95069800 C T MYOF Missense_Mutation p.A2042T 0.14 deleterious(0.01) possibly_damaging(0.864) TCGA-A6-5661-01 10 95415577 95415577 G A PDE6C Missense_Mutation p.E666K 0.27 deleterious(0.02) benign(0.089) TCGA-A6-5661-01 10 95459846 95459846 G A FRA10AC1 Silent p.G6G 0.28 TCGA-A6-5661-01 10 95661386 95661386 T A SLC35G1 3'UTR 0.24 TCGA-A6-5661-01 10 96269866 96269866 G A TBC1D12 Missense_Mutation p.R540Q 0.30 deleterious(0.04) benign(0.167) TCGA-A6-5661-01 10 98002498 98002498 G A BLNK Silent p.Y52Y 0.28 TCGA-A6-5661-01 10 98133461 98133461 C T TLL2 Missense_Mutation p.G852S 0.27 deleterious(0.01) possibly_damaging(0.667) TCGA-A6-5661-01 10 98806781 98806781 C T SLIT1 Missense_Mutation p.G559E 0.08 deleterious(0.02) probably_damaging(1) TCGA-A6-5661-01 10 99079962 99079962 G A FRAT1 Missense_Mutation p.R251H 0.27 tolerated_low_confidence(0.1) benign(0.048) TCGA-A6-5661-01 10 99361621 99361621 G - HOGA1 Frame_Shift_Del p.G238Afs*42 0.40 TCGA-A6-5661-01 11 100061887 100061887 G A CNTN5 Missense_Mutation p.R537Q 0.34 tolerated(0.06) benign(0.076) TCGA-A6-5661-01 11 100226885 100226885 T A CNTN5 Silent p.S1079S 0.39 TCGA-A6-5661-01 11 103043953 103043953 C T DYNC2H1 Missense_Mutation p.A1826V 0.14 probably_damaging(0.94) TCGA-A6-5661-01 11 103044893 103044893 C T DYNC2H1 Nonsense_Mutation p.Q1890* 0.38 TCGA-A6-5661-01 11 10328078 10328078 C T ADM Missense_Mutation p.R150C 0.40 deleterious(0) probably_damaging(0.984) TCGA-A6-5661-01 11 10527352 10527352 G A AMPD3 Missense_Mutation p.R751Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 11 105850546 105850546 C T GRIA4 3'UTR 0.29 TCGA-A6-5661-01 11 105880392 105880392 T C MSANTD4 Missense_Mutation p.E303G 0.31 tolerated(0.08) probably_damaging(0.981) TCGA-A6-5661-01 11 111887484 111887484 G A DIXDC1 Missense_Mutation p.R608Q 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5661-01 11 111910097 111910097 G T DLAT Missense_Mutation p.G369W 0.25 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 11 113684607 113684607 C A USP28 Missense_Mutation p.Q581H 0.23 deleterious(0) probably_damaging(0.954) TCGA-A6-5661-01 11 114393018 114393018 C T NXPE1 Missense_Mutation p.G297D 0.36 deleterious(0.02) probably_damaging(0.981) TCGA-A6-5661-01 11 116628996 116628996 C T BUD13 Silent p.Q496Q 0.11 TCGA-A6-5661-01 11 116661444 116661444 G A APOA5 Silent p.D167D 0.19 TCGA-A6-5661-01 11 117099034 117099034 G A PCSK7 Silent p.N167N 0.32 TCGA-A6-5661-01 11 118247332 118247332 G A UBE4A Silent p.P505P 0.31 TCGA-A6-5661-01 11 118896762 118896762 C T SLC37A4 Missense_Mutation p.R300H 0.21 deleterious(0) probably_damaging(0.994) TCGA-A6-5661-01 11 119051921 119051921 T C NLRX1 Missense_Mutation p.L770P 0.29 deleterious(0.02) possibly_damaging(0.878) TCGA-A6-5661-01 11 11957978 11957978 C T USP47 Silent p.G598G 0.16 TCGA-A6-5661-01 11 119999115 119999115 C T TRIM29 Missense_Mutation p.R298H 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5661-01 11 12029948 12029948 G A DKK3 Missense_Mutation p.T61M 0.39 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 11 120811159 120811159 G A GRIK4 Missense_Mutation p.R527H 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-A6-5661-01 11 121039454 121039454 C T TECTA Missense_Mutation p.A1940V 0.33 deleterious(0.03) possibly_damaging(0.504) TCGA-A6-5661-01 11 123810475 123810475 C A OR4D5 Missense_Mutation p.S51Y 0.12 tolerated(1) benign(0.034) TCGA-A6-5661-01 11 123847442 123847442 G A OR10S1 Silent p.S319S 0.40 TCGA-A6-5661-01 11 124293837 124293837 A G OR8B4 3'UTR 0.37 TCGA-A6-5661-01 11 125659331 125659331 C T PATE3 Missense_Mutation p.R34C 0.20 deleterious(0) probably_damaging(0.942) TCGA-A6-5661-01 11 125660588 125660588 G A PATE3 3'UTR 0.43 TCGA-A6-5661-01 11 126343310 126343310 G A KIRREL3 Missense_Mutation p.A162V 0.32 deleterious(0.02) benign(0.416) TCGA-A6-5661-01 11 1265830 1265830 G A MUC5B Missense_Mutation p.V2574I 0.24 unknown(0) TCGA-A6-5661-01 11 1270460 1270460 C T MUC5B Missense_Mutation p.S4117L 0.20 unknown(0) TCGA-A6-5661-01 11 1275519 1275519 C T MUC5B Missense_Mutation p.H5139Y 0.31 unknown(0) TCGA-A6-5661-01 11 128628193 128628193 C T FLI1 Missense_Mutation p.R68W 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 11 128851757 128851757 T - ARHGAP32 Frame_Shift_Del p.N520Ifs*2 0.26 TCGA-A6-5661-01 11 1480454 1480454 C T BRSK2 Missense_Mutation p.R704W 0.29 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-A6-5661-01 11 16133369 16133369 G - SOX6 Frame_Shift_Del p.P293Lfs*3 0.33 TCGA-A6-5661-01 11 16847990 16847990 C T PLEKHA7 Silent p.Q340Q 0.42 TCGA-A6-5661-01 11 17632579 17632579 C T OTOG Missense_Mutation p.A1923V 0.11 benign(0.015) TCGA-A6-5661-01 11 17741473 17741473 G A MYOD1 Silent p.P48P 0.38 TCGA-A6-5661-01 11 18497106 18497106 G A LDHAL6A Missense_Mutation p.R171H 0.06 tolerated(0.15) benign(0.091) TCGA-A6-5661-01 11 18528460 18528460 C T TSG101 Missense_Mutation p.M164I 0.28 tolerated(0.09) benign(0) TCGA-A6-5661-01 11 18955932 18955932 G A MRGPRX1 Missense_Mutation p.R134C 0.29 deleterious(0.02) possibly_damaging(0.537) TCGA-A6-5661-01 11 2437169 2437169 C A TRPM5 Missense_Mutation p.K365N 0.12 deleterious(0.01) possibly_damaging(0.782) TCGA-A6-5661-01 11 2608867 2608867 C - KCNQ1 Frame_Shift_Del p.R401Gfs*18 0.31 TCGA-A6-5661-01 11 27414049 27414049 C T LGR4 Missense_Mutation p.D92N 0.37 tolerated(0.24) benign(0.225) TCGA-A6-5661-01 11 36594954 36594954 C T RAG1 Missense_Mutation p.R34W 0.38 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-A6-5661-01 11 36596949 36596949 C T RAG1 Missense_Mutation p.R699W 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-A6-5661-01 11 380366 380366 G A B4GALNT4 Silent p.K930K 0.28 TCGA-A6-5661-01 11 43418228 43418228 G A TTC17 Intron 0.34 TCGA-A6-5661-01 11 4470893 4470895 CTT - OR52K2 In_Frame_Del p.F109del 0.42 TCGA-A6-5661-01 11 46332692 46332692 G A CREB3L1 Silent p.A235A 0.43 TCGA-A6-5661-01 11 46393095 46393095 G T DGKZ Missense_Mutation p.G422V 0.40 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 11 46400599 46400599 C T DGKZ Missense_Mutation p.T1014M 0.44 deleterious(0.02) probably_damaging(0.996) TCGA-A6-5661-01 11 46783638 46783638 C T CKAP5 Missense_Mutation p.R1378H 0.34 deleterious(0) probably_damaging(0.994) TCGA-A6-5661-01 11 49831339 49831339 G A RP11-707M1.1 RNA 0.70 TCGA-A6-5661-01 11 5411399 5411399 C T OR51M1 Silent p.L257L 0.55 TCGA-A6-5661-01 11 55065499 55065499 G A TRIM51HP RNA 0.33 TCGA-A6-5661-01 11 55659200 55659200 A G TRIM51 3'UTR 0.36 TCGA-A6-5661-01 11 56237693 56237693 C T OR5M3 Missense_Mutation p.G94D 0.32 deleterious(0) possibly_damaging(0.764) TCGA-A6-5661-01 11 57472445 57472445 C T MED19 Silent p.P158P 0.48 TCGA-A6-5661-01 11 57564299 57564299 G A CTNND1 Missense_Mutation p.R264Q 0.09 tolerated(0.61) possibly_damaging(0.775) TCGA-A6-5661-01 11 57995509 57995509 G A OR10Q1 Missense_Mutation p.A280V 0.09 deleterious(0) probably_damaging(0.986) TCGA-A6-5661-01 11 58377414 58377414 G A ZFP91 Missense_Mutation p.R161H 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.707) TCGA-A6-5661-01 11 58962827 58962827 C - DTX4 Frame_Shift_Del p.G510Afs*35 0.35 TCGA-A6-5661-01 11 59282948 59282948 C T OR4D9 Missense_Mutation p.A188V 0.22 deleterious(0.01) benign(0.35) TCGA-A6-5661-01 11 60696362 60696362 C T TMEM132A Missense_Mutation p.R266W 0.37 deleterious(0) probably_damaging(0.931) TCGA-A6-5661-01 11 61093160 61093160 C - DDB1 Frame_Shift_Del p.A229Pfs*74 0.27 TCGA-A6-5661-01 11 61405187 61405187 A G RPLP0P2 RNA 0.25 TCGA-A6-5661-01 11 61595864 61595864 T C FADS2 Translation_Start_Site p.M1? 0.36 deleterious(0) possibly_damaging(0.889) TCGA-A6-5661-01 11 6239292 6239292 C T FAM160A2 Silent p.Q522Q 0.42 TCGA-A6-5661-01 11 62439208 62439208 G A C11orf48 5'Flank 0.40 TCGA-A6-5661-01 11 63594450 63594450 C T C11orf84 Missense_Mutation p.R329W 0.27 deleterious_low_confidence(0.01) probably_damaging(0.909) TCGA-A6-5661-01 11 63742125 63742126 - G AP000721.4 5'UTR 0.11 TCGA-A6-5661-01 11 63886076 63886079 TTTC - FLRT1 3'UTR 0.20 TCGA-A6-5661-01 11 64023262 64023262 C T PLCB3 Missense_Mutation p.R223W 0.16 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 11 64453194 64453194 G A NRXN2 Missense_Mutation p.A359V 0.35 tolerated(0.2) benign(0.062) TCGA-A6-5661-01 11 64812014 64812014 G A SAC3D1 Missense_Mutation p.G298R 0.13 deleterious(0.02) benign(0.166) TCGA-A6-5661-01 11 65089316 65089316 C T CDC42EP2 3'UTR 0.08 TCGA-A6-5661-01 11 65113260 65113260 C A DPF2 Missense_Mutation p.S254Y 0.29 deleterious(0.01) benign(0.169) TCGA-A6-5661-01 11 65124021 65124021 G A TIGD3 Missense_Mutation p.A248T 0.31 tolerated(0.61) benign(0.081) TCGA-A6-5661-01 11 65305547 65305547 C T SCYL1 Missense_Mutation p.P714L 0.44 deleterious(0.03) benign(0.048) TCGA-A6-5661-01 11 65366066 65366066 C T MAP3K11 Missense_Mutation p.R747H 0.24 deleterious_low_confidence(0.05) probably_damaging(0.964) TCGA-A6-5661-01 11 65416833 65416833 A G SIPA1 Missense_Mutation p.T803A 0.45 tolerated(1) benign(0) TCGA-A6-5661-01 11 6578329 6578329 C T DNHD1 Nonsense_Mutation p.Q2602* 0.31 TCGA-A6-5661-01 11 66472245 66472245 G A SPTBN2 Silent p.Y834Y 0.47 TCGA-A6-5661-01 11 66472670 66472670 G A SPTBN2 Missense_Mutation p.R693W 0.37 deleterious(0) possibly_damaging(0.817) TCGA-A6-5661-01 11 6651378 6651378 C T DCHS1 Silent p.P1549P 0.32 TCGA-A6-5661-01 11 66625713 66625713 C T LRFN4 Silent p.G166G 0.36 TCGA-A6-5661-01 11 66742849 66742849 C T C11orf86 Nonsense_Mutation p.R6* 0.40 TCGA-A6-5661-01 11 67172947 67172947 G A TBC1D10C Silent p.V110V 0.16 TCGA-A6-5661-01 11 67173450 67173450 C - TBC1D10C Frame_Shift_Del p.V183Wfs*107 0.52 TCGA-A6-5661-01 11 67259592 67259592 G A PITPNM1 Missense_Mutation p.A1216V 0.23 tolerated_low_confidence(0.63) benign(0.001) TCGA-A6-5661-01 11 67288588 67288588 C T CABP2 Missense_Mutation p.G96D 0.38 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 11 67379872 67379872 C T NDUFV1 Silent p.L446L 0.19 TCGA-A6-5661-01 11 68704174 68704174 G A IGHMBP2 Missense_Mutation p.M742I 0.30 tolerated(0.1) benign(0.005) TCGA-A6-5661-01 11 68840144 68840144 C T TPCN2 Silent p.L371L 0.28 TCGA-A6-5661-01 11 6942890 6942890 G A OR2D3 Missense_Mutation p.V220M 0.25 deleterious(0.01) possibly_damaging(0.805) TCGA-A6-5661-01 11 71715793 71715793 G A NUMA1 Nonsense_Mutation p.R1967* 0.35 TCGA-A6-5661-01 11 71725589 71725589 G A NUMA1 Missense_Mutation p.A987V 0.42 benign(0.12) TCGA-A6-5661-01 11 71728828 71728828 T C NUMA1 Missense_Mutation p.N342D 0.33 benign(0.003) TCGA-A6-5661-01 11 71819849 71819849 C T LRTOMT Missense_Mutation p.R252C 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-A6-5661-01 11 71948208 71948209 - C INPPL1 Frame_Shift_Ins p.P977Tfs*7 0.44 TCGA-A6-5661-01 11 73008277 73008277 C A P2RY6 Silent p.A238A 0.39 TCGA-A6-5661-01 11 73073120 73073120 G A ARHGEF17 Silent p.P1510P 0.34 TCGA-A6-5661-01 11 7324267 7324267 C T SYT9 Intron 0.37 TCGA-A6-5661-01 11 73879410 73879411 - T C2CD3 Frame_Shift_Ins p.Q102Tfs*21 0.26 TCGA-A6-5661-01 11 76830146 76830146 C T CAPN5 Missense_Mutation p.T413M 0.42 tolerated(0.22) probably_damaging(0.982) TCGA-A6-5661-01 11 76883865 76883865 C T MYO7A Silent p.R623R 0.23 TCGA-A6-5661-01 11 77702196 77702196 G A INTS4 Silent p.S68S 0.35 TCGA-A6-5661-01 11 830023 830023 C T EFCAB4A Missense_Mutation p.R166C 0.38 deleterious(0) probably_damaging(0.921) TCGA-A6-5661-01 11 86520488 86520489 - A PRSS23 3'UTR 0.28 TCGA-A6-5661-01 11 89956184 89956184 C T CHORDC1 5'UTR 0.19 TCGA-A6-5661-01 11 9879876 9879876 T C SBF2 Missense_Mutation p.Q666R 0.30 tolerated(0.59) possibly_damaging(0.77) TCGA-A6-5661-01 12 101016126 101016126 G A GAS2L3 Missense_Mutation p.R241Q 0.34 deleterious(0.01) probably_damaging(0.965) TCGA-A6-5661-01 12 101988745 101988745 G A MYBPC1 5'Flank 0.30 TCGA-A6-5661-01 12 104335419 104335419 C T HSP90B1 Missense_Mutation p.R415C 0.32 deleterious(0) possibly_damaging(0.676) TCGA-A6-5661-01 12 104458402 104458402 G A HCFC2 Missense_Mutation p.A22T 0.44 deleterious(0.01) probably_damaging(0.959) TCGA-A6-5661-01 12 10464076 10464076 T C KLRD1 Silent p.C59C 0.31 TCGA-A6-5661-01 12 104851272 104851272 T G CHST11 Missense_Mutation p.L28R 0.09 deleterious(0) possibly_damaging(0.55) TCGA-A6-5661-01 12 106460744 106460744 G T NUAK1 Missense_Mutation p.L608I 0.21 deleterious(0.05) probably_damaging(0.996) TCGA-A6-5661-01 12 106461466 106461466 G A NUAK1 Missense_Mutation p.S367L 0.36 deleterious(0.02) benign(0.016) TCGA-A6-5661-01 12 108029126 108029126 C A BTBD11 Missense_Mutation p.P899H 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 12 109203508 109203508 C A SSH1 Missense_Mutation p.R166M 0.30 deleterious(0) possibly_damaging(0.88) TCGA-A6-5661-01 12 109872868 109872869 - A MYO1H Frame_Shift_Ins p.T682Nfs*10 0.21 TCGA-A6-5661-01 12 109964203 109964203 C A UBE3B Missense_Mutation p.P870H 0.26 deleterious(0.01) possibly_damaging(0.481) TCGA-A6-5661-01 12 110034304 110034304 C T MVK Silent p.S371S 0.34 TCGA-A6-5661-01 12 111342520 111342520 C A CCDC63 Missense_Mutation p.L491I 0.37 deleterious(0.01) possibly_damaging(0.848) TCGA-A6-5661-01 12 112623219 112623219 G A HECTD4 Missense_Mutation p.T3038M 0.25 benign(0.009) TCGA-A6-5661-01 12 113906050 113906050 G T LHX5 Missense_Mutation p.T186N 0.23 deleterious(0) probably_damaging(0.996) TCGA-A6-5661-01 12 117655926 117655926 C T NOS1 Missense_Mutation p.R1439Q 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-A6-5661-01 12 117669906 117669906 C T NOS1 Missense_Mutation p.R1123H 0.09 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 12 120594722 120594722 G A GCN1L1 Silent p.R1054R 0.26 TCGA-A6-5661-01 12 122252554 122252554 T C SETD1B Silent p.F811F 0.32 TCGA-A6-5661-01 12 123645924 123645925 - T MPHOSPH9 Frame_Shift_Ins p.T895Nfs*4 0.27 TCGA-A6-5661-01 12 124144071 124144071 C T GTF2H3 Silent p.D208D 0.09 TCGA-A6-5661-01 12 126135311 126135311 C T TMEM132B Missense_Mutation p.R571C 0.10 deleterious(0) probably_damaging(0.996) TCGA-A6-5661-01 12 130856060 130856060 G A PIWIL1 Missense_Mutation p.A835T 0.12 deleterious(0) probably_damaging(0.993) TCGA-A6-5661-01 12 132554131 132554131 C A EP400 Missense_Mutation p.P2989H 0.29 probably_damaging(0.996) TCGA-A6-5661-01 12 132688174 132688174 C T GALNT9 Missense_Mutation p.R14H 0.40 deleterious(0) probably_damaging(0.931) TCGA-A6-5661-01 12 133257856 133257856 G A POLE Silent p.G24G 0.42 TCGA-A6-5661-01 12 1675698 1675698 G A FBXL14 3'UTR 0.50 TCGA-A6-5661-01 12 2162629 2162629 C T CACNA1C 5'Flank 0.32 TCGA-A6-5661-01 12 21680670 21680670 G A C12orf39 Missense_Mutation p.R52H 0.21 tolerated(0.06) probably_damaging(0.982) TCGA-A6-5661-01 12 25147045 25147045 C T C12orf77 3'UTR 0.38 TCGA-A6-5661-01 12 27109518 27109518 C T FGFR1OP2 Missense_Mutation p.R60W 0.31 deleterious(0) probably_damaging(0.976) TCGA-A6-5661-01 12 30876191 30876191 A T CAPRIN2 Splice_Site p.X681_splice 0.30 TCGA-A6-5661-01 12 32135794 32135794 A G KIAA1551 Silent p.P635P 0.32 TCGA-A6-5661-01 12 40041760 40041760 A - C12orf40 Frame_Shift_Del p.K186Sfs*19 0.24 TCGA-A6-5661-01 12 40077273 40077273 C T C12orf40 Missense_Mutation p.P425S 0.14 tolerated(0.31) benign(0.132) TCGA-A6-5661-01 12 40265657 40265657 C T SLC2A13 Missense_Mutation p.G381R 0.15 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 12 40916427 40916427 T C MUC19 Intron 0.25 TCGA-A6-5661-01 12 44130312 44130312 C T PUS7L Missense_Mutation p.A533T 0.06 deleterious(0) probably_damaging(0.996) TCGA-A6-5661-01 12 44142404 44142404 G T PUS7L Missense_Mutation p.L307I 0.35 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 12 44148391 44148392 - A PUS7L Frame_Shift_Ins p.K220* 0.26 TCGA-A6-5661-01 12 44194316 44194316 C T TWF1 Silent p.L100L 0.24 TCGA-A6-5661-01 12 48741900 48741900 T G ZNF641 Splice_Site p.X6_splice 0.32 TCGA-A6-5661-01 12 49086775 49086775 T - CCNT1 3'UTR 0.35 TCGA-A6-5661-01 12 4923916 4923916 C T KCNA6 3'UTR 0.08 TCGA-A6-5661-01 12 49496672 49496672 G C LMBR1L Missense_Mutation p.R232G 0.29 tolerated(0.06) probably_damaging(0.955) TCGA-A6-5661-01 12 49919823 49919823 C T SPATS2 Missense_Mutation p.R475C 0.29 deleterious(0.01) possibly_damaging(0.808) TCGA-A6-5661-01 12 50344952 50344952 C T AQP2 Silent p.R113R 0.32 TCGA-A6-5661-01 12 51108200 51108201 - G DIP2B Frame_Shift_Ins p.V893Gfs*91 0.09 TCGA-A6-5661-01 12 51138491 51138491 G A DIP2B Missense_Mutation p.V1534I 0.20 deleterious(0.04) probably_damaging(0.982) TCGA-A6-5661-01 12 52200830 52200830 C T SCN8A Missense_Mutation p.R1854W 0.36 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 12 52774319 52774319 C T KRT84 Missense_Mutation p.A418T 0.37 tolerated(0.18) benign(0.093) TCGA-A6-5661-01 12 52842638 52842638 G A KRT6B Silent p.H397H 0.24 TCGA-A6-5661-01 12 53447571 53447571 C - TENC1 Frame_Shift_Del p.P103Qfs*5 0.34 TCGA-A6-5661-01 12 54778270 54778270 A G ZNF385A Missense_Mutation p.I30T 0.34 deleterious(0) benign(0.192) TCGA-A6-5661-01 12 56506778 56506778 C T PA2G4 3'UTR 0.33 TCGA-A6-5661-01 12 56637868 56637868 C T ANKRD52 Missense_Mutation p.G952D 0.12 tolerated(0.32) benign(0.041) TCGA-A6-5661-01 12 56737620 56737620 T G STAT2 Missense_Mutation p.E801A 0.08 tolerated_low_confidence(0.06) benign(0.122) TCGA-A6-5661-01 12 57850546 57850546 T C INHBE Missense_Mutation p.L323P 0.09 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 12 58022636 58022636 G A B4GALNT1 Missense_Mutation p.R288C 0.42 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 12 58121161 58121161 G T AGAP2 Missense_Mutation p.P1021H 0.50 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 12 58217842 58217842 G A CTDSP2 Missense_Mutation p.R179W 0.36 deleterious(0) possibly_damaging(0.843) TCGA-A6-5661-01 12 6451038 6451038 C T TNFRSF1A 5'UTR 0.28 TCGA-A6-5661-01 12 6464501 6464501 G T SCNN1A Silent p.A419A 0.31 TCGA-A6-5661-01 12 65514964 65514964 C T WIF1 Missense_Mutation p.R3Q 0.36 tolerated_low_confidence(0.28) benign(0.007) TCGA-A6-5661-01 12 6571956 6571956 G - VAMP1 3'Flank 0.17 TCGA-A6-5661-01 12 66308841 66308841 C - HMGA2 Intron 0.11 TCGA-A6-5661-01 12 70189163 70189163 A G RAB3IP Intron 0.40 TCGA-A6-5661-01 12 7069509 7069509 G A PTPN6 Silent p.S528S 0.36 TCGA-A6-5661-01 12 71286696 71286696 C T PTPRR Silent p.P40P 0.36 TCGA-A6-5661-01 12 7241450 7241450 G A C1R Missense_Mutation p.R300C 0.43 tolerated(0.06) benign(0.005) TCGA-A6-5661-01 12 7241475 7241475 C T C1R Silent p.S291S 0.26 TCGA-A6-5661-01 12 7283262 7283263 - C CLSTN3 Frame_Shift_Ins p.L8Pfs*13 0.41 TCGA-A6-5661-01 12 72969285 72969285 C T TRHDE Nonsense_Mutation p.R717* 0.20 TCGA-A6-5661-01 12 7473384 7473385 - A ACSM4 Frame_Shift_Ins p.D331Rfs*3 0.18 TCGA-A6-5661-01 12 7559258 7559258 T C CD163L1 Silent p.S319S 0.11 TCGA-A6-5661-01 12 76424465 76424465 G A PHLDA1 Missense_Mutation p.H353Y 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-A6-5661-01 12 78593174 78593174 G A NAV3 Missense_Mutation p.R2171Q 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-A6-5661-01 12 80982085 80982085 T A PTPRQ Missense_Mutation p.I1484N 0.26 tolerated(0.36) benign(0.003) TCGA-A6-5661-01 12 86373605 86373605 T - MGAT4C Frame_Shift_Del p.N300Mfs*2 0.20 TCGA-A6-5661-01 12 88487613 88487613 T C CEP290 Silent p.E1081E 0.31 TCGA-A6-5661-01 12 88910256 88910256 T - KITLG Frame_Shift_Del p.K125Nfs*31 0.10 TCGA-A6-5661-01 12 9002848 9002848 C A A2ML1 Missense_Mutation p.L738I 0.34 tolerated(1) benign(0.022) TCGA-A6-5661-01 12 977927 977927 A G WNK1 Intron 0.17 TCGA-A6-5661-01 13 114201688 114201688 G A TMCO3 Silent p.V588V 0.20 TCGA-A6-5661-01 13 115092493 115092493 A C CHAMP1 3'UTR 0.16 TCGA-A6-5661-01 13 20717052 20717052 G A GJA3 Missense_Mutation p.P126S 0.34 tolerated(0.68) benign(0.002) TCGA-A6-5661-01 13 21205247 21205247 T - IFT88 Intron 0.20 TCGA-A6-5661-01 13 25255762 25255762 G - ATP12A Frame_Shift_Del p.D26Mfs*9 0.20 TCGA-A6-5661-01 13 28009610 28009610 T G GTF3A Missense_Mutation p.L325R 0.20 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 13 28844901 28844901 C T PAN3 Missense_Mutation p.A619V 0.22 deleterious(0.02) possibly_damaging(0.853) TCGA-A6-5661-01 13 32812082 32812082 C A FRY Missense_Mutation p.P2126Q 0.53 deleterious(0.03) probably_damaging(0.917) TCGA-A6-5661-01 13 36050898 36050898 G A NBEA Intron 0.11 TCGA-A6-5661-01 13 36158124 36158124 T C NBEA Silent p.Y2375Y 0.17 TCGA-A6-5661-01 13 37014297 37014297 G A CCNA1 Missense_Mutation p.V359I 0.29 tolerated(0.28) benign(0.003) TCGA-A6-5661-01 13 37526712 37526712 G A ALG5 Silent p.Y266Y 0.32 TCGA-A6-5661-01 13 38211559 38211559 C T TRPC4 Silent p.P810P 0.51 TCGA-A6-5661-01 13 40239265 40239265 A - COG6 Frame_Shift_Del p.T136Pfs*11 0.15 TCGA-A6-5661-01 13 40325092 40325092 C A COG6 Silent p.I612I 0.19 TCGA-A6-5661-01 13 43659903 43659903 G A DNAJC15 Splice_Site p.X104_splice 0.23 TCGA-A6-5661-01 13 45768815 45768815 C T KCTD4 5'UTR 0.19 TCGA-A6-5661-01 13 46171109 46171109 G A FAM194B Missense_Mutation p.A11V 0.18 deleterious(0.03) unknown(0) TCGA-A6-5661-01 13 46533668 46533670 ACA - ZC3H13 3'Flank 0.33 TCGA-A6-5661-01 13 46549755 46549755 G A ZC3H13 Missense_Mutation p.R711C 0.21 unknown(0) TCGA-A6-5661-01 13 46549821 46549821 G A ZC3H13 Missense_Mutation p.R689W 0.17 unknown(0) TCGA-A6-5661-01 13 46549923 46549924 - A ZC3H13 Frame_Shift_Ins p.E655* 0.24 TCGA-A6-5661-01 13 48936984 48936984 G A RB1 Missense_Mutation p.R251Q 0.22 deleterious(0.05) probably_damaging(0.995) TCGA-A6-5661-01 13 48986841 48986841 A - LPAR6 5'UTR 0.15 TCGA-A6-5661-01 13 49841680 49841680 C T CDADC1 Missense_Mutation p.T162M 0.25 tolerated(0.1) benign(0.12) TCGA-A6-5661-01 13 50205380 50205380 A G ARL11 3'UTR 0.37 TCGA-A6-5661-01 13 50591599 50591600 TA - TRIM13 3'Flank 0.13 TCGA-A6-5661-01 13 51918556 51918556 C T SERPINE3 Missense_Mutation p.A142V 0.11 tolerated(0.25) benign(0.084) TCGA-A6-5661-01 13 52548998 52548998 C A ATP7B Missense_Mutation p.G120C 0.21 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 13 52832717 52832717 T C RP11-248G5.8 RNA 0.24 TCGA-A6-5661-01 13 53036583 53036583 G A CKAP2 Missense_Mutation p.G397R 0.09 tolerated(0.28) probably_damaging(0.918) TCGA-A6-5661-01 13 58208476 58208476 G A PCDH17 Missense_Mutation p.R599H 0.24 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 13 61102778 61102778 G A TDRD3 Silent p.P473P 0.25 TCGA-A6-5661-01 13 61102867 61102867 T C TDRD3 Missense_Mutation p.M503T 0.18 tolerated(0.19) benign(0.036) TCGA-A6-5661-01 13 61987743 61987743 G A PCDH20 Silent p.S163S 0.15 TCGA-A6-5661-01 13 67800121 67800122 - A PCDH9 Frame_Shift_Ins p.A818Cfs*77 0.15 TCGA-A6-5661-01 13 76374830 76374830 A T LMO7 5'UTR 0.43 TCGA-A6-5661-01 13 77641953 77641953 C T MYCBP2 Missense_Mutation p.R4035H 0.13 probably_damaging(0.977) TCGA-A6-5661-01 13 77642918 77642918 G A MYCBP2 Missense_Mutation p.R3947C 0.15 probably_damaging(0.992) TCGA-A6-5661-01 13 84455655 84455655 C A SLITRK1 5'UTR 0.21 TCGA-A6-5661-01 13 88327685 88327685 T C SLITRK5 Silent p.L14L 0.26 TCGA-A6-5661-01 13 88328520 88328520 G A SLITRK5 Missense_Mutation p.E293K 0.20 deleterious(0.05) benign(0.156) TCGA-A6-5661-01 13 88330355 88330355 G - SLITRK5 Frame_Shift_Del p.A906Qfs*20 0.11 TCGA-A6-5661-01 13 96743453 96743453 G A HS6ST3 Missense_Mutation p.E113K 0.50 tolerated(0.7) unknown(0) TCGA-A6-5661-01 14 100406435 100406436 - G EML1 Frame_Shift_Ins p.R832Afs*52 0.16 TCGA-A6-5661-01 14 100758727 100758727 C T SLC25A29 Missense_Mutation p.V269I 0.36 deleterious(0.01) probably_damaging(0.965) TCGA-A6-5661-01 14 102510335 102510335 C T DYNC1H1 Missense_Mutation p.R4213W 0.38 probably_damaging(0.978) TCGA-A6-5661-01 14 102973260 102973260 G A ANKRD9 3'UTR 0.38 TCGA-A6-5661-01 14 103336737 103336737 G A TRAF3 Missense_Mutation p.E67K 0.34 tolerated(0.05) possibly_damaging(0.579) TCGA-A6-5661-01 14 104124001 104124001 C T KLC1 Missense_Mutation p.T127M 0.35 deleterious(0.01) probably_damaging(0.98) TCGA-A6-5661-01 14 104573196 104573196 G A ASPG Missense_Mutation p.G412S 0.28 deleterious(0.01) possibly_damaging(0.863) TCGA-A6-5661-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.38 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 14 105353355 105353355 C T CEP170B Nonsense_Mutation p.R927* 0.29 TCGA-A6-5661-01 14 105411634 105411634 G A AHNAK2 Missense_Mutation p.A3385V 0.35 possibly_damaging(0.649) TCGA-A6-5661-01 14 105414181 105414181 G - AHNAK2 Frame_Shift_Del p.P2536Lfs*14 0.17 TCGA-A6-5661-01 14 106829996 106829998 AGG - IGHV4-34 In_Frame_Del p.L17del 0.20 TCGA-A6-5661-01 14 20528975 20528975 T A OR4L1 Missense_Mutation p.Y258N 0.38 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 14 20586553 20586553 A - OR4K17 Frame_Shift_Del p.K331Nfs*7 0.16 TCGA-A6-5661-01 14 21862241 21862241 G - CHD8 Frame_Shift_Del p.L1905Ffs*30 0.30 TCGA-A6-5661-01 14 21993741 21993741 C T SALL2 Missense_Mutation p.A41T 0.35 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 14 23778121 23778121 G C BCL2L2 Missense_Mutation p.A177P 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-A6-5661-01 14 24710284 24710285 AG - TINF2 Frame_Shift_Del p.S182Yfs*25 0.19 TCGA-A6-5661-01 14 24845868 24845869 - C NFATC4 Frame_Shift_Ins p.F874Lfs*13 0.39 TCGA-A6-5661-01 14 24884654 24884654 C A NYNRIN Silent p.S1233S 0.34 TCGA-A6-5661-01 14 31381316 31381316 C T STRN3 Missense_Mutation p.V483I 0.37 tolerated(1) probably_damaging(0.992) TCGA-A6-5661-01 14 33684597 33684597 G A NPAS3 Missense_Mutation p.R117Q 0.40 deleterious(0.03) benign(0.238) TCGA-A6-5661-01 14 35483073 35483073 C A SRP54 Missense_Mutation p.P284H 0.29 tolerated(0.09) possibly_damaging(0.676) TCGA-A6-5661-01 14 36302265 36302265 G A BRMS1L Silent p.P105P 0.29 TCGA-A6-5661-01 14 38679100 38679100 G A SSTR1 Missense_Mutation p.R169H 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-A6-5661-01 14 39304867 39304867 G T LINC00639 RNA 0.13 TCGA-A6-5661-01 14 39646853 39646853 T C PNN Silent p.L128L 0.09 TCGA-A6-5661-01 14 44974717 44974717 G A FSCB Missense_Mutation p.R492W 0.33 deleterious(0.03) possibly_damaging(0.722) TCGA-A6-5661-01 14 50952321 50952321 G A MAP4K5 Silent p.G99G 0.37 TCGA-A6-5661-01 14 51208426 51208426 G A NIN Silent p.T1774T 0.45 TCGA-A6-5661-01 14 51561588 51561588 G C TRIM9 Missense_Mutation p.P24A 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-A6-5661-01 14 52534588 52534588 C T NID2 Silent p.L174L 0.13 TCGA-A6-5661-01 14 52535595 52535595 C T NID2 Missense_Mutation p.G40R 0.25 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 14 54418732 54418732 C T BMP4 Missense_Mutation p.R70H 0.18 deleterious(0) probably_damaging(0.95) TCGA-A6-5661-01 14 56094709 56094709 C T KTN1 Missense_Mutation p.A348V 0.24 deleterious(0.02) benign(0.065) TCGA-A6-5661-01 14 56130676 56130676 C T KTN1 Missense_Mutation p.L1032F 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-A6-5661-01 14 57271011 57271011 C T OTX2 Silent p.A56A 0.41 TCGA-A6-5661-01 14 58831406 58831406 A - ARID4A Frame_Shift_Del p.I869* 0.24 TCGA-A6-5661-01 14 62207751 62207751 C T HIF1A Silent p.H670H 0.30 TCGA-A6-5661-01 14 63920603 63920603 T C PPP2R5E Missense_Mutation p.D53G 0.26 deleterious(0) benign(0.239) TCGA-A6-5661-01 14 64153328 64153328 A G SGPP1 Missense_Mutation p.F274S 0.25 deleterious(0) probably_damaging(0.997) TCGA-A6-5661-01 14 64522887 64522887 G A SYNE2 Missense_Mutation p.E3324K 0.32 benign(0.033) TCGA-A6-5661-01 14 64628890 64628890 G A SYNE2 Missense_Mutation p.A5399T 0.13 benign(0.142) TCGA-A6-5661-01 14 64939739 64939739 G - AKAP5 3'UTR 0.25 TCGA-A6-5661-01 14 65253788 65253790 CTC - SPTB In_Frame_Del p.E965del 0.47 TCGA-A6-5661-01 14 71444466 71444466 C - PCNX Frame_Shift_Del p.S473Lfs*77 0.29 TCGA-A6-5661-01 14 73437558 73437558 G A ZFYVE1 3'UTR 0.10 TCGA-A6-5661-01 14 73437573 73437573 C T ZFYVE1 3'UTR 0.09 TCGA-A6-5661-01 14 73572740 73572740 G A RBM25 Missense_Mutation p.R443Q 0.35 unknown(0) TCGA-A6-5661-01 14 73989444 73989444 G A HEATR4 Missense_Mutation p.T138I 0.34 deleterious(0.02) benign(0.08) TCGA-A6-5661-01 14 74976550 74976550 C T LTBP2 Missense_Mutation p.C1055Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 14 76117768 76117768 A - C14orf1 3'UTR 0.26 TCGA-A6-5661-01 14 76949060 76949060 C T ESRRB Nonsense_Mutation p.R249* 0.32 TCGA-A6-5661-01 14 78043197 78043197 C T SPTLC2 Missense_Mutation p.A182T 0.37 deleterious(0.01) possibly_damaging(0.58) TCGA-A6-5661-01 14 78353431 78353431 C T ADCK1 Intron 0.19 TCGA-A6-5661-01 14 79270136 79270136 G - NRXN3 Frame_Shift_Del p.R369Vfs*8 0.33 TCGA-A6-5661-01 14 81943343 81943343 C - SEL1L Frame_Shift_Del p.P787Hfs*16 0.43 TCGA-A6-5661-01 14 90459747 90459747 C T TDP1 Silent p.R487R 0.32 TCGA-A6-5661-01 14 90754685 90754685 G A NRDE2 Missense_Mutation p.H1012Y 0.21 deleterious(0) probably_damaging(0.979) TCGA-A6-5661-01 14 90755464 90755464 T - NRDE2 Frame_Shift_Del p.N752Tfs*5 0.28 TCGA-A6-5661-01 14 90863501 90863502 - C CALM1 5'UTR 0.29 TCGA-A6-5661-01 14 90871085 90871085 C T CALM1 3'UTR 0.30 TCGA-A6-5661-01 14 92439118 92439118 G A TRIP11 Missense_Mutation p.P1888S 0.31 tolerated(0.05) benign(0.397) TCGA-A6-5661-01 14 94929227 94929227 A G SERPINA9 3'UTR 0.41 TCGA-A6-5661-01 15 101528846 101528846 C T LRRK1 Silent p.C147C 0.39 TCGA-A6-5661-01 15 22742884 22742884 G T GOLGA6L1 Missense_Mutation p.E423D 0.12 unknown(0) TCGA-A6-5661-01 15 22835954 22835954 A - TUBGCP5 Frame_Shift_Del p.T64Qfs*15 0.33 TCGA-A6-5661-01 15 23811404 23811405 - C MKRN3 Frame_Shift_Ins p.A162Gfs*15 0.29 TCGA-A6-5661-01 15 28519459 28519459 A G HERC2 Missense_Mutation p.F260L 0.39 possibly_damaging(0.696) TCGA-A6-5661-01 15 31329941 31329941 C T TRPM1 Silent p.A865A 0.05 TCGA-A6-5661-01 15 34119480 34119480 C T RYR3 Missense_Mutation p.R3776C 0.08 probably_damaging(1) TCGA-A6-5661-01 15 35275685 35275685 C G ZNF770 5'UTR 0.34 TCGA-A6-5661-01 15 40293270 40293270 C - EIF2AK4 Frame_Shift_Del p.P1003Hfs*17 0.33 TCGA-A6-5661-01 15 41062651 41062651 C A C15orf62 5'UTR 0.23 TCGA-A6-5661-01 15 41099694 41099694 C T ZFYVE19 5'UTR 0.41 TCGA-A6-5661-01 15 41247605 41247605 G A CHAC1 Missense_Mutation p.G143E 0.42 tolerated(0.3) benign(0.124) TCGA-A6-5661-01 15 41571628 41571628 T C CHP1 3'UTR 0.32 TCGA-A6-5661-01 15 41813997 41813997 C A RPAP1 Nonsense_Mutation p.G993* 0.30 TCGA-A6-5661-01 15 42034840 42034840 C T MGA Missense_Mutation p.T1561I 0.12 tolerated(0.37) benign(0.16) TCGA-A6-5661-01 15 42052632 42052632 C T MGA Missense_Mutation p.R2435W 0.21 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 15 42439375 42439375 C T PLA2G4F Missense_Mutation p.V456M 0.46 tolerated(0.2) benign(0.15) TCGA-A6-5661-01 15 42606314 42606314 A G GANC Intron 0.17 TCGA-A6-5661-01 15 43026431 43026431 A C CDAN1 Missense_Mutation p.V417G 0.27 deleterious(0) possibly_damaging(0.773) TCGA-A6-5661-01 15 43507526 43507526 C T EPB42 Missense_Mutation p.G96E 0.21 deleterious(0) probably_damaging(0.991) TCGA-A6-5661-01 15 43531052 43531052 C T TGM5 Silent p.E436E 0.33 TCGA-A6-5661-01 15 45404910 45404910 C T DUOX2 Missense_Mutation p.R56Q 0.48 tolerated(0.13) benign(0.046) TCGA-A6-5661-01 15 45427447 45427447 G T DUOX1 Missense_Mutation p.W151C 0.34 deleterious(0) probably_damaging(0.957) TCGA-A6-5661-01 15 48495415 48495415 C T CTXN2 3'UTR 0.32 TCGA-A6-5661-01 15 51535047 51535047 C T CYP19A1 Missense_Mutation p.M21I 0.34 tolerated_low_confidence(0.78) benign(0.001) TCGA-A6-5661-01 15 52100643 52100643 C T TMOD2 Nonsense_Mutation p.R350* 0.36 TCGA-A6-5661-01 15 52338797 52338797 C T MAPK6 Missense_Mutation p.A47V 0.24 deleterious(0) possibly_damaging(0.659) TCGA-A6-5661-01 15 54919114 54919114 G A UNC13C Missense_Mutation p.G2150R 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-5661-01 15 55497611 55497611 C T RAB27A 3'UTR 0.37 TCGA-A6-5661-01 15 63637747 63637747 G T CA12 Missense_Mutation p.L120M 0.32 tolerated(0.16) probably_damaging(0.978) TCGA-A6-5661-01 15 65421455 65421455 T - PDCD7 Frame_Shift_Del p.K308Nfs*18 0.16 TCGA-A6-5661-01 15 66161924 66161924 A T RAB11A Translation_Start_Site p.M1? 0.46 deleterious_low_confidence(0.01) benign(0.196) TCGA-A6-5661-01 15 66774216 66774216 C T MAP2K1 Missense_Mutation p.S231L 0.23 deleterious(0) possibly_damaging(0.686) TCGA-A6-5661-01 15 68118556 68118556 C T SKOR1 Silent p.C316C 0.22 TCGA-A6-5661-01 15 69324072 69324072 C T NOX5 Silent p.D180D 0.37 TCGA-A6-5661-01 15 70960552 70960552 T G UACA Missense_Mutation p.K824T 0.08 tolerated(0.27) benign(0.185) TCGA-A6-5661-01 15 71128701 71128701 A - LARP6 Frame_Shift_Del p.L115Cfs*2 0.08 TCGA-A6-5661-01 15 72104466 72104466 T C NR2E3 RNA 0.16 TCGA-A6-5661-01 15 72144569 72144569 T C MYO9A Missense_Mutation p.I2127V 0.28 tolerated(0.1) probably_damaging(0.997) TCGA-A6-5661-01 15 72170505 72170505 G A MYO9A Missense_Mutation p.T1936M 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5661-01 15 72579655 72579655 C A CELF6 Missense_Mutation p.R466M 0.29 deleterious(0) possibly_damaging(0.681) TCGA-A6-5661-01 15 73994790 73994790 C T CD276 Missense_Mutation p.R92C 0.38 deleterious(0) probably_damaging(0.993) TCGA-A6-5661-01 15 74425453 74425453 C T ISLR2 Missense_Mutation p.R120C 0.32 deleterious(0.02) possibly_damaging(0.861) TCGA-A6-5661-01 15 74751222 74751222 C T UBL7 5'UTR 0.31 TCGA-A6-5661-01 15 75970135 75970135 C T CSPG4 Silent p.P1681P 0.33 TCGA-A6-5661-01 15 76467920 76467920 C T C15orf27 Silent p.L225L 0.41 TCGA-A6-5661-01 15 76995242 76995242 G - SCAPER Frame_Shift_Del p.K784Nfs*2 0.26 TCGA-A6-5661-01 15 77425646 77425646 G A PEAK1 Missense_Mutation p.P1260S 0.36 tolerated(0.6) benign(0.004) TCGA-A6-5661-01 15 77907237 77907237 G A LINGO1 Missense_Mutation p.R338C 0.35 deleterious(0) probably_damaging(0.971) TCGA-A6-5661-01 15 78882476 78882476 G A CHRNA5 Missense_Mutation p.R248H 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 15 81201517 81201517 C T KIAA1199 Missense_Mutation p.P556L 0.32 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 15 81592567 81592568 - C IL16 Frame_Shift_Ins p.L969Pfs*8 0.13 TCGA-A6-5661-01 15 85382951 85382951 C T ALPK3 Silent p.A349A 0.31 TCGA-A6-5661-01 15 86284470 86284470 G A AKAP13 Missense_Mutation p.R2605H 0.37 tolerated(0.05) benign(0.109) TCGA-A6-5661-01 15 86311483 86311501 CGCGTCCACTGGTTGGTCT - KLHL25 Frame_Shift_Del p.E514Gfs*5 0.28 TCGA-A6-5661-01 15 89695055 89695055 C T ABHD2 Silent p.F114F 0.36 TCGA-A6-5661-01 15 90794116 90794116 G A TTLL13 Missense_Mutation p.R85H 0.29 tolerated(0.14) benign(0.004) TCGA-A6-5661-01 15 90999445 90999445 G A IQGAP1 Silent p.L558L 0.31 TCGA-A6-5661-01 15 91422703 91422703 G A FURIN Silent p.T361T 0.27 TCGA-A6-5661-01 15 93595441 93595441 C T RGMA Missense_Mutation p.E151K 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-A6-5661-01 15 94899261 94899262 - T MCTP2 Intron 0.12 TCGA-A6-5661-01 15 95001410 95001410 G T MCTP2 Missense_Mutation p.Q765H 0.32 deleterious(0) probably_damaging(0.968) TCGA-A6-5661-01 16 1261272 1261272 T - CACNA1H Frame_Shift_Del p.F1444Lfs*51 0.45 TCGA-A6-5661-01 16 12662490 12662490 C T SNX29 3'UTR 0.31 TCGA-A6-5661-01 16 12996093 12996093 G A SHISA9 Missense_Mutation p.A58T 0.33 tolerated(0.65) benign(0) TCGA-A6-5661-01 16 1308348 1308348 C - TPSD1 Frame_Shift_Del p.L235Wfs*5 0.17 TCGA-A6-5661-01 16 1391468 1391468 G A BAIAP3 Missense_Mutation p.V272I 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-A6-5661-01 16 1396257 1396257 G A BAIAP3 Silent p.T831T 0.33 TCGA-A6-5661-01 16 15026498 15026498 C T NPIPA1 5'Flank 0.16 TCGA-A6-5661-01 16 1604827 1604827 C A TMEM204 Missense_Mutation p.P161T 0.09 deleterious_low_confidence(0.01) benign(0.273) TCGA-A6-5661-01 16 1817703 1817703 G A MAPK8IP3 Missense_Mutation p.V1125M 0.09 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 16 18840904 18840904 C T SMG1 Missense_Mutation p.G3103R 0.37 deleterious(0) possibly_damaging(0.832) TCGA-A6-5661-01 16 20329743 20329743 G A GP2 Silent p.N342N 0.28 TCGA-A6-5661-01 16 20998713 20998713 G A DNAH3 Missense_Mutation p.R2314C 0.10 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 16 2105443 2105443 G A TSC2 Silent p.S174S 0.27 TCGA-A6-5661-01 16 22358551 22358551 C T CDR2 Missense_Mutation p.C367Y 0.33 deleterious(0.03) possibly_damaging(0.898) TCGA-A6-5661-01 16 2284933 2284933 G A E4F1 Silent p.T622T 0.44 TCGA-A6-5661-01 16 2304001 2304001 G A AC009065.1 Nonsense_Mutation p.W88* 0.54 TCGA-A6-5661-01 16 2333221 2333221 C - ABCA3 Frame_Shift_Del p.G1334Afs*12 0.54 TCGA-A6-5661-01 16 23400207 23400207 C A COG7 3'UTR 0.27 TCGA-A6-5661-01 16 24225986 24225986 G A PRKCB Missense_Mutation p.R624Q 0.36 deleterious(0.01) benign(0.009) TCGA-A6-5661-01 16 27457329 27457329 C A IL21R Missense_Mutation p.L263I 0.29 tolerated(0.05) benign(0.439) TCGA-A6-5661-01 16 27840190 27840190 G A GSG1L Silent p.H250H 0.22 TCGA-A6-5661-01 16 2812983 2812985 TTC - SRRM2 In_Frame_Del p.S820del 0.12 TCGA-A6-5661-01 16 28518101 28518101 C T IL27 Splice_Site p.X11_splice 0.20 TCGA-A6-5661-01 16 2871392 2871392 G A PRSS21 Missense_Mutation p.C244Y 0.42 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 16 29675279 29675279 T A SPN Missense_Mutation p.L77H 0.35 tolerated(0.55) possibly_damaging(0.473) TCGA-A6-5661-01 16 29708617 29708617 G A QPRT Missense_Mutation p.C260Y 0.10 tolerated(0.05) probably_damaging(0.933) TCGA-A6-5661-01 16 30567320 30567320 G A ZNF764 Missense_Mutation p.S141L 0.35 tolerated(0.55) benign(0.003) TCGA-A6-5661-01 16 30581465 30581465 G A ZNF688 Silent p.H201H 0.37 TCGA-A6-5661-01 16 3077666 3077666 C T THOC6 3'UTR 0.38 TCGA-A6-5661-01 16 30974812 30974813 TG - SETD1A Frame_Shift_Del p.V193Afs*9 0.44 TCGA-A6-5661-01 16 31004156 31004157 - C STX1B Frame_Shift_Ins p.T285Dfs*75 0.37 TCGA-A6-5661-01 16 31153080 31153080 C A PRSS36 Nonsense_Mutation p.E575* 0.12 TCGA-A6-5661-01 16 343713 343713 G A AXIN1 Missense_Mutation p.S654L 0.29 tolerated(0.07) possibly_damaging(0.627) TCGA-A6-5661-01 16 3487477 3487477 C T ZNF597 Silent p.E74E 0.32 TCGA-A6-5661-01 16 3640332 3640332 G A SLX4 Missense_Mutation p.R1103C 0.06 tolerated(0.19) benign(0.001) TCGA-A6-5661-01 16 47695662 47695662 G T PHKB Silent p.L743L 0.28 TCGA-A6-5661-01 16 50261800 50261800 G A PAPD5 Silent p.P602P 0.41 TCGA-A6-5661-01 16 53686795 53686795 G A RPGRIP1L Nonsense_Mutation p.R602* 0.27 TCGA-A6-5661-01 16 53860211 53860211 G A FTO Missense_Mutation p.G187R 0.29 tolerated(0.52) benign(0.015) TCGA-A6-5661-01 16 54319461 54319461 G A IRX3 Missense_Mutation p.P111L 0.41 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-A6-5661-01 16 55519287 55519287 G A MMP2 Silent p.G202G 0.37 TCGA-A6-5661-01 16 55690601 55690601 G A SLC6A2 5'UTR 0.52 TCGA-A6-5661-01 16 55734150 55734150 T C SLC6A2 Missense_Mutation p.S564P 0.12 deleterious(0) probably_damaging(0.997) TCGA-A6-5661-01 16 56362673 56362673 G A GNAO1 Missense_Mutation p.R145Q 0.41 deleterious(0.02) benign(0.037) TCGA-A6-5661-01 16 56397878 56397878 C T AMFR Missense_Mutation p.R580H 0.21 tolerated(0.13) benign(0.042) TCGA-A6-5661-01 16 57719775 57719775 G A GPR97 Missense_Mutation p.A493T 0.30 tolerated(0.06) probably_damaging(0.92) TCGA-A6-5661-01 16 58018605 58018605 G A TEPP Silent p.A172A 0.31 TCGA-A6-5661-01 16 58571060 58571060 C A CNOT1 Missense_Mutation p.G1827C 0.14 deleterious(0) possibly_damaging(0.572) TCGA-A6-5661-01 16 633239 633239 G A PIGQ Missense_Mutation p.A630T 0.35 deleterious_low_confidence(0) benign(0) TCGA-A6-5661-01 16 65005482 65005482 C A CDH11 Missense_Mutation p.D548Y 0.22 deleterious(0) possibly_damaging(0.87) TCGA-A6-5661-01 16 66600112 66600112 G - CKLF 3'Flank 0.39 TCGA-A6-5661-01 16 67183468 67183468 C T B3GNT9 Silent p.A307A 0.26 TCGA-A6-5661-01 16 67232078 67232078 G T E2F4 3'UTR 0.32 TCGA-A6-5661-01 16 67286593 67286593 G A SLC9A5 Silent p.L112L 0.31 TCGA-A6-5661-01 16 67963905 67963905 C T CTRL Missense_Mutation p.A243T 0.16 tolerated(1) benign(0.017) TCGA-A6-5661-01 16 68395566 68395566 G A SMPD3 Silent p.N602N 0.37 TCGA-A6-5661-01 16 68845620 68845620 C T CDH1 Missense_Mutation p.A289V 0.13 deleterious(0.01) benign(0.162) TCGA-A6-5661-01 16 735533 735533 C T WDR24 Silent p.T581T 0.28 TCGA-A6-5661-01 16 79632851 79632851 C T MAF Missense_Mutation p.E317K 0.24 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 16 79632962 79632962 C T MAF Missense_Mutation p.G280R 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 16 81348861 81348861 T C GAN Missense_Mutation p.L48P 0.37 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 16 87743098 87743098 G A KLHDC4 Missense_Mutation p.S407L 0.24 tolerated(0.36) benign(0.001) TCGA-A6-5661-01 16 88039741 88039741 G A BANP Silent p.P167P 0.32 TCGA-A6-5661-01 16 88780611 88780611 C A CTU2 Missense_Mutation p.P358H 0.25 deleterious(0.01) probably_damaging(1) TCGA-A6-5661-01 16 89350202 89350202 G T ANKRD11 Missense_Mutation p.N916K 0.31 benign(0.164) TCGA-A6-5661-01 16 89355002 89355002 C A ANKRD11 Missense_Mutation p.E226D 0.28 probably_damaging(0.973) TCGA-A6-5661-01 16 89657453 89657453 C T CPNE7 Silent p.D460D 0.36 TCGA-A6-5661-01 16 89789110 89789110 G A ZNF276 Missense_Mutation p.R126H 0.32 tolerated(0.66) benign(0.005) TCGA-A6-5661-01 17 11650944 11650944 G T DNAH9 Missense_Mutation p.K2157N 0.30 benign(0.111) TCGA-A6-5661-01 17 11687751 11687751 C T DNAH9 Silent p.I2652I 0.39 TCGA-A6-5661-01 17 1538676 1538676 C T SCARF1 Silent p.A623A 0.36 TCGA-A6-5661-01 17 15492526 15492526 G A CDRT1 Silent p.H674H 0.32 TCGA-A6-5661-01 17 15519055 15519055 A G RP11-385D13.1 Missense_Mutation p.S502P 0.34 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-A6-5661-01 17 16593810 16593810 G - CCDC144A Frame_Shift_Del p.D34Tfs*36 0.27 TCGA-A6-5661-01 17 18681878 18681878 C A FBXW10 Missense_Mutation p.P809H 0.31 deleterious(0) probably_damaging(0.954) TCGA-A6-5661-01 17 20799142 20799142 G A CCDC144NL Silent p.H64H 0.20 TCGA-A6-5661-01 17 21320007 21320007 G A KCNJ12 3'UTR 0.10 TCGA-A6-5661-01 17 2267463 2267463 C T SGSM2 Silent p.S306S 0.14 TCGA-A6-5661-01 17 2601442 2601442 C T CLUH Missense_Mutation p.R532Q 0.39 tolerated(0.13) benign(0.025) TCGA-A6-5661-01 17 26495622 26495622 G A NLK Missense_Mutation p.C329Y 0.11 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 17 27278035 27278035 G - PHF12 5'UTR 0.22 TCGA-A6-5661-01 17 29587516 29587516 G C NF1 Missense_Mutation p.Q1520H 0.21 tolerated(0.13) probably_damaging(0.976) TCGA-A6-5661-01 17 29631961 29631961 C G EVI2B Missense_Mutation p.V223L 0.32 tolerated(0.34) benign(0.005) TCGA-A6-5661-01 17 31048196 31048196 G A MYO1D Silent p.Y586Y 0.36 TCGA-A6-5661-01 17 31147 31147 G A DOC2B Missense_Mutation p.R42W 0.45 deleterious(0.02) probably_damaging(0.942) TCGA-A6-5661-01 17 32908127 32908127 C G TMEM132E Missense_Mutation p.A11G 0.29 tolerated_low_confidence(0.51) unknown(0) TCGA-A6-5661-01 17 33884425 33884425 T - SLFN14 Frame_Shift_Del p.V220Sfs*43 0.25 TCGA-A6-5661-01 17 34091023 34091023 C T C17orf50 Intron 0.47 TCGA-A6-5661-01 17 34182246 34182246 G A C17orf66 Nonsense_Mutation p.R512* 0.31 TCGA-A6-5661-01 17 34587266 34587266 G A TBC1D3C Silent p.Y163Y 0.57 TCGA-A6-5661-01 17 37347755 37347755 T C CACNB1 Missense_Mutation p.Q88R 0.29 deleterious(0.04) possibly_damaging(0.627) TCGA-A6-5661-01 17 38458315 38458315 T - CDC6 3'UTR 0.21 TCGA-A6-5661-01 17 39093004 39093004 T C KRT23 5'UTR 0.33 TCGA-A6-5661-01 17 3912207 3912207 C T ZZEF1 Silent p.T2925T 0.54 TCGA-A6-5661-01 17 39240694 39240694 G A KRTAP4-7 Missense_Mutation p.C79Y 0.27 deleterious(0.01) unknown(0) TCGA-A6-5661-01 17 39551203 39551203 G T KRT31 Missense_Mutation p.L332M 0.12 tolerated(0.11) probably_damaging(0.951) TCGA-A6-5661-01 17 40001824 40001824 C T KLHL10 Silent p.C377C 0.35 TCGA-A6-5661-01 17 40706527 40706527 G A HSD17B1 Missense_Mutation p.R215H 0.32 deleterious(0.03) benign(0.001) TCGA-A6-5661-01 17 40734219 40734219 A G FAM134C Missense_Mutation p.M338T 0.33 tolerated(0.39) benign(0.004) TCGA-A6-5661-01 17 40822002 40822002 G C PLEKHH3 Nonsense_Mutation p.Y649* 0.38 TCGA-A6-5661-01 17 40823100 40823100 C T PLEKHH3 Missense_Mutation p.A445T 0.29 tolerated(0.75) unknown(0) TCGA-A6-5661-01 17 40865275 40865277 CTT - EZH1 In_Frame_Del p.E385del 0.10 TCGA-A6-5661-01 17 40914379 40914379 C T RAMP2 Missense_Mutation p.T57M 0.30 tolerated(0.38) benign(0.001) TCGA-A6-5661-01 17 40996864 40996864 G A AOC2 Missense_Mutation p.R74Q 0.29 tolerated(1) benign(0.001) TCGA-A6-5661-01 17 41154930 41154930 G A RPL27 Missense_Mutation p.R135Q 0.30 tolerated(0.09) benign(0.037) TCGA-A6-5661-01 17 41178031 41178031 C T RND2 Missense_Mutation p.R53C 0.38 deleterious(0) possibly_damaging(0.816) TCGA-A6-5661-01 17 41478478 41478478 G - ARL4D 3'UTR 0.22 TCGA-A6-5661-01 17 41903172 41903172 G A MPP3 Silent p.N187N 0.11 TCGA-A6-5661-01 17 42255791 42255792 - C ASB16 3'UTR 0.31 TCGA-A6-5661-01 17 42266576 42266576 C T TMUB2 Silent p.G74G 0.27 TCGA-A6-5661-01 17 42460963 42460963 C T ITGA2B Missense_Mutation p.A370T 0.32 tolerated(0.65) benign(0) TCGA-A6-5661-01 17 43332971 43332971 C A SPATA32 Missense_Mutation p.R193L 0.27 deleterious(0.02) benign(0.231) TCGA-A6-5661-01 17 43348522 43348522 G A MAP3K14-AS1 3'Flank 0.33 TCGA-A6-5661-01 17 4434047 4434047 T C SPNS2 Missense_Mutation p.S232P 0.26 deleterious(0.01) possibly_damaging(0.874) TCGA-A6-5661-01 17 4445984 4445984 A G MYBBP1A Missense_Mutation p.L982P 0.13 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 17 45056519 45056519 C T RPRML 5'UTR 0.46 TCGA-A6-5661-01 17 45481336 45481336 A G EFCAB13 Missense_Mutation p.K704E 0.32 tolerated(0.29) benign(0.222) TCGA-A6-5661-01 17 45901574 45901574 C T MRPL10 Silent p.S271S 0.10 TCGA-A6-5661-01 17 46878651 46878651 G A TTLL6 Missense_Mutation p.R193C 0.31 deleterious(0.01) benign(0) TCGA-A6-5661-01 17 47119652 47119652 G - IGF2BP1 Frame_Shift_Del p.A332Pfs*12 0.30 TCGA-A6-5661-01 17 47583905 47583905 C T NGFR Silent p.D151D 0.33 TCGA-A6-5661-01 17 4872500 4872500 G A CAMTA2 Missense_Mutation p.R1162C 0.27 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 17 48753281 48753282 - G ABCC3 Frame_Shift_Ins p.L968Afs*31 0.33 TCGA-A6-5661-01 17 48917621 48917621 G A WFIKKN2 Silent p.P324P 0.28 TCGA-A6-5661-01 17 49043541 49043541 T C SPAG9 3'UTR 0.33 TCGA-A6-5661-01 17 55693381 55693381 A G MSI2 Silent p.T196T 0.38 TCGA-A6-5661-01 17 56232781 56232781 C T OR4D1 Silent p.T89T 0.22 TCGA-A6-5661-01 17 56386089 56386089 C A BZRAP1 Missense_Mutation p.S1515I 0.35 deleterious(0.05) possibly_damaging(0.467) TCGA-A6-5661-01 17 56439993 56439993 C T RNF43 Nonsense_Mutation p.W200* 0.26 TCGA-A6-5661-01 17 56572382 56572382 G A MTMR4 Nonsense_Mutation p.R1041* 0.35 TCGA-A6-5661-01 17 57741237 57741237 A G CLTC Missense_Mutation p.K468R 0.33 tolerated(0.78) benign(0.043) TCGA-A6-5661-01 17 58128255 58128255 G A HEATR6 Silent p.S791S 0.09 TCGA-A6-5661-01 17 59560581 59560581 G A TBX4 Missense_Mutation p.A448T 0.17 tolerated(0.11) benign(0.002) TCGA-A6-5661-01 17 63221441 63221441 C T RGS9 Missense_Mutation p.R577C 0.32 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-A6-5661-01 17 6329868 6329868 A G AIPL1 Intron 0.46 TCGA-A6-5661-01 17 66986044 66986044 G A ABCA9 Missense_Mutation p.R1289W 0.31 deleterious(0) benign(0.246) TCGA-A6-5661-01 17 70117613 70117613 C T SOX9 Silent p.S27S 0.36 TCGA-A6-5661-01 17 7162107 7162107 G T ELP5 Intron 0.18 TCGA-A6-5661-01 17 7224932 7224932 G A NEURL4 Missense_Mutation p.R1016C 0.38 tolerated(0.16) probably_damaging(0.984) TCGA-A6-5661-01 17 72281320 72281320 G A DNAI2 Missense_Mutation p.A109T 0.26 tolerated(1) benign(0.001) TCGA-A6-5661-01 17 7250489 7250489 G A ACAP1 Missense_Mutation p.R424Q 0.09 deleterious(0.03) benign(0.417) TCGA-A6-5661-01 17 72919202 72919202 C T USH1G 5'UTR 0.18 TCGA-A6-5661-01 17 7339674 7339674 T - TMEM102 Frame_Shift_Del p.S127Hfs*37 0.25 TCGA-A6-5661-01 17 73754428 73754428 C A GALK1 Nonsense_Mutation p.E324* 0.16 TCGA-A6-5661-01 17 73924208 73924209 - T FBF1 Frame_Shift_Ins p.A102Sfs*43 0.25 TCGA-A6-5661-01 17 73945365 73945365 A T ACOX1 Missense_Mutation p.V554D 0.09 deleterious(0) probably_damaging(0.996) TCGA-A6-5661-01 17 74078598 74078598 G A ZACN Missense_Mutation p.R368H 0.26 tolerated(1) benign(0) TCGA-A6-5661-01 17 75199740 75199740 C T SEC14L1 Silent p.Y366Y 0.23 TCGA-A6-5661-01 17 7533485 7533485 C T SHBG 5'UTR 0.37 TCGA-A6-5661-01 17 76089762 76089762 C T TNRC6C Silent p.D1405D 0.38 TCGA-A6-5661-01 17 76235186 76235186 C A TMEM235 Missense_Mutation p.P164Q 0.36 tolerated(0.48) possibly_damaging(0.747) TCGA-A6-5661-01 17 7678607 7678607 G A DNAH2 Missense_Mutation p.D1590N 0.26 probably_damaging(0.977) TCGA-A6-5661-01 17 76799620 76799620 C T USP36 Missense_Mutation p.R886K 0.10 tolerated(0.13) benign(0.228) TCGA-A6-5661-01 17 7736238 7736238 C - DNAH2 Frame_Shift_Del p.K4326Rfs*84 0.25 TCGA-A6-5661-01 17 7750214 7750214 A C KDM6B Silent p.P263P 0.31 TCGA-A6-5661-01 17 77987334 77987334 G A TBC1D16 Missense_Mutation p.R5C 0.32 deleterious(0.01) probably_damaging(0.97) TCGA-A6-5661-01 17 78319411 78319411 A G RNF213 Missense_Mutation p.K2426E 0.31 probably_damaging(0.998) TCGA-A6-5661-01 17 78867580 78867580 C T RPTOR Silent p.P772P 0.34 TCGA-A6-5661-01 17 79411725 79411726 - C RP11-1055B8.7 Frame_Shift_Ins p.G851Rfs*229 0.38 TCGA-A6-5661-01 17 79428997 79428997 C T RP11-1055B8.7 Silent p.S2436S 0.29 TCGA-A6-5661-01 17 80053281 80053283 GAA - FASN In_Frame_Del p.F65del 0.32 TCGA-A6-5661-01 17 8020176 8020176 G T ALOXE3 Silent p.T222T 0.31 TCGA-A6-5661-01 17 80211113 80211113 C T CSNK1D Missense_Mutation p.R115H 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A6-5661-01 17 8050230 8050230 G A PER1 Missense_Mutation p.R574W 0.43 tolerated(0.13) benign(0.002) TCGA-A6-5661-01 17 80708632 80708632 C T FN3K 3'UTR 0.47 TCGA-A6-5661-01 17 8384696 8384696 G A MYH10 Silent p.H1736H 0.44 TCGA-A6-5661-01 17 8926152 8926152 G A NTN1 Silent p.P154P 0.37 TCGA-A6-5661-01 17 9801318 9801318 C T RCVRN 3'UTR 0.42 TCGA-A6-5661-01 17 995066 995066 C T ABR Missense_Mutation p.A124T 0.35 deleterious(0) possibly_damaging(0.897) TCGA-A6-5661-01 18 10680336 10680336 T - PIEZO2 Frame_Shift_Del p.E2492Kfs*3 0.26 TCGA-A6-5661-01 18 11851576 11851577 - A CHMP1B Frame_Shift_Ins p.C25Mfs*3 0.36 TCGA-A6-5661-01 18 12706606 12706606 C T PSMG2 Silent p.L39L 0.13 TCGA-A6-5661-01 18 13387678 13387678 G T LDLRAD4 5'UTR 0.33 TCGA-A6-5661-01 18 14105369 14105369 G A ZNF519 Silent p.Y390Y 0.36 TCGA-A6-5661-01 18 19075668 19075668 G A GREB1L Missense_Mutation p.R1023Q 0.12 tolerated(0.86) possibly_damaging(0.564) TCGA-A6-5661-01 18 24127680 24127680 C T KCTD1 Intron 0.27 TCGA-A6-5661-01 18 25543389 25543389 C T CDH2 Missense_Mutation p.A816T 0.20 tolerated(0.2) possibly_damaging(0.453) TCGA-A6-5661-01 18 29848284 29848284 G - GAREM Frame_Shift_Del p.R728Gfs*5 0.14 TCGA-A6-5661-01 18 335071 335071 C T COLEC12 Missense_Mutation p.R496H 0.39 deleterious(0.01) unknown(0) TCGA-A6-5661-01 18 34191936 34191937 - A FHOD3 Frame_Shift_Ins p.D280Rfs*29 0.27 TCGA-A6-5661-01 18 3534336 3534336 C A DLGAP1 Missense_Mutation p.D779Y 0.37 deleterious(0.01) probably_damaging(0.942) TCGA-A6-5661-01 18 42281472 42281472 G A SETBP1 Missense_Mutation p.R54H 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-A6-5661-01 18 47108009 47108009 G A LIPG Missense_Mutation p.A340T 0.28 deleterious(0) probably_damaging(0.936) TCGA-A6-5661-01 18 50741919 50741919 G T DCC Silent p.V621V 0.22 TCGA-A6-5661-01 18 51807269 51807269 A C POLI Silent p.I264I 0.35 TCGA-A6-5661-01 18 55021644 55021644 C T ST8SIA3 Missense_Mutation p.A64V 0.31 benign(0.059) TCGA-A6-5661-01 18 56203863 56203863 G A ALPK2 Missense_Mutation p.R1186C 0.37 deleterious(0.04) benign(0.443) TCGA-A6-5661-01 18 56205085 56205085 G T ALPK2 Silent p.S778S 0.35 TCGA-A6-5661-01 18 56247475 56247475 C T ALPK2 Missense_Mutation p.G178D 0.31 deleterious(0) benign(0.023) TCGA-A6-5661-01 18 56415083 56415083 T - MALT1 3'UTR 0.24 TCGA-A6-5661-01 18 56936210 56936210 G A RAX 3'UTR 0.35 TCGA-A6-5661-01 18 60646224 60646224 A C PHLPP1 Missense_Mutation p.S1572R 0.28 tolerated(0.36) benign(0.171) TCGA-A6-5661-01 18 61261588 61261589 - A SERPINB13 Frame_Shift_Ins p.I160Nfs*11 0.32 TCGA-A6-5661-01 18 61390746 61390746 G A SERPINB11 3'UTR 0.50 TCGA-A6-5661-01 18 66358381 66358382 - A TMX3 Intron 0.32 TCGA-A6-5661-01 18 72998443 72998443 C - TSHZ1 Frame_Shift_Del p.C318Afs*14 0.41 TCGA-A6-5661-01 18 72999858 72999858 G A TSHZ1 Silent p.L787L 0.41 TCGA-A6-5661-01 18 76754514 76754514 C T SALL3 Silent p.A841A 0.32 TCGA-A6-5661-01 18 77659650 77659650 A G KCNG2 Missense_Mutation p.Y412C 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 18 9557371 9557371 G A PPP4R1 Nonsense_Mutation p.R680* 0.34 TCGA-A6-5661-01 19 10078060 10078060 C T COL5A3 Missense_Mutation p.R1474H 0.23 unknown(0) TCGA-A6-5661-01 19 10675673 10675674 - T KRI1 Frame_Shift_Ins p.T75Nfs*21 0.13 TCGA-A6-5661-01 19 10793917 10793917 C T ILF3 Silent p.H555H 0.23 TCGA-A6-5661-01 19 10897276 10897276 C A DNM2 Missense_Mutation p.L296I 0.39 tolerated(0.2) possibly_damaging(0.778) TCGA-A6-5661-01 19 11123732 11123732 G A SMARCA4 Silent p.T794T 0.11 TCGA-A6-5661-01 19 11215905 11215905 C T LDLR Missense_Mutation p.T108M 0.23 deleterious(0.01) possibly_damaging(0.889) TCGA-A6-5661-01 19 11285277 11285277 G A KANK2 Missense_Mutation p.T655M 0.38 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 19 11465616 11465616 C A CCDC159 3'UTR 0.44 TCGA-A6-5661-01 19 13059959 13059959 C T RAD23A Missense_Mutation p.P222L 0.30 tolerated(0.13) benign(0.006) TCGA-A6-5661-01 19 14070045 14070045 G A DCAF15 Missense_Mutation p.A325T 0.19 tolerated(0.12) probably_damaging(0.928) TCGA-A6-5661-01 19 14626655 14626655 G C DNAJB1 3'UTR 0.37 TCGA-A6-5661-01 19 1466304 1466304 G A APC2 Missense_Mutation p.V1002M 0.28 probably_damaging(0.971) TCGA-A6-5661-01 19 1466939 1466939 G A APC2 Silent p.T1213T 0.50 TCGA-A6-5661-01 19 15079292 15079292 G A SLC1A6 Missense_Mutation p.T124M 0.24 deleterious(0) benign(0.323) TCGA-A6-5661-01 19 15734566 15734566 A G CYP4F8 RNA 0.20 TCGA-A6-5661-01 19 15769322 15769322 T - CYP4F3 Frame_Shift_Del p.F425Lfs*54 0.39 TCGA-A6-5661-01 19 16275656 16275656 C T CIB3 Missense_Mutation p.G139R 0.26 tolerated(0.24) benign(0.16) TCGA-A6-5661-01 19 16757930 16757930 C T SMIM7 3'UTR 0.29 TCGA-A6-5661-01 19 16872816 16872816 G A NWD1 Missense_Mutation p.R667H 0.13 deleterious(0) possibly_damaging(0.618) TCGA-A6-5661-01 19 16980774 16980774 G A SIN3B Silent p.A802A 0.10 TCGA-A6-5661-01 19 17452041 17452041 C A GTPBP3 Missense_Mutation p.P420H 0.46 tolerated(0.11) possibly_damaging(0.605) TCGA-A6-5661-01 19 17683350 17683350 C T COLGALT1 Silent p.R296R 0.38 TCGA-A6-5661-01 19 17838538 17838538 C T MAP1S Missense_Mutation p.T782M 0.46 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 19 1790807 1790807 G A ATP8B3 Missense_Mutation p.A776V 0.28 deleterious(0) probably_damaging(0.923) TCGA-A6-5661-01 19 18260547 18260547 G A MAST3 3'UTR 0.36 TCGA-A6-5661-01 19 1827792 1827792 G A REXO1 Silent p.G332G 0.38 TCGA-A6-5661-01 19 18343889 18343889 C T PDE4C Missense_Mutation p.R38H 0.44 tolerated_low_confidence(0.06) probably_damaging(0.98) TCGA-A6-5661-01 19 18649180 18649180 G A FKBP8 Silent p.D206D 0.36 TCGA-A6-5661-01 19 1953887 1953887 C T CSNK1G2 Intron 0.39 TCGA-A6-5661-01 19 20296853 20296853 T C ZNF486 Missense_Mutation p.L72P 0.25 deleterious(0) probably_damaging(0.993) TCGA-A6-5661-01 19 2127198 2127198 G A AP3D1 Missense_Mutation p.T270M 0.51 deleterious(0) probably_damaging(0.994) TCGA-A6-5661-01 19 2246918 2246918 G A SF3A2 Missense_Mutation p.R148H 0.14 deleterious_low_confidence(0.03) probably_damaging(0.972) TCGA-A6-5661-01 19 22575688 22575688 G A ZNF98 Missense_Mutation p.R117C 0.28 deleterious(0.01) benign(0.005) TCGA-A6-5661-01 19 2289900 2289900 G A LINGO3 3'UTR 0.47 TCGA-A6-5661-01 19 2340959 2340959 G A SPPL2B RNA 0.26 TCGA-A6-5661-01 19 2430801 2430801 G A LMNB2 3'UTR 0.12 TCGA-A6-5661-01 19 30017563 30017563 G A VSTM2B Missense_Mutation p.V25M 0.20 tolerated(0.22) benign(0.027) TCGA-A6-5661-01 19 30935025 30935025 G A ZNF536 Missense_Mutation p.G186S 0.38 tolerated(0.23) probably_damaging(0.999) TCGA-A6-5661-01 19 3530796 3530796 C T FZR1 Missense_Mutation p.R221W 0.26 deleterious(0) probably_damaging(0.993) TCGA-A6-5661-01 19 35660553 35660553 C T FXYD5 3'UTR 0.24 TCGA-A6-5661-01 19 36215593 36215593 G A KMT2B Silent p.Q1130Q 0.17 TCGA-A6-5661-01 19 36220997 36220997 C T KMT2B Nonsense_Mutation p.Q1683* 0.32 TCGA-A6-5661-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.30 TCGA-A6-5661-01 19 3644220 3644220 G A PIP5K1C Missense_Mutation p.R459C 0.10 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 19 36501885 36501885 C T ALKBH6 Missense_Mutation p.V111M 0.35 tolerated(0.28) probably_damaging(0.956) TCGA-A6-5661-01 19 3738918 3738918 C T TJP3 Missense_Mutation p.R482C 0.34 deleterious(0.01) possibly_damaging(0.84) TCGA-A6-5661-01 19 37879222 37879222 T C ZNF527 Missense_Mutation p.C91R 0.26 tolerated(0.3) benign(0.133) TCGA-A6-5661-01 19 38704360 38704360 G A DPF1 Missense_Mutation p.T339M 0.36 tolerated(0.66) benign(0.229) TCGA-A6-5661-01 19 39207844 39207844 C T ACTN4 Missense_Mutation p.P344L 0.43 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 19 39691042 39691042 C T NCCRP1 Missense_Mutation p.A202V 0.42 deleterious(0) probably_damaging(0.983) TCGA-A6-5661-01 19 40834431 40834431 G A C19orf47 Silent p.L147L 0.31 TCGA-A6-5661-01 19 422406 422406 C T SHC2 Missense_Mutation p.V454M 0.33 tolerated(0.21) benign(0.008) TCGA-A6-5661-01 19 42793520 42793520 T C CIC Missense_Mutation p.M441T 0.12 probably_damaging(0.943) TCGA-A6-5661-01 19 42858077 42858077 G T MEGF8 Missense_Mutation p.W1237C 0.36 deleterious(0) probably_damaging(0.982) TCGA-A6-5661-01 19 43343835 43343835 C A PSG10P 3'Flank 0.19 TCGA-A6-5661-01 19 43358315 43358315 T C PSG10P RNA 0.35 TCGA-A6-5661-01 19 43372177 43372177 T - PSG1 3'UTR 0.21 TCGA-A6-5661-01 19 44030280 44030280 C A ETHE1 Intron 0.30 TCGA-A6-5661-01 19 44515614 44515614 T C ZNF230 Nonstop_Mutation p.*475Qext*19 0.39 TCGA-A6-5661-01 19 44777393 44777393 T C ZNF233 Missense_Mutation p.Y194H 0.38 tolerated(0.16) possibly_damaging(0.488) TCGA-A6-5661-01 19 44981600 44981600 C T ZNF180 Silent p.S366S 0.13 TCGA-A6-5661-01 19 4544448 4544448 G A SEMA6B Missense_Mutation p.A611V 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-A6-5661-01 19 45860929 45860929 G A ERCC2 Silent p.D422D 0.29 TCGA-A6-5661-01 19 46005583 46005583 A C PPM1N 3'Flank 0.30 TCGA-A6-5661-01 19 46281418 46281418 G A DMPK Silent p.F224F 0.35 TCGA-A6-5661-01 19 46281802 46281802 G A DMPK Missense_Mutation p.A187V 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-A6-5661-01 19 47151674 47151674 G T DACT3 3'UTR 0.32 TCGA-A6-5661-01 19 47260615 47260615 G T FKRP 3'UTR 0.25 TCGA-A6-5661-01 19 47280334 47280334 G A SLC1A5 Missense_Mutation p.A429V 0.29 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 19 47549939 47549939 G T TMEM160 Missense_Mutation p.F71L 0.30 deleterious(0.01) probably_damaging(0.916) TCGA-A6-5661-01 19 47673136 47673136 A T SAE1 Missense_Mutation p.K230M 0.30 deleterious(0.01) benign(0.095) TCGA-A6-5661-01 19 47885282 47885282 T C DHX34 Missense_Mutation p.L1115P 0.38 tolerated(0.1) probably_damaging(0.961) TCGA-A6-5661-01 19 48006732 48006732 G A NAPA Silent p.C42C 0.12 TCGA-A6-5661-01 19 48374808 48374808 C A SULT2A1 Missense_Mutation p.W254C 0.15 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 19 49104545 49104545 C - FAM83E Frame_Shift_Del p.E420Kfs*121 0.41 TCGA-A6-5661-01 19 49123768 49123768 G A SPHK2 5'UTR 0.33 TCGA-A6-5661-01 19 49249130 49249130 C T IZUMO1 5'UTR 0.14 TCGA-A6-5661-01 19 49714078 49714078 G A TRPM4 Missense_Mutation p.R1147H 0.44 deleterious(0.01) possibly_damaging(0.776) TCGA-A6-5661-01 19 50138992 50138992 G A RRAS Missense_Mutation p.R191W 0.24 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 19 50310455 50310455 G A FUZ Nonsense_Mutation p.R404* 0.32 TCGA-A6-5661-01 19 50906796 50906796 G A POLD1 Missense_Mutation p.G395D 0.08 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 19 50912857 50912857 C T POLD1 Silent p.S696S 0.15 TCGA-A6-5661-01 19 51021814 51021814 G A LRRC4B Missense_Mutation p.R386C 0.13 deleterious(0) probably_damaging(0.974) TCGA-A6-5661-01 19 51022288 51022288 G A LRRC4B Silent p.L228L 0.42 TCGA-A6-5661-01 19 51169457 51169457 C T SHANK1 Silent p.Q1920Q 0.43 TCGA-A6-5661-01 19 51293729 51293729 C G ACPT Missense_Mutation p.L20V 0.31 tolerated(0.27) benign(0.001) TCGA-A6-5661-01 19 51960819 51960819 G A SIGLEC8 Missense_Mutation p.T210I 0.31 deleterious(0.02) possibly_damaging(0.649) TCGA-A6-5661-01 19 52521663 52521663 G A ZNF614 Missense_Mutation p.R34W 0.30 tolerated(0.17) benign(0.003) TCGA-A6-5661-01 19 52942130 52942130 A G ZNF534 Missense_Mutation p.K486E 0.09 deleterious(0.02) possibly_damaging(0.905) TCGA-A6-5661-01 19 53384868 53384868 T C ZNF320 Missense_Mutation p.S171G 0.24 tolerated(0.13) benign(0.003) TCGA-A6-5661-01 19 54631451 54631451 G T PRPF31 Missense_Mutation p.G317C 0.15 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 19 54692170 54692170 G A MBOAT7 Missense_Mutation p.A36V 0.09 tolerated(0.2) benign(0.066) TCGA-A6-5661-01 19 54946737 54946737 C A TTYH1 Missense_Mutation p.L381M 0.32 tolerated(0.06) probably_damaging(0.97) TCGA-A6-5661-01 19 56135826 56135826 C T ZNF784 Intron 0.36 TCGA-A6-5661-01 19 56369884 56369884 C T NLRP4 Silent p.F375F 0.39 TCGA-A6-5661-01 19 56370337 56370337 G C NLRP4 Missense_Mutation p.E526D 0.30 deleterious(0.02) benign(0.042) TCGA-A6-5661-01 19 56538824 56538824 G A NLRP5 Missense_Mutation p.V409I 0.30 tolerated(0.07) possibly_damaging(0.718) TCGA-A6-5661-01 19 56538965 56538965 C T NLRP5 Missense_Mutation p.R456C 0.33 tolerated(0.12) benign(0.003) TCGA-A6-5661-01 19 56599998 56599998 C T ZNF787 Silent p.P181P 0.50 TCGA-A6-5661-01 19 56733583 56733583 G A ZSCAN5A Silent p.H284H 0.24 TCGA-A6-5661-01 19 56888746 56888746 C T AC006116.24 5'Flank 0.20 TCGA-A6-5661-01 19 57176091 57176091 G A ZNF835 Missense_Mutation p.T159M 0.30 deleterious(0) possibly_damaging(0.733) TCGA-A6-5661-01 19 57773542 57773542 C T CTC-444N24.8 RNA 0.29 TCGA-A6-5661-01 19 5783580 5783580 G A PRR22 Silent p.P226P 0.34 TCGA-A6-5661-01 19 57953332 57953332 T C ZNF749 Missense_Mutation p.L32P 0.31 deleterious(0) probably_damaging(0.973) TCGA-A6-5661-01 19 58386076 58386076 T C ZNF814 Missense_Mutation p.I228V 0.18 tolerated(0.25) benign(0.001) TCGA-A6-5661-01 19 58549261 58549261 G A ZSCAN1 Silent p.P19P 0.50 TCGA-A6-5661-01 19 58868287 58868287 C T ZNF497 Missense_Mutation p.V239M 0.27 deleterious(0.01) possibly_damaging(0.557) TCGA-A6-5661-01 19 58983134 58983134 C T ZNF324 Silent p.F425F 0.33 TCGA-A6-5661-01 19 6007159 6007159 G A RFX2 Silent p.G422G 0.19 TCGA-A6-5661-01 19 6470323 6470323 T C DENND1C Missense_Mutation p.K449E 0.24 deleterious(0) benign(0.219) TCGA-A6-5661-01 19 648206 648206 A G RNF126 Silent p.T286T 0.31 TCGA-A6-5661-01 19 6848029 6848029 G A VAV1 Missense_Mutation p.R678Q 0.45 deleterious(0) benign(0.315) TCGA-A6-5661-01 19 7083334 7083334 A G ZNF557 Missense_Mutation p.H291R 0.30 tolerated(0.09) possibly_damaging(0.702) TCGA-A6-5661-01 19 7705674 7705674 G A STXBP2 Missense_Mutation p.A102T 0.26 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 19 806463 806463 G T PTBP1 Silent p.A342A 0.45 TCGA-A6-5661-01 19 8171003 8171003 C T FBN3 Missense_Mutation p.R1601H 0.39 tolerated(0.05) possibly_damaging(0.568) TCGA-A6-5661-01 19 8578104 8578104 G A ZNF414 Missense_Mutation p.S42L 0.20 tolerated_low_confidence(0.13) benign(0) TCGA-A6-5661-01 19 9072507 9072507 G T MUC16 Missense_Mutation p.P4980H 0.37 unknown(0) TCGA-A6-5661-01 19 9965420 9965420 C T OLFM2 Silent p.T269T 0.20 TCGA-A6-5661-01 1 100568545 100568545 G A SASS6 Missense_Mutation p.A547V 0.16 tolerated(0.41) benign(0.008) TCGA-A6-5661-01 1 10364109 10364109 C T KIF1B Intron 0.39 TCGA-A6-5661-01 1 104160029 104160029 T A AMY2A 5'UTR 0.26 TCGA-A6-5661-01 1 104162291 104162291 G A AMY2A Missense_Mutation p.R210K 0.11 deleterious(0) possibly_damaging(0.769) TCGA-A6-5661-01 1 107979391 107979391 C T NTNG1 Missense_Mutation p.P454S 0.16 tolerated(0.06) unknown(0) TCGA-A6-5661-01 1 109456966 109456966 G A GPSM2 Missense_Mutation p.R400H 0.30 deleterious(0) possibly_damaging(0.621) TCGA-A6-5661-01 1 109883377 109883377 G A SORT1 Silent p.R411R 0.35 TCGA-A6-5661-01 1 110170839 110170839 C A AMPD2 Silent p.V459V 0.47 TCGA-A6-5661-01 1 110754425 110754425 G A KCNC4 Missense_Mutation p.V102I 0.30 tolerated(0.17) benign(0.007) TCGA-A6-5661-01 1 110946580 110946580 G A LAMTOR5 Missense_Mutation p.P141L 0.08 deleterious(0.04) benign(0.162) TCGA-A6-5661-01 1 111992097 111992097 T C ATP5F1 5'UTR 0.38 TCGA-A6-5661-01 1 113126663 113126663 C T ST7L Missense_Mutation p.A263T 0.33 deleterious(0.02) possibly_damaging(0.685) TCGA-A6-5661-01 1 114523308 114523308 C A OLFML3 Intron 0.32 TCGA-A6-5661-01 1 116245596 116245596 C T CASQ2 Silent p.K320K 0.29 TCGA-A6-5661-01 1 116280928 116280928 C T CASQ2 Missense_Mutation p.S150N 0.34 tolerated(1) benign(0) TCGA-A6-5661-01 1 11709918 11709919 - T FBXO2 Frame_Shift_Ins p.A179Sfs*5 0.30 TCGA-A6-5661-01 1 117644048 117644049 - A TTF2 Frame_Shift_Ins p.K1134Efs*22 0.17 TCGA-A6-5661-01 1 120436491 120436491 A - ADAM30 3'UTR 0.09 TCGA-A6-5661-01 1 1235983 1235983 G A ACAP3 Missense_Mutation p.P143L 0.44 deleterious(0) benign(0.349) TCGA-A6-5661-01 1 1247977 1247977 C T CPSF3L Silent p.A472A 0.31 TCGA-A6-5661-01 1 1289857 1289857 T C MXRA8 Missense_Mutation p.N328D 0.28 deleterious(0.02) benign(0.339) TCGA-A6-5661-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.40 TCGA-A6-5661-01 1 1322654 1322654 C T CCNL2 Missense_Mutation p.R507H 0.37 tolerated_low_confidence(0.45) benign(0.015) TCGA-A6-5661-01 1 144931183 144931183 C T PDE4DIP Intron 0.19 TCGA-A6-5661-01 1 145282158 145282158 C T NOTCH2NL 3'UTR 0.17 TCGA-A6-5661-01 1 145290499 145290499 T C NBPF10 5'Flank 0.05 TCGA-A6-5661-01 1 1463227 1463227 C G ATAD3A Missense_Mutation p.A545G 0.33 deleterious(0.02) possibly_damaging(0.579) TCGA-A6-5661-01 1 1480361 1480362 - A SSU72 Frame_Shift_Ins p.L82Ffs*8 0.29 TCGA-A6-5661-01 1 149907507 149907507 G T MTMR11 Silent p.T78T 0.23 TCGA-A6-5661-01 1 150307465 150307465 G A PRPF3 Missense_Mutation p.R263H 0.41 tolerated(0.07) benign(0.042) TCGA-A6-5661-01 1 150529171 150529171 G A ADAMTSL4 Missense_Mutation p.G551S 0.24 tolerated(0.15) benign(0.274) TCGA-A6-5661-01 1 150529443 150529443 T - ADAMTSL4 Frame_Shift_Del p.Y595Ifs*29 0.24 TCGA-A6-5661-01 1 151380916 151380916 G A POGZ Missense_Mutation p.R735C 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-A6-5661-01 1 151773897 151773897 G A LINGO4 Silent p.G428G 0.24 TCGA-A6-5661-01 1 151826040 151826040 A G THEM5 Translation_Start_Site p.M1? 0.36 deleterious(0) probably_damaging(0.994) TCGA-A6-5661-01 1 152282956 152282956 C A FLG Missense_Mutation p.R1469L 0.34 benign(0.25) TCGA-A6-5661-01 1 152283463 152283463 T C FLG Missense_Mutation p.E1300G 0.30 benign(0.403) TCGA-A6-5661-01 1 153177304 153177304 C A LELP1 Missense_Mutation p.Q41K 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.486) TCGA-A6-5661-01 1 15370551 15370551 C T KAZN Silent p.L208L 0.11 TCGA-A6-5661-01 1 153751233 153751233 G T SLC27A3 Missense_Mutation p.E553D 0.31 deleterious(0.05) probably_damaging(0.955) TCGA-A6-5661-01 1 155034762 155034762 G A ADAM15 Silent p.L822L 0.11 TCGA-A6-5661-01 1 156316730 156316730 C A TSACC Missense_Mutation p.S112Y 0.19 tolerated_low_confidence(0.77) possibly_damaging(0.781) TCGA-A6-5661-01 1 156351924 156351924 G - RHBG Frame_Shift_Del p.V350Sfs*30 0.32 TCGA-A6-5661-01 1 156513999 156513999 C T IQGAP3 Missense_Mutation p.R802Q 0.12 deleterious(0.03) probably_damaging(0.99) TCGA-A6-5661-01 1 156756839 156756839 C - PRCC Frame_Shift_Del p.E322Nfs*105 0.10 TCGA-A6-5661-01 1 156884483 156884483 C - PEAR1 Frame_Shift_Del p.G1005Afs*57 0.32 TCGA-A6-5661-01 1 157559243 157559243 C T FCRL4 Missense_Mutation p.A20T 0.08 tolerated(0.25) benign(0.015) TCGA-A6-5661-01 1 158650502 158650502 T C SPTA1 Silent p.S183S 0.35 TCGA-A6-5661-01 1 158653286 158653286 C A SPTA1 Missense_Mutation p.G89W 0.31 deleterious(0) probably_damaging(0.987) TCGA-A6-5661-01 1 158655080 158655080 G A SPTA1 Missense_Mutation p.R28C 0.37 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 1 158988087 158988087 A G IFI16 Missense_Mutation p.I206M 0.39 tolerated(0.13) possibly_damaging(0.662) TCGA-A6-5661-01 1 160201110 160201110 C T DCAF8 Silent p.V349V 0.34 TCGA-A6-5661-01 1 160340873 160340873 C T NHLH1 Missense_Mutation p.R118C 0.17 deleterious(0) probably_damaging(0.965) TCGA-A6-5661-01 1 16046284 16046284 A G PLEKHM2 Missense_Mutation p.Y174C 0.22 tolerated(0.09) possibly_damaging(0.566) TCGA-A6-5661-01 1 16053632 16053632 C T PLEKHM2 Silent p.N355N 0.43 TCGA-A6-5661-01 1 160851899 160851899 C T ITLN1 Missense_Mutation p.V85M 0.35 deleterious(0.04) probably_damaging(0.971) TCGA-A6-5661-01 1 161007695 161007695 C - TSTD1 Intron 0.41 TCGA-A6-5661-01 1 161133353 161133353 A G USP21 Missense_Mutation p.D353G 0.30 deleterious(0.02) benign(0.237) TCGA-A6-5661-01 1 161161885 161161885 C A ADAMTS4 Missense_Mutation p.S686I 0.32 deleterious(0) benign(0.305) TCGA-A6-5661-01 1 16255086 16255086 G A SPEN Missense_Mutation p.R784H 0.24 probably_damaging(0.996) TCGA-A6-5661-01 1 16259374 16259375 AG - SPEN Frame_Shift_Del p.E2214Afs*11 0.47 TCGA-A6-5661-01 1 163318805 163318806 - A NUF2 Frame_Shift_Ins p.I401Nfs*2 0.27 TCGA-A6-5661-01 1 16461618 16461618 G T EPHA2 Missense_Mutation p.P499T 0.39 deleterious(0.01) probably_damaging(1) TCGA-A6-5661-01 1 167814994 167814994 G A ADCY10 Silent p.Y938Y 0.27 TCGA-A6-5661-01 1 16895590 16895590 G A NBPF1 Silent p.V864V 0.10 TCGA-A6-5661-01 1 169391388 169391388 G T CCDC181 Missense_Mutation p.P94H 0.30 tolerated(0.41) possibly_damaging(0.864) TCGA-A6-5661-01 1 171496933 171496933 C T PRRC2C Missense_Mutation p.R400C 0.32 unknown(0) TCGA-A6-5661-01 1 171548560 171548560 G A PRRC2C Silent p.P2407P 0.27 TCGA-A6-5661-01 1 172017885 172017885 A - DNM3 Frame_Shift_Del p.K445Nfs*34 0.23 TCGA-A6-5661-01 1 174976280 174976280 A G CACYBP Missense_Mutation p.M127V 0.34 deleterious(0.01) probably_damaging(0.948) TCGA-A6-5661-01 1 17563822 17563822 C T PADI1 Nonsense_Mutation p.Q443* 0.16 TCGA-A6-5661-01 1 176809335 176809335 C T PAPPA2 Silent p.D1743D 0.27 TCGA-A6-5661-01 1 177133567 177133567 G A ASTN1 Silent p.D82D 0.30 TCGA-A6-5661-01 1 17944938 17944938 G A ARHGEF10L Intron 0.45 TCGA-A6-5661-01 1 179620015 179620015 C T TDRD5 Missense_Mutation p.S605L 0.34 deleterious(0.01) benign(0.3) TCGA-A6-5661-01 1 180904432 180904432 C T KIAA1614 Missense_Mutation p.R463C 0.39 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 1 182496907 182496907 G T RGSL1 Nonsense_Mutation p.E709* 0.32 TCGA-A6-5661-01 1 182517465 182517465 G T RGSL1 Missense_Mutation p.V895F 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-A6-5661-01 1 186101490 186101490 G T HMCN1 Missense_Mutation p.A4421S 0.14 probably_damaging(0.996) TCGA-A6-5661-01 1 18958131 18958131 A G PAX7 Missense_Mutation p.M12V 0.14 tolerated_low_confidence(0.11) benign(0.002) TCGA-A6-5661-01 1 19209806 19209807 - G ALDH4A1 Frame_Shift_Ins p.S191Efs*21 0.32 TCGA-A6-5661-01 1 19644230 19644230 A G PQLC2 Missense_Mutation p.Q20R 0.34 tolerated(1) benign(0.002) TCGA-A6-5661-01 1 19670901 19670901 G A CAPZB Silent p.L228L 0.31 TCGA-A6-5661-01 1 198671624 198671624 G A PTPRC Missense_Mutation p.R183H 0.16 tolerated(0.52) benign(0.006) TCGA-A6-5661-01 1 200017462 200017462 T C NR5A2 Missense_Mutation p.I209T 0.25 tolerated(0.27) benign(0.001) TCGA-A6-5661-01 1 200978037 200978037 T C KIF21B Missense_Mutation p.M103V 0.32 tolerated(1) benign(0) TCGA-A6-5661-01 1 201839970 201839970 C T IPO9 Missense_Mutation p.T798M 0.33 deleterious(0) possibly_damaging(0.901) TCGA-A6-5661-01 1 20250061 20250061 G - PLA2G2E 5'UTR 0.28 TCGA-A6-5661-01 1 202699065 202699065 G A KDM5B Missense_Mutation p.R1423W 0.33 deleterious(0.01) benign(0.394) TCGA-A6-5661-01 1 202719811 202719811 A G KDM5B Silent p.A599A 0.12 TCGA-A6-5661-01 1 203316579 203316579 G A FMOD Missense_Mutation p.R274W 0.08 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 1 204168230 204168230 G A GOLT1A Intron 0.28 TCGA-A6-5661-01 1 204588268 204588268 G A LRRN2 Silent p.L285L 0.09 TCGA-A6-5661-01 1 206225305 206225305 G A AVPR1B Missense_Mutation p.A289T 0.34 deleterious(0.04) benign(0.143) TCGA-A6-5661-01 1 207039173 207039173 G A IL20 5'UTR 0.36 TCGA-A6-5661-01 1 208201430 208201430 C T PLXNA2 Missense_Mutation p.R1838H 0.36 deleterious(0) probably_damaging(0.991) TCGA-A6-5661-01 1 20829737 20829737 G A MUL1 Silent p.C62C 0.11 TCGA-A6-5661-01 1 20964361 20964361 G A PINK1 Silent p.P138P 0.43 TCGA-A6-5661-01 1 20998547 20998547 C T KIF17 Missense_Mutation p.R869H 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-A6-5661-01 1 210407341 210407341 A T SERTAD4 Intron 0.26 TCGA-A6-5661-01 1 21071273 21071273 C T HP1BP3 3'UTR 0.35 TCGA-A6-5661-01 1 211256223 211256223 G A KCNH1 Missense_Mutation p.R153W 0.11 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 1 21903982 21903982 C T ALPL Silent p.H472H 0.26 TCGA-A6-5661-01 1 22016496 22016496 C T USP48 Missense_Mutation p.V994I 0.28 tolerated(0.4) benign(0.004) TCGA-A6-5661-01 1 220935107 220935107 A T MARC2 Missense_Mutation p.N185I 0.39 deleterious(0.04) possibly_damaging(0.548) TCGA-A6-5661-01 1 223164010 223164010 A G DISP1 Missense_Mutation p.M195V 0.34 tolerated(0.96) benign(0) TCGA-A6-5661-01 1 226027655 226027656 - C EPHX1 Frame_Shift_Ins p.V285Rfs*24 0.35 TCGA-A6-5661-01 1 226411650 226411650 C T MIXL1 Missense_Mutation p.R90C 0.12 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 1 22924262 22924262 A G EPHA8 Missense_Mutation p.E675G 0.31 deleterious(0) possibly_damaging(0.778) TCGA-A6-5661-01 1 233802347 233802347 G A KCNK1 Missense_Mutation p.G121D 0.20 deleterious(0) probably_damaging(0.997) TCGA-A6-5661-01 1 234742925 234742931 GATGGTT C IRF2BP2 In_Frame_Del p.T573_I574del 0.15 TCGA-A6-5661-01 1 235860557 235860557 T C LYST Missense_Mutation p.I3464V 0.12 tolerated(0.51) probably_damaging(0.919) TCGA-A6-5661-01 1 235922805 235922805 C T LYST Silent p.T2116T 0.20 TCGA-A6-5661-01 1 236389764 236389764 C T ERO1LB Missense_Mutation p.R286H 0.29 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 1 236918364 236918364 C T ACTN2 Nonsense_Mutation p.Q674* 0.32 TCGA-A6-5661-01 1 236924371 236924371 C A ACTN2 Silent p.T808T 0.31 TCGA-A6-5661-01 1 236926014 236926015 GA - ACTN2 3'UTR 0.22 TCGA-A6-5661-01 1 237664094 237664094 G A RYR2 Missense_Mutation p.A763T 0.30 benign(0.342) TCGA-A6-5661-01 1 237693749 237693749 C T RYR2 Missense_Mutation p.H949Y 0.29 benign(0.173) TCGA-A6-5661-01 1 237791370 237791370 C T RYR2 Missense_Mutation p.R2144C 0.31 probably_damaging(0.973) TCGA-A6-5661-01 1 240255974 240255974 G A FMN2 Missense_Mutation p.A189T 0.33 unknown(0) TCGA-A6-5661-01 1 24121170 24121172 AGG - LYPLA2 Splice_Site p.X216_splice 0.38 TCGA-A6-5661-01 1 242253188 242253188 C T PLD5 Missense_Mutation p.D527N 0.34 tolerated_low_confidence(1) benign(0) TCGA-A6-5661-01 1 244595877 244595877 T - ADSS Frame_Shift_Del p.R126Gfs*73 0.11 TCGA-A6-5661-01 1 245133353 245133353 C T RP11-156E8.1 Missense_Mutation p.A342T 0.17 unknown(0) TCGA-A6-5661-01 1 245319705 245319705 C T KIF26B Missense_Mutation p.A62V 0.33 tolerated_low_confidence(0.51) unknown(0) TCGA-A6-5661-01 1 245847618 245847618 C T KIF26B Missense_Mutation p.A781V 0.41 deleterious(0.03) unknown(0) TCGA-A6-5661-01 1 2461285 2461285 C A HES5 Missense_Mutation p.A74S 0.26 tolerated(0.72) benign(0.032) TCGA-A6-5661-01 1 24673976 24673976 G T GRHL3 Missense_Mutation p.R521M 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-A6-5661-01 1 247592929 247592930 - T NLRP3 Frame_Shift_Ins p.S735Ffs*11 0.12 TCGA-A6-5661-01 1 248789905 248789906 - A OR2T11 Frame_Shift_Ins p.C176Lfs*2 0.58 TCGA-A6-5661-01 1 24981353 24981353 C T SRRM1 Missense_Mutation p.R350C 0.35 unknown(0) TCGA-A6-5661-01 1 26440923 26440924 CA - PDIK1L Frame_Shift_Del p.H42Rfs*3 0.28 TCGA-A6-5661-01 1 26509894 26509894 G A CNKSR1 Missense_Mutation p.E248K 0.09 deleterious(0.04) possibly_damaging(0.526) TCGA-A6-5661-01 1 26900933 26900934 - A RPS6KA1 3'Flank 0.21 TCGA-A6-5661-01 1 27480619 27480620 - G SLC9A1 Frame_Shift_Ins p.E70Rfs*6 0.34 TCGA-A6-5661-01 1 29095696 29095696 A - YTHDF2 3'UTR 0.17 TCGA-A6-5661-01 1 29139118 29139118 G A OPRD1 Missense_Mutation p.V75I 0.21 tolerated(0.59) benign(0.036) TCGA-A6-5661-01 1 29447731 29447731 G A TMEM200B Missense_Mutation p.R204W 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-A6-5661-01 1 29644433 29644433 C T PTPRU Silent p.D1239D 0.33 TCGA-A6-5661-01 1 32200815 32200815 G T BAI2 Missense_Mutation p.L1141M 0.39 deleterious(0.02) possibly_damaging(0.77) TCGA-A6-5661-01 1 32636403 32636403 G A KPNA6 Missense_Mutation p.D507N 0.22 deleterious(0.02) benign(0.023) TCGA-A6-5661-01 1 33237867 33237867 G A KIAA1522 Silent p.P1029P 0.29 TCGA-A6-5661-01 1 33333378 33333378 C T FNDC5 Missense_Mutation p.V84I 0.25 deleterious(0.04) benign(0.13) TCGA-A6-5661-01 1 33956939 33956939 G A ZSCAN20 Missense_Mutation p.A361T 0.12 deleterious(0) possibly_damaging(0.865) TCGA-A6-5661-01 1 3396421 3396421 C T ARHGEF16 Missense_Mutation p.A645V 0.33 tolerated(0.16) benign(0.068) TCGA-A6-5661-01 1 33987145 33987145 C T CSMD2 Silent p.S3361S 0.26 TCGA-A6-5661-01 1 3407108 3407108 C T MEGF6 Missense_Mutation p.G1537E 0.25 tolerated_low_confidence(0.52) benign(0.08) TCGA-A6-5661-01 1 34166143 34166143 C T CSMD2 Missense_Mutation p.S1196N 0.32 tolerated(0.39) benign(0.058) TCGA-A6-5661-01 1 35835670 35835670 A G ZMYM4 Missense_Mutation p.E294G 0.25 deleterious(0.02) benign(0.434) TCGA-A6-5661-01 1 36564418 36564418 C A COL8A2 Missense_Mutation p.L288F 0.39 tolerated(0.51) unknown(0) TCGA-A6-5661-01 1 3703417 3703417 G A LRRC47 Missense_Mutation p.S358L 0.27 tolerated(0.72) benign(0.002) TCGA-A6-5661-01 1 38259964 38259964 C T MANEAL Missense_Mutation p.A37V 0.43 tolerated(0.28) unknown(0) TCGA-A6-5661-01 1 39749085 39749085 G A MACF1 Silent p.V276V 0.10 TCGA-A6-5661-01 1 40092723 40092723 C T HEYL Missense_Mutation p.R148H 0.46 deleterious(0) probably_damaging(0.991) TCGA-A6-5661-01 1 42050003 42050003 C A HIVEP3 Missense_Mutation p.D156Y 0.31 possibly_damaging(0.907) TCGA-A6-5661-01 1 42693556 42693556 G A FOXJ3 Missense_Mutation p.R176W 0.13 deleterious(0) possibly_damaging(0.614) TCGA-A6-5661-01 1 43213939 43213939 G A LEPRE1 Silent p.N590N 0.13 TCGA-A6-5661-01 1 43738981 43738981 C A TMEM125 Silent p.I196I 0.10 TCGA-A6-5661-01 1 43748389 43748389 C A C1orf210 3'UTR 0.41 TCGA-A6-5661-01 1 43829639 43829639 C T ELOVL1 Missense_Mutation p.R263H 0.36 deleterious(0.03) benign(0.302) TCGA-A6-5661-01 1 44713652 44713652 C T ERI3 Missense_Mutation p.G297D 0.41 tolerated(0.58) benign(0.022) TCGA-A6-5661-01 1 45479964 45479964 A - UROD Intron 0.10 TCGA-A6-5661-01 1 45480657 45480658 - A UROD Frame_Shift_Ins p.C308Mfs*7 0.30 TCGA-A6-5661-01 1 45981399 45981399 C T PRDX1 Missense_Mutation p.A63T 0.25 tolerated(0.11) benign(0.323) TCGA-A6-5661-01 1 46156727 46156727 C - TMEM69 5'UTR 0.24 TCGA-A6-5661-01 1 48701423 48701423 C T SLC5A9 Silent p.A413A 0.16 TCGA-A6-5661-01 1 52256237 52256237 G A NRD1 Nonsense_Mutation p.Q1114* 0.30 TCGA-A6-5661-01 1 52880523 52880523 A G PRPF38A Missense_Mutation p.K280R 0.46 tolerated(0.24) unknown(0) TCGA-A6-5661-01 1 54291559 54291559 A - NDC1 Frame_Shift_Del p.F169Sfs*3 0.22 TCGA-A6-5661-01 1 55622635 55622635 T - USP24 Frame_Shift_Del p.I478Ffs*12 0.09 TCGA-A6-5661-01 1 65157262 65157262 C T CACHD1 3'UTR 0.35 TCGA-A6-5661-01 1 6556595 6556595 G A PLEKHG5 Silent p.R36R 0.36 TCGA-A6-5661-01 1 66102302 66102302 G T LEPR Missense_Mutation p.Q1034H 0.35 deleterious(0.04) possibly_damaging(0.873) TCGA-A6-5661-01 1 6638968 6638968 G A TAS1R1 Missense_Mutation p.G617D 0.36 deleterious(0.03) benign(0.102) TCGA-A6-5661-01 1 66834615 66834616 TG - PDE4B Frame_Shift_Del p.C604* 0.09 TCGA-A6-5661-01 1 67109364 67109364 G A SGIP1 Missense_Mutation p.A141T 0.11 deleterious(0) probably_damaging(0.98) TCGA-A6-5661-01 1 67306260 67306260 A G WDR78 Silent p.H462H 0.34 TCGA-A6-5661-01 1 75218075 75218076 - A TYW3 Frame_Shift_Ins p.M178Nfs*9 0.10 TCGA-A6-5661-01 1 7724412 7724412 C T CAMTA1 Missense_Mutation p.T602M 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.542) TCGA-A6-5661-01 1 79356812 79356812 G A ELTD1 3'UTR 0.26 TCGA-A6-5661-01 1 8420188 8420188 C T RERE Missense_Mutation p.A1127T 0.23 unknown(0) TCGA-A6-5661-01 1 87569227 87569227 G A HS2ST1 Missense_Mutation p.A267T 0.20 tolerated(0.6) benign(0.008) TCGA-A6-5661-01 1 907495 907497 AGA - PLEKHN1 In_Frame_Del p.K278del 0.40 TCGA-A6-5661-01 1 9164619 9164619 C T GPR157 Silent p.R289R 0.34 TCGA-A6-5661-01 1 91778914 91778914 G T HFM1 Missense_Mutation p.P1128H 0.23 deleterious(0.03) benign(0.177) TCGA-A6-5661-01 1 92979405 92979405 A G EVI5 Silent p.D747D 0.31 TCGA-A6-5661-01 1 9324775 9324775 G A H6PD Silent p.K741K 0.08 TCGA-A6-5661-01 1 94079506 94079506 G - BCAR3 Intron 0.27 TCGA-A6-5661-01 1 94655733 94655733 C T ARHGAP29 Intron 0.32 TCGA-A6-5661-01 1 97243461 97243461 C G PTBP2 Missense_Mutation p.L223V 0.33 tolerated(0.16) possibly_damaging(0.5) TCGA-A6-5661-01 1 9775719 9775719 C T PIK3CD Missense_Mutation p.R88C 0.32 deleterious(0.03) probably_damaging(0.952) TCGA-A6-5661-01 1 98039506 98039506 T C DPYD Silent p.E383E 0.31 TCGA-A6-5661-01 1 990215 990215 G A AGRN Missense_Mutation p.E1998K 0.23 tolerated(1) benign(0.023) TCGA-A6-5661-01 1 990275 990275 C T AGRN Missense_Mutation p.R2018W 0.34 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 20 11903993 11903993 C A BTBD3 Missense_Mutation p.S416R 0.31 deleterious(0.03) possibly_damaging(0.771) TCGA-A6-5661-01 20 21687040 21687040 C - PAX1 Intron 0.60 TCGA-A6-5661-01 20 24524045 24524045 C T SYNDIG1 Silent p.D104D 0.23 TCGA-A6-5661-01 20 2795930 2795930 C T C20orf141 Missense_Mutation p.R34C 0.33 tolerated_low_confidence(0.18) benign(0) TCGA-A6-5661-01 20 29961023 29961023 C T DEFB118 3'UTR 0.16 TCGA-A6-5661-01 20 29965236 29965236 C T DEFB118 3'Flank 0.13 TCGA-A6-5661-01 20 30457772 30457772 A G DUSP15 Intron 0.42 TCGA-A6-5661-01 20 3052306 3052306 C T OXT Missense_Mutation p.A2V 0.23 tolerated(0.09) benign(0.368) TCGA-A6-5661-01 20 31375143 31375143 G A DNMT3B Silent p.T180T 0.21 TCGA-A6-5661-01 20 31622625 31622625 G T BPIFB6 Missense_Mutation p.R120L 0.30 deleterious(0) possibly_damaging(0.677) TCGA-A6-5661-01 20 31652469 31652469 C T BPIFB3 Intron 0.44 TCGA-A6-5661-01 20 31828117 31828117 G A BPIFA1 Silent p.K169K 0.29 TCGA-A6-5661-01 20 32295360 32295360 G T PXMP4 3'UTR 0.32 TCGA-A6-5661-01 20 3274853 3274853 G A C20orf194 Missense_Mutation p.R724W 0.39 deleterious(0.02) possibly_damaging(0.785) TCGA-A6-5661-01 20 33162933 33162933 A G PIGU Missense_Mutation p.I390T 0.09 tolerated(0.06) possibly_damaging(0.791) TCGA-A6-5661-01 20 33370178 33370178 G A NCOA6 5'UTR 0.17 TCGA-A6-5661-01 20 34087877 34087877 G T CEP250 Splice_Site p.X1260_splice 0.28 TCGA-A6-5661-01 20 34317420 34317420 C T RBM39 Missense_Mutation p.R109Q 0.09 tolerated(0.2) benign(0.105) TCGA-A6-5661-01 20 34775609 34775609 C A EPB41L1 Missense_Mutation p.P266Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 20 36361416 36361416 A - CTNNBL1 Frame_Shift_Del p.R58Gfs*25 0.31 TCGA-A6-5661-01 20 3678615 3678615 C - SIGLEC1 Frame_Shift_Del p.G651Vfs*13 0.25 TCGA-A6-5661-01 20 36932630 36932630 C T BPI Missense_Mutation p.A6V 0.40 deleterious(0) probably_damaging(0.957) TCGA-A6-5661-01 20 36932707 36932707 G A BPI Missense_Mutation p.V32I 0.34 tolerated(0.16) benign(0.001) TCGA-A6-5661-01 20 37169820 37169820 A G RALGAPB Missense_Mutation p.E900G 0.30 deleterious(0) possibly_damaging(0.732) TCGA-A6-5661-01 20 39981287 39981287 A - LPIN3 Frame_Shift_Del p.N470Tfs*10 0.11 TCGA-A6-5661-01 20 40733258 40733258 C T PTPRT Missense_Mutation p.S1164N 0.27 tolerated(0.26) probably_damaging(0.968) TCGA-A6-5661-01 20 42196572 42196572 G A SGK2 Missense_Mutation p.R114H 0.32 tolerated(0.9) benign(0.002) TCGA-A6-5661-01 20 42252635 42252635 C T IFT52 Silent p.F291F 0.25 TCGA-A6-5661-01 20 43093809 43093809 G A C20orf62 Silent p.Y37Y 0.37 TCGA-A6-5661-01 20 43243256 43243256 G A PKIG Missense_Mutation p.R20Q 0.45 tolerated(0.12) benign(0.096) TCGA-A6-5661-01 20 43348557 43348557 C T WISP2 Missense_Mutation p.P27L 0.16 tolerated(0.09) possibly_damaging(0.704) TCGA-A6-5661-01 20 43585085 43585085 G A TOMM34 Nonsense_Mutation p.R57* 0.29 TCGA-A6-5661-01 20 44175993 44175993 C A EPPIN-WFDC6 Nonsense_Mutation p.G2* 0.31 TCGA-A6-5661-01 20 44469563 44469563 C T SNX21 Missense_Mutation p.R245W 0.29 deleterious(0) possibly_damaging(0.614) TCGA-A6-5661-01 20 44520944 44520944 C - CTSA Frame_Shift_Del p.Y133Ifs*5 0.35 TCGA-A6-5661-01 20 44574681 44574681 G A PCIF1 Missense_Mutation p.R452H 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-A6-5661-01 20 44747030 44747030 C T CD40 Silent p.T16T 0.08 TCGA-A6-5661-01 20 44839135 44839135 T C CDH22 Missense_Mutation p.D366G 0.39 deleterious(0) benign(0.005) TCGA-A6-5661-01 20 4707317 4707319 ATC - PRND 3'UTR 0.33 TCGA-A6-5661-01 20 47991403 47991403 C T KCNB1 Missense_Mutation p.V232M 0.30 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 20 49621292 49621292 C T KCNG1 Missense_Mutation p.V276M 0.26 deleterious(0) probably_damaging(0.997) TCGA-A6-5661-01 20 55803447 55803447 C T BMP7 Missense_Mutation p.R150H 0.08 deleterious(0.04) benign(0.024) TCGA-A6-5661-01 20 57289627 57289627 C G NPEPL1 Missense_Mutation p.N438K 0.36 deleterious(0) possibly_damaging(0.776) TCGA-A6-5661-01 20 57767851 57767851 C T ZNF831 Missense_Mutation p.R593W 0.20 deleterious(0.01) possibly_damaging(0.617) TCGA-A6-5661-01 20 58571571 58571571 C T CDH26 Intron 0.34 TCGA-A6-5661-01 20 61452877 61452877 C - COL9A3 Frame_Shift_Del p.G124Efs*5 0.19 TCGA-A6-5661-01 20 61522306 61522306 G A DIDO1 Intron 0.24 TCGA-A6-5661-01 20 61834287 61834287 G A YTHDF1 Silent p.N335N 0.38 TCGA-A6-5661-01 20 62331895 62331895 C T ARFRP1 Intron 0.30 TCGA-A6-5661-01 20 62595235 62595235 G A ZNF512B Silent p.I504I 0.25 TCGA-A6-5661-01 20 644472 644472 C T SCRT2 Missense_Mutation p.R256H 0.41 deleterious(0) probably_damaging(0.98) TCGA-A6-5661-01 20 9496749 9496749 G A LAMP5 Missense_Mutation p.A114T 0.08 tolerated(0.1) possibly_damaging(0.56) TCGA-A6-5661-01 21 19647586 19647586 C T TMPRSS15 Silent p.Q944Q 0.23 TCGA-A6-5661-01 21 30419112 30419112 A G USP16 Missense_Mutation p.K494R 0.08 tolerated(0.16) benign(0.143) TCGA-A6-5661-01 21 32490996 32490996 C T TIAM1 3'UTR 0.25 TCGA-A6-5661-01 21 33067135 33067135 C T SCAF4 Silent p.P409P 0.34 TCGA-A6-5661-01 21 33642818 33642818 C T MIS18A Missense_Mutation p.A142T 0.32 tolerated(0.9) benign(0.002) TCGA-A6-5661-01 21 34115315 34115315 G A PAXBP1 Intron 0.27 TCGA-A6-5661-01 21 35467981 35467981 G A SLC5A3 Missense_Mutation p.V162I 0.08 tolerated(0.99) benign(0.035) TCGA-A6-5661-01 21 37732258 37732258 G A MORC3 Missense_Mutation p.R405H 0.28 deleterious(0.02) benign(0.429) TCGA-A6-5661-01 21 45107744 45107744 A G RRP1B Missense_Mutation p.M497V 0.24 tolerated(0.78) benign(0) TCGA-A6-5661-01 21 46047615 46047615 C - KRTAP10-9 Frame_Shift_Del p.C178Afs*203 0.37 TCGA-A6-5661-01 21 46707684 46707684 T C POFUT2 Missense_Mutation p.I35V 0.29 tolerated(0.69) benign(0) TCGA-A6-5661-01 21 47410291 47410291 G T COL6A1 Splice_Site p.X320_splice 0.36 TCGA-A6-5661-01 21 47421228 47421228 G A COL6A1 Silent p.L628L 0.40 TCGA-A6-5661-01 21 47581900 47581900 G A SPATC1L Missense_Mutation p.A209V 0.35 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 22 16279296 16279296 G T POTEH Silent p.G309G 0.06 TCGA-A6-5661-01 22 17618887 17618887 C A CECR5 3'UTR 0.25 TCGA-A6-5661-01 22 19136593 19136593 G A GSC2 Missense_Mutation p.R177C 0.29 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 22 20781710 20781710 G A SCARF2 Silent p.G561G 0.32 TCGA-A6-5661-01 22 22556549 22556549 T C IGLV11-55 Silent p.S121S 0.18 TCGA-A6-5661-01 22 23214162 23214162 G A IGLV4-3 Missense_Mutation p.A107T 0.29 deleterious(0.04) possibly_damaging(0.895) TCGA-A6-5661-01 22 23627249 23627249 A G BCR Missense_Mutation p.Y756C 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-A6-5661-01 22 24086982 24086982 C T ZNF70 Missense_Mutation p.D116N 0.30 tolerated(0.57) benign(0.001) TCGA-A6-5661-01 22 24107046 24107046 G A C22orf15 Missense_Mutation p.R131Q 0.27 tolerated(0.09) possibly_damaging(0.905) TCGA-A6-5661-01 22 24936790 24936790 T C GUCD1 3'UTR 0.38 TCGA-A6-5661-01 22 25570428 25570428 A T KIAA1671 Missense_Mutation p.K1624M 0.29 deleterious(0.04) probably_damaging(0.988) TCGA-A6-5661-01 22 28193075 28193075 G - MN1 Frame_Shift_Del p.L1153Wfs*25 0.15 TCGA-A6-5661-01 22 28196317 28196317 G A MN1 Missense_Mutation p.A72V 0.24 benign(0.049) TCGA-A6-5661-01 22 29195046 29195048 TCT - XBP1 In_Frame_Del p.E108del 0.39 TCGA-A6-5661-01 22 29656438 29656438 G A RHBDD3 Missense_Mutation p.P287L 0.29 tolerated(0.31) possibly_damaging(0.656) TCGA-A6-5661-01 22 29656597 29656597 G T RHBDD3 Missense_Mutation p.P234H 0.19 tolerated(0.06) benign(0.443) TCGA-A6-5661-01 22 30690064 30690064 C T TBC1D10A Silent p.S254S 0.35 TCGA-A6-5661-01 22 30858116 30858116 C - SEC14L3 Frame_Shift_Del p.G243Afs*3 0.09 TCGA-A6-5661-01 22 31837894 31837894 C T EIF4ENIF1 Missense_Mutation p.R806H 0.33 deleterious(0) possibly_damaging(0.791) TCGA-A6-5661-01 22 32000333 32000333 G A SFI1 Missense_Mutation p.M640I 0.26 tolerated(0.09) benign(0.047) TCGA-A6-5661-01 22 32301983 32301983 C T DEPDC5 Nonsense_Mutation p.Q1475* 0.26 TCGA-A6-5661-01 22 32498055 32498055 G A SLC5A1 Missense_Mutation p.R499H 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-A6-5661-01 22 36684872 36684872 C T MYH9 Silent p.R1557R 0.10 TCGA-A6-5661-01 22 37499256 37499256 C A TMPRSS6 Missense_Mutation p.G77W 0.33 deleterious(0.01) probably_damaging(0.93) TCGA-A6-5661-01 22 37904573 37904573 C T CARD10 Silent p.V342V 0.36 TCGA-A6-5661-01 22 38211463 38211463 C A GCAT Missense_Mutation p.T283N 0.32 deleterious(0) benign(0.102) TCGA-A6-5661-01 22 38211669 38211669 G - GCAT Splice_Site p.X299_splice 0.39 TCGA-A6-5661-01 22 38308429 38308429 C T MICALL1 Silent p.S89S 0.38 TCGA-A6-5661-01 22 38437083 38437083 G A RP5-1039K5.18 5'Flank 0.38 TCGA-A6-5661-01 22 38610607 38610607 G A MAFF Missense_Mutation p.V73M 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-A6-5661-01 22 39994195 39994195 C G CACNA1I Missense_Mutation p.N92K 0.26 deleterious(0) benign(0.047) TCGA-A6-5661-01 22 40662502 40662502 A - TNRC6B Frame_Shift_Del p.N758Tfs*34 0.14 TCGA-A6-5661-01 22 41566556 41566556 G A EP300 Missense_Mutation p.R1478H 0.29 possibly_damaging(0.777) TCGA-A6-5661-01 22 41633384 41633384 C T CHADL Silent p.A564A 0.31 TCGA-A6-5661-01 22 41832890 41832890 G A TOB2 Missense_Mutation p.P154S 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-A6-5661-01 22 42191841 42191841 C T MEI1 Nonsense_Mutation p.Q1257* 0.16 TCGA-A6-5661-01 22 42276894 42276894 C T SREBF2 Missense_Mutation p.R646W 0.31 deleterious(0.03) benign(0.003) TCGA-A6-5661-01 22 43089443 43089443 G A A4GALT Missense_Mutation p.P172L 0.26 tolerated(0.13) probably_damaging(0.991) TCGA-A6-5661-01 22 45960901 45960901 A G FBLN1 Intron 0.35 TCGA-A6-5661-01 22 46751341 46751341 G A TRMU Missense_Mutation p.A292T 0.38 deleterious(0) probably_damaging(0.967) TCGA-A6-5661-01 22 46793716 46793716 G A CELSR1 Silent p.N1852N 0.29 TCGA-A6-5661-01 22 50356458 50356458 G A PIM3 Silent p.E246E 0.43 TCGA-A6-5661-01 22 50436570 50436570 C T IL17REL Missense_Mutation p.R257H 0.10 tolerated(0.14) possibly_damaging(0.656) TCGA-A6-5661-01 22 50530597 50530597 G A MOV10L1 Missense_Mutation p.G89R 0.40 deleterious(0) possibly_damaging(0.799) TCGA-A6-5661-01 22 50660466 50660466 C T TUBGCP6 Silent p.V825V 0.09 TCGA-A6-5661-01 22 50882544 50882544 C T PPP6R2 Silent p.D917D 0.10 TCGA-A6-5661-01 22 50882686 50882686 C T PPP6R2 3'UTR 0.10 TCGA-A6-5661-01 22 50957762 50957762 T C NCAPH2 Intron 0.27 TCGA-A6-5661-01 22 50988844 50988844 C A KLHDC7B 3'UTR 0.32 TCGA-A6-5661-01 2 101031574 101031574 C T CHST10 Splice_Site 0.29 TCGA-A6-5661-01 2 102483020 102483020 G A MAP4K4 Missense_Mutation p.G701R 0.21 tolerated_low_confidence(0.39) probably_damaging(0.98) TCGA-A6-5661-01 2 102501713 102501713 G T MAP4K4 Missense_Mutation p.W1050C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-5661-01 2 105473170 105473170 C T POU3F3 Missense_Mutation p.A401V 0.35 deleterious(0) possibly_damaging(0.468) TCGA-A6-5661-01 2 107040379 107040379 G T RGPD3 Silent p.S1348S 0.12 TCGA-A6-5661-01 2 107450522 107450522 G A ST6GAL2 Missense_Mutation p.R342C 0.07 probably_damaging(1) TCGA-A6-5661-01 2 11273649 11273649 C T C2orf50 Silent p.C63C 0.45 TCGA-A6-5661-01 2 11284073 11284073 C T C2orf50 Missense_Mutation p.P109S 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-A6-5661-01 2 112922676 112922676 C T FBLN7 Missense_Mutation p.R112W 0.36 tolerated(0.07) benign(0.009) TCGA-A6-5661-01 2 113089718 113089718 A - ZC3H6 Frame_Shift_Del p.S1077Vfs*4 0.30 TCGA-A6-5661-01 2 116283473 116283473 G A DPP10 Splice_Site p.X127_splice 0.36 TCGA-A6-5661-01 2 11923968 11923968 A G LPIN1 Silent p.R475R 0.31 TCGA-A6-5661-01 2 122122786 122122786 G A CLASP1 Missense_Mutation p.R1321W 0.43 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 2 125192144 125192144 A C CNTNAP5 Missense_Mutation p.I205L 0.26 deleterious(0.04) benign(0.012) TCGA-A6-5661-01 2 128627061 128627061 C A AMMECR1L Missense_Mutation p.A231S 0.35 deleterious(0) possibly_damaging(0.547) TCGA-A6-5661-01 2 12880828 12880828 G A TRIB2 Missense_Mutation p.V314I 0.31 tolerated(0.33) benign(0.001) TCGA-A6-5661-01 2 128867285 128867285 T C UGGT1 Silent p.D162D 0.22 TCGA-A6-5661-01 2 130910301 130910301 G T SMPD4 Missense_Mutation p.L810M 0.29 deleterious(0) probably_damaging(0.934) TCGA-A6-5661-01 2 131673353 131673353 G A ARHGEF4 5'Flank 0.30 TCGA-A6-5661-01 2 135957902 135957902 T - ZRANB3 3'UTR 0.26 TCGA-A6-5661-01 2 138413084 138413084 G A THSD7B Missense_Mutation p.G1323E 0.34 deleterious(0) unknown(0) TCGA-A6-5661-01 2 141004728 141004728 G A LRP1B Silent p.C4417C 0.21 TCGA-A6-5661-01 2 141032006 141032006 C A LRP1B Missense_Mutation p.D4377Y 0.06 possibly_damaging(0.861) TCGA-A6-5661-01 2 141283461 141283461 C T LRP1B Missense_Mutation p.D2660N 0.33 possibly_damaging(0.831) TCGA-A6-5661-01 2 141643802 141643802 G A LRP1B Missense_Mutation p.T1290I 0.27 possibly_damaging(0.507) TCGA-A6-5661-01 2 141816552 141816552 G A LRP1B Silent p.I436I 0.28 TCGA-A6-5661-01 2 149528828 149528828 G T EPC2 Missense_Mutation p.R531M 0.31 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 2 1507749 1507750 CC T TPO Frame_Shift_Del p.P806Sfs*26 0.17 TCGA-A6-5661-01 2 152322503 152322503 T C RIF1 Missense_Mutation p.S2157P 0.07 tolerated(0.12) benign(0.009) TCGA-A6-5661-01 2 152512773 152512773 G A NEB Missense_Mutation p.A2130V 0.34 possibly_damaging(0.644) TCGA-A6-5661-01 2 152543972 152543972 C A NEB Missense_Mutation p.K866N 0.28 probably_damaging(0.996) TCGA-A6-5661-01 2 152830245 152830245 G T CACNB4 Intron 0.24 TCGA-A6-5661-01 2 158390498 158390498 G A ACVR1C Missense_Mutation p.R472C 0.23 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 2 160801536 160801536 C T PLA2R1 Missense_Mutation p.R1342Q 0.16 tolerated(0.09) benign(0.248) TCGA-A6-5661-01 2 160806223 160806223 T C PLA2R1 Missense_Mutation p.E1202G 0.31 tolerated(0.08) probably_damaging(0.911) TCGA-A6-5661-01 2 162274265 162274265 T G TBR1 Missense_Mutation p.I257M 0.34 deleterious(0.02) benign(0.349) TCGA-A6-5661-01 2 165542530 165542530 A G COBLL1 Missense_Mutation p.S1143P 0.10 tolerated(0.05) benign(0.022) TCGA-A6-5661-01 2 165946790 165946791 - T SCN3A Frame_Shift_Ins p.T1958Nfs*14 0.27 TCGA-A6-5661-01 2 167055312 167055313 - T SCN9A Frame_Shift_Ins p.T1935Nfs*14 0.30 TCGA-A6-5661-01 2 168099807 168099807 C T XIRP2 Silent p.D635D 0.35 TCGA-A6-5661-01 2 171570037 171570037 G A LINC01124 3'UTR 0.45 TCGA-A6-5661-01 2 171867906 171867906 C A TLK1 Missense_Mutation p.G465C 0.22 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 2 172379076 172379076 G T CYBRD1 Missense_Mutation p.W7C 0.22 tolerated(0.18) benign(0.002) TCGA-A6-5661-01 2 172669908 172669908 T - SLC25A12 Frame_Shift_Del p.N371Tfs*22 0.28 TCGA-A6-5661-01 2 172965890 172965890 C T DLX2 Intron 0.50 TCGA-A6-5661-01 2 174228617 174228617 C T CDCA7 Silent p.S231S 0.37 TCGA-A6-5661-01 2 176982035 176982035 C T HOXD10 Silent p.Y158Y 0.28 TCGA-A6-5661-01 2 179424988 179424988 C T TTN Missense_Mutation p.R28624H 0.30 TCGA-A6-5661-01 2 179442153 179442153 C A TTN Missense_Mutation p.S22970I 0.37 TCGA-A6-5661-01 2 179484754 179484754 C - TTN Frame_Shift_Del p.V15464* 0.24 TCGA-A6-5661-01 2 179500891 179500891 C T TTN Missense_Mutation p.E13803K 0.26 TCGA-A6-5661-01 2 179575619 179575619 C T TTN Missense_Mutation p.R9402H 0.31 TCGA-A6-5661-01 2 179592036 179592036 G A TTN Nonsense_Mutation p.R6686* 0.10 TCGA-A6-5661-01 2 179597383 179597383 G T TTN Missense_Mutation p.L5469M 0.37 TCGA-A6-5661-01 2 179610733 179610733 C T TTN Intron 0.31 TCGA-A6-5661-01 2 17998218 17998218 C T MSGN1 Missense_Mutation p.H145Y 0.40 deleterious(0) probably_damaging(0.987) TCGA-A6-5661-01 2 182542645 182542645 C T NEUROD1 Missense_Mutation p.G315R 0.34 deleterious(0.02) benign(0.232) TCGA-A6-5661-01 2 189899825 189899826 - A COL5A2 Frame_Shift_Ins p.L1390Ffs*17 0.26 TCGA-A6-5661-01 2 191843728 191843728 C A STAT1 Splice_Site p.X576_splice 0.27 TCGA-A6-5661-01 2 192711323 192711323 G C SDPR Missense_Mutation p.T110R 0.12 deleterious(0) probably_damaging(0.985) TCGA-A6-5661-01 2 197653994 197653994 C T GTF3C3 Missense_Mutation p.R276H 0.33 tolerated(0.1) benign(0.133) TCGA-A6-5661-01 2 202488929 202488929 A - TMEM237 3'UTR 0.27 TCGA-A6-5661-01 2 203241980 203241980 C - BMPR2 5'UTR 0.56 TCGA-A6-5661-01 2 203397312 203397312 G A BMPR2 Missense_Mutation p.G378D 0.28 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 2 204193282 204193282 C G ABI2 Silent p.G15G 0.32 TCGA-A6-5661-01 2 204267312 204267312 G A ABI2 Silent p.Q282Q 0.32 TCGA-A6-5661-01 2 205986366 205986366 C T PARD3B Silent p.H286H 0.26 TCGA-A6-5661-01 2 210742707 210742707 C T UNC80 Silent p.C1292C 0.34 TCGA-A6-5661-01 2 216296647 216296647 G A FN1 Silent p.D152D 0.11 TCGA-A6-5661-01 2 217124129 217124129 G T MARCH4 Missense_Mutation p.T380N 0.32 tolerated(0.2) probably_damaging(0.95) TCGA-A6-5661-01 2 218745672 218745672 G A TNS1 Missense_Mutation p.R335C 0.26 deleterious(0) probably_damaging(0.973) TCGA-A6-5661-01 2 219603795 219603795 G A TTLL4 Missense_Mutation p.A466T 0.32 tolerated(0.27) benign(0.024) TCGA-A6-5661-01 2 220044462 220044462 C T FAM134A Silent p.S132S 0.34 TCGA-A6-5661-01 2 224856554 224856554 C T SERPINE2 Silent p.V229V 0.39 TCGA-A6-5661-01 2 228221915 228221915 A G MFF 3'UTR 0.29 TCGA-A6-5661-01 2 233681731 233681731 C T GIGYF2 Nonsense_Mutation p.R808* 0.32 TCGA-A6-5661-01 2 234372820 234372820 C T DGKD Missense_Mutation p.P1066L 0.38 tolerated(0.11) benign(0.002) TCGA-A6-5661-01 2 234749797 234749797 G A HJURP Silent p.H543H 0.29 TCGA-A6-5661-01 2 234775754 234775754 G A MSL3P1 RNA 0.27 TCGA-A6-5661-01 2 235950717 235950717 G T SH3BP4 Missense_Mutation p.G435V 0.25 tolerated(0.14) probably_damaging(0.938) TCGA-A6-5661-01 2 27306682 27306682 G A EMILIN1 Missense_Mutation p.R748H 0.35 probably_damaging(0.964) TCGA-A6-5661-01 2 27717458 27717458 G A FNDC4 Missense_Mutation p.T30M 0.39 tolerated(0.06) probably_damaging(0.93) TCGA-A6-5661-01 2 27880452 27880452 G A SUPT7L Silent p.H168H 0.19 TCGA-A6-5661-01 2 27887218 27887218 G A SLC4A1AP Missense_Mutation p.C200Y 0.18 tolerated(1) possibly_damaging(0.53) TCGA-A6-5661-01 2 27898417 27898417 C A SLC4A1AP Missense_Mutation p.A455D 0.26 deleterious(0.01) benign(0.017) TCGA-A6-5661-01 2 28820885 28820885 G A PLB1 Missense_Mutation p.G779S 0.52 tolerated(0.34) benign(0.086) TCGA-A6-5661-01 2 29011574 29011575 - G PPP1CB Frame_Shift_Ins p.E217Rfs*3 0.25 TCGA-A6-5661-01 2 33525556 33525556 G A LTBP1 Missense_Mutation p.G1092R 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-A6-5661-01 2 37113865 37113865 C - STRN Frame_Shift_Del p.V346* 0.21 TCGA-A6-5661-01 2 37323486 37323486 A T GPATCH11 3'UTR 0.37 TCGA-A6-5661-01 2 37502910 37502910 C A PRKD3 Missense_Mutation p.K458N 0.33 deleterious(0) possibly_damaging(0.755) TCGA-A6-5661-01 2 38805108 38805108 C T HNRNPLL Intron 0.31 TCGA-A6-5661-01 2 39241100 39241100 T G SOS1 Missense_Mutation p.E657D 0.11 tolerated(0.41) benign(0.003) TCGA-A6-5661-01 2 39664049 39664049 T C MAP4K3 Missense_Mutation p.Y27C 0.53 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 2 44022010 44022010 C T DYNC2LI1 Intron 0.37 TCGA-A6-5661-01 2 48035198 48035198 A - FBXO11 3'UTR 0.27 TCGA-A6-5661-01 2 48060189 48060192 TGTC - FBXO11 Frame_Shift_Del p.D318Kfs*3 0.47 TCGA-A6-5661-01 2 5838508 5838508 G A SOX11 3'UTR 0.10 TCGA-A6-5661-01 2 61144037 61144037 T C REL Silent p.I140I 0.09 TCGA-A6-5661-01 2 64819163 64819163 C T AFTPH Silent p.D935D 0.28 TCGA-A6-5661-01 2 69556453 69556455 ATA - GFPT1 In_Frame_Del p.Y567del 0.33 TCGA-A6-5661-01 2 70162560 70162560 C T MXD1 Missense_Mutation p.T94M 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-A6-5661-01 2 7023639 7023639 C T RSAD2 Missense_Mutation p.R162W 0.27 deleterious(0.02) benign(0.083) TCGA-A6-5661-01 2 70475537 70475538 AG - TIA1 Frame_Shift_Del p.L9Ifs*4 0.42 TCGA-A6-5661-01 2 71797059 71797059 G A DYSF Missense_Mutation p.D992N 0.29 tolerated(0.13) probably_damaging(0.992) TCGA-A6-5661-01 2 71797751 71797751 C - DYSF Frame_Shift_Del p.P1038Rfs*37 0.41 TCGA-A6-5661-01 2 73455660 73455660 C A PRADC1 Missense_Mutation p.W163C 0.36 tolerated(0.11) possibly_damaging(0.662) TCGA-A6-5661-01 2 74492355 74492355 G A SLC4A5 Silent p.G146G 0.40 TCGA-A6-5661-01 2 74648941 74648941 C T WDR54 Intron 0.16 TCGA-A6-5661-01 2 74902022 74902022 G A SEMA4F Missense_Mutation p.A337T 0.40 tolerated(0.07) possibly_damaging(0.601) TCGA-A6-5661-01 2 85255147 85255147 C A KCMF1 Missense_Mutation p.P51Q 0.28 deleterious(0) possibly_damaging(0.714) TCGA-A6-5661-01 2 85890792 85890792 C A SFTPB Missense_Mutation p.G296V 0.43 tolerated(0.08) benign(0.196) TCGA-A6-5661-01 2 86260847 86260847 G A POLR1A Silent p.N1366N 0.13 TCGA-A6-5661-01 2 88422691 88422692 - A FABP1 Intron 0.18 TCGA-A6-5661-01 2 8936925 8936925 A G KIDINS220 Silent p.G358G 0.29 TCGA-A6-5661-01 2 9437520 9437520 G A ASAP2 Silent p.A97A 0.15 TCGA-A6-5661-01 2 9484763 9484763 G A ASAP2 Missense_Mutation p.G318R 0.36 deleterious(0.01) probably_damaging(1) TCGA-A6-5661-01 2 97356264 97356264 C A FER1L5 RNA 0.16 TCGA-A6-5661-01 2 97543745 97543745 C T FAM178B Missense_Mutation p.R630H 0.42 deleterious(0.04) benign(0.086) TCGA-A6-5661-01 2 99170856 99170856 G T INPP4A Missense_Mutation p.Q495H 0.17 tolerated(0.11) benign(0.049) TCGA-A6-5661-01 3 101535731 101535731 C T NXPE3 Missense_Mutation p.R339C 0.29 deleterious(0.01) possibly_damaging(0.724) TCGA-A6-5661-01 3 107769438 107769438 C T CD47 Silent p.E307E 0.13 TCGA-A6-5661-01 3 109128956 109128956 T G RP11-702L6.4 RNA 0.35 TCGA-A6-5661-01 3 118866401 118866401 T C C3orf30 Silent p.S455S 0.35 TCGA-A6-5661-01 3 119121060 119121060 C T ARHGAP31 Silent p.S487S 0.30 TCGA-A6-5661-01 3 119133425 119133425 G T ARHGAP31 Missense_Mutation p.Q883H 0.30 tolerated(0.22) probably_damaging(0.998) TCGA-A6-5661-01 3 119379073 119379073 C T POPDC2 Silent p.L66L 0.21 TCGA-A6-5661-01 3 119900114 119900115 - C GPR156 Frame_Shift_Ins p.V264Gfs*56 0.30 TCGA-A6-5661-01 3 122632415 122632415 C A SEMA5B Missense_Mutation p.C803F 0.46 deleterious(0) possibly_damaging(0.517) TCGA-A6-5661-01 3 124418766 124418766 G A AC080008.1 5'Flank 0.10 TCGA-A6-5661-01 3 125695868 125695868 C A ROPN1B Missense_Mutation p.R86S 0.19 tolerated(1) benign(0.033) TCGA-A6-5661-01 3 126070728 126070728 C T KLF15 Silent p.T346T 0.33 TCGA-A6-5661-01 3 126142192 126142192 G A CCDC37 Silent p.T369T 0.38 TCGA-A6-5661-01 3 12785410 12785410 T A TMEM40 Missense_Mutation p.N97I 0.16 tolerated_low_confidence(0.16) benign(0.036) TCGA-A6-5661-01 3 128780665 128780665 C T GP9 Missense_Mutation p.A28V 0.31 tolerated(0.06) possibly_damaging(0.696) TCGA-A6-5661-01 3 129226524 129226524 G T IFT122 Missense_Mutation p.K986N 0.30 tolerated(0.27) benign(0.015) TCGA-A6-5661-01 3 129285430 129285430 G T PLXND1 Silent p.T1377T 0.28 TCGA-A6-5661-01 3 129293197 129293197 G A PLXND1 Silent p.P889P 0.15 TCGA-A6-5661-01 3 130098365 130098365 C A COL6A5 Missense_Mutation p.L258I 0.32 deleterious(0.04) probably_damaging(1) TCGA-A6-5661-01 3 130107545 130107545 G A COL6A5 Missense_Mutation p.A662T 0.28 tolerated(0.11) benign(0.146) TCGA-A6-5661-01 3 130285587 130285587 G A COL6A6 Missense_Mutation p.D442N 0.20 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 3 132198090 132198090 G A DNAJC13 Missense_Mutation p.R910Q 0.10 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 3 13438890 13438890 G - NUP210 Frame_Shift_Del p.L135Wfs*3 0.38 TCGA-A6-5661-01 3 136068010 136068010 T - STAG1 Frame_Shift_Del p.K1087Nfs*3 0.32 TCGA-A6-5661-01 3 137907242 137907243 - T ARMC8 Intron 0.27 TCGA-A6-5661-01 3 139062964 139062964 G A MRPS22 Nonsense_Mutation p.W32* 0.37 TCGA-A6-5661-01 3 141163890 141163890 G A ZBTB38 Missense_Mutation p.S887N 0.35 tolerated(0.09) benign(0.006) TCGA-A6-5661-01 3 141326548 141326548 A - RASA2 Frame_Shift_Del p.N656Tfs*21 0.11 TCGA-A6-5661-01 3 147114033 147114033 G A ZIC4 Silent p.Y148Y 0.13 TCGA-A6-5661-01 3 14712639 14712639 G A CCDC174 Missense_Mutation p.A448T 0.47 tolerated(0.45) possibly_damaging(0.811) TCGA-A6-5661-01 3 148925340 148925340 T - CP Frame_Shift_Del p.K282Nfs*23 0.25 TCGA-A6-5661-01 3 150264430 150264430 G A SERP1 5'UTR 0.44 TCGA-A6-5661-01 3 15094885 15094885 A G MRPS25 Splice_Site p.X110_splice 0.22 TCGA-A6-5661-01 3 153220402 153220402 T - C3orf79 3'UTR 0.29 TCGA-A6-5661-01 3 154147111 154147111 G - GPR149 Frame_Shift_Del p.G99Vfs*12 0.27 TCGA-A6-5661-01 3 158322983 158322983 A - MLF1 Frame_Shift_Del p.K299Nfs*3 0.26 TCGA-A6-5661-01 3 168833928 168833931 CTGA - MECOM Frame_Shift_Del p.S454Rfs*46 0.36 TCGA-A6-5661-01 3 169550923 169550923 A G LRRIQ4 Missense_Mutation p.I494M 0.36 deleterious(0.01) possibly_damaging(0.504) TCGA-A6-5661-01 3 183493773 183493773 C A YEATS2 Silent p.G813G 0.38 TCGA-A6-5661-01 3 184971693 184971693 A G EHHADH Intron 0.23 TCGA-A6-5661-01 3 185407397 185407397 G A IGF2BP2 Silent p.S141S 0.39 TCGA-A6-5661-01 3 186358279 186358279 C A FETUB Nonsense_Mutation p.C10* 0.29 TCGA-A6-5661-01 3 186395024 186395024 C A HRG Silent p.P310P 0.34 TCGA-A6-5661-01 3 186954001 186954001 T C MASP1 Missense_Mutation p.D553G 0.11 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 3 189681856 189681856 A G LEPREL1 Missense_Mutation p.I642T 0.30 deleterious(0) benign(0.155) TCGA-A6-5661-01 3 193061774 193061774 C T ATP13A5 Silent p.L295L 0.25 TCGA-A6-5661-01 3 193071971 193071971 C A ATP13A5 Missense_Mutation p.G184V 0.37 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 3 194140681 194140682 - A ATP13A3 Frame_Shift_Ins p.S1110Ffs*21 0.23 TCGA-A6-5661-01 3 194790674 194790674 G A XXYLT1 Silent p.L318L 0.25 TCGA-A6-5661-01 3 196387193 196387193 C T NRROS Missense_Mutation p.R227W 0.29 deleterious(0) benign(0.28) TCGA-A6-5661-01 3 197432001 197432001 G A KIAA0226 Missense_Mutation p.R89W 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 3 24185091 24185091 C T THRB Silent p.E213E 0.42 TCGA-A6-5661-01 3 25646313 25646314 - A TOP2B Frame_Shift_Ins p.S1471Ffs*11 0.15 TCGA-A6-5661-01 3 27332211 27332211 A G NEK10 Missense_Mutation p.M547T 0.45 deleterious(0) benign(0.438) TCGA-A6-5661-01 3 27346344 27346344 G T NEK10 Missense_Mutation p.L308I 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-A6-5661-01 3 30664757 30664757 T C TGFBR2 Missense_Mutation p.L54P 0.39 deleterious_low_confidence(0.02) benign(0.043) TCGA-A6-5661-01 3 3067806 3067806 C - CNTN4 Frame_Shift_Del p.P504Lfs*18 0.37 TCGA-A6-5661-01 3 3215788 3215788 C T CRBN Missense_Mutation p.R111Q 0.28 tolerated(0.18) benign(0.364) TCGA-A6-5661-01 3 35785981 35785981 G - ARPP21 Intron 0.16 TCGA-A6-5661-01 3 38022292 38022294 CTT - CTDSPL In_Frame_Del p.F257del 0.45 TCGA-A6-5661-01 3 38414208 38414208 C A XYLB Silent p.A276A 0.29 TCGA-A6-5661-01 3 38739290 38739290 G A SCN10A Silent p.F1807F 0.31 TCGA-A6-5661-01 3 39225771 39225773 CTT - XIRP1 In_Frame_Del p.K1722del 0.49 TCGA-A6-5661-01 3 405135 405135 T C CHL1 Intron 0.33 TCGA-A6-5661-01 3 41274897 41274897 T C CTNNB1 Missense_Mutation p.W383R 0.43 deleterious(0) probably_damaging(0.923) TCGA-A6-5661-01 3 42727843 42727843 C T KLHL40 Missense_Mutation p.R245C 0.41 deleterious(0.01) benign(0.022) TCGA-A6-5661-01 3 4354905 4354905 G A SETMAR Silent p.P160P 0.22 TCGA-A6-5661-01 3 44489114 44489114 A T ZNF445 Nonsense_Mutation p.C683* 0.44 TCGA-A6-5661-01 3 44692631 44692631 A G ZNF35 Silent p.E24E 0.21 TCGA-A6-5661-01 3 45000729 45000729 A G ZDHHC3 Missense_Mutation p.L67P 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 3 47041738 47041738 C T NBEAL2 Silent p.A1383A 0.09 TCGA-A6-5661-01 3 47165213 47165213 T - SETD2 Frame_Shift_Del p.T305Qfs*35 0.09 TCGA-A6-5661-01 3 47446243 47446243 C T PTPN23 Silent p.G87G 0.36 TCGA-A6-5661-01 3 47468656 47468656 T C SCAP Missense_Mutation p.Y243C 0.26 deleterious(0) probably_damaging(0.91) TCGA-A6-5661-01 3 48683081 48683081 C T CELSR3 Missense_Mutation p.R2531K 0.36 tolerated(0.22) benign(0.206) TCGA-A6-5661-01 3 48689337 48689337 G A CELSR3 Nonsense_Mutation p.Q1966* 0.19 TCGA-A6-5661-01 3 48716825 48716825 G A NCKIPSD Missense_Mutation p.P519S 0.31 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 3 48719851 48719851 C T NCKIPSD Missense_Mutation p.R139Q 0.24 tolerated(0.06) benign(0.004) TCGA-A6-5661-01 3 49016933 49016933 T C ARIH2 Missense_Mutation p.L327P 0.29 deleterious(0) probably_damaging(0.993) TCGA-A6-5661-01 3 49149244 49149244 T C USP19 Missense_Mutation p.Y967C 0.38 deleterious(0) probably_damaging(0.943) TCGA-A6-5661-01 3 49548233 49548233 C T DAG1 Missense_Mutation p.S89F 0.27 tolerated(0.22) possibly_damaging(0.464) TCGA-A6-5661-01 3 49847842 49847842 G A UBA7 Missense_Mutation p.A496V 0.26 deleterious(0.01) probably_damaging(1) TCGA-A6-5661-01 3 49879336 49879336 C T TRAIP Silent p.V180V 0.41 TCGA-A6-5661-01 3 50677856 50677856 C T MAPKAPK3 Silent p.G93G 0.15 TCGA-A6-5661-01 3 51737897 51737897 C T TEX264 Silent p.S269S 0.35 TCGA-A6-5661-01 3 51749756 51749756 G A GRM2 Missense_Mutation p.R656H 0.40 deleterious(0) probably_damaging(0.992) TCGA-A6-5661-01 3 52179895 52179895 C T POC1A Missense_Mutation p.V216M 0.34 deleterious(0) benign(0.433) TCGA-A6-5661-01 3 5229575 5229575 C T EDEM1 Missense_Mutation p.P29S 0.22 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-A6-5661-01 3 52380622 52380622 C T DNAH1 Silent p.R597R 0.36 TCGA-A6-5661-01 3 52391629 52391629 G T DNAH1 Splice_Site p.X1287_splice 0.33 TCGA-A6-5661-01 3 52554000 52554000 G T STAB1 Missense_Mutation p.R1759M 0.30 tolerated(0.05) possibly_damaging(0.886) TCGA-A6-5661-01 3 52621519 52621519 T - PBRM1 Intron 0.25 TCGA-A6-5661-01 3 52643943 52643943 T - PBRM1 Frame_Shift_Del p.K651Nfs*5 0.11 TCGA-A6-5661-01 3 52728488 52728488 A - GNL3 3'UTR 0.29 TCGA-A6-5661-01 3 52833018 52833018 C T ITIH3 Missense_Mutation p.R234C 0.33 deleterious(0) possibly_damaging(0.899) TCGA-A6-5661-01 3 52850920 52850920 C T ITIH4 Silent p.T817T 0.29 TCGA-A6-5661-01 3 53222845 53222845 T C PRKCD Missense_Mutation p.C509R 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-A6-5661-01 3 56651323 56651323 G A CCDC66 Missense_Mutation p.R676Q 0.05 tolerated(0.49) benign(0.313) TCGA-A6-5661-01 3 56657581 56657581 G A FAM208A 3'UTR 0.26 TCGA-A6-5661-01 3 57994510 57994510 C A FLNB Silent p.R73R 0.09 TCGA-A6-5661-01 3 58111330 58111331 AT - FLNB Frame_Shift_Del p.Y1308* 0.28 TCGA-A6-5661-01 3 64085171 64085171 G A PRICKLE2 Silent p.N697N 0.34 TCGA-A6-5661-01 3 68466480 68466480 C T FAM19A1 Missense_Mutation p.R57C 0.33 deleterious(0) possibly_damaging(0.88) TCGA-A6-5661-01 3 6903449 6903449 C T GRM7 Missense_Mutation p.A125V 0.31 deleterious(0) probably_damaging(0.909) TCGA-A6-5661-01 3 71064750 71064750 G A FOXP1 Silent p.C310C 0.30 TCGA-A6-5661-01 3 73432699 73432699 C T PDZRN3 Silent p.Q1006Q 0.27 TCGA-A6-5661-01 3 78737892 78737892 T C ROBO1 Missense_Mutation p.D359G 0.23 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 3 79638981 79638981 A T ROBO1 Silent p.L27L 0.21 TCGA-A6-5661-01 3 96533537 96533537 G C EPHA6 Missense_Mutation p.A24P 0.27 tolerated_low_confidence(0.3) unknown(0) TCGA-A6-5661-01 3 96706413 96706413 C T EPHA6 Silent p.H230H 0.09 TCGA-A6-5661-01 3 98002046 98002047 - T OR5H2 Frame_Shift_Ins p.S108Ffs*19 0.13 TCGA-A6-5661-01 3 9959305 9959305 G A IL17RC Silent p.E102E 0.24 TCGA-A6-5661-01 4 100521877 100521877 T G MTTP Missense_Mutation p.L408R 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 4 10446493 10446493 G A ZNF518B Missense_Mutation p.A487V 0.29 tolerated(0.32) benign(0.039) TCGA-A6-5661-01 4 106159325 106159326 - A TET2 Intron 0.21 TCGA-A6-5661-01 4 106861795 106861795 T A NPNT Splice_Site p.X285_splice 0.06 TCGA-A6-5661-01 4 110415946 110415946 A G SEC24B Silent p.T474T 0.30 TCGA-A6-5661-01 4 110610435 110610435 C T CASP6 3'UTR 0.28 TCGA-A6-5661-01 4 111397583 111397584 GA - ENPEP Frame_Shift_Del p.E7Gfs*3 0.36 TCGA-A6-5661-01 4 114239707 114239707 C T ANK2 Missense_Mutation p.S944F 0.10 possibly_damaging(0.888) TCGA-A6-5661-01 4 114274588 114274588 A - ANK2 Frame_Shift_Del p.A1607Hfs*3 0.28 TCGA-A6-5661-01 4 114274616 114274616 T A ANK2 Nonsense_Mutation p.Y1614* 0.12 TCGA-A6-5661-01 4 114274965 114274965 G A ANK2 Missense_Mutation p.G1731S 0.16 benign(0.042) TCGA-A6-5661-01 4 115597096 115597096 T C UGT8 Silent p.A426A 0.31 TCGA-A6-5661-01 4 1165660 1165660 G A SPON2 Missense_Mutation p.A67V 0.15 deleterious(0.02) possibly_damaging(0.706) TCGA-A6-5661-01 4 118005304 118005304 A - TRAM1L1 3'UTR 0.26 TCGA-A6-5661-01 4 119951487 119951487 C A SYNPO2 Missense_Mutation p.S519R 0.33 tolerated(0.55) benign(0.005) TCGA-A6-5661-01 4 121737617 121737617 C T PRDM5 Missense_Mutation p.V286I 0.25 tolerated(0.59) benign(0.033) TCGA-A6-5661-01 4 122301756 122301756 C T QRFPR Missense_Mutation p.R16Q 0.28 tolerated(0.43) benign(0.005) TCGA-A6-5661-01 4 123814373 123814373 T C NUDT6 Silent p.T187T 0.31 TCGA-A6-5661-01 4 126238914 126238914 G A FAT4 Missense_Mutation p.A450T 0.28 benign(0.036) TCGA-A6-5661-01 4 129783315 129783315 C T JADE1 Missense_Mutation p.R480W 0.34 deleterious(0.01) possibly_damaging(0.676) TCGA-A6-5661-01 4 140375548 140375548 G T RAB33B Missense_Mutation p.G67W 0.15 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 4 146686150 146686150 C T ZNF827 Missense_Mutation p.G1074S 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-5661-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.07 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 4 154555360 154555360 G A KIAA0922 Missense_Mutation p.A1449T 0.37 tolerated(0.28) benign(0.015) TCGA-A6-5661-01 4 156651349 156651349 C T GUCY1A3 Missense_Mutation p.A680V 0.11 tolerated_low_confidence(0.17) benign(0.271) TCGA-A6-5661-01 4 156784694 156784694 G A ASIC5 Missense_Mutation p.L85F 0.07 tolerated(0.36) benign(0.005) TCGA-A6-5661-01 4 15689376 15689377 - T FAM200B Frame_Shift_Ins p.L261Ffs*25 0.27 TCGA-A6-5661-01 4 15733549 15733549 A C BST1 3'UTR 0.38 TCGA-A6-5661-01 4 158255237 158255237 C T GRIA2 Missense_Mutation p.L411F 0.26 tolerated(0.33) possibly_damaging(0.462) TCGA-A6-5661-01 4 162306896 162306896 T - FSTL5 3'UTR 0.23 TCGA-A6-5661-01 4 164273053 164273053 T - NPY5R 3'UTR 0.32 TCGA-A6-5661-01 4 165961383 165961383 T A TRIM60 Nonsense_Mutation p.C53* 0.33 TCGA-A6-5661-01 4 170076639 170076639 A G SH3RF1 Missense_Mutation p.Y253H 0.32 deleterious(0) probably_damaging(0.997) TCGA-A6-5661-01 4 17488629 17488630 - A QDPR 3'UTR 0.19 TCGA-A6-5661-01 4 175649804 175649804 G A GLRA3 Missense_Mutation p.R105C 0.26 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 4 175897280 175897280 A G ADAM29 Missense_Mutation p.I202V 0.09 tolerated(0.11) benign(0.006) TCGA-A6-5661-01 4 183664529 183664529 C T TENM3 Missense_Mutation p.R1196W 0.30 deleterious(0) possibly_damaging(0.876) TCGA-A6-5661-01 4 187175764 187175764 C T KLKB1 Missense_Mutation p.R446C 0.32 deleterious(0) probably_damaging(0.92) TCGA-A6-5661-01 4 187521384 187521384 C T FAT1 Missense_Mutation p.R3924H 0.30 possibly_damaging(0.836) TCGA-A6-5661-01 4 1920350 1920350 G T WHSC1 Missense_Mutation p.E470D 0.32 tolerated(0.05) possibly_damaging(0.9) TCGA-A6-5661-01 4 22425862 22425862 C T GPR125 Silent p.Q519Q 0.35 TCGA-A6-5661-01 4 2906788 2906791 TCTC - ADD1 Frame_Shift_Del p.L488Rfs*35 0.38 TCGA-A6-5661-01 4 2930260 2930260 G A ADD1 3'UTR 0.10 TCGA-A6-5661-01 4 30724110 30724110 C T PCDH7 Missense_Mutation p.R356W 0.32 deleterious(0) probably_damaging(0.985) TCGA-A6-5661-01 4 30724697 30724697 C T PCDH7 Silent p.G551G 0.20 TCGA-A6-5661-01 4 37445746 37445746 G - KIAA1239 Frame_Shift_Del p.E713Rfs*7 0.29 TCGA-A6-5661-01 4 37447558 37447558 A - KIAA1239 Frame_Shift_Del p.K1317Nfs*43 0.27 TCGA-A6-5661-01 4 38829238 38829238 G A TLR6 Silent p.C619C 0.33 TCGA-A6-5661-01 4 43032625 43032625 T - GRXCR1 3'UTR 0.17 TCGA-A6-5661-01 4 44696438 44696438 C T GUF1 Silent p.Y541Y 0.30 TCGA-A6-5661-01 4 47938970 47938970 C T CNGA1 Missense_Mutation p.R583Q 0.29 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 4 52861613 52861613 C A LRRC66 Missense_Mutation p.Q525H 0.26 tolerated(0.15) benign(0.035) TCGA-A6-5661-01 4 52862083 52862084 - T LRRC66 Frame_Shift_Ins p.E369Rfs*34 0.21 TCGA-A6-5661-01 4 56325421 56325422 - T CLOCK Frame_Shift_Ins p.N189Kfs*23 0.23 TCGA-A6-5661-01 4 6325234 6325234 T C PPP2R2C Missense_Mutation p.E380G 0.23 deleterious(0.03) possibly_damaging(0.711) TCGA-A6-5661-01 4 71275587 71275587 C A PROL1 Missense_Mutation p.P181H 0.18 deleterious_low_confidence(0) unknown(0) TCGA-A6-5661-01 4 72319255 72319255 T - SLC4A4 Frame_Shift_Del p.F457Lfs*9 0.31 TCGA-A6-5661-01 4 73956601 73956601 G - ANKRD17 Frame_Shift_Del p.L2249Yfs*84 0.27 TCGA-A6-5661-01 4 76570618 76570618 C T G3BP2 Missense_Mutation p.R482H 0.31 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-A6-5661-01 4 77660164 77660164 C T SHROOM3 Missense_Mutation p.R280W 0.17 deleterious(0.05) possibly_damaging(0.826) TCGA-A6-5661-01 4 7844912 7844912 C T AFAP1 Missense_Mutation p.G167D 0.10 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 4 79437141 79437141 G - FRAS1 Frame_Shift_Del p.G3456Afs*3 0.27 TCGA-A6-5661-01 4 80905081 80905081 T A ANTXR2 Missense_Mutation p.D377V 0.07 deleterious(0) probably_damaging(0.994) TCGA-A6-5661-01 4 818370 818370 G A CPLX1 5'UTR 0.11 TCGA-A6-5661-01 4 85416912 85416912 C A NKX6-1 Missense_Mutation p.E252D 0.32 deleterious(0) unknown(0) TCGA-A6-5661-01 4 87022255 87022255 C T MAPK10 Missense_Mutation p.R227H 0.34 deleterious(0.01) benign(0.436) TCGA-A6-5661-01 4 87720345 87720345 G A PTPN13 Missense_Mutation p.D2170N 0.33 tolerated(0.57) benign(0.012) TCGA-A6-5661-01 4 88046197 88046200 AGAA - AFF1 Frame_Shift_Del p.R827Tfs*98 0.12 TCGA-A6-5661-01 4 88536989 88536989 G A DSPP Missense_Mutation p.D1059N 0.32 unknown(0) TCGA-A6-5661-01 4 93225875 93225875 C T GRID2 Missense_Mutation p.A23V 0.39 deleterious(0.01) benign(0.298) TCGA-A6-5661-01 4 941509 941509 G A TMEM175 5'UTR 0.29 TCGA-A6-5661-01 4 95229809 95229809 C T HPGDS Nonsense_Mutation p.W104* 0.25 TCGA-A6-5661-01 4 954313 954313 G A DGKQ 3'UTR 0.35 TCGA-A6-5661-01 4 9785421 9785421 G T DRD5 3'UTR 0.11 TCGA-A6-5661-01 5 10261684 10261684 G A CCT5 Missense_Mutation p.A336T 0.24 tolerated(0.07) possibly_damaging(0.636) TCGA-A6-5661-01 5 112870066 112870066 G T YTHDC2 Nonsense_Mutation p.G303* 0.30 TCGA-A6-5661-01 5 115469816 115469816 G A COMMD10 Missense_Mutation p.A151T 0.31 tolerated(0.16) benign(0.1) TCGA-A6-5661-01 5 115783121 115783121 T C SEMA6A Missense_Mutation p.T761A 0.29 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 5 118502316 118502316 A - DMXL1 Frame_Shift_Del p.N1661Tfs*4 0.32 TCGA-A6-5661-01 5 1213598 1213598 G A SLC6A19 Silent p.T228T 0.37 TCGA-A6-5661-01 5 122515923 122515923 C T PRDM6 Missense_Mutation p.R527W 0.08 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 5 125695930 125695930 C T GRAMD3 5'UTR 0.33 TCGA-A6-5661-01 5 125904009 125904009 G T ALDH7A1 Silent p.S271S 0.28 TCGA-A6-5661-01 5 132151857 132151857 A T SOWAHA 3'UTR 0.34 TCGA-A6-5661-01 5 132158460 132158460 C T SHROOM1 3'UTR 0.25 TCGA-A6-5661-01 5 133655175 133655175 A G CDKL3 Silent p.P222P 0.39 TCGA-A6-5661-01 5 134056708 134056708 A - SEC24A Frame_Shift_Del p.N999Ifs*11 0.36 TCGA-A6-5661-01 5 134296467 134296467 T - PCBD2 Intron 0.24 TCGA-A6-5661-01 5 136997639 136997639 G A KLHL3 Nonsense_Mutation p.R240* 0.25 TCGA-A6-5661-01 5 13766272 13766272 T C DNAH5 Missense_Mutation p.D3305G 0.14 possibly_damaging(0.822) TCGA-A6-5661-01 5 137726810 137726810 G A KDM3B Missense_Mutation p.A497T 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-A6-5661-01 5 137780977 137780977 C T REEP2 Missense_Mutation p.R158W 0.18 deleterious(0.01) possibly_damaging(0.676) TCGA-A6-5661-01 5 139495769 139495769 C T PURA 3'UTR 0.31 TCGA-A6-5661-01 5 140174933 140174933 C T PCDHA2 Silent p.D128D 0.31 TCGA-A6-5661-01 5 140176511 140176511 C T PCDHA2 Silent p.H654H 0.34 TCGA-A6-5661-01 5 140263779 140263779 G A PCDHA13 Silent p.A642A 0.38 TCGA-A6-5661-01 5 140263838 140263838 C T PCDHA13 Missense_Mutation p.T662M 0.28 deleterious_low_confidence(0.03) probably_damaging(0.946) TCGA-A6-5661-01 5 140731568 140731568 G A PCDHGB1 Missense_Mutation p.G581S 0.28 deleterious(0) probably_damaging(0.954) TCGA-A6-5661-01 5 140774091 140774091 G T PCDHGA8 Missense_Mutation p.G571C 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-5661-01 5 141336497 141336497 C T PCDH12 Missense_Mutation p.R307H 0.22 tolerated(0.14) possibly_damaging(0.81) TCGA-A6-5661-01 5 145613114 145613114 C - RBM27 Frame_Shift_Del p.P319Lfs*14 0.26 TCGA-A6-5661-01 5 145665684 145665684 A T RBM27 3'UTR 0.28 TCGA-A6-5661-01 5 147695319 147695319 G A SPINK7 3'UTR 0.41 TCGA-A6-5661-01 5 153144075 153144075 C T GRIA1 Silent p.A645A 0.33 TCGA-A6-5661-01 5 15500697 15500697 G A FBXL7 5'UTR 0.26 TCGA-A6-5661-01 5 156899377 156899377 C T NIPAL4 Silent p.C270C 0.15 TCGA-A6-5661-01 5 167882511 167882511 C A WWC1 Missense_Mutation p.Q937K 0.22 deleterious(0) possibly_damaging(0.756) TCGA-A6-5661-01 5 167946092 167946092 T C RARS Missense_Mutation p.I627T 0.07 tolerated(0.09) benign(0.426) TCGA-A6-5661-01 5 169535265 169535266 - C FOXI1 Frame_Shift_Ins p.E265Rfs*15 0.21 TCGA-A6-5661-01 5 171327013 171327013 C T FBXW11 Silent p.Q155Q 0.29 TCGA-A6-5661-01 5 172573948 172573948 G A BNIP1 Missense_Mutation p.R55H 0.29 deleterious(0) benign(0.049) TCGA-A6-5661-01 5 176315459 176315459 G A HK3 Missense_Mutation p.T393M 0.48 tolerated(0.17) benign(0.149) TCGA-A6-5661-01 5 176863565 176863565 C T GRK6 Intron 0.46 TCGA-A6-5661-01 5 176893990 176893990 C T DBN1 Missense_Mutation p.R212Q 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5661-01 5 178548696 178548696 C T ADAMTS2 Silent p.P1048P 0.29 TCGA-A6-5661-01 5 192262 192262 C T LRRC14B Silent p.H203H 0.42 TCGA-A6-5661-01 5 31551487 31551487 G A C5orf22 Missense_Mutation p.V383M 0.35 tolerated(0.19) benign(0.037) TCGA-A6-5661-01 5 32072371 32072371 G A PDZD2 Silent p.P891P 0.20 TCGA-A6-5661-01 5 32420094 32420094 G T ZFR Silent p.A84A 0.27 TCGA-A6-5661-01 5 33549471 33549471 A C ADAMTS12 Missense_Mutation p.S1381R 0.52 deleterious(0) possibly_damaging(0.88) TCGA-A6-5661-01 5 33576343 33576343 G A ADAMTS12 Missense_Mutation p.T1263M 0.28 tolerated(0.1) benign(0.008) TCGA-A6-5661-01 5 33982455 33982455 C T SLC45A2 Missense_Mutation p.V150I 0.38 deleterious(0) probably_damaging(0.972) TCGA-A6-5661-01 5 36049038 36049038 C T UGT3A2 Missense_Mutation p.V266I 0.39 tolerated(0.18) benign(0.319) TCGA-A6-5661-01 5 36985083 36985083 A - NIPBL Frame_Shift_Del p.K603Sfs*11 0.30 TCGA-A6-5661-01 5 37162587 37162587 G A C5orf42 Missense_Mutation p.A2557V 0.13 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 5 38463034 38463034 C T EGFLAM Silent p.T940T 0.35 TCGA-A6-5661-01 5 39285017 39285018 - T C9 3'UTR 0.40 TCGA-A6-5661-01 5 458132 458132 G A EXOC3 Missense_Mutation p.V428I 0.25 tolerated(0.37) benign(0.01) TCGA-A6-5661-01 5 50091070 50091070 G T PARP8 Missense_Mutation p.R416I 0.30 tolerated_low_confidence(0.3) benign(0.039) TCGA-A6-5661-01 5 56176980 56176980 T A MAP3K1 Missense_Mutation p.N750K 0.28 deleterious(0) benign(0.034) TCGA-A6-5661-01 5 60050220 60050220 A - ELOVL7 3'UTR 0.35 TCGA-A6-5661-01 5 68692323 68692323 T A RAD17 Missense_Mutation p.S519T 0.32 tolerated(0.14) benign(0.155) TCGA-A6-5661-01 5 71015259 71015259 G A CARTPT Missense_Mutation p.A47T 0.17 tolerated(0.8) benign(0.002) TCGA-A6-5661-01 5 71630868 71630868 C T PTCD2 Silent p.D164D 0.22 TCGA-A6-5661-01 5 72199545 72199545 T - TNPO1 Frame_Shift_Del p.C844Vfs*45 0.23 TCGA-A6-5661-01 5 7396476 7396476 G A ADCY2 Missense_Mutation p.G23R 0.37 tolerated_low_confidence(0.49) benign(0.036) TCGA-A6-5661-01 5 77423890 77423890 G A AP3B1 Silent p.P644P 0.39 TCGA-A6-5661-01 5 79030636 79030636 T C CMYA5 Silent p.S2016S 0.36 TCGA-A6-5661-01 5 85589042 85589042 C T NBPF22P RNA 0.32 TCGA-A6-5661-01 5 86690204 86690204 G A CCNH 3'UTR 0.35 TCGA-A6-5661-01 5 94956017 94956017 C T GPR150 Missense_Mutation p.A13V 0.25 tolerated_low_confidence(0.19) probably_damaging(0.918) TCGA-A6-5661-01 5 96228147 96228147 T C ERAP2 Missense_Mutation p.L372P 0.28 deleterious(0) possibly_damaging(0.513) TCGA-A6-5661-01 6 107100176 107100176 G A QRSL1 Missense_Mutation p.R217H 0.37 deleterious(0) benign(0.126) TCGA-A6-5661-01 6 10891745 10891746 - A SYCP2L Frame_Shift_Ins p.N5Kfs*9 0.12 TCGA-A6-5661-01 6 11104368 11104368 A G ERVFRD-1 Silent p.I392I 0.36 TCGA-A6-5661-01 6 114181889 114181889 T - MARCKS 3'UTR 0.36 TCGA-A6-5661-01 6 117073801 117073801 G A FAM162B Missense_Mutation p.R150C 0.18 deleterious(0) unknown(0) TCGA-A6-5661-01 6 126206302 126206302 C T NCOA7 Intron 0.34 TCGA-A6-5661-01 6 127601448 127601448 T - RNF146 5'UTR 0.09 TCGA-A6-5661-01 6 131895411 131895411 C A ARG1 Intron 0.08 TCGA-A6-5661-01 6 132891982 132891982 C A TAAR6 Missense_Mutation p.D174E 0.30 tolerated(1) benign(0.023) TCGA-A6-5661-01 6 135375825 135375825 G A HBS1L Missense_Mutation p.A2V 0.29 deleterious(0) possibly_damaging(0.845) TCGA-A6-5661-01 6 136904875 136904875 C - MAP3K5 Frame_Shift_Del p.A1077Lfs*6 0.21 TCGA-A6-5661-01 6 137243791 137243791 G A SLC35D3 Silent p.A75A 0.39 TCGA-A6-5661-01 6 139583804 139583804 C A TXLNB Missense_Mutation p.S265I 0.23 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 6 147124575 147124576 - G ADGB Intron 0.26 TCGA-A6-5661-01 6 147660522 147660522 T C STXBP5 Splice_Site p.X752_splice 0.31 TCGA-A6-5661-01 6 152623193 152623193 C T SYNE1 Silent p.L5784L 0.37 TCGA-A6-5661-01 6 152674412 152674412 A T SYNE1 Missense_Mutation p.L3747M 0.33 benign(0.005) TCGA-A6-5661-01 6 152737985 152737985 G A SYNE1 Missense_Mutation p.R1863W 0.32 probably_damaging(0.999) TCGA-A6-5661-01 6 155114052 155114052 G A SCAF8 Silent p.P139P 0.33 TCGA-A6-5661-01 6 157521895 157521895 C T ARID1B Silent p.G1389G 0.10 TCGA-A6-5661-01 6 158454626 158454626 G A SYNJ2 Missense_Mutation p.V209I 0.35 tolerated(0.76) benign(0.004) TCGA-A6-5661-01 6 159654144 159654144 C A FNDC1 Missense_Mutation p.S867Y 0.22 deleterious_low_confidence(0) unknown(0) TCGA-A6-5661-01 6 160212014 160212014 C T MRPL18 Missense_Mutation p.A32V 0.24 tolerated(0.73) benign(0.001) TCGA-A6-5661-01 6 160668309 160668309 C A SLC22A2 Missense_Mutation p.R288S 0.09 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 6 161087340 161087340 G A LPA Intron 0.34 TCGA-A6-5661-01 6 161137769 161137769 G T PLG Missense_Mutation p.W254L 0.16 deleterious(0.01) possibly_damaging(0.866) TCGA-A6-5661-01 6 161173974 161173974 T C PLG Missense_Mutation p.Y772H 0.06 deleterious(0) probably_damaging(0.997) TCGA-A6-5661-01 6 161470762 161470762 G A MAP3K4 Silent p.S486S 0.28 TCGA-A6-5661-01 6 161574555 161574555 G A AGPAT4 Intron 0.36 TCGA-A6-5661-01 6 18130994 18130994 G A TPMT Missense_Mutation p.R215C 0.34 deleterious(0.01) possibly_damaging(0.704) TCGA-A6-5661-01 6 18161643 18161643 G A KDM1B Missense_Mutation p.C58Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 6 24357601 24357601 G - KAAG1 5'UTR 0.29 TCGA-A6-5661-01 6 24569028 24569028 G A KIAA0319 Silent p.L707L 0.29 TCGA-A6-5661-01 6 25426775 25426775 G A LRRC16A Missense_Mutation p.S79N 0.09 tolerated(0.55) benign(0.001) TCGA-A6-5661-01 6 26045822 26045822 C T HIST1H3C Silent p.L62L 0.30 TCGA-A6-5661-01 6 30653327 30653327 C A PPP1R18 Missense_Mutation p.G157W 0.28 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-A6-5661-01 6 31129618 31129618 G - TCF19 Frame_Shift_Del p.T213Pfs*45 0.28 TCGA-A6-5661-01 6 3123919 3123919 G A BPHL Missense_Mutation p.V46M 0.18 deleterious(0) probably_damaging(0.988) TCGA-A6-5661-01 6 31759455 31759455 G - VARS Frame_Shift_Del p.N345Mfs*2 0.26 TCGA-A6-5661-01 6 31927864 31927864 G A SKIV2L Nonsense_Mutation p.W68* 0.28 TCGA-A6-5661-01 6 32011600 32011600 G A TNXB Missense_Mutation p.A248V 0.16 tolerated(1) possibly_damaging(0.507) TCGA-A6-5661-01 6 32130627 32130627 G - PPT2 Frame_Shift_Del p.A278Pfs*2 0.31 TCGA-A6-5661-01 6 32808648 32808650 TCT - PSMB8 3'UTR 0.47 TCGA-A6-5661-01 6 32810027 32810027 G A PSMB8 Nonsense_Mutation p.R141* 0.23 TCGA-A6-5661-01 6 32942417 32942417 A - BRD2 Frame_Shift_Del p.K71Sfs*15 0.09 TCGA-A6-5661-01 6 33632928 33632928 C A ITPR3 Missense_Mutation p.S449R 0.34 deleterious(0.03) possibly_damaging(0.623) TCGA-A6-5661-01 6 34024416 34024416 C T GRM4 Missense_Mutation p.R358H 0.27 deleterious(0) possibly_damaging(0.797) TCGA-A6-5661-01 6 34831834 34831834 G A UHRF1BP1 Missense_Mutation p.A1091T 0.24 tolerated(0.23) benign(0.021) TCGA-A6-5661-01 6 36483214 36483214 C T STK38 Silent p.Q190Q 0.15 TCGA-A6-5661-01 6 39285569 39285569 C T KCNK16 Missense_Mutation p.R163H 0.26 tolerated(0.09) benign(0.024) TCGA-A6-5661-01 6 42978683 42978683 C T PPP2R5D Missense_Mutation p.T540I 0.33 tolerated(0.2) benign(0.005) TCGA-A6-5661-01 6 43154777 43154777 A C CUL9 Missense_Mutation p.E444A 0.31 deleterious(0.04) benign(0.015) TCGA-A6-5661-01 6 43307536 43307538 GAG - ZNF318 In_Frame_Del p.L1400del 0.34 TCGA-A6-5661-01 6 44117653 44117653 C A TMEM63B Missense_Mutation p.L491I 0.30 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 6 45983226 45983226 G T CLIC5 Intron 0.31 TCGA-A6-5661-01 6 46111353 46111353 T A ENPP4 Missense_Mutation p.D446E 0.38 tolerated(0.15) benign(0.016) TCGA-A6-5661-01 6 46607361 46607362 AG - CYP39A1 Frame_Shift_Del p.I121Yfs*20 0.08 TCGA-A6-5661-01 6 47200699 47200699 G A TNFRSF21 Silent p.R590R 0.43 TCGA-A6-5661-01 6 47675978 47675978 A C GPR115 Missense_Mutation p.S38R 0.37 tolerated(0.49) benign(0.001) TCGA-A6-5661-01 6 49409598 49409598 C T MUT Missense_Mutation p.R588H 0.35 deleterious_low_confidence(0.05) possibly_damaging(0.607) TCGA-A6-5661-01 6 49819810 49819810 G A CRISP1 Silent p.L33L 0.30 TCGA-A6-5661-01 6 52268424 52268424 T C PAQR8 Missense_Mutation p.L138P 0.09 deleterious(0.01) benign(0.133) TCGA-A6-5661-01 6 52268989 52268991 CTT - PAQR8 In_Frame_Del p.F329del 0.14 TCGA-A6-5661-01 6 53989505 53989505 G - MLIP Frame_Shift_Del p.I154Lfs*11 0.24 TCGA-A6-5661-01 6 56335938 56335938 C T DST Silent p.T4806T 0.32 TCGA-A6-5661-01 6 56336906 56336906 G A DST Missense_Mutation p.A4747V 0.34 probably_damaging(0.999) TCGA-A6-5661-01 6 6002628 6002628 G A NRN1 Missense_Mutation p.P53L 0.20 deleterious(0) probably_damaging(0.928) TCGA-A6-5661-01 6 71571705 71571705 A G SMAP1 3'UTR 0.37 TCGA-A6-5661-01 6 74079100 74079100 G A OOEP Nonsense_Mutation p.R67* 0.25 TCGA-A6-5661-01 6 75843639 75843639 C T COL12A1 Missense_Mutation p.A1867T 0.31 probably_damaging(0.999) TCGA-A6-5661-01 6 75884952 75884952 G T COL12A1 Missense_Mutation p.P838T 0.35 probably_damaging(0.932) TCGA-A6-5661-01 6 76640702 76640702 G A IMPG1 Silent p.C737C 0.32 TCGA-A6-5661-01 6 82891708 82891708 G A IBTK Missense_Mutation p.R1205W 0.41 tolerated(0.07) benign(0.004) TCGA-A6-5661-01 6 88385618 88385618 A G AKIRIN2 Silent p.H187H 0.29 TCGA-A6-5661-01 6 89793677 89793677 A - PNRC1 Frame_Shift_Del p.K251Sfs*14 0.23 TCGA-A6-5661-01 6 89864571 89864571 A - PM20D2 Frame_Shift_Del p.K289Rfs*46 0.25 TCGA-A6-5661-01 6 97053904 97053905 - T FHL5 Frame_Shift_Ins p.E156* 0.24 TCGA-A6-5661-01 6 99284177 99284177 G T POU3F2 3'UTR 0.35 TCGA-A6-5661-01 7 100276230 100276230 C T GNB2 Silent p.D303D 0.10 TCGA-A6-5661-01 7 100285695 100285695 G - GIGYF1 Frame_Shift_Del p.P25Hfs*58 0.42 TCGA-A6-5661-01 7 100686398 100686398 G A MUC17 Missense_Mutation p.D3901N 0.32 benign(0.004) TCGA-A6-5661-01 7 100773713 100773713 G A SERPINE1 Missense_Mutation p.A95T 0.36 deleterious(0.04) benign(0.277) TCGA-A6-5661-01 7 102087006 102087006 G A ORAI2 Missense_Mutation p.R91Q 0.43 tolerated(0.37) benign(0.002) TCGA-A6-5661-01 7 103338335 103338335 C T RELN Missense_Mutation p.G370S 0.13 tolerated(0.17) probably_damaging(0.998) TCGA-A6-5661-01 7 105662716 105662716 G A CDHR3 Missense_Mutation p.R633H 0.29 tolerated(0.14) benign(0.003) TCGA-A6-5661-01 7 107234540 107234540 T - BCAP29 Frame_Shift_Del p.W114Gfs*2 0.25 TCGA-A6-5661-01 7 111368442 111368442 G A DOCK4 Missense_Mutation p.A1930V 0.50 deleterious_low_confidence(0) benign(0.163) TCGA-A6-5661-01 7 111508079 111508079 C T DOCK4 Silent p.S747S 0.32 TCGA-A6-5661-01 7 112407675 112407675 C A TMEM168 Missense_Mutation p.R557S 0.31 deleterious(0.01) benign(0.261) TCGA-A6-5661-01 7 113517648 113517648 C T PPP1R3A 3'UTR 0.24 TCGA-A6-5661-01 7 117432000 117432000 G T CTTNBP2 Missense_Mutation p.P417H 0.31 tolerated(0.19) benign(0.396) TCGA-A6-5661-01 7 122338124 122338124 A G RNF133 Silent p.I283I 0.31 TCGA-A6-5661-01 7 123109276 123109276 T C IQUB Missense_Mutation p.T525A 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-A6-5661-01 7 124386408 124386408 T - GPR37 3'UTR 0.29 TCGA-A6-5661-01 7 127447557 127447557 G A SND1 Missense_Mutation p.R391H 0.25 deleterious(0) probably_damaging(0.991) TCGA-A6-5661-01 7 128470614 128470614 C T FLNC 5'UTR 0.41 TCGA-A6-5661-01 7 128485259 128485259 C T FLNC Missense_Mutation p.A1247V 0.32 deleterious(0) possibly_damaging(0.817) TCGA-A6-5661-01 7 131859587 131859587 G A PLXNA4 Missense_Mutation p.R1323W 0.39 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 7 133948793 133948793 A G LRGUK 3'UTR 0.32 TCGA-A6-5661-01 7 134730317 134730317 C T AGBL3 Missense_Mutation p.R574W 0.34 deleterious(0) possibly_damaging(0.899) TCGA-A6-5661-01 7 134931302 134931302 G A STRA8 Missense_Mutation p.A194T 0.27 tolerated(0.55) benign(0.073) TCGA-A6-5661-01 7 135377035 135377035 G - SLC13A4 Intron 0.22 TCGA-A6-5661-01 7 13946171 13946171 G A ETV1 Nonsense_Mutation p.R332* 0.33 TCGA-A6-5661-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-A6-5661-01 7 141351333 141351333 A C AGK Missense_Mutation p.K352T 0.25 deleterious(0.01) possibly_damaging(0.501) TCGA-A6-5661-01 7 143771523 143771523 G A OR2A25 Missense_Mutation p.A71T 0.31 tolerated(0.08) benign(0.087) TCGA-A6-5661-01 7 1484880 1484880 C A MICALL2 Missense_Mutation p.A276S 0.36 deleterious(0.02) possibly_damaging(0.477) TCGA-A6-5661-01 7 148525905 148525905 A G EZH2 Silent p.D184D 0.36 TCGA-A6-5661-01 7 149462736 149462736 C T ZNF467 Silent p.T285T 0.11 TCGA-A6-5661-01 7 149500639 149500639 C T SSPO RNA 0.32 TCGA-A6-5661-01 7 149559453 149559453 A G ZNF862 Silent p.T1068T 0.41 TCGA-A6-5661-01 7 150068641 150068641 G A REPIN1 Missense_Mutation p.R161H 0.32 tolerated(0.16) benign(0.009) TCGA-A6-5661-01 7 150094830 150094830 C T ZNF775 Missense_Mutation p.R421W 0.50 deleterious(0.01) benign(0.183) TCGA-A6-5661-01 7 150710922 150710922 C T NOS3 Silent p.N1122N 0.37 TCGA-A6-5661-01 7 150839338 150839338 C A AGAP3 Missense_Mutation p.P683H 0.40 deleterious(0) probably_damaging(0.952) TCGA-A6-5661-01 7 151254133 151254133 T - PRKAG2 3'UTR 0.26 TCGA-A6-5661-01 7 155471342 155471342 T - RBM33 Frame_Shift_Del p.L72Cfs*20 0.27 TCGA-A6-5661-01 7 158664004 158664004 C T WDR60 Missense_Mutation p.R81C 0.37 deleterious(0.01) benign(0.116) TCGA-A6-5661-01 7 18684342 18684342 C A HDAC9 Missense_Mutation p.L321M 0.19 tolerated(0.2) possibly_damaging(0.525) TCGA-A6-5661-01 7 19156616 19156616 C T TWIST1 Missense_Mutation p.R110Q 0.33 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 7 22767227 22767227 G A IL6 Missense_Mutation p.D62N 0.18 tolerated(0.48) benign(0.064) TCGA-A6-5661-01 7 26245999 26245999 A - CBX3 Frame_Shift_Del p.K14Nfs*23 0.22 TCGA-A6-5661-01 7 27135444 27135445 - T HOXA1 Frame_Shift_Ins p.S30Ifs*4 0.46 TCGA-A6-5661-01 7 27211447 27211447 G T HOXA10 3'UTR 0.16 TCGA-A6-5661-01 7 29874359 29874359 C - WIPF3 Frame_Shift_Del p.P8Hfs*24 0.40 TCGA-A6-5661-01 7 29924080 29924080 C - WIPF3 Frame_Shift_Del p.P325Rfs*49 0.33 TCGA-A6-5661-01 7 30465158 30465158 C T NOD1 3'UTR 0.33 TCGA-A6-5661-01 7 33045100 33045100 G A FKBP9 3'UTR 0.22 TCGA-A6-5661-01 7 36571775 36571775 G A AOAH Missense_Mutation p.T468M 0.37 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 7 36910077 36910077 G A ELMO1 Missense_Mutation p.P609L 0.33 deleterious(0) benign(0.213) TCGA-A6-5661-01 7 4011133 4011133 G A SDK1 Missense_Mutation p.V584M 0.33 tolerated(0.11) benign(0.105) TCGA-A6-5661-01 7 42005798 42005798 G A GLI3 Missense_Mutation p.A958V 0.29 deleterious(0) probably_damaging(0.992) TCGA-A6-5661-01 7 43351395 43351395 G A HECW1 Missense_Mutation p.A21T 0.29 deleterious_low_confidence(0.04) benign(0.103) TCGA-A6-5661-01 7 44047093 44047093 C T SPDYE1 Missense_Mutation p.R287C 0.29 tolerated_low_confidence(0.06) benign(0.013) TCGA-A6-5661-01 7 47408788 47408788 G A TNS3 Silent p.H485H 0.37 TCGA-A6-5661-01 7 4799037 4799037 G A FOXK1 Missense_Mutation p.V503I 0.27 tolerated(0.15) benign(0.01) TCGA-A6-5661-01 7 4821214 4821214 C T AP5Z1 Silent p.C65C 0.30 TCGA-A6-5661-01 7 4829499 4829499 C T AP5Z1 Silent p.L582L 0.23 TCGA-A6-5661-01 7 4855923 4855923 C T RADIL Silent p.S634S 0.40 TCGA-A6-5661-01 7 5105282 5105282 A G RBAK 3'UTR 0.35 TCGA-A6-5661-01 7 5413857 5413857 C T TNRC18 Missense_Mutation p.A1020T 0.27 benign(0.016) TCGA-A6-5661-01 7 55223620 55223620 C T EGFR Silent p.C329C 0.12 TCGA-A6-5661-01 7 56148987 56148987 G A PHKG1 Silent p.I340I 0.27 TCGA-A6-5661-01 7 6449537 6449537 G A DAGLB Silent p.S650S 0.10 TCGA-A6-5661-01 7 65156771 65156771 T - INTS4L2 RNA 0.31 TCGA-A6-5661-01 7 6628429 6628429 C T ZDHHC4 Missense_Mutation p.P308L 0.11 tolerated(0.15) benign(0.006) TCGA-A6-5661-01 7 6781417 6781417 C T PMS2CL RNA 0.23 TCGA-A6-5661-01 7 7472328 7472328 C T COL28A1 Missense_Mutation p.V622I 0.14 tolerated(0.05) benign(0.021) TCGA-A6-5661-01 7 75048170 75048170 G A POM121C Missense_Mutation p.A958V 0.05 deleterious(0.01) benign(0.209) TCGA-A6-5661-01 7 75053447 75053447 G T POM121C Silent p.T311T 0.10 TCGA-A6-5661-01 7 75511303 75511303 T C RHBDD2 Missense_Mutation p.I112T 0.36 deleterious(0.05) benign(0.363) TCGA-A6-5661-01 7 76866332 76866332 T C CCDC146 Silent p.H75H 0.30 TCGA-A6-5661-01 7 76891535 76891535 C T CCDC146 Nonsense_Mutation p.R362* 0.30 TCGA-A6-5661-01 7 76924111 76924111 T - CCDC146 Frame_Shift_Del p.F933Lfs*10 0.37 TCGA-A6-5661-01 7 87011834 87011834 C T CROT Silent p.L454L 0.35 TCGA-A6-5661-01 7 91631729 91631729 A G AKAP9 Missense_Mutation p.K833R 0.12 benign(0.012) TCGA-A6-5661-01 7 94539589 94539589 G - PPP1R9A Frame_Shift_Del p.R57Gfs*44 0.22 TCGA-A6-5661-01 7 95224435 95224435 G A PDK4 Nonsense_Mutation p.R58* 0.25 TCGA-A6-5661-01 7 96318182 96318182 C T SHFM1 3'UTR 0.32 TCGA-A6-5661-01 7 98562397 98562397 A G TRRAP Silent p.S2318S 0.30 TCGA-A6-5661-01 7 99056835 99056835 G A ATP5J2 Missense_Mutation p.S64L 0.36 tolerated(0.05) benign(0.009) TCGA-A6-5661-01 8 100729397 100729397 A G VPS13B Splice_Site p.X2177_splice 0.09 TCGA-A6-5661-01 8 101724923 101724923 C T PABPC1 Missense_Mutation p.R278H 0.35 tolerated(0.09) benign(0.04) TCGA-A6-5661-01 8 104337204 104337204 T - FZD6 Frame_Shift_Del p.F292Sfs*10 0.08 TCGA-A6-5661-01 8 10755923 10755923 C T XKR6 Missense_Mutation p.A489T 0.52 deleterious(0.03) benign(0.4) TCGA-A6-5661-01 8 110587332 110587332 C T SYBU Missense_Mutation p.V599M 0.41 tolerated(0.12) possibly_damaging(0.498) TCGA-A6-5661-01 8 113241029 113241029 A - CSMD3 Frame_Shift_Del p.F3640Lfs*61 0.27 TCGA-A6-5661-01 8 113988157 113988157 A G CSMD3 Silent p.P417P 0.31 TCGA-A6-5661-01 8 11420604 11420604 C T BLK Missense_Mutation p.R433W 0.31 deleterious(0) probably_damaging(0.991) TCGA-A6-5661-01 8 11996024 11996024 G C USP17L2 Silent p.L82L 0.27 TCGA-A6-5661-01 8 120596245 120596245 A - ENPP2 Frame_Shift_Del p.F523Sfs*19 0.27 TCGA-A6-5661-01 8 121705945 121705945 C T SNTB1 Missense_Mutation p.D259N 0.14 deleterious(0) possibly_damaging(0.754) TCGA-A6-5661-01 8 123965953 123965953 A - ZHX2 Frame_Shift_Del p.K736Sfs*11 0.30 TCGA-A6-5661-01 8 124141388 124141388 C T TBC1D31 Missense_Mutation p.R734C 0.35 deleterious(0.02) benign(0.009) TCGA-A6-5661-01 8 124221697 124221697 A - FAM83A 3'UTR 0.31 TCGA-A6-5661-01 8 125568630 125568630 C A MTSS1 Missense_Mutation p.G416V 0.41 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 8 128750933 128750933 C T MYC Missense_Mutation p.A157V 0.44 deleterious(0.03) probably_damaging(0.991) TCGA-A6-5661-01 8 12957453 12957453 C T DLC1 Missense_Mutation p.R798H 0.28 deleterious(0.03) benign(0.014) TCGA-A6-5661-01 8 12968281 12968281 A - DLC1 Frame_Shift_Del p.L491Wfs*13 0.29 TCGA-A6-5661-01 8 133980206 133980206 C T TG Missense_Mutation p.R1952W 0.40 deleterious(0.03) possibly_damaging(0.8) TCGA-A6-5661-01 8 135596241 135596241 C T ZFAT Silent p.K907K 0.31 TCGA-A6-5661-01 8 136569779 136569779 G A KHDRBS3 Missense_Mutation p.R187Q 0.25 tolerated(0.2) probably_damaging(0.982) TCGA-A6-5661-01 8 139164635 139164635 C T FAM135B Missense_Mutation p.V695I 0.33 deleterious(0.03) benign(0.04) TCGA-A6-5661-01 8 139890409 139890409 C T COL22A1 Missense_Mutation p.R81H 0.29 unknown(0) TCGA-A6-5661-01 8 142367015 142367015 G A GPR20 Missense_Mutation p.R337C 0.10 tolerated(0.06) benign(0.238) TCGA-A6-5661-01 8 142500310 142500310 G A MROH5 3'Flank 0.27 TCGA-A6-5661-01 8 143746675 143746676 - A JRK RNA 0.36 TCGA-A6-5661-01 8 143960889 143960889 G T CYP11B1 Intron 0.44 TCGA-A6-5661-01 8 144789097 144789097 C T CCDC166 Missense_Mutation p.A363T 0.26 tolerated(0.67) benign(0.061) TCGA-A6-5661-01 8 144995435 144995435 C A PLEC Missense_Mutation p.G2989C 0.09 probably_damaging(0.966) TCGA-A6-5661-01 8 145218700 145218700 C T MROH1 5'UTR 0.34 TCGA-A6-5661-01 8 145537812 145537812 C T HSF1 Missense_Mutation p.A470V 0.26 deleterious(0.02) probably_damaging(0.929) TCGA-A6-5661-01 8 146003853 146003853 C T ZNF34 Missense_Mutation p.A23T 0.25 tolerated(0.32) benign(0.005) TCGA-A6-5661-01 8 146156646 146156646 G A ZNF16 Silent p.G509G 0.29 TCGA-A6-5661-01 8 1954813 1954813 G A KBTBD11 3'UTR 0.19 TCGA-A6-5661-01 8 21997033 21997033 C T REEP4 Missense_Mutation p.A105T 0.30 tolerated(0.16) benign(0.001) TCGA-A6-5661-01 8 24775526 24775526 A - NEFM Frame_Shift_Del p.K721Rfs*18 0.21 TCGA-A6-5661-01 8 24813235 24813235 G A CTD-2168K21.2 5'Flank 0.09 TCGA-A6-5661-01 8 25718858 25718858 C A EBF2 Silent p.V377V 0.36 TCGA-A6-5661-01 8 26627771 26627771 G A ADRA1A Intron 0.32 TCGA-A6-5661-01 8 27320779 27320779 C T CHRNA2 Missense_Mutation p.R394H 0.16 tolerated(0.11) benign(0.003) TCGA-A6-5661-01 8 28573789 28573789 C T EXTL3 Silent p.N71N 0.31 TCGA-A6-5661-01 8 28988055 28988055 G A KIF13B Missense_Mutation p.R1024W 0.31 deleterious(0) probably_damaging(0.982) TCGA-A6-5661-01 8 29989759 29989759 C A MBOAT4 Missense_Mutation p.W336C 0.34 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 8 3046483 3046483 C T CSMD1 Missense_Mutation p.G1817S 0.30 probably_damaging(0.956) TCGA-A6-5661-01 8 3047536 3047536 C T CSMD1 Missense_Mutation p.E1766K 0.35 probably_damaging(0.973) TCGA-A6-5661-01 8 30706482 30706482 T C TEX15 Missense_Mutation p.T18A 0.08 tolerated(0.06) benign(0.067) TCGA-A6-5661-01 8 3166007 3166007 C T CSMD1 Missense_Mutation p.C1217Y 0.26 probably_damaging(0.952) TCGA-A6-5661-01 8 32613965 32613965 G A NRG1 Missense_Mutation p.R288Q 0.27 tolerated(0.43) probably_damaging(0.977) TCGA-A6-5661-01 8 37554688 37554688 C T ZNF703 Missense_Mutation p.A90V 0.35 deleterious(0.02) probably_damaging(0.939) TCGA-A6-5661-01 8 37688334 37688334 C T GPR124 Silent p.N275N 0.09 TCGA-A6-5661-01 8 37707281 37707281 G A BRF2 Silent p.C7C 0.43 TCGA-A6-5661-01 8 37729779 37729779 G A RAB11FIP1 Silent p.N847N 0.14 TCGA-A6-5661-01 8 41504132 41504132 C T NKX6-3 Missense_Mutation p.G82S 0.21 tolerated_low_confidence(0.51) benign(0) TCGA-A6-5661-01 8 41754001 41754001 C T ANK1 5'UTR 0.26 TCGA-A6-5661-01 8 418787 418787 G A FBXO25 Missense_Mutation p.D363N 0.16 tolerated(0.63) probably_damaging(0.996) TCGA-A6-5661-01 8 42958910 42958910 C A POMK Silent p.S73S 0.29 TCGA-A6-5661-01 8 54163470 54163470 C T OPRK1 Missense_Mutation p.G43D 0.35 tolerated(0.17) benign(0.001) TCGA-A6-5661-01 8 56015612 56015612 T C XKR4 Silent p.P188P 0.26 TCGA-A6-5661-01 8 57025552 57025552 G A MOS Silent p.S330S 0.12 TCGA-A6-5661-01 8 59409230 59409230 C T CYP7A1 Missense_Mutation p.V281M 0.08 deleterious(0) possibly_damaging(0.762) TCGA-A6-5661-01 8 59410903 59410903 C T CYP7A1 Missense_Mutation p.C69Y 0.23 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 8 65494101 65494101 C T BHLHE22 Missense_Mutation p.R252C 0.40 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 8 69730664 69730664 C A C8orf34 3'UTR 0.50 TCGA-A6-5661-01 8 70981692 70981692 C T PRDM14 Missense_Mutation p.G135D 0.31 tolerated(0.28) benign(0.007) TCGA-A6-5661-01 8 71037061 71037061 G A NCOA2 Missense_Mutation p.T1319M 0.34 deleterious(0.03) possibly_damaging(0.634) TCGA-A6-5661-01 8 72935014 72935014 G A TRPA1 3'UTR 0.35 TCGA-A6-5661-01 8 73480179 73480179 C T KCNB2 Silent p.H70H 0.26 TCGA-A6-5661-01 8 73850023 73850023 C T KCNB2 Silent p.D811D 0.14 TCGA-A6-5661-01 8 73942591 73942591 C T TERF1 Missense_Mutation p.A303V 0.30 tolerated(0.43) benign(0.008) TCGA-A6-5661-01 8 77896147 77896147 A - PEX2 Frame_Shift_Del p.S90Pfs*4 0.25 TCGA-A6-5661-01 8 87439994 87439994 G A WWP1 Missense_Mutation p.R427Q 0.24 tolerated(0.08) probably_damaging(0.998) TCGA-A6-5661-01 8 95444391 95444391 G A FSBP Missense_Mutation p.R290W 0.30 deleterious(0) benign(0.412) TCGA-A6-5661-01 8 99135616 99135616 T C POP1 Silent p.P17P 0.32 TCGA-A6-5661-01 9 100000806 100000806 C T CCDC180 5'UTR 0.46 TCGA-A6-5661-01 9 100840478 100840478 G A NANS Missense_Mutation p.R151H 0.31 tolerated(0.26) possibly_damaging(0.86) TCGA-A6-5661-01 9 100971251 100971251 C T TBC1D2 Missense_Mutation p.E617K 0.35 deleterious(0) probably_damaging(0.942) TCGA-A6-5661-01 9 101984837 101984838 - C SEC61B Frame_Shift_Ins p.S7Qfs*4 0.45 TCGA-A6-5661-01 9 103070935 103070935 G A TEX10 Missense_Mutation p.T771M 0.22 tolerated(0.33) possibly_damaging(0.59) TCGA-A6-5661-01 9 109690168 109690168 C T ZNF462 Silent p.N1325N 0.37 TCGA-A6-5661-01 9 110248003 110248003 C T KLF4 3'UTR 0.24 TCGA-A6-5661-01 9 111679886 111679887 - A IKBKAP Frame_Shift_Ins p.E269* 0.18 TCGA-A6-5661-01 9 113006381 113006381 A - TXN 3'UTR 0.35 TCGA-A6-5661-01 9 113228245 113228245 C A SVEP1 Silent p.L1074L 0.36 TCGA-A6-5661-01 9 114289969 114289969 G A ZNF483 Silent p.E98E 0.29 TCGA-A6-5661-01 9 116038953 116038953 G A PRPF4 Silent p.G52G 0.12 TCGA-A6-5661-01 9 116812193 116812193 A - ZNF618 Frame_Shift_Del p.N779Mfs*52 0.50 TCGA-A6-5661-01 9 116855775 116855775 C T KIF12 Missense_Mutation p.R330H 0.33 tolerated(0.31) benign(0.005) TCGA-A6-5661-01 9 117092213 117092213 T C ORM2 Missense_Mutation p.L10P 0.25 deleterious(0) unknown(0) TCGA-A6-5661-01 9 119129996 119129996 G A PAPPA Missense_Mutation p.R1523H 0.29 deleterious(0.01) possibly_damaging(0.522) TCGA-A6-5661-01 9 124966927 124966927 G - LHX6 3'UTR 0.24 TCGA-A6-5661-01 9 125673991 125673991 C A ZBTB6 Nonsense_Mutation p.E121* 0.38 TCGA-A6-5661-01 9 126128584 126128584 C A CRB2 Silent p.P231P 0.57 TCGA-A6-5661-01 9 128728325 128728325 C T PBX3 3'UTR 0.21 TCGA-A6-5661-01 9 129597736 129597736 T - ZBTB43 3'UTR 0.21 TCGA-A6-5661-01 9 130476562 130476562 C T PTRH1 Splice_Site p.X155_splice 0.08 TCGA-A6-5661-01 9 131027873 131027875 CTT - GOLGA2 In_Frame_Del p.K281del 0.43 TCGA-A6-5661-01 9 131482723 131482723 G A PKN3 Silent p.V836V 0.12 TCGA-A6-5661-01 9 131517790 131517790 G A ZER1 Missense_Mutation p.R19C 0.08 deleterious(0) possibly_damaging(0.609) TCGA-A6-5661-01 9 131684597 131684597 G A PHYHD1 5'UTR 0.32 TCGA-A6-5661-01 9 131784601 131784601 C A SH3GLB2 Missense_Mutation p.K55N 0.43 deleterious(0.01) probably_damaging(0.949) TCGA-A6-5661-01 9 133760833 133760833 C T ABL1 Silent p.S1071S 0.19 TCGA-A6-5661-01 9 133760960 133760960 C T ABL1 Missense_Mutation p.R1114W 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-5661-01 9 133927940 133927940 C - LAMC3 Frame_Shift_Del p.D568Tfs*8 0.30 TCGA-A6-5661-01 9 134471752 134471752 G A RAPGEF1 Silent p.D706D 0.20 TCGA-A6-5661-01 9 135073662 135073662 T C NTNG2 Missense_Mutation p.F175L 0.53 deleterious(0) probably_damaging(0.993) TCGA-A6-5661-01 9 135277295 135277295 G A TTF1 Missense_Mutation p.A305V 0.37 tolerated_low_confidence(0.18) benign(0.007) TCGA-A6-5661-01 9 136230485 136230485 G A SURF4 Missense_Mutation p.H232Y 0.35 tolerated(0.93) possibly_damaging(0.811) TCGA-A6-5661-01 9 136295195 136295195 G A ADAMTS13 Missense_Mutation p.A321T 0.44 deleterious(0) probably_damaging(0.966) TCGA-A6-5661-01 9 136319716 136319716 G A ADAMTS13 Missense_Mutation p.R1075H 0.28 tolerated(0.05) benign(0.009) TCGA-A6-5661-01 9 136595252 136595252 G A SARDH Missense_Mutation p.R250W 0.37 deleterious(0) possibly_damaging(0.901) TCGA-A6-5661-01 9 136915566 136915566 G - BRD3 Frame_Shift_Del p.P215Qfs*28 0.44 TCGA-A6-5661-01 9 139092439 139092439 G A LHX3 Silent p.D85D 0.32 TCGA-A6-5661-01 9 139369891 139369892 CA - SEC16A Frame_Shift_Del p.W726Gfs*4 0.44 TCGA-A6-5661-01 9 139747744 139747744 C T MAMDC4 Silent p.H54H 0.33 TCGA-A6-5661-01 9 139943088 139943088 G T ENTPD2 3'UTR 0.33 TCGA-A6-5661-01 9 140051227 140051227 C A GRIN1 Missense_Mutation p.R281S 0.33 tolerated(0.84) benign(0.007) TCGA-A6-5661-01 9 140079405 140079405 G A ANAPC2 Silent p.Y336Y 0.36 TCGA-A6-5661-01 9 140109136 140109136 G T NDOR1 Silent p.R279R 0.50 TCGA-A6-5661-01 9 140130796 140130796 C - SLC34A3 Frame_Shift_Del p.P578Rfs*63 0.33 TCGA-A6-5661-01 9 140245916 140245916 C T EXD3 Missense_Mutation p.R413Q 0.32 tolerated(0.37) benign(0.014) TCGA-A6-5661-01 9 140468711 140468711 C T DPH7 Missense_Mutation p.E197K 0.27 deleterious(0) probably_damaging(0.935) TCGA-A6-5661-01 9 14720298 14720298 G A CER1 Silent p.A198A 0.30 TCGA-A6-5661-01 9 14863883 14863883 G T FREM1 Missense_Mutation p.L85I 0.24 deleterious(0.01) possibly_damaging(0.703) TCGA-A6-5661-01 9 17298286 17298286 A G CNTLN Missense_Mutation p.D361G 0.36 deleterious(0.02) probably_damaging(0.968) TCGA-A6-5661-01 9 18928403 18928403 C T FAM154A Missense_Mutation p.V358I 0.40 tolerated(0.49) benign(0.008) TCGA-A6-5661-01 9 27185520 27185520 C T TEK Missense_Mutation p.A407V 0.07 deleterious(0.02) possibly_damaging(0.452) TCGA-A6-5661-01 9 33442211 33442212 - G AQP3 Intron 0.18 TCGA-A6-5661-01 9 33472026 33472026 C A NOL6 Missense_Mutation p.R118S 0.35 tolerated(0.87) benign(0.001) TCGA-A6-5661-01 9 34724988 34724988 G T FAM205A Missense_Mutation p.A750D 0.26 tolerated(0.13) benign(0.002) TCGA-A6-5661-01 9 36657290 36657290 C T MELK Missense_Mutation p.A369V 0.17 tolerated(0.58) benign(0) TCGA-A6-5661-01 9 37034075 37034075 T - PAX5 5'UTR 0.20 TCGA-A6-5661-01 9 37532021 37532021 C T FBXO10 Missense_Mutation p.R485Q 0.08 tolerated(0.08) benign(0.021) TCGA-A6-5661-01 9 37784757 37784757 G A EXOSC3 Silent p.S95S 0.27 TCGA-A6-5661-01 9 37888003 37888003 C T SLC25A51 Missense_Mutation p.R182Q 0.33 deleterious(0.04) possibly_damaging(0.558) TCGA-A6-5661-01 9 39086105 39086105 A G CNTNAP3 Intron 0.08 TCGA-A6-5661-01 9 39102686 39102686 C T CNTNAP3 Missense_Mutation p.D855N 0.19 deleterious(0.01) probably_damaging(1) TCGA-A6-5661-01 9 73150481 73150481 C A TRPM3 3'UTR 0.36 TCGA-A6-5661-01 9 74843109 74843109 A G GDA Intron 0.33 TCGA-A6-5661-01 9 78682946 78682946 C T PCSK5 Silent p.N236N 0.33 TCGA-A6-5661-01 9 84564090 84564090 C T RP11-383M4.6 Intron 0.36 TCGA-A6-5661-01 9 88642543 88642543 C - GOLM1 3'UTR 0.25 TCGA-A6-5661-01 9 90535831 90535831 C T SPATA31C1 RNA 0.40 TCGA-A6-5661-01 9 91609148 91609148 C - C9orf47 3'UTR 0.24 TCGA-A6-5661-01 9 95179692 95179692 T G OMD Missense_Mutation p.D50A 0.30 deleterious(0.03) benign(0.05) TCGA-A6-5661-01 9 95477375 95477375 T C BICD2 3'UTR 0.17 TCGA-A6-5661-01 9 95738723 95738723 C T FGD3 Missense_Mutation p.T62M 0.39 tolerated(0.16) benign(0.008) TCGA-A6-5661-01 9 97365799 97365799 C - FBP1 Frame_Shift_Del p.G294Efs*11 0.14 TCGA-A6-5661-01 9 977197 977197 C T DMRT3 Missense_Mutation p.R66W 0.19 deleterious(0) probably_damaging(0.999) TCGA-A6-5661-01 X 100808328 100808328 G A ARMCX1 Missense_Mutation p.A139T 0.39 tolerated_low_confidence(0.06) benign(0.002) TCGA-A6-5661-01 X 102528636 102528636 T - TCEAL5 3'UTR 0.26 TCGA-A6-5661-01 X 107420161 107420162 - T COL4A6 Frame_Shift_Ins p.G867Rfs*77 0.28 TCGA-A6-5661-01 X 107978211 107978211 C T IRS4 Missense_Mutation p.R455H 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.644) TCGA-A6-5661-01 X 108647641 108647641 G A GUCY2F Missense_Mutation p.R681C 0.06 tolerated(0.06) benign(0.005) TCGA-A6-5661-01 X 109416547 109416547 C T TMEM164 Silent p.I254I 0.29 TCGA-A6-5661-01 X 110494308 110494308 C T CAPN6 Missense_Mutation p.R332H 0.07 tolerated(0.2) benign(0) TCGA-A6-5661-01 X 110963368 110963368 G T ALG13 Missense_Mutation p.E432D 0.32 tolerated(0.46) probably_damaging(0.978) TCGA-A6-5661-01 X 11139975 11139975 G A HCCS 3'UTR 0.22 TCGA-A6-5661-01 X 114425309 114425309 C T RBMXL3 Silent p.S435S 0.34 TCGA-A6-5661-01 X 114863618 114863618 G T PLS3 Nonsense_Mutation p.G116* 0.07 TCGA-A6-5661-01 X 117575373 117575373 C T WDR44 Missense_Mutation p.R673C 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 X 117758580 117758580 C T DOCK11 Nonsense_Mutation p.R1184* 0.34 TCGA-A6-5661-01 X 117815704 117815704 C T DOCK11 Silent p.S1970S 0.31 TCGA-A6-5661-01 X 118586957 118586957 C - SLC25A43 Frame_Shift_Del p.Q320Rfs*6 0.11 TCGA-A6-5661-01 X 120181511 120181511 G A GLUD2 5'UTR 0.38 TCGA-A6-5661-01 X 123176453 123176453 G A STAG2 Silent p.Q140Q 0.33 TCGA-A6-5661-01 X 123519821 123519821 G A TENM1 Missense_Mutation p.R1928C 0.29 deleterious(0) probably_damaging(0.961) TCGA-A6-5661-01 X 123779167 123779167 C T TENM1 Missense_Mutation p.G568S 0.38 tolerated(1) benign(0) TCGA-A6-5661-01 X 125955278 125955278 C T CXorf64 Silent p.C219C 0.33 TCGA-A6-5661-01 X 128692881 128692881 C A OCRL Missense_Mutation p.L209I 0.37 tolerated(0.46) benign(0.003) TCGA-A6-5661-01 X 128926642 128926642 G T SASH3 Missense_Mutation p.G211C 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 X 133680741 133680741 G A MIR503HG 5'Flank 0.23 TCGA-A6-5661-01 X 134156539 134156539 C T FAM127C 5'UTR 0.38 TCGA-A6-5661-01 X 134483204 134483204 G C ZNF449 Missense_Mutation p.G175A 0.29 tolerated(0.43) benign(0.022) TCGA-A6-5661-01 X 135426684 135426684 C T GPR112 Silent p.S273S 0.34 TCGA-A6-5661-01 X 135579760 135579760 T C HTATSF1 Intron 0.31 TCGA-A6-5661-01 X 135593727 135593727 A - HTATSF1 Frame_Shift_Del p.V610Cfs*2 0.24 TCGA-A6-5661-01 X 135618392 135618392 C T VGLL1 Silent p.N71N 0.08 TCGA-A6-5661-01 X 135767979 135767979 G A ARHGEF6 Nonsense_Mutation p.Q417* 0.32 TCGA-A6-5661-01 X 13785265 13785265 T C OFD1 Silent p.I873I 0.35 TCGA-A6-5661-01 X 13785380 13785380 C T OFD1 Silent p.L912L 0.30 TCGA-A6-5661-01 X 138813878 138813880 ATA - ATP11C In_Frame_Del p.L1111del 0.40 TCGA-A6-5661-01 X 138914420 138914420 C T ATP11C 5'UTR 0.28 TCGA-A6-5661-01 X 139866270 139866270 G A CDR1 Silent p.L88L 0.09 TCGA-A6-5661-01 X 140984800 140984800 G A MAGEC3 Missense_Mutation p.C419Y 0.23 deleterious(0.03) benign(0.04) TCGA-A6-5661-01 X 1428511 1428511 G A CSF2RA 3'UTR 0.27 TCGA-A6-5661-01 X 148035220 148035220 G T AFF2 Missense_Mutation p.S503I 0.33 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 X 149106850 149106850 G A CXorf40B 5'UTR 0.40 TCGA-A6-5661-01 X 151284164 151284164 T G RP11-1007I13.4 RNA 0.17 TCGA-A6-5661-01 X 152616393 152616393 G A ZNF275 3'UTR 0.06 TCGA-A6-5661-01 X 152686559 152686559 G T ZFP92 Missense_Mutation p.G242C 0.13 deleterious(0) probably_damaging(1) TCGA-A6-5661-01 X 152915805 152915805 G A DUSP9 3'UTR 0.25 TCGA-A6-5661-01 X 153008757 153008757 G A ABCD1 Missense_Mutation p.A650T 0.27 tolerated(0.39) benign(0.005) TCGA-A6-5661-01 X 153042697 153042697 G T PLXNB3 Silent p.G1677G 0.11 TCGA-A6-5661-01 X 153044540 153044540 G C PLXNB3 3'UTR 0.30 TCGA-A6-5661-01 X 153073810 153073810 C T PDZD4 Intron 0.10 TCGA-A6-5661-01 X 153134974 153134974 C T L1CAM Splice_Site p.X423_splice 0.12 TCGA-A6-5661-01 X 153228790 153228790 G - HCFC1 Frame_Shift_Del p.R200Gfs*20 0.21 TCGA-A6-5661-01 X 153496112 153496112 C T OPN1MW2 Silent p.C280C 0.23 TCGA-A6-5661-01 X 153692406 153692406 C T PLXNA3 Missense_Mutation p.P554S 0.40 tolerated(0.53) benign(0.03) TCGA-A6-5661-01 X 155010163 155010164 - T SPRY3 3'UTR 0.24 TCGA-A6-5661-01 X 155227284 155227284 G A IL9R 5'UTR 0.35 TCGA-A6-5661-01 X 17819600 17819600 C A RAI2 Silent p.P177P 0.26 TCGA-A6-5661-01 X 17819908 17819908 C T RAI2 Missense_Mutation p.A75T 0.36 tolerated(0.5) possibly_damaging(0.682) TCGA-A6-5661-01 X 21995187 21995187 C A SMS Missense_Mutation p.P113H 0.31 deleterious(0) probably_damaging(0.909) TCGA-A6-5661-01 X 24024779 24024779 G A KLHL15 Missense_Mutation p.S11F 0.33 deleterious(0.01) benign(0.097) TCGA-A6-5661-01 X 26157773 26157773 A T MAGEB18 Missense_Mutation p.N224I 0.28 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 X 27765006 27765006 G A DCAF8L2 5'UTR 0.37 TCGA-A6-5661-01 X 27765447 27765447 A G DCAF8L2 Silent p.E145E 0.34 TCGA-A6-5661-01 X 2861170 2861170 G A ARSE Silent p.H354H 0.33 TCGA-A6-5661-01 X 30237947 30237948 - T MAGEB2 3'UTR 0.25 TCGA-A6-5661-01 X 30261814 30261814 G T MAGEB4 3'UTR 0.10 TCGA-A6-5661-01 X 30745654 30745654 G T GK Missense_Mutation p.A546S 0.09 tolerated(0.19) benign(0.249) TCGA-A6-5661-01 X 38280466 38280466 G A OTC 3'UTR 0.30 TCGA-A6-5661-01 X 38420870 38420870 T C TSPAN7 Missense_Mutation p.F24S 0.29 deleterious(0.02) benign(0.119) TCGA-A6-5661-01 X 39932084 39932085 - G BCOR Frame_Shift_Ins p.K839Qfs*5 0.27 TCGA-A6-5661-01 X 47058216 47058216 G A UBA1 Silent p.P5P 0.31 TCGA-A6-5661-01 X 48547046 48547046 C T WAS Intron 0.32 TCGA-A6-5661-01 X 48564955 48564955 G A SUV39H1 Missense_Mutation p.A348T 0.37 deleterious(0) probably_damaging(0.995) TCGA-A6-5661-01 X 48847407 48847407 C A GRIPAP1 Missense_Mutation p.E191D 0.10 benign(0.112) TCGA-A6-5661-01 X 49019268 49019268 G A MAGIX Missense_Mutation p.S14N 0.41 tolerated_low_confidence(0.12) benign(0.146) TCGA-A6-5661-01 X 49083407 49083407 G A CACNA1F Missense_Mutation p.A434V 0.39 tolerated(0.3) benign(0.069) TCGA-A6-5661-01 X 49113304 49113304 G A FOXP3 Missense_Mutation p.S184L 0.38 tolerated(0.39) benign(0.003) TCGA-A6-5661-01 X 50089664 50089664 C A CCNB3 Missense_Mutation p.P1223H 0.29 deleterious(0) probably_damaging(0.998) TCGA-A6-5661-01 X 53106223 53106223 C T GPR173 Silent p.C140C 0.37 TCGA-A6-5661-01 X 53106649 53106649 G A GPR173 Silent p.K282K 0.32 TCGA-A6-5661-01 X 54578332 54578332 G A GNL3L Missense_Mutation p.R369H 0.34 deleterious(0.03) benign(0.391) TCGA-A6-5661-01 X 54785087 54785087 G A ITIH6 Silent p.L474L 0.16 TCGA-A6-5661-01 X 57621895 57621895 G A ZXDB 3'UTR 0.17 TCGA-A6-5661-01 X 57936271 57936271 G A ZXDA Missense_Mutation p.A195V 0.39 tolerated_low_confidence(1) benign(0.001) TCGA-A6-5661-01 X 65486286 65486287 - C HEPH Frame_Shift_Ins p.R1140Qfs*4 0.27 TCGA-A6-5661-01 X 66937337 66937337 G A AR Missense_Mutation p.V731M 0.34 deleterious(0.01) benign(0.093) TCGA-A6-5661-01 X 68725668 68725668 C T FAM155B Silent p.S181S 0.36 TCGA-A6-5661-01 X 70782798 70782798 C T OGT Silent p.S693S 0.35 TCGA-A6-5661-01 X 71425315 71425315 T A ERCC6L Missense_Mutation p.N1101I 0.36 deleterious(0.03) probably_damaging(0.927) TCGA-A6-5661-01 X 71822046 71822046 G A PHKA1 Nonsense_Mutation p.R999* 0.33 TCGA-A6-5661-01 X 74293780 74293780 G A ABCB7 Silent p.C290C 0.33 TCGA-A6-5661-01 X 77254015 77254015 G A ATP7A Silent p.S459S 0.14 TCGA-A6-5661-01 X 91090552 91090552 G A PCDH11X Missense_Mutation p.V17M 0.30 deleterious(0.03) possibly_damaging(0.551) TCGA-A6-5662-01 10 27499853 27499853 T A ACBD5 Missense_Mutation p.K365I 0.43 deleterious(0.01) probably_damaging(0.952) TCGA-A6-5662-01 10 97447106 97447106 C T TCTN3 Missense_Mutation p.D212N 0.42 deleterious(0) probably_damaging(0.992) TCGA-A6-5662-01 11 102993723 102993723 G T DYNC2H1 Missense_Mutation p.G552V 0.11 benign(0.099) TCGA-A6-5662-01 11 118250329 118250329 G A UBE4A Missense_Mutation p.M587I 0.46 tolerated(0.18) benign(0.195) TCGA-A6-5662-01 11 118627953 118627953 C T DDX6 Missense_Mutation p.R346Q 0.43 deleterious(0) probably_damaging(0.968) TCGA-A6-5662-01 11 130278438 130278438 G A ADAMTS8 Missense_Mutation p.R674W 0.11 deleterious(0) possibly_damaging(0.462) TCGA-A6-5662-01 11 9496101 9496101 G A ZNF143 Silent p.G98G 0.47 TCGA-A6-5662-01 12 12874041 12874041 T A CDKN1B 3'UTR 0.46 TCGA-A6-5662-01 12 128899941 128899941 C T TMEM132C Silent p.N250N 0.79 TCGA-A6-5662-01 12 131360283 131360283 G T RAN Missense_Mutation p.V188F 0.09 tolerated(0.06) benign(0.012) TCGA-A6-5662-01 12 14928640 14928640 A G H2AFJ 3'UTR 0.25 TCGA-A6-5662-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.47 deleterious(0) possibly_damaging(0.479) TCGA-A6-5662-01 12 50040489 50040489 G A FMNL3 Intron 0.21 TCGA-A6-5662-01 12 56666879 56666880 - A CS Frame_Shift_Ins p.K464* 0.33 TCGA-A6-5662-01 12 66531699 66531699 A T TMBIM4 3'UTR 0.60 TCGA-A6-5662-01 12 72020202 72020202 A T ZFC3H1 Silent p.S1385S 0.81 TCGA-A6-5662-01 13 111160289 111160289 G T COL4A2 Silent p.A1534A 0.38 TCGA-A6-5662-01 13 38320390 38320390 C T TRPC4 Missense_Mutation p.R194H 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-A6-5662-01 13 48955550 48955550 C T RB1 Nonsense_Mutation p.R556* 0.18 TCGA-A6-5662-01 14 52178271 52178271 C T FRMD6 Missense_Mutation p.S246L 0.87 deleterious(0.02) possibly_damaging(0.856) TCGA-A6-5662-01 14 74534117 74534117 C T ALDH6A1 Silent p.L336L 0.90 TCGA-A6-5662-01 15 33952555 33952555 G A RYR3 Missense_Mutation p.R1518H 0.94 benign(0.225) TCGA-A6-5662-01 15 55965785 55965785 G A PRTG Missense_Mutation p.R546W 0.16 deleterious(0) probably_damaging(1) TCGA-A6-5662-01 16 64982622 64982622 G T CDH11 Intron 0.43 TCGA-A6-5662-01 16 767329 767329 G A METRN Missense_Mutation p.R275H 0.33 tolerated(0.05) benign(0.06) TCGA-A6-5662-01 16 81145836 81145836 G A PKD1L2 RNA 0.54 TCGA-A6-5662-01 16 88945758 88945758 C G CBFA2T3 Missense_Mutation p.E528Q 0.47 deleterious(0) probably_damaging(0.969) TCGA-A6-5662-01 17 1840608 1840608 C T RTN4RL1 Missense_Mutation p.V170M 0.09 tolerated(0.16) benign(0.072) TCGA-A6-5662-01 17 2237778 2237778 G A TSR1 Silent p.D323D 0.42 TCGA-A6-5662-01 17 38711505 38711505 C T CCR7 Missense_Mutation p.R209Q 0.48 tolerated(0.36) possibly_damaging(0.787) TCGA-A6-5662-01 17 38953513 38953513 G A KRT28 Silent p.C237C 0.46 TCGA-A6-5662-01 17 39671765 39671767 CTC - KRT15 In_Frame_Del p.E402del 0.25 TCGA-A6-5662-01 17 7579368 7579368 A C TP53 Missense_Mutation p.Y107D 0.93 deleterious(0.01) probably_damaging(0.988) TCGA-A6-5662-01 17 76492089 76492089 C T DNAH17 Missense_Mutation p.R1910Q 0.41 probably_damaging(0.923) TCGA-A6-5662-01 18 57103329 57103329 G T CCBE1 Missense_Mutation p.D344E 0.86 tolerated(0.05) benign(0.025) TCGA-A6-5662-01 18 7955390 7955390 C T PTPRM Silent p.L370L 0.18 TCGA-A6-5662-01 19 14288365 14288365 C T LPHN1 Missense_Mutation p.A88T 0.42 deleterious(0) probably_damaging(0.951) TCGA-A6-5662-01 19 31768321 31768321 G T TSHZ3 Missense_Mutation p.T793K 0.48 deleterious(0) probably_damaging(0.982) TCGA-A6-5662-01 19 51192225 51192225 G A SHANK1 Missense_Mutation p.A683V 0.44 benign(0.035) TCGA-A6-5662-01 19 52132769 52132769 G A SIGLEC5 Missense_Mutation p.T181M 0.47 tolerated(0.15) benign(0.019) TCGA-A6-5662-01 1 101188606 101188606 G A VCAM1 Missense_Mutation p.S124N 0.81 tolerated(0.11) benign(0.024) TCGA-A6-5662-01 1 118629516 118629516 C T SPAG17 Missense_Mutation p.C492Y 0.75 tolerated(0.05) probably_damaging(0.999) TCGA-A6-5662-01 1 142634931 142634931 C T RP11-417J8.6 RNA 0.43 TCGA-A6-5662-01 1 15723919 15723919 G A FHAD1 3'UTR 0.53 TCGA-A6-5662-01 1 158298725 158298725 C A CD1B Missense_Mutation p.W322C 0.43 deleterious(0.03) benign(0.035) TCGA-A6-5662-01 1 1846613 1846613 T C CALML6 5'UTR 0.38 TCGA-A6-5662-01 1 207785157 207785157 C T CR1 Missense_Mutation p.T2144M 0.49 tolerated(0.08) possibly_damaging(0.785) TCGA-A6-5662-01 1 54605465 54605465 T C CDCP2 Missense_Mutation p.S360G 0.08 deleterious(0.01) possibly_damaging(0.714) TCGA-A6-5662-01 20 55213255 55213255 G A TFAP2C 3'UTR 0.50 TCGA-A6-5662-01 20 62871774 62871774 G A MYT1 Silent p.K1113K 0.69 TCGA-A6-5662-01 21 11098821 11098821 C T BAGE2 RNA 0.19 TCGA-A6-5662-01 21 30961328 30961328 T A GRIK1 Missense_Mutation p.K467M 0.81 deleterious(0.03) possibly_damaging(0.868) TCGA-A6-5662-01 21 47360027 47360027 C T PCBP3 Silent p.N331N 0.81 TCGA-A6-5662-01 2 101675953 101675953 T C TBC1D8 Missense_Mutation p.N96S 0.06 deleterious(0) probably_damaging(0.997) TCGA-A6-5662-01 2 136570340 136570340 C A LCT Missense_Mutation p.A632S 0.50 deleterious(0) probably_damaging(1) TCGA-A6-5662-01 2 141598569 141598569 C T LRP1B Missense_Mutation p.A1678T 0.40 possibly_damaging(0.483) TCGA-A6-5662-01 2 176973885 176973885 G A HOXD11 3'UTR 0.38 TCGA-A6-5662-01 2 215279104 215279104 T C VWC2L Silent p.L63L 0.11 TCGA-A6-5662-01 2 219893086 219893086 G A CCDC108 Missense_Mutation p.S563L 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-A6-5662-01 2 31416101 31416101 G T CAPN14 Missense_Mutation p.P337Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-A6-5662-01 3 118623559 118623559 C T IGSF11 Missense_Mutation p.A264T 0.36 tolerated(0.75) benign(0.002) TCGA-A6-5662-01 3 130289671 130289671 G A COL6A6 Missense_Mutation p.R804Q 0.43 deleterious(0.02) probably_damaging(0.988) TCGA-A6-5662-01 3 183861952 183861952 G A EIF2B5 Silent p.A645A 0.46 TCGA-A6-5662-01 3 97887716 97887716 C T OR5H15 Missense_Mutation p.P58L 0.42 deleterious(0) probably_damaging(0.946) TCGA-A6-5662-01 4 122766847 122766847 C T BBS7 Missense_Mutation p.E348K 0.06 tolerated(0.05) possibly_damaging(0.621) TCGA-A6-5662-01 4 134072114 134072114 C A PCDH10 Missense_Mutation p.N273K 0.48 deleterious(0) possibly_damaging(0.851) TCGA-A6-5662-01 4 2272535 2272535 C T ZFYVE28 Missense_Mutation p.G861R 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5662-01 4 30723945 30723945 G A PCDH7 Missense_Mutation p.V301M 0.09 tolerated(0.18) probably_damaging(0.927) TCGA-A6-5662-01 4 6107413 6107413 G A JAKMIP1 Silent p.R137R 0.29 TCGA-A6-5662-01 5 112175255 112175255 G T APC Nonsense_Mutation p.E1322* 0.88 TCGA-A6-5662-01 5 136476320 136476320 G A SPOCK1 Missense_Mutation p.T99I 0.44 deleterious(0.02) possibly_damaging(0.497) TCGA-A6-5662-01 5 140559212 140559212 G A PCDHB8 Missense_Mutation p.G533S 0.36 deleterious_low_confidence(0.04) benign(0.042) TCGA-A6-5662-01 5 140740470 140740470 G A PCDHGB2 Silent p.P256P 0.09 TCGA-A6-5662-01 5 140783858 140783858 G C PCDHGA9 Missense_Mutation p.D447H 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A6-5662-01 5 149428234 149428235 - TGTGCC HMGXB3 In_Frame_Ins p.C1064_P1065insLC 0.35 TCGA-A6-5662-01 5 31299653 31299653 C T CDH6 Silent p.G242G 0.46 TCGA-A6-5662-01 6 111688984 111688984 G A REV3L Nonsense_Mutation p.R2003* 0.13 TCGA-A6-5662-01 6 121768327 121768327 G A GJA1 Missense_Mutation p.E112K 0.48 tolerated(0.22) benign(0.007) TCGA-A6-5662-01 6 146956615 146956615 A G ADGB Missense_Mutation p.K60R 0.43 deleterious(0) probably_damaging(0.998) TCGA-A6-5662-01 6 34803213 34803213 G A UHRF1BP1 Missense_Mutation p.R271K 0.49 deleterious(0.01) probably_damaging(0.913) TCGA-A6-5662-01 6 73110324 73110324 T A RIMS1 Missense_Mutation p.S1663T 0.05 deleterious(0) possibly_damaging(0.908) TCGA-A6-5662-01 6 73751701 73751701 C T KCNQ5 Nonsense_Mutation p.R178* 0.46 TCGA-A6-5662-01 7 101188667 101188667 G A COL26A1 Missense_Mutation p.R251H 0.50 tolerated(0.59) benign(0.059) TCGA-A6-5662-01 7 128355468 128355468 T C FAM71F1 5'UTR 0.10 TCGA-A6-5662-01 7 134613560 134613560 C T CALD1 Missense_Mutation p.R43C 0.31 deleterious(0) unknown(0) TCGA-A6-5662-01 7 1482109 1482109 G A MICALL2 Missense_Mutation p.A477V 0.09 tolerated(0.23) benign(0.01) TCGA-A6-5662-01 7 22532994 22532994 G A STEAP1B Silent p.Y182Y 0.51 TCGA-A6-5662-01 7 74539062 74539062 C T GTF2IRD2B Missense_Mutation p.L162F 0.08 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-A6-5662-01 8 71071783 71071783 T C NCOA2 Missense_Mutation p.T361A 0.50 deleterious(0.02) possibly_damaging(0.507) TCGA-A6-5662-01 8 77767191 77767191 G A ZFHX4 Silent p.P2678P 0.38 TCGA-A6-5662-01 8 92998413 92998413 G A RUNX1T1 Silent p.G417G 0.34 TCGA-A6-5662-01 9 72365713 72365713 T - PTAR1 Frame_Shift_Del p.Q80Hfs*3 0.30 TCGA-A6-5662-01 9 84606550 84606550 T A SPATA31D1 Missense_Mutation p.F389I 0.46 tolerated(0.33) benign(0.113) TCGA-A6-5662-01 9 96411465 96411465 C T PHF2 Silent p.N191N 0.59 TCGA-A6-5662-01 X 123217389 123217389 A - STAG2 Frame_Shift_Del p.R1016Efs*11 0.50 TCGA-A6-5662-01 X 155010502 155010502 A T SPRY3 3'UTR 0.33 TCGA-A6-5664-01 10 48390290 48390290 C A RBP3 Silent p.V196V 0.12 TCGA-A6-5664-01 11 119050923 119050923 C G NLRX1 Missense_Mutation p.N731K 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-A6-5664-01 11 64976835 64976835 C T CAPN1 Missense_Mutation p.R591C 0.18 deleterious(0) probably_damaging(0.982) TCGA-A6-5664-01 11 65688885 65688885 C T DRAP1 Silent p.D199D 0.23 TCGA-A6-5664-01 11 77632421 77632421 G A INTS4 Nonsense_Mutation p.R577* 0.09 TCGA-A6-5664-01 11 92526044 92526044 G T FAT3 Missense_Mutation p.V1575L 0.11 benign(0.279) TCGA-A6-5664-01 12 12940317 12940317 T C APOLD1 Missense_Mutation p.S191P 0.09 deleterious(0.01) benign(0.368) TCGA-A6-5664-01 12 133318025 133318025 C T ANKLE2 Missense_Mutation p.R467Q 0.14 tolerated(0.23) benign(0.103) TCGA-A6-5664-01 12 25380276 25380276 T C KRAS Missense_Mutation p.Q61R 0.38 tolerated(0.06) benign(0.374) TCGA-A6-5664-01 12 49088032 49088032 T C CCNT1 Missense_Mutation p.N322S 0.15 tolerated(0.62) benign(0.004) TCGA-A6-5664-01 12 55356448 55356448 C A TESPA1 Nonsense_Mutation p.E412* 0.16 TCGA-A6-5664-01 13 50141334 50141334 C T RCBTB1 Missense_Mutation p.G28S 0.14 deleterious(0.03) probably_damaging(0.964) TCGA-A6-5664-01 13 99092983 99092983 C T FARP1 Missense_Mutation p.R897C 0.21 deleterious(0.01) possibly_damaging(0.836) TCGA-A6-5664-01 14 45711670 45711670 C T MIS18BP1 Missense_Mutation p.R237Q 0.19 deleterious(0.03) benign(0) TCGA-A6-5664-01 14 55819756 55819756 T C FBXO34 3'UTR 0.20 TCGA-A6-5664-01 14 69522133 69522133 G A DCAF5 Missense_Mutation p.R424C 0.21 deleterious(0) probably_damaging(0.929) TCGA-A6-5664-01 14 86087984 86087984 C T FLRT2 Silent p.C42C 0.10 TCGA-A6-5664-01 15 100230614 100230614 A G MEF2A Missense_Mutation p.K282R 0.10 deleterious(0.02) probably_damaging(0.953) TCGA-A6-5664-01 16 21133305 21133305 A G DNAH3 Silent p.S515S 0.09 TCGA-A6-5664-01 16 30408769 30408769 T G ZNF48 Silent p.S66S 0.26 TCGA-A6-5664-01 16 31091384 31091384 A G ZNF646 Missense_Mutation p.N1247D 0.25 deleterious(0) probably_damaging(0.988) TCGA-A6-5664-01 16 9858381 9858381 T C GRIN2A Missense_Mutation p.N1007S 0.15 tolerated(0.16) benign(0.016) TCGA-A6-5664-01 17 10406388 10406388 C A MYH1 Missense_Mutation p.D957Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-A6-5664-01 17 3491600 3491600 T C SHPK Missense_Mutation p.K369R 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-A6-5664-01 17 37618596 37618596 T C CDK12 Missense_Mutation p.L91P 0.08 unknown(0) TCGA-A6-5664-01 17 39998500 39998500 T C KLHL10 Missense_Mutation p.I207T 0.09 deleterious(0.01) possibly_damaging(0.836) TCGA-A6-5664-01 17 61557829 61557829 C T ACE Missense_Mutation p.H263Y 0.29 tolerated(0.98) benign(0.024) TCGA-A6-5664-01 17 9808240 9808240 G A RCVRN Silent p.Y86Y 0.20 TCGA-A6-5664-01 18 48591855 48591855 A G SMAD4 Missense_Mutation p.K340E 0.14 deleterious(0) probably_damaging(0.995) TCGA-A6-5664-01 19 38916739 38916739 G A RASGRP4 5'UTR 0.33 TCGA-A6-5664-01 19 38989806 38989806 G T RYR1 Missense_Mutation p.G2317V 0.12 benign(0.117) TCGA-A6-5664-01 19 5778513 5778513 C A CATSPERD Nonsense_Mutation p.Y741* 0.19 TCGA-A6-5664-01 19 9060014 9060014 G A MUC16 Silent p.A9144A 0.08 TCGA-A6-5664-01 1 12776286 12776286 C T AADACL3 5'UTR 0.19 TCGA-A6-5664-01 1 158906751 158906751 C A PYHIN1 Silent p.I17I 0.21 TCGA-A6-5664-01 1 166818420 166818420 G A POGK Missense_Mutation p.A202T 0.11 tolerated(0.1) probably_damaging(0.993) TCGA-A6-5664-01 1 180006125 180006125 C T CEP350 Silent p.N1337N 0.11 TCGA-A6-5664-01 1 248550980 248550980 C T OR2T6 Missense_Mutation p.S24L 0.12 tolerated(0.07) benign(0.009) TCGA-A6-5664-01 1 26863453 26863453 C T RPS6KA1 Missense_Mutation p.P34L 0.18 tolerated(0.24) benign(0.002) TCGA-A6-5664-01 1 71478001 71478001 C A PTGER3 Missense_Mutation p.R355L 0.15 deleterious(0) possibly_damaging(0.644) TCGA-A6-5664-01 20 31676821 31676821 G A BPIFB4 Missense_Mutation p.V326I 0.21 deleterious(0.04) benign(0.36) TCGA-A6-5664-01 20 47864495 47864495 A G ZNFX1 Missense_Mutation p.L1689P 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-5664-01 2 128712754 128712754 G A SAP130 Missense_Mutation p.P769L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-A6-5664-01 2 220346095 220346095 C T SPEG Silent p.N1813N 0.11 TCGA-A6-5664-01 2 68607913 68607913 T C PLEK Missense_Mutation p.L86P 0.09 tolerated(0.08) probably_damaging(0.971) TCGA-A6-5664-01 3 123376182 123376182 C T MYLK Missense_Mutation p.G1360D 0.17 deleterious(0) possibly_damaging(0.476) TCGA-A6-5664-01 3 196613383 196613383 A G SENP5 Missense_Mutation p.E444G 0.15 tolerated(0.26) probably_damaging(0.997) TCGA-A6-5664-01 3 33255423 33255423 A G SUSD5 Missense_Mutation p.L96P 0.09 deleterious(0.01) probably_damaging(0.989) TCGA-A6-5664-01 3 42906212 42906212 G A ACKR2 Missense_Mutation p.R73H 0.20 tolerated(0.51) benign(0.027) TCGA-A6-5664-01 3 49831349 49831349 G A CDHR4 Missense_Mutation p.A457V 0.16 tolerated(0.27) benign(0.002) TCGA-A6-5664-01 4 108552863 108552863 T C PAPSS1 Missense_Mutation p.T554A 0.12 tolerated(0.19) benign(0) TCGA-A6-5664-01 4 147561088 147561088 G A POU4F2 Missense_Mutation p.V120I 0.18 tolerated_low_confidence(0.08) possibly_damaging(0.796) TCGA-A6-5664-01 4 15569352 15569352 C T CC2D2A Missense_Mutation p.T1114M 0.24 deleterious(0) probably_damaging(0.968) TCGA-A6-5664-01 4 16165000 16165000 T - TAPT1 Frame_Shift_Del p.K545Nfs*10 0.12 TCGA-A6-5664-01 4 165962218 165962218 A T TRIM60 Nonsense_Mutation p.R332* 0.09 TCGA-A6-5664-01 4 165962220 165962220 A T TRIM60 Missense_Mutation p.R332S 0.10 deleterious(0) probably_damaging(0.966) TCGA-A6-5664-01 4 70721046 70721046 C G SULT1E1 Missense_Mutation p.E82Q 0.12 deleterious(0) probably_damaging(1) TCGA-A6-5664-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.15 TCGA-A6-5664-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.18 TCGA-A6-5664-01 5 127516687 127516687 G A SLC12A2 Splice_Site p.X1071_splice 0.10 TCGA-A6-5664-01 5 1282563 1282563 A G TERT Silent p.L584L 0.08 TCGA-A6-5664-01 5 13776634 13776634 C T DNAH5 Missense_Mutation p.R3096Q 0.18 possibly_damaging(0.553) TCGA-A6-5664-01 5 140250862 140250862 C T PCDHA11 Missense_Mutation p.T725M 0.25 tolerated_low_confidence(0.07) benign(0.002) TCGA-A6-5664-01 5 140563724 140563724 C T PCDHB16 Silent p.R530R 0.15 TCGA-A6-5664-01 5 40928737 40928737 G A C7 Missense_Mutation p.S21N 0.15 tolerated(0.11) benign(0.064) TCGA-A6-5664-01 5 68715460 68715460 C T MARVELD2 Missense_Mutation p.P83L 0.08 deleterious(0) probably_damaging(1) TCGA-A6-5664-01 6 132198194 132198194 A G ENPP1 Missense_Mutation p.K596E 0.08 deleterious(0) possibly_damaging(0.493) TCGA-A6-5664-01 6 36507890 36507890 A G STK38 Silent p.F30F 0.16 TCGA-A6-5664-01 6 38998067 38998067 C T DNAH8 Nonsense_Mutation p.R4458* 0.20 TCGA-A6-5664-01 6 56882085 56882085 T G BEND6 Silent p.L200L 0.20 TCGA-A6-5664-01 7 102953022 102953022 C A DNAJC2 Missense_Mutation p.K620N 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-A6-5664-01 7 137801371 137801371 G A AKR1D1 Missense_Mutation p.R315H 0.17 tolerated(0.14) benign(0.046) TCGA-A6-5664-01 7 19738155 19738155 C T TWISTNB Silent p.A267A 0.21 TCGA-A6-5664-01 7 66103854 66103854 C A KCTD7 Missense_Mutation p.A112E 0.17 tolerated_low_confidence(0.06) benign(0.077) TCGA-A6-5664-01 8 145616372 145616372 C G ADCK5 Silent p.P194P 0.32 TCGA-A6-5664-01 8 42868256 42868256 A C HOOK3 Missense_Mutation p.K634N 0.11 deleterious(0) probably_damaging(0.998) TCGA-A6-5664-01 9 130950183 130950183 G A CIZ1 Missense_Mutation p.T106M 0.15 tolerated_low_confidence(0.07) benign(0.006) TCGA-A6-5664-01 9 34990752 34990752 T C DNAJB5 Missense_Mutation p.I84T 0.24 deleterious_low_confidence(0) benign(0.038) TCGA-A6-5664-01 X 111020033 111020033 C T TRPC5 Silent p.G810G 0.33 TCGA-A6-5664-01 X 49067848 49067849 CT - CACNA1F Frame_Shift_Del p.E1409Vfs*5 0.19 TCGA-A6-5665-01 10 101514390 101514390 C T CUTC Nonsense_Mutation p.R236* 0.30 TCGA-A6-5665-01 10 102587324 102587324 C - PAX2 Frame_Shift_Del p.R403Gfs*37 0.41 TCGA-A6-5665-01 10 102721712 102721712 T C FAM178A 3'Flank 0.35 TCGA-A6-5665-01 10 102737440 102737440 C T SEMA4G Missense_Mutation p.L130F 0.33 deleterious(0.03) benign(0.05) TCGA-A6-5665-01 10 103291027 103291027 C T BTRC Silent p.D259D 0.31 TCGA-A6-5665-01 10 104176782 104176782 G A PSD Missense_Mutation p.A5V 0.44 tolerated_low_confidence(0.17) benign(0.068) TCGA-A6-5665-01 10 104557825 104557825 T C WBP1L Missense_Mutation p.C56R 0.32 deleterious(0.03) possibly_damaging(0.498) TCGA-A6-5665-01 10 104590500 104590500 G A CYP17A1 Missense_Mutation p.R496C 0.31 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 10 104849519 104849519 T C NT5C2 Silent p.K532K 0.36 TCGA-A6-5665-01 10 105203783 105203783 C T PDCD11 Missense_Mutation p.R1746C 0.29 deleterious(0.03) benign(0.035) TCGA-A6-5665-01 10 105815736 105815736 C T COL17A1 Silent p.A497A 0.38 TCGA-A6-5665-01 10 108447983 108447983 C T SORCS1 Silent p.T509T 0.25 TCGA-A6-5665-01 10 111883838 111883838 G T ADD3 Missense_Mutation p.D403Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-A6-5665-01 10 116046093 116046093 G T VWA2 Missense_Mutation p.A465S 0.52 tolerated(0.14) benign(0.379) TCGA-A6-5665-01 10 116050092 116050092 G A VWA2 3'Flank 0.43 TCGA-A6-5665-01 10 117856214 117856214 G T GFRA1 Missense_Mutation p.L278I 0.36 tolerated(0.44) benign(0.392) TCGA-A6-5665-01 10 118434372 118434372 C - HSPA12A Frame_Shift_Del p.D650Tfs*11 0.25 TCGA-A6-5665-01 10 118893630 118893630 C T VAX1 Silent p.S298S 0.41 TCGA-A6-5665-01 10 11894164 11894164 G A PROSER2 Missense_Mutation p.G30S 0.37 tolerated(0.08) possibly_damaging(0.453) TCGA-A6-5665-01 10 11990443 11990443 T A UPF2 Missense_Mutation p.E1033D 0.32 tolerated(0.62) benign(0.001) TCGA-A6-5665-01 10 120354176 120354176 G A PRLHR Missense_Mutation p.A194V 0.42 deleterious(0.01) benign(0.206) TCGA-A6-5665-01 10 120514246 120514246 C T CACUL1 Missense_Mutation p.G10E 0.40 tolerated_low_confidence(0.23) unknown(0) TCGA-A6-5665-01 10 121259660 121259660 C T RGS10 Missense_Mutation p.A171T 0.30 tolerated(0.16) benign(0.085) TCGA-A6-5665-01 10 124457359 124457359 C A C10orf120 Missense_Mutation p.D300Y 0.31 deleterious(0) probably_damaging(0.983) TCGA-A6-5665-01 10 1246063 1246063 G A ADARB2 Silent p.G569G 0.18 TCGA-A6-5665-01 10 127737879 127737879 G A ADAM12 Silent p.G623G 0.43 TCGA-A6-5665-01 10 128193374 128193374 C - C10orf90 Frame_Shift_Del p.G132Afs*76 0.31 TCGA-A6-5665-01 10 129160464 129160464 A G DOCK1 Silent p.R1119R 0.32 TCGA-A6-5665-01 10 131639295 131639295 G A EBF3 Silent p.V449V 0.33 TCGA-A6-5665-01 10 133106645 133106646 - A TCERG1L Frame_Shift_Ins p.N167* 0.21 TCGA-A6-5665-01 10 13344024 13344024 T - PHYH 5'Flank 0.29 TCGA-A6-5665-01 10 133769499 133769499 G A PPP2R2D 3'UTR 0.38 TCGA-A6-5665-01 10 133795284 133795284 C A BNIP3 Missense_Mutation p.M9I 0.40 tolerated_low_confidence(0.2) benign(0) TCGA-A6-5665-01 10 134017316 134017316 C T DPYSL4 Silent p.H504H 0.39 TCGA-A6-5665-01 10 134622134 134622134 A G TTC40 Missense_Mutation p.S2647P 0.31 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-A6-5665-01 10 134622201 134622201 C T TTC40 Silent p.P2624P 0.46 TCGA-A6-5665-01 10 135020787 135020787 C T KNDC1 Silent p.G1242G 0.34 TCGA-A6-5665-01 10 135045024 135045024 G A UTF1 3'UTR 0.56 TCGA-A6-5665-01 10 14987093 14987143 ATAAAACTTACAATTCGTTTCTTCCAAAATCTGTATTTCGGGCTCGTTAAC TAAAACTTACAATTCGTTTCTTCCAAAATCTGTATTTCGGGCTCGTT DCLRE1C Splice_Site p.X69_splice 0.15 TCGA-A6-5665-01 10 14987141 14987143 AAC - DCLRE1C In_Frame_Del p.L70del 0.31 TCGA-A6-5665-01 10 15138285 15138285 C A C10orf111 3'UTR 0.40 TCGA-A6-5665-01 10 16562710 16562710 C T C1QL3 Missense_Mutation p.A119T 0.35 tolerated(0.15) benign(0.126) TCGA-A6-5665-01 10 22680655 22680655 C A SPAG6 Intron 0.33 TCGA-A6-5665-01 10 25138652 25138652 T - PRTFDC1 3'UTR 0.30 TCGA-A6-5665-01 10 25313872 25313872 C T THNSL1 Nonsense_Mutation p.R574* 0.35 TCGA-A6-5665-01 10 25464649 25464649 C T GPR158 Silent p.S100S 0.33 TCGA-A6-5665-01 10 27459882 27459882 C A MASTL Missense_Mutation p.S665Y 0.36 deleterious(0) possibly_damaging(0.905) TCGA-A6-5665-01 10 29779850 29779852 TCT - SVIL In_Frame_Del p.E1372del 0.27 TCGA-A6-5665-01 10 3149418 3149418 A - PFKP Frame_Shift_Del p.R265Gfs*2 0.28 TCGA-A6-5665-01 10 32557933 32557933 T C EPC1 3'UTR 0.34 TCGA-A6-5665-01 10 32800462 32800462 A T CCDC7 Intron 0.42 TCGA-A6-5665-01 10 38242637 38242637 T G ZNF25 Missense_Mutation p.Q96H 0.37 tolerated(0.2) benign(0.166) TCGA-A6-5665-01 10 43014812 43014812 A - ZNF37BP RNA 0.32 TCGA-A6-5665-01 10 43315866 43315866 C T BMS1 Silent p.Y921Y 0.24 TCGA-A6-5665-01 10 43650710 43650710 C T CSGALNACT2 Missense_Mutation p.T38I 0.06 tolerated(0.4) possibly_damaging(0.467) TCGA-A6-5665-01 10 45495767 45495767 T C C10orf25 3'UTR 0.32 TCGA-A6-5665-01 10 45500068 45500068 T C ZNF22 3'UTR 0.33 TCGA-A6-5665-01 10 46265004 46265005 - A FAM21C Frame_Shift_Ins p.T662Dfs*5 0.27 TCGA-A6-5665-01 10 48413860 48413860 G A GDF2 Silent p.F336F 0.48 TCGA-A6-5665-01 10 49628298 49628298 C T MAPK8 Missense_Mutation p.P184L 0.06 tolerated(0.05) probably_damaging(0.926) TCGA-A6-5665-01 10 50081622 50081622 G - WDFY4 Frame_Shift_Del p.E2278Kfs*20 0.31 TCGA-A6-5665-01 10 50316030 50316030 C T VSTM4 Silent p.A22A 0.42 TCGA-A6-5665-01 10 5032062 5032062 A G AKR1C2 3'UTR 0.34 TCGA-A6-5665-01 10 50679049 50679049 C A ERCC6 Missense_Mutation p.Q1014H 0.38 tolerated(0.11) benign(0.248) TCGA-A6-5665-01 10 50818845 50818845 C A SLC18A3 Missense_Mutation p.A20D 0.36 tolerated(0.35) benign(0.028) TCGA-A6-5665-01 10 50819727 50819727 C T SLC18A3 Missense_Mutation p.T314M 0.24 tolerated(0.18) benign(0.153) TCGA-A6-5665-01 10 50820680 50820680 C T SLC18A3 3'UTR 0.39 TCGA-A6-5665-01 10 50822360 50822360 G A CHAT Missense_Mutation p.R42H 0.34 deleterious_low_confidence(0) unknown(0) TCGA-A6-5665-01 10 51579212 51579212 G A NCOA4 Missense_Mutation p.R40Q 0.35 tolerated(0.26) benign(0.054) TCGA-A6-5665-01 10 52103409 52103409 C A SGMS1 Missense_Mutation p.V156F 0.31 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 10 5247767 5247767 C T AKR1C4 Silent p.F139F 0.40 TCGA-A6-5665-01 10 53457985 53457985 G A CSTF2T Missense_Mutation p.A442V 0.30 tolerated_low_confidence(0.28) benign(0.17) TCGA-A6-5665-01 10 54074797 54074797 C T DKK1 Missense_Mutation p.R120C 0.40 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 10 5541144 5541144 G T CALML5 Silent p.A86A 0.42 TCGA-A6-5665-01 10 61719381 61719381 T C C10orf40 5'UTR 0.33 TCGA-A6-5665-01 10 61823946 61823946 T - ANK3 Frame_Shift_Del p.K4140Nfs*15 0.27 TCGA-A6-5665-01 10 62551697 62551697 G A CDK1 Missense_Mutation p.R180H 0.36 tolerated(0.68) possibly_damaging(0.876) TCGA-A6-5665-01 10 70182051 70182051 A G DNA2 Silent p.Y962Y 0.38 TCGA-A6-5665-01 10 70404809 70404809 A - TET1 Frame_Shift_Del p.K776Nfs*19 0.31 TCGA-A6-5665-01 10 70406652 70406652 A G TET1 Missense_Mutation p.D1389G 0.29 tolerated(0.1) benign(0.169) TCGA-A6-5665-01 10 70441157 70441157 A - TET1 Frame_Shift_Del p.N1611Tfs*13 0.26 TCGA-A6-5665-01 10 70446399 70446399 G A TET1 Missense_Mutation p.R1780Q 0.39 tolerated(0.47) benign(0.119) TCGA-A6-5665-01 10 70748991 70748992 - TC KIAA1279 Frame_Shift_Ins p.C138Sfs*26 0.26 TCGA-A6-5665-01 10 71154812 71154812 C A HK1 Missense_Mutation p.L780M 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-A6-5665-01 10 71718520 71718520 T - COL13A1 3'UTR 0.24 TCGA-A6-5665-01 10 71973318 71973318 C T PPA1 Missense_Mutation p.V138M 0.33 deleterious(0.01) possibly_damaging(0.874) TCGA-A6-5665-01 10 73562804 73562804 G T CDH23 Missense_Mutation p.L304F 0.38 deleterious(0.01) benign(0.297) TCGA-A6-5665-01 10 73767916 73767916 G A CHST3 Missense_Mutation p.R376H 0.48 deleterious(0.01) possibly_damaging(0.906) TCGA-A6-5665-01 10 75107952 75107952 G A TTC18 Nonsense_Mutation p.Q131* 0.38 TCGA-A6-5665-01 10 75607015 75607015 C T CAMK2G Missense_Mutation p.A263T 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A6-5665-01 10 7618969 7618969 G A ITIH5 Silent p.Y475Y 0.35 TCGA-A6-5665-01 10 76790712 76790712 G A KAT6B Missense_Mutation p.G2044S 0.18 benign(0.002) TCGA-A6-5665-01 10 78646919 78646919 A G KCNMA1 3'Flank 0.32 TCGA-A6-5665-01 10 81037008 81037008 C T ZMIZ1 Silent p.S117S 0.32 TCGA-A6-5665-01 10 8111458 8111458 C T GATA3 Missense_Mutation p.T316M 0.41 deleterious(0) possibly_damaging(0.782) TCGA-A6-5665-01 10 8115837 8115837 G A GATA3 Missense_Mutation p.A396T 0.39 tolerated(0.07) benign(0.023) TCGA-A6-5665-01 10 83635729 83635729 G T NRG3 Silent p.P211P 0.44 TCGA-A6-5665-01 10 85955283 85955283 A G CDHR1 Missense_Mutation p.N30S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-A6-5665-01 10 85994009 85994009 C T LRIT1 Missense_Mutation p.A239T 0.36 tolerated(0.06) probably_damaging(0.945) TCGA-A6-5665-01 10 86008714 86008714 C T RGR Silent p.H95H 0.40 TCGA-A6-5665-01 10 86008738 86008738 G A RGR Silent p.A103A 0.31 TCGA-A6-5665-01 10 88220930 88220930 T C WAPAL Intron 0.36 TCGA-A6-5665-01 10 88769386 88769386 C T RP11-96C23.10 3'Flank 0.26 TCGA-A6-5665-01 10 88988316 88988316 G C NUTM2A Missense_Mutation p.A227P 0.15 tolerated(0.1) probably_damaging(0.968) TCGA-A6-5665-01 10 89118050 89118050 A T NUTM2D Missense_Mutation p.I10F 0.18 tolerated_low_confidence(0.78) benign(0) TCGA-A6-5665-01 10 94836956 94836956 T C CYP26A1 Silent p.C463C 0.35 TCGA-A6-5665-01 10 95347143 95347143 T C FFAR4 Missense_Mutation p.L304P 0.31 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 10 95993933 95993933 G A PLCE1 Missense_Mutation p.R693H 0.40 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 10 96341265 96341265 T C HELLS Silent p.F405F 0.31 TCGA-A6-5665-01 10 97583001 97583001 C T ENTPD1 Silent p.N20N 0.27 TCGA-A6-5665-01 11 100819202 100819202 C T ARHGAP42 Missense_Mutation p.T353M 0.35 deleterious(0) possibly_damaging(0.487) TCGA-A6-5665-01 11 1011145 1011145 G T AP2A2 3'UTR 0.38 TCGA-A6-5665-01 11 101815099 101815099 T A KIAA1377 Missense_Mutation p.F118I 0.37 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 11 103907509 103907509 C T DDI1 5'UTR 0.20 TCGA-A6-5665-01 11 10649554 10649554 C T MRVI1 Missense_Mutation p.G224D 0.38 tolerated(0.11) benign(0.012) TCGA-A6-5665-01 11 107673877 107673877 C A SLC35F2 Silent p.L263L 0.33 TCGA-A6-5665-01 11 10785304 10785304 G A CTR9 Missense_Mutation p.E358K 0.07 deleterious(0.01) benign(0.157) TCGA-A6-5665-01 11 10789628 10789628 G A CTR9 Missense_Mutation p.R627H 0.34 deleterious(0) probably_damaging(0.98) TCGA-A6-5665-01 11 10795708 10795710 GAG - CTR9 In_Frame_Del p.R962del 0.38 TCGA-A6-5665-01 11 108032092 108032092 A G NPAT Silent p.L1241L 0.35 TCGA-A6-5665-01 11 108117799 108117799 G A ATM Missense_Mutation p.R337H 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-A6-5665-01 11 108186574 108186574 A G ATM Missense_Mutation p.S2011G 0.45 deleterious(0.01) probably_damaging(0.925) TCGA-A6-5665-01 11 1082351 1082355 CTCGG - MUC2 Frame_Shift_Del p.S603Cfs*5 0.40 TCGA-A6-5665-01 11 1104274 1104274 C T MUC2 3'UTR 0.40 TCGA-A6-5665-01 11 111782467 111782468 - G CRYAB 5'UTR 0.33 TCGA-A6-5665-01 11 113076266 113076266 C T NCAM1 Missense_Mutation p.A182V 0.38 tolerated(0.61) possibly_damaging(0.562) TCGA-A6-5665-01 11 114453358 114453358 C A NXPE4 Missense_Mutation p.G161V 0.33 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 11 115102201 115102201 C T CADM1 Missense_Mutation p.R145H 0.36 tolerated(0.07) benign(0.017) TCGA-A6-5665-01 11 1156639 1156639 T G MUC5AC Missense_Mutation p.V219G 0.35 tolerated(0.44) benign(0) TCGA-A6-5665-01 11 116707832 116707832 G - APOA1 Frame_Shift_Del p.Q29Rfs*7 0.33 TCGA-A6-5665-01 11 117049955 117049955 C A SIDT2 5'UTR 0.28 TCGA-A6-5665-01 11 117389306 117389306 G A DSCAML1 Missense_Mutation p.S522L 0.42 tolerated(0.4) benign(0.396) TCGA-A6-5665-01 11 118766399 118766399 A C BCL9L 3'UTR 0.28 TCGA-A6-5665-01 11 118827946 118827946 G - UPK2 Frame_Shift_Del p.C80Afs*8 0.30 TCGA-A6-5665-01 11 119043127 119043127 C - NLRX1 Frame_Shift_Del p.P46Lfs*12 0.30 TCGA-A6-5665-01 11 119045327 119045327 G A NLRX1 Missense_Mutation p.G339S 0.31 tolerated(0.32) benign(0.004) TCGA-A6-5665-01 11 119216290 119216290 G T MFRP Missense_Mutation p.P161T 0.33 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 11 119216591 119216591 C A MFRP Missense_Mutation p.A107S 0.33 tolerated(0.32) benign(0.004) TCGA-A6-5665-01 11 120352054 120352054 C A ARHGEF12 Silent p.P1441P 0.34 TCGA-A6-5665-01 11 121032949 121032949 C T TECTA Silent p.Y1714Y 0.08 TCGA-A6-5665-01 11 121426011 121426011 G A SORL1 Missense_Mutation p.G852D 0.36 tolerated(0.06) probably_damaging(0.977) TCGA-A6-5665-01 11 123524568 123524568 G A SCN3B 5'UTR 0.26 TCGA-A6-5665-01 11 123753910 123753910 G A TMEM225 Missense_Mutation p.R205C 0.39 tolerated(0.05) possibly_damaging(0.876) TCGA-A6-5665-01 11 123886347 123886347 C T OR10G4 Silent p.D22D 0.33 TCGA-A6-5665-01 11 124751212 124751212 C T ROBO3 3'UTR 0.26 TCGA-A6-5665-01 11 125871642 125871642 T C CDON Silent p.V710V 0.35 TCGA-A6-5665-01 11 1267795 1267795 G A MUC5B Missense_Mutation p.A3229T 0.36 unknown(0) TCGA-A6-5665-01 11 128563940 128563940 A - FLI1 5'UTR 0.33 TCGA-A6-5665-01 11 128680482 128680482 C T FLI1 Missense_Mutation p.R320C 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 11 128936723 128936723 C T ARHGAP32 Missense_Mutation p.R177Q 0.27 deleterious(0.03) probably_damaging(0.943) TCGA-A6-5665-01 11 134018467 134018468 - G JAM3 Frame_Shift_Ins p.V249Gfs*28 0.27 TCGA-A6-5665-01 11 134047262 134047262 C T NCAPD3 Missense_Mutation p.R958H 0.28 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 11 134183882 134183882 A G GLB1L3 Missense_Mutation p.T543A 0.38 tolerated(0.21) benign(0.008) TCGA-A6-5665-01 11 13733566 13733566 C T FAR1 Missense_Mutation p.A287V 0.44 tolerated(0.18) benign(0.053) TCGA-A6-5665-01 11 1411585 1411585 C T BRSK2 Missense_Mutation p.T24M 0.32 deleterious(0) possibly_damaging(0.675) TCGA-A6-5665-01 11 14157021 14157021 A G RNA5SP332 3'Flank 0.35 TCGA-A6-5665-01 11 1466875 1466875 A T BRSK2 Missense_Mutation p.D397V 0.34 deleterious(0.01) possibly_damaging(0.848) TCGA-A6-5665-01 11 17741506 17741506 C T MYOD1 Silent p.P59P 0.35 TCGA-A6-5665-01 11 1856609 1856609 T C SYT8 Missense_Mutation p.C74R 0.26 tolerated(0.4) benign(0.004) TCGA-A6-5665-01 11 20398173 20398173 G A HTATIP2 Silent p.E151E 0.39 TCGA-A6-5665-01 11 20483602 20483602 G T PRMT3 Missense_Mutation p.W383C 0.35 probably_damaging(1) TCGA-A6-5665-01 11 20515752 20515752 T G PRMT3 Missense_Mutation p.W480G 0.35 probably_damaging(1) TCGA-A6-5665-01 11 22239801 22239801 C T ANO5 Nonsense_Mutation p.R50* 0.35 TCGA-A6-5665-01 11 2594154 2594154 G A KCNQ1 Missense_Mutation p.A287T 0.41 tolerated(0.08) probably_damaging(0.913) TCGA-A6-5665-01 11 26586990 26586990 T C MUC15 Missense_Mutation p.N166S 0.30 tolerated_low_confidence(0.17) benign(0.06) TCGA-A6-5665-01 11 26694981 26694981 A G SLC5A12 Missense_Mutation p.C559R 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-A6-5665-01 11 27015934 27015935 - G FIBIN 5'UTR 0.33 TCGA-A6-5665-01 11 27389488 27389488 G A LGR4 Nonsense_Mutation p.R928* 0.43 TCGA-A6-5665-01 11 280784 280784 C T NLRP6 Silent p.S350S 0.41 TCGA-A6-5665-01 11 30034805 30034805 C A KCNA4 5'UTR 0.28 TCGA-A6-5665-01 11 32460833 32460833 C T WT1 5'Flank 0.42 TCGA-A6-5665-01 11 33596259 33596259 G T KIAA1549L Missense_Mutation p.M1117I 0.41 tolerated(0.23) probably_damaging(0.996) TCGA-A6-5665-01 11 33690229 33690229 T - KIAA1549L 3'UTR 0.33 TCGA-A6-5665-01 11 35641322 35641322 C T FJX1 Missense_Mutation p.R380C 0.42 deleterious(0.01) possibly_damaging(0.817) TCGA-A6-5665-01 11 3688850 3688850 G A CHRNA10 Silent p.G169G 0.35 TCGA-A6-5665-01 11 419629 419629 G A ANO9 Silent p.Y629Y 0.30 TCGA-A6-5665-01 11 4406497 4406497 A C TRIM21 3'UTR 0.27 TCGA-A6-5665-01 11 44958374 44958374 A C TP53I11 Missense_Mutation p.L105R 0.23 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 11 450583 450583 G A PTDSS2 Missense_Mutation p.G43D 0.37 tolerated(0.23) benign(0.003) TCGA-A6-5665-01 11 45204495 45204495 G A PRDM11 Missense_Mutation p.V103M 0.35 tolerated(0.22) benign(0.007) TCGA-A6-5665-01 11 45891234 45891234 A G CRY2 Missense_Mutation p.T375A 0.29 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 11 46723080 46723080 G T ZNF408 Missense_Mutation p.A62S 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-A6-5665-01 11 4674216 4674216 C T OR51E1 Missense_Mutation p.R154W 0.36 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 11 46760930 46760932 AGA - F2 In_Frame_Del p.K615del 0.31 TCGA-A6-5665-01 11 47594908 47594908 G A KBTBD4 Silent p.N393N 0.09 TCGA-A6-5665-01 11 47640440 47640440 A - MTCH2 Frame_Shift_Del p.F286Sfs*14 0.34 TCGA-A6-5665-01 11 48177417 48177417 C T PTPRJ Silent p.N1098N 0.31 TCGA-A6-5665-01 11 48328567 48328567 G A OR4S1 Missense_Mutation p.A265T 0.39 tolerated(0.4) benign(0.282) TCGA-A6-5665-01 11 48328668 48328668 G T OR4S1 Missense_Mutation p.K298N 0.30 deleterious(0.05) probably_damaging(0.994) TCGA-A6-5665-01 11 49204780 49204780 G A FOLH1 Missense_Mutation p.R281C 0.05 tolerated(0.07) benign(0.179) TCGA-A6-5665-01 11 55322028 55322029 - T OR4C15 Frame_Shift_Ins p.L84Ffs*65 0.21 TCGA-A6-5665-01 11 55371773 55371773 A G OR4C11 Missense_Mutation p.F26S 0.35 deleterious(0.01) benign(0.244) TCGA-A6-5665-01 11 55579068 55579068 C A OR5L1 Missense_Mutation p.N42K 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 11 55579092 55579092 G A OR5L1 Silent p.Q50Q 0.33 TCGA-A6-5665-01 11 558346 558346 G A C11orf35 Intron 0.38 TCGA-A6-5665-01 11 56510877 56510877 G A OR9G4 Silent p.R137R 0.38 TCGA-A6-5665-01 11 57147237 57147237 G T PRG3 Missense_Mutation p.D35E 0.25 tolerated(0.08) benign(0.13) TCGA-A6-5665-01 11 57379354 57379355 - C SERPING1 Frame_Shift_Ins p.R400Pfs*25 0.23 TCGA-A6-5665-01 11 57414538 57414539 - G YPEL4 Frame_Shift_Ins p.T15Hfs*29 0.30 TCGA-A6-5665-01 11 57440456 57440457 - T ZDHHC5 5'UTR 0.37 TCGA-A6-5665-01 11 57467406 57467406 C - ZDHHC5 Frame_Shift_Del p.P685Lfs*68 0.23 TCGA-A6-5665-01 11 57581825 57581826 - A CTNND1 Frame_Shift_Ins p.S895Ifs*8 0.23 TCGA-A6-5665-01 11 5841694 5841694 G A OR52N2 Silent p.G43G 0.35 TCGA-A6-5665-01 11 58877106 58877106 C T FAM111B Missense_Mutation p.S3F 0.35 tolerated(0.21) benign(0.002) TCGA-A6-5665-01 11 60567545 60567545 A G MS4A10 3'UTR 0.48 TCGA-A6-5665-01 11 60689595 60689595 G T TMEM109 Missense_Mutation p.Q230H 0.21 deleterious(0) possibly_damaging(0.79) TCGA-A6-5665-01 11 61067594 61067594 C - DDB1 3'UTR 0.34 TCGA-A6-5665-01 11 61111695 61111695 G A DAK Missense_Mutation p.R397Q 0.41 deleterious(0.01) probably_damaging(0.96) TCGA-A6-5665-01 11 61503252 61503252 C T DAGLA Silent p.P418P 0.18 TCGA-A6-5665-01 11 61631378 61631378 C T FADS2 Intron 0.39 TCGA-A6-5665-01 11 61641260 61641260 C T FADS3 3'UTR 0.33 TCGA-A6-5665-01 11 62285624 62285624 A G AHNAK Missense_Mutation p.V5422A 0.34 benign(0.373) TCGA-A6-5665-01 11 62362896 62362896 G A MTA2 Silent p.A441A 0.38 TCGA-A6-5665-01 11 62474845 62474845 G T BSCL2 Intron 0.33 TCGA-A6-5665-01 11 63273879 63273880 - G LGALS12 Frame_Shift_Ins p.R8Qfs*27 0.37 TCGA-A6-5665-01 11 63585411 63585411 C T C11orf84 Missense_Mutation p.R88W 0.31 deleterious(0) probably_damaging(0.978) TCGA-A6-5665-01 11 63978193 63978193 C A FERMT3 Missense_Mutation p.L91I 0.35 deleterious(0) possibly_damaging(0.786) TCGA-A6-5665-01 11 64112524 64112524 C A CCDC88B Silent p.A837A 0.26 TCGA-A6-5665-01 11 64118705 64118705 G A CCDC88B Missense_Mutation p.R979Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 11 64127720 64127720 G A RPS6KA4 Silent p.A71A 0.19 TCGA-A6-5665-01 11 64360334 64360334 G A SLC22A12 Silent p.A162A 0.28 TCGA-A6-5665-01 11 64567663 64567663 G T MAP4K2 Missense_Mutation p.P278H 0.48 deleterious(0.01) possibly_damaging(0.628) TCGA-A6-5665-01 11 64825900 64825901 - T NAALADL1 Frame_Shift_Ins p.A32Sfs*46 0.31 TCGA-A6-5665-01 11 65063554 65063554 G A POLA2 Intron 0.13 TCGA-A6-5665-01 11 65320940 65320940 G A LTBP3 Missense_Mutation p.T309I 0.07 deleterious(0) probably_damaging(0.917) TCGA-A6-5665-01 11 65632737 65632737 G A MUS81 Missense_Mutation p.R483H 0.41 tolerated(0.28) benign(0.004) TCGA-A6-5665-01 11 6579216 6579216 C T DNHD1 Silent p.R2897R 0.42 TCGA-A6-5665-01 11 66039333 66039333 G A RAB1B Missense_Mutation p.R27Q 0.37 deleterious(0.01) possibly_damaging(0.814) TCGA-A6-5665-01 11 66055137 66055137 A G YIF1A Missense_Mutation p.V120A 0.29 deleterious(0) benign(0.278) TCGA-A6-5665-01 11 66082192 66082192 G A CD248 3'UTR 0.39 TCGA-A6-5665-01 11 66307090 66307090 G A ZDHHC24 Silent p.L255L 0.27 TCGA-A6-5665-01 11 66334966 66334966 G A CTSF Silent p.N160N 0.35 TCGA-A6-5665-01 11 66393124 66393124 A - RBM14 Frame_Shift_Del p.K594Rfs*15 0.56 TCGA-A6-5665-01 11 66411264 66411264 G A RBM14-RBM4 Silent p.L227L 0.40 TCGA-A6-5665-01 11 6662142 6662142 G - DCHS1 Frame_Shift_Del p.R235Gfs*9 0.38 TCGA-A6-5665-01 11 66625881 66625881 C A LRFN4 Silent p.A222A 0.11 TCGA-A6-5665-01 11 67048944 67048944 G A ADRBK1 Missense_Mutation p.C221Y 0.33 tolerated(0.06) probably_damaging(0.995) TCGA-A6-5665-01 11 67069631 67069631 G A ANKRD13D Missense_Mutation p.G549D 0.33 tolerated(0.4) unknown(0) TCGA-A6-5665-01 11 67192011 67192011 A G CARNS1 Missense_Mutation p.Q931R 0.31 deleterious(0.05) probably_damaging(0.925) TCGA-A6-5665-01 11 68326038 68326038 G T PPP6R3 Nonsense_Mutation p.E246* 0.33 TCGA-A6-5665-01 11 68337316 68337316 C T PPP6R3 Missense_Mutation p.A410V 0.36 tolerated(0.33) benign(0.005) TCGA-A6-5665-01 11 6867512 6867512 C T OR10A5 Missense_Mutation p.A200V 0.37 tolerated(0.89) probably_damaging(1) TCGA-A6-5665-01 11 68696719 68696719 T C IGHMBP2 Missense_Mutation p.C377R 0.40 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 11 71715345 71715345 G A NUMA1 Nonsense_Mutation p.R2017* 0.31 TCGA-A6-5665-01 11 71715795 71715795 C T NUMA1 Missense_Mutation p.R1966H 0.31 benign(0.043) TCGA-A6-5665-01 11 72492055 72492055 C T STARD10 Missense_Mutation p.A58T 0.33 tolerated(0.57) possibly_damaging(0.841) TCGA-A6-5665-01 11 73371801 73371801 C T PLEKHB1 Missense_Mutation p.R167C 0.43 tolerated(0.16) probably_damaging(0.97) TCGA-A6-5665-01 11 75155465 75155465 T C GDPD5 Missense_Mutation p.T264A 0.54 tolerated(0.2) benign(0.05) TCGA-A6-5665-01 11 75316747 75316747 G A MAP6 Intron 0.37 TCGA-A6-5665-01 11 76062798 76062798 G A PRKRIR Nonsense_Mutation p.R466* 0.35 TCGA-A6-5665-01 11 76164431 76164431 A G C11orf30 Missense_Mutation p.N82D 0.32 tolerated_low_confidence(0.08) benign(0.007) TCGA-A6-5665-01 11 76751282 76751282 C T B3GNT6 Silent p.T229T 0.29 TCGA-A6-5665-01 11 76858968 76858968 T C MYO7A Missense_Mutation p.L86P 0.18 deleterious(0) probably_damaging(0.984) TCGA-A6-5665-01 11 8123101 8123101 C T TUB Silent p.L541L 0.37 TCGA-A6-5665-01 11 8123156 8123156 C A TUB Missense_Mutation p.A559E 0.41 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 11 84028139 84028139 C T DLG2 Intron 0.31 TCGA-A6-5665-01 11 85347276 85347276 A - TMEM126B 3'UTR 0.27 TCGA-A6-5665-01 11 85689127 85689127 G A PICALM Intron 0.36 TCGA-A6-5665-01 11 85707899 85707899 T C PICALM Missense_Mutation p.T410A 0.39 tolerated(0.76) benign(0.001) TCGA-A6-5665-01 11 8640964 8640964 C T TRIM66 Missense_Mutation p.R1142H 0.38 tolerated(0.08) benign(0.022) TCGA-A6-5665-01 11 86521234 86521234 T G PRSS23 3'UTR 0.36 TCGA-A6-5665-01 11 8661839 8661840 - C TRIM66 Frame_Shift_Ins p.Q548Afs*26 0.43 TCGA-A6-5665-01 11 88241722 88241722 G A GRM5 3'UTR 0.19 TCGA-A6-5665-01 11 89880665 89880665 T C NAALAD2 Missense_Mutation p.V121A 0.34 deleterious(0.03) benign(0.16) TCGA-A6-5665-01 11 94189484 94189484 G T MRE11A Silent p.T507T 0.28 TCGA-A6-5665-01 11 94533230 94533230 G - AMOTL1 Frame_Shift_Del p.S295Pfs*26 0.27 TCGA-A6-5665-01 11 94704198 94704199 - T CWC15 Frame_Shift_Ins p.P93Afs*12 0.31 TCGA-A6-5665-01 12 100200334 100200334 G A ANKS1B Missense_Mutation p.R173W 0.35 deleterious(0) probably_damaging(0.989) TCGA-A6-5665-01 12 100732747 100732747 C T SCYL2 Nonsense_Mutation p.Q863* 0.32 TCGA-A6-5665-01 12 10313010 10313010 G T OLR1 Missense_Mutation p.L206M 0.31 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 12 104031813 104031813 A G STAB2 Silent p.R243R 0.34 TCGA-A6-5665-01 12 104099458 104099458 C T STAB2 Nonsense_Mutation p.R1317* 0.33 TCGA-A6-5665-01 12 104171679 104171679 G A NT5DC3 Silent p.H525H 0.27 TCGA-A6-5665-01 12 105434389 105434389 G A ALDH1L2 Silent p.G649G 0.36 TCGA-A6-5665-01 12 106461157 106461157 T G NUAK1 Missense_Mutation p.K470T 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-A6-5665-01 12 106480510 106480510 A G NUAK1 Splice_Site p.X171_splice 0.35 TCGA-A6-5665-01 12 108913043 108913043 A G FICD Missense_Mutation p.T390A 0.30 deleterious(0.04) possibly_damaging(0.701) TCGA-A6-5665-01 12 108985717 108985717 C T TMEM119 Missense_Mutation p.R148Q 0.30 tolerated(0.1) benign(0.024) TCGA-A6-5665-01 12 109536413 109536414 - G UNG Frame_Shift_Ins p.E105Gfs*38 0.39 TCGA-A6-5665-01 12 109690911 109690911 A C ACACB Missense_Mutation p.D1998A 0.31 deleterious(0) probably_damaging(0.988) TCGA-A6-5665-01 12 109961846 109961846 A G UBE3B Missense_Mutation p.S810G 0.33 tolerated(0.18) benign(0.21) TCGA-A6-5665-01 12 110019222 110019222 G A MVK Missense_Mutation p.V132I 0.29 tolerated(0.24) benign(0.007) TCGA-A6-5665-01 12 110656333 110656333 T - IFT81 3'UTR 0.40 TCGA-A6-5665-01 12 110927860 110927860 A - FAM216A Frame_Shift_Del p.K249Rfs*6 0.31 TCGA-A6-5665-01 12 110968549 110968549 T G RAD9B Intron 0.29 TCGA-A6-5665-01 12 111087158 111087158 C T HVCN1 3'UTR 0.31 TCGA-A6-5665-01 12 111089136 111089136 C T HVCN1 Missense_Mutation p.V177M 0.40 deleterious(0) probably_damaging(0.985) TCGA-A6-5665-01 12 111772439 111772439 G A CUX2 Missense_Mutation p.V1041M 0.41 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 12 112186254 112186254 G A ACAD10 Silent p.T904T 0.47 TCGA-A6-5665-01 12 112600860 112600860 G - HECTD4 Frame_Shift_Del p.P4223Qfs*21 0.52 TCGA-A6-5665-01 12 113612847 113612847 G A DDX54 Missense_Mutation p.R290W 0.32 deleterious(0) probably_damaging(0.924) TCGA-A6-5665-01 12 116444151 116444151 C T MED13L Silent p.G768G 0.33 TCGA-A6-5665-01 12 117013702 117013702 G A MAP1LC3B2 5'UTR 0.25 TCGA-A6-5665-01 12 117290382 117290382 T C RNFT2 3'Flank 0.40 TCGA-A6-5665-01 12 117723944 117723944 G A NOS1 Missense_Mutation p.R419C 0.36 deleterious(0) probably_damaging(0.993) TCGA-A6-5665-01 12 118481127 118481127 G A WSB2 Missense_Mutation p.R80W 0.27 deleterious(0) possibly_damaging(0.803) TCGA-A6-5665-01 12 118636902 118636902 T C TAOK3 Missense_Mutation p.D383G 0.14 tolerated(0.47) benign(0.001) TCGA-A6-5665-01 12 119937910 119937911 - A CCDC60 Frame_Shift_Ins p.I198Nfs*3 0.31 TCGA-A6-5665-01 12 120150420 120150420 C T CIT Missense_Mutation p.E1554K 0.26 deleterious(0) possibly_damaging(0.894) TCGA-A6-5665-01 12 120611963 120611963 G A GCN1L1 Silent p.S368S 0.34 TCGA-A6-5665-01 12 121014596 121014596 G A RNF10 3'UTR 0.37 TCGA-A6-5665-01 12 121432086 121432086 G A HNF1A Missense_Mutation p.R278Q 0.38 deleterious(0) probably_damaging(0.927) TCGA-A6-5665-01 12 121880522 121880522 C T KDM2B Missense_Mutation p.D908N 0.34 tolerated_low_confidence(0.09) probably_damaging(0.964) TCGA-A6-5665-01 12 122016705 122016705 A G KDM2B Splice_Site p.X91_splice 0.32 TCGA-A6-5665-01 12 122406016 122406016 C T WDR66 Silent p.C904C 0.31 TCGA-A6-5665-01 12 122619811 122619811 A G MLXIP Silent p.S591S 0.31 TCGA-A6-5665-01 12 122691470 122691470 C T B3GNT4 Silent p.H224H 0.44 TCGA-A6-5665-01 12 12273985 12273985 C - LRP6 3'UTR 0.28 TCGA-A6-5665-01 12 122763671 122763671 G A CLIP1 Silent p.D1223D 0.40 TCGA-A6-5665-01 12 123340131 123340131 C - HIP1R Frame_Shift_Del p.N345Mfs*4 0.09 TCGA-A6-5665-01 12 123475207 123475207 G - PITPNM2 Frame_Shift_Del p.S819Pfs*140 0.48 TCGA-A6-5665-01 12 124090693 124090694 - A DDX55 Frame_Shift_Ins p.S81Efs*48 0.25 TCGA-A6-5665-01 12 124371770 124371770 A G DNAH10 Missense_Mutation p.I2851V 0.34 benign(0.006) TCGA-A6-5665-01 12 124831256 124831256 G - NCOR2 Frame_Shift_Del p.L1405* 0.46 TCGA-A6-5665-01 12 124856986 124856986 T C NCOR2 Missense_Mutation p.T797A 0.38 unknown(0) TCGA-A6-5665-01 12 125455903 125455903 A G DHX37 Missense_Mutation p.V379A 0.46 tolerated(0.1) benign(0.259) TCGA-A6-5665-01 12 126138287 126138287 G A TMEM132B Silent p.G756G 0.40 TCGA-A6-5665-01 12 130184784 130184784 C T TMEM132D Missense_Mutation p.R180Q 0.27 tolerated(0.06) possibly_damaging(0.476) TCGA-A6-5665-01 12 130648621 130648621 C T FZD10 Silent p.D378D 0.18 TCGA-A6-5665-01 12 132490745 132490745 C T EP400 Silent p.A1008A 0.34 TCGA-A6-5665-01 12 132510276 132510276 G A EP400 Silent p.A1647A 0.43 TCGA-A6-5665-01 12 132824533 132824533 A C GALNT9 Missense_Mutation p.F35C 0.34 deleterious(0) possibly_damaging(0.878) TCGA-A6-5665-01 12 132862879 132862879 G A GALNT9 Missense_Mutation p.R126C 0.38 deleterious(0) probably_damaging(0.996) TCGA-A6-5665-01 12 133237651 133237651 C T POLE Silent p.S988S 0.42 TCGA-A6-5665-01 12 133319774 133319774 T C ANKLE2 Missense_Mutation p.N440S 0.30 tolerated(0.1) benign(0.05) TCGA-A6-5665-01 12 133353575 133353575 T G GOLGA3 Missense_Mutation p.Q1275P 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5665-01 12 13367727 13367727 G - EMP1 3'UTR 0.60 TCGA-A6-5665-01 12 15095547 15095547 T C ARHGDIB Missense_Mutation p.Y172C 0.29 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 12 16109908 16109908 G A DERA Missense_Mutation p.A24T 0.36 deleterious(0.01) benign(0.232) TCGA-A6-5665-01 12 1902822 1902822 C T CACNA2D4 Silent p.%3D 0.41 TCGA-A6-5665-01 12 21448590 21448591 - A SLCO1A2 Frame_Shift_Ins p.L404Ffs*8 0.24 TCGA-A6-5665-01 12 21926439 21926439 C T KCNJ8 Missense_Mutation p.A38T 0.34 tolerated(0.58) probably_damaging(0.994) TCGA-A6-5665-01 12 25307328 25307328 C T CASC1 Silent p.T121T 0.35 TCGA-A6-5665-01 12 25672975 25672975 T C IFLTD1 Missense_Mutation p.Q278R 0.33 deleterious(0.03) possibly_damaging(0.868) TCGA-A6-5665-01 12 266272 266272 G - IQSEC3 Frame_Shift_Del p.E747Rfs*58 0.32 TCGA-A6-5665-01 12 266840 266840 A T IQSEC3 Missense_Mutation p.D808V 0.39 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 12 27571076 27571076 C T ARNTL2 Missense_Mutation p.A574V 0.40 tolerated(0.09) benign(0.394) TCGA-A6-5665-01 12 27813837 27813837 A - PPFIBP1 Frame_Shift_Del p.A311Lfs*5 0.27 TCGA-A6-5665-01 12 27835403 27835403 T C PPFIBP1 Silent p.H716H 0.34 TCGA-A6-5665-01 12 29592308 29592308 G T OVCH1 Missense_Mutation p.L1073M 0.31 tolerated(0.32) benign(0.044) TCGA-A6-5665-01 12 2968088 2968088 G - FOXM1 Frame_Shift_Del p.E709Nfs*12 0.30 TCGA-A6-5665-01 12 31246184 31246184 G A DDX11 Missense_Mutation p.R432H 0.30 deleterious(0.01) benign(0.075) TCGA-A6-5665-01 12 31250913 31250913 G - DDX11 Frame_Shift_Del p.G621Vfs*32 0.16 TCGA-A6-5665-01 12 31254884 31254884 G T DDX11 Missense_Mutation p.G724C 0.35 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 12 32138031 32138031 A G KIAA1551 Missense_Mutation p.N1381S 0.38 tolerated(0.86) benign(0.004) TCGA-A6-5665-01 12 39725576 39725576 C T KIF21A Silent p.L1023L 0.34 TCGA-A6-5665-01 12 40013081 40013081 C T ABCD2 Missense_Mutation p.A113T 0.40 tolerated(0.47) benign(0.013) TCGA-A6-5665-01 12 42839891 42839891 G A PPHLN1 Silent p.P383P 0.52 TCGA-A6-5665-01 12 43833808 43833808 T - ADAMTS20 Frame_Shift_Del p.E786Kfs*86 0.21 TCGA-A6-5665-01 12 44165050 44165050 A - IRAK4 Frame_Shift_Del p.S65Vfs*24 0.25 TCGA-A6-5665-01 12 45444559 45444559 G A DBX2 Missense_Mutation p.T51M 0.33 tolerated(0.15) benign(0.067) TCGA-A6-5665-01 12 46245271 46245271 T C ARID2 Missense_Mutation p.V1122A 0.33 deleterious_low_confidence(0.04) probably_damaging(0.97) TCGA-A6-5665-01 12 46623024 46623024 A G SLC38A1 Missense_Mutation p.S76P 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-A6-5665-01 12 47173567 47173568 - T SLC38A4 Frame_Shift_Ins p.N218Kfs*21 0.25 TCGA-A6-5665-01 12 48135215 48135216 - C RAPGEF3 Intron 0.14 TCGA-A6-5665-01 12 48174146 48174147 - C SLC48A1 3'UTR 0.30 TCGA-A6-5665-01 12 48373317 48373317 G A COL2A1 Missense_Mutation p.R904C 0.34 unknown(0) TCGA-A6-5665-01 12 4921516 4921516 C A KCNA6 3'UTR 0.33 TCGA-A6-5665-01 12 49438650 49438650 G A KMT2D Missense_Mutation p.R1614W 0.30 probably_damaging(0.997) TCGA-A6-5665-01 12 49936527 49936527 G T KCNH3 Missense_Mutation p.G162C 0.33 deleterious(0.02) benign(0.064) TCGA-A6-5665-01 12 49948320 49948320 G - KCNH3 Frame_Shift_Del p.G708Efs*11 0.43 TCGA-A6-5665-01 12 50187558 50187558 G T NCKAP5L Missense_Mutation p.L1073M 0.36 tolerated(0.13) probably_damaging(0.982) TCGA-A6-5665-01 12 51135315 51135315 G A DIP2B Missense_Mutation p.A1491T 0.40 tolerated(0.38) possibly_damaging(0.461) TCGA-A6-5665-01 12 51685392 51685393 - G BIN2 Frame_Shift_Ins p.T500Hfs*24 0.28 TCGA-A6-5665-01 12 52827848 52827848 G A KRT75 Nonsense_Mutation p.R81* 0.27 TCGA-A6-5665-01 12 52938501 52938501 T C KRT71 Missense_Mutation p.S463G 0.44 tolerated(0.37) benign(0) TCGA-A6-5665-01 12 52979775 52979775 G T KRT72 Silent p.A509A 0.06 TCGA-A6-5665-01 12 52995071 52995071 G A KRT72 Nonsense_Mutation p.R56* 0.44 TCGA-A6-5665-01 12 53041536 53041537 - C KRT2 Frame_Shift_Ins p.E409Gfs*10 0.37 TCGA-A6-5665-01 12 53216974 53216975 - C KRT79 Frame_Shift_Ins p.E398Gfs*31 0.40 TCGA-A6-5665-01 12 53621235 53621236 - C RARG Frame_Shift_Ins p.A32Gfs*14 0.30 TCGA-A6-5665-01 12 53680103 53680103 G A ESPL1 Missense_Mutation p.A1195T 0.30 tolerated(1) benign(0.001) TCGA-A6-5665-01 12 53703037 53703037 A G AAAS Missense_Mutation p.V280A 0.30 deleterious(0.02) benign(0.2) TCGA-A6-5665-01 12 53880958 53880958 G - MAP3K12 Frame_Shift_Del p.P73Lfs*62 0.49 TCGA-A6-5665-01 12 53937087 53937087 T - ATF7 Intron 0.28 TCGA-A6-5665-01 12 54379665 54379666 - C HOXC10 Frame_Shift_Ins p.S210Qfs*4 0.30 TCGA-A6-5665-01 12 54396375 54396375 C T HOXC9 Missense_Mutation p.R234W 0.37 deleterious(0) probably_damaging(0.996) TCGA-A6-5665-01 12 54963017 54963017 G A PDE1B Missense_Mutation p.V93M 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-A6-5665-01 12 56351789 56351790 - GT PMEL Frame_Shift_Ins p.M184Pfs*4 0.23 TCGA-A6-5665-01 12 57619560 57619560 C T NXPH4 3'UTR 0.32 TCGA-A6-5665-01 12 57920716 57920716 G A MBD6 Silent p.S596S 0.40 TCGA-A6-5665-01 12 58157512 58157512 C T CYP27B1 Missense_Mutation p.R432H 0.34 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 12 58190455 58190455 C T TSFM 3'UTR 0.35 TCGA-A6-5665-01 12 62902385 62902385 C T MON2 Intron 0.34 TCGA-A6-5665-01 12 6347061 6347061 T - CD9 3'UTR 0.26 TCGA-A6-5665-01 12 63543862 63543862 G A AVPR1A Missense_Mutation p.A252V 0.55 tolerated(0.2) benign(0.009) TCGA-A6-5665-01 12 63954244 63954245 - T DPY19L2 3'UTR 0.32 TCGA-A6-5665-01 12 64889555 64889555 A G TBK1 Missense_Mutation p.R574G 0.33 tolerated(0.4) benign(0.21) TCGA-A6-5665-01 12 6554601 6554601 G A CD27 Missense_Mutation p.V50M 0.48 tolerated(0.17) possibly_damaging(0.459) TCGA-A6-5665-01 12 66718865 66718865 C T HELB Missense_Mutation p.R877C 0.33 deleterious(0) possibly_damaging(0.901) TCGA-A6-5665-01 12 67663543 67663543 A G CAND1 Missense_Mutation p.T16A 0.33 tolerated(0.08) benign(0.15) TCGA-A6-5665-01 12 67706721 67706721 T - CAND1 3'UTR 0.29 TCGA-A6-5665-01 12 68642496 68642497 - A IL22 3'UTR 0.30 TCGA-A6-5665-01 12 6939700 6939700 C A LEPREL2 Missense_Mutation p.L278I 0.21 deleterious(0.01) benign(0.253) TCGA-A6-5665-01 12 6971663 6971663 A G USP5 Missense_Mutation p.Y568C 0.34 deleterious(0.03) benign(0.285) TCGA-A6-5665-01 12 71978165 71978165 A G LGR5 Missense_Mutation p.N792S 0.39 tolerated(0.48) benign(0.113) TCGA-A6-5665-01 12 74932351 74932351 T - ATXN7L3B 3'UTR 0.32 TCGA-A6-5665-01 12 75683480 75683480 T C CAPS2 Missense_Mutation p.D458G 0.34 deleterious(0) probably_damaging(0.971) TCGA-A6-5665-01 12 7654009 7654009 G A CD163 Silent p.S61S 0.38 TCGA-A6-5665-01 12 7945721 7945721 A G NANOG Silent p.V109V 0.32 TCGA-A6-5665-01 12 79990313 79990313 T - PAWR Frame_Shift_Del p.K270Rfs*10 0.30 TCGA-A6-5665-01 12 81101720 81101720 C A MYF6 Silent p.P74P 0.31 TCGA-A6-5665-01 12 81799670 81799670 G A PPFIA2 Missense_Mutation p.R220C 0.36 deleterious(0) possibly_damaging(0.663) TCGA-A6-5665-01 12 8212582 8212582 G A C3AR1 Missense_Mutation p.A67V 0.08 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 12 83289709 83289709 C T TMTC2 Missense_Mutation p.S256L 0.34 deleterious(0) possibly_damaging(0.59) TCGA-A6-5665-01 12 8666271 8666272 AA - CLEC4D 5'UTR 0.32 TCGA-A6-5665-01 12 88381669 88381669 T C C12orf50 Missense_Mutation p.T259A 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-A6-5665-01 12 88472906 88472906 A G CEP290 Missense_Mutation p.V1776A 0.37 possibly_damaging(0.727) TCGA-A6-5665-01 12 8995861 8995861 C T A2ML1 Silent p.G460G 0.40 TCGA-A6-5665-01 12 93251205 93251205 A G EEA1 Splice_Site p.X100_splice 0.38 TCGA-A6-5665-01 12 95507466 95507466 T C FGD6 Missense_Mutation p.N1032D 0.19 deleterious(0) probably_damaging(0.992) TCGA-A6-5665-01 12 95603566 95603566 T - FGD6 Frame_Shift_Del p.K498Nfs*39 0.29 TCGA-A6-5665-01 12 96077383 96077383 G A NTN4 Nonsense_Mutation p.R429* 0.43 TCGA-A6-5665-01 13 100154009 100154009 A - TM9SF2 Frame_Shift_Del p.K52Rfs*9 0.35 TCGA-A6-5665-01 13 101721115 101721115 G A NALCN Missense_Mutation p.A1421V 0.26 tolerated(0.5) benign(0.115) TCGA-A6-5665-01 13 102030980 102030980 G A NALCN Missense_Mutation p.R106C 0.35 deleterious(0) probably_damaging(0.985) TCGA-A6-5665-01 13 103385236 103385236 T - CCDC168 Frame_Shift_Del p.K1308Nfs*10 0.30 TCGA-A6-5665-01 13 108885237 108885237 A G ABHD13 3'UTR 0.34 TCGA-A6-5665-01 13 109379898 109379898 C T MYO16 Silent p.C136C 0.33 TCGA-A6-5665-01 13 110830244 110830244 G A COL4A1 Silent p.P887P 0.31 TCGA-A6-5665-01 13 111164510 111164510 G A COL4A2 Missense_Mutation p.R1704H 0.46 unknown(0) TCGA-A6-5665-01 13 113825984 113825984 C T PROZ Silent p.D278D 0.23 TCGA-A6-5665-01 13 24520006 24520006 A G ANKRD20A19P RNA 0.09 TCGA-A6-5665-01 13 24520024 24520024 G A ANKRD20A19P RNA 0.35 TCGA-A6-5665-01 13 25272990 25272990 T C ATP12A Splice_Site p.X575_splice 0.22 TCGA-A6-5665-01 13 26148997 26148997 T C ATP8A2 Splice_Site p.X571_splice 0.30 TCGA-A6-5665-01 13 30109989 30109989 T C SLC7A1 Missense_Mutation p.T113A 0.35 tolerated(0.14) probably_damaging(0.964) TCGA-A6-5665-01 13 32735336 32735336 C T FRY Nonsense_Mutation p.R614* 0.36 TCGA-A6-5665-01 13 32930667 32930668 - A BRCA2 Frame_Shift_Ins p.T2515Nfs*24 0.31 TCGA-A6-5665-01 13 33334791 33334791 C T PDS5B Nonsense_Mutation p.R1151* 0.33 TCGA-A6-5665-01 13 34404004 34404004 C A RFC3 Silent p.T141T 0.39 TCGA-A6-5665-01 13 37567763 37567763 C A ALG5 Missense_Mutation p.G111V 0.28 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 13 41766292 41766292 A G KBTBD7 3'UTR 0.06 TCGA-A6-5665-01 13 45965388 45965388 C T SLC25A30 3'Flank 0.41 TCGA-A6-5665-01 13 46288457 46288457 G A SPERT Missense_Mutation p.A433T 0.39 tolerated(0.06) probably_damaging(0.948) TCGA-A6-5665-01 13 48528394 48528394 C T SUCLA2 Missense_Mutation p.A330T 0.29 deleterious(0) probably_damaging(0.942) TCGA-A6-5665-01 13 49075902 49075902 G C RCBTB2 Missense_Mutation p.A407G 0.36 deleterious(0) possibly_damaging(0.644) TCGA-A6-5665-01 13 49086907 49086907 G T RCBTB2 Silent p.A158A 0.42 TCGA-A6-5665-01 13 49918312 49918312 T C CAB39L Intron 0.30 TCGA-A6-5665-01 13 50204773 50204773 G A ARL11 Missense_Mutation p.V64I 0.25 tolerated(0.18) benign(0.081) TCGA-A6-5665-01 13 50235052 50235052 T C EBPL 3'UTR 0.38 TCGA-A6-5665-01 13 52598897 52598898 - T ALG11 Frame_Shift_Ins p.C345Lfs*3 0.28 TCGA-A6-5665-01 13 53418988 53418988 C T PCDH8 Missense_Mutation p.A974T 0.35 tolerated(0.97) benign(0.013) TCGA-A6-5665-01 13 61013897 61013897 T C TDRD3 Silent p.I39I 0.34 TCGA-A6-5665-01 13 75923379 75923379 A G TBC1D4 Silent p.S445S 0.33 TCGA-A6-5665-01 13 76382190 76382190 C T LMO7 Missense_Mutation p.R358C 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 13 76412318 76412318 A - LMO7 Frame_Shift_Del p.Q913Hfs*59 0.25 TCGA-A6-5665-01 13 76432245 76432245 A G LMO7 3'UTR 0.33 TCGA-A6-5665-01 13 77619422 77619422 C T MYCBP2 3'UTR 0.41 TCGA-A6-5665-01 13 88328829 88328829 C T SLITRK5 Nonsense_Mutation p.R396* 0.31 TCGA-A6-5665-01 13 95364245 95364245 C T SOX21 Missense_Mutation p.R20Q 0.30 deleterious(0) probably_damaging(0.965) TCGA-A6-5665-01 13 99047717 99047717 G A FARP1 Silent p.P467P 0.53 TCGA-A6-5665-01 13 99575595 99575595 A G DOCK9 Silent p.V149V 0.31 TCGA-A6-5665-01 14 100404234 100404234 G C EML1 Missense_Mutation p.G745R 0.30 deleterious(0) possibly_damaging(0.826) TCGA-A6-5665-01 14 101200664 101200664 C T DLK1 Missense_Mutation p.R195W 0.38 tolerated(0.1) probably_damaging(1) TCGA-A6-5665-01 14 101350133 101350133 G A RTL1 Silent p.N331N 0.29 TCGA-A6-5665-01 14 102027903 102027903 G T DIO3 Missense_Mutation p.A24S 0.47 deleterious_low_confidence(0) benign(0.032) TCGA-A6-5665-01 14 102391620 102391620 G A PPP2R5C 3'UTR 0.30 TCGA-A6-5665-01 14 102471465 102471465 C T DYNC1H1 Silent p.A1775A 0.35 TCGA-A6-5665-01 14 102483448 102483448 T C DYNC1H1 Silent p.S2624S 0.29 TCGA-A6-5665-01 14 103568988 103568988 G T EXOC3L4 Nonsense_Mutation p.E310* 0.36 TCGA-A6-5665-01 14 104219466 104219467 - A PPP1R13B Frame_Shift_Ins p.L233Ffs*4 0.25 TCGA-A6-5665-01 14 105270762 105270762 T C ZBTB42 3'UTR 0.43 TCGA-A6-5665-01 14 105405451 105405452 - C AHNAK2 Frame_Shift_Ins p.E5446Gfs*7 0.22 TCGA-A6-5665-01 14 105405610 105405610 C A AHNAK2 Missense_Mutation p.R5393M 0.31 possibly_damaging(0.895) TCGA-A6-5665-01 14 105409182 105409182 C T AHNAK2 Silent p.P4202P 0.35 TCGA-A6-5665-01 14 106321640 106321640 G A IGHM Silent p.R198R 0.33 TCGA-A6-5665-01 14 107013240 107013240 A T IGHV3-49 Missense_Mutation p.C19S 0.27 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-A6-5665-01 14 20502773 20502773 C T OR4K13 Missense_Mutation p.V49M 0.36 deleterious(0) probably_damaging(0.972) TCGA-A6-5665-01 14 20820498 20820498 A G PARP2 Missense_Mutation p.N211D 0.51 tolerated(0.45) benign(0.001) TCGA-A6-5665-01 14 20852646 20852647 - C TEP1 Frame_Shift_Ins p.V1082Cfs*47 0.30 TCGA-A6-5665-01 14 21542416 21542416 T C ARHGEF40 Missense_Mutation p.L176P 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-A6-5665-01 14 21571534 21571534 C T ZNF219 5'Flank 0.70 TCGA-A6-5665-01 14 21699227 21699227 A G HNRNPC Silent p.I82I 0.36 TCGA-A6-5665-01 14 21866085 21866085 C T CHD8 Missense_Mutation p.A1650T 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-A6-5665-01 14 21929230 21929230 T C RAB2B 3'UTR 0.46 TCGA-A6-5665-01 14 21992441 21992441 C T SALL2 Missense_Mutation p.R474H 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-A6-5665-01 14 22005160 22005160 C - SALL2 5'UTR 0.23 TCGA-A6-5665-01 14 23569283 23569283 T C C14orf119 3'UTR 0.50 TCGA-A6-5665-01 14 24040358 24040358 C T JPH4 Missense_Mutation p.G528S 0.34 tolerated(0.12) benign(0.179) TCGA-A6-5665-01 14 24475295 24475295 G A DHRS4L2 3'UTR 0.35 TCGA-A6-5665-01 14 24731494 24731494 G A TGM1 Missense_Mutation p.T22M 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.802) TCGA-A6-5665-01 14 24769917 24769917 T C NOP9 Missense_Mutation p.L184P 0.36 deleterious(0) probably_damaging(0.937) TCGA-A6-5665-01 14 24785883 24785883 C A LTB4R Silent p.A342A 0.20 TCGA-A6-5665-01 14 24900805 24900805 C A KHNYN Missense_Mutation p.P113H 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-A6-5665-01 14 31163980 31163980 C A SCFD1 Missense_Mutation p.A415E 0.28 tolerated(1) benign(0.014) TCGA-A6-5665-01 14 31852914 31852914 G A HEATR5A Missense_Mutation p.A177V 0.39 deleterious(0) probably_damaging(0.974) TCGA-A6-5665-01 14 33165304 33165304 G A AKAP6 Silent p.Q996Q 0.29 TCGA-A6-5665-01 14 35036890 35036890 A G SNX6 Splice_Site p.X401_splice 0.41 TCGA-A6-5665-01 14 36789709 36789709 A G MBIP Missense_Mutation p.V29A 0.30 tolerated(0.1) benign(0.011) TCGA-A6-5665-01 14 36982470 36982470 C T SFTA3 5'UTR 0.48 TCGA-A6-5665-01 14 45497493 45497493 C T FAM179B Nonsense_Mutation p.R1207* 0.31 TCGA-A6-5665-01 14 50269254 50269254 C T NEMF Missense_Mutation p.R671Q 0.35 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 14 50585066 50585066 T C SOS2 Missense_Mutation p.Q1332R 0.30 deleterious_low_confidence(0.02) benign(0.104) TCGA-A6-5665-01 14 50892654 50892654 T C MAP4K5 Missense_Mutation p.M790V 0.20 tolerated(0.23) benign(0.219) TCGA-A6-5665-01 14 52182097 52182097 T C FRMD6 Missense_Mutation p.Y302H 0.29 deleterious(0) probably_damaging(0.966) TCGA-A6-5665-01 14 52781729 52781729 G A PTGER2 Missense_Mutation p.A155T 0.39 deleterious(0.03) benign(0.297) TCGA-A6-5665-01 14 54417140 54417140 G A BMP4 Silent p.G279G 0.41 TCGA-A6-5665-01 14 55226985 55226985 G A SAMD4A Missense_Mutation p.R428H 0.33 tolerated(0.17) benign(0) TCGA-A6-5665-01 14 55836626 55836626 A G ATG14 Missense_Mutation p.V397A 0.33 deleterious(0.01) benign(0.152) TCGA-A6-5665-01 14 56126395 56126396 - C KTN1 Frame_Shift_Ins p.H994Sfs*2 0.26 TCGA-A6-5665-01 14 56645166 56645166 C T PELI2 Missense_Mutation p.T64M 0.32 deleterious(0.01) probably_damaging(0.976) TCGA-A6-5665-01 14 58599947 58599947 A G C14orf37 Silent p.T494T 0.44 TCGA-A6-5665-01 14 59797334 59797334 G T DAAM1 Missense_Mutation p.K496N 0.34 deleterious(0) unknown(0) TCGA-A6-5665-01 14 61748158 61748159 - T TMEM30B 5'UTR 0.42 TCGA-A6-5665-01 14 62014535 62014535 T - RP11-47I22.4 Frame_Shift_Del p.F119Lfs*9 0.33 TCGA-A6-5665-01 14 64483281 64483281 A G SYNE2 Missense_Mutation p.K1607E 0.17 probably_damaging(0.999) TCGA-A6-5665-01 14 65007384 65007384 G A HSPA2 5'UTR 0.21 TCGA-A6-5665-01 14 65008351 65008351 G A HSPA2 Missense_Mutation p.A262T 0.39 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-A6-5665-01 14 67674928 67674928 A - FAM71D Frame_Shift_Del p.N309Tfs*3 0.09 TCGA-A6-5665-01 14 67940179 67940179 G A TMEM229B Silent p.S154S 0.39 TCGA-A6-5665-01 14 68193808 68193808 G A RDH12 Missense_Mutation p.D187N 0.17 tolerated(0.09) benign(0.098) TCGA-A6-5665-01 14 69520935 69520935 C A DCAF5 Missense_Mutation p.R823M 0.34 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-A6-5665-01 14 73448513 73448513 A C ZFYVE1 Missense_Mutation p.L432V 0.21 tolerated(0.43) benign(0) TCGA-A6-5665-01 14 73746054 73746054 C T NUMB Missense_Mutation p.R392H 0.35 tolerated(0.08) probably_damaging(0.986) TCGA-A6-5665-01 14 74422201 74422201 C T COQ6 Missense_Mutation p.R116W 0.34 deleterious(0) possibly_damaging(0.836) TCGA-A6-5665-01 14 74439681 74439681 T C ENTPD5 Silent p.V311V 0.33 TCGA-A6-5665-01 14 74824379 74824379 G A VRTN Missense_Mutation p.R298H 0.43 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 14 75356602 75356602 G A DLST Missense_Mutation p.V93I 0.31 tolerated(0.12) possibly_damaging(0.891) TCGA-A6-5665-01 14 76928919 76928919 C T ESRRB Silent p.N143N 0.45 TCGA-A6-5665-01 14 77242270 77242271 - C VASH1 Frame_Shift_Ins p.I191Hfs*99 0.43 TCGA-A6-5665-01 14 79111725 79111725 C T NRXN3 5'UTR 0.31 TCGA-A6-5665-01 14 80130218 80130218 T C NRXN3 Missense_Mutation p.V808A 0.33 deleterious(0.02) benign(0.001) TCGA-A6-5665-01 14 81609744 81609744 G A TSHR Missense_Mutation p.V448I 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 14 81744254 81744254 T C STON2 Silent p.L467L 0.35 TCGA-A6-5665-01 14 86094246 86094246 A G FLRT2 3'UTR 0.14 TCGA-A6-5665-01 14 88406272 88406272 A G GALC Missense_Mutation p.Y630H 0.28 tolerated(0.64) benign(0.388) TCGA-A6-5665-01 14 88652442 88652442 G A KCNK10 Missense_Mutation p.R357W 0.37 deleterious(0) possibly_damaging(0.891) TCGA-A6-5665-01 14 89343804 89343804 A - TTC8 3'UTR 0.18 TCGA-A6-5665-01 14 90528756 90528756 C T KCNK13 Silent p.D69D 0.48 TCGA-A6-5665-01 14 91805660 91805660 G A CCDC88C Silent p.A257A 0.36 TCGA-A6-5665-01 14 93712475 93712475 G - BTBD7 Frame_Shift_Del p.P760Lfs*61 0.37 TCGA-A6-5665-01 14 94741723 94741723 G A PPP4R4 Missense_Mutation p.R821Q 0.39 tolerated_low_confidence(0.16) benign(0.08) TCGA-A6-5665-01 14 94780372 94780372 C - SERPINA6 Splice_Site p.X205_splice 0.34 TCGA-A6-5665-01 14 95030000 95030000 C T SERPINA4 Missense_Mutation p.R61C 0.27 tolerated(0.1) benign(0.057) TCGA-A6-5665-01 14 96010550 96010550 T C GLRX5 3'UTR 0.27 TCGA-A6-5665-01 14 99959174 99959174 G A CCNK Missense_Mutation p.A54T 0.39 deleterious(0.01) probably_damaging(0.971) TCGA-A6-5665-01 15 100672325 100672325 C T ADAMTS17 Silent p.T536T 0.34 TCGA-A6-5665-01 15 102346287 102346287 G A OR4F6 Missense_Mutation p.R122Q 0.34 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-A6-5665-01 15 21063452 21063452 T C POTEB2 Missense_Mutation p.D265G 0.10 deleterious(0.01) possibly_damaging(0.728) TCGA-A6-5665-01 15 22074608 22074608 T C POTEB Missense_Mutation p.D265G 0.13 deleterious(0.01) possibly_damaging(0.728) TCGA-A6-5665-01 15 22872667 22872667 A G TUBGCP5 Intron 0.40 TCGA-A6-5665-01 15 23444035 23444035 G - AC100757.1 5'Flank 0.14 TCGA-A6-5665-01 15 23889565 23889565 T C MAGEL2 Missense_Mutation p.K506E 0.32 deleterious(0) possibly_damaging(0.589) TCGA-A6-5665-01 15 24927247 24927248 AG - NPAP1 3'UTR 0.28 TCGA-A6-5665-01 15 25223428 25223428 G A SNRPN Silent p.P216P 0.44 TCGA-A6-5665-01 15 25616652 25616652 T - UBE3A Frame_Shift_Del p.K226Nfs*2 0.26 TCGA-A6-5665-01 15 25953381 25953381 G A ATP10A Missense_Mutation p.A804V 0.33 deleterious(0) probably_damaging(0.983) TCGA-A6-5665-01 15 28437182 28437182 C T HERC2 Silent p.S2792S 0.47 TCGA-A6-5665-01 15 28441407 28441407 G A HERC2 Silent p.T2738T 0.36 TCGA-A6-5665-01 15 29488731 29488731 T A FAM189A1 Missense_Mutation p.E142V 0.39 deleterious(0) probably_damaging(0.937) TCGA-A6-5665-01 15 33927863 33927863 G A RYR3 Missense_Mutation p.R1075Q 0.39 probably_damaging(0.997) TCGA-A6-5665-01 15 34445260 34445260 G A KATNBL1 Nonsense_Mutation p.Q57* 0.31 TCGA-A6-5665-01 15 39883511 39883511 T C THBS1 Silent p.N791N 0.28 TCGA-A6-5665-01 15 40631782 40631782 C - C15orf52 Frame_Shift_Del p.M99Wfs*3 0.43 TCGA-A6-5665-01 15 40655857 40655857 A C DISP2 Missense_Mutation p.S51R 0.41 tolerated_low_confidence(0.07) possibly_damaging(0.733) TCGA-A6-5665-01 15 41989044 41989044 A - MGA Frame_Shift_Del p.R614Efs*7 0.32 TCGA-A6-5665-01 15 42054540 42054541 - A MGA Frame_Shift_Ins p.D2578Rfs*45 0.31 TCGA-A6-5665-01 15 42145951 42145951 C T SPTBN5 Missense_Mutation p.R3270Q 0.42 benign(0.036) TCGA-A6-5665-01 15 42511802 42511802 C T TMEM87A Missense_Mutation p.G506R 0.30 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 15 42717156 42717156 T C ZNF106 Missense_Mutation p.Q1666R 0.32 deleterious(0) probably_damaging(0.996) TCGA-A6-5665-01 15 42839520 42839520 C T LRRC57 Missense_Mutation p.R144Q 0.11 tolerated(0.49) benign(0.003) TCGA-A6-5665-01 15 43668402 43668402 A G TUBGCP4 Missense_Mutation p.Y62C 0.15 tolerated(0.06) benign(0.009) TCGA-A6-5665-01 15 43697454 43697454 A C TUBGCP4 3'UTR 0.28 TCGA-A6-5665-01 15 43815691 43815691 G A MAP1A Missense_Mutation p.A674T 0.49 benign(0.011) TCGA-A6-5665-01 15 43817825 43817825 C T MAP1A Missense_Mutation p.T1385I 0.35 benign(0.009) TCGA-A6-5665-01 15 44887633 44887633 A G SPG11 Missense_Mutation p.C1487R 0.40 deleterious(0) probably_damaging(0.983) TCGA-A6-5665-01 15 45403320 45403320 C T DUOX2 Missense_Mutation p.A291T 0.28 deleterious(0) possibly_damaging(0.645) TCGA-A6-5665-01 15 51040914 51040914 C T SPPL2A Missense_Mutation p.A111T 0.43 tolerated(0.08) benign(0.046) TCGA-A6-5665-01 15 51795023 51795023 A G DMXL2 Missense_Mutation p.I991T 0.42 tolerated(0.07) benign(0.031) TCGA-A6-5665-01 15 51809289 51809289 C T DMXL2 Missense_Mutation p.A838T 0.30 tolerated(0.09) possibly_damaging(0.462) TCGA-A6-5665-01 15 53081166 53081166 T C ONECUT1 Missense_Mutation p.K306E 0.40 deleterious(0) probably_damaging(0.994) TCGA-A6-5665-01 15 54916037 54916037 C A UNC13C Missense_Mutation p.R2082S 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-5665-01 15 55929380 55929380 A C PRTG Missense_Mutation p.L871V 0.37 tolerated(0.09) benign(0.07) TCGA-A6-5665-01 15 57734645 57734645 G A CGNL1 Missense_Mutation p.R591Q 0.35 deleterious(0) probably_damaging(0.994) TCGA-A6-5665-01 15 58247398 58247398 G C ALDH1A2 Silent p.S518S 0.31 TCGA-A6-5665-01 15 59179261 59179261 A C SLTM Silent p.A916A 0.20 TCGA-A6-5665-01 15 59397417 59397417 G T CCNB2 5'UTR 0.14 TCGA-A6-5665-01 15 60644600 60644600 C T ANXA2 Missense_Mutation p.V240M 0.32 tolerated(0.21) benign(0.026) TCGA-A6-5665-01 15 63551863 63551863 G T RAB8B Missense_Mutation p.S151I 0.35 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 15 63944674 63944674 G A HERC1 Missense_Mutation p.R3453C 0.09 probably_damaging(0.999) TCGA-A6-5665-01 15 64017553 64017553 G A HERC1 Missense_Mutation p.T1169I 0.37 benign(0.065) TCGA-A6-5665-01 15 64687662 64687662 C - TRIP4 Frame_Shift_Del p.Q113Rfs*31 0.22 TCGA-A6-5665-01 15 65392013 65392013 C - UBAP1L Frame_Shift_Del p.A247Hfs*22 0.42 TCGA-A6-5665-01 15 65688224 65688224 G A IGDCC4 Silent p.R425R 0.60 TCGA-A6-5665-01 15 65959826 65959826 T G DENND4A Silent p.G1733G 0.33 TCGA-A6-5665-01 15 66615042 66615042 A G DIS3L Silent p.V448V 0.33 TCGA-A6-5665-01 15 67878248 67878248 C T MAP2K5 Missense_Mutation p.R115W 0.35 deleterious(0) probably_damaging(0.996) TCGA-A6-5665-01 15 68122557 68122557 C T SKOR1 Silent p.P715P 0.36 TCGA-A6-5665-01 15 68502061 68502062 - A CLN6 Frame_Shift_Ins p.S194Qfs*8 0.29 TCGA-A6-5665-01 15 69728068 69728069 - GT KIF23 Frame_Shift_Ins p.N414* 0.27 TCGA-A6-5665-01 15 71146330 71146330 T C LARP6 Missense_Mutation p.D33G 0.41 tolerated_low_confidence(0.11) benign(0) TCGA-A6-5665-01 15 73551137 73551137 G A NEO1 Missense_Mutation p.R708Q 0.38 tolerated(0.43) probably_damaging(1) TCGA-A6-5665-01 15 73659846 73659846 G A HCN4 Missense_Mutation p.H256Y 0.30 deleterious(0) unknown(0) TCGA-A6-5665-01 15 74240213 74240213 C T LOXL1 Silent p.T524T 0.25 TCGA-A6-5665-01 15 74472408 74472408 A G STRA6 3'UTR 0.36 TCGA-A6-5665-01 15 76634202 76634202 G A ISL2 3'UTR 0.28 TCGA-A6-5665-01 15 77472306 77472306 C T PEAK1 Missense_Mutation p.E655K 0.33 tolerated(0.32) benign(0.195) TCGA-A6-5665-01 15 78290642 78290642 G A TBC1D2B Missense_Mutation p.R918W 0.38 deleterious(0.01) possibly_damaging(0.895) TCGA-A6-5665-01 15 78839018 78839018 T C PSMA4 Silent p.V203V 0.32 TCGA-A6-5665-01 15 79749636 79749636 T - KIAA1024 Frame_Shift_Del p.F384Sfs*121 0.35 TCGA-A6-5665-01 15 83935621 83935621 T C BNC1 Silent p.T134T 0.27 TCGA-A6-5665-01 15 84868451 84868451 A G AC136698.1 3'Flank 0.14 TCGA-A6-5665-01 15 85164970 85164970 C A ZSCAN2 Missense_Mutation p.S515Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-A6-5665-01 15 85166256 85166256 T - ZSCAN2 3'UTR 0.27 TCGA-A6-5665-01 15 86273848 86273849 - C AKAP13 Frame_Shift_Ins p.T2404Nfs*3 0.23 TCGA-A6-5665-01 15 86311930 86311930 G A KLHL25 Missense_Mutation p.A371V 0.42 tolerated(1) possibly_damaging(0.577) TCGA-A6-5665-01 15 87097632 87097633 - A AGBL1 Frame_Shift_Ins p.M908Nfs*57 0.29 TCGA-A6-5665-01 15 89400883 89400883 A G ACAN Silent p.A1689A 0.32 TCGA-A6-5665-01 15 89403636 89403636 C - ACAN Frame_Shift_Del p.P2306Lfs*10 0.39 TCGA-A6-5665-01 15 89424631 89424631 G A HAPLN3 Silent p.D150D 0.40 TCGA-A6-5665-01 15 89836041 89836041 A G FANCI Missense_Mutation p.I705M 0.35 tolerated(1) benign(0.023) TCGA-A6-5665-01 15 89867430 89867431 AG - POLG Frame_Shift_Del p.H659Qfs*24 0.21 TCGA-A6-5665-01 15 91026668 91026668 C A IQGAP1 Missense_Mutation p.L1211M 0.35 tolerated(1) benign(0.028) TCGA-A6-5665-01 15 91293061 91293061 A G BLM Missense_Mutation p.K188R 0.33 tolerated(0.19) benign(0.006) TCGA-A6-5665-01 15 91420825 91420825 C T FURIN Missense_Mutation p.A216V 0.44 deleterious(0) probably_damaging(0.943) TCGA-A6-5665-01 15 98508849 98508849 A G ARRDC4 Silent p.L109L 0.33 TCGA-A6-5665-01 15 99901642 99901642 A C LRRC28 Missense_Mutation p.E266A 0.36 tolerated(0.33) benign(0.001) TCGA-A6-5665-01 16 1020817 1020817 A G LMF1 Missense_Mutation p.V55A 0.40 tolerated(0.06) benign(0.085) TCGA-A6-5665-01 16 11000487 11000487 C T CIITA Missense_Mutation p.R380W 0.30 deleterious(0.02) benign(0.046) TCGA-A6-5665-01 16 11063057 11063057 T C CLEC16A Missense_Mutation p.V128A 0.29 deleterious(0.01) benign(0.298) TCGA-A6-5665-01 16 11260253 11260253 G A CLEC16A Missense_Mutation p.V884M 0.47 deleterious(0.01) possibly_damaging(0.873) TCGA-A6-5665-01 16 11367241 11367241 T C PRM3 Missense_Mutation p.Q71R 0.38 deleterious_low_confidence(0.03) benign(0.145) TCGA-A6-5665-01 16 11771052 11771052 T C SNN 3'UTR 0.37 TCGA-A6-5665-01 16 11794336 11794336 T A TXNDC11 Missense_Mutation p.Y293F 0.35 deleterious(0.03) possibly_damaging(0.86) TCGA-A6-5665-01 16 1308195 1308195 C T TPSD1 Missense_Mutation p.A219V 0.43 deleterious(0) probably_damaging(0.977) TCGA-A6-5665-01 16 1364356 1364356 C T UBE2I Silent p.C43C 0.31 TCGA-A6-5665-01 16 14234611 14234611 A - MKL2 Frame_Shift_Del p.N51Mfs*5 0.22 TCGA-A6-5665-01 16 1488130 1488130 G A CCDC154 Missense_Mutation p.A367V 0.40 deleterious(0.03) benign(0.149) TCGA-A6-5665-01 16 15130205 15130205 T A PDXDC1 3'UTR 0.34 TCGA-A6-5665-01 16 15761298 15761298 T C NDE1 Splice_Site p.X79_splice 0.36 TCGA-A6-5665-01 16 15820795 15820797 CTT - MYH11 In_Frame_Del p.K1263del 0.34 TCGA-A6-5665-01 16 15829229 15829229 T C MYH11 Missense_Mutation p.E1174G 0.32 possibly_damaging(0.706) TCGA-A6-5665-01 16 15834011 15834011 G A MYH11 Missense_Mutation p.A972V 0.35 benign(0.219) TCGA-A6-5665-01 16 16253348 16253348 C T ABCC6 Silent p.T1242T 0.45 TCGA-A6-5665-01 16 1657167 1657167 T C IFT140 Missense_Mutation p.Y34C 0.29 deleterious(0.04) possibly_damaging(0.497) TCGA-A6-5665-01 16 1816799 1816799 C T MAPK8IP3 Silent p.S1004S 0.36 TCGA-A6-5665-01 16 1872337 1872337 A CC HAGH Frame_Shift_Ins p.V93Gfs*20 0.20 TCGA-A6-5665-01 16 19127221 19127221 C A ITPRIPL2 Missense_Mutation p.L480I 0.21 deleterious(0.01) possibly_damaging(0.899) TCGA-A6-5665-01 16 19129378 19129379 TA - ITPRIPL2 3'UTR 0.33 TCGA-A6-5665-01 16 19725890 19725891 - T KNOP1 Frame_Shift_Ins p.A158Gfs*16 0.25 TCGA-A6-5665-01 16 2256088 2256088 T C MLST8 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) benign(0.003) TCGA-A6-5665-01 16 2293215 2293215 T C ECI1 Missense_Mutation p.T192A 0.37 deleterious(0.01) benign(0.166) TCGA-A6-5665-01 16 2304014 2304014 G - RNPS1 Frame_Shift_Del p.P290Rfs*39 0.45 TCGA-A6-5665-01 16 23221119 23221119 G A SCNN1G Missense_Mutation p.G376R 0.30 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 16 2336861 2336861 C T ABCA3 Missense_Mutation p.V1038I 0.41 tolerated(0.23) benign(0.013) TCGA-A6-5665-01 16 23492062 23492062 T C GGA2 Missense_Mutation p.T304A 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-A6-5665-01 16 23695252 23695252 G A PLK1 Missense_Mutation p.R293H 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 16 24231486 24231486 G A PRKCB 3'UTR 0.39 TCGA-A6-5665-01 16 24804909 24804909 G T TNRC6A Silent p.A1097A 0.47 TCGA-A6-5665-01 16 2495547 2495547 C A CCNF Silent p.R340R 0.33 TCGA-A6-5665-01 16 2499455 2499455 A G CCNF Missense_Mutation p.H464R 0.26 deleterious(0.05) probably_damaging(0.969) TCGA-A6-5665-01 16 2546935 2546935 G A RP11-20I23.1 Silent p.S262S 0.42 TCGA-A6-5665-01 16 27079317 27079317 C T C16orf82 RNA 0.39 TCGA-A6-5665-01 16 27236384 27236384 C T NSMCE1 3'UTR 0.25 TCGA-A6-5665-01 16 27512546 27512546 C T GTF3C1 Missense_Mutation p.R676Q 0.42 deleterious(0.02) probably_damaging(0.989) TCGA-A6-5665-01 16 27761540 27761540 C T KIAA0556 Nonsense_Mutation p.R1087* 0.35 TCGA-A6-5665-01 16 2819269 2819269 C - SRRM2 Frame_Shift_Del p.P2670Lfs*13 0.13 TCGA-A6-5665-01 16 28596995 28596995 C T CCDC101 Missense_Mutation p.R60C 0.21 deleterious(0) possibly_damaging(0.855) TCGA-A6-5665-01 16 28855652 28855652 C T TUFM Missense_Mutation p.R274H 0.33 deleterious(0.02) possibly_damaging(0.525) TCGA-A6-5665-01 16 28975239 28975239 T - NFATC2IP 3'UTR 0.30 TCGA-A6-5665-01 16 29110514 29110515 - T RRN3P2 RNA 0.23 TCGA-A6-5665-01 16 29855926 29855926 G A MVP Missense_Mutation p.V583M 0.43 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 16 2987296 2987296 G A FLYWCH1 Missense_Mutation p.R562H 0.22 deleterious(0.04) probably_damaging(1) TCGA-A6-5665-01 16 29996634 29996634 C T TAOK2 Missense_Mutation p.A508V 0.27 deleterious(0.05) possibly_damaging(0.521) TCGA-A6-5665-01 16 29998787 29998787 C T TAOK2 Missense_Mutation p.A1065V 0.34 tolerated_low_confidence(0.12) benign(0.005) TCGA-A6-5665-01 16 30435823 30435823 G - DCTPP1 Frame_Shift_Del p.Q82Kfs*25 0.33 TCGA-A6-5665-01 16 30537049 30537049 G A ZNF768 Missense_Mutation p.R138W 0.37 deleterious_low_confidence(0) benign(0) TCGA-A6-5665-01 16 30666121 30666121 C - PRR14 Frame_Shift_Del p.P279Qfs*2 0.32 TCGA-A6-5665-01 16 30736394 30736394 T C SRCAP Silent p.P1883P 0.26 TCGA-A6-5665-01 16 30748989 30748990 - C SRCAP Frame_Shift_Ins p.R2548Efs*3 0.32 TCGA-A6-5665-01 16 30750281 30750281 C - SRCAP Frame_Shift_Del p.L2975* 0.30 TCGA-A6-5665-01 16 30995218 30995218 C T SETD1A Silent p.I1666I 0.08 TCGA-A6-5665-01 16 31129152 31129152 G A KAT8 Silent p.E50E 0.43 TCGA-A6-5665-01 16 31142665 31142666 AA - KAT8 3'UTR 0.35 TCGA-A6-5665-01 16 31368624 31368624 C T ITGAX Silent p.T123T 0.36 TCGA-A6-5665-01 16 31926725 31926725 T C ZNF267 Silent p.C385C 0.19 TCGA-A6-5665-01 16 3544819 3544819 G A C16orf90 Silent p.Y35Y 0.23 TCGA-A6-5665-01 16 3639398 3639398 G - SLX4 Frame_Shift_Del p.P1414Hfs*36 0.37 TCGA-A6-5665-01 16 3652148 3652148 G A SLX4 Silent p.N307N 0.38 TCGA-A6-5665-01 16 3707755 3707755 G A DNASE1 Missense_Mutation p.V247I 0.20 tolerated(0.59) benign(0.025) TCGA-A6-5665-01 16 3779844 3779844 G A CREBBP Missense_Mutation p.T1735M 0.36 unknown(0) TCGA-A6-5665-01 16 4415032 4415032 C T CORO7 Silent p.V290V 0.11 TCGA-A6-5665-01 16 46638235 46638235 C T SHCBP1 Silent p.E276E 0.36 TCGA-A6-5665-01 16 4802320 4802320 T A ZNF500 3'UTR 0.50 TCGA-A6-5665-01 16 50701845 50701845 G - SNX20 3'Flank 0.53 TCGA-A6-5665-01 16 50745189 50745189 T C NOD2 Missense_Mutation p.L456P 0.32 deleterious(0.05) probably_damaging(0.936) TCGA-A6-5665-01 16 51172618 51172618 G A SALL1 Missense_Mutation p.T1172M 0.30 deleterious(0) possibly_damaging(0.715) TCGA-A6-5665-01 16 51173623 51173623 A T SALL1 Missense_Mutation p.I837N 0.36 tolerated(0.25) benign(0.105) TCGA-A6-5665-01 16 55361530 55361530 G A IRX6 Missense_Mutation p.R149H 0.42 deleterious(0) possibly_damaging(0.728) TCGA-A6-5665-01 16 55899900 55899900 G A CES5A Missense_Mutation p.A256V 0.33 deleterious(0) possibly_damaging(0.849) TCGA-A6-5665-01 16 57060420 57060420 C T NLRC5 Missense_Mutation p.A522V 0.40 deleterious(0) probably_damaging(0.974) TCGA-A6-5665-01 16 57060560 57060560 G C NLRC5 Missense_Mutation p.A569P 0.35 deleterious(0) probably_damaging(0.979) TCGA-A6-5665-01 16 57060685 57060685 A - NLRC5 Frame_Shift_Del p.K611Rfs*3 0.35 TCGA-A6-5665-01 16 57509517 57509517 T C DOK4 Missense_Mutation p.N64D 0.39 deleterious(0.01) benign(0.393) TCGA-A6-5665-01 16 57718032 57718032 G A GPR97 Missense_Mutation p.G357D 0.37 deleterious(0.01) probably_damaging(0.961) TCGA-A6-5665-01 16 57762412 57762412 G A CCDC135 Silent p.A769A 0.42 TCGA-A6-5665-01 16 57798116 57798116 C T KIFC3 Missense_Mutation p.G519D 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 16 61760991 61760991 T C CDH8 Intron 0.32 TCGA-A6-5665-01 16 65016103 65016103 A C CDH11 Silent p.T367T 0.23 TCGA-A6-5665-01 16 66514796 66514796 G A BEAN1 Missense_Mutation p.A250T 0.42 tolerated_low_confidence(0.09) benign(0.398) TCGA-A6-5665-01 16 66600043 66600043 C T CKLF 3'Flank 0.44 TCGA-A6-5665-01 16 66921396 66921397 - T PDP2 3'UTR 0.27 TCGA-A6-5665-01 16 67006804 67006804 C T CES3 Missense_Mutation p.A523V 0.41 tolerated(0.08) benign(0.004) TCGA-A6-5665-01 16 67286674 67286674 C T SLC9A5 Silent p.A139A 0.34 TCGA-A6-5665-01 16 67325658 67325658 G - KCTD19 Frame_Shift_Del p.V768Wfs*38 0.28 TCGA-A6-5665-01 16 67645275 67645276 - G CTCF Frame_Shift_Ins p.E182Gfs*9 0.29 TCGA-A6-5665-01 16 67877489 67877489 G A THAP11 3'UTR 0.34 TCGA-A6-5665-01 16 69362907 69362907 A G RP11-343C2.12 3'UTR 0.43 TCGA-A6-5665-01 16 70191931 70191931 A G PDPR 3'UTR 0.38 TCGA-A6-5665-01 16 70291982 70291983 - G AARS Frame_Shift_Ins p.S711Lfs*11 0.32 TCGA-A6-5665-01 16 70500793 70500793 G A FUK Silent p.P140P 0.45 TCGA-A6-5665-01 16 70564669 70564669 T C SF3B3 Missense_Mutation p.L140S 0.13 deleterious(0) probably_damaging(0.988) TCGA-A6-5665-01 16 70765408 70765408 A C VAC14 Missense_Mutation p.F551V 0.47 deleterious(0.01) possibly_damaging(0.745) TCGA-A6-5665-01 16 70867941 70867941 C A HYDIN Missense_Mutation p.G4510W 0.17 probably_damaging(0.991) TCGA-A6-5665-01 16 70928376 70928376 C T HYDIN Missense_Mutation p.R3075H 0.20 probably_damaging(0.923) TCGA-A6-5665-01 16 70954735 70954735 C T HYDIN Missense_Mutation p.R2515H 0.50 probably_damaging(0.923) TCGA-A6-5665-01 16 71007853 71007854 - GA HYDIN Frame_Shift_Ins p.R1703Lfs*51 0.16 TCGA-A6-5665-01 16 71015443 71015443 A G HYDIN Missense_Mutation p.V1454A 0.36 benign(0.086) TCGA-A6-5665-01 16 71318026 71318026 G A CMTR2 Nonsense_Mutation p.R600* 0.40 TCGA-A6-5665-01 16 71319273 71319273 A C CMTR2 Missense_Mutation p.L184R 0.34 tolerated(0.24) possibly_damaging(0.864) TCGA-A6-5665-01 16 72033862 72033862 C T PKD1L3 RNA 0.39 TCGA-A6-5665-01 16 72829330 72829330 G A ZFHX3 Silent p.A2417A 0.32 TCGA-A6-5665-01 16 735686 735686 G A WDR24 Silent p.H557H 0.33 TCGA-A6-5665-01 16 75270802 75270802 A C BCAR1 Missense_Mutation p.L343R 0.28 tolerated(0.09) benign(0.197) TCGA-A6-5665-01 16 75276825 75276825 C T BCAR1 Missense_Mutation p.R105H 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 16 75651065 75651065 A - ADAT1 Frame_Shift_Del p.F133Lfs*39 0.29 TCGA-A6-5665-01 16 77228855 77228855 C T MON1B Missense_Mutation p.R367W 0.34 deleterious(0) probably_damaging(0.992) TCGA-A6-5665-01 16 79633406 79633406 C T MAF Missense_Mutation p.A132T 0.33 tolerated(0.28) unknown(0) TCGA-A6-5665-01 16 79633542 79633542 C T MAF Silent p.A86A 0.29 TCGA-A6-5665-01 16 81321001 81321001 T C BCMO1 Silent p.D468D 0.40 TCGA-A6-5665-01 16 81390538 81390538 C T GAN Missense_Mutation p.A261V 0.36 tolerated(0.25) benign(0.163) TCGA-A6-5665-01 16 824958 824958 G A MSLNL Silent p.D538D 0.62 TCGA-A6-5665-01 16 84088008 84088008 G A MBTPS1 3'UTR 0.40 TCGA-A6-5665-01 16 84217098 84217098 C T TAF1C Missense_Mutation p.G79D 0.46 deleterious(0.01) probably_damaging(1) TCGA-A6-5665-01 16 84229964 84229964 G A ADAD2 Missense_Mutation p.R587H 0.34 tolerated(0.16) benign(0.071) TCGA-A6-5665-01 16 84255863 84255863 A C KCNG4 Missense_Mutation p.L507R 0.33 tolerated_low_confidence(0.27) benign(0.074) TCGA-A6-5665-01 16 84486825 84486825 C T ATP2C2 Missense_Mutation p.A638V 0.36 tolerated(0.15) benign(0.012) TCGA-A6-5665-01 16 84900531 84900531 G A CRISPLD2 Silent p.T246T 0.38 TCGA-A6-5665-01 16 85699582 85699582 A - GSE1 Frame_Shift_Del p.E920Dfs*47 0.28 TCGA-A6-5665-01 16 86612776 86612776 C T FOXL1 Silent p.P149P 0.38 TCGA-A6-5665-01 16 8719632 8719632 G A METTL22 Missense_Mutation p.R37Q 0.33 deleterious(0) probably_damaging(0.987) TCGA-A6-5665-01 16 87678036 87678036 G T JPH3 Silent p.V185V 0.38 TCGA-A6-5665-01 16 87743238 87743239 - C KLHDC4 Frame_Shift_Ins p.R361Qfs*9 0.36 TCGA-A6-5665-01 16 88504231 88504231 C T ZNF469 Silent p.R3423R 0.50 TCGA-A6-5665-01 16 8941656 8941656 A G PMM2 Missense_Mutation p.R239G 0.12 deleterious(0.04) benign(0.001) TCGA-A6-5665-01 16 89623406 89623406 G A SPG7 Missense_Mutation p.D765N 0.45 deleterious(0.05) benign(0.254) TCGA-A6-5665-01 16 90095694 90095695 - G C16orf3 Frame_Shift_Ins p.P20Tfs*10 0.29 TCGA-A6-5665-01 17 10431067 10431067 G A MYH2 Missense_Mutation p.S1290F 0.32 deleterious(0.05) benign(0.353) TCGA-A6-5665-01 17 10448712 10448712 C T MYH2 Silent p.P152P 0.42 TCGA-A6-5665-01 17 11666872 11666872 G T DNAH9 Nonsense_Mutation p.E2371* 0.34 TCGA-A6-5665-01 17 16004981 16004981 T C NCOR1 Missense_Mutation p.E758G 0.34 benign(0.031) TCGA-A6-5665-01 17 16456328 16456328 T A ZNF287 Missense_Mutation p.K376N 0.35 tolerated(0.07) possibly_damaging(0.647) TCGA-A6-5665-01 17 1657658 1657658 C A SERPINF2 Missense_Mutation p.P436T 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 17 17046919 17046919 C - MPRIP Frame_Shift_Del p.L364Cfs*19 0.17 TCGA-A6-5665-01 17 18138798 18138799 - G LLGL1 Frame_Shift_Ins p.R436Pfs*18 0.39 TCGA-A6-5665-01 17 1840454 1840454 C T RTN4RL1 Missense_Mutation p.R221H 0.36 tolerated(0.14) benign(0.014) TCGA-A6-5665-01 17 18565018 18565018 T C ZNF286B 3'UTR 0.30 TCGA-A6-5665-01 17 18565856 18565856 G A ZNF286B Silent p.H321H 0.40 TCGA-A6-5665-01 17 2202992 2202992 A G SMG6 Missense_Mutation p.V352A 0.35 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-A6-5665-01 17 2341478 2341478 C T METTL16 Silent p.T271T 0.32 TCGA-A6-5665-01 17 26727821 26727821 G T SARM1 3'UTR 0.23 TCGA-A6-5665-01 17 27002064 27002064 A - SUPT6H Frame_Shift_Del p.E143Kfs*51 0.30 TCGA-A6-5665-01 17 27005876 27005876 G A SUPT6H Missense_Mutation p.R415Q 0.30 tolerated(0.22) benign(0.034) TCGA-A6-5665-01 17 27237191 27237191 G A PHF12 Intron 0.40 TCGA-A6-5665-01 17 28296060 28296061 - A EFCAB5 Frame_Shift_Ins p.L151Tfs*3 0.23 TCGA-A6-5665-01 17 28417501 28417501 C T EFCAB5 Missense_Mutation p.T1249M 0.36 tolerated(0.21) probably_damaging(0.949) TCGA-A6-5665-01 17 28512069 28512070 AG - NSRP1 Frame_Shift_Del p.D353Ffs*7 0.31 TCGA-A6-5665-01 17 29111327 29111327 G A CRLF3 Nonsense_Mutation p.R403* 0.39 TCGA-A6-5665-01 17 29222030 29222030 T C ATAD5 3'UTR 0.40 TCGA-A6-5665-01 17 29226598 29226598 A G TEFM Silent p.P224P 0.30 TCGA-A6-5665-01 17 29231390 29231390 C T TEFM Silent p.K63K 0.30 TCGA-A6-5665-01 17 30665249 30665249 C A C17orf75 Missense_Mutation p.G157W 0.32 deleterious(0) probably_damaging(0.94) TCGA-A6-5665-01 17 31439005 31439005 C - ASIC2 Frame_Shift_Del p.T264Qfs*32 0.31 TCGA-A6-5665-01 17 32647978 32647979 - C CCL8 3'UTR 0.32 TCGA-A6-5665-01 17 33443879 33443879 G A RAD51D Missense_Mutation p.R108C 0.40 deleterious(0.02) benign(0.022) TCGA-A6-5665-01 17 33482447 33482447 C T UNC45B Missense_Mutation p.R258W 0.28 deleterious(0.02) benign(0.209) TCGA-A6-5665-01 17 33520233 33520235 CTC - SLC35G3 3'UTR 0.51 TCGA-A6-5665-01 17 35300117 35300117 C T LHX1 Nonsense_Mutation p.Q304* 0.31 TCGA-A6-5665-01 17 35634861 35634861 A G ACACA Silent p.P216P 0.35 TCGA-A6-5665-01 17 3628131 3628132 - AG GSG2 Frame_Shift_Ins p.G304Efs*26 0.40 TCGA-A6-5665-01 17 36482378 36482378 A G GPR179 Silent p.P2358P 0.35 TCGA-A6-5665-01 17 3653695 3653695 C T ITGAE Missense_Mutation p.G659S 0.39 deleterious(0.01) possibly_damaging(0.536) TCGA-A6-5665-01 17 36872013 36872013 G A MLLT6 Missense_Mutation p.S323N 0.31 deleterious(0.02) unknown(0) TCGA-A6-5665-01 17 36997620 36997620 C T C17orf98 Missense_Mutation p.R8H 0.39 tolerated(0.53) benign(0.145) TCGA-A6-5665-01 17 37188600 37188600 C T LRRC37A11P RNA 0.23 TCGA-A6-5665-01 17 37341039 37341039 C T CACNB1 Missense_Mutation p.E243K 0.42 deleterious(0.02) probably_damaging(0.994) TCGA-A6-5665-01 17 37667784 37667784 G A CDK12 Missense_Mutation p.R890H 0.42 probably_damaging(0.999) TCGA-A6-5665-01 17 38643420 38643420 A G TNS4 Missense_Mutation p.S386P 0.31 tolerated(0.96) benign(0.001) TCGA-A6-5665-01 17 38926014 38926014 T C KRT26 Missense_Mutation p.M321V 0.32 tolerated(0.06) benign(0.002) TCGA-A6-5665-01 17 39221623 39221623 A - KRTAP2-4 3'UTR 0.79 TCGA-A6-5665-01 17 39274085 39274085 C T KRTAP4-11 Silent p.L161L 0.32 TCGA-A6-5665-01 17 40010578 40010578 C T KLHL11 Missense_Mutation p.R514Q 0.09 tolerated(0.61) benign(0.031) TCGA-A6-5665-01 17 40120697 40120697 C T CNP Silent p.A205A 0.33 TCGA-A6-5665-01 17 40128846 40128846 T C CNP 3'UTR 0.24 TCGA-A6-5665-01 17 40485938 40485938 G A STAT3 Silent p.I309I 0.32 TCGA-A6-5665-01 17 40823094 40823094 C T PLEKHH3 Missense_Mutation p.A447T 0.37 deleterious(0) unknown(0) TCGA-A6-5665-01 17 40998104 40998104 T C AOC2 Silent p.G487G 0.29 TCGA-A6-5665-01 17 41004929 41004929 C T AOC3 Silent p.S523S 0.45 TCGA-A6-5665-01 17 41352627 41352627 T C NBR1 Splice_Site p.X823_splice 0.32 TCGA-A6-5665-01 17 41832939 41832939 C T SOST Missense_Mutation p.R138H 0.19 tolerated(0.81) probably_damaging(0.974) TCGA-A6-5665-01 17 41836050 41836050 T C SOST Silent p.V20V 0.37 TCGA-A6-5665-01 17 43006378 43006378 A G KIF18B Missense_Mutation p.V511A 0.23 deleterious(0) possibly_damaging(0.542) TCGA-A6-5665-01 17 43227523 43227528 GCGGGA - HEXIM1 In_Frame_Del p.R323_E324del 0.58 TCGA-A6-5665-01 17 44110492 44110492 G A KANSL1 Missense_Mutation p.R931W 0.35 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 17 4434061 4434061 C T SPNS2 Silent p.F236F 0.32 TCGA-A6-5665-01 17 4453364 4453364 T C MYBBP1A Silent p.S436S 0.36 TCGA-A6-5665-01 17 45748172 45748172 T C KPNB1 Silent p.V507V 0.35 TCGA-A6-5665-01 17 45822226 45822226 C A TBX21 Missense_Mutation p.R368S 0.26 tolerated(0.06) benign(0.065) TCGA-A6-5665-01 17 46030355 46030356 CA - PRR15L Frame_Shift_Del p.V82Efs*9 0.14 TCGA-A6-5665-01 17 4644304 4644304 C - ZMYND15 Frame_Shift_Del p.Q156Rfs*55 0.50 TCGA-A6-5665-01 17 46622002 46622002 G - HOXB2 Frame_Shift_Del p.P91Rfs*8 0.43 TCGA-A6-5665-01 17 47210487 47210487 G A B4GALNT2 Missense_Mutation p.G34R 0.19 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-A6-5665-01 17 48072399 48072399 G A DLX3 5'UTR 0.26 TCGA-A6-5665-01 17 4840991 4840991 G A SLC25A11 3'UTR 0.35 TCGA-A6-5665-01 17 48447367 48447367 A G MRPL27 Intron 0.37 TCGA-A6-5665-01 17 4848973 4848973 A - PFN1 3'UTR 0.41 TCGA-A6-5665-01 17 4876936 4876936 C T CAMTA2 Silent p.L738L 0.40 TCGA-A6-5665-01 17 4904132 4904132 T C KIF1C Missense_Mutation p.S58P 0.39 deleterious(0) probably_damaging(0.941) TCGA-A6-5665-01 17 49075927 49075927 T C SPAG9 Silent p.P572P 0.35 TCGA-A6-5665-01 17 49237348 49237348 A C NME1 Missense_Mutation p.E70A 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-A6-5665-01 17 4925855 4925855 G T KIF1C Missense_Mutation p.G827W 0.40 deleterious_low_confidence(0.01) benign(0.332) TCGA-A6-5665-01 17 49337911 49337911 C T UTP18 5'UTR 0.30 TCGA-A6-5665-01 17 4995224 4995224 C T ZFP3 Missense_Mutation p.T142I 0.33 tolerated(0.22) benign(0.211) TCGA-A6-5665-01 17 5329581 5329583 GTG - RPAIN In_Frame_Del p.V153del 0.40 TCGA-A6-5665-01 17 54893351 54893351 G A C17orf67 5'UTR 0.44 TCGA-A6-5665-01 17 556559 556560 - C VPS53 Frame_Shift_Ins p.I194Dfs*17 0.29 TCGA-A6-5665-01 17 55948675 55948675 G A CUEDC1 Silent p.N280N 0.41 TCGA-A6-5665-01 17 56082962 56082962 C A SRSF1 Splice_Site p.X185_splice 0.40 TCGA-A6-5665-01 17 56329847 56329847 G A LPO Missense_Mutation p.R362H 0.34 deleterious(0.05) benign(0.002) TCGA-A6-5665-01 17 56349028 56349028 C A MPO Missense_Mutation p.R673L 0.37 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 17 56400901 56400901 C T BZRAP1 Silent p.T316T 0.33 TCGA-A6-5665-01 17 56597775 56597775 G A SEPT4 3'UTR 0.40 TCGA-A6-5665-01 17 56638916 56638916 G A TEX14 Silent p.S1420S 0.24 TCGA-A6-5665-01 17 57060030 57060030 T C PPM1E 3'Flank 0.20 TCGA-A6-5665-01 17 57165742 57165742 A G TRIM37 Missense_Mutation p.V64A 0.39 deleterious(0) possibly_damaging(0.488) TCGA-A6-5665-01 17 57760012 57760012 A - CLTC Frame_Shift_Del p.M1210Cfs*52 0.27 TCGA-A6-5665-01 17 58042087 58042087 C T RNFT1 5'Flank 0.28 TCGA-A6-5665-01 17 59093128 59093128 A G BCAS3 Silent p.Q501Q 0.44 TCGA-A6-5665-01 17 59482792 59482792 C T TBX2 Silent p.A427A 0.60 TCGA-A6-5665-01 17 59485480 59485480 C A TBX2 Silent p.A584A 0.46 TCGA-A6-5665-01 17 59557541 59557541 C T TBX4 Silent p.L294L 0.29 TCGA-A6-5665-01 17 59878727 59878727 G T BRIP1 Missense_Mutation p.L343M 0.36 deleterious(0.01) possibly_damaging(0.692) TCGA-A6-5665-01 17 6021344 6021344 G A WSCD1 Missense_Mutation p.R404H 0.42 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 17 60689891 60689891 A G TLK2 Missense_Mutation p.T740A 0.28 tolerated_low_confidence(0.17) benign(0.003) TCGA-A6-5665-01 17 61392030 61392030 C T TANC2 Missense_Mutation p.H407Y 0.42 tolerated(0.61) benign(0.34) TCGA-A6-5665-01 17 61613451 61613451 G A KCNH6 Intron 0.31 TCGA-A6-5665-01 17 61788088 61788088 C T STRADA Missense_Mutation p.G153S 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-A6-5665-01 17 61949480 61949480 G A CSH2 3'UTR 0.36 TCGA-A6-5665-01 17 62142576 62142576 G A ERN1 Missense_Mutation p.A305V 0.32 tolerated(0.06) benign(0.26) TCGA-A6-5665-01 17 62850671 62850671 C T LRRC37A3 3'UTR 0.41 TCGA-A6-5665-01 17 6545595 6545596 - A TXNDC17 Frame_Shift_Ins p.N87Kfs*12 0.27 TCGA-A6-5665-01 17 65688709 65688709 G A PITPNC1 Missense_Mutation p.R235Q 0.32 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 17 66303473 66303473 G A ARSG 5'UTR 0.38 TCGA-A6-5665-01 17 71394314 71394314 G A SDK2 Missense_Mutation p.R1072C 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-A6-5665-01 17 71398172 71398172 T C SDK2 Missense_Mutation p.T865A 0.34 tolerated(0.06) benign(0.12) TCGA-A6-5665-01 17 7158073 7158074 CA - ELP5 Frame_Shift_Del p.C139Pfs*15 0.31 TCGA-A6-5665-01 17 72233586 72233586 G - TTYH2 Frame_Shift_Del p.V190Cfs*9 0.37 TCGA-A6-5665-01 17 7224531 7224531 G A NEURL4 Missense_Mutation p.T1087M 0.33 tolerated(0.09) benign(0.432) TCGA-A6-5665-01 17 72350656 72350656 A G KIF19 Silent p.R888R 0.43 TCGA-A6-5665-01 17 72767941 72767941 G A NAT9 Silent p.S182S 0.32 TCGA-A6-5665-01 17 729261 729261 C T NXN Missense_Mutation p.A140T 0.31 tolerated(0.06) benign(0.116) TCGA-A6-5665-01 17 72942831 72942832 - C OTOP3 Frame_Shift_Ins p.F296Lfs*4 0.34 TCGA-A6-5665-01 17 72952016 72952016 C T HID1 Missense_Mutation p.A503T 0.43 deleterious(0) probably_damaging(0.933) TCGA-A6-5665-01 17 72955018 72955018 G A HID1 Silent p.C379C 0.29 TCGA-A6-5665-01 17 73569144 73569144 C T LLGL2 Missense_Mutation p.A837V 0.37 deleterious(0) probably_damaging(0.933) TCGA-A6-5665-01 17 73917601 73917601 T C FBF1 Missense_Mutation p.T508A 0.34 tolerated(1) benign(0.001) TCGA-A6-5665-01 17 74077588 74077588 C - EXOC7 3'Flank 0.39 TCGA-A6-5665-01 17 74087247 74087247 C T EXOC7 Missense_Mutation p.G293D 0.18 deleterious(0.02) benign(0.03) TCGA-A6-5665-01 17 74271984 74271984 C T QRICH2 Missense_Mutation p.V1634M 0.39 tolerated(0.1) possibly_damaging(0.569) TCGA-A6-5665-01 17 7470305 7470305 A - SENP3 Frame_Shift_Del p.R443Gfs*15 0.09 TCGA-A6-5665-01 17 74733100 74733100 T C SRSF2 Missense_Mutation p.D48G 0.37 deleterious(0) probably_damaging(0.99) TCGA-A6-5665-01 17 74921060 74921060 A G MGAT5B Silent p.V357V 0.31 TCGA-A6-5665-01 17 7534640 7534641 - G SHBG Frame_Shift_Ins p.L175Afs*39 0.31 TCGA-A6-5665-01 17 76083032 76083032 C A TNRC6C Silent p.P1217P 0.31 TCGA-A6-5665-01 17 76089786 76089786 T C TNRC6C Silent p.T1413T 0.29 TCGA-A6-5665-01 17 7640511 7640511 C T DNAH2 Missense_Mutation p.R369C 0.37 benign(0.127) TCGA-A6-5665-01 17 76490179 76490179 T C DNAH17 Missense_Mutation p.E2102G 0.36 probably_damaging(0.993) TCGA-A6-5665-01 17 76498624 76498624 T - DNAH17-AS1 3'UTR 0.17 TCGA-A6-5665-01 17 76887759 76887759 G A DDC8 Missense_Mutation p.A276V 0.38 deleterious(0.03) possibly_damaging(0.556) TCGA-A6-5665-01 17 7736185 7736185 G A DNAH2 Missense_Mutation p.S4306N 0.39 benign(0.012) TCGA-A6-5665-01 17 77769888 77769888 G A CBX8 Missense_Mutation p.R72C 0.40 deleterious(0) probably_damaging(0.973) TCGA-A6-5665-01 17 78968429 78968429 G A CHMP6 Missense_Mutation p.A38T 0.27 tolerated(1) benign(0.001) TCGA-A6-5665-01 17 78973702 78973702 C T CHMP6 3'UTR 0.29 TCGA-A6-5665-01 17 79080609 79080609 C - BAIAP2 Frame_Shift_Del p.D470Ifs*41 0.41 TCGA-A6-5665-01 17 79090173 79090173 C - BAIAP2 3'UTR 0.31 TCGA-A6-5665-01 17 79496150 79496150 G A FSCN2 Missense_Mutation p.G198D 0.23 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 17 79508405 79508405 T C C17orf70 Missense_Mutation p.Q815R 0.31 tolerated(0.17) benign(0.081) TCGA-A6-5665-01 17 79801701 79801701 G A P4HB 3'UTR 0.46 TCGA-A6-5665-01 17 7983557 7983557 G A AC129492.6 Missense_Mutation p.D80N 0.27 possibly_damaging(0.737) TCGA-A6-5665-01 17 79870176 79870176 C T SIRT7 3'UTR 0.34 TCGA-A6-5665-01 17 79892925 79892925 C A PYCR1 Silent p.T139T 0.52 TCGA-A6-5665-01 17 79914601 79914601 G A NOTUM Missense_Mutation p.R305C 0.40 deleterious(0.02) probably_damaging(0.93) TCGA-A6-5665-01 17 80039082 80039082 G A FASN Missense_Mutation p.R2185W 0.33 deleterious(0.01) benign(0.022) TCGA-A6-5665-01 17 80196894 80196894 A G SLC16A3 3'UTR 0.30 TCGA-A6-5665-01 17 80395135 80395135 G A HEXDC Silent p.V265V 0.28 TCGA-A6-5665-01 17 80400298 80400298 G - HEXDC Frame_Shift_Del p.A532Lfs*41 0.29 TCGA-A6-5665-01 17 80577000 80577000 G A WDR45B Missense_Mutation p.T208M 0.33 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 17 9830078 9830078 G A GAS7 Silent p.S298S 0.42 TCGA-A6-5665-01 18 120859 120859 A G ROCK1P1 RNA 0.10 TCGA-A6-5665-01 18 12325723 12325723 C T TUBB6 Missense_Mutation p.T312I 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-5665-01 18 12674557 12674557 G A CEP76 Missense_Mutation p.R607C 0.39 deleterious(0) probably_damaging(0.959) TCGA-A6-5665-01 18 13008509 13008509 C A CEP192 Silent p.L115L 0.31 TCGA-A6-5665-01 18 13029857 13029857 A G CEP192 Missense_Mutation p.T416A 0.37 tolerated(0.51) benign(0.002) TCGA-A6-5665-01 18 13069141 13069142 - A CEP192 Frame_Shift_Ins p.N1674Kfs*6 0.20 TCGA-A6-5665-01 18 18571274 18571274 A G ROCK1 Missense_Mutation p.L669S 0.05 tolerated(0.08) benign(0.206) TCGA-A6-5665-01 18 20768803 20768803 C T CABLES1 Missense_Mutation p.R283W 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-A6-5665-01 18 20833707 20833707 T C CABLES1 Missense_Mutation p.M523T 0.31 deleterious(0.01) possibly_damaging(0.747) TCGA-A6-5665-01 18 21083644 21083644 A G C18orf8 Missense_Mutation p.N21S 0.23 tolerated(1) benign(0) TCGA-A6-5665-01 18 21121137 21121137 A G NPC1 Silent p.G803G 0.25 TCGA-A6-5665-01 18 21418836 21418836 A G LAMA3 Missense_Mutation p.N1062S 0.35 benign(0.009) TCGA-A6-5665-01 18 21453109 21453109 G - LAMA3 Intron 0.28 TCGA-A6-5665-01 18 24127558 24127558 A G KCTD1 Intron 0.28 TCGA-A6-5665-01 18 246322 246322 A G THOC1 Splice_Site p.X306_splice 0.30 TCGA-A6-5665-01 18 28710636 28710636 A G DSC1 Silent p.H842H 0.33 TCGA-A6-5665-01 18 2891432 2891432 G A EMILIN2 Missense_Mutation p.R436H 0.33 tolerated(0.37) benign(0.016) TCGA-A6-5665-01 18 29099832 29099832 G A DSG2 Missense_Mutation p.A50T 0.28 deleterious(0.04) benign(0.027) TCGA-A6-5665-01 18 29126710 29126710 G A DSG2 3'UTR 0.30 TCGA-A6-5665-01 18 30350138 30350138 G A KLHL14 Silent p.L139L 0.24 TCGA-A6-5665-01 18 31803075 31803075 G - NOL4 Frame_Shift_Del p.T48Rfs*44 0.31 TCGA-A6-5665-01 18 319924 319946 TCAGTAATTGGTTTTCAGTGCTT CAGTAATTGGTTTTCAGTGC COLEC12 3'UTR 0.20 TCGA-A6-5665-01 18 32953520 32953520 T C ZNF396 Silent p.A154A 0.35 TCGA-A6-5665-01 18 33484803 33484803 T C MIR187 RNA 0.45 TCGA-A6-5665-01 18 33573150 33573150 G A RPRD1A Silent p.H301H 0.15 TCGA-A6-5665-01 18 3447618 3447618 G - TGIF1 5'Flank 0.28 TCGA-A6-5665-01 18 43247003 43247003 G T SLC14A2 Missense_Mutation p.S554I 0.31 tolerated(0.39) benign(0.355) TCGA-A6-5665-01 18 43565231 43565231 A C PSTPIP2 3'UTR 0.28 TCGA-A6-5665-01 18 44036553 44036553 C T RNF165 Missense_Mutation p.P332L 0.39 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 18 44260243 44260243 C T ST8SIA5 Missense_Mutation p.R298H 0.40 probably_damaging(0.999) TCGA-A6-5665-01 18 44559624 44559625 - C TCEB3B Frame_Shift_Ins p.E671Gfs*37 0.29 TCGA-A6-5665-01 18 44682601 44682601 G A IER3IP1 Missense_Mutation p.P66S 0.39 deleterious(0.02) probably_damaging(0.961) TCGA-A6-5665-01 18 46343637 46343637 C T CTIF Missense_Mutation p.R475C 0.31 deleterious(0.03) possibly_damaging(0.742) TCGA-A6-5665-01 18 46386044 46386044 G T CTIF 3'UTR 0.23 TCGA-A6-5665-01 18 46570518 46570518 A - DYM Frame_Shift_Del p.F639Lfs*81 0.35 TCGA-A6-5665-01 18 47463627 47463627 G A MYO5B Silent p.T631T 0.27 TCGA-A6-5665-01 18 47800682 47800682 G T MBD1 Silent p.A340A 0.48 TCGA-A6-5665-01 18 48256306 48256306 C T MAPK4 3'UTR 0.29 TCGA-A6-5665-01 18 55024166 55024166 G A ST8SIA3 Missense_Mutation p.D109N 0.35 benign(0.32) TCGA-A6-5665-01 18 55328504 55328504 G T ATP8B1 Missense_Mutation p.P870H 0.41 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 18 55335755 55335755 A G ATP8B1 Silent p.A705A 0.28 TCGA-A6-5665-01 18 5892001 5892001 G - TMEM200C Frame_Shift_Del p.P21Qfs*22 0.36 TCGA-A6-5665-01 18 59947644 59947644 G A KIAA1468 Missense_Mutation p.A1007T 0.29 deleterious(0) probably_damaging(0.955) TCGA-A6-5665-01 18 61449616 61449616 C A SERPINB7 Missense_Mutation p.L4I 0.37 tolerated(0.22) probably_damaging(0.997) TCGA-A6-5665-01 18 61654270 61654270 G A SERPINB8 Missense_Mutation p.A295T 0.33 tolerated(0.18) benign(0.034) TCGA-A6-5665-01 18 65180906 65180906 A G DSEL Missense_Mutation p.F324L 0.39 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 18 67742693 67742693 A - RTTN Frame_Shift_Del p.Y1487Mfs*4 0.30 TCGA-A6-5665-01 18 67996614 67996614 C T SOCS6 3'UTR 0.30 TCGA-A6-5665-01 18 6964700 6964700 G A LAMA1 Missense_Mutation p.P2433L 0.44 tolerated(0.1) possibly_damaging(0.573) TCGA-A6-5665-01 18 6965298 6965298 T G LAMA1 Missense_Mutation p.N2395T 0.32 tolerated(1) probably_damaging(0.951) TCGA-A6-5665-01 18 7080298 7080298 C T LAMA1 Missense_Mutation p.A74T 0.37 tolerated(0.54) benign(0.037) TCGA-A6-5665-01 18 71740713 71740713 A G FBXO15 Missense_Mutation p.F506L 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-A6-5665-01 18 73001231 73001231 A - TSHZ1 3'UTR 0.26 TCGA-A6-5665-01 18 74963024 74963024 C T GALR1 Nonsense_Mutation p.Q174* 0.38 TCGA-A6-5665-01 18 77221333 77221333 G A NFATC1 Missense_Mutation p.M629I 0.41 deleterious(0.01) benign(0.027) TCGA-A6-5665-01 18 77246932 77246932 A G NFATC1 Missense_Mutation p.D913G 0.33 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 18 77623870 77623870 A G KCNG2 Missense_Mutation p.E68G 0.16 deleterious(0) probably_damaging(0.971) TCGA-A6-5665-01 18 77926887 77926887 T C AC139100.2 3'UTR 0.37 TCGA-A6-5665-01 19 10162978 10162978 G A C3P1 Intron 0.37 TCGA-A6-5665-01 19 10218653 10218653 G A PPAN Missense_Mutation p.R119H 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-A6-5665-01 19 10402932 10402932 C T ICAM5 Nonsense_Mutation p.Q299* 0.22 TCGA-A6-5665-01 19 1056953 1056953 C T ABCA7 Missense_Mutation p.A1545V 0.41 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 19 10610686 10610686 G A KEAP1 Silent p.S8S 0.51 TCGA-A6-5665-01 19 10668498 10668498 C T KRI1 Missense_Mutation p.R484H 0.38 deleterious(0.01) possibly_damaging(0.656) TCGA-A6-5665-01 19 10747171 10747171 C T SLC44A2 Missense_Mutation p.A469V 0.39 deleterious(0) probably_damaging(0.98) TCGA-A6-5665-01 19 10829036 10829036 C T DNM2 Nonsense_Mutation p.Q40* 0.32 TCGA-A6-5665-01 19 11240346 11240346 G A LDLR Silent p.S849S 0.45 TCGA-A6-5665-01 19 11664586 11664586 T C ELOF1 Missense_Mutation p.D76G 0.30 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 19 11918418 11918418 T - ZNF491 3'UTR 0.27 TCGA-A6-5665-01 19 12127466 12127467 TC - ZNF433 Frame_Shift_Del p.R72Tfs*3 0.29 TCGA-A6-5665-01 19 12863560 12863560 T G BEST2 Splice_Site p.X51_splice 0.34 TCGA-A6-5665-01 19 1295724 1295724 C T EFNA2 Silent p.R107R 0.46 TCGA-A6-5665-01 19 13060147 13060147 G T RAD23A Missense_Mutation p.Q246H 0.31 deleterious(0) possibly_damaging(0.896) TCGA-A6-5665-01 19 13218572 13218572 C T TRMT1 Missense_Mutation p.R500H 0.31 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 19 13397337 13397338 - G CACNA1A Frame_Shift_Ins p.L1178Pfs*38 0.26 TCGA-A6-5665-01 19 13873608 13873609 - C CCDC130 Frame_Shift_Ins p.Q308Pfs*35 0.57 TCGA-A6-5665-01 19 13882968 13882968 C - MRI1 Frame_Shift_Del p.H330Tfs*24 0.29 TCGA-A6-5665-01 19 14159994 14159994 C T IL27RA Nonsense_Mutation p.R424* 0.42 TCGA-A6-5665-01 19 14164547 14164547 C A PALM3 Missense_Mutation p.S631I 0.24 tolerated(0.06) possibly_damaging(0.466) TCGA-A6-5665-01 19 1438569 1438569 G T RPS15 Intron 0.37 TCGA-A6-5665-01 19 14755079 14755079 G - EMR3 Frame_Shift_Del p.S298Vfs*26 0.25 TCGA-A6-5665-01 19 1482384 1482384 C T PCSK4 Missense_Mutation p.C596Y 0.39 deleterious(0.04) possibly_damaging(0.781) TCGA-A6-5665-01 19 15220057 15220057 C T SYDE1 Silent p.D93D 0.32 TCGA-A6-5665-01 19 15511140 15511140 A G AKAP8L Silent p.D338D 0.36 TCGA-A6-5665-01 19 15572409 15572409 G A RASAL3 Missense_Mutation p.P113L 0.46 tolerated(0.27) benign(0.009) TCGA-A6-5665-01 19 15586515 15586515 G A PGLYRP2 Silent p.N322N 0.33 TCGA-A6-5665-01 19 15587221 15587221 C T PGLYRP2 Missense_Mutation p.S87N 0.32 tolerated(0.19) benign(0.082) TCGA-A6-5665-01 19 16918475 16918475 C T NWD1 Missense_Mutation p.T1272M 0.40 deleterious(0.03) probably_damaging(0.921) TCGA-A6-5665-01 19 17330108 17330108 A - USE1 Frame_Shift_Del p.K171Sfs*7 0.36 TCGA-A6-5665-01 19 17366216 17366216 C T USHBP1 Missense_Mutation p.G557E 0.31 tolerated(0.31) benign(0.01) TCGA-A6-5665-01 19 17443832 17443832 G A ANO8 Missense_Mutation p.R165C 0.38 tolerated(0.09) probably_damaging(1) TCGA-A6-5665-01 19 17611177 17611177 C T SLC27A1 Missense_Mutation p.R433W 0.12 deleterious(0.02) probably_damaging(0.978) TCGA-A6-5665-01 19 17838753 17838753 C - MAP1S Frame_Shift_Del p.R854Gfs*156 0.32 TCGA-A6-5665-01 19 1785177 1785177 G - ATP8B3 Frame_Shift_Del p.T1172Rfs*12 0.21 TCGA-A6-5665-01 19 17984971 17984971 G A SLC5A5 Missense_Mutation p.A128T 0.30 tolerated(0.38) benign(0.055) TCGA-A6-5665-01 19 18119561 18119561 T C ARRDC2 Missense_Mutation p.F106L 0.38 deleterious(0.02) possibly_damaging(0.868) TCGA-A6-5665-01 19 18502817 18502817 A G LRRC25 Missense_Mutation p.Y300H 0.30 deleterious(0.01) benign(0.433) TCGA-A6-5665-01 19 18876263 18876263 C - CRTC1 Frame_Shift_Del p.L330Cfs*3 0.48 TCGA-A6-5665-01 19 18981216 18981217 - G GDF1 5'UTR 0.29 TCGA-A6-5665-01 19 19256495 19256495 G - MEF2B 3'Flank 0.34 TCGA-A6-5665-01 19 19613285 19613285 C A GATAD2A Missense_Mutation p.A574D 0.34 tolerated(0.27) benign(0.06) TCGA-A6-5665-01 19 19766205 19766205 A G ATP13A1 Missense_Mutation p.L485P 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 19 19823207 19823207 G A ZNF14 Nonsense_Mutation p.R295* 0.34 TCGA-A6-5665-01 19 20003707 20003707 T G ZNF253 3'UTR 0.34 TCGA-A6-5665-01 19 20828064 20828106 ATTCAACAGAAACTATTACTCTCAGACATTTCAGATCTGATGC TTCAACAGAAACTATTACTCTCAGACATTTCAGATCTGATGCAA ZNF626 Intron 0.10 TCGA-A6-5665-01 19 2109202 2109202 C T AP3D1 Missense_Mutation p.A1119T 0.11 tolerated(0.5) benign(0.005) TCGA-A6-5665-01 19 2110822 2110822 C T AP3D1 Missense_Mutation p.S1020N 0.19 tolerated(0.26) benign(0.077) TCGA-A6-5665-01 19 2129161 2129161 A G AP3D1 Missense_Mutation p.F245S 0.33 deleterious(0) probably_damaging(0.991) TCGA-A6-5665-01 19 21300131 21300131 A G ZNF714 Missense_Mutation p.I221V 0.27 deleterious(0.03) probably_damaging(0.968) TCGA-A6-5665-01 19 21301516 21301516 C T ZNF714 3'UTR 0.24 TCGA-A6-5665-01 19 2138652 2138652 G A AP3D1 Missense_Mutation p.A53V 0.46 tolerated(0.08) possibly_damaging(0.66) TCGA-A6-5665-01 19 21933731 21933731 G A ZNF100 Intron 0.33 TCGA-A6-5665-01 19 22156689 22156689 T C ZNF208 Missense_Mutation p.T383A 0.35 tolerated(0.84) benign(0.269) TCGA-A6-5665-01 19 22779093 22779093 G A CTC-457E21.3 RNA 0.25 TCGA-A6-5665-01 19 22779193 22779193 C T CTC-457E21.3 RNA 0.18 TCGA-A6-5665-01 19 281391 281391 G T PPAP2C Silent p.S309S 0.28 TCGA-A6-5665-01 19 3057710 3057710 A G AES Silent p.S119S 0.34 TCGA-A6-5665-01 19 307222 307222 A G MIER2 Missense_Mutation p.S505P 0.30 deleterious(0) probably_damaging(0.964) TCGA-A6-5665-01 19 31768568 31768568 C T TSHZ3 Missense_Mutation p.D711N 0.39 tolerated(0.22) possibly_damaging(0.496) TCGA-A6-5665-01 19 3179934 3179934 C T S1PR4 Missense_Mutation p.R382W 0.35 deleterious(0.01) possibly_damaging(0.727) TCGA-A6-5665-01 19 32873435 32873435 A G ZNF507 Missense_Mutation p.H808R 0.34 deleterious(0) possibly_damaging(0.84) TCGA-A6-5665-01 19 33698464 33698464 G A LRP3 Missense_Mutation p.A766T 0.32 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-A6-5665-01 19 34263071 34263071 G A CHST8 Silent p.P126P 0.44 TCGA-A6-5665-01 19 3547911 3547911 C T MFSD12 Missense_Mutation p.A258T 0.35 benign(0.021) TCGA-A6-5665-01 19 35556442 35556442 G T HPN Splice_Site p.X303_splice 0.44 TCGA-A6-5665-01 19 35718875 35718875 C A FAM187B Nonsense_Mutation p.G237* 0.40 TCGA-A6-5665-01 19 3574573 3574573 A G HMG20B Missense_Mutation p.T114A 0.36 tolerated(0.66) benign(0.002) TCGA-A6-5665-01 19 36044025 36044025 A G ATP4A Missense_Mutation p.W889R 0.25 deleterious(0) probably_damaging(0.96) TCGA-A6-5665-01 19 36229431 36229431 C G KMT2B Silent p.A2707A 0.32 TCGA-A6-5665-01 19 36229558 36229558 C - KMT2B 3'UTR 0.50 TCGA-A6-5665-01 19 36269476 36269477 - C ARHGAP33 Frame_Shift_Ins p.E130Rfs*27 0.34 TCGA-A6-5665-01 19 36271699 36271699 T C ARHGAP33 Silent p.G270G 0.27 TCGA-A6-5665-01 19 36275174 36275174 G A ARHGAP33 Missense_Mutation p.V508I 0.36 tolerated_low_confidence(0.07) benign(0.045) TCGA-A6-5665-01 19 36321824 36321824 A G NPHS1 Silent p.P1172P 0.32 TCGA-A6-5665-01 19 36340264 36340264 G T NPHS1 Missense_Mutation p.F238L 0.47 deleterious(0) probably_damaging(0.913) TCGA-A6-5665-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.28 TCGA-A6-5665-01 19 36435715 36435715 C T LRFN3 Missense_Mutation p.R561C 0.29 deleterious(0) probably_damaging(0.993) TCGA-A6-5665-01 19 3644148 3644148 C T PIP5K1C Missense_Mutation p.E483K 0.38 tolerated(0.28) benign(0.412) TCGA-A6-5665-01 19 3651850 3651850 G A PIP5K1C Silent p.R367R 0.30 TCGA-A6-5665-01 19 36616584 36616584 G A TBCB Missense_Mutation p.R212H 0.32 deleterious(0.04) benign(0.284) TCGA-A6-5665-01 19 37642377 37642377 A G ZNF585A 3'UTR 0.29 TCGA-A6-5665-01 19 38782692 38782692 G A SPINT2 3'UTR 0.35 TCGA-A6-5665-01 19 38876297 38876297 C T GGN Silent p.R535R 0.43 TCGA-A6-5665-01 19 39109801 39109801 C T EIF3K 5'UTR 0.31 TCGA-A6-5665-01 19 39227902 39227902 C - CAPN12 Frame_Shift_Del p.G419Afs*20 0.25 TCGA-A6-5665-01 19 39868153 39868153 A C SAMD4B Missense_Mutation p.N378T 0.39 tolerated(0.45) benign(0.005) TCGA-A6-5665-01 19 39881987 39881987 A G MED29 5'UTR 0.12 TCGA-A6-5665-01 19 39994895 39994895 C T DLL3 Silent p.D279D 0.38 TCGA-A6-5665-01 19 39998232 39998232 G A DLL3 Silent p.T549T 0.27 TCGA-A6-5665-01 19 40316612 40316612 G - DYRK1B Frame_Shift_Del p.Q545Sfs*19 0.38 TCGA-A6-5665-01 19 40317948 40317948 G A DYRK1B Nonsense_Mutation p.R358* 0.26 TCGA-A6-5665-01 19 40433520 40433520 G A FCGBP Missense_Mutation p.T250I 0.30 possibly_damaging(0.795) TCGA-A6-5665-01 19 41129927 41129927 C - LTBP4 Frame_Shift_Del p.P1325Hfs*103 0.32 TCGA-A6-5665-01 19 41271081 41271081 C - SNRPA 3'UTR 0.30 TCGA-A6-5665-01 19 41292619 41292619 G T RAB4B Missense_Mutation p.E160D 0.30 tolerated(0.25) benign(0.066) TCGA-A6-5665-01 19 41599674 41599674 A G CYP2A13 Missense_Mutation p.E324G 0.34 deleterious(0.04) possibly_damaging(0.665) TCGA-A6-5665-01 19 41743883 41743883 C T AXL Missense_Mutation p.A273V 0.31 tolerated(0.29) benign(0.016) TCGA-A6-5665-01 19 41749592 41749592 G A AXL Missense_Mutation p.R506H 0.38 deleterious(0.02) probably_damaging(0.97) TCGA-A6-5665-01 19 41860843 41860844 - A B9D2 Frame_Shift_Ins p.C97Lfs*6 0.33 TCGA-A6-5665-01 19 41895679 41895679 C A EXOSC5 Missense_Mutation p.K172N 0.07 tolerated(0.11) possibly_damaging(0.547) TCGA-A6-5665-01 19 42342336 42342336 C T LYPD4 Splice_Site p.X71_splice 0.44 TCGA-A6-5665-01 19 42392875 42392875 G A ARHGEF1 Missense_Mutation p.R70H 0.35 tolerated(0.13) benign(0.017) TCGA-A6-5665-01 19 42600343 42600343 G A POU2F2 Missense_Mutation p.P185L 0.34 deleterious(0) benign(0.037) TCGA-A6-5665-01 19 42600372 42600372 G T POU2F2 Silent p.P175P 0.29 TCGA-A6-5665-01 19 42795412 42795412 C T CIC Missense_Mutation p.T831M 0.38 probably_damaging(0.985) TCGA-A6-5665-01 19 42841338 42841338 C - MEGF8 Frame_Shift_Del p.P499Rfs*19 0.45 TCGA-A6-5665-01 19 42861727 42861727 C - MEGF8 Frame_Shift_Del p.T1603Qfs*60 0.30 TCGA-A6-5665-01 19 43225930 43225930 A - PSG3 3'UTR 0.15 TCGA-A6-5665-01 19 43259169 43259169 C T PSG8 Missense_Mutation p.R320H 0.34 tolerated(0.25) benign(0.009) TCGA-A6-5665-01 19 44241765 44241765 C T SMG9 Missense_Mutation p.D327N 0.11 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 19 44417865 44417865 G A ZNF45 Missense_Mutation p.R575C 0.39 deleterious(0.03) benign(0.028) TCGA-A6-5665-01 19 44739600 44739600 T C ZNF227 Silent p.L339L 0.46 TCGA-A6-5665-01 19 44777320 44777320 A - ZNF233 Frame_Shift_Del p.N171Ifs*6 0.23 TCGA-A6-5665-01 19 4504450 4504450 C T PLIN4 3'UTR 0.36 TCGA-A6-5665-01 19 45150554 45150554 C T PVR Silent p.L47L 0.25 TCGA-A6-5665-01 19 45209063 45209063 G A CEACAM16 Missense_Mutation p.G289R 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 19 45488545 45488545 A G CLPTM1 Missense_Mutation p.D219G 0.37 tolerated(0.17) possibly_damaging(0.561) TCGA-A6-5665-01 19 45656430 45656430 C T NKPD1 Missense_Mutation p.S422N 0.30 deleterious(0.04) benign(0.066) TCGA-A6-5665-01 19 45681413 45681413 C A TRAPPC6A Missense_Mutation p.D22Y 0.36 deleterious(0.01) possibly_damaging(0.664) TCGA-A6-5665-01 19 45851943 45851943 T C KLC3 Silent p.H273H 0.35 TCGA-A6-5665-01 19 46094697 46094697 G T GPR4 Missense_Mutation p.A143D 0.37 tolerated(0.06) possibly_damaging(0.617) TCGA-A6-5665-01 19 46124888 46124888 G A EML2 Silent p.N484N 0.35 TCGA-A6-5665-01 19 46308045 46308045 T A RSPH6A Missense_Mutation p.E373V 0.31 deleterious(0.01) probably_damaging(0.93) TCGA-A6-5665-01 19 47030212 47030212 C T PPP5D1 Missense_Mutation p.V69M 0.46 deleterious(0.01) probably_damaging(0.912) TCGA-A6-5665-01 19 47207841 47207841 T C PRKD2 Missense_Mutation p.K193E 0.28 deleterious(0.04) benign(0.393) TCGA-A6-5665-01 19 47341677 47341677 C T AP2S1 3'UTR 0.33 TCGA-A6-5665-01 19 47880443 47880443 G A DHX34 Missense_Mutation p.V896I 0.48 tolerated(0.35) possibly_damaging(0.563) TCGA-A6-5665-01 19 47986769 47986769 G A KPTN Missense_Mutation p.T100M 0.35 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.21 TCGA-A6-5665-01 19 48229328 48229328 C T EHD2 Silent p.I254I 0.32 TCGA-A6-5665-01 19 48253472 48253472 A G GLTSCR2 Silent p.S109S 0.27 TCGA-A6-5665-01 19 48657138 48657138 C T LIG1 Missense_Mutation p.E153K 0.44 tolerated(0.43) benign(0.01) TCGA-A6-5665-01 19 48833629 48833629 G - EMP3 Frame_Shift_Del p.G133Afs*? 0.39 TCGA-A6-5665-01 19 48894588 48894588 G T KDELR1 Missense_Mutation p.L10I 0.36 tolerated(0.11) benign(0.003) TCGA-A6-5665-01 19 48918135 48918135 C - GRIN2D Frame_Shift_Del p.R478Afs*15 0.33 TCGA-A6-5665-01 19 49254078 49254078 T C FUT1 Missense_Mutation p.Y154C 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-A6-5665-01 19 49671602 49671602 T C TRPM4 Silent p.T178T 0.08 TCGA-A6-5665-01 19 49686010 49686010 C T TRPM4 Missense_Mutation p.A480V 0.37 tolerated(0.25) benign(0.004) TCGA-A6-5665-01 19 49793848 49793849 - G SLC6A16 Intron 0.36 TCGA-A6-5665-01 19 49965947 49965948 - G ALDH16A1 Frame_Shift_Ins p.A347Gfs*5 0.38 TCGA-A6-5665-01 19 49967724 49967724 C T ALDH16A1 Missense_Mutation p.S461L 0.28 deleterious(0) benign(0.042) TCGA-A6-5665-01 19 49969059 49969059 A G ALDH16A1 Missense_Mutation p.R545G 0.22 deleterious(0.03) probably_damaging(0.919) TCGA-A6-5665-01 19 49969068 49969068 C T ALDH16A1 Missense_Mutation p.R548W 0.20 tolerated(0.23) benign(0.001) TCGA-A6-5665-01 19 49995060 49995060 A G RPL13A Silent p.G200G 0.75 TCGA-A6-5665-01 19 50017608 50017608 G A FCGRT Missense_Mutation p.E156K 0.37 tolerated(0.11) probably_damaging(0.941) TCGA-A6-5665-01 19 50098979 50098979 G - PRR12 Frame_Shift_Del p.Q465Rfs*5 0.30 TCGA-A6-5665-01 19 50166507 50166507 C A IRF3 Missense_Mutation p.D116Y 0.35 deleterious(0) benign(0.405) TCGA-A6-5665-01 19 50209361 50209361 G T CPT1C Missense_Mutation p.R387M 0.37 deleterious(0) probably_damaging(0.975) TCGA-A6-5665-01 19 50755952 50755952 C T MYH14 Silent p.N629N 0.46 TCGA-A6-5665-01 19 50775925 50775925 G A MYH14 Missense_Mutation p.R1135Q 0.39 tolerated(1) benign(0.004) TCGA-A6-5665-01 19 50861806 50861806 G A NAPSA 3'UTR 0.41 TCGA-A6-5665-01 19 50919053 50919054 - A POLD1 Frame_Shift_Ins p.V933Cfs*21 0.31 TCGA-A6-5665-01 19 50926214 50926214 G T SPIB Missense_Mutation p.G87W 0.34 tolerated(0.17) probably_damaging(1) TCGA-A6-5665-01 19 5132015 5132015 G A KDM4B Missense_Mutation p.E635K 0.44 possibly_damaging(0.651) TCGA-A6-5665-01 19 52477759 52477760 - T ZNF350 5'UTR 0.18 TCGA-A6-5665-01 19 52520334 52520334 T C ZNF614 Missense_Mutation p.T173A 0.32 tolerated(0.11) benign(0.004) TCGA-A6-5665-01 19 53454164 53454164 A G ZNF816 Silent p.N288N 0.32 TCGA-A6-5665-01 19 54072632 54072632 T C ZNF331 Translation_Start_Site p.M1? 0.33 deleterious(0) benign(0.227) TCGA-A6-5665-01 19 54310804 54310804 C - NLRP12 Frame_Shift_Del p.V730* 0.33 TCGA-A6-5665-01 19 54377099 54377099 G A MYADM Missense_Mutation p.A106T 0.16 tolerated(0.05) probably_damaging(0.987) TCGA-A6-5665-01 19 5455653 5455653 G T ZNRF4 Missense_Mutation p.A51S 0.21 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-A6-5665-01 19 54659537 54659537 C T LENG1 Silent p.R239R 0.40 TCGA-A6-5665-01 19 54695989 54695989 A G TSEN34 Silent p.G170G 0.27 TCGA-A6-5665-01 19 55112003 55112004 - A LILRA1 Frame_Shift_Ins p.N448Kfs*34 0.29 TCGA-A6-5665-01 19 55263952 55263952 T G KIR2DL3 Missense_Mutation p.L336R 0.33 deleterious(0) probably_damaging(0.991) TCGA-A6-5665-01 19 55451377 55451377 G A NLRP7 Silent p.C270C 0.48 TCGA-A6-5665-01 19 55672081 55672081 C - DNAAF3 Frame_Shift_Del p.R394Afs*81 0.49 TCGA-A6-5665-01 19 55738422 55738422 A G TMEM86B 3'UTR 0.39 TCGA-A6-5665-01 19 55853410 55853410 G A SUV420H2 Missense_Mutation p.V36I 0.42 tolerated(0.42) benign(0.002) TCGA-A6-5665-01 19 55967058 55967058 C A ISOC2 Missense_Mutation p.R98L 0.49 tolerated(0.71) benign(0.004) TCGA-A6-5665-01 19 56113570 56113570 G A ZNF524 Missense_Mutation p.R31H 0.10 tolerated_low_confidence(0.05) unknown(0) TCGA-A6-5665-01 19 56180468 56180468 G A U2AF2 Missense_Mutation p.G322D 0.33 deleterious(0.02) possibly_damaging(0.897) TCGA-A6-5665-01 19 56196873 56196873 C T EPN1 Missense_Mutation p.R225C 0.34 deleterious(0) unknown(0) TCGA-A6-5665-01 19 56200334 56200334 G A EPN1 Missense_Mutation p.A304T 0.31 deleterious(0) unknown(0) TCGA-A6-5665-01 19 56204053 56204053 T C EPN1 Silent p.G442G 0.32 TCGA-A6-5665-01 19 56388503 56388503 G A NLRP4 Silent p.T889T 0.31 TCGA-A6-5665-01 19 5661609 5661609 C T SAFB Missense_Mutation p.A648V 0.36 tolerated(0.12) unknown(0) TCGA-A6-5665-01 19 5680478 5680478 G A C19orf70 Missense_Mutation p.S7L 0.42 deleterious(0) possibly_damaging(0.684) TCGA-A6-5665-01 19 57175267 57175267 C T ZNF835 Missense_Mutation p.A434T 0.52 tolerated(0.85) benign(0) TCGA-A6-5665-01 19 5720731 5720731 C T CATSPERD 5'UTR 0.30 TCGA-A6-5665-01 19 57911215 57911215 A G ZNF548 Silent p.S532S 0.33 TCGA-A6-5665-01 19 58238823 58238823 C T ZNF671 Missense_Mutation p.R25H 0.41 tolerated(0.15) possibly_damaging(0.522) TCGA-A6-5665-01 19 58353163 58353163 G A ZNF587B Missense_Mutation p.R374H 0.42 deleterious(0) possibly_damaging(0.734) TCGA-A6-5665-01 19 58639920 58639920 A G ZNF329 Silent p.C317C 0.37 TCGA-A6-5665-01 19 58772317 58772317 G T ZNF544 Missense_Mutation p.E115D 0.43 tolerated(0.86) possibly_damaging(0.482) TCGA-A6-5665-01 19 58850359 58850360 GT - ZSCAN22 Frame_Shift_Del p.C382* 0.36 TCGA-A6-5665-01 19 58864226 58864226 G T A1BG Intron 0.50 TCGA-A6-5665-01 19 5917529 5917529 C T RANBP3 3'UTR 0.39 TCGA-A6-5665-01 19 6016170 6016170 T C RFX2 Missense_Mutation p.N237S 0.29 deleterious(0.02) benign(0.431) TCGA-A6-5665-01 19 619016 619016 C T POLRMT Missense_Mutation p.R1083H 0.33 tolerated(1) benign(0.002) TCGA-A6-5665-01 19 6230661 6230661 C T MLLT1 Missense_Mutation p.V114M 0.41 deleterious(0.02) probably_damaging(0.966) TCGA-A6-5665-01 19 648162 648162 G A RNF126 Missense_Mutation p.S301L 0.35 deleterious_low_confidence(0) unknown(0) TCGA-A6-5665-01 19 6496088 6496088 C - TUBB4A Frame_Shift_Del p.G141Vfs*24 0.26 TCGA-A6-5665-01 19 6694575 6694575 G - C3 Frame_Shift_Del p.S1008Rfs*8 0.33 TCGA-A6-5665-01 19 6746045 6746045 C - TRIP10 Intron 0.35 TCGA-A6-5665-01 19 7505029 7505029 C T ARHGEF18 Missense_Mutation p.A68V 0.44 tolerated_low_confidence(0.12) benign(0.035) TCGA-A6-5665-01 19 7518523 7518523 C T ARHGEF18 Missense_Mutation p.R488C 0.29 deleterious(0) benign(0.273) TCGA-A6-5665-01 19 7523541 7523541 C T ARHGEF18 Silent p.N587N 0.39 TCGA-A6-5665-01 19 7529484 7529484 A G ARHGEF18 Missense_Mutation p.R750G 0.37 tolerated(0.47) benign(0.002) TCGA-A6-5665-01 19 7606876 7606876 C A PNPLA6 Missense_Mutation p.P401H 0.24 tolerated(0.26) benign(0.009) TCGA-A6-5665-01 19 7618805 7618805 G A PNPLA6 Missense_Mutation p.A779T 0.46 tolerated(0.2) benign(0.006) TCGA-A6-5665-01 19 7830501 7830501 A G CLEC4M Intron 0.35 TCGA-A6-5665-01 19 7832436 7832436 G A CLEC4M Missense_Mutation p.R324H 0.42 tolerated(0.17) probably_damaging(0.982) TCGA-A6-5665-01 19 7977281 7977281 G A MAP2K7 Missense_Mutation p.V409I 0.37 tolerated_low_confidence(0.41) benign(0) TCGA-A6-5665-01 19 7986982 7986982 G A SNAPC2 Silent p.T145T 0.45 TCGA-A6-5665-01 19 8150344 8150344 C A FBN3 Silent p.R2330R 0.25 TCGA-A6-5665-01 19 815230 815230 C T LPPR3 Missense_Mutation p.G120D 0.40 deleterious(0) probably_damaging(0.996) TCGA-A6-5665-01 19 8161885 8161885 C T FBN3 Missense_Mutation p.D1765N 0.25 tolerated(0.31) benign(0.081) TCGA-A6-5665-01 19 8191364 8191364 G A FBN3 Missense_Mutation p.R848C 0.42 tolerated(0.05) probably_damaging(0.932) TCGA-A6-5665-01 19 9046064 9046064 G A MUC16 Missense_Mutation p.T11856I 0.31 possibly_damaging(0.765) TCGA-A6-5665-01 19 9046092 9046092 T - MUC16 Frame_Shift_Del p.T11847Qfs*15 0.30 TCGA-A6-5665-01 19 9071468 9071468 A G MUC16 Silent p.T5326T 0.33 TCGA-A6-5665-01 19 9770138 9770138 A G ZNF562 Missense_Mutation p.F11L 0.45 tolerated(0.58) benign(0.002) TCGA-A6-5665-01 1 100111754 100111754 G T PALMD 5'UTR 0.42 TCGA-A6-5665-01 1 10163152 10163152 T C UBE4B Splice_Site p.X194_splice 0.35 TCGA-A6-5665-01 1 1019741 1019741 T C C1orf159 Missense_Mutation p.Q165R 0.33 tolerated(0.19) benign(0.005) TCGA-A6-5665-01 1 103573858 103573858 A G COL11A1 5'UTR 0.27 TCGA-A6-5665-01 1 10703056 10703056 C G CASZ1 Missense_Mutation p.G1341A 0.33 tolerated_low_confidence(0.1) benign(0.015) TCGA-A6-5665-01 1 10706196 10706197 AG - CASZ1 Frame_Shift_Del p.C1229Sfs*38 0.31 TCGA-A6-5665-01 1 109358699 109358699 T C AKNAD1 3'UTR 0.36 TCGA-A6-5665-01 1 109377104 109377104 C A AKNAD1 Missense_Mutation p.D571Y 0.35 deleterious(0.01) possibly_damaging(0.808) TCGA-A6-5665-01 1 109856601 109856601 C T SORT1 3'UTR 0.34 TCGA-A6-5665-01 1 110125089 110125089 G A GNAI3 Silent p.Q164Q 0.36 TCGA-A6-5665-01 1 110215829 110215830 - C GSTM2 Intron 0.31 TCGA-A6-5665-01 1 110458298 110458298 T C CSF1 Missense_Mutation p.F69L 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 110740854 110740854 G A SLC6A17 Missense_Mutation p.G658S 0.44 deleterious(0.05) benign(0.323) TCGA-A6-5665-01 1 110923602 110923602 A G SLC16A4 Splice_Site p.X176_splice 0.31 TCGA-A6-5665-01 1 111060872 111060872 G A KCNA10 Missense_Mutation p.R180W 0.35 deleterious(0.05) probably_damaging(0.947) TCGA-A6-5665-01 1 111147106 111147106 C T KCNA2 Missense_Mutation p.R100Q 0.39 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 1 11136981 11136981 G T EXOSC10 Missense_Mutation p.A635E 0.37 tolerated(0.23) benign(0.004) TCGA-A6-5665-01 1 11249905 11249905 G A ANGPTL7 Missense_Mutation p.R90H 0.27 tolerated(0.15) benign(0.003) TCGA-A6-5665-01 1 113266635 113266635 C G FAM19A3 Missense_Mutation p.P112A 0.28 tolerated(0.08) possibly_damaging(0.485) TCGA-A6-5665-01 1 113460203 113460203 A - SLC16A1 Frame_Shift_Del p.F275Lfs*37 0.28 TCGA-A6-5665-01 1 113636075 113636075 T C LRIG2 Missense_Mutation p.I135T 0.29 deleterious(0) benign(0.126) TCGA-A6-5665-01 1 114354885 114354885 A G RSBN1 Silent p.A50A 0.42 TCGA-A6-5665-01 1 114442682 114442682 A - AP4B1 Frame_Shift_Del p.C320Afs*21 0.28 TCGA-A6-5665-01 1 115267916 115267917 - C CSDE1 Frame_Shift_Ins p.D606Gfs*6 0.22 TCGA-A6-5665-01 1 11589914 11589914 G A PTCHD2 Silent p.A1000A 0.43 TCGA-A6-5665-01 1 116948193 116948193 T C ATP1A1 3'Flank 0.34 TCGA-A6-5665-01 1 117086989 117086989 T C CD58 Missense_Mutation p.Y103C 0.35 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 11769474 11769474 T C DRAXIN Silent p.P198P 0.41 TCGA-A6-5665-01 1 118567949 118567949 G A SPAG17 Missense_Mutation p.T1274M 0.31 deleterious(0.02) benign(0.143) TCGA-A6-5665-01 1 11896064 11896064 G A CLCN6 Missense_Mutation p.V612I 0.40 tolerated(0.52) benign(0.116) TCGA-A6-5665-01 1 1257343 1257343 G A CPSF3L 5'UTR 0.29 TCGA-A6-5665-01 1 12677325 12677325 A G DHRS3 Missense_Mutation p.V10A 0.28 tolerated(0.09) benign(0.014) TCGA-A6-5665-01 1 1354790 1354790 G A ANKRD65 Missense_Mutation p.A297V 0.35 tolerated(0.06) unknown(0) TCGA-A6-5665-01 1 1361543 1361543 G - TMEM88B Frame_Shift_Del p.G14Efs*23 0.33 TCGA-A6-5665-01 1 13669039 13669039 C T PRAMEF14 Missense_Mutation p.A431T 0.34 tolerated(0.2) benign(0.003) TCGA-A6-5665-01 1 1396234 1396234 G A ATAD3C Missense_Mutation p.R306Q 0.11 deleterious(0.02) possibly_damaging(0.649) TCGA-A6-5665-01 1 144892490 144892490 C T PDE4DIP Intron 0.18 TCGA-A6-5665-01 1 144906113 144906113 T - PDE4DIP Frame_Shift_Del p.V841Lfs*4 0.28 TCGA-A6-5665-01 1 145074918 145074918 T C PDE4DIP 3'UTR 0.07 TCGA-A6-5665-01 1 145414832 145414832 C A HFE2 Silent p.P17P 0.29 TCGA-A6-5665-01 1 147597182 147597182 C A NBPF24 Missense_Mutation p.R93M 0.35 deleterious(0.01) benign(0.354) TCGA-A6-5665-01 1 149783608 149783608 T C HIST2H2BF Missense_Mutation p.T91A 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.853) TCGA-A6-5665-01 1 149885442 149885442 T C SV2A 5'UTR 0.31 TCGA-A6-5665-01 1 150484269 150484269 T C ECM1 Missense_Mutation p.C376R 0.37 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 150529491 150529491 C T ADAMTSL4 Missense_Mutation p.P609L 0.38 tolerated(0.05) possibly_damaging(0.548) TCGA-A6-5665-01 1 150970635 150970635 G T FAM63A Missense_Mutation p.L414M 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 151107772 151107772 G A SEMA6C Missense_Mutation p.R483W 0.30 deleterious(0.03) possibly_damaging(0.835) TCGA-A6-5665-01 1 151156955 151156955 G A VPS72 Missense_Mutation p.R134C 0.39 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 1 151261061 151261061 C T ZNF687 Missense_Mutation p.R725C 0.33 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 151288150 151288150 T - PI4KB Frame_Shift_Del p.R282Gfs*14 0.30 TCGA-A6-5665-01 1 151740686 151740686 C A OAZ3 Silent p.A107A 0.25 TCGA-A6-5665-01 1 152060485 152060485 A - TCHHL1 Frame_Shift_Del p.Q46Sfs*15 0.29 TCGA-A6-5665-01 1 152083844 152083844 C T TCHH Missense_Mutation p.E617K 0.37 unknown(0) TCGA-A6-5665-01 1 152331378 152331378 T C FLG2 5'UTR 0.39 TCGA-A6-5665-01 1 152382155 152382155 T C CRNN Missense_Mutation p.Q468R 0.37 deleterious(0.02) probably_damaging(0.91) TCGA-A6-5665-01 1 152760323 152760323 T C LCE1E 3'UTR 0.35 TCGA-A6-5665-01 1 153509753 153509753 G T S100A5 3'UTR 0.36 TCGA-A6-5665-01 1 153800733 153800733 G A GATAD2B Nonsense_Mutation p.R31* 0.35 TCGA-A6-5665-01 1 153906688 153906688 G - DENND4B Frame_Shift_Del p.P955Lfs*5 0.45 TCGA-A6-5665-01 1 154197588 154197588 T C UBAP2L 5'UTR 0.37 TCGA-A6-5665-01 1 154304153 154304153 C T ATP8B2 Missense_Mutation p.A179V 0.38 tolerated(0.05) possibly_damaging(0.551) TCGA-A6-5665-01 1 154544477 154544477 G A CHRNB2 Missense_Mutation p.R393H 0.32 tolerated(0.18) benign(0.005) TCGA-A6-5665-01 1 154920755 154920755 T C PBXIP1 Missense_Mutation p.E166G 0.33 tolerated(0.23) benign(0.009) TCGA-A6-5665-01 1 155018930 155018930 G A DCST1 Missense_Mutation p.R488H 0.28 deleterious(0) probably_damaging(0.961) TCGA-A6-5665-01 1 155279644 155279644 C - FDPS Frame_Shift_Del p.R23Gfs*45 0.28 TCGA-A6-5665-01 1 155330093 155330093 T C ASH1L Missense_Mutation p.Q2265R 0.38 deleterious_low_confidence(0.02) probably_damaging(0.97) TCGA-A6-5665-01 1 15615973 15615974 - C FHAD1 Frame_Shift_Ins p.P130Tfs*99 0.28 TCGA-A6-5665-01 1 156524177 156524177 C T IQGAP3 Missense_Mutation p.G433D 0.44 tolerated(0.17) benign(0.001) TCGA-A6-5665-01 1 15656049 15656049 T - FHAD1 Frame_Shift_Del p.S247Lfs*12 0.31 TCGA-A6-5665-01 1 156705553 156705554 - C RRNAD1 Frame_Shift_Ins p.Q388Pfs*53 0.31 TCGA-A6-5665-01 1 156705648 156705648 C T RRNAD1 Missense_Mutation p.P418L 0.35 deleterious(0) probably_damaging(0.978) TCGA-A6-5665-01 1 156707100 156707101 AT - MRPL24 3'UTR 0.21 TCGA-A6-5665-01 1 156752111 156752111 C A PRCC Missense_Mutation p.T169N 0.35 tolerated(0.67) benign(0.004) TCGA-A6-5665-01 1 156893853 156893853 C T LRRC71 Silent p.F91F 0.29 TCGA-A6-5665-01 1 156924692 156924692 G - ARHGEF11 Frame_Shift_Del p.P597Lfs*9 0.17 TCGA-A6-5665-01 1 157062215 157062215 G T ETV3L 3'UTR 0.23 TCGA-A6-5665-01 1 157660299 157660299 G A FCRL3 Missense_Mutation p.T479I 0.37 tolerated(0.09) benign(0.358) TCGA-A6-5665-01 1 158815713 158815713 G T MNDA Missense_Mutation p.A303S 0.35 deleterious(0.03) probably_damaging(1) TCGA-A6-5665-01 1 159912939 159912939 G A IGSF9 Nonsense_Mutation p.R21* 0.28 TCGA-A6-5665-01 1 160106415 160106415 C T ATP1A2 Silent p.N873N 0.40 TCGA-A6-5665-01 1 16062992 16062993 - C SLC25A34 Frame_Shift_Ins p.A7Sfs*197 0.37 TCGA-A6-5665-01 1 160793374 160793374 A G LY9 Missense_Mutation p.N540D 0.39 tolerated(0.1) benign(0.021) TCGA-A6-5665-01 1 161166436 161166436 G A ADAMTS4 Missense_Mutation p.R290C 0.36 deleterious(0) probably_damaging(0.967) TCGA-A6-5665-01 1 161953713 161953713 G A OLFML2B Missense_Mutation p.R669W 0.36 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 16262460 16262465 CCCCCA - SPEN In_Frame_Del p.T3246_P3247del 0.26 TCGA-A6-5665-01 1 16269106 16269106 A G ZBTB17 Silent p.S652S 0.38 TCGA-A6-5665-01 1 162741860 162741860 G A DDR2 Silent p.G517G 0.38 TCGA-A6-5665-01 1 162829401 162829401 C A C1orf110 Missense_Mutation p.K12N 0.35 deleterious(0) benign(0.121) TCGA-A6-5665-01 1 162829410 162829410 T G C1orf110 Missense_Mutation p.Q9H 0.38 deleterious(0.01) possibly_damaging(0.693) TCGA-A6-5665-01 1 1635510 1635510 A G CDK11A Missense_Mutation p.Y588H 0.20 deleterious(0) unknown(0) TCGA-A6-5665-01 1 164532540 164532540 A - PBX1 Frame_Shift_Del p.T88Qfs*3 0.33 TCGA-A6-5665-01 1 165859539 165859539 T C UCK2 Silent p.R66R 0.36 TCGA-A6-5665-01 1 166890503 166890503 C T ILDR2 Missense_Mutation p.R442H 0.50 tolerated(0.05) benign(0.01) TCGA-A6-5665-01 1 167778997 167778998 - T ADCY10 Frame_Shift_Ins p.I1584Nfs*21 0.26 TCGA-A6-5665-01 1 167874286 167874287 - G ADCY10 Frame_Shift_Ins p.E32Rfs*9 0.26 TCGA-A6-5665-01 1 168683508 168683508 A G DPT Missense_Mutation p.W128R 0.26 deleterious(0) possibly_damaging(0.81) TCGA-A6-5665-01 1 16945008 16945008 G A RP5-1182A14.5 3'Flank 0.21 TCGA-A6-5665-01 1 171765659 171765659 G A METTL13 Silent p.G621G 0.06 TCGA-A6-5665-01 1 17257857 17257857 G A CROCC Silent p.R307R 0.17 TCGA-A6-5665-01 1 173155594 173155594 C A TNFSF4 3'UTR 0.42 TCGA-A6-5665-01 1 173556847 173556847 G A SLC9C2 Silent p.G160G 0.40 TCGA-A6-5665-01 1 173854937 173854938 - G ZBTB37 Frame_Shift_Ins p.I398Dfs*70 0.31 TCGA-A6-5665-01 1 173873127 173873127 A G SERPINC1 Missense_Mutation p.V432A 0.29 tolerated(0.23) benign(0.178) TCGA-A6-5665-01 1 17409108 17409108 C A PADI2 Missense_Mutation p.G364C 0.25 deleterious(0.02) benign(0.033) TCGA-A6-5665-01 1 174769577 174769577 C T RABGAP1L Intron 0.34 TCGA-A6-5665-01 1 17570753 17570753 G A PADI1 3'UTR 0.31 TCGA-A6-5665-01 1 17634693 17634693 G A PADI4 5'UTR 0.24 TCGA-A6-5665-01 1 17735381 17735381 A G RCC2 3'UTR 0.40 TCGA-A6-5665-01 1 17736524 17736524 C T RCC2 Silent p.K470K 0.33 TCGA-A6-5665-01 1 178885503 178885504 - A RALGPS2 3'UTR 0.37 TCGA-A6-5665-01 1 179033504 179033504 C T FAM20B Missense_Mutation p.R271C 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-A6-5665-01 1 179322998 179322998 G - SOAT1 3'UTR 0.21 TCGA-A6-5665-01 1 179782209 179782209 A G FAM163A Splice_Site 0.32 TCGA-A6-5665-01 1 181726162 181726163 - C CACNA1E Frame_Shift_Ins p.F1412Lfs*21 0.36 TCGA-A6-5665-01 1 181741217 181741217 G A CACNA1E Silent p.E1663E 0.39 TCGA-A6-5665-01 1 183617654 183617654 G A APOBEC4 Missense_Mutation p.T88I 0.35 tolerated(0.2) benign(0.426) TCGA-A6-5665-01 1 18554484 18554484 C T IGSF21 Missense_Mutation p.R55W 0.47 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 1 186957678 186957678 G T PLA2G4A 3'UTR 0.42 TCGA-A6-5665-01 1 19235079 19235079 C T IFFO2 Silent p.A510A 0.27 TCGA-A6-5665-01 1 192779369 192779369 A - RGS2 Frame_Shift_Del p.S64Afs*25 0.29 TCGA-A6-5665-01 1 193104522 193104522 A G CDC73 Silent p.S103S 0.12 TCGA-A6-5665-01 1 196706028 196706028 C T CFH Missense_Mutation p.R830W 0.30 deleterious(0.03) benign(0.003) TCGA-A6-5665-01 1 20005867 20005867 G A HTR6 3'UTR 0.36 TCGA-A6-5665-01 1 200619573 200619573 T C DDX59 Missense_Mutation p.K432E 0.35 deleterious(0) possibly_damaging(0.883) TCGA-A6-5665-01 1 201182067 201182067 G A IGFN1 Silent p.A2682A 0.41 TCGA-A6-5665-01 1 201195238 201195238 C - IGFN1 Frame_Shift_Del p.R3593Gfs*8 0.31 TCGA-A6-5665-01 1 201294927 201294927 C T PKP1 Silent p.D710D 0.28 TCGA-A6-5665-01 1 201777570 201777570 C T NAV1 Silent p.H1290H 0.42 TCGA-A6-5665-01 1 201868805 201868805 T C LMOD1 Missense_Mutation p.T446A 0.35 probably_damaging(0.955) TCGA-A6-5665-01 1 20230876 20230876 T C OTUD3 Silent p.N241N 0.30 TCGA-A6-5665-01 1 20246820 20246820 C T PLA2G2E Missense_Mutation p.G137R 0.37 deleterious(0) probably_damaging(0.98) TCGA-A6-5665-01 1 202842631 202842631 G A RP11-480I12.7 RNA 0.54 TCGA-A6-5665-01 1 203677138 203677138 G A ATP2B4 Missense_Mutation p.R488H 0.40 tolerated(0.23) benign(0.008) TCGA-A6-5665-01 1 203786079 203786079 T C ZC3H11A 5'UTR 0.30 TCGA-A6-5665-01 1 204957970 204957970 C T NFASC Intron 0.31 TCGA-A6-5665-01 1 205033479 205033479 G A CNTN2 Missense_Mutation p.V424M 0.31 tolerated(0.36) benign(0.18) TCGA-A6-5665-01 1 205052614 205052614 A - TMEM81 3'UTR 0.26 TCGA-A6-5665-01 1 205138677 205138677 A G DSTYK Missense_Mutation p.L313P 0.42 deleterious(0) probably_damaging(0.954) TCGA-A6-5665-01 1 205744233 205744233 A - RAB7L1 Intron 0.43 TCGA-A6-5665-01 1 207644349 207644349 G A CR2 Silent p.A470A 0.36 TCGA-A6-5665-01 1 208227852 208227852 C T PLXNA2 Missense_Mutation p.G924R 0.39 tolerated(0.75) benign(0.406) TCGA-A6-5665-01 1 210857113 210857113 C - KCNH1 Frame_Shift_Del p.G827Afs*48 0.36 TCGA-A6-5665-01 1 2116414 2116414 A G PRKCZ Missense_Mutation p.N582S 0.30 tolerated(0.08) benign(0.37) TCGA-A6-5665-01 1 213147210 213147210 T G VASH2 Intron 0.36 TCGA-A6-5665-01 1 214556727 214556727 G T PTPN14 Missense_Mutation p.P824H 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-A6-5665-01 1 214557902 214557902 G A PTPN14 Silent p.S432S 0.35 TCGA-A6-5665-01 1 217793313 217793313 A G GPATCH2 Silent p.S195S 0.28 TCGA-A6-5665-01 1 220088929 220088929 G A SLC30A10 Silent p.Y440Y 0.41 TCGA-A6-5665-01 1 220170554 220170554 T A EPRS Missense_Mutation p.K771I 0.32 deleterious(0) possibly_damaging(0.795) TCGA-A6-5665-01 1 220191817 220191817 C T EPRS Missense_Mutation p.D490N 0.35 deleterious(0.05) possibly_damaging(0.856) TCGA-A6-5665-01 1 220287689 220287689 T G IARS2 Missense_Mutation p.S505A 0.32 tolerated(0.26) benign(0.032) TCGA-A6-5665-01 1 220321185 220321185 A G IARS2 3'UTR 0.38 TCGA-A6-5665-01 1 220702124 220702124 C T MARK1 5'UTR 0.42 TCGA-A6-5665-01 1 220824028 220824028 C T MARK1 Nonsense_Mutation p.R513* 0.26 TCGA-A6-5665-01 1 22084234 22084234 A G USP48 Silent p.G59G 0.30 TCGA-A6-5665-01 1 22201453 22201453 G A HSPG2 Silent p.T1115T 0.10 TCGA-A6-5665-01 1 223285330 223285330 C A TLR5 Silent p.L348L 0.34 TCGA-A6-5665-01 1 223934868 223934868 G A CAPN2 Splice_Site p.X243_splice 0.36 TCGA-A6-5665-01 1 225155453 225155453 T - DNAH14 Intron 0.27 TCGA-A6-5665-01 1 225340456 225340456 A G DNAH14 Silent p.A769A 0.27 TCGA-A6-5665-01 1 225586904 225586904 C T LBR 3'Flank 0.39 TCGA-A6-5665-01 1 226589959 226589959 T C PARP1 Missense_Mutation p.D81G 0.23 deleterious(0.01) probably_damaging(1) TCGA-A6-5665-01 1 228295456 228295456 A G MRPL55 Silent p.A83A 0.32 TCGA-A6-5665-01 1 22835101 22835102 - CT ZBTB40 Frame_Shift_Ins p.A529Lfs*40 0.29 TCGA-A6-5665-01 1 228461623 228461623 C T OBSCN Missense_Mutation p.R2139W 0.40 probably_damaging(0.997) TCGA-A6-5665-01 1 228481239 228481239 G A OBSCN Missense_Mutation p.G4114S 0.44 possibly_damaging(0.832) TCGA-A6-5665-01 1 229462504 229462504 G A CCSAP Missense_Mutation p.A206V 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5665-01 1 229567547 229567547 C - ACTA1 Frame_Shift_Del p.G304Afs*24 0.28 TCGA-A6-5665-01 1 229577696 229577696 A - NUP133 Frame_Shift_Del p.F1142Lfs*3 0.27 TCGA-A6-5665-01 1 23233411 23233411 C T EPHB2 Silent p.T700T 0.35 TCGA-A6-5665-01 1 233362972 233362972 C T PCNXL2 Missense_Mutation p.R835Q 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 2334639 2334643 TAAAG - RER1 3'UTR 0.33 TCGA-A6-5665-01 1 233518219 233518219 A T MLK4 Missense_Mutation p.Q958L 0.29 tolerated(0.31) benign(0.004) TCGA-A6-5665-01 1 233518253 233518253 A T MLK4 Silent p.A969A 0.35 TCGA-A6-5665-01 1 233518254 233518254 C T MLK4 Nonsense_Mutation p.Q970* 0.35 TCGA-A6-5665-01 1 23417973 23417973 G A LUZP1 Nonsense_Mutation p.R928* 0.34 TCGA-A6-5665-01 1 236142297 236142297 T C NID1 Missense_Mutation p.Q1207R 0.33 tolerated(0.34) benign(0.006) TCGA-A6-5665-01 1 236703901 236703901 A G LGALS8 Missense_Mutation p.H128R 0.31 deleterious(0.01) benign(0.222) TCGA-A6-5665-01 1 236717925 236717925 T C HEATR1 Silent p.E2017E 0.35 TCGA-A6-5665-01 1 237947292 237947292 A G RYR2 Missense_Mutation p.I4094V 0.37 probably_damaging(0.945) TCGA-A6-5665-01 1 240370358 240370358 C T FMN2 Missense_Mutation p.T749M 0.30 unknown(0) TCGA-A6-5665-01 1 242383293 242383293 T G PLD5 Silent p.G244G 0.39 TCGA-A6-5665-01 1 243328959 243328959 T - CEP170 Frame_Shift_Del p.N768Mfs*49 0.21 TCGA-A6-5665-01 1 2435612 2435613 - C PLCH2 3'UTR 0.31 TCGA-A6-5665-01 1 247319879 247319909 TACATTTATAGGGCTTTTCTCCAGTATGAGT ACATTTATAGGGCTTTTCTCCAGTATGAG ZNF124 Frame_Shift_Del p.T277Lfs*39 0.16 TCGA-A6-5665-01 1 247588084 247588084 C A NLRP3 Missense_Mutation p.L447I 0.36 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 1 248813459 248813459 A C OR2T27 Missense_Mutation p.S243A 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-A6-5665-01 1 25688796 25688796 T C RHCE 3'UTR 0.30 TCGA-A6-5665-01 1 25944746 25944746 G A MAN1C1 Missense_Mutation p.R153H 0.47 tolerated(0.54) benign(0.002) TCGA-A6-5665-01 1 26104704 26104704 G A MAN1C1 Missense_Mutation p.G456R 0.40 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 1 26300997 26300997 A C PAFAH2 Missense_Mutation p.H301Q 0.38 tolerated(0.61) possibly_damaging(0.485) TCGA-A6-5665-01 1 26644515 26644515 C T CD52 Missense_Mutation p.R3C 0.35 tolerated_low_confidence(0.06) possibly_damaging(0.835) TCGA-A6-5665-01 1 27088681 27088682 - C ARID1A Frame_Shift_Ins p.Q766Pfs*51 0.34 TCGA-A6-5665-01 1 27190218 27190218 T A SFN Missense_Mutation p.L172Q 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A6-5665-01 1 27676005 27676005 C T SYTL1 Intron 0.29 TCGA-A6-5665-01 1 27695922 27695922 G A FCN3 Silent p.D235D 0.31 TCGA-A6-5665-01 1 28315081 28315081 A G EYA3 Missense_Mutation p.F502S 0.35 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 28362120 28362120 A G EYA3 Missense_Mutation p.L99P 0.36 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 28599237 28599237 C A SESN2 Missense_Mutation p.P228H 0.36 tolerated(0.54) benign(0.421) TCGA-A6-5665-01 1 28800457 28800458 - C PHACTR4 Frame_Shift_Ins p.H417Pfs*5 0.28 TCGA-A6-5665-01 1 29070056 29070056 G A YTHDF2 Missense_Mutation p.R425H 0.34 deleterious(0.03) possibly_damaging(0.874) TCGA-A6-5665-01 1 29095545 29095546 - T YTHDF2 3'UTR 0.27 TCGA-A6-5665-01 1 32201936 32201936 G A BAI2 Silent p.Y1062Y 0.34 TCGA-A6-5665-01 1 32673550 32673550 A G IQCC Missense_Mutation p.H503R 0.27 tolerated_low_confidence(0.07) benign(0.015) TCGA-A6-5665-01 1 32713143 32713143 C T FAM167B Missense_Mutation p.P41S 0.35 deleterious(0) probably_damaging(0.996) TCGA-A6-5665-01 1 32828227 32828227 G T TSSK3 5'UTR 0.41 TCGA-A6-5665-01 1 33478687 33478687 T - AK2 3'UTR 0.25 TCGA-A6-5665-01 1 33745911 33745911 T A ZNF362 Missense_Mutation p.I179N 0.32 tolerated(0.58) benign(0.001) TCGA-A6-5665-01 1 34330240 34330240 A G HMGB4 Missense_Mutation p.R150G 0.31 deleterious(0) probably_damaging(0.985) TCGA-A6-5665-01 1 34667700 34667700 C T C1orf94 Missense_Mutation p.T429M 0.45 tolerated(0.08) benign(0.231) TCGA-A6-5665-01 1 35334506 35334506 G A DLGAP3 Missense_Mutation p.R729C 0.35 deleterious(0) possibly_damaging(0.828) TCGA-A6-5665-01 1 35365852 35365852 C - DLGAP3 Frame_Shift_Del p.G377Vfs*91 0.47 TCGA-A6-5665-01 1 35370146 35370146 G - DLGAP3 Frame_Shift_Del p.P280Lfs*20 0.30 TCGA-A6-5665-01 1 35370734 35370734 C A DLGAP3 Missense_Mutation p.G84V 0.29 tolerated(0.44) benign(0.027) TCGA-A6-5665-01 1 35650166 35650166 G A SFPQ Missense_Mutation p.A672V 0.39 tolerated(0.11) benign(0.001) TCGA-A6-5665-01 1 35658409 35658409 T G SFPQ Missense_Mutation p.Q81P 0.44 tolerated_low_confidence(0.28) unknown(0) TCGA-A6-5665-01 1 36773789 36773789 C T SH3D21 Silent p.D206D 0.35 TCGA-A6-5665-01 1 38027225 38027225 C T DNALI1 Silent p.D177D 0.38 TCGA-A6-5665-01 1 39900125 39900125 A G MACF1 Missense_Mutation p.S3807G 0.36 probably_damaging(0.96) TCGA-A6-5665-01 1 39991342 39991342 G A BMP8A Missense_Mutation p.A361T 0.44 tolerated(0.66) benign(0.053) TCGA-A6-5665-01 1 40433537 40433537 C T MFSD2A Missense_Mutation p.A399V 0.38 tolerated(1) benign(0.001) TCGA-A6-5665-01 1 40961730 40961730 A - ZFP69 Frame_Shift_Del 0.21 TCGA-A6-5665-01 1 43778007 43778007 G A TIE1 Nonsense_Mutation p.W554* 0.19 TCGA-A6-5665-01 1 43805050 43805050 A G MPL Missense_Mutation p.Y167C 0.26 deleterious(0.03) possibly_damaging(0.838) TCGA-A6-5665-01 1 43907974 43907974 G A SZT2 Missense_Mutation p.D2580N 0.29 tolerated(0.5) benign(0.399) TCGA-A6-5665-01 1 43914072 43914072 G - SZT2 Frame_Shift_Del p.R3241Afs*11 0.30 TCGA-A6-5665-01 1 44386218 44386218 G - ST3GAL3 Frame_Shift_Del 0.24 TCGA-A6-5665-01 1 44684911 44684911 C G DMAP1 Missense_Mutation p.P302A 0.46 tolerated(0.42) benign(0.017) TCGA-A6-5665-01 1 44820571 44820571 T C ERI3 Missense_Mutation p.H43R 0.38 tolerated_low_confidence(0.13) benign(0.003) TCGA-A6-5665-01 1 44878204 44878204 C A RNF220 Nonsense_Mutation p.C145* 0.37 TCGA-A6-5665-01 1 45226123 45226123 C T KIF2C Silent p.G513G 0.42 TCGA-A6-5665-01 1 45271630 45271632 CCT - TCTEX1D4 3'UTR 0.31 TCGA-A6-5665-01 1 45974816 45974816 C T MMACHC Missense_Mutation p.P260S 0.31 tolerated_low_confidence(0.06) benign(0.029) TCGA-A6-5665-01 1 46083153 46083153 A T NASP Missense_Mutation p.S726C 0.36 deleterious(0.03) benign(0.031) TCGA-A6-5665-01 1 46083154 46083154 G C NASP Missense_Mutation p.S726T 0.36 tolerated(0.08) benign(0.041) TCGA-A6-5665-01 1 47183874 47183875 - C EFCAB14 5'UTR 0.41 TCGA-A6-5665-01 1 47883025 47883025 C G FOXE3 3'UTR 0.32 TCGA-A6-5665-01 1 4829985 4829985 T C AJAP1 Missense_Mutation p.L301P 0.38 deleterious(0) possibly_damaging(0.883) TCGA-A6-5665-01 1 50907042 50907042 C T FAF1 3'UTR 0.36 TCGA-A6-5665-01 1 51737184 51737184 T C RNF11 3'UTR 0.31 TCGA-A6-5665-01 1 52490213 52490213 G A TXNDC12 Silent p.D108D 0.39 TCGA-A6-5665-01 1 52901073 52901073 A G ZCCHC11 Silent p.G1409G 0.35 TCGA-A6-5665-01 1 53580368 53580368 G T SLC1A7 Intron 0.44 TCGA-A6-5665-01 1 53675781 53675781 T C CPT2 Silent p.Y145Y 0.35 TCGA-A6-5665-01 1 54708961 54708961 G A SSBP3 Silent p.S221S 0.34 TCGA-A6-5665-01 1 55248117 55248117 G A TTC22 Missense_Mutation p.R352W 0.35 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 1 5927935 5927935 C A NPHP4 Missense_Mutation p.G1113C 0.53 deleterious(0.02) probably_damaging(0.998) TCGA-A6-5665-01 1 6194862 6194863 - C CHD5 Frame_Shift_Ins p.G977Rfs*63 0.28 TCGA-A6-5665-01 1 63018404 63018404 T G DOCK7 Missense_Mutation p.K922T 0.35 deleterious(0.04) possibly_damaging(0.452) TCGA-A6-5665-01 1 63097004 63097004 G A DOCK7 Missense_Mutation p.P397S 0.35 deleterious(0) probably_damaging(0.99) TCGA-A6-5665-01 1 65099889 65099890 - A CACHD1 Frame_Shift_Ins p.A269Gfs*11 0.36 TCGA-A6-5665-01 1 65129472 65129472 C T CACHD1 Silent p.T631T 0.31 TCGA-A6-5665-01 1 6521765 6521765 A G TNFRSF25 Missense_Mutation p.M337T 0.47 tolerated(0.54) benign(0.006) TCGA-A6-5665-01 1 65309805 65309805 G A JAK1 Missense_Mutation p.T782M 0.33 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 1 65775496 65775496 A T DNAJC6 Missense_Mutation p.D23V 0.08 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-A6-5665-01 1 6885198 6885199 - A CAMTA1 Frame_Shift_Ins p.L57Afs*3 0.29 TCGA-A6-5665-01 1 71513326 71513326 C T PTGER3 5'UTR 0.44 TCGA-A6-5665-01 1 74671349 74671349 A C FPGT Missense_Mutation p.T540P 0.33 tolerated(0.09) benign(0.106) TCGA-A6-5665-01 1 74808658 74808658 C - FPGT-TNNI3K Frame_Shift_Del p.L388Yfs*25 0.29 TCGA-A6-5665-01 1 75038621 75038621 C T C1orf173 Missense_Mutation p.A925T 0.35 tolerated(0.14) benign(0.158) TCGA-A6-5665-01 1 76877965 76877965 G T ST6GALNAC3 Missense_Mutation p.R162S 0.33 probably_damaging(0.953) TCGA-A6-5665-01 1 7724943 7724943 A G CAMTA1 Missense_Mutation p.D779G 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-A6-5665-01 1 78408292 78408292 G A NEXN Silent p.T602T 0.30 TCGA-A6-5665-01 1 7845053 7845053 A G PER3 Missense_Mutation p.D39G 0.40 tolerated(0.24) benign(0.018) TCGA-A6-5665-01 1 7845596 7845596 G A PER3 Missense_Mutation p.S75N 0.34 deleterious(0.02) possibly_damaging(0.483) TCGA-A6-5665-01 1 84335525 84335526 - AT TTLL7 3'UTR 0.38 TCGA-A6-5665-01 1 85733513 85733513 A - BCL10 Frame_Shift_Del p.S167Lfs*6 0.30 TCGA-A6-5665-01 1 8927294 8927294 T C ENO1 Missense_Mutation p.N109S 0.22 deleterious_low_confidence(0) benign(0.087) TCGA-A6-5665-01 1 90398905 90398905 G A LRRC8D Missense_Mutation p.R93Q 0.27 tolerated(0.72) benign(0) TCGA-A6-5665-01 1 92149259 92149259 G A TGFBR3 3'UTR 0.23 TCGA-A6-5665-01 1 92648077 92648077 G A KIAA1107 Missense_Mutation p.V1175I 0.36 tolerated(0.73) benign(0.009) TCGA-A6-5665-01 1 935143 935143 G A HES4 Missense_Mutation p.R71W 0.38 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 1 93599280 93599280 A - MTF2 Frame_Shift_Del p.G397Efs*6 0.31 TCGA-A6-5665-01 1 97279057 97279080 TGTTTTTGTTTTTTTGGGGTTTCT GTTTTTGTTTTTTTGGGGTTTC PTBP2 3'UTR 0.13 TCGA-A6-5665-01 1 977503 977503 C T AGRN Nonsense_Mutation p.Q449* 0.39 TCGA-A6-5665-01 1 98058892 98058892 A G DPYD Missense_Mutation p.V337A 0.26 deleterious(0) probably_damaging(0.971) TCGA-A6-5665-01 1 989174 989174 G A AGRN Missense_Mutation p.R1898H 0.31 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 1 99764655 99764655 A G LPPR4 Silent p.G201G 0.32 TCGA-A6-5665-01 1 99764734 99764734 A G LPPR4 Missense_Mutation p.I228V 0.32 tolerated(0.22) benign(0.018) TCGA-A6-5665-01 20 1552668 1552668 G A SIRPB1 Missense_Mutation p.P150L 0.40 deleterious(0) possibly_damaging(0.836) TCGA-A6-5665-01 20 17474634 17474634 A G BFSP1 3'UTR 0.39 TCGA-A6-5665-01 20 17616199 17616199 C T RRBP1 Silent p.V383V 0.37 TCGA-A6-5665-01 20 20505116 20505116 G T RALGAPA2 Silent p.P1278P 0.44 TCGA-A6-5665-01 20 210034 210034 A G DEFB129 Silent p.K58K 0.43 TCGA-A6-5665-01 20 21143724 21143725 - A RP4-777D9.2 Intron 0.32 TCGA-A6-5665-01 20 23017256 23017256 G A SSTR4 Missense_Mutation p.R379H 0.44 tolerated_low_confidence(0.34) benign(0) TCGA-A6-5665-01 20 2397994 2397994 G A TGM6 Missense_Mutation p.D485N 0.43 tolerated(0.28) benign(0.011) TCGA-A6-5665-01 20 25239910 25239910 G A PYGB Missense_Mutation p.R94H 0.38 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 20 25261651 25261651 G A PYGB Missense_Mutation p.D436N 0.43 tolerated(0.27) benign(0.02) TCGA-A6-5665-01 20 2637863 2637863 A G NOP56 Missense_Mutation p.E473G 0.26 deleterious(0.01) benign(0.403) TCGA-A6-5665-01 20 3027292 3027292 A G MRPS26 Missense_Mutation p.Q131R 0.31 tolerated(0.41) benign(0.013) TCGA-A6-5665-01 20 3052368 3052368 C G OXT Missense_Mutation p.Q23E 0.41 deleterious(0.01) possibly_damaging(0.88) TCGA-A6-5665-01 20 31023045 31023046 - C ASXL1 Frame_Shift_Ins p.S846Qfs*5 0.28 TCGA-A6-5665-01 20 3102357 3102357 C - UBOX5 Frame_Shift_Del p.V310* 0.21 TCGA-A6-5665-01 20 32000508 32000508 G A SNTA1 Missense_Mutation p.A261V 0.38 deleterious(0.01) benign(0.065) TCGA-A6-5665-01 20 33575583 33575583 G T MYH7B Missense_Mutation p.G470W 0.41 probably_damaging(0.998) TCGA-A6-5665-01 20 33584954 33584956 AGA - MYH7B In_Frame_Del p.K1156del 0.44 TCGA-A6-5665-01 20 33592270 33592270 C T TRPC4AP Silent p.T680T 0.35 TCGA-A6-5665-01 20 34025402 34025402 C T GDF5 Missense_Mutation p.G103S 0.36 tolerated_low_confidence(0.31) benign(0.003) TCGA-A6-5665-01 20 34055199 34055199 A G CEP250 Missense_Mutation p.T224A 0.29 benign(0.397) TCGA-A6-5665-01 20 34065923 34065923 T C CEP250 Silent p.S697S 0.29 TCGA-A6-5665-01 20 34078574 34078574 G A CEP250 Missense_Mutation p.A900T 0.39 benign(0.16) TCGA-A6-5665-01 20 34078602 34078602 G A CEP250 Missense_Mutation p.R909Q 0.30 benign(0.044) TCGA-A6-5665-01 20 34091175 34091175 C T CEP250 Silent p.L1660L 0.49 TCGA-A6-5665-01 20 35422658 35422658 A G SOGA1 Missense_Mutation p.I1276T 0.23 tolerated(0.3) benign(0.053) TCGA-A6-5665-01 20 35882726 35882727 - CT GHRH Frame_Shift_Ins p.S65Rfs*16 0.28 TCGA-A6-5665-01 20 36560109 36560109 G A VSTM2L Missense_Mutation p.R65H 0.53 deleterious(0.02) possibly_damaging(0.548) TCGA-A6-5665-01 20 37005370 37005370 G T LBP 3'UTR 0.48 TCGA-A6-5665-01 20 37580943 37580943 C - FAM83D Frame_Shift_Del p.H545Tfs*6 0.27 TCGA-A6-5665-01 20 40877350 40877350 G A PTPRT Silent p.G763G 0.42 TCGA-A6-5665-01 20 42164483 42164483 G T L3MBTL1 Missense_Mutation p.R589I 0.36 tolerated(0.12) benign(0.058) TCGA-A6-5665-01 20 42935567 42935567 C T FITM2 Missense_Mutation p.A163T 0.39 tolerated(0.26) benign(0.046) TCGA-A6-5665-01 20 42965958 42965958 G A R3HDML Missense_Mutation p.R54Q 0.31 tolerated(0.32) benign(0.025) TCGA-A6-5665-01 20 43108916 43108916 G A TTPAL Missense_Mutation p.D93N 0.29 tolerated(0.17) probably_damaging(0.997) TCGA-A6-5665-01 20 43610535 43610535 A G STK4 Missense_Mutation p.Y104C 0.35 deleterious(0) probably_damaging(0.988) TCGA-A6-5665-01 20 44437804 44437804 C T DNTTIP1 Missense_Mutation p.R259W 0.28 deleterious(0.01) probably_damaging(0.968) TCGA-A6-5665-01 20 44577521 44577521 T C ZNF335 3'UTR 0.24 TCGA-A6-5665-01 20 44641900 44641900 G A MMP9 Missense_Mutation p.R446H 0.34 tolerated(0.09) possibly_damaging(0.63) TCGA-A6-5665-01 20 44669085 44669085 A G SLC12A5 Missense_Mutation p.N252S 0.42 deleterious(0.02) possibly_damaging(0.728) TCGA-A6-5665-01 20 44806765 44806765 T - CDH22 Frame_Shift_Del p.I579Sfs*4 0.34 TCGA-A6-5665-01 20 45130930 45130930 C T ZNF334 Missense_Mutation p.E350K 0.30 tolerated(0.29) benign(0.029) TCGA-A6-5665-01 20 47580376 47580376 A G ARFGEF2 Missense_Mutation p.D283G 0.34 tolerated(0.16) benign(0.027) TCGA-A6-5665-01 20 47585689 47585689 G A ARFGEF2 Silent p.S355S 0.39 TCGA-A6-5665-01 20 47592612 47592612 C T ARFGEF2 Missense_Mutation p.R612W 0.38 tolerated(0.11) possibly_damaging(0.586) TCGA-A6-5665-01 20 4764641 4764641 G A RASSF2 3'UTR 0.55 TCGA-A6-5665-01 20 47989636 47989636 T A KCNB1 Missense_Mutation p.T821S 0.39 tolerated_low_confidence(0.72) benign(0.001) TCGA-A6-5665-01 20 48600837 48600837 A G SNAI1 Missense_Mutation p.K187E 0.40 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 20 49366260 49366260 C T PARD6B Silent p.N118N 0.42 TCGA-A6-5665-01 20 49509275 49509275 T - ADNP Frame_Shift_Del p.K659Sfs*17 0.29 TCGA-A6-5665-01 20 49626090 49626090 G A KCNG1 Intron 0.45 TCGA-A6-5665-01 20 52198079 52198079 A G ZNF217 Silent p.D429D 0.28 TCGA-A6-5665-01 20 52198655 52198655 C T ZNF217 Silent p.V237V 0.34 TCGA-A6-5665-01 20 54978828 54978828 C - CSTF1 3'UTR 0.40 TCGA-A6-5665-01 20 55111309 55111310 TG - FAM209B Frame_Shift_Del p.V112Ifs*8 0.23 TCGA-A6-5665-01 20 56099187 56099187 T - CTCFL Frame_Shift_Del p.G26Afs*2 0.26 TCGA-A6-5665-01 20 57268929 57268929 C T NPEPL1 Missense_Mutation p.T96M 0.29 deleterious(0.05) benign(0.301) TCGA-A6-5665-01 20 57599377 57599377 A G TUBB1 Missense_Mutation p.T299A 0.29 deleterious_low_confidence(0.02) benign(0.001) TCGA-A6-5665-01 20 57829768 57829768 C T ZNF831 Silent p.D1668D 0.30 TCGA-A6-5665-01 20 60884164 60884164 T C LAMA5 3'UTR 0.33 TCGA-A6-5665-01 20 60913194 60913194 C T LAMA5 Missense_Mutation p.S590N 0.43 probably_damaging(0.966) TCGA-A6-5665-01 20 61981331 61981331 C T CHRNA4 Missense_Mutation p.V478M 0.46 tolerated_low_confidence(0.16) benign(0.015) TCGA-A6-5665-01 20 62126388 62126388 C T EEF1A2 Missense_Mutation p.G131R 0.39 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-A6-5665-01 20 62195618 62195618 G A HELZ2 Silent p.R1519R 0.41 TCGA-A6-5665-01 20 62198989 62198989 G - HELZ2 Intron 0.38 TCGA-A6-5665-01 20 62340057 62340057 A T ZGPAT Missense_Mutation p.D42V 0.44 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 20 62698347 62698349 TCA - TCEA2 In_Frame_Del p.I73del 0.38 TCGA-A6-5665-01 20 62701893 62701893 G A TCEA2 Missense_Mutation p.A242T 0.38 deleterious(0.03) possibly_damaging(0.803) TCGA-A6-5665-01 20 741891 741891 C T SLC52A3 Intron 0.17 TCGA-A6-5665-01 21 31045422 31045422 G A GRIK1 Missense_Mutation p.R203C 0.60 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 21 31588279 31588279 G A CLDN8 5'UTR 0.50 TCGA-A6-5665-01 21 34799292 34799292 T - IFNGR2 Frame_Shift_Del p.C174Vfs*29 0.36 TCGA-A6-5665-01 21 35255977 35255977 T C ITSN1 Splice_Site p.X1559_splice 0.59 TCGA-A6-5665-01 21 37445113 37445113 T - CBR1 Frame_Shift_Del p.L257Cfs*38 0.33 TCGA-A6-5665-01 21 38117103 38117103 C T SIM2 Silent p.S414S 0.44 TCGA-A6-5665-01 21 40559106 40559106 C T BRWD1 Missense_Mutation p.R2270Q 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-A6-5665-01 21 44448918 44448918 T G PKNOX1 Missense_Mutation p.F345V 0.55 deleterious(0) probably_damaging(0.968) TCGA-A6-5665-01 21 45390599 45390599 G A AGPAT3 Silent p.A192A 0.62 TCGA-A6-5665-01 21 45534104 45534104 C T PWP2 Missense_Mutation p.H91Y 0.09 deleterious(0.01) possibly_damaging(0.904) TCGA-A6-5665-01 21 45648905 45648905 G A ICOSLG 3'UTR 0.51 TCGA-A6-5665-01 21 45786735 45786736 - G TRPM2 Frame_Shift_Ins p.A177Gfs*92 0.46 TCGA-A6-5665-01 21 46047173 46047173 C - KRTAP10-9 Frame_Shift_Del p.C31Afs*13 0.62 TCGA-A6-5665-01 21 46330234 46330234 C T ITGB2 Missense_Mutation p.E38K 0.48 tolerated(0.3) benign(0.017) TCGA-A6-5665-01 21 46876560 46876560 G A COL18A1 Intron 0.67 TCGA-A6-5665-01 22 17662749 17662749 T C CECR1 Missense_Mutation p.D468G 0.35 deleterious(0.01) possibly_damaging(0.742) TCGA-A6-5665-01 22 18644566 18644566 G A USP18 Silent p.V88V 0.31 TCGA-A6-5665-01 22 19747160 19747160 G A TBX1 5'UTR 0.33 TCGA-A6-5665-01 22 19839332 19839332 C A C22orf29 Missense_Mutation p.Q151H 0.39 tolerated(0.2) benign(0.081) TCGA-A6-5665-01 22 19967343 19967343 C T ARVCF Missense_Mutation p.R440Q 0.38 deleterious(0) probably_damaging(0.96) TCGA-A6-5665-01 22 20920880 20920880 C T MED15 Missense_Mutation p.P273S 0.33 tolerated_low_confidence(0.58) unknown(0) TCGA-A6-5665-01 22 21350343 21350343 G A LZTR1 Missense_Mutation p.E721K 0.31 tolerated(0.46) benign(0.039) TCGA-A6-5665-01 22 21799659 21799659 C - HIC2 Frame_Shift_Del p.R161Afs*113 0.25 TCGA-A6-5665-01 22 21799865 21799865 G - HIC2 Frame_Shift_Del p.G229Afs*45 0.39 TCGA-A6-5665-01 22 22049872 22049872 C G PPIL2 Intron 0.31 TCGA-A6-5665-01 22 22869527 22869527 G - ZNF280A Frame_Shift_Del p.P143Qfs*6 0.62 TCGA-A6-5665-01 22 23077447 23077447 G A IGLV2-18 Missense_Mutation p.R75Q 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.678) TCGA-A6-5665-01 22 23917203 23917203 A G IGLL1 Silent p.H91H 0.34 TCGA-A6-5665-01 22 25566820 25566820 A G KIAA1671 Missense_Mutation p.T1522A 0.43 tolerated(0.32) benign(0.001) TCGA-A6-5665-01 22 27012255 27012255 G A CRYBB1 Missense_Mutation p.S10L 0.40 tolerated_low_confidence(0.27) benign(0.32) TCGA-A6-5665-01 22 28378613 28378613 C T TTC28 Missense_Mutation p.A2348T 0.38 tolerated_low_confidence(0.14) benign(0.008) TCGA-A6-5665-01 22 28389393 28389393 G A TTC28 Silent p.T1786T 0.46 TCGA-A6-5665-01 22 28503396 28503396 C T TTC28 Missense_Mutation p.A813T 0.36 tolerated(0.15) benign(0.252) TCGA-A6-5665-01 22 29837650 29837650 G A RFPL1 Missense_Mutation p.V165M 0.40 tolerated(0.2) benign(0.025) TCGA-A6-5665-01 22 30864853 30864853 A G SEC14L3 Intron 0.11 TCGA-A6-5665-01 22 31363743 31363743 C T MORC2 5'UTR 0.27 TCGA-A6-5665-01 22 31485922 31485922 C - SMTN Frame_Shift_Del p.S239Afs*118 0.26 TCGA-A6-5665-01 22 31487369 31487369 G - SMTN Frame_Shift_Del p.G455Afs*3 0.35 TCGA-A6-5665-01 22 31524190 31524190 C - INPP5J Intron 0.26 TCGA-A6-5665-01 22 31534710 31534710 T C PLA2G3 Missense_Mutation p.N197S 0.31 tolerated(0.07) benign(0.119) TCGA-A6-5665-01 22 31536282 31536282 C - PLA2G3 Frame_Shift_Del p.G20Afs*14 0.38 TCGA-A6-5665-01 22 32589332 32589332 C - RFPL2 Intron 0.38 TCGA-A6-5665-01 22 36678737 36678737 C T MYH9 Missense_Mutation p.A1954T 0.37 benign(0.017) TCGA-A6-5665-01 22 36684951 36684951 T A MYH9 Missense_Mutation p.E1531V 0.33 probably_damaging(0.984) TCGA-A6-5665-01 22 36710269 36710269 T C MYH9 Missense_Mutation p.Y492C 0.32 probably_damaging(0.996) TCGA-A6-5665-01 22 36745106 36745106 A G MYH9 Missense_Mutation p.V59A 0.37 benign(0.001) TCGA-A6-5665-01 22 36894103 36894103 G A FOXRED2 Silent p.R439R 0.28 TCGA-A6-5665-01 22 37260141 37260141 C T NCF4 Silent p.I29I 0.37 TCGA-A6-5665-01 22 37900249 37900249 G - CARD10 Frame_Shift_Del p.S527Vfs*31 0.41 TCGA-A6-5665-01 22 38121925 38121925 G A TRIOBP Missense_Mutation p.R1121Q 0.43 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-A6-5665-01 22 38318139 38318139 C T MICALL1 Nonsense_Mutation p.Q244* 0.35 TCGA-A6-5665-01 22 38355378 38355379 - C POLR2F Frame_Shift_Ins p.S41Lfs*76 0.27 TCGA-A6-5665-01 22 38611613 38611615 AGA - MAFF 3'UTR 0.43 TCGA-A6-5665-01 22 40055777 40055777 T C CACNA1I Missense_Mutation p.F842L 0.28 deleterious(0) benign(0.006) TCGA-A6-5665-01 22 40080469 40080469 G A CACNA1I Missense_Mutation p.R1998Q 0.27 tolerated(0.12) benign(0.238) TCGA-A6-5665-01 22 40573969 40573970 - GA TNRC6B 5'UTR 0.31 TCGA-A6-5665-01 22 40704529 40704529 C T TNRC6B Silent p.G1378G 0.37 TCGA-A6-5665-01 22 40805082 40805083 - G SGSM3 Intron 0.30 TCGA-A6-5665-01 22 40815006 40815006 A G MKL1 Missense_Mutation p.M479T 0.42 tolerated(0.13) possibly_damaging(0.769) TCGA-A6-5665-01 22 40816929 40816930 - GCT MKL1 In_Frame_Ins p.Q267dup 0.17 TCGA-A6-5665-01 22 41791968 41791968 G A TEF 3'UTR 0.28 TCGA-A6-5665-01 22 41832246 41832246 T - TOB2 3'UTR 0.40 TCGA-A6-5665-01 22 42070995 42070995 G A NHP2L1 Missense_Mutation p.S110L 0.39 deleterious(0.03) probably_damaging(0.963) TCGA-A6-5665-01 22 42114120 42114120 A C MEI1 Missense_Mutation p.E192A 0.30 deleterious(0) probably_damaging(0.987) TCGA-A6-5665-01 22 42336166 42336166 A G CENPM Intron 0.29 TCGA-A6-5665-01 22 42456395 42456395 T C NAGA Missense_Mutation p.D375G 0.28 tolerated(0.35) benign(0.001) TCGA-A6-5665-01 22 42462718 42462718 G - NAGA Frame_Shift_Del p.P198Qfs*3 0.42 TCGA-A6-5665-01 22 42522865 42522865 G A CYP2D6 Missense_Mutation p.P435S 0.36 deleterious(0) probably_damaging(0.95) TCGA-A6-5665-01 22 42914547 42976757 22:42914547-42976757 - SERHL2 large deletion 0.21 TCGA-A6-5665-01 22 43576809 43576809 G A TTLL12 Missense_Mutation p.A162V 0.09 tolerated(0.51) benign(0.001) TCGA-A6-5665-01 22 45075520 45075520 C T PRR5 5'UTR 0.33 TCGA-A6-5665-01 22 45822020 45822020 C T RIBC2 Missense_Mutation p.R285C 0.46 deleterious(0.01) benign(0.124) TCGA-A6-5665-01 22 46505217 46505217 C T FLJ27365 Missense_Mutation p.P74S 0.28 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-A6-5665-01 22 47082845 47082845 G A CERK 3'UTR 0.33 TCGA-A6-5665-01 22 50355246 50355246 T G PIM3 Missense_Mutation p.F135V 0.43 tolerated(0.05) possibly_damaging(0.793) TCGA-A6-5665-01 22 50656389 50656389 A G TUBGCP6 Missense_Mutation p.S1776P 0.31 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 22 50685354 50685354 T C HDAC10 Silent p.A488A 0.32 TCGA-A6-5665-01 22 50714394 50714394 T C PLXNB2 Splice_Site p.X1780_splice 0.34 TCGA-A6-5665-01 22 50900006 50900006 C T SBF1 Missense_Mutation p.V929I 0.33 tolerated(0.74) benign(0.005) TCGA-A6-5665-01 22 50900047 50900047 C - SBF1 Frame_Shift_Del p.G915Afs*47 0.35 TCGA-A6-5665-01 22 50900384 50900384 A T SBF1 Missense_Mutation p.M854K 0.35 tolerated(0.1) probably_damaging(0.997) TCGA-A6-5665-01 2 10263864 10263864 T C RRM2 Missense_Mutation p.V167A 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-5665-01 2 105473386 105473386 C T POU3F3 Missense_Mutation p.T473M 0.48 tolerated_low_confidence(0.18) possibly_damaging(0.774) TCGA-A6-5665-01 2 109383889 109383889 T C RANBP2 Silent p.D2298D 0.17 TCGA-A6-5665-01 2 111408208 111408208 G A BUB1 Silent p.A706A 0.30 TCGA-A6-5665-01 2 11733220 11733220 G A GREB1 Missense_Mutation p.S555N 0.50 tolerated(0.49) benign(0.001) TCGA-A6-5665-01 2 118758425 118758425 T A CCDC93 Missense_Mutation p.D112V 0.30 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 2 120918482 120918482 C T EPB41L5 Missense_Mutation p.P607S 0.28 tolerated_low_confidence(0.27) benign(0.001) TCGA-A6-5665-01 2 122220120 122220120 T C CLASP1 Silent p.V309V 0.40 TCGA-A6-5665-01 2 124999783 124999783 G A CNTNAP5 Missense_Mutation p.G65D 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 2 125547619 125547619 G A CNTNAP5 Missense_Mutation p.G964S 0.41 tolerated(0.08) benign(0.265) TCGA-A6-5665-01 2 125672772 125672772 T C CNTNAP5 3'UTR 0.39 TCGA-A6-5665-01 2 128038081 128038081 T C ERCC3 Missense_Mutation p.E490G 0.33 deleterious(0) probably_damaging(0.93) TCGA-A6-5665-01 2 128393454 128393454 G A MYO7B Missense_Mutation p.R1967H 0.16 deleterious(0.04) probably_damaging(1) TCGA-A6-5665-01 2 130912005 130912005 G A SMPD4 Nonsense_Mutation p.R541* 0.39 TCGA-A6-5665-01 2 131356221 131356221 C A CFC1 Nonsense_Mutation p.G81* 0.18 TCGA-A6-5665-01 2 132277231 132277231 C T AC093838.4 RNA 0.29 TCGA-A6-5665-01 2 132919093 132919093 T C ANKRD30BL Silent p.T62T 0.38 TCGA-A6-5665-01 2 133430849 133430849 G A NCKAP5 3'UTR 0.31 TCGA-A6-5665-01 2 136396516 136396516 C T R3HDM1 Missense_Mutation p.T348I 0.36 deleterious(0.03) probably_damaging(0.954) TCGA-A6-5665-01 2 138738891 138738891 G A HNMT Intron 0.34 TCGA-A6-5665-01 2 141093405 141093405 A G LRP1B Silent p.C3965C 0.37 TCGA-A6-5665-01 2 1418193 1418193 G A TPO Missense_Mutation p.A5T 0.37 tolerated(0.37) benign(0.007) TCGA-A6-5665-01 2 14775222 14775222 T C FAM84A 3'UTR 0.26 TCGA-A6-5665-01 2 148653983 148653983 C T ACVR2A Missense_Mutation p.R57W 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-A6-5665-01 2 149247277 149247277 T C MBD5 Missense_Mutation p.F1126S 0.39 deleterious_low_confidence(0) unknown(0) TCGA-A6-5665-01 2 152279499 152279500 - A RIF1 Frame_Shift_Ins p.N245Kfs*2 0.32 TCGA-A6-5665-01 2 152424672 152424672 C A NEB Missense_Mutation p.W5919C 0.41 probably_damaging(1) TCGA-A6-5665-01 2 152528901 152528901 G T NEB Silent p.V1427V 0.35 TCGA-A6-5665-01 2 153575540 153575540 T C ARL6IP6 Splice_Site p.X134_splice 0.35 TCGA-A6-5665-01 2 158412687 158412687 T C ACVR1C Silent p.P154P 0.38 TCGA-A6-5665-01 2 160075843 160075843 T C TANC1 Missense_Mutation p.L1158S 0.34 deleterious(0.05) possibly_damaging(0.741) TCGA-A6-5665-01 2 160806288 160806288 C T PLA2R1 Splice_Site p.X1181_splice 0.41 TCGA-A6-5665-01 2 161138817 161138817 T G RBMS1 Intron 0.38 TCGA-A6-5665-01 2 163044680 163044680 T C FAP Missense_Mutation p.R605G 0.32 deleterious(0) benign(0.442) TCGA-A6-5665-01 2 163695055 163695056 - C KCNH7 5'UTR 0.18 TCGA-A6-5665-01 2 165754960 165754960 C T SLC38A11 Missense_Mutation p.S403N 0.33 deleterious_low_confidence(0) benign(0.309) TCGA-A6-5665-01 2 165986557 165986557 C T SCN3A Missense_Mutation p.V939M 0.32 deleterious(0) possibly_damaging(0.849) TCGA-A6-5665-01 2 166535949 166535949 C T CSRNP3 Nonsense_Mutation p.R482* 0.37 TCGA-A6-5665-01 2 167056308 167056308 A T SCN9A Missense_Mutation p.L1603H 0.32 deleterious(0) probably_damaging(0.996) TCGA-A6-5665-01 2 167313490 167313490 C T SCN7A Missense_Mutation p.A394T 0.38 tolerated(0.47) benign(0.035) TCGA-A6-5665-01 2 168100867 168100867 T C XIRP2 Missense_Mutation p.Y989H 0.37 probably_damaging(1) TCGA-A6-5665-01 2 170031819 170031819 C T LRP2 Missense_Mutation p.R3551H 0.32 possibly_damaging(0.868) TCGA-A6-5665-01 2 172337805 172337805 T - DCAF17 3'UTR 0.28 TCGA-A6-5665-01 2 172641978 172641978 C T SLC25A12 Missense_Mutation p.A615T 0.25 tolerated(0.65) benign(0.002) TCGA-A6-5665-01 2 172966336 172966336 C T DLX2 Missense_Mutation p.G147R 0.33 deleterious(0) probably_damaging(0.927) TCGA-A6-5665-01 2 175427227 175427227 A G WIPF1 3'UTR 0.37 TCGA-A6-5665-01 2 175622346 175622346 T - CHRNA1 Frame_Shift_Del p.I123Ffs*67 0.32 TCGA-A6-5665-01 2 175677103 175677103 C T CHN1 Missense_Mutation p.V274M 0.37 deleterious(0) benign(0.074) TCGA-A6-5665-01 2 179400188 179400188 G A TTN Silent p.G33718G 0.28 TCGA-A6-5665-01 2 179449076 179449076 G T TTN Silent p.I21734I 0.34 TCGA-A6-5665-01 2 179457898 179457898 A G TTN Splice_Site p.X19679_splice 0.37 TCGA-A6-5665-01 2 179469990 179469990 G A TTN Nonsense_Mutation p.R17972* 0.47 TCGA-A6-5665-01 2 179615048 179615048 T - TTN Intron 0.22 TCGA-A6-5665-01 2 179622383 179622383 C T TTN Missense_Mutation p.A3522T 0.39 TCGA-A6-5665-01 2 179638060 179638060 C T TTN Missense_Mutation p.C2544Y 0.27 TCGA-A6-5665-01 2 180308130 180308130 G A ZNF385B Silent p.L421L 0.35 TCGA-A6-5665-01 2 182542519 182542519 A G NEUROD1 Nonstop_Mutation p.*357Qext*69 0.28 TCGA-A6-5665-01 2 182787055 182787055 G T SSFA2 Silent p.G1197G 0.32 TCGA-A6-5665-01 2 186672729 186672729 A G FSIP2 Silent p.V6321V 0.32 TCGA-A6-5665-01 2 186673013 186673013 A C FSIP2 Missense_Mutation p.D6416A 0.39 probably_damaging(0.999) TCGA-A6-5665-01 2 189858998 189858998 A T COL3A1 Silent p.G411G 0.28 TCGA-A6-5665-01 2 191236088 191236088 T C INPP1 Missense_Mutation p.L387P 0.42 tolerated(0.15) benign(0.347) TCGA-A6-5665-01 2 192548527 192548528 - G NABP1 Frame_Shift_Ins 0.23 TCGA-A6-5665-01 2 196771657 196771657 G A DNAH7 Missense_Mutation p.A1394V 0.36 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 2 197183958 197183958 G A HECW2 Silent p.G552G 0.35 TCGA-A6-5665-01 2 197530302 197530302 A G CCDC150 Silent p.Q219Q 0.35 TCGA-A6-5665-01 2 198570761 198570761 A G MARS2 Missense_Mutation p.Y211C 0.29 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 2 198950849 198950849 C T PLCL1 Missense_Mutation p.R870W 0.34 deleterious(0) probably_damaging(0.974) TCGA-A6-5665-01 2 201284068 201284068 G A SPATS2L Silent p.P98P 0.10 TCGA-A6-5665-01 2 201478639 201478639 A G AOX1 Missense_Mutation p.S521G 0.28 deleterious(0.01) possibly_damaging(0.9) TCGA-A6-5665-01 2 201717962 201717962 T G CLK1 3'UTR 0.31 TCGA-A6-5665-01 2 201785861 201785861 A T ORC2 Missense_Mutation p.D383E 0.45 tolerated(0.06) benign(0.061) TCGA-A6-5665-01 2 20205786 20205786 A G MATN3 Missense_Mutation p.M170T 0.33 deleterious(0.02) probably_damaging(0.953) TCGA-A6-5665-01 2 203378487 203378487 T A BMPR2 Nonsense_Mutation p.L155* 0.34 TCGA-A6-5665-01 2 203383610 203383610 A - BMPR2 Frame_Shift_Del p.V231Cfs*21 0.29 TCGA-A6-5665-01 2 203419995 203419995 G A BMPR2 Missense_Mutation p.R536H 0.30 tolerated(0.12) possibly_damaging(0.875) TCGA-A6-5665-01 2 204078258 204078258 A G NBEAL1 Missense_Mutation p.N2622S 0.32 tolerated(0.86) benign(0) TCGA-A6-5665-01 2 205830048 205830048 T C PARD3B Splice_Site p.X132_splice 0.05 TCGA-A6-5665-01 2 205983706 205983706 T G PARD3B Missense_Mutation p.F248V 0.36 deleterious(0) probably_damaging(0.975) TCGA-A6-5665-01 2 20648022 20648022 G A RHOB 3'UTR 0.34 TCGA-A6-5665-01 2 207018369 207018369 C A NDUFS1 Missense_Mutation p.G26C 0.42 deleterious(0.03) benign(0.443) TCGA-A6-5665-01 2 207171088 207171088 A - ZDBF2 Frame_Shift_Del p.K613Nfs*34 0.26 TCGA-A6-5665-01 2 207631900 207631900 G T FASTKD2 Missense_Mutation p.E161D 0.30 tolerated(0.07) benign(0.046) TCGA-A6-5665-01 2 207988762 207988763 - AG KLF7 Frame_Shift_Ins p.A157Lfs*7 0.23 TCGA-A6-5665-01 2 209010606 209010606 G A CRYGB Silent p.R48R 0.26 TCGA-A6-5665-01 2 209200108 209200108 G A PIKFYVE Silent p.V1407V 0.38 TCGA-A6-5665-01 2 210561667 210561667 A - MAP2 Frame_Shift_Del p.T1474Qfs*14 0.21 TCGA-A6-5665-01 2 211515144 211515144 G T CPS1 Missense_Mutation p.E1160D 0.38 tolerated(0.14) possibly_damaging(0.858) TCGA-A6-5665-01 2 212248737 212248737 T - ERBB4 Frame_Shift_Del p.N1177Mfs*27 0.30 TCGA-A6-5665-01 2 21225621 21225621 C T APOB Missense_Mutation p.G4225R 0.31 possibly_damaging(0.456) TCGA-A6-5665-01 2 21230724 21230724 C A APOB Missense_Mutation p.G3006C 0.33 probably_damaging(0.988) TCGA-A6-5665-01 2 212615425 212615425 T G ERBB4 Silent p.G187G 0.42 TCGA-A6-5665-01 2 215278998 215278998 A T VWC2L Missense_Mutation p.E27D 0.41 tolerated(0.09) probably_damaging(0.969) TCGA-A6-5665-01 2 216226036 216226036 C T FN1 3'UTR 0.53 TCGA-A6-5665-01 2 216960884 216960884 C T TMEM169 Silent p.P66P 0.32 TCGA-A6-5665-01 2 217148452 217148452 C A MARCH4 Missense_Mutation p.G173W 0.28 deleterious(0) probably_damaging(0.989) TCGA-A6-5665-01 2 218682804 218682804 G T TNS1 Silent p.G1313G 0.25 TCGA-A6-5665-01 2 219000517 219000517 A G CXCR2 Missense_Mutation p.I331M 0.38 tolerated(0.25) benign(0.06) TCGA-A6-5665-01 2 219188038 219188038 C T PNKD Intron 0.38 TCGA-A6-5665-01 2 219209709 219209709 C T PNKD 3'UTR 0.44 TCGA-A6-5665-01 2 219339421 219339421 T C USP37 Missense_Mutation p.D744G 0.35 tolerated(0.1) probably_damaging(0.938) TCGA-A6-5665-01 2 219507196 219507196 C T ZNF142 Missense_Mutation p.R1348H 0.38 deleterious(0.01) possibly_damaging(0.522) TCGA-A6-5665-01 2 219508084 219508084 C - ZNF142 Frame_Shift_Del p.G1052Dfs*20 0.35 TCGA-A6-5665-01 2 219557313 219557313 G A STK36 Silent p.P641P 0.36 TCGA-A6-5665-01 2 220116323 220116325 CTC - TUBA4A In_Frame_Del p.E113del 0.28 TCGA-A6-5665-01 2 220283306 220283306 G T DES Missense_Mutation p.G41V 0.41 tolerated(0.41) unknown(0) TCGA-A6-5665-01 2 220371452 220371452 A G GMPPA Missense_Mutation p.I399V 0.36 tolerated(1) benign(0.009) TCGA-A6-5665-01 2 220404814 220404814 G A CHPF Missense_Mutation p.A540V 0.35 tolerated(0.08) benign(0.017) TCGA-A6-5665-01 2 220498620 220498620 G - SLC4A3 Frame_Shift_Del p.G522Efs*9 0.33 TCGA-A6-5665-01 2 225244658 225244658 G T FAM124B Missense_Mutation p.L334M 0.40 tolerated(0.1) probably_damaging(0.955) TCGA-A6-5665-01 2 228131147 228131147 C T COL4A3 Missense_Mutation p.R444C 0.35 benign(0.201) TCGA-A6-5665-01 2 228563686 228563686 G A SLC19A3 Silent p.L249L 0.38 TCGA-A6-5665-01 2 233350699 233350699 A G ECEL1 Missense_Mutation p.V222A 0.21 tolerated(0.72) benign(0.001) TCGA-A6-5665-01 2 233407736 233407736 C - CHRNG Frame_Shift_Del p.C252Vfs*58 0.31 TCGA-A6-5665-01 2 233659630 233659630 A T GIGYF2 Missense_Mutation p.E506D 0.30 probably_damaging(0.993) TCGA-A6-5665-01 2 233785159 233785159 C T NGEF Silent p.E221E 0.36 TCGA-A6-5665-01 2 234365952 234365952 G - DGKD Frame_Shift_Del p.G855Vfs*48 0.22 TCGA-A6-5665-01 2 234526660 234526660 C T UGT1A8 Nonsense_Mutation p.R103* 0.31 TCGA-A6-5665-01 2 238280557 238280557 G A COL6A3 Missense_Mutation p.T1368M 0.39 possibly_damaging(0.658) TCGA-A6-5665-01 2 238283363 238283363 G A COL6A3 Missense_Mutation p.A1124V 0.44 benign(0.343) TCGA-A6-5665-01 2 238668801 238668801 C T LRRFIP1 Missense_Mutation p.T281I 0.30 deleterious(0) probably_damaging(0.968) TCGA-A6-5665-01 2 239053628 239053628 A G KLHL30 Silent p.T331T 0.13 TCGA-A6-5665-01 2 241496642 241496642 C T ANKMY1 5'UTR 0.43 TCGA-A6-5665-01 2 24261284 24261284 A T C2orf44 Missense_Mutation p.C361S 0.29 tolerated(0.09) benign(0.048) TCGA-A6-5665-01 2 242648658 242648658 C T ING5 Missense_Mutation p.A46V 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-A6-5665-01 2 24980947 24980947 G T NCOA1 Missense_Mutation p.Q1329H 0.37 tolerated(0.2) probably_damaging(0.99) TCGA-A6-5665-01 2 25360284 25360284 G A EFR3B Silent p.A545A 0.33 TCGA-A6-5665-01 2 25964839 25964839 A C ASXL2 3'UTR 0.36 TCGA-A6-5665-01 2 26410397 26410397 T - GAREML Frame_Shift_Del p.S634Pfs*140 0.21 TCGA-A6-5665-01 2 26693574 26693574 C T OTOF Missense_Mutation p.E1304K 0.40 tolerated(1) benign(0.002) TCGA-A6-5665-01 2 27164843 27164843 G A DPYSL5 Missense_Mutation p.R372H 0.36 deleterious(0.04) possibly_damaging(0.897) TCGA-A6-5665-01 2 272415 272415 T C ACP1 Intron 0.40 TCGA-A6-5665-01 2 27293252 27293252 C T AGBL5 3'UTR 0.40 TCGA-A6-5665-01 2 27360161 27360161 C T C2orf53 Missense_Mutation p.R346Q 0.36 tolerated(0.51) benign(0.002) TCGA-A6-5665-01 2 27460641 27460641 A - CAD Frame_Shift_Del p.N1541Mfs*15 0.31 TCGA-A6-5665-01 2 27601882 27601882 A G ZNF513 Missense_Mutation p.L84P 0.25 tolerated(0.1) possibly_damaging(0.766) TCGA-A6-5665-01 2 27804259 27804259 G A C2orf16 Missense_Mutation p.R1607H 0.38 tolerated(0.41) unknown(0) TCGA-A6-5665-01 2 28464197 28464197 A G BRE Missense_Mutation p.Y263C 0.36 tolerated(0.15) possibly_damaging(0.613) TCGA-A6-5665-01 2 28854909 28854909 A G PLB1 Missense_Mutation p.I1302V 0.29 tolerated(0.63) benign(0.013) TCGA-A6-5665-01 2 31609297 31609297 A G XDH Missense_Mutation p.V259A 0.27 deleterious(0.02) benign(0.046) TCGA-A6-5665-01 2 33810164 33810164 G A FAM98A Silent p.G412G 0.44 TCGA-A6-5665-01 2 3691502 3691502 G A COLEC11 Missense_Mutation p.G218S 0.33 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 2 37304051 37304051 T C HEATR5B Intron 0.36 TCGA-A6-5665-01 2 37483806 37483806 T A PRKD3 Missense_Mutation p.E804D 0.38 tolerated(0.67) benign(0.029) TCGA-A6-5665-01 2 38301778 38301779 - G CYP1B1 Frame_Shift_Ins p.N252Qfs*75 0.28 TCGA-A6-5665-01 2 42720549 42720549 C T KCNG3 Silent p.P31P 0.38 TCGA-A6-5665-01 2 42991088 42991089 - C OXER1 Frame_Shift_Ins p.S78Vfs*61 0.30 TCGA-A6-5665-01 2 44428905 44428907 ACA - PPM1B In_Frame_Del p.Q190del 0.29 TCGA-A6-5665-01 2 44539749 44539749 C T SLC3A1 Silent p.L453L 0.30 TCGA-A6-5665-01 2 55189708 55189708 A - EML6 Frame_Shift_Del p.N1675Mfs*7 0.27 TCGA-A6-5665-01 2 55530260 55530261 - A CCDC88A Frame_Shift_Ins p.L1471Ffs*8 0.29 TCGA-A6-5665-01 2 61021894 61021895 - A PAPOLG Frame_Shift_Ins p.R682Kfs*18 0.25 TCGA-A6-5665-01 2 64327530 64327530 A G PELI1 Splice_Site p.X101_splice 0.37 TCGA-A6-5665-01 2 64863794 64863794 C T SERTAD2 Missense_Mutation p.R71Q 0.34 tolerated(0.25) possibly_damaging(0.887) TCGA-A6-5665-01 2 65309700 65309700 A C CEP68 Missense_Mutation p.K712T 0.32 deleterious(0) possibly_damaging(0.795) TCGA-A6-5665-01 2 69409702 69409702 G A ANTXR1 Silent p.P421P 0.34 TCGA-A6-5665-01 2 69746146 69746146 C T AAK1 Silent p.P479P 0.37 TCGA-A6-5665-01 2 70106321 70106321 A G GMCL1 3'UTR 0.25 TCGA-A6-5665-01 2 70443882 70443882 T C TIA1 Intron 0.37 TCGA-A6-5665-01 2 70457960 70457960 A - TIA1 Frame_Shift_Del p.F50Lfs*14 0.31 TCGA-A6-5665-01 2 71576670 71576673 AAAG - ZNF638 Frame_Shift_Del p.E197Hfs*11 0.35 TCGA-A6-5665-01 2 71788982 71788982 G A DYSF Missense_Mutation p.A773T 0.31 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 2 73449919 73449919 G T SMYD5 Missense_Mutation p.A227S 0.39 tolerated(0.07) probably_damaging(0.909) TCGA-A6-5665-01 2 73496006 73496006 C T FBXO41 Silent p.A251A 0.43 TCGA-A6-5665-01 2 73519905 73519905 G A EGR4 Silent p.G150G 0.25 TCGA-A6-5665-01 2 74454133 74454133 A G SLC4A5 Missense_Mutation p.V1030A 0.36 deleterious(0.02) benign(0.297) TCGA-A6-5665-01 2 74590132 74590132 C T DCTN1 Missense_Mutation p.R1173H 0.39 tolerated(0.18) benign(0.001) TCGA-A6-5665-01 2 75099500 75099500 T C HK2 Missense_Mutation p.L150P 0.36 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 2 75879785 75879785 T C MRPL19 Splice_Site p.X159_splice 0.28 TCGA-A6-5665-01 2 80874794 80874794 T G CTNNA2 Missense_Mutation p.S839A 0.28 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 2 88071761 88071762 - CT RGPD2 Frame_Shift_Ins p.S1721Rfs*7 0.26 TCGA-A6-5665-01 2 88125220 88125220 C T RGPD2 Missense_Mutation p.R10Q 0.39 deleterious(0.01) possibly_damaging(0.785) TCGA-A6-5665-01 2 88327684 88327684 T C KRCC1 Silent p.E133E 0.32 TCGA-A6-5665-01 2 88751645 88751645 C T FOXI3 RNA 0.47 TCGA-A6-5665-01 2 95815728 95815728 T C ZNF514 Missense_Mutation p.N168D 0.36 tolerated(0.07) benign(0.045) TCGA-A6-5665-01 2 96071404 96071404 G T FAHD2A Missense_Mutation p.R33L 0.38 tolerated(0.47) benign(0.001) TCGA-A6-5665-01 2 96858840 96858840 T - STARD7 Frame_Shift_Del p.N240Tfs*3 0.23 TCGA-A6-5665-01 2 97009954 97009954 A G NCAPH Missense_Mutation p.D236G 0.42 deleterious(0.03) benign(0.013) TCGA-A6-5665-01 2 97353653 97353653 G A FER1L5 RNA 0.37 TCGA-A6-5665-01 2 97373103 97373103 C T LMAN2L Missense_Mutation p.A324T 0.34 tolerated(0.18) benign(0.172) TCGA-A6-5665-01 2 97399303 97399304 - C LMAN2L Frame_Shift_Ins p.L154Afs*11 0.27 TCGA-A6-5665-01 2 97526805 97526805 C T SEMA4C Missense_Mutation p.R687H 0.35 tolerated(0.32) benign(0.023) TCGA-A6-5665-01 2 97866080 97866080 G A ANKRD36 Missense_Mutation p.R922Q 0.22 tolerated_low_confidence(1) benign(0.238) TCGA-A6-5665-01 2 99226441 99226441 G A UNC50 Silent p.T73T 0.35 TCGA-A6-5665-01 2 99294930 99294930 T - MGAT4A Frame_Shift_Del p.K33Nfs*2 0.30 TCGA-A6-5665-01 2 99767448 99767448 T - C2ORF15 3'UTR 0.20 TCGA-A6-5665-01 2 99779233 99779233 G A LIPT1 Nonsense_Mutation p.W271* 0.36 TCGA-A6-5665-01 3 10291133 10291135 CTT - TATDN2 In_Frame_Del p.F84del 0.68 TCGA-A6-5665-01 3 10370440 10370440 G A ATP2B2 3'UTR 0.41 TCGA-A6-5665-01 3 107447755 107447755 C - BBX Frame_Shift_Del p.K185Rfs*24 0.13 TCGA-A6-5665-01 3 107882550 107882550 T - IFT57 Frame_Shift_Del p.K357Nfs*11 0.27 TCGA-A6-5665-01 3 108474723 108474723 A G RETNLB Missense_Mutation p.Y80H 0.30 deleterious(0.05) possibly_damaging(0.615) TCGA-A6-5665-01 3 11078701 11078701 A C SLC6A1 3'UTR 0.35 TCGA-A6-5665-01 3 111686543 111686543 A - PHLDB2 Frame_Shift_Del p.K1064Nfs*28 0.24 TCGA-A6-5665-01 3 112548223 112548223 T C CD200R1L Missense_Mutation p.S19G 0.30 tolerated(0.06) benign(0.153) TCGA-A6-5665-01 3 113329854 113329854 G A SIDT1 Splice_Site p.X574_splice 0.32 TCGA-A6-5665-01 3 113380088 113380088 A - KIAA2018 Frame_Shift_Del p.I148Lfs*21 0.22 TCGA-A6-5665-01 3 113673074 113673074 C T ZDHHC23 Missense_Mutation p.S230L 0.36 tolerated(0.18) benign(0.009) TCGA-A6-5665-01 3 11399971 11399971 G A ATG7 Missense_Mutation p.R455H 0.39 deleterious(0.02) benign(0.032) TCGA-A6-5665-01 3 11606428 11606428 C T VGLL4 Missense_Mutation p.R113H 0.42 tolerated(0.3) probably_damaging(0.988) TCGA-A6-5665-01 3 119305343 119305343 G - ADPRH Frame_Shift_Del p.A172Pfs*12 0.32 TCGA-A6-5665-01 3 121386352 121386352 A C GOLGB1 Silent p.A3180A 0.33 TCGA-A6-5665-01 3 122640835 122640835 C T SEMA5B Missense_Mutation p.A593T 0.55 tolerated(0.13) benign(0.022) TCGA-A6-5665-01 3 122647387 122647387 A - SEMA5B Frame_Shift_Del p.S259Pfs*136 0.24 TCGA-A6-5665-01 3 123675853 123675853 C T CCDC14 Intron 0.27 TCGA-A6-5665-01 3 125725958 125725958 G A SLC41A3 Silent p.L455L 0.33 TCGA-A6-5665-01 3 125775225 125775225 G A SLC41A3 Intron 0.34 TCGA-A6-5665-01 3 125869309 125869309 C T ALDH1L1 Silent p.G318G 0.32 TCGA-A6-5665-01 3 126154441 126154441 G T CCDC37 Missense_Mutation p.Q556H 0.39 tolerated(0.05) possibly_damaging(0.755) TCGA-A6-5665-01 3 126723488 126723488 A G PLXNA1 Missense_Mutation p.Y518C 0.35 deleterious(0) probably_damaging(0.943) TCGA-A6-5665-01 3 127323812 127323812 G A MCM2 Silent p.E162E 0.18 TCGA-A6-5665-01 3 128994050 128994050 T C COPG1 Silent p.N803N 0.35 TCGA-A6-5665-01 3 132320115 132320115 G A ACKR4 Missense_Mutation p.A292T 0.24 deleterious(0) probably_damaging(0.996) TCGA-A6-5665-01 3 133191308 133191308 G A BFSP2 Silent p.A381A 0.45 TCGA-A6-5665-01 3 133336054 133336054 T C TOPBP1 Missense_Mutation p.I1237V 0.29 tolerated(0.12) benign(0.071) TCGA-A6-5665-01 3 133372307 133372307 A - TOPBP1 Frame_Shift_Del p.F268Lfs*53 0.12 TCGA-A6-5665-01 3 133476713 133476714 - C TF Frame_Shift_Ins p.R327Qfs*11 0.26 TCGA-A6-5665-01 3 13381789 13381789 G T NUP210 Missense_Mutation p.P1080T 0.39 deleterious(0) probably_damaging(0.988) TCGA-A6-5665-01 3 135980817 135980817 G - PCCB Frame_Shift_Del p.A173Lfs*3 0.36 TCGA-A6-5665-01 3 13679226 13679226 T G FBLN2 Missense_Mutation p.I1168S 0.25 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 3 138213608 138213608 T C CEP70 3'UTR 0.50 TCGA-A6-5665-01 3 139236327 139236328 - A RBP1 3'UTR 0.22 TCGA-A6-5665-01 3 142037649 142037649 A G XRN1 Missense_Mutation p.F1500L 0.36 tolerated_low_confidence(0.19) benign(0.213) TCGA-A6-5665-01 3 1427449 1427450 - C CNTN6 Frame_Shift_Ins p.V894Sfs*25 0.22 TCGA-A6-5665-01 3 142840593 142840593 C T CHST2 Missense_Mutation p.A312V 0.41 tolerated(0.24) benign(0.109) TCGA-A6-5665-01 3 14563273 14563273 G A GRIP2 RNA 0.28 TCGA-A6-5665-01 3 146243390 146243390 A G PLSCR1 Splice_Site p.X119_splice 0.36 TCGA-A6-5665-01 3 14860772 14860772 A G FGD5 Missense_Mutation p.Y65C 0.36 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-A6-5665-01 3 151150682 151150682 T - MED12L 3'UTR 0.21 TCGA-A6-5665-01 3 152881075 152881076 - A RAP2B 3'UTR 0.32 TCGA-A6-5665-01 3 153840214 153840214 C T ARHGEF26 Missense_Mutation p.R145C 0.40 tolerated_low_confidence(0.1) benign(0.001) TCGA-A6-5665-01 3 155282751 155282751 A G PLCH1 Missense_Mutation p.V329A 0.37 tolerated(0.18) benign(0.075) TCGA-A6-5665-01 3 156254615 156254616 TT - KCNAB1 3'UTR 0.34 TCGA-A6-5665-01 3 157823897 157823897 C - SHOX2 5'UTR 0.59 TCGA-A6-5665-01 3 157823908 157823908 A G SHOX2 5'UTR 0.45 TCGA-A6-5665-01 3 157823920 157823920 T G SHOX2 5'UTR 0.49 TCGA-A6-5665-01 3 160037612 160037612 A G IFT80 Missense_Mutation p.V298A 0.34 deleterious(0) benign(0.26) TCGA-A6-5665-01 3 160395095 160395095 A G ARL14 5'UTR 0.22 TCGA-A6-5665-01 3 16343237 16343237 C T OXNAD1 Silent p.V179V 0.30 TCGA-A6-5665-01 3 169840447 169840449 GGT - PHC3 In_Frame_Del p.P625del 0.23 TCGA-A6-5665-01 3 170216489 170216489 C T SLC7A14 Silent p.A242A 0.43 TCGA-A6-5665-01 3 17279704 17279704 C T TBC1D5 Silent p.Q513Q 0.37 TCGA-A6-5665-01 3 180365006 180365006 C T CCDC39 Missense_Mutation p.R463Q 0.29 deleterious(0.02) possibly_damaging(0.843) TCGA-A6-5665-01 3 182681765 182681765 G A DCUN1D1 Missense_Mutation p.A98V 0.34 tolerated(0.11) benign(0.014) TCGA-A6-5665-01 3 183471990 183471990 C A YEATS2 Silent p.T409T 0.34 TCGA-A6-5665-01 3 183524684 183524684 A G YEATS2 Missense_Mutation p.N1272S 0.28 tolerated(0.25) benign(0.001) TCGA-A6-5665-01 3 183669279 183669279 G A ABCC5 Missense_Mutation p.T965M 0.36 tolerated(0.05) possibly_damaging(0.627) TCGA-A6-5665-01 3 183700635 183700635 C T ABCC5 Missense_Mutation p.R251Q 0.29 deleterious(0.01) probably_damaging(0.934) TCGA-A6-5665-01 3 183824010 183824010 C A HTR3E Silent p.P366P 0.40 TCGA-A6-5665-01 3 183952539 183952539 G A VWA5B2 Missense_Mutation p.R314Q 0.33 tolerated(0.06) benign(0.03) TCGA-A6-5665-01 3 183976127 183976128 - C ECE2 Intron 0.39 TCGA-A6-5665-01 3 184033603 184033603 T C EIF4G1 Missense_Mutation p.S7P 0.31 tolerated(1) unknown(0) TCGA-A6-5665-01 3 184039758 184039758 A G EIF4G1 Silent p.E469E 0.30 TCGA-A6-5665-01 3 184099080 184099080 C G CHRD Missense_Mutation p.P104A 0.30 tolerated(0.21) benign(0.032) TCGA-A6-5665-01 3 185637259 185637260 - TCC TRA2B In_Frame_Ins p.G249dup 0.22 TCGA-A6-5665-01 3 186337687 186337688 - G AHSG Frame_Shift_Ins p.A241Gfs*26 0.12 TCGA-A6-5665-01 3 188327173 188327173 G A LPP Silent p.R218R 0.36 TCGA-A6-5665-01 3 190366638 190366638 G A IL1RAP Intron 0.38 TCGA-A6-5665-01 3 192445089 192445089 C T RNU1-20P 3'Flank 0.42 TCGA-A6-5665-01 3 194790713 194790713 G A XXYLT1 Missense_Mutation p.L305F 0.36 deleterious(0.03) probably_damaging(0.964) TCGA-A6-5665-01 3 194999983 194999983 A - ACAP2 3'UTR 0.32 TCGA-A6-5665-01 3 195390958 195390958 T C SDHAP2 Intron 0.19 TCGA-A6-5665-01 3 195505712 195505712 T C MUC4 Missense_Mutation p.T4247A 0.32 benign(0.081) TCGA-A6-5665-01 3 197422807 197422807 G T KIAA0226 Missense_Mutation p.P468Q 0.38 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 3 23942374 23942374 A G NKIRAS1 Silent p.S87S 0.10 TCGA-A6-5665-01 3 27463245 27463245 A T SLC4A7 Missense_Mutation p.I422N 0.37 deleterious(0) probably_damaging(0.958) TCGA-A6-5665-01 3 32280541 32280541 G A CMTM8 Missense_Mutation p.S26N 0.37 tolerated(0.08) benign(0.003) TCGA-A6-5665-01 3 33138568 33138568 A G GLB1 Missense_Mutation p.F4L 0.30 tolerated_low_confidence(0.32) benign(0.294) TCGA-A6-5665-01 3 33138660 33138661 - C GLB1 5'UTR 0.29 TCGA-A6-5665-01 3 37285055 37285055 T C GOLGA4 Missense_Mutation p.L5P 0.38 unknown(0) TCGA-A6-5665-01 3 37343741 37343741 T C GOLGA4 Silent p.I406I 0.39 TCGA-A6-5665-01 3 391204 391204 C T CHL1 Silent p.H337H 0.35 TCGA-A6-5665-01 3 39229053 39229053 C T XIRP1 Nonsense_Mutation p.W628* 0.40 TCGA-A6-5665-01 3 40192666 40192666 G A MYRIP Missense_Mutation p.D154N 0.29 deleterious(0) probably_damaging(0.924) TCGA-A6-5665-01 3 41938316 41938316 G - ULK4 Frame_Shift_Del p.L510Cfs*5 0.40 TCGA-A6-5665-01 3 41949374 41949374 G A ULK4 Missense_Mutation p.T382I 0.40 tolerated(0.22) benign(0.003) TCGA-A6-5665-01 3 45637325 45637325 G - LIMD1 Frame_Shift_Del p.G320Vfs*6 0.30 TCGA-A6-5665-01 3 46945152 46945152 C T PTH1R 3'UTR 0.44 TCGA-A6-5665-01 3 47108599 47108599 G A SETD2 Nonsense_Mutation p.R2024* 0.36 TCGA-A6-5665-01 3 47163802 47163802 A C SETD2 Missense_Mutation p.V775G 0.34 tolerated_low_confidence(0.07) benign(0.001) TCGA-A6-5665-01 3 47451293 47451293 C T PTPN23 Missense_Mutation p.R700C 0.31 unknown(0) TCGA-A6-5665-01 3 47451743 47451743 C T PTPN23 Missense_Mutation p.P819S 0.34 unknown(0) TCGA-A6-5665-01 3 47956358 47956358 C T MAP4 Missense_Mutation p.E650K 0.06 deleterious(0.03) benign(0.005) TCGA-A6-5665-01 3 4842228 4842228 C T ITPR1 Nonsense_Mutation p.R2336* 0.42 TCGA-A6-5665-01 3 48602260 48602260 C T COL7A1 Missense_Mutation p.C2925Y 0.38 probably_damaging(0.969) TCGA-A6-5665-01 3 48629411 48629411 A G COL7A1 Missense_Mutation p.L426P 0.27 unknown(0) TCGA-A6-5665-01 3 48685707 48685707 G T CELSR3 Missense_Mutation p.P2322H 0.40 deleterious(0.01) probably_damaging(1) TCGA-A6-5665-01 3 49051028 49051028 C T WDR6 Silent p.G717G 0.48 TCGA-A6-5665-01 3 49065920 49065920 G A IMPDH2 Silent p.L65L 0.33 TCGA-A6-5665-01 3 49168288 49168288 G A LAMB2 Silent p.H307H 0.34 TCGA-A6-5665-01 3 49343236 49343236 A G USP4 Missense_Mutation p.M347T 0.28 deleterious(0) possibly_damaging(0.581) TCGA-A6-5665-01 3 49699887 49699887 A G BSN Missense_Mutation p.M3537V 0.22 unknown(0) TCGA-A6-5665-01 3 49720783 49720783 C T APEH 3'UTR 0.44 TCGA-A6-5665-01 3 50131304 50131304 G A RBM5 Missense_Mutation p.S112N 0.34 tolerated(1) benign(0.001) TCGA-A6-5665-01 3 50222050 50222050 C A SEMA3F Missense_Mutation p.S420Y 0.33 tolerated(0.87) possibly_damaging(0.61) TCGA-A6-5665-01 3 50327888 50327888 T C IFRD2 Missense_Mutation p.D129G 0.42 deleterious(0.01) benign(0.084) TCGA-A6-5665-01 3 52097400 52097401 - C LINC00696 Frame_Shift_Ins p.E57Rfs*6 0.33 TCGA-A6-5665-01 3 53220292 53220292 G A PRKCD Missense_Mutation p.R399Q 0.36 deleterious(0.01) possibly_damaging(0.804) TCGA-A6-5665-01 3 69026592 69026592 A - EOGT 3'UTR 0.24 TCGA-A6-5665-01 3 69047185 69047185 C T EOGT Missense_Mutation p.V270M 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-A6-5665-01 3 71759632 71759632 G T EIF4E3 Silent p.S60S 0.29 TCGA-A6-5665-01 3 7620692 7620692 C A GRM7 Missense_Mutation p.T700K 0.31 tolerated(0.48) probably_damaging(0.94) TCGA-A6-5665-01 3 8574500 8574500 A G LMCD1 Silent p.P40P 0.29 TCGA-A6-5665-01 3 8775547 8775548 - C CAV3 5'UTR 0.30 TCGA-A6-5665-01 3 9032478 9032478 G A SRGAP3 Silent p.S868S 0.31 TCGA-A6-5665-01 3 9485007 9485007 G A SETD5 Missense_Mutation p.A365T 0.39 tolerated(0.12) probably_damaging(0.909) TCGA-A6-5665-01 3 9771490 9771490 T C CPNE9 3'UTR 0.39 TCGA-A6-5665-01 3 97983476 97983476 A T OR5H6 Missense_Mutation p.Q116H 0.31 deleterious(0) benign(0.369) TCGA-A6-5665-01 3 9932387 9932387 G - JAGN1 5'UTR 0.47 TCGA-A6-5665-01 3 99514984 99514985 - A COL8A1 3'UTR 0.38 TCGA-A6-5665-01 4 100503173 100503173 G A MTTP Missense_Mutation p.R58H 0.27 deleterious(0) possibly_damaging(0.751) TCGA-A6-5665-01 4 101109123 101109123 G A DDIT4L Missense_Mutation p.T98M 0.33 tolerated(0.1) benign(0.093) TCGA-A6-5665-01 4 103790342 103790342 C T CISD2 Missense_Mutation p.T34I 0.32 tolerated(0.08) benign(0.059) TCGA-A6-5665-01 4 104070141 104070141 C A CENPE Nonsense_Mutation p.E1235* 0.35 TCGA-A6-5665-01 4 10445140 10445140 C T ZNF518B Missense_Mutation p.R938H 0.23 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 4 10446914 10446914 A G ZNF518B Silent p.L347L 0.06 TCGA-A6-5665-01 4 10448055 10448055 G A ZNF518B 5'UTR 0.30 TCGA-A6-5665-01 4 105412123 105412123 G A CXXC4 Silent p.D279D 0.39 TCGA-A6-5665-01 4 106160337 106160337 T C TET2 Intron 0.26 TCGA-A6-5665-01 4 106160355 106160355 T C TET2 Intron 0.27 TCGA-A6-5665-01 4 106163792 106163792 T G TET2 Intron 0.06 TCGA-A6-5665-01 4 106601195 106601195 C T ARHGEF38 3'UTR 0.38 TCGA-A6-5665-01 4 107173115 107173115 T C TBCK Missense_Mutation p.T169A 0.28 tolerated(0.57) benign(0.002) TCGA-A6-5665-01 4 110384653 110384653 C T SEC24B Missense_Mutation p.P244S 0.35 tolerated_low_confidence(0.14) possibly_damaging(0.765) TCGA-A6-5665-01 4 110754363 110754363 C T RRH Missense_Mutation p.P59S 0.32 deleterious(0.02) benign(0.177) TCGA-A6-5665-01 4 113332972 113332972 T G ALPK1 Intron 0.32 TCGA-A6-5665-01 4 113460743 113460743 T - C4orf21 Frame_Shift_Del p.K2092Rfs*25 0.29 TCGA-A6-5665-01 4 122301676 122301676 G A QRFPR Missense_Mutation p.R43C 0.31 tolerated(0.18) possibly_damaging(0.586) TCGA-A6-5665-01 4 123283461 123283461 T - KIAA1109 3'UTR 0.27 TCGA-A6-5665-01 4 123665494 123665494 C T BBS12 3'UTR 0.39 TCGA-A6-5665-01 4 126238915 126238915 C T FAT4 Missense_Mutation p.A450V 0.39 benign(0.307) TCGA-A6-5665-01 4 126372694 126372694 C A FAT4 Missense_Mutation p.P3508H 0.42 probably_damaging(0.999) TCGA-A6-5665-01 4 128751791 128751791 A G HSPA4L Splice_Site p.X723_splice 0.38 TCGA-A6-5665-01 4 128949994 128949994 T C C4orf29 Missense_Mutation p.V355A 0.32 deleterious(0) possibly_damaging(0.489) TCGA-A6-5665-01 4 134073879 134073879 G A PCDH10 Missense_Mutation p.D862N 0.36 tolerated(0.45) probably_damaging(0.93) TCGA-A6-5665-01 4 134084234 134084234 C T PCDH10 Missense_Mutation p.A967V 0.36 tolerated(0.11) benign(0.293) TCGA-A6-5665-01 4 13588061 13588061 C T BOD1L1 Missense_Mutation p.A2798T 0.27 benign(0.015) TCGA-A6-5665-01 4 1360194 1360194 C - UVSSA Frame_Shift_Del p.D423Tfs*161 0.32 TCGA-A6-5665-01 4 141489777 141489777 G A UCP1 Missense_Mutation p.T36M 0.33 deleterious(0) probably_damaging(0.971) TCGA-A6-5665-01 4 144106839 144106839 T C USP38 Missense_Mutation p.F79S 0.43 deleterious(0.01) possibly_damaging(0.795) TCGA-A6-5665-01 4 144469167 144469167 T C SMARCA5 Silent p.R953R 0.40 TCGA-A6-5665-01 4 145628342 145628342 G A HHIP Missense_Mutation p.G363S 0.06 deleterious(0) probably_damaging(0.987) TCGA-A6-5665-01 4 146044636 146044636 A G ABCE1 Missense_Mutation p.I508M 0.38 deleterious(0.05) probably_damaging(0.91) TCGA-A6-5665-01 4 146435880 146435880 A - SMAD1 Frame_Shift_Del p.K40Nfs*2 0.28 TCGA-A6-5665-01 4 147560304 147560304 G C POU4F2 Missense_Mutation p.M4I 0.29 deleterious_low_confidence(0) benign(0.019) TCGA-A6-5665-01 4 155665338 155665338 C T LRAT 5'UTR 0.45 TCGA-A6-5665-01 4 155670207 155670207 G A LRAT Silent p.A204A 0.37 TCGA-A6-5665-01 4 15780175 15780175 G A CD38 Nonsense_Mutation p.W46* 0.35 TCGA-A6-5665-01 4 158262579 158262579 A G GRIA2 Missense_Mutation p.T670A 0.33 deleterious(0.02) possibly_damaging(0.73) TCGA-A6-5665-01 4 159590815 159590815 A G C4orf46 Missense_Mutation p.W98R 0.39 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-A6-5665-01 4 160260469 160260469 C G RAPGEF2 Missense_Mutation p.L672V 0.48 deleterious(0.01) probably_damaging(0.928) TCGA-A6-5665-01 4 166964498 166964498 C T TLL1 Missense_Mutation p.P484L 0.36 deleterious(0) possibly_damaging(0.731) TCGA-A6-5665-01 4 173734827 173734827 C - GALNTL6 Frame_Shift_Del p.I294Sfs*41 0.25 TCGA-A6-5665-01 4 1742708 1742708 C T TACC3 Missense_Mutation p.R740C 0.39 deleterious(0) probably_damaging(0.932) TCGA-A6-5665-01 4 175412874 175412875 - T HPGD 3'UTR 0.33 TCGA-A6-5665-01 4 177081240 177081240 C T WDR17 Missense_Mutation p.S898L 0.22 tolerated(0.11) benign(0.008) TCGA-A6-5665-01 4 1806570 1806570 C T FGFR3 Missense_Mutation p.A431V 0.30 tolerated(0.05) benign(0.009) TCGA-A6-5665-01 4 183721175 183721175 C T TENM3 Missense_Mutation p.R2591C 0.40 deleterious(0) possibly_damaging(0.876) TCGA-A6-5665-01 4 183721176 183721176 G A TENM3 Missense_Mutation p.R2591H 0.32 deleterious(0) possibly_damaging(0.84) TCGA-A6-5665-01 4 183721185 183721185 C T TENM3 Missense_Mutation p.A2594V 0.31 tolerated(0.17) possibly_damaging(0.75) TCGA-A6-5665-01 4 185616343 185616343 A G CENPU 3'UTR 0.32 TCGA-A6-5665-01 4 186188235 186188235 C A SNX25 Silent p.T175T 0.16 TCGA-A6-5665-01 4 187158019 187158019 A - KLKB1 Frame_Shift_Del p.R140Gfs*29 0.28 TCGA-A6-5665-01 4 187517756 187517756 G - FAT1 Frame_Shift_Del p.P4313Lfs*36 0.29 TCGA-A6-5665-01 4 1919949 1919949 G A WHSC1 Missense_Mutation p.V337M 0.35 tolerated(0.12) benign(0.444) TCGA-A6-5665-01 4 2065765 2065765 G A NAT8L Missense_Mutation p.V274M 0.33 tolerated(0.06) possibly_damaging(0.661) TCGA-A6-5665-01 4 2230789 2230789 G A HAUS3 3'UTR 0.33 TCGA-A6-5665-01 4 2240605 2240605 G A HAUS3 Nonsense_Mutation p.Q359* 0.28 TCGA-A6-5665-01 4 22749674 22749674 G A GBA3 Missense_Mutation p.V348M 0.34 tolerated(0.09) benign(0.219) TCGA-A6-5665-01 4 23830129 23830129 G A PPARGC1A Silent p.N217N 0.35 TCGA-A6-5665-01 4 23831157 23831157 A G PPARGC1A Missense_Mutation p.C161R 0.33 tolerated(0.31) probably_damaging(0.949) TCGA-A6-5665-01 4 24802270 24802270 G - SOD3 3'UTR 0.38 TCGA-A6-5665-01 4 24914475 24914475 G A CCDC149 Silent p.D9D 0.36 TCGA-A6-5665-01 4 25823691 25823691 C A SEL1L3 Missense_Mutation p.R406M 0.33 deleterious(0.04) possibly_damaging(0.702) TCGA-A6-5665-01 4 2695394 2695394 C T FAM193A Missense_Mutation p.A671V 0.38 deleterious(0.02) probably_damaging(0.987) TCGA-A6-5665-01 4 3517867 3517867 C T LRPAP1 Silent p.T270T 0.31 TCGA-A6-5665-01 4 37447391 37447392 - G KIAA1239 Frame_Shift_Ins p.D1262Gfs*18 0.34 TCGA-A6-5665-01 4 39098352 39098352 A G KLHL5 Missense_Mutation p.D431G 0.36 deleterious(0) benign(0.022) TCGA-A6-5665-01 4 39116878 39116879 - G KLHL5 Frame_Shift_Ins p.Y716Vfs*2 0.28 TCGA-A6-5665-01 4 39506918 39506918 T - UGDH Frame_Shift_Del p.V371Yfs*6 0.26 TCGA-A6-5665-01 4 42077754 42077754 T C SLC30A9 Missense_Mutation p.V500A 0.33 tolerated(0.48) benign(0.007) TCGA-A6-5665-01 4 44450235 44450235 G A KCTD8 Silent p.D102D 0.29 TCGA-A6-5665-01 4 44680642 44680642 G A GUF1 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.838) TCGA-A6-5665-01 4 44700812 44700812 T C GUF1 3'UTR 0.37 TCGA-A6-5665-01 4 47605503 47605503 A T CORIN Missense_Mutation p.V908D 0.37 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 4 48038331 48038331 T - NIPAL1 3'UTR 0.14 TCGA-A6-5665-01 4 48486154 48486154 C T SLC10A4 Silent p.G192G 0.46 TCGA-A6-5665-01 4 52961175 52961175 T C SPATA18 3'UTR 0.43 TCGA-A6-5665-01 4 5586456 5586456 G T EVC2 Missense_Mutation p.A984D 0.36 deleterious(0.02) possibly_damaging(0.894) TCGA-A6-5665-01 4 56736908 56736908 A C EXOC1 Missense_Mutation p.E223A 0.34 tolerated(0.59) benign(0.1) TCGA-A6-5665-01 4 56768642 56768642 G T EXOC1 Missense_Mutation p.G824C 0.38 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 4 6107362 6107362 C T JAKMIP1 Silent p.E154E 0.35 TCGA-A6-5665-01 4 6107567 6107567 G A JAKMIP1 Missense_Mutation p.A86V 0.37 tolerated(0.07) possibly_damaging(0.607) TCGA-A6-5665-01 4 66535372 66535372 C A EPHA5 Missense_Mutation p.G30V 0.29 tolerated_low_confidence(0.13) probably_damaging(0.953) TCGA-A6-5665-01 4 69796931 69796932 - G UGT2A3 Frame_Shift_Ins p.S343Ifs*11 0.12 TCGA-A6-5665-01 4 69978685 69978685 A - UGT2B7 3'UTR 0.33 TCGA-A6-5665-01 4 7012484 7012485 - T TBC1D14 Frame_Shift_Ins p.R544* 0.26 TCGA-A6-5665-01 4 70346085 70346085 A G UGT2B4 3'UTR 0.50 TCGA-A6-5665-01 4 72897708 72897708 G A NPFFR2 Silent p.E30E 0.34 TCGA-A6-5665-01 4 73186526 73186526 G A ADAMTS3 Missense_Mutation p.A336V 0.35 deleterious(0) possibly_damaging(0.905) TCGA-A6-5665-01 4 73951144 73951144 C T ANKRD17 Silent p.S2327S 0.25 TCGA-A6-5665-01 4 74276041 74276041 C T ALB Missense_Mutation p.R210W 0.33 deleterious(0.01) possibly_damaging(0.647) TCGA-A6-5665-01 4 74735223 74735223 T C CXCL1 Silent p.N12N 0.22 TCGA-A6-5665-01 4 74853361 74853361 G T PPBP Missense_Mutation p.L53I 0.35 tolerated(0.29) benign(0.01) TCGA-A6-5665-01 4 76877163 76877163 G A SDAD1 Missense_Mutation p.R661W 0.37 tolerated(0.05) benign(0.052) TCGA-A6-5665-01 4 76944586 76944586 G A CXCL10 5'UTR 0.22 TCGA-A6-5665-01 4 7770656 7770656 G T AFAP1 Missense_Mutation p.P778Q 0.30 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 4 77817194 77817194 C A SOWAHB Missense_Mutation p.K603N 0.30 deleterious(0.03) benign(0.403) TCGA-A6-5665-01 4 77955857 77955857 C T SEPT11 3'UTR 0.34 TCGA-A6-5665-01 4 79240101 79240101 A G FRAS1 Missense_Mutation p.R700G 0.30 benign(0.002) TCGA-A6-5665-01 4 83803057 83803057 C T SEC31A Missense_Mutation p.M11I 0.37 tolerated(0.44) benign(0.001) TCGA-A6-5665-01 4 84188773 84188773 G A COQ2 Missense_Mutation p.A356V 0.30 tolerated(0.05) benign(0.108) TCGA-A6-5665-01 4 85414495 85414495 C T NKX6-1 Missense_Mutation p.G351S 0.41 tolerated_low_confidence(0.2) unknown(0) TCGA-A6-5665-01 4 8607775 8607775 A G CPZ Missense_Mutation p.M257V 0.33 deleterious(0.03) benign(0.013) TCGA-A6-5665-01 4 88767546 88767546 A G MEPE Missense_Mutation p.D509G 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-A6-5665-01 4 88968018 88968018 T C PKD2 Missense_Mutation p.V515A 0.34 deleterious(0) benign(0.209) TCGA-A6-5665-01 4 89649710 89649710 T A FAM13A Nonsense_Mutation p.R1016* 0.34 TCGA-A6-5665-01 4 951640 951640 G A TMEM175 Missense_Mutation p.V291M 0.48 deleterious(0) probably_damaging(0.992) TCGA-A6-5665-01 4 96163663 96163663 G A UNC5C Missense_Mutation p.A342V 0.43 tolerated(0.22) benign(0.109) TCGA-A6-5665-01 4 9785349 9785349 G C DRD5 3'UTR 0.28 TCGA-A6-5665-01 4 99982530 99982530 C G METAP1 3'UTR 0.35 TCGA-A6-5665-01 5 11082831 11082831 T C CTNND2 Missense_Mutation p.D922G 0.26 deleterious(0.02) probably_damaging(1) TCGA-A6-5665-01 5 112769012 112769012 C T TSSK1B 3'UTR 0.30 TCGA-A6-5665-01 5 112862484 112862484 T C YTHDC2 Splice_Site p.X225_splice 0.40 TCGA-A6-5665-01 5 11346664 11346664 G A CTNND2 Missense_Mutation p.A483V 0.25 deleterious(0.01) benign(0.069) TCGA-A6-5665-01 5 115423210 115423210 T C COMMD10 Missense_Mutation p.S20P 0.31 tolerated(0.13) benign(0.012) TCGA-A6-5665-01 5 118861658 118861658 T G HSD17B4 Silent p.S565S 0.29 TCGA-A6-5665-01 5 121489193 121489194 - A ZNF474 3'UTR 0.28 TCGA-A6-5665-01 5 1243866 1243866 C T SLC6A18 Missense_Mutation p.A443V 0.33 tolerated(1) benign(0.015) TCGA-A6-5665-01 5 126993425 126993425 T C CTXN3 Missense_Mutation p.L71P 0.26 deleterious(0) probably_damaging(0.977) TCGA-A6-5665-01 5 127595036 127595036 G T FBN2 3'UTR 0.39 TCGA-A6-5665-01 5 127645764 127645764 C A FBN2 Missense_Mutation p.G1704V 0.33 deleterious(0) probably_damaging(0.964) TCGA-A6-5665-01 5 129030544 129030544 A G ADAMTS19 Missense_Mutation p.T978A 0.04 tolerated(0.25) benign(0.006) TCGA-A6-5665-01 5 129240556 129240556 G A CHSY3 Missense_Mutation p.V12M 0.33 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-A6-5665-01 5 132652314 132652314 C T FSTL4 Missense_Mutation p.R147H 0.34 tolerated(0.11) benign(0.028) TCGA-A6-5665-01 5 135489590 135489590 T C SMAD5 Silent p.G47G 0.33 TCGA-A6-5665-01 5 135692320 135692320 T C TRPC7 Silent p.L252L 0.29 TCGA-A6-5665-01 5 13716676 13716676 A G DNAH5 Missense_Mutation p.F4277L 0.35 benign(0) TCGA-A6-5665-01 5 137523096 137523096 G C KIF20A Missense_Mutation p.K889N 0.33 tolerated_low_confidence(0.14) benign(0.012) TCGA-A6-5665-01 5 137542306 137542306 C A CDC23 Missense_Mutation p.R101L 0.37 deleterious(0) possibly_damaging(0.752) TCGA-A6-5665-01 5 137680536 137680537 - C FAM53C Frame_Shift_Ins p.H55Pfs*6 0.29 TCGA-A6-5665-01 5 137682562 137682562 C T FAM53C Missense_Mutation p.R365W 0.36 deleterious(0) probably_damaging(0.942) TCGA-A6-5665-01 5 137721783 137721783 C T KDM3B Missense_Mutation p.R285W 0.17 deleterious(0) probably_damaging(0.993) TCGA-A6-5665-01 5 137846839 137846839 C T ETF1 Missense_Mutation p.V305I 0.39 tolerated(0.44) benign(0.033) TCGA-A6-5665-01 5 138665061 138665061 C T MATR3 Missense_Mutation p.R841C 0.38 tolerated_low_confidence(0.17) benign(0.27) TCGA-A6-5665-01 5 140176939 140176939 T C PCDHA2 Splice_Site p.X796_splice 0.17 TCGA-A6-5665-01 5 140248964 140248964 C T PCDHA11 Silent p.R92R 0.25 TCGA-A6-5665-01 5 140251073 140251073 C A PCDHA11 Silent p.P795P 0.06 TCGA-A6-5665-01 5 140256904 140256904 T C PCDHA12 Missense_Mutation p.V616A 0.38 tolerated_low_confidence(0.16) benign(0.02) TCGA-A6-5665-01 5 140451 140451 T C PLEKHG4B Missense_Mutation p.L10P 0.38 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 5 140474343 140474343 C A PCDHB2 5'UTR 0.47 TCGA-A6-5665-01 5 140503688 140503688 C T PCDHB4 Missense_Mutation p.S703L 0.30 deleterious_low_confidence(0) benign(0.082) TCGA-A6-5665-01 5 140515021 140515021 A G PCDHB5 Missense_Mutation p.E2G 0.33 deleterious_low_confidence(0) benign(0.193) TCGA-A6-5665-01 5 140553130 140553130 C T PCDHB7 Silent p.N238N 0.32 TCGA-A6-5665-01 5 140554197 140554197 G A PCDHB7 Missense_Mutation p.G594D 0.33 tolerated_low_confidence(0.07) possibly_damaging(0.828) TCGA-A6-5665-01 5 140559951 140559952 - T PCDHB8 Frame_Shift_Ins p.G781Wfs*9 0.31 TCGA-A6-5665-01 5 140573734 140573734 G A PCDHB10 Missense_Mutation p.G537S 0.24 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-A6-5665-01 5 140581778 140581778 T G PCDHB11 3'UTR 0.37 TCGA-A6-5665-01 5 140590276 140590276 C T PCDHB12 Silent p.N599N 0.28 TCGA-A6-5665-01 5 140594499 140594499 G A PCDHB13 Silent p.T268T 0.37 TCGA-A6-5665-01 5 140769104 140769104 C T PCDHGB4 Silent p.D551D 0.34 TCGA-A6-5665-01 5 140789194 140789194 C T PCDHGB6 Silent p.S475S 0.37 TCGA-A6-5665-01 5 140799380 140799380 C T PCDHGB7 Missense_Mutation p.P652S 0.35 deleterious(0.02) probably_damaging(0.964) TCGA-A6-5665-01 5 140802115 140802115 C T PCDHGA11 Silent p.L441L 0.38 TCGA-A6-5665-01 5 140802633 140802633 C T PCDHGA11 Silent p.S613S 0.33 TCGA-A6-5665-01 5 140811649 140811649 C T PCDHGA12 Silent p.N441N 0.42 TCGA-A6-5665-01 5 141027589 141027589 A C FCHSD1 Silent p.A217A 0.35 TCGA-A6-5665-01 5 141039457 141039457 C T ARAP3 Silent p.T1052T 0.33 TCGA-A6-5665-01 5 141050162 141050162 A G ARAP3 Missense_Mutation p.V675A 0.28 tolerated(0.49) possibly_damaging(0.622) TCGA-A6-5665-01 5 141335365 141335365 G - PCDH12 Frame_Shift_Del p.L685Yfs*7 0.32 TCGA-A6-5665-01 5 14387606 14387606 G A TRIO Silent p.G1210G 0.38 TCGA-A6-5665-01 5 1443245 1443245 G A SLC6A3 Missense_Mutation p.A23V 0.38 tolerated(0.07) benign(0.006) TCGA-A6-5665-01 5 145537356 145537356 A G LARS Silent p.G258G 0.32 TCGA-A6-5665-01 5 147807397 147807397 G - FBXO38 Intron 0.35 TCGA-A6-5665-01 5 148753977 148753977 G A IL17B Silent p.R166R 0.71 TCGA-A6-5665-01 5 149447776 149447776 A G CSF1R Splice_Site p.X542_splice 0.14 TCGA-A6-5665-01 5 149921199 149921199 A C NDST1 Missense_Mutation p.K606T 0.37 deleterious(0) probably_damaging(0.991) TCGA-A6-5665-01 5 150050091 150050091 T G MYOZ3 Missense_Mutation p.L36R 0.36 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 5 150078141 150078141 C T RBM22 Missense_Mutation p.R64H 0.39 tolerated(0.11) probably_damaging(0.999) TCGA-A6-5665-01 5 150275664 150275664 T - ZNF300 Frame_Shift_Del p.K395Nfs*18 0.24 TCGA-A6-5665-01 5 153789255 153789255 C T GALNT10 Missense_Mutation p.T440M 0.15 tolerated(0.05) benign(0.161) TCGA-A6-5665-01 5 154393404 154393404 G A KIF4B 5'UTR 0.37 TCGA-A6-5665-01 5 154395926 154395926 A G KIF4B Missense_Mutation p.D836G 0.35 deleterious(0) probably_damaging(0.991) TCGA-A6-5665-01 5 154397616 154397616 T C KIF4B 3'UTR 0.40 TCGA-A6-5665-01 5 156769909 156769910 - C FNDC9 Frame_Shift_Ins p.G213Wfs*2 0.34 TCGA-A6-5665-01 5 162900246 162900246 A G HMMR Missense_Mutation p.I238V 0.40 tolerated(0.16) probably_damaging(0.995) TCGA-A6-5665-01 5 16508832 16508832 A - FAM134B Intron 0.23 TCGA-A6-5665-01 5 171517334 171517334 C G STK10 Silent p.R529R 0.35 TCGA-A6-5665-01 5 173036284 173036284 G A BOD1 Silent p.P172P 0.38 TCGA-A6-5665-01 5 173317524 173317525 AT - CPEB4 Frame_Shift_Del p.H263Qfs*6 0.33 TCGA-A6-5665-01 5 174919264 174919264 A G SFXN1 Missense_Mutation p.D53G 0.32 tolerated(0.23) benign(0.102) TCGA-A6-5665-01 5 175110862 175110862 C T HRH2 Missense_Mutation p.A209V 0.31 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 5 175305939 175305939 G - CPLX2 Frame_Shift_Del p.G22Efs*51 0.31 TCGA-A6-5665-01 5 176309044 176309044 A G HK3 Missense_Mutation p.M713T 0.27 tolerated(0.74) benign(0.116) TCGA-A6-5665-01 5 176524306 176524306 C T FGFR4 Missense_Mutation p.R723C 0.44 deleterious(0.02) probably_damaging(0.992) TCGA-A6-5665-01 5 176884397 176884397 C T DBN1 3'UTR 0.35 TCGA-A6-5665-01 5 177651531 177651531 C T PHYKPL Missense_Mutation p.R179Q 0.39 deleterious(0.03) benign(0.167) TCGA-A6-5665-01 5 178415995 178415995 G A GRM6 Missense_Mutation p.A432V 0.34 tolerated(0.22) benign(0.42) TCGA-A6-5665-01 5 178559313 178559313 T - ADAMTS2 Splice_Site p.X737_splice 0.27 TCGA-A6-5665-01 5 178996308 178996309 TC - RUFY1 Frame_Shift_Del p.F237Lfs*2 0.27 TCGA-A6-5665-01 5 17926985 17926985 C A RP11-454P21.1 RNA 0.34 TCGA-A6-5665-01 5 179320406 179320406 G A TBC1D9B Silent p.F213F 0.41 TCGA-A6-5665-01 5 179743770 179743770 G A GFPT2 Silent p.A382A 0.35 TCGA-A6-5665-01 5 180278083 180278083 T C ZFP62 Missense_Mutation p.K138E 0.34 tolerated(1) benign(0.002) TCGA-A6-5665-01 5 180474984 180474984 A G BTNL9 Missense_Mutation p.E56G 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-A6-5665-01 5 1881947 1881947 G A IRX4 Missense_Mutation p.S91L 0.46 deleterious(0.02) benign(0.019) TCGA-A6-5665-01 5 21854856 21854857 - G CDH12 Frame_Shift_Ins p.T191Dfs*22 0.24 TCGA-A6-5665-01 5 26881286 26881287 - T CDH9 Frame_Shift_Ins p.L777Tfs*8 0.30 TCGA-A6-5665-01 5 32229832 32229832 T C MTMR12 3'UTR 0.34 TCGA-A6-5665-01 5 32789530 32789530 C A AC026703.1 Nonsense_Mutation p.S8* 0.36 TCGA-A6-5665-01 5 32790227 32790227 A - NPR3 3'UTR 0.27 TCGA-A6-5665-01 5 33938220 33938220 C T RXFP3 Missense_Mutation p.R459C 0.19 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-A6-5665-01 5 34028865 34028865 C T C1QTNF3 Missense_Mutation p.V232I 0.30 tolerated(0.33) probably_damaging(0.924) TCGA-A6-5665-01 5 3599722 3599722 C T IRX1 Silent p.D220D 0.37 TCGA-A6-5665-01 5 36984789 36984789 A - NIPBL Frame_Shift_Del p.R505Efs*35 0.29 TCGA-A6-5665-01 5 36984906 36984906 A G NIPBL Missense_Mutation p.S542G 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-A6-5665-01 5 37059103 37059108 AGATTC - NIPBL In_Frame_Del p.D2514_S2515del 0.15 TCGA-A6-5665-01 5 37187575 37187575 C T C5orf42 Missense_Mutation p.E1341K 0.34 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 5 37701189 37701189 C T WDR70 Nonsense_Mutation p.R408* 0.39 TCGA-A6-5665-01 5 38438498 38438498 G T EGFLAM Missense_Mutation p.R802M 0.26 tolerated(0.06) possibly_damaging(0.594) TCGA-A6-5665-01 5 41010141 41010141 A G MROH2B Missense_Mutation p.V1059A 0.45 tolerated(0.17) benign(0.007) TCGA-A6-5665-01 5 41199970 41199970 C A C6 Missense_Mutation p.Q115H 0.05 deleterious(0) probably_damaging(0.99) TCGA-A6-5665-01 5 428037 428038 - C AHRR Frame_Shift_Ins p.S299Lfs*64 0.40 TCGA-A6-5665-01 5 52145292 52145292 A G ITGA1 Missense_Mutation p.Q52R 0.34 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 5 52227959 52227959 T C ITGA1 Missense_Mutation p.F952L 0.43 tolerated(0.33) probably_damaging(0.999) TCGA-A6-5665-01 5 52382788 52382788 T C ITGA2 Missense_Mutation p.F1089L 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-A6-5665-01 5 52781596 52781596 A T FST Intron 0.29 TCGA-A6-5665-01 5 53814508 53814508 C A SNX18 Silent p.A242A 0.36 TCGA-A6-5665-01 5 54405923 54405923 C T GZMA Silent p.C234C 0.37 TCGA-A6-5665-01 5 54945041 54945042 - A SLC38A9 Frame_Shift_Ins p.V352Cfs*23 0.24 TCGA-A6-5665-01 5 56180602 56180602 G T MAP3K1 Nonsense_Mutation p.G1311* 0.38 TCGA-A6-5665-01 5 56219217 56219217 T A MIER3 Missense_Mutation p.E463V 0.30 tolerated(0.1) possibly_damaging(0.57) TCGA-A6-5665-01 5 633893 633893 C - CEP72 Frame_Shift_Del p.R176Efs*23 0.35 TCGA-A6-5665-01 5 6749757 6749757 G A PAPD7 Silent p.P308P 0.32 TCGA-A6-5665-01 5 69337537 69337537 T G SERF1B Silent p.S101S 0.24 TCGA-A6-5665-01 5 73128197 73128197 G A ARHGEF28 Silent p.P353P 0.40 TCGA-A6-5665-01 5 73136377 73136377 T C ARHGEF28 Missense_Mutation p.C407R 0.38 tolerated(0.11) benign(0.063) TCGA-A6-5665-01 5 73179622 73179622 C T ARHGEF28 Nonsense_Mutation p.R990* 0.18 TCGA-A6-5665-01 5 75427680 75427680 C T SV2C Silent p.D35D 0.18 TCGA-A6-5665-01 5 78260317 78260317 T C ARSB Silent p.T204T 0.33 TCGA-A6-5665-01 5 78359598 78359598 T C DMGDH Silent p.P38P 0.32 TCGA-A6-5665-01 5 79733244 79733244 C A ZFYVE16 Missense_Mutation p.A247D 0.35 tolerated(0.05) possibly_damaging(0.556) TCGA-A6-5665-01 5 81614033 81614033 A G ATP6AP1L Missense_Mutation p.T197A 0.24 tolerated(1) benign(0.001) TCGA-A6-5665-01 5 82649332 82649332 T A XRCC4 3'UTR 0.21 TCGA-A6-5665-01 5 82833016 82833016 T C VCAN Silent p.N1398N 0.36 TCGA-A6-5665-01 5 87491928 87491928 C T TMEM161B 3'UTR 0.29 TCGA-A6-5665-01 5 89968638 89968638 C T GPR98 Intron 0.45 TCGA-A6-5665-01 5 90079016 90079016 T C GPR98 Missense_Mutation p.F4436S 0.33 possibly_damaging(0.887) TCGA-A6-5665-01 5 95728652 95728652 C T PCSK1 3'UTR 0.31 TCGA-A6-5665-01 5 96232477 96232477 G T ERAP2 Missense_Mutation p.E471D 0.32 tolerated(0.38) benign(0.004) TCGA-A6-5665-01 5 99921980 99921980 G - FAM174A 3'UTR 0.36 TCGA-A6-5665-01 5 99921997 99921997 A G FAM174A 3'UTR 0.34 TCGA-A6-5665-01 6 100062224 100062224 C T PRDM13 Silent p.T571T 0.31 TCGA-A6-5665-01 6 101054881 101054881 T C ASCC3 Silent p.L1623L 0.04 TCGA-A6-5665-01 6 107040150 107040150 A G RTN4IP1 Missense_Mutation p.V232A 0.32 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 6 107390189 107390189 C T BEND3 Missense_Mutation p.V736M 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-A6-5665-01 6 107391601 107391602 - C BEND3 Frame_Shift_Ins p.D265Gfs*95 0.23 TCGA-A6-5665-01 6 109764725 109764725 G A SMPD2 Missense_Mutation p.A297T 0.36 tolerated(0.17) benign(0.007) TCGA-A6-5665-01 6 109995439 109995439 C T AK9 Missense_Mutation p.R48H 0.32 tolerated(0.15) benign(0.005) TCGA-A6-5665-01 6 110736748 110736748 A G DDO Translation_Start_Site p.M1? 0.15 benign(0.092) TCGA-A6-5665-01 6 110746117 110746117 T - SLC22A16 Frame_Shift_Del p.T565Rfs*21 0.33 TCGA-A6-5665-01 6 11191368 11191368 G - NEDD9 Frame_Shift_Del p.P245Lfs*3 0.40 TCGA-A6-5665-01 6 112480077 112480077 C T LAMA4 Silent p.A558A 0.34 TCGA-A6-5665-01 6 112575109 112575109 G A LAMA4 Intron 0.44 TCGA-A6-5665-01 6 117589557 117589557 G T VGLL2 Silent p.V98V 0.41 TCGA-A6-5665-01 6 121770781 121770781 G T GJA1 3'UTR 0.34 TCGA-A6-5665-01 6 126320672 126320672 A G TRMT11 Missense_Mutation p.S198G 0.05 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 6 130460967 130460967 G A L3MBTL3 3'UTR 0.61 TCGA-A6-5665-01 6 133004298 133004298 A G VNN1 Missense_Mutation p.V508A 0.31 tolerated_low_confidence(0.06) benign(0.003) TCGA-A6-5665-01 6 135290431 135290431 G A HBS1L Nonsense_Mutation p.R615* 0.40 TCGA-A6-5665-01 6 135358359 135358359 G T HBS1L Intron 0.41 TCGA-A6-5665-01 6 137243719 137243719 C T SLC35D3 Silent p.T51T 0.33 TCGA-A6-5665-01 6 138199944 138199945 - G TNFAIP3 Frame_Shift_Ins p.P457Afs*16 0.30 TCGA-A6-5665-01 6 138584287 138584287 C T KIAA1244 Missense_Mutation p.A556V 0.31 tolerated(0.1) benign(0.026) TCGA-A6-5665-01 6 138655233 138655233 G A KIAA1244 Silent p.V1750V 0.40 TCGA-A6-5665-01 6 142623452 142623452 C T GPR126 5'UTR 0.34 TCGA-A6-5665-01 6 142759381 142759381 A - GPR126 Frame_Shift_Del p.S1153Vfs*5 0.19 TCGA-A6-5665-01 6 148865801 148865801 C T SASH1 Silent p.P1065P 0.29 TCGA-A6-5665-01 6 150067672 150067672 A G NUP43 5'UTR 0.30 TCGA-A6-5665-01 6 150209667 150209667 C T RAET1E Nonsense_Mutation p.W253* 0.36 TCGA-A6-5665-01 6 151738448 151738448 G A RMND1 Missense_Mutation p.T389M 0.37 tolerated(0.2) possibly_damaging(0.627) TCGA-A6-5665-01 6 152129287 152129287 C - ESR1 Frame_Shift_Del p.Y80* 0.32 TCGA-A6-5665-01 6 152686039 152686040 - GCT SYNE1 In_Frame_Ins p.Q3362dup 0.24 TCGA-A6-5665-01 6 152716672 152716672 A C SYNE1 Missense_Mutation p.L2564W 0.34 possibly_damaging(0.689) TCGA-A6-5665-01 6 152771934 152771934 C T SYNE1 Missense_Mutation p.C1074Y 0.07 possibly_damaging(0.839) TCGA-A6-5665-01 6 152804288 152804289 - CT SYNE1 Frame_Shift_Ins p.E428Rfs*3 0.22 TCGA-A6-5665-01 6 158093884 158093884 G A ZDHHC14 Silent p.T399T 0.39 TCGA-A6-5665-01 6 158449950 158449950 C T SYNJ2 Missense_Mutation p.S126L 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-A6-5665-01 6 158487630 158487630 C T SYNJ2 Silent p.L560L 0.43 TCGA-A6-5665-01 6 159188450 159188450 G T EZR Missense_Mutation p.P480Q 0.31 tolerated(0.31) benign(0.099) TCGA-A6-5665-01 6 160176374 160176374 G T WTAP Missense_Mutation p.G308W 0.31 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-A6-5665-01 6 166580269 166580269 G A T Silent p.F94F 0.21 TCGA-A6-5665-01 6 168709535 168709535 G T DACT2 Missense_Mutation p.P301H 0.46 tolerated(0.63) benign(0.009) TCGA-A6-5665-01 6 170632341 170632341 T C FAM120B Missense_Mutation p.C637R 0.33 tolerated(0.46) benign(0.002) TCGA-A6-5665-01 6 21598533 21598533 T C SOX4 3'UTR 0.32 TCGA-A6-5665-01 6 22570269 22570269 C T HDGFL1 Silent p.D155D 0.26 TCGA-A6-5665-01 6 24861255 24861255 T C FAM65B Missense_Mutation p.T192A 0.28 tolerated(0.61) benign(0.019) TCGA-A6-5665-01 6 25769310 25769310 T A SLC17A4 Silent p.A63A 0.29 TCGA-A6-5665-01 6 26123900 26123900 G A HIST1H2BC Missense_Mutation p.A78V 0.33 deleterious_low_confidence(0.01) benign(0.352) TCGA-A6-5665-01 6 26156678 26156680 GAA - HIST1H1E In_Frame_Del p.K23del 0.37 TCGA-A6-5665-01 6 27220715 27220715 C T PRSS16 Silent p.T379T 0.32 TCGA-A6-5665-01 6 27775434 27775434 T C HIST1H2BL Missense_Mutation p.Y84C 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-A6-5665-01 6 27834665 27834665 C T HIST1H1B Missense_Mutation p.A215T 0.34 tolerated(0.13) unknown(0) TCGA-A6-5665-01 6 27925646 27925646 C - OR2B6 Frame_Shift_Del p.L211* 0.29 TCGA-A6-5665-01 6 28540396 28540396 G T SCAND3 Silent p.S1090S 0.36 TCGA-A6-5665-01 6 29910615 29910615 T C HLA-A Missense_Mutation p.V52A 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-5665-01 6 30546300 30546300 G A ABCF1 Silent p.E145E 0.37 TCGA-A6-5665-01 6 30638221 30638221 C T DHX16 Missense_Mutation p.R211H 0.34 deleterious(0) unknown(0) TCGA-A6-5665-01 6 30672930 30672930 G T MDC1 Missense_Mutation p.P1344T 0.35 tolerated(0.06) benign(0.081) TCGA-A6-5665-01 6 31239044 31239044 T G HLA-C Missense_Mutation p.Y142S 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-5665-01 6 31324568 31324568 C - HLA-B Frame_Shift_Del p.P81Rfs*70 0.57 TCGA-A6-5665-01 6 31605302 31605302 G A PRRC2A Missense_Mutation p.R2138Q 0.41 unknown(0) TCGA-A6-5665-01 6 31683375 31683375 T C LY6G6D Missense_Mutation p.L51P 0.19 tolerated(0.27) possibly_damaging(0.883) TCGA-A6-5665-01 6 31779603 31779603 G A HSPA1L Silent p.T49T 0.43 TCGA-A6-5665-01 6 32041691 32041691 G T RNA5SP206 3'Flank 0.35 TCGA-A6-5665-01 6 32150769 32150769 G A AGER Silent p.H180H 0.36 TCGA-A6-5665-01 6 32411240 32411240 T C HLA-DRA Missense_Mutation p.W203R 0.37 deleterious(0.01) benign(0.14) TCGA-A6-5665-01 6 32818852 32818852 G T TAP1 Missense_Mutation p.L367M 0.32 tolerated(0.56) benign(0.206) TCGA-A6-5665-01 6 33383399 33383399 C A PHF1 Missense_Mutation p.P456H 0.38 deleterious(0.03) probably_damaging(0.953) TCGA-A6-5665-01 6 33410914 33410914 A G SYNGAP1 Missense_Mutation p.N862S 0.14 tolerated(0.25) probably_damaging(0.964) TCGA-A6-5665-01 6 33630402 33630402 G A ITPR3 Missense_Mutation p.R270H 0.34 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 6 34802082 34802082 G A UHRF1BP1 Missense_Mutation p.A143T 0.34 deleterious(0) probably_damaging(0.965) TCGA-A6-5665-01 6 35047332 35047332 G A ANKS1A Missense_Mutation p.V775M 0.31 deleterious(0.04) benign(0.313) TCGA-A6-5665-01 6 35047626 35047626 G A ANKS1A Missense_Mutation p.R822H 0.37 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 6 35216537 35216537 G T SCUBE3 3'UTR 0.44 TCGA-A6-5665-01 6 36287354 36287354 A - C6orf222 Frame_Shift_Del p.Y568Tfs*12 0.31 TCGA-A6-5665-01 6 38820491 38820491 G T DNAH8 Missense_Mutation p.D1613Y 0.30 probably_damaging(0.998) TCGA-A6-5665-01 6 38820492 38820492 A T DNAH8 Missense_Mutation p.D1613V 0.29 probably_damaging(0.997) TCGA-A6-5665-01 6 38879351 38879351 G A DNAH8 Missense_Mutation p.R3066H 0.30 possibly_damaging(0.843) TCGA-A6-5665-01 6 39283980 39283980 C - KCNK16 Intron 0.50 TCGA-A6-5665-01 6 39682682 39682682 C A KIF6 Intron 0.39 TCGA-A6-5665-01 6 41029302 41029302 G A APOBEC2 Missense_Mutation p.V123M 0.27 tolerated(0.18) probably_damaging(0.999) TCGA-A6-5665-01 6 41766427 41766427 C T USP49 Silent p.T637T 0.38 TCGA-A6-5665-01 6 43271884 43271885 - G SLC22A7 Frame_Shift_Ins p.I501Dfs*148 0.26 TCGA-A6-5665-01 6 43490493 43490493 A G XPO5 3'UTR 0.31 TCGA-A6-5665-01 6 43578363 43578363 C T POLH Missense_Mutation p.R383C 0.33 deleterious(0) possibly_damaging(0.666) TCGA-A6-5665-01 6 43613039 43613039 C T RSPH9 Silent p.L68L 0.26 TCGA-A6-5665-01 6 43638593 43638593 C T RSPH9 Missense_Mutation p.P264S 0.34 deleterious_low_confidence(0.04) benign(0.02) TCGA-A6-5665-01 6 43646286 43646286 C T MRPS18A Missense_Mutation p.R74H 0.43 deleterious(0) probably_damaging(0.964) TCGA-A6-5665-01 6 44371687 44371687 T C CDC5L Silent p.T227T 0.38 TCGA-A6-5665-01 6 49825077 49825077 C T CRISP1 Missense_Mutation p.A13T 0.40 tolerated(0.17) benign(0.197) TCGA-A6-5665-01 6 4995342 4995342 A G RPP40 Silent p.A354A 0.36 TCGA-A6-5665-01 6 50791252 50791252 C - TFAP2B Frame_Shift_Del p.Y74Tfs*22 0.31 TCGA-A6-5665-01 6 50805784 50805784 G A TFAP2B Silent p.T306T 0.40 TCGA-A6-5665-01 6 52998924 52998924 G A GCM1 Missense_Mutation p.R92C 0.32 deleterious(0) probably_damaging(0.982) TCGA-A6-5665-01 6 54191606 54191606 A G TINAG Silent p.T172T 0.35 TCGA-A6-5665-01 6 55266746 55266746 T C GFRAL 3'UTR 0.39 TCGA-A6-5665-01 6 56492942 56492942 C T DST Missense_Mutation p.G961D 0.35 possibly_damaging(0.783) TCGA-A6-5665-01 6 56819306 56819306 C - BEND6 5'Flank 0.44 TCGA-A6-5665-01 6 56911530 56911530 G A KIAA1586 5'UTR 0.20 TCGA-A6-5665-01 6 56955028 56955028 G A ZNF451 5'UTR 0.08 TCGA-A6-5665-01 6 57512596 57512597 - A PRIM2 3'UTR 0.09 TCGA-A6-5665-01 6 6589069 6589069 C T LY86 Silent p.S34S 0.30 TCGA-A6-5665-01 6 7393447 7393448 - ATG RIOK1 In_Frame_Ins p.D69dup 0.17 TCGA-A6-5665-01 6 74161442 74161442 G A MB21D1 Missense_Mutation p.R155W 0.21 deleterious(0.01) possibly_damaging(0.513) TCGA-A6-5665-01 6 74228922 74228922 A G EEF1A1 Silent p.A118A 0.27 TCGA-A6-5665-01 6 75818736 75818736 C T COL12A1 Missense_Mutation p.A2700T 0.34 benign(0) TCGA-A6-5665-01 6 76023993 76023993 T - FILIP1 Frame_Shift_Del p.I519* 0.25 TCGA-A6-5665-01 6 76423416 76423416 A - SENP6 Frame_Shift_Del p.G1004Efs*11 0.29 TCGA-A6-5665-01 6 7862666 7862666 G A BMP6 Missense_Mutation p.R380H 0.29 deleterious(0.05) probably_damaging(0.971) TCGA-A6-5665-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.31 TCGA-A6-5665-01 6 84303317 84303317 C A SNAP91 Missense_Mutation p.A526S 0.48 tolerated(0.65) benign(0.364) TCGA-A6-5665-01 6 84326736 84326736 G A SNAP91 Missense_Mutation p.T277M 0.25 deleterious(0) unknown(0) TCGA-A6-5665-01 6 85447061 85447061 A G TBX18 Missense_Mutation p.L389P 0.28 tolerated(0.07) possibly_damaging(0.69) TCGA-A6-5665-01 6 89322311 89322311 A T RNGTT 3'UTR 0.42 TCGA-A6-5665-01 6 90385198 90385198 T C MDN1 Missense_Mutation p.Q4249R 0.29 benign(0.02) TCGA-A6-5665-01 6 90457187 90457187 G T MDN1 Silent p.S1255S 0.31 TCGA-A6-5665-01 6 90572249 90572249 A G CASP8AP2 RNA 0.38 TCGA-A6-5665-01 6 90604846 90604846 C T GJA10 Missense_Mutation p.A220V 0.31 deleterious(0.01) probably_damaging(0.909) TCGA-A6-5665-01 6 99285313 99285318 TACATA ACAT POU3F2 3'UTR 0.24 TCGA-A6-5665-01 7 100054376 100054376 T C C7orf61 Nonstop_Mutation p.*207Wext*10 0.33 TCGA-A6-5665-01 7 100088250 100088250 G A NYAP1 Missense_Mutation p.A686T 0.25 tolerated(0.26) possibly_damaging(0.774) TCGA-A6-5665-01 7 100192017 100192017 A T FBXO24 Missense_Mutation p.I307F 0.25 deleterious(0) benign(0.227) TCGA-A6-5665-01 7 100212900 100212900 T C MOSPD3 3'UTR 0.27 TCGA-A6-5665-01 7 100253455 100253455 C T ACTL6B Missense_Mutation p.A25T 0.28 deleterious(0.03) benign(0.21) TCGA-A6-5665-01 7 100468259 100468259 G A TRIP6 Missense_Mutation p.R298H 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-A6-5665-01 7 100678743 100678743 T C MUC17 Missense_Mutation p.V1349A 0.27 unknown(0) TCGA-A6-5665-01 7 100682208 100682208 T C MUC17 Missense_Mutation p.V2504A 0.36 benign(0.002) TCGA-A6-5665-01 7 100684785 100684785 C A MUC17 Missense_Mutation p.T3363N 0.37 possibly_damaging(0.537) TCGA-A6-5665-01 7 100701625 100701625 G A MUC17 3'UTR 0.45 TCGA-A6-5665-01 7 100839355 100839355 G A MOGAT3 Missense_Mutation p.R300C 0.48 tolerated(0.55) benign(0.004) TCGA-A6-5665-01 7 101870751 101870751 C - CUX1 Frame_Shift_Del p.I1092Sfs*39 0.41 TCGA-A6-5665-01 7 102098160 102098160 G A ALKBH4 Missense_Mutation p.A197V 0.44 tolerated(0.07) benign(0.015) TCGA-A6-5665-01 7 102584717 102584717 A G LRRC17 Missense_Mutation p.N330S 0.39 tolerated(0.53) benign(0.014) TCGA-A6-5665-01 7 102760572 102760572 T C NAPEPLD Silent p.G131G 0.32 TCGA-A6-5665-01 7 102881084 102881084 C A DPY19L2P2 RNA 0.34 TCGA-A6-5665-01 7 103032148 103032148 C T SLC26A5 Missense_Mutation p.G385D 0.36 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 7 104752463 104752463 C T KMT2E Silent p.H1420H 0.36 TCGA-A6-5665-01 7 1049694 1049694 T - C7orf50 Frame_Shift_Del p.K72Rfs*87 0.37 TCGA-A6-5665-01 7 105658298 105658298 C T CDHR3 Missense_Mutation p.T478I 0.38 deleterious(0.02) probably_damaging(0.911) TCGA-A6-5665-01 7 107427823 107427823 G T SLC26A3 Silent p.P289P 0.06 TCGA-A6-5665-01 7 110303749 110303749 G A IMMP2L Missense_Mutation p.A146V 0.42 tolerated(0.08) probably_damaging(0.996) TCGA-A6-5665-01 7 1132192 1132192 C T GPER1 Silent p.N276N 0.28 TCGA-A6-5665-01 7 114330002 114330002 A G FOXP2 3'UTR 0.31 TCGA-A6-5665-01 7 11445931 11445931 G T THSD7A Nonsense_Mutation p.C1411* 0.35 TCGA-A6-5665-01 7 116411650 116411650 A C MET Silent p.T961T 0.29 TCGA-A6-5665-01 7 117120110 117120110 C T CFTR 5'UTR 0.23 TCGA-A6-5665-01 7 119915176 119915176 A G KCND2 Missense_Mutation p.T164A 0.45 tolerated(0.85) benign(0) TCGA-A6-5665-01 7 121637957 121637957 A G PTPRZ1 Silent p.L379L 0.37 TCGA-A6-5665-01 7 12410313 12410314 - A VWDE Frame_Shift_Ins p.N589* 0.24 TCGA-A6-5665-01 7 126173729 126173729 G T GRM8 Nonsense_Mutation p.C569* 0.30 TCGA-A6-5665-01 7 126746725 126746725 A G GRM8 Silent p.S184S 0.39 TCGA-A6-5665-01 7 12692288 12692288 A G SCIN Missense_Mutation p.E699G 0.08 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 7 127724773 127724773 C A SND1 Intron 0.31 TCGA-A6-5665-01 7 128477590 128477590 G A FLNC Missense_Mutation p.A280T 0.32 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 7 128482673 128482673 C T FLNC Silent p.Y770Y 0.54 TCGA-A6-5665-01 7 130020323 130020323 C T CPA1 5'UTR 0.14 TCGA-A6-5665-01 7 133821836 133821836 C T LRGUK Missense_Mutation p.R120C 0.41 deleterious(0.02) possibly_damaging(0.891) TCGA-A6-5665-01 7 134850705 134850706 - T C7orf49 3'UTR 0.26 TCGA-A6-5665-01 7 138312995 138312996 - C SVOPL Frame_Shift_Ins p.D326Gfs*18 0.33 TCGA-A6-5665-01 7 138556026 138556027 - G KIAA1549 Frame_Shift_Ins p.E1477Gfs*3 0.32 TCGA-A6-5665-01 7 139285297 139285297 C T HIPK2 Silent p.Q767Q 0.36 TCGA-A6-5665-01 7 139717621 139717621 C T TBXAS1 Silent p.C552C 0.40 TCGA-A6-5665-01 7 140373161 140373161 G A ADCK2 Missense_Mutation p.V11I 0.36 tolerated(0.47) benign(0.007) TCGA-A6-5665-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-A6-5665-01 7 142637871 142637871 C T C7orf34 3'UTR 0.38 TCGA-A6-5665-01 7 142919822 142919823 - CT TAS2R40 Frame_Shift_Ins p.K221Sfs*20 0.27 TCGA-A6-5665-01 7 147815318 147815318 C - CNTNAP2 Frame_Shift_Del p.W833Gfs*18 0.29 TCGA-A6-5665-01 7 1481941 1481941 G - MICALL2 Frame_Shift_Del p.P533Rfs*36 0.49 TCGA-A6-5665-01 7 148876463 148876463 G A ZNF398 Missense_Mutation p.R500H 0.50 deleterious(0.04) probably_damaging(0.999) TCGA-A6-5665-01 7 149129583 149129583 G A ZNF777 Missense_Mutation p.R594C 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-A6-5665-01 7 149493731 149493731 A C SSPO RNA 0.29 TCGA-A6-5665-01 7 149500319 149500319 C T SSPO RNA 0.31 TCGA-A6-5665-01 7 150094451 150094451 G A ZNF775 Silent p.S294S 0.40 TCGA-A6-5665-01 7 150440278 150440279 - C GIMAP5 3'UTR 0.28 TCGA-A6-5665-01 7 150647482 150647482 C T KCNH2 Silent p.L724L 0.43 TCGA-A6-5665-01 7 150649927 150649927 G A KCNH2 Silent p.G381G 0.35 TCGA-A6-5665-01 7 150773331 150773332 - C SLC4A2 Intron 0.29 TCGA-A6-5665-01 7 150864236 150864236 G T GBX1 Silent p.R134R 0.31 TCGA-A6-5665-01 7 151859519 151859519 T - KMT2C Frame_Shift_Del p.T3715Qfs*4 0.29 TCGA-A6-5665-01 7 151873535 151873535 G A KMT2C Silent p.N3001N 0.34 TCGA-A6-5665-01 7 1533395 1533395 G A INTS1 Missense_Mutation p.A688V 0.32 tolerated(0.2) benign(0.001) TCGA-A6-5665-01 7 156755801 156755801 G A NOM1 Missense_Mutation p.A615T 0.36 deleterious(0) possibly_damaging(0.657) TCGA-A6-5665-01 7 157208759 157208761 GAA - DNAJB6 In_Frame_Del p.K320del 0.31 TCGA-A6-5665-01 7 158734724 158734724 T C WDR60 Missense_Mutation p.S963P 0.16 deleterious(0.01) possibly_damaging(0.665) TCGA-A6-5665-01 7 1590583 1590583 C A TMEM184A Missense_Mutation p.Q85H 0.36 tolerated(0.11) benign(0.008) TCGA-A6-5665-01 7 1787389 1787390 - A ELFN1 3'UTR 0.32 TCGA-A6-5665-01 7 17979947 17979947 C A SNX13 5'UTR 0.29 TCGA-A6-5665-01 7 195555 195555 C T FAM20C Missense_Mutation p.P203S 0.26 tolerated(0.78) benign(0.08) TCGA-A6-5665-01 7 1976404 1976404 G A MAD1L1 Missense_Mutation p.R576C 0.40 deleterious(0.01) benign(0.02) TCGA-A6-5665-01 7 24758769 24758769 A - DFNA5 Frame_Shift_Del p.L158* 0.28 TCGA-A6-5665-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.57 TCGA-A6-5665-01 7 2987300 2987300 C T CARD11 Silent p.T43T 0.35 TCGA-A6-5665-01 7 32910160 32910160 A G KBTBD2 Silent p.D223D 0.38 TCGA-A6-5665-01 7 34094917 34094917 T C BMPER Splice_Site p.X309_splice 0.33 TCGA-A6-5665-01 7 36464324 36464324 T C ANLN Silent p.D894D 0.07 TCGA-A6-5665-01 7 39612281 39612281 A G YAE1D1 Silent p.V219V 0.32 TCGA-A6-5665-01 7 40173853 40173853 G - MPLKIP Frame_Shift_Del p.P105Qfs*48 0.38 TCGA-A6-5665-01 7 4272903 4272903 C A SDK1 Missense_Mutation p.D1948E 0.27 tolerated(0.14) benign(0.304) TCGA-A6-5665-01 7 43351430 43351430 A G HECW1 Silent p.R32R 0.41 TCGA-A6-5665-01 7 43917552 43917552 C T URGCP Missense_Mutation p.A504T 0.45 deleterious(0) benign(0.22) TCGA-A6-5665-01 7 44555477 44555477 G A NPC1L1 Missense_Mutation p.R1268C 0.32 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 7 44579188 44579188 G - NPC1L1 Frame_Shift_Del p.Q270Rfs*84 0.38 TCGA-A6-5665-01 7 44715774 44715774 G T OGDH Intron 0.27 TCGA-A6-5665-01 7 44796714 44796714 G - ZMIZ2 Frame_Shift_Del p.G113Afs*67 0.46 TCGA-A6-5665-01 7 44797627 44797627 C T ZMIZ2 Missense_Mutation p.R245C 0.45 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 7 45007535 45007535 C T MYO1G Missense_Mutation p.D533N 0.43 deleterious(0) possibly_damaging(0.762) TCGA-A6-5665-01 7 48092348 48092348 T C C7orf57 Silent p.N219N 0.35 TCGA-A6-5665-01 7 4856042 4856042 G A RADIL Missense_Mutation p.R595C 0.15 tolerated(0.21) benign(0.002) TCGA-A6-5665-01 7 4901395 4901395 G A PAPOLB Missense_Mutation p.P15L 0.37 tolerated(0.2) benign(0.008) TCGA-A6-5665-01 7 50672053 50672053 T C GRB10 Missense_Mutation p.I471V 0.25 tolerated(0.51) benign(0.002) TCGA-A6-5665-01 7 51097123 51097125 AAC - COBL In_Frame_Del p.L556del 0.28 TCGA-A6-5665-01 7 51287569 51287620 CTTCTGGTCACTGTGCACATGCAGAGTGGCAGCCTTTCCAGGAGGTGGGGGA GCTTCTGGTCACTGTGCACATGCAGAGTGGCGGCCTTTCCCGGGGGGGGGGGG COBL Frame_Shift_Ins p.H41Pfs*31 0.17 TCGA-A6-5665-01 7 5342487 5342487 T C SLC29A4 Missense_Mutation p.C504R 0.32 tolerated(0.07) benign(0.389) TCGA-A6-5665-01 7 54610396 54610396 A G VSTM2A 5'UTR 0.33 TCGA-A6-5665-01 7 5568853 5568853 T C ACTB Missense_Mutation p.H101R 0.31 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-A6-5665-01 7 57529149 57529149 G T ZNF716 Nonsense_Mutation p.E328* 0.34 TCGA-A6-5665-01 7 6189714 6189714 T C USP42 Silent p.G629G 0.35 TCGA-A6-5665-01 7 64388421 64388421 T C ZNF273 Missense_Mutation p.C239R 0.35 deleterious(0.04) possibly_damaging(0.794) TCGA-A6-5665-01 7 65705634 65705634 T C TPST1 Silent p.I74I 0.34 TCGA-A6-5665-01 7 70228263 70228263 G A AUTS2 Missense_Mutation p.A384T 0.27 tolerated(0.29) benign(0.001) TCGA-A6-5665-01 7 73085478 73085478 G A VPS37D Silent p.E176E 0.27 TCGA-A6-5665-01 7 73119251 73119251 G A STX1A Intron 0.50 TCGA-A6-5665-01 7 74564010 74564010 T C GTF2IRD2B Missense_Mutation p.M586T 0.27 tolerated(0.05) benign(0.024) TCGA-A6-5665-01 7 75932270 75932270 C A HSPB1 Missense_Mutation p.L81I 0.67 deleterious(0.01) possibly_damaging(0.643) TCGA-A6-5665-01 7 78131028 78131028 G A MAGI2 Silent p.Y277Y 0.33 TCGA-A6-5665-01 7 83277956 83277956 G A SEMA3E 5'UTR 0.31 TCGA-A6-5665-01 7 87170696 87170696 A T ABCB1 Missense_Mutation p.S766T 0.29 tolerated(0.07) benign(0.059) TCGA-A6-5665-01 7 89859271 89859271 G A STEAP2 Missense_Mutation p.G369D 0.33 tolerated(0.13) probably_damaging(0.979) TCGA-A6-5665-01 7 90547014 90547014 G - CDK14 Frame_Shift_Del p.E251Sfs*2 0.23 TCGA-A6-5665-01 7 90894536 90894536 G A FZD1 Missense_Mutation p.G114D 0.31 deleterious(0.03) possibly_damaging(0.749) TCGA-A6-5665-01 7 90894635 90894635 G A FZD1 Missense_Mutation p.G147D 0.29 deleterious(0) probably_damaging(0.995) TCGA-A6-5665-01 7 91631105 91631105 T C AKAP9 Missense_Mutation p.L625P 0.34 probably_damaging(1) TCGA-A6-5665-01 7 91632359 91632359 G C AKAP9 Missense_Mutation p.G1043A 0.33 benign(0.059) TCGA-A6-5665-01 7 92987813 92987813 T - CCDC132 3'UTR 0.22 TCGA-A6-5665-01 7 930640 930640 A G GET4 Missense_Mutation p.E181G 0.38 deleterious(0) probably_damaging(0.983) TCGA-A6-5665-01 7 938781 938781 T G ADAP1 Missense_Mutation p.T329P 0.29 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 7 94176469 94176469 T - CASD1 Frame_Shift_Del p.L567Wfs*23 0.24 TCGA-A6-5665-01 7 943834 943834 G - ADAP1 Frame_Shift_Del p.H193Tfs*8 0.37 TCGA-A6-5665-01 7 95019484 95019484 C T PON3 Silent p.G61G 0.33 TCGA-A6-5665-01 7 96318150 96318150 T - SHFM1 3'UTR 0.31 TCGA-A6-5665-01 7 97481458 97481459 - T ASNS 3'UTR 0.29 TCGA-A6-5665-01 7 97921852 97921852 G A BAIAP2L1 3'UTR 0.52 TCGA-A6-5665-01 7 99693416 99693416 C T MCM7 Missense_Mutation p.D526N 0.36 tolerated(0.36) benign(0.415) TCGA-A6-5665-01 7 99757579 99757580 - G GAL3ST4 Frame_Shift_Ins p.L478Pfs*17 0.30 TCGA-A6-5665-01 8 100733227 100733227 C T VPS13B Silent p.T2359T 0.38 TCGA-A6-5665-01 8 100990269 100990269 G A RGS22 Missense_Mutation p.P1132L 0.32 deleterious(0) possibly_damaging(0.745) TCGA-A6-5665-01 8 102678947 102678947 C T GRHL2 3'UTR 0.44 TCGA-A6-5665-01 8 104337481 104337482 CT - FZD6 Frame_Shift_Del p.L385Sfs*18 0.30 TCGA-A6-5665-01 8 10466194 10466194 C T RP1L1 Missense_Mutation p.G1805D 0.16 unknown(0) TCGA-A6-5665-01 8 105510112 105510112 A G LRP12 Missense_Mutation p.L223S 0.36 tolerated(0.41) possibly_damaging(0.86) TCGA-A6-5665-01 8 10555383 10555383 G A C8orf74 Silent p.T172T 0.44 TCGA-A6-5665-01 8 106814338 106814338 C T ZFPM2 Silent p.P676P 0.29 TCGA-A6-5665-01 8 110457440 110457440 T A PKHD1L1 Missense_Mutation p.V1781D 0.30 deleterious(0) probably_damaging(0.971) TCGA-A6-5665-01 8 113241029 113241029 A - CSMD3 Frame_Shift_Del p.F3640Lfs*61 0.29 TCGA-A6-5665-01 8 116616857 116616857 A G TRPS1 Missense_Mutation p.Y447H 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.579) TCGA-A6-5665-01 8 11994789 11994789 C G USP17L2 Missense_Mutation p.R494P 0.18 tolerated(0.31) benign(0) TCGA-A6-5665-01 8 11994791 11994791 G T USP17L2 Silent p.T493T 0.18 TCGA-A6-5665-01 8 11994792 11994792 G T USP17L2 Missense_Mutation p.T493N 0.17 tolerated(0.35) benign(0) TCGA-A6-5665-01 8 120744072 120744072 C - TAF2 3'UTR 0.30 TCGA-A6-5665-01 8 121262944 121262944 G A COL14A1 Silent p.V897V 0.34 TCGA-A6-5665-01 8 124027715 124027715 C - DERL1 Frame_Shift_Del p.G243Afs*31 0.31 TCGA-A6-5665-01 8 126163507 126163507 T C NSMCE2 Silent p.S84S 0.33 TCGA-A6-5665-01 8 12943126 12943126 A C DLC1 3'UTR 0.46 TCGA-A6-5665-01 8 13356725 13356726 - G DLC1 Frame_Shift_Ins p.N286Qfs*6 0.36 TCGA-A6-5665-01 8 13357145 13357145 A G DLC1 Missense_Mutation p.S146P 0.34 tolerated_low_confidence(0.05) benign(0.026) TCGA-A6-5665-01 8 13357146 13357146 G T DLC1 Silent p.G145G 0.34 TCGA-A6-5665-01 8 139151243 139151243 A G FAM135B Missense_Mutation p.L1296P 0.31 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 8 139767417 139767417 C T COL22A1 Missense_Mutation p.G672S 0.34 unknown(0) TCGA-A6-5665-01 8 141569615 141569615 C T AGO2 Silent p.A223A 0.36 TCGA-A6-5665-01 8 141716229 141716229 T C PTK2 Missense_Mutation p.N740D 0.33 deleterious(0.05) benign(0.199) TCGA-A6-5665-01 8 142238332 142238332 G A SLC45A4 Missense_Mutation p.R12C 0.34 deleterious_low_confidence(0) benign(0.035) TCGA-A6-5665-01 8 143921918 143921918 G A GML Missense_Mutation p.R22H 0.50 tolerated(0.12) benign(0.001) TCGA-A6-5665-01 8 143993354 143993354 G A CYP11B2 3'UTR 0.26 TCGA-A6-5665-01 8 144463994 144463994 G T RHPN1 Missense_Mutation p.E551D 0.33 deleterious(0.02) possibly_damaging(0.458) TCGA-A6-5665-01 8 144464768 144464769 - C RHPN1 Frame_Shift_Ins p.V656Sfs*93 0.55 TCGA-A6-5665-01 8 144809857 144809857 C T FAM83H Missense_Mutation p.G592S 0.67 tolerated(0.92) benign(0.009) TCGA-A6-5665-01 8 145140275 145140275 C T GPAA1 Silent p.G448G 0.21 TCGA-A6-5665-01 8 145559754 145559754 G A SCRT1 Silent p.R26R 0.37 TCGA-A6-5665-01 8 145668519 145668519 A G TONSL Splice_Site p.X150_splice 0.40 TCGA-A6-5665-01 8 145692650 145692650 G A KIFC2 Missense_Mutation p.R132Q 0.41 tolerated_low_confidence(0.08) benign(0.011) TCGA-A6-5665-01 8 145727027 145727027 C - PPP1R16A Frame_Shift_Del p.H445Tfs*15 0.38 TCGA-A6-5665-01 8 145998965 145998965 T C ZNF34 Missense_Mutation p.S457G 0.37 deleterious(0) possibly_damaging(0.788) TCGA-A6-5665-01 8 1728805 1728806 - T CLN8 3'UTR 0.22 TCGA-A6-5665-01 8 1952184 1952184 G T KBTBD11 3'UTR 0.39 TCGA-A6-5665-01 8 22938870 22938870 G T RP11-875O11.2 RNA 0.32 TCGA-A6-5665-01 8 23294495 23294495 T C ENTPD4 Silent p.L442L 0.39 TCGA-A6-5665-01 8 23429477 23429477 G A SLC25A37 3'UTR 0.27 TCGA-A6-5665-01 8 26492398 26492398 G A DPYSL2 Missense_Mutation p.A265T 0.34 tolerated(0.14) benign(0.061) TCGA-A6-5665-01 8 28218519 28218519 G A ZNF395 Silent p.A41A 0.29 TCGA-A6-5665-01 8 28286102 28286102 T C FBXO16 3'UTR 0.26 TCGA-A6-5665-01 8 28385132 28385132 C A FZD3 Silent p.A285A 0.31 TCGA-A6-5665-01 8 28932826 28932826 G A KIF13B Missense_Mutation p.P1498L 0.34 tolerated_low_confidence(0.75) benign(0.001) TCGA-A6-5665-01 8 30651438 30651438 T C PPP2CB Missense_Mutation p.M245V 0.36 deleterious(0.01) benign(0.063) TCGA-A6-5665-01 8 30704678 30704678 T C TEX15 Missense_Mutation p.H619R 0.31 tolerated(0.1) benign(0.408) TCGA-A6-5665-01 8 36793038 36793038 T C KCNU1 Missense_Mutation p.V1017A 0.36 deleterious(0) possibly_damaging(0.904) TCGA-A6-5665-01 8 37556324 37556324 A G ZNF703 3'UTR 0.50 TCGA-A6-5665-01 8 38835656 38835656 C A HTRA4 Missense_Mutation p.A319D 0.21 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 8 41503965 41503965 G A NKX6-3 3'UTR 0.33 TCGA-A6-5665-01 8 42022997 42022997 G A AP3M2 Missense_Mutation p.R241H 0.31 deleterious(0) probably_damaging(0.978) TCGA-A6-5665-01 8 42045531 42045531 C T PLAT Missense_Mutation p.C86Y 0.41 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 8 42259490 42259490 G A VDAC3 Missense_Mutation p.A171T 0.40 tolerated(0.07) benign(0.054) TCGA-A6-5665-01 8 42611485 42611485 A - CHRNA6 Frame_Shift_Del p.L286Cfs*26 0.32 TCGA-A6-5665-01 8 42828445 42828445 A - HOOK3 Frame_Shift_Del p.N380Tfs*13 0.26 TCGA-A6-5665-01 8 48694802 48694802 C T PRKDC Missense_Mutation p.E3803K 0.34 possibly_damaging(0.523) TCGA-A6-5665-01 8 48761938 48761938 A G PRKDC Splice_Site p.X2376_splice 0.33 TCGA-A6-5665-01 8 48817475 48817477 TTG - PRKDC In_Frame_Del p.N998del 0.35 TCGA-A6-5665-01 8 49647773 49647773 C T EFCAB1 5'UTR 0.30 TCGA-A6-5665-01 8 52321348 52321348 G A PXDNL Nonsense_Mutation p.R946* 0.34 TCGA-A6-5665-01 8 52323921 52323921 G A PXDNL Missense_Mutation p.R651C 0.30 deleterious(0.03) possibly_damaging(0.696) TCGA-A6-5665-01 8 52339231 52339231 G A PXDNL Missense_Mutation p.P538L 0.29 deleterious(0.03) probably_damaging(0.981) TCGA-A6-5665-01 8 53569255 53569255 T C RB1CC1 Missense_Mutation p.E1045G 0.36 deleterious_low_confidence(0.01) benign(0.309) TCGA-A6-5665-01 8 53580711 53580711 C T RB1CC1 Missense_Mutation p.R348H 0.42 tolerated(0.23) benign(0.002) TCGA-A6-5665-01 8 55541929 55541929 T - RP1 Frame_Shift_Del p.H1831Mfs*17 0.22 TCGA-A6-5665-01 8 56270330 56270330 C T XKR4 Missense_Mutation p.A300V 0.22 deleterious(0.03) benign(0.035) TCGA-A6-5665-01 8 57878775 57878775 A G IMPAD1 Silent p.T261T 0.32 TCGA-A6-5665-01 8 61729059 61729059 A G CHD7 Missense_Mutation p.E871G 0.34 probably_damaging(0.968) TCGA-A6-5665-01 8 65495671 65495671 C T BHLHE22 3'UTR 0.37 TCGA-A6-5665-01 8 65527685 65527685 G A CYP7B1 Missense_Mutation p.R319C 0.40 deleterious(0) probably_damaging(0.984) TCGA-A6-5665-01 8 66631578 66631578 C T PDE7A Missense_Mutation p.A466T 0.34 tolerated(0.48) benign(0) TCGA-A6-5665-01 8 6679485 6679485 C A XKR5 RNA 0.27 TCGA-A6-5665-01 8 6690393 6690393 T C GS1-24F4.2 5'Flank 0.42 TCGA-A6-5665-01 8 67341608 67341608 C T RRS1 Missense_Mutation p.T81M 0.53 deleterious(0) probably_damaging(0.973) TCGA-A6-5665-01 8 67793205 67793205 A G MCMDC2 Silent p.S277S 0.33 TCGA-A6-5665-01 8 68140284 68140284 T - ARFGEF1 Frame_Shift_Del p.I1169* 0.27 TCGA-A6-5665-01 8 71487027 71487027 A - TRAM1 3'UTR 0.20 TCGA-A6-5665-01 8 72268760 72268761 - A EYA1 Intron 0.28 TCGA-A6-5665-01 8 75276411 75276411 G A GDAP1 Missense_Mutation p.V296I 0.36 tolerated(0.65) possibly_damaging(0.474) TCGA-A6-5665-01 8 75737672 75737672 C T PI15 Missense_Mutation p.S63L 0.31 tolerated(0.05) benign(0.349) TCGA-A6-5665-01 8 77617727 77617727 A G ZFHX4 Silent p.E468E 0.41 TCGA-A6-5665-01 8 77776202 77776202 G A ZFHX4 Missense_Mutation p.A3418T 0.44 benign(0.004) TCGA-A6-5665-01 8 79645825 79645825 G A IL7 3'UTR 0.29 TCGA-A6-5665-01 8 82626245 82626245 G A ZFAND1 Nonsense_Mutation p.R130* 0.32 TCGA-A6-5665-01 8 86035692 86035692 A - LRRCC1 Frame_Shift_Del p.R327Efs*5 0.25 TCGA-A6-5665-01 8 86129615 86129615 C A C8orf59 Missense_Mutation p.K38N 0.27 deleterious(0.01) possibly_damaging(0.843) TCGA-A6-5665-01 8 86250523 86250524 - C CA1 Frame_Shift_Ins p.H65Afs*8 0.32 TCGA-A6-5665-01 8 88298810 88298810 G A CNBD1 Missense_Mutation p.R318H 0.27 tolerated(0.58) benign(0.002) TCGA-A6-5665-01 8 92097012 92097012 A T OTUD6B Silent p.V296V 0.39 TCGA-A6-5665-01 8 95444186 95444186 A G RAD54B Intron 0.16 TCGA-A6-5665-01 8 95942749 95942749 G T TP53INP1 Silent p.G227G 0.39 TCGA-A6-5665-01 8 96070239 96070239 C T NDUFAF6 3'UTR 0.27 TCGA-A6-5665-01 8 96166520 96166520 A - PLEKHF2 Frame_Shift_Del p.N84Mfs*13 0.27 TCGA-A6-5665-01 8 98041685 98041685 G A CPQ Missense_Mutation p.G339D 0.35 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 8 99146703 99146703 T C POP1 Missense_Mutation p.L276P 0.33 tolerated(0.35) benign(0.05) TCGA-A6-5665-01 8 99440332 99440332 G A KCNS2 Missense_Mutation p.R42H 0.50 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 9 100204015 100204015 A G TDRD7 Missense_Mutation p.Q238R 0.29 deleterious(0) probably_damaging(0.993) TCGA-A6-5665-01 9 101797335 101797335 A - COL15A1 Frame_Shift_Del p.K708Rfs*44 0.22 TCGA-A6-5665-01 9 104123004 104123004 C A BAAT 3'UTR 0.62 TCGA-A6-5665-01 9 104238191 104238191 C T TMEM246 Missense_Mutation p.R395Q 0.37 tolerated(0.06) benign(0.005) TCGA-A6-5665-01 9 107380261 107380261 G T OR13C9 Silent p.T75T 0.32 TCGA-A6-5665-01 9 109689060 109689060 C T ZNF462 Missense_Mutation p.A956V 0.24 probably_damaging(0.994) TCGA-A6-5665-01 9 109690005 109690005 C T ZNF462 Missense_Mutation p.S1271L 0.45 probably_damaging(0.996) TCGA-A6-5665-01 9 109691324 109691324 G T ZNF462 Missense_Mutation p.G1711C 0.30 probably_damaging(1) TCGA-A6-5665-01 9 113148217 113148217 G A SVEP1 Missense_Mutation p.P3400S 0.39 benign(0.158) TCGA-A6-5665-01 9 113459624 113459624 T C MUSK Missense_Mutation p.V169A 0.38 deleterious(0.01) benign(0.425) TCGA-A6-5665-01 9 114090026 114090026 C T OR2K2 Missense_Mutation p.A230T 0.36 tolerated(0.14) benign(0.034) TCGA-A6-5665-01 9 114986067 114986067 A G PTBP3 3'UTR 0.40 TCGA-A6-5665-01 9 115216297 115216297 T C HSDL2 Silent p.A290A 0.37 TCGA-A6-5665-01 9 116731434 116731434 C T ZNF618 Missense_Mutation p.A24V 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-A6-5665-01 9 119124974 119124974 T C PAPPA Missense_Mutation p.L1484P 0.28 deleterious(0.02) possibly_damaging(0.766) TCGA-A6-5665-01 9 119491325 119491325 G A ASTN2 Missense_Mutation p.R807W 0.44 deleterious(0) unknown(0) TCGA-A6-5665-01 9 119738981 119738981 C A ASTN2 Nonsense_Mutation p.G508* 0.37 TCGA-A6-5665-01 9 119770383 119770383 C T ASTN2 Missense_Mutation p.D476N 0.36 deleterious(0) unknown(0) TCGA-A6-5665-01 9 123290085 123290085 T - CDK5RAP2 Frame_Shift_Del p.K333Rfs*76 0.29 TCGA-A6-5665-01 9 123538437 123538437 T G FBXW2 Missense_Mutation p.K251N 0.33 deleterious(0.04) possibly_damaging(0.727) TCGA-A6-5665-01 9 124751971 124751971 C A TTLL11 Nonsense_Mutation p.G348* 0.24 TCGA-A6-5665-01 9 124929179 124929179 C T MORN5 Silent p.N60N 0.22 TCGA-A6-5665-01 9 125438095 125438095 C A OR1L3 Silent p.P229P 0.05 TCGA-A6-5665-01 9 125438345 125438345 A G OR1L3 Missense_Mutation p.R313G 0.43 tolerated(0.13) benign(0.006) TCGA-A6-5665-01 9 125627824 125627824 T C RC3H2 Missense_Mutation p.I480V 0.26 tolerated(0.29) possibly_damaging(0.558) TCGA-A6-5665-01 9 125895239 125895239 G A STRBP Silent p.G594G 0.29 TCGA-A6-5665-01 9 126776292 126776292 G A LHX2 Missense_Mutation p.G58D 0.36 tolerated(0.12) possibly_damaging(0.697) TCGA-A6-5665-01 9 127996037 127996037 T C RABEPK Silent p.C299C 0.37 TCGA-A6-5665-01 9 129596349 129596349 A - ZBTB43 3'UTR 0.26 TCGA-A6-5665-01 9 130155621 130155621 T C GARNL3 3'UTR 0.31 TCGA-A6-5665-01 9 130634196 130634196 C T AK1 Missense_Mutation p.R77Q 0.27 deleterious(0.04) possibly_damaging(0.56) TCGA-A6-5665-01 9 130677090 130677090 C T ST6GALNAC4 Missense_Mutation p.V15M 0.43 benign(0.009) TCGA-A6-5665-01 9 130829375 130829375 G A NAIF1 Silent p.A2A 0.33 TCGA-A6-5665-01 9 130928547 130928547 T - CIZ1 Frame_Shift_Del p.T876Hfs*5 0.43 TCGA-A6-5665-01 9 131243901 131243901 C T ODF2 Missense_Mutation p.R296W 0.42 deleterious(0) benign(0.363) TCGA-A6-5665-01 9 131302102 131302102 C A GLE1 Intron 0.45 TCGA-A6-5665-01 9 131397114 131397114 G A WDR34 Silent p.G356G 0.31 TCGA-A6-5665-01 9 131777085 131777085 G A SH3GLB2 Missense_Mutation p.R145C 0.20 deleterious(0) probably_damaging(0.992) TCGA-A6-5665-01 9 132580872 132580872 T C TOR1A Silent p.G225G 0.33 TCGA-A6-5665-01 9 133779578 133779578 T C FIBCD1 Missense_Mutation p.N420S 0.30 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 9 133927940 133927940 C - LAMC3 Frame_Shift_Del p.D568Tfs*8 0.38 TCGA-A6-5665-01 9 133967201 133967201 T A LAMC3 3'UTR 0.30 TCGA-A6-5665-01 9 135205877 135205877 A G SETX Missense_Mutation p.W370R 0.33 deleterious(0.04) benign(0.216) TCGA-A6-5665-01 9 135765381 135765381 G - C9orf9 3'UTR 0.30 TCGA-A6-5665-01 9 135957955 135957955 G A CELP RNA 0.33 TCGA-A6-5665-01 9 136217735 136217735 T C RPL7A Intron 0.32 TCGA-A6-5665-01 9 136230468 136230468 G A SURF4 Silent p.Y237Y 0.35 TCGA-A6-5665-01 9 138378160 138378160 G A PPP1R26 Missense_Mutation p.V602M 0.31 deleterious(0.03) benign(0.066) TCGA-A6-5665-01 9 139232370 139232370 A G GPSM1 Missense_Mutation p.N257S 0.31 deleterious(0) probably_damaging(0.983) TCGA-A6-5665-01 9 139250155 139250155 C - GPSM1 Frame_Shift_Del p.P491Rfs*12 0.36 TCGA-A6-5665-01 9 139391555 139391555 G A NOTCH1 Silent p.D2212D 0.38 TCGA-A6-5665-01 9 139391768 139391768 C T NOTCH1 Silent p.S2141S 0.34 TCGA-A6-5665-01 9 139739008 139739008 C T C9orf172 Missense_Mutation p.R48C 0.43 deleterious(0) possibly_damaging(0.835) TCGA-A6-5665-01 9 139740503 139740503 C T C9orf172 Missense_Mutation p.P546L 0.27 tolerated(0.3) benign(0.154) TCGA-A6-5665-01 9 139906727 139906727 C T ABCA2 Silent p.P1763P 0.38 TCGA-A6-5665-01 9 139906958 139906958 G A ABCA2 Silent p.I1722I 0.33 TCGA-A6-5665-01 9 140343780 140343780 G A NSMF 3'UTR 0.36 TCGA-A6-5665-01 9 140997238 140997238 C T CACNA1B Silent p.C1766C 0.27 TCGA-A6-5665-01 9 15171910 15171910 T - TTC39B 3'UTR 0.23 TCGA-A6-5665-01 9 15444608 15444608 T C SNAPC3 Silent p.H162H 0.30 TCGA-A6-5665-01 9 17502889 17502889 A G CNTLN 3'UTR 0.12 TCGA-A6-5665-01 9 19032874 19032874 G A FAM154A Silent p.S11S 0.27 TCGA-A6-5665-01 9 20363312 20363312 T C MLLT3 Intron 0.25 TCGA-A6-5665-01 9 21006858 21006858 A G PTPLAD2 3'UTR 0.24 TCGA-A6-5665-01 9 21166246 21166246 G A IFNA21 Silent p.C122C 0.37 TCGA-A6-5665-01 9 214621 214621 C T C9orf66 Missense_Mutation p.R259H 0.26 tolerated_low_confidence(0.07) benign(0) TCGA-A6-5665-01 9 2158722 2158723 - T SMARCA2 Intron 0.27 TCGA-A6-5665-01 9 21968147 21968147 G A CDKN2A 3'UTR 0.30 TCGA-A6-5665-01 9 21971058 21971058 G A CDKN2A Silent p.A100A 0.38 TCGA-A6-5665-01 9 2643643 2643643 G A VLDLR Missense_Mutation p.R279Q 0.36 tolerated(0.07) benign(0.001) TCGA-A6-5665-01 9 27294375 27294375 A G EQTN Silent p.N76N 0.39 TCGA-A6-5665-01 9 32633962 32633962 G A TAF1L Missense_Mutation p.A539V 0.27 tolerated(0.29) benign(0.018) TCGA-A6-5665-01 9 33675673 33675673 T G PTENP1 RNA 0.30 TCGA-A6-5665-01 9 34971522 34971522 G A KIAA1045 Missense_Mutation p.R76H 0.23 deleterious(0.01) possibly_damaging(0.839) TCGA-A6-5665-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.31 TCGA-A6-5665-01 9 35740330 35740330 C A GBA2 Missense_Mutation p.G387C 0.37 deleterious(0.04) probably_damaging(0.932) TCGA-A6-5665-01 9 35808787 35808787 C T NPR2 Missense_Mutation p.P975S 0.36 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 9 35870230 35870230 T G OR13J1 Missense_Mutation p.T57P 0.29 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 9 36219882 36219882 T C GNE Missense_Mutation p.Y621C 0.39 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-A6-5665-01 9 36966596 36966596 G A PAX5 Nonsense_Mutation p.Q244* 0.36 TCGA-A6-5665-01 9 67785214 67785214 A C FAM27E3 3'UTR 0.19 TCGA-A6-5665-01 9 69200371 69200371 A G FOXD4L6 Silent p.R414R 0.32 TCGA-A6-5665-01 9 71789267 71789267 C A TJP2 5'UTR 0.25 TCGA-A6-5665-01 9 72962620 72962620 A - SMC5 Frame_Shift_Del p.N920Tfs*5 0.25 TCGA-A6-5665-01 9 73151678 73151678 C A TRPM3 Missense_Mutation p.A1439S 0.39 tolerated_low_confidence(0.88) benign(0.047) TCGA-A6-5665-01 9 74842916 74842916 C T GDA Nonsense_Mutation p.R294* 0.36 TCGA-A6-5665-01 9 77416893 77416893 G T TRPM6 Missense_Mutation p.L644I 0.27 deleterious(0.04) probably_damaging(0.947) TCGA-A6-5665-01 9 77755830 77755830 A - OSTF1 Frame_Shift_Del p.K191Rfs*11 0.28 TCGA-A6-5665-01 9 80336081 80336081 C T GNAQ 3'UTR 0.40 TCGA-A6-5665-01 9 80412493 80412493 C T GNAQ Missense_Mutation p.R183Q 0.30 deleterious(0.03) probably_damaging(1) TCGA-A6-5665-01 9 8518097 8518097 T C PTPRD Missense_Mutation p.T432A 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-A6-5665-01 9 86586817 86586817 T A HNRNPK Silent p.P311P 0.22 TCGA-A6-5665-01 9 87338573 87338573 T A NTRK2 Missense_Mutation p.D223E 0.27 tolerated(0.81) benign(0.001) TCGA-A6-5665-01 9 88627977 88627977 T G NAA35 Missense_Mutation p.I436S 0.39 deleterious(0.01) possibly_damaging(0.737) TCGA-A6-5665-01 9 90388080 90388080 C T CTSL3P RNA 0.32 TCGA-A6-5665-01 9 95236939 95236939 A G ASPN Missense_Mutation p.C81R 0.39 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 X 100357302 100357302 A - CENPI Frame_Shift_Del p.K90Nfs*3 0.32 TCGA-A6-5665-01 X 100608272 100608272 A C BTK Silent p.T606T 0.34 TCGA-A6-5665-01 X 101139341 101139341 T C ZMAT1 Missense_Mutation p.E353G 0.35 deleterious(0.04) probably_damaging(0.972) TCGA-A6-5665-01 X 101970646 101970646 A G GPRASP2 Silent p.G283G 0.33 TCGA-A6-5665-01 X 102337097 102337097 C A NXF3 Intron 0.41 TCGA-A6-5665-01 X 102471980 102471981 - T BEX4 3'UTR 0.27 TCGA-A6-5665-01 X 107977821 107977821 C T IRS4 Missense_Mutation p.G585D 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-A6-5665-01 X 108631830 108631830 C T GUCY2F Silent p.R948R 0.32 TCGA-A6-5665-01 X 110490649 110490650 - A CAPN6 Frame_Shift_Ins p.D564* 0.27 TCGA-A6-5665-01 X 11157273 11157273 G A ARHGAP6 Missense_Mutation p.R879W 0.54 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-A6-5665-01 X 114238645 114238645 A G IL13RA2 Nonstop_Mutation p.*381Rext*23 0.33 TCGA-A6-5665-01 X 114424301 114424301 C T RBMXL3 Silent p.P99P 0.39 TCGA-A6-5665-01 X 114536677 114536677 G A LUZP4 Missense_Mutation p.R71H 0.37 tolerated(0.72) benign(0) TCGA-A6-5665-01 X 117033340 117033340 G T KLHL13 Missense_Mutation p.T503N 0.31 tolerated(0.48) benign(0.373) TCGA-A6-5665-01 X 117880927 117880927 C T IL13RA1 Missense_Mutation p.P80L 0.32 tolerated(0.15) benign(0.019) TCGA-A6-5665-01 X 11790307 11790307 C - MSL3 Frame_Shift_Del p.P440Qfs*22 0.23 TCGA-A6-5665-01 X 118145809 118145809 A G LONRF3 Missense_Mutation p.T562A 0.30 tolerated(0.23) probably_damaging(0.999) TCGA-A6-5665-01 X 119445209 119445209 C T TMEM255A 5'UTR 0.29 TCGA-A6-5665-01 X 119742158 119742158 C T MCTS1 Missense_Mutation p.P115L 0.32 deleterious(0.01) probably_damaging(0.951) TCGA-A6-5665-01 X 119760006 119760006 A G C1GALT1C1 3'UTR 0.21 TCGA-A6-5665-01 X 125298775 125298775 C T DCAF12L2 Missense_Mutation p.R378H 0.29 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 X 125299782 125299782 C A DCAF12L2 Missense_Mutation p.Q42H 0.39 tolerated(0.19) benign(0.017) TCGA-A6-5665-01 X 125685947 125685947 G A DCAF12L1 Silent p.G215G 0.46 TCGA-A6-5665-01 X 12735777 12735777 C - FRMPD4 Frame_Shift_Del p.A947Qfs*130 0.38 TCGA-A6-5665-01 X 128781742 128781742 G - APLN 3'UTR 0.33 TCGA-A6-5665-01 X 129148638 129148638 C A BCORL1 Silent p.R630R 0.29 TCGA-A6-5665-01 X 129201028 129201028 C - ELF4 Frame_Shift_Del p.A554Pfs*13 0.34 TCGA-A6-5665-01 X 129361654 129361654 A G ZNF280C Splice_Site p.X416_splice 0.32 TCGA-A6-5665-01 X 130410933 130410933 G T IGSF1 Missense_Mutation p.P868H 0.46 deleterious(0) possibly_damaging(0.905) TCGA-A6-5665-01 X 131763096 131763096 G A HS6ST2 Nonsense_Mutation p.R365* 0.46 TCGA-A6-5665-01 X 134185928 134185928 G A FAM127B Missense_Mutation p.R71C 0.31 deleterious(0) probably_damaging(0.991) TCGA-A6-5665-01 X 134713925 134713925 G T DDX26B Nonsense_Mutation p.G741* 0.36 TCGA-A6-5665-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.29 TCGA-A6-5665-01 X 135426885 135426886 - A GPR112 Frame_Shift_Ins p.T343Nfs*16 0.31 TCGA-A6-5665-01 X 135488053 135488054 - G GPR112 Frame_Shift_Ins p.F2955Vfs*21 0.25 TCGA-A6-5665-01 X 137717645 137717645 C A FGF13 Missense_Mutation p.A202S 0.32 tolerated(0.46) benign(0.338) TCGA-A6-5665-01 X 13778510 13778510 G A OFD1 Missense_Mutation p.R644H 0.41 tolerated(0.49) benign(0.023) TCGA-A6-5665-01 X 138679662 138679662 G A MCF2 Missense_Mutation p.S747L 0.04 deleterious(0) benign(0.41) TCGA-A6-5665-01 X 139587069 139587069 C T SOX3 Missense_Mutation p.V53M 0.41 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-A6-5665-01 X 14592500 14592500 G T GLRA2 Missense_Mutation p.G83V 0.39 deleterious(0) probably_damaging(0.997) TCGA-A6-5665-01 X 146340370 146340370 C A MIR509-1 3'Flank 0.31 TCGA-A6-5665-01 X 1506236 1506236 G A SLC25A6 Silent p.G225G 0.40 TCGA-A6-5665-01 X 150906984 150906984 G A CNGA2 Missense_Mutation p.S10N 0.30 tolerated_low_confidence(0.3) benign(0) TCGA-A6-5665-01 X 152089273 152089273 G T ZNF185 Missense_Mutation p.A212S 0.35 tolerated(0.08) possibly_damaging(0.821) TCGA-A6-5665-01 X 152830536 152830536 G A ATP2B3 Missense_Mutation p.R1106Q 0.39 deleterious(0.04) possibly_damaging(0.899) TCGA-A6-5665-01 X 153036050 153036050 G A PLXNB3 Missense_Mutation p.G678R 0.34 tolerated(0.41) benign(0.021) TCGA-A6-5665-01 X 153038806 153038806 C T PLXNB3 Missense_Mutation p.R1033C 0.27 deleterious(0.04) possibly_damaging(0.663) TCGA-A6-5665-01 X 153039742 153039742 C T PLXNB3 Silent p.C1230C 0.33 TCGA-A6-5665-01 X 153134319 153134319 T C L1CAM Silent p.G452G 0.31 TCGA-A6-5665-01 X 153185114 153185114 G A ARHGAP4 Silent p.A236A 0.37 TCGA-A6-5665-01 X 153187162 153187162 G A ARHGAP4 Silent p.R56R 0.35 TCGA-A6-5665-01 X 153221676 153221676 G A HCFC1 Missense_Mutation p.A941V 0.39 deleterious_low_confidence(0.05) probably_damaging(0.986) TCGA-A6-5665-01 X 153229685 153229685 C G HCFC1 Silent p.G131G 0.36 TCGA-A6-5665-01 X 153247831 153247831 G A TMEM187 Silent p.T106T 0.33 TCGA-A6-5665-01 X 153461515 153461515 C T OPN1MW Missense_Mutation p.S360L 0.15 deleterious(0.01) unknown(0) TCGA-A6-5665-01 X 15349876 15349876 G A PIGA Silent p.C59C 0.36 TCGA-A6-5665-01 X 153556026 153556026 G A TKTL1 Silent p.S497S 0.30 TCGA-A6-5665-01 X 153588810 153588810 C A FLNA Missense_Mutation p.G1118V 0.31 deleterious(0.03) probably_damaging(1) TCGA-A6-5665-01 X 153688730 153688730 G A PLXNA3 Silent p.G69G 0.40 TCGA-A6-5665-01 X 153944504 153944504 C T GAB3 Missense_Mutation p.R58Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 X 154158778 154158778 A T F8 Missense_Mutation p.V1096D 0.04 tolerated(0.11) benign(0.013) TCGA-A6-5665-01 X 155009248 155009248 A G SPRY3 3'UTR 0.36 TCGA-A6-5665-01 X 155237214 155237214 T C IL9R Missense_Mutation p.V305A 0.09 deleterious(0) probably_damaging(0.983) TCGA-A6-5665-01 X 17818831 17818831 A T RAI2 Missense_Mutation p.S434T 0.39 tolerated(0.08) unknown(0) TCGA-A6-5665-01 X 19013107 19013107 T G GPR64 Missense_Mutation p.S926R 0.30 deleterious(0) probably_damaging(0.999) TCGA-A6-5665-01 X 19362051 19362051 A G PDHA1 5'UTR 0.28 TCGA-A6-5665-01 X 19362130 19362130 G A PDHA1 5'UTR 0.28 TCGA-A6-5665-01 X 19379144 19379144 A T PDHA1 3'UTR 0.33 TCGA-A6-5665-01 X 20159881 20159881 C T EIF1AX 5'UTR 0.32 TCGA-A6-5665-01 X 21675046 21675046 C - KLHL34 Frame_Shift_Del p.R288Afs*7 0.46 TCGA-A6-5665-01 X 21675868 21675868 G A KLHL34 Silent p.G13G 0.52 TCGA-A6-5665-01 X 23019367 23019367 G A DDX53 Missense_Mutation p.R398H 0.07 deleterious(0.02) benign(0.082) TCGA-A6-5665-01 X 23748642 23748642 A G ACOT9 Splice_Site p.X134_splice 0.35 TCGA-A6-5665-01 X 24005882 24005882 A - KLHL15 3'UTR 0.37 TCGA-A6-5665-01 X 24006560 24006560 G A KLHL15 Silent p.T431T 0.32 TCGA-A6-5665-01 X 24580362 24580362 G A PCYT1B 3'UTR 0.33 TCGA-A6-5665-01 X 27766245 27766245 C A DCAF8L2 Missense_Mutation p.F411L 0.37 tolerated(0.14) possibly_damaging(0.749) TCGA-A6-5665-01 X 2864132 2864132 C T ARSE Missense_Mutation p.V300I 0.30 deleterious(0.04) possibly_damaging(0.506) TCGA-A6-5665-01 X 2873479 2873479 C T ARSE Silent p.T95T 0.33 TCGA-A6-5665-01 X 34148614 34148614 G A FAM47A Silent p.C594C 0.32 TCGA-A6-5665-01 X 34960930 34960930 C T FAM47B 5'UTR 0.43 TCGA-A6-5665-01 X 34960933 34960933 A G FAM47B 5'UTR 0.39 TCGA-A6-5665-01 X 37027077 37027077 C - FAM47C Frame_Shift_Del p.P200Rfs*625 0.42 TCGA-A6-5665-01 X 37027911 37027911 G A FAM47C Silent p.P476P 0.41 TCGA-A6-5665-01 X 37300915 37300915 C T PRRG1 Intron 0.56 TCGA-A6-5665-01 X 38665639 38665639 T - MID1IP1 3'UTR 0.31 TCGA-A6-5665-01 X 39933195 39933195 G T BCOR Missense_Mutation p.H468Q 0.38 tolerated(0.17) probably_damaging(0.995) TCGA-A6-5665-01 X 41025392 41025392 A C USP9X Missense_Mutation p.E751D 0.29 tolerated(0.08) probably_damaging(0.952) TCGA-A6-5665-01 X 43603842 43603842 T C MAOA 3'UTR 0.37 TCGA-A6-5665-01 X 44703738 44703738 C T DUSP21 Silent p.Y120Y 0.36 TCGA-A6-5665-01 X 46539164 46539165 - A SLC9A7 Frame_Shift_Ins p.N185Qfs*62 0.27 TCGA-A6-5665-01 X 47003918 47003918 G A NDUFB11 Missense_Mutation p.P54L 0.35 tolerated(0.28) benign(0.001) TCGA-A6-5665-01 X 47086592 47086592 C T CDK16 Silent p.D492D 0.36 TCGA-A6-5665-01 X 47444586 47444586 C T TIMP1 Intron 0.33 TCGA-A6-5665-01 X 47776175 47776175 A G ZNF81 3'UTR 0.31 TCGA-A6-5665-01 X 48270305 48270305 G T SSX4B Silent p.A24A 0.11 TCGA-A6-5665-01 X 48558904 48558904 G - SUV39H1 Frame_Shift_Del p.A198Rfs*140 0.38 TCGA-A6-5665-01 X 48820019 48820019 G A KCND1 Silent p.C589C 0.40 TCGA-A6-5665-01 X 49021090 49021090 G A MAGIX Missense_Mutation p.R81H 0.36 tolerated(0.11) benign(0.041) TCGA-A6-5665-01 X 49028346 49028346 C A PLP2 5'UTR 0.36 TCGA-A6-5665-01 X 49646648 49646648 A G USP27X 3'UTR 0.29 TCGA-A6-5665-01 X 49646957 49646957 A G USP27X 3'UTR 0.19 TCGA-A6-5665-01 X 49958929 49958929 G A AKAP4 Silent p.G145G 0.29 TCGA-A6-5665-01 X 50213307 50213307 T G DGKK RNA 0.27 TCGA-A6-5665-01 X 53172243 53172243 G A AL139396.1 RNA 0.51 TCGA-A6-5665-01 X 53263630 53263630 C - IQSEC2 Frame_Shift_Del p.G1413Afs*82 0.56 TCGA-A6-5665-01 X 53279909 53279909 G A IQSEC2 Missense_Mutation p.R617C 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-5665-01 X 53310692 53310692 G - IQSEC2 Intron 0.39 TCGA-A6-5665-01 X 53565307 53565307 A G HUWE1 Missense_Mutation p.V3996A 0.28 unknown(0) TCGA-A6-5665-01 X 53573497 53573497 T C HUWE1 Silent p.L3605L 0.28 TCGA-A6-5665-01 X 53573547 53573547 T C HUWE1 Missense_Mutation p.T3589A 0.35 unknown(0) TCGA-A6-5665-01 X 53616678 53616678 C T HUWE1 Silent p.P1430P 0.39 TCGA-A6-5665-01 X 54321220 54321220 G A WNK3 Missense_Mutation p.R487W 0.37 deleterious(0) probably_damaging(1) TCGA-A6-5665-01 X 54359979 54359979 T - WNK3 Frame_Shift_Del p.N43Tfs*11 0.27 TCGA-A6-5665-01 X 55028040 55028040 C T APEX2 Silent p.S73S 0.38 TCGA-A6-5665-01 X 57623823 57623823 T - ZXDB 3'UTR 0.14 TCGA-A6-5665-01 X 5821379 5821379 T C NLGN4X Missense_Mutation p.H447R 0.33 tolerated(0.1) probably_damaging(0.982) TCGA-A6-5665-01 X 591853 591853 A G SHOX Missense_Mutation p.H74R 0.33 tolerated(0.54) benign(0.051) TCGA-A6-5665-01 X 63574685 63574685 G A MTMR8 Missense_Mutation p.T147I 0.30 tolerated(0.2) benign(0.019) TCGA-A6-5665-01 X 69502652 69502652 G A RAB41 Missense_Mutation p.A61T 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-A6-5665-01 X 70338703 70338703 G T MED12 Missense_Mutation p.E33D 0.32 possibly_damaging(0.776) TCGA-A6-5665-01 X 70356162 70356162 C T MED12 Missense_Mutation p.S1686L 0.06 possibly_damaging(0.7) TCGA-A6-5665-01 X 70367616 70367616 G A NLGN3 Missense_Mutation p.G6D 0.29 tolerated_low_confidence(0.21) benign(0.008) TCGA-A6-5665-01 X 70387487 70387487 A G NLGN3 Missense_Mutation p.M514V 0.40 tolerated(0.3) possibly_damaging(0.666) TCGA-A6-5665-01 X 70464161 70464161 G A ZMYM3 Missense_Mutation p.R1091C 0.35 deleterious(0) probably_damaging(0.993) TCGA-A6-5665-01 X 70613304 70613304 C T TAF1 Missense_Mutation p.R1089C 0.36 deleterious(0) probably_damaging(0.927) TCGA-A6-5665-01 X 70832288 70832288 G A ACRC Missense_Mutation p.A612T 0.37 unknown(0) TCGA-A6-5665-01 X 70836822 70836822 C T CXCR3 Missense_Mutation p.R214H 0.36 tolerated(0.27) probably_damaging(0.921) TCGA-A6-5665-01 X 71425056 71425056 A G ERCC6L Silent p.G1187G 0.34 TCGA-A6-5665-01 X 71427621 71427621 G A ERCC6L Silent p.D332D 0.27 TCGA-A6-5665-01 X 72434104 72434104 T - NAP1L2 Frame_Shift_Del p.G76Vfs*21 0.30 TCGA-A6-5665-01 X 7252077 7252077 G A STS Missense_Mutation p.R436H 0.30 tolerated(1) benign(0.009) TCGA-A6-5665-01 X 74523309 74523309 C A UPRT Missense_Mutation p.P298H 0.07 deleterious(0) probably_damaging(0.998) TCGA-A6-5665-01 X 75648746 75648746 G A MAGEE1 Silent p.P141P 0.47 TCGA-A6-5665-01 X 76919038 76919038 T - ATRX Frame_Shift_Del p.N1318Ifs*28 0.28 TCGA-A6-5665-01 X 77528547 77528547 C A CYSLTR1 Nonsense_Mutation p.G233* 0.29 TCGA-A6-5665-01 X 78217060 78217060 C T P2RY10 3'UTR 0.32 TCGA-A6-5665-01 X 78217136 78217136 A - P2RY10 3'UTR 0.27 TCGA-A6-5665-01 X 79931883 79931883 T G BRWD3 3'UTR 0.28 TCGA-A6-5665-01 X 83128184 83128184 T G CYLC1 Missense_Mutation p.N156K 0.32 tolerated(0.21) possibly_damaging(0.607) TCGA-A6-5665-01 X 90692862 90692863 AG - PABPC5 3'UTR 0.24 TCGA-A6-5665-01 X 92928187 92928187 G T NAP1L3 Missense_Mutation p.S39R 0.11 deleterious(0.01) probably_damaging(0.944) TCGA-A6-5665-01 X 92966191 92966192 - A FAM133A 3'UTR 0.17 TCGA-A6-5665-01 X 99901343 99901343 A G SRPX2 Silent p.R8R 0.43 TCGA-A6-5666-01 10 123353316 123353316 G A FGFR2 Missense_Mutation p.R6C 0.44 tolerated_low_confidence(0.18) possibly_damaging(0.562) TCGA-A6-5666-01 10 125805593 125805593 G A CHST15 Missense_Mutation p.R46C 0.31 tolerated_low_confidence(0.07) benign(0.001) TCGA-A6-5666-01 10 25887078 25887078 G T GPR158 Missense_Mutation p.E841D 0.30 tolerated(0.6) benign(0.006) TCGA-A6-5666-01 10 294523 294523 G A ZMYND11 Missense_Mutation p.R492H 0.56 tolerated(0.13) probably_damaging(0.997) TCGA-A6-5666-01 10 931610 931611 CT - LARP4B Frame_Shift_Del p.R17Sfs*35 0.34 TCGA-A6-5666-01 10 98762651 98762651 C T SLIT1 Missense_Mutation p.E1322K 0.57 tolerated(0.42) possibly_damaging(0.733) TCGA-A6-5666-01 11 113661000 113661000 G A ATF4P4 RNA 0.34 TCGA-A6-5666-01 11 113661165 113661165 G A ATF4P4 RNA 0.45 TCGA-A6-5666-01 11 118348807 118348807 C T KMT2A Missense_Mutation p.R1154W 0.42 probably_damaging(0.998) TCGA-A6-5666-01 11 4790670 4790670 G T OR51F1 Missense_Mutation p.P160T 0.45 deleterious(0.01) possibly_damaging(0.562) TCGA-A6-5666-01 11 5291214 5291214 C T HBE1 5'UTR 0.31 TCGA-A6-5666-01 11 65360504 65360504 G - KCNK7 Frame_Shift_Del p.P299Qfs*? 0.19 TCGA-A6-5666-01 11 65637375 65637375 C T EFEMP2 Missense_Mutation p.R227H 0.37 tolerated(0.08) benign(0.315) TCGA-A6-5666-01 11 65789001 65789001 C A CATSPER1 Missense_Mutation p.A553S 0.39 deleterious(0.03) possibly_damaging(0.812) TCGA-A6-5666-01 11 8496628 8496628 G T STK33 5'UTR 0.55 TCGA-A6-5666-01 11 88242118 88242118 C A GRM5 Missense_Mutation p.C1094F 0.50 tolerated_low_confidence(0.68) benign(0.102) TCGA-A6-5666-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.41 deleterious(0) benign(0.371) TCGA-A6-5666-01 12 49435992 49435992 A G KMT2D Missense_Mutation p.S1997P 0.08 probably_damaging(0.99) TCGA-A6-5666-01 12 75687068 75687068 C T CAPS2 Missense_Mutation p.R394Q 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-A6-5666-01 12 95602964 95602964 T A FGD6 Missense_Mutation p.E699V 0.44 tolerated(0.33) benign(0.434) TCGA-A6-5666-01 13 110844620 110844620 G T COL4A1 Missense_Mutation p.Q493K 0.62 benign(0.012) TCGA-A6-5666-01 13 73636656 73636656 T G KLF5 Missense_Mutation p.S307A 0.30 deleterious(0.01) possibly_damaging(0.661) TCGA-A6-5666-01 14 45585386 45585386 T G FKBP3 3'UTR 0.39 TCGA-A6-5666-01 14 63174904 63174904 C T KCNH5 Silent p.T763T 0.40 TCGA-A6-5666-01 14 63468087 63468087 G A KCNH5 Missense_Mutation p.T132M 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-5666-01 14 69341669 69341669 C T ACTN1 Silent p.A884A 0.35 TCGA-A6-5666-01 14 75151212 75151212 G A AREL1 Missense_Mutation p.S63F 0.44 tolerated(0.07) benign(0.007) TCGA-A6-5666-01 15 25953377 25953377 C T ATP10A Silent p.A805A 0.43 TCGA-A6-5666-01 15 50866612 50866612 T C TRPM7 Missense_Mutation p.M1723V 0.41 deleterious(0.01) possibly_damaging(0.788) TCGA-A6-5666-01 15 99029170 99029170 G A FAM169B 5'UTR 0.44 TCGA-A6-5666-01 16 11966717 11966717 A G GSPT1 3'UTR 0.30 TCGA-A6-5666-01 16 1840580 1840580 G T IGFALS 3'UTR 0.47 TCGA-A6-5666-01 16 23080353 23080353 T C USP31 Missense_Mutation p.R1025G 0.09 tolerated_low_confidence(0.06) benign(0) TCGA-A6-5666-01 16 27460420 27460420 C T IL21R Missense_Mutation p.A478V 0.45 tolerated(0.16) benign(0.286) TCGA-A6-5666-01 16 29679421 29679421 G A SPN 3'UTR 0.40 TCGA-A6-5666-01 16 50326716 50326716 C T ADCY7 Missense_Mutation p.R223C 0.35 deleterious(0) possibly_damaging(0.794) TCGA-A6-5666-01 17 18225974 18225974 C T SMCR8 Missense_Mutation p.R802C 0.65 deleterious(0) possibly_damaging(0.863) TCGA-A6-5666-01 17 26696574 26696574 G A VTN Silent p.F161F 0.47 TCGA-A6-5666-01 17 29887046 29887046 G A MIR193A RNA 0.17 TCGA-A6-5666-01 17 53853586 53853586 T C PCTP 3'UTR 0.10 TCGA-A6-5666-01 17 61910505 61910505 G - SMARCD2 Frame_Shift_Del p.P489Lfs*19 0.28 TCGA-A6-5666-01 17 79428068 79428068 G A RP11-1055B8.7 Missense_Mutation p.G2127S 0.59 probably_damaging(1) TCGA-A6-5666-01 18 43505795 43505795 C A EPG5 Missense_Mutation p.R876L 0.79 deleterious(0.04) probably_damaging(0.969) TCGA-A6-5666-01 18 52546614 52546614 A C RAB27B Missense_Mutation p.Q56H 0.78 deleterious(0.03) benign(0.019) TCGA-A6-5666-01 19 10578214 10578214 A G PDE4A Missense_Mutation p.S860G 0.57 tolerated_low_confidence(0.4) benign(0.002) TCGA-A6-5666-01 19 31039255 31039255 A G ZNF536 Missense_Mutation p.N910S 0.36 tolerated(0.09) probably_damaging(0.986) TCGA-A6-5666-01 19 37734538 37734538 G A ZNF383 Missense_Mutation p.R467H 0.34 tolerated(0.23) benign(0.003) TCGA-A6-5666-01 19 3805972 3805972 C T ZFR2 Missense_Mutation p.R932Q 0.40 tolerated(0.26) unknown(0) TCGA-A6-5666-01 19 40520080 40520080 C T ZNF546 Silent p.Y301Y 0.41 TCGA-A6-5666-01 19 45656068 45656068 C T NKPD1 Missense_Mutation p.D543N 0.44 tolerated(0.16) possibly_damaging(0.854) TCGA-A6-5666-01 19 56244405 56244406 - T NLRP9 Frame_Shift_Ins p.M265Dfs*36 0.36 TCGA-A6-5666-01 19 56370574 56370574 C T NLRP4 Silent p.S605S 0.40 TCGA-A6-5666-01 19 56423665 56423665 C A NLRP13 Missense_Mutation p.E506D 0.38 tolerated(0.23) benign(0.077) TCGA-A6-5666-01 19 57286449 57286449 C T ZIM2 Silent p.A397A 0.40 TCGA-A6-5666-01 19 57327108 57327108 C T PEG3 Missense_Mutation p.R901H 0.43 tolerated(0.83) benign(0.001) TCGA-A6-5666-01 19 58601627 58601627 G T ZSCAN18 Missense_Mutation p.P59H 0.57 deleterious(0) probably_damaging(0.996) TCGA-A6-5666-01 1 152659446 152659446 G T LCE2B Missense_Mutation p.A43S 0.38 tolerated_low_confidence(0.54) unknown(0) TCGA-A6-5666-01 1 155279746 155279746 G A FDPS Missense_Mutation p.E56K 0.40 deleterious_low_confidence(0.04) benign(0.227) TCGA-A6-5666-01 1 179604799 179604799 T C TDRD5 Intron 0.12 TCGA-A6-5666-01 1 181702877 181702877 G A CACNA1E Missense_Mutation p.V1085M 0.47 deleterious(0.02) possibly_damaging(0.623) TCGA-A6-5666-01 1 190068114 190068114 G A BRINP3 Silent p.D445D 0.43 TCGA-A6-5666-01 1 203148532 203148532 C T CHI3L1 3'UTR 0.53 TCGA-A6-5666-01 1 211652443 211652443 G A RD3 Missense_Mutation p.R175W 0.39 deleterious(0) probably_damaging(0.997) TCGA-A6-5666-01 1 230927674 230927674 C T CAPN9 Silent p.D574D 0.35 TCGA-A6-5666-01 1 248616857 248616857 C T OR2T2 Silent p.Y253Y 0.31 TCGA-A6-5666-01 1 39469895 39469895 G A AKIRIN1 3'UTR 0.48 TCGA-A6-5666-01 1 46751189 46751189 C A LRRC41 Missense_Mutation p.C447F 0.50 deleterious(0.02) possibly_damaging(0.506) TCGA-A6-5666-01 1 60491137 60491137 G T C1orf87 Missense_Mutation p.L355M 0.46 deleterious(0.01) possibly_damaging(0.858) TCGA-A6-5666-01 1 6162184 6162184 G A CHD5 3'UTR 0.10 TCGA-A6-5666-01 1 90049357 90049357 G A LRRC8B Missense_Mutation p.R383H 0.38 deleterious(0.03) probably_damaging(0.987) TCGA-A6-5666-01 20 31386408 31386408 C T DNMT3B Missense_Mutation p.R545C 0.24 deleterious(0) probably_damaging(0.998) TCGA-A6-5666-01 20 40081564 40081564 G A CHD6 Nonsense_Mutation p.R1047* 0.06 TCGA-A6-5666-01 20 42788970 42788970 C T JPH2 Missense_Mutation p.V153M 0.45 tolerated(0.06) possibly_damaging(0.834) TCGA-A6-5666-01 20 50405522 50405522 G A SALL4 Missense_Mutation p.R874W 0.33 tolerated(0.13) benign(0.1) TCGA-A6-5666-01 21 41450791 41450791 C G DSCAM Missense_Mutation p.E1512Q 0.32 deleterious(0.04) probably_damaging(0.925) TCGA-A6-5666-01 22 18082836 18082836 C T ATP6V1E1 Missense_Mutation p.R131Q 0.41 tolerated(0.48) benign(0.001) TCGA-A6-5666-01 22 38211183 38211183 C T GCAT Silent p.G235G 0.48 TCGA-A6-5666-01 22 44602300 44602300 G A PARVG Silent p.P330P 0.47 TCGA-A6-5666-01 22 51153450 51153450 G T SHANK3 Missense_Mutation p.R763L 0.48 probably_damaging(0.954) TCGA-A6-5666-01 2 105473217 105473217 G A POU3F3 Missense_Mutation p.V417I 0.72 tolerated(0.05) benign(0.214) TCGA-A6-5666-01 2 121746829 121746829 G A GLI2 Silent p.A1113A 0.18 TCGA-A6-5666-01 2 1271265 1271265 C T SNTG2 Silent p.N402N 0.84 TCGA-A6-5666-01 2 14774585 14774585 T C FAM84A Missense_Mutation p.I161T 0.94 deleterious(0) probably_damaging(0.987) TCGA-A6-5666-01 2 170115720 170115720 T G LRP2 Missense_Mutation p.E776D 0.87 possibly_damaging(0.887) TCGA-A6-5666-01 2 198284916 198284916 G A SF3B1 Intron 0.90 TCGA-A6-5666-01 2 210560395 210560395 C A MAP2 Silent p.V1167V 0.85 TCGA-A6-5666-01 2 43452637 43452638 - T ZFP36L2 Frame_Shift_Ins p.E103Gfs*23 0.64 TCGA-A6-5666-01 2 63092087 63092089 GAA - EHBP1 In_Frame_Del p.E365del 0.16 TCGA-A6-5666-01 3 121345749 121345749 G A FBXO40 Missense_Mutation p.V708I 0.38 tolerated_low_confidence(0.33) benign(0.001) TCGA-A6-5666-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-A6-5666-01 3 39543686 39543686 G T MOBP Silent p.R42R 0.13 TCGA-A6-5666-01 3 46875257 46875257 C T PRSS42 Intron 0.46 TCGA-A6-5666-01 3 49695570 49695570 G A BSN Missense_Mutation p.E2861K 0.42 unknown(0) TCGA-A6-5666-01 3 9756611 9756611 G A CPNE9 Missense_Mutation p.D222N 0.45 tolerated(0.11) possibly_damaging(0.805) TCGA-A6-5666-01 4 114290874 114290874 G A ANK2 Silent p.P3841P 0.44 TCGA-A6-5666-01 4 134073782 134073782 C T PCDH10 Silent p.S829S 0.09 TCGA-A6-5666-01 4 156651246 156651246 T C GUCY1A3 Missense_Mutation p.F646L 0.45 deleterious(0.01) probably_damaging(1) TCGA-A6-5666-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.37 TCGA-A6-5666-01 5 135207186 135207186 C T SLC25A48 Intron 0.11 TCGA-A6-5666-01 5 139908853 139908853 A G ANKHD1 Missense_Mutation p.T2108A 0.33 benign(0.008) TCGA-A6-5666-01 5 175959103 175959103 C T RNF44 Missense_Mutation p.V67I 0.42 tolerated_low_confidence(0.55) benign(0.003) TCGA-A6-5666-01 5 413499 413499 C T AHRR Missense_Mutation p.T135M 0.34 tolerated(1) benign(0.003) TCGA-A6-5666-01 6 105585619 105585619 G A BVES 5'Flank 0.28 TCGA-A6-5666-01 6 152651648 152651648 C T SYNE1 Silent p.A4724A 0.43 TCGA-A6-5666-01 6 155153336 155153336 A G SCAF8 Missense_Mutation p.N875D 0.47 tolerated_low_confidence(0.07) possibly_damaging(0.585) TCGA-A6-5666-01 6 160234671 160234671 C T PNLDC1 Silent p.V315V 0.40 TCGA-A6-5666-01 6 36175100 36175100 A G BRPF3 Missense_Mutation p.D539G 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-A6-5666-01 6 74228437 74228437 A C EEF1A1 Missense_Mutation p.D252E 0.39 deleterious_low_confidence(0.02) benign(0.014) TCGA-A6-5666-01 6 76624808 76624808 C G MYO6 3'UTR 0.29 TCGA-A6-5666-01 7 100732457 100732457 A T TRIM56 Missense_Mutation p.T622S 0.41 tolerated(0.95) possibly_damaging(0.868) TCGA-A6-5666-01 7 107823349 107823349 C T NRCAM Missense_Mutation p.E774K 0.38 deleterious(0) benign(0.415) TCGA-A6-5666-01 7 141537868 141537868 G T PRSS37 Missense_Mutation p.D74E 0.36 tolerated(1) probably_damaging(0.996) TCGA-A6-5666-01 7 142575508 142575508 G A TRPV6 Missense_Mutation p.A82V 0.51 tolerated(0.09) possibly_damaging(0.463) TCGA-A6-5666-01 7 14517821 14517821 G T DGKB Silent p.I601I 0.44 TCGA-A6-5666-01 7 151836804 151836804 G A KMT2C Nonsense_Mutation p.R4806* 0.54 TCGA-A6-5666-01 7 44104428 44104428 C T PGAM2 Intron 0.42 TCGA-A6-5666-01 7 5256786 5256786 G A WIPI2 Missense_Mutation p.G182R 0.44 deleterious(0) probably_damaging(0.998) TCGA-A6-5666-01 7 83590860 83590860 G T SEMA3A Missense_Mutation p.L715I 0.45 deleterious(0.04) possibly_damaging(0.771) TCGA-A6-5666-01 7 87835697 87835697 T C SRI 3'UTR 0.40 TCGA-A6-5666-01 7 97852303 97852303 G A TECPR1 Missense_Mutation p.A976V 0.51 deleterious(0.03) benign(0.126) TCGA-A6-5666-01 8 17927368 17927368 G T ASAH1 Missense_Mutation p.S95Y 0.65 tolerated(0.53) benign(0.028) TCGA-A6-5666-01 8 23290435 23290435 T C ENTPD4 3'UTR 0.11 TCGA-A6-5666-01 8 62212594 62212594 C T CLVS1 Missense_Mutation p.R70C 0.50 tolerated(0.11) benign(0.43) TCGA-A6-5666-01 9 137716500 137716500 C T COL5A1 Missense_Mutation p.R1585W 0.44 unknown(0) TCGA-A6-5666-01 9 138774713 138774713 A C CAMSAP1 Missense_Mutation p.S124R 0.47 tolerated(0.08) possibly_damaging(0.772) TCGA-A6-5666-01 X 100402774 100402774 G A CENPI Missense_Mutation p.A617T 0.43 deleterious(0.02) possibly_damaging(0.59) TCGA-A6-5666-01 X 104961476 104961476 G T IL1RAPL2 Nonsense_Mutation p.E297* 0.86 TCGA-A6-5666-01 X 114141352 114141352 G A HTR2C Missense_Mutation p.G251S 0.42 tolerated(0.4) benign(0.112) TCGA-A6-5666-01 X 152686376 152686376 G A ZFP92 Missense_Mutation p.A181T 0.94 tolerated(0.38) possibly_damaging(0.521) TCGA-A6-5667-01 10 115402767 115402767 T G NRAP Silent p.R381R 0.12 TCGA-A6-5667-01 10 135025285 135025285 C T KNDC1 Missense_Mutation p.P1387S 0.65 tolerated(0.4) benign(0.082) TCGA-A6-5667-01 10 6274912 6274912 C T PFKFB3 3'UTR 0.39 TCGA-A6-5667-01 11 101793446 101793446 G A KIAA1377 Missense_Mutation p.R68Q 0.61 deleterious(0) probably_damaging(1) TCGA-A6-5667-01 11 1255481 1255481 G T MUC5B Silent p.A808A 0.14 TCGA-A6-5667-01 11 126174097 126174097 G A DCPS Missense_Mutation p.R41H 0.25 tolerated(0.36) benign(0.006) TCGA-A6-5667-01 11 66392229 66392229 C T RBM14 Silent p.S294S 0.16 TCGA-A6-5667-01 11 71804597 71804597 G A LRTOMT 5'UTR 0.64 TCGA-A6-5667-01 12 10588532 10588532 C T KLRC2 Silent p.K18K 0.17 TCGA-A6-5667-01 12 113496127 113496127 G A DTX1 Missense_Mutation p.V44M 0.50 deleterious(0) possibly_damaging(0.603) TCGA-A6-5667-01 12 113748131 113748131 G A SLC8B1 Missense_Mutation p.P389S 0.58 deleterious(0) benign(0.356) TCGA-A6-5667-01 12 124832436 124832436 G A NCOR2 Missense_Mutation p.P1336L 0.47 probably_damaging(0.999) TCGA-A6-5667-01 12 130185040 130185040 C A TMEM132D Missense_Mutation p.A95S 0.31 deleterious(0) possibly_damaging(0.879) TCGA-A6-5667-01 12 16135269 16135269 G A DERA Missense_Mutation p.R179H 0.48 deleterious(0) probably_damaging(0.992) TCGA-A6-5667-01 12 2943843 2943843 C T NRIP2 Missense_Mutation p.D103N 0.23 deleterious(0) probably_damaging(1) TCGA-A6-5667-01 12 45803257 45803257 A G ANO6 Silent p.E687E 0.22 TCGA-A6-5667-01 12 6424723 6424723 A G PLEKHG6 Missense_Mutation p.M155V 0.47 deleterious(0.01) benign(0.396) TCGA-A6-5667-01 12 94975520 94975520 C T TMCC3 Silent p.L291L 0.27 TCGA-A6-5667-01 13 110831649 110831649 C T COL4A1 Silent p.A771A 0.49 TCGA-A6-5667-01 13 29599302 29599302 G A MTUS2 Missense_Mutation p.R166Q 0.51 tolerated(1) benign(0.017) TCGA-A6-5667-01 14 61180080 61180080 A G SIX4 3'UTR 0.10 TCGA-A6-5667-01 15 37385925 37385925 C T MEIS2 Missense_Mutation p.E166K 0.52 deleterious(0) probably_damaging(0.95) TCGA-A6-5667-01 15 53049699 53049699 A T ONECUT1 3'UTR 0.16 TCGA-A6-5667-01 15 89074048 89074048 G A DET1 Missense_Mutation p.H308Y 0.35 deleterious(0) probably_damaging(0.984) TCGA-A6-5667-01 15 99251323 99251323 C A IGF1R Missense_Mutation p.N209K 0.12 tolerated(0.25) benign(0.045) TCGA-A6-5667-01 16 19191724 19191724 G A SYT17 Missense_Mutation p.R65Q 0.31 tolerated(0.37) benign(0) TCGA-A6-5667-01 16 538992 538992 C T RAB11FIP3 Silent p.L419L 0.23 TCGA-A6-5667-01 16 732800 732800 G A JMJD8 Silent p.L284L 0.24 TCGA-A6-5667-01 17 10258295 10258295 G A MYH13 Missense_Mutation p.S273F 0.13 deleterious(0) probably_damaging(0.997) TCGA-A6-5667-01 17 10416272 10416272 C T MYH1 Silent p.E272E 0.04 TCGA-A6-5667-01 17 2266141 2266141 C T SGSM2 Silent p.Y156Y 0.38 TCGA-A6-5667-01 17 37565724 37565724 T G MED1 Missense_Mutation p.E917A 0.06 deleterious_low_confidence(0.01) benign(0.396) TCGA-A6-5667-01 17 48187358 48187360 ACA - PDK2 In_Frame_Del p.N375del 0.59 TCGA-A6-5667-01 17 68128892 68128892 C T KCNJ16 Missense_Mutation p.R222C 0.29 deleterious(0) probably_damaging(0.999) TCGA-A6-5667-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.71 deleterious(0) probably_damaging(1) TCGA-A6-5667-01 17 7756404 7756404 G A KDM6B Missense_Mutation p.R1566H 0.44 probably_damaging(0.915) TCGA-A6-5667-01 18 24496327 24496327 C T CHST9 Missense_Mutation p.V410M 0.66 deleterious(0.02) probably_damaging(1) TCGA-A6-5667-01 18 44104487 44104487 G A LOXHD1 Silent p.A495A 0.55 TCGA-A6-5667-01 18 57567767 57567767 T C PMAIP1 Intron 0.55 TCGA-A6-5667-01 19 48945047 48945047 C T GRIN2D Silent p.Y758Y 0.75 TCGA-A6-5667-01 19 5240268 5240268 C T PTPRS Missense_Mutation p.R549Q 0.41 tolerated(0.52) probably_damaging(0.992) TCGA-A6-5667-01 1 10207030 10207030 C T UBE4B Missense_Mutation p.R825W 0.37 deleterious(0) probably_damaging(0.99) TCGA-A6-5667-01 1 1599911 1599911 C A SLC35E2B Missense_Mutation p.D279Y 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-A6-5667-01 1 1666274 1666274 C A SLC35E2 Missense_Mutation p.G196V 0.17 deleterious(0) probably_damaging(0.956) TCGA-A6-5667-01 1 175097203 175097203 G A TNN Silent p.A1027A 0.09 TCGA-A6-5667-01 1 192628663 192628663 A T RGS13 3'UTR 0.20 TCGA-A6-5667-01 1 192628664 192628664 A T RGS13 3'UTR 0.19 TCGA-A6-5667-01 1 192628665 192628665 A C RGS13 3'UTR 0.19 TCGA-A6-5667-01 1 233464518 233464518 G A MLK4 Missense_Mutation p.M248I 0.49 deleterious(0.01) possibly_damaging(0.761) TCGA-A6-5667-01 1 84408173 84408175 CTT - TTLL7 In_Frame_Del p.K232del 0.47 TCGA-A6-5667-01 1 87458812 87458812 T A RP5-1052I5.2 Splice_Site p.X16_splice 0.37 TCGA-A6-5667-01 20 29960671 29960672 - A DEFB118 Frame_Shift_Ins p.C27Mfs*34 0.28 TCGA-A6-5667-01 20 31889103 31889103 C A BPIFB1 Missense_Mutation p.T271K 0.09 tolerated(0.08) benign(0.063) TCGA-A6-5667-01 22 25272596 25272596 G A SGSM1 Silent p.Q503Q 0.53 TCGA-A6-5667-01 22 50721829 50721830 - C PLXNB2 Frame_Shift_Ins p.V873Cfs*66 0.18 TCGA-A6-5667-01 2 102014162 102014162 C T RFX8 Missense_Mutation p.E424K 0.42 tolerated(1) benign(0.001) TCGA-A6-5667-01 2 170088350 170088350 C T LRP2 Missense_Mutation p.V1701M 0.42 benign(0.004) TCGA-A6-5667-01 2 170354161 170354161 A T BBS5 Nonsense_Mutation p.K215* 0.41 TCGA-A6-5667-01 2 170387961 170387961 G A FASTKD1 Missense_Mutation p.P743L 0.19 deleterious(0.05) probably_damaging(0.963) TCGA-A6-5667-01 2 201459998 201459998 G A AOX1 Missense_Mutation p.R36Q 0.37 tolerated(0.16) benign(0.023) TCGA-A6-5667-01 2 215274985 215274985 C T SPAG16 Silent p.D614D 0.36 TCGA-A6-5667-01 2 238244971 238244971 G T COL6A3 Silent p.A2924A 0.42 TCGA-A6-5667-01 2 96799199 96799199 G A ASTL Silent p.D140D 0.07 TCGA-A6-5667-01 3 10083244 10083244 T G FANCD2 Intron 0.57 TCGA-A6-5667-01 3 109213112 109213112 G T RP11-702L6.4 RNA 0.49 TCGA-A6-5667-01 3 109213113 109213113 C G RP11-702L6.4 RNA 0.49 TCGA-A6-5667-01 3 113753983 113753983 G A KIAA1407 Missense_Mutation p.R203C 0.26 deleterious(0.03) probably_damaging(1) TCGA-A6-5667-01 3 7782053 7782054 - A GRM7 Frame_Shift_Ins p.K906Efs*6 0.10 TCGA-A6-5667-01 3 89521640 89521640 G T EPHA3 Missense_Mutation p.S906I 0.23 deleterious(0) benign(0.287) TCGA-A6-5667-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.74 TCGA-A6-5667-01 5 140558698 140558698 G A PCDHB8 Silent p.A361A 0.10 TCGA-A6-5667-01 5 140768869 140768869 G T PCDHGB4 Missense_Mutation p.R473M 0.42 deleterious(0.02) possibly_damaging(0.657) TCGA-A6-5667-01 5 140798952 140798952 C T PCDHGB7 Missense_Mutation p.A509V 0.26 deleterious(0.03) possibly_damaging(0.753) TCGA-A6-5667-01 5 71492638 71492638 G A MAP1B Silent p.T1152T 0.04 TCGA-A6-5667-01 6 152265534 152265534 C T ESR1 Silent p.S329S 0.60 TCGA-A6-5667-01 6 28499667 28499667 G A GPX5 Silent p.G118G 0.13 TCGA-A6-5667-01 6 28964256 28964256 C T ZNF311 Missense_Mutation p.D175N 0.13 tolerated(0.56) benign(0.023) TCGA-A6-5667-01 6 3127563 3127563 G A BPHL Missense_Mutation p.G100E 0.54 deleterious(0) probably_damaging(1) TCGA-A6-5667-01 6 69348686 69348686 G A BAI3 Missense_Mutation p.G40E 0.23 deleterious(0) probably_damaging(0.996) TCGA-A6-5667-01 6 84233917 84233917 C T PRSS35 Missense_Mutation p.R253W 0.39 deleterious(0) probably_damaging(1) TCGA-A6-5667-01 7 134252918 134252918 C T AKR1B15 Silent p.L53L 0.21 TCGA-A6-5667-01 7 38500911 38500911 G A AMPH Missense_Mutation p.P330L 0.06 deleterious(0) probably_damaging(0.999) TCGA-A6-5667-01 7 5545244 5545244 A T FBXL18 Missense_Mutation p.D12E 0.34 tolerated_low_confidence(1) benign(0.001) TCGA-A6-5667-01 7 93063580 93063580 G A CALCR Silent p.C426C 0.30 TCGA-A6-5667-01 8 104930677 104930677 C A RIMS2 Missense_Mutation p.P682Q 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-A6-5667-01 8 145998770 145998770 G A ZNF34 Missense_Mutation p.R522W 0.15 deleterious(0) possibly_damaging(0.87) TCGA-A6-5667-01 8 42977249 42977249 G A POMK Splice_Site p.X95_splice 0.13 TCGA-A6-5667-01 8 82357174 82357174 T C PMP2 Missense_Mutation p.I42V 0.40 tolerated(0.16) benign(0.003) TCGA-A6-5667-01 9 22451426 22451426 G A DMRTA1 Missense_Mutation p.R344Q 0.34 tolerated(0.35) benign(0.027) TCGA-A6-5667-01 X 109696519 109696519 C A RGAG1 Missense_Mutation p.P892T 0.76 tolerated(0.1) possibly_damaging(0.901) TCGA-A6-5667-01 X 119589233 119589233 A G LAMP2 Missense_Mutation p.F126L 0.79 deleterious(0) probably_damaging(0.98) TCGA-A6-5667-01 X 1407737 1407737 G A CSF2RA Silent p.T143T 0.75 TCGA-A6-5667-01 X 29301289 29301289 G A IL1RAPL1 Missense_Mutation p.R106Q 0.77 deleterious(0.03) probably_damaging(0.978) TCGA-A6-5667-01 X 77912431 77912431 C G ZCCHC5 3'UTR 0.10 TCGA-A6-5667-01 X 83320027 83320027 C G RPS6KA6 Missense_Mutation p.Q688H 0.28 tolerated(0.35) benign(0.001) TCGA-A6-6137-01 10 114920402 114920402 G A TCF7L2 Missense_Mutation p.R448Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-A6-6137-01 10 1151084 1151084 C T WDR37 Missense_Mutation p.T327M 0.21 deleterious(0) probably_damaging(0.996) TCGA-A6-6137-01 10 121578853 121578853 C G INPP5F Intron 0.41 TCGA-A6-6137-01 10 27702728 27702728 G A PTCHD3 Missense_Mutation p.A151V 0.31 tolerated(0.81) benign(0.054) TCGA-A6-6137-01 10 31138244 31138244 G C ZNF438 Missense_Mutation p.P364A 0.19 tolerated(1) benign(0) TCGA-A6-6137-01 10 81060521 81060521 A G ZMIZ1 Missense_Mutation p.H614R 0.08 probably_damaging(0.996) TCGA-A6-6137-01 10 88422073 88422073 C T OPN4 Missense_Mutation p.R391C 0.35 tolerated(0.18) possibly_damaging(0.761) TCGA-A6-6137-01 10 88769570 88769570 G A RP11-96C23.10 RNA 0.29 TCGA-A6-6137-01 10 89574320 89574320 G A ATAD1 Missense_Mutation p.R13W 0.13 deleterious(0) probably_damaging(0.991) TCGA-A6-6137-01 11 10795708 10795710 GAG - CTR9 In_Frame_Del p.R962del 0.26 TCGA-A6-6137-01 11 115375049 115375049 G A CADM1 Missense_Mutation p.P22S 0.45 tolerated(0.71) possibly_damaging(0.641) TCGA-A6-6137-01 11 122774924 122774924 G A C11orf63 Silent p.E212E 0.30 TCGA-A6-6137-01 11 123516374 123516374 G A SCN3B Missense_Mutation p.S47F 0.23 deleterious(0) probably_damaging(0.963) TCGA-A6-6137-01 11 30034239 30034239 G A KCNA4 5'UTR 0.36 TCGA-A6-6137-01 11 4870167 4870167 C A OR51S1 Missense_Mutation p.G91V 0.32 deleterious(0.03) probably_damaging(0.987) TCGA-A6-6137-01 11 56237764 56237764 C G OR5M3 Missense_Mutation p.W70C 0.34 tolerated(1) benign(0.001) TCGA-A6-6137-01 11 64421186 64421186 G A NRXN2 Missense_Mutation p.R800C 0.18 deleterious(0) benign(0.036) TCGA-A6-6137-01 12 101757501 101757501 C T UTP20 Missense_Mutation p.L1980F 0.07 deleterious(0) probably_damaging(0.95) TCGA-A6-6137-01 12 110205875 110205875 C T FAM222A Silent p.D47D 0.10 TCGA-A6-6137-01 12 119617243 119617243 C T HSPB8 Silent p.D42D 0.23 TCGA-A6-6137-01 12 123494520 123494520 C T PITPNM2 Missense_Mutation p.E174K 0.43 deleterious(0) benign(0.22) TCGA-A6-6137-01 12 124796373 124796373 C T FAM101A 5'UTR 0.22 TCGA-A6-6137-01 12 12917592 12917592 G A APOLD1 Intron 0.21 TCGA-A6-6137-01 12 130184469 130184469 C T TMEM132D Missense_Mutation p.R285H 0.24 deleterious(0.05) benign(0.073) TCGA-A6-6137-01 12 131590394 131590394 G A GPR133 Missense_Mutation p.R624H 0.50 tolerated(0.76) benign(0.003) TCGA-A6-6137-01 12 40689296 40689296 A T LRRK2 Missense_Mutation p.E982D 0.16 tolerated(0.34) benign(0.074) TCGA-A6-6137-01 12 46231437 46231437 C T ARID2 Missense_Mutation p.T426M 0.10 deleterious(0) probably_damaging(0.975) TCGA-A6-6137-01 12 53670629 53670629 G A ESPL1 Silent p.T642T 0.09 TCGA-A6-6137-01 13 25672112 25672112 C T PABPC3 Silent p.L592L 0.42 TCGA-A6-6137-01 13 30098316 30098316 G A SLC7A1 Missense_Mutation p.A260V 0.13 deleterious(0) probably_damaging(1) TCGA-A6-6137-01 13 31903690 31903690 C T B3GALTL Missense_Mutation p.S461L 0.52 deleterious(0) probably_damaging(1) TCGA-A6-6137-01 13 92003452 92003453 TC - MIR17HG RNA 0.19 TCGA-A6-6137-01 13 99338446 99338446 G A SLC15A1 Nonsense_Mutation p.Q645* 0.44 TCGA-A6-6137-01 14 106208296 106208296 A G IGHG1 Missense_Mutation p.Y202H 0.24 deleterious(0) probably_damaging(0.923) TCGA-A6-6137-01 14 20846381 20846381 G A TEP1 Silent p.P1841P 0.22 TCGA-A6-6137-01 14 24614666 24614666 G T PSME2 Silent p.S51S 0.08 TCGA-A6-6137-01 14 45398136 45398136 A G KLHL28 3'UTR 0.12 TCGA-A6-6137-01 14 47566079 47566080 - T MDGA2 Frame_Shift_Ins p.S392Vfs*25 0.17 TCGA-A6-6137-01 14 52478374 52478374 C T NID2 Missense_Mutation p.D1150N 0.12 deleterious(0) probably_damaging(0.991) TCGA-A6-6137-01 14 93398029 93398029 G T CHGA Nonsense_Mutation p.E264* 0.08 TCGA-A6-6137-01 14 95234769 95234769 G A GSC 3'UTR 0.11 TCGA-A6-6137-01 15 25959161 25959161 G A ATP10A Silent p.N668N 0.42 TCGA-A6-6137-01 15 42149116 42149116 G A SPTBN5 Silent p.L2915L 0.24 TCGA-A6-6137-01 15 42154472 42154472 G A SPTBN5 Silent p.A2468A 0.40 TCGA-A6-6137-01 15 82443893 82443893 C T EFTUD1 Missense_Mutation p.A968T 0.12 deleterious(0.02) benign(0.178) TCGA-A6-6137-01 16 88932241 88932241 C T PABPN1L Missense_Mutation p.G122R 0.25 tolerated(0.84) benign(0.014) TCGA-A6-6137-01 17 28405430 28405430 C T EFCAB5 Missense_Mutation p.R979W 0.23 tolerated(0.09) benign(0.07) TCGA-A6-6137-01 17 34036281 34036281 C T AP2B1 Silent p.S831S 0.44 TCGA-A6-6137-01 17 41879047 41879047 G T MPP3 3'UTR 0.26 TCGA-A6-6137-01 17 55016345 55016345 A T COIL 3'UTR 0.18 TCGA-A6-6137-01 17 56276417 56276417 G A EPX Silent p.T379T 0.29 TCGA-A6-6137-01 17 6367521 6367521 C A PITPNM3 Missense_Mutation p.V709F 0.27 tolerated(0.16) benign(0.128) TCGA-A6-6137-01 17 67013901 67013901 G C ABCA9 Missense_Mutation p.L933V 0.07 tolerated(0.3) benign(0.252) TCGA-A6-6137-01 17 67024675 67024675 C G ABCA9 Splice_Site p.X539_splice 0.12 TCGA-A6-6137-01 17 7577124 7577124 C A TP53 Missense_Mutation p.V272L 0.49 deleterious(0) probably_damaging(0.923) TCGA-A6-6137-01 18 34205531 34205531 C T FHOD3 Missense_Mutation p.R339W 0.24 deleterious(0) probably_damaging(0.941) TCGA-A6-6137-01 18 48422191 48422191 A G ME2 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-A6-6137-01 18 55027527 55027527 G A ST8SIA3 3'UTR 0.17 TCGA-A6-6137-01 19 11512694 11512694 C T RGL3 Missense_Mutation p.E493K 0.25 deleterious(0.01) probably_damaging(0.962) TCGA-A6-6137-01 19 13338298 13338298 T C CACNA1A Missense_Mutation p.M1858V 0.08 benign(0) TCGA-A6-6137-01 19 36120460 36120460 T C RBM42 Missense_Mutation p.I56T 0.24 tolerated(0.12) probably_damaging(0.989) TCGA-A6-6137-01 19 41086253 41086253 C T SHKBP1 Missense_Mutation p.R142W 0.21 deleterious(0.01) possibly_damaging(0.757) TCGA-A6-6137-01 19 43430684 43430684 G A PSG7 Silent p.P298P 0.11 TCGA-A6-6137-01 19 52716222 52716222 G A PPP2R1A Silent p.L222L 0.25 TCGA-A6-6137-01 19 53762788 53762788 G A VN1R2 Missense_Mutation p.R387Q 0.13 tolerated(0.15) benign(0) TCGA-A6-6137-01 19 56973727 56973727 G A ZNF667 Missense_Mutation p.R5W 0.10 deleterious(0) possibly_damaging(0.535) TCGA-A6-6137-01 19 57764449 57764449 G A ZNF805 Missense_Mutation p.G88R 0.24 tolerated(0.56) benign(0.009) TCGA-A6-6137-01 19 58420213 58420213 C T ZNF417 Missense_Mutation p.C478Y 0.37 tolerated(0.54) benign(0.024) TCGA-A6-6137-01 19 9068747 9068747 A C MUC16 Silent p.P6233P 0.31 TCGA-A6-6137-01 1 100856305 100856305 A G CDC14A Silent p.R78R 0.30 TCGA-A6-6137-01 1 113252867 113252867 C T PPM1J Missense_Mutation p.R479H 0.16 deleterious(0.01) probably_damaging(0.964) TCGA-A6-6137-01 1 114973431 114973432 - T TRIM33 Frame_Shift_Ins p.Q382Tfs*20 0.10 TCGA-A6-6137-01 1 12726665 12726666 - T AADACL4 Frame_Shift_Ins p.D384* 0.16 TCGA-A6-6137-01 1 1333695 1333695 C T CCNL2 Missense_Mutation p.A131T 0.37 deleterious(0.02) probably_damaging(1) TCGA-A6-6137-01 1 145826935 145826935 A G GPR89A 5'UTR 0.08 TCGA-A6-6137-01 1 152060539 152060539 T G TCHHL1 Silent p.T27T 0.32 TCGA-A6-6137-01 1 152286415 152286415 G A FLG Missense_Mutation p.S316L 0.17 probably_damaging(0.984) TCGA-A6-6137-01 1 157095391 157095391 C A ETV3 Missense_Mutation p.V261F 0.25 tolerated(0.08) possibly_damaging(0.817) TCGA-A6-6137-01 1 159166233 159166233 C T CADM3 Silent p.R291R 0.07 TCGA-A6-6137-01 1 169576316 169576316 G A SELP Missense_Mutation p.P464S 0.11 tolerated(0.26) probably_damaging(0.994) TCGA-A6-6137-01 1 196801206 196801206 T C CFHR1 3'UTR 0.53 TCGA-A6-6137-01 1 203017714 203017714 C T PPFIA4 5'Flank 0.14 TCGA-A6-6137-01 1 22927917 22927917 G A EPHA8 Missense_Mutation p.A952T 0.16 tolerated(1) probably_damaging(0.999) TCGA-A6-6137-01 1 247061556 247061556 A G AHCTF1 Missense_Mutation p.L535P 0.06 deleterious(0) probably_damaging(1) TCGA-A6-6137-01 1 26090443 26090443 G A MAN1C1 Missense_Mutation p.G376R 0.17 deleterious(0) possibly_damaging(0.65) TCGA-A6-6137-01 1 34554768 34554768 C T CSMD2 Missense_Mutation p.G32S 0.34 tolerated(0.11) benign(0.2) TCGA-A6-6137-01 1 60370597 60370597 G A CYP2J2 Silent p.N379N 0.08 TCGA-A6-6137-01 1 67560959 67560959 T A C1orf141 Missense_Mutation p.I188L 0.32 deleterious(0.01) benign(0.274) TCGA-A6-6137-01 1 74832995 74832995 G T FPGT-TNNI3K Missense_Mutation p.L525F 0.12 tolerated(0.71) benign(0.425) TCGA-A6-6137-01 20 44175932 44175932 G - EPPIN-WFDC6 Frame_Shift_Del p.P22Lfs*3 0.31 TCGA-A6-6137-01 22 23243353 23243353 G A IGLC2 Missense_Mutation p.A67T 0.13 benign(0.013) TCGA-A6-6137-01 22 25755850 25755850 G A LRP5L Silent p.I70I 0.09 TCGA-A6-6137-01 22 38822859 38822859 G A KCNJ4 Missense_Mutation p.R427C 0.23 tolerated_low_confidence(0.1) possibly_damaging(0.483) TCGA-A6-6137-01 2 102836359 102836359 G A IL1RL2 Silent p.R291R 0.09 TCGA-A6-6137-01 2 110922667 110922667 C T NPHP1 Silent p.A230A 0.09 TCGA-A6-6137-01 2 131673181 131673181 G A ARHGEF4 5'Flank 0.08 TCGA-A6-6137-01 2 141762943 141762943 C T LRP1B Missense_Mutation p.D822N 0.35 possibly_damaging(0.555) TCGA-A6-6137-01 2 166245228 166245228 C T SCN2A Missense_Mutation p.R1638C 0.23 deleterious(0) probably_damaging(0.961) TCGA-A6-6137-01 2 172945058 172945058 C T METAP1D Missense_Mutation p.S311L 0.33 deleterious(0) possibly_damaging(0.834) TCGA-A6-6137-01 2 177016482 177016482 G A HOXD4 Missense_Mutation p.A41T 0.32 tolerated(0.39) benign(0.003) TCGA-A6-6137-01 2 179614223 179614223 C A TTN Intron 0.08 TCGA-A6-6137-01 2 179638353 179638353 T A TTN Missense_Mutation p.K2477M 0.12 TCGA-A6-6137-01 2 189454468 189454468 G A GULP1 Intron 0.09 TCGA-A6-6137-01 2 189871681 189871681 G A COL3A1 Missense_Mutation p.G1074S 0.11 probably_damaging(0.998) TCGA-A6-6137-01 2 190719575 190719575 G A PMS1 Missense_Mutation p.C526Y 0.11 tolerated(0.6) benign(0.067) TCGA-A6-6137-01 2 217142554 217142554 C T MARCH4 Missense_Mutation p.V236I 0.34 deleterious(0.01) possibly_damaging(0.727) TCGA-A6-6137-01 2 219447800 219447800 C T RQCD1 Missense_Mutation p.P104L 0.22 deleterious(0.01) benign(0.098) TCGA-A6-6137-01 2 29222106 29222106 C T FAM179A Missense_Mutation p.R67C 0.25 tolerated(0.06) benign(0.001) TCGA-A6-6137-01 2 39184172 39184172 C T ARHGEF33 Missense_Mutation p.R452W 0.40 deleterious(0) probably_damaging(0.992) TCGA-A6-6137-01 2 48809169 48809169 G A STON1-GTF2A1L Missense_Mutation p.R466Q 0.09 tolerated(0.32) benign(0.028) TCGA-A6-6137-01 2 75347720 75347720 C T TACR1 Silent p.P188P 0.11 TCGA-A6-6137-01 3 124952691 124952691 G T ZNF148 Silent p.G293G 0.29 TCGA-A6-6137-01 3 125769847 125769847 G A SLC41A3 Missense_Mutation p.P107L 0.23 deleterious(0) probably_damaging(0.983) TCGA-A6-6137-01 3 129156759 129156759 C T MBD4 Missense_Mutation p.G47R 0.09 tolerated(0.77) benign(0.014) TCGA-A6-6137-01 3 138763526 138763526 G A PRR23C 5'UTR 0.36 TCGA-A6-6137-01 3 178928076 178928084 TTAGAAGAT - PIK3CA In_Frame_Del p.E453_L455del 0.19 TCGA-A6-6137-01 3 45714269 45714269 G A LIMD1 Missense_Mutation p.V577M 0.10 deleterious(0) probably_damaging(0.997) TCGA-A6-6137-01 3 49740092 49740092 G A RNF123 Silent p.E552E 0.26 TCGA-A6-6137-01 4 119229606 119229606 C T PRSS12 Missense_Mutation p.R539H 0.10 deleterious(0) probably_damaging(0.998) TCGA-A6-6137-01 4 120240783 120240783 C G FABP2 Missense_Mutation p.E86Q 0.26 deleterious(0.02) benign(0.212) TCGA-A6-6137-01 4 126240168 126240168 G T FAT4 Missense_Mutation p.A868S 0.34 probably_damaging(0.999) TCGA-A6-6137-01 4 13603243 13603243 C G BOD1L1 Missense_Mutation p.V1761L 0.10 benign(0.073) TCGA-A6-6137-01 4 138442346 138442346 G A PCDH18 Missense_Mutation p.S1082F 0.06 tolerated(0.05) benign(0.352) TCGA-A6-6137-01 4 145032288 145032288 C G GYPA 3'UTR 0.30 TCGA-A6-6137-01 4 153247367 153247367 G A FBXW7 Nonsense_Mutation p.R479* 0.21 TCGA-A6-6137-01 4 165961535 165961535 T G TRIM60 Missense_Mutation p.L104R 0.16 deleterious(0.04) benign(0.144) TCGA-A6-6137-01 4 4199600 4199600 C T OTOP1 Missense_Mutation p.V321M 0.17 deleterious(0.03) probably_damaging(0.911) TCGA-A6-6137-01 4 44176887 44176887 T A KCTD8 Nonsense_Mutation p.K448* 0.24 TCGA-A6-6137-01 4 59358 59358 C A ZNF595 Missense_Mutation p.F13L 0.04 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-A6-6137-01 4 69098105 69098105 T C TMPRSS11B Missense_Mutation p.T167A 0.13 tolerated(0.13) benign(0.002) TCGA-A6-6137-01 4 80328937 80328937 T G GK2 Missense_Mutation p.K140Q 0.09 tolerated(0.51) possibly_damaging(0.836) TCGA-A6-6137-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.43 TCGA-A6-6137-01 5 112175642 112175642 G T APC Nonsense_Mutation p.E1451* 0.31 TCGA-A6-6137-01 5 140215211 140215211 C T PCDHA7 Missense_Mutation p.R415C 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.605) TCGA-A6-6137-01 5 140237331 140237331 G A PCDHA10 Silent p.A566A 0.21 TCGA-A6-6137-01 5 140475128 140475128 C A PCDHB2 Missense_Mutation p.Q252K 0.17 tolerated_low_confidence(0.09) benign(0.042) TCGA-A6-6137-01 5 140764120 140764120 G A PCDHGA7 Missense_Mutation p.V552M 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-A6-6137-01 5 153857145 153857145 A C HAND1 Missense_Mutation p.Y142D 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6137-01 5 38481811 38481811 T C LIFR Silent p.P1060P 0.10 TCGA-A6-6137-01 5 79286025 79286025 C T MTX3 Translation_Start_Site p.M1? 0.12 tolerated_low_confidence(0.35) benign(0) TCGA-A6-6137-01 5 95116039 95116039 G A RHOBTB3 Missense_Mutation p.A456T 0.07 tolerated(0.18) benign(0.032) TCGA-A6-6137-01 5 99922029 99922029 G T FAM174A 3'UTR 0.30 TCGA-A6-6137-01 6 112422091 112422091 G A FAM229B 3'UTR 0.16 TCGA-A6-6137-01 6 73787212 73787212 C T KCNQ5 Missense_Mutation p.H262Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-A6-6137-01 6 75834065 75834065 C A COL12A1 Silent p.L2210L 0.28 TCGA-A6-6137-01 6 99285815 99285815 G T POU3F2 3'UTR 0.10 TCGA-A6-6137-01 7 102097652 102097652 C T ALKBH4 3'UTR 0.36 TCGA-A6-6137-01 7 115590927 115590927 C T TFEC Splice_Site p.X172_splice 0.19 TCGA-A6-6137-01 7 116960838 116960838 T C WNT2 Silent p.R31R 0.12 TCGA-A6-6137-01 7 127669525 127669525 G A LRRC4 Missense_Mutation p.T390I 0.19 deleterious(0) probably_damaging(0.983) TCGA-A6-6137-01 7 128498528 128498528 G A FLNC Nonsense_Mutation p.W2710* 0.15 TCGA-A6-6137-01 7 150884078 150884078 A G ASB10 Missense_Mutation p.V47A 0.09 tolerated(0.27) benign(0.001) TCGA-A6-6137-01 7 39379326 39379326 G A POU6F2 Silent p.P199P 0.40 TCGA-A6-6137-01 7 64168295 64168295 A G ZNF107 Missense_Mutation p.H538R 0.22 tolerated(0.5) benign(0.005) TCGA-A6-6137-01 7 94055131 94055131 G A COL1A2 Missense_Mutation p.V969M 0.13 unknown(0) TCGA-A6-6137-01 8 27509039 27509039 C T SCARA3 Missense_Mutation p.R41C 0.10 tolerated(0.05) possibly_damaging(0.613) TCGA-A6-6137-01 8 30703089 30703089 C T TEX15 Missense_Mutation p.V1149I 0.14 tolerated(0.07) benign(0.007) TCGA-A6-6137-01 8 37728020 37728020 G T RAB11FIP1 Missense_Mutation p.A1184E 0.16 deleterious(0) benign(0.205) TCGA-A6-6137-01 8 39587442 39587442 G A ADAM18 Missense_Mutation p.D735N 0.10 tolerated_low_confidence(1) benign(0.009) TCGA-A6-6137-01 8 8869055 8869055 A G ERI1 Silent p.G97G 0.48 TCGA-A6-6137-01 9 114348286 114348286 G A PTGR1 Silent p.G123G 0.09 TCGA-A6-6137-01 9 117240876 117240876 C T DFNB31 Missense_Mutation p.R265Q 0.12 tolerated(0.08) benign(0.002) TCGA-A6-6137-01 9 126777643 126777643 C T LHX2 Missense_Mutation p.A189V 0.40 tolerated(0.3) benign(0.015) TCGA-A6-6137-01 X 134495114 134495114 A G ZNF449 3'UTR 0.75 TCGA-A6-6137-01 X 155007009 155007009 C A SPRY3 3'UTR 0.12 TCGA-A6-6137-01 X 63412095 63412095 G A AMER1 Nonsense_Mutation p.R358* 0.81 TCGA-A6-6137-01 X 69397389 69397389 C G DGAT2L6 5'UTR 0.37 TCGA-A6-6137-01 X 82763639 82763639 C T POU3F4 Missense_Mutation p.H103Y 0.09 tolerated(0.3) possibly_damaging(0.61) TCGA-A6-6138-01 10 102222887 102222887 G T WNT8B 5'UTR 0.34 TCGA-A6-6138-01 10 15254772 15254772 C T FAM171A1 3'UTR 0.29 TCGA-A6-6138-01 10 26446318 26446318 G A MYO3A Missense_Mutation p.R958H 0.32 deleterious(0) probably_damaging(0.99) TCGA-A6-6138-01 10 63170155 63170155 G A TMEM26 Silent p.N344N 0.16 TCGA-A6-6138-01 11 113860379 113860379 G A HTR3A Missense_Mutation p.R482H 0.30 tolerated(0.16) benign(0.008) TCGA-A6-6138-01 11 134240244 134240244 C T GLB1L2 Missense_Mutation p.T389M 0.23 tolerated(0.13) benign(0.012) TCGA-A6-6138-01 11 17627541 17627541 G A OTOG Missense_Mutation p.G1351R 0.09 probably_damaging(0.992) TCGA-A6-6138-01 11 20648388 20648388 G T SLC6A5 Silent p.T465T 0.20 TCGA-A6-6138-01 11 31823222 31823222 C T PAX6 Missense_Mutation p.E96K 0.46 tolerated(0.23) benign(0.116) TCGA-A6-6138-01 11 404630 404630 A G PKP3 3'UTR 0.21 TCGA-A6-6138-01 11 66359034 66359034 T C CCDC87 Missense_Mutation p.N485D 0.29 tolerated(0.2) benign(0.014) TCGA-A6-6138-01 11 86209120 86209120 A G ME3 Missense_Mutation p.L197P 0.36 deleterious(0) probably_damaging(1) TCGA-A6-6138-01 12 113909168 113909168 G A LHX5 Missense_Mutation p.R46C 0.32 deleterious(0) probably_damaging(0.998) TCGA-A6-6138-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.55 deleterious(0.04) possibly_damaging(0.506) TCGA-A6-6138-01 12 46230774 46230774 G C ARID2 Missense_Mutation p.E341D 0.25 tolerated(0.09) probably_damaging(0.985) TCGA-A6-6138-01 12 53039138 53039138 C T KRT2 Missense_Mutation p.G529R 0.67 deleterious(0) unknown(0) TCGA-A6-6138-01 12 57918159 57918159 T C MBD6 Missense_Mutation p.W25R 0.09 deleterious_low_confidence(0) unknown(0) TCGA-A6-6138-01 12 62887703 62887703 G A MON2 Missense_Mutation p.E62K 0.33 tolerated(0.32) possibly_damaging(0.503) TCGA-A6-6138-01 13 102568907 102568907 C T FGF14 Intron 0.24 TCGA-A6-6138-01 13 32810288 32810288 A G FRY Missense_Mutation p.D1930G 0.60 deleterious(0) possibly_damaging(0.484) TCGA-A6-6138-01 13 39454612 39454612 T A FREM2 Silent p.G3066G 0.13 TCGA-A6-6138-01 13 76335076 76335076 A G LMO7 5'UTR 0.24 TCGA-A6-6138-01 14 105416463 105416463 C T AHNAK2 Silent p.A1775A 0.18 TCGA-A6-6138-01 15 54307240 54307240 T G UNC13C Missense_Mutation p.L714V 0.59 tolerated_low_confidence(0.22) benign(0.004) TCGA-A6-6138-01 15 54529888 54529888 G A UNC13C Silent p.L1076L 0.40 TCGA-A6-6138-01 16 2106712 2106714 TCA - TSC2 In_Frame_Del p.I240del 0.47 TCGA-A6-6138-01 16 2134500 2134500 A - TSC2 Frame_Shift_Del p.S1427Vfs*49 0.27 TCGA-A6-6138-01 16 31091576 31091576 G A ZNF646 Missense_Mutation p.A1311T 0.45 deleterious(0.04) probably_damaging(0.996) TCGA-A6-6138-01 16 3406395 3406395 G T OR2C1 Missense_Mutation p.G152V 0.47 deleterious(0) probably_damaging(1) TCGA-A6-6138-01 16 67916400 67916400 G A EDC4 Silent p.R1115R 0.14 TCGA-A6-6138-01 16 81946225 81946225 G A PLCG2 Missense_Mutation p.R653H 0.29 deleterious(0) benign(0.067) TCGA-A6-6138-01 16 87678215 87678215 G A JPH3 Missense_Mutation p.R245H 0.45 deleterious(0.04) benign(0.259) TCGA-A6-6138-01 17 1635623 1635623 C T WDR81 Missense_Mutation p.P1388S 0.49 deleterious(0) probably_damaging(0.988) TCGA-A6-6138-01 17 28549902 28549902 G A SLC6A4 Intron 0.37 TCGA-A6-6138-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.50 deleterious(0) probably_damaging(0.998) TCGA-A6-6138-01 17 8198091 8198091 C T SLC25A35 Missense_Mutation p.G12E 0.38 tolerated(0.08) probably_damaging(1) TCGA-A6-6138-01 18 19383882 19383882 T C MIB1 Silent p.C462C 0.19 TCGA-A6-6138-01 18 28991111 28991111 C T DSG4 Silent p.T704T 0.20 TCGA-A6-6138-01 18 7036080 7036080 G A LAMA1 Missense_Mutation p.A582V 0.38 deleterious(0.02) possibly_damaging(0.905) TCGA-A6-6138-01 19 19932436 19932436 G A ZNF506 5'UTR 0.47 TCGA-A6-6138-01 19 2040144 2040144 C T MKNK2 Missense_Mutation p.M381I 0.40 tolerated(0.22) benign(0) TCGA-A6-6138-01 19 20727700 20727700 A G ZNF737 Missense_Mutation p.F437L 0.08 tolerated(0.32) benign(0.145) TCGA-A6-6138-01 19 30936461 30936461 G T ZNF536 Silent p.L664L 0.34 TCGA-A6-6138-01 19 39322416 39322416 C T ECH1 5'UTR 0.33 TCGA-A6-6138-01 19 39440735 39440735 G A FBXO17 Silent p.Y75Y 0.29 TCGA-A6-6138-01 19 50919913 50919913 C T POLD1 Silent p.G1000G 0.56 TCGA-A6-6138-01 19 51919204 51919204 T A SIGLEC10 Silent p.R324R 0.18 TCGA-A6-6138-01 19 55301568 55301568 C T CTB-61M7.1 RNA 0.31 TCGA-A6-6138-01 19 57743407 57743407 C T AURKC Silent p.R37R 0.13 TCGA-A6-6138-01 19 57876406 57876406 G A TRAPPC2P1 Missense_Mutation p.E69K 0.23 tolerated(0.15) benign(0.019) TCGA-A6-6138-01 19 5923311 5923311 G A RANBP3 Missense_Mutation p.S368F 0.25 deleterious(0) probably_damaging(0.968) TCGA-A6-6138-01 1 111731396 111731396 T C DENND2D Missense_Mutation p.K343E 0.17 tolerated(0.25) benign(0.001) TCGA-A6-6138-01 1 117484584 117484584 C T PTGFRN Silent p.N99N 0.29 TCGA-A6-6138-01 1 149916174 149916174 C A OTUD7B Missense_Mutation p.G705V 0.38 tolerated_low_confidence(0.71) benign(0.328) TCGA-A6-6138-01 1 151109445 151109445 A T SEMA6C Missense_Mutation p.S288T 0.09 deleterious(0) benign(0.223) TCGA-A6-6138-01 1 152734123 152734123 C T KPRP 3'UTR 0.31 TCGA-A6-6138-01 1 158984691 158984691 C T IFI16 Missense_Mutation p.T74M 0.12 tolerated(0.12) benign(0.039) TCGA-A6-6138-01 1 169677891 169677892 - T SELL Frame_Shift_Ins p.P60Tfs*8 0.30 TCGA-A6-6138-01 1 181701627 181701627 C T CACNA1E Missense_Mutation p.A802V 0.20 tolerated(0.28) possibly_damaging(0.499) TCGA-A6-6138-01 1 223178967 223178967 G A DISP1 Missense_Mutation p.E1410K 0.33 tolerated_low_confidence(0.38) benign(0.003) TCGA-A6-6138-01 1 234743348 234743348 G A IRF2BP2 Silent p.D433D 0.40 TCGA-A6-6138-01 1 31188946 31188946 C T MATN1 Silent p.K339K 0.33 TCGA-A6-6138-01 1 35334213 35334213 G A DLGAP3 Silent p.P826P 0.19 TCGA-A6-6138-01 1 35452751 35452751 G A ZMYM6 Missense_Mutation p.T1311I 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-6138-01 1 43904393 43904393 G A SZT2 Missense_Mutation p.V2121M 0.40 deleterious(0.02) possibly_damaging(0.787) TCGA-A6-6138-01 1 70385027 70385027 G A LRRC7 Intron 0.24 TCGA-A6-6138-01 1 95538368 95538368 C T ALG14 Missense_Mutation p.M29I 0.48 tolerated(0.4) benign(0) TCGA-A6-6138-01 20 1294019 1294019 C T SDCBP2 Missense_Mutation p.G117S 0.30 deleterious(0.01) possibly_damaging(0.855) TCGA-A6-6138-01 20 2384321 2384321 C T TGM6 Silent p.N396N 0.40 TCGA-A6-6138-01 20 35060245 35060245 G A DLGAP4 Missense_Mutation p.R42H 0.19 tolerated(0.63) benign(0.04) TCGA-A6-6138-01 20 52192533 52192533 C T ZNF217 Missense_Mutation p.V924M 0.17 tolerated(0.24) benign(0.048) TCGA-A6-6138-01 20 62577003 62577003 C - UCKL1 Splice_Site p.X218_splice 0.42 TCGA-A6-6138-01 20 9376233 9376234 - A PLCB4 Frame_Shift_Ins p.E494Rfs*4 0.17 TCGA-A6-6138-01 21 27107245 27107245 C T ATP5J Intron 0.32 TCGA-A6-6138-01 21 38522404 38522404 C T TTC3 Silent p.T715T 0.32 TCGA-A6-6138-01 21 39493332 39493332 C T DSCR4 Silent p.L6L 0.33 TCGA-A6-6138-01 21 45978118 45978118 G C KRTAP10-3 Missense_Mutation p.L161V 0.26 deleterious(0.04) unknown(0) TCGA-A6-6138-01 2 114257294 114257294 G A FOXD4L1 Missense_Mutation p.S154N 0.12 deleterious(0) probably_damaging(0.997) TCGA-A6-6138-01 2 130953852 130953852 G A TUBA3E Silent p.P32P 0.33 TCGA-A6-6138-01 2 133541788 133541788 G T NCKAP5 Missense_Mutation p.P866T 0.35 deleterious(0) probably_damaging(1) TCGA-A6-6138-01 2 135738811 135738811 G A MAP3K19 Missense_Mutation p.T1167M 0.08 deleterious(0) probably_damaging(1) TCGA-A6-6138-01 2 155265519 155265519 G T GALNT13 Missense_Mutation p.Q440H 0.10 tolerated(0.43) possibly_damaging(0.765) TCGA-A6-6138-01 2 170494050 170494050 T G PPIG 3'UTR 0.43 TCGA-A6-6138-01 2 179455649 179455649 T G TTN Missense_Mutation p.K20268T 0.30 TCGA-A6-6138-01 2 206617651 206617651 C T NRP2 Missense_Mutation p.R666W 0.14 tolerated(0.11) possibly_damaging(0.809) TCGA-A6-6138-01 2 21232705 21232705 G A APOB Silent p.I2345I 0.23 TCGA-A6-6138-01 2 233346250 233346250 C T ECEL1 Missense_Mutation p.R652H 0.74 tolerated(0.39) benign(0.002) TCGA-A6-6138-01 2 241826503 241826503 C G C2orf54 Missense_Mutation p.G443A 0.09 tolerated(1) benign(0.006) TCGA-A6-6138-01 2 54119982 54119982 C T PSME4 Missense_Mutation p.G1385D 0.25 deleterious(0) probably_damaging(0.999) TCGA-A6-6138-01 2 74745514 74745514 C T DQX1 3'UTR 0.36 TCGA-A6-6138-01 3 108229400 108229400 A T MYH15 Missense_Mutation p.F13Y 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-A6-6138-01 3 115560793 115560793 G T LSAMP Missense_Mutation p.S273Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-A6-6138-01 3 14744670 14744670 C T C3orf20 Missense_Mutation p.P260L 0.14 tolerated(0.14) benign(0.002) TCGA-A6-6138-01 3 169501321 169501321 C T MYNN Missense_Mutation p.L486F 0.30 deleterious(0) probably_damaging(1) TCGA-A6-6138-01 3 180325525 180325525 C G TTC14 Missense_Mutation p.A421G 0.23 deleterious(0.04) benign(0.288) TCGA-A6-6138-01 3 194409112 194409112 G A FAM43A 3'UTR 0.24 TCGA-A6-6138-01 3 195022725 195022725 G A ACAP2 Missense_Mutation p.T432I 0.30 tolerated(0.12) possibly_damaging(0.817) TCGA-A6-6138-01 3 37035084 37035084 G A MLH1 Missense_Mutation p.V16M 0.23 deleterious(0) probably_damaging(0.98) TCGA-A6-6138-01 3 49694051 49694051 C T BSN Silent p.F2354F 0.29 TCGA-A6-6138-01 3 51982378 51982378 C T PARP3 Missense_Mutation p.P502L 0.13 deleterious(0.01) possibly_damaging(0.797) TCGA-A6-6138-01 3 52437823 52437823 G A BAP1 Silent p.N446N 0.38 TCGA-A6-6138-01 3 58092595 58092595 G C FLNB Missense_Mutation p.D646H 0.22 deleterious(0) possibly_damaging(0.824) TCGA-A6-6138-01 3 62459927 62459927 G T CADPS Nonsense_Mutation p.S1133* 0.31 TCGA-A6-6138-01 3 98237838 98237838 C A CLDND1 Missense_Mutation p.E121D 0.17 tolerated(0.44) benign(0.004) TCGA-A6-6138-01 4 119625154 119625154 A C METTL14 Missense_Mutation p.N268T 0.14 tolerated(0.16) probably_damaging(0.992) TCGA-A6-6138-01 4 146059158 146059158 G A OTUD4 Silent p.L858L 0.09 TCGA-A6-6138-01 4 187509967 187509967 G A FAT1 Missense_Mutation p.H4516Y 0.34 benign(0) TCGA-A6-6138-01 4 661770 661770 G A PDE6B Silent p.E826E 0.33 TCGA-A6-6138-01 4 8098937 8098937 T C ABLIM2 Missense_Mutation p.Q76R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6138-01 5 112175480 112175480 G T APC Nonsense_Mutation p.E1397* 0.57 TCGA-A6-6138-01 5 1216693 1216693 C T SLC6A19 Missense_Mutation p.S303L 0.32 deleterious(0) benign(0.407) TCGA-A6-6138-01 5 135388731 135388731 C T TGFBI Missense_Mutation p.A350V 0.49 tolerated(0.18) possibly_damaging(0.582) TCGA-A6-6138-01 5 140229844 140229844 C T PCDHA9 Silent p.G588G 0.34 TCGA-A6-6138-01 5 140249717 140249717 C T PCDHA11 Silent p.N343N 0.24 TCGA-A6-6138-01 5 140558959 140558959 C T PCDHB8 Silent p.N448N 0.28 TCGA-A6-6138-01 5 16685901 16685901 C T MYO10 Silent p.T1312T 0.31 TCGA-A6-6138-01 5 174194 174194 G A PLEKHG4B Silent p.R1105R 0.24 TCGA-A6-6138-01 5 38523550 38523550 G A LIFR Missense_Mutation p.R178C 0.30 deleterious(0.03) benign(0.045) TCGA-A6-6138-01 5 71492499 71492499 G A MAP1B Missense_Mutation p.R1106Q 0.24 probably_damaging(0.995) TCGA-A6-6138-01 6 127767863 127767863 C T KIAA0408 Missense_Mutation p.R534Q 0.31 tolerated(0.27) benign(0.058) TCGA-A6-6138-01 6 158919737 158919737 G A TULP4 Missense_Mutation p.R636Q 0.34 deleterious(0) benign(0.011) TCGA-A6-6138-01 6 29640657 29640657 G T ZFP57 Missense_Mutation p.P411T 0.28 tolerated(0.2) possibly_damaging(0.687) TCGA-A6-6138-01 6 31498937 31498937 G A DDX39B Nonsense_Mutation p.R339* 0.24 TCGA-A6-6138-01 6 36437848 36437848 G A KCTD20 5'UTR 0.22 TCGA-A6-6138-01 6 37613973 37613973 C T MDGA1 Splice_Site p.X742_splice 0.48 TCGA-A6-6138-01 6 41652691 41652691 G T TFEB Silent p.A359A 0.19 TCGA-A6-6138-01 6 42824916 42824916 A G GLTSCR1L Silent p.R732R 0.22 TCGA-A6-6138-01 6 46660020 46660020 G A TDRD6 Silent p.V1385V 0.32 TCGA-A6-6138-01 6 47847638 47847638 G A PTCHD4 Silent p.S314S 0.30 TCGA-A6-6138-01 6 56883325 56883325 T C BEND6 Silent p.L273L 0.38 TCGA-A6-6138-01 6 64498963 64498963 C T EYS Silent p.E2522E 0.31 TCGA-A6-6138-01 7 106508630 106508630 G A PIK3CG Silent p.P208P 0.53 TCGA-A6-6138-01 7 124532421 124532421 T G POT1 Missense_Mutation p.N8T 0.13 deleterious(0.04) benign(0.007) TCGA-A6-6138-01 7 141736707 141736707 C T MGAM Missense_Mutation p.P721S 0.27 deleterious(0) probably_damaging(0.996) TCGA-A6-6138-01 7 154863078 154863078 G A HTR5A Missense_Mutation p.V157I 0.28 tolerated(0.51) benign(0.001) TCGA-A6-6138-01 7 44797058 44797058 T G ZMIZ2 Silent p.A150A 0.18 TCGA-A6-6138-01 7 71036298 71036298 G A WBSCR17 Missense_Mutation p.V331M 0.22 deleterious(0.01) probably_damaging(0.968) TCGA-A6-6138-01 7 99746579 99746579 C T LAMTOR4 5'UTR 0.21 TCGA-A6-6138-01 8 110348418 110348418 C T ENY2 Missense_Mutation p.T23I 0.26 deleterious(0.02) possibly_damaging(0.548) TCGA-A6-6138-01 8 120843958 120843958 C T TAF2 Missense_Mutation p.V33I 0.11 deleterious(0.04) possibly_damaging(0.563) TCGA-A6-6138-01 8 1842693 1842693 C T ARHGEF10 Silent p.S465S 0.31 TCGA-A6-6138-01 8 3047483 3047483 G A CSMD1 Silent p.S1783S 0.35 TCGA-A6-6138-01 8 32505630 32505630 G T NRG1 Intron 0.40 TCGA-A6-6138-01 8 37693265 37693265 C - GPR124 Frame_Shift_Del p.V678Sfs*14 0.34 TCGA-A6-6138-01 8 51569561 51569561 T C SNTG1 Silent p.C314C 0.17 TCGA-A6-6138-01 8 6728159 6728159 A G DEFB1 3'UTR 0.18 TCGA-A6-6138-01 9 101900171 101900171 C T TGFBR1 Missense_Mutation p.A202V 0.30 deleterious(0) probably_damaging(0.997) TCGA-A6-6138-01 9 117046025 117046025 G A COL27A1 Missense_Mutation p.G1306R 0.21 probably_damaging(1) TCGA-A6-6138-01 9 117668 117668 C T FOXD4 Missense_Mutation p.S151N 0.38 deleterious(0) probably_damaging(0.997) TCGA-A6-6138-01 9 119413980 119413980 C T ASTN2 Missense_Mutation p.D916N 0.14 deleterious(0.04) unknown(0) TCGA-A6-6138-01 9 130981327 130981327 G C DNM1 Splice_Site p.X129_splice 0.20 TCGA-A6-6138-01 9 140140184 140140184 A T FAM166A Missense_Mutation p.S60T 0.34 tolerated(0.33) benign(0.026) TCGA-A6-6138-01 9 74315593 74315593 T C TMEM2 Silent p.Q1114Q 0.27 TCGA-A6-6138-01 9 94479590 94479590 G A ROR2 Silent p.R688R 0.27 TCGA-A6-6138-01 9 95258463 95258463 T C ECM2 3'UTR 0.38 TCGA-A6-6138-01 X 120008831 120008831 C T CT47B1 Missense_Mutation p.A232T 0.61 tolerated(0.38) unknown(0) TCGA-A6-6138-01 Y 16942083 16942083 G A NLGN4Y Missense_Mutation p.D429N 0.57 tolerated(0.11) probably_damaging(0.981) TCGA-A6-6142-01 10 111640663 111640663 G A XPNPEP1 Silent p.T356T 0.09 TCGA-A6-6142-01 10 114920422 114920422 C T TCF7L2 Nonsense_Mutation p.R455* 0.22 TCGA-A6-6142-01 10 120796639 120796639 C T EIF3A Missense_Mutation p.R1304H 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-A6-6142-01 10 43088564 43088564 T G ZNF33B Missense_Mutation p.N612H 0.18 deleterious(0.01) possibly_damaging(0.701) TCGA-A6-6142-01 10 44140148 44140148 T C ZNF32 Missense_Mutation p.K58E 0.36 tolerated_low_confidence(0.12) benign(0.125) TCGA-A6-6142-01 10 50824073 50824073 G A CHAT Intron 0.17 TCGA-A6-6142-01 11 118374060 118374060 G A KMT2A Missense_Mutation p.V2485I 0.28 benign(0.002) TCGA-A6-6142-01 11 122733180 122733180 G C CRTAM Missense_Mutation p.E221Q 0.09 tolerated(1) benign(0) TCGA-A6-6142-01 11 126283898 126283898 C T ST3GAL4 Missense_Mutation p.R320W 0.31 deleterious(0) probably_damaging(0.985) TCGA-A6-6142-01 11 128709220 128709220 C A KCNJ1 Missense_Mutation p.A326S 0.20 tolerated(0.69) benign(0.356) TCGA-A6-6142-01 11 5510241 5510241 C T OR52D1 Missense_Mutation p.A102V 0.23 tolerated(0.08) benign(0.242) TCGA-A6-6142-01 11 59369291 59369291 C A OSBP Missense_Mutation p.M281I 0.14 deleterious(0.03) benign(0.009) TCGA-A6-6142-01 11 74559225 74559225 G A XRRA1 Missense_Mutation p.R547C 0.70 tolerated(0.06) benign(0.002) TCGA-A6-6142-01 11 94532912 94532912 G A AMOTL1 Missense_Mutation p.E186K 0.28 deleterious(0) probably_damaging(0.991) TCGA-A6-6142-01 12 102576394 102576394 A - PARPBP Frame_Shift_Del p.I420Lfs*3 0.33 TCGA-A6-6142-01 12 117660540 117660540 G A NOS1 Missense_Mutation p.R1353W 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6142-01 12 122620113 122620113 C T MLXIP Silent p.P644P 0.10 TCGA-A6-6142-01 12 6700879 6700879 C T CHD4 Missense_Mutation p.R1068H 0.09 deleterious(0) possibly_damaging(0.84) TCGA-A6-6142-01 12 80890165 80890165 A T PTPRQ Missense_Mutation p.L705F 0.24 tolerated(0.59) benign(0.018) TCGA-A6-6142-01 12 91366664 91366664 G C EPYC Missense_Mutation p.T145S 0.15 deleterious(0.01) benign(0.145) TCGA-A6-6142-01 12 93969009 93969009 T C SOCS2 3'UTR 0.32 TCGA-A6-6142-01 14 101195331 101195331 C A DLK1 Missense_Mutation p.L64I 0.15 tolerated(0.07) benign(0.04) TCGA-A6-6142-01 14 104123940 104123940 C T KLC1 Missense_Mutation p.R107C 0.45 deleterious(0) probably_damaging(0.992) TCGA-A6-6142-01 14 52898984 52898984 C A TXNDC16 3'UTR 0.11 TCGA-A6-6142-01 15 22868911 22868911 A C TUBGCP5 Missense_Mutation p.K928T 0.26 tolerated(0.17) benign(0.292) TCGA-A6-6142-01 15 33603210 33603210 C T RYR3 5'UTR 0.45 TCGA-A6-6142-01 15 33872188 33872188 G C RYR3 Missense_Mutation p.R427P 0.24 benign(0.001) TCGA-A6-6142-01 15 43891083 43891083 G A CKMT1B Missense_Mutation p.G357E 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6142-01 15 62219325 62219325 A G VPS13C Missense_Mutation p.F2161L 0.07 deleterious(0.01) possibly_damaging(0.716) TCGA-A6-6142-01 15 75772252 75772252 C T PTPN9 Missense_Mutation p.D356N 0.18 deleterious(0.03) possibly_damaging(0.795) TCGA-A6-6142-01 16 1841565 1841565 G A IGFALS Missense_Mutation p.T323M 0.21 deleterious(0) probably_damaging(0.977) TCGA-A6-6142-01 16 2160717 2160717 G A PKD1 Missense_Mutation p.P1484L 0.17 benign(0.009) TCGA-A6-6142-01 16 21739589 21739589 G T OTOA Missense_Mutation p.V682L 0.31 tolerated(0.12) benign(0.076) TCGA-A6-6142-01 16 27760972 27760972 C T KIAA0556 Silent p.H897H 0.13 TCGA-A6-6142-01 16 56672601 56672601 A G MT1A 5'UTR 0.09 TCGA-A6-6142-01 16 67912502 67912502 T A EDC4 Nonsense_Mutation p.C384* 0.34 TCGA-A6-6142-01 16 77359845 77359845 A - ADAMTS18 Frame_Shift_Del p.R651Gfs*51 0.27 TCGA-A6-6142-01 17 11593486 11593486 C A DNAH9 Missense_Mutation p.F1449L 0.17 benign(0.074) TCGA-A6-6142-01 17 57348306 57348306 A G GDPD1 Silent p.E240E 0.32 TCGA-A6-6142-01 17 57351187 57351187 A G GDPD1 3'UTR 0.41 TCGA-A6-6142-01 17 72440044 72440044 A C GPRC5C Missense_Mutation p.K425T 0.25 deleterious(0) possibly_damaging(0.772) TCGA-A6-6142-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.31 deleterious(0) probably_damaging(1) TCGA-A6-6142-01 17 7578407 7578407 G A TP53 Missense_Mutation p.R175C 0.29 deleterious(0) probably_damaging(0.993) TCGA-A6-6142-01 17 78185849 78185849 C T SGSH Intron 0.31 TCGA-A6-6142-01 18 19154337 19154337 T C ESCO1 Silent p.K156K 0.30 TCGA-A6-6142-01 18 29432425 29432429 ATGAT - TRAPPC8 Frame_Shift_Del p.I1181Lfs*4 0.26 TCGA-A6-6142-01 19 15763689 15763689 C A CYP4F3 Missense_Mutation p.P348T 0.34 deleterious(0.01) possibly_damaging(0.724) TCGA-A6-6142-01 19 39003123 39003123 C T RYR1 Silent p.L3158L 0.42 TCGA-A6-6142-01 19 40883710 40883710 C T PLD3 Silent p.P401P 0.24 TCGA-A6-6142-01 19 51301774 51301774 G T C19orf48 5'UTR 0.14 TCGA-A6-6142-01 19 5456201 5456201 C T ZNRF4 Silent p.H233H 0.44 TCGA-A6-6142-01 19 56369610 56369610 C T NLRP4 Missense_Mutation p.P284L 0.27 tolerated(0.75) benign(0.018) TCGA-A6-6142-01 19 7754030 7754030 G A FCER2 3'UTR 0.20 TCGA-A6-6142-01 1 110765824 110765824 C T KCNC4 Missense_Mutation p.T306M 0.33 deleterious(0.01) possibly_damaging(0.908) TCGA-A6-6142-01 1 120277963 120277963 G A PHGDH Missense_Mutation p.R230H 0.24 tolerated(0.05) benign(0.029) TCGA-A6-6142-01 1 12820964 12820964 G A C1orf158 3'UTR 0.38 TCGA-A6-6142-01 1 152538689 152538689 G A LCE3E 5'UTR 0.31 TCGA-A6-6142-01 1 152785167 152785167 G A LCE1B Missense_Mutation p.R82H 0.34 tolerated_low_confidence(0.31) unknown(0) TCGA-A6-6142-01 1 167385260 167385260 T A POU2F1 3'UTR 0.12 TCGA-A6-6142-01 1 167385262 167385262 T G POU2F1 3'UTR 0.10 TCGA-A6-6142-01 1 167385263 167385263 G T POU2F1 3'UTR 0.13 TCGA-A6-6142-01 1 184686099 184686099 T C EDEM3 Silent p.E431E 0.40 TCGA-A6-6142-01 1 190129824 190129824 T A BRINP3 Missense_Mutation p.Q386H 0.32 deleterious(0.02) benign(0.021) TCGA-A6-6142-01 1 228487671 228487671 G A OBSCN Silent p.A4521A 0.39 TCGA-A6-6142-01 1 32193840 32193840 G A BAI2 Silent p.H1486H 0.16 TCGA-A6-6142-01 1 33960840 33960840 A G ZSCAN20 Missense_Mutation p.K966E 0.37 deleterious(0) probably_damaging(0.999) TCGA-A6-6142-01 1 74930515 74930515 C T FPGT-TNNI3K Intron 0.35 TCGA-A6-6142-01 1 7904007 7904007 A G UTS2 3'Flank 0.10 TCGA-A6-6142-01 20 23029825 23029825 C T THBD Missense_Mutation p.R106H 0.19 deleterious(0) benign(0.122) TCGA-A6-6142-01 20 30194225 30194226 - TAT ID1 3'UTR 0.16 TCGA-A6-6142-01 20 44486462 44486462 G A ZSWIM3 5'UTR 0.16 TCGA-A6-6142-01 21 37600029 37600029 G A DOPEY2 Missense_Mutation p.G507S 0.27 tolerated(0.43) benign(0.004) TCGA-A6-6142-01 2 162881441 162881441 T A DPP4 Missense_Mutation p.Y299F 0.11 deleterious(0.02) probably_damaging(0.984) TCGA-A6-6142-01 2 165997468 165997468 C T SCN3A Missense_Mutation p.R571H 0.29 tolerated(0.09) probably_damaging(0.999) TCGA-A6-6142-01 2 5836399 5836399 G A SOX11 3'UTR 0.36 TCGA-A6-6142-01 2 70903900 70903900 C T ADD2 Intron 0.35 TCGA-A6-6142-01 2 88991417 88991417 C T RPIA Silent p.S67S 0.22 TCGA-A6-6142-01 2 99978207 99978207 A G EIF5B Silent p.V281V 0.31 TCGA-A6-6142-01 3 131300463 131300465 TTC - CPNE4 In_Frame_Del p.K275del 0.25 TCGA-A6-6142-01 3 193031953 193031953 C T ATP13A5 Missense_Mutation p.A730T 0.30 deleterious(0) probably_damaging(0.99) TCGA-A6-6142-01 3 38938517 38938517 G A SCN11A Missense_Mutation p.P741L 0.28 tolerated(0.05) benign(0.007) TCGA-A6-6142-01 3 47960236 47960236 C T MAP4 Missense_Mutation p.V209I 0.35 tolerated(0.95) benign(0.003) TCGA-A6-6142-01 4 104074408 104074408 C T CENPE Splice_Site p.X1012_splice 0.39 TCGA-A6-6142-01 4 121737990 121737990 G A PRDM5 Missense_Mutation p.S247L 0.13 tolerated(0.08) benign(0.01) TCGA-A6-6142-01 4 123270710 123270710 G A KIAA1109 Missense_Mutation p.G4515D 0.34 probably_damaging(0.999) TCGA-A6-6142-01 4 126240717 126240717 C T FAT4 Nonsense_Mutation p.Q1051* 0.13 TCGA-A6-6142-01 4 153244092 153244092 G A FBXW7 Missense_Mutation p.R689W 0.42 deleterious(0) probably_damaging(0.999) TCGA-A6-6142-01 4 178897079 178897079 T C LINC01098 Silent p.Y94Y 0.19 TCGA-A6-6142-01 4 184210622 184210622 T G WWC2 Missense_Mutation p.L1073R 0.18 deleterious(0) probably_damaging(0.999) TCGA-A6-6142-01 4 25315715 25315715 C T ZCCHC4 Missense_Mutation p.R59W 0.15 deleterious(0.05) probably_damaging(0.965) TCGA-A6-6142-01 4 3478223 3478223 C T DOK7 Silent p.A162A 0.46 TCGA-A6-6142-01 5 110443115 110443115 A G WDR36 Missense_Mutation p.K491E 0.09 tolerated(0.21) benign(0.008) TCGA-A6-6142-01 5 112174117 112174117 T - APC Frame_Shift_Del p.S943Qfs*12 0.24 TCGA-A6-6142-01 5 112175507 112175507 C T APC Nonsense_Mutation p.Q1406* 0.18 TCGA-A6-6142-01 5 140998375 140998375 G C DIAPH1 Missense_Mutation p.S36C 0.29 unknown(0) TCGA-A6-6142-01 5 26988352 26988352 C A CDH9 Missense_Mutation p.S30I 0.33 tolerated(0.12) benign(0) TCGA-A6-6142-01 5 6668541 6668541 T C SRD5A1 3'UTR 0.38 TCGA-A6-6142-01 5 79031447 79031447 G A CMYA5 Missense_Mutation p.E2287K 0.09 benign(0.048) TCGA-A6-6142-01 5 88027607 88027607 T C MEF2C Missense_Mutation p.N268S 0.08 tolerated(1) benign(0.108) TCGA-A6-6142-01 6 136472384 136472384 C T PDE7B Nonsense_Mutation p.R157* 0.23 TCGA-A6-6142-01 6 26368405 26368405 G A BTN3A2 Splice_Site 0.23 TCGA-A6-6142-01 6 32037587 32037587 C T TNXB Missense_Mutation p.R1777H 0.30 probably_damaging(0.995) TCGA-A6-6142-01 6 32410347 32410347 C T HLA-DRA Missense_Mutation p.R69W 0.14 tolerated(0.09) possibly_damaging(0.604) TCGA-A6-6142-01 6 35289180 35289180 A - DEF6 Frame_Shift_Del p.N631Ifs*5 0.28 TCGA-A6-6142-01 6 52615313 52615313 T G GSTA2 3'UTR 0.11 TCGA-A6-6142-01 6 64394875 64394875 A G PHF3 Missense_Mutation p.K418E 0.26 tolerated_low_confidence(0.24) benign(0.004) TCGA-A6-6142-01 6 74104798 74104798 C T DDX43 Missense_Mutation p.P57L 0.22 tolerated(0.72) benign(0.001) TCGA-A6-6142-01 6 84234218 84234218 G A PRSS35 Missense_Mutation p.R353H 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-A6-6142-01 6 90604877 90604877 A C GJA10 Silent p.I230I 0.12 TCGA-A6-6142-01 7 102978174 102978174 A T DNAJC2 Intron 0.07 TCGA-A6-6142-01 7 121944207 121944207 C A FEZF1 Silent p.P95P 0.41 TCGA-A6-6142-01 7 91708706 91708706 A G AKAP9 Missense_Mutation p.N2420S 0.25 benign(0.02) TCGA-A6-6142-01 8 11839853 11839853 G A DEFB135 Silent p.L8L 0.39 TCGA-A6-6142-01 8 37986403 37986403 A T ASH2L Silent p.G487G 0.46 TCGA-A6-6142-01 8 77775547 77775547 G T ZFHX4 Silent p.V3199V 0.14 TCGA-A6-6142-01 9 119567956 119567956 C T ASTN2 Missense_Mutation p.R733Q 0.53 tolerated(0.25) unknown(0) TCGA-A6-6142-01 9 16419228 16419228 G T BNC2 Nonsense_Mutation p.S1020* 0.25 TCGA-A6-6142-01 9 5300258 5300258 A G RLN2 Missense_Mutation p.I133T 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-A6-6142-01 9 66466193 66466193 T A RP11-262H14.1 RNA 0.15 TCGA-A6-6142-01 X 1321372 1321372 G A CRLF2 Missense_Mutation p.S128L 0.13 tolerated(0.29) benign(0.005) TCGA-A6-6142-01 X 142795586 142795586 G T SPANXN2 Missense_Mutation p.P31Q 0.11 tolerated_low_confidence(0.05) probably_damaging(0.977) TCGA-A6-6142-01 X 144906955 144906955 T C SLITRK2 3'UTR 0.06 TCGA-A6-6142-01 X 48547125 48547125 G A WAS Silent p.K336K 0.05 TCGA-A6-6142-01 X 75397738 75397738 A G PBDC1 Missense_Mutation p.M233V 0.11 tolerated_low_confidence(0.2) benign(0.019) TCGA-A6-6648-01 10 25883155 25883155 A T GPR158 Intron 0.21 TCGA-A6-6648-01 11 128709971 128709971 G C KCNJ1 Silent p.L75L 0.37 TCGA-A6-6648-01 11 134014175 134014175 C A JAM3 Missense_Mutation p.S99Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-A6-6648-01 11 134014176 134014176 C T JAM3 Silent p.S99S 0.28 TCGA-A6-6648-01 11 22384370 22384370 C T SLC17A6 Silent p.Y249Y 0.30 TCGA-A6-6648-01 11 27016434 27016434 C T FIBIN Missense_Mutation p.R121W 0.39 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-A6-6648-01 11 55579116 55579116 C G OR5L1 Silent p.P58P 0.23 TCGA-A6-6648-01 12 40714897 40714897 C T LRRK2 Nonsense_Mutation p.R1693* 0.11 TCGA-A6-6648-01 12 48190016 48190016 C T HDAC7 Missense_Mutation p.G257S 0.19 tolerated(0.3) benign(0.326) TCGA-A6-6648-01 12 56233427 56233427 G A MMP19 Missense_Mutation p.R207C 0.35 deleterious(0) probably_damaging(0.984) TCGA-A6-6648-01 12 57574514 57574514 C T LRP1 Silent p.G1817G 0.41 TCGA-A6-6648-01 12 89745724 89745724 G T DUSP6 Missense_Mutation p.N31K 0.24 tolerated(0.91) benign(0.012) TCGA-A6-6648-01 14 100604135 100604135 T C EVL Missense_Mutation p.S364P 0.15 deleterious(0.03) benign(0.011) TCGA-A6-6648-01 14 21827764 21827764 G A SUPT16H Missense_Mutation p.A727V 0.19 deleterious(0.05) benign(0.111) TCGA-A6-6648-01 14 23870000 23870000 C T MYH6 Missense_Mutation p.R443H 0.38 deleterious(0.01) probably_damaging(0.917) TCGA-A6-6648-01 14 88945416 88945416 A G PTPN21 Missense_Mutation p.W787R 0.09 tolerated_low_confidence(0.38) benign(0) TCGA-A6-6648-01 15 23205097 23205097 C T WHAMMP3 RNA 0.18 TCGA-A6-6648-01 15 27193280 27193280 G A GABRA5 Missense_Mutation p.R430Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-6648-01 15 31329970 31329970 C T TRPM1 Missense_Mutation p.G856R 0.19 tolerated(0.11) probably_damaging(0.947) TCGA-A6-6648-01 15 31341667 31341667 G A TRPM1 Missense_Mutation p.R512C 0.23 deleterious(0) probably_damaging(1) TCGA-A6-6648-01 15 52338664 52338664 G A MAPK6 Missense_Mutation p.E3K 0.30 deleterious(0.01) possibly_damaging(0.76) TCGA-A6-6648-01 15 75047341 75047341 A T CYP1A2 Missense_Mutation p.K488I 0.17 tolerated(0.07) benign(0.249) TCGA-A6-6648-01 15 85147194 85147194 G A ZSCAN2 Silent p.P12P 0.31 TCGA-A6-6648-01 15 89442930 89442930 G A MFGE8 Missense_Mutation p.A328V 0.41 tolerated(0.49) benign(0.002) TCGA-A6-6648-01 16 2732704 2732704 G A KCTD5 Missense_Mutation p.G52D 0.26 deleterious(0) probably_damaging(0.995) TCGA-A6-6648-01 16 53524231 53524231 A C RBL2 3'UTR 0.48 TCGA-A6-6648-01 16 53726239 53726239 T A RPGRIP1L Nonsense_Mutation p.K90* 0.61 TCGA-A6-6648-01 16 83712034 83712034 G A CDH13 Silent p.T549T 0.55 TCGA-A6-6648-01 17 2195908 2195908 G A SMG6 Nonsense_Mutation p.Q759* 0.17 TCGA-A6-6648-01 17 30814967 30814967 C A CDK5R1 Missense_Mutation p.P110Q 0.42 tolerated(0.72) benign(0.139) TCGA-A6-6648-01 17 43343906 43343906 T C SPATA32 5'Flank 0.23 TCGA-A6-6648-01 17 74278147 74278147 G A QRICH2 Missense_Mutation p.T1188M 0.52 deleterious(0) probably_damaging(0.988) TCGA-A6-6648-01 17 74568775 74568775 T A ST6GALNAC2 Nonsense_Mutation p.K205* 0.16 TCGA-A6-6648-01 17 79899610 79899610 C T MYADML2 Missense_Mutation p.S3N 0.69 deleterious_low_confidence(0.02) benign(0.273) TCGA-A6-6648-01 19 11598285 11598285 C T ZNF653 Silent p.T331T 0.17 TCGA-A6-6648-01 19 12125832 12125832 G A ZNF433 Missense_Mutation p.P617L 0.16 deleterious(0.03) possibly_damaging(0.746) TCGA-A6-6648-01 19 16986967 16986967 C T SIN3B Silent p.C930C 0.48 TCGA-A6-6648-01 19 17396385 17396385 C T ANKLE1 Missense_Mutation p.R508W 0.25 tolerated(0.09) benign(0.004) TCGA-A6-6648-01 19 17951082 17951082 C T JAK3 Missense_Mutation p.S404N 0.31 deleterious(0) probably_damaging(0.965) TCGA-A6-6648-01 19 19758407 19758407 C T ATP13A1 Splice_Site p.X931_splice 0.21 TCGA-A6-6648-01 19 2834437 2834437 C T ZNF554 Missense_Mutation p.H402Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-A6-6648-01 19 36831201 36831201 C T ZFP14 Silent p.K509K 0.30 TCGA-A6-6648-01 19 55543572 55543572 C T GP6 Missense_Mutation p.R87H 0.26 tolerated_low_confidence(0.08) benign(0.174) TCGA-A6-6648-01 19 9056935 9056935 T C MUC16 Missense_Mutation p.K10171E 0.22 benign(0.007) TCGA-A6-6648-01 1 103379940 103379940 C G COL11A1 Missense_Mutation p.D1316H 0.24 unknown(0) TCGA-A6-6648-01 1 147119247 147119247 A G ACP6 Missense_Mutation p.M422T 0.12 tolerated(0.35) benign(0.001) TCGA-A6-6648-01 1 158912140 158912140 A G PYHIN1 Missense_Mutation p.H318R 0.11 tolerated(0.1) possibly_damaging(0.717) TCGA-A6-6648-01 1 15901280 15901280 G A AGMAT Silent p.V319V 0.51 TCGA-A6-6648-01 1 237711848 237711848 G A RYR2 Silent p.A1008A 0.19 TCGA-A6-6648-01 1 248084685 248084685 G A OR2T8 Silent p.A122A 0.14 TCGA-A6-6648-01 1 43241028 43241028 C T C1orf50 Missense_Mutation p.P188L 0.38 tolerated_low_confidence(0.08) benign(0.079) TCGA-A6-6648-01 1 65139131 65139131 T C CACHD1 Missense_Mutation p.F853S 0.37 deleterious(0) possibly_damaging(0.521) TCGA-A6-6648-01 20 32232324 32232324 G A CBFA2T2 Missense_Mutation p.G563S 0.09 tolerated(0.36) benign(0.001) TCGA-A6-6648-01 20 32441478 32441478 G A CHMP4B 3'UTR 0.64 TCGA-A6-6648-01 20 43615827 43615827 T C STK4 Missense_Mutation p.Y139H 0.10 deleterious(0) probably_damaging(0.992) TCGA-A6-6648-01 20 45212209 45212209 A G SLC13A3 Splice_Site p.X407_splice 0.13 TCGA-A6-6648-01 20 47614755 47614755 G A ARFGEF2 Missense_Mutation p.D1083N 0.14 tolerated(0.15) benign(0.302) TCGA-A6-6648-01 20 60921800 60921800 G A LAMA5 Missense_Mutation p.R377C 0.68 probably_damaging(0.985) TCGA-A6-6648-01 20 61488874 61488874 C T TCFL5 Missense_Mutation p.A371T 0.18 tolerated(0.19) benign(0.011) TCGA-A6-6648-01 2 111416093 111416093 G A BUB1 Silent p.F470F 0.19 TCGA-A6-6648-01 2 152354774 152354774 C A NEB Silent p.S8069S 0.18 TCGA-A6-6648-01 2 167055009 167055009 A T SCN9A 3'UTR 0.13 TCGA-A6-6648-01 2 27277614 27277614 G A AGBL5 Missense_Mutation p.R223H 0.10 deleterious(0) probably_damaging(0.99) TCGA-A6-6648-01 2 3217986 3217986 T G TSSC1 Missense_Mutation p.K150N 0.24 deleterious(0.05) probably_damaging(0.95) TCGA-A6-6648-01 2 68691270 68691270 C T FBXO48 3'UTR 0.10 TCGA-A6-6648-01 2 8870908 8870908 T A KIDINS220 Missense_Mutation p.H1753L 0.17 tolerated_low_confidence(0.55) benign(0.001) TCGA-A6-6648-01 3 133119192 133119192 C T BFSP2 Missense_Mutation p.R89W 0.21 tolerated(0.08) benign(0.081) TCGA-A6-6648-01 3 138763578 138763578 C T PRR23C 5'UTR 0.41 TCGA-A6-6648-01 3 142232353 142232355 TCT - ATR In_Frame_Del p.E1543del 0.22 TCGA-A6-6648-01 3 18390815 18390815 C G SATB1 Missense_Mutation p.E745D 0.33 tolerated(0.38) benign(0.013) TCGA-A6-6648-01 3 195495954 195495954 C T MUC4 Missense_Mutation p.G4490S 0.53 probably_damaging(0.983) TCGA-A6-6648-01 3 66436908 66436908 C T LRIG1 Intron 0.44 TCGA-A6-6648-01 3 68788281 68788281 A G FAM19A4 Missense_Mutation p.L119P 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-6648-01 4 23797453 23797453 G A PPARGC1A Missense_Mutation p.R797C 0.27 deleterious(0) unknown(0) TCGA-A6-6648-01 4 48169971 48169971 C T TEC Splice_Site p.X166_splice 0.54 TCGA-A6-6648-01 4 52861327 52861327 A - LRRC66 Frame_Shift_Del p.S621Lfs*6 0.25 TCGA-A6-6648-01 4 5862769 5862769 G A CRMP1 Silent p.G213G 0.30 TCGA-A6-6648-01 4 70346533 70346533 C T UGT2B4 Missense_Mutation p.R469H 0.12 deleterious(0.04) benign(0.159) TCGA-A6-6648-01 4 89318070 89318070 A G HERC6 Missense_Mutation p.T319A 0.11 tolerated(0.34) benign(0.006) TCGA-A6-6648-01 5 112175221 112175221 G - APC Frame_Shift_Del p.I1311Lfs*10 0.38 TCGA-A6-6648-01 5 140202850 140202850 G A PCDHA5 Missense_Mutation p.R497Q 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.769) TCGA-A6-6648-01 5 140229433 140229433 C T PCDHA9 Silent p.N451N 0.31 TCGA-A6-6648-01 5 140559169 140559169 G A PCDHB8 Silent p.R518R 0.24 TCGA-A6-6648-01 5 140794980 140794980 C T PCDHGA10 Silent p.G746G 0.17 TCGA-A6-6648-01 5 140871039 140871039 G T PCDHGC5 Missense_Mutation p.Q744H 0.38 tolerated(0.49) benign(0.007) TCGA-A6-6648-01 5 64466503 64466503 G A ADAMTS6 Missense_Mutation p.P1062L 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-A6-6648-01 6 124979544 124979544 C A NKAIN2 Intron 0.41 TCGA-A6-6648-01 6 136901528 136901528 C T MAP3K5 Missense_Mutation p.R1143Q 0.42 deleterious(0) probably_damaging(0.995) TCGA-A6-6648-01 6 143094305 143094305 T G HIVEP2 Missense_Mutation p.Q524P 0.17 tolerated(0.19) benign(0) TCGA-A6-6648-01 6 152784585 152784585 A G SYNE1 Missense_Mutation p.L667P 0.19 probably_damaging(0.995) TCGA-A6-6648-01 6 153043059 153043059 C T MYCT1 Missense_Mutation p.R127C 0.42 deleterious(0) probably_damaging(0.999) TCGA-A6-6648-01 6 154360365 154360365 C T OPRM1 Missense_Mutation p.L24F 0.44 unknown(0) TCGA-A6-6648-01 6 24532357 24532359 GAG - ALDH5A1 In_Frame_Del p.E467del 0.41 TCGA-A6-6648-01 6 30594664 30594664 T G ATAT1 5'UTR 0.26 TCGA-A6-6648-01 6 42200465 42200465 C T TRERF1 Missense_Mutation p.G1078S 0.34 deleterious(0) possibly_damaging(0.862) TCGA-A6-6648-01 6 43005604 43005604 C T CUL7 Missense_Mutation p.R1724Q 0.38 tolerated(0.15) benign(0.053) TCGA-A6-6648-01 7 1484828 1484828 T C MICALL2 Missense_Mutation p.N293S 0.14 tolerated(0.13) benign(0.038) TCGA-A6-6648-01 7 150938738 150938738 G A SMARCD3 Missense_Mutation p.P260L 0.25 deleterious(0) probably_damaging(0.996) TCGA-A6-6648-01 7 157931092 157931092 G A PTPRN2 Silent p.G342G 0.30 TCGA-A6-6648-01 7 18687445 18687445 C T HDAC9 Missense_Mutation p.T358M 0.40 tolerated(0.13) possibly_damaging(0.595) TCGA-A6-6648-01 7 21789917 21789917 G A DNAH11 Missense_Mutation p.G2966S 0.30 probably_damaging(0.996) TCGA-A6-6648-01 7 45003740 45003740 G A MYO1G Missense_Mutation p.R885W 0.28 deleterious(0.01) probably_damaging(0.956) TCGA-A6-6648-01 7 50685790 50685790 C T GRB10 Missense_Mutation p.G275D 0.10 tolerated(0.18) benign(0.032) TCGA-A6-6648-01 7 83590914 83590920 GTGTCAT - SEMA3A Frame_Shift_Del p.M695Lfs*81 0.15 TCGA-A6-6648-01 8 131862018 131862018 G T ADCY8 Missense_Mutation p.L748M 0.47 tolerated(0.07) benign(0.004) TCGA-A6-6648-01 8 13425120 13425120 C T C8orf48 Missense_Mutation p.A207V 0.22 deleterious(0) probably_damaging(0.955) TCGA-A6-6648-01 8 29195936 29195936 C A DUSP4 Missense_Mutation p.G221V 0.35 deleterious(0) probably_damaging(0.982) TCGA-A6-6648-01 8 38124821 38124821 C T PPAPDC1B Missense_Mutation p.E143K 0.28 deleterious(0) probably_damaging(0.934) TCGA-A6-6648-01 8 55540583 55540583 A G RP1 Missense_Mutation p.K1381E 0.51 tolerated(0.21) benign(0.03) TCGA-A6-6648-01 8 65527680 65527680 G A CYP7B1 Silent p.D320D 0.12 TCGA-A6-6648-01 8 97172828 97172828 G A GDF6 Silent p.S31S 0.52 TCGA-A6-6648-01 9 125437721 125437721 C G OR1L3 Missense_Mutation p.L105V 0.36 tolerated(0.34) benign(0.175) TCGA-A6-6648-01 9 136338650 136338650 T A SLC2A6 Missense_Mutation p.N370I 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6648-01 9 35560423 35560423 G A RUSC2 Nonsense_Mutation p.W1262* 0.53 TCGA-A6-6648-01 9 73152116 73152116 C T TRPM3 Missense_Mutation p.A1293T 0.23 tolerated(0.52) benign(0.407) TCGA-A6-6648-01 9 91993552 91993552 G C SEMA4D 3'UTR 0.63 TCGA-A6-6648-01 9 99150536 99150536 C T ZNF367 Missense_Mutation p.A346T 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A6-6648-01 X 133547639 133547639 C T PHF6 Silent p.T179T 0.31 TCGA-A6-6648-01 X 1714412 1714412 C T AKAP17A Nonsense_Mutation p.R300* 0.23 TCGA-A6-6648-01 X 31514944 31514944 G A DMD Silent p.G2836G 0.24 TCGA-A6-6648-01 X 36379525 36379525 G A CXorf30 Missense_Mutation p.A424T 0.22 tolerated(0.25) benign(0.102) TCGA-A6-6648-01 X 50053286 50053286 C A CCNB3 Missense_Mutation p.S706Y 0.34 tolerated(1) possibly_damaging(0.893) TCGA-A6-6649-01 10 108389038 108389038 C T SORCS1 Missense_Mutation p.V862M 0.39 deleterious(0.02) probably_damaging(0.938) TCGA-A6-6649-01 10 124345756 124345756 C T DMBT1 Missense_Mutation p.A547V 0.18 deleterious(0.03) unknown(0) TCGA-A6-6649-01 10 13275576 13275576 C T UCMA Missense_Mutation p.R61H 0.30 deleterious(0.04) benign(0.201) TCGA-A6-6649-01 10 134713131 134713131 G A TTC40 Silent p.A988A 0.24 TCGA-A6-6649-01 10 88476197 88476197 C T LDB3 Missense_Mutation p.P454S 0.11 tolerated(0.27) probably_damaging(0.979) TCGA-A6-6649-01 11 102988559 102988559 A G DYNC2H1 Silent p.E322E 0.07 TCGA-A6-6649-01 11 123489476 123489476 C T GRAMD1B Silent p.L659L 0.09 TCGA-A6-6649-01 11 124790344 124790344 C T HEPACAM 3'UTR 0.09 TCGA-A6-6649-01 11 66102272 66102272 C T RIN1 Missense_Mutation p.S333N 0.17 tolerated(0.09) benign(0.017) TCGA-A6-6649-01 11 73008374 73008374 G A P2RY6 Missense_Mutation p.V271I 0.50 tolerated(0.17) benign(0.017) TCGA-A6-6649-01 11 73022579 73022579 T C ARHGEF17 Missense_Mutation p.F966L 0.44 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-A6-6649-01 12 112321467 112321467 G A MAPKAPK5 Missense_Mutation p.R248Q 0.40 tolerated(0.4) benign(0.167) TCGA-A6-6649-01 12 12240292 12240292 C T BCL2L14 Silent p.H193H 0.10 TCGA-A6-6649-01 12 53590465 53590465 G A ITGB7 Silent p.D238D 0.29 TCGA-A6-6649-01 12 7548753 7548753 C T CD163L1 Missense_Mutation p.R663K 0.09 tolerated(1) benign(0.048) TCGA-A6-6649-01 12 7593822 7593822 G A CD163L1 Missense_Mutation p.H18Y 0.38 tolerated_low_confidence(0.08) benign(0.403) TCGA-A6-6649-01 12 7632554 7632554 G T CD163 Missense_Mutation p.L1128I 0.10 tolerated(0.1) benign(0.42) TCGA-A6-6649-01 12 80890207 80890207 C G PTPRQ Missense_Mutation p.N719K 0.10 tolerated(0.08) benign(0.096) TCGA-A6-6649-01 13 84454919 84454919 C T SLITRK1 Missense_Mutation p.E242K 0.39 deleterious(0) probably_damaging(0.988) TCGA-A6-6649-01 14 21991256 21991256 G A SALL2 Missense_Mutation p.P869L 0.28 tolerated(0.33) benign(0.001) TCGA-A6-6649-01 14 71575382 71575382 C G PCNX Silent p.A2121A 0.33 TCGA-A6-6649-01 15 24926832 24926832 C A NPAP1 3'UTR 0.18 TCGA-A6-6649-01 15 35830573 35830573 G A DPH6 Nonsense_Mutation p.R72* 0.27 TCGA-A6-6649-01 15 53049845 53049845 G A ONECUT1 Silent p.N435N 0.07 TCGA-A6-6649-01 15 83434680 83434680 T C FSD2 Missense_Mutation p.R553G 0.08 deleterious(0) probably_damaging(0.916) TCGA-A6-6649-01 15 84558990 84558990 G T ADAMTSL3 Missense_Mutation p.C401F 0.23 deleterious(0) possibly_damaging(0.831) TCGA-A6-6649-01 15 85384116 85384116 C T ALPK3 Missense_Mutation p.R738W 0.35 deleterious_low_confidence(0.03) benign(0.037) TCGA-A6-6649-01 15 89383392 89383392 G A ACAN Missense_Mutation p.G202S 0.21 deleterious(0) unknown(0) TCGA-A6-6649-01 15 91795180 91795180 G A SV2B Missense_Mutation p.V195M 0.43 tolerated(0.24) probably_damaging(0.967) TCGA-A6-6649-01 16 1260937 1260937 G A CACNA1H Missense_Mutation p.V1397M 0.43 deleterious(0) probably_damaging(0.999) TCGA-A6-6649-01 16 14989860 14989860 G A NOMO1 3'UTR 0.13 TCGA-A6-6649-01 16 20871510 20871510 C T DCUN1D3 Missense_Mutation p.A205T 0.15 deleterious(0) probably_damaging(0.999) TCGA-A6-6649-01 16 24762102 24762102 G A TNRC6A Missense_Mutation p.D37N 0.07 deleterious_low_confidence(0.02) benign(0.021) TCGA-A6-6649-01 16 2578298 2578298 G A AMDHD2 Missense_Mutation p.R260H 0.26 deleterious(0.05) benign(0.119) TCGA-A6-6649-01 16 2812333 2812333 C T SRRM2 Missense_Mutation p.R602C 0.13 unknown(0) TCGA-A6-6649-01 16 57931806 57931806 G A CNGB1 Missense_Mutation p.R997C 0.16 deleterious(0) probably_damaging(0.985) TCGA-A6-6649-01 16 58712716 58712716 A G SLC38A7 Missense_Mutation p.V118A 0.10 deleterious(0.01) benign(0.143) TCGA-A6-6649-01 16 70504902 70504902 C T FUK Missense_Mutation p.S366F 0.30 tolerated(0.06) benign(0.436) TCGA-A6-6649-01 16 80584482 80584482 C T DYNLRB2 3'UTR 0.18 TCGA-A6-6649-01 16 81150991 81150991 C T PKD1L2 RNA 0.26 TCGA-A6-6649-01 16 88503080 88503080 G A ZNF469 Missense_Mutation p.V3040M 0.16 benign(0.004) TCGA-A6-6649-01 17 16843679 16843679 G A TNFRSF13B Missense_Mutation p.R198C 0.35 tolerated(0.12) benign(0.007) TCGA-A6-6649-01 17 17045938 17045938 C T MPRIP Intron 0.43 TCGA-A6-6649-01 17 2599530 2599530 G A CLUH Nonsense_Mutation p.Q733* 0.45 TCGA-A6-6649-01 17 56435861 56435861 G A RNF43 Nonsense_Mutation p.Q426* 0.48 TCGA-A6-6649-01 17 71354291 71354291 G A SDK2 Silent p.I1840I 0.09 TCGA-A6-6649-01 17 7320373 7320373 G A NLGN2 Missense_Mutation p.R588H 0.11 deleterious(0) probably_damaging(0.988) TCGA-A6-6649-01 17 73812972 73812972 G A UNK Silent p.P361P 0.46 TCGA-A6-6649-01 17 7577117 7577117 A T TP53 Missense_Mutation p.V274D 0.37 deleterious(0) probably_damaging(0.994) TCGA-A6-6649-01 18 29264323 29264325 AGA - B4GALT6 In_Frame_Del p.F22del 0.21 TCGA-A6-6649-01 18 46812914 46812914 G A DYM Missense_Mutation p.P279L 0.32 tolerated(0.1) benign(0.033) TCGA-A6-6649-01 18 5891940 5891940 C T TMEM200C Silent p.V41V 0.08 TCGA-A6-6649-01 18 61585231 61585232 CT - SERPINB10 Frame_Shift_Del p.S90* 0.23 TCGA-A6-6649-01 18 7888265 7888265 G T PTPRM Missense_Mutation p.V120F 0.08 deleterious(0) probably_damaging(0.975) TCGA-A6-6649-01 19 11618519 11618519 T C ECSIT Missense_Mutation p.R315G 0.37 deleterious(0.03) benign(0.179) TCGA-A6-6649-01 19 1255030 1255030 G A MIDN Missense_Mutation p.A276T 0.08 deleterious(0.02) possibly_damaging(0.499) TCGA-A6-6649-01 19 19329750 19329750 G A NCAN Missense_Mutation p.E34K 0.34 tolerated(0.11) benign(0.003) TCGA-A6-6649-01 19 19381122 19381122 G A TM6SF2 Intron 0.33 TCGA-A6-6649-01 19 30936439 30936439 G A ZNF536 Missense_Mutation p.R657H 0.33 deleterious(0) possibly_damaging(0.804) TCGA-A6-6649-01 19 35862752 35862752 G A GPR42 Missense_Mutation p.G164D 0.05 tolerated(0.26) benign(0.011) TCGA-A6-6649-01 19 5867385 5867385 C T FUT5 Missense_Mutation p.A118T 0.14 deleterious(0.01) benign(0.418) TCGA-A6-6649-01 19 7796646 7796646 G A CLEC4G Missense_Mutation p.R23C 0.34 tolerated(0.18) benign(0.021) TCGA-A6-6649-01 1 114483122 114483122 C T HIPK1 Silent p.N39N 0.17 TCGA-A6-6649-01 1 12779577 12779577 C T AADACL3 Missense_Mutation p.T33M 0.37 deleterious(0) possibly_damaging(0.643) TCGA-A6-6649-01 1 145562557 145562557 C T ANKRD35 Missense_Mutation p.R749W 0.12 deleterious(0) probably_damaging(0.929) TCGA-A6-6649-01 1 152282432 152282432 C G FLG Missense_Mutation p.G1644R 0.09 probably_damaging(0.953) TCGA-A6-6649-01 1 156843450 156843450 G A NTRK1 Silent p.T292T 0.46 TCGA-A6-6649-01 1 162722951 162722951 G A DDR2 Missense_Mutation p.S50N 0.09 deleterious(0) probably_damaging(0.982) TCGA-A6-6649-01 1 17029446 17029446 G A ESPNP RNA 0.06 TCGA-A6-6649-01 1 181686272 181686272 C T CACNA1E Silent p.D453D 0.10 TCGA-A6-6649-01 1 19651142 19651142 C T PQLC2 Silent p.A60A 0.30 TCGA-A6-6649-01 1 22987549 22987549 C T C1QB Silent p.H144H 0.16 TCGA-A6-6649-01 1 23420566 23420566 C T LUZP1 Silent p.A63A 0.30 TCGA-A6-6649-01 1 241932789 241932789 G A WDR64 Missense_Mutation p.R712H 0.25 tolerated(0.11) probably_damaging(0.999) TCGA-A6-6649-01 1 248058990 248058990 G A OR2W3 Silent p.A34A 0.09 TCGA-A6-6649-01 1 41101687 41101687 G A RIMS3 Missense_Mutation p.T87M 0.28 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-A6-6649-01 1 68904697 68904697 A C RPE65 Missense_Mutation p.F309C 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-A6-6649-01 1 70503848 70503848 C T LRRC7 Missense_Mutation p.R743W 0.28 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-A6-6649-01 1 78959045 78959045 C A PTGFR Missense_Mutation p.S206Y 0.05 deleterious(0) probably_damaging(0.988) TCGA-A6-6649-01 1 97544587 97544587 G T DPYD Missense_Mutation p.T1008K 0.10 tolerated(0.87) benign(0) TCGA-A6-6649-01 20 2517922 2517922 C T TMC2 Silent p.G14G 0.30 TCGA-A6-6649-01 20 30053372 30053372 C T DEFB124 Silent p.A51A 0.30 TCGA-A6-6649-01 21 27945234 27945234 C T CYYR1 Missense_Mutation p.R9H 0.29 tolerated_low_confidence(0.17) possibly_damaging(0.812) TCGA-A6-6649-01 21 34860889 34860889 C A DNAJC28 Missense_Mutation p.R271I 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6649-01 21 37665617 37665617 G T DOPEY2 Splice_Site p.X2216_splice 0.11 TCGA-A6-6649-01 21 41496207 41496207 A G DSCAM Missense_Mutation p.M1204T 0.09 tolerated(0.38) benign(0.002) TCGA-A6-6649-01 22 20052091 20052091 C T TANGO2 Missense_Mutation p.A246V 0.09 tolerated(0.16) benign(0.02) TCGA-A6-6649-01 22 29654924 29654924 G A EMID1 Silent p.E441E 0.58 TCGA-A6-6649-01 2 141819775 141819775 G A LRP1B Nonsense_Mutation p.R361* 0.32 TCGA-A6-6649-01 2 152727085 152727085 C T CACNB4 Missense_Mutation p.R220H 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6649-01 2 165947080 165947080 C A SCN3A Missense_Mutation p.L1861F 0.05 deleterious(0) probably_damaging(0.998) TCGA-A6-6649-01 2 179255896 179255896 G T OSBPL6 Nonsense_Mutation p.G825* 0.06 TCGA-A6-6649-01 2 179490118 179490118 G T TTN Silent p.V14810V 0.26 TCGA-A6-6649-01 2 179552874 179552874 C T TTN Missense_Mutation p.E10759K 0.07 TCGA-A6-6649-01 2 179648923 179648923 G A TTN Silent p.F883F 0.25 TCGA-A6-6649-01 2 17998018 17998018 G A MSGN1 Missense_Mutation p.G78D 0.09 deleterious(0.03) benign(0.186) TCGA-A6-6649-01 2 188361753 188361753 C T TFPI Silent p.A58A 0.29 TCGA-A6-6649-01 2 227915806 227915806 G A COL4A4 Missense_Mutation p.H1013Y 0.24 unknown(0) TCGA-A6-6649-01 2 238261167 238261167 G A COL6A3 Missense_Mutation p.R2251W 0.35 unknown(0) TCGA-A6-6649-01 2 49190914 49190914 T C FSHR Missense_Mutation p.K349R 0.11 deleterious(0.04) benign(0.038) TCGA-A6-6649-01 2 96594873 96594873 T A ANKRD36C 3'UTR 0.35 TCGA-A6-6649-01 3 10370709 10370709 C T ATP2B2 Missense_Mutation p.R1174Q 0.40 tolerated_low_confidence(0.61) benign(0.342) TCGA-A6-6649-01 3 112738488 112738488 C T C3orf17 Missense_Mutation p.A3T 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-A6-6649-01 3 11389458 11389458 G A ATG7 Silent p.K411K 0.10 TCGA-A6-6649-01 3 130140020 130140020 C T COL6A5 Silent p.Y1658Y 0.29 TCGA-A6-6649-01 3 151165416 151165416 G C IGSF10 Missense_Mutation p.Q785E 0.09 tolerated(0.33) benign(0.294) TCGA-A6-6649-01 3 184742140 184742140 C T VPS8 Missense_Mutation p.S1340L 0.17 tolerated(0.3) benign(0.001) TCGA-A6-6649-01 3 63968014 63968014 C T ATXN7 Missense_Mutation p.S302L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6649-01 3 97661240 97661240 G A CRYBG3 Missense_Mutation p.G978E 0.29 deleterious(0) probably_damaging(0.992) TCGA-A6-6649-01 4 148800393 148800393 G A ARHGAP10 Silent p.P281P 0.14 TCGA-A6-6649-01 4 156830041 156830041 C G TDO2 Silent p.V102V 0.36 TCGA-A6-6649-01 4 159091430 159091430 A C FAM198B Missense_Mutation p.V327G 0.15 tolerated(0.33) unknown(0) TCGA-A6-6649-01 4 188924681 188924681 T C ZFP42 Silent p.T240T 0.19 TCGA-A6-6649-01 4 20258328 20258328 G A SLIT2 Silent p.T71T 0.32 TCGA-A6-6649-01 4 7731377 7731377 G A SORCS2 Missense_Mutation p.D1016N 0.46 deleterious(0.05) benign(0.059) TCGA-A6-6649-01 5 127727725 127727725 T A FBN2 Missense_Mutation p.N530I 0.13 tolerated(0.06) benign(0.284) TCGA-A6-6649-01 5 140167759 140167759 G A PCDHA1 Silent p.T628T 0.44 TCGA-A6-6649-01 5 15937019 15937019 C G FBXL7 Missense_Mutation p.N400K 0.10 tolerated(0.14) benign(0.018) TCGA-A6-6649-01 5 160763644 160763645 - A GABRB2 Frame_Shift_Ins p.S225Ffs*13 0.33 TCGA-A6-6649-01 5 175913451 175913451 C T FAF2 Silent p.H76H 0.17 TCGA-A6-6649-01 5 178415973 178415973 C T GRM6 Silent p.R439R 0.10 TCGA-A6-6649-01 5 195179 195179 G A LRRC14B Missense_Mutation p.R419H 0.40 deleterious(0) benign(0.232) TCGA-A6-6649-01 5 61876427 61876427 C T LRRC70 Missense_Mutation p.P388S 0.41 deleterious(0.03) benign(0.102) TCGA-A6-6649-01 5 7626397 7626397 C T ADCY2 Missense_Mutation p.R230W 0.43 deleterious(0) probably_damaging(0.998) TCGA-A6-6649-01 6 152470650 152470650 G A SYNE1 Missense_Mutation p.R8202C 0.11 probably_damaging(0.998) TCGA-A6-6649-01 6 154360600 154360600 C T OPRM1 Missense_Mutation p.A67V 0.17 deleterious_low_confidence(0.01) benign(0.024) TCGA-A6-6649-01 6 158502322 158502322 C T SYNJ2 Nonsense_Mutation p.Q917* 0.15 TCGA-A6-6649-01 6 160952882 160952882 T A LPA Missense_Mutation p.K2001I 0.09 deleterious(0.03) benign(0.021) TCGA-A6-6649-01 6 28478558 28478558 C T GPX6 Missense_Mutation p.A71T 0.41 tolerated(1) benign(0) TCGA-A6-6649-01 6 31736849 31736849 T C VWA7 Silent p.K483K 0.12 TCGA-A6-6649-01 6 50810993 50810993 C T TFAP2B Missense_Mutation p.A424V 0.12 deleterious(0.04) benign(0.34) TCGA-A6-6649-01 6 96655201 96655201 G A FUT9 3'UTR 0.26 TCGA-A6-6649-01 6 99848441 99848441 T A PNISR Missense_Mutation p.H798L 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-A6-6649-01 7 100684293 100684293 C G MUC17 Missense_Mutation p.T3199S 0.15 benign(0.038) TCGA-A6-6649-01 7 100686942 100686942 C T MUC17 Missense_Mutation p.T4082M 0.32 unknown(0) TCGA-A6-6649-01 7 120740134 120740134 C T CPED1 Missense_Mutation p.R302C 0.39 tolerated(0.2) possibly_damaging(0.814) TCGA-A6-6649-01 7 136700563 136700563 T C CHRM2 Silent p.D317D 0.40 TCGA-A6-6649-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-A6-6649-01 7 149476685 149476685 G A SSPO RNA 0.21 TCGA-A6-6649-01 7 154863059 154863059 G A HTR5A Silent p.T150T 0.32 TCGA-A6-6649-01 7 2577998 2578000 AGA - BRAT1 In_Frame_Del p.L724del 0.58 TCGA-A6-6649-01 7 4153886 4153886 G A SDK1 Missense_Mutation p.R1268Q 0.25 tolerated(0.45) benign(0.014) TCGA-A6-6649-01 7 45104197 45104197 G A CCM2 Missense_Mutation p.V163I 0.24 tolerated(0.08) benign(0.3) TCGA-A6-6649-01 7 45123984 45123984 C T NACAD Missense_Mutation p.D599N 0.21 tolerated(0.2) benign(0) TCGA-A6-6649-01 7 50686894 50686894 T G GRB10 Silent p.A250A 0.10 TCGA-A6-6649-01 7 56128554 56128554 T A CCT6A Missense_Mutation p.I423N 0.31 tolerated(0.36) benign(0.005) TCGA-A6-6649-01 7 87825910 87825910 C T ADAM22 3'Flank 0.27 TCGA-A6-6649-01 8 107773141 107773141 G A ABRA 3'UTR 0.30 TCGA-A6-6649-01 8 143832568 143832568 C T LYPD2 Missense_Mutation p.V27I 0.27 deleterious(0) benign(0.022) TCGA-A6-6649-01 8 144789984 144789984 C T CCDC166 Missense_Mutation p.R99H 0.47 tolerated(0.2) probably_damaging(0.999) TCGA-A6-6649-01 8 146033007 146033007 G A ZNF517 Missense_Mutation p.G236S 0.27 tolerated(0.78) benign(0.003) TCGA-A6-6649-01 8 23297428 23297428 C T ENTPD4 Missense_Mutation p.E295K 0.23 deleterious(0.01) possibly_damaging(0.818) TCGA-A6-6649-01 8 42036521 42036521 C T PLAT Missense_Mutation p.R475H 0.39 deleterious(0.04) benign(0.022) TCGA-A6-6649-01 8 64098897 64098897 G C YTHDF3 Missense_Mutation p.G109R 0.28 deleterious(0) probably_damaging(0.964) TCGA-A6-6649-01 8 77616790 77616790 C A ZFHX4 Missense_Mutation p.A156E 0.29 possibly_damaging(0.765) TCGA-A6-6649-01 8 86393140 86393140 C G CA2 3'UTR 0.38 TCGA-A6-6649-01 8 93074793 93074793 C T RUNX1T1 Intron 0.23 TCGA-A6-6649-01 9 104071663 104071663 C A LPPR1 Missense_Mutation p.L186M 0.15 deleterious(0.02) benign(0.139) TCGA-A6-6649-01 9 130678732 130678732 T A ST6GALNAC4 5'UTR 0.10 TCGA-A6-6649-01 9 136082707 136082707 G A OBP2B Silent p.L98L 0.36 TCGA-A6-6649-01 9 22451231 22451231 C A DMRTA1 Missense_Mutation p.S279Y 0.50 deleterious(0) possibly_damaging(0.819) TCGA-A6-6649-01 9 33442938 33442938 A C AQP3 Missense_Mutation p.L135R 0.12 deleterious(0) probably_damaging(0.922) TCGA-A6-6649-01 9 376991 376991 G A DOCK8 Silent p.E740E 0.18 TCGA-A6-6649-01 9 3932428 3932428 T C GLIS3 Missense_Mutation p.T639A 0.16 deleterious(0) probably_damaging(0.955) TCGA-A6-6649-01 X 102632302 102632302 A G NGFRAP1 Intron 0.21 TCGA-A6-6649-01 X 150906962 150906962 G A CNGA2 Missense_Mutation p.E3K 0.60 tolerated_low_confidence(0.22) benign(0.105) TCGA-A6-6649-01 X 154327588 154327588 A G BRCC3 Splice_Site p.X183_splice 0.12 TCGA-A6-6649-01 X 56310911 56310911 G A KLF8 Missense_Mutation p.R355H 0.24 deleterious(0.03) unknown(0) TCGA-A6-6649-01 X 90692898 90692898 G A PABPC5 3'UTR 0.08 TCGA-A6-6651-01 10 102242168 102242168 G C WNT8B Missense_Mutation p.K217N 0.20 deleterious(0.01) probably_damaging(0.944) TCGA-A6-6651-01 10 48389550 48389550 C T RBP3 Missense_Mutation p.R443H 0.49 deleterious(0) probably_damaging(0.982) TCGA-A6-6651-01 10 94274735 94274735 C T IDE Silent p.L242L 0.15 TCGA-A6-6651-01 11 2356931 2356931 G A CD81-AS1 Intron 0.25 TCGA-A6-6651-01 11 30601875 30601875 C T MPPED2 Missense_Mutation p.D16N 0.12 tolerated(0.44) benign(0.405) TCGA-A6-6651-01 11 45671763 45671763 G A CHST1 Silent p.R237R 0.23 TCGA-A6-6651-01 11 66099842 66099842 C G RIN1 Missense_Mutation p.E753Q 0.13 tolerated_low_confidence(0.09) benign(0.116) TCGA-A6-6651-01 11 89450627 89450627 G A TRIM77 Missense_Mutation p.D314N 0.14 tolerated(0.11) benign(0.093) TCGA-A6-6651-01 12 10999948 10999948 T G PRR4 Missense_Mutation p.Q40P 0.13 deleterious_low_confidence(0.01) benign(0.293) TCGA-A6-6651-01 12 118520232 118520232 C T VSIG10 Missense_Mutation p.G122S 0.16 tolerated(0.07) possibly_damaging(0.791) TCGA-A6-6651-01 12 132426074 132426074 G A PUS1 Missense_Mutation p.R261H 0.33 deleterious(0) probably_damaging(1) TCGA-A6-6651-01 12 39719642 39719642 T A KIF21A Missense_Mutation p.K1152M 0.09 deleterious(0) probably_damaging(0.995) TCGA-A6-6651-01 12 43770353 43770353 G A ADAMTS20 Missense_Mutation p.A1700V 0.11 tolerated(0.13) possibly_damaging(0.637) TCGA-A6-6651-01 12 50283294 50283294 G C FAIM2 Silent p.L207L 0.31 TCGA-A6-6651-01 12 64588035 64588035 C T C12orf66 Missense_Mutation p.D309N 0.06 deleterious(0) probably_damaging(0.961) TCGA-A6-6651-01 12 7972105 7972105 C A SLC2A14 Silent p.T371T 0.11 TCGA-A6-6651-01 12 80865887 80865887 G A PTPRQ Missense_Mutation p.R344H 0.12 tolerated(0.57) benign(0.001) TCGA-A6-6651-01 13 25825847 25825847 T C MTMR6 Missense_Mutation p.I515M 0.20 tolerated(0.19) benign(0.008) TCGA-A6-6651-01 13 29599206 29599206 C A MTUS2 Missense_Mutation p.T134K 0.07 tolerated(0.07) benign(0) TCGA-A6-6651-01 13 51854817 51854817 T C FAM124A Missense_Mutation p.S392P 0.09 tolerated(0.08) benign(0.056) TCGA-A6-6651-01 13 88328086 88328086 C A SLITRK5 Missense_Mutation p.T148N 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-A6-6651-01 14 70442470 70442470 C T SMOC1 Silent p.V139V 0.23 TCGA-A6-6651-01 14 86089457 86089457 G A FLRT2 Silent p.T533T 0.33 TCGA-A6-6651-01 15 38643496 38643496 G A SPRED1 Silent p.K322K 0.33 TCGA-A6-6651-01 15 57545466 57545466 C T TCF12 Nonsense_Mutation p.R423* 0.15 TCGA-A6-6651-01 16 19883974 19883974 G T GPRC5B Missense_Mutation p.A65E 0.17 deleterious(0.01) probably_damaging(1) TCGA-A6-6651-01 17 26091086 26091086 G T NOS2 Missense_Mutation p.P838Q 0.06 deleterious(0) probably_damaging(0.992) TCGA-A6-6651-01 17 36861876 36861876 T C MLLT6 5'UTR 0.14 TCGA-A6-6651-01 17 38978508 38978508 G T KRT10 Silent p.G110G 0.10 TCGA-A6-6651-01 17 39580409 39580409 G A KRT37 Missense_Mutation p.R123C 0.14 deleterious(0) probably_damaging(0.977) TCGA-A6-6651-01 17 42883163 42883163 C T GJC1 Missense_Mutation p.R8H 0.20 deleterious(0) probably_damaging(0.995) TCGA-A6-6651-01 17 73102073 73102073 C T SLC16A5 Missense_Mutation p.P488L 0.14 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-A6-6651-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.41 deleterious(0) probably_damaging(1) TCGA-A6-6651-01 18 19080546 19080546 C T GREB1L Missense_Mutation p.R1339C 0.19 deleterious(0) probably_damaging(1) TCGA-A6-6651-01 18 22672002 22672002 A G ZNF521 Silent p.F1234F 0.11 TCGA-A6-6651-01 18 74153451 74153451 G A ZNF516 Silent p.C520C 0.48 TCGA-A6-6651-01 18 77221353 77221353 A T NFATC1 Missense_Mutation p.D636V 0.26 deleterious(0) benign(0.241) TCGA-A6-6651-01 19 12575460 12575460 C T ZNF709 Missense_Mutation p.G426S 0.10 tolerated(0.13) probably_damaging(0.999) TCGA-A6-6651-01 19 19371710 19371710 G A HAPLN4 Silent p.N132N 0.11 TCGA-A6-6651-01 19 20229567 20229567 T C ZNF90 Missense_Mutation p.C402R 0.19 deleterious(0) possibly_damaging(0.765) TCGA-A6-6651-01 19 33696485 33696485 T C LRP3 Missense_Mutation p.L270P 0.08 tolerated(0.07) probably_damaging(0.985) TCGA-A6-6651-01 19 38376478 38376478 G A WDR87 Silent p.A2572A 0.08 TCGA-A6-6651-01 19 41239202 41239202 G A ITPKC Missense_Mutation p.R536H 0.09 deleterious(0.02) probably_damaging(0.986) TCGA-A6-6651-01 19 49990817 49990817 T A RPL13A 5'UTR 0.22 TCGA-A6-6651-01 19 55378174 55378174 G - KIR3DL2 Frame_Shift_Del p.V454Ffs*24 0.11 TCGA-A6-6651-01 19 55450489 55450489 G A NLRP7 Silent p.T566T 0.29 TCGA-A6-6651-01 19 55451153 55451153 C T NLRP7 Missense_Mutation p.R345H 0.14 deleterious(0.02) benign(0.046) TCGA-A6-6651-01 19 5778542 5778542 G A CATSPERD Missense_Mutation p.R751H 0.28 tolerated(0.2) possibly_damaging(0.694) TCGA-A6-6651-01 1 11298020 11298020 C A MTOR Missense_Mutation p.L696F 0.17 deleterious(0) probably_damaging(0.922) TCGA-A6-6651-01 1 186415682 186415682 C G PDC Missense_Mutation p.R30T 0.18 deleterious(0) probably_damaging(0.998) TCGA-A6-6651-01 1 19481546 19481546 G C UBR4 Silent p.G2108G 0.12 TCGA-A6-6651-01 1 204587210 204587210 G A LRRN2 Silent p.L637L 0.14 TCGA-A6-6651-01 1 20975588 20975588 A C PINK1 Missense_Mutation p.N451T 0.20 deleterious(0) probably_damaging(0.994) TCGA-A6-6651-01 1 219347297 219347297 C A LYPLAL1 Missense_Mutation p.A22D 0.18 deleterious(0.01) possibly_damaging(0.543) TCGA-A6-6651-01 1 23235576 23235576 C T EPHB2 Missense_Mutation p.S806L 0.12 deleterious(0) probably_damaging(0.994) TCGA-A6-6651-01 1 34038176 34038176 G A CSMD2 Silent p.G2566G 0.10 TCGA-A6-6651-01 1 74507540 74507540 A G LRRIQ3 Missense_Mutation p.Y359H 0.19 tolerated(0.99) benign(0.001) TCGA-A6-6651-01 1 78414892 78414892 T C FUBP1 Missense_Mutation p.Y625C 0.14 deleterious(0) unknown(0) TCGA-A6-6651-01 20 25203487 25203487 C T ENTPD6 Silent p.H353H 0.20 TCGA-A6-6651-01 20 30527048 30527048 T C TTLL9 Missense_Mutation p.F408L 0.12 tolerated(0.33) benign(0.002) TCGA-A6-6651-01 20 60718882 60718882 C T SS18L1 Silent p.S2S 0.12 TCGA-A6-6651-01 20 62594021 62594021 C T ZNF512B Silent p.L694L 0.52 TCGA-A6-6651-01 22 17119588 17119588 T G TPTEP1 RNA 0.22 TCGA-A6-6651-01 22 42610471 42610471 C A TCF20 Missense_Mutation p.A281S 0.21 benign(0.005) TCGA-A6-6651-01 2 12863650 12863650 C T TRIB2 Missense_Mutation p.R179W 0.13 deleterious(0) probably_damaging(1) TCGA-A6-6651-01 2 141055406 141055406 G A LRP1B Missense_Mutation p.P4313L 0.42 benign(0.006) TCGA-A6-6651-01 2 164466688 164466688 C T FIGN Missense_Mutation p.G552S 0.50 tolerated(0.17) benign(0.056) TCGA-A6-6651-01 2 175431880 175431880 C T WIPF1 Silent p.P458P 0.07 TCGA-A6-6651-01 2 179308062 179308062 T C PRKRA Missense_Mutation p.Q149R 0.55 tolerated(0.11) benign(0.117) TCGA-A6-6651-01 2 18113142 18113142 C G KCNS3 Silent p.V289V 0.14 TCGA-A6-6651-01 2 196786827 196786827 G A DNAH7 Missense_Mutation p.T1307M 0.15 deleterious(0) probably_damaging(0.992) TCGA-A6-6651-01 2 206628480 206628480 G A NRP2 Silent p.L709L 0.41 TCGA-A6-6651-01 2 220083282 220083282 A C ABCB6 Silent p.A38A 0.40 TCGA-A6-6651-01 2 234085941 234085941 C T INPP5D Nonsense_Mutation p.R662* 0.09 TCGA-A6-6651-01 2 234357939 234357939 T A DGKD Missense_Mutation p.I602K 0.48 deleterious(0.02) benign(0.194) TCGA-A6-6651-01 2 242756254 242756254 C T NEU4 Missense_Mutation p.R136C 0.41 deleterious(0) probably_damaging(0.991) TCGA-A6-6651-01 3 12545080 12545080 G T TSEN2 Missense_Mutation p.V210L 0.41 tolerated(0.55) benign(0.006) TCGA-A6-6651-01 3 167189551 167189551 T G SERPINI2 Missense_Mutation p.Q24H 0.35 tolerated(0.07) benign(0.025) TCGA-A6-6651-01 3 170021084 170021084 A - PRKCI 3'UTR 0.33 TCGA-A6-6651-01 3 184069847 184069847 A G CLCN2 Missense_Mutation p.I790T 0.26 deleterious(0) possibly_damaging(0.721) TCGA-A6-6651-01 3 186508044 186508044 C G RFC4 Missense_Mutation p.D295H 0.19 deleterious(0.01) possibly_damaging(0.528) TCGA-A6-6651-01 3 196613000 196613000 G A SENP5 Silent p.V316V 0.12 TCGA-A6-6651-01 3 51747075 51747075 G A GRM2 Missense_Mutation p.R346H 0.42 tolerated(0.09) probably_damaging(0.932) TCGA-A6-6651-01 3 52392613 52392613 T C DNAH1 Missense_Mutation p.S1376P 0.09 probably_damaging(1) TCGA-A6-6651-01 3 78708917 78708917 A T ROBO1 Missense_Mutation p.N787K 0.24 tolerated(0.2) benign(0.089) TCGA-A6-6651-01 3 93733998 93733998 A C STX19 Missense_Mutation p.V39G 0.31 deleterious(0.02) probably_damaging(0.915) TCGA-A6-6651-01 3 96533619 96533619 C T EPHA6 Missense_Mutation p.A51V 0.11 tolerated_low_confidence(0.35) possibly_damaging(0.695) TCGA-A6-6651-01 4 108566030 108566030 T C PAPSS1 Silent p.E478E 0.08 TCGA-A6-6651-01 4 114280040 114280040 G T ANK2 Missense_Mutation p.E3422D 0.19 benign(0.185) TCGA-A6-6651-01 4 123813609 123813609 T C FGF2 3'UTR 0.25 TCGA-A6-6651-01 4 156858570 156858570 G A CTSO Silent p.Y206Y 0.29 TCGA-A6-6651-01 4 186284663 186284663 G C SNX25 3'UTR 0.16 TCGA-A6-6651-01 4 57796440 57796440 T A REST Missense_Mutation p.D472E 0.32 tolerated(0.21) benign(0.134) TCGA-A6-6651-01 4 62599179 62599179 G C LPHN3 Missense_Mutation p.D368H 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6651-01 4 72316209 72316209 A G SLC4A4 Missense_Mutation p.D386G 0.13 deleterious(0) probably_damaging(0.99) TCGA-A6-6651-01 4 90035654 90035654 G A TIGD2 Missense_Mutation p.R510Q 0.42 tolerated(0.22) unknown(0) TCGA-A6-6651-01 5 113831809 113831809 G A KCNN2 Missense_Mutation p.R557Q 0.50 tolerated_low_confidence(0.34) unknown(0) TCGA-A6-6651-01 5 140250833 140250833 G T PCDHA11 Silent p.L715L 0.16 TCGA-A6-6651-01 5 140558171 140558171 C T PCDHB8 Missense_Mutation p.R186C 0.03 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-A6-6651-01 5 176004648 176004648 C T CDHR2 Missense_Mutation p.T454I 0.32 tolerated(0.05) benign(0.005) TCGA-A6-6651-01 5 90050838 90050838 A - GPR98 Frame_Shift_Del p.G3807Dfs*10 0.12 TCGA-A6-6651-01 6 110300609 110300609 G A GPR6 Silent p.A98A 0.11 TCGA-A6-6651-01 6 132860326 132860326 G T TAAR9 Missense_Mutation p.V300F 0.21 deleterious(0) possibly_damaging(0.888) TCGA-A6-6651-01 6 30157302 30157302 C T TRIM26 Missense_Mutation p.R266Q 0.13 tolerated(0.09) possibly_damaging(0.701) TCGA-A6-6651-01 6 56458586 56458587 CT - DST Frame_Shift_Del p.R1577Sfs*17 0.23 TCGA-A6-6651-01 6 64430692 64430692 G T EYS Missense_Mutation p.L3079I 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-A6-6651-01 6 75834852 75834852 C G COL12A1 Missense_Mutation p.G2200R 0.17 probably_damaging(1) TCGA-A6-6651-01 6 99283736 99283736 C T POU3F2 Silent p.N329N 0.10 TCGA-A6-6651-01 7 102865568 102865568 G T DPY19L2P2 RNA 0.08 TCGA-A6-6651-01 7 113519468 113519469 - T PPP1R3A Frame_Shift_Ins p.R560Kfs*46 0.14 TCGA-A6-6651-01 7 128845493 128845493 G T SMO Missense_Mutation p.A264S 0.13 tolerated(0.08) possibly_damaging(0.562) TCGA-A6-6651-01 7 143792621 143792621 A G OR2A12 Missense_Mutation p.T141A 0.15 tolerated(0.11) benign(0.005) TCGA-A6-6651-01 7 154876043 154876043 T A HTR5A Missense_Mutation p.I307N 0.10 deleterious(0) possibly_damaging(0.629) TCGA-A6-6651-01 7 76943695 76943695 A G GSAP Missense_Mutation p.L734P 0.11 deleterious(0) probably_damaging(0.982) TCGA-A6-6651-01 8 100182273 100182273 G A VPS13B Missense_Mutation p.G739S 0.07 deleterious(0.01) probably_damaging(0.986) TCGA-A6-6651-01 8 103665715 103665715 A C KLF10 Intron 0.10 TCGA-A6-6651-01 8 27661021 27661021 C A ESCO2 3'UTR 0.24 TCGA-A6-6651-01 8 32599590 32599590 G A NRG1 Intron 0.11 TCGA-A6-6651-01 8 40554856 40554856 G A ZMAT4 Missense_Mutation p.S86L 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-6651-01 9 101536200 101536200 C A ANKS6 Missense_Mutation p.A594S 0.33 tolerated(0.48) benign(0.003) TCGA-A6-6651-01 9 102731002 102731002 C T STX17 3'UTR 0.14 TCGA-A6-6651-01 9 16552744 16552744 C T BNC2 Silent p.T151T 0.08 TCGA-A6-6651-01 9 84610013 84610013 C G SPATA31D1 Missense_Mutation p.P1543R 0.17 deleterious(0.04) possibly_damaging(0.563) TCGA-A6-6651-01 X 147743446 147743446 A G AFF2 Silent p.A66A 0.13 TCGA-A6-6651-01 X 73812056 73812056 C T RLIM Missense_Mutation p.R365H 0.08 tolerated(0.64) unknown(0) TCGA-A6-6651-01 X 84526562 84526562 A G ZNF711 Missense_Mutation p.K672E 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6652-01 10 108412274 108412274 C T SORCS1 Missense_Mutation p.V781I 0.51 deleterious(0.03) benign(0.422) TCGA-A6-6652-01 10 12139685 12139685 C G DHTKD1 Missense_Mutation p.A454G 0.24 tolerated(0.09) benign(0.008) TCGA-A6-6652-01 10 13735844 13735844 C T FRMD4A Intron 0.33 TCGA-A6-6652-01 11 122775091 122775091 C T C11orf63 Missense_Mutation p.P268L 0.35 deleterious(0) probably_damaging(0.983) TCGA-A6-6652-01 11 47197405 47197405 A G ARFGAP2 Silent p.N87N 0.38 TCGA-A6-6652-01 11 552231 552231 C T LRRC56 Missense_Mutation p.R394C 0.36 tolerated(0.15) benign(0.007) TCGA-A6-6652-01 11 5566241 5566241 C A OR52H1 Silent p.L171L 0.20 TCGA-A6-6652-01 11 57314066 57314066 C T SMTNL1 Silent p.Y445Y 0.43 TCGA-A6-6652-01 11 6048397 6048397 C T OR56A1 Missense_Mutation p.V180I 0.42 tolerated(0.46) benign(0.017) TCGA-A6-6652-01 11 6129212 6129212 G T OR56B4 Missense_Mutation p.L68F 0.45 tolerated(1) benign(0.004) TCGA-A6-6652-01 11 613429 613429 C T IRF7 Silent p.P351P 0.48 TCGA-A6-6652-01 11 62063783 62063783 G A SCGB1D4 3'UTR 0.56 TCGA-A6-6652-01 11 67287603 67287603 G A CABP2 Silent p.F136F 0.28 TCGA-A6-6652-01 12 27064218 27064218 T G ASUN Missense_Mutation p.E613A 0.35 tolerated(0.11) benign(0.151) TCGA-A6-6652-01 12 78598751 78598751 A G NAV3 Missense_Mutation p.K2269E 0.35 tolerated(0.7) possibly_damaging(0.615) TCGA-A6-6652-01 12 85438586 85438586 A G LRRIQ1 Missense_Mutation p.K112R 0.41 tolerated(0.11) probably_damaging(0.998) TCGA-A6-6652-01 13 109793544 109793544 G A MYO16 Missense_Mutation p.V1640M 0.34 deleterious_low_confidence(0.05) possibly_damaging(0.724) TCGA-A6-6652-01 13 25442810 25442810 G A RNF17 Missense_Mutation p.E1412K 0.15 tolerated(0.08) probably_damaging(0.973) TCGA-A6-6652-01 13 94680095 94680095 A G GPC6 Missense_Mutation p.K275R 0.08 tolerated(0.43) benign(0.009) TCGA-A6-6652-01 14 106208262 106208262 G A IGHG1 Missense_Mutation p.A213V 0.65 deleterious(0.04) benign(0.132) TCGA-A6-6652-01 14 34268983 34268983 C T NPAS3 Silent p.S490S 0.81 TCGA-A6-6652-01 14 74398269 74398269 G C ZNF410 3'UTR 0.49 TCGA-A6-6652-01 14 95557639 95557639 C T DICER1 Missense_Mutation p.D1810N 0.73 deleterious(0) probably_damaging(1) TCGA-A6-6652-01 15 67528971 67528971 T C AAGAB Silent p.T87T 0.08 TCGA-A6-6652-01 16 17228527 17228527 C T XYLT1 Silent p.G610G 0.34 TCGA-A6-6652-01 16 56974106 56974106 C - HERPUD1 Frame_Shift_Del p.S286Pfs*2 0.39 TCGA-A6-6652-01 17 18054816 18054816 C T MYO15A Missense_Mutation p.R2588W 0.70 unknown(0) TCGA-A6-6652-01 17 2598522 2598522 G A CLUH Missense_Mutation p.T827M 0.78 deleterious(0.03) possibly_damaging(0.696) TCGA-A6-6652-01 17 30349085 30349085 C T LRRC37B Missense_Mutation p.P307L 0.10 tolerated(0.06) benign(0.121) TCGA-A6-6652-01 17 39333962 39333962 C A KRTAP4-2 3'UTR 0.28 TCGA-A6-6652-01 17 40734144 40734144 C A FAM134C Missense_Mutation p.G363V 0.71 deleterious(0) benign(0.015) TCGA-A6-6652-01 17 42982175 42982175 C T FAM187A Silent p.H326H 0.31 TCGA-A6-6652-01 17 43246485 43246485 A T HEXIM2 Missense_Mutation p.D57V 0.24 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-A6-6652-01 17 46878619 46878625 AGCAGGA TGACTCANCAGGG TTLL6 In_Frame_Ins 0.17 TCGA-A6-6652-01 17 70119870 70119870 T - SOX9 Frame_Shift_Del p.V291Afs*92 0.59 TCGA-A6-6652-01 17 72832601 72832601 G T TMEM104 Silent p.V422V 0.48 TCGA-A6-6652-01 17 7578449 7578449 C T TP53 Missense_Mutation p.A161T 0.77 deleterious(0) probably_damaging(1) TCGA-A6-6652-01 18 67996243 67996243 C T SOCS6 3'UTR 0.41 TCGA-A6-6652-01 19 17122402 17122402 C T CPAMD8 Missense_Mutation p.V192M 0.49 deleterious(0) probably_damaging(0.99) TCGA-A6-6652-01 19 2717671 2717671 C T DIRAS1 Missense_Mutation p.R45Q 0.29 deleterious(0.04) benign(0.314) TCGA-A6-6652-01 19 52272818 52272818 G A FPR2 Missense_Mutation p.V303I 0.40 deleterious(0) possibly_damaging(0.899) TCGA-A6-6652-01 19 54930427 54930427 G A TTYH1 Silent p.S84S 0.44 TCGA-A6-6652-01 19 55687086 55687086 G C SYT5 Missense_Mutation p.F177L 0.40 deleterious(0) probably_damaging(0.988) TCGA-A6-6652-01 1 100546090 100546090 T C HIAT1 Missense_Mutation p.C381R 0.51 deleterious(0) probably_damaging(0.995) TCGA-A6-6652-01 1 156452364 156452364 G A MEF2D Silent p.C41C 0.29 TCGA-A6-6652-01 1 157667455 157667455 C A FCRL3 Missense_Mutation p.V185F 0.08 deleterious(0.02) benign(0.247) TCGA-A6-6652-01 1 16559478 16559478 C A RSG1 Missense_Mutation p.K100N 0.27 deleterious(0.01) probably_damaging(0.952) TCGA-A6-6652-01 1 204948498 204948498 G A NFASC Missense_Mutation p.V663I 0.07 tolerated(0.77) benign(0.42) TCGA-A6-6652-01 1 207273300 207273300 A G C4BPB 3'UTR 0.19 TCGA-A6-6652-01 1 248058988 248058988 G A OR2W3 Missense_Mutation p.A34T 0.56 tolerated(0.08) possibly_damaging(0.612) TCGA-A6-6652-01 1 26361663 26361663 G A EXTL1 Missense_Mutation p.G619E 0.35 tolerated(0.26) benign(0.015) TCGA-A6-6652-01 1 40124935 40124935 C T NT5C1A Missense_Mutation p.R322H 0.38 deleterious(0.03) probably_damaging(0.988) TCGA-A6-6652-01 1 42905547 42905547 G A ZMYND12 Missense_Mutation p.R192C 0.37 deleterious(0.01) possibly_damaging(0.81) TCGA-A6-6652-01 1 53308632 53308632 G A ZYG11A Missense_Mutation p.C26Y 0.35 tolerated_low_confidence(1) benign(0.003) TCGA-A6-6652-01 1 70740412 70740412 C A ANKRD13C Missense_Mutation p.G462V 0.43 deleterious(0.02) benign(0.219) TCGA-A6-6652-01 1 79126471 79126471 G A IFI44 Intron 0.50 TCGA-A6-6652-01 20 21492725 21492725 C T NKX2-2 Missense_Mutation p.A220T 0.35 tolerated(0.11) possibly_damaging(0.549) TCGA-A6-6652-01 20 23350349 23350349 G A GZF1 Missense_Mutation p.D586N 0.19 deleterious(0) probably_damaging(0.986) TCGA-A6-6652-01 20 55948626 55948626 C - RAE1 Frame_Shift_Del p.P248Rfs*29 0.27 TCGA-A6-6652-01 22 21075672 21075672 G A PI4KA Missense_Mutation p.A1677V 0.45 deleterious(0) probably_damaging(0.988) TCGA-A6-6652-01 22 36690989 36690989 G A MYH9 Nonsense_Mutation p.Q1207* 0.41 TCGA-A6-6652-01 22 42905099 42905099 C G RRP7A 3'Flank 0.13 TCGA-A6-6652-01 2 120005739 120005739 G A STEAP3 Missense_Mutation p.R336H 0.26 deleterious(0) possibly_damaging(0.839) TCGA-A6-6652-01 2 160031552 160031552 G A TANC1 Missense_Mutation p.R531Q 0.24 tolerated(0.31) probably_damaging(0.998) TCGA-A6-6652-01 2 179484735 179484735 C T TTN Missense_Mutation p.R15470H 0.57 TCGA-A6-6652-01 2 18113664 18113664 C T KCNS3 Silent p.S463S 0.27 TCGA-A6-6652-01 2 198318374 198318374 C T COQ10B Silent p.P30P 0.28 TCGA-A6-6652-01 2 210752977 210752977 G T UNC80 Missense_Mutation p.E1425D 0.52 benign(0.041) TCGA-A6-6652-01 2 27249186 27249186 G A MAPRE3 Silent p.E272E 0.29 TCGA-A6-6652-01 2 27458138 27458138 T A CAD Nonsense_Mutation p.L1271* 0.07 TCGA-A6-6652-01 2 27802485 27802485 C T C2orf16 Missense_Mutation p.P1016S 0.54 tolerated(0.18) possibly_damaging(0.503) TCGA-A6-6652-01 2 33953002 33953002 G A AC009499.1 Intron 0.59 TCGA-A6-6652-01 2 50847271 50847271 T C NRXN1 Silent p.E443E 0.10 TCGA-A6-6652-01 2 91805450 91805450 T G AC116050.1 Intron 0.22 TCGA-A6-6652-01 3 122645451 122645451 G A SEMA5B Silent p.H362H 0.40 TCGA-A6-6652-01 3 127429437 127429437 G C MGLL Silent p.L194L 0.50 TCGA-A6-6652-01 3 150340920 150340920 A G SELT Silent p.Q113Q 0.39 TCGA-A6-6652-01 3 172165931 172165931 G A GHSR Silent p.L91L 0.09 TCGA-A6-6652-01 3 19554762 19554762 T G KCNH8 Missense_Mutation p.L794V 0.36 tolerated(0.22) benign(0.165) TCGA-A6-6652-01 3 39104575 39104575 A G WDR48 Missense_Mutation p.Y28C 0.46 tolerated(0.18) benign(0.012) TCGA-A6-6652-01 3 73433587 73433587 C A PDZRN3 Missense_Mutation p.Q710H 0.11 deleterious(0) possibly_damaging(0.492) TCGA-A6-6652-01 4 108817158 108817158 G A SGMS2 Missense_Mutation p.R150K 0.33 tolerated(1) benign(0.016) TCGA-A6-6652-01 4 125592729 125592729 C T ANKRD50 Missense_Mutation p.G568E 0.44 tolerated(0.15) benign(0.438) TCGA-A6-6652-01 4 3132075 3132075 G A HTT Silent p.R637R 0.15 TCGA-A6-6652-01 4 88052973 88052973 G A AFF1 Missense_Mutation p.D1044N 0.42 tolerated(0.06) unknown(0) TCGA-A6-6652-01 4 94006178 94006178 C T GRID2 Silent p.L93L 0.32 TCGA-A6-6652-01 5 112111408 112111411 ATAG - APC Frame_Shift_Del p.D170Vfs*4 0.36 TCGA-A6-6652-01 5 112175133 112175133 C G APC Nonsense_Mutation p.S1281* 0.40 TCGA-A6-6652-01 5 140207974 140207974 G C PCDHA6 Missense_Mutation p.A100P 0.08 tolerated_low_confidence(0.28) benign(0.302) TCGA-A6-6652-01 5 179663361 179663361 A T MAPK9 3'UTR 0.34 TCGA-A6-6652-01 5 26881458 26881458 T A CDH9 Missense_Mutation p.R719S 0.38 deleterious(0) benign(0.341) TCGA-A6-6652-01 5 3599400 3599400 C T IRX1 Missense_Mutation p.T113M 0.14 deleterious(0.02) possibly_damaging(0.63) TCGA-A6-6652-01 5 78181629 78181629 G T ARSB Missense_Mutation p.A307E 0.29 tolerated(0.17) benign(0.162) TCGA-A6-6652-01 6 100391006 100391006 C T MCHR2 Missense_Mutation p.V136I 0.38 deleterious(0.02) benign(0.081) TCGA-A6-6652-01 6 107391607 107391607 C A BEND3 Missense_Mutation p.G263V 0.63 tolerated(0.16) benign(0.125) TCGA-A6-6652-01 6 10877441 10877441 G A GCM2 Missense_Mutation p.T92I 0.17 tolerated(0.06) benign(0.2) TCGA-A6-6652-01 6 152615104 152615104 T C SYNE1 Silent p.L5947L 0.33 TCGA-A6-6652-01 6 161574567 161574567 G A AGPAT4 Intron 0.48 TCGA-A6-6652-01 6 29275337 29275337 C T OR14J1 Missense_Mutation p.R291W 0.45 deleterious(0) probably_damaging(0.979) TCGA-A6-6652-01 6 96651380 96651380 C G FUT9 Missense_Mutation p.L117V 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-A6-6652-01 7 131872325 131872325 C A PLXNA4 Missense_Mutation p.M966I 0.24 tolerated(0.29) benign(0.006) TCGA-A6-6652-01 7 149486438 149486438 G A SSPO RNA 0.23 TCGA-A6-6652-01 7 149497386 149497386 G A SSPO RNA 0.43 TCGA-A6-6652-01 7 47854942 47854942 G A PKD1L1 Missense_Mutation p.P2360L 0.40 tolerated(0.3) benign(0.007) TCGA-A6-6652-01 7 48353964 48353964 T A ABCA13 Missense_Mutation p.L3273M 0.32 probably_damaging(0.994) TCGA-A6-6652-01 7 72419799 72419799 C G POM121 3'UTR 0.47 TCGA-A6-6652-01 8 116599487 116599487 C T TRPS1 Missense_Mutation p.R814Q 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.489) TCGA-A6-6652-01 8 145095727 145095728 CC A SPATC1 Frame_Shift_Del p.A342Dfs*74 0.39 TCGA-A6-6652-01 9 124528784 124528784 G A DAB2IP Missense_Mutation p.R463Q 0.60 deleterious(0.01) probably_damaging(0.984) TCGA-A6-6652-01 9 32633631 32633631 C A TAF1L Missense_Mutation p.Q649H 0.42 tolerated(0.28) benign(0.02) TCGA-A6-6652-01 9 33675589 33675589 G A PTENP1 RNA 0.43 TCGA-A6-6652-01 X 123631064 123631064 G - TENM1 Frame_Shift_Del p.P1166Qfs*6 0.53 TCGA-A6-6652-01 X 50121588 50121588 A G DGKK RNA 0.87 TCGA-A6-6652-01 X 54784283 54784283 C T ITIH6 Missense_Mutation p.G742S 0.91 tolerated(1) benign(0) TCGA-A6-6652-01 X 8997446 8997446 A G FAM9B Missense_Mutation p.Y99H 0.82 tolerated(0.37) probably_damaging(0.997) TCGA-A6-6653-01 10 101715823 101715823 T - DNMBP Frame_Shift_Del p.T470Lfs*20 0.29 TCGA-A6-6653-01 10 103371383 103371383 A G FBXW4 Splice_Site p.X373_splice 0.42 TCGA-A6-6653-01 10 103986385 103986385 G T ELOVL3 Missense_Mutation p.R27M 0.11 deleterious(0.01) possibly_damaging(0.832) TCGA-A6-6653-01 10 104247970 104247970 G A ACTR1A Silent p.N84N 0.09 TCGA-A6-6653-01 10 105420859 105420859 G T SH3PXD2A Silent p.T162T 0.53 TCGA-A6-6653-01 10 108357111 108357111 G A SORCS1 Missense_Mutation p.A1088V 0.43 tolerated(0.35) benign(0.294) TCGA-A6-6653-01 10 11047397 11047397 T - RP1-251M9.3 3'Flank 0.26 TCGA-A6-6653-01 10 114849293 114849293 T C TCF7L2 Intron 0.63 TCGA-A6-6653-01 10 1170884 1170884 C A WDR37 Missense_Mutation p.L425I 0.41 tolerated(1) possibly_damaging(0.899) TCGA-A6-6653-01 10 1170951 1170951 G A WDR37 Missense_Mutation p.R447Q 0.37 deleterious(0.02) possibly_damaging(0.885) TCGA-A6-6653-01 10 119805321 119805322 CT - RAB11FIP2 Splice_Site p.X118_splice 0.39 TCGA-A6-6653-01 10 120896166 120896166 G A FAM45A 3'UTR 0.33 TCGA-A6-6653-01 10 122643322 122643322 A G WDR11 Silent p.K590K 0.47 TCGA-A6-6653-01 10 124753853 124753853 G A IKZF5 Missense_Mutation p.P235S 0.45 tolerated(0.21) benign(0.001) TCGA-A6-6653-01 10 126631145 126631145 G A ZRANB1 Missense_Mutation p.R28H 0.25 tolerated(0.32) benign(0.012) TCGA-A6-6653-01 10 127477371 127477371 G A UROS 3'UTR 0.42 TCGA-A6-6653-01 10 127542827 127542827 A - DHX32 Intron 0.41 TCGA-A6-6653-01 10 128193063 128193063 G A C10orf90 Missense_Mutation p.P236S 0.40 tolerated(0.18) benign(0.082) TCGA-A6-6653-01 10 12867588 12867588 C T CAMK1D Missense_Mutation p.T313M 0.48 deleterious(0) possibly_damaging(0.879) TCGA-A6-6653-01 10 129536912 129536912 G T FOXI2 Missense_Mutation p.G214W 0.30 deleterious(0.01) probably_damaging(0.979) TCGA-A6-6653-01 10 129902190 129902190 G A MKI67 Silent p.S2638S 0.49 TCGA-A6-6653-01 10 129903413 129903413 T C MKI67 Missense_Mutation p.T2231A 0.38 deleterious(0.03) possibly_damaging(0.642) TCGA-A6-6653-01 10 134598434 134598434 C T NKX6-2 Missense_Mutation p.G274R 0.53 deleterious_low_confidence(0) benign(0) TCGA-A6-6653-01 10 15255561 15255561 C T FAM171A1 Missense_Mutation p.A676T 0.31 tolerated(0.2) probably_damaging(1) TCGA-A6-6653-01 10 16932386 16932386 G A CUBN Silent p.S2913S 0.42 TCGA-A6-6653-01 10 24832276 24832276 C T KIAA1217 Silent p.N1359N 0.31 TCGA-A6-6653-01 10 27702951 27702951 G - PTCHD3 Frame_Shift_Del p.R77Gfs*43 0.35 TCGA-A6-6653-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.36 TCGA-A6-6653-01 10 35500603 35500603 C T CREM Nonsense_Mutation p.R259* 0.40 TCGA-A6-6653-01 10 45480314 45480314 G A RASSF4 Missense_Mutation p.A143T 0.46 deleterious(0.03) possibly_damaging(0.558) TCGA-A6-6653-01 10 46967674 46967674 G T SYT15 Missense_Mutation p.P135T 0.20 deleterious(0.02) benign(0.367) TCGA-A6-6653-01 10 48373046 48373046 G A ZNF488 3'UTR 0.52 TCGA-A6-6653-01 10 48388601 48388601 G A RBP3 Silent p.A759A 0.46 TCGA-A6-6653-01 10 49654487 49654487 A - ARHGAP22 Frame_Shift_Del p.S698Rfs*3 0.39 TCGA-A6-6653-01 10 51768759 51768759 C T AGAP6 Nonsense_Mutation p.R292* 0.40 TCGA-A6-6653-01 10 5567170 5567170 G A CALML3 Missense_Mutation p.G41D 0.52 tolerated_low_confidence(0.06) possibly_damaging(0.882) TCGA-A6-6653-01 10 63852750 63852750 T G ARID5B Silent p.S1176S 0.52 TCGA-A6-6653-01 10 64573486 64573486 G T EGR2 Silent p.A304A 0.41 TCGA-A6-6653-01 10 65354563 65354563 T - REEP3 Frame_Shift_Del p.F45Lfs*6 0.31 TCGA-A6-6653-01 10 69281658 69281658 T C CTNNA3 Missense_Mutation p.Y174C 0.42 deleterious(0) probably_damaging(0.926) TCGA-A6-6653-01 10 71018618 71018618 G A HKDC1 Missense_Mutation p.E707K 0.41 deleterious(0) probably_damaging(0.947) TCGA-A6-6653-01 10 7205835 7205835 G A SFMBT2 Missense_Mutation p.P861L 0.53 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 10 7409703 7409703 C T SFMBT2 Missense_Mutation p.R115H 0.16 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 10 75533460 75533460 C A FUT11 Silent p.A407A 0.50 TCGA-A6-6653-01 10 78644651 78644651 T - KCNMA1 3'Flank 0.33 TCGA-A6-6653-01 10 79397077 79397077 C T KCNMA1 Nonsense_Mutation p.W108* 0.31 TCGA-A6-6653-01 10 8006338 8006338 G A TAF3 Missense_Mutation p.A289T 0.51 tolerated_low_confidence(1) benign(0.001) TCGA-A6-6653-01 10 81917431 81917431 C T ANXA11 Missense_Mutation p.R475Q 0.29 tolerated(0.8) benign(0.246) TCGA-A6-6653-01 10 83635819 83635819 C A NRG3 Silent p.S241S 0.16 TCGA-A6-6653-01 10 83635831 83635831 T C NRG3 Silent p.S245S 0.14 TCGA-A6-6653-01 10 89264899 89264899 G A MINPP1 Missense_Mutation p.G76E 0.38 tolerated(0.51) benign(0.003) TCGA-A6-6653-01 10 93841234 93841234 C T CPEB3 Missense_Mutation p.R571H 0.46 deleterious(0.03) benign(0.323) TCGA-A6-6653-01 10 94834117 94834117 C T CYP26A1 Missense_Mutation p.T81M 0.28 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 10 99079883 99079883 C A FRAT1 Missense_Mutation p.L225M 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.832) TCGA-A6-6653-01 10 99416722 99416722 C T PI4K2A Missense_Mutation p.R275C 0.45 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 10 99655137 99655137 G A CRTAC1 Missense_Mutation p.R451C 0.32 tolerated(0.08) possibly_damaging(0.794) TCGA-A6-6653-01 10 99696085 99696086 - C CRTAC1 Frame_Shift_Ins p.A88Gfs*12 0.57 TCGA-A6-6653-01 11 102479783 102479783 C A MMP20 Silent p.L232L 0.54 TCGA-A6-6653-01 11 10582192 10582192 G T LYVE1 Missense_Mutation p.P185T 0.48 tolerated(0.38) benign(0) TCGA-A6-6653-01 11 107207381 107207381 A - CWF19L2 Frame_Shift_Del p.L754Wfs*5 0.30 TCGA-A6-6653-01 11 107299981 107299981 T - CWF19L2 Frame_Shift_Del p.N326Ifs*19 0.35 TCGA-A6-6653-01 11 108004588 108004588 T - ACAT1 Frame_Shift_Del p.L56* 0.41 TCGA-A6-6653-01 11 108142128 108142129 - T ATM Frame_Shift_Ins p.W1026Lfs*22 0.32 TCGA-A6-6653-01 11 110477314 110477314 C A ARHGAP20 Missense_Mutation p.S312I 0.38 deleterious(0.02) possibly_damaging(0.646) TCGA-A6-6653-01 11 111899614 111899614 C T DLAT Missense_Mutation p.S202L 0.45 tolerated(0.19) benign(0.002) TCGA-A6-6653-01 11 116734436 116734436 T C SIK3 Missense_Mutation p.K578R 0.43 tolerated_low_confidence(0.16) probably_damaging(0.993) TCGA-A6-6653-01 11 117374599 117374599 C A DSCAML1 Missense_Mutation p.G834C 0.44 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 11 118307545 118307545 C T KMT2A Silent p.L106L 0.33 TCGA-A6-6653-01 11 119216770 119216770 G A MFRP Missense_Mutation p.A86V 0.27 tolerated(0.07) benign(0.076) TCGA-A6-6653-01 11 11977731 11977731 G A USP47 3'UTR 0.36 TCGA-A6-6653-01 11 120957741 120957741 G A TBCEL Missense_Mutation p.R404Q 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-A6-6653-01 11 123753771 123753771 T C TMEM225 3'UTR 0.41 TCGA-A6-6653-01 11 1252769 1252769 G A MUC5B Missense_Mutation p.A553T 0.45 unknown(0) TCGA-A6-6653-01 11 125791189 125791189 G - DDX25 Frame_Shift_Del p.R437Afs*11 0.25 TCGA-A6-6653-01 11 128350147 128350147 G A ETS1 Silent p.D354D 0.41 TCGA-A6-6653-01 11 133792071 133792071 C T IGSF9B Splice_Site p.X776_splice 0.43 TCGA-A6-6653-01 11 134121143 134121143 C G THYN1 Missense_Mutation p.V35L 0.32 tolerated(0.36) benign(0.001) TCGA-A6-6653-01 11 1619203 1619203 C G KRTAP5-2 Missense_Mutation p.G93A 0.16 tolerated_low_confidence(0.21) unknown(0) TCGA-A6-6653-01 11 1619233 1619233 C G KRTAP5-2 Missense_Mutation p.G83A 0.38 tolerated_low_confidence(0.23) unknown(0) TCGA-A6-6653-01 11 16812634 16812634 A C PLEKHA7 Missense_Mutation p.V953G 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 11 17409234 17409234 C - KCNJ11 Frame_Shift_Del p.R136Afs*3 0.42 TCGA-A6-6653-01 11 17498235 17498235 G A ABCC8 Missense_Mutation p.A30V 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-A6-6653-01 11 17517187 17517187 G A USH1C Missense_Mutation p.P862S 0.37 tolerated_low_confidence(0.08) benign(0.01) TCGA-A6-6653-01 11 18194967 18194967 G A MRGPRX4 Missense_Mutation p.R55H 0.32 tolerated(0.38) benign(0.047) TCGA-A6-6653-01 11 1874321 1874321 G A LSP1 5'UTR 0.33 TCGA-A6-6653-01 11 1874353 1874353 G A LSP1 5'UTR 0.33 TCGA-A6-6653-01 11 20070407 20070407 G A NAV2 Missense_Mutation p.V1369I 0.35 tolerated(0.48) benign(0.001) TCGA-A6-6653-01 11 2170617 2170617 C T INS-IGF2 Intron 0.56 TCGA-A6-6653-01 11 22844519 22844519 T - SVIP 3'UTR 0.36 TCGA-A6-6653-01 11 2909568 2909568 G A SLC22A18AS Missense_Mutation p.R202C 0.40 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-A6-6653-01 11 299405 299405 G A IFITM5 Missense_Mutation p.P29L 0.52 tolerated(0.48) benign(0.016) TCGA-A6-6653-01 11 30601840 30601840 C T MPPED2 Silent p.T27T 0.41 TCGA-A6-6653-01 11 36595451 36595451 C T RAG1 Silent p.N199N 0.48 TCGA-A6-6653-01 11 43511894 43511894 C T TTC17 Missense_Mutation p.P1046S 0.50 tolerated(0.12) probably_damaging(0.998) TCGA-A6-6653-01 11 44286450 44286450 C T ALX4 Missense_Mutation p.R397H 0.42 deleterious(0) probably_damaging(0.995) TCGA-A6-6653-01 11 46401524 46401524 A G DGKZ 3'UTR 0.31 TCGA-A6-6653-01 11 46407099 46407099 A T CHRM4 Missense_Mutation p.S337T 0.29 tolerated(0.12) possibly_damaging(0.759) TCGA-A6-6653-01 11 46784272 46784272 G A CKAP5 Missense_Mutation p.A1311V 0.39 tolerated(0.08) possibly_damaging(0.474) TCGA-A6-6653-01 11 47266914 47266914 C A ACP2 Missense_Mutation p.G194V 0.44 deleterious(0) probably_damaging(0.996) TCGA-A6-6653-01 11 47460264 47460264 C - RAPSN Intron 0.43 TCGA-A6-6653-01 11 47593062 47593062 G A PTPMT1 Missense_Mutation p.A163T 0.56 tolerated(0.64) benign(0.011) TCGA-A6-6653-01 11 48161311 48161311 G A PTPRJ Missense_Mutation p.C809Y 0.37 deleterious(0) probably_damaging(0.996) TCGA-A6-6653-01 11 4976201 4976201 G A OR51A2 Missense_Mutation p.A248V 0.33 tolerated(0.07) possibly_damaging(0.764) TCGA-A6-6653-01 11 55944919 55944919 A G OR5J2 Missense_Mutation p.M276V 0.22 tolerated(1) benign(0) TCGA-A6-6653-01 11 56380260 56380260 G A OR5M1 Missense_Mutation p.T240M 0.32 deleterious(0.02) probably_damaging(0.985) TCGA-A6-6653-01 11 57099257 57099257 G A SSRP1 Missense_Mutation p.R370C 0.26 deleterious(0) possibly_damaging(0.577) TCGA-A6-6653-01 11 57995508 57995508 C T OR10Q1 Silent p.A280A 0.40 TCGA-A6-6653-01 11 58979815 58979815 A C MPEG1 Missense_Mutation p.L175R 0.17 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 11 59271892 59271892 C T OR4D11 Silent p.L282L 0.40 TCGA-A6-6653-01 11 605711 605711 G A PHRF1 Missense_Mutation p.V480M 0.29 tolerated(0.52) benign(0.009) TCGA-A6-6653-01 11 60698099 60698099 C T TMEM132A Silent p.C328C 0.43 TCGA-A6-6653-01 11 60704781 60704781 C T SLC15A3 Silent p.T552T 0.45 TCGA-A6-6653-01 11 614522 614522 G A IRF7 Missense_Mutation p.T149M 0.28 tolerated(0.26) benign(0.018) TCGA-A6-6653-01 11 61579992 61579992 G A FADS1 Missense_Mutation p.T212M 0.25 deleterious(0.04) benign(0.197) TCGA-A6-6653-01 11 61584180 61584180 C T FADS1 Silent p.P74P 0.44 TCGA-A6-6653-01 11 63057857 63057857 A G SLC22A10 Missense_Mutation p.R74G 0.42 deleterious(0) possibly_damaging(0.482) TCGA-A6-6653-01 11 63278563 63278563 A C LGALS12 Missense_Mutation p.M205L 0.47 tolerated(0.74) benign(0.001) TCGA-A6-6653-01 11 63671582 63671582 C - MARK2 Frame_Shift_Del p.T549Rfs*67 0.29 TCGA-A6-6653-01 11 64000319 64000319 T C DNAJC4 Missense_Mutation p.L170P 0.50 deleterious(0.01) probably_damaging(0.961) TCGA-A6-6653-01 11 64534511 64534511 C T SF1 Silent p.P606P 0.53 TCGA-A6-6653-01 11 64601793 64601793 G T CDC42BPG Silent p.A786A 0.83 TCGA-A6-6653-01 11 64668021 64668021 G A ATG2A Missense_Mutation p.T1470M 0.20 tolerated(0.1) benign(0.017) TCGA-A6-6653-01 11 64981652 64981652 C T CAPN1 3'Flank 0.22 TCGA-A6-6653-01 11 65347730 65347730 C T EHBP1L1 Missense_Mutation p.T164M 0.56 deleterious(0) probably_damaging(0.972) TCGA-A6-6653-01 11 65365834 65365835 - C MAP3K11 Frame_Shift_Ins p.Q826Pfs*36 0.43 TCGA-A6-6653-01 11 65386151 65386151 C T PCNXL3 Missense_Mutation p.R440C 0.27 deleterious(0.01) possibly_damaging(0.528) TCGA-A6-6653-01 11 65387053 65387053 G A PCNXL3 Missense_Mutation p.R584Q 0.27 deleterious(0.01) probably_damaging(0.97) TCGA-A6-6653-01 11 65546519 65546519 A G AP5B1 Missense_Mutation p.V482A 0.24 tolerated(0.4) benign(0.009) TCGA-A6-6653-01 11 65638704 65638704 C T EFEMP2 Silent p.P97P 0.45 TCGA-A6-6653-01 11 66029316 66029316 A G KLC2 Missense_Mutation p.E111G 0.38 deleterious(0) possibly_damaging(0.861) TCGA-A6-6653-01 11 66055105 66055105 G - YIF1A Frame_Shift_Del p.R131Gfs*50 0.39 TCGA-A6-6653-01 11 66114724 66114724 G C B3GNT1 Missense_Mutation p.A98G 0.42 deleterious(0.02) probably_damaging(0.972) TCGA-A6-6653-01 11 66188687 66188687 C T NPAS4 Missense_Mutation p.R13W 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 11 66254126 66254126 G A DPP3 Missense_Mutation p.R159Q 0.36 tolerated(0.17) benign(0.023) TCGA-A6-6653-01 11 66322063 66322063 C T CTD-3074O7.2 3'Flank 0.37 TCGA-A6-6653-01 11 66456219 66456219 C T SPTBN2 Missense_Mutation p.D2046N 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6653-01 11 67286511 67286511 G A CABP2 3'UTR 0.32 TCGA-A6-6653-01 11 67400458 67400458 C A TBX10 Missense_Mutation p.E222D 0.43 deleterious(0.02) possibly_damaging(0.58) TCGA-A6-6653-01 11 67800439 67800439 C T NDUFS8 Silent p.D53D 0.48 TCGA-A6-6653-01 11 69518098 69518098 G A FGF19 Silent p.T89T 0.12 TCGA-A6-6653-01 11 721655 721655 A G EPS8L2 Missense_Mutation p.K287E 0.34 deleterious(0) possibly_damaging(0.507) TCGA-A6-6653-01 11 72409019 72409019 G A ARAP1 Missense_Mutation p.R892C 0.41 tolerated(0.07) benign(0.004) TCGA-A6-6653-01 11 72423258 72423258 G - ARAP1 Frame_Shift_Del p.D335Efs*16 0.38 TCGA-A6-6653-01 11 8061234 8061234 C T TUB Silent p.I66I 0.40 TCGA-A6-6653-01 11 822526 822526 C T PNPLA2 Missense_Mutation p.R206W 0.45 deleterious(0) probably_damaging(0.995) TCGA-A6-6653-01 11 82643418 82643418 G T C11orf82 Missense_Mutation p.E346D 0.44 tolerated(0.17) benign(0.037) TCGA-A6-6653-01 11 82698464 82698464 G T RAB30 Intron 0.53 TCGA-A6-6653-01 11 88027607 88027607 G T CTSC Missense_Mutation p.A320D 0.39 tolerated(0.72) benign(0.001) TCGA-A6-6653-01 11 93103237 93103238 - C CCDC67 Splice_Site p.X145_splice 0.14 TCGA-A6-6653-01 11 94204877 94204877 G A MRE11A Silent p.D236D 0.43 TCGA-A6-6653-01 11 9442208 9442208 A G IPO7 Missense_Mutation p.E290G 0.45 deleterious(0.01) possibly_damaging(0.899) TCGA-A6-6653-01 11 9749627 9749627 C T SWAP70 Missense_Mutation p.R224W 0.53 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 11 986922 986922 C T AP2A2 Missense_Mutation p.T367M 0.35 deleterious(0.05) benign(0.403) TCGA-A6-6653-01 12 104129348 104129348 G A STAB2 Missense_Mutation p.G1847D 0.50 tolerated(0.5) benign(0.011) TCGA-A6-6653-01 12 107078529 107078529 C T RFX4 Intron 0.32 TCGA-A6-6653-01 12 110293474 110293474 C T GLTP Missense_Mutation p.E133K 0.48 tolerated(0.13) benign(0.065) TCGA-A6-6653-01 12 110418818 110418818 G A GIT2 Silent p.L219L 0.44 TCGA-A6-6653-01 12 111088053 111088053 G A HVCN1 Missense_Mutation p.R226W 0.35 deleterious(0) benign(0.126) TCGA-A6-6653-01 12 112308895 112308895 C T MAPKAPK5 Missense_Mutation p.P164S 0.48 tolerated(0.06) possibly_damaging(0.542) TCGA-A6-6653-01 12 112607395 112607395 C T HECTD4 Silent p.S3894S 0.43 TCGA-A6-6653-01 12 113435356 113435356 T G OAS2 Missense_Mutation p.L220R 0.44 deleterious(0.02) benign(0.078) TCGA-A6-6653-01 12 113573446 113573446 C T RASAL1 Intron 0.44 TCGA-A6-6653-01 12 118199118 118199118 G T KSR2 Silent p.T228T 0.60 TCGA-A6-6653-01 12 120151399 120151399 C T CIT Missense_Mutation p.G1454D 0.46 deleterious(0) probably_damaging(0.935) TCGA-A6-6653-01 12 120572117 120572117 A G GCN1L1 Missense_Mutation p.L2432P 0.45 benign(0.401) TCGA-A6-6653-01 12 121764935 121764935 G A ANAPC5 Silent p.V468V 0.56 TCGA-A6-6653-01 12 122017957 122017957 T - KDM2B Intron 0.50 TCGA-A6-6653-01 12 122018711 122018711 C T KDM2B Missense_Mutation p.E36K 0.33 tolerated_low_confidence(0.44) benign(0) TCGA-A6-6653-01 12 12273985 12273985 C - LRP6 3'UTR 0.57 TCGA-A6-6653-01 12 123089482 123089482 G A KNTC1 Missense_Mutation p.R1745Q 0.08 deleterious(0.01) benign(0.244) TCGA-A6-6653-01 12 123187098 123187098 G A HCAR2 Missense_Mutation p.L245F 0.14 tolerated(0.22) possibly_damaging(0.681) TCGA-A6-6653-01 12 123200552 123200552 G A HCAR3 Missense_Mutation p.L245F 0.24 tolerated(0.3) probably_damaging(0.971) TCGA-A6-6653-01 12 123793880 123793880 C T SBNO1 Missense_Mutation p.D1203N 0.38 deleterious(0.02) possibly_damaging(0.565) TCGA-A6-6653-01 12 124421709 124421709 C T CCDC92 Missense_Mutation p.A298T 0.26 tolerated_low_confidence(0.09) benign(0.003) TCGA-A6-6653-01 12 124979793 124979793 G A NCOR2 Missense_Mutation p.S2L 0.49 unknown(0) TCGA-A6-6653-01 12 125550122 125550122 G A AACS 5'UTR 0.19 TCGA-A6-6653-01 12 12870988 12870988 G A CDKN1B Missense_Mutation p.G72D 0.74 tolerated(0.05) probably_damaging(1) TCGA-A6-6653-01 12 12974213 12974213 G A DDX47 Missense_Mutation p.A85T 0.41 tolerated(0.12) benign(0.013) TCGA-A6-6653-01 12 130847651 130847652 - T PIWIL1 Frame_Shift_Ins p.L721Ffs*9 0.35 TCGA-A6-6653-01 12 131359262 131359262 G A RAN Missense_Mutation p.R140Q 0.40 tolerated(0.06) benign(0.112) TCGA-A6-6653-01 12 132401561 132401561 G A ULK1 Silent p.P712P 0.38 TCGA-A6-6653-01 12 132530096 132530096 G A EP400 Silent p.A2339A 0.35 TCGA-A6-6653-01 12 132631841 132631841 G A NOC4L Missense_Mutation p.A121T 0.31 tolerated(1) benign(0.002) TCGA-A6-6653-01 12 20801672 20801672 T C PDE3A Silent p.A872A 0.41 TCGA-A6-6653-01 12 21015421 21015421 C - SLCO1B3 Frame_Shift_Del p.I188* 0.37 TCGA-A6-6653-01 12 21353443 21353443 T - SLCO1B1 Frame_Shift_Del p.F326Sfs*19 0.31 TCGA-A6-6653-01 12 25368481 25368481 G T KRAS Missense_Mutation p.A155D 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 12 2743462 2743462 G A CACNA1C Splice_Site p.X1325_splice 0.25 TCGA-A6-6653-01 12 29592360 29592360 G A OVCH1 Silent p.F1055F 0.39 TCGA-A6-6653-01 12 307980 307980 G A SLC6A12 Missense_Mutation p.R277C 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 12 3600842 3600842 G A PRMT8 Silent p.A17A 0.48 TCGA-A6-6653-01 12 39716521 39716521 C T KIF21A Missense_Mutation p.R1207K 0.43 tolerated(0.17) benign(0.005) TCGA-A6-6653-01 12 40223910 40223910 C A SLC2A13 Missense_Mutation p.W480C 0.36 tolerated(0.08) possibly_damaging(0.719) TCGA-A6-6653-01 12 40722215 40722215 G A LRRK2 Missense_Mutation p.A1904T 0.46 deleterious(0.02) possibly_damaging(0.529) TCGA-A6-6653-01 12 416949 416949 A G KDM5A Missense_Mutation p.S1201P 0.42 tolerated(0.15) benign(0.02) TCGA-A6-6653-01 12 41967744 41967744 G T PDZRN4 3'UTR 0.08 TCGA-A6-6653-01 12 43945026 43945026 G A ADAMTS20 Missense_Mutation p.R47W 0.52 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 12 46320482 46320482 T - SCAF11 Frame_Shift_Del p.N1001Mfs*5 0.33 TCGA-A6-6653-01 12 46598120 46598120 G A SLC38A1 Silent p.D262D 0.35 TCGA-A6-6653-01 12 48142635 48142635 C T RAPGEF3 Missense_Mutation p.G374D 0.43 deleterious(0.03) benign(0.342) TCGA-A6-6653-01 12 49168801 49168801 C T ADCY6 Missense_Mutation p.V673I 0.47 tolerated(0.12) probably_damaging(0.994) TCGA-A6-6653-01 12 49446069 49446069 C T KMT2D Missense_Mutation p.R466H 0.33 unknown(0) TCGA-A6-6653-01 12 50043288 50043288 C T FMNL3 Missense_Mutation p.V757I 0.29 tolerated(1) probably_damaging(0.965) TCGA-A6-6653-01 12 52201152 52201152 C T SCN8A Missense_Mutation p.A1961V 0.32 tolerated_low_confidence(0.57) benign(0) TCGA-A6-6653-01 12 53878130 53878130 G A MAP3K12 Missense_Mutation p.R387C 0.42 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 12 54367483 54367483 G A HOXC11 Missense_Mutation p.R153H 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-A6-6653-01 12 54920345 54920345 G A NCKAP1L Silent p.T730T 0.33 TCGA-A6-6653-01 12 55523871 55523871 A G OR9K2 Missense_Mutation p.M107V 0.35 deleterious(0) benign(0.04) TCGA-A6-6653-01 12 55846629 55846629 G A OR6C2 Missense_Mutation p.C211Y 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.51) TCGA-A6-6653-01 12 56231785 56231785 C T MMP19 Missense_Mutation p.R301H 0.33 tolerated(0.54) benign(0.002) TCGA-A6-6653-01 12 56558132 56558132 C T SMARCC2 Missense_Mutation p.A1175T 0.42 deleterious_low_confidence(0) unknown(0) TCGA-A6-6653-01 12 56641360 56641360 C T ANKRD52 Missense_Mutation p.V701M 0.33 tolerated(0.05) probably_damaging(0.926) TCGA-A6-6653-01 12 56647529 56647529 C T ANKRD52 Missense_Mutation p.R321H 0.44 deleterious(0) probably_damaging(0.995) TCGA-A6-6653-01 12 57423538 57423538 G A MYO1A Missense_Mutation p.R904C 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 12 57574202 57574202 C T LRP1 Silent p.L1776L 0.24 TCGA-A6-6653-01 12 57603909 57603909 C T LRP1 Silent p.N4179N 0.28 TCGA-A6-6653-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.45 TCGA-A6-6653-01 12 58122001 58122001 G - AGAP2-AS1 3'UTR 0.36 TCGA-A6-6653-01 12 6334598 6334598 G A CD9 Missense_Mutation p.G25R 0.36 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 12 6344457 6344457 G A CD9 Silent p.E137E 0.26 TCGA-A6-6653-01 12 63541331 63541331 G A AVPR1A Silent p.L355L 0.49 TCGA-A6-6653-01 12 64062050 64062050 G T DPY19L2 Missense_Mutation p.L42I 0.30 tolerated_low_confidence(0.29) benign(0.023) TCGA-A6-6653-01 12 64458995 64458995 A G SRGAP1 Missense_Mutation p.E374G 0.47 deleterious(0.01) possibly_damaging(0.889) TCGA-A6-6653-01 12 6635473 6635473 C - NCAPD2 Frame_Shift_Del p.F837Sfs*36 0.33 TCGA-A6-6653-01 12 6782540 6782540 G A ZNF384 Silent p.T251T 0.42 TCGA-A6-6653-01 12 68051250 68051250 C T DYRK2 Missense_Mutation p.A188V 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-A6-6653-01 12 68054159 68054159 A - DYRK2 3'UTR 0.34 TCGA-A6-6653-01 12 69652636 69652636 G T CPSF6 Missense_Mutation p.G321C 0.34 deleterious(0.04) unknown(0) TCGA-A6-6653-01 12 70188978 70188978 C A RAB3IP Missense_Mutation p.P264T 0.49 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 12 70732480 70732480 G A CNOT2 Silent p.T352T 0.33 TCGA-A6-6653-01 12 71016267 71016267 C T PTPRB Missense_Mutation p.S204N 0.41 tolerated_low_confidence(0.06) possibly_damaging(0.471) TCGA-A6-6653-01 12 7459282 7459282 G A ACSM4 Missense_Mutation p.V119M 0.42 tolerated(0.07) benign(0.317) TCGA-A6-6653-01 12 7559406 7559406 C T CD163L1 Missense_Mutation p.R270H 0.31 tolerated(0.2) benign(0.001) TCGA-A6-6653-01 12 75672819 75672819 A G CAPS2 Intron 0.33 TCGA-A6-6653-01 12 7632511 7632511 T - CD163 Frame_Shift_Del p.K1142Rfs*5 0.39 TCGA-A6-6653-01 12 77417804 77417804 G A E2F7 Silent p.G909G 0.45 TCGA-A6-6653-01 12 81661780 81661780 C T PPFIA2 Missense_Mutation p.G1133S 0.41 deleterious(0) probably_damaging(0.997) TCGA-A6-6653-01 12 81719649 81719649 C T PPFIA2 Missense_Mutation p.R850Q 0.42 tolerated(0.26) benign(0.005) TCGA-A6-6653-01 12 85255750 85255750 T C SLC6A15 Silent p.G618G 0.55 TCGA-A6-6653-01 12 86373303 86373303 G A MGAT4C Missense_Mutation p.R401W 0.30 deleterious(0) probably_damaging(0.972) TCGA-A6-6653-01 12 88910256 88910256 T - KITLG Frame_Shift_Del p.K125Nfs*31 0.39 TCGA-A6-6653-01 12 95911790 95911790 A - USP44 3'UTR 0.88 TCGA-A6-6653-01 12 97339561 97339561 C T NEDD1 Missense_Mutation p.A589V 0.31 deleterious(0.02) benign(0.226) TCGA-A6-6653-01 13 103387000 103387000 G A CCDC168 Silent p.V720V 0.34 TCGA-A6-6653-01 13 111329326 111329326 G A CARS2 Silent p.I260I 0.31 TCGA-A6-6653-01 13 111329405 111329405 G A CARS2 Missense_Mutation p.A234V 0.27 deleterious(0.01) benign(0.178) TCGA-A6-6653-01 13 113889431 113889431 G A CUL4A Missense_Mutation p.V274I 0.40 tolerated(0.2) benign(0.004) TCGA-A6-6653-01 13 114107550 114107550 G A ADPRHL1 Missense_Mutation p.A68V 0.51 deleterious(0) probably_damaging(0.938) TCGA-A6-6653-01 13 19751342 19751342 G A TUBA3C Missense_Mutation p.P261S 0.21 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-A6-6653-01 13 20315724 20315724 G A PSPC1 Missense_Mutation p.R345W 0.38 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 13 24443583 24443583 C T MIPEP Missense_Mutation p.R264Q 0.39 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 13 25670397 25670397 G A PABPC3 Missense_Mutation p.D21N 0.47 deleterious(0) possibly_damaging(0.836) TCGA-A6-6653-01 13 25743818 25743818 C T AMER2 Missense_Mutation p.R647H 0.45 deleterious(0.03) probably_damaging(0.998) TCGA-A6-6653-01 13 27845805 27845805 G A RASL11A Missense_Mutation p.E71K 0.31 deleterious(0) possibly_damaging(0.895) TCGA-A6-6653-01 13 33590827 33590827 C T KL Silent p.H83H 0.36 TCGA-A6-6653-01 13 35730247 35730248 - A NBEA Frame_Shift_Ins p.N854Kfs*18 0.22 TCGA-A6-6653-01 13 39542596 39542596 C T STOML3 Missense_Mutation p.V198M 0.59 tolerated(0.17) benign(0.026) TCGA-A6-6653-01 13 39598633 39598633 G A PROSER1 Nonsense_Mutation p.R181* 0.18 TCGA-A6-6653-01 13 41340976 41340976 G A MRPS31 Nonsense_Mutation p.R116* 0.06 TCGA-A6-6653-01 13 41767871 41767871 C T KBTBD7 Missense_Mutation p.A175T 0.44 deleterious(0.04) possibly_damaging(0.625) TCGA-A6-6653-01 13 42385434 42385434 G A VWA8 Nonsense_Mutation p.R664* 0.28 TCGA-A6-6653-01 13 46086122 46086122 T C COG3 Intron 0.35 TCGA-A6-6653-01 13 47315891 47315891 C T LRCH1 Missense_Mutation p.R734C 0.40 tolerated(0.1) benign(0.023) TCGA-A6-6653-01 13 49933960 49933960 T - CAB39L Frame_Shift_Del p.D96Mfs*2 0.41 TCGA-A6-6653-01 13 49951208 49951208 G A CAB39L Silent p.N57N 0.26 TCGA-A6-6653-01 13 52332341 52332341 G T WDFY2 Missense_Mutation p.A360S 0.28 deleterious(0.05) benign(0.058) TCGA-A6-6653-01 13 52604208 52604208 A G UTP14C Missense_Mutation p.E423G 0.40 deleterious(0.05) benign(0.084) TCGA-A6-6653-01 13 52684694 52684694 T C NEK5 Missense_Mutation p.Q111R 0.30 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 13 58208567 58208567 C T PCDH17 Silent p.D629D 0.45 TCGA-A6-6653-01 13 77748601 77748601 G A MYCBP2 Silent p.R1794R 0.41 TCGA-A6-6653-01 13 78320947 78320947 T C SLAIN1 Silent p.P241P 0.47 TCGA-A6-6653-01 13 84455804 84455804 C - SLITRK1 5'UTR 0.33 TCGA-A6-6653-01 13 88328469 88328469 G A SLITRK5 Missense_Mutation p.D276N 0.41 tolerated(0.68) benign(0.082) TCGA-A6-6653-01 13 92003379 92003380 - A MIR17HG RNA 0.34 TCGA-A6-6653-01 13 96205005 96205005 G A CLDN10 5'UTR 0.43 TCGA-A6-6653-01 13 96443252 96443252 G A DNAJC3 Missense_Mutation p.G495R 0.33 deleterious(0) probably_damaging(0.989) TCGA-A6-6653-01 13 98828147 98828147 T C RNF113B 3'UTR 0.18 TCGA-A6-6653-01 13 99452616 99452616 G A DOCK9 Missense_Mutation p.R1962W 0.36 deleterious(0) probably_damaging(0.963) TCGA-A6-6653-01 13 99515320 99515320 G A DOCK9 Missense_Mutation p.R1178W 0.12 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 13 99515732 99515732 C A DOCK9 Missense_Mutation p.R1119S 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 14 102028237 102028237 C T DIO3 Missense_Mutation p.A135V 0.59 deleterious(0) benign(0.343) TCGA-A6-6653-01 14 104195498 104195498 A G ZFYVE21 Missense_Mutation p.T169A 0.38 tolerated(0.14) benign(0.007) TCGA-A6-6653-01 14 105411303 105411303 C T AHNAK2 Silent p.S3495S 0.11 TCGA-A6-6653-01 14 105416058 105416058 A G AHNAK2 Silent p.D1910D 0.15 TCGA-A6-6653-01 14 105418429 105418429 G - AHNAK2 Frame_Shift_Del p.P1120Lfs*37 0.32 TCGA-A6-6653-01 14 105421014 105421014 C T AHNAK2 Silent p.R258R 0.49 TCGA-A6-6653-01 14 105849152 105849152 C T PACS2 Silent p.S509S 0.45 TCGA-A6-6653-01 14 105996539 105996539 C T TMEM121 3'UTR 0.31 TCGA-A6-6653-01 14 106091263 106091263 A G IGHG4 Missense_Mutation p.S211P 0.14 tolerated(1) benign(0) TCGA-A6-6653-01 14 106091266 106091266 A C IGHG4 Missense_Mutation p.S210A 0.14 tolerated(0.94) benign(0.003) TCGA-A6-6653-01 14 106091267 106091267 C T IGHG4 Silent p.P209P 0.13 TCGA-A6-6653-01 14 106109966 106109966 T C IGHG2 Missense_Mutation p.T218A 0.18 tolerated(1) benign(0) TCGA-A6-6653-01 14 106110082 106110082 A T IGHG2 Missense_Mutation p.F179Y 0.22 tolerated(1) benign(0.001) TCGA-A6-6653-01 14 106452921 106452921 C T IGHV1-2 Missense_Mutation p.G34E 0.45 deleterious(0) possibly_damaging(0.619) TCGA-A6-6653-01 14 106667654 106667654 T C IGHV3-20 Missense_Mutation p.N93S 0.44 deleterious_low_confidence(0) possibly_damaging(0.685) TCGA-A6-6653-01 14 21841565 21841565 C T SUPT16H Missense_Mutation p.V31I 0.17 tolerated(0.34) benign(0.003) TCGA-A6-6653-01 14 21859140 21859140 G A CHD8 Missense_Mutation p.P2383L 0.38 deleterious(0.01) benign(0.002) TCGA-A6-6653-01 14 21873368 21873368 C A CHD8 Missense_Mutation p.G1103C 0.19 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 14 23902429 23902429 G A MYH7 Missense_Mutation p.T70I 0.24 tolerated(0.05) possibly_damaging(0.907) TCGA-A6-6653-01 14 24659702 24659702 G A TM9SF1 Silent p.N437N 0.29 TCGA-A6-6653-01 14 24911630 24911630 G T SDR39U1 Silent p.A15A 0.09 TCGA-A6-6653-01 14 31091559 31091559 G A SCFD1 Silent p.A5A 0.54 TCGA-A6-6653-01 14 35871854 35871854 G A NFKBIA Missense_Mutation p.R218W 0.48 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 14 36154324 36154324 C A RALGAPA1 Missense_Mutation p.G863C 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-A6-6653-01 14 37051530 37051530 G A NKX2-8 Missense_Mutation p.A22V 0.55 tolerated(0.09) benign(0.011) TCGA-A6-6653-01 14 42357189 42357190 - T LRFN5 Frame_Shift_Ins p.Y455Lfs*2 0.31 TCGA-A6-6653-01 14 45403535 45403535 G A KLHL28 Nonsense_Mutation p.R376* 0.10 TCGA-A6-6653-01 14 45564427 45564427 G A PRPF39 5'UTR 0.51 TCGA-A6-6653-01 14 47426705 47426705 G A MDGA2 Missense_Mutation p.T654M 0.14 tolerated(0.2) benign(0.022) TCGA-A6-6653-01 14 50585274 50585274 G A SOS2 Missense_Mutation p.P1263S 0.45 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-A6-6653-01 14 55310812 55310812 C T GCH1 Missense_Mutation p.V226M 0.33 deleterious(0.03) possibly_damaging(0.537) TCGA-A6-6653-01 14 55819468 55819468 C T FBXO34 3'UTR 0.08 TCGA-A6-6653-01 14 59114315 59114315 G A DACT1 3'Flank 0.29 TCGA-A6-6653-01 14 61278823 61278823 A C MNAT1 Missense_Mutation p.K180T 0.42 deleterious(0) probably_damaging(0.984) TCGA-A6-6653-01 14 62547864 62547864 C T SYT16 Missense_Mutation p.R436C 0.44 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 14 63246526 63246526 G A KCNH5 Missense_Mutation p.L647F 0.08 deleterious(0.03) possibly_damaging(0.776) TCGA-A6-6653-01 14 64749598 64749598 A G ESR2 Missense_Mutation p.Y36H 0.48 deleterious(0) probably_damaging(0.994) TCGA-A6-6653-01 14 65235818 65235818 G A SPTB Nonsense_Mutation p.Q1986* 0.42 TCGA-A6-6653-01 14 65520041 65520041 G - FNTB Frame_Shift_Del p.L350Ffs*18 0.50 TCGA-A6-6653-01 14 68248072 68248072 G A ZFYVE26 Missense_Mutation p.A1516V 0.39 tolerated(0.18) benign(0.002) TCGA-A6-6653-01 14 73958538 73958538 G A HEATR4 Intron 0.52 TCGA-A6-6653-01 14 74753070 74753070 G A ABCD4 3'UTR 0.38 TCGA-A6-6653-01 14 75264760 75264760 G A YLPM1 Silent p.E920E 0.45 TCGA-A6-6653-01 14 75537722 75537722 C T ZC2HC1C Missense_Mutation p.S149L 0.27 deleterious(0.02) possibly_damaging(0.656) TCGA-A6-6653-01 14 76437535 76437535 G A TGFB3 Missense_Mutation p.R194W 0.26 deleterious(0) possibly_damaging(0.907) TCGA-A6-6653-01 14 78036765 78036765 C T SPTLC2 Missense_Mutation p.A240T 0.45 deleterious(0) benign(0.4) TCGA-A6-6653-01 14 78205334 78205334 C A SNW1 Missense_Mutation p.R134M 0.34 deleterious(0.04) benign(0.025) TCGA-A6-6653-01 14 81659075 81659075 C T GTF2A1 Missense_Mutation p.A241T 0.41 tolerated(0.53) probably_damaging(0.989) TCGA-A6-6653-01 14 81744317 81744317 C A STON2 Missense_Mutation p.W446C 0.19 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 14 86089263 86089263 C A FLRT2 Missense_Mutation p.R469S 0.36 tolerated(0.44) benign(0.047) TCGA-A6-6653-01 14 86092593 86092593 G A FLRT2 3'UTR 0.34 TCGA-A6-6653-01 14 89629057 89629057 C T FOXN3 Missense_Mutation p.D392N 0.09 deleterious(0.03) benign(0.391) TCGA-A6-6653-01 14 89878534 89878534 G - FOXN3 Frame_Shift_Del p.P96Hfs*42 0.33 TCGA-A6-6653-01 14 90745468 90745468 C T NRDE2 Missense_Mutation p.G1103R 0.10 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 14 91805641 91805641 G A CCDC88C Missense_Mutation p.R264W 0.39 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 14 92347725 92347725 G A FBLN5 Silent p.N300N 0.35 TCGA-A6-6653-01 14 92908507 92908507 G A SLC24A4 Silent p.A156A 0.37 TCGA-A6-6653-01 14 94849117 94849117 T G SERPINA1 Missense_Mutation p.K153T 0.45 tolerated(0.07) benign(0.381) TCGA-A6-6653-01 14 95669909 95669909 C T CLMN Missense_Mutation p.E593K 0.41 tolerated_low_confidence(0.17) benign(0.009) TCGA-A6-6653-01 14 99641914 99641914 G - BCL11B Frame_Shift_Del p.P420Rfs*55 0.27 TCGA-A6-6653-01 14 99697842 99697842 G T BCL11B Silent p.S160S 0.40 TCGA-A6-6653-01 14 99969115 99969116 - C CCNK Frame_Shift_Ins p.H271Pfs*64 0.49 TCGA-A6-6653-01 15 100185846 100185846 C G MEF2A Silent p.L45L 0.79 TCGA-A6-6653-01 15 20644806 20644806 C A HERC2P3 RNA 0.22 TCGA-A6-6653-01 15 22369266 22369266 T G OR4M2 Missense_Mutation p.S231A 0.16 tolerated(0.21) benign(0.014) TCGA-A6-6653-01 15 24923624 24923624 A G NPAP1 Silent p.Q870Q 0.36 TCGA-A6-6653-01 15 24925325 24925325 C A NPAP1 3'UTR 0.35 TCGA-A6-6653-01 15 27128619 27128619 G A GABRA5 Missense_Mutation p.G138R 0.42 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 15 27772638 27772638 C T GABRG3 Missense_Mutation p.R309C 0.34 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 15 28389862 28389862 G A HERC2 Silent p.G3699G 0.28 TCGA-A6-6653-01 15 28478848 28478848 C T HERC2 Missense_Mutation p.R1438H 0.36 possibly_damaging(0.899) TCGA-A6-6653-01 15 28515923 28515923 G A HERC2 Missense_Mutation p.T392M 0.40 possibly_damaging(0.813) TCGA-A6-6653-01 15 29406115 29406115 G - APBA2 Frame_Shift_Del p.G693Afs*24 0.52 TCGA-A6-6653-01 15 29415750 29415750 G A FAM189A1 Missense_Mutation p.A471V 0.40 tolerated(0.17) benign(0.1) TCGA-A6-6653-01 15 31197140 31197140 G A FAN1 Missense_Mutation p.V92I 0.32 tolerated(0.5) benign(0.002) TCGA-A6-6653-01 15 33927976 33927976 G A RYR3 Missense_Mutation p.E1113K 0.35 probably_damaging(0.999) TCGA-A6-6653-01 15 33955002 33955002 G T RYR3 Missense_Mutation p.E1757D 0.23 benign(0.002) TCGA-A6-6653-01 15 34355972 34355973 - A CHRM5 Frame_Shift_Ins p.S354Kfs*2 0.27 TCGA-A6-6653-01 15 40627441 40627441 G A C15orf52 Missense_Mutation p.T508M 0.60 deleterious_low_confidence(0) benign(0.157) TCGA-A6-6653-01 15 41063454 41063454 G - C15orf62 3'UTR 0.35 TCGA-A6-6653-01 15 41195558 41195558 G - VPS18 3'UTR 0.47 TCGA-A6-6653-01 15 41689216 41689216 G C NDUFAF1 Silent p.L14L 0.23 TCGA-A6-6653-01 15 41772794 41772794 C T RTF1 Missense_Mutation p.A681V 0.20 tolerated(0.27) benign(0.062) TCGA-A6-6653-01 15 44059104 44059104 T C PDIA3 Missense_Mutation p.F342L 0.78 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 15 44093782 44093782 C A HYPK Intron 0.84 TCGA-A6-6653-01 15 44165537 44165538 - A FRMD5 3'UTR 0.88 TCGA-A6-6653-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.61 TCGA-A6-6653-01 15 50891375 50891375 A G TRPM7 Missense_Mutation p.I1036T 0.77 deleterious(0) possibly_damaging(0.861) TCGA-A6-6653-01 15 53992110 53992110 G A WDR72 Silent p.C534C 0.82 TCGA-A6-6653-01 15 54305922 54305922 C T UNC13C Silent p.I274I 0.85 TCGA-A6-6653-01 15 54685302 54685302 T - UNC13C Frame_Shift_Del p.W1592Gfs*7 0.49 TCGA-A6-6653-01 15 58933105 58933105 T C ADAM10 Missense_Mutation p.I295V 0.76 tolerated(0.1) benign(0.05) TCGA-A6-6653-01 15 59510113 59510113 G A MYO1E Missense_Mutation p.R362W 0.85 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 15 63555910 63555910 C T RAB8B 3'UTR 0.93 TCGA-A6-6653-01 15 64067507 64067507 G A HERC1 Nonsense_Mutation p.R106* 0.80 TCGA-A6-6653-01 15 64706391 64706391 T C TRIP4 Missense_Mutation p.M384T 0.91 deleterious(0) benign(0.032) TCGA-A6-6653-01 15 73590919 73590919 G A NEO1 Missense_Mutation p.A1378T 0.76 tolerated(0.25) benign(0.026) TCGA-A6-6653-01 15 74426770 74426770 C T ISLR2 Missense_Mutation p.R559W 0.78 deleterious(0.01) possibly_damaging(0.609) TCGA-A6-6653-01 15 77906984 77906984 C T LINGO1 Missense_Mutation p.R422H 0.24 deleterious(0.03) benign(0.01) TCGA-A6-6653-01 15 85384063 85384063 C A ALPK3 Missense_Mutation p.P720H 0.26 deleterious_low_confidence(0.02) benign(0.014) TCGA-A6-6653-01 15 89430539 89430539 C T HAPLN3 5'UTR 0.12 TCGA-A6-6653-01 15 89859550 89859551 - T POLG 3'UTR 0.71 TCGA-A6-6653-01 15 90128969 90128969 C T TICRR Missense_Mutation p.P403S 0.13 tolerated(0.59) benign(0.073) TCGA-A6-6653-01 15 91493385 91493385 C T UNC45A Missense_Mutation p.A692V 0.91 tolerated(0.16) benign(0.022) TCGA-A6-6653-01 15 91496994 91496994 G A UNC45A 3'UTR 0.73 TCGA-A6-6653-01 15 93173523 93173523 C T FAM174B Missense_Mutation p.A133T 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-A6-6653-01 15 99678237 99678237 C T TTC23 Missense_Mutation p.R441Q 0.34 deleterious(0.04) benign(0.027) TCGA-A6-6653-01 16 1129258 1129258 G A SSTR5 Silent p.L130L 0.60 TCGA-A6-6653-01 16 1252154 1252154 C T CACNA1H Silent p.D568D 0.64 TCGA-A6-6653-01 16 14041895 14041895 G A ERCC4 Silent p.E814E 0.14 TCGA-A6-6653-01 16 1451598 1451598 T G UNKL Missense_Mutation p.K190T 0.35 deleterious(0.04) benign(0.118) TCGA-A6-6653-01 16 15155494 15155494 C T RRN3 3'UTR 0.45 TCGA-A6-6653-01 16 15718904 15718904 C - KIAA0430 Frame_Shift_Del p.V694Wfs*25 0.40 TCGA-A6-6653-01 16 19089418 19089418 G A COQ7 Missense_Mutation p.V198I 0.36 tolerated(0.45) benign(0.005) TCGA-A6-6653-01 16 19130845 19130845 A T ITPRIPL2 3'UTR 0.31 TCGA-A6-6653-01 16 20801985 20801985 C A ACSM3 Missense_Mutation p.P434Q 0.38 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 16 21123040 21123040 G A DNAH3 Missense_Mutation p.T669M 0.44 tolerated(0.15) benign(0.001) TCGA-A6-6653-01 16 21214481 21214481 T C ZP2 Missense_Mutation p.Y355C 0.37 tolerated(0.13) possibly_damaging(0.765) TCGA-A6-6653-01 16 2168065 2168065 C T PKD1 Missense_Mutation p.G310S 0.41 benign(0.248) TCGA-A6-6653-01 16 21968613 21968613 G A UQCRC2 Missense_Mutation p.A31T 0.25 tolerated(0.17) benign(0.05) TCGA-A6-6653-01 16 2236985 2236985 G A CASKIN1 Silent p.I308I 0.36 TCGA-A6-6653-01 16 23079392 23079392 G A USP31 Missense_Mutation p.A1345V 0.37 tolerated_low_confidence(0.07) benign(0.038) TCGA-A6-6653-01 16 23632778 23632779 - A PALB2 Frame_Shift_Ins p.L1006Ffs*5 0.27 TCGA-A6-6653-01 16 23768582 23768582 C T CHP2 Missense_Mutation p.R159C 0.46 deleterious(0) probably_damaging(0.979) TCGA-A6-6653-01 16 27483106 27483106 C T GTF3C1 Missense_Mutation p.V1497M 0.21 tolerated(0.1) probably_damaging(0.944) TCGA-A6-6653-01 16 27523175 27523175 G A GTF3C1 Missense_Mutation p.R341W 0.39 deleterious(0) probably_damaging(0.924) TCGA-A6-6653-01 16 2764147 2764147 C T PRSS27 Missense_Mutation p.V143M 0.25 deleterious(0) probably_damaging(0.957) TCGA-A6-6653-01 16 29845083 29845083 C A MVP Silent p.P117P 0.51 TCGA-A6-6653-01 16 3026975 3026975 C T PKMYT1 Missense_Mutation p.G23D 0.43 tolerated(0.58) benign(0.347) TCGA-A6-6653-01 16 30369514 30369514 C A TBC1D10B Missense_Mutation p.K726N 0.39 deleterious_low_confidence(0.04) benign(0.403) TCGA-A6-6653-01 16 30507537 30507537 G - ITGAL Frame_Shift_Del p.A543Pfs*27 0.54 TCGA-A6-6653-01 16 30724848 30724848 G A SRCAP Missense_Mutation p.R770H 0.40 unknown(0) TCGA-A6-6653-01 16 30733910 30733910 G - SRCAP Frame_Shift_Del p.Q1247Sfs*57 0.33 TCGA-A6-6653-01 16 31501829 31501829 C T SLC5A2 Silent p.A664A 0.46 TCGA-A6-6653-01 16 3334042 3334042 G A ZNF263 Missense_Mutation p.R75H 0.36 tolerated(0.95) benign(0.012) TCGA-A6-6653-01 16 3586166 3586166 C T CLUAP1 Silent p.D379D 0.38 TCGA-A6-6653-01 16 3614261 3614261 G A NLRC3 Missense_Mutation p.T273M 0.53 tolerated(0.21) benign(0.067) TCGA-A6-6653-01 16 3639737 3639737 C T SLX4 Missense_Mutation p.G1301E 0.25 tolerated(1) benign(0.007) TCGA-A6-6653-01 16 364605 364605 G A AXIN1 Silent p.N319N 0.44 TCGA-A6-6653-01 16 4043438 4043438 C T ADCY9 Missense_Mutation p.G653D 0.17 deleterious(0.02) probably_damaging(0.988) TCGA-A6-6653-01 16 4626620 4626620 G A C16orf96 Silent p.Q713Q 0.37 TCGA-A6-6653-01 16 47497820 47497820 G A PHKB Intron 0.43 TCGA-A6-6653-01 16 5128854 5128854 G A ALG1 Silent p.L279L 0.27 TCGA-A6-6653-01 16 57059998 57059998 C T NLRC5 Silent p.S381S 0.42 TCGA-A6-6653-01 16 57075484 57075484 C T NLRC5 Silent p.L1009L 0.50 TCGA-A6-6653-01 16 57159798 57159798 C T CPNE2 Silent p.N318N 0.39 TCGA-A6-6653-01 16 57416805 57416805 T C CX3CL1 Missense_Mutation p.L352P 0.08 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 16 57789767 57789767 C T KATNB1 Silent p.S527S 0.43 TCGA-A6-6653-01 16 58031627 58031627 C T ZNF319 Silent p.P181P 0.46 TCGA-A6-6653-01 16 61761007 61761007 T C CDH8 Silent p.K509K 0.31 TCGA-A6-6653-01 16 61935338 61935338 A G CDH8 Missense_Mutation p.Y98H 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6653-01 16 66514760 66514760 C A BEAN1 Missense_Mutation p.P238T 0.38 deleterious_low_confidence(0.02) benign(0.294) TCGA-A6-6653-01 16 66651104 66651105 - A CMTM4 3'UTR 0.36 TCGA-A6-6653-01 16 67229712 67229712 A G E2F4 Missense_Mutation p.K279R 0.48 tolerated(0.45) benign(0.11) TCGA-A6-6653-01 16 67237674 67237674 G A ELMO3 Missense_Mutation p.R739H 0.46 deleterious(0) probably_damaging(0.947) TCGA-A6-6653-01 16 67401114 67401114 A G LRRC36 Missense_Mutation p.S317G 0.47 tolerated_low_confidence(0.06) benign(0.007) TCGA-A6-6653-01 16 67686187 67686187 C A RLTPR Missense_Mutation p.P921H 0.40 deleterious(0.02) possibly_damaging(0.863) TCGA-A6-6653-01 16 67865980 67865980 C T CENPT Silent p.S107S 0.29 TCGA-A6-6653-01 16 68225664 68225664 T C NFATC3 Missense_Mutation p.I1031T 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-6653-01 16 68264755 68264755 G T ESRP2 Silent p.A629A 0.37 TCGA-A6-6653-01 16 68909187 68909187 C T TANGO6 Silent p.C375C 0.36 TCGA-A6-6653-01 16 69374110 69374110 A G NIP7 Missense_Mutation p.K53E 0.34 deleterious(0.03) benign(0.366) TCGA-A6-6653-01 16 69776203 69776203 G A NOB1 3'UTR 0.48 TCGA-A6-6653-01 16 70589098 70589098 G A SF3B3 Missense_Mutation p.E567K 0.43 deleterious(0) probably_damaging(0.993) TCGA-A6-6653-01 16 719590 719590 A C RHOT2 Missense_Mutation p.E87A 0.42 deleterious(0.04) benign(0.078) TCGA-A6-6653-01 16 72058238 72058238 G - DHODH 3'UTR 0.55 TCGA-A6-6653-01 16 72166814 72166814 T - PMFBP1 Frame_Shift_Del p.K427Rfs*17 0.38 TCGA-A6-6653-01 16 74425899 74425899 C T NPIPB15 Missense_Mutation p.A418V 0.15 deleterious_low_confidence(0) benign(0.337) TCGA-A6-6653-01 16 74446942 74446942 C - CLEC18B Frame_Shift_Del p.L224Sfs*11 0.17 TCGA-A6-6653-01 16 76495984 76495984 G A CNTNAP4 Missense_Mutation p.G416S 0.24 tolerated(0.7) benign(0.014) TCGA-A6-6653-01 16 77228892 77228892 C T MON1B Missense_Mutation p.A379V 0.45 tolerated(0.23) possibly_damaging(0.867) TCGA-A6-6653-01 16 78466520 78466520 T C WWOX Silent p.R309R 0.39 TCGA-A6-6653-01 16 81134589 81134589 T - GCSH 5'Flank 0.44 TCGA-A6-6653-01 16 83065794 83065794 G - CDH13 Frame_Shift_Del p.D163Tfs*31 0.43 TCGA-A6-6653-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.32 TCGA-A6-6653-01 16 85133776 85133776 G - FAM92B Frame_Shift_Del p.P241Lfs*18 0.42 TCGA-A6-6653-01 16 86565888 86565888 G - MTHFSD Frame_Shift_Del p.P294Lfs*26 0.22 TCGA-A6-6653-01 16 87868146 87868146 C T SLC7A5 Missense_Mutation p.A448T 0.48 tolerated(0.1) possibly_damaging(0.531) TCGA-A6-6653-01 16 88765398 88765398 C T RNF166 Missense_Mutation p.R174H 0.34 deleterious(0.05) probably_damaging(0.975) TCGA-A6-6653-01 16 88872444 88872444 C - CDT1 Frame_Shift_Del p.Q285Sfs*33 0.38 TCGA-A6-6653-01 16 89657603 89657603 G A CPNE7 Missense_Mutation p.V488M 0.15 tolerated(0.08) probably_damaging(0.937) TCGA-A6-6653-01 16 89783069 89783069 C T VPS9D1 Intron 0.44 TCGA-A6-6653-01 17 10302862 10302862 G A MYH8 Missense_Mutation p.A1287V 0.46 tolerated(0.05) benign(0.094) TCGA-A6-6653-01 17 14248945 14248945 C T HS3ST3B1 Silent p.H385H 0.48 TCGA-A6-6653-01 17 1538589 1538589 A G SCARF1 Silent p.S652S 0.29 TCGA-A6-6653-01 17 1637116 1637116 C T WDR81 Silent p.S1595S 0.68 TCGA-A6-6653-01 17 16833149 16833149 C T TBC1D27 RNA 0.17 TCGA-A6-6653-01 17 18061862 18061862 C T MYO15A Missense_Mutation p.A2998V 0.43 unknown(0) TCGA-A6-6653-01 17 1962605 1962605 G A HIC1 3'UTR 0.50 TCGA-A6-6653-01 17 20768711 20768711 T - CCDC144NL 3'UTR 0.29 TCGA-A6-6653-01 17 26817481 26817481 G A SLC13A2 Missense_Mutation p.E130K 0.22 deleterious(0) possibly_damaging(0.907) TCGA-A6-6653-01 17 27000441 27000441 G A SUPT6H Missense_Mutation p.E8K 0.47 deleterious_low_confidence(0.03) unknown(0) TCGA-A6-6653-01 17 27015219 27015219 G A SUPT6H Silent p.T1039T 0.29 TCGA-A6-6653-01 17 27401227 27401227 G A TIAF1 5'UTR 0.38 TCGA-A6-6653-01 17 27958625 27958626 GA - SSH2 Frame_Shift_Del p.S1169Qfs*4 0.35 TCGA-A6-6653-01 17 28381001 28381001 A C EFCAB5 Missense_Mutation p.S677R 0.08 tolerated(0.19) benign(0.032) TCGA-A6-6653-01 17 28601187 28601187 C T BLMH Missense_Mutation p.G225D 0.59 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 17 28811769 28811769 G A GOSR1 Missense_Mutation p.R110Q 0.43 deleterious(0) probably_damaging(0.966) TCGA-A6-6653-01 17 29645546 29645549 TTTG - EVI2A Frame_Shift_Del p.N184Kfs*11 0.51 TCGA-A6-6653-01 17 29758897 29758898 - G RAB11FIP4 Frame_Shift_Ins p.V78Gfs*46 0.48 TCGA-A6-6653-01 17 30533949 30533949 G A RHOT1 Silent p.S479S 0.43 TCGA-A6-6653-01 17 33464130 33464130 G A NLE1 Missense_Mutation p.R240C 0.42 tolerated(0.15) possibly_damaging(0.806) TCGA-A6-6653-01 17 33592319 33592319 C - SLFN5 Frame_Shift_Del p.P698Lfs*21 0.36 TCGA-A6-6653-01 17 37009243 37009243 A G RPL23 Intron 0.44 TCGA-A6-6653-01 17 37922621 37922621 C T IKZF3 Missense_Mutation p.E318K 0.11 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 17 38935871 38935871 C T KRT27 Silent p.S285S 0.56 TCGA-A6-6653-01 17 39092611 39092611 C T KRT23 Missense_Mutation p.R82H 0.43 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 17 39593726 39593726 A C KRT38 Missense_Mutation p.C437G 0.39 deleterious(0.04) benign(0) TCGA-A6-6653-01 17 39623201 39623201 C T KRT32 Missense_Mutation p.S126N 0.51 tolerated(0.36) benign(0.005) TCGA-A6-6653-01 17 40024073 40024073 A G ACLY Missense_Mutation p.M1099T 0.36 deleterious_low_confidence(0.04) benign(0.114) TCGA-A6-6653-01 17 40272800 40272800 G - KAT2A Frame_Shift_Del p.T130Lfs*14 0.19 TCGA-A6-6653-01 17 40362447 40362447 T - STAT5B Frame_Shift_Del p.K583Nfs*16 0.38 TCGA-A6-6653-01 17 40673163 40673163 A G ATP6V0A1 3'UTR 0.30 TCGA-A6-6653-01 17 40689478 40689478 G A NAGLU Missense_Mutation p.R149H 0.38 deleterious(0.02) possibly_damaging(0.545) TCGA-A6-6653-01 17 40933193 40933193 C T WNK4 Silent p.D159D 0.41 TCGA-A6-6653-01 17 40937468 40937468 C T WNK4 Missense_Mutation p.R482W 0.57 deleterious(0) unknown(0) TCGA-A6-6653-01 17 40939870 40939870 G - WNK4 Frame_Shift_Del p.V608Cfs*53 0.42 TCGA-A6-6653-01 17 41577333 41577333 G A DHX8 Missense_Mutation p.G470S 0.32 deleterious(0) probably_damaging(0.964) TCGA-A6-6653-01 17 42429835 42429835 G A GRN Missense_Mutation p.V514M 0.48 tolerated(0.09) benign(0.1) TCGA-A6-6653-01 17 42477129 42477129 A G GPATCH8 Silent p.G772G 0.39 TCGA-A6-6653-01 17 42478136 42478137 - T GPATCH8 Frame_Shift_Ins p.G437Rfs*7 0.36 TCGA-A6-6653-01 17 43480123 43480124 GA - ARHGAP27 Frame_Shift_Del p.S226Lfs*9 0.58 TCGA-A6-6653-01 17 45891123 45891123 C T OSBPL7 Missense_Mutation p.V477M 0.44 deleterious(0) probably_damaging(0.967) TCGA-A6-6653-01 17 46507475 46507475 G A SKAP1 Missense_Mutation p.A3V 0.47 deleterious(0.02) benign(0.036) TCGA-A6-6653-01 17 46685098 46685098 T - HOXB7 3'UTR 0.38 TCGA-A6-6653-01 17 47296962 47296962 G A ABI3 Missense_Mutation p.A175T 0.27 tolerated(0.07) benign(0.057) TCGA-A6-6653-01 17 47700209 47700209 G T SPOP 5'UTR 0.42 TCGA-A6-6653-01 17 4793046 4793046 G A MINK1 Silent p.A445A 0.30 TCGA-A6-6653-01 17 48193221 48193221 C T SAMD14 Missense_Mutation p.G212D 0.33 tolerated(0.17) probably_damaging(0.962) TCGA-A6-6653-01 17 4841055 4841055 C T SLC25A11 Missense_Mutation p.R309H 0.29 deleterious(0.03) benign(0.008) TCGA-A6-6653-01 17 48765038 48765038 C A ABCC3 Silent p.T1474T 0.40 TCGA-A6-6653-01 17 48918218 48918218 C T WFIKKN2 Silent p.S523S 0.35 TCGA-A6-6653-01 17 4998567 4998567 C A ZFP3 3'UTR 0.37 TCGA-A6-6653-01 17 56083309 56083309 C A SRSF1 Missense_Mutation p.Q135H 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 17 56389416 56389416 A C BZRAP1 Silent p.P922P 0.26 TCGA-A6-6653-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.48 TCGA-A6-6653-01 17 56438159 56438161 CTC - RNF43 In_Frame_Del p.E278del 0.53 TCGA-A6-6653-01 17 56620264 56620264 C A C17orf47 Missense_Mutation p.W428C 0.43 deleterious(0) probably_damaging(0.95) TCGA-A6-6653-01 17 57033106 57033106 G A PPM1E Silent p.T187T 0.44 TCGA-A6-6653-01 17 59067387 59067387 G A BCAS3 Missense_Mutation p.R426Q 0.38 deleterious(0) benign(0.067) TCGA-A6-6653-01 17 59560345 59560345 C - TBX4 Frame_Shift_Del p.P371Lfs*8 0.44 TCGA-A6-6653-01 17 60087991 60087992 - A MED13 Frame_Shift_Ins p.L629Ffs*8 0.35 TCGA-A6-6653-01 17 60813262 60813262 A - MARCH10 Intron 0.39 TCGA-A6-6653-01 17 61568729 61568729 G A ACE Missense_Mutation p.G967S 0.15 tolerated(0.16) benign(0.268) TCGA-A6-6653-01 17 64873504 64873504 C T CACNG5 Silent p.V18V 0.36 TCGA-A6-6653-01 17 6515398 6515398 C T KIAA0753 Silent p.A462A 0.09 TCGA-A6-6653-01 17 66423284 66423284 G A WIPI1 Missense_Mutation p.T395M 0.27 deleterious(0.03) benign(0.161) TCGA-A6-6653-01 17 66533557 66533557 G A FAM20A 3'UTR 0.50 TCGA-A6-6653-01 17 68128812 68128812 G T KCNJ16 Missense_Mutation p.G195V 0.42 deleterious(0) probably_damaging(0.963) TCGA-A6-6653-01 17 72353292 72353292 C T BTBD17 Missense_Mutation p.R314H 0.57 deleterious(0) probably_damaging(0.961) TCGA-A6-6653-01 17 7286821 7286821 G - TNK1 Frame_Shift_Del p.G106Afs*5 0.29 TCGA-A6-6653-01 17 72999873 72999873 G A CDR2L Missense_Mutation p.E368K 0.38 deleterious(0) probably_damaging(0.997) TCGA-A6-6653-01 17 73227671 73227671 C T NUP85 Silent p.F394F 0.36 TCGA-A6-6653-01 17 73279564 73279564 G T SLC25A19 Silent p.T133T 0.40 TCGA-A6-6653-01 17 7329688 7329688 C T C17orf74 Silent p.R126R 0.42 TCGA-A6-6653-01 17 73500752 73500752 G A CASKIN2 Silent p.G405G 0.39 TCGA-A6-6653-01 17 73566317 73566317 C T LLGL2 Missense_Mutation p.R619W 0.45 deleterious(0) possibly_damaging(0.762) TCGA-A6-6653-01 17 73759468 73759468 C T GALK1 Silent p.G136G 0.35 TCGA-A6-6653-01 17 74004026 74004026 G A EVPL Missense_Mutation p.R1754C 0.48 deleterious(0.05) benign(0.026) TCGA-A6-6653-01 17 74057598 74057598 C T SRP68 Missense_Mutation p.A207T 0.40 deleterious(0) probably_damaging(0.992) TCGA-A6-6653-01 17 74087315 74087315 C T EXOC7 Silent p.G270G 0.23 TCGA-A6-6653-01 17 74722511 74722511 G A JMJD6 Missense_Mutation p.A16V 0.53 deleterious(0.04) benign(0.012) TCGA-A6-6653-01 17 74740439 74740439 G A MFSD11 Missense_Mutation p.V178M 0.39 deleterious(0.05) probably_damaging(0.99) TCGA-A6-6653-01 17 76355017 76355017 C T SOCS3 Missense_Mutation p.G54S 0.41 tolerated(0.44) benign(0.016) TCGA-A6-6653-01 17 76993495 76993495 G - CANT1 Frame_Shift_Del p.T71Pfs*59 0.45 TCGA-A6-6653-01 17 77015396 77015396 C A C1QTNF1-AS1 3'UTR 0.29 TCGA-A6-6653-01 17 77090608 77090608 G A RBFOX3 Silent p.Y287Y 0.28 TCGA-A6-6653-01 17 7755487 7755487 C T KDM6B Missense_Mutation p.T1434M 0.43 possibly_damaging(0.488) TCGA-A6-6653-01 17 77709092 77709092 G A ENPP7 Missense_Mutation p.R217Q 0.31 tolerated(0.68) benign(0.007) TCGA-A6-6653-01 17 77808715 77808715 C T CBX4 Silent p.T242T 0.38 TCGA-A6-6653-01 17 7798703 7798703 G - CHD3 Frame_Shift_Del p.E578Sfs*4 0.34 TCGA-A6-6653-01 17 7798765 7798765 C - CHD3 Frame_Shift_Del p.R599Vfs*16 0.46 TCGA-A6-6653-01 17 78090814 78090814 G - GAA Frame_Shift_Del p.E748Rfs*16 0.40 TCGA-A6-6653-01 17 78117976 78117976 G A EIF4A3 Silent p.I79I 0.35 TCGA-A6-6653-01 17 78346491 78346491 C T RNF213 Silent p.L4236L 0.29 TCGA-A6-6653-01 17 79518009 79518009 C T C17orf70 Missense_Mutation p.G171S 0.10 tolerated(0.35) benign(0.071) TCGA-A6-6653-01 17 80039040 80039040 C T FASN Missense_Mutation p.E2199K 0.62 tolerated(0.21) benign(0.001) TCGA-A6-6653-01 17 80888397 80888397 G A TBCD Splice_Site p.X998_splice 0.37 TCGA-A6-6653-01 17 8136233 8136233 G A CTC1 Missense_Mutation p.R646W 0.34 deleterious(0.04) benign(0.024) TCGA-A6-6653-01 17 8140695 8140695 G A CTC1 Nonsense_Mutation p.Q264* 0.37 TCGA-A6-6653-01 18 14478662 14478662 T - CXADRP3 RNA 0.55 TCGA-A6-6653-01 18 14797846 14797846 C T ANKRD30B Silent p.L674L 0.36 TCGA-A6-6653-01 18 21819195 21819195 T G OSBPL1A Missense_Mutation p.D478A 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-A6-6653-01 18 22804564 22804564 G T ZNF521 Silent p.G1106G 0.29 TCGA-A6-6653-01 18 29126220 29126220 G A DSG2 Silent p.Q957Q 0.43 TCGA-A6-6653-01 18 30554513 30554513 G A CCDC178 Nonsense_Mutation p.Q841* 0.29 TCGA-A6-6653-01 18 33077757 33077757 A G INO80C Missense_Mutation p.S28P 0.37 deleterious_low_confidence(0) benign(0.276) TCGA-A6-6653-01 18 34802291 34802291 G A KIAA1328 3'UTR 0.50 TCGA-A6-6653-01 18 42532823 42532823 T - SETBP1 Frame_Shift_Del p.F1174Lfs*13 0.35 TCGA-A6-6653-01 18 44057369 44057369 C T LOXHD1 Intron 0.56 TCGA-A6-6653-01 18 44140250 44140250 C - LOXHD1 5'Flank 0.33 TCGA-A6-6653-01 18 47367798 47367798 C T MYO5B Silent p.T1546T 0.59 TCGA-A6-6653-01 18 50592501 50592501 C T DCC Missense_Mutation p.A409V 0.28 tolerated(0.44) benign(0.005) TCGA-A6-6653-01 18 50731594 50731594 C A DCC Missense_Mutation p.P528T 0.40 deleterious(0) probably_damaging(0.997) TCGA-A6-6653-01 18 5398119 5398120 - T EPB41L3 Frame_Shift_Ins p.L792Afs*6 0.41 TCGA-A6-6653-01 18 56651323 56651323 C T ZNF532 Silent p.A1177A 0.20 TCGA-A6-6653-01 18 60242326 60242326 G A ZCCHC2 Silent p.P1004P 0.31 TCGA-A6-6653-01 18 60646023 60646023 G A PHLPP1 Missense_Mutation p.E1505K 0.56 tolerated(0.54) benign(0.114) TCGA-A6-6653-01 18 61226858 61226858 G A SERPINB12 Silent p.G97G 0.31 TCGA-A6-6653-01 18 64178871 64178871 G C CDH19 Missense_Mutation p.H504D 0.31 deleterious(0.03) possibly_damaging(0.696) TCGA-A6-6653-01 18 65182481 65182481 A T DSEL 5'UTR 0.46 TCGA-A6-6653-01 18 66365209 66365209 C T TMX3 Missense_Mutation p.R151H 0.33 tolerated(0.12) benign(0.008) TCGA-A6-6653-01 18 67993208 67993208 A G SOCS6 Missense_Mutation p.H435R 0.31 deleterious(0) probably_damaging(0.997) TCGA-A6-6653-01 18 6942195 6942195 G A LAMA1 Silent p.R3037R 0.45 TCGA-A6-6653-01 18 73139533 73139533 G A SMIM21 5'UTR 0.53 TCGA-A6-6653-01 18 74091248 74091248 G A ZNF516 Missense_Mutation p.A941V 0.41 tolerated(0.23) benign(0.023) TCGA-A6-6653-01 18 74154167 74154167 C T ZNF516 Missense_Mutation p.G282S 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 19 1003194 1003194 G A GRIN3B Silent p.A164A 0.17 TCGA-A6-6653-01 19 10226441 10226441 G A EIF3G Silent p.T253T 0.51 TCGA-A6-6653-01 19 10543201 10543201 T A PDE4A Intron 0.28 TCGA-A6-6653-01 19 10893717 10893717 A C DNM2 Missense_Mutation p.K257T 0.26 tolerated(0.07) possibly_damaging(0.649) TCGA-A6-6653-01 19 11145689 11145689 G A SMARCA4 Missense_Mutation p.D1351N 0.36 probably_damaging(0.932) TCGA-A6-6653-01 19 12461741 12461741 A - ZNF442 Frame_Shift_Del p.W220Gfs*34 0.34 TCGA-A6-6653-01 19 12576173 12576173 C A ZNF709 Missense_Mutation p.R188I 0.41 tolerated(0.15) probably_damaging(0.998) TCGA-A6-6653-01 19 12958426 12958426 C T MAST1 Silent p.S163S 0.18 TCGA-A6-6653-01 19 12979494 12979494 G A MAST1 Silent p.S868S 0.32 TCGA-A6-6653-01 19 12981677 12981678 TG - MAST1 Frame_Shift_Del p.A1016Wfs*19 0.47 TCGA-A6-6653-01 19 13065105 13065106 TC - GADD45GIP1 Frame_Shift_Del p.K196Tfs*43 0.48 TCGA-A6-6653-01 19 14029759 14029759 G A CC2D1A Silent p.A351A 0.14 TCGA-A6-6653-01 19 14281620 14281620 G T LPHN1 Intron 0.43 TCGA-A6-6653-01 19 14846823 14846823 G A EMR2 3'UTR 0.37 TCGA-A6-6653-01 19 16296328 16296328 G A FAM32A Splice_Site p.X25_splice 0.41 TCGA-A6-6653-01 19 16296542 16296542 C T FAM32A Missense_Mutation p.A61V 0.29 deleterious(0.01) benign(0.2) TCGA-A6-6653-01 19 17032726 17032726 C T CPAMD8 Silent p.S1253S 0.50 TCGA-A6-6653-01 19 17039884 17039884 C - CPAMD8 Frame_Shift_Del p.H1052Ifs*127 0.46 TCGA-A6-6653-01 19 17449191 17449191 G A GTPBP3 Missense_Mutation p.G107S 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 19 18305818 18305819 - C MPV17L2 Frame_Shift_Ins p.Q165Pfs*175 0.31 TCGA-A6-6653-01 19 18321823 18321823 G T PDE4C Silent p.A685A 0.29 TCGA-A6-6653-01 19 18322738 18322738 A G PDE4C Missense_Mutation p.L541P 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-A6-6653-01 19 18545071 18545071 C T SSBP4 3'UTR 0.42 TCGA-A6-6653-01 19 18879553 18879554 - C CRTC1 Frame_Shift_Ins p.E443Rfs*24 0.39 TCGA-A6-6653-01 19 19162532 19162532 C T ARMC6 Silent p.C127C 0.41 TCGA-A6-6653-01 19 19309477 19309477 G A RFXANK Silent p.T192T 0.40 TCGA-A6-6653-01 19 19381112 19381112 C T TM6SF2 Intron 0.37 TCGA-A6-6653-01 19 21300759 21300759 G A ZNF714 Missense_Mutation p.G430D 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-A6-6653-01 19 2151262 2151262 G A AP3D1 Silent p.G24G 0.28 TCGA-A6-6653-01 19 2247656 2247656 A G SF3A2 Missense_Mutation p.K204E 0.42 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-A6-6653-01 19 2290982 2290982 G A LINGO3 Missense_Mutation p.A265V 0.44 deleterious(0) possibly_damaging(0.761) TCGA-A6-6653-01 19 23406702 23406702 T - ZNF724P Frame_Shift_Del p.G116Afs*22 0.23 TCGA-A6-6653-01 19 2413794 2413794 C T TMPRSS9 Missense_Mutation p.R417C 0.34 deleterious(0) probably_damaging(0.932) TCGA-A6-6653-01 19 2427545 2427545 C T TIMM13 5'UTR 0.29 TCGA-A6-6653-01 19 2805164 2805164 G A THOP1 Missense_Mutation p.R247Q 0.43 deleterious(0.03) probably_damaging(1) TCGA-A6-6653-01 19 2867410 2867410 C T ZNF556 5'UTR 0.38 TCGA-A6-6653-01 19 3009686 3009686 G - TLE2 Frame_Shift_Del p.L343* 0.48 TCGA-A6-6653-01 19 3011031 3011031 G A TLE2 Missense_Mutation p.T334M 0.51 tolerated(0.34) possibly_damaging(0.891) TCGA-A6-6653-01 19 33464467 33464467 A G C19orf40 Missense_Mutation p.N81S 0.46 tolerated(0.05) probably_damaging(0.991) TCGA-A6-6653-01 19 33666371 33666371 G A WDR88 Missense_Mutation p.V438M 0.12 deleterious(0.04) possibly_damaging(0.496) TCGA-A6-6653-01 19 34303788 34303788 C T KCTD15 Missense_Mutation p.R263W 0.41 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 19 35175413 35175413 A - ZNF302 Frame_Shift_Del p.K159Sfs*4 0.31 TCGA-A6-6653-01 19 3574502 3574502 C T HMG20B Missense_Mutation p.T90M 0.71 tolerated(0.1) benign(0.118) TCGA-A6-6653-01 19 35991319 35991319 C T DMKN Intron 0.11 TCGA-A6-6653-01 19 36159582 36159582 G A UPK1A Intron 0.44 TCGA-A6-6653-01 19 36221496 36221496 G A KMT2B Missense_Mutation p.R1752Q 0.37 probably_damaging(0.968) TCGA-A6-6653-01 19 36233448 36233448 G A U2AF1L4 3'UTR 0.42 TCGA-A6-6653-01 19 3653509 3653509 G A PIP5K1C Missense_Mutation p.R234C 0.48 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 19 37045572 37045572 C A ZNF529 Missense_Mutation p.D79Y 0.47 deleterious(0) possibly_damaging(0.873) TCGA-A6-6653-01 19 3734314 3734315 - C TJP3 Intron 0.47 TCGA-A6-6653-01 19 37854537 37854537 C T HKR1 Nonsense_Mutation p.Q614* 0.40 TCGA-A6-6653-01 19 38942433 38942433 C T RYR1 Silent p.D384D 0.35 TCGA-A6-6653-01 19 38990454 38990454 C T RYR1 Missense_Mutation p.R2403C 0.62 benign(0.136) TCGA-A6-6653-01 19 39515996 39515996 G A FBXO27 3'UTR 0.33 TCGA-A6-6653-01 19 39913545 39913545 G A PLEKHG2 Silent p.G617G 0.35 TCGA-A6-6653-01 19 39973540 39973540 A G TIMM50 Missense_Mutation p.D195G 0.17 deleterious(0.01) benign(0.39) TCGA-A6-6653-01 19 39998563 39998563 G A DLL3 Silent p.T589T 0.37 TCGA-A6-6653-01 19 40374085 40374085 G A FCGBP Missense_Mutation p.P3998L 0.34 probably_damaging(0.913) TCGA-A6-6653-01 19 40411736 40411736 C T FCGBP Missense_Mutation p.V1298M 0.43 probably_damaging(0.993) TCGA-A6-6653-01 19 40929340 40929340 C T SERTAD1 Silent p.P38P 0.56 TCGA-A6-6653-01 19 4099263 4099263 G A MAP2K2 Silent p.D285D 0.38 TCGA-A6-6653-01 19 41220464 41220464 C A ADCK4 Missense_Mutation p.G25V 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-A6-6653-01 19 41307054 41307054 G A EGLN2 Missense_Mutation p.V193I 0.56 tolerated(0.09) probably_damaging(0.948) TCGA-A6-6653-01 19 41928241 41928241 G A BCKDHA Silent p.T273T 0.29 TCGA-A6-6653-01 19 4210332 4210332 G A ANKRD24 Missense_Mutation p.R341Q 0.07 deleterious(0.02) possibly_damaging(0.602) TCGA-A6-6653-01 19 42462524 42462524 G - RABAC1 Frame_Shift_Del p.P94Lfs*33 0.43 TCGA-A6-6653-01 19 42510912 42510912 G A GRIK5 Missense_Mutation p.A641V 0.16 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 19 4323155 4323155 G A FSD1 Silent p.T404T 0.46 TCGA-A6-6653-01 19 43585246 43585246 T C PSG2 Missense_Mutation p.R73G 0.41 tolerated(0.09) benign(0.085) TCGA-A6-6653-01 19 43969648 43969648 C T LYPD3 Missense_Mutation p.G26R 0.58 tolerated(0.52) benign(0.002) TCGA-A6-6653-01 19 43983677 43983677 C A PHLDB3 Missense_Mutation p.W518C 0.38 tolerated(0.08) benign(0.06) TCGA-A6-6653-01 19 44097409 44097409 C T IRGQ Missense_Mutation p.R214H 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 19 44679611 44679611 A - ZNF226 Intron 0.30 TCGA-A6-6653-01 19 44934463 44934463 G A ZNF229 Missense_Mutation p.L165F 0.37 tolerated(0.7) benign(0.143) TCGA-A6-6653-01 19 45024628 45024628 C T CEACAM20 RNA 0.38 TCGA-A6-6653-01 19 45493718 45493718 G A CLPTM1 Missense_Mutation p.V400I 0.13 tolerated(0.2) possibly_damaging(0.526) TCGA-A6-6653-01 19 45537749 45537749 G A RELB Silent p.P439P 0.50 TCGA-A6-6653-01 19 45656834 45656834 C A NKPD1 Silent p.A287A 0.45 TCGA-A6-6653-01 19 45731019 45731019 C T EXOC3L2 Missense_Mutation p.R102H 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-A6-6653-01 19 4652355 4652355 G A TNFAIP8L1 Silent p.A158A 0.47 TCGA-A6-6653-01 19 46915812 46915812 C A CCDC8 Missense_Mutation p.V86L 0.10 benign(0.437) TCGA-A6-6653-01 19 47226109 47226109 C T STRN4 Missense_Mutation p.V629I 0.42 deleterious(0) benign(0.014) TCGA-A6-6653-01 19 47883082 47883082 C T DHX34 Missense_Mutation p.A941V 0.17 tolerated(0.49) benign(0.102) TCGA-A6-6653-01 19 48945504 48945504 G A GRIN2D Silent p.A846A 0.43 TCGA-A6-6653-01 19 49107102 49107102 G A FAM83E Silent p.D275D 0.34 TCGA-A6-6653-01 19 49132859 49132859 G A SPHK2 Silent p.P598P 0.68 TCGA-A6-6653-01 19 49631648 49631648 C T PPFIA3 Silent p.L89L 0.46 TCGA-A6-6653-01 19 49632157 49632157 G A PPFIA3 Missense_Mutation p.R132H 0.61 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 19 49692315 49692315 C T TRPM4 Silent p.D662D 0.56 TCGA-A6-6653-01 19 49838987 49838989 TCT - CD37 In_Frame_Del p.F30del 0.59 TCGA-A6-6653-01 19 49934001 49934001 G A SLC17A7 Silent p.Y486Y 0.51 TCGA-A6-6653-01 19 50017380 50017380 G - FCGRT Frame_Shift_Del p.G107Efs*29 0.39 TCGA-A6-6653-01 19 50100926 50100926 G A PRR12 Missense_Mutation p.A1112T 0.48 probably_damaging(0.992) TCGA-A6-6653-01 19 50214044 50214044 C T CPT1C Missense_Mutation p.T599M 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 19 50412961 50412961 G A NUP62 Missense_Mutation p.S35F 0.34 deleterious(0.01) unknown(0) TCGA-A6-6653-01 19 51014860 51014860 G - ASPDH 3'Flank 0.32 TCGA-A6-6653-01 19 51200877 51200877 C T SHANK1 Missense_Mutation p.V636M 0.27 benign(0.369) TCGA-A6-6653-01 19 51274915 51274915 C - GPR32 Frame_Shift_Del p.R355Gfs*16 0.31 TCGA-A6-6653-01 19 5131903 5131903 G A KDM4B Silent p.P597P 0.10 TCGA-A6-6653-01 19 51506976 51506976 C - KLK9 Frame_Shift_Del p.G196Afs*75 0.51 TCGA-A6-6653-01 19 5231327 5231327 C T PTPRS Missense_Mutation p.E717K 0.55 deleterious(0.04) benign(0.397) TCGA-A6-6653-01 19 52715982 52715982 C T PPP2R1A Missense_Mutation p.R183W 0.48 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 19 52888438 52888438 A - ZNF880 Frame_Shift_Del p.K537Nfs*60 0.41 TCGA-A6-6653-01 19 53886432 53886432 C T ZNF525 3'UTR 0.36 TCGA-A6-6653-01 19 54659149 54659149 C T LENG1 3'UTR 0.41 TCGA-A6-6653-01 19 54711226 54711226 G A RPS9 Intron 0.35 TCGA-A6-6653-01 19 55048309 55048309 C A KIR3DX1 Silent p.T292T 0.39 TCGA-A6-6653-01 19 55539039 55539039 C T GP6 Missense_Mutation p.A173T 0.28 tolerated_low_confidence(0.06) benign(0.046) TCGA-A6-6653-01 19 55593510 55593510 G A EPS8L1 Missense_Mutation p.D318N 0.33 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 19 55874319 55874319 C T FAM71E2 Missense_Mutation p.R39H 0.44 deleterious(0.04) possibly_damaging(0.491) TCGA-A6-6653-01 19 56244624 56244624 G A NLRP9 Silent p.N191N 0.38 TCGA-A6-6653-01 19 56320376 56320376 G A NLRP11 Missense_Mutation p.R534C 0.10 deleterious(0.04) benign(0.118) TCGA-A6-6653-01 19 56701328 56701328 C T ZSCAN5B Silent p.G452G 0.38 TCGA-A6-6653-01 19 5694844 5694844 G A LONP1 Silent p.D694D 0.33 TCGA-A6-6653-01 19 57135387 57135387 G A ZNF71 3'UTR 0.40 TCGA-A6-6653-01 19 57869111 57869111 G A ZNF304 Missense_Mutation p.S625N 0.42 deleterious(0.01) possibly_damaging(0.722) TCGA-A6-6653-01 19 58011407 58011407 C T ZNF773 5'UTR 0.77 TCGA-A6-6653-01 19 58439329 58439329 C - ZNF418 Frame_Shift_Del p.A74Qfs*74 0.42 TCGA-A6-6653-01 19 58724396 58724396 C T ZNF274 Missense_Mutation p.R616C 0.43 deleterious(0) probably_damaging(0.994) TCGA-A6-6653-01 19 59022748 59022748 A C SLC27A5 Missense_Mutation p.L192R 0.33 deleterious(0) probably_damaging(0.996) TCGA-A6-6653-01 19 59060404 59060404 C T TRIM28 Nonsense_Mutation p.R487* 0.37 TCGA-A6-6653-01 19 6040007 6040007 C T RFX2 Missense_Mutation p.R169H 0.49 deleterious(0) probably_damaging(0.957) TCGA-A6-6653-01 19 6217997 6218008 GAGTCTGAGCTG - MLLT1 In_Frame_Del p.S386_S389del 0.25 TCGA-A6-6653-01 19 6475391 6475391 C T DENND1C Missense_Mutation p.R316Q 0.29 tolerated(0.15) benign(0.059) TCGA-A6-6653-01 19 6476920 6476920 G A DENND1C Missense_Mutation p.A209V 0.31 deleterious(0) probably_damaging(0.993) TCGA-A6-6653-01 19 7075090 7075090 C T ZNF557 Missense_Mutation p.A2V 0.46 deleterious(0.01) possibly_damaging(0.873) TCGA-A6-6653-01 19 7592444 7592444 C - MCOLN1 Frame_Shift_Del p.S206Afs*32 0.48 TCGA-A6-6653-01 19 7806133 7806133 G A CD209 3'UTR 0.30 TCGA-A6-6653-01 19 8203422 8203422 C A FBN3 Missense_Mutation p.V298L 0.22 tolerated(0.05) benign(0.003) TCGA-A6-6653-01 19 8563168 8563168 G A PRAM1 Missense_Mutation p.R480W 0.59 tolerated(0.06) benign(0.071) TCGA-A6-6653-01 19 8564132 8564132 G T PRAM1 Missense_Mutation p.A187E 0.37 tolerated(0.34) possibly_damaging(0.735) TCGA-A6-6653-01 19 9204712 9204712 G A OR1M1 Silent p.S264S 0.12 TCGA-A6-6653-01 1 100378027 100378028 - A AGL Frame_Shift_Ins p.N1304Kfs*7 0.32 TCGA-A6-6653-01 1 100681598 100681598 G T DBT Missense_Mutation p.P238H 0.40 deleterious(0.01) possibly_damaging(0.707) TCGA-A6-6653-01 1 102462536 102462536 C T OLFM3 5'UTR 0.52 TCGA-A6-6653-01 1 104234225 104234225 C T AMY1B Missense_Mutation p.G296R 0.21 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 1 109870188 109870188 G A SORT1 Silent p.S469S 0.34 TCGA-A6-6653-01 1 110032750 110032750 G A ATXN7L2 Silent p.A412A 0.37 TCGA-A6-6653-01 1 110051092 110051092 G A AMIGO1 Missense_Mutation p.A148V 0.33 tolerated(0.18) benign(0.001) TCGA-A6-6653-01 1 110171370 110171370 G A AMPD2 Missense_Mutation p.V559I 0.59 tolerated(0.6) benign(0.062) TCGA-A6-6653-01 1 110210691 110210691 C T GSTM2 5'UTR 0.47 TCGA-A6-6653-01 1 111061266 111061266 G A KCNA10 Silent p.N48N 0.37 TCGA-A6-6653-01 1 1114928 1114928 G A TTLL10 Intron 0.33 TCGA-A6-6653-01 1 111826755 111826755 T C CHIAP2 RNA 0.56 TCGA-A6-6653-01 1 115420822 115420825 AAGT - SYCP1 Splice_Site p.X304_splice 0.37 TCGA-A6-6653-01 1 115537573 115537573 G A SYCP1 Missense_Mutation p.R955H 0.36 tolerated(0.12) benign(0.026) TCGA-A6-6653-01 1 11898489 11898489 G A CLCN6 Missense_Mutation p.R798H 0.33 deleterious(0.02) probably_damaging(0.931) TCGA-A6-6653-01 1 12089127 12089127 T C MIIP Silent p.P195P 0.25 TCGA-A6-6653-01 1 1288793 1288794 - G MXRA8 3'UTR 0.21 TCGA-A6-6653-01 1 1389849 1389849 C T ATAD3C Missense_Mutation p.T116M 0.17 deleterious(0) probably_damaging(0.915) TCGA-A6-6653-01 1 142634896 142634896 C T RP11-417J8.6 RNA 0.23 TCGA-A6-6653-01 1 144877085 144877085 G A PDE4DIP Silent p.L1534L 0.20 TCGA-A6-6653-01 1 145527942 145527942 C - ITGA10 Frame_Shift_Del p.W62Gfs*17 0.42 TCGA-A6-6653-01 1 145533165 145533165 C - ITGA10 Frame_Shift_Del p.P422Lfs*50 0.47 TCGA-A6-6653-01 1 147230606 147230606 C T GJA5 Silent p.K247K 0.48 TCGA-A6-6653-01 1 149783628 149783628 T C HIST2H2BF Missense_Mutation p.Y84C 0.28 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-A6-6653-01 1 150482705 150482705 C - ECM1 Intron 0.44 TCGA-A6-6653-01 1 151681549 151681549 G A CELF3 Silent p.C137C 0.44 TCGA-A6-6653-01 1 152280785 152280785 T - FLG Frame_Shift_Del p.T2193Hfs*226 0.29 TCGA-A6-6653-01 1 152282228 152282228 G A FLG Nonsense_Mutation p.R1712* 0.43 TCGA-A6-6653-01 1 152282330 152282330 C T FLG Missense_Mutation p.G1678R 0.23 probably_damaging(0.988) TCGA-A6-6653-01 1 152488411 152488411 C T CRCT1 3'UTR 0.38 TCGA-A6-6653-01 1 153588315 153588315 G A S100A14 Missense_Mutation p.A7V 0.47 deleterious(0.03) possibly_damaging(0.681) TCGA-A6-6653-01 1 154108315 154108315 C T NUP210L Silent p.Q328Q 0.35 TCGA-A6-6653-01 1 154543995 154543996 - A CHRNB2 Frame_Shift_Ins p.P234Afs*136 0.37 TCGA-A6-6653-01 1 154574763 154574763 G A ADAR Missense_Mutation p.P119S 0.39 tolerated(0.19) benign(0.074) TCGA-A6-6653-01 1 155263247 155263247 C T PKLR Silent p.A417A 0.34 TCGA-A6-6653-01 1 155290983 155290983 C T RUSC1 Intron 0.45 TCGA-A6-6653-01 1 155309120 155309120 G A ASH1L Nonsense_Mutation p.R2834* 0.43 TCGA-A6-6653-01 1 155450527 155450527 T - ASH1L Frame_Shift_Del p.R712Efs*23 0.37 TCGA-A6-6653-01 1 155838165 155838165 T C SYT11 Silent p.S148S 0.37 TCGA-A6-6653-01 1 156214956 156214956 C T PAQR6 Missense_Mutation p.D90N 0.44 deleterious_low_confidence(0.05) probably_damaging(0.994) TCGA-A6-6653-01 1 1565079 1565079 G A MIB2 Missense_Mutation p.R990H 0.20 deleterious(0.02) benign(0.029) TCGA-A6-6653-01 1 156616846 156616846 G A BCAN Silent p.A115A 0.54 TCGA-A6-6653-01 1 156873763 156873763 G A PEAR1 Silent p.L15L 0.40 TCGA-A6-6653-01 1 158326388 158326388 T C CD1E Intron 0.40 TCGA-A6-6653-01 1 158909386 158909386 T - PYHIN1 Intron 0.34 TCGA-A6-6653-01 1 159176004 159176004 G A DARC Missense_Mutation p.V261I 0.49 tolerated(0.82) benign(0.023) TCGA-A6-6653-01 1 159770368 159770368 C T FCRL6 5'Flank 0.41 TCGA-A6-6653-01 1 1599808 1599808 G A SLC35E2B Missense_Mutation p.T313M 0.28 deleterious(0.02) probably_damaging(0.944) TCGA-A6-6653-01 1 160151795 160151795 C T ATP1A4 Silent p.D981D 0.39 TCGA-A6-6653-01 1 160389354 160389354 G A VANGL2 Missense_Mutation p.R252H 0.60 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 1 16068973 16068973 C A TMEM82 5'UTR 0.18 TCGA-A6-6653-01 1 16069048 16069048 G T TMEM82 5'UTR 0.51 TCGA-A6-6653-01 1 161068705 161068706 - C KLHDC9 Frame_Shift_Ins p.A130Rfs*5 0.31 TCGA-A6-6653-01 1 161143695 161143695 G - B4GALT3 Frame_Shift_Del p.R212Gfs*10 0.46 TCGA-A6-6653-01 1 161203008 161203008 G A NR1I3 Missense_Mutation p.A120V 0.39 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 1 161599778 161599778 C T FCGR3B Missense_Mutation p.V73M 0.80 deleterious(0.02) probably_damaging(0.916) TCGA-A6-6653-01 1 16346016 16346016 A G HSPB7 5'Flank 0.58 TCGA-A6-6653-01 1 16458757 16458757 G A EPHA2 Silent p.G709G 0.31 TCGA-A6-6653-01 1 1666171 1666171 G A SLC35E2 Silent p.H230H 0.43 TCGA-A6-6653-01 1 167400679 167400679 G A CD247 3'UTR 0.50 TCGA-A6-6653-01 1 16953754 16953754 C T CROCCP2 3'Flank 0.19 TCGA-A6-6653-01 1 169770113 169770113 G A C1orf112 Splice_Site p.X22_splice 0.41 TCGA-A6-6653-01 1 172017855 172017855 G T DNM3 Nonsense_Mutation p.E434* 0.44 TCGA-A6-6653-01 1 172411334 172411334 A C PIGC Silent p.S143S 0.20 TCGA-A6-6653-01 1 173570928 173570928 T - SLC9C2 5'UTR 0.35 TCGA-A6-6653-01 1 17596851 17596851 C T PADI3 Missense_Mutation p.A259V 0.40 tolerated(0.2) benign(0.021) TCGA-A6-6653-01 1 179100516 179100516 A G ABL2 Silent p.S107S 0.13 TCGA-A6-6653-01 1 17928658 17928658 C T ARHGEF10L Silent p.D98D 0.35 TCGA-A6-6653-01 1 179319496 179319496 C T SOAT1 Silent p.H460H 0.39 TCGA-A6-6653-01 1 183212603 183212603 T C LAMC2 3'UTR 0.28 TCGA-A6-6653-01 1 183938468 183938468 G A COLGALT2 Missense_Mutation p.P256L 0.53 deleterious(0.04) benign(0.313) TCGA-A6-6653-01 1 184868364 184868364 C T FAM129A Missense_Mutation p.R45H 0.33 tolerated(0.16) benign(0.309) TCGA-A6-6653-01 1 18809780 18809780 A G KLHDC7A Missense_Mutation p.T769A 0.34 tolerated(0.73) unknown(0) TCGA-A6-6653-01 1 190068147 190068147 G A BRINP3 Silent p.V434V 0.11 TCGA-A6-6653-01 1 19505657 19505657 A G UBR4 Missense_Mutation p.Y748H 0.47 possibly_damaging(0.781) TCGA-A6-6653-01 1 197032126 197032126 A - F13B Frame_Shift_Del p.F42Lfs*8 0.28 TCGA-A6-6653-01 1 197396592 197396592 G A CRB1 Missense_Mutation p.A713T 0.35 tolerated(0.51) benign(0.043) TCGA-A6-6653-01 1 200972714 200972714 C T KIF21B Silent p.A404A 0.27 TCGA-A6-6653-01 1 201009769 201009769 G T CACNA1S Missense_Mutation p.A1736E 0.46 tolerated_low_confidence(0.28) benign(0.001) TCGA-A6-6653-01 1 203014637 203014637 C A PPFIA4 Missense_Mutation p.L270I 0.34 deleterious(0.01) probably_damaging(0.915) TCGA-A6-6653-01 1 203316428 203316428 C A FMOD Missense_Mutation p.R324M 0.32 deleterious(0.01) probably_damaging(0.935) TCGA-A6-6653-01 1 204226896 204226896 C T PLEKHA6 Missense_Mutation p.R370Q 0.39 tolerated(0.11) probably_damaging(0.999) TCGA-A6-6653-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.43 TCGA-A6-6653-01 1 205238531 205238531 G A TMCC2 Missense_Mutation p.G401S 0.47 deleterious(0.03) probably_damaging(0.99) TCGA-A6-6653-01 1 207078344 207078344 G - FAIM3 3'UTR 0.35 TCGA-A6-6653-01 1 207139170 207139170 T G FCAMR Missense_Mutation p.H68P 0.25 deleterious(0) possibly_damaging(0.878) TCGA-A6-6653-01 1 208383664 208383664 G A PLXNA2 Silent p.S444S 0.30 TCGA-A6-6653-01 1 212530404 212530405 - T PPP2R5A Frame_Shift_Ins p.Q366Sfs*12 0.34 TCGA-A6-6653-01 1 213125142 213125142 C T VASH2 Silent p.N86N 0.60 TCGA-A6-6653-01 1 213145977 213145977 T C VASH2 Missense_Mutation p.Y141H 0.39 tolerated(0.56) benign(0.002) TCGA-A6-6653-01 1 214170717 214170717 G A PROX1 Missense_Mutation p.R280H 0.39 tolerated(0.34) benign(0.012) TCGA-A6-6653-01 1 215752426 215752426 G A KCTD3 Missense_Mutation p.G161R 0.33 tolerated(0.53) benign(0.157) TCGA-A6-6653-01 1 216595685 216595685 A - USH2A 5'UTR 0.33 TCGA-A6-6653-01 1 220826610 220826610 C - MARK1 Frame_Shift_Del p.H636Mfs*17 0.12 TCGA-A6-6653-01 1 22156013 22156013 C T HSPG2 Missense_Mutation p.R3952H 0.51 benign(0.032) TCGA-A6-6653-01 1 222803374 222803374 C T MIA3 Missense_Mutation p.R938W 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 1 226065284 226065284 G A TMEM63A 5'UTR 0.39 TCGA-A6-6653-01 1 226924291 226924291 G T ITPKB Missense_Mutation p.A290D 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.726) TCGA-A6-6653-01 1 228469707 228469707 C T OBSCN Silent p.C3186C 0.43 TCGA-A6-6653-01 1 228494100 228494100 T A OBSCN Missense_Mutation p.L4853Q 0.41 probably_damaging(0.999) TCGA-A6-6653-01 1 228511099 228511099 G T OBSCN Silent p.V6105V 0.42 TCGA-A6-6653-01 1 228563835 228563835 G A OBSCN Missense_Mutation p.S8595N 0.44 probably_damaging(0.961) TCGA-A6-6653-01 1 228582266 228582266 C T TRIM11 3'UTR 0.45 TCGA-A6-6653-01 1 22965858 22965858 C T C1QA Silent p.A232A 0.37 TCGA-A6-6653-01 1 230459302 230459302 C T PGBD5 Missense_Mutation p.A413T 0.40 tolerated(0.08) probably_damaging(0.999) TCGA-A6-6653-01 1 230498112 230498112 G A PGBD5 Intron 0.33 TCGA-A6-6653-01 1 231487256 231487256 A - SPRTN Frame_Shift_Del p.G222Afs*7 0.16 TCGA-A6-6653-01 1 2321421 2321421 C T MORN1 Missense_Mutation p.V31I 0.36 tolerated(0.19) benign(0.079) TCGA-A6-6653-01 1 233750206 233750206 T C KCNK1 Missense_Mutation p.S97P 0.45 deleterious(0) probably_damaging(0.949) TCGA-A6-6653-01 1 235715489 235715489 G T GNG4 Silent p.R50R 0.11 TCGA-A6-6653-01 1 237656274 237656274 A G RYR2 Silent p.S616S 0.22 TCGA-A6-6653-01 1 237711850 237711850 G A RYR2 Missense_Mutation p.R1009Q 0.36 probably_damaging(0.981) TCGA-A6-6653-01 1 240370269 240370269 C T FMN2 Silent p.G719G 0.42 TCGA-A6-6653-01 1 240371158 240371158 G A FMN2 Missense_Mutation p.G1016R 0.26 unknown(0) TCGA-A6-6653-01 1 240371183 240371183 C A FMN2 Missense_Mutation p.P1024H 0.40 unknown(0) TCGA-A6-6653-01 1 24124672 24124672 C T GALE Missense_Mutation p.E96K 0.43 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 1 241756761 241756761 A G OPN3 3'UTR 0.49 TCGA-A6-6653-01 1 244218999 244218999 T - ZBTB18 3'UTR 0.25 TCGA-A6-6653-01 1 244528021 244528021 C T C1orf100 Nonsense_Mutation p.R7* 0.18 TCGA-A6-6653-01 1 245704239 245704239 C T KIF26B Missense_Mutation p.P446L 0.33 deleterious(0) unknown(0) TCGA-A6-6653-01 1 247587258 247587258 G A NLRP3 Silent p.L171L 0.30 TCGA-A6-6653-01 1 247875754 247875754 A G OR6F1 Missense_Mutation p.Y102H 0.29 deleterious(0.02) benign(0.053) TCGA-A6-6653-01 1 247978492 247978492 G T OR14A16 Silent p.P180P 0.47 TCGA-A6-6653-01 1 248402261 248402261 A G OR2M4 Missense_Mutation p.I11V 0.40 deleterious(0.01) benign(0) TCGA-A6-6653-01 1 249142505 249142505 C T ZNF672 Silent p.C344C 0.44 TCGA-A6-6653-01 1 2518319 2518319 G A FAM213B Missense_Mutation p.A29T 0.40 deleterious_low_confidence(0.02) benign(0.23) TCGA-A6-6653-01 1 25785185 25785186 - A TMEM57 Frame_Shift_Ins p.N321Kfs*17 0.38 TCGA-A6-6653-01 1 27226742 27226743 AG - GPATCH3 Frame_Shift_Del p.S64Cfs*10 0.52 TCGA-A6-6653-01 1 29447799 29447799 A G TMEM200B Missense_Mutation p.V181A 0.39 tolerated(0.34) benign(0.001) TCGA-A6-6653-01 1 29475698 29475703 GGCTCC - SRSF4 In_Frame_Del p.R235_S236del 0.23 TCGA-A6-6653-01 1 32503533 32503533 C - KHDRBS1 Frame_Shift_Del p.P336Hfs*4 0.38 TCGA-A6-6653-01 1 32658274 32658274 T C TXLNA Missense_Mutation p.V367A 0.13 tolerated(1) benign(0.01) TCGA-A6-6653-01 1 3328613 3328613 A G PRDM16 Missense_Mutation p.T618A 0.24 tolerated(0.07) probably_damaging(0.998) TCGA-A6-6653-01 1 3342161 3342161 C T PRDM16 Missense_Mutation p.R986C 0.36 deleterious(0.01) benign(0.159) TCGA-A6-6653-01 1 34238305 34238305 G A CSMD2 Missense_Mutation p.R531W 0.30 tolerated(0.18) benign(0.002) TCGA-A6-6653-01 1 35227397 35227397 C T GJB4 Missense_Mutation p.T181M 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-A6-6653-01 1 35320694 35320694 G - SMIM12 3'UTR 0.43 TCGA-A6-6653-01 1 35370775 35370775 C T DLGAP3 Silent p.S70S 0.31 TCGA-A6-6653-01 1 35884111 35884111 A C ZMYM4 Silent p.A1459A 0.37 TCGA-A6-6653-01 1 3644706 3644706 C - TP73 Frame_Shift_Del p.P335Lfs*10 0.55 TCGA-A6-6653-01 1 37499647 37499647 C T GRIK3 Silent p.V21V 0.43 TCGA-A6-6653-01 1 38330037 38330037 A - INPP5B Frame_Shift_Del p.L858Cfs*5 0.37 TCGA-A6-6653-01 1 38463042 38463042 G A FHL3 3'UTR 0.26 TCGA-A6-6653-01 1 38511404 38511404 G A POU3F1 Missense_Mutation p.R338C 0.38 deleterious(0) possibly_damaging(0.55) TCGA-A6-6653-01 1 39844881 39844881 C T MACF1 Missense_Mutation p.T2366M 0.33 probably_damaging(1) TCGA-A6-6653-01 1 39913441 39913441 T C MACF1 Silent p.L4554L 0.31 TCGA-A6-6653-01 1 40092402 40092402 G A HEYL Missense_Mutation p.A255V 0.28 tolerated(0.06) benign(0.011) TCGA-A6-6653-01 1 40703822 40703822 A - RLF Frame_Shift_Del p.K1151Sfs*12 0.34 TCGA-A6-6653-01 1 40770064 40770064 C A COL9A2 Splice_Site p.X406_splice 0.34 TCGA-A6-6653-01 1 40773119 40773119 G A COL9A2 Missense_Mutation p.A336V 0.23 tolerated(0.08) possibly_damaging(0.798) TCGA-A6-6653-01 1 42914285 42914285 T C ZMYND12 Missense_Mutation p.T93A 0.36 tolerated(0.29) benign(0.05) TCGA-A6-6653-01 1 43613674 43613674 C A FAM183A Missense_Mutation p.Q18K 0.21 tolerated(0.54) benign(0.318) TCGA-A6-6653-01 1 43738960 43738960 C A TMEM125 Silent p.G189G 0.39 TCGA-A6-6653-01 1 43830951 43830951 C T ELOVL1 Missense_Mutation p.R48H 0.34 deleterious(0) probably_damaging(0.967) TCGA-A6-6653-01 1 45250928 45250928 C T BEST4 Missense_Mutation p.R255H 0.33 deleterious(0.01) possibly_damaging(0.867) TCGA-A6-6653-01 1 45288266 45288266 C - PTCH2 Frame_Shift_Del p.A1145Hfs*12 0.37 TCGA-A6-6653-01 1 46087125 46087125 G A CCDC17 Missense_Mutation p.R406W 0.47 tolerated(0.05) benign(0.347) TCGA-A6-6653-01 1 48703421 48703421 C T SLC5A9 Nonsense_Mutation p.Q480* 0.40 TCGA-A6-6653-01 1 52237797 52237797 C T OSBPL9 Missense_Mutation p.R342C 0.33 tolerated(0.09) benign(0.001) TCGA-A6-6653-01 1 52880517 52880517 G A PRPF38A Missense_Mutation p.R278H 0.46 deleterious(0.02) unknown(0) TCGA-A6-6653-01 1 53323341 53323341 C T ZYG11A Missense_Mutation p.R310W 0.33 deleterious(0) probably_damaging(0.993) TCGA-A6-6653-01 1 53420462 53420462 A G SCP2 Missense_Mutation p.S128G 0.36 deleterious(0.01) benign(0.001) TCGA-A6-6653-01 1 53608221 53608221 G T SLC1A7 5'UTR 0.73 TCGA-A6-6653-01 1 65278425 65278425 C T RAVER2 Missense_Mutation p.A549V 0.43 tolerated(0.23) benign(0.007) TCGA-A6-6653-01 1 6674112 6674112 C - PHF13 5'UTR 0.39 TCGA-A6-6653-01 1 67207079 67207079 A G SGIP1 Silent p.A808A 0.40 TCGA-A6-6653-01 1 68624855 68624855 G A WLS Missense_Mutation p.A150V 0.27 tolerated(0.1) benign(0.029) TCGA-A6-6653-01 1 70502249 70502249 G A LRRC7 Missense_Mutation p.V706M 0.43 tolerated_low_confidence(0.58) benign(0.005) TCGA-A6-6653-01 1 70896079 70896079 T C CTH Splice_Site p.X242_splice 0.39 TCGA-A6-6653-01 1 71513109 71513109 G A PTGER3 Missense_Mutation p.S51F 0.41 deleterious(0) probably_damaging(0.993) TCGA-A6-6653-01 1 7724942 7724942 G A CAMTA1 Missense_Mutation p.D779N 0.27 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-A6-6653-01 1 78001645 78001645 C T AK5 Silent p.I514I 0.50 TCGA-A6-6653-01 1 78408582 78408582 T A NEXN 3'UTR 0.39 TCGA-A6-6653-01 1 78429831 78429831 G A FUBP1 Silent p.P319P 0.34 TCGA-A6-6653-01 1 7995117 7995117 G A TNFRSF9 Missense_Mutation p.P167L 0.35 tolerated(0.28) benign(0.015) TCGA-A6-6653-01 1 8073177 8073177 A G ERRFI1 3'UTR 0.24 TCGA-A6-6653-01 1 86965354 86965354 C A CLCA1 Silent p.R791R 0.44 TCGA-A6-6653-01 1 886572 886572 G A NOC2L Missense_Mutation p.R460C 0.43 deleterious(0) probably_damaging(0.931) TCGA-A6-6653-01 1 89271228 89271228 G T PKN2 Missense_Mutation p.W517L 0.37 deleterious(0.01) probably_damaging(0.959) TCGA-A6-6653-01 1 89523682 89523682 G A GBP1 Silent p.N289N 0.38 TCGA-A6-6653-01 20 13561564 13561564 C T TASP1 Silent p.S156S 0.36 TCGA-A6-6653-01 20 13610608 13610608 G A TASP1 Nonsense_Mutation p.R40* 0.28 TCGA-A6-6653-01 20 13797171 13797171 G A NDUFAF5 Missense_Mutation p.A281T 0.41 deleterious(0) probably_damaging(0.992) TCGA-A6-6653-01 20 16486445 16486445 C T KIF16B Missense_Mutation p.V308M 0.46 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 20 17639536 17639536 T - RRBP1 Intron 0.38 TCGA-A6-6653-01 20 18163850 18163850 C T CSRP2BP Missense_Mutation p.T631M 0.37 tolerated(0.11) benign(0.011) TCGA-A6-6653-01 20 18424017 18424017 G A DZANK1 Missense_Mutation p.R241C 0.41 deleterious(0.03) benign(0.057) TCGA-A6-6653-01 20 2297850 2297850 G A TGM3 Missense_Mutation p.R269Q 0.55 tolerated(0.21) benign(0.237) TCGA-A6-6653-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.60 TCGA-A6-6653-01 20 24646034 24646034 G A SYNDIG1 Missense_Mutation p.R224Q 0.49 deleterious(0) possibly_damaging(0.555) TCGA-A6-6653-01 20 25259747 25259747 C T PYGB Missense_Mutation p.R352W 0.47 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 20 33345198 33345198 C T NCOA6 Silent p.Q451Q 0.12 TCGA-A6-6653-01 20 33764078 33764078 C T PROCR Missense_Mutation p.R144W 0.44 deleterious(0) probably_damaging(0.938) TCGA-A6-6653-01 20 34761778 34761778 G A EPB41L1 Missense_Mutation p.A27T 0.42 tolerated(0.08) benign(0.003) TCGA-A6-6653-01 20 36956012 36956012 T C BPI Missense_Mutation p.V399A 0.21 tolerated(0.06) benign(0.343) TCGA-A6-6653-01 20 376932 376932 C T TRIB3 Silent p.Y225Y 0.37 TCGA-A6-6653-01 20 39802571 39802571 G A PLCG1 Missense_Mutation p.A1189T 0.30 deleterious(0.03) benign(0.103) TCGA-A6-6653-01 20 39987095 39987095 G A LPIN3 Missense_Mutation p.R775Q 0.11 deleterious(0.03) benign(0.055) TCGA-A6-6653-01 20 40033394 40033394 C - CHD6 Frame_Shift_Del p.D2663Tfs*59 0.37 TCGA-A6-6653-01 20 40050675 40050675 G A CHD6 Missense_Mutation p.R1534C 0.41 deleterious(0) possibly_damaging(0.868) TCGA-A6-6653-01 20 42683071 42683071 G A TOX2 Missense_Mutation p.A262T 0.17 deleterious(0) probably_damaging(0.994) TCGA-A6-6653-01 20 43851178 43851179 AA - SEMG2 Frame_Shift_Del p.K303Efs*16 0.36 TCGA-A6-6653-01 20 44162971 44162971 G T WFDC6 3'UTR 0.58 TCGA-A6-6653-01 20 44513009 44513009 T C ZSWIM1 3'UTR 0.46 TCGA-A6-6653-01 20 44708030 44708030 G A NCOA5 Nonsense_Mutation p.R12* 0.44 TCGA-A6-6653-01 20 45012109 45012109 G A ELMO2 Silent p.Y234Y 0.26 TCGA-A6-6653-01 20 45905320 45905320 G A ZMYND8 Silent p.A406A 0.33 TCGA-A6-6653-01 20 47864500 47864502 CTC - ZNFX1 In_Frame_Del p.E1687del 0.18 TCGA-A6-6653-01 20 47990628 47990628 C A KCNB1 Missense_Mutation p.W490L 0.42 tolerated_low_confidence(0.1) possibly_damaging(0.907) TCGA-A6-6653-01 20 4842634 4842634 G A SLC23A2 Silent p.L528L 0.28 TCGA-A6-6653-01 20 52193041 52193041 G A ZNF217 Silent p.T754T 0.44 TCGA-A6-6653-01 20 5283333 5283333 C T PROKR2 Missense_Mutation p.A170T 0.30 tolerated(0.07) possibly_damaging(0.644) TCGA-A6-6653-01 20 54578957 54578957 G A CBLN4 Missense_Mutation p.R91C 0.18 deleterious(0.02) possibly_damaging(0.806) TCGA-A6-6653-01 20 56735727 56735727 C - C20orf85 Frame_Shift_Del p.P90Qfs*19 0.45 TCGA-A6-6653-01 20 58521343 58521343 G A FAM217B 3'UTR 0.39 TCGA-A6-6653-01 20 60854257 60854258 - C OSBPL2 Frame_Shift_Ins p.I182Hfs*12 0.39 TCGA-A6-6653-01 20 60886465 60886465 C T LAMA5 Missense_Mutation p.A3312T 0.42 benign(0.1) TCGA-A6-6653-01 20 60898653 60898653 C T LAMA5 Missense_Mutation p.G1975S 0.44 possibly_damaging(0.612) TCGA-A6-6653-01 20 60907463 60907463 C T LAMA5 Missense_Mutation p.V1173M 0.49 probably_damaging(0.963) TCGA-A6-6653-01 20 61527666 61527666 A - DIDO1 Frame_Shift_Del p.F711Lfs*22 0.29 TCGA-A6-6653-01 20 61870858 61870858 G A BIRC7 Silent p.P266P 0.09 TCGA-A6-6653-01 20 61917460 61917460 C - ARFGAP1 Intron 0.32 TCGA-A6-6653-01 20 62126325 62126325 C T EEF1A2 Missense_Mutation p.V152M 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-A6-6653-01 20 62172855 62172855 G A SRMS Silent p.N355N 0.43 TCGA-A6-6653-01 20 62193892 62193892 G A HELZ2 Missense_Mutation p.P2095S 0.36 tolerated(0.1) benign(0.063) TCGA-A6-6653-01 20 62194453 62194453 C T HELZ2 Missense_Mutation p.G1908S 0.33 deleterious(0.03) probably_damaging(1) TCGA-A6-6653-01 20 62333230 62333230 C T ARFRP1 Silent p.A123A 0.46 TCGA-A6-6653-01 20 62367290 62367290 G A ZGPAT 3'UTR 0.42 TCGA-A6-6653-01 20 62729805 62729805 C T OPRL1 Missense_Mutation p.R256W 0.36 deleterious(0) probably_damaging(0.961) TCGA-A6-6653-01 20 9389282 9389282 C T PLCB4 Missense_Mutation p.R586C 0.31 deleterious(0) possibly_damaging(0.676) TCGA-A6-6653-01 21 11029712 11029712 A C BAGE2 RNA 0.09 TCGA-A6-6653-01 21 27347431 27347431 G T APP Silent p.R470R 0.64 TCGA-A6-6653-01 21 38460554 38460554 C T TTC3 Silent p.C82C 0.73 TCGA-A6-6653-01 21 43711634 43711634 C T ABCG1 Silent p.S519S 0.54 TCGA-A6-6653-01 21 46311898 46311898 A G ITGB2 Missense_Mutation p.V413A 0.65 deleterious(0) probably_damaging(0.973) TCGA-A6-6653-01 21 47737158 47737158 C T C21orf58 Missense_Mutation p.V112M 0.17 tolerated(1) benign(0.004) TCGA-A6-6653-01 21 47858194 47858194 G A PCNT Missense_Mutation p.V3073M 0.63 possibly_damaging(0.868) TCGA-A6-6653-01 22 16287421 16287421 G T POTEH Silent p.G155G 0.69 TCGA-A6-6653-01 22 17583071 17583071 C A IL17RA Missense_Mutation p.A214D 0.12 tolerated(0.75) benign(0.023) TCGA-A6-6653-01 22 18897697 18897697 C T DGCR6 Missense_Mutation p.A95V 0.41 tolerated(0.25) benign(0.018) TCGA-A6-6653-01 22 20078993 20078993 T C DGCR8 Missense_Mutation p.F448L 0.46 deleterious(0) benign(0.327) TCGA-A6-6653-01 22 21563359 21563359 G A GGT2 Missense_Mutation p.T422M 0.25 deleterious(0) benign(0.318) TCGA-A6-6653-01 22 21799992 21799992 G A HIC2 Missense_Mutation p.A270T 0.33 tolerated(0.6) benign(0) TCGA-A6-6653-01 22 22868883 22868883 T C ZNF280A Missense_Mutation p.I358V 0.40 deleterious(0.03) benign(0.003) TCGA-A6-6653-01 22 24225987 24225987 G A SLC2A11 Missense_Mutation p.R345H 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-A6-6653-01 22 25150757 25150757 C T PIWIL3 Missense_Mutation p.R256H 0.44 deleterious(0.03) benign(0.301) TCGA-A6-6653-01 22 28378635 28378635 G A TTC28 Silent p.P2340P 0.30 TCGA-A6-6653-01 22 29442797 29442797 G - ZNRF3 Frame_Shift_Del p.A281Pfs*58 0.47 TCGA-A6-6653-01 22 29706492 29706492 G T GAS2L1 Missense_Mutation p.G233W 0.14 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 22 31501210 31501210 C T SELM Missense_Mutation p.R88H 0.31 tolerated(0.53) benign(0.042) TCGA-A6-6653-01 22 33255323 33255324 - C TIMP3 Frame_Shift_Ins p.D202Gfs*2 0.26 TCGA-A6-6653-01 22 35812391 35812391 C T MCM5 Silent p.I469I 0.41 TCGA-A6-6653-01 22 36623938 36623938 G A APOL2 Missense_Mutation p.R176W 0.43 tolerated(0.1) benign(0.002) TCGA-A6-6653-01 22 36697055 36697055 C T MYH9 Missense_Mutation p.E894K 0.39 possibly_damaging(0.739) TCGA-A6-6653-01 22 36714301 36714301 C T MYH9 Missense_Mutation p.R393H 0.32 probably_damaging(0.932) TCGA-A6-6653-01 22 36906999 36906999 G T EIF3D 3'UTR 0.09 TCGA-A6-6653-01 22 38019439 38019439 G A GGA1 Missense_Mutation p.G239S 0.33 tolerated(0.34) benign(0.01) TCGA-A6-6653-01 22 38478012 38478012 C T SLC16A8 Missense_Mutation p.R81H 0.29 deleterious(0.01) possibly_damaging(0.782) TCGA-A6-6653-01 22 38823479 38823479 C T KCNJ4 Missense_Mutation p.R220Q 0.42 deleterious(0.03) probably_damaging(1) TCGA-A6-6653-01 22 38963610 38963610 T C DMC1 Missense_Mutation p.D25G 0.51 deleterious(0.03) benign(0.253) TCGA-A6-6653-01 22 39529777 39529777 T - CBX7 3'UTR 0.39 TCGA-A6-6653-01 22 39885634 39885634 G A MGAT3 3'UTR 0.43 TCGA-A6-6653-01 22 40658048 40658048 C - TNRC6B Frame_Shift_Del p.P111Lfs*29 0.32 TCGA-A6-6653-01 22 40661866 40661866 C - TNRC6B Frame_Shift_Del p.L546Sfs*63 0.15 TCGA-A6-6653-01 22 40800657 40800657 G A SGSM3 Missense_Mutation p.A155T 0.45 tolerated(0.6) benign(0.023) TCGA-A6-6653-01 22 41652732 41652732 C T RANGAP1 Missense_Mutation p.G291S 0.33 deleterious(0.04) benign(0.29) TCGA-A6-6653-01 22 41832472 41832472 G A TOB2 Missense_Mutation p.T293I 0.49 tolerated(0.38) benign(0.021) TCGA-A6-6653-01 22 41903903 41903903 C T ACO2 Silent p.D94D 0.32 TCGA-A6-6653-01 22 42046842 42046842 A G XRCC6 Missense_Mutation p.H359R 0.17 deleterious(0.02) benign(0.056) TCGA-A6-6653-01 22 42263057 42263057 C T SREBF2 Missense_Mutation p.A104V 0.42 tolerated(0.41) benign(0.038) TCGA-A6-6653-01 22 43267390 43267390 C T PACSIN2 Silent p.P478P 0.42 TCGA-A6-6653-01 22 45795033 45795033 T - SMC1B Frame_Shift_Del p.K352Sfs*31 0.32 TCGA-A6-6653-01 22 46765084 46765084 T - CELSR1 Frame_Shift_Del p.I2650Sfs*5 0.44 TCGA-A6-6653-01 22 50217889 50217889 G T BRD1 Missense_Mutation p.P26H 0.29 deleterious(0) probably_damaging(0.99) TCGA-A6-6653-01 22 50615520 50615520 G A PANX2 Missense_Mutation p.A127T 0.57 tolerated(0.1) possibly_damaging(0.57) TCGA-A6-6653-01 22 50682908 50682908 C - TUBGCP6 5'UTR 0.55 TCGA-A6-6653-01 22 50887067 50887067 G A SBF1 Silent p.L1686L 0.44 TCGA-A6-6653-01 2 102851401 102851401 C T IL1RL2 Silent p.L448L 0.41 TCGA-A6-6653-01 2 106710408 106710408 C T UXS1 3'UTR 0.44 TCGA-A6-6653-01 2 11758887 11758887 C T GREB1 Missense_Mutation p.R1296C 0.36 deleterious(0) probably_damaging(0.969) TCGA-A6-6653-01 2 118575254 118575255 - A DDX18 Frame_Shift_Ins p.K110Efs*11 0.35 TCGA-A6-6653-01 2 118579783 118579783 A C DDX18 Missense_Mutation p.I338L 0.37 deleterious(0.02) benign(0.419) TCGA-A6-6653-01 2 118866047 118866047 T C INSIG2 3'UTR 0.16 TCGA-A6-6653-01 2 122187744 122187744 C T CLASP1 Missense_Mutation p.R641H 0.49 deleterious(0) possibly_damaging(0.609) TCGA-A6-6653-01 2 125672808 125672808 C T CNTNAP5 3'UTR 0.41 TCGA-A6-6653-01 2 127453896 127453896 C T GYPC 3'UTR 0.29 TCGA-A6-6653-01 2 128065093 128065093 T G MAP3K2 3'UTR 0.29 TCGA-A6-6653-01 2 128522180 128522180 T C WDR33 Intron 0.36 TCGA-A6-6653-01 2 130931109 130931109 C T SMPD4 Missense_Mutation p.V122M 0.31 tolerated(0.06) benign(0.07) TCGA-A6-6653-01 2 131128512 131128513 - C PTPN18 Frame_Shift_Ins p.H302Pfs*51 0.32 TCGA-A6-6653-01 2 131797645 131797645 C T ARHGEF4 Silent p.S268S 0.49 TCGA-A6-6653-01 2 133402951 133402951 G A GPR39 Silent p.A378A 0.40 TCGA-A6-6653-01 2 133541624 133541624 C T NCKAP5 Silent p.P920P 0.48 TCGA-A6-6653-01 2 135744133 135744134 TT - MAP3K19 Frame_Shift_Del p.K770Vfs*5 0.29 TCGA-A6-6653-01 2 138771391 138771392 - C HNMT Frame_Shift_Ins p.Q192Pfs*3 0.30 TCGA-A6-6653-01 2 150064896 150064896 C T LYPD6B Nonsense_Mutation p.R100* 0.38 TCGA-A6-6653-01 2 152536255 152536255 C A NEB Missense_Mutation p.A1079S 0.33 benign(0.341) TCGA-A6-6653-01 2 15651347 15651347 C T NBAS Missense_Mutation p.G292R 0.38 tolerated(0.47) benign(0) TCGA-A6-6653-01 2 160087103 160087103 G A TANC1 Silent p.P1722P 0.43 TCGA-A6-6653-01 2 166020157 166020157 C T SCN3A Missense_Mutation p.R222Q 0.36 deleterious(0) probably_damaging(0.964) TCGA-A6-6653-01 2 166245158 166245158 G C SCN2A Silent p.L1614L 0.30 TCGA-A6-6653-01 2 170728830 170728830 T C UBR3 Silent p.L210L 0.19 TCGA-A6-6653-01 2 177015051 177015052 TA - HOXD3 5'Flank 0.49 TCGA-A6-6653-01 2 179259155 179259155 T A OSBPL6 Missense_Mutation p.F922I 0.37 deleterious(0) possibly_damaging(0.627) TCGA-A6-6653-01 2 179417374 179417374 T C TTN Missense_Mutation p.T30085A 0.36 TCGA-A6-6653-01 2 179431071 179431071 G A TTN Silent p.S26596S 0.46 TCGA-A6-6653-01 2 179457370 179457370 G T TTN Missense_Mutation p.L19788I 0.42 TCGA-A6-6653-01 2 179464365 179464365 G A TTN Missense_Mutation p.R18755C 0.44 TCGA-A6-6653-01 2 179513976 179513976 T - TTN Frame_Shift_Del p.V13353Cfs*36 0.31 TCGA-A6-6653-01 2 179596621 179596621 C T TTN Missense_Mutation p.A5661T 0.46 TCGA-A6-6653-01 2 179615347 179615347 T - TTN Intron 0.32 TCGA-A6-6653-01 2 179636002 179636002 A G TTN Silent p.D2684D 0.08 TCGA-A6-6653-01 2 180008366 180008366 G A SESTD1 Missense_Mutation p.R268C 0.35 deleterious(0) possibly_damaging(0.642) TCGA-A6-6653-01 2 185803770 185803770 A - ZNF804A 3'UTR 0.32 TCGA-A6-6653-01 2 186670981 186670981 C T FSIP2 Nonsense_Mutation p.R5739* 0.47 TCGA-A6-6653-01 2 191845359 191845359 G A STAT1 Missense_Mutation p.T540M 0.33 deleterious(0) possibly_damaging(0.773) TCGA-A6-6653-01 2 192701298 192701299 - G SDPR Frame_Shift_Ins p.H210Pfs*3 0.37 TCGA-A6-6653-01 2 196545560 196545560 G A SLC39A10 Missense_Mutation p.R265Q 0.33 tolerated(0.1) benign(0.013) TCGA-A6-6653-01 2 196673581 196673581 C A DNAH7 Missense_Mutation p.R3303I 0.28 tolerated(0.34) benign(0.011) TCGA-A6-6653-01 2 200820435 200820436 TC - C2orf47 5'UTR 0.35 TCGA-A6-6653-01 2 201853062 201853062 A G FAM126B Missense_Mutation p.V305A 0.17 deleterious(0.05) probably_damaging(0.997) TCGA-A6-6653-01 2 202251104 202251104 G A TRAK2 Silent p.P600P 0.40 TCGA-A6-6653-01 2 20232863 20232864 AT - LAPTM4A 3'UTR 0.34 TCGA-A6-6653-01 2 203806678 203806679 - A CARF Frame_Shift_Ins p.T20Nfs*7 0.35 TCGA-A6-6653-01 2 203972189 203972189 T C NBEAL1 Missense_Mutation p.L410S 0.38 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 2 20402886 20402887 - C SDC1 Frame_Shift_Ins p.A242Gfs*131 0.35 TCGA-A6-6653-01 2 208866336 208866336 T G PLEKHM3 Missense_Mutation p.S10R 0.36 deleterious(0) probably_damaging(0.997) TCGA-A6-6653-01 2 209025577 209025577 C - CRYGA Frame_Shift_Del p.G159Vfs*9 0.30 TCGA-A6-6653-01 2 210786240 210786240 G A UNC80 Missense_Mutation p.R1721Q 0.47 possibly_damaging(0.742) TCGA-A6-6653-01 2 218696204 218696204 G A TNS1 Missense_Mutation p.A991V 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-A6-6653-01 2 219114602 219114602 G A ARPC2 Missense_Mutation p.R279H 0.39 deleterious(0.01) benign(0.142) TCGA-A6-6653-01 2 219603127 219603127 C T TTLL4 Missense_Mutation p.S243L 0.54 deleterious(0.02) benign(0.3) TCGA-A6-6653-01 2 219870796 219870796 G A CCDC108 Silent p.T1623T 0.38 TCGA-A6-6653-01 2 220037412 220037413 - G CNPPD1 Frame_Shift_Ins p.W377Lfs*50 0.53 TCGA-A6-6653-01 2 220370081 220370081 C T GMPPA Missense_Mutation p.A251V 0.34 deleterious(0) possibly_damaging(0.791) TCGA-A6-6653-01 2 220439701 220439702 CT - INHA Frame_Shift_Del p.L188Afs*22 0.38 TCGA-A6-6653-01 2 220501418 220501418 A T SLC4A3 Missense_Mutation p.D813V 0.34 deleterious(0.01) benign(0.23) TCGA-A6-6653-01 2 223917680 223917680 C A KCNE4 Silent p.S44S 0.37 TCGA-A6-6653-01 2 224463537 224463537 T G SCG2 Missense_Mutation p.Q155P 0.40 tolerated(0.43) possibly_damaging(0.807) TCGA-A6-6653-01 2 224866599 224866599 G - SERPINE2 Frame_Shift_Del p.L19Sfs*7 0.48 TCGA-A6-6653-01 2 227871958 227871958 C A COL4A4 3'UTR 0.36 TCGA-A6-6653-01 2 228173723 228173723 C T COL4A3 Missense_Mutation p.S1524L 0.36 unknown(0) TCGA-A6-6653-01 2 233245498 233273579 2:233245498-233273579 - ALPP large deletion 0.28 TCGA-A6-6653-01 2 233245708 233245708 G A ALPP Missense_Mutation p.G387R 0.50 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 2 233744230 233744230 C T NGEF Missense_Mutation p.R701H 0.15 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-A6-6653-01 2 233748705 233748705 G A NGEF Silent p.C529C 0.30 TCGA-A6-6653-01 2 234847649 234847649 G A TRPM8 Missense_Mutation p.R119H 0.43 deleterious(0) possibly_damaging(0.621) TCGA-A6-6653-01 2 236945316 236945316 A G AGAP1 Missense_Mutation p.Q586R 0.30 deleterious(0.04) probably_damaging(0.996) TCGA-A6-6653-01 2 238283448 238283448 G A COL6A3 Missense_Mutation p.R1096C 0.49 probably_damaging(0.99) TCGA-A6-6653-01 2 23865348 23865348 C T KLHL29 Missense_Mutation p.P190S 0.37 tolerated_low_confidence(0.09) benign(0.306) TCGA-A6-6653-01 2 238725800 238725801 TT - RBM44 Frame_Shift_Del p.V84Efs*5 0.37 TCGA-A6-6653-01 2 239140958 239140958 C T AC016757.3 5'Flank 0.36 TCGA-A6-6653-01 2 239170971 239170971 C T PER2 Missense_Mutation p.G390R 0.52 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 2 240969066 240969066 G A OR6B2 Missense_Mutation p.R261W 0.40 deleterious(0.03) possibly_damaging(0.643) TCGA-A6-6653-01 2 241463416 241463416 G A ANKMY1 Missense_Mutation p.A484V 0.57 tolerated(0.12) benign(0.222) TCGA-A6-6653-01 2 242509580 242509580 C T BOK Silent p.A130A 0.53 TCGA-A6-6653-01 2 25354338 25354338 G A EFR3B Silent p.S317S 0.50 TCGA-A6-6653-01 2 272081 272081 C - ACP1 Intron 0.49 TCGA-A6-6653-01 2 27278901 27278901 C - AGBL5 Frame_Shift_Del p.E424Rfs*44 0.36 TCGA-A6-6653-01 2 27880332 27880332 T C SUPT7L Silent p.G208G 0.38 TCGA-A6-6653-01 2 27930353 27930353 A - AC074091.13 3'UTR 0.39 TCGA-A6-6653-01 2 29294049 29294049 G A C2orf71 Nonsense_Mutation p.Q1027* 0.43 TCGA-A6-6653-01 2 3627776 3627776 C T RPS7 Missense_Mutation p.R145C 0.36 deleterious(0.01) benign(0.383) TCGA-A6-6653-01 2 37334299 37334299 A - EIF2AK2 3'UTR 0.28 TCGA-A6-6653-01 2 37368716 37368716 C T EIF2AK2 Silent p.S123S 0.36 TCGA-A6-6653-01 2 42909547 42909547 G A MTA3 Missense_Mutation p.A237T 0.36 deleterious(0.02) possibly_damaging(0.538) TCGA-A6-6653-01 2 44021481 44021481 T - DYNC2LI1 Intron 0.61 TCGA-A6-6653-01 2 45169844 45169844 C T SIX3 Missense_Mutation p.R201C 0.20 deleterious(0) benign(0.055) TCGA-A6-6653-01 2 50733692 50733692 C T NRXN1 Missense_Mutation p.R853H 0.40 deleterious(0) benign(0.18) TCGA-A6-6653-01 2 50765468 50765468 C T NRXN1 Missense_Mutation p.G729D 0.37 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 2 55561978 55561978 G A CCDC88A Missense_Mutation p.A660V 0.41 tolerated(0.29) benign(0.009) TCGA-A6-6653-01 2 55582856 55582856 C T CCDC88A Missense_Mutation p.G220D 0.34 tolerated(0.1) benign(0.139) TCGA-A6-6653-01 2 5835363 5835363 A G SOX11 3'UTR 0.39 TCGA-A6-6653-01 2 5838667 5838667 A G SOX11 3'UTR 0.41 TCGA-A6-6653-01 2 5841056 5841056 G - SOX11 3'UTR 0.32 TCGA-A6-6653-01 2 60688018 60688018 C T BCL11A Missense_Mutation p.G677R 0.32 deleterious(0.01) probably_damaging(0.956) TCGA-A6-6653-01 2 65357064 65357064 C T RAB1A 5'UTR 0.44 TCGA-A6-6653-01 2 68544334 68544334 G A CNRIP1 Silent p.T95T 0.30 TCGA-A6-6653-01 2 68607874 68607874 C T PLEK Missense_Mutation p.T73M 0.35 deleterious(0.04) possibly_damaging(0.779) TCGA-A6-6653-01 2 71047008 71047008 G A CLEC4F Missense_Mutation p.A26V 0.49 tolerated(0.06) benign(0.367) TCGA-A6-6653-01 2 71300609 71300609 C A NAGK Intron 0.38 TCGA-A6-6653-01 2 73315689 73315689 G A RAB11FIP5 Missense_Mutation p.R353W 0.47 deleterious(0.01) probably_damaging(0.969) TCGA-A6-6653-01 2 73490342 73490343 - G FBXO41 Frame_Shift_Ins p.C724Lfs*9 0.43 TCGA-A6-6653-01 2 73520341 73520341 C A EGR4 Missense_Mutation p.R138S 0.61 deleterious(0) benign(0.392) TCGA-A6-6653-01 2 74146755 74146755 T C ACTG2 3'UTR 0.33 TCGA-A6-6653-01 2 74328761 74328761 C - TET3 Frame_Shift_Del p.S1483Afs*5 0.33 TCGA-A6-6653-01 2 74653678 74653678 C T RTKN Missense_Mutation p.A462T 0.46 deleterious(0.04) probably_damaging(0.916) TCGA-A6-6653-01 2 74687456 74687456 G A WBP1 Missense_Mutation p.S153N 0.41 deleterious(0.04) benign(0.004) TCGA-A6-6653-01 2 75278523 75278523 G A TACR1 Missense_Mutation p.P263S 0.23 deleterious(0) probably_damaging(0.986) TCGA-A6-6653-01 2 89185575 89185575 G A IGKV4-1 Missense_Mutation p.G90D 0.44 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 2 90260003 90260003 T A IGKV1D-8 Missense_Mutation p.S36T 0.39 deleterious(0.05) benign(0.338) TCGA-A6-6653-01 2 99012374 99012374 G A CNGA3 Silent p.T247T 0.47 TCGA-A6-6653-01 3 101484239 101484239 C T CEP97 Silent p.D814D 0.35 TCGA-A6-6653-01 3 10320651 10320651 C A TATDN2 Missense_Mutation p.P743Q 0.45 deleterious(0) probably_damaging(0.936) TCGA-A6-6653-01 3 108172899 108172899 G A MYH15 Nonsense_Mutation p.Q805* 0.36 TCGA-A6-6653-01 3 11058995 11058995 A C SLC6A1 Missense_Mutation p.K33T 0.44 tolerated(0.44) benign(0.004) TCGA-A6-6653-01 3 11301950 11301950 C T HRH1 Silent p.R409R 0.40 TCGA-A6-6653-01 3 115342544 115342544 G A GAP43 5'UTR 0.45 TCGA-A6-6653-01 3 122646714 122646714 C T SEMA5B Missense_Mutation p.R312Q 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-A6-6653-01 3 123010154 123010154 G A ADCY5 Missense_Mutation p.P1045S 0.35 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 3 123018972 123018972 G A ADCY5 Silent p.N965N 0.42 TCGA-A6-6653-01 3 125691004 125691004 G - ROPN1B Frame_Shift_Del p.A38Pfs*15 0.54 TCGA-A6-6653-01 3 127399146 127399148 AGG - ABTB1 In_Frame_Del p.E424del 0.64 TCGA-A6-6653-01 3 127439970 127439970 G A MGLL Missense_Mutation p.P146S 0.53 deleterious(0.02) possibly_damaging(0.475) TCGA-A6-6653-01 3 129218765 129218765 C T IFT122 Silent p.D794D 0.31 TCGA-A6-6653-01 3 129247785 129247785 C T RHO Missense_Mutation p.T70M 0.30 deleterious(0.02) probably_damaging(0.953) TCGA-A6-6653-01 3 130114019 130114019 T C COL6A5 Silent p.N1093N 0.42 TCGA-A6-6653-01 3 130289826 130289826 G T COL6A6 Missense_Mutation p.D856Y 0.41 tolerated(0.22) possibly_damaging(0.794) TCGA-A6-6653-01 3 133099122 133099122 C T TMEM108 Silent p.G189G 0.43 TCGA-A6-6653-01 3 134322884 134322884 T G KY Missense_Mutation p.Q508P 0.34 tolerated(0.22) benign(0.162) TCGA-A6-6653-01 3 136002777 136002777 G A PCCB Silent p.T234T 0.41 TCGA-A6-6653-01 3 136141407 136141407 C T STAG1 Missense_Mutation p.V628I 0.38 tolerated(0.11) benign(0) TCGA-A6-6653-01 3 1369210 1369210 C A CNTN6 Missense_Mutation p.Q385K 0.22 deleterious(0.03) probably_damaging(1) TCGA-A6-6653-01 3 137822500 137822500 C T DZIP1L Missense_Mutation p.S105N 0.47 deleterious(0.02) probably_damaging(0.927) TCGA-A6-6653-01 3 140282008 140282008 T C CLSTN2 Silent p.H815H 0.42 TCGA-A6-6653-01 3 142773805 142773805 C - U2SURP Frame_Shift_Del p.S934Afs*11 0.35 TCGA-A6-6653-01 3 142775212 142775212 A - U2SURP Frame_Shift_Del p.K1005Nfs*30 0.42 TCGA-A6-6653-01 3 142840375 142840376 - G CHST2 Frame_Shift_Ins p.R242Afs*92 0.39 TCGA-A6-6653-01 3 148905839 148905839 A G CP Missense_Mutation p.S622P 0.33 deleterious(0) probably_damaging(0.989) TCGA-A6-6653-01 3 14974114 14974114 C T FGD5 Silent p.L1410L 0.40 TCGA-A6-6653-01 3 15057707 15057707 G A NR2C2 Missense_Mutation p.V127I 0.50 tolerated_low_confidence(0.48) benign(0.003) TCGA-A6-6653-01 3 151056583 151056583 G A P2RY12 Silent p.C17C 0.34 TCGA-A6-6653-01 3 151072916 151072916 C T MED12L Silent p.D767D 0.47 TCGA-A6-6653-01 3 151165683 151165683 C T IGSF10 Missense_Mutation p.A696T 0.35 tolerated(0.57) benign(0.002) TCGA-A6-6653-01 3 156983368 156983368 T - VEPH1 Frame_Shift_Del p.T738Hfs*27 0.27 TCGA-A6-6653-01 3 167245667 167245667 C T WDR49 Missense_Mutation p.A497T 0.39 tolerated(0.23) benign(0.088) TCGA-A6-6653-01 3 169504444 169504444 T - MYNN Frame_Shift_Del p.L606Yfs*19 0.35 TCGA-A6-6653-01 3 169656206 169656206 C A SAMD7 Missense_Mutation p.P418H 0.36 tolerated(0.53) benign(0.001) TCGA-A6-6653-01 3 169846879 169846879 G - PHC3 Frame_Shift_Del p.Q461Sfs*2 0.31 TCGA-A6-6653-01 3 170724992 170724992 C - SLC2A2 Frame_Shift_Del p.G186Efs*65 0.39 TCGA-A6-6653-01 3 171410184 171410184 C T PLD1 Missense_Mutation p.A426T 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 3 172363469 172363469 A G NCEH1 Silent p.Y167Y 0.37 TCGA-A6-6653-01 3 180680833 180680833 G A FXR1 Missense_Mutation p.G385R 0.34 tolerated(0.1) probably_damaging(0.991) TCGA-A6-6653-01 3 182989077 182989077 C T B3GNT5 3'UTR 0.31 TCGA-A6-6653-01 3 184064497 184064497 C T CLCN2 Missense_Mutation p.S865N 0.39 tolerated(0.14) benign(0.026) TCGA-A6-6653-01 3 185155400 185155400 C T MAP3K13 Missense_Mutation p.P214L 0.29 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 3 186838941 186838941 C A RPL39L Missense_Mutation p.G50C 0.40 deleterious(0.01) probably_damaging(0.922) TCGA-A6-6653-01 3 195022362 195022362 A G ACAP2 Missense_Mutation p.V446A 0.28 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 3 196388273 196388273 C T NRROS Missense_Mutation p.R587W 0.42 deleterious(0) possibly_damaging(0.724) TCGA-A6-6653-01 3 197616251 197616251 T C IQCG 3'UTR 0.33 TCGA-A6-6653-01 3 25636151 25636151 C T RARB Missense_Mutation p.R378C 0.34 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 3 36587688 36587688 C A STAC Nonsense_Mutation p.C372* 0.42 TCGA-A6-6653-01 3 3887097 3887097 G A LRRN1 Missense_Mutation p.A258T 0.10 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 3 42906441 42906441 T A ACKR2 Silent p.A149A 0.13 TCGA-A6-6653-01 3 42917227 42917227 G A CYP8B1 Missense_Mutation p.R28C 0.53 deleterious(0) possibly_damaging(0.87) TCGA-A6-6653-01 3 43122694 43122694 C T POMGNT2 Missense_Mutation p.R77H 0.41 deleterious(0) probably_damaging(0.991) TCGA-A6-6653-01 3 43389451 43389451 G T SNRK Missense_Mutation p.R567L 0.28 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-A6-6653-01 3 45130584 45130584 C G CDCP1 Silent p.L681L 0.47 TCGA-A6-6653-01 3 45944091 45944091 G T CCR9 3'UTR 0.40 TCGA-A6-6653-01 3 46010078 46010078 G A FYCO1 Missense_Mutation p.R250W 0.46 deleterious(0.03) benign(0.339) TCGA-A6-6653-01 3 46244895 46244895 C T CCR1 Missense_Mutation p.V304I 0.39 tolerated(0.05) benign(0.018) TCGA-A6-6653-01 3 46417156 46417157 - G CCR5 3'UTR 0.22 TCGA-A6-6653-01 3 47164921 47164921 C T SETD2 Missense_Mutation p.R402Q 0.43 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-6653-01 3 47890963 47890963 G A DHX30 Missense_Mutation p.R1037Q 0.32 deleterious(0.03) benign(0.084) TCGA-A6-6653-01 3 48413791 48413791 A G FBXW12 5'UTR 0.34 TCGA-A6-6653-01 3 48465622 48465622 C T PLXNB1 Silent p.R133R 0.39 TCGA-A6-6653-01 3 48510906 48510906 G A SHISA5 Missense_Mutation p.P166L 0.42 deleterious(0) probably_damaging(0.977) TCGA-A6-6653-01 3 48600283 48600283 G A UCN2 Missense_Mutation p.A92V 0.38 tolerated(0.09) possibly_damaging(0.787) TCGA-A6-6653-01 3 49162184 49162184 G A LAMB2 Missense_Mutation p.A1020V 0.38 tolerated(0.18) possibly_damaging(0.45) TCGA-A6-6653-01 3 49211713 49211714 - C KLHDC8B Frame_Shift_Ins p.Q142Pfs*8 0.39 TCGA-A6-6653-01 3 49700419 49700419 C T BSN Nonsense_Mutation p.R3610* 0.32 TCGA-A6-6653-01 3 49897010 49897033 CCATCAGTGGCTGGAGTGATGCTT - CAMKV In_Frame_Del p.I410_S417del 0.17 TCGA-A6-6653-01 3 50369095 50369095 G A RASSF1 Missense_Mutation p.R223C 0.37 deleterious(0.02) possibly_damaging(0.832) TCGA-A6-6653-01 3 50391269 50391269 A C CYB561D2 3'UTR 0.91 TCGA-A6-6653-01 3 51430559 51430559 C T RBM15B Missense_Mutation p.R577C 0.14 deleterious(0.03) possibly_damaging(0.895) TCGA-A6-6653-01 3 51451440 51451440 C T VPRBP Missense_Mutation p.V870M 0.37 deleterious(0) possibly_damaging(0.872) TCGA-A6-6653-01 3 51749441 51749441 C T GRM2 Missense_Mutation p.T551I 0.29 deleterious(0) benign(0.323) TCGA-A6-6653-01 3 53707080 53707080 T C CACNA1D Intron 0.27 TCGA-A6-6653-01 3 56468715 56468715 A G ERC2 Silent p.A107A 0.33 TCGA-A6-6653-01 3 56789110 56789110 C T ARHGEF3 Missense_Mutation p.A124T 0.38 tolerated(0.27) benign(0.005) TCGA-A6-6653-01 3 57132324 57132324 G A IL17RD Silent p.S469S 0.50 TCGA-A6-6653-01 3 58116577 58116577 G A FLNB Silent p.T1444T 0.35 TCGA-A6-6653-01 3 58121817 58121817 G - FLNB Frame_Shift_Del p.G1627Vfs*33 0.43 TCGA-A6-6653-01 3 58555590 58555590 C T FAM107A Intron 0.18 TCGA-A6-6653-01 3 65479199 65479199 C T MAGI1 Missense_Mutation p.G180S 0.53 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 3 68593789 68593789 C T FAM19A1 3'UTR 0.30 TCGA-A6-6653-01 3 69104477 69104477 A - UBA3 3'UTR 0.32 TCGA-A6-6653-01 3 75471817 75471817 T C FAM86DP RNA 0.38 TCGA-A6-6653-01 3 75476776 75476776 G - FAM86DP RNA 0.49 TCGA-A6-6653-01 3 8983443 8983445 AGG - RAD18 In_Frame_Del p.P104del 0.31 TCGA-A6-6653-01 3 9166562 9166562 T G SRGAP3 Missense_Mutation p.E36A 0.40 deleterious(0) probably_damaging(0.995) TCGA-A6-6653-01 3 93611889 93611889 G A PROS1 Missense_Mutation p.A348V 0.41 deleterious(0.01) possibly_damaging(0.819) TCGA-A6-6653-01 3 93779732 93779732 A - DHFRL1 3'UTR 0.44 TCGA-A6-6653-01 3 97467557 97467557 G A EPHA6 3'UTR 0.50 TCGA-A6-6653-01 4 100463221 100463221 C T C4orf17 Silent p.N345N 0.37 TCGA-A6-6653-01 4 100532498 100532498 G A MTTP Missense_Mutation p.R626H 0.41 tolerated(0.27) benign(0.001) TCGA-A6-6653-01 4 104640596 104640596 C A TACR3 Silent p.V79V 0.14 TCGA-A6-6653-01 4 1165670 1165670 G A SPON2 Missense_Mutation p.R64C 0.26 deleterious(0) probably_damaging(0.986) TCGA-A6-6653-01 4 1245369 1245369 C - CTBP1 5'Flank 0.41 TCGA-A6-6653-01 4 126372321 126372321 G T FAT4 Missense_Mutation p.A3384S 0.39 possibly_damaging(0.823) TCGA-A6-6653-01 4 126412710 126412710 C A FAT4 Silent p.G4911G 0.52 TCGA-A6-6653-01 4 134073665 134073665 G A PCDH10 Silent p.V790V 0.34 TCGA-A6-6653-01 4 1388457 1388457 C T CRIPAK Missense_Mutation p.A53V 0.29 tolerated(0.36) possibly_damaging(0.866) TCGA-A6-6653-01 4 140454251 140454251 T - SETD7 Intron 0.33 TCGA-A6-6653-01 4 141264737 141264737 C G RP11-425I13.3 Intron 0.41 TCGA-A6-6653-01 4 141832231 141832231 T - RNF150 Intron 0.38 TCGA-A6-6653-01 4 143226690 143226690 G A INPP4B Nonsense_Mutation p.R142* 0.33 TCGA-A6-6653-01 4 148441086 148441086 G T EDNRA Silent p.S168S 0.31 TCGA-A6-6653-01 4 148944471 148944471 C - ARHGAP10 Frame_Shift_Del p.P593Qfs*55 0.39 TCGA-A6-6653-01 4 151509256 151509256 C T LRBA Missense_Mutation p.E2103K 0.44 deleterious(0) possibly_damaging(0.82) TCGA-A6-6653-01 4 155241811 155241811 A G DCHS2 Silent p.I1125I 0.43 TCGA-A6-6653-01 4 156723585 156723585 C A GUCY1B3 Missense_Mutation p.L423I 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-A6-6653-01 4 159154063 159154063 T - TMEM144 Frame_Shift_Del p.L143Cfs*19 0.28 TCGA-A6-6653-01 4 16008207 16008207 T A PROM1 Missense_Mutation p.T470S 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-A6-6653-01 4 160189256 160189256 T C RAPGEF2 5'UTR 0.53 TCGA-A6-6653-01 4 165961393 165961393 C T TRIM60 Missense_Mutation p.R57C 0.38 deleterious(0) possibly_damaging(0.871) TCGA-A6-6653-01 4 169923065 169923065 A - CBR4 Intron 0.19 TCGA-A6-6653-01 4 170428880 170428880 T - NEK1 Frame_Shift_Del p.I633Sfs*4 0.38 TCGA-A6-6653-01 4 170498088 170498088 T - NEK1 Frame_Shift_Del p.K337Nfs*13 0.33 TCGA-A6-6653-01 4 170912875 170912875 C T MFAP3L Missense_Mutation p.R295Q 0.45 tolerated(0.05) possibly_damaging(0.696) TCGA-A6-6653-01 4 17524585 17524585 T C CLRN2 Missense_Mutation p.F118L 0.49 deleterious(0.05) probably_damaging(0.992) TCGA-A6-6653-01 4 17805455 17805455 C T DCAF16 Missense_Mutation p.V104I 0.35 tolerated_low_confidence(0.1) benign(0.009) TCGA-A6-6653-01 4 1805487 1805487 C T FGFR3 Intron 0.39 TCGA-A6-6653-01 4 184114755 184114755 A G WWC2 Silent p.L45L 0.10 TCGA-A6-6653-01 4 187195459 187195459 C T F11 Intron 0.46 TCGA-A6-6653-01 4 1988044 1988044 G - NELFA Frame_Shift_Del p.I252Sfs*14 0.46 TCGA-A6-6653-01 4 2831433 2831433 G A SH3BP2 Missense_Mutation p.C324Y 0.30 tolerated_low_confidence(0.12) benign(0.002) TCGA-A6-6653-01 4 30723479 30723479 G A PCDH7 Silent p.S145S 0.41 TCGA-A6-6653-01 4 30725790 30725790 A - PCDH7 Frame_Shift_Del p.D918Ifs*146 0.31 TCGA-A6-6653-01 4 3214292 3214292 G T HTT Silent p.G2210G 0.35 TCGA-A6-6653-01 4 3418813 3418813 A - RGS12 Frame_Shift_Del p.K869Sfs*2 0.48 TCGA-A6-6653-01 4 3449740 3449740 G A HGFAC Silent p.A538A 0.35 TCGA-A6-6653-01 4 3494583 3494583 G A DOK7 Silent p.S290S 0.52 TCGA-A6-6653-01 4 37448900 37448900 C T KIAA1239 3'UTR 0.30 TCGA-A6-6653-01 4 37846139 37846139 A G PGM2 Missense_Mutation p.K292E 0.35 deleterious(0.05) benign(0.021) TCGA-A6-6653-01 4 39482852 39482852 C T LIAS 3'Flank 0.43 TCGA-A6-6653-01 4 40752902 40752902 G T NSUN7 Missense_Mutation p.Q64H 0.41 deleterious(0) benign(0.308) TCGA-A6-6653-01 4 40800865 40800865 T C NSUN7 Silent p.A448A 0.30 TCGA-A6-6653-01 4 42119469 42119469 G T BEND4 3'UTR 0.35 TCGA-A6-6653-01 4 46099362 46099362 C A GABRG1 Missense_Mutation p.D37Y 0.36 deleterious(0.01) benign(0.358) TCGA-A6-6653-01 4 47939481 47939481 G A CNGA1 Missense_Mutation p.R413C 0.24 deleterious(0.03) probably_damaging(0.988) TCGA-A6-6653-01 4 48027235 48027236 AC - NIPAL1 Frame_Shift_Del p.Y66* 0.26 TCGA-A6-6653-01 4 52869395 52869395 T - LRRC66 Frame_Shift_Del p.K220Nfs*5 0.37 TCGA-A6-6653-01 4 53492294 53492294 T - USP46 Frame_Shift_Del p.N151Mfs*4 0.36 TCGA-A6-6653-01 4 57221442 57221442 T C AASDH Missense_Mutation p.K337E 0.36 deleterious(0.01) benign(0.41) TCGA-A6-6653-01 4 57318143 57318143 A G PAICS Missense_Mutation p.I300V 0.38 benign(0.005) TCGA-A6-6653-01 4 57887134 57887134 G A POLR2B Missense_Mutation p.R798H 0.54 deleterious(0) possibly_damaging(0.451) TCGA-A6-6653-01 4 62812837 62812837 C G LPHN3 Missense_Mutation p.I807M 0.32 deleterious(0) possibly_damaging(0.477) TCGA-A6-6653-01 4 6330987 6330987 A G PPP2R2C Splice_Site p.X351_splice 0.45 TCGA-A6-6653-01 4 70066059 70066059 G T UGT2B11 3'UTR 0.41 TCGA-A6-6653-01 4 70079999 70079999 C T UGT2B11 Missense_Mutation p.V148I 0.39 tolerated(0.46) benign(0.016) TCGA-A6-6653-01 4 71068610 71068610 T C ODAM Silent p.I262I 0.11 TCGA-A6-6653-01 4 728563 728563 A G PCGF3 Intron 0.44 TCGA-A6-6653-01 4 73944467 73944467 G A ANKRD17 Missense_Mutation p.R2434C 0.42 benign(0.155) TCGA-A6-6653-01 4 74007986 74007986 T A ANKRD17 Missense_Mutation p.L734F 0.07 benign(0.001) TCGA-A6-6653-01 4 74864413 74864413 G A CXCL5 5'UTR 0.33 TCGA-A6-6653-01 4 75041093 75041093 G A MTHFD2L Missense_Mutation p.G142S 0.44 deleterious(0) probably_damaging(0.966) TCGA-A6-6653-01 4 780255 780255 C A CPLX1 3'UTR 0.39 TCGA-A6-6653-01 4 79403070 79403070 C T FRAS1 Silent p.Y2852Y 0.44 TCGA-A6-6653-01 4 79518541 79518541 C T ANXA3 Missense_Mutation p.H235Y 0.35 tolerated(0.06) probably_damaging(0.999) TCGA-A6-6653-01 4 843473 843473 C T GAK Silent p.R1308R 0.41 TCGA-A6-6653-01 4 85656200 85656200 T C WDFY3 Missense_Mutation p.Q2330R 0.11 tolerated(0.35) benign(0.212) TCGA-A6-6653-01 4 85657414 85657414 C T WDFY3 Missense_Mutation p.R2275H 0.37 deleterious(0.01) possibly_damaging(0.635) TCGA-A6-6653-01 4 87706487 87706487 C T PTPN13 Silent p.N2079N 0.43 TCGA-A6-6653-01 4 88415209 88415209 T C SPARCL1 Missense_Mutation p.D248G 0.41 tolerated(0.18) benign(0.021) TCGA-A6-6653-01 4 89575227 89575227 C T HERC3 Silent p.R240R 0.35 TCGA-A6-6653-01 4 89670993 89670993 G A FAM13A Nonsense_Mutation p.R670* 0.39 TCGA-A6-6653-01 4 94436498 94436498 G A GRID2 Missense_Mutation p.R710Q 0.27 tolerated(0.1) benign(0.281) TCGA-A6-6653-01 4 9784906 9784906 T C DRD5 Missense_Mutation p.V418A 0.32 tolerated(0.2) benign(0.033) TCGA-A6-6653-01 4 9785349 9785349 G C DRD5 3'UTR 0.22 TCGA-A6-6653-01 5 109963537 109963537 A G TMEM232 Silent p.H182H 0.34 TCGA-A6-6653-01 5 111091613 111091613 A G NREP Intron 0.58 TCGA-A6-6653-01 5 111504763 111504763 C T EPB41L4A Silent p.S593S 0.43 TCGA-A6-6653-01 5 1201813 1201813 G A SLC6A19 Silent p.P16P 0.39 TCGA-A6-6653-01 5 122337660 122337660 C T SNX24 Silent p.L135L 0.45 TCGA-A6-6653-01 5 134002623 134002623 C - SEC24A Frame_Shift_Del p.L227* 0.38 TCGA-A6-6653-01 5 135369458 135369458 C T TGFBI Silent p.N47N 0.25 TCGA-A6-6653-01 5 136324304 136324304 G T SPOCK1 Nonsense_Mutation p.C245* 0.34 TCGA-A6-6653-01 5 13736033 13736033 G A DNAH5 Missense_Mutation p.R3822W 0.31 possibly_damaging(0.689) TCGA-A6-6653-01 5 137486432 137486432 A G BRD8 Splice_Site p.X1040_splice 0.14 TCGA-A6-6653-01 5 137502362 137502362 G T BRD8 Missense_Mutation p.P281H 0.26 deleterious(0) possibly_damaging(0.838) TCGA-A6-6653-01 5 137521394 137521394 C T KIF20A Missense_Mutation p.T707I 0.29 tolerated(0.06) benign(0.128) TCGA-A6-6653-01 5 13920646 13920646 A G DNAH5 Silent p.P247P 0.40 TCGA-A6-6653-01 5 139930104 139930104 T - SRA1 3'UTR 0.35 TCGA-A6-6653-01 5 140011930 140011930 C T CD14 Missense_Mutation p.M213I 0.44 tolerated(0.52) benign(0) TCGA-A6-6653-01 5 140186895 140186895 C T PCDHA4 Silent p.H41H 0.22 TCGA-A6-6653-01 5 140215528 140215528 G A PCDHA7 Silent p.L520L 0.39 TCGA-A6-6653-01 5 140223158 140223158 C T PCDHA8 Missense_Mutation p.S751L 0.31 deleterious_low_confidence(0.02) benign(0.15) TCGA-A6-6653-01 5 140255189 140255189 C T PCDHA12 Silent p.F44F 0.28 TCGA-A6-6653-01 5 140432459 140432459 G A PCDHB1 Silent p.A468A 0.48 TCGA-A6-6653-01 5 140557803 140557803 G A PCDHB8 Missense_Mutation p.R63Q 0.35 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-A6-6653-01 5 140683059 140683059 C T SLC25A2 Missense_Mutation p.C125Y 0.47 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 5 140712131 140712131 G A PCDHGA1 Missense_Mutation p.R627H 0.52 deleterious_low_confidence(0.01) benign(0.344) TCGA-A6-6653-01 5 140730929 140730929 C T PCDHGB1 Nonsense_Mutation p.R368* 0.30 TCGA-A6-6653-01 5 141052617 141052617 G T ARAP3 Silent p.T352T 0.36 TCGA-A6-6653-01 5 145719481 145719481 C T POU4F3 Missense_Mutation p.P164L 0.53 tolerated(0.13) benign(0.026) TCGA-A6-6653-01 5 146070771 146070771 G A PPP2R2B Missense_Mutation p.R126C 0.39 deleterious(0) probably_damaging(0.994) TCGA-A6-6653-01 5 149427256 149427256 G A HMGXB3 Missense_Mutation p.S1007N 0.41 tolerated(0.07) benign(0.24) TCGA-A6-6653-01 5 150029171 150029171 C A SYNPO Missense_Mutation p.A689E 0.44 deleterious(0.04) possibly_damaging(0.703) TCGA-A6-6653-01 5 150858933 150858933 G A SLC36A1 Missense_Mutation p.A348T 0.19 tolerated(0.11) benign(0.273) TCGA-A6-6653-01 5 153144135 153144135 G T GRIA1 Missense_Mutation p.K665N 0.11 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 5 157002 157002 G A PLEKHG4B Silent p.A465A 0.25 TCGA-A6-6653-01 5 158524103 158524103 T C EBF1 Missense_Mutation p.Q57R 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-A6-6653-01 5 159707633 159707633 C T CCNJL Missense_Mutation p.R60Q 0.39 deleterious(0.05) probably_damaging(0.932) TCGA-A6-6653-01 5 159996613 159996613 G A ATP10B Silent p.C1276C 0.31 TCGA-A6-6653-01 5 16701376 16701376 G A MYO10 Missense_Mutation p.T1043I 0.34 tolerated_low_confidence(0.19) benign(0.047) TCGA-A6-6653-01 5 169724806 169724806 A G LCP2 5'UTR 0.56 TCGA-A6-6653-01 5 171305076 171305076 C T FBXW11 Missense_Mutation p.V283I 0.15 deleterious(0.01) possibly_damaging(0.783) TCGA-A6-6653-01 5 171534843 171534843 C T STK10 Silent p.V178V 0.36 TCGA-A6-6653-01 5 174869376 174869376 T C DRD1 Missense_Mutation p.T243A 0.21 tolerated(0.19) benign(0.002) TCGA-A6-6653-01 5 176305058 176305058 C T UNC5A Missense_Mutation p.P600L 0.39 deleterious(0) probably_damaging(0.946) TCGA-A6-6653-01 5 176799122 176799122 G A RGS14 3'UTR 0.39 TCGA-A6-6653-01 5 176930225 176930225 T C DOK3 3'Flank 0.34 TCGA-A6-6653-01 5 178359695 178359695 A G ZFP2 Missense_Mutation p.T461A 0.33 deleterious(0.03) possibly_damaging(0.897) TCGA-A6-6653-01 5 178369724 178369724 G A ZNF454 5'UTR 0.46 TCGA-A6-6653-01 5 178410030 178410030 G A GRM6 Missense_Mutation p.R773C 0.45 deleterious(0) probably_damaging(0.945) TCGA-A6-6653-01 5 178418554 178418555 - C GRM6 Frame_Shift_Ins p.V243Gfs*40 0.35 TCGA-A6-6653-01 5 178489053 178489053 A G ZNF354C 5'UTR 0.46 TCGA-A6-6653-01 5 179291130 179291130 T - TBC1D9B Splice_Site p.X1025_splice 0.44 TCGA-A6-6653-01 5 179292935 179292935 T C TBC1D9B Intron 0.32 TCGA-A6-6653-01 5 179442338 179442338 G A RNF130 Intron 0.34 TCGA-A6-6653-01 5 179467587 179467590 TGTT - RNF130 Frame_Shift_Del p.K102Sfs*28 0.40 TCGA-A6-6653-01 5 180219830 180219830 C T MGAT1 Missense_Mutation p.A48T 0.36 benign(0.005) TCGA-A6-6653-01 5 180326232 180326234 CTC - BTNL8 5'UTR 0.51 TCGA-A6-6653-01 5 180374580 180374580 T - BTNL8 Frame_Shift_Del p.F249Lfs*6 0.49 TCGA-A6-6653-01 5 180668577 180668579 GAG - GNB2L1 In_Frame_Del p.S115del 0.26 TCGA-A6-6653-01 5 24488007 24488007 C T CDH10 Missense_Mutation p.R711Q 0.36 tolerated(0.28) probably_damaging(0.968) TCGA-A6-6653-01 5 31317786 31317786 C T CDH6 Missense_Mutation p.T546M 0.39 deleterious(0) probably_damaging(0.95) TCGA-A6-6653-01 5 32087988 32087988 C G PDZD2 Silent p.G1478G 0.42 TCGA-A6-6653-01 5 33892100 33892100 G A ADAMTS12 5'UTR 0.24 TCGA-A6-6653-01 5 34908676 34908679 ATTT - RAD1 3'UTR 0.39 TCGA-A6-6653-01 5 35793297 35793297 G A SPEF2 Missense_Mutation p.E1531K 0.38 deleterious(0) benign(0.27) TCGA-A6-6653-01 5 35857007 35857007 C T IL7R 5'UTR 0.48 TCGA-A6-6653-01 5 3600751 3600751 G A IRX1 Silent p.S447S 0.38 TCGA-A6-6653-01 5 37181086 37181086 C A C5orf42 Missense_Mutation p.G1815W 0.56 deleterious(0.02) possibly_damaging(0.789) TCGA-A6-6653-01 5 41195997 41195997 T G C6 Missense_Mutation p.N162H 0.40 tolerated(0.07) possibly_damaging(0.877) TCGA-A6-6653-01 5 43412362 43412362 G A CCL28 Silent p.A19A 0.26 TCGA-A6-6653-01 5 56557066 56557066 T C GPBP1 Missense_Mutation p.L414S 0.33 deleterious(0) probably_damaging(0.984) TCGA-A6-6653-01 5 56778486 56778486 T C ACTBL2 Missense_Mutation p.M17V 0.31 tolerated_low_confidence(0.08) benign(0) TCGA-A6-6653-01 5 66478940 66478940 G T CD180 Missense_Mutation p.N577K 0.49 deleterious(0.03) probably_damaging(1) TCGA-A6-6653-01 5 68423854 68423856 ATC - SLC30A5 In_Frame_Del p.S675del 0.43 TCGA-A6-6653-01 5 68573004 68573004 A - CDK7 3'UTR 0.33 TCGA-A6-6653-01 5 7396598 7396598 C T ADCY2 Silent p.A63A 0.49 TCGA-A6-6653-01 5 76932996 76932996 C T OTP Missense_Mutation p.V33M 0.52 deleterious_low_confidence(0.04) possibly_damaging(0.475) TCGA-A6-6653-01 5 82850799 82850799 T A VCAN Missense_Mutation p.I3226K 0.45 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 5 96011269 96011269 G A CAST Silent p.S34S 0.08 TCGA-A6-6653-01 6 106992558 106992558 C T AIM1 Nonsense_Mutation p.R1310* 0.43 TCGA-A6-6653-01 6 108492721 108492721 G A NR2E1 Missense_Mutation p.G29R 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-A6-6653-01 6 109767002 109767004 TCT - MICAL1 In_Frame_Del p.E881del 0.36 TCGA-A6-6653-01 6 112025268 112025268 G A FYN Nonsense_Mutation p.R161* 0.44 TCGA-A6-6653-01 6 112574988 112574988 A G LAMA4 Intron 0.43 TCGA-A6-6653-01 6 116818187 116818187 T A TRAPPC3L Missense_Mutation p.D159V 0.39 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 6 11766527 11766527 C T ADTRP Missense_Mutation p.V142M 0.46 tolerated(0.2) benign(0.038) TCGA-A6-6653-01 6 129722391 129722391 G A LAMA2 Missense_Mutation p.S1823N 0.53 tolerated(0.17) benign(0.005) TCGA-A6-6653-01 6 135360902 135360902 C T HBS1L Missense_Mutation p.R80H 0.41 deleterious(0.02) benign(0.02) TCGA-A6-6653-01 6 136512843 136512843 C T PDE7B Silent p.L406L 0.46 TCGA-A6-6653-01 6 136681884 136681884 C T MAP7 Missense_Mutation p.R607Q 0.36 deleterious(0) unknown(0) TCGA-A6-6653-01 6 137015387 137015387 C T MAP3K5 Missense_Mutation p.E382K 0.50 tolerated(0.92) benign(0.342) TCGA-A6-6653-01 6 137815117 137815117 G A OLIG3 Missense_Mutation p.A64V 0.50 tolerated(0.11) benign(0.013) TCGA-A6-6653-01 6 137815417 137815417 C T OLIG3 5'UTR 0.23 TCGA-A6-6653-01 6 139488245 139488245 G A HECA Missense_Mutation p.V366M 0.46 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 6 143091853 143091853 G A HIVEP2 Silent p.H1341H 0.44 TCGA-A6-6653-01 6 143772168 143772168 T C PEX3 5'UTR 0.27 TCGA-A6-6653-01 6 146207735 146207735 T C SHPRH 3'UTR 0.43 TCGA-A6-6653-01 6 147109576 147109576 G A ADGB Missense_Mutation p.G1456D 0.41 tolerated(0.51) benign(0.001) TCGA-A6-6653-01 6 151672404 151672404 G A AKAP12 Missense_Mutation p.A960T 0.25 tolerated(0.21) benign(0.43) TCGA-A6-6653-01 6 154727548 154727548 C T CNKSR3 Silent p.S536S 0.36 TCGA-A6-6653-01 6 157522486 157522486 G A ARID1B Silent p.T1586T 0.15 TCGA-A6-6653-01 6 158834141 158834141 G A TULP4 Silent p.T99T 0.39 TCGA-A6-6653-01 6 161016491 161016491 T C LPA Missense_Mutation p.R1122G 0.33 deleterious(0.04) probably_damaging(0.978) TCGA-A6-6653-01 6 167754236 167754236 A T TTLL2 Missense_Mutation p.E283V 0.42 deleterious(0) probably_damaging(0.993) TCGA-A6-6653-01 6 168276166 168276166 C T MLLT4 Missense_Mutation p.P244S 0.45 deleterious(0.05) probably_damaging(0.941) TCGA-A6-6653-01 6 168352796 168352796 G A MLLT4 Missense_Mutation p.E1581K 0.49 deleterious_low_confidence(0.02) benign(0.284) TCGA-A6-6653-01 6 168709575 168709575 G A DACT2 Silent p.L288L 0.47 TCGA-A6-6653-01 6 17852253 17852253 A G KIF13A Missense_Mutation p.V172A 0.10 deleterious(0) possibly_damaging(0.709) TCGA-A6-6653-01 6 18121637 18121637 C A NHLRC1 3'UTR 0.21 TCGA-A6-6653-01 6 22570212 22570212 G A HDGFL1 Silent p.K136K 0.34 TCGA-A6-6653-01 6 24429243 24429243 G A GPLD1 3'UTR 0.40 TCGA-A6-6653-01 6 25652603 25652603 G A SCGN 5'UTR 0.48 TCGA-A6-6653-01 6 26197363 26197363 G A HIST1H3D Missense_Mutation p.P39L 0.36 deleterious_low_confidence(0.01) benign(0.011) TCGA-A6-6653-01 6 26428135 26428135 T G BTN2A3P RNA 0.37 TCGA-A6-6653-01 6 28891383 28891383 G A TRIM27 Silent p.C9C 0.57 TCGA-A6-6653-01 6 30514011 30514011 C T GNL1 Silent p.E554E 0.52 TCGA-A6-6653-01 6 30630725 30630725 C T DHX16 Missense_Mutation p.R464Q 0.38 deleterious(0) unknown(0) TCGA-A6-6653-01 6 30652419 30652419 C T PPP1R18 Silent p.G459G 0.20 TCGA-A6-6653-01 6 30954514 30954514 G A MUC21 Missense_Mutation p.V188M 0.41 tolerated(0.06) unknown(0) TCGA-A6-6653-01 6 31107550 31107550 C A PSORS1C1 Silent p.V100V 0.38 TCGA-A6-6653-01 6 31541462 31541462 G A LTA Missense_Mutation p.A204T 0.43 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 6 31692795 31692795 C T C6orf25 Missense_Mutation p.R224W 0.44 tolerated_low_confidence(0.08) benign(0.109) TCGA-A6-6653-01 6 31779056 31779056 C A HSPA1L Missense_Mutation p.G232W 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-6653-01 6 31785564 31785564 T - HSPA1A 3'UTR 0.27 TCGA-A6-6653-01 6 31827675 31827675 G A NEU1 Missense_Mutation p.R357W 0.27 tolerated(0.21) benign(0.004) TCGA-A6-6653-01 6 31864394 31864394 C T EHMT2 Missense_Mutation p.R106Q 0.50 tolerated_low_confidence(0.08) probably_damaging(0.921) TCGA-A6-6653-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.38 TCGA-A6-6653-01 6 32097391 32097391 G A FKBPL Missense_Mutation p.A56V 0.38 tolerated_low_confidence(0.95) benign(0.008) TCGA-A6-6653-01 6 3225793 3225794 TC - TUBB2B Frame_Shift_Del p.D177Hfs*21 0.32 TCGA-A6-6653-01 6 33166198 33166198 G - RXRB Frame_Shift_Del p.P176Lfs*4 0.48 TCGA-A6-6653-01 6 33412220 33412220 G A SYNGAP1 Splice_Site p.X1137_splice 0.39 TCGA-A6-6653-01 6 348959 348959 G A DUSP22 Intron 0.26 TCGA-A6-6653-01 6 35289126 35289126 A C DEF6 Missense_Mutation p.E612A 0.38 tolerated_low_confidence(0.07) unknown(0) TCGA-A6-6653-01 6 35393636 35393636 G A PPARD Missense_Mutation p.R369Q 0.44 tolerated(0.32) benign(0) TCGA-A6-6653-01 6 35425714 35425715 - C FANCE Frame_Shift_Ins p.V311Sfs*2 0.38 TCGA-A6-6653-01 6 35858736 35858736 C T SRPK1 Silent p.E43E 0.10 TCGA-A6-6653-01 6 36287353 36287354 - A C6orf222 Frame_Shift_Ins p.Y568Lfs*24 0.30 TCGA-A6-6653-01 6 36995271 36995272 - G FGD2 Frame_Shift_Ins p.K560Qfs*14 0.45 TCGA-A6-6653-01 6 36995862 36995862 C T FGD2 Missense_Mutation p.R631C 0.44 deleterious(0.01) probably_damaging(0.961) TCGA-A6-6653-01 6 37250121 37250121 C T TBC1D22B Silent p.S194S 0.46 TCGA-A6-6653-01 6 37448813 37448813 A G CMTR1 3'UTR 0.34 TCGA-A6-6653-01 6 39874028 39874028 G A MOCS1 3'UTR 0.21 TCGA-A6-6653-01 6 39880691 39880691 C T MOCS1 Missense_Mutation p.R272Q 0.51 tolerated(0.32) benign(0.022) TCGA-A6-6653-01 6 41029537 41029537 C T APOBEC2 Missense_Mutation p.A201V 0.30 tolerated(0.12) benign(0.034) TCGA-A6-6653-01 6 41162232 41162232 G A TREML2 Missense_Mutation p.S239L 0.10 tolerated(1) benign(0.009) TCGA-A6-6653-01 6 41318416 41318416 G T NCR2 Missense_Mutation p.W215C 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.712) TCGA-A6-6653-01 6 41555186 41555186 C - FOXP4 Frame_Shift_Del p.L272Sfs*95 0.51 TCGA-A6-6653-01 6 41753956 41753956 G - PRICKLE4 Frame_Shift_Del p.G226Dfs*53 0.44 TCGA-A6-6653-01 6 42893233 42893233 G - PTCRA Frame_Shift_Del p.G221Vfs*74 0.36 TCGA-A6-6653-01 6 43305267 43305267 T - ZNF318 Frame_Shift_Del p.T2157Qfs*54 0.35 TCGA-A6-6653-01 6 44275060 44275060 G A AARS2 Silent p.R322R 0.38 TCGA-A6-6653-01 6 47649862 47649862 T - GPR111 Frame_Shift_Del p.F524Lfs*25 0.35 TCGA-A6-6653-01 6 49426902 49426902 C T MUT Missense_Mutation p.R93H 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-6653-01 6 52367991 52367991 G T TRAM2 3'UTR 0.36 TCGA-A6-6653-01 6 71571705 71571705 A G SMAP1 3'UTR 0.40 TCGA-A6-6653-01 6 74111580 74111580 A C DDX43 Splice_Site p.X146_splice 0.29 TCGA-A6-6653-01 6 7590595 7590595 C T SNRNP48 Silent p.S35S 0.29 TCGA-A6-6653-01 6 87971495 87971495 A C ZNF292 Missense_Mutation p.K2716N 0.44 tolerated_low_confidence(0.16) benign(0.003) TCGA-A6-6653-01 6 90421887 90421887 T C MDN1 Missense_Mutation p.T2507A 0.37 benign(0.002) TCGA-A6-6653-01 7 100074938 100074938 G A TSC22D4 Silent p.L242L 0.42 TCGA-A6-6653-01 7 100179503 100179503 G A LRCH4 Silent p.D165D 0.35 TCGA-A6-6653-01 7 100804017 100804017 C - AP1S1 3'UTR 0.50 TCGA-A6-6653-01 7 102553504 102553504 C T LRRC17 5'UTR 0.48 TCGA-A6-6653-01 7 104773332 104773332 G A SRPK2 Missense_Mutation p.T553M 0.43 deleterious(0) probably_damaging(0.925) TCGA-A6-6653-01 7 105254601 105254601 G A ATXN7L1 Missense_Mutation p.A727V 0.39 tolerated(0.1) benign(0.001) TCGA-A6-6653-01 7 106545677 106545677 C T PIK3CG Missense_Mutation p.R1052W 0.43 deleterious(0) probably_damaging(0.996) TCGA-A6-6653-01 7 107423751 107423751 C T SLC26A3 Missense_Mutation p.V340I 0.49 tolerated(1) benign(0.006) TCGA-A6-6653-01 7 108143035 108143035 G A PNPLA8 Missense_Mutation p.L420F 0.42 deleterious(0) possibly_damaging(0.611) TCGA-A6-6653-01 7 110764147 110764147 T - LRRN3 Frame_Shift_Del p.S441Pfs*17 0.31 TCGA-A6-6653-01 7 114303519 114303520 - A FOXP2 Frame_Shift_Ins p.N622Kfs*13 0.36 TCGA-A6-6653-01 7 115891974 115891974 A G TES Missense_Mutation p.Y288C 0.11 deleterious(0.02) probably_damaging(0.957) TCGA-A6-6653-01 7 121719670 121719670 G T AASS Missense_Mutation p.Q793K 0.28 tolerated(0.74) benign(0.021) TCGA-A6-6653-01 7 123336647 123336647 T C WASL Silent p.T205T 0.34 TCGA-A6-6653-01 7 123594521 123594521 G A SPAM1 Silent p.P299P 0.32 TCGA-A6-6653-01 7 127231327 127231327 C T ARF5 Silent p.L173L 0.40 TCGA-A6-6653-01 7 128485077 128485077 G A FLNC Silent p.A1186A 0.50 TCGA-A6-6653-01 7 129767284 129767284 A - KLHDC10 Frame_Shift_Del p.N326Mfs*13 0.34 TCGA-A6-6653-01 7 134132115 134132115 T C AKR1B1 Missense_Mutation p.M254V 0.29 tolerated(0.24) benign(0.005) TCGA-A6-6653-01 7 135380201 135380201 T C SLC13A4 Missense_Mutation p.T311A 0.30 deleterious(0) probably_damaging(0.934) TCGA-A6-6653-01 7 137761277 137761277 G A AKR1D1 Missense_Mutation p.A5T 0.43 tolerated(0.15) benign(0.005) TCGA-A6-6653-01 7 138252338 138252338 G A TRIM24 Missense_Mutation p.R548Q 0.35 tolerated(0.06) benign(0.026) TCGA-A6-6653-01 7 138279285 138279285 A - SVOPL 3'Flank 0.32 TCGA-A6-6653-01 7 138564331 138564331 G A KIAA1549 Missense_Mutation p.T1433M 0.37 deleterious(0.03) benign(0.404) TCGA-A6-6653-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-A6-6653-01 7 140482927 140482927 G - BRAF Frame_Shift_Del p.P403Lfs*8 0.32 TCGA-A6-6653-01 7 141418982 141418982 G A WEE2 Silent p.R232R 0.30 TCGA-A6-6653-01 7 141747587 141747587 G A MGAM Missense_Mutation p.R834Q 0.30 deleterious(0) probably_damaging(0.977) TCGA-A6-6653-01 7 14217687 14217687 G A DGKB Missense_Mutation p.R739W 0.46 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 7 143510116 143510116 C T RP11-61L23.2 RNA 0.22 TCGA-A6-6653-01 7 148876650 148876650 C T ZNF398 Silent p.T562T 0.44 TCGA-A6-6653-01 7 148963759 148963759 C A ZNF783 Missense_Mutation p.L120M 0.32 deleterious(0.02) probably_damaging(0.974) TCGA-A6-6653-01 7 150029361 150029361 G - ZBED6CL 3'UTR 0.38 TCGA-A6-6653-01 7 150439591 150439591 C T GIMAP5 Missense_Mutation p.R122C 0.37 deleterious(0.04) possibly_damaging(0.726) TCGA-A6-6653-01 7 150835276 150835276 C A AGAP3 Silent p.P514P 0.46 TCGA-A6-6653-01 7 151057301 151057301 G A NUB1 Silent p.L280L 0.46 TCGA-A6-6653-01 7 1535892 1535892 G A INTS1 Silent p.F537F 0.26 TCGA-A6-6653-01 7 155559239 155559239 C T RBM33 Missense_Mutation p.R1089W 0.39 deleterious(0) unknown(0) TCGA-A6-6653-01 7 15601345 15601346 - T AGMO Frame_Shift_Ins p.A43Gfs*12 0.34 TCGA-A6-6653-01 7 17889992 17889992 A G SNX13 Missense_Mutation p.I348T 0.28 deleterious(0) probably_damaging(0.948) TCGA-A6-6653-01 7 1937922 1937922 C T MAD1L1 Missense_Mutation p.G638S 0.52 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 7 20687241 20687241 T C ABCB5 Silent p.A355A 0.38 TCGA-A6-6653-01 7 24324931 24324931 G A NPY Silent p.A24A 0.57 TCGA-A6-6653-01 7 24708126 24708126 C T MPP6 Missense_Mutation p.R321C 0.38 deleterious(0) probably_damaging(0.972) TCGA-A6-6653-01 7 25194783 25194783 G A C7orf31 Missense_Mutation p.H148Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 7 2577549 2577549 C G BRAT1 3'UTR 0.62 TCGA-A6-6653-01 7 27185135 27185135 A G HOXA6 3'UTR 0.44 TCGA-A6-6653-01 7 2752095 2752095 C T AMZ1 Silent p.P360P 0.41 TCGA-A6-6653-01 7 27872543 27872543 C T JAZF1 Missense_Mutation p.R203H 0.42 deleterious(0) possibly_damaging(0.747) TCGA-A6-6653-01 7 31135289 31135289 T C ADCYAP1R1 Intron 0.35 TCGA-A6-6653-01 7 33423411 33423411 C A BBS9 Silent p.P641P 0.36 TCGA-A6-6653-01 7 4050699 4050699 G A SDK1 Missense_Mutation p.A745T 0.45 deleterious(0) probably_damaging(0.995) TCGA-A6-6653-01 7 43918282 43918282 C T URGCP Silent p.A260A 0.45 TCGA-A6-6653-01 7 45145176 45145176 G A TBRG4 Missense_Mutation p.S200L 0.36 deleterious(0.05) benign(0.217) TCGA-A6-6653-01 7 4830445 4830445 C - AP5Z1 Frame_Shift_Del p.Q696Rfs*6 0.44 TCGA-A6-6653-01 7 48685184 48685184 C T ABCA13 3'UTR 0.38 TCGA-A6-6653-01 7 4950795 4950795 C T MMD2 Missense_Mutation p.V150I 0.52 deleterious(0.03) probably_damaging(0.964) TCGA-A6-6653-01 7 53104459 53104459 C T POM121L12 3'UTR 0.14 TCGA-A6-6653-01 7 5399080 5399080 C - TNRC18 Frame_Shift_Del p.R1595Gfs*18 0.37 TCGA-A6-6653-01 7 54823548 54823548 C T SEC61G Missense_Mutation p.A41T 0.38 tolerated(0.07) benign(0.019) TCGA-A6-6653-01 7 56088778 56088778 G A PSPH Missense_Mutation p.A43V 0.11 tolerated(0.07) benign(0.025) TCGA-A6-6653-01 7 56148779 56148779 C T PHKG1 Missense_Mutation p.V410M 0.41 tolerated(0.12) benign(0.134) TCGA-A6-6653-01 7 5644956 5644956 G A FSCN1 Missense_Mutation p.G445S 0.38 tolerated(0.95) benign(0.004) TCGA-A6-6653-01 7 64439294 64439294 T A ZNF117 Missense_Mutation p.I219F 0.40 deleterious(0) benign(0.296) TCGA-A6-6653-01 7 73450916 73450916 T A ELN Splice_Site p.X55_splice 0.50 TCGA-A6-6653-01 7 73668676 73668676 A G RFC2 Missense_Mutation p.V13A 0.34 tolerated_low_confidence(0.87) benign(0) TCGA-A6-6653-01 7 75191414 75191414 T C HIP1 Missense_Mutation p.N361D 0.69 tolerated(0.18) benign(0.012) TCGA-A6-6653-01 7 76024567 76024567 T C SRCRB4D Intron 0.38 TCGA-A6-6653-01 7 810217 810217 C T HEATR2 Silent p.T631T 0.46 TCGA-A6-6653-01 7 86415678 86415678 C T GRM3 Silent p.T190T 0.41 TCGA-A6-6653-01 7 899942 899942 G A SUN1 Missense_Mutation p.V568M 0.37 deleterious(0.04) possibly_damaging(0.736) TCGA-A6-6653-01 7 90896873 90896873 C T FZD1 3'UTR 0.41 TCGA-A6-6653-01 7 92131260 92131260 A G PEX1 Missense_Mutation p.L787P 0.46 deleterious(0) probably_damaging(0.984) TCGA-A6-6653-01 7 94298411 94298412 - A PEG10 3'UTR 0.30 TCGA-A6-6653-01 7 97846672 97846672 C T TECPR1 3'UTR 0.36 TCGA-A6-6653-01 7 99091213 99091213 C T ZNF394 Missense_Mutation p.R542Q 0.11 tolerated(0.33) benign(0.046) TCGA-A6-6653-01 7 99490069 99490069 C T TRIM4 Missense_Mutation p.R407H 0.37 tolerated(0.09) benign(0.002) TCGA-A6-6653-01 7 99802312 99802312 C T STAG3 Silent p.I955I 0.37 TCGA-A6-6653-01 8 100523466 100523466 T C VPS13B Silent p.S1478S 0.42 TCGA-A6-6653-01 8 100732747 100732747 C T VPS13B Missense_Mutation p.R2303W 0.43 deleterious(0) benign(0.378) TCGA-A6-6653-01 8 101154374 101154374 C T FBXO43 Silent p.S36S 0.28 TCGA-A6-6653-01 8 101585974 101585974 A - SNX31 3'UTR 0.39 TCGA-A6-6653-01 8 105459703 105459703 T C DPYS Missense_Mutation p.Q151R 0.40 tolerated(0.35) benign(0.001) TCGA-A6-6653-01 8 107726072 107726072 C A OXR1 Missense_Mutation p.F606L 0.41 deleterious(0) probably_damaging(0.998) TCGA-A6-6653-01 8 113529296 113529296 A G CSMD3 Missense_Mutation p.Y1575H 0.35 deleterious(0.05) probably_damaging(0.985) TCGA-A6-6653-01 8 11703219 11703219 T C CTSB Silent p.T291T 0.36 TCGA-A6-6653-01 8 124825078 124825078 A C FAM91A1 3'UTR 0.40 TCGA-A6-6653-01 8 13072082 13072082 T G DLC1 Intron 0.31 TCGA-A6-6653-01 8 131795942 131795942 C T ADCY8 Missense_Mutation p.R1088Q 0.48 deleterious(0.01) benign(0.019) TCGA-A6-6653-01 8 132988276 132988276 T - EFR3A Frame_Shift_Del p.F389Lfs*14 0.39 TCGA-A6-6653-01 8 133492451 133492452 AA - KCNQ3 Frame_Shift_Del p.L110Dfs*39 0.33 TCGA-A6-6653-01 8 139691918 139691918 G A COL22A1 Missense_Mutation p.A1005V 0.26 unknown(0) TCGA-A6-6653-01 8 140743229 140743229 C T TRAPPC9 3'UTR 0.30 TCGA-A6-6653-01 8 144358851 144358851 G A GLI4 Silent p.S336S 0.47 TCGA-A6-6653-01 8 144462869 144462869 A G RHPN1 Missense_Mutation p.T443A 0.40 tolerated(1) benign(0.002) TCGA-A6-6653-01 8 144662749 144662749 C T EEF1D Missense_Mutation p.R546Q 0.33 tolerated(0.07) benign(0.305) TCGA-A6-6653-01 8 144875220 144875220 C T SCRIB Missense_Mutation p.A1315T 0.30 benign(0.009) TCGA-A6-6653-01 8 144940383 144940383 C T EPPK1 Missense_Mutation p.G2347S 0.14 probably_damaging(0.961) TCGA-A6-6653-01 8 144994961 144994961 C T PLEC Missense_Mutation p.V3147I 0.43 benign(0.364) TCGA-A6-6653-01 8 145732305 145732306 - C GPT Frame_Shift_Ins p.E475Gfs*72 0.43 TCGA-A6-6653-01 8 146171571 146171571 G A ZNF16 Missense_Mutation p.R8C 0.38 deleterious_low_confidence(0.02) benign(0.057) TCGA-A6-6653-01 8 17933058 17933058 T C ASAH1 Silent p.S55S 0.36 TCGA-A6-6653-01 8 1857569 1857569 C T ARHGEF10 Silent p.G692G 0.15 TCGA-A6-6653-01 8 22273696 22273696 C T SLC39A14 Silent p.I350I 0.07 TCGA-A6-6653-01 8 23159605 23159605 G A LOXL2 Missense_Mutation p.R690C 0.36 deleterious(0) probably_damaging(0.992) TCGA-A6-6653-01 8 24346787 24346787 C A ADAM7 Missense_Mutation p.Q403K 0.45 deleterious(0) benign(0.031) TCGA-A6-6653-01 8 25257424 25257424 T A DOCK5 Intron 0.11 TCGA-A6-6653-01 8 26221272 26221272 T - PPP2R2A Frame_Shift_Del p.S292Pfs*10 0.33 TCGA-A6-6653-01 8 27297910 27297910 A G PTK2B Missense_Mutation p.Y664C 0.38 deleterious(0) benign(0.351) TCGA-A6-6653-01 8 30569579 30569580 - T GSR Frame_Shift_Ins p.V112Gfs*10 0.23 TCGA-A6-6653-01 8 3072026 3072026 G T CSMD1 Silent p.S1620S 0.39 TCGA-A6-6653-01 8 3216700 3216700 C A CSMD1 Missense_Mutation p.W1093L 0.21 probably_damaging(0.999) TCGA-A6-6653-01 8 32406221 32406221 G A NRG1 5'UTR 0.44 TCGA-A6-6653-01 8 32505869 32505874 AACAGA - NRG1 Intron 0.58 TCGA-A6-6653-01 8 38162193 38162193 G A WHSC1L1 Silent p.S841S 0.13 TCGA-A6-6653-01 8 43054695 43054696 - T HGSNAT Frame_Shift_Ins p.W633Lfs*34 0.32 TCGA-A6-6653-01 8 48701544 48701544 T - PRKDC Frame_Shift_Del p.M3608Cfs*44 0.38 TCGA-A6-6653-01 8 55372389 55372389 G A SOX17 Missense_Mutation p.R360H 0.25 deleterious(0.04) probably_damaging(0.991) TCGA-A6-6653-01 8 57080830 57080830 G A PLAG1 5'UTR 0.47 TCGA-A6-6653-01 8 6690412 6690412 G A GS1-24F4.2 5'Flank 0.20 TCGA-A6-6653-01 8 68070754 68070754 C T CSPP1 Missense_Mutation p.R767W 0.30 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 8 69020432 69020432 C A PREX2 Missense_Mutation p.P935H 0.35 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 8 73850079 73850079 G A KCNB2 Missense_Mutation p.S830N 0.36 tolerated_low_confidence(0.4) benign(0.003) TCGA-A6-6653-01 8 74706169 74706169 G A UBE2W 3'UTR 0.47 TCGA-A6-6653-01 8 77764366 77764366 T C ZFHX4 Missense_Mutation p.F1737L 0.37 benign(0.294) TCGA-A6-6653-01 8 87393817 87393817 C T WWP1 Missense_Mutation p.T98M 0.12 deleterious(0.01) probably_damaging(0.94) TCGA-A6-6653-01 8 87486447 87486447 G A RMDN1 3'UTR 0.48 TCGA-A6-6653-01 8 87878729 87878729 G A CNBD1 Silent p.P2P 0.07 TCGA-A6-6653-01 8 97156856 97156856 C T GDF6 Missense_Mutation p.A435T 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-A6-6653-01 8 99105503 99105503 G T C8orf47 Missense_Mutation p.G356V 0.11 tolerated(0.07) probably_damaging(0.988) TCGA-A6-6653-01 8 99718860 99718860 A G STK3 Silent p.D201D 0.29 TCGA-A6-6653-01 9 101706340 101706340 C T COL15A1 5'UTR 0.26 TCGA-A6-6653-01 9 101904983 101904983 A G TGFBR1 Missense_Mutation p.Q324R 0.33 tolerated(0.11) probably_damaging(0.947) TCGA-A6-6653-01 9 103204592 103204592 C - MSANTD3 Frame_Shift_Del p.P126Rfs*52 0.38 TCGA-A6-6653-01 9 105767790 105767792 AAG - CYLC2 In_Frame_Del p.K294del 0.17 TCGA-A6-6653-01 9 109686912 109686912 G A ZNF462 Missense_Mutation p.R240Q 0.32 benign(0.238) TCGA-A6-6653-01 9 112705650 112705650 A G PALM2 Missense_Mutation p.E394G 0.50 deleterious(0.05) benign(0.446) TCGA-A6-6653-01 9 116930881 116930881 G A COL27A1 Missense_Mutation p.R349H 0.38 unknown(0) TCGA-A6-6653-01 9 116994119 116994119 G - COL27A1 Frame_Shift_Del p.E848Sfs*4 0.39 TCGA-A6-6653-01 9 122075440 122075440 A T BRINP1 Missense_Mutation p.F65Y 0.14 tolerated(0.14) benign(0.007) TCGA-A6-6653-01 9 123215894 123215894 G A CDK5RAP2 Missense_Mutation p.T878M 0.37 tolerated(0.56) benign(0.002) TCGA-A6-6653-01 9 125141077 125141077 C - PTGS1 Frame_Shift_Del p.T128Pfs*17 0.30 TCGA-A6-6653-01 9 125611951 125611951 G A RC3H2 Silent p.N1177N 0.36 TCGA-A6-6653-01 9 125612077 125612077 C T RC3H2 Silent p.P1135P 0.46 TCGA-A6-6653-01 9 125673358 125673358 C T ZBTB6 Missense_Mutation p.G332R 0.30 deleterious(0) probably_damaging(0.999) TCGA-A6-6653-01 9 125681007 125681007 T C ZBTB26 Missense_Mutation p.T403A 0.37 tolerated_low_confidence(0.1) benign(0.004) TCGA-A6-6653-01 9 127245228 127245228 C T NR5A1 Missense_Mutation p.A399T 0.37 tolerated(0.2) benign(0.015) TCGA-A6-6653-01 9 127618161 127618161 C T WDR38 Missense_Mutation p.T110M 0.39 deleterious(0.02) benign(0.444) TCGA-A6-6653-01 9 130230076 130230076 G A LRSAM1 Missense_Mutation p.G196S 0.34 deleterious(0) probably_damaging(0.959) TCGA-A6-6653-01 9 130941353 130941353 T C CIZ1 Missense_Mutation p.Q378R 0.37 tolerated_low_confidence(0.19) possibly_damaging(0.901) TCGA-A6-6653-01 9 131117372 131117372 C - SLC27A4 Frame_Shift_Del p.L457Cfs*36 0.24 TCGA-A6-6653-01 9 131767655 131767655 C T NUP188 Missense_Mutation p.A1528V 0.56 tolerated(0.31) benign(0.008) TCGA-A6-6653-01 9 133779606 133779606 A G FIBCD1 Missense_Mutation p.Y411H 0.48 deleterious(0.01) probably_damaging(1) TCGA-A6-6653-01 9 134351880 134351880 G A PRRC2B Missense_Mutation p.R1455H 0.48 tolerated(0.06) benign(0.052) TCGA-A6-6653-01 9 135073412 135073412 G A NTNG2 Silent p.P91P 0.31 TCGA-A6-6653-01 9 136339150 136339150 C T SLC2A6 Missense_Mutation p.A330T 0.51 deleterious(0.01) probably_damaging(1) TCGA-A6-6653-01 9 137968703 137968703 G A OLFM1 Intron 0.40 TCGA-A6-6653-01 9 138378429 138378429 G T PPP1R26 Missense_Mutation p.E691D 0.38 deleterious(0.01) possibly_damaging(0.801) TCGA-A6-6653-01 9 139354291 139354291 C T SEC16A Silent p.P1703P 0.41 TCGA-A6-6653-01 9 139734849 139734849 C T RABL6 Nonsense_Mutation p.R690* 0.46 TCGA-A6-6653-01 9 139847375 139847375 C T LCN12 Missense_Mutation p.A49V 0.38 deleterious(0) probably_damaging(0.996) TCGA-A6-6653-01 9 139909252 139909252 C T ABCA2 Missense_Mutation p.R1298H 0.50 tolerated(0.25) benign(0.005) TCGA-A6-6653-01 9 139911088 139911088 C T ABCA2 Missense_Mutation p.R954H 0.46 tolerated(0.17) benign(0.008) TCGA-A6-6653-01 9 139943299 139943299 G A ENTPD2 Missense_Mutation p.A433V 0.44 deleterious(0.01) benign(0.182) TCGA-A6-6653-01 9 140033961 140033961 C T GRIN1 Missense_Mutation p.T8M 0.40 tolerated(0.05) benign(0.094) TCGA-A6-6653-01 9 140109336 140109336 C T NDOR1 Missense_Mutation p.R311C 0.28 deleterious(0) possibly_damaging(0.907) TCGA-A6-6653-01 9 140120681 140120681 A G C9orf169 3'UTR 0.41 TCGA-A6-6653-01 9 21967582 21967582 C T C9orf53 3'UTR 0.42 TCGA-A6-6653-01 9 25678544 25678545 AC - TUSC1 5'UTR 0.41 TCGA-A6-6653-01 9 32632973 32632973 C T TAF1L Missense_Mutation p.A869T 0.45 deleterious(0) probably_damaging(0.995) TCGA-A6-6653-01 9 34088426 34088426 C T DCAF12 Silent p.S428S 0.33 TCGA-A6-6653-01 9 34627966 34627966 C - ARID3C Frame_Shift_Del p.V16Wfs*119 0.48 TCGA-A6-6653-01 9 34996669 34996669 G A DNAJB5 Missense_Mutation p.E321K 0.28 tolerated(0.11) probably_damaging(0.995) TCGA-A6-6653-01 9 35609545 35609545 G A TESK1 Missense_Mutation p.D563N 0.60 deleterious(0) benign(0.123) TCGA-A6-6653-01 9 38398315 38398315 T C ALDH1B1 3'UTR 0.38 TCGA-A6-6653-01 9 4118589 4118589 G A GLIS3 Missense_Mutation p.R297C 0.37 tolerated(0.05) probably_damaging(0.997) TCGA-A6-6653-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.10 deleterious(0.01) possibly_damaging(0.573) TCGA-A6-6653-01 9 71851917 71851917 C T TJP2 Missense_Mutation p.R713W 0.44 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 9 72046299 72046299 T C APBA1 Missense_Mutation p.M820V 0.41 deleterious(0.01) possibly_damaging(0.457) TCGA-A6-6653-01 9 73028202 73028202 C T KLF9 Silent p.E26E 0.37 TCGA-A6-6653-01 9 74360287 74360287 G A TMEM2 Silent p.G227G 0.33 TCGA-A6-6653-01 9 75369738 75369738 A - TMC1 Frame_Shift_Del p.T228Pfs*42 0.34 TCGA-A6-6653-01 9 77343238 77343238 G A TRPM6 Missense_Mutation p.P1951L 0.42 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 9 78774000 78774000 G A PCSK5 Missense_Mutation p.R511H 0.59 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 9 82323587 82323587 C T TLE4 Silent p.N383N 0.44 TCGA-A6-6653-01 9 84607496 84607496 G A SPATA31D1 Missense_Mutation p.R704H 0.43 tolerated(0.58) possibly_damaging(0.81) TCGA-A6-6653-01 9 88601452 88601452 G A NAA35 Intron 0.54 TCGA-A6-6653-01 9 91609148 91609148 C - C9orf47 3'UTR 0.38 TCGA-A6-6653-01 9 95264793 95264793 A G ECM2 Splice_Site p.X535_splice 0.12 TCGA-A6-6653-01 9 95610242 95610242 T C ZNF484 Missense_Mutation p.E278G 0.49 deleterious(0.03) benign(0.007) TCGA-A6-6653-01 9 97333873 97333873 A G FBP2 Silent p.D146D 0.29 TCGA-A6-6653-01 9 97844923 97844923 C T C9orf3 Missense_Mutation p.R796C 0.32 deleterious(0) probably_damaging(0.932) TCGA-A6-6653-01 X 100240833 100240833 G A ARL13A Missense_Mutation p.R103H 0.48 deleterious(0) probably_damaging(0.994) TCGA-A6-6653-01 X 101581401 101581401 C T NXF2 Silent p.P618P 0.42 TCGA-A6-6653-01 X 101823280 101823280 G A NXF4 RNA 0.73 TCGA-A6-6653-01 X 105883845 105883845 C T CXorf57 Missense_Mutation p.R600W 0.77 tolerated(0.16) possibly_damaging(0.491) TCGA-A6-6653-01 X 107936001 107936001 C T COL4A5 Missense_Mutation p.R1518C 0.82 probably_damaging(0.996) TCGA-A6-6653-01 X 114357106 114357106 T - LRCH2 Frame_Shift_Del p.K721Sfs*22 0.23 TCGA-A6-6653-01 X 114468419 114468419 G A LRCH2 Silent p.N62N 0.83 TCGA-A6-6653-01 X 125685176 125685176 A G DCAF12L1 Splice_Site 0.57 TCGA-A6-6653-01 X 132160291 132160291 G A USP26 Missense_Mutation p.P653L 0.95 tolerated(1) benign(0) TCGA-A6-6653-01 X 1325345 1325345 A G CRLF2 Silent p.S110S 0.40 TCGA-A6-6653-01 X 133378875 133378875 T - CCDC160 Frame_Shift_Del p.F17Lfs*7 0.17 TCGA-A6-6653-01 X 133988178 133988178 G A FAM122C Missense_Mutation p.R167H 0.85 tolerated(1) benign(0.001) TCGA-A6-6653-01 X 134125273 134125273 C T SMIM10 Silent p.L50L 0.55 TCGA-A6-6653-01 X 13797937 13797937 C T GPM6B Missense_Mutation p.G233S 0.66 deleterious(0.01) probably_damaging(0.971) TCGA-A6-6653-01 X 138727732 138727732 T - MCF2 Frame_Shift_Del p.I76Sfs*46 0.45 TCGA-A6-6653-01 X 1413317 1413317 A G CSF2RA Missense_Mutation p.Y248C 0.38 tolerated(0.17) possibly_damaging(0.829) TCGA-A6-6653-01 X 146353893 146353893 C T MIR510 RNA 0.77 TCGA-A6-6653-01 X 148037698 148037698 G A AFF2 Missense_Mutation p.R708Q 0.85 deleterious(0) probably_damaging(0.994) TCGA-A6-6653-01 X 153039916 153039916 G A PLXNB3 Silent p.Q1263Q 0.74 TCGA-A6-6653-01 X 153416216 153416216 C T OPN1LW Silent p.S67S 0.84 TCGA-A6-6653-01 X 153695475 153695475 C T PLXNA3 Silent p.R1061R 0.76 TCGA-A6-6653-01 X 155239572 155239572 C T IL9R Missense_Mutation p.A355V 0.18 tolerated(0.14) benign(0.082) TCGA-A6-6653-01 X 1584787 1584787 C T P2RY8 Missense_Mutation p.R222H 0.50 tolerated(0.06) benign(0.179) TCGA-A6-6653-01 X 16672581 16672581 A G S100G Silent p.G63G 0.84 TCGA-A6-6653-01 X 24229632 24229632 T - ZFX 3'UTR 0.85 TCGA-A6-6653-01 X 36368204 36368204 T A CXorf30 Silent p.P331P 0.10 TCGA-A6-6653-01 X 49646963 49646963 A G USP27X 3'UTR 0.70 TCGA-A6-6653-01 X 55479539 55479539 C A MAGEH1 3'UTR 0.87 TCGA-A6-6653-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.62 TCGA-A6-6653-01 X 71416751 71416752 - T PIN4 Frame_Shift_Ins p.G104Wfs*3 0.12 TCGA-A6-6653-01 X 86919934 86919934 A C KLHL4 Missense_Mutation p.E699A 0.79 deleterious(0.01) possibly_damaging(0.686) TCGA-A6-6653-01 Y 15027841 15027841 G T DDX3Y Missense_Mutation p.G404V 0.45 deleterious(0) probably_damaging(1) TCGA-A6-6653-01 Y 6958128 6958128 A G TBL1Y Splice_Site p.X483_splice 0.79 TCGA-A6-6654-01 10 100190380 100190380 A G HPS1 Missense_Mutation p.L239P 0.08 deleterious(0) probably_damaging(0.913) TCGA-A6-6654-01 10 104592810 104592810 G A CYP17A1 Silent p.G303G 0.11 TCGA-A6-6654-01 10 105363372 105363372 C T SH3PXD2A Missense_Mutation p.E507K 0.39 tolerated(0.12) possibly_damaging(0.498) TCGA-A6-6654-01 10 108337154 108337154 G A SORCS1 Intron 0.16 TCGA-A6-6654-01 10 116032596 116032596 G A VWA2 Missense_Mutation p.V157I 0.15 tolerated(0.56) benign(0.008) TCGA-A6-6654-01 10 118187449 118187449 A G PNLIPRP3 5'UTR 0.26 TCGA-A6-6654-01 10 118969112 118969112 G A KCNK18 Missense_Mutation p.D153N 0.30 deleterious(0.03) possibly_damaging(0.751) TCGA-A6-6654-01 10 11911556 11911556 G A PROSER2 Silent p.P153P 0.22 TCGA-A6-6654-01 10 125514271 125514271 C T CPXM2 Missense_Mutation p.R642H 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-A6-6654-01 10 129913718 129913718 C - MKI67 Frame_Shift_Del p.K319Rfs*27 0.27 TCGA-A6-6654-01 10 24669937 24669937 G A KIAA1217 Missense_Mutation p.R165Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-A6-6654-01 10 32143116 32143116 T C ARHGAP12 Missense_Mutation p.N323D 0.10 tolerated(0.63) benign(0.004) TCGA-A6-6654-01 10 73039801 73039801 C T UNC5B Silent p.T101T 0.24 TCGA-A6-6654-01 10 99132856 99132856 G A RRP12 Missense_Mutation p.R710C 0.15 deleterious(0) benign(0.322) TCGA-A6-6654-01 11 102826222 102826222 G A MMP13 Missense_Mutation p.R41C 0.11 deleterious(0) possibly_damaging(0.51) TCGA-A6-6654-01 11 10797148 10797148 G A CTR9 Silent p.S1021S 0.12 TCGA-A6-6654-01 11 110007763 110007763 C T ZC3H12C Missense_Mutation p.R133C 0.29 tolerated(0.18) benign(0.002) TCGA-A6-6654-01 11 117280574 117280574 C T CEP164 Missense_Mutation p.T1330M 0.16 tolerated(0.27) benign(0.018) TCGA-A6-6654-01 11 118392771 118392771 C T KMT2A Missense_Mutation p.R3935C 0.17 probably_damaging(0.999) TCGA-A6-6654-01 11 49598140 49598140 G A RP11-707M1.1 RNA 0.15 TCGA-A6-6654-01 11 6340532 6340532 C T PRKCDBP Missense_Mutation p.R216Q 0.13 tolerated_low_confidence(0.1) probably_damaging(0.979) TCGA-A6-6654-01 11 63585349 63585349 C T C11orf84 Missense_Mutation p.P67L 0.18 tolerated(0.06) benign(0.043) TCGA-A6-6654-01 11 63670117 63670117 A G MARK2 Missense_Mutation p.T427A 0.18 tolerated(0.42) benign(0.041) TCGA-A6-6654-01 11 65315196 65315196 C T LTBP3 Missense_Mutation p.R648H 0.25 deleterious(0.02) possibly_damaging(0.568) TCGA-A6-6654-01 11 66082890 66082890 G A CD248 Missense_Mutation p.R537W 0.20 deleterious(0.01) benign(0.232) TCGA-A6-6654-01 11 6645151 6645151 C T DCHS1 Missense_Mutation p.V2586M 0.15 deleterious(0.04) probably_damaging(1) TCGA-A6-6654-01 11 67208963 67208963 G A CORO1B Silent p.I159I 0.15 TCGA-A6-6654-01 11 78780983 78780983 C T TENM4 Missense_Mutation p.V3M 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.608) TCGA-A6-6654-01 12 109309630 109309630 G A SVOP Missense_Mutation p.R392W 0.25 deleterious(0) probably_damaging(0.999) TCGA-A6-6654-01 12 109898513 109898513 G A KCTD10 Silent p.I105I 0.11 TCGA-A6-6654-01 12 132326328 132326328 G A MMP17 Missense_Mutation p.R289H 0.21 tolerated(0.27) benign(0.41) TCGA-A6-6654-01 12 132685743 132685743 G A GALNT9 Missense_Mutation p.R77C 0.38 tolerated(0.07) benign(0.026) TCGA-A6-6654-01 12 133197904 133197904 C G P2RX2 Missense_Mutation p.I323M 0.18 deleterious(0) probably_damaging(0.998) TCGA-A6-6654-01 12 1943618 1943618 G A LRTM2 Missense_Mutation p.G282R 0.33 tolerated(0.16) possibly_damaging(0.748) TCGA-A6-6654-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-A6-6654-01 12 26275969 26275969 A G BHLHE41 Missense_Mutation p.V160A 0.09 tolerated(0.91) benign(0.032) TCGA-A6-6654-01 12 41949529 41949529 C T PDZRN4 Silent p.D444D 0.21 TCGA-A6-6654-01 12 46243411 46243412 - AAT ARID2 In_Frame_Ins p.N589dup 0.30 TCGA-A6-6654-01 12 54966943 54966943 G A PDE1B Silent p.S249S 0.21 TCGA-A6-6654-01 12 56428501 56428501 C T IKZF4 Missense_Mutation p.R382C 0.16 deleterious(0) probably_damaging(0.998) TCGA-A6-6654-01 12 68551694 68551694 G A IFNG Missense_Mutation p.S122L 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-A6-6654-01 13 111927105 111927105 C A ARHGEF7 Missense_Mutation p.Q435K 0.12 tolerated(0.53) benign(0.071) TCGA-A6-6654-01 13 19751587 19751587 G A TUBA3C Missense_Mutation p.T179M 0.25 deleterious_low_confidence(0.03) probably_damaging(0.952) TCGA-A6-6654-01 13 70314625 70314625 T C KLHL1 Missense_Mutation p.N568S 0.20 tolerated(0.17) possibly_damaging(0.557) TCGA-A6-6654-01 13 92051457 92051457 C T GPC5 Missense_Mutation p.R53W 0.15 deleterious(0.05) probably_damaging(0.977) TCGA-A6-6654-01 14 105707654 105707654 C T BRF1 Missense_Mutation p.M214I 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-A6-6654-01 14 22004993 22004993 C T SALL2 Silent p.A21A 0.15 TCGA-A6-6654-01 14 65008065 65008065 G A HSPA2 Silent p.T166T 0.15 TCGA-A6-6654-01 14 76964690 76964690 G A ESRRB Silent p.P397P 0.19 TCGA-A6-6654-01 14 77242408 77242408 C T VASH1 Missense_Mutation p.T235M 0.25 deleterious(0) probably_damaging(0.997) TCGA-A6-6654-01 14 77297711 77297711 C T C14orf166B Missense_Mutation p.A128V 0.09 deleterious(0.01) possibly_damaging(0.839) TCGA-A6-6654-01 14 92609415 92609415 G A CPSF2 Missense_Mutation p.R306H 0.10 deleterious(0) probably_damaging(0.96) TCGA-A6-6654-01 15 101427829 101427829 C T ALDH1A3 Missense_Mutation p.S86L 0.16 deleterious(0) probably_damaging(1) TCGA-A6-6654-01 15 29397594 29397594 G A APBA2 Missense_Mutation p.A513T 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-A6-6654-01 15 41862327 41862327 G A TYRO3 Missense_Mutation p.R452Q 0.13 deleterious(0.05) benign(0.06) TCGA-A6-6654-01 15 52254643 52254643 G A LEO1 Missense_Mutation p.R288C 0.20 deleterious(0.01) possibly_damaging(0.634) TCGA-A6-6654-01 15 59146738 59146738 C T FAM63B Missense_Mutation p.R599C 0.27 deleterious(0) probably_damaging(0.973) TCGA-A6-6654-01 15 75706642 75706642 G A SIN3A Missense_Mutation p.A126V 0.10 deleterious(0) probably_damaging(0.999) TCGA-A6-6654-01 15 81589345 81589345 G T IL16 Missense_Mutation p.C660F 0.16 deleterious(0.01) benign(0.195) TCGA-A6-6654-01 15 82444463 82444463 G - EFTUD1 Frame_Shift_Del p.Q778Sfs*2 0.17 TCGA-A6-6654-01 15 82563947 82563947 G A FAM154B Silent p.S19S 0.19 TCGA-A6-6654-01 15 83335622 83335622 C T AP3B2 Missense_Mutation p.D577N 0.15 deleterious(0) probably_damaging(1) TCGA-A6-6654-01 16 11133649 11133649 G A CLEC16A Missense_Mutation p.V526M 0.16 tolerated(0.12) benign(0.181) TCGA-A6-6654-01 16 11855302 11855302 C T ZC3H7A Missense_Mutation p.R760H 0.11 deleterious(0) probably_damaging(0.999) TCGA-A6-6654-01 16 1399452 1399452 G A TSR3 Missense_Mutation p.R309W 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.855) TCGA-A6-6654-01 16 16205396 16205396 G A ABCC1 Silent p.T1012T 0.15 TCGA-A6-6654-01 16 57111924 57111924 G A NLRC5 Silent p.R1691R 0.12 TCGA-A6-6654-01 16 70995873 70995874 - T HYDIN Frame_Shift_Ins p.I1986Nfs*6 0.21 TCGA-A6-6654-01 16 71710373 71710373 C T PHLPP2 Missense_Mutation p.R483Q 0.11 deleterious(0.01) possibly_damaging(0.76) TCGA-A6-6654-01 16 75563943 75563943 C T CHST5 Missense_Mutation p.V114M 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-A6-6654-01 16 76569542 76569542 A G CNTNAP4 Silent p.P879P 0.10 TCGA-A6-6654-01 16 76569677 76569677 A C CNTNAP4 Silent p.S924S 0.18 TCGA-A6-6654-01 17 15989602 15989602 G A NCOR1 Silent p.I1057I 0.16 TCGA-A6-6654-01 17 2601865 2601865 G A CLUH Missense_Mutation p.A391V 0.18 deleterious(0.02) possibly_damaging(0.46) TCGA-A6-6654-01 17 27041916 27041916 C T RAB34 Missense_Mutation p.E260K 0.24 deleterious(0.03) probably_damaging(0.918) TCGA-A6-6654-01 17 36720472 36720472 G A SRCIN1 Silent p.A141A 0.11 TCGA-A6-6654-01 17 37333483 37333483 C T CACNB1 Intron 0.24 TCGA-A6-6654-01 17 39183038 39183038 G A KRTAP1-5 Missense_Mutation p.R124C 0.20 tolerated(0.15) probably_damaging(0.991) TCGA-A6-6654-01 17 39644615 39644615 C A KRT36 Missense_Mutation p.E193D 0.25 deleterious(0.01) possibly_damaging(0.793) TCGA-A6-6654-01 17 45885757 45885757 G A OSBPL7 Missense_Mutation p.T810M 0.13 tolerated(0.13) benign(0.033) TCGA-A6-6654-01 17 4712641 4712641 C T PLD2 Missense_Mutation p.R180C 0.10 deleterious(0) probably_damaging(0.996) TCGA-A6-6654-01 17 56356912 56356912 G A MPO Missense_Mutation p.R174C 0.13 deleterious(0.01) possibly_damaging(0.852) TCGA-A6-6654-01 17 57290747 57290747 C T SMG8 Nonsense_Mutation p.R855* 0.10 TCGA-A6-6654-01 17 62506394 62506394 A G CEP95 Missense_Mutation p.I84M 0.16 deleterious(0) probably_damaging(0.957) TCGA-A6-6654-01 17 75202899 75202899 C T SEC14L1 Silent p.Y477Y 0.21 TCGA-A6-6654-01 17 7577085 7577085 C A TP53 Nonsense_Mutation p.E285* 0.34 TCGA-A6-6654-01 17 79095641 79095641 C T AATK Missense_Mutation p.V699I 0.15 tolerated(0.41) benign(0.001) TCGA-A6-6654-01 17 8732223 8732223 C T PIK3R6 Missense_Mutation p.R325Q 0.17 tolerated(0.69) benign(0.004) TCGA-A6-6654-01 18 22804563 22804563 T G ZNF521 Missense_Mutation p.I1107L 0.16 tolerated(0.34) benign(0.001) TCGA-A6-6654-01 18 23713949 23713949 G A PSMA8 Missense_Mutation p.R7K 0.20 deleterious(0.02) probably_damaging(1) TCGA-A6-6654-01 18 61471784 61471784 C T SERPINB7 Missense_Mutation p.T353M 0.14 tolerated(0.24) benign(0.269) TCGA-A6-6654-01 19 17316929 17316929 G A MYO9B Missense_Mutation p.R1742H 0.21 deleterious(0.03) probably_damaging(1) TCGA-A6-6654-01 19 22575246 22575246 T G ZNF98 Missense_Mutation p.K264T 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-A6-6654-01 19 35642302 35642302 G A FXYD7 Intron 0.16 TCGA-A6-6654-01 19 36049522 36049522 C T ATP4A Missense_Mutation p.R441H 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-A6-6654-01 19 38954485 38954485 G A RYR1 Silent p.T927T 0.15 TCGA-A6-6654-01 19 41307053 41307053 C T EGLN2 Silent p.C192C 0.09 TCGA-A6-6654-01 19 41355769 41355769 G A CYP2A6 Silent p.S99S 0.13 TCGA-A6-6654-01 19 43920549 43920549 C T TEX101 Missense_Mutation p.T96M 0.33 deleterious(0) benign(0.316) TCGA-A6-6654-01 19 46281816 46281816 C T DMPK Silent p.A182A 0.12 TCGA-A6-6654-01 19 48800353 48800353 G A CCDC114 Silent p.S631S 0.15 TCGA-A6-6654-01 19 49910869 49910869 C T CCDC155 Missense_Mutation p.R312C 0.32 deleterious(0) probably_damaging(0.949) TCGA-A6-6654-01 19 50316277 50316277 G A FUZ Silent p.R29R 0.27 TCGA-A6-6654-01 19 51128487 51128487 G A SYT3 Missense_Mutation p.R547C 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-A6-6654-01 19 51957557 51957557 G A SIGLEC8 Silent p.C387C 0.28 TCGA-A6-6654-01 19 54216640 54216640 T C MIR519D RNA 0.10 TCGA-A6-6654-01 19 54261543 54261543 G A MIR1283-2 RNA 0.11 TCGA-A6-6654-01 19 57755306 57755306 G A ZNF805 Missense_Mutation p.D16N 0.18 tolerated(0.1) benign(0.033) TCGA-A6-6654-01 19 58601373 58601374 - C ZSCAN18 Frame_Shift_Ins p.M144Dfs*16 0.12 TCGA-A6-6654-01 19 59065487 59065487 G A CHMP2A Silent p.R31R 0.09 TCGA-A6-6654-01 19 855699 855699 G A ELANE Missense_Mutation p.V168I 0.20 tolerated(0.22) benign(0.005) TCGA-A6-6654-01 1 120056981 120056981 C T HSD3B1 Missense_Mutation p.R279C 0.14 tolerated(0.24) benign(0.001) TCGA-A6-6654-01 1 152648576 152648576 C T LCE2C Missense_Mutation p.P29S 0.33 tolerated_low_confidence(0.3) unknown(0) TCGA-A6-6654-01 1 156595201 156595201 C T HAPLN2 3'UTR 0.10 TCGA-A6-6654-01 1 156928922 156928922 C T ARHGEF11 Missense_Mutation p.R432Q 0.44 tolerated(0.11) possibly_damaging(0.887) TCGA-A6-6654-01 1 158532692 158532692 G C OR6P1 Missense_Mutation p.H235D 0.12 deleterious(0.03) benign(0.032) TCGA-A6-6654-01 1 170521160 170521160 C T GORAB Missense_Mutation p.R248W 0.10 deleterious(0) probably_damaging(0.999) TCGA-A6-6654-01 1 171303754 171303754 C G FMO4 Silent p.L344L 0.36 TCGA-A6-6654-01 1 18809737 18809737 G A KLHDC7A Silent p.P754P 0.20 TCGA-A6-6654-01 1 197093441 197093445 TAAGT - ASPM Frame_Shift_Del p.N1062Rfs*28 0.08 TCGA-A6-6654-01 1 200959389 200959389 G A KIF21B Silent p.P969P 0.16 TCGA-A6-6654-01 1 205779313 205779313 G A SLC41A1 Missense_Mutation p.A86V 0.08 tolerated(0.28) benign(0.001) TCGA-A6-6654-01 1 216465672 216465672 C T USH2A Missense_Mutation p.R562H 0.09 benign(0.179) TCGA-A6-6654-01 1 216595322 216595322 G A USH2A Silent p.N119N 0.09 TCGA-A6-6654-01 1 221913066 221913066 G A DUSP10 Silent p.D7D 0.15 TCGA-A6-6654-01 1 23240123 23240123 G A EPHB2 3'UTR 0.11 TCGA-A6-6654-01 1 235826222 235826222 C T LYST 3'UTR 0.19 TCGA-A6-6654-01 1 240371587 240371587 G A FMN2 Missense_Mutation p.G1159R 0.21 unknown(0) TCGA-A6-6654-01 1 248344062 248344062 T A OR2M2 Missense_Mutation p.Y259N 0.33 tolerated(0.05) probably_damaging(0.991) TCGA-A6-6654-01 1 28223618 28223618 C T RPA2 Silent p.L141L 0.08 TCGA-A6-6654-01 1 31418205 31418205 C T PUM1 Silent p.A994A 0.12 TCGA-A6-6654-01 1 40125029 40125029 G A NT5C1A Missense_Mutation p.R291W 0.18 deleterious(0) probably_damaging(1) TCGA-A6-6654-01 1 46977935 46977935 C T DMBX1 Silent p.G301G 0.17 TCGA-A6-6654-01 1 55166046 55166046 G A MROH7 Missense_Mutation p.R1006Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-A6-6654-01 1 62940945 62940945 C T DOCK7 Silent p.Q1982Q 0.12 TCGA-A6-6654-01 1 77510002 77510002 C T ST6GALNAC5 Silent p.D125D 0.18 TCGA-A6-6654-01 1 79102746 79102746 G A IFI44L Silent p.E302E 0.11 TCGA-A6-6654-01 1 9164484 9164484 G T GPR157 Missense_Mutation p.S334R 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.663) TCGA-A6-6654-01 1 95360382 95360382 A G SLC44A3 Silent p.V622V 0.19 TCGA-A6-6654-01 20 1293097 1293097 C T SDCBP2 Missense_Mutation p.V206M 0.12 tolerated(0.08) benign(0.21) TCGA-A6-6654-01 20 13850180 13850180 G A SEL1L2 Silent p.D408D 0.17 TCGA-A6-6654-01 20 17462302 17462302 C T PCSK2 Missense_Mutation p.R502C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6654-01 20 25507059 25507059 G A NINL Silent p.N55N 0.15 TCGA-A6-6654-01 20 25655705 25655705 C T ZNF337 Missense_Mutation p.R740H 0.15 deleterious(0) benign(0.05) TCGA-A6-6654-01 20 44642331 44642331 G A MMP9 Missense_Mutation p.R549Q 0.12 tolerated(0.37) benign(0.004) TCGA-A6-6654-01 20 45354350 45354350 C T SLC2A10 Silent p.R225R 0.12 TCGA-A6-6654-01 20 60318746 60318746 G A CDH4 Silent p.A99A 0.30 TCGA-A6-6654-01 20 60966379 60966379 C T CABLES2 Missense_Mutation p.A408T 0.12 deleterious(0.03) possibly_damaging(0.771) TCGA-A6-6654-01 20 62222064 62222064 T C GMEB2 Missense_Mutation p.D324G 0.24 deleterious(0) possibly_damaging(0.583) TCGA-A6-6654-01 21 41151135 41151135 G A IGSF5 Silent p.P279P 0.14 TCGA-A6-6654-01 21 47532249 47532249 G A COL6A2 Missense_Mutation p.V158M 0.14 deleterious(0) probably_damaging(0.99) TCGA-A6-6654-01 22 18766291 18766291 G A GGT3P RNA 0.15 TCGA-A6-6654-01 22 20130507 20130507 C T ZDHHC8 Missense_Mutation p.R452C 0.27 deleterious(0.05) possibly_damaging(0.847) TCGA-A6-6654-01 22 24622686 24622686 G A GGT5 Silent p.N317N 0.14 TCGA-A6-6654-01 22 26286823 26286823 G A MYO18B Missense_Mutation p.R1472Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-A6-6654-01 22 45802704 45802704 C T SMC1B Missense_Mutation p.R114H 0.12 tolerated(0.65) possibly_damaging(0.479) TCGA-A6-6654-01 2 101183002 101183002 G A PDCL3 Missense_Mutation p.R15H 0.10 deleterious(0.02) benign(0.307) TCGA-A6-6654-01 2 10269709 10269709 C T RRM2 3'UTR 0.38 TCGA-A6-6654-01 2 120124511 120124551 CAGGGTTGGGGCGAGTGGACCGCGCCTCTAAAGGCGCTTGC - DBI 5'Flank 0.24 TCGA-A6-6654-01 2 131673744 131673744 G A ARHGEF4 5'Flank 0.17 TCGA-A6-6654-01 2 152382718 152382718 G A NEB Missense_Mutation p.T7335M 0.45 probably_damaging(1) TCGA-A6-6654-01 2 152728990 152728990 G T CACNB4 Missense_Mutation p.S180Y 0.27 deleterious(0) probably_damaging(0.909) TCGA-A6-6654-01 2 161133816 161133816 C T RBMS1 Missense_Mutation p.E381K 0.40 deleterious(0) benign(0.11) TCGA-A6-6654-01 2 163130424 163130424 G A IFIH1 Missense_Mutation p.R779C 0.10 deleterious(0) probably_damaging(0.993) TCGA-A6-6654-01 2 192234281 192234281 G A MYO1B Missense_Mutation p.R349H 0.11 deleterious(0) probably_damaging(0.997) TCGA-A6-6654-01 2 209165750 209165750 G A PIKFYVE Silent p.T380T 0.12 TCGA-A6-6654-01 2 216262521 216262521 T A FN1 Silent p.S1133S 0.10 TCGA-A6-6654-01 2 216904033 216904033 T C PECR Missense_Mutation p.M293V 0.10 tolerated(0.14) unknown(0) TCGA-A6-6654-01 2 223066812 223066812 G A PAX3 Missense_Mutation p.T424M 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-A6-6654-01 2 235943552 235943552 G A SH3BP4 5'UTR 0.38 TCGA-A6-6654-01 2 242076585 242076585 G A PASK Missense_Mutation p.A324V 0.17 tolerated(0.43) benign(0.005) TCGA-A6-6654-01 2 242573054 242573054 C T THAP4 Missense_Mutation p.R173Q 0.16 deleterious_low_confidence(0.05) benign(0.012) TCGA-A6-6654-01 2 38301756 38301756 C T CYP1B1 Missense_Mutation p.R259H 0.10 deleterious(0.01) probably_damaging(0.946) TCGA-A6-6654-01 2 50318473 50318473 G A NRXN1 Missense_Mutation p.R1276C 0.11 deleterious(0) probably_damaging(0.987) TCGA-A6-6654-01 2 51254706 51254706 C T NRXN1 Missense_Mutation p.V236M 0.38 tolerated(0.1) possibly_damaging(0.826) TCGA-A6-6654-01 2 60688291 60688291 C T BCL11A Missense_Mutation p.D586N 0.12 tolerated(0.22) benign(0.009) TCGA-A6-6654-01 2 64322198 64322198 C T PELI1 Missense_Mutation p.V299I 0.10 tolerated(0.31) benign(0.005) TCGA-A6-6654-01 2 71796968 71796968 C T DYSF Silent p.D961D 0.42 TCGA-A6-6654-01 2 87140979 87140979 C T RGPD1 5'Flank 0.33 TCGA-A6-6654-01 3 132407633 132407633 C T NPHP3 Missense_Mutation p.V996M 0.09 tolerated(0.18) benign(0.298) TCGA-A6-6654-01 3 133302864 133302864 C T CDV3 Silent p.D112D 0.12 TCGA-A6-6654-01 3 143185954 143185954 G A SLC9A9 Missense_Mutation p.T465M 0.13 deleterious(0.02) probably_damaging(0.94) TCGA-A6-6654-01 3 148759425 148759425 T C HLTF Missense_Mutation p.K743R 0.18 tolerated(0.68) benign(0.012) TCGA-A6-6654-01 3 17279658 17279658 T A TBC1D5 Nonsense_Mutation p.K529* 0.12 TCGA-A6-6654-01 3 176765312 176765312 C A TBL1XR1 Missense_Mutation p.G243V 0.16 deleterious(0.02) possibly_damaging(0.866) TCGA-A6-6654-01 3 183951137 183951137 C T VWA5B2 Missense_Mutation p.P161L 0.33 tolerated(0.33) benign(0.004) TCGA-A6-6654-01 3 184008969 184008969 C T ECE2 Missense_Mutation p.T777M 0.23 deleterious(0) probably_damaging(1) TCGA-A6-6654-01 3 186917806 186917806 C T RTP1 Missense_Mutation p.T247M 0.15 tolerated(0.12) benign(0.2) TCGA-A6-6654-01 3 67570981 67570981 G A SUCLG2 Silent p.P165P 0.16 TCGA-A6-6654-01 3 99569869 99569871 CTT - FILIP1L In_Frame_Del p.K217del 0.13 TCGA-A6-6654-01 4 1305835 1305835 C T MAEA Silent p.H46H 0.10 TCGA-A6-6654-01 4 4228381 4228381 C T OTOP1 Missense_Mutation p.V71M 0.26 tolerated(0.06) benign(0.077) TCGA-A6-6654-01 4 42467035 42467035 C T ATP8A1 Missense_Mutation p.V795I 0.10 tolerated(1) benign(0.002) TCGA-A6-6654-01 4 85636510 85636510 T C WDFY3 Silent p.G2634G 0.15 TCGA-A6-6654-01 4 95506741 95506741 C T PDLIM5 Missense_Mutation p.R143C 0.17 deleterious(0.03) benign(0.056) TCGA-A6-6654-01 5 112175390 112175390 C T APC Nonsense_Mutation p.Q1367* 0.14 TCGA-A6-6654-01 5 140167914 140167914 C T PCDHA1 Missense_Mutation p.S680L 0.13 tolerated_low_confidence(0.1) benign(0.018) TCGA-A6-6654-01 5 140256159 140256159 G A PCDHA12 Missense_Mutation p.V368I 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.621) TCGA-A6-6654-01 5 140595857 140595857 C T PCDHB13 Missense_Mutation p.S721L 0.15 tolerated_low_confidence(0.05) benign(0.043) TCGA-A6-6654-01 5 140730444 140730444 G A PCDHGB1 Missense_Mutation p.R206H 0.21 tolerated(1) benign(0.006) TCGA-A6-6654-01 5 140734953 140734953 C T PCDHGA4 Silent p.R62R 0.09 TCGA-A6-6654-01 5 149504305 149504305 C T PDGFRB Missense_Mutation p.V633I 0.21 tolerated(0.06) probably_damaging(0.986) TCGA-A6-6654-01 5 159437640 159437640 T C TTC1 Silent p.D35D 0.08 TCGA-A6-6654-01 5 178373922 178373922 C T ZNF454 Missense_Mutation p.T62M 0.09 tolerated(0.15) benign(0.001) TCGA-A6-6654-01 5 179751874 179751874 G A GFPT2 Silent p.I206I 0.16 TCGA-A6-6654-01 5 180377221 180377221 C T BTNL8 Missense_Mutation p.R394C 0.21 deleterious(0.01) possibly_damaging(0.684) TCGA-A6-6654-01 5 36679892 36679892 C T SLC1A3 Missense_Mutation p.R342W 0.11 deleterious(0) probably_damaging(0.989) TCGA-A6-6654-01 6 151773646 151773646 A G C6orf211 5'UTR 0.08 TCGA-A6-6654-01 6 22570331 22570331 C T HDGFL1 Missense_Mutation p.A176V 0.25 tolerated_low_confidence(0.21) possibly_damaging(0.499) TCGA-A6-6654-01 6 25726649 25726649 C T HIST1H2AA Missense_Mutation p.R36H 0.11 tolerated_low_confidence(0.06) benign(0.065) TCGA-A6-6654-01 6 29574964 29574964 C T GABBR1 Missense_Mutation p.S675N 0.23 deleterious(0) possibly_damaging(0.868) TCGA-A6-6654-01 6 32370752 32370752 G A BTNL2 Silent p.P223P 0.14 TCGA-A6-6654-01 6 35446213 35446213 G A TEAD3 Missense_Mutation p.R160W 0.11 deleterious(0.02) benign(0.015) TCGA-A6-6654-01 6 37622186 37622186 C A MDGA1 Silent p.L282L 0.31 TCGA-A6-6654-01 6 76022883 76022883 G A FILIP1 Nonsense_Mutation p.R889* 0.28 TCGA-A6-6654-01 6 76751677 76751677 A G IMPG1 Silent p.V78V 0.12 TCGA-A6-6654-01 6 97561926 97561926 C T KLHL32 Missense_Mutation p.R299C 0.11 deleterious(0) probably_damaging(0.997) TCGA-A6-6654-01 7 102669175 102669175 C T FBXL13 Missense_Mutation p.R30H 0.10 tolerated(0.37) benign(0.001) TCGA-A6-6654-01 7 131853085 131853085 G A PLXNA4 Missense_Mutation p.H1422Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-A6-6654-01 7 142880515 142880515 C A TAS2R39 Missense_Mutation p.L2I 0.22 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-A6-6654-01 7 148904447 148904447 G A ZNF282 Silent p.A239A 0.26 TCGA-A6-6654-01 7 2317864 2317864 C T SNX8 Silent p.P57P 0.27 TCGA-A6-6654-01 7 44152234 44152234 C T AEBP1 Silent p.G765G 0.18 TCGA-A6-6654-01 7 4998688 4998688 G A MMD2 5'UTR 0.22 TCGA-A6-6654-01 7 74197386 74197386 G A NCF1 Missense_Mutation p.V186I 0.21 tolerated(0.22) possibly_damaging(0.862) TCGA-A6-6654-01 7 82545765 82545765 C G PCLO Missense_Mutation p.R3846P 0.08 unknown(0) TCGA-A6-6654-01 7 93065328 93065328 C T CALCR Missense_Mutation p.R396K 0.12 tolerated(0.32) benign(0.084) TCGA-A6-6654-01 8 101065130 101065130 C T RGS22 Missense_Mutation p.R530H 0.12 tolerated(0.1) possibly_damaging(0.847) TCGA-A6-6654-01 8 108970419 108970419 G T RSPO2 Missense_Mutation p.L169M 0.10 deleterious(0.04) possibly_damaging(0.793) TCGA-A6-6654-01 8 139703091 139703091 G A COL22A1 Silent p.P927P 0.15 TCGA-A6-6654-01 8 144351607 144351607 C T GLI4 Missense_Mutation p.P14L 0.18 tolerated(0.35) benign(0.002) TCGA-A6-6654-01 8 6420389 6420389 G A ANGPT2 Missense_Mutation p.R23W 0.07 deleterious(0.01) possibly_damaging(0.776) TCGA-A6-6654-01 8 72184023 72184023 A T EYA1 Missense_Mutation p.N312K 0.09 deleterious(0.03) possibly_damaging(0.669) TCGA-A6-6654-01 8 86163120 86163120 C T CA13 Silent p.S63S 0.09 TCGA-A6-6654-01 9 104312963 104312963 G A RNF20 Missense_Mutation p.V390I 0.18 tolerated(0.1) benign(0.103) TCGA-A6-6654-01 9 112899169 112899169 C G PALM2-AKAP2 Missense_Mutation p.L449V 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-6654-01 9 117826238 117826238 C A TNC Silent p.V1199V 0.39 TCGA-A6-6654-01 9 127177143 127177143 G A PSMB7 Missense_Mutation p.T45I 0.15 deleterious(0) probably_damaging(1) TCGA-A6-6654-01 9 128268652 128268652 C T MAPKAP1 Missense_Mutation p.V335I 0.19 tolerated(0.54) benign(0.02) TCGA-A6-6654-01 9 132658188 132658188 C T FNBP1 Missense_Mutation p.R592Q 0.13 deleterious(0.04) probably_damaging(0.992) TCGA-A6-6654-01 9 133799146 133799146 G A FIBCD1 Silent p.D278D 0.15 TCGA-A6-6654-01 9 139350209 139350209 G A SEC16A Missense_Mutation p.P1901S 0.09 deleterious(0.02) benign(0.233) TCGA-A6-6654-01 9 140034045 140034045 G A GRIN1 Missense_Mutation p.R36Q 0.17 tolerated(0.21) benign(0.018) TCGA-A6-6654-01 9 33467862 33467862 G A NOL6 Missense_Mutation p.R477C 0.22 tolerated(0.2) benign(0.003) TCGA-A6-6654-01 9 72741297 72741297 C T MAMDC2 Missense_Mutation p.A289V 0.17 tolerated(0.48) benign(0.098) TCGA-A6-6654-01 X 125299762 125299762 C T DCAF12L2 Missense_Mutation p.R49H 0.19 tolerated(0.06) benign(0.013) TCGA-A6-6654-01 X 153649070 153649070 C T TAZ Missense_Mutation p.S258L 0.12 deleterious(0) benign(0.207) TCGA-A6-6654-01 X 1584669 1584669 G A P2RY8 Silent p.I261I 0.17 TCGA-A6-6654-01 X 37028158 37028158 C T FAM47C Missense_Mutation p.R559C 0.25 tolerated(0.2) possibly_damaging(0.835) TCGA-A6-6654-01 X 69283670 69283670 C T OTUD6A 3'UTR 0.40 TCGA-A6-6654-01 X 70352331 70352331 A C MED12 Missense_Mutation p.K1453T 0.17 benign(0.28) TCGA-A6-6780-01 10 101841220 101841220 C T CPN1 Missense_Mutation p.V55M 0.55 tolerated(0.11) probably_damaging(0.989) TCGA-A6-6780-01 10 104176197 104176197 G - PSD Frame_Shift_Del p.P200Lfs*17 0.35 TCGA-A6-6780-01 10 104678505 104678505 G - CNNM2 Frame_Shift_Del p.A92Rfs*4 0.26 TCGA-A6-6780-01 10 104849337 104849337 C - NT5C2 3'UTR 0.23 TCGA-A6-6780-01 10 112769061 112769061 T C SHOC2 Missense_Mutation p.L447P 0.04 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 10 115391315 115391315 C T NRAP Missense_Mutation p.D599N 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 10 116621264 116621264 G A FAM160B1 Missense_Mutation p.A755T 0.40 deleterious(0) probably_damaging(0.98) TCGA-A6-6780-01 10 117884971 117884971 C T GFRA1 Silent p.P177P 0.45 TCGA-A6-6780-01 10 120863666 120863666 C T FAM45A Silent p.A4A 0.40 TCGA-A6-6780-01 10 120967263 120967263 G A GRK5 5'UTR 0.45 TCGA-A6-6780-01 10 121618394 121618394 A G MCMBP Splice_Site p.X109_splice 0.31 TCGA-A6-6780-01 10 122664871 122664871 C T WDR11 Silent p.D1078D 0.41 TCGA-A6-6780-01 10 12292342 12292342 G A CDC123 3'UTR 0.25 TCGA-A6-6780-01 10 123970831 123970831 G A TACC2 Missense_Mutation p.M2297I 0.28 probably_damaging(0.998) TCGA-A6-6780-01 10 125805590 125805590 C T CHST15 Missense_Mutation p.V47M 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.499) TCGA-A6-6780-01 10 127542779 127542779 A - DHX32 Intron 0.30 TCGA-A6-6780-01 10 127708371 127708372 - G ADAM12 Frame_Shift_Ins p.Q855Sfs*55 0.29 TCGA-A6-6780-01 10 129868069 129868069 G A PTPRE Missense_Mutation p.R374H 0.36 deleterious(0.01) probably_damaging(0.961) TCGA-A6-6780-01 10 129900863 129900863 C G MKI67 Missense_Mutation p.D3081H 0.30 tolerated(0.15) possibly_damaging(0.887) TCGA-A6-6780-01 10 134738297 134738297 G A TTC40 Nonsense_Mutation p.Q387* 0.34 TCGA-A6-6780-01 10 135140482 135140482 C T CALY Missense_Mutation p.R87Q 0.30 tolerated(0.51) probably_damaging(0.998) TCGA-A6-6780-01 10 135165955 135165955 G A PRAP1 3'UTR 0.35 TCGA-A6-6780-01 10 135176430 135176430 C T ECHS1 Missense_Mutation p.R272Q 0.33 tolerated(1) possibly_damaging(0.746) TCGA-A6-6780-01 10 13712521 13712521 G A FRMD4A Missense_Mutation p.T420M 0.30 deleterious(0) probably_damaging(0.995) TCGA-A6-6780-01 10 15255561 15255561 C T FAM171A1 Missense_Mutation p.A676T 0.32 tolerated(0.2) probably_damaging(1) TCGA-A6-6780-01 10 15713606 15713606 C A ITGA8 Missense_Mutation p.Q281H 0.31 tolerated(0.1) benign(0.281) TCGA-A6-6780-01 10 16980980 16980980 G A CUBN Silent p.C1905C 0.39 TCGA-A6-6780-01 10 18284636 18284636 G T SLC39A12 Missense_Mutation p.A529S 0.35 tolerated(0.7) benign(0.01) TCGA-A6-6780-01 10 21805155 21805155 A G SKIDA1 Missense_Mutation p.Y533H 0.26 tolerated(0.49) unknown(0) TCGA-A6-6780-01 10 21884283 21884283 C A MLLT10 Missense_Mutation p.L107M 0.31 deleterious(0) possibly_damaging(0.866) TCGA-A6-6780-01 10 22217474 22217474 G A DNAJC1 Missense_Mutation p.A111V 0.35 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 10 226018 226018 T C ZMYND11 Silent p.I22I 0.42 TCGA-A6-6780-01 10 22830827 22830828 - G PIP4K2A Frame_Shift_Ins p.D315Rfs*2 0.34 TCGA-A6-6780-01 10 24885724 24885724 G A ARHGAP21 Missense_Mutation p.A1141V 0.27 deleterious(0.01) possibly_damaging(0.575) TCGA-A6-6780-01 10 25313677 25313677 G T THNSL1 Nonsense_Mutation p.G509* 0.30 TCGA-A6-6780-01 10 27434635 27434635 T - YME1L1 Intron 0.16 TCGA-A6-6780-01 10 27454349 27454349 C A MASTL Missense_Mutation p.P231H 0.37 tolerated(0.07) benign(0.139) TCGA-A6-6780-01 10 27459253 27459254 - A MASTL Frame_Shift_Ins p.I458Nfs*5 0.30 TCGA-A6-6780-01 10 27499984 27499984 A G ACBD5 Silent p.N321N 0.37 TCGA-A6-6780-01 10 29824989 29824989 T G SVIL Missense_Mutation p.K279N 0.33 deleterious(0.02) possibly_damaging(0.675) TCGA-A6-6780-01 10 32096466 32096466 A - ARHGAP12 3'UTR 0.48 TCGA-A6-6780-01 10 45480368 45480368 C T RASSF4 Missense_Mutation p.R161C 0.34 deleterious(0) possibly_damaging(0.77) TCGA-A6-6780-01 10 45958634 45958634 G - MARCH8 Intron 0.18 TCGA-A6-6780-01 10 48390044 48390046 GAA - RBP3 In_Frame_Del p.F278del 0.27 TCGA-A6-6780-01 10 5437423 5437423 C T TUBAL3 Missense_Mutation p.G88D 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-6780-01 10 5567506 5567506 G A CALML3 3'UTR 0.17 TCGA-A6-6780-01 10 5978452 5978452 G A FBXO18 Missense_Mutation p.V1006I 0.51 tolerated(0.17) benign(0.087) TCGA-A6-6780-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.16 TCGA-A6-6780-01 10 6155498 6155498 C T RBM17 Missense_Mutation p.P295L 0.25 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 10 62029955 62029955 C A ANK3 Missense_Mutation p.Q149H 0.08 benign(0.011) TCGA-A6-6780-01 10 6262656 6262656 G A PFKFB3 Missense_Mutation p.R220Q 0.35 benign(0.011) TCGA-A6-6780-01 10 6268278 6268278 G A PFKFB3 Missense_Mutation p.A489T 0.49 benign(0.178) TCGA-A6-6780-01 10 63999246 63999248 CTT - RTKN2 Intron 0.24 TCGA-A6-6780-01 10 64565351 64565351 G T ADO Nonsense_Mutation p.E178* 0.32 TCGA-A6-6780-01 10 70182530 70182530 G A DNA2 Missense_Mutation p.L862F 0.04 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 10 70742433 70742433 C T DDX21 Silent p.D739D 0.31 TCGA-A6-6780-01 10 70776073 70776073 C T KIAA1279 Silent p.A589A 0.37 TCGA-A6-6780-01 10 70949119 70949119 A G SUPV3L1 Silent p.S223S 0.45 TCGA-A6-6780-01 10 70992779 70992779 T G HKDC1 Missense_Mutation p.Y129D 0.29 deleterious(0.01) possibly_damaging(0.865) TCGA-A6-6780-01 10 71267288 71267288 T C TSPAN15 3'UTR 0.37 TCGA-A6-6780-01 10 72136301 72136301 T C LRRC20 5'UTR 0.20 TCGA-A6-6780-01 10 73765727 73765727 A - CHST3 Frame_Shift_Del p.I44Sfs*9 0.26 TCGA-A6-6780-01 10 75394372 75394372 G A MYOZ1 Silent p.A124A 0.37 TCGA-A6-6780-01 10 7848934 7848934 C A ATP5C1 Intron 0.32 TCGA-A6-6780-01 10 81697760 81697760 A G SFTPD Missense_Mutation p.Y326H 0.37 deleterious(0.02) probably_damaging(0.972) TCGA-A6-6780-01 10 858860 858860 C G LARP4B 3'UTR 0.38 TCGA-A6-6780-01 10 88817495 88817495 C A GLUD1 Nonsense_Mutation p.G483* 0.24 TCGA-A6-6780-01 10 89624228 89624228 T C PTEN Translation_Start_Site p.M1? 0.45 deleterious(0) probably_damaging(0.969) TCGA-A6-6780-01 10 90768708 90768708 T - FAS Frame_Shift_Del p.C135Vfs*52 0.22 TCGA-A6-6780-01 10 92508896 92508896 A G HTR7 Missense_Mutation p.I332T 0.29 deleterious(0) probably_damaging(0.969) TCGA-A6-6780-01 10 94654572 94654572 C A EXOC6 Silent p.R99R 0.29 TCGA-A6-6780-01 10 97916214 97916214 A - ZNF518A RNA 0.22 TCGA-A6-6780-01 10 97922715 97922715 C T ZNF518A RNA 0.32 TCGA-A6-6780-01 10 98130063 98130063 C - TLL2 Frame_Shift_Del p.G891Afs*3 0.30 TCGA-A6-6780-01 10 98144370 98144370 C T TLL2 Missense_Mutation p.R723H 0.31 deleterious(0.02) benign(0.068) TCGA-A6-6780-01 10 98292809 98292810 - T TM9SF3 Frame_Shift_Ins p.W442Mfs*23 0.25 TCGA-A6-6780-01 11 101981616 101981616 C A YAP1 Missense_Mutation p.P13T 0.44 deleterious_low_confidence(0.04) unknown(0) TCGA-A6-6780-01 11 102589222 102589222 T G MMP8 Missense_Mutation p.Y236S 0.21 deleterious(0.01) possibly_damaging(0.84) TCGA-A6-6780-01 11 108181042 108181042 G T ATM Missense_Mutation p.R1973I 0.38 deleterious(0) benign(0.359) TCGA-A6-6780-01 11 1086419 1086419 G A MUC2 Missense_Mutation p.R1043H 0.05 probably_damaging(0.964) TCGA-A6-6780-01 11 10874275 10874275 A G ZBED5 3'UTR 0.33 TCGA-A6-6780-01 11 111889680 111889680 A T DIXDC1 Missense_Mutation p.I657F 0.28 deleterious(0) benign(0.13) TCGA-A6-6780-01 11 113677254 113677254 C T USP28 Missense_Mutation p.R786H 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-A6-6780-01 11 114168818 114168819 AG - NNMT Frame_Shift_Del p.E101Afs*5 0.27 TCGA-A6-6780-01 11 114577393 114577393 A T NXPE2 Missense_Mutation p.E474V 0.34 deleterious(0) benign(0.126) TCGA-A6-6780-01 11 117234192 117234193 - G CEP164 Frame_Shift_Ins p.A247Gfs*5 0.21 TCGA-A6-6780-01 11 118307519 118307519 T C KMT2A Missense_Mutation p.S98P 0.41 unknown(0) TCGA-A6-6780-01 11 118766000 118766000 T C BCL9L 3'UTR 0.31 TCGA-A6-6780-01 11 118769880 118769880 C - BCL9L Frame_Shift_Del p.P1249Lfs*32 0.52 TCGA-A6-6780-01 11 119050765 119050765 C A NLRX1 Missense_Mutation p.L679I 0.38 tolerated(0.07) probably_damaging(0.996) TCGA-A6-6780-01 11 119212225 119212225 C T MFRP 3'UTR 0.11 TCGA-A6-6780-01 11 11977961 11977961 A - USP47 3'UTR 0.29 TCGA-A6-6780-01 11 120996375 120996375 A G TECTA Missense_Mutation p.Y523C 0.41 deleterious(0) possibly_damaging(0.895) TCGA-A6-6780-01 11 122852359 122852359 A T BSX Silent p.S7S 0.41 TCGA-A6-6780-01 11 1263635 1263635 A G MUC5B Missense_Mutation p.Q1842R 0.41 unknown(0) TCGA-A6-6780-01 11 1267481 1267481 C - MUC5B Frame_Shift_Del p.S3126Pfs*13 0.25 TCGA-A6-6780-01 11 128963558 128963558 A G ARHGAP32 Silent p.C149C 0.37 TCGA-A6-6780-01 11 133826755 133826755 C T IGSF9B 5'UTR 0.07 TCGA-A6-6780-01 11 16007768 16007768 C A SOX6 Missense_Mutation p.R702M 0.30 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 11 16823247 16823247 G T PLEKHA7 Missense_Mutation p.H759N 0.13 tolerated(0.14) benign(0.334) TCGA-A6-6780-01 11 18553738 18553738 C A UEVLD 3'UTR 0.40 TCGA-A6-6780-01 11 18743163 18743163 G T IGSF22 Silent p.S99S 0.08 TCGA-A6-6780-01 11 1902786 1902786 C - LSP1 Frame_Shift_Del p.Q236Sfs*31 0.23 TCGA-A6-6780-01 11 19246304 19246304 G T E2F8 Missense_Mutation p.S835R 0.45 tolerated(0.07) benign(0.193) TCGA-A6-6780-01 11 19253910 19253910 T A E2F8 Missense_Mutation p.R313W 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 11 19256555 19256555 G A E2F8 Missense_Mutation p.H168Y 0.28 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 11 20660028 20660028 T G SLC6A5 Silent p.L631L 0.32 TCGA-A6-6780-01 11 212947 212947 A G RIC8A Missense_Mutation p.T447A 0.28 deleterious(0) possibly_damaging(0.644) TCGA-A6-6780-01 11 2189156 2189156 G A TH Missense_Mutation p.S226L 0.45 deleterious(0.01) possibly_damaging(0.779) TCGA-A6-6780-01 11 22384370 22384370 C T SLC17A6 Silent p.Y249Y 0.19 TCGA-A6-6780-01 11 2291436 2291436 C A ASCL2 Missense_Mutation p.A43S 0.27 tolerated(0.97) benign(0.002) TCGA-A6-6780-01 11 26678000 26678000 C T ANO3 Missense_Mutation p.A912V 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-A6-6780-01 11 34988314 34988314 C T PDHX Missense_Mutation p.R257W 0.37 deleterious(0) possibly_damaging(0.88) TCGA-A6-6780-01 11 3661312 3661312 G A ART5 Missense_Mutation p.T116M 0.29 tolerated(0.11) benign(0.149) TCGA-A6-6780-01 11 46401591 46401591 G A DGKZ 3'UTR 0.10 TCGA-A6-6780-01 11 47267171 47267171 T G ACP2 Intron 0.45 TCGA-A6-6780-01 11 47435197 47435197 A G SLC39A13 Missense_Mutation p.H232R 0.26 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 11 47744732 47744732 T C FNBP4 Silent p.A867A 0.24 TCGA-A6-6780-01 11 4825380 4825380 G T OR52R1 Silent p.S77S 0.26 TCGA-A6-6780-01 11 48328525 48328525 C - OR4S1 Frame_Shift_Del p.M253Cfs*23 0.20 TCGA-A6-6780-01 11 489686 489686 C T PTDSS2 Silent p.N356N 0.30 TCGA-A6-6780-01 11 559393 559393 C A C11orf35 Intron 0.21 TCGA-A6-6780-01 11 56086393 56086393 C T OR8K3 Missense_Mutation p.A204V 0.25 tolerated_low_confidence(0.16) benign(0.064) TCGA-A6-6780-01 11 57440623 57440623 G A ZDHHC5 Missense_Mutation p.A21T 0.37 tolerated(0.34) benign(0.028) TCGA-A6-6780-01 11 5757842 5757842 G A OR56B1 Nonsense_Mutation p.W32* 0.32 TCGA-A6-6780-01 11 60621096 60621096 C T PTGDR2 Missense_Mutation p.A34T 0.37 tolerated(0.19) benign(0.009) TCGA-A6-6780-01 11 60696265 60696265 A G TMEM132A Silent p.P233P 0.21 TCGA-A6-6780-01 11 61094347 61094347 C T DDB1 Missense_Mutation p.V190I 0.26 tolerated(0.29) benign(0.075) TCGA-A6-6780-01 11 614299 614299 T C IRF7 Missense_Mutation p.Q198R 0.26 deleterious(0) probably_damaging(0.957) TCGA-A6-6780-01 11 62346181 62346181 C - TUT1 Frame_Shift_Del p.A376Qfs*59 0.26 TCGA-A6-6780-01 11 6262932 6262932 G A CNGA4 Missense_Mutation p.A397T 0.39 deleterious(0) probably_damaging(0.987) TCGA-A6-6780-01 11 62655828 62655828 T C SLC3A2 Missense_Mutation p.L520P 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-A6-6780-01 11 62848506 62848507 - G SLC22A24 Frame_Shift_Ins p.H495Pfs*31 0.23 TCGA-A6-6780-01 11 6290998 6290998 G A CCKBR Missense_Mutation p.R84H 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6780-01 11 63313709 63313709 A - RARRES3 Frame_Shift_Del p.A162Rfs*56 0.70 TCGA-A6-6780-01 11 64065623 64065623 G A KCNK4 Missense_Mutation p.V235M 0.26 deleterious(0) probably_damaging(0.976) TCGA-A6-6780-01 11 64374838 64374838 T C NRXN2 Missense_Mutation p.M1657V 0.35 deleterious(0) benign(0.039) TCGA-A6-6780-01 11 64434906 64434906 A G NRXN2 Silent p.A538A 0.38 TCGA-A6-6780-01 11 64521136 64521136 G T PYGM Missense_Mutation p.P420T 0.07 deleterious(0.02) possibly_damaging(0.83) TCGA-A6-6780-01 11 64532939 64532939 C T SF1 Missense_Mutation p.R670H 0.42 tolerated_low_confidence(0.42) unknown(0) TCGA-A6-6780-01 11 64572185 64572185 C T MEN1 Missense_Mutation p.R490Q 0.35 tolerated(0.4) probably_damaging(0.968) TCGA-A6-6780-01 11 6477838 6477838 C T TRIM3 Missense_Mutation p.R373H 0.10 tolerated(0.58) possibly_damaging(0.759) TCGA-A6-6780-01 11 64812055 64812055 G A SAC3D1 Silent p.R311R 0.32 TCGA-A6-6780-01 11 64985021 64985021 C - SLC22A20 RNA 0.41 TCGA-A6-6780-01 11 65161085 65161085 C T FRMD8 Missense_Mutation p.R99C 0.28 deleterious(0) probably_damaging(0.964) TCGA-A6-6780-01 11 65363148 65363148 C A KCNK7 Missense_Mutation p.E32D 0.39 deleterious(0) probably_damaging(0.996) TCGA-A6-6780-01 11 65374290 65374290 G - MAP3K11 Intron 0.23 TCGA-A6-6780-01 11 65688800 65688801 - C DRAP1 Frame_Shift_Ins p.T174Dfs*23 0.25 TCGA-A6-6780-01 11 6590002 6590002 C - DNHD1 Frame_Shift_Del p.T4259Pfs*33 0.29 TCGA-A6-6780-01 11 66033448 66033448 C A KLC2 Missense_Mutation p.L523I 0.36 tolerated_low_confidence(0.33) benign(0.017) TCGA-A6-6780-01 11 66108714 66108714 C - BRMS1 Frame_Shift_Del p.L108Cfs*22 0.25 TCGA-A6-6780-01 11 6629279 6629279 C T ILK Silent p.D31D 0.38 TCGA-A6-6780-01 11 66436298 66436298 C T RBM4B Missense_Mutation p.A293T 0.39 tolerated(0.22) benign(0.075) TCGA-A6-6780-01 11 66466974 66466974 G A SPTBN2 Missense_Mutation p.R1227W 0.29 deleterious(0) probably_damaging(0.94) TCGA-A6-6780-01 11 66468190 66468190 A G SPTBN2 Missense_Mutation p.L1127P 0.43 tolerated(0.11) possibly_damaging(0.557) TCGA-A6-6780-01 11 66475107 66475107 C T SPTBN2 Silent p.R511R 0.29 TCGA-A6-6780-01 11 66610753 66610753 G A C11orf80 3'UTR 0.27 TCGA-A6-6780-01 11 66986811 66986811 T - KDM2A Frame_Shift_Del p.L300Cfs*10 0.27 TCGA-A6-6780-01 11 6790098 6790098 A T OR2AG2 Missense_Mutation p.F31I 0.15 tolerated(1) benign(0) TCGA-A6-6780-01 11 67938501 67938501 C T SUV420H1 Missense_Mutation p.E320K 0.30 deleterious(0.01) possibly_damaging(0.787) TCGA-A6-6780-01 11 6806307 6806307 T C OR2AG1 Silent p.I13I 0.04 TCGA-A6-6780-01 11 6964824 6964824 A - ZNF215 Frame_Shift_Del p.R224Dfs*3 0.23 TCGA-A6-6780-01 11 7063967 7063967 G A NLRP14 Nonsense_Mutation p.W237* 0.32 TCGA-A6-6780-01 11 70666738 70666738 G - SHANK2 Frame_Shift_Del p.N410Tfs*148 0.25 TCGA-A6-6780-01 11 71249082 71249082 A G KRTAP5-8 5'UTR 0.21 TCGA-A6-6780-01 11 73021272 73021272 C T ARHGEF17 Missense_Mutation p.T530M 0.37 tolerated_low_confidence(0.1) benign(0.115) TCGA-A6-6780-01 11 73122520 73122520 G - FAM168A Frame_Shift_Del p.Y114Tfs*89 0.28 TCGA-A6-6780-01 11 74985212 74985212 G A ARRB1 Silent p.L274L 0.32 TCGA-A6-6780-01 11 8246161 8246161 C T LMO1 3'UTR 0.37 TCGA-A6-6780-01 11 82536061 82536061 G A PRCP Missense_Mutation p.R481C 0.41 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 11 837967 837967 C T CD151 Missense_Mutation p.T214I 0.27 deleterious(0.04) benign(0.01) TCGA-A6-6780-01 11 86521383 86521384 - G PRSS23 3'UTR 0.22 TCGA-A6-6780-01 11 9192463 9192463 G A DENND5A Intron 0.43 TCGA-A6-6780-01 11 94281281 94281281 T - FUT4 3'UTR 0.20 TCGA-A6-6780-01 11 95825257 95825257 T C MAML2 Silent p.Q646Q 0.07 TCGA-A6-6780-01 11 96126441 96126441 T - JRKL 3'UTR 0.23 TCGA-A6-6780-01 11 99932104 99932104 C A CNTN5 Missense_Mutation p.R381S 0.47 deleterious(0.02) probably_damaging(0.909) TCGA-A6-6780-01 12 100041976 100041976 G A FAM71C Silent p.P8P 0.31 TCGA-A6-6780-01 12 101551018 101551018 T C SLC5A8 3'UTR 0.56 TCGA-A6-6780-01 12 101598307 101598307 A G SLC5A8 Missense_Mutation p.C130R 0.28 deleterious(0.01) possibly_damaging(0.722) TCGA-A6-6780-01 12 101870604 101870604 A G SPIC Splice_Site 0.26 TCGA-A6-6780-01 12 10373090 10373090 A G GABARAPL1 Missense_Mutation p.D74G 0.20 deleterious(0.01) benign(0.431) TCGA-A6-6780-01 12 103981152 103981152 C T STAB2 5'UTR 0.34 TCGA-A6-6780-01 12 104089582 104089582 C T STAB2 Missense_Mutation p.A1181V 0.33 deleterious(0.02) probably_damaging(1) TCGA-A6-6780-01 12 104373687 104373688 - A TDG Frame_Shift_Ins p.S85Ifs*19 0.34 TCGA-A6-6780-01 12 105150949 105150949 A G CHST11 Missense_Mutation p.K143E 0.55 tolerated(0.24) benign(0.061) TCGA-A6-6780-01 12 10599223 10599223 A G KLRC1 Missense_Mutation p.V210A 0.49 tolerated(0.16) benign(0.049) TCGA-A6-6780-01 12 107090196 107090196 C T RFX4 Missense_Mutation p.P278S 0.05 deleterious(0.02) possibly_damaging(0.723) TCGA-A6-6780-01 12 108011162 108011162 C - BTBD11 Frame_Shift_Del p.Q729Rfs*4 0.31 TCGA-A6-6780-01 12 108091334 108091334 G A PWP1 Missense_Mutation p.G235E 0.05 deleterious(0) possibly_damaging(0.85) TCGA-A6-6780-01 12 108134743 108134743 G A PRDM4 Missense_Mutation p.T635I 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-A6-6780-01 12 110206976 110206976 C T FAM222A Silent p.N414N 0.44 TCGA-A6-6780-01 12 11061098 11061098 T C TAS2R13 Missense_Mutation p.E267G 0.24 tolerated(0.42) benign(0.102) TCGA-A6-6780-01 12 110781183 110781183 A G ATP2A2 Missense_Mutation p.N822S 0.34 tolerated(0.98) benign(0.01) TCGA-A6-6780-01 12 11090929 11090929 G A TAS2R14 Missense_Mutation p.S293L 0.23 tolerated(0.21) benign(0.147) TCGA-A6-6780-01 12 110977695 110977695 T C PPTC7 Missense_Mutation p.T220A 0.48 tolerated(0.07) benign(0.439) TCGA-A6-6780-01 12 111800904 111800904 G T FAM109A Missense_Mutation p.R123S 0.58 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 12 112193476 112193476 C T ACAD10 Missense_Mutation p.A1020V 0.22 deleterious(0) benign(0.428) TCGA-A6-6780-01 12 112451247 112451247 T C ERP29 5'UTR 0.23 TCGA-A6-6780-01 12 112491379 112491380 - A NAA25 Frame_Shift_Ins p.H571Sfs*21 0.17 TCGA-A6-6780-01 12 113900949 113900949 G A LHX5 3'UTR 0.19 TCGA-A6-6780-01 12 113906179 113906179 G A LHX5 Missense_Mutation p.P143L 0.52 deleterious(0) benign(0.103) TCGA-A6-6780-01 12 117768729 117768729 C A NOS1 Missense_Mutation p.G49V 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-6780-01 12 117977557 117977557 A G KSR2 Missense_Mutation p.C552R 0.15 tolerated(0.56) benign(0.063) TCGA-A6-6780-01 12 12006446 12006447 CT - ETV6 Frame_Shift_Del p.S139Yfs*14 0.24 TCGA-A6-6780-01 12 120510321 120510321 C G CCDC64 Missense_Mutation p.L366V 0.29 tolerated(0.16) probably_damaging(0.998) TCGA-A6-6780-01 12 120899695 120899703 TCTTCTTTA CTTCTTT SRSF9 3'UTR 0.12 TCGA-A6-6780-01 12 121891053 121891053 C T KDM2B Missense_Mutation p.R610Q 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-A6-6780-01 12 123200725 123200725 C A HCAR3 Missense_Mutation p.R187L 0.48 tolerated(0.35) possibly_damaging(0.487) TCGA-A6-6780-01 12 123950104 123950104 C A SNRNP35 Missense_Mutation p.P11H 0.48 deleterious(0.03) probably_damaging(0.994) TCGA-A6-6780-01 12 124414321 124414321 G A DNAH10OS 3'UTR 0.47 TCGA-A6-6780-01 12 12815210 12815210 T C GPR19 Missense_Mutation p.Y58C 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.471) TCGA-A6-6780-01 12 12940255 12940255 A G APOLD1 Missense_Mutation p.E170G 0.48 deleterious(0.01) possibly_damaging(0.579) TCGA-A6-6780-01 12 130856192 130856192 T - PIWIL1 3'UTR 0.12 TCGA-A6-6780-01 12 130922973 130922973 C T RIMBP2 Silent p.T514T 0.33 TCGA-A6-6780-01 12 132203999 132203999 A - SFSWAP Frame_Shift_Del p.N176Mfs*6 0.19 TCGA-A6-6780-01 12 132403858 132403858 G - ULK1 Frame_Shift_Del p.G873Afs*18 0.19 TCGA-A6-6780-01 12 132547126 132547126 G A EP400 Silent p.Q2738Q 0.24 TCGA-A6-6780-01 12 132589357 132589357 G A EP400NL Silent p.Q132Q 0.28 TCGA-A6-6780-01 12 133158765 133158765 C T FBRSL1 Missense_Mutation p.P748L 0.60 tolerated(0.06) benign(0.222) TCGA-A6-6780-01 12 14778829 14778829 T - GUCY2C Frame_Shift_Del p.N757Mfs*8 0.35 TCGA-A6-6780-01 12 18234035 18234035 A - RERGL 3'UTR 0.48 TCGA-A6-6780-01 12 1893123 1893123 G A ADIPOR2 Missense_Mutation p.A306T 0.26 tolerated(0.58) benign(0.01) TCGA-A6-6780-01 12 24048776 24048776 G A SOX5 Missense_Mutation p.T74M 0.35 tolerated_low_confidence(0.14) benign(0.007) TCGA-A6-6780-01 12 25267617 25267617 T C CASC1 Silent p.V528V 0.04 TCGA-A6-6780-01 12 2721232 2721232 G A CACNA1C Intron 0.47 TCGA-A6-6780-01 12 300378 300378 C T SLC6A12 Splice_Site p.X568_splice 0.30 TCGA-A6-6780-01 12 30814201 30814201 C A IPO8 Splice_Site p.X586_splice 0.23 TCGA-A6-6780-01 12 31242049 31242049 C T DDX11 Silent p.G252G 0.04 TCGA-A6-6780-01 12 39711942 39711942 G A KIF21A Missense_Mutation p.R1281C 0.53 deleterious(0.03) benign(0.014) TCGA-A6-6780-01 12 40927082 40927082 G A MUC19 Intron 0.16 TCGA-A6-6780-01 12 40963561 40963561 G A MUC19 3'UTR 0.23 TCGA-A6-6780-01 12 416204 416204 C T KDM5A Missense_Mutation p.V1328M 0.21 tolerated(0.13) benign(0.003) TCGA-A6-6780-01 12 45567090 45567090 C T PLEKHA8P1 RNA 0.29 TCGA-A6-6780-01 12 48144929 48144929 G A RAPGEF3 Silent p.P191P 0.21 TCGA-A6-6780-01 12 4923415 4923415 A T KCNA6 3'UTR 0.29 TCGA-A6-6780-01 12 49427545 49427545 G A KMT2D Missense_Mutation p.P3648L 0.19 benign(0.024) TCGA-A6-6780-01 12 49522175 49522175 G A TUBA1B Missense_Mutation p.R308C 0.26 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-A6-6780-01 12 5020442 5020442 G A KCNA1 5'UTR 0.16 TCGA-A6-6780-01 12 51080365 51080365 G A DIP2B Missense_Mutation p.R484Q 0.28 tolerated(0.12) benign(0.086) TCGA-A6-6780-01 12 51236842 51236842 G C TMPRSS12 Missense_Mutation p.G32A 0.20 tolerated_low_confidence(0.4) benign(0.003) TCGA-A6-6780-01 12 53011989 53011989 A G KRT73 Missense_Mutation p.V107A 0.23 deleterious(0) probably_damaging(0.948) TCGA-A6-6780-01 12 53162748 53162748 C T KRT76 Missense_Mutation p.G556S 0.20 tolerated(1) unknown(0) TCGA-A6-6780-01 12 53428410 53428410 G A EIF4B Missense_Mutation p.R408Q 0.31 tolerated(0.06) benign(0.18) TCGA-A6-6780-01 12 53552328 53552330 GAG - CSAD In_Frame_Del p.L510del 0.18 TCGA-A6-6780-01 12 53825087 53825087 C A AMHR2 Missense_Mutation p.P518T 0.20 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-A6-6780-01 12 54763886 54763886 A G ZNF385A 3'UTR 0.20 TCGA-A6-6780-01 12 54903733 54903733 C - NCKAP1L Frame_Shift_Del p.P235Qfs*3 0.32 TCGA-A6-6780-01 12 56115024 56115024 G A RDH5 Missense_Mutation p.R19K 0.57 tolerated(0.06) possibly_damaging(0.831) TCGA-A6-6780-01 12 56536652 56536652 G T ESYT1 Missense_Mutation p.Q984H 0.23 deleterious(0.05) probably_damaging(0.993) TCGA-A6-6780-01 12 56817159 56817159 G A TIMELESS Missense_Mutation p.R731W 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 12 56994554 56994555 - G BAZ2A Frame_Shift_Ins p.K1507Qfs*26 0.22 TCGA-A6-6780-01 12 57039661 57039661 A G ATP5B Silent p.A29A 0.06 TCGA-A6-6780-01 12 57114538 57114538 T C NACA Missense_Mutation p.Q259R 0.47 deleterious_low_confidence(0) benign(0.145) TCGA-A6-6780-01 12 57554843 57554843 T C LRP1 Missense_Mutation p.V716A 0.19 benign(0.214) TCGA-A6-6780-01 12 57594574 57594574 G T LRP1 Missense_Mutation p.D3401Y 0.25 probably_damaging(1) TCGA-A6-6780-01 12 58007449 58007450 - G ARHGEF25 Intron 0.17 TCGA-A6-6780-01 12 58009348 58009348 C T ARHGEF25 Silent p.T403T 0.49 TCGA-A6-6780-01 12 58024994 58024994 G T B4GALNT1 Silent p.A124A 0.25 TCGA-A6-6780-01 12 58114571 58114571 C T OS9 Missense_Mutation p.P628L 0.28 tolerated(0.19) benign(0.018) TCGA-A6-6780-01 12 6103274 6103274 G A VWF Missense_Mutation p.R2118W 0.66 deleterious(0) benign(0.037) TCGA-A6-6780-01 12 63544480 63544480 C T AVPR1A Missense_Mutation p.R46H 0.36 deleterious(0) probably_damaging(0.996) TCGA-A6-6780-01 12 64383808 64383808 C T SRGAP1 Missense_Mutation p.R128W 0.17 deleterious(0) probably_damaging(0.932) TCGA-A6-6780-01 12 64536489 64536489 A - SRGAP1 3'UTR 0.33 TCGA-A6-6780-01 12 66357060 66357060 C T HMGA2 Silent p.A106A 0.30 TCGA-A6-6780-01 12 6690748 6690748 A G CHD4 Intron 0.28 TCGA-A6-6780-01 12 6839866 6839866 C T COPS7A Missense_Mutation p.T223M 0.24 deleterious(0.01) possibly_damaging(0.836) TCGA-A6-6780-01 12 69051000 69051000 A G RAP1B Intron 0.21 TCGA-A6-6780-01 12 69158711 69158711 A - SLC35E3 3'UTR 0.21 TCGA-A6-6780-01 12 70737928 70737928 C T CNOT2 Silent p.G437G 0.19 TCGA-A6-6780-01 12 71533490 71533490 C T TSPAN8 Splice_Site p.X87_splice 0.50 TCGA-A6-6780-01 12 7177857 7177857 C - C1S Frame_Shift_Del p.Q658Sfs*11 0.16 TCGA-A6-6780-01 12 74686134 74686134 C T RP11-81H3.2 RNA 0.18 TCGA-A6-6780-01 12 74933956 74933956 T - ATXN7L3B 3'UTR 0.17 TCGA-A6-6780-01 12 74934090 74934090 T G ATXN7L3B 3'UTR 0.25 TCGA-A6-6780-01 12 75601519 75601519 G A KCNC2 Missense_Mutation p.A82V 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.798) TCGA-A6-6780-01 12 76739487 76739487 G A BBS10 3'UTR 0.17 TCGA-A6-6780-01 12 86198990 86198990 A G RASSF9 Silent p.I266I 0.49 TCGA-A6-6780-01 12 86373963 86373963 T C MGAT4C Missense_Mutation p.I181V 0.25 tolerated(0.16) benign(0.001) TCGA-A6-6780-01 12 9230383 9230383 T C A2M Missense_Mutation p.T1064A 0.20 tolerated(0.26) benign(0.014) TCGA-A6-6780-01 12 9302194 9302194 C G PZP Missense_Mutation p.E1463D 0.24 tolerated(0.06) probably_damaging(0.985) TCGA-A6-6780-01 12 94697810 94697810 G A PLXNC1 Missense_Mutation p.V1529I 0.23 tolerated(0.26) benign(0.015) TCGA-A6-6780-01 12 94975824 94975824 C A TMCC3 Missense_Mutation p.G190V 0.29 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 12 99007999 99007999 T - IKBIP Frame_Shift_Del p.K139Nfs*5 0.13 TCGA-A6-6780-01 13 100020087 100020087 G A UBAC2 Missense_Mutation p.R285Q 0.36 tolerated(0.11) benign(0.005) TCGA-A6-6780-01 13 101717782 101717782 G A NALCN Silent p.G1526G 0.14 TCGA-A6-6780-01 13 103514048 103514048 T G BIVM-ERCC5 Missense_Mutation p.H714Q 0.29 deleterious(0) probably_damaging(0.944) TCGA-A6-6780-01 13 108518516 108518518 GCC - FAM155A In_Frame_Del p.G143del 0.27 TCGA-A6-6780-01 13 111973034 111973034 A - TEX29 5'UTR 0.30 TCGA-A6-6780-01 13 114202753 114202753 G A TMCO3 Missense_Mutation p.V636I 0.42 tolerated(1) benign(0.001) TCGA-A6-6780-01 13 114525017 114525017 A T GAS6 Missense_Mutation p.V599E 0.36 tolerated(0.1) benign(0.235) TCGA-A6-6780-01 13 115037794 115037794 T G CDC16 Missense_Mutation p.L580R 0.31 deleterious_low_confidence(0.01) benign(0.241) TCGA-A6-6780-01 13 23911828 23911829 - A SACS Frame_Shift_Ins p.P2063Sfs*7 0.24 TCGA-A6-6780-01 13 23912473 23912473 C - SACS Frame_Shift_Del p.A1848Qfs*2 0.11 TCGA-A6-6780-01 13 25745482 25745482 C - AMER2 Frame_Shift_Del p.S94Afs*8 0.22 TCGA-A6-6780-01 13 26620890 26620890 A G SHISA2 Missense_Mutation p.Y217H 0.06 tolerated(0.11) probably_damaging(0.972) TCGA-A6-6780-01 13 28014454 28014454 T C MTIF3 Silent p.P44P 0.35 TCGA-A6-6780-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.07 TCGA-A6-6780-01 13 28519646 28519646 A G ATP5EP2 3'UTR 0.41 TCGA-A6-6780-01 13 28964199 28964199 G A FLT1 Missense_Mutation p.T568M 0.30 tolerated(0.11) possibly_damaging(0.833) TCGA-A6-6780-01 13 31037687 31037687 T G HMGB1 Missense_Mutation p.K44T 0.42 deleterious(0.02) possibly_damaging(0.775) TCGA-A6-6780-01 13 33327521 33327521 C A PDS5B Missense_Mutation p.L930I 0.44 deleterious(0.02) probably_damaging(0.955) TCGA-A6-6780-01 13 35751169 35751169 A T NBEA Missense_Mutation p.I1531F 0.34 deleterious(0) benign(0.288) TCGA-A6-6780-01 13 37269860 37269860 G T SERTM1 3'UTR 0.32 TCGA-A6-6780-01 13 41766749 41766749 T C KBTBD7 Missense_Mutation p.N549D 0.06 tolerated(1) benign(0.003) TCGA-A6-6780-01 13 42404685 42404685 A G VWA8 Silent p.S560S 0.27 TCGA-A6-6780-01 13 43918767 43918767 G A ENOX1 Missense_Mutation p.R315C 0.37 deleterious(0.01) possibly_damaging(0.792) TCGA-A6-6780-01 13 45589672 45589672 A G GPALPP1 Missense_Mutation p.T216A 0.35 tolerated(0.16) benign(0.027) TCGA-A6-6780-01 13 48835286 48835286 C T ITM2B Missense_Mutation p.R243C 0.38 deleterious(0) possibly_damaging(0.877) TCGA-A6-6780-01 13 49089383 49089383 G T RCBTB2 Missense_Mutation p.L103I 0.05 tolerated(0.2) probably_damaging(0.996) TCGA-A6-6780-01 13 49841776 49841776 C A CDADC1 Missense_Mutation p.P194H 0.37 deleterious(0) possibly_damaging(0.889) TCGA-A6-6780-01 13 49884960 49884960 G A CAB39L Missense_Mutation p.T335M 0.31 deleterious(0.02) benign(0.004) TCGA-A6-6780-01 13 50051110 50051110 T A SETDB2 Nonsense_Mutation p.Y280* 0.49 TCGA-A6-6780-01 13 50205655 50205655 G A ARL11 3'UTR 0.32 TCGA-A6-6780-01 13 50589231 50589231 A T TRIM13 3'Flank 0.41 TCGA-A6-6780-01 13 52026733 52026733 G A INTS6 5'UTR 0.24 TCGA-A6-6780-01 13 52657464 52657464 T - NEK5 Frame_Shift_Del p.T502Pfs*4 0.17 TCGA-A6-6780-01 13 53421008 53421008 G A PCDH8 Missense_Mutation p.R522C 0.14 deleterious(0) possibly_damaging(0.856) TCGA-A6-6780-01 13 60737751 60737751 G - DIAPH3 Frame_Shift_Del p.E51Rfs*12 0.28 TCGA-A6-6780-01 13 76379755 76379755 G A LMO7 Missense_Mutation p.R119H 0.38 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 13 77779614 77779614 A C MYCBP2 Missense_Mutation p.F1199V 0.37 probably_damaging(0.996) TCGA-A6-6780-01 13 78317282 78317282 C A SLAIN1 Intron 0.31 TCGA-A6-6780-01 13 78492538 78492538 A G EDNRB Silent p.G147G 0.37 TCGA-A6-6780-01 13 80095013 80095013 G A NDFIP2 Silent p.P130P 0.36 TCGA-A6-6780-01 13 95364117 95364117 G A SOX21 Missense_Mutation p.R63C 0.34 deleterious(0) probably_damaging(0.936) TCGA-A6-6780-01 14 102445673 102445673 G A DYNC1H1 Missense_Mutation p.R121H 0.34 benign(0.037) TCGA-A6-6780-01 14 102461367 102461367 G A DYNC1H1 Silent p.E1126E 0.33 TCGA-A6-6780-01 14 102973458 102973458 G A ANKRD9 Missense_Mutation p.R257C 0.43 tolerated(0.2) possibly_damaging(0.586) TCGA-A6-6780-01 14 103574080 103574080 G A EXOC3L4 Missense_Mutation p.S605N 0.06 tolerated(0.68) benign(0.046) TCGA-A6-6780-01 14 103958250 103958250 G A MARK3 Missense_Mutation p.A575T 0.50 tolerated(0.14) probably_damaging(0.996) TCGA-A6-6780-01 14 104618524 104618524 C - KIF26A Frame_Shift_Del p.H156Mfs*52 0.30 TCGA-A6-6780-01 14 105270740 105270740 T C ZBTB42 3'UTR 0.39 TCGA-A6-6780-01 14 105414239 105414239 C T AHNAK2 Missense_Mutation p.G2517R 0.29 benign(0.001) TCGA-A6-6780-01 14 105915737 105915737 G A MTA1 Missense_Mutation p.G78S 0.20 tolerated(0.14) benign(0.007) TCGA-A6-6780-01 14 19563232 19563232 T C POTEG Intron 0.46 TCGA-A6-6780-01 14 20344623 20344623 T G OR4K2 Missense_Mutation p.L66R 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 14 20915659 20915659 G T OSGEP Missense_Mutation p.A297E 0.37 deleterious(0) probably_damaging(0.978) TCGA-A6-6780-01 14 21550228 21550228 C T ARHGEF40 Silent p.D1067D 0.21 TCGA-A6-6780-01 14 23240482 23240482 A - OXA1L Frame_Shift_Del p.N431Mfs*4 0.25 TCGA-A6-6780-01 14 23315257 23315257 G A MMP14 3'UTR 0.37 TCGA-A6-6780-01 14 23634555 23634555 C T SLC7A8 Silent p.P149P 0.30 TCGA-A6-6780-01 14 23848787 23848787 G A CMTM5 3'UTR 0.40 TCGA-A6-6780-01 14 23865976 23865976 C T MYH6 Missense_Mutation p.S740N 0.37 tolerated(0.3) benign(0.014) TCGA-A6-6780-01 14 23874548 23874548 T C MYH6 Missense_Mutation p.K129R 0.30 tolerated(0.06) benign(0.02) TCGA-A6-6780-01 14 23886413 23886413 C T MYH7 Missense_Mutation p.E1490K 0.39 deleterious(0.01) probably_damaging(1) TCGA-A6-6780-01 14 23889280 23889280 C T MYH7 Missense_Mutation p.R1167H 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 14 24846939 24846944 CCCCAG - NFATC4 3'UTR 0.22 TCGA-A6-6780-01 14 24909579 24909579 G A SDR39U1 Silent p.L198L 0.22 TCGA-A6-6780-01 14 34270134 34270134 A C NPAS3 Missense_Mutation p.H874P 0.20 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-A6-6780-01 14 36004286 36004286 C T INSM2 Silent p.F276F 0.26 TCGA-A6-6780-01 14 39771401 39771401 T C CTAGE5 Silent p.D293D 0.19 TCGA-A6-6780-01 14 45431739 45431739 G - FAM179B Frame_Shift_Del p.G40Afs*3 0.33 TCGA-A6-6780-01 14 45636304 45636304 A G FANCM Missense_Mutation p.Y647C 0.55 deleterious(0.02) benign(0.031) TCGA-A6-6780-01 14 53529890 53529890 A G DDHD1 Silent p.L513L 0.27 TCGA-A6-6780-01 14 55369175 55369175 A G GCH1 Silent p.P69P 0.17 TCGA-A6-6780-01 14 55512401 55512402 - T SOCS4 3'UTR 0.23 TCGA-A6-6780-01 14 59113023 59113023 C T DACT1 Missense_Mutation p.P561L 0.53 deleterious(0.03) benign(0.06) TCGA-A6-6780-01 14 62187187 62187187 T G HIF1A Silent p.A65A 0.23 TCGA-A6-6780-01 14 68008639 68008639 C A PLEKHH1 Missense_Mutation p.L19M 0.27 tolerated(0.16) benign(0.11) TCGA-A6-6780-01 14 69256446 69256446 G - ZFP36L1 Frame_Shift_Del p.P274Rfs*33 0.21 TCGA-A6-6780-01 14 69726964 69726964 G A GALNT16 5'UTR 0.40 TCGA-A6-6780-01 14 70513090 70513090 A G SLC8A3 Intron 0.28 TCGA-A6-6780-01 14 71209191 71209191 G A MAP3K9 Missense_Mutation p.R482W 0.23 deleterious(0) probably_damaging(0.96) TCGA-A6-6780-01 14 73407027 73407029 AGA - DCAF4 In_Frame_Del p.K99del 0.47 TCGA-A6-6780-01 14 73739352 73739352 G A PAPLN Missense_Mutation p.A1246T 0.29 deleterious(0.05) benign(0.128) TCGA-A6-6780-01 14 74823937 74823937 G A VRTN Missense_Mutation p.A151T 0.20 tolerated(0.14) benign(0.035) TCGA-A6-6780-01 14 75376493 75376493 G T RPS6KL1 Silent p.P341P 0.26 TCGA-A6-6780-01 14 76249648 76249648 A C TTLL5 Missense_Mutation p.I921L 0.05 tolerated(0.66) benign(0.001) TCGA-A6-6780-01 14 77239609 77239609 C T VASH1 Intron 0.26 TCGA-A6-6780-01 14 77493800 77493800 C T IRF2BPL Silent p.Q112Q 0.29 TCGA-A6-6780-01 14 77493860 77493860 C T IRF2BPL Silent p.A92A 0.33 TCGA-A6-6780-01 14 77494245 77494246 - G IRF2BPL 5'UTR 0.36 TCGA-A6-6780-01 14 78397895 78397896 - C ADCK1 Frame_Shift_Ins p.Q416Pfs*27 0.25 TCGA-A6-6780-01 14 79432447 79432447 C T NRXN3 Silent p.S452S 0.39 TCGA-A6-6780-01 14 93170685 93170685 G A LGMN Silent p.H427H 0.39 TCGA-A6-6780-01 14 93681303 93681303 T A UBR7 Missense_Mutation p.V157D 0.35 deleterious(0) probably_damaging(0.996) TCGA-A6-6780-01 14 93708824 93708824 G A BTBD7 Missense_Mutation p.T1065I 0.35 tolerated_low_confidence(0.09) probably_damaging(0.991) TCGA-A6-6780-01 14 96761462 96761462 C A ATG2B Missense_Mutation p.R1754M 0.30 tolerated(0.14) probably_damaging(0.974) TCGA-A6-6780-01 15 100331846 100331846 G A AC090825.1 5'Flank 0.19 TCGA-A6-6780-01 15 23811512 23811512 G A MKRN3 Missense_Mutation p.A195T 0.54 deleterious(0.01) possibly_damaging(0.759) TCGA-A6-6780-01 15 23931488 23931488 G A NDN Nonsense_Mutation p.R293* 0.42 TCGA-A6-6780-01 15 30010887 30010887 G A TJP1 Silent p.S1153S 0.05 TCGA-A6-6780-01 15 32926204 32926204 C T ARHGAP11A Missense_Mutation p.R436C 0.60 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 15 34078079 34078079 C T RYR3 Missense_Mutation p.T3162I 0.52 probably_damaging(0.986) TCGA-A6-6780-01 15 40235602 40235602 A - EIF2AK4 Frame_Shift_Del p.N94Mfs*13 0.30 TCGA-A6-6780-01 15 42049992 42049992 T C MGA Silent p.C2382C 0.27 TCGA-A6-6780-01 15 42278090 42278090 G A PLA2G4E Nonsense_Mutation p.R717* 0.57 TCGA-A6-6780-01 15 42630586 42630586 G T GANC Splice_Site p.X581_splice 0.45 TCGA-A6-6780-01 15 43525401 43525401 G A TGM5 Silent p.D717D 0.56 TCGA-A6-6780-01 15 45007619 45007619 A G B2M Splice_Site p.X23_splice 0.50 TCGA-A6-6780-01 15 45464124 45464124 G A SHF Missense_Mutation p.R348C 0.58 deleterious(0) probably_damaging(0.996) TCGA-A6-6780-01 15 49171044 49171045 - A EID1 3'UTR 0.39 TCGA-A6-6780-01 15 50534621 50534621 A C HDC Missense_Mutation p.S609A 0.65 tolerated_low_confidence(0.3) benign(0.002) TCGA-A6-6780-01 15 52011644 52011644 A G SCG3 Missense_Mutation p.Q443R 0.52 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-A6-6780-01 15 52230423 52230425 TCT - LEO1 In_Frame_Del p.E643del 0.37 TCGA-A6-6780-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.35 TCGA-A6-6780-01 15 59510143 59510143 G A MYO1E Missense_Mutation p.R352W 0.64 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 15 63920927 63920927 G A HERC1 Missense_Mutation p.R4352C 0.50 probably_damaging(0.999) TCGA-A6-6780-01 15 63970540 63970540 G A HERC1 Missense_Mutation p.R2192C 0.14 probably_damaging(1) TCGA-A6-6780-01 15 64386128 64386128 T C FAM96A 5'UTR 0.56 TCGA-A6-6780-01 15 65849095 65849095 C A PTPLAD1 Missense_Mutation p.Q75K 0.24 tolerated(0.09) possibly_damaging(0.868) TCGA-A6-6780-01 15 66249910 66249910 C - MEGF11 Frame_Shift_Del p.G421Afs*41 0.27 TCGA-A6-6780-01 15 68624714 68624714 G A ITGA11 Missense_Mutation p.R510C 0.24 deleterious(0.02) possibly_damaging(0.69) TCGA-A6-6780-01 15 68643716 68643716 T G ITGA11 Silent p.G258G 0.27 TCGA-A6-6780-01 15 72063445 72063445 C T THSD4 Missense_Mutation p.R938W 0.33 deleterious(0) probably_damaging(0.993) TCGA-A6-6780-01 15 72432440 72432440 A C SENP8 Missense_Mutation p.N159T 0.39 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 15 74882321 74882321 C T ARID3B Silent p.S286S 0.39 TCGA-A6-6780-01 15 75499516 75499517 TG - C15orf39 Frame_Shift_Del p.L376Qfs*8 0.32 TCGA-A6-6780-01 15 75641603 75641603 G A NEIL1 Silent p.R119R 0.32 TCGA-A6-6780-01 15 76673777 76673777 G A SCAPER Missense_Mutation p.A1216V 0.34 tolerated(0.22) probably_damaging(0.959) TCGA-A6-6780-01 15 78566734 78566736 AGA - DNAJA4 In_Frame_Del p.K236del 0.34 TCGA-A6-6780-01 15 79589613 79589614 AG - ANKRD34C 3'UTR 0.34 TCGA-A6-6780-01 15 81173393 81173394 - T KIAA1199 Frame_Shift_Ins p.E181* 0.25 TCGA-A6-6780-01 15 81591803 81591803 C T IL16 Silent p.D712D 0.30 TCGA-A6-6780-01 15 81616399 81616399 G C STARD5 Silent p.A14A 0.34 TCGA-A6-6780-01 15 83686584 83686584 T - BTBD1 3'UTR 0.46 TCGA-A6-6780-01 15 83791569 83791569 C A TM6SF1 Missense_Mutation p.P181H 0.38 deleterious(0) probably_damaging(0.961) TCGA-A6-6780-01 15 83932346 83932346 T G BNC1 Missense_Mutation p.I553L 0.32 tolerated(0.42) benign(0.002) TCGA-A6-6780-01 15 85401071 85401071 C A ALPK3 Silent p.P1236P 0.30 TCGA-A6-6780-01 15 86284684 86284684 A G AKAP13 Silent p.A2676A 0.35 TCGA-A6-6780-01 15 89173547 89173547 C T AEN 3'UTR 0.40 TCGA-A6-6780-01 15 90286595 90286595 G A WDR93 Silent p.S678S 0.21 TCGA-A6-6780-01 15 90346941 90346941 G A ANPEP Silent p.P458P 0.26 TCGA-A6-6780-01 15 90611261 90611261 C T ZNF710 Missense_Mutation p.R298C 0.35 deleterious(0) probably_damaging(0.99) TCGA-A6-6780-01 15 90771926 90771926 G A SEMA4B 3'UTR 0.21 TCGA-A6-6780-01 15 91424957 91424957 G - FURIN Frame_Shift_Del p.V747* 0.30 TCGA-A6-6780-01 16 1033873 1033873 G A SOX8 Missense_Mutation p.A190T 0.38 tolerated(0.4) benign(0.009) TCGA-A6-6780-01 16 1033899 1033899 C T SOX8 Silent p.G198G 0.36 TCGA-A6-6780-01 16 11272464 11272464 C T CLEC16A Silent p.L1027L 0.31 TCGA-A6-6780-01 16 12618563 12618563 C T SNX29 Missense_Mutation p.A728V 0.36 deleterious(0.03) possibly_damaging(0.838) TCGA-A6-6780-01 16 1420137 1420137 G T UNKL Missense_Mutation p.P524T 0.42 deleterious(0.05) benign(0.021) TCGA-A6-6780-01 16 1706849 1706849 G A CRAMP1L Silent p.K697K 0.30 TCGA-A6-6780-01 16 1741846 1741846 G A HN1L Missense_Mutation p.G66S 0.35 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 16 19127925 19127925 T C ITPRIPL2 3'UTR 0.34 TCGA-A6-6780-01 16 19718372 19718372 G A KNOP1 Nonsense_Mutation p.Q413* 0.37 TCGA-A6-6780-01 16 2014275 2014275 A G RPS2 Splice_Site p.X89_splice 0.28 TCGA-A6-6780-01 16 2079697 2079697 C T SLC9A3R2 Nonsense_Mutation p.R110* 0.09 TCGA-A6-6780-01 16 20999068 20999068 C T DNAH3 Missense_Mutation p.D2277N 0.29 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 16 21065751 21065751 G A DNAH3 Silent p.I1343I 0.35 TCGA-A6-6780-01 16 21278990 21278990 C T CRYM Silent p.R186R 0.37 TCGA-A6-6780-01 16 2159676 2159676 G A PKD1 Missense_Mutation p.T1831M 0.23 benign(0.067) TCGA-A6-6780-01 16 22269821 22269821 G T EEF2K Missense_Mutation p.A346S 0.25 tolerated(0.18) benign(0.347) TCGA-A6-6780-01 16 22343402 22343402 A T POLR3E Missense_Mutation p.I656F 0.08 deleterious(0.04) benign(0.288) TCGA-A6-6780-01 16 22358879 22358879 G A CDR2 Nonsense_Mutation p.R258* 0.19 TCGA-A6-6780-01 16 23692253 23692253 C T PLK1 Missense_Mutation p.T199I 0.31 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 16 23999908 23999908 C T PRKCB Silent p.S95S 0.32 TCGA-A6-6780-01 16 24560457 24560457 T A RBBP6 Intron 0.21 TCGA-A6-6780-01 16 24975608 24975608 G T ARHGAP17 Silent p.S161S 0.04 TCGA-A6-6780-01 16 27232004 27232004 G A KDM8 Missense_Mutation p.V440M 0.31 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 16 27476711 27476711 G A GTF3C1 Missense_Mutation p.A1742V 0.27 tolerated(0.82) benign(0.007) TCGA-A6-6780-01 16 28187233 28187234 - A XPO6 Frame_Shift_Ins p.T131Yfs*2 0.21 TCGA-A6-6780-01 16 28507754 28507754 C A APOBR Missense_Mutation p.D464E 0.34 tolerated(0.25) possibly_damaging(0.621) TCGA-A6-6780-01 16 28607468 28607468 G A SULT1A2 5'UTR 0.42 TCGA-A6-6780-01 16 29115701 29115701 G A CTB-134H23.3 RNA 0.57 TCGA-A6-6780-01 16 29821006 29821006 G - MAZ Frame_Shift_Del p.A478Pfs*47 0.37 TCGA-A6-6780-01 16 2987296 2987296 G A FLYWCH1 Missense_Mutation p.R562H 0.24 deleterious(0.04) probably_damaging(1) TCGA-A6-6780-01 16 29994127 29994127 C T TAOK2 Missense_Mutation p.R302W 0.39 deleterious(0) possibly_damaging(0.799) TCGA-A6-6780-01 16 30012268 30012268 G - INO80E Frame_Shift_Del p.G103Afs*28 0.33 TCGA-A6-6780-01 16 30409083 30409083 G A ZNF48 Missense_Mutation p.R171Q 0.34 tolerated(0.14) benign(0.007) TCGA-A6-6780-01 16 30662942 30662942 C - PRR14 5'UTR 0.10 TCGA-A6-6780-01 16 30680217 30680217 T C FBRS Silent p.P761P 0.30 TCGA-A6-6780-01 16 30750222 30750222 T G SRCAP Missense_Mutation p.I2954S 0.25 unknown(0) TCGA-A6-6780-01 16 31151942 31151942 G - PRSS36 Frame_Shift_Del p.L680Wfs*6 0.24 TCGA-A6-6780-01 16 31336027 31336027 T C ITGAM Missense_Mutation p.V739A 0.30 tolerated(0.08) possibly_damaging(0.492) TCGA-A6-6780-01 16 31447610 31447610 T A ZNF843 Silent p.S187S 0.36 TCGA-A6-6780-01 16 31489056 31489056 G T TGFB1I1 3'UTR 0.33 TCGA-A6-6780-01 16 3170253 3170253 A G ZNF205 Missense_Mutation p.K531R 0.32 tolerated(0.08) probably_damaging(0.998) TCGA-A6-6780-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.17 TCGA-A6-6780-01 16 336445 336445 C T PDIA2 Silent p.D404D 0.42 TCGA-A6-6780-01 16 3639972 3639972 G A SLX4 Missense_Mutation p.P1223S 0.38 tolerated(1) benign(0.003) TCGA-A6-6780-01 16 3652148 3652148 G A SLX4 Silent p.N307N 0.33 TCGA-A6-6780-01 16 3930034 3930034 G A CREBBP 5'UTR 0.28 TCGA-A6-6780-01 16 4245583 4245583 A C SRL Missense_Mutation p.I194S 0.31 deleterious(0) possibly_damaging(0.888) TCGA-A6-6780-01 16 4564112 4564112 G - CDIP1 Frame_Shift_Del p.P7Lfs*29 0.32 TCGA-A6-6780-01 16 4733878 4733878 G T MGRN1 Missense_Mutation p.Q521H 0.43 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-A6-6780-01 16 48295386 48295391 GAAGAT - LONP2 In_Frame_Del p.E265_D266del 0.21 TCGA-A6-6780-01 16 4934992 4934992 G A PPL Nonsense_Mutation p.R1222* 0.24 TCGA-A6-6780-01 16 50069429 50069429 A - CNEP1R1 3'UTR 0.17 TCGA-A6-6780-01 16 5083399 5083399 G A NAGPA Silent p.G139G 0.44 TCGA-A6-6780-01 16 55565871 55565871 A T LPCAT2 Missense_Mutation p.I230F 0.03 deleterious(0) probably_damaging(0.978) TCGA-A6-6780-01 16 57552141 57552141 G A CCDC102A Missense_Mutation p.R363W 0.39 deleterious(0.02) probably_damaging(0.972) TCGA-A6-6780-01 16 613724 613724 G A C16orf11 Missense_Mutation p.V144M 0.35 tolerated(0.22) benign(0.076) TCGA-A6-6780-01 16 65038639 65038639 C A CDH11 Missense_Mutation p.G45V 0.49 deleterious(0.04) possibly_damaging(0.762) TCGA-A6-6780-01 16 66436603 66436603 G C CDH5 Missense_Mutation p.R629P 0.37 tolerated(0.23) possibly_damaging(0.546) TCGA-A6-6780-01 16 66599879 66599879 A - CKLF Frame_Shift_Del p.K143Sfs*? 0.23 TCGA-A6-6780-01 16 67178264 67178264 A G C16orf70 Missense_Mutation p.H316R 0.35 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 16 67201666 67201666 G - HSF4 Frame_Shift_Del p.D302Mfs*17 0.40 TCGA-A6-6780-01 16 67325658 67325658 G - KCTD19 Frame_Shift_Del p.V768Wfs*38 0.27 TCGA-A6-6780-01 16 67478526 67478526 C T ATP6V0D1 Missense_Mutation p.C129Y 0.33 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 16 68002548 68002548 C A SLC12A4 Missense_Mutation p.G4C 0.50 unknown(0) TCGA-A6-6780-01 16 68845693 68845694 - A CDH1 Frame_Shift_Ins p.N315Kfs*6 0.22 TCGA-A6-6780-01 16 70543864 70543864 T C COG4 Missense_Mutation p.R267G 0.24 deleterious(0) probably_damaging(0.962) TCGA-A6-6780-01 16 70697920 70697920 G - MTSS1L Frame_Shift_Del p.P635Qfs*133 0.24 TCGA-A6-6780-01 16 71122358 71122358 C - HYDIN Frame_Shift_Del p.A506Pfs*47 0.17 TCGA-A6-6780-01 16 72830939 72830939 A T ZFHX3 Missense_Mutation p.V1881D 0.45 possibly_damaging(0.5) TCGA-A6-6780-01 16 74446109 74446109 G A CLEC18B Missense_Mutation p.R274W 0.13 deleterious(0) probably_damaging(0.981) TCGA-A6-6780-01 16 78011556 78011556 C T VAT1L Silent p.D408D 0.41 TCGA-A6-6780-01 16 836365 836365 T G RPUSD1 Missense_Mutation p.Q175P 0.28 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 16 84520667 84520667 T C TLDC1 Splice_Site p.X177_splice 0.11 TCGA-A6-6780-01 16 85839559 85839559 T G COX4I1 Intron 0.14 TCGA-A6-6780-01 16 88503002 88503002 C T ZNF469 Missense_Mutation p.R3014C 0.31 benign(0.232) TCGA-A6-6780-01 16 88802608 88802608 C T PIEZO1 Missense_Mutation p.R502H 0.28 tolerated(0.19) benign(0.002) TCGA-A6-6780-01 16 88870973 88870973 C T CDT1 Silent p.P83P 0.30 TCGA-A6-6780-01 16 88874746 88874746 G A CDT1 3'UTR 0.23 TCGA-A6-6780-01 16 88947194 88947194 C T CBFA2T3 Missense_Mutation p.V469M 0.40 tolerated(0.13) benign(0.011) TCGA-A6-6780-01 16 90109763 90109764 TG C GAS8 3'UTR 0.17 TCGA-A6-6780-01 17 10312761 10312761 C T MYH8 Missense_Mutation p.A578T 0.39 deleterious(0.05) possibly_damaging(0.737) TCGA-A6-6780-01 17 11806110 11806110 T G DNAH9 Missense_Mutation p.F3827L 0.34 benign(0.019) TCGA-A6-6780-01 17 1553124 1553124 C - RILP 5'UTR 0.31 TCGA-A6-6780-01 17 16329425 16329425 A G TRPV2 Missense_Mutation p.I313V 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-A6-6780-01 17 1639342 1639342 C T WDR81 Nonsense_Mutation p.R1779* 0.36 TCGA-A6-6780-01 17 17030120 17030120 T C MPRIP Silent p.P124P 0.28 TCGA-A6-6780-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.28 TCGA-A6-6780-01 17 17061910 17061910 A G MPRIP Missense_Mutation p.E547G 0.28 deleterious(0) probably_damaging(0.976) TCGA-A6-6780-01 17 1731217 1731217 C A SMYD4 Missense_Mutation p.Q24H 0.33 deleterious(0.01) possibly_damaging(0.764) TCGA-A6-6780-01 17 17699359 17699359 C - RAI1 Frame_Shift_Del p.Q1035Rfs*29 0.25 TCGA-A6-6780-01 17 18087550 18087550 T C ALKBH5 5'Flank 0.29 TCGA-A6-6780-01 17 18880216 18880216 C T SLC5A10 Missense_Mutation p.A299V 0.32 deleterious(0) possibly_damaging(0.864) TCGA-A6-6780-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.20 TCGA-A6-6780-01 17 21318733 21318733 G A KCNJ12 Missense_Mutation p.G27S 0.21 tolerated(0.77) benign(0.045) TCGA-A6-6780-01 17 2203910 2203910 C T SMG6 Missense_Mutation p.R46H 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-6780-01 17 2290637 2290637 C - MNT Frame_Shift_Del p.G436Vfs*20 0.24 TCGA-A6-6780-01 17 26962393 26962393 C T KIAA0100 Missense_Mutation p.A738T 0.39 tolerated(0.56) benign(0.003) TCGA-A6-6780-01 17 27076705 27076706 TC - TRAF4 3'UTR 0.40 TCGA-A6-6780-01 17 28613838 28613838 A G BLMH Silent p.N182N 0.46 TCGA-A6-6780-01 17 29164264 29164264 A - ATAD5 Frame_Shift_Del p.K671Nfs*36 0.24 TCGA-A6-6780-01 17 29231152 29231152 T - TEFM Frame_Shift_Del p.R143Efs*9 0.24 TCGA-A6-6780-01 17 30685658 30685658 A G ZNF207 Missense_Mutation p.Q102R 0.33 tolerated(0.1) benign(0.145) TCGA-A6-6780-01 17 30818043 30818043 T - CDK5R1 3'UTR 0.26 TCGA-A6-6780-01 17 32614848 32614848 A T CCL11 3'UTR 0.32 TCGA-A6-6780-01 17 33772747 33772748 - A SLFN13 Intron 0.25 TCGA-A6-6780-01 17 3431405 3431406 - G TRPV3 Frame_Shift_Ins p.A474Gfs*113 0.29 TCGA-A6-6780-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.28 TCGA-A6-6780-01 17 35736170 35736170 C A C17orf78 Missense_Mutation p.L81I 0.36 deleterious(0.01) possibly_damaging(0.822) TCGA-A6-6780-01 17 3628298 3628298 A - GSG2 Frame_Shift_Del p.K358Rfs*15 0.22 TCGA-A6-6780-01 17 36361791 36361791 C T RP11-1407O15.2 Missense_Mutation p.R185Q 0.17 TCGA-A6-6780-01 17 3716280 3716280 G A C17orf85 3'UTR 0.42 TCGA-A6-6780-01 17 37686994 37686994 G A CDK12 Missense_Mutation p.A1300T 0.27 possibly_damaging(0.692) TCGA-A6-6780-01 17 38183199 38183199 A G MED24 Missense_Mutation p.L540P 0.27 tolerated(0.13) probably_damaging(0.915) TCGA-A6-6780-01 17 38600104 38600104 C - IGFBP4 Frame_Shift_Del p.V42Wfs*52 0.35 TCGA-A6-6780-01 17 38609369 38609369 C T IGFBP4 Missense_Mutation p.A161V 0.29 tolerated(0.52) benign(0.002) TCGA-A6-6780-01 17 39538384 39538384 C T KRT34 Missense_Mutation p.A81T 0.37 tolerated(0.08) benign(0.086) TCGA-A6-6780-01 17 39991473 39991473 G A NT5C3B Nonsense_Mutation p.R55* 0.30 TCGA-A6-6780-01 17 40375459 40375459 T - STAT5B Frame_Shift_Del p.K164Sfs*17 0.25 TCGA-A6-6780-01 17 40467640 40467640 A - STAT3 3'UTR 0.38 TCGA-A6-6780-01 17 40557372 40557372 C T PTRF Missense_Mutation p.S169N 0.27 tolerated(0.14) benign(0.052) TCGA-A6-6780-01 17 41131224 41131224 T - PTGES3L-AARSD1 Frame_Shift_Del p.K127Rfs*45 0.25 TCGA-A6-6780-01 17 41152038 41152038 T C RPL27 Missense_Mutation p.M57T 0.34 tolerated(0.07) benign(0.027) TCGA-A6-6780-01 17 41234476 41234476 A G BRCA1 Silent p.S1434S 0.26 TCGA-A6-6780-01 17 41878982 41878982 C T MPP3 3'UTR 0.33 TCGA-A6-6780-01 17 42428819 42428819 T C GRN Silent p.P308P 0.31 TCGA-A6-6780-01 17 42453529 42453529 A G ITGA2B Missense_Mutation p.V791A 0.07 deleterious(0) probably_damaging(0.923) TCGA-A6-6780-01 17 4342988 4342988 A G SPNS3 Missense_Mutation p.S79G 0.30 tolerated(0.32) benign(0.02) TCGA-A6-6780-01 17 43481033 43481033 G A ARHGAP27 Silent p.G189G 0.31 TCGA-A6-6780-01 17 43506930 43506930 G A ARHGAP27 5'Flank 0.47 TCGA-A6-6780-01 17 43530851 43530851 C A PLEKHM1 Silent p.L789L 0.30 TCGA-A6-6780-01 17 4381930 4381930 C T SPNS3 Silent p.L393L 0.27 TCGA-A6-6780-01 17 44248772 44248772 A G KANSL1 Silent p.S246S 0.23 TCGA-A6-6780-01 17 4445098 4445098 A G MYBBP1A Missense_Mutation p.V1059A 0.43 tolerated(0.24) benign(0.142) TCGA-A6-6780-01 17 45008524 45008524 G A GOSR2 Missense_Mutation p.E52K 0.34 deleterious(0.01) possibly_damaging(0.661) TCGA-A6-6780-01 17 45377873 45377873 G - ITGB3 Frame_Shift_Del p.G649Efs*20 0.22 TCGA-A6-6780-01 17 4577909 4577909 G A PELP1 Missense_Mutation p.A493V 0.53 possibly_damaging(0.763) TCGA-A6-6780-01 17 4619327 4619327 A G ARRB2 Silent p.V38V 0.42 TCGA-A6-6780-01 17 46622031 46622031 T C HOXB2 Silent p.P81P 0.07 TCGA-A6-6780-01 17 4689225 4689225 G A VMO1 Intron 0.35 TCGA-A6-6780-01 17 47115648 47115648 C T IGF2BP1 Missense_Mutation p.R174W 0.08 deleterious(0) benign(0.246) TCGA-A6-6780-01 17 47794920 47794920 G A FAM117A Missense_Mutation p.H289Y 0.33 tolerated(1) benign(0.251) TCGA-A6-6780-01 17 4804388 4804388 C T CHRNE Silent p.S233S 0.34 TCGA-A6-6780-01 17 48667837 48667837 G T CACNA1G Missense_Mutation p.E769D 0.32 tolerated(0.49) benign(0.442) TCGA-A6-6780-01 17 48940586 48940586 A T TOB1 Missense_Mutation p.S265T 0.44 tolerated(0.08) probably_damaging(0.952) TCGA-A6-6780-01 17 5241435 5241435 T C RABEP1 Splice_Site p.X216_splice 0.07 TCGA-A6-6780-01 17 52978248 52978248 C A TOM1L1 Silent p.R8R 0.42 TCGA-A6-6780-01 17 56358055 56358055 C - MPO Frame_Shift_Del p.G22Vfs*6 0.26 TCGA-A6-6780-01 17 56598250 56598250 G A SEPT4 Intron 0.28 TCGA-A6-6780-01 17 6043 6043 G A DOC2B Silent p.D297D 0.47 TCGA-A6-6780-01 17 61910681 61910681 G A SMARCD2 Missense_Mutation p.R473C 0.25 tolerated(0.06) possibly_damaging(0.642) TCGA-A6-6780-01 17 62133286 62133287 - GCT ERN1 In_Frame_Ins p.Q473dup 0.29 TCGA-A6-6780-01 17 62818497 62818497 T C RNU7-115P 3'Flank 0.04 TCGA-A6-6780-01 17 63223633 63223633 T C RGS9 3'UTR 0.21 TCGA-A6-6780-01 17 64875099 64875099 G A CACNG5 Missense_Mutation p.R69Q 0.33 tolerated(0.08) benign(0.002) TCGA-A6-6780-01 17 65040954 65040954 C T CACNG1 Missense_Mutation p.R60C 0.43 deleterious(0.01) possibly_damaging(0.751) TCGA-A6-6780-01 17 65850818 65850818 A G BPTF Missense_Mutation p.E459G 0.36 possibly_damaging(0.832) TCGA-A6-6780-01 17 67081168 67081168 C T ABCA6 Splice_Site p.X1395_splice 0.33 TCGA-A6-6780-01 17 67178929 67178929 C T ABCA10 Missense_Mutation p.V840M 0.33 deleterious(0.02) benign(0.298) TCGA-A6-6780-01 17 67522794 67522794 G A MAP2K6 Silent p.S275S 0.29 TCGA-A6-6780-01 17 7094130 7094130 A G DLG4 Missense_Mutation p.I734T 0.29 deleterious(0) possibly_damaging(0.827) TCGA-A6-6780-01 17 7099862 7099862 A G DLG4 Silent p.H415H 0.32 TCGA-A6-6780-01 17 7130508 7130508 G A DVL2 Silent p.L482L 0.40 TCGA-A6-6780-01 17 72306209 72306209 C T DNAI2 Silent p.I467I 0.33 TCGA-A6-6780-01 17 72351377 72351377 C T KIF19 Missense_Mutation p.R975W 0.35 tolerated_low_confidence(0.05) possibly_damaging(0.794) TCGA-A6-6780-01 17 72436362 72436362 C T GPRC5C Silent p.H194H 0.23 TCGA-A6-6780-01 17 72480365 72480365 C T CD300A 3'UTR 0.43 TCGA-A6-6780-01 17 726899 726899 G A NXN Silent p.H195H 0.37 TCGA-A6-6780-01 17 7369827 7369827 G T ZBTB4 Silent p.S98S 0.37 TCGA-A6-6780-01 17 73751133 73751133 T C ITGB4 Intron 0.30 TCGA-A6-6780-01 17 74019420 74019421 - G EVPL Frame_Shift_Ins p.D145Rfs*100 0.30 TCGA-A6-6780-01 17 7557462 7557462 A - ATP1B2 Frame_Shift_Del p.K147Nfs*36 0.28 TCGA-A6-6780-01 17 76113598 76113598 A G TMC6 Missense_Mutation p.Y717H 0.05 tolerated(0.53) benign(0.002) TCGA-A6-6780-01 17 76120780 76120780 C - TMC6 Frame_Shift_Del p.G239Afs*77 0.20 TCGA-A6-6780-01 17 76122401 76122401 C T TMC6 Silent p.T76T 0.10 TCGA-A6-6780-01 17 76236039 76236039 G - TMEM235 3'UTR 0.25 TCGA-A6-6780-01 17 76482387 76482387 G - DNAH17 Frame_Shift_Del p.D2327Tfs*111 0.26 TCGA-A6-6780-01 17 76778318 76778318 G T CYTH1 5'UTR 0.36 TCGA-A6-6780-01 17 7748946 7748946 C T KDM6B Missense_Mutation p.A25V 0.32 unknown(0) TCGA-A6-6780-01 17 7749416 7749416 T C KDM6B Missense_Mutation p.L86P 0.34 unknown(0) TCGA-A6-6780-01 17 77709292 77709292 G T ENPP7 Missense_Mutation p.G284W 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 17 77924214 77924214 C T TBC1D16 Missense_Mutation p.R418Q 0.30 tolerated(0.07) benign(0.048) TCGA-A6-6780-01 17 7797122 7797122 G - CHD3 Splice_Site p.X324_splice 0.29 TCGA-A6-6780-01 17 78182215 78182215 A G CARD14 3'UTR 0.33 TCGA-A6-6780-01 17 78363037 78363037 G - RNF213 Frame_Shift_Del p.C5022Lfs*7 0.20 TCGA-A6-6780-01 17 78727920 78727920 C A RPTOR Silent p.I255I 0.28 TCGA-A6-6780-01 17 79203196 79203196 G T ENTHD2 Silent p.A370A 0.37 TCGA-A6-6780-01 17 79615060 79615060 C T TSPAN10 Silent p.D268D 0.37 TCGA-A6-6780-01 17 79860654 79860654 C - NPB 3'UTR 0.26 TCGA-A6-6780-01 17 79891081 79891081 C T PYCR1 3'UTR 0.47 TCGA-A6-6780-01 17 79910919 79910919 A G NOTUM Missense_Mutation p.M470T 0.39 deleterious(0) possibly_damaging(0.754) TCGA-A6-6780-01 17 80010158 80010158 G - GPS1 5'UTR 0.30 TCGA-A6-6780-01 17 80710076 80710076 C A TBCD Missense_Mutation p.L3M 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.665) TCGA-A6-6780-01 17 909373 909374 - G ABR Frame_Shift_Ins p.I843Hfs*46 0.23 TCGA-A6-6780-01 18 13068917 13068917 C T CEP192 Missense_Mutation p.T1630M 0.31 deleterious(0.01) probably_damaging(0.92) TCGA-A6-6780-01 18 13114191 13114191 A G CEP192 Missense_Mutation p.I2410M 0.18 tolerated(0.08) benign(0.107) TCGA-A6-6780-01 18 15323316 15323316 G C RNU6-721P 5'Flank 0.08 TCGA-A6-6780-01 18 21140212 21140212 A - NPC1 Frame_Shift_Del p.F288Lfs*22 0.34 TCGA-A6-6780-01 18 21140294 21140294 G A NPC1 Missense_Mutation p.T261M 0.45 tolerated(0.17) benign(0.004) TCGA-A6-6780-01 18 21413905 21413905 C T LAMA3 Silent p.S979S 0.33 TCGA-A6-6780-01 18 21736502 21736502 C T CABYR Intron 0.53 TCGA-A6-6780-01 18 21739921 21739921 A - CABYR Frame_Shift_Del p.S345Vfs*20 0.25 TCGA-A6-6780-01 18 22805426 22805426 T C ZNF521 Missense_Mutation p.H819R 0.05 deleterious(0) probably_damaging(0.983) TCGA-A6-6780-01 18 28670992 28670992 T C DSC2 Missense_Mutation p.Q158R 0.25 deleterious(0.02) benign(0.392) TCGA-A6-6780-01 18 28992945 28992945 A G DSG4 Missense_Mutation p.D856G 0.30 tolerated(1) benign(0.02) TCGA-A6-6780-01 18 29056212 29056212 C T DSG3 Missense_Mutation p.R997C 0.34 deleterious(0.01) possibly_damaging(0.65) TCGA-A6-6780-01 18 32682012 32682012 T C MAPRE2 Missense_Mutation p.Y167H 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-A6-6780-01 18 32720269 32720269 C T MAPRE2 Missense_Mutation p.T307I 0.29 tolerated(0.06) unknown(0) TCGA-A6-6780-01 18 32887623 32887623 A G ZNF271 RNA 0.40 TCGA-A6-6780-01 18 35145689 35145689 C A CELF4 5'UTR 0.46 TCGA-A6-6780-01 18 45374882 45374882 G A SMAD2 Nonsense_Mutation p.R321* 0.38 TCGA-A6-6780-01 18 5406832 5406832 G A EPB41L3 Nonsense_Mutation p.R765* 0.48 TCGA-A6-6780-01 18 54358512 54358513 - G WDR7 Frame_Shift_Ins p.D264Gfs*7 0.32 TCGA-A6-6780-01 18 56246941 56246941 A - ALPK2 Frame_Shift_Del p.L356Yfs*2 0.26 TCGA-A6-6780-01 18 60612496 60612496 G T PHLPP1 Nonsense_Mutation p.E1106* 0.25 TCGA-A6-6780-01 18 61078711 61078711 T C VPS4B Missense_Mutation p.H43R 0.41 tolerated(0.35) benign(0.295) TCGA-A6-6780-01 18 7032092 7032092 A C LAMA1 Silent p.A749A 0.44 TCGA-A6-6780-01 18 72998477 72998477 C T TSHZ1 Missense_Mutation p.A327V 0.36 deleterious(0.04) benign(0.002) TCGA-A6-6780-01 18 74631779 74631779 C T ZNF236 Missense_Mutation p.R1106W 0.38 deleterious(0) probably_damaging(0.993) TCGA-A6-6780-01 18 74659565 74659565 C T ZNF236 Missense_Mutation p.T1622M 0.37 tolerated(0.07) possibly_damaging(0.587) TCGA-A6-6780-01 18 74962787 74962787 G A GALR1 Missense_Mutation p.V95M 0.43 deleterious(0) possibly_damaging(0.63) TCGA-A6-6780-01 18 74963119 74963119 C T GALR1 Silent p.F205F 0.29 TCGA-A6-6780-01 18 9888060 9888061 - A TXNDC2 Frame_Shift_Ins p.E531Rfs*6 0.40 TCGA-A6-6780-01 19 1007877 1007877 G A GRIN3B Missense_Mutation p.A741T 0.36 deleterious(0) probably_damaging(0.971) TCGA-A6-6780-01 19 10468795 10468795 T C TYK2 Missense_Mutation p.H732R 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 19 10477140 10477140 G A TYK2 Silent p.L194L 0.39 TCGA-A6-6780-01 19 1080032 1080032 T C HMHA1 Missense_Mutation p.Y556H 0.30 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 19 11230865 11230865 C - LDLR Frame_Shift_Del p.P649Qfs*16 0.24 TCGA-A6-6780-01 19 11304405 11304405 G A KANK2 Silent p.R117R 0.06 TCGA-A6-6780-01 19 11343926 11343926 C A DOCK6 Missense_Mutation p.A891S 0.39 tolerated(0.67) benign(0.001) TCGA-A6-6780-01 19 11618821 11618821 G - ECSIT Frame_Shift_Del p.Q261Sfs*5 0.27 TCGA-A6-6780-01 19 12060489 12060489 C A ZNF700 Silent p.S550S 0.08 TCGA-A6-6780-01 19 1275767 1275769 CTT - C19orf24 In_Frame_Del p.F74del 0.56 TCGA-A6-6780-01 19 12858229 12858229 C T ASNA1 Silent p.C246C 0.41 TCGA-A6-6780-01 19 12866489 12866489 G A BEST2 Missense_Mutation p.D259N 0.21 tolerated(0.23) benign(0.267) TCGA-A6-6780-01 19 13210335 13210335 G A LYL1 Missense_Mutation p.A214V 0.31 tolerated(0.11) benign(0.063) TCGA-A6-6780-01 19 13265518 13265518 G T IER2 3'UTR 0.30 TCGA-A6-6780-01 19 13885464 13885464 A G C19orf53 Splice_Site p.X33_splice 0.32 TCGA-A6-6780-01 19 14067175 14067175 G A DCAF15 Missense_Mutation p.A209T 0.28 tolerated(0.12) benign(0.311) TCGA-A6-6780-01 19 14554303 14554303 C T PKN1 Missense_Mutation p.A121V 0.36 tolerated(0.27) benign(0) TCGA-A6-6780-01 19 1487153 1487153 C T PCSK4 Missense_Mutation p.R281H 0.37 tolerated(0.15) benign(0.064) TCGA-A6-6780-01 19 15376199 15376199 G A BRD4 Missense_Mutation p.P272L 0.27 unknown(0) TCGA-A6-6780-01 19 1556467 1556467 C T MEX3D Missense_Mutation p.D351N 0.40 deleterious(0.01) possibly_damaging(0.639) TCGA-A6-6780-01 19 15587089 15587089 C A PGLYRP2 Missense_Mutation p.G131V 0.38 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 19 15734862 15734862 T C CYP4F8 RNA 0.42 TCGA-A6-6780-01 19 1621912 1621914 AGA - TCF3 In_Frame_Del p.F293del 0.33 TCGA-A6-6780-01 19 16528906 16528906 G A EPS15L1 Silent p.A320A 0.48 TCGA-A6-6780-01 19 16612295 16612295 A - C19orf44 Frame_Shift_Del p.N233Tfs*26 0.19 TCGA-A6-6780-01 19 16664712 16664712 G A SLC35E1 Silent p.Y337Y 0.44 TCGA-A6-6780-01 19 16687173 16687173 G T MED26 Missense_Mutation p.L490M 0.06 deleterious(0) probably_damaging(0.981) TCGA-A6-6780-01 19 16860578 16860578 G A NWD1 Silent p.T375T 0.30 TCGA-A6-6780-01 19 16973347 16973347 G A SIN3B Missense_Mutation p.G415R 0.50 deleterious(0) probably_damaging(0.993) TCGA-A6-6780-01 19 17837562 17837562 C T MAP1S Missense_Mutation p.P457S 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6780-01 19 18004764 18004764 C A SLC5A5 3'UTR 0.38 TCGA-A6-6780-01 19 18280032 18280032 C T PIK3R2 Silent p.N705N 0.60 TCGA-A6-6780-01 19 18331213 18331213 C A PDE4C Missense_Mutation p.K236N 0.06 deleterious(0) possibly_damaging(0.548) TCGA-A6-6780-01 19 18375805 18375805 A G KIAA1683 Missense_Mutation p.W849R 0.36 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 19 18547602 18547602 C T ISYNA1 Silent p.P167P 0.45 TCGA-A6-6780-01 19 18649225 18649226 - G FKBP8 Frame_Shift_Ins p.H192Afs*18 0.21 TCGA-A6-6780-01 19 18794520 18794520 C T CRTC1 Missense_Mutation p.T3I 0.22 deleterious(0) possibly_damaging(0.678) TCGA-A6-6780-01 19 18900082 18900082 G - COMP Frame_Shift_Del p.R139Efs*107 0.41 TCGA-A6-6780-01 19 19465238 19465238 G A MAU2 Silent p.S541S 0.49 TCGA-A6-6780-01 19 19654602 19654602 C T CILP2 Silent p.P416P 0.42 TCGA-A6-6780-01 19 1990167 1990167 A G BTBD2 Missense_Mutation p.L275P 0.37 deleterious(0) probably_damaging(0.984) TCGA-A6-6780-01 19 20002989 20002989 C A ZNF253 Silent p.P311P 0.39 TCGA-A6-6780-01 19 20591793 20591793 T - ZNF826P Intron 0.31 TCGA-A6-6780-01 19 22575615 22575615 C A ZNF98 Missense_Mutation p.G141V 0.32 deleterious(0.04) possibly_damaging(0.785) TCGA-A6-6780-01 19 22847093 22847093 C T ZNF492 Missense_Mutation p.R208W 0.28 tolerated(0.55) benign(0.001) TCGA-A6-6780-01 19 23544742 23544742 C T ZNF91 Missense_Mutation p.E347K 0.45 tolerated(0.12) possibly_damaging(0.57) TCGA-A6-6780-01 19 2418039 2418039 T C TMPRSS9 Missense_Mutation p.I652T 0.18 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 19 2431861 2431862 - G LMNB2 Frame_Shift_Ins p.S544Lfs*23 0.42 TCGA-A6-6780-01 19 2438214 2438214 G A LMNB2 Missense_Mutation p.R211C 0.07 deleterious(0) probably_damaging(0.969) TCGA-A6-6780-01 19 2805117 2805117 C T THOP1 Silent p.C231C 0.08 TCGA-A6-6780-01 19 30106171 30106171 G A POP4 Missense_Mutation p.V183M 0.22 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 19 3110298 3110298 G A GNA11 Silent p.T96T 0.33 TCGA-A6-6780-01 19 3118934 3118934 G - GNA11 Frame_Shift_Del p.G208Afs*16 0.31 TCGA-A6-6780-01 19 34263612 34263612 C T CHST8 Missense_Mutation p.R307C 0.28 deleterious(0) possibly_damaging(0.849) TCGA-A6-6780-01 19 34904690 34904690 T C PDCD2L Silent p.S245S 0.32 TCGA-A6-6780-01 19 3551168 3551168 A G MFSD12 Missense_Mutation p.F108S 0.36 probably_damaging(0.997) TCGA-A6-6780-01 19 3600319 3600319 C T TBXA2R Missense_Mutation p.C105Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 19 36157720 36157720 G A UPK1A Silent p.A2A 0.46 TCGA-A6-6780-01 19 36214728 36214728 G - KMT2B Frame_Shift_Del p.R1055Gfs*127 0.28 TCGA-A6-6780-01 19 36279081 36279081 G A ARHGAP33 Missense_Mutation p.R1044H 0.30 tolerated_low_confidence(0.17) benign(0.184) TCGA-A6-6780-01 19 36395537 36395537 C A TYROBP Splice_Site p.X93_splice 0.29 TCGA-A6-6780-01 19 37369269 37369269 A T ZNF345 3'UTR 0.39 TCGA-A6-6780-01 19 3746625 3746625 G A TJP3 Missense_Mutation p.R727H 0.32 deleterious(0) probably_damaging(0.994) TCGA-A6-6780-01 19 3767339 3767339 G A MRPL54 Missense_Mutation p.R122Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.27 TCGA-A6-6780-01 19 38877740 38877740 G A GGN Silent p.S54S 0.31 TCGA-A6-6780-01 19 38993229 38993229 C T RYR1 Missense_Mutation p.A2566V 0.34 benign(0.07) TCGA-A6-6780-01 19 39008211 39008212 - C RYR1 Frame_Shift_Ins p.P3303Tfs*8 0.31 TCGA-A6-6780-01 19 39406348 39406348 G A SARS2 Silent p.L487L 0.33 TCGA-A6-6780-01 19 39998817 39998817 T C DLL3 3'UTR 0.29 TCGA-A6-6780-01 19 40480654 40480654 C - PSMC4 Frame_Shift_Del p.R200Efs*65 0.29 TCGA-A6-6780-01 19 40580707 40580707 G A ZNF780A Nonsense_Mutation p.R549* 0.36 TCGA-A6-6780-01 19 40748481 40748481 T C AKT2 Missense_Mutation p.E134G 0.28 tolerated(0.08) possibly_damaging(0.685) TCGA-A6-6780-01 19 41384665 41384665 C A CYP2A7 Missense_Mutation p.E277D 0.26 deleterious(0) benign(0.088) TCGA-A6-6780-01 19 42265959 42265959 C A CEACAM6 Silent p.A262A 0.04 TCGA-A6-6780-01 19 42525518 42525519 - C GRIK5 Frame_Shift_Ins p.F603Lfs*55 0.16 TCGA-A6-6780-01 19 42806336 42806337 - C PAFAH1B3 Intron 0.33 TCGA-A6-6780-01 19 44384201 44384201 C A ZNF404 Missense_Mutation p.D33Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 19 44492685 44492685 T C ZNF155 5'UTR 0.34 TCGA-A6-6780-01 19 45493697 45493697 G A CLPTM1 Missense_Mutation p.V393M 0.47 deleterious(0) probably_damaging(0.95) TCGA-A6-6780-01 19 45681401 45681406 CGGGGT - TRAPPC6A In_Frame_Del p.D24_P25del 0.29 TCGA-A6-6780-01 19 45926735 45926735 T C ERCC1 5'UTR 0.30 TCGA-A6-6780-01 19 47151620 47151620 G - DACT3 3'UTR 0.31 TCGA-A6-6780-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.26 TCGA-A6-6780-01 19 48260385 48260385 C - GLTSCR2 3'Flank 0.30 TCGA-A6-6780-01 19 48306173 48306173 C T TPRX1 Missense_Mutation p.R32H 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-A6-6780-01 19 48657173 48657173 C T LIG1 Missense_Mutation p.S141N 0.33 tolerated(0.63) benign(0.002) TCGA-A6-6780-01 19 48894661 48894662 - G KDELR1 5'UTR 0.50 TCGA-A6-6780-01 19 49113189 49113189 G T FAM83E Silent p.T234T 0.38 TCGA-A6-6780-01 19 49174129 49174129 C T NTN5 Missense_Mutation p.V39M 0.38 tolerated(0.26) benign(0.003) TCGA-A6-6780-01 19 49387059 49387059 G T TULP2 Silent p.L409L 0.32 TCGA-A6-6780-01 19 49519404 49519404 C T LHB Missense_Mutation p.S116N 0.29 tolerated(0.43) benign(0.27) TCGA-A6-6780-01 19 49557546 49557546 C A CGB7 3'UTR 0.07 TCGA-A6-6780-01 19 49633747 49633747 C T PPFIA3 Missense_Mutation p.A257V 0.45 tolerated(0.29) benign(0.075) TCGA-A6-6780-01 19 49894096 49894096 A G CCDC155 5'UTR 0.07 TCGA-A6-6780-01 19 49952834 49952834 C T PIH1D1 Missense_Mutation p.A79T 0.34 tolerated(0.18) benign(0.426) TCGA-A6-6780-01 19 50002926 50002927 AA - RPS11 3'UTR 0.30 TCGA-A6-6780-01 19 50156805 50156805 C T SCAF1 Silent p.A1053A 0.38 TCGA-A6-6780-01 19 50165405 50165405 A G IRF3 Missense_Mutation p.V261A 0.25 tolerated(0.05) probably_damaging(0.94) TCGA-A6-6780-01 19 50363409 50363409 G A PTOV1 Missense_Mutation p.R403Q 0.34 tolerated_low_confidence(0.23) possibly_damaging(0.602) TCGA-A6-6780-01 19 50363639 50363639 G - PTOV1 3'UTR 0.44 TCGA-A6-6780-01 19 50383624 50383627 TGCG CA TBC1D17 Frame_Shift_Del p.V95Afs*110 0.42 TCGA-A6-6780-01 19 50393255 50393255 G T IL4I1 Missense_Mutation p.P481Q 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 19 50906393 50906393 C T POLD1 Missense_Mutation p.R352C 0.33 deleterious(0.02) probably_damaging(0.988) TCGA-A6-6780-01 19 51020838 51020838 G A LRRC4B Missense_Mutation p.T711M 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-6780-01 19 51022585 51022585 C T LRRC4B Missense_Mutation p.A129T 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-A6-6780-01 19 51165669 51165669 A G SHANK1 Silent p.P2013P 0.29 TCGA-A6-6780-01 19 5135472 5135472 C T KDM4B Silent p.G736G 0.40 TCGA-A6-6780-01 19 51462193 51462193 G - KLK6 3'UTR 0.40 TCGA-A6-6780-01 19 51503478 51503478 C A KLK8 Missense_Mutation p.Q134H 0.33 tolerated(0.12) benign(0.002) TCGA-A6-6780-01 19 51837124 51837124 C T VSIG10L Missense_Mutation p.S832N 0.30 tolerated(0.1) benign(0.011) TCGA-A6-6780-01 19 52538321 52538321 T - ZNF432 Frame_Shift_Del p.N204Tfs*45 0.23 TCGA-A6-6780-01 19 52619596 52619596 C G ZNF616 Missense_Mutation p.C274S 0.29 deleterious(0.01) probably_damaging(1) TCGA-A6-6780-01 19 52888546 52888546 T C ZNF880 Silent p.T571T 0.25 TCGA-A6-6780-01 19 52955027 52955027 G T ZNF578 5'Flank 0.23 TCGA-A6-6780-01 19 53209645 53209645 T - ZNF611 Frame_Shift_Del p.K221Nfs*6 0.25 TCGA-A6-6780-01 19 53453582 53453582 T C ZNF816 Silent p.T482T 0.45 TCGA-A6-6780-01 19 53794577 53794577 G A BIRC8 5'UTR 0.07 TCGA-A6-6780-01 19 54080453 54080453 A C ZNF331 Missense_Mutation p.K213N 0.22 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 19 54379556 54379556 T A MYADM 3'UTR 0.45 TCGA-A6-6780-01 19 54410215 54410215 C - PRKCG 3'UTR 0.28 TCGA-A6-6780-01 19 54671966 54671966 C T TMC4 Missense_Mutation p.R249H 0.32 tolerated(0.38) benign(0.001) TCGA-A6-6780-01 19 54676859 54676859 C T TMC4 5'UTR 0.38 TCGA-A6-6780-01 19 55450689 55450689 C T NLRP7 Missense_Mutation p.V500I 0.28 tolerated(0.2) benign(0.022) TCGA-A6-6780-01 19 55512184 55512184 A - NLRP2 Frame_Shift_Del p.N1038Tfs*4 0.24 TCGA-A6-6780-01 19 55758302 55758302 A G PPP6R1 Missense_Mutation p.M57T 0.45 deleterious(0) possibly_damaging(0.632) TCGA-A6-6780-01 19 55997124 55997124 C - NAT14 Frame_Shift_Del p.L18Wfs*6 0.23 TCGA-A6-6780-01 19 56028766 56028766 C A SSC5D Silent p.T1041T 0.28 TCGA-A6-6780-01 19 57065827 57065827 A - ZFP28 Frame_Shift_Del p.K559Nfs*50 0.26 TCGA-A6-6780-01 19 57646264 57646264 T - ZIM3 3'UTR 0.27 TCGA-A6-6780-01 19 57722723 57722723 C T ZNF264 Silent p.G86G 0.43 TCGA-A6-6780-01 19 57752202 57752202 C T ZNF805 5'Flank 0.43 TCGA-A6-6780-01 19 57802613 57802613 G A ZNF460 Missense_Mutation p.R235H 0.42 deleterious(0.05) benign(0.407) TCGA-A6-6780-01 19 5785200 5785200 G A DUS3L 3'UTR 0.25 TCGA-A6-6780-01 19 58011393 58011393 C T ZNF773 5'UTR 0.36 TCGA-A6-6780-01 19 58452370 58452370 A C ZNF256 Silent p.P602P 0.29 TCGA-A6-6780-01 19 59027840 59027840 G A ZBTB45 Missense_Mutation p.P401S 0.54 tolerated(0.17) benign(0.014) TCGA-A6-6780-01 19 59073506 59073506 T C MZF1 Missense_Mutation p.D713G 0.31 deleterious(0.04) possibly_damaging(0.653) TCGA-A6-6780-01 19 6466890 6466890 C - CRB3 Intron 0.08 TCGA-A6-6780-01 19 6751459 6751459 G A TRIP10 3'UTR 0.35 TCGA-A6-6780-01 19 7166302 7166302 T C INSR Missense_Mutation p.H575R 0.30 tolerated(0.09) benign(0.003) TCGA-A6-6780-01 19 756996 756996 G A MISP Missense_Mutation p.R17H 0.37 deleterious(0.04) benign(0.098) TCGA-A6-6780-01 19 7684857 7684857 C T XAB2 Missense_Mutation p.A791T 0.22 tolerated(0.19) benign(0.002) TCGA-A6-6780-01 19 7805206 7805206 G - CD209 3'UTR 0.33 TCGA-A6-6780-01 19 7805722 7805722 C T CD209 3'UTR 0.36 TCGA-A6-6780-01 19 813423 813423 G C LPPR3 Missense_Mutation p.P463R 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-A6-6780-01 19 8152733 8152733 G A FBN3 Missense_Mutation p.R2199W 0.08 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 19 8171075 8171075 C - FBN3 Frame_Shift_Del p.G1577Vfs*72 0.22 TCGA-A6-6780-01 19 889778 889778 C T MED16 Missense_Mutation p.G103R 0.27 deleterious(0.02) probably_damaging(0.989) TCGA-A6-6780-01 19 9083008 9083008 T G MUC16 Missense_Mutation p.N2936T 0.08 unknown(0) TCGA-A6-6780-01 19 9089940 9089940 G A MUC16 Silent p.H625H 0.34 TCGA-A6-6780-01 19 9213941 9213941 G A OR7G2 Silent p.S14S 0.29 TCGA-A6-6780-01 1 100584580 100584580 G T SASS6 Silent p.A221A 0.36 TCGA-A6-6780-01 1 101339425 101339425 A - EXTL2 3'UTR 0.21 TCGA-A6-6780-01 1 10177649 10177683 AGCACCAAAGGTAATATGAAATGGATTAACTTAAA GCACCAAAGGTAATATGAAATGGATTAACTT UBE4B Splice_Site p.X443_splice 0.12 TCGA-A6-6780-01 1 103488406 103488406 G A COL11A1 Silent p.G379G 0.36 TCGA-A6-6780-01 1 107599376 107599376 C G PRMT6 Silent p.G13G 0.25 TCGA-A6-6780-01 1 110233076 110233076 A G GSTM1 Missense_Mutation p.I153V 0.06 tolerated(0.11) benign(0.016) TCGA-A6-6780-01 1 110741092 110741093 - C SLC6A17 3'UTR 0.33 TCGA-A6-6780-01 1 11082643 11082643 T C TARDBP Missense_Mutation p.S393P 0.31 tolerated(0.12) benign(0.272) TCGA-A6-6780-01 1 114437968 114437968 G A AP4B1 Missense_Mutation p.P647S 0.41 tolerated(0.08) benign(0.05) TCGA-A6-6780-01 1 116380558 116380558 C T NHLH2 3'UTR 0.34 TCGA-A6-6780-01 1 117131468 117131468 C - IGSF3 Frame_Shift_Del p.G783Afs*27 0.32 TCGA-A6-6780-01 1 117699196 117699196 C A VTCN1 Missense_Mutation p.A149S 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-A6-6780-01 1 120165484 120165484 C T ZNF697 Silent p.T494T 0.34 TCGA-A6-6780-01 1 12198302 12198302 C T TNFRSF8 Missense_Mutation p.A451V 0.37 tolerated(1) benign(0.001) TCGA-A6-6780-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.25 TCGA-A6-6780-01 1 13940193 13940193 G A PDPN Missense_Mutation p.G191R 0.31 tolerated(0.09) possibly_damaging(0.891) TCGA-A6-6780-01 1 145532480 145532480 G A ITGA10 Silent p.R311R 0.51 TCGA-A6-6780-01 1 145696572 145696572 A G CD160 3'UTR 0.38 TCGA-A6-6780-01 1 147230674 147230674 C A GJA5 Nonsense_Mutation p.E225* 0.43 TCGA-A6-6780-01 1 150479450 150479450 T C TARS2 Silent p.R689R 0.35 TCGA-A6-6780-01 1 150527059 150527059 C T ADAMTSL4 Intron 0.50 TCGA-A6-6780-01 1 151234711 151234711 A G PSMD4 Missense_Mutation p.N34S 0.35 tolerated(0.22) possibly_damaging(0.531) TCGA-A6-6780-01 1 151380717 151380717 C A POGZ Splice_Site p.X745_splice 0.27 TCGA-A6-6780-01 1 152286884 152286885 - T FLG Frame_Shift_Ins p.E160Rfs*10 0.31 TCGA-A6-6780-01 1 152326089 152326089 A G FLG2 Silent p.T1391T 0.46 TCGA-A6-6780-01 1 153233779 153233779 C T LOR Silent p.G118G 0.23 TCGA-A6-6780-01 1 153748458 153748458 C - SLC27A3 Frame_Shift_Del p.P210Lfs*73 0.30 TCGA-A6-6780-01 1 153751008 153751008 C T SLC27A3 Missense_Mutation p.H523Y 0.30 tolerated(1) possibly_damaging(0.636) TCGA-A6-6780-01 1 155258094 155258094 G A HCN3 Missense_Mutation p.R722Q 0.37 tolerated_low_confidence(0.41) benign(0.046) TCGA-A6-6780-01 1 155629470 155629470 T G YY1AP1 Missense_Mutation p.E882A 0.29 deleterious_low_confidence(0.04) benign(0.192) TCGA-A6-6780-01 1 155823172 155823172 T - GON4L Frame_Shift_Del p.M134* 0.24 TCGA-A6-6780-01 1 156046632 156046632 G A MEX3A Silent p.S432S 0.56 TCGA-A6-6780-01 1 156231165 156231165 A G SMG5 Missense_Mutation p.L689S 0.38 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 1 156248813 156248813 C A SMG5 Missense_Mutation p.E29D 0.32 tolerated(0.5) benign(0.024) TCGA-A6-6780-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.31 TCGA-A6-6780-01 1 156694023 156694023 G A ISG20L2 Missense_Mutation p.L289F 0.36 deleterious(0) probably_damaging(0.958) TCGA-A6-6780-01 1 157105373 157105373 C A ETV3 Missense_Mutation p.Q58H 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A6-6780-01 1 157648594 157648594 G A FCRL3 Missense_Mutation p.A704V 0.29 tolerated(0.22) benign(0.319) TCGA-A6-6780-01 1 157767580 157767580 C T FCRL1 Intron 0.26 TCGA-A6-6780-01 1 158450239 158450239 C T OR10R2 Missense_Mutation p.A191V 0.32 tolerated(0.07) possibly_damaging(0.491) TCGA-A6-6780-01 1 158576757 158576757 T - OR10Z1 Frame_Shift_Del p.C179Vfs*7 0.23 TCGA-A6-6780-01 1 159283757 159283757 T C OR10J3 Silent p.S231S 0.45 TCGA-A6-6780-01 1 160063703 160063703 T C IGSF8 Missense_Mutation p.Y234C 0.36 deleterious(0) possibly_damaging(0.855) TCGA-A6-6780-01 1 161091995 161091997 TCC - DEDD In_Frame_Del p.E299del 0.30 TCGA-A6-6780-01 1 161094197 161094197 T C DEDD Missense_Mutation p.Q19R 0.36 tolerated(0.69) benign(0) TCGA-A6-6780-01 1 161127045 161127045 T C UFC1 Missense_Mutation p.W65R 0.30 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 1 161161236 161161236 A G ADAMTS4 Missense_Mutation p.Y736H 0.16 deleterious(0) benign(0.036) TCGA-A6-6780-01 1 161172192 161172193 - T NDUFS2 Frame_Shift_Ins p.L7Ffs*62 0.28 TCGA-A6-6780-01 1 161953717 161953717 C - OLFML2B Frame_Shift_Del p.L668Sfs*57 0.24 TCGA-A6-6780-01 1 16268826 16268828 CTT - ZBTB17 In_Frame_Del p.E709del 0.27 TCGA-A6-6780-01 1 162769725 162769725 C A HSD17B7 Missense_Mutation p.Q214K 0.04 tolerated(0.25) benign(0.005) TCGA-A6-6780-01 1 16531389 16531389 C T ARHGEF19 Missense_Mutation p.R591H 0.37 deleterious(0) benign(0.363) TCGA-A6-6780-01 1 16532520 16532520 C T ARHGEF19 Missense_Mutation p.D453N 0.30 deleterious(0.02) probably_damaging(1) TCGA-A6-6780-01 1 169701085 169701085 T C SELE Splice_Site p.X141_splice 0.36 TCGA-A6-6780-01 1 17313106 17313106 G A ATP13A2 Missense_Mutation p.A1086V 0.44 tolerated(0.9) benign(0.001) TCGA-A6-6780-01 1 17330828 17330828 T C ATP13A2 Missense_Mutation p.S186G 0.39 tolerated(0.17) benign(0.048) TCGA-A6-6780-01 1 173579212 173579212 G A ANKRD45 3'UTR 0.40 TCGA-A6-6780-01 1 17570738 17570738 A T PADI1 Nonstop_Mutation p.*664Cext*13 0.37 TCGA-A6-6780-01 1 17607262 17607262 A - PADI3 Frame_Shift_Del p.A580Qfs*9 0.25 TCGA-A6-6780-01 1 178834509 178834509 T C ANGPTL1 Missense_Mutation p.M135V 0.42 tolerated(0.07) benign(0.311) TCGA-A6-6780-01 1 179095699 179095699 C T ABL2 Missense_Mutation p.S167N 0.34 deleterious(0) probably_damaging(0.983) TCGA-A6-6780-01 1 179100582 179100582 T C ABL2 Silent p.E85E 0.23 TCGA-A6-6780-01 1 17928679 17928679 G A ARHGEF10L Silent p.R105R 0.35 TCGA-A6-6780-01 1 179398734 179398734 A G AXDND1 Missense_Mutation p.I438V 0.35 tolerated(0.1) benign(0.141) TCGA-A6-6780-01 1 179815593 179815593 C T TOR1AIP2 Silent p.T342T 0.45 TCGA-A6-6780-01 1 179858506 179858506 T C TOR1AIP1 Splice_Site p.X204_splice 0.34 TCGA-A6-6780-01 1 180044215 180044215 C T CEP350 Silent p.L1876L 0.34 TCGA-A6-6780-01 1 181452992 181452992 G A CACNA1E Missense_Mutation p.A38T 0.32 tolerated(0.34) possibly_damaging(0.499) TCGA-A6-6780-01 1 181680149 181680149 G A CACNA1E Missense_Mutation p.R372H 0.34 deleterious(0) possibly_damaging(0.522) TCGA-A6-6780-01 1 182353702 182353702 G A GLUL Silent p.S320S 0.29 TCGA-A6-6780-01 1 184006484 184006484 G A COLGALT2 Missense_Mutation p.A3V 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.499) TCGA-A6-6780-01 1 19446684 19446684 G A UBR4 Missense_Mutation p.H3434Y 0.38 benign(0.1) TCGA-A6-6780-01 1 196659345 196659345 C A CFH Missense_Mutation p.P438T 0.34 deleterious(0.01) benign(0.443) TCGA-A6-6780-01 1 197112192 197112192 A - ASPM Frame_Shift_Del p.L397* 0.21 TCGA-A6-6780-01 1 200578035 200578035 T C KIF14 Missense_Mutation p.S493G 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 1 200943968 200943968 G C KIF21B Missense_Mutation p.A1563G 0.24 tolerated(1) benign(0.013) TCGA-A6-6780-01 1 201174463 201174463 C T IGFN1 Silent p.S390S 0.44 TCGA-A6-6780-01 1 201328248 201328248 G - TNNT2 3'UTR 0.37 TCGA-A6-6780-01 1 203144870 203144870 T - MYBPH Frame_Shift_Del p.N5Tfs*73 0.28 TCGA-A6-6780-01 1 204411722 204411722 A C PIK3C2B Missense_Mutation p.F1030V 0.37 deleterious(0.03) benign(0.437) TCGA-A6-6780-01 1 204966330 204966330 G A NFASC Missense_Mutation p.A939T 0.50 tolerated(0.4) unknown(0) TCGA-A6-6780-01 1 205589099 205589099 A - ELK4 Frame_Shift_Del p.S359Hfs*7 0.28 TCGA-A6-6780-01 1 205767938 205767938 T G SLC41A1 Missense_Mutation p.I235L 0.20 tolerated(0.12) benign(0.015) TCGA-A6-6780-01 1 206681264 206681264 C T RASSF5 Missense_Mutation p.P110L 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-A6-6780-01 1 207871016 207871016 G C CR1L Missense_Mutation p.R344T 0.35 tolerated(0.4) benign(0.012) TCGA-A6-6780-01 1 20879749 20879749 G A FAM43B Missense_Mutation p.V95M 0.41 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 1 209956747 209956747 A G C1orf74 Missense_Mutation p.F78S 0.32 deleterious(0.01) possibly_damaging(0.572) TCGA-A6-6780-01 1 211486823 211486823 A C RCOR3 Missense_Mutation p.T459P 0.09 tolerated(0.45) benign(0.002) TCGA-A6-6780-01 1 2116003 2116005 CTC - C1orf86 3'Flank 0.26 TCGA-A6-6780-01 1 213415459 213415459 G T RPS6KC1 Missense_Mutation p.K880N 0.40 tolerated(0.05) benign(0.232) TCGA-A6-6780-01 1 214549758 214549758 A G PTPN14 Missense_Mutation p.L904P 0.35 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 1 215848446 215848446 A T USH2A Silent p.P4269P 0.21 TCGA-A6-6780-01 1 220192338 220192338 T C EPRS Missense_Mutation p.Q478R 0.21 deleterious(0) probably_damaging(0.984) TCGA-A6-6780-01 1 220330642 220330642 G A RAB3GAP2 Silent p.T1175T 0.32 TCGA-A6-6780-01 1 220341014 220341014 C T RAB3GAP2 Missense_Mutation p.G937D 0.31 deleterious(0.03) probably_damaging(0.986) TCGA-A6-6780-01 1 222846668 222846668 T C AIDA Silent p.E231E 0.34 TCGA-A6-6780-01 1 22456346 22456346 T C WNT4 Splice_Site p.X26_splice 0.31 TCGA-A6-6780-01 1 224588749 224588750 - T WDR26 Frame_Shift_Ins p.M441Nfs*6 0.32 TCGA-A6-6780-01 1 225594520 225594520 C T LBR Silent p.T443T 0.31 TCGA-A6-6780-01 1 227083196 227083196 G A PSEN2 Silent p.T421T 0.38 TCGA-A6-6780-01 1 227842879 227842879 C T ZNF678 Missense_Mutation p.R310C 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-A6-6780-01 1 227920227 227920227 G A JMJD4 Missense_Mutation p.R420C 0.33 deleterious(0) benign(0.188) TCGA-A6-6780-01 1 228461184 228461184 G A OBSCN Silent p.A2066A 0.35 TCGA-A6-6780-01 1 228494865 228494865 C T OBSCN Missense_Mutation p.R5021C 0.32 benign(0.03) TCGA-A6-6780-01 1 229623332 229623332 G A NUP133 Missense_Mutation p.T408M 0.25 tolerated(0.36) benign(0.001) TCGA-A6-6780-01 1 229730598 229730598 G A TAF5L Missense_Mutation p.R406C 0.30 deleterious(0.01) benign(0.136) TCGA-A6-6780-01 1 23417750 23417750 A G LUZP1 Missense_Mutation p.V1002A 0.43 deleterious(0.01) benign(0.204) TCGA-A6-6780-01 1 235506598 235506598 C T GGPS1 3'UTR 0.25 TCGA-A6-6780-01 1 236926031 236926031 A G ACTN2 3'UTR 0.31 TCGA-A6-6780-01 1 23697194 23697194 T C C1orf213 3'UTR 0.05 TCGA-A6-6780-01 1 237870462 237870462 G T RYR2 Missense_Mutation p.C3265F 0.36 benign(0.014) TCGA-A6-6780-01 1 24080931 24080931 G A TCEB3 Missense_Mutation p.R617H 0.46 tolerated(0.07) probably_damaging(0.997) TCGA-A6-6780-01 1 24106358 24106358 A G PITHD1 Missense_Mutation p.T83A 0.39 deleterious(0.02) probably_damaging(0.976) TCGA-A6-6780-01 1 2434156 2434156 G A PLCH2 Nonsense_Mutation p.W1062* 0.32 TCGA-A6-6780-01 1 244218336 244218336 G A ZBTB18 Silent p.T420T 0.32 TCGA-A6-6780-01 1 247614485 247614485 G - OR2B11 Frame_Shift_Del p.P267Lfs*18 0.27 TCGA-A6-6780-01 1 248020704 248020704 C T TRIM58 Silent p.G52G 0.25 TCGA-A6-6780-01 1 249142065 249142065 G A ZNF672 Missense_Mutation p.A198T 0.21 tolerated(0.76) benign(0.002) TCGA-A6-6780-01 1 249211017 249211017 A G PGBD2 Silent p.S78S 0.38 TCGA-A6-6780-01 1 25688893 25688893 A C RHCE 3'UTR 0.06 TCGA-A6-6780-01 1 25825033 25825033 A - TMEM57 3'UTR 0.32 TCGA-A6-6780-01 1 26527357 26527357 C T CATSPER4 Missense_Mutation p.P342S 0.36 tolerated(0.14) possibly_damaging(0.589) TCGA-A6-6780-01 1 26885393 26885393 C T RPS6KA1 Missense_Mutation p.R403C 0.36 tolerated(0.06) benign(0.241) TCGA-A6-6780-01 1 27101139 27101139 A - ARID1A Frame_Shift_Del p.N1475Tfs*6 0.27 TCGA-A6-6780-01 1 27218952 27218952 A G GPATCH3 Silent p.P437P 0.31 TCGA-A6-6780-01 1 27220851 27220851 G A GPATCH3 Silent p.D309D 0.37 TCGA-A6-6780-01 1 27250628 27250628 A G NUDC Missense_Mutation p.I44V 0.32 tolerated(0.29) benign(0.004) TCGA-A6-6780-01 1 27687743 27687743 G A MAP3K6 Silent p.S579S 0.39 TCGA-A6-6780-01 1 27690879 27690879 C T MAP3K6 Missense_Mutation p.V171I 0.23 tolerated(0.15) benign(0.005) TCGA-A6-6780-01 1 29447744 29447744 G A TMEM200B Silent p.P199P 0.35 TCGA-A6-6780-01 1 31196320 31196320 C T MATN1 Missense_Mutation p.A27T 0.33 tolerated(0.21) benign(0.02) TCGA-A6-6780-01 1 32560545 32560545 C T TMEM39B Missense_Mutation p.A363V 0.40 deleterious(0.02) possibly_damaging(0.59) TCGA-A6-6780-01 1 32658279 32658279 T C TXLNA Missense_Mutation p.S369P 0.26 tolerated(0.13) probably_damaging(0.953) TCGA-A6-6780-01 1 32670585 32670585 A G CCDC28B Intron 0.40 TCGA-A6-6780-01 1 32713189 32713189 G A FAM167B Missense_Mutation p.R56H 0.39 tolerated(0.25) benign(0) TCGA-A6-6780-01 1 32798326 32798328 AGG - HDAC1 In_Frame_Del p.E468del 0.39 TCGA-A6-6780-01 1 33772592 33772592 G A A3GALT2 Silent p.R266R 0.25 TCGA-A6-6780-01 1 33957209 33957209 G A ZSCAN20 Missense_Mutation p.A451T 0.32 tolerated(0.26) benign(0.004) TCGA-A6-6780-01 1 34123628 34123628 G A CSMD2 Silent p.Y1415Y 0.33 TCGA-A6-6780-01 1 35260157 35260157 G A GJA4 Missense_Mutation p.A115T 0.40 tolerated(0.4) possibly_damaging(0.448) TCGA-A6-6780-01 1 35452574 35452574 A - ZMYM6 3'Flank 0.53 TCGA-A6-6780-01 1 35580829 35580829 A G ZMYM1 Missense_Mutation p.E1133G 0.33 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 1 3563999 3563999 G A WRAP73 Silent p.C65C 0.32 TCGA-A6-6780-01 1 36230060 36230060 G T CLSPN Missense_Mutation p.P130H 0.33 deleterious(0) benign(0.443) TCGA-A6-6780-01 1 36786816 36786817 CT - SH3D21 3'UTR 0.32 TCGA-A6-6780-01 1 3683980 3683980 C T CCDC27 Missense_Mutation p.R572C 0.32 deleterious(0) possibly_damaging(0.544) TCGA-A6-6780-01 1 3688025 3688025 C - CCDC27 Frame_Shift_Del p.L639Cfs*8 0.28 TCGA-A6-6780-01 1 3697555 3697555 A - LRRC47 3'UTR 0.25 TCGA-A6-6780-01 1 37337877 37337877 C T GRIK3 Missense_Mutation p.R215H 0.27 deleterious(0) probably_damaging(0.911) TCGA-A6-6780-01 1 38272810 38272810 G A YRDC Missense_Mutation p.S156L 0.08 tolerated(0.1) benign(0.015) TCGA-A6-6780-01 1 39763302 39763302 A G MACF1 Missense_Mutation p.D794G 0.33 possibly_damaging(0.828) TCGA-A6-6780-01 1 39796872 39796872 T A MACF1 Intron 0.50 TCGA-A6-6780-01 1 39852964 39852965 - A MACF1 Frame_Shift_Ins p.N2757Kfs*19 0.25 TCGA-A6-6780-01 1 40236567 40236567 G T OXCT2 Missense_Mutation p.L121M 0.20 tolerated(0.23) possibly_damaging(0.863) TCGA-A6-6780-01 1 43200572 43200572 A G CLDN19 3'UTR 0.45 TCGA-A6-6780-01 1 43647521 43647521 G T WDR65 Missense_Mutation p.Q158H 0.05 deleterious(0.03) possibly_damaging(0.749) TCGA-A6-6780-01 1 43675603 43675604 - C WDR65 Frame_Shift_Ins p.G651Rfs*65 0.28 TCGA-A6-6780-01 1 43738819 43738819 G A TMEM125 Silent p.R142R 0.44 TCGA-A6-6780-01 1 45166757 45166757 A G C1orf228 Missense_Mutation p.Q202R 0.31 deleterious(0.04) possibly_damaging(0.551) TCGA-A6-6780-01 1 45477931 45477931 G A UROD 5'UTR 0.28 TCGA-A6-6780-01 1 46096158 46096158 G C GPBP1L1 Missense_Mutation p.H389D 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6780-01 1 47080780 47080780 C T MOB3C 5'UTR 0.24 TCGA-A6-6780-01 1 47138637 47138637 C T TEX38 Missense_Mutation p.R44W 0.37 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 1 47279265 47279265 G T CYP4B1 Missense_Mutation p.G203C 0.47 tolerated(1) probably_damaging(0.957) TCGA-A6-6780-01 1 47564775 47564775 A T CYP4Z1 Missense_Mutation p.T296S 0.29 deleterious(0.02) benign(0) TCGA-A6-6780-01 1 48696326 48696326 T C SLC5A9 Missense_Mutation p.Y212H 0.27 deleterious(0) probably_damaging(0.981) TCGA-A6-6780-01 1 51984982 51984982 C T EPS15 5'UTR 0.50 TCGA-A6-6780-01 1 52826175 52826175 T C CC2D1B Missense_Mutation p.H175R 0.37 tolerated(0.51) benign(0) TCGA-A6-6780-01 1 52854133 52854133 G A ORC1 Missense_Mutation p.T455M 0.28 deleterious(0.02) possibly_damaging(0.513) TCGA-A6-6780-01 1 55081757 55081757 G - FAM151A Frame_Shift_Del p.T118Lfs*43 0.30 TCGA-A6-6780-01 1 57157094 57157094 T - PRKAA2 Frame_Shift_Del p.F90Lfs*3 0.27 TCGA-A6-6780-01 1 57252865 57252865 G T C1orf168 Silent p.G312G 0.25 TCGA-A6-6780-01 1 61872310 61872310 C T NFIA Missense_Mutation p.P489L 0.38 deleterious(0.01) probably_damaging(0.935) TCGA-A6-6780-01 1 61921198 61921198 T A NFIA 3'UTR 0.20 TCGA-A6-6780-01 1 65296647 65296647 A T RAVER2 Missense_Mutation p.L672F 0.30 tolerated(0.17) benign(0.125) TCGA-A6-6780-01 1 6681624 6681624 G A PHF13 Missense_Mutation p.C277Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 1 68895302 68895302 C T RPE65 3'UTR 0.45 TCGA-A6-6780-01 1 70505050 70505050 C T LRRC7 Silent p.Y1143Y 0.42 TCGA-A6-6780-01 1 74575119 74575119 G A LRRIQ3 Missense_Mutation p.P276S 0.30 tolerated(0.24) benign(0.02) TCGA-A6-6780-01 1 78430808 78430808 G A FUBP1 Missense_Mutation p.A194V 0.11 deleterious(0.02) benign(0.402) TCGA-A6-6780-01 1 85510906 85510907 - A MCOLN3 Frame_Shift_Ins p.M47Hfs*5 0.34 TCGA-A6-6780-01 1 86622197 86622197 C A COL24A1 5'UTR 0.30 TCGA-A6-6780-01 1 89528791 89528791 T C GBP1 Missense_Mutation p.I43V 0.33 deleterious(0.02) benign(0.145) TCGA-A6-6780-01 1 89735376 89735377 - A GBP5 Intron 0.43 TCGA-A6-6780-01 1 94485221 94485221 G A ABCA4 Missense_Mutation p.R1705W 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 20 168602 168602 A G DEFB128 Silent p.H69H 0.32 TCGA-A6-6780-01 20 18296731 18296731 C T ZNF133 Silent p.C411C 0.33 TCGA-A6-6780-01 20 18477722 18477722 C T RBBP9 Silent p.E30E 0.19 TCGA-A6-6780-01 20 20552140 20552140 A - RALGAPA2 Frame_Shift_Del p.Y1040Tfs*3 0.27 TCGA-A6-6780-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.29 TCGA-A6-6780-01 20 2442354 2442354 A G SNRPB 3'UTR 0.35 TCGA-A6-6780-01 20 2474199 2474199 C A ZNF343 Missense_Mutation p.C48F 0.05 deleterious(0.03) benign(0) TCGA-A6-6780-01 20 25198180 25198180 C T ENTPD6 Missense_Mutation p.R281W 0.42 deleterious(0) possibly_damaging(0.773) TCGA-A6-6780-01 20 25755480 25755480 T C FAM182B 3'UTR 0.16 TCGA-A6-6780-01 20 2593984 2593984 A G TMC2 Intron 0.31 TCGA-A6-6780-01 20 2636733 2636733 C T NOP56 Intron 0.15 TCGA-A6-6780-01 20 2844843 2844843 C T VPS16 Missense_Mutation p.R544C 0.33 deleterious(0) probably_damaging(0.977) TCGA-A6-6780-01 20 3063711 3063713 CTC - AVP In_Frame_Del p.E78del 0.38 TCGA-A6-6780-01 20 30686863 30686863 A G HCK Missense_Mutation p.T435A 0.27 deleterious(0) probably_damaging(0.995) TCGA-A6-6780-01 20 30803168 30803168 A G POFUT1 Missense_Mutation p.T115A 0.28 tolerated(0.73) benign(0.024) TCGA-A6-6780-01 20 31021501 31021501 C T ASXL1 Silent p.A500A 0.25 TCGA-A6-6780-01 20 3128920 3128921 - A FASTKD5 Frame_Shift_Ins p.S266Ffs*2 0.25 TCGA-A6-6780-01 20 3145236 3145236 C T LZTS3 Missense_Mutation p.R629H 0.36 deleterious(0) probably_damaging(0.975) TCGA-A6-6780-01 20 33050007 33050007 C A ITCH Missense_Mutation p.R510S 0.32 deleterious(0) probably_damaging(0.99) TCGA-A6-6780-01 20 3564726 3564726 C - ATRN Frame_Shift_Del p.P984Lfs*34 0.18 TCGA-A6-6780-01 20 35696574 35696574 A - RBL1 Frame_Shift_Del p.F102Lfs*4 0.21 TCGA-A6-6780-01 20 36407730 36407730 A G CTNNBL1 Missense_Mutation p.M342V 0.31 deleterious(0) possibly_damaging(0.542) TCGA-A6-6780-01 20 36641628 36641628 A G TTI1 Silent p.L197L 0.33 TCGA-A6-6780-01 20 37154597 37154597 T C RALGAPB Silent p.T654T 0.34 TCGA-A6-6780-01 20 37464515 37464515 G C PPP1R16B 5'UTR 0.60 TCGA-A6-6780-01 20 42194985 42194985 A C SGK2 Missense_Mutation p.K10N 0.35 deleterious_low_confidence(0.01) benign(0.403) TCGA-A6-6780-01 20 43128781 43128781 G T SERINC3 3'UTR 0.27 TCGA-A6-6780-01 20 43804602 43804602 A C PI3 Missense_Mutation p.K60N 0.33 deleterious(0.01) possibly_damaging(0.856) TCGA-A6-6780-01 20 44045330 44045330 A G PIGT Missense_Mutation p.T121A 0.35 tolerated(0.36) benign(0.174) TCGA-A6-6780-01 20 44983880 44983880 G A SLC35C2 Missense_Mutation p.R137C 0.31 deleterious(0) possibly_damaging(0.899) TCGA-A6-6780-01 20 45919014 45919014 G A ZMYND8 Missense_Mutation p.A222V 0.48 tolerated(1) benign(0.004) TCGA-A6-6780-01 20 47587671 47587671 G A ARFGEF2 Missense_Mutation p.R402H 0.24 deleterious(0) probably_damaging(0.992) TCGA-A6-6780-01 20 47839818 47839818 A C DDX27 Missense_Mutation p.K136T 0.33 tolerated(0.24) benign(0.007) TCGA-A6-6780-01 20 47990893 47990894 - TCCTGCAA KCNB1 Frame_Shift_Ins p.V402Lfs*6 0.24 TCGA-A6-6780-01 20 49621307 49621307 C T KCNG1 Missense_Mutation p.V271M 0.26 deleterious(0.03) probably_damaging(0.937) TCGA-A6-6780-01 20 55929766 55929766 A G RAE1 Splice_Site p.X31_splice 0.31 TCGA-A6-6780-01 20 56093797 56093797 T C CTCFL Intron 0.45 TCGA-A6-6780-01 20 57769659 57769659 C T ZNF831 Silent p.P1195P 0.36 TCGA-A6-6780-01 20 58467473 58467473 T A SYCP2 Missense_Mutation p.I646L 0.35 tolerated(0.49) benign(0.033) TCGA-A6-6780-01 20 60581730 60581730 A G TAF4 Missense_Mutation p.S687P 0.08 possibly_damaging(0.529) TCGA-A6-6780-01 20 60893526 60893526 C T LAMA5 Missense_Mutation p.R2408H 0.54 benign(0.183) TCGA-A6-6780-01 20 60897166 60897167 - G LAMA5 Frame_Shift_Ins p.L2137Afs*29 0.20 TCGA-A6-6780-01 20 60913649 60913649 G A LAMA5 Missense_Mutation p.A498V 0.39 possibly_damaging(0.547) TCGA-A6-6780-01 20 61167688 61167688 A - C20orf166 Frame_Shift_Del p.N54Mfs*4 0.20 TCGA-A6-6780-01 20 61929267 61929267 G A COL20A1 Missense_Mutation p.G30S 0.18 tolerated(0.4) benign(0.082) TCGA-A6-6780-01 20 62316929 62316929 G - RTEL1 Frame_Shift_Del p.A441Pfs*37 0.23 TCGA-A6-6780-01 20 62701386 62701386 G T TCEA2 Intron 0.62 TCGA-A6-6780-01 20 62705326 62705326 G A RGS19 Silent p.D178D 0.31 TCGA-A6-6780-01 21 15011901 15011901 A G POTED Missense_Mutation p.E492G 0.04 tolerated(0.54) probably_damaging(0.986) TCGA-A6-6780-01 21 22370677 22370677 T C NCAM2 5'UTR 0.50 TCGA-A6-6780-01 21 28337984 28337984 C T ADAMTS5 Missense_Mutation p.A243T 0.29 tolerated(0.58) benign(0.001) TCGA-A6-6780-01 21 30380253 30380253 A T RWDD2B Missense_Mutation p.L185H 0.35 tolerated(0.32) benign(0.004) TCGA-A6-6780-01 21 31803063 31803063 A G KRTAP13-4 Missense_Mutation p.Q157R 0.33 tolerated(1) benign(0.001) TCGA-A6-6780-01 21 31812928 31812928 C A KRTAP15-1 Missense_Mutation p.L95I 0.23 deleterious(0) possibly_damaging(0.714) TCGA-A6-6780-01 21 33296846 33296846 C T HUNK Nonsense_Mutation p.R110* 0.34 TCGA-A6-6780-01 21 33331188 33331188 G A HUNK Silent p.T260T 0.39 TCGA-A6-6780-01 21 33720099 33720099 C T URB1 Missense_Mutation p.A1012T 0.12 tolerated(0.34) benign(0.24) TCGA-A6-6780-01 21 35821937 35821937 G T KCNE1 5'UTR 0.44 TCGA-A6-6780-01 21 37417996 37417996 C T SETD4 Missense_Mutation p.V204I 0.38 tolerated(0.36) benign(0.355) TCGA-A6-6780-01 21 37444461 37444461 G A CBR1 Intron 0.41 TCGA-A6-6780-01 21 41151166 41151166 T C IGSF5 Missense_Mutation p.C290R 0.35 tolerated(0.87) benign(0) TCGA-A6-6780-01 21 41384836 41384836 T C DSCAM 3'UTR 0.34 TCGA-A6-6780-01 21 41725520 41725520 C T DSCAM Missense_Mutation p.G269E 0.16 tolerated(0.71) benign(0.155) TCGA-A6-6780-01 21 47532153 47532153 A G COL6A2 Missense_Mutation p.S126G 0.31 tolerated(0.1) benign(0.032) TCGA-A6-6780-01 21 47552323 47552323 G A COL6A2 Missense_Mutation p.V973M 0.42 deleterious(0) probably_damaging(0.995) TCGA-A6-6780-01 21 47766682 47766682 C T PCNT Missense_Mutation p.A249V 0.40 benign(0.287) TCGA-A6-6780-01 22 17072247 17072247 G T CCT8L2 Silent p.A398A 0.28 TCGA-A6-6780-01 22 17488852 17488852 G - GAB4 Frame_Shift_Del p.E52Rfs*4 0.12 TCGA-A6-6780-01 22 17589971 17589971 C T IL17RA Missense_Mutation p.A621V 0.17 tolerated(0.3) benign(0.002) TCGA-A6-6780-01 22 19026532 19026532 G A DGCR2 Missense_Mutation p.A500V 0.36 tolerated_low_confidence(0.58) benign(0.001) TCGA-A6-6780-01 22 19119675 19119675 C T TSSK2 Missense_Mutation p.P255S 0.36 deleterious(0) probably_damaging(0.959) TCGA-A6-6780-01 22 19504125 19504125 G A CDC45 Missense_Mutation p.V538M 0.41 tolerated(0.45) benign(0.316) TCGA-A6-6780-01 22 19748708 19748708 G A TBX1 Silent p.A105A 0.36 TCGA-A6-6780-01 22 20941013 20941013 G A MED15 3'UTR 0.28 TCGA-A6-6780-01 22 21328538 21328538 C A AIFM3 Intron 0.35 TCGA-A6-6780-01 22 21346634 21346634 G T LZTR1 Missense_Mutation p.K375N 0.43 tolerated(0.64) benign(0.007) TCGA-A6-6780-01 22 22986598 22986598 C T GGTLC2 5'Flank 0.28 TCGA-A6-6780-01 22 24034547 24034547 T C RGL4 Missense_Mutation p.W69R 0.27 deleterious(0) probably_damaging(0.919) TCGA-A6-6780-01 22 24648642 24648642 C T POM121L9P RNA 0.36 TCGA-A6-6780-01 22 24940007 24940007 T C GUCD1 Missense_Mutation p.H144R 0.42 tolerated(0.16) benign(0.241) TCGA-A6-6780-01 22 24982185 24982185 G A FAM211B Missense_Mutation p.A206V 0.13 tolerated(0.15) benign(0.002) TCGA-A6-6780-01 22 25251322 25251322 C T SGSM1 Silent p.D198D 0.35 TCGA-A6-6780-01 22 26168358 26168358 G A MYO18B Missense_Mutation p.E584K 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 22 29383093 29383093 T C ZNRF3 Silent p.N110N 0.32 TCGA-A6-6780-01 22 29709269 29709269 G C RASL10A 3'UTR 0.40 TCGA-A6-6780-01 22 30684752 30684752 T G GATSL3 Missense_Mutation p.S43R 0.35 deleterious(0) probably_damaging(0.964) TCGA-A6-6780-01 22 31302105 31302105 G A OSBP2 Intron 0.34 TCGA-A6-6780-01 22 36681804 36681804 C T MYH9 Missense_Mutation p.R1725Q 0.44 probably_damaging(0.998) TCGA-A6-6780-01 22 36900689 36900689 T C FOXRED2 Missense_Mutation p.I218V 0.36 deleterious(0.03) possibly_damaging(0.889) TCGA-A6-6780-01 22 38121332 38121332 C T TRIOBP Silent p.S923S 0.38 TCGA-A6-6780-01 22 38203289 38203289 T C H1F0 3'UTR 0.34 TCGA-A6-6780-01 22 38642052 38642052 G A TMEM184B Missense_Mutation p.R83C 0.49 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 22 39125596 39125596 C - GTPBP1 Frame_Shift_Del p.P617Hfs*9 0.29 TCGA-A6-6780-01 22 39262968 39262968 C T CBX6 Missense_Mutation p.R162H 0.30 deleterious(0.04) probably_damaging(0.964) TCGA-A6-6780-01 22 39883800 39883800 C T MGAT3 Missense_Mutation p.R150W 0.59 deleterious_low_confidence(0.02) possibly_damaging(0.634) TCGA-A6-6780-01 22 39913406 39913406 G A MIEF1 3'UTR 0.19 TCGA-A6-6780-01 22 40082334 40082334 G A CACNA1I Missense_Mutation p.G2199D 0.40 tolerated_low_confidence(0.09) unknown(0) TCGA-A6-6780-01 22 40417599 40417599 C T FAM83F Missense_Mutation p.A362V 0.35 tolerated(0.09) benign(0.035) TCGA-A6-6780-01 22 40817001 40817001 G - MKL1 Frame_Shift_Del p.P244Rfs*93 0.32 TCGA-A6-6780-01 22 41075557 41075557 C T MCHR1 Silent p.C36C 0.31 TCGA-A6-6780-01 22 41573200 41573200 C T EP300 Missense_Mutation p.R1829C 0.45 probably_damaging(0.982) TCGA-A6-6780-01 22 41635537 41635537 G T CHADL Silent p.R32R 0.31 TCGA-A6-6780-01 22 41970779 41970779 C A CSDC2 Silent p.T114T 0.31 TCGA-A6-6780-01 22 43267471 43267471 A G PACSIN2 Silent p.D451D 0.39 TCGA-A6-6780-01 22 44028062 44028062 T - EFCAB6 Frame_Shift_Del p.S719Vfs*3 0.26 TCGA-A6-6780-01 22 46368070 46368070 C T WNT7B Intron 0.38 TCGA-A6-6780-01 22 46704228 46704228 T C GTSE1 Silent p.D50D 0.24 TCGA-A6-6780-01 22 46751347 46751347 C T TRMU Missense_Mutation p.R294W 0.31 deleterious(0) possibly_damaging(0.773) TCGA-A6-6780-01 22 50471829 50471829 G A TTLL8 Missense_Mutation p.A378V 0.08 tolerated(0.1) probably_damaging(0.943) TCGA-A6-6780-01 22 50656787 50656787 G A TUBGCP6 Nonsense_Mutation p.Q1667* 0.33 TCGA-A6-6780-01 22 50756340 50756340 C T DENND6B Silent p.L123L 0.25 TCGA-A6-6780-01 22 50882810 50882810 A G PPP6R2 3'Flank 0.32 TCGA-A6-6780-01 22 50956415 50956415 T C NCAPH2 Missense_Mutation p.I145T 0.05 deleterious(0.02) benign(0.197) TCGA-A6-6780-01 22 50988644 50988644 C - KLHDC7B 3'UTR 0.21 TCGA-A6-6780-01 22 51160118 51160118 C A SHANK3 Missense_Mutation p.P1302Q 0.40 probably_damaging(0.998) TCGA-A6-6780-01 22 51183710 51183711 - AT ACR 3'UTR 0.47 TCGA-A6-6780-01 2 103148977 103148977 G A SLC9A4 Missense_Mutation p.V743M 0.05 tolerated(0.11) benign(0.034) TCGA-A6-6780-01 2 105472866 105472866 G - POU3F3 Frame_Shift_Del p.G300Afs*69 0.26 TCGA-A6-6780-01 2 11052978 11052978 G A KCNF1 Silent p.A142A 0.08 TCGA-A6-6780-01 2 111408268 111408268 T C BUB1 Silent p.V686V 0.41 TCGA-A6-6780-01 2 111419313 111419313 G T BUB1 Missense_Mutation p.P355T 0.33 tolerated(0.26) benign(0.169) TCGA-A6-6780-01 2 112995976 112995976 G A ZC3H8 Nonsense_Mutation p.Q96* 0.26 TCGA-A6-6780-01 2 11355715 11355715 C T ROCK2 Silent p.A506A 0.32 TCGA-A6-6780-01 2 11775428 11775428 G A GREB1 Missense_Mutation p.R1748Q 0.33 deleterious(0.01) possibly_damaging(0.834) TCGA-A6-6780-01 2 132288159 132288159 C A CCDC74A Silent p.P101P 0.42 TCGA-A6-6780-01 2 133403596 133403596 G - LYPD1 3'UTR 0.24 TCGA-A6-6780-01 2 135988440 135988440 T - ZRANB3 Frame_Shift_Del p.R533Dfs*3 0.28 TCGA-A6-6780-01 2 136609034 136609034 G A MCM6 Nonsense_Mutation p.R619* 0.36 TCGA-A6-6780-01 2 141215217 141215217 G C LRP1B Missense_Mutation p.P3210R 0.30 possibly_damaging(0.804) TCGA-A6-6780-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.59 TCGA-A6-6780-01 2 150438700 150438700 G A MMADHC Missense_Mutation p.S32L 0.36 deleterious(0.02) possibly_damaging(0.871) TCGA-A6-6780-01 2 152321785 152321785 G T RIF1 Missense_Mutation p.M1917I 0.28 tolerated_low_confidence(0.19) benign(0.003) TCGA-A6-6780-01 2 159107286 159107286 T A CCDC148 Nonsense_Mutation p.K417* 0.32 TCGA-A6-6780-01 2 160050933 160050933 A C TANC1 Missense_Mutation p.T970P 0.21 deleterious(0) probably_damaging(0.918) TCGA-A6-6780-01 2 160738669 160738669 A G LY75-CD302 Silent p.D404D 0.36 TCGA-A6-6780-01 2 166351330 166351330 C T CSRNP3 5'UTR 0.59 TCGA-A6-6780-01 2 166852583 166852583 G A SCN1A Silent p.Y1507Y 0.29 TCGA-A6-6780-01 2 170127461 170127462 - A LRP2 Frame_Shift_Ins p.S758Ffs*10 0.29 TCGA-A6-6780-01 2 171804861 171804861 T C GORASP2 Missense_Mutation p.V22A 0.32 deleterious(0) benign(0.014) TCGA-A6-6780-01 2 171902807 171902807 C T TLK1 Missense_Mutation p.R349H 0.30 deleterious(0) probably_damaging(0.953) TCGA-A6-6780-01 2 175202205 175202205 G A SP9 Silent p.A464A 0.06 TCGA-A6-6780-01 2 175979274 175979274 C T ATF2 Intron 0.19 TCGA-A6-6780-01 2 176046092 176046092 G A ATP5G3 Silent p.T10T 0.38 TCGA-A6-6780-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.26 TCGA-A6-6780-01 2 176994454 176994454 C A HOXD8 5'Flank 0.31 TCGA-A6-6780-01 2 178082447 178082447 G A HNRNPA3 Missense_Mutation p.G279S 0.05 tolerated(0.22) unknown(0) TCGA-A6-6780-01 2 178415263 178415263 A G TTC30B 3'UTR 0.56 TCGA-A6-6780-01 2 179315113 179315113 G A PRKRA Missense_Mutation p.P31S 0.32 tolerated(0.06) possibly_damaging(0.725) TCGA-A6-6780-01 2 179395145 179395145 G T TTN Silent p.T35399T 0.06 TCGA-A6-6780-01 2 179401827 179401827 C - TTN Frame_Shift_Del p.A33337Lfs*12 0.26 TCGA-A6-6780-01 2 179413087 179413087 C T TTN Missense_Mutation p.R31089H 0.36 TCGA-A6-6780-01 2 179466609 179466609 C A TTN Missense_Mutation p.Q18434H 0.35 TCGA-A6-6780-01 2 179569347 179569347 A G TTN Missense_Mutation p.I9951T 0.41 TCGA-A6-6780-01 2 179579976 179579976 C T TTN Missense_Mutation p.R8646H 0.06 TCGA-A6-6780-01 2 179843400 179843400 A G CCDC141 Silent p.A76A 0.26 TCGA-A6-6780-01 2 179986628 179986628 T - SESTD1 Frame_Shift_Del p.G438Vfs*20 0.15 TCGA-A6-6780-01 2 18113473 18113473 C T KCNS3 Missense_Mutation p.L400F 0.39 deleterious(0) probably_damaging(0.976) TCGA-A6-6780-01 2 190340092 190340092 A G WDR75 Silent p.K814K 0.36 TCGA-A6-6780-01 2 197523586 197523586 T C CCDC150 Splice_Site p.X215_splice 0.25 TCGA-A6-6780-01 2 198572837 198572837 T C MARS2 3'UTR 0.29 TCGA-A6-6780-01 2 204161693 204161693 C A CYP20A1 3'UTR 0.33 TCGA-A6-6780-01 2 204599558 204599558 C - CD28 Frame_Shift_Del p.R197Afs*83 0.24 TCGA-A6-6780-01 2 20518333 20518333 T C PUM2 Missense_Mutation p.D42G 0.45 deleterious_low_confidence(0.01) probably_damaging(0.911) TCGA-A6-6780-01 2 209358562 209358562 G T PTH2R 3'UTR 0.39 TCGA-A6-6780-01 2 210561666 210561667 - A MAP2 Frame_Shift_Ins p.T1474Nfs*22 0.32 TCGA-A6-6780-01 2 211179707 211179707 C A MYL1 Silent p.P20P 0.35 TCGA-A6-6780-01 2 215809803 215809803 G A ABCA12 Missense_Mutation p.P2422L 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 2 218682833 218682833 G T TNS1 Missense_Mutation p.L1304I 0.32 tolerated(0.42) benign(0.026) TCGA-A6-6780-01 2 219320402 219320402 G A USP37 Missense_Mutation p.A918V 0.44 tolerated(0.23) benign(0.212) TCGA-A6-6780-01 2 219738170 219738170 G A WNT6 Missense_Mutation p.R234H 0.29 deleterious(0.02) benign(0.094) TCGA-A6-6780-01 2 220309843 220309843 G A SPEG Missense_Mutation p.A259T 0.38 benign(0.003) TCGA-A6-6780-01 2 220326764 220326765 - C SPEG Frame_Shift_Ins p.T870Hfs*52 0.32 TCGA-A6-6780-01 2 224462371 224462371 C A SCG2 Nonsense_Mutation p.E544* 0.38 TCGA-A6-6780-01 2 230341947 230341947 C T DNER Silent p.Q390Q 0.30 TCGA-A6-6780-01 2 231683326 231683326 C T CAB39 Silent p.N311N 0.26 TCGA-A6-6780-01 2 231927248 231927248 C T PSMD1 Missense_Mutation p.R55W 0.35 deleterious(0) benign(0.424) TCGA-A6-6780-01 2 231927367 231927367 T C PSMD1 Silent p.S94S 0.32 TCGA-A6-6780-01 2 232263314 232263314 C T B3GNT7 Missense_Mutation p.P295L 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.08 TCGA-A6-6780-01 2 234378026 234378026 G A DGKD Missense_Mutation p.V1189M 0.32 deleterious(0) probably_damaging(0.939) TCGA-A6-6780-01 2 236706491 236706491 C T AGAP1 Silent p.S254S 0.48 TCGA-A6-6780-01 2 236839563 236839563 C T AGAP1 Silent p.S493S 0.29 TCGA-A6-6780-01 2 237489245 237489245 C T ACKR3 Missense_Mutation p.T46M 0.31 deleterious(0.02) benign(0.437) TCGA-A6-6780-01 2 237489593 237489593 G A ACKR3 Missense_Mutation p.R162H 0.37 tolerated(0.07) benign(0.159) TCGA-A6-6780-01 2 23785339 23785339 G A KLHL29 Silent p.A91A 0.35 TCGA-A6-6780-01 2 238536224 238536224 C T AC096574.5 3'Flank 0.17 TCGA-A6-6780-01 2 240061383 240061383 C A HDAC4 Silent p.A325A 0.38 TCGA-A6-6780-01 2 240500155 240500155 G C AC079612.1 Silent p.G12G 0.40 TCGA-A6-6780-01 2 241621650 241621650 G A AQP12B Missense_Mutation p.T202M 0.26 deleterious(0) possibly_damaging(0.839) TCGA-A6-6780-01 2 26915840 26915840 C T KCNK3 Missense_Mutation p.P33S 0.33 tolerated(0.79) benign(0.004) TCGA-A6-6780-01 2 27461307 27461307 A G CAD Silent p.L1623L 0.37 TCGA-A6-6780-01 2 27884181 27884181 C T SUPT7L Missense_Mutation p.R30H 0.44 deleterious(0) probably_damaging(0.982) TCGA-A6-6780-01 2 29245040 29245040 G A FAM179A Silent p.A459A 0.31 TCGA-A6-6780-01 2 33412140 33412140 A C LTBP1 Silent p.G473G 0.32 TCGA-A6-6780-01 2 33442707 33442708 - C LTBP1 Frame_Shift_Ins p.K599Qfs*19 0.23 TCGA-A6-6780-01 2 38302220 38302220 G T CYP1B1 Missense_Mutation p.H104Q 0.19 deleterious(0.01) benign(0.072) TCGA-A6-6780-01 2 38829599 38829599 C T HNRNPLL Missense_Mutation p.G52D 0.16 tolerated(0.16) benign(0.158) TCGA-A6-6780-01 2 45616572 45616572 T C SRBD1 Silent p.K955K 0.37 TCGA-A6-6780-01 2 47184061 47184061 C T TTC7A Silent p.Y144Y 0.36 TCGA-A6-6780-01 2 55800798 55800798 T C SMEK2 Silent p.R574R 0.30 TCGA-A6-6780-01 2 5833774 5833774 C T SOX11 Silent p.G307G 0.40 TCGA-A6-6780-01 2 58392928 58392928 C T FANCL Missense_Mutation p.D213N 0.25 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 2 5840497 5840498 - T SOX11 3'UTR 0.28 TCGA-A6-6780-01 2 5841308 5841308 T - SOX11 3'UTR 0.30 TCGA-A6-6780-01 2 61633020 61633020 T - USP34 Frame_Shift_Del p.K125Nfs*10 0.33 TCGA-A6-6780-01 2 63283274 63283274 T C OTX1 Silent p.H296H 0.22 TCGA-A6-6780-01 2 64112731 64112731 G T UGP2 Missense_Mutation p.R195M 0.35 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 2 65315465 65315465 A - RAB1A 3'UTR 0.43 TCGA-A6-6780-01 2 66667033 66667034 - C MEIS1 Frame_Shift_Ins p.R102Pfs*18 0.24 TCGA-A6-6780-01 2 68546479 68546479 A T CNRIP1 Silent p.P18P 0.30 TCGA-A6-6780-01 2 68691329 68691329 T - FBXO48 3'UTR 0.38 TCGA-A6-6780-01 2 71060867 71060867 T - CD207 Frame_Shift_Del p.S159Vfs*9 0.22 TCGA-A6-6780-01 2 71780968 71780968 C T DYSF Silent p.N672N 0.36 TCGA-A6-6780-01 2 72360208 72360208 G T CYP26B1 Missense_Mutation p.L364M 0.30 tolerated(0.09) probably_damaging(0.983) TCGA-A6-6780-01 2 74143714 74143714 T C ACTG2 Missense_Mutation p.M270T 0.28 deleterious_low_confidence(0.04) benign(0.013) TCGA-A6-6780-01 2 79971659 79971659 A C CTNNA2 Missense_Mutation p.Q83H 0.21 deleterious(0.02) benign(0.18) TCGA-A6-6780-01 2 85532438 85532438 C T TCF7L1 Missense_Mutation p.P301S 0.40 tolerated(0.06) benign(0.114) TCGA-A6-6780-01 2 85549781 85549781 A - TGOLN2 3'UTR 0.29 TCGA-A6-6780-01 2 86832415 86832415 A - RNF103 Frame_Shift_Del p.F203Lfs*4 0.25 TCGA-A6-6780-01 2 87042734 87042734 G A CD8B Missense_Mutation p.T243I 0.33 deleterious_low_confidence(0) unknown(0) TCGA-A6-6780-01 2 90154070 90154070 T G IGKV3D-15 Missense_Mutation p.L53V 0.27 tolerated(0.11) benign(0.076) TCGA-A6-6780-01 2 96696530 96696530 G - GPAT2 Frame_Shift_Del p.C107Afs*35 0.32 TCGA-A6-6780-01 2 96957583 96957583 C T SNRNP200 Missense_Mutation p.R739Q 0.32 deleterious(0.01) probably_damaging(0.953) TCGA-A6-6780-01 2 97428042 97428043 - C CNNM4 Frame_Shift_Ins p.L438Pfs*9 0.26 TCGA-A6-6780-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.27 TCGA-A6-6780-01 3 10018676 10018677 - T EMC3 Frame_Shift_Ins p.T91Nfs*2 0.29 TCGA-A6-6780-01 3 100354559 100354559 T C GPR128 Silent p.S162S 0.18 TCGA-A6-6780-01 3 10094132 10094132 T G FANCD2 Missense_Mutation p.L536R 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 3 101540920 101540920 G A NXPE3 3'UTR 0.33 TCGA-A6-6780-01 3 108229398 108229398 A - MYH15 Frame_Shift_Del p.W14Gfs*5 0.25 TCGA-A6-6780-01 3 111313356 111313356 G A ZBED2 5'UTR 0.28 TCGA-A6-6780-01 3 113005752 113005752 T A BOC 3'UTR 0.15 TCGA-A6-6780-01 3 113082096 113082096 T C WDR52 Missense_Mutation p.I944V 0.04 tolerated(0.12) benign(0.108) TCGA-A6-6780-01 3 114058003 114058004 GG - ZBTB20 Frame_Shift_Del p.P692Cfs*33 0.30 TCGA-A6-6780-01 3 118621786 118621786 A G IGSF11 Missense_Mutation p.C293R 0.36 deleterious(0.03) benign(0.001) TCGA-A6-6780-01 3 120121744 120121744 G A FSTL1 Missense_Mutation p.T239M 0.29 tolerated(0.08) benign(0.075) TCGA-A6-6780-01 3 121212355 121212355 A G POLQ Missense_Mutation p.V831A 0.41 tolerated(0.64) benign(0.002) TCGA-A6-6780-01 3 121437282 121437282 C G GOLGB1 Missense_Mutation p.V280L 0.33 possibly_damaging(0.789) TCGA-A6-6780-01 3 122003605 122003605 C T CASR Missense_Mutation p.P945L 0.24 tolerated_low_confidence(0.16) benign(0.081) TCGA-A6-6780-01 3 122447286 122447286 C T PARP14 Missense_Mutation p.H1750Y 0.35 tolerated(0.1) benign(0.001) TCGA-A6-6780-01 3 122843155 122843155 G A PDIA5 Silent p.G246G 0.40 TCGA-A6-6780-01 3 124132316 124132316 G T KALRN Splice_Site p.X781_splice 0.32 TCGA-A6-6780-01 3 124457159 124457159 A G UMPS Intron 0.33 TCGA-A6-6780-01 3 124646425 124646425 A C MUC13 Silent p.P155P 0.40 TCGA-A6-6780-01 3 124728604 124728604 G T HEG1 Silent p.S1046S 0.28 TCGA-A6-6780-01 3 124826955 124826955 T C SLC12A8 Missense_Mutation p.T359A 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-A6-6780-01 3 124952386 124952386 A T ZNF148 Missense_Mutation p.I395N 0.34 deleterious(0.01) benign(0.319) TCGA-A6-6780-01 3 125695871 125695871 G A ROPN1B Missense_Mutation p.A87T 0.05 tolerated(0.56) benign(0.033) TCGA-A6-6780-01 3 128181606 128181606 G A DNAJB8 Silent p.H161H 0.45 TCGA-A6-6780-01 3 130287322 130287322 G A COL6A6 Missense_Mutation p.G759S 0.52 tolerated(0.05) probably_damaging(0.998) TCGA-A6-6780-01 3 130368261 130368261 C T COL6A6 Missense_Mutation p.T1863M 0.28 tolerated(0.1) possibly_damaging(0.782) TCGA-A6-6780-01 3 13377012 13377012 G T NUP210 Missense_Mutation p.P1262H 0.36 tolerated(0.07) probably_damaging(0.971) TCGA-A6-6780-01 3 136056817 136056817 C A STAG1 3'UTR 0.33 TCGA-A6-6780-01 3 138195072 138195072 T - ESYT3 Frame_Shift_Del p.F827Lfs*7 0.29 TCGA-A6-6780-01 3 138763635 138763638 GCTG - PRR23C 5'UTR 0.35 TCGA-A6-6780-01 3 139279992 139279992 G A NMNAT3 Nonsense_Mutation p.R170* 0.40 TCGA-A6-6780-01 3 142681573 142681573 G A PAQR9 Silent p.C202C 0.38 TCGA-A6-6780-01 3 149245656 149245656 A G WWTR1 Missense_Mutation p.I291T 0.34 tolerated(0.07) benign(0.05) TCGA-A6-6780-01 3 15282025 15282025 T C CAPN7 Missense_Mutation p.W485R 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 3 153847398 153847398 G A ARHGEF26 Missense_Mutation p.A387T 0.35 deleterious(0) possibly_damaging(0.821) TCGA-A6-6780-01 3 154889903 154889903 T C MME Intron 0.30 TCGA-A6-6780-01 3 156742711 156742711 A G LEKR1 Missense_Mutation p.K456E 0.35 deleterious(0.01) possibly_damaging(0.486) TCGA-A6-6780-01 3 157146274 157146274 T C VEPH1 Missense_Mutation p.N178S 0.49 deleterious(0) benign(0.18) TCGA-A6-6780-01 3 158289069 158289069 G A MLF1 5'UTR 0.40 TCGA-A6-6780-01 3 158539916 158539916 C A MFSD1 Missense_Mutation p.P404H 0.28 deleterious(0) probably_damaging(0.981) TCGA-A6-6780-01 3 164712047 164712047 A G SI Silent p.H1613H 0.34 TCGA-A6-6780-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.26 TCGA-A6-6780-01 3 169985771 169985771 G A PRKCI Missense_Mutation p.A145T 0.22 deleterious(0.02) benign(0.371) TCGA-A6-6780-01 3 171338182 171338182 T C PLD1 Missense_Mutation p.I908V 0.26 deleterious(0.02) benign(0.044) TCGA-A6-6780-01 3 172096209 172096210 - C FNDC3B Frame_Shift_Ins p.T1056Hfs*16 0.35 TCGA-A6-6780-01 3 175345104 175345104 G A NAALADL2 Missense_Mutation p.R609H 0.53 deleterious(0.04) benign(0.004) TCGA-A6-6780-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-A6-6780-01 3 179085318 179085318 T C MFN1 Missense_Mutation p.F282S 0.41 deleterious(0) probably_damaging(0.986) TCGA-A6-6780-01 3 179123007 179123007 A G GNB4 Missense_Mutation p.V296A 0.33 tolerated(0.09) possibly_damaging(0.515) TCGA-A6-6780-01 3 179132694 179132694 G A GNB4 Nonsense_Mutation p.R137* 0.30 TCGA-A6-6780-01 3 180369272 180369272 C G CCDC39 Missense_Mutation p.E362Q 0.27 tolerated(0.36) benign(0.005) TCGA-A6-6780-01 3 183368259 183368259 T - KLHL24 Frame_Shift_Del p.F40Lfs*74 0.22 TCGA-A6-6780-01 3 183858497 183858497 A C EIF2B5 Missense_Mutation p.I379L 0.06 deleterious(0.02) benign(0.043) TCGA-A6-6780-01 3 183952099 183952099 A G VWA5B2 Missense_Mutation p.H245R 0.32 tolerated(0.34) possibly_damaging(0.658) TCGA-A6-6780-01 3 184045002 184045002 A G EIF4G1 Splice_Site p.X1150_splice 0.36 TCGA-A6-6780-01 3 184052765 184052766 - G EIF4G1 3'UTR 0.24 TCGA-A6-6780-01 3 184090449 184090449 G A THPO Missense_Mutation p.T305M 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.791) TCGA-A6-6780-01 3 18419683 18419683 C A SATB1 Missense_Mutation p.K518N 0.33 deleterious(0) probably_damaging(0.994) TCGA-A6-6780-01 3 185214717 185214717 G T TMEM41A Missense_Mutation p.L58I 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-A6-6780-01 3 185304182 185304182 C T SENP2 5'UTR 0.41 TCGA-A6-6780-01 3 186917595 186917595 G A RTP1 Missense_Mutation p.V177M 0.29 tolerated(0.05) benign(0.269) TCGA-A6-6780-01 3 186917625 186917625 C T RTP1 Missense_Mutation p.R187C 0.07 deleterious(0.04) benign(0.081) TCGA-A6-6780-01 3 187446919 187446919 A C BCL6 Missense_Mutation p.L425R 0.07 tolerated(0.53) benign(0.008) TCGA-A6-6780-01 3 190986180 190986180 T - UTS2B 3'UTR 0.26 TCGA-A6-6780-01 3 193082002 193082002 C T ATP13A5 Missense_Mutation p.C44Y 0.33 deleterious(0.03) benign(0.424) TCGA-A6-6780-01 3 194118665 194118665 G A GP5 Missense_Mutation p.A116V 0.40 deleterious(0.03) benign(0.426) TCGA-A6-6780-01 3 197508924 197508926 TTA - FYTTD1 3'UTR 0.40 TCGA-A6-6780-01 3 25635018 25635018 A G RARB Missense_Mutation p.T271A 0.38 deleterious(0.05) possibly_damaging(0.867) TCGA-A6-6780-01 3 32031172 32031172 A C ZNF860 Missense_Mutation p.I201L 0.38 deleterious(0.02) benign(0.01) TCGA-A6-6780-01 3 37038192 37038192 G A MLH1 Missense_Mutation p.G67R 0.69 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 3 38039624 38039625 - C VILL Frame_Shift_Ins p.L273Tfs*30 0.45 TCGA-A6-6780-01 3 3888619 3888619 T - LRRN1 3'UTR 0.25 TCGA-A6-6780-01 3 39228861 39228861 C A XIRP1 Missense_Mutation p.Q692H 0.45 deleterious(0.04) benign(0.23) TCGA-A6-6780-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.74 deleterious(0) probably_damaging(0.954) TCGA-A6-6780-01 3 43389425 43389425 C T SNRK Silent p.S558S 0.31 TCGA-A6-6780-01 3 45785050 45785050 C A SACM1L Silent p.A551A 0.33 TCGA-A6-6780-01 3 46479566 46479566 A G LTF Missense_Mutation p.S655P 0.33 deleterious(0.02) possibly_damaging(0.832) TCGA-A6-6780-01 3 46728573 46728573 G A ALS2CL Missense_Mutation p.S145L 0.07 tolerated(0.27) benign(0.251) TCGA-A6-6780-01 3 47043470 47043470 C T NBEAL2 Missense_Mutation p.R1615C 0.37 deleterious(0.02) possibly_damaging(0.462) TCGA-A6-6780-01 3 47043759 47043759 G A NBEAL2 Missense_Mutation p.R1711H 0.46 deleterious(0.01) probably_damaging(0.919) TCGA-A6-6780-01 3 47456070 47456070 T C SCAP Missense_Mutation p.I1127V 0.46 tolerated(0.17) benign(0.004) TCGA-A6-6780-01 3 48626110 48626110 C T COL7A1 Missense_Mutation p.R851H 0.37 unknown(0) TCGA-A6-6780-01 3 48665399 48665399 C T SLC26A6 Missense_Mutation p.V625I 0.23 tolerated(0.28) benign(0.056) TCGA-A6-6780-01 3 48694172 48694172 C T CELSR3 Missense_Mutation p.R1453H 0.50 deleterious(0.03) probably_damaging(0.97) TCGA-A6-6780-01 3 48810504 48810504 T C PRKAR2A Missense_Mutation p.T194A 0.40 tolerated(0.65) benign(0.003) TCGA-A6-6780-01 3 48956479 48956480 - G ARIH2OS Frame_Shift_Ins p.Q35Pfs*100 0.33 TCGA-A6-6780-01 3 49450044 49450044 A T TCTA Missense_Mutation p.N62I 0.06 deleterious(0.04) benign(0.075) TCGA-A6-6780-01 3 49691211 49691211 C T BSN Missense_Mutation p.R1408C 0.37 unknown(0) TCGA-A6-6780-01 3 49724387 49724387 G A MST1 Missense_Mutation p.P241S 0.38 deleterious(0.02) possibly_damaging(0.661) TCGA-A6-6780-01 3 49758254 49758254 A G RNF123 Missense_Mutation p.D1222G 0.38 tolerated(0.06) benign(0.001) TCGA-A6-6780-01 3 49765623 49765623 G A IP6K1 Silent p.D235D 0.47 TCGA-A6-6780-01 3 51399428 51399428 G T DOCK3 Missense_Mutation p.Q1715H 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.453) TCGA-A6-6780-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.33 TCGA-A6-6780-01 3 51743208 51743208 A G GRM2 Missense_Mutation p.D70G 0.33 deleterious(0.02) possibly_damaging(0.666) TCGA-A6-6780-01 3 52088282 52088282 C - DUSP7 Frame_Shift_Del p.G209Afs*131 0.28 TCGA-A6-6780-01 3 52292580 52292580 A G WDR82 Missense_Mutation p.M295T 0.03 tolerated(0.05) benign(0.248) TCGA-A6-6780-01 3 52360256 52360256 G T DNAH1 Missense_Mutation p.Q169H 0.31 benign(0.006) TCGA-A6-6780-01 3 52623187 52623187 T - PBRM1 Frame_Shift_Del p.N955Tfs*53 0.26 TCGA-A6-6780-01 3 52724621 52724621 G T GNL3 Missense_Mutation p.K185N 0.08 deleterious(0) possibly_damaging(0.883) TCGA-A6-6780-01 3 52729510 52729511 - A GLT8D1 Frame_Shift_Ins p.V247Cfs*14 0.25 TCGA-A6-6780-01 3 52825825 52825825 C - ITIH1 Frame_Shift_Del p.P879Rfs*55 0.25 TCGA-A6-6780-01 3 53223211 53223211 G A PRKCD Silent p.T564T 0.43 TCGA-A6-6780-01 3 53694272 53694272 C T CACNA1D Nonsense_Mutation p.R246* 0.31 TCGA-A6-6780-01 3 57330449 57330449 A G ASB14 5'Flank 0.44 TCGA-A6-6780-01 3 57368522 57368522 T C DNAH12 Missense_Mutation p.I82V 0.28 tolerated(0.5) benign(0.073) TCGA-A6-6780-01 3 58092574 58092574 G A FLNB Missense_Mutation p.A639T 0.22 tolerated(0.1) benign(0.011) TCGA-A6-6780-01 3 71733616 71733616 T - EIF4E3 3'UTR 0.53 TCGA-A6-6780-01 3 75480031 75480031 C T RP11-803B1.8 5'Flank 0.36 TCGA-A6-6780-01 3 93733285 93733285 T - STX19 Frame_Shift_Del p.R277Efs*? 0.25 TCGA-A6-6780-01 3 96533723 96533723 G T EPHA6 Nonsense_Mutation p.E86* 0.38 TCGA-A6-6780-01 3 9934900 9934900 C T JAGN1 Missense_Mutation p.R131C 0.36 deleterious(0) possibly_damaging(0.765) TCGA-A6-6780-01 3 9959657 9959657 G A IL17RC Missense_Mutation p.V131M 0.38 deleterious(0.01) probably_damaging(0.962) TCGA-A6-6780-01 4 102751223 102751223 G A BANK1 Missense_Mutation p.S110N 0.04 tolerated(0.56) possibly_damaging(0.883) TCGA-A6-6780-01 4 120432289 120432289 T C PDE5A Silent p.R667R 0.34 TCGA-A6-6780-01 4 122085377 122085378 - A TNIP3 Intron 0.33 TCGA-A6-6780-01 4 122831453 122831453 G T TRPC3 Missense_Mutation p.L550M 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-A6-6780-01 4 123274080 123274080 G A KIAA1109 Missense_Mutation p.R4624Q 0.06 probably_damaging(0.999) TCGA-A6-6780-01 4 128861118 128861118 T - MFSD8 Frame_Shift_Del p.G197Vfs*2 0.23 TCGA-A6-6780-01 4 129120719 129120719 A C LARP1B Missense_Mutation p.Q710P 0.33 deleterious(0) possibly_damaging(0.522) TCGA-A6-6780-01 4 134072945 134072945 C - PCDH10 Frame_Shift_Del p.Q552Rfs*13 0.33 TCGA-A6-6780-01 4 140441536 140441536 A G SETD7 Silent p.A219A 0.08 TCGA-A6-6780-01 4 147628320 147628320 T - TTC29 Frame_Shift_Del p.N473Mfs*35 0.20 TCGA-A6-6780-01 4 152498756 152498756 C T FAM160A1 Missense_Mutation p.P87L 0.29 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 4 154625256 154625256 G T TLR2 Missense_Mutation p.L399F 0.24 tolerated(0.08) possibly_damaging(0.475) TCGA-A6-6780-01 4 155242156 155242156 C A DCHS2 Missense_Mutation p.K1010N 0.33 deleterious(0) probably_damaging(0.954) TCGA-A6-6780-01 4 155253853 155253853 G T DCHS2 Missense_Mutation p.F670L 0.35 tolerated(0.96) benign(0) TCGA-A6-6780-01 4 155411926 155411926 C T DCHS2 Silent p.P194P 0.34 TCGA-A6-6780-01 4 15552445 15552445 A G CC2D2A Splice_Site p.X728_splice 0.33 TCGA-A6-6780-01 4 15603063 15603063 C G CC2D2A 3'UTR 0.26 TCGA-A6-6780-01 4 156136333 156136335 AAG - NPY2R 3'UTR 0.34 TCGA-A6-6780-01 4 159789759 159789759 A G FNIP2 Silent p.A657A 0.33 TCGA-A6-6780-01 4 169013868 169013868 A G ANXA10 Missense_Mutation p.Y6C 0.43 tolerated(0.13) benign(0.319) TCGA-A6-6780-01 4 169351699 169351699 G A DDX60L Missense_Mutation p.T536M 0.10 deleterious(0) possibly_damaging(0.608) TCGA-A6-6780-01 4 170428203 170428203 T - NEK1 Frame_Shift_Del p.V665Cfs*34 0.26 TCGA-A6-6780-01 4 174219284 174219284 G A GALNT7 Silent p.P328P 0.29 TCGA-A6-6780-01 4 178355632 178355632 T C AGA Missense_Mutation p.D237G 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 4 183960062 183960062 T C FAM92A1P2 RNA 0.31 TCGA-A6-6780-01 4 23797528 23797528 C A PPARGC1A Missense_Mutation p.D772Y 0.23 deleterious(0.01) unknown(0) TCGA-A6-6780-01 4 24556366 24556368 AAG - DHX15 In_Frame_Del p.L354del 0.44 TCGA-A6-6780-01 4 25848932 25848932 C T SEL1L3 Silent p.Q239Q 0.36 TCGA-A6-6780-01 4 2661593 2661593 C - FAM193A Frame_Shift_Del p.V231Sfs*81 0.38 TCGA-A6-6780-01 4 2831731 2831731 C - SH3BP2 Frame_Shift_Del p.P425Qfs*21 0.20 TCGA-A6-6780-01 4 2952857 2952857 C T NOP14 Missense_Mutation p.R329H 0.17 tolerated(0.2) benign(0.024) TCGA-A6-6780-01 4 37592068 37592068 C - C4orf19 Frame_Shift_Del p.P132Qfs*27 0.31 TCGA-A6-6780-01 4 39206803 39206804 - T WDR19 Frame_Shift_Ins p.L214Ffs*5 0.30 TCGA-A6-6780-01 4 39878678 39878678 T G PDS5A Missense_Mutation p.E696D 0.43 tolerated(0.37) benign(0.149) TCGA-A6-6780-01 4 40351148 40351148 C T CHRNA9 Silent p.V205V 0.36 TCGA-A6-6780-01 4 40440671 40440671 G A RBM47 Silent p.R80R 0.29 TCGA-A6-6780-01 4 41016108 41016108 C G APBB2 Missense_Mutation p.K109N 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 4 41608016 41608016 C T LIMCH1 Nonsense_Mutation p.R161* 0.27 TCGA-A6-6780-01 4 42153897 42153897 G - BEND4 Frame_Shift_Del p.G91Afs*23 0.65 TCGA-A6-6780-01 4 4285458 4285458 A - LYAR Frame_Shift_Del p.F4Lfs*10 0.21 TCGA-A6-6780-01 4 437344 437344 G T ZNF721 Silent p.P304P 0.30 TCGA-A6-6780-01 4 44691358 44691358 A G GUF1 Silent p.K378K 0.08 TCGA-A6-6780-01 4 48151599 48151599 A G TEC Silent p.I327I 0.37 TCGA-A6-6780-01 4 48169916 48169916 C T TEC Missense_Mutation p.V184I 0.35 deleterious(0.05) benign(0.039) TCGA-A6-6780-01 4 48424085 48424085 C T SLAIN2 Silent p.G579G 0.44 TCGA-A6-6780-01 4 48485979 48485979 G A SLC10A4 Missense_Mutation p.R134H 0.26 tolerated(0.55) probably_damaging(0.976) TCGA-A6-6780-01 4 48559610 48559610 G A FRYL Nonsense_Mutation p.R1329* 0.36 TCGA-A6-6780-01 4 48853939 48853939 G A OCIAD1 Missense_Mutation p.S165N 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-A6-6780-01 4 53463564 53463564 A G USP46 3'UTR 0.56 TCGA-A6-6780-01 4 5564652 5564652 A C EVC2 Missense_Mutation p.S1284A 0.24 tolerated(0.12) benign(0.038) TCGA-A6-6780-01 4 55958809 55958809 C T KDR Missense_Mutation p.G1015D 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 4 57261458 57261458 A G PPAT 3'UTR 0.36 TCGA-A6-6780-01 4 6064099 6064099 G A JAKMIP1 Silent p.R500R 0.26 TCGA-A6-6780-01 4 62910234 62910234 G A LPHN3 Missense_Mutation p.G1193R 0.26 deleterious(0) probably_damaging(0.993) TCGA-A6-6780-01 4 6588730 6588730 C T MAN2B2 Silent p.H133H 0.43 TCGA-A6-6780-01 4 6719302 6719302 A G BLOC1S4 3'UTR 0.30 TCGA-A6-6780-01 4 68784830 68784830 G A TMPRSS11A Silent p.Y274Y 0.32 TCGA-A6-6780-01 4 6996004 6996004 G A TBC1D14 Missense_Mutation p.A313T 0.35 deleterious(0) possibly_damaging(0.703) TCGA-A6-6780-01 4 71588258 71588259 - TG RUFY3 5'UTR 0.26 TCGA-A6-6780-01 4 74702393 74702393 A C CXCL6 5'UTR 0.09 TCGA-A6-6780-01 4 77651959 77651959 G A SHROOM3 Missense_Mutation p.R153H 0.42 deleterious(0.01) possibly_damaging(0.877) TCGA-A6-6780-01 4 780350 780350 C T CPLX1 Missense_Mutation p.S115N 0.36 tolerated(0.1) benign(0.146) TCGA-A6-6780-01 4 79371456 79371456 C T FRAS1 Silent p.G2142G 0.47 TCGA-A6-6780-01 4 79429979 79429979 C - FRAS1 Frame_Shift_Del p.C3202Afs*11 0.21 TCGA-A6-6780-01 4 8307918 8307919 - C HTRA3 3'UTR 0.31 TCGA-A6-6780-01 4 84227440 84227440 T G HPSE Silent p.R374R 0.40 TCGA-A6-6780-01 4 85654612 85654612 T C WDFY3 Missense_Mutation p.K2382E 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-A6-6780-01 4 8607857 8607857 G A CPZ Missense_Mutation p.R284H 0.40 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 4 88535460 88535460 G A DSPP Missense_Mutation p.S549N 0.33 unknown(0) TCGA-A6-6780-01 4 88902728 88902728 C T SPP1 Silent p.N106N 0.41 TCGA-A6-6780-01 4 89013308 89013308 A - ABCG2 3'UTR 0.31 TCGA-A6-6780-01 4 93225695 93225695 A - GRID2 5'UTR 0.25 TCGA-A6-6780-01 4 96761326 96761326 G A PDHA2 Missense_Mutation p.V9M 0.25 tolerated(0.12) benign(0.086) TCGA-A6-6780-01 4 9785349 9785349 G C DRD5 3'UTR 0.22 TCGA-A6-6780-01 4 9785421 9785421 G T DRD5 3'UTR 0.20 TCGA-A6-6780-01 5 102285661 102285661 G A PAM Silent p.R260R 0.34 TCGA-A6-6780-01 5 102361017 102361017 A - PAM Frame_Shift_Del p.K891Nfs*32 0.26 TCGA-A6-6780-01 5 10265062 10265062 A G CCT5 3'UTR 0.36 TCGA-A6-6780-01 5 10433740 10433740 C T MARCH6 Missense_Mutation p.R893W 0.08 deleterious(0.01) probably_damaging(0.975) TCGA-A6-6780-01 5 106716999 106716999 A G EFNA5 Missense_Mutation p.L215S 0.32 deleterious_low_confidence(0) unknown(0) TCGA-A6-6780-01 5 107006366 107006366 G T EFNA5 5'UTR 0.46 TCGA-A6-6780-01 5 115818244 115818244 A G SEMA6A Silent p.Y330Y 0.35 TCGA-A6-6780-01 5 121356362 121356362 A C SRFBP1 Missense_Mutation p.E311A 0.36 deleterious(0.02) benign(0.009) TCGA-A6-6780-01 5 128864338 128864338 G A ADAMTS19 Missense_Mutation p.M426I 0.31 tolerated(1) benign(0.001) TCGA-A6-6780-01 5 128864363 128864363 A G ADAMTS19 Missense_Mutation p.I435V 0.33 tolerated(0.51) benign(0.041) TCGA-A6-6780-01 5 129243879 129243879 T C CHSY3 Silent p.P304P 0.29 TCGA-A6-6780-01 5 132158969 132158969 C T SHROOM1 Silent p.A733A 0.48 TCGA-A6-6780-01 5 132209691 132209691 G A LEAP2 Missense_Mutation p.R36Q 0.28 deleterious(0.04) benign(0.132) TCGA-A6-6780-01 5 133896552 133896552 G A JADE2 Missense_Mutation p.D197N 0.35 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 5 133996828 133996828 G A SEC24A Silent p.L39L 0.31 TCGA-A6-6780-01 5 13776574 13776574 C T DNAH5 Missense_Mutation p.R3116Q 0.30 possibly_damaging(0.553) TCGA-A6-6780-01 5 137803130 137803130 C T EGR1 Missense_Mutation p.T331M 0.34 deleterious(0.01) unknown(0) TCGA-A6-6780-01 5 137803261 137803261 C T EGR1 Missense_Mutation p.R375C 0.30 deleterious(0) unknown(0) TCGA-A6-6780-01 5 138268365 138268365 G T CTNNA1 Missense_Mutation p.E799D 0.29 tolerated(0.88) benign(0.02) TCGA-A6-6780-01 5 138728822 138728822 G A PROB1 Missense_Mutation p.A650V 0.28 tolerated_low_confidence(0.21) benign(0.029) TCGA-A6-6780-01 5 138730578 138730578 C - PROB1 Frame_Shift_Del p.A65Rfs*107 0.34 TCGA-A6-6780-01 5 139060059 139060059 C T CXXC5 5'UTR 0.28 TCGA-A6-6780-01 5 139060271 139060271 C - CXXC5 Frame_Shift_Del p.E57Sfs*40 0.23 TCGA-A6-6780-01 5 140166907 140166907 T C PCDHA1 Silent p.N344N 0.36 TCGA-A6-6780-01 5 140203409 140203409 G A PCDHA5 Silent p.A683A 0.34 TCGA-A6-6780-01 5 140216031 140216031 G A PCDHA7 Missense_Mutation p.G688D 0.33 deleterious_low_confidence(0.05) benign(0.025) TCGA-A6-6780-01 5 140346876 140346876 C T PCDHAC2 Silent p.P175P 0.32 TCGA-A6-6780-01 5 140482208 140482208 C T PCDHB3 Missense_Mutation p.H659Y 0.29 deleterious_low_confidence(0) benign(0.199) TCGA-A6-6780-01 5 140555573 140555573 T C PCDHB7 3'UTR 0.15 TCGA-A6-6780-01 5 140616078 140616078 C T PCDHB18 RNA 0.40 TCGA-A6-6780-01 5 140731532 140731532 G A PCDHGB1 Missense_Mutation p.A569T 0.34 tolerated(0.42) probably_damaging(0.999) TCGA-A6-6780-01 5 140740588 140740589 - A PCDHGB2 Frame_Shift_Ins p.T298Nfs*9 0.25 TCGA-A6-6780-01 5 140741656 140741656 C T PCDHGB2 Missense_Mutation p.P652S 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-A6-6780-01 5 141019629 141019629 A G RELL2 Missense_Mutation p.M216V 0.31 tolerated(0.54) benign(0) TCGA-A6-6780-01 5 143543785 143543785 T C YIPF5 Missense_Mutation p.T107A 0.34 deleterious(0) possibly_damaging(0.579) TCGA-A6-6780-01 5 145609392 145609392 C T RBM27 Missense_Mutation p.R170W 0.38 deleterious(0) probably_damaging(0.953) TCGA-A6-6780-01 5 147695441 147695441 T - SPINK7 3'UTR 0.61 TCGA-A6-6780-01 5 149242756 149242756 G - PDE6A Frame_Shift_Del p.A811Gfs*10 0.26 TCGA-A6-6780-01 5 149681730 149681730 G A ARSI Silent p.I69I 0.35 TCGA-A6-6780-01 5 150947355 150947355 G A FAT2 Missense_Mutation p.R380C 0.29 possibly_damaging(0.836) TCGA-A6-6780-01 5 158158147 158158147 A T EBF1 Missense_Mutation p.I352N 0.31 deleterious(0) probably_damaging(0.997) TCGA-A6-6780-01 5 159520937 159520937 G A PWWP2A Silent p.P240P 0.39 TCGA-A6-6780-01 5 16681494 16681494 C T MYO10 Silent p.A1436A 0.39 TCGA-A6-6780-01 5 16699615 16699615 T C MYO10 Missense_Mutation p.D1167G 0.44 tolerated_low_confidence(0.07) probably_damaging(0.989) TCGA-A6-6780-01 5 167379600 167379600 G A TENM2 Silent p.P240P 0.33 TCGA-A6-6780-01 5 169064303 169064303 C T DOCK2 5'UTR 0.22 TCGA-A6-6780-01 5 170737213 170737213 C T TLX3 Missense_Mutation p.R161W 0.36 deleterious(0) benign(0.446) TCGA-A6-6780-01 5 171710670 171710670 G - UBTD2 5'UTR 0.23 TCGA-A6-6780-01 5 172660066 172660066 G A NKX2-5 Missense_Mutation p.R161W 0.36 deleterious(0) probably_damaging(0.981) TCGA-A6-6780-01 5 174151879 174151879 G A MSX2 Missense_Mutation p.G73R 0.27 tolerated(0.09) benign(0.398) TCGA-A6-6780-01 5 175386963 175386963 A G THOC3 3'UTR 0.17 TCGA-A6-6780-01 5 175717148 175717148 C A SIMC1 Intron 0.32 TCGA-A6-6780-01 5 176823743 176823743 C - SLC34A1 Frame_Shift_Del p.F397Sfs*16 0.28 TCGA-A6-6780-01 5 176911073 176911073 C T PDLIM7 Missense_Mutation p.R390Q 0.44 tolerated(0.16) benign(0.2) TCGA-A6-6780-01 5 176951592 176951592 T C FAM193B Silent p.S630S 0.33 TCGA-A6-6780-01 5 177310840 177310840 T C RP11-423H2.1 RNA 0.16 TCGA-A6-6780-01 5 178138942 178138942 C A ZNF354A 3'UTR 0.34 TCGA-A6-6780-01 5 178359118 178359118 A C ZFP2 Missense_Mutation p.K268N 0.36 deleterious(0) possibly_damaging(0.823) TCGA-A6-6780-01 5 178455119 178455119 G A ZNF879 Missense_Mutation p.A83T 0.34 tolerated(0.75) benign(0) TCGA-A6-6780-01 5 179193413 179193413 C T MAML1 Missense_Mutation p.P468S 0.37 tolerated(0.13) benign(0.003) TCGA-A6-6780-01 5 180052868 180052868 C T FLT4 Splice_Site p.X474_splice 0.24 TCGA-A6-6780-01 5 228334 228334 A G SDHA Missense_Mutation p.Y219C 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A6-6780-01 5 2749566 2749566 G A IRX2 Silent p.D195D 0.29 TCGA-A6-6780-01 5 31799702 31799702 T C PDZD2 Missense_Mutation p.V116A 0.31 deleterious(0) probably_damaging(0.996) TCGA-A6-6780-01 5 32089075 32089076 - A PDZD2 Frame_Shift_Ins p.V1845Rfs*6 0.34 TCGA-A6-6780-01 5 32406944 32406945 - T ZFR Frame_Shift_Ins p.Q323Tfs*12 0.23 TCGA-A6-6780-01 5 35965841 35965841 C T UGT3A1 Missense_Mutation p.A164T 0.40 tolerated(0.14) benign(0.088) TCGA-A6-6780-01 5 37064800 37064800 G A NIPBL Missense_Mutation p.A2741T 0.27 tolerated_low_confidence(0.41) benign(0.054) TCGA-A6-6780-01 5 37226442 37226442 G T C5orf42 Missense_Mutation p.P752H 0.05 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 5 43246088 43246088 A T NIM1K Missense_Mutation p.I71L 0.22 deleterious(0.01) benign(0.04) TCGA-A6-6780-01 5 50138027 50138027 T - PARP8 3'UTR 0.29 TCGA-A6-6780-01 5 53814311 53814311 C A SNX18 Missense_Mutation p.P177T 0.41 tolerated(0.16) benign(0.011) TCGA-A6-6780-01 5 57792048 57792049 - A GAPT 3'UTR 0.29 TCGA-A6-6780-01 5 66459552 66459552 C T MAST4 Silent p.S1515S 0.41 TCGA-A6-6780-01 5 67589609 67589610 - A PIK3R1 Frame_Shift_Ins p.S460Kfs*5 0.24 TCGA-A6-6780-01 5 68399970 68399976 TCTTTCT CTTTC SLC30A5 Intron 0.14 TCGA-A6-6780-01 5 75490798 75490801 CAGA - SV2C Frame_Shift_Del p.D213Kfs*9 0.49 TCGA-A6-6780-01 5 75505592 75505592 T C SV2C Missense_Mutation p.Y265H 0.24 deleterious(0.04) benign(0.257) TCGA-A6-6780-01 5 76029260 76029260 A G F2R Missense_Mutation p.M404V 0.37 tolerated(0.19) benign(0.002) TCGA-A6-6780-01 5 76722394 76722394 G A PDE8B 3'UTR 0.40 TCGA-A6-6780-01 5 79030323 79030323 G T CMYA5 Missense_Mutation p.G1912V 0.33 probably_damaging(0.998) TCGA-A6-6780-01 5 81548428 81548428 G A ATG10 Silent p.K167K 0.30 TCGA-A6-6780-01 5 90077104 90077104 C T GPR98 Intron 0.24 TCGA-A6-6780-01 5 92929388 92929388 T G NR2F1 Missense_Mutation p.L371R 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 5 93775828 93775828 T C KIAA0825 Splice_Site p.X786_splice 0.34 TCGA-A6-6780-01 5 93966351 93966351 C T ANKRD32 Missense_Mutation p.R112C 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 6 100054901 100054901 G A PRDM13 5'UTR 0.36 TCGA-A6-6780-01 6 10415342 10415342 G T TFAP2A 5'UTR 0.80 TCGA-A6-6780-01 6 105549087 105549087 A G BVES Silent p.H320H 0.23 TCGA-A6-6780-01 6 105736712 105736713 - T PREP Frame_Shift_Ins p.G459Rfs*58 0.21 TCGA-A6-6780-01 6 106992492 106992492 C T AIM1 Silent p.L1288L 0.35 TCGA-A6-6780-01 6 10731011 10731012 - A TMEM14C 3'UTR 0.48 TCGA-A6-6780-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.25 TCGA-A6-6780-01 6 107533326 107533326 G A PDSS2 Missense_Mutation p.A288V 0.26 deleterious(0) probably_damaging(0.984) TCGA-A6-6780-01 6 108533225 108533225 A T SNX3 3'UTR 0.50 TCGA-A6-6780-01 6 109850207 109850207 T C AK9 Intron 0.21 TCGA-A6-6780-01 6 110081503 110081503 T G FIG4 Silent p.A396A 0.32 TCGA-A6-6780-01 6 110301840 110301840 G A GPR6 3'UTR 0.42 TCGA-A6-6780-01 6 110422923 110422923 C A WASF1 Missense_Mutation p.G464C 0.06 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-A6-6780-01 6 110501682 110501682 A G CDC40 Missense_Mutation p.Y12C 0.28 deleterious(0.01) unknown(0) TCGA-A6-6780-01 6 111665187 111665187 A - REV3L Frame_Shift_Del p.L2495Sfs*37 0.21 TCGA-A6-6780-01 6 11185671 11185671 C T NEDD9 Silent p.V743V 0.34 TCGA-A6-6780-01 6 112462050 112462050 T C LAMA4 Missense_Mutation p.K963R 0.05 deleterious(0.01) probably_damaging(0.947) TCGA-A6-6780-01 6 112510338 112510338 G - LAMA4 Frame_Shift_Del p.P263Lfs*9 0.26 TCGA-A6-6780-01 6 116783516 116783516 C T FAM26F Missense_Mutation p.R142C 0.36 deleterious(0.01) possibly_damaging(0.648) TCGA-A6-6780-01 6 121563479 121563479 A G TBC1D32 Silent p.A675A 0.21 TCGA-A6-6780-01 6 122777658 122777658 A G SERINC1 Silent p.S113S 0.40 TCGA-A6-6780-01 6 1313181 1313181 C T FOXQ1 Missense_Mutation p.A81V 0.42 tolerated(0.06) benign(0) TCGA-A6-6780-01 6 131602740 131602740 G A AKAP7 Silent p.A307A 0.34 TCGA-A6-6780-01 6 131917748 131917748 A - MED23 Frame_Shift_Del p.F896Lfs*5 0.20 TCGA-A6-6780-01 6 133034986 133034986 C T VNN1 Silent p.A63A 0.31 TCGA-A6-6780-01 6 136590417 136590417 C T BCLAF1 Intron 0.47 TCGA-A6-6780-01 6 137519537 137519537 C T IFNGR1 Silent p.P367P 0.25 TCGA-A6-6780-01 6 139251213 139251213 C A REPS1 Missense_Mutation p.E386D 0.29 tolerated(0.31) benign(0.011) TCGA-A6-6780-01 6 139694087 139694087 A - CITED2 3'UTR 0.35 TCGA-A6-6780-01 6 139694105 139694105 T - CITED2 3'UTR 0.39 TCGA-A6-6780-01 6 14135398 14135398 T - CD83 Frame_Shift_Del p.L185Sfs*10 0.24 TCGA-A6-6780-01 6 143093055 143093055 G A HIVEP2 Missense_Mutation p.R941C 0.31 deleterious(0) probably_damaging(0.998) TCGA-A6-6780-01 6 144086414 144086414 A - PHACTR2 Frame_Shift_Del p.T240Qfs*47 0.30 TCGA-A6-6780-01 6 144508363 144508363 C T STX11 Missense_Mutation p.A200V 0.36 deleterious(0.01) probably_damaging(0.934) TCGA-A6-6780-01 6 147830348 147830348 G - SAMD5 Frame_Shift_Del p.E97Sfs*27 0.24 TCGA-A6-6780-01 6 151671430 151671430 T C AKAP12 Missense_Mutation p.L635P 0.29 tolerated(0.27) benign(0.013) TCGA-A6-6780-01 6 152555016 152555016 T - SYNE1 Frame_Shift_Del p.K6871Rfs*22 0.37 TCGA-A6-6780-01 6 153019117 153019117 T - MYCT1 Frame_Shift_Del p.F29Sfs*28 0.28 TCGA-A6-6780-01 6 153296201 153296201 A C FBXO5 Missense_Mutation p.L220R 0.23 deleterious(0) possibly_damaging(0.875) TCGA-A6-6780-01 6 154412196 154412196 C T OPRM1 Silent p.T344T 0.37 TCGA-A6-6780-01 6 154732092 154732092 T - CNKSR3 Frame_Shift_Del p.M419* 0.28 TCGA-A6-6780-01 6 157502182 157502182 G A ARID1B Nonsense_Mutation p.W1072* 0.21 TCGA-A6-6780-01 6 158923160 158923160 C - TULP4 Frame_Shift_Del p.Q824Rfs*5 0.26 TCGA-A6-6780-01 6 160511040 160511040 C T IGF2R Missense_Mutation p.A2187V 0.45 tolerated(0.13) benign(0.426) TCGA-A6-6780-01 6 161413056 161413056 G A MAP3K4 Silent p.P31P 0.39 TCGA-A6-6780-01 6 16328571 16328571 T C ATXN1 5'UTR 0.33 TCGA-A6-6780-01 6 163987695 163987695 T - QKI Intron 0.29 TCGA-A6-6780-01 6 163987933 163987933 T - QKI Intron 0.26 TCGA-A6-6780-01 6 165746400 165746400 G T PDE10A 3'UTR 0.23 TCGA-A6-6780-01 6 166912107 166912107 G A RPS6KA2 Silent p.H220H 0.41 TCGA-A6-6780-01 6 169632132 169632132 G A THBS2 Silent p.D698D 0.18 TCGA-A6-6780-01 6 17785748 17785748 G A KIF13A Silent p.D1162D 0.34 TCGA-A6-6780-01 6 22570181 22570181 G A HDGFL1 Missense_Mutation p.G126D 0.39 tolerated(0.26) benign(0.03) TCGA-A6-6780-01 6 24564436 24564436 G T KIAA0319 Missense_Mutation p.Q809K 0.80 tolerated(0.87) benign(0.098) TCGA-A6-6780-01 6 24601407 24601407 T - KIAA0319 5'UTR 0.35 TCGA-A6-6780-01 6 26217654 26217654 C T HIST1H2AE 3'UTR 0.74 TCGA-A6-6780-01 6 26234707 26234707 A G HIST1H1D Missense_Mutation p.I152T 0.21 tolerated(0.58) unknown(0) TCGA-A6-6780-01 6 26546351 26546351 A G HMGN4 3'UTR 0.68 TCGA-A6-6780-01 6 28227473 28227473 G A NKAPL Silent p.A108A 0.57 TCGA-A6-6780-01 6 30122108 30122108 C T TRIM10 Missense_Mutation p.G362R 0.38 tolerated(0.19) benign(0.021) TCGA-A6-6780-01 6 30521164 30521164 A - GNL1 Frame_Shift_Del p.P258Lfs*14 0.25 TCGA-A6-6780-01 6 31498039 31498039 A - DDX39B 3'UTR 0.38 TCGA-A6-6780-01 6 31675771 31675771 G A LY6G6F Missense_Mutation p.R169H 0.35 tolerated(0.6) benign(0.108) TCGA-A6-6780-01 6 31675844 31675844 G T LY6G6F Missense_Mutation p.R193S 0.37 deleterious(0.04) possibly_damaging(0.587) TCGA-A6-6780-01 6 31680261 31680261 G A LY6G6E Silent p.L79L 0.42 TCGA-A6-6780-01 6 31827487 31827487 T G NEU1 3'UTR 0.29 TCGA-A6-6780-01 6 31922175 31922175 T C NELFE Missense_Mutation p.T263A 0.33 deleterious(0.02) unknown(0) TCGA-A6-6780-01 6 32016386 32016386 C - TNXB 5'Flank 0.46 TCGA-A6-6780-01 6 32053672 32053672 C T TNXB Silent p.P1001P 0.77 TCGA-A6-6780-01 6 32169019 32169019 C A NOTCH4 Missense_Mutation p.M1338I 0.05 deleterious(0) benign(0.03) TCGA-A6-6780-01 6 32724274 32724274 C - HLA-DQB2 Intron 0.33 TCGA-A6-6780-01 6 32821121 32821121 G T TAP1 Missense_Mutation p.P158Q 0.27 deleterious(0.02) possibly_damaging(0.839) TCGA-A6-6780-01 6 33138669 33138669 C T COL11A2 Missense_Mutation p.R1045Q 0.74 benign(0.417) TCGA-A6-6780-01 6 33288984 33288984 G A DAXX Missense_Mutation p.R190C 0.46 deleterious(0.01) probably_damaging(0.985) TCGA-A6-6780-01 6 33411258 33411259 - C SYNGAP1 Frame_Shift_Ins p.F979Ifs*5 0.39 TCGA-A6-6780-01 6 33555320 33555320 G T GGNBP1 Intron 0.45 TCGA-A6-6780-01 6 33638299 33638299 C T ITPR3 Missense_Mutation p.P796L 0.31 deleterious(0.01) probably_damaging(0.953) TCGA-A6-6780-01 6 35543601 35543601 T C FKBP5 3'UTR 0.39 TCGA-A6-6780-01 6 40360164 40360164 C A LRFN2 Missense_Mutation p.G630W 0.33 deleterious(0.02) possibly_damaging(0.594) TCGA-A6-6780-01 6 4130796 4130796 T C ECI2 Splice_Site p.X105_splice 0.36 TCGA-A6-6780-01 6 41606333 41606333 G A MDFI 5'UTR 0.40 TCGA-A6-6780-01 6 43042441 43042441 C - KLC4 3'UTR 0.40 TCGA-A6-6780-01 6 43322894 43322894 C A ZNF318 Missense_Mutation p.E726D 0.34 benign(0.024) TCGA-A6-6780-01 6 43466768 43466768 C A TJAP1 Missense_Mutation p.P10H 0.07 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 6 44270904 44270904 T C AARS2 Silent p.P718P 0.37 TCGA-A6-6780-01 6 52270628 52270628 T C PAQR8 3'UTR 0.28 TCGA-A6-6780-01 6 56426936 56426936 C A DST Missense_Mutation p.G2067C 0.27 possibly_damaging(0.729) TCGA-A6-6780-01 6 56481453 56481453 T C DST Intron 0.77 TCGA-A6-6780-01 6 72596796 72596796 G A RIMS1 Missense_Mutation p.D24N 0.39 deleterious(0) probably_damaging(0.991) TCGA-A6-6780-01 6 72960771 72960771 A C RIMS1 Missense_Mutation p.E840D 0.37 deleterious(0.05) benign(0.039) TCGA-A6-6780-01 6 78172204 78172204 G A HTR1B Missense_Mutation p.A306V 0.30 deleterious(0) benign(0.349) TCGA-A6-6780-01 6 83921666 83921666 T C ME1 Missense_Mutation p.I566V 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-A6-6780-01 6 83947499 83947499 A C ME1 Silent p.G321G 0.25 TCGA-A6-6780-01 6 87965348 87965348 A G ZNF292 Silent p.P667P 0.26 TCGA-A6-6780-01 6 88126498 88126498 G A C6ORF165 Missense_Mutation p.R195H 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-A6-6780-01 6 88854551 88854551 C T CNR1 Missense_Mutation p.R148H 0.40 deleterious(0.01) probably_damaging(1) TCGA-A6-6780-01 6 90385231 90385231 C T MDN1 Missense_Mutation p.R4238Q 0.43 benign(0.026) TCGA-A6-6780-01 6 90417168 90417168 T - MDN1 Frame_Shift_Del p.K2642Nfs*17 0.28 TCGA-A6-6780-01 6 90576324 90576324 T C CASP8AP2 RNA 0.36 TCGA-A6-6780-01 6 91246134 91246134 A - MAP3K7 Intron 0.28 TCGA-A6-6780-01 6 99285816 99285816 T - POU3F2 3'UTR 0.25 TCGA-A6-6780-01 6 99323408 99323408 C T FBXL4 Missense_Mutation p.A529T 0.33 tolerated(0.05) benign(0.231) TCGA-A6-6780-01 6 99848575 99848575 G T PNISR Silent p.G753G 0.34 TCGA-A6-6780-01 7 100179774 100179774 G A LRCH4 Silent p.L128L 0.31 TCGA-A6-6780-01 7 100681867 100681867 A G MUC17 Silent p.S2390S 0.42 TCGA-A6-6780-01 7 102760527 102760527 C T NAPEPLD Silent p.T146T 0.45 TCGA-A6-6780-01 7 103244810 103244810 G A RELN Silent p.C1043C 0.35 TCGA-A6-6780-01 7 105195480 105195480 T C RINT1 Missense_Mutation p.Y493H 0.37 deleterious(0) probably_damaging(0.984) TCGA-A6-6780-01 7 106509677 106509677 G A PIK3CG Silent p.A557A 0.32 TCGA-A6-6780-01 7 11076130 11076130 A G PHF14 Missense_Mutation p.E563G 0.13 deleterious(0) probably_damaging(0.994) TCGA-A6-6780-01 7 11441433 11441433 T G THSD7A Missense_Mutation p.K1467T 0.24 deleterious(0) possibly_damaging(0.45) TCGA-A6-6780-01 7 116146187 116146187 C A CAV2 3'UTR 0.28 TCGA-A6-6780-01 7 117422981 117422981 T G CTTNBP2 Missense_Mutation p.Q769H 0.20 tolerated(0.14) benign(0.049) TCGA-A6-6780-01 7 119915499 119915499 G T KCND2 Silent p.L271L 0.41 TCGA-A6-6780-01 7 120765939 120765939 T C CPED1 Missense_Mutation p.V376A 0.24 deleterious(0) benign(0.166) TCGA-A6-6780-01 7 121943925 121943926 - G FEZF1 Frame_Shift_Ins p.L190Ffs*14 0.31 TCGA-A6-6780-01 7 122809344 122809344 C T SLC13A1 Nonsense_Mutation p.W137* 0.24 TCGA-A6-6780-01 7 123277013 123277013 G A ASB15 Missense_Mutation p.G582E 0.32 tolerated(0.07) benign(0.102) TCGA-A6-6780-01 7 12410039 12410039 C T VWDE Silent p.A631A 0.47 TCGA-A6-6780-01 7 131815320 131815320 A G PLXNA4 Missense_Mutation p.L1868P 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 7 133160226 133160229 AAGT - EXOC4 Splice_Site p.X443_splice 0.34 TCGA-A6-6780-01 7 135073526 135073526 C A CNOT4 Intron 0.05 TCGA-A6-6780-01 7 135333269 135333269 C T NUP205 Missense_Mutation p.R2002C 0.38 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 7 136700474 136700474 T - CHRM2 Frame_Shift_Del p.S288Qfs*9 0.23 TCGA-A6-6780-01 7 138279285 138279285 A - SVOPL 3'Flank 0.24 TCGA-A6-6780-01 7 139727149 139727149 G A PARP12 Missense_Mutation p.R519C 0.30 tolerated(0.08) benign(0.014) TCGA-A6-6780-01 7 141536932 141536932 C G PRSS37 Missense_Mutation p.V183L 0.29 deleterious(0.04) benign(0.009) TCGA-A6-6780-01 7 142626623 142626623 A G TRPV5 Silent p.N129N 0.26 TCGA-A6-6780-01 7 143141075 143141075 C A TAS2R60 Missense_Mutation p.P177H 0.48 tolerated(0.53) possibly_damaging(0.81) TCGA-A6-6780-01 7 143417214 143417215 - G FAM115C Frame_Shift_Ins p.L357Afs*26 0.30 TCGA-A6-6780-01 7 149171444 149171444 C T ZNF746 3'UTR 0.45 TCGA-A6-6780-01 7 149477168 149477168 G A SSPO RNA 0.31 TCGA-A6-6780-01 7 149486704 149486705 - C SSPO RNA 0.28 TCGA-A6-6780-01 7 150171340 150171340 C G GIMAP8 Missense_Mutation p.S308C 0.29 deleterious(0.01) probably_damaging(0.941) TCGA-A6-6780-01 7 150647306 150647306 G A KCNH2 Missense_Mutation p.S783F 0.44 deleterious(0) probably_damaging(0.996) TCGA-A6-6780-01 7 150768817 150768817 A G SLC4A2 Missense_Mutation p.M745V 0.31 tolerated(0.76) benign(0.001) TCGA-A6-6780-01 7 152346149 152346149 G A XRCC2 Missense_Mutation p.P141S 0.24 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 7 154747265 154747265 G A PAXIP1 Missense_Mutation p.P876S 0.32 tolerated(0.12) unknown(0) TCGA-A6-6780-01 7 155301673 155301673 G A CNPY1 Silent p.F20F 0.24 TCGA-A6-6780-01 7 155595776 155595776 C T SHH Missense_Mutation p.G403S 0.33 tolerated(0.81) benign(0.101) TCGA-A6-6780-01 7 19157064 19157064 A G TWIST1 5'UTR 0.40 TCGA-A6-6780-01 7 20824481 20824481 C T SP8 Missense_Mutation p.G319S 0.22 tolerated(0.3) benign(0.142) TCGA-A6-6780-01 7 22852669 22852669 G T TOMM7 3'UTR 0.36 TCGA-A6-6780-01 7 2406679 2406679 A C EIF3B Missense_Mutation p.K468Q 0.33 tolerated(0.21) benign(0.02) TCGA-A6-6780-01 7 26245989 26245989 A - CBX3 Frame_Shift_Del p.M11Wfs*26 0.22 TCGA-A6-6780-01 7 27185495 27185495 A G HOXA6 Missense_Mutation p.Y162H 0.32 deleterious(0) probably_damaging(0.992) TCGA-A6-6780-01 7 30008552 30008552 A G SCRN1 Silent p.A64A 0.11 TCGA-A6-6780-01 7 31126111 31126111 T C ADCYAP1R1 Silent p.P261P 0.42 TCGA-A6-6780-01 7 33014804 33014804 C - FKBP9 Frame_Shift_Del p.N129Ifs*10 0.27 TCGA-A6-6780-01 7 33945248 33945248 G A BMPER Missense_Mutation p.G8E 0.09 tolerated_low_confidence(0.42) benign(0) TCGA-A6-6780-01 7 35709864 35709864 A G HERPUD2 Silent p.N100N 0.30 TCGA-A6-6780-01 7 37052997 37052997 G A ELMO1 Silent p.H448H 0.38 TCGA-A6-6780-01 7 43594234 43594234 G A HECW1 Silent p.A1518A 0.30 TCGA-A6-6780-01 7 44044877 44044878 - G SPDYE1 Intron 0.21 TCGA-A6-6780-01 7 44178493 44178494 - C MYL7 3'UTR 0.28 TCGA-A6-6780-01 7 44259819 44259819 C T CAMK2B Missense_Mutation p.A615T 0.44 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-A6-6780-01 7 45004100 45004100 C A MYO1G Missense_Mutation p.A849S 0.47 tolerated(0.72) benign(0.357) TCGA-A6-6780-01 7 45141592 45141592 C T TBRG4 Missense_Mutation p.E467K 0.36 tolerated(0.23) benign(0.248) TCGA-A6-6780-01 7 47408566 47408566 C A TNS3 Missense_Mutation p.E559D 0.35 tolerated(0.13) benign(0.005) TCGA-A6-6780-01 7 47925439 47925439 T G PKD1L1 Missense_Mutation p.Y1017S 0.23 tolerated(0.08) benign(0.288) TCGA-A6-6780-01 7 4855972 4855972 G A RADIL Missense_Mutation p.A618V 0.23 tolerated(0.1) benign(0.005) TCGA-A6-6780-01 7 48563870 48563870 T C ABCA13 Missense_Mutation p.V4693A 0.30 benign(0.017) TCGA-A6-6780-01 7 53103860 53103860 G A POM121L12 Missense_Mutation p.A166T 0.41 tolerated(0.22) probably_damaging(0.913) TCGA-A6-6780-01 7 57528555 57528555 A - ZNF716 Frame_Shift_Del p.S131Vfs*2 0.26 TCGA-A6-6780-01 7 62752577 62752577 G T ZNF733P RNA 0.29 TCGA-A6-6780-01 7 63797263 63797263 A G ZNF736 Splice_Site p.X44_splice 0.33 TCGA-A6-6780-01 7 64388990 64388990 A C ZNF273 Missense_Mutation p.K428N 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-A6-6780-01 7 64466959 64466959 G A ERV3-1 5'UTR 0.28 TCGA-A6-6780-01 7 66240321 66240321 G A KCTD7 Missense_Mutation p.R96H 0.30 tolerated(0.12) possibly_damaging(0.773) TCGA-A6-6780-01 7 72040399 72040399 G A TYW1B 3'UTR 0.43 TCGA-A6-6780-01 7 73790956 73790956 A G CLIP2 Missense_Mutation p.Y742C 0.26 tolerated(0.24) benign(0.005) TCGA-A6-6780-01 7 810220 810220 G A HEATR2 Silent p.V632V 0.37 TCGA-A6-6780-01 7 82390038 82390038 T - PCLO Frame_Shift_Del p.T5069Qfs*20 0.09 TCGA-A6-6780-01 7 82582944 82582944 T - PCLO Frame_Shift_Del p.K2442Sfs*2 0.27 TCGA-A6-6780-01 7 83029508 83029508 G A SEMA3E Missense_Mutation p.A401V 0.43 tolerated(1) benign(0.025) TCGA-A6-6780-01 7 84629153 84629153 G A SEMA3D Missense_Mutation p.T646M 0.36 tolerated(0.18) probably_damaging(1) TCGA-A6-6780-01 7 88389148 88389148 C T ZNF804B 5'UTR 0.45 TCGA-A6-6780-01 7 91864132 91864132 T C KRIT1 Missense_Mutation p.T279A 0.26 tolerated(0.65) benign(0) TCGA-A6-6780-01 7 938783 938783 A G ADAP1 Missense_Mutation p.V328A 0.40 tolerated(0.13) possibly_damaging(0.567) TCGA-A6-6780-01 7 99818416 99818416 C - PVRIG Frame_Shift_Del p.Q212Rfs*112 0.26 TCGA-A6-6780-01 8 100568772 100568772 G T VPS13B Missense_Mutation p.A1639S 0.26 deleterious(0.02) benign(0.189) TCGA-A6-6780-01 8 100866138 100866138 C T VPS13B Silent p.Y3532Y 0.32 TCGA-A6-6780-01 8 103354846 103354846 C T UBR5 Missense_Mutation p.R318H 0.36 deleterious(0) probably_damaging(0.926) TCGA-A6-6780-01 8 10465860 10465860 C T RP1L1 Silent p.Q1916Q 0.35 TCGA-A6-6780-01 8 105264055 105264056 - A RIMS2 3'Flank 0.24 TCGA-A6-6780-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.23 TCGA-A6-6780-01 8 11301687 11301687 C T FAM167A Silent p.G78G 0.17 TCGA-A6-6780-01 8 113241054 113241054 G A CSMD3 Missense_Mutation p.A3632V 0.24 deleterious(0) possibly_damaging(0.828) TCGA-A6-6780-01 8 11407760 11407760 A - BLK Frame_Shift_Del p.T155Pfs*10 0.26 TCGA-A6-6780-01 8 122626930 122626930 G A HAS2 Nonsense_Mutation p.R360* 0.30 TCGA-A6-6780-01 8 124253601 124253601 G - C8orf76 5'UTR 0.34 TCGA-A6-6780-01 8 124453602 124453602 G A WDYHV1 Missense_Mutation p.A189T 0.29 tolerated(0.61) benign(0.004) TCGA-A6-6780-01 8 124749573 124749573 A G ANXA13 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-A6-6780-01 8 124789510 124789510 T C FAM91A1 Silent p.I105I 0.36 TCGA-A6-6780-01 8 12592878 12592878 C T LONRF1 Missense_Mutation p.G495R 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 8 12882926 12882926 T C KIAA1456 3'UTR 0.23 TCGA-A6-6780-01 8 12883966 12883967 - G KIAA1456 3'UTR 0.21 TCGA-A6-6780-01 8 12952633 12952633 G A DLC1 Nonsense_Mutation p.Q1097* 0.34 TCGA-A6-6780-01 8 133150176 133150176 G A KCNQ3 Silent p.A552A 0.24 TCGA-A6-6780-01 8 133836264 133836264 A - PHF20L1 Frame_Shift_Del p.V535* 0.33 TCGA-A6-6780-01 8 135490851 135490851 C A ZFAT Silent p.V1202V 0.41 TCGA-A6-6780-01 8 139629166 139629166 G T COL22A1 Silent p.P1287P 0.33 TCGA-A6-6780-01 8 142228448 142228448 C T SLC45A4 Missense_Mutation p.G380S 0.33 deleterious(0.01) probably_damaging(1) TCGA-A6-6780-01 8 143625781 143625781 G A BAI1 3'UTR 0.43 TCGA-A6-6780-01 8 144295150 144295150 C T GPIHBP1 Missense_Mutation p.A3V 0.36 tolerated(0.41) possibly_damaging(0.499) TCGA-A6-6780-01 8 144332129 144332129 G T ZFP41 Missense_Mutation p.R39M 0.42 tolerated(0.07) benign(0.436) TCGA-A6-6780-01 8 144810519 144810519 G A FAM83H Missense_Mutation p.A371V 0.49 deleterious(0.01) benign(0.026) TCGA-A6-6780-01 8 144812505 144812505 A C FAM83H Missense_Mutation p.L83R 0.30 tolerated(0.34) benign(0.187) TCGA-A6-6780-01 8 144885714 144885714 C T SCRIB Missense_Mutation p.D1148N 0.37 probably_damaging(0.992) TCGA-A6-6780-01 8 145107114 145107114 A G OPLAH Missense_Mutation p.M1140T 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-A6-6780-01 8 145535876 145535876 C - HSF1 Frame_Shift_Del p.P365Rfs*12 0.35 TCGA-A6-6780-01 8 145622424 145622424 G A CPSF1 Silent p.L864L 0.24 TCGA-A6-6780-01 8 145772668 145772668 C T ARHGAP39 Missense_Mutation p.R601Q 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-A6-6780-01 8 17088124 17088124 G - CNOT7 3'UTR 0.29 TCGA-A6-6780-01 8 17927311 17927311 T C ASAH1 Missense_Mutation p.D114G 0.38 deleterious(0) probably_damaging(0.967) TCGA-A6-6780-01 8 1954897 1954897 A G KBTBD11 3'UTR 0.32 TCGA-A6-6780-01 8 195942 195942 T G ZNF596 Missense_Mutation p.C365W 0.39 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 8 21551989 21551989 A G GFRA2 Missense_Mutation p.M420T 0.24 tolerated(0.05) benign(0.001) TCGA-A6-6780-01 8 21997474 21997474 A G REEP4 Splice_Site p.X101_splice 0.31 TCGA-A6-6780-01 8 22173837 22173837 G A PIWIL2 Missense_Mutation p.S763N 0.44 deleterious(0.02) probably_damaging(0.967) TCGA-A6-6780-01 8 22481537 22481537 C T BIN3 Missense_Mutation p.R169Q 0.36 tolerated(0.2) benign(0.013) TCGA-A6-6780-01 8 22864588 22864588 G A RHOBTB2 Missense_Mutation p.R299H 0.29 tolerated(0.43) benign(0.002) TCGA-A6-6780-01 8 22938880 22938880 C T RP11-875O11.2 RNA 0.21 TCGA-A6-6780-01 8 22972264 22972264 A G TNFRSF10C Silent p.P87P 0.11 TCGA-A6-6780-01 8 25240292 25240292 C T DOCK5 Missense_Mutation p.R1377W 0.06 deleterious(0) probably_damaging(0.991) TCGA-A6-6780-01 8 25257429 25257429 T - DOCK5 Frame_Shift_Del p.F1571Lfs*19 0.24 TCGA-A6-6780-01 8 30040746 30040746 G A DCTN6 3'UTR 0.37 TCGA-A6-6780-01 8 30701889 30701889 T C TEX15 Missense_Mutation p.K1549E 0.05 tolerated(0.26) benign(0) TCGA-A6-6780-01 8 40012044 40012044 G A C8orf4 3'UTR 0.33 TCGA-A6-6780-01 8 408541 408541 C A FBXO25 Missense_Mutation p.A278D 0.32 deleterious(0.01) possibly_damaging(0.506) TCGA-A6-6780-01 8 41399389 41399389 A G GINS4 Missense_Mutation p.I182M 0.17 deleterious(0) benign(0.299) TCGA-A6-6780-01 8 41583445 41583445 G A ANK1 Missense_Mutation p.A182V 0.29 deleterious(0) probably_damaging(0.961) TCGA-A6-6780-01 8 42038127 42038127 G A PLAT Silent p.H322H 0.39 TCGA-A6-6780-01 8 42587096 42587096 G A CHRNB3 Missense_Mutation p.G216S 0.24 tolerated(0.48) possibly_damaging(0.595) TCGA-A6-6780-01 8 48774651 48774651 C T PRKDC Missense_Mutation p.R1985H 0.43 benign(0.009) TCGA-A6-6780-01 8 59058939 59058939 C T FAM110B Silent p.A50A 0.36 TCGA-A6-6780-01 8 59728030 59728032 GGA - TOX In_Frame_Del p.P420del 0.32 TCGA-A6-6780-01 8 68123761 68123761 C T ARFGEF1 Silent p.A1592A 0.05 TCGA-A6-6780-01 8 72123392 72123392 T - EYA1 Frame_Shift_Del p.K566Sfs*73 0.23 TCGA-A6-6780-01 8 72756215 72756215 C T MSC Missense_Mutation p.A67T 0.47 tolerated(0.58) benign(0) TCGA-A6-6780-01 8 7340160 7340160 C T DEFB106B Missense_Mutation p.R55Q 0.13 tolerated_low_confidence(0.32) benign(0) TCGA-A6-6780-01 8 74888485 74888485 T G TMEM70 5'UTR 0.33 TCGA-A6-6780-01 8 95470620 95470620 A G RAD54B Silent p.L60L 0.36 TCGA-A6-6780-01 8 9623934 9623934 A G TNKS Missense_Mutation p.R1247G 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 8 99442031 99442031 A - KCNS2 3'UTR 0.23 TCGA-A6-6780-01 8 99468221 99468221 T - STK3 Frame_Shift_Del p.N470Ifs*2 0.23 TCGA-A6-6780-01 9 100328141 100328141 C - TMOD1 Frame_Shift_Del p.T212Pfs*9 0.28 TCGA-A6-6780-01 9 100616542 100616542 C T FOXE1 Missense_Mutation p.R116C 0.42 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 9 103111633 103111633 T - TEX10 Frame_Shift_Del p.R5Efs*10 0.23 TCGA-A6-6780-01 9 103338934 103338934 T - TMEFF1 3'UTR 0.27 TCGA-A6-6780-01 9 104309213 104309213 C T RNF20 Nonsense_Mutation p.R287* 0.28 TCGA-A6-6780-01 9 107546603 107546603 T C ABCA1 Missense_Mutation p.Y2260C 0.26 tolerated_low_confidence(0.4) benign(0.004) TCGA-A6-6780-01 9 108200697 108200697 C T SLC44A1 3'UTR 0.42 TCGA-A6-6780-01 9 109689213 109689213 A C ZNF462 Missense_Mutation p.N1007T 0.39 benign(0.164) TCGA-A6-6780-01 9 111668596 111668596 G A IKBKAP Nonsense_Mutation p.Q544* 0.30 TCGA-A6-6780-01 9 111882063 111882063 A G TMEM245 Missense_Mutation p.L44P 0.38 tolerated_low_confidence(0.06) benign(0.023) TCGA-A6-6780-01 9 113312221 113312221 T C SVEP1 Missense_Mutation p.N232S 0.34 probably_damaging(0.913) TCGA-A6-6780-01 9 115928423 115928423 G A FKBP15 Missense_Mutation p.R1199C 0.26 deleterious_low_confidence(0.05) benign(0.004) TCGA-A6-6780-01 9 116930071 116930071 G A COL27A1 Missense_Mutation p.R79Q 0.31 unknown(0) TCGA-A6-6780-01 9 118009 118009 G A FOXD4 Silent p.D37D 0.32 TCGA-A6-6780-01 9 118949595 118949595 C A PAPPA Missense_Mutation p.P193Q 0.28 deleterious(0) probably_damaging(0.988) TCGA-A6-6780-01 9 125004110 125004110 G A RBM18 3'UTR 0.06 TCGA-A6-6780-01 9 125616176 125616176 C T RC3H2 Intron 0.25 TCGA-A6-6780-01 9 127618524 127618524 C T WDR38 Silent p.G137G 0.28 TCGA-A6-6780-01 9 127715019 127715019 G A SCAI 3'Flank 0.42 TCGA-A6-6780-01 9 128099721 128099721 C T GAPVD1 Missense_Mutation p.R937W 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-6780-01 9 129453248 129453248 G A LMX1B Missense_Mutation p.D154N 0.35 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 9 129645731 129645731 T C ZBTB34 3'UTR 0.44 TCGA-A6-6780-01 9 130106571 130106571 C T GARNL3 Missense_Mutation p.R437W 0.37 deleterious(0) possibly_damaging(0.847) TCGA-A6-6780-01 9 130471809 130471809 G A C9orf117 Silent p.T90T 0.38 TCGA-A6-6780-01 9 130579494 130579495 AG - ENG Intron 0.30 TCGA-A6-6780-01 9 130699785 130699785 C A DPM2 Missense_Mutation p.Q7H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6780-01 9 130825801 130825801 C T NAIF1 Missense_Mutation p.R297H 0.33 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-A6-6780-01 9 130863660 130863660 A - SLC25A25 Frame_Shift_Del p.I156Ffs*11 0.24 TCGA-A6-6780-01 9 131353809 131353809 C T SPTAN1 Silent p.Y1020Y 0.44 TCGA-A6-6780-01 9 131483667 131483667 G A ZDHHC12 Silent p.V199V 0.38 TCGA-A6-6780-01 9 13168500 13168500 C G MPDZ Missense_Mutation p.G1040A 0.44 deleterious(0.01) probably_damaging(1) TCGA-A6-6780-01 9 132381903 132381903 C T C9orf50 Silent p.S204S 0.43 TCGA-A6-6780-01 9 132482934 132482934 C T PRRX2 Silent p.S169S 0.29 TCGA-A6-6780-01 9 132740885 132740885 C T FNBP1 Silent p.T68T 0.26 TCGA-A6-6780-01 9 133779267 133779267 C T FIBCD1 3'UTR 0.34 TCGA-A6-6780-01 9 133942376 133942376 T - LAMC3 Frame_Shift_Del p.F794Lfs*90 0.27 TCGA-A6-6780-01 9 134006209 134006209 G A NUP214 Missense_Mutation p.V217I 0.29 unknown(0) TCGA-A6-6780-01 9 134008519 134008519 T C NUP214 Missense_Mutation p.Y252H 0.24 unknown(0) TCGA-A6-6780-01 9 135940444 135940444 G A CEL Missense_Mutation p.V123I 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-A6-6780-01 9 136137513 136137513 C T ABO RNA 0.32 TCGA-A6-6780-01 9 136210911 136210911 C T MED22 Intron 0.28 TCGA-A6-6780-01 9 136910528 136910528 G A BRD3 Nonsense_Mutation p.R368* 0.48 TCGA-A6-6780-01 9 138011381 138011381 G A OLFM1 Missense_Mutation p.R254H 0.24 deleterious(0.03) probably_damaging(0.954) TCGA-A6-6780-01 9 138714245 138714245 A T CAMSAP1 Silent p.G754G 0.33 TCGA-A6-6780-01 9 139391732 139391732 C T NOTCH1 Silent p.V2153V 0.23 TCGA-A6-6780-01 9 139730325 139730325 C T RABL6 Intron 0.43 TCGA-A6-6780-01 9 139734981 139734981 G A RABL6 3'UTR 0.35 TCGA-A6-6780-01 9 139740716 139740716 G A C9orf172 Missense_Mutation p.R617Q 0.47 tolerated(0.17) benign(0.015) TCGA-A6-6780-01 9 139838456 139838456 A G FBXW5 Missense_Mutation p.L27P 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6780-01 9 140059825 140059825 C T GRIN1 Intron 0.29 TCGA-A6-6780-01 9 140243821 140243821 C A EXD3 Missense_Mutation p.A553S 0.47 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 9 140267461 140267462 - G EXD3 Frame_Shift_Ins p.S120Qfs*52 0.35 TCGA-A6-6780-01 9 140772540 140772540 G A CACNA1B Missense_Mutation p.R52H 0.14 deleterious(0) benign(0.202) TCGA-A6-6780-01 9 14842457 14842457 A G FREM1 Missense_Mutation p.L532P 0.30 deleterious(0) probably_damaging(0.95) TCGA-A6-6780-01 9 19346379 19346379 A G DENND4C Silent p.T1155T 0.35 TCGA-A6-6780-01 9 19786068 19786069 - T SLC24A2 Frame_Shift_Ins p.S266Kfs*33 0.21 TCGA-A6-6780-01 9 21206817 21206817 C A IFNA10 Nonsense_Mutation p.E94* 0.40 TCGA-A6-6780-01 9 33255870 33255870 T - BAG1 Frame_Shift_Del p.K314Rfs*6 0.24 TCGA-A6-6780-01 9 34556275 34556275 A T CNTFR Missense_Mutation p.L249H 0.43 deleterious(0) possibly_damaging(0.855) TCGA-A6-6780-01 9 35075292 35075292 A G FANCG Silent p.P488P 0.33 TCGA-A6-6780-01 9 35738562 35738562 G A GBA2 Missense_Mutation p.A672V 0.10 deleterious(0.03) probably_damaging(0.976) TCGA-A6-6780-01 9 35740588 35740588 G A GBA2 Missense_Mutation p.P355L 0.42 deleterious(0) probably_damaging(0.999) TCGA-A6-6780-01 9 36110026 36110026 G A RECK Missense_Mutation p.R613H 0.32 deleterious(0.04) benign(0.017) TCGA-A6-6780-01 9 37776404 37776404 T C TRMT10B Splice_Site p.X282_splice 0.34 TCGA-A6-6780-01 9 43625125 43625125 T - SPATA31A6 Frame_Shift_Del p.T1188Qfs*2 0.19 TCGA-A6-6780-01 9 43815966 43815966 G T CNTNAP3B Missense_Mutation p.K240N 0.18 deleterious(0.03) possibly_damaging(0.637) TCGA-A6-6780-01 9 4719246 4719246 C T AK3 Silent p.V111V 0.39 TCGA-A6-6780-01 9 4741081 4741081 C - AK3 Frame_Shift_Del p.A3Rfs*9 0.23 TCGA-A6-6780-01 9 5801292 5801292 T - ERMP1 Frame_Shift_Del p.T651Pfs*3 0.33 TCGA-A6-6780-01 9 5805631 5805631 T C ERMP1 Missense_Mutation p.H568R 0.04 tolerated(0.16) benign(0.001) TCGA-A6-6780-01 9 5920544 5920544 C A KIAA2026 Missense_Mutation p.G1818C 0.33 deleterious(0) possibly_damaging(0.678) TCGA-A6-6780-01 9 71842728 71842728 C T TJP2 Missense_Mutation p.R451C 0.25 deleterious(0) probably_damaging(0.95) TCGA-A6-6780-01 9 72338240 72338240 A G PTAR1 Splice_Site p.X316_splice 0.36 TCGA-A6-6780-01 9 74300077 74300077 T - TMEM2 3'UTR 0.71 TCGA-A6-6780-01 9 77563079 77563079 C A C9orf40 Missense_Mutation p.R157M 0.35 deleterious(0) probably_damaging(0.919) TCGA-A6-6780-01 9 79118894 79118894 A G GCNT1 3'UTR 0.38 TCGA-A6-6780-01 9 79244148 79244148 T C PRUNE2 Missense_Mutation p.I3037V 0.38 deleterious(0.01) probably_damaging(0.976) TCGA-A6-6780-01 9 79635768 79635768 G A FOXB2 Missense_Mutation p.A400T 0.33 tolerated_low_confidence(0.32) benign(0.048) TCGA-A6-6780-01 9 79862285 79862285 C A VPS13A Missense_Mutation p.L671I 0.04 tolerated(0.21) benign(0.326) TCGA-A6-6780-01 9 86590642 86590642 A G HNRNPK Intron 0.40 TCGA-A6-6780-01 9 94794636 94794636 T C SPTLC1 3'UTR 0.43 TCGA-A6-6780-01 9 95219613 95219614 AC - ASPN Frame_Shift_Del p.V367Ffs*20 0.35 TCGA-A6-6780-01 9 95228761 95228761 A G ASPN Silent p.N160N 0.37 TCGA-A6-6780-01 9 96422497 96422497 G A PHF2 Silent p.P451P 0.18 TCGA-A6-6780-01 9 98683572 98683572 A - ERCC6L2 Frame_Shift_Del p.R438Gfs*15 0.27 TCGA-A6-6780-01 9 99521056 99521056 T A ZNF510 3'UTR 0.30 TCGA-A6-6780-01 X 100808096 100808096 C T ARMCX1 Silent p.N61N 0.66 TCGA-A6-6780-01 X 101396726 101396726 T C TCEAL6 5'UTR 0.68 TCGA-A6-6780-01 X 105451438 105451438 C A MUM1L1 Silent p.G671G 0.60 TCGA-A6-6780-01 X 118109561 118109561 G A LONRF3 Splice_Site p.X273_splice 0.70 TCGA-A6-6780-01 X 118242431 118242431 A C KIAA1210 Missense_Mutation p.S261A 0.67 tolerated(0.16) benign(0.366) TCGA-A6-6780-01 X 119388226 119388226 C T ZBTB33 Missense_Mutation p.A319V 0.70 tolerated(0.4) benign(0.001) TCGA-A6-6780-01 X 12736504 12736504 G A FRMPD4 Missense_Mutation p.V1187M 0.69 tolerated_low_confidence(0.08) benign(0.079) TCGA-A6-6780-01 X 12736600 12736600 G A FRMPD4 Missense_Mutation p.D1219N 0.77 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-A6-6780-01 X 128788598 128788598 G A APLN Missense_Mutation p.R4W 0.65 tolerated_low_confidence(0.08) unknown(0) TCGA-A6-6780-01 X 132887943 132887943 C A GPC3 Nonsense_Mutation p.G200* 0.63 TCGA-A6-6780-01 X 135593565 135593565 A - HTATSF1 Frame_Shift_Del p.K555Nfs*38 0.41 TCGA-A6-6780-01 X 139586917 139586917 C T SOX3 Silent p.P103P 0.68 TCGA-A6-6780-01 X 140996328 140996328 A C MAGEC1 Missense_Mutation p.K1046N 0.74 deleterious(0.01) unknown(0) TCGA-A6-6780-01 X 142967774 142967774 C T UBE2NL 3'UTR 0.68 TCGA-A6-6780-01 X 152958551 152958551 G A SLC6A8 Missense_Mutation p.R278H 0.74 tolerated(0.07) benign(0.036) TCGA-A6-6780-01 X 153006173 153006173 G T ABCD1 Missense_Mutation p.G594C 0.44 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 X 153171545 153171545 C T AVPR2 Silent p.C195C 0.19 TCGA-A6-6780-01 X 153587633 153587633 A G FLNA Silent p.Y1428Y 0.71 TCGA-A6-6780-01 X 154157916 154157916 G T F8 Silent p.A1383A 0.57 TCGA-A6-6780-01 X 155005088 155005088 T C SPRY3 3'UTR 0.04 TCGA-A6-6780-01 X 155255058 155255058 C - WASH6P RNA 0.12 TCGA-A6-6780-01 X 24766430 24766430 T C POLA1 Silent p.D892D 0.61 TCGA-A6-6780-01 X 30327157 30327157 C T NR0B1 Silent p.S108S 0.77 TCGA-A6-6780-01 X 307451 307451 C T PPP2R3B Silent p.S259S 0.43 TCGA-A6-6780-01 X 32659643 32659643 A - DMD Intron 0.38 TCGA-A6-6780-01 X 39937110 39937110 C - BCOR Frame_Shift_Del p.A25Rfs*9 0.48 TCGA-A6-6780-01 X 46508206 46508206 C T SLC9A7 Silent p.A458A 0.65 TCGA-A6-6780-01 X 47101911 47101911 C T USP11 Missense_Mutation p.S536L 0.78 deleterious(0.01) benign(0.005) TCGA-A6-6780-01 X 53565948 53565948 G A HUWE1 Missense_Mutation p.A3909V 0.58 unknown(0) TCGA-A6-6780-01 X 54776520 54776520 G A ITIH6 Silent p.D1250D 0.68 TCGA-A6-6780-01 X 57618381 57618383 TTT - ZXDB 5'UTR 0.69 TCGA-A6-6780-01 X 62885810 62885810 G A ARHGEF9 Missense_Mutation p.R338W 0.67 deleterious(0) probably_damaging(1) TCGA-A6-6780-01 X 63412033 63412033 A G AMER1 Silent p.D378D 0.64 TCGA-A6-6780-01 X 77086342 77086342 G A MAGT1 Missense_Mutation p.L350F 0.70 deleterious(0) possibly_damaging(0.558) TCGA-A6-6780-01 X 8565122 8565122 G A KAL1 Missense_Mutation p.S165L 0.79 tolerated(0.1) benign(0.015) TCGA-A6-6780-01 X 9862897 9862897 C - SHROOM2 Frame_Shift_Del p.P318Lfs*143 0.36 TCGA-A6-6780-01 Y 16942020 16942020 G A NLGN4Y Missense_Mutation p.G408S 0.70 deleterious(0.02) probably_damaging(0.998) TCGA-A6-6781-01 10 100013356 100013356 G A LOXL4 Missense_Mutation p.R597C 0.14 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 10 102059361 102059361 G A PKD2L1 Missense_Mutation p.A155V 0.18 tolerated(0.25) benign(0.052) TCGA-A6-6781-01 10 102262124 102262124 G A SEC31B Nonsense_Mutation p.R433* 0.20 TCGA-A6-6781-01 10 102289578 102289578 C T NDUFB8 Missense_Mutation p.V11I 0.13 tolerated(0.61) benign(0.003) TCGA-A6-6781-01 10 102765434 102765434 C T LZTS2 Missense_Mutation p.R430W 0.16 deleterious(0.01) possibly_damaging(0.462) TCGA-A6-6781-01 10 102796293 102796293 C T SFXN3 Missense_Mutation p.A165V 0.20 deleterious(0) probably_damaging(0.973) TCGA-A6-6781-01 10 102891253 102891253 G A TLX1 5'UTR 0.17 TCGA-A6-6781-01 10 102893991 102893991 C T TLX1 Missense_Mutation p.R210C 0.23 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 10 103912283 103912283 G T NOLC1 Missense_Mutation p.G39V 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-6781-01 10 104414434 104414434 C T TRIM8 Missense_Mutation p.R199W 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 10 105215148 105215148 C T CALHM1 Silent p.T304T 0.25 TCGA-A6-6781-01 10 106075426 106075427 - C ITPRIP Frame_Shift_Ins p.A129Rfs*19 0.15 TCGA-A6-6781-01 10 111881956 111881956 C T ADD3 Missense_Mutation p.A350V 0.23 tolerated(0.21) benign(0.002) TCGA-A6-6781-01 10 112541584 112541584 C - RBM20 Frame_Shift_Del p.L408Sfs*17 0.21 TCGA-A6-6781-01 10 112839246 112839246 G A ADRA2A 3'UTR 0.15 TCGA-A6-6781-01 10 114799860 114799860 G A TCF7L2 Missense_Mutation p.R176Q 0.19 tolerated(0.11) probably_damaging(0.96) TCGA-A6-6781-01 10 1149662 1149662 G A WDR37 Missense_Mutation p.V283M 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-A6-6781-01 10 115805298 115805298 C T ADRB1 Silent p.P469P 0.30 TCGA-A6-6781-01 10 116417998 116417998 G T ABLIM1 5'UTR 0.22 TCGA-A6-6781-01 10 118031566 118031567 - C GFRA1 5'UTR 0.20 TCGA-A6-6781-01 10 118957017 118957017 C T KCNK18 Silent p.H6H 0.17 TCGA-A6-6781-01 10 120450782 120450782 A - CACUL1 Frame_Shift_Del p.F340Lfs*128 0.21 TCGA-A6-6781-01 10 121429561 121429561 G A BAG3 Missense_Mutation p.A127T 0.18 tolerated(0.25) possibly_damaging(0.831) TCGA-A6-6781-01 10 121558056 121558056 T C INPP5F Silent p.S350S 0.20 TCGA-A6-6781-01 10 123673353 123673353 T - ATE1 Frame_Shift_Del p.M97Cfs*2 0.20 TCGA-A6-6781-01 10 123845918 123845919 - G TACC2 Frame_Shift_Ins p.E1303Gfs*11 0.18 TCGA-A6-6781-01 10 124897037 124897037 G A HMX3 Silent p.A288A 0.28 TCGA-A6-6781-01 10 124908006 124908006 G A HMX2 Missense_Mutation p.V38I 0.10 tolerated_low_confidence(0.21) benign(0.006) TCGA-A6-6781-01 10 125528192 125528192 C A CPXM2 Silent p.V383V 0.23 TCGA-A6-6781-01 10 126150465 126150465 C T LHPP Missense_Mutation p.R12C 0.23 deleterious(0) probably_damaging(0.929) TCGA-A6-6781-01 10 126630969 126630969 C T ZRANB1 5'UTR 0.38 TCGA-A6-6781-01 10 12870810 12870810 C T CAMK1D Missense_Mutation p.S361L 0.20 deleterious_low_confidence(0.02) benign(0.064) TCGA-A6-6781-01 10 129901620 129901620 T C MKI67 Silent p.S2828S 0.26 TCGA-A6-6781-01 10 13344024 13344024 T - PHYH 5'Flank 0.11 TCGA-A6-6781-01 10 134162540 134162540 C T LRRC27 Intron 0.22 TCGA-A6-6781-01 10 134218324 134218324 C T PWWP2B Missense_Mutation p.P107L 0.22 tolerated(0.09) possibly_damaging(0.746) TCGA-A6-6781-01 10 134218861 134218861 C T PWWP2B Missense_Mutation p.P286L 0.22 tolerated(0.86) benign(0.001) TCGA-A6-6781-01 10 134622038 134622038 A G TTC40 Missense_Mutation p.W2679R 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.781) TCGA-A6-6781-01 10 134647554 134647554 C A TTC40 Nonsense_Mutation p.G2314* 0.29 TCGA-A6-6781-01 10 135020554 135020554 A - KNDC1 Intron 0.21 TCGA-A6-6781-01 10 135165854 135165854 C T PRAP1 Silent p.G122G 0.24 TCGA-A6-6781-01 10 135207747 135207747 T G MTG1 Missense_Mutation p.L8R 0.25 tolerated(0.06) benign(0.015) TCGA-A6-6781-01 10 16982150 16982150 C T CUBN Missense_Mutation p.R1810Q 0.16 deleterious(0.04) possibly_damaging(0.595) TCGA-A6-6781-01 10 18276557 18276557 G A SLC39A12 Missense_Mutation p.A416T 0.14 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 10 23220964 23220965 - A ARMC3 Frame_Shift_Ins p.D15Gfs*4 0.21 TCGA-A6-6781-01 10 25887748 25887748 C T GPR158 Missense_Mutation p.R1065C 0.20 deleterious(0.01) benign(0.001) TCGA-A6-6781-01 10 26432508 26432508 G A MYO3A Silent p.K798K 0.21 TCGA-A6-6781-01 10 28149667 28149667 G A ARMC4 Missense_Mutation p.R970C 0.25 deleterious(0.05) probably_damaging(0.932) TCGA-A6-6781-01 10 286882 286882 G A ZMYND11 Missense_Mutation p.R268H 0.19 deleterious(0.01) possibly_damaging(0.88) TCGA-A6-6781-01 10 31610328 31610328 A G ZEB1 Intron 0.24 TCGA-A6-6781-01 10 3197870 3197870 C T PITRM1 Missense_Mutation p.E512K 0.25 tolerated(0.14) benign(0.15) TCGA-A6-6781-01 10 32322862 32322862 C T KIF5B Missense_Mutation p.A406T 0.25 tolerated(0.72) benign(0.001) TCGA-A6-6781-01 10 32594712 32594712 T C EPC1 Missense_Mutation p.I101V 0.16 deleterious(0.04) possibly_damaging(0.807) TCGA-A6-6781-01 10 34400165 34400166 - G PARD3 Frame_Shift_Ins p.S1335Lfs*15 0.15 TCGA-A6-6781-01 10 34558810 34558810 C T PARD3 Missense_Mutation p.R1068Q 0.11 tolerated(0.46) probably_damaging(0.992) TCGA-A6-6781-01 10 35928804 35928804 G A FZD8 Silent p.D518D 0.24 TCGA-A6-6781-01 10 373115 373115 G A DIP2C Missense_Mutation p.A1252V 0.18 tolerated(0.13) possibly_damaging(0.611) TCGA-A6-6781-01 10 415507 415507 C T DIP2C Silent p.G686G 0.19 TCGA-A6-6781-01 10 43292533 43292534 - A BMS1 Frame_Shift_Ins p.L617Afs*20 0.20 TCGA-A6-6781-01 10 43623705 43623705 G A RET Silent p.T1111T 0.21 TCGA-A6-6781-01 10 45954652 45954652 C T MARCH8 Missense_Mutation p.V163I 0.24 tolerated(0.54) benign(0.007) TCGA-A6-6781-01 10 46246256 46246256 G A FAM21C Missense_Mutation p.A301T 0.31 tolerated(0.44) benign(0.001) TCGA-A6-6781-01 10 48372682 48372682 G A ZNF488 3'UTR 0.24 TCGA-A6-6781-01 10 50081622 50081622 G - WDFY4 Frame_Shift_Del p.E2278Kfs*20 0.20 TCGA-A6-6781-01 10 50944085 50944085 G A OGDHL Missense_Mutation p.R965C 0.56 deleterious(0.03) benign(0.339) TCGA-A6-6781-01 10 52610433 52610433 G A A1CF Silent p.L39L 0.11 TCGA-A6-6781-01 10 55663062 55663062 A T PCDH15 Missense_Mutation p.F1148I 0.18 tolerated(0.13) benign(0.005) TCGA-A6-6781-01 10 61718433 61718433 T - C10orf40 5'UTR 0.26 TCGA-A6-6781-01 10 63852532 63852532 C T ARID5B Nonsense_Mutation p.Q1104* 0.26 TCGA-A6-6781-01 10 64567221 64567221 G A ADO 3'UTR 0.11 TCGA-A6-6781-01 10 64968295 64968295 T A JMJD1C Missense_Mutation p.E1045V 0.17 tolerated(0.07) possibly_damaging(0.609) TCGA-A6-6781-01 10 67680207 67680208 - T CTNNA3 Frame_Shift_Ins p.P857Tfs*4 0.20 TCGA-A6-6781-01 10 70136677 70136677 A T RUFY2 Missense_Mutation p.Y455N 0.22 tolerated(0.18) benign(0.016) TCGA-A6-6781-01 10 70531104 70531104 A - CCAR1 Frame_Shift_Del p.E816Kfs*75 0.19 TCGA-A6-6781-01 10 70742540 70742540 G A DDX21 Missense_Mutation p.R775Q 0.21 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-A6-6781-01 10 71008460 71008460 G A HKDC1 Missense_Mutation p.V516I 0.32 tolerated(0.07) benign(0.404) TCGA-A6-6781-01 10 71391541 71391541 C T C10orf35 Silent p.D14D 0.24 TCGA-A6-6781-01 10 71682548 71682548 A G COL13A1 Missense_Mutation p.K399E 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-A6-6781-01 10 71871443 71871443 C T H2AFY2 3'UTR 0.26 TCGA-A6-6781-01 10 72015310 72015310 G A NPFFR1 Silent p.I232I 0.21 TCGA-A6-6781-01 10 72289816 72289816 G A PALD1 Missense_Mutation p.G154R 0.26 deleterious(0.01) possibly_damaging(0.9) TCGA-A6-6781-01 10 72541716 72541716 C A TBATA Nonsense_Mutation p.E40* 0.21 TCGA-A6-6781-01 10 73472629 73472629 G A C10orf105 3'UTR 0.25 TCGA-A6-6781-01 10 73537994 73537994 C T C10orf54 5'Flank 0.11 TCGA-A6-6781-01 10 73572530 73572530 T - CDH23 Frame_Shift_Del p.F933Lfs*43 0.30 TCGA-A6-6781-01 10 73579481 73579481 A T PSAP Silent p.P394P 0.25 TCGA-A6-6781-01 10 73579570 73579570 C T PSAP Missense_Mutation p.G365S 0.24 tolerated(0.07) possibly_damaging(0.775) TCGA-A6-6781-01 10 73970504 73970504 G - ASCC1 Frame_Shift_Del p.S67Afs*9 0.23 TCGA-A6-6781-01 10 74884078 74884078 G A NUDT13 Silent p.T155T 0.18 TCGA-A6-6781-01 10 74928045 74928045 C T FAM149B1 5'UTR 0.35 TCGA-A6-6781-01 10 74995037 74995037 C T FAM149B1 Silent p.P521P 0.26 TCGA-A6-6781-01 10 75561270 75561270 C - ZSWIM8 Frame_Shift_Del p.*1843Efs*25 0.19 TCGA-A6-6781-01 10 75562318 75562318 G A NDST2 Missense_Mutation p.T848M 0.19 tolerated(0.08) benign(0.022) TCGA-A6-6781-01 10 76936123 76936123 T C SAMD8 Intron 0.25 TCGA-A6-6781-01 10 7838094 7838094 C T ATP5C1 Nonsense_Mutation p.R23* 0.24 TCGA-A6-6781-01 10 81146068 81146068 G - ZCCHC24 3'UTR 0.21 TCGA-A6-6781-01 10 82276053 82276053 G A TSPAN14 Missense_Mutation p.V239I 0.32 tolerated(0.54) benign(0.016) TCGA-A6-6781-01 10 88769596 88769596 G A RP11-96C23.10 RNA 0.19 TCGA-A6-6781-01 10 93773527 93773527 G C BTAF1 Missense_Mutation p.S1472T 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-A6-6781-01 10 94669190 94669190 T G EXOC6 Nonsense_Mutation p.Y155* 0.05 TCGA-A6-6781-01 10 95658417 95658417 A - SLC35G1 Frame_Shift_Del p.V92Cfs*7 0.19 TCGA-A6-6781-01 10 95660658 95660658 C T SLC35G1 Missense_Mutation p.T170M 0.23 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 10 95720510 95720510 C T PIPSL RNA 0.27 TCGA-A6-6781-01 10 95720605 95720605 G A PIPSL RNA 0.27 TCGA-A6-6781-01 10 96014738 96014738 C T PLCE1 Silent p.A1162A 0.23 TCGA-A6-6781-01 10 97917912 97917912 C T ZNF518A RNA 0.31 TCGA-A6-6781-01 10 97918760 97918760 C T ZNF518A RNA 0.25 TCGA-A6-6781-01 10 97923449 97923449 A - ZNF518A RNA 0.19 TCGA-A6-6781-01 10 98469430 98469430 G A PIK3AP1 Silent p.S108S 0.31 TCGA-A6-6781-01 10 98770829 98770829 T C SLIT1 Missense_Mutation p.R1088G 0.15 tolerated(0.37) benign(0) TCGA-A6-6781-01 10 99025643 99025643 C T ARHGAP19 Missense_Mutation p.R99Q 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-A6-6781-01 11 10013982 10013982 A T SBF2 Missense_Mutation p.S426T 0.21 tolerated(0.34) benign(0.001) TCGA-A6-6781-01 11 100920699 100920699 C A PGR Nonsense_Mutation p.E817* 0.19 TCGA-A6-6781-01 11 101359765 101359765 C T TRPC6 Missense_Mutation p.R399Q 0.21 tolerated(0.1) probably_damaging(0.984) TCGA-A6-6781-01 11 1025311 1025311 G A MUC6 Silent p.H952H 0.15 TCGA-A6-6781-01 11 105850472 105850472 A - GRIA4 3'UTR 0.17 TCGA-A6-6781-01 11 107299559 107299560 - T CWF19L2 Frame_Shift_Ins p.E467Rfs*17 0.27 TCGA-A6-6781-01 11 108138041 108138041 C T ATM Silent p.N870N 0.19 TCGA-A6-6781-01 11 108151825 108151825 A - ATM Frame_Shift_Del p.K1170Nfs*11 0.18 TCGA-A6-6781-01 11 108206648 108206648 C T ATM Missense_Mutation p.T2743M 0.21 deleterious(0.01) possibly_damaging(0.846) TCGA-A6-6781-01 11 108380931 108380931 C G EXPH5 Missense_Mutation p.S1768T 0.19 tolerated(0.65) benign(0.001) TCGA-A6-6781-01 11 113103536 113103536 G T NCAM1 Missense_Mutation p.D557Y 0.30 deleterious(0) probably_damaging(0.99) TCGA-A6-6781-01 11 11454225 11454225 G A GALNT18 Missense_Mutation p.R180C 0.20 deleterious(0) probably_damaging(0.991) TCGA-A6-6781-01 11 116661297 116661297 G A APOA5 Silent p.H216H 0.33 TCGA-A6-6781-01 11 116661407 116661407 C T APOA5 Missense_Mutation p.V180M 0.14 deleterious(0) probably_damaging(0.956) TCGA-A6-6781-01 11 117266333 117266333 A C CEP164 Missense_Mutation p.Q995P 0.17 deleterious(0.01) possibly_damaging(0.731) TCGA-A6-6781-01 11 117301482 117301482 C T DSCAML1 Missense_Mutation p.R1941Q 0.29 deleterious(0) possibly_damaging(0.883) TCGA-A6-6781-01 11 117307953 117307953 C G DSCAML1 Missense_Mutation p.E1595D 0.16 tolerated(0.42) benign(0.002) TCGA-A6-6781-01 11 117391967 117391967 C T DSCAML1 Missense_Mutation p.R424H 0.16 tolerated(0.23) possibly_damaging(0.541) TCGA-A6-6781-01 11 117395604 117395604 G A DSCAML1 Missense_Mutation p.R345W 0.15 deleterious(0) probably_damaging(0.992) TCGA-A6-6781-01 11 118014720 118014720 G A SCN4B Silent p.D97D 0.24 TCGA-A6-6781-01 11 118376882 118376882 G A KMT2A Silent p.A3425A 0.14 TCGA-A6-6781-01 11 118427698 118427698 A G IFT46 Silent p.D87D 0.10 TCGA-A6-6781-01 11 118650341 118650341 C T DDX6 Silent p.Q123Q 0.21 TCGA-A6-6781-01 11 118849898 118849898 C T FOXR1 Missense_Mutation p.S123F 0.14 tolerated(0.07) benign(0.338) TCGA-A6-6781-01 11 119243717 119243717 G A USP2 Silent p.S158S 0.20 TCGA-A6-6781-01 11 120169090 120169090 C T POU2F3 Silent p.S85S 0.17 TCGA-A6-6781-01 11 123601255 123601255 G A ZNF202 Silent p.G114G 0.14 TCGA-A6-6781-01 11 123810726 123810726 A G OR4D5 Missense_Mutation p.I135V 0.23 tolerated(0.3) benign(0.002) TCGA-A6-6781-01 11 124266762 124266762 G A OR8B3 Silent p.C162C 0.23 TCGA-A6-6781-01 11 124496499 124496499 G - TBRG1 Frame_Shift_Del p.E197Rfs*29 0.11 TCGA-A6-6781-01 11 12495373 12495373 C T PARVA Missense_Mutation p.T113M 0.22 tolerated(0.22) possibly_damaging(0.738) TCGA-A6-6781-01 11 1250446 1250446 C T MUC5B Silent p.P341P 0.26 TCGA-A6-6781-01 11 12540054 12540054 G A PARVA Silent p.P384P 0.24 TCGA-A6-6781-01 11 125867120 125867120 C T CDON Missense_Mutation p.V782I 0.32 tolerated(0.14) possibly_damaging(0.789) TCGA-A6-6781-01 11 126134904 126134904 T C SRPR Missense_Mutation p.K492R 0.31 tolerated(0.13) benign(0.107) TCGA-A6-6781-01 11 126147384 126147384 G A FOXRED1 Missense_Mutation p.V421M 0.21 deleterious(0) possibly_damaging(0.763) TCGA-A6-6781-01 11 1262732 1262732 G A MUC5B Missense_Mutation p.C1541Y 0.16 unknown(0) TCGA-A6-6781-01 11 126310437 126310437 G - KIRREL3 Frame_Shift_Del p.I421Sfs*63 0.17 TCGA-A6-6781-01 11 1267190 1267190 G A MUC5B Missense_Mutation p.S3027N 0.18 unknown(0) TCGA-A6-6781-01 11 130058550 130058550 G A ST14 Missense_Mutation p.A123T 0.24 tolerated(0.67) benign(0.053) TCGA-A6-6781-01 11 130281313 130281313 G A ADAMTS8 Silent p.D583D 0.36 TCGA-A6-6781-01 11 130284611 130284611 G A ADAMTS8 Missense_Mutation p.R461C 0.26 deleterious(0) probably_damaging(0.939) TCGA-A6-6781-01 11 14280848 14280848 C T RP11-21L19.1 3'Flank 0.23 TCGA-A6-6781-01 11 1467001 1467001 C T BRSK2 Missense_Mutation p.R410C 0.20 deleterious(0) probably_damaging(0.979) TCGA-A6-6781-01 11 16010675 16010675 G A SOX6 Missense_Mutation p.R592C 0.25 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 11 1605953 1605953 C - KRTAP5-1 Frame_Shift_Del p.G176Afs*? 0.20 TCGA-A6-6781-01 11 1606264 1606264 A C KRTAP5-1 Silent p.S72S 0.20 TCGA-A6-6781-01 11 17547962 17547963 - G USH1C Frame_Shift_Ins p.G203Wfs*47 0.25 TCGA-A6-6781-01 11 17615202 17615202 C T OTOG Nonsense_Mutation p.R1075* 0.24 TCGA-A6-6781-01 11 1775313 1775313 C T CTSD Missense_Mutation p.D295N 0.40 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 11 18631335 18631335 G A SPTY2D1 3'UTR 0.26 TCGA-A6-6781-01 11 18955772 18955772 A - MRGPRX1 Frame_Shift_Del p.L187Yfs*13 0.14 TCGA-A6-6781-01 11 1955618 1955620 GAA - TNNT3 In_Frame_Del p.K145del 0.18 TCGA-A6-6781-01 11 19854036 19854036 A G NAV2 Missense_Mutation p.T92A 0.29 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 11 20005785 20005785 C T NAV2 Silent p.D943D 0.33 TCGA-A6-6781-01 11 20057558 20057558 T C NAV2 Missense_Mutation p.L964P 0.13 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 11 22271796 22271797 - A ANO5 Frame_Shift_Ins p.I300Nfs*36 0.22 TCGA-A6-6781-01 11 26718783 26718783 A G SLC5A12 Missense_Mutation p.V323A 0.17 deleterious(0.03) possibly_damaging(0.737) TCGA-A6-6781-01 11 27681170 27681171 - TC BDNF Intron 0.15 TCGA-A6-6781-01 11 28090850 28090850 C T KIF18A Missense_Mutation p.E516K 0.25 deleterious(0.05) benign(0.027) TCGA-A6-6781-01 11 28112989 28112989 T - KIF18A Frame_Shift_Del p.V187Wfs*35 0.21 TCGA-A6-6781-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.32 TCGA-A6-6781-01 11 32410610 32410610 C T WT1 Silent p.A516A 0.17 TCGA-A6-6781-01 11 33569390 33569390 C T KIAA1549L Missense_Mutation p.R859W 0.24 deleterious(0) probably_damaging(0.983) TCGA-A6-6781-01 11 36596837 36596837 G A RAG1 Missense_Mutation p.M661I 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.785) TCGA-A6-6781-01 11 3681407 3681407 G A ART1 Missense_Mutation p.G220S 0.27 tolerated(0.91) benign(0.002) TCGA-A6-6781-01 11 3681477 3681478 - C ART1 Frame_Shift_Ins p.F246Lfs*2 0.25 TCGA-A6-6781-01 11 3690541 3690541 G A CHRNA10 Missense_Mutation p.R83W 0.16 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 11 3774634 3774634 A - NUP98 Frame_Shift_Del p.F393Lfs*77 0.16 TCGA-A6-6781-01 11 406439 406439 C T SIGIRR Missense_Mutation p.D327N 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 11 428140 428140 G A ANO9 Nonsense_Mutation p.Q428* 0.14 TCGA-A6-6781-01 11 45671393 45671393 G A CHST1 Missense_Mutation p.R361C 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 11 46389605 46389605 G A DGKZ Silent p.T328T 0.19 TCGA-A6-6781-01 11 46740826 46740826 C - F2 Frame_Shift_Del p.L15Wfs*106 0.15 TCGA-A6-6781-01 11 46898815 46898815 T A LRP4 Missense_Mutation p.D1071V 0.17 deleterious(0) benign(0.396) TCGA-A6-6781-01 11 4703554 4703554 G A OR51E2 Missense_Mutation p.R130C 0.12 deleterious(0) possibly_damaging(0.77) TCGA-A6-6781-01 11 47744543 47744543 T - FNBP4 Frame_Shift_Del p.G931Efs*17 0.25 TCGA-A6-6781-01 11 49208297 49208297 C T FOLH1 Missense_Mutation p.A180T 0.19 deleterious(0) possibly_damaging(0.899) TCGA-A6-6781-01 11 4967550 4967550 C T OR51A4 Missense_Mutation p.V261I 0.13 tolerated(0.45) benign(0.004) TCGA-A6-6781-01 11 499857 499857 C A RNH1 Missense_Mutation p.D139Y 0.14 deleterious(0.01) possibly_damaging(0.872) TCGA-A6-6781-01 11 533499 533499 C T HRAS Missense_Mutation p.R135Q 0.24 tolerated(0.17) benign(0.065) TCGA-A6-6781-01 11 5474814 5474814 C T OR51I2 Silent p.C32C 0.35 TCGA-A6-6781-01 11 57118260 57118260 G A P2RX3 Missense_Mutation p.G244S 0.24 tolerated(0.45) benign(0.166) TCGA-A6-6781-01 11 57155289 57155289 G A PRG2 Missense_Mutation p.A183V 0.28 deleterious(0.02) probably_damaging(0.913) TCGA-A6-6781-01 11 57564286 57564286 C T CTNND1 Nonsense_Mutation p.Q260* 0.26 TCGA-A6-6781-01 11 58206977 58206977 G A OR5B12 Silent p.Y216Y 0.18 TCGA-A6-6781-01 11 58956718 58956718 G A DTX4 Missense_Mutation p.V361I 0.33 tolerated(0.14) benign(0.1) TCGA-A6-6781-01 11 5905811 5905811 G - OR52E4 Frame_Shift_Del p.G98Dfs*39 0.16 TCGA-A6-6781-01 11 59811120 59811120 G T OOSP2 Missense_Mutation p.R81S 0.34 tolerated(0.08) benign(0.005) TCGA-A6-6781-01 11 60670284 60670284 C T PRPF19 Missense_Mutation p.A106T 0.21 tolerated(0.07) possibly_damaging(0.595) TCGA-A6-6781-01 11 60776196 60776196 C T CD6 Silent p.R220R 0.17 TCGA-A6-6781-01 11 60899536 60899536 G A VPS37C Missense_Mutation p.T275I 0.27 deleterious(0.02) benign(0.013) TCGA-A6-6781-01 11 61017268 61017268 G A PGA5 Missense_Mutation p.E301K 0.31 tolerated(0.57) benign(0.001) TCGA-A6-6781-01 11 61081929 61081929 A C DDB1 Silent p.S480S 0.23 TCGA-A6-6781-01 11 61105551 61105551 C T DAK Missense_Mutation p.R48W 0.32 deleterious(0) possibly_damaging(0.893) TCGA-A6-6781-01 11 61110130 61110130 G A DAK Missense_Mutation p.G259S 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-A6-6781-01 11 61277615 61277615 A G LRRC10B 3'UTR 0.26 TCGA-A6-6781-01 11 61624932 61624932 C T FADS2 Missense_Mutation p.P271L 0.26 tolerated(0.18) benign(0.031) TCGA-A6-6781-01 11 61897888 61897888 C T INCENP Missense_Mutation p.R297C 0.30 deleterious(0.01) unknown(0) TCGA-A6-6781-01 11 619357 619357 C T CDHR5 Missense_Mutation p.A443T 0.25 deleterious(0.04) benign(0.013) TCGA-A6-6781-01 11 620334 620334 C T CDHR5 Missense_Mutation p.R281H 0.21 deleterious(0.05) probably_damaging(0.984) TCGA-A6-6781-01 11 62287822 62287822 G A AHNAK Silent p.D4689D 0.24 TCGA-A6-6781-01 11 6231692 6231692 A G C11orf42 Missense_Mutation p.N229D 0.20 tolerated(0.6) benign(0.008) TCGA-A6-6781-01 11 62343556 62343556 A - TUT1 Frame_Shift_Del p.F583Lfs*3 0.21 TCGA-A6-6781-01 11 62378942 62378942 G - EML3 Frame_Shift_Del p.P50Lfs*32 0.19 TCGA-A6-6781-01 11 62407174 62407174 A - GANAB Frame_Shift_Del p.L23* 0.17 TCGA-A6-6781-01 11 62462165 62462165 G A BSCL2 Missense_Mutation p.P169S 0.25 tolerated(0.05) possibly_damaging(0.827) TCGA-A6-6781-01 11 62656110 62656110 G A SLC3A2 Missense_Mutation p.R614H 0.28 tolerated(0.44) benign(0) TCGA-A6-6781-01 11 62902151 62902151 G A SLC22A24 Silent p.G164G 0.21 TCGA-A6-6781-01 11 6292725 6292725 G A CCKBR Silent p.S432S 0.35 TCGA-A6-6781-01 11 63141238 63141238 C T SLC22A9 Missense_Mutation p.A210V 0.09 tolerated(1) benign(0.006) TCGA-A6-6781-01 11 63177309 63177309 C T SLC22A9 Missense_Mutation p.P546L 0.20 tolerated(0.19) benign(0.02) TCGA-A6-6781-01 11 6340320 6340320 G A PRKCDBP 3'UTR 0.19 TCGA-A6-6781-01 11 63742265 63742265 T C AP000721.4 Missense_Mutation p.M38T 0.31 deleterious_low_confidence(0.05) benign(0.068) TCGA-A6-6781-01 11 63987446 63987446 A G FERMT3 Missense_Mutation p.D392G 0.19 deleterious(0.02) benign(0.009) TCGA-A6-6781-01 11 63997473 63997473 C T NUDT22 3'UTR 0.21 TCGA-A6-6781-01 11 64084187 64084187 A - TRMT112 3'UTR 0.15 TCGA-A6-6781-01 11 64121207 64121207 G A CCDC88B Missense_Mutation p.R1285H 0.19 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 11 64567805 64567805 G A MAP4K2 Missense_Mutation p.P262L 0.27 deleterious(0) possibly_damaging(0.54) TCGA-A6-6781-01 11 64606526 64606526 G A CDC42BPG Silent p.Y285Y 0.28 TCGA-A6-6781-01 11 64668012 64668012 C - ATG2A Frame_Shift_Del p.G1473Afs*14 0.25 TCGA-A6-6781-01 11 6470135 6470135 G A TRIM3 3'UTR 0.31 TCGA-A6-6781-01 11 65000763 65000763 C T SLC22A20 RNA 0.22 TCGA-A6-6781-01 11 65088214 65088214 G A CDC42EP2 5'UTR 0.27 TCGA-A6-6781-01 11 65349656 65349657 GA - EHBP1L1 Frame_Shift_Del p.E507Gfs*12 0.18 TCGA-A6-6781-01 11 65357275 65357276 CT - EHBP1L1 Frame_Shift_Del p.Q1331Tfs*52 0.17 TCGA-A6-6781-01 11 65361059 65361059 G A KCNK7 Silent p.A202A 0.28 TCGA-A6-6781-01 11 65365955 65365955 G A MAP3K11 Missense_Mutation p.A784V 0.21 tolerated_low_confidence(0.08) benign(0.046) TCGA-A6-6781-01 11 65416780 65416780 G - SIPA1 Frame_Shift_Del p.A787Pfs*12 0.23 TCGA-A6-6781-01 11 65426186 65426186 T C RELA Intron 0.33 TCGA-A6-6781-01 11 6554987 6554987 G A DNHD1 Missense_Mutation p.R861H 0.21 probably_damaging(0.961) TCGA-A6-6781-01 11 65632544 65632544 C T MUS81 Silent p.A443A 0.16 TCGA-A6-6781-01 11 65633554 65633554 G A MUS81 3'UTR 0.28 TCGA-A6-6781-01 11 65637623 65637623 G A EFEMP2 Silent p.F192F 0.28 TCGA-A6-6781-01 11 65835754 65835754 G T SF3B2 Nonsense_Mutation p.E856* 0.31 TCGA-A6-6781-01 11 66203567 66203567 G C MRPL11 Missense_Mutation p.L164V 0.29 deleterious(0.05) benign(0.013) TCGA-A6-6781-01 11 66240758 66240758 C T PELI3 Missense_Mutation p.T168M 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6781-01 11 66334935 66334935 T C CTSF Missense_Mutation p.N171D 0.23 tolerated(0.19) benign(0.009) TCGA-A6-6781-01 11 66411421 66411421 G A RBM14-RBM4 Missense_Mutation p.G280R 0.25 tolerated(0.14) unknown(0) TCGA-A6-6781-01 11 66625911 66625911 C T LRFN4 Silent p.S232S 0.23 TCGA-A6-6781-01 11 66639562 66639562 G - PC Frame_Shift_Del p.A24Lfs*41 0.13 TCGA-A6-6781-01 11 66802240 66802240 G A SYT12 Silent p.P53P 0.12 TCGA-A6-6781-01 11 67021715 67021715 C T KDM2A Missense_Mutation p.R1045W 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-A6-6781-01 11 67052411 67052411 T C ADRBK1 Missense_Mutation p.L583P 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 11 67191800 67191800 G T CARNS1 Missense_Mutation p.G861C 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 11 67205890 67205890 C T CORO1B Missense_Mutation p.R476H 0.10 tolerated(0.15) possibly_damaging(0.848) TCGA-A6-6781-01 11 67223665 67223665 G A CABP4 Missense_Mutation p.E125K 0.26 deleterious(0.01) benign(0.088) TCGA-A6-6781-01 11 67265405 67265405 T G PITPNM1 Missense_Mutation p.S589R 0.22 deleterious(0) benign(0.024) TCGA-A6-6781-01 11 67925654 67925655 AG - SUV420H1 Frame_Shift_Del p.L720Sfs*2 0.17 TCGA-A6-6781-01 11 67926106 67926106 C T SUV420H1 Silent p.T569T 0.19 TCGA-A6-6781-01 11 67926613 67926613 G A SUV420H1 Silent p.G400G 0.19 TCGA-A6-6781-01 11 68029610 68029610 C T C11orf24 Missense_Mutation p.A285T 0.21 tolerated(1) benign(0.003) TCGA-A6-6781-01 11 68031265 68031265 C T C11orf24 5'UTR 0.53 TCGA-A6-6781-01 11 6817050 6817050 G A OR6A2 5'UTR 0.13 TCGA-A6-6781-01 11 68181191 68181191 G A LRP5 Silent p.P846P 0.27 TCGA-A6-6781-01 11 68192619 68192619 G A LRP5 Missense_Mutation p.A1096T 0.37 deleterious(0.01) benign(0.041) TCGA-A6-6781-01 11 68326147 68326147 C T PPP6R3 Missense_Mutation p.T282I 0.31 deleterious(0.01) benign(0.01) TCGA-A6-6781-01 11 69466051 69466051 G T CCND1 3'UTR 0.06 TCGA-A6-6781-01 11 70332565 70332565 G A SHANK2 Missense_Mutation p.T1279M 0.35 tolerated(0.14) possibly_damaging(0.791) TCGA-A6-6781-01 11 70653144 70653144 G A SHANK2 Silent p.D543D 0.23 TCGA-A6-6781-01 11 70653194 70653194 C T SHANK2 Missense_Mutation p.V527M 0.22 deleterious(0) probably_damaging(0.985) TCGA-A6-6781-01 11 71941250 71941250 G A INPPL1 Missense_Mutation p.R342Q 0.10 deleterious(0.04) benign(0.123) TCGA-A6-6781-01 11 74336498 74336498 A - POLD3 Frame_Shift_Del p.I262* 0.21 TCGA-A6-6781-01 11 75316859 75316859 G A MAP6 Missense_Mutation p.A437V 0.30 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 11 75902622 75902622 G A WNT11 Silent p.H292H 0.21 TCGA-A6-6781-01 11 76183643 76183643 C T C11orf30 Silent p.F289F 0.24 TCGA-A6-6781-01 11 76831955 76831955 G A CAPN5 Missense_Mutation p.R496Q 0.22 tolerated(0.08) benign(0.008) TCGA-A6-6781-01 11 7712601 7712601 G - OVCH2 Frame_Shift_Del p.P513Lfs*3 0.18 TCGA-A6-6781-01 11 7722946 7722946 T C OVCH2 Silent p.L212L 0.18 TCGA-A6-6781-01 11 77932744 77932744 G A GAB2 Silent p.S580S 0.20 TCGA-A6-6781-01 11 802748 802748 C T PIDD Missense_Mutation p.A285T 0.22 tolerated(0.39) benign(0.053) TCGA-A6-6781-01 11 8122137 8122137 C T TUB Missense_Mutation p.R457C 0.12 deleterious(0.03) possibly_damaging(0.886) TCGA-A6-6781-01 11 8123075 8123075 T C TUB Missense_Mutation p.V532A 0.20 tolerated(0.16) possibly_damaging(0.854) TCGA-A6-6781-01 11 88027673 88027673 C T CTSC Missense_Mutation p.C298Y 0.33 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 11 88386487 88386487 G T GRM5 Silent p.P332P 0.25 TCGA-A6-6781-01 11 88911367 88911367 C T TYR Silent p.S82S 0.16 TCGA-A6-6781-01 11 8985893 8985893 C - TMEM9B 5'UTR 0.18 TCGA-A6-6781-01 11 92087267 92087267 C - FAT3 Frame_Shift_Del p.M665Cfs*42 0.17 TCGA-A6-6781-01 11 92577148 92577148 G A FAT3 Missense_Mutation p.V3539M 0.22 possibly_damaging(0.824) TCGA-A6-6781-01 11 92600238 92600238 C T FAT3 Missense_Mutation p.P3997L 0.28 probably_damaging(0.999) TCGA-A6-6781-01 11 94278912 94278912 C T FUT4 3'UTR 0.18 TCGA-A6-6781-01 11 94353309 94353309 C T PIWIL4 Missense_Mutation p.P814L 0.17 deleterious(0.01) benign(0.173) TCGA-A6-6781-01 11 94533087 94533087 C T AMOTL1 Missense_Mutation p.A244V 0.19 tolerated(0.77) probably_damaging(0.994) TCGA-A6-6781-01 11 9537831 9537831 C T ZNF143 Silent p.P536P 0.23 TCGA-A6-6781-01 11 95578211 95578211 G A MTMR2 Missense_Mutation p.A431V 0.23 deleterious(0) possibly_damaging(0.892) TCGA-A6-6781-01 11 96117759 96117759 A G CCDC82 Silent p.S51S 0.19 TCGA-A6-6781-01 12 10223805 10223805 G A CLEC1A 3'UTR 0.20 TCGA-A6-6781-01 12 105417968 105417968 C T ALDH1L2 3'UTR 0.25 TCGA-A6-6781-01 12 105538180 105538180 T - KIAA1033 Frame_Shift_Del p.F711Sfs*3 0.14 TCGA-A6-6781-01 12 107155159 107155159 C T RFX4 Missense_Mutation p.T716M 0.30 tolerated_low_confidence(0.07) benign(0.316) TCGA-A6-6781-01 12 108051480 108051480 A G BTBD11 Silent p.K1100K 0.25 TCGA-A6-6781-01 12 108169145 108169145 G A ASCL4 Silent p.A51A 0.20 TCGA-A6-6781-01 12 109671600 109671600 C - ACACB Frame_Shift_Del p.L1398Sfs*26 0.15 TCGA-A6-6781-01 12 109927742 109927742 C T UBE3B Missense_Mutation p.A188V 0.34 tolerated(0.23) benign(0.006) TCGA-A6-6781-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.24 TCGA-A6-6781-01 12 110029061 110029061 G A MVK Missense_Mutation p.A262T 0.26 tolerated(0.57) benign(0.001) TCGA-A6-6781-01 12 110928087 110928087 T C FAM216A 3'UTR 0.19 TCGA-A6-6781-01 12 112600860 112600861 GG - HECTD4 Frame_Shift_Del p.P4223Rfs*44 0.34 TCGA-A6-6781-01 12 113314485 113314485 C T RPH3A Nonsense_Mutation p.R329* 0.24 TCGA-A6-6781-01 12 113543563 113543563 G A RASAL1 Missense_Mutation p.L597F 0.16 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 12 113592331 113592331 G A CCDC42B Missense_Mutation p.R194Q 0.15 tolerated(0.23) benign(0.005) TCGA-A6-6781-01 12 113595395 113595395 G - DDX54 3'UTR 0.23 TCGA-A6-6781-01 12 113614728 113614728 C T DDX54 Silent p.T223T 0.17 TCGA-A6-6781-01 12 113812803 113812803 G A PLBD2 Missense_Mutation p.G284S 0.19 tolerated(1) benign(0.009) TCGA-A6-6781-01 12 113873143 113873143 C T SDSL Silent p.H151H 0.19 TCGA-A6-6781-01 12 116418640 116418640 C T MED13L Missense_Mutation p.R1760Q 0.25 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 12 118462787 118462787 C T RFC5 Missense_Mutation p.R185C 0.19 deleterious(0) possibly_damaging(0.761) TCGA-A6-6781-01 12 118639156 118639157 - T TAOK3 Frame_Shift_Ins p.I311Nfs*13 0.20 TCGA-A6-6781-01 12 120569816 120569816 C T GCN1L1 Missense_Mutation p.R2443H 0.22 probably_damaging(0.973) TCGA-A6-6781-01 12 121622625 121622625 C T P2RX7 3'UTR 0.09 TCGA-A6-6781-01 12 122018740 122018740 T - KDM2B Frame_Shift_Del p.K26Rfs*81 0.22 TCGA-A6-6781-01 12 122674828 122674828 G A LRRC43 Missense_Mutation p.D272N 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 12 122717364 122717364 G A VPS33A Missense_Mutation p.T531I 0.23 tolerated(0.49) benign(0.003) TCGA-A6-6781-01 12 122745823 122745823 T C VPS33A Silent p.S156S 0.21 TCGA-A6-6781-01 12 123252056 123252056 A - DENR Frame_Shift_Del p.K108Rfs*10 0.17 TCGA-A6-6781-01 12 123333143 123333143 C T HIP1R Silent p.D96D 0.21 TCGA-A6-6781-01 12 123351799 123351799 G A VPS37B Missense_Mutation p.P241L 0.27 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 12 123473294 123473294 C T PITPNM2 Missense_Mutation p.V953M 0.28 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 12 123813301 123813301 C T SBNO1 Missense_Mutation p.G426S 0.15 deleterious(0.02) possibly_damaging(0.54) TCGA-A6-6781-01 12 123950525 123950525 A - SNRNP35 Frame_Shift_Del p.K153Rfs*6 0.21 TCGA-A6-6781-01 12 124387564 124387564 C T DNAH10 Missense_Mutation p.A3122V 0.24 benign(0.056) TCGA-A6-6781-01 12 124416342 124416342 G A DNAH10 Missense_Mutation p.R4241H 0.24 probably_damaging(0.918) TCGA-A6-6781-01 12 124835221 124835221 C T NCOR2 Silent p.P1252P 0.24 TCGA-A6-6781-01 12 125834236 125834236 C - TMEM132B Frame_Shift_Del p.Q99Rfs*5 0.20 TCGA-A6-6781-01 12 130648109 130648109 G A FZD10 Missense_Mutation p.A208T 0.18 deleterious(0.03) probably_damaging(0.993) TCGA-A6-6781-01 12 130847342 130847342 G T PIWIL1 Nonsense_Mutation p.G668* 0.15 TCGA-A6-6781-01 12 130847612 130847612 C T PIWIL1 Silent p.D706D 0.23 TCGA-A6-6781-01 12 131488755 131488755 C A GPR133 Missense_Mutation p.P390H 0.25 deleterious(0) probably_damaging(0.954) TCGA-A6-6781-01 12 132445689 132445689 G A EP400 Silent p.V175V 0.12 TCGA-A6-6781-01 12 132471157 132471157 C T EP400 Silent p.S676S 0.25 TCGA-A6-6781-01 12 132589057 132589057 G A EP400NL Intron 0.06 TCGA-A6-6781-01 12 133219495 133219495 G A POLE Missense_Mutation p.P1547S 0.27 tolerated(0.06) probably_damaging(0.979) TCGA-A6-6781-01 12 133272573 133272573 C T PXMP2 Missense_Mutation p.R114C 0.21 deleterious(0) probably_damaging(0.984) TCGA-A6-6781-01 12 133372785 133372785 G A GOLGA3 Nonsense_Mutation p.R708* 0.23 TCGA-A6-6781-01 12 133438122 133438122 C T CHFR Missense_Mutation p.A240T 0.12 tolerated(0.37) benign(0.003) TCGA-A6-6781-01 12 15734688 15734688 G T PTPRO Nonsense_Mutation p.E1070* 0.16 TCGA-A6-6781-01 12 18234315 18234315 A G RERGL Missense_Mutation p.L143P 0.25 deleterious(0.01) possibly_damaging(0.633) TCGA-A6-6781-01 12 20783023 20783023 A G PDE3A Silent p.L574L 0.19 TCGA-A6-6781-01 12 21796992 21796992 G A LDHB Missense_Mutation p.R100C 0.22 tolerated(0.11) benign(0.01) TCGA-A6-6781-01 12 21926336 21926336 G A KCNJ8 Missense_Mutation p.T72M 0.19 tolerated(0.43) probably_damaging(0.998) TCGA-A6-6781-01 12 22838023 22838026 CAAT - ETNK1 3'UTR 0.22 TCGA-A6-6781-01 12 26276609 26276609 G T BHLHE41 Silent p.T100T 0.20 TCGA-A6-6781-01 12 26553157 26553157 C T ITPR2 Silent p.T2478T 0.20 TCGA-A6-6781-01 12 2936309 2936309 G A NRIP2 3'UTR 0.38 TCGA-A6-6781-01 12 29630042 29630042 A G OVCH1 Missense_Mutation p.I457T 0.26 tolerated(0.15) benign(0.003) TCGA-A6-6781-01 12 302539 302539 C T SLC6A12 Silent p.A478A 0.18 TCGA-A6-6781-01 12 305946 305946 A G SLC6A12 Missense_Mutation p.L393P 0.15 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 12 30884313 30884313 T - CAPRIN2 Frame_Shift_Del p.T342Hfs*15 0.14 TCGA-A6-6781-01 12 31586169 31586169 G A DENND5B Missense_Mutation p.R676W 0.22 deleterious(0) probably_damaging(0.915) TCGA-A6-6781-01 12 3393765 3393765 C T TSPAN9 3'UTR 0.24 TCGA-A6-6781-01 12 34179307 34179308 - T ALG10 Frame_Shift_Ins p.S296Ffs*15 0.19 TCGA-A6-6781-01 12 39760184 39760184 C T KIF21A Missense_Mutation p.A291T 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 12 416953 416953 T - KDM5A Frame_Shift_Del p.G1200Dfs*9 0.27 TCGA-A6-6781-01 12 44124184 44124184 C T PUS7L Missense_Mutation p.V701I 0.16 tolerated(0.46) benign(0.004) TCGA-A6-6781-01 12 48238719 48238719 G A VDR Missense_Mutation p.T415M 0.23 deleterious(0) possibly_damaging(0.888) TCGA-A6-6781-01 12 48240573 48240573 G T VDR Missense_Mutation p.D308E 0.23 deleterious(0.03) probably_damaging(0.967) TCGA-A6-6781-01 12 4854630 4854630 G A GALNT8 Missense_Mutation p.R299H 0.23 tolerated(0.27) benign(0.021) TCGA-A6-6781-01 12 48920151 48920151 C T OR8S1 Missense_Mutation p.T246I 0.31 tolerated(0.4) benign(0.05) TCGA-A6-6781-01 12 49170330 49170330 G A ADCY6 Silent p.R472R 0.29 TCGA-A6-6781-01 12 49231814 49231814 C T DDX23 Missense_Mutation p.R177Q 0.18 deleterious(0) possibly_damaging(0.559) TCGA-A6-6781-01 12 49426906 49426908 TGC - KMT2D In_Frame_Del p.Q3863del 0.29 TCGA-A6-6781-01 12 49445673 49445673 C T KMT2D Missense_Mutation p.R598H 0.25 unknown(0) TCGA-A6-6781-01 12 49484941 49484941 G A DHH Missense_Mutation p.R179C 0.25 deleterious(0) possibly_damaging(0.853) TCGA-A6-6781-01 12 49743129 49743129 C T DNAJC22 Silent p.A158A 0.10 TCGA-A6-6781-01 12 49993992 49993992 C A FAM186B Missense_Mutation p.E477D 0.20 tolerated(0.6) benign(0.146) TCGA-A6-6781-01 12 50030585 50030585 C T PRPF40B Missense_Mutation p.R505W 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-A6-6781-01 12 50191098 50191098 G T NCKAP5L Missense_Mutation p.P182Q 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 12 5020467 5020467 C - KCNA1 5'UTR 0.21 TCGA-A6-6781-01 12 5021260 5021260 G A KCNA1 Missense_Mutation p.R239H 0.23 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 12 50410473 50410473 C T RACGAP1 Missense_Mutation p.R9Q 0.32 tolerated(0.4) benign(0.002) TCGA-A6-6781-01 12 50615992 50615992 C T LIMA1 Missense_Mutation p.G148S 0.27 tolerated(1) benign(0.001) TCGA-A6-6781-01 12 5153948 5153948 G A KCNA5 Missense_Mutation p.R212H 0.12 deleterious(0.01) possibly_damaging(0.703) TCGA-A6-6781-01 12 51771006 51771006 T C GALNT6 Missense_Mutation p.I213V 0.15 tolerated(0.12) benign(0.136) TCGA-A6-6781-01 12 51845991 51845991 G A SLC4A8 Missense_Mutation p.D121N 0.07 deleterious(0.05) probably_damaging(0.997) TCGA-A6-6781-01 12 52644369 52644369 G A KRT7 3'Flank 0.25 TCGA-A6-6781-01 12 52681868 52681868 C T KRT81 Missense_Mutation p.R267Q 0.32 deleterious(0.01) possibly_damaging(0.864) TCGA-A6-6781-01 12 52695731 52695731 G A KRT86 Missense_Mutation p.A11T 0.18 tolerated(0.62) benign(0.002) TCGA-A6-6781-01 12 52699893 52699893 C T KRT86 Missense_Mutation p.A359V 0.15 tolerated(0.09) benign(0.022) TCGA-A6-6781-01 12 52799985 52799985 C T KRT82 Missense_Mutation p.R26Q 0.27 tolerated(0.34) benign(0.007) TCGA-A6-6781-01 12 52908906 52908906 G A KRT5 Silent p.S531S 0.28 TCGA-A6-6781-01 12 53040561 53040561 C T KRT2 Missense_Mutation p.A478T 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-A6-6781-01 12 53216887 53216887 C T KRT79 Missense_Mutation p.R427H 0.33 deleterious(0.01) possibly_damaging(0.807) TCGA-A6-6781-01 12 53453504 53453504 C T TENC1 Silent p.C703C 0.29 TCGA-A6-6781-01 12 53670510 53670510 C T ESPL1 Missense_Mutation p.R603C 0.16 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 12 55367342 55367342 C T TESPA1 Intron 0.22 TCGA-A6-6781-01 12 56221883 56221883 G A DNAJC14 Missense_Mutation p.S187F 0.16 deleterious(0.01) benign(0.33) TCGA-A6-6781-01 12 56558313 56558313 A G SMARCC2 Silent p.P1114P 0.20 TCGA-A6-6781-01 12 56743484 56743484 G A STAT2 Intron 0.32 TCGA-A6-6781-01 12 56992562 56992562 G A BAZ2A Missense_Mutation p.T1853I 0.27 tolerated(0.05) possibly_damaging(0.72) TCGA-A6-6781-01 12 57466641 57466641 C T TMEM194A Missense_Mutation p.R61H 0.24 tolerated(0.39) benign(0) TCGA-A6-6781-01 12 57578156 57578156 C A LRP1 Missense_Mutation p.S2036Y 0.29 probably_damaging(0.983) TCGA-A6-6781-01 12 57974871 57974871 C T KIF5A Missense_Mutation p.R891C 0.19 deleterious(0) possibly_damaging(0.791) TCGA-A6-6781-01 12 58142249 58142249 C T CDK4 3'UTR 0.25 TCGA-A6-6781-01 12 58201157 58201157 C T AVIL Missense_Mutation p.R483H 0.11 deleterious(0.02) benign(0.064) TCGA-A6-6781-01 12 64536198 64536198 C A SRGAP1 Missense_Mutation p.P1002T 0.19 tolerated_low_confidence(0.44) benign(0.013) TCGA-A6-6781-01 12 6457044 6457045 - C SCNN1A Frame_Shift_Ins p.P728Afs*62 0.20 TCGA-A6-6781-01 12 6458342 6458342 C T SCNN1A Silent p.S554S 0.25 TCGA-A6-6781-01 12 65113803 65113803 C T GNS Missense_Mutation p.G527R 0.14 tolerated_low_confidence(1) benign(0.003) TCGA-A6-6781-01 12 6562809 6562809 C T TAPBPL Silent p.V164V 0.22 TCGA-A6-6781-01 12 6619819 6619819 T C NCAPD2 Missense_Mutation p.L96P 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6781-01 12 6649746 6649746 G A IFFO1 Missense_Mutation p.P532L 0.06 deleterious(0) probably_damaging(0.974) TCGA-A6-6781-01 12 66531907 66531907 C T TMBIM4 Missense_Mutation p.A184T 0.20 tolerated(0.07) possibly_damaging(0.57) TCGA-A6-6781-01 12 66773080 66773080 C T GRIP1 Nonsense_Mutation p.W815* 0.32 TCGA-A6-6781-01 12 6709724 6709724 G A CHD4 Nonsense_Mutation p.R347* 0.21 TCGA-A6-6781-01 12 6761930 6761930 C T ING4 Missense_Mutation p.R133Q 0.15 deleterious(0.05) benign(0.285) TCGA-A6-6781-01 12 69656334 69656334 C T CPSF6 Missense_Mutation p.R551C 0.27 deleterious_low_confidence(0) unknown(0) TCGA-A6-6781-01 12 71139698 71139698 C T PTPRR Missense_Mutation p.V303M 0.05 tolerated(0.13) benign(0.25) TCGA-A6-6781-01 12 71526596 71526596 G A TSPAN8 Silent p.C151C 0.21 TCGA-A6-6781-01 12 72091298 72091298 G T TMEM19 Missense_Mutation p.W207C 0.17 deleterious(0.01) probably_damaging(0.971) TCGA-A6-6781-01 12 75902208 75902208 G A KRR1 Missense_Mutation p.T35M 0.20 deleterious(0.02) possibly_damaging(0.775) TCGA-A6-6781-01 12 76749558 76749558 T - OSBPL8 3'UTR 0.19 TCGA-A6-6781-01 12 7805269 7805269 T - APOBEC1 Frame_Shift_Del p.K69Nfs*12 0.21 TCGA-A6-6781-01 12 78513267 78513267 A - NAV3 Frame_Shift_Del p.K1098Nfs*81 0.19 TCGA-A6-6781-01 12 80201042 80201042 T - PPP1R12A Frame_Shift_Del p.N540Ifs*23 0.45 TCGA-A6-6781-01 12 80203702 80203702 G A PPP1R12A Missense_Mutation p.T443M 0.21 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 12 81331569 81331569 G A LIN7A 5'UTR 0.30 TCGA-A6-6781-01 12 8276483 8276483 G A CLEC4A Silent p.S3S 0.26 TCGA-A6-6781-01 12 85279790 85279790 A - SLC6A15 Frame_Shift_Del p.F116Sfs*21 0.14 TCGA-A6-6781-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.17 TCGA-A6-6781-01 12 89818992 89818992 G A POC1B Silent p.L426L 0.36 TCGA-A6-6781-01 12 89997946 89997946 C T ATP2B1 Missense_Mutation p.A874T 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 12 90010730 90010730 G A ATP2B1 Missense_Mutation p.P639L 0.25 deleterious(0) possibly_damaging(0.667) TCGA-A6-6781-01 12 9242969 9242969 A G A2M Missense_Mutation p.V860A 0.19 deleterious(0) benign(0.142) TCGA-A6-6781-01 12 9262476 9262476 G T A2M Silent p.T220T 0.34 TCGA-A6-6781-01 12 92821892 92821892 C A CLLU1OS Nonsense_Mutation p.E11* 0.28 TCGA-A6-6781-01 12 98909825 98909825 G - TMPO Frame_Shift_Del p.P63Rfs*48 0.33 TCGA-A6-6781-01 12 98927737 98927737 G A TMPO Missense_Mutation p.A568T 0.18 tolerated_low_confidence(0.08) benign(0.006) TCGA-A6-6781-01 12 99020023 99020023 C T IKBIP Silent p.L273L 0.27 TCGA-A6-6781-01 13 103326661 103326661 G A TPP2 Missense_Mutation p.V1121I 0.14 tolerated(1) benign(0.002) TCGA-A6-6781-01 13 107145544 107145544 G A EFNB2 Silent p.N282N 0.12 TCGA-A6-6781-01 13 107145556 107145556 G A EFNB2 Silent p.S278S 0.12 TCGA-A6-6781-01 13 109793373 109793373 C - MYO16 Frame_Shift_Del p.A1585Rfs*18 0.30 TCGA-A6-6781-01 13 110436455 110436455 G A IRS2 Missense_Mutation p.A649V 0.26 tolerated(0.33) benign(0.002) TCGA-A6-6781-01 13 110802753 110802753 C T COL4A1 Missense_Mutation p.R1656H 0.20 unknown(0) TCGA-A6-6781-01 13 110847452 110847452 T C COL4A1 Silent p.E433E 0.22 TCGA-A6-6781-01 13 111114488 111114488 G A COL4A2 Missense_Mutation p.G542R 0.22 probably_damaging(1) TCGA-A6-6781-01 13 113678964 113678964 G A MCF2L Missense_Mutation p.R57Q 0.28 deleterious(0.03) probably_damaging(0.994) TCGA-A6-6781-01 13 114523894 114523894 G A GAS6 Silent p.Y660Y 0.18 TCGA-A6-6781-01 13 115037914 115037914 C T CDC16 Missense_Mutation p.T620M 0.28 deleterious_low_confidence(0) benign(0.432) TCGA-A6-6781-01 13 23909402 23909403 - A SACS Frame_Shift_Ins p.L2871Ffs*29 0.19 TCGA-A6-6781-01 13 23932517 23932517 G A SACS Silent p.V187V 0.30 TCGA-A6-6781-01 13 24190123 24190123 C T TNFRSF19 Missense_Mutation p.R100C 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-A6-6781-01 13 25480243 25480243 G A CENPJ Missense_Mutation p.R645C 0.27 tolerated(0.22) benign(0.001) TCGA-A6-6781-01 13 27333249 27333249 G A GPR12 Missense_Mutation p.A239V 0.25 deleterious(0.03) probably_damaging(0.911) TCGA-A6-6781-01 13 29286951 29286951 A - SLC46A3 Frame_Shift_Del p.L309* 0.19 TCGA-A6-6781-01 13 29291992 29291992 A G SLC46A3 Silent p.S48S 0.24 TCGA-A6-6781-01 13 29675030 29675030 G A MTUS2 Missense_Mutation p.R866Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6781-01 13 31732974 31732974 T - HSPH1 Frame_Shift_Del p.N45Ifs*43 0.18 TCGA-A6-6781-01 13 33635274 33635274 G A KL Silent p.T686T 0.23 TCGA-A6-6781-01 13 36046597 36046598 CT - NBEA Frame_Shift_Del p.S2172Hfs*12 0.20 TCGA-A6-6781-01 13 37006866 37006866 G T CCNA1 Missense_Mutation p.Q36H 0.20 tolerated_low_confidence(0.12) benign(0) TCGA-A6-6781-01 13 37619458 37619459 AA - SUPT20H Frame_Shift_Del p.L73Vfs*12 0.19 TCGA-A6-6781-01 13 39266039 39266039 C T FREM2 Missense_Mutation p.R1520W 0.23 deleterious(0) probably_damaging(0.973) TCGA-A6-6781-01 13 39422625 39422625 G A FREM2 Missense_Mutation p.R2066H 0.17 tolerated(0.19) benign(0.036) TCGA-A6-6781-01 13 41656965 41656965 C T WBP4 Missense_Mutation p.A349V 0.26 deleterious(0.02) benign(0.235) TCGA-A6-6781-01 13 42144707 42144707 G A VWA8 Nonsense_Mutation p.R1836* 0.21 TCGA-A6-6781-01 13 46056551 46056551 C T COG3 Silent p.D220D 0.20 TCGA-A6-6781-01 13 46716466 46716466 C T LCP1 Missense_Mutation p.R488H 0.20 tolerated(0.16) benign(0.008) TCGA-A6-6781-01 13 49086154 49086154 C - RCBTB2 Frame_Shift_Del p.E225Rfs*46 0.16 TCGA-A6-6781-01 13 50092209 50092209 G A PHF11 Missense_Mutation p.C127Y 0.21 deleterious(0.02) probably_damaging(0.942) TCGA-A6-6781-01 13 50623318 50623318 G A DLEU2 Intron 0.27 TCGA-A6-6781-01 13 51598414 51598414 G A RNA5SP29 3'Flank 0.30 TCGA-A6-6781-01 13 51936041 51936041 T - SERPINE3 Frame_Shift_Del p.F396Lfs*6 0.21 TCGA-A6-6781-01 13 58207161 58207161 G A PCDH17 Missense_Mutation p.A161T 0.15 tolerated(0.2) benign(0.034) TCGA-A6-6781-01 13 58208112 58208112 G A PCDH17 Missense_Mutation p.V478M 0.09 tolerated(0.15) benign(0.066) TCGA-A6-6781-01 13 58208357 58208357 G A PCDH17 Silent p.A559A 0.24 TCGA-A6-6781-01 13 72204844 72204844 T C DACH1 Missense_Mutation p.T326A 0.25 probably_damaging(0.954) TCGA-A6-6781-01 13 73636106 73636106 C T KLF5 Silent p.F123F 0.19 TCGA-A6-6781-01 13 75936536 75936536 G A TBC1D4 Missense_Mutation p.R236C 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 13 76382228 76382228 T C LMO7 Silent p.P370P 0.21 TCGA-A6-6781-01 13 76395516 76395516 G A LMO7 Missense_Mutation p.R571H 0.21 tolerated(0.51) benign(0) TCGA-A6-6781-01 13 76415964 76415965 - GA LMO7 Frame_Shift_Ins p.K1064Gfs*36 0.22 TCGA-A6-6781-01 13 79951596 79951596 A G RBM26 Missense_Mutation p.L82P 0.08 deleterious(0) unknown(0) TCGA-A6-6781-01 13 84455772 84455772 G - SLITRK1 5'UTR 0.21 TCGA-A6-6781-01 13 96205117 96205117 G A CLDN10 Missense_Mutation p.G37D 0.23 deleterious(0.01) possibly_damaging(0.756) TCGA-A6-6781-01 13 96438287 96438287 G A DNAJC3 Silent p.S390S 0.22 TCGA-A6-6781-01 13 98654812 98654812 C T IPO5 Silent p.I418I 0.18 TCGA-A6-6781-01 13 99337038 99337038 G A SLC15A1 Silent p.N689N 0.17 TCGA-A6-6781-01 14 100604253 100604253 C T EVL Intron 0.20 TCGA-A6-6781-01 14 100625992 100625992 G A DEGS2 5'UTR 0.27 TCGA-A6-6781-01 14 100992369 100992370 - T WDR25 Frame_Shift_Ins p.H424Pfs*45 0.11 TCGA-A6-6781-01 14 100996476 100996476 G A WDR25 3'UTR 0.47 TCGA-A6-6781-01 14 101340843 101340843 G - MIR337 RNA 0.28 TCGA-A6-6781-01 14 101522631 101522631 G A MIR323B RNA 0.16 TCGA-A6-6781-01 14 102028551 102028551 G A DIO3 Missense_Mutation p.A240T 0.24 tolerated(0.18) benign(0.024) TCGA-A6-6781-01 14 102466336 102466336 G A DYNC1H1 Missense_Mutation p.R1272H 0.19 possibly_damaging(0.9) TCGA-A6-6781-01 14 102550211 102550211 T - HSP90AA1 Frame_Shift_Del p.K541Nfs*3 0.20 TCGA-A6-6781-01 14 102695519 102695519 C T MOK 3'UTR 0.29 TCGA-A6-6781-01 14 103447224 103447224 A - CDC42BPB Frame_Shift_Del p.F342Lfs*4 0.18 TCGA-A6-6781-01 14 103932388 103932388 G A MARK3 Missense_Mutation p.R286H 0.23 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 14 104641682 104641682 G A KIF26A Missense_Mutation p.G853S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6781-01 14 105167950 105167950 G A INF2 Missense_Mutation p.R83Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 14 105180929 105180929 G A INF2 Missense_Mutation p.E1144K 0.12 tolerated_low_confidence(0.22) unknown(0) TCGA-A6-6781-01 14 105240285 105240285 G A AKT1 Silent p.R222R 0.30 TCGA-A6-6781-01 14 105270841 105270841 G A ZBTB42 3'UTR 0.21 TCGA-A6-6781-01 14 105350290 105350290 C T CEP170B Missense_Mutation p.R392W 0.20 deleterious(0) probably_damaging(0.988) TCGA-A6-6781-01 14 105477662 105477662 G A CDCA4 Missense_Mutation p.A202V 0.30 tolerated(0.12) benign(0.003) TCGA-A6-6781-01 14 105518033 105518033 C T GPR132 Silent p.A147A 0.19 TCGA-A6-6781-01 14 105617982 105617982 G A JAG2 Silent p.S378S 0.26 TCGA-A6-6781-01 14 105639534 105639534 G A NUDT14 Missense_Mutation p.R165C 0.25 tolerated(0.17) possibly_damaging(0.896) TCGA-A6-6781-01 14 105739205 105739205 T C BRF1 Missense_Mutation p.N98D 0.24 tolerated(0.57) benign(0.027) TCGA-A6-6781-01 14 106320789 106320789 G A IGHM Silent p.L341L 0.32 TCGA-A6-6781-01 14 106691918 106691919 - C IGHV3-21 Frame_Shift_Ins p.S36Vfs*15 0.10 TCGA-A6-6781-01 14 106967071 106967071 G A IGHV1-46 Missense_Mutation p.T110M 0.32 tolerated(0.1) possibly_damaging(0.588) TCGA-A6-6781-01 14 107218790 107218790 G A IGHV3-74 Silent p.Y79Y 0.22 TCGA-A6-6781-01 14 20404282 20404282 G A OR4K1 Missense_Mutation p.V153I 0.08 tolerated(0.57) benign(0.002) TCGA-A6-6781-01 14 20502354 20502354 G T OR4K13 Silent p.A188A 0.22 TCGA-A6-6781-01 14 21542359 21542359 G A ARHGEF40 Missense_Mutation p.R157Q 0.15 deleterious(0) probably_damaging(0.945) TCGA-A6-6781-01 14 21862241 21862241 G - CHD8 Frame_Shift_Del p.L1905Ffs*30 0.21 TCGA-A6-6781-01 14 23346266 23346266 C T LRP10 Missense_Mutation p.R558C 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-A6-6781-01 14 23353941 23353941 C T REM2 Silent p.S54S 0.15 TCGA-A6-6781-01 14 23456542 23456544 TCT - C14orf93 In_Frame_Del p.E501del 0.21 TCGA-A6-6781-01 14 23513218 23513218 G T PSMB11 3'UTR 0.17 TCGA-A6-6781-01 14 23528365 23528365 G A ACIN1 Missense_Mutation p.R1340C 0.24 unknown(0) TCGA-A6-6781-01 14 23609774 23609774 C T SLC7A8 Missense_Mutation p.G232S 0.16 deleterious(0) probably_damaging(0.99) TCGA-A6-6781-01 14 23847969 23847969 C - CMTM5 Intron 0.15 TCGA-A6-6781-01 14 23886519 23886519 G A MYH7 Silent p.A1454A 0.12 TCGA-A6-6781-01 14 23944989 23944989 T C NGDN Splice_Site p.X140_splice 0.15 TCGA-A6-6781-01 14 24028870 24028870 G A AP1G2 3'UTR 0.19 TCGA-A6-6781-01 14 24046571 24046571 G A JPH4 Missense_Mutation p.T31M 0.32 deleterious(0) probably_damaging(0.941) TCGA-A6-6781-01 14 24529215 24529215 C T LRRC16B Silent p.S635S 0.26 TCGA-A6-6781-01 14 24784882 24784882 C - LTB4R Frame_Shift_Del p.S11Hfs*2 0.23 TCGA-A6-6781-01 14 24841801 24841801 G A NFATC4 Missense_Mutation p.V514I 0.27 tolerated(0.17) benign(0.018) TCGA-A6-6781-01 14 24845879 24845879 G A NFATC4 Silent p.R875R 0.15 TCGA-A6-6781-01 14 26917520 26917520 G A NOVA1 Missense_Mutation p.A390V 0.25 tolerated(0.12) benign(0.004) TCGA-A6-6781-01 14 30133034 30133034 T C PRKD1 Silent p.A189A 0.23 TCGA-A6-6781-01 14 31554170 31554170 C T AP4S1 3'UTR 0.10 TCGA-A6-6781-01 14 31787499 31787499 C T HEATR5A Splice_Site p.X1324_splice 0.15 TCGA-A6-6781-01 14 33291769 33291769 A - AKAP6 Frame_Shift_Del p.N1585Mfs*12 0.15 TCGA-A6-6781-01 14 36005056 36005057 - T INSM2 Frame_Shift_Ins p.S536* 0.27 TCGA-A6-6781-01 14 36005556 36005556 T - INSM2 3'UTR 0.24 TCGA-A6-6781-01 14 36096509 36096509 T C RALGAPA1 Missense_Mutation p.Q1709R 0.21 deleterious(0.01) possibly_damaging(0.547) TCGA-A6-6781-01 14 37132411 37132411 G A PAX9 Missense_Mutation p.R105H 0.18 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 14 38679629 38679629 C T SSTR1 Silent p.N345N 0.27 TCGA-A6-6781-01 14 39734524 39734524 C T CTAGE5 5'Flank 0.17 TCGA-A6-6781-01 14 50117109 50117110 AT - POLE2 Frame_Shift_Del p.Y457Cfs*9 0.19 TCGA-A6-6781-01 14 50246490 50246490 T A KLHDC2 Missense_Mutation p.Y247N 0.17 deleterious(0.01) benign(0.238) TCGA-A6-6781-01 14 50272745 50272745 A G NEMF Silent p.H617H 0.16 TCGA-A6-6781-01 14 51194340 51194340 G A NIN Intron 0.31 TCGA-A6-6781-01 14 51225062 51225065 TCTC - NIN Frame_Shift_Del p.E895Cfs*10 0.27 TCGA-A6-6781-01 14 51237214 51237215 CT - NIN Frame_Shift_Del p.E442Afs*14 0.13 TCGA-A6-6781-01 14 51259466 51259466 C T NIN Silent p.A133A 0.16 TCGA-A6-6781-01 14 52509009 52509009 C T NID2 Missense_Mutation p.V547M 0.21 deleterious(0.02) probably_damaging(0.945) TCGA-A6-6781-01 14 53003453 53003453 C T TXNDC16 Missense_Mutation p.V126I 0.24 tolerated(0.15) benign(0.077) TCGA-A6-6781-01 14 54896992 54896992 A - CNIH1 Frame_Shift_Del p.Y132Tfs*6 0.18 TCGA-A6-6781-01 14 55169033 55169033 G A SAMD4A Silent p.L150L 0.21 TCGA-A6-6781-01 14 55529641 55529641 G A MAPK1IP1L Silent p.P108P 0.24 TCGA-A6-6781-01 14 59112989 59112989 G A DACT1 Missense_Mutation p.E550K 0.22 deleterious(0.01) probably_damaging(0.958) TCGA-A6-6781-01 14 59113493 59113493 G A DACT1 Missense_Mutation p.A718T 0.28 deleterious(0) possibly_damaging(0.512) TCGA-A6-6781-01 14 59835592 59835592 T - DAAM1 3'UTR 0.24 TCGA-A6-6781-01 14 60074166 60074166 C T RTN1 Missense_Mutation p.V604M 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-A6-6781-01 14 61449340 61449340 G A SLC38A6 Missense_Mutation p.G74S 0.18 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 14 64152767 64152768 - A SGPP1 3'UTR 0.19 TCGA-A6-6781-01 14 64589031 64589031 C T SYNE2 Silent p.D4436D 0.27 TCGA-A6-6781-01 14 64593399 64593399 C T SYNE2 Silent p.G4597G 0.20 TCGA-A6-6781-01 14 64596886 64596886 G T SYNE2 Missense_Mutation p.G4754W 0.26 probably_damaging(1) TCGA-A6-6781-01 14 65009358 65009358 C T HSPA2 Silent p.H597H 0.25 TCGA-A6-6781-01 14 65511154 65511154 C T FNTB Silent p.H316H 0.17 TCGA-A6-6781-01 14 66200011 66200011 G A FUT8 Missense_Mutation p.R441Q 0.16 deleterious(0) probably_damaging(0.977) TCGA-A6-6781-01 14 69256565 69256565 G A ZFP36L1 Silent p.A234A 0.31 TCGA-A6-6781-01 14 69341709 69341709 C T ACTN1 Missense_Mutation p.R871H 0.20 deleterious(0) benign(0.103) TCGA-A6-6781-01 14 69619708 69619708 G A DCAF5 5'UTR 0.21 TCGA-A6-6781-01 14 69800217 69800217 G A GALNT16 Silent p.T289T 0.28 TCGA-A6-6781-01 14 71555128 71555128 G A PCNX Missense_Mutation p.A1807T 0.19 deleterious(0) probably_damaging(0.965) TCGA-A6-6781-01 14 72055110 72055110 G A SIPA1L1 Missense_Mutation p.S174N 0.15 deleterious(0) probably_damaging(0.968) TCGA-A6-6781-01 14 72191389 72191389 G A SIPA1L1 Missense_Mutation p.R1505H 0.27 tolerated(0.05) benign(0.017) TCGA-A6-6781-01 14 73029232 73029232 C T RGS6 3'Flank 0.21 TCGA-A6-6781-01 14 74179475 74179475 G A PNMA1 Missense_Mutation p.R290C 0.25 deleterious(0) probably_damaging(0.984) TCGA-A6-6781-01 14 75265533 75265533 A - YLPM1 Frame_Shift_Del p.M1180Cfs*27 0.18 TCGA-A6-6781-01 14 75747303 75747303 A - FOS Frame_Shift_Del p.R146Gfs*16 0.21 TCGA-A6-6781-01 14 76549898 76549898 C T IFT43 Missense_Mutation p.A207V 0.20 tolerated_low_confidence(0.69) benign(0.007) TCGA-A6-6781-01 14 77708694 77708694 C T TMEM63C Missense_Mutation p.R357C 0.24 deleterious(0) possibly_damaging(0.717) TCGA-A6-6781-01 14 77710772 77710772 C T TMEM63C Silent p.S474S 0.16 TCGA-A6-6781-01 14 77762517 77762517 C T POMT2 Missense_Mutation p.R369H 0.23 tolerated(0.05) benign(0.077) TCGA-A6-6781-01 14 77809655 77809655 G A TMED8 Missense_Mutation p.A209V 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 14 78205175 78205175 G A SNW1 Missense_Mutation p.A160V 0.23 tolerated(0.08) benign(0.056) TCGA-A6-6781-01 14 88946362 88946362 C T PTPN21 Silent p.S471S 0.22 TCGA-A6-6781-01 14 90730110 90730110 C T PSMC1 Silent p.G128G 0.25 TCGA-A6-6781-01 14 91739484 91739484 G A CCDC88C Missense_Mutation p.R1858W 0.25 deleterious(0) probably_damaging(0.972) TCGA-A6-6781-01 14 92905704 92905704 C T SLC24A4 Missense_Mutation p.A115V 0.18 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 14 93460248 93460248 C T ITPK1 Missense_Mutation p.R114Q 0.17 tolerated(0.45) benign(0.018) TCGA-A6-6781-01 14 93460301 93460301 C T ITPK1 Silent p.P96P 0.19 TCGA-A6-6781-01 14 93709239 93709240 - T BTBD7 Frame_Shift_Ins p.H927Tfs*21 0.15 TCGA-A6-6781-01 14 94405542 94405542 T C ASB2 Missense_Mutation p.Y510C 0.20 deleterious(0) possibly_damaging(0.886) TCGA-A6-6781-01 14 94420823 94420823 C T ASB2 Silent p.A106A 0.25 TCGA-A6-6781-01 14 95669364 95669364 G A CLMN Silent p.A774A 0.42 TCGA-A6-6781-01 14 95921988 95921988 C T SYNE3 Missense_Mutation p.R288Q 0.22 tolerated(1) benign(0.002) TCGA-A6-6781-01 14 99641466 99641466 G A BCL11B Silent p.G569G 0.21 TCGA-A6-6781-01 15 23014497 23014497 C T NIPA2 Silent p.A76A 0.19 TCGA-A6-6781-01 15 23811282 23811282 C T MKRN3 Missense_Mutation p.S118L 0.31 tolerated(0.06) probably_damaging(0.996) TCGA-A6-6781-01 15 27125994 27125994 T - GABRA5 Frame_Shift_Del p.S31Hfs*8 0.18 TCGA-A6-6781-01 15 27128634 27128634 G A GABRA5 Missense_Mutation p.A143T 0.15 tolerated(0.05) possibly_damaging(0.733) TCGA-A6-6781-01 15 28377293 28377293 C T HERC2 Missense_Mutation p.G4175S 0.24 probably_damaging(1) TCGA-A6-6781-01 15 28443535 28443535 C T HERC2 Missense_Mutation p.G2667E 0.22 possibly_damaging(0.652) TCGA-A6-6781-01 15 28501241 28501241 A G HERC2 Missense_Mutation p.C914R 0.36 benign(0.006) TCGA-A6-6781-01 15 30003072 30003072 C T TJP1 Silent p.A1445A 0.25 TCGA-A6-6781-01 15 32916446 32916446 T - ARHGAP11A Frame_Shift_Del p.F125Lfs*18 0.17 TCGA-A6-6781-01 15 34395835 34395835 G A PGBD4 Missense_Mutation p.R368K 0.32 tolerated(1) benign(0.01) TCGA-A6-6781-01 15 34634207 34634207 T C NOP10 Missense_Mutation p.K53E 0.28 deleterious(0.01) benign(0.077) TCGA-A6-6781-01 15 39547041 39547041 T A C15orf54 3'UTR 0.26 TCGA-A6-6781-01 15 40094104 40094104 C T GPR176 Silent p.Q259Q 0.20 TCGA-A6-6781-01 15 40398144 40398144 C A BMF Missense_Mutation p.Q48H 0.23 tolerated_low_confidence(0.27) benign(0.001) TCGA-A6-6781-01 15 40558460 40558460 C - PAK6 Frame_Shift_Del p.T210Rfs*8 0.25 TCGA-A6-6781-01 15 40662409 40662409 C T DISP2 Nonsense_Mutation p.R1366* 0.30 TCGA-A6-6781-01 15 40708358 40708358 G A IVD Missense_Mutation p.D351N 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 15 41064324 41064324 C T C15orf62 3'UTR 0.19 TCGA-A6-6781-01 15 41680700 41680701 - A NDUFAF1 Frame_Shift_Ins p.F261Lfs*3 0.18 TCGA-A6-6781-01 15 41793881 41793881 C T ITPKA Missense_Mutation p.S212L 0.17 deleterious(0.01) possibly_damaging(0.645) TCGA-A6-6781-01 15 41961936 41961938 AAT - MGA In_Frame_Del p.N283del 0.31 TCGA-A6-6781-01 15 42550874 42550874 C A TMEM87A Intron 0.25 TCGA-A6-6781-01 15 42731704 42731704 T C ZNF106 Silent p.E1334E 0.16 TCGA-A6-6781-01 15 43027719 43027719 G A CDAN1 Missense_Mutation p.S311L 0.24 tolerated(0.06) probably_damaging(0.975) TCGA-A6-6781-01 15 43122255 43122255 G A TTBK2 Missense_Mutation p.R105C 0.17 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 15 44087678 44087678 T G SERINC4 Missense_Mutation p.Q417H 0.24 deleterious(0.01) possibly_damaging(0.863) TCGA-A6-6781-01 15 44843117 44843120 AAGT - EIF3J Frame_Shift_Del p.V65Nfs*4 0.20 TCGA-A6-6781-01 15 44876227 44876227 C T SPG11 Missense_Mutation p.R1884H 0.31 tolerated(0.25) benign(0) TCGA-A6-6781-01 15 45365802 45365802 G A SORD 3'UTR 0.24 TCGA-A6-6781-01 15 45445637 45445637 G A DUOX1 Missense_Mutation p.V1162I 0.18 tolerated(0.93) benign(0.005) TCGA-A6-6781-01 15 48634422 48634444 TATGATCAAGGAAAAGATCATTA ATGATCAAGGAAAAGATCATT DUT 3'UTR 0.21 TCGA-A6-6781-01 15 48755324 48755324 G A FBN1 Missense_Mutation p.R1727W 0.27 probably_damaging(1) TCGA-A6-6781-01 15 48807716 48807716 G A FBN1 Missense_Mutation p.P446S 0.28 benign(0.002) TCGA-A6-6781-01 15 50999938 50999938 A - SPPL2A 3'UTR 0.17 TCGA-A6-6781-01 15 52414967 52414967 T G GNB5 Splice_Site p.X393_splice 0.17 TCGA-A6-6781-01 15 52545602 52545602 G A MYO5C Missense_Mutation p.T483M 0.25 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 15 52901856 52901856 C A FAM214A Nonsense_Mutation p.G419* 0.23 TCGA-A6-6781-01 15 54685324 54685324 C T UNC13C Silent p.L1598L 0.19 TCGA-A6-6781-01 15 55652706 55652706 T - CCPG1 Frame_Shift_Del p.K422Rfs*3 0.17 TCGA-A6-6781-01 15 56996406 56996406 G A ZNF280D Nonsense_Mutation p.Q30* 0.20 TCGA-A6-6781-01 15 58938273 58938273 C T ADAM10 Missense_Mutation p.R239Q 0.19 deleterious(0.04) benign(0.16) TCGA-A6-6781-01 15 59180631 59180631 C T SLTM Silent p.R776R 0.24 TCGA-A6-6781-01 15 59204789 59204789 A G SLTM Silent p.G178G 0.16 TCGA-A6-6781-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.30 TCGA-A6-6781-01 15 62211501 62211501 C T VPS13C Missense_Mutation p.R2542H 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-A6-6781-01 15 62283994 62283994 C T VPS13C Missense_Mutation p.R454Q 0.19 deleterious(0.01) possibly_damaging(0.703) TCGA-A6-6781-01 15 63089484 63089484 G A TLN2 Silent p.A2039A 0.24 TCGA-A6-6781-01 15 63673895 63673895 C T CA12 Missense_Mutation p.A9T 0.21 tolerated_low_confidence(0.09) benign(0.006) TCGA-A6-6781-01 15 63967132 63967132 G A HERC1 Nonsense_Mutation p.R2419* 0.19 TCGA-A6-6781-01 15 65347403 65347403 G A RASL12 Missense_Mutation p.A212V 0.26 deleterious_low_confidence(0.03) benign(0.12) TCGA-A6-6781-01 15 65625609 65625609 C A IGDCC3 Missense_Mutation p.R323L 0.21 tolerated(0.16) benign(0.06) TCGA-A6-6781-01 15 65772602 65772602 C T DPP8 Silent p.T434T 0.15 TCGA-A6-6781-01 15 66214725 66214725 G A MEGF11 Silent p.S636S 0.26 TCGA-A6-6781-01 15 68480182 68480182 C T PIAS1 3'UTR 0.19 TCGA-A6-6781-01 15 69560650 69560650 C T GLCE Silent p.S307S 0.25 TCGA-A6-6781-01 15 72432307 72432307 T - SENP8 Frame_Shift_Del p.H117Ifs*16 0.17 TCGA-A6-6781-01 15 74219242 74219242 C T LOXL1 Missense_Mutation p.R40W 0.21 deleterious(0) probably_damaging(0.996) TCGA-A6-6781-01 15 74284444 74284444 C A STOML1 Missense_Mutation p.G41W 0.24 deleterious(0) probably_damaging(0.958) TCGA-A6-6781-01 15 74290573 74290573 C T PML Missense_Mutation p.R120W 0.22 deleterious(0) probably_damaging(0.931) TCGA-A6-6781-01 15 75015222 75015222 C T CYP1A1 Missense_Mutation p.V73M 0.20 deleterious(0) probably_damaging(0.99) TCGA-A6-6781-01 15 75042378 75042378 G A CYP1A2 Missense_Mutation p.R100Q 0.23 tolerated(0.24) benign(0.042) TCGA-A6-6781-01 15 75248464 75248464 G - RPP25 Frame_Shift_Del p.P154Rfs*20 0.27 TCGA-A6-6781-01 15 75499424 75499424 C - C15orf39 Frame_Shift_Del p.S347Lfs*30 0.15 TCGA-A6-6781-01 15 75648272 75648272 A G MAN2C1 Missense_Mutation p.L1050P 0.21 deleterious(0) unknown(0) TCGA-A6-6781-01 15 75684712 75684712 G A SIN3A Missense_Mutation p.R908W 0.25 deleterious(0) possibly_damaging(0.902) TCGA-A6-6781-01 15 75932125 75932125 C T IMP3 Missense_Mutation p.A129T 0.22 tolerated(1) benign(0.004) TCGA-A6-6781-01 15 78790542 78790542 G A IREB2 3'UTR 0.24 TCGA-A6-6781-01 15 79059768 79059768 G A ADAMTS7 Missense_Mutation p.R938C 0.11 deleterious(0.01) possibly_damaging(0.776) TCGA-A6-6781-01 15 79068555 79068555 C T ADAMTS7 Missense_Mutation p.A561T 0.24 tolerated(0.09) benign(0.274) TCGA-A6-6781-01 15 79083072 79083072 C T ADAMTS7 Missense_Mutation p.S323N 0.18 tolerated(0.36) benign(0.03) TCGA-A6-6781-01 15 79382825 79382825 G A RASGRF1 Missense_Mutation p.R6W 0.11 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 15 81271532 81271532 C - MESDC2 3'UTR 0.30 TCGA-A6-6781-01 15 82444553 82444553 G A EFTUD1 Missense_Mutation p.L748F 0.24 tolerated(0.62) benign(0.005) TCGA-A6-6781-01 15 82575018 82575018 A - FAM154B Frame_Shift_Del p.R273Efs*13 0.21 TCGA-A6-6781-01 15 83346471 83346471 G A AP3B2 Missense_Mutation p.R444C 0.26 deleterious(0.02) possibly_damaging(0.682) TCGA-A6-6781-01 15 85166096 85166096 C T ZSCAN2 3'UTR 0.14 TCGA-A6-6781-01 15 85359958 85359958 C T ALPK3 5'UTR 0.25 TCGA-A6-6781-01 15 85399979 85399979 G T ALPK3 Missense_Mutation p.Q872H 0.17 deleterious_low_confidence(0) possibly_damaging(0.646) TCGA-A6-6781-01 15 85401704 85401704 C T ALPK3 Silent p.G1447G 0.18 TCGA-A6-6781-01 15 85487813 85487813 A G SLC28A1 Silent p.Q560Q 0.13 TCGA-A6-6781-01 15 86228047 86228047 A G AKAP13 Silent p.K1748K 0.19 TCGA-A6-6781-01 15 86262336 86262336 C T AKAP13 Missense_Mutation p.R2015C 0.20 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 15 89442994 89442994 C - MFGE8 Frame_Shift_Del p.A307Pfs*66 0.20 TCGA-A6-6781-01 15 89859551 89859551 T - POLG 3'UTR 0.14 TCGA-A6-6781-01 15 90127640 90127640 C T TICRR Missense_Mutation p.T353M 0.23 tolerated(0.4) benign(0.016) TCGA-A6-6781-01 15 90451516 90451516 G T C15orf38-AP3S2 Silent p.S99S 0.25 TCGA-A6-6781-01 15 93588420 93588420 G A RGMA Silent p.D395D 0.25 TCGA-A6-6781-01 15 99473524 99473524 C T IGF1R Silent p.S982S 0.20 TCGA-A6-6781-01 16 11001355 11001355 G A CIITA Missense_Mutation p.R669H 0.14 deleterious(0.01) possibly_damaging(0.893) TCGA-A6-6781-01 16 1129196 1129196 G A SSTR5 Missense_Mutation p.V110I 0.23 tolerated(0.13) benign(0.016) TCGA-A6-6781-01 16 1144872 1144872 G T C1QTNF8 Silent p.A17A 0.08 TCGA-A6-6781-01 16 11770835 11770835 G T SNN 3'UTR 0.22 TCGA-A6-6781-01 16 11980440 11980440 G A GSPT1 Missense_Mutation p.P381S 0.17 deleterious(0) probably_damaging(0.913) TCGA-A6-6781-01 16 138882 138882 C T NPRL3 Missense_Mutation p.S453N 0.25 tolerated(0.15) benign(0.142) TCGA-A6-6781-01 16 14761760 14761760 G A BFAR 3'UTR 0.23 TCGA-A6-6781-01 16 15023240 15023240 G A RP11-958N24.1 RNA 0.15 TCGA-A6-6781-01 16 1549301 1549301 C T TELO2 Silent p.T300T 0.23 TCGA-A6-6781-01 16 1576635 1576635 C A IFT140 Silent p.T854T 0.47 TCGA-A6-6781-01 16 16173267 16173267 G A ABCC1 Missense_Mutation p.G683R 0.35 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 16 16418901 16418901 G A PKD1P1 RNA 0.15 TCGA-A6-6781-01 16 1818709 1818709 G A MAPK8IP3 Missense_Mutation p.G1299R 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-A6-6781-01 16 1841455 1841455 C A IGFALS Missense_Mutation p.G360C 0.23 deleterious(0.03) probably_damaging(0.981) TCGA-A6-6781-01 16 18870992 18870992 G A SMG1 Missense_Mutation p.P1280L 0.25 tolerated(0.09) probably_damaging(0.988) TCGA-A6-6781-01 16 18908139 18908139 C T SMG1 Missense_Mutation p.A78T 0.27 tolerated_low_confidence(0.62) benign(0.001) TCGA-A6-6781-01 16 19195374 19195374 C T SYT17 Missense_Mutation p.R286C 0.26 deleterious(0) probably_damaging(0.973) TCGA-A6-6781-01 16 2012130 2012130 C T RPS2 Missense_Mutation p.R284Q 0.24 deleterious(0.01) benign(0.014) TCGA-A6-6781-01 16 20355461 20355461 G A UMOD Missense_Mutation p.L406F 0.20 tolerated(0.13) probably_damaging(0.961) TCGA-A6-6781-01 16 2051609 2051609 G A ZNF598 Missense_Mutation p.R330C 0.21 probably_damaging(0.988) TCGA-A6-6781-01 16 20752969 20752969 G A THUMPD1 Silent p.C31C 0.20 TCGA-A6-6781-01 16 21279043 21279043 G A CRYM Missense_Mutation p.R169C 0.22 deleterious(0) possibly_damaging(0.827) TCGA-A6-6781-01 16 22122315 22122315 C T VWA3A Missense_Mutation p.T230I 0.25 tolerated(0.28) benign(0.021) TCGA-A6-6781-01 16 22268599 22268599 G A EEF2K Missense_Mutation p.R265H 0.21 deleterious(0.01) benign(0.159) TCGA-A6-6781-01 16 22314270 22314270 G A POLR3E 5'UTR 0.23 TCGA-A6-6781-01 16 2282275 2282275 C T E4F1 Silent p.L173L 0.22 TCGA-A6-6781-01 16 2294451 2294451 G A ECI1 Silent p.L133L 0.27 TCGA-A6-6781-01 16 23366666 23366666 C T SCNN1B Missense_Mutation p.A211V 0.25 deleterious(0.02) benign(0.35) TCGA-A6-6781-01 16 23574051 23574051 G T UBFD1 Nonsense_Mutation p.E246* 0.19 TCGA-A6-6781-01 16 23692253 23692253 C T PLK1 Missense_Mutation p.T199I 0.26 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 16 23701241 23701241 C T PLK1 Missense_Mutation p.R557W 0.18 deleterious(0) benign(0.174) TCGA-A6-6781-01 16 23703328 23703328 G A ERN2 Missense_Mutation p.H826Y 0.19 tolerated(0.07) probably_damaging(1) TCGA-A6-6781-01 16 24105522 24105522 T C PRKCB Missense_Mutation p.V242A 0.22 deleterious(0.03) benign(0.381) TCGA-A6-6781-01 16 2489444 2489444 G A CCNF Missense_Mutation p.D229N 0.21 tolerated(0.69) benign(0.002) TCGA-A6-6781-01 16 25238424 25238424 G A AQP8 Missense_Mutation p.R213H 0.18 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 16 2578538 2578538 C T AMDHD2 Silent p.D316D 0.09 TCGA-A6-6781-01 16 26147122 26147122 C T HS3ST4 Silent p.I308I 0.20 TCGA-A6-6781-01 16 27230281 27230281 G T KDM8 Splice_Site p.X320_splice 0.23 TCGA-A6-6781-01 16 27761013 27761013 G - KIAA0556 Frame_Shift_Del p.G912Dfs*85 0.30 TCGA-A6-6781-01 16 2811867 2811867 T C SRRM2 Silent p.A446A 0.14 TCGA-A6-6781-01 16 2817201 2817201 A G SRRM2 Silent p.P2224P 0.40 TCGA-A6-6781-01 16 28481750 28481750 G A NPIPB7 Missense_Mutation p.R4C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-A6-6781-01 16 28943808 28943808 C A CD19 Missense_Mutation p.P77H 0.28 deleterious(0.03) possibly_damaging(0.54) TCGA-A6-6781-01 16 28996227 28996227 G - LAT Frame_Shift_Del p.A18Pfs*41 0.21 TCGA-A6-6781-01 16 28997739 28997739 G A LAT Silent p.T130T 0.21 TCGA-A6-6781-01 16 29678272 29678272 A - SPN 3'UTR 0.20 TCGA-A6-6781-01 16 29755956 29755956 C T C16orf54 Missense_Mutation p.R106Q 0.16 tolerated_low_confidence(0.44) benign(0) TCGA-A6-6781-01 16 29870555 29870555 G A CDIPT Silent p.R199R 0.19 TCGA-A6-6781-01 16 29912744 29912744 G A ASPHD1 Missense_Mutation p.R151Q 0.19 tolerated(1) probably_damaging(0.953) TCGA-A6-6781-01 16 29996646 29996646 G A TAOK2 Missense_Mutation p.R512Q 0.18 deleterious(0.03) possibly_damaging(0.636) TCGA-A6-6781-01 16 3025468 3025468 C T PKMYT1 Missense_Mutation p.G242R 0.26 deleterious(0.02) possibly_damaging(0.561) TCGA-A6-6781-01 16 30364358 30364358 G - CD2BP2 Frame_Shift_Del p.P325Lfs*58 0.21 TCGA-A6-6781-01 16 30536093 30536093 G T ZNF768 Silent p.T456T 0.19 TCGA-A6-6781-01 16 30567308 30567308 G A ZNF764 Missense_Mutation p.P145L 0.15 tolerated(0.14) benign(0.02) TCGA-A6-6781-01 16 30723463 30723463 G A SRCAP Silent p.T600T 0.25 TCGA-A6-6781-01 16 3073266 3073266 G - HCFC1R1 Frame_Shift_Del p.M84* 0.25 TCGA-A6-6781-01 16 30749844 30749844 G A SRCAP Missense_Mutation p.R2828H 0.33 unknown(0) TCGA-A6-6781-01 16 30771572 30771572 T C C16orf93 Intron 0.20 TCGA-A6-6781-01 16 30773899 30773899 C T RNF40 Silent p.G11G 0.21 TCGA-A6-6781-01 16 30777763 30777763 G A RNF40 Missense_Mutation p.A393T 0.20 deleterious(0) benign(0.114) TCGA-A6-6781-01 16 30794018 30794018 C T ZNF629 Missense_Mutation p.R544H 0.23 tolerated(0.11) possibly_damaging(0.657) TCGA-A6-6781-01 16 30976970 30976970 C T SETD1A Missense_Mutation p.R590W 0.16 benign(0.022) TCGA-A6-6781-01 16 30982890 30982890 C T SETD1A Missense_Mutation p.R1070W 0.28 unknown(0) TCGA-A6-6781-01 16 30990483 30990483 C - SETD1A Frame_Shift_Del p.S1128Vfs*134 0.25 TCGA-A6-6781-01 16 31106854 31106854 C A VKORC1 5'Flank 0.17 TCGA-A6-6781-01 16 31196437 31196437 G A FUS Missense_Mutation p.R234H 0.28 deleterious(0.01) unknown(0) TCGA-A6-6781-01 16 31332907 31332907 G A ITGAM Missense_Mutation p.C655Y 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 16 31476012 31476012 C T ARMC5 Silent p.T556T 0.13 TCGA-A6-6781-01 16 31485223 31485223 G A TGFB1I1 Missense_Mutation p.G84S 0.17 tolerated(0.72) benign(0.044) TCGA-A6-6781-01 16 31895885 31895885 G A ZNF267 Missense_Mutation p.A24T 0.22 deleterious(0.04) benign(0.092) TCGA-A6-6781-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.19 TCGA-A6-6781-01 16 3613171 3613171 G A NLRC3 Silent p.S636S 0.27 TCGA-A6-6781-01 16 3708854 3708854 G A TRAP1 Silent p.I651I 0.28 TCGA-A6-6781-01 16 3714361 3714361 G A TRAP1 Missense_Mutation p.R495C 0.28 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 16 3778976 3778976 C T CREBBP Silent p.A2024A 0.22 TCGA-A6-6781-01 16 4042332 4042332 G A ADCY9 Silent p.N674N 0.18 TCGA-A6-6781-01 16 420023 420023 G A MRPL28 Missense_Mutation p.P66S 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-A6-6781-01 16 424796 424796 G A TMEM8A Silent p.R512R 0.19 TCGA-A6-6781-01 16 426632 426632 C T TMEM8A Silent p.P272P 0.21 TCGA-A6-6781-01 16 4386971 4386971 G A GLIS2 Missense_Mutation p.A341T 0.26 tolerated(0.59) benign(0.006) TCGA-A6-6781-01 16 47495296 47495296 G A PHKB Missense_Mutation p.S12N 0.27 tolerated_low_confidence(0.11) benign(0) TCGA-A6-6781-01 16 53260306 53260307 - A CHD9 Frame_Shift_Ins p.Y645Ifs*11 0.20 TCGA-A6-6781-01 16 55363090 55363090 C T IRX6 Silent p.C400C 0.15 TCGA-A6-6781-01 16 55522534 55522534 C T MMP2 Silent p.S304S 0.24 TCGA-A6-6781-01 16 55880742 55880742 C T CES5A Silent p.T507T 0.33 TCGA-A6-6781-01 16 56388945 56388945 C T RP11-441F2.5 5'Flank 0.22 TCGA-A6-6781-01 16 56857661 56857661 G A NUP93 Missense_Mutation p.V233M 0.11 deleterious(0.01) probably_damaging(0.956) TCGA-A6-6781-01 16 57507886 57507886 C T DOK4 Missense_Mutation p.R222H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6781-01 16 58031051 58031051 G A ZNF319 Silent p.C373C 0.44 TCGA-A6-6781-01 16 58287930 58287930 G A CCDC113 Missense_Mutation p.R86Q 0.19 deleterious(0.03) benign(0.337) TCGA-A6-6781-01 16 58296428 58296428 T C CCDC113 Missense_Mutation p.V256A 0.16 deleterious(0.02) benign(0.222) TCGA-A6-6781-01 16 58581480 58581480 A T CNOT1 Missense_Mutation p.I1210N 0.29 deleterious(0) possibly_damaging(0.886) TCGA-A6-6781-01 16 58706103 58706103 C T SLC38A7 Missense_Mutation p.V310M 0.27 deleterious(0) possibly_damaging(0.867) TCGA-A6-6781-01 16 596833 596833 G A CAPN15 5'UTR 0.20 TCGA-A6-6781-01 16 598026 598026 C T CAPN15 Silent p.C396C 0.22 TCGA-A6-6781-01 16 65022245 65022245 C T CDH11 Missense_Mutation p.V272I 0.22 tolerated(0.59) benign(0.062) TCGA-A6-6781-01 16 66885450 66885451 - T CA7 Frame_Shift_Ins p.L150Ffs*58 0.27 TCGA-A6-6781-01 16 67132788 67132788 C T CBFB 3'UTR 0.30 TCGA-A6-6781-01 16 67424139 67424139 C T TPPP3 Missense_Mutation p.D157N 0.27 tolerated(1) benign(0) TCGA-A6-6781-01 16 67645314 67645338 AGACCCAGACTATCAGCCACCAGCC GACCCAGACTATCAGCCACCAGCCA CTCF Missense_Mutation p.DPDYQPPA194TQTISHQP 0.17 TCGA-A6-6781-01 16 67645338 67645339 - A CTCF Frame_Shift_Ins p.T204Nfs*26 0.11 TCGA-A6-6781-01 16 67679114 67679114 C T RLTPR 5'UTR 0.19 TCGA-A6-6781-01 16 677518 677518 G - RAB40C Frame_Shift_Del p.G249Afs*80 0.16 TCGA-A6-6781-01 16 67973789 67973789 G A LCAT 3'UTR 0.24 TCGA-A6-6781-01 16 68014324 68014324 C T DPEP3 Missense_Mutation p.R12H 0.21 deleterious_low_confidence(0) benign(0.238) TCGA-A6-6781-01 16 69972993 69972993 C T WWP2 Missense_Mutation p.R803C 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 16 70305813 70305813 G A AARS Missense_Mutation p.T181M 0.16 deleterious(0.01) probably_damaging(1) TCGA-A6-6781-01 16 70508837 70508837 G A FUK Missense_Mutation p.R767Q 0.20 tolerated(0.78) benign(0.002) TCGA-A6-6781-01 16 70551564 70551564 C T COG4 Missense_Mutation p.V112M 0.37 deleterious(0) possibly_damaging(0.894) TCGA-A6-6781-01 16 71674477 71674477 G A MARVELD3 Silent p.T260T 0.31 TCGA-A6-6781-01 16 72992892 72992892 C T ZFHX3 Missense_Mutation p.A385T 0.31 benign(0.048) TCGA-A6-6781-01 16 72993737 72993737 C T ZFHX3 Missense_Mutation p.R103H 0.22 possibly_damaging(0.749) TCGA-A6-6781-01 16 74446115 74446115 G A CLEC18B Missense_Mutation p.R272W 0.08 deleterious(0) possibly_damaging(0.88) TCGA-A6-6781-01 16 74455195 74455195 C T CLEC18B 5'UTR 0.13 TCGA-A6-6781-01 16 74950097 74950097 G A WDR59 Missense_Mutation p.P343S 0.19 tolerated(0.35) benign(0.001) TCGA-A6-6781-01 16 75513666 75513666 G T CHST6 Missense_Mutation p.L21I 0.24 tolerated(0.31) benign(0.003) TCGA-A6-6781-01 16 77759353 77759354 - C NUDT7 Frame_Shift_Ins p.R22Pfs*6 0.20 TCGA-A6-6781-01 16 81213331 81213331 G T PKD1L2 Missense_Mutation p.L42I 0.12 deleterious(0.01) probably_damaging(0.978) TCGA-A6-6781-01 16 815778 815778 C T MSLN Missense_Mutation p.R295W 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-A6-6781-01 16 82101843 82101843 G A HSD17B2 Missense_Mutation p.G112R 0.29 deleterious(0) probably_damaging(0.911) TCGA-A6-6781-01 16 837433 837433 A G RPUSD1 Missense_Mutation p.V76A 0.17 deleterious(0) probably_damaging(0.983) TCGA-A6-6781-01 16 83940640 83940640 G A MLYCD Missense_Mutation p.G193R 0.21 deleterious(0) probably_damaging(0.987) TCGA-A6-6781-01 16 84793821 84793821 C A USP10 Silent p.A498A 0.07 TCGA-A6-6781-01 16 85111191 85111191 C T KIAA0513 Silent p.F245F 0.16 TCGA-A6-6781-01 16 85698705 85698705 C T GSE1 Missense_Mutation p.P910L 0.24 deleterious(0.02) possibly_damaging(0.769) TCGA-A6-6781-01 16 85704643 85704643 G A GSE1 Missense_Mutation p.R1153Q 0.24 tolerated(0.06) benign(0.339) TCGA-A6-6781-01 16 863335 863335 C T PRR25 Missense_Mutation p.A228V 0.19 deleterious_low_confidence(0.03) benign(0.386) TCGA-A6-6781-01 16 86612679 86612679 C T FOXL1 Missense_Mutation p.P117L 0.16 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 16 87368970 87368970 G A FBXO31 Silent p.H312H 0.19 TCGA-A6-6781-01 16 87451172 87451172 C T ZCCHC14 Missense_Mutation p.S289N 0.23 tolerated(0.16) benign(0.006) TCGA-A6-6781-01 16 87451245 87451245 C T ZCCHC14 Missense_Mutation p.A265T 0.23 tolerated(1) benign(0.003) TCGA-A6-6781-01 16 87743084 87743084 G - KLHDC4 Frame_Shift_Del p.R412Gfs*28 0.32 TCGA-A6-6781-01 16 87795634 87795634 C T KLHDC4 Missense_Mutation p.A38T 0.26 tolerated(0.26) possibly_damaging(0.574) TCGA-A6-6781-01 16 88503813 88503813 C - ZNF469 Frame_Shift_Del p.D3286Tfs*124 0.22 TCGA-A6-6781-01 16 88644009 88644009 G A ZC3H18 Missense_Mutation p.E160K 0.22 tolerated_low_confidence(0.17) unknown(0) TCGA-A6-6781-01 16 88677932 88677932 C T ZC3H18 Missense_Mutation p.P488L 0.20 deleterious_low_confidence(0.05) unknown(0) TCGA-A6-6781-01 16 88718950 88718950 G A MVD Missense_Mutation p.P396S 0.25 deleterious(0) possibly_damaging(0.777) TCGA-A6-6781-01 16 88788314 88788314 C T PIEZO1 Missense_Mutation p.G1706S 0.24 deleterious(0.03) benign(0.001) TCGA-A6-6781-01 16 88952507 88952507 C T CBFA2T3 Missense_Mutation p.R252H 0.15 deleterious(0.01) benign(0.404) TCGA-A6-6781-01 16 8900239 8900239 G A PMM2 Missense_Mutation p.A108T 0.28 deleterious(0) benign(0.346) TCGA-A6-6781-01 16 89351107 89351107 C T ANKRD11 Missense_Mutation p.A615T 0.30 benign(0) TCGA-A6-6781-01 16 8952236 8952236 G A CARHSP1 Silent p.G84G 0.21 TCGA-A6-6781-01 16 8953043 8953043 G A CARHSP1 Missense_Mutation p.T48M 0.22 deleterious(0.03) possibly_damaging(0.676) TCGA-A6-6781-01 17 10243663 10243663 G A MYH13 Silent p.T650T 0.20 TCGA-A6-6781-01 17 10535948 10535948 C T MYH3 Missense_Mutation p.A1601T 0.43 tolerated(0.48) benign(0.027) TCGA-A6-6781-01 17 11145349 11145349 C T SHISA6 Missense_Mutation p.R204C 0.19 deleterious(0) probably_damaging(0.992) TCGA-A6-6781-01 17 11461398 11461398 C T SHISA6 Missense_Mutation p.T478M 0.17 tolerated(0.06) benign(0.051) TCGA-A6-6781-01 17 11584066 11584066 A - DNAH9 Frame_Shift_Del p.K1203Rfs*6 0.20 TCGA-A6-6781-01 17 12656041 12656041 C - MYOCD Frame_Shift_Del p.S481Pfs*18 0.19 TCGA-A6-6781-01 17 12852558 12852558 C T ARHGAP44 Silent p.H321H 0.17 TCGA-A6-6781-01 17 13504517 13504517 C - HS3ST3A1 5'UTR 0.20 TCGA-A6-6781-01 17 1370780 1370780 T C MYO1C Missense_Mutation p.Q1020R 0.12 tolerated(0.1) possibly_damaging(0.86) TCGA-A6-6781-01 17 1538677 1538677 G A SCARF1 Missense_Mutation p.A623V 0.22 tolerated(0.08) benign(0.057) TCGA-A6-6781-01 17 1553124 1553124 C - RILP 5'UTR 0.19 TCGA-A6-6781-01 17 1563231 1563231 C T PRPF8 Missense_Mutation p.R1617Q 0.21 tolerated(0.1) probably_damaging(0.999) TCGA-A6-6781-01 17 1576726 1576726 G A PRPF8 Silent p.C1194C 0.32 TCGA-A6-6781-01 17 15960942 15960942 A G NCOR1 Missense_Mutation p.V2093A 0.30 benign(0.031) TCGA-A6-6781-01 17 16075130 16075130 G A NCOR1 Missense_Mutation p.A141V 0.20 benign(0.001) TCGA-A6-6781-01 17 16456065 16456065 C T ZNF287 Missense_Mutation p.R464H 0.17 tolerated(0.06) probably_damaging(0.985) TCGA-A6-6781-01 17 18023480 18023480 G A MYO15A Missense_Mutation p.A456T 0.25 possibly_damaging(0.499) TCGA-A6-6781-01 17 18029748 18029748 C T MYO15A Missense_Mutation p.R1282W 0.19 unknown(0) TCGA-A6-6781-01 17 18060317 18060317 C T MYO15A Missense_Mutation p.A2884V 0.20 unknown(0) TCGA-A6-6781-01 17 18135989 18135989 C T LLGL1 Missense_Mutation p.R89C 0.28 deleterious(0.01) benign(0.049) TCGA-A6-6781-01 17 18167078 18167078 C T MIEF2 Missense_Mutation p.P133L 0.22 tolerated(0.27) benign(0.063) TCGA-A6-6781-01 17 18188724 18188724 C T TOP3A Missense_Mutation p.E570K 0.23 deleterious(0.01) possibly_damaging(0.794) TCGA-A6-6781-01 17 18232670 18232670 G A SHMT1 Missense_Mutation p.R402W 0.26 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 17 18243507 18243507 C T SHMT1 Missense_Mutation p.G222R 0.17 deleterious(0.01) probably_damaging(0.931) TCGA-A6-6781-01 17 18647481 18647481 C T FBXW10 5'UTR 0.17 TCGA-A6-6781-01 17 2276699 2276699 G A SGSM2 Silent p.Q664Q 0.22 TCGA-A6-6781-01 17 2604765 2604765 G T CLUH Missense_Mutation p.P227Q 0.17 deleterious(0) probably_damaging(0.982) TCGA-A6-6781-01 17 2605347 2605347 C T CLUH Silent p.P122P 0.26 TCGA-A6-6781-01 17 26694478 26694478 C T VTN Missense_Mutation p.R450H 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-A6-6781-01 17 27042721 27042721 C A RAB34 Missense_Mutation p.W163L 0.23 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 17 27085677 27085677 G A FAM222B Missense_Mutation p.P434S 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-A6-6781-01 17 27233454 27233454 C T PHF12 Missense_Mutation p.R921Q 0.26 tolerated(0.51) benign(0.003) TCGA-A6-6781-01 17 27241000 27241000 G A PHF12 Missense_Mutation p.A397V 0.26 tolerated(0.12) benign(0.255) TCGA-A6-6781-01 17 27899641 27899641 G A TP53I13 Missense_Mutation p.R332Q 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-A6-6781-01 17 28400913 28400914 - A EFCAB5 Intron 0.36 TCGA-A6-6781-01 17 28444190 28444190 C A NSRP1 Intron 0.25 TCGA-A6-6781-01 17 28511927 28511927 G A NSRP1 Silent p.T304T 0.23 TCGA-A6-6781-01 17 29096937 29096937 G - SUZ12P RNA 0.09 TCGA-A6-6781-01 17 29119533 29119533 C T CRLF3 Missense_Mutation p.R295Q 0.26 deleterious(0.03) benign(0.017) TCGA-A6-6781-01 17 29233268 29233268 G - TEFM 5'UTR 0.18 TCGA-A6-6781-01 17 29559779 29559779 C T NF1 Nonsense_Mutation p.Q1126* 0.17 TCGA-A6-6781-01 17 29708903 29708903 C T NF1 3'Flank 0.07 TCGA-A6-6781-01 17 30264357 30264357 T C SUZ12 Missense_Mutation p.V31A 0.18 tolerated_low_confidence(0.09) unknown(0) TCGA-A6-6781-01 17 30264362 30264362 G A SUZ12 Missense_Mutation p.A33T 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-A6-6781-01 17 30323851 30323851 A G SUZ12 Missense_Mutation p.E610G 0.22 deleterious(0) probably_damaging(0.913) TCGA-A6-6781-01 17 33310377 33310377 G A LIG3 Missense_Mutation p.R118Q 0.18 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 17 33331361 33331361 A G LIG3 Missense_Mutation p.R956G 0.23 deleterious(0.01) benign(0.13) TCGA-A6-6781-01 17 33469249 33469249 C - NLE1 Intron 0.18 TCGA-A6-6781-01 17 33495292 33495292 C T UNC45B Missense_Mutation p.A455V 0.21 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 17 33977570 33977570 C T AP2B1 Nonsense_Mutation p.R520* 0.26 TCGA-A6-6781-01 17 34073222 34073222 C T GAS2L2 Missense_Mutation p.A432T 0.22 tolerated(0.36) benign(0.007) TCGA-A6-6781-01 17 34151132 34151132 G A TAF15 Missense_Mutation p.G179R 0.29 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-A6-6781-01 17 34257711 34257711 A - RDM1 Frame_Shift_Del p.F7Lfs*12 0.23 TCGA-A6-6781-01 17 3563881 3563881 G A CTNS Intron 0.15 TCGA-A6-6781-01 17 35896200 35896200 G A SYNRG Missense_Mutation p.R1183C 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 17 36628140 36628140 G A ARHGAP23 Missense_Mutation p.A671T 0.17 tolerated(0.06) benign(0.05) TCGA-A6-6781-01 17 36636045 36636045 G - ARHGAP23 Frame_Shift_Del p.G852Afs*70 0.13 TCGA-A6-6781-01 17 36868998 36868998 C - MLLT6 Frame_Shift_Del p.S261Afs*48 0.24 TCGA-A6-6781-01 17 36889595 36889595 G T CISD3 Nonsense_Mutation p.E91* 0.26 TCGA-A6-6781-01 17 37370512 37370512 G A STAC2 Silent p.P305P 0.22 TCGA-A6-6781-01 17 3765421 3765422 - G CAMKK1 3'Flank 0.26 TCGA-A6-6781-01 17 37826033 37826033 G - PNMT Frame_Shift_Del p.A120Pfs*32 0.24 TCGA-A6-6781-01 17 38511518 38511518 G A RARA Missense_Mutation p.R339H 0.23 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 17 38859781 38859781 C - KRT24 Frame_Shift_Del p.S56Lfs*18 0.24 TCGA-A6-6781-01 17 38911345 38911345 C - KRT25 Frame_Shift_Del p.G60Efs*10 0.19 TCGA-A6-6781-01 17 3910024 3910024 G A ZZEF1 3'UTR 0.31 TCGA-A6-6781-01 17 39471817 39471817 C T KRTAP17-1 Missense_Mutation p.C29Y 0.24 unknown(0) TCGA-A6-6781-01 17 39577674 39577674 G A KRT37 Missense_Mutation p.R396W 0.30 tolerated(0.07) benign(0.196) TCGA-A6-6781-01 17 39637243 39637243 G T KRT35 Missense_Mutation p.S36Y 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-A6-6781-01 17 39768744 39768744 C - KRT16 Frame_Shift_Del p.G66Afs*54 0.30 TCGA-A6-6781-01 17 39888591 39888592 CT - HAP1 Frame_Shift_Del p.R202Gfs*49 0.27 TCGA-A6-6781-01 17 40282495 40282495 C T RAB5C Missense_Mutation p.R42Q 0.26 tolerated_low_confidence(0.13) benign(0.001) TCGA-A6-6781-01 17 40453357 40453357 G A STAT5A Missense_Mutation p.V352I 0.09 tolerated(0.12) possibly_damaging(0.64) TCGA-A6-6781-01 17 40843957 40843957 G - CNTNAP1 Frame_Shift_Del p.G828Afs*57 0.18 TCGA-A6-6781-01 17 4139122 4139122 G A ANKFY1 Silent p.R131R 0.19 TCGA-A6-6781-01 17 42030359 42030359 G A PYY Intron 0.25 TCGA-A6-6781-01 17 42433390 42433390 G T FAM171A2 Silent p.L277L 0.26 TCGA-A6-6781-01 17 42475919 42475919 C T GPATCH8 Missense_Mutation p.E1176K 0.19 deleterious(0.05) unknown(0) TCGA-A6-6781-01 17 42636320 42636320 G A FZD2 Missense_Mutation p.V422M 0.21 deleterious(0.03) possibly_damaging(0.7) TCGA-A6-6781-01 17 43473411 43473413 AAG - ARHGAP27 In_Frame_Del p.F434del 0.23 TCGA-A6-6781-01 17 43473475 43473475 G A ARHGAP27 Missense_Mutation p.L413F 0.26 deleterious(0) probably_damaging(0.989) TCGA-A6-6781-01 17 43531274 43531274 G - PLEKHM1 Frame_Shift_Del p.E649Rfs*62 0.21 TCGA-A6-6781-01 17 43531402 43531402 G A PLEKHM1 Missense_Mutation p.R606C 0.18 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 17 44127980 44127980 C T KANSL1 Missense_Mutation p.E647K 0.26 deleterious(0.02) benign(0.284) TCGA-A6-6781-01 17 44632944 44632946 AGG - LRRC37A2 Missense_Mutation 0.18 TCGA-A6-6781-01 17 4575445 4575445 T C PELP1 Silent p.E947E 0.22 TCGA-A6-6781-01 17 45822194 45822194 C A TBX21 Missense_Mutation p.P357H 0.21 deleterious(0) possibly_damaging(0.65) TCGA-A6-6781-01 17 46056255 46056255 G A CDK5RAP3 Missense_Mutation p.R350Q 0.26 deleterious(0) probably_damaging(0.918) TCGA-A6-6781-01 17 46247980 46247980 G A SKAP1 Nonsense_Mutation p.R290* 0.17 TCGA-A6-6781-01 17 46607735 46607735 G T HOXB1 Silent p.R178R 0.23 TCGA-A6-6781-01 17 46654094 46654094 C T HOXB4 Missense_Mutation p.R249H 0.13 tolerated_low_confidence(0.15) unknown(0) TCGA-A6-6781-01 17 47014447 47014447 T C SNF8 Missense_Mutation p.D95G 0.24 deleterious(0) probably_damaging(0.98) TCGA-A6-6781-01 17 47119661 47119661 C T IGF2BP1 Silent p.I333I 0.26 TCGA-A6-6781-01 17 48172836 48172836 C A PDK2 Missense_Mutation p.L13M 0.22 tolerated(0.09) benign(0.016) TCGA-A6-6781-01 17 48245851 48245851 G A SGCA Missense_Mutation p.G168R 0.21 tolerated(0.09) possibly_damaging(0.613) TCGA-A6-6781-01 17 48266141 48266141 C T COL1A1 Missense_Mutation p.E1021K 0.21 unknown(0) TCGA-A6-6781-01 17 48271808 48271808 C A COL1A1 Missense_Mutation p.G506C 0.24 unknown(0) TCGA-A6-6781-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.36 TCGA-A6-6781-01 17 48627947 48627947 C T SPATA20 Silent p.Y383Y 0.25 TCGA-A6-6781-01 17 48647155 48647155 C T CACNA1G Missense_Mutation p.R193W 0.41 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 17 48649313 48649313 G A CACNA1G Missense_Mutation p.V221I 0.19 deleterious(0.02) probably_damaging(0.963) TCGA-A6-6781-01 17 48734098 48734098 G A ABCC3 Silent p.A86A 0.15 TCGA-A6-6781-01 17 5072277 5072277 G A USP6 Silent p.S1148S 0.21 TCGA-A6-6781-01 17 51901353 51901353 C T KIF2B Missense_Mutation p.T320M 0.07 deleterious(0) benign(0.339) TCGA-A6-6781-01 17 5353630 5353630 G A DHX33 Missense_Mutation p.R541W 0.22 deleterious(0) probably_damaging(0.939) TCGA-A6-6781-01 17 5378050 5378050 C T DERL2 Missense_Mutation p.R225Q 0.25 tolerated(0.35) benign(0.003) TCGA-A6-6781-01 17 559178 559178 G A VPS53 Missense_Mutation p.R130C 0.27 deleterious(0.03) possibly_damaging(0.849) TCGA-A6-6781-01 17 56352938 56352938 G A MPO Nonsense_Mutation p.Q444* 0.20 TCGA-A6-6781-01 17 56400051 56400051 C T BZRAP1 Silent p.L427L 0.15 TCGA-A6-6781-01 17 56429553 56429553 G T SUPT4H1 5'UTR 0.11 TCGA-A6-6781-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.20 TCGA-A6-6781-01 17 56573371 56573371 C T MTMR4 Missense_Mutation p.R711Q 0.23 tolerated_low_confidence(0.75) benign(0) TCGA-A6-6781-01 17 57952010 57952010 C T TUBD1 Missense_Mutation p.R275H 0.20 tolerated(0.17) benign(0.135) TCGA-A6-6781-01 17 59667795 59667795 G A NACA2 3'UTR 0.22 TCGA-A6-6781-01 17 59853805 59853805 T G BRIP1 Missense_Mutation p.Q685P 0.23 deleterious(0) probably_damaging(0.956) TCGA-A6-6781-01 17 60033089 60033089 C T MED13 Missense_Mutation p.A1912T 0.20 deleterious(0.01) possibly_damaging(0.616) TCGA-A6-6781-01 17 60526208 60526208 C T METTL2A 3'UTR 0.19 TCGA-A6-6781-01 17 61497899 61497899 C T TANC2 Missense_Mutation p.P1519L 0.19 tolerated_low_confidence(0.13) benign(0.031) TCGA-A6-6781-01 17 61560412 61560412 A - ACE Frame_Shift_Del p.M457Wfs*68 0.31 TCGA-A6-6781-01 17 61914927 61914927 G - SMARCD2 Frame_Shift_Del p.P92Lfs*20 0.26 TCGA-A6-6781-01 17 61972278 61972278 T C CSH1 3'UTR 0.20 TCGA-A6-6781-01 17 61972279 61972279 G A CSH1 3'UTR 0.20 TCGA-A6-6781-01 17 61987532 61987532 A G CSHL1 Missense_Mutation p.M154T 0.07 tolerated(1) benign(0) TCGA-A6-6781-01 17 62007156 62007156 C T CD79B Missense_Mutation p.V176M 0.38 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 17 62502314 62502314 G A DDX5 5'UTR 0.33 TCGA-A6-6781-01 17 62504794 62504794 T - CEP95 Frame_Shift_Del p.F36Lfs*17 0.19 TCGA-A6-6781-01 17 64881136 64881136 C T CACNG5 Missense_Mutation p.R203W 0.21 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 17 66366597 66366597 C A ARSG Missense_Mutation p.P305Q 0.24 deleterious(0) possibly_damaging(0.75) TCGA-A6-6781-01 17 66539825 66539827 AGA - FAM20A In_Frame_Del p.F252del 0.21 TCGA-A6-6781-01 17 67016639 67016639 G A ABCA9 Silent p.H830H 0.22 TCGA-A6-6781-01 17 67515570 67515570 G T MAP2K6 Silent p.R121R 0.13 TCGA-A6-6781-01 17 691271 691271 C A RNMTL1 Missense_Mutation p.P209H 0.16 deleterious(0) probably_damaging(0.974) TCGA-A6-6781-01 17 70645343 70645343 G A SLC39A11 Nonsense_Mutation p.R253* 0.25 TCGA-A6-6781-01 17 71165610 71165610 T C SSTR2 Missense_Mutation p.F51S 0.12 tolerated(0.42) benign(0.008) TCGA-A6-6781-01 17 71257863 71257863 C - CPSF4L Frame_Shift_Del p.G32Afs*84 0.11 TCGA-A6-6781-01 17 71390369 71390369 G A SDK2 Silent p.N1229N 0.11 TCGA-A6-6781-01 17 71390452 71390452 C T SDK2 Missense_Mutation p.G1202S 0.12 tolerated(0.14) probably_damaging(1) TCGA-A6-6781-01 17 7145727 7145727 G A GABARAP 5'UTR 0.32 TCGA-A6-6781-01 17 7210436 7210436 T C EIF5A Splice_Site p.X23_splice 0.28 TCGA-A6-6781-01 17 72295986 72295986 C T DNAI2 Missense_Mutation p.T285M 0.39 deleterious(0) probably_damaging(0.984) TCGA-A6-6781-01 17 72443067 72443067 G A GPRC5C Missense_Mutation p.R454Q 0.24 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-A6-6781-01 17 72588263 72588263 G A C17orf77 Silent p.P26P 0.22 TCGA-A6-6781-01 17 72926419 72926419 C T OTOP2 Missense_Mutation p.T230M 0.17 deleterious(0.04) benign(0.327) TCGA-A6-6781-01 17 72958047 72958047 C T HID1 Missense_Mutation p.E217K 0.21 tolerated(0.09) possibly_damaging(0.746) TCGA-A6-6781-01 17 7323955 7323955 C T SPEM1 Nonsense_Mutation p.R52* 0.21 TCGA-A6-6781-01 17 73274387 73274387 C - SLC25A19 Frame_Shift_Del p.T164Pfs*19 0.22 TCGA-A6-6781-01 17 7330497 7330497 G A C17orf74 Missense_Mutation p.R396H 0.27 tolerated(1) benign(0.154) TCGA-A6-6781-01 17 73499971 73499971 C T CASKIN2 Missense_Mutation p.G514S 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 17 73518239 73518239 C T TSEN54 Silent p.A359A 0.31 TCGA-A6-6781-01 17 73808347 73808347 C T UNK Missense_Mutation p.R157C 0.20 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 17 73911210 73911210 C T FBF1 Missense_Mutation p.R824Q 0.29 tolerated(0.05) benign(0.258) TCGA-A6-6781-01 17 74625750 74625750 G T ST6GALNAC1 Missense_Mutation p.L59M 0.24 probably_damaging(0.915) TCGA-A6-6781-01 17 7492896 7492896 C A SOX15 Missense_Mutation p.E33D 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.633) TCGA-A6-6781-01 17 7495631 7495631 G A FXR2 Missense_Mutation p.R623C 0.09 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-A6-6781-01 17 75484879 75484879 C T SEPT9 Missense_Mutation p.R399C 0.26 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 17 76121956 76121956 C T TMC6 Missense_Mutation p.R94Q 0.23 deleterious(0.03) probably_damaging(0.942) TCGA-A6-6781-01 17 76354896 76354896 C T SOCS3 Missense_Mutation p.R94H 0.23 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 17 76420228 76420228 C T DNAH17 Missense_Mutation p.R4406H 0.17 probably_damaging(0.982) TCGA-A6-6781-01 17 76445502 76445502 C T DNAH17 Silent p.T3721T 0.22 TCGA-A6-6781-01 17 76492001 76492001 G A DNAH17 Silent p.Y1939Y 0.20 TCGA-A6-6781-01 17 76498977 76498977 G A DNAH17 Silent p.Y1687Y 0.11 TCGA-A6-6781-01 17 7660451 7660451 G A DNAH2 Silent p.R649R 0.21 TCGA-A6-6781-01 17 7751760 7751760 C T KDM6B Silent p.G718G 0.15 TCGA-A6-6781-01 17 7762863 7762863 G C CYB5D1 Missense_Mutation p.S207T 0.23 tolerated(0.11) benign(0.002) TCGA-A6-6781-01 17 77709133 77709133 G A ENPP7 Missense_Mutation p.A231T 0.22 deleterious(0.04) benign(0.278) TCGA-A6-6781-01 17 77809471 77809471 G A CBX4 Missense_Mutation p.P74S 0.31 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 17 7793077 7793077 C T CHD3 Nonsense_Mutation p.R125* 0.21 TCGA-A6-6781-01 17 77987271 77987271 C T TBC1D16 Missense_Mutation p.G26S 0.30 tolerated(0.63) benign(0.023) TCGA-A6-6781-01 17 78078778 78078778 C T GAA Silent p.P131P 0.28 TCGA-A6-6781-01 17 78090814 78090814 G - GAA Frame_Shift_Del p.E748Rfs*16 0.19 TCGA-A6-6781-01 17 78320525 78320525 G A RNF213 Missense_Mutation p.R2797H 0.20 benign(0.091) TCGA-A6-6781-01 17 79180997 79180997 G A AZI1 Silent p.S105S 0.17 TCGA-A6-6781-01 17 79256060 79256060 G A SLC38A10 Missense_Mutation p.R144W 0.17 deleterious(0) probably_damaging(0.913) TCGA-A6-6781-01 17 79423462 79423462 C - RP11-1055B8.7 Frame_Shift_Del p.R1574Afs*107 0.19 TCGA-A6-6781-01 17 7948919 7948919 C T ALOX15B Missense_Mutation p.T372M 0.18 deleterious(0) possibly_damaging(0.788) TCGA-A6-6781-01 17 79654089 79654089 C T HGS Silent p.N85N 0.27 TCGA-A6-6781-01 17 79803019 79803019 C T P4HB Splice_Site p.X482_splice 0.26 TCGA-A6-6781-01 17 79899318 79899318 C T MYADML2 Silent p.A100A 0.31 TCGA-A6-6781-01 17 79988336 79988336 C T LRRC45 Silent p.L604L 0.20 TCGA-A6-6781-01 17 80426678 80426678 T G NARF Silent p.S97S 0.27 TCGA-A6-6781-01 17 80521377 80521377 C A FOXK2 Silent p.T189T 0.30 TCGA-A6-6781-01 17 80765494 80765494 G A TBCD Silent p.L366L 0.16 TCGA-A6-6781-01 17 80788688 80788688 G A ZNF750 Missense_Mutation p.A501V 0.17 tolerated(0.71) benign(0.003) TCGA-A6-6781-01 17 81006638 81006638 G A B3GNTL1 Silent p.N28N 0.25 TCGA-A6-6781-01 17 8660755 8660755 G A SPDYE4 Silent p.S55S 0.12 TCGA-A6-6781-01 17 8738737 8738737 C T PIK3R6 Silent p.A166A 0.22 TCGA-A6-6781-01 17 8740142 8740142 G A PIK3R6 Silent p.C119C 0.28 TCGA-A6-6781-01 17 8796916 8796916 G A PIK3R5 Missense_Mutation p.R157C 0.15 tolerated(0.23) benign(0.013) TCGA-A6-6781-01 17 9604922 9604922 C T USP43 Missense_Mutation p.P639L 0.23 deleterious(0.03) benign(0.302) TCGA-A6-6781-01 18 13087641 13087641 C T CEP192 Missense_Mutation p.R1997C 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-A6-6781-01 18 13095594 13095594 C T CEP192 Missense_Mutation p.A2116V 0.31 tolerated(0.22) benign(0.141) TCGA-A6-6781-01 18 18531082 18531082 A - ROCK1 3'UTR 0.18 TCGA-A6-6781-01 18 20889650 20889650 G A TMEM241 Missense_Mutation p.T275M 0.12 tolerated(0.11) benign(0.002) TCGA-A6-6781-01 18 21100231 21100231 C T C18orf8 Silent p.P305P 0.16 TCGA-A6-6781-01 18 21739766 21739766 T C CABYR Missense_Mutation p.V291A 0.14 tolerated(0.95) benign(0) TCGA-A6-6781-01 18 22807374 22807374 C T ZNF521 Missense_Mutation p.G170R 0.17 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 18 29045326 29045326 A - DSG3 Frame_Shift_Del p.T441Lfs*10 0.17 TCGA-A6-6781-01 18 29121219 29121219 C A DSG2 Missense_Mutation p.P648H 0.26 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 18 29125877 29125877 A - DSG2 Frame_Shift_Del p.I845* 0.21 TCGA-A6-6781-01 18 29175098 29175098 T C TTR Silent p.S72S 0.22 TCGA-A6-6781-01 18 29488331 29488331 T - TRAPPC8 Frame_Shift_Del p.K391Nfs*16 0.18 TCGA-A6-6781-01 18 31432898 31432898 C T NOL4 Missense_Mutation p.V609M 0.30 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 18 31538359 31538359 G A NOL4 Silent p.S360S 0.19 TCGA-A6-6781-01 18 31709978 31709978 C T NOL4 Missense_Mutation p.V91I 0.17 tolerated(0.23) probably_damaging(0.994) TCGA-A6-6781-01 18 32834231 32834231 C T ZSCAN30 Missense_Mutation p.R223Q 0.29 tolerated(0.99) benign(0) TCGA-A6-6781-01 18 32888086 32888090 AAAAC - ZNF271 RNA 0.21 TCGA-A6-6781-01 18 33778665 33778665 G A MOCOS Missense_Mutation p.S82N 0.17 deleterious(0) probably_damaging(0.982) TCGA-A6-6781-01 18 34376953 34376953 C T TPGS2 Missense_Mutation p.D240N 0.18 tolerated(0.19) benign(0.013) TCGA-A6-6781-01 18 34854356 34854356 C T CELF4 Missense_Mutation p.R240Q 0.24 deleterious(0) probably_damaging(0.946) TCGA-A6-6781-01 18 44036561 44036561 C T RNF165 Nonsense_Mutation p.R335* 0.33 TCGA-A6-6781-01 18 45566582 45566582 T C ZBTB7C Silent p.P299P 0.31 TCGA-A6-6781-01 18 46570287 46570287 T C DYM 3'UTR 0.23 TCGA-A6-6781-01 18 47369671 47369671 G A MYO5B Silent p.D1517D 0.26 TCGA-A6-6781-01 18 48248307 48248307 G T MAPK4 Splice_Site p.X231_splice 0.17 TCGA-A6-6781-01 18 54358513 54358513 G A WDR7 Missense_Mutation p.G262R 0.27 deleterious(0) probably_damaging(0.996) TCGA-A6-6781-01 18 56149008 56149008 C T ALPK2 3'UTR 0.21 TCGA-A6-6781-01 18 56601736 56601736 G A ZNF532 Silent p.Q806Q 0.17 TCGA-A6-6781-01 18 5891618 5891618 C T TMEM200C Missense_Mutation p.V149M 0.15 tolerated(0.07) probably_damaging(0.993) TCGA-A6-6781-01 18 60562356 60562356 C T PHLPP1 Nonsense_Mutation p.R727* 0.30 TCGA-A6-6781-01 18 66348254 66348254 G A TMX3 Silent p.V333V 0.20 TCGA-A6-6781-01 18 6873513 6873513 T - ARHGAP28 Frame_Shift_Del p.F196Lfs*8 0.18 TCGA-A6-6781-01 18 72913423 72913423 T - ZADH2 Frame_Shift_Del p.N361Tfs*6 0.24 TCGA-A6-6781-01 18 74672760 74672760 A G ZNF236 Missense_Mutation p.T1788A 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6781-01 18 76757345 76757345 T C SALL3 3'Flank 0.27 TCGA-A6-6781-01 18 76886335 76886335 G T ATP9B Missense_Mutation p.K209N 0.16 tolerated(0.18) possibly_damaging(0.776) TCGA-A6-6781-01 18 77171121 77171121 G A NFATC1 Silent p.S269S 0.14 TCGA-A6-6781-01 18 77474884 77474884 A G CTDP1 Missense_Mutation p.D475G 0.11 tolerated(0.05) benign(0.026) TCGA-A6-6781-01 18 77659160 77659160 G A KCNG2 Missense_Mutation p.A249T 0.21 tolerated(0.72) benign(0) TCGA-A6-6781-01 18 77917731 77917731 G T PARD6G Missense_Mutation p.L352M 0.22 tolerated_low_confidence(0.12) benign(0.021) TCGA-A6-6781-01 18 8378283 8378283 C T PTPRM Silent p.H1161H 0.24 TCGA-A6-6781-01 18 8406111 8406111 A C PTPRM Missense_Mutation p.Q1450P 0.26 deleterious(0) possibly_damaging(0.548) TCGA-A6-6781-01 18 9937030 9937030 C T VAPA Silent p.C128C 0.20 TCGA-A6-6781-01 19 1010634 1010634 C T TMEM259 Silent p.A526A 0.32 TCGA-A6-6781-01 19 10227497 10227497 C T EIF3G Missense_Mutation p.E192K 0.36 tolerated(0.65) benign(0.001) TCGA-A6-6781-01 19 1067405 1067405 A G HMHA1 Intron 0.24 TCGA-A6-6781-01 19 1108237 1108237 G A SBNO2 Silent p.G1361G 0.27 TCGA-A6-6781-01 19 11132437 11132437 C T SMARCA4 Missense_Mutation p.R885C 0.19 probably_damaging(0.998) TCGA-A6-6781-01 19 1123960 1123960 G A SBNO2 Missense_Mutation p.P168L 0.18 deleterious_low_confidence(0.02) benign(0.035) TCGA-A6-6781-01 19 11512920 11512920 C - RGL3 Frame_Shift_Del p.D445Ifs*30 0.22 TCGA-A6-6781-01 19 11526630 11526630 G A RGL3 Missense_Mutation p.P207L 0.13 tolerated(0.3) benign(0.004) TCGA-A6-6781-01 19 11565457 11565457 C T ELAVL3 Missense_Mutation p.V330M 0.23 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 19 11616318 11616318 C T ZNF653 Missense_Mutation p.R95Q 0.14 tolerated(0.33) benign(0.05) TCGA-A6-6781-01 19 11685844 11685844 G A ACP5 Missense_Mutation p.P320L 0.16 tolerated(0.06) probably_damaging(0.925) TCGA-A6-6781-01 19 11941475 11941475 C T ZNF440 Silent p.N58N 0.25 TCGA-A6-6781-01 19 1221314 1221314 C - STK11 Frame_Shift_Del p.P281Rfs*6 0.16 TCGA-A6-6781-01 19 12920928 12920928 G A RNASEH2A Missense_Mutation p.R152Q 0.07 deleterious(0.02) benign(0.009) TCGA-A6-6781-01 19 12976890 12976890 C T MAST1 Missense_Mutation p.S668L 0.19 deleterious(0) possibly_damaging(0.448) TCGA-A6-6781-01 19 12991895 12991895 T C DNASE2 Missense_Mutation p.Y53C 0.11 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 19 13044368 13044368 C T FARSA Missense_Mutation p.G48D 0.30 tolerated(0.2) benign(0.201) TCGA-A6-6781-01 19 13065136 13065138 CTT - GADD45GIP1 In_Frame_Del p.K185del 0.34 TCGA-A6-6781-01 19 13264187 13264187 G A IER2 Missense_Mutation p.A63T 0.24 tolerated(0.48) benign(0.002) TCGA-A6-6781-01 19 13870054 13870054 G A CCDC130 Missense_Mutation p.A181T 0.20 tolerated(0.22) probably_damaging(0.976) TCGA-A6-6781-01 19 13873647 13873647 C T CCDC130 Missense_Mutation p.P319L 0.24 tolerated_low_confidence(0.15) benign(0.01) TCGA-A6-6781-01 19 13882968 13882968 C - MRI1 Frame_Shift_Del p.H330Tfs*24 0.22 TCGA-A6-6781-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.34 TCGA-A6-6781-01 19 14501818 14501818 C T CD97 Silent p.C91C 0.27 TCGA-A6-6781-01 19 14516665 14516665 C T CD97 Missense_Mutation p.R579C 0.19 tolerated(0.05) probably_damaging(1) TCGA-A6-6781-01 19 14552224 14552224 C T PKN1 Silent p.H103H 0.26 TCGA-A6-6781-01 19 14581050 14581050 C T PKN1 Missense_Mutation p.T796M 0.20 deleterious(0.01) possibly_damaging(0.776) TCGA-A6-6781-01 19 1460264 1460264 G A APC2 Missense_Mutation p.R463H 0.23 probably_damaging(0.999) TCGA-A6-6781-01 19 1481916 1481916 G A PCSK4 Missense_Mutation p.R704C 0.21 deleterious(0.01) benign(0.003) TCGA-A6-6781-01 19 1487187 1487187 C T PCSK4 Missense_Mutation p.G270S 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 15289952 15289952 C T NOTCH3 Missense_Mutation p.R1201H 0.23 tolerated(0.24) benign(0.02) TCGA-A6-6781-01 19 15302975 15302975 C T NOTCH3 Missense_Mutation p.V159M 0.24 tolerated(0.07) benign(0.316) TCGA-A6-6781-01 19 15350023 15350023 G A BRD4 Missense_Mutation p.P1210L 0.20 possibly_damaging(0.726) TCGA-A6-6781-01 19 15355352 15355352 C T BRD4 Silent p.P757P 0.44 TCGA-A6-6781-01 19 15376438 15376438 G A BRD4 Silent p.G192G 0.28 TCGA-A6-6781-01 19 15536252 15536252 G A WIZ Missense_Mutation p.P470L 0.27 tolerated(0.12) benign(0.005) TCGA-A6-6781-01 19 15770101 15770101 G A CYP4F3 Missense_Mutation p.R490H 0.20 tolerated(0.07) benign(0.271) TCGA-A6-6781-01 19 15918460 15918460 G - OR10H1 Frame_Shift_Del p.L130Cfs*7 0.19 TCGA-A6-6781-01 19 16238325 16238325 C T RAB8A Missense_Mutation p.R135W 0.07 deleterious(0) probably_damaging(0.932) TCGA-A6-6781-01 19 16643537 16643537 G A CHERP Silent p.S182S 0.19 TCGA-A6-6781-01 19 16687536 16687536 G A MED26 Missense_Mutation p.R369W 0.17 tolerated(0.21) benign(0.007) TCGA-A6-6781-01 19 16918875 16918875 C T NWD1 Silent p.S1405S 0.24 TCGA-A6-6781-01 19 17122526 17122526 C A CPAMD8 Missense_Mutation p.W150C 0.24 tolerated(0.32) benign(0.012) TCGA-A6-6781-01 19 17322818 17322818 C - MYO9B 3'UTR 0.15 TCGA-A6-6781-01 19 17361127 17361127 G A USHBP1 Silent p.A673A 0.23 TCGA-A6-6781-01 19 17452647 17452647 T C GTPBP3 3'UTR 0.14 TCGA-A6-6781-01 19 17516315 17516315 G A BST2 Silent p.L24L 0.20 TCGA-A6-6781-01 19 17836951 17836951 C T MAP1S Missense_Mutation p.A253V 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-A6-6781-01 19 17845155 17845155 C T MAP1S Missense_Mutation p.A1033V 0.23 tolerated(0.06) possibly_damaging(0.536) TCGA-A6-6781-01 19 17889578 17889578 C T FCHO1 Silent p.S504S 0.29 TCGA-A6-6781-01 19 18047301 18047301 G A CCDC124 Silent p.A24A 0.26 TCGA-A6-6781-01 19 1817774 1817774 C T REXO1 Missense_Mutation p.G1008R 0.22 deleterious(0.03) benign(0.364) TCGA-A6-6781-01 19 18260381 18260381 C T MAST3 Missense_Mutation p.R1259C 0.16 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-A6-6781-01 19 1828553 1828553 C - REXO1 Frame_Shift_Del p.E79Rfs*81 0.24 TCGA-A6-6781-01 19 18546115 18546115 G A ISYNA1 Missense_Mutation p.A478V 0.21 deleterious(0.01) probably_damaging(0.952) TCGA-A6-6781-01 19 18557587 18557587 C T ELL Silent p.T501T 0.25 TCGA-A6-6781-01 19 18731290 18731290 G A TMEM59L Missense_Mutation p.A325T 0.29 tolerated(0.22) benign(0.003) TCGA-A6-6781-01 19 18778748 18778748 C T KLHL26 Nonsense_Mutation p.R181* 0.23 TCGA-A6-6781-01 19 18896305 18896305 C T COMP Intron 0.24 TCGA-A6-6781-01 19 18967072 18967072 G A UPF1 Missense_Mutation p.R596Q 0.32 deleterious(0.02) benign(0.133) TCGA-A6-6781-01 19 19011223 19011223 G A COPE Silent p.I257I 0.19 TCGA-A6-6781-01 19 19369541 19369541 C T HAPLN4 Missense_Mutation p.R203H 0.18 tolerated(0.06) probably_damaging(0.926) TCGA-A6-6781-01 19 19381859 19381859 G A TM6SF2 Silent p.G57G 0.21 TCGA-A6-6781-01 19 19625791 19625791 C T TSSK6 Missense_Mutation p.R149H 0.29 tolerated(0.3) benign(0.032) TCGA-A6-6781-01 19 19790943 19790943 G A ZNF101 Missense_Mutation p.R382Q 0.22 tolerated(0.49) benign(0.216) TCGA-A6-6781-01 19 20044855 20044855 T C ZNF93 Missense_Mutation p.M364T 0.15 tolerated(1) benign(0.001) TCGA-A6-6781-01 19 2109203 2109203 G A AP3D1 Silent p.D1118D 0.24 TCGA-A6-6781-01 19 21609716 21609717 - T ZNF493 3'UTR 0.17 TCGA-A6-6781-01 19 22375898 22375898 T C ZNF676 Missense_Mutation p.K17R 0.18 deleterious(0.01) benign(0.302) TCGA-A6-6781-01 19 2340089 2340089 G A SPPL2B RNA 0.28 TCGA-A6-6781-01 19 2343975 2343975 C T SPPL2B RNA 0.19 TCGA-A6-6781-01 19 2427677 2427677 C T TIMM13 5'UTR 0.27 TCGA-A6-6781-01 19 2733355 2733355 C T SLC39A3 Silent p.P113P 0.19 TCGA-A6-6781-01 19 30020811 30020811 G A VSTM2B Missense_Mutation p.R128H 0.29 deleterious(0) probably_damaging(0.986) TCGA-A6-6781-01 19 30164802 30164802 A C PLEKHF1 Missense_Mutation p.E19A 0.17 deleterious(0) probably_damaging(0.996) TCGA-A6-6781-01 19 30496565 30496565 G A URI1 Missense_Mutation p.G156D 0.18 tolerated(0.14) benign(0.029) TCGA-A6-6781-01 19 3121184 3121184 A G GNA11 3'UTR 0.23 TCGA-A6-6781-01 19 3163040 3163040 C T GNA15 3'UTR 0.24 TCGA-A6-6781-01 19 3179061 3179061 A G S1PR4 Missense_Mutation p.S91G 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-A6-6781-01 19 3206378 3206378 G A NCLN Missense_Mutation p.R485H 0.36 tolerated(0.15) benign(0.008) TCGA-A6-6781-01 19 3224848 3224848 C T CELF5 Silent p.D37D 0.21 TCGA-A6-6781-01 19 32945844 32945845 - A DPY19L3 Frame_Shift_Ins p.N331Kfs*9 0.17 TCGA-A6-6781-01 19 33370142 33370142 C T CEP89 Missense_Mutation p.V760I 0.19 tolerated(1) benign(0.001) TCGA-A6-6781-01 19 33698296 33698296 G A LRP3 Missense_Mutation p.G710S 0.35 tolerated_low_confidence(1) benign(0) TCGA-A6-6781-01 19 34985493 34985493 T - WTIP Frame_Shift_Del p.F346Lfs*45 0.18 TCGA-A6-6781-01 19 35842765 35842765 G A FFAR1 Missense_Mutation p.R104H 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 35996654 35996654 T G DMKN Missense_Mutation p.K367T 0.12 deleterious(0) unknown(0) TCGA-A6-6781-01 19 36003639 36003639 C A DMKN Missense_Mutation p.Q160H 0.17 tolerated(1) benign(0.061) TCGA-A6-6781-01 19 36304053 36304053 C T PRODH2 Missense_Mutation p.C44Y 0.20 tolerated_low_confidence(0.12) benign(0.384) TCGA-A6-6781-01 19 36352831 36352831 C T KIRREL2 Missense_Mutation p.S472L 0.12 deleterious(0) benign(0.004) TCGA-A6-6781-01 19 36435657 36435657 C T LRFN3 Silent p.I541I 0.08 TCGA-A6-6781-01 19 36574130 36574130 A C WDR62 Missense_Mutation p.S513R 0.23 tolerated(0.34) benign(0.029) TCGA-A6-6781-01 19 38125807 38125807 G A ZFP30 3'UTR 0.19 TCGA-A6-6781-01 19 38689132 38689132 C T SIPA1L3 Silent p.L1648L 0.18 TCGA-A6-6781-01 19 38818039 38818039 G T KCNK6 Missense_Mutation p.R313M 0.35 deleterious(0) probably_damaging(0.987) TCGA-A6-6781-01 19 38876289 38876289 G A GGN Missense_Mutation p.T538I 0.25 tolerated_low_confidence(0.27) possibly_damaging(0.491) TCGA-A6-6781-01 19 39292526 39292526 G A LGALS4 Missense_Mutation p.R284C 0.30 deleterious(0.04) probably_damaging(0.984) TCGA-A6-6781-01 19 39423263 39423263 C T MRPS12 Missense_Mutation p.R114C 0.11 tolerated(0.1) benign(0.063) TCGA-A6-6781-01 19 39590902 39590902 C T PAPL Missense_Mutation p.R181C 0.28 deleterious(0) probably_damaging(0.932) TCGA-A6-6781-01 19 39798846 39798846 G A LRFN1 Silent p.H581H 0.18 TCGA-A6-6781-01 19 40023094 40023094 G A EID2B Missense_Mutation p.R117C 0.21 deleterious(0.03) probably_damaging(0.968) TCGA-A6-6781-01 19 40374053 40374053 G A FCGBP Nonsense_Mutation p.Q4009* 0.09 TCGA-A6-6781-01 19 4047691 4047691 T - ZBTB7A 3'UTR 0.17 TCGA-A6-6781-01 19 40732510 40732510 C T CNTD2 Silent p.R13R 0.21 TCGA-A6-6781-01 19 40842077 40842077 G A C19orf47 Silent p.G91G 0.26 TCGA-A6-6781-01 19 40902790 40902790 C T PRX Missense_Mutation p.R490Q 0.20 tolerated(0.21) benign(0.417) TCGA-A6-6781-01 19 41012215 41012215 C T SPTBN4 Silent p.L580L 0.30 TCGA-A6-6781-01 19 41095063 41095063 G A SHKBP1 Missense_Mutation p.R523H 0.34 deleterious(0) probably_damaging(0.996) TCGA-A6-6781-01 19 41096736 41096737 - A SHKBP1 Frame_Shift_Ins p.S624Ifs*31 0.29 TCGA-A6-6781-01 19 41248315 41248315 G A C19orf54 3'UTR 0.30 TCGA-A6-6781-01 19 41442411 41442411 C A CYP2B7P RNA 0.15 TCGA-A6-6781-01 19 41515951 41515951 C T CYP2B6 Missense_Mutation p.T292M 0.24 deleterious(0.01) possibly_damaging(0.693) TCGA-A6-6781-01 19 41703746 41703746 C T CYP2S1 Missense_Mutation p.R136W 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6781-01 19 41704767 41704767 G A CYP2S1 Missense_Mutation p.D270N 0.15 deleterious(0) probably_damaging(0.96) TCGA-A6-6781-01 19 41765475 41765475 G A AXL Missense_Mutation p.R784Q 0.34 tolerated(0.05) benign(0.037) TCGA-A6-6781-01 19 41939304 41939304 G A ATP5SL Missense_Mutation p.R163C 0.31 tolerated(0.1) benign(0.045) TCGA-A6-6781-01 19 422187 422187 C T SHC2 Missense_Mutation p.G527R 0.25 deleterious(0.01) probably_damaging(1) TCGA-A6-6781-01 19 425211 425211 C T SHC2 Missense_Mutation p.V399M 0.28 deleterious(0.04) possibly_damaging(0.784) TCGA-A6-6781-01 19 42566746 42566746 C T GRIK5 Silent p.A134A 0.23 TCGA-A6-6781-01 19 42584655 42584655 C T ZNF574 Missense_Mutation p.R633C 0.23 deleterious(0) possibly_damaging(0.876) TCGA-A6-6781-01 19 42737442 42737442 A G GSK3A Missense_Mutation p.I333T 0.28 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 42795412 42795412 C T CIC Missense_Mutation p.T831M 0.26 probably_damaging(0.985) TCGA-A6-6781-01 19 42829158 42829158 G T TMEM145 3'UTR 0.17 TCGA-A6-6781-01 19 42839328 42839328 G A MEGF8 Missense_Mutation p.A234T 0.33 tolerated(0.1) possibly_damaging(0.819) TCGA-A6-6781-01 19 42863021 42863021 G A MEGF8 Missense_Mutation p.R1686Q 0.26 tolerated_low_confidence(0.71) benign(0) TCGA-A6-6781-01 19 4311959 4311959 G A FSD1 Missense_Mutation p.R204Q 0.36 tolerated(0.23) benign(0.298) TCGA-A6-6781-01 19 4318919 4318919 G A FSD1 Missense_Mutation p.R337H 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-A6-6781-01 19 4357272 4357272 G A MPND Missense_Mutation p.R340Q 0.16 deleterious(0.05) probably_damaging(0.93) TCGA-A6-6781-01 19 44005903 44005903 G A PHLDB3 Missense_Mutation p.R173C 0.13 tolerated(0.06) benign(0.004) TCGA-A6-6781-01 19 44223379 44223379 C T IRGC Silent p.Y223Y 0.26 TCGA-A6-6781-01 19 44242323 44242323 C T SMG9 Missense_Mutation p.R287H 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-A6-6781-01 19 4428731 4428731 G A CHAF1A Missense_Mutation p.R483H 0.22 deleterious(0) possibly_damaging(0.835) TCGA-A6-6781-01 19 4433096 4433096 G A CHAF1A Missense_Mutation p.G745S 0.17 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 44495749 44495749 T C ZNF155 Missense_Mutation p.L33P 0.23 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 44635821 44635821 C T ZNF225 Missense_Mutation p.R352C 0.21 tolerated(0.06) benign(0.009) TCGA-A6-6781-01 19 4504465 4504465 C T PLIN4 3'UTR 0.19 TCGA-A6-6781-01 19 45204640 45204640 C T CEACAM16 5'UTR 0.11 TCGA-A6-6781-01 19 45261569 45261569 G A BCL3 Missense_Mutation p.G320R 0.12 deleterious(0.02) possibly_damaging(0.894) TCGA-A6-6781-01 19 45495643 45495643 G A CLPTM1 Missense_Mutation p.G570S 0.22 deleterious(0) probably_damaging(0.931) TCGA-A6-6781-01 19 4550280 4550280 C T SEMA6B Missense_Mutation p.G376R 0.28 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 45848881 45848881 C T KLC3 Missense_Mutation p.R28W 0.13 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 19 46137646 46137646 G A EML2 Missense_Mutation p.A289V 0.24 tolerated(1) benign(0.001) TCGA-A6-6781-01 19 46269194 46269194 C T SIX5 Silent p.V595V 0.21 TCGA-A6-6781-01 19 46307942 46307942 T C RSPH6A Silent p.V407V 0.33 TCGA-A6-6781-01 19 46320215 46320215 C A SYMPK Missense_Mutation p.K1033N 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-A6-6781-01 19 46326703 46326703 C T SYMPK Missense_Mutation p.R876Q 0.13 deleterious(0) possibly_damaging(0.654) TCGA-A6-6781-01 19 46375409 46375409 C A FOXA3 Missense_Mutation p.P49H 0.21 deleterious(0.02) unknown(0) TCGA-A6-6781-01 19 46387697 46387698 - C IRF2BP1 Frame_Shift_Ins p.P446Afs*134 0.23 TCGA-A6-6781-01 19 4652136 4652136 G A TNFAIP8L1 Silent p.A85A 0.20 TCGA-A6-6781-01 19 46914695 46914695 G A CCDC8 Missense_Mutation p.A458V 0.24 benign(0.122) TCGA-A6-6781-01 19 47030218 47030218 G A PPP5D1 Missense_Mutation p.R67C 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-A6-6781-01 19 47242093 47242093 G A STRN4 Missense_Mutation p.T112M 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-A6-6781-01 19 47502620 47502620 A G ARHGAP35 Missense_Mutation p.K1366E 0.24 tolerated(0.61) benign(0.058) TCGA-A6-6781-01 19 48220062 48220062 G A EHD2 Missense_Mutation p.G65S 0.28 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 48618777 48618777 C T LIG1 3'UTR 0.30 TCGA-A6-6781-01 19 48878954 48878954 G T SYNGR4 Missense_Mutation p.G139V 0.16 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 49107058 49107058 G A FAM83E Missense_Mutation p.P290L 0.25 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 19 49207360 49207360 C T FUT2 3'UTR 0.31 TCGA-A6-6781-01 19 49216752 49216752 G - MAMSTR Frame_Shift_Del p.S341Pfs*39 0.21 TCGA-A6-6781-01 19 49254219 49254219 C T FUT1 Missense_Mutation p.G107D 0.26 deleterious(0) possibly_damaging(0.809) TCGA-A6-6781-01 19 4929469 4929469 C T MIR4747 5'Flank 0.23 TCGA-A6-6781-01 19 49316452 49316452 C T HSD17B14 Missense_Mutation p.A265T 0.20 tolerated_low_confidence(0.35) benign(0.001) TCGA-A6-6781-01 19 49351287 49351287 G A PLEKHA4 Missense_Mutation p.S479F 0.22 tolerated(0.06) possibly_damaging(0.482) TCGA-A6-6781-01 19 4941910 4941910 C T UHRF1 RNA 0.26 TCGA-A6-6781-01 19 49519472 49519472 C T LHB Silent p.P93P 0.22 TCGA-A6-6781-01 19 49611242 49611242 C T SNRNP70 Missense_Mutation p.R286W 0.21 deleterious(0) unknown(0) TCGA-A6-6781-01 19 498502 498502 C T MADCAM1 Missense_Mutation p.P115L 0.12 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 19 50195540 50195540 C T CPT1C Nonsense_Mutation p.R11* 0.23 TCGA-A6-6781-01 19 50338288 50338288 G A MED25 Missense_Mutation p.V510M 0.27 deleterious(0.03) probably_damaging(0.976) TCGA-A6-6781-01 19 50393251 50393251 C T IL4I1 Silent p.A482A 0.22 TCGA-A6-6781-01 19 50461924 50461924 C T SIGLEC11 Missense_Mutation p.V447I 0.22 tolerated(0.51) benign(0.012) TCGA-A6-6781-01 19 50713782 50713782 C T MYH14 Missense_Mutation p.R54C 0.19 deleterious(0) probably_damaging(0.921) TCGA-A6-6781-01 19 51052091 51052091 G A LRRC4B Missense_Mutation p.A2V 0.18 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-A6-6781-01 19 5131944 5131944 G A KDM4B Missense_Mutation p.R611Q 0.22 possibly_damaging(0.602) TCGA-A6-6781-01 19 51506360 51506360 C T KLK9 3'UTR 0.27 TCGA-A6-6781-01 19 51671614 51671614 C T CTD-3187F8.14 Intron 0.25 TCGA-A6-6781-01 19 5239009 5239009 G A PTPRS Silent p.Y590Y 0.19 TCGA-A6-6781-01 19 52468148 52468148 C T ZNF350 Missense_Mutation p.V520M 0.32 tolerated(0.09) possibly_damaging(0.718) TCGA-A6-6781-01 19 53794736 53794736 T - BIRC8 5'UTR 0.20 TCGA-A6-6781-01 19 54377726 54377726 G A MYADM Missense_Mutation p.A315T 0.18 tolerated(0.07) benign(0.033) TCGA-A6-6781-01 19 54378587 54378589 TAT - MYADM 3'UTR 0.21 TCGA-A6-6781-01 19 54664692 54664692 G A TMC4 Silent p.S638S 0.26 TCGA-A6-6781-01 19 54697347 54697347 G A TSEN34 3'UTR 0.29 TCGA-A6-6781-01 19 54725720 54725720 G T LILRB3 Missense_Mutation p.P213H 0.21 deleterious(0) probably_damaging(0.972) TCGA-A6-6781-01 19 55221989 55221989 C T AC098784.2 3'Flank 0.20 TCGA-A6-6781-01 19 55441868 55441868 G A NLRP7 Missense_Mutation p.R937C 0.13 tolerated(0.1) possibly_damaging(0.786) TCGA-A6-6781-01 19 55450732 55450732 C A NLRP7 Missense_Mutation p.E485D 0.13 tolerated(0.13) possibly_damaging(0.621) TCGA-A6-6781-01 19 55592698 55592704 GCGGGGC - EPS8L1 Frame_Shift_Del p.G206Afs*54 0.21 TCGA-A6-6781-01 19 55708686 55708686 C T PTPRH Missense_Mutation p.V597I 0.27 benign(0.053) TCGA-A6-6781-01 19 55824410 55824410 G A TMEM150B Silent p.H173H 0.27 TCGA-A6-6781-01 19 5590343 5590343 C - SAFB2 Frame_Shift_Del p.G824Afs*8 0.22 TCGA-A6-6781-01 19 56162765 56162765 G A CCDC106 Missense_Mutation p.E144K 0.23 tolerated(0.31) benign(0.162) TCGA-A6-6781-01 19 56329312 56329312 G A NLRP11 Missense_Mutation p.R77C 0.16 deleterious(0.04) possibly_damaging(0.761) TCGA-A6-6781-01 19 56423804 56423804 A - NLRP13 Frame_Shift_Del p.F460Sfs*10 0.17 TCGA-A6-6781-01 19 56467245 56467245 G A NLRP8 Silent p.P607P 0.15 TCGA-A6-6781-01 19 5667372 5667372 G - SAFB Frame_Shift_Del p.D825Tfs*19 0.20 TCGA-A6-6781-01 19 5678467 5678467 G A C19orf70 3'UTR 0.24 TCGA-A6-6781-01 19 58004336 58004336 A - ZNF419 Frame_Shift_Del p.R140Dfs*9 0.18 TCGA-A6-6781-01 19 58067538 58067538 T - ZNF550 Intron 0.17 TCGA-A6-6781-01 19 58452443 58452443 C T ZNF256 Missense_Mutation p.S578N 0.25 tolerated(0.27) benign(0.002) TCGA-A6-6781-01 19 58453319 58453319 C T ZNF256 Missense_Mutation p.R286Q 0.20 tolerated(1) benign(0.297) TCGA-A6-6781-01 19 58596166 58596166 G A ZSCAN18 Silent p.G529G 0.17 TCGA-A6-6781-01 19 58879468 58879468 C T ZNF837 Missense_Mutation p.R411H 0.21 deleterious(0.05) benign(0.151) TCGA-A6-6781-01 19 58880385 58880385 G A ZNF837 Silent p.P105P 0.16 TCGA-A6-6781-01 19 6381160 6381160 G A GTF2F1 Silent p.S355S 0.19 TCGA-A6-6781-01 19 7117046 7117046 C - INSR 3'UTR 0.18 TCGA-A6-6781-01 19 757830 757830 G A MISP Missense_Mutation p.R295Q 0.34 deleterious(0) probably_damaging(0.995) TCGA-A6-6781-01 19 7678023 7678023 C T CAMSAP3 Missense_Mutation p.R909W 0.31 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 19 7686172 7686172 G A XAB2 Silent p.R543R 0.32 TCGA-A6-6781-01 19 7975582 7975582 C T MAP2K7 Missense_Mutation p.T190M 0.33 tolerated(0.08) benign(0.067) TCGA-A6-6781-01 19 8553588 8553588 C T HNRNPM Silent p.Y681Y 0.26 TCGA-A6-6781-01 19 8576574 8576574 C T ZNF414 Silent p.P267P 0.22 TCGA-A6-6781-01 19 8808786 8808786 G A ACTL9 Missense_Mutation p.S89L 0.13 tolerated(0.24) benign(0.065) TCGA-A6-6781-01 19 9067786 9067786 C T MUC16 Missense_Mutation p.D6554N 0.27 unknown(0) TCGA-A6-6781-01 19 9721005 9721005 G A ZNF561 Silent p.T444T 0.23 TCGA-A6-6781-01 1 101004724 101004724 G A GPR88 Missense_Mutation p.A68T 0.25 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 1 101383666 101383666 G A SLC30A7 Missense_Mutation p.S230N 0.17 tolerated(0.7) benign(0.007) TCGA-A6-6781-01 1 101705205 101705205 G A S1PR1 Missense_Mutation p.C222Y 0.17 deleterious(0.01) benign(0.233) TCGA-A6-6781-01 1 10699897 10699897 C T CASZ1 Missense_Mutation p.R1461H 0.29 tolerated(0.07) probably_damaging(1) TCGA-A6-6781-01 1 109197447 109197447 C T HENMT1 Missense_Mutation p.D97N 0.24 deleterious(0.04) benign(0.314) TCGA-A6-6781-01 1 109366002 109366003 - T AKNAD1 Frame_Shift_Ins p.N719Kfs*23 0.14 TCGA-A6-6781-01 1 109793685 109793685 G A CELSR2 Silent p.L328L 0.17 TCGA-A6-6781-01 1 109801561 109801561 G A CELSR2 Missense_Mutation p.R1273H 0.17 deleterious(0.01) possibly_damaging(0.75) TCGA-A6-6781-01 1 109803855 109803855 C T CELSR2 Missense_Mutation p.R1384C 0.35 deleterious(0) probably_damaging(0.987) TCGA-A6-6781-01 1 109811375 109811375 C T CELSR2 Missense_Mutation p.T2164M 0.26 deleterious(0) probably_damaging(0.996) TCGA-A6-6781-01 1 110170883 110170883 C T AMPD2 Missense_Mutation p.T474M 0.26 tolerated(0.29) probably_damaging(0.909) TCGA-A6-6781-01 1 111216633 111216633 C T KCNA3 Missense_Mutation p.A267T 0.31 tolerated(0.73) benign(0.006) TCGA-A6-6781-01 1 112234007 112234007 C A RAP1A Missense_Mutation p.L9I 0.22 deleterious(0.02) probably_damaging(0.968) TCGA-A6-6781-01 1 112269659 112269659 G - FAM212B Frame_Shift_Del p.T276Qfs*25 0.12 TCGA-A6-6781-01 1 112525000 112525000 C T KCND3 Missense_Mutation p.E117K 0.09 deleterious(0) probably_damaging(0.956) TCGA-A6-6781-01 1 11303200 11303200 C T MTOR Silent p.A461A 0.24 TCGA-A6-6781-01 1 113058942 113058942 G A WNT2B Missense_Mutation p.G195D 0.25 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 1 113059864 113059864 G A WNT2B Missense_Mutation p.R268H 0.22 deleterious(0) probably_damaging(0.909) TCGA-A6-6781-01 1 11319406 11319406 C T MTOR Missense_Mutation p.V21I 0.23 tolerated(0.34) benign(0.001) TCGA-A6-6781-01 1 113235433 113235433 G A MOV10 Missense_Mutation p.R341Q 0.27 tolerated(1) benign(0.002) TCGA-A6-6781-01 1 113471890 113471890 G - SLC16A1 Frame_Shift_Del p.P14Qfs*10 0.21 TCGA-A6-6781-01 1 113657106 113657106 C T LRIG2 Missense_Mutation p.A713V 0.23 tolerated(0.67) benign(0.416) TCGA-A6-6781-01 1 1153133 1153133 C T SDF4 Intron 0.37 TCGA-A6-6781-01 1 1169132 1169132 T - B3GALT6 3'UTR 0.18 TCGA-A6-6781-01 1 11736105 11736105 G - MAD2L2 Frame_Shift_Del p.P142Qfs*45 0.25 TCGA-A6-6781-01 1 117559774 117559774 G A CD101 Missense_Mutation p.A431T 0.21 tolerated(1) benign(0.001) TCGA-A6-6781-01 1 11875969 11875969 G T CLCN6 Splice_Site p.X71_splice 0.26 TCGA-A6-6781-01 1 120468185 120468185 G - NOTCH2 Frame_Shift_Del p.S1419Afs*8 0.20 TCGA-A6-6781-01 1 12267100 12267100 G A TNFRSF1B 3'UTR 0.26 TCGA-A6-6781-01 1 1230828 1230828 G A ACAP3 Silent p.R604R 0.26 TCGA-A6-6781-01 1 12520418 12520418 C T VPS13D Missense_Mutation p.A4210V 0.09 possibly_damaging(0.837) TCGA-A6-6781-01 1 1267954 1267954 C A TAS1R3 Missense_Mutation p.P348Q 0.20 tolerated(0.15) possibly_damaging(0.479) TCGA-A6-6781-01 1 13840011 13840011 G A LRRC38 Silent p.H26H 0.31 TCGA-A6-6781-01 1 14109058 14109058 A G PRDM2 Missense_Mutation p.K1590E 0.21 unknown(0) TCGA-A6-6781-01 1 1425970 1425970 C T ATAD3B Silent p.Y511Y 0.27 TCGA-A6-6781-01 1 144014003 144014003 C T SRGAP2B RNA 0.12 TCGA-A6-6781-01 1 144865845 144865845 C T PDE4DIP Missense_Mutation p.R1912Q 0.16 tolerated(0.51) benign(0.006) TCGA-A6-6781-01 1 144917533 144917533 C T PDE4DIP Missense_Mutation p.R524H 0.11 tolerated(0.07) benign(0.289) TCGA-A6-6781-01 1 145586457 145586457 C T PIAS3 3'UTR 0.40 TCGA-A6-6781-01 1 146684955 146684955 T - FMO5 Frame_Shift_Del p.K136Rfs*3 0.27 TCGA-A6-6781-01 1 147092566 147092566 C T BCL9 Missense_Mutation p.H869Y 0.25 deleterious(0.05) benign(0.013) TCGA-A6-6781-01 1 147094076 147094076 C - BCL9 Frame_Shift_Del p.P971Hfs*11 0.20 TCGA-A6-6781-01 1 14925606 14925606 C T KAZN Missense_Mutation p.A38V 0.17 tolerated(0.16) possibly_damaging(0.75) TCGA-A6-6781-01 1 149884981 149884981 C - SV2A Frame_Shift_Del p.E138Rfs*39 0.21 TCGA-A6-6781-01 1 149900796 149900796 A - MTMR11 3'UTR 0.18 TCGA-A6-6781-01 1 150680739 150680739 A G HORMAD1 Silent p.Y180Y 0.17 TCGA-A6-6781-01 1 151076151 151076151 G T GABPB2 Missense_Mutation p.A246S 0.21 tolerated(0.13) benign(0.017) TCGA-A6-6781-01 1 151131473 151131473 G A TNFAIP8L2 Silent p.T100T 0.14 TCGA-A6-6781-01 1 151134338 151134338 G A LYSMD1 Missense_Mutation p.T140I 0.19 tolerated_low_confidence(0.11) benign(0.049) TCGA-A6-6781-01 1 151584740 151584740 C T SNX27 Silent p.G21G 0.28 TCGA-A6-6781-01 1 151688502 151688502 C T CELF3 5'UTR 0.36 TCGA-A6-6781-01 1 151778902 151778902 C T RORC 3'Flank 0.11 TCGA-A6-6781-01 1 151823652 151823652 C T THEM5 Missense_Mutation p.R114H 0.21 deleterious(0.04) benign(0.035) TCGA-A6-6781-01 1 152056636 152056636 A T TCHHL1 3'UTR 0.20 TCGA-A6-6781-01 1 152056649 152056649 A T TCHHL1 3'UTR 0.21 TCGA-A6-6781-01 1 152278837 152278837 C T FLG Missense_Mutation p.R2842H 0.11 possibly_damaging(0.453) TCGA-A6-6781-01 1 152283973 152283973 G A FLG Missense_Mutation p.A1130V 0.28 possibly_damaging(0.483) TCGA-A6-6781-01 1 152648873 152648873 C T LCE2C 3'UTR 0.29 TCGA-A6-6781-01 1 153906129 153906129 G - DENND4B Frame_Shift_Del p.R1054Dfs*76 0.21 TCGA-A6-6781-01 1 154140343 154140343 C T TPM3 3'UTR 0.22 TCGA-A6-6781-01 1 154223658 154223658 C T UBAP2L Missense_Mutation p.P452L 0.18 deleterious(0.02) unknown(0) TCGA-A6-6781-01 1 154295511 154295511 C A AQP10 Missense_Mutation p.P96T 0.15 deleterious(0.04) possibly_damaging(0.672) TCGA-A6-6781-01 1 154744836 154744836 G A KCNN3 Missense_Mutation p.R355W 0.27 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 1 155020588 155020588 C T DCST1 Missense_Mutation p.A604V 0.24 tolerated(0.11) benign(0.127) TCGA-A6-6781-01 1 155239279 155239279 C T CLK2 Silent p.S133S 0.27 TCGA-A6-6781-01 1 155265309 155265309 T C PKLR Silent p.A142A 0.31 TCGA-A6-6781-01 1 155324361 155324361 T - ASH1L Frame_Shift_Del p.K2372Nfs*5 0.21 TCGA-A6-6781-01 1 155449753 155449753 T - ASH1L Frame_Shift_Del p.I970Lfs*9 0.17 TCGA-A6-6781-01 1 155921938 155921938 G A ARHGEF2 Silent p.S691S 0.33 TCGA-A6-6781-01 1 155927552 155927552 C T ARHGEF2 Missense_Mutation p.R556Q 0.27 deleterious(0) possibly_damaging(0.657) TCGA-A6-6781-01 1 156046782 156046782 G A MEX3A Silent p.Y382Y 0.22 TCGA-A6-6781-01 1 1560673 1560673 G A MIB2 Silent p.P358P 0.11 TCGA-A6-6781-01 1 156255497 156255498 - C TMEM79 Frame_Shift_Ins p.R163Pfs*9 0.21 TCGA-A6-6781-01 1 156255665 156255665 C T TMEM79 Silent p.Y216Y 0.24 TCGA-A6-6781-01 1 1564900 1564900 G A MIB2 Silent p.A954A 0.28 TCGA-A6-6781-01 1 156534434 156534434 C T IQGAP3 Missense_Mutation p.R137Q 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 1 156594147 156594147 G A HAPLN2 Silent p.V148V 0.21 TCGA-A6-6781-01 1 156880032 156880032 G A PEAR1 Missense_Mutation p.R562H 0.25 tolerated(0.48) benign(0.032) TCGA-A6-6781-01 1 157094741 157094741 C T ETV3 Silent p.K477K 0.23 TCGA-A6-6781-01 1 157095223 157095223 G A ETV3 Missense_Mutation p.R317W 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 1 157494037 157494037 A G FCRL5 Intron 0.19 TCGA-A6-6781-01 1 158262586 158262586 G A CD1C Missense_Mutation p.A271T 0.18 tolerated(0.13) benign(0.087) TCGA-A6-6781-01 1 158614075 158614075 G A SPTA1 Missense_Mutation p.R1436W 0.22 deleterious(0) probably_damaging(0.937) TCGA-A6-6781-01 1 158636110 158636110 C T SPTA1 Missense_Mutation p.R739H 0.17 tolerated(1) benign(0.044) TCGA-A6-6781-01 1 159024743 159024743 A - IFI16 3'UTR 0.16 TCGA-A6-6781-01 1 159410279 159410279 G A OR10J1 Missense_Mutation p.R244Q 0.18 tolerated(0.16) benign(0.091) TCGA-A6-6781-01 1 159856361 159856361 C T CCDC19 Missense_Mutation p.R236Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 1 159858183 159858183 C T CCDC19 Missense_Mutation p.A126T 0.17 tolerated(0.07) possibly_damaging(0.864) TCGA-A6-6781-01 1 159900201 159900201 C T IGSF9 Silent p.G614G 0.23 TCGA-A6-6781-01 1 160160765 160160765 C T CASQ1 Missense_Mutation p.P75L 0.30 tolerated(0.46) benign(0.003) TCGA-A6-6781-01 1 160267380 160267380 G A COPA Silent p.G720G 0.17 TCGA-A6-6781-01 1 160277001 160277001 G A COPA Silent p.A418A 0.26 TCGA-A6-6781-01 1 160340685 160340685 G A NHLH1 Missense_Mutation p.R55Q 0.17 tolerated(0.3) benign(0.238) TCGA-A6-6781-01 1 16053822 16053822 G A PLEKHM2 Missense_Mutation p.G419R 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-6781-01 1 16054191 16054191 C T PLEKHM2 Missense_Mutation p.P542S 0.27 tolerated_low_confidence(0.11) benign(0.001) TCGA-A6-6781-01 1 161008354 161008354 C T TSTD1 Silent p.A40A 0.20 TCGA-A6-6781-01 1 161173225 161173225 A G NDUFS2 Splice_Site p.X32_splice 0.30 TCGA-A6-6781-01 1 161326489 161326489 G A SDHC Silent p.S88S 0.29 TCGA-A6-6781-01 1 161647309 161647309 C T FCGR2B Missense_Mutation p.A300V 0.18 tolerated(0.2) benign(0.027) TCGA-A6-6781-01 1 16262116 16262116 G A SPEN Silent p.Q3127Q 0.24 TCGA-A6-6781-01 1 16451592 16451592 G - EPHA2 3'UTR 0.19 TCGA-A6-6781-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.33 TCGA-A6-6781-01 1 165513828 165513828 G A LRRC52 Missense_Mutation p.G99R 0.25 deleterious(0) probably_damaging(0.971) TCGA-A6-6781-01 1 165624763 165624764 CT - MGST3 3'UTR 0.19 TCGA-A6-6781-01 1 166891992 166891992 C T ILDR2 Missense_Mutation p.R350H 0.29 deleterious(0.04) possibly_damaging(0.781) TCGA-A6-6781-01 1 166958585 166958585 C T MAEL 5'UTR 0.28 TCGA-A6-6781-01 1 167023580 167023580 G A GPA33 Silent p.L317L 0.21 TCGA-A6-6781-01 1 167024342 167024342 A G GPA33 Missense_Mutation p.M233T 0.24 deleterious(0) probably_damaging(0.94) TCGA-A6-6781-01 1 167407808 167407808 G A CD247 Missense_Mutation p.P100L 0.33 tolerated(0.17) benign(0.057) TCGA-A6-6781-01 1 169529961 169529961 G A F5 Silent p.D139D 0.20 TCGA-A6-6781-01 1 169565288 169565288 G A SELP Missense_Mutation p.P659L 0.25 tolerated(0.7) benign(0) TCGA-A6-6781-01 1 1696764 1696764 C T NADK Missense_Mutation p.G28S 0.17 deleterious_low_confidence(0.04) probably_damaging(0.937) TCGA-A6-6781-01 1 17022987 17022987 C T ESPNP RNA 0.10 TCGA-A6-6781-01 1 171302037 171302037 A G FMO4 Missense_Mutation p.I273V 0.23 tolerated(0.1) benign(0.015) TCGA-A6-6781-01 1 171492399 171492399 T C PRRC2C Silent p.S289S 0.18 TCGA-A6-6781-01 1 172502624 172502624 T C SUCO Missense_Mutation p.C17R 0.22 deleterious_low_confidence(0.01) benign(0.24) TCGA-A6-6781-01 1 172628518 172628518 G A FASLG Silent p.P59P 0.14 TCGA-A6-6781-01 1 17332000 17332000 C T ATP13A2 Missense_Mutation p.V53M 0.22 tolerated(0.23) benign(0.104) TCGA-A6-6781-01 1 1736001 1736001 C T GNB1 Missense_Mutation p.R96H 0.24 tolerated(0.06) benign(0.013) TCGA-A6-6781-01 1 17402182 17402182 C T PADI2 Missense_Mutation p.G483S 0.21 deleterious(0.05) benign(0.014) TCGA-A6-6781-01 1 17431488 17431488 C T PADI2 Missense_Mutation p.R54H 0.14 tolerated(0.84) benign(0.004) TCGA-A6-6781-01 1 175046851 175046851 C T TNN Silent p.C99C 0.22 TCGA-A6-6781-01 1 17657501 17657501 G A PADI4 Missense_Mutation p.A44T 0.26 tolerated(0.1) benign(0.063) TCGA-A6-6781-01 1 17721479 17721479 G A PADI6 RNA 0.18 TCGA-A6-6781-01 1 179013215 179013215 C A FAM20B Missense_Mutation p.P78H 0.21 deleterious(0) probably_damaging(0.984) TCGA-A6-6781-01 1 17907119 17907119 C A ARHGEF10L Missense_Mutation p.P10H 0.24 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-A6-6781-01 1 179452332 179452332 C T AXDND1 Silent p.N689N 0.21 TCGA-A6-6781-01 1 179460808 179460808 C T AXDND1 Nonsense_Mutation p.R743* 0.22 TCGA-A6-6781-01 1 17966701 17966701 G A ARHGEF10L Missense_Mutation p.G726S 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-A6-6781-01 1 181689358 181689358 C T CACNA1E Missense_Mutation p.R590W 0.21 deleterious(0) possibly_damaging(0.898) TCGA-A6-6781-01 1 182026682 182026683 - C ZNF648 Frame_Shift_Ins p.A155Gfs*92 0.12 TCGA-A6-6781-01 1 186280851 186280851 A - TPR 3'UTR 0.26 TCGA-A6-6781-01 1 18809917 18809917 C T KLHDC7A 3'UTR 0.30 TCGA-A6-6781-01 1 196876009 196876009 T - CFHR4 Frame_Shift_Del p.F153Lfs*38 0.17 TCGA-A6-6781-01 1 196879471 196879471 G A CFHR4 Missense_Mutation p.R286H 0.18 tolerated(0.52) possibly_damaging(0.521) TCGA-A6-6781-01 1 197073532 197073532 G A ASPM Nonsense_Mutation p.R1617* 0.19 TCGA-A6-6781-01 1 197111602 197111602 T C ASPM Missense_Mutation p.T594A 0.19 tolerated(0.21) benign(0.004) TCGA-A6-6781-01 1 197128316 197128316 T A ZBTB41 3'UTR 0.29 TCGA-A6-6781-01 1 20008900 20008900 C T TMCO4 3'UTR 0.33 TCGA-A6-6781-01 1 200843224 200843224 C T GPR25 Silent p.A353A 0.30 TCGA-A6-6781-01 1 200959715 200959715 G A KIF21B Missense_Mutation p.R942W 0.10 deleterious(0) possibly_damaging(0.781) TCGA-A6-6781-01 1 201081382 201081382 C T CACNA1S Missense_Mutation p.R29Q 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-A6-6781-01 1 201687674 201687674 G A NAV1 Silent p.S339S 0.16 TCGA-A6-6781-01 1 201966602 201966602 C T RNPEP Missense_Mutation p.T337I 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-A6-6781-01 1 20209115 20209115 C G OTUD3 Missense_Mutation p.R37G 0.07 deleterious(0) probably_damaging(0.946) TCGA-A6-6781-01 1 203683387 203683387 G A ATP2B4 Silent p.A796A 0.22 TCGA-A6-6781-01 1 204095052 204095052 G A SOX13 Silent p.P553P 0.26 TCGA-A6-6781-01 1 204230495 204230495 C - PLEKHA6 Frame_Shift_Del p.E155Rfs*80 0.14 TCGA-A6-6781-01 1 204403040 204403040 A G PIK3C2B Missense_Mutation p.Y1242H 0.24 deleterious(0) possibly_damaging(0.672) TCGA-A6-6781-01 1 204587829 204587829 G - LRRN2 Frame_Shift_Del p.P431Qfs*5 0.20 TCGA-A6-6781-01 1 20517188 20517188 G A UBXN10 Missense_Mutation p.R45Q 0.19 tolerated(0.08) probably_damaging(0.998) TCGA-A6-6781-01 1 205589099 205589099 A - ELK4 Frame_Shift_Del p.S359Hfs*7 0.21 TCGA-A6-6781-01 1 20644082 20644082 C T VWA5B1 Missense_Mutation p.A208V 0.23 tolerated(0.14) possibly_damaging(0.631) TCGA-A6-6781-01 1 207073697 207073697 G A IL24 Missense_Mutation p.V101I 0.18 tolerated(0.18) benign(0.146) TCGA-A6-6781-01 1 207106443 207106443 G A PIGR Missense_Mutation p.R592W 0.13 deleterious(0) possibly_damaging(0.773) TCGA-A6-6781-01 1 207139062 207139062 G A FCAMR Missense_Mutation p.A104V 0.22 deleterious(0.01) benign(0.441) TCGA-A6-6781-01 1 207314475 207314475 C T C4BPA Missense_Mutation p.A433V 0.29 tolerated(0.16) possibly_damaging(0.583) TCGA-A6-6781-01 1 208217877 208217877 G A PLXNA2 Missense_Mutation p.R1284C 0.18 deleterious(0) probably_damaging(0.982) TCGA-A6-6781-01 1 210407341 210407341 A T SERTAD4 Intron 0.20 TCGA-A6-6781-01 1 210637950 210637950 G A HHAT Missense_Mutation p.A321T 0.26 tolerated(0.1) benign(0.043) TCGA-A6-6781-01 1 211264015 211264015 A C KCNH1 Missense_Mutation p.F110V 0.11 tolerated(0.13) benign(0.017) TCGA-A6-6781-01 1 211307275 211307275 C T KCNH1 Missense_Mutation p.G5R 0.14 tolerated(0.14) benign(0.172) TCGA-A6-6781-01 1 211534503 211534503 C T TRAF5 Missense_Mutation p.T232M 0.24 tolerated(0.09) benign(0.002) TCGA-A6-6781-01 1 2116139 2116139 T C PRKCZ Splice_Site p.X564_splice 0.16 TCGA-A6-6781-01 1 211652496 211652496 G A RD3 Missense_Mutation p.A157V 0.27 tolerated(0.97) benign(0.017) TCGA-A6-6781-01 1 211847722 211847722 C T NEK2 Missense_Mutation p.R77Q 0.06 deleterious(0) benign(0.26) TCGA-A6-6781-01 1 212459346 212459346 A G PPP2R5A 5'UTR 0.25 TCGA-A6-6781-01 1 21329263 21329263 C T EIF4G3 5'UTR 0.20 TCGA-A6-6781-01 1 214170286 214170286 C - PROX1 Frame_Shift_Del p.P138Qfs*12 0.22 TCGA-A6-6781-01 1 214543010 214543010 G A PTPN14 Nonsense_Mutation p.R1021* 0.18 TCGA-A6-6781-01 1 21546460 21546460 G A ECE1 Silent p.C767C 0.17 TCGA-A6-6781-01 1 215824087 215824087 G A USH2A Silent p.T4730T 0.25 TCGA-A6-6781-01 1 215933077 215933077 C T USH2A Missense_Mutation p.R3719H 0.22 probably_damaging(0.991) TCGA-A6-6781-01 1 216019331 216019331 A - USH2A Frame_Shift_Del p.W2964Gfs*10 0.16 TCGA-A6-6781-01 1 216741441 216741441 C T ESRRG Splice_Site p.X202_splice 0.18 TCGA-A6-6781-01 1 220154199 220154199 G A EPRS Missense_Mutation p.R1152C 0.28 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 1 220826571 220826571 G A MARK1 Missense_Mutation p.R622Q 0.25 tolerated(0.16) possibly_damaging(0.833) TCGA-A6-6781-01 1 22165466 22165466 G A HSPG2 Silent p.R3334R 0.27 TCGA-A6-6781-01 1 223285928 223285928 C T TLR5 Missense_Mutation p.R149H 0.23 tolerated(0.61) benign(0.005) TCGA-A6-6781-01 1 225607149 225607149 T A LBR Missense_Mutation p.K152N 0.08 deleterious(0.05) benign(0.282) TCGA-A6-6781-01 1 228111935 228111935 C T WNT9A Silent p.K173K 0.23 TCGA-A6-6781-01 1 228336479 228336479 C T GUK1 Missense_Mutation p.R218W 0.16 tolerated_low_confidence(0.14) possibly_damaging(0.874) TCGA-A6-6781-01 1 228470842 228470842 C T OBSCN Missense_Mutation p.A3294V 0.28 probably_damaging(0.949) TCGA-A6-6781-01 1 228503818 228503818 G A OBSCN Missense_Mutation p.R5385Q 0.25 benign(0.405) TCGA-A6-6781-01 1 22850904 22850904 G A ZBTB40 Silent p.T1164T 0.23 TCGA-A6-6781-01 1 228509577 228509577 G A OBSCN Missense_Mutation p.R5969H 0.34 probably_damaging(0.991) TCGA-A6-6781-01 1 22852920 22852920 G A ZBTB40 3'UTR 0.37 TCGA-A6-6781-01 1 228548204 228548204 G A OBSCN Intron 0.19 TCGA-A6-6781-01 1 228564865 228564865 G A OBSCN Missense_Mutation p.E8675K 0.33 probably_damaging(0.97) TCGA-A6-6781-01 1 228595807 228595807 T C TRIM17 3'UTR 0.12 TCGA-A6-6781-01 1 230492718 230492718 G - PGBD5 Frame_Shift_Del p.H158Qfs*33 0.19 TCGA-A6-6781-01 1 230820861 230820861 A G COG2 Missense_Mutation p.H420R 0.23 tolerated(0.23) benign(0.045) TCGA-A6-6781-01 1 231406534 231406534 C T GNPAT Missense_Mutation p.A437V 0.29 deleterious(0.01) benign(0.062) TCGA-A6-6781-01 1 233120423 233120423 C A PCNXL2 Intron 0.38 TCGA-A6-6781-01 1 233394472 233394472 G A PCNXL2 Missense_Mutation p.T379M 0.22 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-A6-6781-01 1 233511593 233511593 T - MLK4 Intron 0.20 TCGA-A6-6781-01 1 23419585 23419585 C T LUZP1 Silent p.A390A 0.14 TCGA-A6-6781-01 1 23520268 23520268 G A HTR1D Missense_Mutation p.R149C 0.17 deleterious(0.03) probably_damaging(0.976) TCGA-A6-6781-01 1 236156946 236156946 C T NID1 Silent p.P918P 0.19 TCGA-A6-6781-01 1 24086010 24086010 C A TCEB3 Missense_Mutation p.P782T 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 1 24125440 24125440 G A GALE Silent p.L20L 0.23 TCGA-A6-6781-01 1 2441502 2441502 A G PANK4 Missense_Mutation p.V678A 0.20 tolerated(0.69) benign(0.099) TCGA-A6-6781-01 1 24418756 24418756 T C MYOM3 Silent p.R380R 0.18 TCGA-A6-6781-01 1 245530418 245530418 G A KIF26B Missense_Mutation p.A250T 0.21 tolerated(0.2) unknown(0) TCGA-A6-6781-01 1 24649601 24649601 T - GRHL3 Intron 0.20 TCGA-A6-6781-01 1 246754860 246754860 C T CNST 5'UTR 0.25 TCGA-A6-6781-01 1 246940013 246940013 T - RP11-439E19.10 3'Flank 0.14 TCGA-A6-6781-01 1 246943787 246943787 C T RP11-439E19.10 3'Flank 0.13 TCGA-A6-6781-01 1 248637516 248637516 G - OR2T3 Frame_Shift_Del p.V289Cfs*2 0.09 TCGA-A6-6781-01 1 248813773 248813773 C T OR2T27 Missense_Mutation p.R138H 0.17 tolerated(0.85) benign(0.014) TCGA-A6-6781-01 1 249142046 249142046 G A ZNF672 Silent p.T191T 0.32 TCGA-A6-6781-01 1 2519825 2519825 G A FAM213B Intron 0.26 TCGA-A6-6781-01 1 25667030 25667030 A G TMEM50A Missense_Mutation p.E18G 0.11 tolerated(0.15) probably_damaging(0.911) TCGA-A6-6781-01 1 25890209 25890209 C - LDLRAP1 Frame_Shift_Del p.T225Rfs*18 0.16 TCGA-A6-6781-01 1 26581859 26581859 G A CEP85 Missense_Mutation p.G136S 0.25 tolerated(0.61) benign(0.02) TCGA-A6-6781-01 1 26872518 26872518 C T RPS6KA1 Missense_Mutation p.R43W 0.26 tolerated(0.1) benign(0) TCGA-A6-6781-01 1 26888001 26888001 T C RPS6KA1 Silent p.Y488Y 0.15 TCGA-A6-6781-01 1 27056058 27056058 A - ARID1A Intron 0.20 TCGA-A6-6781-01 1 27097751 27097751 C - ARID1A Frame_Shift_Del p.P1115Qfs*46 0.27 TCGA-A6-6781-01 1 27121713 27121713 C T PIGV Silent p.C396C 0.18 TCGA-A6-6781-01 1 27661941 27661941 T A TMEM222 Missense_Mutation p.V204D 0.29 deleterious(0) benign(0.367) TCGA-A6-6781-01 1 28285040 28285040 G A SMPDL3B Silent p.P353P 0.38 TCGA-A6-6781-01 1 28564029 28564029 T - ATPIF1 Intron 0.40 TCGA-A6-6781-01 1 28607256 28607256 G A SESN2 Silent p.A462A 0.22 TCGA-A6-6781-01 1 28793135 28793135 C A PHACTR4 Missense_Mutation p.P237T 0.24 tolerated(0.06) probably_damaging(1) TCGA-A6-6781-01 1 29040713 29040713 C T GMEB1 Missense_Mutation p.R384W 0.29 deleterious(0) probably_damaging(0.965) TCGA-A6-6781-01 1 29069632 29069632 G A YTHDF2 Missense_Mutation p.V284I 0.25 tolerated(0.11) benign(0.023) TCGA-A6-6781-01 1 29070155 29070155 T - YTHDF2 Frame_Shift_Del p.F459Sfs*15 0.22 TCGA-A6-6781-01 1 29189487 29189487 G A OPRD1 Missense_Mutation p.V271M 0.20 deleterious(0.03) probably_damaging(0.987) TCGA-A6-6781-01 1 31414866 31414866 C T PUM1 Silent p.Q1033Q 0.27 TCGA-A6-6781-01 1 31883109 31883109 G A SERINC2 Intron 0.31 TCGA-A6-6781-01 1 32384693 32384693 C T PTP4A2 5'UTR 0.28 TCGA-A6-6781-01 1 32646949 32646949 G - TXLNA Frame_Shift_Del p.G94Afs*35 0.15 TCGA-A6-6781-01 1 32669823 32669823 G A CCDC28B Missense_Mutation p.R123Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 1 32672662 32672662 C T IQCC Missense_Mutation p.R247C 0.19 deleterious(0.04) benign(0.005) TCGA-A6-6781-01 1 3328880 3328880 G A PRDM16 Missense_Mutation p.G707S 0.37 tolerated(0.07) probably_damaging(0.984) TCGA-A6-6781-01 1 3550006 3550006 G A WRAP73 Missense_Mutation p.P293L 0.17 tolerated(0.27) benign(0.029) TCGA-A6-6781-01 1 35908558 35908558 A - KIAA0319L Frame_Shift_Del p.W910Gfs*10 0.24 TCGA-A6-6781-01 1 36563523 36563523 C T COL8A2 Missense_Mutation p.A587T 0.14 tolerated(0.09) possibly_damaging(0.781) TCGA-A6-6781-01 1 37337850 37337850 C T GRIK3 Missense_Mutation p.G224D 0.17 tolerated(0.26) benign(0.056) TCGA-A6-6781-01 1 37947425 37947425 C T ZC3H12A Silent p.F269F 0.18 TCGA-A6-6781-01 1 38265560 38265560 G A MANEAL Missense_Mutation p.M353I 0.14 tolerated(0.63) benign(0.181) TCGA-A6-6781-01 1 38281060 38281060 G A MTF1 Silent p.S670S 0.31 TCGA-A6-6781-01 1 39879818 39879818 C T KIAA0754 Missense_Mutation p.A1158V 0.37 benign(0.193) TCGA-A6-6781-01 1 40092039 40092039 A G HEYL 3'UTR 0.31 TCGA-A6-6781-01 1 40092724 40092724 G A HEYL Missense_Mutation p.R148C 0.24 deleterious(0.02) benign(0.411) TCGA-A6-6781-01 1 40235514 40235514 C T OXCT2 Missense_Mutation p.V472M 0.20 deleterious(0.01) possibly_damaging(0.893) TCGA-A6-6781-01 1 40363391 40363391 C T MYCL Missense_Mutation p.E280K 0.26 tolerated(0.21) benign(0.011) TCGA-A6-6781-01 1 42045648 42045648 G A HIVEP3 Silent p.C1607C 0.24 TCGA-A6-6781-01 1 43213399 43213399 C T LEPRE1 Missense_Mutation p.V637M 0.27 deleterious(0.01) benign(0.273) TCGA-A6-6781-01 1 43739583 43739583 C T TMEM125 3'UTR 0.25 TCGA-A6-6781-01 1 43870113 43870113 C T SZT2 Silent p.G130G 0.24 TCGA-A6-6781-01 1 43896644 43896644 G C SZT2 Missense_Mutation p.G1543A 0.22 tolerated(0.05) benign(0.389) TCGA-A6-6781-01 1 44459563 44459563 G A CCDC24 Missense_Mutation p.G142S 0.18 tolerated(1) benign(0.011) TCGA-A6-6781-01 1 45101237 45101237 C T RNF220 Missense_Mutation p.R324W 0.24 deleterious(0) probably_damaging(0.986) TCGA-A6-6781-01 1 45271859 45271859 C T TCTEX1D4 Missense_Mutation p.R161H 0.19 deleterious(0.03) probably_damaging(0.991) TCGA-A6-6781-01 1 45323376 45323376 C A EIF2B3 Missense_Mutation p.A436S 0.21 tolerated(0.64) benign(0.002) TCGA-A6-6781-01 1 45798780 45798780 C T MUTYH Missense_Mutation p.G148R 0.28 tolerated(1) benign(0) TCGA-A6-6781-01 1 45805749 45805749 A G MUTYH Intron 0.21 TCGA-A6-6781-01 1 46027472 46027472 G A AKR1A1 Silent p.A2A 0.14 TCGA-A6-6781-01 1 46751274 46751275 - A LRRC41 Frame_Shift_Ins p.I419Yfs*85 0.26 TCGA-A6-6781-01 1 47611832 47611832 C T CYP4A22 Intron 0.21 TCGA-A6-6781-01 1 47746431 47746431 G T STIL Missense_Mutation p.P567T 0.20 tolerated(0.39) possibly_damaging(0.818) TCGA-A6-6781-01 1 50666785 50666785 G A ELAVL4 Missense_Mutation p.G363R 0.29 deleterious(0.02) possibly_damaging(0.895) TCGA-A6-6781-01 1 53372233 53372233 C T ECHDC2 Missense_Mutation p.G139R 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 1 53544171 53544171 C - PODN Frame_Shift_Del p.I380Sfs*55 0.21 TCGA-A6-6781-01 1 53558445 53558445 C T SLC1A7 Missense_Mutation p.G271D 0.22 deleterious(0) probably_damaging(0.99) TCGA-A6-6781-01 1 53715076 53715076 G A LRP8 Silent p.S943S 0.21 TCGA-A6-6781-01 1 53930359 53930359 C T DMRTB1 Missense_Mutation p.P267L 0.19 tolerated(0.31) benign(0.024) TCGA-A6-6781-01 1 54233439 54233439 C T NDC1 3'UTR 0.25 TCGA-A6-6781-01 1 54418139 54418139 G A LRRC42 Missense_Mutation p.R156Q 0.19 tolerated(0.08) benign(0.148) TCGA-A6-6781-01 1 55072843 55072843 C T ACOT11 Silent p.D469D 0.24 TCGA-A6-6781-01 1 55072919 55072919 C T ACOT11 Missense_Mutation p.R495W 0.11 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 1 55253470 55253470 C T TTC22 Missense_Mutation p.S218N 0.13 tolerated(0.33) benign(0.002) TCGA-A6-6781-01 1 55603547 55603547 G A USP24 Missense_Mutation p.R987W 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 1 57431587 57431587 G A C8B Missense_Mutation p.P12L 0.34 tolerated_low_confidence(0.43) benign(0.008) TCGA-A6-6781-01 1 57480714 57480714 C T DAB1 Missense_Mutation p.R429H 0.28 deleterious(0.01) possibly_damaging(0.852) TCGA-A6-6781-01 1 61921070 61921070 C A NFIA 3'UTR 0.15 TCGA-A6-6781-01 1 64104428 64104428 C T PGM1 Silent p.D385D 0.26 TCGA-A6-6781-01 1 64709906 64709906 T - UBE2U 3'UTR 0.18 TCGA-A6-6781-01 1 65099911 65099911 G A CACHD1 Missense_Mutation p.R274Q 0.24 tolerated(0.35) benign(0.022) TCGA-A6-6781-01 1 65330630 65330630 T - JAK1 Frame_Shift_Del p.N339Ifs*3 0.19 TCGA-A6-6781-01 1 66379023 66379023 C T PDE4B Missense_Mutation p.T9M 0.29 deleterious_low_confidence(0) benign(0.169) TCGA-A6-6781-01 1 67391895 67391895 G C MIER1 Missense_Mutation p.R46S 0.18 deleterious_low_confidence(0.04) benign(0.043) TCGA-A6-6781-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.17 TCGA-A6-6781-01 1 68659859 68659859 G A WLS Missense_Mutation p.A51V 0.27 tolerated(0.3) benign(0.001) TCGA-A6-6781-01 1 68948407 68948407 T C DEPDC1 Missense_Mutation p.T362A 0.25 tolerated(0.47) benign(0.002) TCGA-A6-6781-01 1 76215130 76215130 A G ACADM Silent p.S249S 0.18 TCGA-A6-6781-01 1 76215193 76215193 C T ACADM Silent p.D270D 0.18 TCGA-A6-6781-01 1 7700569 7700569 C T CAMTA1 Missense_Mutation p.A207V 0.13 tolerated(0.1) benign(0.012) TCGA-A6-6781-01 1 78034128 78034128 C T ZZZ3 Missense_Mutation p.M785I 0.20 tolerated(0.14) benign(0) TCGA-A6-6781-01 1 78338701 78338701 T - FAM73A Frame_Shift_Del p.F527Lfs*15 0.16 TCGA-A6-6781-01 1 78407848 78407848 A G NEXN Silent p.L538L 0.22 TCGA-A6-6781-01 1 78511722 78511722 G - GIPC2 5'UTR 0.23 TCGA-A6-6781-01 1 82402430 82402430 G A LPHN2 Silent p.Q102Q 0.23 TCGA-A6-6781-01 1 8415573 8415573 C T RERE Missense_Mutation p.A1525T 0.41 unknown(0) TCGA-A6-6781-01 1 85331173 85331173 C T LPAR3 Missense_Mutation p.V211M 0.29 tolerated(0.62) benign(0.002) TCGA-A6-6781-01 1 87025657 87025658 - A CLCA4 Frame_Shift_Ins p.R70Kfs*13 0.17 TCGA-A6-6781-01 1 8716370 8716370 C T RERE 5'UTR 0.37 TCGA-A6-6781-01 1 880468 880468 C A NOC2L Missense_Mutation p.E704D 0.25 tolerated(0.75) benign(0) TCGA-A6-6781-01 1 9074848 9074848 G A SLC2A7 Silent p.A265A 0.25 TCGA-A6-6781-01 1 9099867 9099867 C T SLC2A5 Missense_Mutation p.V293I 0.29 tolerated(1) benign(0.128) TCGA-A6-6781-01 1 9188756 9188756 C T GPR157 Missense_Mutation p.A111T 0.24 tolerated(0.44) benign(0.011) TCGA-A6-6781-01 1 93167772 93167772 C T EVI5 Missense_Mutation p.A233T 0.26 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 1 94032944 94032944 C T BCAR3 Missense_Mutation p.E731K 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-A6-6781-01 1 95360667 95360667 T - SLC44A3 3'UTR 0.20 TCGA-A6-6781-01 1 955647 955647 C T AGRN Missense_Mutation p.P32L 0.38 deleterious_low_confidence(0) unknown(0) TCGA-A6-6781-01 1 9642611 9642611 T - SLC25A33 3'UTR 0.15 TCGA-A6-6781-01 1 9714560 9714560 G A C1orf200 5'UTR 0.21 TCGA-A6-6781-01 20 10389380 10389380 C T MKKS Missense_Mutation p.A353T 0.27 tolerated(0.48) benign(0.014) TCGA-A6-6781-01 20 10629302 10629302 G A JAG1 Silent p.I488I 0.25 TCGA-A6-6781-01 20 1551550 1551550 T C SIRPB1 Missense_Mutation p.T329A 0.24 deleterious(0) probably_damaging(0.965) TCGA-A6-6781-01 20 18461120 18461120 G A POLR3F Silent p.V216V 0.20 TCGA-A6-6781-01 20 21492841 21492841 T C NKX2-2 Missense_Mutation p.Y181C 0.18 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 20 23065642 23065642 G A CD93 Silent p.C396C 0.23 TCGA-A6-6781-01 20 23066046 23066046 A G CD93 Missense_Mutation p.Y262H 0.18 tolerated(0.35) benign(0.017) TCGA-A6-6781-01 20 23066305 23066305 A G CD93 Silent p.I175I 0.23 TCGA-A6-6781-01 20 23346205 23346205 C - GZF1 Frame_Shift_Del p.H395Qfs*22 0.18 TCGA-A6-6781-01 20 2560594 2560594 A C TMC2 Splice_Site p.X243_splice 0.21 TCGA-A6-6781-01 20 31238121 31238121 C A C20orf203 RNA 0.16 TCGA-A6-6781-01 20 3127293 3127293 G T FASTKD5 3'UTR 0.11 TCGA-A6-6781-01 20 3193968 3193968 C T ITPA Missense_Mutation p.P43L 0.22 tolerated(0.07) possibly_damaging(0.561) TCGA-A6-6781-01 20 33345500 33345500 C T NCOA6 Missense_Mutation p.G351S 0.23 benign(0.002) TCGA-A6-6781-01 20 33500915 33500915 G - ACSS2 Frame_Shift_Del p.E132Rfs*38 0.20 TCGA-A6-6781-01 20 33586196 33586196 G A MYH7B Silent p.T1324T 0.12 TCGA-A6-6781-01 20 33834789 33834789 C T MMP24 Silent p.I131I 0.25 TCGA-A6-6781-01 20 34025666 34025666 C A GDF5 Missense_Mutation p.A15S 0.16 tolerated_low_confidence(0.72) benign(0.009) TCGA-A6-6781-01 20 34025876 34025876 C T GDF5 5'UTR 0.25 TCGA-A6-6781-01 20 34085743 34085743 G A CEP250 Missense_Mutation p.A1168T 0.32 benign(0.01) TCGA-A6-6781-01 20 34389518 34389519 - A PHF20 Frame_Shift_Ins p.N27Kfs*11 0.15 TCGA-A6-6781-01 20 34526791 34526791 C - PHF20 Frame_Shift_Del p.L826Cfs*62 0.21 TCGA-A6-6781-01 20 35125227 35125227 C A DLGAP4 Missense_Mutation p.L590M 0.23 tolerated(0.46) probably_damaging(1) TCGA-A6-6781-01 20 35406171 35406171 G - SOGA1 3'UTR 0.19 TCGA-A6-6781-01 20 35563544 35563544 C T SAMHD1 Missense_Mutation p.V133I 0.20 tolerated(0.96) benign(0.003) TCGA-A6-6781-01 20 3655458 3655458 G A ADAM33 Silent p.P124P 0.25 TCGA-A6-6781-01 20 3673201 3673201 G A SIGLEC1 Missense_Mutation p.R1333C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6781-01 20 3675098 3675098 C T SIGLEC1 Missense_Mutation p.S1009N 0.16 deleterious(0) probably_damaging(0.923) TCGA-A6-6781-01 20 37144975 37144975 C T RALGAPB Missense_Mutation p.A338V 0.21 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 20 3739292 3739292 G A C20orf27 Missense_Mutation p.A43V 0.27 tolerated(0.08) benign(0.239) TCGA-A6-6781-01 20 40102126 40102126 G A CHD6 Missense_Mutation p.R834W 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 20 4167938 4167938 G A SMOX Missense_Mutation p.G518S 0.31 deleterious(0) probably_damaging(0.99) TCGA-A6-6781-01 20 43559221 43559221 G A PABPC1L Missense_Mutation p.V365M 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 20 43942709 43942709 G A RBPJL Silent p.P264P 0.34 TCGA-A6-6781-01 20 44520910 44520910 A G CTSA Splice_Site p.X121_splice 0.06 TCGA-A6-6781-01 20 44531204 44531204 G A PLTP Missense_Mutation p.R328W 0.23 deleterious(0.01) possibly_damaging(0.86) TCGA-A6-6781-01 20 47991079 47991079 T C KCNB1 Missense_Mutation p.M340V 0.25 tolerated(0.15) probably_damaging(0.994) TCGA-A6-6781-01 20 48431593 48431593 C T SLC9A8 Silent p.T25T 0.25 TCGA-A6-6781-01 20 49366210 49366210 A G PARD6B Missense_Mutation p.S102G 0.17 tolerated(0.4) benign(0.005) TCGA-A6-6781-01 20 49575569 49575569 A G MOCS3 Missense_Mutation p.S64G 0.09 deleterious(0.03) benign(0.143) TCGA-A6-6781-01 20 50286538 50286538 G - ATP9A Frame_Shift_Del p.Q431Sfs*22 0.22 TCGA-A6-6781-01 20 50407911 50407911 C T SALL4 Missense_Mutation p.V371I 0.19 tolerated(0.14) benign(0.137) TCGA-A6-6781-01 20 52198948 52198948 C T ZNF217 Missense_Mutation p.A140T 0.30 deleterious(0) probably_damaging(0.977) TCGA-A6-6781-01 20 52611567 52611567 T - BCAS1 Frame_Shift_Del p.K304Rfs*49 0.25 TCGA-A6-6781-01 20 53205279 53205279 C T DOK5 Missense_Mutation p.R115W 0.19 deleterious(0) possibly_damaging(0.726) TCGA-A6-6781-01 20 56139294 56139295 - C PCK1 Frame_Shift_Ins p.N346Qfs*29 0.18 TCGA-A6-6781-01 20 56929281 56929281 A - RAB22A Frame_Shift_Del p.N151Tfs*3 0.21 TCGA-A6-6781-01 20 58514367 58514367 C T PPP1R3D Missense_Mutation p.R207H 0.25 tolerated(0.11) probably_damaging(0.979) TCGA-A6-6781-01 20 6022853 6022853 G A LRRN4 Silent p.S346S 0.29 TCGA-A6-6781-01 20 60736635 60736635 C T SS18L1 Silent p.N125N 0.28 TCGA-A6-6781-01 20 60868982 60868982 C T OSBPL2 3'UTR 0.27 TCGA-A6-6781-01 20 60885841 60885841 G A LAMA5 Silent p.D3442D 0.09 TCGA-A6-6781-01 20 60887267 60887267 C T LAMA5 Missense_Mutation p.A3156T 0.13 possibly_damaging(0.67) TCGA-A6-6781-01 20 61488983 61488983 C T TCFL5 Silent p.A334A 0.33 TCGA-A6-6781-01 20 61528256 61528256 G A DIDO1 Missense_Mutation p.P561S 0.29 benign(0.015) TCGA-A6-6781-01 20 62194826 62194826 G A HELZ2 Silent p.H1783H 0.31 TCGA-A6-6781-01 20 62201701 62201701 G T HELZ2 Intron 0.24 TCGA-A6-6781-01 20 62221439 62221439 C T GMEB2 3'UTR 0.19 TCGA-A6-6781-01 20 62223916 62223916 G A GMEB2 Missense_Mutation p.R267W 0.30 deleterious(0) probably_damaging(0.988) TCGA-A6-6781-01 20 62328276 62328276 C - TNFRSF6B Frame_Shift_Del p.P54Qfs*32 0.30 TCGA-A6-6781-01 20 62364983 62364983 C T ZGPAT Silent p.L255L 0.11 TCGA-A6-6781-01 20 62595503 62595503 C A ZNF512B Missense_Mutation p.E467D 0.22 tolerated(0.08) benign(0.32) TCGA-A6-6781-01 20 62655977 62655977 G T PRPF6 Missense_Mutation p.M613I 0.23 deleterious(0) probably_damaging(0.96) TCGA-A6-6781-01 20 742208 742208 C T SLC52A3 Intron 0.27 TCGA-A6-6781-01 20 826424 826424 C T FAM110A 3'UTR 0.22 TCGA-A6-6781-01 21 10952932 10952932 C T TPTE Missense_Mutation p.V89I 0.09 tolerated(0.12) benign(0.245) TCGA-A6-6781-01 21 17163836 17163836 C T USP25 Silent p.S136S 0.23 TCGA-A6-6781-01 21 18937835 18937835 C T CXADR Missense_Mutation p.S308F 0.23 deleterious(0.04) possibly_damaging(0.473) TCGA-A6-6781-01 21 30303546 30303546 G A LTN1 Silent p.H1769H 0.22 TCGA-A6-6781-01 21 32493072 32493072 C T TIAM1 Missense_Mutation p.A1464T 0.17 tolerated(0.57) benign(0.001) TCGA-A6-6781-01 21 33641394 33641394 A C MIS18A Missense_Mutation p.L219R 0.20 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 21 35287999 35287999 T C ATP5O Intron 0.32 TCGA-A6-6781-01 21 35473474 35473474 T C SLC5A3 3'UTR 0.22 TCGA-A6-6781-01 21 36081793 36081793 C T CLIC6 Missense_Mutation p.T619M 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 21 37649353 37649353 C T DOPEY2 Silent p.S1889S 0.13 TCGA-A6-6781-01 21 37759960 37759960 G A CHAF1B Missense_Mutation p.R64H 0.19 deleterious(0) probably_damaging(0.986) TCGA-A6-6781-01 21 40610416 40610416 G A BRWD1 Silent p.S855S 0.18 TCGA-A6-6781-01 21 41725583 41725583 G A DSCAM Missense_Mutation p.A248V 0.29 tolerated(0.15) probably_damaging(1) TCGA-A6-6781-01 21 41741045 41741045 G A DSCAM Silent p.S212S 0.33 TCGA-A6-6781-01 21 43164116 43164117 - C RIPK4 Frame_Shift_Ins p.V374Gfs*19 0.18 TCGA-A6-6781-01 21 43523845 43523845 G A C21orf128 Nonsense_Mutation p.R130* 0.20 TCGA-A6-6781-01 21 44190868 44190868 G A PDE9A Missense_Mutation p.R549H 0.29 tolerated(0.43) benign(0.004) TCGA-A6-6781-01 21 44195454 44195454 G T PDE9A 3'UTR 0.22 TCGA-A6-6781-01 21 44839770 44839770 C T SIK1 Missense_Mutation p.R363Q 0.32 tolerated(0.07) benign(0.005) TCGA-A6-6781-01 21 45094567 45094567 C T RRP1B Silent p.G136G 0.20 TCGA-A6-6781-01 21 45152221 45152221 G A PDXK Intron 0.31 TCGA-A6-6781-01 21 45959374 45959374 G A KRTAP10-1 Silent p.C220C 0.30 TCGA-A6-6781-01 21 46067018 46067018 C T KRTAP10-11 Missense_Mutation p.R215C 0.29 tolerated(1) benign(0) TCGA-A6-6781-01 21 46074550 46074550 G - KRTAP12-4 5'UTR 0.19 TCGA-A6-6781-01 21 46702334 46702334 C T POFUT2 Missense_Mutation p.V190I 0.27 tolerated(0.16) benign(0.266) TCGA-A6-6781-01 21 46900704 46900704 G A COL18A1 Missense_Mutation p.V695I 0.21 benign(0.208) TCGA-A6-6781-01 21 47321010 47321010 G A PCBP3 Missense_Mutation p.A108T 0.26 tolerated(0.4) benign(0.07) TCGA-A6-6781-01 21 47552253 47552253 C T COL6A2 Silent p.D949D 0.19 TCGA-A6-6781-01 21 48081731 48081731 G A PRMT2 Missense_Mutation p.R327H 0.21 tolerated(0.16) benign(0.002) TCGA-A6-6781-01 22 17582916 17582916 C T IL17RA Missense_Mutation p.T194M 0.23 tolerated(0.12) benign(0.137) TCGA-A6-6781-01 22 17680531 17680531 C T CECR1 Intron 0.21 TCGA-A6-6781-01 22 18273484 18273484 C T MICAL3 3'UTR 0.13 TCGA-A6-6781-01 22 18310414 18310414 G A MICAL3 Silent p.S1063S 0.19 TCGA-A6-6781-01 22 18566320 18566320 C T PEX26 Silent p.H163H 0.34 TCGA-A6-6781-01 22 19707718 19707718 G A SEPT5 Missense_Mutation p.V107M 0.18 deleterious(0) probably_damaging(0.959) TCGA-A6-6781-01 22 19808774 19808775 - T GNB1L Frame_Shift_Ins p.R37Afs*150 0.20 TCGA-A6-6781-01 22 19967287 19967287 C T ARVCF Missense_Mutation p.E459K 0.28 deleterious(0) probably_damaging(0.984) TCGA-A6-6781-01 22 20301912 20301912 C T DGCR6L 3'UTR 0.45 TCGA-A6-6781-01 22 21331366 21331366 G A AIFM3 Missense_Mutation p.V422I 0.24 tolerated(0.1) benign(0.05) TCGA-A6-6781-01 22 21347168 21347168 G A LZTR1 Missense_Mutation p.R412H 0.23 deleterious(0.05) probably_damaging(0.994) TCGA-A6-6781-01 22 21398477 21398477 G A AC002472.13 5'Flank 0.26 TCGA-A6-6781-01 22 23077495 23077495 C T IGLV2-18 Missense_Mutation p.T91M 0.20 tolerated_low_confidence(0.06) benign(0.392) TCGA-A6-6781-01 22 23658876 23658876 C T BCR 3'UTR 0.23 TCGA-A6-6781-01 22 23658925 23658925 G C BCR 3'UTR 0.19 TCGA-A6-6781-01 22 24036763 24036763 G A RGL4 Intron 0.29 TCGA-A6-6781-01 22 24562616 24562616 C T CABIN1 Missense_Mutation p.R1673C 0.21 tolerated(0.13) possibly_damaging(0.487) TCGA-A6-6781-01 22 25586672 25586672 G A KIAA1671 Silent p.S1782S 0.25 TCGA-A6-6781-01 22 26083622 26083622 C T ADRBK2 Silent p.Y315Y 0.15 TCGA-A6-6781-01 22 26239721 26239721 C A MYO18B Silent p.T1076T 0.16 TCGA-A6-6781-01 22 26776287 26776287 T C SEZ6L 3'UTR 0.22 TCGA-A6-6781-01 22 28193974 28193974 G A MN1 Missense_Mutation p.P853L 0.24 benign(0.305) TCGA-A6-6781-01 22 28379217 28379217 G A TTC28 Silent p.T2146T 0.24 TCGA-A6-6781-01 22 28410247 28410247 G C TTC28 Missense_Mutation p.P1403A 0.30 deleterious(0) possibly_damaging(0.672) TCGA-A6-6781-01 22 28503172 28503172 G A TTC28 Silent p.Y887Y 0.18 TCGA-A6-6781-01 22 29139893 29139893 C T HSCB Missense_Mutation p.T87I 0.14 tolerated(0.22) benign(0.027) TCGA-A6-6781-01 22 29446100 29446100 G A ZNRF3 Missense_Mutation p.G644D 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.703) TCGA-A6-6781-01 22 29694788 29694788 G T EWSR1 Nonsense_Mutation p.G500* 0.27 TCGA-A6-6781-01 22 29977030 29977030 C G NIPSNAP1 Silent p.R14R 0.22 TCGA-A6-6781-01 22 30077551 30077551 C T NF2 Silent p.S566S 0.16 TCGA-A6-6781-01 22 30403991 30403991 C T MTMR3 Nonsense_Mutation p.R327* 0.16 TCGA-A6-6781-01 22 30518061 30518061 G A HORMAD2 Missense_Mutation p.G226D 0.17 tolerated(0.41) possibly_damaging(0.656) TCGA-A6-6781-01 22 30681464 30681464 G A GATSL3 3'UTR 0.38 TCGA-A6-6781-01 22 31662056 31662056 C T LIMK2 Missense_Mutation p.R306W 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 22 31859082 31859082 C T EIF4ENIF1 Missense_Mutation p.R208H 0.19 tolerated(0.06) benign(0.039) TCGA-A6-6781-01 22 32241197 32241197 C T DEPDC5 Missense_Mutation p.R990W 0.35 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 22 33254081 33254081 C T TIMP3 Missense_Mutation p.R132C 0.31 deleterious(0) probably_damaging(0.932) TCGA-A6-6781-01 22 33700415 33700415 G A LARGE Silent p.A510A 0.22 TCGA-A6-6781-01 22 36712662 36712662 C T MYH9 Missense_Mutation p.R427H 0.26 probably_damaging(0.953) TCGA-A6-6781-01 22 36900575 36900575 C T FOXRED2 Missense_Mutation p.V256I 0.16 deleterious(0) possibly_damaging(0.762) TCGA-A6-6781-01 22 37407154 37407154 C T TST Missense_Mutation p.A270T 0.23 deleterious(0.03) probably_damaging(0.968) TCGA-A6-6781-01 22 38074571 38074571 C T LGALS1 Silent p.N57N 0.29 TCGA-A6-6781-01 22 38315158 38315158 G A MICALL1 Missense_Mutation p.G181D 0.30 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 22 38379438 38379438 C T SOX10 Silent p.A118A 0.25 TCGA-A6-6781-01 22 38476924 38476924 G A SLC16A8 Missense_Mutation p.A374V 0.22 deleterious(0.03) possibly_damaging(0.865) TCGA-A6-6781-01 22 38612382 38612382 A - MAFF 3'UTR 0.28 TCGA-A6-6781-01 22 39085106 39085106 C T JOSD1 Missense_Mutation p.V115I 0.16 tolerated(1) benign(0.164) TCGA-A6-6781-01 22 39146235 39146235 G A SUN2 Missense_Mutation p.S193L 0.12 tolerated(0.08) benign(0.005) TCGA-A6-6781-01 22 39777858 39777858 A G SYNGR1 Missense_Mutation p.Y214C 0.29 deleterious(0) possibly_damaging(0.63) TCGA-A6-6781-01 22 39887131 39887131 G T MGAT3 3'UTR 0.18 TCGA-A6-6781-01 22 40754875 40754875 C T ADSL Nonsense_Mutation p.Q164* 0.23 TCGA-A6-6781-01 22 40815206 40815206 C T MKL1 Silent p.A412A 0.18 TCGA-A6-6781-01 22 40815270 40815270 G A MKL1 Missense_Mutation p.P391L 0.32 tolerated(0.63) probably_damaging(0.991) TCGA-A6-6781-01 22 41723257 41723257 G A ZC3H7B Silent p.L111L 0.31 TCGA-A6-6781-01 22 42141950 42141950 G A MEI1 Missense_Mutation p.A534T 0.26 tolerated(0.25) benign(0.017) TCGA-A6-6781-01 22 42174862 42174862 G A MEI1 Intron 0.23 TCGA-A6-6781-01 22 42266997 42266997 C T SREBF2 Silent p.T275T 0.17 TCGA-A6-6781-01 22 42293147 42293147 G A SREBF2 Missense_Mutation p.V863M 0.21 tolerated(0.11) benign(0.042) TCGA-A6-6781-01 22 43570612 43570612 C T TTLL12 Silent p.T309T 0.23 TCGA-A6-6781-01 22 43924793 43924793 G A EFCAB6 Silent p.Y1482Y 0.16 TCGA-A6-6781-01 22 43950773 43950773 G A EFCAB6 Silent p.R1208R 0.23 TCGA-A6-6781-01 22 45596846 45596846 G - KIAA0930 Intron 0.24 TCGA-A6-6781-01 22 46657913 46657913 C T PKDREJ Missense_Mutation p.R436Q 0.17 tolerated(1) benign(0.019) TCGA-A6-6781-01 22 47097601 47097601 G A CERK Missense_Mutation p.T241M 0.29 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 22 50278687 50278687 G A ZBED4 Silent p.S459S 0.21 TCGA-A6-6781-01 22 50279863 50279863 C T ZBED4 Silent p.S851S 0.20 TCGA-A6-6781-01 22 50279870 50279870 C T ZBED4 Missense_Mutation p.R854W 0.19 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 22 50280882 50280882 G A ZBED4 3'UTR 0.27 TCGA-A6-6781-01 22 50470410 50470410 C T TTLL8 Missense_Mutation p.R487H 0.20 tolerated(0.07) benign(0.432) TCGA-A6-6781-01 22 50596682 50596682 C A MOV10L1 Intron 0.19 TCGA-A6-6781-01 22 50615458 50615458 C T PANX2 Missense_Mutation p.A106V 0.29 deleterious(0.04) probably_damaging(0.985) TCGA-A6-6781-01 22 50897920 50897920 C T SBF1 Missense_Mutation p.A1223T 0.11 tolerated(0.13) benign(0.005) TCGA-A6-6781-01 22 50956659 50956659 T C NCAPH2 Missense_Mutation p.S200P 0.25 tolerated(0.09) benign(0.069) TCGA-A6-6781-01 22 50965645 50965645 C A TYMP Silent p.G238G 0.32 TCGA-A6-6781-01 22 50967752 50967752 G A TYMP Missense_Mutation p.A77V 0.28 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 22 51008742 51008742 C T CPT1B Missense_Mutation p.A708T 0.31 tolerated(0.09) benign(0.045) TCGA-A6-6781-01 22 51153401 51153401 G A SHANK3 Missense_Mutation p.A747T 0.29 benign(0.033) TCGA-A6-6781-01 22 51159932 51159933 - G SHANK3 Frame_Shift_Ins p.A1243Gfs*69 0.18 TCGA-A6-6781-01 22 51176729 51176729 C T ACR Silent p.N22N 0.26 TCGA-A6-6781-01 2 101624648 101624648 C T TBC1D8 Missense_Mutation p.V1020I 0.12 tolerated(0.07) probably_damaging(0.935) TCGA-A6-6781-01 2 102984447 102984447 C T IL18R1 Missense_Mutation p.S74L 0.25 deleterious(0.05) benign(0.023) TCGA-A6-6781-01 2 103013014 103013014 C T IL18R1 Silent p.L432L 0.19 TCGA-A6-6781-01 2 103095695 103095695 G A SLC9A4 Silent p.A218A 0.24 TCGA-A6-6781-01 2 103335094 103335094 C T MFSD9 Missense_Mutation p.G404R 0.17 tolerated(0.08) possibly_damaging(0.832) TCGA-A6-6781-01 2 10560039 10560039 C T HPCAL1 Silent p.Y52Y 0.20 TCGA-A6-6781-01 2 105705441 105705441 G T MRPS9 Splice_Site p.X164_splice 0.17 TCGA-A6-6781-01 2 105959530 105959530 G A C2orf49 Silent p.T164T 0.18 TCGA-A6-6781-01 2 107029565 107029565 C T RGPD3 Silent p.K1747K 0.23 TCGA-A6-6781-01 2 110301664 110301664 C T SEPT10 3'UTR 0.29 TCGA-A6-6781-01 2 111921785 111921785 C T BCL2L11 Missense_Mutation p.R192C 0.23 deleterious(0) probably_damaging(0.991) TCGA-A6-6781-01 2 111921909 111921909 C T BCL2L11 3'UTR 0.09 TCGA-A6-6781-01 2 112942812 112942812 C - FBLN7 Frame_Shift_Del p.Q283Rfs*26 0.21 TCGA-A6-6781-01 2 113308566 113308566 G T POLR1B Missense_Mutation p.G250V 0.17 tolerated(1) benign(0.027) TCGA-A6-6781-01 2 11356304 11356304 C T ROCK2 Missense_Mutation p.A481T 0.21 tolerated(0.65) benign(0.001) TCGA-A6-6781-01 2 114391783 114391783 C T RABL2A Missense_Mutation p.T64M 0.20 deleterious(0.05) benign(0.148) TCGA-A6-6781-01 2 119915558 119915558 C T C1QL2 Silent p.P96P 0.14 TCGA-A6-6781-01 2 120097418 120097418 C T C2orf76 Missense_Mutation p.V40I 0.19 tolerated(0.19) benign(0.005) TCGA-A6-6781-01 2 120124662 120124662 C T DBI 5'Flank 0.27 TCGA-A6-6781-01 2 128250886 128250886 G A IWS1 Missense_Mutation p.R634W 0.29 deleterious(0) probably_damaging(0.996) TCGA-A6-6781-01 2 128363441 128363441 C T MYO7B Missense_Mutation p.R788W 0.18 tolerated(0.06) benign(0.015) TCGA-A6-6781-01 2 128431386 128431386 G A LIMS2 5'UTR 0.29 TCGA-A6-6781-01 2 131520251 131520251 C - AMER3 Frame_Shift_Del p.P204Rfs*62 0.19 TCGA-A6-6781-01 2 131796566 131796566 C T ARHGEF4 Silent p.V236V 0.21 TCGA-A6-6781-01 2 132021740 132021740 C T POTEE Silent p.A904A 0.14 TCGA-A6-6781-01 2 132238154 132238154 C T TUBA3D Silent p.F296F 0.20 TCGA-A6-6781-01 2 135710838 135710838 G T CCNT2 Missense_Mutation p.Q271H 0.16 tolerated(0.18) probably_damaging(0.993) TCGA-A6-6781-01 2 136360200 136360200 C T R3HDM1 5'UTR 0.23 TCGA-A6-6781-01 2 136528170 136528170 A - UBXN4 Frame_Shift_Del p.T231Lfs*16 0.17 TCGA-A6-6781-01 2 136594540 136594540 G T LCT Missense_Mutation p.P67Q 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.707) TCGA-A6-6781-01 2 138320817 138320817 T A THSD7B Missense_Mutation p.S1058R 0.16 deleterious(0.02) unknown(0) TCGA-A6-6781-01 2 141143559 141143559 A G LRP1B Silent p.P3478P 0.30 TCGA-A6-6781-01 2 149241181 149241181 T C MBD5 Intron 0.19 TCGA-A6-6781-01 2 149522715 149522715 G T EPC2 Missense_Mutation p.Q380H 0.21 deleterious(0.03) probably_damaging(0.96) TCGA-A6-6781-01 2 152273180 152273180 C T RIF1 Missense_Mutation p.P129L 0.22 deleterious(0) possibly_damaging(0.883) TCGA-A6-6781-01 2 153471425 153471426 - T FMNL2 Frame_Shift_Ins p.D377* 0.18 TCGA-A6-6781-01 2 153529111 153529111 T - PRPF40A Frame_Shift_Del p.K411Sfs*40 0.21 TCGA-A6-6781-01 2 157186374 157186374 G - NR4A2 Frame_Shift_Del p.Q109Sfs*5 0.26 TCGA-A6-6781-01 2 158974441 158974441 G - UPP2 Frame_Shift_Del p.G207Efs*2 0.16 TCGA-A6-6781-01 2 159530237 159530237 A G PKP4 Silent p.L991L 0.17 TCGA-A6-6781-01 2 16085728 16085728 C T MYCN Missense_Mutation p.R302C 0.22 deleterious(0.02) possibly_damaging(0.761) TCGA-A6-6781-01 2 160994284 160994285 - A ITGB6 Frame_Shift_Ins p.G441Wfs*51 0.08 TCGA-A6-6781-01 2 161349816 161349817 - G RBMS1 Frame_Shift_Ins p.Q20Pfs*26 0.20 TCGA-A6-6781-01 2 162267974 162267974 A - PSMD14 3'UTR 0.13 TCGA-A6-6781-01 2 162280909 162280909 T - TBR1 3'UTR 0.27 TCGA-A6-6781-01 2 163027570 163027570 G A FAP Silent p.H734H 0.15 TCGA-A6-6781-01 2 165771644 165771644 C T SLC38A11 Silent p.L220L 0.22 TCGA-A6-6781-01 2 165772468 165772468 G A SLC38A11 Silent p.D155D 0.23 TCGA-A6-6781-01 2 166032873 166032873 G T SCN3A Missense_Mutation p.P11H 0.27 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 2 166621483 166621483 G A GALNT3 Missense_Mutation p.T200M 0.23 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 166848843 166848843 G A SCN1A Missense_Mutation p.R1648C 0.14 deleterious(0) probably_damaging(0.995) TCGA-A6-6781-01 2 168106336 168106336 A G XIRP2 Missense_Mutation p.R2812G 0.21 benign(0.002) TCGA-A6-6781-01 2 169826014 169826014 C T ABCB11 Silent p.T619T 0.27 TCGA-A6-6781-01 2 170034359 170034359 G C LRP2 Missense_Mutation p.H3449Q 0.23 probably_damaging(0.999) TCGA-A6-6781-01 2 170489815 170489815 T - PPIG Intron 0.19 TCGA-A6-6781-01 2 171400435 171400435 C T MYO3B Missense_Mutation p.R1224W 0.20 tolerated_low_confidence(0.23) benign(0) TCGA-A6-6781-01 2 171509587 171509587 T - MYO3B Frame_Shift_Del p.S1330Lfs*102 0.16 TCGA-A6-6781-01 2 171574002 171574002 C T SP5 3'UTR 0.19 TCGA-A6-6781-01 2 171911651 171911651 A G TLK1 Missense_Mutation p.L194S 0.19 tolerated(0.58) benign(0.004) TCGA-A6-6781-01 2 172945069 172945069 G A METAP1D Missense_Mutation p.E315K 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 175436271 175436271 G A WIPF1 Intron 0.18 TCGA-A6-6781-01 2 175618131 175618131 A T CHRNA1 Intron 0.22 TCGA-A6-6781-01 2 17697088 17697088 A - RAD51AP2 Frame_Shift_Del p.P866Qfs*13 0.18 TCGA-A6-6781-01 2 179396693 179396693 G A TTN Silent p.R34883R 0.22 TCGA-A6-6781-01 2 179410279 179410279 C T TTN Missense_Mutation p.R31853H 0.25 TCGA-A6-6781-01 2 179419342 179419342 G A TTN Missense_Mutation p.R29578C 0.15 TCGA-A6-6781-01 2 179440435 179440435 C T TTN Missense_Mutation p.R23475H 0.29 TCGA-A6-6781-01 2 1795603 1795603 C T MYT1L 3'UTR 0.17 TCGA-A6-6781-01 2 179598188 179598188 C T TTN Missense_Mutation p.A5278T 0.33 TCGA-A6-6781-01 2 189916098 189916098 C G COL5A2 Missense_Mutation p.G960A 0.26 unknown(0) TCGA-A6-6781-01 2 190670403 190670403 C T PMS1 Missense_Mutation p.A114V 0.14 tolerated(0.14) benign(0.078) TCGA-A6-6781-01 2 191792209 191792212 GTAA - GLS Splice_Site p.X475_splice 0.13 TCGA-A6-6781-01 2 196545302 196545302 G A SLC39A10 Missense_Mutation p.R179H 0.18 tolerated(0.71) benign(0) TCGA-A6-6781-01 2 196866485 196866485 A G DNAH7 Missense_Mutation p.C363R 0.08 deleterious(0) possibly_damaging(0.822) TCGA-A6-6781-01 2 198338653 198338653 A - COQ10B 3'UTR 0.17 TCGA-A6-6781-01 2 200213812 200213812 G A SATB2 Missense_Mutation p.A262V 0.16 tolerated(0.17) benign(0.146) TCGA-A6-6781-01 2 201171294 201171294 C T SPATS2L Intron 0.25 TCGA-A6-6781-01 2 201943636 201943636 C T NDUFB3 Missense_Mutation p.H11Y 0.25 tolerated(0.14) benign(0) TCGA-A6-6781-01 2 20205624 20205624 C T MATN3 Missense_Mutation p.R224Q 0.23 tolerated(0.2) possibly_damaging(0.804) TCGA-A6-6781-01 2 202619355 202619355 G A ALS2 Missense_Mutation p.T504M 0.21 tolerated(0.31) benign(0.005) TCGA-A6-6781-01 2 206981205 206981205 C T AC007383.4 RNA 0.27 TCGA-A6-6781-01 2 207631581 207631581 A G FASTKD2 Missense_Mutation p.H55R 0.22 tolerated(0.17) benign(0.081) TCGA-A6-6781-01 2 208633117 208633117 C T FZD5 Missense_Mutation p.C116Y 0.19 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 210559503 210559503 G A MAP2 Missense_Mutation p.C870Y 0.19 deleterious(0) probably_damaging(0.981) TCGA-A6-6781-01 2 210561667 210561667 A - MAP2 Frame_Shift_Del p.T1474Qfs*14 0.10 TCGA-A6-6781-01 2 210783312 210783312 C T UNC80 Silent p.S1690S 0.21 TCGA-A6-6781-01 2 211081120 211081120 C T ACADL Missense_Mutation p.A163T 0.18 tolerated(0.31) benign(0.113) TCGA-A6-6781-01 2 216211546 216211546 C T ATIC Missense_Mutation p.A462V 0.17 tolerated(0.18) possibly_damaging(0.545) TCGA-A6-6781-01 2 217559379 217559379 G - IGFBP5 Frame_Shift_Del p.S41Afs*17 0.19 TCGA-A6-6781-01 2 218700826 218700826 C T TNS1 Missense_Mutation p.R914H 0.26 tolerated(0.31) probably_damaging(0.973) TCGA-A6-6781-01 2 218941190 218941190 A G RUFY4 Missense_Mutation p.Q450R 0.23 tolerated(0.17) benign(0.002) TCGA-A6-6781-01 2 219208226 219208226 G A PNKD Missense_Mutation p.R262Q 0.21 deleterious(0.01) possibly_damaging(0.79) TCGA-A6-6781-01 2 219503508 219503508 C T ZNF142 Missense_Mutation p.E1540K 0.33 deleterious(0.01) possibly_damaging(0.635) TCGA-A6-6781-01 2 219870810 219870810 G A CCDC108 Nonsense_Mutation p.R1619* 0.25 TCGA-A6-6781-01 2 220043136 220043141 GCCTGG - FAM134A In_Frame_Del p.G27_L28del 0.14 TCGA-A6-6781-01 2 220089246 220089246 C T ATG9A Missense_Mutation p.A283T 0.23 deleterious(0) probably_damaging(0.94) TCGA-A6-6781-01 2 220149622 220149622 G - DNAJB2 Frame_Shift_Del p.T299Pfs*54 0.20 TCGA-A6-6781-01 2 220164075 220164075 G A PTPRN Missense_Mutation p.R519W 0.16 deleterious(0) probably_damaging(0.956) TCGA-A6-6781-01 2 220313756 220313756 C - SPEG Frame_Shift_Del p.G628Vfs*92 0.25 TCGA-A6-6781-01 2 220350109 220350109 C T SPEG Missense_Mutation p.R2551W 0.27 possibly_damaging(0.881) TCGA-A6-6781-01 2 220353824 220353826 ACA - SPEG In_Frame_Del p.N2734del 0.20 TCGA-A6-6781-01 2 220476385 220476385 C T STK11IP Missense_Mutation p.R733W 0.24 deleterious(0.02) benign(0.319) TCGA-A6-6781-01 2 220500522 220500522 G A SLC4A3 Silent p.L727L 0.30 TCGA-A6-6781-01 2 223386606 223386606 G A SGPP2 Missense_Mutation p.A167T 0.19 deleterious(0) probably_damaging(0.995) TCGA-A6-6781-01 2 224760309 224760309 A G WDFY1 Silent p.L213L 0.18 TCGA-A6-6781-01 2 225761071 225761071 C T DOCK10 Silent p.Q119Q 0.24 TCGA-A6-6781-01 2 227662289 227662289 G A IRS1 Missense_Mutation p.P389L 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-A6-6781-01 2 230223247 230223247 A - DNER 3'UTR 0.17 TCGA-A6-6781-01 2 230675724 230675724 G A TRIP12 Missense_Mutation p.T650I 0.14 deleterious(0.02) possibly_damaging(0.756) TCGA-A6-6781-01 2 230914581 230914581 C T SLC16A14 Missense_Mutation p.R100H 0.16 deleterious(0) probably_damaging(0.991) TCGA-A6-6781-01 2 231120171 231120171 C T SP140 Silent p.G388G 0.17 TCGA-A6-6781-01 2 232262487 232262487 C T B3GNT7 Silent p.L19L 0.24 TCGA-A6-6781-01 2 232378337 232378337 T - LINC00471 RNA 0.21 TCGA-A6-6781-01 2 233394676 233394676 G A CHRND Missense_Mutation p.R216Q 0.26 deleterious(0.03) possibly_damaging(0.885) TCGA-A6-6781-01 2 233409588 233409588 G A CHRNG Silent p.R452R 0.27 TCGA-A6-6781-01 2 233899562 233899562 C T NEU2 Missense_Mutation p.P313L 0.22 tolerated(0.28) benign(0.411) TCGA-A6-6781-01 2 234079772 234079772 G A INPP5D Missense_Mutation p.A643T 0.22 tolerated(0.07) probably_damaging(0.952) TCGA-A6-6781-01 2 234115396 234115396 C T INPP5D 3'UTR 0.24 TCGA-A6-6781-01 2 234601919 234601919 G A UGT1A6 Missense_Mutation p.R90H 0.34 tolerated(0.58) probably_damaging(0.94) TCGA-A6-6781-01 2 234621647 234621647 G T UGT1A5 Nonsense_Mutation p.G4* 0.19 TCGA-A6-6781-01 2 234835247 234835247 G A TRPM8 Missense_Mutation p.R22Q 0.31 tolerated(0.33) benign(0.003) TCGA-A6-6781-01 2 234869576 234869576 C T TRPM8 Missense_Mutation p.R507W 0.30 deleterious(0.04) possibly_damaging(0.614) TCGA-A6-6781-01 2 234878901 234878901 C T TRPM8 Missense_Mutation p.A729V 0.23 deleterious(0.02) benign(0.091) TCGA-A6-6781-01 2 237489590 237489590 G A ACKR3 Missense_Mutation p.R161H 0.22 deleterious(0) probably_damaging(0.992) TCGA-A6-6781-01 2 237489860 237489860 G A ACKR3 Missense_Mutation p.R251Q 0.15 tolerated(0.05) benign(0.292) TCGA-A6-6781-01 2 23785190 23785190 G A KLHL29 Missense_Mutation p.G42S 0.24 tolerated_low_confidence(0.83) benign(0.002) TCGA-A6-6781-01 2 238289624 238289624 C T COL6A3 Missense_Mutation p.A611T 0.22 benign(0.153) TCGA-A6-6781-01 2 238289939 238289939 T - COL6A3 Frame_Shift_Del p.R506Gfs*4 0.17 TCGA-A6-6781-01 2 238303292 238303292 C T COL6A3 Missense_Mutation p.C216Y 0.30 benign(0.296) TCGA-A6-6781-01 2 238729805 238729806 - A RBM44 Frame_Shift_Ins p.I672Nfs*44 0.21 TCGA-A6-6781-01 2 239008996 239008996 A G ESPNL 5'UTR 0.18 TCGA-A6-6781-01 2 240066336 240066336 G A HDAC4 Missense_Mutation p.R270C 0.21 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 2 240969702 240969702 C T OR6B2 Missense_Mutation p.V49I 0.10 tolerated(1) benign(0.034) TCGA-A6-6781-01 2 240985345 240985345 C T OR6B3 Missense_Mutation p.V49I 0.15 tolerated(1) benign(0.034) TCGA-A6-6781-01 2 24098756 24098756 T - ATAD2B Frame_Shift_Del p.K307Rfs*57 0.15 TCGA-A6-6781-01 2 241664738 241664738 C T KIF1A Silent p.S1402S 0.22 TCGA-A6-6781-01 2 241700155 241700155 G - KIF1A Frame_Shift_Del p.R791Afs*30 0.27 TCGA-A6-6781-01 2 241724479 241724479 C T KIF1A Missense_Mutation p.R216H 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 241902942 241902942 C T AC104809.3 Intron 0.19 TCGA-A6-6781-01 2 242079986 242079986 C T PASK Missense_Mutation p.V127M 0.21 deleterious(0.03) probably_damaging(0.986) TCGA-A6-6781-01 2 242169308 242169308 C T HDLBP Silent p.K1220K 0.18 TCGA-A6-6781-01 2 242181886 242181886 C T HDLBP Missense_Mutation p.A720T 0.22 tolerated(0.1) benign(0.141) TCGA-A6-6781-01 2 242438198 242438198 C T STK25 Missense_Mutation p.R258Q 0.17 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 24244589 24244589 A G MFSD2B Silent p.L251L 0.24 TCGA-A6-6781-01 2 242743325 242743325 G T GAL3ST2 Missense_Mutation p.R314M 0.21 deleterious(0) probably_damaging(0.937) TCGA-A6-6781-01 2 25047358 25047358 G A ADCY3 Silent p.H875H 0.18 TCGA-A6-6781-01 2 25457174 25457174 G A DNMT3A Silent p.L905L 0.24 TCGA-A6-6781-01 2 25611185 25611185 C T DTNB Missense_Mutation p.G541S 0.22 tolerated(1) benign(0.001) TCGA-A6-6781-01 2 26437420 26437420 C T HADHA Silent p.A270A 0.26 TCGA-A6-6781-01 2 26686943 26686943 C T OTOF Silent p.A1664A 0.21 TCGA-A6-6781-01 2 26951074 26951074 G - KCNK3 Frame_Shift_Del p.G276Vfs*52 0.17 TCGA-A6-6781-01 2 27279542 27279542 G A AGBL5 Missense_Mutation p.D473N 0.24 deleterious(0) probably_damaging(0.919) TCGA-A6-6781-01 2 27305471 27305471 G A EMILIN1 Silent p.A344A 0.11 TCGA-A6-6781-01 2 27463989 27463989 C A CAD Missense_Mutation p.P1901H 0.09 deleterious(0.02) benign(0.004) TCGA-A6-6781-01 2 27480186 27480186 G - SLC30A3 Frame_Shift_Del p.H205Tfs*260 0.22 TCGA-A6-6781-01 2 28002397 28002397 G - MRPL33 3'UTR 0.21 TCGA-A6-6781-01 2 29074159 29074159 G A TRMT61B Missense_Mutation p.T364I 0.16 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 29226541 29226541 C T FAM179A Missense_Mutation p.R275C 0.25 tolerated(0.06) benign(0.002) TCGA-A6-6781-01 2 31425008 31425008 G A CAPN14 Missense_Mutation p.R136W 0.20 deleterious(0) possibly_damaging(0.806) TCGA-A6-6781-01 2 32702482 32702482 G A BIRC6 Missense_Mutation p.R2300H 0.24 probably_damaging(0.991) TCGA-A6-6781-01 2 33810247 33810247 C A FAM98A Missense_Mutation p.D385Y 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-A6-6781-01 2 3425691 3425691 C T TRAPPC12 Missense_Mutation p.R402C 0.32 deleterious(0) probably_damaging(0.974) TCGA-A6-6781-01 2 3597989 3597989 G A RNASEH1 Silent p.G161G 0.17 TCGA-A6-6781-01 2 36740822 36740822 G A CRIM1 Missense_Mutation p.R635Q 0.25 tolerated(0.16) probably_damaging(0.986) TCGA-A6-6781-01 2 36818094 36818094 C T FEZ2 Silent p.S109S 0.21 TCGA-A6-6781-01 2 39187197 39187197 C T ARHGEF33 Missense_Mutation p.P584L 0.24 tolerated(0.1) benign(0.003) TCGA-A6-6781-01 2 40392073 40392073 C T SLC8A1 Missense_Mutation p.R697H 0.16 deleterious(0) benign(0.135) TCGA-A6-6781-01 2 44428691 44428691 G A PPM1B Missense_Mutation p.R118H 0.16 tolerated(0.1) probably_damaging(0.978) TCGA-A6-6781-01 2 45789879 45789879 C T SRBD1 Missense_Mutation p.R441H 0.17 deleterious(0) probably_damaging(0.953) TCGA-A6-6781-01 2 48809319 48809319 G A STON1-GTF2A1L Missense_Mutation p.R516H 0.15 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 48896939 48896939 G A STON1-GTF2A1L Missense_Mutation p.G1057S 0.26 deleterious(0.04) possibly_damaging(0.61) TCGA-A6-6781-01 2 55253708 55253708 A G RTN4 Silent p.N509N 0.22 TCGA-A6-6781-01 2 55571580 55571580 C T CCDC88A Missense_Mutation p.R371H 0.19 deleterious(0) benign(0.134) TCGA-A6-6781-01 2 5835241 5835242 - T SOX11 3'UTR 0.16 TCGA-A6-6781-01 2 58358982 58358982 G A VRK2 Missense_Mutation p.C239Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 2 5838096 5838096 G T SOX11 3'UTR 0.07 TCGA-A6-6781-01 2 5841170 5841171 - G SOX11 3'UTR 0.22 TCGA-A6-6781-01 2 61145544 61145544 G A REL Missense_Mutation p.R219H 0.28 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 2 61417699 61417699 A - USP34 Frame_Shift_Del p.L3228* 0.19 TCGA-A6-6781-01 2 65296708 65296708 C T CEP68 Missense_Mutation p.R44C 0.24 tolerated(0.22) benign(0.004) TCGA-A6-6781-01 2 65540682 65540682 C T SPRED2 Missense_Mutation p.G404R 0.33 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 2 66662838 66662838 T C MEIS1 5'UTR 0.34 TCGA-A6-6781-01 2 66739308 66739308 C - MEIS1 Frame_Shift_Del p.S259Afs*24 0.18 TCGA-A6-6781-01 2 66798793 66798793 A - MEIS1 3'UTR 0.20 TCGA-A6-6781-01 2 70131471 70131471 C T SNRNP27 3'UTR 0.24 TCGA-A6-6781-01 2 71212048 71212048 A G ANKRD53 Missense_Mutation p.Q404R 0.26 tolerated(0.1) probably_damaging(0.987) TCGA-A6-6781-01 2 71361113 71361113 T - MPHOSPH10 Frame_Shift_Del p.F270Lfs*10 0.16 TCGA-A6-6781-01 2 7164612 7164612 C T RNF144A Missense_Mutation p.H208Y 0.08 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 73144039 73144039 G A EMX1 5'Flank 0.25 TCGA-A6-6781-01 2 74362634 74362634 T - BOLA3 3'UTR 0.20 TCGA-A6-6781-01 2 74653520 74653520 C - RTKN Frame_Shift_Del p.R515Dfs*140 0.15 TCGA-A6-6781-01 2 74655847 74655847 G A RTKN Silent p.L290L 0.21 TCGA-A6-6781-01 2 74688758 74688758 G A MOGS Missense_Mutation p.R720C 0.29 deleterious(0.04) possibly_damaging(0.773) TCGA-A6-6781-01 2 74742219 74742219 G - TLX2 Frame_Shift_Del p.A98Rfs*16 0.22 TCGA-A6-6781-01 2 74779796 74779796 G A LOXL3 Intron 0.29 TCGA-A6-6781-01 2 74781910 74781910 T - DOK1 Frame_Shift_Del p.L12Cfs*26 0.21 TCGA-A6-6781-01 2 84745105 84745105 C T DNAH6 Missense_Mutation p.T52M 0.22 tolerated_low_confidence(0.14) benign(0.003) TCGA-A6-6781-01 2 84861695 84861695 G A DNAH6 Missense_Mutation p.R1528Q 0.23 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 84880882 84880882 C T DNAH6 Missense_Mutation p.P1840S 0.25 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 2 84945499 84945499 G A DNAH6 Silent p.Q3261Q 0.17 TCGA-A6-6781-01 2 85776952 85776952 A C GGCX 3'UTR 0.30 TCGA-A6-6781-01 2 85776953 85776953 A C GGCX 3'UTR 0.32 TCGA-A6-6781-01 2 85872074 85872074 T C USP39 Silent p.N477N 0.11 TCGA-A6-6781-01 2 87240167 87240167 G A RGPD1 3'UTR 0.22 TCGA-A6-6781-01 2 88328096 88328096 C T KRCC1 5'UTR 0.22 TCGA-A6-6781-01 2 88409982 88409982 C T SMYD1 Missense_Mutation p.A475V 0.24 tolerated_low_confidence(0.1) benign(0.254) TCGA-A6-6781-01 2 89103980 89103980 G A ANKRD36BP2 RNA 0.24 TCGA-A6-6781-01 2 89247033 89247033 C T IGKV1-5 Missense_Mutation p.R46Q 0.22 tolerated(0.43) benign(0.02) TCGA-A6-6781-01 2 96810767 96810767 C T DUSP2 Silent p.V109V 0.25 TCGA-A6-6781-01 2 97357270 97357270 G A FER1L5 RNA 0.17 TCGA-A6-6781-01 2 97493856 97493856 C T CNNM3 Silent p.I570I 0.23 TCGA-A6-6781-01 2 99013441 99013441 G A CNGA3 Missense_Mutation p.R603Q 0.30 tolerated(0.07) possibly_damaging(0.557) TCGA-A6-6781-01 3 10401654 10401654 C T ATP2B2 Missense_Mutation p.V605M 0.36 deleterious(0.02) possibly_damaging(0.852) TCGA-A6-6781-01 3 108288312 108288312 C T KIAA1524 Missense_Mutation p.R346H 0.22 tolerated(1) benign(0.001) TCGA-A6-6781-01 3 108475401 108475401 C T RETNLB Silent p.S54S 0.30 TCGA-A6-6781-01 3 108819287 108819287 C T MORC1 Silent p.G97G 0.23 TCGA-A6-6781-01 3 111766777 111766777 G A TMPRSS7 Missense_Mutation p.D182N 0.20 tolerated(0.35) probably_damaging(1) TCGA-A6-6781-01 3 11301910 11301910 C T HRH1 Missense_Mutation p.S396L 0.25 deleterious(0.03) benign(0.118) TCGA-A6-6781-01 3 113513742 113513742 C T ATP6V1A Missense_Mutation p.R338C 0.37 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 3 11356964 11356964 G A ATG7 Silent p.T225T 0.25 TCGA-A6-6781-01 3 113955389 113955389 C A ZNF80 Missense_Mutation p.R178L 0.26 deleterious(0.03) possibly_damaging(0.879) TCGA-A6-6781-01 3 114069697 114069697 C T ZBTB20 Missense_Mutation p.E410K 0.29 tolerated(0.16) benign(0.024) TCGA-A6-6781-01 3 118865717 118865717 C T C3orf30 Silent p.D227D 0.30 TCGA-A6-6781-01 3 118909156 118909159 AACA G UPK1B In_Frame_Del p.Q112_Q113delinsR 0.20 TCGA-A6-6781-01 3 119101210 119101210 G A ARHGAP31 Missense_Mutation p.R168Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 3 119434451 119434451 A G MAATS1 Silent p.L181L 0.30 TCGA-A6-6781-01 3 119449190 119449190 A - MAATS1 Frame_Shift_Del p.M330Wfs*16 0.18 TCGA-A6-6781-01 3 119886504 119886504 C T GPR156 Missense_Mutation p.R607Q 0.17 tolerated(0.26) benign(0.005) TCGA-A6-6781-01 3 120363209 120363209 G - HGD Frame_Shift_Del p.T244Rfs*36 0.17 TCGA-A6-6781-01 3 121207627 121207627 G A POLQ Missense_Mutation p.A1384V 0.20 tolerated(1) benign(0) TCGA-A6-6781-01 3 121412734 121412734 T C GOLGB1 Silent p.E2212E 0.20 TCGA-A6-6781-01 3 121976017 121976017 C T CASR Missense_Mutation p.T92M 0.27 deleterious(0) probably_damaging(0.991) TCGA-A6-6781-01 3 122002834 122002834 G A CASR Missense_Mutation p.R688H 0.27 tolerated(0.11) probably_damaging(0.927) TCGA-A6-6781-01 3 122459341 122459341 T C HSPBAP1 Missense_Mutation p.S440G 0.24 tolerated(0.41) benign(0.003) TCGA-A6-6781-01 3 122630284 122630284 G A SEMA5B Intron 0.21 TCGA-A6-6781-01 3 123051434 123051434 C T ADCY5 Missense_Mutation p.A499T 0.26 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 3 124689508 124689510 TCT - HEG1 In_Frame_Del p.R1378del 0.16 TCGA-A6-6781-01 3 124716600 124716600 G A HEG1 Silent p.D1195D 0.20 TCGA-A6-6781-01 3 124802761 124802761 G C SLC12A8 Missense_Mutation p.N706K 0.22 tolerated(0.25) benign(0.012) TCGA-A6-6781-01 3 125879751 125879751 G A ALDH1L1 Silent p.H34H 0.30 TCGA-A6-6781-01 3 128350918 128350918 C A RPN1 Missense_Mutation p.W239L 0.29 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 3 129185901 129185901 C T IFT122 Silent p.D295D 0.18 TCGA-A6-6781-01 3 129267892 129267892 G A H1FOO Missense_Mutation p.A143T 0.26 tolerated(0.66) benign(0.004) TCGA-A6-6781-01 3 129278622 129278622 G A PLXND1 Missense_Mutation p.T1713M 0.22 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 3 12957130 12957130 C T IQSEC1 Silent p.V722V 0.18 TCGA-A6-6781-01 3 136221478 136221478 G A STAG1 Missense_Mutation p.R274C 0.20 deleterious(0) probably_damaging(0.993) TCGA-A6-6781-01 3 13663316 13663316 C T FBLN2 Nonsense_Mutation p.R733* 0.22 TCGA-A6-6781-01 3 138664355 138664355 G T FOXL2 3'UTR 0.47 TCGA-A6-6781-01 3 141923418 141923418 A T GK5 Intron 0.19 TCGA-A6-6781-01 3 142681278 142681278 G A PAQR9 Missense_Mutation p.P301S 0.18 tolerated(0.06) benign(0.066) TCGA-A6-6781-01 3 142775212 142775212 A - U2SURP Frame_Shift_Del p.K1005Nfs*30 0.15 TCGA-A6-6781-01 3 147128192 147128192 G A ZIC1 Missense_Mutation p.R98Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 3 14861028 14861028 C T FGD5 Silent p.C150C 0.27 TCGA-A6-6781-01 3 148890142 148890142 C T HPS3 3'UTR 0.31 TCGA-A6-6781-01 3 14963935 14963935 G T FGD5 Silent p.G1229G 0.26 TCGA-A6-6781-01 3 14965517 14965517 C T FGD5 Missense_Mutation p.R1314W 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-A6-6781-01 3 153905518 153905518 T C ARHGEF26 Missense_Mutation p.I511T 0.22 deleterious(0) possibly_damaging(0.734) TCGA-A6-6781-01 3 15452874 15452874 C A METTL6 Silent p.T248T 0.25 TCGA-A6-6781-01 3 156866116 156866116 G A CCNL1 Missense_Mutation p.R499C 0.29 deleterious(0) unknown(0) TCGA-A6-6781-01 3 160135607 160135607 C T SMC4 Missense_Mutation p.R512C 0.25 tolerated(0.06) benign(0.001) TCGA-A6-6781-01 3 160138550 160138550 A - SMC4 Frame_Shift_Del p.K628Nfs*23 0.10 TCGA-A6-6781-01 3 164908278 164908278 T C SLITRK3 Missense_Mutation p.Q114R 0.26 deleterious(0.02) probably_damaging(0.985) TCGA-A6-6781-01 3 167223102 167223102 T - WDR49 Frame_Shift_Del p.K607Nfs*9 0.15 TCGA-A6-6781-01 3 169548328 169548328 G A LRRIQ4 Missense_Mutation p.V415I 0.23 tolerated(0.18) benign(0.23) TCGA-A6-6781-01 3 169572668 169572668 C T LRRC31 Missense_Mutation p.M308I 0.19 tolerated(0.41) benign(0.003) TCGA-A6-6781-01 3 169644519 169644519 C T SAMD7 Missense_Mutation p.L157F 0.27 tolerated(0.06) benign(0.057) TCGA-A6-6781-01 3 171360630 171360630 G A PLD1 Missense_Mutation p.L865F 0.17 tolerated(0.16) benign(0.29) TCGA-A6-6781-01 3 172534577 172534577 A G ECT2 Missense_Mutation p.S869G 0.23 tolerated(0.2) benign(0) TCGA-A6-6781-01 3 172534579 172534579 C A ECT2 Missense_Mutation p.S869R 0.22 tolerated(0.06) benign(0.09) TCGA-A6-6781-01 3 178952018 178952018 A G PIK3CA Missense_Mutation p.T1025A 0.24 deleterious(0.01) probably_damaging(0.931) TCGA-A6-6781-01 3 179294684 179294684 C T ACTL6A Missense_Mutation p.H251Y 0.22 tolerated(0.08) possibly_damaging(0.901) TCGA-A6-6781-01 3 180366118 180366118 T - CCDC39 Frame_Shift_Del p.G400Vfs*15 0.16 TCGA-A6-6781-01 3 183888404 183888404 C T DVL3 Missense_Mutation p.P671L 0.24 tolerated(0.31) probably_damaging(0.913) TCGA-A6-6781-01 3 183910910 183910910 C T ABCF3 Missense_Mutation p.R591C 0.16 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 3 184060005 184060005 C T FAM131A Silent p.S159S 0.28 TCGA-A6-6781-01 3 184104656 184104656 G A CHRD Silent p.P740P 0.28 TCGA-A6-6781-01 3 184295491 184295491 C T EPHB3 Nonsense_Mutation p.Q509* 0.24 TCGA-A6-6781-01 3 186338448 186338448 C A AHSG Missense_Mutation p.P278H 0.21 tolerated(0.15) benign(0.033) TCGA-A6-6781-01 3 186839091 186839091 C T RPL39L 5'UTR 0.22 TCGA-A6-6781-01 3 188925227 188925227 G T TPRG1 Missense_Mutation p.E18D 0.26 tolerated(0.25) benign(0.023) TCGA-A6-6781-01 3 194080886 194080886 C T LRRC15 Missense_Mutation p.R302Q 0.22 tolerated(0.09) benign(0.02) TCGA-A6-6781-01 3 194118679 194118679 C T GP5 Silent p.T111T 0.26 TCGA-A6-6781-01 3 194140668 194140669 - A ATP13A3 Frame_Shift_Ins p.L1114Ffs*17 0.22 TCGA-A6-6781-01 3 194349182 194349182 G A TMEM44 Missense_Mutation p.A65V 0.34 tolerated(0.12) probably_damaging(0.916) TCGA-A6-6781-01 3 196547320 196547320 C T PAK2 Missense_Mutation p.A411V 0.21 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 3 196735528 196735528 C T MFI2 Missense_Mutation p.G584S 0.15 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 3 20017635 20017635 G A RAB5A Missense_Mutation p.A138T 0.21 tolerated(0.17) benign(0.045) TCGA-A6-6781-01 3 20113913 20113913 G A KAT2B Missense_Mutation p.S131N 0.35 tolerated(0.88) benign(0.009) TCGA-A6-6781-01 3 27352453 27352453 C A NEK10 Missense_Mutation p.S208I 0.32 tolerated(0.29) benign(0.158) TCGA-A6-6781-01 3 27431531 27431531 C T SLC4A7 Missense_Mutation p.R1075H 0.19 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 3 32031754 32031754 G T ZNF860 Missense_Mutation p.G395W 0.09 deleterious(0) possibly_damaging(0.787) TCGA-A6-6781-01 3 32932641 32932641 C T TRIM71 Missense_Mutation p.R649W 0.15 deleterious(0) probably_damaging(0.952) TCGA-A6-6781-01 3 33400824 33400824 T - FBXL2 Frame_Shift_Del p.F58Lfs*7 0.25 TCGA-A6-6781-01 3 36873092 36873092 C T TRANK1 Missense_Mutation p.R2617H 0.23 deleterious(0.02) benign(0.046) TCGA-A6-6781-01 3 36887807 36887807 C T TRANK1 Missense_Mutation p.R1664Q 0.22 deleterious(0) probably_damaging(0.992) TCGA-A6-6781-01 3 37356947 37356947 A - GOLGA4 Frame_Shift_Del p.T448Qfs*8 0.23 TCGA-A6-6781-01 3 37695226 37695226 C T ITGA9 Missense_Mutation p.R621C 0.25 tolerated(0.07) possibly_damaging(0.846) TCGA-A6-6781-01 3 38593037 38593037 G A SCN5A Missense_Mutation p.S1609L 0.20 deleterious(0.04) benign(0.247) TCGA-A6-6781-01 3 42916000 42916000 C T CYP8B1 Missense_Mutation p.V437I 0.15 tolerated(0.22) benign(0.045) TCGA-A6-6781-01 3 43408324 43408324 C - ANO10 3'UTR 0.33 TCGA-A6-6781-01 3 44409042 44409042 C T TCAIM Silent p.I138I 0.27 TCGA-A6-6781-01 3 46399194 46399194 G C CCR2 Missense_Mutation p.G59A 0.21 deleterious(0) probably_damaging(0.993) TCGA-A6-6781-01 3 47037015 47037015 G A NBEAL2 Missense_Mutation p.R597Q 0.24 deleterious(0) possibly_damaging(0.836) TCGA-A6-6781-01 3 47041376 47041376 C T NBEAL2 Intron 0.30 TCGA-A6-6781-01 3 4718327 4718327 G A ITPR1 Missense_Mutation p.V922M 0.12 tolerated(0.3) probably_damaging(0.998) TCGA-A6-6781-01 3 48462361 48462361 G A PLXNB1 Silent p.Y605Y 0.22 TCGA-A6-6781-01 3 48605318 48605318 G A COL7A1 Missense_Mutation p.R2628W 0.21 probably_damaging(1) TCGA-A6-6781-01 3 48670410 48670410 C T SLC26A6 Missense_Mutation p.V144M 0.17 deleterious(0) probably_damaging(0.98) TCGA-A6-6781-01 3 48725721 48725721 C A IP6K2 Missense_Mutation p.E422D 0.17 tolerated(0.64) benign(0.001) TCGA-A6-6781-01 3 49052898 49052898 G A WDR6 3'UTR 0.17 TCGA-A6-6781-01 3 49201475 49201475 C T CCDC71 Missense_Mutation p.R56Q 0.30 tolerated(0.05) possibly_damaging(0.625) TCGA-A6-6781-01 3 49459684 49459684 C T AMT Silent p.P37P 0.25 TCGA-A6-6781-01 3 49842010 49842010 C T FAM212A Missense_Mutation p.R152W 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 3 49934243 49934243 C - MST1R Frame_Shift_Del p.G755Vfs*19 0.13 TCGA-A6-6781-01 3 49940447 49940447 A G MST1R Missense_Mutation p.V199A 0.20 deleterious(0.05) benign(0.042) TCGA-A6-6781-01 3 50220141 50220143 CTT - SEMA3F In_Frame_Del p.F279del 0.22 TCGA-A6-6781-01 3 50295029 50295029 G A GNAI2 Silent p.T325T 0.32 TCGA-A6-6781-01 3 50416555 50416555 C T CACNA2D2 Missense_Mutation p.V410I 0.12 tolerated(1) benign(0.053) TCGA-A6-6781-01 3 50417431 50417431 C T CACNA2D2 Silent p.S287S 0.27 TCGA-A6-6781-01 3 50617832 50617832 G A HEMK1 Missense_Mutation p.R334Q 0.19 tolerated(1) benign(0) TCGA-A6-6781-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.35 TCGA-A6-6781-01 3 51671461 51671461 C T RAD54L2 Missense_Mutation p.R542C 0.17 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 3 51672221 51672221 C T RAD54L2 Missense_Mutation p.R582W 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 3 51718456 51718456 G A TEX264 Missense_Mutation p.V96M 0.20 deleterious(0) probably_damaging(0.954) TCGA-A6-6781-01 3 51990534 51990534 T A GPR62 Missense_Mutation p.L289Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 3 51990546 51990546 T C GPR62 Missense_Mutation p.L293P 0.20 deleterious(0) probably_damaging(0.993) TCGA-A6-6781-01 3 52003637 52003637 G - ABHD14B Intron 0.20 TCGA-A6-6781-01 3 52015179 52015179 C T ABHD14A 3'UTR 0.56 TCGA-A6-6781-01 3 52257551 52257551 C T TLR9 Missense_Mutation p.A415T 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 3 52258318 52258318 C T TLR9 Missense_Mutation p.R159H 0.24 tolerated_low_confidence(0.58) benign(0.001) TCGA-A6-6781-01 3 52366387 52366387 G A DNAH1 Silent p.T421T 0.19 TCGA-A6-6781-01 3 52428536 52428536 C T DNAH1 Missense_Mutation p.P3561L 0.28 probably_damaging(1) TCGA-A6-6781-01 3 52429406 52429406 C A DNAH1 Missense_Mutation p.A3684D 0.23 probably_damaging(0.962) TCGA-A6-6781-01 3 52448585 52448585 C T PHF7 Silent p.S56S 0.19 TCGA-A6-6781-01 3 52469643 52469643 C T SEMA3G Silent p.T775T 0.24 TCGA-A6-6781-01 3 52474993 52474993 C T SEMA3G Silent p.S295S 0.18 TCGA-A6-6781-01 3 52537536 52537536 G T STAB1 Missense_Mutation p.V291L 0.23 tolerated(0.5) benign(0.003) TCGA-A6-6781-01 3 52547151 52547152 - T STAB1 Frame_Shift_Ins p.L1057Sfs*33 0.23 TCGA-A6-6781-01 3 52562903 52562903 G A NT5DC2 Missense_Mutation p.R156C 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 3 52745800 52745800 T A NEK4 Missense_Mutation p.N840I 0.23 deleterious(0.01) possibly_damaging(0.786) TCGA-A6-6781-01 3 53213676 53213676 C T PRKCD Missense_Mutation p.R67C 0.25 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 3 53217164 53217164 G A PRKCD Missense_Mutation p.C200Y 0.23 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 3 53326334 53326334 T C DCP1A Missense_Mutation p.N383S 0.19 tolerated(0.56) benign(0.019) TCGA-A6-6781-01 3 53835415 53835415 C T CACNA1D Missense_Mutation p.H1811Y 0.28 tolerated_low_confidence(1) benign(0.044) TCGA-A6-6781-01 3 53853612 53853612 G A CHDH Missense_Mutation p.P404S 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-A6-6781-01 3 54537568 54537569 - T CACNA2D3 Frame_Shift_Ins p.L146Ffs*13 0.16 TCGA-A6-6781-01 3 54596865 54596865 C G CACNA2D3 Missense_Mutation p.L195V 0.20 deleterious(0) probably_damaging(0.988) TCGA-A6-6781-01 3 56763137 56763137 G A ARHGEF3 3'UTR 0.25 TCGA-A6-6781-01 3 58067394 58067394 C T FLNB Silent p.D226D 0.19 TCGA-A6-6781-01 3 58139201 58139201 G A FLNB Missense_Mutation p.R2187Q 0.22 deleterious(0.03) possibly_damaging(0.746) TCGA-A6-6781-01 3 58156440 58156440 G - FLNB Frame_Shift_Del p.E2620Rfs*? 0.24 TCGA-A6-6781-01 3 58516206 58516206 G A ACOX2 Missense_Mutation p.R327W 0.21 deleterious(0) benign(0.339) TCGA-A6-6781-01 3 62358580 62358580 G A FEZF2 5'UTR 0.19 TCGA-A6-6781-01 3 62522164 62522164 G A CADPS Missense_Mutation p.R687C 0.19 deleterious(0.01) possibly_damaging(0.689) TCGA-A6-6781-01 3 64085134 64085134 G A PRICKLE2 Missense_Mutation p.R710W 0.23 deleterious(0.01) possibly_damaging(0.724) TCGA-A6-6781-01 3 64640052 64640052 C T ADAMTS9 Silent p.T431T 0.22 TCGA-A6-6781-01 3 65346753 65346753 G A MAGI1 Intron 0.24 TCGA-A6-6781-01 3 75472124 75472124 G A FAM86DP RNA 0.24 TCGA-A6-6781-01 3 7621026 7621026 C T GRM7 Silent p.T811T 0.18 TCGA-A6-6781-01 3 78708883 78708883 G A ROBO1 Nonsense_Mutation p.Q799* 0.17 TCGA-A6-6781-01 3 81692139 81692139 C T GBE1 Missense_Mutation p.R262H 0.24 deleterious(0) probably_damaging(0.986) TCGA-A6-6781-01 3 8590465 8590465 C T LMCD1 Missense_Mutation p.A200V 0.29 deleterious(0.02) probably_damaging(0.98) TCGA-A6-6781-01 3 9517299 9517299 C A SETD5 Missense_Mutation p.P1285T 0.26 tolerated(1) benign(0.001) TCGA-A6-6781-01 3 9775999 9775999 C T BRPF1 Missense_Mutation p.R59C 0.26 deleterious(0) probably_damaging(0.988) TCGA-A6-6781-01 3 9776142 9776142 C T BRPF1 Silent p.R106R 0.15 TCGA-A6-6781-01 3 97851623 97851623 T C OR5H1 Missense_Mutation p.F28L 0.04 deleterious(0.01) benign(0.32) TCGA-A6-6781-01 3 9803358 9803358 C T CAMK1 Silent p.P171P 0.38 TCGA-A6-6781-01 3 9821932 9821932 C T TADA3 3'UTR 0.28 TCGA-A6-6781-01 3 9871039 9871039 G A TTLL3 Missense_Mutation p.R648H 0.19 tolerated(0.1) benign(0.045) TCGA-A6-6781-01 4 100534204 100534204 C T MTTP Silent p.N708N 0.30 TCGA-A6-6781-01 4 10446373 10446373 A G ZNF518B Missense_Mutation p.L527S 0.21 tolerated(0.44) benign(0.005) TCGA-A6-6781-01 4 106162869 106162869 C T TET2 Intron 0.24 TCGA-A6-6781-01 4 107173155 107173155 C T TBCK Silent p.S155S 0.20 TCGA-A6-6781-01 4 11401176 11401176 G A HS3ST1 Missense_Mutation p.R152C 0.20 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 4 119653994 119653994 C T SEC24D Missense_Mutation p.S857N 0.32 deleterious(0.01) benign(0.074) TCGA-A6-6781-01 4 1209904 1209904 G A CTBP1 Missense_Mutation p.R213W 0.23 deleterious(0) probably_damaging(0.948) TCGA-A6-6781-01 4 1245191 1245191 G A CTBP1 5'Flank 0.23 TCGA-A6-6781-01 4 1245565 1245565 C T CTBP1 5'Flank 0.16 TCGA-A6-6781-01 4 128814741 128814741 T C PLK4 Missense_Mutation p.F799S 0.19 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 4 128930277 128930277 C T C4orf29 Nonsense_Mutation p.R125* 0.27 TCGA-A6-6781-01 4 135121111 135121111 C T PABPC4L Missense_Mutation p.R413H 0.21 deleterious(0.03) benign(0.017) TCGA-A6-6781-01 4 13602932 13602932 G A BOD1L1 Silent p.D1864D 0.14 TCGA-A6-6781-01 4 139964271 139964271 C T CCRN4L Silent p.L78L 0.18 TCGA-A6-6781-01 4 141578865 141578865 G A TBC1D9 Silent p.L675L 0.23 TCGA-A6-6781-01 4 143191849 143191849 G A INPP4B Silent p.A194A 0.29 TCGA-A6-6781-01 4 145627713 145627713 G A HHIP Missense_Mutation p.A288T 0.17 tolerated(0.06) possibly_damaging(0.836) TCGA-A6-6781-01 4 147227086 147227086 T C SLC10A7 Missense_Mutation p.I183V 0.17 tolerated(0.64) benign(0.005) TCGA-A6-6781-01 4 149357343 149357343 G T NR3C2 Missense_Mutation p.P224T 0.15 tolerated_low_confidence(1) benign(0) TCGA-A6-6781-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.18 TCGA-A6-6781-01 4 155411278 155411278 C T DCHS2 Silent p.R410R 0.21 TCGA-A6-6781-01 4 155457820 155457820 A - PLRG1 3'UTR 0.09 TCGA-A6-6781-01 4 155458569 155458569 C T PLRG1 Missense_Mutation p.A452T 0.22 tolerated(1) benign(0.111) TCGA-A6-6781-01 4 155507209 155507209 G A FGA Missense_Mutation p.R458C 0.27 deleterious(0) probably_damaging(0.987) TCGA-A6-6781-01 4 155531235 155531235 A G FGG Silent p.H172H 0.07 TCGA-A6-6781-01 4 15689310 15689310 G T FAM200B Missense_Mutation p.S237I 0.21 deleterious(0.01) possibly_damaging(0.549) TCGA-A6-6781-01 4 157694008 157694008 G - PDGFC Frame_Shift_Del p.P178Lfs*13 0.14 TCGA-A6-6781-01 4 159156650 159156650 C T TMEM144 Missense_Mutation p.R186C 0.17 deleterious(0) possibly_damaging(0.568) TCGA-A6-6781-01 4 160260388 160260388 G A RAPGEF2 Missense_Mutation p.A645T 0.24 tolerated(0.16) benign(0.012) TCGA-A6-6781-01 4 164050212 164050212 G - NAF1 Frame_Shift_Del p.P441Hfs*7 0.31 TCGA-A6-6781-01 4 167656149 167656149 C A SPOCK3 Nonsense_Mutation p.E412* 0.18 TCGA-A6-6781-01 4 170641060 170641060 G A CLCN3 Silent p.A815A 0.18 TCGA-A6-6781-01 4 175184113 175184113 C T FBXO8 Missense_Mutation p.R44H 0.23 tolerated_low_confidence(0.09) benign(0.306) TCGA-A6-6781-01 4 183714087 183714087 A G TENM3 Missense_Mutation p.K2088E 0.15 deleterious(0.02) possibly_damaging(0.636) TCGA-A6-6781-01 4 183959449 183959449 G A FAM92A1P2 RNA 0.20 TCGA-A6-6781-01 4 186508725 186508725 G A SORBS2 3'UTR 0.18 TCGA-A6-6781-01 4 187540997 187540997 G A FAT1 Missense_Mutation p.P2248L 0.25 probably_damaging(0.999) TCGA-A6-6781-01 4 187557264 187557264 A G FAT1 Silent p.T1366T 0.22 TCGA-A6-6781-01 4 189061068 189061068 G T TRIML1 Missense_Mutation p.S119I 0.23 tolerated(0.2) benign(0.303) TCGA-A6-6781-01 4 189064958 189064958 G A TRIML1 Intron 0.10 TCGA-A6-6781-01 4 25678049 25678049 C T SLC34A2 Missense_Mutation p.P584L 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 4 26483140 26483140 C T CCKAR 3'UTR 0.14 TCGA-A6-6781-01 4 2906653 2906653 C T ADD1 Missense_Mutation p.R442W 0.18 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 4 31144216 31144216 G A PCDH7 Silent p.Q1171Q 0.22 TCGA-A6-6781-01 4 3156043 3156043 C - HTT Frame_Shift_Del p.P1176Lfs*3 0.18 TCGA-A6-6781-01 4 3451017 3451017 C T HGFAC Silent p.Y613Y 0.28 TCGA-A6-6781-01 4 3494970 3494970 C - DOK7 Frame_Shift_Del p.S422Hfs*34 0.24 TCGA-A6-6781-01 4 3495068 3495068 G A DOK7 Missense_Mutation p.R452Q 0.28 tolerated_low_confidence(0.57) benign(0.003) TCGA-A6-6781-01 4 3769842 3769842 G - ADRA2C 3'UTR 0.17 TCGA-A6-6781-01 4 38798694 38798694 C T TLR1 Missense_Mutation p.V587I 0.30 tolerated(0.55) benign(0.121) TCGA-A6-6781-01 4 3949667 3949667 G - FAM86EP RNA 0.26 TCGA-A6-6781-01 4 41984183 41984183 G A DCAF4L1 Missense_Mutation p.R125Q 0.18 tolerated(0.13) benign(0.435) TCGA-A6-6781-01 4 41987913 41987913 G A DCAF4L1 3'UTR 0.21 TCGA-A6-6781-01 4 42551051 42551051 A G ATP8A1 Missense_Mutation p.L544P 0.23 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 4 44680574 44680574 A - GUF1 5'UTR 0.29 TCGA-A6-6781-01 4 4543700 4543700 G A STX18 5'UTR 0.18 TCGA-A6-6781-01 4 47514699 47514699 G T ATP10D Nonsense_Mutation p.G48* 0.22 TCGA-A6-6781-01 4 47647134 47647134 G T CORIN Missense_Mutation p.P641T 0.18 tolerated(0.15) possibly_damaging(0.792) TCGA-A6-6781-01 4 47647195 47647196 - TC CORIN Frame_Shift_Ins p.D620Efs*13 0.26 TCGA-A6-6781-01 4 48514651 48514651 C T FRYL Silent p.P2664P 0.25 TCGA-A6-6781-01 4 48588672 48588672 T C FRYL Missense_Mutation p.M572V 0.24 deleterious(0.01) possibly_damaging(0.635) TCGA-A6-6781-01 4 5418656 5418656 A G STK32B Missense_Mutation p.Y186C 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 4 54876128 54876132 AAAAC - CHIC2 3'UTR 0.31 TCGA-A6-6781-01 4 55603440 55603441 - A KIT Frame_Shift_Ins p.N933Kfs*116 0.17 TCGA-A6-6781-01 4 5687096 5687096 C T EVC2 Splice_Site p.X272_splice 0.23 TCGA-A6-6781-01 4 57333820 57333820 G - SRP72 Frame_Shift_Del p.V9Cfs*10 0.09 TCGA-A6-6781-01 4 57829751 57829751 G A NOA1 Silent p.T654T 0.26 TCGA-A6-6781-01 4 6064099 6064099 G A JAKMIP1 Silent p.R500R 0.22 TCGA-A6-6781-01 4 6296908 6296908 C T WFS1 Missense_Mutation p.R285C 0.10 deleterious(0.01) possibly_damaging(0.857) TCGA-A6-6781-01 4 6576930 6576930 C T MAN2B2 5'UTR 0.12 TCGA-A6-6781-01 4 6612956 6612956 C T MAN2B2 Silent p.S838S 0.33 TCGA-A6-6781-01 4 66231651 66231651 T C EPHA5 Silent p.A683A 0.19 TCGA-A6-6781-01 4 68406764 68406764 G A CENPC Missense_Mutation p.R24C 0.21 deleterious(0) possibly_damaging(0.586) TCGA-A6-6781-01 4 69696412 69696412 C T UGT2B10 Missense_Mutation p.R468C 0.24 deleterious(0.02) benign(0.126) TCGA-A6-6781-01 4 69974041 69974041 G A UGT2B7 Splice_Site p.X437_splice 0.24 TCGA-A6-6781-01 4 71200898 71200898 G A CABS1 Missense_Mutation p.V48I 0.26 tolerated(1) benign(0.001) TCGA-A6-6781-01 4 71508515 71508515 T C ENAM Missense_Mutation p.W458R 0.18 deleterious(0.02) benign(0.037) TCGA-A6-6781-01 4 72897734 72897734 G A NPFFR2 Missense_Mutation p.R39H 0.07 tolerated_low_confidence(0.14) benign(0) TCGA-A6-6781-01 4 74607725 74607725 G T IL8 Missense_Mutation p.R87M 0.22 tolerated(0.12) benign(0.033) TCGA-A6-6781-01 4 75167509 75167509 A - MTHFD2L Frame_Shift_Del p.I345Sfs*48 0.18 TCGA-A6-6781-01 4 755103 755103 C T PCGF3 Missense_Mutation p.R167C 0.35 deleterious(0) possibly_damaging(0.818) TCGA-A6-6781-01 4 77095377 77095377 G A SCARB2 Missense_Mutation p.T305M 0.20 tolerated(0.06) benign(0.108) TCGA-A6-6781-01 4 77817261 77817262 - GG SOWAHB Frame_Shift_Ins p.H581Pfs*14 0.21 TCGA-A6-6781-01 4 7783256 7783256 C T AFAP1 Silent p.P543P 0.19 TCGA-A6-6781-01 4 8416044 8416044 G A ACOX3 Missense_Mutation p.T173I 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-A6-6781-01 4 85676503 85676503 G A WDFY3 Silent p.S1825S 0.13 TCGA-A6-6781-01 4 861066 861066 G - GAK Frame_Shift_Del p.G851Afs*94 0.16 TCGA-A6-6781-01 4 862379 862379 C T GAK Silent p.P781P 0.13 TCGA-A6-6781-01 4 87968101 87968101 C T AFF1 Silent p.H138H 0.16 TCGA-A6-6781-01 4 88580621 88580621 A G DMP1 Silent p.S58S 0.21 TCGA-A6-6781-01 4 88995975 88995975 G A PKD2 Missense_Mutation p.R845Q 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-A6-6781-01 4 89619023 89619023 C T NAP1L5 5'UTR 0.21 TCGA-A6-6781-01 4 961550 961550 A G DGKQ Silent p.G284G 0.14 TCGA-A6-6781-01 4 9785349 9785349 G C DRD5 3'UTR 0.30 TCGA-A6-6781-01 4 9785363 9785381 AAATGATACTTGGTCCTTA TGATACTTGGTCCTT DRD5 3'UTR 0.16 TCGA-A6-6781-01 4 9785381 9785381 A - DRD5 3'UTR 0.14 TCGA-A6-6781-01 4 9785421 9785421 G T DRD5 3'UTR 0.22 TCGA-A6-6781-01 4 9982304 9982304 C T SLC2A9 Missense_Mutation p.R198H 0.15 deleterious(0) probably_damaging(0.994) TCGA-A6-6781-01 4 99850312 99850312 A - EIF4E 5'Flank 0.20 TCGA-A6-6781-01 5 101748824 101748824 G A SLCO6A1 Missense_Mutation p.T499M 0.23 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 5 102513642 102513642 T - PPIP5K2 Frame_Shift_Del p.L906Cfs*40 0.15 TCGA-A6-6781-01 5 10258340 10258340 C T CCT5 Silent p.G216G 0.32 TCGA-A6-6781-01 5 107717226 107717226 C T FBXL17 Missense_Mutation p.R56H 0.16 tolerated_low_confidence(0.17) unknown(0) TCGA-A6-6781-01 5 108203550 108203550 G A FER Silent p.A188A 0.04 TCGA-A6-6781-01 5 110097277 110097277 A T SLC25A46 Missense_Mutation p.D351V 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 5 110819771 110819771 C T CAMK4 Silent p.S343S 0.27 TCGA-A6-6781-01 5 112170666 112170666 G A APC Missense_Mutation p.V588I 0.16 benign(0.024) TCGA-A6-6781-01 5 1213682 1213682 G A SLC6A19 Silent p.T256T 0.15 TCGA-A6-6781-01 5 122135514 122135514 G A SNX2 Missense_Mutation p.M118I 0.24 tolerated(0.55) benign(0.001) TCGA-A6-6781-01 5 123983003 123983003 G A ZNF608 Missense_Mutation p.T1025M 0.15 tolerated(0.08) benign(0.161) TCGA-A6-6781-01 5 124079984 124079984 C - ZNF608 Frame_Shift_Del p.H234Tfs*49 0.30 TCGA-A6-6781-01 5 126250723 126250723 G A MARCH3 Missense_Mutation p.R98W 0.19 deleterious(0) possibly_damaging(0.832) TCGA-A6-6781-01 5 126792865 126792865 G A MEGF10 Missense_Mutation p.R1093H 0.19 tolerated(0.23) benign(0) TCGA-A6-6781-01 5 1272345 1272345 G A TERT Silent p.H779H 0.08 TCGA-A6-6781-01 5 127714490 127714490 C A FBN2 Missense_Mutation p.R566M 0.26 tolerated(0.18) possibly_damaging(0.535) TCGA-A6-6781-01 5 130766854 130766854 A - RAPGEF6 Frame_Shift_Del p.L1396* 0.18 TCGA-A6-6781-01 5 131324551 131324551 A G ACSL6 Missense_Mutation p.V200A 0.17 deleterious(0.01) possibly_damaging(0.681) TCGA-A6-6781-01 5 131347231 131347231 G T ACSL6 Missense_Mutation p.L6I 0.20 deleterious_low_confidence(0) benign(0.047) TCGA-A6-6781-01 5 131630891 131630891 G A SLC22A4 Intron 0.23 TCGA-A6-6781-01 5 131719864 131719864 G A SLC22A5 Missense_Mutation p.V175M 0.28 tolerated(0.07) benign(0.39) TCGA-A6-6781-01 5 1318506 1318506 G A CLPTM1L Missense_Mutation p.T532M 0.28 deleterious(0.03) benign(0.001) TCGA-A6-6781-01 5 132037790 132037790 G A KIF3A Missense_Mutation p.R598W 0.35 deleterious(0.03) benign(0.009) TCGA-A6-6781-01 5 132070092 132070093 TC - KIF3A Frame_Shift_Del p.K29Ifs*12 0.18 TCGA-A6-6781-01 5 132197079 132197079 A - GDF9 3'UTR 0.14 TCGA-A6-6781-01 5 132270083 132270083 C T AFF4 Missense_Mutation p.R225H 0.27 tolerated(0.08) probably_damaging(0.998) TCGA-A6-6781-01 5 133536147 133536147 C T PPP2CA Missense_Mutation p.R206H 0.24 tolerated(0.13) benign(0.005) TCGA-A6-6781-01 5 134153372 134153374 GAA - DDX46 In_Frame_Del p.E935del 0.20 TCGA-A6-6781-01 5 134195054 134195054 T - C5orf24 3'UTR 0.12 TCGA-A6-6781-01 5 13692211 13692211 A G DNAH5 Missense_Mutation p.I4586T 0.28 benign(0.415) TCGA-A6-6781-01 5 136983339 136983339 C T KLHL3 Intron 0.15 TCGA-A6-6781-01 5 137089341 137089341 G A HNRNPA0 Missense_Mutation p.R139C 0.34 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 5 137243583 137243584 - T PKD2L2 Frame_Shift_Ins p.A379Cfs*12 0.19 TCGA-A6-6781-01 5 137426446 137426446 C T WNT8A Missense_Mutation p.A247V 0.24 tolerated(0.14) benign(0.233) TCGA-A6-6781-01 5 137721891 137721891 C T KDM3B Nonsense_Mutation p.R321* 0.19 TCGA-A6-6781-01 5 137801409 137801409 C - EGR1 5'UTR 0.24 TCGA-A6-6781-01 5 13830840 13830840 C - DNAH5 Frame_Shift_Del p.G1976Efs*78 0.32 TCGA-A6-6781-01 5 138643994 138643994 A G MATR3 Missense_Mutation p.D297G 0.06 deleterious(0.01) probably_damaging(0.971) TCGA-A6-6781-01 5 13865950 13865950 C T DNAH5 Silent p.L1394L 0.21 TCGA-A6-6781-01 5 139222078 139222078 C - PSD2 3'UTR 0.30 TCGA-A6-6781-01 5 139507298 139507298 C A IGIP 5'UTR 0.20 TCGA-A6-6781-01 5 140023473 140023473 T C TMCO6 Missense_Mutation p.F343L 0.29 tolerated(0.3) benign(0.297) TCGA-A6-6781-01 5 140024972 140024972 G A NDUFA2 3'UTR 0.60 TCGA-A6-6781-01 5 140025099 140025099 T - NDUFA2 3'UTR 0.22 TCGA-A6-6781-01 5 140188134 140188134 G A PCDHA4 Silent p.A454A 0.28 TCGA-A6-6781-01 5 140222188 140222188 C T PCDHA8 Missense_Mutation p.R428W 0.23 deleterious_low_confidence(0.04) benign(0.06) TCGA-A6-6781-01 5 140228773 140228773 G A PCDHA9 Silent p.T231T 0.12 TCGA-A6-6781-01 5 140516870 140516870 G A PCDHB5 Silent p.A618A 0.28 TCGA-A6-6781-01 5 140565609 140565609 A - PCDHB16 3'UTR 0.23 TCGA-A6-6781-01 5 140595354 140595354 C T PCDHB13 Silent p.D553D 0.22 TCGA-A6-6781-01 5 140735006 140735006 G A PCDHGA4 Missense_Mutation p.R80H 0.31 deleterious_low_confidence(0.03) probably_damaging(0.961) TCGA-A6-6781-01 5 140744091 140744091 G A PCDHGA5 Missense_Mutation p.R65H 0.27 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-A6-6781-01 5 140750222 140750222 C T PCDHGB3 Silent p.S87S 0.16 TCGA-A6-6781-01 5 140763075 140763075 G T PCDHGA7 Missense_Mutation p.E203D 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-A6-6781-01 5 140768919 140768919 A G PCDHGB4 Missense_Mutation p.M490V 0.25 tolerated(1) benign(0) TCGA-A6-6781-01 5 140769309 140769309 C T PCDHGB4 Missense_Mutation p.R620C 0.32 deleterious(0.01) possibly_damaging(0.839) TCGA-A6-6781-01 5 140788034 140788034 C T PCDHGB6 Nonsense_Mutation p.R89* 0.24 TCGA-A6-6781-01 5 140802135 140802135 C T PCDHGA11 Silent p.N447N 0.24 TCGA-A6-6781-01 5 140802463 140802463 A G PCDHGA11 Missense_Mutation p.N557D 0.19 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-A6-6781-01 5 141335044 141335044 G A PCDH12 Silent p.V791V 0.29 TCGA-A6-6781-01 5 141694017 141694017 G A SPRY4 Silent p.C242C 0.32 TCGA-A6-6781-01 5 1422127 1422127 C T SLC6A3 Missense_Mutation p.R219H 0.20 deleterious(0) probably_damaging(0.933) TCGA-A6-6781-01 5 142779374 142779374 T C NR3C1 Missense_Mutation p.Q344R 0.23 tolerated(0.08) possibly_damaging(0.794) TCGA-A6-6781-01 5 143164 143164 G A PLEKHG4B Missense_Mutation p.V138I 0.21 tolerated(0.2) benign(0.057) TCGA-A6-6781-01 5 14487619 14487619 C G TRIO Silent p.G2294G 0.22 TCGA-A6-6781-01 5 14488049 14488049 C T TRIO Missense_Mutation p.R2438C 0.15 unknown(0) TCGA-A6-6781-01 5 14678871 14678871 C T FAM105B Missense_Mutation p.T104M 0.23 deleterious(0.02) benign(0.025) TCGA-A6-6781-01 5 147051294 147051294 G T JAKMIP2 Missense_Mutation p.L26I 0.19 deleterious(0) probably_damaging(0.969) TCGA-A6-6781-01 5 149011890 149011890 G A ARHGEF37 3'UTR 0.26 TCGA-A6-6781-01 5 149416391 149416391 G A HMGXB3 Missense_Mutation p.V726M 0.23 tolerated(0.15) benign(0.426) TCGA-A6-6781-01 5 149755424 149755424 G A TCOF1 Silent p.S615S 0.19 TCGA-A6-6781-01 5 150029413 150029413 C A SYNPO Missense_Mutation p.P770T 0.23 deleterious(0) possibly_damaging(0.864) TCGA-A6-6781-01 5 150030857 150030857 C T SYNPO 3'UTR 0.22 TCGA-A6-6781-01 5 151183644 151183644 C T G3BP1 Missense_Mutation p.R465W 0.38 deleterious_low_confidence(0) benign(0.165) TCGA-A6-6781-01 5 156667161 156667161 A T ITK Missense_Mutation p.D314V 0.20 deleterious(0.01) benign(0.158) TCGA-A6-6781-01 5 156899666 156899666 G A NIPAL4 Missense_Mutation p.V367M 0.16 tolerated(0.49) benign(0.303) TCGA-A6-6781-01 5 157161677 157161677 A G AC026407.1 Missense_Mutation p.W17R 0.32 unknown(0) TCGA-A6-6781-01 5 157182239 157182239 C T LSM11 Silent p.G350G 0.21 TCGA-A6-6781-01 5 15928278 15928278 G A FBXL7 Missense_Mutation p.R136H 0.26 tolerated(0.1) possibly_damaging(0.871) TCGA-A6-6781-01 5 15935367 15935367 C T FBXL7 Intron 0.16 TCGA-A6-6781-01 5 159665678 159665678 C T FABP6 3'UTR 0.23 TCGA-A6-6781-01 5 160042950 160042950 G A ATP10B Missense_Mutation p.R850W 0.23 deleterious(0.01) possibly_damaging(0.849) TCGA-A6-6781-01 5 16680190 16680190 C T MYO10 Missense_Mutation p.G1470R 0.18 deleterious(0.02) probably_damaging(1) TCGA-A6-6781-01 5 168250290 168250290 T C SLIT3 Missense_Mutation p.N202D 0.22 tolerated(0.07) probably_damaging(0.996) TCGA-A6-6781-01 5 172750373 172750373 C T STC2 Missense_Mutation p.G119S 0.20 tolerated(0.71) benign(0.007) TCGA-A6-6781-01 5 17275737 17275737 G A BASP1 Missense_Mutation p.G138R 0.24 tolerated(0.54) unknown(0) TCGA-A6-6781-01 5 175956093 175956093 T G RNF44 Splice_Site p.X413_splice 0.23 TCGA-A6-6781-01 5 176026161 176026161 C T GPRIN1 Silent p.T225T 0.12 TCGA-A6-6781-01 5 176675253 176675253 C T NSD1 Silent p.P1523P 0.23 TCGA-A6-6781-01 5 176919421 176919421 C T PDLIM7 Silent p.Q88Q 0.19 TCGA-A6-6781-01 5 177310858 177310858 C T RP11-423H2.1 RNA 0.10 TCGA-A6-6781-01 5 179251037 179251037 C T SQSTM1 Missense_Mutation p.R161W 0.16 deleterious(0) possibly_damaging(0.67) TCGA-A6-6781-01 5 179306143 179306143 G A TBC1D9B Missense_Mutation p.R491C 0.24 deleterious(0) possibly_damaging(0.901) TCGA-A6-6781-01 5 179320380 179320380 C T TBC1D9B Missense_Mutation p.R222H 0.24 tolerated(0.1) possibly_damaging(0.879) TCGA-A6-6781-01 5 179331766 179331766 G A TBC1D9B Silent p.R55R 0.32 TCGA-A6-6781-01 5 180166173 180166173 C T OR2Y1 Missense_Mutation p.V296M 0.27 tolerated(0.11) benign(0.105) TCGA-A6-6781-01 5 180219521 180219521 C T MGAT1 Missense_Mutation p.A151T 0.25 benign(0.004) TCGA-A6-6781-01 5 180474991 180474991 G A BTNL9 Silent p.P58P 0.22 TCGA-A6-6781-01 5 192188 192188 G A LRRC14B Missense_Mutation p.A179T 0.13 tolerated(0.57) benign(0.002) TCGA-A6-6781-01 5 19721472 19721472 G A CDH18 Silent p.S209S 0.22 TCGA-A6-6781-01 5 32098541 32098541 A G PDZD2 Silent p.S2673S 0.22 TCGA-A6-6781-01 5 32403302 32403302 C T ZFR Silent p.S475S 0.21 TCGA-A6-6781-01 5 32417783 32417783 G A ZFR Missense_Mutation p.P179S 0.27 tolerated(0.4) probably_damaging(0.968) TCGA-A6-6781-01 5 32712628 32712628 G A NPR3 Missense_Mutation p.R249H 0.33 tolerated(0.17) benign(0.002) TCGA-A6-6781-01 5 34845708 34845708 G A TTC23L Missense_Mutation p.C62Y 0.23 tolerated(1) benign(0.004) TCGA-A6-6781-01 5 35957367 35957367 C T UGT3A1 Missense_Mutation p.S333N 0.10 tolerated(0.31) benign(0.026) TCGA-A6-6781-01 5 3599391 3599391 C T IRX1 Missense_Mutation p.A110V 0.19 deleterious(0.03) probably_damaging(0.935) TCGA-A6-6781-01 5 37061004 37061004 C T NIPBL Nonsense_Mutation p.R2582* 0.20 TCGA-A6-6781-01 5 38528889 38528889 A G LIFR Missense_Mutation p.S66P 0.19 deleterious(0) possibly_damaging(0.632) TCGA-A6-6781-01 5 38932026 38932026 G A OSMR Missense_Mutation p.V752I 0.15 tolerated(0.41) benign(0.022) TCGA-A6-6781-01 5 40716518 40716518 G A TTC33 Missense_Mutation p.T173M 0.22 tolerated(0.08) possibly_damaging(0.487) TCGA-A6-6781-01 5 42800844 42800844 T - SEPP1 Frame_Shift_Del p.K375Sfs*? 0.24 TCGA-A6-6781-01 5 5262767 5262767 C T ADAMTS16 Intron 0.26 TCGA-A6-6781-01 5 53815534 53815534 C T SNX18 Silent p.D584D 0.27 TCGA-A6-6781-01 5 54965612 54965612 G A SLC38A9 Silent p.Y114Y 0.25 TCGA-A6-6781-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.21 TCGA-A6-6781-01 5 59189048 59189048 G T PDE4D Silent p.P134P 0.15 TCGA-A6-6781-01 5 60786726 60786726 G A ZSWIM6 Missense_Mutation p.G383R 0.21 tolerated(0.07) possibly_damaging(0.897) TCGA-A6-6781-01 5 63890623 63890624 - C RGS7BP Frame_Shift_Ins p.V186Rfs*3 0.15 TCGA-A6-6781-01 5 67591101 67591101 G A PIK3R1 Missense_Mutation p.S565N 0.14 deleterious(0.03) benign(0.39) TCGA-A6-6781-01 5 69337359 69337359 G A SERF1B Missense_Mutation p.G42D 0.13 tolerated(0.09) probably_damaging(0.931) TCGA-A6-6781-01 5 71479569 71479569 G T MAP1B Splice_Site p.X96_splice 0.29 TCGA-A6-6781-01 5 71495359 71495359 C T MAP1B Silent p.Y2059Y 0.20 TCGA-A6-6781-01 5 74091995 74091995 G A FAM169A Missense_Mutation p.R374C 0.25 tolerated(0.12) benign(0.01) TCGA-A6-6781-01 5 76264840 76264840 G A CRHBP 3'UTR 0.26 TCGA-A6-6781-01 5 76926348 76926348 C T OTP Missense_Mutation p.S240N 0.17 tolerated(0.16) benign(0.025) TCGA-A6-6781-01 5 80550908 80550908 C T CKMT2 Missense_Mutation p.R182W 0.20 deleterious(0.02) probably_damaging(1) TCGA-A6-6781-01 5 81572042 81572042 A G RPS23 Silent p.G106G 0.21 TCGA-A6-6781-01 5 83680264 83680264 C T EDIL3 5'UTR 0.33 TCGA-A6-6781-01 5 90073730 90073730 G A GPR98 Missense_Mutation p.R4179Q 0.21 possibly_damaging(0.602) TCGA-A6-6781-01 5 90670757 90670757 G A ARRDC3 Silent p.R284R 0.27 TCGA-A6-6781-01 5 94803570 94803570 G A TTC37 Silent p.D1540D 0.21 TCGA-A6-6781-01 5 98234030 98234031 TT - CHD1 Frame_Shift_Del p.K432Vfs*6 0.16 TCGA-A6-6781-01 6 100369000 100369000 G A MCHR2 Missense_Mutation p.P280L 0.23 deleterious(0.02) probably_damaging(1) TCGA-A6-6781-01 6 10529110 10529110 A G GCNT2 5'UTR 0.13 TCGA-A6-6781-01 6 106987372 106987372 G A AIM1 Missense_Mutation p.A1197T 0.18 deleterious(0.02) probably_damaging(1) TCGA-A6-6781-01 6 107390321 107390322 - G BEND3 Frame_Shift_Ins p.E692Rfs*21 0.20 TCGA-A6-6781-01 6 110146315 110146315 A T FIG4 Missense_Mutation p.Q857H 0.19 tolerated(0.16) benign(0.004) TCGA-A6-6781-01 6 110300313 110300313 G A GPR6 5'UTR 0.24 TCGA-A6-6781-01 6 110746117 110746117 T - SLC22A16 Frame_Shift_Del p.T565Rfs*21 0.19 TCGA-A6-6781-01 6 111696053 111696053 G A REV3L Missense_Mutation p.R1169C 0.22 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-A6-6781-01 6 111701353 111701353 T C REV3L Missense_Mutation p.E429G 0.25 tolerated(0.39) benign(0) TCGA-A6-6781-01 6 112466059 112466059 G A LAMA4 Silent p.N810N 0.13 TCGA-A6-6781-01 6 116574671 116574671 T C TSPYL4 Silent p.G167G 0.17 TCGA-A6-6781-01 6 117869402 117869402 G A DCBLD1 Intron 0.22 TCGA-A6-6781-01 6 117869581 117869581 G A DCBLD1 Intron 0.23 TCGA-A6-6781-01 6 121563353 121563353 T - TBC1D32 Frame_Shift_Del p.K717Nfs*29 0.09 TCGA-A6-6781-01 6 126278182 126278182 C T HINT3 Missense_Mutation p.A20V 0.22 deleterious(0.05) benign(0.001) TCGA-A6-6781-01 6 130164747 130164747 C T TMEM244 Missense_Mutation p.V41M 0.22 tolerated(0.07) possibly_damaging(0.584) TCGA-A6-6781-01 6 1314504 1314504 C - FOXQ1 3'UTR 0.18 TCGA-A6-6781-01 6 136560934 136560934 C T MTFR2 Missense_Mutation p.R180H 0.24 tolerated(0.11) benign(0.023) TCGA-A6-6781-01 6 136596828 136596828 A G BCLAF1 Missense_Mutation p.L565S 0.15 deleterious(0) possibly_damaging(0.765) TCGA-A6-6781-01 6 137245681 137245681 C - SLC35D3 Frame_Shift_Del p.R368Efs*18 0.22 TCGA-A6-6781-01 6 1390302 1390302 C T FOXF2 Silent p.A40A 0.21 TCGA-A6-6781-01 6 139241370 139241370 C T REPS1 Missense_Mutation p.A504T 0.20 tolerated(0.72) benign(0.003) TCGA-A6-6781-01 6 143091953 143091953 G A HIVEP2 Missense_Mutation p.T1308M 0.24 tolerated(0.08) benign(0.013) TCGA-A6-6781-01 6 144508165 144508165 C T STX11 Missense_Mutation p.A134V 0.13 tolerated(0.61) benign(0.067) TCGA-A6-6781-01 6 147109618 147109618 C T ADGB Missense_Mutation p.A1470V 0.14 tolerated(0.83) benign(0) TCGA-A6-6781-01 6 150289946 150289946 G A ULBP1 Missense_Mutation p.V97M 0.16 tolerated(0.09) possibly_damaging(0.796) TCGA-A6-6781-01 6 151766726 151766726 T - RMND1 Frame_Shift_Del p.K74Sfs*10 0.20 TCGA-A6-6781-01 6 152265323 152265323 G A ESR1 Missense_Mutation p.R259Q 0.10 deleterious(0) probably_damaging(0.986) TCGA-A6-6781-01 6 152473215 152473215 C T SYNE1 Missense_Mutation p.R8064H 0.36 possibly_damaging(0.908) TCGA-A6-6781-01 6 152680528 152680528 G A SYNE1 Silent p.G3455G 0.19 TCGA-A6-6781-01 6 152738099 152738099 C A SYNE1 Missense_Mutation p.G1825C 0.33 benign(0.376) TCGA-A6-6781-01 6 15513490 15513490 G A JARID2 Missense_Mutation p.R1096H 0.22 deleterious(0.02) benign(0.437) TCGA-A6-6781-01 6 158923533 158923533 G A TULP4 Silent p.L946L 0.19 TCGA-A6-6781-01 6 159057756 159057756 C T DYNLT1 3'UTR 0.28 TCGA-A6-6781-01 6 159687182 159687182 G A FNDC1 Missense_Mutation p.R1784Q 0.27 deleterious(0.03) probably_damaging(0.937) TCGA-A6-6781-01 6 160169553 160169553 G T WTAP Intron 0.11 TCGA-A6-6781-01 6 160199685 160199685 C T ACAT2 Intron 0.18 TCGA-A6-6781-01 6 160227064 160227064 T A PNLDC1 Missense_Mutation p.W160R 0.14 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 6 160240045 160240045 C T PNLDC1 Missense_Mutation p.P431L 0.27 tolerated(0.09) benign(0.093) TCGA-A6-6781-01 6 160482960 160482960 G A IGF2R Silent p.S1194S 0.15 TCGA-A6-6781-01 6 160819033 160819033 C T SLC22A3 Missense_Mutation p.A151V 0.24 deleterious(0) possibly_damaging(0.815) TCGA-A6-6781-01 6 160874534 160874534 G A SLC22A3 3'Flank 0.24 TCGA-A6-6781-01 6 161020539 161020539 G A LPA Missense_Mutation p.P1094S 0.30 deleterious(0) probably_damaging(0.988) TCGA-A6-6781-01 6 161137791 161137791 C A PLG Silent p.R261R 0.23 TCGA-A6-6781-01 6 161152843 161152843 G A PLG Missense_Mutation p.C502Y 0.24 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 6 161512534 161512534 C T MAP3K4 Nonsense_Mutation p.R1033* 0.22 TCGA-A6-6781-01 6 16328059 16328059 C T ATXN1 Silent p.S161S 0.32 TCGA-A6-6781-01 6 166571895 166571895 C T T Missense_Mutation p.A406T 0.13 tolerated(0.88) benign(0.002) TCGA-A6-6781-01 6 166572004 166572004 G A T Silent p.N369N 0.26 TCGA-A6-6781-01 6 166572040 166572040 G T T Silent p.A357A 0.24 TCGA-A6-6781-01 6 168377236 168377237 - G RP3-470B24.5 RNA 0.11 TCGA-A6-6781-01 6 169982990 169982990 C T WDR27 Missense_Mutation p.R822Q 0.15 deleterious(0.01) possibly_damaging(0.803) TCGA-A6-6781-01 6 170593026 170593026 G A DLL1 Silent p.C447C 0.12 TCGA-A6-6781-01 6 17606160 17606160 T A FAM8A1 Missense_Mutation p.L338H 0.05 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 6 17837161 17837161 C A KIF13A Missense_Mutation p.R368L 0.18 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 6 18122226 18122226 A - NHLRC1 Frame_Shift_Del p.F204Lfs*28 0.20 TCGA-A6-6781-01 6 20481473 20481473 C T E2F3 Missense_Mutation p.T181M 0.23 deleterious(0) probably_damaging(0.995) TCGA-A6-6781-01 6 21597791 21597791 C T SOX4 3'UTR 0.19 TCGA-A6-6781-01 6 25619706 25619706 G T LRRC16A Missense_Mutation p.Q1337H 0.25 tolerated_low_confidence(0.29) benign(0.001) TCGA-A6-6781-01 6 26031943 26031943 T C HIST1H3B Missense_Mutation p.K116E 0.18 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-A6-6781-01 6 26091149 26091149 G A HFE Missense_Mutation p.V53M 0.19 tolerated(0.06) possibly_damaging(0.64) TCGA-A6-6781-01 6 26426513 26426513 C T BTN2A3P RNA 0.26 TCGA-A6-6781-01 6 27805772 27805772 G A HIST1H2AK Silent p.L116L 0.24 TCGA-A6-6781-01 6 27834955 27834956 - C HIST1H1B Frame_Shift_Ins p.E118Gfs*13 0.12 TCGA-A6-6781-01 6 27879394 27879394 C T OR2B2 Missense_Mutation p.R235Q 0.25 tolerated(0.39) benign(0.011) TCGA-A6-6781-01 6 28227548 28227548 G A NKAPL Silent p.A133A 0.13 TCGA-A6-6781-01 6 28333361 28333361 A - ZKSCAN3 Frame_Shift_Del p.N307Mfs*23 0.17 TCGA-A6-6781-01 6 28540330 28540330 A - SCAND3 Frame_Shift_Del p.F1112Lfs*29 0.18 TCGA-A6-6781-01 6 29408341 29408341 C T OR10C1 Silent p.V183V 0.33 TCGA-A6-6781-01 6 29639244 29639245 CT - MOG 3'UTR 0.15 TCGA-A6-6781-01 6 29910346 29910346 C - HLA-A Frame_Shift_Del p.R7Efs*13 0.22 TCGA-A6-6781-01 6 30136204 30136204 G T TRIM15 Missense_Mutation p.R202M 0.21 deleterious(0) possibly_damaging(0.863) TCGA-A6-6781-01 6 30619242 30619242 C T C6orf136 Missense_Mutation p.R436W 0.20 deleterious(0) probably_damaging(0.967) TCGA-A6-6781-01 6 30622956 30622956 C T DHX16 Missense_Mutation p.R940H 0.19 deleterious(0) unknown(0) TCGA-A6-6781-01 6 30653707 30653707 C T PPP1R18 Missense_Mutation p.R30Q 0.28 tolerated(0.31) benign(0.041) TCGA-A6-6781-01 6 30916653 30916653 C T DPCR1 Missense_Mutation p.R138C 0.26 deleterious(0.04) probably_damaging(0.967) TCGA-A6-6781-01 6 31110870 31110870 C T CCHCR1 Silent p.Q787Q 0.21 TCGA-A6-6781-01 6 31498939 31498939 C T DDX39B Missense_Mutation p.R338Q 0.26 tolerated(0.09) benign(0.003) TCGA-A6-6781-01 6 31689498 31689498 G T LY6G6C 5'UTR 0.11 TCGA-A6-6781-01 6 31838675 31838675 C T SLC44A4 Missense_Mutation p.R284Q 0.21 tolerated(0.51) benign(0.017) TCGA-A6-6781-01 6 31856779 31856779 G A EHMT2 Missense_Mutation p.P395S 0.13 tolerated(0.4) benign(0.028) TCGA-A6-6781-01 6 31911467 31911467 G A CFB Silent p.A385A 0.12 TCGA-A6-6781-01 6 31927854 31927854 C - SKIV2L Frame_Shift_Del p.P66Qfs*99 0.12 TCGA-A6-6781-01 6 31928061 31928061 G A SKIV2L Missense_Mutation p.D101N 0.20 tolerated(0.96) benign(0.013) TCGA-A6-6781-01 6 32008981 32008981 C - CYP21A2 3'UTR 0.27 TCGA-A6-6781-01 6 32046936 32046936 G A RNA5SP206 5'Flank 0.27 TCGA-A6-6781-01 6 32729660 32729660 G A HLA-DQB2 Silent p.N47N 0.12 TCGA-A6-6781-01 6 33543176 33543176 G A BAK1 Silent p.D83D 0.18 TCGA-A6-6781-01 6 34935091 34935091 C T ANKS1A Silent p.G91G 0.18 TCGA-A6-6781-01 6 34950530 34950530 C T ANKS1A Missense_Mutation p.T245M 0.22 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 6 35089915 35089915 G A TCP11 Missense_Mutation p.T199M 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-A6-6781-01 6 35108559 35108560 - G TCP11 Frame_Shift_Ins p.Q43Pfs*24 0.26 TCGA-A6-6781-01 6 35604903 35604903 C T FKBP5 Silent p.T46T 0.27 TCGA-A6-6781-01 6 35918972 35918972 C T SLC26A8 Missense_Mutation p.V814M 0.17 deleterious(0.04) probably_damaging(0.924) TCGA-A6-6781-01 6 35922940 35922940 C T SLC26A8 Missense_Mutation p.V741I 0.17 tolerated(0.49) benign(0.079) TCGA-A6-6781-01 6 35923220 35923220 A - SLC26A8 Frame_Shift_Del p.F647Lfs*4 0.21 TCGA-A6-6781-01 6 36104511 36104511 G A MAPK13 Missense_Mutation p.E192K 0.20 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 6 37430662 37430662 C T CMTR1 Silent p.F461F 0.25 TCGA-A6-6781-01 6 38840517 38840517 T - DNAH8 Frame_Shift_Del p.S2184Lfs*8 0.28 TCGA-A6-6781-01 6 38854586 38854586 G A DNAH8 Missense_Mutation p.R2543Q 0.16 probably_damaging(1) TCGA-A6-6781-01 6 39880102 39880102 C T MOCS1 Missense_Mutation p.G296D 0.19 tolerated(0.05) benign(0.299) TCGA-A6-6781-01 6 40400230 40400230 C T LRFN2 Missense_Mutation p.R208Q 0.21 tolerated(0.05) probably_damaging(0.989) TCGA-A6-6781-01 6 41566581 41566581 C T FOXP4 Silent p.P650P 0.22 TCGA-A6-6781-01 6 42584934 42584934 T C UBR2 Intron 0.23 TCGA-A6-6781-01 6 42629983 42629983 T C UBR2 Silent p.C1168C 0.23 TCGA-A6-6781-01 6 42852361 42852361 G A RPL7L1 Missense_Mutation p.V99M 0.20 tolerated(0.09) possibly_damaging(0.584) TCGA-A6-6781-01 6 42893443 42893443 C T PTCRA 3'UTR 0.26 TCGA-A6-6781-01 6 42980743 42980743 G A MEA1 Silent p.D109D 0.10 TCGA-A6-6781-01 6 43251997 43251997 C T TTBK1 Silent p.P1173P 0.21 TCGA-A6-6781-01 6 43323550 43323550 A - ZNF318 Frame_Shift_Del p.S508Pfs*4 0.17 TCGA-A6-6781-01 6 43582271 43582271 T - POLH Frame_Shift_Del p.F708Lfs*4 0.21 TCGA-A6-6781-01 6 43970824 43970824 C T C6orf223 Silent p.S230S 0.25 TCGA-A6-6781-01 6 44344170 44344170 G A SPATS1 Nonsense_Mutation p.W278* 0.20 TCGA-A6-6781-01 6 46135994 46135994 A G ENPP5 Silent p.T2T 0.24 TCGA-A6-6781-01 6 46787399 46787399 C T MEP1A Missense_Mutation p.R172W 0.17 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 6 49518645 49518645 G A C6orf141 Missense_Mutation p.R47Q 0.11 tolerated(0.35) benign(0.013) TCGA-A6-6781-01 6 4952630 4952630 C T CDYL Missense_Mutation p.S488L 0.26 tolerated(0.12) benign(0.005) TCGA-A6-6781-01 6 52878569 52878569 G A ICK Missense_Mutation p.T348M 0.17 tolerated(0.15) benign(0.001) TCGA-A6-6781-01 6 54791326 54791326 G A FAM83B Missense_Mutation p.R201H 0.20 deleterious(0) possibly_damaging(0.486) TCGA-A6-6781-01 6 56480815 56480815 C T DST Intron 0.24 TCGA-A6-6781-01 6 56481863 56481863 C T DST Intron 0.23 TCGA-A6-6781-01 6 64408416 64408417 - T PHF3 Frame_Shift_Ins p.R971Sfs*6 0.24 TCGA-A6-6781-01 6 72806712 72806712 G A RIMS1 Silent p.A102A 0.15 TCGA-A6-6781-01 6 74072586 74072586 T A KHDC3L Missense_Mutation p.V45D 0.22 deleterious(0) probably_damaging(0.982) TCGA-A6-6781-01 6 74468745 74468745 C T CD109 Missense_Mutation p.T251M 0.22 deleterious(0.03) benign(0.347) TCGA-A6-6781-01 6 7542250 7542251 - G DSP Frame_Shift_Ins p.T37Hfs*56 0.15 TCGA-A6-6781-01 6 7585197 7585197 G A DSP Missense_Mutation p.G2568S 0.25 benign(0.002) TCGA-A6-6781-01 6 84922730 84922730 G A KIAA1009 Silent p.N172N 0.20 TCGA-A6-6781-01 6 87965720 87965720 G A ZNF292 Silent p.S791S 0.25 TCGA-A6-6781-01 6 90331600 90331600 C T ANKRD6 Intron 0.25 TCGA-A6-6781-01 6 96660363 96660364 - A FUT9 3'UTR 0.16 TCGA-A6-6781-01 7 100087052 100087052 G - NYAP1 Frame_Shift_Del p.V572Cfs*2 0.33 TCGA-A6-6781-01 7 100454762 100454762 G A SLC12A9 Missense_Mutation p.G241S 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-A6-6781-01 7 100679375 100679375 G A MUC17 Missense_Mutation p.G1560S 0.24 unknown(0) TCGA-A6-6781-01 7 100682300 100682300 C T MUC17 Missense_Mutation p.L2535F 0.26 probably_damaging(0.979) TCGA-A6-6781-01 7 100732223 100732223 G A TRIM56 Missense_Mutation p.V544M 0.20 deleterious(0) benign(0.117) TCGA-A6-6781-01 7 102016658 102016658 G T PRKRIP1 Splice_Site 0.15 TCGA-A6-6781-01 7 102097991 102097991 C T ALKBH4 Silent p.K253K 0.29 TCGA-A6-6781-01 7 102760123 102760123 A - NAPEPLD Frame_Shift_Del p.F281Sfs*14 0.28 TCGA-A6-6781-01 7 104767453 104767453 A T SRPK2 Nonsense_Mutation p.Y603* 0.35 TCGA-A6-6781-01 7 107342497 107342497 C T SLC26A4 Missense_Mutation p.R677W 0.18 deleterious(0) possibly_damaging(0.893) TCGA-A6-6781-01 7 107432368 107432368 G A SLC26A3 Silent p.L97L 0.18 TCGA-A6-6781-01 7 108213648 108213648 A - DNAJB9 Frame_Shift_Del p.M176Cfs*67 0.17 TCGA-A6-6781-01 7 1097768 1097768 C T GPR146 Missense_Mutation p.A206V 0.43 deleterious(0) probably_damaging(0.983) TCGA-A6-6781-01 7 111127377 111127377 C - IMMP2L Frame_Shift_Del p.S53Afs*9 0.14 TCGA-A6-6781-01 7 111927045 111927045 C T ZNF277 Missense_Mutation p.A70V 0.21 tolerated(0.1) benign(0.005) TCGA-A6-6781-01 7 11418728 11418729 - C THSD7A Frame_Shift_Ins p.R1591Kfs*62 0.20 TCGA-A6-6781-01 7 11447034 11447036 TTC - THSD7A In_Frame_Del p.K1271del 0.10 TCGA-A6-6781-01 7 11676105 11676105 G - THSD7A Frame_Shift_Del p.P225Rfs*11 0.17 TCGA-A6-6781-01 7 117375138 117375138 T C CTTNBP2 Silent p.E1235E 0.18 TCGA-A6-6781-01 7 123185692 123185692 G A NDUFA5 Silent p.G74G 0.08 TCGA-A6-6781-01 7 123332485 123332485 T - WASL Frame_Shift_Del p.V422Wfs*17 0.24 TCGA-A6-6781-01 7 127238492 127238492 C T FSCN3 Missense_Mutation p.R322C 0.23 tolerated(0.09) benign(0) TCGA-A6-6781-01 7 127668603 127668603 T - LRRC4 3'UTR 0.26 TCGA-A6-6781-01 7 128415106 128415106 G A OPN1SW Missense_Mutation p.T152M 0.28 tolerated(1) benign(0.003) TCGA-A6-6781-01 7 128455759 128455759 A - CCDC136 Frame_Shift_Del p.K1048Sfs*3 0.19 TCGA-A6-6781-01 7 128478704 128478704 C T FLNC Missense_Mutation p.R420W 0.22 deleterious(0) probably_damaging(0.927) TCGA-A6-6781-01 7 128517233 128517233 C T KCP RNA 0.22 TCGA-A6-6781-01 7 128619098 128619098 C T TNPO3 Missense_Mutation p.R667H 0.15 deleterious(0) probably_damaging(0.987) TCGA-A6-6781-01 7 130001056 130001056 T C CPA5 Missense_Mutation p.F169L 0.18 deleterious(0.03) benign(0.356) TCGA-A6-6781-01 7 130140342 130140342 C T MEST Nonsense_Mutation p.R206* 0.27 TCGA-A6-6781-01 7 134851578 134851578 C - C7orf49 Frame_Shift_Del p.A87Lfs*62 0.16 TCGA-A6-6781-01 7 134931240 134931240 C T STRA8 Missense_Mutation p.A173V 0.22 tolerated(0.37) benign(0.013) TCGA-A6-6781-01 7 134943185 134943185 G A STRA8 Missense_Mutation p.V312I 0.18 tolerated(0.55) benign(0.006) TCGA-A6-6781-01 7 139655370 139655370 G A TBXAS1 Missense_Mutation p.E265K 0.23 tolerated(0.9) benign(0.025) TCGA-A6-6781-01 7 141537730 141537730 G A PRSS37 Silent p.L120L 0.20 TCGA-A6-6781-01 7 142622670 142622670 C T TRPV5 Missense_Mutation p.R359H 0.23 tolerated(0.4) benign(0.006) TCGA-A6-6781-01 7 143956631 143956631 A G OR2A7 Missense_Mutation p.S31P 0.12 tolerated(0.11) possibly_damaging(0.775) TCGA-A6-6781-01 7 1484389 1484389 C T MICALL2 Silent p.P439P 0.26 TCGA-A6-6781-01 7 149417175 149417175 C T KRBA1 Silent p.H37H 0.23 TCGA-A6-6781-01 7 149524937 149524937 G A SSPO RNA 0.21 TCGA-A6-6781-01 7 150069439 150069439 C - REPIN1 Frame_Shift_Del p.S430Pfs*? 0.19 TCGA-A6-6781-01 7 150171545 150171545 G A GIMAP8 Silent p.T376T 0.21 TCGA-A6-6781-01 7 150707211 150707211 C - NOS3 Frame_Shift_Del p.G843Afs*115 0.22 TCGA-A6-6781-01 7 150737669 150737669 G A ABCB8 Missense_Mutation p.V446I 0.26 tolerated(1) benign(0) TCGA-A6-6781-01 7 150763982 150763982 C T SLC4A2 Missense_Mutation p.R290W 0.17 deleterious(0) probably_damaging(0.987) TCGA-A6-6781-01 7 150767828 150767828 C T SLC4A2 Missense_Mutation p.L527F 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 7 150775722 150775722 C T FASTK Missense_Mutation p.R251Q 0.22 tolerated(0.09) benign(0.038) TCGA-A6-6781-01 7 150835244 150835244 G A AGAP3 Missense_Mutation p.A504T 0.23 tolerated(0.62) benign(0.005) TCGA-A6-6781-01 7 150835305 150835305 G A AGAP3 Missense_Mutation p.R524H 0.26 tolerated(0.07) benign(0.009) TCGA-A6-6781-01 7 151073788 151073788 G A NUB1 Silent p.Q544Q 0.13 TCGA-A6-6781-01 7 151292527 151292527 T C PRKAG2 Silent p.S256S 0.25 TCGA-A6-6781-01 7 151878529 151878529 C T KMT2C Missense_Mutation p.R2139Q 0.24 possibly_damaging(0.722) TCGA-A6-6781-01 7 152551713 152551713 G A ACTR3B 3'UTR 0.19 TCGA-A6-6781-01 7 153584641 153584641 T - DPP6 5'UTR 0.38 TCGA-A6-6781-01 7 155599440 155599440 G A SHH Intron 0.28 TCGA-A6-6781-01 7 155599487 155599487 G - SHH Intron 0.17 TCGA-A6-6781-01 7 156798359 156798359 C T MNX1 Missense_Mutation p.S354N 0.23 deleterious(0.01) possibly_damaging(0.827) TCGA-A6-6781-01 7 156802992 156802992 G - MNX1 Frame_Shift_Del p.P18Hfs*204 0.18 TCGA-A6-6781-01 7 157177651 157177651 C T DNAJB6 Missense_Mutation p.S190L 0.21 deleterious(0.02) unknown(0) TCGA-A6-6781-01 7 157926727 157926727 C T PTPRN2 Missense_Mutation p.G400R 0.23 deleterious(0.02) possibly_damaging(0.88) TCGA-A6-6781-01 7 1608925 1608925 G A PSMG3 Silent p.C17C 0.24 TCGA-A6-6781-01 7 16644450 16644450 C T ANKMY2 Missense_Mutation p.V303I 0.18 tolerated(0.27) benign(0.053) TCGA-A6-6781-01 7 16745858 16745858 G T BZW2 3'UTR 0.19 TCGA-A6-6781-01 7 18832980 18832980 A G HDAC9 Missense_Mutation p.T743A 0.12 deleterious(0) benign(0.254) TCGA-A6-6781-01 7 20825055 20825055 G T SP8 Silent p.A127A 0.25 TCGA-A6-6781-01 7 21609805 21609806 - A DNAH11 Frame_Shift_Ins p.L441Ifs*25 0.23 TCGA-A6-6781-01 7 21640729 21640729 C T DNAH11 Silent p.S1119S 0.26 TCGA-A6-6781-01 7 2472368 2472368 G A CHST12 Missense_Mutation p.A32T 0.22 tolerated(0.62) benign(0.015) TCGA-A6-6781-01 7 27934970 27934970 G A JAZF1 Missense_Mutation p.S85L 0.22 deleterious(0.01) benign(0.023) TCGA-A6-6781-01 7 2962889 2962889 G A CARD11 Silent p.G673G 0.25 TCGA-A6-6781-01 7 36324326 36324326 C T EEPD1 Missense_Mutation p.A358V 0.24 tolerated(0.2) benign(0.003) TCGA-A6-6781-01 7 36895310 36895310 A G ELMO1 Missense_Mutation p.M677T 0.31 deleterious(0) possibly_damaging(0.565) TCGA-A6-6781-01 7 38247155 38247155 G A STARD3NL Missense_Mutation p.S17N 0.23 tolerated(0.51) benign(0.017) TCGA-A6-6781-01 7 39243881 39243881 C T POU6F2 Missense_Mutation p.H80Y 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.794) TCGA-A6-6781-01 7 40041476 40041476 A - CDK13 Frame_Shift_Del p.V736Yfs*32 0.17 TCGA-A6-6781-01 7 40102647 40102647 A - CDK13 Frame_Shift_Del p.K911Nfs*13 0.13 TCGA-A6-6781-01 7 4185372 4185372 G A SDK1 Missense_Mutation p.R1416H 0.23 tolerated(0.16) benign(0.08) TCGA-A6-6781-01 7 4285377 4285377 C T SDK1 Silent p.G2107G 0.23 TCGA-A6-6781-01 7 44185315 44185315 C T GCK Missense_Mutation p.R346H 0.17 deleterious(0.05) possibly_damaging(0.564) TCGA-A6-6781-01 7 44272430 44272430 G A CAMK2B Silent p.D389D 0.15 TCGA-A6-6781-01 7 45003754 45003754 C T MYO1G Missense_Mutation p.R880H 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-A6-6781-01 7 45009369 45009369 C T MYO1G Missense_Mutation p.D480N 0.09 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 7 45124663 45124663 C A NACAD Missense_Mutation p.E372D 0.23 deleterious(0) probably_damaging(0.981) TCGA-A6-6781-01 7 47479121 47479121 C T TNS3 Silent p.T38T 0.34 TCGA-A6-6781-01 7 4799094 4799094 G A FOXK1 Missense_Mutation p.V522I 0.18 tolerated(0.14) possibly_damaging(0.459) TCGA-A6-6781-01 7 48081096 48081096 C T C7orf57 Missense_Mutation p.A74V 0.15 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 7 48147844 48147844 C T UPP1 Missense_Mutation p.R275C 0.22 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 7 48312105 48312105 A G ABCA13 Missense_Mutation p.I948V 0.22 benign(0.002) TCGA-A6-6781-01 7 51095511 51095511 T - COBL Frame_Shift_Del p.K1094Nfs*20 0.19 TCGA-A6-6781-01 7 5372282 5372282 G A TNRC18 Missense_Mutation p.R2040C 0.22 possibly_damaging(0.689) TCGA-A6-6781-01 7 56132067 56132067 G A SUMF2 Silent p.K40K 0.21 TCGA-A6-6781-01 7 56142430 56142430 G A SUMF2 Splice_Site p.X198_splice 0.19 TCGA-A6-6781-01 7 56146188 56146188 C T SUMF2 Intron 0.24 TCGA-A6-6781-01 7 57188434 57188434 T G ZNF479 Missense_Mutation p.T230P 0.20 deleterious(0.04) possibly_damaging(0.864) TCGA-A6-6781-01 7 6193770 6193770 G A USP42 Missense_Mutation p.R862Q 0.16 tolerated(0.56) benign(0.033) TCGA-A6-6781-01 7 63538230 63538230 G A ZNF727 Missense_Mutation p.C268Y 0.17 tolerated(0.62) benign(0.01) TCGA-A6-6781-01 7 6439775 6439775 T - RAC1 Frame_Shift_Del p.S102Pfs*3 0.17 TCGA-A6-6781-01 7 6487396 6487396 C A DAGLB Silent p.L26L 0.22 TCGA-A6-6781-01 7 6660881 6660881 C T ZNF853 Nonsense_Mutation p.R87* 0.19 TCGA-A6-6781-01 7 6661237 6661237 G A ZNF853 Silent p.Q205Q 0.22 TCGA-A6-6781-01 7 69064802 69064802 G A AUTS2 Missense_Mutation p.D55N 0.17 deleterious_low_confidence(0.01) benign(0.275) TCGA-A6-6781-01 7 7278468 7278468 C A C1GALT1 Missense_Mutation p.P268H 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 7 72849772 72849772 C T FZD9 Missense_Mutation p.R479W 0.33 tolerated(0.19) probably_damaging(0.938) TCGA-A6-6781-01 7 72987763 72987763 C T TBL2 Missense_Mutation p.R162H 0.20 tolerated(0.06) possibly_damaging(0.773) TCGA-A6-6781-01 7 73249221 73249221 A G WBSCR27 Missense_Mutation p.V197A 0.26 tolerated(0.45) benign(0.005) TCGA-A6-6781-01 7 74542146 74542146 C T GTF2IRD2B Silent p.C210C 0.18 TCGA-A6-6781-01 7 75051288 75051288 C T POM121C Silent p.A749A 0.16 TCGA-A6-6781-01 7 77229987 77229987 C T PTPN12 Missense_Mutation p.R187C 0.26 deleterious(0) probably_damaging(0.995) TCGA-A6-6781-01 7 82764964 82764964 C T PCLO Silent p.E634E 0.16 TCGA-A6-6781-01 7 83739848 83739848 C T SEMA3A Missense_Mutation p.A131T 0.21 tolerated(0.16) benign(0.362) TCGA-A6-6781-01 7 86811387 86811387 A C DMTF1 Intron 0.24 TCGA-A6-6781-01 7 87339912 87339912 C T RUNDC3B Silent p.L150L 0.22 TCGA-A6-6781-01 7 87782587 87782587 C T ADAM22 Missense_Mutation p.T578M 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 7 90043126 90043126 C T CLDN12 3'UTR 0.26 TCGA-A6-6781-01 7 90339190 90339190 C T CDK14 Intron 0.18 TCGA-A6-6781-01 7 90895300 90895300 T C FZD1 Missense_Mutation p.Y369H 0.25 tolerated(0.07) benign(0.211) TCGA-A6-6781-01 7 92165879 92165879 C T RBM48 Intron 0.33 TCGA-A6-6781-01 7 92732344 92732344 C A SAMD9 Nonsense_Mutation p.G1023* 0.21 TCGA-A6-6781-01 7 92826814 92826814 T - HEPACAM2 Frame_Shift_Del p.K374Nfs*8 0.18 TCGA-A6-6781-01 7 92844875 92844875 T - HEPACAM2 Frame_Shift_Del p.N185Mfs*25 0.20 TCGA-A6-6781-01 7 93551459 93551459 C A GNG11 Missense_Mutation p.L4I 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-A6-6781-01 7 94059741 94059742 - A COL1A2 3'UTR 0.21 TCGA-A6-6781-01 7 94539688 94539688 G - PPP1R9A Frame_Shift_Del p.G91Vfs*10 0.17 TCGA-A6-6781-01 7 98528343 98528343 G A TRRAP Missense_Mutation p.V1161M 0.19 possibly_damaging(0.76) TCGA-A6-6781-01 7 98540582 98540582 G A TRRAP Missense_Mutation p.R1472H 0.24 possibly_damaging(0.835) TCGA-A6-6781-01 7 98581955 98581955 G A TRRAP Missense_Mutation p.V3092I 0.20 benign(0.273) TCGA-A6-6781-01 7 98782649 98782649 G A KPNA7 Missense_Mutation p.A346V 0.27 tolerated(0.18) possibly_damaging(0.676) TCGA-A6-6781-01 7 99517068 99517068 G T TRIM4 5'UTR 0.30 TCGA-A6-6781-01 7 99691963 99691963 G A MCM7 Missense_Mutation p.R561C 0.24 deleterious(0.02) probably_damaging(0.988) TCGA-A6-6781-01 7 99818615 99818615 G A PVRIG Missense_Mutation p.R241H 0.24 tolerated(0.54) benign(0.272) TCGA-A6-6781-01 7 99956479 99956479 C T PILRB Silent p.H77H 0.27 TCGA-A6-6781-01 8 101718995 101718995 C T PABPC1 Missense_Mutation p.A496T 0.14 tolerated(0.43) benign(0.004) TCGA-A6-6781-01 8 103289349 103289350 TT - UBR5 Frame_Shift_Del p.K2120Rfs*13 0.20 TCGA-A6-6781-01 8 107670320 107670320 T C OXR1 Intron 0.25 TCGA-A6-6781-01 8 110342140 110342140 G A NUDCD1 Intron 0.25 TCGA-A6-6781-01 8 110477371 110477371 G A PKHD1L1 Nonsense_Mutation p.W2770* 0.22 TCGA-A6-6781-01 8 110592133 110592133 C A SYBU Missense_Mutation p.R210M 0.24 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 8 113299371 113299371 C A CSMD3 Missense_Mutation p.G3085C 0.24 deleterious(0) probably_damaging(0.995) TCGA-A6-6781-01 8 11607704 11607704 C T GATA4 Missense_Mutation p.P290S 0.26 tolerated(0.07) possibly_damaging(0.739) TCGA-A6-6781-01 8 116426160 116426160 T - TRPS1 3'UTR 0.19 TCGA-A6-6781-01 8 117658786 117658786 C T EIF3H Silent p.P295P 0.22 TCGA-A6-6781-01 8 124351667 124351667 C T ATAD2 Missense_Mutation p.R913H 0.08 tolerated(0.17) benign(0) TCGA-A6-6781-01 8 124988250 124988250 G A FER1L6 Missense_Mutation p.V266I 0.26 deleterious(0.03) benign(0.333) TCGA-A6-6781-01 8 125109530 125109530 G A FER1L6 Missense_Mutation p.V1572M 0.28 deleterious(0) possibly_damaging(0.722) TCGA-A6-6781-01 8 125499566 125499566 G - RNF139 Frame_Shift_Del p.R559Lfs*60 0.14 TCGA-A6-6781-01 8 125555400 125555400 G A NDUFB9 Silent p.A58A 0.27 TCGA-A6-6781-01 8 125989893 125989893 C A ZNF572 Silent p.T461T 0.28 TCGA-A6-6781-01 8 126448633 126448633 A G TRIB1 Missense_Mutation p.I347V 0.15 tolerated(0.54) benign(0) TCGA-A6-6781-01 8 128750771 128750771 G A MYC Missense_Mutation p.G103D 0.21 tolerated(0.11) benign(0.334) TCGA-A6-6781-01 8 12957432 12957432 G A DLC1 Missense_Mutation p.T805M 0.39 tolerated(0.18) benign(0.042) TCGA-A6-6781-01 8 12957694 12957694 C T DLC1 Missense_Mutation p.A718T 0.19 tolerated(0.36) benign(0.014) TCGA-A6-6781-01 8 12958062 12958062 C T DLC1 Missense_Mutation p.R595H 0.26 tolerated(1) benign(0.003) TCGA-A6-6781-01 8 12958130 12958130 C T DLC1 Silent p.P572P 0.12 TCGA-A6-6781-01 8 130789734 130789734 G A GSDMC Missense_Mutation p.R34C 0.15 tolerated(0.14) benign(0.212) TCGA-A6-6781-01 8 139164553 139164553 G A FAM135B Missense_Mutation p.A722V 0.18 tolerated(0.11) benign(0.017) TCGA-A6-6781-01 8 139263216 139263216 G A FAM135B Missense_Mutation p.T137M 0.28 deleterious(0) benign(0.076) TCGA-A6-6781-01 8 143556838 143556838 G A BAI1 Missense_Mutation p.G263D 0.26 deleterious(0.03) probably_damaging(0.931) TCGA-A6-6781-01 8 143559629 143559629 G A BAI1 Missense_Mutation p.R490H 0.16 deleterious(0) possibly_damaging(0.812) TCGA-A6-6781-01 8 143762852 143762852 C T PSCA Missense_Mutation p.R45C 0.19 deleterious(0) probably_damaging(0.959) TCGA-A6-6781-01 8 144812308 144812308 G A FAM83H Nonsense_Mutation p.Q149* 0.36 TCGA-A6-6781-01 8 144942392 144942392 C T EPPK1 Missense_Mutation p.G1677D 0.23 probably_damaging(0.999) TCGA-A6-6781-01 8 144945339 144945340 - T EPPK1 Frame_Shift_Ins p.Y695Ifs*68 0.21 TCGA-A6-6781-01 8 145019402 145019402 G A PLEC Intron 0.29 TCGA-A6-6781-01 8 145095931 145095931 C T SPATC1 Missense_Mutation p.P410L 0.24 tolerated(0.05) benign(0.173) TCGA-A6-6781-01 8 145111577 145111577 G T OPLAH Missense_Mutation p.H596Q 0.15 tolerated(0.61) benign(0.001) TCGA-A6-6781-01 8 145113684 145113684 G A OPLAH Silent p.H193H 0.17 TCGA-A6-6781-01 8 145140893 145140893 C T GPAA1 Silent p.G577G 0.26 TCGA-A6-6781-01 8 145541778 145541778 G A DGAT1 Missense_Mutation p.P244L 0.19 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 8 145731984 145731984 C T GPT Missense_Mutation p.A411V 0.14 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 8 1496940 1496940 C T DLGAP2 Silent p.C27C 0.25 TCGA-A6-6781-01 8 1497007 1497007 G - DLGAP2 Frame_Shift_Del p.R52Afs*15 0.22 TCGA-A6-6781-01 8 15397999 15397999 G A TUSC3 Silent p.L20L 0.27 TCGA-A6-6781-01 8 1954814 1954814 C T KBTBD11 3'UTR 0.19 TCGA-A6-6781-01 8 20005196 20005196 G A SLC18A1 Silent p.H416H 0.26 TCGA-A6-6781-01 8 21768226 21768226 G A DOK2 Silent p.Y192Y 0.21 TCGA-A6-6781-01 8 21953936 21953936 G A FAM160B2 Silent p.A71A 0.20 TCGA-A6-6781-01 8 22066958 22066958 A T BMP1 Missense_Mutation p.E859V 0.17 tolerated(0.53) benign(0.003) TCGA-A6-6781-01 8 22107968 22107968 C T POLR3D Silent p.H378H 0.28 TCGA-A6-6781-01 8 22451280 22451280 C T PDLIM2 Missense_Mutation p.R556C 0.21 deleterious(0.01) possibly_damaging(0.86) TCGA-A6-6781-01 8 23560516 23560516 G A NKX2-6 Silent p.S118S 0.12 TCGA-A6-6781-01 8 24255245 24255245 T C ADAMDEC1 Missense_Mutation p.L226P 0.19 deleterious(0) probably_damaging(0.981) TCGA-A6-6781-01 8 24771943 24771943 G A NEFM Missense_Mutation p.A213T 0.22 tolerated(0.08) unknown(0) TCGA-A6-6781-01 8 25296833 25296833 T C KCTD9 Missense_Mutation p.H154R 0.22 deleterious(0.04) benign(0.259) TCGA-A6-6781-01 8 26238544 26238544 G A BNIP3L 5'Flank 0.29 TCGA-A6-6781-01 8 26248884 26248884 T C BNIP3L Silent p.L76L 0.29 TCGA-A6-6781-01 8 27288442 27288442 C T PTK2B Missense_Mutation p.S240L 0.31 tolerated(0.86) benign(0.004) TCGA-A6-6781-01 8 27320982 27320982 C T CHRNA2 Silent p.P326P 0.24 TCGA-A6-6781-01 8 27364393 27364393 T - EPHX2 Frame_Shift_Del p.L183Wfs*8 0.21 TCGA-A6-6781-01 8 27645492 27645493 - A ESCO2 Frame_Shift_Ins p.T371Nfs*32 0.21 TCGA-A6-6781-01 8 2836197 2836197 C A CSMD1 Nonsense_Mutation p.G2835* 0.24 TCGA-A6-6781-01 8 30402062 30402062 C T RBPMS Missense_Mutation p.P150L 0.31 tolerated(0.07) possibly_damaging(0.607) TCGA-A6-6781-01 8 3205574 3205574 G A CSMD1 Silent p.A1138A 0.20 TCGA-A6-6781-01 8 32621397 32621397 C T NRG1 Missense_Mutation p.A472V 0.17 tolerated(0.23) benign(0.016) TCGA-A6-6781-01 8 37556022 37556022 C T ZNF703 Missense_Mutation p.R535W 0.21 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 8 38111155 38111155 G A DDHD2 Missense_Mutation p.R658H 0.21 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 8 38879170 38879170 G A ADAM9 Missense_Mutation p.M227I 0.17 tolerated(0.36) benign(0.01) TCGA-A6-6781-01 8 41566368 41566368 G A ANK1 Silent p.A675A 0.19 TCGA-A6-6781-01 8 41791387 41791387 C G KAT6A Missense_Mutation p.A1451P 0.13 unknown(0) TCGA-A6-6781-01 8 42294816 42294816 G A SLC20A2 Missense_Mutation p.A405V 0.21 tolerated(0.33) benign(0.004) TCGA-A6-6781-01 8 48706940 48706940 C A PRKDC Missense_Mutation p.Q3526H 0.24 probably_damaging(0.985) TCGA-A6-6781-01 8 48882366 48882366 C T MCM4 Nonsense_Mutation p.R395* 0.23 TCGA-A6-6781-01 8 51314824 51314824 C T SNTG1 Missense_Mutation p.R28W 0.19 deleterious(0) probably_damaging(0.993) TCGA-A6-6781-01 8 53573774 53573774 C T RB1CC1 Missense_Mutation p.V476I 0.21 deleterious(0.05) benign(0.127) TCGA-A6-6781-01 8 53597959 53597959 G A RB1CC1 Missense_Mutation p.T24I 0.16 deleterious(0.02) possibly_damaging(0.776) TCGA-A6-6781-01 8 54669115 54669115 C T ATP6V1H Missense_Mutation p.R426Q 0.28 tolerated(0.71) possibly_damaging(0.738) TCGA-A6-6781-01 8 62546258 62546258 C T ASPH Silent p.Q306Q 0.17 TCGA-A6-6781-01 8 63659613 63659613 C T NKAIN3 Silent p.Y132Y 0.38 TCGA-A6-6781-01 8 63936645 63936645 G A GGH Silent p.S200S 0.21 TCGA-A6-6781-01 8 65493390 65493390 G A BHLHE22 Missense_Mutation p.D15N 0.27 deleterious_low_confidence(0.02) benign(0.057) TCGA-A6-6781-01 8 67790871 67790871 T - MCMDC2 Frame_Shift_Del p.L183Cfs*23 0.16 TCGA-A6-6781-01 8 68658271 68658271 G A CPA6 Missense_Mutation p.L32F 0.18 tolerated(0.68) possibly_damaging(0.506) TCGA-A6-6781-01 8 6913027 6913027 G A DEFA5 Missense_Mutation p.R71C 0.34 tolerated(0.18) benign(0.002) TCGA-A6-6781-01 8 70744206 70744206 C T SLCO5A1 Missense_Mutation p.G235S 0.24 deleterious(0.01) benign(0.23) TCGA-A6-6781-01 8 71487027 71487027 A - TRAM1 3'UTR 0.23 TCGA-A6-6781-01 8 72935264 72935264 C A TRPA1 Missense_Mutation p.E1079D 0.23 tolerated(0.29) benign(0.055) TCGA-A6-6781-01 8 74235196 74235196 G T RDH10 Silent p.A317A 0.22 TCGA-A6-6781-01 8 74717951 74717951 G A UBE2W Missense_Mutation p.P166L 0.26 deleterious(0.03) benign(0.052) TCGA-A6-6781-01 8 79609723 79609723 G A ZC2HC1A Missense_Mutation p.A196T 0.23 tolerated(0.52) benign(0) TCGA-A6-6781-01 8 8175997 8175997 C T SGK223 Silent p.L1296L 0.24 TCGA-A6-6781-01 8 8233818 8233819 - G SGK223 Frame_Shift_Ins p.K701Qfs*7 0.23 TCGA-A6-6781-01 8 86021673 86021673 G A LRRCC1 Intron 0.19 TCGA-A6-6781-01 8 86041561 86041562 - A LRRCC1 Frame_Shift_Ins p.T527Nfs*32 0.18 TCGA-A6-6781-01 8 88218257 88218257 G A CNBD1 Silent p.V156V 0.12 TCGA-A6-6781-01 8 91072389 91072389 C T CALB1 3'UTR 0.18 TCGA-A6-6781-01 8 95444680 95444680 C T FSBP Silent p.S193S 0.18 TCGA-A6-6781-01 8 95653517 95653517 C - ESRP1 5'UTR 0.25 TCGA-A6-6781-01 8 9565981 9565981 G A TNKS Silent p.P519P 0.22 TCGA-A6-6781-01 8 9567543 9567544 - A TNKS Frame_Shift_Ins p.N555Kfs*2 0.27 TCGA-A6-6781-01 8 95854638 95854638 G A INTS8 Silent p.L394L 0.26 TCGA-A6-6781-01 8 97256301 97256301 C T MTERFD1 Missense_Mutation p.R302H 0.21 tolerated(0.11) benign(0.001) TCGA-A6-6781-01 8 98289558 98289558 G A TSPYL5 Missense_Mutation p.A172V 0.24 tolerated(0.31) benign(0.089) TCGA-A6-6781-01 9 100000905 100000905 G T CCDC180 Intron 0.22 TCGA-A6-6781-01 9 101006377 101006377 G A TBC1D2 Silent p.C182C 0.18 TCGA-A6-6781-01 9 101552625 101552625 C T ANKS6 Missense_Mutation p.R208H 0.12 tolerated(0.3) benign(0.051) TCGA-A6-6781-01 9 101891256 101891256 G A TGFBR1 Missense_Mutation p.A73T 0.18 tolerated(0.55) benign(0.159) TCGA-A6-6781-01 9 102594989 102594989 G A NR4A3 Missense_Mutation p.A335T 0.17 deleterious(0) probably_damaging(0.954) TCGA-A6-6781-01 9 102814781 102814781 A - ERP44 Frame_Shift_Del p.F68Lfs*18 0.11 TCGA-A6-6781-01 9 104312898 104312898 G A RNF20 Missense_Mutation p.R368Q 0.35 tolerated(0.32) benign(0.238) TCGA-A6-6781-01 9 104432782 104432782 G A GRIN3A Missense_Mutation p.R638W 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 9 106901490 106901490 A G SMC2 Missense_Mutation p.D1163G 0.27 deleterious(0) probably_damaging(0.99) TCGA-A6-6781-01 9 107288801 107288801 C T OR13C4 Silent p.S230S 0.24 TCGA-A6-6781-01 9 107550810 107550810 C T ABCA1 Missense_Mutation p.G1989D 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 9 108270936 108270936 C T FSD1L Nonsense_Mutation p.R279* 0.17 TCGA-A6-6781-01 9 108425296 108425296 C - TAL2 3'UTR 0.15 TCGA-A6-6781-01 9 113168922 113168922 T C SVEP1 Silent p.S2986S 0.34 TCGA-A6-6781-01 9 113205880 113205880 G A SVEP1 Silent p.I1528I 0.25 TCGA-A6-6781-01 9 113530333 113530333 G T MUSK Missense_Mutation p.G385V 0.30 deleterious(0.01) possibly_damaging(0.61) TCGA-A6-6781-01 9 114449052 114449052 A - C9orf84 Frame_Shift_Del p.*1445E 0.26 TCGA-A6-6781-01 9 114453972 114453972 C A C9orf84 Missense_Mutation p.D1365Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-A6-6781-01 9 115337010 115337010 C T KIAA1958 Missense_Mutation p.A217V 0.21 deleterious(0.02) possibly_damaging(0.855) TCGA-A6-6781-01 9 115652539 115652539 C T SLC46A2 Silent p.A141A 0.14 TCGA-A6-6781-01 9 116060211 116060211 C T RNF183 Missense_Mutation p.R85H 0.17 tolerated(0.09) benign(0.01) TCGA-A6-6781-01 9 119463493 119463493 T - TRIM32 3'UTR 0.19 TCGA-A6-6781-01 9 124525921 124525921 C T DAB2IP Silent p.D408D 0.25 TCGA-A6-6781-01 9 125140277 125140277 G A PTGS1 Missense_Mutation p.G65D 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-A6-6781-01 9 125145942 125145942 G A PTGS1 Missense_Mutation p.R306H 0.29 deleterious(0) probably_damaging(0.997) TCGA-A6-6781-01 9 125240147 125240147 C T OR1J1 Missense_Mutation p.R20Q 0.27 tolerated_low_confidence(0.98) benign(0.001) TCGA-A6-6781-01 9 126136172 126136172 C T CRB2 Missense_Mutation p.P1121L 0.15 deleterious(0.03) benign(0.247) TCGA-A6-6781-01 9 126143664 126143664 G T DENND1A 3'UTR 0.24 TCGA-A6-6781-01 9 127216840 127216840 G A GPR144 Missense_Mutation p.D386N 0.19 tolerated(0.5) benign(0.001) TCGA-A6-6781-01 9 127262609 127262609 C T NR5A1 Silent p.P210P 0.14 TCGA-A6-6781-01 9 128509663 128509663 T C PBX3 5'Flank 0.19 TCGA-A6-6781-01 9 129598011 129598011 T - ZBTB43 3'UTR 0.20 TCGA-A6-6781-01 9 129644245 129644246 - T ZBTB34 3'UTR 0.25 TCGA-A6-6781-01 9 129851162 129851162 C T ANGPTL2 3'UTR 0.30 TCGA-A6-6781-01 9 130027117 130027117 G A GARNL3 5'UTR 0.22 TCGA-A6-6781-01 9 130074001 130074001 T - GARNL3 Frame_Shift_Del p.L104* 0.20 TCGA-A6-6781-01 9 130104514 130104514 A G GARNL3 Silent p.K384K 0.07 TCGA-A6-6781-01 9 130106596 130106596 C T GARNL3 Missense_Mutation p.A445V 0.19 tolerated(0.48) benign(0.439) TCGA-A6-6781-01 9 130160336 130160336 G - SLC2A8 Frame_Shift_Del p.G126Afs*14 0.12 TCGA-A6-6781-01 9 130206385 130206385 C - ZNF79 Frame_Shift_Del p.P137Lfs*17 0.13 TCGA-A6-6781-01 9 130479678 130479678 G A TTC16 Missense_Mutation p.R86H 0.11 deleterious(0) probably_damaging(0.982) TCGA-A6-6781-01 9 131022391 131022391 G A GOLGA2 Silent p.G585G 0.20 TCGA-A6-6781-01 9 131361436 131361436 C T SPTAN1 Intron 0.15 TCGA-A6-6781-01 9 131379981 131379981 T C SPTAN1 Missense_Mutation p.L1807P 0.13 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 9 131397011 131397011 G - WDR34 Frame_Shift_Del p.H391Tfs*8 0.19 TCGA-A6-6781-01 9 131468113 131468113 G - PKN3 Frame_Shift_Del p.A124Lfs*4 0.18 TCGA-A6-6781-01 9 13162713 13162713 A G MPDZ Silent p.D1112D 0.20 TCGA-A6-6781-01 9 131873765 131873765 C T PPP2R4 5'UTR 0.28 TCGA-A6-6781-01 9 133370291 133370291 C T ASS1 Silent p.H336H 0.18 TCGA-A6-6781-01 9 133512415 133512415 C T FUBP3 3'UTR 0.26 TCGA-A6-6781-01 9 133996518 133996518 G T AIF1L 3'UTR 0.36 TCGA-A6-6781-01 9 134305631 134305631 G A PRRC2B Missense_Mutation p.A34T 0.18 tolerated(1) benign(0.045) TCGA-A6-6781-01 9 134398561 134398561 C T POMT1 3'UTR 0.42 TCGA-A6-6781-01 9 135210025 135210025 T A SETX Missense_Mutation p.I270L 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-A6-6781-01 9 135939796 135939796 C T CEL Silent p.G27G 0.19 TCGA-A6-6781-01 9 135939854 135939854 G T CEL Missense_Mutation p.G47C 0.12 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 9 135947053 135947053 G C CEL Missense_Mutation p.A725P 0.19 deleterious_low_confidence(0.01) benign(0.001) TCGA-A6-6781-01 9 135947193 135947193 C - CEL 3'UTR 0.16 TCGA-A6-6781-01 9 136208361 136208361 G A MED22 Silent p.H199H 0.24 TCGA-A6-6781-01 9 136218170 136218170 C T RPL7A Silent p.I250I 0.13 TCGA-A6-6781-01 9 136319650 136319650 C T ADAMTS13 Missense_Mutation p.A1053V 0.29 tolerated(0.3) benign(0.053) TCGA-A6-6781-01 9 136405819 136405819 G A ADAMTSL2 Missense_Mutation p.C171Y 0.27 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 9 136573510 136573510 G A SARDH Nonsense_Mutation p.R457* 0.32 TCGA-A6-6781-01 9 136640093 136640093 C T VAV2 Missense_Mutation p.R700Q 0.18 deleterious(0) probably_damaging(0.95) TCGA-A6-6781-01 9 136901579 136901579 A T BRD3 Intron 0.06 TCGA-A6-6781-01 9 137698095 137698095 C T COL5A1 Missense_Mutation p.P1107S 0.18 unknown(0) TCGA-A6-6781-01 9 137982124 137982124 C T OLFM1 Silent p.V60V 0.27 TCGA-A6-6781-01 9 138236289 138236289 G A C9orf62 3'UTR 0.21 TCGA-A6-6781-01 9 138713261 138713261 C T CAMSAP1 Silent p.T1082T 0.26 TCGA-A6-6781-01 9 139368958 139368958 A G SEC16A Missense_Mutation p.L1037P 0.32 tolerated(1) benign(0) TCGA-A6-6781-01 9 139741075 139741075 T G C9orf172 Missense_Mutation p.S737A 0.23 deleterious(0) possibly_damaging(0.721) TCGA-A6-6781-01 9 139840435 139840435 C T C8G Silent p.G110G 0.12 TCGA-A6-6781-01 9 139905559 139905559 T G ABCA2 Splice_Site p.X1975_splice 0.20 TCGA-A6-6781-01 9 139925073 139925073 G A FUT7 3'UTR 0.29 TCGA-A6-6781-01 9 139990826 139990826 G A MAN1B1 Silent p.P201P 0.16 TCGA-A6-6781-01 9 140003011 140003011 G A MAN1B1 Missense_Mutation p.A690T 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 9 140358858 140358858 C T PNPLA7 Silent p.T1030T 0.16 TCGA-A6-6781-01 9 140372528 140372528 G A PNPLA7 Missense_Mutation p.T947M 0.33 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 9 140638415 140638415 C T EHMT1 Missense_Mutation p.S348L 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A6-6781-01 9 140772533 140772533 G A CACNA1B Missense_Mutation p.A50T 0.15 deleterious(0) benign(0.068) TCGA-A6-6781-01 9 140953064 140953064 G A CACNA1B Missense_Mutation p.R1451Q 0.31 deleterious(0) probably_damaging(0.982) TCGA-A6-6781-01 9 16436038 16436038 A G BNC2 Silent p.P718P 0.16 TCGA-A6-6781-01 9 16436375 16436375 G - BNC2 Frame_Shift_Del p.P606Rfs*7 0.27 TCGA-A6-6781-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.22 TCGA-A6-6781-01 9 17466048 17466048 G A CNTLN Missense_Mutation p.V1201I 0.26 deleterious(0.04) benign(0.06) TCGA-A6-6781-01 9 2047455 2047455 C T SMARCA2 Silent p.P339P 0.19 TCGA-A6-6781-01 9 21227346 21227346 A - IFNA17 3'UTR 0.18 TCGA-A6-6781-01 9 26892258 26892258 A G CAAP1 Intron 0.25 TCGA-A6-6781-01 9 26998048 26998048 G A LRRC19 Silent p.N91N 0.21 TCGA-A6-6781-01 9 27949099 27949099 G C LINGO2 Missense_Mutation p.T524S 0.20 tolerated(0.41) benign(0.013) TCGA-A6-6781-01 9 27949637 27949637 T C LINGO2 Missense_Mutation p.R345G 0.20 tolerated(1) benign(0) TCGA-A6-6781-01 9 2831319 2831319 C T KIAA0020 Missense_Mutation p.R181H 0.25 deleterious(0) probably_damaging(0.969) TCGA-A6-6781-01 9 33248522 33248522 C T SPINK4 3'UTR 0.15 TCGA-A6-6781-01 9 33294616 33294616 C T NFX1 Missense_Mutation p.P75L 0.24 deleterious(0.03) benign(0.001) TCGA-A6-6781-01 9 33466675 33466675 C T NOL6 Silent p.A661A 0.23 TCGA-A6-6781-01 9 34371553 34371553 G A KIAA1161 Silent p.D429D 0.29 TCGA-A6-6781-01 9 34372607 34372607 C T KIAA1161 Missense_Mutation p.R78H 0.17 tolerated(0.08) possibly_damaging(0.66) TCGA-A6-6781-01 9 34649478 34649478 C A GALT Missense_Mutation p.L326I 0.32 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 9 35059581 35059581 C T VCP Missense_Mutation p.R638H 0.27 deleterious(0.01) probably_damaging(1) TCGA-A6-6781-01 9 35711654 35711654 G A TLN1 Nonsense_Mutation p.R1273* 0.35 TCGA-A6-6781-01 9 35720500 35720500 T - TLN1 Frame_Shift_Del p.S405Afs*84 0.22 TCGA-A6-6781-01 9 35725280 35725281 - G TLN1 Frame_Shift_Ins p.K57Qfs*48 0.18 TCGA-A6-6781-01 9 36162510 36162510 G A GLIPR2 Silent p.P152P 0.12 TCGA-A6-6781-01 9 36352823 36352823 C T RNF38 Missense_Mutation p.R365Q 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-A6-6781-01 9 37020753 37020753 C T PAX5 Missense_Mutation p.R31Q 0.31 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 9 3898648 3898648 A - GLIS3 Intron 0.13 TCGA-A6-6781-01 9 5361787 5361787 A - PLGRKT Frame_Shift_Del p.F61Lfs*8 0.27 TCGA-A6-6781-01 9 6329012 6329012 G A TPD52L3 Nonsense_Mutation p.W139* 0.23 TCGA-A6-6781-01 9 6497290 6497290 G A UHRF2 Missense_Mutation p.R566H 0.19 deleterious(0) probably_damaging(0.996) TCGA-A6-6781-01 9 6604637 6604637 G A GLDC Nonsense_Mutation p.R337* 0.26 TCGA-A6-6781-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.15 deleterious(0.01) possibly_damaging(0.573) TCGA-A6-6781-01 9 71007348 71007348 C T PGM5 Silent p.R334R 0.22 TCGA-A6-6781-01 9 71155478 71155478 C - TMEM252 Frame_Shift_Del p.A85Pfs*7 0.18 TCGA-A6-6781-01 9 71835990 71835990 G - TJP2 Frame_Shift_Del p.R210Vfs*132 0.17 TCGA-A6-6781-01 9 72006830 72006830 C T FAM189A2 3'UTR 0.13 TCGA-A6-6781-01 9 75781107 75781107 C T ANXA1 Silent p.I267I 0.14 TCGA-A6-6781-01 9 79321872 79321872 G A PRUNE2 Missense_Mutation p.T1773M 0.22 tolerated(0.19) benign(0.005) TCGA-A6-6781-01 9 79936506 79936506 C T VPS13A Missense_Mutation p.P1892S 0.27 tolerated(0.13) benign(0.434) TCGA-A6-6781-01 9 84532979 84532979 T C SPATA31D5P RNA 0.14 TCGA-A6-6781-01 9 87317125 87317125 A G NTRK2 Silent p.E88E 0.16 TCGA-A6-6781-01 9 88937318 88937318 T C ZCCHC6 Missense_Mutation p.R984G 0.21 deleterious(0.01) benign(0.119) TCGA-A6-6781-01 9 91609148 91609148 C - C9orf47 3'UTR 0.21 TCGA-A6-6781-01 9 91609178 91609178 G A C9orf47 3'UTR 0.19 TCGA-A6-6781-01 9 91610725 91610725 A G C9orf47 3'UTR 0.07 TCGA-A6-6781-01 9 91994394 91994394 C T SEMA4D Missense_Mutation p.G605D 0.20 tolerated(0.13) benign(0.047) TCGA-A6-6781-01 9 92002474 92002474 A G SEMA4D Missense_Mutation p.L386S 0.16 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 9 94487060 94487060 C T ROR2 Silent p.S572S 0.29 TCGA-A6-6781-01 9 95077570 95077570 T C NOL8 Missense_Mutation p.N446S 0.20 tolerated(0.7) benign(0.002) TCGA-A6-6781-01 9 95575910 95575910 G A ANKRD19P RNA 0.16 TCGA-A6-6781-01 9 95765276 95765276 C T FGD3 Missense_Mutation p.R175W 0.23 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 9 96097742 96097742 G A C9orf129 Silent p.S93S 0.23 TCGA-A6-6781-01 9 96715335 96715335 C T BARX1 Missense_Mutation p.E120K 0.24 tolerated(0.2) benign(0.353) TCGA-A6-6781-01 9 97081322 97081322 G A NUTM2F Missense_Mutation p.R566C 0.35 tolerated(0.31) benign(0.002) TCGA-A6-6781-01 9 98229532 98229532 T G PTCH1 Missense_Mutation p.K809T 0.25 tolerated(0.28) benign(0.065) TCGA-A6-6781-01 9 98240451 98240451 G A PTCH1 Silent p.V411V 0.22 TCGA-A6-6781-01 9 99212560 99212560 G A HABP4 5'UTR 0.17 TCGA-A6-6781-01 9 99227746 99227746 C T HABP4 Nonsense_Mutation p.R214* 0.20 TCGA-A6-6781-01 9 99521654 99521654 T G ZNF510 Missense_Mutation p.K486N 0.23 deleterious(0) probably_damaging(0.998) TCGA-A6-6781-01 X 100880348 100880349 - T ARMCX3 Frame_Shift_Ins p.C128Lfs*4 0.32 TCGA-A6-6781-01 X 10098023 10098023 C T WWC3 Silent p.S820S 0.36 TCGA-A6-6781-01 X 103040663 103040663 A - PLP1 Frame_Shift_Del p.N54Tfs*11 0.15 TCGA-A6-6781-01 X 103045590 103045590 G A PLP1 3'UTR 0.47 TCGA-A6-6781-01 X 106070675 106070675 T - TBC1D8B Intron 0.38 TCGA-A6-6781-01 X 106890856 106890856 C T PRPS1 Missense_Mutation p.T242I 0.51 tolerated(0.11) benign(0.01) TCGA-A6-6781-01 X 110970861 110970861 C T ALG13 Missense_Mutation p.R704C 0.44 deleterious(0) probably_damaging(0.996) TCGA-A6-6781-01 X 112022308 112022308 G T AMOT Missense_Mutation p.A1025D 0.45 unknown(0) TCGA-A6-6781-01 X 117695460 117695460 G A DOCK11 Missense_Mutation p.A225T 0.44 tolerated(0.35) benign(0.426) TCGA-A6-6781-01 X 117707830 117707830 C T DOCK11 Missense_Mutation p.A413V 0.46 deleterious(0.02) probably_damaging(0.916) TCGA-A6-6781-01 X 118370651 118370651 C T PGRMC1 Missense_Mutation p.P109S 0.40 deleterious(0) probably_damaging(0.983) TCGA-A6-6781-01 X 118673613 118673613 G A CXorf56 3'UTR 0.26 TCGA-A6-6781-01 X 118893451 118893451 C T SOWAHD Missense_Mutation p.A274V 0.43 tolerated(0.25) benign(0.054) TCGA-A6-6781-01 X 12156928 12156928 G A FRMPD4 5'UTR 0.45 TCGA-A6-6781-01 X 123205001 123205001 C A STAG2 Silent p.A787A 0.53 TCGA-A6-6781-01 X 128657177 128657179 CTT - SMARCA1 In_Frame_Del p.K57del 0.47 TCGA-A6-6781-01 X 129155009 129155009 G - BCORL1 Frame_Shift_Del p.A1166Lfs*56 0.29 TCGA-A6-6781-01 X 129771200 129771200 T C ENOX2 Intron 0.55 TCGA-A6-6781-01 X 132159625 132159625 C T USP26 Missense_Mutation p.R875H 0.45 tolerated(0.1) benign(0.039) TCGA-A6-6781-01 X 134305119 134305119 T C CT55 5'UTR 0.34 TCGA-A6-6781-01 X 135494468 135494468 C T GPR112 Missense_Mutation p.R2994W 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-A6-6781-01 X 135956106 135956106 C T RBMX 3'UTR 0.19 TCGA-A6-6781-01 X 13618205 13618205 C T EGFL6 Missense_Mutation p.T131M 0.63 deleterious(0) probably_damaging(0.987) TCGA-A6-6781-01 X 13681068 13681068 G T TCEANC Missense_Mutation p.K177N 0.43 tolerated(0.52) benign(0.006) TCGA-A6-6781-01 X 149013468 149013468 G A MAGEA8 Missense_Mutation p.S141N 0.11 tolerated(0.32) possibly_damaging(0.809) TCGA-A6-6781-01 X 149905864 149905864 G T MTMR1 Nonsense_Mutation p.G465* 0.51 TCGA-A6-6781-01 X 150906962 150906963 - A CNGA2 Frame_Shift_Ins p.T5Nfs*11 0.25 TCGA-A6-6781-01 X 151899358 151899358 T - MAGEA12 3'UTR 0.50 TCGA-A6-6781-01 X 153035339 153035339 G A PLXNB3 Missense_Mutation p.C548Y 0.42 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 X 153055243 153055243 G A IDH3G Silent p.H90H 0.62 TCGA-A6-6781-01 X 153178995 153178995 G A ARHGAP4 Silent p.D438D 0.41 TCGA-A6-6781-01 X 153187059 153187059 G A ARHGAP4 Missense_Mutation p.R91W 0.48 deleterious(0) probably_damaging(1) TCGA-A6-6781-01 X 153630963 153630963 C - DNASE1L1 3'UTR 0.41 TCGA-A6-6781-01 X 15365350 15365350 C T FIGF Missense_Mutation p.E292K 0.49 deleterious(0.03) benign(0.206) TCGA-A6-6781-01 X 155010164 155010164 T - SPRY3 3'UTR 0.39 TCGA-A6-6781-01 X 1571804 1571804 A - ASMTL 5'Flank 0.29 TCGA-A6-6781-01 X 18954183 18954183 G A PHKA2 Missense_Mutation p.P376L 0.52 deleterious(0.03) possibly_damaging(0.828) TCGA-A6-6781-01 X 24006559 24006559 C T KLHL15 Missense_Mutation p.G432S 0.47 deleterious(0) probably_damaging(0.999) TCGA-A6-6781-01 X 27765444 27765444 G A DCAF8L2 Silent p.E144E 0.44 TCGA-A6-6781-01 X 34149420 34149420 G A FAM47A Missense_Mutation p.R326C 0.49 tolerated(0.31) benign(0.339) TCGA-A6-6781-01 X 37312475 37312475 G A PRRG1 Silent p.P86P 0.49 TCGA-A6-6781-01 X 41207100 41207100 T - DDX3X 3'UTR 0.31 TCGA-A6-6781-01 X 47070573 47070573 G A UBA1 Missense_Mutation p.V805I 0.27 tolerated(0.1) benign(0.025) TCGA-A6-6781-01 X 47072566 47072566 G A UBA1 Missense_Mutation p.A942T 0.48 deleterious(0.01) probably_damaging(0.928) TCGA-A6-6781-01 X 47444740 47444740 C T TIMP1 Intron 0.42 TCGA-A6-6781-01 X 48826069 48826069 C T KCND1 Missense_Mutation p.V204M 0.32 deleterious(0.03) possibly_damaging(0.77) TCGA-A6-6781-01 X 49072932 49072932 C T CACNA1F Missense_Mutation p.R1060Q 0.45 deleterious(0) benign(0.301) TCGA-A6-6781-01 X 49957285 49957285 G A AKAP4 Silent p.N693N 0.44 TCGA-A6-6781-01 X 53570922 53570922 G A HUWE1 Silent p.S3753S 0.67 TCGA-A6-6781-01 X 54019233 54019233 C A PHF8 Missense_Mutation p.D592Y 0.45 deleterious(0.01) possibly_damaging(0.7) TCGA-A6-6781-01 X 54275456 54275456 G A WNK3 Nonsense_Mutation p.R1109* 0.08 TCGA-A6-6781-01 X 54360020 54360020 G A WNK3 Silent p.V29V 0.38 TCGA-A6-6781-01 X 54496803 54496803 C T FGD1 Silent p.S249S 0.43 TCGA-A6-6781-01 X 54836462 54836462 T C MAGED2 Missense_Mutation p.M118T 0.51 tolerated_low_confidence(0.08) benign(0.055) TCGA-A6-6781-01 X 55783756 55783756 C T RRAGB Missense_Mutation p.P340L 0.46 deleterious(0.04) benign(0.032) TCGA-A6-6781-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.36 TCGA-A6-6781-01 X 57162952 57162952 T C SPIN2A Missense_Mutation p.M27V 0.33 tolerated(0.12) benign(0.001) TCGA-A6-6781-01 X 5947360 5947360 C T NLGN4X Missense_Mutation p.V196I 0.45 deleterious(0) possibly_damaging(0.893) TCGA-A6-6781-01 X 63412648 63412648 A - AMER1 Frame_Shift_Del p.F173Lfs*36 0.41 TCGA-A6-6781-01 X 64137729 64137729 G A ZC4H2 Silent p.C203C 0.38 TCGA-A6-6781-01 X 6452047 6452047 C T VCX3A Silent p.Q100Q 0.31 TCGA-A6-6781-01 X 69508007 69508007 C T PDZD11 Missense_Mutation p.R63Q 0.37 tolerated(0.11) benign(0.098) TCGA-A6-6781-01 X 69670126 69670126 C T DLG3 Missense_Mutation p.R271C 0.31 deleterious(0) benign(0.066) TCGA-A6-6781-01 X 70327614 70327614 G - IL2RG Frame_Shift_Del p.P361Hfs*5 0.35 TCGA-A6-6781-01 X 70349909 70349909 A G MED12 Missense_Mutation p.K1298E 0.48 benign(0.359) TCGA-A6-6781-01 X 70444047 70444047 C T GJB1 Missense_Mutation p.R164W 0.35 tolerated(0.06) probably_damaging(0.997) TCGA-A6-6781-01 X 71352009 71352009 C A NHSL2 Missense_Mutation p.L121I 0.45 tolerated(0.06) probably_damaging(0.923) TCGA-A6-6781-01 X 72667325 72667325 C T CDX4 Missense_Mutation p.P79L 0.39 tolerated(0.13) possibly_damaging(0.771) TCGA-A6-6781-01 X 79699145 79699146 - C FAM46D Frame_Shift_Ins p.V372Rfs*2 0.39 TCGA-A6-6781-01 X 79952245 79952245 A G BRWD3 Missense_Mutation p.S1021P 0.46 deleterious(0.05) benign(0.214) TCGA-A6-6781-01 X 8433983 8433983 G A VCX3B Silent p.Q100Q 0.40 TCGA-A6-6781-01 X 84362345 84362345 G A SATL1 Nonsense_Mutation p.R544* 0.56 TCGA-A6-6781-01 X 86890729 86890729 G A KLHL4 Missense_Mutation p.A627T 0.42 tolerated(0.11) benign(0.272) TCGA-A6-6781-01 X 8763345 8763346 - CTG FAM9A In_Frame_Ins p.A201dup 0.50 TCGA-A6-6781-01 X 90691924 90691924 T - PABPC5 3'UTR 0.30 TCGA-A6-6781-01 X 92965993 92965993 T - FAM133A 3'UTR 0.40 TCGA-A6-6782-01 10 101370693 101370693 G A SLC25A28 Silent p.I336I 0.12 TCGA-A6-6782-01 10 123263402 123263402 T C FGFR2 Missense_Mutation p.I448M 0.15 deleterious(0.01) possibly_damaging(0.861) TCGA-A6-6782-01 10 16911792 16911792 G A CUBN Silent p.Y3099Y 0.19 TCGA-A6-6782-01 10 61815445 61815445 C A ANK3 Nonsense_Mutation p.E4346* 0.35 TCGA-A6-6782-01 10 62631970 62631970 G A RHOBTB1 Missense_Mutation p.R632C 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-A6-6782-01 10 76861717 76861717 T C DUSP13 Intron 0.12 TCGA-A6-6782-01 10 77542693 77542693 C T C10orf11 5'UTR 0.15 TCGA-A6-6782-01 11 100833156 100833156 C A ARHGAP42 Missense_Mutation p.L468M 0.23 deleterious(0) probably_damaging(0.998) TCGA-A6-6782-01 11 102738681 102738681 G A MMP12 RNA 0.34 TCGA-A6-6782-01 11 128781322 128781322 C T KCNJ5 Missense_Mutation p.R52C 0.37 deleterious(0.02) probably_damaging(1) TCGA-A6-6782-01 11 299470 299470 G A IFITM5 Silent p.R7R 0.21 TCGA-A6-6782-01 11 57982473 57982473 C T OR1S1 Missense_Mutation p.S86F 0.18 tolerated(1) benign(0.09) TCGA-A6-6782-01 11 5799746 5799746 C A OR52N5 Missense_Mutation p.C40F 0.31 tolerated(0.08) benign(0.053) TCGA-A6-6782-01 11 60711236 60711236 G A SLC15A3 Silent p.I307I 0.32 TCGA-A6-6782-01 11 61253849 61253849 G C PPP1R32 Missense_Mutation p.D241H 0.17 deleterious(0.02) benign(0.082) TCGA-A6-6782-01 11 89155069 89155069 C A NOX4 Splice_Site p.X210_splice 0.07 TCGA-A6-6782-01 11 95568511 95568511 G T MTMR2 Silent p.S625S 0.34 TCGA-A6-6782-01 11 99690481 99690481 G T CNTN5 Missense_Mutation p.A88S 0.28 tolerated(0.71) benign(0.156) TCGA-A6-6782-01 12 10954409 10954409 G C TAS2R7 Missense_Mutation p.A254G 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-6782-01 12 109577443 109577443 C T ACACB Missense_Mutation p.S78F 0.15 deleterious_low_confidence(0) benign(0.429) TCGA-A6-6782-01 12 128900007 128900007 C T TMEM132C Silent p.V272V 0.35 TCGA-A6-6782-01 12 27628603 27628603 G A SMCO2 Missense_Mutation p.G151R 0.19 tolerated(0.05) benign(0) TCGA-A6-6782-01 12 32138345 32138345 G A KIAA1551 Missense_Mutation p.V1486M 0.33 tolerated(0.72) benign(0.021) TCGA-A6-6782-01 12 55725485 55725485 A C OR6C3 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.651) TCGA-A6-6782-01 12 55759368 55759368 A G OR6C75 Silent p.V158V 0.20 TCGA-A6-6782-01 12 56515331 56515331 C A ZC3H10 Missense_Mutation p.Q329K 0.37 tolerated(0.05) benign(0.23) TCGA-A6-6782-01 13 101726981 101726981 G A NALCN Silent p.V1329V 0.16 TCGA-A6-6782-01 13 114784357 114784357 A G RASA3 Missense_Mutation p.L275P 0.08 tolerated(0.25) benign(0) TCGA-A6-6782-01 13 23907736 23907736 C T SACS Missense_Mutation p.G3427R 0.19 probably_damaging(0.999) TCGA-A6-6782-01 13 25015995 25015995 C T PARP4 Missense_Mutation p.V1219I 0.46 tolerated(0.5) benign(0.053) TCGA-A6-6782-01 13 27680027 27680027 G C USP12 Missense_Mutation p.P62A 0.44 deleterious(0.02) probably_damaging(0.927) TCGA-A6-6782-01 13 32761702 32761702 G T FRY Missense_Mutation p.C1167F 0.07 deleterious(0) probably_damaging(0.976) TCGA-A6-6782-01 13 42142399 42142399 C T VWA8 Missense_Mutation p.M1884I 0.13 deleterious(0.02) probably_damaging(0.93) TCGA-A6-6782-01 13 78492641 78492641 C T EDNRB Missense_Mutation p.R113Q 0.09 tolerated_low_confidence(0.56) benign(0.114) TCGA-A6-6782-01 14 21871680 21871680 A C CHD8 Missense_Mutation p.H1150Q 0.55 deleterious(0) probably_damaging(0.986) TCGA-A6-6782-01 14 24975714 24975714 A C CMA1 Nonsense_Mutation p.Y102* 0.08 TCGA-A6-6782-01 14 64489535 64489535 C A SYNE2 Nonsense_Mutation p.S1864* 0.51 TCGA-A6-6782-01 15 102215935 102215935 T C TARSL2 Silent p.E552E 0.10 TCGA-A6-6782-01 15 52244057 52244057 C T LEO1 Missense_Mutation p.R532H 0.65 deleterious(0.02) benign(0.192) TCGA-A6-6782-01 15 67873159 67873159 G T MAP2K5 Missense_Mutation p.R107I 0.56 deleterious(0) probably_damaging(0.909) TCGA-A6-6782-01 15 77908074 77908074 G A LINGO1 Missense_Mutation p.R59C 0.28 deleterious(0) probably_damaging(0.992) TCGA-A6-6782-01 16 50069389 50069389 T C CNEP1R1 3'UTR 0.35 TCGA-A6-6782-01 16 81969978 81969978 C T PLCG2 Missense_Mutation p.T1016M 0.15 deleterious(0) probably_damaging(1) TCGA-A6-6782-01 16 84230276 84230276 G A ADAD2 Missense_Mutation p.R599H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-A6-6782-01 17 10267818 10267818 A C MYH13 Missense_Mutation p.F10L 0.43 tolerated(0.19) probably_damaging(0.965) TCGA-A6-6782-01 17 29062090 29062090 C T CTD-2349P21.5 3'Flank 0.45 TCGA-A6-6782-01 17 54431319 54431319 C T ANKFN1 Silent p.G174G 0.12 TCGA-A6-6782-01 17 60814118 60814118 G T MARCH10 Missense_Mutation p.Q371K 0.47 deleterious(0.02) possibly_damaging(0.606) TCGA-A6-6782-01 17 66416624 66416624 C T ARSG 3'UTR 0.14 TCGA-A6-6782-01 17 7578217 7578217 G A TP53 Missense_Mutation p.T211I 0.49 deleterious(0.02) probably_damaging(0.96) TCGA-A6-6782-01 17 8046753 8046753 C T PER1 Missense_Mutation p.R968H 0.39 tolerated(0.09) benign(0.001) TCGA-A6-6782-01 19 12175583 12175583 C G ZNF844 5'UTR 0.39 TCGA-A6-6782-01 19 20228962 20228962 C T ZNF90 Missense_Mutation p.T200I 0.42 tolerated(0.13) benign(0.326) TCGA-A6-6782-01 19 20308553 20308553 C T ZNF486 Missense_Mutation p.T345M 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-A6-6782-01 19 21132356 21132356 A T ZNF85 Nonsense_Mutation p.K346* 0.21 TCGA-A6-6782-01 19 34833055 34833055 A T KIAA0355 Missense_Mutation p.Q739L 0.30 tolerated_low_confidence(0.15) probably_damaging(0.946) TCGA-A6-6782-01 19 46181212 46181212 C A GIPR Missense_Mutation p.L325M 0.22 deleterious(0.05) probably_damaging(0.995) TCGA-A6-6782-01 19 54410065 54410065 C T PRKCG Silent p.F670F 0.52 TCGA-A6-6782-01 19 8808196 8808196 G A ACTL9 Missense_Mutation p.R286C 0.38 deleterious(0.02) benign(0.024) TCGA-A6-6782-01 19 9064800 9064800 G T MUC16 Missense_Mutation p.T7549N 0.25 unknown(0) TCGA-A6-6782-01 19 9088845 9088845 A C MUC16 Silent p.T990T 0.13 TCGA-A6-6782-01 1 117620557 117620557 C T TTF2 Silent p.H531H 0.39 TCGA-A6-6782-01 1 11900252 11900252 G A CLCN6 Missense_Mutation p.R861Q 0.33 tolerated(0.1) benign(0.055) TCGA-A6-6782-01 1 145663167 145663167 C T RNF115 Silent p.G76G 0.29 TCGA-A6-6782-01 1 149883483 149883483 A G SV2A Silent p.G224G 0.24 TCGA-A6-6782-01 1 162725489 162725489 C T DDR2 Nonsense_Mutation p.Q201* 0.35 TCGA-A6-6782-01 1 169761901 169761901 C G METTL18 Silent p.L312L 0.10 TCGA-A6-6782-01 1 181021582 181021582 C A MR1 Missense_Mutation p.S272R 0.16 deleterious(0.04) possibly_damaging(0.873) TCGA-A6-6782-01 1 185976275 185976275 C T HMCN1 Silent p.G1497G 0.28 TCGA-A6-6782-01 1 204512007 204512007 T A MDM4 Missense_Mutation p.L203I 0.09 tolerated(0.16) possibly_damaging(0.45) TCGA-A6-6782-01 1 228509579 228509579 C T OBSCN Missense_Mutation p.R5970W 0.39 probably_damaging(0.984) TCGA-A6-6782-01 1 236883484 236883484 G A ACTN2 Silent p.S147S 0.28 TCGA-A6-6782-01 1 23847466 23847466 G A E2F2 Nonsense_Mutation p.Q226* 0.38 TCGA-A6-6782-01 1 32937156 32937156 G A ZBTB8B Missense_Mutation p.A311T 0.32 tolerated(0.43) benign(0.001) TCGA-A6-6782-01 1 46212041 46212041 A T IPP Missense_Mutation p.S15T 0.12 tolerated(0.27) benign(0.001) TCGA-A6-6782-01 1 53558446 53558446 C T SLC1A7 Missense_Mutation p.G271S 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-A6-6782-01 1 67450613 67450613 T G MIER1 3'UTR 0.36 TCGA-A6-6782-01 20 18790522 18790522 C T C20orf78 Silent p.R118R 0.09 TCGA-A6-6782-01 20 18790651 18790651 A T C20orf78 Silent p.L75L 0.20 TCGA-A6-6782-01 20 2413193 2413193 C T TGM6 Silent p.S675S 0.25 TCGA-A6-6782-01 20 31682938 31682938 A G BPIFB4 Silent p.T459T 0.43 TCGA-A6-6782-01 20 3303343 3303343 G T C20orf194 Silent p.R422R 0.15 TCGA-A6-6782-01 20 334298 334298 G A NRSN2 3'UTR 0.13 TCGA-A6-6782-01 20 398431 398431 G A RBCK1 Missense_Mutation p.R106Q 0.19 tolerated(0.34) possibly_damaging(0.493) TCGA-A6-6782-01 20 48604457 48604457 G A SNAI1 Missense_Mutation p.R220H 0.12 deleterious(0) probably_damaging(0.997) TCGA-A6-6782-01 20 62070961 62070961 G A KCNQ2 Missense_Mutation p.A306V 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-A6-6782-01 20 7886916 7886916 G A HAO1 Silent p.D202D 0.06 TCGA-A6-6782-01 21 27840740 27840740 T C CYYR1 3'UTR 0.26 TCGA-A6-6782-01 22 17619024 17619024 C T CECR5 Missense_Mutation p.G387R 0.32 deleterious(0) probably_damaging(0.915) TCGA-A6-6782-01 22 19751777 19751777 G A TBX1 Silent p.A204A 0.30 TCGA-A6-6782-01 22 24647867 24647867 T C POM121L9P RNA 0.15 TCGA-A6-6782-01 22 39413827 39413827 C T APOBEC3C Silent p.D77D 0.19 TCGA-A6-6782-01 2 102959761 102959761 G A IL1RL1 Missense_Mutation p.V286I 0.36 tolerated(0.57) benign(0.034) TCGA-A6-6782-01 2 10917731 10917731 T A ATP6V1C2 Silent p.L282L 0.11 TCGA-A6-6782-01 2 136567502 136567502 G A LCT Silent p.F805F 0.16 TCGA-A6-6782-01 2 136872553 136872553 G A CXCR4 Silent p.H319H 0.34 TCGA-A6-6782-01 2 141130650 141130650 A G LRP1B Silent p.C3565C 0.09 TCGA-A6-6782-01 2 170411647 170411647 C T FASTKD1 Missense_Mutation p.E401K 0.16 tolerated(0.41) benign(0.085) TCGA-A6-6782-01 2 181927697 181927697 G T UBE2E3 3'UTR 0.28 TCGA-A6-6782-01 2 21225418 21225418 G C APOB Silent p.T4292T 0.34 TCGA-A6-6782-01 2 222428512 222428512 C T EPHA4 Silent p.L254L 0.37 TCGA-A6-6782-01 2 227985767 227985767 C T COL4A4 Missense_Mutation p.R97H 0.38 benign(0.054) TCGA-A6-6782-01 2 238285512 238285512 C T COL6A3 Silent p.A991A 0.19 TCGA-A6-6782-01 2 23980510 23980510 G A ATAD2B Nonsense_Mutation p.Q1286* 0.08 TCGA-A6-6782-01 2 242373601 242373601 T A FARP2 Nonsense_Mutation p.L299* 0.07 TCGA-A6-6782-01 2 37255900 37255900 A T HEATR5B Missense_Mutation p.H1175Q 0.35 deleterious(0.03) possibly_damaging(0.905) TCGA-A6-6782-01 2 50573945 50573945 G A NRXN1 Intron 0.25 TCGA-A6-6782-01 2 54483080 54483080 G A TSPYL6 Missense_Mutation p.T70I 0.70 tolerated(0.09) benign(0.043) TCGA-A6-6782-01 2 74641991 74641991 C T C2orf81 Missense_Mutation p.R411Q 0.14 tolerated(0.74) benign(0.003) TCGA-A6-6782-01 3 112324378 112324378 G C CCDC80 Missense_Mutation p.C913W 0.15 deleterious(0) probably_damaging(0.998) TCGA-A6-6782-01 3 121725872 121725872 G T ILDR1 Missense_Mutation p.F65L 0.17 deleterious(0) probably_damaging(0.952) TCGA-A6-6782-01 3 12626043 12626043 C T RAF1 Silent p.L639L 0.15 TCGA-A6-6782-01 3 130098805 130098805 T G COL6A5 Silent p.T404T 0.15 TCGA-A6-6782-01 3 133475793 133475793 C T TF Silent p.V270V 0.42 TCGA-A6-6782-01 3 142681143 142681143 A T PAQR9 Missense_Mutation p.F346I 0.15 tolerated(0.25) benign(0.026) TCGA-A6-6782-01 3 146311787 146311787 C A PLSCR5 Missense_Mutation p.D125Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-A6-6782-01 3 169802126 169802126 G C GPR160 Silent p.L122L 0.21 TCGA-A6-6782-01 3 39179858 39179858 A G TTC21A Missense_Mutation p.H1266R 0.41 deleterious(0.03) benign(0.25) TCGA-A6-6782-01 3 44284912 44284912 C G TOPAZ1 Missense_Mutation p.T305S 0.19 tolerated(0.28) benign(0.003) TCGA-A6-6782-01 3 46307499 46307499 C A CCR3 Missense_Mutation p.L305M 0.21 deleterious(0.05) benign(0.037) TCGA-A6-6782-01 3 77629123 77629123 G A ROBO2 Missense_Mutation p.R801Q 0.07 deleterious(0.04) possibly_damaging(0.553) TCGA-A6-6782-01 3 93646156 93646156 A C PROS1 Missense_Mutation p.C58G 0.29 deleterious(0) probably_damaging(1) TCGA-A6-6782-01 4 107845718 107845718 C A DKK2 Missense_Mutation p.K171N 0.31 deleterious(0) probably_damaging(0.987) TCGA-A6-6782-01 4 109839333 109839333 G A COL25A1 Nonsense_Mutation p.Q259* 0.26 TCGA-A6-6782-01 4 118975347 118975347 C T NDST3 Silent p.D94D 0.31 TCGA-A6-6782-01 4 23815992 23815992 T A PPARGC1A Nonsense_Mutation p.K372* 0.11 TCGA-A6-6782-01 4 23815993 23815993 C A PPARGC1A Missense_Mutation p.R371S 0.12 tolerated(0.11) possibly_damaging(0.576) TCGA-A6-6782-01 4 24802159 24802159 C A SOD3 3'UTR 0.12 TCGA-A6-6782-01 4 48636383 48636383 A G FRYL Silent p.Y15Y 0.33 TCGA-A6-6782-01 4 68606388 68606389 AG - GNRHR Frame_Shift_Del p.L266Kfs*27 0.23 TCGA-A6-6782-01 5 112174043 112174043 G T APC Nonsense_Mutation p.E918* 0.21 TCGA-A6-6782-01 5 112175246 112175246 C - APC Frame_Shift_Del p.P1319Lfs*2 0.19 TCGA-A6-6782-01 5 136328254 136328254 G A SPOCK1 Missense_Mutation p.R209W 0.36 deleterious(0) probably_damaging(1) TCGA-A6-6782-01 5 140168090 140168090 C G PCDHA1 Missense_Mutation p.L739V 0.30 deleterious_low_confidence(0.05) benign(0.335) TCGA-A6-6782-01 5 14508132 14508132 C T TRIO Silent p.L2965L 0.35 TCGA-A6-6782-01 5 177637556 177637556 C T HNRNPAB Nonsense_Mutation p.Q311* 0.29 TCGA-A6-6782-01 5 23522838 23522838 G T PRDM9 Silent p.L242L 0.33 TCGA-A6-6782-01 5 35957404 35957404 C A UGT3A1 Missense_Mutation p.A321S 0.28 tolerated(0.18) benign(0.14) TCGA-A6-6782-01 5 41181574 41181574 A C C6 Missense_Mutation p.S272A 0.12 tolerated(0.3) benign(0.002) TCGA-A6-6782-01 5 43245861 43245861 G A NIM1K 5'UTR 0.53 TCGA-A6-6782-01 5 83259089 83259089 G C EDIL3 Missense_Mutation p.L410V 0.07 tolerated(1) benign(0.042) TCGA-A6-6782-01 6 1314399 1314399 C T FOXQ1 3'UTR 0.07 TCGA-A6-6782-01 6 152532698 152532698 C T SYNE1 Missense_Mutation p.R7507H 0.16 possibly_damaging(0.816) TCGA-A6-6782-01 6 152639236 152639236 G A SYNE1 Missense_Mutation p.R5518W 0.20 possibly_damaging(0.708) TCGA-A6-6782-01 6 166952263 166952263 C T RPS6KA2 Missense_Mutation p.V45I 0.35 tolerated(0.64) benign(0.002) TCGA-A6-6782-01 6 26157334 26157334 G A HIST1H1E 3'UTR 0.25 TCGA-A6-6782-01 6 30860850 30860850 G T DDR1 Missense_Mutation p.V369L 0.12 tolerated(0.59) benign(0.009) TCGA-A6-6782-01 6 33146855 33146855 G A COL11A2 Nonsense_Mutation p.R450* 0.36 TCGA-A6-6782-01 6 5431294 5431294 G C FARS2 Missense_Mutation p.D265H 0.38 deleterious(0) probably_damaging(0.915) TCGA-A6-6782-01 6 65523431 65523431 G A EYS Nonsense_Mutation p.Q1095* 0.26 TCGA-A6-6782-01 6 66044846 66044846 T G EYS Intron 0.11 TCGA-A6-6782-01 6 76023744 76023744 C A FILIP1 Missense_Mutation p.G602C 0.28 tolerated(0.1) possibly_damaging(0.838) TCGA-A6-6782-01 6 76715225 76715225 G A IMPG1 Missense_Mutation p.T305M 0.29 tolerated(0.64) benign(0.023) TCGA-A6-6782-01 7 100686257 100686257 T A MUC17 Missense_Mutation p.S3854T 0.18 benign(0.002) TCGA-A6-6782-01 7 100686258 100686258 C A MUC17 Nonsense_Mutation p.S3854* 0.19 TCGA-A6-6782-01 7 100867230 100867230 G A ZNHIT1 Nonsense_Mutation p.W152* 0.21 TCGA-A6-6782-01 7 100875614 100875614 T C CLDN15 3'UTR 0.58 TCGA-A6-6782-01 7 126698170 126698170 G A GRM8 Intron 0.08 TCGA-A6-6782-01 7 131853172 131853172 C T PLXNA4 Missense_Mutation p.V1393M 0.30 deleterious(0) probably_damaging(0.919) TCGA-A6-6782-01 7 142334749 142334749 T C TRBV20-1 Silent p.S57S 0.12 TCGA-A6-6782-01 7 18674251 18674251 A G HDAC9 Silent p.E266E 0.26 TCGA-A6-6782-01 7 2951848 2951848 G A CARD11 Silent p.F1034F 0.13 TCGA-A6-6782-01 7 43351528 43351528 G A HECW1 Missense_Mutation p.R65H 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-6782-01 7 44079197 44079197 C A LINC00957 RNA 0.16 TCGA-A6-6782-01 7 45649982 45649982 G A ADCY1 Missense_Mutation p.R265Q 0.36 deleterious(0) possibly_damaging(0.783) TCGA-A6-6782-01 7 550468 550468 C T PDGFA Missense_Mutation p.R144H 0.24 deleterious(0.02) probably_damaging(0.967) TCGA-A6-6782-01 7 72732998 72732998 G A TRIM50 Silent p.H183H 0.10 TCGA-A6-6782-01 7 82585562 82585562 A G PCLO Silent p.A1569A 0.11 TCGA-A6-6782-01 7 92735273 92735273 C A SAMD9 Missense_Mutation p.L46F 0.07 deleterious(0) probably_damaging(1) TCGA-A6-6782-01 7 99030964 99030964 C T ATP5J2-PTCD1 Silent p.T226T 0.31 TCGA-A6-6782-01 8 12957606 12957606 G A DLC1 Missense_Mutation p.S747L 0.19 deleterious(0.04) probably_damaging(0.941) TCGA-A6-6782-01 8 71499153 71499153 A T TRAM1 Missense_Mutation p.F241L 0.17 deleterious(0.04) possibly_damaging(0.706) TCGA-A6-6782-01 8 71499155 71499155 A T TRAM1 Missense_Mutation p.F241I 0.16 deleterious(0) possibly_damaging(0.904) TCGA-A6-6782-01 8 79646010 79646010 T C IL7 Missense_Mutation p.R158G 0.09 tolerated(0.12) benign(0.415) TCGA-A6-6782-01 9 101056068 101056068 G C GABBR2 Missense_Mutation p.H887D 0.19 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-A6-6782-01 9 106882380 106882380 T A SMC2 Missense_Mutation p.I690N 0.30 tolerated(0.48) benign(0) TCGA-A6-6782-01 9 124094852 124094852 G T GSN Missense_Mutation p.D774Y 0.09 deleterious(0) benign(0.038) TCGA-A6-6782-01 9 125239588 125239588 G A OR1J1 Silent p.A206A 0.11 TCGA-A6-6782-01 9 130169527 130169527 G A SLC2A8 Silent p.%3D 0.48 TCGA-A6-6782-01 9 135203551 135203551 C A SETX Missense_Mutation p.R1145L 0.23 tolerated(0.25) benign(0.002) TCGA-A6-6782-01 9 18777711 18777711 C T ADAMTSL1 Missense_Mutation p.R1162C 0.20 deleterious(0) possibly_damaging(0.886) TCGA-A6-6782-01 9 27455626 27455626 A G MOB3B 5'UTR 0.29 TCGA-A6-6782-01 9 72892258 72892258 G A SMC5 Missense_Mutation p.R138H 0.11 deleterious(0) probably_damaging(1) TCGA-A6-6782-01 9 73461386 73461386 A C TRPM3 Missense_Mutation p.L195R 0.20 deleterious(0) probably_damaging(0.998) TCGA-A6-6782-01 9 95888716 95888716 C T NINJ1 Missense_Mutation p.V94M 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-A6-6782-01 X 119760637 119760637 C T C1GALT1C1 Missense_Mutation p.A129T 0.17 tolerated(0.15) benign(0.082) TCGA-A6-6782-01 X 135574443 135574443 C T BRS3 Missense_Mutation p.T370M 0.33 tolerated(0.25) benign(0.001) TCGA-A6-6782-01 X 19051757 19051757 G A GPR64 Missense_Mutation p.T93I 0.32 deleterious_low_confidence(0.05) benign(0.081) TCGA-A6-6782-01 X 23019696 23019696 C A DDX53 Silent p.R508R 0.15 TCGA-A6-6782-01 X 38535048 38535048 C T TSPAN7 Silent p.N177N 0.11 TCGA-A6-6782-01 X 72434107 72434107 T A NAP1L2 Missense_Mutation p.K74N 0.09 tolerated(0.35) benign(0) TCGA-A6-6782-01 X 77913793 77913793 T A ZCCHC5 Missense_Mutation p.K42M 0.32 tolerated_low_confidence(0.24) benign(0.044) TCGA-A6-6782-01 X 96171543 96171543 C A DIAPH2 Missense_Mutation p.S280Y 0.43 deleterious(0) unknown(0) TCGA-A6-A565-01 10 101997893 101997893 C A CWF19L1 Missense_Mutation p.E380D 0.07 tolerated(0.31) benign(0.06) TCGA-A6-A565-01 10 103603286 103603286 G A KCNIP2 Nonsense_Mutation p.R14* 0.11 TCGA-A6-A565-01 10 103908981 103908981 G A PPRC1 Missense_Mutation p.A1596T 0.06 tolerated(0.06) possibly_damaging(0.787) TCGA-A6-A565-01 10 104230505 104230505 C T TMEM180 Missense_Mutation p.S112L 0.07 deleterious(0) possibly_damaging(0.71) TCGA-A6-A565-01 10 105816842 105816842 C T COL17A1 Silent p.A452A 0.09 TCGA-A6-A565-01 10 11330411 11330411 C T CELF2 Missense_Mutation p.A291V 0.16 tolerated(0.17) probably_damaging(0.97) TCGA-A6-A565-01 10 114204960 114204960 C T ZDHHC6 Missense_Mutation p.G79S 0.09 deleterious(0) probably_damaging(0.995) TCGA-A6-A565-01 10 120810041 120810041 A G EIF3A Missense_Mutation p.M822T 0.06 tolerated(0.22) unknown(0) TCGA-A6-A565-01 10 125780812 125780812 C T CHST15 Missense_Mutation p.R436H 0.08 deleterious(0) possibly_damaging(0.61) TCGA-A6-A565-01 10 14816494 14816494 C T FAM107B Missense_Mutation p.V57M 0.10 tolerated_low_confidence(0.57) benign(0.001) TCGA-A6-A565-01 10 49986732 49986732 C T WDFY4 Silent p.A1084A 0.07 TCGA-A6-A565-01 10 5496922 5496922 A G NET1 Missense_Mutation p.I346M 0.07 deleterious(0.01) possibly_damaging(0.762) TCGA-A6-A565-01 10 5853844 5853844 A - GDI2 Intron 0.08 TCGA-A6-A565-01 10 70405977 70405977 C T TET1 Missense_Mutation p.T1164I 0.07 tolerated(0.5) benign(0.002) TCGA-A6-A565-01 10 71243599 71243599 G A TSPAN15 Silent p.A83A 0.09 TCGA-A6-A565-01 10 72614509 72614509 C A SGPL1 Missense_Mutation p.N102K 0.06 tolerated(0.6) benign(0.002) TCGA-A6-A565-01 10 73050750 73050750 C T UNC5B Missense_Mutation p.A393V 0.09 tolerated(1) benign(0.003) TCGA-A6-A565-01 10 73567462 73567462 G A CDH23 Missense_Mutation p.R593H 0.11 tolerated(0.22) benign(0.005) TCGA-A6-A565-01 10 7409727 7409727 C T SFMBT2 Missense_Mutation p.R107H 0.07 tolerated(0.06) probably_damaging(0.928) TCGA-A6-A565-01 10 7841134 7841134 C T ATP5C1 Silent p.D135D 0.09 TCGA-A6-A565-01 10 79397041 79397041 G A KCNMA1 Silent p.H120H 0.11 TCGA-A6-A565-01 10 94821200 94821200 C T CYP26C1 Silent p.G60G 0.06 TCGA-A6-A565-01 10 97626175 97626175 A G ENTPD1 3'UTR 0.23 TCGA-A6-A565-01 11 107502366 107502366 A G ELMOD1 Missense_Mutation p.M85V 0.07 deleterious(0.03) benign(0.051) TCGA-A6-A565-01 11 107832682 107832682 C T RAB39A Nonsense_Mutation p.R80* 0.06 TCGA-A6-A565-01 11 113075208 113075208 G A NCAM1 Missense_Mutation p.V169I 0.09 deleterious(0.05) benign(0.054) TCGA-A6-A565-01 11 117789445 117789445 C T TMPRSS13 Missense_Mutation p.A44T 0.08 tolerated_low_confidence(0.07) benign(0) TCGA-A6-A565-01 11 118981988 118981988 C T C2CD2L Missense_Mutation p.P272S 0.12 tolerated(0.55) benign(0.003) TCGA-A6-A565-01 11 125831661 125831661 C T CDON Missense_Mutation p.V1197I 0.07 tolerated(1) benign(0) TCGA-A6-A565-01 11 1272842 1272842 G A MUC5B Missense_Mutation p.S4911N 0.10 unknown(0) TCGA-A6-A565-01 11 129722492 129722492 C T TMEM45B Silent p.L39L 0.06 TCGA-A6-A565-01 11 13398233 13398233 G T ARNTL Missense_Mutation p.A457S 0.13 tolerated(1) benign(0.006) TCGA-A6-A565-01 11 46792408 46792408 T C CKAP5 Missense_Mutation p.Q1039R 0.10 deleterious(0) probably_damaging(0.99) TCGA-A6-A565-01 11 46884184 46884184 C T LRP4 Missense_Mutation p.M1786I 0.08 tolerated_low_confidence(1) benign(0) TCGA-A6-A565-01 11 47364588 47364588 C T MYBPC3 Silent p.T445T 0.11 TCGA-A6-A565-01 11 6007343 6007343 C T OR52L1 Missense_Mutation p.G273E 0.08 deleterious(0.02) probably_damaging(1) TCGA-A6-A565-01 11 60617747 60617747 C T CCDC86 Silent p.T344T 0.05 TCGA-A6-A565-01 11 61578280 61578280 G A FADS1 Silent p.D286D 0.09 TCGA-A6-A565-01 11 61907746 61907746 G A INCENP Silent p.P444P 0.06 TCGA-A6-A565-01 11 62293535 62293535 T G AHNAK Missense_Mutation p.D2785A 0.09 benign(0.138) TCGA-A6-A565-01 11 62380866 62380866 G A ROM1 Missense_Mutation p.C38Y 0.05 tolerated(0.33) possibly_damaging(0.832) TCGA-A6-A565-01 11 63396831 63396831 G A ATL3 Missense_Mutation p.A529V 0.10 tolerated(0.16) benign(0.026) TCGA-A6-A565-01 11 66083132 66083132 G A CD248 Missense_Mutation p.T456M 0.05 tolerated_low_confidence(0.1) benign(0.022) TCGA-A6-A565-01 11 67800440 67800440 C T NDUFS8 Missense_Mutation p.R54W 0.08 tolerated_low_confidence(0.06) benign(0.009) TCGA-A6-A565-01 11 6867587 6867587 C T OR10A5 Missense_Mutation p.A225V 0.07 deleterious(0) possibly_damaging(0.582) TCGA-A6-A565-01 11 70331711 70331711 A G SHANK2 Missense_Mutation p.Y1564H 0.09 tolerated(0.07) benign(0.403) TCGA-A6-A565-01 11 71941474 71941474 C T INPPL1 Missense_Mutation p.R387W 0.07 deleterious(0) probably_damaging(0.937) TCGA-A6-A565-01 11 7960360 7960360 C A OR10A3 Missense_Mutation p.K236N 0.08 deleterious(0) benign(0.309) TCGA-A6-A565-01 11 9088353 9088353 A G SCUBE2 Silent p.C217C 0.05 TCGA-A6-A565-01 11 92088326 92088326 G A FAT3 Silent p.G1016G 0.07 TCGA-A6-A565-01 11 92590415 92590415 G A FAT3 Missense_Mutation p.E3801K 0.08 benign(0.141) TCGA-A6-A565-01 11 92715297 92715297 T C MTNR1B Missense_Mutation p.L303P 0.08 deleterious(0) probably_damaging(0.999) TCGA-A6-A565-01 11 9754157 9754157 G A SWAP70 Missense_Mutation p.R327Q 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-A6-A565-01 12 109309572 109309572 G A SVOP Missense_Mutation p.P411L 0.09 deleterious(0) probably_damaging(0.999) TCGA-A6-A565-01 12 109660392 109660392 C T ACACB Silent p.S1215S 0.08 TCGA-A6-A565-01 12 111801107 111801107 C T FAM109A Missense_Mutation p.R55H 0.07 deleterious(0) probably_damaging(0.97) TCGA-A6-A565-01 12 112516469 112516469 A G NAA25 Missense_Mutation p.V185A 0.09 tolerated(0.11) benign(0.071) TCGA-A6-A565-01 12 112926888 112926888 G T PTPN11 Missense_Mutation p.G503V 0.08 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 12 120659515 120659515 C T PXN Missense_Mutation p.V248I 0.10 tolerated(0.35) benign(0.003) TCGA-A6-A565-01 12 122079142 122079142 C T ORAI1 Missense_Mutation p.R169C 0.09 deleterious(0) probably_damaging(0.999) TCGA-A6-A565-01 12 12496170 12496170 G A MANSC1 Nonsense_Mutation p.Q27* 0.08 TCGA-A6-A565-01 12 125509614 125509614 G A BRI3BP Missense_Mutation p.V132I 0.11 tolerated(0.25) benign(0.293) TCGA-A6-A565-01 12 125613888 125613888 G A AACS Silent p.A477A 0.08 TCGA-A6-A565-01 12 128900017 128900017 C T TMEM132C Missense_Mutation p.R276W 0.07 deleterious(0.01) possibly_damaging(0.764) TCGA-A6-A565-01 12 130184470 130184470 G A TMEM132D Missense_Mutation p.R285C 0.06 deleterious(0) probably_damaging(0.924) TCGA-A6-A565-01 12 1702235 1702235 C T FBXL14 Missense_Mutation p.R333H 0.12 tolerated(0.06) benign(0.004) TCGA-A6-A565-01 12 18650568 18650568 C T PIK3C2G Missense_Mutation p.R927C 0.12 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 12 21711220 21711220 G A GYS2 Missense_Mutation p.H446Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-A6-A565-01 12 26639099 26639099 T C ITPR2 Missense_Mutation p.I1917V 0.06 tolerated(0.29) benign(0.074) TCGA-A6-A565-01 12 30787141 30787141 C A IPO8 Missense_Mutation p.E925D 0.05 tolerated(0.79) benign(0.002) TCGA-A6-A565-01 12 49169166 49169166 C T ADCY6 Missense_Mutation p.A634T 0.09 deleterious(0) probably_damaging(0.993) TCGA-A6-A565-01 12 49418724 49418724 A G KMT2D Missense_Mutation p.W5264R 0.05 unknown(0) TCGA-A6-A565-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.09 TCGA-A6-A565-01 12 50514168 50514168 A T COX14 3'UTR 0.10 TCGA-A6-A565-01 12 50748354 50748354 T - FAM186A Frame_Shift_Del p.K754Rfs*2 0.10 TCGA-A6-A565-01 12 52642471 52642471 G A KRT7 Missense_Mutation p.S446N 0.12 tolerated_low_confidence(0.16) benign(0.118) TCGA-A6-A565-01 12 53553951 53553951 G A CSAD Silent p.G400G 0.08 TCGA-A6-A565-01 12 53591352 53591352 C T ITGB7 Missense_Mutation p.D167N 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-A6-A565-01 12 547713 547713 A G CCDC77 Missense_Mutation p.Y345C 0.06 tolerated(0.17) probably_damaging(0.992) TCGA-A6-A565-01 12 55759720 55759720 A G OR6C75 Missense_Mutation p.N276D 0.05 deleterious_low_confidence(0) benign(0.378) TCGA-A6-A565-01 12 57588352 57588352 C - LRP1 Intron 0.12 TCGA-A6-A565-01 12 68720629 68720629 A G MDM1 Silent p.V102V 0.08 TCGA-A6-A565-01 12 6884559 6884559 C A LAG3 Missense_Mutation p.P301H 0.07 deleterious(0.01) probably_damaging(1) TCGA-A6-A565-01 12 78513539 78513539 G A NAV3 Missense_Mutation p.R1188H 0.07 tolerated(0.07) probably_damaging(0.969) TCGA-A6-A565-01 12 94972198 94972198 T G TMCC3 Missense_Mutation p.Q368P 0.06 deleterious(0) probably_damaging(0.997) TCGA-A6-A565-01 13 103343178 103343178 C T METTL21C Silent p.A89A 0.08 TCGA-A6-A565-01 13 113200132 113200132 T - TUBGCP3 Frame_Shift_Del p.T406Qfs*22 0.09 TCGA-A6-A565-01 13 28008282 28008282 T C GTF3A Missense_Mutation p.V190A 0.10 tolerated(0.97) benign(0.001) TCGA-A6-A565-01 13 41657011 41657011 A - WBP4 Frame_Shift_Del p.K365Nfs*5 0.09 TCGA-A6-A565-01 14 100759211 100759211 G A SLC25A29 Silent p.C107C 0.11 TCGA-A6-A565-01 14 102816295 102816295 G A CINP Nonsense_Mutation p.R148* 0.07 TCGA-A6-A565-01 14 105518051 105518051 G A GPR132 Silent p.F141F 0.06 TCGA-A6-A565-01 14 20898436 20898438 CTC - KLHL33 In_Frame_Del p.E133del 0.09 TCGA-A6-A565-01 14 22038170 22038170 G A OR10G3 Missense_Mutation p.R236C 0.12 tolerated(0.09) benign(0.013) TCGA-A6-A565-01 14 23311683 23311683 C T MMP14 Missense_Mutation p.R149C 0.09 deleterious(0.03) possibly_damaging(0.881) TCGA-A6-A565-01 14 23745903 23745903 C T HOMEZ Silent p.T178T 0.07 TCGA-A6-A565-01 14 51237180 51237180 C T NIN Missense_Mutation p.E454K 0.07 deleterious(0.04) possibly_damaging(0.64) TCGA-A6-A565-01 14 62463037 62463037 C T SYT16 Silent p.D100D 0.12 TCGA-A6-A565-01 14 64625512 64625512 A C SYNE2 Missense_Mutation p.Q5321P 0.09 probably_damaging(0.943) TCGA-A6-A565-01 14 65569089 65569089 G A MAX 5'UTR 0.07 TCGA-A6-A565-01 14 86090700 86090700 T - FLRT2 3'UTR 0.09 TCGA-A6-A565-01 14 90485689 90485689 C T TDP1 Missense_Mutation p.A524V 0.10 tolerated(0.13) benign(0.2) TCGA-A6-A565-01 14 91007776 91007776 G A TTC7B Missense_Mutation p.T823I 0.11 deleterious(0) possibly_damaging(0.789) TCGA-A6-A565-01 14 91744446 91744446 G A CCDC88C Silent p.N1626N 0.06 TCGA-A6-A565-01 14 92088054 92088054 A G CATSPERB Missense_Mutation p.Y720H 0.12 tolerated(0.13) benign(0.064) TCGA-A6-A565-01 14 94088297 94088297 C A UNC79 Missense_Mutation p.A1396D 0.05 tolerated_low_confidence(0.27) benign(0.015) TCGA-A6-A565-01 14 99959210 99959210 C T CCNK Silent p.L66L 0.11 TCGA-A6-A565-01 15 101438340 101438340 C T ALDH1A3 Missense_Mutation p.T278M 0.09 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 15 34118906 34118906 G A RYR3 Missense_Mutation p.R3733H 0.09 benign(0.425) TCGA-A6-A565-01 15 45353307 45353307 A G SORD Missense_Mutation p.D103G 0.06 tolerated(0.46) possibly_damaging(0.793) TCGA-A6-A565-01 15 45403985 45403985 G T DUOX2 Missense_Mutation p.P165H 0.08 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 15 49329822 49329822 A G SECISBP2L Missense_Mutation p.C57R 0.11 deleterious(0) probably_damaging(0.928) TCGA-A6-A565-01 15 52632529 52632529 C T MYO5A Missense_Mutation p.R1368H 0.13 tolerated(0.31) possibly_damaging(0.775) TCGA-A6-A565-01 15 54529824 54529824 C T UNC13C Missense_Mutation p.A1055V 0.07 tolerated_low_confidence(0.5) benign(0.437) TCGA-A6-A565-01 15 60803726 60803726 C G RORA Missense_Mutation p.Q206H 0.09 tolerated(0.06) benign(0.013) TCGA-A6-A565-01 15 72260325 72260325 C T MYO9A Silent p.K662K 0.07 TCGA-A6-A565-01 15 75932390 75932390 C T IMP3 Silent p.Q40Q 0.10 TCGA-A6-A565-01 15 77473383 77473383 G A PEAK1 Silent p.L296L 0.09 TCGA-A6-A565-01 15 89870423 89870423 C T POLG Missense_Mutation p.A470T 0.12 deleterious(0.03) probably_damaging(0.945) TCGA-A6-A565-01 15 89872221 89872222 - G POLG Frame_Shift_Ins p.T326Hfs*62 0.10 TCGA-A6-A565-01 15 90168991 90168991 C T TICRR Missense_Mutation p.T1817M 0.07 tolerated(0.26) benign(0.043) TCGA-A6-A565-01 15 91358526 91358526 T C BLM 3'UTR 0.07 TCGA-A6-A565-01 15 99472831 99472831 G A IGF1R Missense_Mutation p.A943T 0.10 tolerated(0.35) benign(0.158) TCGA-A6-A565-01 16 1537636 1537636 G A PTX4 Silent p.G154G 0.14 TCGA-A6-A565-01 16 15714308 15714308 T - KIAA0430 Frame_Shift_Del p.K907Sfs*6 0.10 TCGA-A6-A565-01 16 22343396 22343396 C T POLR3E Missense_Mutation p.L654F 0.08 tolerated(0.11) benign(0.029) TCGA-A6-A565-01 16 23197747 23197747 G A SCNN1G Missense_Mutation p.R52H 0.12 deleterious(0) probably_damaging(0.998) TCGA-A6-A565-01 16 23716388 23716388 C T ERN2 Missense_Mutation p.D272N 0.06 tolerated(0.96) benign(0.205) TCGA-A6-A565-01 16 2569698 2569698 G A ATP6V0C Silent p.V140V 0.12 TCGA-A6-A565-01 16 27268789 27268789 G A NSMCE1 Missense_Mutation p.R35C 0.07 deleterious(0.01) possibly_damaging(0.763) TCGA-A6-A565-01 16 30735920 30735920 A G SRCAP Silent p.V1725V 0.07 TCGA-A6-A565-01 16 30777584 30777584 G A RNF40 Missense_Mutation p.R365Q 0.08 tolerated(0.31) benign(0.013) TCGA-A6-A565-01 16 31157151 31157151 G A PRSS36 Silent p.L227L 0.06 TCGA-A6-A565-01 16 3777959 3777959 C T CREBBP Silent p.P2363P 0.09 TCGA-A6-A565-01 16 4934392 4934392 G A PPL Missense_Mutation p.R1422W 0.11 deleterious(0) benign(0.021) TCGA-A6-A565-01 16 52473811 52473811 T A TOX3 Missense_Mutation p.T353S 0.07 tolerated_low_confidence(0.73) benign(0.004) TCGA-A6-A565-01 16 56904597 56904597 G A SLC12A3 Silent p.S267S 0.09 TCGA-A6-A565-01 16 57760131 57760131 G A CCDC135 Missense_Mutation p.R637H 0.06 tolerated(0.39) possibly_damaging(0.888) TCGA-A6-A565-01 16 64984902 64984902 G A CDH11 Silent p.Y554Y 0.20 TCGA-A6-A565-01 16 67768791 67768791 C T RANBP10 Missense_Mutation p.R249Q 0.10 tolerated(0.19) benign(0.003) TCGA-A6-A565-01 16 70513217 70513217 G A FUK Missense_Mutation p.A1022T 0.08 tolerated(0.07) possibly_damaging(0.708) TCGA-A6-A565-01 16 72832445 72832445 G A ZFHX3 Missense_Mutation p.T1379M 0.09 benign(0.07) TCGA-A6-A565-01 16 777464 777464 G - HAGHL 5'UTR 0.15 TCGA-A6-A565-01 16 88788034 88788034 C T PIEZO1 Missense_Mutation p.R1772H 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-A6-A565-01 16 8988917 8988917 C T USP7 Missense_Mutation p.G1004R 0.06 deleterious(0) probably_damaging(0.999) TCGA-A6-A565-01 17 10356638 10356638 T - MYH4 Frame_Shift_Del p.N981Tfs*16 0.10 TCGA-A6-A565-01 17 1630464 1630464 G A WDR81 Silent p.T737T 0.08 TCGA-A6-A565-01 17 16526147 16526147 C T ZNF624 Missense_Mutation p.V685M 0.07 tolerated(0.07) probably_damaging(0.995) TCGA-A6-A565-01 17 1792064 1792064 G A RPA1 Silent p.V490V 0.08 TCGA-A6-A565-01 17 17943182 17943183 - G GID4 Frame_Shift_Ins p.N137Efs*26 0.15 TCGA-A6-A565-01 17 2270600 2270600 G A SGSM2 Missense_Mutation p.A442T 0.09 tolerated(0.32) benign(0.009) TCGA-A6-A565-01 17 26911687 26911687 T - SPAG5 Frame_Shift_Del p.N715Tfs*4 0.10 TCGA-A6-A565-01 17 37371383 37371383 C T STAC2 Silent p.P229P 0.06 TCGA-A6-A565-01 17 37420577 37420577 C T FBXL20 Missense_Mutation p.A352T 0.08 tolerated(0.09) benign(0.285) TCGA-A6-A565-01 17 37667831 37667831 C T CDK12 Silent p.L906L 0.07 TCGA-A6-A565-01 17 39642563 39642563 C T KRT36 3'UTR 0.16 TCGA-A6-A565-01 17 40321521 40321521 C T KCNH4 Missense_Mutation p.V522I 0.08 tolerated(0.14) benign(0.001) TCGA-A6-A565-01 17 40818678 40818678 G A TUBG2 Missense_Mutation p.E406K 0.05 deleterious(0.05) benign(0.091) TCGA-A6-A565-01 17 43332645 43332645 C T SPATA32 Missense_Mutation p.E302K 0.09 tolerated(0.29) benign(0.267) TCGA-A6-A565-01 17 44791253 44791253 A - NSF Frame_Shift_Del p.I556Lfs*18 0.09 TCGA-A6-A565-01 17 4847862 4847864 ATG - RNF167 In_Frame_Del p.D228del 0.17 TCGA-A6-A565-01 17 48777159 48777159 G T ANKRD40 Missense_Mutation p.P127T 0.09 deleterious(0) probably_damaging(0.994) TCGA-A6-A565-01 17 60767066 60767066 C T MRC2 Missense_Mutation p.T1173M 0.10 deleterious(0) possibly_damaging(0.906) TCGA-A6-A565-01 17 61498344 61498344 C T TANC2 Silent p.I1667I 0.09 TCGA-A6-A565-01 17 61781209 61781209 G A STRADA Intron 0.10 TCGA-A6-A565-01 17 61950689 61950689 C T CSH2 Silent p.T7T 0.05 TCGA-A6-A565-01 17 66033478 66033478 T C KPNA2 Missense_Mutation p.M27T 0.08 tolerated(0.08) benign(0.034) TCGA-A6-A565-01 17 71189395 71189395 G A COG1 Missense_Mutation p.A63T 0.06 deleterious(0) probably_damaging(0.971) TCGA-A6-A565-01 17 71382633 71382633 G A SDK2 Silent p.G1483G 0.11 TCGA-A6-A565-01 17 71387605 71387605 G - SDK2 Frame_Shift_Del p.P1324Lfs*69 0.09 TCGA-A6-A565-01 17 72741068 72741068 G T RAB37 Missense_Mutation p.R168S 0.09 tolerated(0.07) possibly_damaging(0.61) TCGA-A6-A565-01 17 73501069 73501069 G - CASKIN2 Frame_Shift_Del p.P339Rfs*95 0.15 TCGA-A6-A565-01 17 7489056 7489056 G A MPDU1 Missense_Mutation p.C37Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-A6-A565-01 17 78317043 78317043 G A RNF213 Missense_Mutation p.R2034Q 0.11 benign(0) TCGA-A6-A565-01 17 80041188 80041188 G A FASN Missense_Mutation p.R1819W 0.07 deleterious(0.01) possibly_damaging(0.586) TCGA-A6-A565-01 17 8050889 8050889 G - PER1 Frame_Shift_Del p.L466* 0.10 TCGA-A6-A565-01 17 8169575 8169575 G A PFAS Missense_Mutation p.D909N 0.09 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 17 8221918 8221918 C T ARHGEF15 Missense_Mutation p.R604C 0.06 deleterious(0) probably_damaging(0.988) TCGA-A6-A565-01 18 2909760 2909760 G A EMILIN2 Missense_Mutation p.V923I 0.07 tolerated(0.16) possibly_damaging(0.804) TCGA-A6-A565-01 18 29340804 29340804 A G SLC25A52 5'UTR 0.08 TCGA-A6-A565-01 18 33836993 33836993 A G MOCOS Missense_Mutation p.N743D 0.05 deleterious(0) probably_damaging(0.967) TCGA-A6-A565-01 18 34310710 34310710 G A FHOD3 Silent p.T998T 0.09 TCGA-A6-A565-01 18 45374881 45374881 C T SMAD2 Missense_Mutation p.R321Q 0.05 deleterious(0.03) possibly_damaging(0.726) TCGA-A6-A565-01 18 47802005 47802005 G A MBD1 Missense_Mutation p.R253C 0.08 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 18 48575159 48575159 C T SMAD4 Missense_Mutation p.A118V 0.05 deleterious(0.04) probably_damaging(0.971) TCGA-A6-A565-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.07 deleterious(0.03) probably_damaging(1) TCGA-A6-A565-01 18 55143747 55143747 T C ONECUT2 Missense_Mutation p.L436P 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-A6-A565-01 18 72114195 72114195 G T FAM69C Silent p.G174G 0.17 TCGA-A6-A565-01 18 77097419 77097419 G A ATP9B Silent p.T751T 0.11 TCGA-A6-A565-01 18 9954066 9954066 T C VAPA Missense_Mutation p.L248P 0.10 deleterious(0.02) probably_damaging(0.926) TCGA-A6-A565-01 19 10250817 10250817 G A DNMT1 Silent p.C1237C 0.07 TCGA-A6-A565-01 19 10381830 10381830 C A ICAM1 5'UTR 0.10 TCGA-A6-A565-01 19 12491574 12491574 T - CTD-3105H18.14 3'UTR 0.16 TCGA-A6-A565-01 19 15276627 15276627 C T NOTCH3 Missense_Mutation p.V1880I 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-A6-A565-01 19 15354227 15354227 C T BRD4 Missense_Mutation p.A885T 0.18 possibly_damaging(0.499) TCGA-A6-A565-01 19 19136440 19136440 C A SUGP2 Silent p.G239G 0.06 TCGA-A6-A565-01 19 19258614 19258614 C T MEF2B Missense_Mutation p.D96N 0.12 deleterious(0.01) benign(0.387) TCGA-A6-A565-01 19 19369400 19369400 C T HAPLN4 Missense_Mutation p.R250H 0.11 deleterious(0) probably_damaging(0.989) TCGA-A6-A565-01 19 19390086 19390086 C T SUGP1 Silent p.E488E 0.14 TCGA-A6-A565-01 19 19650998 19650998 G A CILP2 Intron 0.07 TCGA-A6-A565-01 19 19655831 19655831 G A CILP2 Missense_Mutation p.R826H 0.24 deleterious(0) benign(0.277) TCGA-A6-A565-01 19 21216269 21216269 T C ZNF430 Missense_Mutation p.L35S 0.10 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 19 35434632 35434632 C T ZNF30 Silent p.H255H 0.12 TCGA-A6-A565-01 19 37643228 37643228 T C ZNF585A Missense_Mutation p.N470D 0.08 tolerated(0.18) benign(0.119) TCGA-A6-A565-01 19 37677225 37677225 G A ZNF585B Missense_Mutation p.T405I 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-A6-A565-01 19 41224197 41224197 T C ITPKC Splice_Site p.X385_splice 0.18 TCGA-A6-A565-01 19 41383239 41383239 C T CYP2A7 Silent p.R339R 0.08 TCGA-A6-A565-01 19 42880327 42880327 T C MEGF8 Silent p.I2579I 0.11 TCGA-A6-A565-01 19 48945530 48945530 C T GRIN2D Missense_Mutation p.A855V 0.09 deleterious(0) probably_damaging(0.949) TCGA-A6-A565-01 19 49510393 49510393 C T RUVBL2 Silent p.G128G 0.18 TCGA-A6-A565-01 19 50831956 50831956 G A KCNC3 Silent p.Y128Y 0.15 TCGA-A6-A565-01 19 50861982 50861982 G T NAPSA Missense_Mutation p.P364H 0.06 deleterious(0) probably_damaging(0.975) TCGA-A6-A565-01 19 51165521 51165521 C A SHANK1 Missense_Mutation p.G2063W 0.08 unknown(0) TCGA-A6-A565-01 19 51850215 51850215 G A ETFB Missense_Mutation p.A270V 0.13 deleterious_low_confidence(0) benign(0.085) TCGA-A6-A565-01 19 52329150 52329150 T - FPR3 3'UTR 0.08 TCGA-A6-A565-01 19 52794217 52794217 C T ZNF766 Silent p.V391V 0.07 TCGA-A6-A565-01 19 6381831 6381831 G A GTF2F1 Missense_Mutation p.A238V 0.14 tolerated(0.27) benign(0.118) TCGA-A6-A565-01 19 7547022 7547022 C T PEX11G Missense_Mutation p.V109M 0.11 tolerated(0.05) benign(0.426) TCGA-A6-A565-01 19 7830561 7830561 C T CLEC4M Silent p.S84S 0.10 TCGA-A6-A565-01 19 8660698 8660698 T C ADAMTS10 Missense_Mutation p.D476G 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-A6-A565-01 19 9406386 9406386 C T ZNF699 Missense_Mutation p.G565E 0.07 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 1 109479853 109479853 C T CLCC1 Missense_Mutation p.G410D 0.04 deleterious(0.04) possibly_damaging(0.521) TCGA-A6-A565-01 1 113471890 113471890 G - SLC16A1 Frame_Shift_Del p.P14Qfs*10 0.10 TCGA-A6-A565-01 1 116941625 116941625 G A ATP1A1 Silent p.P789P 0.07 TCGA-A6-A565-01 1 14106568 14106568 A G PRDM2 Missense_Mutation p.K760E 0.10 probably_damaging(0.982) TCGA-A6-A565-01 1 145457964 145457964 G A POLR3GL Missense_Mutation p.P99L 0.05 tolerated(0.13) benign(0.368) TCGA-A6-A565-01 1 150940591 150940591 C T CERS2 Silent p.R126R 0.14 TCGA-A6-A565-01 1 151115025 151115025 C T SEMA6C Missense_Mutation p.A25T 0.10 tolerated(0.11) benign(0.001) TCGA-A6-A565-01 1 151252650 151252650 T C RP11-126K1.2 3'UTR 0.12 TCGA-A6-A565-01 1 152882437 152882437 T C IVL Missense_Mutation p.V55A 0.06 tolerated_low_confidence(0.33) unknown(0) TCGA-A6-A565-01 1 152884052 152884052 C T IVL 3'UTR 0.08 TCGA-A6-A565-01 1 15421407 15421407 C T KAZN Missense_Mutation p.R509C 0.12 deleterious(0) possibly_damaging(0.684) TCGA-A6-A565-01 1 154401678 154401678 C T IL6R Missense_Mutation p.A31V 0.05 tolerated(0.17) benign(0.002) TCGA-A6-A565-01 1 154744706 154744706 C T KCNN3 Missense_Mutation p.R398Q 0.13 tolerated(0.63) benign(0.009) TCGA-A6-A565-01 1 156816408 156816408 G A INSRR Silent p.Y571Y 0.12 TCGA-A6-A565-01 1 156900353 156900353 G A LRRC71 Missense_Mutation p.A425T 0.08 deleterious(0.05) benign(0) TCGA-A6-A565-01 1 157718362 157718362 C T FCRL2 Missense_Mutation p.M480I 0.10 tolerated(1) benign(0) TCGA-A6-A565-01 1 158627289 158627289 C T SPTA1 Missense_Mutation p.G928D 0.10 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 1 158641230 158641230 T - SPTA1 Frame_Shift_Del p.N501Tfs*33 0.14 TCGA-A6-A565-01 1 160283886 160283886 G A COPA Missense_Mutation p.R246W 0.16 deleterious(0) probably_damaging(0.992) TCGA-A6-A565-01 1 160535294 160535294 A G CD84 Silent p.I96I 0.10 TCGA-A6-A565-01 1 161093933 161093933 C A DEDD Missense_Mutation p.R107L 0.09 deleterious(0.04) benign(0.263) TCGA-A6-A565-01 1 167384904 167384904 G A POU2F1 Missense_Mutation p.A720T 0.09 deleterious(0) probably_damaging(0.982) TCGA-A6-A565-01 1 168054725 168054725 C T GPR161 3'UTR 0.08 TCGA-A6-A565-01 1 178822795 178822796 - C ANGPTL1 Frame_Shift_Ins p.W318Lfs*22 0.15 TCGA-A6-A565-01 1 186083153 186083153 T C HMCN1 Missense_Mutation p.L3725P 0.07 possibly_damaging(0.541) TCGA-A6-A565-01 1 203134255 203134255 C T ADORA1 Intron 0.09 TCGA-A6-A565-01 1 203456026 203456026 G A PRELP 3'UTR 0.12 TCGA-A6-A565-01 1 204214031 204214031 C T PLEKHA6 Silent p.S711S 0.05 TCGA-A6-A565-01 1 205277763 205277763 G A NUAK2 Silent p.R150R 0.08 TCGA-A6-A565-01 1 209800244 209800244 C T LAMB3 Missense_Mutation p.R522Q 0.10 tolerated(0.24) benign(0.168) TCGA-A6-A565-01 1 214815210 214815210 T G CENPF Missense_Mutation p.S1177A 0.11 benign(0.002) TCGA-A6-A565-01 1 21582558 21582558 C T ECE1 Missense_Mutation p.R301Q 0.08 tolerated(0.09) benign(0.031) TCGA-A6-A565-01 1 220440564 220440564 T C RAB3GAP2 Intron 0.10 TCGA-A6-A565-01 1 228461919 228461919 C T OBSCN Silent p.C2194C 0.11 TCGA-A6-A565-01 1 22903206 22903206 C T EPHA8 Missense_Mutation p.T219M 0.07 deleterious(0) probably_damaging(0.998) TCGA-A6-A565-01 1 24079002 24079002 C T TCEB3 Nonsense_Mutation p.R537* 0.06 TCGA-A6-A565-01 1 240969527 240969527 G - RGS7 Frame_Shift_Del p.S395Vfs*17 0.08 TCGA-A6-A565-01 1 24410953 24410953 C T MYOM3 Intron 0.11 TCGA-A6-A565-01 1 2441498 2441498 C T PANK4 Silent p.V679V 0.10 TCGA-A6-A565-01 1 244220409 244220410 - A ZBTB18 3'UTR 0.09 TCGA-A6-A565-01 1 2489255 2489255 T C TNFRSF14 Missense_Mutation p.C54R 0.08 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 1 2560840 2560840 C - MMEL1 Frame_Shift_Del p.L29Cfs*8 0.12 TCGA-A6-A565-01 1 27428276 27428276 G A SLC9A1 Silent p.Y659Y 0.11 TCGA-A6-A565-01 1 28792250 28792250 C - PHACTR4 Frame_Shift_Del p.I121* 0.13 TCGA-A6-A565-01 1 32193199 32193199 G A BAI2 Missense_Mutation p.P1527L 0.10 tolerated(0.07) benign(0.023) TCGA-A6-A565-01 1 32691824 32691824 T C EIF3I Silent p.F101F 0.05 TCGA-A6-A565-01 1 34209199 34209199 A G CSMD2 Missense_Mutation p.F579L 0.09 tolerated(0.41) benign(0.369) TCGA-A6-A565-01 1 36509108 36509108 T C AGO3 Missense_Mutation p.Y745H 0.08 deleterious(0.02) possibly_damaging(0.637) TCGA-A6-A565-01 1 38351368 38351368 G A INPP5B Nonsense_Mutation p.R421* 0.07 TCGA-A6-A565-01 1 39802954 39802954 C A MACF1 Intron 0.07 TCGA-A6-A565-01 1 39824384 39824384 T A MACF1 Missense_Mutation p.S1925T 0.07 benign(0.03) TCGA-A6-A565-01 1 41304070 41304070 G A KCNQ4 Missense_Mutation p.V655M 0.08 tolerated(0.21) benign(0.073) TCGA-A6-A565-01 1 44683991 44683991 G T DMAP1 Missense_Mutation p.Q134H 0.11 tolerated(0.13) benign(0.016) TCGA-A6-A565-01 1 46976650 46976650 G A DMBX1 Missense_Mutation p.R126H 0.09 deleterious(0) probably_damaging(0.999) TCGA-A6-A565-01 1 47264892 47264892 C A CYP4B1 Missense_Mutation p.P47T 0.12 deleterious(0.01) possibly_damaging(0.869) TCGA-A6-A565-01 1 53516280 53516280 G T SCP2 Splice_Site p.X517_splice 0.11 TCGA-A6-A565-01 1 53676578 53676578 C T CPT2 Missense_Mutation p.T411M 0.08 tolerated(0.09) possibly_damaging(0.553) TCGA-A6-A565-01 1 62675691 62675691 G A L1TD1 Silent p.E415E 0.06 TCGA-A6-A565-01 1 62676321 62676321 C T L1TD1 Silent p.I625I 0.10 TCGA-A6-A565-01 1 6314819 6314819 G A GPR153 Silent p.L49L 0.06 TCGA-A6-A565-01 1 63789276 63789276 C T FOXD3 Missense_Mutation p.P183S 0.07 deleterious(0) probably_damaging(0.996) TCGA-A6-A565-01 1 8384499 8384499 G A SLC45A1 Missense_Mutation p.R37Q 0.14 tolerated_low_confidence(0.14) benign(0.009) TCGA-A6-A565-01 1 85096343 85096343 T C C1orf180 Missense_Mutation p.E109G 0.06 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-A6-A565-01 1 86488534 86488534 A G COL24A1 Silent p.P710P 0.05 TCGA-A6-A565-01 1 86916245 86916245 G A CLCA2 Splice_Site p.X662_splice 0.10 TCGA-A6-A565-01 1 92979231 92979231 C T EVI5 Silent p.S805S 0.09 TCGA-A6-A565-01 20 16486683 16486683 G A KIF16B Silent p.N284N 0.11 TCGA-A6-A565-01 20 19981266 19981266 C T RIN2 Nonsense_Mutation p.R841* 0.14 TCGA-A6-A565-01 20 25261619 25261619 G A PYGB Missense_Mutation p.R425H 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-A6-A565-01 20 2818910 2818910 C - PCED1A Frame_Shift_Del p.G270Afs*21 0.10 TCGA-A6-A565-01 20 31196173 31196173 G A RP11-410N8.4 Missense_Mutation p.R31Q 0.08 benign(0) TCGA-A6-A565-01 20 31973502 31973502 C T CDK5RAP1 Missense_Mutation p.R277Q 0.11 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 20 32247379 32247379 C T NECAB3 Missense_Mutation p.G268D 0.20 tolerated(0.36) benign(0.036) TCGA-A6-A565-01 20 35399489 35399489 C T DSN1 Missense_Mutation p.V48I 0.06 tolerated_low_confidence(0.51) benign(0.004) TCGA-A6-A565-01 20 44441514 44441514 C - UBE2C Intron 0.15 TCGA-A6-A565-01 20 56185344 56185344 G A ZBP1 Silent p.A318A 0.12 TCGA-A6-A565-01 20 60740566 60740566 G - SS18L1 Frame_Shift_Del 0.11 TCGA-A6-A565-01 21 34715655 34715655 G A IFNAR1 Missense_Mutation p.S153N 0.07 tolerated(0.24) benign(0.034) TCGA-A6-A565-01 21 42843880 42843880 C T TMPRSS2 Missense_Mutation p.A347T 0.09 deleterious(0.01) possibly_damaging(0.885) TCGA-A6-A565-01 21 45970395 45970395 C T KRTAP10-2 3'UTR 0.07 TCGA-A6-A565-01 21 46713394 46713394 C T LINC00205 RNA 0.08 TCGA-A6-A565-01 21 46952017 46952017 C T SLC19A1 Missense_Mutation p.V79M 0.09 tolerated(0.08) possibly_damaging(0.879) TCGA-A6-A565-01 22 17473039 17473039 G A GAB4 Missense_Mutation p.R68W 0.09 deleterious(0.05) benign(0.005) TCGA-A6-A565-01 22 17619625 17619625 A G CECR5 Silent p.F250F 0.09 TCGA-A6-A565-01 22 19394780 19394780 G A HIRA Missense_Mutation p.R77W 0.07 deleterious(0) benign(0.212) TCGA-A6-A565-01 22 22049865 22049865 C T PPIL2 Intron 0.22 TCGA-A6-A565-01 22 24468432 24468432 G A CABIN1 Silent p.Q868Q 0.10 TCGA-A6-A565-01 22 24647900 24647900 G T POM121L9P RNA 0.03 TCGA-A6-A565-01 22 29454810 29454810 G A C22orf31 Missense_Mutation p.R265W 0.06 tolerated_low_confidence(0.21) benign(0.015) TCGA-A6-A565-01 22 29611536 29611536 C A EMID1 Missense_Mutation p.P79H 0.09 deleterious(0) probably_damaging(0.967) TCGA-A6-A565-01 22 29629373 29629373 C T EMID1 Missense_Mutation p.P277S 0.09 tolerated(0.29) benign(0.074) TCGA-A6-A565-01 22 30642731 30642731 C T LIF 5'UTR 0.07 TCGA-A6-A565-01 22 31529428 31529428 G A INPP5J Missense_Mutation p.V422I 0.06 deleterious(0.03) possibly_damaging(0.45) TCGA-A6-A565-01 22 32015731 32015731 C T PISD Missense_Mutation p.R332H 0.09 tolerated(0.17) benign(0.008) TCGA-A6-A565-01 22 32111593 32111594 - T PRR14L Frame_Shift_Ins p.E745Gfs*4 0.09 TCGA-A6-A565-01 22 32754057 32754057 G A RFPL3 5'UTR 0.05 TCGA-A6-A565-01 22 41617274 41617274 G A L3MBTL2 Missense_Mutation p.V309M 0.12 deleterious(0.05) benign(0.205) TCGA-A6-A565-01 22 42608428 42608428 G T TCF20 Missense_Mutation p.R962S 0.11 probably_damaging(0.944) TCGA-A6-A565-01 22 45599053 45599053 C T KIAA0930 Missense_Mutation p.A229T 0.06 tolerated(0.57) benign(0.049) TCGA-A6-A565-01 22 45939398 45939398 C A FBLN1 Nonsense_Mutation p.S438* 0.21 TCGA-A6-A565-01 22 46656289 46656289 G T PKDREJ Silent p.S977S 0.09 TCGA-A6-A565-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.13 TCGA-A6-A565-01 22 47859097 47859097 T - LL22NC03-75H12.2 Frame_Shift_Del p.S31Afs*30 0.19 TCGA-A6-A565-01 22 50989378 50989378 T C KLHDC7B 3'UTR 0.09 TCGA-A6-A565-01 2 128388909 128388909 T G MYO7B Missense_Mutation p.L1663R 0.07 deleterious(0) possibly_damaging(0.562) TCGA-A6-A565-01 2 130877958 130877958 C T POTEF Missense_Mutation p.G44D 0.11 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-A6-A565-01 2 131486909 131486909 C T GPR148 Missense_Mutation p.A62V 0.08 tolerated(0.25) benign(0.04) TCGA-A6-A565-01 2 135075140 135075140 T C MGAT5 Silent p.P149P 0.10 TCGA-A6-A565-01 2 135696600 135696600 T A CCNT2 Missense_Mutation p.V133D 0.10 deleterious(0) probably_damaging(0.996) TCGA-A6-A565-01 2 136399204 136399204 G A R3HDM1 Missense_Mutation p.A440T 0.14 tolerated(0.61) benign(0.001) TCGA-A6-A565-01 2 152467121 152467121 C T NEB Missense_Mutation p.G3976E 0.08 possibly_damaging(0.55) TCGA-A6-A565-01 2 154335003 154335003 G A RPRM Missense_Mutation p.A26V 0.09 tolerated(0.53) benign(0) TCGA-A6-A565-01 2 166901665 166901665 T C SCN1A Missense_Mutation p.E517G 0.10 tolerated(0.17) benign(0.061) TCGA-A6-A565-01 2 171400484 171400484 C T MYO3B Missense_Mutation p.A1240V 0.16 tolerated_low_confidence(0.06) benign(0.001) TCGA-A6-A565-01 2 174231885 174231885 A T CDCA7 Missense_Mutation p.H398L 0.06 tolerated(0.65) benign(0.003) TCGA-A6-A565-01 2 179426305 179426305 C T TTN Missense_Mutation p.R28185Q 0.09 TCGA-A6-A565-01 2 179451434 179451434 G A TTN Silent p.I21398I 0.04 TCGA-A6-A565-01 2 179639019 179639019 C T TTN Silent p.T2324T 0.07 TCGA-A6-A565-01 2 183627505 183627505 T A DNAJC10 Missense_Mutation p.F748I 0.10 tolerated(0.08) possibly_damaging(0.571) TCGA-A6-A565-01 2 191067789 191067790 - A C2orf88 3'UTR 0.08 TCGA-A6-A565-01 2 198274549 198274549 G A SF3B1 Silent p.G283G 0.09 TCGA-A6-A565-01 2 198949414 198949414 T C PLCL1 Silent p.P391P 0.09 TCGA-A6-A565-01 2 201437302 201437302 T - SGOL2 Frame_Shift_Del p.L746* 0.09 TCGA-A6-A565-01 2 208693124 208693124 C T PLEKHM3 Silent p.K735K 0.08 TCGA-A6-A565-01 2 218749851 218749851 G A TNS1 Nonsense_Mutation p.R260* 0.04 TCGA-A6-A565-01 2 218762682 218762682 C T TNS1 Missense_Mutation p.V3M 0.08 tolerated(0.06) benign(0.252) TCGA-A6-A565-01 2 219001758 219001758 G C CXCR2 3'UTR 0.08 TCGA-A6-A565-01 2 219527653 219527653 C A BCS1L Missense_Mutation p.L313I 0.06 deleterious(0.02) probably_damaging(1) TCGA-A6-A565-01 2 233244524 233244524 G A ALPP Missense_Mutation p.A179T 0.05 deleterious(0) probably_damaging(0.942) TCGA-A6-A565-01 2 234198991 234198991 G T ATG16L1 Missense_Mutation p.W474C 0.07 deleterious(0) probably_damaging(0.998) TCGA-A6-A565-01 2 234526431 234526431 G A UGT1A8 Silent p.G26G 0.09 TCGA-A6-A565-01 2 234975181 234975181 T - SPP2 Frame_Shift_Del p.F151Lfs*24 0.10 TCGA-A6-A565-01 2 31412189 31412189 G A CAPN14 Silent p.H481H 0.09 TCGA-A6-A565-01 2 48809466 48809466 G A STON1-GTF2A1L Missense_Mutation p.C565Y 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-A6-A565-01 2 58459201 58459201 A G FANCL Missense_Mutation p.L48P 0.07 deleterious(0) benign(0.098) TCGA-A6-A565-01 2 69736514 69736514 G C AAK1 Missense_Mutation p.L619V 0.07 deleterious(0.01) probably_damaging(0.952) TCGA-A6-A565-01 2 70408964 70408964 G A C2orf42 Missense_Mutation p.R52C 0.09 deleterious(0) probably_damaging(0.998) TCGA-A6-A565-01 2 71708032 71708032 A C DYSF Missense_Mutation p.K37N 0.05 tolerated(0.06) probably_damaging(0.996) TCGA-A6-A565-01 2 73717129 73717129 A G ALMS1 Silent p.S2680S 0.05 TCGA-A6-A565-01 3 123038613 123038613 G A ADCY5 Missense_Mutation p.R722C 0.08 deleterious(0.02) possibly_damaging(0.864) TCGA-A6-A565-01 3 136078057 136078057 G A STAG1 Missense_Mutation p.R957C 0.12 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 3 14555903 14555903 G - GRIP2 RNA 0.10 TCGA-A6-A565-01 3 148904440 148904440 G A CP Silent p.S648S 0.08 TCGA-A6-A565-01 3 183899968 183899968 C T AP2M1 Silent p.S331S 0.05 TCGA-A6-A565-01 3 184025481 184025481 G A PSMD2 Missense_Mutation p.M761I 0.10 tolerated(0.15) benign(0.025) TCGA-A6-A565-01 3 195597006 195597006 G - TNK2 Frame_Shift_Del p.Q571Sfs*3 0.08 TCGA-A6-A565-01 3 33165921 33165921 C T CRTAP Missense_Mutation p.R215W 0.05 deleterious(0) probably_damaging(0.913) TCGA-A6-A565-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.14 deleterious(0) probably_damaging(0.939) TCGA-A6-A565-01 3 44700538 44700538 G T ZNF35 Missense_Mutation p.G228V 0.10 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 3 47047502 47047502 G A NBEAL2 Missense_Mutation p.G2290R 0.13 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 3 48461001 48461001 G - PLXNB1 Frame_Shift_Del p.L900Sfs*25 0.11 TCGA-A6-A565-01 3 51995316 51995316 C T PCBP4 5'UTR 0.07 TCGA-A6-A565-01 3 52491875 52491875 T C NISCH Missense_Mutation p.V37A 0.06 deleterious(0) possibly_damaging(0.798) TCGA-A6-A565-01 3 52562676 52562676 G A NT5DC2 Silent p.Y175Y 0.11 TCGA-A6-A565-01 3 52643517 52643517 C A PBRM1 Missense_Mutation p.Q793H 0.05 deleterious(0) benign(0.249) TCGA-A6-A565-01 3 72890244 72890244 G A SHQ1 Silent p.C146C 0.10 TCGA-A6-A565-01 3 9032286 9032286 G A SRGAP3 Silent p.S932S 0.07 TCGA-A6-A565-01 3 93758795 93758795 C T ARL13B Missense_Mutation p.T254M 0.06 tolerated(0.13) benign(0.003) TCGA-A6-A565-01 3 97516918 97516918 C T ARL6 3'UTR 0.05 TCGA-A6-A565-01 4 103553331 103553331 G A MANBA Silent p.D841D 0.08 TCGA-A6-A565-01 4 114186063 114186063 C T ANK2 Missense_Mutation p.T466M 0.10 probably_damaging(0.999) TCGA-A6-A565-01 4 119059262 119059262 C T NDST3 Silent p.G426G 0.08 TCGA-A6-A565-01 4 155411213 155411213 G A DCHS2 Missense_Mutation p.P432L 0.15 tolerated(0.3) benign(0.014) TCGA-A6-A565-01 4 170601229 170601229 C T CLCN3 Silent p.G63G 0.06 TCGA-A6-A565-01 4 175897474 175897474 G A ADAM29 Silent p.V266V 0.09 TCGA-A6-A565-01 4 178360758 178360758 T C AGA Silent p.T122T 0.08 TCGA-A6-A565-01 4 1816038 1816038 T C LETM1 3'UTR 0.18 TCGA-A6-A565-01 4 187524651 187524651 C T FAT1 Missense_Mutation p.D3677N 0.06 possibly_damaging(0.83) TCGA-A6-A565-01 4 187524961 187524961 G A FAT1 Silent p.D3573D 0.05 TCGA-A6-A565-01 4 3319124 3319124 C T RGS12 Silent p.D409D 0.12 TCGA-A6-A565-01 4 3494500 3494500 C A DOK7 Missense_Mutation p.L263M 0.05 tolerated(0.11) benign(0.045) TCGA-A6-A565-01 4 3494970 3494970 C - DOK7 Frame_Shift_Del p.S422Hfs*34 0.22 TCGA-A6-A565-01 4 78641720 78641720 C T CNOT6L Nonsense_Mutation p.W511* 0.08 TCGA-A6-A565-01 4 8229648 8229648 G A SH3TC1 Missense_Mutation p.G743S 0.08 tolerated(0.81) benign(0.004) TCGA-A6-A565-01 4 83348624 83348625 - T HNRNPDL Frame_Shift_Ins p.L290Ifs*15 0.11 TCGA-A6-A565-01 4 95444996 95444996 G A PDLIM5 Missense_Mutation p.C73Y 0.08 deleterious(0) probably_damaging(0.953) TCGA-A6-A565-01 4 9784960 9784960 G A DRD5 Missense_Mutation p.R436H 0.06 tolerated(0.16) benign(0.009) TCGA-A6-A565-01 5 126781360 126781360 C T MEGF10 Silent p.V901V 0.11 TCGA-A6-A565-01 5 13700862 13700862 C T DNAH5 Missense_Mutation p.G4537D 0.06 probably_damaging(0.982) TCGA-A6-A565-01 5 139941483 139941483 C T APBB3 Intron 0.07 TCGA-A6-A565-01 5 140209185 140209185 G A PCDHA6 Silent p.A503A 0.11 TCGA-A6-A565-01 5 140222357 140222357 C T PCDHA8 Missense_Mutation p.A484V 0.07 tolerated_low_confidence(0.05) benign(0.143) TCGA-A6-A565-01 5 140755840 140755840 T C PCDHGA6 Silent p.G730G 0.07 TCGA-A6-A565-01 5 140787989 140787989 C T PCDHGB6 Missense_Mutation p.H74Y 0.11 tolerated(1) benign(0.002) TCGA-A6-A565-01 5 149213065 149213065 C T PPARGC1B Missense_Mutation p.R477W 0.12 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 5 150925134 150925134 C T FAT2 Missense_Mutation p.A1852T 0.04 probably_damaging(0.936) TCGA-A6-A565-01 5 176918077 176918077 G A PDLIM7 Missense_Mutation p.P157S 0.09 deleterious(0.03) probably_damaging(0.99) TCGA-A6-A565-01 5 179044066 179044066 C A HNRNPH1 Missense_Mutation p.S368I 0.07 deleterious(0.04) possibly_damaging(0.761) TCGA-A6-A565-01 5 180651227 180651227 G A TRIM41 Silent p.V76V 0.04 TCGA-A6-A565-01 5 24537630 24537630 C T CDH10 Missense_Mutation p.A129T 0.08 deleterious(0) probably_damaging(0.986) TCGA-A6-A565-01 5 32390527 32390527 T C ZFR Missense_Mutation p.M666V 0.09 deleterious(0.03) unknown(0) TCGA-A6-A565-01 5 74882873 74882873 A T POLK Missense_Mutation p.S417C 0.06 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 5 79095310 79095310 C T CMYA5 Silent p.S4027S 0.10 TCGA-A6-A565-01 5 82937553 82937553 A G HAPLN1 Missense_Mutation p.V276A 0.05 tolerated(0.57) benign(0.01) TCGA-A6-A565-01 5 96139251 96139251 G T ERAP1 Missense_Mutation p.R127S 0.07 tolerated(0.5) benign(0.004) TCGA-A6-A565-01 6 111701188 111701188 T - REV3L Frame_Shift_Del p.K484Rfs*33 0.11 TCGA-A6-A565-01 6 116441249 116441249 A G COL10A1 Missense_Mutation p.V677A 0.10 tolerated(0.15) possibly_damaging(0.881) TCGA-A6-A565-01 6 116560165 116560165 T - NT5DC1 Frame_Shift_Del p.F379Lfs*74 0.10 TCGA-A6-A565-01 6 117662759 117662759 C T ROS1 Missense_Mutation p.R1569Q 0.08 tolerated(0.32) benign(0.001) TCGA-A6-A565-01 6 11778848 11778848 G T ADTRP Missense_Mutation p.L49I 0.19 tolerated(0.1) possibly_damaging(0.858) TCGA-A6-A565-01 6 121563353 121563353 T - TBC1D32 Frame_Shift_Del p.K717Nfs*29 0.09 TCGA-A6-A565-01 6 121602779 121602779 G T TBC1D32 Missense_Mutation p.Q507K 0.07 tolerated(0.07) benign(0.197) TCGA-A6-A565-01 6 128388771 128388771 G A PTPRK Missense_Mutation p.P684S 0.10 deleterious(0.04) probably_damaging(0.994) TCGA-A6-A565-01 6 136552507 136552508 TG - MTFR2 Frame_Shift_Del p.Q355Vfs*7 0.11 TCGA-A6-A565-01 6 142409776 142409776 G T NMBR Missense_Mutation p.S7Y 0.11 tolerated(0.44) benign(0.073) TCGA-A6-A565-01 6 155579003 155579003 T C TFB1M Silent p.K336K 0.09 TCGA-A6-A565-01 6 160200675 160200675 G A TCP1 Missense_Mutation p.R480C 0.06 deleterious(0.02) benign(0.017) TCGA-A6-A565-01 6 18427879 18427879 T C RNF144B Missense_Mutation p.M78T 0.11 tolerated(0.17) benign(0.001) TCGA-A6-A565-01 6 2785379 2785379 G A WRNIP1 Missense_Mutation p.A621T 0.23 deleterious(0) benign(0.28) TCGA-A6-A565-01 6 30672847 30672847 A G MDC1 Silent p.P1371P 0.14 TCGA-A6-A565-01 6 31736850 31736850 T C VWA7 Missense_Mutation p.K483R 0.17 deleterious(0.05) benign(0.234) TCGA-A6-A565-01 6 32037913 32037913 C T TNXB Missense_Mutation p.G1757S 0.16 probably_damaging(0.999) TCGA-A6-A565-01 6 34949611 34949611 C T ANKS1A Nonsense_Mutation p.R194* 0.22 TCGA-A6-A565-01 6 36929704 36929704 G A PI16 Silent p.P182P 0.17 TCGA-A6-A565-01 6 42906427 42906430 AAGG - CNPY3 Frame_Shift_Del p.K247Sfs*40 0.11 TCGA-A6-A565-01 6 56989645 56989645 T C ZNF451 Silent p.N100N 0.10 TCGA-A6-A565-01 6 65523297 65523297 A G EYS Silent p.D1139D 0.08 TCGA-A6-A565-01 6 70034863 70034863 G T BAI3 Nonsense_Mutation p.G972* 0.06 TCGA-A6-A565-01 6 73951852 73951852 G A KHDC1 Missense_Mutation p.P147L 0.11 deleterious(0) probably_damaging(0.998) TCGA-A6-A565-01 6 74124378 74124378 G A DDX43 Missense_Mutation p.V572I 0.10 tolerated(0.09) possibly_damaging(0.448) TCGA-A6-A565-01 6 74310087 74310088 - T SLC17A5 Frame_Shift_Ins p.S446Kfs*5 0.08 TCGA-A6-A565-01 6 80715546 80715547 - T TTK Intron 0.13 TCGA-A6-A565-01 6 86223788 86223788 C T SNX14 Missense_Mutation p.D853N 0.07 deleterious(0.01) probably_damaging(1) TCGA-A6-A565-01 6 90461165 90461165 C T MDN1 Missense_Mutation p.R1071Q 0.07 probably_damaging(0.998) TCGA-A6-A565-01 7 100189421 100189421 G A FBXO24 Missense_Mutation p.V190M 0.06 tolerated_low_confidence(0.1) benign(0.074) TCGA-A6-A565-01 7 100469276 100469276 G A TRIP6 Missense_Mutation p.G371S 0.08 tolerated(1) benign(0.219) TCGA-A6-A565-01 7 100841495 100841495 G A MOGAT3 Silent p.F215F 0.19 TCGA-A6-A565-01 7 107207531 107207531 A G DUS4L Missense_Mutation p.M6V 0.11 tolerated_low_confidence(0.38) benign(0) TCGA-A6-A565-01 7 112424215 112424216 - T TMEM168 Frame_Shift_Ins p.N222Kfs*15 0.09 TCGA-A6-A565-01 7 11446058 11446059 - A THSD7A Frame_Shift_Ins p.C1369Lfs*5 0.09 TCGA-A6-A565-01 7 117864956 117864956 G T ANKRD7 Missense_Mutation p.K24N 0.05 deleterious(0.02) benign(0.075) TCGA-A6-A565-01 7 120608070 120608070 T C ING3 Silent p.I213I 0.07 TCGA-A6-A565-01 7 121653839 121653839 G T PTPRZ1 Missense_Mutation p.G1580V 0.11 deleterious(0.02) benign(0.079) TCGA-A6-A565-01 7 129806195 129806195 T C TMEM209 3'UTR 0.17 TCGA-A6-A565-01 7 133622729 133622729 A G EXOC4 Missense_Mutation p.S705G 0.07 tolerated(0.47) benign(0.048) TCGA-A6-A565-01 7 134881018 134881018 C A WDR91 Silent p.V374V 0.06 TCGA-A6-A565-01 7 138774379 138774379 A - ZC3HAV1 Frame_Shift_Del p.F145Lfs*49 0.12 TCGA-A6-A565-01 7 143087020 143087020 C T ZYX Nonsense_Mutation p.R522* 0.09 TCGA-A6-A565-01 7 143270090 143270090 A G CTAGE15 Missense_Mutation p.N394D 0.07 deleterious(0.02) probably_damaging(0.979) TCGA-A6-A565-01 7 149129127 149129127 G A ZNF777 Missense_Mutation p.R746C 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-A6-A565-01 7 150554395 150554395 G A AOC1 Silent p.P279P 0.15 TCGA-A6-A565-01 7 150768601 150768601 C T SLC4A2 Silent p.F700F 0.10 TCGA-A6-A565-01 7 150840648 150840648 A G AGAP3 Missense_Mutation p.M832V 0.22 tolerated(0.17) benign(0.096) TCGA-A6-A565-01 7 157959931 157959931 G A PTPRN2 Missense_Mutation p.A201V 0.20 tolerated(0.17) benign(0.002) TCGA-A6-A565-01 7 16131307 16131307 T - ISPD 3'UTR 0.20 TCGA-A6-A565-01 7 2802288 2802288 C T GNA12 Intron 0.14 TCGA-A6-A565-01 7 31378635 31378635 T - NEUROD6 Frame_Shift_Del p.K83Rfs*35 0.17 TCGA-A6-A565-01 7 4794203 4794203 C T FOXK1 Missense_Mutation p.A287V 0.11 tolerated(0.53) benign(0.018) TCGA-A6-A565-01 7 4823862 4823862 C T AP5Z1 Missense_Mutation p.A217V 0.21 tolerated(0.08) benign(0.052) TCGA-A6-A565-01 7 4841484 4841484 G - RADIL Frame_Shift_Del p.P881Lfs*110 0.20 TCGA-A6-A565-01 7 50132685 50132685 G T ZPBP Missense_Mutation p.L36M 0.07 deleterious(0.03) possibly_damaging(0.467) TCGA-A6-A565-01 7 6196526 6196526 C T USP42 Silent p.V1261V 0.07 TCGA-A6-A565-01 7 66418350 66418350 C T TMEM248 Silent p.P306P 0.16 TCGA-A6-A565-01 7 73768245 73768245 G - CLIP2 Frame_Shift_Del p.E240Rfs*46 0.09 TCGA-A6-A565-01 7 79764581 79764581 G A GNAI1 Silent p.K35K 0.07 TCGA-A6-A565-01 7 92027984 92027984 A G ANKIB1 Silent p.A997A 0.06 TCGA-A6-A565-01 7 95034735 95034735 C T PON2 Silent p.G324G 0.05 TCGA-A6-A565-01 7 98249026 98249026 G - NPTX2 Frame_Shift_Del p.E168Sfs*35 0.14 TCGA-A6-A565-01 7 99079811 99079811 A G ZNF789 Intron 0.09 TCGA-A6-A565-01 7 99526941 99526941 C T GJC3 Nonsense_Mutation p.W101* 0.12 TCGA-A6-A565-01 7 99621075 99621075 G T ZKSCAN1 5'UTR 0.18 TCGA-A6-A565-01 8 113988113 113988113 G A CSMD3 Missense_Mutation p.A432V 0.05 tolerated(0.14) benign(0.002) TCGA-A6-A565-01 8 143762844 143762844 C T PSCA Missense_Mutation p.A42V 0.08 deleterious(0.02) benign(0.327) TCGA-A6-A565-01 8 22054216 22054216 A G BMP1 Missense_Mutation p.K597E 0.10 tolerated(0.23) benign(0.177) TCGA-A6-A565-01 8 24775896 24775897 - T NEFM Frame_Shift_Ins p.K843Nfs*4 0.09 TCGA-A6-A565-01 8 26366032 26366032 A G PNMA2 Silent p.S80S 0.07 TCGA-A6-A565-01 8 27098712 27098712 G T STMN4 Silent p.T86T 0.05 TCGA-A6-A565-01 8 27145219 27145219 C T TRIM35 Missense_Mutation p.A444T 0.08 tolerated(0.1) possibly_damaging(0.588) TCGA-A6-A565-01 8 59572167 59572167 C T NSMAF 5'Flank 0.10 TCGA-A6-A565-01 9 101243226 101243226 T C GABBR2 Silent p.K262K 0.08 TCGA-A6-A565-01 9 103111627 103111627 G A TEX10 Missense_Mutation p.R7C 0.13 deleterious(0) possibly_damaging(0.841) TCGA-A6-A565-01 9 106864389 106864389 A C SMC2 Missense_Mutation p.K262T 0.06 tolerated(0.17) benign(0.016) TCGA-A6-A565-01 9 117668172 117668172 G A TNFSF8 Silent p.C82C 0.05 TCGA-A6-A565-01 9 119461463 119461463 G A TRIM32 Missense_Mutation p.G481D 0.16 deleterious(0) probably_damaging(1) TCGA-A6-A565-01 9 121929891 121929891 C T BRINP1 Missense_Mutation p.R586H 0.04 deleterious(0.01) benign(0.295) TCGA-A6-A565-01 9 121976277 121976277 G A BRINP1 Missense_Mutation p.T281M 0.12 tolerated(0.26) benign(0.093) TCGA-A6-A565-01 9 125639817 125639817 G A RC3H2 Nonsense_Mutation p.R420* 0.15 TCGA-A6-A565-01 9 132375865 132375865 C T C9orf50 Missense_Mutation p.V298I 0.14 tolerated(1) benign(0) TCGA-A6-A565-01 9 133339541 133339541 C - ASS1 Frame_Shift_Del p.Q138Rfs*2 0.17 TCGA-A6-A565-01 9 134404913 134404913 C T UCK1 Silent p.T114T 0.12 TCGA-A6-A565-01 9 135977341 135977341 T C RALGDS Missense_Mutation p.D732G 0.09 deleterious(0) unknown(0) TCGA-A6-A565-01 9 138661896 138661896 C T KCNT1 Silent p.R538R 0.13 TCGA-A6-A565-01 9 139616663 139616663 G A FAM69B Silent p.A131A 0.06 TCGA-A6-A565-01 9 139641998 139641998 G A LCN6 Silent p.Y36Y 0.17 TCGA-A6-A565-01 9 139814815 139814815 C T TRAF2 Nonsense_Mutation p.Q270* 0.05 TCGA-A6-A565-01 9 140176641 140176641 C T TOR4A 3'UTR 0.10 TCGA-A6-A565-01 9 21333271 21333271 C T KLHL9 Missense_Mutation p.A530T 0.06 deleterious(0) benign(0.228) TCGA-A6-A565-01 9 214455 214455 T A C9orf66 3'UTR 0.19 TCGA-A6-A565-01 9 32493801 32493801 C A DDX58 Silent p.L127L 0.15 TCGA-A6-A565-01 9 35403760 35403760 G A UNC13B Silent p.E1502E 0.11 TCGA-A6-A565-01 9 73218329 73218329 G A TRPM3 Missense_Mutation p.R897C 0.12 deleterious(0.05) possibly_damaging(0.901) TCGA-A6-A565-01 9 74970924 74970924 G A ZFAND5 Missense_Mutation p.A196V 0.06 deleterious(0) possibly_damaging(0.856) TCGA-A6-A565-01 9 78853999 78853999 C T PCSK5 Silent p.S997S 0.07 TCGA-A6-A565-01 9 8317740 8317740 T G PTPRD 3'UTR 0.24 TCGA-A6-A565-01 9 90503436 90503436 A T SPATA31E1 Missense_Mutation p.H1345L 0.07 tolerated(0.07) benign(0.341) TCGA-A6-A565-01 9 95477620 95477620 C T BICD2 Missense_Mutation p.R795Q 0.13 deleterious(0.02) probably_damaging(0.988) TCGA-A6-A565-01 9 95599733 95599733 G T ANKRD19P RNA 0.15 TCGA-A6-A565-01 X 102754904 102754904 G T RAB40A Missense_Mutation p.P261T 0.06 tolerated_low_confidence(0.08) benign(0.003) TCGA-A6-A565-01 X 10535286 10535286 C T MID1 Missense_Mutation p.R101H 0.10 tolerated(0.06) benign(0.009) TCGA-A6-A565-01 X 108867996 108867996 C T KCNE1L Missense_Mutation p.R85H 0.11 deleterious(0) probably_damaging(0.997) TCGA-A6-A565-01 X 110490722 110490722 T C CAPN6 Silent p.P539P 0.08 TCGA-A6-A565-01 X 110980013 110980013 T C ALG13 Silent p.G867G 0.04 TCGA-A6-A565-01 X 118809625 118809625 C T SEPT6 Missense_Mutation p.G13S 0.07 tolerated(0.68) benign(0.176) TCGA-A6-A565-01 X 120183239 120183239 C T GLUD2 3'UTR 0.07 TCGA-A6-A565-01 X 129155009 129155009 G - BCORL1 Frame_Shift_Del p.A1166Lfs*56 0.11 TCGA-A6-A565-01 X 129629119 129629119 C T RP1-274L7.1 RNA 0.04 TCGA-A6-A565-01 X 134305221 134305221 A G CT55 5'UTR 0.15 TCGA-A6-A565-01 X 135047209 135047209 G A MMGT1 Nonsense_Mutation p.R124* 0.07 TCGA-A6-A565-01 X 136649252 136649252 C T ZIC3 Silent p.G134G 0.08 TCGA-A6-A565-01 X 141291756 141291756 G A MAGEC2 Silent p.G6G 0.06 TCGA-A6-A565-01 X 148627252 148627252 C T CXorf40A Missense_Mutation p.R26C 0.06 tolerated(0.05) probably_damaging(1) TCGA-A6-A565-01 X 152710817 152710817 C T TREX2 Silent p.E24E 0.10 TCGA-A6-A565-01 X 152771464 152771464 C T BGN Silent p.R165R 0.07 TCGA-A6-A565-01 X 152826171 152826171 G A ATP2B3 Silent p.A959A 0.06 TCGA-A6-A565-01 X 152830439 152830439 G A ATP2B3 Missense_Mutation p.G1074R 0.06 tolerated(0.2) benign(0.002) TCGA-A6-A565-01 X 153230093 153230093 C T HCFC1 Missense_Mutation p.R93H 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-A6-A565-01 X 153533552 153533552 G A TKTL1 Intron 0.09 TCGA-A6-A565-01 X 21627731 21627731 A G CNKSR2 Silent p.E896E 0.21 TCGA-A6-A565-01 X 32563393 32563394 - T DMD Frame_Shift_Ins p.T684Nfs*36 0.09 TCGA-A6-A565-01 X 36254926 36254927 - A CXorf30 5'UTR 0.09 TCGA-A6-A565-01 X 37587366 37587366 C T XK Missense_Mutation p.A329V 0.07 tolerated(0.56) benign(0.133) TCGA-A6-A565-01 X 39913142 39913142 T C BCOR Missense_Mutation p.Q1658R 0.06 deleterious(0.01) probably_damaging(0.983) TCGA-A6-A565-01 X 41043260 41043260 C T USP9X Missense_Mutation p.T1053M 0.07 deleterious(0.01) benign(0.105) TCGA-A6-A565-01 X 49646765 49646765 T - USP27X 3'UTR 0.09 TCGA-A6-A565-01 X 53245307 53245307 T C KDM5C Missense_Mutation p.K244E 0.11 tolerated(0.06) probably_damaging(0.998) TCGA-A6-A565-01 X 70149485 70149485 A G SLC7A3 Silent p.Y121Y 0.06 TCGA-A6-A565-01 X 70352786 70352786 C A MED12 Missense_Mutation p.L1503I 0.06 probably_damaging(0.911) TCGA-A6-A565-01 X 71360638 71360638 C T NHSL2 Intron 0.09 TCGA-A6-A565-01 X 73960159 73960159 A C KIAA2022 Silent p.G1411G 0.07 TCGA-A6-A565-01 X 77245134 77245134 C T ATP7A Missense_Mutation p.S339L 0.07 tolerated(0.09) benign(0.011) TCGA-A6-A565-01 X 86069720 86069720 A - DACH2 Frame_Shift_Del p.T525Pfs*33 0.09 TCGA-A6-A565-01 X 90692859 90692859 A T PABPC5 3'UTR 0.11 TCGA-A6-A566-01 10 17204200 17204200 C T TRDMT1 Silent p.T96T 0.13 TCGA-A6-A566-01 10 32307030 32307030 T C KIF5B Missense_Mutation p.I832V 0.15 deleterious(0.01) possibly_damaging(0.5) TCGA-A6-A566-01 10 63170406 63170406 C T TMEM26 Missense_Mutation p.V261I 0.22 tolerated(0.3) benign(0.01) TCGA-A6-A566-01 10 70333621 70333621 C T TET1 Missense_Mutation p.P509L 0.21 deleterious(0) possibly_damaging(0.743) TCGA-A6-A566-01 11 122968631 122968631 G A CLMP Missense_Mutation p.H20Y 0.13 deleterious(0.02) benign(0.015) TCGA-A6-A566-01 11 123810894 123810894 G T OR4D5 Missense_Mutation p.D191Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-A6-A566-01 11 1267260 1267260 C G MUC5B Silent p.T3050T 0.06 TCGA-A6-A566-01 11 1269767 1269767 C T MUC5B Missense_Mutation p.T3886M 0.12 unknown(0) TCGA-A6-A566-01 11 22747975 22747975 T G GAS2 Silent p.G135G 0.26 TCGA-A6-A566-01 11 4945334 4945334 G A OR51G1 Missense_Mutation p.T79I 0.15 deleterious(0) probably_damaging(0.984) TCGA-A6-A566-01 11 63398850 63398850 T C ATL3 Missense_Mutation p.T401A 0.15 tolerated(0.29) benign(0.02) TCGA-A6-A566-01 11 72396617 72396617 C T ARAP1 3'UTR 0.17 TCGA-A6-A566-01 11 76370796 76370796 C T LRRC32 Missense_Mutation p.R614H 0.22 deleterious(0.01) possibly_damaging(0.794) TCGA-A6-A566-01 11 7949751 7949751 A G OR10A6 Silent p.F153F 0.21 TCGA-A6-A566-01 12 109693967 109693967 C T ACACB Silent p.S2063S 0.16 TCGA-A6-A566-01 12 111064207 111064207 T C TCTN1 Missense_Mutation p.S128P 0.22 deleterious(0) probably_damaging(0.972) TCGA-A6-A566-01 12 112546546 112546546 T A NAA25 Missense_Mutation p.N11I 0.38 deleterious(0) possibly_damaging(0.635) TCGA-A6-A566-01 12 120580462 120580462 C T GCN1L1 Missense_Mutation p.R1893H 0.40 probably_damaging(0.999) TCGA-A6-A566-01 12 122674827 122674827 C T LRRC43 Silent p.I271I 0.13 TCGA-A6-A566-01 12 25378647 25378647 T A KRAS Missense_Mutation p.K117N 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-A6-A566-01 12 2717835 2717836 - G CACNA1C Frame_Shift_Ins p.E1194Gfs*8 0.14 TCGA-A6-A566-01 12 40677757 40677757 G A LRRK2 Silent p.A774A 0.12 TCGA-A6-A566-01 12 43777639 43777639 G T ADAMTS20 Missense_Mutation p.Q1532K 0.17 tolerated(0.89) benign(0.002) TCGA-A6-A566-01 12 48723329 48723329 C T H1FNT Silent p.N85N 0.26 TCGA-A6-A566-01 12 52448286 52448286 C T NR4A1 Silent p.D71D 0.41 TCGA-A6-A566-01 12 52985320 52985320 G A KRT72 Silent p.A297A 0.10 TCGA-A6-A566-01 12 54943682 54943682 C T PDE1B Missense_Mutation p.P9L 0.12 tolerated_low_confidence(0.15) benign(0.003) TCGA-A6-A566-01 12 56530652 56530652 G A ESYT1 Missense_Mutation p.R596K 0.10 deleterious(0.05) probably_damaging(0.968) TCGA-A6-A566-01 12 56812010 56812010 G C TIMELESS Missense_Mutation p.S1121C 0.23 deleterious_low_confidence(0.04) benign(0.421) TCGA-A6-A566-01 12 6691778 6691778 C T CHD4 Intron 0.12 TCGA-A6-A566-01 12 69652731 69652731 G A CPSF6 Silent p.P352P 0.20 TCGA-A6-A566-01 12 7362792 7362792 C T PEX5 Silent p.L646L 0.19 TCGA-A6-A566-01 12 75875825 75875825 G A GLIPR1 Missense_Mutation p.R129Q 0.16 tolerated(0.56) benign(0.01) TCGA-A6-A566-01 12 91347620 91347620 C T CCER1 Silent p.A300A 0.18 TCGA-A6-A566-01 13 103339349 103339349 G T METTL21C Missense_Mutation p.A114E 0.27 deleterious(0.03) probably_damaging(1) TCGA-A6-A566-01 13 43474469 43474469 T G EPSTI1 Missense_Mutation p.K275N 0.24 deleterious(0.01) possibly_damaging(0.691) TCGA-A6-A566-01 13 67802399 67802399 G C PCDH9 Silent p.T58T 0.18 TCGA-A6-A566-01 14 105517566 105517566 G A GPR132 Missense_Mutation p.A303V 0.23 tolerated(0.17) possibly_damaging(0.557) TCGA-A6-A566-01 14 20344674 20344674 C A OR4K2 Missense_Mutation p.T83K 0.11 tolerated(0.22) benign(0.066) TCGA-A6-A566-01 14 65209110 65209110 G A PLEKHG3 Missense_Mutation p.D903N 0.16 tolerated(0.61) benign(0.005) TCGA-A6-A566-01 14 92790256 92790256 G A SLC24A4 Missense_Mutation p.A28T 0.14 tolerated_low_confidence(0.09) benign(0.043) TCGA-A6-A566-01 15 26793269 26793269 C A GABRB3 Nonsense_Mutation p.G365* 0.21 TCGA-A6-A566-01 15 27216732 27216732 C T GABRG3 Missense_Mutation p.A17V 0.34 tolerated(0.48) benign(0.019) TCGA-A6-A566-01 15 34130694 34130694 C T RYR3 Silent p.N4171N 0.22 TCGA-A6-A566-01 15 48736737 48736737 C T FBN1 Splice_Site p.X2013_splice 0.21 TCGA-A6-A566-01 15 49171094 49171094 G A EID1 3'UTR 0.22 TCGA-A6-A566-01 15 65477469 65477469 G T CLPX Missense_Mutation p.T8N 0.27 tolerated_low_confidence(0.13) benign(0.099) TCGA-A6-A566-01 15 75249611 75249611 G A RPP25 5'UTR 0.25 TCGA-A6-A566-01 15 99669819 99669819 C T SYNM Silent p.A417A 0.18 TCGA-A6-A566-01 16 29856006 29856006 G A MVP Silent p.S609S 0.13 TCGA-A6-A566-01 16 30747636 30747636 G A SRCAP Missense_Mutation p.G2282E 0.19 probably_damaging(0.981) TCGA-A6-A566-01 16 31336084 31336085 AG - ITGAM Frame_Shift_Del p.R759Tfs*9 0.18 TCGA-A6-A566-01 16 3304201 3304201 C T MEFV Silent p.A289A 0.28 TCGA-A6-A566-01 16 49671797 49671797 C T ZNF423 Silent p.L422L 0.17 TCGA-A6-A566-01 16 77353810 77353810 C T ADAMTS18 Missense_Mutation p.R823H 0.19 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 16 779034 779034 C T HAGHL Missense_Mutation p.T209I 0.30 deleterious(0.02) probably_damaging(0.945) TCGA-A6-A566-01 16 81957138 81957138 G A PLCG2 Missense_Mutation p.D786N 0.14 deleterious(0.01) possibly_damaging(0.621) TCGA-A6-A566-01 17 17697375 17697375 C T RAI1 Silent p.P371P 0.33 TCGA-A6-A566-01 17 29665158 29665158 G A NF1 Splice_Site p.X2273_splice 0.14 TCGA-A6-A566-01 17 36720407 36720407 C T SRCIN1 Missense_Mutation p.R163Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-A6-A566-01 17 37627732 37627732 C T CDK12 Silent p.P549P 0.18 TCGA-A6-A566-01 17 39593671 39593671 C A KRT38 Missense_Mutation p.R455L 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-A6-A566-01 17 42552194 42552195 - A GPATCH8 Intron 0.19 TCGA-A6-A566-01 17 44952691 44952691 C T WNT9B Missense_Mutation p.R187W 0.23 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 17 685893 685893 T C RNMTL1 Missense_Mutation p.L92P 0.12 deleterious(0.02) possibly_damaging(0.639) TCGA-A6-A566-01 17 70119705 70119706 CC - SOX9 Frame_Shift_Del p.P237Tfs*14 0.27 TCGA-A6-A566-01 17 78796980 78796980 G A RPTOR Missense_Mutation p.V365I 0.18 tolerated(0.12) possibly_damaging(0.487) TCGA-A6-A566-01 17 79632327 79632327 C T OXLD1 Silent p.E116E 0.23 TCGA-A6-A566-01 17 8139247 8139247 C T CTC1 Missense_Mutation p.A370T 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-A566-01 18 14837279 14837279 G T ANKRD30B Missense_Mutation p.D854Y 0.19 tolerated_low_confidence(0.05) probably_damaging(0.934) TCGA-A6-A566-01 18 25570134 25570134 C T CDH2 Missense_Mutation p.G509R 0.22 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 18 34182649 34182649 G A FHOD3 Nonsense_Mutation p.W244* 0.18 TCGA-A6-A566-01 18 61264576 61264576 C T SERPINB13 Silent p.F385F 0.23 TCGA-A6-A566-01 18 67614251 67614251 G T CD226 Missense_Mutation p.S34Y 0.15 deleterious(0) possibly_damaging(0.824) TCGA-A6-A566-01 19 10795503 10795503 G A ILF3 Intron 0.16 TCGA-A6-A566-01 19 11259829 11259829 C T SPC24 Silent p.Q82Q 0.17 TCGA-A6-A566-01 19 1460817 1460817 C T APC2 Silent p.I494I 0.20 TCGA-A6-A566-01 19 14951903 14951903 C A OR7A10 Missense_Mutation p.A263S 0.21 tolerated_low_confidence(0.1) benign(0.113) TCGA-A6-A566-01 19 1555378 1555378 C T MEX3D 3'UTR 0.18 TCGA-A6-A566-01 19 19824910 19824910 T C ZNF14 Missense_Mutation p.K61E 0.23 deleterious(0.04) benign(0.01) TCGA-A6-A566-01 19 22155062 22155062 G C ZNF208 Missense_Mutation p.A925G 0.24 deleterious(0.05) unknown(0) TCGA-A6-A566-01 19 30934627 30934627 G A ZNF536 Missense_Mutation p.R53Q 0.14 tolerated_low_confidence(0.56) possibly_damaging(0.544) TCGA-A6-A566-01 19 41119777 41119777 G A LTBP4 Intron 0.30 TCGA-A6-A566-01 19 42583285 42583285 G A ZNF574 Missense_Mutation p.R176Q 0.15 tolerated(0.59) benign(0) TCGA-A6-A566-01 19 8152807 8152807 G A FBN3 Missense_Mutation p.P2174L 0.20 deleterious(0.04) possibly_damaging(0.458) TCGA-A6-A566-01 19 9868418 9868418 A C ZNF846 Silent p.T445T 0.32 TCGA-A6-A566-01 1 109840181 109840181 C T MYBPHL Missense_Mutation p.R98H 0.22 tolerated(0.17) benign(0.044) TCGA-A6-A566-01 1 145556605 145556605 C A ANKRD35 Missense_Mutation p.H59N 0.23 deleterious(0) benign(0.322) TCGA-A6-A566-01 1 150131162 150131162 C A PLEKHO1 Missense_Mutation p.A225E 0.23 deleterious(0.01) possibly_damaging(0.669) TCGA-A6-A566-01 1 152188269 152188269 A G HRNR Missense_Mutation p.S1946P 0.05 unknown(0) TCGA-A6-A566-01 1 154544178 154544178 C T CHRNB2 Silent p.D293D 0.11 TCGA-A6-A566-01 1 156503564 156503564 C T IQGAP3 Splice_Site p.X1326_splice 0.23 TCGA-A6-A566-01 1 16953664 16953664 G A CROCCP2 3'Flank 0.07 TCGA-A6-A566-01 1 176661308 176661308 G T PAPPA2 Missense_Mutation p.M826I 0.16 deleterious(0) probably_damaging(0.998) TCGA-A6-A566-01 1 176709245 176709245 T C PAPPA2 Missense_Mutation p.V1355A 0.18 deleterious(0) probably_damaging(0.996) TCGA-A6-A566-01 1 186303546 186303546 C T TPR Missense_Mutation p.R1698H 0.15 possibly_damaging(0.522) TCGA-A6-A566-01 1 19181156 19181156 G A TAS1R2 Missense_Mutation p.R270C 0.12 deleterious(0) probably_damaging(0.982) TCGA-A6-A566-01 1 205779402 205779402 G A SLC41A1 Silent p.N56N 0.27 TCGA-A6-A566-01 1 205801816 205801816 C T PM20D1 Missense_Mutation p.V399I 0.20 tolerated(1) benign(0.006) TCGA-A6-A566-01 1 227919914 227919914 C T JMJD4 3'UTR 0.29 TCGA-A6-A566-01 1 235963671 235963671 G T LYST Missense_Mutation p.L1319I 0.18 tolerated(0.49) possibly_damaging(0.514) TCGA-A6-A566-01 1 247875693 247875693 C T OR6F1 Missense_Mutation p.R122H 0.14 deleterious(0.03) probably_damaging(0.915) TCGA-A6-A566-01 1 8384399 8384399 G A SLC45A1 Missense_Mutation p.A4T 0.17 tolerated_low_confidence(0.19) benign(0) TCGA-A6-A566-01 1 9017324 9017324 G T CA6 Missense_Mutation p.G130W 0.22 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 20 55908800 55908800 C A SPO11 Missense_Mutation p.A131E 0.13 deleterious(0) benign(0.388) TCGA-A6-A566-01 20 61982034 61982034 C T CHRNA4 Silent p.P243P 0.22 TCGA-A6-A566-01 20 947910 947910 G T RSPO4 Silent p.R106R 0.14 TCGA-A6-A566-01 21 33065756 33065756 C T SCAF4 Missense_Mutation p.R455Q 0.20 benign(0.238) TCGA-A6-A566-01 22 19371186 19371186 G A HIRA Missense_Mutation p.R458W 0.21 deleterious(0) probably_damaging(0.984) TCGA-A6-A566-01 22 24225043 24225043 C T SLC2A11 Missense_Mutation p.T331M 0.21 tolerated(0.11) benign(0.183) TCGA-A6-A566-01 22 29445469 29445469 G A ZNRF3 Missense_Mutation p.G434S 0.35 tolerated(0.21) benign(0.06) TCGA-A6-A566-01 22 31845456 31845456 C T EIF4ENIF1 Missense_Mutation p.G549E 0.15 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 22 39885575 39885575 A T MGAT3 3'UTR 0.19 TCGA-A6-A566-01 22 51065300 51065300 G A ARSA Missense_Mutation p.R216C 0.14 deleterious(0.02) possibly_damaging(0.642) TCGA-A6-A566-01 2 11752734 11752734 G A GREB1 Silent p.P1040P 0.19 TCGA-A6-A566-01 2 129026351 129026351 C T HS6ST1 Silent p.S207S 0.25 TCGA-A6-A566-01 2 148674942 148674942 C T ACVR2A Nonsense_Mutation p.R255* 0.26 TCGA-A6-A566-01 2 1488472 1488472 G A TPO Silent p.V481V 0.24 TCGA-A6-A566-01 2 168105878 168105878 T G XIRP2 Missense_Mutation p.V2659G 0.26 benign(0.019) TCGA-A6-A566-01 2 177017447 177017447 G A HOXD4 Missense_Mutation p.R182H 0.20 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 2 179582820 179582820 G A TTN Nonsense_Mutation p.R8305* 0.23 TCGA-A6-A566-01 2 179641682 179641682 C T TTN Missense_Mutation p.G1637S 0.13 TCGA-A6-A566-01 2 190618719 190618719 G - OSGEPL1 Frame_Shift_Del p.H296Ifs*3 0.24 TCGA-A6-A566-01 2 192700730 192700730 G A SDPR Silent p.Y399Y 0.15 TCGA-A6-A566-01 2 196642646 196642646 C T DNAH7 Missense_Mutation p.D3648N 0.15 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 2 210703946 210703946 C T UNC80 Silent p.H1014H 0.23 TCGA-A6-A566-01 2 219892470 219892470 C T CCDC108 Missense_Mutation p.V705M 0.19 tolerated(0.06) possibly_damaging(0.742) TCGA-A6-A566-01 2 227661635 227661635 T C IRS1 Missense_Mutation p.H607R 0.18 tolerated(0.97) probably_damaging(0.977) TCGA-A6-A566-01 2 242738534 242738534 C T GAL3ST2 Silent p.A28A 0.14 TCGA-A6-A566-01 2 36771604 36771604 C T CRIM1 Silent p.P903P 0.16 TCGA-A6-A566-01 2 47403657 47403657 C T CALM2 5'UTR 0.18 TCGA-A6-A566-01 2 49210253 49210253 T C FSHR Missense_Mutation p.T193A 0.14 deleterious(0) possibly_damaging(0.475) TCGA-A6-A566-01 2 5835856 5835856 G A SOX11 3'UTR 0.15 TCGA-A6-A566-01 2 65593812 65593812 G T SPRED2 Intron 0.15 TCGA-A6-A566-01 2 96260023 96260023 A G TRIM43 Silent p.Q84Q 0.30 TCGA-A6-A566-01 3 108147478 108147478 T G MYH15 Missense_Mutation p.H1208P 0.08 deleterious(0) probably_damaging(0.958) TCGA-A6-A566-01 3 122331936 122331939 TCTT - PARP15 Frame_Shift_Del p.F199Hfs*7 0.16 TCGA-A6-A566-01 3 126193980 126193980 G A ZXDC Silent p.G243G 0.21 TCGA-A6-A566-01 3 126752936 126752936 C T PLXNA1 3'UTR 0.21 TCGA-A6-A566-01 3 15642920 15642920 A C HACL1 Silent p.A17A 0.17 TCGA-A6-A566-01 3 159995263 159995263 C G IFT80 Missense_Mutation p.D644H 0.10 deleterious(0.04) probably_damaging(0.935) TCGA-A6-A566-01 3 164786971 164786971 G A SI Nonsense_Mutation p.Q90* 0.29 TCGA-A6-A566-01 3 178922324 178922324 G A PIK3CA Missense_Mutation p.E365K 0.20 deleterious(0.05) possibly_damaging(0.705) TCGA-A6-A566-01 3 195511011 195511011 A C MUC4 Silent p.P2480P 0.17 TCGA-A6-A566-01 3 30732950 30732951 - GACC TGFBR2 Frame_Shift_Ins p.H548Rfs*19 0.26 TCGA-A6-A566-01 3 45879491 45879491 C T LZTFL1 Missense_Mutation p.R19H 0.20 tolerated(0.1) benign(0.121) TCGA-A6-A566-01 3 52475619 52475619 C T SEMA3G Missense_Mutation p.R213H 0.18 deleterious(0) probably_damaging(0.986) TCGA-A6-A566-01 3 52811713 52811713 C T ITIH1 Silent p.L28L 0.22 TCGA-A6-A566-01 3 55021772 55021772 C A CACNA2D3 Silent p.S894S 0.24 TCGA-A6-A566-01 3 6903303 6903303 C T GRM7 Silent p.I76I 0.22 TCGA-A6-A566-01 3 99513273 99513273 G C COL8A1 Silent p.G176G 0.15 TCGA-A6-A566-01 4 110581473 110581473 C G CCDC109B Missense_Mutation p.L100V 0.18 tolerated(0.16) benign(0.302) TCGA-A6-A566-01 4 146095838 146095838 C T OTUD4 Missense_Mutation p.R8Q 0.20 deleterious(0.04) possibly_damaging(0.516) TCGA-A6-A566-01 4 152559872 152559872 T G FAM160A1 Nonsense_Mutation p.L397* 0.20 TCGA-A6-A566-01 4 15993947 15993947 G A PROM1 Missense_Mutation p.A612V 0.24 tolerated(0.08) possibly_damaging(0.653) TCGA-A6-A566-01 4 17660007 17660007 C T FAM184B Missense_Mutation p.R668H 0.21 tolerated(0.07) benign(0.016) TCGA-A6-A566-01 4 55964315 55964315 C T KDR Missense_Mutation p.R833Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-A6-A566-01 4 79343065 79343065 C T FRAS1 Missense_Mutation p.T1530M 0.25 probably_damaging(0.948) TCGA-A6-A566-01 4 88312214 88312214 A - HSD17B11 Frame_Shift_Del p.L4Ffs*11 0.16 TCGA-A6-A566-01 4 90857446 90857446 C T MMRN1 Missense_Mutation p.T872M 0.19 tolerated(0.23) benign(0.066) TCGA-A6-A566-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.15 TCGA-A6-A566-01 5 112175280 112175281 CT - APC Frame_Shift_Del p.P1330Qfs*11 0.20 TCGA-A6-A566-01 5 115782942 115782942 G A SEMA6A Silent p.I820I 0.23 TCGA-A6-A566-01 5 132233980 132233981 CT - AFF4 Frame_Shift_Del p.S444* 0.17 TCGA-A6-A566-01 5 14336754 14336754 G A TRIO Missense_Mutation p.R655Q 0.21 benign(0.011) TCGA-A6-A566-01 5 153181974 153181974 G T GRIA1 Missense_Mutation p.G825V 0.26 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 5 176018323 176018323 C A CDHR2 Silent p.R1218R 0.16 TCGA-A6-A566-01 5 177637601 177637601 C T HNRNPAB Nonsense_Mutation p.Q326* 0.23 TCGA-A6-A566-01 5 33549336 33549336 C T ADAMTS12 Silent p.A1426A 0.28 TCGA-A6-A566-01 5 43246086 43246086 G A NIM1K Missense_Mutation p.R70Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-A6-A566-01 5 5318390 5318390 G T ADAMTS16 Missense_Mutation p.K1185N 0.20 deleterious(0.03) possibly_damaging(0.598) TCGA-A6-A566-01 5 73144822 73144822 C T ARHGEF28 Missense_Mutation p.R553C 0.32 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 5 89949611 89949611 C A GPR98 Missense_Mutation p.A1407D 0.27 probably_damaging(0.975) TCGA-A6-A566-01 5 95746663 95746663 C T PCSK1 Missense_Mutation p.V304I 0.25 tolerated(0.09) probably_damaging(0.958) TCGA-A6-A566-01 6 170060823 170060823 G A WDR27 Silent p.S355S 0.17 TCGA-A6-A566-01 6 31125227 31125227 G T CCHCR1 Missense_Mutation p.H51N 0.13 tolerated_low_confidence(0.25) benign(0.039) TCGA-A6-A566-01 6 33382262 33382262 C T PHF1 Silent p.D295D 0.25 TCGA-A6-A566-01 6 44121529 44121529 G A TMEM63B Missense_Mutation p.A687T 0.16 deleterious(0) probably_damaging(0.979) TCGA-A6-A566-01 6 54212204 54212204 G A TINAG Missense_Mutation p.R263Q 0.23 tolerated(0.38) benign(0.017) TCGA-A6-A566-01 6 54805047 54805047 G A FAM83B Silent p.A426A 0.26 TCGA-A6-A566-01 7 103008190 103008190 C T PSMC2 Missense_Mutation p.R360C 0.14 deleterious(0) possibly_damaging(0.484) TCGA-A6-A566-01 7 121756700 121756700 C T AASS Missense_Mutation p.R294H 0.20 tolerated(0.19) benign(0.022) TCGA-A6-A566-01 7 135082924 135082924 C T CNOT4 Silent p.Q292Q 0.08 TCGA-A6-A566-01 7 23299711 23299711 G A GPNMB Silent p.R218R 0.17 TCGA-A6-A566-01 7 24703239 24703239 C A MPP6 Missense_Mutation p.P228T 0.16 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 7 27570941 27570941 G C HIBADH Missense_Mutation p.A241G 0.12 deleterious(0.01) benign(0.432) TCGA-A6-A566-01 7 55874818 55874818 G T SEPT14 Silent p.G317G 0.18 TCGA-A6-A566-01 7 71134974 71134974 C A WBSCR17 Silent p.I428I 0.13 TCGA-A6-A566-01 7 75398962 75398962 C T CCL26 3'UTR 0.19 TCGA-A6-A566-01 7 81612643 81612644 - T CACNA2D1 Frame_Shift_Ins p.K629Qfs*12 0.18 TCGA-A6-A566-01 7 88966174 88966174 C A ZNF804B Missense_Mutation p.P1293H 0.16 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 7 95606854 95606854 C A DYNC1I1 Missense_Mutation p.S191Y 0.17 tolerated(0.54) benign(0.048) TCGA-A6-A566-01 8 131812739 131812739 G T ADCY8 Missense_Mutation p.T998N 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-A6-A566-01 8 139163962 139163962 G T FAM135B Missense_Mutation p.S919Y 0.23 deleterious(0) possibly_damaging(0.553) TCGA-A6-A566-01 8 144995905 144995905 C A PLEC Missense_Mutation p.R2832L 0.13 possibly_damaging(0.665) TCGA-A6-A566-01 8 145057683 145057683 G A PARP10 Missense_Mutation p.P692S 0.07 tolerated(0.97) benign(0.029) TCGA-A6-A566-01 8 145603092 145603092 T C ADCK5 Missense_Mutation p.F10S 0.43 tolerated_low_confidence(0.1) benign(0.157) TCGA-A6-A566-01 8 1719298 1719298 G A CLN8 Silent p.T26T 0.18 TCGA-A6-A566-01 8 2944751 2944751 C A CSMD1 Missense_Mutation p.A2448S 0.44 benign(0.005) TCGA-A6-A566-01 9 104309246 104309246 C T RNF20 Missense_Mutation p.R298W 0.20 deleterious(0) possibly_damaging(0.689) TCGA-A6-A566-01 9 124065220 124065220 G A GSN Silent p.A127A 0.20 TCGA-A6-A566-01 9 133805190 133805190 C T FIBCD1 Missense_Mutation p.A106T 0.18 tolerated_low_confidence(0.42) benign(0.001) TCGA-A6-A566-01 9 134062698 134062698 G A NUP214 Missense_Mutation p.A1148T 0.20 benign(0.07) TCGA-A6-A566-01 9 18829901 18829901 C T ADAMTSL1 Missense_Mutation p.P1392L 0.13 tolerated(0.42) benign(0.002) TCGA-A6-A566-01 9 35066692 35066692 G A VCP Missense_Mutation p.A142V 0.11 deleterious(0.04) possibly_damaging(0.598) TCGA-A6-A566-01 9 35608408 35608408 G A TESK1 Missense_Mutation p.R301H 0.32 deleterious(0) probably_damaging(1) TCGA-A6-A566-01 9 35674189 35674189 C T CA9 Missense_Mutation p.P78L 0.28 deleterious_low_confidence(0.03) benign(0) TCGA-A6-A566-01 9 38596385 38596385 C T ANKRD18A Missense_Mutation p.G318R 0.21 tolerated(0.35) probably_damaging(0.98) TCGA-A6-A566-01 9 98224263 98224263 C A PTCH1 Missense_Mutation p.D860Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-A6-A566-01 9 99538363 99538363 G A ZNF510 5'UTR 0.11 TCGA-A6-A566-01 X 100513315 100513315 T G DRP2 Missense_Mutation p.L803R 0.19 deleterious(0) possibly_damaging(0.663) TCGA-A6-A566-01 X 101139216 101139216 C A ZMAT1 Nonsense_Mutation p.E395* 0.21 TCGA-A6-A566-01 X 106845499 106845499 G A FRMPD3 Silent p.S1443S 0.30 TCGA-A6-A566-01 X 114427067 114427067 G A RBMXL3 Silent p.P1021P 0.15 TCGA-A6-A566-01 X 118215309 118215309 C G KIAA1210 Missense_Mutation p.A1705P 0.20 deleterious(0.01) probably_damaging(0.964) TCGA-A6-A566-01 X 125299168 125299168 G A DCAF12L2 Missense_Mutation p.P247L 0.14 deleterious(0) possibly_damaging(0.907) TCGA-A6-A566-01 X 134166438 134166438 A T FAM127A Nonsense_Mutation p.K9* 0.17 TCGA-A6-A566-01 X 134494497 134494497 C A ZNF449 Missense_Mutation p.H351Q 0.20 deleterious(0.01) probably_damaging(0.924) TCGA-A6-A566-01 X 153037686 153037686 C T PLXNB3 Missense_Mutation p.R930W 0.20 deleterious(0.01) possibly_damaging(0.594) TCGA-A6-A566-01 X 2407717 2407717 G C ZBED1 Missense_Mutation p.S348R 0.21 deleterious(0) possibly_damaging(0.81) TCGA-A6-A566-01 X 36403123 36403123 A T CXorf30 3'UTR 0.17 TCGA-A6-A566-01 X 38158222 38158222 C T RPGR Missense_Mutation p.R411Q 0.11 probably_damaging(0.931) TCGA-A6-A566-01 X 48340877 48340877 C T FTSJ1 Missense_Mutation p.R248C 0.20 tolerated(0.11) benign(0.005) TCGA-A6-A566-01 X 53247105 53247105 C T KDM5C Missense_Mutation p.R132H 0.21 deleterious(0) probably_damaging(0.999) TCGA-A6-A566-01 X 70325962 70325962 C T CXorf65 Silent p.T46T 0.23 TCGA-A6-A566-01 X 72434557 72434557 C T NAP1L2 5'UTR 0.20 TCGA-A6-A566-01 X 73438381 73438381 T C MIR374B 3'Flank 0.14 TCGA-A6-A566-01 X 91090696 91090696 C A PCDH11X Missense_Mutation p.L65I 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-A6-A567-01 10 19820215 19820215 C T MALRD1 Missense_Mutation p.L1184F 0.56 tolerated(0.31) possibly_damaging(0.892) TCGA-A6-A567-01 10 70748864 70748864 G T KIAA1279 Silent p.V92V 0.65 TCGA-A6-A567-01 10 87362198 87362198 C T GRID1 Silent p.P954P 0.49 TCGA-A6-A567-01 11 10580761 10580761 T C LYVE1 Missense_Mutation p.N289S 0.31 tolerated(0.25) benign(0.003) TCGA-A6-A567-01 11 13438791 13438791 G A BTBD10 Nonsense_Mutation p.R201* 0.32 TCGA-A6-A567-01 11 5510141 5510141 C A OR52D1 Missense_Mutation p.L69I 0.33 deleterious(0) probably_damaging(0.996) TCGA-A6-A567-01 11 67200822 67200822 C T RPS6KB2 Silent p.T270T 0.25 TCGA-A6-A567-01 11 7818306 7818306 A C OR5P2 Missense_Mutation p.L62V 0.35 deleterious(0.01) benign(0.32) TCGA-A6-A567-01 11 7981413 7981413 G A NLRP10 Silent p.N582N 0.04 TCGA-A6-A567-01 11 94759419 94759419 G A KDM4E Missense_Mutation p.R233Q 0.40 tolerated(1) benign(0.01) TCGA-A6-A567-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.42 deleterious(0.04) probably_damaging(0.993) TCGA-A6-A567-01 12 53881133 53881133 C A MAP3K12 Missense_Mutation p.G15W 0.27 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-A6-A567-01 12 56211473 56211473 T C SARNP Missense_Mutation p.T5A 0.30 tolerated(0.11) benign(0.01) TCGA-A6-A567-01 12 57490247 57490247 G C STAT6 3'UTR 0.16 TCGA-A6-A567-01 13 103421829 103421829 C A TEX30 Missense_Mutation p.K26N 0.25 tolerated(0.32) benign(0.014) TCGA-A6-A567-01 13 26621169 26621169 C T SHISA2 Missense_Mutation p.V124M 0.49 deleterious(0) probably_damaging(1) TCGA-A6-A567-01 13 96239912 96239912 G A DZIP1 Missense_Mutation p.P700L 0.06 tolerated(1) benign(0) TCGA-A6-A567-01 16 22826393 22826393 C T HS3ST2 Silent p.Y154Y 0.16 TCGA-A6-A567-01 16 30316489 30316489 C A RP11-347C12.2 RNA 0.29 TCGA-A6-A567-01 16 747083 747083 T C FBXL16 Missense_Mutation p.Y108C 0.10 deleterious(0) probably_damaging(0.99) TCGA-A6-A567-01 17 19319159 19319159 G C RNF112 Missense_Mutation p.A523P 0.25 tolerated(0.1) probably_damaging(0.925) TCGA-A6-A567-01 17 21321339 21321339 C T KCNJ12 3'UTR 0.08 TCGA-A6-A567-01 17 21825572 21825572 C T FAM27L Intron 0.30 TCGA-A6-A567-01 17 46058871 46058871 C T CDK5RAP3 3'UTR 0.34 TCGA-A6-A567-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.59 tolerated(0.13) possibly_damaging(0.631) TCGA-A6-A567-01 18 28711818 28711818 T C DSC1 Intron 0.24 TCGA-A6-A567-01 18 29493455 29493455 C A TRAPPC8 Missense_Mutation p.Q216H 0.07 deleterious(0.01) possibly_damaging(0.696) TCGA-A6-A567-01 18 5891559 5891559 G A TMEM200C Silent p.F168F 0.53 TCGA-A6-A567-01 19 11339639 11339639 C T DOCK6 Missense_Mutation p.A931T 0.65 deleterious(0) probably_damaging(0.93) TCGA-A6-A567-01 19 18183110 18183110 G A IL12RB1 Missense_Mutation p.T278M 0.47 tolerated(0.21) benign(0.001) TCGA-A6-A567-01 19 19231860 19231860 G A TMEM161A Missense_Mutation p.R344W 0.11 tolerated(0.07) benign(0.014) TCGA-A6-A567-01 19 44224042 44224042 C T IRGC Silent p.L444L 0.40 TCGA-A6-A567-01 19 50099801 50099801 G A PRR12 Missense_Mutation p.E737K 0.26 possibly_damaging(0.502) TCGA-A6-A567-01 19 51215281 51215281 G A SHANK1 Nonsense_Mutation p.R295* 0.38 TCGA-A6-A567-01 19 57037256 57037256 C T ZNF471 Missense_Mutation p.A607V 0.30 tolerated(0.1) probably_damaging(0.996) TCGA-A6-A567-01 19 57175068 57175068 G A ZNF835 Missense_Mutation p.S500L 0.37 tolerated(0.05) benign(0.007) TCGA-A6-A567-01 1 116310990 116310990 T A CASQ2 Missense_Mutation p.E58V 0.08 tolerated(0.08) possibly_damaging(0.496) TCGA-A6-A567-01 1 1431162 1431162 C T ATAD3B Missense_Mutation p.R638W 0.27 tolerated_low_confidence(0.11) benign(0.04) TCGA-A6-A567-01 1 197144236 197144236 G A ZBTB41 Missense_Mutation p.A630V 0.34 tolerated(0.35) benign(0.063) TCGA-A6-A567-01 1 202279451 202279451 C T LGR6 Silent p.P511P 0.28 TCGA-A6-A567-01 1 21048335 21048335 G A SH2D5 Missense_Mutation p.R408W 0.39 tolerated_low_confidence(0.16) benign(0.009) TCGA-A6-A567-01 1 248005106 248005106 G T OR11L1 Missense_Mutation p.F31L 0.27 deleterious(0.02) benign(0.042) TCGA-A6-A567-01 1 25701879 25701879 A G RHCE Silent p.L372L 0.21 TCGA-A6-A567-01 1 36553097 36553097 C T TEKT2 Missense_Mutation p.R305C 0.35 deleterious(0.01) benign(0.032) TCGA-A6-A567-01 1 53459290 53459290 C A SCP2 Intron 0.32 TCGA-A6-A567-01 2 102003806 102003806 C T CREG2 Silent p.V38V 0.33 TCGA-A6-A567-01 2 152484039 152484039 C T NEB Missense_Mutation p.D3381N 0.07 probably_damaging(1) TCGA-A6-A567-01 2 153529492 153529492 C G PRPF40A Missense_Mutation p.S402T 0.23 tolerated(0.12) benign(0.418) TCGA-A6-A567-01 2 163236517 163236524 GCATGTCA - KCNH7 Frame_Shift_Del p.D991Kfs*12 0.21 TCGA-A6-A567-01 2 179638720 179638720 C A TTN Missense_Mutation p.G2392V 0.33 TCGA-A6-A567-01 2 17998364 17998364 G A MSGN1 Silent p.A193A 0.06 TCGA-A6-A567-01 2 33764180 33764180 C T RASGRP3 Missense_Mutation p.T394M 0.39 deleterious(0.01) benign(0.195) TCGA-A6-A567-01 2 76975920 76975920 G A LRRTM4 Silent p.D558D 0.30 TCGA-A6-A567-01 2 89100791 89100791 G A ANKRD36BP2 RNA 0.36 TCGA-A6-A567-01 3 148558742 148558742 C T CPB1 Missense_Mutation p.R152C 0.30 deleterious(0) probably_damaging(0.95) TCGA-A6-A567-01 3 150480448 150480449 - CCG SIAH2 In_Frame_Ins p.G63dup 0.11 TCGA-A6-A567-01 3 185542608 185542608 G C IGF2BP2 Missense_Mutation p.D47E 0.30 deleterious(0.03) possibly_damaging(0.796) TCGA-A6-A567-01 3 38035759 38035759 A G VILL Missense_Mutation p.Q48R 0.32 tolerated(0.39) benign(0.01) TCGA-A6-A567-01 3 73433832 73433832 C T PDZRN3 Missense_Mutation p.D629N 0.42 deleterious(0.03) possibly_damaging(0.895) TCGA-A6-A567-01 4 107845202 107845202 C T DKK2 Missense_Mutation p.R230H 0.58 deleterious(0) probably_damaging(0.987) TCGA-A6-A567-01 5 112151204 112151204 C T APC Nonsense_Mutation p.R283* 0.40 TCGA-A6-A567-01 5 140346798 140346798 G A PCDHAC2 Silent p.P149P 0.05 TCGA-A6-A567-01 5 146257616 146257616 T A PPP2R2B Intron 0.18 TCGA-A6-A567-01 5 15937258 15937258 G A FBXL7 Missense_Mutation p.R480H 0.30 deleterious(0) probably_damaging(0.948) TCGA-A6-A567-01 5 175782580 175782580 G A KIAA1191 Silent p.L67L 0.07 TCGA-A6-A567-01 5 56510021 56510021 G C GPBP1 Splice_Site p.X21_splice 0.37 TCGA-A6-A567-01 6 117237201 117237201 C T RFX6 Missense_Mutation p.H271Y 0.04 deleterious(0) probably_damaging(0.99) TCGA-A6-A567-01 6 133073711 133073711 T G VNN2 Missense_Mutation p.M239L 0.34 tolerated(0.08) benign(0.015) TCGA-A6-A567-01 6 152786540 152786540 C T SYNE1 Silent p.R595R 0.09 TCGA-A6-A567-01 6 169637838 169637838 G A THBS2 Silent p.S394S 0.37 TCGA-A6-A567-01 6 26659772 26659772 T C ZNF322 5'UTR 0.24 TCGA-A6-A567-01 6 80228508 80228508 C T LCA5 Missense_Mutation p.R35Q 0.34 tolerated(1) benign(0.003) TCGA-A6-A567-01 6 85457769 85457769 C T TBX18 Missense_Mutation p.V270M 0.11 deleterious(0) probably_damaging(0.998) TCGA-A6-A567-01 7 158683961 158683961 C G WDR60 Silent p.G332G 0.04 TCGA-A6-A567-01 7 17843114 17843114 C A SNX13 Missense_Mutation p.M718I 0.35 tolerated(0.25) benign(0.007) TCGA-A6-A567-01 7 26576593 26576593 T A KIAA0087 Nonsense_Mutation p.K66* 0.37 TCGA-A6-A567-01 8 142517260 142517260 C A MROH5 5'UTR 0.42 TCGA-A6-A567-01 X 102332574 102332574 C T NXF3 Missense_Mutation p.V518M 0.67 tolerated(0.57) benign(0.012) TCGA-A6-A567-01 X 152228825 152228825 C T PNMA3 3'UTR 0.70 TCGA-A6-A56B-01 10 115411620 115411620 G A NRAP Missense_Mutation p.T206M 0.25 deleterious(0.02) possibly_damaging(0.762) TCGA-A6-A56B-01 10 45498998 45498998 A T ZNF22 Missense_Mutation p.E61V 0.24 deleterious(0) benign(0.241) TCGA-A6-A56B-01 10 5682649 5682649 C T ASB13 3'UTR 0.19 TCGA-A6-A56B-01 10 81058173 81058173 C T ZMIZ1 Missense_Mutation p.P501L 0.13 probably_damaging(0.961) TCGA-A6-A56B-01 10 92982718 92982718 A G PCGF5 Silent p.T30T 0.10 TCGA-A6-A56B-01 10 98383270 98383270 C T PIK3AP1 Missense_Mutation p.R565Q 0.25 tolerated(0.14) benign(0.141) TCGA-A6-A56B-01 11 125616574 125616574 C A PATE1 Nonsense_Mutation p.S24* 0.20 TCGA-A6-A56B-01 11 16812655 16812655 G A PLEKHA7 Missense_Mutation p.T946I 0.05 deleterious(0) possibly_damaging(0.638) TCGA-A6-A56B-01 11 17483176 17483176 G A ABCC8 Missense_Mutation p.A259V 0.67 deleterious(0) benign(0.436) TCGA-A6-A56B-01 11 28311863 28311863 C A METTL15 Missense_Mutation p.S173Y 0.12 deleterious(0) probably_damaging(1) TCGA-A6-A56B-01 11 49207404 49207404 T A FOLH1 Nonsense_Mutation p.K215* 0.13 TCGA-A6-A56B-01 11 60638732 60638732 G C ZP1 Missense_Mutation p.G353R 0.25 deleterious(0.03) benign(0.381) TCGA-A6-A56B-01 11 763381 763381 A G TALDO1 Missense_Mutation p.T167A 0.22 deleterious(0.02) probably_damaging(0.921) TCGA-A6-A56B-01 11 94039861 94039861 C A FOLR4 Silent p.I107I 0.18 TCGA-A6-A56B-01 12 10772921 10772921 C T STYK1 Missense_Mutation p.R364H 0.26 tolerated(0.28) benign(0.009) TCGA-A6-A56B-01 12 16704208 16704208 G A LMO3 Missense_Mutation p.T151M 0.21 tolerated(0.28) benign(0.096) TCGA-A6-A56B-01 12 20833309 20833309 C A PDE3A 3'UTR 0.50 TCGA-A6-A56B-01 12 49396959 49396959 C T PRKAG1 Missense_Mutation p.E295K 0.24 tolerated(0.29) benign(0.172) TCGA-A6-A56B-01 12 7187965 7187965 C T C1R Silent p.P611P 0.20 TCGA-A6-A56B-01 12 7241295 7241295 C T C1R Missense_Mutation p.E316K 0.47 tolerated(0.67) benign(0.013) TCGA-A6-A56B-01 14 101492092 101492092 C T MIR323A RNA 0.49 TCGA-A6-A56B-01 14 24610520 24610520 C T EMC9 5'UTR 0.34 TCGA-A6-A56B-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.15 TCGA-A6-A56B-01 15 42172471 42172471 C T SPTBN5 Missense_Mutation p.G900S 0.49 benign(0.007) TCGA-A6-A56B-01 15 59182584 59182584 G A SLTM Missense_Mutation p.R659C 0.44 tolerated(0.08) unknown(0) TCGA-A6-A56B-01 15 65497782 65497782 C T CILP Silent p.E149E 0.27 TCGA-A6-A56B-01 15 80800573 80800573 G A ARNT2 Silent p.S233S 0.37 TCGA-A6-A56B-01 16 14761725 14761725 G C BFAR 3'UTR 0.20 TCGA-A6-A56B-01 16 20439126 20439126 C A ACSM5 Missense_Mutation p.P313Q 0.30 deleterious(0) probably_damaging(0.993) TCGA-A6-A56B-01 16 28948349 28948349 G A CD19 Missense_Mutation p.A364T 0.30 tolerated(0.23) probably_damaging(0.982) TCGA-A6-A56B-01 16 31142241 31142241 G A KAT8 Silent p.V444V 0.67 TCGA-A6-A56B-01 16 32892072 32892072 C A SLC6A10P RNA 0.42 TCGA-A6-A56B-01 16 56362628 56362628 G A GNAO1 Missense_Mutation p.R130Q 0.27 tolerated(0.13) benign(0.031) TCGA-A6-A56B-01 16 70954756 70954756 C T HYDIN Missense_Mutation p.R2508H 0.45 probably_damaging(0.923) TCGA-A6-A56B-01 16 85743820 85743820 G A C16orf74 Missense_Mutation p.T41M 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A6-A56B-01 16 87925459 87925459 G A CA5A Silent p.T240T 0.30 TCGA-A6-A56B-01 17 10408129 10408129 C G MYH1 Missense_Mutation p.A897P 0.46 deleterious(0) benign(0.236) TCGA-A6-A56B-01 17 1576806 1576806 C G PRPF8 Missense_Mutation p.V1168L 0.25 tolerated(0.53) benign(0.001) TCGA-A6-A56B-01 17 21319341 21319341 C T KCNJ12 Silent p.R229R 0.11 TCGA-A6-A56B-01 17 27041523 27041523 C G RAB34 3'UTR 0.21 TCGA-A6-A56B-01 17 43592300 43592300 C T LRRC37A4P RNA 0.29 TCGA-A6-A56B-01 17 4711607 4711607 C T PLD2 Silent p.H93H 0.27 TCGA-A6-A56B-01 17 4717953 4717953 C T PLD2 Missense_Mutation p.R374C 0.27 deleterious(0) probably_damaging(0.998) TCGA-A6-A56B-01 17 61489398 61489398 G A TANC2 Missense_Mutation p.V1195I 0.22 deleterious(0.05) benign(0.401) TCGA-A6-A56B-01 17 7369202 7369202 C T ZBTB4 Missense_Mutation p.V307M 0.61 possibly_damaging(0.868) TCGA-A6-A56B-01 17 7579575 7579575 G - TP53 Frame_Shift_Del p.Q38Kfs*6 0.50 TCGA-A6-A56B-01 19 12502448 12502448 C T ZNF799 Missense_Mutation p.C255Y 0.21 deleterious(0.03) probably_damaging(1) TCGA-A6-A56B-01 19 20295250 20295250 G A ZNF486 Missense_Mutation p.R39K 0.24 deleterious(0.05) probably_damaging(0.973) TCGA-A6-A56B-01 19 38384520 38384520 G A WDR87 Missense_Mutation p.A569V 0.30 possibly_damaging(0.626) TCGA-A6-A56B-01 19 4033449 4033449 G A PIAS4 Missense_Mutation p.R338Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-A6-A56B-01 19 44223138 44223138 G A IRGC Missense_Mutation p.R143H 0.30 tolerated(0.07) probably_damaging(0.974) TCGA-A6-A56B-01 19 46185201 46185201 G A GIPR 3'UTR 0.07 TCGA-A6-A56B-01 19 4689681 4689681 C T DPP9 Silent p.T550T 0.41 TCGA-A6-A56B-01 19 51140615 51140615 C T SYT3 Silent p.S18S 0.29 TCGA-A6-A56B-01 19 56466477 56466477 C T NLRP8 Silent p.L351L 0.15 TCGA-A6-A56B-01 19 6312441 6312441 G A ACER1 Missense_Mutation p.R55C 0.48 tolerated(0.11) benign(0.351) TCGA-A6-A56B-01 19 8130814 8130814 G T FBN3 Missense_Mutation p.Q2807K 0.14 tolerated(0.52) benign(0.098) TCGA-A6-A56B-01 19 9018487 9018487 G A MUC16 Missense_Mutation p.R12563C 0.35 probably_damaging(0.923) TCGA-A6-A56B-01 1 12726109 12726109 G T AADACL4 Missense_Mutation p.G196V 0.33 deleterious(0) probably_damaging(0.982) TCGA-A6-A56B-01 1 15430639 15430639 C T KAZN Missense_Mutation p.R668W 0.46 deleterious(0) probably_damaging(0.998) TCGA-A6-A56B-01 1 158653288 158653288 T C SPTA1 Splice_Site p.X89_splice 0.40 TCGA-A6-A56B-01 1 205238114 205238114 G A TMCC2 Missense_Mutation p.A262T 0.21 tolerated(0.21) benign(0.018) TCGA-A6-A56B-01 1 237550598 237550598 C T RYR2 Silent p.N198N 0.26 TCGA-A6-A56B-01 1 27675920 27675920 C A SYTL1 Silent p.A188A 0.27 TCGA-A6-A56B-01 1 45294199 45294199 C A PTCH2 Silent p.A523A 0.56 TCGA-A6-A56B-01 1 64680547 64680547 C T UBE2U Missense_Mutation p.A130V 0.30 deleterious(0) probably_damaging(1) TCGA-A6-A56B-01 1 8934922 8934922 C T ENO1 Missense_Mutation p.G16R 0.36 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-A6-A56B-01 20 58587806 58587806 G T CDH26 3'UTR 0.18 TCGA-A6-A56B-01 21 33057419 33057419 G C SCAF4 Missense_Mutation p.P811A 0.47 unknown(0) TCGA-A6-A56B-01 21 41143130 41143130 C T IGSF5 Missense_Mutation p.R236W 0.53 deleterious(0.01) benign(0.28) TCGA-A6-A56B-01 22 16287473 16287473 C G POTEH Missense_Mutation p.W138S 0.21 tolerated_low_confidence(0.1) benign(0.023) TCGA-A6-A56B-01 22 41605873 41605873 C G L3MBTL2 Silent p.T66T 0.26 TCGA-A6-A56B-01 2 158177803 158177803 C T ERMN Missense_Mutation p.E292K 0.52 deleterious(0) probably_damaging(0.999) TCGA-A6-A56B-01 2 166747087 166747087 C T TTC21B Nonsense_Mutation p.W1055* 0.39 TCGA-A6-A56B-01 2 170557587 170557587 C T PHOSPHO2 Missense_Mutation p.R36C 0.26 deleterious(0) possibly_damaging(0.606) TCGA-A6-A56B-01 2 197757097 197757097 C A PGAP1 Silent p.V354V 0.28 TCGA-A6-A56B-01 2 220072426 220072426 G T ZFAND2B Silent p.G69G 0.26 TCGA-A6-A56B-01 2 233791878 233791878 C T NGEF Silent p.P134P 0.27 TCGA-A6-A56B-01 2 29443591 29443591 C T ALK Missense_Mutation p.R1209Q 0.17 deleterious(0.01) possibly_damaging(0.891) TCGA-A6-A56B-01 2 42909547 42909547 G A MTA3 Missense_Mutation p.A237T 0.45 deleterious(0.02) possibly_damaging(0.538) TCGA-A6-A56B-01 2 80529313 80529313 G A LRRTM1 3'UTR 0.54 TCGA-A6-A56B-01 3 128990664 128990664 C T COPG1 Missense_Mutation p.S633L 0.30 deleterious(0) probably_damaging(0.938) TCGA-A6-A56B-01 3 142841113 142841113 C T CHST2 Silent p.T485T 0.07 TCGA-A6-A56B-01 3 165548421 165548421 T A BCHE Missense_Mutation p.N134I 0.06 deleterious(0.02) probably_damaging(0.968) TCGA-A6-A56B-01 3 171455713 171455713 G A PLD1 Silent p.D43D 0.29 TCGA-A6-A56B-01 3 186507108 186507108 G A EIF4A2 3'UTR 0.19 TCGA-A6-A56B-01 3 38770198 38770198 T C SCN10A Silent p.E825E 0.26 TCGA-A6-A56B-01 3 49038963 49038963 G A P4HTM Missense_Mutation p.E177K 0.42 tolerated(0.08) probably_damaging(0.917) TCGA-A6-A56B-01 3 97673261 97673261 C T MINA Missense_Mutation p.V254M 0.28 deleterious(0) possibly_damaging(0.893) TCGA-A6-A56B-01 4 186381242 186381242 C T CCDC110 Missense_Mutation p.E167K 0.19 tolerated(1) benign(0.001) TCGA-A6-A56B-01 4 83748732 83748732 C T SEC31A Silent p.P1027P 0.12 TCGA-A6-A56B-01 5 112175481 112175481 A - APC Frame_Shift_Del p.E1397Gfs*18 0.43 TCGA-A6-A56B-01 5 115298818 115298818 C T AQPEP Silent p.N168N 0.26 TCGA-A6-A56B-01 5 140207889 140207889 C T PCDHA6 Silent p.R71R 0.11 TCGA-A6-A56B-01 5 140230117 140230117 G A PCDHA9 Silent p.S679S 0.23 TCGA-A6-A56B-01 5 140596098 140596098 G T PCDHB13 3'UTR 0.03 TCGA-A6-A56B-01 5 142416817 142416817 G T ARHGAP26 Nonsense_Mutation p.E401* 0.34 TCGA-A6-A56B-01 5 162896798 162896798 T A HMMR Missense_Mutation p.I142N 0.29 deleterious(0.01) possibly_damaging(0.499) TCGA-A6-A56B-01 5 179292985 179292985 A G TBC1D9B Intron 0.29 TCGA-A6-A56B-01 5 37064836 37064836 C T NIPBL Missense_Mutation p.R2753C 0.73 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-A6-A56B-01 5 50683439 50683439 C T ISL1 Missense_Mutation p.R112C 0.30 deleterious(0) probably_damaging(0.973) TCGA-A6-A56B-01 5 66430433 66430433 G T MAST4 Missense_Mutation p.G770V 0.24 probably_damaging(0.997) TCGA-A6-A56B-01 5 68684910 68684910 G T RAD17 Missense_Mutation p.C326F 0.14 deleterious(0) possibly_damaging(0.588) TCGA-A6-A56B-01 5 78181459 78181459 G A ARSB Missense_Mutation p.H364Y 0.20 deleterious(0.04) benign(0.166) TCGA-A6-A56B-01 6 139610000 139610000 G A TXLNB Nonsense_Mutation p.R13* 0.25 TCGA-A6-A56B-01 6 146480680 146480680 C A GRM1 Silent p.L299L 0.35 TCGA-A6-A56B-01 6 154412346 154412346 C T OPRM1 Silent p.Y394Y 0.49 TCGA-A6-A56B-01 6 159029368 159029368 C T TMEM181 Missense_Mutation p.P363L 0.23 deleterious(0.01) probably_damaging(1) TCGA-A6-A56B-01 6 169648661 169648661 C T THBS2 Missense_Mutation p.V154M 0.51 tolerated(0.06) benign(0.085) TCGA-A6-A56B-01 6 33133538 33133538 C T COL11A2 Missense_Mutation p.R1427Q 0.45 unknown(0) TCGA-A6-A56B-01 7 120428770 120428770 T C TSPAN12 Missense_Mutation p.N265S 0.23 tolerated_low_confidence(0.57) benign(0) TCGA-A6-A56B-01 7 138255609 138255609 C G TRIM24 Missense_Mutation p.T580S 0.46 tolerated(0.74) benign(0.004) TCGA-A6-A56B-01 7 142566336 142566336 G A EPHB6 Missense_Mutation p.A709T 0.51 tolerated(1) benign(0.004) TCGA-A6-A56B-01 7 27570811 27570811 C G HIBADH Missense_Mutation p.K284N 0.28 deleterious(0) probably_damaging(0.992) TCGA-A6-A56B-01 7 28610027 28610027 C T CREB5 Silent p.P112P 0.18 TCGA-A6-A56B-01 7 36397028 36397028 T C KIAA0895 Missense_Mutation p.E117G 0.41 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-A6-A56B-01 7 51111341 51111341 G A COBL Missense_Mutation p.P382L 0.43 tolerated(0.05) benign(0.01) TCGA-A6-A56B-01 7 72742252 72742252 G A FKBP6 5'Flank 0.23 TCGA-A6-A56B-01 8 124799557 124799557 G A FAM91A1 Missense_Mutation p.A379T 0.24 deleterious(0) probably_damaging(0.985) TCGA-A6-A56B-01 8 1871187 1871187 A G ARHGEF10 Missense_Mutation p.D734G 0.67 deleterious(0) probably_damaging(1) TCGA-A6-A56B-01 8 54142379 54142379 G A OPRK1 Silent p.V207V 0.52 TCGA-A6-A56B-01 8 57080688 57080688 C G PLAG1 Missense_Mutation p.E47D 0.27 tolerated(0.2) possibly_damaging(0.899) TCGA-A6-A56B-01 9 119188016 119188016 T A ASTN2 3'UTR 0.57 TCGA-A6-A56B-01 9 139371491 139371492 - A SEC16A Frame_Shift_Ins p.D193* 0.17 TCGA-A6-A56B-01 9 40771997 40771997 G T ZNF658 3'UTR 0.10 TCGA-A6-A56B-01 9 5921755 5921755 G A KIAA2026 Missense_Mutation p.S1414L 0.22 tolerated(0.08) benign(0.132) TCGA-A6-A56B-01 9 99795161 99795161 T G CTSV 3'UTR 0.24 TCGA-A6-A56B-01 9 99795177 99795177 A T CTSV 3'UTR 0.24 TCGA-A6-A56B-01 X 118602448 118602448 C A SLC25A5 5'UTR 0.82 TCGA-A6-A56B-01 X 129149098 129149098 C T BCORL1 Nonsense_Mutation p.R784* 0.83 TCGA-A6-A56B-01 X 30268778 30268778 C A MAGEB1 Silent p.G56G 0.73 TCGA-A6-A56B-01 X 48378923 48378923 G A PORCN 3'UTR 0.28 TCGA-A6-A56B-01 X 48385644 48385644 G A EBP Missense_Mutation p.R147H 0.16 deleterious(0) probably_damaging(0.993) TCGA-A6-A56B-01 X 49646964 49646964 A G USP27X 3'UTR 0.44 TCGA-A6-A56B-01 X 77913686 77913686 T G ZCCHC5 Missense_Mutation p.K78Q 0.40 deleterious(0.03) benign(0.057) TCGA-AA-3489-01 10 121086061 121086061 A G GRK5 Missense_Mutation p.K29R 0.22 tolerated(0.17) probably_damaging(0.946) TCGA-AA-3489-01 10 75551705 75551705 C T ZSWIM8 Missense_Mutation p.R470W 0.25 deleterious(0) possibly_damaging(0.859) TCGA-AA-3489-01 10 96039448 96039448 C T PLCE1 Intron 0.24 TCGA-AA-3489-01 11 118778977 118778977 A G BCL9L Splice_Site p.X138_splice 0.21 TCGA-AA-3489-01 11 119215443 119215443 C T MFRP Missense_Mutation p.R266H 0.24 tolerated(0.54) benign(0.001) TCGA-AA-3489-01 11 124310225 124310225 C T OR8B8 Missense_Mutation p.G253R 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3489-01 11 33079598 33079598 T G TCP11L1 Missense_Mutation p.I184S 0.14 deleterious(0) possibly_damaging(0.794) TCGA-AA-3489-01 11 4388614 4388614 C T OR52B4 Silent p.Q304Q 0.19 TCGA-AA-3489-01 11 45992871 45992871 G A PHF21A Silent p.L136L 0.17 TCGA-AA-3489-01 11 47345227 47345227 C T MADD Silent p.C1461C 0.14 TCGA-AA-3489-01 11 67938545 67938545 C T SUV420H1 Missense_Mutation p.C305Y 0.17 deleterious(0) probably_damaging(0.975) TCGA-AA-3489-01 11 89531572 89531572 C T TRIM49 Missense_Mutation p.R362Q 0.07 tolerated(0.15) benign(0.162) TCGA-AA-3489-01 11 93803625 93803625 T C HEPHL1 Silent p.F383F 0.24 TCGA-AA-3489-01 12 118619364 118619364 G A TAOK3 Nonsense_Mutation p.Q460* 0.19 TCGA-AA-3489-01 12 124413919 124413919 T C DNAH10 Missense_Mutation p.F4017S 0.08 probably_damaging(0.961) TCGA-AA-3489-01 12 49436528 49436528 A G KMT2D Silent p.L1926L 0.33 TCGA-AA-3489-01 12 53010025 53010025 G A KRT73 Missense_Mutation p.T196M 0.18 tolerated(0.23) benign(0.041) TCGA-AA-3489-01 12 7869714 7869714 A G DPPA3 3'UTR 0.14 TCGA-AA-3489-01 12 86383326 86383326 C A MGAT4C 5'UTR 0.19 TCGA-AA-3489-01 12 8902671 8902671 C T RIMKLB Missense_Mutation p.P130L 0.11 tolerated(0.18) benign(0.081) TCGA-AA-3489-01 12 9013553 9013553 T G A2ML1 Splice_Site p.X1113_splice 0.12 TCGA-AA-3489-01 12 94673353 94673353 G T PLXNC1 Nonsense_Mutation p.E1235* 0.16 TCGA-AA-3489-01 13 110895055 110895055 G T COL4A1 Silent p.G37G 0.21 TCGA-AA-3489-01 14 20665898 20665898 G T OR11G2 Missense_Mutation p.C135F 0.27 deleterious(0) probably_damaging(0.969) TCGA-AA-3489-01 14 20915659 20915659 G A OSGEP Missense_Mutation p.A297V 0.20 tolerated(0.2) benign(0.042) TCGA-AA-3489-01 14 21025078 21025078 A T RNASE9 Missense_Mutation p.F56I 0.07 tolerated(0.21) probably_damaging(0.943) TCGA-AA-3489-01 14 36841139 36841139 A G DPPA3P2 RNA 0.06 TCGA-AA-3489-01 14 50319458 50319458 A T NEMF Missense_Mutation p.F5Y 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-AA-3489-01 14 74961659 74961659 C T ISCA2 Nonsense_Mutation p.Q141* 0.18 TCGA-AA-3489-01 15 48714260 48714260 C G FBN1 Missense_Mutation p.D2487H 0.22 probably_damaging(0.984) TCGA-AA-3489-01 15 48784757 48784757 C T FBN1 Missense_Mutation p.G919R 0.15 probably_damaging(1) TCGA-AA-3489-01 15 54847660 54847660 C A UNC13C Missense_Mutation p.L1970M 0.27 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-AA-3489-01 15 81595960 81595960 G T IL16 Missense_Mutation p.G1130V 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3489-01 15 90997775 90997775 G A IQGAP1 Missense_Mutation p.E535K 0.13 deleterious(0) possibly_damaging(0.806) TCGA-AA-3489-01 16 50666194 50666194 T C NKD1 Missense_Mutation p.F233S 0.12 tolerated(0.4) benign(0.016) TCGA-AA-3489-01 16 72110459 72110459 G C HPR Missense_Mutation p.E176Q 0.17 deleterious(0.04) possibly_damaging(0.654) TCGA-AA-3489-01 17 19611810 19611810 T C SLC47A2 Missense_Mutation p.K181R 0.14 tolerated_low_confidence(0.53) benign(0.02) TCGA-AA-3489-01 17 21319687 21319687 T C KCNJ12 Missense_Mutation p.F345L 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3489-01 17 39323974 39323974 G A KRTAP4-3 Missense_Mutation p.R151C 0.20 deleterious(0) unknown(0) TCGA-AA-3489-01 17 43011331 43011331 G C KIF18B Missense_Mutation p.T341S 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-3489-01 17 62492554 62492554 G T POLG2 Missense_Mutation p.S178Y 0.14 deleterious(0) possibly_damaging(0.902) TCGA-AA-3489-01 17 67132371 67132371 G A ABCA6 Missense_Mutation p.P108S 0.15 tolerated(0.27) benign(0.206) TCGA-AA-3489-01 19 11891858 11891858 C T ZNF441 Nonsense_Mutation p.R407* 0.15 TCGA-AA-3489-01 19 14499599 14499599 G A CD97 Silent p.E53E 0.15 TCGA-AA-3489-01 19 17608264 17608264 G A SLC27A1 Missense_Mutation p.M399I 0.21 tolerated(0.82) benign(0.004) TCGA-AA-3489-01 19 35550828 35550828 C T HPN Missense_Mutation p.T114M 0.31 deleterious(0.01) probably_damaging(0.96) TCGA-AA-3489-01 19 36243761 36243761 G A LIN37 Intron 0.21 TCGA-AA-3489-01 19 37905070 37905070 G A ZNF569 Missense_Mutation p.H164Y 0.22 tolerated(1) benign(0) TCGA-AA-3489-01 19 38077422 38077422 T G ZNF571 Intron 0.11 TCGA-AA-3489-01 19 39051828 39051828 G A RYR1 Missense_Mutation p.E4120K 0.29 benign(0.378) TCGA-AA-3489-01 19 42855697 42855697 G A MEGF8 Missense_Mutation p.R924Q 0.23 deleterious(0.01) possibly_damaging(0.889) TCGA-AA-3489-01 19 45324070 45324070 C T BCAM Silent p.F624F 0.13 TCGA-AA-3489-01 19 45667233 45667233 G A TRAPPC6A Missense_Mutation p.A144V 0.20 tolerated(0.06) benign(0.006) TCGA-AA-3489-01 19 55624078 55624078 G A PPP1R12C Missense_Mutation p.T136M 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-3489-01 19 57327978 57327978 C A PEG3 Missense_Mutation p.S611I 0.16 deleterious(0.04) benign(0.389) TCGA-AA-3489-01 19 9084359 9084359 C G MUC16 Missense_Mutation p.G2486R 0.10 unknown(0) TCGA-AA-3489-01 1 118042058 118042058 C G MAN1A2 Missense_Mutation p.A520G 0.36 deleterious(0.02) benign(0.011) TCGA-AA-3489-01 1 150727607 150727607 G C CTSS Missense_Mutation p.S90C 0.12 deleterious(0.02) benign(0.003) TCGA-AA-3489-01 1 156642341 156642341 T C NES Missense_Mutation p.K547E 0.21 tolerated(0.21) benign(0.043) TCGA-AA-3489-01 1 157558994 157558994 C A FCRL4 Missense_Mutation p.D103Y 0.19 deleterious(0.03) possibly_damaging(0.459) TCGA-AA-3489-01 1 158812131 158812131 A T MNDA Missense_Mutation p.D63V 0.14 deleterious(0.03) possibly_damaging(0.892) TCGA-AA-3489-01 1 169798670 169798670 G A C1orf112 Intron 0.19 TCGA-AA-3489-01 1 170964651 170964651 C T MROH9 Missense_Mutation p.P439L 0.16 tolerated(1) benign(0.001) TCGA-AA-3489-01 1 223842087 223842087 G T CAPN8 Missense_Mutation p.S84R 0.11 possibly_damaging(0.572) TCGA-AA-3489-01 1 25558581 25558581 C G SYF2 Intron 0.17 TCGA-AA-3489-01 1 34190121 34190121 A G CSMD2 Silent p.C920C 0.25 TCGA-AA-3489-01 1 40148393 40148393 T C HPCAL4 Missense_Mutation p.M131V 0.09 deleterious(0.01) possibly_damaging(0.479) TCGA-AA-3489-01 1 40310241 40310241 G T TRIT1 Missense_Mutation p.L360I 0.16 deleterious(0.01) benign(0.342) TCGA-AA-3489-01 1 43162555 43162555 G C YBX1 Silent p.R199R 0.14 TCGA-AA-3489-01 1 57476833 57476833 G A DAB1 Silent p.S519S 0.19 TCGA-AA-3489-01 1 70451943 70451943 A G LRRC7 Missense_Mutation p.M231V 0.16 deleterious(0.01) benign(0.007) TCGA-AA-3489-01 20 13107237 13107237 G C SPTLC3 Splice_Site p.X385_splice 0.09 TCGA-AA-3489-01 20 3584844 3584844 C T ATRN Missense_Mutation p.R1246C 0.28 deleterious(0.01) possibly_damaging(0.886) TCGA-AA-3489-01 20 43384802 43384802 G A RIMS4 Silent p.T262T 0.14 TCGA-AA-3489-01 20 467091 467091 T A CSNK2A1 Missense_Mutation p.D330V 0.20 deleterious(0.01) benign(0.001) TCGA-AA-3489-01 20 62076171 62076171 G A KCNQ2 Silent p.I177I 0.21 TCGA-AA-3489-01 21 22707949 22707949 G C NCAM2 Missense_Mutation p.G288R 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3489-01 21 31692300 31692300 G A KRTAP26-1 Silent p.T18T 0.14 TCGA-AA-3489-01 21 47417675 47417675 G A COL6A1 Missense_Mutation p.R508K 0.21 tolerated(0.14) possibly_damaging(0.856) TCGA-AA-3489-01 2 118579455 118579455 C T DDX18 Missense_Mutation p.L257F 0.15 deleterious(0) probably_damaging(0.962) TCGA-AA-3489-01 2 154801133 154801133 T C GALNT13 Silent p.S41S 0.13 TCGA-AA-3489-01 2 165947739 165947739 G T SCN3A Missense_Mutation p.R1642S 0.37 deleterious(0.01) possibly_damaging(0.804) TCGA-AA-3489-01 2 202131233 202131233 T A CASP8 Nonsense_Mutation p.Y67* 0.15 TCGA-AA-3489-01 2 207945960 207945960 G A KLF7 Missense_Mutation p.L296F 0.24 deleterious(0) probably_damaging(0.925) TCGA-AA-3489-01 2 21229976 21229976 A T APOB Missense_Mutation p.V3255D 0.23 possibly_damaging(0.536) TCGA-AA-3489-01 2 216964796 216964796 C T TMEM169 Missense_Mutation p.T142M 0.29 tolerated(0.08) benign(0.008) TCGA-AA-3489-01 2 219445410 219445410 G A RQCD1 Missense_Mutation p.D51N 0.08 tolerated(0.16) benign(0.034) TCGA-AA-3489-01 2 234463174 234463174 T C USP40 Splice_Site p.X195_splice 0.12 TCGA-AA-3489-01 2 27658001 27658001 T C NRBP1 Missense_Mutation p.Y190H 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-AA-3489-01 3 113517229 113517229 C T ATP6V1A Missense_Mutation p.T477M 0.20 deleterious(0.03) possibly_damaging(0.816) TCGA-AA-3489-01 3 131100673 131100673 C T NUDT16 Silent p.L9L 0.15 TCGA-AA-3489-01 3 149485138 149485139 - G ANKUB1 Frame_Shift_Ins p.K437Nfs*36 0.16 TCGA-AA-3489-01 3 178921567 178921567 A G PIK3CA Missense_Mutation p.D350G 0.15 deleterious(0.01) possibly_damaging(0.646) TCGA-AA-3489-01 3 178952090 178952090 G C PIK3CA Missense_Mutation p.G1049R 0.10 tolerated(0.09) possibly_damaging(0.487) TCGA-AA-3489-01 3 36763046 36763046 G A DCLK3 Silent p.Y519Y 0.12 TCGA-AA-3489-01 3 37368085 37368085 C T GOLGA4 Nonsense_Mutation p.Q1592* 0.18 TCGA-AA-3489-01 3 44701182 44701182 G A ZNF35 Missense_Mutation p.D443N 0.15 deleterious(0) probably_damaging(0.974) TCGA-AA-3489-01 3 52400836 52400836 G A DNAH1 Missense_Mutation p.V1900M 0.11 possibly_damaging(0.908) TCGA-AA-3489-01 3 55504505 55504505 C A WNT5A Missense_Mutation p.W253L 0.30 deleterious(0) probably_damaging(0.997) TCGA-AA-3489-01 3 57475324 57475324 A C Y_RNA 5'Flank 0.22 TCGA-AA-3489-01 4 152625018 152625018 C T PET112 Missense_Mutation p.G331E 0.23 tolerated(1) probably_damaging(0.949) TCGA-AA-3489-01 4 71232512 71232512 C A SMR3A Missense_Mutation p.P69Q 0.12 tolerated_low_confidence(0.07) unknown(0) TCGA-AA-3489-01 4 73414536 73414536 G A ADAMTS3 Missense_Mutation p.R55C 0.23 deleterious(0) possibly_damaging(0.832) TCGA-AA-3489-01 4 94377047 94377047 C T GRID2 Nonsense_Mutation p.R594* 0.10 TCGA-AA-3489-01 5 112175466 112175466 C A APC Nonsense_Mutation p.S1392* 0.36 TCGA-AA-3489-01 5 115249091 115249091 A G AP3S1 Silent p.V162V 0.11 TCGA-AA-3489-01 5 140188017 140188017 C A PCDHA4 Silent p.R415R 0.21 TCGA-AA-3489-01 5 140263206 140263206 C T PCDHA13 Silent p.N451N 0.17 TCGA-AA-3489-01 5 140502511 140502512 - C PCDHB4 Frame_Shift_Ins p.I311Tfs*2 0.19 TCGA-AA-3489-01 5 140596906 140596906 C T PCDHB13 3'UTR 0.15 TCGA-AA-3489-01 5 140810510 140810510 C T PCDHGA12 Missense_Mutation p.R62C 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AA-3489-01 5 147040692 147040692 C T JAKMIP2 Missense_Mutation p.R149H 0.18 deleterious(0) probably_damaging(0.989) TCGA-AA-3489-01 5 17276659 17276659 A C BASP1 3'UTR 0.13 TCGA-AA-3489-01 5 41313650 41313650 T A PLCXD3 3'UTR 0.20 TCGA-AA-3489-01 5 54442585 54442585 T A CDC20B Missense_Mutation p.R76W 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-3489-01 5 68590724 68590724 C A CCDC125 Missense_Mutation p.A274S 0.19 tolerated(0.05) benign(0.058) TCGA-AA-3489-01 5 89988438 89988438 T A GPR98 Missense_Mutation p.L2323Q 0.18 probably_damaging(0.979) TCGA-AA-3489-01 5 94727130 94727131 - A FAM81B Frame_Shift_Ins p.R15Kfs*18 0.24 TCGA-AA-3489-01 6 101847111 101847111 A T GRIK2 5'UTR 0.19 TCGA-AA-3489-01 6 10751451 10751451 C T TMEM14B Silent p.N62N 0.16 TCGA-AA-3489-01 6 149997338 149997338 A G LATS1 Intron 0.18 TCGA-AA-3489-01 6 152477149 152477149 G A SYNE1 Silent p.D7958D 0.13 TCGA-AA-3489-01 6 161143437 161143437 C A PLG Intron 0.15 TCGA-AA-3489-01 6 26056330 26056330 C T HIST1H1C Silent p.K109K 0.13 TCGA-AA-3489-01 6 29640185 29640185 G A ZFP57 3'UTR 0.15 TCGA-AA-3489-01 6 32812058 32812058 C G PSMB8 5'Flank 0.28 TCGA-AA-3489-01 6 44374113 44374114 - C CDC5L Frame_Shift_Ins p.K271Nfs*4 0.18 TCGA-AA-3489-01 6 76731925 76731925 C T IMPG1 Missense_Mutation p.V192I 0.22 tolerated(0.18) benign(0.003) TCGA-AA-3489-01 6 80715551 80715554 TTTC ATA TTK Intron 0.30 TCGA-AA-3489-01 7 135307538 135307538 G A NUP205 Missense_Mutation p.M1448I 0.18 tolerated(0.16) benign(0.145) TCGA-AA-3489-01 7 21599222 21599222 C T DNAH11 Missense_Mutation p.P232S 0.19 benign(0.004) TCGA-AA-3489-01 7 42007319 42007319 G A GLI3 Missense_Mutation p.P769L 0.18 tolerated(0.78) benign(0.002) TCGA-AA-3489-01 7 48259036 48259036 A T ABCA13 Missense_Mutation p.I125F 0.14 benign(0.404) TCGA-AA-3489-01 7 75189141 75189141 G T HIP1 Missense_Mutation p.Q424K 0.18 tolerated(0.06) benign(0.002) TCGA-AA-3489-01 7 81612634 81612634 C TT CACNA2D1 Frame_Shift_Ins p.M630Ifs*11 0.13 TCGA-AA-3489-01 7 84636234 84636234 C A SEMA3D Nonsense_Mutation p.E598* 0.11 TCGA-AA-3489-01 7 92732130 92732130 A G SAMD9 Missense_Mutation p.I1094T 0.09 deleterious(0) possibly_damaging(0.802) TCGA-AA-3489-01 7 95045541 95045542 AG - PON2 Intron 0.10 TCGA-AA-3489-01 7 97822850 97822850 G A LMTK2 Missense_Mutation p.D1025N 0.19 deleterious(0.04) probably_damaging(0.915) TCGA-AA-3489-01 8 104453819 104453819 G A DCAF13 Missense_Mutation p.R560H 0.09 deleterious(0.03) benign(0.087) TCGA-AA-3489-01 8 144942068 144942068 C T EPPK1 Missense_Mutation p.R1785H 0.14 benign(0) TCGA-AA-3489-01 8 19263448 19263448 C T CSGALNACT1 Missense_Mutation p.C481Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-3489-01 8 23305248 23305248 A C ENTPD4 Missense_Mutation p.D119E 0.13 tolerated(0.05) possibly_damaging(0.903) TCGA-AA-3489-01 8 37823748 37823748 G A ADRB3 Silent p.A80A 0.35 TCGA-AA-3489-01 8 74888569 74888569 G A TMEM70 Missense_Mutation p.G18E 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.539) TCGA-AA-3489-01 8 87460648 87460648 G C WWP1 Missense_Mutation p.D727H 0.14 deleterious(0) probably_damaging(0.978) TCGA-AA-3489-01 9 134360466 134360466 C T PRRC2B Silent p.F1899F 0.29 TCGA-AA-3489-01 9 139305022 139305022 C A SDCCAG3 5'Flank 0.12 TCGA-AA-3489-01 9 80861690 80861690 C T CEP78 Missense_Mutation p.P295L 0.11 deleterious(0.03) benign(0.009) TCGA-AA-3489-01 9 85611925 85611925 A T RASEF Splice_Site p.X640_splice 0.34 TCGA-AA-3489-01 X 101381931 101381931 C T TCEAL2 Silent p.N43N 0.25 TCGA-AA-3489-01 X 111700263 111700263 G T ZCCHC16 3'UTR 0.38 TCGA-AA-3489-01 X 140993792 140993792 C A MAGEC1 Missense_Mutation p.P201H 0.11 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-AA-3489-01 Y 4967288 4967288 G A PCDH11Y Missense_Mutation p.V557M 0.26 tolerated(0.11) benign(0.054) TCGA-AA-3492-01 10 100374709 100374709 A - HPSE2 Frame_Shift_Del p.F424Lfs*28 0.15 TCGA-AA-3492-01 10 101136883 101136883 G - CNNM1 Frame_Shift_Del p.G751Afs*29 0.34 TCGA-AA-3492-01 10 101486858 101486858 T C COX15 Missense_Mutation p.Y150C 0.38 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 10 101604157 101604157 C T ABCC2 Missense_Mutation p.R1308W 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 10 102824351 102824351 C T KAZALD1 Missense_Mutation p.R256C 0.36 deleterious(0) probably_damaging(0.977) TCGA-AA-3492-01 10 103649208 103649208 G A C10orf76 Silent p.Y607Y 0.10 TCGA-AA-3492-01 10 103867967 103867967 G A LDB1 Silent p.D373D 0.31 TCGA-AA-3492-01 10 103912155 103912155 T C NOLC1 5'UTR 0.55 TCGA-AA-3492-01 10 104141900 104141900 C - GBF1 Frame_Shift_Del p.D1798Tfs*11 0.35 TCGA-AA-3492-01 10 104142098 104142098 G T GBF1 3'UTR 0.21 TCGA-AA-3492-01 10 104240652 104240652 C T ACTR1A Missense_Mutation p.G367S 0.36 deleterious(0.04) probably_damaging(0.961) TCGA-AA-3492-01 10 104850465 104850465 G A NT5C2 Missense_Mutation p.A451V 0.57 deleterious(0) probably_damaging(0.992) TCGA-AA-3492-01 10 105048416 105048416 A - INA Frame_Shift_Del p.I499Yfs*15 0.31 TCGA-AA-3492-01 10 105794459 105794459 G - COL17A1 Frame_Shift_Del p.P1229Rfs*22 0.27 TCGA-AA-3492-01 10 106160447 106160448 GA - CCDC147 Frame_Shift_Del p.D611Yfs*11 0.33 TCGA-AA-3492-01 10 106602563 106602563 T C SORCS3 Missense_Mutation p.L214P 0.46 deleterious(0) probably_damaging(0.977) TCGA-AA-3492-01 10 107022202 107022202 C T SORCS3 Missense_Mutation p.T1186M 0.20 tolerated(0.08) benign(0.048) TCGA-AA-3492-01 10 111651519 111651519 C T XPNPEP1 Missense_Mutation p.A126T 0.40 tolerated(0.46) benign(0.004) TCGA-AA-3492-01 10 112838330 112838330 C T ADRA2A Silent p.G192G 0.50 TCGA-AA-3492-01 10 119043329 119043329 G T PDZD8 Missense_Mutation p.P972H 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 10 11911885 11911885 C T PROSER2 Missense_Mutation p.A263V 0.25 tolerated(0.13) benign(0.416) TCGA-AA-3492-01 10 120353717 120353717 C T PRLHR Missense_Mutation p.R347H 0.37 deleterious(0.03) probably_damaging(0.95) TCGA-AA-3492-01 10 121590954 121590954 T C MCMBP 3'UTR 0.39 TCGA-AA-3492-01 10 122650306 122650306 A G WDR11 Missense_Mutation p.K808E 0.39 tolerated(0.05) possibly_damaging(0.621) TCGA-AA-3492-01 10 123844356 123844356 C - TACC2 Frame_Shift_Del p.Q783Rfs*32 0.29 TCGA-AA-3492-01 10 124377644 124377644 A T DMBT1 Missense_Mutation p.D1539V 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 10 124597030 124597030 T A CUZD1 Silent p.G163G 0.31 TCGA-AA-3492-01 10 124754086 124754086 C T IKZF5 Missense_Mutation p.R157Q 0.29 tolerated(0.1) probably_damaging(0.953) TCGA-AA-3492-01 10 125434404 125434404 A G GPR26 Missense_Mutation p.I247V 0.31 tolerated(0.14) possibly_damaging(0.533) TCGA-AA-3492-01 10 127456139 127456139 G A MMP21 Nonsense_Mutation p.R458* 0.29 TCGA-AA-3492-01 10 127483521 127483521 A - UROS Frame_Shift_Del p.F196Lfs*44 0.36 TCGA-AA-3492-01 10 127541724 127541724 T G BCCIP Missense_Mutation p.V294G 0.50 deleterious_low_confidence(0.04) unknown(0) TCGA-AA-3492-01 10 128835996 128835996 G A DOCK1 Silent p.G621G 0.21 TCGA-AA-3492-01 10 129910464 129910464 A T MKI67 Missense_Mutation p.S634R 0.36 deleterious(0) probably_damaging(0.916) TCGA-AA-3492-01 10 129913670 129913670 G A MKI67 Silent p.G334G 0.44 TCGA-AA-3492-01 10 134162530 134162530 C T LRRC27 Intron 0.36 TCGA-AA-3492-01 10 134699353 134699353 G A TTC40 Nonsense_Mutation p.Q1139* 0.40 TCGA-AA-3492-01 10 134735661 134735661 G A TTC40 Missense_Mutation p.A518V 0.13 deleterious(0.03) probably_damaging(0.994) TCGA-AA-3492-01 10 134997427 134997427 G A KNDC1 Missense_Mutation p.V187M 0.38 deleterious(0.01) benign(0.027) TCGA-AA-3492-01 10 13628988 13628988 T C PRPF18 5'UTR 0.48 TCGA-AA-3492-01 10 14950433 14950433 T - DCLRE1C Frame_Shift_Del p.R685Efs*6 0.26 TCGA-AA-3492-01 10 14961760 14961760 G A DCLRE1C Missense_Mutation p.A378V 0.33 tolerated(0.25) benign(0.009) TCGA-AA-3492-01 10 16955878 16955878 G A CUBN Missense_Mutation p.R2489W 0.46 deleterious(0) benign(0.002) TCGA-AA-3492-01 10 17026110 17026110 T C CUBN Missense_Mutation p.T1507A 0.47 tolerated(0.09) benign(0.007) TCGA-AA-3492-01 10 17363200 17363200 C A ST8SIA6 Missense_Mutation p.A292S 0.20 tolerated(0.46) benign(0.016) TCGA-AA-3492-01 10 17636377 17636377 T A PTPLA Missense_Mutation p.N204I 0.37 deleterious(0) probably_damaging(0.984) TCGA-AA-3492-01 10 18198278 18198278 T C MRC1 Splice_Site p.X1374_splice 0.51 TCGA-AA-3492-01 10 18834895 18834895 A - NSUN6 Frame_Shift_Del p.F459Lfs*6 0.29 TCGA-AA-3492-01 10 19787412 19787412 A G MALRD1 Splice_Site p.X1099_splice 0.54 TCGA-AA-3492-01 10 22030936 22030936 G A MLLT10 3'UTR 0.10 TCGA-AA-3492-01 10 23633552 23633552 C T C10orf67 Missense_Mutation p.R52H 0.44 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-AA-3492-01 10 26500957 26500957 C A MYO3A 3'UTR 0.33 TCGA-AA-3492-01 10 27436266 27436266 T C YME1L1 Intron 0.46 TCGA-AA-3492-01 10 27538155 27538155 G T RP11-85G18.6 Intron 0.47 TCGA-AA-3492-01 10 27702348 27702348 G T PTCHD3 Missense_Mutation p.L278I 0.23 deleterious(0.04) benign(0.155) TCGA-AA-3492-01 10 28272839 28272839 A G ARMC4 Missense_Mutation p.L251P 0.32 deleterious(0.02) benign(0.397) TCGA-AA-3492-01 10 30625759 30625759 A G MTPAP Silent p.D251D 0.28 TCGA-AA-3492-01 10 30986424 30986424 G A SVILP1 RNA 0.36 TCGA-AA-3492-01 10 3151645 3151645 C T PFKP Silent p.R354R 0.35 TCGA-AA-3492-01 10 3154433 3154433 C T PFKP Missense_Mutation p.A370V 0.34 deleterious(0) possibly_damaging(0.626) TCGA-AA-3492-01 10 31610379 31610379 A T ZEB1 Intron 0.41 TCGA-AA-3492-01 10 3172132 3172132 C T PFKP Missense_Mutation p.A602V 0.31 deleterious(0.02) benign(0.18) TCGA-AA-3492-01 10 3189407 3189407 A G PITRM1 Silent p.D758D 0.38 TCGA-AA-3492-01 10 33067965 33067965 C T C10ORF68 Intron 0.43 TCGA-AA-3492-01 10 35894497 35894497 T C GJD4 Translation_Start_Site p.M1? 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-3492-01 10 37414869 37414869 C T ANKRD30A 5'UTR 0.38 TCGA-AA-3492-01 10 38343762 38343762 A G ZNF33A Missense_Mutation p.Q237R 0.16 tolerated(0.34) benign(0.002) TCGA-AA-3492-01 10 38344006 38344006 C G ZNF33A Missense_Mutation p.H318Q 0.17 tolerated(0.65) benign(0) TCGA-AA-3492-01 10 38406851 38406851 C A ZNF37A Missense_Mutation p.L258I 0.42 deleterious(0.03) benign(0.032) TCGA-AA-3492-01 10 43089675 43089675 A G ZNF33B Silent p.N241N 0.17 TCGA-AA-3492-01 10 45429158 45429158 G T TMEM72 Missense_Mutation p.A95S 0.18 tolerated(0.17) possibly_damaging(0.846) TCGA-AA-3492-01 10 45477989 45477989 C T RASSF4 Silent p.I53I 0.43 TCGA-AA-3492-01 10 45799045 45799045 C T OR13A1 Missense_Mutation p.A276T 0.40 tolerated(1) benign(0.063) TCGA-AA-3492-01 10 45799416 45799416 C T OR13A1 Missense_Mutation p.S152N 0.36 tolerated(0.08) benign(0.004) TCGA-AA-3492-01 10 46998898 46998898 C T GPRIN2 Silent p.P6P 0.21 TCGA-AA-3492-01 10 47948765 47948765 G A FAM21B Missense_Mutation p.R1225Q 0.37 tolerated(0.42) benign(0.003) TCGA-AA-3492-01 10 4873014 4873014 G T AKR1E2 Missense_Mutation p.D63Y 0.08 deleterious(0) probably_damaging(0.992) TCGA-AA-3492-01 10 49633233 49633233 G T MAPK8 Intron 0.25 TCGA-AA-3492-01 10 49661399 49661399 A - ARHGAP22 Frame_Shift_Del p.F328Lfs*10 0.22 TCGA-AA-3492-01 10 49986769 49986769 C T WDFY4 Missense_Mutation p.R1097C 0.45 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 10 50105524 50105524 C A WDFY4 Missense_Mutation p.L2448M 0.38 tolerated(0.8) benign(0.021) TCGA-AA-3492-01 10 50944454 50944454 C T OGDHL Silent p.E901E 0.52 TCGA-AA-3492-01 10 52103593 52103593 G A SGMS1 Silent p.P94P 0.36 TCGA-AA-3492-01 10 60154908 60154908 G A TFAM 3'UTR 0.29 TCGA-AA-3492-01 10 60558977 60558977 A - BICC1 Frame_Shift_Del p.I566Sfs*5 0.47 TCGA-AA-3492-01 10 61926635 61926635 T G ANK3 Missense_Mutation p.K833T 0.32 probably_damaging(0.993) TCGA-AA-3492-01 10 63851311 63851311 T C ARID5B Missense_Mutation p.S697P 0.44 deleterious(0) probably_damaging(0.958) TCGA-AA-3492-01 10 63959609 63959609 G A RTKN2 Missense_Mutation p.H400Y 0.41 deleterious(0) possibly_damaging(0.811) TCGA-AA-3492-01 10 64567782 64567782 A G ADO 3'UTR 0.40 TCGA-AA-3492-01 10 69926153 69926153 C A MYPN Missense_Mutation p.P568Q 0.46 tolerated(0.1) benign(0.157) TCGA-AA-3492-01 10 69970161 69970161 G A MYPN Silent p.T1304T 0.38 TCGA-AA-3492-01 10 70726779 70726779 C T DDX21 Missense_Mutation p.R304C 0.51 tolerated(0.19) benign(0.005) TCGA-AA-3492-01 10 71025435 71025435 G A HKDC1 Missense_Mutation p.G823R 0.10 tolerated(0.38) probably_damaging(0.988) TCGA-AA-3492-01 10 73406385 73406385 G A CDH23 Missense_Mutation p.R487H 0.36 deleterious_low_confidence(0.01) benign(0.149) TCGA-AA-3492-01 10 73437304 73437304 C T CDH23 Missense_Mutation p.R128W 0.30 deleterious(0) probably_damaging(0.924) TCGA-AA-3492-01 10 73453911 73453913 CAC - CDH23 In_Frame_Del p.T323del 0.39 TCGA-AA-3492-01 10 73461950 73461950 G A CDH23 Missense_Mutation p.V449I 0.45 tolerated(0.56) benign(0.032) TCGA-AA-3492-01 10 73823990 73823991 - G SPOCK2 Frame_Shift_Ins p.C313Lfs*37 0.29 TCGA-AA-3492-01 10 73826773 73826773 G A SPOCK2 Missense_Mutation p.A272V 0.32 deleterious(0) probably_damaging(0.918) TCGA-AA-3492-01 10 75408402 75408402 G A SYNPO2L Silent p.D336D 0.51 TCGA-AA-3492-01 10 75528787 75528787 T C SEC24C Silent p.F767F 0.45 TCGA-AA-3492-01 10 76603181 76603181 G A KAT6B Missense_Mutation p.S189N 0.41 benign(0.001) TCGA-AA-3492-01 10 76797676 76797676 C T DUPD1 Missense_Mutation p.R194Q 0.32 tolerated(0.22) probably_damaging(0.999) TCGA-AA-3492-01 10 76993924 76993925 CA - COMTD1 Frame_Shift_Del p.V232Afs*? 0.43 TCGA-AA-3492-01 10 79742042 79742042 G A POLR3A Missense_Mutation p.A1210V 0.25 tolerated(0.07) benign(0.122) TCGA-AA-3492-01 10 8092763 8092763 C T GATA3 5'Flank 0.60 TCGA-AA-3492-01 10 81146068 81146068 G - ZCCHC24 3'UTR 0.27 TCGA-AA-3492-01 10 8115779 8115780 - A GATA3 Frame_Shift_Ins p.V379Sfs*3 0.25 TCGA-AA-3492-01 10 81928878 81928878 G - ANXA11 Frame_Shift_Del p.G137Dfs*14 0.27 TCGA-AA-3492-01 10 88702382 88702382 C T MMRN2 Missense_Mutation p.G720E 0.39 tolerated(0.26) benign(0) TCGA-AA-3492-01 10 90122343 90122343 G A RNLS Silent p.R222R 0.39 TCGA-AA-3492-01 10 91066524 91066524 A T IFIT2 Nonsense_Mutation p.K271* 0.36 TCGA-AA-3492-01 10 92508772 92508772 G A HTR7 Silent p.G373G 0.28 TCGA-AA-3492-01 10 92617258 92617258 C T HTR7 Silent p.A57A 0.71 TCGA-AA-3492-01 10 94228698 94228698 G A IDE Missense_Mutation p.A753V 0.27 tolerated(0.52) benign(0.011) TCGA-AA-3492-01 10 95661365 95661365 C A SLC35G1 3'UTR 0.34 TCGA-AA-3492-01 10 97919392 97919393 - T ZNF518A RNA 0.27 TCGA-AA-3492-01 10 98763841 98763841 C T SLIT1 Silent p.A1283A 0.31 TCGA-AA-3492-01 10 99025839 99025839 G A ARHGAP19 Nonsense_Mutation p.R34* 0.36 TCGA-AA-3492-01 10 99358900 99358900 C T HOGA1 Missense_Mutation p.A132V 0.41 tolerated(0.28) benign(0.061) TCGA-AA-3492-01 11 100858324 100858324 G A ARHGAP42 Splice_Site p.X846_splice 0.38 TCGA-AA-3492-01 11 1016173 1016173 C T MUC6 Missense_Mutation p.A2210T 0.42 benign(0.002) TCGA-AA-3492-01 11 1017539 1017539 G T MUC6 Silent p.S1754S 0.13 TCGA-AA-3492-01 11 1018097 1018097 C T MUC6 Silent p.R1568R 0.27 TCGA-AA-3492-01 11 103025250 103025250 G A DYNC2H1 Missense_Mutation p.E1125K 0.39 benign(0.014) TCGA-AA-3492-01 11 1031992 1031992 G A MUC6 Silent p.H59H 0.17 TCGA-AA-3492-01 11 10328068 10328068 C T ADM Silent p.Y146Y 0.44 TCGA-AA-3492-01 11 1036632 1036632 C T MUC6 Silent p.L8L 0.42 TCGA-AA-3492-01 11 103907676 103907676 C T PDGFD Intron 0.40 TCGA-AA-3492-01 11 107506460 107506460 A G ELMOD1 Missense_Mutation p.D130G 0.38 deleterious(0.03) benign(0.364) TCGA-AA-3492-01 11 108043044 108043044 C T NPAT Silent p.V889V 0.47 TCGA-AA-3492-01 11 108098609 108098609 T - ATM Frame_Shift_Del p.F61Lfs*15 0.33 TCGA-AA-3492-01 11 1104328 1104328 T A MUC2 3'UTR 0.54 TCGA-AA-3492-01 11 111365888 111365888 C A BTG4 Missense_Mutation p.R221I 0.31 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AA-3492-01 11 113660392 113660393 - TT ATF4P4 RNA 0.22 TCGA-AA-3492-01 11 11374700 11374700 T C CSNK2A3 5'UTR 0.36 TCGA-AA-3492-01 11 113857250 113857250 G A HTR3A Missense_Mutation p.R245H 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 11 113935069 113935069 G A ZBTB16 Silent p.P349P 0.47 TCGA-AA-3492-01 11 116658298 116658298 A G ZNF259 Missense_Mutation p.F78S 0.52 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 11 116730133 116730133 G A SIK3 Silent p.G765G 0.50 TCGA-AA-3492-01 11 117077878 117077878 T C PCSK7 Splice_Site p.X596_splice 0.18 TCGA-AA-3492-01 11 117167614 117167614 G T BACE1 Missense_Mutation p.L109M 0.45 deleterious(0) probably_damaging(0.986) TCGA-AA-3492-01 11 117389359 117389359 G A DSCAML1 Silent p.D504D 0.30 TCGA-AA-3492-01 11 117691417 117691417 G - FXYD2 Intron 0.38 TCGA-AA-3492-01 11 11863744 11863744 C T USP47 Silent p.G4G 0.39 TCGA-AA-3492-01 11 119182271 119182271 C T MCAM Missense_Mutation p.R459Q 0.47 tolerated(0.2) benign(0.037) TCGA-AA-3492-01 11 119234627 119234627 G A USP2 Intron 0.60 TCGA-AA-3492-01 11 119549226 119549226 C T PVRL1 Missense_Mutation p.R110H 0.23 tolerated(0.16) possibly_damaging(0.523) TCGA-AA-3492-01 11 120343813 120343813 T C ARHGEF12 Missense_Mutation p.Y1004H 0.47 tolerated(0.13) benign(0.002) TCGA-AA-3492-01 11 121032949 121032949 C T TECTA Silent p.Y1714Y 0.30 TCGA-AA-3492-01 11 12234929 12234929 A T MICAL2 Missense_Mutation p.K273N 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 11 123597094 123597094 G A ZNF202 Nonsense_Mutation p.Q520* 0.47 TCGA-AA-3492-01 11 123598945 123598945 G A ZNF202 Missense_Mutation p.A243V 0.40 deleterious(0) possibly_damaging(0.832) TCGA-AA-3492-01 11 124956252 124956252 C A SLC37A2 Intron 0.15 TCGA-AA-3492-01 11 125617652 125617652 C T PATE1 Missense_Mutation p.S61F 0.36 tolerated(0.09) benign(0.051) TCGA-AA-3492-01 11 126135273 126135273 G A SRPR Missense_Mutation p.R401C 0.38 deleterious(0) probably_damaging(0.95) TCGA-AA-3492-01 11 1264220 1264220 C T MUC5B Missense_Mutation p.A2037V 0.29 unknown(0) TCGA-AA-3492-01 11 1270841 1270841 C T MUC5B Missense_Mutation p.P4244L 0.39 benign(0.418) TCGA-AA-3492-01 11 128709888 128709888 G A KCNJ1 Missense_Mutation p.A103V 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3492-01 11 128846506 128846506 G A ARHGAP32 Missense_Mutation p.R702C 0.38 deleterious(0) probably_damaging(0.912) TCGA-AA-3492-01 11 128850531 128850531 C T ARHGAP32 Silent p.T617T 0.44 TCGA-AA-3492-01 11 129801998 129801998 T C PRDM10 Missense_Mutation p.Q429R 0.32 tolerated(0.1) probably_damaging(0.979) TCGA-AA-3492-01 11 130131662 130131662 C T ZBTB44 Missense_Mutation p.R36H 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 11 130343305 130343305 C A ADAMTS15 Missense_Mutation p.D814E 0.33 tolerated(1) benign(0) TCGA-AA-3492-01 11 1311498 1311498 G A TOLLIP Missense_Mutation p.P109S 0.41 tolerated(0.05) probably_damaging(0.919) TCGA-AA-3492-01 11 131781318 131781318 G A NTM 5'Flank 0.38 TCGA-AA-3492-01 11 134018468 134018468 G - JAM3 Frame_Shift_Del p.V249Ffs*10 0.36 TCGA-AA-3492-01 11 134028262 134028262 A G NCAPD3 Silent p.P1332P 0.28 TCGA-AA-3492-01 11 134109934 134109934 G A VPS26B Missense_Mutation p.E144K 0.35 deleterious(0) probably_damaging(0.983) TCGA-AA-3492-01 11 134118353 134118353 C T THYN1 Silent p.L219L 0.35 TCGA-AA-3492-01 11 134121181 134121181 C T THYN1 Missense_Mutation p.R22H 0.16 tolerated(0.07) benign(0.008) TCGA-AA-3492-01 11 134253673 134253673 C T B3GAT1 Silent p.L174L 0.33 TCGA-AA-3492-01 11 13514056 13514056 G A PTH Missense_Mutation p.P82S 0.39 tolerated(0.53) benign(0.019) TCGA-AA-3492-01 11 14479397 14479397 G A COPB1 Silent p.N945N 0.33 TCGA-AA-3492-01 11 14487847 14487847 T C COPB1 Silent p.T757T 0.36 TCGA-AA-3492-01 11 15260608 15260608 G A INSC Missense_Mutation p.V508M 0.23 deleterious(0.01) possibly_damaging(0.831) TCGA-AA-3492-01 11 1629691 1629691 C T KRTAP5-3 5'UTR 0.41 TCGA-AA-3492-01 11 1651190 1651190 C T KRTAP5-5 Silent p.S40S 0.35 TCGA-AA-3492-01 11 17191197 17191197 G T PIK3C2A Missense_Mutation p.A31E 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3492-01 11 17552728 17552728 G A USH1C Silent p.G120G 0.34 TCGA-AA-3492-01 11 17803296 17803296 C T KCNC1 3'UTR 0.25 TCGA-AA-3492-01 11 18362844 18362844 T C GTF2H1 Missense_Mutation p.M215T 0.38 deleterious(0.03) benign(0.378) TCGA-AA-3492-01 11 1862699 1862699 G A TNNI2 Missense_Mutation p.R156Q 0.38 tolerated(0.08) benign(0.277) TCGA-AA-3492-01 11 199454 199454 A G ODF3 Missense_Mutation p.E207G 0.35 tolerated(0.37) benign(0.049) TCGA-AA-3492-01 11 2436558 2436558 G A TRPM5 Silent p.R424R 0.75 TCGA-AA-3492-01 11 26660745 26660745 T - ANO3 Frame_Shift_Del p.L701* 0.31 TCGA-AA-3492-01 11 280763 280763 C T NLRP6 Silent p.C343C 0.45 TCGA-AA-3492-01 11 299405 299405 G - IFITM5 Frame_Shift_Del p.P29Rfs*9 0.41 TCGA-AA-3492-01 11 31816185 31816185 C T PAX6 Silent p.L239L 0.37 TCGA-AA-3492-01 11 32460368 32460368 C T WT1 5'Flank 0.64 TCGA-AA-3492-01 11 34111796 34111796 C T CAPRIN1 Missense_Mutation p.T455I 0.42 tolerated(0.25) benign(0.011) TCGA-AA-3492-01 11 34501665 34501665 A - ELF5 3'UTR 0.82 TCGA-AA-3492-01 11 36250780 36250780 C - LDLRAD3 Frame_Shift_Del p.Y293Tfs*20 0.29 TCGA-AA-3492-01 11 3688800 3688800 G A CHRNA10 Missense_Mutation p.P186L 0.45 tolerated(0.59) benign(0.007) TCGA-AA-3492-01 11 40135806 40135807 - T LRRC4C 3'UTR 0.43 TCGA-AA-3492-01 11 40136158 40136158 G - LRRC4C Frame_Shift_Del p.P562Qfs*34 0.25 TCGA-AA-3492-01 11 43364021 43364021 G T API5 Missense_Mutation p.W512C 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3492-01 11 44097102 44097102 G A ACCS Silent p.S172S 0.57 TCGA-AA-3492-01 11 4510786 4510786 C A OR52K1 Missense_Mutation p.S219Y 0.41 deleterious(0) benign(0.309) TCGA-AA-3492-01 11 45827546 45827546 G A SLC35C1 Missense_Mutation p.S65N 0.52 tolerated(0.19) benign(0.008) TCGA-AA-3492-01 11 45924031 45924031 G A MAPK8IP1 Missense_Mutation p.R238H 0.12 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 11 45955607 45955607 G - PHF21A Frame_Shift_Del p.P652Lfs*104 0.35 TCGA-AA-3492-01 11 46564939 46564939 C T AMBRA1 Missense_Mutation p.E210K 0.39 deleterious_low_confidence(0.04) benign(0.405) TCGA-AA-3492-01 11 4674564 4674564 C T OR51E1 Missense_Mutation p.R270C 0.39 tolerated(0.14) possibly_damaging(0.466) TCGA-AA-3492-01 11 47270480 47270480 A G ACP2 5'Flank 0.27 TCGA-AA-3492-01 11 47372110 47372110 G T MYBPC3 Missense_Mutation p.P117T 0.44 deleterious(0.04) benign(0.001) TCGA-AA-3492-01 11 47602157 47602157 T C NDUFS3 Missense_Mutation p.Y72H 0.43 deleterious(0.03) probably_damaging(0.987) TCGA-AA-3492-01 11 49974283 49974283 T - OR4C13 Frame_Shift_Del p.F105Sfs*11 0.10 TCGA-AA-3492-01 11 5345099 5345099 T A OR51B2 Silent p.G143G 0.34 TCGA-AA-3492-01 11 551727 551727 G A LRRC56 Silent p.R291R 0.39 TCGA-AA-3492-01 11 55406585 55406585 C A OR4P4 Missense_Mutation p.P251H 0.85 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 11 55563390 55563390 T A OR5D14 Missense_Mutation p.M120K 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3492-01 11 55798539 55798539 T G OR5AS1 Missense_Mutation p.F215L 0.39 tolerated(1) benign(0.005) TCGA-AA-3492-01 11 56020267 56020267 T G OR5T3 Missense_Mutation p.F198V 0.40 deleterious(0) probably_damaging(0.982) TCGA-AA-3492-01 11 56230676 56230676 C T OR5M9 Missense_Mutation p.D68N 0.41 deleterious(0.01) possibly_damaging(0.728) TCGA-AA-3492-01 11 562380 562380 G T RASSF7 Silent p.A142A 0.35 TCGA-AA-3492-01 11 5686820 5686821 - A TRIM5 Intron 0.23 TCGA-AA-3492-01 11 57077174 57077174 C G TNKS1BP1 Missense_Mutation p.S1004T 0.37 tolerated(0.17) benign(0.385) TCGA-AA-3492-01 11 57081328 57081328 G - TNKS1BP1 Frame_Shift_Del p.S279Pfs*56 0.27 TCGA-AA-3492-01 11 5758138 5758138 G T OR56B1 Missense_Mutation p.R131I 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 11 57799099 57799099 C T OR6Q1 Silent p.I225I 0.28 TCGA-AA-3492-01 11 57948604 57948604 C T OR9Q1 3'UTR 0.44 TCGA-AA-3492-01 11 58891898 58891898 G A FAM111B Missense_Mutation p.A110T 0.42 deleterious(0.01) possibly_damaging(0.734) TCGA-AA-3492-01 11 58920087 58920087 A - FAM111A Frame_Shift_Del p.M318* 0.34 TCGA-AA-3492-01 11 59559673 59559673 C T STX3 Missense_Mutation p.R151W 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 11 60198332 60198332 T C MS4A5 Silent p.L73L 0.27 TCGA-AA-3492-01 11 6023531 6023531 A T OR56A4 Missense_Mutation p.I283N 0.39 deleterious(0) possibly_damaging(0.894) TCGA-AA-3492-01 11 60557838 60557838 C T MS4A10 Silent p.S10S 0.41 TCGA-AA-3492-01 11 60714170 60714170 G A SLC15A3 Silent p.L228L 0.44 TCGA-AA-3492-01 11 61067526 61067526 A G DDB1 3'UTR 0.38 TCGA-AA-3492-01 11 61111712 61111712 G A DAK Missense_Mutation p.D403N 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 11 61135990 61135990 G A TMEM138 Intron 0.33 TCGA-AA-3492-01 11 61488150 61488150 G T DAGLA Splice_Site p.X32_splice 0.31 TCGA-AA-3492-01 11 61723369 61723369 G A BEST1 Missense_Mutation p.V83I 0.42 tolerated(0.38) benign(0.107) TCGA-AA-3492-01 11 61916012 61916012 G A INCENP Missense_Mutation p.E757K 0.40 tolerated(0.13) unknown(0) TCGA-AA-3492-01 11 61957794 61957794 C T SCGB1D1 Missense_Mutation p.A13V 0.35 deleterious(0) unknown(0) TCGA-AA-3492-01 11 62365846 62365846 T C MTA2 Missense_Mutation p.T109A 0.39 tolerated(0.23) probably_damaging(0.992) TCGA-AA-3492-01 11 62369979 62369980 - G EML3 Frame_Shift_Ins p.S887Lfs*69 0.53 TCGA-AA-3492-01 11 62396371 62396371 G A GANAB Nonsense_Mutation p.R706* 0.37 TCGA-AA-3492-01 11 62433234 62433234 A G METTL12 5'UTR 0.50 TCGA-AA-3492-01 11 63682286 63682286 C T RCOR2 Silent p.A107A 0.28 TCGA-AA-3492-01 11 63782754 63782754 C T MACROD1 Splice_Site p.X173_splice 0.41 TCGA-AA-3492-01 11 63967471 63967473 GGA - STIP1 In_Frame_Del p.E363del 0.45 TCGA-AA-3492-01 11 63992368 63992368 C T TRPT1 Missense_Mutation p.V78M 0.48 deleterious(0) probably_damaging(0.97) TCGA-AA-3492-01 11 6413332 6413332 C T SMPD1 Missense_Mutation p.A346V 0.34 tolerated(0.06) probably_damaging(0.911) TCGA-AA-3492-01 11 64329831 64329831 G A SLC22A11 Missense_Mutation p.A249T 0.27 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 11 64367274 64367274 G C SLC22A12 Silent p.L399L 0.40 TCGA-AA-3492-01 11 64572093 64572093 G - MEN1 Frame_Shift_Del p.R521Gfs*43 0.33 TCGA-AA-3492-01 11 64673888 64673888 G A ATG2A Missense_Mutation p.S1034L 0.32 tolerated(0.14) benign(0.001) TCGA-AA-3492-01 11 64898748 64898748 A G SYVN1 Missense_Mutation p.M252T 0.35 deleterious(0) benign(0.129) TCGA-AA-3492-01 11 65123907 65123907 C T TIGD3 Missense_Mutation p.R210W 0.29 deleterious(0.03) probably_damaging(0.958) TCGA-AA-3492-01 11 65147645 65147645 G A SLC25A45 Silent p.G13G 0.43 TCGA-AA-3492-01 11 65387815 65387815 C T PCNXL3 Missense_Mutation p.R672W 0.44 tolerated(0.19) benign(0.002) TCGA-AA-3492-01 11 65393482 65393482 G A PCNXL3 Silent p.Q1112Q 0.34 TCGA-AA-3492-01 11 65409819 65409819 A G SIPA1 Missense_Mutation p.S260G 0.26 deleterious(0.02) benign(0.374) TCGA-AA-3492-01 11 65545457 65545457 G - AP5B1 Frame_Shift_Del p.P836Rfs*65 0.33 TCGA-AA-3492-01 11 6586965 6586965 G A DNHD1 Silent p.T3599T 0.41 TCGA-AA-3492-01 11 6589988 6589988 T C DNHD1 Missense_Mutation p.V4252A 0.46 benign(0.001) TCGA-AA-3492-01 11 65978665 65978665 C T PACS1 Missense_Mutation p.R199C 0.48 tolerated(0.12) probably_damaging(0.996) TCGA-AA-3492-01 11 66033565 66033565 A C KLC2 Missense_Mutation p.D535A 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.589) TCGA-AA-3492-01 11 66034372 66034372 G A KLC2 Missense_Mutation p.R605H 0.35 deleterious_low_confidence(0) unknown(0) TCGA-AA-3492-01 11 66055683 66055683 C T YIF1A Missense_Mutation p.G38R 0.46 deleterious(0.03) benign(0.082) TCGA-AA-3492-01 11 66188592 66188592 C T NPAS4 5'UTR 0.29 TCGA-AA-3492-01 11 66326762 66326762 G A CTSF 3'Flank 0.17 TCGA-AA-3492-01 11 66359721 66359721 G T CCDC87 Missense_Mutation p.P256T 0.11 deleterious(0) possibly_damaging(0.784) TCGA-AA-3492-01 11 6644614 6644615 - T DCHS1 Frame_Shift_Ins p.G2765Rfs*10 0.19 TCGA-AA-3492-01 11 66458926 66458926 G A SPTBN2 Silent p.A1798A 0.31 TCGA-AA-3492-01 11 66627493 66627493 C T LRFN4 Missense_Mutation p.R579W 0.45 deleterious(0.03) benign(0.428) TCGA-AA-3492-01 11 67017996 67017996 C - KDM2A Frame_Shift_Del p.R834Vfs*3 0.41 TCGA-AA-3492-01 11 67051736 67051736 C T ADRBK1 Missense_Mutation p.R516W 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 11 67205096 67205096 C T PTPRCAP 5'UTR 0.35 TCGA-AA-3492-01 11 67430823 67430823 A C ALDH3B2 Missense_Mutation p.F341V 0.48 deleterious(0.01) probably_damaging(1) TCGA-AA-3492-01 11 68183854 68183854 C T LRP5 Silent p.D962D 0.53 TCGA-AA-3492-01 11 70333400 70333400 C T SHANK2 Missense_Mutation p.V1001I 0.34 tolerated(0.12) benign(0.132) TCGA-AA-3492-01 11 71718403 71718403 G - NUMA1 Frame_Shift_Del p.K1766Rfs*2 0.27 TCGA-AA-3492-01 11 72552500 72552500 G A FCHSD2 Silent p.N685N 0.47 TCGA-AA-3492-01 11 73715623 73715623 C T UCP3 Silent p.L183L 0.47 TCGA-AA-3492-01 11 74880307 74880307 T C SLCO2B1 Missense_Mutation p.Y180H 0.35 tolerated(0.58) benign(0.004) TCGA-AA-3492-01 11 74977088 74977088 G A ARRB1 3'UTR 0.58 TCGA-AA-3492-01 11 76062148 76062148 C A PRKRIR Missense_Mutation p.K682N 0.38 deleterious(0) probably_damaging(0.992) TCGA-AA-3492-01 11 76062240 76062240 T C PRKRIR Missense_Mutation p.R652G 0.33 tolerated(0.09) benign(0.033) TCGA-AA-3492-01 11 76370749 76370749 T C LRRC32 Missense_Mutation p.I630V 0.44 tolerated(0.18) benign(0.004) TCGA-AA-3492-01 11 76750706 76750706 G A B3GNT6 Silent p.P37P 0.54 TCGA-AA-3492-01 11 76901847 76901847 G A MYO7A Missense_Mutation p.A1286T 0.49 tolerated(0.4) possibly_damaging(0.508) TCGA-AA-3492-01 11 77885013 77885013 T C KCTD21 Silent p.P196P 0.26 TCGA-AA-3492-01 11 804181 804181 T G PIDD Missense_Mutation p.S70R 0.37 deleterious(0.01) possibly_damaging(0.839) TCGA-AA-3492-01 11 82443569 82443569 G A FAM181B Silent p.R401R 0.10 TCGA-AA-3492-01 11 82644299 82644299 A G C11orf82 Missense_Mutation p.N640S 0.29 tolerated(1) benign(0) TCGA-AA-3492-01 11 83962330 83962330 C G DLG2 Missense_Mutation p.S175T 0.33 tolerated(0.07) probably_damaging(0.961) TCGA-AA-3492-01 11 85342821 85342822 - A TMEM126B Frame_Shift_Ins p.N60Kfs*3 0.33 TCGA-AA-3492-01 11 85396906 85396906 G A CCDC89 Missense_Mutation p.R90C 0.26 deleterious(0.05) probably_damaging(0.998) TCGA-AA-3492-01 11 85407249 85407249 C T SYTL2 Missense_Mutation p.G1217D 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 11 8642704 8642705 - G TRIM66 Frame_Shift_Ins p.A994Sfs*6 0.10 TCGA-AA-3492-01 11 86520280 86520280 T G PRSS23 3'UTR 0.45 TCGA-AA-3492-01 11 88258487 88258487 T G GRM5 Missense_Mutation p.T906P 0.36 tolerated_low_confidence(0.25) benign(0.001) TCGA-AA-3492-01 11 8941056 8941056 T - AKIP1 3'UTR 0.31 TCGA-AA-3492-01 11 92577884 92577884 G A FAT3 Missense_Mutation p.R3784H 0.35 benign(0.035) TCGA-AA-3492-01 11 94113414 94113414 G T GPR83 Silent p.G391G 0.22 TCGA-AA-3492-01 11 94134235 94134235 C T GPR83 Missense_Mutation p.R60H 0.53 deleterious(0.01) probably_damaging(0.953) TCGA-AA-3492-01 11 94134328 94134328 G A GPR83 Missense_Mutation p.A29V 0.44 tolerated_low_confidence(0.51) benign(0) TCGA-AA-3492-01 12 100564750 100564750 G A RP11-175P13.3 3'Flank 0.39 TCGA-AA-3492-01 12 101764927 101764927 C T UTP20 Missense_Mutation p.A2260V 0.50 tolerated(1) benign(0) TCGA-AA-3492-01 12 102023264 102023264 C A MYBPC1 Silent p.A52A 0.27 TCGA-AA-3492-01 12 102030492 102030492 T C MYBPC1 Silent p.G192G 0.12 TCGA-AA-3492-01 12 104100681 104100681 G T STAB2 Missense_Mutation p.G1370C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 12 104337539 104337539 G A HSP90B1 Silent p.Q638Q 0.50 TCGA-AA-3492-01 12 106633854 106633854 C T CKAP4 Missense_Mutation p.A253T 0.09 tolerated(0.07) probably_damaging(0.969) TCGA-AA-3492-01 12 107391733 107391733 C T CRY1 Missense_Mutation p.G417S 0.54 tolerated(0.13) benign(0.163) TCGA-AA-3492-01 12 10746410 10746410 G T KLRAP1 RNA 0.44 TCGA-AA-3492-01 12 108603985 108603985 C T WSCD2 Silent p.C195C 0.35 TCGA-AA-3492-01 12 109041150 109041150 T - CORO1C 3'UTR 0.25 TCGA-AA-3492-01 12 109522804 109522804 C T USP30 Silent p.G405G 0.15 TCGA-AA-3492-01 12 109678965 109678965 T A ACACB Missense_Mutation p.I1634N 0.26 deleterious(0) probably_damaging(0.991) TCGA-AA-3492-01 12 109723228 109723228 G A FOXN4 Missense_Mutation p.S261F 0.42 deleterious(0) probably_damaging(0.972) TCGA-AA-3492-01 12 109889397 109889397 T C KCTD10 3'UTR 0.38 TCGA-AA-3492-01 12 109999604 109999604 C A MMAB Silent p.S134S 0.40 TCGA-AA-3492-01 12 110643421 110643421 C T IFT81 Missense_Mutation p.R580C 0.14 deleterious(0) probably_damaging(0.959) TCGA-AA-3492-01 12 111760254 111760254 C T CUX2 Silent p.S932S 0.56 TCGA-AA-3492-01 12 111800918 111800918 A C FAM109A Missense_Mutation p.V118G 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 12 11183745 11183745 A G TAS2R31 Silent p.L64L 0.39 TCGA-AA-3492-01 12 111908538 111908538 T C ATXN2 Missense_Mutation p.M1003V 0.35 probably_damaging(0.956) TCGA-AA-3492-01 12 113306254 113306254 C T RPH3A Missense_Mutation p.A155V 0.41 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 12 114377881 114377881 C T RBM19 Missense_Mutation p.G608S 0.31 tolerated(1) benign(0.017) TCGA-AA-3492-01 12 115109641 115109641 C T TBX3 3'UTR 0.30 TCGA-AA-3492-01 12 117013723 117013723 C T MAP1LC3B2 5'UTR 0.45 TCGA-AA-3492-01 12 117187655 117187655 C T RNFT2 Silent p.S31S 0.17 TCGA-AA-3492-01 12 118671558 118671558 C A TAOK3 Missense_Mutation p.E188D 0.35 deleterious(0) possibly_damaging(0.821) TCGA-AA-3492-01 12 120530904 120530904 G - CCDC64 Frame_Shift_Del p.D556Mfs*57 0.22 TCGA-AA-3492-01 12 121134432 121134432 T C MLEC 3'UTR 0.44 TCGA-AA-3492-01 12 121858086 121858086 T C RNF34 Silent p.D226D 0.27 TCGA-AA-3492-01 12 122473266 122473266 C T BCL7A Silent p.D68D 0.27 TCGA-AA-3492-01 12 12251908 12251910 GAA - BCL2L14 In_Frame_Del p.E325del 0.15 TCGA-AA-3492-01 12 122622114 122622114 C T MLXIP Missense_Mutation p.P711S 0.40 tolerated(0.32) benign(0.009) TCGA-AA-3492-01 12 123003483 123003483 G A RSRC2 Nonsense_Mutation p.R101* 0.42 TCGA-AA-3492-01 12 123342721 123342721 G A HIP1R Missense_Mutation p.E630K 0.33 deleterious(0.01) possibly_damaging(0.866) TCGA-AA-3492-01 12 124498775 124498775 C T ZNF664 3'UTR 0.41 TCGA-AA-3492-01 12 124811981 124811981 C T NCOR2 Missense_Mutation p.R2386Q 0.59 probably_damaging(0.999) TCGA-AA-3492-01 12 124856705 124856705 C T NCOR2 Silent p.A890A 0.42 TCGA-AA-3492-01 12 125626804 125626804 G A AACS 3'UTR 0.33 TCGA-AA-3492-01 12 132402066 132402066 C - ULK1 Frame_Shift_Del p.Q767Rfs*57 0.36 TCGA-AA-3492-01 12 132426357 132426357 G A PUS1 Silent p.P355P 0.34 TCGA-AA-3492-01 12 132551942 132551942 C T EP400 Nonsense_Mutation p.Q2929* 0.43 TCGA-AA-3492-01 12 132834407 132834407 C T GALNT9 Silent p.S260S 0.55 TCGA-AA-3492-01 12 13715751 13715751 T C GRIN2B Missense_Mutation p.Y1474C 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3492-01 12 13761613 13761613 C T GRIN2B Missense_Mutation p.S645N 0.22 deleterious(0) probably_damaging(0.992) TCGA-AA-3492-01 12 14577802 14577802 A - ATF7IP Frame_Shift_Del p.N320Mfs*7 0.15 TCGA-AA-3492-01 12 1754992 1754992 A C WNT5B Missense_Mutation p.K218N 0.44 deleterious(0) probably_damaging(0.947) TCGA-AA-3492-01 12 2058403 2058403 C A DCP1B Missense_Mutation p.R541M 0.40 deleterious(0.02) benign(0.033) TCGA-AA-3492-01 12 21467593 21467593 A - SLCO1A2 Frame_Shift_Del p.F75Lfs*2 0.30 TCGA-AA-3492-01 12 21926343 21926343 G A KCNJ8 Missense_Mutation p.R70C 0.40 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 12 22401947 22401947 G A ST8SIA1 Missense_Mutation p.R193W 0.56 deleterious(0.02) possibly_damaging(0.809) TCGA-AA-3492-01 12 25002854 25002854 T G BCAT1 Missense_Mutation p.K192N 0.32 tolerated(0.08) possibly_damaging(0.507) TCGA-AA-3492-01 12 2595358 2595358 C T CACNA1C Silent p.Y282Y 0.31 TCGA-AA-3492-01 12 26809373 26809373 A G ITPR2 Silent p.D767D 0.38 TCGA-AA-3492-01 12 2717687 2717687 C T CACNA1C Missense_Mutation p.R1143C 0.44 deleterious(0) benign(0.412) TCGA-AA-3492-01 12 27627747 27627747 A G SMCO2 Missense_Mutation p.D88G 0.32 tolerated(0.32) benign(0.222) TCGA-AA-3492-01 12 27641449 27641449 G A SMCO2 Missense_Mutation p.G190D 0.52 tolerated(1) benign(0.002) TCGA-AA-3492-01 12 27950833 27950833 G A KLHL42 Missense_Mutation p.V418M 0.41 deleterious(0) probably_damaging(0.98) TCGA-AA-3492-01 12 28702121 28702121 A C CCDC91 3'UTR 0.45 TCGA-AA-3492-01 12 29627999 29627999 G T OVCH1 Missense_Mutation p.P532H 0.11 tolerated(0.12) possibly_damaging(0.794) TCGA-AA-3492-01 12 31116850 31116850 C T TSPAN11 Silent p.A58A 0.54 TCGA-AA-3492-01 12 319117 319117 A C SLC6A12 Silent p.P12P 0.45 TCGA-AA-3492-01 12 34179049 34179049 G A ALG10 Silent p.E207E 0.39 TCGA-AA-3492-01 12 39734034 39734034 T - KIF21A Frame_Shift_Del p.N748Ifs*9 0.24 TCGA-AA-3492-01 12 40158377 40158377 T C SLC2A13 Missense_Mutation p.I535M 0.38 deleterious(0.02) probably_damaging(0.926) TCGA-AA-3492-01 12 40671946 40671946 A - LRRK2 Frame_Shift_Del p.N710Mfs*2 0.33 TCGA-AA-3492-01 12 42745782 42745782 T G PPHLN1 Silent p.V56V 0.39 TCGA-AA-3492-01 12 43837616 43837616 T A ADAMTS20 Silent p.G756G 0.32 TCGA-AA-3492-01 12 44180582 44180582 T - IRAK4 3'UTR 0.33 TCGA-AA-3492-01 12 44913966 44913966 C T NELL2 Missense_Mutation p.C791Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 12 44914002 44914002 A T NELL2 Missense_Mutation p.V779D 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 12 46321423 46321423 C T SCAF11 Silent p.S687S 0.12 TCGA-AA-3492-01 12 4724954 4724954 C A AKAP3 Missense_Mutation p.G838V 0.42 deleterious(0.02) probably_damaging(1) TCGA-AA-3492-01 12 4835873 4835873 C T GALNT8 Silent p.G129G 0.37 TCGA-AA-3492-01 12 48579246 48579246 G - C12orf68 3'UTR 0.30 TCGA-AA-3492-01 12 49176656 49176656 C T ADCY6 Missense_Mutation p.A188T 0.44 tolerated(0.38) benign(0.001) TCGA-AA-3492-01 12 49312573 49312573 C T CCDC65 Nonsense_Mutation p.R305* 0.30 TCGA-AA-3492-01 12 49360201 49360201 T C WNT10B Missense_Mutation p.I283V 0.50 tolerated(0.88) benign(0.001) TCGA-AA-3492-01 12 49496938 49496938 A G LMBR1L Silent p.F189F 0.38 TCGA-AA-3492-01 12 49951503 49951503 G T KCNH3 Missense_Mutation p.D1007Y 0.17 deleterious_low_confidence(0.01) benign(0.002) TCGA-AA-3492-01 12 49981410 49981410 C T FAM186B Missense_Mutation p.R887Q 0.37 tolerated(0.06) benign(0.076) TCGA-AA-3492-01 12 50155501 50155503 TCT - TMBIM6 In_Frame_Del p.F269del 0.50 TCGA-AA-3492-01 12 50189855 50189855 C T NCKAP5L Silent p.E596E 0.38 TCGA-AA-3492-01 12 5021259 5021259 C T KCNA1 Missense_Mutation p.R239C 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 12 5022195 5022195 G T KCNA1 3'UTR 0.30 TCGA-AA-3492-01 12 50532371 50532371 G A CERS5 Silent p.C174C 0.34 TCGA-AA-3492-01 12 52283235 52283235 G A ANKRD33 Silent p.T202T 0.46 TCGA-AA-3492-01 12 52579219 52579219 C - KRT80 Frame_Shift_Del p.Q152Sfs*37 0.25 TCGA-AA-3492-01 12 52680171 52680171 C T KRT81 Silent p.A462A 0.35 TCGA-AA-3492-01 12 52841348 52841348 G A KRT6B Silent p.G478G 0.41 TCGA-AA-3492-01 12 52844251 52844251 G A KRT6B Missense_Mutation p.R232W 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 12 52865911 52865911 G A KRT6C Missense_Mutation p.R232W 0.16 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 12 52962041 52962041 G A KRT74 Missense_Mutation p.R423C 0.39 deleterious(0.03) benign(0.103) TCGA-AA-3492-01 12 53012018 53012018 C T KRT73 Silent p.S97S 0.36 TCGA-AA-3492-01 12 53170627 53170627 C - KRT76 Frame_Shift_Del p.G150Afs*9 0.33 TCGA-AA-3492-01 12 53858557 53858557 C - PCBP2 Frame_Shift_Del p.T202Kfs*26 0.22 TCGA-AA-3492-01 12 54423765 54423765 C - HOXC6 3'UTR 0.25 TCGA-AA-3492-01 12 54763871 54763871 C - ZNF385A 3'UTR 0.57 TCGA-AA-3492-01 12 54930791 54930791 C T NCKAP1L Missense_Mutation p.T1046M 0.55 deleterious(0) probably_damaging(0.953) TCGA-AA-3492-01 12 55714890 55714890 T C OR6C1 Silent p.S169S 0.25 TCGA-AA-3492-01 12 55945131 55945131 C A OR6C4 Missense_Mutation p.L41M 0.43 tolerated_low_confidence(0.06) possibly_damaging(0.499) TCGA-AA-3492-01 12 56142481 56142481 C T GDF11 Missense_Mutation p.P186L 0.38 deleterious(0.04) possibly_damaging(0.855) TCGA-AA-3492-01 12 56233350 56233350 T C MMP19 Silent p.P232P 0.29 TCGA-AA-3492-01 12 56361888 56361888 C T CDK2 Missense_Mutation p.H84Y 0.37 deleterious(0.02) benign(0.004) TCGA-AA-3492-01 12 56557512 56557512 C T SMARCC2 Silent p.P1202P 0.32 TCGA-AA-3492-01 12 56559113 56559113 G - SMARCC2 Frame_Shift_Del p.P1043Lfs*18 0.60 TCGA-AA-3492-01 12 56998977 56998977 G A BAZ2A Silent p.S878S 0.57 TCGA-AA-3492-01 12 57345935 57345935 G - RDH16 Frame_Shift_Del p.R278Vfs*17 0.22 TCGA-AA-3492-01 12 57389722 57389722 C T GPR182 Silent p.C243C 0.51 TCGA-AA-3492-01 12 57397096 57397096 C T ZBTB39 Missense_Mutation p.A536T 0.16 tolerated(0.26) benign(0.001) TCGA-AA-3492-01 12 57619200 57619200 G A NXPH4 Silent p.A199A 0.25 TCGA-AA-3492-01 12 57910683 57910683 C T DDIT3 Missense_Mutation p.R163Q 0.39 tolerated(0.33) probably_damaging(0.996) TCGA-AA-3492-01 12 57920075 57920075 C - MBD6 Frame_Shift_Del p.P443Qfs*44 0.14 TCGA-AA-3492-01 12 58204612 58204612 C A AVIL Missense_Mutation p.G182V 0.38 tolerated(0.47) benign(0.014) TCGA-AA-3492-01 12 60168503 60168503 C T SLC16A7 Nonsense_Mutation p.R143* 0.43 TCGA-AA-3492-01 12 6031910 6031910 C - ANO2 Frame_Shift_Del p.G24Afs*139 0.30 TCGA-AA-3492-01 12 6457085 6457085 C - SCNN1A Frame_Shift_Del p.G714Afs*40 0.33 TCGA-AA-3492-01 12 64895185 64895185 A G TBK1 3'UTR 0.34 TCGA-AA-3492-01 12 66610954 66610954 A - IRAK3 Frame_Shift_Del p.M200Cfs*26 0.30 TCGA-AA-3492-01 12 72278730 72278730 T C TBC1D15 Silent p.P161P 0.28 TCGA-AA-3492-01 12 72667179 72667179 T - TRHDE Frame_Shift_Del p.F209Sfs*9 0.36 TCGA-AA-3492-01 12 75441930 75441930 T C KCNC2 Intron 0.36 TCGA-AA-3492-01 12 75678851 75678851 A G CAPS2 Missense_Mutation p.S488P 0.51 deleterious(0.01) benign(0.16) TCGA-AA-3492-01 12 78604209 78604209 C T NAV3 Missense_Mutation p.A2335V 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 12 79679574 79679574 G A SYT1 Silent p.P58P 0.38 TCGA-AA-3492-01 12 81101630 81101630 C A MYF6 Nonsense_Mutation p.C44* 0.25 TCGA-AA-3492-01 12 81111105 81111105 C T MYF5 Missense_Mutation p.A88V 0.20 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 12 81532924 81532924 T C ACSS3 Silent p.V220V 0.36 TCGA-AA-3492-01 12 85450035 85450035 A - LRRIQ1 Frame_Shift_Del p.K490Nfs*28 0.37 TCGA-AA-3492-01 12 88513913 88513913 A G CEP290 Silent p.N500N 0.10 TCGA-AA-3492-01 12 88589502 88589502 A - TMTC3 3'UTR 0.26 TCGA-AA-3492-01 12 9004888 9004888 A G A2ML1 Missense_Mutation p.D849G 0.37 tolerated(0.14) benign(0.018) TCGA-AA-3492-01 12 9009778 9009778 C T A2ML1 Missense_Mutation p.A956V 0.34 deleterious(0.04) possibly_damaging(0.696) TCGA-AA-3492-01 12 9085827 9085827 G T PHC1 Missense_Mutation p.G592W 0.33 deleterious(0) unknown(0) TCGA-AA-3492-01 12 91348319 91348319 C A CCER1 Silent p.P67P 0.42 TCGA-AA-3492-01 12 9229940 9229940 A G A2M Splice_Site p.X1117_splice 0.48 TCGA-AA-3492-01 12 95228419 95228419 A G MIR492 3'Flank 0.25 TCGA-AA-3492-01 12 96181064 96181064 A G NTN4 Missense_Mutation p.C80R 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 12 96653587 96653587 C T ELK3 Missense_Mutation p.P361S 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3492-01 12 97303568 97303568 G A NEDD1 Missense_Mutation p.G18R 0.13 deleterious(0.01) possibly_damaging(0.775) TCGA-AA-3492-01 12 9840632 9840632 T C CLEC2D Missense_Mutation p.C103R 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 12 9847446 9847446 T C CLEC2D 3'UTR 0.24 TCGA-AA-3492-01 13 101184620 101184620 G A GGACT Missense_Mutation p.R76C 0.40 deleterious(0.03) benign(0.03) TCGA-AA-3492-01 13 102235597 102235597 C T ITGBL1 Silent p.H253H 0.38 TCGA-AA-3492-01 13 103443657 103443657 C T KDELC1 Missense_Mutation p.V266M 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 13 103459682 103459682 G C BIVM Missense_Mutation p.R22T 0.38 tolerated_low_confidence(0.26) benign(0.001) TCGA-AA-3492-01 13 103525686 103525686 C T ERCC5 Missense_Mutation p.A986V 0.39 tolerated(0.97) benign(0.005) TCGA-AA-3492-01 13 107196413 107196415 TTC - ARGLU1 In_Frame_Del p.E251del 0.36 TCGA-AA-3492-01 13 108518819 108518819 C T FAM155A Silent p.L42L 0.31 TCGA-AA-3492-01 13 108886082 108886082 A T ABHD13 3'UTR 0.27 TCGA-AA-3492-01 13 111158883 111158883 G A COL4A2 Missense_Mutation p.M1508I 0.10 unknown(0) TCGA-AA-3492-01 13 111340313 111340313 T C CARS2 Missense_Mutation p.Q149R 0.41 tolerated(0.16) benign(0.081) TCGA-AA-3492-01 13 111372096 111372096 C A ING1 Silent p.S362S 0.11 TCGA-AA-3492-01 13 113333859 113333859 G A C13orf35 Missense_Mutation p.A56T 0.50 tolerated_low_confidence(0.25) possibly_damaging(0.682) TCGA-AA-3492-01 13 113536153 113536153 C T ATP11A 3'UTR 0.37 TCGA-AA-3492-01 13 113732751 113732751 G A MCF2L Splice_Site p.X578_splice 0.15 TCGA-AA-3492-01 13 113783837 113783837 A G F10 Missense_Mutation p.M48V 0.40 tolerated(0.36) benign(0.002) TCGA-AA-3492-01 13 114265341 114265341 A C TFDP1 Missense_Mutation p.K15Q 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-AA-3492-01 13 114758011 114758011 C T RASA3 Missense_Mutation p.R732H 0.20 deleterious(0) probably_damaging(0.996) TCGA-AA-3492-01 13 115047555 115047555 C A UPF3A Silent p.R89R 0.33 TCGA-AA-3492-01 13 115057218 115057219 - G UPF3A Frame_Shift_Ins p.E267Rfs*4 0.14 TCGA-AA-3492-01 13 20716957 20716957 C T GJA3 Silent p.T157T 0.52 TCGA-AA-3492-01 13 21205247 21205247 T - IFT88 Intron 0.32 TCGA-AA-3492-01 13 21563217 21563217 G T LATS2 Silent p.G234G 0.40 TCGA-AA-3492-01 13 21999792 21999792 A G ZDHHC20 Silent p.N48N 0.40 TCGA-AA-3492-01 13 22077129 22077129 A - MICU2 Frame_Shift_Del p.F290Sfs*14 0.30 TCGA-AA-3492-01 13 25077850 25077850 T C PARP4 Missense_Mutation p.Q22R 0.46 deleterious(0.01) possibly_damaging(0.507) TCGA-AA-3492-01 13 25163444 25163444 A - RP11-556N21.1 RNA 0.32 TCGA-AA-3492-01 13 25268586 25268586 C T ATP12A Missense_Mutation p.A467V 0.30 tolerated(0.28) benign(0) TCGA-AA-3492-01 13 25274946 25274946 C T ATP12A Silent p.D595D 0.37 TCGA-AA-3492-01 13 27827940 27827940 A G RPL21 Silent p.R9R 0.09 TCGA-AA-3492-01 13 28840989 28840989 C T PAN3 Missense_Mutation p.P517S 0.25 tolerated(0.18) benign(0.312) TCGA-AA-3492-01 13 28854590 28854590 A G PAN3 Missense_Mutation p.D744G 0.36 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3492-01 13 29599047 29599047 G A MTUS2 Missense_Mutation p.R81H 0.35 tolerated(0.57) benign(0.001) TCGA-AA-3492-01 13 30054449 30054451 AGG - MTUS2 In_Frame_Del p.E1128del 0.44 TCGA-AA-3492-01 13 31719836 31719836 C T HSPH1 Missense_Mutation p.R483Q 0.33 deleterious(0) probably_damaging(0.955) TCGA-AA-3492-01 13 32366915 32366915 C T RXFP2 Silent p.S492S 0.39 TCGA-AA-3492-01 13 32367214 32367214 G T RXFP2 Missense_Mutation p.G592V 0.45 tolerated(0.39) benign(0.088) TCGA-AA-3492-01 13 32869530 32869530 G T FRY Missense_Mutation p.R2992M 0.62 tolerated_low_confidence(0.27) benign(0.01) TCGA-AA-3492-01 13 33250000 33250000 G A PDS5B Missense_Mutation p.R289H 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 13 36158080 36158080 C T NBEA Missense_Mutation p.R2361C 0.33 deleterious(0) probably_damaging(0.973) TCGA-AA-3492-01 13 36242544 36242544 G A NBEA Missense_Mutation p.G2880R 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 13 36871781 36871781 G A CCDC169 Missense_Mutation p.R26C 0.53 deleterious(0) possibly_damaging(0.57) TCGA-AA-3492-01 13 37600350 37600350 T C SUPT20H Missense_Mutation p.D401G 0.43 deleterious(0.04) benign(0.062) TCGA-AA-3492-01 13 39261475 39261475 C T FREM2 5'UTR 0.31 TCGA-AA-3492-01 13 39358827 39358827 T C FREM2 Silent p.D1967D 0.11 TCGA-AA-3492-01 13 39554262 39554262 T C STOML3 Intron 0.29 TCGA-AA-3492-01 13 41134359 41134359 T - FOXO1 Frame_Shift_Del p.K423Nfs*9 0.29 TCGA-AA-3492-01 13 41239867 41239868 - C FOXO1 Frame_Shift_Ins p.N162Qfs*39 0.44 TCGA-AA-3492-01 13 41654813 41654813 A C WBP4 Missense_Mutation p.D263A 0.42 tolerated(0.6) benign(0) TCGA-AA-3492-01 13 41705324 41767068 13:41705324-41767068 - KBTBD6 large deletion 0.28 TCGA-AA-3492-01 13 42044757 42044757 G T RGCC 3'UTR 0.43 TCGA-AA-3492-01 13 42457527 42457527 A - VWA8 Frame_Shift_Del p.L359* 0.22 TCGA-AA-3492-01 13 45911417 45911417 A G TPT1 3'UTR 0.39 TCGA-AA-3492-01 13 47315953 47315953 C T LRCH1 Silent p.I754I 0.40 TCGA-AA-3492-01 13 49760216 49760216 A G FNDC3A Silent p.S578S 0.41 TCGA-AA-3492-01 13 50591701 50591701 A G TRIM13 3'Flank 0.44 TCGA-AA-3492-01 13 52742086 52742086 A G MRPS31P5 RNA 0.36 TCGA-AA-3492-01 13 53029673 53029673 C - CKAP2 5'UTR 0.11 TCGA-AA-3492-01 13 53420475 53420475 C T PCDH8 Silent p.P699P 0.45 TCGA-AA-3492-01 13 61989219 61989219 G A PCDH20 Missense_Mutation p.R25C 0.50 tolerated_low_confidence(0.16) benign(0) TCGA-AA-3492-01 13 70456485 70456485 T C KLHL1 Missense_Mutation p.D386G 0.40 deleterious(0) probably_damaging(0.983) TCGA-AA-3492-01 13 70535568 70535568 A G KLHL1 Missense_Mutation p.L230P 0.47 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 13 77657196 77657196 G A MYCBP2 Silent p.S3631S 0.33 TCGA-AA-3492-01 13 77862314 77862314 G A MYCBP2 Silent p.P154P 0.37 TCGA-AA-3492-01 13 78317292 78317292 A - SLAIN1 Intron 0.29 TCGA-AA-3492-01 13 88329416 88329416 C T SLITRK5 Silent p.I591I 0.41 TCGA-AA-3492-01 13 92345775 92345775 G A GPC5 Silent p.L220L 0.43 TCGA-AA-3492-01 13 92380901 92380901 C T GPC5 Missense_Mutation p.T379M 0.52 deleterious(0.01) benign(0.393) TCGA-AA-3492-01 13 96508518 96508518 C T UGGT2 Missense_Mutation p.R1301H 0.33 tolerated(1) benign(0.001) TCGA-AA-3492-01 13 99481573 99481573 G A DOCK9 Silent p.G1628G 0.24 TCGA-AA-3492-01 13 99532813 99532813 G A DOCK9 Silent p.N953N 0.40 TCGA-AA-3492-01 14 100406345 100406345 G A EML1 Missense_Mutation p.G801R 0.45 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 14 101335451 101335451 G A MIR493 RNA 0.40 TCGA-AA-3492-01 14 101347818 101347818 T C RTL1 Missense_Mutation p.Q1103R 0.54 tolerated_low_confidence(0.63) benign(0) TCGA-AA-3492-01 14 101515057 101515057 T - MIR544A RNA 0.35 TCGA-AA-3492-01 14 101522590 101522590 G A MIR323B RNA 0.15 TCGA-AA-3492-01 14 102391600 102391600 C T PPP2R5C Silent p.D553D 0.46 TCGA-AA-3492-01 14 102446777 102446777 C T DYNC1H1 Missense_Mutation p.A284V 0.47 probably_damaging(0.949) TCGA-AA-3492-01 14 103576368 103576368 G A EXOC3L4 Silent p.R659R 0.39 TCGA-AA-3492-01 14 104431746 104431746 C T TDRD9 Missense_Mutation p.P166L 0.44 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 14 104552081 104552081 G A ASPG 5'UTR 0.25 TCGA-AA-3492-01 14 104638914 104638914 C T KIF26A Silent p.A443A 0.41 TCGA-AA-3492-01 14 105243089 105243089 G A AKT1 Missense_Mutation p.T65M 0.38 tolerated(0.07) probably_damaging(0.982) TCGA-AA-3492-01 14 105477984 105477984 A G CDCA4 Silent p.L95L 0.32 TCGA-AA-3492-01 14 105477985 105477985 G C CDCA4 Silent p.R94R 0.28 TCGA-AA-3492-01 14 105622156 105622156 C T JAG2 Missense_Mutation p.D216N 0.38 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 14 105716290 105716290 G A BTBD6 Missense_Mutation p.V247M 0.40 tolerated(0.23) probably_damaging(0.928) TCGA-AA-3492-01 14 105930438 105930438 G A MTA1 Silent p.A382A 0.41 TCGA-AA-3492-01 14 105964991 105964991 C T C14orf80 Missense_Mutation p.A330V 0.36 tolerated(0.34) benign(0.005) TCGA-AA-3492-01 14 105995755 105995755 C T TMEM121 Missense_Mutation p.P195L 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 14 106066320 106066320 T C IGHE 3'UTR 0.41 TCGA-AA-3492-01 14 106321888 106321888 A G IGHM Missense_Mutation p.F116L 0.47 tolerated(0.21) possibly_damaging(0.452) TCGA-AA-3492-01 14 19563232 19563232 T C POTEG Intron 0.53 TCGA-AA-3492-01 14 20248781 20248781 G T OR4M1 Missense_Mutation p.Q100H 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 14 20528577 20528577 C T OR4L1 Missense_Mutation p.A125V 0.37 deleterious(0.01) probably_damaging(1) TCGA-AA-3492-01 14 20925399 20925399 C A APEX1 Missense_Mutation p.A230D 0.27 deleterious(0) probably_damaging(0.982) TCGA-AA-3492-01 14 20943232 20943232 G A PNP Missense_Mutation p.R158H 0.42 deleterious(0.01) benign(0.404) TCGA-AA-3492-01 14 21863194 21863194 T G CHD8 Missense_Mutation p.Y1756S 0.42 deleterious(0.05) benign(0.236) TCGA-AA-3492-01 14 21991327 21991327 G A SALL2 Silent p.S845S 0.35 TCGA-AA-3492-01 14 23342648 23342648 A G LRP10 Missense_Mutation p.T70A 0.52 deleterious(0.01) benign(0.05) TCGA-AA-3492-01 14 23504085 23504085 C T PSMB5 Silent p.A2A 0.43 TCGA-AA-3492-01 14 23523759 23523759 A G CDH24 Missense_Mutation p.V247A 0.39 deleterious(0) probably_damaging(0.942) TCGA-AA-3492-01 14 23863351 23863351 G A MYH6 Missense_Mutation p.R871C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 14 23895227 23895227 C T MYH7 Missense_Mutation p.R703H 0.33 deleterious(0) probably_damaging(0.984) TCGA-AA-3492-01 14 24035686 24035686 A G AP1G2 Intron 0.35 TCGA-AA-3492-01 14 24839410 24839410 G A NFATC4 Missense_Mutation p.R332Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 14 29237330 29237330 C T FOXG1 Missense_Mutation p.A282V 0.19 deleterious(0.02) benign(0.251) TCGA-AA-3492-01 14 29237801 29237801 C T FOXG1 Missense_Mutation p.A439V 0.38 deleterious_low_confidence(0.01) benign(0.276) TCGA-AA-3492-01 14 31071311 31071311 T C G2E3 Silent p.P328P 0.46 TCGA-AA-3492-01 14 32328541 32328541 T C NUBPL 3'UTR 0.42 TCGA-AA-3492-01 14 32562895 32562895 G A ARHGAP5 Missense_Mutation p.R1007H 0.37 tolerated(0.66) benign(0.008) TCGA-AA-3492-01 14 38678853 38678853 G A SSTR1 Missense_Mutation p.A87T 0.41 tolerated(0.24) probably_damaging(0.989) TCGA-AA-3492-01 14 39782628 39782628 A G CTAGE5 Silent p.E431E 0.43 TCGA-AA-3492-01 14 45497476 45497476 A - FAM179B Frame_Shift_Del p.N1203Ifs*6 0.28 TCGA-AA-3492-01 14 50081139 50081139 T C LRR1 Silent p.G390G 0.35 TCGA-AA-3492-01 14 53244913 53244914 - T GNPNAT1 3'UTR 0.53 TCGA-AA-3492-01 14 53513330 53513330 T - DDHD1 3'UTR 0.62 TCGA-AA-3492-01 14 57269042 57269042 C T OTX2 Missense_Mutation p.R102H 0.42 deleterious(0.01) probably_damaging(0.909) TCGA-AA-3492-01 14 58036679 58036679 A T SLC35F4 Missense_Mutation p.L354H 0.34 deleterious(0) probably_damaging(0.935) TCGA-AA-3492-01 14 59946026 59946026 G A L3HYPDH Silent p.D184D 0.54 TCGA-AA-3492-01 14 59970840 59970840 A G JKAMP 3'UTR 0.56 TCGA-AA-3492-01 14 60212584 60212584 G A RTN1 Missense_Mutation p.T286M 0.43 deleterious(0) probably_damaging(0.99) TCGA-AA-3492-01 14 60591261 60591261 C T PCNXL4 Missense_Mutation p.A557V 0.49 tolerated(0.17) benign(0.004) TCGA-AA-3492-01 14 60752393 60752393 A G PPM1A Missense_Mutation p.K369E 0.38 tolerated(0.15) benign(0.028) TCGA-AA-3492-01 14 60976654 60976654 C T SIX6 Nonsense_Mutation p.R180* 0.37 TCGA-AA-3492-01 14 61115354 61115354 T G SIX1 Missense_Mutation p.K185T 0.43 tolerated(0.08) probably_damaging(0.98) TCGA-AA-3492-01 14 61439012 61439012 C A TRMT5 3'UTR 0.33 TCGA-AA-3492-01 14 64463837 64463837 T C SYNE2 Missense_Mutation p.M1038T 0.28 benign(0.001) TCGA-AA-3492-01 14 64596945 64596945 G T SYNE2 Missense_Mutation p.Q4773H 0.48 probably_damaging(0.91) TCGA-AA-3492-01 14 65007733 65007733 G A HSPA2 Missense_Mutation p.A56T 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3492-01 14 65032133 65032133 C T PPP1R36 Nonsense_Mutation p.R110* 0.34 TCGA-AA-3492-01 14 65245896 65245904 TTGCACAGT - SPTB In_Frame_Del p.T1512_Q1514del 0.39 TCGA-AA-3492-01 14 67854950 67854950 C T PLEK2 Missense_Mutation p.V309I 0.13 tolerated(0.1) possibly_damaging(0.622) TCGA-AA-3492-01 14 70512964 70512964 G A SLC8A3 Silent p.N828N 0.53 TCGA-AA-3492-01 14 71227755 71227755 C T MAP3K9 Missense_Mutation p.R322Q 0.12 deleterious(0) probably_damaging(0.988) TCGA-AA-3492-01 14 72196947 72196947 C T SIPA1L1 Missense_Mutation p.T1618M 0.45 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 14 73181140 73181140 C T DPF3 Missense_Mutation p.V199I 0.35 tolerated(0.07) benign(0.028) TCGA-AA-3492-01 14 74489745 74489745 A - CCDC176 Frame_Shift_Del p.S63Vfs*5 0.34 TCGA-AA-3492-01 14 74960491 74960491 G - ISCA2 Frame_Shift_Del p.S7Rfs*3 0.33 TCGA-AA-3492-01 14 74967607 74967607 G - LTBP2 Frame_Shift_Del p.H1816Tfs*32 0.36 TCGA-AA-3492-01 14 75321942 75321942 C T PROX2 Missense_Mutation p.A331T 0.45 tolerated(0.15) benign(0.003) TCGA-AA-3492-01 14 75515797 75515800 AGAA - MLH3 Frame_Shift_Del p.F187Lfs*2 0.36 TCGA-AA-3492-01 14 75618775 75618775 A G TMED10 Silent p.T99T 0.10 TCGA-AA-3492-01 14 76117768 76117768 A - C14orf1 3'UTR 0.92 TCGA-AA-3492-01 14 76349106 76349106 G A TTLL5 Missense_Mutation p.A1201T 0.37 tolerated_low_confidence(0.09) benign(0.018) TCGA-AA-3492-01 14 77491999 77491999 G - IRF2BPL Frame_Shift_Del p.L713Sfs*54 0.38 TCGA-AA-3492-01 14 77580263 77580263 G A CIPC Missense_Mutation p.A268T 0.09 tolerated(0.3) benign(0.04) TCGA-AA-3492-01 14 77734824 77734824 C A NGB Missense_Mutation p.K102N 0.41 tolerated(0.12) benign(0.031) TCGA-AA-3492-01 14 78390812 78390812 C A ADCK1 Missense_Mutation p.L291M 0.40 deleterious(0.05) probably_damaging(0.987) TCGA-AA-3492-01 14 81610186 81610186 T C TSHR Missense_Mutation p.V595A 0.36 deleterious(0) benign(0.138) TCGA-AA-3492-01 14 81964763 81964763 T C SEL1L Missense_Mutation p.N323D 0.47 tolerated(0.27) possibly_damaging(0.593) TCGA-AA-3492-01 14 86089474 86089474 C - FLRT2 Frame_Shift_Del p.L542Cfs*5 0.33 TCGA-AA-3492-01 14 86091775 86091775 A G FLRT2 3'UTR 0.42 TCGA-AA-3492-01 14 86091959 86091960 - G FLRT2 3'UTR 0.22 TCGA-AA-3492-01 14 91633853 91633853 A G C14orf159 Intron 0.29 TCGA-AA-3492-01 14 93684909 93684909 G A UBR7 Missense_Mutation p.R213Q 0.42 tolerated(0.58) benign(0.001) TCGA-AA-3492-01 14 93963615 93963615 G - UNC79 Frame_Shift_Del p.L119Cfs*25 0.25 TCGA-AA-3492-01 14 94152991 94152991 C T UNC79 Missense_Mutation p.T2160M 0.42 tolerated(0.05) probably_damaging(0.999) TCGA-AA-3492-01 14 94756361 94756361 G A SERPINA10 Silent p.C190C 0.16 TCGA-AA-3492-01 14 94914846 94914847 AG - SERPINA11 Frame_Shift_Del p.L89Wfs*5 0.34 TCGA-AA-3492-01 14 94914908 94914908 G A SERPINA11 Silent p.D68D 0.34 TCGA-AA-3492-01 14 95030302 95030302 C A SERPINA4 Silent p.A161A 0.12 TCGA-AA-3492-01 14 95669231 95669231 G - CLMN Frame_Shift_Del p.H819Mfs*29 0.24 TCGA-AA-3492-01 14 96807896 96807896 A T ATG2B Missense_Mutation p.L296H 0.40 deleterious(0) possibly_damaging(0.87) TCGA-AA-3492-01 14 97321676 97321676 A G VRK1 Missense_Mutation p.D231G 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 14 99183438 99183438 T C C14orf177 Missense_Mutation p.C69R 0.27 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-AA-3492-01 14 99641466 99641466 G A BCL11B Silent p.G569G 0.47 TCGA-AA-3492-01 15 101718750 101718750 C T CHSY1 Missense_Mutation p.A418T 0.12 tolerated(0.37) possibly_damaging(0.526) TCGA-AA-3492-01 15 102194734 102194734 T - TARSL2 3'UTR 0.31 TCGA-AA-3492-01 15 22473173 22473173 G T IGHV4OR15-8 Missense_Mutation p.P33H 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 15 22742670 22742670 G A GOLGA6L1 Missense_Mutation p.R352Q 0.19 unknown(0) TCGA-AA-3492-01 15 22945047 22945047 C T CYFIP1 Missense_Mutation p.T373M 0.52 tolerated(0.07) possibly_damaging(0.528) TCGA-AA-3492-01 15 23200290 23200290 T C WHAMMP3 RNA 0.43 TCGA-AA-3492-01 15 23811404 23811405 - C MKRN3 Frame_Shift_Ins p.A162Gfs*15 0.45 TCGA-AA-3492-01 15 23890560 23890560 G T MAGEL2 Missense_Mutation p.P174H 0.40 deleterious(0) possibly_damaging(0.819) TCGA-AA-3492-01 15 24927978 24927978 T C NPAP1 3'UTR 0.43 TCGA-AA-3492-01 15 28000338 28000338 C T OCA2 3'UTR 0.50 TCGA-AA-3492-01 15 28277285 28277285 C T OCA2 Missense_Mutation p.M84I 0.36 tolerated_low_confidence(0.32) benign(0) TCGA-AA-3492-01 15 28474407 28474407 A G HERC2 Missense_Mutation p.Y1736H 0.43 possibly_damaging(0.804) TCGA-AA-3492-01 15 28502274 28502274 G A HERC2 Missense_Mutation p.A817V 0.39 benign(0.033) TCGA-AA-3492-01 15 29346522 29346522 G A APBA2 Silent p.A145A 0.44 TCGA-AA-3492-01 15 30012907 30012907 A G TJP1 Silent p.D806D 0.48 TCGA-AA-3492-01 15 30026546 30026546 G A TJP1 Missense_Mutation p.A483V 0.41 deleterious(0) probably_damaging(0.982) TCGA-AA-3492-01 15 31233725 31233725 A - MTMR10 Frame_Shift_Del p.L761* 0.27 TCGA-AA-3492-01 15 34376429 34376429 G A EMC7 3'UTR 0.39 TCGA-AA-3492-01 15 35044682 35044682 C T GJD2 Silent p.V321V 0.39 TCGA-AA-3492-01 15 35084465 35084465 G A ACTC1 Missense_Mutation p.R212C 0.32 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-AA-3492-01 15 37184448 37184448 C T MEIS2 Missense_Mutation p.A454T 0.36 deleterious_low_confidence(0.01) benign(0.02) TCGA-AA-3492-01 15 40631782 40631782 C - C15orf52 Frame_Shift_Del p.M99Wfs*3 0.34 TCGA-AA-3492-01 15 40648424 40648424 C - PHGR1 Frame_Shift_Del p.H59Tfs*49 0.17 TCGA-AA-3492-01 15 40661604 40661604 C T DISP2 Silent p.C1097C 0.36 TCGA-AA-3492-01 15 40685665 40685665 T C KNSTRN Intron 0.32 TCGA-AA-3492-01 15 40757534 40757534 C T BAHD1 Missense_Mutation p.P685S 0.32 tolerated(0.35) benign(0.002) TCGA-AA-3492-01 15 41043634 41043634 T C RMDN3 Missense_Mutation p.S172G 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 15 42042482 42042483 - A MGA Frame_Shift_Ins p.S2228Kfs*5 0.19 TCGA-AA-3492-01 15 42138968 42138968 C T PLA2G4B Silent p.L859L 0.17 TCGA-AA-3492-01 15 42245986 42245986 C T EHD4 Missense_Mutation p.R130H 0.37 tolerated(0.12) possibly_damaging(0.616) TCGA-AA-3492-01 15 43819979 43819979 A G MAP1A Missense_Mutation p.D2103G 0.48 probably_damaging(0.999) TCGA-AA-3492-01 15 44055385 44055385 G A PDIA3 Missense_Mutation p.E195K 0.32 tolerated(1) benign(0.001) TCGA-AA-3492-01 15 44811371 44811371 C T CTDSPL2 Missense_Mutation p.R373W 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 15 44829342 44829342 G A EIF3J 5'UTR 0.32 TCGA-AA-3492-01 15 45399634 45399634 G A DUOX2 Silent p.D534D 0.32 TCGA-AA-3492-01 15 45974685 45974685 C A SQRDL Missense_Mutation p.L292I 0.55 tolerated(0.27) probably_damaging(0.951) TCGA-AA-3492-01 15 48056164 48056164 G T SEMA6D Missense_Mutation p.D289Y 0.55 deleterious(0) possibly_damaging(0.869) TCGA-AA-3492-01 15 48495369 48495369 C T CTXN2 3'UTR 0.38 TCGA-AA-3492-01 15 48738947 48738947 C T FBN1 Missense_Mutation p.R1915H 0.54 benign(0.007) TCGA-AA-3492-01 15 49627656 49627656 C T FAM227B Missense_Mutation p.A437T 0.41 tolerated(0.23) benign(0.064) TCGA-AA-3492-01 15 50171584 50171584 T A ATP8B4 Missense_Mutation p.I924F 0.31 deleterious(0.03) benign(0.002) TCGA-AA-3492-01 15 52515775 52515775 C T MYO5C Missense_Mutation p.R1198H 0.40 tolerated(0.08) benign(0.006) TCGA-AA-3492-01 15 52662462 52662462 T G MYO5A Missense_Mutation p.E990D 0.37 tolerated(0.16) benign(0.02) TCGA-AA-3492-01 15 56152628 56152628 C T NEDD4 Missense_Mutation p.V660M 0.44 tolerated(0.14) benign(0.015) TCGA-AA-3492-01 15 56386181 56386181 T - RFX7 Frame_Shift_Del p.I1249* 0.28 TCGA-AA-3492-01 15 57731767 57731767 G A CGNL1 Missense_Mutation p.V524M 0.41 tolerated(0.14) benign(0.029) TCGA-AA-3492-01 15 58357787 58357787 G A ALDH1A2 Missense_Mutation p.A21V 0.46 tolerated_low_confidence(0.07) possibly_damaging(0.819) TCGA-AA-3492-01 15 58840566 58840566 G A LIPC Silent p.S282S 0.40 TCGA-AA-3492-01 15 59189386 59189386 A G SLTM Silent p.N385N 0.33 TCGA-AA-3492-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.29 TCGA-AA-3492-01 15 60656651 60656651 C T ANXA2 Missense_Mutation p.A92T 0.37 tolerated(0.19) benign(0.017) TCGA-AA-3492-01 15 62237993 62237993 G A VPS13C Missense_Mutation p.S1690F 0.40 deleterious(0) possibly_damaging(0.895) TCGA-AA-3492-01 15 63889654 63889656 CTC - FBXL22 In_Frame_Del p.S22del 0.38 TCGA-AA-3492-01 15 63915925 63915925 T C HERC1 Missense_Mutation p.Q4537R 0.29 probably_damaging(0.994) TCGA-AA-3492-01 15 64792276 64792276 G - ZNF609 Frame_Shift_Del p.A221Qfs*22 0.31 TCGA-AA-3492-01 15 65687456 65687456 C T IGDCC4 Missense_Mutation p.A518T 0.35 deleterious(0.03) benign(0.005) TCGA-AA-3492-01 15 65942956 65942956 T C SLC24A1 Silent p.G823G 0.34 TCGA-AA-3492-01 15 66249972 66249972 G A MEGF11 Silent p.G400G 0.10 TCGA-AA-3492-01 15 66735628 66735628 C T MAP2K1 Missense_Mutation p.S150F 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 15 68118432 68118432 C T SKOR1 Missense_Mutation p.S275L 0.36 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-AA-3492-01 15 68937661 68937661 G A CORO2B Missense_Mutation p.A60T 0.38 deleterious(0.05) possibly_damaging(0.615) TCGA-AA-3492-01 15 70960663 70960663 A G UACA Missense_Mutation p.L787P 0.40 tolerated(0.25) benign(0.102) TCGA-AA-3492-01 15 71124618 71124618 T C LARP6 Missense_Mutation p.M417V 0.38 tolerated(0.6) benign(0) TCGA-AA-3492-01 15 71403402 71403402 G A CT62 3'UTR 0.45 TCGA-AA-3492-01 15 73045163 73045163 C T ADPGK Missense_Mutation p.G337E 0.32 deleterious(0) probably_damaging(0.935) TCGA-AA-3492-01 15 74032351 74032351 C T C15orf59 Silent p.T263T 0.09 TCGA-AA-3492-01 15 74425859 74425859 C T ISLR2 Missense_Mutation p.A255V 0.14 tolerated(0.19) benign(0.003) TCGA-AA-3492-01 15 74636323 74636323 G A CYP11A1 Silent p.N212N 0.28 TCGA-AA-3492-01 15 74921011 74921011 A G CLK3 Missense_Mutation p.I546V 0.44 tolerated(0.14) benign(0.135) TCGA-AA-3492-01 15 75942736 75942736 C - SNX33 Frame_Shift_Del p.C435Afs*62 0.27 TCGA-AA-3492-01 15 75969251 75969251 T C CSPG4 Missense_Mutation p.Y1870C 0.42 deleterious(0) probably_damaging(0.928) TCGA-AA-3492-01 15 76958006 76958006 C T SCAPER Missense_Mutation p.R878Q 0.37 deleterious(0) probably_damaging(0.976) TCGA-AA-3492-01 15 77025617 77025617 G A SCAPER Missense_Mutation p.R659C 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 15 77906371 77906371 C - LINGO1 3'UTR 0.33 TCGA-AA-3492-01 15 80137689 80137689 G A ST20-MTHFS Missense_Mutation p.R135C 0.41 deleterious(0) benign(0.283) TCGA-AA-3492-01 15 81216992 81216992 A G KIAA1199 Missense_Mutation p.T745A 0.41 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 15 81627240 81627240 C T TMC3 Silent p.A760A 0.34 TCGA-AA-3492-01 15 83334306 83334306 C T AP3B2 Missense_Mutation p.G625D 0.35 deleterious(0) probably_damaging(0.927) TCGA-AA-3492-01 15 83832765 83832765 A - HDGFRP3 Frame_Shift_Del p.F49Lfs*9 0.25 TCGA-AA-3492-01 15 84442313 84442313 C T ADAMTSL3 Silent p.G76G 0.44 TCGA-AA-3492-01 15 84694029 84694029 C T ADAMTSL3 Silent p.C1499C 0.40 TCGA-AA-3492-01 15 85165638 85165638 T C ZSCAN2 3'UTR 0.46 TCGA-AA-3492-01 15 89382106 89382106 C T ACAN Missense_Mutation p.R95W 0.33 deleterious(0) unknown(0) TCGA-AA-3492-01 15 89388775 89388776 - G ACAN Frame_Shift_Ins p.E367* 0.37 TCGA-AA-3492-01 15 89424653 89424653 C T HAPLN3 Missense_Mutation p.R143H 0.47 deleterious(0.02) probably_damaging(0.973) TCGA-AA-3492-01 15 89760537 89760537 C T RLBP1 Missense_Mutation p.E54K 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 15 89864053 89864053 C T POLG Silent p.Q975Q 0.35 TCGA-AA-3492-01 15 90168262 90168262 G A TICRR Missense_Mutation p.R1574Q 0.40 deleterious(0.02) benign(0.424) TCGA-AA-3492-01 15 90785068 90785068 C T GDPGP1 Nonsense_Mutation p.R310* 0.42 TCGA-AA-3492-01 15 91424619 91424619 C T FURIN Silent p.D632D 0.43 TCGA-AA-3492-01 15 91424646 91424646 C T FURIN Silent p.C641C 0.38 TCGA-AA-3492-01 15 91430452 91430452 C T FES Missense_Mutation p.R174C 0.44 deleterious(0) possibly_damaging(0.684) TCGA-AA-3492-01 15 91436971 91436971 G A FES Silent p.G711G 0.45 TCGA-AA-3492-01 15 91542159 91542159 T C VPS33B 3'UTR 0.22 TCGA-AA-3492-01 15 92459286 92459286 G A SLCO3A1 Missense_Mutation p.A82T 0.38 deleterious(0.01) probably_damaging(0.979) TCGA-AA-3492-01 15 92706349 92706349 T C SLCO3A1 Missense_Mutation p.M706T 0.32 deleterious_low_confidence(0) benign(0.104) TCGA-AA-3492-01 15 93007562 93007562 C T ST8SIA2 Missense_Mutation p.H359Y 0.50 probably_damaging(1) TCGA-AA-3492-01 15 93547949 93547951 GAT - CHD2 In_Frame_Del p.D1463del 0.50 TCGA-AA-3492-01 16 10274122 10274122 G A GRIN2A Silent p.R49R 0.52 TCGA-AA-3492-01 16 1034901 1034901 G A SOX8 Missense_Mutation p.D286N 0.21 deleterious(0) probably_damaging(0.932) TCGA-AA-3492-01 16 10788469 10788469 G A TEKT5 Missense_Mutation p.R88C 0.09 deleterious(0.04) possibly_damaging(0.787) TCGA-AA-3492-01 16 11650342 11650342 G - LITAF Intron 0.13 TCGA-AA-3492-01 16 12060143 12060144 - T TNFRSF17 Frame_Shift_Ins p.L76Ffs*8 0.27 TCGA-AA-3492-01 16 1279914 1279914 C T TPSB2 Silent p.A13A 0.45 TCGA-AA-3492-01 16 1388918 1388918 C T BAIAP3 Silent p.G84G 0.56 TCGA-AA-3492-01 16 1412648 1412648 G A GNPTG Missense_Mutation p.A216T 0.48 deleterious(0) possibly_damaging(0.881) TCGA-AA-3492-01 16 1476346 1476346 C T C16orf91 Missense_Mutation p.A93T 0.12 tolerated_low_confidence(0.2) benign(0.011) TCGA-AA-3492-01 16 14989629 14989629 A G NOMO1 3'UTR 0.24 TCGA-AA-3492-01 16 15489966 15489966 A T MPV17L Missense_Mutation p.E71V 0.38 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 16 16243942 16243942 G A ABCC6 3'UTR 0.31 TCGA-AA-3492-01 16 16367731 16367731 G A NOMO3 Missense_Mutation p.G747D 0.23 tolerated(0.12) probably_damaging(0.911) TCGA-AA-3492-01 16 17221576 17221576 C A XYLT1 Missense_Mutation p.V724F 0.61 tolerated(0.7) benign(0.033) TCGA-AA-3492-01 16 1823715 1823715 A C EME2 Missense_Mutation p.E86A 0.41 deleterious(0) probably_damaging(0.909) TCGA-AA-3492-01 16 1837741 1837741 C T NUBP2 Missense_Mutation p.T133M 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 16 18532120 18532120 C T NOMO2 Missense_Mutation p.G747D 0.15 tolerated(0.09) benign(0.232) TCGA-AA-3492-01 16 18882743 18882743 C T SMG1 Missense_Mutation p.A749T 0.37 tolerated(0.42) benign(0.001) TCGA-AA-3492-01 16 19130335 19130336 - A ITPRIPL2 3'UTR 0.30 TCGA-AA-3492-01 16 19451479 19451479 G A TMC5 Missense_Mutation p.G40D 0.37 tolerated_low_confidence(0.12) benign(0.004) TCGA-AA-3492-01 16 19556498 19556498 G A CCP110 Missense_Mutation p.R890Q 0.44 deleterious(0) probably_damaging(0.979) TCGA-AA-3492-01 16 19729519 19729519 T C IQCK 5'UTR 0.58 TCGA-AA-3492-01 16 1995609 1995609 A G RPL3L Missense_Mutation p.V353A 0.42 tolerated(0.36) benign(0.022) TCGA-AA-3492-01 16 2017280 2017280 C A RNF151 Silent p.G3G 0.29 TCGA-AA-3492-01 16 20492256 20492256 C T ACSM2A Intron 0.36 TCGA-AA-3492-01 16 20809500 20809500 G T ERI2 Missense_Mutation p.A541D 0.36 tolerated(0.09) benign(0.235) TCGA-AA-3492-01 16 2096334 2096334 G A NTHL1 Missense_Mutation p.P58L 0.41 tolerated(0.25) benign(0.03) TCGA-AA-3492-01 16 21190856 21190856 C T TMEM159 Silent p.F155F 0.27 TCGA-AA-3492-01 16 21222651 21222651 T C ZP2 Missense_Mutation p.Q43R 0.17 tolerated(0.06) benign(0.215) TCGA-AA-3492-01 16 2122324 2122324 C A TSC2 Missense_Mutation p.P727H 0.28 tolerated(0.31) benign(0.069) TCGA-AA-3492-01 16 2158633 2158633 C T PKD1 Missense_Mutation p.V2179I 0.40 benign(0.053) TCGA-AA-3492-01 16 22337510 22337510 C - POLR3E Frame_Shift_Del p.G595Afs*51 0.29 TCGA-AA-3492-01 16 2260588 2260588 G C BRICD5 Missense_Mutation p.L39V 0.47 tolerated(0.24) benign(0.115) TCGA-AA-3492-01 16 227096 227096 C T HBA1 Silent p.H88H 0.28 TCGA-AA-3492-01 16 2283540 2283541 - G E4F1 Frame_Shift_Ins p.E388Gfs*55 0.42 TCGA-AA-3492-01 16 2288446 2288446 C A DNASE1L2 3'UTR 0.36 TCGA-AA-3492-01 16 23698823 23698823 A - PLK1 Frame_Shift_Del p.E359Kfs*96 0.29 TCGA-AA-3492-01 16 23700975 23700975 G A PLK1 Missense_Mutation p.S529N 0.37 deleterious(0) benign(0.265) TCGA-AA-3492-01 16 23722261 23722262 CT - ERN2 Frame_Shift_Del p.D107Pfs*8 0.35 TCGA-AA-3492-01 16 239925 239925 C A LUC7L Intron 0.40 TCGA-AA-3492-01 16 24366270 24366270 G A CACNG3 Missense_Mutation p.A138T 0.46 deleterious(0.02) possibly_damaging(0.698) TCGA-AA-3492-01 16 24800755 24800756 AG - TNRC6A Frame_Shift_Del p.R266Kfs*13 0.38 TCGA-AA-3492-01 16 25251363 25251363 T G ZKSCAN2 Missense_Mutation p.E893A 0.39 deleterious(0.03) possibly_damaging(0.832) TCGA-AA-3492-01 16 2579038 2579038 C T AMDHD2 Silent p.P391P 0.67 TCGA-AA-3492-01 16 27374719 27374719 G - IL4R Frame_Shift_Del p.E684Kfs*3 0.52 TCGA-AA-3492-01 16 27441417 27441417 T A IL21R Missense_Mutation p.L9M 0.34 deleterious(0.03) possibly_damaging(0.804) TCGA-AA-3492-01 16 27459715 27459715 G T IL21R Intron 0.47 TCGA-AA-3492-01 16 2749901 2749901 G A KCTD5 Missense_Mutation p.G178D 0.38 deleterious(0) probably_damaging(0.926) TCGA-AA-3492-01 16 27802598 27802598 G T GSG1L 3'UTR 0.31 TCGA-AA-3492-01 16 2816874 2816874 C T SRRM2 Silent p.S2115S 0.34 TCGA-AA-3492-01 16 28181150 28181150 C A XPO6 Missense_Mutation p.E162D 0.29 tolerated(0.12) possibly_damaging(0.593) TCGA-AA-3492-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.28 TCGA-AA-3492-01 16 28878124 28878124 G - SH2B1 Frame_Shift_Del p.G238Afs*3 0.15 TCGA-AA-3492-01 16 29680441 29680441 A - SPN 3'UTR 0.25 TCGA-AA-3492-01 16 29756000 29756000 G A C16orf54 Silent p.R91R 0.42 TCGA-AA-3492-01 16 30002771 30002772 - G TAOK2 3'Flank 0.36 TCGA-AA-3492-01 16 30103947 30103947 G T YPEL3 3'UTR 0.38 TCGA-AA-3492-01 16 3021762 3021762 T C PAQR4 Missense_Mutation p.L212P 0.34 deleterious(0) probably_damaging(0.99) TCGA-AA-3492-01 16 30376900 30376900 G A TBC1D10B Silent p.P324P 0.30 TCGA-AA-3492-01 16 30734951 30734951 C T SRCAP Silent p.H1402H 0.07 TCGA-AA-3492-01 16 3100437 3100437 C A MMP25 Missense_Mutation p.P184H 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 16 31092997 31092997 G T ZNF646 Missense_Mutation p.Q1784H 0.46 deleterious(0.04) probably_damaging(0.987) TCGA-AA-3492-01 16 31120867 31120867 C T BCKDK Silent p.Y77Y 0.26 TCGA-AA-3492-01 16 31196420 31196420 C T FUS Silent p.G228G 0.36 TCGA-AA-3492-01 16 31373986 31373986 C - ITGAX Frame_Shift_Del p.R426Afs*20 0.12 TCGA-AA-3492-01 16 31422411 31422411 C T ITGAD Silent p.F457F 0.45 TCGA-AA-3492-01 16 31446963 31446963 A - ZNF843 3'UTR 0.28 TCGA-AA-3492-01 16 31926539 31926539 A G ZNF267 Silent p.K323K 0.32 TCGA-AA-3492-01 16 3349337 3349337 T - TIGD7 Frame_Shift_Del p.K426Nfs*16 0.33 TCGA-AA-3492-01 16 347089 347089 T - AXIN1 Frame_Shift_Del p.K641Rfs*64 0.34 TCGA-AA-3492-01 16 396962 396962 G - AXIN1 Frame_Shift_Del p.R22Dfs*62 0.33 TCGA-AA-3492-01 16 4385387 4385387 G A GLIS2 Silent p.S256S 0.27 TCGA-AA-3492-01 16 4387072 4387072 G A GLIS2 Silent p.L374L 0.50 TCGA-AA-3492-01 16 4387073 4387073 G C GLIS2 Missense_Mutation p.A375P 0.56 tolerated(0.32) unknown(0) TCGA-AA-3492-01 16 4433411 4433411 C A VASN 3'UTR 0.20 TCGA-AA-3492-01 16 46638266 46638266 C T SHCBP1 Missense_Mutation p.S266N 0.42 tolerated(0.7) benign(0.01) TCGA-AA-3492-01 16 46741483 46741483 C T MYLK3 3'UTR 0.60 TCGA-AA-3492-01 16 47117434 47117434 G A NETO2 Missense_Mutation p.R426W 0.40 deleterious(0.03) benign(0.189) TCGA-AA-3492-01 16 47630338 47630338 A - PHKB Frame_Shift_Del p.N422Ifs*52 0.34 TCGA-AA-3492-01 16 48576682 48576682 T - N4BP1 3'UTR 0.33 TCGA-AA-3492-01 16 4949370 4949370 G A PPL Missense_Mutation p.R208W 0.56 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 16 54318975 54318975 G A IRX3 Missense_Mutation p.A273V 0.31 tolerated(0.18) possibly_damaging(0.499) TCGA-AA-3492-01 16 55539313 55539313 G A MMP2 Missense_Mutation p.V648M 0.31 tolerated(0.1) benign(0.228) TCGA-AA-3492-01 16 55854358 55854358 G A CES1 Missense_Mutation p.R243W 0.21 deleterious(0.02) possibly_damaging(0.56) TCGA-AA-3492-01 16 55855305 55855305 G A CES1 Missense_Mutation p.A223V 0.38 deleterious(0) possibly_damaging(0.597) TCGA-AA-3492-01 16 57075968 57075968 A G NLRC5 Missense_Mutation p.Q1035R 0.56 tolerated(0.18) benign(0.022) TCGA-AA-3492-01 16 57484954 57484954 G A COQ9 Missense_Mutation p.A26T 0.39 tolerated_low_confidence(0.61) benign(0.001) TCGA-AA-3492-01 16 57734141 57734141 G A CCDC135 Missense_Mutation p.D155N 0.41 tolerated(0.09) benign(0.249) TCGA-AA-3492-01 16 57790279 57790279 C T KATNB1 Missense_Mutation p.T577M 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 16 57918286 57918286 C T CNGB1 Missense_Mutation p.A1180T 0.40 tolerated(0.38) benign(0) TCGA-AA-3492-01 16 58287965 58287965 G A CCDC113 Missense_Mutation p.D98N 0.41 deleterious(0.02) possibly_damaging(0.705) TCGA-AA-3492-01 16 58585541 58585541 C T CNOT1 Silent p.T1051T 0.37 TCGA-AA-3492-01 16 58742062 58742062 C T GOT2 3'UTR 0.32 TCGA-AA-3492-01 16 613464 613464 A C C16orf11 Missense_Mutation p.K57T 0.47 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 16 613723 613723 T C C16orf11 Silent p.P143P 0.38 TCGA-AA-3492-01 16 640349 640349 G A RAB40C Missense_Mutation p.V20M 0.35 deleterious(0) benign(0.424) TCGA-AA-3492-01 16 67235919 67235919 G A ELMO3 Missense_Mutation p.G417S 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-AA-3492-01 16 67572425 67572425 G A FAM65A Missense_Mutation p.V46I 0.33 deleterious(0.01) probably_damaging(0.948) TCGA-AA-3492-01 16 67761322 67761322 G A RANBP10 Missense_Mutation p.A547V 0.10 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 16 67981289 67981289 C T SLC12A4 Missense_Mutation p.A675T 0.42 deleterious(0) probably_damaging(0.976) TCGA-AA-3492-01 16 70288539 70288539 G A AARS Silent p.I795I 0.11 TCGA-AA-3492-01 16 70582332 70582332 T C SF3B3 Silent p.R463R 0.23 TCGA-AA-3492-01 16 70902618 70902618 T G HYDIN Missense_Mutation p.K3722T 0.47 possibly_damaging(0.859) TCGA-AA-3492-01 16 71317736 71317736 A T CMTR2 Missense_Mutation p.N696K 0.38 tolerated(0.74) benign(0.034) TCGA-AA-3492-01 16 71488007 71488007 G A ZNF23 5'UTR 0.44 TCGA-AA-3492-01 16 71808493 71808493 C T AP1G1 Silent p.L68L 0.39 TCGA-AA-3492-01 16 72045978 72045978 G - DHODH Frame_Shift_Del p.G19Efs*10 0.33 TCGA-AA-3492-01 16 72048541 72048541 G A DHODH Missense_Mutation p.R135H 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 16 72829348 72829348 C T ZFHX3 Silent p.A2411A 0.45 TCGA-AA-3492-01 16 72830263 72830263 C T ZFHX3 Silent p.P2106P 0.47 TCGA-AA-3492-01 16 72832375 72832375 G A ZFHX3 Silent p.R1402R 0.40 TCGA-AA-3492-01 16 72991641 72991642 - T ZFHX3 Frame_Shift_Ins p.P802Tfs*9 0.23 TCGA-AA-3492-01 16 72993490 72993490 C T ZFHX3 Silent p.S185S 0.45 TCGA-AA-3492-01 16 74670433 74670433 G A RFWD3 Nonsense_Mutation p.Q413* 0.09 TCGA-AA-3492-01 16 75240034 75240034 C A CTRB2 Missense_Mutation p.G37V 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 16 75690558 75690558 A - TERF2IP 3'UTR 0.41 TCGA-AA-3492-01 16 76482813 76482813 C T CNTNAP4 Missense_Mutation p.R273W 0.37 tolerated(0.07) benign(0.001) TCGA-AA-3492-01 16 77775744 77775744 A - NUDT7 Frame_Shift_Del p.K207Nfs*14 0.38 TCGA-AA-3492-01 16 77822501 77822501 G A VAT1L 5'UTR 0.54 TCGA-AA-3492-01 16 79628410 79628410 C T MAF Missense_Mutation p.A387T 0.31 tolerated_low_confidence(0.16) benign(0.015) TCGA-AA-3492-01 16 80646612 80646612 C T CDYL2 Missense_Mutation p.A377T 0.36 deleterious(0.03) probably_damaging(1) TCGA-AA-3492-01 16 81058344 81058344 A G CENPN Missense_Mutation p.T220A 0.29 tolerated(0.4) benign(0.029) TCGA-AA-3492-01 16 81388171 81388171 C T GAN Silent p.H148H 0.41 TCGA-AA-3492-01 16 81712032 81712032 T A CMIP Missense_Mutation p.V396D 0.22 deleterious_low_confidence(0) benign(0.048) TCGA-AA-3492-01 16 81934352 81934353 - C PLCG2 Frame_Shift_Ins p.S445Qfs*12 0.28 TCGA-AA-3492-01 16 825519 825519 C A MSLNL Missense_Mutation p.E414D 0.42 benign(0.005) TCGA-AA-3492-01 16 84520581 84520581 T C TLDC1 Missense_Mutation p.H205R 0.42 tolerated(0.21) benign(0.005) TCGA-AA-3492-01 16 84695479 84695479 C T KLHL36 Missense_Mutation p.P531S 0.46 tolerated(0.07) possibly_damaging(0.822) TCGA-AA-3492-01 16 86613761 86613761 G A FOXL1 3'UTR 0.46 TCGA-AA-3492-01 16 87743222 87743222 C T KLHDC4 Missense_Mutation p.E366K 0.39 tolerated(0.52) benign(0.069) TCGA-AA-3492-01 16 88066785 88066785 C A BANP Missense_Mutation p.H370Q 0.46 deleterious_low_confidence(0.05) probably_damaging(0.995) TCGA-AA-3492-01 16 88504177 88504177 C T ZNF469 Silent p.F3405F 0.37 TCGA-AA-3492-01 16 88594554 88594554 C T ZFPM1 Missense_Mutation p.A207V 0.59 tolerated(0.5) benign(0.074) TCGA-AA-3492-01 16 88601255 88601255 C T ZFPM1 Silent p.G963G 0.23 TCGA-AA-3492-01 16 88799065 88799065 C T PIEZO1 Missense_Mutation p.A914T 0.21 tolerated(0.15) possibly_damaging(0.571) TCGA-AA-3492-01 16 89616972 89616972 C T SPG7 Silent p.H578H 0.31 TCGA-AA-3492-01 16 89712982 89712982 G A CHMP1A Silent p.A174A 0.48 TCGA-AA-3492-01 16 89936739 89936739 C T SPIRE2 3'UTR 0.29 TCGA-AA-3492-01 16 89973662 89973662 G A TCF25 Silent p.T577T 0.30 TCGA-AA-3492-01 16 90110917 90110917 T C GAS8 3'UTR 0.31 TCGA-AA-3492-01 16 9197094 9197094 C T C16orf72 Silent p.F187F 0.37 TCGA-AA-3492-01 17 10204898 10204898 G A MYH13 Silent p.D1930D 0.44 TCGA-AA-3492-01 17 10204903 10204903 G A MYH13 Nonsense_Mutation p.R1929* 0.24 TCGA-AA-3492-01 17 10222146 10222146 G A MYH13 Silent p.D1233D 0.32 TCGA-AA-3492-01 17 10419272 10419272 G T MYH1 Missense_Mutation p.S159Y 0.09 deleterious(0) probably_damaging(0.99) TCGA-AA-3492-01 17 11872764 11872764 G A DNAH9 Missense_Mutation p.V4461M 0.25 probably_damaging(0.978) TCGA-AA-3492-01 17 12011192 12011192 T C MAP2K4 Missense_Mutation p.I200T 0.42 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 12028670 12028670 G T MAP2K4 Missense_Mutation p.W291C 0.45 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 12569538 12569538 G T MYOCD Silent p.L11L 0.55 TCGA-AA-3492-01 17 12921103 12921103 G A ELAC2 Silent p.G54G 0.20 TCGA-AA-3492-01 17 13400052 13400052 C T HS3ST3A1 Missense_Mutation p.R228H 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 17 14110442 14110442 G A COX10 Missense_Mutation p.S415N 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 14139660 14139661 - CT CDRT15 Frame_Shift_Ins p.A117Efs*114 0.20 TCGA-AA-3492-01 17 14248428 14248428 G A HS3ST3B1 Missense_Mutation p.R213H 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 17 15162502 15162502 G A PMP22 Silent p.I29I 0.35 TCGA-AA-3492-01 17 15519091 15519091 A - RP11-385D13.1 Frame_Shift_Del p.S490Pfs*58 0.28 TCGA-AA-3492-01 17 16692223 16692223 G A CCDC144A Intron 0.33 TCGA-AA-3492-01 17 17380493 17380493 G A MED9 Silent p.S46S 0.33 TCGA-AA-3492-01 17 17699904 17699904 C T RAI1 Silent p.L1214L 0.38 TCGA-AA-3492-01 17 1792132 1792132 G A RPA1 Missense_Mutation p.R513H 0.43 deleterious(0) probably_damaging(0.961) TCGA-AA-3492-01 17 18023664 18023664 A G MYO15A Missense_Mutation p.E517G 0.41 benign(0.403) TCGA-AA-3492-01 17 18144975 18144975 C T LLGL1 Missense_Mutation p.R905W 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 18647518 18647518 C T FBXW10 5'UTR 0.56 TCGA-AA-3492-01 17 18925166 18925166 G A GRAP 3'UTR 0.50 TCGA-AA-3492-01 17 19750148 19750148 C A ULK2 Missense_Mutation p.S124I 0.43 tolerated(0.05) benign(0.184) TCGA-AA-3492-01 17 20108942 20108942 G A SPECC1 Missense_Mutation p.R527Q 0.27 tolerated(0.63) benign(0.02) TCGA-AA-3492-01 17 20224821 20224821 C T AC004702.2 Intron 0.38 TCGA-AA-3492-01 17 20358626 20358626 C T LGALS9B Missense_Mutation p.R177H 0.66 tolerated(0.26) benign(0.034) TCGA-AA-3492-01 17 2298369 2298369 C T MNT Silent p.P151P 0.09 TCGA-AA-3492-01 17 2324042 2324042 T - METTL16 Frame_Shift_Del p.I349Ffs*5 0.12 TCGA-AA-3492-01 17 25919605 25919605 G A KSR1 Missense_Mutation p.A281T 0.42 tolerated(0.51) benign(0.016) TCGA-AA-3492-01 17 25932770 25932770 C T KSR1 Missense_Mutation p.T527M 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 2593925 2593925 G A CLUH Missense_Mutation p.P1298L 0.17 tolerated_low_confidence(0.21) benign(0.005) TCGA-AA-3492-01 17 27014204 27014204 C T SUPT6H Silent p.S933S 0.53 TCGA-AA-3492-01 17 27041660 27041660 C A RAB34 3'UTR 0.51 TCGA-AA-3492-01 17 27818858 27818858 G A TAOK1 Missense_Mutation p.R269Q 0.53 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 27940469 27940469 C T ANKRD13B Missense_Mutation p.R584W 0.44 deleterious(0.01) possibly_damaging(0.545) TCGA-AA-3492-01 17 28435016 28435016 C T EFCAB5 Missense_Mutation p.P1496S 0.35 tolerated_low_confidence(0.11) benign(0.184) TCGA-AA-3492-01 17 2909300 2909300 G A RAP1GAP2 Missense_Mutation p.A442T 0.52 deleterious(0) probably_damaging(0.973) TCGA-AA-3492-01 17 29848290 29848290 G A RAB11FIP4 Missense_Mutation p.D224N 0.47 tolerated(0.06) probably_damaging(0.97) TCGA-AA-3492-01 17 30207721 30207721 G A UTP6 Nonsense_Mutation p.R280* 0.41 TCGA-AA-3492-01 17 3195464 3195464 C T OR3A1 Missense_Mutation p.R138H 0.36 tolerated(0.56) benign(0.012) TCGA-AA-3492-01 17 32956162 32956162 G A TMEM132E Missense_Mutation p.R336Q 0.40 tolerated(0.48) benign(0.325) TCGA-AA-3492-01 17 33680769 33680769 C - SLFN11 Frame_Shift_Del p.G503Afs*15 0.15 TCGA-AA-3492-01 17 33984665 33984665 T C AP2B1 Missense_Mutation p.L615P 0.40 tolerated(0.27) benign(0.056) TCGA-AA-3492-01 17 3436225 3436225 G A TRPV3 Missense_Mutation p.T264M 0.31 deleterious(0.02) probably_damaging(0.96) TCGA-AA-3492-01 17 3593915 3593915 C T P2RX5 Silent p.A140A 0.31 TCGA-AA-3492-01 17 35939407 35939407 G A SYNRG Intron 0.39 TCGA-AA-3492-01 17 36398224 36398224 C A RP11-1407O15.2 Missense_Mutation p.D112Y 0.23 TCGA-AA-3492-01 17 36412993 36412993 G A RP11-1407O15.2 Missense_Mutation p.A56V 0.41 TCGA-AA-3492-01 17 36872913 36872913 C T MLLT6 Missense_Mutation p.R444W 0.44 deleterious(0) unknown(0) TCGA-AA-3492-01 17 36876705 36876705 A - MLLT6 Frame_Shift_Del p.K747Rfs*45 0.27 TCGA-AA-3492-01 17 36936825 36936825 A G PIP4K2B Silent p.S129S 0.48 TCGA-AA-3492-01 17 37627694 37627694 C - CDK12 Frame_Shift_Del p.P538Lfs*72 0.26 TCGA-AA-3492-01 17 37673767 37673767 C T CDK12 Missense_Mutation p.P974L 0.27 probably_damaging(1) TCGA-AA-3492-01 17 37883769 37883769 C T ERBB2 Silent p.Y1127Y 0.37 TCGA-AA-3492-01 17 3819392 3819392 T C P2RX1 Missense_Mutation p.Y43C 0.13 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 3828691 3828691 G A ATP2A3 3'UTR 0.53 TCGA-AA-3492-01 17 38420837 38420837 G A WIPF2 Missense_Mutation p.D137N 0.17 tolerated(0.1) probably_damaging(0.939) TCGA-AA-3492-01 17 38652652 38652652 A G TNS4 Missense_Mutation p.L9P 0.39 deleterious(0) probably_damaging(0.966) TCGA-AA-3492-01 17 38854866 38854866 T C KRT24 Silent p.S466S 0.35 TCGA-AA-3492-01 17 39036501 39036501 G T KRT20 Missense_Mutation p.L215I 0.40 deleterious(0.03) probably_damaging(1) TCGA-AA-3492-01 17 39382988 39382988 A G KRTAP9-2 Missense_Mutation p.T28A 0.25 tolerated(0.1) unknown(0) TCGA-AA-3492-01 17 39406364 39406364 G A KRTAP9-4 Missense_Mutation p.R131H 0.35 tolerated(0.13) benign(0.145) TCGA-AA-3492-01 17 3967744 3967744 C T ZZEF1 Silent p.E1543E 0.12 TCGA-AA-3492-01 17 39724617 39724617 G T KRT9 Missense_Mutation p.S397R 0.38 deleterious(0) probably_damaging(0.958) TCGA-AA-3492-01 17 39981869 39981869 A G NT5C3B Missense_Mutation p.I270T 0.14 deleterious(0.02) probably_damaging(0.964) TCGA-AA-3492-01 17 40010761 40010761 C A KLHL11 Missense_Mutation p.G453V 0.37 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 17 40040521 40040521 C T ACLY Silent p.P693P 0.27 TCGA-AA-3492-01 17 40120711 40120711 T C CNP Missense_Mutation p.L210P 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3492-01 17 40180141 40180141 C T ZNF385C Missense_Mutation p.R365Q 0.46 tolerated(0.67) benign(0.066) TCGA-AA-3492-01 17 40269818 40269818 G A KAT2A Missense_Mutation p.L436F 0.38 tolerated(0.28) benign(0.013) TCGA-AA-3492-01 17 40328259 40328259 C - KCNH4 Frame_Shift_Del p.S215Lfs*62 0.37 TCGA-AA-3492-01 17 40696232 40696232 C T NAGLU Silent p.P736P 0.33 TCGA-AA-3492-01 17 40823035 40823035 G A PLEKHH3 Silent p.A466A 0.53 TCGA-AA-3492-01 17 40937417 40937417 G - WNK4 Frame_Shift_Del p.R467Afs*194 0.25 TCGA-AA-3492-01 17 41243809 41243809 C T BRCA1 Missense_Mutation p.V1247I 0.43 tolerated(0.54) benign(0.024) TCGA-AA-3492-01 17 42085978 42085978 A G NAGS 3'UTR 0.53 TCGA-AA-3492-01 17 42159966 42159966 A G HDAC5 Missense_Mutation p.L866P 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 17 42164942 42164942 C A HDAC5 Missense_Mutation p.E575D 0.47 tolerated(0.45) benign(0.009) TCGA-AA-3492-01 17 42225437 42225437 C A C17orf53 Missense_Mutation p.A89D 0.23 deleterious(0) possibly_damaging(0.804) TCGA-AA-3492-01 17 42232730 42232730 C T C17orf53 Missense_Mutation p.P575L 0.35 tolerated(0.11) benign(0.123) TCGA-AA-3492-01 17 42293941 42293942 AA - UBTF Frame_Shift_Del p.S64Wfs*13 0.32 TCGA-AA-3492-01 17 42386178 42386178 G A RUNDC3A 5'UTR 0.50 TCGA-AA-3492-01 17 42398479 42398479 C T SLC25A39 Missense_Mutation p.R213H 0.24 tolerated(0.25) probably_damaging(0.935) TCGA-AA-3492-01 17 42636191 42636191 G A FZD2 Missense_Mutation p.V379M 0.15 deleterious(0) probably_damaging(0.975) TCGA-AA-3492-01 17 43111704 43111704 T C DCAKD Missense_Mutation p.E56G 0.26 tolerated(0.1) benign(0.173) TCGA-AA-3492-01 17 43216507 43216507 A G ACBD4 Silent p.A269A 0.40 TCGA-AA-3492-01 17 43344492 43344492 G A MAP3K14-AS1 RNA 0.50 TCGA-AA-3492-01 17 44060773 44060773 G A MAPT Silent p.P201P 0.45 TCGA-AA-3492-01 17 44110796 44110796 C A KANSL1 Missense_Mutation p.K899N 0.53 tolerated(0.19) possibly_damaging(0.583) TCGA-AA-3492-01 17 44127954 44127954 C T KANSL1 Silent p.L655L 0.39 TCGA-AA-3492-01 17 4442644 4442644 A T MYBBP1A Intron 0.53 TCGA-AA-3492-01 17 45198268 45198268 C T CDC27 3'UTR 0.36 TCGA-AA-3492-01 17 45747197 45747197 C A KPNB1 Missense_Mutation p.L460I 0.39 deleterious(0) possibly_damaging(0.545) TCGA-AA-3492-01 17 46135675 46135675 T C NFE2L1 Missense_Mutation p.S331P 0.26 deleterious(0.02) benign(0.16) TCGA-AA-3492-01 17 4685905 4685905 C T TM4SF5 Silent p.G122G 0.51 TCGA-AA-3492-01 17 4686274 4686274 G T TM4SF5 Missense_Mutation p.G174V 0.36 tolerated(0.19) possibly_damaging(0.772) TCGA-AA-3492-01 17 4713072 4713072 C T PLD2 Missense_Mutation p.S234F 0.55 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 17 4717987 4717987 T C PLD2 Missense_Mutation p.I385T 0.49 tolerated(0.4) benign(0.001) TCGA-AA-3492-01 17 4719139 4719139 G - PLD2 Frame_Shift_Del p.G457Dfs*16 0.24 TCGA-AA-3492-01 17 47241502 47241502 C A B4GALNT2 Silent p.P333P 0.32 TCGA-AA-3492-01 17 47246130 47246130 G T B4GALNT2 Nonsense_Mutation p.G455* 0.36 TCGA-AA-3492-01 17 47302415 47302415 C T PHOSPHO1 Silent p.S24S 0.43 TCGA-AA-3492-01 17 48264021 48264021 C T COL1A1 Missense_Mutation p.C1265Y 0.32 benign(0.126) TCGA-AA-3492-01 17 48603399 48603399 G A MYCBPAP Missense_Mutation p.R690H 0.36 tolerated(0.4) benign(0.001) TCGA-AA-3492-01 17 4862986 4862986 G A SPAG7 Intron 0.47 TCGA-AA-3492-01 17 48683288 48683288 G T CACNA1G Missense_Mutation p.Q1442H 0.35 deleterious(0.05) possibly_damaging(0.877) TCGA-AA-3492-01 17 48697162 48697162 C A CACNA1G Missense_Mutation p.P1967H 0.36 tolerated(0.59) benign(0.281) TCGA-AA-3492-01 17 48774411 48774411 G A ANKRD40 Nonsense_Mutation p.R284* 0.40 TCGA-AA-3492-01 17 49067937 49067937 T A SPAG9 Missense_Mutation p.S831C 0.31 tolerated(0.06) possibly_damaging(0.827) TCGA-AA-3492-01 17 49280564 49280564 C A MBTD1 Missense_Mutation p.W255C 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 49284363 49284363 G A MBTD1 Missense_Mutation p.P164S 0.22 deleterious(0.05) benign(0.283) TCGA-AA-3492-01 17 49297796 49297796 G A MBTD1 Silent p.G61G 0.41 TCGA-AA-3492-01 17 49710970 49710970 C G CA10 Missense_Mutation p.Q277H 0.41 tolerated(0.36) possibly_damaging(0.701) TCGA-AA-3492-01 17 51902014 51902014 A - KIF2B Frame_Shift_Del p.K542Nfs*2 0.29 TCGA-AA-3492-01 17 53156094 53156094 A G STXBP4 Silent p.L451L 0.21 TCGA-AA-3492-01 17 5393715 5393715 A G MIS12 3'UTR 0.40 TCGA-AA-3492-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.29 TCGA-AA-3492-01 17 56570269 56570269 G A MTMR4 Silent p.G1085G 0.40 TCGA-AA-3492-01 17 56833439 56833439 C T PPM1E Silent p.G27G 0.62 TCGA-AA-3492-01 17 57697397 57697397 C - CLTC 5'UTR 0.88 TCGA-AA-3492-01 17 58299883 58299883 G A USP32 Nonsense_Mutation p.R546* 0.30 TCGA-AA-3492-01 17 58511582 58511582 C T C17orf64 3'Flank 0.35 TCGA-AA-3492-01 17 59479209 59479209 A G TBX2 Missense_Mutation p.Y187C 0.33 deleterious(0.01) probably_damaging(1) TCGA-AA-3492-01 17 60601614 60601614 G A TLK2 Silent p.A95A 0.09 TCGA-AA-3492-01 17 60631040 60631040 A - TLK2 Frame_Shift_Del p.I217Yfs*4 0.28 TCGA-AA-3492-01 17 60814474 60814474 G A MARCH10 Missense_Mutation p.S252L 0.39 tolerated(1) benign(0) TCGA-AA-3492-01 17 61466045 61466045 G T TANC2 Missense_Mutation p.W840L 0.37 deleterious(0.01) possibly_damaging(0.609) TCGA-AA-3492-01 17 61512547 61512547 G A CYB561 Missense_Mutation p.R155C 0.53 tolerated(0.18) benign(0.056) TCGA-AA-3492-01 17 61571358 61571358 A G ACE Missense_Mutation p.Q1071R 0.51 tolerated(0.4) possibly_damaging(0.604) TCGA-AA-3492-01 17 61619676 61619676 C G KCNH6 Missense_Mutation p.L677V 0.29 deleterious(0) probably_damaging(0.991) TCGA-AA-3492-01 17 62038743 62038743 G A SCN4A Missense_Mutation p.A552V 0.40 deleterious(0) possibly_damaging(0.562) TCGA-AA-3492-01 17 62144228 62144228 G A ERN1 Silent p.D215D 0.35 TCGA-AA-3492-01 17 63193355 63193355 C T RGS9 Silent p.F324F 0.47 TCGA-AA-3492-01 17 63200408 63200408 C A RGS9 Missense_Mutation p.L398I 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 63221502 63221502 C A RGS9 Missense_Mutation p.A597D 0.36 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-AA-3492-01 17 63533939 63533940 CT - AXIN2 Frame_Shift_Del p.E405Gfs*56 0.27 TCGA-AA-3492-01 17 63554167 63554167 A - AXIN2 Frame_Shift_Del p.L191* 0.29 TCGA-AA-3492-01 17 6382038 6382038 G A PITPNM3 Silent p.H202H 0.50 TCGA-AA-3492-01 17 64208246 64208246 C T APOH 3'UTR 0.29 TCGA-AA-3492-01 17 67109401 67109401 A G ABCA6 Missense_Mutation p.F668S 0.33 deleterious(0) possibly_damaging(0.866) TCGA-AA-3492-01 17 67251688 67251688 C A ABCA5 Missense_Mutation p.G1355V 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 17 6930396 6930396 A G BCL6B Missense_Mutation p.K438R 0.56 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3492-01 17 6945482 6945482 C - SLC16A11 Frame_Shift_Del p.G340Vfs*12 0.37 TCGA-AA-3492-01 17 70117861 70117861 A G SOX9 Missense_Mutation p.N110S 0.43 deleterious(0) possibly_damaging(0.723) TCGA-AA-3492-01 17 70119759 70119760 GA - SOX9 Frame_Shift_Del p.E255Gfs*40 0.32 TCGA-AA-3492-01 17 70120406 70120406 A G SOX9 Missense_Mutation p.N470D 0.50 tolerated(0.62) benign(0.046) TCGA-AA-3492-01 17 7217226 7217226 G A GPS2 Missense_Mutation p.T160M 0.44 deleterious(0.05) benign(0.017) TCGA-AA-3492-01 17 7247270 7247270 G A ACAP1 Missense_Mutation p.A222T 0.35 tolerated(0.26) benign(0.003) TCGA-AA-3492-01 17 72473627 72473627 G A CD300A Missense_Mutation p.A196T 0.32 tolerated(1) benign(0.026) TCGA-AA-3492-01 17 72768372 72768372 C T NAT9 Missense_Mutation p.A127T 0.60 deleterious(0.04) benign(0.067) TCGA-AA-3492-01 17 73488659 73488659 C T KIAA0195 Silent p.C567C 0.28 TCGA-AA-3492-01 17 73517869 73517869 A G TSEN54 Missense_Mutation p.Q236R 0.37 tolerated(0.23) benign(0.007) TCGA-AA-3492-01 17 73831495 73831495 C T UNC13D Missense_Mutation p.D615N 0.38 deleterious(0) probably_damaging(0.937) TCGA-AA-3492-01 17 7401092 7401092 C A POLR2A Missense_Mutation p.P369T 0.44 probably_damaging(0.997) TCGA-AA-3492-01 17 74060087 74060087 G A SRP68 Silent p.R177R 0.44 TCGA-AA-3492-01 17 74387662 74387662 C T UBE2O Missense_Mutation p.E1081K 0.25 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 17 74473336 74473337 - G RHBDF2 Frame_Shift_Ins p.L312Tfs*52 0.20 TCGA-AA-3492-01 17 74524640 74524640 G - CYGB 3'UTR 0.50 TCGA-AA-3492-01 17 7577036 7577036 G - TP53 Frame_Shift_Del p.P301Qfs*44 0.37 TCGA-AA-3492-01 17 76046980 76046980 A - TNRC6C Frame_Shift_Del p.N615Mfs*45 0.48 TCGA-AA-3492-01 17 76116592 76116592 G T TMC6 Intron 0.36 TCGA-AA-3492-01 17 76135305 76135305 G A TMC8 Missense_Mutation p.R629Q 0.46 deleterious(0.03) benign(0.067) TCGA-AA-3492-01 17 76450616 76450616 C A DNAH17 Nonsense_Mutation p.G3434* 0.38 TCGA-AA-3492-01 17 76521126 76521126 G A DNAH17 Missense_Mutation p.R1273C 0.33 benign(0.002) TCGA-AA-3492-01 17 7696006 7696006 G A DNAH2 Missense_Mutation p.V2393I 0.53 benign(0.113) TCGA-AA-3492-01 17 77076359 77076359 G A ENGASE Silent p.S212S 0.57 TCGA-AA-3492-01 17 77092746 77092746 C T RBFOX3 Missense_Mutation p.A262T 0.42 tolerated_low_confidence(0.09) benign(0.201) TCGA-AA-3492-01 17 77093406 77093406 C T RBFOX3 Silent p.A241A 0.47 TCGA-AA-3492-01 17 77100157 77100157 T C RBFOX3 Missense_Mutation p.K138E 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 17 7751828 7751828 C - KDM6B Frame_Shift_Del p.T743Pfs*39 0.38 TCGA-AA-3492-01 17 77808751 77808751 G - CBX4 Frame_Shift_Del p.N231Tfs*3 0.31 TCGA-AA-3492-01 17 7797756 7797756 G - CHD3 Frame_Shift_Del p.E427Rfs*116 0.27 TCGA-AA-3492-01 17 78079569 78079569 C T GAA Missense_Mutation p.R190C 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 17 79094541 79094541 G T AATK Silent p.S1065S 0.48 TCGA-AA-3492-01 17 79098553 79098553 C T AATK Silent p.V312V 0.40 TCGA-AA-3492-01 17 79177380 79177380 G A AZI1 Silent p.C181C 0.38 TCGA-AA-3492-01 17 79207358 79207358 C T ENTHD2 Intron 0.42 TCGA-AA-3492-01 17 79409713 79409713 C T RP11-1055B8.7 Silent p.A446A 0.27 TCGA-AA-3492-01 17 80037252 80037252 G A FASN Missense_Mutation p.A2460V 0.33 tolerated(0.19) benign(0.036) TCGA-AA-3492-01 17 80048267 80048267 G A FASN Silent p.G618G 0.41 TCGA-AA-3492-01 17 80615753 80615753 A G RAB40B Missense_Mutation p.C275R 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3492-01 17 80616540 80616540 G T RAB40B Missense_Mutation p.A131E 0.28 tolerated(0.51) probably_damaging(0.996) TCGA-AA-3492-01 17 8707380 8707380 C T PIK3R6 Missense_Mutation p.R695H 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 17 8730554 8730554 C T PIK3R6 Missense_Mutation p.V484I 0.48 deleterious(0.03) benign(0.072) TCGA-AA-3492-01 17 9631546 9631546 G A USP43 Missense_Mutation p.A871T 0.10 tolerated(0.93) benign(0.004) TCGA-AA-3492-01 18 12014362 12014362 C T IMPA2 Silent p.S160S 0.37 TCGA-AA-3492-01 18 13087233 13087233 G T CEP192 Missense_Mutation p.R1945M 0.13 tolerated(0.1) probably_damaging(0.957) TCGA-AA-3492-01 18 14106344 14106344 T - ZNF519 Frame_Shift_Del p.A66Qfs*23 0.35 TCGA-AA-3492-01 18 19080598 19080598 A C GREB1L Missense_Mutation p.N1356T 0.45 deleterious(0) possibly_damaging(0.474) TCGA-AA-3492-01 18 19424072 19424072 C T MIB1 Missense_Mutation p.A690V 0.11 deleterious(0) possibly_damaging(0.639) TCGA-AA-3492-01 18 21119790 21119790 G A NPC1 Missense_Mutation p.A927V 0.30 deleterious(0) possibly_damaging(0.83) TCGA-AA-3492-01 18 21269818 21269818 G A LAMA3 Silent p.A57A 0.36 TCGA-AA-3492-01 18 21461989 21461989 C T LAMA3 Silent p.C1734C 0.24 TCGA-AA-3492-01 18 21746554 21746554 T - OSBPL1A Frame_Shift_Del p.N883Mfs*4 0.29 TCGA-AA-3492-01 18 21819266 21819266 A T OSBPL1A Missense_Mutation p.H454Q 0.32 tolerated(0.07) possibly_damaging(0.53) TCGA-AA-3492-01 18 23713842 23713842 C T PSMA8 5'UTR 0.46 TCGA-AA-3492-01 18 23845165 23845165 G A TAF4B Silent p.P125P 0.36 TCGA-AA-3492-01 18 23866153 23866153 G A TAF4B Missense_Mutation p.G427E 0.33 tolerated(0.12) possibly_damaging(0.776) TCGA-AA-3492-01 18 24039732 24039732 G A KCTD1 Missense_Mutation p.T156M 0.59 tolerated(0.44) benign(0.012) TCGA-AA-3492-01 18 246401 246401 C T THOC1 Missense_Mutation p.A281T 0.17 tolerated(0.14) possibly_damaging(0.795) TCGA-AA-3492-01 18 2925363 2925363 C T LPIN2 Silent p.P599P 0.42 TCGA-AA-3492-01 18 33234733 33234733 A - GALNT1 Frame_Shift_Del p.K38Rfs*11 0.30 TCGA-AA-3492-01 18 34298167 34298167 C T FHOD3 Missense_Mutation p.P794L 0.37 tolerated(0.28) benign(0.152) TCGA-AA-3492-01 18 34298261 34298261 G - FHOD3 Frame_Shift_Del p.E827Rfs*8 0.19 TCGA-AA-3492-01 18 34854369 34854369 G A CELF4 Missense_Mutation p.R236C 0.32 deleterious(0) probably_damaging(0.972) TCGA-AA-3492-01 18 39617657 39617657 G A PIK3C3 Missense_Mutation p.S614N 0.31 deleterious(0) possibly_damaging(0.482) TCGA-AA-3492-01 18 44157752 44157752 C T LOXHD1 Missense_Mutation p.G630S 0.39 tolerated(0.46) benign(0) TCGA-AA-3492-01 18 44555252 44555252 G A TCEB3C Missense_Mutation p.P321L 0.12 deleterious(0.01) benign(0.017) TCGA-AA-3492-01 18 45567085 45567085 C - ZBTB7C Frame_Shift_Del p.D132Tfs*90 0.34 TCGA-AA-3492-01 18 48473598 48473598 T C ME2 3'UTR 0.43 TCGA-AA-3492-01 18 50942654 50942654 G T DCC Intron 0.50 TCGA-AA-3492-01 18 50942655 50942655 A G DCC Intron 0.52 TCGA-AA-3492-01 18 52556548 52556548 G A RAB27B Silent p.Q187Q 0.46 TCGA-AA-3492-01 18 56348561 56348561 C - MALT1 Frame_Shift_Del p.P125Qfs*3 0.23 TCGA-AA-3492-01 18 59942660 59942660 T A KIAA1468 Missense_Mutation p.V974D 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 18 59966056 59966057 - A KIAA1468 Frame_Shift_Ins p.V1167Sfs*2 0.26 TCGA-AA-3492-01 18 60033951 60033951 G A TNFRSF11A Nonsense_Mutation p.W247* 0.30 TCGA-AA-3492-01 18 60639886 60639887 - A PHLPP1 Frame_Shift_Ins p.T1236Nfs*38 0.33 TCGA-AA-3492-01 18 60642776 60642776 C T PHLPP1 Missense_Mutation p.P1301L 0.10 deleterious(0.01) probably_damaging(0.962) TCGA-AA-3492-01 18 63548066 63548066 G - CDH7 Frame_Shift_Del p.G766Dfs*34 0.28 TCGA-AA-3492-01 18 65179822 65179822 A T DSEL Missense_Mutation p.I685N 0.34 tolerated(0.08) benign(0.193) TCGA-AA-3492-01 18 66358509 66358509 T C TMX3 Intron 0.35 TCGA-AA-3492-01 18 669136 669136 C T TYMS Silent p.D173D 0.42 TCGA-AA-3492-01 18 67673696 67673696 G A RTTN Missense_Mutation p.A2149V 0.43 deleterious(0.01) benign(0.079) TCGA-AA-3492-01 18 67993795 67993795 C - SOCS6 3'UTR 0.44 TCGA-AA-3492-01 18 6983222 6983222 T C LAMA1 Missense_Mutation p.N1891S 0.33 tolerated(0.25) benign(0.003) TCGA-AA-3492-01 18 7036080 7036080 G A LAMA1 Missense_Mutation p.A582V 0.35 deleterious(0.02) possibly_damaging(0.905) TCGA-AA-3492-01 18 70417779 70417779 C G NETO1 Silent p.V353V 0.42 TCGA-AA-3492-01 18 71790717 71790717 A G FBXO15 Missense_Mutation p.F342L 0.40 tolerated(0.59) benign(0.003) TCGA-AA-3492-01 18 72226560 72226560 G A CNDP1 Silent p.T52T 0.35 TCGA-AA-3492-01 18 73000786 73000786 C T TSHZ1 3'UTR 0.09 TCGA-AA-3492-01 18 74091806 74091806 G A ZNF516 Missense_Mutation p.A755V 0.36 deleterious(0.01) possibly_damaging(0.528) TCGA-AA-3492-01 18 76753314 76753314 G A SALL3 Silent p.S441S 0.63 TCGA-AA-3492-01 18 76754104 76754104 C T SALL3 Missense_Mutation p.R705W 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 18 76755160 76755160 G A SALL3 Missense_Mutation p.A1057T 0.28 tolerated(0.65) benign(0.024) TCGA-AA-3492-01 18 8798263 8798263 G A SOGA2 Missense_Mutation p.A804T 0.44 tolerated(0.72) benign(0.005) TCGA-AA-3492-01 18 9535807 9535807 C T RALBP1 Missense_Mutation p.R614C 0.29 tolerated_low_confidence(0.13) benign(0) TCGA-AA-3492-01 19 10088138 10088138 C G COL5A3 Missense_Mutation p.G1046A 0.38 probably_damaging(0.999) TCGA-AA-3492-01 19 10265586 10265586 T C DNMT1 Missense_Mutation p.I547V 0.42 tolerated(0.13) benign(0.421) TCGA-AA-3492-01 19 10277310 10277310 G A DNMT1 Silent p.G285G 0.22 TCGA-AA-3492-01 19 10369392 10369392 G A MRPL4 Intron 0.33 TCGA-AA-3492-01 19 1037863 1037863 A C CNN2 Missense_Mutation p.E298D 0.41 tolerated_low_confidence(0.15) unknown(0) TCGA-AA-3492-01 19 10381750 10381750 C A ICAM1 5'UTR 0.23 TCGA-AA-3492-01 19 10402738 10402738 C T ICAM5 Missense_Mutation p.A234V 0.65 tolerated(0.46) benign(0.001) TCGA-AA-3492-01 19 1053517 1053517 C T ABCA7 Missense_Mutation p.T1137I 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 19 10568599 10568599 C T PDE4A Nonsense_Mutation p.R308* 0.25 TCGA-AA-3492-01 19 10662797 10662797 G T ATG4D Missense_Mutation p.E374D 0.40 deleterious(0.04) probably_damaging(0.983) TCGA-AA-3492-01 19 10670498 10670498 C T KRI1 Silent p.P311P 0.48 TCGA-AA-3492-01 19 1073569 1073569 T C HMHA1 Silent p.I226I 0.39 TCGA-AA-3492-01 19 10791928 10791928 C T ILF3 Missense_Mutation p.T368M 0.41 tolerated(0.11) possibly_damaging(0.884) TCGA-AA-3492-01 19 10943830 10943830 C T TMED1 Silent p.L175L 0.36 TCGA-AA-3492-01 19 110923 110923 G A OR4F17 Missense_Mutation p.R82H 0.18 tolerated(1) benign(0.001) TCGA-AA-3492-01 19 11144479 11144479 T C SMARCA4 Missense_Mutation p.F1271L 0.45 benign(0) TCGA-AA-3492-01 19 11546856 11546856 C A PRKCSH Intron 0.29 TCGA-AA-3492-01 19 11558373 11558373 A G PRKCSH Silent p.E323E 0.28 TCGA-AA-3492-01 19 11597870 11597870 C T ZNF653 Silent p.A425A 0.42 TCGA-AA-3492-01 19 11892027 11892027 G A ZNF441 Missense_Mutation p.R463Q 0.35 tolerated(0.74) benign(0.043) TCGA-AA-3492-01 19 1206913 1206913 A G STK11 Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-AA-3492-01 19 12502704 12502704 T C ZNF799 Missense_Mutation p.N170D 0.27 tolerated(0.4) benign(0) TCGA-AA-3492-01 19 1257161 1257161 G - MIDN Frame_Shift_Del p.G434Afs*91 0.43 TCGA-AA-3492-01 19 12740044 12740044 A - ZNF791 Frame_Shift_Del p.K569Nfs*3 0.35 TCGA-AA-3492-01 19 12760799 12760799 C T MAN2B1 Missense_Mutation p.R732H 0.50 deleterious(0) possibly_damaging(0.797) TCGA-AA-3492-01 19 12902925 12902925 G - JUNB Frame_Shift_Del p.G115Vfs*35 0.24 TCGA-AA-3492-01 19 12980059 12980059 C T MAST1 Missense_Mutation p.R985C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 19 13008644 13008644 G A GCDH Missense_Mutation p.A404T 0.38 deleterious_low_confidence(0.02) benign(0.013) TCGA-AA-3492-01 19 13033672 13033672 T A FARSA Missense_Mutation p.N473Y 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 19 13210475 13210475 G A LYL1 Silent p.N167N 0.45 TCGA-AA-3492-01 19 13409967 13409967 G A CACNA1A Missense_Mutation p.P827L 0.33 probably_damaging(0.96) TCGA-AA-3492-01 19 13616836 13616836 C T CACNA1A Missense_Mutation p.R68Q 0.36 benign(0.417) TCGA-AA-3492-01 19 13888898 13888898 A G C19orf53 Silent p.E62E 0.50 TCGA-AA-3492-01 19 14076470 14076470 A G RFX1 Missense_Mutation p.I694T 0.44 tolerated(0.08) benign(0.004) TCGA-AA-3492-01 19 1434803 1434803 C A DAZAP1 Silent p.S372S 0.44 TCGA-AA-3492-01 19 14507979 14507979 C T CD97 Missense_Mutation p.P190L 0.47 tolerated(0.09) probably_damaging(0.96) TCGA-AA-3492-01 19 1466477 1466477 G A APC2 Silent p.A1059A 0.27 TCGA-AA-3492-01 19 14910414 14910414 A - OR7C1 Frame_Shift_Del p.C179Vfs*7 0.31 TCGA-AA-3492-01 19 15067364 15067364 C T SLC1A6 Missense_Mutation p.V365I 0.28 tolerated(1) benign(0) TCGA-AA-3492-01 19 15483811 15483811 G A AKAP8 Missense_Mutation p.P238S 0.31 tolerated(0.08) possibly_damaging(0.904) TCGA-AA-3492-01 19 15769314 15769314 C T CYP4F3 Silent p.L421L 0.24 TCGA-AA-3492-01 19 16625337 16625337 G A C19orf44 Missense_Mutation p.A589T 0.47 deleterious(0.01) probably_damaging(0.941) TCGA-AA-3492-01 19 16632450 16632450 A G CHERP Missense_Mutation p.Y666H 0.38 deleterious(0) probably_damaging(0.988) TCGA-AA-3492-01 19 17273174 17273174 C T MYO9B Silent p.R478R 0.31 TCGA-AA-3492-01 19 17322818 17322818 C - MYO9B 3'UTR 0.36 TCGA-AA-3492-01 19 17370101 17370101 T C USHBP1 Missense_Mutation p.Y348C 0.18 tolerated(0.09) probably_damaging(0.999) TCGA-AA-3492-01 19 17389949 17389949 G - BABAM1 3'UTR 0.42 TCGA-AA-3492-01 19 17476531 17476531 C T PLVAP Missense_Mutation p.R248H 0.29 deleterious(0.04) possibly_damaging(0.529) TCGA-AA-3492-01 19 17608091 17608091 C T SLC27A1 Missense_Mutation p.R342C 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 19 17615489 17615489 G A SLC27A1 3'UTR 0.50 TCGA-AA-3492-01 19 17643167 17643167 C T FAM129C Silent p.D125D 0.35 TCGA-AA-3492-01 19 17893964 17893964 C T FCHO1 Silent p.N692N 0.35 TCGA-AA-3492-01 19 1800363 1800363 T C ATP8B3 Missense_Mutation p.Y413C 0.30 deleterious(0) probably_damaging(0.971) TCGA-AA-3492-01 19 18084666 18084666 G A KCNN1 5'UTR 0.50 TCGA-AA-3492-01 19 18121094 18121094 T C ARRDC2 Silent p.R313R 0.23 TCGA-AA-3492-01 19 18174732 18174732 T C IL12RB1 Silent p.T524T 0.40 TCGA-AA-3492-01 19 18377717 18377717 C T KIAA1683 Silent p.L211L 0.48 TCGA-AA-3492-01 19 18499511 18499511 G A GDF15 Silent p.S231S 0.32 TCGA-AA-3492-01 19 18775147 18775147 G A KLHL26 Missense_Mutation p.A54T 0.46 tolerated(0.57) benign(0.026) TCGA-AA-3492-01 19 18879554 18879554 C - CRTC1 Frame_Shift_Del p.P442Qfs*85 0.37 TCGA-AA-3492-01 19 18900812 18900812 C T COMP Missense_Mutation p.R110H 0.50 tolerated(0.11) possibly_damaging(0.77) TCGA-AA-3492-01 19 18967752 18967752 C T UPF1 Missense_Mutation p.R631C 0.09 deleterious(0) possibly_damaging(0.901) TCGA-AA-3492-01 19 1918145 1918145 C T SCAMP4 Silent p.G52G 0.39 TCGA-AA-3492-01 19 19453359 19453359 C T MAU2 Missense_Mutation p.P251S 0.24 tolerated(0.06) possibly_damaging(0.896) TCGA-AA-3492-01 19 19453376 19453376 G A MAU2 Silent p.L256L 0.62 TCGA-AA-3492-01 19 19649198 19649198 G A CILP2 Missense_Mutation p.A14T 0.18 deleterious_low_confidence(0.05) unknown(0) TCGA-AA-3492-01 19 19745851 19745851 G A GMIP Missense_Mutation p.R578C 0.47 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 19 20808151 20808151 A G ZNF626 Missense_Mutation p.C178R 0.45 deleterious(0.03) probably_damaging(0.996) TCGA-AA-3492-01 19 21365575 21365575 C T ZNF431 Missense_Mutation p.H157Y 0.41 tolerated(0.11) benign(0.001) TCGA-AA-3492-01 19 21365581 21365581 G A ZNF431 Missense_Mutation p.E159K 0.41 tolerated(0.53) benign(0.004) TCGA-AA-3492-01 19 2214604 2214604 C T DOT1L Intron 0.27 TCGA-AA-3492-01 19 22154476 22154476 T G ZNF208 Missense_Mutation p.K1120N 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 19 22256337 22256337 A G ZNF257 Missense_Mutation p.K66R 0.22 deleterious(0.03) benign(0.305) TCGA-AA-3492-01 19 22574468 22574468 G C ZNF98 Missense_Mutation p.C523W 0.20 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 19 23869936 23869936 G A ZNF675 5'UTR 0.53 TCGA-AA-3492-01 19 288137 288137 G A PPAP2C Silent p.N50N 0.37 TCGA-AA-3492-01 19 2933621 2933621 T G ZNF77 Missense_Mutation p.S502R 0.36 tolerated(0.54) benign(0.006) TCGA-AA-3492-01 19 30054857 30054857 C T VSTM2B 3'UTR 0.21 TCGA-AA-3492-01 19 30205904 30205904 C T C19orf12 5'UTR 0.27 TCGA-AA-3492-01 19 31048246 31048247 TA - ZNF536 3'UTR 0.33 TCGA-AA-3492-01 19 31769404 31769404 G T TSHZ3 Missense_Mutation p.P432H 0.56 deleterious(0.03) possibly_damaging(0.711) TCGA-AA-3492-01 19 32949392 32949392 C T DPY19L3 Silent p.F433F 0.41 TCGA-AA-3492-01 19 33089094 33089094 C T ANKRD27 Missense_Mutation p.G1037D 0.50 tolerated_low_confidence(0.18) probably_damaging(0.931) TCGA-AA-3492-01 19 33616017 33616017 G A GPATCH1 Missense_Mutation p.R843H 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.723) TCGA-AA-3492-01 19 3433587 3433587 C T NFIC Missense_Mutation p.R236W 0.10 deleterious(0) possibly_damaging(0.906) TCGA-AA-3492-01 19 34887282 34887282 G - GPI Frame_Shift_Del p.E393Sfs*20 0.42 TCGA-AA-3492-01 19 34900108 34900108 G A RP11-618P17.4 Missense_Mutation p.A156T 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.514) TCGA-AA-3492-01 19 3547917 3547917 G - MFSD12 Frame_Shift_Del p.L256Cfs*30 0.35 TCGA-AA-3492-01 19 35501270 35501270 C T GRAMD1A Missense_Mutation p.T171M 0.32 deleterious(0) probably_damaging(0.985) TCGA-AA-3492-01 19 3600429 3600429 G A TBXA2R Silent p.C68C 0.19 TCGA-AA-3492-01 19 36017844 36017844 C T SBSN Missense_Mutation p.G447E 0.45 deleterious(0) probably_damaging(0.988) TCGA-AA-3492-01 19 3613158 3613158 G A CACTIN Missense_Mutation p.R562W 0.31 deleterious(0.01) possibly_damaging(0.864) TCGA-AA-3492-01 19 36210790 36210790 C T KMT2B Missense_Mutation p.R181W 0.41 unknown(0) TCGA-AA-3492-01 19 36362251 36362251 G T APLP1 Missense_Mutation p.E179D 0.38 deleterious(0.02) possibly_damaging(0.677) TCGA-AA-3492-01 19 37368324 37368324 G T ZNF345 Missense_Mutation p.G198C 0.44 deleterious(0) probably_damaging(0.978) TCGA-AA-3492-01 19 37618972 37618972 A - ZNF420 Frame_Shift_Del p.K361Nfs*214 0.32 TCGA-AA-3492-01 19 37880800 37880800 A G ZNF527 3'UTR 0.57 TCGA-AA-3492-01 19 38159354 38159354 A G ZNF781 3'UTR 0.33 TCGA-AA-3492-01 19 38189290 38189290 C T ZNF607 Missense_Mutation p.R581Q 0.24 deleterious(0.02) possibly_damaging(0.861) TCGA-AA-3492-01 19 38378415 38378416 - T WDR87 Frame_Shift_Ins p.Q1927Tfs*32 0.30 TCGA-AA-3492-01 19 38858775 38858775 C T CATSPERG Silent p.I1006I 0.43 TCGA-AA-3492-01 19 38954161 38954161 C T RYR1 Silent p.Y892Y 0.78 TCGA-AA-3492-01 19 39037156 39037156 G A RYR1 Silent p.S4028S 0.11 TCGA-AA-3492-01 19 39062778 39062778 C T RYR1 Silent p.G4622G 0.38 TCGA-AA-3492-01 19 39219727 39219727 G A ACTN4 Missense_Mutation p.R837Q 0.38 tolerated(0.1) benign(0.066) TCGA-AA-3492-01 19 39293010 39293010 A C LGALS4 Missense_Mutation p.L202R 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3492-01 19 39789259 39789259 A G IFNL1 3'UTR 0.28 TCGA-AA-3492-01 19 39879774 39879774 T G PAF1 Missense_Mutation p.I176L 0.33 deleterious(0.04) possibly_damaging(0.734) TCGA-AA-3492-01 19 39905798 39905798 G - PLEKHG2 Frame_Shift_Del p.I94Sfs*47 0.35 TCGA-AA-3492-01 19 39980372 39980372 G A TIMM50 Missense_Mutation p.R428H 0.40 deleterious(0.02) possibly_damaging(0.905) TCGA-AA-3492-01 19 4054814 4054814 G A ZBTB7A Silent p.D139D 0.49 TCGA-AA-3492-01 19 40882586 40882586 A G PLD3 Missense_Mutation p.I364V 0.45 tolerated(1) benign(0.004) TCGA-AA-3492-01 19 41086793 41086793 C T SHKBP1 Silent p.S265S 0.42 TCGA-AA-3492-01 19 41119524 41119524 A C LTBP4 Intron 0.62 TCGA-AA-3492-01 19 41248335 41248335 C T C19orf54 3'UTR 0.38 TCGA-AA-3492-01 19 41627422 41627422 G A CYP2F1 Missense_Mutation p.V182M 0.32 deleterious(0) possibly_damaging(0.903) TCGA-AA-3492-01 19 41929040 41929042 AGG - BCKDHA In_Frame_Del p.E379del 0.26 TCGA-AA-3492-01 19 42260713 42260713 C A CEACAM6 Silent p.T90T 0.34 TCGA-AA-3492-01 19 42753648 42753648 C T ERF Missense_Mutation p.A206T 0.56 tolerated(0.43) benign(0.361) TCGA-AA-3492-01 19 42847703 42847703 G - MEGF8 Frame_Shift_Del p.Y532Tfs*9 0.20 TCGA-AA-3492-01 19 42893145 42893145 G T CNFN Missense_Mutation p.S15R 0.38 tolerated(0.25) benign(0.009) TCGA-AA-3492-01 19 42930735 42930735 C T LIPE Silent p.T189T 0.37 TCGA-AA-3492-01 19 44590017 44590017 T C ZNF284 Missense_Mutation p.V129A 0.52 tolerated(0.53) benign(0.005) TCGA-AA-3492-01 19 44792637 44792637 T - ZNF235 Frame_Shift_Del p.K317Nfs*154 0.33 TCGA-AA-3492-01 19 44833200 44833200 A G ZNF112 Silent p.S376S 0.41 TCGA-AA-3492-01 19 44933619 44933619 G T ZNF229 Missense_Mutation p.S446Y 0.26 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 19 4544428 4544428 C T SEMA6B Missense_Mutation p.V618M 0.50 deleterious(0.03) possibly_damaging(0.592) TCGA-AA-3492-01 19 45567329 45567329 G A CLASRP Missense_Mutation p.R322H 0.44 tolerated(0.16) benign(0.007) TCGA-AA-3492-01 19 45655363 45655363 G - NKPD1 Frame_Shift_Del p.H778Tfs*98 0.36 TCGA-AA-3492-01 19 45858976 45858976 C T ERCC2 Missense_Mutation p.R497H 0.30 deleterious(0.01) benign(0.049) TCGA-AA-3492-01 19 45888969 45888969 G A PPP1R13L Missense_Mutation p.A700V 0.40 deleterious(0) possibly_damaging(0.717) TCGA-AA-3492-01 19 46025477 46025477 T C VASP Splice_Site p.X160_splice 0.43 TCGA-AA-3492-01 19 46307557 46307557 C T RSPH6A Missense_Mutation p.D536N 0.53 deleterious(0.03) benign(0.378) TCGA-AA-3492-01 19 46404834 46404834 G A MYPOP Silent p.I66I 0.55 TCGA-AA-3492-01 19 46404875 46404875 G A MYPOP Missense_Mutation p.R53W 0.43 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 19 46443243 46443243 G A NOVA2 Missense_Mutation p.R453W 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 19 46444150 46444150 G A NOVA2 Silent p.G150G 0.55 TCGA-AA-3492-01 19 46842910 46842910 C T HIF3A 3'UTR 0.33 TCGA-AA-3492-01 19 47151878 47151878 G A DACT3 Missense_Mutation p.A584V 0.30 tolerated(0.18) possibly_damaging(0.695) TCGA-AA-3492-01 19 47178336 47178336 C T PRKD2 Missense_Mutation p.R793H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 19 47879748 47879748 G A DHX34 Missense_Mutation p.V844I 0.50 tolerated(0.21) benign(0.125) TCGA-AA-3492-01 19 47986795 47986795 G - KPTN Frame_Shift_Del p.K92Sfs*22 0.21 TCGA-AA-3492-01 19 49002214 49002214 G - LMTK3 Frame_Shift_Del p.E734Rfs*153 0.35 TCGA-AA-3492-01 19 49858419 49858419 G - TEAD2 Frame_Shift_Del p.W176Gfs*6 0.30 TCGA-AA-3492-01 19 49949661 49949661 G A PIH1D1 Missense_Mutation p.P284L 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 19 50098021 50098021 G A PRR12 Silent p.P143P 0.29 TCGA-AA-3492-01 19 50248568 50248568 C T TSKS Missense_Mutation p.G360S 0.42 tolerated(0.41) probably_damaging(1) TCGA-AA-3492-01 19 50308929 50308929 C - AP2A1 Frame_Shift_Del p.Q851Rfs*5 0.29 TCGA-AA-3492-01 19 50399241 50399241 C T IL4I1 Missense_Mutation p.R50H 0.31 tolerated(0.68) benign(0.001) TCGA-AA-3492-01 19 50474487 50474487 G A SIGLEC16 RNA 0.22 TCGA-AA-3492-01 19 50713833 50713833 C T MYH14 Missense_Mutation p.R71W 0.40 deleterious(0) probably_damaging(0.968) TCGA-AA-3492-01 19 50958518 50958518 A C MYBPC2 Missense_Mutation p.Q723P 0.47 deleterious(0.04) benign(0.073) TCGA-AA-3492-01 19 51170214 51170214 G A SHANK1 Missense_Mutation p.P1668L 0.56 unknown(0) TCGA-AA-3492-01 19 51190067 51190067 A G SHANK1 Missense_Mutation p.Y798H 0.39 possibly_damaging(0.86) TCGA-AA-3492-01 19 51206886 51206886 G A SHANK1 Missense_Mutation p.S475L 0.39 possibly_damaging(0.602) TCGA-AA-3492-01 19 51217155 51217155 C T SHANK1 Missense_Mutation p.R231Q 0.40 possibly_damaging(0.833) TCGA-AA-3492-01 19 51274895 51274895 A G GPR32 Silent p.S346S 0.52 TCGA-AA-3492-01 19 51362890 51362890 A G KLK3 Intron 0.47 TCGA-AA-3492-01 19 51537907 51537908 - G KLK12 Intron 0.28 TCGA-AA-3492-01 19 51844515 51844515 C - VSIG10L Frame_Shift_Del p.V263Ffs*72 0.42 TCGA-AA-3492-01 19 51875287 51875287 G A NKG7 Missense_Mutation p.R116W 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3492-01 19 518973 518973 C T TPGS1 Silent p.R141R 0.50 TCGA-AA-3492-01 19 5244068 5244068 C T PTPRS Missense_Mutation p.V472M 0.46 tolerated(0.25) possibly_damaging(0.861) TCGA-AA-3492-01 19 53117645 53117645 C T ZNF83 Missense_Mutation p.R58H 0.40 deleterious(0) benign(0.354) TCGA-AA-3492-01 19 53741184 53741184 T C ZNF677 Missense_Mutation p.N266D 0.37 tolerated(0.24) benign(0.001) TCGA-AA-3492-01 19 54308641 54308641 A G NLRP12 Silent p.N769N 0.33 TCGA-AA-3492-01 19 54726254 54726254 G A LILRB3 Missense_Mutation p.S84F 0.61 tolerated(0.16) benign(0.063) TCGA-AA-3492-01 19 55014100 55014100 G A LAIR2 5'UTR 0.33 TCGA-AA-3492-01 19 55106258 55106258 G A LILRA1 Missense_Mutation p.A67T 0.07 tolerated(0.37) possibly_damaging(0.744) TCGA-AA-3492-01 19 55221632 55221632 G A AC098784.2 3'Flank 0.37 TCGA-AA-3492-01 19 55539144 55539144 A G GP6 Missense_Mutation p.Y138H 0.50 tolerated_low_confidence(0.11) benign(0.004) TCGA-AA-3492-01 19 55593234 55593234 C T EPS8L1 Missense_Mutation p.R290C 0.50 deleterious(0) probably_damaging(0.991) TCGA-AA-3492-01 19 55604237 55604237 C T PPP1R12C Splice_Site p.X609_splice 0.47 TCGA-AA-3492-01 19 55812919 55812919 C A BRSK1 Missense_Mutation p.L240M 0.50 deleterious(0) possibly_damaging(0.887) TCGA-AA-3492-01 19 56113645 56113646 - C ZNF524 Frame_Shift_Ins p.K59Qfs*31 0.56 TCGA-AA-3492-01 19 56190016 56190016 G A EPN1 Missense_Mutation p.R119H 0.32 deleterious(0) unknown(0) TCGA-AA-3492-01 19 5661798 5661798 G A SAFB Missense_Mutation p.R711Q 0.25 deleterious(0.02) unknown(0) TCGA-AA-3492-01 19 57325372 57325372 C T PEG3 Missense_Mutation p.D1480N 0.38 tolerated(0.08) probably_damaging(0.984) TCGA-AA-3492-01 19 57335857 57335857 T C PEG3 Missense_Mutation p.E56G 0.45 tolerated(0.07) probably_damaging(0.966) TCGA-AA-3492-01 19 57803332 57803332 C - ZNF460 Frame_Shift_Del p.Y476Mfs*57 0.25 TCGA-AA-3492-01 19 57955627 57955627 A G ZNF749 Missense_Mutation p.R371G 0.49 tolerated(0.5) benign(0.01) TCGA-AA-3492-01 19 58452346 58452346 T A ZNF256 Missense_Mutation p.K610N 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 19 58601297 58601297 T C ZSCAN18 Missense_Mutation p.Y169C 0.33 tolerated(0.19) benign(0.03) TCGA-AA-3492-01 19 58805889 58805889 A G ZNF8 Missense_Mutation p.S239G 0.37 tolerated(0.44) benign(0) TCGA-AA-3492-01 19 58846335 58846335 G A ZSCAN22 Missense_Mutation p.R56H 0.28 tolerated(0.19) benign(0.003) TCGA-AA-3492-01 19 58928651 58928651 G A ZNF584 Missense_Mutation p.A256T 0.32 tolerated(0.27) probably_damaging(0.999) TCGA-AA-3492-01 19 58980632 58980632 G A ZNF324 Missense_Mutation p.R27H 0.64 deleterious(0.03) benign(0.058) TCGA-AA-3492-01 19 59023241 59023241 C T SLC27A5 Missense_Mutation p.A28T 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.557) TCGA-AA-3492-01 19 59069699 59069699 G A UBE2M Missense_Mutation p.A17V 0.35 tolerated(0.1) benign(0.001) TCGA-AA-3492-01 19 6047439 6047439 C T RFX2 Silent p.P23P 0.50 TCGA-AA-3492-01 19 6262287 6262287 C T MLLT1 Silent p.S76S 0.37 TCGA-AA-3492-01 19 6916351 6916351 T C EMR1 Silent p.C464C 0.32 TCGA-AA-3492-01 19 7030632 7030632 C T MBD3L5 Missense_Mutation p.P4S 0.07 tolerated(0.14) benign(0.041) TCGA-AA-3492-01 19 7143009 7143009 C A INSR Missense_Mutation p.S787I 0.33 tolerated(0.12) benign(0.001) TCGA-AA-3492-01 19 7504999 7504999 C T ARHGEF18 Missense_Mutation p.A58V 0.40 deleterious_low_confidence(0.02) benign(0.086) TCGA-AA-3492-01 19 7688684 7688684 C T XAB2 Missense_Mutation p.R351H 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3492-01 19 7691084 7691084 G A XAB2 Missense_Mutation p.R199C 0.38 deleterious(0.02) benign(0.014) TCGA-AA-3492-01 19 7712333 7712333 G A STXBP2 Missense_Mutation p.M544I 0.32 deleterious(0.01) benign(0.122) TCGA-AA-3492-01 19 7975055 7975055 C T MAP2K7 Intron 0.28 TCGA-AA-3492-01 19 7997804 7997804 C T TIMM44 Missense_Mutation p.M261I 0.29 tolerated(0.24) benign(0.186) TCGA-AA-3492-01 19 8563816 8563816 G A PRAM1 Silent p.D292D 0.59 TCGA-AA-3492-01 19 8563992 8563992 C A PRAM1 Missense_Mutation p.G234C 0.33 deleterious(0.05) possibly_damaging(0.851) TCGA-AA-3492-01 19 8808195 8808195 C T ACTL9 Missense_Mutation p.R286H 0.37 tolerated(0.36) benign(0.024) TCGA-AA-3492-01 19 8932718 8932718 G A ZNF558 Silent p.G27G 0.39 TCGA-AA-3492-01 19 9064066 9064066 A T MUC16 Missense_Mutation p.S7794T 0.37 unknown(0) TCGA-AA-3492-01 19 9068355 9068355 A T MUC16 Missense_Mutation p.L6364Q 0.49 unknown(0) TCGA-AA-3492-01 19 9451940 9451940 A C ZNF559 Intron 0.23 TCGA-AA-3492-01 19 9523994 9523994 C T ZNF266 Missense_Mutation p.R536Q 0.29 tolerated(0.69) benign(0.003) TCGA-AA-3492-01 19 971952 971952 A G ARID3A Missense_Mutation p.S557G 0.19 tolerated_low_confidence(0.67) unknown(0) TCGA-AA-3492-01 1 100159626 100159626 A G PALMD 3'UTR 0.42 TCGA-AA-3492-01 1 103345360 103345360 G A COL11A1 Missense_Mutation p.A1718V 0.28 unknown(0) TCGA-AA-3492-01 1 103474066 103474066 G C COL11A1 Missense_Mutation p.P546A 0.41 unknown(0) TCGA-AA-3492-01 1 10364514 10364514 C T KIF1B Intron 0.41 TCGA-AA-3492-01 1 108023429 108023429 G A NTNG1 Silent p.T529T 0.27 TCGA-AA-3492-01 1 109366208 109366208 C T AKNAD1 Missense_Mutation p.C680Y 0.07 tolerated(0.54) benign(0.034) TCGA-AA-3492-01 1 109444510 109444510 A - GPSM2 Frame_Shift_Del p.K300Rfs*7 0.29 TCGA-AA-3492-01 1 109813095 109813095 C A CELSR2 Nonsense_Mutation p.C2452* 0.41 TCGA-AA-3492-01 1 110085739 110085739 C T GPR61 Missense_Mutation p.P32L 0.39 tolerated(0.15) benign(0.001) TCGA-AA-3492-01 1 110740102 110740102 C T SLC6A17 Missense_Mutation p.R566C 0.28 tolerated(0.18) possibly_damaging(0.534) TCGA-AA-3492-01 1 111770366 111770366 C A CHI3L2 Silent p.T5T 0.22 TCGA-AA-3492-01 1 112031610 112031610 A C ADORA3 Missense_Mutation p.F165C 0.35 deleterious_low_confidence(0) possibly_damaging(0.639) TCGA-AA-3492-01 1 113235389 113235389 G A MOV10 Silent p.Q326Q 0.38 TCGA-AA-3492-01 1 114522207 114522207 G C OLFML3 Missense_Mutation p.Q23H 0.28 tolerated(0.27) benign(0.015) TCGA-AA-3492-01 1 1149110 1149110 G A TNFRSF4 Silent p.C67C 0.44 TCGA-AA-3492-01 1 115168288 115168288 G T DENND2C Missense_Mutation p.H106Q 0.43 tolerated(0.64) benign(0.002) TCGA-AA-3492-01 1 116206586 116206586 T - VANGL1 Frame_Shift_Del p.F172Sfs*99 0.30 TCGA-AA-3492-01 1 116243616 116243616 C T CASQ2 3'UTR 0.42 TCGA-AA-3492-01 1 116383112 116383112 T - NHLH2 5'UTR 0.28 TCGA-AA-3492-01 1 117127447 117127447 G A IGSF3 Missense_Mutation p.R910W 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 1 117303140 117303140 C G CD2 Missense_Mutation p.L167V 0.31 tolerated(0.28) benign(0.016) TCGA-AA-3492-01 1 117303152 117303152 G T CD2 Missense_Mutation p.V171F 0.30 tolerated(0.07) benign(0.018) TCGA-AA-3492-01 1 117544416 117544416 C T CD101 5'UTR 0.35 TCGA-AA-3492-01 1 118170174 118170174 G A FAM46C 3'UTR 0.29 TCGA-AA-3492-01 1 11842359 11842359 G A C1orf167 Missense_Mutation p.V1016M 0.36 tolerated(0.14) possibly_damaging(0.781) TCGA-AA-3492-01 1 120166405 120166405 C T ZNF697 Silent p.A187A 0.54 TCGA-AA-3492-01 1 120166408 120166408 G A ZNF697 Silent p.D186D 0.31 TCGA-AA-3492-01 1 120263693 120263693 G A PHGDH Intron 0.44 TCGA-AA-3492-01 1 12908038 12908038 C T HNRNPCL1 Silent p.A35A 0.21 TCGA-AA-3492-01 1 14057566 14057566 G A PRDM2 Silent p.P27P 0.47 TCGA-AA-3492-01 1 14107173 14107173 G A PRDM2 Silent p.L961L 0.29 TCGA-AA-3492-01 1 145414779 145414779 G T HFE2 5'UTR 0.45 TCGA-AA-3492-01 1 145473599 145473599 G A ANKRD34A Missense_Mutation p.A91T 0.38 tolerated(0.5) benign(0.203) TCGA-AA-3492-01 1 145474979 145474979 A G ANKRD34A 3'UTR 0.36 TCGA-AA-3492-01 1 145549325 145549325 T C ANKRD35 Silent p.R3R 0.45 TCGA-AA-3492-01 1 1471026 1471026 A G TMEM240 Missense_Mutation p.W106R 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3492-01 1 148933370 148933370 T C RP11-14N7.2 Splice_Site 0.13 TCGA-AA-3492-01 1 149755593 149755593 A G FCGR1A Silent p.P29P 0.35 TCGA-AA-3492-01 1 149883426 149883426 G T SV2A Missense_Mutation p.S243R 0.37 deleterious(0.02) probably_damaging(0.954) TCGA-AA-3492-01 1 149884981 149884981 C - SV2A Frame_Shift_Del p.E138Rfs*39 0.29 TCGA-AA-3492-01 1 149899861 149899861 A T SF3B4 5'UTR 0.44 TCGA-AA-3492-01 1 149915667 149915667 C - OTUD7B 3'UTR 0.56 TCGA-AA-3492-01 1 150307704 150307704 C T PRPF3 Missense_Mutation p.R343W 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 1 150598168 150598169 - G ENSA Frame_Shift_Ins p.Q117Tfs*21 0.32 TCGA-AA-3492-01 1 150955821 150955821 C T ANXA9 Missense_Mutation p.A28V 0.34 tolerated(0.12) probably_damaging(0.989) TCGA-AA-3492-01 1 151108162 151108162 A G SEMA6C Silent p.N446N 0.41 TCGA-AA-3492-01 1 151131643 151131643 C T TNFAIP8L2 Missense_Mutation p.T157M 0.35 deleterious(0.03) possibly_damaging(0.476) TCGA-AA-3492-01 1 151314930 151314930 G A RFX5 Missense_Mutation p.A528V 0.36 tolerated_low_confidence(0.67) benign(0) TCGA-AA-3492-01 1 151338112 151338112 A G SELENBP1 Missense_Mutation p.F324S 0.28 deleterious(0.01) benign(0.285) TCGA-AA-3492-01 1 151378052 151378052 C T POGZ Silent p.G1153G 0.48 TCGA-AA-3492-01 1 152085490 152085490 C T TCHH Missense_Mutation p.R68H 0.42 unknown(0) TCGA-AA-3492-01 1 152192468 152192468 C T HRNR Missense_Mutation p.G546D 0.35 unknown(0) TCGA-AA-3492-01 1 152275225 152275225 G A FLG Missense_Mutation p.S4046L 0.43 unknown(0) TCGA-AA-3492-01 1 152681887 152681887 C T LCE4A 3'UTR 0.24 TCGA-AA-3492-01 1 152759920 152759920 G A LCE1E Missense_Mutation p.G49R 0.37 deleterious_low_confidence(0) unknown(0) TCGA-AA-3492-01 1 153746472 153746472 T G INTS3 3'UTR 0.37 TCGA-AA-3492-01 1 15382751 15382751 C - KAZN Frame_Shift_Del p.P299Lfs*11 0.39 TCGA-AA-3492-01 1 153906129 153906129 G - DENND4B Frame_Shift_Del p.R1054Dfs*76 0.31 TCGA-AA-3492-01 1 153913708 153913708 T C DENND4B Missense_Mutation p.S394G 0.44 deleterious(0) benign(0.308) TCGA-AA-3492-01 1 153965404 153965404 A - NUP210L Frame_Shift_Del p.F1858Lfs*11 0.29 TCGA-AA-3492-01 1 154530763 154530763 C T UBE2Q1 Silent p.P89P 0.33 TCGA-AA-3492-01 1 154544283 154544283 G A CHRNB2 Silent p.T328T 0.28 TCGA-AA-3492-01 1 154841810 154841810 A G KCNN3 Missense_Mutation p.F211L 0.07 tolerated(0.88) benign(0.002) TCGA-AA-3492-01 1 154842345 154842345 C T KCNN3 Silent p.Q32Q 0.38 TCGA-AA-3492-01 1 154988154 154988154 C T ZBTB7B Missense_Mutation p.R374C 0.47 deleterious(0.02) probably_damaging(0.992) TCGA-AA-3492-01 1 154988273 154988273 C T ZBTB7B Silent p.C413C 0.26 TCGA-AA-3492-01 1 155448901 155448901 G A ASH1L Missense_Mutation p.R1254C 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-3492-01 1 155582980 155582980 C T MSTO1 Silent p.A413A 0.39 TCGA-AA-3492-01 1 155717381 155717381 C T GON4L 3'Flank 0.27 TCGA-AA-3492-01 1 156046736 156046736 C T MEX3A Missense_Mutation p.A398T 0.36 tolerated(0.89) benign(0.007) TCGA-AA-3492-01 1 156255585 156255585 G A TMEM79 Missense_Mutation p.G190R 0.44 tolerated(0.21) benign(0.018) TCGA-AA-3492-01 1 156552840 156552841 - G TTC24 Frame_Shift_Ins p.Q308Afs*50 0.27 TCGA-AA-3492-01 1 156556397 156556397 C T TTC24 3'UTR 0.41 TCGA-AA-3492-01 1 156594923 156594923 C T HAPLN2 Missense_Mutation p.T257M 0.43 deleterious(0) possibly_damaging(0.79) TCGA-AA-3492-01 1 156901751 156901751 C A LRRC71 Missense_Mutation p.P458H 0.48 tolerated(0.08) probably_damaging(0.973) TCGA-AA-3492-01 1 156907210 156907210 G - ARHGEF11 Frame_Shift_Del p.P1424Lfs*41 0.27 TCGA-AA-3492-01 1 1573904 1573904 C A CDK11B Missense_Mutation p.G437C 0.38 unknown(0) TCGA-AA-3492-01 1 15769916 15769916 A G CTRC Missense_Mutation p.N120S 0.45 deleterious(0.03) probably_damaging(0.967) TCGA-AA-3492-01 1 157718733 157718733 T A FCRL2 Missense_Mutation p.N442I 0.41 tolerated(0.19) benign(0.096) TCGA-AA-3492-01 1 157804330 157804330 G T CD5L Silent p.A195A 0.17 TCGA-AA-3492-01 1 158368542 158368542 C A OR10T2 Missense_Mutation p.V239F 0.34 deleterious(0) benign(0.013) TCGA-AA-3492-01 1 158435853 158435853 T A OR10K1 Missense_Mutation p.F168I 0.46 deleterious(0) probably_damaging(0.978) TCGA-AA-3492-01 1 158533299 158533299 A - OR6P1 Frame_Shift_Del p.F32Lfs*6 0.41 TCGA-AA-3492-01 1 158655062 158655062 G A SPTA1 Missense_Mutation p.R34W 0.35 deleterious(0) probably_damaging(0.983) TCGA-AA-3492-01 1 16053679 16053679 C - PLEKHM2 Frame_Shift_Del p.Q373Rfs*22 0.40 TCGA-AA-3492-01 1 160607200 160607200 T G SLAMF1 Missense_Mutation p.M66L 0.37 tolerated(0.41) benign(0.093) TCGA-AA-3492-01 1 160771603 160771603 G A LY9 Intron 0.31 TCGA-AA-3492-01 1 161017008 161017008 G A ARHGAP30 3'UTR 0.45 TCGA-AA-3492-01 1 161029440 161029440 C T ARHGAP30 Missense_Mutation p.R55H 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 1 161068553 161068553 C - KLHDC9 Frame_Shift_Del p.P78Rfs*30 0.27 TCGA-AA-3492-01 1 161494878 161494878 G A HSPA6 Missense_Mutation p.A144T 0.40 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-AA-3492-01 1 161647408 161647408 C T FCGR2B 3'UTR 0.34 TCGA-AA-3492-01 1 161695721 161695721 G A FCRLB Missense_Mutation p.D140N 0.10 tolerated(0.39) possibly_damaging(0.877) TCGA-AA-3492-01 1 16254891 16254891 G T SPEN Missense_Mutation p.R719M 0.41 probably_damaging(0.997) TCGA-AA-3492-01 1 16255883 16255883 A - SPEN Frame_Shift_Del p.I1052Sfs*40 0.24 TCGA-AA-3492-01 1 16270439 16270439 G - ZBTB17 Intron 0.40 TCGA-AA-3492-01 1 16355261 16355261 C A CLCNKA Missense_Mutation p.P325H 0.40 tolerated(0.54) probably_damaging(0.981) TCGA-AA-3492-01 1 16356551 16356551 C T CLCNKA Silent p.P463P 0.53 TCGA-AA-3492-01 1 16356977 16356977 C T CLCNKA Missense_Mutation p.A477V 0.40 deleterious(0) probably_damaging(0.99) TCGA-AA-3492-01 1 165876938 165876938 G A UCK2 Missense_Mutation p.V222M 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3492-01 1 166819371 166819371 C T POGK Missense_Mutation p.R519W 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3492-01 1 166958605 166958605 G T MAEL Missense_Mutation p.A6S 0.29 tolerated(0.33) benign(0.111) TCGA-AA-3492-01 1 166958646 166958646 C - MAEL Frame_Shift_Del p.E21Nfs*26 0.56 TCGA-AA-3492-01 1 167666935 167666935 C T RCSD1 Silent p.G358G 0.36 TCGA-AA-3492-01 1 168282171 168282171 G A TBX19 Silent p.S426S 0.44 TCGA-AA-3492-01 1 1685554 1685554 G A NADK Missense_Mutation p.T491M 0.36 deleterious(0) probably_damaging(0.97) TCGA-AA-3492-01 1 169823669 169823669 C T SCYL3 Silent p.P637P 0.47 TCGA-AA-3492-01 1 172001598 172001598 G A DNM3 Missense_Mutation p.A216T 0.43 deleterious(0) probably_damaging(0.992) TCGA-AA-3492-01 1 17249293 17249293 G T CROCC Missense_Mutation p.V66F 0.36 benign(0.03) TCGA-AA-3492-01 1 17250927 17250927 G A CROCC Missense_Mutation p.A102T 0.25 probably_damaging(1) TCGA-AA-3492-01 1 17257067 17257067 C T CROCC Missense_Mutation p.A276V 0.23 benign(0.08) TCGA-AA-3492-01 1 173743494 173743494 G A KLHL20 Missense_Mutation p.R449K 0.31 tolerated(0.11) benign(0.075) TCGA-AA-3492-01 1 173794322 173794322 C T DARS2 5'UTR 0.49 TCGA-AA-3492-01 1 173822554 173822554 G A DARS2 Missense_Mutation p.R471H 0.36 deleterious(0.03) probably_damaging(0.978) TCGA-AA-3492-01 1 175067523 175067523 G A TNN Silent p.T637T 0.41 TCGA-AA-3492-01 1 175348796 175348796 C T TNR Missense_Mutation p.A619T 0.41 deleterious(0.05) probably_damaging(1) TCGA-AA-3492-01 1 176826733 176826733 T A ASTN1 3'Flank 0.42 TCGA-AA-3492-01 1 17928654 17928654 C T ARHGEF10L Missense_Mutation p.A97V 0.47 tolerated_low_confidence(0.36) benign(0) TCGA-AA-3492-01 1 179983132 179983132 A - CEP350 Frame_Shift_Del p.N516Ifs*4 0.25 TCGA-AA-3492-01 1 179983555 179983555 G A CEP350 Missense_Mutation p.R656Q 0.43 benign(0.423) TCGA-AA-3492-01 1 180064806 180064806 A - CEP350 Frame_Shift_Del p.N2889Ifs*10 0.29 TCGA-AA-3492-01 1 182442873 182442873 T C RGSL1 Silent p.H209H 0.33 TCGA-AA-3492-01 1 182525230 182525230 G C RGSL1 3'UTR 0.38 TCGA-AA-3492-01 1 182845253 182845253 C T DHX9 Silent p.N628N 0.37 TCGA-AA-3492-01 1 182853893 182853893 C T DHX9 Missense_Mutation p.R1136C 0.26 deleterious(0.04) benign(0.035) TCGA-AA-3492-01 1 183079642 183079642 G A LAMC1 Missense_Mutation p.A292T 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 1 183221775 183221775 G A NMNAT2 3'UTR 0.43 TCGA-AA-3492-01 1 183495820 183495820 G A SMG7 Silent p.T134T 0.41 TCGA-AA-3492-01 1 183556091 183556091 G T NCF2 Silent p.R66R 0.25 TCGA-AA-3492-01 1 183914643 183914643 G A COLGALT2 Nonsense_Mutation p.R398* 0.12 TCGA-AA-3492-01 1 185069346 185069346 T - RNF2 Frame_Shift_Del p.S310Lfs*12 0.28 TCGA-AA-3492-01 1 185939610 185939610 A G HMCN1 Missense_Mutation p.T786A 0.41 probably_damaging(0.992) TCGA-AA-3492-01 1 186056762 186056762 C T HMCN1 Silent p.H3116H 0.37 TCGA-AA-3492-01 1 186306145 186306145 C A TPR Missense_Mutation p.K1502N 0.39 benign(0.403) TCGA-AA-3492-01 1 186643562 186643562 T C PTGS2 Missense_Mutation p.N580D 0.37 tolerated(0.11) benign(0.131) TCGA-AA-3492-01 1 19168280 19168280 C T TAS1R2 Missense_Mutation p.V512I 0.41 tolerated(0.22) benign(0.002) TCGA-AA-3492-01 1 196309550 196309550 C T KCNT2 Silent p.Q568Q 0.41 TCGA-AA-3492-01 1 196797226 196797226 G T CFHR1 Missense_Mutation p.V153L 0.68 tolerated(0.06) unknown(0) TCGA-AA-3492-01 1 197237406 197237406 G C CRB1 5'Flank 0.53 TCGA-AA-3492-01 1 197742060 197742060 G A DENND1B Missense_Mutation p.A7V 0.41 deleterious(0.03) benign(0.008) TCGA-AA-3492-01 1 198231755 198231755 A G NEK7 Missense_Mutation p.I83M 0.46 tolerated(0.08) possibly_damaging(0.685) TCGA-AA-3492-01 1 198828095 198828095 A C MIR181B1 RNA 0.28 TCGA-AA-3492-01 1 200014574 200014574 T - NR5A2 Frame_Shift_Del p.F110Lfs*14 0.25 TCGA-AA-3492-01 1 200878437 200878437 C T C1orf106 Missense_Mutation p.R291C 0.46 deleterious(0) possibly_damaging(0.8) TCGA-AA-3492-01 1 201183354 201183354 G - IGFN1 Frame_Shift_Del p.E2928Rfs*58 0.45 TCGA-AA-3492-01 1 201282490 201282490 G A PKP1 Missense_Mutation p.R168H 0.33 tolerated(0.09) possibly_damaging(0.863) TCGA-AA-3492-01 1 20141577 20141577 G T RNF186 Silent p.T6T 0.28 TCGA-AA-3492-01 1 201781602 201781602 C A NAV1 Silent p.T1678T 0.42 TCGA-AA-3492-01 1 201823756 201823756 C T IPO9 Nonsense_Mutation p.Q242* 0.43 TCGA-AA-3492-01 1 201869093 201869093 G A LMOD1 Missense_Mutation p.R350W 0.41 probably_damaging(0.945) TCGA-AA-3492-01 1 202724444 202724444 C A KDM5B Missense_Mutation p.W498L 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 1 202977894 202977894 A G TMEM183A Missense_Mutation p.H108R 0.39 tolerated(0.64) benign(0.002) TCGA-AA-3492-01 1 203185947 203185947 A C CHIT1 3'UTR 0.33 TCGA-AA-3492-01 1 20501587 20501587 G A PLA2G2C Missense_Mutation p.T31M 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 1 205031672 205031672 C T CNTN2 Silent p.Y405Y 0.30 TCGA-AA-3492-01 1 205225516 205225516 A C TMCC2 Intron 0.39 TCGA-AA-3492-01 1 206650063 206650064 - A IKBKE Frame_Shift_Ins p.A197Sfs*108 0.32 TCGA-AA-3492-01 1 206757875 206757875 C A RASSF5 Missense_Mutation p.P283T 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 1 206785771 206785771 G T EIF2D 5'UTR 0.25 TCGA-AA-3492-01 1 207228144 207228146 TGT - PFKFB2 In_Frame_Del 0.29 TCGA-AA-3492-01 1 207245751 207245752 TG - PFKFB2 3'UTR 0.35 TCGA-AA-3492-01 1 207782949 207782949 C T CR1 Missense_Mutation p.P2071S 0.27 deleterious(0.01) probably_damaging(0.932) TCGA-AA-3492-01 1 208200468 208200468 T C PLXNA2 3'UTR 1.00 TCGA-AA-3492-01 1 208252614 208252614 T C PLXNA2 Silent p.Q859Q 0.41 TCGA-AA-3492-01 1 20979407 20979407 C T DDOST Missense_Mutation p.D351N 0.08 tolerated(0.41) benign(0.014) TCGA-AA-3492-01 1 209797250 209797250 C T LAMB3 Missense_Mutation p.G691D 0.51 tolerated(0.33) benign(0.001) TCGA-AA-3492-01 1 212792490 212792490 G A ATF3 Intron 0.27 TCGA-AA-3492-01 1 214169835 214169835 C T PROX1 5'UTR 0.44 TCGA-AA-3492-01 1 216373058 216373058 G A USH2A Missense_Mutation p.A1241V 0.22 probably_damaging(0.967) TCGA-AA-3492-01 1 217856612 217856612 T C SPATA17 Missense_Mutation p.W102R 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 1 21889686 21889686 C T ALPL Silent p.T127T 0.38 TCGA-AA-3492-01 1 22168060 22168060 G T HSPG2 Silent p.A3100A 0.24 TCGA-AA-3492-01 1 22202854 22202854 G A HSPG2 Silent p.N957N 0.44 TCGA-AA-3492-01 1 22211641 22211642 - G HSPG2 Frame_Shift_Ins p.Q407Pfs*62 0.26 TCGA-AA-3492-01 1 222750869 222750869 T C TAF1A Missense_Mutation p.I174M 0.32 tolerated(0.11) benign(0.019) TCGA-AA-3492-01 1 224559024 224559024 T C CNIH4 Silent p.D97D 0.38 TCGA-AA-3492-01 1 224619238 224619240 GAG - WDR26 In_Frame_Del p.P189del 0.36 TCGA-AA-3492-01 1 226454022 226454022 A T LIN9 Silent p.P292P 0.45 TCGA-AA-3492-01 1 226923710 226923710 C T ITPKB Missense_Mutation p.A484T 0.47 tolerated_low_confidence(0.49) benign(0.001) TCGA-AA-3492-01 1 227261965 227261965 C T CDC42BPA Missense_Mutation p.A861T 0.17 tolerated(0.83) benign(0.004) TCGA-AA-3492-01 1 228559474 228559474 G A OBSCN Missense_Mutation p.G7956R 0.43 benign(0.439) TCGA-AA-3492-01 1 228560418 228560418 C T OBSCN Silent p.Y8270Y 0.38 TCGA-AA-3492-01 1 228564553 228564553 G A OBSCN Missense_Mutation p.A8630T 0.36 probably_damaging(0.988) TCGA-AA-3492-01 1 22928242 22928242 C T EPHA8 3'UTR 0.35 TCGA-AA-3492-01 1 22965429 22965429 C - C1QA Frame_Shift_Del p.L91Sfs*191 0.36 TCGA-AA-3492-01 1 229773645 229773647 AGG - URB2 In_Frame_Del p.G1096del 0.43 TCGA-AA-3492-01 1 230846185 230846185 C T AGT Missense_Mutation p.A138T 0.35 tolerated(0.32) benign(0.074) TCGA-AA-3492-01 1 230916384 230916384 A G CAPN9 Missense_Mutation p.S471G 0.11 deleterious(0) possibly_damaging(0.818) TCGA-AA-3492-01 1 231132885 231132885 G A ARV1 Missense_Mutation p.R231H 0.47 tolerated(0.11) possibly_damaging(0.81) TCGA-AA-3492-01 1 231374777 231374777 C T C1orf131 Silent p.K92K 0.37 TCGA-AA-3492-01 1 232615450 232615451 AG - SIPA1L2 Frame_Shift_Del p.T671Hfs*34 0.20 TCGA-AA-3492-01 1 232626742 232626742 G A SIPA1L2 Nonsense_Mutation p.R562* 0.43 TCGA-AA-3492-01 1 233135111 233135111 G A PCNXL2 Silent p.C1781C 0.34 TCGA-AA-3492-01 1 23395103 23395103 T C KDM1A Silent p.S417S 0.39 TCGA-AA-3492-01 1 23420002 23420002 C T LUZP1 Silent p.P251P 0.37 TCGA-AA-3492-01 1 234367293 234367293 C T SLC35F3 Silent p.G138G 0.36 TCGA-AA-3492-01 1 236433205 236433205 C A ERO1LB Missense_Mutation p.L64F 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 1 237755119 237755119 G A RYR2 Missense_Mutation p.R1414Q 0.32 benign(0.001) TCGA-AA-3492-01 1 237995906 237995906 G A RYR2 Missense_Mutation p.G4955R 0.32 probably_damaging(0.979) TCGA-AA-3492-01 1 241724026 241724028 AGA - KMO In_Frame_Del p.E143del 0.29 TCGA-AA-3492-01 1 24201098 24201098 A G CNR2 Missense_Mutation p.V337A 0.47 tolerated(0.17) benign(0.08) TCGA-AA-3492-01 1 243319677 243319677 T C CEP170 Missense_Mutation p.K1253E 0.25 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 1 245850755 245850755 C T KIF26B Silent p.L1490L 0.34 TCGA-AA-3492-01 1 246719906 246719906 A T TFB2M Missense_Mutation p.V225E 0.10 deleterious(0) possibly_damaging(0.761) TCGA-AA-3492-01 1 247492574 247492574 G A ZNF496 Missense_Mutation p.R103W 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 1 247587915 247587915 C A NLRP3 Silent p.A390A 0.29 TCGA-AA-3492-01 1 248402845 248402845 A G OR2M4 Silent p.V205V 0.36 TCGA-AA-3492-01 1 248436699 248436699 G C OR2T33 Missense_Mutation p.L140V 0.21 tolerated(0.1) benign(0.327) TCGA-AA-3492-01 1 24996685 24996685 C T SRRM1 Missense_Mutation p.A760V 0.34 unknown(0) TCGA-AA-3492-01 1 25245784 25245784 G A RUNX3 Missense_Mutation p.A178V 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 1 25617202 25617202 T A RHD Missense_Mutation p.L136M 0.36 tolerated(0.2) probably_damaging(0.999) TCGA-AA-3492-01 1 26136236 26136236 A G SEPN1 Missense_Mutation p.Q312R 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3492-01 1 27088723 27088723 G A ARID1A Missense_Mutation p.G778R 0.24 unknown(0) TCGA-AA-3492-01 1 27685945 27685945 C T MAP3K6 Silent p.R796R 0.49 TCGA-AA-3492-01 1 28285133 28285133 C T SMPDL3B Silent p.G384G 0.44 TCGA-AA-3492-01 1 29189631 29189631 G A OPRD1 Missense_Mutation p.A319T 0.50 deleterious(0) possibly_damaging(0.883) TCGA-AA-3492-01 1 29543138 29543138 G A MECR Missense_Mutation p.A79V 0.46 tolerated(0.07) possibly_damaging(0.779) TCGA-AA-3492-01 1 32120985 32120985 C A COL16A1 Missense_Mutation p.G1407V 0.43 unknown(0) TCGA-AA-3492-01 1 32138060 32138060 C T COL16A1 Missense_Mutation p.G1021D 0.39 unknown(0) TCGA-AA-3492-01 1 32210332 32210332 C A BAI2 Missense_Mutation p.G280V 0.21 tolerated(0.13) possibly_damaging(0.764) TCGA-AA-3492-01 1 32221928 32221928 C T BAI2 Silent p.P170P 0.36 TCGA-AA-3492-01 1 32832345 32832345 A G BSDC1 Intron 0.39 TCGA-AA-3492-01 1 33058547 33058549 TCA - ZBTB8A In_Frame_Del p.H6del 0.37 TCGA-AA-3492-01 1 33778150 33778150 G A A3GALT2 Missense_Mutation p.A50V 0.12 tolerated(0.05) benign(0.01) TCGA-AA-3492-01 1 35251447 35251447 C T GJB3 3'UTR 0.50 TCGA-AA-3492-01 1 35454474 35454474 T - ZMYM6 Frame_Shift_Del p.R737Dfs*2 0.34 TCGA-AA-3492-01 1 35916063 35916063 T C KIAA0319L Missense_Mutation p.T704A 0.30 tolerated(0.07) benign(0.079) TCGA-AA-3492-01 1 36752097 36752097 G A THRAP3 Missense_Mutation p.R89H 0.51 deleterious(0) unknown(0) TCGA-AA-3492-01 1 36859493 36859493 G A LSM10 Missense_Mutation p.R80C 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 1 38005912 38005912 G A SNIP1 Missense_Mutation p.R258W 0.10 deleterious(0) probably_damaging(0.973) TCGA-AA-3492-01 1 39338961 39338961 A G MYCBP Splice_Site p.X5_splice 0.62 TCGA-AA-3492-01 1 39776523 39776523 G A MACF1 Missense_Mutation p.A1046T 0.27 possibly_damaging(0.784) TCGA-AA-3492-01 1 39879309 39879309 G A KIAA0754 Silent p.V988V 0.20 TCGA-AA-3492-01 1 39934366 39934366 C T MACF1 Missense_Mutation p.A5219V 0.51 possibly_damaging(0.686) TCGA-AA-3492-01 1 40041518 40041518 G A PABPC4 Missense_Mutation p.P36S 0.28 tolerated(0.06) possibly_damaging(0.462) TCGA-AA-3492-01 1 40226106 40226106 G T BMP8B Silent p.A398A 0.50 TCGA-AA-3492-01 1 40432535 40432535 G A MFSD2A Silent p.R299R 0.32 TCGA-AA-3492-01 1 40982051 40982051 A G EXO5 3'Flank 0.51 TCGA-AA-3492-01 1 41466760 41466760 C T CTPS1 Silent p.H355H 0.50 TCGA-AA-3492-01 1 43916046 43916046 G A SZT2 Silent p.Q3341Q 0.41 TCGA-AA-3492-01 1 44084400 44084400 C T PTPRF Missense_Mutation p.R1491C 0.17 deleterious(0) possibly_damaging(0.884) TCGA-AA-3492-01 1 44432189 44432189 G - IPO13 Intron 0.34 TCGA-AA-3492-01 1 45805604 45805604 G A MUTYH Intron 0.33 TCGA-AA-3492-01 1 45973026 45973026 A - MMACHC Splice_Site p.X28_splice 0.25 TCGA-AA-3492-01 1 46083204 46083204 G A NASP Missense_Mutation p.G743R 0.37 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 1 46083244 46083244 C T NASP Missense_Mutation p.S756L 0.29 tolerated_low_confidence(0.11) benign(0.003) TCGA-AA-3492-01 1 46656479 46656479 A G POMGNT1 Intron 0.24 TCGA-AA-3492-01 1 47583591 47583591 A - CYP4Z1 Frame_Shift_Del p.V504Ffs*36 0.29 TCGA-AA-3492-01 1 51829571 51829571 C T EPS15 Missense_Mutation p.G776R 0.38 deleterious(0.01) possibly_damaging(0.888) TCGA-AA-3492-01 1 52238345 52238345 G A OSBPL9 Missense_Mutation p.V384I 0.42 tolerated(0.1) probably_damaging(0.997) TCGA-AA-3492-01 1 52256275 52256275 C A NRD1 Missense_Mutation p.G1101V 0.40 deleterious(0.01) probably_damaging(0.957) TCGA-AA-3492-01 1 52306069 52306069 T A NRD1 Missense_Mutation p.E153D 0.25 tolerated_low_confidence(0.4) benign(0) TCGA-AA-3492-01 1 52704708 52704708 A G ZFYVE9 Missense_Mutation p.D540G 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.488) TCGA-AA-3492-01 1 53543377 53543377 C - PODN Frame_Shift_Del p.P303Rfs*7 0.30 TCGA-AA-3492-01 1 54291559 54291559 A - NDC1 Frame_Shift_Del p.F169Sfs*3 0.30 TCGA-AA-3492-01 1 55062996 55062996 G A ACOT11 Silent p.E224E 0.20 TCGA-AA-3492-01 1 55273301 55273301 A G C1orf177 Missense_Mutation p.T99A 0.39 tolerated(0.42) benign(0.02) TCGA-AA-3492-01 1 55457654 55457654 G A TMEM61 Missense_Mutation p.A171T 0.39 tolerated(0.35) benign(0.037) TCGA-AA-3492-01 1 55457763 55457763 G A TMEM61 Missense_Mutation p.R207Q 0.36 tolerated_low_confidence(0.54) benign(0.006) TCGA-AA-3492-01 1 56962115 56962115 T G PPAP2B 3'UTR 0.44 TCGA-AA-3492-01 1 57157094 57157094 T - PRKAA2 Frame_Shift_Del p.F90Lfs*3 0.28 TCGA-AA-3492-01 1 58999622 58999622 T C OMA1 Intron 0.43 TCGA-AA-3492-01 1 61554085 61554085 A - NFIA Frame_Shift_Del p.K144Nfs*36 0.35 TCGA-AA-3492-01 1 62253579 62253580 - C INADL Frame_Shift_Ins p.A338Cfs*20 0.35 TCGA-AA-3492-01 1 62672556 62672556 A G L1TD1 Missense_Mutation p.T86A 0.40 tolerated(0.34) unknown(0) TCGA-AA-3492-01 1 64605902 64605902 G A ROR1 Missense_Mutation p.V241I 0.45 tolerated(0.25) benign(0.005) TCGA-AA-3492-01 1 6522128 6522128 C T TNFRSF25 Missense_Mutation p.G293D 0.43 tolerated(0.11) benign(0.018) TCGA-AA-3492-01 1 6535115 6535117 CTT - PLEKHG5 In_Frame_Del p.K177del 0.42 TCGA-AA-3492-01 1 66036485 66036485 G T LEPR Missense_Mutation p.D124Y 0.53 deleterious(0.01) possibly_damaging(0.466) TCGA-AA-3492-01 1 6653694 6653694 C T KLHL21 Missense_Mutation p.V509I 0.44 deleterious(0.02) possibly_damaging(0.747) TCGA-AA-3492-01 1 67358936 67358936 G T WDR78 Missense_Mutation p.P169H 0.30 deleterious(0.01) possibly_damaging(0.682) TCGA-AA-3492-01 1 68903930 68903931 - T RPE65 Frame_Shift_Ins p.N356Kfs*9 0.28 TCGA-AA-3492-01 1 70144107 70144107 A G LRRC7 Missense_Mutation p.R16G 0.33 deleterious_low_confidence(0) benign(0.152) TCGA-AA-3492-01 1 70687461 70687461 C T SRSF11 Nonsense_Mutation p.Q48* 0.46 TCGA-AA-3492-01 1 71533328 71533328 A - ZRANB2 Intron 0.26 TCGA-AA-3492-01 1 75037366 75037366 A G C1orf173 Missense_Mutation p.L1343P 0.35 tolerated(0.3) benign(0.037) TCGA-AA-3492-01 1 75190490 75190491 TC - CRYZ Frame_Shift_Del p.K6Vfs*6 0.40 TCGA-AA-3492-01 1 75688058 75688058 T C SLC44A5 Missense_Mutation p.K358R 0.34 tolerated(0.16) benign(0.168) TCGA-AA-3492-01 1 762205 762205 T - LINC00115 RNA 0.28 TCGA-AA-3492-01 1 76387915 76387916 - T ASB17 Frame_Shift_Ins p.N177Kfs*21 0.32 TCGA-AA-3492-01 1 7792655 7792655 C T CAMTA1 Missense_Mutation p.A1021V 0.42 tolerated(0.25) benign(0.008) TCGA-AA-3492-01 1 7798082 7798082 C T CAMTA1 Missense_Mutation p.P1241L 0.62 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3492-01 1 78098546 78098546 C T ZZZ3 Missense_Mutation p.R165Q 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.509) TCGA-AA-3492-01 1 78338701 78338701 T - FAM73A Frame_Shift_Del p.F527Lfs*15 0.30 TCGA-AA-3492-01 1 78340863 78340863 A - FAM73A 3'UTR 0.42 TCGA-AA-3492-01 1 78398877 78398877 A - NEXN Intron 0.33 TCGA-AA-3492-01 1 7844891 7844891 G A PER3 5'UTR 0.36 TCGA-AA-3492-01 1 8025476 8025476 A - PARK7 Frame_Shift_Del p.E64Rfs*25 0.29 TCGA-AA-3492-01 1 8390851 8390851 A T SLC45A1 Missense_Mutation p.D433V 0.21 tolerated(0.2) benign(0.15) TCGA-AA-3492-01 1 8418524 8418525 - G RERE Frame_Shift_Ins p.T1358Dfs*37 0.28 TCGA-AA-3492-01 1 8420871 8420871 T A RERE Missense_Mutation p.Q899L 0.35 unknown(0) TCGA-AA-3492-01 1 84394872 84394872 G A TTLL7 Silent p.D363D 0.33 TCGA-AA-3492-01 1 85121658 85121658 T C SSX2IP Missense_Mutation p.T416A 0.36 tolerated(0.16) possibly_damaging(0.507) TCGA-AA-3492-01 1 85648754 85648754 C T SYDE2 Missense_Mutation p.R524Q 0.38 deleterious(0.04) possibly_damaging(0.897) TCGA-AA-3492-01 1 86959938 86959938 G A CLCA1 Silent p.A583A 0.40 TCGA-AA-3492-01 1 86965736 86965736 T - CLCA1 3'UTR 0.28 TCGA-AA-3492-01 1 90460797 90460797 G A ZNF326 5'UTR 0.58 TCGA-AA-3492-01 1 90473101 90473101 A G ZNF326 Missense_Mutation p.Y136C 0.41 deleterious(0.01) probably_damaging(0.984) TCGA-AA-3492-01 1 91813021 91813021 C T HFM1 Missense_Mutation p.G740E 0.34 tolerated(0.08) benign(0.043) TCGA-AA-3492-01 1 92713460 92713460 A G GLMN Silent p.Y520Y 0.47 TCGA-AA-3492-01 1 9324274 9324274 C T H6PD Silent p.T574T 0.41 TCGA-AA-3492-01 1 94017814 94017814 T - FNBP1L Intron 0.34 TCGA-AA-3492-01 1 97278400 97278400 C T PTBP2 Missense_Mutation p.P435L 0.43 deleterious(0.04) possibly_damaging(0.68) TCGA-AA-3492-01 1 989877 989877 G A AGRN Missense_Mutation p.G1976S 0.46 deleterious(0.01) probably_damaging(1) TCGA-AA-3492-01 1 99470051 99470051 G A LPPR5 Silent p.D59D 0.36 TCGA-AA-3492-01 1 99470148 99470148 G A LPPR5 Missense_Mutation p.A27V 0.37 tolerated(0.09) benign(0.21) TCGA-AA-3492-01 1 99764662 99764662 G A LPPR4 Missense_Mutation p.A204T 0.09 tolerated(0.41) benign(0.014) TCGA-AA-3492-01 20 10386114 10386114 G A MKKS Silent p.G498G 0.33 TCGA-AA-3492-01 20 1210605 1210605 G A RAD21L1 Missense_Mutation p.A76T 0.30 deleterious(0) possibly_damaging(0.897) TCGA-AA-3492-01 20 1291053 1291054 - C SDCBP2 3'UTR 0.29 TCGA-AA-3492-01 20 1559008 1559008 C T RP4-576H24.4 Missense_Mutation p.A136T 0.35 tolerated(0.05) benign(0.015) TCGA-AA-3492-01 20 16730581 16730581 G A OTOR Missense_Mutation p.V97M 0.48 deleterious(0) benign(0.344) TCGA-AA-3492-01 20 17462334 17462334 G A PCSK2 Silent p.T512T 0.35 TCGA-AA-3492-01 20 18295805 18295805 C - ZNF133 Frame_Shift_Del p.W105Gfs*81 0.37 TCGA-AA-3492-01 20 18296642 18296642 G A ZNF133 Missense_Mutation p.A382T 0.43 deleterious(0.02) possibly_damaging(0.845) TCGA-AA-3492-01 20 18471047 18471047 C T RBBP9 Missense_Mutation p.R109H 0.29 deleterious(0.02) benign(0.01) TCGA-AA-3492-01 20 19566119 19566119 C T SLC24A3 Silent p.G181G 0.40 TCGA-AA-3492-01 20 21687050 21687050 C A PAX1 Intron 0.50 TCGA-AA-3492-01 20 2542587 2542587 A - TMC2 Frame_Shift_Del p.K164Rfs*18 0.25 TCGA-AA-3492-01 20 25457616 25457616 G A NINL Missense_Mutation p.R771C 0.24 deleterious(0.01) benign(0.265) TCGA-AA-3492-01 20 25829495 25829496 - G FAM182B 5'UTR 0.09 TCGA-AA-3492-01 20 2732416 2732416 C - EBF4 Frame_Shift_Del p.E361Rfs*9 0.29 TCGA-AA-3492-01 20 2795849 2795849 C T C20orf141 Missense_Mutation p.P7S 0.11 tolerated_low_confidence(0.24) possibly_damaging(0.803) TCGA-AA-3492-01 20 3007828 3007828 C T PTPRA Silent p.N590N 0.30 TCGA-AA-3492-01 20 31997969 31997969 G A SNTA1 Silent p.A403A 0.34 TCGA-AA-3492-01 20 3214821 3214821 G T SLC4A11 Missense_Mutation p.A187D 0.43 tolerated(0.14) possibly_damaging(0.66) TCGA-AA-3492-01 20 32255992 32255992 C T ACTL10 Missense_Mutation p.A230V 0.27 tolerated(0.09) benign(0.197) TCGA-AA-3492-01 20 33591340 33591340 C T TRPC4AP Missense_Mutation p.R710Q 0.45 tolerated(1) benign(0.005) TCGA-AA-3492-01 20 33703203 33703204 - A EDEM2 3'UTR 0.36 TCGA-AA-3492-01 20 35443750 35443750 C T SOGA1 Missense_Mutation p.D699N 0.58 tolerated(0.23) possibly_damaging(0.517) TCGA-AA-3492-01 20 35696404 35696404 C T RBL1 Missense_Mutation p.R159Q 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 20 35748190 35748190 G A MROH8 Missense_Mutation p.R788C 0.44 deleterious(0.02) benign(0.187) TCGA-AA-3492-01 20 37357358 37357358 C T SLC32A1 3'UTR 0.56 TCGA-AA-3492-01 20 37570738 37570738 T C FAM83D Missense_Mutation p.M237T 0.48 tolerated(0.53) benign(0.085) TCGA-AA-3492-01 20 37580839 37580839 C A FAM83D Silent p.S508S 0.45 TCGA-AA-3492-01 20 37634881 37634881 C T DHX35 Silent p.Y368Y 0.49 TCGA-AA-3492-01 20 3784181 3784181 G A CDC25B Missense_Mutation p.R496H 0.37 deleterious(0.01) benign(0.175) TCGA-AA-3492-01 20 39977274 39977274 G A LPIN3 Missense_Mutation p.G102S 0.23 tolerated(0.07) benign(0.008) TCGA-AA-3492-01 20 39980497 39980497 A G LPIN3 Missense_Mutation p.D380G 0.50 tolerated(0.47) benign(0.002) TCGA-AA-3492-01 20 40033322 40033322 C T CHD6 Missense_Mutation p.E2687K 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.638) TCGA-AA-3492-01 20 40827904 40827904 T C PTPRT Missense_Mutation p.S823G 0.44 tolerated(0.05) possibly_damaging(0.708) TCGA-AA-3492-01 20 40827937 40827937 T A PTPRT Missense_Mutation p.S812C 0.48 deleterious(0) possibly_damaging(0.527) TCGA-AA-3492-01 20 40944441 40944441 G T PTPRT Nonsense_Mutation p.Y687* 0.37 TCGA-AA-3492-01 20 41306741 41306741 C T PTPRT Nonsense_Mutation p.W306* 0.41 TCGA-AA-3492-01 20 42089382 42089382 A - SRSF6 Frame_Shift_Del p.G240Afs*50 0.23 TCGA-AA-3492-01 20 42143191 42143191 C T L3MBTL1 Intron 0.24 TCGA-AA-3492-01 20 42195104 42195105 - C SGK2 Frame_Shift_Ins p.E53Rfs*4 0.32 TCGA-AA-3492-01 20 42275751 42275751 G A IFT52 3'UTR 0.53 TCGA-AA-3492-01 20 43926595 43926595 C T MATN4 Silent p.T514T 0.11 TCGA-AA-3492-01 20 43940237 43940238 - C RBPJL Frame_Shift_Ins p.P92Afs*44 0.29 TCGA-AA-3492-01 20 44469834 44469834 G A SNX21 Missense_Mutation p.R335H 0.41 tolerated(0.07) benign(0.01) TCGA-AA-3492-01 20 44507088 44507088 A G ZSWIM3 Missense_Mutation p.M631V 0.29 tolerated(0.05) benign(0.053) TCGA-AA-3492-01 20 44512462 44512462 G A ZSWIM1 Missense_Mutation p.D411N 0.40 tolerated(0.1) benign(0.003) TCGA-AA-3492-01 20 44512622 44512622 G T ZSWIM1 Missense_Mutation p.R464L 0.42 tolerated(0.16) benign(0.008) TCGA-AA-3492-01 20 44596429 44596429 C T ZNF335 Missense_Mutation p.R253Q 0.51 deleterious(0) possibly_damaging(0.703) TCGA-AA-3492-01 20 44680422 44680422 G - SLC12A5 Frame_Shift_Del p.L789Cfs*38 0.33 TCGA-AA-3492-01 20 45801430 45801430 C T EYA2 Silent p.H371H 0.33 TCGA-AA-3492-01 20 46291812 46291812 A G SULF2 Splice_Site p.X790_splice 0.32 TCGA-AA-3492-01 20 46365634 46365634 C T SULF2 Silent p.A76A 0.35 TCGA-AA-3492-01 20 47864918 47864918 T C ZNFX1 Missense_Mutation p.H1548R 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3492-01 20 47991123 47991123 C T KCNB1 Missense_Mutation p.R325Q 0.38 tolerated(0.08) probably_damaging(0.915) TCGA-AA-3492-01 20 48699348 48699348 A G UBE2V1 Missense_Mutation p.M157T 0.40 tolerated(0.12) benign(0.081) TCGA-AA-3492-01 20 49195779 49195779 G A PTPN1 Silent p.G259G 0.19 TCGA-AA-3492-01 20 49366373 49366373 G A PARD6B Missense_Mutation p.R156H 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 20 49493123 49493123 G A BCAS4 3'UTR 0.36 TCGA-AA-3492-01 20 5165556 5165556 T G CDS2 Missense_Mutation p.F242V 0.19 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 20 5167482 5167482 C T CDS2 Silent p.G326G 0.21 TCGA-AA-3492-01 20 5169713 5169713 A - CDS2 Frame_Shift_Del p.T329Rfs*60 0.26 TCGA-AA-3492-01 20 51872445 51872445 C - TSHZ2 Frame_Shift_Del p.M819* 0.36 TCGA-AA-3492-01 20 52773992 52773992 C T CYP24A1 Missense_Mutation p.V457I 0.39 tolerated(1) benign(0.004) TCGA-AA-3492-01 20 54978783 54978783 A T CSTF1 Nonstop_Mutation p.*432Cext*25 0.33 TCGA-AA-3492-01 20 55803379 55803379 C T BMP7 Missense_Mutation p.E173K 0.47 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 20 56137827 56137827 C T PCK1 Missense_Mutation p.T161M 0.62 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 20 56137879 56137879 G A PCK1 Silent p.T178T 0.22 TCGA-AA-3492-01 20 57251537 57251537 T C STX16 3'UTR 0.55 TCGA-AA-3492-01 20 57415145 57415145 G A RP4-806M20.3 5'Flank 0.44 TCGA-AA-3492-01 20 57768661 57768661 G A ZNF831 Missense_Mutation p.G863R 0.27 tolerated(0.7) benign(0.116) TCGA-AA-3492-01 20 58482441 58482441 T - SYCP2 Frame_Shift_Del p.V338Yfs*8 0.30 TCGA-AA-3492-01 20 60587959 60587959 A G TAF4 Missense_Mutation p.V518A 0.10 benign(0.344) TCGA-AA-3492-01 20 60701443 60701443 G A LSM14B Silent p.P125P 0.54 TCGA-AA-3492-01 20 60791895 60791895 G A HRH3 Missense_Mutation p.P169S 0.48 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 20 60886061 60886061 G A LAMA5 Missense_Mutation p.A3393V 0.28 benign(0.007) TCGA-AA-3492-01 20 60913604 60913604 C T LAMA5 Missense_Mutation p.G513E 0.23 probably_damaging(0.999) TCGA-AA-3492-01 20 61444401 61444401 C T OGFR Silent p.T478T 0.29 TCGA-AA-3492-01 20 62038564 62038564 G A KCNQ2 Silent p.G684G 0.24 TCGA-AA-3492-01 20 62119748 62119748 G A EEF1A2 Missense_Mutation p.T432M 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.564) TCGA-AA-3492-01 20 62168549 62168549 T G PTK6 Missense_Mutation p.K40T 0.33 tolerated(0.17) possibly_damaging(0.72) TCGA-AA-3492-01 20 62366831 62366831 C T ZGPAT Missense_Mutation p.R458W 0.40 deleterious(0) possibly_damaging(0.816) TCGA-AA-3492-01 20 62421673 62421673 G A ZBTB46 Silent p.I146I 0.33 TCGA-AA-3492-01 20 62595267 62595267 C T ZNF512B Splice_Site p.X494_splice 0.43 TCGA-AA-3492-01 20 62694703 62694703 G A TCEA2 Missense_Mutation p.R13Q 0.47 deleterious(0.01) benign(0.295) TCGA-AA-3492-01 20 62871728 62871728 A G MYT1 Missense_Mutation p.Y1098C 0.52 benign(0.071) TCGA-AA-3492-01 21 10951358 10951358 G A TPTE Silent p.S118S 0.18 TCGA-AA-3492-01 21 15352452 15352452 C T ANKRD20A11P 5'Flank 0.45 TCGA-AA-3492-01 21 15537625 15537625 G A LIPI Missense_Mutation p.P295S 0.37 deleterious(0.02) possibly_damaging(0.586) TCGA-AA-3492-01 21 22656612 22656612 C T NCAM2 Missense_Mutation p.R77W 0.40 deleterious(0.03) benign(0.332) TCGA-AA-3492-01 21 30715234 30715234 G A BACH1 3'UTR 0.43 TCGA-AA-3492-01 21 31066351 31066351 A G GRIK1 Silent p.P50P 0.44 TCGA-AA-3492-01 21 31802950 31802950 C T KRTAP13-4 Silent p.G119G 0.27 TCGA-AA-3492-01 21 31812902 31812902 C A KRTAP15-1 Missense_Mutation p.P86H 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 21 32007739 32007739 C T KRTAP20-2 Missense_Mutation p.P53S 0.08 unknown(0) TCGA-AA-3492-01 21 32638473 32638473 C T TIAM1 Missense_Mutation p.M272I 0.47 tolerated(0.87) benign(0.001) TCGA-AA-3492-01 21 33694172 33694172 C T URB1 Missense_Mutation p.R1808H 0.27 deleterious(0.03) possibly_damaging(0.557) TCGA-AA-3492-01 21 33949091 33949091 C - TCP10L Frame_Shift_Del p.G214Vfs*26 0.29 TCGA-AA-3492-01 21 34018020 34018020 C - SYNJ1 Frame_Shift_Del p.P1149Rfs*44 0.28 TCGA-AA-3492-01 21 34401242 34401242 C T OLIG2 3'UTR 0.17 TCGA-AA-3492-01 21 34861220 34861220 G A DNAJC28 Missense_Mutation p.R161C 0.42 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 21 34923269 34923269 G A SON Missense_Mutation p.A578T 0.35 possibly_damaging(0.483) TCGA-AA-3492-01 21 34929956 34929956 G A SON Intron 0.44 TCGA-AA-3492-01 21 35237469 35237469 G A ITSN1 Missense_Mutation p.R1302H 0.23 deleterious(0.01) probably_damaging(0.94) TCGA-AA-3492-01 21 35821696 35821696 G A KCNE1 Silent p.N79N 0.21 TCGA-AA-3492-01 21 38853079 38853079 T C DYRK1A Missense_Mutation p.M156T 0.36 tolerated(0.12) benign(0.012) TCGA-AA-3492-01 21 41711086 41711086 C T DSCAM Silent p.S489S 0.42 TCGA-AA-3492-01 21 42839672 42839672 G A TMPRSS2 Nonsense_Mutation p.R523* 0.34 TCGA-AA-3492-01 21 43539380 43539380 G A UMODL1 Missense_Mutation p.A1007T 0.27 deleterious(0.03) possibly_damaging(0.695) TCGA-AA-3492-01 21 43815520 43815520 C - TMPRSS3 Frame_Shift_Del p.E3Kfs*22 0.37 TCGA-AA-3492-01 21 44275856 44275856 C T WDR4 Missense_Mutation p.G221D 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 21 44324236 44324236 G A NDUFV3 Missense_Mutation p.E372K 0.44 deleterious(0.01) possibly_damaging(0.847) TCGA-AA-3492-01 21 45514004 45514004 C - TRAPPC10 Frame_Shift_Del p.P1021Lfs*23 0.37 TCGA-AA-3492-01 21 45655322 45655322 T C ICOSLG Missense_Mutation p.N177S 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-AA-3492-01 21 45733536 45733536 C T PFKL Silent p.F203F 0.38 TCGA-AA-3492-01 21 45877119 45877119 G A LRRC3 Missense_Mutation p.V198I 0.43 tolerated(0.39) benign(0.004) TCGA-AA-3492-01 21 45978002 45978002 G A KRTAP10-3 Silent p.C199C 0.40 TCGA-AA-3492-01 21 46309311 46309311 C T ITGB2 Missense_Mutation p.R586Q 0.37 tolerated(0.56) benign(0.001) TCGA-AA-3492-01 21 46310004 46310004 G A ITGB2 Nonsense_Mutation p.Q516* 0.32 TCGA-AA-3492-01 21 46914785 46914785 G A COL18A1 Missense_Mutation p.G977R 0.43 probably_damaging(1) TCGA-AA-3492-01 21 46925152 46925152 C - COL18A1 Frame_Shift_Del p.P1173Qfs*38 0.36 TCGA-AA-3492-01 21 47423826 47423826 G A COL6A1 Missense_Mutation p.V996M 0.35 deleterious(0.03) probably_damaging(0.947) TCGA-AA-3492-01 21 47766067 47766067 C T PCNT Missense_Mutation p.A222V 0.27 benign(0.145) TCGA-AA-3492-01 21 48080763 48080764 - T PRMT2 Frame_Shift_Ins p.S286Ffs*6 0.12 TCGA-AA-3492-01 22 17589466 17589466 G A IL17RA Missense_Mutation p.A453T 0.55 deleterious(0.02) possibly_damaging(0.894) TCGA-AA-3492-01 22 17590544 17590544 A G IL17RA Missense_Mutation p.E812G 0.33 tolerated(0.07) benign(0.132) TCGA-AA-3492-01 22 18232875 18232875 C T BID Missense_Mutation p.C49Y 0.50 deleterious(0.03) possibly_damaging(0.594) TCGA-AA-3492-01 22 19365554 19365554 A G HIRA Missense_Mutation p.L484P 0.22 tolerated(0.16) possibly_damaging(0.526) TCGA-AA-3492-01 22 19484960 19484960 G A CDC45 Missense_Mutation p.D247N 0.36 tolerated(0.05) possibly_damaging(0.84) TCGA-AA-3492-01 22 20761208 20761208 C - ZNF74 Frame_Shift_Del p.R631Efs*84 0.34 TCGA-AA-3492-01 22 20786121 20786121 C T SCARF2 Missense_Mutation p.G82D 0.55 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 22 21083750 21083750 T C PI4KA Silent p.S1511S 0.48 TCGA-AA-3492-01 22 21088700 21088700 G - PI4KA Frame_Shift_Del p.H1295Tfs*36 0.25 TCGA-AA-3492-01 22 21098936 21098936 G A PI4KA Missense_Mutation p.R1146C 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 22 21288369 21288369 A G CRKL Missense_Mutation p.H205R 0.27 tolerated(0.67) benign(0.348) TCGA-AA-3492-01 22 21330018 21330018 C T AIFM3 Missense_Mutation p.P253L 0.31 deleterious(0.03) benign(0.063) TCGA-AA-3492-01 22 21330799 21330799 C T AIFM3 Silent p.N334N 0.35 TCGA-AA-3492-01 22 22673091 22673091 C T IGLV5-52 Missense_Mutation p.A2V 0.44 tolerated(0.05) benign(0.105) TCGA-AA-3492-01 22 23230352 23230352 G A IGLL5 Missense_Mutation p.R40H 0.31 tolerated_low_confidence(0.4) benign(0.001) TCGA-AA-3492-01 22 24087086 24087086 G - ZNF70 Frame_Shift_Del p.P81Qfs*26 0.36 TCGA-AA-3492-01 22 24106989 24106989 G A C22orf15 Missense_Mutation p.R112H 0.60 tolerated(0.13) benign(0.011) TCGA-AA-3492-01 22 24125852 24125852 A G AP000349.1 Silent p.P98P 0.45 TCGA-AA-3492-01 22 24181193 24181193 C T DERL3 5'UTR 0.65 TCGA-AA-3492-01 22 24567726 24567726 C T CABIN1 Nonsense_Mutation p.R1935* 0.13 TCGA-AA-3492-01 22 24567915 24567915 C T CABIN1 Missense_Mutation p.R1998W 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.487) TCGA-AA-3492-01 22 26688760 26688760 G A SEZ6L Silent p.T161T 0.45 TCGA-AA-3492-01 22 26688771 26688771 G A SEZ6L Missense_Mutation p.G165D 0.21 tolerated_low_confidence(0.66) benign(0.034) TCGA-AA-3492-01 22 28195490 28195490 G T MN1 Missense_Mutation p.P348T 0.55 benign(0.144) TCGA-AA-3492-01 22 28195561 28195561 G T MN1 Missense_Mutation p.P324H 0.36 possibly_damaging(0.575) TCGA-AA-3492-01 22 28306975 28306975 C T PITPNB Silent p.T58T 0.34 TCGA-AA-3492-01 22 28379603 28379603 C T TTC28 Missense_Mutation p.G2018R 0.36 tolerated_low_confidence(1) benign(0) TCGA-AA-3492-01 22 29628375 29628375 C T EMID1 Silent p.A269A 0.26 TCGA-AA-3492-01 22 29695765 29695765 G - EWSR1 Frame_Shift_Del p.P627Lfs*4 0.26 TCGA-AA-3492-01 22 29704259 29704259 G A GAS2L1 Missense_Mutation p.G55E 0.22 tolerated(1) probably_damaging(1) TCGA-AA-3492-01 22 29907126 29907126 G A THOC5 Missense_Mutation p.P653S 0.26 tolerated(0.05) possibly_damaging(0.641) TCGA-AA-3492-01 22 30218370 30218370 G A ASCC2 Silent p.C165C 0.36 TCGA-AA-3492-01 22 30770065 30770065 G A CCDC157 Missense_Mutation p.E553K 0.36 deleterious(0.03) benign(0.011) TCGA-AA-3492-01 22 30823313 30823313 G A MTFP1 Nonsense_Mutation p.W117* 0.38 TCGA-AA-3492-01 22 31486952 31486953 - C SMTN Frame_Shift_Ins p.L317Pfs*24 0.27 TCGA-AA-3492-01 22 31489636 31489636 G A SMTN Intron 0.40 TCGA-AA-3492-01 22 31491425 31491425 G T SMTN Missense_Mutation p.G590V 0.24 tolerated(0.07) benign(0.371) TCGA-AA-3492-01 22 31532700 31532700 C G PLA2G3 Missense_Mutation p.A429P 0.41 deleterious(0.05) probably_damaging(0.966) TCGA-AA-3492-01 22 31658197 31658197 C - LIMK2 Frame_Shift_Del p.V191Sfs*23 0.13 TCGA-AA-3492-01 22 31741262 31741262 G A PATZ1 Silent p.I109I 0.42 TCGA-AA-3492-01 22 32046691 32046691 G A PISD Missense_Mutation p.R47C 0.36 tolerated_low_confidence(0.18) benign(0.169) TCGA-AA-3492-01 22 32352867 32352867 C T YWHAH 3'UTR 0.36 TCGA-AA-3492-01 22 36545176 36545176 T - APOL3 Intron 0.49 TCGA-AA-3492-01 22 36587617 36587617 C T APOL4 Missense_Mutation p.A187T 0.58 tolerated(1) benign(0.006) TCGA-AA-3492-01 22 37603089 37603089 C T SSTR3 Missense_Mutation p.E252K 0.36 deleterious(0.01) probably_damaging(1) TCGA-AA-3492-01 22 38153805 38153805 G A TRIOBP Missense_Mutation p.R1958Q 0.55 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3492-01 22 38155255 38155255 C T TRIOBP Missense_Mutation p.P2103L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3492-01 22 38168681 38168681 G A TRIOBP Missense_Mutation p.R2337Q 0.38 tolerated(0.23) benign(0.255) TCGA-AA-3492-01 22 38212603 38212603 G A GCAT Missense_Mutation p.V406M 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 22 38382307 38382308 TC - SOX10 5'Flank 0.39 TCGA-AA-3492-01 22 38509561 38509561 C T PLA2G6 Missense_Mutation p.S712N 0.44 deleterious(0.04) probably_damaging(0.928) TCGA-AA-3492-01 22 38690230 38690230 G A CSNK1E Missense_Mutation p.S368L 0.50 deleterious_low_confidence(0.04) possibly_damaging(0.885) TCGA-AA-3492-01 22 39134258 39134258 C A SUN2 Missense_Mutation p.D675Y 0.10 deleterious(0) possibly_damaging(0.8) TCGA-AA-3492-01 22 39145787 39145787 C T SUN2 Missense_Mutation p.V221I 0.38 deleterious(0.01) possibly_damaging(0.883) TCGA-AA-3492-01 22 39497299 39497299 G A APOBEC3H Missense_Mutation p.E70K 0.47 tolerated(0.89) benign(0.006) TCGA-AA-3492-01 22 39883451 39883451 C A MGAT3 Silent p.T33T 0.43 TCGA-AA-3492-01 22 40045772 40045772 G C CACNA1I Missense_Mutation p.E612Q 0.55 tolerated(0.48) benign(0.19) TCGA-AA-3492-01 22 40140187 40140187 G T ENTHD1 Missense_Mutation p.L441M 0.12 tolerated(0.1) benign(0.214) TCGA-AA-3492-01 22 40814616 40814616 A G MKL1 Missense_Mutation p.I609T 0.43 tolerated(0.62) benign(0.001) TCGA-AA-3492-01 22 40859255 40859255 C T MKL1 5'UTR 0.40 TCGA-AA-3492-01 22 41258071 41258071 G C DNAJB7 5'UTR 0.40 TCGA-AA-3492-01 22 41904042 41904042 C T ACO2 Missense_Mutation p.R141C 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.549) TCGA-AA-3492-01 22 41922447 41922447 G A ACO2 Missense_Mutation p.R648H 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3492-01 22 42090313 42090313 T C C22orf46 3'UTR 0.34 TCGA-AA-3492-01 22 42141906 42141906 A G MEI1 Missense_Mutation p.Q519R 0.33 tolerated(0.07) possibly_damaging(0.895) TCGA-AA-3492-01 22 42383705 42383705 C T SEPT3 Missense_Mutation p.R165C 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3492-01 22 42906694 42906694 G A RRP7A 3'UTR 0.30 TCGA-AA-3492-01 22 43278202 43278202 C G PACSIN2 Missense_Mutation p.W298C 0.24 deleterious(0) possibly_damaging(0.88) TCGA-AA-3492-01 22 44285680 44285681 - C PNPLA5 Frame_Shift_Ins p.E164Gfs*43 0.28 TCGA-AA-3492-01 22 44586474 44586474 G A PARVG Silent p.V144V 0.60 TCGA-AA-3492-01 22 44692578 44692578 C T KIAA1644 Silent p.T85T 0.49 TCGA-AA-3492-01 22 45755727 45755727 T C SMC1B Missense_Mutation p.I940M 0.56 deleterious(0) probably_damaging(0.972) TCGA-AA-3492-01 22 46319143 46319143 A G WNT7B Missense_Mutation p.W215R 0.45 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 22 46611129 46611129 G A PPARA Missense_Mutation p.V90M 0.14 tolerated(0.11) benign(0.06) TCGA-AA-3492-01 22 50515324 50515324 G A MLC1 Silent p.S181S 0.31 TCGA-AA-3492-01 22 50523197 50523197 G - MLC1 Frame_Shift_Del p.C46Afs*12 0.38 TCGA-AA-3492-01 22 50528879 50528879 C T MOV10L1 Intron 0.42 TCGA-AA-3492-01 22 50719864 50719864 A G PLXNB2 Missense_Mutation p.V1196A 0.21 tolerated(0.1) benign(0.05) TCGA-AA-3492-01 22 50727558 50727558 C T PLXNB2 Missense_Mutation p.S361N 0.45 tolerated(0.57) benign(0.009) TCGA-AA-3492-01 22 50898756 50898756 G - SBF1 Frame_Shift_Del p.S1077Afs*28 0.29 TCGA-AA-3492-01 22 51009669 51009669 C T CPT1B Missense_Mutation p.R598Q 0.50 deleterious(0.01) possibly_damaging(0.728) TCGA-AA-3492-01 22 51012953 51012953 C T CPT1B Missense_Mutation p.R285H 0.40 deleterious(0) possibly_damaging(0.613) TCGA-AA-3492-01 2 101192911 101192911 C T PDCL3 Missense_Mutation p.R225W 0.46 tolerated(0.06) benign(0.077) TCGA-AA-3492-01 2 102483713 102483713 A - MAP4K4 Frame_Shift_Del p.N722Mfs*3 0.30 TCGA-AA-3492-01 2 10262856 10262856 G - RRM2 Frame_Shift_Del p.S39Rfs*44 0.24 TCGA-AA-3492-01 2 102788292 102788292 C A IL1R1 Silent p.T251T 0.52 TCGA-AA-3492-01 2 102988513 102988513 T A IL18R1 Missense_Mutation p.F135I 0.43 tolerated(0.33) benign(0.008) TCGA-AA-3492-01 2 103335131 103335131 G A MFSD9 Silent p.G391G 0.39 TCGA-AA-3492-01 2 103335284 103335284 C - MFSD9 Frame_Shift_Del p.P341Qfs*60 0.32 TCGA-AA-3492-01 2 107040103 107040103 T - RGPD3 Frame_Shift_Del p.V1441* 0.23 TCGA-AA-3492-01 2 109004027 109004027 A - SULT1C4 3'UTR 0.40 TCGA-AA-3492-01 2 11052985 11052985 G A KCNF1 Missense_Mutation p.V145M 0.39 tolerated(0.08) probably_damaging(0.999) TCGA-AA-3492-01 2 112994151 112994151 G A ZC3H8 Silent p.G164G 0.08 TCGA-AA-3492-01 2 113943596 113943596 G A PSD4 Silent p.S464S 0.31 TCGA-AA-3492-01 2 114198931 114198931 C A CBWD2 Missense_Mutation p.A53D 0.13 deleterious(0) probably_damaging(0.969) TCGA-AA-3492-01 2 11802345 11802345 C T NTSR2 Missense_Mutation p.V216M 0.43 deleterious(0.02) possibly_damaging(0.87) TCGA-AA-3492-01 2 122215334 122215334 C T CLASP1 Splice_Site p.X439_splice 0.41 TCGA-AA-3492-01 2 125547698 125547698 A G CNTNAP5 Missense_Mutation p.E990G 0.09 tolerated(0.4) probably_damaging(0.947) TCGA-AA-3492-01 2 128331611 128331611 C A MYO7B Missense_Mutation p.L237M 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 2 128384614 128384614 G A MYO7B Missense_Mutation p.R1401H 0.35 deleterious(0.01) possibly_damaging(0.487) TCGA-AA-3492-01 2 128471199 128471199 C T WDR33 Missense_Mutation p.R1089Q 0.38 deleterious_low_confidence(0.01) benign(0.2) TCGA-AA-3492-01 2 128918103 128918103 G A UGGT1 Missense_Mutation p.V878M 0.38 tolerated(0.33) benign(0.003) TCGA-AA-3492-01 2 129025827 129025827 C A HS6ST1 Missense_Mutation p.R382L 0.40 tolerated(0.1) benign(0.095) TCGA-AA-3492-01 2 130739338 130739338 C T RAB6C 3'UTR 0.38 TCGA-AA-3492-01 2 130832634 130832634 A G POTEF Missense_Mutation p.L804P 0.35 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AA-3492-01 2 130902365 130902365 C A CCDC74B Missense_Mutation p.A69S 0.21 deleterious(0.04) possibly_damaging(0.479) TCGA-AA-3492-01 2 130941477 130941478 CT - MZT2B Intron 0.38 TCGA-AA-3492-01 2 132021546 132021546 C A POTEE Missense_Mutation p.P840T 0.09 deleterious_low_confidence(0) benign(0.119) TCGA-AA-3492-01 2 132276749 132276749 A G AC093838.4 RNA 0.35 TCGA-AA-3492-01 2 135107469 135107469 A - MGAT5 Frame_Shift_Del p.K403Nfs*4 0.29 TCGA-AA-3492-01 2 135596250 135596250 G A ACMSD 5'UTR 0.11 TCGA-AA-3492-01 2 136566159 136566159 G A LCT Missense_Mutation p.T1253M 0.40 tolerated(0.49) benign(0.003) TCGA-AA-3492-01 2 141660588 141660588 T G LRP1B Missense_Mutation p.K1223Q 0.31 benign(0.403) TCGA-AA-3492-01 2 141806713 141806713 A G LRP1B Missense_Mutation p.I544T 0.41 benign(0.307) TCGA-AA-3492-01 2 148683674 148683676 GTT - ACVR2A In_Frame_Del p.V433del 0.29 TCGA-AA-3492-01 2 149868180 149868180 A G KIF5C Missense_Mutation p.Y955C 0.44 deleterious_low_confidence(0.04) benign(0.195) TCGA-AA-3492-01 2 151326381 151326381 C T RND3 3'UTR 0.25 TCGA-AA-3492-01 2 152132054 152132054 C T NMI Missense_Mutation p.R193H 0.40 tolerated(0.59) benign(0) TCGA-AA-3492-01 2 152132344 152132344 A G NMI Silent p.H125H 0.21 TCGA-AA-3492-01 2 152319674 152319674 C A RIF1 Missense_Mutation p.P1214T 0.26 deleterious(0.03) benign(0.323) TCGA-AA-3492-01 2 152544890 152544890 A G NEB Silent p.H777H 0.31 TCGA-AA-3492-01 2 153575514 153575514 G A ARL6IP6 Missense_Mutation p.A126T 0.40 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 2 154335102 154335102 G A RPRM 5'UTR 0.31 TCGA-AA-3492-01 2 155555292 155555292 C T KCNJ3 Missense_Mutation p.S2F 0.50 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-AA-3492-01 2 158181656 158181658 TTA - ERMN Intron 0.35 TCGA-AA-3492-01 2 158622604 158622604 T C ACVR1 Missense_Mutation p.T299A 0.33 tolerated(0.22) benign(0.027) TCGA-AA-3492-01 2 160082214 160082214 C T TANC1 Missense_Mutation p.A1276V 0.23 deleterious(0) possibly_damaging(0.581) TCGA-AA-3492-01 2 160958179 160958179 A - ITGB6 3'UTR 0.26 TCGA-AA-3492-01 2 162273258 162273258 C T TBR1 Missense_Mutation p.P113S 0.67 tolerated(0.1) benign(0.002) TCGA-AA-3492-01 2 1653022 1653022 C T PXDN Missense_Mutation p.G844R 0.35 deleterious(0) probably_damaging(0.976) TCGA-AA-3492-01 2 1653259 1653259 G A PXDN Missense_Mutation p.R765C 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 2 166170159 166170159 A C SCN2A Missense_Mutation p.K355T 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 2 167055534 167055534 G T SCN9A Missense_Mutation p.P1861H 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 2 167085266 167085266 G A SCN9A Nonsense_Mutation p.R1370* 0.22 TCGA-AA-3492-01 2 167159790 167159790 A T SCN9A Silent p.A237A 0.39 TCGA-AA-3492-01 2 168099532 168099532 T C XIRP2 Missense_Mutation p.Y544H 0.34 probably_damaging(0.994) TCGA-AA-3492-01 2 168727020 168727020 C T B3GALT1 3'UTR 0.40 TCGA-AA-3492-01 2 169312962 169312962 G A CERS6 Missense_Mutation p.A2T 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3492-01 2 169788944 169788944 A - ABCB11 Frame_Shift_Del p.Q1053Nfs*44 0.17 TCGA-AA-3492-01 2 170361225 170361225 G A BBS5 3'UTR 0.22 TCGA-AA-3492-01 2 170428529 170428530 - T FASTKD1 Frame_Shift_Ins p.T4Nfs*34 0.32 TCGA-AA-3492-01 2 171570256 171570256 C - LINC01124 Frame_Shift_Del p.G233Efs*27 0.35 TCGA-AA-3492-01 2 171573413 171573413 C T SP5 Silent p.A232A 0.58 TCGA-AA-3492-01 2 172952810 172952810 C T DLX1 Missense_Mutation p.A198V 0.44 tolerated(0.51) benign(0.002) TCGA-AA-3492-01 2 175437120 175437120 G A WIPF1 Missense_Mutation p.A138V 0.50 deleterious(0.03) benign(0.183) TCGA-AA-3492-01 2 176987812 176987812 G A HOXD9 Missense_Mutation p.A106T 0.29 tolerated(0.06) probably_damaging(0.91) TCGA-AA-3492-01 2 178299106 178299106 T C AGPS Silent p.N134N 0.39 TCGA-AA-3492-01 2 178481375 178481375 A - TTC30A 3'UTR 0.40 TCGA-AA-3492-01 2 178684954 178684954 T C PDE11A Silent p.Q523Q 0.45 TCGA-AA-3492-01 2 179397978 179397978 C T TTN Missense_Mutation p.R34455H 0.37 TCGA-AA-3492-01 2 179428246 179428246 T C TTN Missense_Mutation p.H27538R 0.39 TCGA-AA-3492-01 2 179440876 179440876 G A TTN Missense_Mutation p.A23328V 0.45 TCGA-AA-3492-01 2 179454338 179454338 A G TTN Missense_Mutation p.V20705A 0.13 TCGA-AA-3492-01 2 179495846 179495846 G A TTN Silent p.I14643I 0.30 TCGA-AA-3492-01 2 179498160 179498160 T G TTN Missense_Mutation p.K14309T 0.36 TCGA-AA-3492-01 2 179517014 179517014 T - TTN Frame_Shift_Del p.K13063Sfs*15 0.28 TCGA-AA-3492-01 2 179554603 179554603 G A TTN Missense_Mutation p.P10595S 0.29 TCGA-AA-3492-01 2 179575512 179575512 G A TTN Nonsense_Mutation p.R9438* 0.41 TCGA-AA-3492-01 2 179664305 179664305 C A TTN Missense_Mutation p.A275S 0.35 TCGA-AA-3492-01 2 179986645 179986645 G A SESTD1 Nonsense_Mutation p.Q432* 0.31 TCGA-AA-3492-01 2 183621115 183621115 C T DNAJC10 Silent p.N576N 0.24 TCGA-AA-3492-01 2 1893235 1893235 C A MYT1L Missense_Mutation p.E764D 0.51 tolerated(0.31) benign(0.011) TCGA-AA-3492-01 2 190617669 190617669 G A OSGEPL1 Missense_Mutation p.R334C 0.33 deleterious(0.02) benign(0.351) TCGA-AA-3492-01 2 190925048 190925048 C T MSTN Missense_Mutation p.V163I 0.40 tolerated(0.12) benign(0.022) TCGA-AA-3492-01 2 196791170 196791170 C T DNAH7 Missense_Mutation p.A1198T 0.10 deleterious(0.03) benign(0.394) TCGA-AA-3492-01 2 197990571 197990571 C T ANKRD44 Missense_Mutation p.G151D 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 2 198948799 198948799 G A PLCL1 Silent p.E186E 0.41 TCGA-AA-3492-01 2 201305416 201305416 G A SPATS2L Missense_Mutation p.V233I 0.09 tolerated(0.05) probably_damaging(0.997) TCGA-AA-3492-01 2 202149633 202149633 C A CASP8 Nonsense_Mutation p.Y358* 0.30 TCGA-AA-3492-01 2 202342452 202342452 A G STRADB Missense_Mutation p.Y220C 0.10 deleterious(0.01) probably_damaging(0.925) TCGA-AA-3492-01 2 202902507 202902507 A G FZD7 3'UTR 0.37 TCGA-AA-3492-01 2 203130680 203130680 G T NOP58 Nonsense_Mutation p.E6* 0.44 TCGA-AA-3492-01 2 203420002 203420002 A - BMPR2 Frame_Shift_Del p.I540Lfs*24 0.29 TCGA-AA-3492-01 2 206041299 206041299 A C PARD3B Missense_Mutation p.K579T 0.41 tolerated(0.3) benign(0.208) TCGA-AA-3492-01 2 206305390 206305390 C T PARD3B Missense_Mutation p.A951V 0.45 tolerated(0.27) benign(0.001) TCGA-AA-3492-01 2 206608117 206608117 A G NRP2 Silent p.T494T 0.46 TCGA-AA-3492-01 2 206641184 206641184 G A NRP2 Intron 0.46 TCGA-AA-3492-01 2 208030245 208030245 G T KLF7 Silent p.V16V 0.21 TCGA-AA-3492-01 2 209220196 209220196 G A PIKFYVE 3'UTR 0.31 TCGA-AA-3492-01 2 210560391 210560391 C T MAP2 Missense_Mutation p.A1166V 0.38 tolerated_low_confidence(0.08) possibly_damaging(0.803) TCGA-AA-3492-01 2 216190733 216190733 G A ATIC Missense_Mutation p.A135T 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-AA-3492-01 2 216248174 216248174 C T FN1 Missense_Mutation p.D1643N 0.29 deleterious(0.04) benign(0.128) TCGA-AA-3492-01 2 217002891 217002891 A G XRCC5 Missense_Mutation p.Y444C 0.42 tolerated(0.26) benign(0.021) TCGA-AA-3492-01 2 217724411 217724411 G A TNP1 Silent p.R49R 0.25 TCGA-AA-3492-01 2 219498584 219498584 A C PLCD4 Intron 0.44 TCGA-AA-3492-01 2 219507917 219507917 T C ZNF142 Missense_Mutation p.T1108A 0.27 tolerated(0.05) benign(0.217) TCGA-AA-3492-01 2 219846732 219846732 C T FEV Missense_Mutation p.R125H 0.50 deleterious(0) probably_damaging(0.976) TCGA-AA-3492-01 2 219919916 219919916 C T IHH 3'UTR 0.42 TCGA-AA-3492-01 2 220136353 220136353 T C TUBA4B RNA 0.22 TCGA-AA-3492-01 2 220136384 220136384 T C TUBA4B RNA 0.16 TCGA-AA-3492-01 2 220136420 220136420 G A TUBA4B RNA 0.23 TCGA-AA-3492-01 2 220440353 220440353 C A INHA 3'UTR 0.33 TCGA-AA-3492-01 2 223065774 223065774 G A PAX3 3'UTR 0.27 TCGA-AA-3492-01 2 226447150 226447151 - C NYAP2 Frame_Shift_Ins p.A342Rfs*90 0.26 TCGA-AA-3492-01 2 227660104 227660104 C T IRS1 Silent p.V1117V 0.39 TCGA-AA-3492-01 2 228176830 228176830 C G COL4A3 3'UTR 0.29 TCGA-AA-3492-01 2 230636319 230636319 G A TRIP12 Silent p.G1833G 0.32 TCGA-AA-3492-01 2 230661315 230661315 A - TRIP12 Frame_Shift_Del p.S1195Lfs*24 0.27 TCGA-AA-3492-01 2 231265071 231265071 G T SP140L Intron 0.32 TCGA-AA-3492-01 2 232393239 232393239 G A NMUR1 Missense_Mutation p.H165Y 0.24 tolerated(0.06) probably_damaging(0.978) TCGA-AA-3492-01 2 233675971 233675971 T - GIGYF2 Frame_Shift_Del p.L661Wfs*27 0.36 TCGA-AA-3492-01 2 233735114 233735114 G T C2orf82 Silent p.A21A 0.37 TCGA-AA-3492-01 2 233897541 233897541 C A NEU2 Missense_Mutation p.L54M 0.46 tolerated(0.23) possibly_damaging(0.616) TCGA-AA-3492-01 2 233899574 233899574 C T NEU2 Missense_Mutation p.A317V 0.42 deleterious(0.02) benign(0.006) TCGA-AA-3492-01 2 234394476 234394476 C A USP40 Silent p.V1126V 0.35 TCGA-AA-3492-01 2 234749349 234749349 G A HJURP Missense_Mutation p.R693C 0.31 tolerated(0.22) benign(0) TCGA-AA-3492-01 2 234854586 234854586 C T TRPM8 Silent p.L262L 0.38 TCGA-AA-3492-01 2 234916749 234916749 T C TRPM8 Splice_Site p.X1088_splice 0.41 TCGA-AA-3492-01 2 235951091 235951091 C T SH3BP4 Nonsense_Mutation p.R560* 0.24 TCGA-AA-3492-01 2 236649676 236649676 G C AGAP1 Missense_Mutation p.G127A 0.47 tolerated(0.06) benign(0.058) TCGA-AA-3492-01 2 236653473 236653473 G - AGAP1 Frame_Shift_Del p.G177Efs*6 0.23 TCGA-AA-3492-01 2 237489246 237489246 G A ACKR3 Silent p.T46T 0.09 TCGA-AA-3492-01 2 238249681 238249681 G A COL6A3 Silent p.S2626S 0.43 TCGA-AA-3492-01 2 238296564 238296564 C T COL6A3 Missense_Mutation p.A325T 0.29 probably_damaging(0.99) TCGA-AA-3492-01 2 239164340 239164340 A G PER2 Missense_Mutation p.Y760H 0.39 tolerated(0.56) benign(0.001) TCGA-AA-3492-01 2 239185817 239185817 A G PER2 Missense_Mutation p.L83P 0.29 deleterious(0) probably_damaging(0.959) TCGA-AA-3492-01 2 241070448 241070448 G A MYEOV2 Intron 0.14 TCGA-AA-3492-01 2 241078673 241078673 G - OTOS Frame_Shift_Del p.Q62Rfs*? 0.32 TCGA-AA-3492-01 2 241991499 241991499 G A SNED1 Missense_Mutation p.G632S 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 2 24345375 24345375 T C PFN4 Missense_Mutation p.T11A 0.40 tolerated(0.7) benign(0.002) TCGA-AA-3492-01 2 25384062 25384062 G A POMC Missense_Mutation p.P231L 0.39 deleterious(0) possibly_damaging(0.864) TCGA-AA-3492-01 2 25966467 25966467 T G ASXL2 Silent p.S913S 0.37 TCGA-AA-3492-01 2 26178498 26178498 A G KIF3C Missense_Mutation p.M561T 0.32 benign(0) TCGA-AA-3492-01 2 26204497 26204497 C T KIF3C Missense_Mutation p.G97D 0.34 probably_damaging(1) TCGA-AA-3492-01 2 26407186 26407186 G A GAREML Missense_Mutation p.A157T 0.35 deleterious(0.04) probably_damaging(0.996) TCGA-AA-3492-01 2 27301938 27301938 C - EMILIN1 Frame_Shift_Del p.R4Afs*12 0.41 TCGA-AA-3492-01 2 27322877 27322877 T C KHK 3'UTR 0.58 TCGA-AA-3492-01 2 27360640 27360640 G A C2orf53 Silent p.S186S 0.30 TCGA-AA-3492-01 2 27445476 27445476 G A CAD Silent p.Q195Q 0.38 TCGA-AA-3492-01 2 27556572 27556572 G T GTF3C2 Missense_Mutation p.A561D 0.40 tolerated(0.24) possibly_damaging(0.504) TCGA-AA-3492-01 2 27593608 27593608 A G SNX17 5'UTR 0.26 TCGA-AA-3492-01 2 27802662 27802662 G T C2orf16 Missense_Mutation p.A1075S 0.42 tolerated(0.26) possibly_damaging(0.503) TCGA-AA-3492-01 2 28117484 28117484 G A BRE Missense_Mutation p.V21M 0.39 deleterious(0.04) possibly_damaging(0.61) TCGA-AA-3492-01 2 31154949 31154949 G A GALNT14 Missense_Mutation p.A353V 0.47 deleterious(0) possibly_damaging(0.615) TCGA-AA-3492-01 2 31412209 31412209 G T CAPN14 Missense_Mutation p.P475T 0.24 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 2 31560616 31560616 G T XDH Missense_Mutation p.A1281E 0.40 deleterious(0) possibly_damaging(0.703) TCGA-AA-3492-01 2 32605312 32605313 - A BIRC6 Frame_Shift_Ins p.N202Kfs*5 0.24 TCGA-AA-3492-01 2 32726904 32726904 G T BIRC6 Missense_Mutation p.M3052I 0.44 benign(0.001) TCGA-AA-3492-01 2 37230785 37230785 C T HEATR5B Silent p.L1650L 0.28 TCGA-AA-3492-01 2 37230789 37230789 A G HEATR5B Missense_Mutation p.L1649P 0.29 deleterious(0) probably_damaging(0.976) TCGA-AA-3492-01 2 39095423 39095428 CCACCG - DHX57 In_Frame_Del p.G48_G49del 0.27 TCGA-AA-3492-01 2 39107780 39107780 G C MORN2 5'UTR 0.42 TCGA-AA-3492-01 2 39164487 39164487 A T ARHGEF33 Missense_Mutation p.T193S 0.37 tolerated(0.57) benign(0.005) TCGA-AA-3492-01 2 39456607 39456607 T G CDKL4 Missense_Mutation p.N23H 0.28 tolerated(0.55) benign(0.201) TCGA-AA-3492-01 2 42510011 42510011 G A EML4 Silent p.P280P 0.11 TCGA-AA-3492-01 2 43800084 43800084 C - THADA Frame_Shift_Del p.A593Lfs*5 0.50 TCGA-AA-3492-01 2 44021648 44021648 C G DYNC2LI1 Missense_Mutation p.P125A 0.41 tolerated(0.51) benign(0.005) TCGA-AA-3492-01 2 46986728 46986728 A T SOCS5 Missense_Mutation p.R353S 0.39 tolerated(0.76) benign(0.036) TCGA-AA-3492-01 2 47637368 47637368 T C MSH2 Missense_Mutation p.S168P 0.27 deleterious(0.04) benign(0.357) TCGA-AA-3492-01 2 47705591 47705593 TAA - MSH2 In_Frame_Del p.N799del 0.31 TCGA-AA-3492-01 2 50149333 50149333 G T NRXN1 Silent p.R1465R 0.63 TCGA-AA-3492-01 2 53927532 53927532 C A ASB3 Nonsense_Mutation p.G407* 0.36 TCGA-AA-3492-01 2 54154617 54154617 T C PSME4 Missense_Mutation p.T503A 0.42 deleterious(0) benign(0.338) TCGA-AA-3492-01 2 55200965 55200965 G A RTN4 Missense_Mutation p.R1157W 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 2 55449542 55449542 T C CLHC1 Silent p.S2S 0.39 TCGA-AA-3492-01 2 55842620 55842620 C T SMEK2 Silent p.K55K 0.39 TCGA-AA-3492-01 2 5837353 5837353 C T SOX11 3'UTR 0.40 TCGA-AA-3492-01 2 5840562 5840567 AAAAAG - SOX11 3'UTR 0.67 TCGA-AA-3492-01 2 58459207 58459207 A G FANCL Missense_Mutation p.L46S 0.35 tolerated(0.41) benign(0.096) TCGA-AA-3492-01 2 61391668 61391668 A - C2orf74 3'UTR 0.24 TCGA-AA-3492-01 2 68592435 68592435 T C PLEK 5'UTR 0.16 TCGA-AA-3492-01 2 68873428 68873428 G A PROKR1 Missense_Mutation p.A159T 0.25 deleterious(0) probably_damaging(0.972) TCGA-AA-3492-01 2 68962237 68962237 A G ARHGAP25 5'UTR 0.47 TCGA-AA-3492-01 2 69664416 69664416 G T NFU1 Intron 0.42 TCGA-AA-3492-01 2 70409117 70409117 T - C2orf42 Frame_Shift_Del p.M1? 0.26 TCGA-AA-3492-01 2 70903959 70903959 G A ADD2 Missense_Mutation p.A521V 0.08 deleterious(0.01) possibly_damaging(0.861) TCGA-AA-3492-01 2 71159922 71159922 G A VAX2 Missense_Mutation p.R154H 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 2 71376508 71376508 A C MPHOSPH10 Silent p.A607A 0.44 TCGA-AA-3492-01 2 7160664 7160664 A C RNF144A Missense_Mutation p.Q121P 0.29 tolerated(0.43) benign(0.167) TCGA-AA-3492-01 2 7160674 7160674 C T RNF144A Silent p.D124D 0.33 TCGA-AA-3492-01 2 71739022 71739022 C T DYSF Missense_Mutation p.P144L 0.38 deleterious(0.02) benign(0.216) TCGA-AA-3492-01 2 72374909 72374909 G T CYP26B1 Missense_Mutation p.L19M 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-AA-3492-01 2 73115530 73115530 T G SPR Missense_Mutation p.M131R 0.44 deleterious(0.03) possibly_damaging(0.743) TCGA-AA-3492-01 2 73651778 73651778 G A ALMS1 Missense_Mutation p.E329K 0.26 benign(0.152) TCGA-AA-3492-01 2 73679208 73679208 C T ALMS1 Missense_Mutation p.P1851S 0.40 benign(0.007) TCGA-AA-3492-01 2 73828486 73828486 G A ALMS1 Missense_Mutation p.G4012S 0.44 benign(0.007) TCGA-AA-3492-01 2 74433013 74433013 G A MTHFD2 Missense_Mutation p.V95M 0.34 deleterious(0.02) possibly_damaging(0.633) TCGA-AA-3492-01 2 74691624 74691624 T C MOGS Missense_Mutation p.Q193R 0.58 tolerated(0.29) benign(0.055) TCGA-AA-3492-01 2 74907070 74907070 C T SEMA4F Missense_Mutation p.R683C 0.20 tolerated(0.07) benign(0.008) TCGA-AA-3492-01 2 75278239 75278239 G A TACR1 Intron 0.42 TCGA-AA-3492-01 2 76975894 76975894 C T LRRTM4 Missense_Mutation p.R567Q 0.41 tolerated_low_confidence(0.21) benign(0.011) TCGA-AA-3492-01 2 80136889 80136889 C T CTNNA2 Missense_Mutation p.A341V 0.51 deleterious(0) possibly_damaging(0.715) TCGA-AA-3492-01 2 84774692 84774692 C T DNAH6 Missense_Mutation p.A381V 0.34 tolerated(0.12) benign(0.064) TCGA-AA-3492-01 2 84832698 84832698 C T DNAH6 Silent p.G1052G 0.10 TCGA-AA-3492-01 2 84864358 84864358 C T DNAH6 Missense_Mutation p.R1560W 0.27 deleterious(0) probably_damaging(0.955) TCGA-AA-3492-01 2 85032863 85032863 A G DNAH6 Silent p.K3852K 0.38 TCGA-AA-3492-01 2 85051153 85051153 G A TRABD2A Missense_Mutation p.R371W 0.34 deleterious(0.02) possibly_damaging(0.606) TCGA-AA-3492-01 2 85661602 85661602 G A SH2D6 5'Flank 0.38 TCGA-AA-3492-01 2 85820078 85820078 C - VAMP5 Frame_Shift_Del p.F51Sfs*35 0.22 TCGA-AA-3492-01 2 85824272 85824272 G A RNF181 Missense_Mutation p.D125N 0.07 deleterious(0.05) benign(0.126) TCGA-AA-3492-01 2 85835939 85835939 C A C2orf68 3'UTR 0.35 TCGA-AA-3492-01 2 86439497 86439497 A G MRPL35 3'UTR 0.44 TCGA-AA-3492-01 2 86479143 86479143 A G REEP1 Silent p.L125L 0.29 TCGA-AA-3492-01 2 88387387 88387387 G A SMYD1 Silent p.A107A 0.46 TCGA-AA-3492-01 2 88857142 88857142 A - EIF2AK3 3'UTR 0.27 TCGA-AA-3492-01 2 89104027 89104027 A G ANKRD36BP2 RNA 0.40 TCGA-AA-3492-01 2 89246901 89246901 C A IGKV1-5 Missense_Mutation p.G90V 0.40 deleterious(0) probably_damaging(0.977) TCGA-AA-3492-01 2 9458704 9458704 G A ASAP2 Missense_Mutation p.G133R 0.33 deleterious(0.03) probably_damaging(0.953) TCGA-AA-3492-01 2 9528458 9528458 C A ASAP2 Missense_Mutation p.S722R 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 2 95522769 95522769 A G ANKRD20A8P RNA 0.32 TCGA-AA-3492-01 2 96687157 96687157 C - GPAT2 3'Flank 0.30 TCGA-AA-3492-01 2 97361285 97361286 - C FER1L5 RNA 0.32 TCGA-AA-3492-01 2 97368969 97368969 C T LMAN2L 3'Flank 0.45 TCGA-AA-3492-01 2 97526421 97526421 C T SEMA4C Missense_Mutation p.R815H 0.50 deleterious(0.02) probably_damaging(0.935) TCGA-AA-3492-01 2 97637864 97637864 G - FAM178B Frame_Shift_Del p.P113Rfs*31 0.27 TCGA-AA-3492-01 2 98173419 98173419 G A ANKRD36B RNA 0.15 TCGA-AA-3492-01 2 98341695 98341695 G A ZAP70 Silent p.A181A 0.46 TCGA-AA-3492-01 2 99163134 99163134 C T INPP4A Silent p.H380H 0.07 TCGA-AA-3492-01 3 100021061 100021061 G A TBC1D23 Missense_Mutation p.V415I 0.37 tolerated(0.06) possibly_damaging(0.838) TCGA-AA-3492-01 3 101446291 101446291 T C CEP97 Missense_Mutation p.V84A 0.41 deleterious(0.01) possibly_damaging(0.622) TCGA-AA-3492-01 3 109049345 109049345 G A DPPA4 Intron 0.67 TCGA-AA-3492-01 3 11059123 11059123 A - SLC6A1 Frame_Shift_Del p.N77Mfs*7 0.26 TCGA-AA-3492-01 3 110790961 110790961 C - PVRL3 Frame_Shift_Del p.P34Rfs*23 0.39 TCGA-AA-3492-01 3 11304650 11304650 C T HRH1 3'UTR 0.39 TCGA-AA-3492-01 3 113377262 113377262 T C KIAA2018 Silent p.S1089S 0.69 TCGA-AA-3492-01 3 115395254 115395254 G A GAP43 Missense_Mutation p.S178N 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3492-01 3 119134486 119134486 G A ARHGAP31 Missense_Mutation p.S1237N 0.12 tolerated(0.19) benign(0.002) TCGA-AA-3492-01 3 119301305 119301305 C T ADPRH Missense_Mutation p.R97W 0.57 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 119421925 119421925 C T MAATS1 5'UTR 0.27 TCGA-AA-3492-01 3 120941991 120941991 G A STXBP5L Silent p.T366T 0.47 TCGA-AA-3492-01 3 122288143 122288143 T C DTX3L Missense_Mutation p.Y403H 0.34 deleterious(0) probably_damaging(0.992) TCGA-AA-3492-01 3 123674868 123674868 C T CCDC14 Intron 0.42 TCGA-AA-3492-01 3 123675625 123675625 C T CCDC14 Silent p.R64R 0.08 TCGA-AA-3492-01 3 124436170 124436170 C T KALRN Nonsense_Mutation p.R1088* 0.44 TCGA-AA-3492-01 3 124732832 124732832 C T HEG1 Missense_Mutation p.A531T 0.48 tolerated(1) benign(0) TCGA-AA-3492-01 3 126155213 126155215 AGG - CCDC37 In_Frame_Del p.E605del 0.40 TCGA-AA-3492-01 3 126748762 126748762 G A PLXNA1 Missense_Mutation p.R1639H 0.38 deleterious(0.05) probably_damaging(1) TCGA-AA-3492-01 3 127413907 127413907 G A MGLL Silent p.L243L 0.40 TCGA-AA-3492-01 3 128182717 128182717 T - DNAJB8 5'UTR 0.31 TCGA-AA-3492-01 3 128339335 128339335 C T RPN1 Silent p.T581T 0.14 TCGA-AA-3492-01 3 129292540 129292540 G A PLXND1 Nonsense_Mutation p.R912* 0.31 TCGA-AA-3492-01 3 12957102 12957102 T C IQSEC1 Missense_Mutation p.K732E 0.38 deleterious(0.02) possibly_damaging(0.734) TCGA-AA-3492-01 3 12978142 12978142 C T IQSEC1 Missense_Mutation p.R139H 0.28 deleterious(0.03) probably_damaging(0.985) TCGA-AA-3492-01 3 130284438 130284438 G T COL6A6 Missense_Mutation p.R421M 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 3 130380547 130380547 C A COL6A6 Missense_Mutation p.A1966D 0.39 deleterious(0.01) possibly_damaging(0.908) TCGA-AA-3492-01 3 130398195 130398195 A G PIK3R4 Silent p.T1347T 0.41 TCGA-AA-3492-01 3 131219301 131219301 A G MRPL3 Silent p.G114G 0.16 TCGA-AA-3492-01 3 13413398 13413398 G A NUP210 Silent p.S574S 0.37 TCGA-AA-3492-01 3 134280378 134280378 C T CEP63 3'UTR 0.40 TCGA-AA-3492-01 3 134280396 134280396 A G CEP63 3'UTR 0.40 TCGA-AA-3492-01 3 138188338 138188338 A G ESYT3 Missense_Mutation p.T499A 0.41 tolerated(0.06) benign(0.174) TCGA-AA-3492-01 3 138192446 138192446 G A ESYT3 Missense_Mutation p.R769H 0.41 tolerated(0.12) benign(0.002) TCGA-AA-3492-01 3 139092088 139092088 T C COPB2 Missense_Mutation p.Y354C 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-3492-01 3 142286945 142286945 C T ATR Silent p.L37L 0.36 TCGA-AA-3492-01 3 1427450 1427450 C - CNTN6 Frame_Shift_Del p.P893Qfs*22 0.23 TCGA-AA-3492-01 3 14518783 14518783 G A SLC6A6 Missense_Mutation p.R427H 0.40 tolerated(0.06) benign(0.013) TCGA-AA-3492-01 3 145799543 145799543 A G PLOD2 Missense_Mutation p.I447T 0.56 deleterious(0.02) possibly_damaging(0.541) TCGA-AA-3492-01 3 148558745 148558745 G T CPB1 Missense_Mutation p.A153S 0.34 tolerated(0.27) benign(0.008) TCGA-AA-3492-01 3 14862324 14862325 TC - FGD5 Frame_Shift_Del p.L585Vfs*69 0.33 TCGA-AA-3492-01 3 148847592 148847592 G - HPS3 Frame_Shift_Del p.R30Vfs*48 0.12 TCGA-AA-3492-01 3 149684132 149684132 A G PFN2 3'UTR 0.36 TCGA-AA-3492-01 3 15084406 15084406 T - NR2C2 Frame_Shift_Del p.F582Lfs*10 0.35 TCGA-AA-3492-01 3 15100902 15100902 G A MRPS25 Missense_Mutation p.P72L 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 151134124 151134124 C T MED12L Missense_Mutation p.P2073S 0.08 tolerated_low_confidence(0.44) benign(0.002) TCGA-AA-3492-01 3 15288300 15288300 G A CAPN7 Missense_Mutation p.R691Q 0.37 tolerated(0.32) benign(0.018) TCGA-AA-3492-01 3 153840241 153840241 G A ARHGEF26 Missense_Mutation p.A154T 0.42 tolerated_low_confidence(0.17) benign(0.003) TCGA-AA-3492-01 3 154056059 154056059 C T GPR149 Missense_Mutation p.R542H 0.40 deleterious(0) probably_damaging(0.912) TCGA-AA-3492-01 3 156009613 156009613 C A KCNAB1 Intron 0.48 TCGA-AA-3492-01 3 156867377 156867377 T A CCNL1 Nonsense_Mutation p.R344* 0.40 TCGA-AA-3492-01 3 157820513 157820513 C T SHOX2 Missense_Mutation p.R194Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 3 160142655 160142655 G A SMC4 Missense_Mutation p.V776I 0.27 tolerated(0.71) benign(0.002) TCGA-AA-3492-01 3 160254613 160254613 G A KPNA4 Nonsense_Mutation p.R29* 0.48 TCGA-AA-3492-01 3 16264160 16264160 C T GALNT15 Silent p.G556G 0.33 TCGA-AA-3492-01 3 164907774 164907774 G A SLITRK3 Missense_Mutation p.P282L 0.42 deleterious(0) possibly_damaging(0.786) TCGA-AA-3492-01 3 165547832 165547832 C T BCHE Missense_Mutation p.M330I 0.10 tolerated(0.15) benign(0.001) TCGA-AA-3492-01 3 16639027 16639027 A - DAZL Frame_Shift_Del p.F108Lfs*9 0.25 TCGA-AA-3492-01 3 16646810 16646810 G A DAZL 5'Flank 0.42 TCGA-AA-3492-01 3 167254729 167254729 C A WDR49 Missense_Mutation p.W276L 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 169840411 169840411 C T PHC3 Missense_Mutation p.G637E 0.38 deleterious(0.03) probably_damaging(0.943) TCGA-AA-3492-01 3 170136887 170136887 C T CLDN11 Silent p.F11F 0.09 TCGA-AA-3492-01 3 171330183 171330183 C T PLD1 Missense_Mutation p.R923H 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 3 172060876 172060876 C T FNDC3B Missense_Mutation p.P683S 0.28 deleterious(0.03) benign(0.299) TCGA-AA-3492-01 3 178748671 178748671 C T ZMAT3 Silent p.P129P 0.13 TCGA-AA-3492-01 3 179052260 179052260 T - ZNF639 3'UTR 0.28 TCGA-AA-3492-01 3 179104356 179104356 A T MFN1 Missense_Mutation p.T651S 0.38 tolerated(0.5) benign(0.026) TCGA-AA-3492-01 3 179280918 179280918 G T ACTL6A Intron 0.28 TCGA-AA-3492-01 3 179408080 179408081 - T USP13 Frame_Shift_Ins p.L118Ffs*6 0.29 TCGA-AA-3492-01 3 179519471 179519471 C T PEX5L 3'UTR 0.30 TCGA-AA-3492-01 3 179519748 179519748 A G PEX5L Silent p.H583H 0.43 TCGA-AA-3492-01 3 183822636 183822636 A G HTR3E Missense_Mutation p.R177G 0.44 tolerated(0.06) benign(0.296) TCGA-AA-3492-01 3 183957318 183957318 A G VWA5B2 Missense_Mutation p.D780G 0.42 tolerated(0.14) benign(0.007) TCGA-AA-3492-01 3 183959186 183959187 - C VWA5B2 Frame_Shift_Ins p.V1061Gfs*60 0.09 TCGA-AA-3492-01 3 183961646 183961646 A T ALG3 Missense_Mutation p.F289I 0.42 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 183961714 183961714 C T ALG3 Missense_Mutation p.R266H 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 184009984 184009984 C T ECE2 Silent p.V870V 0.40 TCGA-AA-3492-01 3 184075829 184075829 T C CLCN2 Missense_Mutation p.Y179C 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 186980429 186980429 A G MASP1 Missense_Mutation p.V106A 0.44 tolerated(0.28) benign(0.003) TCGA-AA-3492-01 3 187416726 187416726 G A RTP2 Missense_Mutation p.R80C 0.31 deleterious(0) possibly_damaging(0.832) TCGA-AA-3492-01 3 189526183 189526183 C T TP63 Silent p.Y149Y 0.34 TCGA-AA-3492-01 3 192992858 192992858 T C ATP13A5 Silent p.T1210T 0.41 TCGA-AA-3492-01 3 193039555 193039555 G A ATP13A5 Silent p.I610I 0.45 TCGA-AA-3492-01 3 193365894 193365894 A G OPA1 Missense_Mutation p.N618D 0.32 deleterious(0.01) possibly_damaging(0.778) TCGA-AA-3492-01 3 193855957 193855957 G A HES1 Missense_Mutation p.A260T 0.44 tolerated(0.08) benign(0.018) TCGA-AA-3492-01 3 194181536 194181536 G A ATP13A3 Missense_Mutation p.R26C 0.35 tolerated(0.18) benign(0.087) TCGA-AA-3492-01 3 194344258 194344258 C A TMEM44 Missense_Mutation p.Q175H 0.35 deleterious(0.04) benign(0.362) TCGA-AA-3492-01 3 194409409 194409409 G - FAM43A 3'UTR 0.26 TCGA-AA-3492-01 3 195452976 195452976 C A MUC20 Missense_Mutation p.P501H 0.37 deleterious(0) unknown(0) TCGA-AA-3492-01 3 195511605 195511605 G T MUC4 Silent p.S2282S 0.17 TCGA-AA-3492-01 3 195516261 195516261 C T MUC4 Silent p.T730T 0.34 TCGA-AA-3492-01 3 196215533 196215533 C T RNF168 Missense_Mutation p.R108H 0.35 tolerated(1) benign(0.001) TCGA-AA-3492-01 3 196626842 196626842 A - SENP5 Frame_Shift_Del p.K557Nfs*27 0.35 TCGA-AA-3492-01 3 196674501 196674501 C T PIGZ Missense_Mutation p.G423S 0.19 deleterious(0.03) possibly_damaging(0.84) TCGA-AA-3492-01 3 196736640 196736640 T C MFI2 Silent p.R458R 0.32 TCGA-AA-3492-01 3 197348684 197348684 C T AC024560.3 RNA 0.10 TCGA-AA-3492-01 3 20202681 20202681 A - SGOL1 Frame_Shift_Del p.F534Lfs*27 0.26 TCGA-AA-3492-01 3 27203840 27203840 G A NEK10 3'UTR 0.50 TCGA-AA-3492-01 3 27442334 27442334 G T SLC4A7 Missense_Mutation p.P774H 0.45 deleterious(0.02) possibly_damaging(0.823) TCGA-AA-3492-01 3 27758943 27758943 G A EOMES Missense_Mutation p.A560V 0.43 tolerated(0.06) possibly_damaging(0.785) TCGA-AA-3492-01 3 27761702 27761703 - C EOMES Frame_Shift_Ins p.K333Qfs*11 0.39 TCGA-AA-3492-01 3 27763735 27763735 C T EOMES Silent p.A17A 0.33 TCGA-AA-3492-01 3 30732970 30732970 G A TGFBR2 Missense_Mutation p.R553H 0.50 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 30898536 30898536 C T GADL1 Missense_Mutation p.R103Q 0.21 tolerated(0.27) benign(0.006) TCGA-AA-3492-01 3 33134471 33134471 A G TMPPE Missense_Mutation p.L406P 0.44 deleterious(0) probably_damaging(0.929) TCGA-AA-3492-01 3 36876367 36876367 C T TRANK1 Missense_Mutation p.S1806N 0.07 tolerated(0.11) benign(0.022) TCGA-AA-3492-01 3 36898693 36898693 T A TRANK1 Silent p.S796S 0.35 TCGA-AA-3492-01 3 38316493 38316493 G - SLC22A13 Frame_Shift_Del p.S220Hfs*60 0.26 TCGA-AA-3492-01 3 38524680 38524680 G A ACVR2B Missense_Mutation p.E466K 0.42 deleterious(0) probably_damaging(0.981) TCGA-AA-3492-01 3 38763817 38763817 G A SCN10A Missense_Mutation p.R1147C 0.53 deleterious(0.01) possibly_damaging(0.849) TCGA-AA-3492-01 3 39374872 39374872 C T CCR8 Silent p.S350S 0.42 TCGA-AA-3492-01 3 40503582 40503582 G A RPL14 Silent p.A169A 0.34 TCGA-AA-3492-01 3 40529496 40529496 G A ZNF619 Missense_Mutation p.A539T 0.09 tolerated_low_confidence(0.09) benign(0.048) TCGA-AA-3492-01 3 42264530 42264530 T G TRAK1 Silent p.A721A 0.40 TCGA-AA-3492-01 3 42264610 42264610 G A TRAK1 Missense_Mutation p.G748D 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 42590142 42590142 C A SEC22C 3'Flank 0.22 TCGA-AA-3492-01 3 42827648 42827648 G A HIGD1A Missense_Mutation p.A49V 0.40 deleterious(0.01) benign(0.345) TCGA-AA-3492-01 3 44685599 44685599 A G ZNF197 Missense_Mutation p.K993E 0.26 deleterious(0) benign(0.075) TCGA-AA-3492-01 3 44778459 44778460 - T ZNF501 3'UTR 0.21 TCGA-AA-3492-01 3 44778524 44778524 C T ZNF501 3'UTR 0.32 TCGA-AA-3492-01 3 44879825 44879825 A G KIF15 Missense_Mutation p.E1077G 0.53 deleterious(0.01) benign(0.125) TCGA-AA-3492-01 3 45943348 45943348 G A CCR9 Silent p.S356S 0.48 TCGA-AA-3492-01 3 45944009 45944009 C A CCR9 3'UTR 0.09 TCGA-AA-3492-01 3 46245407 46245407 A C CCR1 Missense_Mutation p.L133R 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3492-01 3 46501208 46501208 G A LTF Missense_Mutation p.R49C 0.31 deleterious(0.04) possibly_damaging(0.571) TCGA-AA-3492-01 3 47018150 47018150 G T CCDC12 Missense_Mutation p.L38I 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-AA-3492-01 3 47269994 47269994 C A KIF9 3'UTR 0.53 TCGA-AA-3492-01 3 47376253 47376253 G A KLHL18 Missense_Mutation p.R281H 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 3 47451815 47451815 G A PTPN23 Missense_Mutation p.V843M 0.38 unknown(0) TCGA-AA-3492-01 3 47454400 47454400 C A PTPN23 Missense_Mutation p.P1546T 0.30 unknown(0) TCGA-AA-3492-01 3 47462219 47462219 G A SCAP Missense_Mutation p.P463L 0.43 tolerated(0.09) benign(0.082) TCGA-AA-3492-01 3 47619251 47619251 G T CSPG5 Missense_Mutation p.L89M 0.42 tolerated_low_confidence(0.09) benign(0.359) TCGA-AA-3492-01 3 47957900 47957900 C T MAP4 Missense_Mutation p.A473T 0.25 tolerated(0.35) benign(0.013) TCGA-AA-3492-01 3 48627670 48627670 C T COL7A1 Missense_Mutation p.A676T 0.42 unknown(0) TCGA-AA-3492-01 3 48711897 48711897 G A NCKIPSD 3'UTR 0.25 TCGA-AA-3492-01 3 48716030 48716030 C T NCKIPSD Silent p.V644V 0.51 TCGA-AA-3492-01 3 48725900 48725900 A G IP6K2 Missense_Mutation p.S363P 0.37 tolerated(0.27) possibly_damaging(0.69) TCGA-AA-3492-01 3 49146512 49146512 C T USP19 Missense_Mutation p.R1380H 0.47 deleterious_low_confidence(0.04) possibly_damaging(0.673) TCGA-AA-3492-01 3 49314017 49314017 G T C3orf62 Missense_Mutation p.H97N 0.15 tolerated(0.24) benign(0.145) TCGA-AA-3492-01 3 49457647 49457647 C A AMT Missense_Mutation p.M156I 0.36 tolerated(0.76) benign(0.036) TCGA-AA-3492-01 3 49718602 49718602 G A APEH Silent p.E456E 0.36 TCGA-AA-3492-01 3 49720279 49720279 C T APEH Silent p.C629C 0.39 TCGA-AA-3492-01 3 49725024 49725024 C T MST1 Missense_Mutation p.R107Q 0.39 tolerated(1) benign(0) TCGA-AA-3492-01 3 49770283 49770283 C T IP6K1 Missense_Mutation p.R186H 0.14 tolerated(0.8) possibly_damaging(0.617) TCGA-AA-3492-01 3 49936645 49936645 G A MST1R Silent p.L428L 0.34 TCGA-AA-3492-01 3 51431353 51431353 G - RBM15B Frame_Shift_Del p.S844Pfs*27 0.46 TCGA-AA-3492-01 3 52325920 52325920 G A GLYCTK Silent p.Q229Q 0.21 TCGA-AA-3492-01 3 52361971 52361971 T C DNAH1 Missense_Mutation p.L271P 0.38 benign(0) TCGA-AA-3492-01 3 52426961 52426961 A T DNAH1 Missense_Mutation p.N3465I 0.34 benign(0.007) TCGA-AA-3492-01 3 52522464 52522464 G A NISCH Missense_Mutation p.V986M 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3492-01 3 52524847 52524847 C T NISCH Missense_Mutation p.T1247M 0.41 tolerated(0.06) probably_damaging(0.985) TCGA-AA-3492-01 3 52597340 52597340 G - PBRM1 Intron 0.37 TCGA-AA-3492-01 3 52745875 52745875 C T NEK4 Missense_Mutation p.R815Q 0.46 tolerated(0.36) benign(0.012) TCGA-AA-3492-01 3 52813050 52813050 C T ITIH1 Missense_Mutation p.A133V 0.46 deleterious(0.02) benign(0.35) TCGA-AA-3492-01 3 53164398 53164398 G A RFT1 Silent p.L7L 0.45 TCGA-AA-3492-01 3 55508607 55508607 T A WNT5A Missense_Mutation p.N148Y 0.30 tolerated(1) benign(0.189) TCGA-AA-3492-01 3 57582866 57582866 A G ARF4 Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-AA-3492-01 3 58156440 58156440 G - FLNB Frame_Shift_Del p.E2620Rfs*? 0.30 TCGA-AA-3492-01 3 58256713 58256713 A C ABHD6 Missense_Mutation p.M149L 0.35 deleterious(0) possibly_damaging(0.615) TCGA-AA-3492-01 3 62278132 62278132 T A PTPRG Silent p.L1364L 0.16 TCGA-AA-3492-01 3 63985126 63985126 C T ATXN7 Missense_Mutation p.S910F 0.51 deleterious_low_confidence(0.01) benign(0.371) TCGA-AA-3492-01 3 64132785 64132785 C T PRICKLE2 Missense_Mutation p.A461T 0.35 tolerated(0.38) benign(0.003) TCGA-AA-3492-01 3 64644246 64644246 C T ADAMTS9 Missense_Mutation p.A301T 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 3 65342749 65342749 C A MAGI1 Missense_Mutation p.R1231S 0.30 tolerated(0.17) benign(0.005) TCGA-AA-3492-01 3 71748775 71748775 G A EIF4E3 Nonsense_Mutation p.R112* 0.45 TCGA-AA-3492-01 3 73024281 73024281 A G GXYLT2 Missense_Mutation p.I435V 0.34 tolerated_low_confidence(1) benign(0) TCGA-AA-3492-01 3 74347108 74347108 C T CNTN3 Missense_Mutation p.E801K 0.42 deleterious(0) probably_damaging(0.937) TCGA-AA-3492-01 3 74418355 74418355 G A CNTN3 Missense_Mutation p.R311C 0.18 deleterious(0) probably_damaging(0.982) TCGA-AA-3492-01 3 75787091 75787091 T - ZNF717 Frame_Shift_Del p.K561Nfs*18 0.10 TCGA-AA-3492-01 3 78683094 78683094 T C ROBO1 Missense_Mutation p.S1158G 0.40 tolerated(0.07) benign(0.112) TCGA-AA-3492-01 3 87018010 87018010 G C VGLL3 Missense_Mutation p.H223D 0.36 deleterious(0) possibly_damaging(0.696) TCGA-AA-3492-01 3 89390186 89390186 G A EPHA3 Missense_Mutation p.R312Q 0.39 deleterious(0.01) benign(0.304) TCGA-AA-3492-01 3 9594220 9594220 G A LHFPL4 Silent p.G48G 0.26 TCGA-AA-3492-01 3 97596047 97596047 C T CRYBG3 Silent p.Y55Y 0.37 TCGA-AA-3492-01 3 99514140 99514140 G T COL8A1 Silent p.G465G 0.15 TCGA-AA-3492-01 3 9959171 9959171 A G IL17RC Missense_Mutation p.S58G 0.38 tolerated_low_confidence(0.4) benign(0.153) TCGA-AA-3492-01 4 100543839 100543839 T C MTTP Missense_Mutation p.F840S 0.21 tolerated(0.36) benign(0.004) TCGA-AA-3492-01 4 101331470 101331470 T C EMCN 3'UTR 0.30 TCGA-AA-3492-01 4 1018846 1018846 C T FGFRL1 Missense_Mutation p.A409V 0.48 tolerated(0.21) benign(0.021) TCGA-AA-3492-01 4 106156458 106156458 T C TET2 Silent p.G453G 0.49 TCGA-AA-3492-01 4 106163105 106163111 TTTTTTC - TET2 Intron 0.23 TCGA-AA-3492-01 4 106816775 106816775 G A NPNT 5'UTR 0.41 TCGA-AA-3492-01 4 111464012 111464012 C T ENPEP Missense_Mutation p.S638L 0.32 tolerated(0.3) benign(0.002) TCGA-AA-3492-01 4 113568283 113568283 G A LARP7 Missense_Mutation p.E223K 0.45 tolerated(0.1) benign(0.053) TCGA-AA-3492-01 4 113970953 113970953 A - ANK2 Frame_Shift_Del p.R25Dfs*27 0.35 TCGA-AA-3492-01 4 114823952 114823952 G A ARSJ Silent p.Y426Y 0.34 TCGA-AA-3492-01 4 119475249 119475249 T A CEP170P1 RNA 0.34 TCGA-AA-3492-01 4 122599593 122599593 G A ANXA5 Missense_Mutation p.R151W 0.39 deleterious(0) probably_damaging(0.991) TCGA-AA-3492-01 4 122722785 122722786 - T EXOSC9 Intron 0.35 TCGA-AA-3492-01 4 122853606 122853606 G A TRPC3 Silent p.C269C 0.13 TCGA-AA-3492-01 4 123280777 123280777 G A KIAA1109 Missense_Mutation p.D4901N 0.43 benign(0.006) TCGA-AA-3492-01 4 123664492 123664492 T C BBS12 Missense_Mutation p.V482A 0.35 tolerated(0.17) benign(0.011) TCGA-AA-3492-01 4 123665975 123665975 C T BBS12 3'UTR 0.43 TCGA-AA-3492-01 4 125591002 125591003 - A ANKRD50 Frame_Shift_Ins p.G1144Wfs*12 0.25 TCGA-AA-3492-01 4 125593435 125593435 A T ANKRD50 Missense_Mutation p.L333I 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 4 129783051 129783052 - C JADE1 Frame_Shift_Ins p.R394Pfs*11 0.32 TCGA-AA-3492-01 4 134072678 134072678 G A PCDH10 Silent p.P461P 0.40 TCGA-AA-3492-01 4 134072775 134072775 G A PCDH10 Missense_Mutation p.A494T 0.33 deleterious(0.01) possibly_damaging(0.485) TCGA-AA-3492-01 4 1389465 1389465 G A CRIPAK Missense_Mutation p.C389Y 0.31 tolerated_low_confidence(0.77) possibly_damaging(0.588) TCGA-AA-3492-01 4 140811120 140811120 C T MAML3 Silent p.Q490Q 0.46 TCGA-AA-3492-01 4 141555300 141555300 C T TBC1D9 Missense_Mutation p.A850T 0.39 tolerated(0.14) benign(0.367) TCGA-AA-3492-01 4 141590150 141590150 G A TBC1D9 Silent p.Y503Y 0.31 TCGA-AA-3492-01 4 144336782 144336783 - A GAB1 Frame_Shift_Ins p.E78Rfs*3 0.28 TCGA-AA-3492-01 4 144796596 144796596 G A GYPE Intron 0.12 TCGA-AA-3492-01 4 144796618 144796618 T C GYPE Intron 0.18 TCGA-AA-3492-01 4 146467936 146467936 C T SMAD1 Missense_Mutation p.A286V 0.48 tolerated(0.19) benign(0.021) TCGA-AA-3492-01 4 147561898 147561898 C T POU4F2 Missense_Mutation p.R390C 0.36 deleterious(0) possibly_damaging(0.787) TCGA-AA-3492-01 4 152638077 152638077 G T PET112 Missense_Mutation p.S197R 0.38 deleterious(0) probably_damaging(0.961) TCGA-AA-3492-01 4 153864661 153864661 G T FHDC1 Missense_Mutation p.R151M 0.42 deleterious(0.01) possibly_damaging(0.86) TCGA-AA-3492-01 4 154624772 154624773 - T TLR2 Frame_Shift_Ins p.S240Ffs*7 0.29 TCGA-AA-3492-01 4 155254101 155254101 A G DCHS2 Silent p.L588L 0.36 TCGA-AA-3492-01 4 155411505 155411505 C T DCHS2 Missense_Mutation p.V335I 0.36 tolerated(1) benign(0.003) TCGA-AA-3492-01 4 155507375 155507375 G A FGA Silent p.N402N 0.37 TCGA-AA-3492-01 4 156651491 156651491 T C GUCY1A3 3'UTR 0.31 TCGA-AA-3492-01 4 156696150 156696150 G A GUCY1B3 Silent p.Q36Q 0.40 TCGA-AA-3492-01 4 156860679 156860679 G T CTSO Nonsense_Mutation p.C132* 0.55 TCGA-AA-3492-01 4 15707248 15707248 C G BST1 Missense_Mutation p.S100C 0.54 deleterious(0.02) possibly_damaging(0.868) TCGA-AA-3492-01 4 162463842 162463842 G T FSTL5 Missense_Mutation p.P340H 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3492-01 4 164506987 164506987 G A MARCH1 Nonsense_Mutation p.Q113* 0.41 TCGA-AA-3492-01 4 167656103 167656103 T C SPOCK3 Missense_Mutation p.D427G 0.36 tolerated_low_confidence(0.2) unknown(0) TCGA-AA-3492-01 4 167810296 167810296 T G SPOCK3 Silent p.R195R 0.38 TCGA-AA-3492-01 4 169317134 169317134 A G DDX60L Silent p.T1211T 0.52 TCGA-AA-3492-01 4 169362596 169362596 G T DDX60L Missense_Mutation p.L396M 0.33 deleterious(0.03) probably_damaging(0.927) TCGA-AA-3492-01 4 169931337 169931337 A G CBR4 5'UTR 0.18 TCGA-AA-3492-01 4 170634339 170634339 C T CLCN3 Silent p.S753S 0.42 TCGA-AA-3492-01 4 174450334 174450334 C T HAND2 Missense_Mutation p.S36N 0.16 tolerated(0.39) benign(0.002) TCGA-AA-3492-01 4 17625364 17625364 C A MED28 Silent p.S160S 0.27 TCGA-AA-3492-01 4 17690071 17690071 C T FAM184B Silent p.Q524Q 0.09 TCGA-AA-3492-01 4 177037057 177037057 C T WDR17 Silent p.G102G 0.34 TCGA-AA-3492-01 4 177136812 177136812 A G ASB5 Missense_Mutation p.L310S 0.31 tolerated(0.17) possibly_damaging(0.87) TCGA-AA-3492-01 4 17836014 17836015 - A NCAPG Frame_Shift_Ins p.I662Nfs*7 0.35 TCGA-AA-3492-01 4 1803662 1803662 C T FGFR3 Silent p.D280D 0.11 TCGA-AA-3492-01 4 1825465 1825465 G A LETM1 Missense_Mutation p.S413L 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 4 183673092 183673092 G A TENM3 Missense_Mutation p.V1257I 0.36 tolerated(0.14) benign(0.007) TCGA-AA-3492-01 4 186066193 186066193 C A SLC25A4 Nonsense_Mutation p.C129* 0.31 TCGA-AA-3492-01 4 186299472 186299472 G A LRP2BP 5'UTR 0.28 TCGA-AA-3492-01 4 1980638 1980638 G A WHSC1 3'UTR 0.42 TCGA-AA-3492-01 4 20568891 20568891 T C SLIT2 Missense_Mutation p.V911A 0.46 tolerated(0.21) benign(0.42) TCGA-AA-3492-01 4 20619145 20619145 A G SLIT2 Missense_Mutation p.D1407G 0.50 deleterious(0.04) possibly_damaging(0.505) TCGA-AA-3492-01 4 22425907 22425907 C T GPR125 Silent p.A504A 0.12 TCGA-AA-3492-01 4 2306971 2306971 A G ZFYVE28 Missense_Mutation p.C366R 0.42 tolerated_low_confidence(0.07) benign(0.275) TCGA-AA-3492-01 4 24529610 24529610 T C DHX15 Silent p.E775E 0.17 TCGA-AA-3492-01 4 2514311 2514311 G A RNF4 Missense_Mutation p.A121T 0.43 tolerated(0.62) benign(0.001) TCGA-AA-3492-01 4 3430399 3430399 A G RGS12 Missense_Mutation p.K1176E 0.40 deleterious(0) possibly_damaging(0.524) TCGA-AA-3492-01 4 3445854 3445854 C - HGFAC Frame_Shift_Del p.R190Gfs*57 0.32 TCGA-AA-3492-01 4 3494851 3494851 G C DOK7 Missense_Mutation p.A380P 0.36 tolerated(0.37) possibly_damaging(0.645) TCGA-AA-3492-01 4 36134908 36134908 G A ARAP2 Missense_Mutation p.L1123F 0.34 deleterious(0) probably_damaging(0.933) TCGA-AA-3492-01 4 3768739 3768739 A G ADRA2C Missense_Mutation p.T136A 0.42 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 4 38800243 38800243 T - TLR1 Frame_Shift_Del p.K70Nfs*2 0.26 TCGA-AA-3492-01 4 38829097 38829097 T - TLR6 Frame_Shift_Del p.E667Kfs*65 0.29 TCGA-AA-3492-01 4 44450240 44450240 G A KCTD8 Missense_Mutation p.R101W 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 4 44709846 44709846 T C GNPDA2 Missense_Mutation p.Q231R 0.54 tolerated_low_confidence(0.07) possibly_damaging(0.902) TCGA-AA-3492-01 4 47427844 47427844 G A GABRB1 Missense_Mutation p.E412K 0.44 tolerated(0.65) benign(0.017) TCGA-AA-3492-01 4 48114499 48114499 G A TXK Nonsense_Mutation p.R69* 0.38 TCGA-AA-3492-01 4 48485877 48485877 C T SLC10A4 Missense_Mutation p.P100L 0.59 deleterious(0.02) possibly_damaging(0.527) TCGA-AA-3492-01 4 52895004 52895004 A - SGCB Frame_Shift_Del p.F171Lfs*25 0.32 TCGA-AA-3492-01 4 54439821 54439821 G A LNX1 Missense_Mutation p.R117C 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 4 54966761 54966761 G T GSX2 Missense_Mutation p.G84W 0.39 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-AA-3492-01 4 57301637 57301637 G T PPAT Missense_Mutation p.L3M 0.30 tolerated_low_confidence(0.09) benign(0.024) TCGA-AA-3492-01 4 5830264 5830264 C T CRMP1 Silent p.R585R 0.35 TCGA-AA-3492-01 4 62813885 62813886 - T LPHN3 Frame_Shift_Ins p.W832Lfs*13 0.27 TCGA-AA-3492-01 4 656372 656372 C T PDE6B Silent p.I599I 0.43 TCGA-AA-3492-01 4 66231681 66231681 T C EPHA5 Silent p.S673S 0.32 TCGA-AA-3492-01 4 69184446 69184446 G A YTHDC1 Nonsense_Mutation p.R575* 0.32 TCGA-AA-3492-01 4 69199112 69199112 T A YTHDC1 Missense_Mutation p.E296V 0.35 deleterious(0.04) benign(0.201) TCGA-AA-3492-01 4 69327553 69327553 G T TMPRSS11E Missense_Mutation p.R9M 0.36 tolerated(0.1) possibly_damaging(0.838) TCGA-AA-3492-01 4 7043972 7043972 A G CCDC96 Missense_Mutation p.Y232H 0.33 deleterious(0.01) possibly_damaging(0.635) TCGA-AA-3492-01 4 7056692 7056692 C T TADA2B Missense_Mutation p.R392C 0.42 deleterious(0.03) probably_damaging(0.964) TCGA-AA-3492-01 4 73935226 73935226 A T COX18 Silent p.S47S 0.35 TCGA-AA-3492-01 4 74124065 74124065 G A ANKRD17 Silent p.G107G 0.11 TCGA-AA-3492-01 4 74735475 74735475 T C CXCL1 Missense_Mutation p.S64P 0.12 tolerated(1) benign(0.002) TCGA-AA-3492-01 4 76715054 76715054 G A USO1 Silent p.Q486Q 0.48 TCGA-AA-3492-01 4 77003375 77003375 T C ART3 Silent p.S156S 0.51 TCGA-AA-3492-01 4 7774513 7774513 G A AFAP1 Intron 0.28 TCGA-AA-3492-01 4 79847804 79847804 A T PAQR3 Missense_Mutation p.H191Q 0.21 tolerated(0.07) benign(0.246) TCGA-AA-3492-01 4 80246415 80246415 C A NAA11 Missense_Mutation p.S206I 0.31 deleterious(0) benign(0.361) TCGA-AA-3492-01 4 81123252 81123252 G C PRDM8 Missense_Mutation p.Q212H 0.41 tolerated(0.36) benign(0.069) TCGA-AA-3492-01 4 82056407 82056407 C G PRKG2 Missense_Mutation p.V560L 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 4 8224591 8224591 T C SH3TC1 Silent p.N379N 0.40 TCGA-AA-3492-01 4 85758091 85758091 A G WDFY3 Silent p.V189V 0.25 TCGA-AA-3492-01 4 8588793 8588793 C T GPR78 Silent p.L265L 0.41 TCGA-AA-3492-01 4 87643433 87643433 A G PTPN13 Missense_Mutation p.E485G 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 4 88903687 88903687 G T SPP1 Missense_Mutation p.S195I 0.46 deleterious(0) probably_damaging(0.932) TCGA-AA-3492-01 4 89363798 89363798 T G HERC6 3'UTR 0.48 TCGA-AA-3492-01 4 89671629 89671629 T C FAM13A Missense_Mutation p.Y629C 0.50 deleterious(0) probably_damaging(0.99) TCGA-AA-3492-01 4 9785349 9785349 G C DRD5 3'UTR 0.35 TCGA-AA-3492-01 4 9785421 9785421 G T DRD5 3'UTR 0.25 TCGA-AA-3492-01 4 99339820 99339820 T C RAP1GDS1 Missense_Mutation p.I352T 0.31 tolerated(0.06) benign(0.018) TCGA-AA-3492-01 5 100192015 100192015 T G ST8SIA4 Silent p.R197R 0.37 TCGA-AA-3492-01 5 10250391 10250391 T C CCT5 5'UTR 0.40 TCGA-AA-3492-01 5 102895778 102895778 G A NUDT12 Missense_Mutation p.H58Y 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3492-01 5 109940905 109940905 T - TMEM232 Frame_Shift_Del p.N394Ifs*13 0.26 TCGA-AA-3492-01 5 110560178 110560178 G A CAMK4 5'UTR 0.15 TCGA-AA-3492-01 5 110679797 110679797 A C CAMK4 Missense_Mutation p.K79N 0.32 deleterious(0) probably_damaging(0.977) TCGA-AA-3492-01 5 111540159 111540159 C T EPB41L4A Missense_Mutation p.R430H 0.28 deleterious(0.01) benign(0.024) TCGA-AA-3492-01 5 111643158 111643158 G C EPB41L4A Missense_Mutation p.D43E 0.36 tolerated(0.07) benign(0.02) TCGA-AA-3492-01 5 112770528 112770528 G A TSSK1B Silent p.D3D 0.70 TCGA-AA-3492-01 5 121188071 121188071 G A FTMT Missense_Mutation p.G138D 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 5 1225469 1225469 A G SLC6A18 5'Flank 0.50 TCGA-AA-3492-01 5 122720714 122720714 A - CEP120 Frame_Shift_Del p.L565* 0.26 TCGA-AA-3492-01 5 122893193 122893193 C A CSNK1G3 Missense_Mutation p.P75H 0.32 deleterious(0) probably_damaging(0.96) TCGA-AA-3492-01 5 126993806 126993806 G T CTXN3 3'UTR 0.43 TCGA-AA-3492-01 5 127420075 127420075 C G SLC12A2 Missense_Mutation p.F143L 0.36 tolerated(0.06) probably_damaging(0.993) TCGA-AA-3492-01 5 127610310 127610311 - C FBN2 Frame_Shift_Ins p.F2554Vfs*4 0.33 TCGA-AA-3492-01 5 127641315 127641315 G A FBN2 Silent p.C1854C 0.22 TCGA-AA-3492-01 5 131534590 131534590 C T P4HA2 Silent p.P429P 0.09 TCGA-AA-3492-01 5 132015575 132015575 C T IL4 Missense_Mutation p.A118V 0.46 tolerated(0.13) probably_damaging(0.987) TCGA-AA-3492-01 5 132585213 132585213 G A FSTL4 Silent p.T261T 0.51 TCGA-AA-3492-01 5 134871130 134871130 G A NEUROG1 Missense_Mutation p.A84V 0.33 tolerated(0.26) benign(0.339) TCGA-AA-3492-01 5 134871155 134871155 C T NEUROG1 Missense_Mutation p.G76S 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3492-01 5 135231247 135231247 A G IL9 Silent p.A49A 0.47 TCGA-AA-3492-01 5 138282776 138282776 G A SIL1 3'UTR 0.47 TCGA-AA-3492-01 5 138643806 138643806 T - MATR3 Frame_Shift_Del p.F236Lfs*176 0.30 TCGA-AA-3492-01 5 138713733 138713733 C T SLC23A1 Missense_Mutation p.G466R 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 5 139744113 139744113 T C SLC4A9 Silent p.D542D 0.37 TCGA-AA-3492-01 5 139887523 139887523 C T ANKHD1 Silent p.G1235G 0.24 TCGA-AA-3492-01 5 140048746 140048746 G A WDR55 Missense_Mutation p.R248H 0.46 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 5 140176782 140176782 G A PCDHA2 Missense_Mutation p.V745M 0.41 tolerated_low_confidence(0.07) benign(0.364) TCGA-AA-3492-01 5 140215501 140215501 C T PCDHA7 Silent p.H511H 0.07 TCGA-AA-3492-01 5 140221181 140221181 G A PCDHA8 Missense_Mutation p.R92H 0.36 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-AA-3492-01 5 140230309 140230309 C T PCDHA9 Silent p.S743S 0.43 TCGA-AA-3492-01 5 140232588 140232588 C T PCDHA9 Intron 0.50 TCGA-AA-3492-01 5 140242952 140242952 G A AC005609.1 Silent p.C8C 0.36 TCGA-AA-3492-01 5 140307487 140307487 C - PCDHAC1 Frame_Shift_Del p.E339Nfs*5 0.27 TCGA-AA-3492-01 5 140389602 140389602 T - PCDHAC1 3'UTR 0.26 TCGA-AA-3492-01 5 140474939 140474939 G A PCDHB2 Missense_Mutation p.D189N 0.34 deleterious_low_confidence(0.03) benign(0.052) TCGA-AA-3492-01 5 140475976 140475976 C T PCDHB2 Silent p.G534G 0.34 TCGA-AA-3492-01 5 140482378 140482378 G A PCDHB3 Silent p.R715R 0.10 TCGA-AA-3492-01 5 140503548 140503548 G A PCDHB4 Silent p.T656T 0.24 TCGA-AA-3492-01 5 140516480 140516480 G A PCDHB5 Silent p.S488S 0.30 TCGA-AA-3492-01 5 140536862 140536862 C T PCDHB17 Missense_Mutation p.T429I 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.733) TCGA-AA-3492-01 5 140554050 140554050 C T PCDHB7 Missense_Mutation p.A545V 0.42 tolerated_low_confidence(0.06) benign(0.217) TCGA-AA-3492-01 5 140557961 140557961 G A PCDHB8 Missense_Mutation p.E116K 0.12 deleterious_low_confidence(0.05) benign(0.031) TCGA-AA-3492-01 5 140558697 140558697 C T PCDHB8 Missense_Mutation p.A361V 0.16 deleterious_low_confidence(0.03) benign(0.017) TCGA-AA-3492-01 5 140559401 140559401 G A PCDHB8 Missense_Mutation p.D596N 0.11 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-AA-3492-01 5 140573601 140573601 G A PCDHB10 Silent p.P492P 0.17 TCGA-AA-3492-01 5 140590120 140590120 G A PCDHB12 Silent p.V547V 0.46 TCGA-AA-3492-01 5 140615676 140615676 G T PCDHB18 RNA 0.45 TCGA-AA-3492-01 5 140626856 140626856 G T PCDHB15 Silent p.A570A 0.53 TCGA-AA-3492-01 5 140725883 140725883 G A PCDHGA3 Silent p.A761A 0.49 TCGA-AA-3492-01 5 140736676 140736676 G A PCDHGA4 Missense_Mutation p.A637T 0.43 deleterious_low_confidence(0.05) benign(0.127) TCGA-AA-3492-01 5 140741229 140741229 G A PCDHGB2 Silent p.A509A 0.50 TCGA-AA-3492-01 5 140755539 140755539 G A PCDHGA6 Missense_Mutation p.R630H 0.30 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-AA-3492-01 5 140763833 140763833 C T PCDHGA7 Missense_Mutation p.S456F 0.58 tolerated_low_confidence(0.06) benign(0.077) TCGA-AA-3492-01 5 140773980 140773980 G A PCDHGA8 Missense_Mutation p.A534T 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-3492-01 5 140801102 140801103 - T PCDHGA11 Frame_Shift_Ins p.L105Ffs*24 0.32 TCGA-AA-3492-01 5 140812413 140812413 C T PCDHGA12 Missense_Mutation p.A696V 0.27 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-AA-3492-01 5 140865412 140865412 C T PCDHGC4 Silent p.G224G 0.44 TCGA-AA-3492-01 5 140870459 140870459 A G PCDHGC5 Missense_Mutation p.H551R 0.39 tolerated(0.08) benign(0.197) TCGA-AA-3492-01 5 141027617 141027617 C T FCHSD1 Missense_Mutation p.R208H 0.50 deleterious(0.02) possibly_damaging(0.581) TCGA-AA-3492-01 5 141051778 141051778 A G ARAP3 Silent p.A492A 0.37 TCGA-AA-3492-01 5 145719544 145719544 G A POU4F3 Missense_Mutation p.R185H 0.27 deleterious(0) probably_damaging(0.99) TCGA-AA-3492-01 5 148206319 148206319 G A ADRB2 5'UTR 0.57 TCGA-AA-3492-01 5 150072822 150072822 T C RBM22 Missense_Mutation p.D320G 0.46 tolerated(0.17) benign(0.014) TCGA-AA-3492-01 5 150905452 150905452 G - FAT2 Frame_Shift_Del p.Y3462Tfs*16 0.28 TCGA-AA-3492-01 5 150914014 150914014 A G FAT2 Missense_Mutation p.V3128A 0.34 possibly_damaging(0.734) TCGA-AA-3492-01 5 150945575 150945575 C T FAT2 Missense_Mutation p.R973Q 0.42 benign(0.015) TCGA-AA-3492-01 5 151202194 151202194 A G GLRA1 3'UTR 0.26 TCGA-AA-3492-01 5 156589467 156589467 T C FAM71B Silent p.K603K 0.39 TCGA-AA-3492-01 5 156608073 156608073 C T ITK Missense_Mutation p.R29C 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 5 156649954 156649954 C T ITK Missense_Mutation p.R193W 0.34 tolerated(0.19) possibly_damaging(0.67) TCGA-AA-3492-01 5 156712446 156712446 G A CYFIP2 Silent p.Q25Q 0.31 TCGA-AA-3492-01 5 156899856 156899856 C T NIPAL4 Missense_Mutation p.P430L 0.13 tolerated(0.22) benign(0.003) TCGA-AA-3492-01 5 156915359 156915359 C T ADAM19 Missense_Mutation p.G822R 0.33 tolerated(0.57) benign(0.004) TCGA-AA-3492-01 5 157240157 157240157 C A CLINT1 Missense_Mutation p.R144M 0.09 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 5 158139316 158139316 T C EBF1 Silent p.V465V 0.29 TCGA-AA-3492-01 5 158526546 158526546 A G EBF1 5'UTR 0.21 TCGA-AA-3492-01 5 161300301 161300301 T G GABRA1 Missense_Mutation p.L145R 0.30 deleterious(0.04) benign(0.031) TCGA-AA-3492-01 5 161580482 161580482 T A GABRG2 3'UTR 0.30 TCGA-AA-3492-01 5 162943584 162943584 C T MAT2B Missense_Mutation p.A196V 0.28 tolerated(0.06) possibly_damaging(0.578) TCGA-AA-3492-01 5 169477304 169477304 A C DOCK2 Missense_Mutation p.E1372D 0.36 deleterious(0.02) possibly_damaging(0.841) TCGA-AA-3492-01 5 169507193 169507193 T A DOCK2 Missense_Mutation p.S1731R 0.46 tolerated_low_confidence(0.05) probably_damaging(0.983) TCGA-AA-3492-01 5 169533005 169533005 G A FOXI1 Missense_Mutation p.S15N 0.42 tolerated(0.25) possibly_damaging(0.678) TCGA-AA-3492-01 5 169533081 169533081 C T FOXI1 Silent p.G40G 0.23 TCGA-AA-3492-01 5 169533242 169533242 C T FOXI1 Missense_Mutation p.P94L 0.28 deleterious(0.03) benign(0.054) TCGA-AA-3492-01 5 169680211 169680211 C T LCP2 Missense_Mutation p.S386N 0.28 tolerated(0.39) benign(0.002) TCGA-AA-3492-01 5 170738445 170738445 A G TLX3 Missense_Mutation p.M240V 0.41 deleterious(0.03) benign(0.003) TCGA-AA-3492-01 5 174869427 174869427 G A DRD1 Missense_Mutation p.R226W 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 5 175798778 175798778 G T ARL10 Missense_Mutation p.Q205H 0.37 tolerated(1) possibly_damaging(0.83) TCGA-AA-3492-01 5 176056548 176056548 G A SNCB Silent p.G36G 0.24 TCGA-AA-3492-01 5 176081992 176081992 C T TSPAN17 Missense_Mutation p.P185S 0.44 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 5 176316437 176316437 G A HK3 Silent p.L287L 0.52 TCGA-AA-3492-01 5 176396009 176396009 A G UIMC1 Silent p.G249G 0.34 TCGA-AA-3492-01 5 176734539 176734539 A G MXD3 3'UTR 0.51 TCGA-AA-3492-01 5 176915145 176915145 C A PDLIM7 Missense_Mutation p.G325V 0.21 deleterious(0) probably_damaging(0.989) TCGA-AA-3492-01 5 176930086 176930086 C T DOK3 3'Flank 0.10 TCGA-AA-3492-01 5 176938860 176938860 T C DDX41 Missense_Mutation p.M601V 0.28 tolerated(0.93) benign(0.138) TCGA-AA-3492-01 5 177059145 177059145 T C RP11-1277A3.2 Intron 0.49 TCGA-AA-3492-01 5 178564784 178564785 - G ADAMTS2 Frame_Shift_Ins p.H646Pfs*31 0.34 TCGA-AA-3492-01 5 179260127 179260127 T G SQSTM1 Missense_Mutation p.S284A 0.38 tolerated(0.42) benign(0.002) TCGA-AA-3492-01 5 179290805 179290805 G A TBC1D9B Silent p.S1132S 0.50 TCGA-AA-3492-01 5 179442365 179442365 A G RNF130 Intron 0.21 TCGA-AA-3492-01 5 180486652 180486652 C T BTNL9 Silent p.S466S 0.44 TCGA-AA-3492-01 5 180684388 180684388 C A TRIM52 3'UTR 0.49 TCGA-AA-3492-01 5 21802412 21802412 T C CDH12 Missense_Mutation p.S374G 0.33 tolerated(0.17) benign(0.119) TCGA-AA-3492-01 5 23527208 23527208 C T PRDM9 Missense_Mutation p.R671W 0.42 deleterious(0) benign(0.445) TCGA-AA-3492-01 5 26988321 26988321 C G CDH9 Silent p.L40L 0.32 TCGA-AA-3492-01 5 32711790 32711790 C T NPR3 5'UTR 0.13 TCGA-AA-3492-01 5 32791330 32791330 C A NPR3 3'UTR 0.25 TCGA-AA-3492-01 5 33576744 33576744 C T ADAMTS12 Silent p.L1129L 0.44 TCGA-AA-3492-01 5 33596127 33596127 G A ADAMTS12 Missense_Mutation p.R856C 0.45 deleterious(0.04) possibly_damaging(0.717) TCGA-AA-3492-01 5 33937451 33937451 C T RXFP3 Silent p.C202C 0.34 TCGA-AA-3492-01 5 33938214 33938214 G - RXFP3 Frame_Shift_Del p.R459Afs*31 0.44 TCGA-AA-3492-01 5 34004797 34004797 G A AMACR Missense_Mutation p.A145V 0.40 tolerated(0.17) benign(0.328) TCGA-AA-3492-01 5 35670408 35670408 T C SPEF2 Intron 0.36 TCGA-AA-3492-01 5 36038001 36038001 A G UGT3A2 Missense_Mutation p.M398T 0.23 deleterious(0.01) benign(0.375) TCGA-AA-3492-01 5 36249634 36249634 T C RANBP3L 3'UTR 0.29 TCGA-AA-3492-01 5 37835845 37835845 T G GDNF 5'UTR 0.45 TCGA-AA-3492-01 5 38923329 38923329 A - OSMR Frame_Shift_Del p.T617Qfs*20 0.26 TCGA-AA-3492-01 5 39119694 39119694 G T FYB Missense_Mutation p.D737E 0.36 deleterious(0.03) possibly_damaging(0.872) TCGA-AA-3492-01 5 41203329 41203329 C T C6 Missense_Mutation p.A2T 0.43 tolerated(0.52) benign(0.004) TCGA-AA-3492-01 5 41203342 41203342 G A C6 5'UTR 0.36 TCGA-AA-3492-01 5 477499 477499 C T SLC9A3 Missense_Mutation p.V570M 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-AA-3492-01 5 5146446 5146446 A G ADAMTS16 Missense_Mutation p.T127A 0.09 tolerated(0.41) benign(0.403) TCGA-AA-3492-01 5 52402939 52402940 - G MOCS2 Frame_Shift_Ins p.L23Ifs*5 0.44 TCGA-AA-3492-01 5 54563594 54563594 T C DHX29 Silent p.R1117R 0.38 TCGA-AA-3492-01 5 54696073 54696073 C T SKIV2L2 Missense_Mutation p.R769C 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 5 57752993 57753012 AGATAGTGCACCAACCTGCA GATAGTGCACCAACCTGC PLK2 Splice_Site p.X335_splice 0.23 TCGA-AA-3492-01 5 58511667 58511667 A T PDE4D Missense_Mutation p.S195T 0.40 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-AA-3492-01 5 61653535 61653536 - TG KIF2A Frame_Shift_Ins p.R229* 0.50 TCGA-AA-3492-01 5 61676970 61676970 A - KIF2A Frame_Shift_Del p.K681Rfs*4 0.15 TCGA-AA-3492-01 5 61688029 61688029 T - DIMT1 Frame_Shift_Del p.N254Tfs*12 0.28 TCGA-AA-3492-01 5 6312464 6312464 G A CTD-2324F15.2 RNA 0.26 TCGA-AA-3492-01 5 6449291 6449291 C T UBE2QL1 Silent p.R95R 0.67 TCGA-AA-3492-01 5 64766837 64766837 T A ADAMTS6 Missense_Mutation p.D77V 0.10 tolerated(0.17) benign(0.02) TCGA-AA-3492-01 5 66396405 66396405 G A MAST4 Missense_Mutation p.R352H 0.41 probably_damaging(1) TCGA-AA-3492-01 5 66459345 66459345 C T MAST4 Silent p.S1446S 0.31 TCGA-AA-3492-01 5 66462086 66462086 A G MAST4 Missense_Mutation p.Q2360R 0.40 benign(0.133) TCGA-AA-3492-01 5 68710030 68710030 C T RAD17 Silent p.L653L 0.45 TCGA-AA-3492-01 5 74130328 74130328 C T FAM169A Missense_Mutation p.C138Y 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 5 76933027 76933027 G A OTP Silent p.G22G 0.31 TCGA-AA-3492-01 5 7863064 7863064 G T FASTKD3 Missense_Mutation p.P524Q 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3492-01 5 79089266 79089266 G A CMYA5 Silent p.P3932P 0.46 TCGA-AA-3492-01 5 79375849 79375849 A C THBS4 Missense_Mutation p.K878T 0.39 deleterious(0) probably_damaging(0.977) TCGA-AA-3492-01 5 80088585 80088585 A - MSH3 Frame_Shift_Del p.N861Mfs*6 0.30 TCGA-AA-3492-01 5 81571879 81571879 T - RPS23 3'UTR 0.29 TCGA-AA-3492-01 5 82876266 82876266 C T VCAN 3'UTR 0.43 TCGA-AA-3492-01 5 83680269 83680269 G A EDIL3 5'UTR 0.27 TCGA-AA-3492-01 5 86690499 86690499 T C CCNH Intron 0.33 TCGA-AA-3492-01 5 89992864 89992864 C T GPR98 Missense_Mutation p.P2686S 0.27 possibly_damaging(0.901) TCGA-AA-3492-01 5 90398055 90398055 T A GPR98 Nonsense_Mutation p.Y6110* 0.10 TCGA-AA-3492-01 5 90445963 90445963 G A GPR98 Silent p.T6183T 0.42 TCGA-AA-3492-01 5 9054362 9054362 G A SEMA5A Silent p.G842G 0.31 TCGA-AA-3492-01 5 92924092 92924092 G A NR2F1 Silent p.A311A 0.51 TCGA-AA-3492-01 5 94050578 94050578 T - MCTP1 Frame_Shift_Del p.K875Rfs*4 0.44 TCGA-AA-3492-01 5 94782312 94782312 A - FAM81B Frame_Shift_Del p.K315Nfs*18 0.28 TCGA-AA-3492-01 5 96342201 96342201 T G LNPEP Missense_Mutation p.L673V 0.35 tolerated(0.06) benign(0.118) TCGA-AA-3492-01 5 96506947 96506947 G A RIOK2 Missense_Mutation p.P248S 0.35 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 5 98128902 98128902 C T RGMB Silent p.S294S 0.46 TCGA-AA-3492-01 6 100395834 100395834 T - MCHR2 Frame_Shift_Del p.T66Qfs*18 0.26 TCGA-AA-3492-01 6 100896497 100896498 - G SIM1 Frame_Shift_Ins p.F201Lfs*62 0.39 TCGA-AA-3492-01 6 101075489 101075489 C T ASCC3 Missense_Mutation p.S1540N 0.29 deleterious(0.01) benign(0.258) TCGA-AA-3492-01 6 102337644 102337644 G A GRIK2 Missense_Mutation p.V552I 0.34 deleterious(0.03) benign(0.277) TCGA-AA-3492-01 6 10415166 10415166 G A TFAP2A Intron 0.38 TCGA-AA-3492-01 6 107110935 107110935 G C QRSL1 Missense_Mutation p.G414A 0.40 deleterious(0.03) possibly_damaging(0.898) TCGA-AA-3492-01 6 10724814 10724814 G T TMEM14C 5'UTR 0.79 TCGA-AA-3492-01 6 108616262 108616262 C A LACE1 5'UTR 0.53 TCGA-AA-3492-01 6 109480510 109480510 T - CEP57L1 Frame_Shift_Del p.F288Lfs*3 0.24 TCGA-AA-3492-01 6 110760012 110760012 C T SLC22A16 Missense_Mutation p.A408T 0.42 tolerated(0.16) benign(0.265) TCGA-AA-3492-01 6 110948305 110948305 C T CDK19 Silent p.S230S 0.40 TCGA-AA-3492-01 6 111709271 111709271 C T REV3L Missense_Mutation p.A294T 0.41 tolerated(0.57) benign(0.001) TCGA-AA-3492-01 6 111726705 111726705 G A REV3L Missense_Mutation p.A178V 0.52 deleterious(0.01) possibly_damaging(0.812) TCGA-AA-3492-01 6 11213599 11213599 C T NEDD9 Missense_Mutation p.G125D 0.35 deleterious(0.03) benign(0.183) TCGA-AA-3492-01 6 117250037 117250037 C T RFX6 Silent p.H838H 0.38 TCGA-AA-3492-01 6 118803041 118803041 T C CEP85L Missense_Mutation p.E552G 0.43 deleterious(0) possibly_damaging(0.86) TCGA-AA-3492-01 6 119525967 119525967 A G MAN1A1 Missense_Mutation p.M358T 0.29 tolerated(0.41) benign(0.074) TCGA-AA-3492-01 6 125541258 125541258 C T TPD52L1 Silent p.D18D 0.39 TCGA-AA-3492-01 6 127611273 127611273 T - ECHDC1 Frame_Shift_Del p.N222Mfs*3 0.32 TCGA-AA-3492-01 6 127796974 127796974 T C SOGA3 Missense_Mutation p.M733V 0.47 tolerated(0.4) benign(0.023) TCGA-AA-3492-01 6 128841548 128841548 G - PTPRK 5'UTR 0.25 TCGA-AA-3492-01 6 129513865 129513865 G A LAMA2 Missense_Mutation p.G550D 0.33 tolerated(0.08) benign(0.102) TCGA-AA-3492-01 6 132201030 132201030 T C ENPP1 Silent p.I652I 0.52 TCGA-AA-3492-01 6 132891880 132891880 T C TAAR6 Silent p.Y140Y 0.40 TCGA-AA-3492-01 6 134305716 134305716 T A TBPL1 Missense_Mutation p.Y130N 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 6 135784443 135784443 T C AHI1 Missense_Mutation p.T251A 0.50 tolerated(0.97) benign(0.004) TCGA-AA-3492-01 6 138635001 138635001 C A KIAA1244 Silent p.R1424R 0.48 TCGA-AA-3492-01 6 139106424 139106424 G A CCDC28A Missense_Mutation p.R218H 0.47 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 6 1394943 1394943 G A FOXF2 Missense_Mutation p.R395H 0.84 deleterious(0) possibly_damaging(0.457) TCGA-AA-3492-01 6 139563668 139563668 C A TXLNB Missense_Mutation p.D684Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-AA-3492-01 6 142741092 142741092 G A GPR126 Missense_Mutation p.R1057Q 0.40 deleterious(0) benign(0.173) TCGA-AA-3492-01 6 144205486 144205486 T C ZC2HC1B Missense_Mutation p.F25S 0.38 deleterious(0) probably_damaging(0.991) TCGA-AA-3492-01 6 144508186 144508186 G A STX11 Missense_Mutation p.R141H 0.50 tolerated(0.1) benign(0.007) TCGA-AA-3492-01 6 144759979 144759980 - CC UTRN Frame_Shift_Ins p.L449Pfs*6 0.29 TCGA-AA-3492-01 6 144768390 144768390 A G UTRN Missense_Mutation p.N553S 0.44 tolerated(0.58) benign(0.008) TCGA-AA-3492-01 6 145948646 145948646 G A EPM2A Missense_Mutation p.P301L 0.38 deleterious(0) probably_damaging(0.991) TCGA-AA-3492-01 6 145956466 145956466 G T EPM2A Silent p.P211P 0.34 TCGA-AA-3492-01 6 146351094 146351094 C - GRM1 Frame_Shift_Del p.P149Qfs*11 0.34 TCGA-AA-3492-01 6 146625884 146625884 C T GRM1 Missense_Mutation p.T363M 0.33 tolerated(0.11) benign(0.219) TCGA-AA-3492-01 6 147103195 147103195 G A ADGB Missense_Mutation p.S1301N 0.26 tolerated(0.4) benign(0.013) TCGA-AA-3492-01 6 147525743 147525743 G A STXBP5 Silent p.Q25Q 0.42 TCGA-AA-3492-01 6 150023084 150023084 T C LATS1 Missense_Mutation p.E60G 0.47 tolerated_low_confidence(0.09) possibly_damaging(0.907) TCGA-AA-3492-01 6 152128987 152128987 C T ESR1 5'UTR 0.40 TCGA-AA-3492-01 6 152129249 152129249 G A ESR1 Missense_Mutation p.A68T 0.50 tolerated(0.42) benign(0.02) TCGA-AA-3492-01 6 152539401 152539401 T G SYNE1 Missense_Mutation p.E7394D 0.43 probably_damaging(0.961) TCGA-AA-3492-01 6 152623111 152623111 C T SYNE1 Missense_Mutation p.A5812T 0.41 probably_damaging(0.995) TCGA-AA-3492-01 6 152702375 152702375 G T SYNE1 Silent p.A2925A 0.45 TCGA-AA-3492-01 6 152702485 152702485 A C SYNE1 Missense_Mutation p.S2889A 0.42 probably_damaging(0.986) TCGA-AA-3492-01 6 154567848 154567848 G A IPCEF1 Silent p.G41G 0.37 TCGA-AA-3492-01 6 155750040 155750040 G - NOX3 Frame_Shift_Del p.Q345Rfs*49 0.29 TCGA-AA-3492-01 6 158449920 158449920 G A SYNJ2 Missense_Mutation p.R116H 0.28 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 6 159654859 159654859 G A FNDC1 Silent p.A1105A 0.50 TCGA-AA-3492-01 6 160169553 160169553 G T WTAP Intron 0.17 TCGA-AA-3492-01 6 160477541 160477541 C T IGF2R Missense_Mutation p.T927M 0.54 tolerated(0.17) benign(0.025) TCGA-AA-3492-01 6 160888678 160888678 C T LPAL2 RNA 0.25 TCGA-AA-3492-01 6 1610843 1610843 C T FOXC1 Nonsense_Mutation p.Q55* 0.46 TCGA-AA-3492-01 6 16327751 16327751 G A ATXN1 Missense_Mutation p.P264L 0.87 deleterious(0) benign(0.44) TCGA-AA-3492-01 6 166579282 166579282 A G T Missense_Mutation p.V173A 0.33 deleterious(0) probably_damaging(0.97) TCGA-AA-3492-01 6 167453517 167453517 C A FGFR1OP 3'UTR 0.44 TCGA-AA-3492-01 6 167590596 167590596 T C TCP10L2 Missense_Mutation p.S158P 0.19 tolerated(0.1) probably_damaging(0.997) TCGA-AA-3492-01 6 167754764 167754764 C T TTLL2 Missense_Mutation p.S459L 0.43 tolerated(0.64) benign(0.033) TCGA-AA-3492-01 6 167791469 167791469 A G TCP10 Missense_Mutation p.S131P 0.10 tolerated(0.1) probably_damaging(0.997) TCGA-AA-3492-01 6 167796383 167796383 C T TCP10 5'UTR 0.43 TCGA-AA-3492-01 6 168352529 168352529 C T MLLT4 Missense_Mutation p.R1492C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3492-01 6 168377601 168377601 C - RP3-470B24.5 RNA 0.44 TCGA-AA-3492-01 6 168430173 168430173 T A KIF25 Intron 0.55 TCGA-AA-3492-01 6 169626379 169626379 G A THBS2 Nonsense_Mutation p.R812* 0.34 TCGA-AA-3492-01 6 169637723 169637723 G A THBS2 Missense_Mutation p.R433C 0.38 deleterious(0) probably_damaging(0.931) TCGA-AA-3492-01 6 170059571 170059571 C T WDR27 Silent p.L391L 0.27 TCGA-AA-3492-01 6 21597680 21597680 C T SOX4 3'UTR 0.41 TCGA-AA-3492-01 6 22570021 22570021 C T HDGFL1 Missense_Mutation p.R73C 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 6 22570176 22570176 C T HDGFL1 Silent p.G124G 0.42 TCGA-AA-3492-01 6 24436941 24436941 G - GPLD1 Frame_Shift_Del p.L741* 0.29 TCGA-AA-3492-01 6 24651245 24651245 A C TDP2 Missense_Mutation p.L287W 0.80 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 6 25087114 25087114 A G CMAHP RNA 0.12 TCGA-AA-3492-01 6 25726746 25726746 G A HIST1H2AA Nonsense_Mutation p.R4* 0.77 TCGA-AA-3492-01 6 26017448 26017448 T G HIST1H1A Missense_Mutation p.K171N 0.38 deleterious(0.03) unknown(0) TCGA-AA-3492-01 6 26032176 26032176 T - HIST1H3B Frame_Shift_Del p.K38Sfs*25 0.44 TCGA-AA-3492-01 6 26033417 26033417 G A HIST1H2AB Missense_Mutation p.A127V 0.49 tolerated_low_confidence(0.18) benign(0) TCGA-AA-3492-01 6 28228189 28228189 G A NKAPL Missense_Mutation p.R347H 0.39 tolerated(0.07) possibly_damaging(0.813) TCGA-AA-3492-01 6 28253417 28253417 G A PGBD1 Silent p.L162L 0.89 TCGA-AA-3492-01 6 29910692 29910692 C T HLA-A Nonsense_Mutation p.Q78* 0.61 TCGA-AA-3492-01 6 29976907 29976907 G A ZNRD1-AS1 RNA 0.78 TCGA-AA-3492-01 6 30594887 30594887 C A ATAT1 5'UTR 0.08 TCGA-AA-3492-01 6 31931240 31931240 T C SKIV2L Missense_Mutation p.V485A 0.35 deleterious(0) possibly_damaging(0.502) TCGA-AA-3492-01 6 31939472 31939472 G A DXO 5'UTR 0.88 TCGA-AA-3492-01 6 32012172 32012172 C T TNXB Missense_Mutation p.R179H 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3492-01 6 32138492 32138492 T C AGPAT1 Intron 0.70 TCGA-AA-3492-01 6 33239445 33239445 G A VPS52 Missense_Mutation p.A3V 0.83 tolerated_low_confidence(0.15) unknown(0) TCGA-AA-3492-01 6 33255425 33255425 C T WDR46 Missense_Mutation p.E232K 0.09 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 6 33284168 33284168 C T ZBTB22 Missense_Mutation p.G176R 0.63 deleterious(0.01) benign(0.436) TCGA-AA-3492-01 6 33284426 33284426 C A ZBTB22 Missense_Mutation p.G90C 0.09 deleterious(0) probably_damaging(0.989) TCGA-AA-3492-01 6 33660635 33660637 AGG - ITPR3 In_Frame_Del p.E2532del 0.79 TCGA-AA-3492-01 6 34101300 34101300 C T GRM4 5'UTR 0.83 TCGA-AA-3492-01 6 35056499 35056499 G A ANKS1A 3'UTR 0.75 TCGA-AA-3492-01 6 35912065 35912065 T - SLC26A8 Frame_Shift_Del p.N842Mfs*2 0.46 TCGA-AA-3492-01 6 36651975 36651975 G A CDKN1A Missense_Mutation p.D33N 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3492-01 6 36926993 36926993 C T PI16 Missense_Mutation p.R82C 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 6 37623535 37623535 C T MDGA1 Missense_Mutation p.D174N 0.86 tolerated(0.15) benign(0.025) TCGA-AA-3492-01 6 39162424 39162424 G A KCNK5 Silent p.F137F 0.92 TCGA-AA-3492-01 6 39893509 39893509 C T MOCS1 Missense_Mutation p.A111T 0.18 deleterious(0.02) possibly_damaging(0.863) TCGA-AA-3492-01 6 401482 401482 G A IRF4 Silent p.T268T 0.92 TCGA-AA-3492-01 6 41558062 41558062 A G FOXP4 Missense_Mutation p.T471A 0.45 deleterious(0) probably_damaging(0.983) TCGA-AA-3492-01 6 41874942 41874942 T C MED20 Silent p.T169T 0.28 TCGA-AA-3492-01 6 41884655 41884655 C T MED20 Missense_Mutation p.E13K 0.10 deleterious(0.04) probably_damaging(0.956) TCGA-AA-3492-01 6 42130745 42130745 G A RP1-139D8.6 Missense_Mutation p.A48T 0.77 tolerated_low_confidence(0.4) benign(0.005) TCGA-AA-3492-01 6 42196196 42196196 C T TRERF1 Missense_Mutation p.D1164N 0.27 tolerated_low_confidence(0.14) possibly_damaging(0.555) TCGA-AA-3492-01 6 42236494 42236494 C T TRERF1 Missense_Mutation p.G279R 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AA-3492-01 6 43270467 43270467 C T SLC22A7 Silent p.L451L 0.78 TCGA-AA-3492-01 6 43307998 43307998 T - ZNF318 Frame_Shift_Del p.A1247Lfs*13 0.25 TCGA-AA-3492-01 6 43612813 43612813 C T RSPH9 5'UTR 0.81 TCGA-AA-3492-01 6 44272036 44272036 G A AARS2 Missense_Mutation p.A630V 0.25 tolerated(0.45) benign(0) TCGA-AA-3492-01 6 47624260 47624260 C A GPR111 Missense_Mutation p.P13H 0.82 deleterious_low_confidence(0) benign(0.001) TCGA-AA-3492-01 6 47846577 47846577 A G PTCHD4 Missense_Mutation p.V668A 0.40 tolerated(0.6) benign(0.149) TCGA-AA-3492-01 6 49485177 49485177 C T GLYATL3 Missense_Mutation p.A74V 0.83 tolerated(0.13) probably_damaging(0.917) TCGA-AA-3492-01 6 5086680 5086680 C T PPP1R3G Missense_Mutation p.R321C 0.83 tolerated(0.05) benign(0.003) TCGA-AA-3492-01 6 51640664 51640664 G A PKHD1 Silent p.A2832A 0.84 TCGA-AA-3492-01 6 51889974 51889974 G - PKHD1 Frame_Shift_Del p.P1545Qfs*47 0.24 TCGA-AA-3492-01 6 51915064 51915064 G T PKHD1 Missense_Mutation p.P724T 0.12 deleterious(0.01) possibly_damaging(0.839) TCGA-AA-3492-01 6 56417016 56417016 G A DST Missense_Mutation p.T2902M 0.82 possibly_damaging(0.803) TCGA-AA-3492-01 6 56880052 56880052 G A BEND6 Silent p.S140S 0.30 TCGA-AA-3492-01 6 57046917 57046917 G A BAG2 Silent p.Q67Q 0.94 TCGA-AA-3492-01 6 64421546 64421546 G A PHF3 Silent p.Q1354Q 0.50 TCGA-AA-3492-01 6 656815 656815 C T HUS1B Missense_Mutation p.A44T 0.76 tolerated(0.43) benign(0.004) TCGA-AA-3492-01 6 70065709 70065712 ACAG - BAI3 Splice_Site p.X1186_splice 0.48 TCGA-AA-3492-01 6 71570124 71570124 T - SMAP1 3'UTR 0.38 TCGA-AA-3492-01 6 72806842 72806842 C A RIMS1 Missense_Mutation p.R146S 0.43 deleterious(0) probably_damaging(0.985) TCGA-AA-3492-01 6 73815037 73815037 T C KCNQ5 Silent p.L326L 0.42 TCGA-AA-3492-01 6 74079367 74079367 A G OOEP Missense_Mutation p.L50S 0.36 deleterious(0.05) possibly_damaging(0.629) TCGA-AA-3492-01 6 74183253 74183253 G T MTO1 Missense_Mutation p.R234M 0.48 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 6 74354234 74354234 C T SLC17A5 Missense_Mutation p.A63T 0.27 deleterious(0.02) probably_damaging(1) TCGA-AA-3492-01 6 75853056 75853056 C T COL12A1 Missense_Mutation p.S1580N 0.39 probably_damaging(0.997) TCGA-AA-3492-01 6 76550986 76550986 G A MYO6 Missense_Mutation p.C236Y 0.56 deleterious(0) unknown(0) TCGA-AA-3492-01 6 79671404 79671404 A G PHIP Intron 0.37 TCGA-AA-3492-01 6 79679609 79679609 C T PHIP Missense_Mutation p.D1050N 0.35 deleterious(0) probably_damaging(0.989) TCGA-AA-3492-01 6 84563415 84563415 T C RIPPLY2 Missense_Mutation p.Y33H 0.41 tolerated(0.51) benign(0.002) TCGA-AA-3492-01 6 85472342 85472342 C T TBX18 Silent p.P139P 0.35 TCGA-AA-3492-01 6 87969851 87969852 TT - ZNF292 Frame_Shift_Del p.L2169Efs*9 0.32 TCGA-AA-3492-01 6 87971608 87971608 T - ZNF292 3'UTR 0.45 TCGA-AA-3492-01 6 88854009 88854009 C T CNR1 Missense_Mutation p.V329M 0.24 tolerated(0.23) benign(0.02) TCGA-AA-3492-01 6 93969172 93969172 G A EPHA7 Silent p.Y608Y 0.40 TCGA-AA-3492-01 6 94120768 94120768 C T EPHA7 Missense_Mutation p.A95T 0.43 deleterious(0) possibly_damaging(0.845) TCGA-AA-3492-01 6 97715753 97715753 C T MMS22L Missense_Mutation p.D275N 0.38 tolerated(0.61) probably_damaging(0.996) TCGA-AA-3492-01 6 99283616 99283616 G A POU3F2 Silent p.A289A 0.43 TCGA-AA-3492-01 7 100064697 100064697 A G TSC22D4 Missense_Mutation p.L358P 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 7 100075543 100075543 G - TSC22D4 Frame_Shift_Del p.P40Rfs*36 0.33 TCGA-AA-3492-01 7 100183602 100183602 G A LRCH4 Missense_Mutation p.A41V 0.41 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 7 100187332 100187332 G - FBXO24 Frame_Shift_Del p.A25Qfs*28 0.34 TCGA-AA-3492-01 7 100280988 100280988 T C GIGYF1 Missense_Mutation p.Q711R 0.40 tolerated(0.71) unknown(0) TCGA-AA-3492-01 7 100464237 100464237 C A SLC12A9 3'UTR 0.33 TCGA-AA-3492-01 7 100485725 100485725 C T SRRT Missense_Mutation p.P797S 0.41 tolerated(0.56) possibly_damaging(0.538) TCGA-AA-3492-01 7 100488460 100488461 TC - ACHE 3'UTR 0.27 TCGA-AA-3492-01 7 100732845 100732845 G A TRIM56 Missense_Mutation p.R751H 0.26 deleterious_low_confidence(0.03) probably_damaging(0.975) TCGA-AA-3492-01 7 100779023 100779023 C T SERPINE1 Missense_Mutation p.A343V 0.30 tolerated(1) possibly_damaging(0.727) TCGA-AA-3492-01 7 100817730 100817730 G A NAT16 Intron 0.31 TCGA-AA-3492-01 7 103629748 103629748 G A RELN Missense_Mutation p.A19V 0.36 deleterious_low_confidence(0.04) benign(0.005) TCGA-AA-3492-01 7 103848415 103848415 G T ORC5 5'UTR 0.54 TCGA-AA-3492-01 7 104731690 104731691 - A KMT2E Frame_Shift_Ins p.T553Nfs*4 0.29 TCGA-AA-3492-01 7 104844139 104844139 C T SRPK2 Silent p.E55E 0.46 TCGA-AA-3492-01 7 105255076 105255076 C T ATXN7L1 Missense_Mutation p.V569M 0.42 tolerated(0.06) probably_damaging(0.988) TCGA-AA-3492-01 7 105516845 105516845 C T ATXN7L1 Missense_Mutation p.A54T 0.35 deleterious(0.01) probably_damaging(0.942) TCGA-AA-3492-01 7 106523500 106523500 C T PIK3CG Silent p.D884D 0.41 TCGA-AA-3492-01 7 106841953 106841953 T C HBP1 3'UTR 0.33 TCGA-AA-3492-01 7 107115558 107115558 T - GPR22 Frame_Shift_Del p.L353* 0.26 TCGA-AA-3492-01 7 108204617 108204617 T G THAP5 3'UTR 0.36 TCGA-AA-3492-01 7 1097497 1097497 G A GPR146 Missense_Mutation p.A116T 0.30 tolerated(1) benign(0.005) TCGA-AA-3492-01 7 110763042 110763042 C G LRRN3 Missense_Mutation p.Q72E 0.19 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 7 110765153 110765153 G T LRRN3 3'UTR 0.27 TCGA-AA-3492-01 7 1133136 1133136 C T GPER1 3'UTR 0.50 TCGA-AA-3492-01 7 113518314 113518314 G T PPP1R3A Missense_Mutation p.P945T 0.10 tolerated(0.33) benign(0.002) TCGA-AA-3492-01 7 11485742 11485742 C T THSD7A Missense_Mutation p.A1004T 0.42 deleterious(0.04) benign(0.283) TCGA-AA-3492-01 7 116963078 116963078 C T WNT2 5'UTR 0.47 TCGA-AA-3492-01 7 117242907 117242907 C T CFTR Missense_Mutation p.L883F 0.35 tolerated(0.15) benign(0.143) TCGA-AA-3492-01 7 117424458 117424458 G - CTTNBP2 Frame_Shift_Del p.L707Wfs*54 0.25 TCGA-AA-3492-01 7 117432253 117432253 C A CTTNBP2 Missense_Mutation p.G333W 0.46 deleterious(0.02) possibly_damaging(0.765) TCGA-AA-3492-01 7 120382645 120382646 - A KCND2 Frame_Shift_Ins p.T488Nfs*13 0.23 TCGA-AA-3492-01 7 120629804 120629804 C T CPED1 Silent p.A43A 0.38 TCGA-AA-3492-01 7 120971879 120971879 G - WNT16 Frame_Shift_Del p.G167Afs*17 0.33 TCGA-AA-3492-01 7 121653522 121653522 A G PTPRZ1 Silent p.S1474S 0.40 TCGA-AA-3492-01 7 121985686 121985686 T - CADPS2 Frame_Shift_Del p.N1185Tfs*15 0.25 TCGA-AA-3492-01 7 122341936 122341936 A - RNF148 Frame_Shift_Del p.L290* 0.24 TCGA-AA-3492-01 7 122635630 122635630 G A TAS2R16 Missense_Mutation p.T20I 0.43 tolerated(0.37) benign(0.047) TCGA-AA-3492-01 7 12270014 12270014 G A TMEM106B Splice_Site p.X195_splice 0.44 TCGA-AA-3492-01 7 123303084 123303084 G A LMOD2 Missense_Mutation p.G482R 0.25 tolerated(0.2) probably_damaging(0.921) TCGA-AA-3492-01 7 123599840 123599841 AA - SPAM1 Frame_Shift_Del p.K450Rfs*3 0.26 TCGA-AA-3492-01 7 12409268 12409268 T A VWDE Missense_Mutation p.L888F 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-AA-3492-01 7 127224337 127224337 C A GCC1 Missense_Mutation p.E300D 0.40 tolerated(0.27) possibly_damaging(0.612) TCGA-AA-3492-01 7 127233819 127233819 G T FSCN3 5'UTR 0.42 TCGA-AA-3492-01 7 127569248 127569248 A - SND1 Frame_Shift_Del p.A514Qfs*156 0.29 TCGA-AA-3492-01 7 128370057 128370057 C A FAM71F1 Missense_Mutation p.L319M 0.35 tolerated_low_confidence(0.22) possibly_damaging(0.526) TCGA-AA-3492-01 7 128399863 128399863 A G CALU Missense_Mutation p.I208M 0.34 deleterious(0.02) possibly_damaging(0.878) TCGA-AA-3492-01 7 128494108 128494108 G T FLNC Nonsense_Mutation p.E2189* 0.48 TCGA-AA-3492-01 7 128807667 128807667 C G TSPAN33 Missense_Mutation p.I268M 0.33 deleterious(0.03) benign(0.031) TCGA-AA-3492-01 7 128852004 128852004 C - SMO Frame_Shift_Del p.P694Lfs*82 0.23 TCGA-AA-3492-01 7 129847780 129847780 G - SSMEM1 Frame_Shift_Del p.V11* 0.26 TCGA-AA-3492-01 7 130138080 130138080 A T MEST Missense_Mutation p.D147V 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 7 131190746 131190746 C T PODXL Missense_Mutation p.A454T 0.19 tolerated(1) benign(0.097) TCGA-AA-3492-01 7 131866884 131866884 G A PLXNA4 Missense_Mutation p.A1075V 0.12 tolerated(1) benign(0.024) TCGA-AA-3492-01 7 134261135 134261135 C A AKR1B15 Missense_Mutation p.P260T 0.26 deleterious(0.03) probably_damaging(0.919) TCGA-AA-3492-01 7 135421930 135421930 C T FAM180A Missense_Mutation p.A32T 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3492-01 7 139281492 139281492 C G HIPK2 Missense_Mutation p.E896D 0.42 tolerated(0.41) benign(0.007) TCGA-AA-3492-01 7 139661841 139661841 C T TBXAS1 Missense_Mutation p.R362W 0.46 deleterious(0.02) possibly_damaging(0.849) TCGA-AA-3492-01 7 13978747 13978747 A G ETV1 Silent p.N120N 0.38 TCGA-AA-3492-01 7 140045705 140045705 G A SLC37A3 Silent p.L364L 0.36 TCGA-AA-3492-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.51 deleterious(0) probably_damaging(0.967) TCGA-AA-3492-01 7 141450255 141450255 C T SSBP1 3'UTR 0.29 TCGA-AA-3492-01 7 141727537 141727537 T C MGAM Splice_Site p.X407_splice 0.55 TCGA-AA-3492-01 7 142460327 142460327 G A PRSS1 Missense_Mutation p.S167N 0.06 deleterious(0) benign(0.242) TCGA-AA-3492-01 7 143807097 143807097 C T OR2A2 Missense_Mutation p.T141M 0.45 tolerated(0.08) benign(0.134) TCGA-AA-3492-01 7 148801663 148801663 G A ZNF425 Silent p.L434L 0.41 TCGA-AA-3492-01 7 148895546 148895546 T C ZNF282 Missense_Mutation p.I96T 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 7 149191395 149191395 C A ZNF746 Missense_Mutation p.G75V 0.41 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 7 149462414 149462414 C T ZNF467 Missense_Mutation p.A393T 0.47 tolerated(0.32) benign(0.001) TCGA-AA-3492-01 7 149547335 149547335 T A ZNF862 Missense_Mutation p.F342Y 0.13 deleterious_low_confidence(0.01) probably_damaging(0.912) TCGA-AA-3492-01 7 149558039 149558039 C T ZNF862 Missense_Mutation p.T597M 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3492-01 7 150034285 150034285 C T LRRC61 Missense_Mutation p.P112L 0.39 tolerated(0.62) benign(0.004) TCGA-AA-3492-01 7 150093791 150093791 G A ZNF775 Nonsense_Mutation p.W74* 0.45 TCGA-AA-3492-01 7 150094171 150094171 G A ZNF775 Missense_Mutation p.R201H 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3492-01 7 150171329 150171329 G A GIMAP8 Silent p.P304P 0.32 TCGA-AA-3492-01 7 150644716 150644716 G A KCNH2 Silent p.S981S 0.31 TCGA-AA-3492-01 7 150748000 150748000 C T ASIC3 Silent p.Y323Y 0.53 TCGA-AA-3492-01 7 150768285 150768285 G A SLC4A2 Missense_Mutation p.V626M 0.35 deleterious(0) possibly_damaging(0.83) TCGA-AA-3492-01 7 152132948 152132948 C T KMT2C 5'UTR 0.23 TCGA-AA-3492-01 7 156451680 156451680 C T RNF32 Intron 0.22 TCGA-AA-3492-01 7 156742843 156742843 C A NOM1 Missense_Mutation p.P138T 0.24 tolerated(0.39) possibly_damaging(0.641) TCGA-AA-3492-01 7 157177558 157177558 T C DNAJB6 Intron 0.37 TCGA-AA-3492-01 7 157929358 157929358 G A PTPRN2 Missense_Mutation p.L388F 0.33 tolerated(0.58) benign(0.002) TCGA-AA-3492-01 7 16832522 16832522 T - AGR2 3'UTR 0.33 TCGA-AA-3492-01 7 1784587 1784587 C T ELFN1 Missense_Mutation p.R119W 0.44 deleterious(0) probably_damaging(0.949) TCGA-AA-3492-01 7 17854457 17854457 C A SNX13 Missense_Mutation p.K688N 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-AA-3492-01 7 18993899 18993899 A T HDAC9 Intron 0.47 TCGA-AA-3492-01 7 19156604 19156604 T C TWIST1 Missense_Mutation p.N114S 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 7 20180461 20180461 C G MACC1 3'UTR 0.38 TCGA-AA-3492-01 7 20198786 20198786 G T MACC1 Missense_Mutation p.L400I 0.38 deleterious(0.01) possibly_damaging(0.556) TCGA-AA-3492-01 7 21956482 21956482 C T CDCA7L Missense_Mutation p.A19T 0.29 tolerated(0.1) possibly_damaging(0.536) TCGA-AA-3492-01 7 23749911 23749911 G A STK31 Missense_Mutation p.V3I 0.54 tolerated_low_confidence(0.1) benign(0.013) TCGA-AA-3492-01 7 24789341 24789341 T A DFNA5 Missense_Mutation p.D18V 0.46 deleterious(0) probably_damaging(0.969) TCGA-AA-3492-01 7 25218831 25218831 G T C7orf31 Missense_Mutation p.L33I 0.36 deleterious(0.03) possibly_damaging(0.453) TCGA-AA-3492-01 7 2629713 2629713 C T IQCE Missense_Mutation p.A406V 0.43 deleterious(0.03) benign(0.142) TCGA-AA-3492-01 7 27237692 27237692 C T HOXA13 3'UTR 0.41 TCGA-AA-3492-01 7 29440434 29440434 C T CHN2 Missense_Mutation p.A189V 0.54 tolerated(0.35) benign(0.033) TCGA-AA-3492-01 7 30490974 30490974 C T NOD1 Missense_Mutation p.A687T 0.38 tolerated(0.12) benign(0.046) TCGA-AA-3492-01 7 31683391 31683391 G A CCDC129 Missense_Mutation p.A829T 0.37 tolerated(0.36) benign(0.046) TCGA-AA-3492-01 7 32526806 32526806 A G LSM5 3'UTR 0.35 TCGA-AA-3492-01 7 33054440 33054440 C T NT5C3A Missense_Mutation p.D305N 0.37 deleterious(0) benign(0.268) TCGA-AA-3492-01 7 34094862 34094862 C T BMPER Nonsense_Mutation p.R292* 0.36 TCGA-AA-3492-01 7 34867050 34867050 C T NPSR1 Silent p.S172S 0.41 TCGA-AA-3492-01 7 36446141 36446141 C T ANLN Missense_Mutation p.A280V 0.62 tolerated(0.21) benign(0.006) TCGA-AA-3492-01 7 38670984 38670984 G T AMPH 5'UTR 0.56 TCGA-AA-3492-01 7 39612407 39612407 T C YAE1D1 3'UTR 0.54 TCGA-AA-3492-01 7 4009038 4009038 G T SDK1 Missense_Mutation p.A566S 0.14 tolerated(0.06) possibly_damaging(0.802) TCGA-AA-3492-01 7 4056808 4056808 G A SDK1 Missense_Mutation p.R809H 0.56 tolerated(0.09) probably_damaging(0.988) TCGA-AA-3492-01 7 43916225 43916225 C T URGCP 3'UTR 0.32 TCGA-AA-3492-01 7 44027844 44027844 C T POLR2J4 Intron 0.64 TCGA-AA-3492-01 7 44058714 44058714 C T POLR2J4 RNA 0.34 TCGA-AA-3492-01 7 44120343 44120343 G A POLM Missense_Mutation p.H121Y 0.14 tolerated(0.12) possibly_damaging(0.617) TCGA-AA-3492-01 7 44156467 44156467 G A POLD2 Silent p.L243L 0.45 TCGA-AA-3492-01 7 44197730 44197730 G T GCK Intron 0.45 TCGA-AA-3492-01 7 44578608 44578608 C T NPC1L1 Missense_Mutation p.R463H 0.35 tolerated(0.07) benign(0.104) TCGA-AA-3492-01 7 45743024 45743024 G A ADCY1 Missense_Mutation p.R835H 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 7 45744187 45744187 T C ADCY1 Missense_Mutation p.V930A 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3492-01 7 4798841 4798841 C T FOXK1 Silent p.S468S 0.40 TCGA-AA-3492-01 7 4841360 4841360 G A RADIL Silent p.S922S 0.37 TCGA-AA-3492-01 7 48494763 48494763 T C ABCA13 Missense_Mutation p.L4232P 0.26 probably_damaging(1) TCGA-AA-3492-01 7 49815235 49815235 C T VWC2 Silent p.D68D 0.44 TCGA-AA-3492-01 7 50169348 50169348 A C C7orf72 Missense_Mutation p.K229N 0.39 tolerated(0.28) benign(0.06) TCGA-AA-3492-01 7 50468261 50468261 G A IKZF1 Missense_Mutation p.S457N 0.42 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 7 5104175 5104175 A G RBAK Missense_Mutation p.H363R 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 7 51095669 51095669 G A COBL Missense_Mutation p.R1042C 0.40 tolerated(0.22) benign(0.001) TCGA-AA-3492-01 7 51097054 51097054 G A COBL Missense_Mutation p.A580V 0.34 tolerated(0.46) benign(0.002) TCGA-AA-3492-01 7 5541340 5541340 A G FBXL18 Missense_Mutation p.V187A 0.14 deleterious(0) probably_damaging(0.995) TCGA-AA-3492-01 7 55560052 55560052 C T VOPP1 Missense_Mutation p.R84H 0.53 deleterious(0) probably_damaging(0.996) TCGA-AA-3492-01 7 5765046 5765046 T - RNF216 Frame_Shift_Del p.K471Nfs*19 0.28 TCGA-AA-3492-01 7 63726569 63726570 - A ZNF679 Frame_Shift_Ins p.Y189Ifs*20 0.30 TCGA-AA-3492-01 7 64388164 64388164 C T ZNF273 Missense_Mutation p.A153V 0.46 tolerated(1) benign(0.001) TCGA-AA-3492-01 7 64389075 64389075 C T ZNF273 Missense_Mutation p.P457S 0.14 deleterious(0.05) probably_damaging(0.998) TCGA-AA-3492-01 7 65225415 65225415 T C SNORA22 3'Flank 0.30 TCGA-AA-3492-01 7 65225416 65225416 G A SNORA22 3'Flank 0.30 TCGA-AA-3492-01 7 65425991 65425991 T - GUSB Frame_Shift_Del p.S617Vfs*23 0.24 TCGA-AA-3492-01 7 65551741 65551741 G A ASL Missense_Mutation p.A179T 0.18 tolerated(0.13) possibly_damaging(0.883) TCGA-AA-3492-01 7 66483079 66483079 G T TYW1 Missense_Mutation p.E270D 0.39 tolerated(0.29) benign(0.001) TCGA-AA-3492-01 7 66760690 66760690 T C Y_RNA 3'Flank 0.42 TCGA-AA-3492-01 7 70255643 70255643 C - AUTS2 Frame_Shift_Del p.H1148Tfs*70 0.39 TCGA-AA-3492-01 7 72436535 72436535 G A TRIM74 Missense_Mutation p.R52C 0.28 tolerated(0.19) benign(0.052) TCGA-AA-3492-01 7 72891988 72891988 C T BAZ1B Silent p.G601G 0.44 TCGA-AA-3492-01 7 72957941 72957941 G T BCL7B Silent p.R68R 0.56 TCGA-AA-3492-01 7 73013893 73013893 G A MLXIPL Missense_Mutation p.S345L 0.37 tolerated(0.51) benign(0.003) TCGA-AA-3492-01 7 73254804 73254804 C T WBSCR27 Missense_Mutation p.G110S 0.46 deleterious(0.04) benign(0.445) TCGA-AA-3492-01 7 73639039 73639039 C T LAT2 Silent p.Y233Y 0.38 TCGA-AA-3492-01 7 75610430 75610430 G A POR Missense_Mutation p.R194Q 0.28 tolerated(0.06) benign(0.443) TCGA-AA-3492-01 7 75614492 75614492 G T POR Missense_Mutation p.Q455H 0.17 deleterious(0.01) benign(0.205) TCGA-AA-3492-01 7 7645613 7645614 - A MIOS Frame_Shift_Ins p.L817Ifs*5 0.29 TCGA-AA-3492-01 7 76796987 76796987 T C CCDC146 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) unknown(0) TCGA-AA-3492-01 7 76826111 76826111 G A FGL2 Nonsense_Mutation p.Q269* 0.25 TCGA-AA-3492-01 7 77408037 77408037 A T RSBN1L Missense_Mutation p.D698V 0.44 deleterious(0.03) benign(0.297) TCGA-AA-3492-01 7 77797260 77797260 T C MAGI2 Missense_Mutation p.T857A 0.38 deleterious(0.01) benign(0.257) TCGA-AA-3492-01 7 82583046 82583046 G - PCLO Frame_Shift_Del p.P2408Lfs*36 0.43 TCGA-AA-3492-01 7 8475354 8475354 C T NXPH1 Missense_Mutation p.A4V 0.32 tolerated(0.6) benign(0) TCGA-AA-3492-01 7 86416148 86416148 G A GRM3 Missense_Mutation p.R347H 0.21 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 7 86493775 86493775 T - GRM3 3'UTR 0.32 TCGA-AA-3492-01 7 87081080 87081080 A G ABCB4 Silent p.G189G 0.51 TCGA-AA-3492-01 7 90377001 90377001 A T CDK14 Silent p.T107T 0.42 TCGA-AA-3492-01 7 91603085 91603085 A - AKAP9 Frame_Shift_Del p.K39Rfs*17 0.20 TCGA-AA-3492-01 7 91727084 91727084 T C AKAP9 Missense_Mutation p.V3528A 0.42 benign(0.02) TCGA-AA-3492-01 7 91863867 91863867 G A KRIT1 Silent p.S295S 0.46 TCGA-AA-3492-01 7 92147474 92147474 C T PEX1 Silent p.T151T 0.28 TCGA-AA-3492-01 7 92166036 92166036 A G RBM48 Intron 0.32 TCGA-AA-3492-01 7 92732292 92732292 C T SAMD9 Missense_Mutation p.R1040H 0.34 tolerated(0.05) benign(0.287) TCGA-AA-3492-01 7 92733748 92733748 G A SAMD9 Missense_Mutation p.P555S 0.44 deleterious(0) probably_damaging(0.989) TCGA-AA-3492-01 7 92735036 92735036 C T SAMD9 Silent p.P125P 0.42 TCGA-AA-3492-01 7 92926106 92926106 T G CCDC132 Missense_Mutation p.F407C 0.48 deleterious(0) possibly_damaging(0.494) TCGA-AA-3492-01 7 94214634 94214635 - A SGCE 3'UTR 0.43 TCGA-AA-3492-01 7 94294321 94294321 C A PEG10 3'UTR 0.35 TCGA-AA-3492-01 7 94296621 94296621 A T PEG10 3'UTR 0.47 TCGA-AA-3492-01 7 94298574 94298574 A G PEG10 3'UTR 0.48 TCGA-AA-3492-01 7 95157550 95157550 G C ASB4 Missense_Mutation p.E305Q 0.43 tolerated(0.27) benign(0.268) TCGA-AA-3492-01 7 966266 966266 G A ADAP1 Silent p.H76H 0.26 TCGA-AA-3492-01 7 96810590 96810591 - T ACN9 3'UTR 0.29 TCGA-AA-3492-01 7 98547352 98547352 C T TRRAP Nonsense_Mutation p.R1668* 0.43 TCGA-AA-3492-01 7 98575937 98575937 A G TRRAP Missense_Mutation p.H2823R 0.39 benign(0.1) TCGA-AA-3492-01 7 99055926 99055926 G - ATP5J2 3'UTR 0.37 TCGA-AA-3492-01 7 99226916 99226916 G A ZSCAN25 Missense_Mutation p.G303D 0.41 tolerated(0.52) benign(0.062) TCGA-AA-3492-01 7 99695817 99695817 C T MCM7 Missense_Mutation p.V273I 0.38 tolerated(1) benign(0.001) TCGA-AA-3492-01 8 100115313 100115313 G A VPS13B Missense_Mutation p.G182D 0.38 tolerated(1) benign(0) TCGA-AA-3492-01 8 104831719 104831719 A G RIMS2 Intron 0.52 TCGA-AA-3492-01 8 107531302 107531302 A G OXR1 Missense_Mutation p.N53S 0.41 tolerated_low_confidence(0.23) benign(0.011) TCGA-AA-3492-01 8 10892779 10892779 G A XKR6 Intron 0.38 TCGA-AA-3492-01 8 113241029 113241029 A - CSMD3 Frame_Shift_Del p.F3640Lfs*61 0.32 TCGA-AA-3492-01 8 113303798 113303798 G T CSMD3 Missense_Mutation p.S2972Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 8 113418944 113418944 G T CSMD3 Missense_Mutation p.T1873K 0.36 deleterious(0) probably_damaging(0.988) TCGA-AA-3492-01 8 116427307 116427307 G C TRPS1 Silent p.P943P 0.36 TCGA-AA-3492-01 8 117784025 117784025 C T UTP23 Missense_Mutation p.R232W 0.09 deleterious(0) possibly_damaging(0.72) TCGA-AA-3492-01 8 117862999 117862999 T C RAD21 Missense_Mutation p.Q493R 0.44 tolerated(0.38) benign(0.004) TCGA-AA-3492-01 8 117868492 117868492 C T RAD21 Missense_Mutation p.V284I 0.32 tolerated(0.41) benign(0.014) TCGA-AA-3492-01 8 117950633 117950633 G A AARD Missense_Mutation p.A51T 0.56 tolerated(0.24) probably_damaging(0.913) TCGA-AA-3492-01 8 118811797 118811797 C T EXT1 3'UTR 0.36 TCGA-AA-3492-01 8 122641423 122641423 A - HAS2 Frame_Shift_Del p.L53Wfs*19 0.25 TCGA-AA-3492-01 8 123965567 123965567 C T ZHX2 Missense_Mutation p.A606V 0.24 tolerated(0.27) benign(0.002) TCGA-AA-3492-01 8 125072949 125072949 T A FER1L6 Missense_Mutation p.V1049E 0.47 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 8 125565697 125565697 C T MTSS1 Missense_Mutation p.G602R 0.45 deleterious(0.01) probably_damaging(1) TCGA-AA-3492-01 8 125989692 125989692 C T ZNF572 Silent p.G394G 0.43 TCGA-AA-3492-01 8 127569488 127569488 C T FAM84B Silent p.P49P 0.34 TCGA-AA-3492-01 8 12881497 12881497 A - KIAA1456 3'UTR 0.28 TCGA-AA-3492-01 8 12885925 12885925 A G KIAA1456 3'UTR 0.45 TCGA-AA-3492-01 8 132996544 132996544 A T EFR3A Missense_Mutation p.L578F 0.23 deleterious(0.01) possibly_damaging(0.582) TCGA-AA-3492-01 8 133899524 133899524 G T TG Missense_Mutation p.C636F 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 8 134274390 134274390 G T NDRG1 Missense_Mutation p.L76I 0.12 tolerated(0.07) possibly_damaging(0.892) TCGA-AA-3492-01 8 139675984 139675984 C A COL22A1 Splice_Site p.X1051_splice 0.41 TCGA-AA-3492-01 8 141742682 141742682 C A PTK2 Intron 0.39 TCGA-AA-3492-01 8 142368004 142368004 G A GPR20 Missense_Mutation p.A7V 0.41 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3492-01 8 143558835 143558835 C - BAI1 Frame_Shift_Del p.Q440Sfs*150 0.26 TCGA-AA-3492-01 8 143694701 143694701 G A ARC Missense_Mutation p.T311M 0.55 deleterious(0.05) probably_damaging(0.998) TCGA-AA-3492-01 8 144239715 144239715 C A LY6H Silent p.G146G 0.40 TCGA-AA-3492-01 8 144775908 144775908 C T ZNF707 Silent p.H108H 0.32 TCGA-AA-3492-01 8 144789938 144789938 C T CCDC166 Silent p.S114S 0.39 TCGA-AA-3492-01 8 144800417 144800417 T C MAPK15 Silent p.L77L 0.32 TCGA-AA-3492-01 8 144808304 144808304 C T FAM83H Silent p.L1109L 0.56 TCGA-AA-3492-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.31 TCGA-AA-3492-01 8 144997128 144997128 C T PLEC Silent p.T2460T 0.31 TCGA-AA-3492-01 8 145107140 145107140 G A OPLAH Silent p.H1131H 0.41 TCGA-AA-3492-01 8 145730690 145730690 T C GPT Missense_Mutation p.I186T 0.23 deleterious(0.03) possibly_damaging(0.887) TCGA-AA-3492-01 8 145741379 145741379 C T RECQL4 Missense_Mutation p.R375H 0.36 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 8 145758692 145758692 G A ARHGAP39 Silent p.N902N 0.33 TCGA-AA-3492-01 8 145759570 145759570 C T ARHGAP39 Silent p.T877T 0.38 TCGA-AA-3492-01 8 1719582 1719582 T C CLN8 Missense_Mutation p.V121A 0.42 deleterious(0.01) benign(0.326) TCGA-AA-3492-01 8 17228639 17228639 G A MTMR7 Missense_Mutation p.R73C 0.29 deleterious(0) possibly_damaging(0.72) TCGA-AA-3492-01 8 20110885 20110885 C T LZTS1 Missense_Mutation p.S186N 0.26 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 8 22163439 22163439 G A PIWIL2 Splice_Site p.X486_splice 0.41 TCGA-AA-3492-01 8 22212998 22212998 G A PIWIL2 Missense_Mutation p.E968K 0.50 deleterious(0) benign(0.319) TCGA-AA-3492-01 8 22267592 22267592 G A SLC39A14 Silent p.T197T 0.39 TCGA-AA-3492-01 8 22277211 22277211 G T SLC39A14 Nonstop_Mutation p.*493Yext*38 0.39 TCGA-AA-3492-01 8 22452143 22452143 C A PDLIM2 3'Flank 0.50 TCGA-AA-3492-01 8 23002105 23002105 G A TNFRSF10D Missense_Mutation p.A271V 0.36 deleterious(0.04) benign(0.048) TCGA-AA-3492-01 8 23386504 23386504 C A SLC25A37 5'UTR 0.50 TCGA-AA-3492-01 8 24772062 24772062 G A NEFM Silent p.S252S 0.37 TCGA-AA-3492-01 8 25364853 25364853 C T CDCA2 Nonsense_Mutation p.R891* 0.27 TCGA-AA-3492-01 8 26149253 26149253 C - PPP2R2A 5'Flank 0.33 TCGA-AA-3492-01 8 26365202 26365202 C T PNMA2 Missense_Mutation p.R357H 0.20 tolerated(0.38) benign(0) TCGA-AA-3492-01 8 27320630 27320630 A C CHRNA2 Missense_Mutation p.S444A 0.43 tolerated(0.76) benign(0.021) TCGA-AA-3492-01 8 29989981 29989981 G A LEPROTL1 Intron 0.38 TCGA-AA-3492-01 8 30539473 30539473 G - GSR Frame_Shift_Del p.P420Lfs*18 0.34 TCGA-AA-3492-01 8 30610592 30610592 A - UBXN8 RNA 0.30 TCGA-AA-3492-01 8 30704110 30704110 C T TEX15 Silent p.P808P 0.22 TCGA-AA-3492-01 8 37553632 37553632 G A ZNF703 Silent p.A45A 0.11 TCGA-AA-3492-01 8 37611678 37611678 T - ERLIN2 3'UTR 0.18 TCGA-AA-3492-01 8 38852953 38852953 T C TM2D2 Intron 0.37 TCGA-AA-3492-01 8 41397471 41397471 C T GINS4 Silent p.V144V 0.38 TCGA-AA-3492-01 8 41504797 41504797 C T NKX6-3 Silent p.A26A 0.21 TCGA-AA-3492-01 8 41563722 41563722 C T ANK1 Missense_Mutation p.G712D 0.45 tolerated(1) probably_damaging(0.997) TCGA-AA-3492-01 8 42262992 42262992 G T VDAC3 3'UTR 0.10 TCGA-AA-3492-01 8 42275272 42275272 G A SLC20A2 3'UTR 0.38 TCGA-AA-3492-01 8 43218315 43218315 G A AC022616.1 3'Flank 0.27 TCGA-AA-3492-01 8 48689471 48689471 T C PRKDC Missense_Mutation p.Y4038C 0.44 probably_damaging(0.979) TCGA-AA-3492-01 8 48746799 48746799 T - PRKDC Frame_Shift_Del p.R2703Gfs*13 0.32 TCGA-AA-3492-01 8 48885475 48885475 G T MCM4 Missense_Mutation p.A663S 0.08 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 8 49647813 49647813 G A EFCAB1 5'Flank 0.62 TCGA-AA-3492-01 8 55055296 55055296 A - MRPL15 Frame_Shift_Del p.N170Mfs*106 0.32 TCGA-AA-3492-01 8 61765636 61765636 A G CHD7 Missense_Mutation p.N2118D 0.28 probably_damaging(0.986) TCGA-AA-3492-01 8 665934 665934 C T ERICH1 Silent p.T32T 0.46 TCGA-AA-3492-01 8 66651776 66651776 A G PDE7A Missense_Mutation p.Y186H 0.37 tolerated(1) benign(0.002) TCGA-AA-3492-01 8 67478940 67478940 A G MYBL1 Silent p.T643T 0.33 TCGA-AA-3492-01 8 68184006 68184006 A - ARFGEF1 Frame_Shift_Del p.F501Lfs*19 0.33 TCGA-AA-3492-01 8 68430221 68430221 T C CPA6 Missense_Mutation p.H85R 0.32 tolerated(1) benign(0.083) TCGA-AA-3492-01 8 70533328 70533328 C T SULF1 Missense_Mutation p.P479L 0.46 tolerated(0.31) benign(0.003) TCGA-AA-3492-01 8 75149494 75149494 G A JPH1 Silent p.I650I 0.35 TCGA-AA-3492-01 8 75233246 75233246 G A JPH1 Missense_Mutation p.R93C 0.17 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 8 79514007 79514007 C T PKIA Missense_Mutation p.T61I 0.38 deleterious(0.04) benign(0.053) TCGA-AA-3492-01 8 8560883 8560883 C T CLDN23 3'UTR 0.50 TCGA-AA-3492-01 8 86356320 86356320 C T CA3 Missense_Mutation p.R137C 0.48 deleterious(0.03) possibly_damaging(0.475) TCGA-AA-3492-01 8 87559983 87559983 T C CPNE3 Silent p.C288C 0.38 TCGA-AA-3492-01 8 88885084 88885084 G A DCAF4L2 Silent p.L372L 0.26 TCGA-AA-3492-01 8 9414074 9414074 G A TNKS Missense_Mutation p.A209T 0.49 tolerated(0.14) probably_damaging(0.909) TCGA-AA-3492-01 8 94721991 94721991 T - FAM92A1 Intron 0.31 TCGA-AA-3492-01 8 94746730 94746730 G A RBM12B Missense_Mutation p.R637W 0.34 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-AA-3492-01 8 94797533 94797533 T A TMEM67 Missense_Mutation p.N405K 0.34 tolerated(0.13) benign(0.372) TCGA-AA-3492-01 8 95539107 95539107 C T KIAA1429 Silent p.Q455Q 0.46 TCGA-AA-3492-01 8 9565940 9565940 A - TNKS Frame_Shift_Del p.T508Hfs*33 0.29 TCGA-AA-3492-01 8 95686535 95686535 G A ESRP1 Splice_Site p.X485_splice 0.43 TCGA-AA-3492-01 8 97506408 97506408 T C SDC2 5'UTR 0.57 TCGA-AA-3492-01 8 98289462 98289462 G A TSPYL5 Missense_Mutation p.T204M 0.32 deleterious(0.02) probably_damaging(0.975) TCGA-AA-3492-01 8 99047954 99047954 C T MATN2 3'UTR 0.22 TCGA-AA-3492-01 8 99608337 99608337 C T STK3 Missense_Mutation p.D277N 0.08 tolerated(0.51) benign(0.002) TCGA-AA-3492-01 9 100223003 100223003 G A TDRD7 Missense_Mutation p.V467I 0.44 tolerated(0.11) benign(0.186) TCGA-AA-3492-01 9 100617495 100617495 G A FOXE1 3'UTR 0.33 TCGA-AA-3492-01 9 101052788 101052788 G A GABBR2 3'UTR 0.39 TCGA-AA-3492-01 9 101904860 101904860 A G TGFBR1 Missense_Mutation p.H283R 0.29 deleterious(0) probably_damaging(0.941) TCGA-AA-3492-01 9 102769968 102769968 A C ERP44 Missense_Mutation p.L256V 0.10 deleterious(0) probably_damaging(0.951) TCGA-AA-3492-01 9 104239080 104239080 G - TMEM246 Frame_Shift_Del p.R99Gfs*5 0.27 TCGA-AA-3492-01 9 105767539 105767539 A - CYLC2 Frame_Shift_Del p.G211Efs*22 0.27 TCGA-AA-3492-01 9 106862450 106862450 A - SMC2 Frame_Shift_Del p.K188Rfs*5 0.09 TCGA-AA-3492-01 9 106864418 106864418 A - SMC2 Frame_Shift_Del p.I274* 0.23 TCGA-AA-3492-01 9 109686820 109686820 C T ZNF462 Silent p.P209P 0.38 TCGA-AA-3492-01 9 111641781 111641781 C T IKBKAP Missense_Mutation p.V1173M 0.34 tolerated(0.81) benign(0.005) TCGA-AA-3492-01 9 114296071 114296071 A C ZNF483 Missense_Mutation p.K185T 0.09 tolerated(0.28) possibly_damaging(0.728) TCGA-AA-3492-01 9 114521579 114521579 G A C9orf84 Intron 0.44 TCGA-AA-3492-01 9 114695180 114695180 T - UGCG Frame_Shift_Del p.L365Cfs*9 0.28 TCGA-AA-3492-01 9 117848698 117848698 G A TNC Missense_Mutation p.R438W 0.54 deleterious(0) probably_damaging(0.929) TCGA-AA-3492-01 9 123914741 123914741 T - CNTRL Intron 0.30 TCGA-AA-3492-01 9 124979520 124979520 C T LHX6 Missense_Mutation p.S170N 0.42 tolerated(0.14) probably_damaging(0.999) TCGA-AA-3492-01 9 125777871 125777871 T C RABGAP1 Silent p.C533C 0.39 TCGA-AA-3492-01 9 126132844 126132844 G A CRB2 Silent p.V504V 0.36 TCGA-AA-3492-01 9 127216317 127216317 G A GPR144 Missense_Mutation p.R340H 0.56 tolerated(0.53) benign(0) TCGA-AA-3492-01 9 127454770 127454770 C A NR6A1 Intron 0.43 TCGA-AA-3492-01 9 128509819 128509819 T C PBX3 Silent p.P29P 0.45 TCGA-AA-3492-01 9 129870764 129870764 G A ANGPTL2 Nonsense_Mutation p.R83* 0.26 TCGA-AA-3492-01 9 130167256 130167256 G A SLC2A8 Missense_Mutation p.C379Y 0.47 tolerated(0.16) benign(0.149) TCGA-AA-3492-01 9 130485454 130485454 G A TTC16 Silent p.P238P 0.36 TCGA-AA-3492-01 9 130502618 130502618 G T SH2D3C Missense_Mutation p.L707M 0.17 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 9 130551484 130551484 C T CDK9 Silent p.L261L 0.45 TCGA-AA-3492-01 9 130692022 130692022 A G PIP5KL1 Missense_Mutation p.M58T 0.18 tolerated(0.06) benign(0.316) TCGA-AA-3492-01 9 130829063 130829063 C - NAIF1 Frame_Shift_Del p.P107Lfs*14 0.27 TCGA-AA-3492-01 9 130869596 130869596 G A SLC25A25 Missense_Mutation p.R462Q 0.37 tolerated(0.66) benign(0.015) TCGA-AA-3492-01 9 131482104 131482104 T C PKN3 Silent p.G755G 0.34 TCGA-AA-3492-01 9 131503844 131503844 G A ZER1 Silent p.N569N 0.57 TCGA-AA-3492-01 9 132566421 132566421 T C TOR1B Missense_Mutation p.L90P 0.24 deleterious(0) probably_damaging(0.98) TCGA-AA-3492-01 9 133760430 133760430 C T ABL1 Missense_Mutation p.P937L 0.45 deleterious_low_confidence(0.03) benign(0.002) TCGA-AA-3492-01 9 134021534 134021534 C A NUP214 Silent p.T596T 0.35 TCGA-AA-3492-01 9 134349061 134349061 G A PRRC2B Silent p.P758P 0.46 TCGA-AA-3492-01 9 134353236 134353236 C T PRRC2B Silent p.P1504P 0.36 TCGA-AA-3492-01 9 134467554 134467554 G A RAPGEF1 Silent p.C734C 0.44 TCGA-AA-3492-01 9 135042390 135042390 G T NTNG2 Missense_Mutation p.G58C 0.41 deleterious(0) probably_damaging(0.988) TCGA-AA-3492-01 9 135277373 135277373 T - TTF1 Frame_Shift_Del p.K279Rfs*144 0.30 TCGA-AA-3492-01 9 135601093 135601093 C T AK8 Silent p.L474L 0.45 TCGA-AA-3492-01 9 136029274 136029274 C T GBGT1 Missense_Mutation p.R245H 0.52 tolerated(0.15) benign(0.018) TCGA-AA-3492-01 9 136333072 136333072 T C CACFD1 Missense_Mutation p.L117P 0.30 tolerated(0.2) probably_damaging(0.964) TCGA-AA-3492-01 9 137300040 137300040 C T RXRA Missense_Mutation p.P109S 0.24 tolerated(0.07) possibly_damaging(0.859) TCGA-AA-3492-01 9 137642403 137642403 C A COL5A1 Missense_Mutation p.P504T 0.33 probably_damaging(0.999) TCGA-AA-3492-01 9 137706666 137706666 G A COL5A1 Silent p.E1310E 0.39 TCGA-AA-3492-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.35 TCGA-AA-3492-01 9 138714664 138714664 G A CAMSAP1 Missense_Mutation p.R615W 0.37 tolerated(0.18) benign(0.416) TCGA-AA-3492-01 9 139258606 139258606 C T CARD9 3'UTR 0.39 TCGA-AA-3492-01 9 139410038 139410038 G A NOTCH1 Silent p.C600C 0.43 TCGA-AA-3492-01 9 139890189 139890189 G A CLIC3 Silent p.S18S 0.09 TCGA-AA-3492-01 9 19347024 19347024 G A DENND4C Silent p.A1370A 0.18 TCGA-AA-3492-01 9 19528054 19528054 G A SLC24A2 Missense_Mutation p.A521V 0.39 deleterious(0) possibly_damaging(0.792) TCGA-AA-3492-01 9 20885183 20885183 G A FOCAD Missense_Mutation p.S860N 0.36 tolerated(0.26) benign(0.016) TCGA-AA-3492-01 9 21077271 21077271 T C IFNB1 3'UTR 0.41 TCGA-AA-3492-01 9 21334424 21334427 AAGA - KLHL9 Frame_Shift_Del p.F144Lfs*23 0.38 TCGA-AA-3492-01 9 2161816 2161816 C A SMARCA2 Missense_Mutation p.P1371H 0.60 possibly_damaging(0.893) TCGA-AA-3492-01 9 21968104 21968104 C T CDKN2A 3'UTR 0.42 TCGA-AA-3492-01 9 32457056 32457056 T G DDX58 3'UTR 0.34 TCGA-AA-3492-01 9 33001583 33001583 G C APTX 5'UTR 0.50 TCGA-AA-3492-01 9 33467448 33467448 G A NOL6 Missense_Mutation p.R557W 0.36 tolerated(0.07) benign(0.013) TCGA-AA-3492-01 9 33798447 33798447 A G PRSS3 Intron 0.30 TCGA-AA-3492-01 9 34517412 34517412 C T DNAI1 Missense_Mutation p.R650C 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 9 34521559 34521560 AG - ENHO Frame_Shift_Del p.S45* 0.32 TCGA-AA-3492-01 9 34659879 34659879 T C IL11RA Missense_Mutation p.W312R 0.32 tolerated(1) benign(0.03) TCGA-AA-3492-01 9 35090275 35090275 C A PIGO Missense_Mutation p.G953C 0.48 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 9 35295827 35295827 C T UNC13B Nonsense_Mutation p.R221* 0.08 TCGA-AA-3492-01 9 35750898 35750898 G T RGP1 Missense_Mutation p.K133N 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 9 36112444 36112444 T C RECK Silent p.C677C 0.48 TCGA-AA-3492-01 9 37442162 37442162 G - ZBTB5 Frame_Shift_Del p.S130Vfs*22 0.33 TCGA-AA-3492-01 9 37956019 37956019 A G SHB Missense_Mutation p.S363P 0.29 tolerated(0.11) possibly_damaging(0.854) TCGA-AA-3492-01 9 38615687 38615687 G A ANKRD18A Silent p.Y133Y 0.44 TCGA-AA-3492-01 9 39149966 39149966 C A CNTNAP3 Missense_Mutation p.D496Y 0.33 deleterious(0.03) possibly_damaging(0.702) TCGA-AA-3492-01 9 39177419 39177419 C T CNTNAP3 Missense_Mutation p.V275I 0.40 deleterious(0.05) benign(0.376) TCGA-AA-3492-01 9 5467941 5467941 A G CD274 3'UTR 0.40 TCGA-AA-3492-01 9 713155 713155 G A KANK1 Missense_Mutation p.V797M 0.47 deleterious(0.03) possibly_damaging(0.748) TCGA-AA-3492-01 9 72131751 72131751 C T APBA1 Missense_Mutation p.A126T 0.30 tolerated_low_confidence(0.21) benign(0.171) TCGA-AA-3492-01 9 73150903 73150903 G A TRPM3 Missense_Mutation p.S1697L 0.31 deleterious_low_confidence(0.01) benign(0.115) TCGA-AA-3492-01 9 73461501 73461501 G A TRPM3 Nonsense_Mutation p.R157* 0.22 TCGA-AA-3492-01 9 74300077 74300077 T - TMEM2 3'UTR 0.44 TCGA-AA-3492-01 9 79840849 79840849 A - VPS13A Frame_Shift_Del p.T392Pfs*7 0.23 TCGA-AA-3492-01 9 80855090 80855110 GGATTTAACTATTCTAGCAAA - CEP78 In_Frame_Del 0.21 TCGA-AA-3492-01 9 84562813 84562813 G A RP11-383M4.6 Intron 0.37 TCGA-AA-3492-01 9 86395297 86395297 C T GKAP1 Silent p.E195E 0.41 TCGA-AA-3492-01 9 86590634 86590634 A - HNRNPK Intron 0.45 TCGA-AA-3492-01 9 86617989 86617989 T C RMI1 3'UTR 0.40 TCGA-AA-3492-01 9 87338542 87338542 C T NTRK2 Missense_Mutation p.S213F 0.30 deleterious(0.02) probably_damaging(0.945) TCGA-AA-3492-01 9 88886931 88886931 T G ISCA1 Missense_Mutation p.I78L 0.38 tolerated(0.37) benign(0.001) TCGA-AA-3492-01 9 894146 894146 G - DMRT1 Frame_Shift_Del p.G259Afs*17 0.29 TCGA-AA-3492-01 9 90534151 90534151 G A SPATA31C1 Intron 0.05 TCGA-AA-3492-01 9 90535567 90535567 C T SPATA31C1 RNA 0.16 TCGA-AA-3492-01 9 91616924 91616924 G T S1PR3 Missense_Mutation p.R270M 0.10 tolerated(0.09) benign(0.065) TCGA-AA-3492-01 9 91617304 91617304 C T S1PR3 3'UTR 0.42 TCGA-AA-3492-01 9 91618458 91618458 T C S1PR3 3'UTR 0.38 TCGA-AA-3492-01 9 91978731 91978731 C T SECISBP2 3'Flank 0.63 TCGA-AA-3492-01 9 96060184 96060184 G A WNK2 Missense_Mutation p.E1957K 0.44 unknown(0) TCGA-AA-3492-01 9 96080443 96080443 A - WNK2 3'UTR 0.50 TCGA-AA-3492-01 9 99489304 99489304 G A RP11-535M15.2 RNA 0.29 TCGA-AA-3492-01 9 99521298 99521298 C T ZNF510 Missense_Mutation p.C605Y 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 X 100496720 100496720 C T DRP2 Missense_Mutation p.A208V 0.29 tolerated(1) benign(0.062) TCGA-AA-3492-01 X 100879896 100879896 G A ARMCX3 5'UTR 0.45 TCGA-AA-3492-01 X 101575940 101575940 G A NXF2 Missense_Mutation p.A345T 0.11 tolerated(0.05) benign(0.247) TCGA-AA-3492-01 X 101908902 101908902 G T GPRASP1 Nonsense_Mutation p.E21* 0.35 TCGA-AA-3492-01 X 102003967 102003967 A - BHLHB9 Frame_Shift_Del p.K17Rfs*21 0.08 TCGA-AA-3492-01 X 102005938 102005938 A T BHLHB9 3'UTR 0.34 TCGA-AA-3492-01 X 102755102 102755102 G T RAB40A Missense_Mutation p.L195I 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-AA-3492-01 X 102755697 102755697 G A RAB40A 5'UTR 0.32 TCGA-AA-3492-01 X 104961402 104961402 G A IL1RAPL2 Missense_Mutation p.S272N 0.49 tolerated(0.05) possibly_damaging(0.597) TCGA-AA-3492-01 X 106960076 106960076 G A TSC22D3 Intron 0.45 TCGA-AA-3492-01 X 108652263 108652263 A G GUCY2F Silent p.L642L 0.41 TCGA-AA-3492-01 X 108926791 108926791 G T ACSL4 5'UTR 0.38 TCGA-AA-3492-01 X 109693886 109693886 T C RGAG1 Missense_Mutation p.M14T 0.40 tolerated_low_confidence(0.1) benign(0.001) TCGA-AA-3492-01 X 109694878 109694878 G A RGAG1 Missense_Mutation p.A345T 0.17 tolerated(0.16) benign(0.084) TCGA-AA-3492-01 X 110971418 110971418 T C ALG13 Silent p.H751H 0.45 TCGA-AA-3492-01 X 110987993 110987993 A T ALG13 Silent p.P931P 0.27 TCGA-AA-3492-01 X 114424244 114424244 G T RBMXL3 Missense_Mutation p.M80I 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-AA-3492-01 X 114424797 114424797 G - RBMXL3 Frame_Shift_Del p.G265Afs*11 0.36 TCGA-AA-3492-01 X 11777758 11777758 A - MSL3 Intron 0.60 TCGA-AA-3492-01 X 118717177 118717177 C T UBE2A Missense_Mutation p.R140C 0.36 deleterious(0.02) probably_damaging(0.937) TCGA-AA-3492-01 X 118986773 118986773 T C UPF3B Missense_Mutation p.Q40R 0.45 tolerated(0.2) benign(0.275) TCGA-AA-3492-01 X 119077504 119077504 C T NKAP Missense_Mutation p.R22H 0.45 tolerated(0.09) probably_damaging(0.991) TCGA-AA-3492-01 X 119512555 119512555 G T ATP1B4 Missense_Mutation p.R280L 0.36 tolerated(0.27) probably_damaging(0.959) TCGA-AA-3492-01 X 119694160 119694160 A G CUL4B Missense_Mutation p.F130L 0.45 tolerated_low_confidence(1) benign(0) TCGA-AA-3492-01 X 120008790 120008790 G A CT47B1 Silent p.A245A 0.37 TCGA-AA-3492-01 X 120182866 120182866 T C GLUD2 Missense_Mutation p.L443P 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3492-01 X 122536908 122536908 A G GRIA3 Missense_Mutation p.T382A 0.34 deleterious(0.04) benign(0.049) TCGA-AA-3492-01 X 123787489 123787489 T C TENM1 Missense_Mutation p.K438R 0.41 tolerated(0.33) benign(0.008) TCGA-AA-3492-01 X 124097629 124097630 - A TENM1 5'UTR 0.32 TCGA-AA-3492-01 X 127185754 127185754 C A ACTRT1 Silent p.A144A 0.13 TCGA-AA-3492-01 X 128896705 128896705 C T XPNPEP2 Missense_Mutation p.R567C 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 X 128962994 128962994 C T ZDHHC9 Silent p.A97A 0.43 TCGA-AA-3492-01 X 12938607 12938607 G A TLR8 Missense_Mutation p.G483E 0.34 deleterious(0) probably_damaging(0.978) TCGA-AA-3492-01 X 129507006 129507006 T C SLC25A14 3'UTR 0.23 TCGA-AA-3492-01 X 129629077 129629077 G A RP1-274L7.1 Intron 0.48 TCGA-AA-3492-01 X 130411008 130411008 G A IGSF1 Missense_Mutation p.S843L 0.49 deleterious(0.04) probably_damaging(0.991) TCGA-AA-3492-01 X 130678462 130678462 C A OR13H1 Missense_Mutation p.P139T 0.12 tolerated(0.14) benign(0.045) TCGA-AA-3492-01 X 132091052 132091052 C T HS6ST2 Missense_Mutation p.R244H 0.41 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 X 135326876 135326876 C A MAP7D3 Missense_Mutation p.R111I 0.42 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 X 138678858 138678858 A G MCF2 Silent p.G785G 0.47 TCGA-AA-3492-01 X 142967933 142967933 C A UBE2NL 3'UTR 0.41 TCGA-AA-3492-01 X 142968332 142968332 T C UBE2NL 3'UTR 0.45 TCGA-AA-3492-01 X 144905618 144905618 G A SLITRK2 Missense_Mutation p.E559K 0.35 tolerated(0.93) benign(0.017) TCGA-AA-3492-01 X 147743554 147743554 G A AFF2 Silent p.V102V 0.47 TCGA-AA-3492-01 X 148690345 148690345 A G TMEM185A Missense_Mutation p.V131A 0.37 deleterious(0) possibly_damaging(0.492) TCGA-AA-3492-01 X 148794854 148794854 G T MAGEA11 Missense_Mutation p.C12F 0.23 tolerated_low_confidence(0.87) benign(0) TCGA-AA-3492-01 X 148798260 148798260 C T MAGEA11 Missense_Mutation p.R372W 0.38 tolerated(0.08) benign(0.38) TCGA-AA-3492-01 X 14891613 14891613 C T MOSPD2 5'UTR 0.27 TCGA-AA-3492-01 X 149901048 149901048 C T MTMR1 Missense_Mutation p.T301M 0.44 deleterious(0) probably_damaging(0.981) TCGA-AA-3492-01 X 150869278 150869278 G A PRRG3 Missense_Mutation p.V157M 0.46 tolerated(0.24) benign(0.099) TCGA-AA-3492-01 X 150911726 150911726 C T CNGA2 Silent p.L251L 0.40 TCGA-AA-3492-01 X 152034380 152034380 C T NSDHL Silent p.N187N 0.38 TCGA-AA-3492-01 X 152772381 152772381 G T BGN Missense_Mutation p.R257M 0.15 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 X 153009114 153009114 C T ABCD1 Silent p.G721G 0.33 TCGA-AA-3492-01 X 153035391 153035391 C T PLXNB3 Silent p.G565G 0.33 TCGA-AA-3492-01 X 153069233 153069233 G A PDZD4 Missense_Mutation p.R629C 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3492-01 X 15349629 15349629 C T PIGA Missense_Mutation p.A142T 0.28 deleterious(0) possibly_damaging(0.647) TCGA-AA-3492-01 X 153580289 153580289 G A FLNA Silent p.D2290D 0.33 TCGA-AA-3492-01 X 15376161 15376161 G A FIGF Silent p.I152I 0.47 TCGA-AA-3492-01 X 154113426 154113426 G T H2AFB1 Missense_Mutation p.Q34H 0.24 tolerated(0.32) benign(0.433) TCGA-AA-3492-01 X 154159807 154159807 T C F8 Missense_Mutation p.N753S 0.36 tolerated(0.16) benign(0.006) TCGA-AA-3492-01 X 15706829 15706829 G A CA5BP1 RNA 0.29 TCGA-AA-3492-01 X 15720970 15720970 C - CA5BP1 RNA 0.31 TCGA-AA-3492-01 X 1584362 1584362 C - P2RY8 3'UTR 0.50 TCGA-AA-3492-01 X 1584668 1584668 C T P2RY8 Missense_Mutation p.V262M 0.12 deleterious(0) probably_damaging(0.94) TCGA-AA-3492-01 X 18671646 18671646 G A CDKL5 Silent p.A1025A 0.50 TCGA-AA-3492-01 X 18970648 18970648 C T PHKA2 Silent p.K83K 0.42 TCGA-AA-3492-01 X 19032036 19032036 G A GPR64 Silent p.T289T 0.42 TCGA-AA-3492-01 X 19372683 19372683 C T PDHA1 Silent p.G233G 0.49 TCGA-AA-3492-01 X 19587274 19587274 C A SH3KBP1 Missense_Mutation p.S444I 0.47 tolerated(0.07) benign(0.063) TCGA-AA-3492-01 X 20185714 20185714 G A RPS6KA3 Missense_Mutation p.A532V 0.42 tolerated(0.1) benign(0.003) TCGA-AA-3492-01 X 22112110 22112110 G A PHEX Missense_Mutation p.A248T 0.40 deleterious(0.01) benign(0.106) TCGA-AA-3492-01 X 23411859 23411859 A G PTCHD1 Missense_Mutation p.M742V 0.30 deleterious(0) probably_damaging(0.949) TCGA-AA-3492-01 X 23704440 23704440 T A PRDX4 Missense_Mutation p.D268E 0.32 tolerated(1) benign(0) TCGA-AA-3492-01 X 24227043 24227043 C T ZFX Missense_Mutation p.R374W 0.24 tolerated(0.09) possibly_damaging(0.88) TCGA-AA-3492-01 X 2825369 2825369 C - ARSD Frame_Shift_Del p.C576Afs*31 0.30 TCGA-AA-3492-01 X 30849364 30849364 A - TAB3 3'UTR 0.38 TCGA-AA-3492-01 X 31986509 31986509 G A DMD Silent p.S2187S 0.06 TCGA-AA-3492-01 X 34149613 34149613 T C FAM47A Silent p.L261L 0.48 TCGA-AA-3492-01 X 34961003 34961003 C T FAM47B Missense_Mutation p.P19S 0.41 tolerated(0.08) benign(0.028) TCGA-AA-3492-01 X 34962283 34962284 CA - FAM47B Frame_Shift_Del p.T446Nfs*6 0.33 TCGA-AA-3492-01 X 3530256 3530256 G A PRKX Silent p.I354I 0.13 TCGA-AA-3492-01 X 36385102 36385102 A T CXorf30 Silent p.I461I 0.24 TCGA-AA-3492-01 X 37028256 37028256 G A FAM47C Silent p.V591V 0.22 TCGA-AA-3492-01 X 38031269 38031269 A G SRPX Missense_Mutation p.F131L 0.41 tolerated(0.13) probably_damaging(0.996) TCGA-AA-3492-01 X 38664512 38664512 G A MID1IP1 Missense_Mutation p.V105I 0.38 tolerated(0.07) possibly_damaging(0.465) TCGA-AA-3492-01 X 40448333 40448333 G A ATP6AP2 Missense_Mutation p.V45M 0.32 deleterious(0.02) benign(0.032) TCGA-AA-3492-01 X 41055599 41055599 T C USP9X Missense_Mutation p.F1358S 0.37 deleterious(0.03) probably_damaging(0.958) TCGA-AA-3492-01 X 41201825 41201825 G A DDX3X Missense_Mutation p.R121H 0.51 tolerated(0.08) benign(0.335) TCGA-AA-3492-01 X 41485943 41485943 G A CASK Missense_Mutation p.A310V 0.55 tolerated(0.08) benign(0.028) TCGA-AA-3492-01 X 41588025 41588025 A - GPR82 3'UTR 0.31 TCGA-AA-3492-01 X 43817826 43817826 T C NDP Silent p.T22T 0.42 TCGA-AA-3492-01 X 43817942 43817942 A - NDP 5'UTR 0.27 TCGA-AA-3492-01 X 44101461 44101461 C T EFHC2 Missense_Mutation p.G396S 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3492-01 X 47103933 47103933 C T USP11 Silent p.D652D 0.47 TCGA-AA-3492-01 X 47426711 47426711 G A ARAF Missense_Mutation p.G319D 0.45 deleterious(0) probably_damaging(0.993) TCGA-AA-3492-01 X 48340877 48340877 C T FTSJ1 Missense_Mutation p.R248C 0.49 tolerated(0.11) benign(0.005) TCGA-AA-3492-01 X 48457201 48457201 C - WDR13 Frame_Shift_Del p.P48Qfs*8 0.26 TCGA-AA-3492-01 X 48652397 48652397 C - GATA1 Frame_Shift_Del p.P358Qfs*74 0.32 TCGA-AA-3492-01 X 48678598 48678598 G T HDAC6 Missense_Mutation p.G758V 0.29 tolerated(0.13) probably_damaging(0.982) TCGA-AA-3492-01 X 48933276 48933276 C T WDR45 Missense_Mutation p.R219H 0.38 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 X 49646257 49646257 G T USP27X 3'UTR 0.31 TCGA-AA-3492-01 X 50146544 50146544 C T DGKK RNA 0.36 TCGA-AA-3492-01 X 50213353 50213353 G A DGKK RNA 0.34 TCGA-AA-3492-01 X 51076100 51076100 G A NUDT10 Missense_Mutation p.V95M 0.08 deleterious(0) probably_damaging(0.997) TCGA-AA-3492-01 X 53461277 53461277 G A HSD17B10 Missense_Mutation p.R6W 0.34 deleterious(0) probably_damaging(0.969) TCGA-AA-3492-01 X 53672374 53672374 C T HUWE1 Silent p.V131V 0.32 TCGA-AA-3492-01 X 54482724 54482724 G A FGD1 Missense_Mutation p.L591F 0.36 tolerated(0.11) probably_damaging(0.951) TCGA-AA-3492-01 X 55515257 55515257 T G USP51 Missense_Mutation p.E39A 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3492-01 X 57619452 57619452 A G ZXDB Missense_Mutation p.H324R 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3492-01 X 5811021 5811021 G A NLGN4X Missense_Mutation p.T763M 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-3492-01 X 595377 595377 G A SHOX Missense_Mutation p.R101H 0.35 deleterious(0.01) benign(0.022) TCGA-AA-3492-01 X 63411534 63411534 A G AMER1 Missense_Mutation p.F545L 0.40 tolerated(0.66) benign(0.006) TCGA-AA-3492-01 X 64139945 64139945 G A ZC4H2 Intron 0.53 TCGA-AA-3492-01 X 65242518 65242518 C G VSIG4 Intron 0.64 TCGA-AA-3492-01 X 65253401 65253401 G T VSIG4 Missense_Mutation p.S109R 0.13 deleterious(0.04) probably_damaging(0.974) TCGA-AA-3492-01 X 66765324 66765324 G T AR Missense_Mutation p.E112D 0.36 deleterious_low_confidence(0.05) benign(0.108) TCGA-AA-3492-01 X 68382054 68382054 C T PJA1 Missense_Mutation p.R343H 0.46 tolerated(0.15) benign(0.025) TCGA-AA-3492-01 X 69672333 69672333 A G DLG3 Intron 0.29 TCGA-AA-3492-01 X 70316683 70316683 G A FOXO4 Missense_Mutation p.G102E 0.42 deleterious(0) probably_damaging(0.994) TCGA-AA-3492-01 X 70327614 70327614 G - IL2RG Frame_Shift_Del p.P361Hfs*5 0.26 TCGA-AA-3492-01 X 70836857 70836857 A G CXCR3 Silent p.H202H 0.40 TCGA-AA-3492-01 X 71349803 71349803 G - RGAG4 Frame_Shift_Del p.Q530Nfs*2 0.28 TCGA-AA-3492-01 X 71350091 71350091 G A RGAG4 Missense_Mutation p.P434S 0.20 tolerated_low_confidence(0.12) unknown(0) TCGA-AA-3492-01 X 72224228 72224228 T C PABPC1L2B 3'UTR 0.18 TCGA-AA-3492-01 X 73524792 73524792 A G ZCCHC13 3'UTR 0.33 TCGA-AA-3492-01 X 74523377 74523377 A G UPRT 3'UTR 0.35 TCGA-AA-3492-01 X 75648676 75648676 C A MAGEE1 Missense_Mutation p.P118H 0.52 deleterious_low_confidence(0) possibly_damaging(0.615) TCGA-AA-3492-01 X 76709673 76709673 T C FGF16 Silent p.A9A 0.43 TCGA-AA-3492-01 X 76909632 76909632 T C ATRX Missense_Mutation p.R1425G 0.42 probably_damaging(0.997) TCGA-AA-3492-01 X 77914028 77914028 T - ZCCHC5 5'UTR 0.34 TCGA-AA-3492-01 X 79945281 79945281 T C BRWD3 Missense_Mutation p.T1265A 0.33 tolerated(0.32) benign(0.003) TCGA-AA-3492-01 X 82764709 82764709 T - POU3F4 3'UTR 0.23 TCGA-AA-3492-01 X 84362649 84362649 C T SATL1 Nonsense_Mutation p.W442* 0.39 TCGA-AA-3492-01 X 84523307 84523309 AAG - ZNF711 In_Frame_Del p.R310del 0.26 TCGA-AA-3492-01 X 91090523 91090523 C T PCDH11X Missense_Mutation p.T7M 0.18 tolerated(0.19) possibly_damaging(0.818) TCGA-AA-3492-01 X 91134243 91134243 G A PCDH11X Missense_Mutation p.E1002K 0.35 tolerated(1) benign(0) TCGA-AA-3496-01 10 118314737 118314737 C T PNLIP Nonsense_Mutation p.R207* 0.35 TCGA-AA-3496-01 10 124152823 124152823 A G PLEKHA1 Missense_Mutation p.E36G 0.37 tolerated(0.45) benign(0.078) TCGA-AA-3496-01 10 127530508 127530508 G C DHX32 Intron 0.35 TCGA-AA-3496-01 10 135094799 135094799 C T TUBGCP2 Missense_Mutation p.G879S 0.40 tolerated(0.8) benign(0.006) TCGA-AA-3496-01 10 96827126 96827127 - G CYP2C8 Intron 0.52 TCGA-AA-3496-01 11 120837986 120837986 G A GRIK4 Nonsense_Mutation p.W783* 0.19 TCGA-AA-3496-01 11 122928518 122928529 GGCATTCCTCCT - HSPA8 In_Frame_Del p.M621_G624del 0.33 TCGA-AA-3496-01 11 1274195 1274195 C T MUC5B Missense_Mutation p.H5068Y 0.12 unknown(0) TCGA-AA-3496-01 11 18231675 18231675 C A RP11-113D6.10 Missense_Mutation p.P154Q 0.44 deleterious_low_confidence(0) unknown(0) TCGA-AA-3496-01 11 22364824 22364825 - G SLC17A6 Frame_Shift_Ins p.M126Dfs*66 0.56 TCGA-AA-3496-01 11 30033740 30033740 G A KCNA4 Silent p.G162G 0.50 TCGA-AA-3496-01 11 57003372 57003372 G A APLNR Silent p.S369S 0.11 TCGA-AA-3496-01 11 57175336 57175336 T C SLC43A3 Missense_Mutation p.T469A 0.17 tolerated(0.88) benign(0.085) TCGA-AA-3496-01 11 61077781 61077781 T C DDB1 Missense_Mutation p.Q796R 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3496-01 11 6652439 6652439 G A DCHS1 Missense_Mutation p.P1259S 0.15 tolerated(0.38) benign(0.005) TCGA-AA-3496-01 11 6898196 6898197 - T OR10A4 Frame_Shift_Ins p.G109Wfs*4 0.22 TCGA-AA-3496-01 11 8662497 8662497 A G TRIM66 Silent p.P328P 0.19 TCGA-AA-3496-01 11 93431911 93431911 A C KIAA1731 Missense_Mutation p.Q1278P 0.26 tolerated(0.11) benign(0.026) TCGA-AA-3496-01 11 9864205 9864205 G A SBF2 Missense_Mutation p.R1075C 0.36 tolerated(0.05) possibly_damaging(0.731) TCGA-AA-3496-01 12 110032874 110032874 C T MVK Silent p.G309G 0.33 TCGA-AA-3496-01 12 111801160 111801160 C T FAM109A Silent p.L37L 0.21 TCGA-AA-3496-01 12 11421596 11421596 C A PRB3 Missense_Mutation p.S24I 0.28 tolerated_low_confidence(0.05) unknown(0) TCGA-AA-3496-01 12 19511295 19511295 A T PLEKHA5 Missense_Mutation p.N1091I 0.33 tolerated(0.07) benign(0.09) TCGA-AA-3496-01 12 248437 248437 C A IQSEC3 Missense_Mutation p.N636K 0.33 deleterious(0.01) probably_damaging(0.932) TCGA-AA-3496-01 12 57589551 57589551 T C LRP1 Missense_Mutation p.S2850P 0.12 benign(0.034) TCGA-AA-3496-01 12 66814537 66814537 C T GRIP1 Missense_Mutation p.V549I 0.23 tolerated(1) benign(0.002) TCGA-AA-3496-01 13 21961667 21961667 C A ZDHHC20 Missense_Mutation p.W278C 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3496-01 13 35745583 35745583 A C NBEA Silent p.R1473R 0.27 TCGA-AA-3496-01 13 36006453 36006453 G A NBEA Missense_Mutation p.R2076H 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3496-01 14 76966313 76966313 C A ESRRB Missense_Mutation p.N468K 0.22 tolerated_low_confidence(0.56) benign(0) TCGA-AA-3496-01 14 89172729 89172729 T C EML5 Missense_Mutation p.T567A 0.10 deleterious(0.02) probably_damaging(0.969) TCGA-AA-3496-01 15 35529764 35529764 G A ANP32AP1 RNA 0.37 TCGA-AA-3496-01 15 77907981 77907981 C T LINGO1 Missense_Mutation p.E90K 0.42 deleterious(0.03) probably_damaging(0.91) TCGA-AA-3496-01 15 91824980 91824980 C T SV2B Missense_Mutation p.H466Y 0.40 tolerated(0.12) benign(0.002) TCGA-AA-3496-01 15 99512766 99512766 C T PGPEP1L Missense_Mutation p.V87M 0.38 tolerated(0.05) possibly_damaging(0.843) TCGA-AA-3496-01 16 21216840 21216840 G T ZP2 Silent p.T198T 0.10 TCGA-AA-3496-01 16 2376024 2376024 C T ABCA3 Silent p.V102V 0.30 TCGA-AA-3496-01 16 28847481 28847481 A G ATXN2L Silent p.G1041G 0.10 TCGA-AA-3496-01 16 31439628 31439628 G A COX6A2 Missense_Mutation p.P7S 0.08 tolerated(0.84) benign(0) TCGA-AA-3496-01 16 49670844 49670844 G A ZNF423 Missense_Mutation p.A740V 0.25 deleterious(0) probably_damaging(0.995) TCGA-AA-3496-01 16 836869 836869 C T RPUSD1 Missense_Mutation p.A157T 0.26 tolerated(0.25) benign(0.129) TCGA-AA-3496-01 17 11642281 11642281 G A DNAH9 Missense_Mutation p.G1967S 0.37 possibly_damaging(0.906) TCGA-AA-3496-01 17 20769979 20769979 G A CCDC144NL Silent p.V151V 0.33 TCGA-AA-3496-01 17 26694479 26694479 G A CTB-96E2.2 Missense_Mutation p.R108C 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-3496-01 17 36715907 36715907 G A SRCIN1 Missense_Mutation p.R647W 0.53 deleterious(0.01) possibly_damaging(0.839) TCGA-AA-3496-01 17 40328184 40328184 G A KCNH4 Silent p.Y239Y 0.22 TCGA-AA-3496-01 17 41007484 41007484 G A AOC3 Missense_Mutation p.R637Q 0.56 deleterious(0.03) probably_damaging(0.974) TCGA-AA-3496-01 17 41909318 41909318 G T MPP3 Intron 0.31 TCGA-AA-3496-01 17 4448966 4448966 C T MYBBP1A Missense_Mutation p.R671Q 0.50 deleterious(0.03) probably_damaging(0.989) TCGA-AA-3496-01 17 4539159 4539159 G T ALOX15 Missense_Mutation p.F352L 0.59 deleterious(0.02) benign(0.31) TCGA-AA-3496-01 17 48917072 48917073 - CC WFIKKN2 Frame_Shift_Ins p.S143Pfs*32 0.52 TCGA-AA-3496-01 17 49082598 49082599 - T SPAG9 Frame_Shift_Ins p.R484Kfs*7 0.26 TCGA-AA-3496-01 17 56772460 56772460 C - RAD51C Frame_Shift_Del p.S105* 0.46 TCGA-AA-3496-01 17 59861748 59861749 - T BRIP1 Frame_Shift_Ins p.I504Nfs*7 0.43 TCGA-AA-3496-01 18 44172476 44172476 T C LOXHD1 Silent p.G501G 0.48 TCGA-AA-3496-01 18 48584513 48584514 - G SMAD4 Frame_Shift_Ins p.S232Qfs*3 0.61 TCGA-AA-3496-01 19 12256085 12256085 C T ZNF625 3'UTR 0.32 TCGA-AA-3496-01 19 14266221 14266221 C T LPHN1 Missense_Mutation p.A1087T 0.34 tolerated(0.76) benign(0.28) TCGA-AA-3496-01 19 17752342 17752342 G A UNC13A Silent p.D832D 0.15 TCGA-AA-3496-01 19 20044862 20044862 G T ZNF93 Missense_Mutation p.K366N 0.23 deleterious(0) benign(0.12) TCGA-AA-3496-01 19 2933566 2933566 T C ZNF77 Missense_Mutation p.Y520C 0.08 deleterious(0) probably_damaging(0.947) TCGA-AA-3496-01 19 38384944 38384944 A G WDR87 Missense_Mutation p.F428L 0.10 probably_damaging(0.996) TCGA-AA-3496-01 19 40174254 40174254 G A AC093063.3 5'Flank 0.35 TCGA-AA-3496-01 19 40902275 40902275 C T PRX Missense_Mutation p.V662I 0.40 tolerated(0.1) benign(0) TCGA-AA-3496-01 19 44803825 44803825 C T ZNF235 Missense_Mutation p.D26N 0.24 deleterious(0.05) benign(0.337) TCGA-AA-3496-01 19 52329052 52329052 T C FPR3 3'UTR 0.33 TCGA-AA-3496-01 19 55258836 55258836 C T KIR2DL3 Silent p.T238T 0.42 TCGA-AA-3496-01 19 55597787 55597787 C T EPS8L1 Missense_Mutation p.P560S 0.35 tolerated(0.17) benign(0.015) TCGA-AA-3496-01 19 55669034 55669034 G A TNNI3 5'UTR 0.56 TCGA-AA-3496-01 19 7705647 7705647 G T STXBP2 Missense_Mutation p.G93W 0.12 deleterious(0.01) probably_damaging(0.909) TCGA-AA-3496-01 19 9028248 9028248 C A MUC16 Missense_Mutation p.D12182Y 0.09 possibly_damaging(0.818) TCGA-AA-3496-01 1 152281199 152281199 C G FLG Missense_Mutation p.D2055H 0.11 possibly_damaging(0.861) TCGA-AA-3496-01 1 152281561 152281561 C A FLG Missense_Mutation p.W1934L 0.21 benign(0.307) TCGA-AA-3496-01 1 152283305 152283305 G C FLG Missense_Mutation p.P1353A 0.32 possibly_damaging(0.822) TCGA-AA-3496-01 1 158224911 158224911 C A CD1A Silent p.I32I 0.19 TCGA-AA-3496-01 1 16057720 16057720 C T PLEKHM2 Silent p.T811T 0.46 TCGA-AA-3496-01 1 160607006 160607006 G A SLAMF1 Silent p.R130R 0.59 TCGA-AA-3496-01 1 169529961 169529961 G A F5 Silent p.D139D 0.26 TCGA-AA-3496-01 1 17332020 17332020 C A ATP13A2 Missense_Mutation p.R46M 0.10 deleterious(0) probably_damaging(0.988) TCGA-AA-3496-01 1 175299211 175299211 C T TNR Silent p.A1264A 0.40 TCGA-AA-3496-01 1 178834296 178834296 G A ANGPTL1 Nonsense_Mutation p.R206* 0.26 TCGA-AA-3496-01 1 19570177 19570177 C T EMC1 Missense_Mutation p.G104D 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3496-01 1 204985627 204985627 A G NFASC Missense_Mutation p.E1228G 0.11 tolerated(0.08) unknown(0) TCGA-AA-3496-01 1 205312364 205312364 C T KLHDC8A Silent p.T123T 0.42 TCGA-AA-3496-01 1 209800245 209800245 G A LAMB3 Missense_Mutation p.R522W 0.38 deleterious(0.01) probably_damaging(0.967) TCGA-AA-3496-01 1 228404719 228404719 G T OBSCN Missense_Mutation p.A795S 0.21 benign(0.155) TCGA-AA-3496-01 1 236189325 236189325 C T NID1 Missense_Mutation p.V619I 0.25 tolerated(0.51) benign(0.015) TCGA-AA-3496-01 1 31838654 31838654 A G FABP3 3'UTR 0.35 TCGA-AA-3496-01 1 44133600 44133600 A G KDM4A Missense_Mutation p.E358G 0.09 tolerated(0.09) benign(0) TCGA-AA-3496-01 1 44804911 44804911 T C ERI3 Missense_Mutation p.R99G 0.09 deleterious_low_confidence(0) possibly_damaging(0.558) TCGA-AA-3496-01 1 45811603 45811603 G T TESK2 Missense_Mutation p.R315S 0.10 tolerated(0.13) benign(0.106) TCGA-AA-3496-01 1 6310656 6310656 C T GPR153 Silent p.P336P 0.35 TCGA-AA-3496-01 1 75055696 75055696 C A C1orf173 Missense_Mutation p.A599S 0.42 tolerated(0.34) benign(0.061) TCGA-AA-3496-01 1 86964315 86964318 AAGT - CLCA1 Frame_Shift_Del p.Q725Rfs*34 0.52 TCGA-AA-3496-01 20 18396061 18396061 C T DZANK1 Silent p.P329P 0.21 TCGA-AA-3496-01 20 31023604 31023604 A G ASXL1 Missense_Mutation p.D1030G 0.10 tolerated(0.69) benign(0.002) TCGA-AA-3496-01 20 61443766 61443766 C T OGFR Missense_Mutation p.R267C 0.28 deleterious(0) probably_damaging(0.995) TCGA-AA-3496-01 21 45953667 45953667 C T TSPEAR Missense_Mutation p.R148H 0.40 tolerated(0.06) benign(0.017) TCGA-AA-3496-01 21 47557171 47557171 G A FTCD Silent p.D507D 0.33 TCGA-AA-3496-01 22 21385432 21385432 C T SLC7A4 Missense_Mutation p.A224T 0.38 tolerated(0.54) benign(0.037) TCGA-AA-3496-01 22 24472219 24472219 C T CABIN1 Silent p.L912L 0.40 TCGA-AA-3496-01 22 24487540 24487540 G C CABIN1 Missense_Mutation p.E1177Q 0.48 deleterious(0.05) possibly_damaging(0.651) TCGA-AA-3496-01 22 37771069 37771069 G T ELFN2 Missense_Mutation p.A169D 0.29 tolerated(0.09) benign(0.315) TCGA-AA-3496-01 22 38333161 38333161 C T MICALL1 Missense_Mutation p.R795C 0.46 deleterious(0) probably_damaging(1) TCGA-AA-3496-01 22 43926830 43926830 C A EFCAB6 Silent p.A1416A 0.14 TCGA-AA-3496-01 2 100623274 100623274 C T AFF3 Silent p.P256P 0.85 TCGA-AA-3496-01 2 128389195 128389195 G A MYO7B Missense_Mutation p.D1680N 0.74 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3496-01 2 152384017 152384017 T G NEB Missense_Mutation p.K7273T 0.24 probably_damaging(1) TCGA-AA-3496-01 2 175962215 175962215 G A ATF2 Missense_Mutation p.P312L 0.76 tolerated(0.17) benign(0.321) TCGA-AA-3496-01 2 176987683 176987683 T C HOXD9 Missense_Mutation p.F63L 0.11 tolerated(0.06) probably_damaging(0.989) TCGA-AA-3496-01 2 179421724 179421724 C T TTN Missense_Mutation p.S29386N 0.72 TCGA-AA-3496-01 2 201355034 201355034 G A KCTD18 Missense_Mutation p.T357M 0.24 tolerated_low_confidence(0.15) benign(0.003) TCGA-AA-3496-01 2 207174437 207174437 C T ZDBF2 Missense_Mutation p.R1729C 0.74 tolerated(0.18) benign(0.05) TCGA-AA-3496-01 2 96781510 96781510 G A ADRA2B Missense_Mutation p.R127C 0.61 deleterious(0) possibly_damaging(0.766) TCGA-AA-3496-01 3 11059096 11059096 G A SLC6A1 Missense_Mutation p.V67I 0.42 tolerated(0.05) probably_damaging(0.982) TCGA-AA-3496-01 3 119120754 119120754 C T ARHGAP31 Silent p.T385T 0.31 TCGA-AA-3496-01 3 119120905 119120905 C T ARHGAP31 Missense_Mutation p.R436W 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3496-01 3 121100145 121100145 C T STXBP5L Nonsense_Mutation p.R809* 0.48 TCGA-AA-3496-01 3 130116894 130116894 C T COL6A5 Silent p.D1310D 0.30 TCGA-AA-3496-01 3 138763088 138763088 G A PRR23C Silent p.D125D 0.37 TCGA-AA-3496-01 3 142226904 142226904 C T ATR Missense_Mutation p.D1634N 0.31 tolerated(0.17) benign(0.02) TCGA-AA-3496-01 3 38639271 38639271 C T SCN5A Silent p.E737E 0.35 TCGA-AA-3496-01 3 4712501 4712501 C T ITPR1 Silent p.L684L 0.46 TCGA-AA-3496-01 3 9594238 9594238 G A LHFPL4 Silent p.I42I 0.28 TCGA-AA-3496-01 3 97680436 97680436 G A MINA Silent p.V183V 0.21 TCGA-AA-3496-01 4 114280009 114280009 A G ANK2 Missense_Mutation p.E3412G 0.62 possibly_damaging(0.69) TCGA-AA-3496-01 4 146824226 146824226 T C ZNF827 Missense_Mutation p.E62G 0.10 deleterious(0.01) benign(0.294) TCGA-AA-3496-01 4 174254699 174254699 A G HMGB2 Silent p.S34S 0.14 TCGA-AA-3496-01 4 186366549 186366549 C T CCDC110 3'UTR 0.77 TCGA-AA-3496-01 5 100238655 100238655 C T ST8SIA4 Missense_Mutation p.R2H 0.48 probably_damaging(0.964) TCGA-AA-3496-01 5 102423641 102423641 C T GIN1 Silent p.L510L 0.09 TCGA-AA-3496-01 5 112174658 112174658 C T APC Nonsense_Mutation p.Q1123* 0.39 TCGA-AA-3496-01 5 112174662 112174662 A T APC Missense_Mutation p.N1124I 0.43 benign(0.323) TCGA-AA-3496-01 5 112439976 112439976 C T MCC Silent p.K368K 0.71 TCGA-AA-3496-01 5 133873753 133873753 A G JADE2 Missense_Mutation p.N45D 0.10 tolerated(0.22) benign(0.077) TCGA-AA-3496-01 5 140216232 140216232 G A PCDHA7 Missense_Mutation p.R755Q 0.41 tolerated_low_confidence(0.12) benign(0.01) TCGA-AA-3496-01 5 140433361 140433361 G A PCDHB1 Missense_Mutation p.R769H 0.32 deleterious(0.01) benign(0.272) TCGA-AA-3496-01 5 140772513 140772513 G A PCDHGA8 Missense_Mutation p.V45M 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3496-01 5 149245742 149245742 G A PDE6A Silent p.F783F 0.42 TCGA-AA-3496-01 5 3599827 3599827 C T IRX1 Silent p.P255P 0.44 TCGA-AA-3496-01 5 41870388 41870388 A G OXCT1 Missense_Mutation p.Y25H 0.08 tolerated(0.54) benign(0) TCGA-AA-3496-01 5 60369008 60369009 TA - NDUFAF2 Frame_Shift_Del p.Y62* 0.29 TCGA-AA-3496-01 6 117639415 117639415 T A ROS1 Missense_Mutation p.T1981S 0.30 deleterious(0) probably_damaging(0.981) TCGA-AA-3496-01 6 118832526 118832526 G A CEP85L Missense_Mutation p.R401W 0.37 deleterious(0) benign(0.429) TCGA-AA-3496-01 6 152711423 152711423 G A SYNE1 Silent p.H2723H 0.44 TCGA-AA-3496-01 6 24480149 24480149 G A GPLD1 Silent p.I64I 0.22 TCGA-AA-3496-01 6 26204905 26204905 G T HIST1H4E Silent p.L11L 0.09 TCGA-AA-3496-01 6 31656049 31656049 G T ABHD16A Silent p.T428T 0.12 TCGA-AA-3496-01 6 31905206 31905206 A G CFB Missense_Mutation p.I214V 0.08 tolerated(0.26) benign(0.046) TCGA-AA-3496-01 6 43304894 43304894 T C ZNF318 3'UTR 0.11 TCGA-AA-3496-01 6 74161301 74161301 C T MB21D1 Missense_Mutation p.A202T 0.33 tolerated(0.1) benign(0.025) TCGA-AA-3496-01 6 76023553 76023553 C A FILIP1 Missense_Mutation p.Q665H 0.32 deleterious(0) benign(0.332) TCGA-AA-3496-01 6 90039357 90039357 A G UBE2J1 3'UTR 0.24 TCGA-AA-3496-01 6 96654339 96654340 - A FUT9 3'UTR 0.27 TCGA-AA-3496-01 7 105641974 105641974 G A CDHR3 Silent p.A260A 0.52 TCGA-AA-3496-01 7 127976010 127976010 C T RBM28 Missense_Mutation p.D234N 0.24 tolerated(0.18) benign(0.109) TCGA-AA-3496-01 7 133948807 133948807 C A LRGUK 3'UTR 0.42 TCGA-AA-3496-01 7 149418045 149418045 G A KRBA1 Missense_Mutation p.G92R 0.38 tolerated(0.1) benign(0.338) TCGA-AA-3496-01 7 150912144 150912144 C A ABCF2 Missense_Mutation p.D519Y 0.55 deleterious(0) probably_damaging(1) TCGA-AA-3496-01 7 151864331 151864331 C T KMT2C Missense_Mutation p.R3217H 0.50 probably_damaging(0.999) TCGA-AA-3496-01 7 151896508 151896508 T A KMT2C Nonsense_Mutation p.R1377* 0.49 TCGA-AA-3496-01 7 82508736 82508736 G A PCLO Missense_Mutation p.P4524L 0.45 unknown(0) TCGA-AA-3496-01 7 99621092 99621092 C T ZKSCAN1 5'UTR 0.36 TCGA-AA-3496-01 7 99662519 99662519 A G ZSCAN21 3'UTR 0.44 TCGA-AA-3496-01 8 10468625 10468625 C T RP1L1 Missense_Mutation p.G995R 0.70 possibly_damaging(0.773) TCGA-AA-3496-01 8 21608196 21608196 C T GFRA2 Missense_Mutation p.R233H 0.67 deleterious(0) probably_damaging(1) TCGA-AA-3496-01 8 52320978 52320978 G C PXDNL Missense_Mutation p.A1069G 0.23 tolerated(0.1) benign(0.002) TCGA-AA-3496-01 8 52321226 52321226 G A PXDNL Silent p.S986S 0.42 TCGA-AA-3496-01 8 87679266 87679266 C T CNGB3 Missense_Mutation p.A247T 0.46 deleterious(0) benign(0.007) TCGA-AA-3496-01 8 95504027 95504027 C T KIAA1429 Missense_Mutation p.R1640H 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3496-01 8 95952264 95952264 G T TP53INP1 Silent p.T99T 0.10 TCGA-AA-3496-01 9 114213805 114213805 C T KIAA0368 Missense_Mutation p.G196D 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3496-01 9 130453148 130453148 G A STXBP1 3'UTR 0.47 TCGA-AA-3496-01 9 32635600 32635600 C T TAF1L 5'UTR 0.33 TCGA-AA-3496-01 9 79118164 79118164 C T GCNT1 Silent p.F289F 0.36 TCGA-AA-3496-01 9 84530720 84530720 T C SPATA31D5P RNA 0.36 TCGA-AA-3496-01 9 90296537 90296537 C T DAPK1 Silent p.P740P 0.44 TCGA-AA-3496-01 9 96209734 96209734 A C FAM120AOS 3'UTR 0.50 TCGA-AA-3496-01 X 136113282 136113282 C A GPR101 Missense_Mutation p.M184I 0.36 tolerated(0.13) benign(0.289) TCGA-AA-3496-01 X 1424543 1424543 G A CSF2RA Intron 0.50 TCGA-AA-3496-01 X 151283740 151283740 T G RP11-1007I13.4 RNA 0.48 TCGA-AA-3496-01 X 152936437 152936437 G A PNCK Missense_Mutation p.R331W 0.77 deleterious(0.04) probably_damaging(0.989) TCGA-AA-3496-01 X 3228183 3228183 G A MXRA5 Silent p.R2687R 0.67 TCGA-AA-3496-01 X 52841634 52841634 G A XAGE5 Missense_Mutation p.R15Q 0.52 tolerated(0.76) benign(0.001) TCGA-AA-3502-01 10 123903203 123903203 C T TACC2 Missense_Mutation p.P1939L 0.41 benign(0) TCGA-AA-3502-01 10 16528558 16528558 C T PTER Nonsense_Mutation p.R214* 0.38 TCGA-AA-3502-01 10 35896861 35896861 G A GJD4 Silent p.S140S 0.62 TCGA-AA-3502-01 10 43882056 43882056 T C HNRNPF 3'UTR 0.32 TCGA-AA-3502-01 10 5948209 5948209 C T FBXO18 Missense_Mutation p.R174W 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-3502-01 10 61832405 61832405 C T ANK3 Missense_Mutation p.R2745K 0.41 benign(0) TCGA-AA-3502-01 10 85991692 85991692 G A LRIT1 Silent p.Y621Y 0.33 TCGA-AA-3502-01 10 99640009 99640009 C T CRTAC1 Missense_Mutation p.V606M 0.41 deleterious_low_confidence(0) benign(0.253) TCGA-AA-3502-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3502-01 11 116662396 116662396 C T APOA5 Missense_Mutation p.A23T 0.39 tolerated(0.24) benign(0.017) TCGA-AA-3502-01 11 116798004 116798004 T A SIK3 Missense_Mutation p.N125Y 0.49 deleterious(0.03) possibly_damaging(0.71) TCGA-AA-3502-01 11 118765035 118765035 C T CXCR5 Missense_Mutation p.A261V 0.64 tolerated(0.47) probably_damaging(0.998) TCGA-AA-3502-01 11 118895536 118895536 G A SLC37A4 3'UTR 0.35 TCGA-AA-3502-01 11 32452213 32452213 C T WT1 Intron 0.56 TCGA-AA-3502-01 11 34226145 34226145 G T ABTB2 Silent p.R326R 0.33 TCGA-AA-3502-01 11 45672100 45672100 C T CHST1 Missense_Mutation p.R125Q 0.49 tolerated(0.56) possibly_damaging(0.845) TCGA-AA-3502-01 11 55904920 55904920 G A OR8J3 Missense_Mutation p.T92I 0.36 tolerated(1) benign(0.003) TCGA-AA-3502-01 11 58338184 58338184 C T LPXN Missense_Mutation p.A11T 0.44 tolerated(0.19) possibly_damaging(0.777) TCGA-AA-3502-01 11 62490160 62490160 G A HNRNPUL2 Silent p.F336F 0.49 TCGA-AA-3502-01 11 64799967 64799967 G A SNX15 Missense_Mutation p.R67H 0.44 deleterious(0) probably_damaging(1) TCGA-AA-3502-01 11 67430853 67430853 G A ALDH3B2 Missense_Mutation p.R331W 0.46 deleterious(0.01) possibly_damaging(0.901) TCGA-AA-3502-01 11 69625205 69625205 A C FGF3 Missense_Mutation p.S196R 0.51 tolerated_low_confidence(0.4) benign(0.002) TCGA-AA-3502-01 11 69625206 69625206 C A FGF3 Missense_Mutation p.S196I 0.49 tolerated_low_confidence(0.09) benign(0.052) TCGA-AA-3502-01 11 9225246 9225246 A C DENND5A Missense_Mutation p.C304G 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3502-01 11 92534448 92534448 G A FAT3 Missense_Mutation p.V2757I 0.27 benign(0.002) TCGA-AA-3502-01 11 9459445 9459445 C T IPO7 Missense_Mutation p.R805C 0.39 deleterious(0.04) benign(0.014) TCGA-AA-3502-01 12 114793376 114793376 G A TBX5 Silent p.H506H 0.39 TCGA-AA-3502-01 12 12630327 12630327 G A DUSP16 Nonsense_Mutation p.Q480* 0.09 TCGA-AA-3502-01 12 25047399 25047399 A G BCAT1 Missense_Mutation p.L42P 0.50 deleterious(0) probably_damaging(0.984) TCGA-AA-3502-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.37 deleterious(0) benign(0.361) TCGA-AA-3502-01 12 43886324 43886324 C A ADAMTS20 Missense_Mutation p.A354S 0.38 tolerated(0.07) possibly_damaging(0.879) TCGA-AA-3502-01 12 44902737 44902737 G A NELL2 Nonsense_Mutation p.Q861* 0.54 TCGA-AA-3502-01 12 49938162 49938162 A G KCNH3 Missense_Mutation p.I396V 0.29 tolerated(0.17) benign(0.401) TCGA-AA-3502-01 12 52627310 52627310 G A KRT7 Missense_Mutation p.R77Q 0.21 tolerated(0.14) benign(0.002) TCGA-AA-3502-01 12 52967277 52967277 G T KRT74 Silent p.G95G 0.38 TCGA-AA-3502-01 12 55420513 55420513 G A NEUROD4 Missense_Mutation p.R97Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3502-01 12 56154405 56154405 A G SARNP Missense_Mutation p.L174P 0.45 deleterious(0) probably_damaging(0.996) TCGA-AA-3502-01 12 57175811 57175811 G C HSD17B6 Missense_Mutation p.E123Q 0.40 deleterious(0.04) possibly_damaging(0.859) TCGA-AA-3502-01 12 57324051 57324051 G A SDR9C7 Silent p.C173C 0.50 TCGA-AA-3502-01 12 7188073 7188073 C A C1R Missense_Mutation p.K575N 0.29 tolerated(0.1) benign(0.013) TCGA-AA-3502-01 12 9262616 9262616 G A A2M Missense_Mutation p.R174C 0.41 deleterious(0) probably_damaging(0.995) TCGA-AA-3502-01 13 109617223 109617223 G A MYO16 Missense_Mutation p.C759Y 0.30 tolerated(1) benign(0.006) TCGA-AA-3502-01 13 111372118 111372118 G T ING1 Missense_Mutation p.D370Y 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3502-01 13 113699668 113699668 G A MCF2L Missense_Mutation p.R121H 0.50 deleterious(0.01) benign(0.28) TCGA-AA-3502-01 13 20277325 20277325 C T PSPC1 Missense_Mutation p.R521H 0.08 tolerated(0.15) benign(0.277) TCGA-AA-3502-01 13 27828379 27828379 T C RPL21 Silent p.Y30Y 0.46 TCGA-AA-3502-01 13 36686031 36686031 C T DCLK1 Missense_Mutation p.R233H 0.31 deleterious(0) unknown(0) TCGA-AA-3502-01 13 50204663 50204663 C T ARL11 Missense_Mutation p.T27M 0.53 deleterious(0) probably_damaging(0.911) TCGA-AA-3502-01 13 58207536 58207536 G A PCDH17 Missense_Mutation p.V286M 0.48 deleterious(0.04) possibly_damaging(0.896) TCGA-AA-3502-01 13 58208970 58208970 A - PCDH17 Frame_Shift_Del p.N765Mfs*16 0.34 TCGA-AA-3502-01 14 106054606 106054606 C T IGHA2 Missense_Mutation p.E43K 0.20 tolerated(1) benign(0) TCGA-AA-3502-01 14 20019828 20019828 C T POTEM Silent p.P131P 0.63 TCGA-AA-3502-01 14 21992061 21992061 G A SALL2 Missense_Mutation p.R601W 0.35 deleterious(0) possibly_damaging(0.847) TCGA-AA-3502-01 14 23568175 23568175 T G C14orf119 3'UTR 0.39 TCGA-AA-3502-01 14 24910963 24910963 C T SDR39U1 Missense_Mutation p.R82H 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3502-01 14 42361163 42361163 C G LRFN5 Missense_Mutation p.P699R 0.43 deleterious_low_confidence(0) benign(0.002) TCGA-AA-3502-01 14 61917563 61917563 G T PRKCH Missense_Mutation p.A236S 0.44 tolerated(0.77) benign(0.001) TCGA-AA-3502-01 14 73721269 73721269 C T PAPLN Missense_Mutation p.R424W 0.40 tolerated(0.07) benign(0.049) TCGA-AA-3502-01 14 76548653 76548653 C T IFT43 Missense_Mutation p.P109L 0.45 deleterious(0) probably_damaging(1) TCGA-AA-3502-01 14 76548988 76548988 C T IFT43 Missense_Mutation p.R138C 0.42 deleterious(0) possibly_damaging(0.674) TCGA-AA-3502-01 14 92622888 92622888 G T CPSF2 Missense_Mutation p.G503V 0.48 tolerated(0.33) benign(0.005) TCGA-AA-3502-01 14 94171002 94171002 C A UNC79 Nonsense_Mutation p.S2389* 0.29 TCGA-AA-3502-01 15 44961211 44961211 C T PATL2 Silent p.L397L 0.48 TCGA-AA-3502-01 15 78474441 78474441 G A ACSBG1 Missense_Mutation p.P314L 0.50 tolerated(0.85) possibly_damaging(0.798) TCGA-AA-3502-01 15 82335724 82335724 G A MEX3B Missense_Mutation p.S496L 0.15 deleterious(0.05) benign(0.017) TCGA-AA-3502-01 15 84373231 84373231 C A ADAMTSL3 Missense_Mutation p.Q54K 0.50 tolerated(0.1) benign(0.437) TCGA-AA-3502-01 16 10855179 10855179 C T NUBP1 Intron 0.46 TCGA-AA-3502-01 16 29996745 29996745 G A TAOK2 Missense_Mutation p.R545Q 0.43 tolerated(0.08) possibly_damaging(0.536) TCGA-AA-3502-01 16 31371096 31371096 C T ITGAX Missense_Mutation p.T169M 0.53 deleterious(0.02) benign(0.032) TCGA-AA-3502-01 16 81733305 81733305 G T CMIP Missense_Mutation p.G552C 0.39 deleterious(0.01) probably_damaging(0.949) TCGA-AA-3502-01 16 83065760 83065760 C G CDH13 Silent p.P148P 0.29 TCGA-AA-3502-01 16 85112553 85112553 C T KIAA0513 Silent p.D282D 0.58 TCGA-AA-3502-01 16 89294831 89294831 G A ZNF778 Missense_Mutation p.R684K 0.47 tolerated(0.3) benign(0.001) TCGA-AA-3502-01 17 37686951 37686951 T C CDK12 Silent p.D1285D 0.38 TCGA-AA-3502-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.44 tolerated(0.19) benign(0.022) TCGA-AA-3502-01 17 44827236 44827236 A G NSF Missense_Mutation p.N669S 0.10 tolerated(0.15) benign(0.009) TCGA-AA-3502-01 17 6594200 6594200 C T SLC13A5 Silent p.P445P 0.55 TCGA-AA-3502-01 17 66883626 66883626 G A ABCA8 Missense_Mutation p.R1016W 0.53 tolerated(0.13) benign(0.02) TCGA-AA-3502-01 17 71364700 71364700 G A SDK2 Silent p.L1671L 0.45 TCGA-AA-3502-01 17 7256822 7256822 G T KCTD11 Silent p.R187R 0.48 TCGA-AA-3502-01 17 72842972 72842972 G A GRIN2C Missense_Mutation p.R697C 0.40 deleterious(0.02) probably_damaging(0.959) TCGA-AA-3502-01 17 7721650 7721650 A G DNAH2 Missense_Mutation p.I3470V 0.09 benign(0.102) TCGA-AA-3502-01 17 81052117 81052117 G A METRNL Missense_Mutation p.E245K 0.47 tolerated(0.54) benign(0.024) TCGA-AA-3502-01 18 48703889 48703889 C T MEX3C Missense_Mutation p.R271H 0.39 deleterious(0.01) probably_damaging(1) TCGA-AA-3502-01 18 66358397 66358397 C A TMX3 Intron 0.44 TCGA-AA-3502-01 18 70502449 70502449 G A NETO1 Intron 0.53 TCGA-AA-3502-01 18 9255393 9255394 TT - ANKRD12 Frame_Shift_Del p.L711Kfs*5 0.29 TCGA-AA-3502-01 19 10395832 10395832 G A ICAM1 Missense_Mutation p.A490T 0.48 tolerated(0.16) benign(0.029) TCGA-AA-3502-01 19 16192741 16192741 G T TPM4 Missense_Mutation p.A87S 0.36 tolerated(1) benign(0.05) TCGA-AA-3502-01 19 17001020 17001020 C T F2RL3 Missense_Mutation p.A249V 0.56 tolerated(0.96) benign(0.136) TCGA-AA-3502-01 19 30166126 30166126 A G PLEKHF1 3'UTR 0.19 TCGA-AA-3502-01 19 31769774 31769774 C T TSHZ3 Missense_Mutation p.V309I 0.22 tolerated(0.18) possibly_damaging(0.716) TCGA-AA-3502-01 19 38877644 38877644 A C GGN Silent p.P86P 0.71 TCGA-AA-3502-01 19 38939439 38939439 G A RYR1 Missense_Mutation p.V370M 0.16 benign(0.283) TCGA-AA-3502-01 19 39052073 39052073 C T RYR1 Silent p.R4201R 0.27 TCGA-AA-3502-01 19 51381888 51381888 G T KLK2 3'UTR 0.21 TCGA-AA-3502-01 19 52887496 52887496 C A ZNF880 Missense_Mutation p.F221L 0.34 deleterious(0) possibly_damaging(0.877) TCGA-AA-3502-01 19 53301533 53301533 G T ZNF28 3'UTR 0.79 TCGA-AA-3502-01 19 53301534 53301534 T G ZNF28 3'UTR 0.79 TCGA-AA-3502-01 19 54254543 54254543 G A MIR522 RNA 0.21 TCGA-AA-3502-01 19 54972991 54972991 C - LENG8 3'UTR 0.21 TCGA-AA-3502-01 19 55421379 55421379 C T NCR1 Silent p.G212G 0.24 TCGA-AA-3502-01 19 55450962 55450962 G A NLRP7 Missense_Mutation p.R409W 0.18 deleterious(0.02) benign(0.009) TCGA-AA-3502-01 19 56042597 56042597 G A SBK2 Silent p.Y123Y 0.20 TCGA-AA-3502-01 19 56392873 56392873 C T NLRP4 Missense_Mutation p.L969F 0.22 tolerated(0.42) benign(0.289) TCGA-AA-3502-01 19 57175969 57175969 C T ZNF835 Missense_Mutation p.G200S 0.19 deleterious(0) probably_damaging(0.992) TCGA-AA-3502-01 19 57326916 57326916 C T PEG3 Missense_Mutation p.R965Q 0.26 tolerated(0.12) probably_damaging(0.963) TCGA-AA-3502-01 19 7585314 7585314 G C ZNF358 Missense_Mutation p.V396L 0.33 deleterious(0.02) probably_damaging(0.978) TCGA-AA-3502-01 1 1394593 1394593 C T ATAD3C Missense_Mutation p.T265M 0.49 tolerated(0.06) benign(0.15) TCGA-AA-3502-01 1 156347171 156347171 C T RHBG Silent p.S89S 0.44 TCGA-AA-3502-01 1 161695955 161695955 A G FCRLB Intron 0.38 TCGA-AA-3502-01 1 173446537 173446537 A G PRDX6 Translation_Start_Site p.M1? 0.44 deleterious(0) benign(0.174) TCGA-AA-3502-01 1 215759898 215759898 C T KCTD3 Silent p.I229I 0.48 TCGA-AA-3502-01 1 215956198 215956198 A G USH2A Silent p.A3489A 0.38 TCGA-AA-3502-01 1 231298836 231298836 G A TRIM67 Missense_Mutation p.G41S 0.30 tolerated(0.62) benign(0.01) TCGA-AA-3502-01 1 23418666 23418666 G A LUZP1 Nonsense_Mutation p.R697* 0.44 TCGA-AA-3502-01 1 2411292 2411292 G A PLCH2 Missense_Mutation p.E104K 0.53 tolerated(0.14) benign(0.084) TCGA-AA-3502-01 1 32625048 32625048 G T KPNA6 Missense_Mutation p.Q158H 0.44 tolerated(0.09) benign(0.003) TCGA-AA-3502-01 1 32625049 32625049 C T KPNA6 Nonsense_Mutation p.Q159* 0.44 TCGA-AA-3502-01 1 34190972 34190972 G A CSMD2 Silent p.I851I 0.48 TCGA-AA-3502-01 1 35577443 35577443 T C ZMYM1 Silent p.V344V 0.39 TCGA-AA-3502-01 1 38227248 38227248 C T EPHA10 Missense_Mutation p.E227K 0.38 deleterious(0.05) probably_damaging(0.949) TCGA-AA-3502-01 1 40879698 40879698 G A SMAP2 Intron 0.42 TCGA-AA-3502-01 1 46509495 46509495 G T PIK3R3 Silent p.G412G 0.34 TCGA-AA-3502-01 1 55152120 55152120 C T MROH7 Missense_Mutation p.R904C 0.67 tolerated(0.23) benign(0.016) TCGA-AA-3502-01 1 6209103 6209103 G A CHD5 Silent p.D398D 0.42 TCGA-AA-3502-01 1 64515649 64515649 T G ROR1 Missense_Mutation p.F150L 0.41 tolerated(0.95) benign(0.002) TCGA-AA-3502-01 1 7811352 7811352 C T CAMTA1 Missense_Mutation p.R1595W 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-3502-01 20 18143174 18143174 A G CSRP2BP Missense_Mutation p.E419G 0.36 tolerated(0.11) benign(0.003) TCGA-AA-3502-01 20 41419952 41419952 G A PTPRT Silent p.Y123Y 0.43 TCGA-AA-3502-01 20 48098824 48098824 G A KCNB1 Missense_Mutation p.T65M 0.58 deleterious(0) probably_damaging(0.984) TCGA-AA-3502-01 20 50407919 50407919 G A SALL4 Missense_Mutation p.A368V 0.49 tolerated(0.96) benign(0.079) TCGA-AA-3502-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.42 deleterious(0.01) probably_damaging(1) TCGA-AA-3502-01 20 60470094 60470094 C T CDH4 Silent p.T393T 0.45 TCGA-AA-3502-01 21 10916369 10916369 C T TPTE Splice_Site p.X426_splice 0.16 TCGA-AA-3502-01 21 31852463 31852463 G T KRTAP19-1 Silent p.G58G 0.51 TCGA-AA-3502-01 21 45107682 45107682 G A RRP1B Missense_Mutation p.R476Q 0.33 deleterious(0.03) possibly_damaging(0.755) TCGA-AA-3502-01 22 21407713 21407713 C T AC002472.13 Missense_Mutation p.A266V 0.37 deleterious(0.03) probably_damaging(0.975) TCGA-AA-3502-01 22 26839329 26839329 T A ASPHD2 3'UTR 0.40 TCGA-AA-3502-01 22 39263020 39263020 C T CBX6 Missense_Mutation p.G145R 0.32 tolerated(0.06) probably_damaging(0.98) TCGA-AA-3502-01 22 39883677 39883677 G A MGAT3 Missense_Mutation p.V109M 0.33 deleterious_low_confidence(0.01) benign(0.273) TCGA-AA-3502-01 22 50694122 50694122 G A MAPK12 Silent p.H231H 0.42 TCGA-AA-3502-01 22 51020285 51020285 C T CHKB Missense_Mutation p.D114N 0.42 deleterious(0.02) benign(0.019) TCGA-AA-3502-01 2 106721264 106721264 C T UXS1 Silent p.A303A 0.22 TCGA-AA-3502-01 2 112552402 112552402 T A ANAPC1 Missense_Mutation p.T1456S 0.41 deleterious(0.01) benign(0.268) TCGA-AA-3502-01 2 120833297 120833297 C T EPB41L5 Missense_Mutation p.T158I 0.36 deleterious(0.03) probably_damaging(0.968) TCGA-AA-3502-01 2 15679477 15679477 G A NBAS Missense_Mutation p.P128L 0.41 deleterious(0) probably_damaging(0.992) TCGA-AA-3502-01 2 165365336 165365336 G A GRB14 Silent p.S281S 0.37 TCGA-AA-3502-01 2 179474268 179474268 G C TTN Missense_Mutation p.L17257V 0.29 TCGA-AA-3502-01 2 179482562 179482562 A T TTN Missense_Mutation p.I15839N 0.43 TCGA-AA-3502-01 2 189929734 189929734 G T COL5A2 Missense_Mutation p.P538Q 0.41 possibly_damaging(0.77) TCGA-AA-3502-01 2 216284001 216284001 C G FN1 Missense_Mutation p.G595R 0.53 deleterious(0) probably_damaging(1) TCGA-AA-3502-01 2 232646474 232646474 C T COPS7B 5'Flank 0.25 TCGA-AA-3502-01 2 233271584 233271584 G A ALPPL2 5'UTR 0.56 TCGA-AA-3502-01 2 31133824 31133824 G C GALNT14 Silent p.V539V 0.42 TCGA-AA-3502-01 2 69297790 69297790 G A ANTXR1 Missense_Mutation p.R103H 0.40 deleterious(0.03) probably_damaging(0.916) TCGA-AA-3502-01 2 79254157 79254157 A C REG3G Intron 0.50 TCGA-AA-3502-01 2 80782906 80782906 C A CTNNA2 Silent p.I543I 0.50 TCGA-AA-3502-01 2 96780487 96780487 A G ADRA2B 3'UTR 0.14 TCGA-AA-3502-01 2 96992986 96992986 G A ITPRIPL1 Missense_Mutation p.R214H 0.48 tolerated(0.45) benign(0.023) TCGA-AA-3502-01 2 97215166 97215166 G A ARID5A Missense_Mutation p.E77K 0.45 deleterious(0) possibly_damaging(0.744) TCGA-AA-3502-01 2 98409945 98409945 C T TMEM131 Missense_Mutation p.R1153Q 0.67 deleterious(0.03) benign(0.352) TCGA-AA-3502-01 3 118945741 118945741 T C B4GALT4 Missense_Mutation p.E134G 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3502-01 3 121413087 121413087 C T GOLGB1 Missense_Mutation p.E2095K 0.39 probably_damaging(0.999) TCGA-AA-3502-01 3 126261327 126261327 T C CHST13 Missense_Mutation p.I311T 0.29 deleterious(0) possibly_damaging(0.883) TCGA-AA-3502-01 3 131254030 131254030 G T CPNE4 3'UTR 0.45 TCGA-AA-3502-01 3 138763674 138763674 C T PRR23C 5'UTR 0.53 TCGA-AA-3502-01 3 141640861 141640861 A T ATP1B3 Missense_Mutation p.M209L 0.54 tolerated(0.36) benign(0.001) TCGA-AA-3502-01 3 142297527 142297527 T A ATR Missense_Mutation p.E7V 0.29 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-AA-3502-01 3 186915363 186915363 C T RTP1 Silent p.S20S 0.56 TCGA-AA-3502-01 3 4726801 4726801 A C ITPR1 Silent p.R1190R 0.41 TCGA-AA-3502-01 3 48679356 48679356 G A CELSR3 Missense_Mutation p.R2918W 0.47 deleterious(0) possibly_damaging(0.726) TCGA-AA-3502-01 3 51990879 51990879 G A GPR62 3'UTR 0.35 TCGA-AA-3502-01 3 52550742 52550742 G A STAB1 Missense_Mutation p.A1441T 0.28 tolerated(0.11) benign(0.047) TCGA-AA-3502-01 3 54880478 54880478 C T CACNA2D3 Missense_Mutation p.P537L 0.48 deleterious(0) probably_damaging(1) TCGA-AA-3502-01 3 57391537 57391537 C T DNAH12 Missense_Mutation p.R2121H 0.46 deleterious(0) possibly_damaging(0.812) TCGA-AA-3502-01 3 72427368 72427368 C T RYBP 3'UTR 0.50 TCGA-AA-3502-01 3 78667190 78667190 G A ROBO1 Missense_Mutation p.R1293W 0.49 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3502-01 3 97705722 97705722 T G GABRR3 Silent p.S403S 0.40 TCGA-AA-3502-01 4 113362226 113362226 G C ALPK1 Missense_Mutation p.R1231P 0.54 tolerated(0.09) possibly_damaging(0.869) TCGA-AA-3502-01 4 134084408 134084408 C T PCDH10 Missense_Mutation p.T1025M 0.44 tolerated_low_confidence(0.21) benign(0.014) TCGA-AA-3502-01 4 156634495 156634495 G T GUCY1A3 Missense_Mutation p.E444D 0.47 tolerated(0.27) probably_damaging(0.998) TCGA-AA-3502-01 4 166388901 166388901 G A CPE Missense_Mutation p.R189Q 0.51 deleterious(0) possibly_damaging(0.879) TCGA-AA-3502-01 4 185038131 185038131 C T ENPP6 Missense_Mutation p.D245N 0.50 tolerated(0.13) probably_damaging(1) TCGA-AA-3502-01 4 189018496 189018496 G T TRIML2 Missense_Mutation p.A159E 0.32 deleterious(0.01) possibly_damaging(0.701) TCGA-AA-3502-01 4 2934852 2934874 GGGCGCCTCCCCAAGCAGTCAGA - MFSD10 Frame_Shift_Del p.S111Gfs*48 0.43 TCGA-AA-3502-01 4 5642531 5642531 C A EVC2 Missense_Mutation p.D394Y 0.32 tolerated(0.08) probably_damaging(0.968) TCGA-AA-3502-01 4 6107217 6107217 G A JAKMIP1 Missense_Mutation p.R203C 0.41 deleterious(0) probably_damaging(0.959) TCGA-AA-3502-01 4 7716004 7716004 G A SORCS2 Missense_Mutation p.R676Q 0.21 tolerated(0.09) probably_damaging(0.977) TCGA-AA-3502-01 4 84376622 84376622 G C HELQ Silent p.L75L 0.48 TCGA-AA-3502-01 4 89198321 89198321 G A PPM1K Missense_Mutation p.S172L 0.43 tolerated(0.28) benign(0.002) TCGA-AA-3502-01 4 94750652 94750652 A - ATOH1 Frame_Shift_Del p.D192Afs*111 0.33 TCGA-AA-3502-01 5 1087149 1087149 C G SLC12A7 Splice_Site p.X182_splice 0.46 TCGA-AA-3502-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.32 TCGA-AA-3502-01 5 112175531 112175531 G T APC Missense_Mutation p.V1414L 0.35 benign(0.05) TCGA-AA-3502-01 5 112175532 112175532 T G APC Missense_Mutation p.V1414G 0.36 possibly_damaging(0.701) TCGA-AA-3502-01 5 13900367 13900367 G T DNAH5 Missense_Mutation p.T736N 0.40 benign(0.002) TCGA-AA-3502-01 5 140215891 140215891 C T PCDHA7 Silent p.D641D 0.49 TCGA-AA-3502-01 5 140237138 140237138 C T PCDHA10 Missense_Mutation p.S502L 0.44 tolerated_low_confidence(0.2) benign(0.004) TCGA-AA-3502-01 5 140346837 140346837 G A PCDHAC2 Silent p.A162A 0.50 TCGA-AA-3502-01 5 140589130 140589130 C T PCDHB12 Silent p.G217G 0.51 TCGA-AA-3502-01 5 146781178 146781178 G A DPYSL3 Missense_Mutation p.A412V 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3502-01 5 161128787 161128787 C G GABRA6 3'UTR 0.38 TCGA-AA-3502-01 5 166711940 166711940 G A TENM2 Missense_Mutation p.R33H 0.33 deleterious_low_confidence(0) benign(0.013) TCGA-AA-3502-01 5 167927720 167927720 G A RARS Missense_Mutation p.R316H 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-3502-01 5 179996115 179996115 A G CNOT6 Missense_Mutation p.K345E 0.08 tolerated(0.53) benign(0.216) TCGA-AA-3502-01 5 33938066 33938066 C T RXFP3 Silent p.I407I 0.50 TCGA-AA-3502-01 5 5200358 5200358 G A ADAMTS16 Missense_Mutation p.R476H 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-3502-01 5 69328192 69328192 C T SERF1B Intron 0.18 TCGA-AA-3502-01 6 107827552 107827552 A G SOBP Silent p.S114S 0.37 TCGA-AA-3502-01 6 108492735 108492735 C T NR2E1 Silent p.C33C 0.46 TCGA-AA-3502-01 6 108497757 108497757 G A NR2E1 Missense_Mutation p.A104T 0.40 tolerated(0.08) benign(0.09) TCGA-AA-3502-01 6 152469481 152469481 C T SYNE1 Silent p.R8225R 0.27 TCGA-AA-3502-01 6 154439847 154439847 G A OPRM1 Silent p.P491P 0.58 TCGA-AA-3502-01 6 160969593 160969593 G A LPA Missense_Mutation p.T1691M 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3502-01 6 165713870 165713870 G C C6orf118 Missense_Mutation p.L287V 0.45 tolerated(0.14) possibly_damaging(0.527) TCGA-AA-3502-01 6 28333980 28333980 C T ZKSCAN3 Missense_Mutation p.A512V 0.35 tolerated(0.56) benign(0.005) TCGA-AA-3502-01 6 32024621 32024621 G C TNXB Missense_Mutation p.P2629A 0.30 benign(0.146) TCGA-AA-3502-01 6 34059806 34059806 C T GRM4 Missense_Mutation p.R197H 0.52 deleterious(0) probably_damaging(0.999) TCGA-AA-3502-01 6 39284130 39284130 G A KCNK16 Intron 0.68 TCGA-AA-3502-01 6 55625330 55625330 A C BMP5 Missense_Mutation p.D343E 0.47 tolerated(0.31) benign(0.012) TCGA-AA-3502-01 6 80634727 80634727 G A ELOVL4 Missense_Mutation p.A104V 0.34 tolerated(0.92) benign(0.206) TCGA-AA-3502-01 6 96655467 96655467 A G FUT9 3'UTR 0.39 TCGA-AA-3502-01 7 100482979 100482979 C T SRRT Silent p.A435A 0.29 TCGA-AA-3502-01 7 101845271 101845271 C T CUX1 Silent p.T909T 0.23 TCGA-AA-3502-01 7 104749419 104749419 C T KMT2E Missense_Mutation p.R1167C 0.44 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-AA-3502-01 7 149476736 149476736 C A SSPO RNA 0.69 TCGA-AA-3502-01 7 20691091 20691091 C T ABCB5 Nonsense_Mutation p.R461* 0.32 TCGA-AA-3502-01 7 6027154 6027154 G A PMS2 Silent p.D414D 0.25 TCGA-AA-3502-01 7 70255641 70255641 G A AUTS2 Missense_Mutation p.G1147S 0.11 tolerated(0.65) benign(0.034) TCGA-AA-3502-01 7 720234 720234 C T PRKAR1B Missense_Mutation p.E103K 0.78 deleterious(0.01) probably_damaging(0.983) TCGA-AA-3502-01 8 10470690 10470690 G A RP1L1 Silent p.G306G 0.62 TCGA-AA-3502-01 8 10756047 10756047 C T XKR6 Silent p.T447T 0.28 TCGA-AA-3502-01 8 12943940 12943940 C A DLC1 Missense_Mutation p.C1442F 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3502-01 8 1497722 1497722 G A DLGAP2 Missense_Mutation p.R288H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3502-01 8 17823951 17823951 C G PCM1 Missense_Mutation p.Q1064E 0.21 deleterious(0) probably_damaging(0.994) TCGA-AA-3502-01 8 26614092 26614092 G C ADRA1A Intron 0.59 TCGA-AA-3502-01 8 52258453 52258453 C T PXDNL Missense_Mutation p.R1319H 0.30 deleterious(0) benign(0.393) TCGA-AA-3502-01 8 54628405 54628405 A G ATP6V1H 3'UTR 0.67 TCGA-AA-3502-01 8 88249247 88249247 G A CNBD1 Silent p.S226S 0.70 TCGA-AA-3502-01 9 126795136 126795136 C T LHX2 3'UTR 0.69 TCGA-AA-3502-01 9 139804381 139804381 G A TRAF2 Missense_Mutation p.E180K 0.54 tolerated(0.08) benign(0.041) TCGA-AA-3502-01 9 140373538 140373538 G A PNPLA7 Silent p.R911R 0.55 TCGA-AA-3502-01 9 140918115 140918115 G A CACNA1B Missense_Mutation p.E974K 0.50 tolerated(0.2) possibly_damaging(0.704) TCGA-AA-3502-01 9 3898639 3898639 A C GLIS3 Intron 0.60 TCGA-AA-3502-01 9 39085701 39085701 T G CNTNAP3 Intron 0.80 TCGA-AA-3502-01 9 6986381 6986381 A T KDM4C Silent p.I464I 0.33 TCGA-AA-3502-01 9 86894965 86894965 G A SLC28A3 Missense_Mutation p.R585C 0.42 deleterious(0.03) benign(0.056) TCGA-AA-3502-01 X 104999320 104999320 A G IL1RAPL2 Missense_Mutation p.R448G 0.91 deleterious(0) probably_damaging(1) TCGA-AA-3502-01 X 105278263 105278264 - A SERPINA7 Frame_Shift_Ins p.S336Ffs*17 0.44 TCGA-AA-3502-01 X 139865906 139865907 - A CDR1 Frame_Shift_Ins p.S209Ffs*17 0.47 TCGA-AA-3502-01 X 140993195 140993195 G A MAGEC1 Missense_Mutation p.G2E 0.86 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-AA-3502-01 X 147088342 147088342 G T FMR1NB Missense_Mutation p.C173F 0.11 deleterious(0) possibly_damaging(0.506) TCGA-AA-3502-01 X 21674284 21674284 G A KLHL34 Silent p.I541I 0.82 TCGA-AA-3506-01 10 105037239 105037239 C T INA Missense_Mutation p.R91C 0.53 deleterious(0) probably_damaging(1) TCGA-AA-3506-01 10 125650988 125650988 G A CPXM2 Missense_Mutation p.A63V 0.21 tolerated_low_confidence(0.34) benign(0.004) TCGA-AA-3506-01 10 135086875 135086875 G A ADAM8 Silent p.H152H 0.38 TCGA-AA-3506-01 10 73121910 73121910 G A SLC29A3 Missense_Mutation p.A325T 0.32 deleterious(0.03) possibly_damaging(0.715) TCGA-AA-3506-01 10 8106040 8106040 G T GATA3 Missense_Mutation p.C288F 0.14 deleterious(0) possibly_damaging(0.819) TCGA-AA-3506-01 11 10514915 10514915 C T AMPD3 Missense_Mutation p.A329V 0.27 deleterious(0.01) probably_damaging(1) TCGA-AA-3506-01 11 124670191 124670191 C T MSANTD2 Missense_Mutation p.G29D 0.19 tolerated_low_confidence(1) benign(0.035) TCGA-AA-3506-01 11 35642006 35642006 A G FJX1 3'UTR 0.26 TCGA-AA-3506-01 11 46407801 46407801 C T CHRM4 Missense_Mutation p.V103M 0.27 deleterious(0.02) probably_damaging(0.975) TCGA-AA-3506-01 11 47814441 47814441 C T NUP160 Missense_Mutation p.R1116Q 0.37 tolerated(0.4) benign(0.012) TCGA-AA-3506-01 11 5410951 5410951 C T OR51M1 Missense_Mutation p.A108V 0.28 deleterious(0.04) possibly_damaging(0.595) TCGA-AA-3506-01 11 61026712 61026712 C T VWCE Missense_Mutation p.R768Q 0.31 tolerated_low_confidence(0.13) benign(0.037) TCGA-AA-3506-01 11 65113524 65113524 G C DPF2 Missense_Mutation p.R300P 0.60 deleterious(0) probably_damaging(0.994) TCGA-AA-3506-01 12 102869491 102869491 C T IGF1 Silent p.P50P 0.25 TCGA-AA-3506-01 12 113590672 113590672 C T CCDC42B Missense_Mutation p.R83C 0.24 deleterious(0.03) benign(0.08) TCGA-AA-3506-01 12 119631777 119631777 C T HSPB8 3'UTR 0.21 TCGA-AA-3506-01 12 122268030 122268030 C T SETD1B Missense_Mutation p.S1886L 0.26 unknown(0) TCGA-AA-3506-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.52 deleterious(0.04) possibly_damaging(0.506) TCGA-AA-3506-01 12 4645225 4645225 G A C12orf4 Missense_Mutation p.R46C 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3506-01 12 53683205 53683205 G A ESPL1 Missense_Mutation p.R1647Q 0.18 tolerated(1) benign(0.002) TCGA-AA-3506-01 12 56420653 56420653 C T IKZF4 Silent p.S125S 0.22 TCGA-AA-3506-01 12 6730303 6730303 G A LPAR5 Missense_Mutation p.P38S 0.45 tolerated(0.07) possibly_damaging(0.578) TCGA-AA-3506-01 12 72666963 72666963 G A TRHDE Silent p.P135P 0.24 TCGA-AA-3506-01 12 8671623 8671623 G T CLEC4D Missense_Mutation p.C84F 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3506-01 13 101910793 101910793 C G NALCN Splice_Site p.X422_splice 0.17 TCGA-AA-3506-01 13 26117523 26117523 G A ATP8A2 Missense_Mutation p.D292N 0.51 deleterious(0) possibly_damaging(0.899) TCGA-AA-3506-01 13 29599451 29599451 C A MTUS2 Silent p.R216R 0.25 TCGA-AA-3506-01 13 29600571 29600571 G A MTUS2 Missense_Mutation p.R589H 0.19 deleterious(0.02) possibly_damaging(0.497) TCGA-AA-3506-01 13 31803338 31803338 A G B3GALTL Silent p.V59V 0.21 TCGA-AA-3506-01 13 37012865 37012865 G T CCNA1 Missense_Mutation p.V252L 0.50 deleterious(0) possibly_damaging(0.485) TCGA-AA-3506-01 13 37679473 37679473 G A CSNK1A1L 5'UTR 0.18 TCGA-AA-3506-01 13 48528347 48528347 G C SUCLA2 Missense_Mutation p.F345L 0.23 deleterious(0) probably_damaging(0.986) TCGA-AA-3506-01 13 50123608 50123608 C T RCBTB1 Missense_Mutation p.R344H 0.27 deleterious(0.02) benign(0.032) TCGA-AA-3506-01 13 52854029 52854029 C T RP11-248G5.8 RNA 0.12 TCGA-AA-3506-01 13 95091987 95091987 C T DCT 3'UTR 0.42 TCGA-AA-3506-01 13 98829218 98829218 G A RNF113B Silent p.D91D 0.37 TCGA-AA-3506-01 14 19988107 19988107 G A POTEM 3'UTR 0.19 TCGA-AA-3506-01 14 24529960 24529960 C T LRRC16B Missense_Mutation p.R729W 0.29 deleterious(0) probably_damaging(0.987) TCGA-AA-3506-01 14 29261342 29261342 T G C14orf23 Missense_Mutation p.F127V 0.50 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-AA-3506-01 14 51446204 51446205 - T TRIM9 Frame_Shift_Ins p.N657Kfs*9 0.21 TCGA-AA-3506-01 14 52493971 52493971 C T NID2 Silent p.T874T 0.20 TCGA-AA-3506-01 14 73726075 73726075 C A PAPLN Missense_Mutation p.L576M 0.30 tolerated(0.08) possibly_damaging(0.864) TCGA-AA-3506-01 15 24926569 24926569 T A NPAP1 3'UTR 0.37 TCGA-AA-3506-01 15 42643589 42643589 G A GANC Missense_Mutation p.G865D 0.36 probably_damaging(1) TCGA-AA-3506-01 15 51792410 51792410 G T DMXL2 Nonsense_Mutation p.S1004* 0.29 TCGA-AA-3506-01 15 59186379 59186379 G A SLTM Missense_Mutation p.P464L 0.33 deleterious(0) unknown(0) TCGA-AA-3506-01 15 62942320 62942320 G A TLN2 Silent p.P58P 0.32 TCGA-AA-3506-01 15 77096887 77096887 C A SCAPER Missense_Mutation p.D161Y 0.34 deleterious(0) probably_damaging(0.994) TCGA-AA-3506-01 16 2314622 2314622 T - RNPS1 Frame_Shift_Del p.K8Rfs*5 0.27 TCGA-AA-3506-01 16 2522434 2522434 C T NTN3 Silent p.Y244Y 0.30 TCGA-AA-3506-01 16 3486729 3486729 G A ZNF597 Missense_Mutation p.R324C 0.31 tolerated(0.23) benign(0.2) TCGA-AA-3506-01 16 4790324 4790324 C T C16orf71 Silent p.G149G 0.30 TCGA-AA-3506-01 16 70505194 70505194 C T FUK Missense_Mutation p.T427M 0.33 tolerated(0.06) benign(0.008) TCGA-AA-3506-01 16 70954757 70954757 G A HYDIN Missense_Mutation p.R2508C 0.34 probably_damaging(0.942) TCGA-AA-3506-01 16 712016 712016 C T WDR90 Silent p.A1330A 0.34 TCGA-AA-3506-01 16 71510052 71510052 C T ZNF19 Missense_Mutation p.R133H 0.23 tolerated(0.43) benign(0.132) TCGA-AA-3506-01 16 74750334 74750334 T C FA2H Missense_Mutation p.Y317C 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3506-01 16 79634500 79634500 T A MAF 5'UTR 0.33 TCGA-AA-3506-01 16 89838223 89838223 C A FANCA Splice_Site p.X672_splice 0.35 TCGA-AA-3506-01 16 9858586 9858586 C T GRIN2A Missense_Mutation p.G939R 0.32 tolerated(1) probably_damaging(1) TCGA-AA-3506-01 17 18022607 18022607 T C MYO15A Missense_Mutation p.S165P 0.33 benign(0.388) TCGA-AA-3506-01 17 1840501 1840501 G A RTN4RL1 Silent p.H205H 0.12 TCGA-AA-3506-01 17 32956191 32956191 C T TMEM132E Missense_Mutation p.R346W 0.24 deleterious(0) possibly_damaging(0.862) TCGA-AA-3506-01 17 38711332 38711332 C T CCR7 Missense_Mutation p.A267T 0.09 deleterious(0.03) possibly_damaging(0.604) TCGA-AA-3506-01 17 39334112 39334112 C T KRTAP4-2 Missense_Mutation p.R102H 0.29 tolerated(0.09) unknown(0) TCGA-AA-3506-01 17 40095387 40095387 G T TTC25 RNA 0.20 TCGA-AA-3506-01 17 40706516 40706516 C T HSD17B1 Silent p.H211H 0.14 TCGA-AA-3506-01 17 4092765 4092765 A G ANKFY1 Missense_Mutation p.L503S 0.46 deleterious(0) probably_damaging(0.991) TCGA-AA-3506-01 17 42636737 42636737 G A FZD2 Missense_Mutation p.G561S 0.21 tolerated_low_confidence(0.08) benign(0.122) TCGA-AA-3506-01 17 46103769 46103769 G T COPZ2 3'UTR 0.26 TCGA-AA-3506-01 17 48268813 48268813 G T COL1A1 Silent p.G722G 0.33 TCGA-AA-3506-01 17 6021366 6021366 C T WSCD1 Silent p.H411H 0.32 TCGA-AA-3506-01 17 6684108 6684108 G A FBXO39 Silent p.P307P 0.29 TCGA-AA-3506-01 17 70119717 70119717 C - SOX9 Frame_Shift_Del p.T243Pfs*10 0.30 TCGA-AA-3506-01 17 70119920 70119920 G T SOX9 Missense_Mutation p.A308S 0.23 tolerated(0.2) benign(0.006) TCGA-AA-3506-01 17 71419605 71419605 C T SDK2 Missense_Mutation p.R606Q 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3506-01 17 79093238 79093238 C T AATK Silent p.A1342A 0.36 TCGA-AA-3506-01 18 31709948 31709948 G A NOL4 Missense_Mutation p.R101W 0.38 deleterious(0) possibly_damaging(0.847) TCGA-AA-3506-01 18 44260212 44260212 C T ST8SIA5 Silent p.A308A 0.34 TCGA-AA-3506-01 18 76754394 76754394 C T SALL3 Silent p.D801D 0.30 TCGA-AA-3506-01 19 1360942 1360942 G C MUM1 Missense_Mutation p.S342T 0.43 tolerated(0.07) possibly_damaging(0.682) TCGA-AA-3506-01 19 1369639 1369639 G T MUM1 Missense_Mutation p.D516Y 0.05 deleterious(0) probably_damaging(0.984) TCGA-AA-3506-01 19 2873531 2873531 C T ZNF556 Missense_Mutation p.T14M 0.32 deleterious(0) unknown(0) TCGA-AA-3506-01 19 35176075 35176075 T A ZNF302 Missense_Mutation p.F378Y 0.49 deleterious(0) possibly_damaging(0.679) TCGA-AA-3506-01 19 40317941 40317941 G A DYRK1B Missense_Mutation p.T360M 0.24 tolerated(0.22) possibly_damaging(0.479) TCGA-AA-3506-01 19 42314392 42314392 G A CEACAM3 Silent p.S209S 0.17 TCGA-AA-3506-01 19 44418593 44418593 T C ZNF45 Missense_Mutation p.Y332C 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3506-01 19 46998569 46998569 G A PNMAL2 Nonsense_Mutation p.R52* 0.25 TCGA-AA-3506-01 19 50243093 50243093 C T TSKS Missense_Mutation p.M573I 0.21 tolerated_low_confidence(0.19) benign(0.006) TCGA-AA-3506-01 19 51140638 51140638 G A SYT3 Missense_Mutation p.R11W 0.25 deleterious(0) possibly_damaging(0.877) TCGA-AA-3506-01 19 52568530 52568530 G A ZNF841 Nonsense_Mutation p.R869* 0.06 TCGA-AA-3506-01 19 54314355 54314355 G A NLRP12 Silent p.T186T 0.21 TCGA-AA-3506-01 19 55597823 55597823 C T EPS8L1 Missense_Mutation p.R572C 0.28 tolerated(0.05) benign(0.003) TCGA-AA-3506-01 19 56895404 56895404 C A ZNF582 Missense_Mutation p.S461I 0.27 tolerated(0.34) benign(0.001) TCGA-AA-3506-01 19 6694539 6694539 C T C3 Silent p.T1019T 0.41 TCGA-AA-3506-01 19 9800900 9800900 C A ZNF812 Missense_Mutation p.A427S 0.44 tolerated(0.88) possibly_damaging(0.903) TCGA-AA-3506-01 1 111861757 111861757 A - CHIA Frame_Shift_Del p.N312Mfs*68 0.20 TCGA-AA-3506-01 1 11594476 11594476 G A PTCHD2 Silent p.S1138S 0.29 TCGA-AA-3506-01 1 12835290 12835290 C T PRAMEF12 Missense_Mutation p.R94C 0.20 tolerated(0.09) possibly_damaging(0.453) TCGA-AA-3506-01 1 151009190 151009190 A G BNIPL 5'UTR 0.06 TCGA-AA-3506-01 1 156552863 156552863 C T TTC24 Missense_Mutation p.R314W 0.26 deleterious(0.04) benign(0.14) TCGA-AA-3506-01 1 158597419 158597419 T C SPTA1 Missense_Mutation p.N1887S 0.23 tolerated(1) benign(0.007) TCGA-AA-3506-01 1 160924537 160924537 C T ITLN2 5'UTR 0.32 TCGA-AA-3506-01 1 165389155 165389155 C T RXRG Missense_Mutation p.G132R 0.30 tolerated(0.36) benign(0.348) TCGA-AA-3506-01 1 210334284 210334284 T C SYT14 Missense_Mutation p.L586S 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3506-01 1 237732499 237732499 G A RYR2 Missense_Mutation p.D1160N 0.26 probably_damaging(0.999) TCGA-AA-3506-01 1 237947448 237947448 G A RYR2 Missense_Mutation p.E4146K 0.32 probably_damaging(0.998) TCGA-AA-3506-01 1 243328231 243328231 A T CEP170 Missense_Mutation p.S1011T 0.09 tolerated(0.28) benign(0.005) TCGA-AA-3506-01 1 29189622 29189622 G A OPRD1 Missense_Mutation p.V316M 0.36 deleterious(0.01) benign(0.097) TCGA-AA-3506-01 1 32257835 32257835 C A SPOCD1 Silent p.L981L 0.31 TCGA-AA-3506-01 1 33360450 33360450 G A TMEM54 Missense_Mutation p.R209C 0.31 deleterious(0.01) benign(0.003) TCGA-AA-3506-01 1 33760768 33760768 C T ZNF362 Silent p.N336N 0.28 TCGA-AA-3506-01 1 34076791 34076791 G A CSMD2 Missense_Mutation p.R2025W 0.26 deleterious(0.03) probably_damaging(0.991) TCGA-AA-3506-01 1 36766574 36766574 A C THRAP3 Missense_Mutation p.E797D 0.29 tolerated(0.23) probably_damaging(0.953) TCGA-AA-3506-01 1 6534133 6534133 G A PLEKHG5 Silent p.T256T 0.23 TCGA-AA-3506-01 1 84418062 84418062 A C TTLL7 5'UTR 0.38 TCGA-AA-3506-01 1 95001540 95001540 C T F3 Silent p.E131E 0.31 TCGA-AA-3506-01 20 31672800 31672800 G T BPIFB4 Missense_Mutation p.K260N 0.11 tolerated(0.05) benign(0.012) TCGA-AA-3506-01 21 28338345 28338345 C T ADAMTS5 Silent p.A122A 0.40 TCGA-AA-3506-01 22 22707584 22707584 C A IGLV5-48 Missense_Mutation p.Q58K 0.44 deleterious(0.02) probably_damaging(0.917) TCGA-AA-3506-01 22 30660299 30660299 G T OSM Missense_Mutation p.A111D 0.33 tolerated(0.33) benign(0.388) TCGA-AA-3506-01 22 44581709 44581709 C T PARVG Missense_Mutation p.P34L 0.08 tolerated(0.11) benign(0.006) TCGA-AA-3506-01 22 50705337 50705337 G A MAPK11 Intron 0.20 TCGA-AA-3506-01 2 130737967 130737967 C T RAB6C Silent p.Y93Y 0.33 TCGA-AA-3506-01 2 148653944 148653944 C T ACVR2A Nonsense_Mutation p.Q44* 0.53 TCGA-AA-3506-01 2 179360367 179360367 T C PLEKHA3 Missense_Mutation p.S199P 0.33 tolerated(0.05) possibly_damaging(0.806) TCGA-AA-3506-01 2 179642731 179642731 G A TTN Intron 0.38 TCGA-AA-3506-01 2 182543033 182543033 C T NEUROD1 Silent p.A185A 0.30 TCGA-AA-3506-01 2 210588342 210588342 C A MAP2 Intron 0.27 TCGA-AA-3506-01 2 219506759 219506759 G A ZNF142 Missense_Mutation p.R1494C 0.27 deleterious(0) possibly_damaging(0.898) TCGA-AA-3506-01 2 219888038 219888038 C T CCDC108 Missense_Mutation p.R904H 0.28 tolerated(0.35) benign(0.018) TCGA-AA-3506-01 2 220504247 220504247 G A SLC4A3 Missense_Mutation p.G1050S 0.28 deleterious(0.01) possibly_damaging(0.469) TCGA-AA-3506-01 2 227895212 227895212 C T COL4A4 Missense_Mutation p.G1307D 0.23 unknown(0) TCGA-AA-3506-01 2 233323650 233323650 C T ALPI Missense_Mutation p.R461C 0.32 deleterious(0) probably_damaging(0.972) TCGA-AA-3506-01 2 234229303 234229303 G A SAG Missense_Mutation p.R70H 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3506-01 2 25377321 25377321 G T EFR3B 3'UTR 0.31 TCGA-AA-3506-01 2 29293649 29293649 G T C2orf71 Missense_Mutation p.A1160E 0.20 tolerated(0.2) possibly_damaging(0.663) TCGA-AA-3506-01 2 31215758 31215758 C T GALNT14 Intron 0.29 TCGA-AA-3506-01 2 40656316 40656316 T C SLC8A1 Missense_Mutation p.T369A 0.27 deleterious(0) probably_damaging(0.979) TCGA-AA-3506-01 2 43965556 43965556 T C PLEKHH2 Missense_Mutation p.L1007S 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-3506-01 2 50280652 50280652 G T NRXN1 Silent p.G1335G 0.31 TCGA-AA-3506-01 2 5839736 5839736 C T SOX11 3'UTR 0.30 TCGA-AA-3506-01 2 61331050 61331050 G A KIAA1841 Silent p.P476P 0.40 TCGA-AA-3506-01 2 85770662 85770662 T C MAT2A Intron 0.36 TCGA-AA-3506-01 2 96781432 96781432 C T ADRA2B Missense_Mutation p.D153N 0.27 tolerated(0.18) benign(0.005) TCGA-AA-3506-01 3 100469353 100469353 G T ABI3BP Missense_Mutation p.P1072T 0.22 deleterious(0) probably_damaging(0.981) TCGA-AA-3506-01 3 109031443 109031443 C T DPPA2 Missense_Mutation p.V44I 0.31 tolerated(0.23) benign(0.008) TCGA-AA-3506-01 3 111842283 111842283 T G GCSAM 3'UTR 0.34 TCGA-AA-3506-01 3 14551388 14551388 G A GRIP2 RNA 0.26 TCGA-AA-3506-01 3 167414865 167414865 A G PDCD10 Missense_Mutation p.L67S 0.31 tolerated(0.06) possibly_damaging(0.877) TCGA-AA-3506-01 3 172674573 172674573 C T SPATA16 Silent p.S325S 0.32 TCGA-AA-3506-01 3 27216187 27216187 G A NEK10 Silent p.D881D 0.26 TCGA-AA-3506-01 3 38835277 38835277 G A SCN10A Silent p.I75I 0.33 TCGA-AA-3506-01 3 5229937 5229937 C T AC026202.1 Missense_Mutation p.G16S 0.30 probably_damaging(0.934) TCGA-AA-3506-01 3 63976433 63976433 G A ATXN7 Missense_Mutation p.R527Q 0.30 deleterious(0.03) benign(0.318) TCGA-AA-3506-01 3 93617307 93617307 A G PROS1 Silent p.D278D 0.30 TCGA-AA-3506-01 3 97595948 97595948 A G CRYBG3 Missense_Mutation p.I22M 0.30 deleterious_low_confidence(0) benign(0.193) TCGA-AA-3506-01 3 9948689 9948689 C T IL17RE Missense_Mutation p.R191W 0.31 deleterious(0.04) benign(0.015) TCGA-AA-3506-01 4 114158257 114158257 G A ANK2 Missense_Mutation p.A200T 0.36 probably_damaging(0.999) TCGA-AA-3506-01 4 123193537 123193537 T G KIAA1109 Missense_Mutation p.F2808C 0.24 probably_damaging(0.997) TCGA-AA-3506-01 4 155749305 155749305 G A RBM46 3'UTR 0.12 TCGA-AA-3506-01 4 156137652 156137652 G T NPY2R 3'UTR 0.35 TCGA-AA-3506-01 4 87622701 87622701 T C PTPN13 Silent p.S314S 0.26 TCGA-AA-3506-01 5 112164586 112164586 C T APC Nonsense_Mutation p.R554* 0.28 TCGA-AA-3506-01 5 112175676 112175677 AG - APC Frame_Shift_Del p.S1465Wfs*3 0.24 TCGA-AA-3506-01 5 140167575 140167575 C T PCDHA1 Missense_Mutation p.A567V 0.29 tolerated_low_confidence(0.15) benign(0.013) TCGA-AA-3506-01 5 140176779 140176779 G A PCDHA2 Missense_Mutation p.A744T 0.38 tolerated_low_confidence(0.08) benign(0.092) TCGA-AA-3506-01 5 140230059 140230059 C T PCDHA9 Missense_Mutation p.T660M 0.37 deleterious_low_confidence(0.05) benign(0.432) TCGA-AA-3506-01 5 140474308 140474308 C T PCDHB2 5'UTR 0.26 TCGA-AA-3506-01 5 140627366 140627366 C T PCDHB15 Silent p.S740S 0.32 TCGA-AA-3506-01 5 140772861 140772861 G C PCDHGA8 Missense_Mutation p.D161H 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3506-01 5 140811012 140811012 G A PCDHGA12 Missense_Mutation p.R229H 0.27 tolerated_low_confidence(0.4) benign(0.071) TCGA-AA-3506-01 5 140870967 140870967 C T PCDHGC5 Silent p.N720N 0.34 TCGA-AA-3506-01 5 149265891 149265891 A C PDE6A Missense_Mutation p.M592R 0.33 deleterious(0) probably_damaging(0.978) TCGA-AA-3506-01 5 161300147 161300147 C T GABRA1 Missense_Mutation p.R94C 0.24 deleterious(0) possibly_damaging(0.871) TCGA-AA-3506-01 5 167642084 167642084 C T TENM2 Silent p.P1295P 0.39 TCGA-AA-3506-01 5 168114031 168114031 G A SLIT3 Silent p.C1089C 0.30 TCGA-AA-3506-01 5 26903796 26903796 C T CDH9 Missense_Mutation p.D317N 0.29 tolerated(0.16) benign(0.126) TCGA-AA-3506-01 5 37014831 37014831 G A NIPBL Missense_Mutation p.R1536Q 0.32 deleterious(0.01) possibly_damaging(0.895) TCGA-AA-3506-01 6 129573352 129573352 C G LAMA2 Missense_Mutation p.R670G 0.24 tolerated(0.07) benign(0.03) TCGA-AA-3506-01 6 152129110 152129110 C T ESR1 Silent p.N21N 0.28 TCGA-AA-3506-01 6 152589260 152589260 C G SYNE1 Missense_Mutation p.R6249P 0.33 possibly_damaging(0.586) TCGA-AA-3506-01 6 24596552 24596552 C T KIAA0319 Missense_Mutation p.G117E 0.36 tolerated(0.12) benign(0.098) TCGA-AA-3506-01 6 33661441 33661442 GA - ITPR3 Frame_Shift_Del p.D2582Lfs*5 0.23 TCGA-AA-3506-01 6 36990080 36990080 C A FGD2 Nonsense_Mutation p.C464* 0.34 TCGA-AA-3506-01 6 53516357 53516357 A G KLHL31 3'UTR 0.27 TCGA-AA-3506-01 6 56334935 56334935 G A DST Silent p.I4866I 0.27 TCGA-AA-3506-01 6 88224186 88224186 G T RARS2 Missense_Mutation p.S561Y 0.27 tolerated(0.86) benign(0.03) TCGA-AA-3506-01 7 100285458 100285458 C T GIGYF1 Missense_Mutation p.E72K 0.27 deleterious(0.04) unknown(0) TCGA-AA-3506-01 7 121738840 121738840 A G AASS Missense_Mutation p.L496S 0.24 deleterious(0) possibly_damaging(0.533) TCGA-AA-3506-01 7 127255571 127255571 T C PAX4 Missense_Mutation p.N2D 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3506-01 7 143053609 143053609 G A FAM131B 3'UTR 0.32 TCGA-AA-3506-01 7 147336256 147336256 C G CNTNAP2 Silent p.G652G 0.25 TCGA-AA-3506-01 7 147869400 147869400 T G CNTNAP2 Missense_Mutation p.L947R 0.19 deleterious(0) probably_damaging(0.986) TCGA-AA-3506-01 7 2770782 2770782 G T GNA12 3'UTR 0.31 TCGA-AA-3506-01 7 45931645 45931645 T C IGFBP1 Missense_Mutation p.Y212H 0.18 deleterious(0) probably_damaging(0.998) TCGA-AA-3506-01 7 53103786 53103786 T G POM121L12 Missense_Mutation p.I141S 0.22 deleterious(0) possibly_damaging(0.702) TCGA-AA-3506-01 7 75915205 75915205 C T SRRM3 3'UTR 0.17 TCGA-AA-3506-01 8 12285199 12285199 G A FAM86B2 Missense_Mutation p.P287S 0.32 deleterious(0.01) possibly_damaging(0.524) TCGA-AA-3506-01 8 36780014 36780014 C A KCNU1 Missense_Mutation p.P868H 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-AA-3506-01 9 106880509 106880509 C T SMC2 Nonsense_Mutation p.Q617* 0.27 TCGA-AA-3506-01 9 117063988 117063988 C A COL27A1 Silent p.P1612P 0.34 TCGA-AA-3506-01 9 131811773 131811773 G T FAM73B Missense_Mutation p.M178I 0.33 tolerated(0.22) benign(0.001) TCGA-AA-3506-01 9 14851561 14851561 C T FREM1 Silent p.P291P 0.30 TCGA-AA-3506-01 9 27047370 27047370 G A IFT74 Splice_Site p.X402_splice 0.32 TCGA-AA-3506-01 9 34256894 34256894 G A KIF24 Missense_Mutation p.A904V 0.32 deleterious(0.03) benign(0.18) TCGA-AA-3506-01 9 34489432 34489432 G A DNAI1 Missense_Mutation p.D125N 0.34 tolerated(0.49) benign(0.001) TCGA-AA-3506-01 9 34564755 34564755 G A CNTFR Missense_Mutation p.A54V 0.33 tolerated(0.24) benign(0.407) TCGA-AA-3506-01 9 84605871 84605871 G A SPATA31D1 Silent p.S162S 0.29 TCGA-AA-3506-01 X 102335139 102335139 G C NXF3 Silent p.G311G 0.69 TCGA-AA-3506-01 X 102755746 102755746 G A RAB40A 5'UTR 0.68 TCGA-AA-3506-01 X 1407701 1407701 G A CSF2RA Silent p.A131A 0.39 TCGA-AA-3506-01 X 34150215 34150215 C T FAM47A Missense_Mutation p.G61S 0.39 deleterious(0.02) benign(0.249) TCGA-AA-3506-01 X 63411754 63411754 A C AMER1 Nonsense_Mutation p.Y471* 0.73 TCGA-AA-3506-01 X 8433476 8433476 C T VCX3B 5'UTR 0.09 TCGA-AA-3506-01 X 88009701 88009701 A G CPXCR1 3'UTR 0.69 TCGA-AA-3506-01 Y 16952979 16952979 C T NLGN4Y Missense_Mutation p.T763M 0.66 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-3510-01 10 100995288 100995288 C T HPSE2 Missense_Mutation p.G91D 0.33 tolerated(0.56) probably_damaging(0.987) TCGA-AA-3510-01 10 101148018 101148018 G A CNNM1 Silent p.Q878Q 0.45 TCGA-AA-3510-01 10 101157229 101157229 A G GOT1 3'UTR 0.10 TCGA-AA-3510-01 10 101163491 101163491 G A GOT1 Silent p.F261F 0.32 TCGA-AA-3510-01 10 101373553 101373553 G A SLC25A28 Silent p.G140G 0.48 TCGA-AA-3510-01 10 101923794 101923794 C A ERLIN1 Nonsense_Mutation p.E208* 0.34 TCGA-AA-3510-01 10 101981886 101981886 G T CHUK Missense_Mutation p.S123Y 0.27 deleterious(0.04) probably_damaging(0.968) TCGA-AA-3510-01 10 101982694 101982694 C A CHUK Nonsense_Mutation p.E82* 0.33 TCGA-AA-3510-01 10 102824666 102824666 G A KAZALD1 Missense_Mutation p.D302N 0.21 deleterious(0.02) probably_damaging(0.926) TCGA-AA-3510-01 10 104595073 104595073 C T CYP17A1 Missense_Mutation p.R125Q 0.45 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 10 104849293 104849293 C A NT5C2 3'UTR 0.27 TCGA-AA-3510-01 10 104851364 104851364 C T NT5C2 Missense_Mutation p.E390K 0.40 tolerated(0.08) benign(0.141) TCGA-AA-3510-01 10 104852955 104852955 C T NT5C2 Missense_Mutation p.R367Q 0.09 deleterious(0.04) possibly_damaging(0.746) TCGA-AA-3510-01 10 105218190 105218190 C T CALHM1 Missense_Mutation p.A107T 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 10 105763109 105763109 G T SLK Nonsense_Mutation p.E725* 0.18 TCGA-AA-3510-01 10 105831820 105831820 G A COL17A1 Nonsense_Mutation p.R145* 0.40 TCGA-AA-3510-01 10 1058522 1058522 C T GTPBP4 Nonsense_Mutation p.R488* 0.41 TCGA-AA-3510-01 10 106899245 106899245 G A SORCS3 Splice_Site p.X434_splice 0.30 TCGA-AA-3510-01 10 108371699 108371699 G A SORCS1 Silent p.I1001I 0.40 TCGA-AA-3510-01 10 11047382 11047382 G T RP1-251M9.3 3'Flank 0.35 TCGA-AA-3510-01 10 112645067 112645067 G T PDCD4 Missense_Mutation p.K166N 0.22 tolerated(0.05) benign(0.22) TCGA-AA-3510-01 10 11505690 11505690 C T USP6NL Missense_Mutation p.E430K 0.31 tolerated(0.07) benign(0.28) TCGA-AA-3510-01 10 115334047 115334047 G A HABP2 Splice_Site p.X36_splice 0.28 TCGA-AA-3510-01 10 115364457 115364457 C T NRAP Missense_Mutation p.D1380N 0.38 tolerated(0.66) benign(0.056) TCGA-AA-3510-01 10 115657963 115657963 G T NHLRC2 Missense_Mutation p.K378N 0.28 deleterious(0) possibly_damaging(0.677) TCGA-AA-3510-01 10 115662229 115662229 G T NHLRC2 Splice_Site p.X458_splice 0.18 TCGA-AA-3510-01 10 115885857 115885857 G T C10orf118 Missense_Mutation p.Q801K 0.29 deleterious(0.01) benign(0.3) TCGA-AA-3510-01 10 118427829 118427829 C T C10orf82 5'UTR 0.37 TCGA-AA-3510-01 10 120094918 120094918 C A FAM204A Nonsense_Mutation p.E115* 0.20 TCGA-AA-3510-01 10 120450813 120450813 T G CACUL1 Missense_Mutation p.K330T 0.26 deleterious(0) possibly_damaging(0.858) TCGA-AA-3510-01 10 120793411 120793411 C A NANOS1 3'UTR 0.14 TCGA-AA-3510-01 10 121285603 121285603 C A RGS10 Nonsense_Mutation p.E66* 0.24 TCGA-AA-3510-01 10 121429544 121429544 G A BAG3 Missense_Mutation p.R121Q 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-AA-3510-01 10 121675363 121675363 G A SEC23IP Nonsense_Mutation p.W502* 0.42 TCGA-AA-3510-01 10 123258033 123258033 G T FGFR2 Missense_Mutation p.L551I 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3510-01 10 123661963 123661963 T G ATE1 Missense_Mutation p.K252N 0.32 deleterious(0) probably_damaging(0.976) TCGA-AA-3510-01 10 124009081 124009081 G T TACC2 Missense_Mutation p.V2895F 0.21 probably_damaging(0.996) TCGA-AA-3510-01 10 124402799 124402799 G A DMBT1 Missense_Mutation p.R2376Q 0.28 tolerated(0.37) probably_damaging(0.988) TCGA-AA-3510-01 10 125780896 125780896 G A CHST15 Missense_Mutation p.S408L 0.27 deleterious(0.02) benign(0.046) TCGA-AA-3510-01 10 125805555 125805555 G A CHST15 Silent p.L58L 0.28 TCGA-AA-3510-01 10 126138462 126138462 C A NKX1-2 Missense_Mutation p.K17N 0.22 deleterious(0) possibly_damaging(0.788) TCGA-AA-3510-01 10 126727573 126727573 A G CTBP2 Silent p.I17I 0.12 TCGA-AA-3510-01 10 127456246 127456246 T C MMP21 Missense_Mutation p.D422G 0.42 deleterious(0.05) benign(0.049) TCGA-AA-3510-01 10 1279750 1279750 G A ADARB2 Missense_Mutation p.R467W 0.36 deleterious(0.01) probably_damaging(0.959) TCGA-AA-3510-01 10 128147752 128147752 G T C10orf90 Missense_Mutation p.S585Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 10 128192675 128192675 G T C10orf90 Missense_Mutation p.S365Y 0.27 tolerated(0.14) benign(0.406) TCGA-AA-3510-01 10 129899691 129899691 G A MKI67 Missense_Mutation p.A3179V 0.36 tolerated(1) benign(0) TCGA-AA-3510-01 10 134006168 134006168 C T DPYSL4 Silent p.I45I 0.22 TCGA-AA-3510-01 10 134015479 134015479 C T DPYSL4 Silent p.F380F 0.34 TCGA-AA-3510-01 10 135015105 135015105 C T KNDC1 Silent p.F1030F 0.37 TCGA-AA-3510-01 10 135032400 135032400 C T KNDC1 Silent p.F1581F 0.16 TCGA-AA-3510-01 10 135087519 135087519 G A ADAM8 Missense_Mutation p.S81F 0.41 deleterious(0) possibly_damaging(0.865) TCGA-AA-3510-01 10 135345220 135345220 G A CYP2E1 Missense_Mutation p.A157T 0.40 deleterious(0.03) possibly_damaging(0.603) TCGA-AA-3510-01 10 135352394 135352394 G A CYP2E1 Missense_Mutation p.D470N 0.34 tolerated(0.09) probably_damaging(1) TCGA-AA-3510-01 10 135438730 135438730 G A FRG2B Missense_Mutation p.A237V 0.12 deleterious(0.01) benign(0.133) TCGA-AA-3510-01 10 16526342 16526342 G T PTER 5'UTR 0.22 TCGA-AA-3510-01 10 16526357 16526357 G T PTER 5'UTR 0.41 TCGA-AA-3510-01 10 17746972 17746972 T G STAM Missense_Mutation p.M335R 0.09 tolerated(0.42) benign(0) TCGA-AA-3510-01 10 18276412 18276412 C T SLC39A12 Silent p.Y367Y 0.38 TCGA-AA-3510-01 10 18837103 18837103 C T NSUN6 Missense_Mutation p.E379K 0.11 deleterious(0) probably_damaging(0.989) TCGA-AA-3510-01 10 19787531 19787531 G T MALRD1 Missense_Mutation p.R1138I 0.13 tolerated(0.07) benign(0.012) TCGA-AA-3510-01 10 20465997 20465997 C T PLXDC2 Missense_Mutation p.S318L 0.25 deleterious(0) benign(0.217) TCGA-AA-3510-01 10 21074652 21074652 A C NEBL 3'UTR 0.28 TCGA-AA-3510-01 10 22609071 22609071 A G COMMD3 3'UTR 0.31 TCGA-AA-3510-01 10 23482650 23482650 G A PTF1A Missense_Mutation p.D268N 0.32 deleterious(0.04) unknown(0) TCGA-AA-3510-01 10 23730442 23730442 G A OTUD1 3'UTR 0.36 TCGA-AA-3510-01 10 23730677 23730677 G T OTUD1 3'UTR 0.06 TCGA-AA-3510-01 10 24873462 24873462 T G ARHGAP21 Missense_Mutation p.D1919A 0.33 deleterious(0.01) benign(0.341) TCGA-AA-3510-01 10 24874440 24874440 G A ARHGAP21 Missense_Mutation p.A1593V 0.24 tolerated(0.08) benign(0.004) TCGA-AA-3510-01 10 24874763 24874763 C T ARHGAP21 Silent p.T1485T 0.35 TCGA-AA-3510-01 10 25284784 25284784 G A ENKUR Missense_Mutation p.R80W 0.36 tolerated(0.15) benign(0.004) TCGA-AA-3510-01 10 25312556 25312556 A C THNSL1 Missense_Mutation p.N135T 0.34 deleterious(0.04) benign(0.2) TCGA-AA-3510-01 10 26385558 26385558 T C MYO3A Missense_Mutation p.S575P 0.39 tolerated(0.05) benign(0.063) TCGA-AA-3510-01 10 26417340 26417340 G T MYO3A Missense_Mutation p.S712I 0.27 deleterious(0.01) benign(0.071) TCGA-AA-3510-01 10 26802505 26802505 C A APBB1IP Silent p.V243V 0.39 TCGA-AA-3510-01 10 27412547 27412547 T C YME1L1 Missense_Mutation p.Y401C 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 10 27538846 27538846 C T RP11-85G18.6 Intron 0.26 TCGA-AA-3510-01 10 28270406 28270406 T C ARMC4 Missense_Mutation p.M309V 0.41 tolerated(0.32) benign(0.009) TCGA-AA-3510-01 10 28342982 28342982 A C MPP7 3'UTR 0.39 TCGA-AA-3510-01 10 31810254 31810254 C A ZEB1 Missense_Mutation p.S665Y 0.12 deleterious(0) benign(0.418) TCGA-AA-3510-01 10 33559678 33559678 G T NRP1 Missense_Mutation p.L119I 0.33 tolerated(0.11) benign(0.375) TCGA-AA-3510-01 10 34606112 34606112 C A PARD3 Missense_Mutation p.K999N 0.30 tolerated(0.1) possibly_damaging(0.821) TCGA-AA-3510-01 10 34673075 34673075 C T PARD3 Missense_Mutation p.R333Q 0.27 tolerated(0.13) probably_damaging(0.98) TCGA-AA-3510-01 10 35500614 35500614 G T CREM Missense_Mutation p.K262N 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 10 37447450 37447450 C T ANKRD30A Silent p.C556C 0.07 TCGA-AA-3510-01 10 37490201 37490201 A G ANKRD30A Silent p.V883V 0.24 TCGA-AA-3510-01 10 38241492 38241492 T G ZNF25 Missense_Mutation p.K312Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 10 38343447 38343447 C A ZNF33A Missense_Mutation p.S132Y 0.09 tolerated(0.65) benign(0.015) TCGA-AA-3510-01 10 42833450 42833450 T G RP11-313J2.1 RNA 0.23 TCGA-AA-3510-01 10 42916341 42916341 C T CCNYL2 RNA 0.34 TCGA-AA-3510-01 10 43281027 43281027 A C BMS1 Missense_Mutation p.K92Q 0.08 tolerated(0.07) probably_damaging(0.999) TCGA-AA-3510-01 10 43693601 43693601 C T RASGEF1A Missense_Mutation p.A359T 0.27 tolerated(0.34) benign(0.124) TCGA-AA-3510-01 10 43869185 43869185 G A FXYD4 5'UTR 0.57 TCGA-AA-3510-01 10 45499956 45499956 T C ZNF22 3'UTR 0.34 TCGA-AA-3510-01 10 45941115 45941115 C T ALOX5 Missense_Mutation p.P669S 0.30 tolerated(0.06) probably_damaging(0.991) TCGA-AA-3510-01 10 46967469 46967469 C T SYT15 Missense_Mutation p.R203H 0.10 tolerated(0.19) benign(0.02) TCGA-AA-3510-01 10 48390628 48390628 C T RBP3 Missense_Mutation p.D84N 0.31 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 10 48438441 48438441 G A GDF10 Silent p.G90G 0.19 TCGA-AA-3510-01 10 49392620 49392620 G A FRMPD2 Missense_Mutation p.S858F 0.31 deleterious(0) probably_damaging(0.976) TCGA-AA-3510-01 10 49654610 49654610 C A ARHGAP22 Nonsense_Mutation p.E657* 0.08 TCGA-AA-3510-01 10 49654636 49654636 C T ARHGAP22 Missense_Mutation p.R648K 0.32 tolerated(0.43) benign(0.024) TCGA-AA-3510-01 10 49986727 49986727 G A WDFY4 Missense_Mutation p.A1083T 0.38 tolerated(0.7) benign(0.001) TCGA-AA-3510-01 10 50081680 50081680 C T WDFY4 Nonsense_Mutation p.R2296* 0.31 TCGA-AA-3510-01 10 5014459 5014459 C T AKR1C1 Silent p.L213L 0.06 TCGA-AA-3510-01 10 50342047 50342047 C T FAM170B 5'UTR 0.39 TCGA-AA-3510-01 10 50373831 50373831 C T C10orf128 Silent p.P83P 0.45 TCGA-AA-3510-01 10 50725028 50725028 C A ERCC6-PGBD3 Nonsense_Mutation p.E513* 0.23 TCGA-AA-3510-01 10 51465325 51465325 C A AGAP7 Missense_Mutation p.K377N 0.07 deleterious(0.02) probably_damaging(0.969) TCGA-AA-3510-01 10 51465445 51465445 G A AGAP7 Silent p.S337S 0.20 TCGA-AA-3510-01 10 54076460 54076460 G T DKK1 Nonsense_Mutation p.E232* 0.46 TCGA-AA-3510-01 10 54528134 54528134 C A MBL2 Missense_Mutation p.E170D 0.10 deleterious(0) probably_damaging(0.989) TCGA-AA-3510-01 10 5541215 5541215 C T CALML5 Missense_Mutation p.E63K 0.10 tolerated(0.07) benign(0.053) TCGA-AA-3510-01 10 55912864 55912864 G A PCDH15 Nonsense_Mutation p.R594* 0.29 TCGA-AA-3510-01 10 56424016 56424016 G A PCDH15 Nonsense_Mutation p.R3* 0.33 TCGA-AA-3510-01 10 5777365 5777365 G A FAM208B Missense_Mutation p.A435T 0.30 tolerated(0.39) benign(0.015) TCGA-AA-3510-01 10 5791905 5791905 G T FAM208B Missense_Mutation p.R2174I 0.20 deleterious(0.01) benign(0.101) TCGA-AA-3510-01 10 6066252 6066252 C A IL2RA Nonsense_Mutation p.E108* 0.09 TCGA-AA-3510-01 10 61112138 61112138 C T FAM13C Silent p.A72A 0.30 TCGA-AA-3510-01 10 61574411 61574411 G A CCDC6 Nonsense_Mutation p.R229* 0.34 TCGA-AA-3510-01 10 61719306 61719306 A G C10orf40 Intron 0.33 TCGA-AA-3510-01 10 61819686 61819686 T C ANK3 Intron 0.18 TCGA-AA-3510-01 10 61823980 61823980 G T ANK3 Missense_Mutation p.S4129Y 0.32 probably_damaging(0.996) TCGA-AA-3510-01 10 61830185 61830185 G T ANK3 Missense_Mutation p.S3485Y 0.32 benign(0.121) TCGA-AA-3510-01 10 61830619 61830619 G A ANK3 Silent p.D3340D 0.33 TCGA-AA-3510-01 10 61835555 61835555 G A ANK3 Missense_Mutation p.T1695I 0.13 benign(0.018) TCGA-AA-3510-01 10 64239664 64239664 G A ZNF365 Intron 0.44 TCGA-AA-3510-01 10 64968550 64968550 C A JMJD1C Missense_Mutation p.R960I 0.27 deleterious(0) possibly_damaging(0.655) TCGA-AA-3510-01 10 70098430 70098430 A C HNRNPH3 Missense_Mutation p.D141A 0.32 tolerated(0.59) benign(0) TCGA-AA-3510-01 10 70482214 70482214 C T CCAR1 Intron 0.32 TCGA-AA-3510-01 10 70509297 70509297 G T CCAR1 Nonsense_Mutation p.E325* 0.37 TCGA-AA-3510-01 10 70645254 70645254 G T STOX1 Missense_Mutation p.D568Y 0.36 deleterious(0.01) benign(0.169) TCGA-AA-3510-01 10 70666567 70666567 A C DDX50 Missense_Mutation p.K63T 0.32 deleterious_low_confidence(0.03) benign(0.366) TCGA-AA-3510-01 10 70696829 70696829 G A DDX50 Missense_Mutation p.R578Q 0.33 deleterious(0.02) possibly_damaging(0.754) TCGA-AA-3510-01 10 71020953 71020953 G A HKDC1 Missense_Mutation p.D759N 0.46 tolerated(0.16) benign(0.067) TCGA-AA-3510-01 10 7218128 7218128 C A SFMBT2 Splice_Site p.X603_splice 0.40 TCGA-AA-3510-01 10 73565969 73565969 G A CDH23 Silent p.E463E 0.44 TCGA-AA-3510-01 10 73588795 73588795 C T PSAP Missense_Mutation p.E139K 0.39 tolerated(0.5) benign(0.001) TCGA-AA-3510-01 10 75051170 75051170 G A TTC18 Nonsense_Mutation p.R755* 0.29 TCGA-AA-3510-01 10 75276419 75276419 C T USP54 Silent p.G1255G 0.36 TCGA-AA-3510-01 10 75567378 75567378 G T NDST2 Missense_Mutation p.L257I 0.39 tolerated(0.35) benign(0.01) TCGA-AA-3510-01 10 75672058 75672058 C T PLAU Silent p.F57F 0.39 TCGA-AA-3510-01 10 75673383 75673383 G T PLAU Nonsense_Mutation p.E183* 0.31 TCGA-AA-3510-01 10 7658002 7658002 C A ITIH5 Missense_Mutation p.K294N 0.32 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 10 76719784 76719784 T G KAT6B Missense_Mutation p.N226K 0.32 probably_damaging(0.999) TCGA-AA-3510-01 10 76735302 76735302 G A KAT6B Missense_Mutation p.D403N 0.40 possibly_damaging(0.728) TCGA-AA-3510-01 10 7759658 7759658 C T ITIH2 Silent p.F179F 0.28 TCGA-AA-3510-01 10 7801947 7801947 C A KIN Missense_Mutation p.R342I 0.30 tolerated(0.19) benign(0) TCGA-AA-3510-01 10 78647231 78647231 C T KCNMA1 Silent p.P1151P 0.24 TCGA-AA-3510-01 10 79745903 79745903 G T POLR3A Missense_Mutation p.F972L 0.09 deleterious(0.02) possibly_damaging(0.6) TCGA-AA-3510-01 10 8115875 8115875 G A GATA3 Silent p.S408S 0.11 TCGA-AA-3510-01 10 81274707 81274707 T C EIF5AL1 3'UTR 0.23 TCGA-AA-3510-01 10 81697938 81697938 C A SFTPD Missense_Mutation p.K266N 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-AA-3510-01 10 82126697 82126697 C A DYDC2 Missense_Mutation p.S189Y 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-AA-3510-01 10 83635416 83635416 G A NRG3 Missense_Mutation p.G107E 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3510-01 10 87614322 87614322 C T GRID1 Silent p.S388S 0.29 TCGA-AA-3510-01 10 87898623 87898623 C T GRID1 Missense_Mutation p.A227T 0.41 tolerated(0.12) probably_damaging(0.997) TCGA-AA-3510-01 10 88260327 88260327 T G WAPAL Missense_Mutation p.I225L 0.31 tolerated_low_confidence(0.68) benign(0.001) TCGA-AA-3510-01 10 88417907 88417907 C T OPN4 Missense_Mutation p.L148F 0.34 deleterious(0) possibly_damaging(0.802) TCGA-AA-3510-01 10 88423484 88423484 C T OPN4 Silent p.Y452Y 0.37 TCGA-AA-3510-01 10 88477859 88477859 C A LDB3 Missense_Mutation p.F610L 0.32 deleterious(0) probably_damaging(0.966) TCGA-AA-3510-01 10 88485932 88485932 G A LDB3 Missense_Mutation p.D678N 0.26 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 10 88683246 88683246 C T BMPR1A Missense_Mutation p.R486W 0.39 tolerated(0.08) probably_damaging(1) TCGA-AA-3510-01 10 88780112 88780112 G A FAM25A Missense_Mutation p.E11K 0.16 tolerated_low_confidence(0.07) unknown(0) TCGA-AA-3510-01 10 90983569 90983569 C A LIPA Nonsense_Mutation p.E232* 0.11 TCGA-AA-3510-01 10 91007391 91007391 G T LIPA Missense_Mutation p.F5L 0.41 tolerated(1) benign(0) TCGA-AA-3510-01 10 91007403 91007403 C A LIPA Translation_Start_Site p.M1? 0.18 tolerated_low_confidence(0.08) benign(0.003) TCGA-AA-3510-01 10 91143080 91143080 G T IFIT1B Nonsense_Mutation p.E4* 0.38 TCGA-AA-3510-01 10 93588070 93588070 A C TNKS2 Missense_Mutation p.Q337H 0.12 tolerated(0.17) probably_damaging(0.996) TCGA-AA-3510-01 10 93615386 93615386 C T TNKS2 Nonsense_Mutation p.R977* 0.07 TCGA-AA-3510-01 10 93711190 93711190 G A BTAF1 Missense_Mutation p.R144H 0.33 deleterious(0.03) benign(0.043) TCGA-AA-3510-01 10 94353137 94353137 C T KIF11 Missense_Mutation p.A2V 0.37 deleterious(0) possibly_damaging(0.82) TCGA-AA-3510-01 10 94712093 94712093 G T EXOC6 Nonsense_Mutation p.E494* 0.31 TCGA-AA-3510-01 10 95079655 95079655 C T MYOF Missense_Mutation p.E1858K 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 10 95103648 95103648 C T MYOF Missense_Mutation p.E1431K 0.10 deleterious(0.03) benign(0.21) TCGA-AA-3510-01 10 95216684 95216684 C A MYOF Missense_Mutation p.K33N 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 10 95347338 95347338 G T FFAR4 Missense_Mutation p.R369I 0.25 deleterious(0) possibly_damaging(0.775) TCGA-AA-3510-01 10 95557360 95557360 C A LGI1 Missense_Mutation p.L492I 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 10 95718450 95718450 A T PIPSL RNA 0.46 TCGA-AA-3510-01 10 96039731 96039731 C A PLCE1 Intron 0.23 TCGA-AA-3510-01 10 96084968 96084968 C T PLCE1 Intron 0.39 TCGA-AA-3510-01 10 96106235 96106235 T G NOC3L Missense_Mutation p.K446Q 0.29 deleterious(0.01) possibly_damaging(0.594) TCGA-AA-3510-01 10 97602207 97602207 G T ENTPD1 Missense_Mutation p.E135D 0.32 tolerated(0.08) benign(0.149) TCGA-AA-3510-01 10 97778944 97778944 C T CC2D2B Intron 0.29 TCGA-AA-3510-01 10 98088546 98088546 G T DNTT Nonsense_Mutation p.E358* 0.18 TCGA-AA-3510-01 10 98133546 98133546 G A TLL2 Silent p.I823I 0.40 TCGA-AA-3510-01 10 99371420 99371420 C A HOGA1 3'UTR 0.31 TCGA-AA-3510-01 10 99994206 99994206 G A R3HCC1L Silent p.K655K 0.36 TCGA-AA-3510-01 11 100864384 100864384 C T TMEM133 3'UTR 0.28 TCGA-AA-3510-01 11 100909804 100909804 G T PGR 3'UTR 0.24 TCGA-AA-3510-01 11 101765793 101765793 C A ANGPTL5 Nonsense_Mutation p.E222* 0.31 TCGA-AA-3510-01 11 102479796 102479796 A C MMP20 Missense_Mutation p.F228C 0.45 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 11 102482500 102482500 G T MMP20 Missense_Mutation p.S170Y 0.42 deleterious(0.02) probably_damaging(0.986) TCGA-AA-3510-01 11 102584061 102584061 G A MMP8 3'UTR 0.30 TCGA-AA-3510-01 11 102586115 102586115 G T MMP8 Missense_Mutation p.S319Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 11 1025865 1025865 C A MUC6 Missense_Mutation p.E913D 0.38 unknown(0) TCGA-AA-3510-01 11 102702887 102702887 G A MMP3 3'Flank 0.18 TCGA-AA-3510-01 11 102825296 102825296 G A MMP13 Silent p.V134V 0.18 TCGA-AA-3510-01 11 1030690 1030690 C A MUC6 Missense_Mutation p.A259S 0.26 unknown(0) TCGA-AA-3510-01 11 10327267 10327267 C T ADM Missense_Mutation p.A7V 0.23 deleterious(0.02) benign(0.443) TCGA-AA-3510-01 11 103909428 103909428 C A DDI1 3'UTR 0.14 TCGA-AA-3510-01 11 104874036 104874036 C A CASP5 Nonsense_Mutation p.E183* 0.21 TCGA-AA-3510-01 11 105732883 105732883 G A GRIA4 Silent p.K207K 0.31 TCGA-AA-3510-01 11 105789630 105789630 G T GRIA4 Nonsense_Mutation p.E488* 0.18 TCGA-AA-3510-01 11 105795133 105795133 G T GRIA4 Missense_Mutation p.E495D 0.37 tolerated(1) benign(0.003) TCGA-AA-3510-01 11 10647569 10647569 C A MRVI1 Missense_Mutation p.D438Y 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 11 106558469 106558469 C T GUCY1A2 Missense_Mutation p.E700K 0.37 tolerated(0.35) benign(0.064) TCGA-AA-3510-01 11 10673776 10673776 C T MRVI1 Intron 0.21 TCGA-AA-3510-01 11 108142000 108142000 C T ATM Missense_Mutation p.R982C 0.29 deleterious(0) possibly_damaging(0.893) TCGA-AA-3510-01 11 108253802 108253802 A C C11orf65 Silent p.V296V 0.13 TCGA-AA-3510-01 11 108263963 108263963 T G C11orf65 Missense_Mutation p.N235H 0.08 deleterious(0.03) benign(0.052) TCGA-AA-3510-01 11 108345649 108345649 C T KDELC2 Missense_Mutation p.E477K 0.38 tolerated(0.96) benign(0.013) TCGA-AA-3510-01 11 1101611 1101611 G A MUC2 Missense_Mutation p.E2542K 0.40 unknown(0) TCGA-AA-3510-01 11 111168672 111168672 C A COLCA1 5'UTR 0.24 TCGA-AA-3510-01 11 111612831 111612831 A G PPP2R1B Silent p.L579L 0.29 TCGA-AA-3510-01 11 111746627 111746627 T G FDXACB1 Silent p.S298S 0.19 TCGA-AA-3510-01 11 111922036 111922036 G A DLAT Missense_Mutation p.E493K 0.35 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 11 112085567 112085567 G A BCO2 Missense_Mutation p.R472Q 0.35 tolerated(0.7) benign(0.004) TCGA-AA-3510-01 11 113078701 113078701 C T NCAM1 Missense_Mutation p.A357V 0.33 tolerated(0.06) possibly_damaging(0.499) TCGA-AA-3510-01 11 113196305 113196305 C T TTC12 Missense_Mutation p.R128C 0.27 tolerated(0.19) benign(0.001) TCGA-AA-3510-01 11 113561030 113561030 A C TMPRSS5 Missense_Mutation p.S377A 0.10 tolerated(0.05) probably_damaging(0.987) TCGA-AA-3510-01 11 113570378 113570378 G A TMPRSS5 Silent p.G48G 0.37 TCGA-AA-3510-01 11 113673918 113673918 C A USP28 Nonsense_Mutation p.E942* 0.37 TCGA-AA-3510-01 11 113688554 113688554 A G USP28 Missense_Mutation p.V430A 0.34 deleterious(0.04) benign(0.403) TCGA-AA-3510-01 11 113704982 113704982 G A USP28 Nonsense_Mutation p.R204* 0.18 TCGA-AA-3510-01 11 11374246 11374246 G A CSNK2A3 Silent p.L141L 0.33 TCGA-AA-3510-01 11 113779975 113779975 C T HTR3B Intron 0.26 TCGA-AA-3510-01 11 114183020 114183020 A C NNMT Missense_Mutation p.I206L 0.32 deleterious(0.01) benign(0.044) TCGA-AA-3510-01 11 114270880 114270880 T C C11orf71 Silent p.R58R 0.35 TCGA-AA-3510-01 11 115047109 115047109 G A CADM1 3'UTR 0.26 TCGA-AA-3510-01 11 115102168 115102168 G A CADM1 Missense_Mutation p.A156V 0.31 tolerated(0.97) benign(0.117) TCGA-AA-3510-01 11 115111052 115111052 G T CADM1 Missense_Mutation p.D71E 0.18 tolerated(0.06) possibly_damaging(0.449) TCGA-AA-3510-01 11 115111100 115111100 G A CADM1 Silent p.I55I 0.35 TCGA-AA-3510-01 11 117059507 117059507 G A SIDT2 Missense_Mutation p.D415N 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 11 117064643 117064643 G A SIDT2 Silent p.A762A 0.23 TCGA-AA-3510-01 11 117710750 117710750 A G FXYD6 Intron 0.50 TCGA-AA-3510-01 11 118074146 118074146 G A AMICA1 Nonsense_Mutation p.R257* 0.44 TCGA-AA-3510-01 11 118183553 118183553 G A CD3E Silent p.A108A 0.09 TCGA-AA-3510-01 11 118373178 118373178 C T KMT2A Nonsense_Mutation p.R2191* 0.40 TCGA-AA-3510-01 11 118374757 118374757 T G KMT2A Missense_Mutation p.I2717S 0.26 probably_damaging(0.993) TCGA-AA-3510-01 11 118415643 118415643 T G IFT46 Missense_Mutation p.L352F 0.12 deleterious_low_confidence(0.02) benign(0.324) TCGA-AA-3510-01 11 118532669 118532669 G A TREH Missense_Mutation p.R152W 0.39 tolerated(0.16) benign(0.024) TCGA-AA-3510-01 11 118997750 118997750 C A HINFP Missense_Mutation p.F32L 0.33 tolerated(0.19) probably_damaging(0.925) TCGA-AA-3510-01 11 119103378 119103378 G T CBL Missense_Mutation p.R139I 0.20 deleterious(0) probably_damaging(0.937) TCGA-AA-3510-01 11 119144604 119144604 G A CBL Missense_Mutation p.R206Q 0.32 tolerated(0.09) probably_damaging(0.984) TCGA-AA-3510-01 11 119180610 119180610 C T MCAM Missense_Mutation p.D643N 0.13 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 11 119207586 119207586 T C RNF26 3'UTR 0.31 TCGA-AA-3510-01 11 119215346 119215346 G A MFRP Silent p.F298F 0.33 TCGA-AA-3510-01 11 120776030 120776030 A C GRIK4 Missense_Mutation p.H435P 0.46 tolerated(0.18) probably_damaging(0.913) TCGA-AA-3510-01 11 121058676 121058676 C T TECTA Silent p.C2045C 0.54 TCGA-AA-3510-01 11 121461546 121461546 T C SORL1 Intron 0.42 TCGA-AA-3510-01 11 121476198 121476198 G A SORL1 Silent p.T1622T 0.14 TCGA-AA-3510-01 11 122650298 122650298 C T UBASH3B Missense_Mutation p.L166F 0.32 tolerated(0.08) benign(0.048) TCGA-AA-3510-01 11 12316156 12316156 G T MICALCL Missense_Mutation p.R393I 0.18 deleterious(0.01) possibly_damaging(0.578) TCGA-AA-3510-01 11 123513205 123513205 G A SCN3B Missense_Mutation p.R132W 0.26 deleterious(0.01) probably_damaging(0.948) TCGA-AA-3510-01 11 123597543 123597543 A C ZNF202 Missense_Mutation p.F370C 0.38 tolerated(0.13) benign(0.002) TCGA-AA-3510-01 11 124253257 124253257 C A OR8B2 5'UTR 0.27 TCGA-AA-3510-01 11 124739492 124739492 G T ROBO3 Nonsense_Mutation p.G212* 0.46 TCGA-AA-3510-01 11 125299894 125299894 T C PKNOX2 Missense_Mutation p.M350T 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 11 125505378 125505378 A C CHEK1 Missense_Mutation p.E223A 0.33 tolerated(0.05) benign(0.007) TCGA-AA-3510-01 11 125778123 125778123 T G DDX25 Missense_Mutation p.M115R 0.31 deleterious(0) benign(0.248) TCGA-AA-3510-01 11 126310383 126310383 G T KIRREL3 Silent p.I438I 0.53 TCGA-AA-3510-01 11 126319017 126319017 G A KIRREL3 Missense_Mutation p.S295F 0.39 deleterious(0.04) possibly_damaging(0.839) TCGA-AA-3510-01 11 129805024 129805024 G A PRDM10 Missense_Mutation p.H377Y 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3510-01 11 132016268 132016268 G A NTM Missense_Mutation p.R87H 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 11 132016397 132016397 T C NTM Missense_Mutation p.L130P 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 11 134090483 134090483 C T NCAPD3 Missense_Mutation p.E68K 0.26 tolerated(0.24) benign(0.009) TCGA-AA-3510-01 11 134175112 134175112 A G GLB1L3 Intron 0.33 TCGA-AA-3510-01 11 13438716 13438716 G A BTBD10 Nonsense_Mutation p.R226* 0.25 TCGA-AA-3510-01 11 14096893 14096893 G A SPON1 Intron 0.22 TCGA-AA-3510-01 11 14479093 14479093 A C COPB1 3'UTR 0.22 TCGA-AA-3510-01 11 14482842 14482842 A G COPB1 Missense_Mutation p.C816R 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-AA-3510-01 11 14498481 14498481 C T COPB1 Missense_Mutation p.R480H 0.36 deleterious(0) possibly_damaging(0.908) TCGA-AA-3510-01 11 1466526 1466526 G T BRSK2 Missense_Mutation p.G318V 0.33 deleterious(0.02) possibly_damaging(0.743) TCGA-AA-3510-01 11 15197353 15197353 C T INSC Silent p.C88C 0.29 TCGA-AA-3510-01 11 16424321 16424321 T C SOX6 Intron 0.41 TCGA-AA-3510-01 11 1652148 1652148 C A KRTAP5-5 3'UTR 0.33 TCGA-AA-3510-01 11 17470125 17470125 C T ABCC8 Missense_Mutation p.D424N 0.14 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 11 17483305 17483305 C T ABCC8 Missense_Mutation p.R216H 0.27 deleterious(0.01) benign(0.29) TCGA-AA-3510-01 11 17496474 17496474 G A ABCC8 Silent p.F83F 0.36 TCGA-AA-3510-01 11 17741435 17741435 G A MYOD1 Missense_Mutation p.D36N 0.26 tolerated(1) probably_damaging(0.979) TCGA-AA-3510-01 11 17803249 17803249 T C KCNC1 Missense_Mutation p.Y576H 0.36 tolerated_low_confidence(0.31) benign(0.07) TCGA-AA-3510-01 11 18309150 18309150 A G HPS5 Silent p.C883C 0.27 TCGA-AA-3510-01 11 18309205 18309205 C T HPS5 Missense_Mutation p.R865Q 0.31 deleterious(0.03) probably_damaging(1) TCGA-AA-3510-01 11 18467852 18467852 G A LDHC Missense_Mutation p.R269K 0.39 tolerated(0.15) benign(0.045) TCGA-AA-3510-01 11 19252271 19252271 G A E2F8 Nonsense_Mutation p.R393* 0.38 TCGA-AA-3510-01 11 19372473 19372473 G T NAV2 5'UTR 0.28 TCGA-AA-3510-01 11 198215 198215 G T ODF3 Missense_Mutation p.E109D 0.25 deleterious(0.03) benign(0.124) TCGA-AA-3510-01 11 19970439 19970439 C T NAV2 Missense_Mutation p.R843C 0.43 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 11 22777492 22777492 T G GAS2 Missense_Mutation p.F239C 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 11 2356625 2356625 G T CD81-AS1 Intron 0.21 TCGA-AA-3510-01 11 26529709 26529709 T G ANO3 Missense_Mutation p.I164S 0.39 deleterious(0) benign(0.283) TCGA-AA-3510-01 11 26574823 26574823 C A ANO3 Silent p.V439V 0.56 TCGA-AA-3510-01 11 26582581 26582581 C T MUC15 3'UTR 0.39 TCGA-AA-3510-01 11 26584689 26584689 C T MUC15 Missense_Mutation p.R300Q 0.28 deleterious(0) possibly_damaging(0.776) TCGA-AA-3510-01 11 26586715 26586715 T G MUC15 Missense_Mutation p.K258Q 0.24 tolerated(0.07) possibly_damaging(0.895) TCGA-AA-3510-01 11 27017034 27017034 T G FIBIN 3'UTR 0.30 TCGA-AA-3510-01 11 27371766 27371766 A C CCDC34 Intron 0.32 TCGA-AA-3510-01 11 27390115 27390115 A C LGR4 Missense_Mutation p.L719V 0.34 deleterious(0) probably_damaging(0.98) TCGA-AA-3510-01 11 27397915 27397915 G T LGR4 Missense_Mutation p.S371Y 0.37 tolerated(0.12) benign(0.022) TCGA-AA-3510-01 11 30032083 30032083 G T KCNA4 3'UTR 0.47 TCGA-AA-3510-01 11 30033370 30033370 C T KCNA4 Missense_Mutation p.E286K 0.39 tolerated(0.32) benign(0.103) TCGA-AA-3510-01 11 30255203 30255203 C T FSHB Silent p.P82P 0.23 TCGA-AA-3510-01 11 31327324 31327324 G A DCDC1 Silent p.L198L 0.38 TCGA-AA-3510-01 11 32636381 32636381 C A CCDC73 Nonsense_Mutation p.E495* 0.17 TCGA-AA-3510-01 11 32697187 32697187 C T CCDC73 Missense_Mutation p.R190Q 0.39 tolerated(1) benign(0.001) TCGA-AA-3510-01 11 32954324 32954324 T G QSER1 Missense_Mutation p.F378C 0.12 deleterious(0.01) probably_damaging(0.931) TCGA-AA-3510-01 11 33087513 33087513 A G TCP11L1 Silent p.K370K 0.10 TCGA-AA-3510-01 11 33583251 33583251 G T KIAA1549L Nonsense_Mutation p.E1053* 0.41 TCGA-AA-3510-01 11 35642228 35642228 C T FJX1 3'UTR 0.40 TCGA-AA-3510-01 11 36596790 36596790 G T RAG1 Nonsense_Mutation p.E646* 0.36 TCGA-AA-3510-01 11 36615130 36615130 G A RAG2 Missense_Mutation p.L197F 0.33 tolerated(0.08) benign(0.333) TCGA-AA-3510-01 11 3712616 3712616 C T NUP98 Missense_Mutation p.R1472Q 0.28 tolerated(0.28) benign(0.015) TCGA-AA-3510-01 11 372108 372108 G A B4GALNT4 Splice_Site p.X51_splice 0.21 TCGA-AA-3510-01 11 43343002 43343002 A C API5 Missense_Mutation p.S123R 0.25 deleterious(0.01) possibly_damaging(0.58) TCGA-AA-3510-01 11 43351561 43351561 C T API5 Missense_Mutation p.R392C 0.30 deleterious(0.02) benign(0.12) TCGA-AA-3510-01 11 43418099 43418099 C A TTC17 Intron 0.27 TCGA-AA-3510-01 11 4510777 4510777 T G OR52K1 Missense_Mutation p.V216G 0.06 deleterious(0) possibly_damaging(0.673) TCGA-AA-3510-01 11 46333875 46333875 G T CREB3L1 Splice_Site p.X252_splice 0.40 TCGA-AA-3510-01 11 46750222 46750222 G A F2 Missense_Mutation p.R436Q 0.33 tolerated(0.17) benign(0.203) TCGA-AA-3510-01 11 46761002 46761002 G T F2 3'UTR 0.13 TCGA-AA-3510-01 11 46784576 46784576 G T CKAP5 Missense_Mutation p.H1281N 0.35 deleterious(0.04) possibly_damaging(0.698) TCGA-AA-3510-01 11 4703277 4703277 C T OR51E2 Missense_Mutation p.R222Q 0.31 tolerated(0.14) benign(0.017) TCGA-AA-3510-01 11 47711891 47711891 G T AGBL2 Silent p.V456V 0.36 TCGA-AA-3510-01 11 47741514 47741514 C T FNBP4 Missense_Mutation p.R977Q 0.34 deleterious(0.03) possibly_damaging(0.9) TCGA-AA-3510-01 11 48161171 48161171 G A PTPRJ Silent p.A762A 0.28 TCGA-AA-3510-01 11 4825448 4825448 C T OR52R1 Missense_Mutation p.D55N 0.46 deleterious(0) possibly_damaging(0.786) TCGA-AA-3510-01 11 4843076 4843076 G A OR51F2 Missense_Mutation p.R154Q 0.41 deleterious(0.04) possibly_damaging(0.776) TCGA-AA-3510-01 11 4928755 4928755 G A OR51A7 Silent p.E52E 0.33 TCGA-AA-3510-01 11 4929059 4929059 C A OR51A7 Missense_Mutation p.L154I 0.16 tolerated(0.25) benign(0.062) TCGA-AA-3510-01 11 494900 494900 G A RNH1 Silent p.C427C 0.15 TCGA-AA-3510-01 11 49974329 49974329 G T OR4C13 Missense_Mutation p.D119Y 0.34 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-AA-3510-01 11 5274587 5274587 C A HBG2 Nonsense_Mutation p.E122* 0.29 TCGA-AA-3510-01 11 5275531 5275531 C A HBG2 Missense_Mutation p.E102D 0.25 tolerated(0.42) possibly_damaging(0.796) TCGA-AA-3510-01 11 5410661 5410661 C A OR51M1 Missense_Mutation p.F11L 0.12 tolerated(0.72) benign(0) TCGA-AA-3510-01 11 5411027 5411027 C A OR51M1 Missense_Mutation p.D133E 0.17 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 11 55111083 55111083 G A OR4A16 Missense_Mutation p.R136Q 0.31 tolerated_low_confidence(0.84) benign(0.021) TCGA-AA-3510-01 11 55111318 55111318 C A OR4A16 Silent p.I214I 0.07 TCGA-AA-3510-01 11 5529384 5529384 G A UBQLN3 Missense_Mutation p.P469S 0.30 tolerated(0.26) benign(0.009) TCGA-AA-3510-01 11 55322878 55322878 G T OR4C15 Nonsense_Mutation p.E366* 0.23 TCGA-AA-3510-01 11 55419294 55419294 C A OR4S2 Missense_Mutation p.F305L 0.34 tolerated(0.55) benign(0.002) TCGA-AA-3510-01 11 55432823 55432823 C A OR4C6 Missense_Mutation p.L61I 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3510-01 11 55563751 55563751 C G OR5D14 Missense_Mutation p.F240L 0.08 deleterious(0.03) benign(0.364) TCGA-AA-3510-01 11 5566279 5566279 G A OR52H1 Nonsense_Mutation p.R159* 0.38 TCGA-AA-3510-01 11 55703831 55703831 G A OR5I1 Silent p.L16L 0.22 TCGA-AA-3510-01 11 55904442 55904442 G A OR8J3 Silent p.F251F 0.32 TCGA-AA-3510-01 11 56020531 56020531 C A OR5T3 Missense_Mutation p.L286I 0.30 tolerated(0.15) benign(0.344) TCGA-AA-3510-01 11 56044009 56044009 C T OR5T1 Missense_Mutation p.P299S 0.34 deleterious(0.02) probably_damaging(0.957) TCGA-AA-3510-01 11 56128040 56128040 C A OR8J1 Missense_Mutation p.F106L 0.10 tolerated(0.44) benign(0.001) TCGA-AA-3510-01 11 56184857 56184857 C T OR5R1 Missense_Mutation p.M284I 0.35 deleterious(0) probably_damaging(0.958) TCGA-AA-3510-01 11 57137509 57137509 G A P2RX3 3'UTR 0.24 TCGA-AA-3510-01 11 5717465 5717465 G T TRIM22 Translation_Start_Site p.M1? 0.31 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 11 5719556 5719556 G A TRIM22 Silent p.Q177Q 0.26 TCGA-AA-3510-01 11 57958438 57958438 G A OR9Q2 Missense_Mutation p.R159Q 0.31 tolerated(0.27) possibly_damaging(0.532) TCGA-AA-3510-01 11 57996058 57996058 G A OR10Q1 Missense_Mutation p.S97L 0.29 deleterious(0) benign(0.102) TCGA-AA-3510-01 11 58189993 58189993 C T OR5B2 Missense_Mutation p.V248I 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3510-01 11 5878524 5878524 G A OR52E8 Missense_Mutation p.R137W 0.26 deleterious(0.01) benign(0.028) TCGA-AA-3510-01 11 58892123 58892123 C A FAM111B Missense_Mutation p.L185I 0.35 deleterious(0.05) probably_damaging(0.94) TCGA-AA-3510-01 11 5906463 5906463 T G OR52E4 3'UTR 0.29 TCGA-AA-3510-01 11 59416982 59416982 A C PATL1 Missense_Mutation p.I562M 0.33 deleterious(0.01) possibly_damaging(0.775) TCGA-AA-3510-01 11 60170521 60170521 G T MS4A14 Missense_Mutation p.R152I 0.34 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 11 61111618 61111618 G A DAK Silent p.S371S 0.27 TCGA-AA-3510-01 11 62065096 62065096 C A SCGB1D4 Missense_Mutation p.E30D 0.34 tolerated(0.56) benign(0.026) TCGA-AA-3510-01 11 62286994 62286994 G A AHNAK Silent p.I4965I 0.42 TCGA-AA-3510-01 11 62292875 62292875 T C AHNAK Missense_Mutation p.D3005G 0.09 probably_damaging(0.947) TCGA-AA-3510-01 11 62863494 62863494 G A SLC22A24 Nonsense_Mutation p.R347* 0.41 TCGA-AA-3510-01 11 63072299 63072299 C T SLC22A10 Silent p.V512V 0.29 TCGA-AA-3510-01 11 64365989 64365989 T C SLC22A12 Missense_Mutation p.W278R 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3510-01 11 65009514 65009514 C A SLC22A20 RNA 0.08 TCGA-AA-3510-01 11 65486596 65486596 G A KAT5 Missense_Mutation p.D529N 0.39 tolerated(0.09) possibly_damaging(0.863) TCGA-AA-3510-01 11 6565416 6565416 G A DNHD1 Missense_Mutation p.E1232K 0.45 benign(0.022) TCGA-AA-3510-01 11 65687930 65687930 G A DRAP1 Missense_Mutation p.R109H 0.09 tolerated(0.11) possibly_damaging(0.84) TCGA-AA-3510-01 11 66032647 66032647 C T KLC2 Silent p.R425R 0.08 TCGA-AA-3510-01 11 66062092 66062092 C T TMEM151A Silent p.C125C 0.26 TCGA-AA-3510-01 11 66190147 66190147 C T NPAS4 Missense_Mutation p.R145C 0.31 deleterious(0) probably_damaging(0.984) TCGA-AA-3510-01 11 66444496 66444496 G A RBM4B Missense_Mutation p.R19C 0.27 deleterious(0.04) benign(0.117) TCGA-AA-3510-01 11 66455672 66455672 G A SPTBN2 Silent p.G2114G 0.21 TCGA-AA-3510-01 11 6662084 6662084 G A DCHS1 Missense_Mutation p.A254V 0.13 tolerated(1) benign(0.002) TCGA-AA-3510-01 11 6662406 6662406 G A DCHS1 Missense_Mutation p.R147W 0.25 deleterious(0) possibly_damaging(0.556) TCGA-AA-3510-01 11 67159536 67159536 C T RAD9A Silent p.G7G 0.42 TCGA-AA-3510-01 11 67354107 67354107 A C GSTP1 3'UTR 0.27 TCGA-AA-3510-01 11 67414487 67414487 G A ACY3 Missense_Mutation p.P10S 0.30 deleterious(0) possibly_damaging(0.905) TCGA-AA-3510-01 11 67564267 67564267 G A FAM86C2P RNA 0.26 TCGA-AA-3510-01 11 67938526 67938526 G T SUV420H1 Missense_Mutation p.F311L 0.25 deleterious(0) probably_damaging(0.928) TCGA-AA-3510-01 11 68312376 68312376 G T PPP6R3 Nonsense_Mutation p.E100* 0.33 TCGA-AA-3510-01 11 68529157 68529157 T C CPT1A Splice_Site p.X626_splice 0.26 TCGA-AA-3510-01 11 6913433 6913433 C T OR2D2 Missense_Mutation p.R100Q 0.31 tolerated(1) benign(0) TCGA-AA-3510-01 11 6977669 6977669 G A ZNF215 Silent p.E487E 0.21 TCGA-AA-3510-01 11 70319236 70319236 G A SHANK2 Missense_Mutation p.S1764L 0.32 deleterious(0) benign(0.32) TCGA-AA-3510-01 11 7063673 7063673 A G NLRP14 Missense_Mutation p.D139G 0.30 deleterious(0.01) possibly_damaging(0.521) TCGA-AA-3510-01 11 7081194 7081194 C T NLRP14 Silent p.S901S 0.25 TCGA-AA-3510-01 11 71150111 71150111 G T DHCR7 Missense_Mutation p.F215L 0.30 tolerated(0.33) benign(0.012) TCGA-AA-3510-01 11 71819751 71819751 G A LRTOMT Missense_Mutation p.R219Q 0.19 tolerated(0.16) probably_damaging(0.994) TCGA-AA-3510-01 11 72379354 72379354 G A PDE2A Intron 0.27 TCGA-AA-3510-01 11 7324622 7324622 G T SYT9 Splice_Site p.X166_splice 0.41 TCGA-AA-3510-01 11 73611319 73611319 T C PAAF1 Missense_Mutation p.V129A 0.35 tolerated(0.75) benign(0.014) TCGA-AA-3510-01 11 73915404 73915404 C T PPME1 Nonsense_Mutation p.R68* 0.09 TCGA-AA-3510-01 11 73996951 73996951 C T P4HA3 Missense_Mutation p.R338Q 0.39 deleterious(0.04) benign(0.023) TCGA-AA-3510-01 11 7509565 7509565 G A OLFML1 Missense_Mutation p.E113K 0.42 deleterious(0) benign(0.273) TCGA-AA-3510-01 11 75599883 75599883 G A UVRAG Missense_Mutation p.R148Q 0.26 tolerated(0.06) benign(0.154) TCGA-AA-3510-01 11 76905501 76905501 G A MYO7A Missense_Mutation p.D1419N 0.50 tolerated(0.38) probably_damaging(0.998) TCGA-AA-3510-01 11 7716874 7716874 G A OVCH2 Silent p.F403F 0.36 TCGA-AA-3510-01 11 77340838 77340838 A C CLNS1A Missense_Mutation p.L78V 0.42 deleterious(0) probably_damaging(0.961) TCGA-AA-3510-01 11 77436720 77436720 A G RSF1 Silent p.T201T 0.40 TCGA-AA-3510-01 11 77774957 77774957 G T THRSP Missense_Mutation p.K10N 0.39 deleterious(0.03) benign(0.139) TCGA-AA-3510-01 11 78369190 78369190 G A TENM4 Silent p.F2741F 0.34 TCGA-AA-3510-01 11 78383166 78383166 G T TENM4 Missense_Mutation p.S1902Y 0.38 tolerated(0.06) possibly_damaging(0.866) TCGA-AA-3510-01 11 78387407 78387407 G A TENM4 Silent p.I1762I 0.29 TCGA-AA-3510-01 11 78443525 78443525 G A TENM4 Missense_Mutation p.R992C 0.12 tolerated(0.05) possibly_damaging(0.772) TCGA-AA-3510-01 11 7949668 7949668 G A OR10A6 Missense_Mutation p.T181I 0.28 tolerated(1) benign(0.013) TCGA-AA-3510-01 11 828708 828708 C T EFCAB4A Missense_Mutation p.A34V 0.31 deleterious(0.04) probably_damaging(0.966) TCGA-AA-3510-01 11 82880805 82880805 T G PCF11 Missense_Mutation p.F1143C 0.43 deleterious(0.02) possibly_damaging(0.847) TCGA-AA-3510-01 11 83810083 83810083 G A DLG2 Missense_Mutation p.S211F 0.28 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 11 84245767 84245767 C T DLG2 Missense_Mutation p.R122Q 0.39 deleterious_low_confidence(0.04) probably_damaging(0.964) TCGA-AA-3510-01 11 85435181 85435181 C T SYTL2 Silent p.S773S 0.32 TCGA-AA-3510-01 11 85436442 85436442 G T SYTL2 Missense_Mutation p.S353Y 0.29 tolerated(0.19) probably_damaging(0.956) TCGA-AA-3510-01 11 88742208 88742208 A C GRM5 Intron 0.08 TCGA-AA-3510-01 11 88780430 88780430 T C GRM5 Missense_Mutation p.D204G 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 11 89420567 89420567 C T FOLH1B RNA 0.35 TCGA-AA-3510-01 11 89420587 89420587 G T FOLH1B RNA 0.08 TCGA-AA-3510-01 11 89424138 89424138 A C FOLH1B RNA 0.27 TCGA-AA-3510-01 11 89443766 89443766 G T TRIM77 Missense_Mutation p.K100N 0.37 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 11 89882183 89882183 A G NAALAD2 Missense_Mutation p.T131A 0.36 deleterious(0.01) benign(0.043) TCGA-AA-3510-01 11 89909139 89909139 G T NAALAD2 Splice_Site p.X501_splice 0.31 TCGA-AA-3510-01 11 9077457 9077457 C T SCUBE2 Splice_Site p.X364_splice 0.18 TCGA-AA-3510-01 11 9168693 9168693 A C DENND5A Nonsense_Mutation p.L914* 0.08 TCGA-AA-3510-01 11 9199821 9199821 T G DENND5A Missense_Mutation p.K588N 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 11 92495185 92495185 C T FAT3 Missense_Mutation p.A1278V 0.33 benign(0.08) TCGA-AA-3510-01 11 92531481 92531481 G A FAT3 Missense_Mutation p.V1768I 0.25 benign(0.021) TCGA-AA-3510-01 11 92568207 92568207 C T FAT3 Missense_Mutation p.A3348V 0.09 benign(0.046) TCGA-AA-3510-01 11 93424912 93424912 C T KIAA1731 Missense_Mutation p.S467L 0.31 tolerated(0.65) benign(0.056) TCGA-AA-3510-01 11 93463486 93463486 A C KIAA1731 3'UTR 0.09 TCGA-AA-3510-01 11 93778977 93778977 C T HEPHL1 Silent p.I103I 0.44 TCGA-AA-3510-01 11 94862743 94862743 A C ENDOD1 Nonstop_Mutation p.*501Yext*11 0.32 TCGA-AA-3510-01 11 96124294 96124294 G T JRKL Missense_Mutation p.D161Y 0.26 deleterious(0.02) benign(0.232) TCGA-AA-3510-01 11 96124636 96124636 C T JRKL Nonsense_Mutation p.R275* 0.10 TCGA-AA-3510-01 12 100649855 100649855 C A DEPDC4 Nonsense_Mutation p.E284* 0.35 TCGA-AA-3510-01 12 100787166 100787166 T C SLC17A8 Missense_Mutation p.F165L 0.13 tolerated(0.78) possibly_damaging(0.728) TCGA-AA-3510-01 12 10124180 10124180 C A CLEC12A Missense_Mutation p.F5L 0.33 tolerated_low_confidence(0.06) benign(0.033) TCGA-AA-3510-01 12 101504214 101504214 G A ANO4 Missense_Mutation p.A693T 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 12 101598313 101598313 G A SLC5A8 Missense_Mutation p.R128C 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 12 10163329 10163329 A C CLEC12B 5'UTR 0.31 TCGA-AA-3510-01 12 101745929 101745929 C A UTP20 Missense_Mutation p.H1661N 0.10 deleterious(0.02) benign(0.061) TCGA-AA-3510-01 12 102159942 102159942 C T GNPTAB Nonsense_Mutation p.W513* 0.37 TCGA-AA-3510-01 12 1023606 1023606 C A RAD52 Nonsense_Mutation p.E320* 0.29 TCGA-AA-3510-01 12 10282597 10282597 C T CLEC7A Missense_Mutation p.A29T 0.26 tolerated(0.12) benign(0.002) TCGA-AA-3510-01 12 103762717 103762717 C A C12orf42 Missense_Mutation p.K69N 0.30 deleterious(0.01) probably_damaging(0.958) TCGA-AA-3510-01 12 103762720 103762720 C A C12orf42 Missense_Mutation p.M68I 0.12 deleterious(0.02) possibly_damaging(0.607) TCGA-AA-3510-01 12 104096929 104096929 T G STAB2 Missense_Mutation p.Y1240D 0.40 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 12 104131549 104131549 C T STAB2 Silent p.F1896F 0.34 TCGA-AA-3510-01 12 104481806 104481806 T C HCFC2 Missense_Mutation p.V425A 0.40 tolerated(0.43) benign(0.006) TCGA-AA-3510-01 12 10460609 10460609 C A KLRD1 5'UTR 0.38 TCGA-AA-3510-01 12 10462044 10462044 C T KLRD1 Missense_Mutation p.S22L 0.33 tolerated(1) benign(0.001) TCGA-AA-3510-01 12 10568222 10568222 A C KLRC3 Missense_Mutation p.D253E 0.32 deleterious_low_confidence(0.02) benign(0) TCGA-AA-3510-01 12 107208652 107208652 C A RIC8B Missense_Mutation p.S104Y 0.36 deleterious(0.04) benign(0.005) TCGA-AA-3510-01 12 107237706 107237706 G A RIC8B Missense_Mutation p.R381Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 12 107937845 107937845 C A BTBD11 Missense_Mutation p.F473L 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-AA-3510-01 12 108051418 108051418 C A BTBD11 Missense_Mutation p.L1080I 0.11 deleterious(0.02) possibly_damaging(0.687) TCGA-AA-3510-01 12 108136983 108136983 C T PRDM4 Missense_Mutation p.R491H 0.16 deleterious(0.03) benign(0.003) TCGA-AA-3510-01 12 108170048 108170048 A G ASCL4 3'UTR 0.09 TCGA-AA-3510-01 12 108618593 108618593 C T WSCD2 Silent p.L254L 0.36 TCGA-AA-3510-01 12 108685540 108685540 C A CMKLR1 3'UTR 0.49 TCGA-AA-3510-01 12 109186071 109186071 G A SSH1 Silent p.N628N 0.32 TCGA-AA-3510-01 12 10958754 10958754 G T TAS2R8 Missense_Mutation p.L276I 0.31 tolerated(1) benign(0.07) TCGA-AA-3510-01 12 109604666 109604666 G A ACACB Silent p.R218R 0.43 TCGA-AA-3510-01 12 109700206 109700206 G A ACACB Missense_Mutation p.R2240Q 0.38 deleterious(0) benign(0.052) TCGA-AA-3510-01 12 109895804 109895804 G T KCTD10 Nonsense_Mutation p.S156* 0.24 TCGA-AA-3510-01 12 109936071 109936071 C T UBE3B Missense_Mutation p.R285C 0.31 deleterious(0.03) benign(0.28) TCGA-AA-3510-01 12 110734428 110734428 G A ATP2A2 Missense_Mutation p.E117K 0.11 deleterious(0.03) possibly_damaging(0.798) TCGA-AA-3510-01 12 110783912 110783912 G A ATP2A2 Missense_Mutation p.E950K 0.38 tolerated(0.08) possibly_damaging(0.512) TCGA-AA-3510-01 12 110927859 110927859 G T FAM216A Nonsense_Mutation p.E247* 0.40 TCGA-AA-3510-01 12 112688090 112688090 C A HECTD4 Nonsense_Mutation p.E1124* 0.32 TCGA-AA-3510-01 12 11339135 11339135 A G TAS2R42 Missense_Mutation p.S137P 0.32 deleterious(0.04) probably_damaging(0.987) TCGA-AA-3510-01 12 113444369 113444369 G T OAS2 Missense_Mutation p.K540N 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 12 113633300 113633300 G T IQCD 3'UTR 0.39 TCGA-AA-3510-01 12 117014204 117014204 C T MAP1LC3B2 3'UTR 0.26 TCGA-AA-3510-01 12 117698402 117698402 G T NOS1 Missense_Mutation p.F745L 0.27 deleterious(0.02) probably_damaging(0.966) TCGA-AA-3510-01 12 118293298 118293298 G T KSR2 Missense_Mutation p.A136D 0.26 deleterious(0) benign(0.425) TCGA-AA-3510-01 12 118467597 118467597 G A RFC5 Missense_Mutation p.R298Q 0.26 tolerated(0.07) benign(0.229) TCGA-AA-3510-01 12 1192426 1192426 G A ERC1 Missense_Mutation p.E256K 0.34 tolerated(0.28) benign(0.418) TCGA-AA-3510-01 12 120436359 120436359 G A CCDC64 Missense_Mutation p.R155Q 0.30 tolerated(0.07) possibly_damaging(0.778) TCGA-AA-3510-01 12 120565607 120565607 T G GCN1L1 3'UTR 0.21 TCGA-AA-3510-01 12 121013685 121013685 C T RNF10 Missense_Mutation p.S764F 0.44 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 12 121693603 121693603 G A CAMKK2 Silent p.F267F 0.34 TCGA-AA-3510-01 12 122211333 122211333 T C TMEM120B Missense_Mutation p.V229A 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-AA-3510-01 12 122242663 122242663 C A SETD1B Missense_Mutation p.P7H 0.31 benign(0.004) TCGA-AA-3510-01 12 122369704 122369704 G A WDR66 Missense_Mutation p.R267Q 0.30 tolerated(0.32) benign(0.006) TCGA-AA-3510-01 12 122396368 122396368 C A WDR66 Missense_Mutation p.L641I 0.27 tolerated(0.12) benign(0.145) TCGA-AA-3510-01 12 122437640 122437640 G A WDR66 Missense_Mutation p.E1009K 0.31 deleterious(0) possibly_damaging(0.769) TCGA-AA-3510-01 12 122626391 122626391 C T MLXIP 3'UTR 0.31 TCGA-AA-3510-01 12 123201097 123201097 C T HCAR3 Missense_Mutation p.R63Q 0.43 tolerated(0.06) possibly_damaging(0.606) TCGA-AA-3510-01 12 123265726 123265726 G T CCDC62 Missense_Mutation p.R82I 0.18 deleterious(0.03) possibly_damaging(0.853) TCGA-AA-3510-01 12 124104094 124104094 G A DDX55 Silent p.T483T 0.17 TCGA-AA-3510-01 12 124265794 124265794 G T DNAH10 Missense_Mutation p.M202I 0.38 benign(0.005) TCGA-AA-3510-01 12 124497480 124497480 C T ZNF664 3'UTR 0.35 TCGA-AA-3510-01 12 124499332 124499332 G T ZNF664 3'UTR 0.11 TCGA-AA-3510-01 12 124915273 124915273 G A NCOR2 Missense_Mutation p.R315C 0.23 unknown(0) TCGA-AA-3510-01 12 124950761 124950761 C T NCOR2 Silent p.S221S 0.32 TCGA-AA-3510-01 12 129278675 129278675 T C SLC15A4 3'UTR 0.08 TCGA-AA-3510-01 12 129566577 129566577 C T TMEM132D Silent p.R550R 0.43 TCGA-AA-3510-01 12 130831096 130831096 G A PIWIL1 Silent p.T166T 0.20 TCGA-AA-3510-01 12 130892329 130892329 C A RIMBP2 Missense_Mutation p.R956I 0.30 deleterious(0.02) possibly_damaging(0.896) TCGA-AA-3510-01 12 13139995 13139995 A C HEBP1 Intron 0.43 TCGA-AA-3510-01 12 13232900 13232900 G A KIAA1467 Missense_Mutation p.R607Q 0.29 deleterious(0.03) probably_damaging(0.966) TCGA-AA-3510-01 12 132405882 132405882 G A ULK1 Silent p.A1043A 0.35 TCGA-AA-3510-01 12 133249857 133249857 C G POLE Missense_Mutation p.A456P 0.37 deleterious(0) probably_damaging(0.98) TCGA-AA-3510-01 12 133254246 133254246 T G POLE Missense_Mutation p.D213A 0.36 deleterious(0.03) possibly_damaging(0.788) TCGA-AA-3510-01 12 133256560 133256560 G A POLE Missense_Mutation p.P135S 0.33 tolerated(0.81) benign(0.006) TCGA-AA-3510-01 12 13367639 13367639 C A EMP1 3'UTR 0.26 TCGA-AA-3510-01 12 133732964 133732964 G T ZNF10 Nonsense_Mutation p.E378* 0.32 TCGA-AA-3510-01 12 14634098 14634098 C T ATF7IP Missense_Mutation p.R1087W 0.29 deleterious_low_confidence(0) unknown(0) TCGA-AA-3510-01 12 15262229 15262229 C A RERG Nonsense_Mutation p.E139* 0.39 TCGA-AA-3510-01 12 15731791 15731791 T G PTPRO Missense_Mutation p.L945W 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 12 18234364 18234364 G T RERGL Missense_Mutation p.L127I 0.33 deleterious(0.04) probably_damaging(0.986) TCGA-AA-3510-01 12 18435088 18435088 C A PIK3C2G Missense_Mutation p.L25I 0.36 deleterious_low_confidence(0.02) benign(0.024) TCGA-AA-3510-01 12 18841083 18841083 C A PLCZ1 Nonsense_Mutation p.E511* 0.42 TCGA-AA-3510-01 12 20876023 20876023 G A SLCO1C1 Splice_Site p.X341_splice 0.19 TCGA-AA-3510-01 12 21015695 21015695 T G SLCO1B3 Missense_Mutation p.L212V 0.36 tolerated(0.43) benign(0.341) TCGA-AA-3510-01 12 21168708 21168708 G A SLCO1B7 Missense_Mutation p.E27K 0.27 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 12 21422390 21422390 A C SLCO1A2 3'UTR 0.40 TCGA-AA-3510-01 12 21472433 21472433 C T SLCO1A2 Intron 0.44 TCGA-AA-3510-01 12 21689866 21689866 C A GYS2 3'UTR 0.35 TCGA-AA-3510-01 12 21733396 21733396 C A GYS2 Missense_Mutation p.E61D 0.41 tolerated(1) benign(0.01) TCGA-AA-3510-01 12 21918693 21918693 C A KCNJ8 Missense_Mutation p.M413I 0.33 tolerated_low_confidence(0.53) benign(0) TCGA-AA-3510-01 12 21998574 21998574 G A ABCC9 Missense_Mutation p.S1020L 0.30 deleterious(0.01) benign(0.144) TCGA-AA-3510-01 12 22401947 22401947 G A ST8SIA1 Missense_Mutation p.R193W 0.20 deleterious(0.02) possibly_damaging(0.809) TCGA-AA-3510-01 12 22677460 22677460 G A C2CD5 Missense_Mutation p.R183C 0.12 deleterious(0) probably_damaging(0.957) TCGA-AA-3510-01 12 22677465 22677465 C T C2CD5 Missense_Mutation p.R181Q 0.32 deleterious(0.01) benign(0.17) TCGA-AA-3510-01 12 25362664 25362664 T G KRAS 3'UTR 0.34 TCGA-AA-3510-01 12 25362805 25362805 C T KRAS 3'UTR 0.33 TCGA-AA-3510-01 12 26639077 26639077 A C ITPR2 Missense_Mutation p.F1924C 0.31 deleterious(0) probably_damaging(0.98) TCGA-AA-3510-01 12 26648163 26648163 G A ITPR2 Nonsense_Mutation p.R1702* 0.17 TCGA-AA-3510-01 12 27126917 27126917 C T TM7SF3 Missense_Mutation p.R565K 0.08 deleterious(0.02) probably_damaging(0.985) TCGA-AA-3510-01 12 27181424 27181424 G T MED21 3'UTR 0.29 TCGA-AA-3510-01 12 27554293 27554293 G A ARNTL2 Missense_Mutation p.A422T 0.15 tolerated(0.22) probably_damaging(0.99) TCGA-AA-3510-01 12 29904705 29904705 G A TMTC1 Missense_Mutation p.R278W 0.28 tolerated(0.09) possibly_damaging(0.724) TCGA-AA-3510-01 12 2997555 2997555 G A RHNO1 Missense_Mutation p.R216Q 0.40 deleterious(0.02) probably_damaging(1) TCGA-AA-3510-01 12 3042590 3042590 C A TULP3 Missense_Mutation p.L235I 0.24 deleterious(0.01) possibly_damaging(0.763) TCGA-AA-3510-01 12 31116763 31116763 C T TSPAN11 Silent p.V29V 0.38 TCGA-AA-3510-01 12 31249282 31249282 G A DDX11 Missense_Mutation p.R497Q 0.08 tolerated(0.14) possibly_damaging(0.653) TCGA-AA-3510-01 12 31440587 31440587 C A FAM60A Missense_Mutation p.D163Y 0.09 deleterious(0) possibly_damaging(0.452) TCGA-AA-3510-01 12 31633152 31633152 G A DENND5B Missense_Mutation p.T92M 0.13 tolerated(0.09) benign(0.017) TCGA-AA-3510-01 12 32134983 32134983 C T KIAA1551 Missense_Mutation p.A365V 0.34 tolerated(0.3) benign(0.067) TCGA-AA-3510-01 12 34178904 34178904 T G ALG10 Missense_Mutation p.F159C 0.35 deleterious(0) probably_damaging(0.956) TCGA-AA-3510-01 12 40158303 40158303 G A SLC2A13 Missense_Mutation p.S560L 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 12 40668695 40668695 T G LRRK2 Missense_Mutation p.I614S 0.24 deleterious(0) benign(0.302) TCGA-AA-3510-01 12 40692269 40692269 G T LRRK2 Missense_Mutation p.E1107D 0.32 tolerated(0.29) benign(0.387) TCGA-AA-3510-01 12 40715870 40715870 G A LRRK2 Missense_Mutation p.R1735Q 0.17 deleterious(0) probably_damaging(0.93) TCGA-AA-3510-01 12 41327520 41327520 G A CNTN1 Nonsense_Mutation p.W275* 0.30 TCGA-AA-3510-01 12 41333275 41333275 T C CNTN1 Missense_Mutation p.V456A 0.25 tolerated(0.52) benign(0.102) TCGA-AA-3510-01 12 41422946 41422946 G T CNTN1 Missense_Mutation p.D969Y 0.27 deleterious(0) benign(0.231) TCGA-AA-3510-01 12 41900435 41900435 G A PDZRN4 Missense_Mutation p.E341K 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3510-01 12 41966259 41966259 G T PDZRN4 Nonsense_Mutation p.E560* 0.31 TCGA-AA-3510-01 12 41966269 41966269 G A PDZRN4 Missense_Mutation p.R563Q 0.33 deleterious(0.01) possibly_damaging(0.836) TCGA-AA-3510-01 12 42792725 42792725 G T PPHLN1 Nonsense_Mutation p.E280* 0.37 TCGA-AA-3510-01 12 43826491 43826491 G T ADAMTS20 Nonsense_Mutation p.Y948* 0.11 TCGA-AA-3510-01 12 44148322 44148322 T G PUS7L Missense_Mutation p.K243Q 0.15 deleterious(0.03) benign(0.183) TCGA-AA-3510-01 12 44537360 44537360 G A TMEM117 Missense_Mutation p.R148Q 0.35 tolerated(0.11) probably_damaging(0.979) TCGA-AA-3510-01 12 45097533 45097533 G A NELL2 Nonsense_Mutation p.R482* 0.41 TCGA-AA-3510-01 12 45567220 45567220 T C PLEKHA8P1 RNA 0.32 TCGA-AA-3510-01 12 45686606 45686606 G T ANO6 Intron 0.36 TCGA-AA-3510-01 12 45796945 45796945 A G ANO6 Missense_Mutation p.Y589C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 12 46230641 46230641 C T ARID2 Missense_Mutation p.S297F 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 12 46315876 46315876 C A SCAF11 Missense_Mutation p.K1449N 0.08 deleterious(0) possibly_damaging(0.874) TCGA-AA-3510-01 12 46320302 46320302 T G SCAF11 Missense_Mutation p.K1061T 0.16 deleterious(0) probably_damaging(0.938) TCGA-AA-3510-01 12 472231 472231 T G KDM5A Missense_Mutation p.E190D 0.36 tolerated(0.49) benign(0.007) TCGA-AA-3510-01 12 48367304 48367304 G A COL2A1 Silent p.I1450I 0.34 TCGA-AA-3510-01 12 48547209 48547209 C T ASB8 Missense_Mutation p.R24Q 0.14 tolerated(0.08) possibly_damaging(0.602) TCGA-AA-3510-01 12 49224335 49224335 C T DDX23 Missense_Mutation p.E794K 0.32 deleterious(0.02) benign(0.07) TCGA-AA-3510-01 12 49415633 49415633 T C KMT2D Missense_Mutation p.D5515G 0.29 unknown(0) TCGA-AA-3510-01 12 49434090 49434090 G A KMT2D Missense_Mutation p.S2488L 0.23 benign(0.443) TCGA-AA-3510-01 12 49488013 49488013 C T DHH Missense_Mutation p.A95T 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-AA-3510-01 12 50189448 50189448 C T NCKAP5L Missense_Mutation p.G732D 0.31 tolerated(0.11) probably_damaging(1) TCGA-AA-3510-01 12 5023620 5023620 G T KCNA1 3'UTR 0.35 TCGA-AA-3510-01 12 50387974 50387974 G A RACGAP1 Nonsense_Mutation p.R427* 0.36 TCGA-AA-3510-01 12 50571158 50571158 C A LIMA1 Nonsense_Mutation p.E658* 0.34 TCGA-AA-3510-01 12 50831589 50831589 C A LARP4 Missense_Mutation p.L203I 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 12 51135289 51135289 C T DIP2B Missense_Mutation p.S1482L 0.19 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 12 51497497 51497497 C T TFCP2 Missense_Mutation p.R339Q 0.11 tolerated(0.2) benign(0.034) TCGA-AA-3510-01 12 5155266 5155266 T C KCNA5 3'UTR 0.23 TCGA-AA-3510-01 12 51868147 51868147 G T SLC4A8 Missense_Mutation p.E642D 0.30 tolerated(1) benign(0.002) TCGA-AA-3510-01 12 52093514 52093514 C T SCN8A Silent p.N289N 0.39 TCGA-AA-3510-01 12 52281965 52281965 C T ANKRD33 5'UTR 0.20 TCGA-AA-3510-01 12 52844261 52844261 G A KRT6B Silent p.I228I 0.09 TCGA-AA-3510-01 12 52863032 52863032 G A KRT6C Silent p.V503V 0.35 TCGA-AA-3510-01 12 52913943 52913943 G A KRT5 Silent p.F46F 0.40 TCGA-AA-3510-01 12 53096886 53096886 A G KRT77 Silent p.G111G 0.35 TCGA-AA-3510-01 12 53164944 53164944 C A KRT76 Missense_Mutation p.K441N 0.37 deleterious(0.01) possibly_damaging(0.477) TCGA-AA-3510-01 12 53225351 53225351 C T KRT79 Silent p.E179E 0.24 TCGA-AA-3510-01 12 53241777 53241777 C T KRT78 Silent p.K171K 0.40 TCGA-AA-3510-01 12 53898557 53898557 G T TARBP2 Nonsense_Mutation p.E191* 0.54 TCGA-AA-3510-01 12 54350308 54350308 G T HOXC12 Missense_Mutation p.K269N 0.23 deleterious(0) probably_damaging(0.986) TCGA-AA-3510-01 12 54379056 54379056 C T HOXC10 Missense_Mutation p.R5C 0.44 deleterious(0.01) benign(0.445) TCGA-AA-3510-01 12 54914595 54914595 G T NCKAP1L Missense_Mutation p.E581D 0.31 tolerated(0.59) benign(0.05) TCGA-AA-3510-01 12 54964024 54964024 G T PDE1B Splice_Site p.X160_splice 0.33 TCGA-AA-3510-01 12 55423294 55423294 C T NEUROD4 3'UTR 0.19 TCGA-AA-3510-01 12 55688900 55688900 C A OR6C6 Silent p.G39G 0.38 TCGA-AA-3510-01 12 56091275 56091275 C A ITGA7 Missense_Mutation p.D493Y 0.32 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 12 56197484 56197484 G A SARNP Missense_Mutation p.A22V 0.26 tolerated(0.09) probably_damaging(0.998) TCGA-AA-3510-01 12 56231124 56231124 C T MMP19 Missense_Mutation p.R408Q 0.09 tolerated(0.35) benign(0.012) TCGA-AA-3510-01 12 56347543 56347543 C A DGKA Missense_Mutation p.F733L 0.54 tolerated(0.46) benign(0.009) TCGA-AA-3510-01 12 56488212 56488212 C A ERBB3 Silent p.A577A 0.15 TCGA-AA-3510-01 12 56638760 56638760 C T ANKRD52 Missense_Mutation p.D836N 0.33 tolerated(0.06) benign(0.085) TCGA-AA-3510-01 12 56737182 56737182 A C STAT2 Silent p.S849S 0.29 TCGA-AA-3510-01 12 57137855 57137855 A C PRIM1 Missense_Mutation p.F211C 0.26 deleterious(0.04) benign(0.126) TCGA-AA-3510-01 12 57486938 57486938 C T NAB2 Silent p.S412S 0.41 TCGA-AA-3510-01 12 5756890 5756890 T G ANO2 Intron 0.41 TCGA-AA-3510-01 12 57850174 57850174 G A INHBE Missense_Mutation p.S199N 0.38 tolerated(0.48) benign(0.007) TCGA-AA-3510-01 12 57968949 57968949 C A KIF5A Missense_Mutation p.S600Y 0.40 deleterious(0) possibly_damaging(0.822) TCGA-AA-3510-01 12 57971816 57971816 A C KIF5A Missense_Mutation p.N796H 0.31 deleterious(0.01) probably_damaging(0.937) TCGA-AA-3510-01 12 58001351 58001351 C T DTX3 Silent p.Y235Y 0.32 TCGA-AA-3510-01 12 58128170 58128170 C A AGAP2 Nonsense_Mutation p.E445* 0.31 TCGA-AA-3510-01 12 59268008 59268008 C T LRIG3 Missense_Mutation p.E982K 0.23 tolerated_low_confidence(0.11) benign(0.036) TCGA-AA-3510-01 12 6145602 6145602 C T VWF Missense_Mutation p.G833D 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-AA-3510-01 12 6204517 6204517 C T VWF Intron 0.35 TCGA-AA-3510-01 12 62104101 62104101 C A FAM19A2 3'UTR 0.29 TCGA-AA-3510-01 12 654052 654052 G A B4GALNT3 Missense_Mutation p.R151H 0.44 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 12 6562670 6562670 A C TAPBPL Missense_Mutation p.K118T 0.15 deleterious(0.01) possibly_damaging(0.641) TCGA-AA-3510-01 12 6632016 6632016 C A NCAPD2 Missense_Mutation p.F659L 0.36 deleterious(0) probably_damaging(0.96) TCGA-AA-3510-01 12 66641981 66641981 G T IRAK3 3'UTR 0.23 TCGA-AA-3510-01 12 66909495 66909495 G A GRIP1 Missense_Mutation p.R210W 0.20 deleterious(0.02) probably_damaging(0.972) TCGA-AA-3510-01 12 66923614 66923614 G A GRIP1 Nonsense_Mutation p.R167* 0.35 TCGA-AA-3510-01 12 67700303 67700303 C T CAND1 Missense_Mutation p.A952V 0.28 deleterious(0) probably_damaging(0.929) TCGA-AA-3510-01 12 68055578 68055578 T G DYRK2 3'UTR 0.40 TCGA-AA-3510-01 12 68619258 68619258 C T IL26 Missense_Mutation p.R65Q 0.24 tolerated(0.32) benign(0.056) TCGA-AA-3510-01 12 6882050 6882050 T G LAG3 Missense_Mutation p.F11C 0.16 deleterious(0) possibly_damaging(0.628) TCGA-AA-3510-01 12 6925179 6925179 C T CD4 Intron 0.44 TCGA-AA-3510-01 12 6948188 6948188 C T LEPREL2 Missense_Mutation p.R643C 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 12 6948284 6948284 G A LEPREL2 Missense_Mutation p.A675T 0.33 tolerated(0.06) possibly_damaging(0.892) TCGA-AA-3510-01 12 6948479 6948479 G T LEPREL2 Nonsense_Mutation p.E688* 0.25 TCGA-AA-3510-01 12 6948605 6948605 C T LEPREL2 Missense_Mutation p.R730W 0.33 deleterious(0.02) benign(0.019) TCGA-AA-3510-01 12 69747062 69747062 T C LYZ 3'UTR 0.34 TCGA-AA-3510-01 12 70981006 70981006 C A PTPRB Nonsense_Mutation p.E698* 0.39 TCGA-AA-3510-01 12 71978361 71978361 C T LGR5 Silent p.V857V 0.30 TCGA-AA-3510-01 12 75874698 75874698 C A GLIPR1 Missense_Mutation p.S13Y 0.30 tolerated(0.35) benign(0.235) TCGA-AA-3510-01 12 7632463 7632463 G A CD163 3'UTR 0.29 TCGA-AA-3510-01 12 7647881 7647881 C T CD163 Missense_Mutation p.E406K 0.11 tolerated(0.17) benign(0.049) TCGA-AA-3510-01 12 76881395 76881395 A C OSBPL8 5'UTR 0.30 TCGA-AA-3510-01 12 78362353 78362353 G A NAV3 Missense_Mutation p.R181H 0.37 deleterious(0) benign(0.385) TCGA-AA-3510-01 12 78574814 78574814 C T NAV3 Missense_Mutation p.A1872V 0.33 tolerated(0.08) benign(0.032) TCGA-AA-3510-01 12 79689943 79689943 A C SYT1 Missense_Mutation p.K190T 0.28 deleterious(0.04) probably_damaging(0.984) TCGA-AA-3510-01 12 80936614 80936614 A G PTPRQ Missense_Mutation p.Y1272C 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 12 81101538 81101538 T G MYF6 Missense_Mutation p.Y14D 0.27 deleterious(0) possibly_damaging(0.9) TCGA-AA-3510-01 12 81528766 81528766 C T ACSS3 Missense_Mutation p.R210C 0.09 deleterious(0) possibly_damaging(0.677) TCGA-AA-3510-01 12 81610681 81610681 G A ACSS3 Silent p.E452E 0.45 TCGA-AA-3510-01 12 8196680 8196680 A G FOXJ2 Missense_Mutation p.Y204C 0.22 deleterious(0.02) possibly_damaging(0.707) TCGA-AA-3510-01 12 8211461 8211461 C A C3AR1 Missense_Mutation p.D441Y 0.27 deleterious(0) probably_damaging(0.982) TCGA-AA-3510-01 12 8211947 8211947 C T C3AR1 Missense_Mutation p.E279K 0.30 tolerated(0.76) benign(0) TCGA-AA-3510-01 12 8330045 8330045 G T ZNF705A Nonsense_Mutation p.E257* 0.27 TCGA-AA-3510-01 12 85417130 85417130 C T TSPAN19 Missense_Mutation p.A105T 0.41 tolerated(0.16) benign(0.007) TCGA-AA-3510-01 12 85449780 85449780 C T LRRIQ1 Silent p.S403S 0.28 TCGA-AA-3510-01 12 85547849 85547849 C T LRRIQ1 Missense_Mutation p.S1566L 0.33 deleterious(0.02) probably_damaging(0.913) TCGA-AA-3510-01 12 8608667 8608668 - A CLEC6A 5'UTR 0.31 TCGA-AA-3510-01 12 86198903 86198903 G A RASSF9 Silent p.C295C 0.28 TCGA-AA-3510-01 12 86276154 86276154 G T NTS 3'UTR 0.25 TCGA-AA-3510-01 12 8687287 8687288 - A CLEC4E Frame_Shift_Ins p.R203Sfs*4 0.21 TCGA-AA-3510-01 12 8756805 8756805 A G AICDA 3'UTR 0.33 TCGA-AA-3510-01 12 8757476 8757476 C A AICDA Missense_Mutation p.R157I 0.34 deleterious(0.05) benign(0.082) TCGA-AA-3510-01 12 88512325 88512325 C T CEP290 Missense_Mutation p.R549Q 0.36 probably_damaging(0.998) TCGA-AA-3510-01 12 8976343 8976343 G T A2ML1 Nonsense_Mutation p.E92* 0.54 TCGA-AA-3510-01 12 91449561 91449561 C T KERA Silent p.E166E 0.31 TCGA-AA-3510-01 12 91502039 91502039 C T LUM Missense_Mutation p.E240K 0.32 tolerated(1) benign(0.007) TCGA-AA-3510-01 12 9231873 9231873 C A A2M Missense_Mutation p.G1029V 0.32 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 12 92818808 92818808 C T CLLU1 Missense_Mutation p.R118C 0.07 possibly_damaging(0.833) TCGA-AA-3510-01 12 9305737 9305737 C A PZP Missense_Mutation p.R1326I 0.15 deleterious(0) probably_damaging(0.986) TCGA-AA-3510-01 12 93245998 93245998 C A EEA1 Nonsense_Mutation p.E199* 0.28 TCGA-AA-3510-01 12 94543462 94543462 C A PLXNC1 Missense_Mutation p.L239I 0.24 tolerated(0.18) benign(0.298) TCGA-AA-3510-01 12 95365337 95365337 C T NDUFA12 Missense_Mutation p.R106H 0.33 tolerated(0.2) benign(0.066) TCGA-AA-3510-01 12 96673943 96673943 G T CDK17 3'UTR 0.13 TCGA-AA-3510-01 12 97133832 97133832 G T C12orf55 Missense_Mutation p.G2355V 0.42 tolerated(0.26) benign(0) TCGA-AA-3510-01 12 98850092 98850092 C T SLC9A7P1 RNA 0.44 TCGA-AA-3510-01 12 9997115 9997115 G T KLRF1 Missense_Mutation p.C230F 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 13 100206603 100206603 C T TM9SF2 Missense_Mutation p.P512S 0.29 deleterious(0) possibly_damaging(0.777) TCGA-AA-3510-01 13 103382207 103382207 C T CCDC168 Missense_Mutation p.R2318K 0.34 tolerated(1) unknown(0) TCGA-AA-3510-01 13 103384314 103384314 G A CCDC168 Missense_Mutation p.R1616W 0.05 tolerated(0.12) unknown(0) TCGA-AA-3510-01 13 103385293 103385293 C T CCDC168 Silent p.P1289P 0.34 TCGA-AA-3510-01 13 103385562 103385562 C A CCDC168 Missense_Mutation p.D1200Y 0.30 tolerated(0.1) unknown(0) TCGA-AA-3510-01 13 103484012 103484012 C T BIVM-ERCC5 Silent p.F305F 0.35 TCGA-AA-3510-01 13 103524701 103524701 G A BIVM-ERCC5 Silent p.S1370S 0.31 TCGA-AA-3510-01 13 108861363 108861363 C A LIG4 Nonsense_Mutation p.E752* 0.32 TCGA-AA-3510-01 13 108885204 108885204 G T ABHD13 3'UTR 0.59 TCGA-AA-3510-01 13 109707842 109707842 T G MYO16 Missense_Mutation p.F1056L 0.30 tolerated(0.26) probably_damaging(0.91) TCGA-AA-3510-01 13 111926250 111926250 G A ARHGEF7 Missense_Mutation p.R409H 0.36 deleterious(0) possibly_damaging(0.777) TCGA-AA-3510-01 13 113909434 113909434 G A CUL4A Missense_Mutation p.E676K 0.36 deleterious(0) probably_damaging(0.958) TCGA-AA-3510-01 13 114288233 114288233 G A TFDP1 Missense_Mutation p.R168H 0.26 deleterious(0) probably_damaging(0.973) TCGA-AA-3510-01 13 114290421 114290421 G A TFDP1 Missense_Mutation p.D273N 0.24 tolerated(0.3) benign(0.046) TCGA-AA-3510-01 13 115048347 115048347 A C UPF3A Missense_Mutation p.N117T 0.36 deleterious(0) probably_damaging(0.918) TCGA-AA-3510-01 13 115092405 115092405 C A CHAMP1 3'UTR 0.36 TCGA-AA-3510-01 13 19997140 19997140 C A TPTE2 3'UTR 0.31 TCGA-AA-3510-01 13 20000648 20000648 C A TPTE2 Missense_Mutation p.D438Y 0.29 deleterious(0) benign(0.214) TCGA-AA-3510-01 13 20220883 20220883 A G MPHOSPH8 Missense_Mutation p.T224A 0.35 tolerated_low_confidence(0.13) benign(0.004) TCGA-AA-3510-01 13 20325427 20325427 T G PSPC1 Missense_Mutation p.L317F 0.33 deleterious(0.02) benign(0.434) TCGA-AA-3510-01 13 20797319 20797319 C T GJB6 Missense_Mutation p.E101K 0.46 tolerated(0.33) benign(0.009) TCGA-AA-3510-01 13 21374438 21374438 G A XPO4 Silent p.F668F 0.15 TCGA-AA-3510-01 13 21396385 21396385 G T XPO4 Missense_Mutation p.S295Y 0.26 deleterious(0) probably_damaging(0.969) TCGA-AA-3510-01 13 21620200 21620200 C A LATS2 5'UTR 0.31 TCGA-AA-3510-01 13 21987848 21987848 C A ZDHHC20 Nonsense_Mutation p.E105* 0.31 TCGA-AA-3510-01 13 22084147 22084147 G A MICU2 Nonsense_Mutation p.R253* 0.25 TCGA-AA-3510-01 13 23905041 23905041 C T SACS Missense_Mutation p.R4325Q 0.26 probably_damaging(0.978) TCGA-AA-3510-01 13 23907076 23907076 C A SACS Nonsense_Mutation p.E3647* 0.27 TCGA-AA-3510-01 13 23907796 23907796 G T SACS Missense_Mutation p.L3407I 0.30 probably_damaging(0.984) TCGA-AA-3510-01 13 23909298 23909298 C T SACS Missense_Mutation p.R2906Q 0.36 probably_damaging(0.99) TCGA-AA-3510-01 13 23911741 23911741 G T SACS Missense_Mutation p.L2092I 0.31 probably_damaging(0.984) TCGA-AA-3510-01 13 23913388 23913388 C A SACS Nonsense_Mutation p.E1543* 0.26 TCGA-AA-3510-01 13 23929713 23929713 C T SACS Silent p.P346P 0.30 TCGA-AA-3510-01 13 24448990 24448990 C A MIPEP Nonsense_Mutation p.E200* 0.31 TCGA-AA-3510-01 13 25072318 25072318 G A PARP4 Missense_Mutation p.S176L 0.22 tolerated(0.69) benign(0.003) TCGA-AA-3510-01 13 25418099 25418099 T G RNF17 Missense_Mutation p.L941V 0.30 tolerated(0.22) possibly_damaging(0.874) TCGA-AA-3510-01 13 25823488 25823488 C T MTMR6 Missense_Mutation p.R583Q 0.11 tolerated_low_confidence(0.09) benign(0.408) TCGA-AA-3510-01 13 26542790 26542790 C T ATP8A2 Missense_Mutation p.A1117V 0.48 tolerated(0.66) benign(0.002) TCGA-AA-3510-01 13 26789108 26789108 C T RNF6 Missense_Mutation p.R304Q 0.32 deleterious(0.05) benign(0.074) TCGA-AA-3510-01 13 26975607 26975607 A G CDK8 Missense_Mutation p.N372S 0.21 tolerated(0.81) benign(0.001) TCGA-AA-3510-01 13 27246057 27246057 C A WASF3 Missense_Mutation p.F157L 0.33 deleterious(0.01) benign(0.145) TCGA-AA-3510-01 13 27845672 27845672 A C RASL11A Missense_Mutation p.N59T 0.32 tolerated(0.49) probably_damaging(0.985) TCGA-AA-3510-01 13 28122449 28122449 G T LNX2 3'UTR 0.31 TCGA-AA-3510-01 13 28519478 28519478 A C ATP5EP2 Missense_Mutation p.K28Q 0.41 deleterious(0) probably_damaging(0.939) TCGA-AA-3510-01 13 29292044 29292044 C A SLC46A3 Missense_Mutation p.R31I 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 13 30066845 30066845 C T MTUS2 Silent p.L1200L 0.10 TCGA-AA-3510-01 13 31903791 31903791 C T B3GALTL Nonsense_Mutation p.R495* 0.37 TCGA-AA-3510-01 13 32376325 32376325 A G RXFP2 Missense_Mutation p.N683S 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 13 32526884 32526884 G A EEF1DP3 RNA 0.44 TCGA-AA-3510-01 13 32885905 32885905 G A ZAR1L Missense_Mutation p.A53V 0.31 tolerated(0.17) benign(0.071) TCGA-AA-3510-01 13 32932056 32932056 G T BRCA2 Nonsense_Mutation p.E2599* 0.28 TCGA-AA-3510-01 13 33628395 33628395 C A KL Missense_Mutation p.F437L 0.25 deleterious(0) probably_damaging(0.984) TCGA-AA-3510-01 13 33684877 33684877 G T STARD13 Missense_Mutation p.F925L 0.42 deleterious(0) benign(0.35) TCGA-AA-3510-01 13 35692599 35692599 G T NBEA Missense_Mutation p.R744I 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 13 36367608 36367608 G A DCLK1 Silent p.G651G 0.29 TCGA-AA-3510-01 13 37006796 37006796 C T CCNA1 Missense_Mutation p.S13F 0.30 deleterious_low_confidence(0.04) benign(0) TCGA-AA-3510-01 13 39265301 39265301 G T FREM2 Nonsense_Mutation p.E1274* 0.30 TCGA-AA-3510-01 13 39425912 39425912 C T FREM2 Missense_Mutation p.R2278C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 13 40229995 40229995 G A COG6 Silent p.E44E 0.22 TCGA-AA-3510-01 13 40297472 40297472 C T COG6 Silent p.I529I 0.26 TCGA-AA-3510-01 13 41515264 41515264 G A ELF1 Missense_Mutation p.S350F 0.30 deleterious(0.04) benign(0.238) TCGA-AA-3510-01 13 41768608 41768608 C A KBTBD7 5'UTR 0.29 TCGA-AA-3510-01 13 45147520 45147520 G T TSC22D1 Missense_Mutation p.F897L 0.08 deleterious(0.04) possibly_damaging(0.831) TCGA-AA-3510-01 13 45517710 45517710 C A NUFIP1 Missense_Mutation p.R413I 0.14 tolerated(0.11) benign(0.312) TCGA-AA-3510-01 13 45768375 45768375 G T KCTD4 Missense_Mutation p.L110I 0.15 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 13 46538121 46538121 C T ZC3H13 Missense_Mutation p.E1511K 0.29 unknown(0) TCGA-AA-3510-01 13 46543679 46543679 C A ZC3H13 Missense_Mutation p.K1000N 0.16 unknown(0) TCGA-AA-3510-01 13 46549950 46549950 G A ZC3H13 Nonsense_Mutation p.R646* 0.32 TCGA-AA-3510-01 13 46629917 46629917 C T CPB2 Missense_Mutation p.G356D 0.17 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 13 46841039 46841039 C A LRRC63 Missense_Mutation p.F494L 0.43 tolerated(0.09) possibly_damaging(0.624) TCGA-AA-3510-01 13 48832973 48832973 A G ITM2B Missense_Mutation p.H202R 0.38 deleterious(0.01) benign(0.197) TCGA-AA-3510-01 13 48941654 48941654 G A RB1 Missense_Mutation p.E322K 0.38 deleterious(0.01) benign(0.37) TCGA-AA-3510-01 13 49752761 49752761 C A FNDC3A Missense_Mutation p.L530I 0.40 deleterious(0) probably_damaging(0.944) TCGA-AA-3510-01 13 49884890 49884890 G T CAB39L 3'UTR 0.15 TCGA-AA-3510-01 13 51594791 51594791 C T GUCY1B2 RNA 0.18 TCGA-AA-3510-01 13 51936126 51936126 C A SERPINE3 Missense_Mutation p.S423Y 0.08 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-AA-3510-01 13 52332385 52332385 C T WDFY2 Silent p.F374F 0.31 TCGA-AA-3510-01 13 52539046 52539046 C T ATP7B Missense_Mutation p.E611K 0.30 deleterious(0) probably_damaging(0.989) TCGA-AA-3510-01 13 52971462 52971462 T C THSD1 Missense_Mutation p.D309G 0.27 deleterious(0.01) possibly_damaging(0.721) TCGA-AA-3510-01 13 53608624 53608624 G T OLFM4 Nonsense_Mutation p.E116* 0.10 TCGA-AA-3510-01 13 53624833 53624833 A C OLFM4 Missense_Mutation p.D487A 0.34 deleterious(0) probably_damaging(0.982) TCGA-AA-3510-01 13 58299009 58299009 G A PCDH17 Missense_Mutation p.A1021T 0.26 tolerated(0.07) benign(0.013) TCGA-AA-3510-01 13 61985372 61985372 A C PCDH20 3'UTR 0.39 TCGA-AA-3510-01 13 64321092 64321092 C T AL445989.1 Silent p.G53G 0.27 TCGA-AA-3510-01 13 66879005 66879005 C A PCDH9 Nonsense_Mutation p.E1166* 0.27 TCGA-AA-3510-01 13 72440763 72440763 A G DACH1 Missense_Mutation p.S49P 0.33 unknown(0) TCGA-AA-3510-01 13 73320194 73320194 T C BORA Missense_Mutation p.I284T 0.43 tolerated(0.11) possibly_damaging(0.804) TCGA-AA-3510-01 13 73590105 73590105 C A PIBF1 3'UTR 0.33 TCGA-AA-3510-01 13 77672278 77672278 G A MYCBP2 Missense_Mutation p.S2966L 0.31 probably_damaging(0.974) TCGA-AA-3510-01 13 77745750 77745750 A C MYCBP2 Missense_Mutation p.L1853V 0.30 possibly_damaging(0.787) TCGA-AA-3510-01 13 78317238 78317238 G A SLAIN1 Intron 0.10 TCGA-AA-3510-01 13 78493796 78493796 G A EDNRB 5'UTR 0.15 TCGA-AA-3510-01 13 79175622 79175622 C A POU4F1 Missense_Mutation p.K396N 0.28 deleterious(0.04) unknown(0) TCGA-AA-3510-01 13 84454570 84454570 T C SLITRK1 Missense_Mutation p.N358S 0.15 tolerated(0.06) possibly_damaging(0.502) TCGA-AA-3510-01 13 88331526 88331526 G T SLITRK5 3'UTR 0.41 TCGA-AA-3510-01 13 95257710 95257710 C A GPR180 Missense_Mutation p.L71I 0.14 deleterious(0.04) benign(0.038) TCGA-AA-3510-01 13 96212691 96212691 C A CLDN10 Missense_Mutation p.F146L 0.48 deleterious(0.03) benign(0.208) TCGA-AA-3510-01 13 98660315 98660315 C A IPO5 Missense_Mutation p.F591L 0.15 deleterious(0) benign(0.065) TCGA-AA-3510-01 13 99378650 99378650 G A SLC15A1 Silent p.C25C 0.20 TCGA-AA-3510-01 13 99947583 99947583 G A GPR183 Missense_Mutation p.R273C 0.39 tolerated(0.18) benign(0.007) TCGA-AA-3510-01 14 101348159 101348159 G A RTL1 Silent p.G989G 0.26 TCGA-AA-3510-01 14 101349772 101349772 C T RTL1 Missense_Mutation p.E452K 0.22 tolerated(0.17) benign(0.182) TCGA-AA-3510-01 14 101496004 101496004 C A MIR494 RNA 0.30 TCGA-AA-3510-01 14 101498377 101498377 C T MIR543 RNA 0.17 TCGA-AA-3510-01 14 101507778 101507778 G A MIR300 RNA 0.29 TCGA-AA-3510-01 14 101521785 101521785 C T MIR485 RNA 0.34 TCGA-AA-3510-01 14 101528394 101528394 G T MIR377 RNA 0.33 TCGA-AA-3510-01 14 103357701 103357701 G A TRAF3 Missense_Mutation p.A256T 0.46 tolerated(0.32) benign(0.038) TCGA-AA-3510-01 14 103410386 103410386 G A CDC42BPB Missense_Mutation p.A1417V 0.28 tolerated(0.06) benign(0.004) TCGA-AA-3510-01 14 103871547 103871547 C T MARK3 Silent p.I62I 0.35 TCGA-AA-3510-01 14 105207579 105207579 C T ADSSL1 Silent p.F307F 0.30 TCGA-AA-3510-01 14 105407539 105407539 G A AHNAK2 Missense_Mutation p.S4750L 0.43 benign(0.142) TCGA-AA-3510-01 14 105927236 105927236 C T MTA1 Silent p.F296F 0.29 TCGA-AA-3510-01 14 106321862 106321862 G A IGHM Silent p.F124F 0.31 TCGA-AA-3510-01 14 106691739 106691739 C A IGHV3-21 Missense_Mutation p.K95N 0.23 deleterious_low_confidence(0.04) benign(0.308) TCGA-AA-3510-01 14 106780533 106780533 C T IGHV4-28 Missense_Mutation p.A111T 0.30 deleterious(0.01) possibly_damaging(0.801) TCGA-AA-3510-01 14 106805642 106805642 C A IGHV4-31 Translation_Start_Site p.M1? 0.07 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-AA-3510-01 14 106829841 106829841 G A IGHV4-34 Missense_Mutation p.S41L 0.35 deleterious(0.03) benign(0.165) TCGA-AA-3510-01 14 106866656 106866656 G T IGHV3-38 Missense_Mutation p.P33H 0.32 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-AA-3510-01 14 19377678 19377678 C A OR11H12 Missense_Mutation p.L29I 0.27 deleterious(0.01) possibly_damaging(0.841) TCGA-AA-3510-01 14 20248820 20248820 C A OR4M1 Missense_Mutation p.F113L 0.09 tolerated(0.15) benign(0.028) TCGA-AA-3510-01 14 20389071 20389071 C A OR4K5 Missense_Mutation p.F102L 0.20 tolerated(0.06) benign(0.41) TCGA-AA-3510-01 14 20389444 20389444 C T OR4K5 Missense_Mutation p.L227F 0.25 tolerated(0.52) benign(0.002) TCGA-AA-3510-01 14 20502049 20502049 C T OR4K13 Missense_Mutation p.R290K 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3510-01 14 20585936 20585936 C A OR4K17 Missense_Mutation p.S124Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 14 20665493 20665493 T G OR11G2 5'Flank 0.08 TCGA-AA-3510-01 14 21623208 21623208 G A OR5AU1 Missense_Mutation p.A326V 0.35 deleterious(0) probably_damaging(0.921) TCGA-AA-3510-01 14 21762913 21762913 G A RPGRIP1 Missense_Mutation p.E55K 0.31 deleterious(0.04) benign(0.428) TCGA-AA-3510-01 14 21792870 21792870 C A RPGRIP1 Missense_Mutation p.S619Y 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-AA-3510-01 14 21816373 21816373 G T RPGRIP1 Missense_Mutation p.K1220N 0.24 tolerated(0.16) benign(0.002) TCGA-AA-3510-01 14 21991762 21991762 G T SALL2 Missense_Mutation p.F700L 0.26 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 14 22133459 22133459 C T OR4E2 Missense_Mutation p.L55F 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3510-01 14 23853752 23853752 G A MYH6 Missense_Mutation p.R1822W 0.24 deleterious(0) probably_damaging(0.988) TCGA-AA-3510-01 14 23892882 23892882 C T MYH7 Silent p.K991K 0.10 TCGA-AA-3510-01 14 24600819 24600819 G A RP11-468E2.6 Missense_Mutation p.R204Q 0.35 tolerated_low_confidence(0.05) benign(0.417) TCGA-AA-3510-01 14 24709172 24709172 G A TINF2 Intron 0.35 TCGA-AA-3510-01 14 24787019 24787019 G T LTB4R 3'UTR 0.23 TCGA-AA-3510-01 14 24841678 24841678 C T NFATC4 Silent p.L473L 0.39 TCGA-AA-3510-01 14 25101120 25101120 C T GZMB Missense_Mutation p.D182N 0.33 tolerated(1) benign(0.002) TCGA-AA-3510-01 14 25101144 25101144 C T GZMB Missense_Mutation p.E174K 0.21 tolerated(0.52) benign(0.001) TCGA-AA-3510-01 14 26917043 26917043 G A NOVA1 3'UTR 0.40 TCGA-AA-3510-01 14 29238017 29238017 A C FOXG1 3'UTR 0.33 TCGA-AA-3510-01 14 29238064 29238064 C T FOXG1 3'UTR 0.25 TCGA-AA-3510-01 14 30100051 30100051 G A PRKD1 Silent p.G523G 0.27 TCGA-AA-3510-01 14 30100186 30100186 T G PRKD1 Missense_Mutation p.K478N 0.15 tolerated(0.19) benign(0.038) TCGA-AA-3510-01 14 30107742 30107742 G A PRKD1 Missense_Mutation p.A313V 0.27 tolerated(0.16) possibly_damaging(0.479) TCGA-AA-3510-01 14 31062799 31062799 G A G2E3 Missense_Mutation p.R161Q 0.30 tolerated(0.09) benign(0.007) TCGA-AA-3510-01 14 31074996 31074996 G T G2E3 Missense_Mutation p.K432N 0.31 deleterious(0.01) probably_damaging(1) TCGA-AA-3510-01 14 31107338 31107338 G A SCFD1 Missense_Mutation p.R107Q 0.26 tolerated(0.7) benign(0.016) TCGA-AA-3510-01 14 32562460 32562460 C T ARHGAP5 Missense_Mutation p.S862L 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 14 33014971 33014971 G A AKAP6 Missense_Mutation p.R371Q 0.43 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 14 33292507 33292507 G T AKAP6 Missense_Mutation p.D1830Y 0.32 deleterious(0) possibly_damaging(0.907) TCGA-AA-3510-01 14 36982493 36982493 C T SFTA3 5'UTR 0.50 TCGA-AA-3510-01 14 37641637 37641637 C T SLC25A21-AS1 Missense_Mutation p.A16V 0.27 unknown(0) TCGA-AA-3510-01 14 38680181 38680181 C A SSTR1 3'UTR 0.29 TCGA-AA-3510-01 14 38724259 38724259 G A CLEC14A Silent p.V323V 0.42 TCGA-AA-3510-01 14 39706243 39706243 A C MIA2 Missense_Mutation p.D78A 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 14 39716532 39716532 C T MIA2 Missense_Mutation p.R252W 0.32 deleterious(0.02) possibly_damaging(0.707) TCGA-AA-3510-01 14 39796222 39796222 G A CTAGE5 Silent p.P614P 0.29 TCGA-AA-3510-01 14 39870502 39870502 A C FBXO33 Missense_Mutation p.F425C 0.28 deleterious(0.01) possibly_damaging(0.891) TCGA-AA-3510-01 14 42356861 42356861 C T LRFN5 Missense_Mutation p.L345F 0.33 tolerated(0.08) possibly_damaging(0.824) TCGA-AA-3510-01 14 45535890 45535890 C T FAM179B Missense_Mutation p.R1504C 0.27 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 14 45645389 45645389 C T FANCM Silent p.F1144F 0.29 TCGA-AA-3510-01 14 47601051 47601051 T G MDGA2 Splice_Site p.X265_splice 0.31 TCGA-AA-3510-01 14 51057659 51057659 G A ATL1 Missense_Mutation p.E95K 0.35 tolerated(0.78) benign(0.011) TCGA-AA-3510-01 14 52171626 52171626 C T FRMD6 Silent p.F177F 0.33 TCGA-AA-3510-01 14 52471323 52471323 C T C14orf166 3'UTR 0.50 TCGA-AA-3510-01 14 52471364 52471364 T G C14orf166 3'UTR 0.28 TCGA-AA-3510-01 14 52741619 52741619 C A PTGDR Missense_Mutation p.F339L 0.31 tolerated(0.73) possibly_damaging(0.76) TCGA-AA-3510-01 14 53150540 53150540 T G ERO1L Missense_Mutation p.K67T 0.20 tolerated(0.18) benign(0.027) TCGA-AA-3510-01 14 53175044 53175044 G T PSMC6 Nonsense_Mutation p.E49* 0.20 TCGA-AA-3510-01 14 53326297 53326297 G T FERMT2 Silent p.I628I 0.35 TCGA-AA-3510-01 14 54416649 54416649 C A BMP4 3'UTR 0.42 TCGA-AA-3510-01 14 54886803 54886803 T G CDKN3 3'UTR 0.15 TCGA-AA-3510-01 14 55241793 55241793 C T SAMD4A Silent p.F619F 0.39 TCGA-AA-3510-01 14 56233096 56233096 C T RP11-813I20.2 Intron 0.26 TCGA-AA-3510-01 14 57675371 57675371 G A EXOC5 Missense_Mutation p.R695C 0.26 deleterious(0.02) probably_damaging(0.945) TCGA-AA-3510-01 14 58910711 58910711 G A KIAA0586 Missense_Mutation p.E262K 0.38 tolerated(0.06) possibly_damaging(0.73) TCGA-AA-3510-01 14 59939615 59939615 T G L3HYPDH 3'UTR 0.46 TCGA-AA-3510-01 14 60616101 60616101 C A DHRS7 Missense_Mutation p.K314N 0.35 deleterious(0.03) benign(0.027) TCGA-AA-3510-01 14 60928089 60928089 G A C14orf39 Missense_Mutation p.S367L 0.46 tolerated(0.18) benign(0.001) TCGA-AA-3510-01 14 60938456 60938456 C A C14orf39 Nonsense_Mutation p.E109* 0.33 TCGA-AA-3510-01 14 60976382 60976382 C T SIX6 Missense_Mutation p.A89V 0.25 deleterious(0.05) benign(0.272) TCGA-AA-3510-01 14 61442479 61442479 C A TRMT5 Missense_Mutation p.M386I 0.29 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 14 63784426 63784426 C A GPHB5 RNA 0.31 TCGA-AA-3510-01 14 64488164 64488164 C T SYNE2 Silent p.I1761I 0.37 TCGA-AA-3510-01 14 64554422 64554422 C A SYNE2 Missense_Mutation p.L3840I 0.32 benign(0.126) TCGA-AA-3510-01 14 64938804 64938804 G T AKAP5 3'UTR 0.36 TCGA-AA-3510-01 14 64940474 64940474 T G AKAP5 3'UTR 0.33 TCGA-AA-3510-01 14 64990969 64990969 T G ZBTB1 3'UTR 0.34 TCGA-AA-3510-01 14 67841196 67841196 T G EIF2S1 Missense_Mutation p.L85V 0.36 deleterious(0) probably_damaging(0.972) TCGA-AA-3510-01 14 69346786 69346786 C T ACTN1 Missense_Mutation p.A725T 0.26 tolerated(0.23) benign(0.208) TCGA-AA-3510-01 14 69990944 69990944 A G PLEKHD1 Splice_Site p.X217_splice 0.39 TCGA-AA-3510-01 14 70515502 70515502 A C SLC8A3 Missense_Mutation p.F797V 0.19 deleterious(0) benign(0.045) TCGA-AA-3510-01 14 70515509 70515509 G A SLC8A3 Silent p.F794F 0.29 TCGA-AA-3510-01 14 70527605 70527605 C A SLC8A3 Missense_Mutation p.E612D 0.29 tolerated(0.52) benign(0.34) TCGA-AA-3510-01 14 70634325 70634325 C T SLC8A3 Missense_Mutation p.G272E 0.30 deleterious(0) possibly_damaging(0.585) TCGA-AA-3510-01 14 72196968 72196968 C T SIPA1L1 Missense_Mutation p.S1625L 0.18 tolerated(0.16) probably_damaging(0.986) TCGA-AA-3510-01 14 73444743 73444743 G A ZFYVE1 Silent p.I509I 0.30 TCGA-AA-3510-01 14 73959596 73959596 G A HEATR4 Intron 0.34 TCGA-AA-3510-01 14 74086126 74086126 A C ACOT6 Missense_Mutation p.K69N 0.26 deleterious(0.02) benign(0.264) TCGA-AA-3510-01 14 74969628 74969628 G A LTBP2 Missense_Mutation p.A1633V 0.41 deleterious(0.01) possibly_damaging(0.865) TCGA-AA-3510-01 14 74971551 74971551 C T LTBP2 Silent p.E1461E 0.33 TCGA-AA-3510-01 14 75248058 75248058 C T YLPM1 Silent p.L438L 0.33 TCGA-AA-3510-01 14 75302098 75302098 G A YLPM1 Missense_Mutation p.R2142Q 0.26 possibly_damaging(0.469) TCGA-AA-3510-01 14 75349302 75349302 C T DLST Silent p.C24C 0.33 TCGA-AA-3510-01 14 76117910 76117910 C A C14orf1 Missense_Mutation p.K137N 0.32 deleterious(0.01) possibly_damaging(0.797) TCGA-AA-3510-01 14 76964570 76964570 C T ESRRB Silent p.I357I 0.26 TCGA-AA-3510-01 14 77873149 77873149 G A NOXRED1 Silent p.S200S 0.45 TCGA-AA-3510-01 14 77942135 77942135 C T ISM2 Missense_Mutation p.A507T 0.31 deleterious(0) probably_damaging(0.948) TCGA-AA-3510-01 14 78198867 78198867 G A SNW1 Silent p.F284F 0.25 TCGA-AA-3510-01 14 80328383 80328383 C T NRXN3 3'UTR 0.31 TCGA-AA-3510-01 14 81422174 81422174 A G TSHR Silent p.L50L 0.20 TCGA-AA-3510-01 14 81743303 81743303 G A STON2 Silent p.Y784Y 0.41 TCGA-AA-3510-01 14 86088494 86088494 C T FLRT2 Silent p.D212D 0.31 TCGA-AA-3510-01 14 86088861 86088861 C T FLRT2 Missense_Mutation p.R335W 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 14 86089640 86089640 G T FLRT2 Missense_Mutation p.K594N 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 14 86091588 86091588 C A FLRT2 3'UTR 0.24 TCGA-AA-3510-01 14 86092290 86092290 C A FLRT2 3'UTR 0.08 TCGA-AA-3510-01 14 86093442 86093442 C A FLRT2 3'UTR 0.21 TCGA-AA-3510-01 14 86093500 86093500 A C FLRT2 3'UTR 0.24 TCGA-AA-3510-01 14 88658594 88658594 G A KCNK10 Missense_Mutation p.T281M 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 14 88892856 88892856 C T SPATA7 Missense_Mutation p.S218L 0.27 deleterious(0) possibly_damaging(0.852) TCGA-AA-3510-01 14 88903905 88903905 C T SPATA7 Silent p.F393F 0.36 TCGA-AA-3510-01 14 89123739 89123739 C A EML5 Nonsense_Mutation p.E1329* 0.30 TCGA-AA-3510-01 14 89220912 89220912 A C EML5 Missense_Mutation p.L101V 0.29 deleterious(0) probably_damaging(0.976) TCGA-AA-3510-01 14 91211181 91211181 C A TTC7B Missense_Mutation p.E177D 0.09 tolerated(0.11) benign(0.015) TCGA-AA-3510-01 14 91647668 91647668 G A C14orf159 Missense_Mutation p.S290N 0.19 deleterious(0) probably_damaging(0.976) TCGA-AA-3510-01 14 92249351 92249351 T G TC2N 3'UTR 0.20 TCGA-AA-3510-01 14 92597465 92597465 A C CPSF2 Missense_Mutation p.D46A 0.27 deleterious(0.05) benign(0.216) TCGA-AA-3510-01 14 93176022 93176022 G A LGMN Silent p.L339L 0.43 TCGA-AA-3510-01 14 93277968 93277968 G A GOLGA5 Missense_Mutation p.E397K 0.28 deleterious(0) possibly_damaging(0.805) TCGA-AA-3510-01 14 93392980 93392980 G A CHGA Missense_Mutation p.D42N 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 14 94007016 94007016 G A UNC79 Missense_Mutation p.E278K 0.11 deleterious(0) probably_damaging(0.938) TCGA-AA-3510-01 14 94007127 94007127 G A UNC79 Missense_Mutation p.D315N 0.24 tolerated(0.28) probably_damaging(0.998) TCGA-AA-3510-01 14 94048642 94048642 A G UNC79 Missense_Mutation p.K742E 0.25 tolerated_low_confidence(0.13) benign(0.015) TCGA-AA-3510-01 14 94069685 94069685 T C UNC79 Silent p.R1048R 0.30 TCGA-AA-3510-01 14 94084567 94084567 G T UNC79 Missense_Mutation p.K1241N 0.26 tolerated(0.14) probably_damaging(0.998) TCGA-AA-3510-01 14 94750481 94750481 T C SERPINA10 Missense_Mutation p.T386A 0.30 tolerated(1) benign(0) TCGA-AA-3510-01 14 94845794 94845794 A T SERPINA1 Intron 0.24 TCGA-AA-3510-01 14 94942549 94942549 C A SERPINA9 5'UTR 0.38 TCGA-AA-3510-01 14 95034505 95034505 C A SERPINA4 Missense_Mutation p.F321L 0.33 deleterious(0.03) probably_damaging(0.985) TCGA-AA-3510-01 14 95669195 95669195 C A CLMN Missense_Mutation p.D831Y 0.23 deleterious(0.02) possibly_damaging(0.45) TCGA-AA-3510-01 14 99865423 99865423 G A SETD3 Missense_Mutation p.R460C 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-AA-3510-01 15 100996109 100996109 T C CERS3 Missense_Mutation p.I330V 0.13 tolerated(0.27) benign(0.005) TCGA-AA-3510-01 15 101447437 101447437 G A ALDH1A3 Missense_Mutation p.D449N 0.31 tolerated(0.37) probably_damaging(0.946) TCGA-AA-3510-01 15 102496212 102496212 C A FAM138E RNA 0.60 TCGA-AA-3510-01 15 20170344 20170344 G A IGHV1OR15-9 Missense_Mutation p.T4I 0.21 tolerated(0.06) benign(0.052) TCGA-AA-3510-01 15 22868879 22868879 C T TUBGCP5 Silent p.V917V 0.09 TCGA-AA-3510-01 15 22960885 22960885 C T CYFIP1 Missense_Mutation p.A693V 0.46 deleterious(0) probably_damaging(0.962) TCGA-AA-3510-01 15 22990159 22990159 G A CYFIP1 Missense_Mutation p.A927T 0.11 tolerated(0.06) benign(0.292) TCGA-AA-3510-01 15 23194713 23194713 C A WHAMMP3 Intron 0.28 TCGA-AA-3510-01 15 23330495 23330495 T G HERC2P2 RNA 0.36 TCGA-AA-3510-01 15 24922166 24922166 T A NPAP1 Missense_Mutation p.D384E 0.26 deleterious(0.02) possibly_damaging(0.792) TCGA-AA-3510-01 15 24923738 24923738 G A NPAP1 Silent p.Q908Q 0.17 TCGA-AA-3510-01 15 25961895 25961895 C T ATP10A Silent p.P586P 0.26 TCGA-AA-3510-01 15 28377372 28377372 G A HERC2 Silent p.I4148I 0.35 TCGA-AA-3510-01 15 28508101 28508101 T C HERC2 Silent p.E695E 0.08 TCGA-AA-3510-01 15 29346288 29346288 C T APBA2 Silent p.S67S 0.35 TCGA-AA-3510-01 15 29346682 29346682 G A APBA2 Missense_Mutation p.E199K 0.32 tolerated_low_confidence(0.3) benign(0.018) TCGA-AA-3510-01 15 31042714 31042714 C T ARHGAP11B RNA 0.36 TCGA-AA-3510-01 15 33024642 33024642 A C GREM1 3'UTR 0.29 TCGA-AA-3510-01 15 33025631 33025631 G A GREM1 3'UTR 0.29 TCGA-AA-3510-01 15 33026045 33026045 G T GREM1 3'UTR 0.32 TCGA-AA-3510-01 15 33893711 33893711 G T RYR3 Missense_Mutation p.R627I 0.28 probably_damaging(1) TCGA-AA-3510-01 15 33938644 33938644 C A RYR3 Silent p.I1286I 0.36 TCGA-AA-3510-01 15 33961612 33961612 C T RYR3 Missense_Mutation p.R1893W 0.24 possibly_damaging(0.776) TCGA-AA-3510-01 15 34064194 34064194 T G RYR3 Missense_Mutation p.L2964V 0.11 probably_damaging(0.998) TCGA-AA-3510-01 15 34140527 34140527 C T RYR3 Silent p.I4511I 0.43 TCGA-AA-3510-01 15 34295368 34295368 C A AVEN Missense_Mutation p.D104Y 0.33 deleterious(0.01) benign(0.054) TCGA-AA-3510-01 15 34546764 34546764 G T SLC12A6 Silent p.I301I 0.28 TCGA-AA-3510-01 15 34638169 34638169 C T NUTM1 5'UTR 0.27 TCGA-AA-3510-01 15 35045028 35045028 C T GJD2 Missense_Mutation p.R206Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 15 35045216 35045216 C A GJD2 Missense_Mutation p.K143N 0.32 tolerated(0.3) benign(0.003) TCGA-AA-3510-01 15 35046666 35046666 C T GJD2 Silent p.E8E 0.44 TCGA-AA-3510-01 15 35742960 35742960 C A DPH6 Missense_Mutation p.R144I 0.42 deleterious(0) possibly_damaging(0.845) TCGA-AA-3510-01 15 37391700 37391700 C T MEIS2 5'UTR 0.39 TCGA-AA-3510-01 15 38782637 38782637 T G RASGRP1 3'UTR 0.34 TCGA-AA-3510-01 15 39545292 39545292 G A C15orf54 3'UTR 0.09 TCGA-AA-3510-01 15 39545808 39545808 T C C15orf54 3'UTR 0.30 TCGA-AA-3510-01 15 40318189 40318189 C T EIF2AK4 Silent p.F1467F 0.19 TCGA-AA-3510-01 15 40498414 40498414 C T BUB1B Silent p.S588S 0.21 TCGA-AA-3510-01 15 40591069 40591069 C T PLCB2 Silent p.P260P 0.46 TCGA-AA-3510-01 15 40661528 40661528 C T DISP2 Missense_Mutation p.A1072V 0.34 tolerated(1) benign(0.013) TCGA-AA-3510-01 15 40697993 40697993 C T IVD 5'Flank 0.28 TCGA-AA-3510-01 15 40849511 40849511 C T C15orf57 Missense_Mutation p.R111Q 0.43 tolerated(0.15) benign(0.04) TCGA-AA-3510-01 15 40916649 40916649 G A CASC5 Missense_Mutation p.R1422Q 0.25 tolerated(1) benign(0.001) TCGA-AA-3510-01 15 40917408 40917408 C A CASC5 Missense_Mutation p.S1675Y 0.26 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 15 41756981 41756981 G T RTF1 Missense_Mutation p.K225N 0.25 deleterious(0.01) benign(0.069) TCGA-AA-3510-01 15 41961840 41961840 G T MGA Missense_Mutation p.D250Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 15 42021441 42021442 - A MGA Frame_Shift_Ins p.E1249Rfs*25 0.32 TCGA-AA-3510-01 15 42028601 42028601 G A MGA Missense_Mutation p.R1380Q 0.33 tolerated(0.07) possibly_damaging(0.772) TCGA-AA-3510-01 15 42042106 42042106 T G MGA Missense_Mutation p.L2101V 0.37 tolerated_low_confidence(0.83) benign(0.001) TCGA-AA-3510-01 15 42143119 42143119 C A SPTBN5 Missense_Mutation p.E3618D 0.39 benign(0.382) TCGA-AA-3510-01 15 42144485 42144485 C T SPTBN5 Silent p.Q3493Q 0.41 TCGA-AA-3510-01 15 42162668 42162668 G T SPTBN5 Silent p.L1846L 0.17 TCGA-AA-3510-01 15 43237383 43237383 G T UBR1 3'UTR 0.30 TCGA-AA-3510-01 15 43531095 43531095 G T TGM5 Missense_Mutation p.S422Y 0.31 tolerated(0.12) possibly_damaging(0.553) TCGA-AA-3510-01 15 43571411 43571411 G T TGM7 Silent p.L581L 0.25 TCGA-AA-3510-01 15 43817339 43817339 G A MAP1A Missense_Mutation p.G1223D 0.10 probably_damaging(0.989) TCGA-AA-3510-01 15 43927974 43927974 G A CATSPER2 Missense_Mutation p.R358W 0.26 deleterious(0.01) benign(0.058) TCGA-AA-3510-01 15 44028388 44028388 G A RNU6-354P 5'Flank 0.31 TCGA-AA-3510-01 15 44066403 44066403 G T ELL3 Silent p.R339R 0.32 TCGA-AA-3510-01 15 44776455 44776455 A C CTDSPL2 Missense_Mutation p.I74L 0.08 tolerated_low_confidence(0.49) benign(0.001) TCGA-AA-3510-01 15 44912407 44912407 T G SPG11 Missense_Mutation p.I939L 0.11 deleterious(0.01) benign(0.274) TCGA-AA-3510-01 15 45007719 45007719 G T B2M Nonsense_Mutation p.E56* 0.34 TCGA-AA-3510-01 15 45007752 45007752 G T B2M Nonsense_Mutation p.E67* 0.28 TCGA-AA-3510-01 15 45390235 45390235 G T DUOX2 Missense_Mutation p.F1179L 0.36 tolerated(0.06) possibly_damaging(0.454) TCGA-AA-3510-01 15 45399629 45399629 C T DUOX2 Missense_Mutation p.R536Q 0.32 deleterious(0.03) benign(0.058) TCGA-AA-3510-01 15 45470489 45470489 C A SHF Missense_Mutation p.D107Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 15 45567732 45567732 T C SLC28A2 3'UTR 0.30 TCGA-AA-3510-01 15 48056504 48056504 T A SEMA6D Splice_Site p.X366_splice 0.31 TCGA-AA-3510-01 15 48062819 48062819 C T SEMA6D Nonsense_Mutation p.R687* 0.31 TCGA-AA-3510-01 15 48431208 48431208 G T SLC24A5 Missense_Mutation p.R305I 0.38 tolerated(0.13) benign(0.008) TCGA-AA-3510-01 15 48451808 48451808 A G MYEF2 Splice_Site p.X239_splice 0.38 TCGA-AA-3510-01 15 48758041 48758041 G A FBN1 Missense_Mutation p.L1588F 0.16 probably_damaging(1) TCGA-AA-3510-01 15 49048485 49048485 C T CEP152 Missense_Mutation p.R987Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 15 49081162 49081162 C T CEP152 Missense_Mutation p.E337K 0.30 deleterious(0) possibly_damaging(0.705) TCGA-AA-3510-01 15 49135722 49135722 C T SHC4 Missense_Mutation p.R456Q 0.26 tolerated(0.2) benign(0.005) TCGA-AA-3510-01 15 49293278 49293278 G T SECISBP2L Missense_Mutation p.L682I 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3510-01 15 50209138 50209138 C A ATP8B4 Nonsense_Mutation p.E712* 0.36 TCGA-AA-3510-01 15 50526076 50526076 C T SLC27A2 Missense_Mutation p.R523C 0.29 deleterious(0) probably_damaging(0.932) TCGA-AA-3510-01 15 50782034 50782034 G A USP8 Missense_Mutation p.E643K 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-AA-3510-01 15 50838859 50838859 G A USP50 5'UTR 0.24 TCGA-AA-3510-01 15 51830542 51830542 C T DMXL2 Missense_Mutation p.E405K 0.24 deleterious(0) possibly_damaging(0.769) TCGA-AA-3510-01 15 52252142 52252142 C T LEO1 Missense_Mutation p.D372N 0.39 deleterious(0.03) benign(0.271) TCGA-AA-3510-01 15 52338757 52338757 G T MAPK6 Missense_Mutation p.V34F 0.32 deleterious(0) benign(0.063) TCGA-AA-3510-01 15 53081428 53081428 G A ONECUT1 Silent p.F218F 0.12 TCGA-AA-3510-01 15 54307595 54307595 G T UNC13C Missense_Mutation p.R832I 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3510-01 15 55651546 55651546 G T CCPG1 Intron 0.25 TCGA-AA-3510-01 15 55789929 55789929 C A DYX1C1 Missense_Mutation p.E84D 0.22 tolerated(0.27) benign(0.033) TCGA-AA-3510-01 15 55838657 55838657 T C PYGO1 Missense_Mutation p.N275S 0.37 tolerated(0.34) benign(0.012) TCGA-AA-3510-01 15 55965738 55965738 C T PRTG Silent p.E561E 0.37 TCGA-AA-3510-01 15 56258734 56258734 C T NEDD4 Missense_Mutation p.R19Q 0.36 tolerated(0.05) benign(0.014) TCGA-AA-3510-01 15 56385410 56385410 G T RFX7 3'UTR 0.22 TCGA-AA-3510-01 15 56385630 56385630 A C RFX7 Missense_Mutation p.I1432M 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.655) TCGA-AA-3510-01 15 56390435 56390435 T C RFX7 Silent p.E317E 0.07 TCGA-AA-3510-01 15 58004377 58004377 G T POLR2M Missense_Mutation p.Q318H 0.12 deleterious(0) probably_damaging(0.967) TCGA-AA-3510-01 15 58007094 58007094 A C POLR2M 3'UTR 0.36 TCGA-AA-3510-01 15 58247340 58247340 G T ALDH1A2 3'UTR 0.24 TCGA-AA-3510-01 15 58936103 58936103 G T ADAM10 Missense_Mutation p.F270L 0.30 deleterious(0) possibly_damaging(0.51) TCGA-AA-3510-01 15 59510159 59510159 C T MYO1E Silent p.E346E 0.21 TCGA-AA-3510-01 15 60297609 60297609 G T FOXB1 Missense_Mutation p.Q149H 0.33 tolerated(0.12) possibly_damaging(0.453) TCGA-AA-3510-01 15 62217669 62217669 C A VPS13C Nonsense_Mutation p.E2199* 0.25 TCGA-AA-3510-01 15 62333560 62333560 T G VPS13C Missense_Mutation p.E50D 0.36 tolerated(0.13) possibly_damaging(0.566) TCGA-AA-3510-01 15 62362768 62362768 C T C2CD4A 3'UTR 0.33 TCGA-AA-3510-01 15 62362806 62362806 T G C2CD4A 3'UTR 0.31 TCGA-AA-3510-01 15 63102180 63102180 C T TLN2 Silent p.F2240F 0.39 TCGA-AA-3510-01 15 63446102 63446102 T G RPS27L 3'UTR 0.16 TCGA-AA-3510-01 15 65447302 65447302 G A CLPX Missense_Mutation p.R477W 0.29 deleterious(0.03) probably_damaging(0.983) TCGA-AA-3510-01 15 65782575 65782575 C A DPP8 Nonsense_Mutation p.E276* 0.31 TCGA-AA-3510-01 15 66729175 66729175 G A MAP2K1 Missense_Mutation p.G128D 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 15 66791814 66791814 C A RPL4 Missense_Mutation p.K405N 0.30 tolerated_low_confidence(0.12) unknown(0) TCGA-AA-3510-01 15 66795237 66795237 G A RPL4 Intron 0.31 TCGA-AA-3510-01 15 67459118 67459118 G T SMAD3 Missense_Mutation p.E178D 0.42 tolerated(0.45) benign(0.002) TCGA-AA-3510-01 15 67473578 67473578 G A SMAD3 Splice_Site p.X220_splice 0.56 TCGA-AA-3510-01 15 67473635 67473635 G A SMAD3 Missense_Mutation p.E239K 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 15 68583135 68583135 G A FEM1B Missense_Mutation p.R480K 0.33 tolerated(0.31) possibly_damaging(0.754) TCGA-AA-3510-01 15 68623421 68623421 C T ITGA11 Missense_Mutation p.G600D 0.19 deleterious(0.01) benign(0.063) TCGA-AA-3510-01 15 68937660 68937660 C T CORO2B Silent p.S59S 0.28 TCGA-AA-3510-01 15 70959687 70959687 A G UACA Silent p.V1112V 0.36 TCGA-AA-3510-01 15 71341895 71341895 C T LRRC49 Missense_Mutation p.R674C 0.25 deleterious(0.02) possibly_damaging(0.828) TCGA-AA-3510-01 15 72143673 72143673 G A MYO9A Missense_Mutation p.R2168C 0.37 tolerated(0.12) possibly_damaging(0.908) TCGA-AA-3510-01 15 73635748 73635748 C T HCN4 Missense_Mutation p.R396Q 0.29 deleterious(0) unknown(0) TCGA-AA-3510-01 15 74005277 74005277 G T CD276 Missense_Mutation p.D529Y 0.36 deleterious_low_confidence(0) benign(0.426) TCGA-AA-3510-01 15 74924941 74924941 C T EDC3 3'UTR 0.41 TCGA-AA-3510-01 15 75189916 75189916 G A MPI Missense_Mutation p.V373I 0.41 tolerated(0.94) benign(0.052) TCGA-AA-3510-01 15 75684967 75684967 A C SIN3A Missense_Mutation p.L823V 0.32 deleterious(0) benign(0.376) TCGA-AA-3510-01 15 75949424 75949424 G T SNX33 Missense_Mutation p.M531I 0.17 tolerated(1) benign(0.007) TCGA-AA-3510-01 15 75968066 75968066 C T CSPG4 Missense_Mutation p.R2265H 0.36 deleterious(0) probably_damaging(0.925) TCGA-AA-3510-01 15 75968120 75968120 C T CSPG4 Missense_Mutation p.R2247Q 0.39 tolerated(0.06) benign(0.197) TCGA-AA-3510-01 15 76235754 76235754 G A NRG4 3'UTR 0.24 TCGA-AA-3510-01 15 76578016 76578016 C T ETFA Missense_Mutation p.R209Q 0.24 deleterious(0) probably_damaging(0.97) TCGA-AA-3510-01 15 77057340 77057340 C T SCAPER Missense_Mutation p.E563K 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3510-01 15 78211608 78211608 C T RP11-114H24.7 Intron 0.39 TCGA-AA-3510-01 15 78635940 78635940 G A CRABP1 Missense_Mutation p.D117N 0.40 deleterious(0.02) benign(0.076) TCGA-AA-3510-01 15 79264266 79264266 A C RASGRF1 Missense_Mutation p.I1224S 0.26 deleterious(0) probably_damaging(0.979) TCGA-AA-3510-01 15 79341902 79341902 C T RASGRF1 Missense_Mutation p.R187H 0.29 deleterious(0) possibly_damaging(0.765) TCGA-AA-3510-01 15 79590139 79590139 C A ANKRD34C 3'UTR 0.51 TCGA-AA-3510-01 15 79750075 79750075 G A KIAA1024 Missense_Mutation p.S529N 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 15 79755631 79755631 G A KIAA1024 Missense_Mutation p.D841N 0.23 deleterious(0.01) possibly_damaging(0.501) TCGA-AA-3510-01 15 81046694 81046694 G T ABHD17C Nonsense_Mutation p.E325* 0.27 TCGA-AA-3510-01 15 81592758 81592758 G T IL16 Missense_Mutation p.D1031Y 0.42 deleterious(0) possibly_damaging(0.615) TCGA-AA-3510-01 15 81637190 81637190 T C TMC3 Missense_Mutation p.T479A 0.39 tolerated(0.14) benign(0.002) TCGA-AA-3510-01 15 81637352 81637352 C T TMC3 Missense_Mutation p.E425K 0.32 deleterious(0.03) benign(0.065) TCGA-AA-3510-01 15 82336139 82336139 C T MEX3B Missense_Mutation p.E358K 0.37 deleterious(0.01) unknown(0) TCGA-AA-3510-01 15 83215979 83215979 G A CPEB1 Missense_Mutation p.R470C 0.30 deleterious(0.01) probably_damaging(1) TCGA-AA-3510-01 15 83296034 83296034 G A CPEB1 Nonsense_Mutation p.R34* 0.27 TCGA-AA-3510-01 15 83330955 83330955 G T AP3B2 Missense_Mutation p.F942L 0.23 deleterious(0.01) benign(0.153) TCGA-AA-3510-01 15 83658716 83658716 G A FAM103A1 Missense_Mutation p.R85Q 0.32 deleterious(0.03) benign(0.053) TCGA-AA-3510-01 15 85401248 85401248 A G ALPK3 Silent p.G1295G 0.40 TCGA-AA-3510-01 15 85634393 85634393 C A PDE8A Nonsense_Mutation p.S278* 0.33 TCGA-AA-3510-01 15 86262492 86262492 T G AKAP13 Missense_Mutation p.S2067A 0.28 tolerated(0.08) possibly_damaging(0.55) TCGA-AA-3510-01 15 86270660 86270660 G T AKAP13 Missense_Mutation p.K2355N 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 15 86312616 86312616 C A KLHL25 Missense_Mutation p.K142N 0.50 tolerated(0.13) possibly_damaging(0.596) TCGA-AA-3510-01 15 88576086 88576086 A G NTRK3 Splice_Site p.X529_splice 0.17 TCGA-AA-3510-01 15 89056250 89056250 C T DET1 Missense_Mutation p.A540T 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3510-01 15 89079581 89079581 A T DET1 5'UTR 0.43 TCGA-AA-3510-01 15 89442728 89442728 C A MFGE8 Missense_Mutation p.K354N 0.49 deleterious(0.05) probably_damaging(0.97) TCGA-AA-3510-01 15 89449895 89449895 C T MFGE8 Missense_Mutation p.E168K 0.33 tolerated(1) benign(0.002) TCGA-AA-3510-01 15 90118964 90118964 C A TICRR Missense_Mutation p.F49L 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 15 90188375 90188375 C T KIF7 Missense_Mutation p.R687Q 0.64 tolerated(0.43) benign(0.001) TCGA-AA-3510-01 15 91424939 91424939 G A FURIN Missense_Mutation p.R739H 0.33 tolerated(0.08) possibly_damaging(0.862) TCGA-AA-3510-01 15 91434783 91434783 G T FES Splice_Site p.X511_splice 0.23 TCGA-AA-3510-01 15 91769602 91769602 G A SV2B Missense_Mutation p.E37K 0.30 deleterious(0) probably_damaging(0.95) TCGA-AA-3510-01 15 94883438 94883438 G A MCTP2 Missense_Mutation p.R264Q 0.40 tolerated(0.09) probably_damaging(0.957) TCGA-AA-3510-01 15 99511764 99511764 C T PGPEP1L Silent p.K178K 0.32 TCGA-AA-3510-01 15 99670218 99670218 G A SYNM Silent p.Q550Q 0.28 TCGA-AA-3510-01 15 99828019 99828019 C T LRRC28 Missense_Mutation p.A83V 0.28 deleterious(0.02) benign(0.414) TCGA-AA-3510-01 15 99892619 99892619 A G LRRC28 Missense_Mutation p.N213S 0.25 deleterious(0.04) possibly_damaging(0.798) TCGA-AA-3510-01 16 10274097 10274097 C T GRIN2A Missense_Mutation p.E58K 0.41 deleterious(0.02) benign(0.028) TCGA-AA-3510-01 16 12136879 12136879 G A SNX29 Missense_Mutation p.E125K 0.25 deleterious(0) benign(0.422) TCGA-AA-3510-01 16 1250535 1250535 C T CACNA1H Silent p.F361F 0.38 TCGA-AA-3510-01 16 1255158 1255158 C A CACNA1H Missense_Mutation p.F832L 0.19 deleterious(0) benign(0.238) TCGA-AA-3510-01 16 1266966 1266966 T G CACNA1H Missense_Mutation p.F1760C 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 16 1278689 1278689 G T TPSB2 Nonsense_Mutation p.Y262* 0.14 TCGA-AA-3510-01 16 1292202 1292202 C A TPSAB1 Nonsense_Mutation p.Y263* 0.13 TCGA-AA-3510-01 16 1396937 1396937 G A BAIAP3 Missense_Mutation p.R946H 0.32 deleterious(0) benign(0.105) TCGA-AA-3510-01 16 14026058 14026058 C T ERCC4 Nonsense_Mutation p.R340* 0.38 TCGA-AA-3510-01 16 14721035 14721035 C T PARN Silent p.T85T 0.33 TCGA-AA-3510-01 16 14983020 14983020 C A NOMO1 Missense_Mutation p.S1131Y 0.05 deleterious(0) benign(0.263) TCGA-AA-3510-01 16 15724228 15724228 G T KIAA0430 Missense_Mutation p.F495L 0.38 tolerated(0.61) benign(0.115) TCGA-AA-3510-01 16 16230342 16230342 T C ABCC1 Missense_Mutation p.V1378A 0.31 deleterious(0) possibly_damaging(0.787) TCGA-AA-3510-01 16 1747850 1747850 C T HN1L Missense_Mutation p.S125L 0.33 tolerated(0.35) benign(0.006) TCGA-AA-3510-01 16 1910449 1910449 C A MEIOB Missense_Mutation p.R96I 0.16 tolerated(0.07) benign(0.016) TCGA-AA-3510-01 16 19127869 19127869 C T ITPRIPL2 3'UTR 0.33 TCGA-AA-3510-01 16 19509248 19509248 G A TMC5 Missense_Mutation p.R994Q 0.15 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-AA-3510-01 16 19883244 19883244 G A GPRC5B Silent p.F308F 0.18 TCGA-AA-3510-01 16 20327320 20327320 C T GP2 Missense_Mutation p.D490N 0.36 tolerated(0.43) benign(0.012) TCGA-AA-3510-01 16 20335551 20335551 G A GP2 Missense_Mutation p.S41L 0.29 deleterious(0) possibly_damaging(0.505) TCGA-AA-3510-01 16 20387471 20387471 C A PDILT Missense_Mutation p.Q154H 0.22 tolerated(0.18) benign(0.023) TCGA-AA-3510-01 16 20702428 20702428 C T ACSM1 Missense_Mutation p.R28H 0.27 tolerated(0.64) benign(0.006) TCGA-AA-3510-01 16 20749077 20749077 C T THUMPD1 Missense_Mutation p.R203Q 0.16 tolerated(0.08) probably_damaging(0.942) TCGA-AA-3510-01 16 20975543 20975543 C A DNAH3 Missense_Mutation p.K3221N 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 16 20986635 20986635 C A DNAH3 Nonsense_Mutation p.E2727* 0.30 TCGA-AA-3510-01 16 20999096 20999096 C T DNAH3 Silent p.S2267S 0.29 TCGA-AA-3510-01 16 21061269 21061269 C A DNAH3 Nonsense_Mutation p.E1437* 0.45 TCGA-AA-3510-01 16 21245153 21245153 G A ANKS4B Missense_Mutation p.G32D 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 16 21261491 21261491 A C ANKS4B Missense_Mutation p.K202Q 0.36 tolerated(0.05) benign(0.1) TCGA-AA-3510-01 16 21270123 21270123 A C CRYM Missense_Mutation p.D308E 0.35 tolerated(0.29) benign(0.007) TCGA-AA-3510-01 16 21726313 21726313 C A OTOA Missense_Mutation p.S443Y 0.35 deleterious(0) probably_damaging(0.923) TCGA-AA-3510-01 16 21728295 21728295 C A OTOA Missense_Mutation p.S519Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-AA-3510-01 16 22149761 22149761 G T VWA3A Missense_Mutation p.K740N 0.33 tolerated(0.27) benign(0.039) TCGA-AA-3510-01 16 22157602 22157602 T C VWA3A Missense_Mutation p.Y926H 0.24 deleterious(0) probably_damaging(0.987) TCGA-AA-3510-01 16 2233732 2233732 C A CASKIN1 Missense_Mutation p.G515V 0.23 probably_damaging(1) TCGA-AA-3510-01 16 22926818 22926818 G T HS3ST2 Nonsense_Mutation p.E347* 0.29 TCGA-AA-3510-01 16 23503120 23503120 T C GGA2 Missense_Mutation p.Y118C 0.42 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 16 23646516 23646516 A C PALB2 Missense_Mutation p.L451V 0.10 tolerated(0.43) benign(0.06) TCGA-AA-3510-01 16 24372779 24372779 C T CACNG3 Silent p.F181F 0.19 TCGA-AA-3510-01 16 24870051 24870051 C T SLC5A11 Silent p.I29I 0.15 TCGA-AA-3510-01 16 2522339 2522339 G T NTN3 Missense_Mutation p.D213Y 0.36 deleterious(0) probably_damaging(0.992) TCGA-AA-3510-01 16 27523104 27523104 G A GTF3C1 Silent p.F364F 0.29 TCGA-AA-3510-01 16 27712916 27712916 C T KIAA0556 Missense_Mutation p.P396S 0.39 tolerated(0.2) benign(0.006) TCGA-AA-3510-01 16 28167540 28167540 C A XPO6 Nonsense_Mutation p.E318* 0.36 TCGA-AA-3510-01 16 28596245 28596245 G A CCDC101 Silent p.S29S 0.37 TCGA-AA-3510-01 16 2882081 2882081 G A ZG16B Nonsense_Mutation p.W183* 0.11 TCGA-AA-3510-01 16 28892325 28892325 C T ATP2A1 Silent p.I103I 0.47 TCGA-AA-3510-01 16 29810042 29810042 T C KIF22 Missense_Mutation p.S175P 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3510-01 16 29906661 29906661 G A SEZ6L2 Missense_Mutation p.R258W 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 16 30456013 30456013 T C SEPHS2 Missense_Mutation p.I346V 0.34 benign(0.047) TCGA-AA-3510-01 16 3097484 3097484 G T MMP25 Missense_Mutation p.E56D 0.14 tolerated(0.1) possibly_damaging(0.609) TCGA-AA-3510-01 16 31138380 31138380 A G KAT8 Missense_Mutation p.T163A 0.32 tolerated(0.17) benign(0.081) TCGA-AA-3510-01 16 31390893 31390893 G A ITGAX Missense_Mutation p.E932K 0.40 deleterious(0.05) benign(0.174) TCGA-AA-3510-01 16 31926190 31926190 G A ZNF267 Missense_Mutation p.R207Q 0.13 tolerated(0.92) benign(0) TCGA-AA-3510-01 16 31927273 31927273 G A ZNF267 Missense_Mutation p.R568Q 0.44 tolerated(0.12) probably_damaging(0.97) TCGA-AA-3510-01 16 320544 320544 T C RGS11 Missense_Mutation p.H395R 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 16 32266498 32266498 A C TP53TG3D 3'UTR 0.33 TCGA-AA-3510-01 16 324074 324074 C T RGS11 Missense_Mutation p.R133Q 0.38 tolerated(0.07) benign(0.007) TCGA-AA-3510-01 16 32894133 32894133 C T RP11-989E6.3 5'Flank 0.17 TCGA-AA-3510-01 16 3336182 3336182 G A ZNF263 Intron 0.28 TCGA-AA-3510-01 16 3406858 3406858 G A OR2C1 Silent p.G306G 0.27 TCGA-AA-3510-01 16 3486819 3486819 G A ZNF597 Missense_Mutation p.P294S 0.41 tolerated(0.7) benign(0.002) TCGA-AA-3510-01 16 3565585 3565585 G T CLUAP1 Missense_Mutation p.E191D 0.12 tolerated(0.76) benign(0.001) TCGA-AA-3510-01 16 3599167 3599167 C T NLRC3 Missense_Mutation p.A906T 0.15 tolerated(0.76) benign(0.001) TCGA-AA-3510-01 16 3807914 3807914 G A CREBBP Missense_Mutation p.R1169C 0.24 unknown(0) TCGA-AA-3510-01 16 47117649 47117649 G A NETO2 Missense_Mutation p.T354I 0.35 deleterious(0.01) possibly_damaging(0.774) TCGA-AA-3510-01 16 47143460 47143460 G A NETO2 Nonsense_Mutation p.R273* 0.08 TCGA-AA-3510-01 16 48303977 48303977 G A LONP2 Missense_Mutation p.A345T 0.10 deleterious(0) possibly_damaging(0.773) TCGA-AA-3510-01 16 48587562 48587562 G T N4BP1 Missense_Mutation p.F636L 0.38 tolerated(0.08) possibly_damaging(0.656) TCGA-AA-3510-01 16 4909958 4909958 T G UBN1 Missense_Mutation p.F220L 0.41 tolerated(0.58) possibly_damaging(0.872) TCGA-AA-3510-01 16 49313393 49313393 G A CBLN1 Silent p.Y168Y 0.29 TCGA-AA-3510-01 16 49669794 49669794 C T ZNF423 Missense_Mutation p.G1090D 0.41 tolerated(0.55) benign(0.375) TCGA-AA-3510-01 16 50257142 50257142 G T PAPD5 Nonsense_Mutation p.E394* 0.24 TCGA-AA-3510-01 16 5097914 5097914 G A C16orf89 Missense_Mutation p.S307L 0.17 tolerated(1) benign(0) TCGA-AA-3510-01 16 51176039 51176039 G T SALL1 Missense_Mutation p.Q32K 0.35 tolerated(0.66) benign(0.034) TCGA-AA-3510-01 16 52498061 52498061 C T TOX3 Missense_Mutation p.E65K 0.33 deleterious(0) probably_damaging(0.981) TCGA-AA-3510-01 16 53190896 53190896 A C CHD9 Missense_Mutation p.N299H 0.35 possibly_damaging(0.725) TCGA-AA-3510-01 16 53243524 53243524 G A CHD9 Missense_Mutation p.R528H 0.45 probably_damaging(0.999) TCGA-AA-3510-01 16 53404712 53404712 A C RP11-44F14.1 RNA 0.32 TCGA-AA-3510-01 16 53670374 53670374 G A RPGRIP1L Missense_Mutation p.P1091S 0.34 tolerated(0.25) benign(0.005) TCGA-AA-3510-01 16 54319802 54319802 G A IRX3 Missense_Mutation p.S54L 0.75 tolerated(0.17) benign(0.019) TCGA-AA-3510-01 16 55364273 55364273 C A IRX6 3'UTR 0.25 TCGA-AA-3510-01 16 55855434 55855434 C T CES1 Splice_Site p.X180_splice 0.46 TCGA-AA-3510-01 16 56920892 56920892 C T SLC12A3 Missense_Mutation p.L689F 0.40 tolerated(0.19) benign(0.018) TCGA-AA-3510-01 16 57993968 57993968 C T CNGB1 Silent p.A195A 0.30 TCGA-AA-3510-01 16 58078951 58078951 C T MMP15 Silent p.F537F 0.27 TCGA-AA-3510-01 16 58552117 58552117 C T SETD6 Missense_Mutation p.R319C 0.26 tolerated(0.19) benign(0.02) TCGA-AA-3510-01 16 58565906 58565906 G A CNOT1 Missense_Mutation p.R2045W 0.43 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 16 58573746 58573746 G A CNOT1 Nonsense_Mutation p.R1640* 0.31 TCGA-AA-3510-01 16 61851384 61851384 T G CDH8 Silent p.R426R 0.44 TCGA-AA-3510-01 16 64981450 64981450 C A CDH11 3'UTR 0.11 TCGA-AA-3510-01 16 65016136 65016136 C T CDH11 Silent p.P356P 0.40 TCGA-AA-3510-01 16 66803886 66803886 C A CCDC79 Missense_Mutation p.K533N 0.38 tolerated(0.07) benign(0.001) TCGA-AA-3510-01 16 66806588 66806588 C A CCDC79 Missense_Mutation p.K392N 0.40 tolerated(0.09) benign(0.007) TCGA-AA-3510-01 16 66920127 66920127 G A PDP2 3'UTR 0.36 TCGA-AA-3510-01 16 67401160 67401160 A T LRRC36 Missense_Mutation p.N332I 0.08 deleterious_low_confidence(0) possibly_damaging(0.667) TCGA-AA-3510-01 16 67702152 67702152 C T C16orf86 Silent p.N201N 0.28 TCGA-AA-3510-01 16 67911505 67911505 C T EDC4 Silent p.S245S 0.44 TCGA-AA-3510-01 16 67977894 67977894 C T LCAT Silent p.T37T 0.09 TCGA-AA-3510-01 16 68014375 68014375 G A DPEP3 5'UTR 0.60 TCGA-AA-3510-01 16 68191787 68191787 G A NFATC3 Missense_Mutation p.E473K 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 16 70172870 70172870 T G PDPR Missense_Mutation p.F420C 0.19 deleterious(0) probably_damaging(0.969) TCGA-AA-3510-01 16 70359579 70359579 C T DDX19B Nonsense_Mutation p.R199* 0.34 TCGA-AA-3510-01 16 70818712 70818712 T C VAC14 Silent p.K151K 0.38 TCGA-AA-3510-01 16 70926358 70926358 G T HYDIN Nonsense_Mutation p.S3108* 0.06 TCGA-AA-3510-01 16 71163622 71163622 C T HYDIN Missense_Mutation p.R383Q 0.19 benign(0.002) TCGA-AA-3510-01 16 71668220 71668220 C T MARVELD3 Intron 0.38 TCGA-AA-3510-01 16 71712661 71712661 A C PHLPP2 Nonsense_Mutation p.L422* 0.28 TCGA-AA-3510-01 16 71779388 71779388 C T AP1G1 Silent p.Q623Q 0.32 TCGA-AA-3510-01 16 71890951 71890951 C A ATXN1L 3'UTR 0.35 TCGA-AA-3510-01 16 72090442 72090442 G A HP Silent p.P34P 0.14 TCGA-AA-3510-01 16 72110819 72110819 G A HPR Missense_Mutation p.D296N 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 16 72831388 72831388 C A ZFHX3 Missense_Mutation p.Q1731H 0.31 possibly_damaging(0.644) TCGA-AA-3510-01 16 74401 74401 C T WASH4P 5'Flank 0.48 TCGA-AA-3510-01 16 75203619 75203619 G T ZFP1 Missense_Mutation p.R204I 0.41 deleterious(0) probably_damaging(0.952) TCGA-AA-3510-01 16 75338935 75338935 G A CFDP1 Nonsense_Mutation p.R266* 0.41 TCGA-AA-3510-01 16 76483664 76483664 G T CNTNAP4 Intron 0.37 TCGA-AA-3510-01 16 76569605 76569605 G A CNTNAP4 Silent p.G900G 0.46 TCGA-AA-3510-01 16 76573642 76573642 A C CNTNAP4 Missense_Mutation p.N1010H 0.23 tolerated(0.17) possibly_damaging(0.797) TCGA-AA-3510-01 16 77328833 77328833 C T ADAMTS18 Missense_Mutation p.G998E 0.32 deleterious(0) probably_damaging(0.992) TCGA-AA-3510-01 16 77359846 77359846 A C ADAMTS18 Missense_Mutation p.F650C 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3510-01 16 77369795 77369795 G A ADAMTS18 Missense_Mutation p.R573W 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 16 77397716 77397716 G T ADAMTS18 Missense_Mutation p.L347I 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-AA-3510-01 16 81051405 81051405 C T CENPN Missense_Mutation p.S107L 0.34 tolerated(0.06) benign(0.077) TCGA-AA-3510-01 16 81087554 81087554 C T RP11-303E16.5 5'Flank 0.20 TCGA-AA-3510-01 16 81087563 81087563 C T RP11-303E16.5 5'Flank 0.18 TCGA-AA-3510-01 16 815170 815170 G A MSLN Missense_Mutation p.D191N 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3510-01 16 81922846 81922846 G T PLCG2 Nonsense_Mutation p.E279* 0.31 TCGA-AA-3510-01 16 81954827 81954827 G A PLCG2 Missense_Mutation p.D754N 0.33 tolerated(0.54) benign(0.037) TCGA-AA-3510-01 16 81990311 81990311 G T PLCG2 Missense_Mutation p.E1194D 0.45 tolerated(0.48) probably_damaging(0.996) TCGA-AA-3510-01 16 84793794 84793794 C T USP10 Silent p.I489I 0.34 TCGA-AA-3510-01 16 84797808 84797808 G A USP10 Missense_Mutation p.V591I 0.10 tolerated(0.53) benign(0.08) TCGA-AA-3510-01 16 85942753 85942753 G A IRF8 Missense_Mutation p.R111Q 0.40 tolerated(0.07) probably_damaging(0.995) TCGA-AA-3510-01 16 86612345 86612345 G A FOXL1 Missense_Mutation p.D6N 0.40 tolerated(1) benign(0.001) TCGA-AA-3510-01 16 86612660 86612660 C T FOXL1 Missense_Mutation p.P111S 0.26 deleterious(0.02) probably_damaging(0.976) TCGA-AA-3510-01 16 89627890 89627890 G T RPL13 Intron 0.28 TCGA-AA-3510-01 16 8989571 8989571 G T USP7 Silent p.I949I 0.09 TCGA-AA-3510-01 16 8996318 8996318 G A USP7 Nonsense_Mutation p.R621* 0.17 TCGA-AA-3510-01 16 9000435 9000435 C A USP7 Nonsense_Mutation p.E426* 0.12 TCGA-AA-3510-01 16 90162510 90162510 G T TUBB8P7 RNA 0.28 TCGA-AA-3510-01 16 9210612 9210612 G A C16orf72 Missense_Mutation p.R224Q 0.36 deleterious(0.02) possibly_damaging(0.845) TCGA-AA-3510-01 17 10212682 10212682 G A MYH13 Missense_Mutation p.R1680C 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 17 10219271 10219271 C A MYH13 Missense_Mutation p.Q1270H 0.09 tolerated(0.6) benign(0.001) TCGA-AA-3510-01 17 10263384 10263384 C A MYH13 Nonsense_Mutation p.E180* 0.40 TCGA-AA-3510-01 17 10302191 10302191 C T MYH8 Missense_Mutation p.R1292Q 0.31 deleterious(0.01) probably_damaging(0.936) TCGA-AA-3510-01 17 10351950 10351950 T C MYH4 Missense_Mutation p.N1506D 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 17 10356159 10356159 C A MYH4 Nonsense_Mutation p.E1068* 0.34 TCGA-AA-3510-01 17 10428264 10428264 C A MYH2 Missense_Mutation p.R1594I 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3510-01 17 10447329 10447329 C A MYH2 Nonsense_Mutation p.E180* 0.12 TCGA-AA-3510-01 17 10447416 10447416 C T MYH2 Splice_Site p.X178_splice 0.31 TCGA-AA-3510-01 17 11568194 11568194 G A DNAH9 Nonsense_Mutation p.W880* 0.30 TCGA-AA-3510-01 17 11757342 11757342 C T DNAH9 Missense_Mutation p.S3177L 0.28 possibly_damaging(0.903) TCGA-AA-3510-01 17 12043161 12043161 C T MAP2K4 Missense_Mutation p.T349M 0.23 tolerated(0.12) probably_damaging(0.992) TCGA-AA-3510-01 17 12666670 12666670 C T MYOCD Silent p.F890F 0.30 TCGA-AA-3510-01 17 1368853 1368853 C T MYO1C 3'UTR 0.30 TCGA-AA-3510-01 17 14248462 14248462 C T HS3ST3B1 Silent p.I224I 0.44 TCGA-AA-3510-01 17 15234496 15234496 C A TEKT3 Missense_Mutation p.R136I 0.33 deleterious(0.03) benign(0.236) TCGA-AA-3510-01 17 1531046 1531046 C T SLC43A2 Silent p.K41K 0.34 TCGA-AA-3510-01 17 1582908 1582908 C A PRPF8 Missense_Mutation p.K428N 0.34 tolerated(0.16) benign(0.012) TCGA-AA-3510-01 17 15897070 15897070 C T ZSWIM7 Splice_Site p.X33_splice 0.21 TCGA-AA-3510-01 17 15984021 15984021 C A NCOR1 Missense_Mutation p.L1066F 0.29 probably_damaging(0.997) TCGA-AA-3510-01 17 1629654 1629654 C T WDR81 Silent p.V467V 0.37 TCGA-AA-3510-01 17 16343404 16343404 A C TRPV2 3'Flank 0.33 TCGA-AA-3510-01 17 16455148 16455148 G A ZNF287 3'UTR 0.37 TCGA-AA-3510-01 17 16527580 16527580 G A ZNF624 Missense_Mutation p.S207F 0.36 deleterious(0) benign(0.003) TCGA-AA-3510-01 17 16623948 16623948 G A CCDC144A Missense_Mutation p.E623K 0.24 deleterious(0.04) possibly_damaging(0.636) TCGA-AA-3510-01 17 16677020 16677020 T G CCDC144A 3'UTR 0.25 TCGA-AA-3510-01 17 16677089 16677089 C A CCDC144A 3'UTR 0.31 TCGA-AA-3510-01 17 16703651 16703651 G A CCDC144A 3'UTR 0.18 TCGA-AA-3510-01 17 16705644 16705644 C T CCDC144A 3'UTR 0.22 TCGA-AA-3510-01 17 16705817 16705817 G A CCDC144A 3'UTR 0.27 TCGA-AA-3510-01 17 18030174 18030174 C A MYO15A Silent p.I1312I 0.32 TCGA-AA-3510-01 17 18065941 18065941 G A MYO15A Missense_Mutation p.R3187H 0.38 unknown(0) TCGA-AA-3510-01 17 18210244 18210244 T G TOP3A Missense_Mutation p.E117D 0.28 tolerated(0.09) benign(0.375) TCGA-AA-3510-01 17 18565695 18565695 C A ZNF286B Missense_Mutation p.R375I 0.38 deleterious(0) probably_damaging(0.976) TCGA-AA-3510-01 17 18566287 18566287 A G ZNF286B Missense_Mutation p.F178L 0.31 tolerated(0.31) benign(0.004) TCGA-AA-3510-01 17 18602539 18602539 C T TRIM16L 5'UTR 0.28 TCGA-AA-3510-01 17 19552234 19552234 C T ALDH3A2 5'UTR 0.33 TCGA-AA-3510-01 17 19575102 19575102 T G ALDH3A2 Missense_Mutation p.L426V 0.10 deleterious(0.03) probably_damaging(0.963) TCGA-AA-3510-01 17 19582127 19582127 C T SLC47A2 Missense_Mutation p.A561T 0.21 tolerated(0.38) benign(0.002) TCGA-AA-3510-01 17 20108227 20108227 A G SPECC1 Missense_Mutation p.T289A 0.22 tolerated(0.88) benign(0.002) TCGA-AA-3510-01 17 20806083 20806083 C T RP11-344E13.3 RNA 0.44 TCGA-AA-3510-01 17 21825572 21825572 C T FAM27L Intron 0.36 TCGA-AA-3510-01 17 2239426 2239426 C T TSR1 Missense_Mutation p.A36T 0.44 tolerated(0.17) benign(0.044) TCGA-AA-3510-01 17 2601358 2601358 C T CLUH Missense_Mutation p.R560H 0.20 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 17 26110016 26110016 C T NOS2 Missense_Mutation p.R195H 0.38 deleterious(0) possibly_damaging(0.704) TCGA-AA-3510-01 17 26694478 26694478 C T VTN Missense_Mutation p.R450H 0.36 deleterious(0.02) probably_damaging(0.994) TCGA-AA-3510-01 17 26695977 26695977 C T VTN Missense_Mutation p.D248N 0.30 tolerated(0.12) benign(0.013) TCGA-AA-3510-01 17 27030675 27030675 C A PROCA1 Missense_Mutation p.E304D 0.26 tolerated(0.12) benign(0.133) TCGA-AA-3510-01 17 27030870 27030870 C A PROCA1 Missense_Mutation p.K239N 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 17 27614556 27614556 C A NUFIP2 Missense_Mutation p.K152N 0.41 deleterious(0.02) possibly_damaging(0.494) TCGA-AA-3510-01 17 27778482 27778482 C A TAOK1 5'UTR 0.53 TCGA-AA-3510-01 17 27834990 27834990 G A TAOK1 Missense_Mutation p.R472Q 0.33 tolerated(0.22) benign(0.275) TCGA-AA-3510-01 17 28378143 28378143 T G EFCAB5 Missense_Mutation p.F403C 0.35 deleterious(0.01) probably_damaging(0.927) TCGA-AA-3510-01 17 28419039 28419039 C A EFCAB5 Missense_Mutation p.S1363Y 0.32 tolerated(0.96) benign(0.005) TCGA-AA-3510-01 17 28890413 28890413 G A TBC1D29 Silent p.R141R 0.35 TCGA-AA-3510-01 17 29111300 29111300 C T CRLF3 Missense_Mutation p.E412K 0.27 deleterious(0.04) possibly_damaging(0.673) TCGA-AA-3510-01 17 2966626 2966626 G A OR1D5 Silent p.I92I 0.28 TCGA-AA-3510-01 17 30536279 30536279 G A RHOT1 Intron 0.23 TCGA-AA-3510-01 17 31098207 31098207 C T MYO1D Missense_Mutation p.R217H 0.27 tolerated(0.23) benign(0.005) TCGA-AA-3510-01 17 33289967 33289967 C T ZNF830 3'UTR 0.36 TCGA-AA-3510-01 17 3336987 3336987 C T OR1E2 Missense_Mutation p.R50Q 0.33 tolerated(0.22) benign(0.002) TCGA-AA-3510-01 17 3343407 3343407 C A SPATA22 3'UTR 0.07 TCGA-AA-3510-01 17 33680024 33680024 C T SLFN11 Missense_Mutation p.S686N 0.26 tolerated(0.59) benign(0.004) TCGA-AA-3510-01 17 33690096 33690096 C T SLFN11 Missense_Mutation p.G244D 0.36 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 17 33690238 33690238 C A SLFN11 Missense_Mutation p.D197Y 0.27 deleterious(0.02) possibly_damaging(0.491) TCGA-AA-3510-01 17 33690643 33690643 G A SLFN11 Nonsense_Mutation p.R62* 0.29 TCGA-AA-3510-01 17 33768312 33768312 C T SLFN13 Missense_Mutation p.V666I 0.30 tolerated(1) benign(0.007) TCGA-AA-3510-01 17 33768627 33768627 C A SLFN13 Missense_Mutation p.R626I 0.28 deleterious(0.02) possibly_damaging(0.748) TCGA-AA-3510-01 17 33806545 33806545 C T SLFN12L Silent p.S228S 0.25 TCGA-AA-3510-01 17 33875598 33875598 C A SLFN14 Missense_Mutation p.R800I 0.07 deleterious(0.01) benign(0.169) TCGA-AA-3510-01 17 33875866 33875866 C T SLFN14 Missense_Mutation p.A711T 0.32 tolerated(0.51) benign(0.007) TCGA-AA-3510-01 17 33904198 33904198 C T PEX12 Missense_Mutation p.R180Q 0.33 tolerated(0.56) benign(0.004) TCGA-AA-3510-01 17 34072135 34072135 C T GAS2L2 Missense_Mutation p.R794Q 0.35 deleterious(0.01) probably_damaging(0.928) TCGA-AA-3510-01 17 34174125 34174125 C T TAF15 3'UTR 0.39 TCGA-AA-3510-01 17 34415991 34415991 C T CCL3 3'UTR 0.25 TCGA-AA-3510-01 17 34870295 34870295 G A MYO19 Silent p.F238F 0.26 TCGA-AA-3510-01 17 35486327 35486327 C T ACACA Missense_Mutation p.D1970N 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3510-01 17 36375155 36375155 G A RP11-1407O15.2 Silent p.N121N 0.16 TCGA-AA-3510-01 17 36485803 36485803 C A GPR179 Nonsense_Mutation p.E1217* 0.29 TCGA-AA-3510-01 17 36490639 36490639 C T GPR179 Missense_Mutation p.G578S 0.33 tolerated(0.19) benign(0.252) TCGA-AA-3510-01 17 36499536 36499536 G A GPR179 Missense_Mutation p.S46F 0.35 tolerated(0.3) benign(0.023) TCGA-AA-3510-01 17 3662793 3662793 G A ITGAE Missense_Mutation p.R257W 0.45 deleterious(0.01) probably_damaging(0.94) TCGA-AA-3510-01 17 36716314 36716314 T C SRCIN1 Missense_Mutation p.N605D 0.42 tolerated(0.41) benign(0.112) TCGA-AA-3510-01 17 38029298 38029298 T G ZPBP2 Silent p.V209V 0.35 TCGA-AA-3510-01 17 3819566 3819566 C T P2RX1 5'UTR 0.40 TCGA-AA-3510-01 17 38253425 38253425 G A NR1D1 Missense_Mutation p.S88L 0.30 tolerated(0.21) benign(0.073) TCGA-AA-3510-01 17 38447771 38447771 C T CDC6 Missense_Mutation p.R171W 0.40 deleterious(0) possibly_damaging(0.762) TCGA-AA-3510-01 17 38569746 38569746 T A TOP2A Missense_Mutation p.E155V 0.30 tolerated(0.12) probably_damaging(0.987) TCGA-AA-3510-01 17 38711921 38711921 G A CCR7 Silent p.F70F 0.12 TCGA-AA-3510-01 17 38859999 38859999 G T KRT24 5'UTR 0.32 TCGA-AA-3510-01 17 39022967 39022967 G A KRT12 Nonsense_Mutation p.R158* 0.33 TCGA-AA-3510-01 17 39122958 39122958 G T KRT39 Missense_Mutation p.L51I 0.30 tolerated(0.41) benign(0.022) TCGA-AA-3510-01 17 3917765 3917765 G A ZZEF1 Silent p.F2730F 0.23 TCGA-AA-3510-01 17 39253973 39253973 G A KRTAP4-8 Missense_Mutation p.P122S 0.33 tolerated(0.1) unknown(0) TCGA-AA-3510-01 17 39520041 39520041 G A KRT33B 3'UTR 0.52 TCGA-AA-3510-01 17 39538342 39538342 T C KRT34 Missense_Mutation p.N95D 0.32 deleterious(0.02) benign(0.071) TCGA-AA-3510-01 17 39552818 39552818 C T KRT31 Missense_Mutation p.E148K 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 17 39553537 39553537 C A KRT31 Missense_Mutation p.E85D 0.30 deleterious(0.01) benign(0.232) TCGA-AA-3510-01 17 40253684 40253684 C T DHX58 3'UTR 0.19 TCGA-AA-3510-01 17 40498592 40498592 G T STAT3 Missense_Mutation p.L90I 0.31 tolerated(0.19) benign(0.436) TCGA-AA-3510-01 17 41243774 41243774 C A BRCA1 Missense_Mutation p.E1258D 0.34 tolerated(0.23) benign(0.129) TCGA-AA-3510-01 17 41571097 41571097 G A DHX8 Missense_Mutation p.R352Q 0.29 tolerated(0.6) benign(0.011) TCGA-AA-3510-01 17 41958498 41958498 C A MPP2 Missense_Mutation p.K316N 0.25 deleterious(0) probably_damaging(0.959) TCGA-AA-3510-01 17 42338082 42338082 C A SLC4A1 Missense_Mutation p.E90D 0.39 deleterious(0.02) benign(0.002) TCGA-AA-3510-01 17 42461928 42461928 G A ITGA2B Silent p.F275F 0.24 TCGA-AA-3510-01 17 42807311 42807311 C T DBF4B Silent p.I88I 0.25 TCGA-AA-3510-01 17 42818751 42818751 C A DBF4B Missense_Mutation p.S254Y 0.12 tolerated(0.16) benign(0.282) TCGA-AA-3510-01 17 42929857 42929857 C T EFTUD2 Missense_Mutation p.D879N 0.34 deleterious(0) probably_damaging(0.988) TCGA-AA-3510-01 17 43216450 43216450 C T ACBD4 Silent p.F250F 0.15 TCGA-AA-3510-01 17 43545695 43545695 C A PLEKHM1 Missense_Mutation p.Q396H 0.30 tolerated(0.11) benign(0.01) TCGA-AA-3510-01 17 43924308 43924308 C T SPPL2C Missense_Mutation p.S679L 0.23 tolerated_low_confidence(0.15) benign(0.002) TCGA-AA-3510-01 17 45249393 45249393 A G CDC27 Silent p.C47C 0.23 TCGA-AA-3510-01 17 46622221 46622221 A G HOXB2 Missense_Mutation p.L18P 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 17 4689459 4689459 C T VMO1 Silent p.S63S 0.11 TCGA-AA-3510-01 17 4692377 4692377 C T GLTPD2 Missense_Mutation p.A24V 0.36 tolerated_low_confidence(0.66) benign(0.089) TCGA-AA-3510-01 17 47119664 47119664 G T IGF2BP1 Missense_Mutation p.E334D 0.10 tolerated(0.22) benign(0.107) TCGA-AA-3510-01 17 47700132 47700132 G A SPOP Missense_Mutation p.S14L 0.23 deleterious(0.03) benign(0.002) TCGA-AA-3510-01 17 47888927 47888927 G T KAT7 Missense_Mutation p.E281D 0.30 tolerated(0.28) benign(0.003) TCGA-AA-3510-01 17 4798393 4798393 C T MINK1 Missense_Mutation p.R981W 0.30 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 17 48166531 48166531 C T ITGA3 Missense_Mutation p.R1035W 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-AA-3510-01 17 48246730 48246730 C A SGCA Intron 0.50 TCGA-AA-3510-01 17 48248026 48248026 G A SGCA Missense_Mutation p.D328N 0.34 deleterious(0) benign(0.072) TCGA-AA-3510-01 17 48264226 48264226 C T COL1A1 Missense_Mutation p.D1197N 0.40 unknown(0) TCGA-AA-3510-01 17 48437652 48437652 G T XYLT2 Nonstop_Mutation p.*866Yext*57 0.38 TCGA-AA-3510-01 17 48632882 48632882 G A SPATA20 Silent p.S756S 0.38 TCGA-AA-3510-01 17 48703865 48703865 G A CACNA1G Missense_Mutation p.G2296E 0.40 tolerated_low_confidence(0.3) benign(0.271) TCGA-AA-3510-01 17 4910588 4910588 G A KIF1C Missense_Mutation p.E456K 0.24 deleterious(0.04) possibly_damaging(0.651) TCGA-AA-3510-01 17 4937052 4937052 C A SLC52A1 Missense_Mutation p.E244D 0.13 tolerated(0.48) benign(0.003) TCGA-AA-3510-01 17 4995549 4995549 G T ZFP3 Missense_Mutation p.E250D 0.35 deleterious(0.03) benign(0.314) TCGA-AA-3510-01 17 4995617 4995617 G T ZFP3 Missense_Mutation p.R273I 0.10 tolerated(0.1) possibly_damaging(0.456) TCGA-AA-3510-01 17 51900949 51900949 C T KIF2B Silent p.Y185Y 0.31 TCGA-AA-3510-01 17 51901192 51901192 C T KIF2B Silent p.F266F 0.25 TCGA-AA-3510-01 17 5421177 5421177 C A NLRP1 Nonsense_Mutation p.E1316* 0.50 TCGA-AA-3510-01 17 54939214 54939214 C T DGKE Silent p.I449I 0.33 TCGA-AA-3510-01 17 56619108 56619108 G T C17orf47 3'UTR 0.35 TCGA-AA-3510-01 17 56810108 56810108 G A RAD51C Intron 0.35 TCGA-AA-3510-01 17 57134351 57134351 C A TRIM37 Nonsense_Mutation p.E362* 0.09 TCGA-AA-3510-01 17 57752163 57752163 C A CLTC Missense_Mutation p.F840L 0.15 tolerated(0.57) probably_damaging(0.998) TCGA-AA-3510-01 17 57968225 57968225 T C TUBD1 Missense_Mutation p.K47E 0.25 tolerated(0.6) benign(0.102) TCGA-AA-3510-01 17 58767074 58767074 G A BCAS3 Missense_Mutation p.E56K 0.31 tolerated(0.33) possibly_damaging(0.633) TCGA-AA-3510-01 17 58824607 58824607 C T BCAS3 Nonsense_Mutation p.R124* 0.40 TCGA-AA-3510-01 17 59945033 59945033 G T INTS2 Nonsense_Mutation p.S1167* 0.36 TCGA-AA-3510-01 17 59988926 59988926 C T INTS2 Silent p.A311A 0.39 TCGA-AA-3510-01 17 60451199 60451199 C A EFCAB3 Nonsense_Mutation p.S20* 0.29 TCGA-AA-3510-01 17 60814024 60814024 G A MARCH10 Missense_Mutation p.S402L 0.32 tolerated(0.08) benign(0.027) TCGA-AA-3510-01 17 60865930 60865930 C A MARCH10 Missense_Mutation p.D41Y 0.29 deleterious(0) possibly_damaging(0.8) TCGA-AA-3510-01 17 61988167 61988167 G A CSHL1 Missense_Mutation p.A43V 0.40 tolerated(0.12) probably_damaging(0.994) TCGA-AA-3510-01 17 61994808 61994808 A C GH1 Missense_Mutation p.F172C 0.09 deleterious(0) possibly_damaging(0.877) TCGA-AA-3510-01 17 62018878 62018878 G A SCN4A Silent p.I1588I 0.09 TCGA-AA-3510-01 17 63221468 63221468 C A RGS9 Missense_Mutation p.L586M 0.29 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-AA-3510-01 17 66039284 66039284 G A KPNA2 Silent p.P245P 0.23 TCGA-AA-3510-01 17 66039970 66039970 C T KPNA2 Missense_Mutation p.A316V 0.23 deleterious(0.03) benign(0.045) TCGA-AA-3510-01 17 66303840 66303840 C T ARSG Missense_Mutation p.S69L 0.37 tolerated(0.12) benign(0.005) TCGA-AA-3510-01 17 66989189 66989189 C T ABCA9 Missense_Mutation p.E1198K 0.44 tolerated(0.55) benign(0.035) TCGA-AA-3510-01 17 67016609 67016609 C T ABCA9 Silent p.A840A 0.39 TCGA-AA-3510-01 17 67023159 67023159 G T ABCA9 Missense_Mutation p.L670I 0.30 deleterious(0.01) possibly_damaging(0.458) TCGA-AA-3510-01 17 67023787 67023787 C A ABCA9 Missense_Mutation p.E595D 0.22 tolerated(0.29) benign(0.075) TCGA-AA-3510-01 17 67101750 67101750 C T ABCA6 Missense_Mutation p.A865T 0.35 tolerated(0.39) possibly_damaging(0.529) TCGA-AA-3510-01 17 67136791 67136791 C T ABCA6 Silent p.K18K 0.38 TCGA-AA-3510-01 17 67183887 67183887 T G ABCA10 Missense_Mutation p.Q755H 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 17 67190083 67190083 C T ABCA10 Missense_Mutation p.E465K 0.39 deleterious(0.04) possibly_damaging(0.768) TCGA-AA-3510-01 17 67250469 67250469 C A ABCA5 Nonsense_Mutation p.E1411* 0.21 TCGA-AA-3510-01 17 68128475 68128475 C A KCNJ16 Missense_Mutation p.L83I 0.22 tolerated(0.09) probably_damaging(0.998) TCGA-AA-3510-01 17 6930996 6930996 G A BCL6B 3'UTR 0.44 TCGA-AA-3510-01 17 6978767 6978767 G T CLEC10A Missense_Mutation p.L232I 0.16 tolerated(1) benign(0.058) TCGA-AA-3510-01 17 7107052 7107052 C A DLG4 Missense_Mutation p.K141N 0.44 tolerated(0.08) probably_damaging(0.988) TCGA-AA-3510-01 17 71223381 71223381 C T FAM104A Missense_Mutation p.E82K 0.17 tolerated(0.16) benign(0.265) TCGA-AA-3510-01 17 7129813 7129813 C T DVL2 Silent p.P563P 0.41 TCGA-AA-3510-01 17 7194427 7194427 G A YBX2 Silent p.V148V 0.31 TCGA-AA-3510-01 17 72324590 72324590 C T KIF19 Silent p.S22S 0.53 TCGA-AA-3510-01 17 72469814 72469814 G T CD300A Missense_Mutation p.K60N 0.38 tolerated(0.1) benign(0.436) TCGA-AA-3510-01 17 72473600 72473600 G A CD300A Missense_Mutation p.A187T 0.32 deleterious(0.01) possibly_damaging(0.662) TCGA-AA-3510-01 17 72588588 72588588 G A C17orf77 Missense_Mutation p.E135K 0.34 tolerated_low_confidence(0.49) possibly_damaging(0.486) TCGA-AA-3510-01 17 73942762 73942762 G T ACOX1 3'UTR 0.36 TCGA-AA-3510-01 17 73996310 73996310 A G TEN1 Silent p.R113R 0.32 TCGA-AA-3510-01 17 74075316 74075316 G A ZACN 5'UTR 0.33 TCGA-AA-3510-01 17 74276118 74276118 G A QRICH2 Missense_Mutation p.R1416W 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 17 74900455 74900455 G T MGAT5B Missense_Mutation p.R225M 0.33 deleterious(0) probably_damaging(0.987) TCGA-AA-3510-01 17 74921106 74921106 G A MGAT5B Missense_Mutation p.D373N 0.37 tolerated(0.09) probably_damaging(0.927) TCGA-AA-3510-01 17 76464872 76464872 G T DNAH17 Missense_Mutation p.L2855M 0.14 probably_damaging(0.994) TCGA-AA-3510-01 17 76472660 76472660 G T DNAH17 Missense_Mutation p.F2702L 0.29 benign(0.003) TCGA-AA-3510-01 17 7664070 7664070 A G DNAH2 Missense_Mutation p.D933G 0.16 benign(0.003) TCGA-AA-3510-01 17 7667544 7667544 G A DNAH2 Missense_Mutation p.E1097K 0.32 possibly_damaging(0.522) TCGA-AA-3510-01 17 7668801 7668801 G T DNAH2 Missense_Mutation p.E1143D 0.37 benign(0.02) TCGA-AA-3510-01 17 7700498 7700498 T C DNAH2 Missense_Mutation p.F2623S 0.11 probably_damaging(1) TCGA-AA-3510-01 17 7831142 7831142 T C KCNAB3 Missense_Mutation p.N82S 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-AA-3510-01 17 78348281 78348281 C A RNF213 Silent p.G4322G 0.33 TCGA-AA-3510-01 17 78857694 78857694 C T RPTOR Silent p.F588F 0.23 TCGA-AA-3510-01 17 79108290 79108290 G A AATK Missense_Mutation p.L23F 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3510-01 17 79478576 79478576 C T ACTG1 Missense_Mutation p.R147H 0.44 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-AA-3510-01 17 79632504 79632504 G A OXLD1 Silent p.F57F 0.42 TCGA-AA-3510-01 17 7976124 7976124 C T ALOX12B Missense_Mutation p.D691N 0.10 tolerated(0.19) probably_damaging(1) TCGA-AA-3510-01 17 79803530 79803530 G A P4HB Silent p.I422I 0.35 TCGA-AA-3510-01 17 79827220 79827220 T G ARHGDIA Missense_Mutation p.K113Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 17 80656481 80656481 C T RAB40B 5'UTR 0.31 TCGA-AA-3510-01 17 8249086 8249086 A C ODF4 Missense_Mutation p.E230D 0.12 tolerated(0.59) benign(0.01) TCGA-AA-3510-01 17 902102 902102 A G TIMM22 Missense_Mutation p.T108A 0.19 tolerated(0.22) benign(0.192) TCGA-AA-3510-01 17 9613285 9613285 A C USP43 Missense_Mutation p.N675T 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 18 10671435 10671435 G A PIEZO2 3'Flank 0.29 TCGA-AA-3510-01 18 12427052 12427052 A C SLMO1 Missense_Mutation p.N102H 0.30 tolerated(0.09) benign(0.394) TCGA-AA-3510-01 18 12678119 12678119 C T CEP76 Missense_Mutation p.E538K 0.26 deleterious(0.02) benign(0.019) TCGA-AA-3510-01 18 12720593 12720593 A C PSMG2 Missense_Mutation p.E164D 0.33 tolerated(0.06) possibly_damaging(0.77) TCGA-AA-3510-01 18 12999436 12999436 C T CEP192 Nonsense_Mutation p.R5* 0.41 TCGA-AA-3510-01 18 13056274 13056274 C T CEP192 Missense_Mutation p.P1229S 0.30 tolerated(0.54) benign(0.109) TCGA-AA-3510-01 18 13068385 13068385 C A CEP192 Missense_Mutation p.L1596I 0.09 tolerated(0.19) benign(0.168) TCGA-AA-3510-01 18 13741530 13741530 C T RNMT Missense_Mutation p.R272C 0.38 tolerated(0.11) benign(0.009) TCGA-AA-3510-01 18 14511988 14511988 G T POTEC Missense_Mutation p.S513Y 0.18 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-AA-3510-01 18 14791465 14791465 C T ANKRD30B Silent p.F600F 0.31 TCGA-AA-3510-01 18 14837282 14837282 C A ANKRD30B Missense_Mutation p.Q855K 0.35 tolerated_low_confidence(0.49) benign(0.092) TCGA-AA-3510-01 18 163331 163331 A C USP14 Missense_Mutation p.K14Q 0.11 tolerated(0.13) possibly_damaging(0.753) TCGA-AA-3510-01 18 19020331 19020331 C T GREB1L Missense_Mutation p.R351C 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 18 19153793 19153793 C A ESCO1 Nonsense_Mutation p.E338* 0.32 TCGA-AA-3510-01 18 20569273 20569273 G A RBBP8 Missense_Mutation p.E267K 0.34 deleterious(0.04) possibly_damaging(0.493) TCGA-AA-3510-01 18 20815911 20815911 G T CABLES1 Missense_Mutation p.R413I 0.08 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 18 21478926 21478926 A C LAMA3 Silent p.V1911V 0.26 TCGA-AA-3510-01 18 22040682 22040682 C A HRH4 5'UTR 0.34 TCGA-AA-3510-01 18 23758882 23758882 C A PSMA8 Missense_Mutation p.A195D 0.32 deleterious(0) possibly_damaging(0.762) TCGA-AA-3510-01 18 24127756 24127756 C T KCTD1 Intron 0.25 TCGA-AA-3510-01 18 25589703 25589703 C T CDH2 Missense_Mutation p.R227H 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 18 2763774 2763774 C T SMCHD1 Missense_Mutation p.S1569L 0.31 tolerated(0.17) benign(0.121) TCGA-AA-3510-01 18 28906843 28906843 G T DSG1 Missense_Mutation p.D31Y 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3510-01 18 2891479 2891479 G T EMILIN2 Nonsense_Mutation p.E452* 0.20 TCGA-AA-3510-01 18 29102104 29102104 G A DSG2 Silent p.S194S 0.29 TCGA-AA-3510-01 18 29115242 29115242 A C DSG2 Missense_Mutation p.K430N 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-AA-3510-01 18 29126055 29126055 A C DSG2 Silent p.V902V 0.19 TCGA-AA-3510-01 18 3100421 3100421 C T MYOM1 Silent p.T1193T 0.09 TCGA-AA-3510-01 18 31323582 31323582 C A ASXL3 Missense_Mutation p.S1257Y 0.37 possibly_damaging(0.646) TCGA-AA-3510-01 18 31538214 31538214 T C NOL4 Missense_Mutation p.K409E 0.52 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 18 32707197 32707197 C T MAPRE2 Intron 0.27 TCGA-AA-3510-01 18 32825683 32825683 G T ZNF397 Missense_Mutation p.E338D 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-AA-3510-01 18 32888911 32888911 G T ZNF271 RNA 0.31 TCGA-AA-3510-01 18 33689570 33689570 G A SLC39A6 Missense_Mutation p.R752C 0.34 deleterious(0.01) possibly_damaging(0.719) TCGA-AA-3510-01 18 3456483 3456483 C A TGIF1 Missense_Mutation p.L179I 0.34 deleterious(0) probably_damaging(0.989) TCGA-AA-3510-01 18 3456494 3456494 G T TGIF1 Missense_Mutation p.W182C 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 18 3508649 3508649 T G DLGAP1 Missense_Mutation p.K830N 0.29 deleterious(0) possibly_damaging(0.876) TCGA-AA-3510-01 18 40853910 40853910 C A SYT4 Nonsense_Mutation p.E162* 0.41 TCGA-AA-3510-01 18 40854042 40854042 G T SYT4 Missense_Mutation p.L118M 0.36 tolerated(0.07) possibly_damaging(0.461) TCGA-AA-3510-01 18 42532539 42532539 G A SETBP1 Silent p.T1078T 0.13 TCGA-AA-3510-01 18 43565263 43565263 T C PSTPIP2 3'UTR 0.38 TCGA-AA-3510-01 18 44065079 44065079 C T LOXHD1 Missense_Mutation p.E918K 0.33 tolerated(0.19) possibly_damaging(0.64) TCGA-AA-3510-01 18 44125290 44125290 C A LOXHD1 Missense_Mutation p.Q92H 0.31 deleterious(0.05) probably_damaging(0.979) TCGA-AA-3510-01 18 45372032 45372032 A G SMAD2 Splice_Site p.X379_splice 0.32 TCGA-AA-3510-01 18 45395710 45395710 C A SMAD2 Nonsense_Mutation p.E142* 0.36 TCGA-AA-3510-01 18 47753792 47753792 G T CCDC11 Missense_Mutation p.H502N 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 18 47800077 47800077 T C MBD1 Missense_Mutation p.T435A 0.35 tolerated(1) benign(0.001) TCGA-AA-3510-01 18 48473462 48473462 G T ME2 Nonsense_Mutation p.E555* 0.32 TCGA-AA-3510-01 18 48510622 48510622 G A ELAC1 Missense_Mutation p.R105Q 0.28 tolerated(0.34) benign(0.006) TCGA-AA-3510-01 18 50942640 50942640 G T DCC Intron 0.11 TCGA-AA-3510-01 18 51888112 51888112 T G C18orf54 Missense_Mutation p.L128R 0.27 deleterious(0) probably_damaging(0.991) TCGA-AA-3510-01 18 51904672 51904672 T G C18orf54 3'UTR 0.33 TCGA-AA-3510-01 18 52265368 52265368 C A DYNAP Missense_Mutation p.H209N 0.48 tolerated_low_confidence(0.19) unknown(0) TCGA-AA-3510-01 18 53017619 53017619 G A TCF4 Nonsense_Mutation p.R276* 0.21 TCGA-AA-3510-01 18 55024205 55024205 C T ST8SIA3 Missense_Mutation p.R122W 0.29 probably_damaging(0.94) TCGA-AA-3510-01 18 56274625 56274625 G A ALPK2 Silent p.I52I 0.43 TCGA-AA-3510-01 18 56585986 56585986 G A ZNF532 Missense_Mutation p.R156Q 0.26 tolerated(0.8) benign(0.003) TCGA-AA-3510-01 18 56606846 56606846 G T ZNF532 Nonsense_Mutation p.E900* 0.17 TCGA-AA-3510-01 18 56648796 56648796 G T ZNF532 Nonsense_Mutation p.E1120* 0.24 TCGA-AA-3510-01 18 57013169 57013169 C T LMAN1 Missense_Mutation p.D313N 0.12 tolerated(0.07) benign(0.028) TCGA-AA-3510-01 18 581057 581057 C A CETN1 3'UTR 0.30 TCGA-AA-3510-01 18 61070957 61070957 A C VPS4B Missense_Mutation p.F156C 0.15 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 18 61225624 61225624 G T SERPINB12 Nonsense_Mutation p.E70* 0.13 TCGA-AA-3510-01 18 61570342 61570342 C A SERPINB2 Missense_Mutation p.L351I 0.10 tolerated(0.21) probably_damaging(0.999) TCGA-AA-3510-01 18 61621721 61621721 G T HMSD Missense_Mutation p.R51I 0.22 deleterious(0) probably_damaging(0.958) TCGA-AA-3510-01 18 627130 627130 C A CLUL1 Missense_Mutation p.L153I 0.41 tolerated(0.45) possibly_damaging(0.905) TCGA-AA-3510-01 18 649701 649701 G A C18orf56 3'UTR 0.26 TCGA-AA-3510-01 18 66504397 66504397 G T CCDC102B Nonsense_Mutation p.E133* 0.32 TCGA-AA-3510-01 18 67836222 67836222 T G RTTN Missense_Mutation p.N520H 0.11 tolerated(0.06) possibly_damaging(0.739) TCGA-AA-3510-01 18 6948487 6948487 G A LAMA1 Silent p.S2875S 0.39 TCGA-AA-3510-01 18 6977821 6977821 G A LAMA1 Missense_Mutation p.R2084W 0.33 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 18 7007189 7007189 G A LAMA1 Silent p.C1403C 0.19 TCGA-AA-3510-01 18 7050895 7050895 G A LAMA1 Missense_Mutation p.A129V 0.25 deleterious(0) possibly_damaging(0.744) TCGA-AA-3510-01 18 72345283 72345283 A C ZNF407 Missense_Mutation p.S770R 0.27 tolerated(0.64) benign(0.016) TCGA-AA-3510-01 18 74962606 74962606 C T GALR1 Silent p.F34F 0.18 TCGA-AA-3510-01 18 77170843 77170843 G A NFATC1 Missense_Mutation p.E177K 0.52 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 18 77211682 77211682 G A NFATC1 Missense_Mutation p.R577H 0.44 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 18 77875433 77875433 A C ADNP2 Missense_Mutation p.Q3P 0.31 deleterious(0) probably_damaging(0.988) TCGA-AA-3510-01 18 908267 908267 G T ADCYAP1 Missense_Mutation p.D82Y 0.29 deleterious(0.02) benign(0.312) TCGA-AA-3510-01 18 9126856 9126856 G T NDUFV2 Nonsense_Mutation p.E203* 0.29 TCGA-AA-3510-01 18 9522379 9522379 G T RALBP1 Nonsense_Mutation p.E309* 0.21 TCGA-AA-3510-01 18 9535782 9535782 G A RALBP1 Silent p.A605A 0.27 TCGA-AA-3510-01 18 9553401 9553401 C A PPP4R1 Missense_Mutation p.R737I 0.54 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 18 9931855 9931855 C T VAPA Missense_Mutation p.S43L 0.29 deleterious(0.04) possibly_damaging(0.823) TCGA-AA-3510-01 19 10970624 10970624 C T C19orf38 Silent p.F165F 0.29 TCGA-AA-3510-01 19 11534588 11534588 G T CCDC151 Silent p.I358I 0.30 TCGA-AA-3510-01 19 11796129 11796129 A C ZNF833P RNA 0.29 TCGA-AA-3510-01 19 11796996 11796996 G T ZNF833P RNA 0.36 TCGA-AA-3510-01 19 11891609 11891609 C T ZNF441 Nonsense_Mutation p.R324* 0.22 TCGA-AA-3510-01 19 11891955 11891955 G T ZNF441 Missense_Mutation p.R439I 0.48 deleterious(0.01) benign(0.055) TCGA-AA-3510-01 19 11916814 11916814 G T ZNF491 Nonsense_Mutation p.E16* 0.31 TCGA-AA-3510-01 19 11918882 11918882 G T ZNF491 3'UTR 0.35 TCGA-AA-3510-01 19 11942522 11942522 T C ZNF440 Silent p.C177C 0.38 TCGA-AA-3510-01 19 11979468 11979468 A C ZNF439 3'UTR 0.19 TCGA-AA-3510-01 19 12089650 12089650 G T ZNF763 Missense_Mutation p.R307I 0.29 tolerated(0.1) benign(0) TCGA-AA-3510-01 19 12126296 12126296 G T ZNF433 Missense_Mutation p.F462L 0.36 tolerated(0.68) benign(0.01) TCGA-AA-3510-01 19 12186500 12186500 A T ZNF844 Missense_Mutation p.I189L 0.16 tolerated(0.54) benign(0.394) TCGA-AA-3510-01 19 12256515 12256515 C A ZNF625 Missense_Mutation p.R239I 0.32 tolerated(0.06) benign(0.001) TCGA-AA-3510-01 19 12298415 12298415 C T ZNF136 Nonsense_Mutation p.R408* 0.11 TCGA-AA-3510-01 19 12576173 12576173 C A ZNF709 Missense_Mutation p.R188I 0.09 tolerated(0.15) probably_damaging(0.998) TCGA-AA-3510-01 19 12576269 12576269 C T ZNF709 Missense_Mutation p.R156Q 0.34 tolerated(1) possibly_damaging(0.88) TCGA-AA-3510-01 19 12776599 12776599 C T MAN2B1 Silent p.P60P 0.46 TCGA-AA-3510-01 19 13084240 13084240 G A DAND5 Missense_Mutation p.R121Q 0.07 tolerated(0.37) benign(0.028) TCGA-AA-3510-01 19 14034219 14034219 C T CC2D1A Missense_Mutation p.A572V 0.44 tolerated(0.09) benign(0.005) TCGA-AA-3510-01 19 14261849 14261849 C T LPHN1 Missense_Mutation p.E1421K 0.19 deleterious(0.01) possibly_damaging(0.582) TCGA-AA-3510-01 19 1468532 1468532 A C APC2 Missense_Mutation p.E1744D 0.27 benign(0.035) TCGA-AA-3510-01 19 14736317 14736317 G A EMR3 Missense_Mutation p.S636L 0.35 deleterious(0.02) benign(0.024) TCGA-AA-3510-01 19 14854299 14854299 A C EMR2 Missense_Mutation p.L799W 0.13 tolerated(0.23) benign(0.005) TCGA-AA-3510-01 19 14910333 14910333 G A OR7C1 Silent p.L206L 0.34 TCGA-AA-3510-01 19 15164693 15164693 C T CASP14 Silent p.F109F 0.31 TCGA-AA-3510-01 19 15224675 15224675 C T SYDE1 Silent p.F703F 0.21 TCGA-AA-3510-01 19 15297716 15297716 C T NOTCH3 Missense_Mutation p.D642N 0.47 tolerated(0.13) probably_damaging(0.997) TCGA-AA-3510-01 19 15383645 15383645 G A BRD4 Missense_Mutation p.A89V 0.35 unknown(0) TCGA-AA-3510-01 19 15562724 15562724 C A RASAL3 Missense_Mutation p.R973I 0.29 tolerated(0.1) benign(0.071) TCGA-AA-3510-01 19 15566920 15566920 G T RASAL3 Silent p.S572S 0.27 TCGA-AA-3510-01 19 15791075 15791075 A C CYP4F12 Missense_Mutation p.N122T 0.31 tolerated(0.56) benign(0) TCGA-AA-3510-01 19 16060614 16060614 G A OR10H4 Missense_Mutation p.G266D 0.32 tolerated(0.08) possibly_damaging(0.772) TCGA-AA-3510-01 19 1611586 1611586 C T TCF3 3'UTR 0.33 TCGA-AA-3510-01 19 16199908 16199908 C A TPM4 Missense_Mutation p.S206Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 19 16589998 16589998 T A CALR3 Nonsense_Mutation p.K367* 0.30 TCGA-AA-3510-01 19 16899893 16899893 G T NWD1 Missense_Mutation p.E944D 0.12 deleterious(0.02) benign(0.211) TCGA-AA-3510-01 19 17091341 17091341 C A CPAMD8 Missense_Mutation p.E564D 0.33 tolerated(0.45) benign(0.003) TCGA-AA-3510-01 19 17328958 17328958 C T USE1 Intron 0.41 TCGA-AA-3510-01 19 17366391 17366391 G A USHBP1 Missense_Mutation p.R499W 0.31 deleterious(0.03) possibly_damaging(0.891) TCGA-AA-3510-01 19 17370746 17370746 G A USHBP1 Missense_Mutation p.S243F 0.26 deleterious(0) probably_damaging(0.926) TCGA-AA-3510-01 19 17657509 17657509 C T FAM129C Silent p.F554F 0.25 TCGA-AA-3510-01 19 17932156 17932156 C T INSL3 Missense_Mutation p.E54K 0.32 deleterious_low_confidence(0.03) probably_damaging(0.982) TCGA-AA-3510-01 19 17937428 17937428 C T JAK3 3'UTR 0.32 TCGA-AA-3510-01 19 17937440 17937440 C A JAK3 3'UTR 0.35 TCGA-AA-3510-01 19 17988625 17988625 G A SLC5A5 Silent p.A264A 0.26 TCGA-AA-3510-01 19 1800385 1800385 C A ATP8B3 Nonsense_Mutation p.E406* 0.43 TCGA-AA-3510-01 19 18710394 18710394 G A CRLF1 Silent p.G126G 0.33 TCGA-AA-3510-01 19 19033516 19033516 G A DDX49 Missense_Mutation p.E247K 0.27 tolerated(0.42) benign(0.003) TCGA-AA-3510-01 19 1918142 1918142 C T SCAMP4 Silent p.L51L 0.42 TCGA-AA-3510-01 19 19356160 19356160 C A NCAN Missense_Mutation p.F1177L 0.13 deleterious(0) probably_damaging(0.985) TCGA-AA-3510-01 19 19360788 19360788 G T NCAN 3'UTR 0.30 TCGA-AA-3510-01 19 19427319 19427319 C T SUGP1 Missense_Mutation p.A40T 0.22 deleterious(0.01) probably_damaging(0.974) TCGA-AA-3510-01 19 19790823 19790823 A C ZNF101 Missense_Mutation p.K342T 0.19 tolerated(0.14) benign(0.179) TCGA-AA-3510-01 19 20229109 20229109 G T ZNF90 Missense_Mutation p.R249I 0.35 tolerated(0.38) benign(0.03) TCGA-AA-3510-01 19 20229361 20229361 G A ZNF90 Missense_Mutation p.R333K 0.34 tolerated(0.3) benign(0.045) TCGA-AA-3510-01 19 21239753 21239753 G A ZNF430 Silent p.S213S 0.22 TCGA-AA-3510-01 19 21240259 21240259 T G ZNF430 Missense_Mutation p.F382C 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 19 21365861 21365861 G A ZNF431 Missense_Mutation p.R252K 0.24 tolerated(0.61) possibly_damaging(0.707) TCGA-AA-3510-01 19 21720373 21720373 G A ZNF429 Silent p.E506E 0.45 TCGA-AA-3510-01 19 21909165 21909165 T C ZNF100 3'UTR 0.33 TCGA-AA-3510-01 19 2206738 2206738 C T DOT1L Silent p.I266I 0.39 TCGA-AA-3510-01 19 22156665 22156665 G T ZNF208 Missense_Mutation p.H391N 0.15 deleterious(0) probably_damaging(0.988) TCGA-AA-3510-01 19 22193599 22193599 C A ZNF208 5'UTR 0.24 TCGA-AA-3510-01 19 22575667 22575667 T G ZNF98 Missense_Mutation p.K124Q 0.24 deleterious(0.01) probably_damaging(0.981) TCGA-AA-3510-01 19 22847541 22847541 G T ZNF492 Missense_Mutation p.R357I 0.22 tolerated(0.41) benign(0.011) TCGA-AA-3510-01 19 22847557 22847557 G A ZNF492 Silent p.E362E 0.13 TCGA-AA-3510-01 19 23543202 23543202 C T ZNF91 Missense_Mutation p.G860D 0.09 deleterious(0.04) probably_damaging(0.991) TCGA-AA-3510-01 19 23926733 23926733 C T ZNF681 Missense_Mutation p.G540D 0.25 tolerated(0.08) probably_damaging(0.987) TCGA-AA-3510-01 19 2736916 2736916 C T SLC39A3 Intron 0.37 TCGA-AA-3510-01 19 2853084 2853084 G A ZNF555 Missense_Mutation p.E341K 0.26 tolerated(0.6) benign(0.355) TCGA-AA-3510-01 19 2877779 2877779 C T ZNF556 Nonsense_Mutation p.R275* 0.10 TCGA-AA-3510-01 19 2917574 2917574 T C ZNF57 Missense_Mutation p.W319R 0.29 tolerated(0.35) benign(0.284) TCGA-AA-3510-01 19 31767585 31767585 C T TSHZ3 Silent p.G1038G 0.29 TCGA-AA-3510-01 19 31767627 31767627 C T TSHZ3 Silent p.P1024P 0.09 TCGA-AA-3510-01 19 31769927 31769927 G A TSHZ3 Missense_Mutation p.R258C 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 19 32844766 32844766 A C ZNF507 Silent p.R344R 0.28 TCGA-AA-3510-01 19 33281648 33281648 G A TDRD12 3'UTR 0.41 TCGA-AA-3510-01 19 33333094 33333094 C A SLC7A9 Nonsense_Mutation p.E402* 0.14 TCGA-AA-3510-01 19 33422275 33422275 C A CEP89 Intron 0.20 TCGA-AA-3510-01 19 33422436 33422436 C A CEP89 Nonsense_Mutation p.E310* 0.36 TCGA-AA-3510-01 19 33597678 33597678 G T GPATCH1 Missense_Mutation p.E386D 0.33 tolerated(0.41) benign(0.009) TCGA-AA-3510-01 19 35525109 35525109 C T SCN1B 3'UTR 0.40 TCGA-AA-3510-01 19 3586872 3586872 G A GIPC3 Missense_Mutation p.E158K 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 19 36205865 36205865 C T ZBTB32 Nonsense_Mutation p.R113* 0.22 TCGA-AA-3510-01 19 36304136 36304136 A C PRODH2 Missense_Mutation p.S16R 0.31 benign(0.307) TCGA-AA-3510-01 19 36341340 36341340 C T NPHS1 Silent p.Q178Q 0.46 TCGA-AA-3510-01 19 36728418 36728418 G T ZNF146 3'UTR 0.34 TCGA-AA-3510-01 19 36967494 36967494 G A ZNF566 5'UTR 0.15 TCGA-AA-3510-01 19 37309484 37309484 G T ZNF790 Missense_Mutation p.L588I 0.37 deleterious(0.02) benign(0.132) TCGA-AA-3510-01 19 37382494 37382494 C A ZNF829 Missense_Mutation p.R481I 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-AA-3510-01 19 37383246 37383246 A C ZNF829 Silent p.T230T 0.09 TCGA-AA-3510-01 19 37643596 37643596 C A ZNF585A Missense_Mutation p.R347I 0.16 deleterious(0) probably_damaging(0.951) TCGA-AA-3510-01 19 3785089 3785089 G A MATK Intron 0.32 TCGA-AA-3510-01 19 37904187 37904187 C A ZNF569 Missense_Mutation p.R458I 0.41 deleterious(0.02) probably_damaging(0.992) TCGA-AA-3510-01 19 38125901 38125901 C T ZFP30 Missense_Mutation p.R514Q 0.23 deleterious(0.03) probably_damaging(0.964) TCGA-AA-3510-01 19 38126789 38126789 T G ZFP30 Missense_Mutation p.K218T 0.33 deleterious(0) benign(0.444) TCGA-AA-3510-01 19 38160053 38160053 C A ZNF781 3'UTR 0.37 TCGA-AA-3510-01 19 38190046 38190046 C A ZNF607 Missense_Mutation p.R329I 0.43 deleterious(0.04) possibly_damaging(0.539) TCGA-AA-3510-01 19 38377527 38377527 C A WDR87 Nonsense_Mutation p.E2223* 0.34 TCGA-AA-3510-01 19 38377563 38377563 C A WDR87 Nonsense_Mutation p.E2211* 0.35 TCGA-AA-3510-01 19 38378721 38378721 C A WDR87 Nonsense_Mutation p.E1825* 0.30 TCGA-AA-3510-01 19 38379483 38379483 C T WDR87 Missense_Mutation p.E1571K 0.33 benign(0.444) TCGA-AA-3510-01 19 38383286 38383286 C A WDR87 Missense_Mutation p.E980D 0.42 benign(0.009) TCGA-AA-3510-01 19 38383508 38383508 C T WDR87 Silent p.G906G 0.46 TCGA-AA-3510-01 19 38706885 38706885 C T DPF1 Missense_Mutation p.D292N 0.25 tolerated(0.15) probably_damaging(0.918) TCGA-AA-3510-01 19 38800343 38800343 G A YIF1B Intron 0.46 TCGA-AA-3510-01 19 38847170 38847170 C T CATSPERG Silent p.C394C 0.38 TCGA-AA-3510-01 19 38996553 38996553 G T RYR1 Missense_Mutation p.K2836N 0.24 benign(0.127) TCGA-AA-3510-01 19 39010064 39010064 C T RYR1 Missense_Mutation p.P3410L 0.24 benign(0.023) TCGA-AA-3510-01 19 39062778 39062778 C T RYR1 Silent p.G4622G 0.19 TCGA-AA-3510-01 19 39292638 39292638 G T LGALS4 Missense_Mutation p.F273L 0.40 deleterious(0.02) benign(0.435) TCGA-AA-3510-01 19 39435660 39435660 G T CTC-360G5.8 Missense_Mutation p.F119L 0.40 deleterious_low_confidence(0.01) benign(0.006) TCGA-AA-3510-01 19 39516148 39516148 G T FBXO27 Missense_Mutation p.S252Y 0.44 deleterious(0.01) probably_damaging(0.915) TCGA-AA-3510-01 19 39760679 39760679 G T IFNL2 3'UTR 0.36 TCGA-AA-3510-01 19 39905894 39905894 C T PLEKHG2 Silent p.I124I 0.24 TCGA-AA-3510-01 19 39914971 39914971 C T PLEKHG2 Silent p.G1066G 0.37 TCGA-AA-3510-01 19 40321053 40321053 C T DYRK1B Missense_Mutation p.E112K 0.30 tolerated(0.11) benign(0.018) TCGA-AA-3510-01 19 40519610 40519610 G A ZNF546 Missense_Mutation p.E145K 0.40 tolerated(0.47) benign(0.292) TCGA-AA-3510-01 19 40704385 40704385 C T MAP3K10 Silent p.S262S 0.37 TCGA-AA-3510-01 19 41726545 41726545 G A AXL Silent p.T30T 0.38 TCGA-AA-3510-01 19 41754439 41754439 G A AXL Missense_Mutation p.E520K 0.27 tolerated(0.07) benign(0.161) TCGA-AA-3510-01 19 42462442 42462442 G T RABAC1 Silent p.L121L 0.13 TCGA-AA-3510-01 19 42582793 42582793 T A ZNF574 Missense_Mutation p.I12N 0.22 deleterious(0) possibly_damaging(0.781) TCGA-AA-3510-01 19 42855623 42855623 C T MEGF8 Silent p.C899C 0.36 TCGA-AA-3510-01 19 43371963 43371963 A C PSG1 3'UTR 0.09 TCGA-AA-3510-01 19 43411940 43411940 G A PSG6 Missense_Mutation p.A258V 0.28 tolerated(0.43) benign(0.063) TCGA-AA-3510-01 19 43512107 43512107 T G PSG11 3'UTR 0.13 TCGA-AA-3510-01 19 43568500 43568500 G T PSG2 3'UTR 0.23 TCGA-AA-3510-01 19 44611289 44611289 C T ZNF224 Missense_Mutation p.R326C 0.38 tolerated(0.1) possibly_damaging(0.892) TCGA-AA-3510-01 19 44771213 44771213 C A ZNF233 Intron 0.28 TCGA-AA-3510-01 19 44980568 44980568 A T ZNF180 3'UTR 0.14 TCGA-AA-3510-01 19 44981346 44981346 T G ZNF180 Missense_Mutation p.K451T 0.08 tolerated(0.21) probably_damaging(0.95) TCGA-AA-3510-01 19 44981496 44981496 C A ZNF180 Missense_Mutation p.R401I 0.20 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 19 45452065 45452065 G A APOC2 Missense_Mutation p.A55T 0.37 tolerated(0.09) probably_damaging(0.999) TCGA-AA-3510-01 19 45594156 45594156 G T GEMIN7 3'UTR 0.31 TCGA-AA-3510-01 19 45916917 45916917 C A ERCC1 Missense_Mutation p.K287N 0.37 deleterious(0.01) benign(0.014) TCGA-AA-3510-01 19 46664062 46664062 G A IGFL2 Missense_Mutation p.D100N 0.11 tolerated(0.06) benign(0.065) TCGA-AA-3510-01 19 46915776 46915776 C T CCDC8 Missense_Mutation p.D98N 0.27 probably_damaging(1) TCGA-AA-3510-01 19 47260223 47260223 C T FKRP 3'UTR 0.40 TCGA-AA-3510-01 19 49377202 49377202 G T PPP1R15A Nonsense_Mutation p.E238* 0.23 TCGA-AA-3510-01 19 49388771 49388771 T G TULP2 Missense_Mutation p.N332T 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 19 49842036 49842036 G A CD37 Missense_Mutation p.R176H 0.60 tolerated(0.48) benign(0.011) TCGA-AA-3510-01 19 50548928 50548928 A C ZNF473 Missense_Mutation p.K410Q 0.09 deleterious(0) benign(0.416) TCGA-AA-3510-01 19 50926190 50926190 G A SPIB Missense_Mutation p.E79K 0.37 tolerated(0.91) benign(0.009) TCGA-AA-3510-01 19 51214642 51214642 C T SHANK1 Missense_Mutation p.A355T 0.32 probably_damaging(0.969) TCGA-AA-3510-01 19 51217446 51217446 A G SHANK1 Silent p.D211D 0.26 TCGA-AA-3510-01 19 51274652 51274652 C A GPR32 Missense_Mutation p.F265L 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3510-01 19 51532706 51532706 G T KLK12 Missense_Mutation p.S200Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 19 51957546 51957546 G A SIGLEC8 Missense_Mutation p.S391L 0.26 tolerated(0.07) possibly_damaging(0.825) TCGA-AA-3510-01 19 52090212 52090212 G T ZNF175 Nonsense_Mutation p.E210* 0.16 TCGA-AA-3510-01 19 52091068 52091068 G A ZNF175 Missense_Mutation p.R495Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 19 52273311 52273311 T G FPR2 3'UTR 0.30 TCGA-AA-3510-01 19 52327297 52327297 A C FPR3 Missense_Mutation p.K99T 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 19 52329254 52329254 C T FPR3 3'UTR 0.35 TCGA-AA-3510-01 19 52468777 52468777 C T ZNF350 Missense_Mutation p.R310Q 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3510-01 19 52537754 52537754 C T ZNF432 Missense_Mutation p.R393Q 0.46 tolerated(0.06) benign(0.446) TCGA-AA-3510-01 19 52569127 52569127 T G ZNF841 Missense_Mutation p.K670Q 0.34 tolerated(0.34) benign(0.061) TCGA-AA-3510-01 19 52671391 52671391 C A ZNF836 5'UTR 0.33 TCGA-AA-3510-01 19 52869461 52869461 G A ZNF610 Missense_Mutation p.R277Q 0.33 tolerated(0.65) benign(0.006) TCGA-AA-3510-01 19 53270577 53270577 C T ZNF600 Silent p.P144P 0.34 TCGA-AA-3510-01 19 53432197 53432197 T G ZNF321P Missense_Mutation p.K221Q 0.28 tolerated(0.16) possibly_damaging(0.477) TCGA-AA-3510-01 19 53453375 53453375 G A ZNF816 Silent p.C551C 0.35 TCGA-AA-3510-01 19 53453442 53453442 C A ZNF816 Missense_Mutation p.R529I 0.30 tolerated(0.12) benign(0.008) TCGA-AA-3510-01 19 53472491 53472491 G A ZNF702P RNA 0.44 TCGA-AA-3510-01 19 53572705 53572705 A C ZNF160 Nonsense_Mutation p.L361* 0.27 TCGA-AA-3510-01 19 53572898 53572898 G A ZNF160 Missense_Mutation p.R297C 0.35 tolerated(0.07) benign(0.234) TCGA-AA-3510-01 19 53644803 53644803 C A ZNF347 Missense_Mutation p.E427D 0.29 deleterious(0.01) benign(0.124) TCGA-AA-3510-01 19 53645744 53645744 A C ZNF347 Missense_Mutation p.F114V 0.30 deleterious(0.01) benign(0.197) TCGA-AA-3510-01 19 53740037 53740037 C A ZNF677 3'UTR 0.56 TCGA-AA-3510-01 19 53762394 53762394 G T VN1R2 Nonsense_Mutation p.E256* 0.34 TCGA-AA-3510-01 19 53913063 53913063 T G ZNF765 3'UTR 0.30 TCGA-AA-3510-01 19 53958240 53958240 T C ZNF761 RNA 0.09 TCGA-AA-3510-01 19 53958303 53958303 C A ZNF761 RNA 0.35 TCGA-AA-3510-01 19 53995003 53995003 G A ZNF813 Missense_Mutation p.R506Q 0.20 tolerated(1) benign(0.006) TCGA-AA-3510-01 19 54080487 54080487 C T ZNF331 Missense_Mutation p.R225W 0.32 tolerated(0.16) probably_damaging(0.983) TCGA-AA-3510-01 19 54310827 54310827 C T NLRP12 Missense_Mutation p.R722Q 0.26 tolerated(0.57) possibly_damaging(0.747) TCGA-AA-3510-01 19 54561969 54561969 C T VSTM1 Missense_Mutation p.E18K 0.28 tolerated(0.05) possibly_damaging(0.905) TCGA-AA-3510-01 19 54783290 54783290 G A LILRB2 Missense_Mutation p.R190C 0.25 tolerated(0.05) benign(0.037) TCGA-AA-3510-01 19 55021893 55021893 C T LAIR2 3'UTR 0.38 TCGA-AA-3510-01 19 55048275 55048275 C A KIR3DX1 Missense_Mutation p.S281Y 0.27 tolerated(0.09) possibly_damaging(0.871) TCGA-AA-3510-01 19 55147549 55147549 G T AC009892.10 Intron 0.26 TCGA-AA-3510-01 19 55349112 55349112 C T KIR2DS4 Missense_Mutation p.S51L 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3510-01 19 55377994 55377994 C T KIR3DL2 Silent p.D392D 0.30 TCGA-AA-3510-01 19 55399649 55399649 C T FCAR Missense_Mutation p.L213F 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3510-01 19 55449588 55449588 C T NLRP7 Silent p.P651P 0.32 TCGA-AA-3510-01 19 55450382 55450382 G A NLRP7 Missense_Mutation p.S602F 0.28 tolerated(0.57) benign(0.002) TCGA-AA-3510-01 19 55452826 55452826 T G NLRP7 Missense_Mutation p.K85T 0.39 deleterious(0.01) benign(0.315) TCGA-AA-3510-01 19 55481608 55481608 C A NLRP2 Silent p.V75V 0.38 TCGA-AA-3510-01 19 55512175 55512175 A G NLRP2 Missense_Mutation p.E1033G 0.35 deleterious(0.01) possibly_damaging(0.703) TCGA-AA-3510-01 19 55512247 55512247 C A NLRP2 Missense_Mutation p.S1057Y 0.31 tolerated(0.59) benign(0.014) TCGA-AA-3510-01 19 55604178 55604178 G A PPP1R12C Silent p.V628V 0.30 TCGA-AA-3510-01 19 55915738 55915738 T C UBE2S Missense_Mutation p.N87S 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 19 56029661 56029661 T C SSC5D Missense_Mutation p.S1340P 0.18 unknown(0) TCGA-AA-3510-01 19 56196967 56196967 C T EPN1 Missense_Mutation p.A256V 0.41 tolerated(0.14) unknown(0) TCGA-AA-3510-01 19 56243688 56243688 G A NLRP9 Silent p.I503I 0.22 TCGA-AA-3510-01 19 56321612 56321612 G A NLRP11 Missense_Mutation p.R122C 0.38 tolerated(0.1) benign(0) TCGA-AA-3510-01 19 56423227 56423227 C A NLRP13 Missense_Mutation p.K652N 0.09 tolerated(0.25) benign(0.205) TCGA-AA-3510-01 19 56443517 56443517 C T NLRP13 Missense_Mutation p.R54H 0.33 tolerated(0.16) benign(0.001) TCGA-AA-3510-01 19 56467030 56467030 G A NLRP8 Missense_Mutation p.V536M 0.46 tolerated(0.25) benign(0.002) TCGA-AA-3510-01 19 56953266 56953266 G T ZNF667 Missense_Mutation p.F366L 0.34 tolerated(0.32) benign(0) TCGA-AA-3510-01 19 57089719 57089719 G T ZNF470 Missense_Mutation p.R641I 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-AA-3510-01 19 57089887 57089887 G A ZNF470 Missense_Mutation p.R697Q 0.31 tolerated(0.1) benign(0.001) TCGA-AA-3510-01 19 57176391 57176391 C T ZNF835 Missense_Mutation p.R59Q 0.34 tolerated(0.5) benign(0.008) TCGA-AA-3510-01 19 57640121 57640121 C A USP29 Silent p.L26L 0.32 TCGA-AA-3510-01 19 57646580 57646580 C A ZIM3 Missense_Mutation p.K375N 0.08 deleterious(0.01) benign(0.304) TCGA-AA-3510-01 19 57665801 57665801 G T DUXA Missense_Mutation p.F198L 0.21 tolerated_low_confidence(0.2) benign(0.001) TCGA-AA-3510-01 19 57723439 57723439 G A ZNF264 Missense_Mutation p.R325Q 0.24 tolerated(0.09) benign(0.273) TCGA-AA-3510-01 19 57802428 57802428 C T ZNF460 Silent p.F173F 0.22 TCGA-AA-3510-01 19 57910368 57910368 C T ZNF548 Missense_Mutation p.A250V 0.14 tolerated(0.28) possibly_damaging(0.88) TCGA-AA-3510-01 19 57985398 57985398 G A ZNF772 Silent p.F238F 0.20 TCGA-AA-3510-01 19 57986454 57986454 A G ZNF772 Missense_Mutation p.V87A 0.15 tolerated(0.06) benign(0.001) TCGA-AA-3510-01 19 58004786 58004786 T G ZNF419 Missense_Mutation p.F288L 0.25 deleterious(0.01) possibly_damaging(0.856) TCGA-AA-3510-01 19 58005132 58005132 G T ZNF419 Nonsense_Mutation p.E404* 0.30 TCGA-AA-3510-01 19 58046622 58046622 G A ZNF549 Silent p.S61S 0.29 TCGA-AA-3510-01 19 58049504 58049504 C T ZNF549 Nonsense_Mutation p.R378* 0.15 TCGA-AA-3510-01 19 58083770 58083770 T G ZNF416 Missense_Mutation p.K501T 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 19 58117489 58117489 T G ZNF530 Missense_Mutation p.I199S 0.36 tolerated(0.51) benign(0.084) TCGA-AA-3510-01 19 58232421 58232421 C T ZNF671 Missense_Mutation p.E345K 0.36 tolerated(0.15) possibly_damaging(0.712) TCGA-AA-3510-01 19 58290826 58290826 G T ZNF586 Nonsense_Mutation p.E291* 0.10 TCGA-AA-3510-01 19 5831642 5831642 C T FUT6 Missense_Mutation p.A313T 0.18 tolerated(0.5) benign(0.034) TCGA-AA-3510-01 19 58371468 58371468 T A ZNF587 Missense_Mutation p.L563H 0.09 deleterious(0.02) probably_damaging(0.962) TCGA-AA-3510-01 19 58384908 58384908 C T ZNF814 Missense_Mutation p.R617H 0.19 tolerated(0.13) benign(0.083) TCGA-AA-3510-01 19 58385598 58385598 T G ZNF814 Missense_Mutation p.K387T 0.19 deleterious(0) possibly_damaging(0.858) TCGA-AA-3510-01 19 58437549 58437549 C A ZNF418 Missense_Mutation p.R667I 0.18 deleterious(0.02) possibly_damaging(0.811) TCGA-AA-3510-01 19 58490989 58490989 G T ZNF606 Silent p.I353I 0.23 TCGA-AA-3510-01 19 58551841 58551841 G A ZSCAN1 Missense_Mutation p.E132K 0.39 tolerated(0.38) benign(0.2) TCGA-AA-3510-01 19 58578252 58578252 G A ZNF135 Missense_Mutation p.E158K 0.21 tolerated(0.3) benign(0.088) TCGA-AA-3510-01 19 58579918 58579918 C T ZNF135 3'UTR 0.62 TCGA-AA-3510-01 19 58640435 58640435 G A ZNF329 Missense_Mutation p.P146S 0.13 tolerated(0.27) benign(0) TCGA-AA-3510-01 19 58858245 58858245 T G A1BG 3'UTR 0.53 TCGA-AA-3510-01 19 58991856 58991856 G A ZNF446 Silent p.E372E 0.29 TCGA-AA-3510-01 19 6141557 6141557 G T ACSBG2 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.009) TCGA-AA-3510-01 19 6165950 6165950 C T ACSBG2 Missense_Mutation p.A221V 0.15 tolerated(0.23) benign(0.104) TCGA-AA-3510-01 19 6415252 6415252 G A KHSRP Missense_Mutation p.A676V 0.24 tolerated(0.09) probably_damaging(0.918) TCGA-AA-3510-01 19 6470365 6470365 C T DENND1C Missense_Mutation p.A435T 0.40 deleterious(0.01) benign(0.207) TCGA-AA-3510-01 19 6471451 6471451 G A DENND1C Silent p.F405F 0.33 TCGA-AA-3510-01 19 6697724 6697724 C T C3 Missense_Mutation p.R841Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 19 6887590 6887590 C A EMR1 5'UTR 0.30 TCGA-AA-3510-01 19 6887595 6887595 C A EMR1 5'UTR 0.16 TCGA-AA-3510-01 19 7083273 7083273 C T ZNF557 Missense_Mutation p.R271C 0.10 deleterious(0) benign(0.272) TCGA-AA-3510-01 19 7267855 7267855 C T INSR Silent p.E51E 0.29 TCGA-AA-3510-01 19 7569038 7569038 G A C19orf45 Silent p.T203T 0.30 TCGA-AA-3510-01 19 7584216 7584216 G T ZNF358 Missense_Mutation p.D30Y 0.37 deleterious(0) possibly_damaging(0.751) TCGA-AA-3510-01 19 8188378 8188378 C T FBN3 Missense_Mutation p.A1018T 0.38 tolerated(0.13) benign(0.202) TCGA-AA-3510-01 19 8553592 8553592 G A HNRNPM Missense_Mutation p.D683N 0.32 deleterious(0) benign(0.308) TCGA-AA-3510-01 19 8612995 8612995 G A MYO1F Silent p.F398F 0.36 TCGA-AA-3510-01 19 8617025 8617025 G A MYO1F Silent p.F176F 0.48 TCGA-AA-3510-01 19 8979215 8979215 A C MUC16 Splice_Site p.X14052_splice 0.24 TCGA-AA-3510-01 19 9007545 9007545 C T MUC16 Nonsense_Mutation p.W13141* 0.11 TCGA-AA-3510-01 19 9046602 9046602 G A MUC16 Missense_Mutation p.R11677W 0.28 benign(0.098) TCGA-AA-3510-01 19 9071502 9071502 C T MUC16 Missense_Mutation p.G5315D 0.31 unknown(0) TCGA-AA-3510-01 19 9072118 9072118 C A MUC16 Missense_Mutation p.D5110Y 0.24 unknown(0) TCGA-AA-3510-01 19 9072635 9072635 A C MUC16 Missense_Mutation p.S4937R 0.32 unknown(0) TCGA-AA-3510-01 19 9088589 9088589 C A MUC16 Nonsense_Mutation p.E1076* 0.26 TCGA-AA-3510-01 19 9213084 9213084 G T OR7G2 Missense_Mutation p.S300Y 0.31 deleterious(0) benign(0.359) TCGA-AA-3510-01 19 9325058 9325058 A C OR7D4 Missense_Mutation p.I152M 0.22 tolerated(0.3) benign(0.091) TCGA-AA-3510-01 19 9406189 9406189 G A ZNF699 Nonsense_Mutation p.R631* 0.37 TCGA-AA-3510-01 19 9491907 9491907 G T ZNF177 Missense_Mutation p.K300N 0.30 tolerated(0.11) probably_damaging(0.997) TCGA-AA-3510-01 19 9523820 9523820 G T ZNF266 3'UTR 0.33 TCGA-AA-3510-01 19 9523995 9523995 G A ZNF266 Nonsense_Mutation p.R536* 0.47 TCGA-AA-3510-01 19 9577932 9577932 C T ZNF560 Missense_Mutation p.R564Q 0.09 deleterious(0.02) possibly_damaging(0.88) TCGA-AA-3510-01 19 9801607 9801607 T G ZNF812 Missense_Mutation p.K191T 0.32 tolerated(0.07) probably_damaging(0.996) TCGA-AA-3510-01 19 9868260 9868260 C T ZNF846 Missense_Mutation p.R498Q 0.34 tolerated(0.06) possibly_damaging(0.646) TCGA-AA-3510-01 1 100159725 100159725 C T PALMD 3'UTR 0.38 TCGA-AA-3510-01 1 100585954 100585954 C T SASS6 Missense_Mutation p.R182Q 0.31 tolerated(1) benign(0) TCGA-AA-3510-01 1 100756976 100756976 G T RTCA Missense_Mutation p.K352N 0.13 tolerated(0.3) benign(0.007) TCGA-AA-3510-01 1 100757079 100757079 G T RTCA 3'UTR 0.21 TCGA-AA-3510-01 1 100984014 100984014 G T CDC14A 3'UTR 0.15 TCGA-AA-3510-01 1 101006329 101006329 A C GPR88 3'UTR 0.09 TCGA-AA-3510-01 1 101006613 101006613 C A GPR88 3'UTR 0.42 TCGA-AA-3510-01 1 103347295 103347295 C A COL11A1 Missense_Mutation p.E1666D 0.30 unknown(0) TCGA-AA-3510-01 1 103488405 103488405 C T COL11A1 Missense_Mutation p.E380K 0.28 probably_damaging(0.914) TCGA-AA-3510-01 1 107691452 107691452 C A NTNG1 Missense_Mutation p.F79L 0.33 deleterious(0.04) benign(0.02) TCGA-AA-3510-01 1 109444432 109444432 G A GPSM2 Missense_Mutation p.R273Q 0.09 tolerated(0.27) possibly_damaging(0.902) TCGA-AA-3510-01 1 109514192 109514192 C T WDR47 Missense_Mutation p.D882N 0.24 deleterious(0) possibly_damaging(0.77) TCGA-AA-3510-01 1 109803785 109803785 C T CELSR2 Silent p.F1360F 0.09 TCGA-AA-3510-01 1 110031015 110031015 C T ATXN7L2 Silent p.C237C 0.37 TCGA-AA-3510-01 1 110038964 110038964 G T CYB561D1 3'UTR 0.18 TCGA-AA-3510-01 1 110128870 110128870 G A GNAI3 Missense_Mutation p.R208Q 0.36 deleterious(0.02) probably_damaging(0.922) TCGA-AA-3510-01 1 110230504 110230504 G T GSTM1 Missense_Mutation p.M3I 0.32 tolerated(0.1) benign(0.077) TCGA-AA-3510-01 1 110590170 110590170 G T STRIP1 Nonsense_Mutation p.E499* 0.27 TCGA-AA-3510-01 1 11087511 11087511 G A MASP2 Nonsense_Mutation p.R498* 0.34 TCGA-AA-3510-01 1 111216333 111216333 G A KCNA3 Missense_Mutation p.R367C 0.44 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 111660882 111660882 G T DRAM2 Missense_Mutation p.S234Y 0.26 deleterious(0.04) benign(0.04) TCGA-AA-3510-01 1 111734908 111734908 C T DENND2D Missense_Mutation p.A276T 0.13 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 1 111770292 111770292 G A CHI3L2 5'UTR 0.48 TCGA-AA-3510-01 1 111964072 111964072 C A OVGP1 Missense_Mutation p.M243I 0.41 tolerated(0.08) possibly_damaging(0.552) TCGA-AA-3510-01 1 11250009 11250009 G A ANGPTL7 Missense_Mutation p.A125T 0.46 tolerated(0.23) benign(0.254) TCGA-AA-3510-01 1 11298651 11298651 G A MTOR Missense_Mutation p.R604C 0.39 deleterious(0) possibly_damaging(0.53) TCGA-AA-3510-01 1 113459751 113459751 A G SLC16A1 Intron 0.29 TCGA-AA-3510-01 1 11346072 11346072 C T UBIAD1 Nonsense_Mutation p.R301* 0.10 TCGA-AA-3510-01 1 113641350 113641350 C A LRIG2 Nonsense_Mutation p.S372* 0.33 TCGA-AA-3510-01 1 114340485 114340485 G C RSBN1 Missense_Mutation p.L293V 0.11 tolerated_low_confidence(0.06) benign(0.203) TCGA-AA-3510-01 1 114442687 114442687 A C AP4B1 Missense_Mutation p.F318C 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 114523619 114523619 G A OLFML3 Missense_Mutation p.R150Q 0.41 deleterious(0.01) benign(0.092) TCGA-AA-3510-01 1 114973498 114973498 T G TRIM33 Missense_Mutation p.E359D 0.27 deleterious(0.02) probably_damaging(0.978) TCGA-AA-3510-01 1 114976295 114976295 C T TRIM33 Silent p.A328A 0.14 TCGA-AA-3510-01 1 115223060 115223060 C T AMPD1 Missense_Mutation p.R229Q 0.41 tolerated(0.49) benign(0.001) TCGA-AA-3510-01 1 115268902 115268902 C T CSDE1 Missense_Mutation p.A570T 0.44 deleterious(0.01) possibly_damaging(0.81) TCGA-AA-3510-01 1 115420763 115420763 G T SYCP1 Missense_Mutation p.D284Y 0.33 deleterious(0) probably_damaging(0.975) TCGA-AA-3510-01 1 115428915 115428915 G T SYCP1 Missense_Mutation p.R392I 0.32 tolerated(0.09) benign(0.328) TCGA-AA-3510-01 1 115489938 115489938 G A SYCP1 Silent p.E773E 0.31 TCGA-AA-3510-01 1 11596388 11596388 G A PTCHD2 Missense_Mutation p.R1275Q 0.19 tolerated(0.59) benign(0.072) TCGA-AA-3510-01 1 116563400 116563400 C A SLC22A15 Missense_Mutation p.F164L 0.52 tolerated(0.45) benign(0.003) TCGA-AA-3510-01 1 116944185 116944185 C A ATP1A1 Silent p.I953I 0.06 TCGA-AA-3510-01 1 118008968 118008968 C T MAN1A2 Missense_Mutation p.R363W 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 118496664 118496664 G A WDR3 Missense_Mutation p.R768Q 0.27 tolerated(0.11) benign(0.047) TCGA-AA-3510-01 1 118584528 118584528 C A SPAG17 Missense_Mutation p.K984N 0.34 tolerated(0.08) probably_damaging(0.976) TCGA-AA-3510-01 1 118617167 118617167 C A SPAG17 Nonsense_Mutation p.E756* 0.27 TCGA-AA-3510-01 1 118727737 118727737 G T SPAG17 Missense_Mutation p.S15Y 0.31 tolerated(0.08) benign(0.007) TCGA-AA-3510-01 1 120057080 120057080 C T HSD3B1 Nonsense_Mutation p.R312* 0.36 TCGA-AA-3510-01 1 120263650 120263650 G T PHGDH Intron 0.26 TCGA-AA-3510-01 1 120279853 120279853 C T PHGDH Silent p.F303F 0.15 TCGA-AA-3510-01 1 120295927 120295927 G A HMGCS2 Nonsense_Mutation p.R424* 0.11 TCGA-AA-3510-01 1 120839893 120839893 C A FAM72B Missense_Mutation p.F20L 0.12 deleterious(0.05) possibly_damaging(0.74) TCGA-AA-3510-01 1 12854157 12854157 G T PRAMEF1 Missense_Mutation p.E127D 0.31 tolerated(0.2) probably_damaging(0.939) TCGA-AA-3510-01 1 12908319 12908319 G T HNRNPCL1 5'UTR 0.12 TCGA-AA-3510-01 1 13802361 13802361 C T LRRC38 Missense_Mutation p.A280T 0.38 tolerated(0.25) benign(0.027) TCGA-AA-3510-01 1 1387470 1387470 G T ATAD3C Missense_Mutation p.Q40H 0.38 deleterious(0) possibly_damaging(0.827) TCGA-AA-3510-01 1 1398007 1398007 C T ATAD3C Silent p.Y336Y 0.40 TCGA-AA-3510-01 1 14108623 14108623 G A PRDM2 Missense_Mutation p.D1445N 0.29 unknown(0) TCGA-AA-3510-01 1 145112380 145112380 C A SEC22B RNA 0.10 TCGA-AA-3510-01 1 145487421 145487421 T C LIX1L Missense_Mutation p.V137A 0.29 deleterious(0) probably_damaging(0.932) TCGA-AA-3510-01 1 145516649 145516649 G T PEX11B Intron 0.26 TCGA-AA-3510-01 1 145558914 145558914 G A ANKRD35 Missense_Mutation p.R178Q 0.34 tolerated(0.22) possibly_damaging(0.857) TCGA-AA-3510-01 1 145578342 145578342 C T PIAS3 Missense_Mutation p.A102V 0.22 tolerated(0.5) benign(0.019) TCGA-AA-3510-01 1 146696744 146696744 C A FMO5 Intron 0.22 TCGA-AA-3510-01 1 146736083 146736083 C T CHD1L Silent p.F193F 0.35 TCGA-AA-3510-01 1 146759370 146759370 G A CHD1L Missense_Mutation p.A760T 0.10 tolerated(1) benign(0.002) TCGA-AA-3510-01 1 147381249 147381249 G T GJA8 Missense_Mutation p.E389D 0.15 tolerated(0.36) probably_damaging(0.97) TCGA-AA-3510-01 1 148017572 148017572 C T NBPF14 Silent p.S243S 0.10 TCGA-AA-3510-01 1 149884972 149884972 G A SV2A Nonsense_Mutation p.R141* 0.35 TCGA-AA-3510-01 1 150900404 150900404 G T SETDB1 Nonsense_Mutation p.E72* 0.38 TCGA-AA-3510-01 1 151020460 151020460 G A C1orf56 Missense_Mutation p.R46H 0.26 tolerated(0.06) probably_damaging(0.923) TCGA-AA-3510-01 1 151751267 151751267 G A TDRKH Silent p.G259G 0.29 TCGA-AA-3510-01 1 151774544 151774544 C A LINGO4 Nonsense_Mutation p.E213* 0.10 TCGA-AA-3510-01 1 151991229 151991229 G T NBPF18P RNA 0.34 TCGA-AA-3510-01 1 152329475 152329475 G A FLG2 Missense_Mutation p.L263F 0.29 unknown(0) TCGA-AA-3510-01 1 152538664 152538664 C A LCE3E Missense_Mutation p.Q7H 0.13 deleterious_low_confidence(0) unknown(0) TCGA-AA-3510-01 1 152733640 152733640 G A KPRP Missense_Mutation p.E526K 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.81) TCGA-AA-3510-01 1 152770480 152770480 C T LCE1D Silent p.G70G 0.80 TCGA-AA-3510-01 1 153303307 153303307 C A PGLYRP4 Missense_Mutation p.R353L 0.35 deleterious(0.02) benign(0.024) TCGA-AA-3510-01 1 153587810 153587810 G T S100A14 Silent p.I26I 0.44 TCGA-AA-3510-01 1 153912996 153912996 G T DENND4B Missense_Mutation p.F471L 0.34 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 1 153932454 153932454 G T SLC39A1 3'UTR 0.40 TCGA-AA-3510-01 1 153991414 153991414 G A NUP210L Nonsense_Mutation p.R1550* 0.34 TCGA-AA-3510-01 1 154110676 154110676 C A NUP210L Missense_Mutation p.E252D 0.30 deleterious(0.02) benign(0.077) TCGA-AA-3510-01 1 154304480 154304480 A C ATP8B2 Silent p.I196I 0.35 TCGA-AA-3510-01 1 154321432 154321432 C T ATP8B2 Silent p.F1170F 0.25 TCGA-AA-3510-01 1 154422408 154422408 G A IL6R Missense_Mutation p.D340N 0.45 tolerated(0.59) benign(0.003) TCGA-AA-3510-01 1 154525590 154525590 T G UBE2Q1 Missense_Mutation p.K216T 0.36 deleterious(0.05) benign(0.086) TCGA-AA-3510-01 1 154561108 154561108 G A ADAR Missense_Mutation p.A935V 0.29 deleterious(0.01) possibly_damaging(0.876) TCGA-AA-3510-01 1 154573576 154573576 G A ADAR Silent p.F514F 0.32 TCGA-AA-3510-01 1 155233149 155233149 C T CLK2 Missense_Mutation p.D453N 0.12 tolerated(0.07) benign(0.015) TCGA-AA-3510-01 1 155261583 155261583 C A PKLR Missense_Mutation p.D528Y 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 155287738 155287738 G A FDPS Missense_Mutation p.A163T 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3510-01 1 155448852 155448852 C T ASH1L Missense_Mutation p.R1270Q 0.43 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-AA-3510-01 1 155451479 155451479 A C ASH1L Missense_Mutation p.S394R 0.30 tolerated_low_confidence(0.06) benign(0.053) TCGA-AA-3510-01 1 155491188 155491188 T G ASH1L Missense_Mutation p.K41N 0.09 tolerated_low_confidence(0.46) benign(0) TCGA-AA-3510-01 1 155646398 155646398 G T YY1AP1 Missense_Mutation p.H227N 0.39 tolerated(0.3) benign(0.185) TCGA-AA-3510-01 1 155697422 155697422 C T DAP3 Missense_Mutation p.R166W 0.31 tolerated(0.07) benign(0.037) TCGA-AA-3510-01 1 155736404 155736404 G A GON4L Nonsense_Mutation p.R954* 0.38 TCGA-AA-3510-01 1 155979026 155979026 G T SSR2 3'UTR 0.38 TCGA-AA-3510-01 1 15627752 15627752 G T FHAD1 5'Flank 0.41 TCGA-AA-3510-01 1 156778993 156778993 A C SH2D2A Splice_Site p.X344_splice 0.30 TCGA-AA-3510-01 1 156884582 156884582 G A PEAR1 Missense_Mutation p.D1036N 0.43 tolerated(0.08) probably_damaging(0.997) TCGA-AA-3510-01 1 156884628 156884628 C T PEAR1 3'UTR 0.44 TCGA-AA-3510-01 1 156899448 156899448 G T LRRC71 Missense_Mutation p.E389D 0.31 tolerated(0.14) probably_damaging(0.939) TCGA-AA-3510-01 1 157512686 157512686 G A FCRL5 Silent p.G362G 0.32 TCGA-AA-3510-01 1 157514737 157514737 C A FCRL5 Missense_Mutation p.R148I 0.39 tolerated(0.19) benign(0.016) TCGA-AA-3510-01 1 157646531 157646531 G T FCRL3 3'UTR 0.22 TCGA-AA-3510-01 1 158325884 158325884 T G CD1E Missense_Mutation p.I298S 0.16 deleterious(0) possibly_damaging(0.729) TCGA-AA-3510-01 1 158325952 158325952 A C CD1E Intron 0.27 TCGA-AA-3510-01 1 158326593 158326593 G T CD1E Missense_Mutation p.K358N 0.30 tolerated(0.07) benign(0) TCGA-AA-3510-01 1 158368428 158368428 T C OR10T2 Missense_Mutation p.T277A 0.27 deleterious(0.03) possibly_damaging(0.623) TCGA-AA-3510-01 1 158592806 158592806 C A SPTA1 Missense_Mutation p.Q2029H 0.30 deleterious(0.03) benign(0.025) TCGA-AA-3510-01 1 158736203 158736203 C A OR6N1 Missense_Mutation p.K90N 0.10 deleterious(0.03) probably_damaging(0.979) TCGA-AA-3510-01 1 158943512 158943512 C A PYHIN1 Missense_Mutation p.L479I 0.23 tolerated_low_confidence(0.12) benign(0) TCGA-AA-3510-01 1 159035923 159035923 T C AIM2 Missense_Mutation p.K198R 0.29 deleterious(0.04) benign(0.212) TCGA-AA-3510-01 1 159277653 159277653 G T FCER1A Missense_Mutation p.K235N 0.35 deleterious(0.01) probably_damaging(0.951) TCGA-AA-3510-01 1 159778872 159778872 C A FCRL6 Missense_Mutation p.F147L 0.18 deleterious(0.04) possibly_damaging(0.677) TCGA-AA-3510-01 1 160252269 160252269 C T PEX19 Missense_Mutation p.E124K 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-AA-3510-01 1 160253413 160253413 G A PEX19 Silent p.F29F 0.32 TCGA-AA-3510-01 1 160276982 160276982 G A COPA Missense_Mutation p.R425W 0.39 deleterious(0) probably_damaging(0.981) TCGA-AA-3510-01 1 160523719 160523719 A C CD84 Missense_Mutation p.N202K 0.13 deleterious(0.01) possibly_damaging(0.589) TCGA-AA-3510-01 1 160607157 160607157 G A SLAMF1 Missense_Mutation p.S80F 0.36 tolerated(0.07) probably_damaging(1) TCGA-AA-3510-01 1 160720183 160720183 C A SLAMF7 Missense_Mutation p.L247I 0.36 tolerated(0.86) benign(0.003) TCGA-AA-3510-01 1 160808248 160808248 C A CD244 Missense_Mutation p.R281I 0.39 deleterious(0.01) probably_damaging(0.952) TCGA-AA-3510-01 1 161007603 161007603 C T TSTD1 Missense_Mutation p.A104T 0.34 tolerated(0.15) benign(0.02) TCGA-AA-3510-01 1 161199399 161199399 G T TOMM40L 3'UTR 0.45 TCGA-AA-3510-01 1 161512646 161512646 G T FCGR3A 3'UTR 0.22 TCGA-AA-3510-01 1 161559502 161559502 C T RP11-25K21.6 Intron 0.21 TCGA-AA-3510-01 1 161559503 161559503 G A RP11-25K21.6 Intron 0.24 TCGA-AA-3510-01 1 161642908 161642908 C T FCGR2B Missense_Mutation p.P179S 0.11 tolerated(1) benign(0.003) TCGA-AA-3510-01 1 161969922 161969922 C A OLFML2B Missense_Mutation p.E310D 0.26 tolerated(0.38) benign(0.022) TCGA-AA-3510-01 1 161969972 161969972 T C OLFML2B Missense_Mutation p.T294A 0.41 tolerated(0.24) benign(0.068) TCGA-AA-3510-01 1 162560164 162560164 G A UAP1 Silent p.K407K 0.45 TCGA-AA-3510-01 1 162769628 162769628 C T HSD17B7 Silent p.L181L 0.36 TCGA-AA-3510-01 1 16332583 16332583 C T C1orf64 Silent p.F84F 0.33 TCGA-AA-3510-01 1 165386374 165386374 G A RXRG Missense_Mutation p.R176W 0.23 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 1 165721402 165721402 C T TMCO1 Missense_Mutation p.R138Q 0.09 deleterious(0.01) possibly_damaging(0.51) TCGA-AA-3510-01 1 167083038 167083038 G T DUSP27 Nonsense_Mutation p.E68* 0.22 TCGA-AA-3510-01 1 167095616 167095616 G T DUSP27 Missense_Mutation p.E416D 0.38 tolerated(0.32) benign(0.005) TCGA-AA-3510-01 1 167096020 167096020 G T DUSP27 Missense_Mutation p.R551I 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 1 167793977 167793977 G A ADCY10 Silent p.G1289G 0.33 TCGA-AA-3510-01 1 16921444 16921444 G T NBPF1 5'UTR 0.07 TCGA-AA-3510-01 1 169483443 169483443 G T F5 3'UTR 0.58 TCGA-AA-3510-01 1 169510846 169510846 C T F5 Missense_Mutation p.R1161Q 0.31 tolerated_low_confidence(0.58) benign(0.004) TCGA-AA-3510-01 1 169677694 169677694 C A SELL Missense_Mutation p.E125D 0.10 deleterious(0) possibly_damaging(0.524) TCGA-AA-3510-01 1 169694881 169694881 G T SELE 3'UTR 0.15 TCGA-AA-3510-01 1 169847945 169847945 G A SCYL3 Missense_Mutation p.R61C 0.16 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 170521360 170521360 C T GORAB Silent p.V314V 0.26 TCGA-AA-3510-01 1 170521409 170521409 C T GORAB Missense_Mutation p.R331C 0.33 tolerated_low_confidence(0.14) benign(0.024) TCGA-AA-3510-01 1 170695388 170695388 T C PRRX1 Missense_Mutation p.F149L 0.26 deleterious(0) probably_damaging(0.977) TCGA-AA-3510-01 1 17083625 17083625 A C MST1L RNA 0.11 TCGA-AA-3510-01 1 171165937 171165937 G A FMO2 Silent p.L157L 0.28 TCGA-AA-3510-01 1 171174461 171174461 C T FMO2 Missense_Mutation p.R291C 0.14 tolerated(0.47) benign(0.141) TCGA-AA-3510-01 1 171301933 171301933 G A FMO4 Missense_Mutation p.R238K 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3510-01 1 172222758 172222758 C T DNM3 Missense_Mutation p.R569W 0.25 deleterious(0) possibly_damaging(0.666) TCGA-AA-3510-01 1 172277995 172277995 C T DNM3 Intron 0.24 TCGA-AA-3510-01 1 172543041 172543041 G T SUCO Nonsense_Mutation p.E354* 0.30 TCGA-AA-3510-01 1 172560129 172560129 G A SUCO Missense_Mutation p.R944Q 0.30 deleterious(0) possibly_damaging(0.509) TCGA-AA-3510-01 1 172579305 172579305 C T SUCO Missense_Mutation p.S1224L 0.09 deleterious(0.02) possibly_damaging(0.711) TCGA-AA-3510-01 1 173157675 173157675 T G TNFSF4 Missense_Mutation p.K63Q 0.09 tolerated(0.19) benign(0) TCGA-AA-3510-01 1 173157689 173157689 C T TNFSF4 Missense_Mutation p.R58Q 0.24 tolerated(0.13) benign(0.048) TCGA-AA-3510-01 1 173506164 173506164 T C SLC9C2 Silent p.K524K 0.28 TCGA-AA-3510-01 1 173556913 173556913 G A SLC9C2 Silent p.V138V 0.08 TCGA-AA-3510-01 1 173567087 173567087 C T SLC9C2 Missense_Mutation p.A105T 0.36 deleterious(0) probably_damaging(0.964) TCGA-AA-3510-01 1 173685206 173685206 G T KLHL20 Splice_Site p.X8_splice 0.33 TCGA-AA-3510-01 1 173879062 173879062 A G SERPINC1 Missense_Mutation p.F261L 0.31 deleterious(0.03) probably_damaging(0.993) TCGA-AA-3510-01 1 17405743 17405743 G A PADI2 Intron 0.41 TCGA-AA-3510-01 1 174606564 174606564 G A RABGAP1L Missense_Mutation p.A588T 0.32 deleterious(0.02) probably_damaging(0.963) TCGA-AA-3510-01 1 174670224 174670224 C A RABGAP1L Intron 0.29 TCGA-AA-3510-01 1 175335148 175335148 G A TNR Missense_Mutation p.A727V 0.30 tolerated(0.2) benign(0.347) TCGA-AA-3510-01 1 176738763 176738763 T C PAPPA2 Silent p.C1448C 0.27 TCGA-AA-3510-01 1 176863876 176863876 C T ASTN1 Missense_Mutation p.G921D 0.19 tolerated(0.09) possibly_damaging(0.622) TCGA-AA-3510-01 1 17708567 17708567 C T PADI6 RNA 0.13 TCGA-AA-3510-01 1 177225144 177225144 G A BRINP2 Missense_Mutation p.R120Q 0.40 tolerated(0.05) probably_damaging(0.998) TCGA-AA-3510-01 1 17727796 17727796 C T PADI6 RNA 0.30 TCGA-AA-3510-01 1 179033215 179033215 G A FAM20B Missense_Mutation p.R243Q 0.38 tolerated(0.26) possibly_damaging(0.487) TCGA-AA-3510-01 1 179100566 179100566 C A ABL2 Nonsense_Mutation p.E91* 0.35 TCGA-AA-3510-01 1 179354496 179354496 T C AXDND1 Splice_Site p.X288_splice 0.32 TCGA-AA-3510-01 1 179398663 179398663 G T AXDND1 Missense_Mutation p.R414I 0.35 deleterious(0) benign(0.267) TCGA-AA-3510-01 1 179523778 179523778 A G AXDND1 3'UTR 0.30 TCGA-AA-3510-01 1 180063271 180063271 T G CEP350 Silent p.V2677V 0.24 TCGA-AA-3510-01 1 180235527 180235527 G A LHX4 Silent p.K83K 0.50 TCGA-AA-3510-01 1 180886031 180886031 C A KIAA1614 Silent p.V264V 0.35 TCGA-AA-3510-01 1 181018257 181018257 C T MR1 Missense_Mutation p.S46L 0.38 tolerated(0.1) probably_damaging(0.999) TCGA-AA-3510-01 1 181687211 181687211 C T CACNA1E Silent p.L516L 0.34 TCGA-AA-3510-01 1 181767784 181767784 C T CACNA1E Silent p.F2252F 0.47 TCGA-AA-3510-01 1 182520336 182520336 C T RGSL1 Missense_Mutation p.S1012L 0.19 tolerated(0.63) benign(0) TCGA-AA-3510-01 1 182811720 182811720 T G DHX9 Missense_Mutation p.F7V 0.25 deleterious(0.01) possibly_damaging(0.886) TCGA-AA-3510-01 1 182921884 182921884 C T SHCBP1L Missense_Mutation p.E129K 0.27 tolerated(0.23) benign(0.05) TCGA-AA-3510-01 1 183111704 183111704 G A LAMC1 Missense_Mutation p.E1537K 0.50 deleterious(0.03) benign(0.23) TCGA-AA-3510-01 1 183201921 183201921 C T LAMC2 Missense_Mutation p.R717W 0.35 deleterious(0) benign(0.339) TCGA-AA-3510-01 1 185113136 185113136 T G TRMT1L Missense_Mutation p.E227D 0.34 deleterious_low_confidence(0.03) benign(0.119) TCGA-AA-3510-01 1 185200713 185200713 G A SWT1 Missense_Mutation p.D772N 0.33 tolerated(0.07) possibly_damaging(0.542) TCGA-AA-3510-01 1 185880868 185880868 G T HMCN1 Missense_Mutation p.V286L 0.30 possibly_damaging(0.785) TCGA-AA-3510-01 1 185985251 185985251 G T HMCN1 Nonsense_Mutation p.E1691* 0.38 TCGA-AA-3510-01 1 186072784 186072784 G A HMCN1 Missense_Mutation p.R3585Q 0.30 benign(0.026) TCGA-AA-3510-01 1 186084498 186084498 G T HMCN1 Missense_Mutation p.R3838I 0.33 possibly_damaging(0.685) TCGA-AA-3510-01 1 186275793 186275793 G T PRG4 Missense_Mutation p.E314D 0.27 probably_damaging(0.96) TCGA-AA-3510-01 1 186304556 186304556 G A TPR Nonsense_Mutation p.R1609* 0.11 TCGA-AA-3510-01 1 186388262 186388262 G A C1orf27 3'UTR 0.26 TCGA-AA-3510-01 1 186648220 186648220 G A PTGS2 Nonsense_Mutation p.R95* 0.31 TCGA-AA-3510-01 1 193018904 193018904 C T UCHL5 Missense_Mutation p.R73Q 0.28 deleterious(0.03) probably_damaging(0.935) TCGA-AA-3510-01 1 193065766 193065766 C A GLRX2 Nonsense_Mutation p.E163* 0.32 TCGA-AA-3510-01 1 193219875 193219875 A G CDC73 3'UTR 0.12 TCGA-AA-3510-01 1 196648759 196648759 C A CFH Nonsense_Mutation p.S209* 0.25 TCGA-AA-3510-01 1 19666086 19666086 A C CAPZB 3'UTR 0.09 TCGA-AA-3510-01 1 196748978 196748978 G T CFHR3 Missense_Mutation p.R102I 0.60 tolerated(0.28) possibly_damaging(0.697) TCGA-AA-3510-01 1 197070336 197070336 C T ASPM Missense_Mutation p.R2682Q 0.34 deleterious(0.04) benign(0.074) TCGA-AA-3510-01 1 197073649 197073649 G A ASPM Nonsense_Mutation p.R1578* 0.33 TCGA-AA-3510-01 1 197404367 197404367 T C CRB1 Missense_Mutation p.F1125S 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 1 197411448 197411448 C A CRB1 Intron 0.35 TCGA-AA-3510-01 1 198233281 198233281 A C NEK7 Missense_Mutation p.K96N 0.37 deleterious(0.01) possibly_damaging(0.776) TCGA-AA-3510-01 1 198725060 198725060 T C PTPRC Missense_Mutation p.V1224A 0.29 tolerated(0.74) benign(0.006) TCGA-AA-3510-01 1 200014584 200014584 G A NR5A2 Missense_Mutation p.R112Q 0.12 deleterious(0) probably_damaging(0.973) TCGA-AA-3510-01 1 200529964 200529964 C A KIF14 Missense_Mutation p.K1372N 0.21 tolerated(0.58) benign(0.002) TCGA-AA-3510-01 1 200561331 200561331 C A KIF14 Missense_Mutation p.R897I 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 200562887 200562887 T G KIF14 Missense_Mutation p.N854H 0.10 tolerated(0.06) possibly_damaging(0.823) TCGA-AA-3510-01 1 200635209 200635209 T G DDX59 Missense_Mutation p.K220N 0.09 tolerated(0.4) benign(0.002) TCGA-AA-3510-01 1 201012453 201012453 G A CACNA1S Silent p.V1668V 0.20 TCGA-AA-3510-01 1 201047120 201047120 G A CACNA1S Silent p.F502F 0.39 TCGA-AA-3510-01 1 201286872 201286872 G T PKP1 Missense_Mutation p.R340I 0.29 tolerated(0.09) benign(0.247) TCGA-AA-3510-01 1 201352292 201352292 G A LAD1 Silent p.F432F 0.32 TCGA-AA-3510-01 1 201459325 201459325 G A CSRP1 Missense_Mutation p.S87L 0.26 tolerated(0.31) benign(0.003) TCGA-AA-3510-01 1 201869334 201869334 T G LMOD1 Missense_Mutation p.E269D 0.32 benign(0.002) TCGA-AA-3510-01 1 202097334 202097334 G A GPR37L1 Missense_Mutation p.V366M 0.29 deleterious(0) probably_damaging(0.954) TCGA-AA-3510-01 1 202715398 202715398 A G KDM5B Silent p.R690R 0.15 TCGA-AA-3510-01 1 203054999 203054999 C T MYOG Missense_Mutation p.E31K 0.37 deleterious(0.04) probably_damaging(0.974) TCGA-AA-3510-01 1 20417192 20417192 C A PLA2G5 3'UTR 0.19 TCGA-AA-3510-01 1 20442907 20442907 T C PLA2G2D Missense_Mutation p.K35R 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3510-01 1 204948149 204948149 G A NFASC Missense_Mutation p.V644M 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3510-01 1 20518675 20518675 C T UBXN10 3'UTR 0.28 TCGA-AA-3510-01 1 205312625 205312625 G A KLHDC8A Silent p.I36I 0.32 TCGA-AA-3510-01 1 206154103 206154103 T G FAM72A 3'UTR 0.10 TCGA-AA-3510-01 1 206821546 206821546 G A DYRK3 Missense_Mutation p.D335N 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 1 207071204 207071204 C T IL24 Silent p.S9S 0.40 TCGA-AA-3510-01 1 207646241 207646241 A G CR2 Silent p.E565E 0.33 TCGA-AA-3510-01 1 207680126 207680126 C T CR1 Silent p.F123F 0.36 TCGA-AA-3510-01 1 207680134 207680134 A C CR1 Missense_Mutation p.Q126P 0.36 tolerated(0.27) possibly_damaging(0.819) TCGA-AA-3510-01 1 208084434 208084434 C T CD34 5'UTR 0.20 TCGA-AA-3510-01 1 20879493 20879493 C T FAM43B Silent p.F9F 0.29 TCGA-AA-3510-01 1 209778918 209778918 C T CAMK1G Missense_Mutation p.R112W 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 1 20987793 20987793 C A DDOST Silent p.L34L 0.29 TCGA-AA-3510-01 1 209949011 209949011 A G TRAF3IP3 Missense_Mutation p.D328G 0.09 deleterious(0.04) benign(0.406) TCGA-AA-3510-01 1 209969757 209969757 C A IRF6 Missense_Mutation p.M105I 0.33 tolerated(0.5) benign(0.289) TCGA-AA-3510-01 1 21012619 21012619 C T KIF17 Missense_Mutation p.V647I 0.15 tolerated_low_confidence(0.39) benign(0.013) TCGA-AA-3510-01 1 21031083 21031083 C T KIF17 Missense_Mutation p.R327H 0.33 deleterious(0) probably_damaging(0.953) TCGA-AA-3510-01 1 210577963 210577963 C A HHAT Silent p.V209V 0.27 TCGA-AA-3510-01 1 210948723 210948723 C T KCNH1 Silent p.R693R 0.28 TCGA-AA-3510-01 1 211192496 211192496 C T KCNH1 Missense_Mutation p.D221N 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 1 211533365 211533365 C T TRAF5 Nonsense_Mutation p.R164* 0.35 TCGA-AA-3510-01 1 211748958 211748958 C T SLC30A1 Silent p.P432P 0.40 TCGA-AA-3510-01 1 212519209 212519209 G A PPP2R5A Missense_Mutation p.R213Q 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 212911764 212911764 T G NSL1 Missense_Mutation p.N278H 0.27 tolerated(0.15) benign(0.024) TCGA-AA-3510-01 1 214542937 214542937 C T PTPN14 Missense_Mutation p.R1045Q 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3510-01 1 214814931 214814931 G T CENPF Nonsense_Mutation p.E1084* 0.31 TCGA-AA-3510-01 1 214819293 214819293 G A CENPF Missense_Mutation p.R2127H 0.19 probably_damaging(0.998) TCGA-AA-3510-01 1 216166366 216166366 C T USH2A Silent p.P2267P 0.46 TCGA-AA-3510-01 1 216496929 216496929 G A USH2A Silent p.F479F 0.38 TCGA-AA-3510-01 1 216538337 216538337 C A USH2A Missense_Mutation p.D248Y 0.26 possibly_damaging(0.707) TCGA-AA-3510-01 1 217824446 217824446 A C SPATA17 Missense_Mutation p.N56H 0.34 tolerated(1) benign(0.004) TCGA-AA-3510-01 1 21795015 21795015 G A NBPF3 Intron 0.31 TCGA-AA-3510-01 1 220330741 220330741 T C RAB3GAP2 Silent p.E1142E 0.34 TCGA-AA-3510-01 1 220440069 220440069 C A RAB3GAP2 Intron 0.37 TCGA-AA-3510-01 1 220752730 220752730 T C MARK1 Missense_Mutation p.I29T 0.27 tolerated_low_confidence(0.77) benign(0.013) TCGA-AA-3510-01 1 222803107 222803107 G T MIA3 Missense_Mutation p.D849Y 0.20 deleterious(0) possibly_damaging(0.885) TCGA-AA-3510-01 1 222849489 222849489 A C AIDA Missense_Mutation p.L178V 0.06 deleterious(0) probably_damaging(0.947) TCGA-AA-3510-01 1 222892617 222892617 C A BROX Missense_Mutation p.S74Y 0.32 deleterious(0.03) possibly_damaging(0.786) TCGA-AA-3510-01 1 223285783 223285783 C T TLR5 Silent p.T197T 0.37 TCGA-AA-3510-01 1 223396682 223396682 C A SUSD4 Missense_Mutation p.E451D 0.17 tolerated(0.28) benign(0) TCGA-AA-3510-01 1 22416490 22416490 G A CDC42 Intron 0.41 TCGA-AA-3510-01 1 225548458 225548458 C A DNAH14 Missense_Mutation p.S3858Y 0.30 probably_damaging(0.999) TCGA-AA-3510-01 1 225607070 225607070 C A LBR Nonsense_Mutation p.E179* 0.34 TCGA-AA-3510-01 1 226054850 226054850 A G TMEM63A Silent p.Y176Y 0.11 TCGA-AA-3510-01 1 227222379 227222379 G T CDC42BPA Silent p.V1116V 0.37 TCGA-AA-3510-01 1 227441836 227441836 C T CDC42BPA Missense_Mutation p.V67M 0.39 deleterious(0) possibly_damaging(0.745) TCGA-AA-3510-01 1 227842637 227842637 G T ZNF678 Missense_Mutation p.R229I 0.44 tolerated(0.29) benign(0.006) TCGA-AA-3510-01 1 227843393 227843393 G T ZNF678 Missense_Mutation p.R481I 0.21 tolerated(0.25) benign(0.021) TCGA-AA-3510-01 1 228334601 228334601 C T GUK1 Silent p.I92I 0.37 TCGA-AA-3510-01 1 228434376 228434376 C T OBSCN Missense_Mutation p.S1394L 0.33 possibly_damaging(0.503) TCGA-AA-3510-01 1 228456447 228456447 C T OBSCN Missense_Mutation p.A1877V 0.41 probably_damaging(0.942) TCGA-AA-3510-01 1 228480450 228480450 C T OBSCN Silent p.C4039C 0.23 TCGA-AA-3510-01 1 228557761 228557761 G T OBSCN Missense_Mutation p.D7653Y 0.30 probably_damaging(0.998) TCGA-AA-3510-01 1 22902866 22902866 C T EPHA8 Missense_Mutation p.R106C 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 1 229596370 229596370 T G NUP133 Missense_Mutation p.Q944H 0.20 tolerated(0.18) benign(0.383) TCGA-AA-3510-01 1 230829156 230829156 C T COG2 3'UTR 0.29 TCGA-AA-3510-01 1 231064738 231064738 A C TTC13 Missense_Mutation p.L468V 0.43 tolerated(0.1) probably_damaging(0.997) TCGA-AA-3510-01 1 231472330 231472330 G A EXOC8 Nonsense_Mutation p.R388* 0.10 TCGA-AA-3510-01 1 231902965 231902965 G A DISC1 Missense_Mutation p.V450M 0.26 deleterious(0.04) benign(0.356) TCGA-AA-3510-01 1 232941436 232941436 G A MAP10 Missense_Mutation p.E223K 0.33 tolerated(0.07) benign(0.421) TCGA-AA-3510-01 1 232942501 232942501 G A MAP10 Missense_Mutation p.E578K 0.32 tolerated(0.09) probably_damaging(0.955) TCGA-AA-3510-01 1 232943875 232943875 G T MAP10 Nonsense_Mutation p.E1036* 0.08 TCGA-AA-3510-01 1 233105749 233105749 G A NTPCR Missense_Mutation p.R130H 0.33 deleterious(0.05) benign(0.052) TCGA-AA-3510-01 1 233121678 233121678 C T PCNXL2 Intron 0.26 TCGA-AA-3510-01 1 233482322 233482322 G A MLK4 Missense_Mutation p.E314K 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 23420265 23420265 C A LUZP1 Nonsense_Mutation p.E164* 0.37 TCGA-AA-3510-01 1 234445010 234445010 G A SLC35F3 Missense_Mutation p.A258T 0.07 deleterious(0) possibly_damaging(0.496) TCGA-AA-3510-01 1 235506710 235506710 C A GGPS1 3'UTR 0.39 TCGA-AA-3510-01 1 23697554 23697554 C A C1orf213 3'UTR 0.17 TCGA-AA-3510-01 1 237620023 237620023 T C RYR2 Missense_Mutation p.Y534H 0.47 possibly_damaging(0.86) TCGA-AA-3510-01 1 237824140 237824140 G T RYR2 Nonsense_Mutation p.E2777* 0.33 TCGA-AA-3510-01 1 237982366 237982366 C T RYR2 Missense_Mutation p.R4822C 0.27 probably_damaging(0.965) TCGA-AA-3510-01 1 240979714 240979714 G T RGS7 Missense_Mutation p.S229Y 0.07 deleterious(0) possibly_damaging(0.859) TCGA-AA-3510-01 1 24112859 24112859 C T PITHD1 Silent p.F160F 0.25 TCGA-AA-3510-01 1 241729809 241729809 A G KMO Missense_Mutation p.T236A 0.23 deleterious(0) probably_damaging(0.951) TCGA-AA-3510-01 1 241753371 241753371 C A KMO Missense_Mutation p.L386I 0.18 deleterious(0.04) possibly_damaging(0.831) TCGA-AA-3510-01 1 241767567 241767567 G A OPN3 Nonsense_Mutation p.R230* 0.40 TCGA-AA-3510-01 1 241823910 241823910 G A WDR64 Missense_Mutation p.R75H 0.28 deleterious(0.05) benign(0.047) TCGA-AA-3510-01 1 243303424 243303424 G A CEP170 Intron 0.34 TCGA-AA-3510-01 1 243800993 243800993 T C AKT3 Missense_Mutation p.K161E 0.46 deleterious(0) possibly_damaging(0.869) TCGA-AA-3510-01 1 244217659 244217659 C T ZBTB18 Nonsense_Mutation p.R195* 0.29 TCGA-AA-3510-01 1 244219621 244219621 T G ZBTB18 3'UTR 0.42 TCGA-AA-3510-01 1 244681964 244681964 G T C1orf101 Missense_Mutation p.R167I 0.24 deleterious(0.05) benign(0.087) TCGA-AA-3510-01 1 245017538 245017538 A G HNRNPU 3'UTR 0.35 TCGA-AA-3510-01 1 245017641 245017641 C T HNRNPU 3'UTR 0.27 TCGA-AA-3510-01 1 245017736 245017736 C T HNRNPU 3'UTR 0.25 TCGA-AA-3510-01 1 2450713 2450713 C T PANK4 Missense_Mutation p.D302N 0.25 tolerated(0.55) probably_damaging(0.956) TCGA-AA-3510-01 1 245250681 245250681 C T EFCAB2 3'UTR 0.40 TCGA-AA-3510-01 1 245865885 245865885 G A KIF26B Missense_Mutation p.D2102N 0.35 deleterious(0) unknown(0) TCGA-AA-3510-01 1 246887728 246887728 G A SCCPDH Missense_Mutation p.A2T 0.20 deleterious(0.04) benign(0.012) TCGA-AA-3510-01 1 246939739 246939739 G T RP11-439E19.10 3'Flank 0.44 TCGA-AA-3510-01 1 247695741 247695741 C A OR2C3 Nonsense_Mutation p.E25* 0.32 TCGA-AA-3510-01 1 247712498 247712498 G A GCSAML Missense_Mutation p.G2E 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3510-01 1 247752604 247752604 A C OR2G2 Missense_Mutation p.N315H 0.28 tolerated(0.08) unknown(0) TCGA-AA-3510-01 1 247978860 247978860 A G OR14A16 Missense_Mutation p.Y58H 0.26 deleterious(0.03) probably_damaging(0.996) TCGA-AA-3510-01 1 247978954 247978954 C T OR14A16 Silent p.S26S 0.22 TCGA-AA-3510-01 1 248263205 248263205 C A OR2L13 Missense_Mutation p.F176L 0.27 deleterious(0) possibly_damaging(0.619) TCGA-AA-3510-01 1 248458556 248458556 C T OR2T12 Missense_Mutation p.E109K 0.26 deleterious(0) probably_damaging(0.984) TCGA-AA-3510-01 1 248487415 248487415 G A OR2M7 Silent p.G152G 0.07 TCGA-AA-3510-01 1 248512344 248512344 A C OR14C36 Missense_Mutation p.I90L 0.28 deleterious(0) possibly_damaging(0.801) TCGA-AA-3510-01 1 248616225 248616225 A C OR2T2 Missense_Mutation p.N43H 0.16 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 1 248685216 248685216 A C OR2G6 Missense_Mutation p.K90T 0.32 deleterious(0) probably_damaging(0.95) TCGA-AA-3510-01 1 248813371 248813371 T G OR2T27 Missense_Mutation p.K272T 0.27 deleterious(0.05) possibly_damaging(0.461) TCGA-AA-3510-01 1 248813936 248813936 C T OR2T27 Missense_Mutation p.D84N 0.18 tolerated(0.37) benign(0.051) TCGA-AA-3510-01 1 248902887 248902887 C T LYPD8 3'UTR 0.32 TCGA-AA-3510-01 1 2525849 2525849 G T MMEL1 Missense_Mutation p.F574L 0.39 deleterious(0.01) probably_damaging(1) TCGA-AA-3510-01 1 25599046 25599046 C A RHD Missense_Mutation p.S3Y 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3510-01 1 25747270 25747270 G T RHCE Missense_Mutation p.S3Y 0.23 deleterious(0.01) probably_damaging(1) TCGA-AA-3510-01 1 26161381 26161381 C T AUNIP 3'UTR 0.41 TCGA-AA-3510-01 1 27023434 27023434 C T ARID1A Silent p.G180G 0.29 TCGA-AA-3510-01 1 28138768 28138768 C T STX12 Missense_Mutation p.R189W 0.41 deleterious(0) possibly_damaging(0.68) TCGA-AA-3510-01 1 28476387 28476387 C A PTAFR 3'UTR 0.56 TCGA-AA-3510-01 1 28864698 28864698 T A RCC1 3'Flank 0.50 TCGA-AA-3510-01 1 28920693 28920693 A C RAB42 3'UTR 0.26 TCGA-AA-3510-01 1 29447413 29447413 C A TMEM200B 3'UTR 0.30 TCGA-AA-3510-01 1 29581912 29581912 C T PTPRU Missense_Mutation p.P67S 0.26 deleterious(0.04) benign(0.012) TCGA-AA-3510-01 1 31426700 31426700 G A PUM1 Nonsense_Mutation p.R818* 0.27 TCGA-AA-3510-01 1 32206119 32206119 C T BAI2 Silent p.G606G 0.22 TCGA-AA-3510-01 1 32207538 32207538 G A BAI2 Missense_Mutation p.A483V 0.12 tolerated(0.45) benign(0.39) TCGA-AA-3510-01 1 33233412 33233412 A C KIAA1522 Missense_Mutation p.K87T 0.33 tolerated(0.08) unknown(0) TCGA-AA-3510-01 1 33354565 33354565 C A HPCA Missense_Mutation p.F22L 0.37 deleterious(0.01) probably_damaging(0.94) TCGA-AA-3510-01 1 33611544 33611544 A C TRIM62 3'UTR 0.23 TCGA-AA-3510-01 1 33841156 33841156 G A PHC2 5'UTR 0.40 TCGA-AA-3510-01 1 34011666 34011666 G A CSMD2 Missense_Mutation p.S2880L 0.16 tolerated(0.78) benign(0.022) TCGA-AA-3510-01 1 34015873 34015873 G A CSMD2 Missense_Mutation p.R2797W 0.20 tolerated(0.18) possibly_damaging(0.846) TCGA-AA-3510-01 1 35250423 35250423 C T GJB3 Silent p.F20F 0.51 TCGA-AA-3510-01 1 35333161 35333161 G T DLGAP3 Missense_Mutation p.F851L 0.40 deleterious(0) probably_damaging(0.982) TCGA-AA-3510-01 1 35654871 35654871 T G SFPQ Missense_Mutation p.K510Q 0.20 deleterious(0.03) possibly_damaging(0.874) TCGA-AA-3510-01 1 36381014 36381014 G A AGO1 Silent p.R633R 0.31 TCGA-AA-3510-01 1 3647558 3647558 C T TP73 Silent p.S471S 0.39 TCGA-AA-3510-01 1 36937167 36937167 G A CSF3R Silent p.I384I 0.43 TCGA-AA-3510-01 1 3697580 3697580 G A LRRC47 3'UTR 0.52 TCGA-AA-3510-01 1 3697899 3697899 T G LRRC47 Missense_Mutation p.K502T 0.38 deleterious(0) possibly_damaging(0.653) TCGA-AA-3510-01 1 3751584 3751584 C A CEP104 Nonsense_Mutation p.E464* 0.11 TCGA-AA-3510-01 1 38030733 38030733 A C DNALI1 3'UTR 0.42 TCGA-AA-3510-01 1 39797596 39797596 G T MACF1 Intron 0.38 TCGA-AA-3510-01 1 39801361 39801361 G A MACF1 Intron 0.31 TCGA-AA-3510-01 1 39877452 39877452 C T KIAA0754 Silent p.L369L 0.19 TCGA-AA-3510-01 1 39902155 39902155 T G MACF1 Missense_Mutation p.I3935S 0.34 benign(0.136) TCGA-AA-3510-01 1 39906723 39906723 C T MACF1 Missense_Mutation p.R4107W 0.12 probably_damaging(1) TCGA-AA-3510-01 1 40129099 40129099 G T NT5C1A Missense_Mutation p.F147L 0.41 tolerated(0.55) benign(0.009) TCGA-AA-3510-01 1 40137612 40137612 G T NT5C1A Missense_Mutation p.F33L 0.28 tolerated_low_confidence(0.83) benign(0.001) TCGA-AA-3510-01 1 40208918 40208918 C T PPIE Missense_Mutation p.R78C 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3510-01 1 40704283 40704283 G A RLF Silent p.L1303L 0.27 TCGA-AA-3510-01 1 40726524 40726524 A C ZMPSTE24 Missense_Mutation p.K46T 0.18 tolerated(0.09) benign(0.007) TCGA-AA-3510-01 1 40768433 40768433 G A COL9A2 Missense_Mutation p.A551V 0.35 tolerated(0.17) possibly_damaging(0.86) TCGA-AA-3510-01 1 40777743 40777743 G A COL9A2 Silent p.I135I 0.31 TCGA-AA-3510-01 1 40980888 40980888 C A EXO5 Silent p.I224I 0.24 TCGA-AA-3510-01 1 41461706 41461706 A G CTPS1 Missense_Mutation p.K280E 0.43 tolerated(0.5) benign(0.002) TCGA-AA-3510-01 1 42049344 42049344 G A HIVEP3 Silent p.I375I 0.27 TCGA-AA-3510-01 1 43119675 43119675 A G CCDC30 Silent p.E776E 0.26 TCGA-AA-3510-01 1 44595807 44595807 G T KLF17 Missense_Mutation p.E288D 0.32 tolerated(0.09) probably_damaging(0.939) TCGA-AA-3510-01 1 45271009 45271009 G A PLK3 Silent p.T569T 0.25 TCGA-AA-3510-01 1 45295381 45295381 C T PTCH2 Missense_Mutation p.E330K 0.31 deleterious(0) possibly_damaging(0.716) TCGA-AA-3510-01 1 45794188 45794188 G T HPDL 3'UTR 0.34 TCGA-AA-3510-01 1 46080726 46080726 A C NASP Missense_Mutation p.N570H 0.39 tolerated(0.1) benign(0.049) TCGA-AA-3510-01 1 46093845 46093845 A C GPBP1L1 3'UTR 0.35 TCGA-AA-3510-01 1 47403014 47403014 C T CYP4A11 Silent p.P114P 0.23 TCGA-AA-3510-01 1 47583615 47583615 C T CYP4Z1 3'UTR 0.32 TCGA-AA-3510-01 1 4832547 4832547 G A AJAP1 Silent p.S375S 0.30 TCGA-AA-3510-01 1 50610725 50610725 C T ELAVL4 Nonsense_Mutation p.Q53* 0.33 TCGA-AA-3510-01 1 52280406 52280406 A C NRD1 Missense_Mutation p.S575A 0.28 deleterious(0.01) possibly_damaging(0.542) TCGA-AA-3510-01 1 52870417 52870417 C A PRPF38A 5'UTR 0.37 TCGA-AA-3510-01 1 53237238 53237238 A C ZYG11B Missense_Mutation p.K248T 0.16 tolerated(0.07) benign(0.368) TCGA-AA-3510-01 1 53308562 53308562 C A ZYG11A Missense_Mutation p.H3N 0.28 deleterious_low_confidence(0.01) benign(0.382) TCGA-AA-3510-01 1 54291575 54291575 C A NDC1 Nonsense_Mutation p.E164* 0.41 TCGA-AA-3510-01 1 54301226 54301226 A G NDC1 Missense_Mutation p.V42A 0.39 tolerated(0.49) benign(0.005) TCGA-AA-3510-01 1 54423862 54423862 T G LRRC42 Missense_Mutation p.F172V 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 1 55586426 55586426 G A USP24 Missense_Mutation p.R1451C 0.48 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 1 5940215 5940215 C T NPHP4 Missense_Mutation p.R857H 0.30 tolerated(0.61) benign(0.005) TCGA-AA-3510-01 1 6202629 6202629 C T CHD5 Missense_Mutation p.D694N 0.34 tolerated(0.12) benign(0.014) TCGA-AA-3510-01 1 6209392 6209392 C T CHD5 Missense_Mutation p.D359N 0.22 deleterious(0) probably_damaging(0.99) TCGA-AA-3510-01 1 62673111 62673111 G T L1TD1 Missense_Mutation p.D271Y 0.09 deleterious(0.01) unknown(0) TCGA-AA-3510-01 1 62916320 62916320 G A USP1 Missense_Mutation p.A676T 0.49 tolerated(0.77) benign(0.001) TCGA-AA-3510-01 1 65352023 65352023 C T JAK1 Intron 0.37 TCGA-AA-3510-01 1 65831567 65831567 G T DNAJC6 Splice_Site p.X115_splice 0.08 TCGA-AA-3510-01 1 66062194 66062194 C A LEPR Missense_Mutation p.S256Y 0.31 tolerated(0.07) possibly_damaging(0.898) TCGA-AA-3510-01 1 6639597 6639597 T G TAS1R1 Missense_Mutation p.F827V 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 1 67091570 67091570 G T SGIP1 Missense_Mutation p.K17N 0.27 tolerated(0.05) probably_damaging(0.977) TCGA-AA-3510-01 1 67327928 67327928 G T WDR78 Missense_Mutation p.S333Y 0.25 deleterious(0.02) possibly_damaging(0.519) TCGA-AA-3510-01 1 70144128 70144128 C T LRRC7 Missense_Mutation p.R23C 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-AA-3510-01 1 70257786 70257786 C T LRRC7 Silent p.L84L 0.15 TCGA-AA-3510-01 1 70641596 70641596 G T LRRC40 Missense_Mutation p.L292I 0.16 tolerated(0.3) benign(0.216) TCGA-AA-3510-01 1 71512591 71512591 T A PTGER3 Missense_Mutation p.N224Y 0.33 deleterious(0.03) benign(0.435) TCGA-AA-3510-01 1 74649344 74649344 C T LRRIQ3 Missense_Mutation p.E9K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 1 74716374 74716374 G A FPGT-TNNI3K Missense_Mutation p.R199Q 0.22 tolerated(0.08) probably_damaging(0.994) TCGA-AA-3510-01 1 74957901 74957901 G A TNNI3K Missense_Mutation p.E869K 0.65 deleterious_low_confidence(0) possibly_damaging(0.551) TCGA-AA-3510-01 1 75038410 75038410 C A C1orf173 Missense_Mutation p.S995I 0.28 deleterious(0) probably_damaging(0.978) TCGA-AA-3510-01 1 76256972 76256972 G A RABGGTB Missense_Mutation p.E140K 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 76384681 76384681 G T ASB17 Missense_Mutation p.L282I 0.11 tolerated(0.09) possibly_damaging(0.874) TCGA-AA-3510-01 1 77632504 77632504 C A PIGK Missense_Mutation p.E129D 0.34 deleterious(0.01) benign(0.424) TCGA-AA-3510-01 1 77984314 77984314 C A AK5 Missense_Mutation p.L405I 0.30 tolerated(0.24) possibly_damaging(0.697) TCGA-AA-3510-01 1 78162853 78162853 C A USP33 3'UTR 0.18 TCGA-AA-3510-01 1 78392235 78392235 G T NEXN Missense_Mutation p.R209I 0.05 deleterious(0.04) benign(0.056) TCGA-AA-3510-01 1 78392441 78392441 C A NEXN Missense_Mutation p.S243Y 0.34 tolerated(0.1) benign(0.089) TCGA-AA-3510-01 1 79093977 79093977 G A IFI44L Missense_Mutation p.R126Q 0.48 tolerated(0.64) benign(0) TCGA-AA-3510-01 1 79116333 79116333 C T IFI44 Silent p.C151C 0.29 TCGA-AA-3510-01 1 79121166 79121166 C A IFI44 Silent p.I270I 0.11 TCGA-AA-3510-01 1 79126349 79126349 G T IFI44 Intron 0.09 TCGA-AA-3510-01 1 84815500 84815500 A G SAMD13 3'UTR 0.11 TCGA-AA-3510-01 1 84874084 84874084 G T DNASE2B Intron 0.28 TCGA-AA-3510-01 1 85647884 85647884 A C SYDE2 Missense_Mutation p.F814C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 85736325 85736325 T G BCL10 Missense_Mutation p.N108H 0.09 tolerated(0.06) possibly_damaging(0.726) TCGA-AA-3510-01 1 86203113 86203113 C T COL24A1 Missense_Mutation p.G1583D 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 86578284 86578284 C A COL24A1 Missense_Mutation p.G522V 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 1 86591224 86591224 C T COL24A1 Silent p.P265P 0.14 TCGA-AA-3510-01 1 87025638 87025638 G A CLCA4 Silent p.T61T 0.31 TCGA-AA-3510-01 1 87031680 87031680 C A CLCA4 Missense_Mutation p.L311I 0.25 deleterious(0.02) probably_damaging(0.951) TCGA-AA-3510-01 1 87185204 87185204 G T SH3GLB1 Nonsense_Mutation p.E77* 0.41 TCGA-AA-3510-01 1 87563787 87563787 G T HS2ST1 Intron 0.27 TCGA-AA-3510-01 1 87570373 87570373 G A HS2ST1 Silent p.S355S 0.34 TCGA-AA-3510-01 1 89318876 89318876 T G GTF2B 3'UTR 0.32 TCGA-AA-3510-01 1 89323128 89323128 C T GTF2B Missense_Mutation p.R193Q 0.31 tolerated(0.07) probably_damaging(0.941) TCGA-AA-3510-01 1 89735235 89735235 C T GBP5 Missense_Mutation p.A2T 0.35 tolerated(0.05) benign(0.259) TCGA-AA-3510-01 1 90048301 90048301 T A LRRC8B Missense_Mutation p.I31N 0.28 deleterious(0) possibly_damaging(0.452) TCGA-AA-3510-01 1 90401462 90401462 C A LRRC8D 3'UTR 0.34 TCGA-AA-3510-01 1 90478743 90478743 G T ZNF326 Missense_Mutation p.E291D 0.30 tolerated(0.22) possibly_damaging(0.899) TCGA-AA-3510-01 1 9079299 9079299 G T SLC2A7 Silent p.V135V 0.29 TCGA-AA-3510-01 1 9099955 9099955 G T SLC2A5 Silent p.I263I 0.35 TCGA-AA-3510-01 1 91382346 91382346 T G ZNF644 3'UTR 0.10 TCGA-AA-3510-01 1 91404025 91404025 C A ZNF644 Missense_Mutation p.K962N 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3510-01 1 91406089 91406089 T G ZNF644 Missense_Mutation p.E274D 0.28 tolerated(0.28) benign(0.002) TCGA-AA-3510-01 1 91726740 91726740 G T HFM1 3'UTR 0.17 TCGA-AA-3510-01 1 92470806 92470806 G T BRDT Missense_Mutation p.D909Y 0.08 deleterious(0) probably_damaging(0.969) TCGA-AA-3510-01 1 92554375 92554375 G A BTBD8 Silent p.Q90Q 0.32 TCGA-AA-3510-01 1 92632655 92632655 C A KIAA1107 5'UTR 0.34 TCGA-AA-3510-01 1 92646872 92646872 C A KIAA1107 Missense_Mutation p.S773Y 0.23 tolerated(0.18) possibly_damaging(0.871) TCGA-AA-3510-01 1 92712143 92712143 C A GLMN Nonsense_Mutation p.E577* 0.06 TCGA-AA-3510-01 1 93575840 93575840 G A MTF2 Missense_Mutation p.R20Q 0.36 tolerated(0.32) benign(0.011) TCGA-AA-3510-01 1 93621965 93621965 G T TMED5 Missense_Mutation p.F121L 0.37 deleterious(0) probably_damaging(0.99) TCGA-AA-3510-01 1 93965033 93965033 C T FNBP1L Silent p.F11F 0.21 TCGA-AA-3510-01 1 94467365 94467365 G T ABCA4 Intron 0.44 TCGA-AA-3510-01 1 94471008 94471008 C A ABCA4 Nonsense_Mutation p.E2046* 0.34 TCGA-AA-3510-01 1 94497594 94497594 C T ABCA4 Missense_Mutation p.A1290T 0.48 tolerated(1) benign(0.001) TCGA-AA-3510-01 1 94544218 94544218 G T ABCA4 Silent p.V428V 0.33 TCGA-AA-3510-01 1 97658725 97658725 T A DPYD Missense_Mutation p.K841I 0.25 deleterious(0.01) possibly_damaging(0.736) TCGA-AA-3510-01 1 97915627 97915627 G T DPYD Missense_Mutation p.D631E 0.25 tolerated(0.24) benign(0.002) TCGA-AA-3510-01 1 98015259 98015259 G T DPYD Missense_Mutation p.L461I 0.25 deleterious(0.02) benign(0.097) TCGA-AA-3510-01 1 98348921 98348921 C T DPYD Missense_Mutation p.A17T 0.35 tolerated(0.08) benign(0.02) TCGA-AA-3510-01 1 99771646 99771646 C T LPPR4 Nonsense_Mutation p.R458* 0.31 TCGA-AA-3510-01 20 10026268 10026268 C T ANKEF1 Missense_Mutation p.S248L 0.29 tolerated(0.05) benign(0.084) TCGA-AA-3510-01 20 10287011 10287011 C T SNAP25 3'UTR 0.25 TCGA-AA-3510-01 20 11904041 11904041 C T BTBD3 Silent p.G432G 0.34 TCGA-AA-3510-01 20 1223336 1223336 T G RAD21L1 Silent p.V310V 0.29 TCGA-AA-3510-01 20 123263 123263 C T DEFB126 5'UTR 0.25 TCGA-AA-3510-01 20 126299 126299 C T DEFB126 Missense_Mutation p.S101L 0.24 deleterious(0.03) unknown(0) TCGA-AA-3510-01 20 1532361 1532361 G A SIRPD Missense_Mutation p.R133W 0.31 deleterious(0) possibly_damaging(0.867) TCGA-AA-3510-01 20 15412068 15412068 A G MACROD2 Missense_Mutation p.T187A 0.37 deleterious(0) probably_damaging(0.989) TCGA-AA-3510-01 20 1546837 1546837 G A SIRPB1 Silent p.V387V 0.31 TCGA-AA-3510-01 20 15866411 15866411 G A MACROD2 Missense_Mutation p.D244N 0.32 deleterious(0.03) benign(0.06) TCGA-AA-3510-01 20 1961602 1961602 A C PDYN Missense_Mutation p.I44M 0.38 tolerated(0.06) benign(0.16) TCGA-AA-3510-01 20 19977393 19977393 G A RIN2 Silent p.A806A 0.23 TCGA-AA-3510-01 20 20020270 20020270 G A CRNKL1 Missense_Mutation p.R671C 0.23 tolerated(0.05) benign(0.014) TCGA-AA-3510-01 20 20168651 20168651 A C C20orf26 Missense_Mutation p.K488T 0.33 tolerated(0.1) benign(0.01) TCGA-AA-3510-01 20 20278871 20278871 G A C20orf26 Missense_Mutation p.R1088Q 0.09 deleterious(0.04) benign(0.333) TCGA-AA-3510-01 20 20351221 20351221 T G INSM1 3'UTR 0.33 TCGA-AA-3510-01 20 20351499 20351499 T C INSM1 3'UTR 0.33 TCGA-AA-3510-01 20 20610086 20610086 C T RALGAPA2 Missense_Mutation p.R385Q 0.33 tolerated(0.3) benign(0.055) TCGA-AA-3510-01 20 21321451 21321451 G A XRN2 Silent p.P457P 0.35 TCGA-AA-3510-01 20 22564918 22564918 G A FOXA2 5'UTR 0.45 TCGA-AA-3510-01 20 2308804 2308804 C T TGM3 Nonsense_Mutation p.R376* 0.12 TCGA-AA-3510-01 20 2638682 2638682 G A NOP56 Silent p.K509K 0.27 TCGA-AA-3510-01 20 2686298 2686298 C T EBF4 Silent p.F67F 0.22 TCGA-AA-3510-01 20 29960752 29960752 C A DEFB118 Missense_Mutation p.L51I 0.34 tolerated(0.07) benign(0.074) TCGA-AA-3510-01 20 30418839 30418839 A C MYLK2 Missense_Mutation p.K440T 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 20 30536621 30536621 C A PDRG1 Missense_Mutation p.M76I 0.35 tolerated(0.15) benign(0.268) TCGA-AA-3510-01 20 31024197 31024197 G T ASXL1 Nonsense_Mutation p.E1228* 0.38 TCGA-AA-3510-01 20 32856814 32856814 G T ASIP Missense_Mutation p.K80N 0.26 deleterious(0) benign(0.042) TCGA-AA-3510-01 20 33315155 33315155 C T NCOA6 Missense_Mutation p.R2019Q 0.22 possibly_damaging(0.703) TCGA-AA-3510-01 20 33330768 33330768 G A NCOA6 Missense_Mutation p.P1098S 0.31 benign(0.223) TCGA-AA-3510-01 20 34302155 34302155 C A RBM39 Missense_Mutation p.D350Y 0.32 deleterious(0) possibly_damaging(0.885) TCGA-AA-3510-01 20 34542925 34542925 A G SCAND1 5'UTR 0.34 TCGA-AA-3510-01 20 3556490 3556490 A G ATRN Silent p.R703R 0.12 TCGA-AA-3510-01 20 35627086 35627086 A C RBL1 3'UTR 0.33 TCGA-AA-3510-01 20 3641212 3641212 C A GFRA4 Nonsense_Mutation p.E230* 0.43 TCGA-AA-3510-01 20 3679966 3679966 C A SIGLEC1 Missense_Mutation p.G557C 0.42 deleterious(0.03) possibly_damaging(0.749) TCGA-AA-3510-01 20 36855607 36855607 G T KIAA1755 Missense_Mutation p.F667L 0.31 tolerated(1) benign(0.034) TCGA-AA-3510-01 20 36954702 36954702 C A BPI Silent p.I347I 0.29 TCGA-AA-3510-01 20 37356123 37356123 C T SLC32A1 Missense_Mutation p.A140V 0.25 deleterious(0) possibly_damaging(0.641) TCGA-AA-3510-01 20 37378662 37378662 G A ACTR5 Missense_Mutation p.D129N 0.38 tolerated(0.23) possibly_damaging(0.762) TCGA-AA-3510-01 20 37546833 37546833 G A PPP1R16B Missense_Mutation p.E410K 0.17 tolerated(0.47) benign(0.011) TCGA-AA-3510-01 20 39831596 39831596 C T ZHX3 Missense_Mutation p.R654Q 0.34 deleterious(0.05) probably_damaging(1) TCGA-AA-3510-01 20 40033233 40033233 C A CHD6 Nonstop_Mutation p.*2716Yext*12 0.32 TCGA-AA-3510-01 20 41385114 41385114 G A PTPRT Silent p.L283L 0.25 TCGA-AA-3510-01 20 42168894 42168894 G A L3MBTL1 Silent p.L737L 0.31 TCGA-AA-3510-01 20 43723695 43723695 C T KCNS1 Missense_Mutation p.R466H 0.32 deleterious(0.01) possibly_damaging(0.654) TCGA-AA-3510-01 20 43837099 43837099 A C SEMG1 Missense_Mutation p.Q387H 0.16 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 20 44671793 44671793 G T SLC12A5 Missense_Mutation p.E379D 0.29 tolerated(0.71) benign(0.005) TCGA-AA-3510-01 20 44680340 44680340 G T SLC12A5 Missense_Mutation p.E759D 0.15 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 20 45130119 45130119 C A ZNF334 Missense_Mutation p.R620I 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 20 45217830 45217830 G A SLC13A3 Missense_Mutation p.R329W 0.21 deleterious(0.05) possibly_damaging(0.773) TCGA-AA-3510-01 20 45224908 45224908 G A SLC13A3 Missense_Mutation p.R228W 0.40 deleterious(0.02) possibly_damaging(0.773) TCGA-AA-3510-01 20 45315685 45315685 C T TP53RK Missense_Mutation p.D157N 0.14 tolerated(0.28) possibly_damaging(0.773) TCGA-AA-3510-01 20 45725732 45725732 C T EYA2 Silent p.F271F 0.31 TCGA-AA-3510-01 20 45874917 45874917 T G ZMYND8 Missense_Mutation p.K707Q 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.462) TCGA-AA-3510-01 20 4764963 4764963 G A RASSF2 Nonsense_Mutation p.R313* 0.37 TCGA-AA-3510-01 20 47706078 47706078 T G CSE1L Missense_Mutation p.F659C 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3510-01 20 4776560 4776560 C T RASSF2 Missense_Mutation p.R63H 0.28 deleterious(0.05) benign(0.028) TCGA-AA-3510-01 20 48127668 48127668 C A PTGIS Missense_Mutation p.D419Y 0.14 deleterious(0.01) possibly_damaging(0.847) TCGA-AA-3510-01 20 48140645 48140645 A G PTGIS Missense_Mutation p.S269P 0.34 tolerated(0.48) benign(0.002) TCGA-AA-3510-01 20 50090652 50090652 C T NFATC2 Missense_Mutation p.D525N 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 20 50407889 50407889 G A SALL4 Missense_Mutation p.A378V 0.22 tolerated(0.42) benign(0.001) TCGA-AA-3510-01 20 52612543 52612543 G A BCAS1 Missense_Mutation p.A257V 0.11 tolerated(1) benign(0.001) TCGA-AA-3510-01 20 5295004 5295004 C A PROKR2 Missense_Mutation p.Q4H 0.29 tolerated_low_confidence(0.18) benign(0) TCGA-AA-3510-01 20 55048360 55048360 G A RTFDC1 Missense_Mutation p.D25N 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 20 55909114 55909114 C T SPO11 Missense_Mutation p.S158F 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 20 57036398 57036398 G T APCDD1L Missense_Mutation p.F318L 0.21 deleterious(0) possibly_damaging(0.58) TCGA-AA-3510-01 20 57829549 57829549 G T ZNF831 Missense_Mutation p.Q1595H 0.31 tolerated(0.16) benign(0.005) TCGA-AA-3510-01 20 58471574 58471574 G A SYCP2 Missense_Mutation p.P472S 0.38 tolerated(0.33) probably_damaging(0.999) TCGA-AA-3510-01 20 58476794 58476794 C A SYCP2 Nonsense_Mutation p.E369* 0.30 TCGA-AA-3510-01 20 58497501 58497501 G T SYCP2 5'UTR 0.35 TCGA-AA-3510-01 20 60705677 60705677 C T LSM14B Silent p.F255F 0.10 TCGA-AA-3510-01 20 61143967 61143967 C A C20orf166 5'Flank 0.28 TCGA-AA-3510-01 20 61523352 61523352 G A DIDO1 Missense_Mutation p.S1111F 0.29 probably_damaging(0.999) TCGA-AA-3510-01 20 61878933 61878933 G A NKAIN4 Silent p.I156I 0.28 TCGA-AA-3510-01 20 61929325 61929325 C T COL20A1 Missense_Mutation p.S49L 0.38 tolerated(0.14) benign(0.031) TCGA-AA-3510-01 20 61943790 61943790 G A COL20A1 Missense_Mutation p.A608T 0.17 tolerated(0.2) benign(0.045) TCGA-AA-3510-01 20 61951495 61951495 C T COL20A1 Silent p.F1007F 0.30 TCGA-AA-3510-01 20 62127233 62127233 C A EEF1A2 Missense_Mutation p.K100N 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3510-01 20 62174697 62174697 C A SRMS Missense_Mutation p.Q205H 0.45 tolerated(0.13) benign(0.016) TCGA-AA-3510-01 20 62701931 62701931 G A TCEA2 Silent p.T254T 0.24 TCGA-AA-3510-01 20 62850284 62850284 G A MYT1 Missense_Mutation p.A623T 0.43 benign(0.376) TCGA-AA-3510-01 20 855045 855045 G A ANGPT4 Silent p.V411V 0.17 TCGA-AA-3510-01 20 8769286 8769286 G T PLCB1 Missense_Mutation p.K1065N 0.28 deleterious(0.05) benign(0.219) TCGA-AA-3510-01 20 9404516 9404516 G A PLCB4 Missense_Mutation p.R802Q 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 21 10863056 10863056 G T IGHV1OR21-1 Missense_Mutation p.D118Y 0.12 tolerated(0.12) benign(0.19) TCGA-AA-3510-01 21 10906866 10906866 A C TPTE 3'UTR 0.10 TCGA-AA-3510-01 21 10906875 10906875 C A TPTE 3'UTR 0.10 TCGA-AA-3510-01 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.06 deleterious(0.03) possibly_damaging(0.883) TCGA-AA-3510-01 21 15745951 15745951 G T HSPA13 Missense_Mutation p.T468N 0.32 tolerated_low_confidence(0.08) benign(0.212) TCGA-AA-3510-01 21 22910311 22910311 G A NCAM2 3'UTR 0.34 TCGA-AA-3510-01 21 27840931 27840931 G A CYYR1 Silent p.H118H 0.26 TCGA-AA-3510-01 21 28210259 28210259 G T ADAMTS1 Missense_Mutation p.S848Y 0.34 tolerated(0.06) probably_damaging(0.928) TCGA-AA-3510-01 21 30380095 30380095 C A RWDD2B Nonsense_Mutation p.E238* 0.40 TCGA-AA-3510-01 21 30547234 30547234 G A MAP3K7CL 3'UTR 0.43 TCGA-AA-3510-01 21 31661731 31661731 C T KRTAP25-1 Silent p.P26P 0.27 TCGA-AA-3510-01 21 31720805 31720805 T C KRTAP23-1 Silent p.E40E 0.36 TCGA-AA-3510-01 21 31769009 31769009 G T KRTAP13-1 3'UTR 0.33 TCGA-AA-3510-01 21 33043723 33043723 C T SCAF4 Missense_Mutation p.A1145T 0.18 unknown(0) TCGA-AA-3510-01 21 33063107 33063107 T C SCAF4 Intron 0.33 TCGA-AA-3510-01 21 33077745 33077745 G T SCAF4 Missense_Mutation p.F50L 0.34 probably_damaging(0.952) TCGA-AA-3510-01 21 33719911 33719911 C T URB1 Silent p.R1074R 0.30 TCGA-AA-3510-01 21 34635174 34635174 A C IFNAR2 Missense_Mutation p.Y306S 0.19 tolerated(0.44) benign(0.002) TCGA-AA-3510-01 21 34799255 34799255 C A IFNGR2 Missense_Mutation p.F159L 0.38 tolerated(0.24) benign(0.078) TCGA-AA-3510-01 21 34860556 34860556 A C DNAJC28 Missense_Mutation p.F382C 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.706) TCGA-AA-3510-01 21 35471122 35471122 C T SLC5A3 3'UTR 0.30 TCGA-AA-3510-01 21 35472289 35472289 G A SLC5A3 3'UTR 0.34 TCGA-AA-3510-01 21 36080249 36080249 G A CLIC6 Missense_Mutation p.A498T 0.34 deleterious(0.03) benign(0.023) TCGA-AA-3510-01 21 36088692 36088692 C T CLIC6 Missense_Mutation p.A658V 0.16 deleterious(0.01) probably_damaging(0.948) TCGA-AA-3510-01 21 37408450 37408450 C T SETD4 Missense_Mutation p.E430K 0.16 tolerated(0.09) benign(0.003) TCGA-AA-3510-01 21 37431223 37431223 C A SETD4 5'UTR 0.33 TCGA-AA-3510-01 21 37626108 37626108 C T DOPEY2 Silent p.V1720V 0.39 TCGA-AA-3510-01 21 38302646 38302646 C T HLCS Missense_Mutation p.E362K 0.21 deleterious(0.02) benign(0.437) TCGA-AA-3510-01 21 38536485 38536485 G T TTC3 Missense_Mutation p.M1101I 0.19 tolerated(0.47) benign(0) TCGA-AA-3510-01 21 38997347 38997347 A C KCNJ6 3'UTR 0.35 TCGA-AA-3510-01 21 39673086 39673086 T C KCNJ15 3'UTR 0.29 TCGA-AA-3510-01 21 39764302 39764302 C T ERG Silent p.S277S 0.44 TCGA-AA-3510-01 21 39764353 39764353 C T ERG Silent p.E260E 0.36 TCGA-AA-3510-01 21 40553757 40553757 G T PSMG1 Missense_Mutation p.S61Y 0.35 deleterious(0.02) benign(0.182) TCGA-AA-3510-01 21 40578101 40578101 G A BRWD1 Nonsense_Mutation p.R1433* 0.38 TCGA-AA-3510-01 21 41137616 41137616 G A IGSF5 Silent p.E85E 0.44 TCGA-AA-3510-01 21 41741083 41741083 G A DSCAM Missense_Mutation p.R200W 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-AA-3510-01 21 43243719 43243719 G T PRDM15 Missense_Mutation p.F938L 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 21 43327141 43327141 C T C2CD2 Silent p.K426K 0.38 TCGA-AA-3510-01 21 43704778 43704778 C T ABCG1 Silent p.F281F 0.27 TCGA-AA-3510-01 21 43708058 43708058 C A ABCG1 Silent p.R345R 0.55 TCGA-AA-3510-01 21 43767608 43767608 C T TFF2 Silent p.P121P 0.38 TCGA-AA-3510-01 21 45152394 45152394 G A PDXK Intron 0.26 TCGA-AA-3510-01 21 45773582 45773582 G T TRPM2 5'UTR 0.23 TCGA-AA-3510-01 21 46276249 46276249 G A PTTG1IP Missense_Mutation p.S103L 0.30 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 21 46386954 46386954 G A FAM207A Missense_Mutation p.E120K 0.34 deleterious(0.01) probably_damaging(0.961) TCGA-AA-3510-01 21 46491872 46491872 A C ADARB1 5'Flank 0.33 TCGA-AA-3510-01 21 46716382 46716382 C A LINC00205 RNA 0.21 TCGA-AA-3510-01 21 46925161 46925161 G A COL18A1 Silent p.G1174G 0.31 TCGA-AA-3510-01 21 47536302 47536302 C A COL6A2 Silent p.G304G 0.33 TCGA-AA-3510-01 21 47692533 47692533 C T MCM3AP Missense_Mutation p.E803K 0.42 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 22 16256656 16256656 C A POTEH 3'UTR 0.08 TCGA-AA-3510-01 22 17662716 17662716 G T CECR1 Missense_Mutation p.S479Y 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 22 18072368 18072368 G A SLC25A18 Missense_Mutation p.R248Q 0.32 deleterious(0) possibly_damaging(0.804) TCGA-AA-3510-01 22 18845975 18845975 C T BCRP7 Intron 0.13 TCGA-AA-3510-01 22 18910408 18910408 G T PRODH Missense_Mutation p.F257L 0.08 tolerated(0.12) benign(0.017) TCGA-AA-3510-01 22 19707914 19707914 G A SEPT5 Missense_Mutation p.R145Q 0.36 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 22 19710125 19710125 C A SEPT5 3'UTR 0.38 TCGA-AA-3510-01 22 20114625 20114625 A C RANBP1 3'UTR 0.11 TCGA-AA-3510-01 22 21363537 21363537 G A AC002472.1 5'Flank 0.31 TCGA-AA-3510-01 22 21414711 21414711 G T AC002472.13 Missense_Mutation p.G357V 0.30 tolerated(0.65) benign(0) TCGA-AA-3510-01 22 22007328 22007328 T C MIR301B RNA 0.31 TCGA-AA-3510-01 22 22453564 22453564 G A IGLV8-61 Missense_Mutation p.A104T 0.22 tolerated(0.15) possibly_damaging(0.455) TCGA-AA-3510-01 22 22682067 22682067 C A IGLV1-50 Missense_Mutation p.F83L 0.22 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-AA-3510-01 22 22868700 22868700 T G ZNF280A Missense_Mutation p.N419H 0.26 deleterious(0.01) possibly_damaging(0.686) TCGA-AA-3510-01 22 22869900 22869900 C A ZNF280A Nonsense_Mutation p.E19* 0.22 TCGA-AA-3510-01 22 22931042 22931042 C T IGLV2-33 Silent p.I79I 0.42 TCGA-AA-3510-01 22 23040759 23040759 T G IGLV2-23 Missense_Mutation p.I69M 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.613) TCGA-AA-3510-01 22 23101553 23101553 T G IGLV2-14 Missense_Mutation p.I69M 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-AA-3510-01 22 23406098 23406098 C T RTDR1 Missense_Mutation p.R212H 0.25 tolerated(0.12) benign(0.036) TCGA-AA-3510-01 22 24917987 24917987 G A UPB1 Missense_Mutation p.G303R 0.24 deleterious(0) possibly_damaging(0.867) TCGA-AA-3510-01 22 25144900 25144900 C T PIWIL3 Missense_Mutation p.A475T 0.32 deleterious(0.05) benign(0.011) TCGA-AA-3510-01 22 30184792 30184792 C A ASCC2 3'UTR 0.20 TCGA-AA-3510-01 22 30412561 30412561 C T MTMR3 Silent p.F516F 0.32 TCGA-AA-3510-01 22 30734847 30734847 C T SF3A1 Silent p.P558P 0.09 TCGA-AA-3510-01 22 31335684 31335684 G A MORC2 Nonsense_Mutation p.R271* 0.32 TCGA-AA-3510-01 22 31662980 31662980 A C LIMK2 Missense_Mutation p.K330T 0.33 deleterious(0) probably_damaging(0.926) TCGA-AA-3510-01 22 31822711 31822711 G A DRG1 Missense_Mutation p.R275H 0.35 tolerated(0.12) benign(0.001) TCGA-AA-3510-01 22 31859851 31859851 C T EIF4ENIF1 Missense_Mutation p.R134Q 0.25 deleterious(0.04) probably_damaging(0.956) TCGA-AA-3510-01 22 32010834 32010834 C T SFI1 Missense_Mutation p.A1019V 0.17 tolerated(0.5) benign(0.002) TCGA-AA-3510-01 22 32330308 32330308 C T C22orf24 Silent p.K93K 0.28 TCGA-AA-3510-01 22 32644734 32644734 G A SLC5A4 Missense_Mutation p.S123L 0.38 deleterious(0.01) benign(0.105) TCGA-AA-3510-01 22 32756141 32756141 G T RFPL3S 3'UTR 0.38 TCGA-AA-3510-01 22 32883767 32883767 A C FBXO7 Missense_Mutation p.K275Q 0.06 tolerated(0.12) possibly_damaging(0.694) TCGA-AA-3510-01 22 36055545 36055545 G A APOL6 Missense_Mutation p.E312K 0.31 tolerated(0.18) benign(0.003) TCGA-AA-3510-01 22 36122760 36122760 C T APOL5 Silent p.F215F 0.15 TCGA-AA-3510-01 22 36541638 36541638 C T APOL3 Missense_Mutation p.R78H 0.25 tolerated(0.12) possibly_damaging(0.662) TCGA-AA-3510-01 22 36595649 36595649 C T APOL4 Intron 0.35 TCGA-AA-3510-01 22 36960240 36960240 G T CACNG2 3'UTR 0.36 TCGA-AA-3510-01 22 36960869 36960869 G A CACNG2 Silent p.S167S 0.14 TCGA-AA-3510-01 22 37397962 37397962 C T TEX33 Silent p.T135T 0.26 TCGA-AA-3510-01 22 38087219 38087219 G A NOL12 Missense_Mutation p.R173H 0.27 tolerated(0.11) benign(0.004) TCGA-AA-3510-01 22 38352844 38352844 G A POLR2F Missense_Mutation p.E29K 0.27 tolerated(0.26) unknown(0) TCGA-AA-3510-01 22 38379437 38379437 G A SOX10 Missense_Mutation p.R119C 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 22 38611370 38611370 G A MAFF 3'UTR 0.35 TCGA-AA-3510-01 22 38894090 38894090 G A DDX17 Silent p.I246I 0.17 TCGA-AA-3510-01 22 38962607 38962607 C T DMC1 Silent p.A77A 0.32 TCGA-AA-3510-01 22 39016284 39016284 G T FAM227A Missense_Mutation p.S319Y 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-AA-3510-01 22 39085123 39085123 A G JOSD1 Missense_Mutation p.V109A 0.21 tolerated(0.77) benign(0.001) TCGA-AA-3510-01 22 39483015 39483015 G T APOBEC3G Splice_Site p.X342_splice 0.09 TCGA-AA-3510-01 22 39483593 39483593 G T APOBEC3G 3'UTR 0.38 TCGA-AA-3510-01 22 39777880 39777880 C T SYNGR1 Silent p.F221F 0.39 TCGA-AA-3510-01 22 40662217 40662217 G T TNRC6B Missense_Mutation p.K661N 0.38 tolerated(0.07) probably_damaging(0.997) TCGA-AA-3510-01 22 40704578 40704578 C T TNRC6B Missense_Mutation p.R1395C 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 22 40762537 40762537 G T ADSL 3'UTR 0.30 TCGA-AA-3510-01 22 41173244 41173244 C A SLC25A17 Missense_Mutation p.K195N 0.13 tolerated(0.33) benign(0.34) TCGA-AA-3510-01 22 41277816 41277816 G A XPNPEP3 Missense_Mutation p.R75H 0.44 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 22 42099342 42099342 G A MEI1 Missense_Mutation p.R61H 0.24 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 22 42221704 42221704 C A CCDC134 Missense_Mutation p.F189L 0.46 tolerated(0.42) benign(0.004) TCGA-AA-3510-01 22 42952434 42952434 C T SERHL2 Intron 0.34 TCGA-AA-3510-01 22 43634703 43634703 G A SCUBE1 Intron 0.27 TCGA-AA-3510-01 22 44074010 44074010 G A EFCAB6 Nonsense_Mutation p.R429* 0.27 TCGA-AA-3510-01 22 44280218 44280218 C A PNPLA5 Missense_Mutation p.K319N 0.23 deleterious(0.03) possibly_damaging(0.575) TCGA-AA-3510-01 22 45748340 45748340 G A SMC1B Missense_Mutation p.A1139V 0.43 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 22 45789572 45789572 C T SMC1B Missense_Mutation p.R496H 0.37 deleterious(0) probably_damaging(0.968) TCGA-AA-3510-01 22 45798342 45798342 A C SMC1B Nonsense_Mutation p.L242* 0.15 TCGA-AA-3510-01 22 47287249 47287249 G A TBC1D22A Missense_Mutation p.D266N 0.30 deleterious(0.04) benign(0.045) TCGA-AA-3510-01 22 50656714 50656714 A G TUBGCP6 Missense_Mutation p.V1691A 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 22 50903522 50903522 C T SBF1 Missense_Mutation p.D414N 0.29 deleterious(0) probably_damaging(0.944) TCGA-AA-3510-01 22 50946826 50946826 G T NCAPH2 Missense_Mutation p.K20N 0.37 deleterious(0) probably_damaging(0.976) TCGA-AA-3510-01 22 50989558 50989558 T G SYCE3 3'UTR 0.34 TCGA-AA-3510-01 2 100182039 100182039 G T AFF3 Nonsense_Mutation p.S1035* 0.30 TCGA-AA-3510-01 2 100900750 100900750 G T LONRF2 3'UTR 0.28 TCGA-AA-3510-01 2 100911960 100911960 C T LONRF2 Missense_Mutation p.R511Q 0.32 tolerated(0.08) benign(0.007) TCGA-AA-3510-01 2 101031528 101031528 C T CHST10 5'UTR 0.36 TCGA-AA-3510-01 2 102968431 102968431 C T IL1RL1 3'UTR 0.32 TCGA-AA-3510-01 2 102988516 102988516 T G IL18R1 Missense_Mutation p.F136V 0.14 tolerated(0.09) benign(0.021) TCGA-AA-3510-01 2 106497917 106497917 C T NCK2 Silent p.F120F 0.31 TCGA-AA-3510-01 2 106782530 106782530 C T UXS1 Missense_Mutation p.G35D 0.09 tolerated_low_confidence(0.17) benign(0.007) TCGA-AA-3510-01 2 107002828 107002828 G T PLGLA RNA 0.33 TCGA-AA-3510-01 2 107460046 107460046 C A ST6GAL2 Missense_Mutation p.D130Y 0.09 possibly_damaging(0.759) TCGA-AA-3510-01 2 10811776 10811776 G A NOL10 Missense_Mutation p.S123L 0.33 deleterious(0.01) benign(0.006) TCGA-AA-3510-01 2 108488304 108488304 C A RGPD4 Missense_Mutation p.L1282I 0.14 tolerated(0.14) possibly_damaging(0.593) TCGA-AA-3510-01 2 108488572 108488572 T C RGPD4 Missense_Mutation p.V1371A 0.07 tolerated(0.52) benign(0.006) TCGA-AA-3510-01 2 109363174 109363174 G T RANBP2 Missense_Mutation p.R328I 0.07 deleterious(0) benign(0.003) TCGA-AA-3510-01 2 109399172 109399172 G A RANBP2 Missense_Mutation p.E3075K 0.15 deleterious(0.03) probably_damaging(0.973) TCGA-AA-3510-01 2 109429319 109429319 C A CCDC138 Missense_Mutation p.S326Y 0.10 tolerated(0.92) benign(0.065) TCGA-AA-3510-01 2 110374299 110374299 A G SOWAHC 3'UTR 0.28 TCGA-AA-3510-01 2 112638397 112638397 C T ANAPC1 Silent p.S2S 0.36 TCGA-AA-3510-01 2 113251868 113251868 G T TTL Nonsense_Mutation p.E129* 0.29 TCGA-AA-3510-01 2 113780121 113780121 T C IL36B 3'UTR 0.45 TCGA-AA-3510-01 2 114257679 114257679 G T FOXD4L1 Missense_Mutation p.K282N 0.25 deleterious(0.02) benign(0.045) TCGA-AA-3510-01 2 114258633 114258633 C A FOXD4L1 3'UTR 0.26 TCGA-AA-3510-01 2 114335761 114335761 C A FAM138B Intron 0.24 TCGA-AA-3510-01 2 114340629 114340629 G A MIR1302-3 RNA 0.06 TCGA-AA-3510-01 2 114513604 114513604 C A SLC35F5 Intron 0.55 TCGA-AA-3510-01 2 121748026 121748026 C T GLI2 Silent p.F1512F 0.40 TCGA-AA-3510-01 2 125504942 125504942 C T CNTNAP5 Silent p.C737C 0.19 TCGA-AA-3510-01 2 128366375 128366375 G A MYO7B Silent p.T912T 0.32 TCGA-AA-3510-01 2 128461970 128461970 A C WDR33 3'UTR 0.26 TCGA-AA-3510-01 2 12880833 12880833 G A TRIB2 Silent p.S315S 0.24 TCGA-AA-3510-01 2 128937420 128937420 G T UGGT1 Missense_Mutation p.K1292N 0.23 deleterious(0.02) probably_damaging(1) TCGA-AA-3510-01 2 131521484 131521484 C A AMER3 Missense_Mutation p.F613L 0.22 tolerated(0.61) benign(0.006) TCGA-AA-3510-01 2 131525245 131525245 G T AMER3 3'UTR 0.35 TCGA-AA-3510-01 2 131796435 131796435 G A ARHGEF4 Missense_Mutation p.D193N 0.15 tolerated(0.09) probably_damaging(0.915) TCGA-AA-3510-01 2 132258952 132258952 G A AC093838.4 RNA 0.38 TCGA-AA-3510-01 2 133402620 133402620 C A LYPD1 3'UTR 0.38 TCGA-AA-3510-01 2 135781100 135781100 T G MAP3K19 Intron 0.32 TCGA-AA-3510-01 2 135872863 135872863 G A RAB3GAP1 Missense_Mutation p.R187Q 0.32 tolerated(0.1) benign(0.327) TCGA-AA-3510-01 2 135965174 135965174 G A ZRANB3 Nonsense_Mutation p.R947* 0.24 TCGA-AA-3510-01 2 136513168 136513168 G T UBXN4 Nonsense_Mutation p.E139* 0.37 TCGA-AA-3510-01 2 136528144 136528144 G T UBXN4 Nonsense_Mutation p.E221* 0.31 TCGA-AA-3510-01 2 136540483 136540483 A C UBXN4 3'UTR 0.30 TCGA-AA-3510-01 2 137928347 137928347 C A THSD7B Missense_Mutation p.S521Y 0.41 deleterious(0) possibly_damaging(0.781) TCGA-AA-3510-01 2 139428701 139428701 G A NXPH2 Missense_Mutation p.R196W 0.37 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 2 141283540 141283540 G T LRP1B Missense_Mutation p.F2633L 0.29 benign(0.153) TCGA-AA-3510-01 2 141816481 141816481 C T LRP1B Missense_Mutation p.R460Q 0.32 benign(0.238) TCGA-AA-3510-01 2 144903272 144903272 C T GTDC1 Missense_Mutation p.E72K 0.10 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 2 145157675 145157675 G T ZEB2 Missense_Mutation p.S360Y 0.30 deleterious(0) probably_damaging(0.971) TCGA-AA-3510-01 2 148684734 148684734 G T ACVR2A Missense_Mutation p.R478I 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 2 149270532 149270532 G A MBD5 3'UTR 0.18 TCGA-AA-3510-01 2 1500369 1500369 G A TPO Missense_Mutation p.D740N 0.40 tolerated(0.1) possibly_damaging(0.533) TCGA-AA-3510-01 2 150426583 150426583 G A MMADHC Missense_Mutation p.R266C 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3510-01 2 1520694 1520694 C T TPO Missense_Mutation p.S853L 0.33 tolerated(0.15) benign(0.008) TCGA-AA-3510-01 2 152317694 152317694 C A RIF1 Missense_Mutation p.L1040I 0.40 tolerated(0.15) benign(0.046) TCGA-AA-3510-01 2 152320462 152320462 G T RIF1 Missense_Mutation p.E1476D 0.40 tolerated(0.16) benign(0.032) TCGA-AA-3510-01 2 15416997 15416997 C A NBAS Missense_Mutation p.K1789N 0.31 tolerated(0.08) possibly_damaging(0.662) TCGA-AA-3510-01 2 154996943 154996943 A C GALNT13 Missense_Mutation p.K79T 0.40 tolerated(0.18) benign(0.15) TCGA-AA-3510-01 2 155566202 155566202 C A KCNJ3 Missense_Mutation p.L264I 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3510-01 2 15698717 15698717 C T NBAS Silent p.T53T 0.20 TCGA-AA-3510-01 2 157186681 157186681 C T NR4A2 Silent p.A6A 0.31 TCGA-AA-3510-01 2 15771040 15771040 T G DDX1 3'UTR 0.39 TCGA-AA-3510-01 2 158958584 158958584 A T UPP2 Silent p.S60S 0.27 TCGA-AA-3510-01 2 160287666 160287666 T G BAZ2B Missense_Mutation p.E634D 0.21 benign(0.217) TCGA-AA-3510-01 2 160585571 160585571 C A MARCH7 Missense_Mutation p.S13Y 0.26 deleterious(0) possibly_damaging(0.864) TCGA-AA-3510-01 2 162267813 162267813 G A PSMD14 Missense_Mutation p.D279N 0.31 tolerated(0.15) possibly_damaging(0.651) TCGA-AA-3510-01 2 162903493 162903493 C A DPP4 Nonsense_Mutation p.E73* 0.09 TCGA-AA-3510-01 2 163046209 163046209 C A FAP Missense_Mutation p.Q502H 0.31 deleterious(0.05) benign(0.001) TCGA-AA-3510-01 2 163253256 163253256 G A KCNH7 Silent p.S869S 0.16 TCGA-AA-3510-01 2 163374567 163374567 T G KCNH7 Missense_Mutation p.K189Q 0.25 tolerated(0.44) benign(0.016) TCGA-AA-3510-01 2 1652732 1652732 G A PXDN Silent p.I940I 0.17 TCGA-AA-3510-01 2 165809228 165809228 G T SLC38A11 Nonsense_Mutation p.S17* 0.39 TCGA-AA-3510-01 2 165952024 165952024 C A SCN3A Missense_Mutation p.K1476N 0.29 deleterious(0) benign(0.197) TCGA-AA-3510-01 2 165986561 165986561 G A SCN3A Silent p.F937F 0.28 TCGA-AA-3510-01 2 166003319 166003319 C A SCN3A Missense_Mutation p.R534I 0.32 deleterious(0) probably_damaging(0.921) TCGA-AA-3510-01 2 166011168 166011168 T C SCN3A Missense_Mutation p.T392A 0.26 deleterious(0.03) probably_damaging(0.969) TCGA-AA-3510-01 2 166020346 166020346 G T SCN3A Intron 0.34 TCGA-AA-3510-01 2 166237169 166237169 T G SCN2A Missense_Mutation p.F1459C 0.33 deleterious(0) probably_damaging(0.967) TCGA-AA-3510-01 2 166859105 166859105 G A SCN1A Silent p.I1387I 0.41 TCGA-AA-3510-01 2 167134746 167134746 G A SCN9A Silent p.G796G 0.29 TCGA-AA-3510-01 2 167151090 167151090 G T SCN9A Intron 0.37 TCGA-AA-3510-01 2 167262953 167262953 C T SCN7A Missense_Mutation p.V1396I 0.32 tolerated(1) benign(0) TCGA-AA-3510-01 2 167273351 167273351 C T SCN7A Missense_Mutation p.E1094K 0.17 tolerated(0.16) benign(0.032) TCGA-AA-3510-01 2 167301349 167301349 A C SCN7A Missense_Mutation p.L517V 0.15 tolerated(0.15) possibly_damaging(0.556) TCGA-AA-3510-01 2 167327163 167327163 C A SCN7A Missense_Mutation p.R209I 0.11 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 2 16743285 16743285 G A FAM49A Silent p.F141F 0.23 TCGA-AA-3510-01 2 168104191 168104191 G T XIRP2 Nonsense_Mutation p.E2097* 0.35 TCGA-AA-3510-01 2 168104486 168104486 C A XIRP2 Missense_Mutation p.S2195Y 0.17 benign(0.126) TCGA-AA-3510-01 2 168105423 168105423 T G XIRP2 Silent p.T2507T 0.35 TCGA-AA-3510-01 2 168107951 168107951 C A XIRP2 Nonsense_Mutation p.S3350* 0.12 TCGA-AA-3510-01 2 168115266 168115266 C T XIRP2 3'UTR 0.32 TCGA-AA-3510-01 2 169020379 169020379 C T STK39 Missense_Mutation p.D148N 0.30 deleterious(0.02) possibly_damaging(0.881) TCGA-AA-3510-01 2 169842719 169842719 G A ABCB11 Silent p.F328F 0.33 TCGA-AA-3510-01 2 169851889 169851889 G T ABCB11 Nonsense_Mutation p.S194* 0.32 TCGA-AA-3510-01 2 169874617 169874617 G T ABCB11 Missense_Mutation p.L7I 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3510-01 2 170025143 170025143 G A LRP2 Silent p.F3847F 0.31 TCGA-AA-3510-01 2 170101208 170101208 T C LRP2 Missense_Mutation p.N1142S 0.15 benign(0.057) TCGA-AA-3510-01 2 170806158 170806158 G T UBR3 Missense_Mutation p.R1043I 0.13 tolerated(0.1) probably_damaging(0.991) TCGA-AA-3510-01 2 171850426 171850426 C T TLK1 Missense_Mutation p.R722Q 0.12 deleterious(0) probably_damaging(0.964) TCGA-AA-3510-01 2 171863327 171863327 G T TLK1 Missense_Mutation p.F527L 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-AA-3510-01 2 172411458 172411458 G T CYBRD1 3'UTR 0.45 TCGA-AA-3510-01 2 172782145 172782145 A C HAT1 Missense_Mutation p.K36Q 0.31 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 2 172821956 172821956 T C HAT1 Missense_Mutation p.F136S 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 2 172926305 172926305 C A METAP1D Missense_Mutation p.F40L 0.36 tolerated(0.27) benign(0.001) TCGA-AA-3510-01 2 174940079 174940079 T C OLA1 3'UTR 0.30 TCGA-AA-3510-01 2 175618130 175618130 G A CHRNA1 Intron 0.27 TCGA-AA-3510-01 2 175742819 175742819 C T CHN1 Missense_Mutation p.D100N 0.29 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 2 176948621 176948621 C T EVX2 5'UTR 0.17 TCGA-AA-3510-01 2 176981552 176981552 C T HOXD10 5'UTR 0.31 TCGA-AA-3510-01 2 176996243 176996243 A G HOXD8 Missense_Mutation p.D259G 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 2 177036741 177036741 C T HOXD3 Silent p.F346F 0.36 TCGA-AA-3510-01 2 179423276 179423276 G A TTN Silent p.G28970G 0.36 TCGA-AA-3510-01 2 179429707 179429707 T C TTN Missense_Mutation p.N27051S 0.38 TCGA-AA-3510-01 2 179432198 179432198 G A TTN Missense_Mutation p.P26221S 0.32 TCGA-AA-3510-01 2 179435944 179435944 C A TTN Missense_Mutation p.G24972V 0.32 TCGA-AA-3510-01 2 179468997 179468997 G A TTN Silent p.F18139F 0.24 TCGA-AA-3510-01 2 179476359 179476359 C T TTN Missense_Mutation p.R16866K 0.24 TCGA-AA-3510-01 2 179516248 179516248 T C TTN Missense_Mutation p.K13160R 0.21 TCGA-AA-3510-01 2 179543503 179543503 G T TTN Missense_Mutation p.P11266H 0.07 TCGA-AA-3510-01 2 179549099 179549099 G T TTN Missense_Mutation p.L10894I 0.39 TCGA-AA-3510-01 2 179577571 179577571 G T TTN Missense_Mutation p.P9061T 0.40 TCGA-AA-3510-01 2 179581915 179581915 G A TTN Missense_Mutation p.L8516F 0.41 TCGA-AA-3510-01 2 179582406 179582406 G T TTN Missense_Mutation p.L8399I 0.34 TCGA-AA-3510-01 2 179594165 179594165 G A TTN Nonsense_Mutation p.R6240* 0.23 TCGA-AA-3510-01 2 179594264 179594264 G A TTN Missense_Mutation p.P6207S 0.43 TCGA-AA-3510-01 2 179599177 179599177 G T TTN Missense_Mutation p.S5125Y 0.24 TCGA-AA-3510-01 2 179600340 179600340 G T TTN Missense_Mutation p.L4945I 0.34 TCGA-AA-3510-01 2 179600700 179600700 C A TTN Nonsense_Mutation p.E4825* 0.34 TCGA-AA-3510-01 2 179610806 179610806 G A TTN Intron 0.30 TCGA-AA-3510-01 2 179611124 179611124 C T TTN Intron 0.28 TCGA-AA-3510-01 2 179612518 179612518 G T TTN Intron 0.27 TCGA-AA-3510-01 2 179612932 179612932 G T TTN Intron 0.37 TCGA-AA-3510-01 2 179612968 179612968 G T TTN Intron 0.29 TCGA-AA-3510-01 2 179613532 179613532 A C TTN Intron 0.29 TCGA-AA-3510-01 2 179632582 179632582 C A TTN Silent p.G3125G 0.15 TCGA-AA-3510-01 2 179650375 179650375 G T TTN Missense_Mutation p.S822Y 0.38 TCGA-AA-3510-01 2 179702333 179702333 C A CCDC141 Nonsense_Mutation p.E1205* 0.28 TCGA-AA-3510-01 2 180810028 180810028 G T CWC22 Nonsense_Mutation p.S852* 0.29 TCGA-AA-3510-01 2 182402674 182402674 C T CERKL 3'Flank 0.24 TCGA-AA-3510-01 2 182543250 182543250 C T NEUROD1 Missense_Mutation p.R113H 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 2 182766798 182766798 G A SSFA2 Missense_Mutation p.D340N 0.34 tolerated(0.11) probably_damaging(0.969) TCGA-AA-3510-01 2 183094755 183094755 A G PDE1A Missense_Mutation p.I234T 0.33 deleterious(0) possibly_damaging(0.772) TCGA-AA-3510-01 2 183699570 183699570 C T FRZB 3'UTR 0.31 TCGA-AA-3510-01 2 183793599 183793599 T G NCKAP1 Missense_Mutation p.K1000N 0.08 tolerated(0.29) benign(0.026) TCGA-AA-3510-01 2 185801235 185801235 C A ZNF804A Missense_Mutation p.S371Y 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3510-01 2 185803873 185803873 T C ZNF804A 3'UTR 0.29 TCGA-AA-3510-01 2 186670150 186670150 G T FSIP2 Nonsense_Mutation p.E5462* 0.30 TCGA-AA-3510-01 2 18736985 18736985 G A RDH14 Silent p.F161F 0.09 TCGA-AA-3510-01 2 18768783 18768783 G A NT5C1B Missense_Mutation p.R36C 0.12 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-AA-3510-01 2 188361689 188361689 C T TFPI Missense_Mutation p.E80K 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 2 189851806 189851806 T G COL3A1 Missense_Mutation p.S157A 0.31 unknown(0) TCGA-AA-3510-01 2 189864274 189864274 C A COL3A1 Missense_Mutation p.L734I 0.25 unknown(0) TCGA-AA-3510-01 2 189901415 189901415 T G COL5A2 Missense_Mutation p.K1347T 0.24 unknown(0) TCGA-AA-3510-01 2 190428311 190428311 G A SLC40A1 Silent p.I467I 0.31 TCGA-AA-3510-01 2 190444542 190444542 A G SLC40A1 Silent p.T36T 0.27 TCGA-AA-3510-01 2 190532075 190532075 G A ASNSD1 Missense_Mutation p.R406Q 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 2 190618698 190618698 G A OSGEPL1 Missense_Mutation p.R303W 0.45 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 2 191301650 191301650 G T MFSD6 Nonsense_Mutation p.E299* 0.20 TCGA-AA-3510-01 2 191523976 191523976 C A NAB1 Missense_Mutation p.S25Y 0.26 tolerated(1) benign(0.424) TCGA-AA-3510-01 2 191894445 191894445 C A STAT4 3'UTR 0.26 TCGA-AA-3510-01 2 1926104 1926104 C T MYT1L Silent p.K479K 0.28 TCGA-AA-3510-01 2 196602738 196602738 C T DNAH7 Silent p.T3994T 0.29 TCGA-AA-3510-01 2 196673408 196673408 A C DNAH7 Missense_Mutation p.L3361V 0.28 tolerated(0.46) benign(0.005) TCGA-AA-3510-01 2 196729671 196729671 A C DNAH7 Missense_Mutation p.I2236M 0.29 tolerated(0.08) benign(0.006) TCGA-AA-3510-01 2 197080631 197080631 C A HECW2 Missense_Mutation p.R1522I 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 2 197106879 197106879 G A HECW2 Silent p.F1193F 0.39 TCGA-AA-3510-01 2 197594435 197594435 C A CCDC150 Intron 0.19 TCGA-AA-3510-01 2 198572141 198572141 G A MARS2 3'UTR 0.26 TCGA-AA-3510-01 2 201761875 201761875 G A NIF3L1 Missense_Mutation p.R268Q 0.35 tolerated(0.07) benign(0.377) TCGA-AA-3510-01 2 202172323 202172323 G A ALS2CR12 Silent p.F266F 0.19 TCGA-AA-3510-01 2 202260102 202260102 G A TRAK2 Nonsense_Mutation p.R279* 0.26 TCGA-AA-3510-01 2 202563407 202563407 G A MPP4 5'UTR 0.41 TCGA-AA-3510-01 2 202571698 202571698 C A ALS2 Missense_Mutation p.R1484L 0.33 deleterious(0.01) benign(0.366) TCGA-AA-3510-01 2 202571718 202571718 C G ALS2 Missense_Mutation p.L1477F 0.33 deleterious(0.03) benign(0.03) TCGA-AA-3510-01 2 202900171 202900171 G A FZD7 Silent p.S267S 0.32 TCGA-AA-3510-01 2 202902211 202902211 C T FZD7 3'UTR 0.58 TCGA-AA-3510-01 2 204031988 204031988 C T NBEAL1 Nonsense_Mutation p.R1939* 0.29 TCGA-AA-3510-01 2 204064140 204064140 T C NBEAL1 Missense_Mutation p.F2374S 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 2 206547964 206547964 T G NRP2 5'UTR 0.20 TCGA-AA-3510-01 2 207172940 207172940 G A ZDBF2 Missense_Mutation p.D1230N 0.35 tolerated(0.13) possibly_damaging(0.539) TCGA-AA-3510-01 2 207655368 207655368 G T FASTKD2 Missense_Mutation p.M657I 0.14 deleterious(0.01) benign(0.315) TCGA-AA-3510-01 2 20838410 20838410 T C HS1BP3 Missense_Mutation p.T137A 0.26 tolerated(0.2) probably_damaging(0.913) TCGA-AA-3510-01 2 20871117 20871117 G A GDF7 Missense_Mutation p.D429N 0.39 deleterious(0) probably_damaging(0.981) TCGA-AA-3510-01 2 209136242 209136242 A C PIKFYVE 5'UTR 0.32 TCGA-AA-3510-01 2 209191017 209191017 G T PIKFYVE Missense_Mutation p.R1161I 0.32 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 2 210557473 210557473 A G MAP2 Silent p.K193K 0.13 TCGA-AA-3510-01 2 210559471 210559471 A C MAP2 Missense_Mutation p.K859N 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 2 210905068 210905068 T G KANSL1L Intron 0.07 TCGA-AA-3510-01 2 210993853 210993853 C T KANSL1L Missense_Mutation p.V378I 0.39 tolerated(0.96) benign(0.113) TCGA-AA-3510-01 2 211018834 211018834 G C KANSL1L Missense_Mutation p.T158S 0.21 deleterious(0.01) possibly_damaging(0.615) TCGA-AA-3510-01 2 211018963 211018963 T G KANSL1L Missense_Mutation p.N115T 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 2 212285327 212285327 G A ERBB4 Missense_Mutation p.R992C 0.40 tolerated(0.17) benign(0.014) TCGA-AA-3510-01 2 212483952 212483952 T G ERBB4 Missense_Mutation p.K751Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 2 212522512 212522512 C A ERBB4 Missense_Mutation p.W638L 0.25 tolerated(0.71) benign(0.006) TCGA-AA-3510-01 2 212576798 212576798 G T ERBB4 Silent p.I367I 0.08 TCGA-AA-3510-01 2 213878633 213878633 T C IKZF2 Silent p.E246E 0.19 TCGA-AA-3510-01 2 214727231 214727231 G A SPAG16 Missense_Mutation p.D365N 0.46 tolerated(0.51) benign(0.01) TCGA-AA-3510-01 2 215875164 215875164 A T ABCA12 Missense_Mutation p.I788N 0.39 deleterious(0) possibly_damaging(0.862) TCGA-AA-3510-01 2 215910651 215910651 G A ABCA12 Missense_Mutation p.A261V 0.39 tolerated(0.48) benign(0.001) TCGA-AA-3510-01 2 215914496 215914496 C A ABCA12 Nonsense_Mutation p.E183* 0.36 TCGA-AA-3510-01 2 216964749 216964749 G T TMEM169 Missense_Mutation p.E126D 0.26 tolerated(0.38) benign(0.078) TCGA-AA-3510-01 2 217541382 217541382 G T IGFBP5 3'UTR 0.43 TCGA-AA-3510-01 2 219000099 219000099 T G CXCR2 Missense_Mutation p.V192G 0.30 tolerated(0.35) benign(0.026) TCGA-AA-3510-01 2 219029911 219029911 C A CXCR1 Missense_Mutation p.Q8H 0.24 tolerated(0.3) benign(0.061) TCGA-AA-3510-01 2 219290494 219290494 G A VIL1 Missense_Mutation p.E103K 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 2 219498867 219498867 G A PLCD4 Missense_Mutation p.R549H 0.28 deleterious(0) probably_damaging(0.992) TCGA-AA-3510-01 2 219537536 219537536 A C STK36 5'UTR 0.10 TCGA-AA-3510-01 2 220034285 220034285 G T SLC23A3 Nonsense_Mutation p.S93* 0.36 TCGA-AA-3510-01 2 220166388 220166388 G A PTPRN Missense_Mutation p.R350C 0.49 deleterious(0) possibly_damaging(0.677) TCGA-AA-3510-01 2 220167154 220167154 G A PTPRN Silent p.G233G 0.14 TCGA-AA-3510-01 2 220346171 220346171 G A SPEG Missense_Mutation p.D1839N 0.34 probably_damaging(0.928) TCGA-AA-3510-01 2 220349100 220349100 G T SPEG Missense_Mutation p.E2305D 0.09 benign(0.063) TCGA-AA-3510-01 2 224824263 224824263 G A MRPL44 Silent p.P64P 0.36 TCGA-AA-3510-01 2 224847452 224847452 G T SERPINE2 Missense_Mutation p.L323I 0.22 deleterious(0.01) probably_damaging(0.936) TCGA-AA-3510-01 2 228176758 228176758 C A COL4A3 3'UTR 0.41 TCGA-AA-3510-01 2 228195397 228195397 C T MFF Nonsense_Mutation p.R32* 0.35 TCGA-AA-3510-01 2 228476050 228476050 G T C2orf83 3'UTR 0.09 TCGA-AA-3510-01 2 228846523 228846523 G T SPHKAP Silent p.I1671I 0.29 TCGA-AA-3510-01 2 228884285 228884285 G A SPHKAP Missense_Mutation p.L429F 0.34 tolerated(0.24) benign(0.019) TCGA-AA-3510-01 2 231103481 231103481 T G SP140 Intron 0.39 TCGA-AA-3510-01 2 231113641 231113641 G T SP140 Nonsense_Mutation p.E312* 0.30 TCGA-AA-3510-01 2 232602788 232602788 G A PDE6D Missense_Mutation p.S67L 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 2 233412831 233412831 C T TIGD1 Missense_Mutation p.E588K 0.47 deleterious_low_confidence(0.04) benign(0.001) TCGA-AA-3510-01 2 233877792 233877792 C T NGEF 5'UTR 0.37 TCGA-AA-3510-01 2 234345025 234345025 G A DGKD Missense_Mutation p.D253N 0.27 deleterious(0.01) probably_damaging(0.934) TCGA-AA-3510-01 2 234405463 234405463 C A USP40 Nonsense_Mutation p.E922* 0.31 TCGA-AA-3510-01 2 234580653 234580653 G A UGT1A9 Missense_Mutation p.A25T 0.42 tolerated(0.05) probably_damaging(0.945) TCGA-AA-3510-01 2 234581341 234581341 G A UGT1A9 Missense_Mutation p.R254Q 0.15 deleterious(0.01) possibly_damaging(0.903) TCGA-AA-3510-01 2 234621853 234621853 G T UGT1A5 Missense_Mutation p.E72D 0.24 tolerated(0.07) benign(0.074) TCGA-AA-3510-01 2 234737612 234737612 C T MROH2A Missense_Mutation p.A1447V 0.11 tolerated(0.08) benign(0.016) TCGA-AA-3510-01 2 234746211 234746211 G A HJURP 3'UTR 0.35 TCGA-AA-3510-01 2 234750256 234750256 G A HJURP Silent p.F390F 0.33 TCGA-AA-3510-01 2 237490292 237490292 C A ACKR3 3'UTR 0.36 TCGA-AA-3510-01 2 238280284 238280284 A T COL6A3 Intron 0.42 TCGA-AA-3510-01 2 238666185 238666185 G T LRRFIP1 Intron 0.35 TCGA-AA-3510-01 2 238725761 238725761 G T RBM44 Nonsense_Mutation p.E68* 0.13 TCGA-AA-3510-01 2 238726925 238726925 A C RBM44 Missense_Mutation p.T456P 0.37 tolerated(0.35) benign(0.14) TCGA-AA-3510-01 2 239133917 239133917 G T AC016757.3 Missense_Mutation p.L120I 0.34 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-AA-3510-01 2 239140420 239140420 A C AC016757.3 5'Flank 0.45 TCGA-AA-3510-01 2 239184523 239184523 C T PER2 Silent p.S103S 0.38 TCGA-AA-3510-01 2 239253146 239253146 G T TRAF3IP1 Nonsense_Mutation p.E390* 0.21 TCGA-AA-3510-01 2 241066277 241066277 C T MYEOV2 Silent p.A154A 0.37 TCGA-AA-3510-01 2 241631511 241631511 C T AQP12A Silent p.L48L 0.38 TCGA-AA-3510-01 2 241685531 241685531 G A KIF1A Missense_Mutation p.R1043C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 2 241689889 241689889 G A KIF1A Silent p.G978G 0.32 TCGA-AA-3510-01 2 241712549 241712549 G T KIF1A Missense_Mutation p.L388I 0.09 tolerated(0.62) possibly_damaging(0.493) TCGA-AA-3510-01 2 242163334 242163334 G A ANO7 Silent p.T903T 0.38 TCGA-AA-3510-01 2 242793420 242793420 G A PDCD1 Silent p.F219F 0.23 TCGA-AA-3510-01 2 242794117 242794117 C T PDCD1 Missense_Mutation p.R204H 0.37 tolerated(0.06) benign(0.353) TCGA-AA-3510-01 2 24387196 24387196 C G FAM228B Missense_Mutation p.D307E 0.25 deleterious_low_confidence(0.01) benign(0.217) TCGA-AA-3510-01 2 24398370 24398370 G A FAM228A Silent p.A7A 0.31 TCGA-AA-3510-01 2 24521606 24521606 C A ITSN2 Missense_Mutation p.K474N 0.10 deleterious(0) unknown(0) TCGA-AA-3510-01 2 26407165 26407165 G A GAREML Missense_Mutation p.E150K 0.43 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 2 26492860 26492860 G A HADHB Silent p.A83A 0.28 TCGA-AA-3510-01 2 26501647 26501647 G A HADHB Missense_Mutation p.R203Q 0.28 deleterious(0.04) possibly_damaging(0.781) TCGA-AA-3510-01 2 26534051 26534051 G T GPR113 Missense_Mutation p.H849N 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 2 27677499 27677499 G A IFT172 Missense_Mutation p.R1134W 0.22 deleterious(0) probably_damaging(0.988) TCGA-AA-3510-01 2 27708251 27708251 G T IFT172 Missense_Mutation p.F53L 0.26 deleterious(0) possibly_damaging(0.891) TCGA-AA-3510-01 2 29052060 29052060 G A SPDYA Missense_Mutation p.E143K 0.12 deleterious(0) probably_damaging(0.982) TCGA-AA-3510-01 2 29145797 29145797 G A WDR43 Missense_Mutation p.A288T 0.30 tolerated(0.13) benign(0.217) TCGA-AA-3510-01 2 29226418 29226418 G A FAM179A Missense_Mutation p.A234T 0.31 deleterious(0.02) benign(0.047) TCGA-AA-3510-01 2 29368134 29368134 G A CLIP4 Missense_Mutation p.A308T 0.32 deleterious(0) probably_damaging(0.99) TCGA-AA-3510-01 2 29416563 29416563 G A ALK Nonsense_Mutation p.R1464* 0.37 TCGA-AA-3510-01 2 29416570 29416570 G T ALK Silent p.I1461I 0.40 TCGA-AA-3510-01 2 29754974 29754974 G T ALK Missense_Mutation p.L321I 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3510-01 2 31483473 31483473 C A EHD3 Missense_Mutation p.F200L 0.35 tolerated(0.08) benign(0.253) TCGA-AA-3510-01 2 31489204 31489204 C T EHD3 Silent p.F414F 0.41 TCGA-AA-3510-01 2 32254804 32254804 C T DPY30 Missense_Mutation p.R29K 0.06 tolerated(0.88) benign(0.004) TCGA-AA-3510-01 2 32842945 32842945 G T BIRC6 Nonsense_Mutation p.E4850* 0.42 TCGA-AA-3510-01 2 3381426 3381426 T C TSSC1 Missense_Mutation p.E12G 0.31 deleterious(0) possibly_damaging(0.775) TCGA-AA-3510-01 2 37215825 37215825 G A HEATR5B Missense_Mutation p.L1959F 0.19 tolerated(0.11) benign(0.105) TCGA-AA-3510-01 2 37406712 37406712 G A SULT6B1 Nonsense_Mutation p.R102* 0.35 TCGA-AA-3510-01 2 38244389 38244389 G A RMDN2 Intron 0.27 TCGA-AA-3510-01 2 38297822 38297822 G A CYP1B1 3'UTR 0.34 TCGA-AA-3510-01 2 38975790 38975790 C G SRSF7 Missense_Mutation p.R131P 0.22 tolerated(0.14) unknown(0) TCGA-AA-3510-01 2 39411768 39411768 G A CDKL4 Silent p.F252F 0.17 TCGA-AA-3510-01 2 39998698 39998698 A C THUMPD2 Nonsense_Mutation p.L70* 0.10 TCGA-AA-3510-01 2 40655861 40655861 G A SLC8A1 Silent p.C520C 0.15 TCGA-AA-3510-01 2 44052034 44052034 A C ABCG5 Missense_Mutation p.F300V 0.27 tolerated(0.06) possibly_damaging(0.498) TCGA-AA-3510-01 2 44128483 44128483 T C LRPPRC Missense_Mutation p.N1182S 0.22 deleterious(0.05) probably_damaging(0.947) TCGA-AA-3510-01 2 44457218 44457218 C A PPM1B Intron 0.11 TCGA-AA-3510-01 2 45832557 45832557 C T SRBD1 Silent p.A8A 0.45 TCGA-AA-3510-01 2 46739761 46739761 G A ATP6V1E2 Silent p.I30I 0.27 TCGA-AA-3510-01 2 46985922 46985922 G A SOCS5 Missense_Mutation p.E85K 0.35 deleterious_low_confidence(0.04) benign(0.057) TCGA-AA-3510-01 2 46985951 46985951 C T SOCS5 Silent p.I94I 0.28 TCGA-AA-3510-01 2 46985968 46985968 C A SOCS5 Missense_Mutation p.S100Y 0.32 tolerated_low_confidence(0.06) benign(0.009) TCGA-AA-3510-01 2 47748883 47748883 G A KCNK12 Silent p.F152F 0.42 TCGA-AA-3510-01 2 48573856 48573856 A C FOXN2 Missense_Mutation p.K168T 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 2 48950766 48950766 G T LHCGR Missense_Mutation p.F151L 0.31 deleterious(0.02) probably_damaging(0.93) TCGA-AA-3510-01 2 50724666 50724666 G A NRXN1 Missense_Mutation p.A935V 0.37 deleterious(0.02) possibly_damaging(0.53) TCGA-AA-3510-01 2 51254931 51254931 C T NRXN1 Missense_Mutation p.E161K 0.34 tolerated(0.09) benign(0.023) TCGA-AA-3510-01 2 55106705 55106705 C T EML6 Missense_Mutation p.S789L 0.33 deleterious(0) possibly_damaging(0.84) TCGA-AA-3510-01 2 55191724 55191724 G A EML6 Missense_Mutation p.R1783Q 0.35 tolerated(0.13) benign(0.004) TCGA-AA-3510-01 2 55252433 55252433 G T RTN4 Missense_Mutation p.F934L 0.34 tolerated(0.4) benign(0) TCGA-AA-3510-01 2 55254493 55254493 C A RTN4 Nonsense_Mutation p.E248* 0.30 TCGA-AA-3510-01 2 55433495 55433495 G T CLHC1 Nonsense_Mutation p.S306* 0.31 TCGA-AA-3510-01 2 55549818 55549818 T C CCDC88A Missense_Mutation p.N1002S 0.32 tolerated(0.22) possibly_damaging(0.634) TCGA-AA-3510-01 2 55562183 55562183 G T CCDC88A Missense_Mutation p.L592I 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 2 58275980 58275980 G T VRK2 Missense_Mutation p.R5I 0.29 deleterious(0.04) possibly_damaging(0.723) TCGA-AA-3510-01 2 5832926 5832926 G A SOX11 Missense_Mutation p.E25K 0.46 deleterious(0) possibly_damaging(0.491) TCGA-AA-3510-01 2 5838331 5838331 C A SOX11 3'UTR 0.33 TCGA-AA-3510-01 2 5838915 5838915 C A SOX11 3'UTR 0.36 TCGA-AA-3510-01 2 5839651 5839651 C A SOX11 3'UTR 0.14 TCGA-AA-3510-01 2 5839975 5839975 G T SOX11 3'UTR 0.15 TCGA-AA-3510-01 2 60988921 60988921 T G PAPOLG Missense_Mutation p.I75M 0.34 deleterious(0.01) possibly_damaging(0.854) TCGA-AA-3510-01 2 61238980 61238980 G A PUS10 Missense_Mutation p.L16F 0.34 tolerated(0.16) benign(0.017) TCGA-AA-3510-01 2 61315542 61315542 C T KIAA1841 Missense_Mutation p.P343S 0.16 tolerated(0.4) benign(0.001) TCGA-AA-3510-01 2 61484361 61484361 A C USP34 Missense_Mutation p.I1990S 0.07 deleterious(0) possibly_damaging(0.574) TCGA-AA-3510-01 2 61726900 61726900 C A XPO1 Missense_Mutation p.D180Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-AA-3510-01 2 63182665 63182665 C A EHBP1 Missense_Mutation p.S812Y 0.14 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-AA-3510-01 2 64113477 64113477 C T UGP2 Silent p.G292G 0.09 TCGA-AA-3510-01 2 64863646 64863646 G A SERTAD2 Silent p.L120L 0.37 TCGA-AA-3510-01 2 64863715 64863715 G A SERTAD2 Silent p.S97S 0.26 TCGA-AA-3510-01 2 68274334 68274334 A G C1D Missense_Mutation p.S37P 0.08 deleterious(0.02) possibly_damaging(0.653) TCGA-AA-3510-01 2 68692174 68692174 A C FBXO48 Missense_Mutation p.F35C 0.22 deleterious(0.01) possibly_damaging(0.505) TCGA-AA-3510-01 2 69350184 69350184 C T ANTXR1 Silent p.L280L 0.21 TCGA-AA-3510-01 2 69472360 69472360 C T ANTXR1 Missense_Mutation p.R480C 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-AA-3510-01 2 70187857 70187857 C A ASPRV1 Nonsense_Mutation p.E322* 0.38 TCGA-AA-3510-01 2 70904939 70904939 A C ADD2 Missense_Mutation p.F485C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 2 70919587 70919587 G A ADD2 Missense_Mutation p.A218V 0.22 deleterious(0.04) probably_damaging(0.941) TCGA-AA-3510-01 2 71036449 71036449 C T CLEC4F Missense_Mutation p.C575Y 0.37 tolerated_low_confidence(0.16) benign(0.004) TCGA-AA-3510-01 2 71360606 71360606 G A MPHOSPH10 Missense_Mutation p.R223Q 0.35 tolerated(0.5) benign(0.003) TCGA-AA-3510-01 2 71766360 71766360 G T DYSF Nonsense_Mutation p.E523* 0.34 TCGA-AA-3510-01 2 73144130 73144130 G A EMX1 5'Flank 0.16 TCGA-AA-3510-01 2 73519133 73519133 C T EGR4 Missense_Mutation p.A408T 0.43 tolerated(0.41) benign(0.008) TCGA-AA-3510-01 2 73651845 73651845 G A ALMS1 Missense_Mutation p.R351Q 0.28 benign(0.001) TCGA-AA-3510-01 2 74043823 74043823 C T C2orf78 Missense_Mutation p.R825W 0.39 tolerated(0.11) benign(0.015) TCGA-AA-3510-01 2 74328238 74328238 C T TET3 Silent p.G1306G 0.32 TCGA-AA-3510-01 2 74761232 74761232 G A LOXL3 Missense_Mutation p.L691F 0.10 tolerated(1) benign(0.133) TCGA-AA-3510-01 2 77749424 77749424 T G LRRTM4 5'UTR 0.27 TCGA-AA-3510-01 2 80835326 80835326 T C CTNNA2 Silent p.C771C 0.19 TCGA-AA-3510-01 2 84518027 84518027 C T FUNDC2P2 RNA 0.34 TCGA-AA-3510-01 2 84899469 84899469 G A DNAH6 Missense_Mutation p.R2158Q 0.09 tolerated(0.17) benign(0.055) TCGA-AA-3510-01 2 85011870 85011870 G A DNAH6 Missense_Mutation p.R3630Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 2 85046575 85046575 C T DNAH6 3'UTR 0.36 TCGA-AA-3510-01 2 85614228 85614228 G T ELMOD3 Intron 0.29 TCGA-AA-3510-01 2 85776986 85776986 A G GGCX 3'UTR 0.36 TCGA-AA-3510-01 2 85779555 85779555 C A GGCX Missense_Mutation p.D475Y 0.34 deleterious(0.01) possibly_damaging(0.824) TCGA-AA-3510-01 2 86847539 86847539 C T RNF103-CHMP3 Missense_Mutation p.E16K 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-AA-3510-01 2 87201283 87201283 G A RGPD1 Missense_Mutation p.R446Q 0.14 tolerated(0.05) benign(0.274) TCGA-AA-3510-01 2 88409902 88409902 A G SMYD1 Silent p.L448L 0.18 TCGA-AA-3510-01 2 8870817 8870817 T C KIDINS220 3'UTR 0.08 TCGA-AA-3510-01 2 88885439 88885439 C A EIF2AK3 Nonsense_Mutation p.E524* 0.31 TCGA-AA-3510-01 2 89399625 89399625 C A IGKV1-16 Missense_Mutation p.M26I 0.08 deleterious(0.02) benign(0.038) TCGA-AA-3510-01 2 97025928 97025928 G A NCAPH Missense_Mutation p.D469N 0.24 tolerated(0.44) possibly_damaging(0.477) TCGA-AA-3510-01 2 97030300 97030300 G A NCAPH Missense_Mutation p.D557N 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 2 97338926 97338926 A G FER1L5 RNA 0.30 TCGA-AA-3510-01 2 98274775 98274775 G A ACTR1B Missense_Mutation p.A221V 0.38 tolerated(0.16) benign(0.008) TCGA-AA-3510-01 2 98412853 98412853 C A TMEM131 Nonsense_Mutation p.E1010* 0.27 TCGA-AA-3510-01 2 99012502 99012502 G A CNGA3 Missense_Mutation p.R290H 0.43 deleterious(0) probably_damaging(0.99) TCGA-AA-3510-01 2 99790412 99790412 T A MITD1 Missense_Mutation p.E73D 0.25 deleterious(0.02) possibly_damaging(0.818) TCGA-AA-3510-01 2 99804685 99804685 C T MRPL30 Missense_Mutation p.R33C 0.27 tolerated(0.08) benign(0.082) TCGA-AA-3510-01 2 99811358 99811358 A C MRPL30 Missense_Mutation p.K93Q 0.28 deleterious(0.04) possibly_damaging(0.734) TCGA-AA-3510-01 2 99858878 99858878 G A LYG2 Silent p.F196F 0.17 TCGA-AA-3510-01 2 99860518 99860518 C A LYG2 Missense_Mutation p.R155I 0.20 tolerated(0.41) benign(0.292) TCGA-AA-3510-01 2 99901199 99901199 C A LYG1 Nonsense_Mutation p.E140* 0.39 TCGA-AA-3510-01 2 99912154 99912154 G A LYG1 5'UTR 0.39 TCGA-AA-3510-01 2 99980786 99980786 G A EIF5B Missense_Mutation p.R397K 0.34 benign(0.067) TCGA-AA-3510-01 3 100963522 100963522 A C IMPG2 Silent p.S551S 0.39 TCGA-AA-3510-01 3 101038520 101038520 C T IMPG2 Missense_Mutation p.R81K 0.25 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 3 101540612 101540612 C T NXPE3 Silent p.S498S 0.26 TCGA-AA-3510-01 3 101571830 101571830 T G NFKBIZ Missense_Mutation p.F187L 0.10 tolerated_low_confidence(0.39) benign(0.012) TCGA-AA-3510-01 3 10191743 10191743 C A VHL 3'UTR 0.39 TCGA-AA-3510-01 3 10370673 10370673 T C ATP2B2 Missense_Mutation p.D1186G 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3510-01 3 105377641 105377641 G A CBLB 3'UTR 0.25 TCGA-AA-3510-01 3 107937496 107937496 C A IFT57 Missense_Mutation p.R127I 0.31 tolerated(0.41) benign(0.007) TCGA-AA-3510-01 3 108076716 108076716 A C HHLA2 Missense_Mutation p.E237D 0.43 tolerated(0.18) benign(0.127) TCGA-AA-3510-01 3 108117506 108117506 C A MYH15 Missense_Mutation p.R1724I 0.19 deleterious(0) possibly_damaging(0.882) TCGA-AA-3510-01 3 109047735 109047735 A G DPPA4 Splice_Site p.X293_splice 0.37 TCGA-AA-3510-01 3 11067996 11067996 C T SLC6A1 Silent p.G343G 0.32 TCGA-AA-3510-01 3 111312688 111312688 G A ZBED2 Missense_Mutation p.R121C 0.31 deleterious(0.03) benign(0.001) TCGA-AA-3510-01 3 111313652 111313652 G T ZBED2 5'UTR 0.30 TCGA-AA-3510-01 3 111319755 111319755 C A CD96 Missense_Mutation p.L377I 0.39 tolerated(0.08) benign(0.039) TCGA-AA-3510-01 3 111603841 111603841 C A PHLDB2 Missense_Mutation p.S306Y 0.26 deleterious(0) possibly_damaging(0.707) TCGA-AA-3510-01 3 111799769 111799769 G A TMPRSS7 Silent p.S664S 0.26 TCGA-AA-3510-01 3 112066436 112066436 C A CD200 Missense_Mutation p.F176L 0.19 tolerated(0.6) benign(0.001) TCGA-AA-3510-01 3 112289401 112289401 A C SLC35A5 Missense_Mutation p.N82H 0.31 tolerated(0.13) benign(0.003) TCGA-AA-3510-01 3 112564700 112564700 A C CD200R1L 5'UTR 0.21 TCGA-AA-3510-01 3 112727131 112727131 G A C3orf17 Silent p.I374I 0.34 TCGA-AA-3510-01 3 113084990 113084990 G T WDR52 Missense_Mutation p.R871S 0.30 deleterious(0.04) probably_damaging(0.914) TCGA-AA-3510-01 3 113225396 113225396 C T SPICE1 Silent p.P19P 0.27 TCGA-AA-3510-01 3 113346705 113346705 C T SIDT1 3'UTR 0.41 TCGA-AA-3510-01 3 113375227 113375227 G A KIAA2018 Missense_Mutation p.R1768W 0.30 probably_damaging(1) TCGA-AA-3510-01 3 113378525 113378525 T C KIAA2018 Silent p.G668G 0.33 TCGA-AA-3510-01 3 113563430 113563430 G T GRAMD1C Missense_Mutation p.E36D 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.527) TCGA-AA-3510-01 3 118621425 118621425 C T IGSF11 Missense_Mutation p.R413Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 3 118623493 118623493 A G IGSF11 Splice_Site p.X285_splice 0.30 TCGA-AA-3510-01 3 118870163 118870163 T G C3orf30 3'UTR 0.22 TCGA-AA-3510-01 3 119165904 119165904 C T TMEM39A Missense_Mutation p.R179Q 0.38 tolerated(0.06) possibly_damaging(0.45) TCGA-AA-3510-01 3 119434705 119434705 C T MAATS1 Intron 0.32 TCGA-AA-3510-01 3 119445071 119445071 G A MAATS1 Missense_Mutation p.E246K 0.31 deleterious(0.02) possibly_damaging(0.526) TCGA-AA-3510-01 3 120495398 120495398 A G GTF2E1 Missense_Mutation p.D260G 0.31 tolerated(0.06) benign(0.007) TCGA-AA-3510-01 3 120499990 120499990 G T GTF2E1 Missense_Mutation p.K331N 0.20 deleterious(0) possibly_damaging(0.776) TCGA-AA-3510-01 3 121097679 121097679 C T STXBP5L Nonsense_Mutation p.R789* 0.64 TCGA-AA-3510-01 3 121126141 121126141 G A STXBP5L Missense_Mutation p.R904Q 0.43 tolerated(0.22) benign(0.027) TCGA-AA-3510-01 3 121158873 121158873 C T POLQ Missense_Mutation p.G2452E 0.15 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 3 121187201 121187201 C T POLQ Missense_Mutation p.E2266K 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-AA-3510-01 3 121209199 121209199 C T POLQ Missense_Mutation p.R860Q 0.31 tolerated(0.07) benign(0.059) TCGA-AA-3510-01 3 121400698 121400698 C A GOLGB1 Missense_Mutation p.K2903N 0.38 possibly_damaging(0.618) TCGA-AA-3510-01 3 121658338 121658338 C A SLC15A2 Missense_Mutation p.S635Y 0.24 deleterious(0) possibly_damaging(0.616) TCGA-AA-3510-01 3 12182164 12182164 C T SYN2 RNA 0.12 TCGA-AA-3510-01 3 122128832 122128832 A C FAM162A 3'UTR 0.59 TCGA-AA-3510-01 3 122630875 122630875 C T SEMA5B Missense_Mutation p.D1034N 0.32 tolerated(0.19) benign(0.27) TCGA-AA-3510-01 3 122630882 122630882 G A SEMA5B Silent p.C1031C 0.41 TCGA-AA-3510-01 3 123634201 123634201 C A CCDC14 Nonsense_Mutation p.E722* 0.37 TCGA-AA-3510-01 3 123675311 123675311 T G CCDC14 Intron 0.34 TCGA-AA-3510-01 3 123699380 123699380 C T ROPN1 5'UTR 0.32 TCGA-AA-3510-01 3 124578238 124578238 A G ITGB5 Missense_Mutation p.V71A 0.28 tolerated(0.11) benign(0.008) TCGA-AA-3510-01 3 124692591 124692591 G A HEG1 Missense_Mutation p.T1327M 0.10 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 3 12531405 12531405 G T TSEN2 Nonsense_Mutation p.E36* 0.26 TCGA-AA-3510-01 3 12544851 12544851 G A TSEN2 Silent p.T133T 0.31 TCGA-AA-3510-01 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.08 deleterious(0.01) benign(0.226) TCGA-AA-3510-01 3 126747103 126747103 A G PLXNA1 Missense_Mutation p.Q1530R 0.08 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 3 1269509 1269509 C T CNTN6 Nonsense_Mutation p.Q64* 0.35 TCGA-AA-3510-01 3 127642130 127642130 G T KBTBD12 Missense_Mutation p.D76Y 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 128690246 128690246 T A KIAA1257 Missense_Mutation p.K351I 0.32 deleterious(0) probably_damaging(0.988) TCGA-AA-3510-01 3 128696896 128696896 G T KIAA1257 Missense_Mutation p.S267Y 0.32 deleterious(0.02) possibly_damaging(0.885) TCGA-AA-3510-01 3 129231177 129231177 G A IFT122 Missense_Mutation p.R1021H 0.36 tolerated(0.44) possibly_damaging(0.493) TCGA-AA-3510-01 3 129252539 129252539 C T RHO Missense_Mutation p.T342M 0.39 deleterious(0) probably_damaging(0.982) TCGA-AA-3510-01 3 130174372 130174372 G T COL6A5 Nonsense_Mutation p.E2218* 0.12 TCGA-AA-3510-01 3 130284282 130284282 G A COL6A6 Missense_Mutation p.G369D 0.37 tolerated(0.16) possibly_damaging(0.744) TCGA-AA-3510-01 3 130346195 130346195 C T COL6A6 Silent p.V1658V 0.33 TCGA-AA-3510-01 3 130712824 130712824 A C ATP2C1 Missense_Mutation p.N681H 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 130718463 130718463 G A ATP2C1 Silent p.P897P 0.35 TCGA-AA-3510-01 3 131217025 131217025 G A MRPL3 Missense_Mutation p.R156C 0.33 tolerated(0.13) benign(0.007) TCGA-AA-3510-01 3 132192017 132192017 G A DNAJC13 Missense_Mutation p.R746Q 0.07 deleterious(0) benign(0.047) TCGA-AA-3510-01 3 133475182 133475182 G A TF Splice_Site p.X231_splice 0.22 TCGA-AA-3510-01 3 133483076 133483076 G A TF Silent p.A418A 0.31 TCGA-AA-3510-01 3 133557066 133557066 C A RAB6B Nonsense_Mutation p.E147* 0.33 TCGA-AA-3510-01 3 133647897 133647897 C A C3orf36 5'UTR 0.25 TCGA-AA-3510-01 3 1337345 1337345 G A CNTN6 Missense_Mutation p.R172Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 3 134250767 134250767 G T CEP63 Missense_Mutation p.K101N 0.08 deleterious(0.05) benign(0.066) TCGA-AA-3510-01 3 13613065 13613065 G T FBLN2 Nonsense_Mutation p.E404* 0.31 TCGA-AA-3510-01 3 137813815 137813815 C A DZIP1L Missense_Mutation p.K199N 0.33 deleterious(0.01) benign(0.299) TCGA-AA-3510-01 3 137843191 137843191 C T A4GNT Missense_Mutation p.R313H 0.43 deleterious(0.02) benign(0.067) TCGA-AA-3510-01 3 138037034 138037034 C T NME9 Missense_Mutation p.E53K 0.29 tolerated(0.05) benign(0.031) TCGA-AA-3510-01 3 138117397 138117397 C T MRAS Missense_Mutation p.A145V 0.12 deleterious(0) probably_damaging(0.938) TCGA-AA-3510-01 3 1394084 1394084 G A CNTN6 Missense_Mutation p.A481T 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 141328315 141328315 G T RASA2 Missense_Mutation p.R760I 0.17 deleterious(0) probably_damaging(0.994) TCGA-AA-3510-01 3 141499329 141499329 C A GRK7 Silent p.I242I 0.33 TCGA-AA-3510-01 3 141923622 141923622 C T GK5 Missense_Mutation p.G109E 0.41 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3510-01 3 14695961 14695961 G A CCDC174 Missense_Mutation p.R24Q 0.34 deleterious(0.03) benign(0.006) TCGA-AA-3510-01 3 148459322 148459322 G A AGTR1 Missense_Mutation p.R167Q 0.30 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 3 148459523 148459523 G T AGTR1 Missense_Mutation p.R234I 0.36 deleterious(0.01) probably_damaging(0.972) TCGA-AA-3510-01 3 148586710 148586710 C A CPA3 Missense_Mutation p.F51L 0.11 tolerated(0.45) benign(0.337) TCGA-AA-3510-01 3 14862492 14862492 C T FGD5 Silent p.I638I 0.29 TCGA-AA-3510-01 3 148847559 148847559 C T HPS3 Missense_Mutation p.P17S 0.35 tolerated(0.28) probably_damaging(0.986) TCGA-AA-3510-01 3 150127942 150127942 T G TSC22D2 Missense_Mutation p.F269V 0.27 tolerated(0.1) benign(0.307) TCGA-AA-3510-01 3 150460027 150460027 C T SIAH2 Missense_Mutation p.M292I 0.41 tolerated(0.21) benign(0.002) TCGA-AA-3510-01 3 150645837 150645837 G A CLRN1 Silent p.C208C 0.36 TCGA-AA-3510-01 3 151045887 151045887 G T P2RY13 Missense_Mutation p.F319L 0.24 tolerated(0.12) benign(0.049) TCGA-AA-3510-01 3 151046055 151046055 G A P2RY13 Silent p.V263V 0.07 TCGA-AA-3510-01 3 151055867 151055867 C T P2RY12 Missense_Mutation p.R256Q 0.28 deleterious(0) probably_damaging(0.973) TCGA-AA-3510-01 3 151093949 151093949 G T MED12L Nonsense_Mutation p.E1299* 0.28 TCGA-AA-3510-01 3 151112567 151112567 C T MED12L Missense_Mutation p.S1876L 0.33 tolerated_low_confidence(0.59) benign(0.054) TCGA-AA-3510-01 3 151163961 151163961 C T IGSF10 Missense_Mutation p.A1270T 0.25 tolerated(1) benign(0) TCGA-AA-3510-01 3 151164826 151164826 C T IGSF10 Silent p.T981T 0.35 TCGA-AA-3510-01 3 151166721 151166721 C A IGSF10 Missense_Mutation p.D350Y 0.31 deleterious(0.03) probably_damaging(0.91) TCGA-AA-3510-01 3 151171555 151171555 T G IGSF10 Missense_Mutation p.K111T 0.21 deleterious(0.01) probably_damaging(1) TCGA-AA-3510-01 3 151598806 151598806 C T SUCNR1 Missense_Mutation p.P159S 0.24 tolerated(0.41) benign(0.006) TCGA-AA-3510-01 3 152884114 152884114 C A RAP2B 3'UTR 0.38 TCGA-AA-3510-01 3 15480676 15480676 G A EAF1 3'UTR 0.34 TCGA-AA-3510-01 3 15520850 15520850 C A COLQ Nonsense_Mutation p.E121* 0.20 TCGA-AA-3510-01 3 15540155 15540155 C T COLQ Intron 0.43 TCGA-AA-3510-01 3 155520342 155520342 T G C3orf33 Missense_Mutation p.L8F 0.09 tolerated(0.1) benign(0.132) TCGA-AA-3510-01 3 156271470 156271470 C A SSR3 Missense_Mutation p.K78N 0.11 deleterious(0.04) probably_damaging(0.96) TCGA-AA-3510-01 3 156710984 156710984 A C RP11-6F2.3 5'Flank 0.37 TCGA-AA-3510-01 3 157271115 157271115 G T C3orf55 Missense_Mutation p.L23F 0.32 deleterious_low_confidence(0) possibly_damaging(0.644) TCGA-AA-3510-01 3 15727790 15727790 G A ANKRD28 Missense_Mutation p.R634W 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-AA-3510-01 3 157318252 157318252 G A C3orf55 3'UTR 0.31 TCGA-AA-3510-01 3 158407984 158407984 C T GFM1 Missense_Mutation p.P648S 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 160249298 160249298 T G KPNA4 Missense_Mutation p.K112T 0.26 tolerated(0.12) benign(0.009) TCGA-AA-3510-01 3 160803765 160803765 C T B3GALNT1 Missense_Mutation p.V260I 0.31 tolerated(0.94) benign(0.181) TCGA-AA-3510-01 3 160804336 160804336 C T B3GALNT1 Silent p.E69E 0.26 TCGA-AA-3510-01 3 164697167 164697167 C A SI Nonsense_Mutation p.E1823* 0.25 TCGA-AA-3510-01 3 164748618 164748618 C A SI Missense_Mutation p.R925I 0.09 tolerated(0.1) benign(0.015) TCGA-AA-3510-01 3 164758756 164758756 C A SI Nonsense_Mutation p.E711* 0.10 TCGA-AA-3510-01 3 164905960 164905960 G A SLITRK3 Nonsense_Mutation p.R887* 0.34 TCGA-AA-3510-01 3 164907988 164907988 G T SLITRK3 Missense_Mutation p.L211I 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 3 165547544 165547544 G A BCHE Silent p.F426F 0.18 TCGA-AA-3510-01 3 165547574 165547574 G T BCHE Silent p.A416A 0.29 TCGA-AA-3510-01 3 167272587 167272587 C T WDR49 Splice_Site p.X218_splice 0.09 TCGA-AA-3510-01 3 167728154 167728154 C T GOLIM4 Missense_Mutation p.R665H 0.35 tolerated_low_confidence(0.66) benign(0.002) TCGA-AA-3510-01 3 168810804 168810804 G A MECOM Nonsense_Mutation p.R913* 0.36 TCGA-AA-3510-01 3 170009653 170009653 G A PRKCI Silent p.R405R 0.28 TCGA-AA-3510-01 3 170185109 170185109 G A SLC7A14 Nonsense_Mutation p.R684* 0.39 TCGA-AA-3510-01 3 170624791 170624791 C A EIF5A2 Missense_Mutation p.R86I 0.34 deleterious(0) probably_damaging(0.941) TCGA-AA-3510-01 3 170727843 170727843 G T SLC2A2 Missense_Mutation p.L134M 0.35 deleterious(0) probably_damaging(0.971) TCGA-AA-3510-01 3 170802051 170802051 G A TNIK Missense_Mutation p.S1021L 0.12 deleterious(0) probably_damaging(0.98) TCGA-AA-3510-01 3 17208408 17208408 G T TBC1D5 Missense_Mutation p.L671I 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3510-01 3 17209267 17209267 G A TBC1D5 Silent p.L658L 0.25 TCGA-AA-3510-01 3 172533396 172533396 G A ECT2 Silent p.E801E 0.25 TCGA-AA-3510-01 3 172642037 172642037 G T SPATA16 Silent p.I433I 0.34 TCGA-AA-3510-01 3 172835116 172835116 G A SPATA16 Missense_Mutation p.R136C 0.32 deleterious(0.01) benign(0.063) TCGA-AA-3510-01 3 173322585 173322585 A C NLGN1 Missense_Mutation p.K66T 0.30 deleterious(0.04) probably_damaging(0.964) TCGA-AA-3510-01 3 173999291 173999291 C T NLGN1 3'UTR 0.27 TCGA-AA-3510-01 3 175521017 175521017 T G NAALADL2 3'UTR 0.50 TCGA-AA-3510-01 3 176755900 176755900 C T TBL1XR1 Missense_Mutation p.D370N 0.30 deleterious(0.04) possibly_damaging(0.663) TCGA-AA-3510-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.37 tolerated(0.06) probably_damaging(0.998) TCGA-AA-3510-01 3 179527367 179527367 T A PEX5L Missense_Mutation p.D415V 0.22 tolerated(0.05) benign(0.061) TCGA-AA-3510-01 3 179576879 179576879 C T PEX5L Missense_Mutation p.E265K 0.30 deleterious(0.01) probably_damaging(0.968) TCGA-AA-3510-01 3 180325668 180325668 C A TTC14 Intron 0.19 TCGA-AA-3510-01 3 181431309 181431309 G A SOX2 3'UTR 0.40 TCGA-AA-3510-01 3 182841828 182841828 G T LAMP3 3'UTR 0.30 TCGA-AA-3510-01 3 182947476 182947476 C A MCF2L2 Nonsense_Mutation p.E675* 0.36 TCGA-AA-3510-01 3 182989435 182989435 G T B3GNT5 3'UTR 0.32 TCGA-AA-3510-01 3 183388934 183388934 C A KLHL24 Missense_Mutation p.S446Y 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 183823965 183823965 G T HTR3E Missense_Mutation p.E351D 0.35 deleterious(0.03) probably_damaging(0.992) TCGA-AA-3510-01 3 184104637 184104637 G A CHRD Missense_Mutation p.R734Q 0.24 deleterious(0.02) benign(0.131) TCGA-AA-3510-01 3 184682319 184682319 C A VPS8 Missense_Mutation p.H1083N 0.26 tolerated(0.08) benign(0.032) TCGA-AA-3510-01 3 186331020 186331020 G A AHSG Silent p.P30P 0.26 TCGA-AA-3510-01 3 186333473 186333473 G A AHSG Splice_Site p.X72_splice 0.34 TCGA-AA-3510-01 3 186392940 186392940 G A HRG Silent p.P234P 0.26 TCGA-AA-3510-01 3 186395463 186395463 T A HRG Missense_Mutation p.S457T 0.31 tolerated(0.22) possibly_damaging(0.669) TCGA-AA-3510-01 3 186459485 186459485 G T KNG1 Nonsense_Mutation p.E434* 0.34 TCGA-AA-3510-01 3 186459887 186459887 C T KNG1 Missense_Mutation p.L568F 0.33 tolerated(0.11) benign(0.062) TCGA-AA-3510-01 3 186953694 186953694 G A MASP1 Silent p.G655G 0.37 TCGA-AA-3510-01 3 186965056 186965056 C T MASP1 Intron 0.34 TCGA-AA-3510-01 3 187443345 187443345 C T BCL6 Missense_Mutation p.R594Q 0.08 deleterious(0.01) possibly_damaging(0.58) TCGA-AA-3510-01 3 189526072 189526072 G A TP63 Silent p.T112T 0.40 TCGA-AA-3510-01 3 189584500 189584500 C T TP63 Nonsense_Mutation p.R266* 0.10 TCGA-AA-3510-01 3 189690677 189690677 C T LEPREL1 Missense_Mutation p.R562Q 0.20 deleterious(0) probably_damaging(0.99) TCGA-AA-3510-01 3 190345234 190345234 G A IL1RAP Missense_Mutation p.E300K 0.32 tolerated(0.12) benign(0.098) TCGA-AA-3510-01 3 190575589 190575589 G A GMNC Missense_Mutation p.L123F 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 3 190936617 190936617 C T OSTN Missense_Mutation p.L62F 0.33 deleterious(0.01) benign(0.063) TCGA-AA-3510-01 3 193080240 193080240 C A ATP13A5 Missense_Mutation p.D156Y 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 194061710 194061710 C T CPN2 3'UTR 0.21 TCGA-AA-3510-01 3 194118483 194118483 A C GP5 Missense_Mutation p.L177V 0.26 tolerated(0.13) possibly_damaging(0.776) TCGA-AA-3510-01 3 194159658 194159658 C T ATP13A3 Missense_Mutation p.R585Q 0.32 tolerated(0.55) benign(0.004) TCGA-AA-3510-01 3 19491696 19491696 G T KCNH8 Missense_Mutation p.D492Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 3 195063346 195063346 C T ACAP2 Missense_Mutation p.E128K 0.35 tolerated(0.14) benign(0.207) TCGA-AA-3510-01 3 195608941 195608941 G A TNK2 Missense_Mutation p.R353C 0.12 deleterious(0) probably_damaging(0.964) TCGA-AA-3510-01 3 196737634 196737634 C A MFI2 Missense_Mutation p.G422V 0.35 deleterious(0) probably_damaging(0.948) TCGA-AA-3510-01 3 197428597 197428597 C T KIAA0226 Missense_Mutation p.V237M 0.36 tolerated_low_confidence(0.31) benign(0.018) TCGA-AA-3510-01 3 197547217 197547217 C A LRCH3 Missense_Mutation p.Q186K 0.22 deleterious(0.02) benign(0.257) TCGA-AA-3510-01 3 19921203 19921203 C A EFHB Nonsense_Mutation p.E808* 0.40 TCGA-AA-3510-01 3 19975210 19975210 T G EFHB Missense_Mutation p.K101Q 0.32 deleterious_low_confidence(0.04) benign(0.232) TCGA-AA-3510-01 3 24018717 24018717 G A NR1D2 Missense_Mutation p.R516Q 0.37 deleterious(0.02) benign(0.024) TCGA-AA-3510-01 3 24231797 24231797 C T THRB Silent p.P17P 0.37 TCGA-AA-3510-01 3 25470219 25470219 G A RARB 5'UTR 0.28 TCGA-AA-3510-01 3 25678729 25678729 C A TOP2B Nonsense_Mutation p.E201* 0.29 TCGA-AA-3510-01 3 27216204 27216204 C T NEK10 Missense_Mutation p.E876K 0.44 deleterious(0.02) possibly_damaging(0.711) TCGA-AA-3510-01 3 27418203 27418203 G A SLC4A7 3'UTR 0.08 TCGA-AA-3510-01 3 28373367 28373367 G A AZI2 Intron 0.25 TCGA-AA-3510-01 3 28381915 28381915 C A AZI2 Missense_Mutation p.R65I 0.10 deleterious(0) probably_damaging(0.933) TCGA-AA-3510-01 3 32031204 32031204 C A ZNF860 Missense_Mutation p.F211L 0.22 tolerated(0.11) benign(0.312) TCGA-AA-3510-01 3 32483503 32483503 T C CMTM7 Missense_Mutation p.S111P 0.43 deleterious(0.01) possibly_damaging(0.864) TCGA-AA-3510-01 3 33093430 33093430 C T GLB1 Missense_Mutation p.E287K 0.51 tolerated(0.58) benign(0.003) TCGA-AA-3510-01 3 35785415 35785415 G A ARPP21 Missense_Mutation p.A665T 0.30 tolerated(0.38) benign(0.004) TCGA-AA-3510-01 3 35835560 35835560 G T ARPP21 3'UTR 0.26 TCGA-AA-3510-01 3 37163002 37163002 C T LRRFIP2 Missense_Mutation p.R104Q 0.09 tolerated(0.37) benign(0.025) TCGA-AA-3510-01 3 37860576 37860576 C T ITGA9 3'UTR 0.22 TCGA-AA-3510-01 3 38103775 38103775 C T DLEC1 Silent p.F263F 0.28 TCGA-AA-3510-01 3 38163936 38163936 G A DLEC1 3'UTR 0.33 TCGA-AA-3510-01 3 38645218 38645218 C T SCN5A Silent p.E625E 0.39 TCGA-AA-3510-01 3 38674804 38674804 C A SCN5A 5'UTR 0.24 TCGA-AA-3510-01 3 38739155 38739155 G A SCN10A Silent p.D1852D 0.29 TCGA-AA-3510-01 3 38888685 38888685 A C SCN11A Missense_Mutation p.F1626V 0.45 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 3 38961476 38961476 C A SCN11A Missense_Mutation p.K303N 0.43 tolerated(0.45) possibly_damaging(0.843) TCGA-AA-3510-01 3 38991597 38991597 C T SCN11A Missense_Mutation p.R86Q 0.24 tolerated(0.49) benign(0.246) TCGA-AA-3510-01 3 40204285 40204285 T G MYRIP Missense_Mutation p.F178L 0.10 tolerated(0.06) probably_damaging(0.998) TCGA-AA-3510-01 3 40456267 40456267 C A ENTPD3 Missense_Mutation p.S178Y 0.15 deleterious(0) probably_damaging(0.987) TCGA-AA-3510-01 3 40528462 40528462 A C ZNF619 Missense_Mutation p.K194T 0.15 deleterious(0.03) possibly_damaging(0.614) TCGA-AA-3510-01 3 41266472 41266472 G A CTNNB1 Missense_Mutation p.R90Q 0.35 deleterious(0.02) possibly_damaging(0.823) TCGA-AA-3510-01 3 41267291 41267291 A C CTNNB1 Missense_Mutation p.K292T 0.33 deleterious(0.02) possibly_damaging(0.579) TCGA-AA-3510-01 3 41746626 41746626 C A ULK4 Nonsense_Mutation p.E902* 0.21 TCGA-AA-3510-01 3 424339 424339 G T CHL1 Nonsense_Mutation p.E721* 0.20 TCGA-AA-3510-01 3 42576527 42576527 C T VIPR1 Silent p.F357F 0.31 TCGA-AA-3510-01 3 42661173 42661173 G A NKTR Missense_Mutation p.E87K 0.24 deleterious_low_confidence(0) unknown(0) TCGA-AA-3510-01 3 42728221 42728221 G A KLHL40 Missense_Mutation p.E371K 0.29 deleterious(0.02) benign(0.221) TCGA-AA-3510-01 3 42956695 42956695 G A ZNF662 Missense_Mutation p.R403Q 0.32 tolerated(0.93) possibly_damaging(0.844) TCGA-AA-3510-01 3 432640 432640 A C CHL1 Silent p.I863I 0.18 TCGA-AA-3510-01 3 436400 436400 A C CHL1 Missense_Mutation p.E980A 0.15 tolerated(0.24) benign(0.007) TCGA-AA-3510-01 3 43642033 43642033 T G ANO10 Missense_Mutation p.E60D 0.09 tolerated(0.47) benign(0.001) TCGA-AA-3510-01 3 44329322 44329322 C A TOPAZ1 Silent p.I1224I 0.30 TCGA-AA-3510-01 3 44402873 44402873 C A TCAIM Missense_Mutation p.S61Y 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 44540723 44540723 C T ZNF852 Missense_Mutation p.E516K 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3510-01 3 44541717 44541717 C A ZNF852 Missense_Mutation p.E184D 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-AA-3510-01 3 44612650 44612650 G T ZKSCAN7 Missense_Mutation p.R683I 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 44636026 44636026 C A ZNF660 Missense_Mutation p.S114Y 0.31 deleterious(0.02) possibly_damaging(0.546) TCGA-AA-3510-01 3 44636545 44636545 C T ZNF660 Missense_Mutation p.S287F 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3510-01 3 44636858 44636858 A T ZNF660 3'UTR 0.34 TCGA-AA-3510-01 3 44637234 44637234 A T ZNF660 3'UTR 0.36 TCGA-AA-3510-01 3 44684351 44684351 C T ZNF197 Nonsense_Mutation p.R577* 0.34 TCGA-AA-3510-01 3 447496 447496 G A CHL1 3'UTR 0.25 TCGA-AA-3510-01 3 44776190 44776190 C A ZNF501 Missense_Mutation p.L93I 0.52 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-AA-3510-01 3 44952834 44952834 T C TGM4 Silent p.L617L 0.22 TCGA-AA-3510-01 3 45030718 45030718 C T EXOSC7 Silent p.S48S 0.24 TCGA-AA-3510-01 3 45877275 45877275 G A LZTFL1 Silent p.L44L 0.31 TCGA-AA-3510-01 3 46399426 46399426 C T CCR2 Silent p.I136I 0.36 TCGA-AA-3510-01 3 4687308 4687308 C T ITPR1 Missense_Mutation p.L251F 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 3 46874447 46874447 T G PRSS42 Missense_Mutation p.K207N 0.38 deleterious(0.03) benign(0.071) TCGA-AA-3510-01 3 46904872 46904872 G T MYL3 Silent p.P3P 0.67 TCGA-AA-3510-01 3 4735184 4735184 C T ITPR1 Missense_Mutation p.S1332L 0.32 deleterious(0.01) benign(0.169) TCGA-AA-3510-01 3 4735393 4735393 C T ITPR1 Missense_Mutation p.R1402C 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3510-01 3 48200920 48200920 G A CDC25A Missense_Mutation p.R450C 0.33 deleterious(0.01) probably_damaging(1) TCGA-AA-3510-01 3 48348343 48348343 G T SPINK8 3'UTR 0.34 TCGA-AA-3510-01 3 48414291 48414291 C T FBXW12 Nonsense_Mutation p.R12* 0.31 TCGA-AA-3510-01 3 48423201 48423201 G A FBXW12 Missense_Mutation p.A333T 0.27 deleterious(0) benign(0.039) TCGA-AA-3510-01 3 4852975 4852975 G T ITPR1 Missense_Mutation p.E2418D 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3510-01 3 49227388 49227388 A C C3orf84 Intron 0.31 TCGA-AA-3510-01 3 49462402 49462402 C T NICN1 Missense_Mutation p.A194T 0.41 tolerated(0.24) benign(0.011) TCGA-AA-3510-01 3 49699166 49699166 C T BSN Silent p.Y3296Y 0.14 TCGA-AA-3510-01 3 49831253 49831253 G A CDHR4 Missense_Mutation p.A489V 0.33 tolerated(0.19) benign(0.063) TCGA-AA-3510-01 3 49846426 49846426 G A UBA7 Missense_Mutation p.S777L 0.32 tolerated(0.27) benign(0.009) TCGA-AA-3510-01 3 50005161 50005161 G A RBM6 Silent p.S101S 0.26 TCGA-AA-3510-01 3 50357378 50357378 G A HYAL2 Silent p.F181F 0.35 TCGA-AA-3510-01 3 50471845 50471845 G A CACNA2D2 Missense_Mutation p.R102W 0.25 deleterious(0) probably_damaging(0.964) TCGA-AA-3510-01 3 51429446 51429446 C T RBM15B Silent p.L206L 0.32 TCGA-AA-3510-01 3 51431672 51431672 T G RBM15B 3'UTR 0.30 TCGA-AA-3510-01 3 52381849 52381849 G T DNAH1 Missense_Mutation p.K655N 0.31 benign(0.015) TCGA-AA-3510-01 3 52404168 52404168 G A DNAH1 Missense_Mutation p.A2061T 0.24 benign(0) TCGA-AA-3510-01 3 52425028 52425028 C A DNAH1 Missense_Mutation p.F3233L 0.33 benign(0.023) TCGA-AA-3510-01 3 52550753 52550753 G A STAB1 Silent p.A1444A 0.08 TCGA-AA-3510-01 3 52554296 52554296 G A STAB1 Missense_Mutation p.R1830Q 0.33 tolerated(0.08) benign(0.087) TCGA-AA-3510-01 3 52723217 52723217 A C GNL3 Missense_Mutation p.K179T 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 3 52740708 52740708 C A SPCS1 Missense_Mutation p.L96I 0.29 tolerated(0.14) benign(0.029) TCGA-AA-3510-01 3 52821972 52821972 G A ITIH1 Intron 0.21 TCGA-AA-3510-01 3 53851899 53851899 C T CHDH Missense_Mutation p.A564T 0.43 deleterious(0) probably_damaging(0.983) TCGA-AA-3510-01 3 53908261 53908261 C A ACTR8 Nonsense_Mutation p.E348* 0.41 TCGA-AA-3510-01 3 54676236 54676236 A C CACNA2D3 Missense_Mutation p.I379L 0.31 tolerated(0.06) benign(0.033) TCGA-AA-3510-01 3 54871252 54871252 G A CACNA2D3 Missense_Mutation p.E489K 0.10 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 3 54880495 54880495 G A CACNA2D3 Splice_Site p.X542_splice 0.08 TCGA-AA-3510-01 3 55107860 55107860 G A CACNA2D3 Missense_Mutation p.E1053K 0.45 tolerated(0.19) benign(0.058) TCGA-AA-3510-01 3 56809089 56809089 A C ARHGEF3 Intron 0.32 TCGA-AA-3510-01 3 57274544 57274544 T C APPL1 Missense_Mutation p.F113L 0.31 tolerated(0.71) benign(0.088) TCGA-AA-3510-01 3 57282340 57282340 G A APPL1 Missense_Mutation p.R275Q 0.24 deleterious(0.02) benign(0.076) TCGA-AA-3510-01 3 57311795 57311795 T C ASB14 Missense_Mutation p.T529A 0.29 tolerated(0.33) benign(0.005) TCGA-AA-3510-01 3 57343268 57343268 G A DNAH12 Silent p.F419F 0.23 TCGA-AA-3510-01 3 57431801 57431801 T G DNAH12 Missense_Mutation p.N1356T 0.35 deleterious(0) possibly_damaging(0.728) TCGA-AA-3510-01 3 57431827 57431827 C T DNAH12 Silent p.P1347P 0.36 TCGA-AA-3510-01 3 57438668 57438668 G A DNAH12 Missense_Mutation p.R1207C 0.22 tolerated(0.14) possibly_damaging(0.689) TCGA-AA-3510-01 3 57817203 57817203 C A SLMAP Missense_Mutation p.L98I 0.18 tolerated(0.08) benign(0.139) TCGA-AA-3510-01 3 58191288 58191288 C A DNASE1L3 Splice_Site p.X77_splice 0.39 TCGA-AA-3510-01 3 59737931 59737931 G A FHIT 3'UTR 0.35 TCGA-AA-3510-01 3 62189577 62189577 G A PTPRG Missense_Mutation p.R703H 0.33 tolerated(0.06) benign(0.186) TCGA-AA-3510-01 3 65456084 65456084 G A MAGI1 Missense_Mutation p.A278V 0.16 tolerated(0.24) benign(0.008) TCGA-AA-3510-01 3 67054144 67054144 G T KBTBD8 Missense_Mutation p.E251D 0.22 tolerated(0.42) benign(0.158) TCGA-AA-3510-01 3 69113221 69113221 C T UBA3 Missense_Mutation p.R157Q 0.27 tolerated(0.23) benign(0.441) TCGA-AA-3510-01 3 73111092 73111092 T C EBLN2 5'UTR 0.15 TCGA-AA-3510-01 3 75832474 75832474 C A ZNF717 Nonsense_Mutation p.E14* 0.36 TCGA-AA-3510-01 3 77089886 77089886 C T ROBO2 Intron 0.34 TCGA-AA-3510-01 3 77623815 77623815 C T ROBO2 Missense_Mutation p.R729W 0.08 deleterious(0) probably_damaging(0.962) TCGA-AA-3510-01 3 87299072 87299072 A C CHMP2B Missense_Mutation p.Q123H 0.10 deleterious(0.03) possibly_damaging(0.606) TCGA-AA-3510-01 3 88041877 88041877 C A HTR1F 3'UTR 0.30 TCGA-AA-3510-01 3 88042227 88042227 T G HTR1F 3'UTR 0.27 TCGA-AA-3510-01 3 88105120 88105120 G A CGGBP1 Nonsense_Mutation p.R3* 0.36 TCGA-AA-3510-01 3 88189649 88189649 G A ZNF654 Missense_Mutation p.E397K 0.36 deleterious(0.03) benign(0.011) TCGA-AA-3510-01 3 88189922 88189922 G T ZNF654 Nonsense_Mutation p.E488* 0.20 TCGA-AA-3510-01 3 89391205 89391205 A G EPHA3 Missense_Mutation p.Q424R 0.28 tolerated(0.25) benign(0.202) TCGA-AA-3510-01 3 93617394 93617394 C T PROS1 Silent p.E249E 0.26 TCGA-AA-3510-01 3 93646115 93646115 G T PROS1 Silent p.V71V 0.33 TCGA-AA-3510-01 3 98251189 98251189 C A GPR15 Missense_Mutation p.F104L 0.35 tolerated(0.33) benign(0.198) TCGA-AA-3510-01 3 98251792 98251792 C T GPR15 Silent p.F305F 0.36 TCGA-AA-3510-01 3 99514797 99514797 C A COL8A1 Silent p.P684P 0.37 TCGA-AA-3510-01 3 99897238 99897238 T G CMSS1 3'UTR 0.30 TCGA-AA-3510-01 4 100463213 100463213 G T C4orf17 Nonsense_Mutation p.E343* 0.24 TCGA-AA-3510-01 4 102791708 102791708 C T BANK1 Silent p.I270I 0.41 TCGA-AA-3510-01 4 103522084 103522084 C T NFKB1 Missense_Mutation p.S557F 0.24 deleterious(0.03) benign(0.269) TCGA-AA-3510-01 4 103988745 103988745 G A SLC9B2 5'UTR 0.28 TCGA-AA-3510-01 4 104068801 104068801 G A CENPE Silent p.I1282I 0.29 TCGA-AA-3510-01 4 104117402 104117402 G T CENPE Silent p.V52V 0.09 TCGA-AA-3510-01 4 10445426 10445426 G A ZNF518B Silent p.L843L 0.37 TCGA-AA-3510-01 4 106159580 106159580 C A TET2 Intron 0.11 TCGA-AA-3510-01 4 106193889 106193889 C T TET2 Missense_Mutation p.R1451W 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 4 106473973 106473973 G T ARHGEF38 Missense_Mutation p.K17N 0.29 tolerated_low_confidence(0.11) benign(0.008) TCGA-AA-3510-01 4 106861330 106861330 G A NPNT Missense_Mutation p.D232N 0.51 deleterious(0) benign(0.029) TCGA-AA-3510-01 4 107248643 107248643 C T AIMP1 Nonsense_Mutation p.R73* 0.32 TCGA-AA-3510-01 4 108615063 108615063 C T PAPSS1 Missense_Mutation p.R92H 0.33 deleterious(0.01) possibly_damaging(0.626) TCGA-AA-3510-01 4 108999428 108999428 G A LEF1 Missense_Mutation p.A319V 0.07 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 4 108999459 108999459 A G LEF1 Missense_Mutation p.Y309H 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 4 109669164 109669164 A C ETNPPL Missense_Mutation p.I360S 0.31 deleterious(0) possibly_damaging(0.673) TCGA-AA-3510-01 4 109680984 109680984 C A ETNPPL Missense_Mutation p.D86Y 0.25 deleterious(0) probably_damaging(0.983) TCGA-AA-3510-01 4 109681444 109681444 G T ETNPPL Missense_Mutation p.F25L 0.15 tolerated(0.13) benign(0.106) TCGA-AA-3510-01 4 109745160 109745160 G A COL25A1 Intron 0.31 TCGA-AA-3510-01 4 110663746 110663746 C T CFI Missense_Mutation p.E479K 0.31 tolerated(0.98) benign(0.002) TCGA-AA-3510-01 4 110667384 110667384 C A CFI Nonsense_Mutation p.E475* 0.36 TCGA-AA-3510-01 4 110682704 110682704 G A CFI Silent p.F209F 0.32 TCGA-AA-3510-01 4 111397980 111397980 G A ENPEP Missense_Mutation p.R137Q 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-AA-3510-01 4 114277462 114277462 C T ANK2 Missense_Mutation p.A2563V 0.08 probably_damaging(0.999) TCGA-AA-3510-01 4 114824382 114824382 C T ARSJ Missense_Mutation p.R283Q 0.41 tolerated(0.12) benign(0.305) TCGA-AA-3510-01 4 114824392 114824392 C T ARSJ Missense_Mutation p.E280K 0.36 tolerated(0.8) benign(0.227) TCGA-AA-3510-01 4 118005347 118005347 G A TRAM1L1 3'UTR 0.29 TCGA-AA-3510-01 4 119064721 119064721 G T NDST3 Missense_Mutation p.R474I 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 4 119951679 119951679 C T SYNPO2 Silent p.V583V 0.42 TCGA-AA-3510-01 4 119952980 119952980 C T SYNPO2 Missense_Mutation p.T1017M 0.09 tolerated(0.13) benign(0.146) TCGA-AA-3510-01 4 119953149 119953149 G T SYNPO2 Missense_Mutation p.K1073N 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 4 119958413 119958413 T G SYNPO2 Intron 0.45 TCGA-AA-3510-01 4 120463729 120463729 C T PDE5A Missense_Mutation p.R486Q 0.22 tolerated(0.14) benign(0.114) TCGA-AA-3510-01 4 120981442 120981442 G T MAD2L1 Nonsense_Mutation p.S150* 0.35 TCGA-AA-3510-01 4 121675773 121675773 G A PRDM5 Missense_Mutation p.P520S 0.24 tolerated(0.2) benign(0.345) TCGA-AA-3510-01 4 121958329 121958329 C T NDNF Missense_Mutation p.R266H 0.25 tolerated(0.54) possibly_damaging(0.73) TCGA-AA-3510-01 4 123128325 123128325 C T KIAA1109 Missense_Mutation p.T520M 0.34 benign(0.005) TCGA-AA-3510-01 4 123132132 123132132 G A KIAA1109 Missense_Mutation p.R710H 0.16 possibly_damaging(0.694) TCGA-AA-3510-01 4 123276965 123276965 C T KIAA1109 Missense_Mutation p.R4774C 0.27 probably_damaging(0.998) TCGA-AA-3510-01 4 123317487 123317487 T A ADAD1 Missense_Mutation p.Y227N 0.13 deleterious(0.01) possibly_damaging(0.495) TCGA-AA-3510-01 4 123813627 123813627 G T FGF2 3'UTR 0.45 TCGA-AA-3510-01 4 124322758 124322758 A C SPRY1 Missense_Mutation p.Q4H 0.19 tolerated(0.11) benign(0.235) TCGA-AA-3510-01 4 126239616 126239616 G T FAT4 Missense_Mutation p.D684Y 0.35 probably_damaging(0.999) TCGA-AA-3510-01 4 126239692 126239692 C T FAT4 Missense_Mutation p.T709I 0.29 possibly_damaging(0.597) TCGA-AA-3510-01 4 126240760 126240760 G A FAT4 Missense_Mutation p.R1065K 0.30 possibly_damaging(0.566) TCGA-AA-3510-01 4 126373350 126373350 A G FAT4 Missense_Mutation p.T3727A 0.26 benign(0.015) TCGA-AA-3510-01 4 126412616 126412616 A G FAT4 Missense_Mutation p.D4880G 0.29 probably_damaging(0.995) TCGA-AA-3510-01 4 128807143 128807143 C T PLK4 Silent p.I206I 0.31 TCGA-AA-3510-01 4 128930278 128930278 G A C4orf29 Missense_Mutation p.R125Q 0.35 deleterious(0.03) possibly_damaging(0.754) TCGA-AA-3510-01 4 129793187 129793187 G A JADE1 Missense_Mutation p.D767N 0.23 deleterious(0.02) benign(0.014) TCGA-AA-3510-01 4 13584332 13584332 A G BOD1L1 Missense_Mutation p.L2821S 0.33 benign(0.025) TCGA-AA-3510-01 4 140187935 140187935 T G MGARP Missense_Mutation p.N181H 0.34 tolerated(0.12) possibly_damaging(0.655) TCGA-AA-3510-01 4 140641424 140641424 G A MAML3 Nonsense_Mutation p.R824* 0.30 TCGA-AA-3510-01 4 141321545 141321545 G T CLGN Missense_Mutation p.F220L 0.30 tolerated(0.22) benign(0.013) TCGA-AA-3510-01 4 141888889 141888889 G A RNF150 Missense_Mutation p.S208L 0.31 deleterious(0) possibly_damaging(0.889) TCGA-AA-3510-01 4 144474466 144474466 G A SMARCA5 3'UTR 0.20 TCGA-AA-3510-01 4 144797984 144797984 G A GYPE Missense_Mutation p.A54V 0.31 tolerated_low_confidence(0.18) possibly_damaging(0.695) TCGA-AA-3510-01 4 146044182 146044182 C T ABCE1 Missense_Mutation p.R425C 0.12 deleterious(0) probably_damaging(0.956) TCGA-AA-3510-01 4 146058661 146058661 C T OTUD4 Missense_Mutation p.R1024Q 0.32 deleterious(0.01) unknown(0) TCGA-AA-3510-01 4 147214122 147214122 G A SLC10A7 Silent p.I244I 0.35 TCGA-AA-3510-01 4 148559740 148559740 T G PRMT10 Missense_Mutation p.E827D 0.11 tolerated(0.15) possibly_damaging(0.533) TCGA-AA-3510-01 4 148594798 148594798 C T PRMT10 Missense_Mutation p.G189E 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 4 151153866 151153866 G A DCLK2 Silent p.S501S 0.30 TCGA-AA-3510-01 4 151242369 151242369 G A LRBA Missense_Mutation p.A2546V 0.33 tolerated(0.07) probably_damaging(0.994) TCGA-AA-3510-01 4 151356803 151356803 G A LRBA Nonsense_Mutation p.R2338* 0.27 TCGA-AA-3510-01 4 152054264 152054264 G A SH3D19 Nonsense_Mutation p.R614* 0.07 TCGA-AA-3510-01 4 152570833 152570833 C T FAM160A1 Missense_Mutation p.S547L 0.36 tolerated(0.27) benign(0) TCGA-AA-3510-01 4 152577412 152577412 G A FAM160A1 Silent p.K860K 0.31 TCGA-AA-3510-01 4 15341711 15341711 C T C1QTNF7 5'UTR 0.51 TCGA-AA-3510-01 4 15341762 15341762 C A C1QTNF7 5'UTR 0.30 TCGA-AA-3510-01 4 154279643 154279643 G T MND1 Nonsense_Mutation p.E49* 0.37 TCGA-AA-3510-01 4 154636777 154636777 G A RNF175 Missense_Mutation p.S223L 0.25 deleterious(0.04) benign(0.222) TCGA-AA-3510-01 4 155156406 155156406 G A DCHS2 Missense_Mutation p.S2678L 0.40 deleterious(0.01) possibly_damaging(0.683) TCGA-AA-3510-01 4 155157992 155157992 G T DCHS2 Missense_Mutation p.F2149L 0.22 tolerated(0.51) benign(0.015) TCGA-AA-3510-01 4 155219215 155219215 A C DCHS2 Missense_Mutation p.F1629C 0.08 deleterious(0) probably_damaging(0.969) TCGA-AA-3510-01 4 155241931 155241931 A G DCHS2 Silent p.S1085S 0.28 TCGA-AA-3510-01 4 155244399 155244399 G A DCHS2 Intron 0.35 TCGA-AA-3510-01 4 155244409 155244409 G A DCHS2 Intron 0.23 TCGA-AA-3510-01 4 155312429 155312429 C T DCHS2 Silent p.T7T 0.43 TCGA-AA-3510-01 4 15542494 15542494 C T CC2D2A Missense_Mutation p.R680C 0.43 tolerated(0.12) benign(0.06) TCGA-AA-3510-01 4 155468977 155468977 G A PLRG1 Missense_Mutation p.R49C 0.22 deleterious(0) possibly_damaging(0.591) TCGA-AA-3510-01 4 155507950 155507950 C A FGA Missense_Mutation p.D211Y 0.32 deleterious(0) possibly_damaging(0.799) TCGA-AA-3510-01 4 155533543 155533543 G A FGG Silent p.F41F 0.23 TCGA-AA-3510-01 4 156136792 156136792 G A NPY2R 3'UTR 0.14 TCGA-AA-3510-01 4 156276982 156276982 C T MAP9 Silent p.S392S 0.37 TCGA-AA-3510-01 4 156757949 156757949 G T ASIC5 Missense_Mutation p.S376Y 0.38 deleterious(0) possibly_damaging(0.796) TCGA-AA-3510-01 4 156764843 156764843 C T ASIC5 Missense_Mutation p.R284H 0.27 tolerated(0.1) benign(0.223) TCGA-AA-3510-01 4 156784700 156784700 G A ASIC5 Missense_Mutation p.R83C 0.19 deleterious(0.03) benign(0.301) TCGA-AA-3510-01 4 156841014 156841014 T G TDO2 Missense_Mutation p.L365V 0.37 deleterious(0) possibly_damaging(0.73) TCGA-AA-3510-01 4 15690060 15690060 T G FAM200B Missense_Mutation p.F487C 0.33 deleterious(0) possibly_damaging(0.794) TCGA-AA-3510-01 4 15690349 15690349 T G FAM200B Missense_Mutation p.F583L 0.25 deleterious(0) probably_damaging(0.979) TCGA-AA-3510-01 4 15692043 15692043 A G FAM200B 3'Flank 0.46 TCGA-AA-3510-01 4 157999151 157999151 G A GLRB 5'UTR 0.28 TCGA-AA-3510-01 4 15842113 15842113 C T CD38 Missense_Mutation p.S264L 0.26 tolerated(0.62) benign(0.009) TCGA-AA-3510-01 4 159091863 159091863 C T FAM198B Missense_Mutation p.R222Q 0.12 tolerated(0.59) benign(0) TCGA-AA-3510-01 4 159627377 159627377 A G ETFDH Missense_Mutation p.N441S 0.13 tolerated(0.51) benign(0) TCGA-AA-3510-01 4 159631979 159631979 T G PPID Missense_Mutation p.N306H 0.34 tolerated(0.1) benign(0.439) TCGA-AA-3510-01 4 164393846 164393846 C A TKTL2 Missense_Mutation p.M347I 0.37 deleterious(0) benign(0.001) TCGA-AA-3510-01 4 164394012 164394012 G A TKTL2 Missense_Mutation p.S292L 0.26 tolerated(0.27) benign(0.001) TCGA-AA-3510-01 4 16504112 16504112 G T LDB2 3'UTR 0.28 TCGA-AA-3510-01 4 165962379 165962379 C A TRIM60 Missense_Mutation p.F385L 0.42 tolerated(1) benign(0.01) TCGA-AA-3510-01 4 166261542 166261542 C A MSMO1 Intron 0.45 TCGA-AA-3510-01 4 169815917 169815917 C A PALLD Intron 0.38 TCGA-AA-3510-01 4 1701316 1701316 C T SLBP Missense_Mutation p.D152N 0.31 deleterious(0) benign(0.207) TCGA-AA-3510-01 4 175238547 175238547 G T CEP44 Intron 0.28 TCGA-AA-3510-01 4 175899169 175899169 T C ADAM29 3'UTR 0.43 TCGA-AA-3510-01 4 177071648 177071648 C T WDR17 Silent p.N760N 0.37 TCGA-AA-3510-01 4 177098780 177098780 C A WDR17 Missense_Mutation p.S1275Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 4 177138071 177138071 C A ASB5 Nonsense_Mutation p.E254* 0.27 TCGA-AA-3510-01 4 177608564 177608564 T C VEGFC Missense_Mutation p.K308E 0.36 tolerated(0.18) possibly_damaging(0.547) TCGA-AA-3510-01 4 178256851 178256851 C T NEIL3 Silent p.F96F 0.31 TCGA-AA-3510-01 4 17826648 17826648 G A NCAPG Missense_Mutation p.D481N 0.41 tolerated(0.11) benign(0.021) TCGA-AA-3510-01 4 184577047 184577047 G T RWDD4 Missense_Mutation p.S31Y 0.32 deleterious(0.01) probably_damaging(0.917) TCGA-AA-3510-01 4 185578248 185578248 G T PRIMPOL 5'UTR 0.35 TCGA-AA-3510-01 4 185593505 185593505 G A PRIMPOL Silent p.S245S 0.30 TCGA-AA-3510-01 4 185652093 185652093 C A CENPU Missense_Mutation p.R26I 0.07 deleterious(0) possibly_damaging(0.907) TCGA-AA-3510-01 4 186336373 186336373 T G UFSP2 Missense_Mutation p.K207T 0.33 tolerated(0.51) benign(0.001) TCGA-AA-3510-01 4 186381223 186381223 C A CCDC110 Missense_Mutation p.R173I 0.21 deleterious(0.01) possibly_damaging(0.462) TCGA-AA-3510-01 4 186544436 186544436 G A SORBS2 Missense_Mutation p.S812L 0.55 tolerated(0.3) benign(0.006) TCGA-AA-3510-01 4 187201170 187201170 C A F11 Missense_Mutation p.L254I 0.18 deleterious(0.05) probably_damaging(0.937) TCGA-AA-3510-01 4 187549917 187549917 C T FAT1 Missense_Mutation p.V1442I 0.28 benign(0.029) TCGA-AA-3510-01 4 189013026 189013026 C A TRIML2 Missense_Mutation p.R222I 0.24 deleterious(0) possibly_damaging(0.484) TCGA-AA-3510-01 4 2073817 2073817 C A POLN 3'UTR 0.30 TCGA-AA-3510-01 4 2132970 2132970 C A POLN Missense_Mutation p.K593N 0.37 deleterious(0.01) benign(0.21) TCGA-AA-3510-01 4 2241898 2241898 C T HAUS3 Missense_Mutation p.R259Q 0.32 tolerated(0.31) benign(0.022) TCGA-AA-3510-01 4 247864 247864 G A ZNF876P RNA 0.24 TCGA-AA-3510-01 4 248195 248195 G T ZNF876P RNA 0.47 TCGA-AA-3510-01 4 25125520 25125520 C A SEPSECS 3'UTR 0.35 TCGA-AA-3510-01 4 25677972 25677972 C T SLC34A2 Silent p.V558V 0.34 TCGA-AA-3510-01 4 25930862 25930862 C T SMIM20 3'UTR 0.39 TCGA-AA-3510-01 4 265317 265317 C A ZNF732 Missense_Mutation p.E443D 0.24 deleterious(0.04) benign(0.001) TCGA-AA-3510-01 4 265837 265837 C A ZNF732 Missense_Mutation p.R270I 0.39 tolerated(0.47) possibly_damaging(0.905) TCGA-AA-3510-01 4 266396 266396 C A ZNF732 Missense_Mutation p.D84Y 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-AA-3510-01 4 289899 289899 C A ZNF732 Nonsense_Mutation p.E17* 0.33 TCGA-AA-3510-01 4 2965729 2965729 T C GRK4 5'UTR 0.33 TCGA-AA-3510-01 4 3021546 3021546 G T GRK4 Missense_Mutation p.R307I 0.23 deleterious(0.01) probably_damaging(0.963) TCGA-AA-3510-01 4 3024156 3024156 G T GRK4 Missense_Mutation p.E316D 0.30 deleterious(0.01) benign(0.324) TCGA-AA-3510-01 4 30921782 30921782 G A PCDH7 Missense_Mutation p.R1061H 0.36 tolerated(0.06) benign(0.023) TCGA-AA-3510-01 4 3318204 3318204 G A RGS12 Missense_Mutation p.E103K 0.21 deleterious(0.03) benign(0.298) TCGA-AA-3510-01 4 3446591 3446591 G T HGFAC Missense_Mutation p.G296V 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 4 3451116 3451116 G A HGFAC Silent p.R646R 0.35 TCGA-AA-3510-01 4 36122810 36122810 T G ARAP2 Missense_Mutation p.E1295D 0.12 tolerated(0.26) benign(0.003) TCGA-AA-3510-01 4 36189182 36189182 C T ARAP2 Silent p.S523S 0.08 TCGA-AA-3510-01 4 36283629 36283629 G T DTHD1 5'Flank 0.44 TCGA-AA-3510-01 4 36283643 36283643 C T DTHD1 5'Flank 0.33 TCGA-AA-3510-01 4 36340739 36340739 G T DTHD1 Missense_Mutation p.K657N 0.25 deleterious(0.05) benign(0.159) TCGA-AA-3510-01 4 367554 367554 A G ZNF141 Missense_Mutation p.K443R 0.26 tolerated(0.95) benign(0.399) TCGA-AA-3510-01 4 37446088 37446088 C A KIAA1239 Silent p.I826I 0.34 TCGA-AA-3510-01 4 37448023 37448023 G T KIAA1239 Missense_Mutation p.K1471N 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 4 37857285 37857285 C T PGM2 Silent p.G553G 0.25 TCGA-AA-3510-01 4 38799482 38799482 G A TLR1 Missense_Mutation p.S324L 0.10 deleterious(0) possibly_damaging(0.755) TCGA-AA-3510-01 4 38828569 38828569 G T TLR6 3'UTR 0.44 TCGA-AA-3510-01 4 38988013 38988013 G A TMEM156 Missense_Mutation p.L256F 0.42 tolerated(0.06) possibly_damaging(0.453) TCGA-AA-3510-01 4 39098318 39098318 G A KLHL5 Missense_Mutation p.A420T 0.32 deleterious(0.04) possibly_damaging(0.842) TCGA-AA-3510-01 4 39329279 39329279 C A RFC1 Missense_Mutation p.K143N 0.37 deleterious(0.02) possibly_damaging(0.881) TCGA-AA-3510-01 4 39450091 39450091 T C KLB Missense_Mutation p.S974P 0.31 tolerated(0.71) benign(0.001) TCGA-AA-3510-01 4 39553693 39553693 C T SMIM14 3'UTR 0.27 TCGA-AA-3510-01 4 40103771 40103771 C T N4BP2 Silent p.F102F 0.34 TCGA-AA-3510-01 4 40818228 40818228 G A APBB2 Nonsense_Mutation p.R721* 0.37 TCGA-AA-3510-01 4 41015997 41015997 C T APBB2 Silent p.S146S 0.33 TCGA-AA-3510-01 4 41648255 41648255 G A LIMCH1 Missense_Mutation p.R405Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 4 41694357 41694357 G A LIMCH1 Missense_Mutation p.R1061Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 4 41986058 41986058 A C DCAF4L1 3'UTR 0.23 TCGA-AA-3510-01 4 4207848 4207848 G T OTOP1 Missense_Mutation p.L184I 0.43 deleterious(0.04) probably_damaging(0.933) TCGA-AA-3510-01 4 436526 436526 C A ZNF721 Missense_Mutation p.R577I 0.38 tolerated(0.16) possibly_damaging(0.615) TCGA-AA-3510-01 4 436610 436610 C A ZNF721 Missense_Mutation p.R549I 0.34 tolerated(0.15) possibly_damaging(0.829) TCGA-AA-3510-01 4 47559850 47559850 G A ATP10D Missense_Mutation p.R665Q 0.14 tolerated(0.1) probably_damaging(0.934) TCGA-AA-3510-01 4 47864910 47864910 T G NFXL1 Missense_Mutation p.N757H 0.11 tolerated(0.12) benign(0.002) TCGA-AA-3510-01 4 48564943 48564943 G A FRYL Missense_Mutation p.S1220F 0.30 deleterious(0.02) benign(0.389) TCGA-AA-3510-01 4 52860896 52860896 C T LRRC66 Silent p.G764G 0.38 TCGA-AA-3510-01 4 53346 53346 T G ZNF595 5'UTR 0.13 TCGA-AA-3510-01 4 53525314 53525314 T G USP46 Missense_Mutation p.T2P 0.12 tolerated_low_confidence(0.27) benign(0.002) TCGA-AA-3510-01 4 54265967 54265967 C T FIP1L1 Missense_Mutation p.S259F 0.35 deleterious(0) probably_damaging(0.979) TCGA-AA-3510-01 4 54967832 54967832 G A GSX2 Missense_Mutation p.E220K 0.21 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 4 55155183 55155183 A T PDGFRA Missense_Mutation p.I928F 0.13 deleterious(0) benign(0.073) TCGA-AA-3510-01 4 5617202 5617202 C T EVC2 Missense_Mutation p.E926K 0.34 tolerated(0.13) benign(0.103) TCGA-AA-3510-01 4 56291688 56291688 A C TMEM165 3'UTR 0.22 TCGA-AA-3510-01 4 56830473 56830473 T C CEP135 Missense_Mutation p.S245P 0.08 tolerated(0.07) probably_damaging(0.943) TCGA-AA-3510-01 4 5755655 5755655 C A EVC Missense_Mutation p.L487I 0.27 tolerated(0.33) benign(0.102) TCGA-AA-3510-01 4 57871510 57871510 G T POLR2B Missense_Mutation p.E333D 0.29 tolerated(0.34) benign(0.047) TCGA-AA-3510-01 4 62362956 62362956 T G LPHN3 5'UTR 0.12 TCGA-AA-3510-01 4 62813990 62813990 T G LPHN3 Missense_Mutation p.V866G 0.36 tolerated(0.18) possibly_damaging(0.644) TCGA-AA-3510-01 4 65145809 65145809 A G TECRL Missense_Mutation p.M358T 0.26 deleterious(0) benign(0.165) TCGA-AA-3510-01 4 66197796 66197796 C A EPHA5 Missense_Mutation p.R968I 0.30 tolerated(0.22) possibly_damaging(0.69) TCGA-AA-3510-01 4 6698726 6698726 C T S100P Missense_Mutation p.T82M 0.26 deleterious(0.01) possibly_damaging(0.73) TCGA-AA-3510-01 4 68378171 68378171 G A CENPC Nonsense_Mutation p.R521* 0.36 TCGA-AA-3510-01 4 68472229 68472229 A C STAP1 3'UTR 0.23 TCGA-AA-3510-01 4 68534357 68534357 A G UBA6 Silent p.H235H 0.28 TCGA-AA-3510-01 4 68693101 68693101 C A TMPRSS11D Missense_Mutation p.R277I 0.22 deleterious(0) benign(0.124) TCGA-AA-3510-01 4 68725333 68725333 G A TMPRSS11D Silent p.V24V 0.36 TCGA-AA-3510-01 4 68919575 68919575 C T TMPRSS11F 3'UTR 0.23 TCGA-AA-3510-01 4 69426325 69426325 G A UGT2B17 Missense_Mutation p.S312L 0.13 deleterious(0) probably_damaging(0.981) TCGA-AA-3510-01 4 69528796 69528796 G A UGT2B15 Missense_Mutation p.S312L 0.18 deleterious(0) probably_damaging(0.911) TCGA-AA-3510-01 4 69533852 69533852 C T UGT2B15 Missense_Mutation p.R260Q 0.29 deleterious(0.03) possibly_damaging(0.474) TCGA-AA-3510-01 4 70346495 70346495 C T UGT2B4 Missense_Mutation p.D482N 0.41 tolerated(0.51) benign(0.05) TCGA-AA-3510-01 4 7043369 7043369 G A CCDC96 Missense_Mutation p.R433C 0.28 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 4 70720005 70720005 G T SULT1E1 Missense_Mutation p.S100Y 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3510-01 4 70721061 70721061 G A SULT1E1 Nonsense_Mutation p.R77* 0.29 TCGA-AA-3510-01 4 70721110 70721110 G A SULT1E1 Silent p.I60I 0.42 TCGA-AA-3510-01 4 71201467 71201467 G T CABS1 Missense_Mutation p.E237D 0.38 deleterious(0.04) possibly_damaging(0.866) TCGA-AA-3510-01 4 71509043 71509043 G T ENAM Nonsense_Mutation p.E634* 0.31 TCGA-AA-3510-01 4 71522210 71522210 C A IGJ Missense_Mutation p.V106F 0.26 tolerated(0.48) benign(0.054) TCGA-AA-3510-01 4 71555168 71555168 C A UTP3 Silent p.P258P 0.36 TCGA-AA-3510-01 4 72204946 72204946 T G SLC4A4 Intron 0.35 TCGA-AA-3510-01 4 72316972 72316972 G A SLC4A4 Missense_Mutation p.G426R 0.29 tolerated(0.43) possibly_damaging(0.88) TCGA-AA-3510-01 4 72423507 72423507 C T SLC4A4 Missense_Mutation p.R948C 0.26 deleterious(0.01) possibly_damaging(0.479) TCGA-AA-3510-01 4 728209 728209 A C PCGF3 Intron 0.21 TCGA-AA-3510-01 4 74281975 74281975 C T ALB Silent p.F398F 0.36 TCGA-AA-3510-01 4 74315821 74315821 G T AFP Missense_Mutation p.Q420H 0.28 deleterious(0.05) probably_damaging(0.941) TCGA-AA-3510-01 4 74853305 74853305 T G PPBP Silent p.G71G 0.37 TCGA-AA-3510-01 4 75174255 75174255 C T EPGN Missense_Mutation p.A2V 0.27 deleterious(0) probably_damaging(0.958) TCGA-AA-3510-01 4 76587212 76587212 C A G3BP2 5'UTR 0.32 TCGA-AA-3510-01 4 76897116 76897116 C A SDAD1 Missense_Mutation p.K146N 0.08 deleterious(0) possibly_damaging(0.566) TCGA-AA-3510-01 4 77057346 77057346 C T NUP54 Missense_Mutation p.R172Q 0.32 deleterious(0.01) probably_damaging(0.947) TCGA-AA-3510-01 4 77177349 77177349 G T FAM47E Missense_Mutation p.K31N 0.13 tolerated(0.16) possibly_damaging(0.576) TCGA-AA-3510-01 4 77189901 77189901 C T FAM47E Missense_Mutation p.R217C 0.13 tolerated(0.07) possibly_damaging(0.642) TCGA-AA-3510-01 4 77244560 77244560 A C CCDC158 Missense_Mutation p.S1054A 0.12 tolerated(0.45) benign(0.001) TCGA-AA-3510-01 4 77283469 77283469 C A CCDC158 Splice_Site p.X611_splice 0.22 TCGA-AA-3510-01 4 77288485 77288485 C A CCDC158 Nonsense_Mutation p.E598* 0.37 TCGA-AA-3510-01 4 78678019 78678019 C T CNOT6L Missense_Mutation p.A163T 0.41 tolerated(0.28) benign(0.027) TCGA-AA-3510-01 4 79236860 79236860 C A FRAS1 Nonsense_Mutation p.Y597* 0.33 TCGA-AA-3510-01 4 79440623 79440623 C A FRAS1 Missense_Mutation p.L3510I 0.35 possibly_damaging(0.78) TCGA-AA-3510-01 4 80327662 80327662 T C GK2 3'UTR 0.37 TCGA-AA-3510-01 4 81791162 81791162 C T C4orf22 Missense_Mutation p.R134C 0.29 deleterious(0.02) probably_damaging(0.977) TCGA-AA-3510-01 4 82378706 82378706 C T RASGEF1B Missense_Mutation p.V83I 0.33 tolerated(0.14) possibly_damaging(0.466) TCGA-AA-3510-01 4 8305989 8305989 G A HTRA3 Silent p.P393P 0.24 TCGA-AA-3510-01 4 83276503 83276503 C T HNRNPD Missense_Mutation p.S351N 0.29 tolerated(1) probably_damaging(0.914) TCGA-AA-3510-01 4 83770082 83770082 G A SEC31A Missense_Mutation p.P793S 0.30 tolerated(0.79) benign(0.002) TCGA-AA-3510-01 4 83840086 83840086 A C THAP9 3'UTR 0.13 TCGA-AA-3510-01 4 84361025 84361025 A C HELQ Missense_Mutation p.F600C 0.05 deleterious(0.01) benign(0.017) TCGA-AA-3510-01 4 84368090 84368090 C A HELQ Missense_Mutation p.K430N 0.11 deleterious(0.02) possibly_damaging(0.519) TCGA-AA-3510-01 4 84518018 84518018 G T AGPAT9 Nonsense_Mutation p.E288* 0.33 TCGA-AA-3510-01 4 86916359 86916359 G T ARHGAP24 Nonsense_Mutation p.E518* 0.37 TCGA-AA-3510-01 4 87382 87382 G C Z95704.2 3'Flank 0.19 TCGA-AA-3510-01 4 87694008 87694008 C T PTPN13 Missense_Mutation p.S1754L 0.47 tolerated(0.72) benign(0.008) TCGA-AA-3510-01 4 87728798 87728798 C T PTPN13 Silent p.F2282F 0.28 TCGA-AA-3510-01 4 87744873 87744873 C T SLC10A6 Missense_Mutation p.E368K 0.39 tolerated_low_confidence(0.18) benign(0.002) TCGA-AA-3510-01 4 87744971 87744971 G A SLC10A6 Missense_Mutation p.S335L 0.36 deleterious(0.05) benign(0.037) TCGA-AA-3510-01 4 88375601 88375601 G A NUDT9 Missense_Mutation p.E290K 0.28 deleterious(0.02) possibly_damaging(0.577) TCGA-AA-3510-01 4 88401662 88401662 A C SPARCL1 Missense_Mutation p.I560S 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 4 88536777 88536777 G A DSPP Missense_Mutation p.S988N 0.34 unknown(0) TCGA-AA-3510-01 4 88584083 88584083 G A DMP1 Missense_Mutation p.E385K 0.35 deleterious(0.01) probably_damaging(0.974) TCGA-AA-3510-01 4 88723676 88723676 G A IBSP Missense_Mutation p.R24Q 0.34 deleterious(0.03) benign(0.319) TCGA-AA-3510-01 4 89425464 89425464 T G HERC5 Missense_Mutation p.F888L 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 4 90856717 90856717 A G MMRN1 Missense_Mutation p.D629G 0.09 deleterious(0.04) possibly_damaging(0.899) TCGA-AA-3510-01 4 91229855 91229855 G A CCSER1 Silent p.E140E 0.37 TCGA-AA-3510-01 4 91230558 91230558 G A CCSER1 Missense_Mutation p.E375K 0.25 tolerated_low_confidence(0.13) benign(0.202) TCGA-AA-3510-01 4 9785072 9785072 G A DRD5 Silent p.P473P 0.25 TCGA-AA-3510-01 4 99027209 99027209 C A STPG2 Missense_Mutation p.K169N 0.28 tolerated(0.1) benign(0.245) TCGA-AA-3510-01 4 99055605 99055605 T C STPG2 Missense_Mutation p.N39D 0.42 deleterious(0.02) benign(0.187) TCGA-AA-3510-01 5 100147768 100147768 G A ST8SIA4 Missense_Mutation p.A288V 0.45 probably_damaging(0.996) TCGA-AA-3510-01 5 100222086 100222086 T G ST8SIA4 Missense_Mutation p.E155A 0.34 benign(0.002) TCGA-AA-3510-01 5 101755676 101755676 G T SLCO6A1 Silent p.V442V 0.09 TCGA-AA-3510-01 5 101834355 101834355 C T SLCO6A1 Missense_Mutation p.R65Q 0.32 tolerated(0.69) benign(0.011) TCGA-AA-3510-01 5 102343184 102343184 C T PAM Missense_Mutation p.P680S 0.43 deleterious(0.05) probably_damaging(0.991) TCGA-AA-3510-01 5 102489620 102489620 T C PPIP5K2 Missense_Mutation p.M400T 0.32 tolerated(0.06) probably_damaging(0.948) TCGA-AA-3510-01 5 102537445 102537445 C A PPIP5K2 3'UTR 0.34 TCGA-AA-3510-01 5 10262622 10262622 C T CCT5 Silent p.H403H 0.35 TCGA-AA-3510-01 5 108516519 108516519 G A FER Missense_Mutation p.R707H 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 108714627 108714627 G A PJA2 Silent p.V187V 0.30 TCGA-AA-3510-01 5 110096916 110096916 C T SLC25A46 Nonsense_Mutation p.R231* 0.35 TCGA-AA-3510-01 5 110407676 110407676 G A TSLP Missense_Mutation p.D30N 0.25 tolerated(1) benign(0.009) TCGA-AA-3510-01 5 110409262 110409262 C T TSLP Silent p.C90C 0.32 TCGA-AA-3510-01 5 11111045 11111045 G A CTNND2 Silent p.G796G 0.39 TCGA-AA-3510-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.30 TCGA-AA-3510-01 5 112769508 112769508 A G TSSK1B Silent p.G343G 0.41 TCGA-AA-3510-01 5 113698823 113698823 C T KCNN2 Silent p.I117I 0.29 TCGA-AA-3510-01 5 113740189 113740189 C T KCNN2 Missense_Mutation p.R213C 0.38 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 5 121787136 121787136 G A SNCAIP Missense_Mutation p.R865Q 0.32 tolerated(0.06) probably_damaging(0.997) TCGA-AA-3510-01 5 1219197 1219197 G A SLC6A19 Silent p.P451P 0.43 TCGA-AA-3510-01 5 122163131 122163131 C T SNX2 Nonsense_Mutation p.R472* 0.24 TCGA-AA-3510-01 5 124080433 124080433 T G ZNF608 Missense_Mutation p.K84Q 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3510-01 5 124080589 124080589 T G ZNF608 Missense_Mutation p.N32H 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 5 126253912 126253912 A G MARCH3 5'UTR 0.42 TCGA-AA-3510-01 5 127469897 127469897 G A SLC12A2 Missense_Mutation p.R410Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 5 127493858 127493858 T C SLC12A2 Splice_Site p.X825_splice 0.08 TCGA-AA-3510-01 5 127510235 127510235 G T SLC12A2 Nonsense_Mutation p.E936* 0.15 TCGA-AA-3510-01 5 127654625 127654625 G T FBN2 Missense_Mutation p.H1514N 0.36 deleterious(0) benign(0.348) TCGA-AA-3510-01 5 127685160 127685160 A C FBN2 Silent p.V956V 0.30 TCGA-AA-3510-01 5 127713526 127713526 G A FBN2 Nonsense_Mutation p.R590* 0.16 TCGA-AA-3510-01 5 127866356 127866356 A C FBN2 Missense_Mutation p.F123C 0.27 deleterious(0.01) benign(0) TCGA-AA-3510-01 5 128351701 128351701 G A SLC27A6 Missense_Mutation p.E365K 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 128984548 128984548 G A ADAMTS19 Silent p.E681E 0.41 TCGA-AA-3510-01 5 129520720 129520720 G A CHSY3 Missense_Mutation p.G629R 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 131726414 131726414 C T SLC22A5 Missense_Mutation p.S362L 0.38 deleterious(0.04) probably_damaging(0.931) TCGA-AA-3510-01 5 132197607 132197607 G T GDF9 Missense_Mutation p.L347I 0.40 tolerated(0.09) benign(0.013) TCGA-AA-3510-01 5 132235319 132235319 T C AFF4 Missense_Mutation p.D383G 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 5 132534882 132534882 A C FSTL4 Missense_Mutation p.S812A 0.43 tolerated(0.29) probably_damaging(0.997) TCGA-AA-3510-01 5 133909449 133909449 C T JADE2 Nonsense_Mutation p.R517* 0.22 TCGA-AA-3510-01 5 134077130 134077130 G T CAMLG Nonsense_Mutation p.E184* 0.29 TCGA-AA-3510-01 5 137528328 137528328 C T CDC23 Missense_Mutation p.R344H 0.39 deleterious(0.03) benign(0.248) TCGA-AA-3510-01 5 137533962 137533962 T G CDC23 Missense_Mutation p.K313T 0.41 deleterious(0.04) benign(0.108) TCGA-AA-3510-01 5 13770989 13770989 C A DNAH5 Missense_Mutation p.E3158D 0.08 possibly_damaging(0.523) TCGA-AA-3510-01 5 137729047 137729047 C A KDM3B Missense_Mutation p.F939L 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 5 137780988 137780988 C T REEP2 Silent p.D161D 0.26 TCGA-AA-3510-01 5 137897307 137897307 C A HSPA9 Nonsense_Mutation p.E382* 0.12 TCGA-AA-3510-01 5 13807809 13807809 C T DNAH5 Missense_Mutation p.G2593E 0.31 probably_damaging(0.982) TCGA-AA-3510-01 5 138119053 138119053 G A CTNNA1 Missense_Mutation p.R98Q 0.07 tolerated(0.22) benign(0.031) TCGA-AA-3510-01 5 138268313 138268313 G A CTNNA1 Missense_Mutation p.R782H 0.22 deleterious(0) probably_damaging(0.99) TCGA-AA-3510-01 5 138643465 138643465 G A MATR3 Missense_Mutation p.D121N 0.35 deleterious(0) probably_damaging(0.971) TCGA-AA-3510-01 5 13876877 13876877 C A DNAH5 Missense_Mutation p.K1104N 0.41 benign(0.403) TCGA-AA-3510-01 5 13920716 13920716 C T DNAH5 Missense_Mutation p.R224Q 0.08 benign(0) TCGA-AA-3510-01 5 139828810 139828810 G A ANKHD1 Missense_Mutation p.V388I 0.31 unknown(0) TCGA-AA-3510-01 5 139907465 139907465 A C ANKHD1 Missense_Mutation p.K1699Q 0.34 probably_damaging(0.998) TCGA-AA-3510-01 5 140174694 140174694 G A PCDHA2 Missense_Mutation p.A49T 0.35 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-AA-3510-01 5 140222487 140222487 G A PCDHA8 Silent p.E527E 0.15 TCGA-AA-3510-01 5 140231253 140231253 G A PCDHA9 Intron 0.24 TCGA-AA-3510-01 5 1403064 1403064 G T SLC6A3 Missense_Mutation p.F580L 0.40 tolerated(1) benign(0.003) TCGA-AA-3510-01 5 140307635 140307635 G A PCDHAC1 Silent p.Q386Q 0.37 TCGA-AA-3510-01 5 140348138 140348138 G A PCDHAC2 Missense_Mutation p.R596Q 0.32 deleterious(0.02) possibly_damaging(0.832) TCGA-AA-3510-01 5 140431920 140431920 C T PCDHB1 Missense_Mutation p.L289F 0.31 tolerated(0.62) possibly_damaging(0.61) TCGA-AA-3510-01 5 140475626 140475626 G A PCDHB2 Missense_Mutation p.E418K 0.12 deleterious_low_confidence(0.03) benign(0.262) TCGA-AA-3510-01 5 140481560 140481560 G A PCDHB3 Missense_Mutation p.D443N 0.37 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-AA-3510-01 5 140502125 140502125 G A PCDHB4 Missense_Mutation p.R182Q 0.12 tolerated_low_confidence(0.24) benign(0.113) TCGA-AA-3510-01 5 140532642 140532642 A G PCDHB6 3'UTR 0.34 TCGA-AA-3510-01 5 140553634 140553634 G T PCDHB7 Missense_Mutation p.E406D 0.26 tolerated_low_confidence(0.17) benign(0.007) TCGA-AA-3510-01 5 140554282 140554282 C T PCDHB7 Silent p.G622G 0.10 TCGA-AA-3510-01 5 140558122 140558122 G T PCDHB8 Missense_Mutation p.E169D 0.04 deleterious_low_confidence(0.03) benign(0.003) TCGA-AA-3510-01 5 140573502 140573502 C T PCDHB10 Silent p.F459F 0.10 TCGA-AA-3510-01 5 140574446 140574446 C T PCDHB10 Missense_Mutation p.S774L 0.10 deleterious_low_confidence(0.01) benign(0.002) TCGA-AA-3510-01 5 140581715 140581715 C T PCDHB11 Nonsense_Mutation p.R790* 0.25 TCGA-AA-3510-01 5 140626087 140626087 C T PCDHB15 Missense_Mutation p.S314L 0.35 deleterious_low_confidence(0.04) benign(0.043) TCGA-AA-3510-01 5 140712434 140712434 C T PCDHGA1 Missense_Mutation p.S728L 0.34 deleterious_low_confidence(0) benign(0.014) TCGA-AA-3510-01 5 140724693 140724693 G T PCDHGA3 Nonsense_Mutation p.E365* 0.21 TCGA-AA-3510-01 5 140740889 140740889 C T PCDHGB2 Missense_Mutation p.S396F 0.32 deleterious(0.04) benign(0.248) TCGA-AA-3510-01 5 140743999 140743999 G A PCDHGA5 Silent p.S34S 0.12 TCGA-AA-3510-01 5 140744933 140744933 G A PCDHGA5 Missense_Mutation p.E346K 0.30 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-AA-3510-01 5 140745139 140745139 G T PCDHGA5 Missense_Mutation p.E414D 0.18 deleterious_low_confidence(0.03) benign(0.395) TCGA-AA-3510-01 5 140755771 140755771 C T PCDHGA6 Silent p.F707F 0.35 TCGA-AA-3510-01 5 140768371 140768371 T G PCDHGB4 Missense_Mutation p.F307C 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 5 140769258 140769258 T C PCDHGB4 Missense_Mutation p.S603P 0.15 deleterious(0) probably_damaging(0.991) TCGA-AA-3510-01 5 140773387 140773387 C T PCDHGA8 Missense_Mutation p.S336L 0.34 deleterious_low_confidence(0.01) benign(0.018) TCGA-AA-3510-01 5 140788951 140788951 T G PCDHGB6 Missense_Mutation p.I394M 0.40 deleterious(0.03) possibly_damaging(0.706) TCGA-AA-3510-01 5 140793112 140793112 G T PCDHGA10 Nonsense_Mutation p.E124* 0.34 TCGA-AA-3510-01 5 140807788 140807788 G A PCDHGB6 Intron 0.40 TCGA-AA-3510-01 5 140866238 140866238 C T PCDHGC4 Nonsense_Mutation p.R500* 0.41 TCGA-AA-3510-01 5 141059733 141059733 G A ARAP3 Silent p.G107G 0.10 TCGA-AA-3510-01 5 141358278 141358278 G A RNF14 Silent p.R239R 0.22 TCGA-AA-3510-01 5 142689725 142689725 G A NR3C1 Nonsense_Mutation p.R470* 0.37 TCGA-AA-3510-01 5 14461131 14461131 C T TRIO Missense_Mutation p.S1736L 0.25 benign(0.009) TCGA-AA-3510-01 5 145719994 145719994 C T POU4F3 Missense_Mutation p.S335L 0.19 deleterious(0) possibly_damaging(0.798) TCGA-AA-3510-01 5 145894555 145894555 T G GPR151 Missense_Mutation p.K374N 0.34 tolerated(0.32) benign(0.007) TCGA-AA-3510-01 5 146435260 146435260 T C PPP2R2B Missense_Mutation p.N16S 0.30 tolerated_low_confidence(0.8) benign(0) TCGA-AA-3510-01 5 147466011 147466011 T G SPINK5 Missense_Mutation p.F109C 0.40 deleterious(0) probably_damaging(0.947) TCGA-AA-3510-01 5 148407589 148407589 G A SH3TC2 Missense_Mutation p.A569V 0.32 tolerated(0.71) benign(0.021) TCGA-AA-3510-01 5 148687128 148687128 C T AFAP1L1 Silent p.F233F 0.26 TCGA-AA-3510-01 5 149374299 149374299 G T TIGD6 3'UTR 0.15 TCGA-AA-3510-01 5 149918810 149918810 C T NDST1 Silent p.C486C 0.45 TCGA-AA-3510-01 5 149919687 149919687 G A NDST1 Missense_Mutation p.R537H 0.08 deleterious(0) probably_damaging(0.983) TCGA-AA-3510-01 5 150310686 150310686 C A ZNF300P1 RNA 0.32 TCGA-AA-3510-01 5 150657004 150657004 G A SLC36A3 Missense_Mutation p.P496S 0.23 deleterious(0.04) benign(0.003) TCGA-AA-3510-01 5 150678233 150678233 G T SLC36A3 Missense_Mutation p.T47N 0.28 deleterious(0) probably_damaging(0.936) TCGA-AA-3510-01 5 150887036 150887036 G A FAT2 Missense_Mutation p.L4066F 0.25 benign(0.002) TCGA-AA-3510-01 5 150943200 150943200 C T FAT2 Missense_Mutation p.G1087E 0.25 probably_damaging(1) TCGA-AA-3510-01 5 151051203 151051203 C A SPARC Missense_Mutation p.E87D 0.36 tolerated(0.29) benign(0.003) TCGA-AA-3510-01 5 151231043 151231043 T C GLRA1 Missense_Mutation p.M274V 0.20 tolerated(0.38) possibly_damaging(0.474) TCGA-AA-3510-01 5 153144186 153144186 C A GRIA1 Missense_Mutation p.F682L 0.27 deleterious(0) possibly_damaging(0.887) TCGA-AA-3510-01 5 153755930 153755930 G A GALNT10 Missense_Mutation p.R221Q 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 153830703 153830703 G A SAP30L Missense_Mutation p.R85Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 5 156608047 156608047 G T ITK Missense_Mutation p.R20I 0.36 deleterious(0.04) possibly_damaging(0.524) TCGA-AA-3510-01 5 156667159 156667159 C T ITK Silent p.F313F 0.30 TCGA-AA-3510-01 5 156734839 156734839 G T CYFIP2 Missense_Mutation p.R263I 0.26 deleterious(0) possibly_damaging(0.775) TCGA-AA-3510-01 5 158135108 158135108 G T EBF1 Missense_Mutation p.F541L 0.28 tolerated_low_confidence(0.11) benign(0.003) TCGA-AA-3510-01 5 158588350 158588350 T G RNF145 Missense_Mutation p.N547T 0.41 deleterious(0.04) benign(0.065) TCGA-AA-3510-01 5 158750222 158750222 G A IL12B Silent p.V68V 0.30 TCGA-AA-3510-01 5 159520761 159520761 C T PWWP2A Missense_Mutation p.R299Q 0.12 deleterious(0) probably_damaging(0.938) TCGA-AA-3510-01 5 159834979 159834979 C A SLU7 Nonsense_Mutation p.E306* 0.14 TCGA-AA-3510-01 5 161116149 161116149 G T GABRA6 Missense_Mutation p.Q140H 0.35 deleterious(0.02) benign(0.014) TCGA-AA-3510-01 5 161324311 161324311 A C GABRA1 Missense_Mutation p.K418N 0.25 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 5 161495013 161495013 C T GABRG2 Missense_Mutation p.S3L 0.47 deleterious_low_confidence(0.02) benign(0.005) TCGA-AA-3510-01 5 162896749 162896750 - A HMMR Frame_Shift_Ins p.T128Nfs*7 0.25 TCGA-AA-3510-01 5 162900248 162900248 C T HMMR Silent p.I238I 0.30 TCGA-AA-3510-01 5 162900466 162900466 T G HMMR Missense_Mutation p.I269M 0.15 deleterious(0.04) benign(0.132) TCGA-AA-3510-01 5 167654915 167654915 G A TENM2 Missense_Mutation p.S1767N 0.43 deleterious(0.02) benign(0.118) TCGA-AA-3510-01 5 167674778 167674778 C T TENM2 Silent p.F2278F 0.62 TCGA-AA-3510-01 5 168199874 168199874 G A SLIT3 Silent p.I457I 0.36 TCGA-AA-3510-01 5 169122842 169122842 T G DOCK2 Missense_Mutation p.I293M 0.09 deleterious(0) possibly_damaging(0.708) TCGA-AA-3510-01 5 169446017 169446017 A G DOCK2 Missense_Mutation p.T1096A 0.09 tolerated(0.07) possibly_damaging(0.831) TCGA-AA-3510-01 5 169509855 169509855 A G DOCK2 Missense_Mutation p.D1829G 0.50 deleterious_low_confidence(0.03) benign(0.021) TCGA-AA-3510-01 5 169688116 169688116 C A LCP2 Nonsense_Mutation p.E318* 0.40 TCGA-AA-3510-01 5 169931541 169931541 C G KCNIP1 5'Flank 0.29 TCGA-AA-3510-01 5 171773171 171773171 C T SH3PXD2B Missense_Mutation p.G386D 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 172750290 172750290 G A STC2 Silent p.C146C 0.08 TCGA-AA-3510-01 5 172752900 172752900 G T STC2 Missense_Mutation p.L89M 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 17276768 17276768 G A BASP1 3'UTR 0.36 TCGA-AA-3510-01 5 175764095 175764095 G A SIMC1 Missense_Mutation p.E353K 0.26 deleterious(0) possibly_damaging(0.656) TCGA-AA-3510-01 5 175798979 175798979 G A ARL10 3'UTR 0.43 TCGA-AA-3510-01 5 176308519 176308519 C T HK3 Missense_Mutation p.R804Q 0.57 tolerated(0.59) possibly_damaging(0.737) TCGA-AA-3510-01 5 176402449 176402449 C A UIMC1 Silent p.T60T 0.37 TCGA-AA-3510-01 5 176778561 176778561 T C LMAN2 Missense_Mutation p.T30A 0.38 tolerated(0.21) unknown(0) TCGA-AA-3510-01 5 176930373 176930373 G A DOK3 3'Flank 0.33 TCGA-AA-3510-01 5 176940033 176940033 G A DDX41 Silent p.C427C 0.33 TCGA-AA-3510-01 5 178359678 178359678 G A ZFP2 Missense_Mutation p.R455Q 0.36 tolerated(0.83) benign(0.013) TCGA-AA-3510-01 5 178417669 178417669 C A GRM6 Missense_Mutation p.K312N 0.14 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 5 178460159 178460159 G T ZNF879 Nonsense_Mutation p.E404* 0.49 TCGA-AA-3510-01 5 179763551 179763551 C T GFPT2 Missense_Mutation p.E48K 0.31 tolerated(0.86) benign(0.005) TCGA-AA-3510-01 5 180048610 180048610 T C FLT4 Missense_Mutation p.Y651C 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 180659667 180659667 G T TRIM41 Missense_Mutation p.M306I 0.12 tolerated(0.14) benign(0.021) TCGA-AA-3510-01 5 180662287 180662287 A C TRIM41 3'UTR 0.08 TCGA-AA-3510-01 5 180666517 180666517 G A GNB2L1 Silent p.I165I 0.34 TCGA-AA-3510-01 5 21752338 21752338 A C CDH12 Silent p.V631V 0.33 TCGA-AA-3510-01 5 23522454 23522454 C T PRDM9 Nonsense_Mutation p.R184* 0.31 TCGA-AA-3510-01 5 24487647 24487647 G T CDH10 3'UTR 0.31 TCGA-AA-3510-01 5 24488046 24488046 G T CDH10 Missense_Mutation p.P698H 0.31 tolerated(0.19) probably_damaging(0.998) TCGA-AA-3510-01 5 24593636 24593636 G T CDH10 5'UTR 0.23 TCGA-AA-3510-01 5 26906200 26906200 C A CDH9 Nonsense_Mutation p.E227* 0.29 TCGA-AA-3510-01 5 26915832 26915832 C A CDH9 Silent p.S143S 0.31 TCGA-AA-3510-01 5 31410983 31410983 G A DROSHA Silent p.S1179S 0.20 TCGA-AA-3510-01 5 32230347 32230347 C A MTMR12 Missense_Mutation p.R594I 0.28 deleterious(0.01) probably_damaging(1) TCGA-AA-3510-01 5 32394518 32394518 G T ZFR Intron 0.29 TCGA-AA-3510-01 5 32791243 32791243 G T NPR3 3'UTR 0.38 TCGA-AA-3510-01 5 33527453 33527453 T C ADAMTS12 Missense_Mutation p.D1542G 0.33 deleterious(0) possibly_damaging(0.543) TCGA-AA-3510-01 5 33984560 33984560 G A SLC45A2 Silent p.F43F 0.30 TCGA-AA-3510-01 5 34911900 34911900 G A RAD1 Nonsense_Mutation p.R109* 0.34 TCGA-AA-3510-01 5 35068332 35068332 C T PRLR Missense_Mutation p.A281T 0.29 tolerated(1) benign(0.001) TCGA-AA-3510-01 5 35705871 35705871 G T SPEF2 Nonsense_Mutation p.E876* 0.32 TCGA-AA-3510-01 5 35712934 35712934 G T SPEF2 Nonsense_Mutation p.E954* 0.23 TCGA-AA-3510-01 5 35867523 35867523 G A IL7R Missense_Mutation p.E113K 0.26 tolerated(0.96) benign(0) TCGA-AA-3510-01 5 35910596 35910596 C A CAPSL Nonsense_Mutation p.E63* 0.43 TCGA-AA-3510-01 5 36037951 36037951 G A UGT3A2 Missense_Mutation p.L415F 0.25 deleterious(0.01) possibly_damaging(0.846) TCGA-AA-3510-01 5 36257107 36257107 C T RANBP3L Missense_Mutation p.R305Q 0.39 tolerated(0.77) benign(0.001) TCGA-AA-3510-01 5 36265140 36265140 C T RANBP3L Missense_Mutation p.R159Q 0.35 tolerated(1) benign(0) TCGA-AA-3510-01 5 36265606 36265606 A C RANBP3L Silent p.V120V 0.34 TCGA-AA-3510-01 5 36608664 36608664 C T SLC1A3 Missense_Mutation p.R47W 0.34 deleterious(0) probably_damaging(0.991) TCGA-AA-3510-01 5 36985084 36985084 A C NIPBL Missense_Mutation p.K601T 0.30 deleterious_low_confidence(0.01) benign(0.012) TCGA-AA-3510-01 5 37187554 37187554 T G C5orf42 Missense_Mutation p.I1348L 0.18 deleterious(0.01) possibly_damaging(0.837) TCGA-AA-3510-01 5 37187588 37187588 C A C5orf42 Silent p.R1336R 0.34 TCGA-AA-3510-01 5 37292033 37292033 G A NUP155 Missense_Mutation p.S1382F 0.30 deleterious(0) possibly_damaging(0.887) TCGA-AA-3510-01 5 38412741 38412741 C T EGFLAM Silent p.G495G 0.39 TCGA-AA-3510-01 5 38881750 38881750 C A OSMR Missense_Mutation p.S101Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 5 39393440 39393440 T G DAB2 Missense_Mutation p.K49N 0.32 deleterious(0) benign(0.018) TCGA-AA-3510-01 5 40691960 40691960 G A PTGER4 Missense_Mutation p.R316Q 0.38 deleterious(0) probably_damaging(0.98) TCGA-AA-3510-01 5 40763122 40763122 C T PRKAA1 Missense_Mutation p.E495K 0.35 tolerated(0.09) benign(0.272) TCGA-AA-3510-01 5 40950023 40950023 G T C7 Nonsense_Mutation p.E334* 0.42 TCGA-AA-3510-01 5 40962230 40962230 G T C7 Nonsense_Mutation p.E569* 0.10 TCGA-AA-3510-01 5 40979971 40979971 G A C7 Silent p.E770E 0.41 TCGA-AA-3510-01 5 41057220 41057220 G A MROH2B Missense_Mutation p.L304F 0.37 deleterious(0.05) probably_damaging(0.915) TCGA-AA-3510-01 5 41071000 41071000 G T MROH2B 5'UTR 0.39 TCGA-AA-3510-01 5 41199882 41199882 G A C6 Missense_Mutation p.R145C 0.15 deleterious(0.01) probably_damaging(0.912) TCGA-AA-3510-01 5 41941372 41941372 C T FBXO4 Missense_Mutation p.R385C 0.28 deleterious_low_confidence(0.01) benign(0.153) TCGA-AA-3510-01 5 43280159 43280159 C T NIM1K Silent p.G213G 0.24 TCGA-AA-3510-01 5 43280468 43280468 C T NIM1K Silent p.I316I 0.31 TCGA-AA-3510-01 5 432969 432969 A G AHRR Missense_Mutation p.D362G 0.38 deleterious(0.01) possibly_damaging(0.854) TCGA-AA-3510-01 5 43388494 43388494 C T CCL28 Missense_Mutation p.R50H 0.10 tolerated(0.38) benign(0.005) TCGA-AA-3510-01 5 44388546 44388546 C A FGF10 Missense_Mutation p.R80I 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 45353273 45353273 C A HCN1 Nonsense_Mutation p.E436* 0.16 TCGA-AA-3510-01 5 49698122 49698122 C A EMB Missense_Mutation p.Q303H 0.30 tolerated(0.06) probably_damaging(0.979) TCGA-AA-3510-01 5 5209320 5209320 C T ADAMTS16 Silent p.F522F 0.25 TCGA-AA-3510-01 5 5237131 5237131 C A ADAMTS16 Missense_Mutation p.F691L 0.30 deleterious(0) probably_damaging(0.967) TCGA-AA-3510-01 5 52385775 52385775 G A ITGA2 Splice_Site p.X1117_splice 0.16 TCGA-AA-3510-01 5 52398000 52398000 G A MOCS2 Silent p.A51A 0.40 TCGA-AA-3510-01 5 53450419 53450419 C A ARL15 Nonsense_Mutation p.E82* 0.31 TCGA-AA-3510-01 5 53839108 53839108 C A SNX18 Missense_Mutation p.S574Y 0.38 deleterious(0.01) possibly_damaging(0.804) TCGA-AA-3510-01 5 54403662 54403662 A G GZMA Missense_Mutation p.T86A 0.30 tolerated(0.15) benign(0.001) TCGA-AA-3510-01 5 54439460 54439460 C A CDC20B Nonsense_Mutation p.E123* 0.30 TCGA-AA-3510-01 5 54456202 54456202 C A GPX8 Missense_Mutation p.S61Y 0.20 deleterious(0) probably_damaging(0.987) TCGA-AA-3510-01 5 55110985 55110985 A C DDX4 Missense_Mutation p.K658Q 0.34 deleterious(0) probably_damaging(0.988) TCGA-AA-3510-01 5 55149220 55149220 G T IL31RA Intron 0.41 TCGA-AA-3510-01 5 56219781 56219781 C A MIER3 Missense_Mutation p.R337I 0.28 deleterious(0) possibly_damaging(0.724) TCGA-AA-3510-01 5 56778577 56778577 A G ACTBL2 5'UTR 0.33 TCGA-AA-3510-01 5 57913641 57913641 G A RAB3C Missense_Mutation p.D66N 0.31 deleterious(0) probably_damaging(0.986) TCGA-AA-3510-01 5 60821674 60821674 G A ZSWIM6 Missense_Mutation p.A521T 0.35 deleterious(0.02) possibly_damaging(0.596) TCGA-AA-3510-01 5 60999977 60999977 G A C5orf64 3'UTR 0.42 TCGA-AA-3510-01 5 61659560 61659560 G A KIF2A Missense_Mutation p.R434Q 0.33 deleterious(0) probably_damaging(0.976) TCGA-AA-3510-01 5 63257220 63257220 G A HTR1A Silent p.C109C 0.45 TCGA-AA-3510-01 5 63509763 63509763 G T RNF180 Nonsense_Mutation p.E204* 0.31 TCGA-AA-3510-01 5 63626215 63626215 G T RNF180 Missense_Mutation p.A521S 0.18 tolerated(0.48) benign(0) TCGA-AA-3510-01 5 63626221 63626221 C A RNF180 Missense_Mutation p.H523N 0.35 tolerated(0.18) benign(0) TCGA-AA-3510-01 5 65350255 65350255 C T ERBB2IP Nonsense_Mutation p.R1037* 0.25 TCGA-AA-3510-01 5 66479671 66479671 C T CD180 Missense_Mutation p.D334N 0.33 tolerated(0.07) benign(0.381) TCGA-AA-3510-01 5 6663020 6663020 C T SRD5A1 Silent p.G218G 0.40 TCGA-AA-3510-01 5 68396694 68396694 C T SLC30A5 Silent p.F48F 0.32 TCGA-AA-3510-01 5 68467182 68467182 T C CCNB1 Missense_Mutation p.I150T 0.38 deleterious(0) benign(0.097) TCGA-AA-3510-01 5 70785408 70785408 G T BDP1 Missense_Mutation p.R464I 0.27 deleterious(0) probably_damaging(0.943) TCGA-AA-3510-01 5 71015051 71015051 G A CARTPT 5'UTR 0.40 TCGA-AA-3510-01 5 71490257 71490257 C A MAP1B Missense_Mutation p.L359I 0.36 unknown(0) TCGA-AA-3510-01 5 72187658 72187658 C T TNPO1 Missense_Mutation p.P575S 0.33 deleterious(0) possibly_damaging(0.735) TCGA-AA-3510-01 5 72848491 72848491 G T ANKRA2 3'UTR 0.39 TCGA-AA-3510-01 5 72864281 72864281 A C UTP15 Missense_Mutation p.K74Q 0.32 deleterious(0.03) probably_damaging(0.961) TCGA-AA-3510-01 5 73931445 73931445 C T ENC1 Missense_Mutation p.R289Q 0.39 deleterious(0.04) benign(0.023) TCGA-AA-3510-01 5 74324606 74324606 G T GCNT4 Silent p.I419I 0.21 TCGA-AA-3510-01 5 74325456 74325456 G A GCNT4 Missense_Mutation p.S136F 0.43 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 75993846 75993846 G A IQGAP2 Missense_Mutation p.R1414Q 0.36 deleterious(0) possibly_damaging(0.756) TCGA-AA-3510-01 5 76028180 76028180 C A F2R Missense_Mutation p.L44I 0.08 tolerated(0.41) benign(0.001) TCGA-AA-3510-01 5 76029028 76029028 C T F2R Silent p.F326F 0.28 TCGA-AA-3510-01 5 76250000 76250000 G A CRHBP Missense_Mutation p.D108N 0.34 tolerated(0.14) probably_damaging(0.913) TCGA-AA-3510-01 5 76342232 76342232 G T AGGF1 Nonsense_Mutation p.E311* 0.32 TCGA-AA-3510-01 5 78338269 78338269 G A DMGDH Nonsense_Mutation p.R344* 0.28 TCGA-AA-3510-01 5 78746837 78746837 G T HOMER1 Missense_Mutation p.F90L 0.11 deleterious(0) possibly_damaging(0.659) TCGA-AA-3510-01 5 79030243 79030243 C A CMYA5 Missense_Mutation p.F1885L 0.29 benign(0.004) TCGA-AA-3510-01 5 79031888 79031888 C T CMYA5 Nonsense_Mutation p.Q2434* 0.30 TCGA-AA-3510-01 5 79034674 79034674 C T CMYA5 Silent p.V3362V 0.10 TCGA-AA-3510-01 5 79095285 79095285 G A CMYA5 Missense_Mutation p.R4019K 0.29 probably_damaging(0.997) TCGA-AA-3510-01 5 80388670 80388670 C T RASGRF2 Missense_Mutation p.R481C 0.39 deleterious(0) probably_damaging(0.973) TCGA-AA-3510-01 5 80497209 80497209 C T RASGRF2 Nonsense_Mutation p.R952* 0.29 TCGA-AA-3510-01 5 80604431 80604431 G A ZCCHC9 Missense_Mutation p.A146T 0.30 tolerated(0.05) benign(0.217) TCGA-AA-3510-01 5 80638540 80638540 T G ACOT12 Missense_Mutation p.K360T 0.33 tolerated(0.52) benign(0.007) TCGA-AA-3510-01 5 80639994 80639994 C T ACOT12 Missense_Mutation p.R322Q 0.36 tolerated(0.06) possibly_damaging(0.833) TCGA-AA-3510-01 5 80641772 80641772 G A ACOT12 Silent p.F235F 0.29 TCGA-AA-3510-01 5 81613993 81613993 C T ATP6AP1L Silent p.I183I 0.42 TCGA-AA-3510-01 5 82648958 82648958 C A XRCC4 Missense_Mutation p.S303Y 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-AA-3510-01 5 82808265 82808265 C T VCAN Intron 0.50 TCGA-AA-3510-01 5 82875859 82875859 G A VCAN Missense_Mutation p.R3314H 0.33 deleterious(0) probably_damaging(0.98) TCGA-AA-3510-01 5 82948454 82948454 G T HAPLN1 Missense_Mutation p.S97Y 0.18 deleterious(0.03) possibly_damaging(0.529) TCGA-AA-3510-01 5 83402502 83402502 T C EDIL3 Missense_Mutation p.T206A 0.16 deleterious(0.01) possibly_damaging(0.519) TCGA-AA-3510-01 5 85580658 85580658 G T NBPF22P RNA 0.28 TCGA-AA-3510-01 5 86690428 86690428 A C CCNH Intron 0.35 TCGA-AA-3510-01 5 89924386 89924386 G T GPR98 Nonsense_Mutation p.E416* 0.36 TCGA-AA-3510-01 5 89949492 89949492 G A GPR98 Silent p.T1367T 0.39 TCGA-AA-3510-01 5 90024546 90024546 C T GPR98 Silent p.L3408L 0.32 TCGA-AA-3510-01 5 90079125 90079125 C A GPR98 Silent p.I4472I 0.24 TCGA-AA-3510-01 5 92923852 92923852 C T NR2F1 Silent p.V231V 0.28 TCGA-AA-3510-01 5 93159893 93159893 G A FAM172A Silent p.F289F 0.38 TCGA-AA-3510-01 5 93300220 93300220 C T FAM172A Silent p.T106T 0.30 TCGA-AA-3510-01 5 94814140 94814140 C T TTC37 Missense_Mutation p.A1407T 0.16 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 5 94927300 94927300 C A ARSK Missense_Mutation p.S356Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 5 95242391 95242391 G A ELL2 Nonsense_Mutation p.R193* 0.27 TCGA-AA-3510-01 5 95728824 95728824 C A PCSK1 Missense_Mutation p.D715Y 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.724) TCGA-AA-3510-01 5 95735861 95735861 T C PCSK1 Missense_Mutation p.H409R 0.33 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 6 100368781 100368781 A G MCHR2 3'UTR 0.30 TCGA-AA-3510-01 6 101053536 101053536 G A ASCC3 Silent p.F1695F 0.06 TCGA-AA-3510-01 6 101296418 101296418 C T ASCC3 Missense_Mutation p.R136Q 0.11 tolerated(0.23) possibly_damaging(0.498) TCGA-AA-3510-01 6 101306888 101306888 C A ASCC3 Intron 0.35 TCGA-AA-3510-01 6 101847070 101847070 G A GRIK2 5'UTR 0.29 TCGA-AA-3510-01 6 10400775 10400775 C T TFAP2A Missense_Mutation p.E311K 0.20 deleterious(0) possibly_damaging(0.898) TCGA-AA-3510-01 6 10529598 10529598 C A GCNT2 Missense_Mutation p.L152M 0.20 deleterious(0.02) possibly_damaging(0.612) TCGA-AA-3510-01 6 105609850 105609850 C T POPDC3 5'UTR 0.11 TCGA-AA-3510-01 6 10671695 10671695 C T C6orf52 Silent p.P151P 0.20 TCGA-AA-3510-01 6 106992559 106992559 G A AIM1 Missense_Mutation p.R1310Q 0.28 tolerated(0.08) probably_damaging(1) TCGA-AA-3510-01 6 10705055 10705055 G A PAK1IP1 Missense_Mutation p.E240K 0.24 tolerated(0.1) benign(0.192) TCGA-AA-3510-01 6 10709560 10709560 C T PAK1IP1 Missense_Mutation p.R352C 0.39 tolerated_low_confidence(0.2) benign(0.001) TCGA-AA-3510-01 6 107100203 107100203 C T QRSL1 Missense_Mutation p.S226L 0.16 deleterious(0.02) benign(0.44) TCGA-AA-3510-01 6 10910430 10910430 G T SYCP2L Missense_Mutation p.R290I 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 6 109285496 109285496 G T ARMC2 Nonsense_Mutation p.E756* 0.22 TCGA-AA-3510-01 6 109286245 109286245 A C ARMC2 Missense_Mutation p.K783T 0.36 deleterious(0) probably_damaging(0.989) TCGA-AA-3510-01 6 109954415 109954415 A C AK9 Missense_Mutation p.Y349D 0.18 tolerated(0.08) benign(0.222) TCGA-AA-3510-01 6 110421629 110421629 G T WASF1 3'UTR 0.26 TCGA-AA-3510-01 6 110746109 110746109 C T SLC22A16 Silent p.A567A 0.38 TCGA-AA-3510-01 6 110763562 110763562 C T SLC22A16 Silent p.T356T 0.23 TCGA-AA-3510-01 6 110948235 110948235 G A CDK19 Missense_Mutation p.R254W 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 6 111213533 111213533 C T AMD1 Missense_Mutation p.R168W 0.31 tolerated(0.2) benign(0.013) TCGA-AA-3510-01 6 111214026 111214026 C T AMD1 Missense_Mutation p.S235L 0.33 tolerated(0.23) benign(0.016) TCGA-AA-3510-01 6 111632408 111632408 T G REV3L Missense_Mutation p.K2887Q 0.27 deleterious(0) probably_damaging(0.984) TCGA-AA-3510-01 6 11185845 11185845 C T NEDD9 Silent p.S685S 0.07 TCGA-AA-3510-01 6 112462026 112462026 G A LAMA4 Missense_Mutation p.S971F 0.30 deleterious(0.01) benign(0.119) TCGA-AA-3510-01 6 112535220 112535220 G T LAMA4 Intron 0.43 TCGA-AA-3510-01 6 114383926 114383926 G A HS3ST5 Silent p.V28V 0.28 TCGA-AA-3510-01 6 116757287 116757287 G T DSE Missense_Mutation p.K552N 0.34 deleterious(0.01) benign(0.372) TCGA-AA-3510-01 6 116758595 116758595 T G DSE 3'UTR 0.33 TCGA-AA-3510-01 6 116782566 116782566 G A FAM26F 5'UTR 0.33 TCGA-AA-3510-01 6 116938309 116938309 G T RSPH4A Nonsense_Mutation p.E175* 0.35 TCGA-AA-3510-01 6 116949479 116949479 C A RSPH4A Missense_Mutation p.L537I 0.26 deleterious(0) probably_damaging(0.982) TCGA-AA-3510-01 6 117248241 117248241 C A RFX6 Missense_Mutation p.S646Y 0.20 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-AA-3510-01 6 117609955 117609955 G T ROS1 Silent p.G2248G 0.18 TCGA-AA-3510-01 6 117715376 117715376 A G ROS1 Silent p.S371S 0.37 TCGA-AA-3510-01 6 117725443 117725443 C A ROS1 Missense_Mutation p.K146N 0.10 deleterious(0) benign(0.165) TCGA-AA-3510-01 6 118880964 118880964 C A PLN 3'UTR 0.38 TCGA-AA-3510-01 6 118881050 118881050 C A PLN 3'UTR 0.30 TCGA-AA-3510-01 6 119238765 119238765 C T MCM9 Missense_Mutation p.E289K 0.23 tolerated(0.13) benign(0.33) TCGA-AA-3510-01 6 12125382 12125382 C T HIVEP1 Missense_Mutation p.S1785L 0.35 tolerated(0.21) benign(0.004) TCGA-AA-3510-01 6 122752580 122752580 G T HSF2 Missense_Mutation p.E412D 0.26 tolerated(0.35) benign(0.438) TCGA-AA-3510-01 6 12294225 12294225 G T EDN1 Missense_Mutation p.E95D 0.16 tolerated(0.09) benign(0.2) TCGA-AA-3510-01 6 123130271 123130271 G A SMPDL3A Silent p.A360A 0.39 TCGA-AA-3510-01 6 126080962 126080962 T G HEY2 3'UTR 0.25 TCGA-AA-3510-01 6 126319737 126319737 G T TRMT11 Missense_Mutation p.K143N 0.32 tolerated(0.18) benign(0.099) TCGA-AA-3510-01 6 127767686 127767686 G A KIAA0408 Missense_Mutation p.S593F 0.35 tolerated(0.06) benign(0.048) TCGA-AA-3510-01 6 127797352 127797352 C T SOGA3 Missense_Mutation p.E607K 0.29 deleterious(0.03) probably_damaging(1) TCGA-AA-3510-01 6 127797566 127797566 T G SOGA3 Missense_Mutation p.E535D 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3510-01 6 128135008 128135008 C T THEMIS Missense_Mutation p.D260N 0.34 tolerated(0.14) benign(0.327) TCGA-AA-3510-01 6 128150816 128150816 C A THEMIS Nonsense_Mutation p.E172* 0.35 TCGA-AA-3510-01 6 128294824 128294824 G A PTPRK Missense_Mutation p.T1379M 0.30 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 6 128403761 128403761 G T PTPRK Nonsense_Mutation p.S533* 0.20 TCGA-AA-3510-01 6 128643310 128643310 C A PTPRK Missense_Mutation p.L123F 0.39 deleterious(0) possibly_damaging(0.891) TCGA-AA-3510-01 6 130425672 130425672 G T L3MBTL3 Missense_Mutation p.R613I 0.24 deleterious(0.01) benign(0.177) TCGA-AA-3510-01 6 1314649 1314649 C A FOXQ1 3'UTR 0.33 TCGA-AA-3510-01 6 131914183 131914183 C A MED23 Nonsense_Mutation p.E1121* 0.38 TCGA-AA-3510-01 6 131917198 131917198 G A MED23 Nonsense_Mutation p.R962* 0.09 TCGA-AA-3510-01 6 132874669 132874669 G T TAAR8 Missense_Mutation p.D280Y 0.26 deleterious(0.02) benign(0.33) TCGA-AA-3510-01 6 133118188 133118188 G A SLC18B1 Missense_Mutation p.S39L 0.50 tolerated(0.12) benign(0.066) TCGA-AA-3510-01 6 135358048 135358048 C T HBS1L Intron 0.10 TCGA-AA-3510-01 6 136588243 136588243 T G BCLAF1 Missense_Mutation p.N823T 0.10 tolerated(0.13) possibly_damaging(0.607) TCGA-AA-3510-01 6 136590741 136590741 T G BCLAF1 Missense_Mutation p.K685Q 0.25 tolerated(0.06) possibly_damaging(0.607) TCGA-AA-3510-01 6 136597297 136597297 C A BCLAF1 Nonsense_Mutation p.E456* 0.13 TCGA-AA-3510-01 6 137323215 137323215 G T IL20RA Missense_Mutation p.S381Y 0.28 tolerated(0.08) possibly_damaging(0.774) TCGA-AA-3510-01 6 138539329 138539329 G T PBOV1 Missense_Mutation p.F68L 0.34 tolerated_low_confidence(0.45) unknown(0) TCGA-AA-3510-01 6 139101092 139101092 G T CCDC28A Missense_Mutation p.D188Y 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 6 139159566 139159566 C A ECT2L Missense_Mutation p.S86Y 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 6 139175178 139175178 T C ECT2L Missense_Mutation p.V362A 0.17 tolerated(0.29) benign(0.013) TCGA-AA-3510-01 6 139242185 139242185 C A REPS1 Missense_Mutation p.R472I 0.26 tolerated(0.09) probably_damaging(0.999) TCGA-AA-3510-01 6 143091122 143091122 G T HIVEP2 Missense_Mutation p.S1585Y 0.28 deleterious(0.01) possibly_damaging(0.583) TCGA-AA-3510-01 6 144795810 144795810 G A UTRN Missense_Mutation p.R1084Q 0.14 tolerated(0.75) benign(0.046) TCGA-AA-3510-01 6 146350481 146350481 G A GRM1 5'UTR 0.31 TCGA-AA-3510-01 6 146720759 146720759 G A GRM1 Missense_Mutation p.D862N 0.24 tolerated(0.19) benign(0.142) TCGA-AA-3510-01 6 147122375 147122375 C T ADGB Nonsense_Mutation p.R1532* 0.20 TCGA-AA-3510-01 6 149275059 149275059 C T UST Nonsense_Mutation p.R167* 0.28 TCGA-AA-3510-01 6 149911978 149911978 G A GINM1 3'UTR 0.52 TCGA-AA-3510-01 6 150266636 150266636 G T ULBP2 Missense_Mutation p.V93L 0.20 deleterious(0.03) benign(0.115) TCGA-AA-3510-01 6 150290457 150290457 G T ULBP1 Nonsense_Mutation p.E196* 0.28 TCGA-AA-3510-01 6 150690251 150690251 G T IYD Missense_Mutation p.E28D 0.41 tolerated(0.22) benign(0.003) TCGA-AA-3510-01 6 151670352 151670352 G T AKAP12 Nonsense_Mutation p.E276* 0.28 TCGA-AA-3510-01 6 151726264 151726264 G A RMND1 3'UTR 0.40 TCGA-AA-3510-01 6 152473104 152473104 C T SYNE1 Missense_Mutation p.R8101H 0.21 probably_damaging(0.91) TCGA-AA-3510-01 6 152485340 152485340 G T SYNE1 Silent p.S7916S 0.07 TCGA-AA-3510-01 6 152523014 152523014 G A SYNE1 Missense_Mutation p.S7697L 0.38 benign(0.006) TCGA-AA-3510-01 6 152570307 152570307 C T SYNE1 Missense_Mutation p.E6521K 0.37 benign(0.242) TCGA-AA-3510-01 6 152652462 152652462 G T SYNE1 Missense_Mutation p.S4453Y 0.35 probably_damaging(0.976) TCGA-AA-3510-01 6 152716766 152716766 C A SYNE1 Nonsense_Mutation p.E2533* 0.27 TCGA-AA-3510-01 6 152765668 152765668 C A SYNE1 Nonsense_Mutation p.E1239* 0.08 TCGA-AA-3510-01 6 152792832 152792832 C T SYNE1 Missense_Mutation p.R511H 0.31 possibly_damaging(0.756) TCGA-AA-3510-01 6 152826453 152826453 G A SYNE1 Nonsense_Mutation p.R221* 0.09 TCGA-AA-3510-01 6 152949559 152949559 C A SYNE1 5'UTR 0.33 TCGA-AA-3510-01 6 153314089 153314089 C T MTRF1L Silent p.P236P 0.24 TCGA-AA-3510-01 6 154439942 154439942 C T OPRM1 3'Flank 0.46 TCGA-AA-3510-01 6 154587095 154587095 A C IPCEF1 5'UTR 0.30 TCGA-AA-3510-01 6 15615617 15615617 C T DTNBP1 Silent p.A123A 0.40 TCGA-AA-3510-01 6 158049510 158049510 T G ZDHHC14 Missense_Mutation p.V232G 0.13 deleterious(0) possibly_damaging(0.723) TCGA-AA-3510-01 6 159184429 159184429 C A SYTL3 Missense_Mutation p.F537L 0.25 deleterious(0.01) probably_damaging(0.983) TCGA-AA-3510-01 6 160872075 160872075 G A SLC22A3 Missense_Mutation p.R553H 0.43 deleterious(0.03) benign(0.001) TCGA-AA-3510-01 6 160977157 160977157 G A LPA Nonsense_Mutation p.R1625* 0.30 TCGA-AA-3510-01 6 161455372 161455372 G T MAP3K4 Missense_Mutation p.E78D 0.27 tolerated_low_confidence(0.17) benign(0.02) TCGA-AA-3510-01 6 161469993 161469993 G A MAP3K4 Missense_Mutation p.R230Q 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3510-01 6 16274667 16274667 G T GMPR Nonsense_Mutation p.E163* 0.39 TCGA-AA-3510-01 6 166743661 166743661 G T SFT2D1 Missense_Mutation p.F46L 0.24 tolerated(1) benign(0.001) TCGA-AA-3510-01 6 167791558 167791558 T G TCP10 Missense_Mutation p.K101T 0.10 tolerated(0.13) possibly_damaging(0.794) TCGA-AA-3510-01 6 170103786 170103786 C T C6orf120 3'UTR 0.33 TCGA-AA-3510-01 6 170104015 170104015 C A PHF10 3'UTR 0.34 TCGA-AA-3510-01 6 170140248 170140248 C T TCTE3 3'UTR 0.26 TCGA-AA-3510-01 6 170160770 170160770 G T ERMARD Nonsense_Mutation p.E259* 0.37 TCGA-AA-3510-01 6 170886685 170886685 C A PDCD2 Nonsense_Mutation p.E333* 0.44 TCGA-AA-3510-01 6 17629745 17629745 C T NUP153 Silent p.S895S 0.15 TCGA-AA-3510-01 6 18250062 18250062 C T DEK Silent p.P194P 0.35 TCGA-AA-3510-01 6 1930447 1930447 G A GMDS Nonsense_Mutation p.R221* 0.17 TCGA-AA-3510-01 6 20402468 20402468 G T E2F3 Missense_Mutation p.R2I 0.31 deleterious_low_confidence(0.01) benign(0.308) TCGA-AA-3510-01 6 20490816 20490816 A T E2F3 3'UTR 0.62 TCGA-AA-3510-01 6 24448365 24448365 G T GPLD1 Nonsense_Mutation p.C506* 0.22 TCGA-AA-3510-01 6 24532350 24532350 C T ALDH5A1 Silent p.F462F 0.35 TCGA-AA-3510-01 6 24547251 24547251 C A KIAA0319 3'UTR 0.25 TCGA-AA-3510-01 6 24806640 24806640 G A FAM65B Silent p.V1056V 0.34 TCGA-AA-3510-01 6 24843134 24843134 G A FAM65B Nonsense_Mutation p.Q626* 0.22 TCGA-AA-3510-01 6 25773838 25773838 T G SLC17A4 Missense_Mutation p.F308C 0.32 tolerated(0.41) possibly_damaging(0.907) TCGA-AA-3510-01 6 25868567 25868567 C T SLC17A3 Missense_Mutation p.A17T 0.29 tolerated(0.48) benign(0.003) TCGA-AA-3510-01 6 26056484 26056484 G T HIST1H1C Missense_Mutation p.S58Y 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 6 26123939 26123939 G T HIST1H2BC Missense_Mutation p.S65Y 0.36 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AA-3510-01 6 26370827 26370827 C T BTN3A2 Silent p.I237I 0.30 TCGA-AA-3510-01 6 26508797 26508797 C T BTN1A1 Nonsense_Mutation p.R326* 0.08 TCGA-AA-3510-01 6 2685610 2685610 C A MYLK4 Missense_Mutation p.M155I 0.30 deleterious(0) possibly_damaging(0.882) TCGA-AA-3510-01 6 27215808 27215808 A G PRSS16 Missense_Mutation p.D73G 0.38 deleterious(0.02) benign(0.285) TCGA-AA-3510-01 6 27278532 27278532 G A POM121L2 Missense_Mutation p.P473L 0.40 deleterious(0) probably_damaging(0.986) TCGA-AA-3510-01 6 27420681 27420681 C A ZNF184 Missense_Mutation p.E219D 0.29 deleterious(0.03) probably_damaging(0.968) TCGA-AA-3510-01 6 2768980 2768980 T C WRNIP1 Missense_Mutation p.V293A 0.35 deleterious(0) probably_damaging(0.93) TCGA-AA-3510-01 6 27925301 27925301 C T OR2B6 Missense_Mutation p.R95C 0.39 deleterious(0.02) benign(0.002) TCGA-AA-3510-01 6 28053568 28053568 G A ZNF165 Missense_Mutation p.D104N 0.18 deleterious(0.04) benign(0.005) TCGA-AA-3510-01 6 28228282 28228282 G A NKAPL Missense_Mutation p.R378Q 0.22 tolerated(0.19) benign(0.36) TCGA-AA-3510-01 6 28472259 28472259 G A GPX6 Missense_Mutation p.T159I 0.44 deleterious(0.03) benign(0.156) TCGA-AA-3510-01 6 28540035 28540035 G T SCAND3 Missense_Mutation p.L1211I 0.26 tolerated_low_confidence(0.13) benign(0.115) TCGA-AA-3510-01 6 29012930 29012930 G T OR2W1 Missense_Mutation p.S8Y 0.34 tolerated(0.22) benign(0.006) TCGA-AA-3510-01 6 29231764 29231764 G T XXbac-BPG308J9.3 RNA 0.28 TCGA-AA-3510-01 6 29639150 29639150 C A MOG Intron 0.14 TCGA-AA-3510-01 6 29639295 29639295 G A MOG 3'UTR 0.38 TCGA-AA-3510-01 6 30558319 30558319 C T ABCF1 Silent p.I793I 0.34 TCGA-AA-3510-01 6 30620948 30620948 T G C6orf136 3'UTR 0.11 TCGA-AA-3510-01 6 30675917 30675917 G T MDC1 Silent p.V813V 0.36 TCGA-AA-3510-01 6 30918875 30918875 G T DPCR1 Missense_Mutation p.E878D 0.36 tolerated(0.43) possibly_damaging(0.718) TCGA-AA-3510-01 6 3152942 3152942 G T BPHL 3'UTR 0.40 TCGA-AA-3510-01 6 32012952 32012952 G A TNXB Silent p.F15F 0.23 TCGA-AA-3510-01 6 32096894 32096894 G A FKBPL Nonsense_Mutation p.R222* 0.35 TCGA-AA-3510-01 6 32317587 32317587 G T C6orf10 Missense_Mutation p.F93L 0.28 tolerated_low_confidence(0.12) benign(0.294) TCGA-AA-3510-01 6 32713607 32713607 C T HLA-DQA2 Missense_Mutation p.T124M 0.33 tolerated(0.14) benign(0.01) TCGA-AA-3510-01 6 32782108 32782108 G T HLA-DOB Missense_Mutation p.S211Y 0.43 deleterious(0) possibly_damaging(0.886) TCGA-AA-3510-01 6 32803004 32803004 C T TAP2 Missense_Mutation p.R291Q 0.23 tolerated(0.35) benign(0.136) TCGA-AA-3510-01 6 32902622 32902622 G T HLA-DMB 3'UTR 0.28 TCGA-AA-3510-01 6 33054602 33054602 C A HLA-DPB1 3'UTR 0.65 TCGA-AA-3510-01 6 33143455 33143455 C T COL11A2 Missense_Mutation p.E672K 0.21 possibly_damaging(0.502) TCGA-AA-3510-01 6 33400502 33400502 G A SYNGAP1 Missense_Mutation p.R143Q 0.21 deleterious(0) possibly_damaging(0.678) TCGA-AA-3510-01 6 34003690 34003690 G A GRM4 Missense_Mutation p.R733W 0.25 deleterious(0) probably_damaging(0.992) TCGA-AA-3510-01 6 35716450 35716450 G A ARMC12 Missense_Mutation p.E303K 0.29 tolerated(0.34) benign(0.053) TCGA-AA-3510-01 6 36981534 36981534 G A FGD2 Missense_Mutation p.R226H 0.24 tolerated(0.06) probably_damaging(0.963) TCGA-AA-3510-01 6 37336868 37336868 G T RNF8 Missense_Mutation p.K283N 0.29 tolerated(0.11) benign(0.02) TCGA-AA-3510-01 6 37613719 37613719 C T MDGA1 Silent p.P746P 0.36 TCGA-AA-3510-01 6 37614984 37614984 C T MDGA1 Missense_Mutation p.D671N 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3510-01 6 38565739 38565739 C A BTBD9 Missense_Mutation p.K44N 0.17 tolerated(0.37) unknown(0) TCGA-AA-3510-01 6 38690923 38690923 G A DNAH8 5'UTR 0.45 TCGA-AA-3510-01 6 38819387 38819387 C A DNAH8 Missense_Mutation p.F1584L 0.22 probably_damaging(1) TCGA-AA-3510-01 6 39290123 39290123 G A KCNK16 Missense_Mutation p.A65V 0.23 tolerated(0.1) probably_damaging(0.97) TCGA-AA-3510-01 6 40359640 40359640 C T LRFN2 3'UTR 0.20 TCGA-AA-3510-01 6 41000800 41000800 G A UNC5CL Missense_Mutation p.P258S 0.19 tolerated(0.27) benign(0.099) TCGA-AA-3510-01 6 41010892 41010892 C T TSPO2 Silent p.V56V 0.35 TCGA-AA-3510-01 6 41243947 41243947 G T TREM1 Silent p.V207V 0.37 TCGA-AA-3510-01 6 42638405 42638405 T G UBR2 Missense_Mutation p.I1346M 0.10 tolerated(0.06) benign(0.197) TCGA-AA-3510-01 6 42832460 42832460 T G GLTSCR1L Missense_Mutation p.F839C 0.29 tolerated_low_confidence(0.18) benign(0.002) TCGA-AA-3510-01 6 42833069 42833069 C T GLTSCR1L Missense_Mutation p.S1042F 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3510-01 6 42852360 42852360 C T RPL7L1 Silent p.G98G 0.11 TCGA-AA-3510-01 6 43173780 43173780 C T CUL9 Missense_Mutation p.S1610L 0.38 tolerated(0.05) benign(0.108) TCGA-AA-3510-01 6 43220494 43220494 C T TTBK1 Silent p.G42G 0.38 TCGA-AA-3510-01 6 43307266 43307266 G A ZNF318 Silent p.F1490F 0.22 TCGA-AA-3510-01 6 43322802 43322802 G A ZNF318 Missense_Mutation p.A757V 0.38 benign(0.363) TCGA-AA-3510-01 6 43481364 43481364 C T YIPF3 Missense_Mutation p.E135K 0.15 tolerated(0.22) possibly_damaging(0.578) TCGA-AA-3510-01 6 43521182 43521182 G A XPO5 Silent p.F500F 0.14 TCGA-AA-3510-01 6 43526245 43526245 G T XPO5 Missense_Mutation p.F435L 0.32 deleterious(0.01) probably_damaging(0.965) TCGA-AA-3510-01 6 43527941 43527941 G A XPO5 Missense_Mutation p.R399C 0.14 deleterious(0) probably_damaging(0.959) TCGA-AA-3510-01 6 43550759 43550759 T G POLH Missense_Mutation p.S51R 0.21 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 6 43581745 43581745 C A POLH Missense_Mutation p.F531L 0.39 tolerated(0.12) benign(0.37) TCGA-AA-3510-01 6 44121527 44121527 C T TMEM63B Missense_Mutation p.A686V 0.34 tolerated(0.36) probably_damaging(0.982) TCGA-AA-3510-01 6 44216477 44216477 G A HSP90AB1 Silent p.E37E 0.29 TCGA-AA-3510-01 6 44394286 44394286 A C CDC5L Missense_Mutation p.E573A 0.10 deleterious(0) benign(0.196) TCGA-AA-3510-01 6 44982559 44982559 C T SUPT3H Missense_Mutation p.D126N 0.29 tolerated(0.12) possibly_damaging(0.723) TCGA-AA-3510-01 6 46190712 46190712 G T RCAN2 3'UTR 0.38 TCGA-AA-3510-01 6 46424584 46424584 C A RCAN2 Nonsense_Mutation p.E44* 0.26 TCGA-AA-3510-01 6 46659727 46659727 G T TDRD6 Missense_Mutation p.D1288Y 0.18 tolerated(0.19) possibly_damaging(0.568) TCGA-AA-3510-01 6 46672940 46672940 G T PLA2G7 Missense_Mutation p.A380D 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 6 46836697 46836697 C A GPR116 Missense_Mutation p.R515I 0.40 tolerated(0.18) possibly_damaging(0.493) TCGA-AA-3510-01 6 47202494 47202494 G A TNFRSF21 Silent p.F550F 0.43 TCGA-AA-3510-01 6 47647814 47647814 C T GPR111 Missense_Mutation p.S160L 0.40 tolerated(0.18) benign(0.001) TCGA-AA-3510-01 6 47681803 47681803 G T GPR115 Missense_Mutation p.Q274H 0.24 tolerated(0.52) benign(0.252) TCGA-AA-3510-01 6 4943786 4943786 C T CDYL Silent p.F376F 0.38 TCGA-AA-3510-01 6 49518766 49518766 G T C6orf141 Missense_Mutation p.E87D 0.33 tolerated(0.25) benign(0.114) TCGA-AA-3510-01 6 49518906 49518906 T A C6orf141 Missense_Mutation p.F134Y 0.35 tolerated(0.37) possibly_damaging(0.673) TCGA-AA-3510-01 6 4995293 4995293 G A RPP40 3'UTR 0.60 TCGA-AA-3510-01 6 51611556 51611556 C A PKHD1 Missense_Mutation p.D3321Y 0.27 deleterious(0.04) benign(0.21) TCGA-AA-3510-01 6 52761688 52761688 C A GSTA3 Missense_Mutation p.K195N 0.23 tolerated(0.07) benign(0.35) TCGA-AA-3510-01 6 53883756 53883756 G A MLIP 5'UTR 0.15 TCGA-AA-3510-01 6 54095681 54095681 C A MLIP Missense_Mutation p.S428Y 0.38 deleterious(0) probably_damaging(0.991) TCGA-AA-3510-01 6 54216168 54216168 G T TINAG Nonsense_Mutation p.E367* 0.35 TCGA-AA-3510-01 6 55216330 55216330 C T GFRAL Missense_Mutation p.P217L 0.39 tolerated(0.19) benign(0.019) TCGA-AA-3510-01 6 556550 556550 T C EXOC2 Silent p.E622E 0.35 TCGA-AA-3510-01 6 56417395 56417395 C T DST Missense_Mutation p.A2776T 0.22 benign(0.02) TCGA-AA-3510-01 6 56417415 56417415 C T DST Missense_Mutation p.R2769Q 0.33 probably_damaging(0.999) TCGA-AA-3510-01 6 56417984 56417984 C A DST Missense_Mutation p.E2579D 0.34 probably_damaging(0.999) TCGA-AA-3510-01 6 56473897 56473897 C A DST Intron 0.30 TCGA-AA-3510-01 6 56504744 56504744 C A DST Nonsense_Mutation p.E331* 0.40 TCGA-AA-3510-01 6 56507522 56507522 C T DST Missense_Mutation p.R22Q 0.28 benign(0.001) TCGA-AA-3510-01 6 56716260 56716260 G A RP11-472M19.2 Intron 0.26 TCGA-AA-3510-01 6 56846519 56846519 A C BEND6 5'UTR 0.50 TCGA-AA-3510-01 6 56917665 56917665 C A KIAA1586 Nonsense_Mutation p.S123* 0.33 TCGA-AA-3510-01 6 56966322 56966322 G T ZNF451 Intron 0.28 TCGA-AA-3510-01 6 57039019 57039019 A G BAG2 Intron 0.33 TCGA-AA-3510-01 6 57072466 57072466 A G RAB23 Silent p.G67G 0.27 TCGA-AA-3510-01 6 6251104 6251104 G A F13A1 Silent p.I210I 0.38 TCGA-AA-3510-01 6 63989858 63989858 C T LGSN 3'UTR 0.33 TCGA-AA-3510-01 6 64421686 64421686 C A PHF3 Missense_Mutation p.S1401Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 6 64422952 64422952 T C PHF3 Missense_Mutation p.F1823S 0.33 deleterious(0) possibly_damaging(0.868) TCGA-AA-3510-01 6 64776343 64776343 G T EYS Missense_Mutation p.L2205I 0.39 tolerated(0.12) possibly_damaging(0.733) TCGA-AA-3510-01 6 6589011 6589011 T G LY86 Missense_Mutation p.F15C 0.18 tolerated(0.18) benign(0.125) TCGA-AA-3510-01 6 69349105 69349105 A C BAI3 Missense_Mutation p.K180Q 0.34 tolerated(0.36) probably_damaging(0.966) TCGA-AA-3510-01 6 69646536 69646536 G T BAI3 Nonsense_Mutation p.E332* 0.26 TCGA-AA-3510-01 6 69703796 69703796 G A BAI3 Missense_Mutation p.R624K 0.27 tolerated(0.21) possibly_damaging(0.665) TCGA-AA-3510-01 6 69943223 69943223 C T BAI3 Missense_Mutation p.T841I 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 6 70070824 70070824 C A BAI3 Missense_Mutation p.S1220Y 0.45 deleterious(0) probably_damaging(0.991) TCGA-AA-3510-01 6 70589511 70589511 C T COL19A1 Missense_Mutation p.L18F 0.35 tolerated(0.22) unknown(0) TCGA-AA-3510-01 6 71162193 71162193 A C FAM135A Splice_Site p.X26_splice 0.28 TCGA-AA-3510-01 6 72003252 72003252 G A OGFRL1 Missense_Mutation p.R113Q 0.32 tolerated(0.07) possibly_damaging(0.882) TCGA-AA-3510-01 6 72011320 72011320 G T OGFRL1 Missense_Mutation p.E308D 0.14 tolerated(0.8) benign(0.06) TCGA-AA-3510-01 6 7373327 7373327 G T CAGE1 Silent p.V575V 0.38 TCGA-AA-3510-01 6 7373723 7373723 T G CAGE1 Missense_Mutation p.K443N 0.38 deleterious(0.02) probably_damaging(0.978) TCGA-AA-3510-01 6 74124280 74124280 G T DDX43 Missense_Mutation p.R539I 0.23 deleterious(0) probably_damaging(0.978) TCGA-AA-3510-01 6 74138443 74138443 C A MB21D1 Missense_Mutation p.E402D 0.28 tolerated(0.12) benign(0.063) TCGA-AA-3510-01 6 75825601 75825601 C A COL12A1 Missense_Mutation p.K2532N 0.27 probably_damaging(0.996) TCGA-AA-3510-01 6 7584573 7584573 G A DSP Missense_Mutation p.E2360K 0.25 probably_damaging(0.961) TCGA-AA-3510-01 6 75858076 75858076 C A COL12A1 Nonsense_Mutation p.E1429* 0.30 TCGA-AA-3510-01 6 75865479 75865479 C A COL12A1 Silent p.V1114V 0.28 TCGA-AA-3510-01 6 75965796 75965796 G T TMEM30A 3'UTR 0.33 TCGA-AA-3510-01 6 76023417 76023417 G A FILIP1 Missense_Mutation p.R711W 0.39 deleterious(0) probably_damaging(0.937) TCGA-AA-3510-01 6 76660764 76660764 C A IMPG1 Missense_Mutation p.A447S 0.20 tolerated(0.33) benign(0) TCGA-AA-3510-01 6 79607926 79607926 T C IRAK1BP1 Missense_Mutation p.S220P 0.39 tolerated(0.23) benign(0.01) TCGA-AA-3510-01 6 79735718 79735718 C T PHIP Missense_Mutation p.R255Q 0.40 tolerated(0.46) probably_damaging(0.945) TCGA-AA-3510-01 6 80409241 80409241 A C SH3BGRL2 3'UTR 0.56 TCGA-AA-3510-01 6 8062784 8062784 A C BLOC1S5 Missense_Mutation p.F60V 0.38 deleterious(0) possibly_damaging(0.869) TCGA-AA-3510-01 6 80749452 80749452 T G TTK Missense_Mutation p.L724V 0.35 deleterious(0) probably_damaging(0.985) TCGA-AA-3510-01 6 84233353 84233353 G A PRSS35 Missense_Mutation p.E65K 0.29 deleterious(0) probably_damaging(0.988) TCGA-AA-3510-01 6 84350859 84350859 G T SNAP91 Missense_Mutation p.L241I 0.10 deleterious(0) unknown(0) TCGA-AA-3510-01 6 84366474 84366474 G A SNAP91 Silent p.L219L 0.42 TCGA-AA-3510-01 6 84834744 84834744 A C KIAA1009 3'UTR 0.27 TCGA-AA-3510-01 6 84894937 84894937 G A KIAA1009 Missense_Mutation p.S544L 0.35 tolerated(0.07) benign(0.337) TCGA-AA-3510-01 6 85446237 85446237 G A TBX18 3'UTR 0.29 TCGA-AA-3510-01 6 85473713 85473713 C T TBX18 Missense_Mutation p.E63K 0.42 tolerated(0.36) benign(0.004) TCGA-AA-3510-01 6 86324345 86324345 G A SYNCRIP 3'UTR 0.24 TCGA-AA-3510-01 6 87993997 87993997 G T GJB7 Missense_Mutation p.Q212K 0.23 tolerated(0.85) benign(0.001) TCGA-AA-3510-01 6 87994329 87994329 C T GJB7 Missense_Mutation p.R101K 0.37 tolerated(0.41) possibly_damaging(0.897) TCGA-AA-3510-01 6 88049854 88049854 C T SMIM8 Silent p.F52F 0.43 TCGA-AA-3510-01 6 88853780 88853780 C T CNR1 Missense_Mutation p.R405Q 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3510-01 6 90334277 90334277 G A ANKRD6 Missense_Mutation p.R413Q 0.29 tolerated(0.08) possibly_damaging(0.611) TCGA-AA-3510-01 6 90353807 90353807 G A MDN1 Nonsense_Mutation p.R5570* 0.27 TCGA-AA-3510-01 6 90513254 90513254 C T MDN1 Missense_Mutation p.R41H 0.12 possibly_damaging(0.714) TCGA-AA-3510-01 6 90576595 90576595 T G CASP8AP2 RNA 0.29 TCGA-AA-3510-01 6 90578784 90578784 T G CASP8AP2 RNA 0.36 TCGA-AA-3510-01 6 90605509 90605509 G A GJA10 Missense_Mutation p.R441Q 0.37 tolerated(0.08) benign(0.037) TCGA-AA-3510-01 6 96652014 96652014 G A FUT9 Missense_Mutation p.R328Q 0.31 tolerated(0.58) benign(0.001) TCGA-AA-3510-01 6 96653126 96653126 T C FUT9 3'UTR 0.45 TCGA-AA-3510-01 6 96658962 96658962 T G FUT9 3'UTR 0.29 TCGA-AA-3510-01 6 96660895 96660895 C A FUT9 3'UTR 0.27 TCGA-AA-3510-01 6 96663439 96663439 G T FUT9 3'UTR 0.32 TCGA-AA-3510-01 6 97246292 97246292 G T GPR63 3'UTR 0.37 TCGA-AA-3510-01 6 99771429 99771429 C T FAXC Silent p.T238T 0.34 TCGA-AA-3510-01 6 99797147 99797147 C T FAXC Silent p.E34E 0.30 TCGA-AA-3510-01 7 100001806 100001806 C A ZCWPW1 Missense_Mutation p.R438I 0.40 deleterious(0.04) benign(0.284) TCGA-AA-3510-01 7 100224902 100224902 G T TFR2 Missense_Mutation p.F660L 0.20 deleterious(0.04) benign(0.066) TCGA-AA-3510-01 7 100282432 100282432 C T GIGYF1 Missense_Mutation p.R459H 0.13 deleterious(0.02) unknown(0) TCGA-AA-3510-01 7 100350396 100350396 G T ZAN Nonsense_Mutation p.E890* 0.30 TCGA-AA-3510-01 7 100732289 100732289 G A TRIM56 Missense_Mutation p.A566T 0.35 deleterious(0) possibly_damaging(0.651) TCGA-AA-3510-01 7 100839509 100839509 G T MOGAT3 Missense_Mutation p.S277Y 0.37 deleterious(0) possibly_damaging(0.851) TCGA-AA-3510-01 7 102087389 102087389 T C ORAI2 Missense_Mutation p.Y219H 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 7 102738803 102738803 C T ARMC10 Nonsense_Mutation p.R279* 0.26 TCGA-AA-3510-01 7 102953126 102953126 G A PMPCB 3'UTR 0.28 TCGA-AA-3510-01 7 103629633 103629633 A G RELN Silent p.I57I 0.34 TCGA-AA-3510-01 7 104546676 104546676 C T LHFPL3 3'UTR 0.31 TCGA-AA-3510-01 7 104546716 104546716 C T LHFPL3 3'UTR 0.35 TCGA-AA-3510-01 7 105662716 105662716 G A CDHR3 Missense_Mutation p.R633H 0.32 tolerated(0.14) benign(0.003) TCGA-AA-3510-01 7 107115839 107115839 C A GPR22 3'UTR 0.24 TCGA-AA-3510-01 7 107427948 107427948 A G SLC26A3 Missense_Mutation p.Y248H 0.38 tolerated(0.16) benign(0) TCGA-AA-3510-01 7 107807429 107807429 G A NRCAM Nonsense_Mutation p.R1135* 0.24 TCGA-AA-3510-01 7 1098872 1098872 G T GPR146 3'UTR 0.23 TCGA-AA-3510-01 7 110764893 110764893 G T LRRN3 Nonsense_Mutation p.E689* 0.27 TCGA-AA-3510-01 7 111368516 111368516 G T DOCK4 Silent p.V1905V 0.25 TCGA-AA-3510-01 7 111503367 111503367 G A DOCK4 Intron 0.10 TCGA-AA-3510-01 7 112461985 112461985 G A C7orf60 Silent p.F344F 0.33 TCGA-AA-3510-01 7 112723770 112723770 G A GPR85 Missense_Mutation p.P336L 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 7 112724142 112724142 C T GPR85 Missense_Mutation p.R212Q 0.12 deleterious(0.02) possibly_damaging(0.895) TCGA-AA-3510-01 7 113519146 113519146 C A PPP1R3A Missense_Mutation p.E667D 0.09 tolerated(0.12) possibly_damaging(0.678) TCGA-AA-3510-01 7 113522108 113522108 C A PPP1R3A Nonsense_Mutation p.E318* 0.26 TCGA-AA-3510-01 7 11441507 11441507 C T THSD7A Silent p.Q1442Q 0.34 TCGA-AA-3510-01 7 115614228 115614228 C A TFEC Missense_Mutation p.R88I 0.24 tolerated(0.06) benign(0.14) TCGA-AA-3510-01 7 117246747 117246747 C A CFTR Missense_Mutation p.F976L 0.09 deleterious(0.01) probably_damaging(0.958) TCGA-AA-3510-01 7 117282581 117282581 C T CFTR Silent p.I1269I 0.42 TCGA-AA-3510-01 7 117375403 117375403 G T CTTNBP2 Missense_Mutation p.S1203Y 0.41 deleterious(0.01) possibly_damaging(0.691) TCGA-AA-3510-01 7 119915211 119915211 C T KCND2 Silent p.F175F 0.25 TCGA-AA-3510-01 7 119915529 119915529 C T KCND2 Silent p.D281D 0.33 TCGA-AA-3510-01 7 121650643 121650643 G A PTPRZ1 Missense_Mutation p.D515N 0.38 tolerated(0.13) benign(0.051) TCGA-AA-3510-01 7 121651597 121651597 C T PTPRZ1 Missense_Mutation p.R833C 0.29 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-AA-3510-01 7 121942370 121942370 T G FEZF1 Missense_Mutation p.K370T 0.12 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 7 121942948 121942948 A C FEZF1 Missense_Mutation p.F325C 0.30 deleterious(0) possibly_damaging(0.905) TCGA-AA-3510-01 7 122338015 122338015 G T RNF133 Missense_Mutation p.L320I 0.36 tolerated(0.45) benign(0.153) TCGA-AA-3510-01 7 123152377 123152377 C A IQUB Missense_Mutation p.E6D 0.17 tolerated_low_confidence(0.14) benign(0.015) TCGA-AA-3510-01 7 123346345 123346345 C T WASL Missense_Mutation p.R141Q 0.28 deleterious(0) unknown(0) TCGA-AA-3510-01 7 123599766 123599766 G T SPAM1 Missense_Mutation p.D425Y 0.09 deleterious(0.01) probably_damaging(0.924) TCGA-AA-3510-01 7 12383912 12383912 A C VWDE Silent p.L1329L 0.31 TCGA-AA-3510-01 7 124386647 124386647 C T GPR37 Missense_Mutation p.E592K 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-AA-3510-01 7 124404287 124404287 C A GPR37 Missense_Mutation p.K248N 0.37 tolerated(0.07) possibly_damaging(0.827) TCGA-AA-3510-01 7 124469334 124469334 G A POT1 Missense_Mutation p.S523L 0.10 tolerated(0.28) benign(0.116) TCGA-AA-3510-01 7 127669324 127669324 A G LRRC4 Missense_Mutation p.V457A 0.07 deleterious(0.03) benign(0.41) TCGA-AA-3510-01 7 128097518 128097518 G A HILPDA 3'UTR 0.36 TCGA-AA-3510-01 7 128097876 128097876 G T HILPDA 3'UTR 0.41 TCGA-AA-3510-01 7 128415544 128415544 C T OPN1SW Missense_Mutation p.V101I 0.39 tolerated(0.37) benign(0.004) TCGA-AA-3510-01 7 128434639 128434639 A G CCDC136 Missense_Mutation p.D85G 0.22 deleterious(0.01) probably_damaging(1) TCGA-AA-3510-01 7 128441252 128441252 C T CCDC136 Missense_Mutation p.S120F 0.25 deleterious(0.01) possibly_damaging(0.859) TCGA-AA-3510-01 7 128477523 128477523 C T FLNC Silent p.F257F 0.34 TCGA-AA-3510-01 7 128767680 128767680 G A RP11-286H14.4 RNA 0.18 TCGA-AA-3510-01 7 129028979 129028979 C A AHCYL2 Missense_Mutation p.F186L 0.35 deleterious(0.04) probably_damaging(0.956) TCGA-AA-3510-01 7 129832663 129832663 A C TMEM209 Missense_Mutation p.L192V 0.15 tolerated(0.51) benign(0.002) TCGA-AA-3510-01 7 130025046 130025046 G A CPA1 Missense_Mutation p.E283K 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 7 131149119 131149119 A C MKLN1 Missense_Mutation p.E580D 0.30 deleterious(0) probably_damaging(0.954) TCGA-AA-3510-01 7 131194202 131194202 G A PODXL Silent p.S315S 0.33 TCGA-AA-3510-01 7 133812191 133812191 G A LRGUK Missense_Mutation p.R24Q 0.42 tolerated_low_confidence(0.15) unknown(0) TCGA-AA-3510-01 7 133948607 133948607 A G LRGUK Missense_Mutation p.I786M 0.10 tolerated(0.22) benign(0.005) TCGA-AA-3510-01 7 134133183 134133183 G A AKR1B1 Silent p.I205I 0.18 TCGA-AA-3510-01 7 134221832 134221832 G T AKR1B10 Missense_Mutation p.E194D 0.53 tolerated(0.07) benign(0.013) TCGA-AA-3510-01 7 134250267 134250267 A C AKR1B15 Intron 0.35 TCGA-AA-3510-01 7 134632503 134632503 C T CALD1 Nonsense_Mutation p.R593* 0.21 TCGA-AA-3510-01 7 134761183 134761183 C A AGBL3 Missense_Mutation p.S648Y 0.35 deleterious(0) possibly_damaging(0.865) TCGA-AA-3510-01 7 135261103 135261103 G A NUP205 Silent p.A143A 0.28 TCGA-AA-3510-01 7 135310092 135310092 G T NUP205 Nonsense_Mutation p.E1554* 0.35 TCGA-AA-3510-01 7 136699792 136699792 C A CHRM2 Nonsense_Mutation p.Y60* 0.09 TCGA-AA-3510-01 7 136700366 136700366 G T CHRM2 Missense_Mutation p.D252Y 0.26 tolerated(0.14) benign(0.255) TCGA-AA-3510-01 7 136700566 136700566 G A CHRM2 Silent p.E318E 0.35 TCGA-AA-3510-01 7 137263038 137263038 C T DGKI Missense_Mutation p.R559Q 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3510-01 7 138356791 138356791 C A SVOPL Missense_Mutation p.E82D 0.30 tolerated(0.16) benign(0.033) TCGA-AA-3510-01 7 138764961 138764961 T C ZC3HAV1 Silent p.A242A 0.16 TCGA-AA-3510-01 7 141463935 141463935 G T TAS2R3 5'UTR 0.19 TCGA-AA-3510-01 7 141619539 141619539 C A OR9A4 Missense_Mutation p.F288L 0.30 deleterious(0.02) benign(0.071) TCGA-AA-3510-01 7 141645175 141645175 G A CLEC5A Silent p.N35N 0.27 TCGA-AA-3510-01 7 141750572 141750572 C A MGAM Missense_Mutation p.L905I 0.31 deleterious(0.02) benign(0.05) TCGA-AA-3510-01 7 142566461 142566461 C A EPHB6 Missense_Mutation p.F750L 0.37 tolerated(0.24) benign(0.002) TCGA-AA-3510-01 7 142569581 142569581 C T TRPV6 Missense_Mutation p.R686Q 0.35 tolerated(0.07) probably_damaging(0.957) TCGA-AA-3510-01 7 142639534 142639534 C T KEL Missense_Mutation p.R675Q 0.47 tolerated(0.09) benign(0.023) TCGA-AA-3510-01 7 142881071 142881071 C A TAS2R39 Missense_Mutation p.S187Y 0.33 deleterious(0.02) benign(0.286) TCGA-AA-3510-01 7 143929610 143929610 G A OR2A42 Silent p.S109S 0.58 TCGA-AA-3510-01 7 144098495 144098496 - G NOBOX Frame_Shift_Ins p.R163Pfs*48 0.31 TCGA-AA-3510-01 7 147600729 147600729 G T CNTNAP2 Missense_Mutation p.G724V 0.13 deleterious(0.01) benign(0.291) TCGA-AA-3510-01 7 147815335 147815335 C A CNTNAP2 Missense_Mutation p.L837I 0.47 deleterious(0.02) probably_damaging(0.958) TCGA-AA-3510-01 7 148511161 148511161 C T EZH2 Missense_Mutation p.A581T 0.29 deleterious(0) benign(0.287) TCGA-AA-3510-01 7 14880850 14880850 C T DGKB Silent p.S13S 0.11 TCGA-AA-3510-01 7 148909458 148909458 A G ZNF282 Missense_Mutation p.I321V 0.41 tolerated(0.43) benign(0.004) TCGA-AA-3510-01 7 148947266 148947266 G A ZNF212 Missense_Mutation p.R14H 0.41 tolerated(0.14) benign(0.012) TCGA-AA-3510-01 7 149152337 149152337 C A ZNF777 Missense_Mutation p.E259D 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 7 149422526 149422526 G A KRBA1 Missense_Mutation p.G416E 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3510-01 7 149492359 149492359 C T SSPO RNA 0.35 TCGA-AA-3510-01 7 149547315 149547315 C T ZNF862 Silent p.F335F 0.33 TCGA-AA-3510-01 7 149992388 149992388 T G ACTR3C 5'UTR 0.29 TCGA-AA-3510-01 7 150070995 150070995 T C REPIN1 3'Flank 0.30 TCGA-AA-3510-01 7 150164371 150164371 G A GIMAP8 Silent p.T195T 0.24 TCGA-AA-3510-01 7 150704192 150704192 T G NOS3 Missense_Mutation p.F647C 0.51 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 7 150720984 150720984 A T ATG9B Missense_Mutation p.L176H 0.33 deleterious(0.05) probably_damaging(1) TCGA-AA-3510-01 7 151716805 151716805 G T GALNTL5 Missense_Mutation p.R417S 0.24 deleterious(0.02) probably_damaging(0.962) TCGA-AA-3510-01 7 151797897 151797897 G T GALNT11 Nonsense_Mutation p.E104* 0.35 TCGA-AA-3510-01 7 151842334 151842334 C T KMT2C Missense_Mutation p.R4693Q 0.13 probably_damaging(0.999) TCGA-AA-3510-01 7 151921127 151921127 A C KMT2C Missense_Mutation p.L1099R 0.31 probably_damaging(0.998) TCGA-AA-3510-01 7 151949112 151949112 C T KMT2C Silent p.E511E 0.22 TCGA-AA-3510-01 7 154237702 154237703 - A DPP6 Frame_Shift_Ins p.I184Nfs*2 0.41 TCGA-AA-3510-01 7 154860936 154860936 C T HTR5A-AS1 3'UTR 0.22 TCGA-AA-3510-01 7 154862922 154862922 C T HTR5A-AS1 Missense_Mutation p.R31H 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-AA-3510-01 7 154876173 154876173 G T HTR5A Missense_Mutation p.K350N 0.34 deleterious(0.03) benign(0.08) TCGA-AA-3510-01 7 155187854 155187854 C T AC008060.7 Silent p.G102G 0.32 TCGA-AA-3510-01 7 155599210 155599210 C A SHH Missense_Mutation p.M114I 0.37 deleterious(0.02) benign(0.408) TCGA-AA-3510-01 7 15599877 15599877 G T AGMO Missense_Mutation p.S49Y 0.42 tolerated(1) benign(0.092) TCGA-AA-3510-01 7 156745171 156745171 C A NOM1 Missense_Mutation p.L331I 0.33 tolerated(0.34) benign(0.029) TCGA-AA-3510-01 7 158716288 158716288 G T WDR60 Missense_Mutation p.L707F 0.27 tolerated(0.75) benign(0) TCGA-AA-3510-01 7 17836500 17836500 C T SNX13 Missense_Mutation p.R859Q 0.24 deleterious(0.03) benign(0.18) TCGA-AA-3510-01 7 1784085 1784085 C T ELFN1 5'UTR 0.41 TCGA-AA-3510-01 7 1787119 1787119 G T ELFN1 3'UTR 0.14 TCGA-AA-3510-01 7 18687413 18687413 G A HDAC9 Silent p.S347S 0.39 TCGA-AA-3510-01 7 19184518 19184518 G A FERD3L Silent p.L156L 0.27 TCGA-AA-3510-01 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.32 tolerated(0.11) benign(0.16) TCGA-AA-3510-01 7 21640653 21640653 T C DNAH11 Missense_Mutation p.V1094A 0.24 benign(0.001) TCGA-AA-3510-01 7 21640667 21640667 T G DNAH11 Missense_Mutation p.F1099V 0.43 benign(0.138) TCGA-AA-3510-01 7 21675658 21675658 G A DNAH11 Missense_Mutation p.R1562Q 0.36 benign(0.045) TCGA-AA-3510-01 7 21757528 21757529 - C DNAH11 Frame_Shift_Ins p.S2381Qfs*2 0.11 TCGA-AA-3510-01 7 21765526 21765526 A G DNAH11 Missense_Mutation p.D2462G 0.37 probably_damaging(1) TCGA-AA-3510-01 7 21906112 21906112 C T DNAH11 Nonsense_Mutation p.R3848* 0.08 TCGA-AA-3510-01 7 22478140 22478140 C A STEAP1B Missense_Mutation p.D333Y 0.23 unknown(0) TCGA-AA-3510-01 7 23000873 23000873 A C FAM126A Nonsense_Mutation p.L271* 0.33 TCGA-AA-3510-01 7 23239826 23239826 A C NUPL2 Missense_Mutation p.N245T 0.42 tolerated(1) benign(0.099) TCGA-AA-3510-01 7 26412202 26412202 C A SNX10 3'UTR 0.45 TCGA-AA-3510-01 7 26576360 26576360 A C KIAA0087 3'UTR 0.26 TCGA-AA-3510-01 7 27194695 27194695 T G HOXA7 Missense_Mutation p.I176L 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-AA-3510-01 7 27219374 27219374 C A RP1-170O19.20 5'UTR 0.22 TCGA-AA-3510-01 7 27224125 27224125 C T HOXA11 Silent p.R213R 0.39 TCGA-AA-3510-01 7 30058685 30058685 C T FKBP14 Missense_Mutation p.R135Q 0.16 tolerated(0.4) benign(0.421) TCGA-AA-3510-01 7 31135296 31135296 G A ADCYAP1R1 Intron 0.26 TCGA-AA-3510-01 7 31378581 31378581 G A NEUROD6 Missense_Mutation p.A101V 0.35 deleterious(0) benign(0.024) TCGA-AA-3510-01 7 3186876 3186876 T C AC091801.1 Intron 0.45 TCGA-AA-3510-01 7 36713609 36713609 G T AOAH Missense_Mutation p.L77M 0.27 tolerated(0.06) possibly_damaging(0.907) TCGA-AA-3510-01 7 37951817 37951817 C T SFRP4 Missense_Mutation p.R232Q 0.36 tolerated(0.15) benign(0.035) TCGA-AA-3510-01 7 38279500 38279500 G A TRGC2 3'UTR 0.26 TCGA-AA-3510-01 7 39745749 39745749 C T RALA Nonsense_Mutation p.R176* 0.40 TCGA-AA-3510-01 7 40134599 40134599 C T CDK13 3'UTR 0.27 TCGA-AA-3510-01 7 40314127 40314127 C T SUGCT Missense_Mutation p.R205C 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 7 42004153 42004153 G A GLI3 Silent p.F1506F 0.45 TCGA-AA-3510-01 7 4281452 4281452 C A SDK1 Missense_Mutation p.S2053Y 0.22 deleterious(0.02) benign(0.212) TCGA-AA-3510-01 7 42959146 42959146 T G PSMA2 Intron 0.31 TCGA-AA-3510-01 7 44102513 44102513 C T PGAM2 Silent p.A204A 0.27 TCGA-AA-3510-01 7 44573442 44573442 C T NPC1L1 Missense_Mutation p.R726Q 0.35 deleterious(0.04) possibly_damaging(0.477) TCGA-AA-3510-01 7 44575864 44575864 G T NPC1L1 Missense_Mutation p.F615L 0.14 deleterious(0) benign(0.354) TCGA-AA-3510-01 7 45010211 45010211 G A MYO1G Silent p.F399F 0.23 TCGA-AA-3510-01 7 45222997 45222997 G A RAMP3 Missense_Mutation p.D145N 0.36 deleterious(0) probably_damaging(0.945) TCGA-AA-3510-01 7 47317673 47317673 C A TNS3 3'UTR 0.34 TCGA-AA-3510-01 7 47342932 47342932 C T TNS3 Missense_Mutation p.A1025T 0.17 tolerated(0.24) benign(0.005) TCGA-AA-3510-01 7 47870905 47870905 G A PKD1L1 Missense_Mutation p.A2128V 0.34 tolerated(0.54) benign(0.057) TCGA-AA-3510-01 7 47894524 47894524 A C PKD1L1 Missense_Mutation p.F1605L 0.34 deleterious(0) possibly_damaging(0.87) TCGA-AA-3510-01 7 47894617 47894617 C T PKD1L1 Silent p.T1574T 0.10 TCGA-AA-3510-01 7 48018188 48018188 C A HUS1 Missense_Mutation p.E61D 0.22 tolerated(0.51) benign(0.144) TCGA-AA-3510-01 7 48035633 48035633 G T SUN3 Missense_Mutation p.L230I 0.30 tolerated(0.31) probably_damaging(0.964) TCGA-AA-3510-01 7 48259073 48259073 G T ABCA13 Missense_Mutation p.R137I 0.09 benign(0.101) TCGA-AA-3510-01 7 4830402 4830402 C T AP5Z1 Silent p.F679F 0.29 TCGA-AA-3510-01 7 48316143 48316143 G T ABCA13 Missense_Mutation p.D2294Y 0.40 probably_damaging(0.91) TCGA-AA-3510-01 7 48559715 48559715 G T ABCA13 Nonsense_Mutation p.E4626* 0.07 TCGA-AA-3510-01 7 4862121 4862121 G T RADIL Missense_Mutation p.L507I 0.13 tolerated(0.13) benign(0.222) TCGA-AA-3510-01 7 4901111 4901111 T G PAPOLB Missense_Mutation p.K110Q 0.32 deleterious(0) possibly_damaging(0.514) TCGA-AA-3510-01 7 50070900 50070900 C T ZPBP Missense_Mutation p.R165H 0.13 deleterious(0.02) probably_damaging(0.952) TCGA-AA-3510-01 7 50514304 50514304 T G FIGNL1 Missense_Mutation p.N228H 0.34 tolerated(0.25) benign(0.004) TCGA-AA-3510-01 7 51096169 51096169 C T COBL Missense_Mutation p.R875H 0.40 tolerated(0.35) benign(0.04) TCGA-AA-3510-01 7 5262287 5262287 C T WIPI2 Missense_Mutation p.R242W 0.26 deleterious(0) benign(0.433) TCGA-AA-3510-01 7 5401255 5401255 T C TNRC18 Missense_Mutation p.K1544R 0.26 possibly_damaging(0.658) TCGA-AA-3510-01 7 54617880 54617880 C T VSTM2A Intron 0.39 TCGA-AA-3510-01 7 54637080 54637080 C T VSTM2A 3'UTR 0.47 TCGA-AA-3510-01 7 558614 558614 G A PDGFA Missense_Mutation p.L9F 0.27 tolerated(0.15) benign(0.055) TCGA-AA-3510-01 7 6005298 6005298 G A RSPH10B Silent p.F100F 0.08 TCGA-AA-3510-01 7 6045569 6045569 T C PMS2 Silent p.V39V 0.43 TCGA-AA-3510-01 7 63529893 63529893 T G ZNF727 Silent p.G44G 0.12 TCGA-AA-3510-01 7 63538674 63538674 G T ZNF727 Missense_Mutation p.R416I 0.31 tolerated(0.47) probably_damaging(0.944) TCGA-AA-3510-01 7 64167226 64167226 C A ZNF107 Missense_Mutation p.H182N 0.33 deleterious(0.01) possibly_damaging(0.745) TCGA-AA-3510-01 7 64168917 64168917 G T ZNF107 Missense_Mutation p.E745D 0.34 tolerated(0.05) benign(0.037) TCGA-AA-3510-01 7 64438236 64438236 G T ZNF117 3'UTR 0.21 TCGA-AA-3510-01 7 64439695 64439695 T G ZNF117 Missense_Mutation p.K85T 0.24 tolerated(0.07) benign(0.02) TCGA-AA-3510-01 7 64863304 64863304 G T ZNF92 Missense_Mutation p.D93Y 0.41 deleterious(0.04) possibly_damaging(0.656) TCGA-AA-3510-01 7 64863708 64863708 A G ZNF92 Silent p.K227K 0.30 TCGA-AA-3510-01 7 64864450 64864450 C A ZNF92 Missense_Mutation p.H475N 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3510-01 7 65154292 65154292 C T INTS4L2 RNA 0.53 TCGA-AA-3510-01 7 65225412 65225412 C T SNORA22 3'Flank 0.31 TCGA-AA-3510-01 7 6541413 6541413 G A GRID2IP Missense_Mutation p.S1133L 0.30 deleterious(0.01) benign(0.067) TCGA-AA-3510-01 7 66648120 66648120 G A TYW1 Missense_Mutation p.R569Q 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 7 71275475 71275475 A G CALN1 Silent p.F168F 0.39 TCGA-AA-3510-01 7 72727384 72727384 C T TRIM50 Missense_Mutation p.D333N 0.32 tolerated(0.06) benign(0.129) TCGA-AA-3510-01 7 72743423 72743423 A C FKBP6 Missense_Mutation p.K79T 0.39 deleterious(0) possibly_damaging(0.765) TCGA-AA-3510-01 7 72755320 72755320 C T FKBP6 Nonsense_Mutation p.R278* 0.38 TCGA-AA-3510-01 7 73038624 73038624 C G MLXIPL Missense_Mutation p.D67H 0.25 tolerated(0.45) probably_damaging(0.984) TCGA-AA-3510-01 7 74195135 74195135 G T NCF1 Missense_Mutation p.K135N 0.38 deleterious(0.03) benign(0.026) TCGA-AA-3510-01 7 74237282 74237282 G A GTF2IRD2 Nonsense_Mutation p.R138* 0.23 TCGA-AA-3510-01 7 7636027 7636027 G A MIOS Missense_Mutation p.R779Q 0.20 deleterious(0) probably_damaging(0.991) TCGA-AA-3510-01 7 77256279 77256279 A C PTPN12 Missense_Mutation p.K428T 0.27 tolerated(0.17) possibly_damaging(0.76) TCGA-AA-3510-01 7 78636481 78636481 G A MAGI2 Nonsense_Mutation p.R115* 0.23 TCGA-AA-3510-01 7 81635143 81635143 G T CACNA2D1 Missense_Mutation p.L485I 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 7 82545961 82545961 G A PCLO Nonsense_Mutation p.R3781* 0.08 TCGA-AA-3510-01 7 82580230 82580230 T G PCLO Missense_Mutation p.K3225T 0.30 unknown(0) TCGA-AA-3510-01 7 82582136 82582136 C T PCLO Silent p.E2711E 0.30 TCGA-AA-3510-01 7 83025977 83025977 G T SEMA3E Missense_Mutation p.L479I 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 7 83631324 83631324 C T SEMA3A Missense_Mutation p.E467K 0.38 tolerated(0.43) benign(0.168) TCGA-AA-3510-01 7 83764139 83764139 C T SEMA3A Missense_Mutation p.D81N 0.14 tolerated(0.58) benign(0.003) TCGA-AA-3510-01 7 86469129 86469129 G A GRM3 Missense_Mutation p.E767K 0.33 deleterious(0) probably_damaging(0.989) TCGA-AA-3510-01 7 86826042 86826042 C T TMEM243 Silent p.P89P 0.15 TCGA-AA-3510-01 7 87046648 87046648 C A ABCB4 Nonsense_Mutation p.E888* 0.41 TCGA-AA-3510-01 7 87179797 87179797 C T ABCB1 Missense_Mutation p.R404Q 0.28 deleterious(0) probably_damaging(0.983) TCGA-AA-3510-01 7 8791132 8791132 G T NXPH1 Silent p.V183V 0.25 TCGA-AA-3510-01 7 883373 883373 T G SUN1 Intron 0.16 TCGA-AA-3510-01 7 88962813 88962813 C A ZNF804B Missense_Mutation p.L173I 0.22 tolerated(0.31) benign(0.038) TCGA-AA-3510-01 7 88966256 88966256 T C ZNF804B Silent p.G1320G 0.08 TCGA-AA-3510-01 7 89753427 89753427 C A RP5-1121E10.2 5'Flank 0.19 TCGA-AA-3510-01 7 89854539 89854539 G A STEAP2 Missense_Mutation p.R48Q 0.14 deleterious(0) probably_damaging(0.947) TCGA-AA-3510-01 7 89909000 89909000 G T C7orf63 Missense_Mutation p.D389Y 0.50 deleterious(0) benign(0.277) TCGA-AA-3510-01 7 90897516 90897516 G A FZD1 3'UTR 0.32 TCGA-AA-3510-01 7 91630260 91630260 G T AKAP9 Missense_Mutation p.K343N 0.33 benign(0.394) TCGA-AA-3510-01 7 91774357 91774357 C A LRRD1 Missense_Mutation p.A810S 0.37 deleterious(0) benign(0.424) TCGA-AA-3510-01 7 91793016 91793016 C A LRRD1 Nonsense_Mutation p.E501* 0.09 TCGA-AA-3510-01 7 91793292 91793292 C T LRRD1 Missense_Mutation p.E409K 0.29 tolerated(0.24) benign(0.026) TCGA-AA-3510-01 7 92730609 92730609 G T SAMD9 3'UTR 0.29 TCGA-AA-3510-01 7 92731165 92731165 G A SAMD9 Nonsense_Mutation p.R1416* 0.31 TCGA-AA-3510-01 7 92733306 92733306 G T SAMD9 Missense_Mutation p.S702Y 0.33 deleterious(0) possibly_damaging(0.55) TCGA-AA-3510-01 7 92735166 92735166 G A SAMD9 Missense_Mutation p.S82L 0.36 tolerated(0.31) benign(0.001) TCGA-AA-3510-01 7 94232715 94232715 C A SGCE Nonsense_Mutation p.E238* 0.07 TCGA-AA-3510-01 7 94295131 94295131 G A PEG10 3'UTR 0.23 TCGA-AA-3510-01 7 94295460 94295460 C T PEG10 3'UTR 0.30 TCGA-AA-3510-01 7 94540298 94540298 G A PPP1R9A Silent p.S291S 0.37 TCGA-AA-3510-01 7 94928407 94928407 C T PON1 Missense_Mutation p.R306Q 0.36 tolerated(0.13) benign(0.002) TCGA-AA-3510-01 7 94993247 94993247 C T PON3 Missense_Mutation p.S208N 0.30 tolerated(0.07) possibly_damaging(0.808) TCGA-AA-3510-01 7 95125353 95125353 G A ASB4 Silent p.K157K 0.20 TCGA-AA-3510-01 7 95157129 95157129 G A ASB4 Silent p.A164A 0.35 TCGA-AA-3510-01 7 98608994 98608994 C T TRRAP Nonsense_Mutation p.R3711* 0.35 TCGA-AA-3510-01 7 99145471 99145471 A C FAM200A Nonsense_Mutation p.L187* 0.19 TCGA-AA-3510-01 7 99441779 99441779 C T CYP3A43 Nonsense_Mutation p.Q78* 0.23 TCGA-AA-3510-01 7 99506340 99506340 C A TRIM4 Missense_Mutation p.L221F 0.39 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 7 99566013 99566013 C A AZGP1 Missense_Mutation p.E126D 0.44 tolerated(0.65) benign(0.009) TCGA-AA-3510-01 7 99669475 99669475 C T ZNF3 Missense_Mutation p.R211Q 0.20 tolerated(0.92) benign(0.042) TCGA-AA-3510-01 8 100779059 100779059 G A VPS13B Missense_Mutation p.E2395K 0.31 tolerated(0.12) possibly_damaging(0.636) TCGA-AA-3510-01 8 100974929 100974929 G A RGS22 Missense_Mutation p.A1259V 0.31 tolerated_low_confidence(0.22) benign(0.015) TCGA-AA-3510-01 8 101075734 101075734 A C RGS22 Missense_Mutation p.F421C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 8 104709356 104709356 G T RIMS2 Missense_Mutation p.K73N 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3510-01 8 104897787 104897787 C T RIMS2 Silent p.Y320Y 0.29 TCGA-AA-3510-01 8 10530206 10530206 G T C8orf74 Nonsense_Mutation p.E11* 0.37 TCGA-AA-3510-01 8 10532277 10532277 G A C8orf74 Missense_Mutation p.G57D 0.35 tolerated(0.11) benign(0.258) TCGA-AA-3510-01 8 105507489 105507489 G T LRP12 Intron 0.24 TCGA-AA-3510-01 8 106811028 106811028 C T ZFPM2 Silent p.Y272Y 0.27 TCGA-AA-3510-01 8 106814844 106814844 C T ZFPM2 Missense_Mutation p.T845M 0.28 tolerated(0.09) benign(0.24) TCGA-AA-3510-01 8 107752665 107752665 G A OXR1 Missense_Mutation p.R754Q 0.59 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 8 113318252 113318252 C T CSMD3 Silent p.K2685K 0.27 TCGA-AA-3510-01 8 113420640 113420640 C A CSMD3 Nonsense_Mutation p.E1838* 0.44 TCGA-AA-3510-01 8 11607622 11607622 C T GATA4 Silent p.S262S 0.37 TCGA-AA-3510-01 8 11615948 11615948 C A GATA4 Silent p.V431V 0.14 TCGA-AA-3510-01 8 116616594 116616594 C T TRPS1 Silent p.T534T 0.35 TCGA-AA-3510-01 8 116632090 116632090 C A TRPS1 Missense_Mutation p.D79Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-AA-3510-01 8 117868447 117868447 T C RAD21 Missense_Mutation p.N299D 0.38 tolerated(0.26) benign(0.132) TCGA-AA-3510-01 8 11994818 11994818 G A USP17L2 Silent p.S484S 0.15 TCGA-AA-3510-01 8 11994905 11994905 G A USP17L2 Silent p.V455V 0.33 TCGA-AA-3510-01 8 120638814 120638814 A C ENPP2 Missense_Mutation p.L95V 0.38 tolerated(0.57) probably_damaging(0.999) TCGA-AA-3510-01 8 120774770 120774770 C A TAF2 Nonsense_Mutation p.E815* 0.28 TCGA-AA-3510-01 8 121224738 121224738 A C COL14A1 Missense_Mutation p.N507H 0.37 tolerated(0.1) probably_damaging(1) TCGA-AA-3510-01 8 121408283 121408283 G A MRPL13 3'UTR 0.34 TCGA-AA-3510-01 8 123965624 123965624 C A ZHX2 Missense_Mutation p.S625Y 0.31 tolerated(0.23) benign(0.406) TCGA-AA-3510-01 8 124266322 124266322 G A ZHX1 Missense_Mutation p.S622L 0.22 tolerated(0.58) benign(0.002) TCGA-AA-3510-01 8 124266700 124266700 C T ZHX1 Missense_Mutation p.R496K 0.35 deleterious(0) probably_damaging(0.972) TCGA-AA-3510-01 8 124267529 124267529 C A ZHX1 Nonsense_Mutation p.E220* 0.34 TCGA-AA-3510-01 8 124658144 124658144 G A KLHL38 Silent p.G527G 0.24 TCGA-AA-3510-01 8 124811872 124811872 G A FAM91A1 Missense_Mutation p.R558Q 0.35 tolerated(0.08) benign(0.422) TCGA-AA-3510-01 8 125052133 125052133 T C FER1L6 Silent p.V825V 0.33 TCGA-AA-3510-01 8 125058031 125058031 G A FER1L6 Silent p.P871P 0.37 TCGA-AA-3510-01 8 12594469 12594469 G T LONRF1 Missense_Mutation p.L432I 0.08 tolerated(0.3) benign(0.184) TCGA-AA-3510-01 8 125989133 125989133 G T ZNF572 Missense_Mutation p.R208I 0.53 deleterious(0.01) probably_damaging(0.958) TCGA-AA-3510-01 8 125989721 125989721 G T ZNF572 Missense_Mutation p.R404I 0.20 deleterious(0.04) probably_damaging(0.95) TCGA-AA-3510-01 8 12880615 12880615 T G KIAA1456 3'UTR 0.33 TCGA-AA-3510-01 8 12884664 12884664 C T KIAA1456 3'UTR 0.26 TCGA-AA-3510-01 8 12887010 12887010 T G KIAA1456 3'UTR 0.27 TCGA-AA-3510-01 8 131880098 131880098 G T ADCY8 Missense_Mutation p.S735Y 0.48 tolerated(0.22) benign(0.001) TCGA-AA-3510-01 8 13259080 13259080 G A DLC1 Silent p.L358L 0.07 TCGA-AA-3510-01 8 132962331 132962331 G A EFR3A Missense_Mutation p.R161Q 0.24 tolerated(0.1) benign(0.077) TCGA-AA-3510-01 8 132998447 132998447 G T EFR3A Nonsense_Mutation p.E626* 0.32 TCGA-AA-3510-01 8 133090032 133090032 G A HHLA1 Missense_Mutation p.A407V 0.17 tolerated(0.29) benign(0.003) TCGA-AA-3510-01 8 133150208 133150208 C T KCNQ3 Missense_Mutation p.D542N 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 8 133806824 133806824 C A PHF20L1 Missense_Mutation p.F84L 0.37 tolerated(0.67) benign(0.005) TCGA-AA-3510-01 8 133858304 133858304 G C PHF20L1 3'UTR 0.46 TCGA-AA-3510-01 8 133911137 133911137 C T TG Silent p.F1104F 0.18 TCGA-AA-3510-01 8 134050764 134050764 C A SLA 3'UTR 0.33 TCGA-AA-3510-01 8 135490926 135490926 C G ZFAT Missense_Mutation p.M1177I 0.33 tolerated(0.1) possibly_damaging(0.535) TCGA-AA-3510-01 8 139155261 139155261 C T FAM135B Missense_Mutation p.R1211Q 0.25 deleterious(0) probably_damaging(0.909) TCGA-AA-3510-01 8 139380195 139380195 G A FAM135B Missense_Mutation p.S11L 0.47 deleterious(0) benign(0.075) TCGA-AA-3510-01 8 141828986 141828986 G A PTK2 Missense_Mutation p.A261V 0.42 deleterious(0.01) benign(0.312) TCGA-AA-3510-01 8 142178485 142178485 G A DENND3 Silent p.S632S 0.44 TCGA-AA-3510-01 8 143782013 143782013 C T LY6K Missense_Mutation p.A23V 0.15 tolerated(0.16) benign(0.084) TCGA-AA-3510-01 8 144620632 144620632 C T ZC3H3 Missense_Mutation p.R302Q 0.37 tolerated(0.06) benign(0.096) TCGA-AA-3510-01 8 145139718 145139718 C T GPAA1 Silent p.F368F 0.38 TCGA-AA-3510-01 8 145947487 145947487 T A ZNF251 Nonsense_Mutation p.K520* 0.11 TCGA-AA-3510-01 8 146067469 146067469 G T ZNF7 Missense_Mutation p.R326I 0.44 deleterious(0.02) probably_damaging(0.991) TCGA-AA-3510-01 8 146068068 146068068 G A ZNF7 Missense_Mutation p.E526K 0.17 tolerated(0.39) benign(0.086) TCGA-AA-3510-01 8 146156248 146156248 G A ZNF16 Missense_Mutation p.S642L 0.34 deleterious(0.01) benign(0.26) TCGA-AA-3510-01 8 146202106 146202106 C A ZNF252P RNA 0.29 TCGA-AA-3510-01 8 15519781 15519781 G T TUSC3 Missense_Mutation p.K228N 0.07 deleterious(0) possibly_damaging(0.77) TCGA-AA-3510-01 8 16035426 16035426 A C MSR1 Missense_Mutation p.D24E 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 8 16962925 16962925 C A MICU3 Missense_Mutation p.F363L 0.31 deleterious(0) probably_damaging(0.987) TCGA-AA-3510-01 8 16974027 16974027 T G MICU3 Missense_Mutation p.I481S 0.37 deleterious(0) possibly_damaging(0.898) TCGA-AA-3510-01 8 17396355 17396355 T G SLC7A2 Missense_Mutation p.Y8D 0.26 tolerated_low_confidence(0.27) benign(0) TCGA-AA-3510-01 8 17869254 17869254 A C PCM1 Missense_Mutation p.E1810A 0.34 deleterious(0.03) possibly_damaging(0.626) TCGA-AA-3510-01 8 1851601 1851601 A G ARHGEF10 Missense_Mutation p.E602G 0.15 tolerated(0.09) probably_damaging(0.94) TCGA-AA-3510-01 8 18662108 18662108 C T PSD3 Missense_Mutation p.E612K 0.33 deleterious(0) possibly_damaging(0.812) TCGA-AA-3510-01 8 2088724 2088724 G A MYOM2 Silent p.P1293P 0.17 TCGA-AA-3510-01 8 22031144 22031144 G A BMP1 Missense_Mutation p.E60K 0.30 deleterious(0.02) benign(0.041) TCGA-AA-3510-01 8 22460809 22460809 C A C8orf58 Missense_Mutation p.S363Y 0.33 deleterious(0) probably_damaging(0.939) TCGA-AA-3510-01 8 22548547 22548547 G A EGR3 Silent p.N201N 0.31 TCGA-AA-3510-01 8 23179724 23179724 G T LOXL2 Missense_Mutation p.F407L 0.41 tolerated(0.11) benign(0.077) TCGA-AA-3510-01 8 24259539 24259539 G T ADAMDEC1 Missense_Mutation p.M418I 0.30 tolerated(1) benign(0) TCGA-AA-3510-01 8 24324634 24324634 G T ADAM7 Intron 0.44 TCGA-AA-3510-01 8 25232161 25232161 G A DOCK5 Silent p.E1269E 0.39 TCGA-AA-3510-01 8 26196444 26196444 G T PPP2R2A Nonsense_Mutation p.E51* 0.28 TCGA-AA-3510-01 8 26237089 26237089 C A BNIP3L 5'Flank 0.29 TCGA-AA-3510-01 8 26238322 26238322 A C BNIP3L 5'Flank 0.29 TCGA-AA-3510-01 8 27098729 27098729 C T STMN4 Missense_Mutation p.E81K 0.32 tolerated(0.08) possibly_damaging(0.616) TCGA-AA-3510-01 8 27466562 27466562 G T CLU Missense_Mutation p.Q47K 0.16 tolerated(0.31) benign(0.004) TCGA-AA-3510-01 8 28588848 28588848 G A EXTL3 Missense_Mutation p.E753K 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 8 30210414 30210414 G T TUBBP1 RNA 0.23 TCGA-AA-3510-01 8 30361937 30361937 C A RBPMS Missense_Mutation p.F127L 0.31 tolerated(0.36) benign(0.025) TCGA-AA-3510-01 8 30690794 30690794 G T TEX15 3'UTR 0.18 TCGA-AA-3510-01 8 30695458 30695458 A C TEX15 Missense_Mutation p.L2398R 0.19 deleterious(0.02) possibly_damaging(0.804) TCGA-AA-3510-01 8 30701112 30701112 G T TEX15 Missense_Mutation p.L1808I 0.32 tolerated(0.06) probably_damaging(0.997) TCGA-AA-3510-01 8 30703577 30703577 G T TEX15 Missense_Mutation p.S986Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 8 30706445 30706445 G T TEX15 Missense_Mutation p.S30Y 0.26 deleterious(0.03) benign(0.179) TCGA-AA-3510-01 8 30889689 30889689 G A PURG Missense_Mutation p.R204W 0.28 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 8 3245076 3245076 C T CSMD1 Missense_Mutation p.D908N 0.21 benign(0.005) TCGA-AA-3510-01 8 32505273 32505273 G A NRG1 Intron 0.31 TCGA-AA-3510-01 8 35563451 35563451 A C UNC5D Missense_Mutation p.K363N 0.16 deleterious(0.04) benign(0.081) TCGA-AA-3510-01 8 35588592 35588592 T C UNC5D Missense_Mutation p.S582P 0.28 deleterious(0.01) benign(0.364) TCGA-AA-3510-01 8 37602157 37602157 G A ERLIN2 Missense_Mutation p.E123K 0.27 deleterious(0) benign(0.196) TCGA-AA-3510-01 8 37720431 37720431 T G RAB11FIP1 Missense_Mutation p.K1278N 0.34 tolerated(0.09) possibly_damaging(0.79) TCGA-AA-3510-01 8 38274874 38274874 A G FGFR1 Missense_Mutation p.I569T 0.34 deleterious(0) probably_damaging(0.984) TCGA-AA-3510-01 8 39634627 39634627 C A ADAM2 Missense_Mutation p.L315F 0.12 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 8 39785485 39785485 T G IDO1 Silent p.A331A 0.32 TCGA-AA-3510-01 8 40011631 40011631 C T C8orf4 3'UTR 0.23 TCGA-AA-3510-01 8 41467422 41467422 G A AGPAT6 Missense_Mutation p.V162I 0.18 tolerated(0.69) benign(0.001) TCGA-AA-3510-01 8 42025317 42025317 T G AP3M2 Missense_Mutation p.L382R 0.10 deleterious(0.04) possibly_damaging(0.857) TCGA-AA-3510-01 8 42552661 42552661 G A CHRNB3 5'UTR 0.42 TCGA-AA-3510-01 8 42563886 42563886 G A CHRNB3 Missense_Mutation p.E27K 0.30 tolerated(0.47) benign(0.267) TCGA-AA-3510-01 8 42911603 42911603 G T FNTA Missense_Mutation p.E38D 0.50 tolerated_low_confidence(0.32) unknown(0) TCGA-AA-3510-01 8 442583 442583 T C TDRP Missense_Mutation p.D125G 0.38 tolerated(0.11) benign(0.108) TCGA-AA-3510-01 8 48749969 48749969 C T PRKDC Missense_Mutation p.R2521Q 0.28 benign(0.405) TCGA-AA-3510-01 8 48887364 48887364 C A MCM4 Nonsense_Mutation p.S736* 0.39 TCGA-AA-3510-01 8 49637288 49637288 G A EFCAB1 3'UTR 0.16 TCGA-AA-3510-01 8 52321020 52321020 A C PXDNL Missense_Mutation p.F1055C 0.23 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 8 52744111 52744111 C T PCMTD1 Missense_Mutation p.R200Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 8 53055578 53055578 A C ST18 Missense_Mutation p.L694V 0.09 deleterious(0.01) benign(0.077) TCGA-AA-3510-01 8 53085139 53085139 T G ST18 Missense_Mutation p.E94D 0.27 tolerated(0.26) benign(0.003) TCGA-AA-3510-01 8 53569009 53569009 G T RB1CC1 Missense_Mutation p.T1127N 0.21 deleterious_low_confidence(0.01) benign(0.193) TCGA-AA-3510-01 8 55534076 55534076 C A RP1 Missense_Mutation p.L184I 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 8 55538476 55538476 G A RP1 Silent p.Q678Q 0.21 TCGA-AA-3510-01 8 55540616 55540616 A G RP1 Missense_Mutation p.N1392D 0.28 tolerated(0.06) possibly_damaging(0.717) TCGA-AA-3510-01 8 59352269 59352269 A C UBXN2B Missense_Mutation p.E204A 0.29 tolerated(0.08) possibly_damaging(0.664) TCGA-AA-3510-01 8 59404069 59404069 C A CYP7A1 Missense_Mutation p.D494Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 8 59728228 59728228 G T TOX Nonsense_Mutation p.S354* 0.33 TCGA-AA-3510-01 8 60031539 60031539 A G TOX Missense_Mutation p.V3A 0.22 deleterious(0) possibly_damaging(0.857) TCGA-AA-3510-01 8 61655557 61655557 C T CHD7 Silent p.G522G 0.36 TCGA-AA-3510-01 8 61769308 61769308 C T CHD7 Missense_Mutation p.S2490L 0.34 benign(0.41) TCGA-AA-3510-01 8 62212396 62212396 G T CLVS1 Missense_Mutation p.V4F 0.27 deleterious_low_confidence(0.02) benign(0.003) TCGA-AA-3510-01 8 62366806 62366806 A C CLVS1 Missense_Mutation p.K246T 0.33 tolerated(0.08) possibly_damaging(0.464) TCGA-AA-3510-01 8 62479857 62479857 C T ASPH Silent p.E390E 0.37 TCGA-AA-3510-01 8 62496584 62496584 C A ASPH Missense_Mutation p.K327N 0.37 deleterious(0.01) probably_damaging(0.939) TCGA-AA-3510-01 8 62550890 62550890 C A ASPH Nonsense_Mutation p.E275* 0.19 TCGA-AA-3510-01 8 64099516 64099516 G A YTHDF3 Missense_Mutation p.S315N 0.34 tolerated(0.43) benign(0) TCGA-AA-3510-01 8 65495209 65495209 A C BHLHE22 3'UTR 0.20 TCGA-AA-3510-01 8 65509108 65509108 C A CYP7B1 3'UTR 0.36 TCGA-AA-3510-01 8 65527673 65527673 C A CYP7B1 Missense_Mutation p.D323Y 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-AA-3510-01 8 6669710 6669710 C A XKR5 RNA 0.28 TCGA-AA-3510-01 8 67064614 67064614 G T TRIM55 Missense_Mutation p.D330Y 0.25 deleterious(0) benign(0.11) TCGA-AA-3510-01 8 67726120 67726120 G A SGK3 Missense_Mutation p.E96K 0.35 tolerated(0.17) benign(0.446) TCGA-AA-3510-01 8 68179665 68179665 C A ARFGEF1 Nonsense_Mutation p.E529* 0.33 TCGA-AA-3510-01 8 69033155 69033155 G A PREX2 Splice_Site p.X1199_splice 0.19 TCGA-AA-3510-01 8 69136820 69136820 G T PREX2 Missense_Mutation p.K1578N 0.29 deleterious(0) possibly_damaging(0.601) TCGA-AA-3510-01 8 69445236 69445236 G T C8orf34 Missense_Mutation p.K319N 0.10 deleterious(0) probably_damaging(0.991) TCGA-AA-3510-01 8 70536227 70536227 G A SULF1 Missense_Mutation p.E549K 0.22 tolerated(0.09) benign(0.036) TCGA-AA-3510-01 8 70591773 70591773 G A SLCO5A1 Missense_Mutation p.R622C 0.30 deleterious(0) probably_damaging(0.93) TCGA-AA-3510-01 8 71069287 71069287 A G NCOA2 Missense_Mutation p.M438T 0.10 tolerated(0.69) benign(0) TCGA-AA-3510-01 8 71646621 71646621 C A XKR9 Missense_Mutation p.L362I 0.49 tolerated(0.12) benign(0.021) TCGA-AA-3510-01 8 7340149 7340149 G T DEFB106B Missense_Mutation p.P59T 0.41 tolerated_low_confidence(0.12) benign(0.001) TCGA-AA-3510-01 8 73848375 73848375 T G KCNB2 Missense_Mutation p.F262C 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 8 73850212 73850212 C A KCNB2 Silent p.V874V 0.45 TCGA-AA-3510-01 8 77775994 77775994 G T ZFHX4 Missense_Mutation p.K3348N 0.43 benign(0.05) TCGA-AA-3510-01 8 79652305 79652305 C A IL7 Nonsense_Mutation p.E54* 0.34 TCGA-AA-3510-01 8 82359636 82359636 G A PMP2 5'UTR 0.28 TCGA-AA-3510-01 8 82583214 82583214 G T IMPA1 Missense_Mutation p.L235I 0.29 tolerated(0.13) benign(0.417) TCGA-AA-3510-01 8 82614873 82614873 G T ZFAND1 3'UTR 0.12 TCGA-AA-3510-01 8 8560322 8560322 C A CLDN23 Missense_Mutation p.F138L 0.29 tolerated(0.66) benign(0.232) TCGA-AA-3510-01 8 85833311 85833311 C A RALYL 3'UTR 0.23 TCGA-AA-3510-01 8 87242126 87242126 G A SLC7A13 Silent p.C127C 0.19 TCGA-AA-3510-01 8 88365868 88365868 G T CNBD1 Missense_Mutation p.R386I 0.22 deleterious(0) benign(0.379) TCGA-AA-3510-01 8 88884221 88884221 C A DCAF4L2 3'UTR 0.30 TCGA-AA-3510-01 8 88885439 88885439 C T DCAF4L2 Missense_Mutation p.R254H 0.37 deleterious(0.02) benign(0.308) TCGA-AA-3510-01 8 89086956 89086956 G A MMP16 Nonsense_Mutation p.R367* 0.31 TCGA-AA-3510-01 8 89130992 89130992 A G MMP16 Missense_Mutation p.Y270H 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 8 91837027 91837027 C A NECAB1 Missense_Mutation p.F69L 0.28 deleterious(0) probably_damaging(0.97) TCGA-AA-3510-01 8 92406055 92406055 G A SLC26A7 Missense_Mutation p.D603N 0.40 tolerated(0.28) benign(0.359) TCGA-AA-3510-01 8 92999180 92999180 C A RUNX1T1 Nonsense_Mutation p.E349* 0.28 TCGA-AA-3510-01 8 93029685 93029685 G T RUNX1T1 Intron 0.29 TCGA-AA-3510-01 8 94822067 94822067 C A TMEM67 Missense_Mutation p.L906I 0.09 tolerated(0.32) possibly_damaging(0.851) TCGA-AA-3510-01 8 94937495 94937495 C T PDP1 3'UTR 0.33 TCGA-AA-3510-01 8 95423526 95423526 C A RAD54B Nonsense_Mutation p.E108* 0.29 TCGA-AA-3510-01 8 95686699 95686699 G A ESRP1 Missense_Mutation p.R539Q 0.40 tolerated(0.07) possibly_damaging(0.765) TCGA-AA-3510-01 8 95732221 95732221 G T DPY19L4 5'UTR 0.06 TCGA-AA-3510-01 8 99115125 99115125 C T HRSP12 Missense_Mutation p.R120Q 0.23 tolerated(0.23) benign(0.07) TCGA-AA-3510-01 8 99224702 99224702 G T NIPAL2 Missense_Mutation p.L196I 0.26 deleterious(0.05) benign(0.39) TCGA-AA-3510-01 8 99441587 99441587 G A KCNS2 Silent p.T460T 0.33 TCGA-AA-3510-01 8 99608325 99608325 C T STK3 Missense_Mutation p.D281N 0.29 tolerated(0.14) benign(0.308) TCGA-AA-3510-01 8 99761514 99761514 C T STK3 Missense_Mutation p.R142Q 0.24 tolerated(0.06) possibly_damaging(0.486) TCGA-AA-3510-01 8 99962969 99962969 A C OSR2 Missense_Mutation p.T248P 0.11 tolerated(0.06) benign(0.014) TCGA-AA-3510-01 9 100092448 100092448 G T CCDC180 Nonsense_Mutation p.E645* 0.08 TCGA-AA-3510-01 9 100617579 100617579 C T FOXE1 3'UTR 0.36 TCGA-AA-3510-01 9 100693040 100693040 C A HEMGN Missense_Mutation p.D213Y 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3510-01 9 101052788 101052788 G A GABBR2 3'UTR 0.33 TCGA-AA-3510-01 9 101258772 101258772 G T GABBR2 Missense_Mutation p.L219M 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 9 101552882 101552882 C T ANKS6 Silent p.G122G 0.38 TCGA-AA-3510-01 9 101824369 101824370 - A COL15A1 Frame_Shift_Ins p.L1176Ifs*39 0.24 TCGA-AA-3510-01 9 103062981 103062981 C T INVS 3'UTR 0.52 TCGA-AA-3510-01 9 103348156 103348156 C T MURC Missense_Mutation p.S173L 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 9 104170697 104170697 G A ZNF189 Missense_Mutation p.S216N 0.17 tolerated(0.41) benign(0.188) TCGA-AA-3510-01 9 104171225 104171225 G T ZNF189 Missense_Mutation p.R392I 0.35 deleterious(0.04) probably_damaging(0.987) TCGA-AA-3510-01 9 104341616 104341616 G T GRIN3A Missense_Mutation p.F931L 0.29 deleterious(0.02) possibly_damaging(0.743) TCGA-AA-3510-01 9 104432909 104432909 G A GRIN3A Silent p.F595F 0.10 TCGA-AA-3510-01 9 107267358 107267358 A C OR13F1 Missense_Mutation p.K272T 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 9 107332343 107332343 C T OR13C8 Nonsense_Mutation p.R299* 0.34 TCGA-AA-3510-01 9 107620926 107620926 T G ABCA1 Missense_Mutation p.K199N 0.41 tolerated(0.48) benign(0.001) TCGA-AA-3510-01 9 111642368 111642368 G A IKBKAP Nonsense_Mutation p.R1142* 0.29 TCGA-AA-3510-01 9 111741714 111741714 C T CTNNAL1 Silent p.E316E 0.45 TCGA-AA-3510-01 9 112017825 112017825 C T EPB41L4B Missense_Mutation p.D379N 0.10 tolerated(0.24) benign(0.374) TCGA-AA-3510-01 9 112705429 112705429 C T PALM2 Silent p.I320I 0.23 TCGA-AA-3510-01 9 112930725 112930725 T C PALM2-AKAP2 Missense_Mutation p.L1087S 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 9 112963727 112963727 G A C9orf152 Missense_Mutation p.S74L 0.27 deleterious(0.04) possibly_damaging(0.67) TCGA-AA-3510-01 9 113192603 113192603 G T SVEP1 Silent p.I1827I 0.31 TCGA-AA-3510-01 9 114176724 114176724 A G KIAA0368 Silent p.L836L 0.40 TCGA-AA-3510-01 9 114359695 114359695 C T PTGR1 Missense_Mutation p.R3H 0.26 tolerated(0.71) benign(0.001) TCGA-AA-3510-01 9 114371486 114371486 C A LRRC37A5P RNA 0.27 TCGA-AA-3510-01 9 115760230 115760230 T G ZNF883 RNA 0.13 TCGA-AA-3510-01 9 116124669 116124669 C T BSPRY Silent p.F184F 0.11 TCGA-AA-3510-01 9 116345956 116345956 G A RGS3 Missense_Mutation p.G755D 0.33 tolerated_low_confidence(0.11) benign(0.004) TCGA-AA-3510-01 9 116835284 116835284 T G AMBP Missense_Mutation p.E159D 0.32 tolerated(0.8) benign(0.058) TCGA-AA-3510-01 9 116930181 116930181 G A COL27A1 Missense_Mutation p.A116T 0.19 unknown(0) TCGA-AA-3510-01 9 117019 117019 C T FOXD4 Silent p.R367R 0.17 TCGA-AA-3510-01 9 117848660 117848660 G A TNC Silent p.V450V 0.26 TCGA-AA-3510-01 9 120474975 120474975 T G TLR4 Missense_Mutation p.I190S 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 9 121452 121452 G T CBWD1 3'UTR 0.21 TCGA-AA-3510-01 9 121929911 121929911 G A BRINP1 Silent p.F579F 0.25 TCGA-AA-3510-01 9 123205904 123205904 C T CDK5RAP2 Missense_Mutation p.E1048K 0.25 tolerated(0.06) possibly_damaging(0.651) TCGA-AA-3510-01 9 123205964 123205964 T G CDK5RAP2 Missense_Mutation p.K1028Q 0.34 tolerated(0.41) possibly_damaging(0.788) TCGA-AA-3510-01 9 123222916 123222916 C T CDK5RAP2 Silent p.T712T 0.16 TCGA-AA-3510-01 9 123421776 123421776 G A MEGF9 Missense_Mutation p.R227W 0.38 deleterious(0.04) benign(0.004) TCGA-AA-3510-01 9 123594131 123594131 C A PSMD5 Missense_Mutation p.E137D 0.40 tolerated(0.29) probably_damaging(0.987) TCGA-AA-3510-01 9 123852644 123852644 G T CNTRL Silent p.L103L 0.16 TCGA-AA-3510-01 9 125437530 125437530 G A OR1L3 Missense_Mutation p.G41E 0.28 deleterious(0) probably_damaging(0.991) TCGA-AA-3510-01 9 125674279 125674279 G T ZBTB6 Missense_Mutation p.L25I 0.30 tolerated(0.19) benign(0.11) TCGA-AA-3510-01 9 125932311 125932311 C A STRBP Missense_Mutation p.E135D 0.36 tolerated(1) benign(0.015) TCGA-AA-3510-01 9 126164046 126164046 G A DENND1A Intron 0.10 TCGA-AA-3510-01 9 126164872 126164872 G A DENND1A Intron 0.44 TCGA-AA-3510-01 9 127652737 127652737 T C GOLGA1 Silent p.E476E 0.10 TCGA-AA-3510-01 9 128206814 128206814 G A MAPKAP1 Missense_Mutation p.S470L 0.27 deleterious(0.01) benign(0.044) TCGA-AA-3510-01 9 129157882 129157882 C T MVB12B Nonsense_Mutation p.R190* 0.41 TCGA-AA-3510-01 9 129645733 129645733 C A ZBTB34 3'UTR 0.32 TCGA-AA-3510-01 9 129647991 129647991 G T ZBTB34 3'UTR 0.28 TCGA-AA-3510-01 9 129648069 129648069 C A ZBTB34 3'UTR 0.27 TCGA-AA-3510-01 9 130153001 130153001 A G GARNL3 Missense_Mutation p.Q942R 0.34 tolerated_low_confidence(0.09) benign(0.001) TCGA-AA-3510-01 9 130164976 130164976 C T SLC2A8 Missense_Mutation p.R223W 0.33 deleterious(0.01) possibly_damaging(0.766) TCGA-AA-3510-01 9 130586584 130586584 G A ENG Missense_Mutation p.A378V 0.31 tolerated(0.22) benign(0.166) TCGA-AA-3510-01 9 131004518 131004518 G A DNM1 Missense_Mutation p.R522H 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3510-01 9 131455237 131455237 G T SET Nonsense_Mutation p.E170* 0.26 TCGA-AA-3510-01 9 131455942 131455942 C T SET Missense_Mutation p.T186M 0.44 tolerated(0.23) benign(0.148) TCGA-AA-3510-01 9 13162707 13162707 A C MPDZ Missense_Mutation p.F1114L 0.31 tolerated(0.11) benign(0.003) TCGA-AA-3510-01 9 132381873 132381873 C T C9orf50 Silent p.S214S 0.39 TCGA-AA-3510-01 9 132741649 132741649 G T FNBP1 Missense_Mutation p.L49I 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-3510-01 9 133768958 133768958 T C QRFP Missense_Mutation p.R90G 0.09 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 9 133954543 133954543 A C LAMC3 Missense_Mutation p.K1262T 0.12 tolerated(0.27) benign(0.003) TCGA-AA-3510-01 9 134401349 134401349 C T UCK1 Missense_Mutation p.D212N 0.45 deleterious(0) probably_damaging(0.966) TCGA-AA-3510-01 9 134501344 134501344 T G RAPGEF1 Missense_Mutation p.K557T 0.32 tolerated(0.31) benign(0.209) TCGA-AA-3510-01 9 135204229 135204229 A G SETX Missense_Mutation p.V919A 0.36 tolerated_low_confidence(0.63) benign(0.003) TCGA-AA-3510-01 9 135205470 135205470 C A SETX Missense_Mutation p.E505D 0.09 tolerated(0.09) probably_damaging(0.998) TCGA-AA-3510-01 9 135277051 135277051 C A TTF1 Missense_Mutation p.K386N 0.31 deleterious(0) benign(0.265) TCGA-AA-3510-01 9 135931467 135931467 C T GTF3C5 Silent p.D419D 0.43 TCGA-AA-3510-01 9 136230314 136230314 G A SURF4 3'UTR 0.08 TCGA-AA-3510-01 9 136259451 136259451 C T C9orf96 Missense_Mutation p.A206V 0.26 deleterious(0) possibly_damaging(0.756) TCGA-AA-3510-01 9 136512976 136512976 G A DBH Missense_Mutation p.D345N 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 9 138516099 138516099 G T GLT6D1 Missense_Mutation p.F225L 0.38 deleterious(0) probably_damaging(0.923) TCGA-AA-3510-01 9 138656879 138656879 C T KCNT1 Silent p.F346F 0.40 TCGA-AA-3510-01 9 139336256 139336256 C T SEC16A Missense_Mutation p.S2342N 0.21 tolerated(0.15) benign(0.006) TCGA-AA-3510-01 9 139637334 139637334 G A LCN10 Silent p.L8L 0.38 TCGA-AA-3510-01 9 139836927 139836927 G A FBXW5 Intron 0.39 TCGA-AA-3510-01 9 140082429 140082429 C T ANAPC2 Missense_Mutation p.D82N 0.24 tolerated(0.29) benign(0.107) TCGA-AA-3510-01 9 140510095 140510095 A C C9orf37 3'UTR 0.42 TCGA-AA-3510-01 9 141008882 141008882 C T CACNA1B Silent p.F1863F 0.25 TCGA-AA-3510-01 9 14307195 14307195 C T NFIB Missense_Mutation p.D119N 0.32 deleterious(0) probably_damaging(0.995) TCGA-AA-3510-01 9 177781 177781 G T CBWD1 Intron 0.18 TCGA-AA-3510-01 9 19341079 19341079 G T DENND4C Nonsense_Mutation p.E942* 0.34 TCGA-AA-3510-01 9 21142018 21142018 A C IFNW1 5'UTR 0.26 TCGA-AA-3510-01 9 21201592 21201592 T C IFNA7 3'UTR 0.08 TCGA-AA-3510-01 9 21304825 21304825 C T IFNA5 Missense_Mutation p.R144K 0.27 tolerated(0.66) benign(0.066) TCGA-AA-3510-01 9 21968025 21968025 A C CDKN2A 3'Flank 0.38 TCGA-AA-3510-01 9 2729721 2729721 G T KCNV2 Missense_Mutation p.E544D 0.19 tolerated_low_confidence(0.1) benign(0.001) TCGA-AA-3510-01 9 32423347 32423347 A C ACO1 Missense_Mutation p.K334T 0.14 deleterious(0.03) benign(0.002) TCGA-AA-3510-01 9 32457320 32457320 C T DDX58 Missense_Mutation p.A860T 0.32 tolerated(0.38) benign(0.147) TCGA-AA-3510-01 9 32632806 32632806 C A TAF1L Missense_Mutation p.E924D 0.36 deleterious(0.03) benign(0.026) TCGA-AA-3510-01 9 32634926 32634926 T G TAF1L Missense_Mutation p.T218P 0.35 tolerated(0.31) benign(0.048) TCGA-AA-3510-01 9 32785737 32785737 T G TMEM215 3'UTR 0.25 TCGA-AA-3510-01 9 34489417 34489417 C T DNAI1 Missense_Mutation p.R120W 0.17 deleterious(0) possibly_damaging(0.776) TCGA-AA-3510-01 9 34490013 34490013 C A DNAI1 Missense_Mutation p.S131Y 0.10 deleterious(0.04) benign(0.285) TCGA-AA-3510-01 9 35370383 35370383 T C UNC13B Missense_Mutation p.V428A 0.25 deleterious(0) probably_damaging(0.992) TCGA-AA-3510-01 9 35698842 35698842 G A TLN1 Missense_Mutation p.A2363V 0.11 deleterious(0) probably_damaging(0.993) TCGA-AA-3510-01 9 37305713 37305713 T G ZCCHC7 Splice_Site p.X317_splice 0.31 TCGA-AA-3510-01 9 37740153 37740153 G A FRMPD1 Missense_Mutation p.R543H 0.31 tolerated(0.55) benign(0.001) TCGA-AA-3510-01 9 37745618 37745618 G T FRMPD1 Nonsense_Mutation p.E1197* 0.11 TCGA-AA-3510-01 9 37746043 37746043 C A FRMPD1 Missense_Mutation p.F1338L 0.26 tolerated(1) benign(0.003) TCGA-AA-3510-01 9 39140628 39140628 G A CNTNAP3 Silent p.Y588Y 0.28 TCGA-AA-3510-01 9 405081 405081 A C DOCK8 Intron 0.21 TCGA-AA-3510-01 9 40772654 40772654 C A ZNF658 Missense_Mutation p.R874I 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-3510-01 9 40773149 40773149 G A ZNF658 Missense_Mutation p.T709M 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3510-01 9 43818146 43818146 G A CNTNAP3B Missense_Mutation p.E345K 0.50 deleterious(0.03) benign(0.003) TCGA-AA-3510-01 9 4656088 4656088 A G SPATA6L Intron 0.44 TCGA-AA-3510-01 9 4664370 4664370 T G PPAPDC2 3'UTR 0.27 TCGA-AA-3510-01 9 6554755 6554755 G A GLDC Silent p.F743F 0.25 TCGA-AA-3510-01 9 66465987 66465987 T G RP11-262H14.1 RNA 0.19 TCGA-AA-3510-01 9 69423611 69423611 G A ANKRD20A4 Missense_Mutation p.R636K 0.14 tolerated(0.25) benign(0.043) TCGA-AA-3510-01 9 69423667 69423667 G T ANKRD20A4 Missense_Mutation p.D655Y 0.10 tolerated(0.16) probably_damaging(0.999) TCGA-AA-3510-01 9 70484332 70484332 A C CBWD5 Intron 0.07 TCGA-AA-3510-01 9 71397274 71397274 G A FAM122A 3'UTR 0.17 TCGA-AA-3510-01 9 71478840 71478840 C A PIP5K1B Missense_Mutation p.L53I 0.29 deleterious(0) probably_damaging(0.996) TCGA-AA-3510-01 9 71861569 71861569 G T TJP2 Intron 0.35 TCGA-AA-3510-01 9 75524672 75524672 A C ALDH1A1 Missense_Mutation p.F402V 0.38 deleterious(0) possibly_damaging(0.691) TCGA-AA-3510-01 9 77377203 77377203 C A TRPM6 Nonsense_Mutation p.E1462* 0.29 TCGA-AA-3510-01 9 79120052 79120052 G T GCNT1 3'UTR 0.37 TCGA-AA-3510-01 9 79121927 79121927 C A GCNT1 3'UTR 0.37 TCGA-AA-3510-01 9 79320483 79320483 A C PRUNE2 Missense_Mutation p.F2236C 0.30 tolerated(0.12) benign(0.01) TCGA-AA-3510-01 9 80412465 80412465 G A GNAQ Silent p.Y192Y 0.25 TCGA-AA-3510-01 9 84531286 84531286 G T SPATA31D5P RNA 0.41 TCGA-AA-3510-01 9 84531974 84531974 T C SPATA31D5P RNA 0.52 TCGA-AA-3510-01 9 84564225 84564225 A C RP11-383M4.6 Intron 0.38 TCGA-AA-3510-01 9 84607392 84607392 G A SPATA31D1 Silent p.P669P 0.30 TCGA-AA-3510-01 9 84607496 84607496 G A SPATA31D1 Missense_Mutation p.R704H 0.24 tolerated(0.58) possibly_damaging(0.81) TCGA-AA-3510-01 9 8504351 8504351 T G PTPRD Missense_Mutation p.N578H 0.18 tolerated(0.05) probably_damaging(0.999) TCGA-AA-3510-01 9 86258703 86258703 T G IDNK 3'UTR 0.53 TCGA-AA-3510-01 9 86571282 86571282 C T C9orf64 Missense_Mutation p.R45H 0.38 tolerated(0.08) benign(0.002) TCGA-AA-3510-01 9 87338614 87338614 C T NTRK2 Missense_Mutation p.S237F 0.41 deleterious(0) probably_damaging(0.956) TCGA-AA-3510-01 9 88193952 88193952 G A AGTPBP1 Silent p.F1035F 0.34 TCGA-AA-3510-01 9 88200481 88200481 C T AGTPBP1 Missense_Mutation p.R981Q 0.24 tolerated(0.51) probably_damaging(0.954) TCGA-AA-3510-01 9 88624844 88624844 C T NAA35 Missense_Mutation p.R430W 0.32 deleterious(0) probably_damaging(0.973) TCGA-AA-3510-01 9 90321239 90321239 C A DAPK1 Missense_Mutation p.L1085I 0.33 deleterious(0.01) benign(0.297) TCGA-AA-3510-01 9 90535521 90535521 G A SPATA31C1 RNA 0.28 TCGA-AA-3510-01 9 91090174 91090174 T G SPIN1 Missense_Mutation p.D257E 0.26 deleterious(0.01) benign(0.275) TCGA-AA-3510-01 9 91262375 91262375 G A RP13-60M5.2 RNA 0.45 TCGA-AA-3510-01 9 91616259 91616259 C A S1PR3 Silent p.V48V 0.31 TCGA-AA-3510-01 9 91931604 91931604 T A CKS2 3'UTR 0.30 TCGA-AA-3510-01 9 95179347 95179347 T C OMD Missense_Mutation p.E165G 0.10 deleterious(0) probably_damaging(0.983) TCGA-AA-3510-01 9 95267973 95267973 C A ECM2 Splice_Site p.X436_splice 0.20 TCGA-AA-3510-01 9 95599636 95599636 G A ANKRD19P RNA 0.24 TCGA-AA-3510-01 9 96080325 96080325 G A WNK2 3'UTR 0.08 TCGA-AA-3510-01 9 96326594 96326594 G C FAM120A Missense_Mutation p.M1043I 0.12 tolerated_low_confidence(0.2) benign(0) TCGA-AA-3510-01 9 96326826 96326826 T C FAM120A 3'UTR 0.17 TCGA-AA-3510-01 9 98009789 98009789 T C FANCC Missense_Mutation p.T59A 0.41 tolerated(0.67) benign(0.006) TCGA-AA-3510-01 9 98735058 98735058 A G ERCC6L2 3'Flank 0.33 TCGA-AA-3510-01 X 100349678 100349678 G T TMEM35 Missense_Mutation p.M79I 0.11 deleterious(0.02) benign(0.138) TCGA-AA-3510-01 X 100382126 100382126 G T CENPI Splice_Site p.X260_splice 0.47 TCGA-AA-3510-01 X 10046904 10046904 C T WWC3 Missense_Mutation p.R96C 0.65 deleterious(0) probably_damaging(0.944) TCGA-AA-3510-01 X 100490968 100490968 G T DRP2 Missense_Mutation p.M79I 0.63 deleterious(0.02) probably_damaging(0.942) TCGA-AA-3510-01 X 100881880 100881880 G T ARMCX3 3'UTR 0.70 TCGA-AA-3510-01 X 100882294 100882294 G A ARMCX3 3'UTR 0.66 TCGA-AA-3510-01 X 101138578 101138578 C A ZMAT1 Missense_Mutation p.E607D 0.35 deleterious(0.04) possibly_damaging(0.524) TCGA-AA-3510-01 X 101139378 101139378 C A ZMAT1 Nonsense_Mutation p.E341* 0.38 TCGA-AA-3510-01 X 101911278 101911278 T C GPRASP1 Missense_Mutation p.S813P 0.72 deleterious(0.02) possibly_damaging(0.883) TCGA-AA-3510-01 X 101911395 101911395 G A GPRASP1 Missense_Mutation p.A852T 0.72 tolerated(0.72) benign(0.043) TCGA-AA-3510-01 X 102007040 102007040 T A BHLHB9 3'UTR 0.64 TCGA-AA-3510-01 X 102840804 102840804 C T TCEAL4 5'UTR 0.63 TCGA-AA-3510-01 X 106776738 106776738 C T FRMPD3 Silent p.S118S 0.52 TCGA-AA-3510-01 X 107977129 107977129 G A IRS4 Missense_Mutation p.R816W 0.58 deleterious(0) unknown(0) TCGA-AA-3510-01 X 110406915 110406915 A C PAK3 Missense_Mutation p.K278N 0.38 deleterious(0.03) probably_damaging(0.944) TCGA-AA-3510-01 X 110439784 110439784 G A PAK3 Silent p.P477P 0.55 TCGA-AA-3510-01 X 111022224 111022224 C A TRPC5 Nonsense_Mutation p.E741* 0.70 TCGA-AA-3510-01 X 111698217 111698217 C A ZCCHC16 Silent p.I87I 0.30 TCGA-AA-3510-01 X 114536641 114536641 C T LUZP4 Missense_Mutation p.S59L 0.64 tolerated(0.42) benign(0.005) TCGA-AA-3510-01 X 114877786 114877786 A G PLS3 Silent p.P383P 0.60 TCGA-AA-3510-01 X 117527194 117527194 C T WDR44 Silent p.S262S 0.21 TCGA-AA-3510-01 X 118221581 118221581 G T KIAA1210 Silent p.I1204I 0.67 TCGA-AA-3510-01 X 118726448 118726448 G T NKRF Missense_Mutation p.L20I 0.76 tolerated(0.07) possibly_damaging(0.722) TCGA-AA-3510-01 X 119374155 119374155 T G NKAPP1 RNA 0.68 TCGA-AA-3510-01 X 119389242 119389242 A G ZBTB33 Missense_Mutation p.T658A 0.59 tolerated(0.51) benign(0.195) TCGA-AA-3510-01 X 119390007 119390007 C T ZBTB33 3'UTR 0.58 TCGA-AA-3510-01 X 123217381 123217381 G A STAG2 Missense_Mutation p.R1012Q 0.69 tolerated(0.06) benign(0.121) TCGA-AA-3510-01 X 123514499 123514499 G A TENM1 Missense_Mutation p.R2696W 0.64 deleterious(0) possibly_damaging(0.753) TCGA-AA-3510-01 X 125685911 125685911 G A DCAF12L1 Silent p.F227F 0.81 TCGA-AA-3510-01 X 128902331 128902331 G A XPNPEP2 Missense_Mutation p.R632H 0.11 deleterious(0.02) benign(0.022) TCGA-AA-3510-01 X 12904795 12904795 C T TLR7 Missense_Mutation p.L390F 0.64 tolerated(0.52) probably_damaging(0.964) TCGA-AA-3510-01 X 12940264 12940264 C T TLR8 Silent p.V1035V 0.74 TCGA-AA-3510-01 X 129518919 129518919 G A GPR119 Missense_Mutation p.T168I 0.65 tolerated(0.62) benign(0.007) TCGA-AA-3510-01 X 132160837 132160837 C A USP26 Missense_Mutation p.R471I 0.55 deleterious(0.01) benign(0.173) TCGA-AA-3510-01 X 134125662 134125662 C G SMIM10 3'UTR 0.65 TCGA-AA-3510-01 X 134126054 134126054 T G SMIM10 3'UTR 0.62 TCGA-AA-3510-01 X 135323360 135323360 G T MAP7D3 Nonsense_Mutation p.S165* 0.65 TCGA-AA-3510-01 X 135428054 135428054 A C GPR112 Missense_Mutation p.K730T 0.18 tolerated(0.15) benign(0.044) TCGA-AA-3510-01 X 135494436 135494436 T G GPR112 Missense_Mutation p.F2983C 0.77 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 X 136112505 136112505 G T GPR101 Missense_Mutation p.F443L 0.67 tolerated(0.07) probably_damaging(0.997) TCGA-AA-3510-01 X 136652143 136652143 G T ZIC3 Missense_Mutation p.D440Y 0.60 deleterious(0.01) benign(0.424) TCGA-AA-3510-01 X 138670552 138670552 T G MCF2 Missense_Mutation p.N882H 0.67 deleterious(0) benign(0.396) TCGA-AA-3510-01 X 138680562 138680562 T G MCF2 Intron 0.90 TCGA-AA-3510-01 X 138697171 138697171 C T MCF2 Missense_Mutation p.R471Q 0.15 tolerated(1) probably_damaging(0.997) TCGA-AA-3510-01 X 140985441 140985441 C T MAGEC3 Silent p.V585V 0.28 TCGA-AA-3510-01 X 142716408 142716408 G T SLITRK4 3'UTR 0.68 TCGA-AA-3510-01 X 142718545 142718545 A G SLITRK4 Missense_Mutation p.F127S 0.66 deleterious(0) probably_damaging(0.986) TCGA-AA-3510-01 X 142967842 142967842 T C UBE2NL 3'UTR 0.70 TCGA-AA-3510-01 X 142967917 142967917 C A UBE2NL 3'UTR 0.68 TCGA-AA-3510-01 X 144904739 144904739 A C SLITRK2 Missense_Mutation p.K266Q 0.39 tolerated(0.16) benign(0.342) TCGA-AA-3510-01 X 144905324 144905324 G A SLITRK2 Missense_Mutation p.E461K 0.74 deleterious(0) possibly_damaging(0.721) TCGA-AA-3510-01 X 144911099 144911099 C A TMEM257 3'UTR 0.57 TCGA-AA-3510-01 X 147084787 147084787 C T FMR1NB Missense_Mutation p.S115F 0.69 deleterious(0) possibly_damaging(0.683) TCGA-AA-3510-01 X 149014590 149014590 G T MAGEA8 3'UTR 0.11 TCGA-AA-3510-01 X 150867257 150867257 G T PRRG3 Intron 0.69 TCGA-AA-3510-01 X 150909269 150909269 G T CNGA2 Missense_Mutation p.K126N 0.71 tolerated(0.09) benign(0.02) TCGA-AA-3510-01 X 151138713 151138713 C T GABRE Missense_Mutation p.R73H 0.59 tolerated(0.37) possibly_damaging(0.515) TCGA-AA-3510-01 X 151935095 151935095 C T MAGEA3 3'UTR 0.15 TCGA-AA-3510-01 X 152482630 152482630 T G MAGEA1 Missense_Mutation p.E127D 0.65 tolerated(0.3) probably_damaging(0.992) TCGA-AA-3510-01 X 152613869 152613869 T G ZNF275 3'UTR 0.17 TCGA-AA-3510-01 X 152826153 152826153 C T ATP2B3 Silent p.I953I 0.63 TCGA-AA-3510-01 X 153197862 153197862 C T NAA10 Missense_Mutation p.R83H 0.55 deleterious(0.03) possibly_damaging(0.762) TCGA-AA-3510-01 X 153284104 153284104 G A IRAK1 Silent p.C225C 0.69 TCGA-AA-3510-01 X 153699469 153699469 G T PLXNA3 Silent p.V1726V 0.75 TCGA-AA-3510-01 X 153762270 153762270 G A G6PD Silent p.F280F 0.73 TCGA-AA-3510-01 X 153928301 153928301 T A GAB3 Missense_Mutation p.D368V 0.58 deleterious(0) possibly_damaging(0.739) TCGA-AA-3510-01 X 154091435 154091435 C T F8 Missense_Mutation p.R2166Q 0.74 tolerated(0.15) benign(0.077) TCGA-AA-3510-01 X 154508602 154508602 G A CLIC2 Missense_Mutation p.L140F 0.69 deleterious(0.01) possibly_damaging(0.759) TCGA-AA-3510-01 X 155006529 155006529 C T SPRY3 3'UTR 0.08 TCGA-AA-3510-01 X 155010933 155010933 G T SPRY3 3'UTR 0.34 TCGA-AA-3510-01 X 15822298 15822298 G A ZRSR2 Missense_Mutation p.R126Q 0.63 tolerated(0.87) unknown(0) TCGA-AA-3510-01 X 1718413 1718413 G A AKAP17A Intron 0.31 TCGA-AA-3510-01 X 1755366 1755366 C T ASMT Silent p.L275L 0.29 TCGA-AA-3510-01 X 18220011 18220011 C T BEND2 Silent p.A319A 0.68 TCGA-AA-3510-01 X 18342068 18342068 C A SCML2 Missense_Mutation p.R103I 0.32 deleterious(0) benign(0.303) TCGA-AA-3510-01 X 18525168 18525168 C A CDKL5 5'UTR 0.69 TCGA-AA-3510-01 X 18606106 18606106 C T CDKL5 Missense_Mutation p.S196L 0.35 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-AA-3510-01 X 22051209 22051209 G A PHEX Missense_Mutation p.G29D 0.23 tolerated(0.16) benign(0.022) TCGA-AA-3510-01 X 22291568 22291568 C T ZNF645 Missense_Mutation p.R154C 0.66 tolerated(0.17) benign(0.091) TCGA-AA-3510-01 X 24580267 24580267 G T PCYT1B 3'UTR 0.68 TCGA-AA-3510-01 X 24608208 24608208 G A PCYT1B Missense_Mutation p.R140C 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-AA-3510-01 X 25033784 25033784 A C ARX Missense_Mutation p.L24R 0.64 deleterious(0) unknown(0) TCGA-AA-3510-01 X 26212661 26212661 T C MAGEB6 Missense_Mutation p.F233S 0.11 deleterious(0) possibly_damaging(0.679) TCGA-AA-3510-01 X 2795286 2795286 G A GYG2 Missense_Mutation p.E428K 0.78 tolerated(0.15) benign(0.057) TCGA-AA-3510-01 X 2825653 2825653 G T ARSD Missense_Mutation p.H481N 0.73 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 X 34148347 34148347 C T FAM47A Silent p.S683S 0.57 TCGA-AA-3510-01 X 35820800 35820800 G T MAGEB16 Nonsense_Mutation p.E163* 0.71 TCGA-AA-3510-01 X 35959477 35959477 C A CXorf22 Missense_Mutation p.S160Y 0.67 tolerated(0.38) possibly_damaging(0.509) TCGA-AA-3510-01 X 36254841 36254841 G A CXorf30 5'UTR 0.60 TCGA-AA-3510-01 X 37028109 37028109 C T FAM47C Silent p.S542S 0.66 TCGA-AA-3510-01 X 37587353 37587353 T G XK Missense_Mutation p.F325V 0.15 deleterious(0.01) possibly_damaging(0.902) TCGA-AA-3510-01 X 37587422 37587422 G A XK Missense_Mutation p.A348T 0.72 tolerated(0.48) possibly_damaging(0.784) TCGA-AA-3510-01 X 41075506 41075506 C T USP9X Missense_Mutation p.R1896C 0.12 tolerated(0.05) benign(0.007) TCGA-AA-3510-01 X 47466388 47466388 G T SYN1 Missense_Mutation p.F161L 0.64 tolerated(0.19) benign(0.11) TCGA-AA-3510-01 X 47774589 47774589 C A ZNF81 Missense_Mutation p.L182I 0.09 tolerated(0.06) benign(0.001) TCGA-AA-3510-01 X 48814812 48814812 C A OTUD5 Missense_Mutation p.K7N 0.53 deleterious_low_confidence(0) unknown(0) TCGA-AA-3510-01 X 49021091 49021091 C T MAGIX Silent p.R81R 0.68 TCGA-AA-3510-01 X 49143372 49143372 G T PPP1R3F Missense_Mutation p.K740N 0.21 tolerated_low_confidence(0.14) benign(0.002) TCGA-AA-3510-01 X 50053954 50053954 G T CCNB3 Missense_Mutation p.D929Y 0.11 deleterious(0.01) possibly_damaging(0.758) TCGA-AA-3510-01 X 50659039 50659039 G A BMP15 Missense_Mutation p.R204Q 0.51 tolerated(0.31) benign(0.009) TCGA-AA-3510-01 X 51150773 51150773 G A CXorf67 Missense_Mutation p.R302Q 0.62 tolerated(0.08) probably_damaging(0.979) TCGA-AA-3510-01 X 51638385 51638385 C A MAGED1 Missense_Mutation p.F150L 0.62 deleterious_low_confidence(0.02) unknown(0) TCGA-AA-3510-01 X 53436066 53436066 C T SMC1A Missense_Mutation p.R491H 0.43 tolerated(0.41) benign(0.06) TCGA-AA-3510-01 X 54956484 54956484 C T TRO Silent p.F1109F 0.10 TCGA-AA-3510-01 X 55651326 55651326 G T FOXR2 3'UTR 0.33 TCGA-AA-3510-01 X 55782281 55782281 C A RRAGB Missense_Mutation p.S276Y 0.40 deleterious(0) probably_damaging(0.967) TCGA-AA-3510-01 X 57515407 57515407 C T FAAH2 3'UTR 0.71 TCGA-AA-3510-01 X 62570411 62570411 T C SPIN4 Silent p.L96L 0.62 TCGA-AA-3510-01 X 66937378 66937378 G A AR Silent p.G744G 0.75 TCGA-AA-3510-01 X 69282572 69282572 C T OTUD6A Silent p.F66F 0.68 TCGA-AA-3510-01 X 69504463 69504463 C T RAB41 Silent p.F212F 0.70 TCGA-AA-3510-01 X 69669235 69669235 C A DLG3 Silent p.I145I 0.61 TCGA-AA-3510-01 X 71492548 71492548 T C RPS4X Silent p.R255R 0.32 TCGA-AA-3510-01 X 72667221 72667221 C T CDX4 Silent p.F44F 0.55 TCGA-AA-3510-01 X 73524355 73524355 G A ZCCHC13 Missense_Mutation p.R85Q 0.71 tolerated(0.07) benign(0.169) TCGA-AA-3510-01 X 73962473 73962473 C A KIAA2022 Missense_Mutation p.R640I 0.70 deleterious(0) probably_damaging(0.961) TCGA-AA-3510-01 X 75003408 75003408 C A MAGEE2 Missense_Mutation p.Q493H 0.58 deleterious(0.01) possibly_damaging(0.548) TCGA-AA-3510-01 X 75396782 75396782 C T PBDC1 Nonsense_Mutation p.R122* 0.68 TCGA-AA-3510-01 X 76888739 76888739 C T ATRX Missense_Mutation p.S1697N 0.73 possibly_damaging(0.549) TCGA-AA-3510-01 X 76920267 76920267 T G ATRX Missense_Mutation p.R1270S 0.72 benign(0.021) TCGA-AA-3510-01 X 77528980 77528980 A C CYSLTR1 Missense_Mutation p.I88M 0.20 tolerated(0.1) benign(0.315) TCGA-AA-3510-01 X 82764037 82764037 C T POU3F4 Silent p.F235F 0.70 TCGA-AA-3510-01 X 82764391 82764391 A C POU3F4 Missense_Mutation p.K353N 0.19 tolerated_low_confidence(0.56) benign(0.001) TCGA-AA-3510-01 X 8538564 8538564 C A KAL1 Missense_Mutation p.K346N 0.62 tolerated(0.09) benign(0.02) TCGA-AA-3510-01 X 86773015 86773015 G A KLHL4 Missense_Mutation p.G40E 0.64 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AA-3510-01 X 8998383 8998383 C A FAM9B Missense_Mutation p.R67I 0.80 deleterious(0.01) benign(0.123) TCGA-AA-3510-01 X 9000413 9000413 C T FAM9B Missense_Mutation p.E40K 0.11 tolerated(0.28) probably_damaging(0.956) TCGA-AA-3510-01 X 91066258 91066258 A T PCDH11X 5'UTR 0.31 TCGA-AA-3510-01 X 91090423 91090423 C A PCDH11X 5'UTR 0.60 TCGA-AA-3510-01 X 91132830 91132830 G T PCDH11X Nonsense_Mutation p.E531* 0.23 TCGA-AA-3510-01 X 99934350 99934350 C T SYTL4 Missense_Mutation p.A540T 0.67 deleterious(0) possibly_damaging(0.901) TCGA-AA-3510-01 Y 15471663 15471663 C A UTY Missense_Mutation p.R390I 0.69 deleterious(0) probably_damaging(0.999) TCGA-AA-3510-01 Y 16845406 16845406 A C NLGN4Y Intron 0.64 TCGA-AA-3510-01 Y 16845416 16845416 G T NLGN4Y Intron 0.68 TCGA-AA-3510-01 Y 4900717 4900717 G A PCDH11Y 5'UTR 0.67 TCGA-AA-3510-01 Y 4925237 4925237 C T PCDH11Y Missense_Mutation p.R125C 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3510-01 Y 4967846 4967846 G A PCDH11Y Missense_Mutation p.V743I 0.65 tolerated(0.06) benign(0.003) TCGA-AA-3510-01 Y 5605715 5605715 C A PCDH11Y Missense_Mutation p.S1252Y 0.67 deleterious_low_confidence(0) possibly_damaging(0.532) TCGA-AA-3511-01 10 114917829 114917830 - T TCF7L2 Splice_Site p.X440_splice 0.49 TCGA-AA-3511-01 10 13230880 13230880 G A MCM10 Splice_Site p.X407_splice 0.08 TCGA-AA-3511-01 10 26589935 26589935 A C GAD2 3'UTR 0.46 TCGA-AA-3511-01 10 73500705 73500705 G C CDH23 Missense_Mutation p.E1544Q 0.18 deleterious(0.04) probably_damaging(0.943) TCGA-AA-3511-01 10 94368890 94368890 G C KIF11 Missense_Mutation p.E167D 0.09 deleterious(0) possibly_damaging(0.867) TCGA-AA-3511-01 11 105732878 105732878 G C GRIA4 Missense_Mutation p.E206Q 0.30 deleterious(0.05) probably_damaging(0.994) TCGA-AA-3511-01 11 111405244 111405244 A T C11orf88 Intron 0.16 TCGA-AA-3511-01 11 111405245 111405245 A T C11orf88 Intron 0.16 TCGA-AA-3511-01 11 3063477 3063477 C T CARS Missense_Mutation p.R95Q 0.64 deleterious(0.04) benign(0.006) TCGA-AA-3511-01 11 55927529 55927529 G A OR8K5 Nonsense_Mutation p.R89* 0.10 TCGA-AA-3511-01 11 5632632 5632632 C G TRIM6 3'UTR 0.18 TCGA-AA-3511-01 11 61254530 61254530 A G PPP1R32 Silent p.K315K 0.08 TCGA-AA-3511-01 11 64032811 64032811 C T PLCB3 Nonsense_Mutation p.R958* 0.14 TCGA-AA-3511-01 11 65422055 65422055 C T RELA Missense_Mutation p.V484M 0.28 tolerated_low_confidence(0.13) benign(0.004) TCGA-AA-3511-01 11 66083296 66083296 C T CD248 Silent p.T401T 0.30 TCGA-AA-3511-01 11 67163589 67163589 T G RAD9A Missense_Mutation p.L226R 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-3511-01 11 8959147 8959147 A C ASCL3 3'UTR 0.60 TCGA-AA-3511-01 12 122812506 122812506 G A CLIP1 Silent p.A1079A 0.48 TCGA-AA-3511-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.32 deleterious(0) benign(0.361) TCGA-AA-3511-01 12 53880851 53880851 C T MAP3K12 Missense_Mutation p.E109K 0.28 tolerated(0.11) benign(0.23) TCGA-AA-3511-01 12 54891554 54891554 C T NCKAP1L 5'UTR 0.30 TCGA-AA-3511-01 12 8976325 8976325 C T A2ML1 Missense_Mutation p.P86S 0.35 deleterious(0) possibly_damaging(0.688) TCGA-AA-3511-01 13 38225429 38225429 T C TRPC4 Silent p.R684R 0.10 TCGA-AA-3511-01 13 39263318 39263318 C T FREM2 Missense_Mutation p.R613C 0.52 deleterious(0) probably_damaging(0.989) TCGA-AA-3511-01 14 31762807 31762807 C G RP11-596D21.1 Intron 0.32 TCGA-AA-3511-01 14 45564658 45564658 A G PRPF39 Silent p.E72E 0.08 TCGA-AA-3511-01 14 57741038 57741038 T A AP5M1 Missense_Mutation p.F51I 0.24 tolerated(0.12) benign(0.033) TCGA-AA-3511-01 15 41223904 41223904 T C DLL4 Missense_Mutation p.C200R 0.43 deleterious(0) probably_damaging(0.995) TCGA-AA-3511-01 15 43527059 43527059 G A TGM5 Missense_Mutation p.R595C 0.60 tolerated(0.05) probably_damaging(0.976) TCGA-AA-3511-01 15 44913982 44913982 G C SPG11 Missense_Mutation p.I865M 0.16 deleterious(0.01) possibly_damaging(0.844) TCGA-AA-3511-01 15 63075993 63075993 G A TLN2 Silent p.P1880P 0.38 TCGA-AA-3511-01 16 23080809 23080809 G A USP31 Silent p.L873L 0.26 TCGA-AA-3511-01 16 23224441 23224441 C A SCNN1G Missense_Mutation p.L484I 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-3511-01 16 28508659 28508659 G A APOBR Missense_Mutation p.G766E 0.11 tolerated(1) probably_damaging(0.969) TCGA-AA-3511-01 16 4033344 4033344 G A ADCY9 Missense_Mutation p.T803I 0.31 tolerated(1) benign(0) TCGA-AA-3511-01 16 735946 735946 C T WDR24 Missense_Mutation p.R499Q 0.26 tolerated(0.24) benign(0.085) TCGA-AA-3511-01 16 89986633 89986633 C T MC1R 3'UTR 0.17 TCGA-AA-3511-01 17 18392293 18392293 G A LGALS9C Silent p.T161T 0.13 TCGA-AA-3511-01 17 28656432 28656432 G C TMIGD1 Silent p.L66L 0.14 TCGA-AA-3511-01 17 39262582 39262582 T G KRTAP4-9 3'UTR 0.14 TCGA-AA-3511-01 17 42930882 42930882 T A EFTUD2 Intron 0.14 TCGA-AA-3511-01 17 4798402 4798402 C T MINK1 Nonsense_Mutation p.Q984* 0.19 TCGA-AA-3511-01 17 61958171 61958171 G A GH2 Silent p.H139H 0.13 TCGA-AA-3511-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.54 deleterious(0) probably_damaging(1) TCGA-AA-3511-01 18 61060663 61060663 A T VPS4B Silent p.L404L 0.43 TCGA-AA-3511-01 19 12243955 12243955 C T ZNF20 Missense_Mutation p.R349K 0.15 tolerated(0.29) benign(0.012) TCGA-AA-3511-01 19 12246656 12246656 A C ZNF20 Missense_Mutation p.L23V 0.21 deleterious(0) probably_damaging(0.996) TCGA-AA-3511-01 19 17949183 17949183 G A JAK3 Silent p.I486I 0.43 TCGA-AA-3511-01 19 20728372 20728372 A G ZNF737 Missense_Mutation p.S213P 0.22 tolerated(0.15) benign(0.041) TCGA-AA-3511-01 19 37130899 37130899 A C ZNF461 Missense_Mutation p.D116E 0.10 tolerated(0.25) benign(0.108) TCGA-AA-3511-01 19 38380711 38380711 C T WDR87 Silent p.S1161S 0.32 TCGA-AA-3511-01 19 3910875 3910875 G A ATCAY Missense_Mutation p.R285H 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-3511-01 19 49538982 49538982 C T CGB1 Missense_Mutation p.C118Y 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3511-01 19 52249869 52249869 C T FPR1 Missense_Mutation p.V127I 0.41 tolerated(0.05) possibly_damaging(0.858) TCGA-AA-3511-01 19 52520277 52520277 C G ZNF614 Missense_Mutation p.V192L 0.45 tolerated(0.84) benign(0.001) TCGA-AA-3511-01 19 53046575 53046575 A G ZNF808 Missense_Mutation p.K13R 0.10 tolerated(0.1) benign(0.099) TCGA-AA-3511-01 19 54662195 54662195 C T LENG1 Missense_Mutation p.R46H 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3511-01 19 56204056 56204056 G A EPN1 Silent p.G443G 0.33 TCGA-AA-3511-01 19 58370345 58370345 G C ZNF587 Missense_Mutation p.E189Q 0.17 tolerated(1) benign(0.403) TCGA-AA-3511-01 19 58549416 58549416 C T ZSCAN1 Missense_Mutation p.A71V 0.23 deleterious(0.01) possibly_damaging(0.76) TCGA-AA-3511-01 19 9069779 9069779 A C MUC16 Silent p.T5889T 0.18 TCGA-AA-3511-01 1 10529335 10529335 T A DFFA Missense_Mutation p.D66V 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3511-01 1 152816130 152816130 G C LCE6A Missense_Mutation p.S45T 0.10 tolerated(0.49) benign(0.106) TCGA-AA-3511-01 1 157068984 157068984 C T ETV3L Missense_Mutation p.R82H 0.35 deleterious(0.03) possibly_damaging(0.834) TCGA-AA-3511-01 1 160264314 160264314 C A COPA Missense_Mutation p.G888V 0.25 deleterious(0.01) probably_damaging(0.947) TCGA-AA-3511-01 1 161496158 161496158 C A HSPA6 Silent p.R570R 0.08 TCGA-AA-3511-01 1 175334318 175334318 A G TNR Silent p.I805I 0.15 TCGA-AA-3511-01 1 185200836 185200836 C T SWT1 Nonsense_Mutation p.Q813* 0.28 TCGA-AA-3511-01 1 207078332 207078332 G A FAIM3 3'UTR 0.23 TCGA-AA-3511-01 1 215821910 215821910 G A USH2A Missense_Mutation p.R4848W 0.38 benign(0.003) TCGA-AA-3511-01 1 248112924 248112924 C G OR2L8 Silent p.V255V 0.12 TCGA-AA-3511-01 1 248308779 248308779 C T OR2M5 Silent p.S110S 0.32 TCGA-AA-3511-01 1 248570069 248570069 G T OR2T1 Silent p.L258L 0.34 TCGA-AA-3511-01 1 29019492 29019492 T C GMEB1 Silent p.H135H 0.44 TCGA-AA-3511-01 1 29641954 29641954 G A PTPRU Missense_Mutation p.V1110I 0.24 tolerated(0.1) probably_damaging(0.995) TCGA-AA-3511-01 1 31409510 31409510 G A PUM1 Missense_Mutation p.R1139W 0.17 deleterious(0) probably_damaging(0.994) TCGA-AA-3511-01 1 64125353 64125353 A G PGM1 3'UTR 0.10 TCGA-AA-3511-01 1 66838249 66838249 G A PDE4B Missense_Mutation p.S700N 0.12 tolerated_low_confidence(0.7) benign(0.001) TCGA-AA-3511-01 1 70820664 70820664 T A HHLA3 Silent p.L10L 0.27 TCGA-AA-3511-01 1 86210494 86210494 A T COL24A1 Silent p.T1509T 0.09 TCGA-AA-3511-01 1 89876020 89876020 G A GBP1P1 RNA 0.16 TCGA-AA-3511-01 1 91403453 91403453 A C ZNF644 Missense_Mutation p.L1093V 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3511-01 20 21689268 21689268 C A PAX1 Missense_Mutation p.A330D 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.517) TCGA-AA-3511-01 20 24944595 24944595 C T APMAP Missense_Mutation p.D369N 0.30 tolerated(0.08) benign(0.003) TCGA-AA-3511-01 20 36769709 36769709 G T TGM2 Missense_Mutation p.D358E 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-3511-01 20 37161487 37161487 C G RALGAPB Missense_Mutation p.L744V 0.09 tolerated(0.17) probably_damaging(0.939) TCGA-AA-3511-01 20 40713407 40713407 G A PTPRT Missense_Mutation p.R1351C 0.25 deleterious(0) benign(0.003) TCGA-AA-3511-01 20 43058161 43058161 A T HNF4A Splice_Site p.X428_splice 0.11 TCGA-AA-3511-01 21 31587529 31587529 G A CLDN8 3'UTR 0.39 TCGA-AA-3511-01 21 31852583 31852583 G A KRTAP19-1 Silent p.F18F 0.30 TCGA-AA-3511-01 21 37736446 37736448 CTC - MORC3 In_Frame_Del p.P504del 0.48 TCGA-AA-3511-01 22 24199170 24199170 C T SLC2A11 5'UTR 0.25 TCGA-AA-3511-01 22 26348303 26348303 C T MYO18B Nonsense_Mutation p.R1962* 0.43 TCGA-AA-3511-01 22 29917016 29917016 T G THOC5 Silent p.P416P 0.17 TCGA-AA-3511-01 22 30886047 30886047 G A SEC14L4 3'UTR 0.53 TCGA-AA-3511-01 22 36894070 36894070 G A FOXRED2 Silent p.F450F 0.23 TCGA-AA-3511-01 22 45782892 45782892 T G SMC1B Missense_Mutation p.K589T 0.24 deleterious(0.01) possibly_damaging(0.655) TCGA-AA-3511-01 2 1312323 1312323 G A SNTG2 Missense_Mutation p.A448T 0.38 tolerated(0.25) benign(0.037) TCGA-AA-3511-01 2 168727347 168727348 - G B3GALT1 3'UTR 0.27 TCGA-AA-3511-01 2 179598042 179598042 G A TTN Silent p.H5326H 0.45 TCGA-AA-3511-01 2 196756410 196756410 G A DNAH7 Missense_Mutation p.A1672V 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3511-01 2 201785727 201785727 T C ORC2 Missense_Mutation p.N428S 0.44 deleterious(0) probably_damaging(0.971) TCGA-AA-3511-01 2 207175936 207175936 G A ZDBF2 Silent p.S2228S 0.13 TCGA-AA-3511-01 2 45826853 45826853 C T SRBD1 Missense_Mutation p.R128Q 0.45 tolerated_low_confidence(0.69) benign(0) TCGA-AA-3511-01 3 109028124 109028124 T C DPPA2 Missense_Mutation p.K79E 0.36 deleterious(0.04) benign(0.225) TCGA-AA-3511-01 3 121356005 121356005 C T HCLS1 Missense_Mutation p.E185K 0.24 deleterious(0.01) unknown(0) TCGA-AA-3511-01 3 124153163 124153163 C G KALRN Missense_Mutation p.H945D 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.647) TCGA-AA-3511-01 3 12845014 12845014 G A CAND2 Silent p.S32S 0.21 TCGA-AA-3511-01 3 149485423 149485423 T G ANKUB1 Missense_Mutation p.K342N 0.14 deleterious(0.04) possibly_damaging(0.449) TCGA-AA-3511-01 3 167034881 167034881 T G ZBBX Missense_Mutation p.K369T 0.10 deleterious(0) possibly_damaging(0.809) TCGA-AA-3511-01 3 172607271 172607271 C G SPATA16 3'UTR 0.20 TCGA-AA-3511-01 3 17413597 17413597 C T TBC1D5 Missense_Mutation p.R322K 0.17 tolerated(0.1) possibly_damaging(0.627) TCGA-AA-3511-01 3 183689679 183689679 A C ABCC5 Missense_Mutation p.M478R 0.11 tolerated(0.47) benign(0) TCGA-AA-3511-01 3 33194428 33194428 C T SUSD5 Missense_Mutation p.G566R 0.35 tolerated(0.35) benign(0.001) TCGA-AA-3511-01 3 38961470 38961470 T G SCN11A Missense_Mutation p.E305D 0.17 tolerated(0.3) benign(0.136) TCGA-AA-3511-01 3 50425031 50425031 C T CACNA2D2 Missense_Mutation p.V160M 0.25 tolerated(0.24) benign(0.005) TCGA-AA-3511-01 3 53274298 53274298 C T TKT Missense_Mutation p.A136T 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3511-01 3 77637975 77637975 A C ROBO2 Missense_Mutation p.Q874H 0.14 deleterious(0) benign(0.216) TCGA-AA-3511-01 4 129960371 129960371 C G SCLT1 Intron 0.19 TCGA-AA-3511-01 4 158060073 158060073 T A GLRB Silent p.G241G 0.08 TCGA-AA-3511-01 4 17842269 17842269 T C NCAPG Missense_Mutation p.V936A 0.36 tolerated_low_confidence(0.86) benign(0.001) TCGA-AA-3511-01 4 38799488 38799488 A C TLR1 Missense_Mutation p.I322S 0.14 deleterious(0.01) benign(0.393) TCGA-AA-3511-01 4 48524938 48524938 T A FRYL Missense_Mutation p.I2501L 0.34 tolerated(0.17) benign(0.007) TCGA-AA-3511-01 4 619517 619517 G A PDE6B Silent p.A34A 0.29 TCGA-AA-3511-01 5 101572458 101572458 A T SLCO4C1 3'UTR 0.27 TCGA-AA-3511-01 5 102361013 102361013 G T PAM Silent p.R888R 0.08 TCGA-AA-3511-01 5 11111130 11111130 A T CTNND2 Nonsense_Mutation p.L768* 0.17 TCGA-AA-3511-01 5 112175301 112175302 TG - APC Frame_Shift_Del p.L1337Pfs*4 0.60 TCGA-AA-3511-01 5 112177937 112177937 C T APC Missense_Mutation p.P2216S 0.15 benign(0.004) TCGA-AA-3511-01 5 11346683 11346683 C T CTNND2 Missense_Mutation p.G477S 0.23 tolerated(0.11) benign(0.007) TCGA-AA-3511-01 5 140517028 140517028 C T PCDHB5 Missense_Mutation p.P671L 0.17 deleterious_low_confidence(0.01) benign(0.064) TCGA-AA-3511-01 5 140626740 140626740 G A PCDHB15 Missense_Mutation p.G532S 0.44 deleterious_low_confidence(0.03) benign(0.154) TCGA-AA-3511-01 5 145843269 145843269 C G TCERG1 Missense_Mutation p.Q350E 0.18 tolerated(0.09) unknown(0) TCGA-AA-3511-01 5 148999995 148999996 AG - ARHGEF37 Frame_Shift_Del p.D326Pfs*4 0.71 TCGA-AA-3511-01 5 40852407 40852407 T A CARD6 Missense_Mutation p.L325I 0.10 deleterious(0.04) probably_damaging(0.956) TCGA-AA-3511-01 5 70930821 70930821 C A MCCC2 Missense_Mutation p.H285Q 0.24 tolerated_low_confidence(0.58) benign(0.098) TCGA-AA-3511-01 5 76029308 76029308 T C F2R Missense_Mutation p.Y420H 0.31 deleterious(0) probably_damaging(0.987) TCGA-AA-3511-01 5 79026713 79026713 G C CMYA5 Missense_Mutation p.E709Q 0.13 possibly_damaging(0.857) TCGA-AA-3511-01 5 81601204 81601204 G A ATP6AP1L 5'UTR 0.11 TCGA-AA-3511-01 6 100896554 100896554 C T SIM1 Missense_Mutation p.V182I 0.32 deleterious(0) benign(0.034) TCGA-AA-3511-01 6 108370486 108370486 G C OSTM1 Nonsense_Mutation p.S307* 0.13 TCGA-AA-3511-01 6 121576520 121576520 C T TBC1D32 Missense_Mutation p.E658K 0.34 tolerated(0.79) benign(0.003) TCGA-AA-3511-01 6 136597339 136597339 C A BCLAF1 Missense_Mutation p.V442F 0.11 deleterious(0.01) possibly_damaging(0.607) TCGA-AA-3511-01 6 168464321 168464321 C T FRMD1 Missense_Mutation p.R255Q 0.27 tolerated(0.31) benign(0.136) TCGA-AA-3511-01 6 168708319 168708319 G T DACT2 Silent p.G706G 0.15 TCGA-AA-3511-01 6 2678502 2678502 G A MYLK4 Missense_Mutation p.S331L 0.36 deleterious(0) probably_damaging(0.996) TCGA-AA-3511-01 6 31868670 31868670 A T ZBTB12 Missense_Mutation p.V138D 0.12 tolerated(0.18) possibly_damaging(0.485) TCGA-AA-3511-01 6 32411670 32411670 C T HLA-DRA Missense_Mutation p.R250C 0.20 tolerated(0.23) possibly_damaging(0.843) TCGA-AA-3511-01 6 32826221 32826221 T C PSMB9 Silent p.Y157Y 0.11 TCGA-AA-3511-01 6 3851115 3851115 T C FAM50B 3'UTR 0.08 TCGA-AA-3511-01 6 65300632 65300632 T G EYS Missense_Mutation p.T1710P 0.17 tolerated_low_confidence(0.15) benign(0.399) TCGA-AA-3511-01 6 70071270 70071270 C A BAI3 Missense_Mutation p.P1369T 0.23 tolerated(0.39) benign(0) TCGA-AA-3511-01 6 84885004 84885004 C T KIAA1009 Missense_Mutation p.E576K 0.21 tolerated(0.26) benign(0.023) TCGA-AA-3511-01 7 100491179 100491179 C T ACHE Silent p.P225P 0.22 TCGA-AA-3511-01 7 101840537 101840537 G A CUX1 Missense_Mutation p.D627N 0.17 deleterious(0.02) unknown(0) TCGA-AA-3511-01 7 11022178 11022178 A T PHF14 Nonsense_Mutation p.K98* 0.15 TCGA-AA-3511-01 7 122808425 122808425 T C SLC13A1 Intron 0.12 TCGA-AA-3511-01 7 43519212 43519212 T G HECW1 Missense_Mutation p.F1035V 0.07 deleterious(0.02) probably_damaging(0.983) TCGA-AA-3511-01 7 63529936 63529936 A C ZNF727 Silent p.R59R 0.12 TCGA-AA-3511-01 7 73461086 73461086 C A ELN Missense_Mutation p.P211H 0.09 unknown(0) TCGA-AA-3511-01 7 83610771 83610771 C T SEMA3A Silent p.T506T 0.11 TCGA-AA-3511-01 7 89854501 89854501 G T STEAP2 Silent p.V35V 0.15 TCGA-AA-3511-01 7 92140289 92140289 C G PEX1 Missense_Mutation p.S519T 0.26 tolerated(0.07) possibly_damaging(0.754) TCGA-AA-3511-01 7 94919485 94919485 G A PPP1R9A Missense_Mutation p.R1332Q 0.31 tolerated(0.06) probably_damaging(0.988) TCGA-AA-3511-01 8 107715176 107715176 A C OXR1 Missense_Mutation p.M241L 0.26 deleterious(0.01) benign(0.174) TCGA-AA-3511-01 8 114449032 114449032 C A CSMD3 Nonsense_Mutation p.E18* 0.11 TCGA-AA-3511-01 8 36691178 36691178 G A KCNU1 Splice_Site p.X404_splice 0.17 TCGA-AA-3511-01 8 98699740 98699740 G C MTDH Missense_Mutation p.D218H 0.14 deleterious(0) probably_damaging(0.994) TCGA-AA-3511-01 9 100617778 100617778 T G FOXE1 3'UTR 0.18 TCGA-AA-3511-01 9 108151349 108151349 G A SLC44A1 3'UTR 0.43 TCGA-AA-3511-01 9 113703930 113703930 A T LPAR1 Nonsense_Mutation p.C188* 0.17 TCGA-AA-3511-01 9 121971030 121971030 C T BRINP1 Missense_Mutation p.R371H 0.20 tolerated(0.78) benign(0.001) TCGA-AA-3511-01 9 34290307 34290307 C A KIF24 Missense_Mutation p.G331V 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-3511-01 9 66459934 66459934 G T RP11-262H14.1 RNA 0.25 TCGA-AA-3511-01 9 82267593 82267593 C G TLE4 Missense_Mutation p.A159G 0.28 tolerated(1) benign(0) TCGA-AA-3511-01 X 105152738 105152738 G C NRK Missense_Mutation p.E370Q 0.38 tolerated_low_confidence(0.14) probably_damaging(0.954) TCGA-AA-3511-01 X 108638710 108638710 T G GUCY2F Missense_Mutation p.N762H 0.43 deleterious(0.05) benign(0.001) TCGA-AA-3511-01 X 129801665 129801665 C T ENOX2 Missense_Mutation p.R278Q 0.69 deleterious(0.02) benign(0.09) TCGA-AA-3511-01 X 1424534 1424534 G A CSF2RA Intron 0.46 TCGA-AA-3511-01 X 148571971 148571971 G A IDS Missense_Mutation p.R83W 0.32 deleterious(0.03) possibly_damaging(0.773) TCGA-AA-3511-01 X 153609609 153609609 G T EMD 3'UTR 0.62 TCGA-AA-3511-01 X 36303780 36303780 T G CXorf30 5'UTR 0.22 TCGA-AA-3511-01 X 63410486 63410486 C T AMER1 Missense_Mutation p.R894H 0.44 deleterious(0) probably_damaging(0.989) TCGA-AA-3522-01 11 126146322 126146322 A C FOXRED1 Silent p.P335P 0.24 TCGA-AA-3522-01 15 35234245 35234245 T C AQR Missense_Mutation p.I170V 0.42 tolerated(1) benign(0.001) TCGA-AA-3522-01 15 40912955 40912955 C T CASC5 Missense_Mutation p.L191F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3522-01 17 26696561 26696561 C T VTN Missense_Mutation p.D166N 0.10 tolerated(0.13) benign(0.258) TCGA-AA-3522-01 17 8092669 8092669 G A C17orf59 Silent p.L264L 0.18 TCGA-AA-3522-01 19 54466605 54466605 G A CACNG8 Missense_Mutation p.G70D 0.47 tolerated_low_confidence(0.1) benign(0.412) TCGA-AA-3522-01 19 8609213 8609213 C T MYO1F Missense_Mutation p.A498T 0.11 tolerated(0.41) benign(0.006) TCGA-AA-3522-01 20 29891221 29891221 C A DEFB116 Nonsense_Mutation p.E35* 0.22 TCGA-AA-3522-01 2 164466968 164466968 G A FIGN Silent p.D458D 0.10 TCGA-AA-3522-01 2 242812052 242812052 G T CXXC11 Silent p.L48L 0.26 TCGA-AA-3522-01 2 80782871 80782871 G A CTNNA2 Missense_Mutation p.D532N 0.21 tolerated(0.31) benign(0.106) TCGA-AA-3522-01 2 96798324 96798324 C T ASTL Missense_Mutation p.D198N 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3522-01 3 16646869 16646869 C T DAZL 5'Flank 0.38 TCGA-AA-3522-01 6 112575285 112575285 C T LAMA4 Missense_Mutation p.R23H 0.16 tolerated_low_confidence(0.11) benign(0.086) TCGA-AA-3522-01 6 33169388 33169388 T G SLC39A7 Silent p.A122A 0.42 TCGA-AA-3522-01 6 55300436 55300436 C T HMGCLL1 3'UTR 0.22 TCGA-AA-3556-01 12 109999241 109999241 G A MMAB Missense_Mutation p.T168M 0.28 deleterious(0.02) possibly_damaging(0.796) TCGA-AA-3556-01 12 124914192 124914192 C T NCOR2 Silent p.V372V 0.34 TCGA-AA-3556-01 12 132195845 132195845 G A SFSWAP Missense_Mutation p.G24D 0.09 deleterious_low_confidence(0.03) probably_damaging(0.943) TCGA-AA-3556-01 15 79054874 79054874 G A ADAMTS7 Missense_Mutation p.R1592C 0.54 deleterious(0) probably_damaging(1) TCGA-AA-3556-01 16 67980508 67980508 T C SLC12A4 Missense_Mutation p.K759R 0.10 tolerated(0.32) benign(0.012) TCGA-AA-3556-01 16 775553 775553 C T CCDC78 Missense_Mutation p.E99K 0.36 deleterious(0.02) benign(0.066) TCGA-AA-3556-01 17 42336631 42336631 G A SLC4A1 Missense_Mutation p.P259L 0.25 deleterious(0.01) benign(0.2) TCGA-AA-3556-01 18 56939773 56939773 G A RAX Silent p.T121T 0.22 TCGA-AA-3556-01 19 17435675 17435675 C T ANO8 Missense_Mutation p.R1061Q 0.31 tolerated_low_confidence(0.07) unknown(0) TCGA-AA-3556-01 19 2717760 2717760 C T DIRAS1 Silent p.A15A 0.50 TCGA-AA-3556-01 19 308623 308623 G A MIER2 Silent p.P384P 0.41 TCGA-AA-3556-01 19 30936464 30936464 C T ZNF536 Silent p.H665H 0.39 TCGA-AA-3556-01 19 50173534 50173534 G A BCL2L12 Missense_Mutation p.R248H 0.32 tolerated(0.06) probably_damaging(0.96) TCGA-AA-3556-01 19 51020864 51020864 G A LRRC4B Silent p.S702S 0.30 TCGA-AA-3556-01 19 51586087 51586087 A G KLK14 5'UTR 0.08 TCGA-AA-3556-01 2 98340686 98340686 C T ZAP70 Missense_Mutation p.R63C 0.52 deleterious(0) probably_damaging(0.991) TCGA-AA-3556-01 4 96469948 96469948 G T UNC5C Missense_Mutation p.Q21K 0.34 tolerated_low_confidence(0.87) benign(0.001) TCGA-AA-3556-01 5 140182568 140182568 G A PCDHA3 Missense_Mutation p.A596T 0.23 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AA-3556-01 5 140222982 140222982 G A PCDHA8 Silent p.A692A 0.44 TCGA-AA-3556-01 5 140223096 140223096 C T PCDHA8 Silent p.G730G 0.53 TCGA-AA-3556-01 5 178564887 178564887 G A ADAMTS2 Missense_Mutation p.R612C 0.48 deleterious(0.01) possibly_damaging(0.631) TCGA-AA-3556-01 6 33245938 33245938 G A B3GALT4 Missense_Mutation p.E248K 0.44 tolerated(0.09) benign(0.446) TCGA-AA-3556-01 7 1275577 1275577 T C UNCX Missense_Mutation p.M187T 0.21 deleterious(0.01) possibly_damaging(0.573) TCGA-AA-3556-01 8 142367795 142367795 C T GPR20 Missense_Mutation p.V77I 0.64 tolerated(0.06) probably_damaging(0.927) TCGA-AA-3556-01 8 72756439 72756439 G A MSC 5'UTR 0.37 TCGA-AA-3556-01 X 47044971 47044971 G A RBM10 Missense_Mutation p.R766H 0.68 deleterious(0) probably_damaging(0.996) TCGA-AA-3655-01 10 49634097 49634097 A G MAPK8 Silent p.E285E 0.13 TCGA-AA-3655-01 10 75541877 75541877 A G CHCHD1 Missense_Mutation p.N15S 0.10 tolerated(0.14) benign(0.047) TCGA-AA-3655-01 10 88414658 88414658 G A OPN4 Missense_Mutation p.G40S 0.87 tolerated_low_confidence(0.58) benign(0.003) TCGA-AA-3655-01 11 30921127 30921127 C A DCDC1 Nonstop_Mutation p.*649Lext*? 0.42 TCGA-AA-3655-01 11 57576899 57576900 - A CTNND1 Frame_Shift_Ins p.Q800Tfs*4 0.23 TCGA-AA-3655-01 11 67173158 67173158 G A TBC1D10C Silent p.S151S 0.37 TCGA-AA-3655-01 11 75509429 75509429 G A DGAT2 Missense_Mutation p.D323N 0.41 tolerated(1) benign(0.002) TCGA-AA-3655-01 11 8476355 8476355 A C STK33 Missense_Mutation p.L241R 0.46 deleterious(0) probably_damaging(0.998) TCGA-AA-3655-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.60 deleterious(0) benign(0.361) TCGA-AA-3655-01 12 4737038 4737038 C T AKAP3 Missense_Mutation p.V344I 0.46 tolerated(0.77) probably_damaging(0.999) TCGA-AA-3655-01 12 56101402 56101403 - G ITGA7 Frame_Shift_Ins p.L22Pfs*81 0.35 TCGA-AA-3655-01 13 33635745 33635745 T C KL Silent p.S843S 0.09 TCGA-AA-3655-01 13 86368321 86368321 G A SLITRK6 Silent p.L775L 0.35 TCGA-AA-3655-01 14 100615693 100615693 G C DEGS2 Missense_Mutation p.T146R 0.41 deleterious(0.02) probably_damaging(1) TCGA-AA-3655-01 14 103999025 103999025 G A TRMT61A Silent p.E146E 0.31 TCGA-AA-3655-01 14 106208019 106208019 C T IGHG1 Missense_Mutation p.V262M 0.39 deleterious(0) probably_damaging(0.983) TCGA-AA-3655-01 14 106406038 106406038 T C IGHV6-1 Missense_Mutation p.I7V 0.36 tolerated(0.46) benign(0) TCGA-AA-3655-01 14 26918007 26918007 C A NOVA1 Nonsense_Mutation p.E228* 0.40 TCGA-AA-3655-01 14 28734436 28734436 C T BNIP3P1 RNA 0.21 TCGA-AA-3655-01 14 73137938 73137938 C T DPF3 Missense_Mutation p.G327D 0.36 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AA-3655-01 14 77242547 77242547 C T VASH1 Silent p.D281D 0.37 TCGA-AA-3655-01 15 101432844 101432844 G T ALDH1A3 Missense_Mutation p.D159Y 0.46 deleterious(0) benign(0.265) TCGA-AA-3655-01 15 101858582 101858582 G A PCSK6 Silent p.Y836Y 0.33 TCGA-AA-3655-01 15 50733543 50733543 A T USP8 Intron 0.09 TCGA-AA-3655-01 15 79068580 79068580 C A ADAMTS7 Silent p.R552R 0.46 TCGA-AA-3655-01 16 3293377 3293377 C T MEFV Missense_Mutation p.V704I 0.44 tolerated(1) benign(0.002) TCGA-AA-3655-01 16 67210603 67210603 A G KIAA0895L 3'UTR 0.30 TCGA-AA-3655-01 16 70889155 70889155 G T HYDIN Missense_Mutation p.Q4107K 0.22 benign(0.007) TCGA-AA-3655-01 17 39551221 39551221 C T KRT31 Missense_Mutation p.A326T 0.46 deleterious(0.04) possibly_damaging(0.582) TCGA-AA-3655-01 17 40825798 40825798 C T PLEKHH3 Missense_Mutation p.R118H 0.38 deleterious(0) unknown(0) TCGA-AA-3655-01 17 55183822 55183822 A G AKAP1 Missense_Mutation p.R333G 0.33 tolerated(0.06) benign(0) TCGA-AA-3655-01 17 72436154 72436154 A G GPRC5C Missense_Mutation p.D125G 0.10 deleterious(0.03) possibly_damaging(0.853) TCGA-AA-3655-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.65 tolerated(0.13) possibly_damaging(0.631) TCGA-AA-3655-01 17 79910825 79910825 C T NOTUM 3'UTR 0.08 TCGA-AA-3655-01 18 44549239 44549239 C T TCEB3CL Missense_Mutation p.D354N 0.03 deleterious(0) probably_damaging(0.948) TCGA-AA-3655-01 19 1116050 1116050 G A SBNO2 Missense_Mutation p.R619W 0.37 deleterious(0) probably_damaging(0.991) TCGA-AA-3655-01 19 11327609 11327609 A G DOCK6 Missense_Mutation p.L1292P 0.30 deleterious(0) benign(0.418) TCGA-AA-3655-01 19 14876530 14876530 G A EMR2 Missense_Mutation p.R241C 0.26 deleterious(0.01) possibly_damaging(0.768) TCGA-AA-3655-01 19 15839046 15839046 G A OR10H2 Missense_Mutation p.V65I 0.38 tolerated(0.26) benign(0.001) TCGA-AA-3655-01 19 3452573 3452573 C T NFIC Missense_Mutation p.A393V 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3655-01 19 50100524 50100524 G A PRR12 Missense_Mutation p.A978T 0.67 benign(0.005) TCGA-AA-3655-01 19 52869785 52869785 C T ZNF610 Missense_Mutation p.P385L 0.44 deleterious(0.02) benign(0) TCGA-AA-3655-01 1 109351414 109351415 - TT STXBP3 Frame_Shift_Ins p.V566Lfs*3 0.34 TCGA-AA-3655-01 1 145538741 145538741 G A ITGA10 Missense_Mutation p.R951H 0.21 tolerated(0.31) probably_damaging(0.965) TCGA-AA-3655-01 1 153614770 153614770 C T CHTOP Nonsense_Mutation p.R90* 0.39 TCGA-AA-3655-01 1 158746645 158746645 G A OR6N2 Missense_Mutation p.R261W 0.36 deleterious(0.02) possibly_damaging(0.458) TCGA-AA-3655-01 1 179077099 179077099 C T ABL2 Silent p.T1101T 0.12 TCGA-AA-3655-01 1 201016311 201016311 G A CACNA1S Missense_Mutation p.R1534W 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3655-01 1 215759899 215759899 G A KCTD3 Missense_Mutation p.E230K 0.39 deleterious(0.02) probably_damaging(0.994) TCGA-AA-3655-01 1 228547329 228547329 C T OBSCN Intron 0.35 TCGA-AA-3655-01 1 240071648 240071648 C T CHRM3 Silent p.S299S 0.31 TCGA-AA-3655-01 1 245809435 245809435 G A KIF26B Missense_Mutation p.R704H 0.43 deleterious(0.01) unknown(0) TCGA-AA-3655-01 1 57399102 57399102 C T C8B Silent p.R486R 0.35 TCGA-AA-3655-01 20 20596797 20596797 T C RALGAPA2 Silent p.E526E 0.41 TCGA-AA-3655-01 20 31590443 31590443 C T SUN5 Missense_Mutation p.R54H 0.35 tolerated(0.37) benign(0.002) TCGA-AA-3655-01 20 34459707 34459707 C T PHF20 Missense_Mutation p.P413L 0.37 tolerated(0.55) benign(0.001) TCGA-AA-3655-01 20 41385177 41385177 C T PTPRT Missense_Mutation p.V262I 0.35 tolerated(0.26) benign(0) TCGA-AA-3655-01 20 42143341 42143341 C T L3MBTL1 Missense_Mutation p.R121W 0.47 deleterious(0.01) possibly_damaging(0.711) TCGA-AA-3655-01 20 4707852 4707852 C G PRND 3'UTR 0.34 TCGA-AA-3655-01 20 4880287 4880287 G A SLC23A2 Silent p.Y132Y 0.53 TCGA-AA-3655-01 20 50701502 50701502 C T ZFP64 Missense_Mutation p.R511H 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-AA-3655-01 20 61916199 61916199 G A ARFGAP1 Intron 0.34 TCGA-AA-3655-01 21 19638304 19638304 T C CHODL Silent p.S257S 0.45 TCGA-AA-3655-01 21 31587809 31587809 G T CLDN8 Silent p.I145I 0.34 TCGA-AA-3655-01 22 24057358 24057358 C T KB-1572G7.2 RNA 0.09 TCGA-AA-3655-01 22 42524943 42524943 C T CYP2D6 Missense_Mutation p.R170H 0.80 tolerated(0.31) benign(0.012) TCGA-AA-3655-01 2 152321168 152321168 A G RIF1 Missense_Mutation p.T1712A 0.38 tolerated(0.47) benign(0.001) TCGA-AA-3655-01 2 152402870 152402870 G A NEB Missense_Mutation p.R6819W 0.42 probably_damaging(0.987) TCGA-AA-3655-01 2 201434568 201434568 T C SGOL2 Missense_Mutation p.L219S 0.17 tolerated(0.21) benign(0.02) TCGA-AA-3655-01 2 202606526 202606526 C T ALS2 Missense_Mutation p.R741Q 0.54 tolerated(0.2) benign(0.015) TCGA-AA-3655-01 2 21231277 21231277 C T APOB Silent p.P2821P 0.49 TCGA-AA-3655-01 2 223169040 223169040 C A CCDC140 Missense_Mutation p.A140E 0.41 deleterious_low_confidence(0) unknown(0) TCGA-AA-3655-01 2 31806017 31806017 C T SRD5A2 RNA 0.33 TCGA-AA-3655-01 2 5837977 5837977 G A SOX11 3'UTR 0.36 TCGA-AA-3655-01 2 73430132 73430132 C T NOTO Missense_Mutation p.P113L 0.18 tolerated(1) benign(0.001) TCGA-AA-3655-01 3 113801546 113801546 A G QTRTD1 Silent p.Q319Q 0.43 TCGA-AA-3655-01 3 122255072 122255072 G T PARP9 Missense_Mutation p.Q710K 0.40 deleterious(0) probably_damaging(0.96) TCGA-AA-3655-01 3 126071362 126071362 C T KLF15 Missense_Mutation p.R135Q 0.34 tolerated(0.72) probably_damaging(0.99) TCGA-AA-3655-01 3 132086609 132086609 G A ACPP Silent p.L400L 0.36 TCGA-AA-3655-01 3 50645079 50645079 G A CISH Missense_Mutation p.R263C 0.46 deleterious(0.01) probably_damaging(0.975) TCGA-AA-3655-01 4 123097023 123097023 C A KIAA1109 Silent p.I104I 0.36 TCGA-AA-3655-01 4 146700661 146700661 T C ZNF827 Missense_Mutation p.T796A 0.43 tolerated(0.19) benign(0.007) TCGA-AA-3655-01 4 156841185 156841186 - T TDO2 3'UTR 0.23 TCGA-AA-3655-01 4 184930617 184930617 C T STOX2 Missense_Mutation p.T209M 0.12 tolerated(0.28) benign(0) TCGA-AA-3655-01 4 99313159 99313159 C A RAP1GDS1 Missense_Mutation p.L190M 0.41 tolerated(0.19) probably_damaging(0.997) TCGA-AA-3655-01 5 112175621 112175621 C T APC Nonsense_Mutation p.Q1444* 0.64 TCGA-AA-3655-01 5 13810270 13810270 G A DNAH5 Missense_Mutation p.R2503C 0.53 possibly_damaging(0.689) TCGA-AA-3655-01 5 141248805 141248805 C T PCDH1 Missense_Mutation p.A78T 0.14 tolerated(0.18) benign(0.209) TCGA-AA-3655-01 5 150666876 150666876 G A SLC36A3 Silent p.S254S 0.09 TCGA-AA-3655-01 5 168098392 168098392 T C SLIT3 Missense_Mutation p.N1313S 0.38 tolerated(0.36) benign(0.078) TCGA-AA-3655-01 5 38950546 38950546 G A RICTOR Missense_Mutation p.T1135M 0.37 deleterious(0) probably_damaging(0.93) TCGA-AA-3655-01 6 31935499 31935499 C T SKIV2L Missense_Mutation p.S864L 0.55 deleterious(0.02) benign(0.387) TCGA-AA-3655-01 6 76023006 76023006 C T FILIP1 Missense_Mutation p.E848K 0.39 deleterious(0.03) benign(0.419) TCGA-AA-3655-01 6 76023589 76023589 C G FILIP1 Missense_Mutation p.L653F 0.45 deleterious(0) probably_damaging(0.999) TCGA-AA-3655-01 6 76024155 76024155 C T FILIP1 Missense_Mutation p.D465N 0.37 tolerated(0.2) possibly_damaging(0.907) TCGA-AA-3655-01 7 42005914 42005914 G C GLI3 Silent p.L919L 0.24 TCGA-AA-3655-01 7 43917126 43917126 A G URGCP Missense_Mutation p.F646L 0.30 tolerated(1) probably_damaging(0.994) TCGA-AA-3655-01 7 813802 813802 G A HEATR2 Silent p.A683A 0.30 TCGA-AA-3655-01 7 81613994 81613994 G T CACNA2D1 Nonsense_Mutation p.Y610* 0.19 TCGA-AA-3655-01 7 86811627 86811627 G A DMTF1 Missense_Mutation p.R265Q 0.22 deleterious(0.02) probably_damaging(0.99) TCGA-AA-3655-01 7 94294964 94294964 G A PEG10 3'UTR 0.17 TCGA-AA-3655-01 7 99688230 99688230 G A COPS6 Missense_Mutation p.E147K 0.29 deleterious(0) probably_damaging(0.992) TCGA-AA-3655-01 8 130761751 130761751 C T GSDMC Missense_Mutation p.D412N 0.40 tolerated(0.41) benign(0.158) TCGA-AA-3655-01 8 21768303 21768303 G A DOK2 Missense_Mutation p.R167W 0.30 tolerated(0.2) benign(0.072) TCGA-AA-3655-01 8 27922212 27922212 G A NUGGC Missense_Mutation p.R250C 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-AA-3655-01 8 67064641 67064641 G A TRIM55 Missense_Mutation p.G339R 0.68 tolerated(0.68) benign(0.015) TCGA-AA-3655-01 9 136214971 136214971 T G MED22 5'Flank 0.06 TCGA-AA-3655-01 9 137707450 137707450 G C COL5A1 Missense_Mutation p.G1348A 0.50 unknown(0) TCGA-AA-3655-01 X 134421771 134421771 C A ZNF75D Missense_Mutation p.K277N 0.89 tolerated(0.06) benign(0.022) TCGA-AA-3655-01 X 13618131 13618131 A G EGFL6 Silent p.Q106Q 0.87 TCGA-AA-3655-01 X 63411411 63411411 G A AMER1 Nonsense_Mutation p.R586* 0.91 TCGA-AA-3660-01 10 105939642 105939642 C T WDR96 Missense_Mutation p.D780N 0.29 tolerated(0.5) benign(0.005) TCGA-AA-3660-01 10 108430992 108430992 C A SORCS1 Intron 0.36 TCGA-AA-3660-01 10 128821472 128821472 C T DOCK1 Nonsense_Mutation p.R425* 0.38 TCGA-AA-3660-01 10 60558315 60558315 C T BICC1 Missense_Mutation p.A508V 0.35 tolerated(0.46) benign(0.024) TCGA-AA-3660-01 10 62648343 62648343 G A RHOBTB1 Silent p.A361A 0.32 TCGA-AA-3660-01 10 63760059 63760059 G A ARID5B Missense_Mutation p.E238K 0.38 deleterious(0.04) possibly_damaging(0.835) TCGA-AA-3660-01 10 89474521 89474521 T G PAPSS2 Silent p.S180S 0.33 TCGA-AA-3660-01 11 112126259 112126259 C A PLET1 Nonsense_Mutation p.E80* 0.05 TCGA-AA-3660-01 11 121058602 121058602 C T TECTA Missense_Mutation p.R2021C 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3660-01 11 132177687 132177687 G A NTM Missense_Mutation p.V211M 0.09 deleterious(0) possibly_damaging(0.852) TCGA-AA-3660-01 11 14284414 14284414 G A RP11-21L19.1 RNA 0.36 TCGA-AA-3660-01 11 15222370 15222370 G C INSC Missense_Mutation p.E279Q 0.33 deleterious(0.02) probably_damaging(0.945) TCGA-AA-3660-01 11 16424320 16424320 C G SOX6 Intron 0.30 TCGA-AA-3660-01 11 30034064 30034064 G A KCNA4 Silent p.S54S 0.38 TCGA-AA-3660-01 11 55703344 55703344 T G OR5I1 Missense_Mutation p.H178P 0.42 deleterious(0) possibly_damaging(0.825) TCGA-AA-3660-01 11 78380665 78380665 C T TENM4 Missense_Mutation p.R2242H 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-AA-3660-01 11 83170848 83170848 C T DLG2 3'UTR 0.31 TCGA-AA-3660-01 11 92087552 92087552 T C FAT3 Silent p.N758N 0.38 TCGA-AA-3660-01 12 104376688 104376688 C T TDG Missense_Mutation p.T197M 0.04 deleterious(0) probably_damaging(0.982) TCGA-AA-3660-01 12 113416395 113416395 C T OAS2 5'UTR 0.08 TCGA-AA-3660-01 12 1137425 1137425 C A ERC1 Missense_Mutation p.A119D 0.03 tolerated(0.63) benign(0.014) TCGA-AA-3660-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.81 deleterious(0.03) possibly_damaging(0.876) TCGA-AA-3660-01 12 49433722 49433722 G A KMT2D Missense_Mutation p.R2611C 0.07 probably_damaging(0.997) TCGA-AA-3660-01 12 49494195 49494195 G A LMBR1L Missense_Mutation p.L406F 0.32 deleterious(0) benign(0.318) TCGA-AA-3660-01 12 54894317 54894317 C A NCKAP1L Missense_Mutation p.Q72K 0.36 tolerated(0.18) benign(0.098) TCGA-AA-3660-01 12 57039759 57039759 G A ATP5B 5'UTR 0.50 TCGA-AA-3660-01 12 64377723 64377723 T A SRGAP1 Intron 0.16 TCGA-AA-3660-01 12 72179582 72179582 C T RAB21 3'UTR 0.21 TCGA-AA-3660-01 12 7459144 7459144 G T ACSM4 Missense_Mutation p.A73S 0.74 tolerated(0.96) benign(0.001) TCGA-AA-3660-01 13 103346734 103346734 C T METTL21C Missense_Mutation p.G39R 0.16 tolerated(0.42) benign(0.003) TCGA-AA-3660-01 13 29287298 29287298 C G SLC46A3 Missense_Mutation p.E193D 0.22 tolerated(0.46) benign(0.145) TCGA-AA-3660-01 13 32527284 32527284 C T EEF1DP3 RNA 0.51 TCGA-AA-3660-01 13 84456178 84456180 TGT - SLITRK1 5'UTR 0.15 TCGA-AA-3660-01 14 106235879 106235879 G C IGHG3 Missense_Mutation p.Q277E 0.24 tolerated(0.33) benign(0.014) TCGA-AA-3660-01 14 58698961 58698961 G A ACTR10 Missense_Mutation p.A350T 0.16 tolerated(0.16) possibly_damaging(0.486) TCGA-AA-3660-01 14 93397841 93397841 G A CHGA Missense_Mutation p.G201E 0.29 tolerated(1) benign(0.023) TCGA-AA-3660-01 15 64967368 64967368 G A ZNF609 Missense_Mutation p.G772E 0.37 deleterious(0.03) possibly_damaging(0.65) TCGA-AA-3660-01 15 68378933 68378933 C A PIAS1 Nonsense_Mutation p.S105* 0.24 TCGA-AA-3660-01 15 83932937 83932937 G A BNC1 Missense_Mutation p.R356W 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3660-01 15 85326446 85326446 C T ZNF592 Silent p.G180G 0.31 TCGA-AA-3660-01 15 89074234 89074234 G T DET1 Missense_Mutation p.Q246K 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3660-01 16 1260962 1260962 G A CACNA1H Missense_Mutation p.R1405Q 0.44 deleterious(0) probably_damaging(0.997) TCGA-AA-3660-01 16 24931322 24931322 C T ARHGAP17 3'UTR 0.12 TCGA-AA-3660-01 16 57318421 57318421 C T PLLP Missense_Mutation p.R11Q 0.09 tolerated(0.47) benign(0.005) TCGA-AA-3660-01 16 57687931 57687932 TG - GPR56 Frame_Shift_Del p.V219Efs*66 0.28 TCGA-AA-3660-01 16 603415 603415 G A CAPN15 Missense_Mutation p.A1054T 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3660-01 16 72056285 72056285 C T DHODH Missense_Mutation p.R244W 0.32 deleterious(0.04) possibly_damaging(0.728) TCGA-AA-3660-01 16 88501172 88501172 C A ZNF469 Missense_Mutation p.Q2404K 0.24 benign(0.262) TCGA-AA-3660-01 17 1375229 1375229 G A MYO1C Missense_Mutation p.R665C 0.52 deleterious(0) probably_damaging(0.976) TCGA-AA-3660-01 17 21318813 21318813 C T KCNJ12 Silent p.C53C 0.17 TCGA-AA-3660-01 17 34956745 34956745 C T DHRS11 3'UTR 0.30 TCGA-AA-3660-01 17 39503153 39503153 G A KRT33A Silent p.I273I 0.30 TCGA-AA-3660-01 17 40266600 40266600 C T KAT2A Missense_Mutation p.R681H 0.25 deleterious(0) possibly_damaging(0.858) TCGA-AA-3660-01 17 65104792 65104792 G A HELZ Missense_Mutation p.R1514W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-AA-3660-01 17 72916202 72916202 C T USH1G Silent p.S243S 0.33 TCGA-AA-3660-01 17 73887374 73887374 G A TRIM65 Missense_Mutation p.S347L 0.26 deleterious(0) possibly_damaging(0.808) TCGA-AA-3660-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.55 tolerated(0.13) possibly_damaging(0.631) TCGA-AA-3660-01 18 21123512 21123512 C T NPC1 Missense_Mutation p.E718K 0.54 deleterious(0) possibly_damaging(0.677) TCGA-AA-3660-01 18 30260415 30260415 C T KLHL14 Silent p.A462A 0.54 TCGA-AA-3660-01 18 44087511 44087511 G A LOXHD1 Silent p.S783S 0.12 TCGA-AA-3660-01 18 56184277 56184277 G A ALPK2 Missense_Mutation p.R1935C 0.64 deleterious(0) probably_damaging(1) TCGA-AA-3660-01 18 74091248 74091248 G A ZNF516 Missense_Mutation p.A941V 0.62 tolerated(0.23) benign(0.023) TCGA-AA-3660-01 19 19655094 19655094 C T CILP2 Silent p.P580P 0.44 TCGA-AA-3660-01 19 42396114 42396114 G A ARHGEF1 Missense_Mutation p.D97N 0.29 deleterious(0) probably_damaging(0.995) TCGA-AA-3660-01 19 49517793 49517793 G A RUVBL2 Missense_Mutation p.D352N 0.31 deleterious(0) probably_damaging(0.992) TCGA-AA-3660-01 19 54445464 54445464 G A CACNG7 Missense_Mutation p.D249N 0.07 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-AA-3660-01 19 55301511 55301511 G A CTB-61M7.1 RNA 0.34 TCGA-AA-3660-01 19 6678264 6678264 C T C3 Silent p.T1583T 0.41 TCGA-AA-3660-01 1 1021390 1021390 C G C1orf159 Missense_Mutation p.A105P 0.26 deleterious(0.01) benign(0.417) TCGA-AA-3660-01 1 104116343 104116343 G A AMY2B Missense_Mutation p.R176H 0.31 deleterious(0.01) possibly_damaging(0.777) TCGA-AA-3660-01 1 115277124 115277124 C T CSDE1 Missense_Mutation p.R220H 0.07 tolerated(0.14) benign(0.139) TCGA-AA-3660-01 1 1226771 1226771 C T SCNN1D Silent p.R730R 0.04 TCGA-AA-3660-01 1 13839711 13839711 C T LRRC38 Silent p.S126S 0.26 TCGA-AA-3660-01 1 148017619 148017619 C T NBPF14 Missense_Mutation p.D228N 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-AA-3660-01 1 148932814 148932814 G T RP11-14N7.2 RNA 0.07 TCGA-AA-3660-01 1 149879385 149879385 C T SV2A Silent p.K515K 0.29 TCGA-AA-3660-01 1 158549288 158549288 C A OR10X1 Missense_Mutation p.M134I 0.41 deleterious(0) probably_damaging(0.985) TCGA-AA-3660-01 1 160128900 160128900 C T ATP1A4 Missense_Mutation p.R212W 0.33 deleterious(0.01) possibly_damaging(0.905) TCGA-AA-3660-01 1 160314282 160314282 G A NCSTN Intron 0.05 TCGA-AA-3660-01 1 161166610 161166610 C T ADAMTS4 Missense_Mutation p.A232T 0.45 tolerated(0.52) benign(0.086) TCGA-AA-3660-01 1 181452800 181452800 G A CACNA1E 5'Flank 0.21 TCGA-AA-3660-01 1 22987456 22987456 G A C1QB Silent p.S113S 0.23 TCGA-AA-3660-01 1 23713810 23713811 AG - TCEA3 Frame_Shift_Del p.F308Pfs*13 0.28 TCGA-AA-3660-01 1 247592939 247592939 C T NLRP3 Silent p.L737L 0.26 TCGA-AA-3660-01 1 93698049 93698049 G A CCDC18 Missense_Mutation p.V840I 0.35 tolerated(0.5) benign(0.044) TCGA-AA-3660-01 1 94655554 94655554 A C ARHGAP29 Missense_Mutation p.L456R 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-3660-01 20 2448288 2448288 C A SNRPB Missense_Mutation p.L40F 0.76 tolerated(0.05) possibly_damaging(0.737) TCGA-AA-3660-01 20 43851702 43851702 C T SEMG2 Nonsense_Mutation p.R477* 0.11 TCGA-AA-3660-01 20 44527702 44527702 C T PLTP Missense_Mutation p.G454R 0.43 deleterious(0) probably_damaging(0.994) TCGA-AA-3660-01 20 57430374 57430374 G A GNAS Missense_Mutation p.R685H 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3660-01 20 6015138 6015149 TGGCAGCTTCTT - CRLS1 In_Frame_Del p.S256_A259del 0.22 TCGA-AA-3660-01 20 62200595 62200595 C T HELZ2 Missense_Mutation p.V332M 0.11 tolerated(0.1) benign(0.015) TCGA-AA-3660-01 21 22841097 22841097 A G NCAM2 Missense_Mutation p.Y630C 0.11 deleterious(0) probably_damaging(0.984) TCGA-AA-3660-01 22 39078338 39078338 C T TOMM22 Missense_Mutation p.T43I 0.21 deleterious(0.04) possibly_damaging(0.589) TCGA-AA-3660-01 22 50192665 50192665 G A BRD1 Missense_Mutation p.R543C 0.48 deleterious(0) possibly_damaging(0.641) TCGA-AA-3660-01 22 50897722 50897722 G A SBF1 Missense_Mutation p.T1263M 0.09 deleterious(0.03) probably_damaging(0.976) TCGA-AA-3660-01 2 179396214 179396214 C T TTN Missense_Mutation p.R35043H 0.09 TCGA-AA-3660-01 2 179647683 179647683 C A TTN Nonsense_Mutation p.E984* 0.24 TCGA-AA-3660-01 2 180843005 180843005 A T CWC22 Missense_Mutation p.S165T 0.28 deleterious(0) possibly_damaging(0.531) TCGA-AA-3660-01 2 182409449 182409449 C A CERKL Missense_Mutation p.R474I 0.63 deleterious(0) probably_damaging(0.994) TCGA-AA-3660-01 2 198288681 198288681 G C SF3B1 Missense_Mutation p.R16G 0.64 tolerated_low_confidence(0.07) benign(0.015) TCGA-AA-3660-01 2 21234035 21234035 G A APOB Missense_Mutation p.P1902L 0.30 probably_damaging(0.998) TCGA-AA-3660-01 2 216251579 216251579 C T FN1 Missense_Mutation p.R1482H 0.08 deleterious(0.01) probably_damaging(0.968) TCGA-AA-3660-01 2 219894232 219894232 C G CCDC108 Missense_Mutation p.A515P 0.06 tolerated(1) benign(0.017) TCGA-AA-3660-01 2 220346370 220346370 G A SPEG Missense_Mutation p.A1845T 0.72 possibly_damaging(0.771) TCGA-AA-3660-01 2 220432023 220432023 G A OBSL1 Silent p.H603H 0.14 TCGA-AA-3660-01 2 33952510 33952510 G A AC009499.1 Intron 0.60 TCGA-AA-3660-01 2 89292139 89292139 G A IGKV1-8 Missense_Mutation p.A45V 0.05 deleterious(0.02) benign(0.105) TCGA-AA-3660-01 3 100972552 100972552 C T IMPG2 Silent p.P409P 0.31 TCGA-AA-3660-01 3 112991521 112991521 C T BOC Missense_Mutation p.A311V 0.06 tolerated(0.08) benign(0.272) TCGA-AA-3660-01 3 128598452 128598452 C T ACAD9 5'Flank 0.19 TCGA-AA-3660-01 3 158364627 158364627 A G GFM1 Missense_Mutation p.T155A 0.25 deleterious(0) probably_damaging(0.94) TCGA-AA-3660-01 3 16475449 16475449 C T RFTN1 Missense_Mutation p.A81T 0.44 tolerated(0.16) benign(0.187) TCGA-AA-3660-01 3 172070645 172070645 C T FNDC3B Missense_Mutation p.T856M 0.19 deleterious(0.01) possibly_damaging(0.631) TCGA-AA-3660-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-AA-3660-01 3 182812387 182812387 C T MCCC1 Nonsense_Mutation p.W32* 0.26 TCGA-AA-3660-01 3 185214728 185214728 A G TMEM41A Missense_Mutation p.L54P 0.09 deleterious(0) probably_damaging(0.971) TCGA-AA-3660-01 3 195513587 195513587 T A MUC4 Missense_Mutation p.T1622S 0.47 benign(0.012) TCGA-AA-3660-01 3 195513601 195513601 A G MUC4 Missense_Mutation p.L1617P 0.45 benign(0) TCGA-AA-3660-01 3 39307237 39307237 G A CX3CR1 Missense_Mutation p.T287M 0.27 deleterious(0.02) probably_damaging(0.932) TCGA-AA-3660-01 3 432684 432684 C T CHL1 Missense_Mutation p.P878L 0.36 tolerated(0.28) possibly_damaging(0.691) TCGA-AA-3660-01 3 49947595 49947595 G A MON1A Missense_Mutation p.R543C 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3660-01 3 50230811 50230812 - CATCC GNAT1 Frame_Shift_Ins p.Q90Pfs*16 0.39 TCGA-AA-3660-01 3 58517448 58517448 C - ACOX2 Frame_Shift_Del p.S226Vfs*32 0.28 TCGA-AA-3660-01 3 78667089 78667089 C T ROBO1 Silent p.A1326A 0.03 TCGA-AA-3660-01 3 9796555 9796555 G A OGG1 Missense_Mutation p.G245R 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3660-01 4 114279791 114279791 G A ANK2 Silent p.A3339A 0.40 TCGA-AA-3660-01 4 126242250 126242250 G T FAT4 Nonsense_Mutation p.E1562* 0.28 TCGA-AA-3660-01 4 140213729 140213729 T G NDUFC1 Missense_Mutation p.Y69S 0.34 deleterious(0) probably_damaging(0.971) TCGA-AA-3660-01 4 154939 154939 T C ZNF718 RNA 0.32 TCGA-AA-3660-01 4 155719302 155719302 T C RBM46 Missense_Mutation p.V164A 0.37 deleterious(0) benign(0.238) TCGA-AA-3660-01 4 3415805 3415805 C T RGS12 Missense_Mutation p.T676M 0.29 deleterious(0) possibly_damaging(0.724) TCGA-AA-3660-01 4 36069844 36069844 G A ARAP2 Silent p.S1600S 0.36 TCGA-AA-3660-01 4 38104684 38104684 C T TBC1D1 Silent p.H821H 0.18 TCGA-AA-3660-01 4 52862151 52862151 C T LRRC66 Missense_Mutation p.R346K 0.37 tolerated(1) benign(0.008) TCGA-AA-3660-01 4 56726589 56726589 G A EXOC1 Missense_Mutation p.R46H 0.25 tolerated(0.1) possibly_damaging(0.891) TCGA-AA-3660-01 4 83350507 83350507 G A HNRNPDL Missense_Mutation p.P113S 0.39 deleterious_low_confidence(0.03) benign(0.066) TCGA-AA-3660-01 5 112175390 112175390 C T APC Nonsense_Mutation p.Q1367* 0.30 TCGA-AA-3660-01 5 128362978 128362978 C A SLC27A6 Missense_Mutation p.Q470K 0.38 tolerated(0.27) benign(0.014) TCGA-AA-3660-01 5 130831329 130831329 C T RAPGEF6 Missense_Mutation p.V482I 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-3660-01 5 135282921 135282921 A T LECT2 3'UTR 0.17 TCGA-AA-3660-01 5 140257216 140257216 C T PCDHA12 Missense_Mutation p.A720V 0.31 tolerated_low_confidence(0.15) benign(0.023) TCGA-AA-3660-01 5 140306458 140306458 C T PCDHAC1 5'Flank 0.38 TCGA-AA-3660-01 5 140554315 140554315 C T PCDHB7 Silent p.R633R 0.19 TCGA-AA-3660-01 5 179729580 179729580 C T GFPT2 Missense_Mutation p.R616H 0.32 tolerated(0.1) benign(0.049) TCGA-AA-3660-01 5 80640029 80640029 A G ACOT12 Silent p.D310D 0.27 TCGA-AA-3660-01 5 80911291 80911291 C T SSBP2 Splice_Site p.X94_splice 0.26 TCGA-AA-3660-01 6 84304151 84304151 G A SNAP91 Silent p.A458A 0.67 TCGA-AA-3660-01 7 100085827 100085827 G A NYAP1 Silent p.P161P 0.05 TCGA-AA-3660-01 7 106508522 106508522 G T PIK3CG Missense_Mutation p.E172D 0.17 deleterious(0) probably_damaging(0.997) TCGA-AA-3660-01 7 120969666 120969666 C T WNT16 Silent p.C47C 0.06 TCGA-AA-3660-01 7 122261598 122261598 G T CADPS2 Missense_Mutation p.D347E 0.05 tolerated(0.07) benign(0.11) TCGA-AA-3660-01 7 150217651 150217651 G A GIMAP7 Missense_Mutation p.E197K 0.62 tolerated(0.24) benign(0.009) TCGA-AA-3660-01 7 2269662 2269662 G A MAD1L1 Missense_Mutation p.S36L 0.53 deleterious(0.03) benign(0.36) TCGA-AA-3660-01 7 2472670 2472670 C T CHST12 Silent p.C132C 0.09 TCGA-AA-3660-01 7 33102362 33102362 C T NT5C3A 5'UTR 0.50 TCGA-AA-3660-01 7 41729753 41729754 - TCC INHBA In_Frame_Ins p.G258_K259insR 0.21 TCGA-AA-3660-01 7 4998642 4998642 C T MMD2 Missense_Mutation p.A3T 0.51 tolerated_low_confidence(0.35) benign(0.001) TCGA-AA-3660-01 7 5104894 5104896 TTC - RBAK In_Frame_Del p.F604del 0.48 TCGA-AA-3660-01 7 6438307 6438307 C T RAC1 Silent p.Y80Y 0.07 TCGA-AA-3660-01 8 144652715 144652715 C T MROH6 Missense_Mutation p.R278H 0.13 tolerated(0.17) benign(0.006) TCGA-AA-3660-01 8 145007467 145007467 T C PLEC Missense_Mutation p.E576G 0.05 unknown(0) TCGA-AA-3660-01 8 17409482 17409482 G A SLC7A2 Missense_Mutation p.A388T 0.42 deleterious(0.02) possibly_damaging(0.875) TCGA-AA-3660-01 8 25343300 25343300 C A CDCA2 Nonsense_Mutation p.S464* 0.07 TCGA-AA-3660-01 8 51314806 51314806 C G SNTG1 Missense_Mutation p.Q22E 0.26 tolerated(0.96) benign(0) TCGA-AA-3660-01 8 59059561 59059561 C T FAM110B Missense_Mutation p.R258W 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3660-01 8 73849625 73849625 G A KCNB2 Missense_Mutation p.D679N 0.20 tolerated_low_confidence(0.31) benign(0.001) TCGA-AA-3660-01 8 77896195 77896195 C A PEX2 Missense_Mutation p.A74S 0.05 tolerated(0.13) possibly_damaging(0.641) TCGA-AA-3660-01 8 97274373 97274375 CTT - PTDSS1 In_Frame_Del p.F37del 0.21 TCGA-AA-3660-01 8 98288648 98288648 A G TSPYL5 3'UTR 0.09 TCGA-AA-3660-01 8 99441490 99441490 G A KCNS2 Missense_Mutation p.R428H 0.19 tolerated(0.08) probably_damaging(0.987) TCGA-AA-3660-01 9 119129931 119129931 G A PAPPA Silent p.E1501E 0.24 TCGA-AA-3660-01 9 133961020 133961020 G A LAMC3 Silent p.A1380A 0.24 TCGA-AA-3660-01 9 138380615 138380615 C G PPP1R26 3'UTR 0.13 TCGA-AA-3660-01 9 14746360 14746360 C A FREM1 Missense_Mutation p.C2082F 0.60 deleterious(0) probably_damaging(0.989) TCGA-AA-3660-01 9 95588806 95588806 G T ANKRD19P Splice_Site 0.06 TCGA-AA-3660-01 X 110653512 110653512 G A DCX Nonsense_Mutation p.R120* 0.28 TCGA-AA-3660-01 X 118370544 118370544 T G PGRMC1 Missense_Mutation p.F73C 0.11 deleterious(0) probably_damaging(0.991) TCGA-AA-3660-01 X 125298907 125298907 G A DCAF12L2 Missense_Mutation p.P334L 0.25 tolerated(0.58) benign(0.003) TCGA-AA-3660-01 X 26213435 26213435 G T MAGEB6 3'UTR 0.05 TCGA-AA-3660-01 X 31854923 31854923 G T DMD Missense_Mutation p.A2371E 0.11 benign(0.005) TCGA-AA-3660-01 X 3235677 3235677 C T MXRA5 Silent p.A2015A 0.07 TCGA-AA-3660-01 X 37029325 37029325 G T FAM47C Missense_Mutation p.G948W 0.38 tolerated(1) benign(0.013) TCGA-AA-3660-01 X 48370783 48370783 C T PORCN Missense_Mutation p.T148M 0.25 tolerated(0.05) benign(0.202) TCGA-AA-3660-01 X 73961697 73961697 C A KIAA2022 Nonsense_Mutation p.E899* 0.21 TCGA-AA-3660-01 X 79283562 79283562 C T TBX22 Silent p.G312G 0.15 TCGA-AA-3660-01 X 90691556 90691556 C A PABPC5 Nonsense_Mutation p.S327* 0.20 TCGA-AA-3662-01 10 101474295 101474295 A G COX15 3'UTR 0.09 TCGA-AA-3662-01 10 114710419 114710419 T A TCF7L2 5'UTR 0.36 TCGA-AA-3662-01 10 124457863 124457863 G A C10orf120 Missense_Mutation p.P132S 0.34 tolerated(0.5) benign(0.033) TCGA-AA-3662-01 10 21807500 21807500 C G SKIDA1 5'UTR 0.26 TCGA-AA-3662-01 10 27459183 27459183 G A MASTL Missense_Mutation p.G432E 0.27 tolerated(1) benign(0.003) TCGA-AA-3662-01 10 51087842 51087842 G C PARG Missense_Mutation p.S137C 0.30 deleterious(0.01) possibly_damaging(0.615) TCGA-AA-3662-01 10 73464873 73464873 C T CDH23 Missense_Mutation p.T572M 0.38 deleterious(0.01) probably_damaging(1) TCGA-AA-3662-01 10 81273808 81273808 G T EIF5AL1 3'UTR 0.06 TCGA-AA-3662-01 11 1162271 1162271 G A MUC5AC Missense_Mutation p.A594T 0.35 tolerated(0.12) benign(0.203) TCGA-AA-3662-01 11 120833172 120833172 G A GRIK4 Missense_Mutation p.R683H 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3662-01 11 124180531 124180531 G T OR8D1 Silent p.G44G 0.32 TCGA-AA-3662-01 11 133790675 133790675 G A IGSF9B Missense_Mutation p.P982L 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3662-01 11 36595136 36595136 C T RAG1 Silent p.N94N 0.26 TCGA-AA-3662-01 11 46439591 46439591 G A AMBRA1 Silent p.N906N 0.40 TCGA-AA-3662-01 11 55761425 55761425 A G OR5F1 Missense_Mutation p.F226S 0.23 deleterious(0) possibly_damaging(0.579) TCGA-AA-3662-01 12 102559607 102559609 TTA - PARPBP In_Frame_Del p.I257del 0.24 TCGA-AA-3662-01 12 4923234 4923234 T C KCNA6 3'UTR 0.26 TCGA-AA-3662-01 12 51863568 51863568 G A SLC4A8 Missense_Mutation p.R507H 0.43 tolerated(0.28) benign(0.012) TCGA-AA-3662-01 12 64377819 64377819 C T SRGAP1 Nonsense_Mutation p.R54* 0.46 TCGA-AA-3662-01 12 88383074 88383074 C A C12orf50 Nonsense_Mutation p.E223* 0.42 TCGA-AA-3662-01 12 91348690 91348690 G A CCER1 5'UTR 0.40 TCGA-AA-3662-01 12 97078926 97078926 C T C12orf55 Missense_Mutation p.P1975L 0.27 tolerated(0.3) benign(0.001) TCGA-AA-3662-01 13 33684131 33684131 G A STARD13 Silent p.L976L 0.54 TCGA-AA-3662-01 13 36905692 36905692 C T SPG20 Silent p.P284P 0.60 TCGA-AA-3662-01 13 37453538 37453538 G A SMAD9 Missense_Mutation p.R97C 0.15 deleterious(0.01) probably_damaging(1) TCGA-AA-3662-01 14 93275854 93275854 G A GOLGA5 Missense_Mutation p.E328K 0.44 deleterious(0) probably_damaging(0.997) TCGA-AA-3662-01 15 27572153 27572153 C T GABRG3 Silent p.D156D 0.17 TCGA-AA-3662-01 15 51791307 51791307 C A DMXL2 Missense_Mutation p.V1372L 0.40 deleterious(0) probably_damaging(0.983) TCGA-AA-3662-01 15 59191914 59191914 A G SLTM Missense_Mutation p.I271T 0.47 tolerated(0.2) unknown(0) TCGA-AA-3662-01 15 64966952 64966952 A G ZNF609 Silent p.E633E 0.25 TCGA-AA-3662-01 15 73044905 73044905 C A ADPGK Missense_Mutation p.R423L 0.25 tolerated(0.23) benign(0.017) TCGA-AA-3662-01 15 86312074 86312074 T C KLHL25 Missense_Mutation p.K323R 0.42 tolerated(0.43) possibly_damaging(0.824) TCGA-AA-3662-01 15 90784558 90784558 C T GDPGP1 Missense_Mutation p.R140W 0.20 deleterious(0) probably_damaging(0.96) TCGA-AA-3662-01 16 28913312 28913312 C T ATP2A1 Silent p.I743I 0.49 TCGA-AA-3662-01 16 30977251 30977251 G T SETD1A Missense_Mutation p.Q683H 0.52 benign(0.216) TCGA-AA-3662-01 16 48226474 48226474 G A ABCC11 Missense_Mutation p.T888M 0.53 deleterious(0.04) possibly_damaging(0.73) TCGA-AA-3662-01 16 86601001 86601001 C T FOXC2 Silent p.S20S 0.23 TCGA-AA-3662-01 16 88494622 88494622 C T ZNF469 Silent p.F248F 0.18 TCGA-AA-3662-01 17 39658629 39658629 G T KRT13 Missense_Mutation p.A414D 0.38 deleterious(0.01) probably_damaging(0.93) TCGA-AA-3662-01 17 46262155 46262155 G A SKAP1 Missense_Mutation p.P166L 0.30 tolerated(0.25) possibly_damaging(0.514) TCGA-AA-3662-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.49 deleterious(0) probably_damaging(0.995) TCGA-AA-3662-01 17 77768527 77768527 C T CBX8 Silent p.E359E 0.36 TCGA-AA-3662-01 18 77227673 77227673 G A NFATC1 Intron 0.34 TCGA-AA-3662-01 19 20807828 20807828 G T ZNF626 Nonsense_Mutation p.Y285* 0.30 TCGA-AA-3662-01 19 3909577 3909577 C A ATCAY Silent p.I247I 0.29 TCGA-AA-3662-01 19 39995967 39995967 C T DLL3 Silent p.N323N 0.61 TCGA-AA-3662-01 19 47491293 47491293 A G ARHGAP35 Missense_Mutation p.M1292V 0.08 tolerated(1) benign(0.041) TCGA-AA-3662-01 19 5265110 5265110 G A PTPRS Silent p.S159S 0.69 TCGA-AA-3662-01 19 56369915 56369915 G T NLRP4 Nonsense_Mutation p.E386* 0.52 TCGA-AA-3662-01 1 104297182 104297182 C T AMY1C Missense_Mutation p.H314Y 0.16 deleterious(0) probably_damaging(0.98) TCGA-AA-3662-01 1 155255566 155255566 G A HCN3 Missense_Mutation p.A430T 0.15 tolerated(0.13) benign(0.115) TCGA-AA-3662-01 1 175372551 175372551 C T TNR Missense_Mutation p.R234Q 0.27 tolerated(0.16) benign(0.042) TCGA-AA-3662-01 1 181727125 181727125 C T CACNA1E Missense_Mutation p.R1458C 0.44 deleterious(0.03) possibly_damaging(0.689) TCGA-AA-3662-01 1 197030961 197030961 C G F13B Missense_Mutation p.C135S 0.17 deleterious(0) probably_damaging(1) TCGA-AA-3662-01 1 247171288 247171288 G A ZNF695 5'UTR 0.50 TCGA-AA-3662-01 1 248436873 248436873 C T OR2T33 Missense_Mutation p.D82N 0.20 tolerated(0.91) benign(0.008) TCGA-AA-3662-01 1 248458259 248458259 G T OR2T12 Missense_Mutation p.P208T 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3662-01 1 39878075 39878075 A C KIAA0754 Missense_Mutation p.K577T 0.56 benign(0.002) TCGA-AA-3662-01 1 5924066 5924066 C T NPHP4 Missense_Mutation p.E1342K 0.27 tolerated(0.09) benign(0.014) TCGA-AA-3662-01 1 70505050 70505050 C T LRRC7 Silent p.Y1143Y 0.28 TCGA-AA-3662-01 20 20056176 20056176 G A C20orf26 Silent p.P161P 0.45 TCGA-AA-3662-01 20 45801425 45801425 G A EYA2 Missense_Mutation p.V370M 0.35 deleterious(0) probably_damaging(0.983) TCGA-AA-3662-01 20 45905418 45905418 G A ZMYND8 Missense_Mutation p.R374C 0.39 deleterious(0) probably_damaging(0.975) TCGA-AA-3662-01 21 32598253 32598253 G A TIAM1 Missense_Mutation p.T533M 0.29 deleterious(0) probably_damaging(0.997) TCGA-AA-3662-01 22 32108640 32108640 C G PRR14L Missense_Mutation p.D1729H 0.32 tolerated(0.08) possibly_damaging(0.789) TCGA-AA-3662-01 22 50637514 50637514 A T TRABD 3'UTR 0.31 TCGA-AA-3662-01 2 101643910 101643910 G T TBC1D8 Silent p.R804R 0.48 TCGA-AA-3662-01 2 113147662 113147662 G A RGPD8 Missense_Mutation p.R954W 0.52 deleterious(0) benign(0.024) TCGA-AA-3662-01 2 11731750 11731750 C T GREB1 Intron 0.54 TCGA-AA-3662-01 2 119600757 119600757 G A EN1 Silent p.A312A 0.27 TCGA-AA-3662-01 2 12880519 12880519 G A TRIB2 Missense_Mutation p.D211N 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3662-01 2 155098571 155098571 C A GALNT13 Missense_Mutation p.L114I 0.23 deleterious(0) possibly_damaging(0.551) TCGA-AA-3662-01 2 220420993 220420993 C T OBSL1 Missense_Mutation p.R1453Q 0.22 tolerated(0.15) benign(0.091) TCGA-AA-3662-01 2 238277372 238277372 G A COL6A3 Silent p.I1578I 0.24 TCGA-AA-3662-01 2 48915986 48915986 T C LHCGR Missense_Mutation p.Y317C 0.17 tolerated(0.08) possibly_damaging(0.619) TCGA-AA-3662-01 2 75874007 75874007 T C MRPL19 Missense_Mutation p.L25P 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.653) TCGA-AA-3662-01 2 96047366 96047366 T A KCNIP3 Missense_Mutation p.I157N 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-AA-3662-01 3 48205848 48205848 C T CDC25A Missense_Mutation p.R424H 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3662-01 3 50229186 50229186 A - GNAT1 Frame_Shift_Del p.K10Sfs*10 0.27 TCGA-AA-3662-01 3 53003139 53003139 G A SFMBT1 Silent p.N2N 0.20 TCGA-AA-3662-01 3 62518688 62518688 C T CADPS Missense_Mutation p.A717T 0.36 deleterious(0.04) possibly_damaging(0.499) TCGA-AA-3662-01 4 134071879 134071879 C T PCDH10 Missense_Mutation p.A195V 0.33 tolerated(0.09) possibly_damaging(0.453) TCGA-AA-3662-01 4 17711110 17711110 C T FAM184B Missense_Mutation p.R100H 0.61 tolerated(0.15) benign(0.069) TCGA-AA-3662-01 4 83793212 83793212 G A SEC31A Missense_Mutation p.P223S 0.62 deleterious(0) probably_damaging(0.937) TCGA-AA-3662-01 4 9250357 9250357 T A USP17L18 Translation_Start_Site p.M1? 0.11 deleterious(0) probably_damaging(0.994) TCGA-AA-3662-01 5 112175341 112175342 - G APC Frame_Shift_Ins p.A1351Gfs*3 0.42 TCGA-AA-3662-01 5 125887732 125887732 A G ALDH7A1 Missense_Mutation p.L433P 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3662-01 5 82833012 82833012 C A VCAN Missense_Mutation p.A1397E 0.24 tolerated(0.74) benign(0.02) TCGA-AA-3662-01 6 132910338 132910338 G T TAAR5 Missense_Mutation p.A163E 0.54 deleterious(0.01) possibly_damaging(0.529) TCGA-AA-3662-01 6 154412346 154412346 C T OPRM1 Silent p.Y394Y 0.21 TCGA-AA-3662-01 6 24145856 24145856 C T NRSN1 Silent p.I90I 0.51 TCGA-AA-3662-01 6 27776036 27776036 A G HIST1H2AI Missense_Mutation p.T17A 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-AA-3662-01 6 32049373 32049373 C T RNA5SP206 5'Flank 0.20 TCGA-AA-3662-01 6 46977920 46977920 C A GPR110 Silent p.P417P 0.54 TCGA-AA-3662-01 7 128492798 128492798 G A FLNC Missense_Mutation p.R1999Q 0.59 tolerated(0.09) possibly_damaging(0.482) TCGA-AA-3662-01 7 151904487 151904487 T A KMT2C Nonsense_Mutation p.K1247* 0.59 TCGA-AA-3662-01 7 33397477 33397477 A G BBS9 Silent p.R521R 0.18 TCGA-AA-3662-01 7 99565998 99565998 G A AZGP1 Silent p.S131S 0.37 TCGA-AA-3662-01 8 10465434 10465434 C T RP1L1 Silent p.P2058P 0.26 TCGA-AA-3662-01 8 442390 442390 C G TDRP Intron 0.26 TCGA-AA-3662-01 8 54141939 54141939 C T OPRK1 Missense_Mutation p.R354Q 0.20 tolerated(0.8) benign(0.05) TCGA-AA-3662-01 8 97156945 97156945 G A GDF6 Missense_Mutation p.T405M 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3662-01 8 99129266 99129266 G A HRSP12 Missense_Mutation p.P20L 0.12 deleterious(0.02) possibly_damaging(0.647) TCGA-AA-3662-01 9 124544627 124544627 G A DAB2IP Silent p.S1112S 0.48 TCGA-AA-3662-01 9 38575598 38575598 C G ANKRD18A Missense_Mutation p.E947Q 0.24 deleterious(0.01) possibly_damaging(0.728) TCGA-AA-3662-01 9 6536070 6536070 C A GLDC Silent p.P944P 0.17 TCGA-AA-3662-01 X 106871752 106871752 C T PRPS1 5'UTR 0.28 TCGA-AA-3662-01 X 110494328 110494328 C A CAPN6 Missense_Mutation p.M325I 0.28 deleterious(0.02) benign(0) TCGA-AA-3662-01 X 110951604 110951604 C T ALG13 Missense_Mutation p.R245W 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3662-01 X 128710479 128710479 C T OCRL Missense_Mutation p.R689C 0.56 deleterious(0.02) probably_damaging(0.953) TCGA-AA-3662-01 X 140993632 140993632 C A MAGEC1 Missense_Mutation p.P148T 0.23 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-AA-3662-01 X 147024697 147024697 T C FMR1 Missense_Mutation p.L441S 0.22 deleterious(0) probably_damaging(0.994) TCGA-AA-3662-01 X 147967476 147967476 G T AFF2 Missense_Mutation p.K440N 0.22 tolerated(0.17) probably_damaging(0.998) TCGA-AA-3662-01 X 153609454 153609454 G A EMD Missense_Mutation p.R221H 0.19 deleterious(0) benign(0.003) TCGA-AA-3662-01 X 30260899 30260899 G A MAGEB4 Missense_Mutation p.R216H 0.17 deleterious(0) benign(0.222) TCGA-AA-3662-01 X 48688086 48688086 C T ERAS Missense_Mutation p.R185W 0.29 deleterious(0) benign(0.383) TCGA-AA-3662-01 X 66765271 66765271 G A AR Missense_Mutation p.G95S 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3663-01 10 100022530 100022530 C T LOXL4 Missense_Mutation p.A83T 0.45 tolerated(0.56) benign(0.05) TCGA-AA-3663-01 10 101835725 101835725 C T CPN1 Silent p.T121T 0.40 TCGA-AA-3663-01 10 102738279 102738279 G A SEMA4G Intron 0.32 TCGA-AA-3663-01 10 102762386 102762386 A G LZTS2 Missense_Mutation p.S31G 0.23 deleterious(0) benign(0.074) TCGA-AA-3663-01 10 102762593 102762593 C - LZTS2 Frame_Shift_Del p.S102Afs*41 0.09 TCGA-AA-3663-01 10 102827871 102827871 A - KAZALD1 3'Flank 0.38 TCGA-AA-3663-01 10 103372201 103372201 A - FBXW4 Frame_Shift_Del p.P292Qfs*86 0.31 TCGA-AA-3663-01 10 103769168 103769168 A C C10orf76 Missense_Mutation p.V306G 0.42 deleterious(0) probably_damaging(0.973) TCGA-AA-3663-01 10 104175781 104175781 G - PSD Frame_Shift_Del p.S251Afs*43 0.37 TCGA-AA-3663-01 10 104679763 104679763 C - CNNM2 Frame_Shift_Del p.L511* 0.23 TCGA-AA-3663-01 10 104836776 104836776 A - CNNM2 Frame_Shift_Del p.T824Pfs*14 0.22 TCGA-AA-3663-01 10 105151974 105151974 T - USMG5 Frame_Shift_Del p.T52Lfs*4 0.22 TCGA-AA-3663-01 10 105194616 105194616 C T PDCD11 Silent p.N1243N 0.32 TCGA-AA-3663-01 10 105209353 105209353 T C CALHM2 Missense_Mutation p.T116A 0.09 tolerated(0.07) possibly_damaging(0.448) TCGA-AA-3663-01 10 105765389 105765389 T C SLK Missense_Mutation p.V807A 0.40 deleterious(0) probably_damaging(0.984) TCGA-AA-3663-01 10 108371745 108371745 T G SORCS1 Missense_Mutation p.N986T 0.41 deleterious(0.04) benign(0.187) TCGA-AA-3663-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.32 TCGA-AA-3663-01 10 112544614 112544614 C A RBM20 Missense_Mutation p.S498R 0.12 tolerated(0.47) benign(0.034) TCGA-AA-3663-01 10 114710997 114710997 G C TCF7L2 Missense_Mutation p.S74T 0.19 tolerated(0.52) benign(0.003) TCGA-AA-3663-01 10 116045835 116045835 C T VWA2 Missense_Mutation p.R379W 0.40 tolerated(0.09) benign(0.021) TCGA-AA-3663-01 10 116059051 116059051 C T AFAP1L2 Missense_Mutation p.R694Q 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3663-01 10 116730191 116730192 - C TRUB1 Frame_Shift_Ins p.L199Pfs*20 0.31 TCGA-AA-3663-01 10 118435997 118435997 A G HSPA12A Missense_Mutation p.W435R 0.27 deleterious(0) probably_damaging(0.982) TCGA-AA-3663-01 10 11963125 11963125 T C UPF2 3'UTR 0.08 TCGA-AA-3663-01 10 120797824 120797826 CTC - EIF3A In_Frame_Del p.E1218del 0.30 TCGA-AA-3663-01 10 120820795 120820795 G T EIF3A Missense_Mutation p.L390I 0.18 deleterious(0.02) unknown(0) TCGA-AA-3663-01 10 120896321 120896321 T C FAM45A 3'UTR 0.33 TCGA-AA-3663-01 10 120923646 120923646 T C SFXN4 Silent p.S58S 0.39 TCGA-AA-3663-01 10 121275113 121275113 A C RGS10 Missense_Mutation p.S103A 0.30 tolerated(0.51) benign(0.209) TCGA-AA-3663-01 10 121341501 121341502 - A TIAL1 Frame_Shift_Ins p.G119Wfs*21 0.25 TCGA-AA-3663-01 10 123310820 123310820 C T FGFR2 Missense_Mutation p.R203H 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3663-01 10 123844196 123844196 T C TACC2 Silent p.P727P 0.35 TCGA-AA-3663-01 10 123845940 123845940 G A TACC2 Missense_Mutation p.A1309T 0.35 benign(0.218) TCGA-AA-3663-01 10 123976144 123976144 C - TACC2 Frame_Shift_Del p.T2451Pfs*11 0.33 TCGA-AA-3663-01 10 124266390 124266390 G A HTRA1 Missense_Mutation p.A321T 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3663-01 10 124746461 124746461 C T PSTK Missense_Mutation p.T287I 0.34 deleterious(0.03) benign(0.443) TCGA-AA-3663-01 10 128147775 128147775 T G C10orf90 Missense_Mutation p.E577D 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3663-01 10 129207384 129207384 C T DOCK1 Silent p.A1381A 0.32 TCGA-AA-3663-01 10 129245728 129245728 C T DOCK1 Silent p.S1807S 0.11 TCGA-AA-3663-01 10 129535857 129535857 A G FOXI2 Missense_Mutation p.Y107C 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 10 129536811 129536811 C T FOXI2 Missense_Mutation p.P180L 0.32 deleterious(0) probably_damaging(0.992) TCGA-AA-3663-01 10 129875935 129875935 G A PTPRE Missense_Mutation p.G594S 0.37 tolerated(0.1) possibly_damaging(0.844) TCGA-AA-3663-01 10 129913842 129913842 G A MKI67 Missense_Mutation p.A277V 0.08 deleterious(0.02) possibly_damaging(0.63) TCGA-AA-3663-01 10 134038796 134038796 A G STK32C Missense_Mutation p.S273P 0.32 deleterious(0) probably_damaging(0.936) TCGA-AA-3663-01 10 134261266 134261266 T C C10orf91 Missense_Mutation p.Y47H 0.12 tolerated_low_confidence(1) benign(0) TCGA-AA-3663-01 10 134680891 134680891 G A TTC40 Silent p.D1577D 0.40 TCGA-AA-3663-01 10 134686238 134686238 C - TTC40 Frame_Shift_Del p.V1485Cfs*2 0.23 TCGA-AA-3663-01 10 135076547 135076547 C T ADAM8 3'UTR 0.40 TCGA-AA-3663-01 10 135180437 135180437 A G ECHS1 Missense_Mutation p.V192A 0.31 deleterious(0.04) probably_damaging(0.925) TCGA-AA-3663-01 10 15145585 15145587 AGG - RPP38 In_Frame_Del p.E92del 0.41 TCGA-AA-3663-01 10 17089541 17089541 A G CUBN Silent p.N1067N 0.37 TCGA-AA-3663-01 10 17113484 17113484 G T CUBN Missense_Mutation p.L856I 0.10 deleterious(0.05) probably_damaging(0.955) TCGA-AA-3663-01 10 17369027 17369027 G A ST8SIA6 Silent p.S207S 0.38 TCGA-AA-3663-01 10 21806896 21806896 C T SKIDA1 5'UTR 0.44 TCGA-AA-3663-01 10 21807520 21807520 T - SKIDA1 5'UTR 0.27 TCGA-AA-3663-01 10 22171214 22171214 T - DNAJC1 Frame_Shift_Del p.K325Nfs*14 0.28 TCGA-AA-3663-01 10 23319606 23319606 A G ARMC3 Silent p.G709G 0.07 TCGA-AA-3663-01 10 23482685 23482686 CT - PTF1A Frame_Shift_Del p.S282Mfs*3 0.39 TCGA-AA-3663-01 10 23730996 23730996 T - OTUD1 3'UTR 0.30 TCGA-AA-3663-01 10 24834739 24834739 G A KIAA1217 Intron 0.40 TCGA-AA-3663-01 10 25140330 25140330 A G PRTFDC1 Missense_Mutation p.F206S 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 10 25701263 25701263 G A GPR158 Missense_Mutation p.C399Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 10 26482185 26482185 G A MYO3A Missense_Mutation p.R1497Q 0.36 tolerated_low_confidence(0.79) benign(0.026) TCGA-AA-3663-01 10 26802582 26802583 - C APBB1IP Frame_Shift_Ins p.Q271Pfs*7 0.07 TCGA-AA-3663-01 10 27389050 27389050 C A ANKRD26 Missense_Mutation p.R69M 0.08 deleterious(0.03) possibly_damaging(0.77) TCGA-AA-3663-01 10 30315995 30315995 T C KIAA1462 Missense_Mutation p.R1028G 0.30 tolerated(0.14) benign(0.02) TCGA-AA-3663-01 10 38344456 38344456 T C ZNF33A Silent p.P468P 0.34 TCGA-AA-3663-01 10 43608300 43608300 G T RET Splice_Site p.X550_splice 0.08 TCGA-AA-3663-01 10 46222942 46222942 G A FAM21C Silent p.E27E 0.25 TCGA-AA-3663-01 10 46245592 46245593 - T FAM21C Frame_Shift_Ins p.A263Cfs*2 0.28 TCGA-AA-3663-01 10 48388186 48388186 C A RBP3 Missense_Mutation p.A898S 0.29 tolerated(0.65) possibly_damaging(0.694) TCGA-AA-3663-01 10 48413601 48413601 C T GDF2 Missense_Mutation p.V423M 0.36 deleterious(0.02) probably_damaging(0.988) TCGA-AA-3663-01 10 49609692 49609692 T C MAPK8 5'UTR 0.34 TCGA-AA-3663-01 10 49654315 49654316 TC - ARHGAP22 3'Flank 0.40 TCGA-AA-3663-01 10 49812876 49812876 G A ARHGAP22 5'UTR 0.30 TCGA-AA-3663-01 10 50530813 50530813 A G C10orf71 Missense_Mutation p.T75A 0.14 tolerated(0.83) benign(0.084) TCGA-AA-3663-01 10 50827941 50827941 G A CHAT Silent p.R186R 0.09 TCGA-AA-3663-01 10 51893219 51893219 C - FAM21A 3'Flank 0.20 TCGA-AA-3663-01 10 5496478 5496478 A G NET1 Missense_Mutation p.E340G 0.31 deleterious(0.04) possibly_damaging(0.873) TCGA-AA-3663-01 10 5978510 5978510 T C FBXO18 Missense_Mutation p.V1025A 0.44 tolerated(0.77) benign(0.002) TCGA-AA-3663-01 10 5979158 5979158 C - FBXO18 Frame_Shift_Del p.P1068Rfs*46 0.24 TCGA-AA-3663-01 10 60556127 60556127 A G BICC1 Missense_Mutation p.N403D 0.29 deleterious(0.01) benign(0.345) TCGA-AA-3663-01 10 60558288 60558288 C T BICC1 Missense_Mutation p.A499V 0.38 tolerated(0.15) benign(0.058) TCGA-AA-3663-01 10 61029684 61029684 G T FAM13C Missense_Mutation p.P260T 0.07 deleterious(0.02) probably_damaging(1) TCGA-AA-3663-01 10 61829817 61829817 T - ANK3 Frame_Shift_Del p.M3608Cfs*4 0.28 TCGA-AA-3663-01 10 62631337 62631337 C T RHOBTB1 Missense_Mutation p.R665H 0.42 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 10 62648249 62648249 G A RHOBTB1 Missense_Mutation p.R393W 0.09 deleterious(0.01) possibly_damaging(0.888) TCGA-AA-3663-01 10 64973570 64973570 G T JMJD1C Missense_Mutation p.P786Q 0.05 deleterious(0) possibly_damaging(0.824) TCGA-AA-3663-01 10 70153798 70153798 A C RUFY2 Intron 0.39 TCGA-AA-3663-01 10 70673842 70673842 T - DDX50 Frame_Shift_Del p.S326Lfs*16 0.28 TCGA-AA-3663-01 10 70729975 70729975 C A DDX21 Missense_Mutation p.H419N 0.20 tolerated(0.12) benign(0.032) TCGA-AA-3663-01 10 70775815 70775815 A - KIAA1279 Frame_Shift_Del p.I506* 0.45 TCGA-AA-3663-01 10 71048489 71048489 C T HK1 5'Flank 0.23 TCGA-AA-3663-01 10 7239528 7239528 G A SFMBT2 Silent p.C560C 0.10 TCGA-AA-3663-01 10 73511467 73511467 G - C10orf54 Frame_Shift_Del p.L286Cfs*51 0.36 TCGA-AA-3663-01 10 75139667 75139667 C T ANXA7 Missense_Mutation p.G401R 0.28 deleterious(0.02) possibly_damaging(0.755) TCGA-AA-3663-01 10 75296105 75296105 G T USP54 Missense_Mutation p.P356T 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3663-01 10 75607090 75607090 A G CAMK2G Missense_Mutation p.W238R 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3663-01 10 77158517 77158517 C A ZNF503 Missense_Mutation p.G644V 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 10 7769026 7769026 A - ITIH2 Frame_Shift_Del p.T368Hfs*32 0.24 TCGA-AA-3663-01 10 78673840 78673840 C T KCNMA1 Intron 0.41 TCGA-AA-3663-01 10 80976011 80976011 A G ZMIZ1 Missense_Mutation p.K87R 0.21 possibly_damaging(0.626) TCGA-AA-3663-01 10 81066067 81066067 A C ZMIZ1 Silent p.P878P 0.29 TCGA-AA-3663-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.46 TCGA-AA-3663-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.23 TCGA-AA-3663-01 10 90591672 90591672 T G ANKRD22 Missense_Mutation p.I45L 0.08 deleterious(0.04) possibly_damaging(0.823) TCGA-AA-3663-01 10 90674328 90674330 AGA - STAMBPL1 In_Frame_Del p.E273del 0.30 TCGA-AA-3663-01 10 94243045 94243045 A - IDE Frame_Shift_Del p.L569Cfs*45 0.41 TCGA-AA-3663-01 10 94836367 94836367 A C CYP26A1 Missense_Mutation p.I356L 0.11 tolerated(1) benign(0.015) TCGA-AA-3663-01 10 95262965 95262965 C A CEP55 Silent p.A93A 0.16 TCGA-AA-3663-01 10 95372506 95372506 C T PDE6C Silent p.A8A 0.09 TCGA-AA-3663-01 10 95791557 95791557 C A PLCE1 Missense_Mutation p.Q252K 0.41 tolerated_low_confidence(0.75) benign(0.001) TCGA-AA-3663-01 10 96028737 96028737 G A PLCE1 Missense_Mutation p.D1445N 0.38 tolerated(0.08) probably_damaging(0.999) TCGA-AA-3663-01 10 97453430 97453430 G - TCTN3 Frame_Shift_Del p.P76Lfs*19 0.28 TCGA-AA-3663-01 10 97791701 97791701 A G CC2D2B Missense_Mutation p.H381R 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 10 98180805 98180805 A G TLL2 Silent p.N277N 0.32 TCGA-AA-3663-01 11 100820664 100820664 C T ARHGAP42 Missense_Mutation p.A380V 0.08 tolerated(0.16) benign(0.069) TCGA-AA-3663-01 11 101323634 101323634 A G TRPC6 3'UTR 0.07 TCGA-AA-3663-01 11 101762241 101762241 A G ANGPTL5 Silent p.P312P 0.37 TCGA-AA-3663-01 11 1017837 1017837 G T MUC6 Missense_Mutation p.P1655Q 0.05 unknown(0) TCGA-AA-3663-01 11 102056845 102056845 G T YAP1 Missense_Mutation p.R262M 0.28 deleterious(0) probably_damaging(0.976) TCGA-AA-3663-01 11 102398671 102398671 T - MMP7 Frame_Shift_Del p.N51Mfs*5 0.10 TCGA-AA-3663-01 11 104776330 104776330 T - RP11-693N9.2 Intron 0.22 TCGA-AA-3663-01 11 104901975 104901975 G A CASP1 Missense_Mutation p.P124S 0.39 tolerated(0.56) benign(0.001) TCGA-AA-3663-01 11 104912428 104912428 T C CARD16 Missense_Mutation p.D98G 0.07 tolerated(0.07) possibly_damaging(0.655) TCGA-AA-3663-01 11 105481606 105481606 T C GRIA4 Intron 0.26 TCGA-AA-3663-01 11 105481750 105481750 T C GRIA4 Missense_Mutation p.V9A 0.07 tolerated_low_confidence(0.22) benign(0.001) TCGA-AA-3663-01 11 105925136 105925136 T C KBTBD3 Missense_Mutation p.T94A 0.14 tolerated(0.1) possibly_damaging(0.469) TCGA-AA-3663-01 11 106558208 106558209 - C GUCY1A2 3'UTR 0.11 TCGA-AA-3663-01 11 107663459 107663459 G - SLC35F2 Frame_Shift_Del p.P336Lfs*25 0.29 TCGA-AA-3663-01 11 10800330 10800330 G A CTR9 Missense_Mutation p.G1067D 0.34 tolerated(0.26) probably_damaging(0.931) TCGA-AA-3663-01 11 10800341 10800341 G A CTR9 Missense_Mutation p.G1071S 0.35 tolerated(0.23) possibly_damaging(0.862) TCGA-AA-3663-01 11 108032695 108032696 - T NPAT Frame_Shift_Ins p.S1040Ifs*18 0.31 TCGA-AA-3663-01 11 108098609 108098609 T - ATM Frame_Shift_Del p.F61Lfs*15 0.27 TCGA-AA-3663-01 11 109296140 109296140 A - C11orf87 3'UTR 0.33 TCGA-AA-3663-01 11 110451409 110451409 T - ARHGAP20 Frame_Shift_Del p.K754Rfs*8 0.27 TCGA-AA-3663-01 11 110461382 110461382 G T ARHGAP20 Missense_Mutation p.S432Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 11 111953496 111953496 A G C11orf57 Missense_Mutation p.T228A 0.29 tolerated_low_confidence(0.57) benign(0.006) TCGA-AA-3663-01 11 112025711 112025711 C T IL18 Silent p.T22T 0.32 TCGA-AA-3663-01 11 113075025 113075025 G T NCAM1 Missense_Mutation p.D108Y 0.38 tolerated(0.17) benign(0.001) TCGA-AA-3663-01 11 113085203 113085203 T G NCAM1 Silent p.T402T 0.09 TCGA-AA-3663-01 11 113661825 113661825 C A ATF4P4 RNA 0.40 TCGA-AA-3663-01 11 113802109 113802109 G A HTR3B Missense_Mutation p.A73T 0.38 tolerated(0.49) benign(0.04) TCGA-AA-3663-01 11 114183107 114183107 T G NNMT Missense_Mutation p.F235V 0.33 tolerated(0.27) benign(0.157) TCGA-AA-3663-01 11 114441989 114441989 C A NXPE4 Missense_Mutation p.G436C 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 11 117064573 117064573 G A SIDT2 Missense_Mutation p.R739Q 0.42 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3663-01 11 118047235 118047235 A - SCN2B 5'UTR 0.33 TCGA-AA-3663-01 11 118133350 118133350 T C MPZL2 Missense_Mutation p.H80R 0.31 tolerated(0.21) possibly_damaging(0.561) TCGA-AA-3663-01 11 118502878 118502878 C T PHLDB1 Silent p.A748A 0.07 TCGA-AA-3663-01 11 118530584 118530584 C A TREH Missense_Mutation p.A398S 0.44 tolerated(0.09) benign(0.121) TCGA-AA-3663-01 11 118769668 118769668 G A BCL9L Missense_Mutation p.T1319M 0.39 probably_damaging(0.991) TCGA-AA-3663-01 11 118770036 118770036 C - BCL9L Frame_Shift_Del p.P1198Lfs*5 0.29 TCGA-AA-3663-01 11 118773010 118773010 C - BCL9L Frame_Shift_Del p.G481Afs*21 0.30 TCGA-AA-3663-01 11 119027100 119027100 G T ABCG4 Missense_Mutation p.G250C 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 11 119066168 119066168 C A CCDC153 Missense_Mutation p.K10N 0.42 tolerated(0.17) benign(0.076) TCGA-AA-3663-01 11 119243463 119243463 T C USP2 Missense_Mutation p.Q243R 0.42 tolerated(0.51) benign(0.001) TCGA-AA-3663-01 11 119547836 119547836 G - PVRL1 Frame_Shift_Del p.P276Qfs*10 0.26 TCGA-AA-3663-01 11 121023639 121023639 C T TECTA Silent p.C1385C 0.38 TCGA-AA-3663-01 11 121367605 121367605 T C SORL1 Silent p.N262N 0.39 TCGA-AA-3663-01 11 12262636 12262636 G A MICAL2 Missense_Mutation p.G755D 0.42 tolerated(0.8) benign(0) TCGA-AA-3663-01 11 123908846 123908846 G A OR10G7 Missense_Mutation p.T288I 0.37 deleterious(0.01) benign(0.167) TCGA-AA-3663-01 11 124135144 124135144 T - OR8G5 Frame_Shift_Del p.F142Lfs*38 0.09 TCGA-AA-3663-01 11 124738721 124738721 G A ROBO3 Missense_Mutation p.A62T 0.16 tolerated(0.37) benign(0.41) TCGA-AA-3663-01 11 124767660 124767660 C - ROBO4 Frame_Shift_Del p.G11Afs*25 0.10 TCGA-AA-3663-01 11 126306798 126306798 T C KIRREL3 Missense_Mutation p.N487S 0.31 tolerated(0.08) benign(0) TCGA-AA-3663-01 11 1272603 1272603 C A MUC5B Silent p.A4831A 0.41 TCGA-AA-3663-01 11 1278847 1278847 G A MUC5B Missense_Mutation p.A5453T 0.28 unknown(0) TCGA-AA-3663-01 11 12903467 12903467 C A TEAD1 Silent p.A179A 0.12 TCGA-AA-3663-01 11 129802035 129802035 T C PRDM10 Missense_Mutation p.T417A 0.09 tolerated(0.55) benign(0.001) TCGA-AA-3663-01 11 129827744 129827744 C T PRDM10 Missense_Mutation p.R44H 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-3663-01 11 130278728 130278728 G - ADAMTS8 Frame_Shift_Del p.R620Gfs*23 0.24 TCGA-AA-3663-01 11 130748222 130748222 G A SNX19 3'UTR 0.33 TCGA-AA-3663-01 11 130784624 130784624 G A SNX19 Missense_Mutation p.A404V 0.24 tolerated(0.49) benign(0.005) TCGA-AA-3663-01 11 132177585 132177585 G A NTM Missense_Mutation p.V177I 0.46 tolerated(0.21) benign(0.022) TCGA-AA-3663-01 11 133791045 133791045 C T IGSF9B Missense_Mutation p.V859M 0.36 deleterious(0.01) possibly_damaging(0.759) TCGA-AA-3663-01 11 13441072 13441072 C A BTBD10 Silent p.V173V 0.10 TCGA-AA-3663-01 11 14490387 14490387 T C COPB1 Missense_Mutation p.N662S 0.39 tolerated(0.63) benign(0.001) TCGA-AA-3663-01 11 14665938 14665938 C A PDE3B Missense_Mutation p.A106D 0.46 deleterious(0.02) benign(0.004) TCGA-AA-3663-01 11 1585195 1585195 C T DUSP8 Missense_Mutation p.V86M 0.35 deleterious(0) probably_damaging(0.946) TCGA-AA-3663-01 11 16068078 16068078 G A SOX6 Silent p.N535N 0.08 TCGA-AA-3663-01 11 18159461 18159461 C A MRGPRX3 Missense_Mutation p.L238M 0.15 deleterious(0) probably_damaging(0.943) TCGA-AA-3663-01 11 18793495 18793495 T A PTPN5 Missense_Mutation p.E4V 0.28 deleterious_low_confidence(0) benign(0.104) TCGA-AA-3663-01 11 19970370 19970370 G T NAV2 Missense_Mutation p.A820S 0.08 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 11 20129269 20129269 G A NAV2 Missense_Mutation p.D2360N 0.36 deleterious(0) probably_damaging(0.993) TCGA-AA-3663-01 11 20939781 20939781 G C NELL1 Missense_Mutation p.Q219H 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 11 2156611 2156611 C T IGF2 Missense_Mutation p.R104H 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 11 2186990 2186990 A G TH Missense_Mutation p.Y401H 0.17 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 11 22249051 22249051 A G ANO5 Silent p.A189A 0.42 TCGA-AA-3663-01 11 24936023 24936024 - A LUZP2 Frame_Shift_Ins p.I157Nfs*18 0.29 TCGA-AA-3663-01 11 27016434 27016434 C T FIBIN Missense_Mutation p.R121W 0.30 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-AA-3663-01 11 27114903 27114903 A G BBOX1 Missense_Mutation p.T175A 0.39 deleterious(0) probably_damaging(0.957) TCGA-AA-3663-01 11 27520952 27520952 T C LIN7C Missense_Mutation p.H131R 0.34 deleterious(0.03) benign(0.079) TCGA-AA-3663-01 11 27743067 27743067 C T RP11-587D21.4 Intron 0.42 TCGA-AA-3663-01 11 28045345 28045345 G A KIF18A Missense_Mutation p.R853C 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 11 30921161 30921161 T C DCDC1 Missense_Mutation p.T638A 0.11 tolerated(0.35) benign(0.001) TCGA-AA-3663-01 11 33163117 33163117 C T CSTF3 Intron 0.26 TCGA-AA-3663-01 11 33628318 33628318 C - KIAA1549L Frame_Shift_Del p.T1376Pfs*16 0.26 TCGA-AA-3663-01 11 33640126 33640126 G A KIAA1549L Missense_Mutation p.S1479N 0.29 tolerated(0.39) probably_damaging(1) TCGA-AA-3663-01 11 3381545 3381545 T C ZNF195 Silent p.L231L 0.39 TCGA-AA-3663-01 11 34144048 34144048 A C NAT10 Missense_Mutation p.T275P 0.33 deleterious(0) possibly_damaging(0.866) TCGA-AA-3663-01 11 34910306 34910306 T C APIP Silent p.T106T 0.36 TCGA-AA-3663-01 11 35282348 35282348 T - SLC1A2 3'UTR 0.27 TCGA-AA-3663-01 11 35456178 35456178 G A PAMR1 Missense_Mutation p.A520V 0.08 deleterious(0.01) possibly_damaging(0.836) TCGA-AA-3663-01 11 36615111 36615111 C T RAG2 Missense_Mutation p.G203E 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 11 40136310 40136310 A G LRRC4C Silent p.D511D 0.39 TCGA-AA-3663-01 11 47364190 47364190 G A MYBPC3 Silent p.D521D 0.36 TCGA-AA-3663-01 11 47369448 47369448 C A MYBPC3 Missense_Mutation p.G261C 0.37 deleterious(0.01) possibly_damaging(0.795) TCGA-AA-3663-01 11 47431812 47431812 G - SLC39A13 Frame_Shift_Del p.A58Lfs*3 0.32 TCGA-AA-3663-01 11 47431836 47431836 G A SLC39A13 Missense_Mutation p.R64Q 0.40 tolerated(0.05) benign(0.038) TCGA-AA-3663-01 11 47599139 47599139 A - KBTBD4 Frame_Shift_Del p.L154Wfs*13 0.09 TCGA-AA-3663-01 11 48142625 48142625 T C PTPRJ Silent p.S141S 0.34 TCGA-AA-3663-01 11 48266701 48266701 C T OR4X2 Nonsense_Mutation p.Q16* 0.39 TCGA-AA-3663-01 11 48510803 48510803 C G OR4A47 Missense_Mutation p.H153Q 0.41 deleterious_low_confidence(0.01) benign(0.367) TCGA-AA-3663-01 11 48510865 48510866 - T OR4A47 Frame_Shift_Ins p.C177Lfs*2 0.31 TCGA-AA-3663-01 11 4944642 4944642 G A OR51G1 Nonsense_Mutation p.Q310* 0.42 TCGA-AA-3663-01 11 4945253 4945253 A G OR51G1 Missense_Mutation p.I106T 0.48 deleterious(0) probably_damaging(0.96) TCGA-AA-3663-01 11 49831748 49831748 C A RP11-707M1.1 RNA 0.40 TCGA-AA-3663-01 11 5322811 5322811 G T OR51B4 Silent p.A122A 0.35 TCGA-AA-3663-01 11 5345040 5345041 - A OR51B2 Frame_Shift_Ins p.S163Ffs*27 0.31 TCGA-AA-3663-01 11 5443853 5443853 A G OR51Q1 Silent p.E141E 0.34 TCGA-AA-3663-01 11 5475514 5475514 A G OR51I2 Missense_Mutation p.K266E 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-AA-3663-01 11 55595196 55595196 T G OR5L2 Missense_Mutation p.F168V 0.39 deleterious(0.01) benign(0.011) TCGA-AA-3663-01 11 56058232 56058232 A C OR8H1 Missense_Mutation p.F103V 0.07 deleterious(0) possibly_damaging(0.858) TCGA-AA-3663-01 11 56431467 56431467 T - OR5AR1 Frame_Shift_Del p.F104Lfs*2 0.09 TCGA-AA-3663-01 11 57097894 57097894 G A SSRP1 Missense_Mutation p.P436S 0.37 tolerated(0.83) benign(0.005) TCGA-AA-3663-01 11 57146154 57146154 C G PRG3 Missense_Mutation p.W169C 0.32 deleterious(0.02) benign(0.347) TCGA-AA-3663-01 11 57193679 57193679 T A SLC43A3 5'UTR 0.43 TCGA-AA-3663-01 11 57559054 57559054 G A CTNND1 Missense_Mutation p.R35H 0.36 deleterious(0) probably_damaging(0.98) TCGA-AA-3663-01 11 57798597 57798597 G A OR6Q1 Missense_Mutation p.R58Q 0.29 tolerated(0.27) benign(0) TCGA-AA-3663-01 11 58482871 58482871 T - GLYAT Frame_Shift_Del p.N36Tfs*8 0.27 TCGA-AA-3663-01 11 58962827 58962827 C - DTX4 Frame_Shift_Del p.G510Afs*35 0.49 TCGA-AA-3663-01 11 59629143 59629143 C T TCN1 Missense_Mutation p.G138D 0.39 tolerated(0.14) benign(0.134) TCGA-AA-3663-01 11 60102395 60102395 G T MS4A6E Missense_Mutation p.E9D 0.08 tolerated(0.26) probably_damaging(0.952) TCGA-AA-3663-01 11 60643042 60643042 A C ZP1 Silent p.P610P 0.23 TCGA-AA-3663-01 11 60705396 60705396 G T SLC15A3 Missense_Mutation p.L513I 0.44 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3663-01 11 61557264 61557264 T C TMEM258 3'UTR 0.11 TCGA-AA-3663-01 11 61724926 61724926 T C BEST1 Missense_Mutation p.V175A 0.36 deleterious(0.01) probably_damaging(1) TCGA-AA-3663-01 11 62296227 62296228 - G AHNAK Frame_Shift_Ins p.S1888Qfs*8 0.10 TCGA-AA-3663-01 11 62496479 62496479 A G TTC9C Silent p.G53G 0.35 TCGA-AA-3663-01 11 62563805 62563805 G T NXF1 Silent p.A433A 0.09 TCGA-AA-3663-01 11 62594833 62594833 G A STX5 Silent p.L112L 0.35 TCGA-AA-3663-01 11 6292495 6292495 C T CCKBR Missense_Mutation p.R356C 0.30 deleterious(0) benign(0.077) TCGA-AA-3663-01 11 63312104 63312104 G - RARRES3 Frame_Shift_Del p.A45Lfs*10 0.12 TCGA-AA-3663-01 11 63683069 63683069 C T RCOR2 Missense_Mutation p.V48I 0.38 tolerated(0.05) probably_damaging(0.981) TCGA-AA-3663-01 11 63884566 63884566 A G FLRT1 Missense_Mutation p.Y276C 0.35 tolerated(0.16) benign(0.033) TCGA-AA-3663-01 11 63884697 63884697 C A FLRT1 Missense_Mutation p.L320M 0.31 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 11 63988106 63988107 - C FERMT3 Frame_Shift_Ins p.R510Pfs*105 0.23 TCGA-AA-3663-01 11 64024130 64024130 C T PLCB3 Silent p.G302G 0.29 TCGA-AA-3663-01 11 64084187 64084187 A - TRMT112 3'UTR 0.40 TCGA-AA-3663-01 11 64111034 64111034 T C CCDC88B Missense_Mutation p.L422P 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 11 64494774 64494774 T A RASGRP2 Nonstop_Mutation p.*610Yext*1 0.34 TCGA-AA-3663-01 11 64698905 64698905 C T PPP2R5B Intron 0.38 TCGA-AA-3663-01 11 64815820 64815820 G A NAALADL1 Silent p.S412S 0.07 TCGA-AA-3663-01 11 64880874 64880874 G - TM7SF2 Frame_Shift_Del p.N165Tfs*45 0.32 TCGA-AA-3663-01 11 6499103 6499103 G A ARFIP2 Nonsense_Mutation p.R239* 0.44 TCGA-AA-3663-01 11 65124788 65124788 G T TIGD3 3'UTR 0.10 TCGA-AA-3663-01 11 65307826 65307826 T C LTBP3 Missense_Mutation p.N1045S 0.25 tolerated(0.87) possibly_damaging(0.491) TCGA-AA-3663-01 11 65339060 65339060 G A SSSCA1 Missense_Mutation p.C152Y 0.28 tolerated(0.91) benign(0) TCGA-AA-3663-01 11 65380572 65380572 G A MAP3K11 Missense_Mutation p.A219V 0.11 deleterious(0) benign(0.438) TCGA-AA-3663-01 11 65480428 65480428 C T KAT5 Missense_Mutation p.R95W 0.06 deleterious(0.04) benign(0.201) TCGA-AA-3663-01 11 6568765 6568765 G A DNHD1 Missense_Mutation p.S2199N 0.14 benign(0.012) TCGA-AA-3663-01 11 65779734 65779734 C T CST6 Silent p.H73H 0.41 TCGA-AA-3663-01 11 66055550 66055550 A G YIF1A Splice_Site p.X81_splice 0.21 TCGA-AA-3663-01 11 66082723 66082723 C T CD248 Silent p.L592L 0.45 TCGA-AA-3663-01 11 6632238 6632238 C T TAF10 Missense_Mutation p.R191H 0.34 deleterious(0.04) benign(0.286) TCGA-AA-3663-01 11 66330368 66330368 C T CTSF 3'Flank 0.28 TCGA-AA-3663-01 11 66359924 66359924 G A CCDC87 Missense_Mutation p.A188V 0.37 tolerated(0.22) benign(0.005) TCGA-AA-3663-01 11 66461729 66461729 T C SPTBN2 Missense_Mutation p.T1462A 0.37 tolerated(0.4) benign(0.082) TCGA-AA-3663-01 11 66469100 66469100 G - SPTBN2 Frame_Shift_Del p.P924Qfs*35 0.29 TCGA-AA-3663-01 11 67939038 67939038 C T SUV420H1 Nonsense_Mutation p.W264* 0.43 TCGA-AA-3663-01 11 68458423 68458423 G A GAL Missense_Mutation p.A114T 0.14 tolerated(0.22) benign(0.223) TCGA-AA-3663-01 11 6912825 6912825 C A OR2D2 Missense_Mutation p.A303S 0.46 tolerated(0.42) benign(0.004) TCGA-AA-3663-01 11 70224138 70224138 T C PPFIA1 Silent p.D1129D 0.34 TCGA-AA-3663-01 11 70858192 70858192 C T SHANK2 Missense_Mutation p.V61M 0.09 deleterious(0) probably_damaging(0.948) TCGA-AA-3663-01 11 72423599 72423599 C T ARAP1 Silent p.P254P 0.37 TCGA-AA-3663-01 11 72553900 72553901 - A FCHSD2 Intron 0.22 TCGA-AA-3663-01 11 73387253 73387253 A C RAB6A 3'UTR 0.40 TCGA-AA-3663-01 11 73387289 73387289 T C RAB6A 3'UTR 0.42 TCGA-AA-3663-01 11 74992129 74992131 TCT - ARRB1 In_Frame_Del p.K157del 0.34 TCGA-AA-3663-01 11 7614421 7614421 G A PPFIBP2 Missense_Mutation p.R113H 0.36 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 11 76224491 76224491 A G C11orf30 Silent p.A475A 0.30 TCGA-AA-3663-01 11 76831813 76831813 T A CAPN5 Missense_Mutation p.S449T 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-AA-3663-01 11 77612510 77612510 C T INTS4 Missense_Mutation p.A729T 0.31 deleterious(0.01) possibly_damaging(0.821) TCGA-AA-3663-01 11 77920768 77920768 G A USP35 Missense_Mutation p.A623T 0.30 tolerated(0.16) unknown(0) TCGA-AA-3663-01 11 78381503 78381503 G A TENM4 Missense_Mutation p.R1963W 0.08 deleterious(0) probably_damaging(0.994) TCGA-AA-3663-01 11 7846961 7846961 G T OR5P3 Missense_Mutation p.L187I 0.07 deleterious(0.05) possibly_damaging(0.533) TCGA-AA-3663-01 11 794885 794885 T C SLC25A22 Missense_Mutation p.I13V 0.09 tolerated(0.09) benign(0.3) TCGA-AA-3663-01 11 7960979 7960979 A C OR10A3 Missense_Mutation p.V30G 0.28 tolerated(0.06) benign(0.082) TCGA-AA-3663-01 11 801249 801249 G A PIDD Silent p.T533T 0.35 TCGA-AA-3663-01 11 8111728 8111728 C - TUB Frame_Shift_Del p.L125Wfs*85 0.25 TCGA-AA-3663-01 11 84245625 84245625 A C DLG2 Missense_Mutation p.I169M 0.06 deleterious(0) possibly_damaging(0.483) TCGA-AA-3663-01 11 85373379 85373380 - A CREBZF 3'UTR 0.25 TCGA-AA-3663-01 11 85375640 85375640 C - CREBZF Frame_Shift_Del p.E94Kfs*74 0.28 TCGA-AA-3663-01 11 85593677 85593677 A - CCDC83 Frame_Shift_Del p.K102Nfs*12 0.31 TCGA-AA-3663-01 11 85742562 85742562 C A PICALM Silent p.V74V 0.30 TCGA-AA-3663-01 11 88033775 88033775 T G CTSC Missense_Mutation p.K227T 0.08 tolerated(0.44) benign(0.114) TCGA-AA-3663-01 11 88911211 88911211 G A TYR Silent p.L30L 0.10 TCGA-AA-3663-01 11 89431638 89431638 T G FOLH1B RNA 0.10 TCGA-AA-3663-01 11 9047345 9047345 C T SCUBE2 Missense_Mutation p.A863T 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 11 9215204 9215204 G A DENND5A Missense_Mutation p.A325V 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 11 94532971 94532971 G A AMOTL1 Silent p.Q205Q 0.38 TCGA-AA-3663-01 11 9492923 9492923 C T ZNF143 Missense_Mutation p.A23V 0.33 deleterious_low_confidence(0.01) benign(0.026) TCGA-AA-3663-01 11 977193 977193 G A AP2A2 Missense_Mutation p.R191Q 0.30 deleterious(0.02) benign(0.353) TCGA-AA-3663-01 12 100729434 100729434 T A SCYL2 Missense_Mutation p.S632T 0.07 tolerated(0.43) benign(0.01) TCGA-AA-3663-01 12 100887051 100887051 T - NR1H4 5'UTR 0.45 TCGA-AA-3663-01 12 10150921 10150921 G A CLEC1B Silent p.C41C 0.10 TCGA-AA-3663-01 12 102025458 102025458 G A MYBPC1 Silent p.K108K 0.27 TCGA-AA-3663-01 12 10339143 10339143 G A TMEM52B Missense_Mutation p.V68I 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-AA-3663-01 12 105382025 105382025 A G C12orf45 Missense_Mutation p.S66G 0.24 deleterious(0) probably_damaging(0.993) TCGA-AA-3663-01 12 108029110 108029110 G A BTBD11 Missense_Mutation p.G894R 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 12 108589573 108589573 G T WSCD2 5'UTR 0.11 TCGA-AA-3663-01 12 108686472 108686472 C T CMKLR1 Missense_Mutation p.V90I 0.10 tolerated(0.68) benign(0.013) TCGA-AA-3663-01 12 109665215 109665215 A G ACACB Missense_Mutation p.S1308G 0.07 tolerated(0.11) benign(0.03) TCGA-AA-3663-01 12 109671587 109671587 G A ACACB Missense_Mutation p.V1392M 0.42 tolerated(0.26) benign(0.027) TCGA-AA-3663-01 12 109865349 109865349 C T MYO1H Missense_Mutation p.A620V 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 12 10999825 10999825 C T PRR4 Missense_Mutation p.R81H 0.09 tolerated_low_confidence(0.4) benign(0) TCGA-AA-3663-01 12 110012684 110012684 A G MVK Silent p.E19E 0.42 TCGA-AA-3663-01 12 110832966 110832966 T - ANAPC7 Frame_Shift_Del p.K150Nfs*22 0.21 TCGA-AA-3663-01 12 112130538 112130539 - C ACAD10 Frame_Shift_Ins p.R11Pfs*74 0.23 TCGA-AA-3663-01 12 112228256 112228256 A G ALDH2 Missense_Mutation p.M191V 0.41 deleterious(0) probably_damaging(0.987) TCGA-AA-3663-01 12 112451230 112451230 A G ERP29 5'UTR 0.28 TCGA-AA-3663-01 12 113716624 113716624 G A TPCN1 Silent p.A499A 0.33 TCGA-AA-3663-01 12 11546458 11546458 G - PRB2 Frame_Shift_Del p.P185Hfs*246 0.21 TCGA-AA-3663-01 12 117615412 117615412 T - FBXO21 Frame_Shift_Del p.I169Ffs*11 0.24 TCGA-AA-3663-01 12 117723945 117723945 C T NOS1 Silent p.S418S 0.11 TCGA-AA-3663-01 12 121151189 121151189 A G UNC119B Silent p.S119S 0.43 TCGA-AA-3663-01 12 121441777 121441777 T - C12orf43 3'UTR 0.48 TCGA-AA-3663-01 12 122018773 122018773 G - KDM2B Frame_Shift_Del p.P15Hfs*92 0.32 TCGA-AA-3663-01 12 122369731 122369731 A G WDR66 Missense_Mutation p.Y276C 0.39 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 12 123341748 123341748 C T HIP1R Missense_Mutation p.R601W 0.49 deleterious(0.02) possibly_damaging(0.582) TCGA-AA-3663-01 12 123746304 123746304 C T CDK2AP1 Silent p.T109T 0.32 TCGA-AA-3663-01 12 124191283 124191283 G A TCTN2 Missense_Mutation p.V594M 0.25 deleterious(0) possibly_damaging(0.873) TCGA-AA-3663-01 12 124191387 124191387 C - TCTN2 Frame_Shift_Del p.L630* 0.21 TCGA-AA-3663-01 12 124298175 124298175 T C DNAH10 Silent p.H1085H 0.31 TCGA-AA-3663-01 12 124904537 124904537 A G NCOR2 Missense_Mutation p.V483A 0.09 unknown(0) TCGA-AA-3663-01 12 125558513 125558513 T C AACS Silent p.R75R 0.15 TCGA-AA-3663-01 12 126138910 126138910 C A TMEM132B Missense_Mutation p.P964Q 0.36 tolerated(0.48) possibly_damaging(0.785) TCGA-AA-3663-01 12 12629770 12629770 G T DUSP16 Silent p.S665S 0.46 TCGA-AA-3663-01 12 12630872 12630872 A G DUSP16 Missense_Mutation p.I298T 0.42 deleterious(0) possibly_damaging(0.623) TCGA-AA-3663-01 12 128899655 128899655 G A TMEM132C Missense_Mutation p.G155D 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 12 129190183 129190183 T C TMEM132C Silent p.I890I 0.49 TCGA-AA-3663-01 12 13061496 13061496 T G GPRC5A Missense_Mutation p.F105V 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 12 132510215 132510215 C - EP400 Frame_Shift_Del p.Q1630Sfs*11 0.29 TCGA-AA-3663-01 12 133398653 133398653 G A GOLGA3 Missense_Mutation p.S21L 0.30 tolerated_low_confidence(0.14) benign(0.006) TCGA-AA-3663-01 12 14656655 14656655 T C PLBD1 3'UTR 0.34 TCGA-AA-3663-01 12 2027494 2027494 T C CACNA2D4 Missense_Mutation p.K49R 0.39 tolerated_low_confidence(0.22) benign(0.126) TCGA-AA-3663-01 12 21790114 21790114 A G LDHB Missense_Mutation p.I243T 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-AA-3663-01 12 21953918 21953918 T A ABCC9 3'UTR 0.08 TCGA-AA-3663-01 12 22625682 22625684 AGG - C2CD5 In_Frame_Del p.P701del 0.68 TCGA-AA-3663-01 12 23689459 23689459 T - SOX5 Frame_Shift_Del p.K639Sfs*77 0.47 TCGA-AA-3663-01 12 24736737 24736737 A G LINC00477 RNA 0.29 TCGA-AA-3663-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.77 deleterious(0.04) possibly_damaging(0.506) TCGA-AA-3663-01 12 26640150 26640150 T - ITPR2 Frame_Shift_Del p.K1802Sfs*13 0.43 TCGA-AA-3663-01 12 27234207 27234207 G T C12orf71 Missense_Mutation p.A237D 0.35 tolerated(0.05) possibly_damaging(0.816) TCGA-AA-3663-01 12 31135997 31135997 A G TSPAN11 Splice_Site p.X206_splice 0.42 TCGA-AA-3663-01 12 31605052 31605052 A T DENND5B Nonsense_Mutation p.L484* 0.41 TCGA-AA-3663-01 12 32260323 32260323 C A BICD1 Missense_Mutation p.L20I 0.18 deleterious(0) probably_damaging(0.985) TCGA-AA-3663-01 12 32903721 32903721 A G YARS2 Silent p.P345P 0.27 TCGA-AA-3663-01 12 33592316 33592316 T A SYT10 Missense_Mutation p.S48C 0.11 tolerated(0.06) benign(0.145) TCGA-AA-3663-01 12 3659196 3659196 G T PRMT8 Missense_Mutation p.G119V 0.13 deleterious(0.02) probably_damaging(1) TCGA-AA-3663-01 12 39118667 39118667 T G CPNE8 Missense_Mutation p.K278T 0.06 deleterious(0.05) benign(0.146) TCGA-AA-3663-01 12 39733992 39733992 T C KIF21A Missense_Mutation p.D762G 0.09 deleterious(0) benign(0.304) TCGA-AA-3663-01 12 40677682 40677682 T C LRRK2 Silent p.C749C 0.27 TCGA-AA-3663-01 12 41327515 41327515 C T CNTN1 Nonsense_Mutation p.R274* 0.26 TCGA-AA-3663-01 12 44338056 44338056 G A TMEM117 Silent p.S107S 0.38 TCGA-AA-3663-01 12 4796259 4796259 G T NDUFA9 Missense_Mutation p.K373N 0.40 deleterious(0.02) benign(0.078) TCGA-AA-3663-01 12 48391456 48391456 G T COL2A1 Missense_Mutation p.P155H 0.38 unknown(0) TCGA-AA-3663-01 12 48458872 48458872 T C SENP1 Silent p.E417E 0.37 TCGA-AA-3663-01 12 49162776 49162776 T C ADCY6 Missense_Mutation p.N1109D 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3663-01 12 49176628 49176628 A G ADCY6 Missense_Mutation p.V197A 0.37 tolerated(0.1) benign(0.174) TCGA-AA-3663-01 12 49390933 49390933 C T DDN Missense_Mutation p.A576T 0.28 deleterious_low_confidence(0.05) benign(0.168) TCGA-AA-3663-01 12 49440415 49440415 G - KMT2D Frame_Shift_Del p.K1466Rfs*40 0.25 TCGA-AA-3663-01 12 49953270 49953270 C T MCRS1 Missense_Mutation p.G364D 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 12 50036367 50036367 G A PRPF40B Missense_Mutation p.R676H 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 12 50043309 50043309 T C FMNL3 Missense_Mutation p.I750V 0.37 tolerated(0.27) benign(0.057) TCGA-AA-3663-01 12 50047581 50047581 C - FMNL3 Frame_Shift_Del p.G383Vfs*11 0.29 TCGA-AA-3663-01 12 50748572 50748572 T - FAM186A Frame_Shift_Del p.K681Nfs*7 0.09 TCGA-AA-3663-01 12 50822863 50822863 T C LARP4 Silent p.Y104Y 0.42 TCGA-AA-3663-01 12 51281074 51281074 C G TMPRSS12 Nonsense_Mutation p.Y275* 0.33 TCGA-AA-3663-01 12 52700027 52700027 G A KRT86 Missense_Mutation p.A404T 0.38 deleterious(0.02) benign(0.16) TCGA-AA-3663-01 12 52761082 52761082 G A KRT85 Silent p.A36A 0.32 TCGA-AA-3663-01 12 52960916 52960916 G T KRT74 Missense_Mutation p.P476H 0.42 deleterious_low_confidence(0) benign(0.004) TCGA-AA-3663-01 12 53007489 53007489 C T KRT73 Missense_Mutation p.A323T 0.38 tolerated(0.07) benign(0.026) TCGA-AA-3663-01 12 53091464 53091464 A G KRT77 Splice_Site p.X253_splice 0.41 TCGA-AA-3663-01 12 53581356 53581356 C T ZNF740 Silent p.D188D 0.39 TCGA-AA-3663-01 12 53647478 53647478 A G MFSD5 Missense_Mutation p.S394G 0.13 tolerated(0.13) benign(0.112) TCGA-AA-3663-01 12 54769666 54769666 T C ZNF385A Missense_Mutation p.I74V 0.10 tolerated(0.08) probably_damaging(0.997) TCGA-AA-3663-01 12 54812860 54812860 G A ITGA5 Silent p.G41G 0.33 TCGA-AA-3663-01 12 55886335 55886335 T - OR6C68 Frame_Shift_Del p.L61Sfs*7 0.13 TCGA-AA-3663-01 12 56143619 56143619 T C GDF11 Missense_Mutation p.Y393H 0.35 deleterious(0.04) benign(0.243) TCGA-AA-3663-01 12 56345564 56345564 C T DGKA Silent p.G528G 0.39 TCGA-AA-3663-01 12 56516162 56516162 G A ZC3H10 3'UTR 0.10 TCGA-AA-3663-01 12 56566366 56566366 T C SMARCC2 Intron 0.10 TCGA-AA-3663-01 12 56629458 56629458 C T SLC39A5 Missense_Mutation p.L307F 0.29 deleterious(0.03) benign(0.038) TCGA-AA-3663-01 12 56646301 56646301 C A ANKRD52 Missense_Mutation p.R452M 0.22 deleterious(0.02) benign(0.085) TCGA-AA-3663-01 12 56742766 56742766 G T STAT2 Silent p.S506S 0.40 TCGA-AA-3663-01 12 56874142 56874142 C T GLS2 Missense_Mutation p.R71H 0.40 tolerated(0.09) benign(0.001) TCGA-AA-3663-01 12 57033899 57033899 T C ATP5B Silent p.V384V 0.35 TCGA-AA-3663-01 12 57398470 57398470 C T ZBTB39 Missense_Mutation p.A78T 0.43 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3663-01 12 57493656 57493656 G A STAT6 Silent p.Y546Y 0.35 TCGA-AA-3663-01 12 57532319 57532319 G T LRP1 Missense_Mutation p.G49C 0.38 probably_damaging(0.987) TCGA-AA-3663-01 12 57572747 57572747 G A LRP1 Missense_Mutation p.V1561M 0.26 benign(0.075) TCGA-AA-3663-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.42 TCGA-AA-3663-01 12 58025103 58025103 C - B4GALNT1 Frame_Shift_Del p.G88Afs*24 0.43 TCGA-AA-3663-01 12 58202179 58202179 A G AVIL Silent p.I364I 0.20 TCGA-AA-3663-01 12 6128639 6128639 G A VWF Silent p.R1315R 0.77 TCGA-AA-3663-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.28 TCGA-AA-3663-01 12 64505619 64505619 T C SRGAP1 Missense_Mutation p.V666A 0.45 tolerated(0.11) benign(0.1) TCGA-AA-3663-01 12 6486506 6486506 T C SCNN1A 5'Flank 0.41 TCGA-AA-3663-01 12 6634873 6634873 T C NCAPD2 Missense_Mutation p.M780T 0.27 deleterious(0) probably_damaging(0.98) TCGA-AA-3663-01 12 6664481 6664481 G A IFFO1 Missense_Mutation p.R239C 0.19 deleterious(0) probably_damaging(0.988) TCGA-AA-3663-01 12 66703929 66703929 T C HELB Silent p.P407P 0.36 TCGA-AA-3663-01 12 67699709 67699709 C T CAND1 Missense_Mutation p.A754V 0.43 deleterious(0.03) possibly_damaging(0.521) TCGA-AA-3663-01 12 68055785 68055785 G - DYRK2 3'UTR 0.21 TCGA-AA-3663-01 12 69083345 69083345 A G NUP107 Missense_Mutation p.T45A 0.31 tolerated_low_confidence(0.72) benign(0.002) TCGA-AA-3663-01 12 6933653 6933653 T C GPR162 Missense_Mutation p.C197R 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 12 6981298 6981298 G A SPSB2 Intron 0.14 TCGA-AA-3663-01 12 70004915 70004915 T - LRRC10 5'UTR 0.23 TCGA-AA-3663-01 12 7076771 7076771 C A PHB2 Intron 0.44 TCGA-AA-3663-01 12 71056273 71056273 A G PTPRR Splice_Site p.X536_splice 0.42 TCGA-AA-3663-01 12 72425060 72425060 G A TPH2 Missense_Mutation p.C396Y 0.30 tolerated(0.05) benign(0.226) TCGA-AA-3663-01 12 72680529 72680529 T A TRHDE Missense_Mutation p.I283N 0.40 deleterious(0.01) possibly_damaging(0.894) TCGA-AA-3663-01 12 7551138 7551138 G A CD163L1 Missense_Mutation p.P484L 0.12 tolerated(0.13) benign(0.071) TCGA-AA-3663-01 12 76442093 76442093 A - NAP1L1 3'UTR 0.33 TCGA-AA-3663-01 12 76739905 76739905 T - BBS10 Frame_Shift_Del p.K620Nfs*12 0.33 TCGA-AA-3663-01 12 77423711 77423711 C T E2F7 Missense_Mutation p.R595H 0.42 tolerated(0.24) benign(0.099) TCGA-AA-3663-01 12 77449703 77449703 G A E2F7 Missense_Mutation p.R101W 0.29 deleterious(0.03) benign(0.099) TCGA-AA-3663-01 12 81239534 81239534 T G LIN7A Missense_Mutation p.D153A 0.32 deleterious(0) probably_damaging(0.96) TCGA-AA-3663-01 12 83289922 83289922 G A TMTC2 Missense_Mutation p.G327D 0.08 tolerated(0.15) benign(0.09) TCGA-AA-3663-01 12 88444187 88444187 T - CEP290 Frame_Shift_Del p.I2385* 0.27 TCGA-AA-3663-01 12 88453675 88453675 T - CEP290 Frame_Shift_Del p.E2216Kfs*10 0.23 TCGA-AA-3663-01 12 88514774 88514774 C T CEP290 Silent p.S453S 0.41 TCGA-AA-3663-01 12 91347335 91347335 C A CCER1 Missense_Mutation p.Q395H 0.40 deleterious(0) unknown(0) TCGA-AA-3663-01 12 93149644 93149644 A T PLEKHG7 Missense_Mutation p.K178N 0.09 deleterious(0) benign(0.342) TCGA-AA-3663-01 12 9346768 9346768 C T PZP Missense_Mutation p.A387T 0.37 tolerated(0.43) benign(0.198) TCGA-AA-3663-01 12 95228685 95228685 G A MIR492 3'Flank 0.46 TCGA-AA-3663-01 12 95424602 95424602 T G NR2C1 Intron 0.43 TCGA-AA-3663-01 12 96266165 96266165 T C CCDC38 Missense_Mutation p.D451G 0.35 tolerated(1) benign(0) TCGA-AA-3663-01 12 96379891 96379891 G A HAL Missense_Mutation p.R367W 0.42 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 12 97330991 97330991 G T NEDD1 Missense_Mutation p.G320C 0.11 deleterious(0.02) benign(0.033) TCGA-AA-3663-01 12 98850166 98850166 A G SLC9A7P1 RNA 0.29 TCGA-AA-3663-01 12 98850239 98850239 G A SLC9A7P1 RNA 0.06 TCGA-AA-3663-01 12 99028158 99028158 C A IKBIP Missense_Mutation p.K71N 0.27 tolerated(0.3) benign(0.006) TCGA-AA-3663-01 13 103384339 103384339 T - CCDC168 Frame_Shift_Del p.K1607Nfs*3 0.30 TCGA-AA-3663-01 13 103385742 103385742 T A CCDC168 Nonsense_Mutation p.K1140* 0.41 TCGA-AA-3663-01 13 103388697 103388697 G A CCDC168 Missense_Mutation p.P155S 0.36 tolerated(0.08) possibly_damaging(0.803) TCGA-AA-3663-01 13 111176256 111176256 G A RAB20 Missense_Mutation p.A154V 0.40 deleterious(0.01) probably_damaging(1) TCGA-AA-3663-01 13 111811399 111811399 C A ARHGEF7 Missense_Mutation p.P93H 0.50 tolerated_low_confidence(0.17) benign(0) TCGA-AA-3663-01 13 111955381 111955381 C T ARHGEF7 Missense_Mutation p.A621V 0.32 deleterious(0.01) possibly_damaging(0.573) TCGA-AA-3663-01 13 112724631 112724631 G A SOX1 3'UTR 0.31 TCGA-AA-3663-01 13 113833315 113833315 C T PCID2 Missense_Mutation p.E413K 0.12 deleterious(0) probably_damaging(0.943) TCGA-AA-3663-01 13 115067441 115067441 G T UPF3A Nonsense_Mutation p.G415* 0.33 TCGA-AA-3663-01 13 20567933 20567933 A G ZMYM2 Missense_Mutation p.I241V 0.43 tolerated(1) benign(0) TCGA-AA-3663-01 13 20978783 20978785 CTT - CRYL1 In_Frame_Del p.K279del 0.41 TCGA-AA-3663-01 13 21006285 21006285 G A CRYL1 Missense_Mutation p.R197C 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3663-01 13 21205180 21205180 A - IFT88 Frame_Shift_Del p.K453Rfs*5 0.36 TCGA-AA-3663-01 13 21721577 21721577 A T SAP18 3'UTR 0.39 TCGA-AA-3663-01 13 23929264 23929264 A G SACS Missense_Mutation p.L496P 0.19 probably_damaging(0.999) TCGA-AA-3663-01 13 25463532 25463532 A G CENPJ Missense_Mutation p.S1075P 0.47 tolerated(0.14) benign(0.005) TCGA-AA-3663-01 13 25672306 25672306 A - PABPC3 3'UTR 0.53 TCGA-AA-3663-01 13 28897002 28897002 C T FLT1 Missense_Mutation p.V960I 0.41 tolerated(0.2) benign(0.034) TCGA-AA-3663-01 13 30854315 30854315 C T KATNAL1 Missense_Mutation p.V70I 0.37 tolerated(0.2) benign(0.005) TCGA-AA-3663-01 13 32340131 32340131 A G RXFP2 Missense_Mutation p.K155R 0.26 tolerated(0.16) benign(0.014) TCGA-AA-3663-01 13 32821471 32821471 G A FRY Nonsense_Mutation p.W2280* 0.30 TCGA-AA-3663-01 13 32910448 32910448 T C BRCA2 Silent p.S652S 0.09 TCGA-AA-3663-01 13 33016547 33016547 A - N4BP2L2 Frame_Shift_Del p.F709Lfs*25 0.27 TCGA-AA-3663-01 13 35692517 35692518 - A NBEA Frame_Shift_Ins p.N718Kfs*4 0.10 TCGA-AA-3663-01 13 37439726 37439726 A G SMAD9 Silent p.S317S 0.09 TCGA-AA-3663-01 13 39425831 39425831 A G FREM2 Missense_Mutation p.I2251V 0.39 tolerated(0.14) benign(0.091) TCGA-AA-3663-01 13 41642799 41642799 A C WBP4 Missense_Mutation p.D122A 0.21 tolerated(0.4) benign(0.045) TCGA-AA-3663-01 13 41706133 41706133 T C KBTBD6 Missense_Mutation p.N172S 0.14 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 13 41905454 41905454 C T NAA16 Nonsense_Mutation p.Q286* 0.28 TCGA-AA-3663-01 13 42044709 42044709 C T RGCC 3'UTR 0.35 TCGA-AA-3663-01 13 42860483 42860483 T G AKAP11 5'UTR 0.08 TCGA-AA-3663-01 13 42874693 42874693 C T AKAP11 Missense_Mutation p.A604V 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 13 45008838 45008838 G - TSC22D1 Frame_Shift_Del p.P1049Lfs*38 0.37 TCGA-AA-3663-01 13 49765231 49765231 A C FNDC3A Missense_Mutation p.K675N 0.09 deleterious(0) benign(0.125) TCGA-AA-3663-01 13 50279819 50279819 T - KPNA3 Frame_Shift_Del p.N437Tfs*3 0.31 TCGA-AA-3663-01 13 50587545 50587545 T C TRIM13 3'Flank 0.36 TCGA-AA-3663-01 13 52593203 52593203 T - ALG11 Frame_Shift_Del p.H69Ifs*18 0.23 TCGA-AA-3663-01 13 53418656 53418656 G A PCDH8 3'UTR 0.30 TCGA-AA-3663-01 13 58208440 58208440 C T PCDH17 Missense_Mutation p.T587M 0.07 tolerated(0.28) benign(0.132) TCGA-AA-3663-01 13 58208616 58208616 C A PCDH17 Missense_Mutation p.R646S 0.42 deleterious(0.02) probably_damaging(0.95) TCGA-AA-3663-01 13 76055789 76055789 A G TBC1D4 Missense_Mutation p.W39R 0.44 tolerated(0.41) benign(0.282) TCGA-AA-3663-01 13 76415291 76415291 G T LMO7 Missense_Mutation p.R977M 0.44 deleterious(0) probably_damaging(0.928) TCGA-AA-3663-01 13 77635909 77635909 T C MYCBP2 Missense_Mutation p.H4226R 0.26 probably_damaging(0.942) TCGA-AA-3663-01 13 78492503 78492503 G A EDNRB Missense_Mutation p.A159V 0.44 deleterious(0.05) benign(0.381) TCGA-AA-3663-01 13 84454544 84454544 A C SLITRK1 Missense_Mutation p.L367V 0.08 tolerated(0.13) benign(0.006) TCGA-AA-3663-01 13 95673779 95673779 A - ABCC4 3'UTR 0.26 TCGA-AA-3663-01 13 96665628 96665628 A G UGGT2 Missense_Mutation p.F198S 0.43 deleterious(0.01) probably_damaging(0.982) TCGA-AA-3663-01 13 97640041 97640041 A G OXGR1 5'UTR 0.34 TCGA-AA-3663-01 13 99127215 99127215 A G STK24 Missense_Mutation p.S165P 0.51 deleterious(0) probably_damaging(0.973) TCGA-AA-3663-01 13 99354774 99354774 C A SLC15A1 Missense_Mutation p.G476C 0.52 deleterious(0.02) benign(0.438) TCGA-AA-3663-01 14 100331899 100331899 G A EML1 Missense_Mutation p.G100D 0.42 deleterious(0.02) possibly_damaging(0.856) TCGA-AA-3663-01 14 101350948 101350949 - G RTL1 Frame_Shift_Ins p.S60Qfs*13 0.28 TCGA-AA-3663-01 14 102516128 102516128 C A DYNC1H1 Silent p.A4531A 0.36 TCGA-AA-3663-01 14 103396268 103396268 A G AMN Missense_Mutation p.Y284C 0.25 deleterious(0.01) possibly_damaging(0.891) TCGA-AA-3663-01 14 103406168 103406168 G A CDC42BPB Nonsense_Mutation p.R1570* 0.38 TCGA-AA-3663-01 14 105268045 105268045 C T ZBTB42 Nonsense_Mutation p.R171* 0.45 TCGA-AA-3663-01 14 105408633 105408633 C T AHNAK2 Silent p.Q4385Q 0.43 TCGA-AA-3663-01 14 105410953 105410953 T G AHNAK2 Missense_Mutation p.K3612T 0.37 benign(0.096) TCGA-AA-3663-01 14 105452801 105452801 T - C14orf79 Frame_Shift_Del p.L12* 0.33 TCGA-AA-3663-01 14 105609122 105609122 C T JAG2 Silent p.P1209P 0.35 TCGA-AA-3663-01 14 106091334 106091334 G C IGHG4 Missense_Mutation p.T187S 0.22 tolerated(0.1) benign(0.001) TCGA-AA-3663-01 14 106321084 106321084 G A IGHM Missense_Mutation p.T302M 0.49 deleterious(0.04) benign(0.126) TCGA-AA-3663-01 14 106322270 106322270 C T IGHM Silent p.P18P 0.50 TCGA-AA-3663-01 14 106375779 106375779 T C IGHD1-7 Missense_Mutation p.I2V 0.35 benign(0.213) TCGA-AA-3663-01 14 106471537 106471537 C A IGHV1-3 Missense_Mutation p.Q20H 0.55 deleterious(0) probably_damaging(0.971) TCGA-AA-3663-01 14 106725257 106725257 A G IGHV3-23 Missense_Mutation p.Y99H 0.16 deleterious_low_confidence(0.04) benign(0.165) TCGA-AA-3663-01 14 20846338 20846338 C - TEP1 Frame_Shift_Del p.V1856Lfs*45 0.37 TCGA-AA-3663-01 14 21556192 21556192 C - ARHGEF40 Frame_Shift_Del p.H1487Tfs*15 0.28 TCGA-AA-3663-01 14 21679522 21679522 C - HNRNPC Intron 0.32 TCGA-AA-3663-01 14 21811278 21811278 G T RPGRIP1 Missense_Mutation p.Q1141H 0.12 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 14 21819269 21819269 G A RPGRIP1 Missense_Mutation p.S1252N 0.36 tolerated(0.15) benign(0.014) TCGA-AA-3663-01 14 21827736 21827736 C T SUPT16H Silent p.T736T 0.36 TCGA-AA-3663-01 14 21860778 21860778 C A CHD8 Missense_Mutation p.S2220I 0.47 tolerated(0.14) benign(0.403) TCGA-AA-3663-01 14 21967100 21967102 CTA - TOX4 3'UTR 0.25 TCGA-AA-3663-01 14 21993657 21993657 G T SALL2 Missense_Mutation p.Q69K 0.26 tolerated(0.13) benign(0.046) TCGA-AA-3663-01 14 23415915 23415915 T C HAUS4 Missense_Mutation p.D304G 0.41 deleterious(0.04) probably_damaging(0.95) TCGA-AA-3663-01 14 23512183 23512183 A G PSMB11 Missense_Mutation p.K250R 0.35 tolerated(0.07) benign(0.036) TCGA-AA-3663-01 14 23518351 23518351 G A CDH24 Silent p.C615C 0.49 TCGA-AA-3663-01 14 23524512 23524512 G A CDH24 Silent p.T84T 0.42 TCGA-AA-3663-01 14 23597262 23597262 C T SLC7A8 Nonsense_Mutation p.W469* 0.08 TCGA-AA-3663-01 14 23597380 23597380 T C SLC7A8 Missense_Mutation p.Y430C 0.07 deleterious(0) probably_damaging(0.983) TCGA-AA-3663-01 14 23745395 23745395 C A HOMEZ Nonsense_Mutation p.E348* 0.26 TCGA-AA-3663-01 14 23746117 23746117 C T HOMEZ Missense_Mutation p.R107H 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 14 23821233 23821233 G A SLC22A17 Missense_Mutation p.P64L 0.45 tolerated(0.19) probably_damaging(0.982) TCGA-AA-3663-01 14 23865496 23865496 C T MYH6 Missense_Mutation p.R809H 0.36 deleterious(0.01) possibly_damaging(0.85) TCGA-AA-3663-01 14 24567447 24567447 G A PCK2 Missense_Mutation p.R104Q 0.34 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 14 24618074 24618074 C A RNF31 Missense_Mutation p.P207H 0.08 tolerated(0.19) possibly_damaging(0.479) TCGA-AA-3663-01 14 24619975 24619975 C - RNF31 Frame_Shift_Del p.K458Sfs*34 0.27 TCGA-AA-3663-01 14 24648320 24648320 T C REC8 Silent p.V410V 0.33 TCGA-AA-3663-01 14 24652554 24652554 T C IPO4 Missense_Mutation p.H710R 0.35 tolerated(0.07) possibly_damaging(0.548) TCGA-AA-3663-01 14 24664181 24664181 C T TM9SF1 Silent p.L15L 0.43 TCGA-AA-3663-01 14 24761912 24761912 G A DHRS1 Silent p.S151S 0.21 TCGA-AA-3663-01 14 24795366 24795366 C T ADCY4 Missense_Mutation p.R525H 0.40 tolerated(0.19) possibly_damaging(0.837) TCGA-AA-3663-01 14 24900830 24900830 C A KHNYN Silent p.I121I 0.36 TCGA-AA-3663-01 14 24906376 24906376 A G KHNYN Missense_Mutation p.Q641R 0.38 deleterious(0.04) probably_damaging(0.977) TCGA-AA-3663-01 14 25101306 25101306 G A GZMB Missense_Mutation p.R120W 0.34 deleterious(0.04) benign(0.067) TCGA-AA-3663-01 14 31056013 31056013 T C G2E3 Missense_Mutation p.Y43H 0.29 deleterious(0) probably_damaging(0.969) TCGA-AA-3663-01 14 31814364 31814364 T C HEATR5A Missense_Mutation p.H703R 0.37 deleterious(0) possibly_damaging(0.697) TCGA-AA-3663-01 14 34931368 34931368 A G SPTSSA Missense_Mutation p.F16L 0.43 tolerated(1) benign(0.003) TCGA-AA-3663-01 14 37132701 37132701 C A PAX9 Missense_Mutation p.L202M 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 14 37641462 37641462 C T SLC25A21-AS1 5'UTR 0.36 TCGA-AA-3663-01 14 38061878 38061878 G A FOXA1 Silent p.G37G 0.07 TCGA-AA-3663-01 14 38679205 38679205 G C SSTR1 Missense_Mutation p.G204A 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3663-01 14 39502324 39502324 A G SEC23A 3'UTR 0.30 TCGA-AA-3663-01 14 42356271 42356271 C T LRFN5 Missense_Mutation p.A148V 0.44 deleterious(0.01) benign(0.314) TCGA-AA-3663-01 14 47120273 47120273 G T RPL10L 3'UTR 0.38 TCGA-AA-3663-01 14 47613332 47613333 - A MDGA2 Frame_Shift_Ins p.L247Ffs*6 0.27 TCGA-AA-3663-01 14 50789306 50789306 T C ATP5S Missense_Mutation p.V77A 0.13 tolerated(0.09) probably_damaging(0.999) TCGA-AA-3663-01 14 52182086 52182086 G A FRMD6 Missense_Mutation p.R298Q 0.37 tolerated(0.15) probably_damaging(0.953) TCGA-AA-3663-01 14 55236867 55236867 C T SAMD4A Nonsense_Mutation p.Q548* 0.41 TCGA-AA-3663-01 14 55512804 55512804 A - SOCS4 3'UTR 0.22 TCGA-AA-3663-01 14 55516171 55516171 T C SOCS4 3'UTR 0.25 TCGA-AA-3663-01 14 55817461 55817461 A - FBXO34 Frame_Shift_Del p.I120Lfs*13 0.25 TCGA-AA-3663-01 14 55819519 55819519 A G FBXO34 3'UTR 0.16 TCGA-AA-3663-01 14 59006847 59006847 A G KIAA0586 Silent p.V1549V 0.40 TCGA-AA-3663-01 14 60212509 60212509 C G RTN1 Missense_Mutation p.S311T 0.06 deleterious(0.04) possibly_damaging(0.787) TCGA-AA-3663-01 14 60928229 60928229 A G C14orf39 Missense_Mutation p.V352A 0.08 deleterious(0) benign(0.034) TCGA-AA-3663-01 14 61446257 61446257 C T TRMT5 Missense_Mutation p.R120H 0.41 deleterious(0.01) benign(0.261) TCGA-AA-3663-01 14 61748159 61748159 T - TMEM30B 5'UTR 0.27 TCGA-AA-3663-01 14 62261793 62261793 A - SNAPC1 3'UTR 0.32 TCGA-AA-3663-01 14 63920430 63920430 T C PPP2R5E Missense_Mutation p.T111A 0.33 tolerated(0.24) benign(0.005) TCGA-AA-3663-01 14 64450478 64450478 A - SYNE2 Frame_Shift_Del p.K677Nfs*30 0.35 TCGA-AA-3663-01 14 64746820 64746820 A G ESR2 Silent p.T138T 0.50 TCGA-AA-3663-01 14 64937926 64937926 A C AKAP5 3'UTR 0.35 TCGA-AA-3663-01 14 64938976 64938976 A G AKAP5 3'UTR 0.10 TCGA-AA-3663-01 14 65208952 65208952 G A PLEKHG3 Missense_Mutation p.R850H 0.38 tolerated(0.14) benign(0.046) TCGA-AA-3663-01 14 65253378 65253378 T C SPTB Missense_Mutation p.Q1102R 0.32 tolerated(0.16) benign(0.014) TCGA-AA-3663-01 14 68217762 68217762 C T ZFYVE26 Intron 0.43 TCGA-AA-3663-01 14 68273325 68273325 C T ZFYVE26 Silent p.E318E 0.44 TCGA-AA-3663-01 14 71517431 71517431 A G PCNX Silent p.T1467T 0.41 TCGA-AA-3663-01 14 72054632 72054632 A G SIPA1L1 Missense_Mutation p.T15A 0.33 tolerated(0.76) benign(0.009) TCGA-AA-3663-01 14 73141016 73141016 C - DPF3 Frame_Shift_Del p.G268Afs*4 0.31 TCGA-AA-3663-01 14 73726058 73726058 G A PAPLN Missense_Mutation p.G570D 0.37 tolerated(0.32) possibly_damaging(0.662) TCGA-AA-3663-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.37 TCGA-AA-3663-01 14 74206331 74206331 C A ELMSAN1 Missense_Mutation p.Q127H 0.38 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-3663-01 14 74363097 74363097 G A ZNF410 Missense_Mutation p.G100D 0.08 tolerated_low_confidence(0.22) benign(0.047) TCGA-AA-3663-01 14 74766251 74766251 C A ABCD4 Silent p.T95T 0.39 TCGA-AA-3663-01 14 74946892 74946892 A G NPC2 3'UTR 0.15 TCGA-AA-3663-01 14 74967708 74967708 T C LTBP2 Missense_Mutation p.N1782S 0.12 tolerated(0.58) possibly_damaging(0.799) TCGA-AA-3663-01 14 75265444 75265444 A C YLPM1 Silent p.R1148R 0.34 TCGA-AA-3663-01 14 75282906 75282906 A G YLPM1 Missense_Mutation p.I1835V 0.43 possibly_damaging(0.79) TCGA-AA-3663-01 14 75537840 75537840 G T ZC2HC1C Silent p.V188V 0.42 TCGA-AA-3663-01 14 77808247 77808247 C T TMED8 Missense_Mutation p.R282Q 0.48 tolerated(0.09) probably_damaging(1) TCGA-AA-3663-01 14 78174553 78174553 T C SLIRP Splice_Site p.X33_splice 0.39 TCGA-AA-3663-01 14 81994051 81994051 A C SEL1L Missense_Mutation p.D34E 0.33 tolerated_low_confidence(0.74) benign(0.002) TCGA-AA-3663-01 14 86087945 86087945 G T FLRT2 Missense_Mutation p.Q29H 0.34 tolerated(0.57) benign(0.009) TCGA-AA-3663-01 14 86088874 86088874 G A FLRT2 Missense_Mutation p.C339Y 0.37 deleterious(0) probably_damaging(0.993) TCGA-AA-3663-01 14 86089581 86089581 C A FLRT2 Missense_Mutation p.Q575K 0.34 tolerated(0.29) benign(0.07) TCGA-AA-3663-01 14 86090751 86090751 T C FLRT2 3'UTR 0.41 TCGA-AA-3663-01 14 88401004 88401004 A G GALC 3'UTR 0.27 TCGA-AA-3663-01 14 89172769 89172769 C T EML5 Silent p.G553G 0.28 TCGA-AA-3663-01 14 89628925 89628925 G A FOXN3 Missense_Mutation p.P436S 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3663-01 14 90755078 90755078 C T NRDE2 Missense_Mutation p.A881T 0.08 tolerated(0.11) benign(0.016) TCGA-AA-3663-01 14 90767611 90767611 C T NRDE2 Missense_Mutation p.S506N 0.30 tolerated(0.13) benign(0.118) TCGA-AA-3663-01 14 90770332 90770332 C T NRDE2 Missense_Mutation p.V318M 0.41 deleterious(0.01) possibly_damaging(0.839) TCGA-AA-3663-01 14 91773551 91773551 G A CCDC88C Missense_Mutation p.T1009I 0.08 tolerated(0.14) benign(0) TCGA-AA-3663-01 14 91776286 91776286 C T CCDC88C Silent p.E927E 0.12 TCGA-AA-3663-01 14 92624055 92624055 A - CPSF2 Frame_Shift_Del p.I552Sfs*5 0.28 TCGA-AA-3663-01 14 93180174 93180174 G A LGMN Silent p.Y179Y 0.43 TCGA-AA-3663-01 14 93712261 93712261 T C BTBD7 Silent p.A831A 0.13 TCGA-AA-3663-01 14 94772437 94772437 T C SERPINA6 Missense_Mutation p.T335A 0.39 tolerated(0.1) benign(0.116) TCGA-AA-3663-01 14 95078676 95078676 G A SERPINA3 5'Flank 0.57 TCGA-AA-3663-01 14 96707697 96707697 G T BDKRB2 Missense_Mutation p.W344C 0.46 tolerated(0.11) benign(0.428) TCGA-AA-3663-01 14 96730139 96730139 G A BDKRB1 Silent p.L40L 0.43 TCGA-AA-3663-01 14 96752210 96752210 A G ATG2B Missense_Mutation p.V2040A 0.43 deleterious(0) probably_damaging(0.973) TCGA-AA-3663-01 14 96761299 96761299 A - ATG2B Frame_Shift_Del p.F1808Lfs*28 0.21 TCGA-AA-3663-01 14 96761360 96761360 C A ATG2B Missense_Mutation p.G1788V 0.11 deleterious(0.01) possibly_damaging(0.637) TCGA-AA-3663-01 15 100250869 100250869 C T MEF2A Missense_Mutation p.A341V 0.26 tolerated(0.06) probably_damaging(0.971) TCGA-AA-3663-01 15 22369278 22369278 A G OR4M2 Missense_Mutation p.T235A 0.10 tolerated(0.16) benign(0.002) TCGA-AA-3663-01 15 24926961 24926961 G T NPAP1 3'UTR 0.40 TCGA-AA-3663-01 15 24927864 24927864 T - NPAP1 3'UTR 0.28 TCGA-AA-3663-01 15 28377284 28377284 C T HERC2 Missense_Mutation p.G4178S 0.35 probably_damaging(1) TCGA-AA-3663-01 15 29346576 29346576 C T APBA2 Silent p.G163G 0.41 TCGA-AA-3663-01 15 30025508 30025508 C T TJP1 Missense_Mutation p.R509H 0.32 deleterious(0) probably_damaging(0.943) TCGA-AA-3663-01 15 33916070 33916070 C T RYR3 Missense_Mutation p.A807V 0.34 benign(0.37) TCGA-AA-3663-01 15 34102701 34102701 C T RYR3 Missense_Mutation p.R3350W 0.39 probably_damaging(0.952) TCGA-AA-3663-01 15 35085654 35085654 G A ACTC1 Silent p.D82D 0.11 TCGA-AA-3663-01 15 35274861 35274861 G - ZNF770 Frame_Shift_Del p.L259Cfs*5 0.09 TCGA-AA-3663-01 15 35530108 35530108 T C ANP32AP1 RNA 0.35 TCGA-AA-3663-01 15 39886363 39886363 C T THBS1 Missense_Mutation p.R1111C 0.29 deleterious(0.02) probably_damaging(0.914) TCGA-AA-3663-01 15 40396471 40396471 G - BMF Frame_Shift_Del p.E122Kfs*51 0.27 TCGA-AA-3663-01 15 40633104 40633104 C A C15orf52 Missense_Mutation p.G17C 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3663-01 15 40683711 40683711 C A KNSTRN Missense_Mutation p.L235M 0.30 deleterious(0.01) probably_damaging(0.959) TCGA-AA-3663-01 15 41829257 41829257 C T RPAP1 Missense_Mutation p.A23T 0.09 tolerated(0.21) benign(0.011) TCGA-AA-3663-01 15 41862463 41862463 C A TYRO3 Silent p.R470R 0.08 TCGA-AA-3663-01 15 42021441 42021442 - A MGA Frame_Shift_Ins p.E1249Rfs*25 0.21 TCGA-AA-3663-01 15 42042255 42042255 G A MGA Silent p.Q2150Q 0.41 TCGA-AA-3663-01 15 42105244 42105244 G T MAPKBP1 Missense_Mutation p.G255V 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 15 43018586 43018586 C T CDAN1 Silent p.R1042R 0.48 TCGA-AA-3663-01 15 43028222 43028222 G T CDAN1 Silent p.L208L 0.09 TCGA-AA-3663-01 15 43164918 43164918 G A TTBK2 Silent p.Y36Y 0.35 TCGA-AA-3663-01 15 43438760 43438760 G A TMEM62 Silent p.S182S 0.42 TCGA-AA-3663-01 15 43487040 43487040 C A CCNDBP1 3'UTR 0.39 TCGA-AA-3663-01 15 43817651 43817651 C T MAP1A Missense_Mutation p.P1327L 0.29 benign(0.031) TCGA-AA-3663-01 15 43818921 43818921 C A MAP1A Silent p.P1750P 0.46 TCGA-AA-3663-01 15 43851024 43851024 G T PPIP5K1 Silent p.R1118R 0.29 TCGA-AA-3663-01 15 45365653 45365653 G T SORD Missense_Mutation p.E333D 0.20 tolerated(0.21) benign(0.001) TCGA-AA-3663-01 15 48441566 48441566 C A MYEF2 Missense_Mutation p.G461C 0.45 deleterious(0.04) possibly_damaging(0.784) TCGA-AA-3663-01 15 49285041 49285041 G T SECISBP2L Missense_Mutation p.S902R 0.11 tolerated(0.15) benign(0.025) TCGA-AA-3663-01 15 49308885 49308885 T C SECISBP2L Missense_Mutation p.K478R 0.44 deleterious(0.04) benign(0.19) TCGA-AA-3663-01 15 49716406 49716406 T C FGF7 5'UTR 0.30 TCGA-AA-3663-01 15 50272005 50272005 A - ATP8B4 Frame_Shift_Del p.F281Lfs*4 0.28 TCGA-AA-3663-01 15 50789322 50789322 A C USP8 Missense_Mutation p.T978P 0.41 deleterious(0.01) possibly_damaging(0.765) TCGA-AA-3663-01 15 51984435 51984435 A C SCG3 Missense_Mutation p.N257T 0.32 tolerated_low_confidence(0.08) benign(0.005) TCGA-AA-3663-01 15 51991601 51991601 T C SCG3 Splice_Site p.X357_splice 0.13 TCGA-AA-3663-01 15 52425628 52425628 G A GNB5 Silent p.S270S 0.40 TCGA-AA-3663-01 15 54914582 54914582 C - UNC13C Frame_Shift_Del p.P2056Qfs*10 0.23 TCGA-AA-3663-01 15 55652116 55652116 T C CCPG1 Missense_Mutation p.R619G 0.10 tolerated(0.4) benign(0.002) TCGA-AA-3663-01 15 56388508 56388508 A G RFX7 Missense_Mutation p.V473A 0.27 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 15 58006972 58006972 A G POLR2M 3'UTR 0.12 TCGA-AA-3663-01 15 58007033 58007033 G A POLR2M 3'UTR 0.15 TCGA-AA-3663-01 15 59009783 59009783 G T ADAM10 Missense_Mutation p.H67N 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-AA-3663-01 15 59516946 59516946 A C MYO1E Missense_Mutation p.L240R 0.38 tolerated(0.11) benign(0.345) TCGA-AA-3663-01 15 62160931 62160931 G - VPS13C Frame_Shift_Del p.P3597Lfs*3 0.18 TCGA-AA-3663-01 15 62256915 62256915 T - VPS13C Frame_Shift_Del p.N1066Ifs*25 0.26 TCGA-AA-3663-01 15 64021461 64021461 T C HERC1 Missense_Mutation p.N1043S 0.10 possibly_damaging(0.684) TCGA-AA-3663-01 15 64041673 64041673 A G HERC1 Silent p.G704G 0.34 TCGA-AA-3663-01 15 64048888 64048888 G A HERC1 Silent p.C427C 0.39 TCGA-AA-3663-01 15 65445960 65445960 A T CLPX Silent p.T543T 0.32 TCGA-AA-3663-01 15 65957025 65957025 T - DENND4A Frame_Shift_Del p.S1798Vfs*10 0.33 TCGA-AA-3663-01 15 69548164 69548164 C T GLCE Missense_Mutation p.R7W 0.48 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-AA-3663-01 15 69682037 69682037 A G PAQR5 Missense_Mutation p.M144V 0.41 tolerated(1) benign(0) TCGA-AA-3663-01 15 71174900 71174901 AG - THAP10 Frame_Shift_Del p.F223* 0.33 TCGA-AA-3663-01 15 71535345 71535346 - G THSD4 Frame_Shift_Ins p.A276Gfs*36 0.31 TCGA-AA-3663-01 15 73045003 73045003 A G ADPGK Silent p.T390T 0.08 TCGA-AA-3663-01 15 75722528 75722528 C A SIN3A Missense_Mutation p.Q63H 0.38 deleterious(0) probably_damaging(0.988) TCGA-AA-3663-01 15 76673957 76673957 C A SCAPER Splice_Site p.X1156_splice 0.33 TCGA-AA-3663-01 15 76763600 76763600 T C SCAPER Missense_Mutation p.S1011G 0.42 tolerated(0.07) probably_damaging(0.928) TCGA-AA-3663-01 15 77425576 77425576 C T PEAK1 Missense_Mutation p.R1283Q 0.25 tolerated(0.26) benign(0.042) TCGA-AA-3663-01 15 77473111 77473111 A G PEAK1 Silent p.N386N 0.25 TCGA-AA-3663-01 15 77907531 77907531 G A LINGO1 Nonsense_Mutation p.R240* 0.42 TCGA-AA-3663-01 15 78208887 78208887 C T RP11-114H24.7 RNA 0.22 TCGA-AA-3663-01 15 78568023 78568023 C T DNAJA4 Missense_Mutation p.T306M 0.44 tolerated(0.08) benign(0.032) TCGA-AA-3663-01 15 78805484 78805484 T C HYKK Silent p.S18S 0.11 TCGA-AA-3663-01 15 78873247 78873247 C - CHRNA5 Frame_Shift_Del p.L68* 0.24 TCGA-AA-3663-01 15 80872823 80872823 A - ARNT2 Frame_Shift_Del p.I563Sfs*5 0.29 TCGA-AA-3663-01 15 81436133 81436133 G A C15orf26 Missense_Mutation p.R203H 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3663-01 15 81565434 81565434 C A IL16 Missense_Mutation p.L227M 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 15 83434013 83434013 G T FSD2 Silent p.P575P 0.28 TCGA-AA-3663-01 15 84592766 84592766 A G ADAMTSL3 Missense_Mutation p.T700A 0.12 tolerated(0.46) benign(0.005) TCGA-AA-3663-01 15 85334028 85334028 G A ZNF592 Silent p.P771P 0.45 TCGA-AA-3663-01 15 85400267 85400267 A - ALPK3 Frame_Shift_Del p.K970Nfs*12 0.31 TCGA-AA-3663-01 15 90611584 90611584 C T ZNF710 Silent p.R405R 0.49 TCGA-AA-3663-01 15 90611651 90611651 T C ZNF710 Missense_Mutation p.S428P 0.11 deleterious(0.01) benign(0.383) TCGA-AA-3663-01 15 91504261 91504261 G A RCCD1 Missense_Mutation p.G319E 0.50 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 15 91542243 91542243 C T VPS33B Missense_Mutation p.A606T 0.12 tolerated(0.68) benign(0.013) TCGA-AA-3663-01 15 94928755 94928755 G A MCTP2 Splice_Site p.X596_splice 0.10 TCGA-AA-3663-01 15 96876701 96876702 CT - NR2F2 Intron 0.31 TCGA-AA-3663-01 15 99672066 99672066 C A SYNM Silent p.A1166A 0.29 TCGA-AA-3663-01 16 10855378 10855378 G T NUBP1 Intron 0.46 TCGA-AA-3663-01 16 11001516 11001516 G A CIITA Missense_Mutation p.A723T 0.41 tolerated(0.3) benign(0.258) TCGA-AA-3663-01 16 11016050 11016050 T C CIITA Missense_Mutation p.V1059A 0.23 tolerated(1) benign(0) TCGA-AA-3663-01 16 11362744 11362744 A G TNP2 Missense_Mutation p.Y126H 0.44 tolerated(0.25) possibly_damaging(0.727) TCGA-AA-3663-01 16 11771955 11771955 T A SNN 3'UTR 0.31 TCGA-AA-3663-01 16 1246002 1246002 C T CACNA1H Missense_Mutation p.R208C 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 16 1270028 1270028 G T CACNA1H Missense_Mutation p.R2032S 0.40 tolerated(0.24) benign(0.055) TCGA-AA-3663-01 16 1278612 1278612 G T TPSB2 3'UTR 0.59 TCGA-AA-3663-01 16 1374749 1374749 C T UBE2I Silent p.Y144Y 0.43 TCGA-AA-3663-01 16 15022308 15022308 G A RP11-958N24.1 RNA 0.07 TCGA-AA-3663-01 16 15095712 15095712 A G PDXDC1 Missense_Mutation p.R81G 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-AA-3663-01 16 15131990 15131990 T - NTAN1 Frame_Shift_Del p.K277Nfs*83 0.21 TCGA-AA-3663-01 16 15788066 15788066 C T NDE1 Missense_Mutation p.R250W 0.33 deleterious(0.05) probably_damaging(0.929) TCGA-AA-3663-01 16 1828236 1828236 A G SPSB3 Missense_Mutation p.Y131H 0.39 deleterious(0.04) possibly_damaging(0.831) TCGA-AA-3663-01 16 19680559 19680559 C T C16orf62 Missense_Mutation p.P856S 0.06 tolerated(1) benign(0.005) TCGA-AA-3663-01 16 19702794 19702794 G A C16orf62 Splice_Site p.X971_splice 0.46 TCGA-AA-3663-01 16 2018823 2018823 C A RNF151 Missense_Mutation p.A212D 0.22 tolerated(0.67) benign(0.055) TCGA-AA-3663-01 16 20328650 20328650 T G GP2 Missense_Mutation p.Q437P 0.49 tolerated(0.22) benign(0.018) TCGA-AA-3663-01 16 21415149 21415149 G A NPIPB3 Missense_Mutation p.P474S 0.75 benign(0.015) TCGA-AA-3663-01 16 22358801 22358801 T C CDR2 Missense_Mutation p.K284E 0.43 tolerated(0.79) possibly_damaging(0.661) TCGA-AA-3663-01 16 2283133 2283133 C T E4F1 Silent p.V335V 0.48 TCGA-AA-3663-01 16 24226008 24226009 - T PRKCB Frame_Shift_Ins p.T634Hfs*19 0.26 TCGA-AA-3663-01 16 24988638 24988638 A C ARHGAP17 Missense_Mutation p.I32M 0.27 deleterious(0) probably_damaging(0.986) TCGA-AA-3663-01 16 27079526 27079526 C T C16orf82 RNA 0.17 TCGA-AA-3663-01 16 27079813 27079813 C T C16orf82 RNA 0.29 TCGA-AA-3663-01 16 27518173 27518173 G C GTF3C1 Missense_Mutation p.T516S 0.40 tolerated(0.28) benign(0.012) TCGA-AA-3663-01 16 27561482 27561482 G A KIAA0556 5'UTR 0.31 TCGA-AA-3663-01 16 27751682 27751683 - A KIAA0556 Frame_Shift_Ins p.D690Rfs*21 0.21 TCGA-AA-3663-01 16 2810496 2810496 A C SRRM2 Missense_Mutation p.K343T 0.36 unknown(0) TCGA-AA-3663-01 16 28117811 28117811 A G XPO6 Silent p.T835T 0.26 TCGA-AA-3663-01 16 28118961 28118961 T G XPO6 Missense_Mutation p.E793D 0.31 tolerated(0.57) benign(0.002) TCGA-AA-3663-01 16 2813182 2813182 A G SRRM2 Missense_Mutation p.T885A 0.27 benign(0.184) TCGA-AA-3663-01 16 2814709 2814709 G A SRRM2 Missense_Mutation p.A1394T 0.36 unknown(0) TCGA-AA-3663-01 16 2821582 2821582 A G TCEB2 Missense_Mutation p.M126T 0.12 deleterious_low_confidence(0.02) benign(0.001) TCGA-AA-3663-01 16 28855374 28855374 T C TUFM Missense_Mutation p.N324S 0.35 deleterious(0.02) benign(0.029) TCGA-AA-3663-01 16 29820927 29820927 C A MAZ Missense_Mutation p.A449D 0.26 tolerated_low_confidence(0.1) benign(0.144) TCGA-AA-3663-01 16 29825012 29825012 G - PRRT2 Frame_Shift_Del p.A214Pfs*15 0.17 TCGA-AA-3663-01 16 30020817 30020817 A G DOC2A Silent p.C108C 0.42 TCGA-AA-3663-01 16 30021293 30021293 G A DOC2A Missense_Mutation p.S84L 0.35 deleterious(0) benign(0.315) TCGA-AA-3663-01 16 30567325 30567325 G A ZNF764 Silent p.A139A 0.41 TCGA-AA-3663-01 16 30664413 30664413 C - PRR14 Frame_Shift_Del p.A167Lfs*21 0.30 TCGA-AA-3663-01 16 30724608 30724608 G A SRCAP Missense_Mutation p.R737H 0.30 unknown(0) TCGA-AA-3663-01 16 30734468 30734468 T C SRCAP Silent p.G1359G 0.33 TCGA-AA-3663-01 16 30773986 30773986 C T RNF40 Silent p.G40G 0.13 TCGA-AA-3663-01 16 3080500 3080500 G T CCDC64B Missense_Mutation p.H238N 0.11 deleterious(0.04) possibly_damaging(0.893) TCGA-AA-3663-01 16 31012315 31012316 - T STX1B Frame_Shift_Ins p.Q72Tfs*29 0.31 TCGA-AA-3663-01 16 31089711 31089711 T C ZNF646 Missense_Mutation p.L689P 0.10 tolerated(0.08) possibly_damaging(0.555) TCGA-AA-3663-01 16 31091394 31091394 G A ZNF646 Missense_Mutation p.R1250H 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 16 31092771 31092771 G A ZNF646 Missense_Mutation p.C1709Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 16 31152813 31152813 C T PRSS36 Silent p.L626L 0.33 TCGA-AA-3663-01 16 31196420 31196420 C T FUS Silent p.G228G 0.45 TCGA-AA-3663-01 16 31371330 31371330 T A ITGAX Silent p.A217A 0.28 TCGA-AA-3663-01 16 31501867 31501867 G A SLC5A2 3'UTR 0.36 TCGA-AA-3663-01 16 319137 319137 C - RGS11 3'UTR 0.49 TCGA-AA-3663-01 16 31926967 31926967 G A ZNF267 Missense_Mutation p.C466Y 0.35 deleterious(0.01) probably_damaging(1) TCGA-AA-3663-01 16 32266578 32266578 T C TP53TG3D 3'UTR 0.33 TCGA-AA-3663-01 16 33020651 33020651 A C IGHV3OR16-8 Missense_Mutation p.E20A 0.32 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-AA-3663-01 16 3350693 3350693 T - TIGD7 5'UTR 0.32 TCGA-AA-3663-01 16 3458560 3458560 C A ZNF174 Missense_Mutation p.L289I 0.42 tolerated(0.14) benign(0.133) TCGA-AA-3663-01 16 3641292 3641292 C T SLX4 Missense_Mutation p.V783I 0.16 tolerated(0.25) possibly_damaging(0.841) TCGA-AA-3663-01 16 4242248 4242248 A G SRL Missense_Mutation p.L443P 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 16 4384871 4384871 G - GLIS2 Frame_Shift_Del p.A141Pfs*110 0.35 TCGA-AA-3663-01 16 4626398 4626398 C T C16orf96 Silent p.G639G 0.34 TCGA-AA-3663-01 16 48576831 48576831 G A N4BP1 Missense_Mutation p.A892V 0.09 deleterious(0) probably_damaging(0.973) TCGA-AA-3663-01 16 4933501 4933501 A G PPL Missense_Mutation p.F1719L 0.28 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 16 49671884 49671884 C - ZNF423 Frame_Shift_Del p.Q394Rfs*36 0.13 TCGA-AA-3663-01 16 50120248 50120248 T - HEATR3 Frame_Shift_Del p.S501Lfs*12 0.20 TCGA-AA-3663-01 16 50259141 50259141 C T PAPD5 Missense_Mutation p.S567F 0.41 deleterious(0.04) possibly_damaging(0.735) TCGA-AA-3663-01 16 53276848 53276848 C T CHD9 Nonsense_Mutation p.R992* 0.43 TCGA-AA-3663-01 16 53907766 53907766 C T FTO Nonsense_Mutation p.R322* 0.33 TCGA-AA-3663-01 16 55518015 55518015 A G MMP2 Silent p.P156P 0.43 TCGA-AA-3663-01 16 56667808 56667808 T - MT1M 3'UTR 0.41 TCGA-AA-3663-01 16 56857697 56857697 C T NUP93 Missense_Mutation p.R245C 0.49 deleterious(0) probably_damaging(0.976) TCGA-AA-3663-01 16 57059642 57059642 C T NLRC5 Nonsense_Mutation p.Q263* 0.38 TCGA-AA-3663-01 16 57113024 57113024 C - NLRC5 Frame_Shift_Del p.H1717Ifs*29 0.29 TCGA-AA-3663-01 16 57188114 57188114 T - FAM192A 3'UTR 0.40 TCGA-AA-3663-01 16 57493508 57493508 C T COQ9 Missense_Mutation p.A248V 0.45 tolerated(0.07) benign(0.077) TCGA-AA-3663-01 16 57795395 57795395 T G KIFC3 Missense_Mutation p.D601A 0.20 deleterious(0) possibly_damaging(0.496) TCGA-AA-3663-01 16 58438684 58438684 C T GINS3 3'UTR 0.38 TCGA-AA-3663-01 16 618994 618994 G - PIGQ 5'Flank 0.31 TCGA-AA-3663-01 16 66611070 66611070 G A CMTM1 Missense_Mutation p.E219K 0.40 deleterious(0.01) possibly_damaging(0.65) TCGA-AA-3663-01 16 66651064 66651064 G T CMTM4 3'UTR 0.31 TCGA-AA-3663-01 16 67005130 67005130 C T CES3 Missense_Mutation p.S400L 0.08 tolerated(0.09) benign(0.01) TCGA-AA-3663-01 16 67174471 67174471 T - C16orf70 Frame_Shift_Del p.F286Lfs*19 0.19 TCGA-AA-3663-01 16 67262279 67262279 T C TMEM208 Silent p.L42L 0.30 TCGA-AA-3663-01 16 67325226 67325226 C T KCTD19 Missense_Mutation p.A851T 0.37 deleterious(0.05) benign(0.002) TCGA-AA-3663-01 16 67327531 67327531 G A KCTD19 Missense_Mutation p.P712S 0.38 tolerated(0.12) benign(0.003) TCGA-AA-3663-01 16 67354509 67354509 G A KCTD19 Silent p.L95L 0.42 TCGA-AA-3663-01 16 67401278 67401278 C A LRRC36 Silent p.T371T 0.29 TCGA-AA-3663-01 16 67691948 67691948 G A ACD Missense_Mutation p.R469W 0.45 tolerated(0.25) benign(0) TCGA-AA-3663-01 16 67700001 67700001 A C ENKD1 Missense_Mutation p.S85A 0.40 tolerated(0.08) benign(0.18) TCGA-AA-3663-01 16 67911281 67911281 C T EDC4 Missense_Mutation p.R205C 0.32 tolerated(0.09) benign(0.002) TCGA-AA-3663-01 16 67974068 67974068 G A LCAT Silent p.G354G 0.43 TCGA-AA-3663-01 16 67974141 67974141 G A LCAT Missense_Mutation p.A330V 0.45 deleterious(0) possibly_damaging(0.703) TCGA-AA-3663-01 16 68308731 68308731 G A SLC7A6 Silent p.R34R 0.23 TCGA-AA-3663-01 16 68716390 68716390 G T CDH3 Missense_Mutation p.K394N 0.39 deleterious(0) possibly_damaging(0.879) TCGA-AA-3663-01 16 68894274 68894274 A G TANGO6 Silent p.R194R 0.46 TCGA-AA-3663-01 16 69354055 69354055 A G VPS4A Missense_Mutation p.N211S 0.33 tolerated(0.26) benign(0.002) TCGA-AA-3663-01 16 69967016 69967016 A G WWP2 Intron 0.10 TCGA-AA-3663-01 16 70934983 70934983 G - HYDIN Frame_Shift_Del p.P2991Lfs*28 0.26 TCGA-AA-3663-01 16 71710388 71710388 C A PHLPP2 Missense_Mutation p.S478I 0.51 deleterious(0.02) benign(0.19) TCGA-AA-3663-01 16 71724467 71724467 A G PHLPP2 Silent p.D188D 0.28 TCGA-AA-3663-01 16 72016033 72016033 G A PKD1L3 RNA 0.44 TCGA-AA-3663-01 16 72090109 72090109 G A HP Missense_Mutation p.V19M 0.10 deleterious_low_confidence(0.02) benign(0.276) TCGA-AA-3663-01 16 72158731 72158731 G A PMFBP1 Nonsense_Mutation p.Q842* 0.07 TCGA-AA-3663-01 16 72991476 72991476 C T ZFHX3 Missense_Mutation p.A857T 0.30 possibly_damaging(0.687) TCGA-AA-3663-01 16 74716678 74716678 G A MLKL Missense_Mutation p.P276L 0.37 deleterious(0.01) benign(0.274) TCGA-AA-3663-01 16 77228276 77228276 G A MON1B Missense_Mutation p.V174M 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 16 77398146 77398146 T C ADAMTS18 Missense_Mutation p.K304R 0.28 tolerated(0.09) benign(0.098) TCGA-AA-3663-01 16 82101847 82101847 T C HSD17B2 Missense_Mutation p.V113A 0.11 deleterious(0.05) probably_damaging(1) TCGA-AA-3663-01 16 841901 841901 C T CHTF18 Silent p.H385H 0.41 TCGA-AA-3663-01 16 85112690 85112690 T G KIAA0513 Intron 0.25 TCGA-AA-3663-01 16 86566006 86566006 G T MTHFSD Missense_Mutation p.L255I 0.43 deleterious(0.02) possibly_damaging(0.725) TCGA-AA-3663-01 16 88494611 88494611 G T ZNF469 Missense_Mutation p.G245C 0.36 probably_damaging(0.997) TCGA-AA-3663-01 16 88504867 88504867 C T ZNF469 Silent p.G3635G 0.33 TCGA-AA-3663-01 16 88505408 88505408 C - ZNF469 Frame_Shift_Del p.R3818Gfs*95 0.33 TCGA-AA-3663-01 16 88691140 88691141 - C ZC3H18 Frame_Shift_Ins p.R680Qfs*14 0.29 TCGA-AA-3663-01 16 88799090 88799090 C T PIEZO1 Silent p.L905L 0.39 TCGA-AA-3663-01 16 89620247 89620247 T C SPG7 Missense_Mutation p.M661T 0.23 deleterious(0.04) possibly_damaging(0.734) TCGA-AA-3663-01 16 89998939 89998939 T C TUBB3 Intron 0.45 TCGA-AA-3663-01 17 10296273 10296273 C T MYH8 Missense_Mutation p.A1780T 0.39 deleterious(0.04) benign(0.258) TCGA-AA-3663-01 17 10428127 10428127 G A MYH2 Missense_Mutation p.R1640C 0.38 deleterious(0.02) probably_damaging(0.913) TCGA-AA-3663-01 17 11881942 11881942 A C ZNF18 Missense_Mutation p.F328V 0.26 tolerated(0.09) benign(0.049) TCGA-AA-3663-01 17 12909100 12909100 G A ELAC2 Silent p.D280D 0.26 TCGA-AA-3663-01 17 1385799 1385799 C T MYO1C Silent p.K200K 0.37 TCGA-AA-3663-01 17 15878497 15878497 T C ADORA2B Silent p.H280H 0.27 TCGA-AA-3663-01 17 15961267 15961267 T C NCOR1 Missense_Mutation p.Q2041R 0.08 benign(0.05) TCGA-AA-3663-01 17 17046908 17046908 C T MPRIP Silent p.D358D 0.42 TCGA-AA-3663-01 17 17125838 17125838 C T FLCN Silent p.A252A 0.41 TCGA-AA-3663-01 17 1747923 1747923 C A RPA1 Missense_Mutation p.S72Y 0.28 deleterious(0.02) possibly_damaging(0.602) TCGA-AA-3663-01 17 17701079 17701079 C T RAI1 Missense_Mutation p.A1606V 0.07 tolerated(0.06) benign(0.425) TCGA-AA-3663-01 17 17726899 17726899 A G SREBF1 Silent p.G38G 0.33 TCGA-AA-3663-01 17 17787989 17787989 C T TOM1L2 Missense_Mutation p.A154T 0.09 tolerated(1) benign(0.01) TCGA-AA-3663-01 17 1787222 1787222 T C RPA1 Missense_Mutation p.L453P 0.37 deleterious(0.01) probably_damaging(0.985) TCGA-AA-3663-01 17 18061851 18061851 G T MYO15A Missense_Mutation p.R2994S 0.39 unknown(0) TCGA-AA-3663-01 17 18075505 18075507 CTT - MYO15A In_Frame_Del p.F3420del 0.32 TCGA-AA-3663-01 17 18181545 18181545 G - TOP3A Frame_Shift_Del p.R758Gfs*15 0.40 TCGA-AA-3663-01 17 18220415 18220415 T C SMCR8 Missense_Mutation p.Y438H 0.28 tolerated(0.53) benign(0.081) TCGA-AA-3663-01 17 1840706 1840706 A G RTN4RL1 Missense_Mutation p.L137P 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 17 18681926 18681926 C T FBXW10 Missense_Mutation p.A825V 0.28 deleterious(0.03) benign(0.224) TCGA-AA-3663-01 17 18874676 18874676 G A FAM83G Missense_Mutation p.P823L 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3663-01 17 18922781 18922781 C T SLC5A10 Silent p.P445P 0.32 TCGA-AA-3663-01 17 19235214 19235214 C A EPN2 Missense_Mutation p.P487H 0.36 deleterious(0.01) possibly_damaging(0.841) TCGA-AA-3663-01 17 19318170 19318170 C T RNF112 Missense_Mutation p.R366W 0.36 tolerated(0.64) benign(0) TCGA-AA-3663-01 17 19845162 19845162 T C AKAP10 Missense_Mutation p.I346M 0.25 deleterious(0.03) possibly_damaging(0.459) TCGA-AA-3663-01 17 20406505 20406505 G A RP11-434D2.7 3'Flank 0.37 TCGA-AA-3663-01 17 21101733 21101733 C T TMEM11 Silent p.R161R 0.11 TCGA-AA-3663-01 17 21320485 21320485 G A KCNJ12 3'UTR 0.13 TCGA-AA-3663-01 17 21321254 21321254 C - KCNJ12 3'UTR 0.23 TCGA-AA-3663-01 17 21322695 21322695 C A KCNJ12 3'UTR 0.42 TCGA-AA-3663-01 17 25621299 25621299 C T WSB1 5'UTR 0.45 TCGA-AA-3663-01 17 2597222 2597222 A G CLUH Missense_Mutation p.L1029P 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 17 26086031 26086031 C T NOS2 Missense_Mutation p.G1077D 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 17 26696673 26696673 G A VTN Silent p.G128G 0.39 TCGA-AA-3663-01 17 26862216 26862216 G A FOXN1 Missense_Mutation p.G543R 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 17 26881171 26881171 T C PIGS 3'UTR 0.34 TCGA-AA-3663-01 17 27003344 27003344 C T SUPT6H Missense_Mutation p.R265C 0.43 deleterious(0) probably_damaging(0.927) TCGA-AA-3663-01 17 27008914 27008914 G A SUPT6H Missense_Mutation p.A505T 0.35 tolerated(0.56) benign(0.07) TCGA-AA-3663-01 17 27028046 27028046 A G SUPT6H Missense_Mutation p.T1632A 0.37 tolerated(0.09) benign(0.164) TCGA-AA-3663-01 17 27420009 27420009 C T MYO18A Missense_Mutation p.R1646Q 0.36 deleterious(0.04) possibly_damaging(0.684) TCGA-AA-3663-01 17 27576210 27576210 C A CRYBA1 Missense_Mutation p.L28M 0.42 tolerated(1) benign(0.016) TCGA-AA-3663-01 17 27577230 27577230 G T CRYBA1 Missense_Mutation p.G43C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 17 27613818 27613818 T C NUFIP2 Silent p.L398L 0.29 TCGA-AA-3663-01 17 27959066 27959066 T C SSH2 Missense_Mutation p.N1022S 0.27 tolerated_low_confidence(0.2) benign(0.001) TCGA-AA-3663-01 17 28656474 28656474 C T TMIGD1 Silent p.L52L 0.38 TCGA-AA-3663-01 17 29220776 29220776 A - ATAD5 Frame_Shift_Del p.K1637Nfs*10 0.30 TCGA-AA-3663-01 17 29220823 29220823 A G ATAD5 Missense_Mutation p.E1651G 0.40 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 17 30814709 30814709 T C CDK5R1 Missense_Mutation p.V24A 0.12 tolerated(0.56) benign(0.007) TCGA-AA-3663-01 17 32483422 32483422 G A ASIC2 Silent p.L44L 0.26 TCGA-AA-3663-01 17 33491039 33491039 G T UNC45B Silent p.V335V 0.27 TCGA-AA-3663-01 17 3474830 3474830 G A SHPK Missense_Mutation p.R779W 0.52 deleterious(0.05) benign(0.008) TCGA-AA-3663-01 17 35297966 35297966 G A LHX1 Missense_Mutation p.A153T 0.12 tolerated(0.71) benign(0.002) TCGA-AA-3663-01 17 3543516 3543516 C T CTNS Silent p.L6L 0.37 TCGA-AA-3663-01 17 36966721 36966721 C T CWC25 Missense_Mutation p.R209K 0.06 tolerated(0.4) probably_damaging(0.99) TCGA-AA-3663-01 17 37094943 37094943 T - FBXO47 Frame_Shift_Del p.M376* 0.24 TCGA-AA-3663-01 17 37420615 37420615 G A FBXL20 Missense_Mutation p.T339I 0.47 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 17 37826511 37826511 A G PNMT Missense_Mutation p.R240G 0.31 tolerated(0.1) benign(0.255) TCGA-AA-3663-01 17 3808183 3808183 G T P2RX1 Missense_Mutation p.T109N 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 17 38178916 38178916 G - MED24 Frame_Shift_Del p.P805Rfs*53 0.22 TCGA-AA-3663-01 17 38230673 38230674 - G THRA 5'UTR 0.34 TCGA-AA-3663-01 17 3831961 3831961 C T ATP2A3 Missense_Mutation p.M992I 0.29 tolerated(0.34) benign(0.001) TCGA-AA-3663-01 17 38572285 38572285 T - TOP2A Frame_Shift_Del p.M102Cfs*14 0.10 TCGA-AA-3663-01 17 38711205 38711205 T C CCR7 Missense_Mutation p.D309G 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3663-01 17 39502757 39502757 G A KRT33A Missense_Mutation p.A347V 0.41 deleterious(0.01) probably_damaging(0.916) TCGA-AA-3663-01 17 40263417 40263417 G T DHX58 Silent p.G89G 0.45 TCGA-AA-3663-01 17 40312439 40312439 A G KCNH4 Silent p.N891N 0.28 TCGA-AA-3663-01 17 40705711 40705711 G - HSD17B1 Intron 0.48 TCGA-AA-3663-01 17 40857166 40857166 C A EZH1 Missense_Mutation p.W625C 0.49 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 17 40858070 40858070 C A EZH1 Missense_Mutation p.K598N 0.11 tolerated(0.1) probably_damaging(0.991) TCGA-AA-3663-01 17 40939870 40939870 G - WNK4 Frame_Shift_Del p.V608Cfs*53 0.33 TCGA-AA-3663-01 17 42084041 42084041 G A NAGS Missense_Mutation p.A354T 0.13 deleterious(0.02) possibly_damaging(0.74) TCGA-AA-3663-01 17 42286749 42286749 A G UBTF Missense_Mutation p.Y626H 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 17 42397486 42397486 T C SLC25A39 Splice_Site p.X322_splice 0.29 TCGA-AA-3663-01 17 42398542 42398542 T C SLC25A39 Missense_Mutation p.Q192R 0.40 tolerated(1) benign(0.008) TCGA-AA-3663-01 17 43011662 43011662 G A KIF18B Missense_Mutation p.A275V 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 17 43331772 43331772 G T SPATA32 3'UTR 0.25 TCGA-AA-3663-01 17 43893876 43893876 C T CRHR1 Missense_Mutation p.R57C 0.35 deleterious(0) possibly_damaging(0.773) TCGA-AA-3663-01 17 44791241 44791241 T C NSF Silent p.T550T 0.29 TCGA-AA-3663-01 17 45368349 45368349 G A ITGB3 Silent p.V385V 0.40 TCGA-AA-3663-01 17 45369783 45369783 C - ITGB3 Frame_Shift_Del p.R515Gfs*154 0.30 TCGA-AA-3663-01 17 45663545 45663545 A T NPEPPS Missense_Mutation p.D294V 0.13 deleterious(0.02) possibly_damaging(0.71) TCGA-AA-3663-01 17 45811233 45811233 G T TBX21 Missense_Mutation p.R138M 0.11 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 17 45890713 45890713 G T OSBPL7 Silent p.G552G 0.17 TCGA-AA-3663-01 17 46154355 46154355 T - CBX1 Frame_Shift_Del p.K4Nfs*11 0.29 TCGA-AA-3663-01 17 4644373 4644373 G A ZMYND15 Missense_Mutation p.G177D 0.45 deleterious_low_confidence(0.01) benign(0.03) TCGA-AA-3663-01 17 46607839 46607839 G - HOXB1 Frame_Shift_Del p.P143Lfs*41 0.25 TCGA-AA-3663-01 17 46700309 46700309 G A HOXB9 Missense_Mutation p.R236W 0.12 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 17 4692377 4692377 C T GLTPD2 Missense_Mutation p.A24V 0.32 tolerated_low_confidence(0.66) benign(0.089) TCGA-AA-3663-01 17 47123345 47123345 T G IGF2BP1 Missense_Mutation p.S497A 0.27 tolerated(0.44) benign(0.003) TCGA-AA-3663-01 17 47788773 47788773 G T FAM117A Silent p.P402P 0.31 TCGA-AA-3663-01 17 4789900 4789900 C T MINK1 Missense_Mutation p.R310W 0.42 deleterious(0) possibly_damaging(0.689) TCGA-AA-3663-01 17 48273554 48273554 G A COL1A1 Missense_Mutation p.R322C 0.40 unknown(0) TCGA-AA-3663-01 17 48538655 48538655 G A ACSF2 Missense_Mutation p.R126Q 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 17 48549866 48549866 C T ACSF2 Silent p.C467C 0.47 TCGA-AA-3663-01 17 48752839 48752839 T C ABCC3 Splice_Site p.X905_splice 0.09 TCGA-AA-3663-01 17 48823168 48823168 C T LUC7L3 Missense_Mutation p.R261W 0.42 deleterious(0) unknown(0) TCGA-AA-3663-01 17 5073934 5073934 T C USP6 Silent p.D1226D 0.37 TCGA-AA-3663-01 17 5364415 5364415 T A DHX33 Silent p.S231S 0.23 TCGA-AA-3663-01 17 5418361 5418361 G A NLRP1 Silent p.L1379L 0.13 TCGA-AA-3663-01 17 54672056 54672056 C T NOG Silent p.L158L 0.10 TCGA-AA-3663-01 17 56387923 56387923 C T BZRAP1 Missense_Mutation p.E1217K 0.34 tolerated(0.09) benign(0.409) TCGA-AA-3663-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.27 TCGA-AA-3663-01 17 56688601 56688601 G A TEX14 Missense_Mutation p.R375C 0.26 deleterious(0.03) possibly_damaging(0.751) TCGA-AA-3663-01 17 57076783 57076783 G A TRIM37 Silent p.G950G 0.27 TCGA-AA-3663-01 17 57128679 57128679 G A TRIM37 Missense_Mutation p.R404C 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 17 57466720 57466720 G C YPEL2 Splice_Site p.X54_splice 0.40 TCGA-AA-3663-01 17 58234865 58234865 C A CA4 Missense_Mutation p.L116M 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3663-01 17 58258875 58258875 C - USP32 Frame_Shift_Del p.G1453Afs*14 0.27 TCGA-AA-3663-01 17 58885392 58885392 A - BCAS3 Frame_Shift_Del p.R146Dfs*54 0.29 TCGA-AA-3663-01 17 60033787 60033787 A G MED13 Missense_Mutation p.W1846R 0.06 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 17 61656699 61656699 T C DCAF7 Intron 0.09 TCGA-AA-3663-01 17 61906925 61906925 T C PSMC5 Splice_Site p.X56_splice 0.32 TCGA-AA-3663-01 17 61907835 61907835 G A PSMC5 Missense_Mutation p.E176K 0.15 tolerated(0.19) benign(0.004) TCGA-AA-3663-01 17 62541846 62541855 AAAAAAGGGG - SMURF2 3'UTR 0.55 TCGA-AA-3663-01 17 63533585 63533585 G A AXIN2 Silent p.A523A 0.37 TCGA-AA-3663-01 17 64025992 64025992 C A CEP112 Missense_Mutation p.K456N 0.36 tolerated(0.2) probably_damaging(0.999) TCGA-AA-3663-01 17 6544514 6544514 G - TXNDC17 Frame_Shift_Del p.S41Afs*17 0.27 TCGA-AA-3663-01 17 65971931 65971931 A G BPTF Silent p.E2861E 0.12 TCGA-AA-3663-01 17 65989055 65989055 G A C17orf58 Intron 0.10 TCGA-AA-3663-01 17 66246587 66246587 C T AMZ2 Missense_Mutation p.R87C 0.08 tolerated(0.14) benign(0.001) TCGA-AA-3663-01 17 66352812 66352812 C A ARSG Missense_Mutation p.L191I 0.06 tolerated(0.5) benign(0.016) TCGA-AA-3663-01 17 66890431 66890431 T C ABCA8 Silent p.A933A 0.57 TCGA-AA-3663-01 17 67285437 67285437 C T ABCA5 Missense_Mutation p.V595M 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 17 68172048 68172048 G A KCNJ2 Missense_Mutation p.A290T 0.44 deleterious(0.02) benign(0.424) TCGA-AA-3663-01 17 68173110 68173111 - T KCNJ2 3'UTR 0.39 TCGA-AA-3663-01 17 71395381 71395381 G - SDK2 Frame_Shift_Del p.R1007Afs*3 0.30 TCGA-AA-3663-01 17 7139955 7139955 G T PHF23 Silent p.S97S 0.31 TCGA-AA-3663-01 17 72436711 72436711 G A GPRC5C Missense_Mutation p.G311S 0.34 deleterious(0) probably_damaging(0.982) TCGA-AA-3663-01 17 72436809 72436809 C T GPRC5C Silent p.P343P 0.35 TCGA-AA-3663-01 17 7257768 7257768 T C KCTD11 3'UTR 0.40 TCGA-AA-3663-01 17 7258036 7258036 T G KCTD11 3'UTR 0.34 TCGA-AA-3663-01 17 72877298 72877298 A G FADS6 Missense_Mutation p.L209P 0.44 deleterious(0.01) possibly_damaging(0.866) TCGA-AA-3663-01 17 73124824 73124824 C T ARMC7 Silent p.H96H 0.41 TCGA-AA-3663-01 17 73258685 73258685 A G MRPS7 Missense_Mutation p.Y64C 0.32 tolerated(0.17) benign(0.005) TCGA-AA-3663-01 17 73501069 73501069 G - CASKIN2 Frame_Shift_Del p.P339Rfs*95 0.45 TCGA-AA-3663-01 17 74046583 74046583 G A SRP68 Missense_Mutation p.R335C 0.41 deleterious(0.02) possibly_damaging(0.764) TCGA-AA-3663-01 17 74099579 74099579 G T EXOC7 Intron 0.17 TCGA-AA-3663-01 17 74383414 74383414 G - SPHK1 Frame_Shift_Del p.R387Pfs*44 0.32 TCGA-AA-3663-01 17 74540030 74540030 C T PRCD 3'Flank 0.41 TCGA-AA-3663-01 17 74772591 74772591 G A MFSD11 Missense_Mutation p.A385T 0.40 tolerated(0.1) possibly_damaging(0.578) TCGA-AA-3663-01 17 75196680 75196680 T G SEC14L1 Missense_Mutation p.Y312D 0.35 tolerated(0.22) possibly_damaging(0.736) TCGA-AA-3663-01 17 7559179 7559179 G A ATP1B2 Missense_Mutation p.R280H 0.43 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 17 76047372 76047372 C T TNRC6C Silent p.N743N 0.39 TCGA-AA-3663-01 17 76167861 76167861 C T SYNGR2 Silent p.G173G 0.14 TCGA-AA-3663-01 17 76210473 76210473 C T BIRC5 Missense_Mutation p.P26S 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 17 76354878 76354878 C - SOCS3 Frame_Shift_Del p.G100Afs*79 0.31 TCGA-AA-3663-01 17 76355095 76355095 T G SOCS3 Missense_Mutation p.K28Q 0.08 tolerated(0.15) benign(0.201) TCGA-AA-3663-01 17 76539988 76539988 C T DNAH17 Missense_Mutation p.R828H 0.41 benign(0.103) TCGA-AA-3663-01 17 7707620 7707620 C G DNAH2 Missense_Mutation p.L3007V 0.40 possibly_damaging(0.692) TCGA-AA-3663-01 17 77758700 77758700 C T CBX2 Silent p.S486S 0.39 TCGA-AA-3663-01 17 78112879 78112879 G A EIF4A3 Silent p.H223H 0.41 TCGA-AA-3663-01 17 78318750 78318750 C T RNF213 Silent p.C2205C 0.23 TCGA-AA-3663-01 17 78334002 78334004 AGA - RNF213 In_Frame_Del p.E3733del 0.42 TCGA-AA-3663-01 17 7837801 7837801 G T CNTROB Missense_Mutation p.G125V 0.34 tolerated(0.07) possibly_damaging(0.603) TCGA-AA-3663-01 17 79411800 79411800 G A RP11-1055B8.7 Silent p.Q873Q 0.08 TCGA-AA-3663-01 17 7946139 7946139 G T ALOX15B Missense_Mutation p.G205W 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3663-01 17 80274633 80274633 G A CD7 Missense_Mutation p.R103C 0.11 deleterious(0.05) possibly_damaging(0.862) TCGA-AA-3663-01 17 80404540 80404540 C A C17orf62 Missense_Mutation p.G54C 0.49 tolerated(0.07) probably_damaging(0.995) TCGA-AA-3663-01 17 8049787 8049787 A G PER1 Silent p.T647T 0.27 TCGA-AA-3663-01 17 80865658 80865658 C T TBCD Silent p.D648D 0.11 TCGA-AA-3663-01 17 81050973 81050973 T C METRNL Splice_Site p.X206_splice 0.45 TCGA-AA-3663-01 17 8133612 8133612 C A CTC1 Missense_Mutation p.R978I 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 17 8197995 8197995 C T SLC25A35 Missense_Mutation p.R44Q 0.34 deleterious(0.03) benign(0.072) TCGA-AA-3663-01 17 8215772 8215772 G A ARHGEF15 Missense_Mutation p.A139T 0.36 tolerated_low_confidence(0.33) benign(0.001) TCGA-AA-3663-01 17 910519 910519 T C ABR Silent p.S792S 0.35 TCGA-AA-3663-01 17 9615367 9615367 C A USP43 Silent p.S751S 0.39 TCGA-AA-3663-01 17 9631996 9631996 C - USP43 Frame_Shift_Del p.V1023Sfs*4 0.34 TCGA-AA-3663-01 17 9801318 9801318 C T RCVRN 3'UTR 0.38 TCGA-AA-3663-01 18 12686426 12686426 T G CEP76 Silent p.P319P 0.45 TCGA-AA-3663-01 18 13056335 13056335 C T CEP192 Missense_Mutation p.A1249V 0.27 tolerated(0.09) benign(0.392) TCGA-AA-3663-01 18 13666623 13666623 C T FAM210A Silent p.P225P 0.36 TCGA-AA-3663-01 18 14105576 14105576 C A ZNF519 Missense_Mutation p.K321N 0.25 deleterious(0.01) benign(0.276) TCGA-AA-3663-01 18 14543004 14543004 C A POTEC Missense_Mutation p.D48Y 0.05 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-AA-3663-01 18 15325714 15325714 T C RNU6-721P 5'Flank 0.35 TCGA-AA-3663-01 18 19119882 19119882 T - ESCO1 Frame_Shift_Del p.K681Rfs*13 0.08 TCGA-AA-3663-01 18 21333777 21333777 G A LAMA3 Splice_Site p.X316_splice 0.34 TCGA-AA-3663-01 18 22804548 22804548 C T ZNF521 Missense_Mutation p.G1112S 0.10 tolerated(0.99) benign(0) TCGA-AA-3663-01 18 24056585 24056585 A - KCTD1 Frame_Shift_Del p.L68Wfs*21 0.23 TCGA-AA-3663-01 18 2890611 2890611 T C EMILIN2 Silent p.G162G 0.35 TCGA-AA-3663-01 18 29116355 29116355 T C DSG2 Silent p.P538P 0.30 TCGA-AA-3663-01 18 29206287 29206287 T C B4GALT6 Silent p.S320S 0.34 TCGA-AA-3663-01 18 29487516 29487517 - A TRAPPC8 Frame_Shift_Ins p.L432Ffs*6 0.26 TCGA-AA-3663-01 18 29488732 29488732 C T TRAPPC8 Silent p.R369R 0.25 TCGA-AA-3663-01 18 30349862 30349862 G - KLHL14 Frame_Shift_Del p.V232Wfs*30 0.30 TCGA-AA-3663-01 18 30518020 30518020 A C CCDC178 Silent p.G853G 0.10 TCGA-AA-3663-01 18 32409144 32409144 T - DTNA Intron 0.29 TCGA-AA-3663-01 18 32844233 32844233 A T ZSCAN30 Missense_Mutation p.N28K 0.33 tolerated(0.45) benign(0.011) TCGA-AA-3663-01 18 32949310 32949310 T A ZNF396 Missense_Mutation p.I293F 0.37 tolerated(0.7) possibly_damaging(0.702) TCGA-AA-3663-01 18 33694223 33694223 G T SLC39A6 Missense_Mutation p.D560E 0.41 tolerated(0.17) probably_damaging(1) TCGA-AA-3663-01 18 34205641 34205641 G A FHOD3 Silent p.S375S 0.42 TCGA-AA-3663-01 18 34801989 34801989 A G KIAA1328 Silent p.T511T 0.32 TCGA-AA-3663-01 18 3581940 3581940 G A DLGAP1 Missense_Mutation p.T633I 0.08 tolerated(0.29) benign(0.002) TCGA-AA-3663-01 18 43708238 43708238 A G HAUS1 3'UTR 0.31 TCGA-AA-3663-01 18 44122729 44122729 C A LOXHD1 Nonsense_Mutation p.G126* 0.34 TCGA-AA-3663-01 18 44560777 44560778 - C TCEB3B Frame_Shift_Ins p.Q287Afs*80 0.26 TCGA-AA-3663-01 18 45368319 45368319 C T SMAD2 Missense_Mutation p.R428K 0.29 deleterious(0) probably_damaging(0.97) TCGA-AA-3663-01 18 51813783 51813783 T A POLI Splice_Site p.X400_splice 0.31 TCGA-AA-3663-01 18 51820779 51820779 A G POLI Missense_Mutation p.K722R 0.43 tolerated(0.12) benign(0.049) TCGA-AA-3663-01 18 55355693 55355693 G A ATP8B1 Silent p.L423L 0.08 TCGA-AA-3663-01 18 56378163 56378163 T C MALT1 Silent p.D312D 0.09 TCGA-AA-3663-01 18 60646231 60646231 C T PHLPP1 Missense_Mutation p.A1574V 0.31 tolerated(0.1) benign(0.284) TCGA-AA-3663-01 18 65182711 65182712 - T DSEL 5'UTR 0.32 TCGA-AA-3663-01 18 67993531 67993531 T A SOCS6 3'UTR 0.40 TCGA-AA-3663-01 18 6997881 6997881 A G LAMA1 Missense_Mutation p.C1556R 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 18 71749177 71749177 A - FBXO15 Frame_Shift_Del p.F416Lfs*5 0.21 TCGA-AA-3663-01 18 72103718 72103718 T - FAM69C 3'UTR 0.43 TCGA-AA-3663-01 18 72187291 72187291 G T CNDP2 Missense_Mutation p.Q472H 0.28 tolerated(0.06) benign(0.002) TCGA-AA-3663-01 18 74091968 74091968 C T ZNF516 Missense_Mutation p.G701D 0.28 tolerated(0.53) benign(0.116) TCGA-AA-3663-01 18 747987 747987 C T YES1 Missense_Mutation p.A135T 0.37 tolerated(1) benign(0) TCGA-AA-3663-01 18 8244084 8244084 A G PTPRM Missense_Mutation p.M777V 0.24 tolerated(0.54) benign(0) TCGA-AA-3663-01 19 10088132 10088132 G - COL5A3 Frame_Shift_Del p.P1048Lfs*96 0.24 TCGA-AA-3663-01 19 1012511 1012511 C T TMEM259 Silent p.S223S 0.23 TCGA-AA-3663-01 19 10202910 10202910 G T C19orf66 Nonsense_Mutation p.E270* 0.26 TCGA-AA-3663-01 19 10217065 10217065 A C PPAN-P2RY11 5'Flank 0.37 TCGA-AA-3663-01 19 10224375 10224375 A C P2RY11 Missense_Mutation p.D29A 0.32 tolerated(0.59) benign(0.001) TCGA-AA-3663-01 19 10488968 10488968 C T TYK2 Missense_Mutation p.G39S 0.51 tolerated(0.1) benign(0.135) TCGA-AA-3663-01 19 10568603 10568603 A - PDE4A Frame_Shift_Del p.K310Nfs*29 0.33 TCGA-AA-3663-01 19 1058740 1058740 T C ABCA7 Missense_Mutation p.L1758P 0.43 tolerated(0.2) probably_damaging(0.914) TCGA-AA-3663-01 19 10939774 10939774 C T DNM2 Silent p.S707S 0.08 TCGA-AA-3663-01 19 11222254 11222254 C T LDLR Silent p.Y375Y 0.40 TCGA-AA-3663-01 19 11531528 11531528 T C CCDC151 Missense_Mutation p.K588R 0.24 deleterious(0.04) unknown(0) TCGA-AA-3663-01 19 11624675 11624675 T C ECSIT Missense_Mutation p.H153R 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 19 11657553 11657553 C A CNN1 Missense_Mutation p.H83Q 0.30 deleterious(0.02) possibly_damaging(0.793) TCGA-AA-3663-01 19 12155625 12155625 T - ZNF878 Frame_Shift_Del p.K197Nfs*16 0.23 TCGA-AA-3663-01 19 1234627 1234627 G A C19orf26 Silent p.S190S 0.30 TCGA-AA-3663-01 19 12637688 12637688 C T ZNF564 Missense_Mutation p.E412K 0.28 tolerated(0.17) possibly_damaging(0.692) TCGA-AA-3663-01 19 12996892 12996892 A C KLF1 Missense_Mutation p.L51R 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3663-01 19 13041557 13041557 C T FARSA Missense_Mutation p.E52K 0.42 tolerated(0.64) benign(0) TCGA-AA-3663-01 19 13210390 13210390 T C LYL1 Missense_Mutation p.M196V 0.26 tolerated(0.11) possibly_damaging(0.622) TCGA-AA-3663-01 19 13248341 13248341 G A NACC1 Missense_Mutation p.D426N 0.15 deleterious(0.03) benign(0.117) TCGA-AA-3663-01 19 13446675 13446675 G - CACNA1A Frame_Shift_Del p.L343Sfs*10 0.29 TCGA-AA-3663-01 19 13941211 13941211 C T ZSWIM4 Missense_Mutation p.P773S 0.47 tolerated(1) unknown(0) TCGA-AA-3663-01 19 1398993 1398994 - C GAMT Frame_Shift_Ins p.V165Rfs*26 0.28 TCGA-AA-3663-01 19 14024290 14024290 C T CC2D1A Missense_Mutation p.A196V 0.24 deleterious(0.01) possibly_damaging(0.611) TCGA-AA-3663-01 19 14024360 14024360 G A CC2D1A Silent p.A219A 0.38 TCGA-AA-3663-01 19 14141636 14141636 G - RLN3 Frame_Shift_Del p.R104Dfs*61 0.10 TCGA-AA-3663-01 19 14521090 14521090 T C DDX39A Missense_Mutation p.M224V 0.40 deleterious(0.03) possibly_damaging(0.531) TCGA-AA-3663-01 19 14817545 14817545 T A ZNF333 Silent p.P157P 0.16 TCGA-AA-3663-01 19 15223187 15223187 C T SYDE1 Missense_Mutation p.R537C 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-AA-3663-01 19 15226401 15226401 C T ILVBL Missense_Mutation p.V566M 0.52 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 19 15234187 15234187 G A ILVBL Silent p.S112S 0.41 TCGA-AA-3663-01 19 15367042 15367042 G T BRD4 Silent p.L528L 0.20 TCGA-AA-3663-01 19 15508400 15508400 G T AKAP8L Missense_Mutation p.L446I 0.39 deleterious(0.01) probably_damaging(0.973) TCGA-AA-3663-01 19 15572388 15572388 G - RASAL3 Frame_Shift_Del p.P120Lfs*89 0.32 TCGA-AA-3663-01 19 15918938 15918938 A - OR10H1 5'Flank 0.28 TCGA-AA-3663-01 19 16280473 16280473 A G CIB3 Missense_Mutation p.Y56H 0.37 tolerated(0.17) possibly_damaging(0.556) TCGA-AA-3663-01 19 16890161 16890161 C T NWD1 Silent p.T872T 0.47 TCGA-AA-3663-01 19 17081796 17081796 C T CPAMD8 Silent p.R753R 0.44 TCGA-AA-3663-01 19 17329204 17329204 A G USE1 Intron 0.06 TCGA-AA-3663-01 19 17361160 17361160 C T USHBP1 Silent p.E662E 0.21 TCGA-AA-3663-01 19 17397228 17397228 A G ANKLE1 Missense_Mutation p.Y572C 0.08 deleterious(0) probably_damaging(0.992) TCGA-AA-3663-01 19 17411868 17411868 A G ABHD8 Silent p.G186G 0.39 TCGA-AA-3663-01 19 17643117 17643117 C T FAM129C Missense_Mutation p.R109W 0.30 tolerated(0.19) benign(0.014) TCGA-AA-3663-01 19 17759754 17759754 G T UNC13A Silent p.A521A 0.34 TCGA-AA-3663-01 19 18119812 18119812 G A ARRDC2 Missense_Mutation p.G125D 0.45 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 19 1819990 1819990 C T REXO1 Missense_Mutation p.V865M 0.36 deleterious(0) probably_damaging(0.948) TCGA-AA-3663-01 19 18239256 18239256 T C MAST3 Silent p.P346P 0.35 TCGA-AA-3663-01 19 18887993 18887993 C - CRTC1 Frame_Shift_Del p.S588Afs*6 0.44 TCGA-AA-3663-01 19 19015631 19015631 G A COPE Silent p.D176D 0.37 TCGA-AA-3663-01 19 19040423 19040423 C T HOMER3 Silent p.A305A 0.34 TCGA-AA-3663-01 19 19413118 19413118 C T SUGP1 Silent p.V281V 0.09 TCGA-AA-3663-01 19 21216935 21216935 G A ZNF430 Silent p.E89E 0.31 TCGA-AA-3663-01 19 21561199 21561199 A C ZNF738 3'UTR 0.36 TCGA-AA-3663-01 19 21910606 21910606 T C ZNF100 Missense_Mutation p.I170V 0.32 deleterious(0.01) benign(0.009) TCGA-AA-3663-01 19 22193621 22193621 C T ZNF208 5'UTR 0.07 TCGA-AA-3663-01 19 2275625 2275625 C A C19orf35 3'UTR 0.35 TCGA-AA-3663-01 19 2278894 2278894 C A C19orf35 Missense_Mutation p.A101S 0.27 tolerated(0.28) benign(0.38) TCGA-AA-3663-01 19 23543692 23543692 G A ZNF91 Nonsense_Mutation p.R697* 0.06 TCGA-AA-3663-01 19 2430789 2430789 T G LMNB2 3'UTR 0.39 TCGA-AA-3663-01 19 2520710 2520710 C T GNG7 5'UTR 0.38 TCGA-AA-3663-01 19 2732781 2732781 C T SLC39A3 Missense_Mutation p.V305I 0.38 tolerated(0.2) benign(0.006) TCGA-AA-3663-01 19 30054794 30054794 C T VSTM2B Missense_Mutation p.L271F 0.33 tolerated(0.46) benign(0.184) TCGA-AA-3663-01 19 3005844 3005844 G A TLE2 Silent p.A541A 0.50 TCGA-AA-3663-01 19 30500141 30500146 GATGAC - URI1 In_Frame_Del p.D310_D311del 0.23 TCGA-AA-3663-01 19 33168075 33168075 G A RGS9BP 3'UTR 0.40 TCGA-AA-3663-01 19 33168810 33168810 T G RGS9BP 3'UTR 0.37 TCGA-AA-3663-01 19 33792374 33792374 T G CEBPA Missense_Mutation p.E316A 0.10 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 19 33904510 33904510 G A PEPD Silent p.R237R 0.48 TCGA-AA-3663-01 19 34303615 34303615 A G KCTD15 Intron 0.31 TCGA-AA-3663-01 19 35230491 35230491 T C ZNF181 Missense_Mutation p.M65T 0.40 deleterious(0.03) benign(0.002) TCGA-AA-3663-01 19 36042454 36042454 T C ATP4A Missense_Mutation p.Y927C 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-AA-3663-01 19 36042469 36042469 C T ATP4A Missense_Mutation p.R922H 0.50 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 19 36049303 36049304 TT - ATP4A Frame_Shift_Del p.K487Sfs*86 0.30 TCGA-AA-3663-01 19 36169054 36169054 A G UPK1A 3'UTR 0.62 TCGA-AA-3663-01 19 36218093 36218093 A G KMT2B Missense_Mutation p.D1347G 0.39 probably_damaging(0.989) TCGA-AA-3663-01 19 36222925 36222925 G A KMT2B Missense_Mutation p.A1852T 0.31 benign(0.004) TCGA-AA-3663-01 19 36227675 36227675 G A KMT2B Missense_Mutation p.R2415H 0.10 possibly_damaging(0.728) TCGA-AA-3663-01 19 36350525 36350525 G C KIRREL2 Missense_Mutation p.S222T 0.30 tolerated(0.19) benign(0.036) TCGA-AA-3663-01 19 36353830 36353830 C A KIRREL2 Silent p.A539A 0.07 TCGA-AA-3663-01 19 36357321 36357321 C - KIRREL2 Frame_Shift_Del p.T688Lfs*43 0.34 TCGA-AA-3663-01 19 37369338 37369338 A - ZNF345 3'UTR 0.29 TCGA-AA-3663-01 19 3746874 3746874 G T TJP3 Missense_Mutation p.Q783H 0.46 deleterious(0.01) benign(0.346) TCGA-AA-3663-01 19 37619480 37619480 A C ZNF420 Missense_Mutation p.K529N 0.09 deleterious(0.01) possibly_damaging(0.758) TCGA-AA-3663-01 19 3781623 3781623 C A MATK Nonsense_Mutation p.G243* 0.31 TCGA-AA-3663-01 19 3781627 3781627 C A MATK Missense_Mutation p.Q241H 0.32 tolerated(0.12) possibly_damaging(0.516) TCGA-AA-3663-01 19 37835554 37835554 T G HKR1 5'UTR 0.18 TCGA-AA-3663-01 19 3784189 3784189 G A MATK Silent p.L100L 0.24 TCGA-AA-3663-01 19 37879655 37879655 A G ZNF527 Missense_Mutation p.K235R 0.15 tolerated(0.5) benign(0.007) TCGA-AA-3663-01 19 38028448 38028448 A C ZNF793 Silent p.S296S 0.10 TCGA-AA-3663-01 19 38028503 38028503 G A ZNF793 Missense_Mutation p.E315K 0.28 tolerated(0.39) benign(0.02) TCGA-AA-3663-01 19 38126498 38126498 A G ZFP30 Missense_Mutation p.L315P 0.24 tolerated(0.23) possibly_damaging(0.73) TCGA-AA-3663-01 19 38159989 38159989 A - ZNF781 3'UTR 0.20 TCGA-AA-3663-01 19 3816769 3816769 C T ZFR2 Missense_Mutation p.R669H 0.35 deleterious(0.03) possibly_damaging(0.745) TCGA-AA-3663-01 19 38377927 38377927 T A WDR87 Missense_Mutation p.K2089N 0.38 possibly_damaging(0.505) TCGA-AA-3663-01 19 38383422 38383422 G A WDR87 Missense_Mutation p.P935L 0.37 probably_damaging(0.999) TCGA-AA-3663-01 19 38610394 38610394 G A SIPA1L3 Missense_Mutation p.G914R 0.47 tolerated(1) benign(0.006) TCGA-AA-3663-01 19 38939122 38939122 G A RYR1 Missense_Mutation p.A310T 0.36 benign(0.262) TCGA-AA-3663-01 19 38996522 38996522 C T RYR1 Missense_Mutation p.A2826V 0.08 benign(0.06) TCGA-AA-3663-01 19 3905477 3905477 A G ATCAY Missense_Mutation p.K61R 0.09 tolerated(0.29) benign(0.009) TCGA-AA-3663-01 19 3907906 3907906 T C ATCAY Missense_Mutation p.V178A 0.07 deleterious(0) possibly_damaging(0.791) TCGA-AA-3663-01 19 39330958 39330959 - G HNRNPL Frame_Shift_Ins p.P338Tfs*56 0.22 TCGA-AA-3663-01 19 39905656 39905656 C - PLEKHG2 Frame_Shift_Del p.R47Efs*9 0.32 TCGA-AA-3663-01 19 39907053 39907053 G T PLEKHG2 Missense_Mutation p.R182M 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3663-01 19 39977066 39977066 C - TIMM50 Frame_Shift_Del p.H314Mfs*21 0.30 TCGA-AA-3663-01 19 40316434 40316434 G A DYRK1B Missense_Mutation p.P604L 0.34 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-AA-3663-01 19 40392671 40392671 G A FCGBP Silent p.G2611G 0.20 TCGA-AA-3663-01 19 40421416 40421416 G A FCGBP Silent p.C835C 0.37 TCGA-AA-3663-01 19 40520806 40520806 T C ZNF546 Silent p.H543H 0.40 TCGA-AA-3663-01 19 40711190 40711190 G A MAP3K10 Missense_Mutation p.R392Q 0.34 deleterious(0) possibly_damaging(0.617) TCGA-AA-3663-01 19 41135352 41135352 C T LTBP4 Missense_Mutation p.A1590V 0.39 deleterious(0.02) benign(0.08) TCGA-AA-3663-01 19 41351877 41351877 C T CYP2A6 Silent p.K319K 0.46 TCGA-AA-3663-01 19 42191096 42191096 C T CEACAM7 Missense_Mutation p.V41M 0.37 tolerated(0.13) benign(0.015) TCGA-AA-3663-01 19 42703608 42703608 G A DEDD2 Silent p.R321R 0.40 TCGA-AA-3663-01 19 42729772 42729772 G T ZNF526 Missense_Mutation p.R406L 0.46 deleterious(0.05) probably_damaging(0.959) TCGA-AA-3663-01 19 42847719 42847719 G A MEGF8 Missense_Mutation p.R535Q 0.43 tolerated(0.33) benign(0.078) TCGA-AA-3663-01 19 42860345 42860345 C T MEGF8 Silent p.A1434A 0.28 TCGA-AA-3663-01 19 42930910 42930910 A G LIPE Missense_Mutation p.L131S 0.44 tolerated_low_confidence(0.09) benign(0.002) TCGA-AA-3663-01 19 43359830 43359830 C A PSG10P 5'Flank 0.34 TCGA-AA-3663-01 19 43371802 43371802 T C PSG1 3'UTR 0.23 TCGA-AA-3663-01 19 44571013 44571013 T C ZNF223 Silent p.Y344Y 0.30 TCGA-AA-3663-01 19 45153205 45153205 C T PVR Silent p.G184G 0.21 TCGA-AA-3663-01 19 4529279 4529279 C - PLIN5 Intron 0.29 TCGA-AA-3663-01 19 46879757 46879757 A G PPP5C Missense_Mutation p.T187A 0.39 deleterious(0) possibly_damaging(0.655) TCGA-AA-3663-01 19 46916212 46916212 C T CCDC8 5'UTR 0.11 TCGA-AA-3663-01 19 4702683 4702683 G A DPP9 Missense_Mutation p.T272I 0.10 deleterious(0) probably_damaging(0.962) TCGA-AA-3663-01 19 47342048 47342048 G A AP2S1 Silent p.N92N 0.21 TCGA-AA-3663-01 19 47424760 47424760 A - ARHGAP35 Frame_Shift_Del p.K945Rfs*3 0.25 TCGA-AA-3663-01 19 47778959 47778959 T C PRR24 3'UTR 0.26 TCGA-AA-3663-01 19 47870410 47870410 T C DHX34 Missense_Mutation p.I589T 0.07 deleterious(0.04) benign(0.21) TCGA-AA-3663-01 19 48250281 48250281 G T GLTSCR2 Missense_Mutation p.K94N 0.24 tolerated(0.07) benign(0.314) TCGA-AA-3663-01 19 48337721 48337721 G A TPRX2P Silent p.P7P 0.38 TCGA-AA-3663-01 19 48822030 48822030 A G CCDC114 5'UTR 0.37 TCGA-AA-3663-01 19 49208373 49208373 T C FUT2 3'UTR 0.29 TCGA-AA-3663-01 19 49514547 49514547 C T RUVBL2 Silent p.A327A 0.30 TCGA-AA-3663-01 19 49548486 49548486 C - CGB5 Frame_Shift_Del p.S147Afs*? 0.35 TCGA-AA-3663-01 19 49703613 49703613 T - TRPM4 Frame_Shift_Del p.F902Sfs*22 0.26 TCGA-AA-3663-01 19 49812218 49812218 G A SLC6A16 Silent p.L382L 0.43 TCGA-AA-3663-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.31 TCGA-AA-3663-01 19 50548848 50548848 T - ZNF473 Frame_Shift_Del p.F384Lfs*35 0.08 TCGA-AA-3663-01 19 50752374 50752374 T C MYH14 Missense_Mutation p.I487T 0.43 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 19 51322455 51322455 A T KLK1 Missense_Mutation p.S262T 0.35 tolerated(0.08) benign(0.002) TCGA-AA-3663-01 19 51525940 51525940 C - KLK11 Frame_Shift_Del p.G237Afs*43 0.29 TCGA-AA-3663-01 19 51534059 51534059 C - KLK12 Frame_Shift_Del p.Q193Rfs*? 0.43 TCGA-AA-3663-01 19 51629063 51629063 C T SIGLEC9 Missense_Mutation p.L211F 0.32 deleterious(0.02) possibly_damaging(0.63) TCGA-AA-3663-01 19 51883315 51883315 G A LIM2 3'UTR 0.35 TCGA-AA-3663-01 19 52272447 52272447 A T FPR2 Missense_Mutation p.N179I 0.41 tolerated(0.06) benign(0.141) TCGA-AA-3663-01 19 52394118 52394118 T C ZNF649 Missense_Mutation p.H424R 0.30 deleterious(0.01) probably_damaging(0.966) TCGA-AA-3663-01 19 52399735 52399735 T C ZNF649 Silent p.P76P 0.32 TCGA-AA-3663-01 19 52659362 52659362 C T ZNF836 Missense_Mutation p.R525H 0.43 deleterious(0) possibly_damaging(0.703) TCGA-AA-3663-01 19 52723000 52723000 T C PPP2R1A Silent p.I395I 0.21 TCGA-AA-3663-01 19 53086502 53086502 T C ZNF701 Missense_Mutation p.L463P 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 19 53268825 53268825 G A ZNF600 3'UTR 0.07 TCGA-AA-3663-01 19 53432183 53432183 T C ZNF321P Silent p.T225T 0.38 TCGA-AA-3663-01 19 53886877 53886877 G A ZNF525 3'UTR 0.28 TCGA-AA-3663-01 19 54759229 54759229 C - LILRB5 Frame_Shift_Del p.G291Afs*25 0.27 TCGA-AA-3663-01 19 55019350 55019351 - C LAIR2 Frame_Shift_Ins p.G108Wfs*4 0.12 TCGA-AA-3663-01 19 55147595 55147595 G A AC009892.10 Intron 0.07 TCGA-AA-3663-01 19 55686627 55686627 G A SYT5 Silent p.I207I 0.29 TCGA-AA-3663-01 19 55795861 55795861 C - BRSK1 Frame_Shift_Del p.H19Tfs*47 0.35 TCGA-AA-3663-01 19 56203190 56203190 G C EPN1 Missense_Mutation p.G364A 0.35 tolerated(0.58) possibly_damaging(0.899) TCGA-AA-3663-01 19 56241233 56241233 G A NLRP9 Missense_Mutation p.A653V 0.38 tolerated(0.15) benign(0.022) TCGA-AA-3663-01 19 5661536 5661536 C T SAFB Missense_Mutation p.R624C 0.07 tolerated(0.06) unknown(0) TCGA-AA-3663-01 19 5667115 5667115 G - SAFB Frame_Shift_Del p.G800Afs*8 0.30 TCGA-AA-3663-01 19 56953251 56953251 T C ZNF667 Silent p.S371S 0.42 TCGA-AA-3663-01 19 57133429 57133429 C A ZNF71 Silent p.I258I 0.36 TCGA-AA-3663-01 19 57286128 57286128 G A ZIM2 Silent p.G504G 0.30 TCGA-AA-3663-01 19 57640034 57640034 T C USP29 5'UTR 0.08 TCGA-AA-3663-01 19 57746647 57746647 G - AURKC Frame_Shift_Del p.A266Pfs*4 0.22 TCGA-AA-3663-01 19 57773556 57773556 C A CTC-444N24.8 RNA 0.36 TCGA-AA-3663-01 19 5783126 5783126 C G PRR22 Missense_Mutation p.A378P 0.32 tolerated(0.18) possibly_damaging(0.837) TCGA-AA-3663-01 19 58579649 58579649 G A ZNF135 Silent p.T623T 0.39 TCGA-AA-3663-01 19 58723010 58723010 C T ZNF274 Missense_Mutation p.R312C 0.42 deleterious(0.03) possibly_damaging(0.458) TCGA-AA-3663-01 19 58772268 58772268 C T ZNF544 Missense_Mutation p.A99V 0.44 tolerated(0.49) benign(0.157) TCGA-AA-3663-01 19 58863869 58863869 G - A1BG Frame_Shift_Del p.G132Afs*2 0.27 TCGA-AA-3663-01 19 58906065 58906065 A G RPS5 Missense_Mutation p.Y188C 0.40 deleterious(0) probably_damaging(0.983) TCGA-AA-3663-01 19 58928811 58928811 A G ZNF584 Missense_Mutation p.Y309C 0.47 tolerated(0.12) probably_damaging(0.998) TCGA-AA-3663-01 19 58965730 58965730 G - ZNF324B Intron 0.18 TCGA-AA-3663-01 19 6040090 6040090 C - RFX2 Frame_Shift_Del p.S142Afs*72 0.39 TCGA-AA-3663-01 19 630125 630125 C T POLRMT Silent p.S79S 0.44 TCGA-AA-3663-01 19 6381043 6381043 G A GTF2F1 Missense_Mutation p.T368M 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3663-01 19 7142982 7142982 C A INSR Missense_Mutation p.R796M 0.31 tolerated(0.12) benign(0.039) TCGA-AA-3663-01 19 7534888 7534888 G A ARHGEF18 Missense_Mutation p.G1108S 0.41 tolerated(1) benign(0.001) TCGA-AA-3663-01 19 7692181 7692181 C T XAB2 Missense_Mutation p.R157H 0.39 tolerated(0.11) benign(0.015) TCGA-AA-3663-01 19 7828345 7828345 G A CLEC4M Missense_Mutation p.G38D 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3663-01 19 7831615 7831615 G T CLEC4M Missense_Mutation p.Q286H 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 19 7987519 7987519 C - SNAPC2 Frame_Shift_Del p.P294Qfs*11 0.35 TCGA-AA-3663-01 19 805080 805080 G A PTBP1 Missense_Mutation p.S262N 0.40 tolerated(0.77) benign(0.004) TCGA-AA-3663-01 19 852391 852391 G - ELANE Frame_Shift_Del 0.30 TCGA-AA-3663-01 19 8587343 8587343 G A MYO1F Silent p.C1046C 0.39 TCGA-AA-3663-01 19 8619421 8619421 A G MYO1F Missense_Mutation p.L89P 0.22 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 19 900138 900138 C T R3HDM4 Missense_Mutation p.A162T 0.42 deleterious(0.04) benign(0.014) TCGA-AA-3663-01 19 9065386 9065386 T G MUC16 Missense_Mutation p.T7354P 0.35 unknown(0) TCGA-AA-3663-01 19 9069139 9069139 C T MUC16 Missense_Mutation p.D6103N 0.28 unknown(0) TCGA-AA-3663-01 19 9080503 9080503 T C MUC16 Silent p.Q3176Q 0.27 TCGA-AA-3663-01 19 9080504 9080504 T A MUC16 Missense_Mutation p.Q3176L 0.27 unknown(0) TCGA-AA-3663-01 19 9801738 9801738 G T ZNF812 Silent p.T147T 0.34 TCGA-AA-3663-01 1 100111841 100111841 T A PALMD 5'UTR 0.38 TCGA-AA-3663-01 1 100345592 100345592 C A AGL Silent p.S575S 0.30 TCGA-AA-3663-01 1 100588833 100588833 G A SASS6 Missense_Mutation p.R47C 0.37 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 1 10166432 10166432 G A UBE4B Silent p.R329R 0.35 TCGA-AA-3663-01 1 10231210 10231211 - T UBE4B Frame_Shift_Ins p.L1117Ffs*8 0.25 TCGA-AA-3663-01 1 10342534 10342534 T C KIF1B Silent p.S413S 0.25 TCGA-AA-3663-01 1 107601242 107601242 A - PRMT6 3'UTR 0.23 TCGA-AA-3663-01 1 109461273 109461273 A G GPSM2 Silent p.K434K 0.25 TCGA-AA-3663-01 1 109650638 109650638 T C C1orf194 Missense_Mutation p.T23A 0.08 tolerated(0.12) benign(0.031) TCGA-AA-3663-01 1 109779133 109779133 G T SARS Missense_Mutation p.R407L 0.07 tolerated(0.26) benign(0.003) TCGA-AA-3663-01 1 109824567 109824567 T A PSRC1 Missense_Mutation p.S65C 0.12 tolerated(0.11) probably_damaging(1) TCGA-AA-3663-01 1 110170772 110170772 C A AMPD2 Missense_Mutation p.A437E 0.44 tolerated(0.13) possibly_damaging(0.627) TCGA-AA-3663-01 1 110172868 110172868 A G AMPD2 Missense_Mutation p.Q720R 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 1 110258591 110258591 C A GSTM5 Intron 0.13 TCGA-AA-3663-01 1 110656226 110656226 G A UBL4B 3'UTR 0.29 TCGA-AA-3663-01 1 11105508 11105508 G A MASP2 Silent p.C167C 0.41 TCGA-AA-3663-01 1 11151109 11151110 - T EXOSC10 Frame_Shift_Ins p.I202Nfs*17 0.10 TCGA-AA-3663-01 1 111703810 111703810 A C CEPT1 Missense_Mutation p.Q174P 0.05 deleterious(0.03) probably_damaging(0.993) TCGA-AA-3663-01 1 111889540 111889540 G A PIFO Missense_Mutation p.D10N 0.35 tolerated(0.37) benign(0.001) TCGA-AA-3663-01 1 11189841 11189841 G A MTOR Missense_Mutation p.R1890C 0.39 deleterious(0) probably_damaging(0.938) TCGA-AA-3663-01 1 111959047 111959047 C - OVGP1 Frame_Shift_Del p.A352Pfs*27 0.30 TCGA-AA-3663-01 1 111983960 111983960 C T WDR77 Silent p.P307P 0.37 TCGA-AA-3663-01 1 112019956 112019957 - A C1orf162 Frame_Shift_Ins p.H39Tfs*99 0.30 TCGA-AA-3663-01 1 11269439 11269439 G T MTOR Missense_Mutation p.A1244E 0.29 tolerated(1) benign(0.001) TCGA-AA-3663-01 1 11313987 11313987 G A MTOR Missense_Mutation p.A250V 0.37 tolerated(0.68) benign(0.051) TCGA-AA-3663-01 1 113471890 113471890 G - SLC16A1 Frame_Shift_Del p.P14Qfs*10 0.40 TCGA-AA-3663-01 1 115215848 115215848 C T AMPD1 Missense_Mutation p.A744T 0.25 tolerated(0.2) benign(0.001) TCGA-AA-3663-01 1 11596599 11596599 G A PTCHD2 Silent p.A1345A 0.45 TCGA-AA-3663-01 1 11596726 11596726 G T PTCHD2 Missense_Mutation p.A1388S 0.42 tolerated(1) benign(0) TCGA-AA-3663-01 1 116383032 116383032 G A NHLH2 5'UTR 0.24 TCGA-AA-3663-01 1 116946544 116946546 TCA - ATP1A1 In_Frame_Del p.I998del 0.37 TCGA-AA-3663-01 1 1169539 1169539 C A B3GALT6 3'UTR 0.43 TCGA-AA-3663-01 1 117078679 117078679 T - CD58 Frame_Shift_Del p.N179Mfs*24 0.26 TCGA-AA-3663-01 1 11708823 11708823 C - FBXO2 Frame_Shift_Del p.Q274Rfs*14 0.26 TCGA-AA-3663-01 1 117146466 117146466 G A IGSF3 Silent p.T488T 0.39 TCGA-AA-3663-01 1 11728803 11728803 G A FBXO6 Missense_Mutation p.A30T 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3663-01 1 117484351 117484351 C T PTGFRN Missense_Mutation p.R22C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 1 118548139 118548139 A T SPAG17 Nonsense_Mutation p.Y1558* 0.39 TCGA-AA-3663-01 1 119427594 119427595 - G TBX15 Frame_Shift_Ins p.T418Hfs*4 0.31 TCGA-AA-3663-01 1 120057375 120057375 C T HSD3B1 3'UTR 0.45 TCGA-AA-3663-01 1 12018653 12018653 C T PLOD1 Silent p.L308L 0.42 TCGA-AA-3663-01 1 120529622 120529622 C T NOTCH2 Missense_Mutation p.V279I 0.31 tolerated(0.11) probably_damaging(0.997) TCGA-AA-3663-01 1 120927133 120927133 G A FCGR1B 3'UTR 0.35 TCGA-AA-3663-01 1 13718445 13718445 C A PRAMEF17 Missense_Mutation p.A303D 0.37 deleterious(0) possibly_damaging(0.869) TCGA-AA-3663-01 1 13942571 13942571 G T PDPN 3'UTR 0.35 TCGA-AA-3663-01 1 1404147 1404147 G T ATAD3C 3'UTR 0.31 TCGA-AA-3663-01 1 14107771 14107771 C T PRDM2 Missense_Mutation p.P1161S 0.11 unknown(0) TCGA-AA-3663-01 1 1420452 1420452 C T ATAD3B Silent p.A269A 0.43 TCGA-AA-3663-01 1 144814763 144814763 G A NBPF9 Missense_Mutation p.R133H 0.31 tolerated(0.6) possibly_damaging(0.579) TCGA-AA-3663-01 1 144868110 144868110 A G PDE4DIP Missense_Mutation p.S1777P 0.21 tolerated(0.08) benign(0.007) TCGA-AA-3663-01 1 144881506 144881506 G A PDE4DIP Silent p.L1230L 0.21 TCGA-AA-3663-01 1 147091819 147091819 C T BCL9 Missense_Mutation p.R620C 0.34 deleterious(0) probably_damaging(0.988) TCGA-AA-3663-01 1 149906189 149906189 A G MTMR11 Missense_Mutation p.I193T 0.30 tolerated(0.55) benign(0.008) TCGA-AA-3663-01 1 149908135 149908135 G T MTMR11 Intron 0.08 TCGA-AA-3663-01 1 150049058 150049058 G A VPS45 Missense_Mutation p.C145Y 0.29 tolerated(1) benign(0.002) TCGA-AA-3663-01 1 150230453 150230453 C T CA14 5'UTR 0.39 TCGA-AA-3663-01 1 150445463 150445463 A G RPRD2 Missense_Mutation p.R1347G 0.17 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-AA-3663-01 1 150471104 150471104 G A TARS2 Silent p.Q455Q 0.31 TCGA-AA-3663-01 1 150923399 150923399 C T SETDB1 Silent p.I682I 0.39 TCGA-AA-3663-01 1 150936129 150936129 G A SETDB1 Missense_Mutation p.R1194H 0.39 tolerated(0.34) benign(0.019) TCGA-AA-3663-01 1 151258839 151258839 T C ZNF687 Silent p.N24N 0.26 TCGA-AA-3663-01 1 151261168 151261168 C T ZNF687 Silent p.R760R 0.24 TCGA-AA-3663-01 1 151824859 151824859 A G THEM5 Missense_Mutation p.L67P 0.06 tolerated(0.1) probably_damaging(0.909) TCGA-AA-3663-01 1 152079851 152079851 G A TCHH 3'UTR 0.08 TCGA-AA-3663-01 1 152128587 152128587 G A RPTN Missense_Mutation p.H330Y 0.40 tolerated(0.17) possibly_damaging(0.806) TCGA-AA-3663-01 1 152276724 152276724 C A FLG Missense_Mutation p.Q3546H 0.11 unknown(0) TCGA-AA-3663-01 1 152328587 152328587 A G FLG2 Missense_Mutation p.Y559H 0.10 unknown(0) TCGA-AA-3663-01 1 152484233 152484233 C T LCE5A Missense_Mutation p.R75C 0.33 tolerated_low_confidence(0.17) unknown(0) TCGA-AA-3663-01 1 152659419 152659419 C - LCE2B Frame_Shift_Del p.Q35Sfs*39 0.17 TCGA-AA-3663-01 1 152785438 152785438 C - LCE1B 3'UTR 0.28 TCGA-AA-3663-01 1 153745725 153745725 A G INTS3 Silent p.A1036A 0.09 TCGA-AA-3663-01 1 153746472 153746472 T G INTS3 3'UTR 0.22 TCGA-AA-3663-01 1 153916691 153916691 C T DENND4B Missense_Mutation p.A54T 0.09 tolerated(0.25) benign(0.114) TCGA-AA-3663-01 1 154316925 154316925 A G ATP8B2 Missense_Mutation p.E730G 0.43 tolerated(0.22) possibly_damaging(0.678) TCGA-AA-3663-01 1 154461564 154461564 C A SHE Missense_Mutation p.W329C 0.40 deleterious(0) probably_damaging(0.954) TCGA-AA-3663-01 1 154698473 154698473 G A KCNN3 Silent p.A540A 0.32 TCGA-AA-3663-01 1 154987403 154987403 T A ZBTB7B Nonsense_Mutation p.C123* 0.40 TCGA-AA-3663-01 1 155020273 155020273 C T DCST1 Silent p.P541P 0.09 TCGA-AA-3663-01 1 155029742 155029742 C T ADAM15 Silent p.C409C 0.37 TCGA-AA-3663-01 1 155032427 155032427 C T ADAM15 Missense_Mutation p.P682L 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 1 155171302 155171302 C T THBS3 Missense_Mutation p.C412Y 0.40 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 1 155221333 155221333 G - FAM189B Frame_Shift_Del p.P285Lfs*36 0.30 TCGA-AA-3663-01 1 155264127 155264127 C - PKLR Frame_Shift_Del p.D339Tfs*2 0.29 TCGA-AA-3663-01 1 155295671 155295671 C T RUSC1 Silent p.L611L 0.36 TCGA-AA-3663-01 1 155491150 155491150 C T ASH1L Missense_Mutation p.R54Q 0.08 tolerated_low_confidence(0.12) possibly_damaging(0.557) TCGA-AA-3663-01 1 155931976 155931976 A G ARHGEF2 Missense_Mutation p.V380A 0.36 deleterious(0) probably_damaging(0.927) TCGA-AA-3663-01 1 156018326 156018326 A G UBQLN4 Missense_Mutation p.I289T 0.10 deleterious(0) probably_damaging(0.917) TCGA-AA-3663-01 1 156268701 156268701 A G VHLL Missense_Mutation p.F94L 0.24 tolerated(0.08) possibly_damaging(0.542) TCGA-AA-3663-01 1 15656049 15656049 T - FHAD1 Frame_Shift_Del p.S247Lfs*12 0.27 TCGA-AA-3663-01 1 156642347 156642347 T G NES Missense_Mutation p.T545P 0.43 deleterious(0) possibly_damaging(0.828) TCGA-AA-3663-01 1 156715104 156715104 A - HDGF Frame_Shift_Del p.F66Sfs*105 0.42 TCGA-AA-3663-01 1 156875202 156875202 G - PEAR1 Frame_Shift_Del p.F100Sfs*277 0.17 TCGA-AA-3663-01 1 156897308 156897308 G A LRRC71 Missense_Mutation p.R228Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 1 157666960 157666960 T - FCRL3 Frame_Shift_Del p.R272Gfs*3 0.29 TCGA-AA-3663-01 1 15809840 15809840 C T CELA2B Silent p.G146G 0.31 TCGA-AA-3663-01 1 158259878 158259878 G A CD1C Silent p.L8L 0.11 TCGA-AA-3663-01 1 158325800 158325800 G A CD1E Missense_Mutation p.R270Q 0.37 tolerated(0.44) benign(0.026) TCGA-AA-3663-01 1 158533299 158533300 AA - OR6P1 Frame_Shift_Del p.F32Cfs*59 0.38 TCGA-AA-3663-01 1 158632704 158632704 G A SPTA1 Missense_Mutation p.A751V 0.27 tolerated(0.29) benign(0.023) TCGA-AA-3663-01 1 158653273 158653273 T C SPTA1 Missense_Mutation p.K93R 0.37 tolerated(0.07) probably_damaging(0.999) TCGA-AA-3663-01 1 158669830 158669830 C T OR6K2 Missense_Mutation p.A205T 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 1 158912054 158912054 A G PYHIN1 Silent p.V289V 0.43 TCGA-AA-3663-01 1 15893604 15893604 A - DNAJC16 Frame_Shift_Del p.G599Afs*5 0.27 TCGA-AA-3663-01 1 159897147 159897147 G T IGSF9 Silent p.A1176A 0.09 TCGA-AA-3663-01 1 160105723 160105723 C T ATP1A2 Silent p.A793A 0.27 TCGA-AA-3663-01 1 160125026 160125026 T C ATP1A4 Silent p.P133P 0.11 TCGA-AA-3663-01 1 16065124 16065125 - G SLC25A34 Frame_Shift_Ins p.M214Hfs*110 0.30 TCGA-AA-3663-01 1 16101280 16101280 C T FBLIM1 Silent p.D293D 0.36 TCGA-AA-3663-01 1 161017623 161017623 C T ARHGAP30 Missense_Mutation p.R1063Q 0.39 deleterious_low_confidence(0.04) benign(0.014) TCGA-AA-3663-01 1 161167945 161167946 - C ADAMTS4 Frame_Shift_Ins p.A158Gfs*2 0.09 TCGA-AA-3663-01 1 161719662 161719662 C T DUSP12 Missense_Mutation p.A24V 0.43 tolerated_low_confidence(0.12) benign(0.004) TCGA-AA-3663-01 1 163038964 163038964 T C RGS4 Intron 0.25 TCGA-AA-3663-01 1 16353271 16353271 G A CLCNKA Splice_Site p.X219_splice 0.40 TCGA-AA-3663-01 1 16362868 16386126 1:16362868-16386126 - CLCNKB large deletion 0.21 TCGA-AA-3663-01 1 165414198 165414198 G T RXRG 5'UTR 0.10 TCGA-AA-3663-01 1 165721337 165721337 A G TMCO1 Splice_Site p.X159_splice 0.23 TCGA-AA-3663-01 1 1670385 1670385 G A SLC35E2 Missense_Mutation p.T145M 0.20 deleterious(0.03) possibly_damaging(0.88) TCGA-AA-3663-01 1 16725319 16725319 T C SPATA21 Splice_Site p.X451_splice 0.08 TCGA-AA-3663-01 1 167823671 167823671 T - ADCY10 Frame_Shift_Del p.N743Tfs*33 0.24 TCGA-AA-3663-01 1 16901685 16901685 A G NBPF1 Missense_Mutation p.V720A 0.47 tolerated(0.54) benign(0.051) TCGA-AA-3663-01 1 169446809 169446809 A - SLC19A2 Frame_Shift_Del p.Y131Mfs*45 0.32 TCGA-AA-3663-01 1 169821919 169821919 T - SCYL3 3'UTR 0.39 TCGA-AA-3663-01 1 17023002 17023002 T G ESPNP RNA 0.12 TCGA-AA-3663-01 1 171086622 171086622 A G FMO3 3'UTR 0.27 TCGA-AA-3663-01 1 171173005 171173005 T - FMO2 Frame_Shift_Del p.F211Lfs*11 0.29 TCGA-AA-3663-01 1 171535910 171535910 A C PRRC2C Silent p.A2160A 0.43 TCGA-AA-3663-01 1 17292587 17292587 C T CROCC Nonsense_Mutation p.Q1557* 0.44 TCGA-AA-3663-01 1 17331984 17331984 G A ATP13A2 Missense_Mutation p.A58V 0.27 tolerated(0.12) possibly_damaging(0.679) TCGA-AA-3663-01 1 17431540 17431540 C T PADI2 Missense_Mutation p.A37T 0.33 tolerated(0.41) benign(0.431) TCGA-AA-3663-01 1 174987596 174987596 A G MRPS14 Silent p.I54I 0.39 TCGA-AA-3663-01 1 175372615 175372616 - A TNR Frame_Shift_Ins p.V213Cfs*10 0.29 TCGA-AA-3663-01 1 17550894 17550894 G T PADI1 Missense_Mutation p.G127C 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 1 177250249 177250249 T C BRINP2 Missense_Mutation p.L646P 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 1 17735612 17735612 G A RCC2 Missense_Mutation p.P515S 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3663-01 1 178820093 178820093 C T ANGPTL1 3'UTR 0.28 TCGA-AA-3663-01 1 179090803 179090803 C - ABL2 Frame_Shift_Del p.G296Afs*21 0.23 TCGA-AA-3663-01 1 180053261 180053261 G T CEP350 Missense_Mutation p.R2078M 0.38 probably_damaging(0.999) TCGA-AA-3663-01 1 182491180 182491180 C T RGSL1 Missense_Mutation p.R623C 0.39 tolerated(0.18) benign(0.326) TCGA-AA-3663-01 1 183212405 183212405 A G LAMC2 Missense_Mutation p.Q1151R 0.28 tolerated(0.89) benign(0) TCGA-AA-3663-01 1 184853786 184853786 G A FAM129A Silent p.C194C 0.35 TCGA-AA-3663-01 1 185897792 185897792 C T HMCN1 Silent p.D515D 0.38 TCGA-AA-3663-01 1 186280588 186280588 G A PRG4 Missense_Mutation p.R1218H 0.37 unknown(0) TCGA-AA-3663-01 1 19201895 19201895 C - ALDH4A1 Frame_Shift_Del p.A481Qfs*17 0.31 TCGA-AA-3663-01 1 1922384 1922384 G A C1orf222 Silent p.D4D 0.38 TCGA-AA-3663-01 1 193028805 193028805 C T UCHL5 5'Flank 0.07 TCGA-AA-3663-01 1 193149415 193149415 T - B3GALT2 3'UTR 0.14 TCGA-AA-3663-01 1 19503969 19503969 A G UBR4 Missense_Mutation p.Y875H 0.43 possibly_damaging(0.781) TCGA-AA-3663-01 1 19549295 19549295 C T EMC1 Missense_Mutation p.E804K 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 1 19584372 19584372 C T MRTO4 Silent p.N129N 0.45 TCGA-AA-3663-01 1 196621237 196621237 A G CFH 5'UTR 0.28 TCGA-AA-3663-01 1 197053460 197053460 A C ASPM Silent p.P3476P 0.31 TCGA-AA-3663-01 1 197390221 197390221 C T CRB1 Silent p.C421C 0.34 TCGA-AA-3663-01 1 19981867 19981867 A C MINOS1-NBL1 Missense_Mutation p.Q74P 0.37 tolerated(0.08) benign(0.061) TCGA-AA-3663-01 1 200961411 200961411 T A KIF21B Missense_Mutation p.E795V 0.25 deleterious(0) probably_damaging(0.991) TCGA-AA-3663-01 1 201017742 201017742 A C CACNA1S Missense_Mutation p.L1470R 0.14 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 1 201334414 201334414 C A TNNT2 Nonsense_Mutation p.E96* 0.33 TCGA-AA-3663-01 1 201687830 201687830 C T NAV1 Silent p.S391S 0.20 TCGA-AA-3663-01 1 201763661 201763661 C T NAV1 Missense_Mutation p.A1158V 0.39 deleterious(0) benign(0.3) TCGA-AA-3663-01 1 202129687 202129687 C - PTPN7 Frame_Shift_Del p.P84Hfs*10 0.09 TCGA-AA-3663-01 1 202276527 202276527 G A LGR6 Silent p.K426K 0.29 TCGA-AA-3663-01 1 202279450 202279450 C A LGR6 Missense_Mutation p.P511H 0.08 tolerated(0.1) possibly_damaging(0.572) TCGA-AA-3663-01 1 202568392 202568392 T C SYT2 Missense_Mutation p.Y336C 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 1 203013854 203013854 C T PPFIA4 Missense_Mutation p.R203W 0.43 deleterious(0) benign(0.011) TCGA-AA-3663-01 1 203134412 203134412 G A ADORA1 Missense_Mutation p.R122Q 0.43 tolerated(0.06) benign(0.02) TCGA-AA-3663-01 1 203148932 203148932 T A CHI3L1 Missense_Mutation p.N323I 0.41 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 1 203188854 203188854 C T CHIT1 Missense_Mutation p.A285T 0.47 tolerated(0.48) benign(0.118) TCGA-AA-3663-01 1 203816608 203816608 C T ZC3H11A Missense_Mutation p.P447S 0.30 tolerated(0.14) possibly_damaging(0.511) TCGA-AA-3663-01 1 204091508 204091508 C - SOX13 Frame_Shift_Del p.P337Rfs*69 0.39 TCGA-AA-3663-01 1 204237400 204237400 C T PLEKHA6 Missense_Mutation p.R48H 0.49 deleterious(0) possibly_damaging(0.739) TCGA-AA-3663-01 1 204429733 204429733 T C PIK3C2B Missense_Mutation p.D456G 0.12 deleterious(0) benign(0.43) TCGA-AA-3663-01 1 20518807 20518807 C T UBXN10 3'UTR 0.09 TCGA-AA-3663-01 1 20519558 20519558 G A UBXN10 3'UTR 0.37 TCGA-AA-3663-01 1 205689737 205689737 G T NUCKS1 Missense_Mutation p.Q92K 0.40 tolerated(1) possibly_damaging(0.486) TCGA-AA-3663-01 1 205766075 205766075 G A SLC41A1 Missense_Mutation p.A350V 0.41 tolerated(0.43) possibly_damaging(0.874) TCGA-AA-3663-01 1 207222915 207222915 T C YOD1 Missense_Mutation p.Y166C 0.41 tolerated(0.17) possibly_damaging(0.905) TCGA-AA-3663-01 1 209776605 209776605 A G CAMK1G Missense_Mutation p.T90A 0.22 tolerated(0.43) benign(0) TCGA-AA-3663-01 1 209849424 209849424 G A G0S2 3'UTR 0.27 TCGA-AA-3663-01 1 214819526 214819526 C T CENPF Missense_Mutation p.L2205F 0.34 possibly_damaging(0.787) TCGA-AA-3663-01 1 216262355 216262355 C A USH2A Missense_Mutation p.G1629C 0.34 probably_damaging(0.992) TCGA-AA-3663-01 1 21889717 21889717 C T ALPL Missense_Mutation p.R138W 0.39 deleterious(0) possibly_damaging(0.846) TCGA-AA-3663-01 1 220101232 220101232 G A SLC30A10 Missense_Mutation p.A184V 0.47 tolerated(0.32) benign(0.01) TCGA-AA-3663-01 1 220184313 220184313 A G EPRS Missense_Mutation p.M527T 0.37 tolerated(0.53) benign(0.102) TCGA-AA-3663-01 1 220231263 220231263 T C BPNT1 3'UTR 0.46 TCGA-AA-3663-01 1 220236113 220236113 C A BPNT1 Nonsense_Mutation p.G220* 0.37 TCGA-AA-3663-01 1 220275480 220275480 T C IARS2 Missense_Mutation p.F187S 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 1 220287758 220287758 T C IARS2 Missense_Mutation p.W528R 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 1 22032310 22032310 G T USP48 Missense_Mutation p.P765H 0.28 deleterious(0.02) probably_damaging(0.96) TCGA-AA-3663-01 1 220338126 220338127 - A RAB3GAP2 Frame_Shift_Ins p.V1035Cfs*2 0.40 TCGA-AA-3663-01 1 22151344 22151344 C A LDLRAD2 3'UTR 0.37 TCGA-AA-3663-01 1 22417945 22417945 G A CDC42 Missense_Mutation p.E171K 0.30 deleterious(0.03) benign(0.301) TCGA-AA-3663-01 1 224566786 224566786 T C CNIH4 3'UTR 0.09 TCGA-AA-3663-01 1 225452887 225452887 A C DNAH14 Missense_Mutation p.N1863T 0.31 tolerated(1) benign(0) TCGA-AA-3663-01 1 225707232 225707232 T C ENAH Missense_Mutation p.E157G 0.41 tolerated(0.05) unknown(0) TCGA-AA-3663-01 1 226026384 226026384 C - EPHX1 Frame_Shift_Del p.Q134Sfs*12 0.33 TCGA-AA-3663-01 1 228400348 228400348 G T OBSCN Missense_Mutation p.E288D 0.10 probably_damaging(0.954) TCGA-AA-3663-01 1 228470890 228470890 C T OBSCN Missense_Mutation p.A3310V 0.40 probably_damaging(0.993) TCGA-AA-3663-01 1 228612784 228612784 G A HIST3H3 Silent p.T81T 0.06 TCGA-AA-3663-01 1 22927179 22927179 C T EPHA8 Missense_Mutation p.T805M 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 1 229772260 229772260 C A URB2 Missense_Mutation p.L634I 0.36 tolerated(0.23) benign(0.053) TCGA-AA-3663-01 1 229773632 229773632 T G URB2 Missense_Mutation p.V1091G 0.25 deleterious(0) benign(0.01) TCGA-AA-3663-01 1 230503810 230503810 T - PGBD5 Intron 0.28 TCGA-AA-3663-01 1 230975538 230975538 C A C1orf198 3'UTR 0.27 TCGA-AA-3663-01 1 23219452 23219452 G A EPHB2 Missense_Mutation p.A502T 0.08 tolerated(1) benign(0.001) TCGA-AA-3663-01 1 232943479 232943479 C T MAP10 Missense_Mutation p.L904F 0.11 tolerated(0.16) benign(0.442) TCGA-AA-3663-01 1 233507928 233507928 G - MLK4 Intron 0.27 TCGA-AA-3663-01 1 233518485 233518485 T - MLK4 3'UTR 0.22 TCGA-AA-3663-01 1 235418988 235418988 A G ARID4B Silent p.S87S 0.29 TCGA-AA-3663-01 1 235506684 235506684 G A GGPS1 3'UTR 0.19 TCGA-AA-3663-01 1 235973040 235973040 C T LYST Missense_Mutation p.A360T 0.32 tolerated(0.29) benign(0.299) TCGA-AA-3663-01 1 236590707 236590707 C T EDARADD Missense_Mutation p.T59I 0.39 tolerated(0.21) benign(0.019) TCGA-AA-3663-01 1 23763783 23763783 G A ASAP3 Silent p.D394D 0.09 TCGA-AA-3663-01 1 237711742 237711743 - A RYR2 Frame_Shift_Ins p.S974Kfs*32 0.31 TCGA-AA-3663-01 1 238048114 238048114 G A ZP4 Missense_Mutation p.P449S 0.36 deleterious(0.01) probably_damaging(0.92) TCGA-AA-3663-01 1 241767691 241767691 G A OPN3 Silent p.C188C 0.26 TCGA-AA-3663-01 1 242161882 242161882 G - MAP1LC3C Frame_Shift_Del p.P52Rfs*13 0.22 TCGA-AA-3663-01 1 2435530 2435530 C - PLCH2 3'UTR 0.08 TCGA-AA-3663-01 1 2440178 2440178 G A PANK4 3'UTR 0.32 TCGA-AA-3663-01 1 244803263 244803263 C T C1orf101 Silent p.F912F 0.41 TCGA-AA-3663-01 1 244849971 244849971 G T DESI2 Nonsense_Mutation p.E39* 0.35 TCGA-AA-3663-01 1 246719893 246719893 A G TFB2M Silent p.I229I 0.35 TCGA-AA-3663-01 1 247611746 247611746 G A NLRP3 Silent p.A1017A 0.46 TCGA-AA-3663-01 1 24768572 24768572 T G NIPAL3 Missense_Mutation p.S64A 0.25 tolerated(0.56) benign(0.006) TCGA-AA-3663-01 1 247751925 247751925 G A OR2G2 Silent p.L88L 0.06 TCGA-AA-3663-01 1 247902823 247902823 C T OR14K1 Silent p.L303L 0.42 TCGA-AA-3663-01 1 248262919 248262919 C T OR2L13 Missense_Mutation p.A81V 0.10 tolerated(0.28) benign(0.004) TCGA-AA-3663-01 1 248551760 248551760 T C OR2T6 Missense_Mutation p.L284S 0.37 deleterious(0) possibly_damaging(0.544) TCGA-AA-3663-01 1 248652184 248652184 C A OR2T5 Missense_Mutation p.P99T 0.16 tolerated(0.38) benign(0.009) TCGA-AA-3663-01 1 248722498 248722498 G T OR2T29 Missense_Mutation p.P99T 0.24 tolerated(0.38) benign(0.009) TCGA-AA-3663-01 1 249106158 249106158 G A SH3BP5L Missense_Mutation p.R375C 0.12 deleterious_low_confidence(0.01) benign(0.041) TCGA-AA-3663-01 1 25611169 25611169 C T RHD Missense_Mutation p.A85V 0.45 tolerated(0.49) benign(0.181) TCGA-AA-3663-01 1 25701900 25701900 G T RHCE Missense_Mutation p.L365I 0.27 tolerated(1) benign(0.004) TCGA-AA-3663-01 1 26669590 26669590 C T AIM1L Missense_Mutation p.V134I 0.36 tolerated(0.25) benign(0.082) TCGA-AA-3663-01 1 26691604 26691604 C G ZNF683 Missense_Mutation p.A145P 0.32 tolerated(0.13) benign(0.008) TCGA-AA-3663-01 1 26774112 26774112 A T DHDDS Missense_Mutation p.E168V 0.36 tolerated(0.08) benign(0.037) TCGA-AA-3663-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.28 TCGA-AA-3663-01 1 27700477 27700477 T C FCN3 Missense_Mutation p.M71V 0.29 tolerated(0.5) benign(0.131) TCGA-AA-3663-01 1 28856410 28856410 C - RCC1 Frame_Shift_Del p.P13Qfs*11 0.29 TCGA-AA-3663-01 1 28905272 28905272 G C TRNAU1AP 3'Flank 0.47 TCGA-AA-3663-01 1 28920547 28920547 G - RAB42 Frame_Shift_Del p.G81Vfs*119 0.26 TCGA-AA-3663-01 1 2938650 2938650 C T ACTRT2 Missense_Mutation p.P134S 0.24 deleterious(0.01) probably_damaging(1) TCGA-AA-3663-01 1 2939249 2939250 - C ACTRT2 Frame_Shift_Ins p.D336Rfs*18 0.36 TCGA-AA-3663-01 1 32204495 32204495 G A BAI2 Missense_Mutation p.R847C 0.38 deleterious(0) probably_damaging(0.991) TCGA-AA-3663-01 1 32221818 32221818 T C BAI2 Missense_Mutation p.E207G 0.08 tolerated(0.12) possibly_damaging(0.83) TCGA-AA-3663-01 1 32849511 32849511 G A BSDC1 Missense_Mutation p.P110S 0.24 deleterious(0.01) benign(0.389) TCGA-AA-3663-01 1 3328145 3328145 C T PRDM16 Missense_Mutation p.P462S 0.26 tolerated(0.22) benign(0.145) TCGA-AA-3663-01 1 33745882 33745882 C - ZNF362 Frame_Shift_Del p.P171Lfs*39 0.36 TCGA-AA-3663-01 1 33985192 33985192 G A CSMD2 Missense_Mutation p.R3464C 0.36 tolerated(0.06) probably_damaging(0.932) TCGA-AA-3663-01 1 34092119 34092119 C T CSMD2 Missense_Mutation p.A1715T 0.30 tolerated(0.23) benign(0.008) TCGA-AA-3663-01 1 35227688 35227688 C - GJB4 3'UTR 0.29 TCGA-AA-3663-01 1 35370639 35370639 G - DLGAP3 Frame_Shift_Del p.R116Afs*184 0.34 TCGA-AA-3663-01 1 35470778 35470778 T - ZMYM6 Frame_Shift_Del p.I637Yfs*14 0.25 TCGA-AA-3663-01 1 35484928 35484928 A - ZMYM6 Intron 0.33 TCGA-AA-3663-01 1 35578941 35578941 A - ZMYM1 Frame_Shift_Del p.T506Pfs*15 0.17 TCGA-AA-3663-01 1 36306887 36306887 C T AGO4 Missense_Mutation p.R616W 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 1 36520550 36520550 A G AGO3 Missense_Mutation p.T760A 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 1 36558726 36558726 A G ADPRHL2 Silent p.V277V 0.12 TCGA-AA-3663-01 1 36883658 36883658 T C OSCP1 3'UTR 0.12 TCGA-AA-3663-01 1 36921820 36921820 G A MRPS15 Nonsense_Mutation p.R202* 0.44 TCGA-AA-3663-01 1 3756212 3756212 T C CEP104 Missense_Mutation p.Y232C 0.39 tolerated(0.06) benign(0.031) TCGA-AA-3663-01 1 39877777 39877778 - A KIAA0754 Frame_Shift_Ins p.L480Ifs*8 0.22 TCGA-AA-3663-01 1 39878582 39878582 A G KIAA0754 Missense_Mutation p.D746G 0.06 unknown(0) TCGA-AA-3663-01 1 40125035 40125035 C T NT5C1A Missense_Mutation p.G289R 0.42 deleterious(0) probably_damaging(0.967) TCGA-AA-3663-01 1 41463172 41463172 G A CTPS1 Missense_Mutation p.A327T 0.06 tolerated(0.13) benign(0.276) TCGA-AA-3663-01 1 42049803 42049803 G A HIVEP3 Silent p.C222C 0.35 TCGA-AA-3663-01 1 43133168 43133168 G A PPIH Intron 0.14 TCGA-AA-3663-01 1 44071227 44071227 T C PTPRF Silent p.I1139I 0.37 TCGA-AA-3663-01 1 44170119 44170119 G A KDM4A 3'UTR 0.36 TCGA-AA-3663-01 1 44303941 44303941 A G ST3GAL3 Missense_Mutation p.K156R 0.24 tolerated(0.69) probably_damaging(0.961) TCGA-AA-3663-01 1 44687134 44687134 T C ERI3 3'UTR 0.43 TCGA-AA-3663-01 1 45252299 45252299 A G BEST4 Missense_Mutation p.L106P 0.23 deleterious(0.02) probably_damaging(1) TCGA-AA-3663-01 1 45553610 45553610 C T ZSWIM5 Missense_Mutation p.A299T 0.32 deleterious(0.02) unknown(0) TCGA-AA-3663-01 1 45553638 45553638 C T ZSWIM5 Silent p.T289T 0.32 TCGA-AA-3663-01 1 46751973 46751973 T C LRRC41 Missense_Mutation p.R186G 0.10 tolerated(0.26) benign(0.309) TCGA-AA-3663-01 1 47078752 47078752 C T MOB3C Missense_Mutation p.R133H 0.35 tolerated(0.1) benign(0.001) TCGA-AA-3663-01 1 47905974 47905974 A T FOXD2 3'UTR 0.33 TCGA-AA-3663-01 1 51767876 51767876 C A TTC39A Intron 0.08 TCGA-AA-3663-01 1 51860103 51860103 T C EPS15 Missense_Mutation p.H690R 0.15 tolerated(0.45) benign(0.062) TCGA-AA-3663-01 1 52215846 52215846 T C OSBPL9 Silent p.I197I 0.25 TCGA-AA-3663-01 1 52251497 52251497 A G OSBPL9 Missense_Mutation p.K626R 0.45 deleterious(0.04) possibly_damaging(0.705) TCGA-AA-3663-01 1 52820354 52820354 C G CC2D1B Missense_Mutation p.D792H 0.38 deleterious(0) probably_damaging(0.982) TCGA-AA-3663-01 1 52896915 52896915 A G ZCCHC11 Missense_Mutation p.L1494S 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3663-01 1 53322721 53322721 T C ZYG11A Missense_Mutation p.L103P 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 1 53516322 53516322 T A SCP2 Silent p.G530G 0.11 TCGA-AA-3663-01 1 53558243 53558243 C T SLC1A7 Silent p.A338A 0.32 TCGA-AA-3663-01 1 53682485 53682485 C T C1orf123 Missense_Mutation p.R103Q 0.38 deleterious(0.03) benign(0.221) TCGA-AA-3663-01 1 54423865 54423865 C T LRRC42 Missense_Mutation p.R173W 0.37 deleterious(0.02) probably_damaging(0.983) TCGA-AA-3663-01 1 55562227 55562227 T C USP24 Missense_Mutation p.E2002G 0.30 tolerated(0.15) benign(0.245) TCGA-AA-3663-01 1 57422532 57422532 T C C8B Missense_Mutation p.N101D 0.25 tolerated(1) benign(0.002) TCGA-AA-3663-01 1 57476857 57476857 C A DAB1 Missense_Mutation p.E511D 0.33 tolerated(0.37) benign(0.185) TCGA-AA-3663-01 1 59922647 59922647 T C FGGY Missense_Mutation p.L190P 0.29 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3663-01 1 6038341 6038341 C T NPHP4 Missense_Mutation p.V90I 0.34 tolerated(0.28) benign(0.005) TCGA-AA-3663-01 1 61548335 61548346 TCTCCCCCCTTC CTCCCCCCT NFIA Intron 0.34 TCGA-AA-3663-01 1 61892163 61892163 G A NFIA Missense_Mutation p.A528T 0.42 deleterious_low_confidence(0.03) benign(0.138) TCGA-AA-3663-01 1 62267407 62267407 A - INADL Frame_Shift_Del p.N507Mfs*7 0.28 TCGA-AA-3663-01 1 62672556 62672556 A G L1TD1 Missense_Mutation p.T86A 0.10 tolerated(0.34) unknown(0) TCGA-AA-3663-01 1 63096920 63096920 T C DOCK7 Missense_Mutation p.S425G 0.30 tolerated(0.31) benign(0.001) TCGA-AA-3663-01 1 6378635 6378635 G T ACOT7 Missense_Mutation p.P220Q 0.28 tolerated(0.16) benign(0.164) TCGA-AA-3663-01 1 6528286 6528286 C T PLEKHG5 Silent p.P949P 0.29 TCGA-AA-3663-01 1 66102470 66102470 T A LEPR Missense_Mutation p.S1090R 0.36 tolerated(0.24) benign(0.025) TCGA-AA-3663-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.33 TCGA-AA-3663-01 1 68592018 68592018 C T WLS Intron 0.50 TCGA-AA-3663-01 1 75699778 75699778 A G SLC44A5 Missense_Mutation p.L249P 0.27 deleterious(0) probably_damaging(0.992) TCGA-AA-3663-01 1 76262759 76262759 G A MSH4 Missense_Mutation p.R30H 0.10 tolerated_low_confidence(0.09) benign(0.005) TCGA-AA-3663-01 1 77620247 77620247 A - PIGK Frame_Shift_Del p.Q292Rfs*8 0.20 TCGA-AA-3663-01 1 78420942 78420942 A G FUBP1 Missense_Mutation p.M593T 0.38 tolerated(0.59) unknown(0) TCGA-AA-3663-01 1 7887858 7887858 T C PER3 Missense_Mutation p.C949R 0.22 tolerated(0.14) possibly_damaging(0.831) TCGA-AA-3663-01 1 79121136 79121136 C T IFI44 Silent p.G260G 0.09 TCGA-AA-3663-01 1 82409397 82409397 A G LPHN2 Missense_Mutation p.N381S 0.45 deleterious(0) possibly_damaging(0.615) TCGA-AA-3663-01 1 82450973 82450973 G A LPHN2 Missense_Mutation p.V1131M 0.07 deleterious(0) probably_damaging(0.972) TCGA-AA-3663-01 1 8415065 8415065 G A RERE 3'UTR 0.45 TCGA-AA-3663-01 1 8418724 8418724 C A RERE Missense_Mutation p.G1291C 0.33 unknown(0) TCGA-AA-3663-01 1 84880381 84880381 G A DNASE2B Missense_Mutation p.A306T 0.36 deleterious(0) possibly_damaging(0.491) TCGA-AA-3663-01 1 85130227 85130227 T - SSX2IP Frame_Shift_Del p.K182Nfs*17 0.09 TCGA-AA-3663-01 1 85790480 85790480 G - DDAH1 Frame_Shift_Del p.N229Tfs*24 0.28 TCGA-AA-3663-01 1 89237389 89237389 T C PKN2 Missense_Mutation p.L271S 0.42 deleterious(0) probably_damaging(0.955) TCGA-AA-3663-01 1 89299146 89299146 C T PKN2 3'UTR 0.33 TCGA-AA-3663-01 1 89523904 89523904 T - GBP1 Frame_Shift_Del p.D216Mfs*51 0.09 TCGA-AA-3663-01 1 9101904 9101904 T C SLC2A5 Missense_Mutation p.T171A 0.10 deleterious(0.03) probably_damaging(0.964) TCGA-AA-3663-01 1 91403554 91403554 C T ZNF644 Missense_Mutation p.G1059D 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 1 91405341 91405341 A G ZNF644 Missense_Mutation p.Y524H 0.46 tolerated(0.05) probably_damaging(0.998) TCGA-AA-3663-01 1 92769903 92769903 A - RPAP2 Frame_Shift_Del p.K133Sfs*38 0.24 TCGA-AA-3663-01 1 93301796 93301796 T C RPL5 Missense_Mutation p.V125A 0.36 tolerated(0.37) benign(0.049) TCGA-AA-3663-01 1 94032917 94032917 T C BCAR3 Missense_Mutation p.M740V 0.27 tolerated(1) benign(0.207) TCGA-AA-3663-01 1 94639451 94639451 C T ARHGAP29 Missense_Mutation p.E1254K 0.38 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-AA-3663-01 1 94668131 94668131 T - ARHGAP29 Frame_Shift_Del p.K371Sfs*12 0.25 TCGA-AA-3663-01 1 95710178 95710178 T C RWDD3 Missense_Mutation p.L166S 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 20 1108118 1108118 A G PSMF1 Missense_Mutation p.Y111C 0.46 deleterious(0) probably_damaging(0.945) TCGA-AA-3663-01 20 11900477 11900477 A G BTBD3 Missense_Mutation p.M177V 0.39 tolerated(0.1) benign(0.01) TCGA-AA-3663-01 20 13134713 13134713 T C SPTLC3 Missense_Mutation p.M448T 0.07 deleterious(0) possibly_damaging(0.639) TCGA-AA-3663-01 20 1426320 1426320 T C NSFL1C Missense_Mutation p.H316R 0.33 tolerated(0.06) probably_damaging(0.916) TCGA-AA-3663-01 20 16496281 16496281 A G KIF16B Missense_Mutation p.V87A 0.22 deleterious(0) possibly_damaging(0.539) TCGA-AA-3663-01 20 17587822 17587822 A G DSTN 3'UTR 0.49 TCGA-AA-3663-01 20 20506901 20506901 C T RALGAPA2 Missense_Mutation p.A1230T 0.36 tolerated(0.3) benign(0) TCGA-AA-3663-01 20 21309203 21309203 C T XRN2 Missense_Mutation p.R108C 0.48 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 20 22563462 22563462 T G FOXA2 Missense_Mutation p.S140R 0.42 deleterious(0) probably_damaging(0.931) TCGA-AA-3663-01 20 25002128 25002128 G A ACSS1 Silent p.A335A 0.25 TCGA-AA-3663-01 20 25388532 25388532 G A GINS1 Splice_Site p.X25_splice 0.38 TCGA-AA-3663-01 20 2816204 2816204 C - PCED1A Frame_Shift_Del p.C425Afs*11 0.33 TCGA-AA-3663-01 20 30513752 30513752 T G TTLL9 Intron 0.40 TCGA-AA-3663-01 20 30584664 30584664 C T XKR7 Missense_Mutation p.R382C 0.48 tolerated(0.3) benign(0.004) TCGA-AA-3663-01 20 30898105 30898105 T C KIF3B Silent p.Y175Y 0.34 TCGA-AA-3663-01 20 309214 309214 A - SOX12 3'UTR 0.43 TCGA-AA-3663-01 20 31021699 31021699 G A ASXL1 Silent p.E566E 0.13 TCGA-AA-3663-01 20 31652621 31652621 C T BPIFB3 Silent p.G298G 0.38 TCGA-AA-3663-01 20 31685512 31685512 G A BPIFB4 Silent p.A496A 0.30 TCGA-AA-3663-01 20 31885338 31885338 C T BPIFB1 Missense_Mutation p.P202L 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 20 3211194 3211194 A - SLC4A11 Frame_Shift_Del p.F504Sfs*7 0.18 TCGA-AA-3663-01 20 3215425 3215425 A - SLC4A11 Frame_Shift_Del p.F111Lfs*32 0.34 TCGA-AA-3663-01 20 33337897 33337897 G C NCOA6 Missense_Mutation p.P701A 0.11 possibly_damaging(0.558) TCGA-AA-3663-01 20 33714096 33714096 C T EDEM2 Missense_Mutation p.M309I 0.26 tolerated(0.25) benign(0.101) TCGA-AA-3663-01 20 34240586 34240586 A G RBM12 Missense_Mutation p.C887R 0.23 tolerated(0.07) unknown(0) TCGA-AA-3663-01 20 34242084 34242084 G A RBM12 Silent p.G387G 0.36 TCGA-AA-3663-01 20 3529886 3529886 A C ATRN Missense_Mutation p.K338T 0.35 tolerated(0.59) benign(0.007) TCGA-AA-3663-01 20 35646736 35646736 C A RBL1 Nonsense_Mutation p.E890* 0.39 TCGA-AA-3663-01 20 36612013 36612013 G T TTI1 Missense_Mutation p.P1039T 0.33 deleterious(0) probably_damaging(0.99) TCGA-AA-3663-01 20 36841601 36841601 G A KIAA1755 Missense_Mutation p.A1149V 0.43 deleterious(0.04) benign(0.063) TCGA-AA-3663-01 20 376910 376910 A G TRIB3 Missense_Mutation p.D218G 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 20 39728715 39728715 A - TOP1 Frame_Shift_Del p.K333Nfs*3 0.23 TCGA-AA-3663-01 20 39792421 39792421 G A PLCG1 Missense_Mutation p.D320N 0.45 tolerated(0.09) benign(0.108) TCGA-AA-3663-01 20 40045861 40045862 AG - CHD6 Frame_Shift_Del p.Y2086Ffs*4 0.30 TCGA-AA-3663-01 20 40730864 40730864 T C PTPRT Missense_Mutation p.K1205R 0.36 deleterious(0.04) probably_damaging(0.995) TCGA-AA-3663-01 20 42143190 42143190 G A L3MBTL1 Intron 0.33 TCGA-AA-3663-01 20 4228602 4228602 C T ADRA1D Missense_Mutation p.V335M 0.39 tolerated(0.06) benign(0.108) TCGA-AA-3663-01 20 43251250 43251250 T C ADA Missense_Mutation p.D275G 0.10 tolerated(0.15) benign(0.004) TCGA-AA-3663-01 20 43559272 43559272 T C PABPC1L Missense_Mutation p.Y382H 0.39 tolerated(0.11) benign(0.12) TCGA-AA-3663-01 20 43851609 43851609 T A SEMG2 Missense_Mutation p.S446T 0.40 tolerated(0.33) benign(0.418) TCGA-AA-3663-01 20 44512363 44512363 C - ZSWIM1 Frame_Shift_Del p.P379Lfs*20 0.38 TCGA-AA-3663-01 20 45354828 45354828 G T SLC2A10 Missense_Mutation p.A385S 0.08 tolerated(0.64) benign(0.08) TCGA-AA-3663-01 20 45853151 45853151 G T ZMYND8 Silent p.A979A 0.08 TCGA-AA-3663-01 20 4766880 4766880 C T RASSF2 Missense_Mutation p.R303H 0.37 tolerated(0.23) benign(0.004) TCGA-AA-3663-01 20 47989891 47989891 G - KCNB1 Frame_Shift_Del p.R736Gfs*9 0.35 TCGA-AA-3663-01 20 49195847 49195847 T C PTPN1 Missense_Mutation p.M282T 0.09 deleterious(0.05) benign(0.062) TCGA-AA-3663-01 20 50406729 50406729 A C SALL4 Missense_Mutation p.S765A 0.34 tolerated(0.06) benign(0.339) TCGA-AA-3663-01 20 50768575 50768576 - A ZFP64 3'UTR 0.24 TCGA-AA-3663-01 20 55027595 55027595 G A CASS4 Missense_Mutation p.V455I 0.40 tolerated(0.29) benign(0.122) TCGA-AA-3663-01 20 55206414 55206414 G A TFAP2C Missense_Mutation p.A68T 0.36 tolerated(0.35) benign(0.001) TCGA-AA-3663-01 20 57428327 57428327 G A GNAS Missense_Mutation p.V3M 0.36 tolerated_low_confidence(1) unknown(0) TCGA-AA-3663-01 20 57769388 57769388 A G ZNF831 Missense_Mutation p.E1105G 0.34 tolerated(0.85) benign(0) TCGA-AA-3663-01 20 57829432 57829432 G A ZNF831 Silent p.S1556S 0.30 TCGA-AA-3663-01 20 57896220 57896220 T - EDN3 Frame_Shift_Del p.C173Afs*36 0.30 TCGA-AA-3663-01 20 58569360 58569360 T C CDH26 Silent p.N494N 0.30 TCGA-AA-3663-01 20 61430377 61430377 G A MRGBP Missense_Mutation p.D135N 0.31 tolerated(0.06) probably_damaging(0.977) TCGA-AA-3663-01 20 61511257 61511257 C A DIDO1 Missense_Mutation p.Q2017H 0.39 possibly_damaging(0.844) TCGA-AA-3663-01 20 61513092 61513092 G A DIDO1 Missense_Mutation p.R1406W 0.08 possibly_damaging(0.719) TCGA-AA-3663-01 20 62328727 62328729 CTT - TNFRSF6B In_Frame_Del p.F158del 0.42 TCGA-AA-3663-01 20 62329975 62329975 T - TNFRSF6B 3'UTR 0.39 TCGA-AA-3663-01 20 62421840 62421840 A G ZBTB46 Missense_Mutation p.Y91H 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 21 19642192 19642192 T - TMPRSS15 3'UTR 0.29 TCGA-AA-3663-01 21 22782670 22782670 G A NCAM2 Silent p.V424V 0.10 TCGA-AA-3663-01 21 27087041 27087041 T C JAM2 3'Flank 0.08 TCGA-AA-3663-01 21 28296859 28296859 G A ADAMTS5 Missense_Mutation p.T769I 0.04 tolerated(0.39) possibly_damaging(0.565) TCGA-AA-3663-01 21 30409681 30409681 A - USP16 Frame_Shift_Del p.N179Tfs*9 0.08 TCGA-AA-3663-01 21 31587550 31587550 A - CLDN8 3'UTR 0.32 TCGA-AA-3663-01 21 31769087 31769087 A - KRTAP13-1 3'UTR 0.29 TCGA-AA-3663-01 21 33974571 33974571 T C C21orf59 Intron 0.34 TCGA-AA-3663-01 21 34003287 34003287 G A SYNJ1 3'Flank 0.09 TCGA-AA-3663-01 21 34715865 34715865 A C IFNAR1 Silent p.R186R 0.25 TCGA-AA-3663-01 21 35472678 35472678 A G SLC5A3 3'UTR 0.46 TCGA-AA-3663-01 21 35473387 35473387 G A SLC5A3 3'UTR 0.41 TCGA-AA-3663-01 21 36079613 36079613 G A CLIC6 Silent p.P470P 0.26 TCGA-AA-3663-01 21 37649349 37649352 CATC - DOPEY2 Frame_Shift_Del p.S1889Pfs*36 0.37 TCGA-AA-3663-01 21 37661464 37661464 G T DOPEY2 Missense_Mutation p.A2159S 0.08 tolerated(0.15) possibly_damaging(0.668) TCGA-AA-3663-01 21 42780011 42780011 C T MX2 Nonsense_Mutation p.Q667* 0.34 TCGA-AA-3663-01 21 44152048 44152048 G A PDE9A Missense_Mutation p.R144H 0.38 tolerated(0.26) benign(0) TCGA-AA-3663-01 21 45542143 45542143 C T PWP2 Silent p.N574N 0.39 TCGA-AA-3663-01 21 45550510 45550510 G A PWP2 Missense_Mutation p.A873T 0.36 tolerated(0.3) possibly_damaging(0.487) TCGA-AA-3663-01 21 45666254 45666255 TT - DNMT3L 3'UTR 0.32 TCGA-AA-3663-01 21 45732045 45732045 C A PFKL Silent p.R99R 0.30 TCGA-AA-3663-01 21 45789124 45789124 G A TRPM2 Silent p.R223R 0.07 TCGA-AA-3663-01 21 45938151 45938151 T - C21orf90 Frame_Shift_Del p.L19Cfs*8 0.32 TCGA-AA-3663-01 21 45994584 45994584 T G KRTAP10-4 Missense_Mutation p.C317G 0.10 deleterious(0) unknown(0) TCGA-AA-3663-01 21 46131370 46131370 C T TSPEAR Silent p.T20T 0.42 TCGA-AA-3663-01 21 47678996 47678996 T C MCM3AP Silent p.V1197V 0.40 TCGA-AA-3663-01 21 47987431 47987431 G T DIP2A Missense_Mutation p.G1538W 0.38 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 21 48084332 48084332 C T PRMT2 3'UTR 0.42 TCGA-AA-3663-01 21 9908319 9908319 G T TEKT4P2 RNA 0.60 TCGA-AA-3663-01 22 17680497 17680497 C G CECR1 Intron 0.11 TCGA-AA-3663-01 22 18604396 18604396 T - TUBA8 Frame_Shift_Del p.F53Sfs*15 0.23 TCGA-AA-3663-01 22 18769775 18769775 A G GGT3P RNA 0.18 TCGA-AA-3663-01 22 18841227 18841227 A G AC008132.13 3'Flank 0.16 TCGA-AA-3663-01 22 19055710 19055712 ATG - DGCR2 In_Frame_Del p.H77del 0.29 TCGA-AA-3663-01 22 19385577 19385577 G A HIRA Missense_Mutation p.A144V 0.49 tolerated(0.3) benign(0.015) TCGA-AA-3663-01 22 19468524 19468524 G - CDC45 Frame_Shift_Del p.W55Gfs*21 0.23 TCGA-AA-3663-01 22 19808861 19808861 C T GNB1L Silent p.P6P 0.39 TCGA-AA-3663-01 22 19966499 19966499 C T ARVCF Missense_Mutation p.E501K 0.13 tolerated(0.06) possibly_damaging(0.495) TCGA-AA-3663-01 22 20114614 20114615 - T RANBP1 3'UTR 0.29 TCGA-AA-3663-01 22 21328131 21328131 G A AIFM3 Silent p.P110P 0.27 TCGA-AA-3663-01 22 21333813 21333813 A C AIFM3 Intron 0.33 TCGA-AA-3663-01 22 21354360 21354360 C T THAP7 Missense_Mutation p.A247T 0.43 deleterious(0.03) probably_damaging(0.922) TCGA-AA-3663-01 22 21385715 21385715 A G SLC7A4 Silent p.G129G 0.13 TCGA-AA-3663-01 22 29169758 29169758 G T CCDC117 Missense_Mutation p.E77D 0.37 tolerated(0.56) benign(0.388) TCGA-AA-3663-01 22 29656138 29656138 G A RHBDD3 Silent p.L358L 0.36 TCGA-AA-3663-01 22 29695767 29695767 G T EWSR1 Silent p.G624G 0.40 TCGA-AA-3663-01 22 29708273 29708273 G - GAS2L1 3'Flank 0.42 TCGA-AA-3663-01 22 29925202 29925202 C A THOC5 Missense_Mutation p.G292C 0.24 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 22 29957620 29957620 G A NIPSNAP1 Nonsense_Mutation p.R152* 0.25 TCGA-AA-3663-01 22 30070875 30070875 C T NF2 Missense_Mutation p.A464V 0.34 deleterious(0.01) possibly_damaging(0.904) TCGA-AA-3663-01 22 30416523 30416523 G A MTMR3 Missense_Mutation p.A959T 0.44 tolerated_low_confidence(0.32) benign(0.002) TCGA-AA-3663-01 22 30733726 30733726 G A SF3A1 Missense_Mutation p.A635V 0.15 tolerated(0.23) benign(0.079) TCGA-AA-3663-01 22 30781947 30781947 A G RNF215 Missense_Mutation p.V178A 0.45 deleterious(0) possibly_damaging(0.581) TCGA-AA-3663-01 22 31523001 31523001 G A INPP5J Missense_Mutation p.R162H 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 22 32113025 32113025 G A PRR14L Missense_Mutation p.P267L 0.27 tolerated(0.08) possibly_damaging(0.447) TCGA-AA-3663-01 22 33255324 33255324 C - TIMP3 Frame_Shift_Del p.P201Rfs*26 0.18 TCGA-AA-3663-01 22 36698614 36698614 C A MYH9 Missense_Mutation p.K833N 0.15 possibly_damaging(0.784) TCGA-AA-3663-01 22 36886162 36886162 G A FOXRED2 Missense_Mutation p.R650C 0.35 deleterious_low_confidence(0.05) benign(0.35) TCGA-AA-3663-01 22 37272121 37272121 T C NCF4 3'UTR 0.39 TCGA-AA-3663-01 22 37903920 37903920 C T CARD10 Silent p.T369T 0.38 TCGA-AA-3663-01 22 38021882 38021882 G A GGA1 Missense_Mutation p.R340H 0.39 tolerated(0.13) benign(0) TCGA-AA-3663-01 22 38154063 38154063 T C TRIOBP Missense_Mutation p.V2044A 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3663-01 22 38315060 38315060 A G MICALL1 Silent p.S148S 0.11 TCGA-AA-3663-01 22 39913753 39913753 G A MIEF1 3'UTR 0.25 TCGA-AA-3663-01 22 39917856 39917856 T C ATF4 Missense_Mutation p.I102T 0.34 tolerated(0.47) benign(0) TCGA-AA-3663-01 22 40669453 40669453 G - TNRC6B Frame_Shift_Del p.E999Rfs*48 0.22 TCGA-AA-3663-01 22 40704607 40704607 G T TNRC6B Missense_Mutation p.E1404D 0.10 tolerated(1) benign(0.013) TCGA-AA-3663-01 22 40807831 40807831 G - MKL1 Frame_Shift_Del p.L787Wfs*41 0.22 TCGA-AA-3663-01 22 41642571 41642571 A G RANGAP1 3'UTR 0.08 TCGA-AA-3663-01 22 42091976 42091976 C T C22orf46 3'UTR 0.35 TCGA-AA-3663-01 22 42473903 42473903 G A FAM109B Silent p.L202L 0.32 TCGA-AA-3663-01 22 42523577 42523577 C T CYP2D6 Missense_Mutation p.D349N 0.38 deleterious(0.01) possibly_damaging(0.872) TCGA-AA-3663-01 22 42564716 42564716 G - TCF20 Frame_Shift_Del p.L1943Cfs*118 0.32 TCGA-AA-3663-01 22 42905059 42905059 G A RRP7A 3'Flank 0.35 TCGA-AA-3663-01 22 43634901 43634901 C T SCUBE1 Missense_Mutation p.V263M 0.49 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 22 44237750 44237750 C A SULT4A1 Missense_Mutation p.G78C 0.35 deleterious(0) possibly_damaging(0.498) TCGA-AA-3663-01 22 44328793 44328793 C A PNPLA3 Silent p.P174P 0.41 TCGA-AA-3663-01 22 46657809 46657809 T C PKDREJ Missense_Mutation p.I471V 0.39 tolerated(0.57) benign(0.012) TCGA-AA-3663-01 22 46658367 46658367 T G PKDREJ Silent p.R285R 0.09 TCGA-AA-3663-01 22 46684403 46684403 G A TTC38 Missense_Mutation p.A334T 0.24 tolerated(0.05) benign(0.207) TCGA-AA-3663-01 22 46751342 46751342 C - TRMU Frame_Shift_Del p.R294Gfs*12 0.40 TCGA-AA-3663-01 22 46793725 46793725 C A CELSR1 Silent p.T1849T 0.15 TCGA-AA-3663-01 22 46860006 46860006 T C CELSR1 Missense_Mutation p.T1261A 0.29 deleterious(0.01) possibly_damaging(0.694) TCGA-AA-3663-01 22 50488628 50488628 C T TTLL8 Missense_Mutation p.A70T 0.35 tolerated(0.6) benign(0.011) TCGA-AA-3663-01 22 50589175 50589175 A G MOV10L1 Silent p.A913A 0.33 TCGA-AA-3663-01 22 50655869 50655869 G A SELO 3'UTR 0.11 TCGA-AA-3663-01 22 50721851 50721851 G A PLXNB2 Missense_Mutation p.A865V 0.34 tolerated(0.35) benign(0.017) TCGA-AA-3663-01 22 50899955 50899955 G - SBF1 Frame_Shift_Del p.L946Wfs*16 0.25 TCGA-AA-3663-01 2 101554250 101554250 C T NPAS2 Silent p.D103D 0.31 TCGA-AA-3663-01 2 101620679 101620679 A G RPL31 Missense_Mutation p.E56G 0.11 deleterious(0.05) benign(0.33) TCGA-AA-3663-01 2 101652606 101652606 G T TBC1D8 Missense_Mutation p.L478M 0.37 tolerated(0.21) probably_damaging(0.954) TCGA-AA-3663-01 2 102793287 102793287 T C IL1R1 3'UTR 0.20 TCGA-AA-3663-01 2 106002964 106002964 G A FHL2 Missense_Mutation p.R4C 0.39 tolerated(0.07) benign(0.081) TCGA-AA-3663-01 2 106761768 106761768 C T UXS1 Missense_Mutation p.G117D 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3663-01 2 106780123 106780124 - T UXS1 Frame_Shift_Ins p.S77Kfs*35 0.28 TCGA-AA-3663-01 2 109429367 109429367 T C CCDC138 Missense_Mutation p.V342A 0.39 tolerated(0.41) benign(0.294) TCGA-AA-3663-01 2 112614410 112614410 A G ANAPC1 Missense_Mutation p.V471A 0.14 deleterious(0) benign(0.077) TCGA-AA-3663-01 2 113416890 113416890 C T SLC20A1 Silent p.G386G 0.37 TCGA-AA-3663-01 2 113498555 113498555 T - CKAP2L Frame_Shift_Del p.T618Lfs*3 0.27 TCGA-AA-3663-01 2 113890297 113890297 C T IL1RN Missense_Mutation p.S131L 0.43 tolerated(0.09) benign(0.231) TCGA-AA-3663-01 2 113955150 113955150 G A PSD4 Missense_Mutation p.G799D 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 2 116283537 116283537 G A DPP10 Missense_Mutation p.D148N 0.27 tolerated(1) benign(0.048) TCGA-AA-3663-01 2 116572517 116572517 C A DPP10 Silent p.R621R 0.58 TCGA-AA-3663-01 2 122176246 122176246 G A CLASP1 Missense_Mutation p.R758C 0.31 deleterious(0.04) benign(0.037) TCGA-AA-3663-01 2 122493284 122493284 G A NIFK Missense_Mutation p.R50C 0.32 deleterious(0.03) benign(0.004) TCGA-AA-3663-01 2 128044400 128044400 A G ERCC3 Silent p.I407I 0.37 TCGA-AA-3663-01 2 128393334 128393334 C T MYO7B Missense_Mutation p.S1927L 0.48 deleterious(0) possibly_damaging(0.474) TCGA-AA-3663-01 2 128477304 128477304 T C WDR33 Silent p.Q765Q 0.26 TCGA-AA-3663-01 2 128628904 128628904 C T AMMECR1L Missense_Mutation p.R146Q 0.28 deleterious(0.04) benign(0.273) TCGA-AA-3663-01 2 130878010 130878010 A G POTEF Missense_Mutation p.W27R 0.09 tolerated_low_confidence(0.05) benign(0.041) TCGA-AA-3663-01 2 132914602 132914602 A G ANKRD30BL Silent p.L151L 0.10 TCGA-AA-3663-01 2 136872415 136872415 A - CXCR4 3'UTR 0.32 TCGA-AA-3663-01 2 136873160 136873160 T C CXCR4 Missense_Mutation p.H117R 0.45 deleterious(0.01) probably_damaging(0.973) TCGA-AA-3663-01 2 137872806 137872806 C T THSD7B Missense_Mutation p.R438W 0.36 deleterious(0) probably_damaging(0.968) TCGA-AA-3663-01 2 141986873 141986873 A G LRP1B Silent p.N243N 0.07 TCGA-AA-3663-01 2 144381811 144381811 C A ARHGAP15 Missense_Mutation p.F371L 0.32 tolerated(0.35) benign(0.066) TCGA-AA-3663-01 2 152373011 152373011 A G NEB Missense_Mutation p.Y7623H 0.09 probably_damaging(0.995) TCGA-AA-3663-01 2 158626923 158626923 C T ACVR1 Silent p.T249T 0.28 TCGA-AA-3663-01 2 159195592 159195592 G T CCDC148 Missense_Mutation p.D164E 0.09 tolerated(0.81) benign(0) TCGA-AA-3663-01 2 159517886 159517886 G A PKP4 Missense_Mutation p.R712Q 0.08 deleterious(0) probably_damaging(0.909) TCGA-AA-3663-01 2 160737591 160737591 T C LY75-CD302 Intron 0.28 TCGA-AA-3663-01 2 160803238 160803238 T G PLA2R1 Intron 0.18 TCGA-AA-3663-01 2 162865098 162865098 G A DPP4 Missense_Mutation p.A654V 0.25 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 2 163134723 163134723 T C IFIH1 Missense_Mutation p.E586G 0.11 tolerated(0.09) benign(0.373) TCGA-AA-3663-01 2 163136602 163136602 T C IFIH1 Silent p.A515A 0.35 TCGA-AA-3663-01 2 164468132 164468132 T - FIGN Frame_Shift_Del p.K70Nfs*29 0.23 TCGA-AA-3663-01 2 166170418 166170418 C T SCN2A Missense_Mutation p.R395C 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 2 166246069 166246069 G A SCN2A Missense_Mutation p.R1918H 0.29 tolerated(0.1) benign(0.003) TCGA-AA-3663-01 2 167055200 167055200 G A SCN9A Silent p.S1972S 0.37 TCGA-AA-3663-01 2 169699563 169699563 A - NOSTRIN Frame_Shift_Del p.N191Tfs*9 0.26 TCGA-AA-3663-01 2 170062573 170062573 C T LRP2 Missense_Mutation p.V2506I 0.44 benign(0.035) TCGA-AA-3663-01 2 170591907 170591907 G A KLHL23 Missense_Mutation p.R128Q 0.33 tolerated(0.9) benign(0.001) TCGA-AA-3663-01 2 171641321 171641321 C T ERICH2 Missense_Mutation p.A65V 0.35 deleterious(0.02) probably_damaging(1) TCGA-AA-3663-01 2 172016964 172016964 C - TLK1 5'UTR 0.34 TCGA-AA-3663-01 2 174074592 174074592 G A MLTK Intron 0.43 TCGA-AA-3663-01 2 175440005 175440005 G A WIPF1 Silent p.G95G 0.15 TCGA-AA-3663-01 2 175982979 175982979 T - ATF2 Frame_Shift_Del p.M107Cfs*3 0.32 TCGA-AA-3663-01 2 176981622 176981622 G A HOXD10 Missense_Mutation p.A21T 0.37 tolerated(0.13) probably_damaging(0.993) TCGA-AA-3663-01 2 177036447 177036447 G T HOXD3 Missense_Mutation p.K248N 0.26 deleterious(0) benign(0.001) TCGA-AA-3663-01 2 178402942 178402942 A - AGPS 3'UTR 0.25 TCGA-AA-3663-01 2 179396160 179396160 G A TTN Missense_Mutation p.A35061V 0.39 TCGA-AA-3663-01 2 179441840 179441840 G T TTN Silent p.S23074S 0.35 TCGA-AA-3663-01 2 179451358 179451358 G T TTN Missense_Mutation p.L21424M 0.29 TCGA-AA-3663-01 2 179494034 179494034 G A TTN Silent p.S14806S 0.37 TCGA-AA-3663-01 2 179495761 179495761 C A TTN Missense_Mutation p.D14672Y 0.25 TCGA-AA-3663-01 2 1795028 1795028 C A MYT1L 3'UTR 0.37 TCGA-AA-3663-01 2 179529600 179529600 T - TTN Frame_Shift_Del p.R12033Efs*125 0.12 TCGA-AA-3663-01 2 179531974 179531974 G T TTN Missense_Mutation p.P11929H 0.38 TCGA-AA-3663-01 2 179616386 179616386 G A TTN Intron 0.40 TCGA-AA-3663-01 2 179648447 179648447 C T TTN Silent p.S947S 0.48 TCGA-AA-3663-01 2 186670504 186670504 G A FSIP2 Missense_Mutation p.V5580I 0.42 benign(0.01) TCGA-AA-3663-01 2 187465032 187465032 C A ITGAV Intron 0.10 TCGA-AA-3663-01 2 187511448 187511448 A - ITGAV Frame_Shift_Del p.G401Efs*13 0.30 TCGA-AA-3663-01 2 187521085 187521085 G - ITGAV Frame_Shift_Del p.G561Dfs*2 0.30 TCGA-AA-3663-01 2 187626535 187626535 T C FAM171B Missense_Mutation p.V489A 0.47 tolerated(0.74) benign(0.006) TCGA-AA-3663-01 2 187713819 187713819 T G ZSWIM2 Missense_Mutation p.R13S 0.31 deleterious(0.04) possibly_damaging(0.647) TCGA-AA-3663-01 2 189852809 189852809 C - COL3A1 Frame_Shift_Del p.P179Qfs*43 0.09 TCGA-AA-3663-01 2 189873729 189873729 C T COL3A1 Missense_Mutation p.A1202V 0.30 unknown(0) TCGA-AA-3663-01 2 189876399 189876399 C T COL3A1 Missense_Mutation p.R1434C 0.39 unknown(0) TCGA-AA-3663-01 2 189916141 189916141 C T COL5A2 Missense_Mutation p.D946N 0.08 unknown(0) TCGA-AA-3663-01 2 190554671 190554671 T A ANKAR Missense_Mutation p.S340R 0.36 tolerated(0.78) benign(0.003) TCGA-AA-3663-01 2 191067729 191067729 A - C2orf88 3'UTR 0.31 TCGA-AA-3663-01 2 197860085 197860085 T G ANKRD44 3'UTR 0.08 TCGA-AA-3663-01 2 20113384 20113384 C T WDR35 Missense_Mutation p.G1161S 0.38 tolerated(0.42) benign(0) TCGA-AA-3663-01 2 201355056 201355056 C T KCTD18 Missense_Mutation p.A350T 0.29 tolerated_low_confidence(0.54) benign(0.002) TCGA-AA-3663-01 2 202569242 202569242 G A ALS2 Silent p.H1591H 0.26 TCGA-AA-3663-01 2 202901042 202901042 C T FZD7 Missense_Mutation p.R558C 0.36 deleterious(0) probably_damaging(0.953) TCGA-AA-3663-01 2 203682185 203682185 C T ICA1L Missense_Mutation p.A214T 0.40 deleterious(0.01) possibly_damaging(0.739) TCGA-AA-3663-01 2 203881066 203881066 A G NBEAL1 5'UTR 0.08 TCGA-AA-3663-01 2 204116770 204116770 A - CYP20A1 Frame_Shift_Del p.K125Nfs*7 0.30 TCGA-AA-3663-01 2 206548040 206548040 T C NRP2 Missense_Mutation p.V9A 0.12 tolerated(0.51) benign(0.013) TCGA-AA-3663-01 2 207310095 207310095 G A ADAM23 Silent p.L93L 0.33 TCGA-AA-3663-01 2 208030203 208030203 C T KLF7 Silent p.E30E 0.30 TCGA-AA-3663-01 2 20818685 20818685 C A HS1BP3 3'UTR 0.37 TCGA-AA-3663-01 2 209302583 209302583 C T PTH2R Nonsense_Mutation p.Q130* 0.23 TCGA-AA-3663-01 2 210642073 210642073 G T UNC80 Missense_Mutation p.E130D 0.18 benign(0.001) TCGA-AA-3663-01 2 216191558 216191558 C G ATIC Missense_Mutation p.T182R 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 2 216251523 216251523 G T FN1 Silent p.R1501R 0.42 TCGA-AA-3663-01 2 218751284 218751284 C T TNS1 Missense_Mutation p.G193S 0.39 deleterious(0) possibly_damaging(0.705) TCGA-AA-3663-01 2 219140205 219140205 C T TMBIM1 Missense_Mutation p.R310H 0.36 tolerated(0.06) benign(0.014) TCGA-AA-3663-01 2 219374736 219374736 G A USP37 Missense_Mutation p.P331S 0.28 tolerated(0.48) benign(0.032) TCGA-AA-3663-01 2 219508084 219508084 C - ZNF142 Frame_Shift_Del p.G1052Dfs*20 0.35 TCGA-AA-3663-01 2 219679738 219679738 G A CYP27A1 Silent p.L527L 0.35 TCGA-AA-3663-01 2 219692575 219692575 A G PRKAG3 Silent p.H267H 0.32 TCGA-AA-3663-01 2 219874780 219874780 A - CCDC108 Frame_Shift_Del p.S1446Pfs*35 0.25 TCGA-AA-3663-01 2 220110685 220110685 G A STK16 5'UTR 0.58 TCGA-AA-3663-01 2 220246152 220246152 C T DNPEP Missense_Mutation p.V382M 0.35 deleterious(0) probably_damaging(0.994) TCGA-AA-3663-01 2 220353555 220353555 G A SPEG Silent p.A2694A 0.43 TCGA-AA-3663-01 2 220364877 220364878 - A GMPPA Frame_Shift_Ins p.P27Tfs*16 0.23 TCGA-AA-3663-01 2 220427315 220427315 T C OBSL1 Missense_Mutation p.E921G 0.40 deleterious(0.05) possibly_damaging(0.787) TCGA-AA-3663-01 2 222428541 222428541 T - EPHA4 Frame_Shift_Del p.M245Cfs*89 0.27 TCGA-AA-3663-01 2 223065874 223065874 A - PAX3 3'UTR 0.33 TCGA-AA-3663-01 2 223158362 223158362 C G PAX3 Intron 0.25 TCGA-AA-3663-01 2 223168767 223168767 C T CCDC140 Missense_Mutation p.T49I 0.07 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-AA-3663-01 2 224743303 224743303 C T WDFY1 3'UTR 0.41 TCGA-AA-3663-01 2 225642914 225642914 T C DOCK10 Missense_Mutation p.K1915E 0.07 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 2 228770990 228770990 G A DAW1 Missense_Mutation p.S265N 0.37 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 2 231338140 231338140 G A SP100 Missense_Mutation p.A511T 0.51 tolerated(0.13) possibly_damaging(0.682) TCGA-AA-3663-01 2 232081448 232081448 A G ARMC9 Missense_Mutation p.Y149C 0.30 deleterious(0) possibly_damaging(0.85) TCGA-AA-3663-01 2 234652471 234652471 T C UGT1A10 Intron 0.26 TCGA-AA-3663-01 2 234681161 234681161 A - UGT1A4 Frame_Shift_Del p.R524Efs*22 0.33 TCGA-AA-3663-01 2 234905053 234905053 G A TRPM8 Missense_Mutation p.R1008H 0.36 deleterious(0.01) possibly_damaging(0.726) TCGA-AA-3663-01 2 234967600 234967600 G A SPP2 Missense_Mutation p.V111M 0.39 tolerated(0.1) benign(0.389) TCGA-AA-3663-01 2 237406038 237406038 T C IQCA1 Missense_Mutation p.Q35R 0.38 tolerated(1) benign(0) TCGA-AA-3663-01 2 238436066 238436066 C T MLPH Silent p.A309A 0.38 TCGA-AA-3663-01 2 239038949 239038949 C A ESPNL Silent p.R532R 0.46 TCGA-AA-3663-01 2 240969717 240969717 C T OR6B2 Missense_Mutation p.A44T 0.06 tolerated(0.13) benign(0.005) TCGA-AA-3663-01 2 240985325 240985325 G A OR6B3 Silent p.L55L 0.08 TCGA-AA-3663-01 2 241556465 241556465 C T GPR35 Intron 0.42 TCGA-AA-3663-01 2 241706726 241706726 T G KIF1A Missense_Mutation p.M512L 0.23 deleterious(0.05) benign(0.273) TCGA-AA-3663-01 2 242501866 242501866 C A BOK Silent p.A108A 0.41 TCGA-AA-3663-01 2 242572991 242572991 G A THAP4 Missense_Mutation p.A194V 0.33 deleterious_low_confidence(0.01) benign(0.068) TCGA-AA-3663-01 2 242688346 242688346 T C D2HGDH Intron 0.33 TCGA-AA-3663-01 2 24432688 24432688 G A ITSN2 Missense_Mutation p.T1491M 0.39 tolerated(0.15) unknown(0) TCGA-AA-3663-01 2 25966230 25966230 C T ASXL2 Silent p.A992A 0.53 TCGA-AA-3663-01 2 26405339 26405339 C T GAREML Intron 0.43 TCGA-AA-3663-01 2 26532110 26532110 G A GPR113 3'Flank 0.34 TCGA-AA-3663-01 2 26539293 26539294 - C GPR113 Frame_Shift_Ins p.N176Efs*75 0.26 TCGA-AA-3663-01 2 27305762 27305762 T G EMILIN1 Silent p.A441A 0.28 TCGA-AA-3663-01 2 27590347 27590347 C A EIF2B4 Missense_Mutation p.G308C 0.13 deleterious(0) benign(0.428) TCGA-AA-3663-01 2 27594202 27594202 C T SNX17 Missense_Mutation p.H44Y 0.34 tolerated(0.1) possibly_damaging(0.902) TCGA-AA-3663-01 2 27663746 27663746 C A NRBP1 Missense_Mutation p.P423H 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 2 27708371 27708371 C A IFT172 Splice_Site p.X14_splice 0.34 TCGA-AA-3663-01 2 27850242 27850242 A G CCDC121 Missense_Mutation p.V304A 0.29 tolerated(0.46) benign(0.003) TCGA-AA-3663-01 2 29052120 29052120 T C SPDYA Silent p.L163L 0.11 TCGA-AA-3663-01 2 29296951 29296951 C A C2orf71 Missense_Mutation p.E59D 0.12 deleterious(0.02) possibly_damaging(0.574) TCGA-AA-3663-01 2 29754971 29754971 G T ALK Missense_Mutation p.L322I 0.11 deleterious(0.04) benign(0.433) TCGA-AA-3663-01 2 29940475 29940475 G A ALK Silent p.S252S 0.29 TCGA-AA-3663-01 2 33359768 33359768 T - LTBP1 Intron 0.32 TCGA-AA-3663-01 2 37579949 37579949 C A QPCT Silent p.A46A 0.08 TCGA-AA-3663-01 2 38977279 38977279 C A SRSF7 Missense_Mutation p.R29M 0.35 deleterious(0.01) probably_damaging(0.962) TCGA-AA-3663-01 2 42488302 42488303 AA - EML4 Frame_Shift_Del p.K129Rfs*6 0.36 TCGA-AA-3663-01 2 43958673 43958673 G T PLEKHH2 Nonsense_Mutation p.G959* 0.29 TCGA-AA-3663-01 2 44508600 44508600 C T SLC3A1 Missense_Mutation p.R229W 0.42 deleterious(0.03) benign(0.12) TCGA-AA-3663-01 2 46711551 46711551 A C TMEM247 Missense_Mutation p.T216P 0.08 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-AA-3663-01 2 46770311 46770311 C A RHOQ Silent p.V42V 0.38 TCGA-AA-3663-01 2 47177653 47177653 T C TTC7A Silent p.H112H 0.45 TCGA-AA-3663-01 2 48818819 48818819 A G STON1-GTF2A1L Missense_Mutation p.Y653C 0.08 tolerated(0.71) benign(0.186) TCGA-AA-3663-01 2 54122811 54122811 A G PSME4 Missense_Mutation p.Y1251H 0.43 deleterious(0) probably_damaging(0.967) TCGA-AA-3663-01 2 55436806 55436806 G A CLHC1 Nonsense_Mutation p.R221* 0.37 TCGA-AA-3663-01 2 55490956 55490956 T G MTIF2 Silent p.R13R 0.38 TCGA-AA-3663-01 2 55599621 55599621 T - CCDC88A Frame_Shift_Del p.K123Nfs*26 0.31 TCGA-AA-3663-01 2 55804490 55804490 T C SMEK2 Missense_Mutation p.N523D 0.16 tolerated(0.28) benign(0.007) TCGA-AA-3663-01 2 5838192 5838192 T G SOX11 3'UTR 0.27 TCGA-AA-3663-01 2 58386920 58386920 T - FANCL Frame_Shift_Del p.M375Cfs*20 0.26 TCGA-AA-3663-01 2 60995611 60995611 C T PAPOLG Missense_Mutation p.P85S 0.47 deleterious(0.04) benign(0.121) TCGA-AA-3663-01 2 61336407 61336409 GAA - KIAA1841 In_Frame_Del p.E576del 0.36 TCGA-AA-3663-01 2 61492608 61492608 G T USP34 Missense_Mutation p.A1901D 0.13 deleterious(0) probably_damaging(0.994) TCGA-AA-3663-01 2 64863411 64863411 T C SERTAD2 Missense_Mutation p.T199A 0.14 tolerated(0.77) benign(0) TCGA-AA-3663-01 2 65540707 65540707 C T SPRED2 Silent p.L395L 0.43 TCGA-AA-3663-01 2 66739368 66739368 G A MEIS1 Missense_Mutation p.G277D 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 2 67631559 67631559 A G ETAA1 Missense_Mutation p.D582G 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 2 68273479 68273479 A - C1D Frame_Shift_Del p.W68Gfs*16 0.11 TCGA-AA-3663-01 2 70031679 70031679 G A ANXA4 Missense_Mutation p.A38T 0.38 tolerated(0.23) benign(0.162) TCGA-AA-3663-01 2 70188468 70188468 T C ASPRV1 Missense_Mutation p.H118R 0.28 deleterious(0.01) benign(0.03) TCGA-AA-3663-01 2 71839797 71839797 C - DYSF Frame_Shift_Del p.I1419Sfs*47 0.32 TCGA-AA-3663-01 2 73452939 73452942 TGTC - SMYD5 Frame_Shift_Del p.C376Pfs*14 0.38 TCGA-AA-3663-01 2 74273634 74273634 C T TET3 Missense_Mutation p.A62V 0.43 tolerated(0.07) probably_damaging(0.997) TCGA-AA-3663-01 2 74653449 74653450 - G RTKN Frame_Shift_Ins p.L538Pfs*42 0.21 TCGA-AA-3663-01 2 74657486 74657486 G A RTKN Silent p.R146R 0.10 TCGA-AA-3663-01 2 74688556 74688556 A G MOGS Missense_Mutation p.L787P 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 2 74708132 74708132 G A CCDC142 Missense_Mutation p.A440V 0.06 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 2 75104355 75104355 T C HK2 Missense_Mutation p.M313T 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-AA-3663-01 2 80530417 80530417 C T LRRTM1 Silent p.V176V 0.39 TCGA-AA-3663-01 2 84942737 84942737 G T DNAH6 Missense_Mutation p.E3199D 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3663-01 2 85786166 85786166 G A GGCX Missense_Mutation p.R83W 0.43 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 2 85838663 85838663 T C C2orf68 Intron 0.07 TCGA-AA-3663-01 2 88367420 88367420 A G SMYD1 Missense_Mutation p.T13A 0.41 tolerated(0.78) benign(0) TCGA-AA-3663-01 2 89156744 89156744 A G IGKC 3'UTR 0.38 TCGA-AA-3663-01 2 8940530 8940530 C A KIDINS220 Missense_Mutation p.Q300H 0.22 deleterious(0.03) benign(0.021) TCGA-AA-3663-01 2 95815791 95815791 G T ZNF514 Missense_Mutation p.L147I 0.09 tolerated(0.41) benign(0.007) TCGA-AA-3663-01 2 96459538 96459539 - C AC008268.2 RNA 0.10 TCGA-AA-3663-01 2 97271054 97271054 C T KANSL3 Intron 0.28 TCGA-AA-3663-01 2 97372840 97372840 C T LMAN2L 3'UTR 0.45 TCGA-AA-3663-01 2 97533632 97533632 C - SEMA4C 5'UTR 0.49 TCGA-AA-3663-01 2 98834432 98834432 G T VWA3B Nonsense_Mutation p.G654* 0.32 TCGA-AA-3663-01 2 99234645 99234645 A G UNC50 Missense_Mutation p.K220E 0.33 tolerated(0.05) benign(0.197) TCGA-AA-3663-01 2 99725896 99725896 G A TSGA10 Nonsense_Mutation p.R3* 0.37 TCGA-AA-3663-01 2 99901284 99901284 C A LYG1 Splice_Site p.X112_splice 0.31 TCGA-AA-3663-01 3 100378558 100378558 A G GPR128 Missense_Mutation p.N617S 0.07 tolerated(0.16) benign(0.016) TCGA-AA-3663-01 3 10102080 10102080 G A FANCD2 Missense_Mutation p.A587T 0.09 tolerated(0.2) benign(0.02) TCGA-AA-3663-01 3 10436233 10436233 T C ATP2B2 Intron 0.25 TCGA-AA-3663-01 3 108129520 108129520 G A MYH15 Missense_Mutation p.L1489F 0.37 deleterious(0.01) probably_damaging(1) TCGA-AA-3663-01 3 108175728 108175728 T C MYH15 Missense_Mutation p.I695V 0.25 tolerated(1) benign(0.002) TCGA-AA-3663-01 3 109031392 109031392 C A DPPA2 Missense_Mutation p.G61C 0.34 tolerated(0.21) benign(0.334) TCGA-AA-3663-01 3 111732358 111732358 C T TAGLN3 Missense_Mutation p.A187V 0.47 deleterious(0.04) benign(0.058) TCGA-AA-3663-01 3 112066613 112066613 G T CD200 Missense_Mutation p.K235N 0.42 deleterious(0.01) possibly_damaging(0.848) TCGA-AA-3663-01 3 112299856 112299856 T - SLC35A5 Frame_Shift_Del p.Y300Mfs*8 0.32 TCGA-AA-3663-01 3 112538718 112538718 G A CD200R1L Missense_Mutation p.A235V 0.44 tolerated(0.57) benign(0.005) TCGA-AA-3663-01 3 112998756 112998756 G A BOC Silent p.S702S 0.36 TCGA-AA-3663-01 3 113003693 113003693 A G BOC Missense_Mutation p.H984R 0.19 tolerated(0.16) benign(0.001) TCGA-AA-3663-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.21 TCGA-AA-3663-01 3 11600281 11600281 C T VGLL4 Missense_Mutation p.V214M 0.43 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 3 11600916 11600916 A G VGLL4 Missense_Mutation p.V170A 0.23 deleterious(0) possibly_damaging(0.854) TCGA-AA-3663-01 3 119582406 119582406 C T GSK3B Missense_Mutation p.R332H 0.42 tolerated(0.07) benign(0.007) TCGA-AA-3663-01 3 121126405 121126405 C T STXBP5L Missense_Mutation p.A992V 0.34 tolerated(1) benign(0.002) TCGA-AA-3663-01 3 121341766 121341766 C T FBXO40 Missense_Mutation p.T497I 0.45 deleterious(0.02) benign(0.271) TCGA-AA-3663-01 3 121345689 121345689 C T FBXO40 Missense_Mutation p.R688C 0.40 deleterious(0.01) possibly_damaging(0.828) TCGA-AA-3663-01 3 121350972 121350972 C T HCLS1 Missense_Mutation p.V434M 0.40 deleterious(0.05) possibly_damaging(0.86) TCGA-AA-3663-01 3 121825235 121825235 C T CD86 Silent p.Y197Y 0.09 TCGA-AA-3663-01 3 122087096 122087096 T - CCDC58 Frame_Shift_Del p.N84Tfs*13 0.22 TCGA-AA-3663-01 3 122869089 122869089 C - PDIA5 Frame_Shift_Del p.P386Rfs*26 0.32 TCGA-AA-3663-01 3 124117590 124117590 A C KALRN Missense_Mutation p.S738R 0.41 deleterious(0.02) unknown(0) TCGA-AA-3663-01 3 124352710 124352710 T G KALRN Silent p.G128G 0.19 TCGA-AA-3663-01 3 124951375 124951375 G T ZNF148 Missense_Mutation p.P732H 0.33 deleterious(0.04) possibly_damaging(0.888) TCGA-AA-3663-01 3 125855679 125855679 G A ALDH1L1 Silent p.L434L 0.09 TCGA-AA-3663-01 3 126142183 126142183 C - CCDC37 Frame_Shift_Del p.T369Rfs*36 0.31 TCGA-AA-3663-01 3 126724993 126724993 G A PLXNA1 Missense_Mutation p.V657I 0.45 tolerated(0.22) benign(0.005) TCGA-AA-3663-01 3 126739089 126739089 C A PLXNA1 Missense_Mutation p.L1314M 0.25 tolerated(0.27) probably_damaging(0.999) TCGA-AA-3663-01 3 129159181 129159181 C T IFT122 Missense_Mutation p.A3V 0.26 deleterious(0.01) benign(0.027) TCGA-AA-3663-01 3 129694799 129694799 G A TRH Missense_Mutation p.R47H 0.31 tolerated(0.28) probably_damaging(0.948) TCGA-AA-3663-01 3 129694832 129694832 A C TRH Missense_Mutation p.N58T 0.30 tolerated(0.24) benign(0.307) TCGA-AA-3663-01 3 130650882 130650882 G A ATP2C1 Missense_Mutation p.G79D 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 3 132226083 132226083 T C DNAJC13 Silent p.G1667G 0.09 TCGA-AA-3663-01 3 133672505 133672505 A G SLCO2A1 Splice_Site p.X242_splice 0.28 TCGA-AA-3663-01 3 133928546 133928546 G T RYK Nonsense_Mutation p.C192* 0.06 TCGA-AA-3663-01 3 137882678 137882678 G A DBR1 Missense_Mutation p.A246V 0.08 tolerated(0.09) benign(0.005) TCGA-AA-3663-01 3 138291762 138291762 G A CEP70 Missense_Mutation p.P3L 0.35 deleterious_low_confidence(0) possibly_damaging(0.6) TCGA-AA-3663-01 3 140401695 140401695 C T TRIM42 Missense_Mutation p.R245C 0.39 deleterious(0) possibly_damaging(0.874) TCGA-AA-3663-01 3 141163836 141163836 A G ZBTB38 Missense_Mutation p.Q869R 0.35 tolerated(0.43) benign(0.033) TCGA-AA-3663-01 3 141905051 141905051 G T GK5 Missense_Mutation p.P247H 0.17 deleterious(0.02) probably_damaging(0.928) TCGA-AA-3663-01 3 142172006 142172006 C T ATR Silent p.A2575A 0.35 TCGA-AA-3663-01 3 148597669 148597669 T C CPA3 Missense_Mutation p.V190A 0.12 deleterious(0.03) probably_damaging(1) TCGA-AA-3663-01 3 148714159 148714159 C G GYG1 Missense_Mutation p.L72V 0.40 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 3 149485106 149485107 - G ANKUB1 Frame_Shift_Ins p.Q448Pfs*25 0.28 TCGA-AA-3663-01 3 150299510 150299510 A - EIF2A Frame_Shift_Del p.I537Sfs*4 0.46 TCGA-AA-3663-01 3 150421593 150421593 C T FAM194A Silent p.E31E 0.32 TCGA-AA-3663-01 3 151046707 151046707 A G P2RY13 Missense_Mutation p.V46A 0.29 deleterious(0.02) possibly_damaging(0.489) TCGA-AA-3663-01 3 151155905 151155905 T C IGSF10 Silent p.K2148K 0.41 TCGA-AA-3663-01 3 151542501 151542501 A G AADAC Missense_Mutation p.Y161C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 3 153973330 153973330 A G ARHGEF26 3'UTR 0.40 TCGA-AA-3663-01 3 154024012 154024012 G A DHX36 Missense_Mutation p.L296F 0.12 deleterious(0.03) possibly_damaging(0.798) TCGA-AA-3663-01 3 155655457 155655457 C T GMPS Silent p.P686P 0.24 TCGA-AA-3663-01 3 160119856 160119856 A G SMC4 Missense_Mutation p.E98G 0.42 tolerated(0.11) benign(0.266) TCGA-AA-3663-01 3 160956528 160956528 T C NMD3 Missense_Mutation p.S223P 0.38 deleterious(0) possibly_damaging(0.902) TCGA-AA-3663-01 3 164792334 164792334 T C SI Silent p.E80E 0.40 TCGA-AA-3663-01 3 167189581 167189581 A - SERPINI2 Frame_Shift_Del p.F14Lfs*39 0.09 TCGA-AA-3663-01 3 167196703 167196703 T C WDR49 Missense_Mutation p.Q686R 0.14 tolerated(0.09) benign(0.282) TCGA-AA-3663-01 3 167223102 167223102 T - WDR49 Frame_Shift_Del p.K607Nfs*9 0.34 TCGA-AA-3663-01 3 167247001 167247001 C A WDR49 Nonsense_Mutation p.G397* 0.30 TCGA-AA-3663-01 3 169381319 169381319 C T MECOM 5'Flank 0.42 TCGA-AA-3663-01 3 169846791 169846791 C T PHC3 Missense_Mutation p.G490D 0.35 deleterious(0.01) possibly_damaging(0.503) TCGA-AA-3663-01 3 169998014 169998014 G T PRKCI Splice_Site p.X236_splice 0.35 TCGA-AA-3663-01 3 169998104 169998104 T A PRKCI Nonsense_Mutation p.Y265* 0.04 TCGA-AA-3663-01 3 170109002 170109002 G A SKIL Missense_Mutation p.C617Y 0.17 deleterious(0) probably_damaging(0.971) TCGA-AA-3663-01 3 170784437 170784437 C - TNIK Frame_Shift_Del p.V1263Cfs*3 0.28 TCGA-AA-3663-01 3 172050919 172050919 C G FNDC3B Missense_Mutation p.T532S 0.41 tolerated(1) benign(0.019) TCGA-AA-3663-01 3 175042020 175042020 T C NAALADL2 Silent p.C332C 0.07 TCGA-AA-3663-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.39 deleterious(0.04) probably_damaging(0.96) TCGA-AA-3663-01 3 178976922 178976922 T - LRRFIP1P1 RNA 0.32 TCGA-AA-3663-01 3 182871685 182871685 C T LAMP3 Missense_Mutation p.G182S 0.10 tolerated(1) benign(0.013) TCGA-AA-3663-01 3 184064362 184064362 G A CLCN2 3'UTR 0.46 TCGA-AA-3663-01 3 184064734 184064734 T C CLCN2 Missense_Mutation p.T831A 0.49 tolerated(1) possibly_damaging(0.507) TCGA-AA-3663-01 3 184298629 184298629 A G EPHB3 Missense_Mutation p.Y834C 0.12 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 3 184577784 184577784 T C VPS8 Silent p.D385D 0.39 TCGA-AA-3663-01 3 186917572 186917572 G A RTP1 Missense_Mutation p.R169H 0.41 tolerated(0.18) benign(0.003) TCGA-AA-3663-01 3 186917925 186917925 C T RTP1 3'UTR 0.35 TCGA-AA-3663-01 3 187444677 187444677 G A BCL6 Missense_Mutation p.A517V 0.40 tolerated(0.46) benign(0.003) TCGA-AA-3663-01 3 189598036 189598036 A G TP63 Intron 0.44 TCGA-AA-3663-01 3 190345194 190345194 A - IL1RAP Frame_Shift_Del p.K288Nfs*15 0.27 TCGA-AA-3663-01 3 190999982 190999982 A - UTS2B 5'UTR 0.47 TCGA-AA-3663-01 3 193366617 193366617 C T OPA1 Missense_Mutation p.L639F 0.39 deleterious(0.02) possibly_damaging(0.866) TCGA-AA-3663-01 3 194063091 194063091 G A CPN2 Missense_Mutation p.T114I 0.44 tolerated(0.11) benign(0.013) TCGA-AA-3663-01 3 194118298 194118298 G A GP5 Silent p.F238F 0.48 TCGA-AA-3663-01 3 195000049 195000049 A - ACAP2 3'UTR 0.27 TCGA-AA-3663-01 3 195460192 195460192 G T MUC20 3'UTR 0.25 TCGA-AA-3663-01 3 195475857 195475857 C T MUC4 Missense_Mutation p.G5317D 0.28 possibly_damaging(0.622) TCGA-AA-3663-01 3 195509649 195509649 A C MUC4 Silent p.L2934L 0.14 TCGA-AA-3663-01 3 195513204 195513204 G A MUC4 Silent p.D1749D 0.17 TCGA-AA-3663-01 3 196051103 196051103 C G TM4SF19 Intron 0.35 TCGA-AA-3663-01 3 196388244 196388244 C T NRROS Missense_Mutation p.A577V 0.41 tolerated(0.61) benign(0.015) TCGA-AA-3663-01 3 24185082 24185082 G A THRB Silent p.D216D 0.26 TCGA-AA-3663-01 3 25502712 25502712 G T RARB Missense_Mutation p.E62D 0.26 tolerated(0.06) benign(0.003) TCGA-AA-3663-01 3 25761597 25761597 C A NGLY1 Missense_Mutation p.S566I 0.41 deleterious(0.01) benign(0.14) TCGA-AA-3663-01 3 25792714 25792714 T C NGLY1 Missense_Mutation p.N178S 0.32 tolerated(0.27) benign(0.01) TCGA-AA-3663-01 3 2908453 2908453 A G CNTN4 Missense_Mutation p.I158V 0.32 tolerated(0.6) benign(0.093) TCGA-AA-3663-01 3 30898552 30898552 G C GADL1 Missense_Mutation p.L98V 0.38 deleterious(0.04) benign(0.181) TCGA-AA-3663-01 3 32746333 32746333 C A CNOT10 Missense_Mutation p.L110I 0.06 tolerated(0.11) possibly_damaging(0.753) TCGA-AA-3663-01 3 32932074 32932074 A G TRIM71 Missense_Mutation p.M460V 0.32 tolerated(0.47) benign(0.011) TCGA-AA-3663-01 3 37367839 37367839 C A GOLGA4 Missense_Mutation p.L1510I 0.32 probably_damaging(0.923) TCGA-AA-3663-01 3 38050063 38050063 G A PLCD1 Silent p.N617N 0.43 TCGA-AA-3663-01 3 38080801 38080801 C T DLEC1 Missense_Mutation p.P29S 0.45 tolerated_low_confidence(0.48) benign(0.027) TCGA-AA-3663-01 3 38151608 38151608 C A DLEC1 Silent p.G1093G 0.30 TCGA-AA-3663-01 3 38158733 38158733 T C DLEC1 Missense_Mutation p.L1447P 0.28 tolerated(0.32) benign(0.028) TCGA-AA-3663-01 3 38524874 38524874 A - ACVR2B 3'UTR 0.23 TCGA-AA-3663-01 3 38622488 38622488 T C SCN5A Silent p.S1054S 0.29 TCGA-AA-3663-01 3 40529660 40529660 T - ZNF619 Frame_Shift_Del p.Q596Rfs*35 0.27 TCGA-AA-3663-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.80 deleterious(0) possibly_damaging(0.844) TCGA-AA-3663-01 3 42264675 42264675 T G TRAK1 Missense_Mutation p.S770A 0.32 tolerated(0.86) benign(0.003) TCGA-AA-3663-01 3 425524 425524 A G CHL1 Missense_Mutation p.I734M 0.47 deleterious(0) probably_damaging(0.915) TCGA-AA-3663-01 3 42660602 42660602 G A NKTR Missense_Mutation p.G75D 0.22 deleterious_low_confidence(0) unknown(0) TCGA-AA-3663-01 3 42794114 42794114 T - CCDC13 Frame_Shift_Del p.T156Pfs*3 0.29 TCGA-AA-3663-01 3 42908559 42908559 C A ACKR2 3'UTR 0.32 TCGA-AA-3663-01 3 44685532 44685532 A - ZNF197 Frame_Shift_Del p.N972Tfs*66 0.25 TCGA-AA-3663-01 3 44943132 44943132 C A TGM4 Missense_Mutation p.N258K 0.26 tolerated(1) benign(0.002) TCGA-AA-3663-01 3 45800504 45800504 C T SLC6A20 Missense_Mutation p.R582H 0.23 tolerated(0.12) benign(0.005) TCGA-AA-3663-01 3 46414478 46414478 G A CCR5 Missense_Mutation p.A29T 0.37 tolerated(0.05) benign(0.167) TCGA-AA-3663-01 3 46560368 46560369 TT - LRRC2 3'UTR 0.57 TCGA-AA-3663-01 3 47364152 47364152 C T KLHL18 Nonsense_Mutation p.Q119* 0.35 TCGA-AA-3663-01 3 47460995 47460995 G T SCAP Missense_Mutation p.P588H 0.44 deleterious(0.04) benign(0.195) TCGA-AA-3663-01 3 47888077 47888077 C T DHX30 Silent p.H505H 0.94 TCGA-AA-3663-01 3 48624100 48624100 T C COL7A1 Missense_Mutation p.H1100R 0.17 unknown(0) TCGA-AA-3663-01 3 48731586 48731586 G A IP6K2 Intron 0.06 TCGA-AA-3663-01 3 49050892 49050892 C A WDR6 Missense_Mutation p.P672H 0.32 deleterious(0) probably_damaging(0.965) TCGA-AA-3663-01 3 49051179 49051179 G A WDR6 Missense_Mutation p.D768N 0.45 tolerated(0.45) benign(0.002) TCGA-AA-3663-01 3 49052306 49052306 A C WDR6 Missense_Mutation p.N1014T 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 3 49063954 49063954 T A IMPDH2 Missense_Mutation p.N303I 0.40 deleterious(0) possibly_damaging(0.588) TCGA-AA-3663-01 3 49137195 49137195 G A QARS Nonsense_Mutation p.R463* 0.35 TCGA-AA-3663-01 3 49158874 49158874 C T LAMB2 Missense_Mutation p.R1751Q 0.42 tolerated(0.54) possibly_damaging(0.716) TCGA-AA-3663-01 3 49161899 49161899 G A LAMB2 Missense_Mutation p.L1086F 0.32 tolerated(0.23) benign(0.309) TCGA-AA-3663-01 3 49721446 49721446 G A MST1 3'UTR 0.10 TCGA-AA-3663-01 3 49760143 49760143 A G GMPPB Silent p.C149C 0.08 TCGA-AA-3663-01 3 49877755 49877755 C A TRAIP Missense_Mutation p.A253S 0.25 tolerated(0.35) benign(0.019) TCGA-AA-3663-01 3 50251711 50251711 A G SLC38A3 RNA 0.08 TCGA-AA-3663-01 3 50326998 50326998 C - IFRD2 Frame_Shift_Del p.G284Afs*55 0.32 TCGA-AA-3663-01 3 50368020 50368020 G - RASSF1 Frame_Shift_Del p.*345Dfs*31 0.35 TCGA-AA-3663-01 3 50679204 50679204 T C MAPKAPK3 Splice_Site p.X142_splice 0.12 TCGA-AA-3663-01 3 51315156 51315156 C T DOCK3 Missense_Mutation p.R932W 0.41 deleterious(0) benign(0.437) TCGA-AA-3663-01 3 51367652 51367652 A G DOCK3 Silent p.L1162L 0.33 TCGA-AA-3663-01 3 51751674 51751674 G A GRM2 Missense_Mutation p.V796M 0.26 tolerated(0.14) possibly_damaging(0.824) TCGA-AA-3663-01 3 51975451 51975453 CTC - RRP9 In_Frame_Del p.E48del 0.33 TCGA-AA-3663-01 3 51979191 51979191 C T PARP3 Missense_Mutation p.P278L 0.42 deleterious(0.04) benign(0.219) TCGA-AA-3663-01 3 52159189 52159189 G T POC1A Silent p.A274A 0.38 TCGA-AA-3663-01 3 52429372 52429372 C A DNAH1 Missense_Mutation p.L3673I 0.32 probably_damaging(0.979) TCGA-AA-3663-01 3 52437235 52437235 G A BAP1 Silent p.V603V 0.32 TCGA-AA-3663-01 3 52724969 52724969 G T GNL3 Missense_Mutation p.K221N 0.09 tolerated(0.18) benign(0.374) TCGA-AA-3663-01 3 53213609 53213609 G A PRKCD Silent p.L44L 0.32 TCGA-AA-3663-01 3 55508449 55508449 G A WNT5A Silent p.R200R 0.05 TCGA-AA-3663-01 3 56675608 56675608 G A FAM208A Silent p.A796A 0.36 TCGA-AA-3663-01 3 56763554 56763554 T C ARHGEF3 Missense_Mutation p.N474S 0.10 tolerated(0.17) benign(0.069) TCGA-AA-3663-01 3 57488084 57488084 G T DNAH12 Missense_Mutation p.N403K 0.06 deleterious(0.01) possibly_damaging(0.66) TCGA-AA-3663-01 3 57902789 57902789 G T SLMAP Missense_Mutation p.K731N 0.12 tolerated_low_confidence(0.08) benign(0.088) TCGA-AA-3663-01 3 58132718 58132718 C T FLNB Missense_Mutation p.T1940I 0.37 deleterious(0.03) benign(0.294) TCGA-AA-3663-01 3 58739529 58739529 G A C3orf67 Missense_Mutation p.R516C 0.43 tolerated(0.21) benign(0.123) TCGA-AA-3663-01 3 61975335 61975335 T C PTPRG Missense_Mutation p.V76A 0.22 deleterious(0.04) benign(0.004) TCGA-AA-3663-01 3 62459865 62459865 T C CADPS Missense_Mutation p.M1154V 0.11 tolerated(0.9) benign(0.019) TCGA-AA-3663-01 3 64004637 64004637 G A PSMD6 Missense_Mutation p.R192C 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 3 65350559 65350559 T G MAGI1 Missense_Mutation p.T1087P 0.37 tolerated(0.1) probably_damaging(0.915) TCGA-AA-3663-01 3 65425603 65425603 T C MAGI1 Silent p.Q407Q 0.44 TCGA-AA-3663-01 3 74313463 74313463 A - CNTN3 3'UTR 0.23 TCGA-AA-3663-01 3 77089802 77089802 T C ROBO2 Intron 0.31 TCGA-AA-3663-01 3 77684125 77684125 A - ROBO2 Frame_Shift_Del p.K1306Nfs*20 0.28 TCGA-AA-3663-01 3 78666951 78666951 G A ROBO1 Silent p.N1372N 0.39 TCGA-AA-3663-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.35 TCGA-AA-3663-01 3 8932135 8932135 A G RAD18 Silent p.S441S 0.26 TCGA-AA-3663-01 3 93780328 93780328 C T DHFRL1 Missense_Mutation p.A10T 0.35 deleterious(0) probably_damaging(0.956) TCGA-AA-3663-01 3 97600065 97600065 T C CRYBG3 Splice_Site p.X436_splice 0.35 TCGA-AA-3663-01 3 97661024 97661024 C T MINA 3'UTR 0.45 TCGA-AA-3663-01 3 9776020 9776020 C T BRPF1 Missense_Mutation p.R66C 0.41 deleterious(0) probably_damaging(0.989) TCGA-AA-3663-01 3 98002046 98002047 - T OR5H2 Frame_Shift_Ins p.S108Ffs*19 0.31 TCGA-AA-3663-01 3 98299494 98299494 C A CPOX 3'UTR 0.38 TCGA-AA-3663-01 3 98506942 98506942 T - ST3GAL6 Frame_Shift_Del p.Y167Ifs*18 0.18 TCGA-AA-3663-01 3 9911696 9911696 G T CIDEC Missense_Mutation p.R152S 0.39 tolerated(0.11) benign(0.106) TCGA-AA-3663-01 3 9945748 9945748 T C IL17RE Missense_Mutation p.W61R 0.18 tolerated_low_confidence(0.36) benign(0) TCGA-AA-3663-01 3 9976245 9976245 T C CRELD1 Silent p.P41P 0.29 TCGA-AA-3663-01 4 1019286 1019287 - AC FGFRL1 3'UTR 0.36 TCGA-AA-3663-01 4 106157646 106157646 A T TET2 Silent p.T849T 0.38 TCGA-AA-3663-01 4 110223042 110223042 G A COL25A1 Missense_Mutation p.A45V 0.39 tolerated(0.2) benign(0.184) TCGA-AA-3663-01 4 110749167 110749167 G A RRH 5'UTR 0.41 TCGA-AA-3663-01 4 110972514 110972514 T C ELOVL6 Missense_Mutation p.K260E 0.27 tolerated(0.11) benign(0.128) TCGA-AA-3663-01 4 113333027 113333027 G T ALPK1 Silent p.A107A 0.43 TCGA-AA-3663-01 4 114177076 114177076 C T ANK2 Silent p.N392N 0.42 TCGA-AA-3663-01 4 114434510 114434510 G A CAMK2D Missense_Mutation p.T307I 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.639) TCGA-AA-3663-01 4 120446851 120446851 C A PDE5A Splice_Site p.X545_splice 0.42 TCGA-AA-3663-01 4 1208240 1208240 C T CTBP1 Missense_Mutation p.V262M 0.37 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 4 121739679 121739679 C T PRDM5 Missense_Mutation p.R160H 0.34 tolerated(0.54) benign(0) TCGA-AA-3663-01 4 122075716 122075716 C T TNIP3 Missense_Mutation p.R238H 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 4 122085334 122085334 T A TNIP3 Intron 0.24 TCGA-AA-3663-01 4 122602893 122602893 T A ANXA5 Silent p.V109V 0.07 TCGA-AA-3663-01 4 122723894 122723894 T - EXOSC9 Frame_Shift_Del p.F78Lfs*23 0.42 TCGA-AA-3663-01 4 123159502 123159502 C T KIAA1109 Missense_Mutation p.A1277V 0.31 benign(0.001) TCGA-AA-3663-01 4 123268840 123268840 C T KIAA1109 Silent p.N4345N 0.32 TCGA-AA-3663-01 4 123665875 123665875 T C BBS12 3'UTR 0.15 TCGA-AA-3663-01 4 124323033 124323033 A G SPRY1 Missense_Mutation p.H96R 0.12 tolerated(0.47) benign(0.154) TCGA-AA-3663-01 4 126241022 126241023 - G FAT4 Frame_Shift_Ins p.E1154Gfs*9 0.28 TCGA-AA-3663-01 4 126242716 126242716 C T FAT4 Missense_Mutation p.A1717V 0.39 benign(0.001) TCGA-AA-3663-01 4 126398385 126398385 A G FAT4 Silent p.G4123G 0.43 TCGA-AA-3663-01 4 126412705 126412705 C T FAT4 Missense_Mutation p.P4910S 0.25 benign(0.002) TCGA-AA-3663-01 4 128689917 128689918 - A SLC25A31 Frame_Shift_Ins p.P217Afs*28 0.31 TCGA-AA-3663-01 4 128715234 128715234 C T HSPA4L Missense_Mutation p.A37V 0.23 deleterious(0) possibly_damaging(0.551) TCGA-AA-3663-01 4 13485808 13485808 G - RAB28 5'UTR 0.33 TCGA-AA-3663-01 4 138442544 138442544 A G PCDH18 Missense_Mutation p.L1016S 0.13 deleterious(0) probably_damaging(0.941) TCGA-AA-3663-01 4 141578343 141578343 G A TBC1D9 Missense_Mutation p.P749S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3663-01 4 146030343 146030343 A T ABCE1 Missense_Mutation p.K116M 0.32 deleterious(0) possibly_damaging(0.882) TCGA-AA-3663-01 4 146031382 146031382 A G ABCE1 Missense_Mutation p.K178R 0.42 tolerated(0.35) benign(0.03) TCGA-AA-3663-01 4 146560523 146560523 C T MMAA Missense_Mutation p.L78F 0.16 tolerated(0.1) benign(0.03) TCGA-AA-3663-01 4 146824250 146824250 A G ZNF827 Missense_Mutation p.L54S 0.37 deleterious(0) probably_damaging(0.984) TCGA-AA-3663-01 4 147795877 147795877 C T TTC29 Missense_Mutation p.A264T 0.33 deleterious(0.02) possibly_damaging(0.831) TCGA-AA-3663-01 4 149041326 149041326 A - NR3C2 Frame_Shift_Del p.L875Cfs*4 0.28 TCGA-AA-3663-01 4 15067857 15067858 - T CPEB2 Frame_Shift_Ins p.C989Lfs*12 0.09 TCGA-AA-3663-01 4 151170726 151170726 G A DCLK2 Missense_Mutation p.A672T 0.32 tolerated(0.26) benign(0.003) TCGA-AA-3663-01 4 152069331 152069331 T C SH3D19 Missense_Mutation p.N329D 0.39 tolerated(0.78) benign(0.002) TCGA-AA-3663-01 4 154479428 154479428 C T KIAA0922 Missense_Mutation p.R190C 0.34 deleterious(0.04) probably_damaging(0.921) TCGA-AA-3663-01 4 155507279 155507279 G T FGA Silent p.V434V 0.30 TCGA-AA-3663-01 4 156634417 156634417 A C GUCY1A3 Missense_Mutation p.Q418H 0.40 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 4 156634561 156634561 G A GUCY1A3 Silent p.L466L 0.39 TCGA-AA-3663-01 4 15689435 15689435 C T FAM200B Missense_Mutation p.R279C 0.33 tolerated(0.19) benign(0) TCGA-AA-3663-01 4 158043480 158043480 A T GLRB Splice_Site p.X77_splice 0.11 TCGA-AA-3663-01 4 15850232 15850232 C T CD38 3'UTR 0.36 TCGA-AA-3663-01 4 160277036 160277036 G A RAPGEF2 Silent p.P1400P 0.39 TCGA-AA-3663-01 4 16504598 16504598 C T LDB2 Intron 0.40 TCGA-AA-3663-01 4 169086463 169086463 A G ANXA10 Missense_Mutation p.M156V 0.11 tolerated(1) benign(0.012) TCGA-AA-3663-01 4 169209394 169209394 G T DDX60 Missense_Mutation p.L372I 0.35 tolerated(0.08) possibly_damaging(0.696) TCGA-AA-3663-01 4 169382992 169382992 G A DDX60L Missense_Mutation p.T155M 0.33 deleterious(0) probably_damaging(0.981) TCGA-AA-3663-01 4 170913337 170913337 C T MFAP3L Missense_Mutation p.R141H 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3663-01 4 1739024 1739024 A G TACC3 Missense_Mutation p.E602G 0.39 tolerated(0.19) possibly_damaging(0.65) TCGA-AA-3663-01 4 174219377 174219377 T C GALNT7 Silent p.S359S 0.07 TCGA-AA-3663-01 4 177248345 177248345 T C SPCS3 Silent p.I109I 0.07 TCGA-AA-3663-01 4 183713859 183713859 A G TENM3 Missense_Mutation p.M2012V 0.48 deleterious(0) benign(0.067) TCGA-AA-3663-01 4 184431707 184431707 T C ING2 Missense_Mutation p.S149P 0.29 tolerated(0.16) possibly_damaging(0.543) TCGA-AA-3663-01 4 184931032 184931032 C T STOX2 Silent p.A347A 0.31 TCGA-AA-3663-01 4 185578447 185578447 T C PRIMPOL Silent p.A51A 0.41 TCGA-AA-3663-01 4 186263248 186263248 A C SNX25 Missense_Mutation p.N558T 0.06 tolerated(0.56) benign(0.082) TCGA-AA-3663-01 4 186353348 186353348 A - C4orf47 Frame_Shift_Del p.K106Sfs*5 0.25 TCGA-AA-3663-01 4 186544276 186544276 C T SORBS2 Silent p.L865L 0.07 TCGA-AA-3663-01 4 186545198 186545198 C T SORBS2 Missense_Mutation p.R558H 0.42 tolerated(0.66) probably_damaging(0.998) TCGA-AA-3663-01 4 187004317 187004317 A - TLR3 Frame_Shift_Del p.N494Mfs*15 0.30 TCGA-AA-3663-01 4 187629204 187629204 G T FAT1 Missense_Mutation p.A593D 0.29 probably_damaging(0.999) TCGA-AA-3663-01 4 188924197 188924197 G A ZFP42 Missense_Mutation p.G79D 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-AA-3663-01 4 20490522 20490522 G A SLIT2 Missense_Mutation p.G231D 0.06 deleterious(0.01) probably_damaging(1) TCGA-AA-3663-01 4 2934140 2934140 C T MFSD10 Missense_Mutation p.A211T 0.35 tolerated(0.08) benign(0.057) TCGA-AA-3663-01 4 3231709 3231709 C T HTT Silent p.D2735D 0.45 TCGA-AA-3663-01 4 3495216 3495216 C - DOK7 Frame_Shift_Del p.P503Lfs*62 0.26 TCGA-AA-3663-01 4 38698868 38698868 G A KLF3 Missense_Mutation p.R341H 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 4 39271685 39271685 A G WDR19 Missense_Mutation p.N1150D 0.12 tolerated(0.06) benign(0.29) TCGA-AA-3663-01 4 40044980 40044980 C T RP11-333E13.4 RNA 0.52 TCGA-AA-3663-01 4 40356305 40356305 A G CHRNA9 Missense_Mutation p.D403G 0.28 tolerated(0.49) benign(0.001) TCGA-AA-3663-01 4 40810821 40810821 T G NSUN7 Missense_Mutation p.H674Q 0.35 tolerated(0.19) benign(0.014) TCGA-AA-3663-01 4 420025 420025 G T ABCA11P RNA 0.39 TCGA-AA-3663-01 4 47900832 47900833 AC - NFXL1 Frame_Shift_Del p.V344Lfs*7 0.28 TCGA-AA-3663-01 4 48115261 48115261 C T TXK Missense_Mutation p.R46H 0.45 tolerated(0.16) benign(0.001) TCGA-AA-3663-01 4 48384871 48384871 C T SLAIN2 Silent p.S383S 0.07 TCGA-AA-3663-01 4 48553578 48553578 T C FRYL Missense_Mutation p.N1485D 0.31 tolerated(0.11) benign(0.015) TCGA-AA-3663-01 4 48583550 48583550 C T FRYL Missense_Mutation p.V687I 0.30 deleterious(0.01) benign(0.345) TCGA-AA-3663-01 4 499611 499611 A - PIGG Frame_Shift_Del p.R157Efs*2 0.29 TCGA-AA-3663-01 4 52862213 52862213 C A LRRC66 Missense_Mutation p.Q325H 0.42 tolerated(0.19) possibly_damaging(0.625) TCGA-AA-3663-01 4 54876128 54876132 AAAAC - CHIC2 3'UTR 0.50 TCGA-AA-3663-01 4 55161444 55161444 C T PDGFRA 3'UTR 0.37 TCGA-AA-3663-01 4 56308778 56308778 C T CLOCK Silent p.G642G 0.42 TCGA-AA-3663-01 4 57182051 57182051 C A KIAA1211 Missense_Mutation p.L795I 0.40 deleterious(0) possibly_damaging(0.567) TCGA-AA-3663-01 4 5785382 5785382 A G EVC Missense_Mutation p.Y556C 0.12 tolerated(0.16) benign(0.014) TCGA-AA-3663-01 4 5812101 5812101 C T EVC Missense_Mutation p.P940S 0.11 tolerated(0.41) benign(0.054) TCGA-AA-3663-01 4 6027988 6027989 - A JAKMIP1 Frame_Shift_Ins p.L821Ffs*? 0.31 TCGA-AA-3663-01 4 62936459 62936459 T C LPHN3 Missense_Mutation p.Y1415H 0.41 tolerated_low_confidence(0.18) probably_damaging(1) TCGA-AA-3663-01 4 678571 678571 G - MFSD7 Frame_Shift_Del p.T221Pfs*38 0.29 TCGA-AA-3663-01 4 6863092 6863092 G A KIAA0232 Missense_Mutation p.R328Q 0.37 tolerated(0.12) probably_damaging(0.916) TCGA-AA-3663-01 4 69512589 69512589 C A UGT2B15 3'UTR 0.34 TCGA-AA-3663-01 4 71114771 71114771 G A CSN3 Missense_Mutation p.M48I 0.12 tolerated(1) benign(0) TCGA-AA-3663-01 4 71114937 71114937 C A CSN3 Missense_Mutation p.P104T 0.36 tolerated(0.42) benign(0.007) TCGA-AA-3663-01 4 71275429 71275429 T C PROL1 Silent p.P128P 0.43 TCGA-AA-3663-01 4 71508720 71508720 G T ENAM Missense_Mutation p.R526M 0.39 deleterious(0) probably_damaging(0.952) TCGA-AA-3663-01 4 71701911 71701911 A G GRSF1 Missense_Mutation p.S160P 0.31 deleterious(0) probably_damaging(0.991) TCGA-AA-3663-01 4 74313371 74313372 - A AFP Frame_Shift_Ins p.N348Kfs*10 0.33 TCGA-AA-3663-01 4 75937746 75937746 A G PARM1 Missense_Mutation p.D52G 0.28 tolerated(0.14) benign(0.015) TCGA-AA-3663-01 4 76522346 76522346 T - CDKL2 Frame_Shift_Del p.A366Lfs*23 0.30 TCGA-AA-3663-01 4 79385733 79385733 C T FRAS1 Missense_Mutation p.T2342I 0.46 possibly_damaging(0.759) TCGA-AA-3663-01 4 79387483 79387483 G - FRAS1 Frame_Shift_Del p.V2385Sfs*37 0.23 TCGA-AA-3663-01 4 80247154 80247154 G A NAA11 5'UTR 0.40 TCGA-AA-3663-01 4 80328700 80328700 G A GK2 Missense_Mutation p.L219F 0.30 deleterious(0) possibly_damaging(0.833) TCGA-AA-3663-01 4 81952589 81952589 C T BMP3 Nonsense_Mutation p.Q51* 0.48 TCGA-AA-3663-01 4 83582161 83582161 C T SCD5 Intron 0.26 TCGA-AA-3663-01 4 84015709 84015709 A G PLAC8 3'UTR 0.45 TCGA-AA-3663-01 4 85661490 85661490 C T WDFY3 Missense_Mutation p.R2105Q 0.32 deleterious(0) possibly_damaging(0.849) TCGA-AA-3663-01 4 87643423 87643423 C T PTPN13 Missense_Mutation p.R482W 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 4 88415423 88415423 T C SPARCL1 Missense_Mutation p.R177G 0.24 tolerated(0.21) benign(0.001) TCGA-AA-3663-01 4 88415521 88415521 C T SPARCL1 Missense_Mutation p.G144D 0.26 tolerated_low_confidence(1) benign(0) TCGA-AA-3663-01 4 88979140 88979140 C T PKD2 Missense_Mutation p.T635I 0.38 deleterious(0) possibly_damaging(0.879) TCGA-AA-3663-01 4 95201761 95201761 G A SMARCAD1 Missense_Mutation p.A815T 0.47 deleterious(0) possibly_damaging(0.743) TCGA-AA-3663-01 4 96761470 96761470 G A PDHA2 Missense_Mutation p.A57T 0.42 deleterious(0.02) benign(0.038) TCGA-AA-3663-01 4 9785145 9785145 G A DRD5 3'UTR 0.33 TCGA-AA-3663-01 4 9785349 9785349 G C DRD5 3'UTR 0.32 TCGA-AA-3663-01 4 9785421 9785421 G T DRD5 3'UTR 0.19 TCGA-AA-3663-01 5 1074697 1074698 - G SLC12A7 Frame_Shift_Ins p.H686Pfs*230 0.35 TCGA-AA-3663-01 5 10748352 10748352 T C DAP Silent p.K29K 0.09 TCGA-AA-3663-01 5 107521947 107521947 A G FBXL17 Missense_Mutation p.L539P 0.08 deleterious(0.01) probably_damaging(0.957) TCGA-AA-3663-01 5 112437449 112437449 C T MCC Missense_Mutation p.R462Q 0.22 deleterious(0.02) probably_damaging(0.975) TCGA-AA-3663-01 5 114483066 114483066 C T TRIM36 Silent p.P108P 0.31 TCGA-AA-3663-01 5 115782366 115782366 G - SEMA6A Frame_Shift_Del p.K1013Nfs*11 0.17 TCGA-AA-3663-01 5 122729149 122729149 A G CEP120 Missense_Mutation p.F219L 0.39 deleterious(0) probably_damaging(0.983) TCGA-AA-3663-01 5 125904008 125904008 A G ALDH7A1 Missense_Mutation p.F272L 0.12 deleterious(0.04) probably_damaging(0.914) TCGA-AA-3663-01 5 126141296 126141296 T G LMNB1 Missense_Mutation p.L184V 0.08 deleterious(0) probably_damaging(0.951) TCGA-AA-3663-01 5 131820190 131820190 C A IRF1 Splice_Site p.X240_splice 0.10 TCGA-AA-3663-01 5 132039269 132039269 G A KIF3A Missense_Mutation p.A424V 0.40 tolerated(0.27) benign(0.113) TCGA-AA-3663-01 5 1320786 1320786 G A CLPTM1L Missense_Mutation p.R493W 0.48 deleterious(0) probably_damaging(0.99) TCGA-AA-3663-01 5 132232258 132232258 A - AFF4 Frame_Shift_Del p.R689Gfs*28 0.21 TCGA-AA-3663-01 5 133724105 133724108 GTAA - UBE2B Splice_Site p.X110_splice 0.38 TCGA-AA-3663-01 5 133984638 133984638 C - SEC24A 5'UTR 0.38 TCGA-AA-3663-01 5 134195062 134195062 C A C5orf24 3'UTR 0.40 TCGA-AA-3663-01 5 134235405 134235405 A G TXNDC15 3'UTR 0.08 TCGA-AA-3663-01 5 137803102 137803102 C T EGR1 Missense_Mutation p.R322C 0.35 deleterious(0) unknown(0) TCGA-AA-3663-01 5 137846306 137846306 A G ETF1 Missense_Mutation p.L344P 0.35 tolerated(0.09) possibly_damaging(0.519) TCGA-AA-3663-01 5 13793731 13793731 A G DNAH5 Missense_Mutation p.M2706T 0.07 benign(0.149) TCGA-AA-3663-01 5 138860834 138860834 G A TMEM173 Silent p.Y107Y 0.25 TCGA-AA-3663-01 5 13911494 13911494 C T DNAH5 Splice_Site p.X548_splice 0.49 TCGA-AA-3663-01 5 139506060 139506060 A - IGIP 5'UTR 0.26 TCGA-AA-3663-01 5 139928556 139928556 C - EIF4EBP3 Frame_Shift_Del p.C59Afs*23 0.29 TCGA-AA-3663-01 5 140167127 140167127 C T PCDHA1 Silent p.L418L 0.40 TCGA-AA-3663-01 5 140188073 140188073 C T PCDHA4 Missense_Mutation p.S434L 0.46 deleterious_low_confidence(0.04) possibly_damaging(0.783) TCGA-AA-3663-01 5 140202740 140202740 C T PCDHA5 Silent p.T460T 0.40 TCGA-AA-3663-01 5 140208169 140208169 A G PCDHA6 Missense_Mutation p.N165D 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3663-01 5 140230447 140230447 C A PCDHA9 Silent p.P789P 0.07 TCGA-AA-3663-01 5 140236160 140236161 - T PCDHA10 Frame_Shift_Ins p.V178Cfs*3 0.25 TCGA-AA-3663-01 5 140307064 140307064 G A PCDHAC1 Missense_Mutation p.R196H 0.32 tolerated(0.05) benign(0.088) TCGA-AA-3663-01 5 140482553 140482553 T G PCDHB3 Missense_Mutation p.F774V 0.27 tolerated_low_confidence(0.13) benign(0.012) TCGA-AA-3663-01 5 140531039 140531039 C A PCDHB6 Missense_Mutation p.L401M 0.43 deleterious(0) possibly_damaging(0.846) TCGA-AA-3663-01 5 140531421 140531421 G A PCDHB6 Missense_Mutation p.R528H 0.05 tolerated(0.23) benign(0.017) TCGA-AA-3663-01 5 140580690 140580690 C - PCDHB11 Frame_Shift_Del p.T450Pfs*92 0.28 TCGA-AA-3663-01 5 140683225 140683225 C T SLC25A2 Missense_Mutation p.A70T 0.32 deleterious(0) probably_damaging(0.994) TCGA-AA-3663-01 5 140683342 140683342 C T SLC25A2 Missense_Mutation p.D31N 0.38 deleterious(0) probably_damaging(0.987) TCGA-AA-3663-01 5 140718617 140718617 A G PCDHGA2 Missense_Mutation p.R27G 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3663-01 5 140746123 140746123 C T PCDHGA5 Silent p.G742G 0.38 TCGA-AA-3663-01 5 140768295 140768295 A G PCDHGB4 Missense_Mutation p.S282G 0.08 tolerated(0.45) benign(0.139) TCGA-AA-3663-01 5 140768431 140768431 C T PCDHGB4 Missense_Mutation p.A327V 0.39 deleterious(0.04) possibly_damaging(0.842) TCGA-AA-3663-01 5 140774537 140774537 G T PCDHGA8 Missense_Mutation p.W719C 0.29 deleterious_low_confidence(0.01) benign(0.378) TCGA-AA-3663-01 5 140812198 140812198 C T PCDHGA12 Silent p.G624G 0.42 TCGA-AA-3663-01 5 140953602 140953602 A G DIAPH1 Silent p.S605S 0.37 TCGA-AA-3663-01 5 141046035 141046035 G - ARAP3 Frame_Shift_Del p.P843Qfs*72 0.37 TCGA-AA-3663-01 5 142693601 142693601 T C NR3C1 Silent p.G439G 0.37 TCGA-AA-3663-01 5 145888762 145888762 G T TCERG1 Missense_Mutation p.A1017S 0.35 tolerated(0.28) unknown(0) TCGA-AA-3663-01 5 146657687 146657687 T C STK32A Missense_Mutation p.V18A 0.34 deleterious(0) benign(0.341) TCGA-AA-3663-01 5 147516562 147516563 - T SPINK5 3'UTR 0.24 TCGA-AA-3663-01 5 149265923 149265924 - T PDE6A Frame_Shift_Ins p.R582Afs*19 0.29 TCGA-AA-3663-01 5 149416421 149416421 A C HMGXB3 Missense_Mutation p.T736P 0.31 deleterious(0) probably_damaging(0.99) TCGA-AA-3663-01 5 149449491 149449491 G A CSF1R Silent p.C485C 0.34 TCGA-AA-3663-01 5 149449585 149449585 T C CSF1R Missense_Mutation p.Y454C 0.47 tolerated(0.11) possibly_damaging(0.704) TCGA-AA-3663-01 5 150407641 150407641 A G GPX3 Missense_Mutation p.I211V 0.25 deleterious(0.03) probably_damaging(0.973) TCGA-AA-3663-01 5 151170616 151170616 C T G3BP1 Missense_Mutation p.A115V 0.41 tolerated(0.08) benign(0.243) TCGA-AA-3663-01 5 152870346 152870346 G T GRIA1 5'Flank 0.33 TCGA-AA-3663-01 5 153435191 153435191 T - MFAP3 3'UTR 0.50 TCGA-AA-3663-01 5 154185462 154185462 G A LARP1 Silent p.T779T 0.39 TCGA-AA-3663-01 5 156566273 156566273 C T MED7 Missense_Mutation p.R57H 0.42 deleterious(0.01) probably_damaging(0.952) TCGA-AA-3663-01 5 156589818 156589818 G A FAM71B Silent p.S486S 0.14 TCGA-AA-3663-01 5 158524063 158524063 G T EBF1 Missense_Mutation p.F70L 0.28 deleterious(0.02) possibly_damaging(0.843) TCGA-AA-3663-01 5 158630639 158630639 T C RNF145 Missense_Mutation p.K26R 0.17 tolerated_low_confidence(0.55) benign(0) TCGA-AA-3663-01 5 159776263 159776263 T C C1QTNF2 Missense_Mutation p.N302S 0.46 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 5 161116328 161116328 T C GABRA6 Missense_Mutation p.L172P 0.31 deleterious(0.01) probably_damaging(1) TCGA-AA-3663-01 5 16465410 16465410 C T ZNF622 Missense_Mutation p.S122N 0.31 tolerated(0.48) benign(0.004) TCGA-AA-3663-01 5 16701937 16701937 G A MYO10 Missense_Mutation p.T856M 0.38 tolerated(0.14) benign(0.002) TCGA-AA-3663-01 5 167622287 167622287 C T TENM2 Missense_Mutation p.R963C 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-AA-3663-01 5 167933825 167933825 A G RARS Silent p.L445L 0.38 TCGA-AA-3663-01 5 167986150 167986151 CT - PANK3 Frame_Shift_Del p.R316Sfs*38 0.22 TCGA-AA-3663-01 5 169025524 169025524 T C SPDL1 Silent p.G359G 0.09 TCGA-AA-3663-01 5 169291394 169291394 C T FAM196B Silent p.E497E 0.06 TCGA-AA-3663-01 5 169423104 169423104 C T DOCK2 Missense_Mutation p.A1003V 0.33 deleterious(0) probably_damaging(0.988) TCGA-AA-3663-01 5 169461546 169461546 C T DOCK2 Missense_Mutation p.T1204I 0.37 tolerated(0.14) possibly_damaging(0.724) TCGA-AA-3663-01 5 170222215 170222215 T C GABRP Missense_Mutation p.Y82H 0.10 deleterious(0) possibly_damaging(0.899) TCGA-AA-3663-01 5 172517840 172517840 T C CREBRF Missense_Mutation p.Y220H 0.41 tolerated_low_confidence(0.47) benign(0.002) TCGA-AA-3663-01 5 174938520 174938520 A G SFXN1 Silent p.A167A 0.35 TCGA-AA-3663-01 5 176016387 176016387 C T CDHR2 Missense_Mutation p.A1022V 0.43 deleterious(0.02) probably_damaging(0.986) TCGA-AA-3663-01 5 176297433 176297433 C T UNC5A Missense_Mutation p.R262W 0.34 deleterious(0) probably_damaging(0.994) TCGA-AA-3663-01 5 176471523 176471523 C T ZNF346 Missense_Mutation p.T169I 0.40 deleterious(0.03) benign(0.027) TCGA-AA-3663-01 5 176562260 176562260 T C NSD1 Silent p.T52T 0.29 TCGA-AA-3663-01 5 176721069 176721069 A G NSD1 Missense_Mutation p.T2234A 0.10 tolerated_low_confidence(0.12) benign(0.003) TCGA-AA-3663-01 5 177633734 177633734 T C HNRNPAB Missense_Mutation p.V127A 0.08 deleterious(0.05) benign(0.294) TCGA-AA-3663-01 5 178391794 178391794 G A ZNF454 Missense_Mutation p.C130Y 0.12 tolerated(1) benign(0) TCGA-AA-3663-01 5 178556975 178556975 C T ADAMTS2 Silent p.T805T 0.44 TCGA-AA-3663-01 5 178559313 178559313 T - ADAMTS2 Splice_Site p.X737_splice 0.29 TCGA-AA-3663-01 5 179004135 179004135 G T RUFY1 Missense_Mutation p.K296N 0.36 tolerated(0.14) benign(0.075) TCGA-AA-3663-01 5 179320419 179320419 G A TBC1D9B Missense_Mutation p.A209V 0.40 deleterious(0) possibly_damaging(0.881) TCGA-AA-3663-01 5 179991567 179991567 A C CNOT6 Missense_Mutation p.D155A 0.36 deleterious(0.02) possibly_damaging(0.839) TCGA-AA-3663-01 5 180218494 180218494 C T MGAT1 3'UTR 0.40 TCGA-AA-3663-01 5 21501887 21501887 G A GUSBP1 RNA 0.49 TCGA-AA-3663-01 5 224481 224481 G A SDHA Missense_Mutation p.A53T 0.40 tolerated_low_confidence(0.65) benign(0.001) TCGA-AA-3663-01 5 32601324 32601324 T - SUB1 3'UTR 0.35 TCGA-AA-3663-01 5 35644502 35644502 C T SPEF2 Missense_Mutation p.R154W 0.36 deleterious(0.02) possibly_damaging(0.828) TCGA-AA-3663-01 5 36122383 36122383 A G LMBRD2 Silent p.F373F 0.40 TCGA-AA-3663-01 5 37125349 37125349 A C C5orf42 Missense_Mutation p.N2931K 0.06 tolerated(0.16) benign(0.44) TCGA-AA-3663-01 5 40681354 40681354 G - PTGER4 Frame_Shift_Del p.G88Afs*26 0.29 TCGA-AA-3663-01 5 41058185 41058185 T C MROH2B Missense_Mutation p.I246V 0.07 tolerated(0.34) benign(0.016) TCGA-AA-3663-01 5 41154075 41154075 C T C6 Silent p.V709V 0.40 TCGA-AA-3663-01 5 43161584 43161584 G A ZNF131 Missense_Mutation p.S202N 0.12 tolerated(0.53) benign(0.006) TCGA-AA-3663-01 5 476461 476461 C T SLC9A3 Silent p.T641T 0.10 TCGA-AA-3663-01 5 54566275 54566275 G A DHX29 Missense_Mutation p.R1012C 0.41 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 5 54922453 54922453 A T SLC38A9 Missense_Mutation p.F519I 0.37 deleterious(0.05) probably_damaging(0.987) TCGA-AA-3663-01 5 60083247 60083247 T - ELOVL7 5'UTR 0.28 TCGA-AA-3663-01 5 60188677 60188677 C A ERCC8 Intron 0.45 TCGA-AA-3663-01 5 60455818 60455818 G A SMIM15 Missense_Mutation p.R61C 0.33 tolerated(0.2) benign(0.003) TCGA-AA-3663-01 5 61877233 61877233 A G LRRC70 3'UTR 0.41 TCGA-AA-3663-01 5 64082401 64082402 - A CWC27 Frame_Shift_Ins p.E185Rfs*19 0.23 TCGA-AA-3663-01 5 65054567 65054567 A G NLN Missense_Mutation p.Y72C 0.36 deleterious(0.02) possibly_damaging(0.647) TCGA-AA-3663-01 5 66478986 66478986 A G CD180 Missense_Mutation p.L562P 0.25 tolerated(0.27) possibly_damaging(0.487) TCGA-AA-3663-01 5 6738840 6738840 T C PAPD7 Silent p.T45T 0.19 TCGA-AA-3663-01 5 69337832 69337832 C A SERF1B 3'UTR 0.36 TCGA-AA-3663-01 5 70818299 70818299 C T BDP1 Silent p.N1725N 0.37 TCGA-AA-3663-01 5 71492791 71492791 A C MAP1B Silent p.S1203S 0.43 TCGA-AA-3663-01 5 74018216 74018216 T C GFM2 Silent p.L733L 0.30 TCGA-AA-3663-01 5 75587122 75587122 G T SV2C Missense_Mutation p.R405M 0.27 deleterious(0) possibly_damaging(0.875) TCGA-AA-3663-01 5 76028360 76028361 TT - F2R Frame_Shift_Del p.F104Cfs*54 0.23 TCGA-AA-3663-01 5 7695918 7695918 C T ADCY2 Missense_Mutation p.P308L 0.25 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 5 77511985 77511985 C T AP3B1 Missense_Mutation p.R227H 0.28 deleterious(0) probably_damaging(0.934) TCGA-AA-3663-01 5 78610467 78610467 C - JMY Frame_Shift_Del p.P819Lfs*69 0.36 TCGA-AA-3663-01 5 79030576 79030576 A G CMYA5 Silent p.L1996L 0.09 TCGA-AA-3663-01 5 79032771 79032771 T G CMYA5 Missense_Mutation p.L2728R 0.31 unknown(0) TCGA-AA-3663-01 5 80160684 80160684 A - MSH3 Frame_Shift_Del p.N1020Ifs*40 0.31 TCGA-AA-3663-01 5 80628425 80628425 C A ACOT12 Splice_Site p.X421_splice 0.46 TCGA-AA-3663-01 5 83402591 83402591 G T EDIL3 Missense_Mutation p.A176D 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 5 89914937 89914937 G T GPR98 Missense_Mutation p.R131M 0.36 benign(0.032) TCGA-AA-3663-01 5 90012284 90012284 C T GPR98 Missense_Mutation p.A3062V 0.37 probably_damaging(0.935) TCGA-AA-3663-01 5 90073806 90073806 A G GPR98 Silent p.T4204T 0.40 TCGA-AA-3663-01 5 93798267 93798267 C T KIAA0825 Missense_Mutation p.V691I 0.32 tolerated(1) benign(0.034) TCGA-AA-3663-01 5 94818215 94818215 T - TTC37 Frame_Shift_Del p.T1392Qfs*24 0.23 TCGA-AA-3663-01 5 94878927 94878927 T - TTC37 Frame_Shift_Del p.A66Lfs*4 0.29 TCGA-AA-3663-01 5 95735707 95735707 G A PCSK1 Silent p.S460S 0.23 TCGA-AA-3663-01 5 95748196 95748196 T C PCSK1 Splice_Site p.X237_splice 0.39 TCGA-AA-3663-01 5 96332182 96332182 A - LNPEP Frame_Shift_Del p.I501Yfs*12 0.15 TCGA-AA-3663-01 6 100404011 100404011 G A MCHR2 Missense_Mutation p.H5Y 0.33 tolerated(0.98) benign(0) TCGA-AA-3663-01 6 102503255 102503255 G A GRIK2 Missense_Mutation p.E788K 0.39 tolerated(0.66) possibly_damaging(0.541) TCGA-AA-3663-01 6 106543515 106543515 A G PRDM1 Missense_Mutation p.Y106C 0.36 deleterious(0) benign(0.366) TCGA-AA-3663-01 6 106553111 106553111 C T PRDM1 Missense_Mutation p.T359M 0.31 tolerated(0.1) possibly_damaging(0.587) TCGA-AA-3663-01 6 10726190 10726190 C A TMEM14C Missense_Mutation p.L50M 0.40 deleterious(0.03) probably_damaging(0.976) TCGA-AA-3663-01 6 107361230 107361230 G T C6orf203 Missense_Mutation p.R94M 0.40 deleterious(0.01) benign(0.424) TCGA-AA-3663-01 6 107475758 107475758 C A PDSS2 3'UTR 0.09 TCGA-AA-3663-01 6 108985061 108985062 CT - FOXO3 Frame_Shift_Del p.S344Afs*27 0.27 TCGA-AA-3663-01 6 109477095 109477095 T - CEP57L1 Intron 0.28 TCGA-AA-3663-01 6 109767002 109767004 TCT - MICAL1 In_Frame_Del p.E881del 0.27 TCGA-AA-3663-01 6 11104869 11104869 C T ERVFRD-1 Silent p.A225A 0.35 TCGA-AA-3663-01 6 116911483 116911483 A G RWDD1 Missense_Mutation p.K155E 0.25 deleterious(0) probably_damaging(0.95) TCGA-AA-3663-01 6 116987864 116987864 C T ZUFSP Silent p.E164E 0.36 TCGA-AA-3663-01 6 117708959 117708959 A G ROS1 Silent p.G666G 0.11 TCGA-AA-3663-01 6 117890973 117890973 T C DCBLD1 3'UTR 0.70 TCGA-AA-3663-01 6 118887294 118887294 C - CEP85L Frame_Shift_Del p.E143Sfs*6 0.32 TCGA-AA-3663-01 6 126080388 126080388 C T HEY2 Missense_Mutation p.R152W 0.34 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 6 127768233 127768233 A C KIAA0408 Missense_Mutation p.C411G 0.09 tolerated(0.28) benign(0.001) TCGA-AA-3663-01 6 127771388 127771388 G T KIAA0408 Missense_Mutation p.P82Q 0.36 deleterious(0.05) probably_damaging(0.932) TCGA-AA-3663-01 6 128291226 128291226 A - PTPRK 3'UTR 0.38 TCGA-AA-3663-01 6 128388794 128388794 G - PTPRK Frame_Shift_Del p.P676Rfs*39 0.25 TCGA-AA-3663-01 6 130761753 130761753 T - TMEM200A Frame_Shift_Del p.I66Ffs*2 0.09 TCGA-AA-3663-01 6 132031750 132031750 G A CTAGE9 Silent p.S136S 0.41 TCGA-AA-3663-01 6 132270414 132270414 T C CTGF Missense_Mutation p.D347G 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-AA-3663-01 6 132860290 132860290 A G TAAR9 Missense_Mutation p.T288A 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3663-01 6 134312296 134312296 G T SLC2A12 Silent p.T617T 0.30 TCGA-AA-3663-01 6 135286427 135286427 A G HBS1L Missense_Mutation p.I682T 0.48 deleterious(0) possibly_damaging(0.482) TCGA-AA-3663-01 6 13621001 13621001 A - NOL7 Frame_Shift_Del p.N240Mfs*14 0.17 TCGA-AA-3663-01 6 138754440 138754440 C A NHSL1 Nonsense_Mutation p.G352* 0.45 TCGA-AA-3663-01 6 139495657 139495657 C T HECA Missense_Mutation p.A483V 0.11 deleterious(0) probably_damaging(0.994) TCGA-AA-3663-01 6 139564084 139564084 G - TXLNB Frame_Shift_Del p.P545Lfs*2 0.24 TCGA-AA-3663-01 6 13980017 13980017 T C RNF182 3'UTR 0.09 TCGA-AA-3663-01 6 144263627 144263627 T C PLAGL1 Missense_Mutation p.H109R 0.08 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 6 144803526 144803526 T C UTRN Splice_Site p.X1229_splice 0.30 TCGA-AA-3663-01 6 146956658 146956658 A - ADGB Frame_Shift_Del p.S76Afs*20 0.31 TCGA-AA-3663-01 6 148864963 148864963 G T SASH1 Missense_Mutation p.R786M 0.26 deleterious_low_confidence(0) possibly_damaging(0.472) TCGA-AA-3663-01 6 148865063 148865063 C T SASH1 Silent p.C819C 0.35 TCGA-AA-3663-01 6 151152079 151152079 G C PLEKHG1 Missense_Mutation p.S611T 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 6 152265355 152265355 C A ESR1 Missense_Mutation p.Q270K 0.07 tolerated(0.25) benign(0.028) TCGA-AA-3663-01 6 152462450 152462450 G A SYNE1 Silent p.G8378G 0.07 TCGA-AA-3663-01 6 152469351 152469351 G A SYNE1 Missense_Mutation p.R8269W 0.14 probably_damaging(0.973) TCGA-AA-3663-01 6 152642890 152642890 G A SYNE1 Missense_Mutation p.T5350I 0.34 possibly_damaging(0.548) TCGA-AA-3663-01 6 152675903 152675903 T - SYNE1 Frame_Shift_Del p.K3606Sfs*5 0.19 TCGA-AA-3663-01 6 152757201 152757201 C A SYNE1 Missense_Mutation p.Q1395H 0.47 possibly_damaging(0.836) TCGA-AA-3663-01 6 153332776 153332776 C A RGS17 Missense_Mutation p.R189M 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 6 154412417 154412417 C T OPRM1 Missense_Mutation p.A418V 0.39 tolerated(0.27) probably_damaging(0.99) TCGA-AA-3663-01 6 155148344 155148344 C - SCAF8 Frame_Shift_Del p.P705Lfs*6 0.26 TCGA-AA-3663-01 6 158323000 158323001 AG - SNX9 Frame_Shift_Del p.E182Vfs*3 0.29 TCGA-AA-3663-01 6 160103478 160103478 A - SOD2 3'UTR 0.23 TCGA-AA-3663-01 6 160328055 160328055 C T MAS1 Missense_Mutation p.A23V 0.07 tolerated(0.26) benign(0.007) TCGA-AA-3663-01 6 160412338 160412338 G A IGF2R Missense_Mutation p.R91H 0.45 tolerated(0.11) benign(0) TCGA-AA-3663-01 6 160505010 160505010 A G IGF2R Missense_Mutation p.I1954M 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-AA-3663-01 6 162683629 162683629 C A PARK2 Nonsense_Mutation p.G114* 0.09 TCGA-AA-3663-01 6 163987695 163987695 T - QKI Intron 0.28 TCGA-AA-3663-01 6 166796367 166796367 C T MPC1 5'UTR 0.12 TCGA-AA-3663-01 6 168352521 168352521 C T MLLT4 Missense_Mutation p.T1489M 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3663-01 6 168376705 168376705 T C RP3-470B24.5 RNA 0.20 TCGA-AA-3663-01 6 168710921 168710921 G A DACT2 Silent p.G195G 0.25 TCGA-AA-3663-01 6 20109859 20109859 A - MBOAT1 Frame_Shift_Del p.L444Wfs*20 0.10 TCGA-AA-3663-01 6 21598720 21598720 G - SOX4 3'UTR 0.30 TCGA-AA-3663-01 6 24847899 24847900 - G FAM65B Frame_Shift_Ins p.D367Rfs*28 0.41 TCGA-AA-3663-01 6 25915771 25915771 T G SLC17A2 Intron 0.38 TCGA-AA-3663-01 6 26108312 26108312 T C HIST1H1T Missense_Mutation p.T4A 0.09 deleterious(0.01) benign(0.089) TCGA-AA-3663-01 6 26158372 26158372 A G HIST1H2BD 5'Flank 0.23 TCGA-AA-3663-01 6 26217496 26217496 A G HIST1H2AE Silent p.L98L 0.08 TCGA-AA-3663-01 6 26377247 26377247 G A BTN3A2 3'UTR 0.29 TCGA-AA-3663-01 6 26393096 26393096 C - BTN2A2 Frame_Shift_Del p.I493Sfs*20 0.21 TCGA-AA-3663-01 6 2749569 2749569 T G MYLK4 5'UTR 0.39 TCGA-AA-3663-01 6 27799303 27799303 C T HIST1H4K Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3663-01 6 28227519 28227520 GA - NKAPL Frame_Shift_Del p.R127Dfs*8 0.42 TCGA-AA-3663-01 6 28269935 28269935 T C PGBD1 Silent p.D768D 0.42 TCGA-AA-3663-01 6 28294059 28294059 G T ZSCAN31 Missense_Mutation p.H369N 0.43 deleterious(0) probably_damaging(0.997) TCGA-AA-3663-01 6 28963809 28963809 T - ZNF311 Frame_Shift_Del p.T324Pfs*83 0.29 TCGA-AA-3663-01 6 29275135 29275135 G A OR14J1 Silent p.V223V 0.29 TCGA-AA-3663-01 6 29524058 29524058 T - UBD Frame_Shift_Del p.I33Sfs*25 0.28 TCGA-AA-3663-01 6 29527615 29527615 C T UBD 5'UTR 0.33 TCGA-AA-3663-01 6 30139635 30139635 G A TRIM15 Missense_Mutation p.A303T 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-AA-3663-01 6 3019826 3019826 G A NQO2 Silent p.R211R 0.44 TCGA-AA-3663-01 6 30228255 30228255 G A HCG17 Intron 0.38 TCGA-AA-3663-01 6 30547770 30547770 A C ABCF1 Missense_Mutation p.K184N 0.12 deleterious_low_confidence(0.02) benign(0.241) TCGA-AA-3663-01 6 30570342 30570342 C - PPP1R10 Frame_Shift_Del p.G695Vfs*222 0.40 TCGA-AA-3663-01 6 30610714 30610714 C - ATAT1 Frame_Shift_Del p.P288Hfs*31 0.28 TCGA-AA-3663-01 6 30681753 30681753 A G MDC1 Missense_Mutation p.L115P 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 6 31598395 31598395 G T PRRC2A Missense_Mutation p.S761I 0.30 benign(0.403) TCGA-AA-3663-01 6 31608571 31608571 G - BAG6 Frame_Shift_Del p.Q948Sfs*85 0.28 TCGA-AA-3663-01 6 31681550 31681550 A G LY6G6E Missense_Mutation p.C14R 0.41 deleterious(0.01) possibly_damaging(0.449) TCGA-AA-3663-01 6 31785632 31785632 T C HSPA1A 3'UTR 0.41 TCGA-AA-3663-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.26 TCGA-AA-3663-01 6 31939178 31939178 T C DXO Missense_Mutation p.Y92C 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 6 32047125 32047125 C T RNA5SP206 5'Flank 0.35 TCGA-AA-3663-01 6 32095932 32095932 G A ATF6B Missense_Mutation p.T18I 0.26 deleterious(0.01) possibly_damaging(0.77) TCGA-AA-3663-01 6 32116953 32116953 C A PRRT1 3'UTR 0.37 TCGA-AA-3663-01 6 32170147 32170147 C - NOTCH4 Frame_Shift_Del p.G1154Afs*150 0.10 TCGA-AA-3663-01 6 32181562 32181562 G A NOTCH4 Silent p.G741G 0.35 TCGA-AA-3663-01 6 33053652 33053652 G A HLA-DPB1 Missense_Mutation p.R248K 0.33 tolerated(0.28) benign(0.001) TCGA-AA-3663-01 6 33243417 33243417 C T RPS18 Intron 0.31 TCGA-AA-3663-01 6 33264456 33264456 T C RGL2 Missense_Mutation p.D113G 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 6 33284753 33284753 G - ZBTB22 5'UTR 0.28 TCGA-AA-3663-01 6 34498324 34498324 G - PACSIN1 Frame_Shift_Del p.A334Rfs*2 0.28 TCGA-AA-3663-01 6 34855781 34855781 C A TAF11 5'UTR 0.32 TCGA-AA-3663-01 6 35048769 35048769 A G ANKS1A Splice_Site p.X849_splice 0.37 TCGA-AA-3663-01 6 350955 350955 C T DUSP22 3'UTR 0.17 TCGA-AA-3663-01 6 35448112 35448112 G A TEAD3 Missense_Mutation p.R103W 0.29 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 6 35543610 35543610 C T FKBP5 3'UTR 0.09 TCGA-AA-3663-01 6 36189965 36189965 G T BRPF3 Missense_Mutation p.R1035L 0.15 tolerated(0.18) possibly_damaging(0.669) TCGA-AA-3663-01 6 36291093 36291093 C T C6orf222 Missense_Mutation p.R483Q 0.35 tolerated(0.11) possibly_damaging(0.776) TCGA-AA-3663-01 6 37448783 37448783 C A CMTR1 3'UTR 0.35 TCGA-AA-3663-01 6 3850818 3850818 C T FAM50B Missense_Mutation p.A258V 0.30 deleterious(0) possibly_damaging(0.788) TCGA-AA-3663-01 6 38790769 38790769 T C DNAH8 Missense_Mutation p.Y1010H 0.39 probably_damaging(0.91) TCGA-AA-3663-01 6 39159081 39159081 A G KCNK5 Missense_Mutation p.L362P 0.30 tolerated(0.07) probably_damaging(0.914) TCGA-AA-3663-01 6 39283980 39283980 C - KCNK16 Intron 0.30 TCGA-AA-3663-01 6 39836620 39836620 C T DAAM2 Nonsense_Mutation p.R262* 0.33 TCGA-AA-3663-01 6 4052975 4052975 A - PRPF4B Frame_Shift_Del p.K780Nfs*13 0.19 TCGA-AA-3663-01 6 41011793 41011793 G A TSPO2 Missense_Mutation p.V144M 0.33 tolerated(0.53) benign(0.343) TCGA-AA-3663-01 6 41034974 41034974 T C OARD1 3'UTR 0.34 TCGA-AA-3663-01 6 41557780 41557781 - C FOXP4 Frame_Shift_Ins p.T413Dfs*32 0.20 TCGA-AA-3663-01 6 41654810 41654810 T C TFEB Intron 0.24 TCGA-AA-3663-01 6 42231069 42231069 T C TRERF1 Missense_Mutation p.M625V 0.31 tolerated(0.05) benign(0.019) TCGA-AA-3663-01 6 42237408 42237408 C A TRERF1 5'UTR 0.20 TCGA-AA-3663-01 6 42580011 42580011 A G UBR2 Missense_Mutation p.S323G 0.11 tolerated(0.1) benign(0) TCGA-AA-3663-01 6 43008690 43008690 C T CUL7 Missense_Mutation p.G1341S 0.23 deleterious(0.01) benign(0.441) TCGA-AA-3663-01 6 43008716 43008716 C T CUL7 Missense_Mutation p.C1332Y 0.37 tolerated(0.9) benign(0.026) TCGA-AA-3663-01 6 43109747 43109748 - G PTK7 Frame_Shift_Ins p.D626Gfs*36 0.37 TCGA-AA-3663-01 6 43173750 43173750 A G CUL9 Missense_Mutation p.Y1600C 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 6 43267400 43267400 T C SLC22A7 Missense_Mutation p.V180A 0.33 deleterious(0) possibly_damaging(0.803) TCGA-AA-3663-01 6 43307490 43307490 T C ZNF318 Missense_Mutation p.I1416V 0.29 benign(0.023) TCGA-AA-3663-01 6 43646321 43646321 A G MRPS18A Silent p.N62N 0.05 TCGA-AA-3663-01 6 43749743 43749743 C T VEGFA Missense_Mutation p.P379L 0.35 deleterious(0.02) possibly_damaging(0.758) TCGA-AA-3663-01 6 44329728 44329728 C T SPATS1 Silent p.Y191Y 0.39 TCGA-AA-3663-01 6 45870987 45870987 C T CLIC5 Silent p.V357V 0.34 TCGA-AA-3663-01 6 46644514 46644514 A G SLC25A27 3'UTR 0.25 TCGA-AA-3663-01 6 46660069 46660069 G T TDRD6 Missense_Mutation p.G1402C 0.36 tolerated(0.16) benign(0.292) TCGA-AA-3663-01 6 46806841 46806841 A G MEP1A Missense_Mutation p.I737V 0.40 tolerated(0.58) benign(0.005) TCGA-AA-3663-01 6 51887694 51887694 G T PKHD1 Missense_Mutation p.P1762Q 0.44 deleterious(0) probably_damaging(0.986) TCGA-AA-3663-01 6 52269946 52269946 T C PAQR8 3'UTR 0.42 TCGA-AA-3663-01 6 53989498 53989498 C - MLIP Frame_Shift_Del p.P151Qfs*14 0.11 TCGA-AA-3663-01 6 55113551 55113551 T C HCRTR2 Missense_Mutation p.V113A 0.29 deleterious(0.01) benign(0.219) TCGA-AA-3663-01 6 56047328 56047328 C A COL21A1 Splice_Site p.X30_splice 0.40 TCGA-AA-3663-01 6 70669928 70669928 A - COL19A1 Frame_Shift_Del p.K327Rfs*36 0.11 TCGA-AA-3663-01 6 71011709 71011709 C T COL9A1 Missense_Mutation p.R28H 0.16 unknown(0) TCGA-AA-3663-01 6 72960941 72960941 G A RIMS1 Silent p.A856A 0.36 TCGA-AA-3663-01 6 74063574 74063574 A G DPPA5 Splice_Site p.X98_splice 0.52 TCGA-AA-3663-01 6 74228276 74228276 A C EEF1A1 Missense_Mutation p.V277G 0.26 deleterious_low_confidence(0.01) benign(0.007) TCGA-AA-3663-01 6 75806985 75806985 C T COL12A1 Missense_Mutation p.G2854D 0.38 probably_damaging(1) TCGA-AA-3663-01 6 76412634 76412634 A G SENP6 Missense_Mutation p.I854M 0.09 tolerated(0.22) benign(0.008) TCGA-AA-3663-01 6 82924289 82924289 A G IBTK Missense_Mutation p.V620A 0.34 deleterious(0) benign(0.099) TCGA-AA-3663-01 6 83845556 83845556 A G DOPEY1 Missense_Mutation p.E1030G 0.42 deleterious(0.04) benign(0.04) TCGA-AA-3663-01 6 84233537 84233537 G A PRSS35 Missense_Mutation p.G126D 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 6 87724934 87724934 C A HTR1E 5'UTR 0.29 TCGA-AA-3663-01 6 87964920 87964921 AG - ZNF292 Frame_Shift_Del p.R527Gfs*8 0.27 TCGA-AA-3663-01 6 87966543 87966543 A G ZNF292 Missense_Mutation p.K1066E 0.46 tolerated(0.11) possibly_damaging(0.867) TCGA-AA-3663-01 6 90340549 90340549 T - ANKRD6 Frame_Shift_Del p.F672Lfs*34 0.30 TCGA-AA-3663-01 6 90367953 90367953 G A MDN1 Missense_Mutation p.A5053V 0.33 unknown(0) TCGA-AA-3663-01 6 90491171 90491171 T G MDN1 Missense_Mutation p.E530D 0.19 benign(0.023) TCGA-AA-3663-01 6 94120600 94120600 C T EPHA7 Missense_Mutation p.A151T 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 6 96656179 96656179 A G FUT9 3'UTR 0.42 TCGA-AA-3663-01 6 96659999 96659999 G A FUT9 3'UTR 0.31 TCGA-AA-3663-01 6 97609896 97609896 A G MMS22L Silent p.L1123L 0.29 TCGA-AA-3663-01 6 99285361 99285361 T - POU3F2 3'UTR 0.09 TCGA-AA-3663-01 6 99930673 99930673 T - USP45 Frame_Shift_Del p.G268Dfs*38 0.31 TCGA-AA-3663-01 7 100161514 100161514 C T AGFG2 Missense_Mutation p.T410I 0.48 tolerated(0.05) benign(0.157) TCGA-AA-3663-01 7 100491616 100491616 G A ACHE Missense_Mutation p.P80S 0.35 deleterious(0.03) possibly_damaging(0.618) TCGA-AA-3663-01 7 100679065 100679065 A G MUC17 Silent p.P1456P 0.42 TCGA-AA-3663-01 7 100731777 100731777 G A TRIM56 Missense_Mutation p.R395Q 0.19 tolerated(1) benign(0) TCGA-AA-3663-01 7 101183309 101183309 A G COL26A1 Missense_Mutation p.R195G 0.33 deleterious(0.03) possibly_damaging(0.688) TCGA-AA-3663-01 7 102427894 102427894 A G FAM185A Silent p.K348K 0.41 TCGA-AA-3663-01 7 102574421 102574421 G A LRRC17 Missense_Mutation p.A21T 0.09 tolerated(0.96) benign(0.001) TCGA-AA-3663-01 7 104749677 104749677 T C KMT2E Splice_Site p.X1252_splice 0.41 TCGA-AA-3663-01 7 104782806 104782806 T C SRPK2 Missense_Mutation p.I398V 0.42 tolerated(1) benign(0.055) TCGA-AA-3663-01 7 107234540 107234540 T - BCAP29 Frame_Shift_Del p.W114Gfs*2 0.25 TCGA-AA-3663-01 7 107399549 107399549 G T CBLL1 Missense_Mutation p.G468C 0.48 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 7 112102232 112102232 G T IFRD1 Missense_Mutation p.E265D 0.44 tolerated(1) benign(0.039) TCGA-AA-3663-01 7 112112339 112112339 A - IFRD1 Frame_Shift_Del p.K371Nfs*35 0.14 TCGA-AA-3663-01 7 117431644 117431644 G A CTTNBP2 Nonsense_Mutation p.R536* 0.37 TCGA-AA-3663-01 7 121623807 121623807 A G PTPRZ1 Silent p.T236T 0.28 TCGA-AA-3663-01 7 121769476 121769476 A - AASS Frame_Shift_Del p.F109Sfs*5 0.25 TCGA-AA-3663-01 7 122303604 122303604 C T CADPS2 Missense_Mutation p.R158Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 7 123349206 123349206 A G WASL Silent p.G63G 0.38 TCGA-AA-3663-01 7 127342544 127342544 T C SND1 Silent p.D215D 0.22 TCGA-AA-3663-01 7 128412659 128412659 C T OPN1SW Missense_Mutation p.D328N 0.43 tolerated(0.12) benign(0.003) TCGA-AA-3663-01 7 128415535 128415535 G A OPN1SW Missense_Mutation p.R104C 0.41 tolerated(0.22) benign(0.022) TCGA-AA-3663-01 7 128483620 128483620 G A FLNC Missense_Mutation p.A934T 0.39 deleterious(0) possibly_damaging(0.502) TCGA-AA-3663-01 7 128488729 128488729 C T FLNC Silent p.D1565D 0.11 TCGA-AA-3663-01 7 134850459 134850459 G T TMEM140 3'UTR 0.35 TCGA-AA-3663-01 7 135301842 135301842 T C NUP205 Silent p.R1179R 0.37 TCGA-AA-3663-01 7 135613932 135613932 A - MTPN 3'UTR 0.31 TCGA-AA-3663-01 7 138279285 138279285 A - SVOPL 3'Flank 0.33 TCGA-AA-3663-01 7 138447111 138447111 C T ATP6V0A4 Silent p.V162V 0.49 TCGA-AA-3663-01 7 138602636 138602636 G T KIAA1549 Missense_Mutation p.P579Q 0.45 deleterious(0.02) benign(0.23) TCGA-AA-3663-01 7 138603524 138603524 A - KIAA1549 Frame_Shift_Del p.L283* 0.19 TCGA-AA-3663-01 7 139299109 139299109 T C HIPK2 Missense_Mutation p.Q638R 0.38 deleterious(0) benign(0.04) TCGA-AA-3663-01 7 141765163 141765163 G T MGAM Missense_Mutation p.G1505W 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 7 142605755 142605755 A G TRPV5 Silent p.R705R 0.33 TCGA-AA-3663-01 7 142651037 142651037 C T KEL Missense_Mutation p.A311T 0.15 deleterious(0) probably_damaging(0.99) TCGA-AA-3663-01 7 143098648 143098648 C A EPHA1 Missense_Mutation p.Q67H 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 7 143554237 143554237 A G FAM115A Silent p.P904P 0.18 TCGA-AA-3663-01 7 143882920 143882920 C A CTAGE4 Missense_Mutation p.P775H 0.21 deleterious(0) probably_damaging(0.986) TCGA-AA-3663-01 7 1482094 1482094 G T MICALL2 Missense_Mutation p.P482H 0.26 tolerated(0.28) possibly_damaging(0.512) TCGA-AA-3663-01 7 148709043 148709043 T C PDIA4 Missense_Mutation p.T292A 0.33 tolerated(0.81) benign(0) TCGA-AA-3663-01 7 148802439 148802439 C T ZNF425 Missense_Mutation p.R175Q 0.42 tolerated(0.3) benign(0) TCGA-AA-3663-01 7 149129568 149129568 G A ZNF777 Missense_Mutation p.R599C 0.29 deleterious(0) possibly_damaging(0.845) TCGA-AA-3663-01 7 150164279 150164279 T C GIMAP8 Missense_Mutation p.Y165H 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3663-01 7 150174550 150174550 G A GIMAP8 Silent p.A560A 0.22 TCGA-AA-3663-01 7 150390306 150390306 G A GIMAP2 Missense_Mutation p.S311N 0.44 deleterious(0.02) benign(0.107) TCGA-AA-3663-01 7 150707226 150707226 C T NOS3 Missense_Mutation p.R846W 0.31 deleterious(0.02) benign(0.409) TCGA-AA-3663-01 7 150710405 150710405 C A NOS3 Missense_Mutation p.Q1065K 0.39 tolerated(1) benign(0.018) TCGA-AA-3663-01 7 150710878 150710878 C T NOS3 Missense_Mutation p.R1108W 0.44 deleterious(0.01) benign(0.431) TCGA-AA-3663-01 7 150731470 150731470 G C ABCB8 Missense_Mutation p.E173D 0.38 tolerated(0.38) benign(0.03) TCGA-AA-3663-01 7 150745982 150745982 A G ASIC3 Missense_Mutation p.T4A 0.35 tolerated(0.47) benign(0.033) TCGA-AA-3663-01 7 150814833 150814833 C T AGAP3 Silent p.S225S 0.38 TCGA-AA-3663-01 7 151877813 151877813 T C KMT2C Missense_Mutation p.T2378A 0.07 benign(0.005) TCGA-AA-3663-01 7 151880081 151880081 T G KMT2C Missense_Mutation p.E1748A 0.37 probably_damaging(0.998) TCGA-AA-3663-01 7 1538467 1538467 G T INTS1 Missense_Mutation p.L387M 0.37 deleterious(0) probably_damaging(0.953) TCGA-AA-3663-01 7 154596662 154596662 G T DPP6 Missense_Mutation p.R512L 0.37 deleterious(0) probably_damaging(0.979) TCGA-AA-3663-01 7 155299713 155299713 A G CNPY1 Splice_Site p.X81_splice 0.20 TCGA-AA-3663-01 7 155530818 155530818 A G RBM33 Silent p.P486P 0.38 TCGA-AA-3663-01 7 156436485 156436485 G A RNF32 Intron 0.10 TCGA-AA-3663-01 7 156451243 156451243 A - RNF32 Frame_Shift_Del p.K223Nfs*35 0.25 TCGA-AA-3663-01 7 158529739 158529739 C A ESYT2 Missense_Mutation p.S827I 0.38 deleterious(0.05) benign(0.026) TCGA-AA-3663-01 7 17843045 17843045 A - SNX13 Frame_Shift_Del p.F741Lfs*6 0.28 TCGA-AA-3663-01 7 20698773 20698773 G C ABCB5 Intron 0.50 TCGA-AA-3663-01 7 21945195 21945195 C T CDCA7L Missense_Mutation p.E326K 0.42 tolerated(0.09) benign(0.071) TCGA-AA-3663-01 7 24901295 24901295 C A OSBPL3 Missense_Mutation p.G322C 0.11 tolerated(0.05) benign(0.027) TCGA-AA-3663-01 7 25194698 25194698 C T C7orf31 Missense_Mutation p.R176H 0.38 tolerated(0.16) probably_damaging(0.939) TCGA-AA-3663-01 7 29160655 29160655 A G CPVL Missense_Mutation p.V8A 0.28 tolerated(0.54) benign(0.002) TCGA-AA-3663-01 7 2959063 2959064 CG - CARD11 Frame_Shift_Del p.R818Gfs*8 0.30 TCGA-AA-3663-01 7 30655664 30655664 C A GARS Missense_Mutation p.A395D 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 7 30705242 30705242 T A CRHR2 Missense_Mutation p.D137V 0.28 deleterious(0.04) benign(0.197) TCGA-AA-3663-01 7 33061678 33061678 T C NT5C3A Missense_Mutation p.E119G 0.12 tolerated(0.11) benign(0.019) TCGA-AA-3663-01 7 38505084 38505084 G A AMPH Silent p.T244T 0.36 TCGA-AA-3663-01 7 40172821 40172821 C T MPLKIP Missense_Mutation p.R126H 0.36 tolerated(0.89) probably_damaging(0.923) TCGA-AA-3663-01 7 40229194 40229194 G T SUGCT Splice_Site p.X128_splice 0.24 TCGA-AA-3663-01 7 43622850 43622850 C T STK17A Missense_Mutation p.P3L 0.23 deleterious_low_confidence(0) unknown(0) TCGA-AA-3663-01 7 43917470 43917470 C A URGCP Missense_Mutation p.R531L 0.08 deleterious(0.05) possibly_damaging(0.547) TCGA-AA-3663-01 7 44012817 44012817 A G POLR2J4 RNA 0.40 TCGA-AA-3663-01 7 44080789 44080789 G A DBNL 5'Flank 0.45 TCGA-AA-3663-01 7 44189613 44189613 C T GCK Silent p.G179G 0.36 TCGA-AA-3663-01 7 44873984 44873984 A G H2AFV 3'UTR 0.17 TCGA-AA-3663-01 7 45222903 45222903 C - RAMP3 Frame_Shift_Del p.P115Qfs*8 0.27 TCGA-AA-3663-01 7 45753337 45753337 T G ADCY1 Missense_Mutation p.F1035V 0.36 deleterious(0.01) benign(0.41) TCGA-AA-3663-01 7 47479092 47479092 T C TNS3 Missense_Mutation p.N48S 0.39 tolerated(0.11) benign(0.226) TCGA-AA-3663-01 7 47886665 47886665 G T PKD1L1 Silent p.A1655A 0.38 TCGA-AA-3663-01 7 47937590 47937590 C T PKD1L1 Missense_Mutation p.A756T 0.33 deleterious(0) probably_damaging(0.954) TCGA-AA-3663-01 7 48068434 48068434 G A SUN3 Silent p.D34D 0.36 TCGA-AA-3663-01 7 4830997 4830997 C T AP5Z1 Missense_Mutation p.A802V 0.33 deleterious(0.04) possibly_damaging(0.462) TCGA-AA-3663-01 7 48356827 48356827 A C ABCA13 Missense_Mutation p.K3311N 0.14 probably_damaging(1) TCGA-AA-3663-01 7 4900105 4900105 T - PAPOLB Frame_Shift_Del p.K445Sfs*28 0.29 TCGA-AA-3663-01 7 49842403 49842403 G A VWC2 Missense_Mutation p.E265K 0.33 deleterious(0) probably_damaging(0.996) TCGA-AA-3663-01 7 50686896 50686896 C T GRB10 Missense_Mutation p.A250T 0.30 deleterious(0) benign(0.3) TCGA-AA-3663-01 7 5097358 5097358 G T RBAK-RBAKDN Missense_Mutation p.Q62H 0.07 deleterious(0.02) probably_damaging(0.975) TCGA-AA-3663-01 7 5401547 5401547 G A TNRC18 Nonsense_Mutation p.Q1505* 0.09 TCGA-AA-3663-01 7 5521531 5521531 C T FBXL18 Missense_Mutation p.V678I 0.38 deleterious(0.05) benign(0.037) TCGA-AA-3663-01 7 55249200 55249200 G T EGFR Intron 0.08 TCGA-AA-3663-01 7 5568790 5568790 A G ACTB Splice_Site p.X121_splice 0.07 TCGA-AA-3663-01 7 57529401 57529401 G T ZNF716 Nonsense_Mutation p.E412* 0.36 TCGA-AA-3663-01 7 6048964 6048964 A G AIMP2 5'UTR 0.07 TCGA-AA-3663-01 7 6066469 6066469 T A EIF2AK1 Missense_Mutation p.R552W 0.11 deleterious(0) probably_damaging(0.977) TCGA-AA-3663-01 7 6204577 6204578 - T CYTH3 Frame_Shift_Ins p.*400Ifs*10 0.23 TCGA-AA-3663-01 7 6464410 6464410 G A DAGLB Silent p.V371V 0.34 TCGA-AA-3663-01 7 65444457 65444457 A G GUSB Missense_Mutation p.V218A 0.39 deleterious(0) probably_damaging(0.986) TCGA-AA-3663-01 7 65444884 65444884 G A GUSB Silent p.V137V 0.44 TCGA-AA-3663-01 7 6628284 6628284 C T ZDHHC4 Silent p.L260L 0.38 TCGA-AA-3663-01 7 70255370 70255370 G A AUTS2 Silent p.P1056P 0.37 TCGA-AA-3663-01 7 71142270 71142270 G A WBSCR17 Silent p.P493P 0.33 TCGA-AA-3663-01 7 72658306 72658306 G A GTF2IRD2P1 RNA 0.04 TCGA-AA-3663-01 7 72865198 72865198 A G BAZ1B Missense_Mutation p.C1187R 0.28 deleterious(0) probably_damaging(0.95) TCGA-AA-3663-01 7 74005168 74005168 C G GTF2IRD1 Missense_Mutation p.L837V 0.45 deleterious(0.05) benign(0.168) TCGA-AA-3663-01 7 75044466 75044466 C A POM121C 3'Flank 0.34 TCGA-AA-3663-01 7 75045908 75045908 T C POM121C 3'Flank 0.28 TCGA-AA-3663-01 7 780543 780543 C T HEATR2 Silent p.L290L 0.09 TCGA-AA-3663-01 7 81594931 81594931 A T CACNA2D1 Missense_Mutation p.N851K 0.38 deleterious(0) possibly_damaging(0.904) TCGA-AA-3663-01 7 82595752 82595752 G A PCLO Nonsense_Mutation p.Q1118* 0.36 TCGA-AA-3663-01 7 87507388 87507389 - A DBF4 Frame_Shift_Ins p.N25Kfs*11 0.35 TCGA-AA-3663-01 7 88963203 88963203 T G ZNF804B Missense_Mutation p.L303V 0.08 tolerated(0.12) benign(0.139) TCGA-AA-3663-01 7 89790590 89790590 C T STEAP1 Nonsense_Mutation p.R186* 0.30 TCGA-AA-3663-01 7 900016 900016 G T SUN1 Missense_Mutation p.E592D 0.12 deleterious(0) benign(0.044) TCGA-AA-3663-01 7 90042541 90042541 G A CLDN12 Missense_Mutation p.G184D 0.31 deleterious(0.05) probably_damaging(1) TCGA-AA-3663-01 7 90898033 90898033 A T FZD1 3'UTR 0.47 TCGA-AA-3663-01 7 91794245 91794245 C A LRRD1 Missense_Mutation p.S91I 0.10 tolerated_low_confidence(0.3) benign(0.002) TCGA-AA-3663-01 7 91794576 91794576 T - LRRD1 5'UTR 0.25 TCGA-AA-3663-01 7 92020506 92020506 C T ANKIB1 Silent p.D693D 0.28 TCGA-AA-3663-01 7 97933623 97933623 G - BAIAP2L1 Frame_Shift_Del p.P436Hfs*60 0.29 TCGA-AA-3663-01 7 98547122 98547123 - G TRRAP Frame_Shift_Ins p.A1620Cfs*35 0.23 TCGA-AA-3663-01 7 99631505 99631505 A G ZKSCAN1 Silent p.K459K 0.10 TCGA-AA-3663-01 7 99697346 99697346 G T MCM7 Missense_Mutation p.L48M 0.46 tolerated(0.08) benign(0.031) TCGA-AA-3663-01 8 100454676 100454676 T G VPS13B Silent p.P1086P 0.05 TCGA-AA-3663-01 8 100789118 100789118 T C VPS13B Missense_Mutation p.C2480R 0.30 tolerated(0.07) benign(0.005) TCGA-AA-3663-01 8 101608970 101608970 A G SNX31 Missense_Mutation p.V292A 0.23 tolerated(0.56) benign(0.091) TCGA-AA-3663-01 8 101661534 101661534 G A SNX31 Missense_Mutation p.R37C 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 8 103266425 103266426 - G UBR5 3'UTR 0.28 TCGA-AA-3663-01 8 103354869 103354869 T A UBR5 Missense_Mutation p.E310D 0.18 tolerated(0.88) possibly_damaging(0.759) TCGA-AA-3663-01 8 103842132 103842132 T C AZIN1 Missense_Mutation p.M313V 0.16 tolerated(0.92) benign(0.001) TCGA-AA-3663-01 8 104413864 104413864 G A SLC25A32 Missense_Mutation p.A231V 0.05 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 8 10465038 10465038 C T RP1L1 Silent p.Q2190Q 0.30 TCGA-AA-3663-01 8 10470702 10470702 C T RP1L1 Silent p.P302P 0.06 TCGA-AA-3663-01 8 10480619 10480619 C T RP1L1 Silent p.T31T 0.27 TCGA-AA-3663-01 8 10756066 10756066 C T XKR6 Missense_Mutation p.R441Q 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-AA-3663-01 8 110502180 110502180 G A PKHD1L1 Splice_Site p.X3294_splice 0.23 TCGA-AA-3663-01 8 11174427 11174427 C T MTMR9 Intron 0.09 TCGA-AA-3663-01 8 114031307 114031307 G A CSMD3 Missense_Mutation p.A340V 0.07 tolerated(0.57) benign(0.12) TCGA-AA-3663-01 8 120233876 120233876 T C MAL2 Missense_Mutation p.L61P 0.06 tolerated(0.1) probably_damaging(0.991) TCGA-AA-3663-01 8 120862686 120862686 A C DSCC1 Missense_Mutation p.L141R 0.33 deleterious(0) benign(0.293) TCGA-AA-3663-01 8 12287918 12287918 C T FAM86B2 Missense_Mutation p.V95M 0.15 deleterious(0) benign(0.121) TCGA-AA-3663-01 8 123965800 123965800 A - ZHX2 Frame_Shift_Del p.T685Rfs*4 0.14 TCGA-AA-3663-01 8 123966174 123966174 A G ZHX2 Silent p.S808S 0.29 TCGA-AA-3663-01 8 125025708 125025708 T G FER1L6 Missense_Mutation p.I620S 0.10 tolerated(0.75) benign(0.027) TCGA-AA-3663-01 8 125499529 125499529 T C RNF139 Missense_Mutation p.C547R 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 8 125575101 125575101 G T MTSS1 Silent p.S319S 0.23 TCGA-AA-3663-01 8 135612914 135612914 A - ZFAT Intron 0.15 TCGA-AA-3663-01 8 139763747 139763748 - T COL22A1 Frame_Shift_Ins p.I680Nfs*21 0.19 TCGA-AA-3663-01 8 141310682 141310682 G A TRAPPC9 Missense_Mutation p.L650F 0.26 deleterious(0) benign(0.016) TCGA-AA-3663-01 8 142175326 142175326 G A DENND3 Silent p.R417R 0.19 TCGA-AA-3663-01 8 142195254 142195254 C T DENND3 Silent p.A907A 0.24 TCGA-AA-3663-01 8 143558835 143558835 C - BAI1 Frame_Shift_Del p.Q440Sfs*150 0.22 TCGA-AA-3663-01 8 144800410 144800410 G C MAPK15 Missense_Mutation p.S75T 0.07 deleterious(0) benign(0.057) TCGA-AA-3663-01 8 144992885 144992885 G A PLEC Nonsense_Mutation p.Q3839* 0.17 TCGA-AA-3663-01 8 145086754 145086754 T C SPATC1 Missense_Mutation p.L24P 0.07 deleterious(0) probably_damaging(0.992) TCGA-AA-3663-01 8 145542007 145542007 A G DGAT1 Missense_Mutation p.L198P 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 8 145739068 145739068 C T RECQL4 Missense_Mutation p.R696H 0.32 deleterious(0) possibly_damaging(0.814) TCGA-AA-3663-01 8 145741507 145741507 C A RECQL4 Missense_Mutation p.K332N 0.20 tolerated(0.11) benign(0.01) TCGA-AA-3663-01 8 17143926 17143926 C T VPS37A Missense_Mutation p.A395V 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-AA-3663-01 8 18662067 18662067 A - PSD3 Frame_Shift_Del p.F625Lfs*6 0.22 TCGA-AA-3663-01 8 1952171 1952171 A - KBTBD11 3'UTR 0.29 TCGA-AA-3663-01 8 2063769 2063769 T C MYOM2 Silent p.C1066C 0.24 TCGA-AA-3663-01 8 21562565 21562565 C T GFRA2 Missense_Mutation p.R326H 0.28 tolerated(0.11) benign(0.051) TCGA-AA-3663-01 8 21608391 21608391 C T GFRA2 Missense_Mutation p.C168Y 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 8 21964695 21964695 C A NUDT18 3'UTR 0.24 TCGA-AA-3663-01 8 21998169 21998169 T G REEP4 Missense_Mutation p.K25T 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 8 22064483 22064483 C T BMP1 Missense_Mutation p.R784W 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-3663-01 8 22102484 22102484 T - POLR3D 5'Flank 0.25 TCGA-AA-3663-01 8 22429302 22429302 C A SORBS3 Silent p.S605S 0.24 TCGA-AA-3663-01 8 22570886 22570886 G A PEBP4 Silent p.C227C 0.23 TCGA-AA-3663-01 8 22570890 22570890 G C PEBP4 Missense_Mutation p.A226G 0.34 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-AA-3663-01 8 22972251 22972251 C T TNFRSF10C Missense_Mutation p.P83L 0.22 tolerated(0.52) benign(0.097) TCGA-AA-3663-01 8 23190924 23190924 T C LOXL2 Missense_Mutation p.Y319C 0.29 tolerated(0.15) possibly_damaging(0.469) TCGA-AA-3663-01 8 23423719 23423719 C A SLC25A37 Silent p.P103P 0.28 TCGA-AA-3663-01 8 24350557 24350557 G T ADAM7 Missense_Mutation p.D553Y 0.47 deleterious(0) probably_damaging(0.981) TCGA-AA-3663-01 8 24813308 24813308 G A CTD-2168K21.2 5'Flank 0.07 TCGA-AA-3663-01 8 25744387 25744387 G T EBF2 Missense_Mutation p.P298H 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3663-01 8 26220346 26220346 T G PPP2R2A Missense_Mutation p.C272G 0.24 deleterious(0) probably_damaging(0.959) TCGA-AA-3663-01 8 26722254 26722254 G A ADRA1A Missense_Mutation p.T78M 0.29 deleterious(0.03) possibly_damaging(0.532) TCGA-AA-3663-01 8 27293827 27293827 T - PTK2B Frame_Shift_Del p.F436Lfs*19 0.22 TCGA-AA-3663-01 8 27308399 27308399 A G PTK2B Missense_Mutation p.E825G 0.27 deleterious(0) probably_damaging(0.986) TCGA-AA-3663-01 8 27364474 27364474 C T EPHX2 Missense_Mutation p.T208M 0.53 tolerated(0.19) benign(0.188) TCGA-AA-3663-01 8 27633929 27633930 - T ESCO2 Frame_Shift_Ins p.Y37Lfs*5 0.20 TCGA-AA-3663-01 8 27887827 27887827 C A NUGGC Nonsense_Mutation p.E673* 0.19 TCGA-AA-3663-01 8 28210808 28210809 - G ZNF395 Frame_Shift_Ins p.H234Pfs*19 0.21 TCGA-AA-3663-01 8 2836159 2836159 C T CSMD1 Nonsense_Mutation p.W2847* 0.32 TCGA-AA-3663-01 8 29203094 29203094 G A DUSP4 Intron 0.52 TCGA-AA-3663-01 8 29940416 29940416 C T TMEM66 Missense_Mutation p.G17D 0.23 tolerated(0.49) unknown(0) TCGA-AA-3663-01 8 3038637 3038637 T C CSMD1 Missense_Mutation p.Y1907C 0.07 probably_damaging(1) TCGA-AA-3663-01 8 3059171 3059171 C T CSMD1 Silent p.Q1687Q 0.25 TCGA-AA-3663-01 8 30889305 30889309 TCTTT - PURG Frame_Shift_Del p.K331Nfs*9 0.28 TCGA-AA-3663-01 8 30916702 30916702 C A WRN Missense_Mutation p.L44I 0.05 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 8 32505396 32505396 C A NRG1 Intron 0.34 TCGA-AA-3663-01 8 3263601 3263601 G A CSMD1 Silent p.C738C 0.25 TCGA-AA-3663-01 8 3265669 3265669 A G CSMD1 Missense_Mutation p.M608T 0.15 benign(0.431) TCGA-AA-3663-01 8 33347839 33347839 T C MAK16 Silent p.R143R 0.27 TCGA-AA-3663-01 8 33347857 33347857 G T MAK16 Missense_Mutation p.E149D 0.18 deleterious(0) probably_damaging(0.933) TCGA-AA-3663-01 8 35631844 35631844 G A UNC5D Missense_Mutation p.A836T 0.29 tolerated(0.66) benign(0.007) TCGA-AA-3663-01 8 37729024 37729024 G A RAB11FIP1 Missense_Mutation p.S1099F 0.20 deleterious(0) probably_damaging(0.948) TCGA-AA-3663-01 8 38262006 38262006 G A LETM2 Silent p.E353E 0.27 TCGA-AA-3663-01 8 40011809 40011809 A G C8orf4 3'UTR 0.27 TCGA-AA-3663-01 8 41467379 41467379 C T AGPAT6 Silent p.S147S 0.26 TCGA-AA-3663-01 8 42171929 42171929 A G IKBKB Missense_Mutation p.Y261C 0.19 tolerated(0.18) benign(0.002) TCGA-AA-3663-01 8 42693110 42693110 C A THAP1 Missense_Mutation p.A213S 0.08 deleterious_low_confidence(0) benign(0.163) TCGA-AA-3663-01 8 42938323 42938323 G A FNTA Missense_Mutation p.G282E 0.64 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 8 48715987 48715987 T - PRKDC Frame_Shift_Del p.T3267Pfs*7 0.34 TCGA-AA-3663-01 8 49831252 49831252 C G SNAI2 3'UTR 0.25 TCGA-AA-3663-01 8 53589073 53589073 T G RB1CC1 Missense_Mutation p.E143A 0.25 deleterious(0) probably_damaging(0.995) TCGA-AA-3663-01 8 54792097 54792097 C - RGS20 Frame_Shift_Del p.H151Ifs*3 0.25 TCGA-AA-3663-01 8 59060274 59060274 C T FAM110B 3'UTR 0.14 TCGA-AA-3663-01 8 59728127 59728127 T C TOX Missense_Mutation p.M388V 0.28 tolerated(0.24) benign(0.001) TCGA-AA-3663-01 8 62546272 62546273 - A ASPH Frame_Shift_Ins p.P302Sfs*14 0.28 TCGA-AA-3663-01 8 6360566 6360566 C T ANGPT2 3'UTR 0.11 TCGA-AA-3663-01 8 6377502 6377502 G T ANGPT2 Silent p.P271P 0.29 TCGA-AA-3663-01 8 67040565 67040565 A C TRIM55 Missense_Mutation p.R65S 0.16 tolerated(0.06) possibly_damaging(0.864) TCGA-AA-3663-01 8 67547126 67547126 G A VCPIP1 Silent p.D1093D 0.27 TCGA-AA-3663-01 8 67998331 67998331 C T CSPP1 Missense_Mutation p.R133C 0.63 deleterious(0) possibly_damaging(0.814) TCGA-AA-3663-01 8 68658284 68658284 C T CPA6 Silent p.P27P 0.15 TCGA-AA-3663-01 8 69351675 69351675 C T C8orf34 Intron 0.38 TCGA-AA-3663-01 8 69434162 69434162 T A C8orf34 Missense_Mutation p.N298K 0.30 tolerated(0.12) possibly_damaging(0.713) TCGA-AA-3663-01 8 70970987 70970987 A G PRDM14 Missense_Mutation p.V425A 0.28 deleterious(0.03) probably_damaging(0.978) TCGA-AA-3663-01 8 70971038 70971038 A G PRDM14 Missense_Mutation p.V408A 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3663-01 8 72181993 72181993 G A EYA1 Silent p.Y344Y 0.25 TCGA-AA-3663-01 8 73480429 73480429 C T KCNB2 Nonsense_Mutation p.R154* 0.28 TCGA-AA-3663-01 8 74203856 74203856 G A RPL7 Missense_Mutation p.R157C 0.22 tolerated(0.09) benign(0.03) TCGA-AA-3663-01 8 77775343 77775343 C T ZFHX4 Silent p.P3131P 0.24 TCGA-AA-3663-01 8 87656032 87656032 T C CNGB3 Silent p.S375S 0.26 TCGA-AA-3663-01 8 91657535 91657535 A G TMEM64 Missense_Mutation p.V200A 0.31 deleterious(0.04) possibly_damaging(0.551) TCGA-AA-3663-01 8 94747276 94747276 T C RBM12B Missense_Mutation p.M455V 0.26 tolerated(0.31) benign(0.001) TCGA-AA-3663-01 8 94748114 94748115 - A RBM12B Frame_Shift_Ins p.S176Lfs*15 0.22 TCGA-AA-3663-01 8 95653517 95653517 C - ESRP1 5'UTR 0.22 TCGA-AA-3663-01 8 95686611 95686612 AA - ESRP1 Frame_Shift_Del p.N512Hfs*7 0.38 TCGA-AA-3663-01 9 100618487 100618487 A T FOXE1 3'UTR 0.32 TCGA-AA-3663-01 9 100961794 100961794 G T TBC1D2 Silent p.R875R 0.25 TCGA-AA-3663-01 9 101547144 101547144 G A ANKS6 Nonsense_Mutation p.R293* 0.26 TCGA-AA-3663-01 9 101894835 101894835 A G TGFBR1 Missense_Mutation p.I130V 0.20 tolerated(0.26) benign(0.012) TCGA-AA-3663-01 9 103060217 103060217 G T INVS Splice_Site p.X1006_splice 0.07 TCGA-AA-3663-01 9 104133568 104133568 T - BAAT Frame_Shift_Del p.N40Tfs*21 0.20 TCGA-AA-3663-01 9 111945078 111945078 C A EPB41L4B Splice_Site p.X807_splice 0.31 TCGA-AA-3663-01 9 112199205 112199205 C T PTPN3 Silent p.A211A 0.52 TCGA-AA-3663-01 9 112899187 112899187 G T PALM2-AKAP2 Nonsense_Mutation p.E455* 0.37 TCGA-AA-3663-01 9 113703944 113703944 C T LPAR1 Missense_Mutation p.V184M 0.29 tolerated(0.99) benign(0.037) TCGA-AA-3663-01 9 116263830 116263830 G A RGS3 Intron 0.32 TCGA-AA-3663-01 9 117853325 117853325 C A TNC 5'UTR 0.23 TCGA-AA-3663-01 9 121929574 121929574 C T BRINP1 Missense_Mutation p.V692M 0.22 deleterious(0.01) benign(0.33) TCGA-AA-3663-01 9 123216151 123216151 C T CDK5RAP2 Silent p.R792R 0.27 TCGA-AA-3663-01 9 123686021 123686021 A G TRAF1 Missense_Mutation p.S64P 0.14 tolerated(0.25) benign(0.004) TCGA-AA-3663-01 9 123914741 123914741 T - CNTRL Intron 0.32 TCGA-AA-3663-01 9 125273870 125273870 G A OR1J2 Missense_Mutation p.V264I 0.22 deleterious_low_confidence(0.01) benign(0.039) TCGA-AA-3663-01 9 125562827 125562827 C T OR1K1 Silent p.C142C 0.31 TCGA-AA-3663-01 9 127652704 127652704 C A GOLGA1 Missense_Mutation p.E487D 0.55 deleterious(0.03) benign(0.077) TCGA-AA-3663-01 9 130294040 130294040 G T FAM129B Missense_Mutation p.L25M 0.23 tolerated(0.25) benign(0.28) TCGA-AA-3663-01 9 130438192 130438192 T C STXBP1 Missense_Mutation p.I407T 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3663-01 9 130472915 130472915 C T C9orf117 Nonsense_Mutation p.Q157* 0.28 TCGA-AA-3663-01 9 131371928 131371928 A G SPTAN1 Splice_Site p.X1587_splice 0.27 TCGA-AA-3663-01 9 131397431 131397431 C T WDR34 Silent p.Q307Q 0.54 TCGA-AA-3663-01 9 131476529 131476529 C T PKN3 Missense_Mutation p.R456C 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 9 131503842 131503842 C T ZER1 Missense_Mutation p.G570D 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 9 131669729 131669729 G T LRRC8A Missense_Mutation p.G96C 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3663-01 9 131670041 131670041 A G LRRC8A Missense_Mutation p.T200A 0.37 tolerated(0.72) benign(0.004) TCGA-AA-3663-01 9 131802943 131802943 G A FAM73B Missense_Mutation p.V24M 0.20 tolerated(0.06) benign(0.223) TCGA-AA-3663-01 9 132397719 132397719 T G NTMT1 Missense_Mutation p.H216Q 0.53 tolerated(0.41) benign(0.004) TCGA-AA-3663-01 9 132623282 132623282 G A USP20 Missense_Mutation p.E133K 0.21 tolerated(0.06) benign(0.012) TCGA-AA-3663-01 9 133364800 133364800 C T ASS1 Missense_Mutation p.R307C 0.34 tolerated(0.06) benign(0.06) TCGA-AA-3663-01 9 133470975 133470975 G T FUBP3 Missense_Mutation p.V64L 0.20 tolerated(0.52) benign(0.04) TCGA-AA-3663-01 9 135374911 135374911 A G C9orf171 Missense_Mutation p.S186G 0.16 tolerated(0.16) benign(0.009) TCGA-AA-3663-01 9 136635569 136635569 C T VAV2 Missense_Mutation p.D760N 0.53 deleterious(0) possibly_damaging(0.542) TCGA-AA-3663-01 9 136913306 136913306 C T BRD3 Missense_Mutation p.A329T 0.54 deleterious(0.01) probably_damaging(0.971) TCGA-AA-3663-01 9 137642463 137642463 G A COL5A1 Splice_Site p.X523_splice 0.32 TCGA-AA-3663-01 9 137676833 137676834 - G COL5A1 Splice_Site p.X830_splice 0.09 TCGA-AA-3663-01 9 137804916 137804916 G A FCN1 Silent p.D138D 0.21 TCGA-AA-3663-01 9 138378010 138378010 C T PPP1R26 Silent p.L552L 0.21 TCGA-AA-3663-01 9 138379339 138379339 G T PPP1R26 Nonsense_Mutation p.G995* 0.25 TCGA-AA-3663-01 9 138667155 138667155 G A KCNT1 Splice_Site p.X748_splice 0.21 TCGA-AA-3663-01 9 139118661 139118661 C T QSOX2 Missense_Mutation p.V130M 0.32 deleterious(0.03) possibly_damaging(0.658) TCGA-AA-3663-01 9 139232332 139232332 C T GPSM1 Silent p.D244D 0.38 TCGA-AA-3663-01 9 139258848 139258848 C T CARD9 Missense_Mutation p.R506H 0.22 deleterious(0) probably_damaging(0.971) TCGA-AA-3663-01 9 139265518 139265518 G A CARD9 Silent p.T134T 0.28 TCGA-AA-3663-01 9 139309079 139309079 T C PMPCA Missense_Mutation p.V171A 0.14 tolerated(0.11) benign(0.077) TCGA-AA-3663-01 9 139747935 139747935 C T MAMDC4 Intron 0.24 TCGA-AA-3663-01 9 139872093 139872093 G T PTGDS Missense_Mutation p.Q21H 0.31 tolerated(0.11) benign(0.03) TCGA-AA-3663-01 9 139926534 139926534 C A C9orf139 5'UTR 0.07 TCGA-AA-3663-01 9 140083566 140083568 AGG - SSNA1 In_Frame_Del p.E37del 0.44 TCGA-AA-3663-01 9 140147149 140147149 G A C9orf173 Silent p.R176R 0.22 TCGA-AA-3663-01 9 140510221 140510221 C A C9orf37 Missense_Mutation p.R144M 0.52 deleterious_low_confidence(0) benign(0.202) TCGA-AA-3663-01 9 16436099 16436099 C T BNC2 Missense_Mutation p.R698Q 0.28 tolerated(0.4) benign(0.07) TCGA-AA-3663-01 9 16436375 16436375 G - BNC2 Frame_Shift_Del p.P606Rfs*7 0.23 TCGA-AA-3663-01 9 18661983 18661983 G A ADAMTSL1 Missense_Mutation p.V333I 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-AA-3663-01 9 19058104 19058104 C T HAUS6 Silent p.L887L 0.24 TCGA-AA-3663-01 9 19786469 19786469 T C SLC24A2 Silent p.K132K 0.26 TCGA-AA-3663-01 9 21077394 21077394 A G IFNB1 Missense_Mutation p.Y159H 0.25 tolerated(0.11) possibly_damaging(0.689) TCGA-AA-3663-01 9 21410185 21410185 A G IFNA8 3'Flank 0.22 TCGA-AA-3663-01 9 2652886 2652886 T C VLDLR Silent p.T841T 0.25 TCGA-AA-3663-01 9 27558601 27558601 A G C9orf72 Missense_Mutation p.V248A 0.28 deleterious(0) probably_damaging(0.99) TCGA-AA-3663-01 9 3270471 3270471 G A RFX3 Silent p.C419C 0.15 TCGA-AA-3663-01 9 33056219 33056219 A G SMU1 Silent p.S338S 0.22 TCGA-AA-3663-01 9 3330276 3330276 G A RFX3 Missense_Mutation p.R153W 0.29 deleterious(0) probably_damaging(0.987) TCGA-AA-3663-01 9 33469244 33469244 G A NOL6 Missense_Mutation p.R275C 0.61 deleterious(0) probably_damaging(1) TCGA-AA-3663-01 9 33675326 33675326 T C PTENP1 RNA 0.09 TCGA-AA-3663-01 9 35711386 35711386 C A TLN1 Missense_Mutation p.Q1295H 0.12 deleterious(0.05) benign(0.273) TCGA-AA-3663-01 9 35737804 35737804 G A GBA2 Nonsense_Mutation p.Q816* 0.50 TCGA-AA-3663-01 9 35800708 35800708 T C NPR2 Silent p.P407P 0.33 TCGA-AA-3663-01 9 35801152 35801152 G A NPR2 Splice_Site p.X479_splice 0.25 TCGA-AA-3663-01 9 36236887 36236887 C T GNE Silent p.L268L 0.48 TCGA-AA-3663-01 9 37486113 37486113 T G POLR1E Silent p.A23A 0.28 TCGA-AA-3663-01 9 377029 377029 T C DOCK8 Missense_Mutation p.V753A 0.47 tolerated(0.56) benign(0.005) TCGA-AA-3663-01 9 37740871 37740871 C - FRMPD1 Frame_Shift_Del p.P784Rfs*45 0.22 TCGA-AA-3663-01 9 37746348 37746348 G - FRMPD1 Frame_Shift_Del p.V1442Lfs*35 0.22 TCGA-AA-3663-01 9 37746696 37746696 G A FRMPD1 Missense_Mutation p.R1556H 0.21 deleterious(0.03) benign(0.099) TCGA-AA-3663-01 9 4585387 4585387 G T SLC1A1 Missense_Mutation p.K468N 0.25 tolerated(0.18) benign(0.005) TCGA-AA-3663-01 9 5756352 5756352 T C KIAA1432 Silent p.S611S 0.22 TCGA-AA-3663-01 9 5988346 5988346 T - KIAA2026 Frame_Shift_Del p.R265Gfs*18 0.19 TCGA-AA-3663-01 9 7046905 7046905 C T KDM4C Missense_Mutation p.T768M 0.28 deleterious(0.03) possibly_damaging(0.672) TCGA-AA-3663-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.15 deleterious(0.01) possibly_damaging(0.573) TCGA-AA-3663-01 9 711528 711528 C T KANK1 Silent p.N254N 0.23 TCGA-AA-3663-01 9 71396409 71396409 A - FAM122A 3'UTR 0.26 TCGA-AA-3663-01 9 72833354 72833354 T - MAMDC2 Frame_Shift_Del p.F586Sfs*12 0.15 TCGA-AA-3663-01 9 73477944 73477944 G A TRPM3 Silent p.R114R 0.22 TCGA-AA-3663-01 9 74300077 74300077 T - TMEM2 3'UTR 0.37 TCGA-AA-3663-01 9 77377435 77377435 A G TRPM6 Silent p.L1384L 0.38 TCGA-AA-3663-01 9 77427255 77427255 C T TRPM6 Missense_Mutation p.R468H 0.13 tolerated(0.26) benign(0.052) TCGA-AA-3663-01 9 80854979 80854979 G A CEP78 Silent p.A98A 0.23 TCGA-AA-3663-01 9 86616029 86616029 T C RMI1 Missense_Mutation p.L43S 0.23 deleterious(0) possibly_damaging(0.782) TCGA-AA-3663-01 9 88694168 88694168 G A GOLM1 Missense_Mutation p.A23V 0.23 deleterious(0) possibly_damaging(0.866) TCGA-AA-3663-01 9 88960688 88960688 A G ZCCHC6 Missense_Mutation p.Y239H 0.22 tolerated(0.06) possibly_damaging(0.806) TCGA-AA-3663-01 9 90497876 90497876 C - SPATA31E1 Frame_Shift_Del p.P25Qfs*25 0.21 TCGA-AA-3663-01 9 92006182 92006182 G A SEMA4D Silent p.C257C 0.53 TCGA-AA-3663-01 9 94486492 94486492 A C ROR2 Missense_Mutation p.S762A 0.08 deleterious(0.02) possibly_damaging(0.798) TCGA-AA-3663-01 9 94841737 94841737 G C SPTLC1 Intron 0.29 TCGA-AA-3663-01 9 96002139 96002139 G A WNK2 Missense_Mutation p.A475T 0.30 unknown(0) TCGA-AA-3663-01 9 96233500 96233500 G A FAM120A Silent p.A184A 0.29 TCGA-AA-3663-01 9 97218551 97218551 C T HIATL1 Missense_Mutation p.A353V 0.24 deleterious(0) probably_damaging(0.954) TCGA-AA-3663-01 9 97887391 97887391 C A FANCC Missense_Mutation p.A325S 0.09 tolerated(0.09) possibly_damaging(0.872) TCGA-AA-3663-01 9 98775403 98775403 A G ERCC6L2 Missense_Mutation p.K496R 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-3663-01 X 100169621 100169621 G A XKRX Silent p.H352H 0.75 TCGA-AA-3663-01 X 100349695 100349695 G A TMEM35 Missense_Mutation p.R85H 0.20 tolerated(0.33) benign(0.019) TCGA-AA-3663-01 X 102004232 102004232 T C BHLHB9 Silent p.N103N 0.18 TCGA-AA-3663-01 X 102841668 102841668 A G TCEAL4 Missense_Mutation p.E22G 0.12 tolerated(0.38) benign(0.005) TCGA-AA-3663-01 X 102931887 102931887 T - MORF4L2 Frame_Shift_Del p.K23Nfs*12 0.39 TCGA-AA-3663-01 X 105876239 105876239 G A CXorf57 Missense_Mutation p.R389Q 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3663-01 X 106117178 106117178 T C TBC1D8B Missense_Mutation p.S1116P 0.64 tolerated(0.24) benign(0.025) TCGA-AA-3663-01 X 107807151 107807151 A T COL4A5 Missense_Mutation p.I91F 0.73 unknown(0) TCGA-AA-3663-01 X 108697080 108697080 C T GUCY2F Silent p.P347P 0.70 TCGA-AA-3663-01 X 110987993 110987993 A T ALG13 Silent p.P931P 0.39 TCGA-AA-3663-01 X 117960916 117960917 - AT ZCCHC12 3'UTR 0.69 TCGA-AA-3663-01 X 119388209 119388209 G A ZBTB33 Silent p.Q313Q 0.74 TCGA-AA-3663-01 X 120181738 120181738 T C GLUD2 Missense_Mutation p.F67S 0.07 tolerated(0.25) benign(0.039) TCGA-AA-3663-01 X 123657430 123657430 G A TENM1 Silent p.F939F 0.76 TCGA-AA-3663-01 X 12904439 12904439 C T TLR7 Missense_Mutation p.A271V 0.18 tolerated(0.22) benign(0) TCGA-AA-3663-01 X 129768970 129768971 - T ENOX2 Frame_Shift_Ins p.N498Kfs*3 0.12 TCGA-AA-3663-01 X 131762415 131762415 T C HS6ST2 Missense_Mutation p.N592D 0.79 deleterious_low_confidence(0) benign(0.312) TCGA-AA-3663-01 X 135761808 135761808 A C ARHGEF6 Silent p.S572S 0.20 TCGA-AA-3663-01 X 138667316 138667316 G T MCF2 Missense_Mutation p.S961Y 0.69 deleterious(0.04) benign(0.006) TCGA-AA-3663-01 X 144337550 144337550 C T SPANXN1 3'UTR 0.77 TCGA-AA-3663-01 X 152228103 152228103 T C PNMA3 3'UTR 0.76 TCGA-AA-3663-01 X 152243288 152243288 G - PNMA6C 3'UTR 0.57 TCGA-AA-3663-01 X 152721027 152721027 C T HAUS7 Silent p.T311T 0.18 TCGA-AA-3663-01 X 153136600 153136600 G T L1CAM Silent p.P145P 0.11 TCGA-AA-3663-01 X 153278124 153278124 C T IRAK1 Missense_Mutation p.A646T 0.55 tolerated(0.6) benign(0.028) TCGA-AA-3663-01 X 153581769 153581769 T A FLNA Missense_Mutation p.I1973F 0.78 deleterious(0.01) benign(0.031) TCGA-AA-3663-01 X 153592418 153592418 C T FLNA Missense_Mutation p.G751D 0.75 tolerated(0.09) possibly_damaging(0.613) TCGA-AA-3663-01 X 15365364 15365364 T - FIGF Frame_Shift_Del p.N287Tfs*81 0.46 TCGA-AA-3663-01 X 153693166 153693166 C - PLXNA3 Frame_Shift_Del p.H668Tfs*26 0.18 TCGA-AA-3663-01 X 153706667 153706667 C A LAGE3 Missense_Mutation p.R91M 0.80 tolerated(0.08) probably_damaging(0.935) TCGA-AA-3663-01 X 153741211 153741211 G A FAM3A Silent p.I21I 0.84 TCGA-AA-3663-01 X 154010069 154010069 G A MPP1 Missense_Mutation p.R319W 0.09 deleterious(0) probably_damaging(0.987) TCGA-AA-3663-01 X 155009412 155009412 A - SPRY3 3'UTR 0.11 TCGA-AA-3663-01 X 155239883 155239883 G T IL9R Nonsense_Mutation p.G459* 0.25 TCGA-AA-3663-01 X 1742145 1742145 G A ASMT Silent p.E61E 0.06 TCGA-AA-3663-01 X 18598042 18598042 A G CDKL5 Silent p.L119L 0.24 TCGA-AA-3663-01 X 230866 230866 G A GTPBP6 Silent p.D7D 0.40 TCGA-AA-3663-01 X 23412223 23412223 A G PTCHD1 Missense_Mutation p.E863G 0.51 tolerated(0.38) benign(0.001) TCGA-AA-3663-01 X 2406740 2406740 A G ZBED1 Missense_Mutation p.V674A 0.33 tolerated_low_confidence(0.6) benign(0.001) TCGA-AA-3663-01 X 24745993 24745993 G A POLA1 Silent p.P536P 0.83 TCGA-AA-3663-01 X 3028268 3028268 C T ARSF Silent p.A455A 0.84 TCGA-AA-3663-01 X 32466646 32466646 T - DMD Frame_Shift_Del p.K1238Rfs*6 0.42 TCGA-AA-3663-01 X 3248399 3248399 G A MXRA5 Silent p.L123L 0.82 TCGA-AA-3663-01 X 3248802 3248802 T C MXRA5 Missense_Mutation p.I67M 0.89 deleterious(0.03) probably_damaging(1) TCGA-AA-3663-01 X 37587398 37587398 A G XK Missense_Mutation p.T340A 0.84 tolerated(0.05) probably_damaging(0.93) TCGA-AA-3663-01 X 37965870 37965870 G A SYTL5 Missense_Mutation p.V416I 0.85 tolerated(0.53) benign(0.331) TCGA-AA-3663-01 X 38145722 38145722 C A RPGR Nonsense_Mutation p.E844* 0.61 TCGA-AA-3663-01 X 38176661 38176661 T - RPGR Frame_Shift_Del p.N176Mfs*2 0.42 TCGA-AA-3663-01 X 41010222 41010222 C A USP9X Missense_Mutation p.L559I 0.58 tolerated(0.08) benign(0.097) TCGA-AA-3663-01 X 41587149 41587149 A - GPR82 Frame_Shift_Del p.N292Tfs*21 0.44 TCGA-AA-3663-01 X 47272074 47272074 C T ZNF157 Missense_Mutation p.A201V 0.83 tolerated(0.25) possibly_damaging(0.867) TCGA-AA-3663-01 X 47426415 47426415 C - ARAF Frame_Shift_Del p.R255Gfs*37 0.75 TCGA-AA-3663-01 X 48386765 48386765 C T EBP Missense_Mutation p.L205F 0.74 tolerated(0.39) benign(0.02) TCGA-AA-3663-01 X 48547171 48547171 C - WAS Frame_Shift_Del p.P353Hfs*92 0.40 TCGA-AA-3663-01 X 48844217 48844217 G C GRIPAP1 Missense_Mutation p.S341R 0.62 benign(0.049) TCGA-AA-3663-01 X 48933619 48933620 - G WDR45 Intron 0.39 TCGA-AA-3663-01 X 49958634 49958634 T - AKAP4 Frame_Shift_Del p.S244Afs*38 0.41 TCGA-AA-3663-01 X 50053801 50053801 T C CCNB3 Missense_Mutation p.S878P 0.59 tolerated(0.07) benign(0.057) TCGA-AA-3663-01 X 53106078 53106078 G T GPR173 Missense_Mutation p.S92I 0.69 deleterious(0) possibly_damaging(0.61) TCGA-AA-3663-01 X 53620419 53620419 G T HUWE1 Missense_Mutation p.L1216I 0.54 possibly_damaging(0.845) TCGA-AA-3663-01 X 56310901 56310901 C T KLF8 Missense_Mutation p.H352Y 0.56 deleterious(0) unknown(0) TCGA-AA-3663-01 X 5810935 5810935 A G NLGN4X Silent p.L792L 0.82 TCGA-AA-3663-01 X 63412382 63412382 A G AMER1 Missense_Mutation p.M262T 0.31 tolerated(0.73) benign(0) TCGA-AA-3663-01 X 70468354 70468355 - C ZMYM3 Frame_Shift_Ins p.I587Hfs*17 0.12 TCGA-AA-3663-01 X 79699823 79699823 A G FAM46D 3'UTR 0.22 TCGA-AA-3663-01 X 84342825 84342825 C T APOOL 3'UTR 0.74 TCGA-AA-3663-01 X 86924418 86924418 C T KLHL4 3'UTR 0.64 TCGA-AA-3663-01 X 8763195 8763195 C T FAM9A Missense_Mutation p.G252E 0.12 tolerated_low_confidence(1) unknown(0) TCGA-AA-3663-01 X 9859071 9859071 C T SHROOM2 Silent p.D124D 0.17 TCGA-AA-3663-01 Y 16734354 16734354 T G NLGN4Y Missense_Mutation p.L119V 0.12 tolerated(0.59) probably_damaging(0.971) TCGA-AA-3663-01 Y 16952604 16952604 G A NLGN4Y Missense_Mutation p.R638H 0.72 tolerated(0.15) probably_damaging(0.984) TCGA-AA-3663-01 Y 2655516 2655516 C G SRY Missense_Mutation p.K43N 0.19 tolerated(1) benign(0.011) TCGA-AA-3697-01 10 103769156 103769156 C A C10orf76 Missense_Mutation p.R310L 0.20 deleterious(0) probably_damaging(0.995) TCGA-AA-3697-01 10 22680767 22680767 G T SPAG6 Missense_Mutation p.R372L 0.21 tolerated(0.2) benign(0.166) TCGA-AA-3697-01 10 43617458 43617458 G C RET Missense_Mutation p.S932T 0.16 deleterious(0) probably_damaging(1) TCGA-AA-3697-01 10 50669513 50669513 C A ERCC6 Missense_Mutation p.A1290S 0.27 deleterious(0.03) possibly_damaging(0.893) TCGA-AA-3697-01 10 95720511 95720511 G A PIPSL RNA 0.24 TCGA-AA-3697-01 10 99517031 99517031 C T ZFYVE27 Missense_Mutation p.T356M 0.48 tolerated(0.07) probably_damaging(0.978) TCGA-AA-3697-01 11 100170065 100170065 G A CNTN5 Missense_Mutation p.V853I 0.39 deleterious(0.02) probably_damaging(0.956) TCGA-AA-3697-01 11 108811201 108811201 G T DDX10 3'UTR 0.17 TCGA-AA-3697-01 11 112020875 112020875 C G IL18 Missense_Mutation p.R49T 0.15 deleterious(0) probably_damaging(0.996) TCGA-AA-3697-01 11 119001637 119001637 C A HINFP Missense_Mutation p.H128Q 0.15 tolerated(0.43) benign(0.011) TCGA-AA-3697-01 11 124793313 124793313 G A HEPACAM Silent p.Y242Y 0.18 TCGA-AA-3697-01 11 1585169 1585169 C G DUSP8 Silent p.R94R 0.19 TCGA-AA-3697-01 11 26692717 26692717 G A SLC5A12 Missense_Mutation p.H597Y 0.15 tolerated_low_confidence(0.35) benign(0.069) TCGA-AA-3697-01 11 3660999 3660999 G A ART5 Silent p.R220R 0.14 TCGA-AA-3697-01 11 43351544 43351544 T C API5 Missense_Mutation p.V386A 0.22 tolerated(0.54) benign(0.101) TCGA-AA-3697-01 11 49831886 49831886 G T RP11-707M1.1 RNA 0.19 TCGA-AA-3697-01 11 49831887 49831887 G T RP11-707M1.1 RNA 0.20 TCGA-AA-3697-01 11 58034983 58034983 G A OR10W1 Silent p.A116A 0.36 TCGA-AA-3697-01 11 6291936 6291936 C A CCKBR Nonsense_Mutation p.Y238* 0.14 TCGA-AA-3697-01 11 66082790 66082790 G T CD248 Missense_Mutation p.P570Q 0.20 deleterious(0.04) benign(0.232) TCGA-AA-3697-01 11 6637259 6637259 G A TPP1 Silent p.F374F 0.16 TCGA-AA-3697-01 11 67353915 67353915 C A GSTP1 Missense_Mutation p.A167D 0.18 tolerated(0.07) benign(0.207) TCGA-AA-3697-01 11 71710927 71710927 A G IL18BP 5'UTR 0.24 TCGA-AA-3697-01 11 73429661 73429661 T C RAB6A Intron 0.17 TCGA-AA-3697-01 11 82909681 82909681 G T ANKRD42 Intron 0.22 TCGA-AA-3697-01 11 83809965 83809965 C G DLG2 Splice_Site p.X250_splice 0.19 TCGA-AA-3697-01 11 96116609 96116609 C T CCDC82 Missense_Mutation p.S272N 0.24 tolerated(0.25) benign(0.003) TCGA-AA-3697-01 11 9771577 9771577 C T SWAP70 3'UTR 0.20 TCGA-AA-3697-01 12 10573092 10573092 G A KLRC3 Nonsense_Mutation p.Q20* 0.10 TCGA-AA-3697-01 12 10588528 10588528 G A KLRC2 Nonsense_Mutation p.Q20* 0.12 TCGA-AA-3697-01 12 106460838 106460838 G T NUAK1 Missense_Mutation p.S576R 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-3697-01 12 121877797 121877797 C T KDM2B Missense_Mutation p.R1231Q 0.14 deleterious(0.05) possibly_damaging(0.836) TCGA-AA-3697-01 12 130184464 130184464 C A TMEM132D Missense_Mutation p.D287Y 0.18 deleterious(0) probably_damaging(0.972) TCGA-AA-3697-01 12 130184465 130184465 C A TMEM132D Silent p.L286L 0.18 TCGA-AA-3697-01 12 1599426 1599426 C T ERC1 3'UTR 0.20 TCGA-AA-3697-01 12 21370218 21370218 C T SLCO1B1 Missense_Mutation p.H555Y 0.38 tolerated(1) benign(0) TCGA-AA-3697-01 12 22086803 22086803 A G ABCC9 Missense_Mutation p.F66S 0.19 deleterious(0) possibly_damaging(0.9) TCGA-AA-3697-01 12 26277070 26277074 TTCTT - BHLHE41 Frame_Shift_Del p.R57Pfs*3 0.35 TCGA-AA-3697-01 12 29494008 29494008 G T ERGIC2 3'UTR 0.05 TCGA-AA-3697-01 12 30877380 30877380 A G CAPRIN2 Silent p.S637S 0.19 TCGA-AA-3697-01 12 56077753 56077753 G A METTL7B Missense_Mutation p.E219K 0.17 tolerated(0.37) benign(0.005) TCGA-AA-3697-01 12 62696589 62696589 T G USP15 Missense_Mutation p.L79R 0.19 deleterious(0) possibly_damaging(0.901) TCGA-AA-3697-01 12 77444424 77444424 C T E2F7 Missense_Mutation p.R157H 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3697-01 12 79689918 79689918 G A SYT1 Missense_Mutation p.V182M 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-3697-01 12 79693302 79693302 C T SYT1 Missense_Mutation p.R261C 0.40 deleterious(0) probably_damaging(0.957) TCGA-AA-3697-01 12 80735728 80735728 G A OTOGL Missense_Mutation p.G1675E 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3697-01 12 93895084 93895084 T A MRPL42 3'UTR 0.08 TCGA-AA-3697-01 13 113208414 113208414 G A TUBGCP3 Missense_Mutation p.T308M 0.16 tolerated(0.08) benign(0.067) TCGA-AA-3697-01 13 113478676 113478676 G A ATP11A Missense_Mutation p.G270E 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3697-01 13 25044082 25044082 C A PARP4 Missense_Mutation p.A666S 0.11 deleterious(0) probably_damaging(0.998) TCGA-AA-3697-01 13 32366828 32366828 G C RXFP2 Silent p.L463L 0.07 TCGA-AA-3697-01 13 36424792 36424792 T C DCLK1 Intron 0.07 TCGA-AA-3697-01 13 37678314 37678314 T C CSNK1A1L 3'UTR 0.09 TCGA-AA-3697-01 13 78318512 78318512 A T SLAIN1 Silent p.G123G 0.06 TCGA-AA-3697-01 14 21868668 21868668 G A CHD8 Silent p.L1492L 0.24 TCGA-AA-3697-01 14 50877222 50877222 G A CDKL1 RNA 0.24 TCGA-AA-3697-01 14 52781897 52781897 G A PTGER2 Missense_Mutation p.V211M 0.22 deleterious(0) probably_damaging(0.973) TCGA-AA-3697-01 14 57272161 57272161 A T OTX2 Missense_Mutation p.L5H 0.21 tolerated(0.06) probably_damaging(0.927) TCGA-AA-3697-01 14 62567301 62567301 A G SYT16 Missense_Mutation p.E605G 0.21 deleterious(0) probably_damaging(0.996) TCGA-AA-3697-01 14 63453879 63453879 G A KCNH5 Missense_Mutation p.R154W 0.25 deleterious(0) probably_damaging(0.936) TCGA-AA-3697-01 14 89192963 89192963 C T EML5 Missense_Mutation p.R370H 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3697-01 15 101110055 101110056 - A LINS Frame_Shift_Ins p.S555Kfs*28 0.18 TCGA-AA-3697-01 15 101821972 101821972 C A SNRPA1 Missense_Mutation p.G242V 0.24 tolerated(0.21) benign(0.001) TCGA-AA-3697-01 15 101821973 101821973 C A SNRPA1 Missense_Mutation p.G242C 0.24 deleterious(0.02) benign(0.378) TCGA-AA-3697-01 15 34395145 34395145 C T PGBD4 Missense_Mutation p.P138L 0.23 tolerated(1) benign(0) TCGA-AA-3697-01 15 42729493 42729493 C T ZNF106 Silent p.Q1538Q 0.62 TCGA-AA-3697-01 15 45426460 45426460 C T DUOX1 Missense_Mutation p.A87V 0.14 deleterious(0.01) benign(0.102) TCGA-AA-3697-01 15 54307177 54307177 A G UNC13C Missense_Mutation p.K693E 0.13 tolerated_low_confidence(0.3) benign(0.024) TCGA-AA-3697-01 15 74610907 74610907 G T CCDC33 Intron 0.19 TCGA-AA-3697-01 15 74610908 74610908 G T CCDC33 Intron 0.20 TCGA-AA-3697-01 15 75702524 75702524 T A SIN3A Missense_Mutation p.D371V 0.47 deleterious(0) probably_damaging(1) TCGA-AA-3697-01 15 76075173 76075173 C T RN7SL319P 5'Flank 0.65 TCGA-AA-3697-01 15 78585066 78585066 C A WDR61 Missense_Mutation p.D71Y 0.22 deleterious(0.03) probably_damaging(0.993) TCGA-AA-3697-01 15 78585067 78585067 C A WDR61 Silent p.V70V 0.21 TCGA-AA-3697-01 15 83346545 83346545 C T AP3B2 Missense_Mutation p.R419H 0.75 tolerated(0.06) benign(0.069) TCGA-AA-3697-01 16 20084857 20084857 C T GPR139 Missense_Mutation p.V28M 0.14 deleterious(0.01) benign(0.036) TCGA-AA-3697-01 16 21666715 21666715 G A METTL9 Missense_Mutation p.V307I 0.31 tolerated(0.15) possibly_damaging(0.468) TCGA-AA-3697-01 16 28181199 28181199 C A XPO6 Missense_Mutation p.G146V 0.11 deleterious(0) probably_damaging(0.997) TCGA-AA-3697-01 16 31088450 31088450 G A ZNF646 Missense_Mutation p.A269T 0.24 tolerated(0.13) benign(0.046) TCGA-AA-3697-01 16 3283780 3283780 G A ZNF200 5'UTR 0.33 TCGA-AA-3697-01 16 5145509 5145509 C G FAM86A Missense_Mutation p.E35Q 0.14 tolerated(0.08) possibly_damaging(0.634) TCGA-AA-3697-01 16 53528092 53528092 C T AKTIP Missense_Mutation p.R223H 0.12 tolerated(1) benign(0) TCGA-AA-3697-01 16 54966440 54966440 G T IRX5 Missense_Mutation p.A94S 0.16 tolerated(0.31) benign(0.097) TCGA-AA-3697-01 16 58073982 58073982 C A MMP15 Missense_Mutation p.T215N 0.19 deleterious(0.03) benign(0.233) TCGA-AA-3697-01 16 58324918 58324918 C A PRSS54 Missense_Mutation p.G70C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3697-01 16 66919866 66919866 T G PDP2 3'UTR 0.67 TCGA-AA-3697-01 16 67978979 67978979 C A SLC12A4 Intron 0.21 TCGA-AA-3697-01 17 10303799 10303799 G A MYH8 Missense_Mutation p.R1215W 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3697-01 17 20805549 20805549 T A RP11-344E13.3 RNA 0.22 TCGA-AA-3697-01 17 27030607 27030607 G A PROCA1 Missense_Mutation p.S327F 0.37 deleterious(0) probably_damaging(0.929) TCGA-AA-3697-01 17 35343936 35343936 T C AATF Silent p.L285L 0.18 TCGA-AA-3697-01 17 37074956 37074956 C T LASP1 Silent p.D237D 0.24 TCGA-AA-3697-01 17 39521771 39521771 C T KRT33B Missense_Mutation p.R208H 0.17 deleterious(0.03) benign(0.262) TCGA-AA-3697-01 17 40321504 40321504 G A KCNH4 Silent p.D527D 0.30 TCGA-AA-3697-01 17 40854508 40854508 A - EZH1 3'UTR 0.18 TCGA-AA-3697-01 17 43111675 43111675 G A DCAKD Missense_Mutation p.R66C 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3697-01 17 45487056 45487056 C A EFCAB13 Missense_Mutation p.N759K 0.17 tolerated(0.14) benign(0.388) TCGA-AA-3697-01 17 52993153 52993153 G C TOM1L1 Missense_Mutation p.R217P 0.16 deleterious(0) possibly_damaging(0.889) TCGA-AA-3697-01 17 52993177 52993177 A G TOM1L1 Missense_Mutation p.E225G 0.14 deleterious(0) probably_damaging(0.997) TCGA-AA-3697-01 17 59533844 59533844 C T TBX4 5'UTR 0.14 TCGA-AA-3697-01 17 61457155 61457155 G T TANC2 Nonsense_Mutation p.G813* 0.12 TCGA-AA-3697-01 17 61457156 61457156 G T TANC2 Missense_Mutation p.G813V 0.11 deleterious(0) probably_damaging(0.994) TCGA-AA-3697-01 17 7366281 7366281 G A ZBTB4 Missense_Mutation p.R674C 0.81 probably_damaging(0.994) TCGA-AA-3697-01 17 74540043 74540043 C T PRCD 3'Flank 0.40 TCGA-AA-3697-01 17 8926055 8926064 CCGAGAACTA - NTN1 Frame_Shift_Del p.E123Cfs*19 0.22 TCGA-AA-3697-01 18 19144238 19144238 G A ESCO1 Missense_Mutation p.H583Y 0.20 tolerated(0.42) benign(0.141) TCGA-AA-3697-01 18 47778084 47778084 C G CCDC11 Missense_Mutation p.A182P 0.26 deleterious(0) probably_damaging(0.966) TCGA-AA-3697-01 18 72998177 72998177 G T TSHZ1 Missense_Mutation p.R227L 0.39 deleterious(0) probably_damaging(0.988) TCGA-AA-3697-01 19 11832452 11832452 C A ZNF823 3'UTR 0.35 TCGA-AA-3697-01 19 16045213 16045213 C T CYP4F11 Silent p.P2P 0.19 TCGA-AA-3697-01 19 33078301 33078301 T A PDCD5 3'UTR 0.08 TCGA-AA-3697-01 19 33872997 33872997 C A CEBPG 3'UTR 0.22 TCGA-AA-3697-01 19 33872998 33872998 C A CEBPG 3'UTR 0.23 TCGA-AA-3697-01 19 3612050 3612050 G A CACTIN Silent p.Y716Y 0.39 TCGA-AA-3697-01 19 3653565 3653565 G A PIP5K1C Missense_Mutation p.T215M 0.40 deleterious(0) probably_damaging(0.977) TCGA-AA-3697-01 19 41454994 41454994 C A AC092071.1 3'Flank 0.13 TCGA-AA-3697-01 19 52002861 52002861 C T SIGLEC12 Silent p.T306T 0.21 TCGA-AA-3697-01 19 57175506 57175506 C T ZNF835 Missense_Mutation p.R354H 0.43 deleterious(0) probably_damaging(0.996) TCGA-AA-3697-01 19 57327324 57327339 TCCCTTCCTTCAGAGG - PEG3 Frame_Shift_Del p.T824Nfs*10 0.16 TCGA-AA-3697-01 19 58291124 58291124 G A ZNF586 Missense_Mutation p.R390H 0.35 tolerated(0.08) benign(0.017) TCGA-AA-3697-01 19 9768779 9768779 C G ZNF562 Missense_Mutation p.E49D 0.15 tolerated(1) benign(0.004) TCGA-AA-3697-01 1 109242474 109242474 T C PRPF38B Silent p.S491S 0.39 TCGA-AA-3697-01 1 111969712 111969712 C A OVGP1 Silent p.G9G 0.12 TCGA-AA-3697-01 1 111969713 111969713 C A OVGP1 Missense_Mutation p.G9V 0.12 deleterious(0.01) probably_damaging(0.953) TCGA-AA-3697-01 1 12359377 12359377 A T VPS13D Missense_Mutation p.K2051M 0.17 probably_damaging(0.965) TCGA-AA-3697-01 1 145560077 145560077 C T ANKRD35 Missense_Mutation p.S188L 0.19 deleterious(0) possibly_damaging(0.857) TCGA-AA-3697-01 1 152191690 152191690 G T HRNR Silent p.G805G 0.41 TCGA-AA-3697-01 1 179292580 179292580 G T SOAT1 Missense_Mutation p.D43Y 0.21 deleterious(0) possibly_damaging(0.728) TCGA-AA-3697-01 1 182908369 182908370 - T SHCBP1L Frame_Shift_Ins p.Y340Ifs*3 0.23 TCGA-AA-3697-01 1 204948498 204948498 G A NFASC Missense_Mutation p.V663I 0.39 tolerated(0.77) benign(0.42) TCGA-AA-3697-01 1 212119975 212119975 G T INTS7 Missense_Mutation p.Q797K 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-3697-01 1 216680288 216680288 T G ESRRG Missense_Mutation p.K469T 0.34 deleterious(0) probably_damaging(0.994) TCGA-AA-3697-01 1 21952806 21952806 G C RAP1GAP Silent p.L55L 0.16 TCGA-AA-3697-01 1 235324587 235324587 C A RBM34 5'UTR 0.26 TCGA-AA-3697-01 1 2938642 2938642 T G ACTRT2 Missense_Mutation p.F131C 0.16 deleterious(0) probably_damaging(0.995) TCGA-AA-3697-01 1 41514432 41514432 G A SCMH1 Silent p.I402I 0.21 TCGA-AA-3697-01 1 47737811 47737811 C A STIL Missense_Mutation p.V774L 0.22 tolerated(0.06) benign(0.001) TCGA-AA-3697-01 1 64644390 64644390 C T ROR1 Missense_Mutation p.S889L 0.24 tolerated_low_confidence(0.29) benign(0.004) TCGA-AA-3697-01 1 85624329 85624329 G C SYDE2 3'UTR 0.19 TCGA-AA-3697-01 1 908276 908276 C T PLEKHN1 Silent p.G346G 0.35 TCGA-AA-3697-01 20 29960711 29960712 AA - DEFB118 Frame_Shift_Del p.Q37Lfs*23 0.11 TCGA-AA-3697-01 20 32868827 32868827 G A AHCY 3'UTR 0.09 TCGA-AA-3697-01 20 34542314 34542314 C T SCAND1 5'UTR 0.17 TCGA-AA-3697-01 20 43564092 43564092 C T PABPC1L Missense_Mutation p.P502L 0.06 tolerated(0.06) benign(0.001) TCGA-AA-3697-01 20 43580602 43580602 C A TOMM34 Missense_Mutation p.R141L 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3697-01 20 45848976 45848976 C G ZMYND8 Splice_Site p.X1094_splice 0.22 TCGA-AA-3697-01 20 46307467 46307467 G A SULF2 Silent p.D382D 0.05 TCGA-AA-3697-01 20 4708640 4708640 G C PRND 3'UTR 0.18 TCGA-AA-3697-01 20 57767560 57767560 G A ZNF831 Missense_Mutation p.V496M 0.15 tolerated(0.07) probably_damaging(0.926) TCGA-AA-3697-01 21 32638631 32638631 G T TIAM1 Missense_Mutation p.P220T 0.23 deleterious_low_confidence(0.02) benign(0.016) TCGA-AA-3697-01 21 41033652 41033652 G A B3GALT5 3'UTR 0.15 TCGA-AA-3697-01 22 18358279 18358279 C A MICAL3 Intron 0.31 TCGA-AA-3697-01 22 26168328 26168328 G T MYO18B Nonsense_Mutation p.E574* 0.21 TCGA-AA-3697-01 22 31006915 31006915 G T TCN2 Missense_Mutation p.W41L 0.21 tolerated(0.34) benign(0.444) TCGA-AA-3697-01 22 31006916 31006916 G A TCN2 Nonsense_Mutation p.W41* 0.21 TCGA-AA-3697-01 22 36655823 36655823 C T APOL1 Intron 0.42 TCGA-AA-3697-01 22 37319384 37319384 G A CSF2RB Missense_Mutation p.V59M 0.16 tolerated(0.22) benign(0.044) TCGA-AA-3697-01 22 39475016 39475016 G A APOBEC3G Missense_Mutation p.V33I 0.33 tolerated(0.14) benign(0.106) TCGA-AA-3697-01 22 40642084 40642084 A G TNRC6B Missense_Mutation p.K24R 0.23 deleterious(0.01) unknown(0) TCGA-AA-3697-01 22 45728403 45728403 C G FAM118A Missense_Mutation p.S250C 0.18 deleterious(0.02) probably_damaging(0.918) TCGA-AA-3697-01 22 51010461 51010461 G A CPT1B Missense_Mutation p.R517W 0.36 deleterious(0) probably_damaging(0.987) TCGA-AA-3697-01 22 51133222 51133222 C A SHANK3 Silent p.P350P 0.21 TCGA-AA-3697-01 2 110922733 110922733 C T NPHP1 Splice_Site p.X209_splice 0.15 TCGA-AA-3697-01 2 111398781 111398782 - C BUB1 Frame_Shift_Ins p.F929Vfs*6 0.16 TCGA-AA-3697-01 2 120834604 120834604 G C EPB41L5 Missense_Mutation p.R188T 0.21 deleterious(0) probably_damaging(0.992) TCGA-AA-3697-01 2 131799430 131799430 C T ARHGEF4 Silent p.N460N 0.16 TCGA-AA-3697-01 2 143790841 143790842 TT - KYNU Frame_Shift_Del p.S332Kfs*13 0.14 TCGA-AA-3697-01 2 145146591 145146591 T A ZEB2 3'UTR 0.22 TCGA-AA-3697-01 2 1670092 1670092 G A PXDN Silent p.G395G 0.28 TCGA-AA-3697-01 2 168100712 168100712 T G XIRP2 Missense_Mutation p.L937R 0.17 probably_damaging(1) TCGA-AA-3697-01 2 171649424 171649424 C G ERICH2 Missense_Mutation p.Q90E 0.17 tolerated(0.09) benign(0.166) TCGA-AA-3697-01 2 207619970 207619970 G A MDH1B Silent p.L225L 0.16 TCGA-AA-3697-01 2 209035745 209035745 C T C2orf80 Missense_Mutation p.S166N 0.17 tolerated(0.15) benign(0.014) TCGA-AA-3697-01 2 223499164 223499164 C A FARSB Missense_Mutation p.K184N 0.21 deleterious(0.02) possibly_damaging(0.466) TCGA-AA-3697-01 2 225740848 225740848 C T DOCK10 Missense_Mutation p.E280K 0.21 deleterious(0) possibly_damaging(0.447) TCGA-AA-3697-01 2 241570316 241570316 G A GPR35 3'UTR 0.54 TCGA-AA-3697-01 2 249832 249832 G A SH3YL1 Missense_Mutation p.A42V 0.16 deleterious(0.04) benign(0.15) TCGA-AA-3697-01 2 32530598 32530598 T C YIPF4 Missense_Mutation p.L213S 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-3697-01 2 39164528 39164528 G A ARHGEF33 Silent p.S206S 0.60 TCGA-AA-3697-01 2 42990501 42990501 C G OXER1 Silent p.V273V 0.62 TCGA-AA-3697-01 2 44073341 44073341 C G ABCG8 Missense_Mutation p.F71L 0.23 tolerated(0.43) benign(0.016) TCGA-AA-3697-01 2 54482716 54482716 G A TSPYL6 Silent p.P191P 0.20 TCGA-AA-3697-01 2 73676904 73676904 G A ALMS1 Missense_Mutation p.D1083N 0.16 benign(0.17) TCGA-AA-3697-01 2 80646667 80646668 GA T CTNNA2 Frame_Shift_Del p.E411* 0.17 TCGA-AA-3697-01 2 98275931 98275931 C A ACTR1B Missense_Mutation p.G67W 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3697-01 3 110837500 110837500 C A PVRL3 Intron 0.61 TCGA-AA-3697-01 3 111603071 111603071 T G PHLDB2 Missense_Mutation p.F49L 0.28 tolerated_low_confidence(0.55) benign(0.007) TCGA-AA-3697-01 3 113723483 113723483 C G KIAA1407 Splice_Site p.X660_splice 0.21 TCGA-AA-3697-01 3 119445057 119445057 T C MAATS1 Missense_Mutation p.I241T 0.25 deleterious(0) probably_damaging(0.998) TCGA-AA-3697-01 3 121132024 121132024 A C STXBP5L Missense_Mutation p.M1014L 0.20 tolerated(1) benign(0.001) TCGA-AA-3697-01 3 128060108 128060108 C T EEFSEC Silent p.F273F 0.26 TCGA-AA-3697-01 3 129238471 129238471 C T IFT122 Missense_Mutation p.R1229C 0.55 deleterious(0.02) probably_damaging(0.975) TCGA-AA-3697-01 3 135721379 135721379 C T PPP2R3A Nonsense_Mutation p.R347* 0.43 TCGA-AA-3697-01 3 183017801 183017801 G T MCF2L2 Missense_Mutation p.L433M 0.04 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3697-01 3 186303314 186303314 T A DNAJB11 3'UTR 0.24 TCGA-AA-3697-01 3 188956629 188956629 G A TPRG1 Missense_Mutation p.R137Q 0.26 tolerated(0.1) benign(0.017) TCGA-AA-3697-01 3 46721932 46721932 C T ALS2CL Silent p.A512A 0.28 TCGA-AA-3697-01 3 54661896 54661896 T G CACNA2D3 Missense_Mutation p.L349R 0.18 deleterious(0) probably_damaging(0.961) TCGA-AA-3697-01 4 100235023 100235023 T G ADH1B Silent p.G261G 0.13 TCGA-AA-3697-01 4 123265619 123265632 GTCACGGATCAGGC - KIAA1109 Frame_Shift_Del p.S4213Ffs*8 0.13 TCGA-AA-3697-01 4 126241456 126241456 C T FAT4 Missense_Mutation p.S1297L 0.23 possibly_damaging(0.752) TCGA-AA-3697-01 4 134072450 134072450 C T PCDH10 Silent p.R385R 0.53 TCGA-AA-3697-01 4 144796551 144796551 T G GYPE Intron 0.24 TCGA-AA-3697-01 4 159772560 159772560 G A FNIP2 Missense_Mutation p.R272Q 0.51 deleterious(0) probably_damaging(0.918) TCGA-AA-3697-01 4 183959896 183959896 G A FAM92A1P2 RNA 0.33 TCGA-AA-3697-01 4 2948209 2948209 C T NOP14 Missense_Mutation p.R522Q 0.05 tolerated(0.14) benign(0.234) TCGA-AA-3697-01 4 47462240 47462240 G A COMMD8 Missense_Mutation p.S48L 0.29 tolerated(1) benign(0.007) TCGA-AA-3697-01 4 52894923 52894923 C A SGCB Missense_Mutation p.L198F 0.39 tolerated(0.08) possibly_damaging(0.859) TCGA-AA-3697-01 4 88379249 88379249 C T NUDT9 3'UTR 0.25 TCGA-AA-3697-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.49 TCGA-AA-3697-01 5 112174639 112174639 T C APC Silent p.G1116G 0.47 TCGA-AA-3697-01 5 112175216 112175216 G T APC Nonsense_Mutation p.E1309* 0.25 TCGA-AA-3697-01 5 133292471 133292471 C A C5orf15 3'UTR 0.50 TCGA-AA-3697-01 5 140166589 140166589 C T PCDHA1 Silent p.N238N 0.22 TCGA-AA-3697-01 5 140166735 140166735 G T PCDHA1 Missense_Mutation p.R287L 0.18 tolerated_low_confidence(0.22) benign(0) TCGA-AA-3697-01 5 140215246 140215246 C T PCDHA7 Silent p.T426T 0.29 TCGA-AA-3697-01 5 140242937 140242937 G C AC005609.1 Missense_Mutation p.S13R 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.654) TCGA-AA-3697-01 5 140731009 140731009 G A PCDHGB1 Silent p.S394S 0.47 TCGA-AA-3697-01 5 140744290 140744290 G A PCDHGA5 Silent p.P131P 0.32 TCGA-AA-3697-01 5 141020083 141020083 C T FCHSD1 3'UTR 0.23 TCGA-AA-3697-01 5 141027623 141027623 G A FCHSD1 Missense_Mutation p.A206V 0.21 tolerated(0.31) benign(0.002) TCGA-AA-3697-01 5 146728376 146728376 C T STK32A Intron 0.54 TCGA-AA-3697-01 5 15500812 15500812 C T FBXL7 Silent p.Y9Y 0.10 TCGA-AA-3697-01 5 17275941 17275941 G T BASP1 Missense_Mutation p.A206S 0.39 tolerated(0.06) probably_damaging(0.989) TCGA-AA-3697-01 5 176084863 176084863 G T TSPAN17 3'UTR 0.33 TCGA-AA-3697-01 5 178140615 178140615 C G ZNF354A Missense_Mutation p.K88N 0.15 tolerated(0.11) benign(0.003) TCGA-AA-3697-01 5 35904679 35904679 T A CAPSL Missense_Mutation p.I199F 0.45 tolerated(0.29) benign(0.396) TCGA-AA-3697-01 5 3599422 3599422 C T IRX1 Silent p.Y120Y 0.37 TCGA-AA-3697-01 5 45262515 45262515 C A HCN1 Silent p.L727L 0.43 TCGA-AA-3697-01 5 57790885 57790885 A G GAPT 3'UTR 0.29 TCGA-AA-3697-01 5 57879026 57879026 T C RAB3C 5'UTR 0.23 TCGA-AA-3697-01 5 71492967 71492967 C A MAP1B Missense_Mutation p.S1262Y 0.13 probably_damaging(0.949) TCGA-AA-3697-01 5 90136780 90136780 C T GPR98 Missense_Mutation p.A5666V 0.16 benign(0) TCGA-AA-3697-01 5 94859030 94859030 C A TTC37 Nonsense_Mutation p.E545* 0.24 TCGA-AA-3697-01 6 10830947 10830947 C T MAK 5'UTR 0.29 TCGA-AA-3697-01 6 117840978 117840978 G A DCBLD1 Splice_Site p.X109_splice 0.24 TCGA-AA-3697-01 6 125619937 125619937 C T HDDC2 Missense_Mutation p.D78N 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3697-01 6 132966989 132966989 T A TAAR1 Nonsense_Mutation p.K52* 0.18 TCGA-AA-3697-01 6 150342218 150342218 C G RAET1L Missense_Mutation p.D152H 0.18 deleterious(0) probably_damaging(0.934) TCGA-AA-3697-01 6 152762359 152762359 A C SYNE1 Missense_Mutation p.V1352G 0.12 probably_damaging(0.934) TCGA-AA-3697-01 6 158362000 158362000 C G SNX9 Nonsense_Mutation p.Y578* 0.41 TCGA-AA-3697-01 6 161528993 161528993 A G MAP3K4 Missense_Mutation p.M1371V 0.29 tolerated(0.16) probably_damaging(0.997) TCGA-AA-3697-01 6 24832583 24832583 T C FAM65B Missense_Mutation p.R770G 0.11 tolerated(0.1) benign(0.023) TCGA-AA-3697-01 6 29571074 29571074 C A GABBR1 3'UTR 0.12 TCGA-AA-3697-01 6 37420896 37420896 G A CMTR1 Missense_Mutation p.R228Q 0.52 deleterious(0.01) benign(0.104) TCGA-AA-3697-01 6 38917233 38917233 T A DNAH8 Silent p.S3828S 0.26 TCGA-AA-3697-01 6 4057423 4057423 T C PRPF4B Splice_Site p.X911_splice 0.31 TCGA-AA-3697-01 6 79655939 79655939 T A PHIP Missense_Mutation p.K1470I 0.22 deleterious(0.02) possibly_damaging(0.564) TCGA-AA-3697-01 7 100678518 100678518 G C MUC17 Missense_Mutation p.S1274T 0.22 unknown(0) TCGA-AA-3697-01 7 21908494 21908494 G T DNAH11 Missense_Mutation p.G3958V 0.13 probably_damaging(1) TCGA-AA-3697-01 7 31855647 31855647 C T PDE1C Silent p.T628T 0.03 TCGA-AA-3697-01 7 48068434 48068434 G T SUN3 Missense_Mutation p.D34E 0.46 tolerated_low_confidence(0.92) benign(0.001) TCGA-AA-3697-01 7 88965815 88965815 C G ZNF804B Silent p.L1173L 0.16 TCGA-AA-3697-01 7 94298494 94298494 G T PEG10 3'UTR 0.30 TCGA-AA-3697-01 7 95040970 95040970 A G PON2 Silent p.L163L 0.28 TCGA-AA-3697-01 7 99308387 99308387 G A CYP3A7 Nonsense_Mutation p.Q332* 0.09 TCGA-AA-3697-01 7 99688874 99688874 G T COPS6 Silent p.L221L 0.16 TCGA-AA-3697-01 7 99688875 99688875 A T COPS6 Missense_Mutation p.I222L 0.16 tolerated(0.77) benign(0.006) TCGA-AA-3697-01 7 99771576 99771576 G A GPC2 Silent p.I258I 0.50 TCGA-AA-3697-01 8 113569132 113569132 T G CSMD3 Missense_Mutation p.K1365T 0.12 deleterious(0) probably_damaging(1) TCGA-AA-3697-01 8 125076695 125076695 G T FER1L6 Missense_Mutation p.V1146L 0.20 tolerated(0.35) benign(0.002) TCGA-AA-3697-01 8 135524750 135524750 G A ZFAT Missense_Mutation p.A1110V 0.16 tolerated(0.11) benign(0.118) TCGA-AA-3697-01 8 139820056 139820056 C G COL22A1 Splice_Site p.X484_splice 0.15 TCGA-AA-3697-01 8 139833475 139833475 C T COL22A1 Silent p.A383A 0.34 TCGA-AA-3697-01 8 141542009 141542009 C T AGO2 3'UTR 0.25 TCGA-AA-3697-01 8 2855613 2855613 G A CSMD1 Missense_Mutation p.T2766M 0.26 benign(0.053) TCGA-AA-3697-01 8 42939944 42939944 G T FNTA Missense_Mutation p.A313S 0.55 tolerated(0.11) possibly_damaging(0.699) TCGA-AA-3697-01 8 61765571 61765571 A T CHD7 Missense_Mutation p.H2096L 0.15 probably_damaging(0.99) TCGA-AA-3697-01 8 75156995 75156995 G A JPH1 Silent p.N558N 0.17 TCGA-AA-3697-01 8 77766880 77766880 G T ZFHX4 Missense_Mutation p.A2575S 0.17 benign(0.069) TCGA-AA-3697-01 9 13219687 13219687 T C MPDZ Silent p.A319A 0.23 TCGA-AA-3697-01 9 135601045 135601045 C A AK8 3'UTR 0.26 TCGA-AA-3697-01 9 135601046 135601046 C T AK8 3'UTR 0.26 TCGA-AA-3697-01 9 16870683 16870683 T A BNC2 5'UTR 0.21 TCGA-AA-3697-01 9 35907098 35907098 G T HRCT1 3'UTR 0.22 TCGA-AA-3697-01 9 84208056 84208056 C T TLE1 Missense_Mutation p.A489T 0.31 deleterious(0.01) possibly_damaging(0.711) TCGA-AA-3697-01 X 117796705 117796705 G A DOCK11 Missense_Mutation p.E1676K 0.31 tolerated(0.07) possibly_damaging(0.799) TCGA-AA-3697-01 X 125685700 125685700 G T DCAF12L1 Missense_Mutation p.L298M 0.25 tolerated(0.07) benign(0.391) TCGA-AA-3697-01 X 12903671 12903672 TT - TLR7 Frame_Shift_Del p.F16* 0.24 TCGA-AA-3697-01 X 130220386 130220386 C G ARHGAP36 Missense_Mutation p.N455K 0.34 tolerated(1) benign(0.033) TCGA-AA-3697-01 X 132091108 132091108 G A HS6ST2 Silent p.G225G 0.76 TCGA-AA-3697-01 X 13607688 13607688 G A EGFL6 Missense_Mutation p.G30R 0.26 tolerated(1) benign(0.187) TCGA-AA-3697-01 X 138701840 138701840 A T MCF2 Nonsense_Mutation p.L298* 0.53 TCGA-AA-3697-01 X 138774173 138774173 G T MCF2 Intron 0.23 TCGA-AA-3697-01 X 139038063 139038063 T G CXorf66 Missense_Mutation p.N360H 0.28 deleterious(0) possibly_damaging(0.844) TCGA-AA-3697-01 X 152113842 152113842 G T ZNF185 Missense_Mutation p.A446S 0.05 tolerated(0.2) possibly_damaging(0.452) TCGA-AA-3697-01 X 152113884 152113884 C T ZNF185 Missense_Mutation p.P460S 0.26 tolerated(0.16) benign(0.281) TCGA-AA-3697-01 X 18748385 18748385 T C PPEF1 Missense_Mutation p.F45L 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3697-01 X 71802397 71802397 G A PHKA1 Missense_Mutation p.R1117C 0.53 deleterious(0.02) benign(0.049) TCGA-AA-3697-01 X 83351266 83351266 C A RPS6KA6 Missense_Mutation p.R636L 0.23 deleterious(0) possibly_damaging(0.845) TCGA-AA-3697-01 Y 2655497 2655497 C A SRY Nonsense_Mutation p.E50* 0.57 TCGA-AA-3712-01 10 102239685 102239685 G A WNT8B Missense_Mutation p.E53K 0.21 deleterious(0) probably_damaging(0.994) TCGA-AA-3712-01 10 1034367 1034367 C G GTPBP4 5'UTR 0.15 TCGA-AA-3712-01 10 112595636 112595636 C G RBM20 Missense_Mutation p.S1195C 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3712-01 10 16806406 16806406 G T RSU1 Silent p.L88L 0.17 TCGA-AA-3712-01 10 25883189 25883189 T G GPR158 Intron 0.16 TCGA-AA-3712-01 10 37482113 37482113 G C ANKRD30A Splice_Site p.X792_splice 0.12 TCGA-AA-3712-01 10 50818990 50818990 C T SLC18A3 Silent p.G68G 0.48 TCGA-AA-3712-01 10 52389600 52389600 G C RP11-50E11.3 RNA 0.13 TCGA-AA-3712-01 10 52389863 52389863 G C RP11-50E11.3 RNA 0.19 TCGA-AA-3712-01 10 75009304 75009304 G C MRPS16 3'UTR 0.33 TCGA-AA-3712-01 10 82277832 82277832 G A TSPAN14 3'UTR 0.19 TCGA-AA-3712-01 10 99080916 99080916 G T FRAT1 3'UTR 0.25 TCGA-AA-3712-01 11 106680748 106680748 G T GUCY1A2 Missense_Mutation p.H555N 0.27 tolerated(0.15) benign(0.3) TCGA-AA-3712-01 11 1265339 1265339 A G MUC5B Missense_Mutation p.N2410S 0.28 unknown(0) TCGA-AA-3712-01 11 55681187 55681187 C A OR5W2 Missense_Mutation p.S291I 0.27 deleterious(0) possibly_damaging(0.701) TCGA-AA-3712-01 11 60235818 60235818 G T MS4A1 Missense_Mutation p.K257N 0.59 deleterious(0.05) possibly_damaging(0.894) TCGA-AA-3712-01 11 62439425 62439425 G T C11orf83 Nonsense_Mutation p.E41* 0.39 TCGA-AA-3712-01 11 62439538 62439538 G A C11orf83 Silent p.K78K 0.34 TCGA-AA-3712-01 11 764979 764979 A G TALDO1 3'UTR 0.14 TCGA-AA-3712-01 11 99690448 99690448 T C CNTN5 Missense_Mutation p.Y77H 0.06 tolerated_low_confidence(0.56) benign(0.001) TCGA-AA-3712-01 12 11244601 11244601 A G TAS2R43 Silent p.N76N 0.39 TCGA-AA-3712-01 12 1902897 1902897 G A CACNA2D4 Missense_Mutation p.S1113L 0.25 tolerated(0.07) benign(0.006) TCGA-AA-3712-01 12 27840368 27840368 C G PPFIBP1 Missense_Mutation p.I772M 0.20 deleterious(0) probably_damaging(0.987) TCGA-AA-3712-01 12 49164715 49164715 G T ADCY6 Silent p.I1030I 0.20 TCGA-AA-3712-01 12 52647090 52647090 G A KRT7 3'Flank 0.25 TCGA-AA-3712-01 12 57128014 57128014 C T PRIM1 Missense_Mutation p.S387N 0.23 deleterious(0) possibly_damaging(0.77) TCGA-AA-3712-01 12 57920459 57920459 C A MBD6 Missense_Mutation p.P511T 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3712-01 12 83250836 83250836 C T TMTC2 Missense_Mutation p.T44M 0.28 tolerated(0.21) benign(0.186) TCGA-AA-3712-01 13 110830409 110830409 A C COL4A1 Splice_Site p.X876_splice 0.39 TCGA-AA-3712-01 13 26104793 26104793 G T ATP8A2 Missense_Mutation p.D139Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-3712-01 13 41303711 41303711 G C MRPS31 Missense_Mutation p.H329D 0.20 deleterious(0) probably_damaging(0.973) TCGA-AA-3712-01 13 49096050 49096050 G C RCBTB2 Missense_Mutation p.S9C 0.12 tolerated_low_confidence(0.18) benign(0) TCGA-AA-3712-01 13 58208048 58208048 G T PCDH17 Missense_Mutation p.K456N 0.47 deleterious(0) probably_damaging(0.986) TCGA-AA-3712-01 13 88328858 88328858 G T SLITRK5 Missense_Mutation p.Q405H 0.26 tolerated(0.51) benign(0.006) TCGA-AA-3712-01 13 99907874 99907874 C A GPR18 Missense_Mutation p.D85Y 0.16 deleterious(0.04) benign(0.416) TCGA-AA-3712-01 14 103420574 103420574 C T CDC42BPB Silent p.P1009P 0.39 TCGA-AA-3712-01 14 23540475 23540475 C G ACIN1 Intron 0.23 TCGA-AA-3712-01 14 94464502 94464502 A G LINC00521 RNA 0.34 TCGA-AA-3712-01 14 94933552 94933552 C G SERPINA9 Missense_Mutation p.D284H 0.38 deleterious(0.04) benign(0.051) TCGA-AA-3712-01 15 55759201 55759201 A T DYX1C1 Silent p.I188I 0.04 TCGA-AA-3712-01 15 59376336 59376336 A G RNF111 Missense_Mutation p.H778R 0.46 deleterious(0) probably_damaging(0.995) TCGA-AA-3712-01 15 62361006 62361006 G C C2CD4A 3'UTR 0.29 TCGA-AA-3712-01 15 63031654 63031654 G A TLN2 Silent p.Q1265Q 0.27 TCGA-AA-3712-01 15 65849121 65849121 G A PTPLAD1 Silent p.Q83Q 0.18 TCGA-AA-3712-01 15 66604061 66604061 G C DIS3L Splice_Site p.X187_splice 0.20 TCGA-AA-3712-01 15 68582375 68582375 G A FEM1B Missense_Mutation p.A227T 0.22 deleterious(0) probably_damaging(0.961) TCGA-AA-3712-01 15 74836313 74836313 G A ARID3B Silent p.Q12Q 0.26 TCGA-AA-3712-01 15 78305220 78305220 G T TBC1D2B Missense_Mutation p.L739I 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3712-01 16 2122849 2122849 G A TSC2 Splice_Site p.X741_splice 0.16 TCGA-AA-3712-01 16 27712926 27712926 C T KIAA0556 Missense_Mutation p.T399M 0.24 tolerated(0.14) benign(0.01) TCGA-AA-3712-01 16 3075959 3075959 G A THOC6 Missense_Mutation p.E64K 0.22 tolerated(0.35) benign(0.046) TCGA-AA-3712-01 16 49671356 49671356 G A ZNF423 Silent p.T569T 0.24 TCGA-AA-3712-01 16 51171277 51171277 G A SALL1 Missense_Mutation p.L1241F 0.18 tolerated(0.19) benign(0.003) TCGA-AA-3712-01 16 70972635 70972635 C G HYDIN Missense_Mutation p.E2293Q 0.18 benign(0.003) TCGA-AA-3712-01 16 71805132 71805132 G A AP1G1 Silent p.V164V 0.19 TCGA-AA-3712-01 17 18149941 18149941 C G FLII Missense_Mutation p.K1006N 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-3712-01 17 19232890 19232890 C A EPN2 Missense_Mutation p.F447L 0.19 tolerated(0.06) possibly_damaging(0.695) TCGA-AA-3712-01 17 26970191 26970191 G T KIAA0100 Silent p.I129I 0.29 TCGA-AA-3712-01 17 40696067 40696067 G A NAGLU Silent p.A681A 0.14 TCGA-AA-3712-01 17 48156857 48156857 G C ITGA3 Missense_Mutation p.G881A 0.20 tolerated(0.76) benign(0.012) TCGA-AA-3712-01 17 48703530 48703530 C G CACNA1G Missense_Mutation p.H2184Q 0.19 tolerated(1) benign(0) TCGA-AA-3712-01 17 48703531 48703531 A C CACNA1G Missense_Mutation p.S2185R 0.20 tolerated(0.37) benign(0.128) TCGA-AA-3712-01 17 62080315 62080315 C T C17orf72 3'Flank 0.19 TCGA-AA-3712-01 17 6683781 6683781 C G FBXO39 Silent p.L198L 0.36 TCGA-AA-3712-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.70 deleterious(0.01) probably_damaging(1) TCGA-AA-3712-01 18 43671809 43671809 C G ATP5A1 Missense_Mutation p.E50Q 0.34 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-AA-3712-01 19 16874747 16874747 G T NWD1 Nonsense_Mutation p.E748* 0.13 TCGA-AA-3712-01 19 17394221 17394221 C T ANKLE1 Silent p.S216S 0.33 TCGA-AA-3712-01 19 1791795 1791795 G C ATP8B3 Silent p.L752L 0.27 TCGA-AA-3712-01 19 18232580 18232580 A G MAST3 Missense_Mutation p.T53A 0.40 tolerated(0.14) benign(0.074) TCGA-AA-3712-01 19 40424487 40424487 C G FCGBP Missense_Mutation p.Q572H 0.19 possibly_damaging(0.53) TCGA-AA-3712-01 19 41386095 41386095 C G CYP2A7 Missense_Mutation p.S183T 0.23 deleterious(0.01) benign(0.437) TCGA-AA-3712-01 19 4216001 4216001 C T ANKRD24 Silent p.D408D 0.17 TCGA-AA-3712-01 19 43348720 43348720 C T PSG10P RNA 0.34 TCGA-AA-3712-01 19 49340514 49340514 C T PLEKHA4 3'UTR 0.29 TCGA-AA-3712-01 19 49486095 49486095 C G GYS1 Splice_Site p.X275_splice 0.19 TCGA-AA-3712-01 19 49993259 49993259 G C RPL13A Intron 0.18 TCGA-AA-3712-01 19 49994198 49994198 G C RPL13A Intron 0.24 TCGA-AA-3712-01 19 49994985 49994985 G A RPL13A Splice_Site p.X176_splice 0.23 TCGA-AA-3712-01 19 50805048 50805048 G T MYH14 Missense_Mutation p.R1867L 0.16 deleterious(0.03) possibly_damaging(0.851) TCGA-AA-3712-01 19 55399736 55399736 C T FCAR Intron 0.26 TCGA-AA-3712-01 19 7083124 7083124 C G ZNF557 Missense_Mutation p.S221C 0.15 deleterious(0.03) probably_damaging(0.938) TCGA-AA-3712-01 19 9091064 9091064 C T MUC16 Missense_Mutation p.E251K 0.27 unknown(0) TCGA-AA-3712-01 1 109172243 109172243 G A FAM102B Missense_Mutation p.G335E 0.34 deleterious(0) benign(0.246) TCGA-AA-3712-01 1 110884141 110884141 G C RBM15 Missense_Mutation p.R705T 0.13 tolerated(0.07) benign(0.074) TCGA-AA-3712-01 1 110884239 110884239 G A RBM15 Missense_Mutation p.E738K 0.32 tolerated(0.29) benign(0.075) TCGA-AA-3712-01 1 117120153 117120153 G A IGSF3 Silent p.N1142N 0.26 TCGA-AA-3712-01 1 145538746 145538746 G T ITGA10 Nonsense_Mutation p.E953* 0.27 TCGA-AA-3712-01 1 149858683 149858683 G A HIST2H2AC Silent p.A53A 0.21 TCGA-AA-3712-01 1 172544712 172544712 G A SUCO Silent p.R404R 0.38 TCGA-AA-3712-01 1 173916541 173916541 A G RC3H1 Silent p.P901P 0.17 TCGA-AA-3712-01 1 183261970 183261970 C T NMNAT2 Missense_Mutation p.R66H 0.51 deleterious(0) probably_damaging(1) TCGA-AA-3712-01 1 228538630 228538630 G A OBSCN Silent p.P7092P 0.25 TCGA-AA-3712-01 1 234350280 234350280 C T SLC35F3 Intron 0.45 TCGA-AA-3712-01 1 247151255 247151255 C G ZNF695 Missense_Mutation p.E188Q 0.32 deleterious(0.05) benign(0.401) TCGA-AA-3712-01 1 247201499 247201499 T C ZNF670 Missense_Mutation p.Y141C 0.52 deleterious(0.01) benign(0.167) TCGA-AA-3712-01 1 248487421 248487421 G A OR2M7 Silent p.I150I 0.45 TCGA-AA-3712-01 1 248685115 248685115 C T OR2G6 Silent p.H56H 0.20 TCGA-AA-3712-01 1 39853533 39853533 G C MACF1 Missense_Mutation p.E2945Q 0.32 probably_damaging(0.999) TCGA-AA-3712-01 1 55523730 55523730 C A PCSK9 Missense_Mutation p.S401Y 0.36 deleterious(0) possibly_damaging(0.902) TCGA-AA-3712-01 1 68624836 68624836 C A WLS Silent p.R156R 0.27 TCGA-AA-3712-01 1 94342296 94342296 C T DNTTIP2 Missense_Mutation p.D399N 0.36 tolerated(0.13) benign(0.012) TCGA-AA-3712-01 20 1559126 1559126 C T RP4-576H24.4 Silent p.K96K 0.10 TCGA-AA-3712-01 20 17950977 17950977 G A MGME1 Missense_Mutation p.E159K 0.08 tolerated(0.1) possibly_damaging(0.688) TCGA-AA-3712-01 20 31878791 31878791 C T BPIFB1 Missense_Mutation p.H132Y 0.10 deleterious(0.04) benign(0.093) TCGA-AA-3712-01 20 42232863 42232863 T G IFT52 Silent p.P126P 0.46 TCGA-AA-3712-01 20 47734382 47734382 C T STAU1 Missense_Mutation p.V481I 0.10 tolerated(0.36) benign(0.002) TCGA-AA-3712-01 20 60294134 60294134 C T RP11-429E11.3 Silent p.S31S 0.11 TCGA-AA-3712-01 20 61450603 61450603 G A COL9A3 Silent p.G71G 0.50 TCGA-AA-3712-01 21 41668099 41668099 G T DSCAM Missense_Mutation p.P689T 0.44 deleterious(0) possibly_damaging(0.883) TCGA-AA-3712-01 22 21363828 21363828 C A AC002472.1 5'Flank 0.19 TCGA-AA-3712-01 22 22385631 22385631 C A IGLV4-69 Silent p.L40L 0.30 TCGA-AA-3712-01 22 26868279 26868279 C T HPS4 Missense_Mutation p.D164N 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3712-01 22 30688387 30688387 C T TBC1D10A Missense_Mutation p.E509K 0.21 deleterious_low_confidence(0.01) benign(0.184) TCGA-AA-3712-01 22 33265080 33265080 C T SYN3 Missense_Mutation p.R165H 0.35 deleterious(0.02) unknown(0) TCGA-AA-3712-01 22 46656462 46656462 C T PKDREJ Missense_Mutation p.D920N 0.23 tolerated(0.19) benign(0.008) TCGA-AA-3712-01 2 10584768 10584768 A G ODC1 Silent p.D36D 0.25 TCGA-AA-3712-01 2 114258570 114258570 C G FOXD4L1 3'UTR 0.23 TCGA-AA-3712-01 2 166019223 166019223 C G SCN3A Missense_Mutation p.M270I 0.24 deleterious(0) benign(0.004) TCGA-AA-3712-01 2 234628118 234628118 C G UGT1A4 Missense_Mutation p.L218V 0.22 tolerated(0.29) benign(0.122) TCGA-AA-3712-01 2 25141470 25141470 C A ADCY3 Silent p.L129L 0.26 TCGA-AA-3712-01 2 29237418 29237418 C T FAM179A Silent p.I345I 0.50 TCGA-AA-3712-01 2 74043855 74043855 C A C2orf78 Silent p.L835L 0.29 TCGA-AA-3712-01 2 85555050 85555050 G T TGOLN2 Silent p.V12V 0.49 TCGA-AA-3712-01 2 8871477 8871477 G C KIDINS220 Missense_Mutation p.I1563M 0.24 deleterious_low_confidence(0.04) benign(0.197) TCGA-AA-3712-01 3 111368648 111368648 C A CD96 Missense_Mutation p.L585I 0.08 deleterious(0) probably_damaging(0.991) TCGA-AA-3712-01 3 128580486 128580486 C G RP11-723O4.9 5'Flank 0.24 TCGA-AA-3712-01 3 130312062 130312062 G A COL6A6 Missense_Mutation p.G1479E 0.20 deleterious(0) probably_damaging(1) TCGA-AA-3712-01 3 141896385 141896386 - T GK5 Frame_Shift_Ins p.M361Nfs*9 0.31 TCGA-AA-3712-01 3 149686268 149686268 C T PFN2 Missense_Mutation p.A68T 0.24 deleterious(0.03) benign(0.007) TCGA-AA-3712-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-AA-3712-01 3 181431542 181431543 - A SOX2 3'UTR 0.37 TCGA-AA-3712-01 3 195997364 195997364 C T PCYT1A Silent p.K13K 0.17 TCGA-AA-3712-01 3 52441212 52441212 C T BAP1 Silent p.L186L 0.37 TCGA-AA-3712-01 4 114284516 114284516 C T ANK2 Silent p.F3593F 0.40 TCGA-AA-3712-01 4 141607513 141607513 C G TBC1D9 Silent p.V115V 0.18 TCGA-AA-3712-01 4 155254420 155254420 G T DCHS2 Silent p.L481L 0.22 TCGA-AA-3712-01 4 54876122 54876122 A C CHIC2 3'UTR 0.31 TCGA-AA-3712-01 4 55561913 55561913 C T KIT Silent p.H101H 0.49 TCGA-AA-3712-01 4 57244513 57244513 C A AASDH Missense_Mutation p.D157Y 0.44 deleterious(0.03) benign(0.12) TCGA-AA-3712-01 4 69973919 69973919 G T UGT2B7 Missense_Mutation p.A397S 0.10 tolerated(0.07) benign(0.009) TCGA-AA-3712-01 4 69973920 69973920 C G UGT2B7 Missense_Mutation p.A397G 0.10 tolerated(0.61) benign(0.001) TCGA-AA-3712-01 5 112154958 112154958 T A APC Nonsense_Mutation p.L410* 0.62 TCGA-AA-3712-01 5 118445871 118445871 C G DMXL1 Missense_Mutation p.S130R 0.19 tolerated(0.06) benign(0.183) TCGA-AA-3712-01 5 137242084 137242084 C G PKD2L2 Missense_Mutation p.F312L 0.20 tolerated(0.17) benign(0.096) TCGA-AA-3712-01 5 140230372 140230372 G A PCDHA9 Silent p.K764K 0.21 TCGA-AA-3712-01 5 176519378 176519378 G A FGFR4 Missense_Mutation p.V262M 0.27 deleterious(0.02) benign(0.393) TCGA-AA-3712-01 5 179016613 179016613 G A RUFY1 Missense_Mutation p.E365K 0.23 tolerated(0.3) probably_damaging(0.99) TCGA-AA-3712-01 5 26885801 26885801 C T CDH9 Missense_Mutation p.A602T 0.18 tolerated(0.28) benign(0.004) TCGA-AA-3712-01 5 32355693 32355693 C G ZFR 3'UTR 0.21 TCGA-AA-3712-01 5 68553960 68553960 C A CDK7 Missense_Mutation p.Q130K 0.32 tolerated(0.95) benign(0.045) TCGA-AA-3712-01 5 71756421 71756421 C T ZNF366 Silent p.L301L 0.23 TCGA-AA-3712-01 5 76708933 76708933 C T PDE8B Intron 0.20 TCGA-AA-3712-01 5 94772583 94772583 G A FAM81B Missense_Mutation p.R289H 0.22 tolerated(0.97) benign(0.003) TCGA-AA-3712-01 6 112493887 112493887 C G LAMA4 Missense_Mutation p.D493H 0.22 tolerated(0.28) benign(0.021) TCGA-AA-3712-01 6 119300538 119300538 G T FAM184A Missense_Mutation p.A816D 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-AA-3712-01 6 161071485 161071485 C A LPA Missense_Mutation p.D32Y 0.27 tolerated(0.09) possibly_damaging(0.881) TCGA-AA-3712-01 6 26189100 26189100 C T HIST1H4D Missense_Mutation p.D69N 0.25 deleterious(0.03) possibly_damaging(0.618) TCGA-AA-3712-01 6 31592092 31592092 G T PRRC2A Missense_Mutation p.Q115H 0.20 unknown(0) TCGA-AA-3712-01 6 42712914 42712914 C T TBCC Missense_Mutation p.D300N 0.19 deleterious(0.01) benign(0.203) TCGA-AA-3712-01 6 42823599 42823599 G A GLTSCR1L Silent p.E684E 0.26 TCGA-AA-3712-01 6 52103718 52103718 G T IL17F Missense_Mutation p.L22I 0.32 tolerated(0.19) benign(0.008) TCGA-AA-3712-01 6 99285751 99285751 G A POU3F2 3'UTR 0.23 TCGA-AA-3712-01 7 102108195 102108195 C T LRWD1 Silent p.A201A 0.16 TCGA-AA-3712-01 7 120884270 120884270 C T CPED1 Missense_Mutation p.P730S 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3712-01 7 123296068 123296068 C T LMOD2 Silent p.D17D 0.60 TCGA-AA-3712-01 7 141740554 141740554 C T MGAM Silent p.V802V 0.16 TCGA-AA-3712-01 7 142637673 142637673 G A C7orf34 Silent p.%3D 0.17 TCGA-AA-3712-01 7 147869490 147869490 G C CNTNAP2 Missense_Mutation p.G977A 0.18 deleterious(0) probably_damaging(0.993) TCGA-AA-3712-01 7 147914606 147914606 C G CNTNAP2 Silent p.V1079V 0.18 TCGA-AA-3712-01 7 150034976 150034976 C T LRRC61 3'UTR 0.53 TCGA-AA-3712-01 7 17375267 17375267 A T AHR Splice_Site p.X340_splice 0.10 TCGA-AA-3712-01 7 42007370 42007370 G A GLI3 Missense_Mutation p.S752L 0.16 deleterious(0) possibly_damaging(0.781) TCGA-AA-3712-01 7 4308165 4308165 G A SDK1 3'UTR 0.34 TCGA-AA-3712-01 7 44150659 44150659 G C AEBP1 Intron 0.19 TCGA-AA-3712-01 7 44228568 44228568 C T GCK 5'UTR 0.24 TCGA-AA-3712-01 7 99691873 99691873 C T MCM7 Missense_Mutation p.E591K 0.18 tolerated(0.05) possibly_damaging(0.752) TCGA-AA-3712-01 8 103284962 103284962 C T UBR5 Missense_Mutation p.M2256I 0.17 tolerated(0.06) benign(0.183) TCGA-AA-3712-01 8 110457584 110457584 G T PKHD1L1 Missense_Mutation p.S1829I 0.26 deleterious(0) probably_damaging(0.913) TCGA-AA-3712-01 8 116426166 116426167 - A TRPS1 3'UTR 0.13 TCGA-AA-3712-01 8 144877627 144877627 G A SCRIB Missense_Mutation p.S1226F 0.21 probably_damaging(0.943) TCGA-AA-3712-01 8 146107769 146107769 G C ZNF250 Missense_Mutation p.Q272E 0.14 tolerated(0.24) possibly_damaging(0.785) TCGA-AA-3712-01 8 38275843 38275843 G A FGFR1 Missense_Mutation p.R476W 0.14 deleterious(0) probably_damaging(0.999) TCGA-AA-3712-01 8 42012237 42012237 C T AP3M2 Missense_Mutation p.S11F 0.22 deleterious(0) possibly_damaging(0.595) TCGA-AA-3712-01 8 52744015 52744015 G A PCMTD1 Missense_Mutation p.S232F 0.15 tolerated(0.34) benign(0.001) TCGA-AA-3712-01 9 129595261 129595261 G A ZBTB43 Missense_Mutation p.G158D 0.76 tolerated(0.1) probably_damaging(0.992) TCGA-AA-3712-01 9 27950127 27950127 C T LINGO2 Silent p.Q181Q 0.34 TCGA-AA-3712-01 9 35717705 35717705 G A TLN1 Missense_Mutation p.R692W 0.45 deleterious(0.01) possibly_damaging(0.511) TCGA-AA-3712-01 9 94877625 94877625 G T SPTLC1 Missense_Mutation p.L10M 0.27 tolerated(0.19) benign(0.029) TCGA-AA-3712-01 9 97084525 97084525 G A NUTM2F Missense_Mutation p.T267M 0.65 deleterious(0.04) benign(0.404) TCGA-AA-3712-01 X 102755640 102755640 G C RAB40A Silent p.L15L 0.28 TCGA-AA-3712-01 X 107863580 107863580 C T COL4A5 Silent p.I867I 0.41 TCGA-AA-3712-01 X 117707961 117707961 C G DOCK11 Missense_Mutation p.Q457E 0.20 tolerated(0.05) benign(0) TCGA-AA-3712-01 X 155005696 155005696 G A SPRY3 3'UTR 0.14 TCGA-AA-3712-01 X 72297954 72297954 C T PABPC1L2A 3'UTR 0.14 TCGA-AA-3712-01 X 7811792 7811792 A C VCX Missense_Mutation p.E119A 0.42 tolerated(0.61) unknown(0) TCGA-AA-3712-01 X 8138137 8138137 T G VCX2 Missense_Mutation p.E119A 0.61 tolerated_low_confidence(0.18) unknown(0) TCGA-AA-3712-01 Y 14958901 14958901 A G USP9Y Silent p.S2266S 0.79 TCGA-AA-3712-01 Y 16952992 16952992 G A NLGN4Y Silent p.S767S 0.78 TCGA-AA-3712-01 Y 4967117 4967117 C G PCDH11Y Missense_Mutation p.Q500E 0.40 deleterious(0.04) possibly_damaging(0.519) TCGA-AA-3713-01 10 100152236 100152236 G A PYROXD2 Silent p.L339L 0.15 TCGA-AA-3713-01 10 101439208 101439208 A - ENTPD7 Frame_Shift_Del p.I130Sfs*23 0.29 TCGA-AA-3713-01 10 101462388 101462388 C T ENTPD7 Missense_Mutation p.T514M 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 10 101636822 101636822 G A DNMBP 3'UTR 0.31 TCGA-AA-3713-01 10 102048209 102048209 C T PKD2L1 Missense_Mutation p.A788T 0.30 tolerated_low_confidence(0.1) possibly_damaging(0.483) TCGA-AA-3713-01 10 103898675 103898675 C T PPRC1 Missense_Mutation p.R177C 0.24 tolerated(0.06) probably_damaging(0.995) TCGA-AA-3713-01 10 104142046 104142046 G T GBF1 Missense_Mutation p.A1845S 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3713-01 10 104497467 104497467 A G SFXN2 Missense_Mutation p.K306R 0.23 tolerated(0.74) benign(0.001) TCGA-AA-3713-01 10 104836841 104836841 C T CNNM2 Silent p.D844D 0.43 TCGA-AA-3713-01 10 105215423 105215423 C T CALHM1 Missense_Mutation p.A213T 0.28 tolerated(0.38) possibly_damaging(0.738) TCGA-AA-3713-01 10 116233676 116233676 C A ABLIM1 Missense_Mutation p.G361C 0.47 deleterious(0) possibly_damaging(0.653) TCGA-AA-3713-01 10 116335217 116335217 C T ABLIM1 Missense_Mutation p.G174D 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3713-01 10 116621264 116621264 G A FAM160B1 Missense_Mutation p.A755T 0.26 deleterious(0) probably_damaging(0.98) TCGA-AA-3713-01 10 12041944 12041944 C T UPF2 Silent p.Q573Q 0.26 TCGA-AA-3713-01 10 12071305 12071305 C T UPF2 Missense_Mutation p.G195D 0.21 tolerated(0.12) benign(0.315) TCGA-AA-3713-01 10 120900644 120900644 A G SFXN4 3'UTR 0.38 TCGA-AA-3713-01 10 123239458 123239458 T C FGFR2 Silent p.G794G 0.28 TCGA-AA-3713-01 10 123324054 123324054 C T FGFR2 Missense_Mutation p.G139D 0.30 tolerated(0.64) benign(0.407) TCGA-AA-3713-01 10 126100644 126100644 T - OAT Frame_Shift_Del p.T33Qfs*28 0.16 TCGA-AA-3713-01 10 12856259 12856259 C T CAMK1D Missense_Mutation p.A236V 0.32 deleterious(0) possibly_damaging(0.715) TCGA-AA-3713-01 10 129676641 129676641 C T CLRN3 Silent p.T151T 0.26 TCGA-AA-3713-01 10 134595573 134595573 C T INPP5A 3'UTR 0.27 TCGA-AA-3713-01 10 134735701 134735701 C T TTC40 Missense_Mutation p.V505I 0.31 tolerated(0.13) probably_damaging(0.975) TCGA-AA-3713-01 10 135024969 135024969 C T KNDC1 Missense_Mutation p.R1318W 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 10 135368871 135368871 G T SYCE1 Missense_Mutation p.A301D 0.23 tolerated(0.14) benign(0.02) TCGA-AA-3713-01 10 15107665 15107665 C - OLAH Frame_Shift_Del p.K217Sfs*10 0.24 TCGA-AA-3713-01 10 15183499 15183500 - T NMT2 Frame_Shift_Ins p.E57Gfs*15 0.24 TCGA-AA-3713-01 10 21807013 21807013 A - SKIDA1 5'UTR 0.19 TCGA-AA-3713-01 10 24669902 24669902 G - KIAA1217 Frame_Shift_Del p.D155Mfs*19 0.24 TCGA-AA-3713-01 10 27366333 27366333 G A ANKRD26 Silent p.T337T 0.20 TCGA-AA-3713-01 10 27529319 27529319 G C ACBD5 Missense_Mutation p.A37G 0.24 tolerated(0.13) benign(0.262) TCGA-AA-3713-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.22 TCGA-AA-3713-01 10 3202059 3202059 C T PITRM1 Missense_Mutation p.V330I 0.32 tolerated(0.41) benign(0.126) TCGA-AA-3713-01 10 42916350 42916350 C T CCNYL2 RNA 0.22 TCGA-AA-3713-01 10 43019154 43019154 G A ZNF37BP RNA 0.27 TCGA-AA-3713-01 10 43600638 43600638 G T RET Missense_Mutation p.K288N 0.27 tolerated(0.14) possibly_damaging(0.58) TCGA-AA-3713-01 10 45498896 45498896 G A ZNF22 Missense_Mutation p.G27D 0.21 tolerated(0.05) benign(0.022) TCGA-AA-3713-01 10 46246265 46246265 C T FAM21C Nonsense_Mutation p.R304* 0.29 TCGA-AA-3713-01 10 46252580 46252580 A - FAM21C Frame_Shift_Del p.K516Rfs*41 0.17 TCGA-AA-3713-01 10 49988141 49988141 G T WDFY4 Nonsense_Mutation p.G1185* 0.27 TCGA-AA-3713-01 10 49994735 49994735 G A WDFY4 Missense_Mutation p.A1210T 0.18 tolerated(0.26) benign(0.043) TCGA-AA-3713-01 10 50340020 50340020 A G FAM170B Missense_Mutation p.W164R 0.29 tolerated(0.15) possibly_damaging(0.88) TCGA-AA-3713-01 10 51465056 51465056 G A AGAP7 Missense_Mutation p.A467V 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-AA-3713-01 10 53457714 53457714 G A CSTF2T Silent p.G532G 0.28 TCGA-AA-3713-01 10 55582737 55582737 C A PCDH15 Missense_Mutation p.R1585S 0.26 deleterious_low_confidence(0.03) benign(0.15) TCGA-AA-3713-01 10 5960396 5960396 C T FBXO18 Silent p.N736N 0.25 TCGA-AA-3713-01 10 6104183 6104183 G A IL2RA 5'UTR 0.33 TCGA-AA-3713-01 10 61828580 61828580 T - ANK3 Frame_Shift_Del p.K4020Rfs*45 0.22 TCGA-AA-3713-01 10 61829480 61829480 G A ANK3 Missense_Mutation p.T3720M 0.32 possibly_damaging(0.63) TCGA-AA-3713-01 10 61941098 61941098 C T ANK3 Missense_Mutation p.A725T 0.29 benign(0.061) TCGA-AA-3713-01 10 70980227 70980227 C T HKDC1 Silent p.S12S 0.21 TCGA-AA-3713-01 10 73511467 73511467 G - C10orf54 Frame_Shift_Del p.L286Cfs*51 0.18 TCGA-AA-3713-01 10 7409728 7409728 G A SFMBT2 Missense_Mutation p.R107C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 10 74692338 74692338 C - OIT3 3'UTR 0.09 TCGA-AA-3713-01 10 75613005 75613005 C T CAMK2G Splice_Site p.X74_splice 0.26 TCGA-AA-3713-01 10 86273341 86273341 A T CCSER2 3'UTR 0.22 TCGA-AA-3713-01 10 88753302 88753302 C T RP11-96C23.14 RNA 0.38 TCGA-AA-3713-01 10 95372506 95372506 C T PDE6C Silent p.A8A 0.24 TCGA-AA-3713-01 10 96602716 96602716 A G CYP2C19 Missense_Mutation p.I362V 0.25 tolerated(1) benign(0.003) TCGA-AA-3713-01 10 97779208 97779208 C T CC2D2B Intron 0.48 TCGA-AA-3713-01 10 98802685 98802685 C T SLIT1 Missense_Mutation p.A713T 0.21 deleterious(0.03) possibly_damaging(0.854) TCGA-AA-3713-01 10 99236707 99236707 T C MMS19 Silent p.L169L 0.11 TCGA-AA-3713-01 11 105881612 105881612 A C MSANTD4 Missense_Mutation p.N11K 0.23 deleterious(0) possibly_damaging(0.836) TCGA-AA-3713-01 11 10647940 10647940 C A MRVI1 Missense_Mutation p.G314V 0.33 deleterious(0) probably_damaging(0.988) TCGA-AA-3713-01 11 1098669 1098669 C - MUC2 Frame_Shift_Del p.P2348Rfs*93 0.24 TCGA-AA-3713-01 11 113815411 113815412 - T HTR3B Frame_Shift_Ins p.R343Sfs*7 0.22 TCGA-AA-3713-01 11 117038352 117038352 G A PAFAH1B2 Silent p.L209L 0.33 TCGA-AA-3713-01 11 117097898 117097898 G A PCSK7 Silent p.G248G 0.26 TCGA-AA-3713-01 11 117340680 117340680 G - DSCAML1 Frame_Shift_Del p.M1051Wfs*8 0.25 TCGA-AA-3713-01 11 118037747 118037747 C - SCN2B Frame_Shift_Del p.G168Afs*10 0.26 TCGA-AA-3713-01 11 118355585 118355585 T C KMT2A Silent p.C1409C 0.07 TCGA-AA-3713-01 11 120198298 120198298 C A TMEM136 Missense_Mutation p.L72I 0.21 tolerated(0.16) possibly_damaging(0.499) TCGA-AA-3713-01 11 120998820 120998820 G A TECTA Missense_Mutation p.V712M 0.22 deleterious(0.02) benign(0.207) TCGA-AA-3713-01 11 121459996 121459996 T C SORL1 Silent p.C1325C 0.24 TCGA-AA-3713-01 11 121478832 121478832 G A SORL1 Missense_Mutation p.R1729H 0.26 tolerated(0.08) probably_damaging(0.984) TCGA-AA-3713-01 11 123624856 123624856 A C OR6X1 Missense_Mutation p.I124S 0.24 deleterious(0) probably_damaging(0.988) TCGA-AA-3713-01 11 124740994 124740995 - C ROBO3 Frame_Shift_Ins p.P376Tfs*35 0.22 TCGA-AA-3713-01 11 1247925 1247925 C T MUC5B Missense_Mutation p.R94C 0.28 unknown(0) TCGA-AA-3713-01 11 125888244 125888244 G T CDON Silent p.G207G 0.25 TCGA-AA-3713-01 11 128680837 128680837 G A FLI1 Missense_Mutation p.R438H 0.29 tolerated(0.06) probably_damaging(0.963) TCGA-AA-3713-01 11 13513889 13513889 A G PTH 3'UTR 0.57 TCGA-AA-3713-01 11 17098743 17098743 G T RPS13 Silent p.A41A 0.41 TCGA-AA-3713-01 11 18741820 18741820 T C IGSF22 Missense_Mutation p.T131A 0.21 tolerated(0.06) benign(0.04) TCGA-AA-3713-01 11 20652255 20652255 C A SLC6A5 Silent p.T506T 0.28 TCGA-AA-3713-01 11 27390454 27390454 C T LGR4 Missense_Mutation p.A606T 0.22 deleterious(0) possibly_damaging(0.871) TCGA-AA-3713-01 11 28057918 28057918 A G KIF18A Silent p.L748L 0.24 TCGA-AA-3713-01 11 3038449 3038449 G A CARS Missense_Mutation p.R602W 0.29 deleterious(0) probably_damaging(0.997) TCGA-AA-3713-01 11 3249288 3249288 G - MRGPRE Frame_Shift_Del p.H247Tfs*63 0.29 TCGA-AA-3713-01 11 32956116 32956116 C T QSER1 Silent p.G975G 0.23 TCGA-AA-3713-01 11 33689568 33689568 G C KIAA1549L Missense_Mutation p.Q1806H 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3713-01 11 34182513 34182515 CTC - ABTB2 In_Frame_Del p.E778del 0.22 TCGA-AA-3713-01 11 36600718 36600719 - T RAG1 3'UTR 0.20 TCGA-AA-3713-01 11 40137102 40137102 T - LRRC4C Frame_Shift_Del p.K247Nfs*4 0.24 TCGA-AA-3713-01 11 43351596 43351596 A - API5 Frame_Shift_Del p.T405Qfs*11 0.24 TCGA-AA-3713-01 11 43423022 43423022 A G TTC17 Missense_Mutation p.N416D 0.29 tolerated(0.45) benign(0.005) TCGA-AA-3713-01 11 43876369 43876369 C T HSD17B12 Silent p.V263V 0.05 TCGA-AA-3713-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.27 TCGA-AA-3713-01 11 45265561 45265561 C T SYT13 3'UTR 0.17 TCGA-AA-3713-01 11 45892056 45892056 C T CRY2 Nonsense_Mutation p.Q529* 0.18 TCGA-AA-3713-01 11 4615722 4615722 G A OR52I1 Missense_Mutation p.V152I 0.26 tolerated(1) benign(0.001) TCGA-AA-3713-01 11 46407883 46407883 C T CHRM4 Silent p.A75A 0.25 TCGA-AA-3713-01 11 46702231 46702231 C G ARHGAP1 Silent p.R234R 0.29 TCGA-AA-3713-01 11 47264653 47264653 A - ACP2 Frame_Shift_Del p.L293Rfs*89 0.22 TCGA-AA-3713-01 11 47296579 47296579 C T MADD Silent p.S176S 0.33 TCGA-AA-3713-01 11 47446168 47446168 G A PSMC3 Missense_Mutation p.S127F 0.25 deleterious(0) probably_damaging(0.937) TCGA-AA-3713-01 11 47744578 47744579 - TGG FNBP4 In_Frame_Ins p.P918dup 0.24 TCGA-AA-3713-01 11 47754123 47754123 C T FNBP4 Missense_Mutation p.A596T 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 11 4825418 4825418 A G OR52R1 Missense_Mutation p.F65L 0.29 deleterious(0.02) benign(0.071) TCGA-AA-3713-01 11 48267254 48267254 T C OR4X2 Missense_Mutation p.V200A 0.28 deleterious(0.02) benign(0.168) TCGA-AA-3713-01 11 498878 498878 C T RNH1 Missense_Mutation p.A224T 0.31 deleterious(0.05) probably_damaging(0.951) TCGA-AA-3713-01 11 55135721 55135721 C T OR4A15 Missense_Mutation p.S121F 0.25 deleterious_low_confidence(0.01) benign(0.203) TCGA-AA-3713-01 11 551905 551905 G A LRRC56 Missense_Mutation p.A326T 0.19 tolerated(0.16) benign(0.09) TCGA-AA-3713-01 11 55322732 55322732 C A OR4C15 Missense_Mutation p.A317D 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.837) TCGA-AA-3713-01 11 55761878 55761880 GTT - OR5F1 In_Frame_Del p.T76del 0.23 TCGA-AA-3713-01 11 57317574 57317576 AAG - SMTNL1 In_Frame_Del p.K512del 0.15 TCGA-AA-3713-01 11 57440510 57440510 G A ZDHHC5 5'UTR 0.29 TCGA-AA-3713-01 11 57563943 57563943 G A CTNND1 Silent p.V145V 0.30 TCGA-AA-3713-01 11 57577664 57577664 A - CTNND1 Frame_Shift_Del p.E842Kfs*10 0.22 TCGA-AA-3713-01 11 58892411 58892411 A - FAM111B Frame_Shift_Del p.I283Lfs*16 0.16 TCGA-AA-3713-01 11 58949629 58949629 G T DTX4 Missense_Mutation p.G210V 0.32 deleterious(0.02) benign(0.002) TCGA-AA-3713-01 11 60711202 60711202 C T SLC15A3 Missense_Mutation p.V319I 0.23 deleterious(0.02) benign(0.063) TCGA-AA-3713-01 11 61563440 61563440 C T FEN1 Missense_Mutation p.P203S 0.26 deleterious(0) benign(0.105) TCGA-AA-3713-01 11 62287414 62287414 G A AHNAK Silent p.I4825I 0.32 TCGA-AA-3713-01 11 62289965 62289965 A G AHNAK Missense_Mutation p.V3975A 0.27 possibly_damaging(0.686) TCGA-AA-3713-01 11 62365995 62365995 G A MTA2 Missense_Mutation p.R103W 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 11 6238951 6238951 C - FAM160A2 Frame_Shift_Del p.G636Vfs*40 0.23 TCGA-AA-3713-01 11 62458772 62458772 G A BSCL2 Nonsense_Mutation p.R329* 0.28 TCGA-AA-3713-01 11 6261341 6261341 C T CNGA4 Missense_Mutation p.S106L 0.18 tolerated(0.3) benign(0.052) TCGA-AA-3713-01 11 6261462 6261462 C T CNGA4 Silent p.R146R 0.19 TCGA-AA-3713-01 11 6281198 6281198 G A CCKBR Missense_Mutation p.G14R 0.29 deleterious_low_confidence(0.01) benign(0.347) TCGA-AA-3713-01 11 6341724 6341724 C T PRKCDBP 5'UTR 0.25 TCGA-AA-3713-01 11 64026369 64026369 G T PLCB3 Missense_Mutation p.Q422H 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 11 64397946 64397946 G A NRXN2 Missense_Mutation p.R1229C 0.29 deleterious(0) probably_damaging(0.997) TCGA-AA-3713-01 11 64627587 64627587 T C EHD1 Missense_Mutation p.K242E 0.27 deleterious(0) probably_damaging(0.928) TCGA-AA-3713-01 11 65360924 65360924 C T KCNK7 Intron 0.26 TCGA-AA-3713-01 11 6569159 6569159 G A DNHD1 Missense_Mutation p.R2265Q 0.40 benign(0.001) TCGA-AA-3713-01 11 65793818 65793818 C A CATSPER1 Missense_Mutation p.Q11H 0.22 tolerated(0.14) possibly_damaging(0.867) TCGA-AA-3713-01 11 6592514 6592514 G T DNHD1 Missense_Mutation p.R4591L 0.32 probably_damaging(0.997) TCGA-AA-3713-01 11 66249769 66249769 A G DPP3 Missense_Mutation p.Y33C 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 11 66411372 66411372 T A RBM14-RBM4 Silent p.A263A 0.27 TCGA-AA-3713-01 11 67018060 67018060 G - KDM2A Frame_Shift_Del p.G855Efs*24 0.32 TCGA-AA-3713-01 11 67173158 67173158 G A TBC1D10C Silent p.S151S 0.31 TCGA-AA-3713-01 11 67203565 67203565 G - PTPRCAP Frame_Shift_Del p.P87Qfs*91 0.27 TCGA-AA-3713-01 11 67219585 67219585 G T GPR152 Missense_Mutation p.P204H 0.28 deleterious(0) probably_damaging(0.992) TCGA-AA-3713-01 11 67287274 67287274 G A CABP2 Silent p.V209V 0.27 TCGA-AA-3713-01 11 70028643 70028643 G A ANO1 Silent p.P813P 0.29 TCGA-AA-3713-01 11 71850473 71850473 G A FOLR3 Missense_Mutation p.R189H 0.31 deleterious(0.03) benign(0.273) TCGA-AA-3713-01 11 72945967 72945967 G A P2RY2 Missense_Mutation p.A255T 0.27 tolerated(0.16) benign(0.048) TCGA-AA-3713-01 11 73073732 73073732 C T ARHGEF17 Missense_Mutation p.T1650M 0.15 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 11 73418520 73418520 T G RAB6A Missense_Mutation p.E147A 0.21 deleterious(0.02) benign(0.064) TCGA-AA-3713-01 11 73677268 73677268 G A DNAJB13 Missense_Mutation p.R193H 0.28 deleterious(0) possibly_damaging(0.879) TCGA-AA-3713-01 11 73716851 73716851 G A UCP3 Silent p.S155S 0.26 TCGA-AA-3713-01 11 75298108 75298108 G T MAP6 Missense_Mutation p.P813H 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3713-01 11 76709844 76709844 G T ACER3 Missense_Mutation p.R159L 0.29 tolerated(0.21) benign(0.153) TCGA-AA-3713-01 11 77832193 77832193 T - ALG8 Frame_Shift_Del p.V133Wfs*24 0.26 TCGA-AA-3713-01 11 82443570 82443571 - G FAM181B Frame_Shift_Ins p.R401Pfs*36 0.20 TCGA-AA-3713-01 11 85397165 85397165 C T CCDC89 Silent p.A3A 0.29 TCGA-AA-3713-01 11 862599 862599 A G TSPAN4 Missense_Mutation p.Q38R 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 11 87013478 87013478 A G TMEM135 Missense_Mutation p.D231G 0.21 deleterious(0.04) benign(0.016) TCGA-AA-3713-01 11 88911351 88911351 G A TYR Missense_Mutation p.R77Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 11 92086051 92086051 G A FAT3 Missense_Mutation p.R258H 0.22 probably_damaging(0.999) TCGA-AA-3713-01 11 92086871 92086871 T C FAT3 Silent p.T531T 0.27 TCGA-AA-3713-01 11 92523321 92523321 C T FAT3 Silent p.G1516G 0.25 TCGA-AA-3713-01 11 93494833 93494833 G A C11orf54 Silent p.T259T 0.26 TCGA-AA-3713-01 11 93545325 93545325 A C MED17 3'UTR 0.34 TCGA-AA-3713-01 11 95520789 95520789 G A FAM76B Missense_Mutation p.T69M 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3713-01 11 985555 985555 C T AP2A2 Missense_Mutation p.A312V 0.22 deleterious(0) possibly_damaging(0.691) TCGA-AA-3713-01 12 100169338 100169338 G A ANKS1B Nonsense_Mutation p.Q317* 0.24 TCGA-AA-3713-01 12 100594632 100594632 G A ACTR6 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-AA-3713-01 12 104081963 104081963 C T STAB2 Silent p.S1005S 0.22 TCGA-AA-3713-01 12 107713157 107713157 C T BTBD11 Missense_Mutation p.A147V 0.29 tolerated(0.11) unknown(0) TCGA-AA-3713-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.10 TCGA-AA-3713-01 12 108910879 108910879 C A FICD Missense_Mutation p.L44M 0.20 tolerated_low_confidence(0.13) possibly_damaging(0.653) TCGA-AA-3713-01 12 108917227 108917227 G A SART3 3'UTR 0.33 TCGA-AA-3713-01 12 108920137 108920137 G A SART3 Silent p.S703S 0.21 TCGA-AA-3713-01 12 10959246 10959246 C T TAS2R8 Missense_Mutation p.A112T 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 12 111352092 111352092 G T MYL2 Silent p.R58R 0.18 TCGA-AA-3713-01 12 113599797 113599797 C - DDX54 Frame_Shift_Del p.R734Lfs*98 0.22 TCGA-AA-3713-01 12 11506025 11506025 A T PRB1 3'UTR 0.14 TCGA-AA-3713-01 12 117749330 117749330 G T NOS1 Missense_Mutation p.L265I 0.08 tolerated_low_confidence(0.06) benign(0.076) TCGA-AA-3713-01 12 119583425 119583425 C T SRRM4 Silent p.S337S 0.26 TCGA-AA-3713-01 12 121932353 121932353 C T KDM2B Intron 0.23 TCGA-AA-3713-01 12 123344014 123344014 G - HIP1R Frame_Shift_Del p.A781Pfs*24 0.16 TCGA-AA-3713-01 12 123463779 123463779 C T OGFOD2 Silent p.R253R 0.26 TCGA-AA-3713-01 12 123488946 123488946 G A PITPNM2 Missense_Mutation p.A348V 0.11 deleterious(0) probably_damaging(0.994) TCGA-AA-3713-01 12 123806265 123806265 G A SBNO1 Nonsense_Mutation p.R714* 0.29 TCGA-AA-3713-01 12 126138174 126138174 G A TMEM132B Missense_Mutation p.D719N 0.27 tolerated(0.12) possibly_damaging(0.903) TCGA-AA-3713-01 12 12814973 12814973 G A GPR19 Missense_Mutation p.T137M 0.29 tolerated(1) benign(0.003) TCGA-AA-3713-01 12 132475981 132475981 G A EP400 Missense_Mutation p.A887T 0.25 unknown(0) TCGA-AA-3713-01 12 132625396 132625396 C T DDX51 Missense_Mutation p.A474T 0.27 tolerated(1) benign(0.002) TCGA-AA-3713-01 12 133158761 133158761 C - FBRSL1 Frame_Shift_Del p.P748Rfs*14 0.32 TCGA-AA-3713-01 12 133733527 133733527 A G ZNF10 Silent p.T565T 0.08 TCGA-AA-3713-01 12 14781651 14781652 - T GUCY2C Frame_Shift_Ins p.N726Kfs*17 0.14 TCGA-AA-3713-01 12 14949872 14949872 G A WBP11 Missense_Mutation p.R86C 0.30 tolerated(0.07) unknown(0) TCGA-AA-3713-01 12 1963192 1963192 C A CACNA2D4 Missense_Mutation p.R724L 0.25 tolerated(0.19) benign(0.013) TCGA-AA-3713-01 12 2968210 2968210 G - FOXM1 Frame_Shift_Del p.P667Qfs*4 0.24 TCGA-AA-3713-01 12 31116914 31116914 G A TSPAN11 Missense_Mutation p.G80S 0.26 tolerated(0.18) benign(0.02) TCGA-AA-3713-01 12 31648800 31648800 C T DENND5B Missense_Mutation p.A61T 0.21 deleterious(0) probably_damaging(0.971) TCGA-AA-3713-01 12 31850692 31850692 G A AMN1 Silent p.V172V 0.28 TCGA-AA-3713-01 12 319120 319120 C T SLC6A12 Silent p.G11G 0.10 TCGA-AA-3713-01 12 33535288 33535288 C T SYT10 Missense_Mutation p.D456N 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-3713-01 12 4479531 4479531 C T FGF23 Missense_Mutation p.R245H 0.29 tolerated_low_confidence(0.05) benign(0.002) TCGA-AA-3713-01 12 4479578 4479579 - C FGF23 Frame_Shift_Ins p.G230Rfs*32 0.23 TCGA-AA-3713-01 12 46287294 46287294 G T ARID2 Nonsense_Mutation p.G1747* 0.31 TCGA-AA-3713-01 12 4766923 4766923 G A NDUFA9 Missense_Mutation p.A110T 0.27 tolerated(0.37) benign(0.244) TCGA-AA-3713-01 12 4835974 4835974 T C GALNT8 Missense_Mutation p.I163T 0.22 deleterious(0) possibly_damaging(0.632) TCGA-AA-3713-01 12 49217484 49217484 G A CACNB3 Silent p.A63A 0.24 TCGA-AA-3713-01 12 49224117 49224117 G T DDX23 3'UTR 0.15 TCGA-AA-3713-01 12 49942833 49942833 C T KCNH3 Missense_Mutation p.R449C 0.35 deleterious(0) probably_damaging(0.978) TCGA-AA-3713-01 12 50294913 50294913 T A FAIM2 Missense_Mutation p.S71C 0.21 deleterious(0.05) benign(0.285) TCGA-AA-3713-01 12 50369473 50369473 G A AQP6 3'UTR 0.32 TCGA-AA-3713-01 12 51457975 51457975 C T CSRNP2 Missense_Mutation p.E396K 0.25 deleterious_low_confidence(0.01) benign(0.304) TCGA-AA-3713-01 12 5153834 5153834 G A KCNA5 Missense_Mutation p.G174D 0.28 deleterious(0) probably_damaging(0.936) TCGA-AA-3713-01 12 51751178 51751178 C - GALNT6 Frame_Shift_Del p.K520Sfs*79 0.30 TCGA-AA-3713-01 12 52822249 52822250 - A KRT75 Frame_Shift_Ins p.L391Ffs*7 0.18 TCGA-AA-3713-01 12 52981590 52981590 C T KRT72 Missense_Mutation p.D379N 0.32 tolerated(0.06) benign(0.254) TCGA-AA-3713-01 12 53566323 53566323 C T CSAD Missense_Mutation p.R106H 0.23 tolerated(0.06) benign(0.004) TCGA-AA-3713-01 12 53609518 53609518 G A RARG Missense_Mutation p.P82L 0.17 deleterious(0.02) possibly_damaging(0.734) TCGA-AA-3713-01 12 54769670 54769670 G A ZNF385A Silent p.P72P 0.28 TCGA-AA-3713-01 12 56091314 56091314 G T ITGA7 Missense_Mutation p.H480N 0.41 tolerated(0.78) benign(0.019) TCGA-AA-3713-01 12 56151339 56151339 T C SARNP Splice_Site p.X198_splice 0.09 TCGA-AA-3713-01 12 56221531 56221531 G A DNAJC14 Silent p.V304V 0.31 TCGA-AA-3713-01 12 56347627 56347627 A G DGKA 3'UTR 0.09 TCGA-AA-3713-01 12 56490962 56490962 G - ERBB3 Frame_Shift_Del p.A805Hfs*95 0.27 TCGA-AA-3713-01 12 57007874 57007883 AACGATTCCA - BAZ2A Frame_Shift_Del p.V259Dfs*14 0.16 TCGA-AA-3713-01 12 57112868 57112868 C A NACA Intron 0.23 TCGA-AA-3713-01 12 58135849 58135849 A G AGAP2 5'Flank 0.36 TCGA-AA-3713-01 12 62783576 62783576 G T USP15 Splice_Site p.X551_splice 0.25 TCGA-AA-3713-01 12 63541266 63541268 TCT - AVPR1A In_Frame_Del p.E376del 0.24 TCGA-AA-3713-01 12 6710555 6710555 C T CHD4 Silent p.A233A 0.24 TCGA-AA-3713-01 12 6781653 6781653 G A ZNF384 Silent p.C319C 0.29 TCGA-AA-3713-01 12 68054889 68054889 T C DYRK2 3'UTR 0.24 TCGA-AA-3713-01 12 69082788 69082788 G A NUP107 Missense_Mutation p.V19M 0.26 tolerated_low_confidence(0.18) benign(0.142) TCGA-AA-3713-01 12 6965602 6965602 G A USP5 Missense_Mutation p.R191Q 0.25 deleterious(0.01) benign(0.341) TCGA-AA-3713-01 12 70965746 70965747 - T PTPRB Frame_Shift_Ins p.N988Kfs*7 0.19 TCGA-AA-3713-01 12 7177485 7177485 G A C1S Missense_Mutation p.V533M 0.29 deleterious(0) probably_damaging(0.961) TCGA-AA-3713-01 12 7310181 7310181 G A CLSTN3 Missense_Mutation p.R875H 0.28 tolerated(0.11) benign(0.01) TCGA-AA-3713-01 12 80717584 80717584 G A OTOGL Missense_Mutation p.S1379N 0.24 tolerated(0.15) possibly_damaging(0.517) TCGA-AA-3713-01 12 81064218 81064218 G A PTPRQ Silent p.K2179K 0.27 TCGA-AA-3713-01 12 9083482 9083482 G A PHC1 Missense_Mutation p.R355Q 0.38 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-AA-3713-01 12 93169857 93169857 T - EEA1 Frame_Shift_Del p.N1389Mfs*3 0.28 TCGA-AA-3713-01 12 93969086 93969086 T C SOCS2 3'UTR 0.30 TCGA-AA-3713-01 12 94543809 94543809 C T PLXNC1 Silent p.C354C 0.17 TCGA-AA-3713-01 12 95912009 95912009 A G USP44 Missense_Mutation p.L687P 0.23 deleterious(0.02) benign(0.006) TCGA-AA-3713-01 12 95927023 95927026 CATT - USP44 Frame_Shift_Del p.E336Vfs*20 0.20 TCGA-AA-3713-01 12 96640956 96640956 A T ELK3 Missense_Mutation p.N149I 0.29 deleterious(0) possibly_damaging(0.854) TCGA-AA-3713-01 12 98848828 98848828 C T SLC9A7P1 RNA 0.13 TCGA-AA-3713-01 12 99100282 99100282 G A APAF1 Missense_Mutation p.R872H 0.29 tolerated(0.54) benign(0.04) TCGA-AA-3713-01 12 99139508 99139508 C T ANKS1B Intron 0.30 TCGA-AA-3713-01 13 111290685 111290685 G A CARKD Silent p.T330T 0.30 TCGA-AA-3713-01 13 111290842 111290842 G - CARKD Frame_Shift_Del p.G384Afs*10 0.27 TCGA-AA-3713-01 13 19997163 19997163 G T TPTE2 3'UTR 0.24 TCGA-AA-3713-01 13 20056687 20056687 A T TPTE2 Missense_Mutation p.S40R 0.10 tolerated_low_confidence(0.07) benign(0.002) TCGA-AA-3713-01 13 20221367 20221367 C T MPHOSPH8 Missense_Mutation p.T385M 0.24 tolerated_low_confidence(0.11) benign(0.033) TCGA-AA-3713-01 13 20279921 20279921 C T PSPC1 Missense_Mutation p.G423S 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3713-01 13 22141023 22141023 T C MICU2 Missense_Mutation p.M91V 0.20 tolerated(0.12) benign(0.103) TCGA-AA-3713-01 13 28537278 28537278 C - CDX2 Frame_Shift_Del p.V306Cfs*2 0.24 TCGA-AA-3713-01 13 29855838 29855838 C T MTUS2 Intron 0.19 TCGA-AA-3713-01 13 32885866 32885866 G A ZAR1L Missense_Mutation p.A66V 0.09 deleterious(0.02) benign(0.166) TCGA-AA-3713-01 13 38320346 38320346 T C TRPC4 Missense_Mutation p.I209V 0.28 deleterious(0.03) benign(0.254) TCGA-AA-3713-01 13 39618313 39618313 G A NHLRC3 Missense_Mutation p.G225S 0.31 deleterious(0.01) possibly_damaging(0.741) TCGA-AA-3713-01 13 46287441 46287441 G A SPERT Missense_Mutation p.R94H 0.26 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-AA-3713-01 13 46541877 46541878 TC - ZC3H13 Frame_Shift_Del p.R1361Tfs*4 0.26 TCGA-AA-3713-01 13 46716466 46716466 C T LCP1 Missense_Mutation p.R488H 0.25 tolerated(0.16) benign(0.008) TCGA-AA-3713-01 13 52343400 52343400 C T DHRS12 Missense_Mutation p.A246T 0.42 tolerated(0.49) benign(0.115) TCGA-AA-3713-01 13 77720341 77720341 A T MYCBP2 Missense_Mutation p.N2343K 0.30 possibly_damaging(0.852) TCGA-AA-3713-01 13 77834649 77834649 G A MYCBP2 Missense_Mutation p.A606V 0.26 probably_damaging(0.986) TCGA-AA-3713-01 13 77870783 77870783 T C MYCBP2 Missense_Mutation p.K72R 0.13 probably_damaging(0.952) TCGA-AA-3713-01 13 96622469 96622469 C T UGGT2 Missense_Mutation p.R411H 0.23 tolerated(1) benign(0.001) TCGA-AA-3713-01 13 98637822 98637822 A G IPO5 Missense_Mutation p.K125E 0.28 deleterious(0.02) probably_damaging(0.911) TCGA-AA-3713-01 14 103429466 103429466 T - CDC42BPB Frame_Shift_Del p.N918Tfs*5 0.20 TCGA-AA-3713-01 14 105211197 105211197 A T ADSSL1 Missense_Mutation p.K417N 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 14 105684116 105684116 G A BRF1 Missense_Mutation p.R513W 0.26 deleterious(0) probably_damaging(0.965) TCGA-AA-3713-01 14 105962355 105962355 G A C14orf80 Intron 0.33 TCGA-AA-3713-01 14 106109651 106109651 G A IGHG2 Silent p.T290T 0.23 TCGA-AA-3713-01 14 21500090 21500090 A G TPPP2 Missense_Mutation p.T123A 0.28 tolerated(0.1) benign(0.054) TCGA-AA-3713-01 14 21956902 21956902 G - TOX4 Frame_Shift_Del p.G159Vfs*126 0.25 TCGA-AA-3713-01 14 21990827 21990828 - A SALL2 3'UTR 0.28 TCGA-AA-3713-01 14 23072501 23072501 C T ABHD4 Nonsense_Mutation p.R107* 0.30 TCGA-AA-3713-01 14 24517985 24517985 G A LRRC16B 5'Flank 0.29 TCGA-AA-3713-01 14 24532580 24532580 C - LRRC16B Frame_Shift_Del p.P941Lfs*31 0.28 TCGA-AA-3713-01 14 24773441 24773442 TG - NOP9 Frame_Shift_Del p.V536Dfs*22 0.09 TCGA-AA-3713-01 14 24898055 24898055 G - CBLN3 Frame_Shift_Del p.P69Lfs*35 0.40 TCGA-AA-3713-01 14 30095692 30095692 C A PRKD1 Missense_Mutation p.G599V 0.26 deleterious(0) possibly_damaging(0.706) TCGA-AA-3713-01 14 31346934 31346934 G T COCH Missense_Mutation p.R80M 0.24 deleterious(0.02) possibly_damaging(0.905) TCGA-AA-3713-01 14 31762415 31762415 C A RP11-596D21.1 Intron 0.26 TCGA-AA-3713-01 14 35331346 35331346 G A BAZ1A Missense_Mutation p.S99L 0.32 deleterious(0.02) possibly_damaging(0.651) TCGA-AA-3713-01 14 36333150 36333150 G A BRMS1L Missense_Mutation p.V205I 0.26 tolerated(0.48) benign(0.008) TCGA-AA-3713-01 14 38061465 38061465 T C FOXA1 Missense_Mutation p.Y175C 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 14 39868656 39868656 A - FBXO33 3'UTR 0.44 TCGA-AA-3713-01 14 45433363 45433363 G T FAM179B Missense_Mutation p.R580M 0.28 deleterious(0) possibly_damaging(0.873) TCGA-AA-3713-01 14 47504475 47504476 - T MDGA2 Frame_Shift_Ins p.S520Ifs*22 0.21 TCGA-AA-3713-01 14 51290059 51290059 A - NIN Intron 0.14 TCGA-AA-3713-01 14 55513554 55513554 T - SOCS4 3'UTR 0.28 TCGA-AA-3713-01 14 58814450 58814451 - A ARID4A Frame_Shift_Ins p.D423Rfs*24 0.25 TCGA-AA-3713-01 14 59112029 59112029 G T DACT1 Missense_Mutation p.G230W 0.08 deleterious(0) possibly_damaging(0.823) TCGA-AA-3713-01 14 63447927 63447927 G A KCNH5 Missense_Mutation p.T202M 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3713-01 14 64518311 64518312 - A SYNE2 Frame_Shift_Ins p.F2563Ifs*28 0.22 TCGA-AA-3713-01 14 69695768 69695768 G A EXD2 Missense_Mutation p.R190Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 14 74825169 74825169 G A VRTN Silent p.P561P 0.25 TCGA-AA-3713-01 14 75230947 75230947 C - YLPM1 Frame_Shift_Del p.P254Lfs*35 0.27 TCGA-AA-3713-01 14 80677723 80677723 G T DIO2 Silent p.V31V 0.27 TCGA-AA-3713-01 14 90528867 90528867 C T KCNK13 Silent p.T106T 0.34 TCGA-AA-3713-01 14 90871130 90871130 A - CALM1 3'UTR 0.26 TCGA-AA-3713-01 14 91044554 91044554 G A TTC7B Missense_Mutation p.R736C 0.24 deleterious(0) probably_damaging(0.912) TCGA-AA-3713-01 14 92268639 92268639 C T TC2N Missense_Mutation p.R143H 0.09 deleterious(0) possibly_damaging(0.901) TCGA-AA-3713-01 14 92413599 92413599 C T FBLN5 5'UTR 0.32 TCGA-AA-3713-01 14 93649802 93649802 C T MOAP1 Silent p.E262E 0.28 TCGA-AA-3713-01 14 94053116 94053116 A T UNC79 Missense_Mutation p.K788M 0.27 deleterious(0) possibly_damaging(0.534) TCGA-AA-3713-01 14 94079308 94079308 C T UNC79 Missense_Mutation p.T1130M 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3713-01 14 94914535 94914535 C T SERPINA11 Missense_Mutation p.V193M 0.07 deleterious(0.03) possibly_damaging(0.71) TCGA-AA-3713-01 15 23258364 23258364 G A GOLGA8I Missense_Mutation p.V91I 0.56 tolerated(0.11) benign(0.063) TCGA-AA-3713-01 15 23811405 23811405 C - MKRN3 Frame_Shift_Del p.P161Rfs*10 0.29 TCGA-AA-3713-01 15 25925341 25925341 T C ATP10A Missense_Mutation p.M1265V 0.15 deleterious(0.03) benign(0) TCGA-AA-3713-01 15 27185151 27185151 C T GABRA5 Silent p.C268C 0.23 TCGA-AA-3713-01 15 28273046 28273046 C T OCA2 Silent p.P162P 0.26 TCGA-AA-3713-01 15 28460942 28460942 G T HERC2 Missense_Mutation p.P2012Q 0.27 benign(0.001) TCGA-AA-3713-01 15 31235169 31235169 A - MTMR10 Frame_Shift_Del p.F552Sfs*19 0.21 TCGA-AA-3713-01 15 31664347 31664347 C T KLF13 Missense_Mutation p.R238C 0.28 deleterious(0) possibly_damaging(0.689) TCGA-AA-3713-01 15 31819422 31819422 G A OTUD7A Missense_Mutation p.R248W 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 15 33359045 33359046 - AG FMN1 Frame_Shift_Ins p.L348Cfs*85 0.17 TCGA-AA-3713-01 15 33938602 33938602 G A RYR3 Silent p.T1272T 0.25 TCGA-AA-3713-01 15 37390413 37390413 G A MEIS2 Intron 0.33 TCGA-AA-3713-01 15 39546609 39546609 T C C15orf54 3'UTR 0.29 TCGA-AA-3713-01 15 42133104 42133104 G A PLA2G4B Splice_Site p.X348_splice 0.24 TCGA-AA-3713-01 15 42149132 42149132 C T SPTBN5 Silent p.V2909V 0.10 TCGA-AA-3713-01 15 42154350 42154350 A G SPTBN5 Missense_Mutation p.L2509S 0.30 probably_damaging(0.973) TCGA-AA-3713-01 15 43027843 43027843 A G CDAN1 Missense_Mutation p.C270R 0.33 tolerated(0.36) benign(0.143) TCGA-AA-3713-01 15 45556929 45556929 G A SLC28A2 Missense_Mutation p.G222E 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 15 50578203 50578203 A - GABPB1 Intron 0.25 TCGA-AA-3713-01 15 51799364 51799364 G A DMXL2 Missense_Mutation p.H911Y 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3713-01 15 56385566 56385566 G A RFX7 Missense_Mutation p.P1454S 0.23 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-AA-3713-01 15 57511733 57511733 A G TCF12 Intron 0.29 TCGA-AA-3713-01 15 58006972 58006972 A G POLR2M 3'UTR 0.08 TCGA-AA-3713-01 15 59180682 59180682 G A SLTM Silent p.S759S 0.27 TCGA-AA-3713-01 15 60297740 60297740 C T FOXB1 Missense_Mutation p.P193L 0.30 deleterious(0.05) benign(0.037) TCGA-AA-3713-01 15 62259644 62259644 A G VPS13C Missense_Mutation p.S972P 0.22 tolerated(0.06) benign(0.304) TCGA-AA-3713-01 15 64426935 64426935 G A SNX1 Missense_Mutation p.E432K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 15 65157294 65157294 G T PLEKHO2 Missense_Mutation p.G227V 0.13 tolerated(0.15) possibly_damaging(0.548) TCGA-AA-3713-01 15 65394960 65394960 G A UBAP1L Silent p.S61S 0.43 TCGA-AA-3713-01 15 68480286 68480286 T - PIAS1 3'UTR 0.17 TCGA-AA-3713-01 15 69329481 69329481 G T NOX5 Missense_Mutation p.K434N 0.24 deleterious(0) probably_damaging(0.964) TCGA-AA-3713-01 15 69737187 69737187 G A KIF23 Missense_Mutation p.R813H 0.36 tolerated(0.23) benign(0.008) TCGA-AA-3713-01 15 73552618 73552618 G A NEO1 Missense_Mutation p.R737H 0.27 deleterious(0.01) possibly_damaging(0.829) TCGA-AA-3713-01 15 74428424 74428424 G T ISLR2 3'UTR 0.30 TCGA-AA-3713-01 15 74914530 74914530 C T CLK3 Missense_Mutation p.R295W 0.23 deleterious(0.01) benign(0.03) TCGA-AA-3713-01 15 74922235 74922235 C T CLK3 3'UTR 0.24 TCGA-AA-3713-01 15 75631329 75631329 C T COMMD4 Missense_Mutation p.S62L 0.25 tolerated(0.28) benign(0.012) TCGA-AA-3713-01 15 76031524 76031524 C T AC019294.1 3'UTR 0.49 TCGA-AA-3713-01 15 76075359 76075361 AGG - RN7SL319P 5'Flank 0.37 TCGA-AA-3713-01 15 76152223 76152223 G A UBE2Q2 Missense_Mutation p.R96H 0.23 tolerated(0.1) benign(0.034) TCGA-AA-3713-01 15 78633455 78633455 C T CRABP1 Silent p.D47D 0.33 TCGA-AA-3713-01 15 85165861 85165861 C T ZSCAN2 3'UTR 0.23 TCGA-AA-3713-01 15 86312482 86312482 C T KLHL25 Missense_Mutation p.S187N 0.20 tolerated(0.21) benign(0.003) TCGA-AA-3713-01 15 89151405 89151405 C T MIR1179 RNA 0.22 TCGA-AA-3713-01 15 89390632 89390632 C T ACAN Missense_Mutation p.R530W 0.28 deleterious(0) unknown(0) TCGA-AA-3713-01 15 90246476 90246476 T G WDR93 Intron 0.29 TCGA-AA-3713-01 15 90320301 90320301 G - MESP2 Frame_Shift_Del p.V240Sfs*241 0.25 TCGA-AA-3713-01 15 90794006 90794006 A - TTLL13 Frame_Shift_Del p.N50Mfs*17 0.24 TCGA-AA-3713-01 15 91573926 91573926 C T AC068831.10 Intron 0.11 TCGA-AA-3713-01 15 93496702 93496702 G A CHD2 Missense_Mutation p.V540I 0.17 deleterious(0.03) probably_damaging(0.923) TCGA-AA-3713-01 15 99454592 99454592 G A IGF1R Missense_Mutation p.R504H 0.35 tolerated(0.07) benign(0.015) TCGA-AA-3713-01 16 10626907 10626907 C T EMP2 Missense_Mutation p.R120H 0.28 tolerated(0.34) benign(0.024) TCGA-AA-3713-01 16 10631925 10631925 G T EMP2 Missense_Mutation p.S59Y 0.15 deleterious(0.04) possibly_damaging(0.83) TCGA-AA-3713-01 16 10788487 10788487 G A TEKT5 Missense_Mutation p.R82C 0.13 deleterious(0) benign(0.158) TCGA-AA-3713-01 16 11118702 11118702 C T CLEC16A Silent p.H487H 0.29 TCGA-AA-3713-01 16 11369712 11369712 C T PRM2 3'UTR 0.23 TCGA-AA-3713-01 16 12897590 12897590 C - CPPED1 Frame_Shift_Del p.G15Afs*31 0.23 TCGA-AA-3713-01 16 1536186 1536186 G - PTX4 Frame_Shift_Del p.G393Efs*57 0.31 TCGA-AA-3713-01 16 15729530 15729530 C T KIAA0430 Missense_Mutation p.E272K 0.29 tolerated_low_confidence(0.1) benign(0.3) TCGA-AA-3713-01 16 16418884 16418884 G T PKD1P1 Splice_Site 0.12 TCGA-AA-3713-01 16 1840642 1840642 C T IGFALS Missense_Mutation p.D631N 0.28 deleterious(0) probably_damaging(0.988) TCGA-AA-3713-01 16 19070837 19070837 A G TMC7 Intron 0.17 TCGA-AA-3713-01 16 20451842 20451842 G A ACSM5 3'UTR 0.27 TCGA-AA-3713-01 16 20974745 20974745 C T DNAH3 Silent p.A3487A 0.25 TCGA-AA-3713-01 16 21716513 21716513 A G OTOA Missense_Mutation p.Y335C 0.25 deleterious(0) probably_damaging(0.959) TCGA-AA-3713-01 16 21730754 21730754 A G OTOA Missense_Mutation p.M579V 0.28 tolerated(0.08) possibly_damaging(0.511) TCGA-AA-3713-01 16 23676951 23676951 G A DCTN5 Missense_Mutation p.R118H 0.25 deleterious(0) probably_damaging(0.993) TCGA-AA-3713-01 16 24581366 24581366 A G RBBP6 Missense_Mutation p.K1119E 0.11 deleterious_low_confidence(0) unknown(0) TCGA-AA-3713-01 16 24942180 24942180 G - ARHGAP17 Frame_Shift_Del p.Q814Nfs*23 0.23 TCGA-AA-3713-01 16 27460061 27460061 G - IL21R Frame_Shift_Del p.G360Afs*20 0.23 TCGA-AA-3713-01 16 27509054 27509055 GA - GTF3C1 Frame_Shift_Del p.Q752Afs*6 0.21 TCGA-AA-3713-01 16 28112970 28112970 C T XPO6 Missense_Mutation p.V1029M 0.11 deleterious(0) benign(0.176) TCGA-AA-3713-01 16 28506637 28506637 T C APOBR Missense_Mutation p.V92A 0.26 tolerated(0.08) benign(0.002) TCGA-AA-3713-01 16 28995126 28995126 G A SPNS1 Missense_Mutation p.R447Q 0.26 tolerated(0.65) benign(0.007) TCGA-AA-3713-01 16 29708739 29708739 A C QPRT 3'UTR 0.36 TCGA-AA-3713-01 16 29974450 29974450 C - TMEM219 5'UTR 0.35 TCGA-AA-3713-01 16 29998923 29998923 T C TAOK2 Silent p.G1110G 0.28 TCGA-AA-3713-01 16 30021353 30021353 G - DOC2A Frame_Shift_Del p.P64Lfs*27 0.24 TCGA-AA-3713-01 16 30369510 30369510 G T TBC1D10B Silent p.R728R 0.27 TCGA-AA-3713-01 16 30409411 30409411 C T ZNF48 Silent p.C280C 0.30 TCGA-AA-3713-01 16 30581681 30581681 C A ZNF688 Missense_Mutation p.K129N 0.29 tolerated(0.46) benign(0.001) TCGA-AA-3713-01 16 30991479 30991479 G T SETD1A Missense_Mutation p.D1458Y 0.27 unknown(0) TCGA-AA-3713-01 16 31089503 31089503 C T ZNF646 Nonsense_Mutation p.R620* 0.34 TCGA-AA-3713-01 16 31422111 31422111 C - ITGAD Frame_Shift_Del p.R425Afs*50 0.21 TCGA-AA-3713-01 16 31448254 31448254 G A ZNF843 5'UTR 0.15 TCGA-AA-3713-01 16 4039076 4039076 A - ADCY9 Frame_Shift_Del p.F743Lfs*10 0.19 TCGA-AA-3713-01 16 4505602 4505602 G A DNAJA3 3'UTR 0.31 TCGA-AA-3713-01 16 4516347 4516347 G A NMRAL1 Silent p.S112S 0.25 TCGA-AA-3713-01 16 4557994 4557995 - G HMOX2 Frame_Shift_Ins p.Q165Pfs*26 0.24 TCGA-AA-3713-01 16 4802885 4802885 G - ZNF500 Frame_Shift_Del p.P312Hfs*29 0.21 TCGA-AA-3713-01 16 48180277 48180277 G T ABCC12 Missense_Mutation p.S20Y 0.33 deleterious(0) possibly_damaging(0.498) TCGA-AA-3713-01 16 49670784 49670784 C T ZNF423 Missense_Mutation p.R760H 0.23 deleterious(0) possibly_damaging(0.65) TCGA-AA-3713-01 16 49671973 49671973 C T ZNF423 Missense_Mutation p.V364M 0.28 tolerated(0.17) possibly_damaging(0.508) TCGA-AA-3713-01 16 50815180 50815180 G A CYLD Silent p.T514T 0.25 TCGA-AA-3713-01 16 55846865 55846865 G A CES1 Missense_Mutation p.P346S 0.19 deleterious(0.01) probably_damaging(1) TCGA-AA-3713-01 16 56920350 56920350 G A SLC12A3 Missense_Mutation p.R667Q 0.27 deleterious(0.03) benign(0.001) TCGA-AA-3713-01 16 57059895 57059895 G A NLRC5 Missense_Mutation p.R347H 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 16 57070018 57070018 A G NLRC5 Silent p.S878S 0.13 TCGA-AA-3713-01 16 57088996 57088996 G A NLRC5 Missense_Mutation p.V1217M 0.24 tolerated(0.12) benign(0.046) TCGA-AA-3713-01 16 57101298 57101298 G T NLRC5 Splice_Site p.X1441_splice 0.30 TCGA-AA-3713-01 16 58149340 58149340 G A C16orf80 Missense_Mutation p.R100C 0.29 deleterious(0) benign(0.15) TCGA-AA-3713-01 16 66436882 66436883 - C CDH5 Frame_Shift_Ins p.Y725Lfs*30 0.32 TCGA-AA-3713-01 16 67229829 67229829 G A E2F4 Missense_Mutation p.S318N 0.24 tolerated(0.53) benign(0.002) TCGA-AA-3713-01 16 67270623 67270623 C T FHOD1 Missense_Mutation p.A386T 0.32 tolerated(0.16) benign(0.035) TCGA-AA-3713-01 16 67877154 67877154 G - THAP11 Frame_Shift_Del p.E234Kfs*28 0.31 TCGA-AA-3713-01 16 67914732 67914732 C - EDC4 Frame_Shift_Del p.Q792Sfs*24 0.32 TCGA-AA-3713-01 16 69404382 69404382 G A TERF2 Intron 0.35 TCGA-AA-3713-01 16 70220507 70220507 G T CLEC18C 3'UTR 0.25 TCGA-AA-3713-01 16 70517772 70517772 A G COG4 Missense_Mutation p.F604S 0.17 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 16 70726860 70726860 G A VAC14 Silent p.L684L 0.24 TCGA-AA-3713-01 16 71884772 71884772 C T ATXN1L Nonsense_Mutation p.R377* 0.30 TCGA-AA-3713-01 16 72829895 72829895 G T ZFHX3 Missense_Mutation p.P2229H 0.20 probably_damaging(0.99) TCGA-AA-3713-01 16 74382822 74382823 - A RP11-252A24.2 RNA 0.21 TCGA-AA-3713-01 16 75665750 75665750 G A KARS Missense_Mutation p.L335F 0.29 deleterious(0) probably_damaging(0.984) TCGA-AA-3713-01 16 77240392 77240392 A G SYCE1L Missense_Mutation p.Q39R 0.23 deleterious(0.01) possibly_damaging(0.908) TCGA-AA-3713-01 16 77465419 77465419 C T ADAMTS18 Missense_Mutation p.A90T 0.28 tolerated(0.44) benign(0.008) TCGA-AA-3713-01 16 79633486 79633486 G A MAF Missense_Mutation p.A105V 0.27 tolerated(0.08) unknown(0) TCGA-AA-3713-01 16 86602393 86602393 G A FOXC2 Silent p.T484T 0.25 TCGA-AA-3713-01 16 88061163 88061163 C T BANP Missense_Mutation p.R316C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3713-01 16 88593300 88593300 G A ZFPM1 Missense_Mutation p.A161T 0.27 deleterious(0.03) possibly_damaging(0.642) TCGA-AA-3713-01 16 88873829 88873829 G A CDT1 Silent p.A472A 0.37 TCGA-AA-3713-01 16 89651907 89651907 C A CPNE7 Silent p.A284A 0.30 TCGA-AA-3713-01 16 89977603 89977603 C T TCF25 Missense_Mutation p.A663V 0.30 tolerated(0.28) benign(0.002) TCGA-AA-3713-01 16 90095646 90095646 C T C16orf3 Silent p.A35A 0.27 TCGA-AA-3713-01 17 10222353 10222353 C T MYH13 Silent p.Q1164Q 0.11 TCGA-AA-3713-01 17 10301936 10301936 C T MYH8 Missense_Mutation p.A1335T 0.30 deleterious(0.01) benign(0.04) TCGA-AA-3713-01 17 10355643 10355643 C T MYH4 Missense_Mutation p.R1118H 0.27 deleterious(0.04) probably_damaging(1) TCGA-AA-3713-01 17 12903543 12903543 C T ELAC2 Silent p.L451L 0.21 TCGA-AA-3713-01 17 15965440 15965440 G T NCOR1 Missense_Mutation p.P1789Q 0.22 possibly_damaging(0.828) TCGA-AA-3713-01 17 17039635 17039635 C G MPRIP Missense_Mutation p.L203V 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-AA-3713-01 17 17722407 17722407 C T SREBF1 Missense_Mutation p.A360T 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-AA-3713-01 17 18217976 18217977 CA - TOP3A Frame_Shift_Del p.V39Gfs*33 0.26 TCGA-AA-3713-01 17 18226071 18226071 G A SMCR8 Missense_Mutation p.R834H 0.31 tolerated(0.25) probably_damaging(0.999) TCGA-AA-3713-01 17 18855704 18855704 A G SLC5A10 Intron 0.22 TCGA-AA-3713-01 17 19459315 19459315 C T SLC47A1 Silent p.L287L 0.31 TCGA-AA-3713-01 17 19643657 19643657 C T ALDH3A1 Missense_Mutation p.R314H 0.24 tolerated(0.12) possibly_damaging(0.802) TCGA-AA-3713-01 17 21318788 21318788 G A KCNJ12 Missense_Mutation p.R45H 0.10 deleterious(0.03) benign(0.395) TCGA-AA-3713-01 17 21321201 21321201 T C KCNJ12 3'UTR 0.08 TCGA-AA-3713-01 17 26824124 26824124 C T SLC13A2 Missense_Mutation p.A588V 0.30 deleterious(0.01) benign(0.178) TCGA-AA-3713-01 17 28614958 28614958 C T BLMH Missense_Mutation p.R110H 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 17 28618472 28618473 - G BLMH Frame_Shift_Ins p.Q23Pfs*71 0.18 TCGA-AA-3713-01 17 29284969 29284969 A G ADAP2 3'UTR 0.26 TCGA-AA-3713-01 17 33460469 33460469 C T NLE1 Silent p.A421A 0.27 TCGA-AA-3713-01 17 34304463 34304463 G A CCL16 3'UTR 0.44 TCGA-AA-3713-01 17 34432035 34432035 T G CCL4 Missense_Mutation p.V64G 0.24 deleterious(0.03) benign(0.247) TCGA-AA-3713-01 17 3514001 3514001 A G SHPK Silent p.S430S 0.29 TCGA-AA-3713-01 17 3558526 3558526 G A CTNS Missense_Mutation p.R114H 0.26 tolerated(0.06) benign(0.019) TCGA-AA-3713-01 17 36872708 36872708 C T MLLT6 Silent p.P375P 0.33 TCGA-AA-3713-01 17 37667784 37667784 G A CDK12 Missense_Mutation p.R890H 0.19 probably_damaging(0.999) TCGA-AA-3713-01 17 38645191 38645191 C A TNS4 Missense_Mutation p.R157I 0.34 deleterious(0) possibly_damaging(0.828) TCGA-AA-3713-01 17 39323998 39323998 G - KRTAP4-3 Frame_Shift_Del p.Q143Sfs*55 0.25 TCGA-AA-3713-01 17 39503142 39503142 C T KRT33A Missense_Mutation p.R277H 0.30 deleterious(0.03) possibly_damaging(0.721) TCGA-AA-3713-01 17 39671868 39671868 A G KRT15 Missense_Mutation p.I368T 0.22 deleterious(0) probably_damaging(0.955) TCGA-AA-3713-01 17 3969758 3969758 A G ZZEF1 Missense_Mutation p.V1411A 0.16 tolerated(0.27) benign(0.004) TCGA-AA-3713-01 17 3974201 3974201 G A ZZEF1 Silent p.D1284D 0.26 TCGA-AA-3713-01 17 39883703 39883703 G A HAP1 Intron 0.29 TCGA-AA-3713-01 17 39925338 39925338 C T JUP Missense_Mutation p.S197N 0.37 tolerated(1) benign(0.001) TCGA-AA-3713-01 17 40004537 40004537 C T KLHL10 Missense_Mutation p.S602L 0.33 deleterious_low_confidence(0) benign(0.422) TCGA-AA-3713-01 17 40275057 40275057 C T HSPB9 Silent p.F63F 0.15 TCGA-AA-3713-01 17 40444024 40444024 G A STAT5A Missense_Mutation p.R107H 0.27 deleterious(0.03) probably_damaging(0.969) TCGA-AA-3713-01 17 40914796 40914797 - C RAMP2 Frame_Shift_Ins p.I154Hfs*16 0.24 TCGA-AA-3713-01 17 42030516 42030516 G A PYY Missense_Mutation p.T77M 0.14 deleterious(0.04) benign(0.004) TCGA-AA-3713-01 17 42030842 42030842 C T PYY Missense_Mutation p.V4M 0.28 tolerated(0.28) benign(0.31) TCGA-AA-3713-01 17 42249464 42249464 G A ASB16 Missense_Mutation p.A118T 0.36 tolerated(0.9) benign(0.078) TCGA-AA-3713-01 17 42340014 42340014 C A SLC4A1 Missense_Mutation p.E32D 0.27 tolerated(0.27) benign(0.004) TCGA-AA-3713-01 17 42483347 42483348 - T GPATCH8 Frame_Shift_Ins p.Q189Tfs*10 0.22 TCGA-AA-3713-01 17 43528096 43528096 C T PLEKHM1 Missense_Mutation p.R844Q 0.23 deleterious(0.02) possibly_damaging(0.644) TCGA-AA-3713-01 17 43585438 43585438 T - LRRC37A4P 3'Flank 0.23 TCGA-AA-3713-01 17 4433969 4433969 G - SPNS2 Frame_Shift_Del p.E207Rfs*46 0.26 TCGA-AA-3713-01 17 4444853 4444853 G A MYBBP1A Missense_Mutation p.R1068C 0.30 tolerated(0.12) benign(0.02) TCGA-AA-3713-01 17 45297300 45297300 G A MYL4 Missense_Mutation p.R65Q 0.09 tolerated(0.08) benign(0.349) TCGA-AA-3713-01 17 4535210 4535210 G A ALOX15 Nonsense_Mutation p.Q595* 0.24 TCGA-AA-3713-01 17 4576309 4576309 G T PELP1 Silent p.P659P 0.21 TCGA-AA-3713-01 17 4578652 4578652 C T PELP1 Silent p.L358L 0.24 TCGA-AA-3713-01 17 45925800 45925800 G A SP6 5'UTR 0.31 TCGA-AA-3713-01 17 4648567 4648567 G T ZMYND15 Missense_Mutation p.G660C 0.27 deleterious(0.03) possibly_damaging(0.775) TCGA-AA-3713-01 17 47115683 47115683 G A IGF2BP1 Silent p.A185A 0.29 TCGA-AA-3713-01 17 47903406 47903406 C T KAT7 Missense_Mutation p.R509C 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 17 4802994 4802994 C T C17orf107 5'UTR 0.26 TCGA-AA-3713-01 17 4803776 4803776 T C C17orf107 Missense_Mutation p.L174P 0.23 deleterious_low_confidence(0.04) benign(0.006) TCGA-AA-3713-01 17 48549888 48549888 G A ACSF2 Missense_Mutation p.E475K 0.30 deleterious(0) possibly_damaging(0.595) TCGA-AA-3713-01 17 48597017 48597017 G T MYCBPAP Missense_Mutation p.G305V 0.23 tolerated(0.21) benign(0.126) TCGA-AA-3713-01 17 48653007 48653007 G A CACNA1G Missense_Mutation p.R415Q 0.26 tolerated(0.07) benign(0.008) TCGA-AA-3713-01 17 4889516 4889516 A G CAMTA2 Missense_Mutation p.M24T 0.23 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-AA-3713-01 17 5461970 5461970 C T NLRP1 Silent p.G682G 0.20 TCGA-AA-3713-01 17 56289786 56289786 G A MKS1 Missense_Mutation p.R290W 0.18 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 17 58733983 58733984 - A PPM1D Frame_Shift_Ins p.M349Nfs*19 0.23 TCGA-AA-3713-01 17 6013000 6013000 A G WSCD1 Missense_Mutation p.D308G 0.30 tolerated(0.07) benign(0.008) TCGA-AA-3713-01 17 61901768 61901768 C T FTSJ3 Silent p.S307S 0.24 TCGA-AA-3713-01 17 62028844 62028844 G A SCN4A Silent p.S931S 0.21 TCGA-AA-3713-01 17 62781467 62781467 G T hsa-mir-6080 5'Flank 0.27 TCGA-AA-3713-01 17 6374591 6374591 G A PITPNM3 Missense_Mutation p.P505L 0.31 deleterious(0.03) benign(0.001) TCGA-AA-3713-01 17 65199518 65199518 C T HELZ Missense_Mutation p.A97T 0.24 deleterious_low_confidence(0) possibly_damaging(0.629) TCGA-AA-3713-01 17 65689042 65689044 TTG - PITPNC1 3'UTR 0.12 TCGA-AA-3713-01 17 70119913 70119914 - GT SOX9 Frame_Shift_Ins p.P307Cfs*77 0.22 TCGA-AA-3713-01 17 7122299 7122299 C T DLG4 5'UTR 0.22 TCGA-AA-3713-01 17 71250123 71250123 G A CPSF4L Missense_Mutation p.P117L 0.26 deleterious(0.01) benign(0.033) TCGA-AA-3713-01 17 7187328 7187328 G A SLC2A4 Missense_Mutation p.E162K 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 17 72285735 72285736 - C DNAI2 Frame_Shift_Ins p.Q159Pfs*52 0.23 TCGA-AA-3713-01 17 72860660 72860660 C T FDXR Silent p.P291P 0.18 TCGA-AA-3713-01 17 73124841 73124843 TCA - ARMC7 In_Frame_Del p.I104del 0.34 TCGA-AA-3713-01 17 73279535 73279535 C T SLC25A19 Missense_Mutation p.R143H 0.28 deleterious(0) probably_damaging(0.991) TCGA-AA-3713-01 17 7366996 7366996 C T ZBTB4 Silent p.P435P 0.28 TCGA-AA-3713-01 17 73753170 73753170 A G ITGB4 Missense_Mutation p.I1734V 0.18 deleterious(0) probably_damaging(0.982) TCGA-AA-3713-01 17 73838564 73838564 C T UNC13D Silent p.T173T 0.30 TCGA-AA-3713-01 17 73871484 73871484 T C TRIM47 Missense_Mutation p.K425E 0.30 deleterious(0.01) benign(0.05) TCGA-AA-3713-01 17 73895735 73895735 C T MRPL38 Missense_Mutation p.R244Q 0.29 tolerated(0.61) benign(0.003) TCGA-AA-3713-01 17 74017800 74017800 G A EVPL Silent p.G290G 0.36 TCGA-AA-3713-01 17 74730397 74730397 A - SRSF2 3'UTR 0.30 TCGA-AA-3713-01 17 7482921 7482922 AG - CD68 5'UTR 0.27 TCGA-AA-3713-01 17 76161940 76161940 C A C17orf99 Intron 0.33 TCGA-AA-3713-01 17 76425217 76425217 G - DNAH17 Frame_Shift_Del p.N4125Tfs*34 0.29 TCGA-AA-3713-01 17 76435292 76435292 T - DNAH17 Frame_Shift_Del p.K3881Nfs*2 0.21 TCGA-AA-3713-01 17 76455273 76455273 G A DNAH17 Missense_Mutation p.P3210L 0.26 benign(0.177) TCGA-AA-3713-01 17 76481761 76481761 T C DNAH17 Missense_Mutation p.M2438V 0.25 possibly_damaging(0.857) TCGA-AA-3713-01 17 76498709 76498709 G T DNAH17 Silent p.G1707G 0.27 TCGA-AA-3713-01 17 76570976 76570976 G A DNAH17 Missense_Mutation p.T55M 0.29 possibly_damaging(0.555) TCGA-AA-3713-01 17 7695596 7695596 C - DNAH2 Frame_Shift_Del p.I2363Yfs*40 0.25 TCGA-AA-3713-01 17 7752556 7752556 C T KDM6B Missense_Mutation p.R984W 0.30 probably_damaging(0.942) TCGA-AA-3713-01 17 77769887 77769887 C T CBX8 Missense_Mutation p.R72H 0.33 deleterious(0) probably_damaging(0.964) TCGA-AA-3713-01 17 7798702 7798703 - G CHD3 Frame_Shift_Ins p.E578Gfs*68 0.28 TCGA-AA-3713-01 17 7806657 7806657 C T CHD3 Missense_Mutation p.A1247V 0.20 possibly_damaging(0.499) TCGA-AA-3713-01 17 78355489 78355489 G A RNF213 Missense_Mutation p.R4647H 0.34 possibly_damaging(0.794) TCGA-AA-3713-01 17 7918019 7918019 G A GUCY2D Missense_Mutation p.R838H 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 17 79917423 79917423 G A NOTUM Silent p.N132N 0.34 TCGA-AA-3713-01 17 80011178 80011178 T G GPS1 Missense_Mutation p.V61G 0.27 tolerated(0.23) benign(0.003) TCGA-AA-3713-01 17 80049304 80049304 C T FASN Missense_Mutation p.R429H 0.17 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 17 80400298 80400298 G - HEXDC Frame_Shift_Del p.A532Lfs*41 0.25 TCGA-AA-3713-01 17 8808158 8808158 A G PIK3R5 Silent p.P116P 0.22 TCGA-AA-3713-01 18 19996883 19996883 T - CTAGE1 Frame_Shift_Del p.T298Pfs*2 0.21 TCGA-AA-3713-01 18 21113452 21113452 A - NPC1 Frame_Shift_Del p.F1207Lfs*35 0.22 TCGA-AA-3713-01 18 21141473 21141473 C T NPC1 Missense_Mutation p.R161Q 0.56 tolerated(0.21) benign(0.003) TCGA-AA-3713-01 18 24081087 24081087 C A KCTD1 Missense_Mutation p.G38V 0.54 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 18 24081088 24081088 C G KCTD1 Missense_Mutation p.G38R 0.53 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 18 2729369 2729369 A - SMCHD1 Frame_Shift_Del p.D1006Tfs*39 0.19 TCGA-AA-3713-01 18 2951225 2951225 C T LPIN2 Missense_Mutation p.V140I 0.04 tolerated(0.32) benign(0) TCGA-AA-3713-01 18 29867949 29867949 C T GAREM Missense_Mutation p.R204Q 0.54 deleterious(0) probably_damaging(0.978) TCGA-AA-3713-01 18 47918601 47918601 G A SKA1 Missense_Mutation p.R251H 0.06 deleterious(0.03) probably_damaging(1) TCGA-AA-3713-01 18 48256225 48256225 G T MAPK4 3'UTR 0.21 TCGA-AA-3713-01 18 5396207 5396207 G A EPB41L3 Missense_Mutation p.S989L 0.22 deleterious(0) probably_damaging(0.995) TCGA-AA-3713-01 18 5891645 5891645 C T TMEM200C Missense_Mutation p.A140T 0.21 tolerated(0.26) benign(0.011) TCGA-AA-3713-01 18 59483365 59483365 G A RNF152 Missense_Mutation p.A111V 0.20 tolerated(0.71) benign(0.01) TCGA-AA-3713-01 18 61645599 61645599 G - SERPINB8 Frame_Shift_Del p.E21Kfs*13 0.36 TCGA-AA-3713-01 18 66564655 66564655 A - CCDC102B Frame_Shift_Del p.N420Tfs*5 0.24 TCGA-AA-3713-01 18 74620474 74620474 G A ZNF236 Silent p.T830T 0.16 TCGA-AA-3713-01 18 8088780 8088780 C T PTPRM Missense_Mutation p.P596L 0.33 deleterious(0.04) benign(0.275) TCGA-AA-3713-01 18 8784095 8784095 G - SOGA2 Frame_Shift_Del p.G330Vfs*9 0.30 TCGA-AA-3713-01 18 8831645 8831645 G A SOGA2 3'UTR 0.25 TCGA-AA-3713-01 18 9221854 9221854 T G ANKRD12 Missense_Mutation p.V267G 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 18 9887726 9887726 A G TXNDC2 Missense_Mutation p.D417G 0.35 tolerated(1) benign(0.012) TCGA-AA-3713-01 19 10202224 10202224 C - C19orf66 Frame_Shift_Del p.P189Rfs*67 0.31 TCGA-AA-3713-01 19 10204186 10204186 C - ANGPTL6 Frame_Shift_Del p.G354Afs*115 0.27 TCGA-AA-3713-01 19 10230528 10230528 G A EIF3G Missense_Mutation p.T3I 0.33 deleterious(0.04) benign(0.016) TCGA-AA-3713-01 19 10252728 10252728 G A DNMT1 Silent p.G1095G 0.26 TCGA-AA-3713-01 19 1058713 1058713 T A ABCA7 Missense_Mutation p.L1749Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-3713-01 19 10655672 10655672 T G ATG4D Missense_Mutation p.L120R 0.23 deleterious(0) probably_damaging(0.981) TCGA-AA-3713-01 19 10662902 10662902 C T ATG4D Missense_Mutation p.R382C 0.25 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 19 11106969 11106969 C T SMARCA4 Silent p.D558D 0.19 TCGA-AA-3713-01 19 1110861 1110861 G A SBNO2 Missense_Mutation p.R971C 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 19 12461061 12461061 A G ZNF442 Silent p.S446S 0.27 TCGA-AA-3713-01 19 12903806 12903806 C - JUNB 3'UTR 0.24 TCGA-AA-3713-01 19 13397459 13397459 G - CACNA1A Frame_Shift_Del p.K1138Rfs*48 0.23 TCGA-AA-3713-01 19 16275687 16275687 C A CIB3 Silent p.L128L 0.25 TCGA-AA-3713-01 19 16535994 16535994 G - EPS15L1 Frame_Shift_Del p.P231Hfs*37 0.26 TCGA-AA-3713-01 19 16884019 16884019 C T NWD1 Silent p.C831C 0.30 TCGA-AA-3713-01 19 16908586 16908586 C G NWD1 Silent p.G1116G 0.24 TCGA-AA-3713-01 19 17001248 17001248 G T F2RL3 Missense_Mutation p.S325I 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-AA-3713-01 19 17664393 17664393 C A FAM129C 3'UTR 0.28 TCGA-AA-3713-01 19 1796767 1796767 G A ATP8B3 Missense_Mutation p.R566C 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 19 18260479 18260479 C T MAST3 Silent p.I1291I 0.17 TCGA-AA-3713-01 19 18650188 18650188 G - FKBP8 Frame_Shift_Del p.Q182Kfs*18 0.30 TCGA-AA-3713-01 19 18972934 18972934 G A UPF1 Missense_Mutation p.R858H 0.22 deleterious(0) probably_damaging(0.953) TCGA-AA-3713-01 19 19004377 19004377 G A CERS1 Missense_Mutation p.A86V 0.35 deleterious(0.01) possibly_damaging(0.631) TCGA-AA-3713-01 19 19021865 19021865 C T COPE Missense_Mutation p.V69I 0.25 deleterious(0.04) possibly_damaging(0.591) TCGA-AA-3713-01 19 19576246 19576246 T C GATAD2A Missense_Mutation p.M31T 0.30 deleterious(0.03) benign(0.011) TCGA-AA-3713-01 19 19740727 19740727 G A GMIP 3'UTR 0.19 TCGA-AA-3713-01 19 22018853 22018853 G - ZNF43 5'UTR 0.19 TCGA-AA-3713-01 19 22574113 22574113 G A ZNF98 3'UTR 0.08 TCGA-AA-3713-01 19 2344360 2344360 A T SPPL2B Intron 0.27 TCGA-AA-3713-01 19 33095201 33095201 G A ANKRD27 Missense_Mutation p.R875W 0.30 deleterious(0) benign(0.037) TCGA-AA-3713-01 19 34818947 34818947 C T KIAA0355 Missense_Mutation p.P332L 0.27 deleterious(0.01) benign(0.132) TCGA-AA-3713-01 19 35940714 35940715 - G FFAR2 Frame_Shift_Ins p.R35Afs*120 0.20 TCGA-AA-3713-01 19 36221648 36221648 C T KMT2B Missense_Mutation p.R1773C 0.12 probably_damaging(0.993) TCGA-AA-3713-01 19 36230417 36230417 C T IGFLR1 Missense_Mutation p.A278T 0.27 deleterious(0.04) possibly_damaging(0.636) TCGA-AA-3713-01 19 3661894 3661894 C T PIP5K1C Missense_Mutation p.V109M 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3713-01 19 38376035 38376035 T - WDR87 Frame_Shift_Del p.K2720Rfs*57 0.28 TCGA-AA-3713-01 19 38842958 38842958 G A CATSPERG Missense_Mutation p.A295T 0.27 deleterious(0.02) possibly_damaging(0.682) TCGA-AA-3713-01 19 38916750 38916750 G A RASGRP4 5'UTR 0.25 TCGA-AA-3713-01 19 39360002 39360002 T G RINL Missense_Mutation p.H508P 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-3713-01 19 39597644 39597644 C T PAPL Missense_Mutation p.R391C 0.28 deleterious(0) probably_damaging(0.996) TCGA-AA-3713-01 19 39860699 39860699 G A SAMD4B Missense_Mutation p.V201M 0.25 tolerated(0.26) benign(0.012) TCGA-AA-3713-01 19 40029888 40029888 T - EID2 3'UTR 0.43 TCGA-AA-3713-01 19 40366557 40366557 G A FCGBP Silent p.F4559F 0.24 TCGA-AA-3713-01 19 40383953 40383953 C T FCGBP Silent p.A3219A 0.12 TCGA-AA-3713-01 19 42383712 42383712 C T CD79A Silent p.L163L 0.23 TCGA-AA-3713-01 19 44079637 44079639 AGA - XRCC1 5'UTR 0.20 TCGA-AA-3713-01 19 44662111 44662111 G - ZNF234 Frame_Shift_Del p.E649Kfs*20 0.22 TCGA-AA-3713-01 19 4491824 4491824 A - HDGFRP2 Frame_Shift_Del p.K226Rfs*45 0.29 TCGA-AA-3713-01 19 45448447 45448447 T G APOC4 Missense_Mutation p.L90R 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 19 46352124 46352124 T C SYMPK Missense_Mutation p.I104V 0.26 tolerated(0.4) benign(0.009) TCGA-AA-3713-01 19 46498347 46498347 G A CCDC61 5'Flank 0.26 TCGA-AA-3713-01 19 47774752 47774752 C A CCDC9 Missense_Mutation p.F471L 0.32 tolerated(0.51) unknown(0) TCGA-AA-3713-01 19 4792955 4792955 G A FEM1A Silent p.L363L 0.23 TCGA-AA-3713-01 19 48949407 48949407 A G GRWD1 Missense_Mutation p.M49V 0.18 tolerated(0.57) benign(0.065) TCGA-AA-3713-01 19 49207113 49207113 C T FUT2 Silent p.G300G 0.24 TCGA-AA-3713-01 19 49519504 49519504 G A LHB Missense_Mutation p.R83C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3713-01 19 49692023 49692023 C T TRPM4 Silent p.G623G 0.27 TCGA-AA-3713-01 19 50363638 50363639 - G PTOV1 3'UTR 0.28 TCGA-AA-3713-01 19 50463631 50463631 C T SIGLEC11 Missense_Mutation p.G170R 0.21 deleterious(0) probably_damaging(0.993) TCGA-AA-3713-01 19 50794187 50794187 G A MYH14 Missense_Mutation p.R1670H 0.28 deleterious(0) probably_damaging(0.988) TCGA-AA-3713-01 19 50826904 50826904 C T KCNC3 Missense_Mutation p.V436M 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 19 50984166 50984166 C T EMC10 Missense_Mutation p.R204C 0.28 deleterious(0) probably_damaging(0.984) TCGA-AA-3713-01 19 51527504 51527504 C T KLK11 Missense_Mutation p.R119Q 0.29 tolerated(0.35) benign(0.132) TCGA-AA-3713-01 19 51837524 51837524 G A VSIG10L Silent p.I780I 0.25 TCGA-AA-3713-01 19 52249838 52249838 C T FPR1 Missense_Mutation p.R137H 0.25 tolerated(0.06) possibly_damaging(0.573) TCGA-AA-3713-01 19 5238982 5238982 C T PTPRS Silent p.P599P 0.52 TCGA-AA-3713-01 19 5244243 5244243 G - PTPRS Frame_Shift_Del p.S414Afs*30 0.29 TCGA-AA-3713-01 19 52826002 52826002 G A ZNF480 Missense_Mutation p.R500Q 0.30 tolerated(0.5) benign(0.049) TCGA-AA-3713-01 19 53015079 53015079 C A ZNF578 Missense_Mutation p.P482H 0.22 deleterious(0) probably_damaging(0.925) TCGA-AA-3713-01 19 53270577 53270577 C T ZNF600 Silent p.P144P 0.25 TCGA-AA-3713-01 19 53301685 53301685 T G ZNF28 3'UTR 0.09 TCGA-AA-3713-01 19 53473565 53473566 - T ZNF702P RNA 0.20 TCGA-AA-3713-01 19 53914013 53914013 A C ZNF765 3'UTR 0.35 TCGA-AA-3713-01 19 54214314 54214314 G A MIR524 RNA 0.30 TCGA-AA-3713-01 19 54238203 54238203 C T MIR518D RNA 0.18 TCGA-AA-3713-01 19 54696006 54696006 C - TSEN34 Frame_Shift_Del p.L178Cfs*214 0.28 TCGA-AA-3713-01 19 54849316 54849316 C T LILRA4 Missense_Mutation p.M182I 0.32 tolerated(0.13) benign(0.009) TCGA-AA-3713-01 19 54946788 54946788 T G TTYH1 Missense_Mutation p.F398V 0.20 deleterious(0) benign(0.189) TCGA-AA-3713-01 19 55048240 55048240 G A KIR3DX1 Silent p.G269G 0.25 TCGA-AA-3713-01 19 55107762 55107762 T - LILRA1 Frame_Shift_Del p.L357* 0.22 TCGA-AA-3713-01 19 55713538 55713538 C T PTPRH Missense_Mutation p.A347T 0.28 benign(0.023) TCGA-AA-3713-01 19 56466123 56466123 C T NLRP8 Silent p.Y233Y 0.28 TCGA-AA-3713-01 19 56701877 56701877 G T ZSCAN5B Missense_Mutation p.D269E 0.29 tolerated(0.06) possibly_damaging(0.64) TCGA-AA-3713-01 19 57326567 57326567 C T PEG3 Silent p.Q1081Q 0.25 TCGA-AA-3713-01 19 57840047 57840047 G A ZNF543 Missense_Mutation p.R406H 0.08 tolerated(1) benign(0.002) TCGA-AA-3713-01 19 58619371 58619371 C A ZSCAN18 Intron 0.25 TCGA-AA-3713-01 19 6418054 6418054 G A KHSRP Missense_Mutation p.R306C 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3713-01 19 7707395 7707395 G A STXBP2 Missense_Mutation p.R292H 0.18 deleterious(0.03) benign(0.126) TCGA-AA-3713-01 19 7987518 7987519 - C SNAPC2 Frame_Shift_Ins p.A295Sfs*68 0.37 TCGA-AA-3713-01 19 884936 884936 C - MED16 Frame_Shift_Del p.V318* 0.28 TCGA-AA-3713-01 19 9000468 9000468 T C MUC16 Missense_Mutation p.T13506A 0.30 possibly_damaging(0.763) TCGA-AA-3713-01 19 9046077 9046077 T G MUC16 Missense_Mutation p.T11852P 0.26 benign(0) TCGA-AA-3713-01 19 9077087 9077087 G T MUC16 Silent p.T3453T 0.07 TCGA-AA-3713-01 1 100212943 100212943 C T FRRS1 Silent p.A80A 0.20 TCGA-AA-3713-01 1 109242061 109242061 C T PRPF38B Nonsense_Mutation p.R354* 0.25 TCGA-AA-3713-01 1 109350120 109350120 C T STXBP3 Missense_Mutation p.R545C 0.23 deleterious(0) probably_damaging(0.976) TCGA-AA-3713-01 1 109466652 109466652 C T GPSM2 Missense_Mutation p.T544M 0.25 tolerated(0.1) probably_damaging(0.939) TCGA-AA-3713-01 1 109525946 109525946 C T WDR47 Missense_Mutation p.V693I 0.31 tolerated(0.42) possibly_damaging(0.703) TCGA-AA-3713-01 1 110033832 110033832 G A ATXN7L2 Silent p.P549P 0.32 TCGA-AA-3713-01 1 110086370 110086370 C T GPR61 Silent p.H242H 0.34 TCGA-AA-3713-01 1 110121959 110121959 A T GNAI3 Missense_Mutation p.Y146F 0.22 tolerated(0.25) possibly_damaging(0.719) TCGA-AA-3713-01 1 110596331 110596331 C A STRIP1 Missense_Mutation p.L771I 0.25 deleterious(0.05) probably_damaging(0.998) TCGA-AA-3713-01 1 110882873 110882873 C - RBM15 Frame_Shift_Del p.P284Lfs*98 0.26 TCGA-AA-3713-01 1 114443794 114443794 T C AP4B1 Intron 0.44 TCGA-AA-3713-01 1 115147562 115147562 G A DENND2C Missense_Mutation p.P550S 0.07 deleterious(0.02) probably_damaging(0.984) TCGA-AA-3713-01 1 115164525 115164526 - T DENND2C Frame_Shift_Ins p.N406Kfs*11 0.23 TCGA-AA-3713-01 1 115601583 115601583 G C TSPAN2 Missense_Mutation p.T122S 0.21 tolerated(0.69) benign(0.003) TCGA-AA-3713-01 1 11850731 11850731 G A MTHFR 3'UTR 0.25 TCGA-AA-3713-01 1 120295250 120295250 G A HMGCS2 Missense_Mutation p.R448C 0.29 deleterious(0.04) benign(0.251) TCGA-AA-3713-01 1 144863350 144863350 G A PDE4DIP Missense_Mutation p.A2018V 0.10 tolerated(0.07) benign(0.012) TCGA-AA-3713-01 1 145440976 145440977 AT - TXNIP Frame_Shift_Del p.M355Gfs*14 0.19 TCGA-AA-3713-01 1 147091501 147091501 C - BCL9 Frame_Shift_Del p.P516Lfs*5 0.36 TCGA-AA-3713-01 1 149905509 149905511 TCC - MTMR11 In_Frame_Del p.E284del 0.15 TCGA-AA-3713-01 1 150445387 150445387 G A RPRD2 Silent p.V1321V 0.32 TCGA-AA-3713-01 1 150940187 150940187 G T CERS2 Missense_Mutation p.P158T 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3713-01 1 151105052 151105052 C T SEMA6C Missense_Mutation p.D933N 0.28 tolerated_low_confidence(0.22) probably_damaging(0.932) TCGA-AA-3713-01 1 152188365 152188365 C T HRNR Missense_Mutation p.G1914R 0.10 unknown(0) TCGA-AA-3713-01 1 153643427 153643427 C T ILF2 5'UTR 0.24 TCGA-AA-3713-01 1 153659175 153659175 C - NPR1 Frame_Shift_Del p.N607Ifs*62 0.27 TCGA-AA-3713-01 1 153905716 153905716 C T DENND4B Missense_Mutation p.R1137H 0.27 tolerated(0.17) benign(0.002) TCGA-AA-3713-01 1 153916852 153916853 - C DENND4B 5'UTR 0.20 TCGA-AA-3713-01 1 154199808 154199808 T C UBAP2L Silent p.D47D 0.31 TCGA-AA-3713-01 1 154557259 154557259 A G ADAR 3'UTR 0.27 TCGA-AA-3713-01 1 154841791 154841791 G - KCNN3 Frame_Shift_Del p.P217Rfs*67 0.23 TCGA-AA-3713-01 1 155007017 155007018 - G DCST1 Frame_Shift_Ins p.L59Afs*121 0.24 TCGA-AA-3713-01 1 155141942 155141942 T C KRTCAP2 Missense_Mutation p.T155A 0.28 tolerated(0.26) benign(0.001) TCGA-AA-3713-01 1 155313501 155313501 G A ASH1L Missense_Mutation p.R2672C 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3713-01 1 155449710 155449710 C T ASH1L Missense_Mutation p.R984H 0.27 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-AA-3713-01 1 156214003 156214003 C T PAQR6 Silent p.Q235Q 0.40 TCGA-AA-3713-01 1 156347812 156347812 G A RHBG Missense_Mutation p.V136M 0.26 deleterious(0.02) possibly_damaging(0.804) TCGA-AA-3713-01 1 156449440 156449441 - G MEF2D Frame_Shift_Ins p.Q182Pfs*20 0.29 TCGA-AA-3713-01 1 15653613 15653613 G A FHAD1 Missense_Mutation p.R116Q 0.29 tolerated(0.92) benign(0.002) TCGA-AA-3713-01 1 156693187 156693187 T C ISG20L2 Missense_Mutation p.E339G 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 1 156877507 156877507 C - PEAR1 Frame_Shift_Del p.P252Lfs*125 0.10 TCGA-AA-3713-01 1 156933367 156933367 T G ARHGEF11 Missense_Mutation p.K328T 0.25 deleterious(0.01) probably_damaging(0.931) TCGA-AA-3713-01 1 157490847 157490847 G A FCRL5 Silent p.L825L 0.32 TCGA-AA-3713-01 1 158325818 158325818 C T CD1E Missense_Mutation p.A276V 0.31 tolerated(0.11) benign(0.097) TCGA-AA-3713-01 1 158908297 158908297 A G PYHIN1 Missense_Mutation p.T126A 0.33 tolerated(0.3) benign(0.115) TCGA-AA-3713-01 1 159163792 159163792 G A CADM3 Missense_Mutation p.G252E 0.26 tolerated(0.05) benign(0.138) TCGA-AA-3713-01 1 160011982 160011982 G C KCNJ10 Missense_Mutation p.T114R 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-AA-3713-01 1 16103673 16103673 C T FBLIM1 3'Flank 0.25 TCGA-AA-3713-01 1 161143535 161143535 C T B4GALT3 Intron 0.07 TCGA-AA-3713-01 1 16254929 16254929 C T SPEN Nonsense_Mutation p.R732* 0.25 TCGA-AA-3713-01 1 163306545 163306545 A - NUF2 Frame_Shift_Del p.K115Nfs*7 0.23 TCGA-AA-3713-01 1 16474934 16474934 C T EPHA2 Silent p.L254L 0.49 TCGA-AA-3713-01 1 165218837 165218837 C T LMX1A Missense_Mutation p.A102T 0.27 tolerated(0.14) possibly_damaging(0.474) TCGA-AA-3713-01 1 167653222 167653222 C T RCSD1 Missense_Mutation p.A31V 0.42 tolerated(0.05) probably_damaging(0.999) TCGA-AA-3713-01 1 16785439 16785439 G A NECAP2 Missense_Mutation p.G257D 0.26 deleterious_low_confidence(0.01) benign(0) TCGA-AA-3713-01 1 168014205 168014205 T C DCAF6 Silent p.L666L 0.25 TCGA-AA-3713-01 1 169790866 169790867 - T C1orf112 Frame_Shift_Ins p.A253Cfs*9 0.24 TCGA-AA-3713-01 1 170024447 170024447 T - KIFAP3 Frame_Shift_Del p.I55Sfs*13 0.18 TCGA-AA-3713-01 1 17349180 17349180 G A SDHB Missense_Mutation p.R230C 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 1 177199270 177199270 C T BRINP2 Silent p.Y86Y 0.23 TCGA-AA-3713-01 1 177250356 177250356 A G BRINP2 Missense_Mutation p.T682A 0.30 deleterious(0.03) benign(0.002) TCGA-AA-3713-01 1 178863148 178863148 A - RALGPS2 Frame_Shift_Del p.K475Sfs*4 0.33 TCGA-AA-3713-01 1 17964407 17964407 G A ARHGEF10L Missense_Mutation p.R651H 0.22 deleterious(0.04) probably_damaging(0.948) TCGA-AA-3713-01 1 180886057 180886057 G A KIAA1614 Missense_Mutation p.G273D 0.27 tolerated(0.08) possibly_damaging(0.575) TCGA-AA-3713-01 1 185878542 185878542 C T HMCN1 Missense_Mutation p.A232V 0.29 probably_damaging(0.935) TCGA-AA-3713-01 1 19439076 19439076 G A UBR4 Missense_Mutation p.R3915C 0.33 probably_damaging(0.973) TCGA-AA-3713-01 1 1961427 1961427 C T GABRD Silent p.D355D 0.29 TCGA-AA-3713-01 1 196879470 196879470 C T CFHR4 Missense_Mutation p.R286C 0.23 tolerated(0.17) possibly_damaging(0.831) TCGA-AA-3713-01 1 200090021 200090021 G A NR5A2 Missense_Mutation p.R439H 0.22 tolerated(0.53) benign(0.014) TCGA-AA-3713-01 1 202092197 202092197 G A GPR37L1 Missense_Mutation p.E36K 0.30 tolerated(0.74) benign(0.001) TCGA-AA-3713-01 1 203097973 203097973 C T ADORA1 Missense_Mutation p.P2S 0.31 tolerated(0.32) benign(0.001) TCGA-AA-3713-01 1 203134882 203134882 G A ADORA1 Missense_Mutation p.G279S 0.29 tolerated(0.1) probably_damaging(0.993) TCGA-AA-3713-01 1 204228461 204228461 C T PLEKHA6 Missense_Mutation p.R311H 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 1 204923995 204923995 G A NFASC Missense_Mutation p.V151M 0.29 tolerated(0.09) possibly_damaging(0.886) TCGA-AA-3713-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.23 TCGA-AA-3713-01 1 205042212 205042212 A T CNTN2 Missense_Mutation p.D954V 0.30 deleterious(0.01) possibly_damaging(0.689) TCGA-AA-3713-01 1 207139176 207139177 - T FCAMR Frame_Shift_Ins p.R66Kfs*103 0.24 TCGA-AA-3713-01 1 207510686 207510686 C T CD55 Missense_Mutation p.T331I 0.27 tolerated(0.22) possibly_damaging(0.899) TCGA-AA-3713-01 1 207646338 207646338 C A CR2 Missense_Mutation p.L598I 0.27 deleterious(0) benign(0.225) TCGA-AA-3713-01 1 208266196 208266196 G A PLXNA2 Missense_Mutation p.R678C 0.29 deleterious(0.01) possibly_damaging(0.651) TCGA-AA-3713-01 1 21014419 21014419 C A KIF17 Missense_Mutation p.G467V 0.09 deleterious_low_confidence(0.03) benign(0.039) TCGA-AA-3713-01 1 211192128 211192129 - CT KCNH1 Frame_Shift_Ins p.S343Rfs*12 0.22 TCGA-AA-3713-01 1 212273604 212273604 G A DTL Silent p.T424T 0.15 TCGA-AA-3713-01 1 212538545 212538545 C T TMEM206 3'UTR 0.31 TCGA-AA-3713-01 1 21924185 21924185 A G RAP1GAP 3'UTR 0.23 TCGA-AA-3713-01 1 22333488 22333488 C T CELA3A Silent p.T160T 0.27 TCGA-AA-3713-01 1 224918219 224918219 C T CNIH3 Missense_Mutation p.A85V 0.15 tolerated(0.06) possibly_damaging(0.817) TCGA-AA-3713-01 1 225692735 225692735 T - ENAH Frame_Shift_Del p.N520Ifs*39 0.28 TCGA-AA-3713-01 1 226125079 226125079 C A LEFTY2 3'UTR 0.38 TCGA-AA-3713-01 1 227261695 227261695 G A CDC42BPA Missense_Mutation p.R869C 0.26 deleterious(0) probably_damaging(0.988) TCGA-AA-3713-01 1 229737984 229737984 G A TAF5L Silent p.D310D 0.22 TCGA-AA-3713-01 1 230827253 230827253 C T COG2 Silent p.S686S 0.13 TCGA-AA-3713-01 1 230937400 230937400 T G CAPN9 3'UTR 0.47 TCGA-AA-3713-01 1 233112239 233112239 C T NTPCR Intron 0.30 TCGA-AA-3713-01 1 235357476 235357477 - T ARID4B Frame_Shift_Ins p.N659Kfs*3 0.23 TCGA-AA-3713-01 1 236192896 236192896 G A NID1 Silent p.S564S 0.11 TCGA-AA-3713-01 1 24123059 24123059 C T GALE Silent p.T271T 0.26 TCGA-AA-3713-01 1 241519037 241519037 C - RGS7 Frame_Shift_Del p.V14Wfs*18 0.27 TCGA-AA-3713-01 1 241936208 241936208 G A WDR64 Missense_Mutation p.G792E 0.23 deleterious(0) probably_damaging(0.982) TCGA-AA-3713-01 1 244214711 244214711 G T ZBTB18 5'UTR 0.29 TCGA-AA-3713-01 1 244715968 244715968 G A C1orf101 Missense_Mutation p.R294Q 0.30 tolerated(0.53) benign(0.018) TCGA-AA-3713-01 1 248789635 248789635 G T OR2T11 Silent p.P265P 0.29 TCGA-AA-3713-01 1 248790376 248790376 A G OR2T11 Silent p.S18S 0.24 TCGA-AA-3713-01 1 26607643 26607643 G A SH3BGRL3 3'UTR 0.42 TCGA-AA-3713-01 1 27057763 27057763 T C ARID1A Missense_Mutation p.S491P 0.27 benign(0.01) TCGA-AA-3713-01 1 27877971 27877971 G A AHDC1 Missense_Mutation p.T219M 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.897) TCGA-AA-3713-01 1 28176703 28176703 C T PPP1R8 Missense_Mutation p.P268S 0.38 tolerated(0.08) possibly_damaging(0.762) TCGA-AA-3713-01 1 28209185 28209185 A G THEMIS2 Silent p.S450S 0.10 TCGA-AA-3713-01 1 33237297 33237297 G A KIAA1522 Silent p.P839P 0.23 TCGA-AA-3713-01 1 33363763 33363763 G A TMEM54 Silent p.C58C 0.28 TCGA-AA-3713-01 1 33841026 33841026 G A PHC2 Missense_Mutation p.R39C 0.29 deleterious(0) possibly_damaging(0.893) TCGA-AA-3713-01 1 34008416 34008416 C T CSMD2 Missense_Mutation p.V2917I 0.21 tolerated(0.46) benign(0.01) TCGA-AA-3713-01 1 3410359 3410359 G A MEGF6 Missense_Mutation p.R1455C 0.26 deleterious(0.01) possibly_damaging(0.836) TCGA-AA-3713-01 1 34666414 34666414 A C C1orf94 Missense_Mutation p.S351R 0.26 deleterious(0) possibly_damaging(0.809) TCGA-AA-3713-01 1 35484912 35484912 A - ZMYM6 Intron 0.27 TCGA-AA-3713-01 1 36306920 36306920 C T AGO4 Missense_Mutation p.R627W 0.26 deleterious(0) probably_damaging(0.993) TCGA-AA-3713-01 1 37285408 37285408 G A GRIK3 Missense_Mutation p.S601F 0.25 deleterious(0) possibly_damaging(0.647) TCGA-AA-3713-01 1 38027214 38027214 C T DNALI1 Nonsense_Mutation p.R174* 0.20 TCGA-AA-3713-01 1 38187399 38187399 G T EPHA10 Silent p.A693A 0.34 TCGA-AA-3713-01 1 38219887 38219887 G - EPHA10 Frame_Shift_Del p.R336Gfs*13 0.33 TCGA-AA-3713-01 1 39788324 39788324 G A MACF1 Silent p.S1363S 0.29 TCGA-AA-3713-01 1 39907962 39907962 G T MACF1 Missense_Mutation p.E4247D 0.18 benign(0.389) TCGA-AA-3713-01 1 40149653 40149653 C T HPCAL4 Missense_Mutation p.G112S 0.25 tolerated(0.06) probably_damaging(1) TCGA-AA-3713-01 1 40205858 40205858 A G PPIE Missense_Mutation p.D18G 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3713-01 1 40236798 40236798 C T OXCT2 Missense_Mutation p.A44T 0.23 tolerated(0.85) benign(0.002) TCGA-AA-3713-01 1 41976057 41976058 - A HIVEP3 3'UTR 0.31 TCGA-AA-3713-01 1 45472400 45472400 G - HECTD3 Frame_Shift_Del p.V564Cfs*41 0.17 TCGA-AA-3713-01 1 45794042 45794043 - G HPDL 3'UTR 0.23 TCGA-AA-3713-01 1 46491405 46491405 C T MAST2 Missense_Mutation p.R613C 0.13 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AA-3713-01 1 47395664 47395664 G A CYP4A11 3'UTR 0.31 TCGA-AA-3713-01 1 47407084 47407084 G T CYP4A11 Missense_Mutation p.P8T 0.27 tolerated(0.36) benign(0.009) TCGA-AA-3713-01 1 53600067 53600067 A G SLC1A7 Missense_Mutation p.L57P 0.30 deleterious(0) probably_damaging(0.992) TCGA-AA-3713-01 1 53726225 53726225 C T LRP8 Missense_Mutation p.R656Q 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3713-01 1 54871649 54871649 G T SSBP3 Silent p.P11P 0.24 TCGA-AA-3713-01 1 60312815 60312815 C T HOOK1 Missense_Mutation p.A296V 0.27 deleterious(0.02) probably_damaging(1) TCGA-AA-3713-01 1 6246818 6246818 G A RPL22 Missense_Mutation p.R101C 0.23 deleterious(0.05) benign(0.156) TCGA-AA-3713-01 1 62747224 62747224 C T KANK4 Missense_Mutation p.D5N 0.30 tolerated(0.06) benign(0.002) TCGA-AA-3713-01 1 6521251 6521251 C T TNFRSF25 3'UTR 0.24 TCGA-AA-3713-01 1 67195073 67195073 C T SGIP1 Silent p.H623H 0.26 TCGA-AA-3713-01 1 75684978 75684978 C - SLC44A5 Frame_Shift_Del p.H411Ifs*58 0.26 TCGA-AA-3713-01 1 77747989 77747989 C T AK5 5'UTR 0.31 TCGA-AA-3713-01 1 77779564 77779564 C T AK5 Intron 0.23 TCGA-AA-3713-01 1 8384626 8384626 C - SLC45A1 Frame_Shift_Del p.Q81Rfs*28 0.21 TCGA-AA-3713-01 1 8927233 8927233 G T ENO1 Silent p.P129P 0.26 TCGA-AA-3713-01 1 89430626 89430626 C T CCBL2 Silent p.L113L 0.24 TCGA-AA-3713-01 1 90401833 90401833 T - LRRC8D 3'UTR 0.18 TCGA-AA-3713-01 1 9083081 9083081 G A SLC2A7 Silent p.D69D 0.26 TCGA-AA-3713-01 1 914825 914825 G - C1orf170 Frame_Shift_Del p.Q435Rfs*39 0.26 TCGA-AA-3713-01 1 91843646 91843646 T G HFM1 Missense_Mutation p.N444T 0.28 tolerated(0.1) benign(0.156) TCGA-AA-3713-01 1 9416535 9416535 G T SPSB1 Missense_Mutation p.Q195H 0.19 tolerated(0.07) benign(0.031) TCGA-AA-3713-01 1 95307648 95307648 C T SLC44A3 Silent p.L285L 0.27 TCGA-AA-3713-01 1 97544701 97544701 G T DPYD Missense_Mutation p.A970D 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 1 9795623 9795623 G A CLSTN1 Silent p.L595L 0.28 TCGA-AA-3713-01 1 99470033 99470033 G - LPPR5 Frame_Shift_Del p.V66Cfs*14 0.31 TCGA-AA-3713-01 1 99771244 99771244 T G LPPR4 Missense_Mutation p.L324V 0.26 tolerated(0.52) benign(0.097) TCGA-AA-3713-01 20 18471060 18471060 C - RBBP9 Frame_Shift_Del p.D105Mfs*70 0.22 TCGA-AA-3713-01 20 24994630 24994630 G C ACSS1 Missense_Mutation p.F473L 0.26 tolerated(0.11) benign(0.052) TCGA-AA-3713-01 20 2736415 2736415 C - EBF4 Frame_Shift_Del p.P559Qfs*156 0.29 TCGA-AA-3713-01 20 2778920 2778920 G A CPXM1 Silent p.G156G 0.34 TCGA-AA-3713-01 20 30193763 30193763 C - ID1 Intron 0.34 TCGA-AA-3713-01 20 30407371 30407371 G A MYLK2 5'UTR 0.20 TCGA-AA-3713-01 20 30686922 30686922 C T HCK Silent p.G454G 0.23 TCGA-AA-3713-01 20 30789952 30789952 G - PLAGL2 Frame_Shift_Del p.W11Gfs*15 0.25 TCGA-AA-3713-01 20 31606505 31606505 G A BPIFB2 Silent p.L244L 0.33 TCGA-AA-3713-01 20 3215484 3215484 C - SLC4A11 Frame_Shift_Del p.D92Mfs*51 0.27 TCGA-AA-3713-01 20 33703563 33703563 C - EDEM2 Frame_Shift_Del p.Y471Tfs*21 0.28 TCGA-AA-3713-01 20 34065919 34065922 TAAG - CEP250 Frame_Shift_Del p.E698Hfs*36 0.24 TCGA-AA-3713-01 20 34240795 34240795 C T RBM12 Missense_Mutation p.G817E 0.25 tolerated(0.16) unknown(0) TCGA-AA-3713-01 20 35177701 35177701 G A MYL9 3'UTR 0.33 TCGA-AA-3713-01 20 36770569 36770569 C T TGM2 Missense_Mutation p.V298M 0.26 deleterious(0) probably_damaging(0.996) TCGA-AA-3713-01 20 3684491 3684491 G - SIGLEC1 Frame_Shift_Del p.I319Sfs*12 0.30 TCGA-AA-3713-01 20 3759095 3759095 C T SPEF1 Silent p.E192E 0.30 TCGA-AA-3713-01 20 3767048 3767048 T G CENPB Missense_Mutation p.K28T 0.33 deleterious(0.01) unknown(0) TCGA-AA-3713-01 20 41101086 41101086 C T PTPRT Missense_Mutation p.V424M 0.21 tolerated(0.11) benign(0.238) TCGA-AA-3713-01 20 43726521 43726521 G A KCNS1 Missense_Mutation p.R298C 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-AA-3713-01 20 45194937 45194937 G A SLC13A3 Silent p.I475I 0.23 TCGA-AA-3713-01 20 45242360 45242360 C T SLC13A3 Missense_Mutation p.G39D 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 20 47248856 47248856 C T PREX1 Silent p.A1495A 0.08 TCGA-AA-3713-01 20 47269921 47269921 C T PREX1 Missense_Mutation p.R775Q 0.26 tolerated(0.06) benign(0.148) TCGA-AA-3713-01 20 47733715 47733715 G T STAU1 Missense_Mutation p.P527Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 20 47752427 47752427 A G STAU1 Silent p.S184S 0.25 TCGA-AA-3713-01 20 49177972 49177972 T C PTPN1 Missense_Mutation p.Y46H 0.36 deleterious(0.02) probably_damaging(0.98) TCGA-AA-3713-01 20 49197838 49197838 G - PTPN1 Frame_Shift_Del p.G377Efs*27 0.23 TCGA-AA-3713-01 20 51872069 51872069 G A TSHZ2 Missense_Mutation p.C691Y 0.38 deleterious(0.01) benign(0.248) TCGA-AA-3713-01 20 57415940 57415940 A G RP4-806M20.3 5'Flank 0.30 TCGA-AA-3713-01 20 60294435 60294435 T - RP11-429E11.3 5'UTR 0.27 TCGA-AA-3713-01 20 60739270 60739270 C T SS18L1 Missense_Mutation p.A264V 0.09 deleterious_low_confidence(0.02) benign(0.154) TCGA-AA-3713-01 20 60971440 60971440 G A CABLES2 Missense_Mutation p.P153L 0.25 deleterious(0.04) probably_damaging(0.992) TCGA-AA-3713-01 20 60991293 60991293 C T RBBP8NL Splice_Site p.X105_splice 0.29 TCGA-AA-3713-01 20 61510712 61510712 C T DIDO1 Missense_Mutation p.R2199Q 0.30 benign(0) TCGA-AA-3713-01 20 61513370 61513370 G A DIDO1 Missense_Mutation p.P1313L 0.29 probably_damaging(0.998) TCGA-AA-3713-01 20 61981545 61981545 C T CHRNA4 Silent p.P406P 0.23 TCGA-AA-3713-01 20 62120430 62120430 C T EEF1A2 Missense_Mutation p.A369T 0.28 tolerated_low_confidence(0.08) benign(0.024) TCGA-AA-3713-01 20 62518945 62518945 A G TPD52L2 Missense_Mutation p.M178V 0.27 tolerated(0.11) probably_damaging(0.992) TCGA-AA-3713-01 20 6751065 6751065 C T BMP2 Missense_Mutation p.R98W 0.24 tolerated(0.17) probably_damaging(0.993) TCGA-AA-3713-01 20 8678365 8678365 C T PLCB1 Missense_Mutation p.R368W 0.31 deleterious(0) probably_damaging(0.964) TCGA-AA-3713-01 20 9510317 9510317 G A LAMP5 Silent p.E231E 0.31 TCGA-AA-3713-01 21 31874329 31874329 C A KRTAP19-5 Missense_Mutation p.C27F 0.30 tolerated_low_confidence(0.13) unknown(0) TCGA-AA-3713-01 21 34648936 34648936 C T IL10RB Missense_Mutation p.T70I 0.27 tolerated(0.23) benign(0.011) TCGA-AA-3713-01 21 37591766 37591766 C - DOPEY2 Frame_Shift_Del p.Q410Rfs*6 0.21 TCGA-AA-3713-01 21 41151173 41151173 G A IGSF5 Missense_Mutation p.R292H 0.31 tolerated(0.57) benign(0.049) TCGA-AA-3713-01 21 41384893 41384893 A - DSCAM 3'UTR 0.28 TCGA-AA-3713-01 21 41459186 41459186 C T DSCAM Silent p.G1293G 0.23 TCGA-AA-3713-01 21 42080432 42080432 T A DSCAM Silent p.T103T 0.26 TCGA-AA-3713-01 21 43504273 43504273 C T UMODL1 Silent p.C133C 0.21 TCGA-AA-3713-01 21 45821604 45821604 G A TRPM2 Missense_Mutation p.A788T 0.26 tolerated(0.3) benign(0.004) TCGA-AA-3713-01 21 46021525 46021525 C - KRTAP10-7 Frame_Shift_Del p.T337Pfs*41 0.33 TCGA-AA-3713-01 21 46603414 46603414 C T ADARB1 Missense_Mutation p.P462L 0.29 tolerated(0.35) possibly_damaging(0.867) TCGA-AA-3713-01 21 47419072 47419072 C T COL6A1 Silent p.N560N 0.30 TCGA-AA-3713-01 22 16256648 16256648 G A POTEH 3'UTR 0.04 TCGA-AA-3713-01 22 19029358 19029358 C T DGCR2 Missense_Mutation p.R374Q 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3713-01 22 19163733 19163733 G A SLC25A1 Silent p.R282R 0.37 TCGA-AA-3713-01 22 19220983 19220983 G A CLTCL1 Missense_Mutation p.R444C 0.35 deleterious(0) benign(0.002) TCGA-AA-3713-01 22 20812122 20812122 C T KLHL22 Nonsense_Mutation p.W426* 0.22 TCGA-AA-3713-01 22 21141385 21141385 G - SERPIND1 3'UTR 0.23 TCGA-AA-3713-01 22 21329043 21329043 G A AIFM3 Missense_Mutation p.D220N 0.28 deleterious(0.02) possibly_damaging(0.819) TCGA-AA-3713-01 22 21350083 21350083 C T LZTR1 Missense_Mutation p.A664V 0.31 tolerated(0.25) benign(0.029) TCGA-AA-3713-01 22 21380824 21380824 C A P2RX6 Missense_Mutation p.A415D 0.28 tolerated(0.31) benign(0.074) TCGA-AA-3713-01 22 21989349 21989349 C T CCDC116 Missense_Mutation p.R333C 0.25 tolerated(0.7) benign(0.001) TCGA-AA-3713-01 22 23637311 23637311 C T BCR Missense_Mutation p.T994M 0.28 deleterious(0.03) probably_damaging(0.938) TCGA-AA-3713-01 22 24562654 24562654 G A CABIN1 Silent p.R1685R 0.23 TCGA-AA-3713-01 22 24583573 24583573 C T SUSD2 Silent p.Y642Y 0.24 TCGA-AA-3713-01 22 25264465 25264465 C T SGSM1 Missense_Mutation p.H373Y 0.24 deleterious(0.02) possibly_damaging(0.477) TCGA-AA-3713-01 22 26264331 26264331 G A MYO18B Silent p.A1310A 0.22 TCGA-AA-3713-01 22 28196403 28196403 C - MN1 Frame_Shift_Del p.P45Lfs*8 0.24 TCGA-AA-3713-01 22 29752426 29752426 G A AP1B1 Silent p.R235R 0.37 TCGA-AA-3713-01 22 29957599 29957599 G T NIPSNAP1 Missense_Mutation p.L159M 0.23 deleterious(0) probably_damaging(0.968) TCGA-AA-3713-01 22 30770026 30770026 C T CCDC157 Missense_Mutation p.R540W 0.08 deleterious(0) probably_damaging(0.997) TCGA-AA-3713-01 22 32109176 32109176 A - PRR14L Frame_Shift_Del p.L1550* 0.21 TCGA-AA-3713-01 22 36716409 36716409 C T MYH9 Splice_Site p.X290_splice 0.24 TCGA-AA-3713-01 22 37602869 37602869 C A SSTR3 Missense_Mutation p.R325L 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 22 37637098 37637098 T C RAC2 Intron 0.28 TCGA-AA-3713-01 22 37770516 37770516 C T ELFN2 Silent p.A353A 0.27 TCGA-AA-3713-01 22 40717174 40717174 T G TNRC6B Silent p.T1685T 0.23 TCGA-AA-3713-01 22 41513540 41513540 G A EP300 Silent p.T148T 0.16 TCGA-AA-3713-01 22 41924038 41924038 G A POLR3H 3'UTR 0.23 TCGA-AA-3713-01 22 42458949 42458950 - G NAGA Frame_Shift_Ins p.L280Pfs*57 0.24 TCGA-AA-3713-01 22 43614262 43614262 G A SCUBE1 Silent p.C630C 0.22 TCGA-AA-3713-01 22 46929866 46929866 G A CELSR1 Missense_Mutation p.R1068W 0.31 deleterious(0.01) probably_damaging(0.93) TCGA-AA-3713-01 22 47095308 47095308 C T CERK Missense_Mutation p.R282H 0.26 deleterious(0) probably_damaging(0.978) TCGA-AA-3713-01 22 50656993 50656993 G C TUBGCP6 Silent p.G1626G 0.22 TCGA-AA-3713-01 22 50750553 50750553 G A DENND6B 3'UTR 0.27 TCGA-AA-3713-01 22 50853118 50853118 C T PPP6R2 Silent p.H184H 0.30 TCGA-AA-3713-01 22 50882414 50882414 G T PPP6R2 Missense_Mutation p.S874I 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.667) TCGA-AA-3713-01 22 50961304 50961304 C T NCAPH2 Missense_Mutation p.R495C 0.24 deleterious(0) benign(0.397) TCGA-AA-3713-01 2 102448205 102448205 G T MAP4K4 Missense_Mutation p.Q177H 0.25 deleterious_low_confidence(0) unknown(0) TCGA-AA-3713-01 2 103090108 103090108 A G SLC9A4 5'UTR 0.19 TCGA-AA-3713-01 2 103125345 103125345 A - SLC9A4 Frame_Shift_Del p.T483Pfs*15 0.24 TCGA-AA-3713-01 2 106498382 106498382 G A NCK2 Silent p.S275S 0.28 TCGA-AA-3713-01 2 109068912 109068912 A G GCC2 Missense_Mutation p.D69G 0.29 deleterious(0.04) benign(0.004) TCGA-AA-3713-01 2 109380516 109380516 C T RANBP2 Missense_Mutation p.P1174L 0.31 deleterious(0) possibly_damaging(0.458) TCGA-AA-3713-01 2 109964325 109964325 G A SH3RF3 Missense_Mutation p.A257T 0.24 tolerated(0.39) benign(0.003) TCGA-AA-3713-01 2 110375287 110375287 A G SOWAHC 3'UTR 0.30 TCGA-AA-3713-01 2 111428131 111428131 C T BUB1 Missense_Mutation p.R146H 0.28 tolerated(0.2) benign(0.017) TCGA-AA-3713-01 2 113484267 113484267 G A NT5DC4 Silent p.G374G 0.27 TCGA-AA-3713-01 2 113888656 113888656 T C IL1RN Silent p.A83A 0.29 TCGA-AA-3713-01 2 113940073 113940073 A G PSD4 Missense_Mutation p.M14V 0.31 tolerated_low_confidence(1) benign(0) TCGA-AA-3713-01 2 119600630 119600630 G A EN1 Missense_Mutation p.R355C 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 2 120124566 120124566 C T DBI 5'Flank 0.25 TCGA-AA-3713-01 2 120236444 120236444 C T SCTR Missense_Mutation p.G82S 0.32 deleterious(0.01) probably_damaging(0.948) TCGA-AA-3713-01 2 120395944 120395944 G A PCDP1 Missense_Mutation p.R695H 0.29 tolerated(0.35) benign(0) TCGA-AA-3713-01 2 120979650 120979650 G A TMEM185B Silent p.H301H 0.15 TCGA-AA-3713-01 2 125672771 125672774 ATAC - CNTNAP5 3'UTR 0.35 TCGA-AA-3713-01 2 125672792 125672792 C T CNTNAP5 3'UTR 0.19 TCGA-AA-3713-01 2 128186037 128186037 G A PROC Missense_Mutation p.A301T 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 2 128699460 128699460 C T SAP130 3'UTR 0.14 TCGA-AA-3713-01 2 130913677 130913677 G A SMPD4 Missense_Mutation p.P446L 0.22 deleterious(0) probably_damaging(0.96) TCGA-AA-3713-01 2 133403245 133403245 C A LYPD1 3'UTR 0.27 TCGA-AA-3713-01 2 135738842 135738842 G A MAP3K19 Missense_Mutation p.P1157S 0.32 deleterious(0) probably_damaging(0.942) TCGA-AA-3713-01 2 136379169 136379169 T G R3HDM1 Missense_Mutation p.L137V 0.23 deleterious(0) benign(0.234) TCGA-AA-3713-01 2 142888293 142888293 G C LRP1B Silent p.S2S 0.25 TCGA-AA-3713-01 2 1481013 1481013 C T TPO Silent p.D325D 0.27 TCGA-AA-3713-01 2 151343218 151343218 C A RND3 Missense_Mutation p.W76C 0.31 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 2 155555963 155555963 G A KCNJ3 Missense_Mutation p.A226T 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 2 157186683 157186683 C T NR4A2 Missense_Mutation p.A6T 0.18 tolerated(0.33) benign(0.2) TCGA-AA-3713-01 2 158272587 158272587 G A CYTIP Missense_Mutation p.P228S 0.21 tolerated(0.88) benign(0.01) TCGA-AA-3713-01 2 159481642 159481642 C T PKP4 Missense_Mutation p.R286W 0.24 deleterious(0) possibly_damaging(0.776) TCGA-AA-3713-01 2 159660855 159660856 - A DAPL1 Frame_Shift_Ins p.T43Nfs*23 0.18 TCGA-AA-3713-01 2 161141518 161141518 G A RBMS1 Missense_Mutation p.A265V 0.24 tolerated(0.09) possibly_damaging(0.477) TCGA-AA-3713-01 2 163099960 163099960 T - FAP 5'UTR 0.21 TCGA-AA-3713-01 2 1653182 1653182 G A PXDN Silent p.H790H 0.26 TCGA-AA-3713-01 2 165551920 165551920 C T COBLL1 Missense_Mutation p.G699D 0.24 tolerated(0.25) benign(0.02) TCGA-AA-3713-01 2 165994435 165994435 T C SCN3A Missense_Mutation p.Y782C 0.29 deleterious(0) probably_damaging(0.99) TCGA-AA-3713-01 2 166894495 166894496 - A SCN1A Frame_Shift_Ins p.G913Wfs*2 0.21 TCGA-AA-3713-01 2 1670092 1670092 G A PXDN Silent p.G395G 0.31 TCGA-AA-3713-01 2 170506881 170506882 - T CCDC173 Frame_Shift_Ins p.N370Kfs*19 0.28 TCGA-AA-3713-01 2 170783411 170783411 G A UBR3 Silent p.E756E 0.26 TCGA-AA-3713-01 2 173457690 173457690 T C PDK1 Missense_Mutation p.S362P 0.28 deleterious(0.01) possibly_damaging(0.862) TCGA-AA-3713-01 2 175689240 175689240 T C CHN1 Missense_Mutation p.T212A 0.30 deleterious(0.04) benign(0.307) TCGA-AA-3713-01 2 176965003 176965003 C T HOXD12 Silent p.C158C 0.22 TCGA-AA-3713-01 2 17698736 17698737 - T RAD51AP2 Frame_Shift_Ins p.T316Nfs*13 0.24 TCGA-AA-3713-01 2 179411950 179411950 G A TTN Silent p.H31434H 0.28 TCGA-AA-3713-01 2 179498195 179498195 G A TTN Silent p.G14297G 0.28 TCGA-AA-3713-01 2 179621399 179621399 G A TTN Nonsense_Mutation p.Q3602* 0.23 TCGA-AA-3713-01 2 180829282 180829282 A G CWC22 Silent p.I463I 0.27 TCGA-AA-3713-01 2 182542933 182542934 - G NEUROD1 Frame_Shift_Ins p.Y219Lfs*25 0.26 TCGA-AA-3713-01 2 183730823 183730823 A T FRZB Missense_Mutation p.I153N 0.21 deleterious(0) probably_damaging(0.963) TCGA-AA-3713-01 2 188353090 188353090 C A TFPI Missense_Mutation p.R111M 0.04 tolerated(0.07) benign(0.004) TCGA-AA-3713-01 2 189866275 189866275 C - COL3A1 Frame_Shift_Del p.G786Dfs*5 0.26 TCGA-AA-3713-01 2 201369584 201369584 C T KCTD18 Missense_Mutation p.A87T 0.23 deleterious(0.01) probably_damaging(1) TCGA-AA-3713-01 2 202002805 202002805 G A CFLAR Intron 0.30 TCGA-AA-3713-01 2 203995146 203995146 G A NBEAL1 Missense_Mutation p.A1142T 0.26 deleterious(0.04) benign(0.055) TCGA-AA-3713-01 2 211018995 211018995 G A KANSL1L Silent p.P104P 0.24 TCGA-AA-3713-01 2 212248770 212248770 A T ERBB4 Missense_Mutation p.V1166E 0.26 tolerated(0.08) benign(0.011) TCGA-AA-3713-01 2 212483967 212483967 T A ERBB4 Missense_Mutation p.I746F 0.23 deleterious(0) probably_damaging(0.958) TCGA-AA-3713-01 2 21252865 21252865 C A APOB Missense_Mutation p.G459W 0.25 possibly_damaging(0.649) TCGA-AA-3713-01 2 213403254 213403254 T - ERBB4 Frame_Shift_Del p.M1? 0.22 TCGA-AA-3713-01 2 215593481 215593481 C T BARD1 Silent p.R751R 0.28 TCGA-AA-3713-01 2 216269300 216269300 G A FN1 Missense_Mutation p.A1022V 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3713-01 2 219205490 219205490 C T PNKD Silent p.L169L 0.26 TCGA-AA-3713-01 2 219602823 219602824 - A TTLL4 Frame_Shift_Ins p.S144Kfs*71 0.17 TCGA-AA-3713-01 2 219826801 219826801 G A CDK5R2 3'UTR 0.32 TCGA-AA-3713-01 2 220136901 220136901 C A TUBA4B RNA 0.28 TCGA-AA-3713-01 2 223163342 223163342 G A PAX3 5'UTR 0.29 TCGA-AA-3713-01 2 223918634 223918634 A - KCNE4 3'UTR 0.23 TCGA-AA-3713-01 2 225668917 225668917 C A DOCK10 Missense_Mutation p.A1394S 0.22 tolerated(0.23) possibly_damaging(0.718) TCGA-AA-3713-01 2 227771525 227771525 C T RHBDD1 Missense_Mutation p.H195Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 2 231281021 231281021 G - SP100 Frame_Shift_Del p.G5Afs*4 0.21 TCGA-AA-3713-01 2 235951827 235951827 T A SH3BP4 Missense_Mutation p.L805Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 2 238461064 238461064 C T MLPH Missense_Mutation p.A587V 0.19 tolerated(0.21) benign(0.196) TCGA-AA-3713-01 2 241516388 241516388 G A RNPEPL1 Missense_Mutation p.R391Q 0.25 deleterious(0.04) probably_damaging(0.993) TCGA-AA-3713-01 2 242089906 242089906 C T PPP1R7 5'UTR 0.31 TCGA-AA-3713-01 2 242648676 242648676 C T ING5 Missense_Mutation p.T52M 0.30 deleterious(0.02) possibly_damaging(0.863) TCGA-AA-3713-01 2 24360917 24360917 A - FAM228B Frame_Shift_Del p.R105Gfs*6 0.24 TCGA-AA-3713-01 2 25013251 25013251 C T PTRHD1 3'UTR 0.35 TCGA-AA-3713-01 2 25367907 25367907 C T EFR3B Missense_Mutation p.P710L 0.24 deleterious(0) probably_damaging(0.973) TCGA-AA-3713-01 2 31215867 31215867 C T GALNT14 Intron 0.38 TCGA-AA-3713-01 2 38975223 38975223 T C SRSF7 Missense_Mutation p.R180G 0.25 tolerated(0.16) unknown(0) TCGA-AA-3713-01 2 43779319 43779319 G A THADA Intron 0.24 TCGA-AA-3713-01 2 44161386 44161386 A G LRPPRC Silent p.D893D 0.29 TCGA-AA-3713-01 2 44528189 44528189 G A SLC3A1 Silent p.T353T 0.24 TCGA-AA-3713-01 2 48808315 48808315 T - STON1-GTF2A1L Frame_Shift_Del p.S183Qfs*39 0.14 TCGA-AA-3713-01 2 61610471 61610471 T A USP34 Missense_Mutation p.I252F 0.27 deleterious(0.01) possibly_damaging(0.888) TCGA-AA-3713-01 2 68882106 68882106 G A PROKR1 Missense_Mutation p.A194T 0.30 deleterious(0.01) possibly_damaging(0.658) TCGA-AA-3713-01 2 70130347 70130347 C A SNRNP27 Missense_Mutation p.A128D 0.04 deleterious(0.03) probably_damaging(0.958) TCGA-AA-3713-01 2 70392296 70392296 C A C2orf42 Silent p.L427L 0.18 TCGA-AA-3713-01 2 71305562 71305562 C A NAGK Missense_Mutation p.A366D 0.26 deleterious(0) probably_damaging(0.994) TCGA-AA-3713-01 2 72802794 72802794 G T EXOC6B Missense_Mutation p.Q225K 0.25 tolerated(0.54) benign(0.031) TCGA-AA-3713-01 2 73653609 73653609 C T ALMS1 Silent p.D422D 0.21 TCGA-AA-3713-01 2 73901050 73901050 G T ALMS1P RNA 0.32 TCGA-AA-3713-01 2 74328761 74328761 C - TET3 Frame_Shift_Del p.S1483Afs*5 0.27 TCGA-AA-3713-01 2 74762731 74762731 G T LOXL3 Missense_Mutation p.A467D 0.31 deleterious(0.01) possibly_damaging(0.87) TCGA-AA-3713-01 2 80530287 80530287 C T LRRTM1 Missense_Mutation p.D220N 0.28 deleterious(0) possibly_damaging(0.611) TCGA-AA-3713-01 2 85622675 85622675 C T CAPG Missense_Mutation p.A323T 0.20 deleterious(0.01) benign(0.002) TCGA-AA-3713-01 2 86266531 86266531 G A POLR1A Silent p.S1265S 0.30 TCGA-AA-3713-01 2 90139369 90139369 C T IGKV1D-16 Missense_Mutation p.A47V 0.27 deleterious(0.02) benign(0.246) TCGA-AA-3713-01 2 9658248 9658248 T C ADAM17 Silent p.G362G 0.34 TCGA-AA-3713-01 2 96798409 96798409 C T ASTL Silent p.A169A 0.24 TCGA-AA-3713-01 2 97492679 97492679 G A CNNM3 Silent p.S493S 0.24 TCGA-AA-3713-01 3 10050327 10050327 C T AC022007.5 RNA 0.19 TCGA-AA-3713-01 3 101038595 101038595 A C IMPG2 Missense_Mutation p.L56R 0.22 tolerated(0.35) benign(0.004) TCGA-AA-3713-01 3 108288313 108288313 G A KIAA1524 Missense_Mutation p.R346C 0.25 deleterious(0.01) possibly_damaging(0.827) TCGA-AA-3713-01 3 10865062 10865062 T A SLC6A11 Missense_Mutation p.V203D 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3713-01 3 10865149 10865149 C T SLC6A11 Intron 0.30 TCGA-AA-3713-01 3 111923223 111923223 A - SLC9C1 Frame_Shift_Del p.S672Hfs*9 0.19 TCGA-AA-3713-01 3 121409814 121409814 G T GOLGB1 Silent p.S2799S 0.20 TCGA-AA-3713-01 3 123665784 123665784 T A CCDC14 Missense_Mutation p.D363V 0.13 deleterious(0.01) benign(0.155) TCGA-AA-3713-01 3 123680219 123680219 C T CCDC14 5'UTR 0.26 TCGA-AA-3713-01 3 124646629 124646629 G A MUC13 Silent p.P87P 0.29 TCGA-AA-3713-01 3 12854747 12854748 - C CAND2 Frame_Shift_Ins p.K291Qfs*29 0.22 TCGA-AA-3713-01 3 130403135 130403135 C T PIK3R4 Missense_Mutation p.R1189H 0.29 deleterious(0.05) probably_damaging(0.977) TCGA-AA-3713-01 3 130735141 130735141 G A ASTE1 Missense_Mutation p.A519V 0.29 tolerated(0.28) benign(0.002) TCGA-AA-3713-01 3 133379900 133379900 A - TOPBP1 Frame_Shift_Del p.F24Lfs*7 0.29 TCGA-AA-3713-01 3 134967191 134967191 C - EPHB1 Frame_Shift_Del p.P845Hfs*34 0.30 TCGA-AA-3713-01 3 134967347 134967347 G A EPHB1 Missense_Mutation p.A896T 0.22 tolerated(0.29) benign(0) TCGA-AA-3713-01 3 13663399 13663399 G A FBLN2 Silent p.A760A 0.13 TCGA-AA-3713-01 3 1367634 1367634 A T CNTN6 Missense_Mutation p.E361V 0.27 deleterious(0) possibly_damaging(0.632) TCGA-AA-3713-01 3 142279282 142279282 T C ATR Missense_Mutation p.D455G 0.34 deleterious_low_confidence(0.03) benign(0.37) TCGA-AA-3713-01 3 142607676 142607676 C T PCOLCE2 Silent p.S21S 0.37 TCGA-AA-3713-01 3 146303893 146303893 T C PLSCR5 Missense_Mutation p.M262V 0.16 deleterious(0.04) benign(0.093) TCGA-AA-3713-01 3 148939579 148939579 T - CP Frame_Shift_Del p.M1? 0.21 TCGA-AA-3713-01 3 150873978 150873978 G A MED12L Missense_Mutation p.R196Q 0.31 tolerated(0.16) probably_damaging(0.986) TCGA-AA-3713-01 3 154802117 154802117 G A MME Splice_Site p.X54_splice 0.32 TCGA-AA-3713-01 3 155200506 155200506 A G PLCH1 Silent p.G1111G 0.24 TCGA-AA-3713-01 3 164906985 164906985 G A SLITRK3 Missense_Mutation p.A545V 0.24 tolerated(0.06) benign(0.079) TCGA-AA-3713-01 3 169550874 169550874 C T LRRIQ4 Missense_Mutation p.P478L 0.22 deleterious(0.01) benign(0.267) TCGA-AA-3713-01 3 169700664 169700664 A - SEC62 Frame_Shift_Del p.D144Mfs*58 0.29 TCGA-AA-3713-01 3 172537999 172537999 T C ECT2 Missense_Mutation p.L906S 0.29 deleterious_low_confidence(0) benign(0.185) TCGA-AA-3713-01 3 179131230 179131230 C T GNB4 Silent p.T223T 0.32 TCGA-AA-3713-01 3 182989332 182989332 T - B3GNT5 3'UTR 0.19 TCGA-AA-3713-01 3 183857922 183857922 C T EIF2B5 Nonsense_Mutation p.R274* 0.23 TCGA-AA-3713-01 3 184106414 184106414 A G CHRD Missense_Mutation p.Q865R 0.17 deleterious(0.02) possibly_damaging(0.512) TCGA-AA-3713-01 3 185209434 185209434 G A TMEM41A Missense_Mutation p.A229V 0.31 deleterious(0) probably_damaging(0.988) TCGA-AA-3713-01 3 190999982 190999982 A - UTS2B 5'UTR 0.22 TCGA-AA-3713-01 3 192635462 192635462 C T MB21D2 Silent p.A56A 0.25 TCGA-AA-3713-01 3 193082018 193082018 C T ATP13A5 Missense_Mutation p.A39T 0.11 tolerated(0.09) benign(0.004) TCGA-AA-3713-01 3 195960017 195960017 G A SLC51A Missense_Mutation p.V324I 0.29 tolerated(0.53) benign(0.002) TCGA-AA-3713-01 3 196730906 196730906 C T MFI2 Missense_Mutation p.G668D 0.14 tolerated(0.05) possibly_damaging(0.661) TCGA-AA-3713-01 3 27758893 27758893 C A EOMES Missense_Mutation p.G577C 0.24 tolerated(0.06) possibly_damaging(0.864) TCGA-AA-3713-01 3 31703442 31703443 - A OSBPL10 3'UTR 0.23 TCGA-AA-3713-01 3 32859629 32859629 C T TRIM71 Silent p.C19C 0.22 TCGA-AA-3713-01 3 3886823 3886823 A - LRRN1 Frame_Shift_Del p.N168Ifs*3 0.22 TCGA-AA-3713-01 3 3887634 3887634 G A LRRN1 Missense_Mutation p.V437M 0.26 tolerated(0.09) benign(0.107) TCGA-AA-3713-01 3 42908539 42908540 - T ACKR2 3'UTR 0.28 TCGA-AA-3713-01 3 43607144 43607144 C T ANO10 Splice_Site p.X431_splice 0.24 TCGA-AA-3713-01 3 44310780 44310780 A - TOPAZ1 Frame_Shift_Del p.N1080Mfs*9 0.19 TCGA-AA-3713-01 3 44776774 44776774 T - ZNF501 3'UTR 0.29 TCGA-AA-3713-01 3 44846527 44846527 G T KIF15 Nonsense_Mutation p.G566* 0.25 TCGA-AA-3713-01 3 46399715 46399715 C T CCR2 Nonsense_Mutation p.R233* 0.27 TCGA-AA-3713-01 3 46563098 46563098 C T LRRC2 Missense_Mutation p.G327D 0.33 tolerated(0.62) benign(0.002) TCGA-AA-3713-01 3 46730930 46730930 T C ALS2CL Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-AA-3713-01 3 47033395 47033395 A G NBEAL2 Missense_Mutation p.N331D 0.25 tolerated(0.06) possibly_damaging(0.752) TCGA-AA-3713-01 3 47455497 47455497 G A SCAP Silent p.Y1229Y 0.28 TCGA-AA-3713-01 3 47908808 47908808 T - MAP4 Frame_Shift_Del p.V999* 0.20 TCGA-AA-3713-01 3 48228234 48228234 C G CDC25A Missense_Mutation p.S69T 0.28 tolerated(0.23) benign(0.089) TCGA-AA-3713-01 3 49068014 49068014 G - QRICH1 Frame_Shift_Del p.N735Tfs*20 0.25 TCGA-AA-3713-01 3 49719319 49719319 G - APEH Splice_Site p.X509_splice 0.24 TCGA-AA-3713-01 3 49751350 49751350 G A RNF123 Missense_Mutation p.A949T 0.30 tolerated(0.5) benign(0.003) TCGA-AA-3713-01 3 50256294 50256294 A G SLC38A3 RNA 0.31 TCGA-AA-3713-01 3 50338465 50338466 - C HYAL1 Frame_Shift_Ins p.A315Gfs*69 0.18 TCGA-AA-3713-01 3 51263131 51263131 G A DOCK3 Missense_Mutation p.R435K 0.28 tolerated(0.78) probably_damaging(0.963) TCGA-AA-3713-01 3 52525960 52525960 G T NISCH Missense_Mutation p.G1326V 0.28 deleterious(0) probably_damaging(0.994) TCGA-AA-3713-01 3 52543930 52543930 G - STAB1 Frame_Shift_Del p.V800Cfs*113 0.29 TCGA-AA-3713-01 3 53796039 53796039 C T CACNA1D Silent p.D1287D 0.29 TCGA-AA-3713-01 3 57419492 57419492 C T DNAH12 Silent p.T1550T 0.32 TCGA-AA-3713-01 3 57431852 57431853 - C DNAH12 Frame_Shift_Ins p.E1339Gfs*6 0.21 TCGA-AA-3713-01 3 57843845 57843845 C T SLMAP Missense_Mutation p.R216W 0.24 deleterious(0.03) probably_damaging(1) TCGA-AA-3713-01 3 58097522 58097523 - C FLNB Frame_Shift_Ins p.A832Rfs*9 0.22 TCGA-AA-3713-01 3 58127656 58127656 G T FLNB Missense_Mutation p.W1758C 0.04 tolerated(0.07) possibly_damaging(0.619) TCGA-AA-3713-01 3 62384947 62384947 A - CADPS 3'UTR 0.23 TCGA-AA-3713-01 3 8944120 8944121 - T RAD18 Frame_Shift_Ins p.T371Nfs*9 0.08 TCGA-AA-3713-01 3 93779908 93779908 A - DHFRL1 Frame_Shift_Del p.S150Qfs*53 0.20 TCGA-AA-3713-01 3 98216541 98216541 A G OR5K2 Missense_Mutation p.H6R 0.17 tolerated(0.45) benign(0.004) TCGA-AA-3713-01 3 9990947 9990947 G A PRRT3 Missense_Mutation p.P285S 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3713-01 4 10502906 10502906 G T CLNK Missense_Mutation p.L372M 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 4 106193746 106193746 A G TET2 Missense_Mutation p.N1403S 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 4 106197682 106197682 C - TET2 3'UTR 0.21 TCGA-AA-3713-01 4 107845298 107845298 T C DKK2 Missense_Mutation p.H198R 0.21 deleterious(0) probably_damaging(0.966) TCGA-AA-3713-01 4 108955679 108955679 G A HADH 3'UTR 0.27 TCGA-AA-3713-01 4 11400995 11400995 A G HS3ST1 Missense_Mutation p.I212T 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3713-01 4 118006513 118006513 C T TRAM1L1 Missense_Mutation p.V13I 0.32 tolerated(0.57) benign(0.012) TCGA-AA-3713-01 4 125590728 125590728 G - ANKRD50 Frame_Shift_Del p.P1235Hfs*8 0.27 TCGA-AA-3713-01 4 126373626 126373626 C T FAT4 Nonsense_Mutation p.R3819* 0.50 TCGA-AA-3713-01 4 126411565 126411566 - G FAT4 Frame_Shift_Ins p.K4532Efs*21 0.27 TCGA-AA-3713-01 4 13485808 13485808 G - RAB28 5'UTR 0.23 TCGA-AA-3713-01 4 135121914 135121914 C T PABPC4L Silent p.Q145Q 0.54 TCGA-AA-3713-01 4 153244280 153244280 G T FBXW7 Missense_Mutation p.A626D 0.63 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 4 155033 155033 A G ZNF718 RNA 0.30 TCGA-AA-3713-01 4 162307430 162307430 T C FSTL5 Silent p.G671G 0.21 TCGA-AA-3713-01 4 1670494 1670494 A G FAM53A 5'UTR 0.25 TCGA-AA-3713-01 4 169317271 169317285 TAGTGCTACTATTTA AGTGATACTATTT DDX60L Splice_Site p.X1164_splice 0.10 TCGA-AA-3713-01 4 1746763 1746763 G A TACC3 3'UTR 0.30 TCGA-AA-3713-01 4 175598420 175598420 G A GLRA3 Nonsense_Mutation p.R246* 0.52 TCGA-AA-3713-01 4 17640954 17640954 C T FAM184B Missense_Mutation p.R862Q 0.25 tolerated(0.11) benign(0.081) TCGA-AA-3713-01 4 1808309 1808309 G A FGFR3 Silent p.T691T 0.24 TCGA-AA-3713-01 4 183063690 183063690 A - AC108142.1 RNA 0.13 TCGA-AA-3713-01 4 184930779 184930780 - A STOX2 Frame_Shift_Ins p.F266Ifs*11 0.29 TCGA-AA-3713-01 4 186083862 186083862 T C KIAA1430 3'UTR 0.30 TCGA-AA-3713-01 4 186429653 186429653 A G PDLIM3 Silent p.S154S 0.22 TCGA-AA-3713-01 4 186560143 186560143 C T SORBS2 Intron 0.23 TCGA-AA-3713-01 4 188924187 188924187 G A ZFP42 Missense_Mutation p.V76I 0.54 tolerated(1) benign(0) TCGA-AA-3713-01 4 2065750 2065750 G A NAT8L Missense_Mutation p.A269T 0.26 tolerated(0.61) benign(0.027) TCGA-AA-3713-01 4 21950265 21950265 G A KCNIP4 5'UTR 0.23 TCGA-AA-3713-01 4 24572287 24572287 T - DHX15 Frame_Shift_Del p.T231Pfs*6 0.23 TCGA-AA-3713-01 4 3219644 3219644 C G HTT Missense_Mutation p.P2403A 0.27 probably_damaging(0.999) TCGA-AA-3713-01 4 3450972 3450973 - G HGFAC Frame_Shift_Ins p.P601Afs*20 0.18 TCGA-AA-3713-01 4 37650904 37650904 T C RELL1 Missense_Mutation p.K103E 0.25 tolerated(0.44) probably_damaging(0.992) TCGA-AA-3713-01 4 39122698 39122698 G A KLHL5 3'UTR 0.30 TCGA-AA-3713-01 4 41984755 41984755 G A DCAF4L1 Missense_Mutation p.A316T 0.25 tolerated(0.08) probably_damaging(0.992) TCGA-AA-3713-01 4 42072644 42072644 C T SLC30A9 Missense_Mutation p.R452W 0.38 deleterious(0) probably_damaging(0.996) TCGA-AA-3713-01 4 44704980 44704981 - A GNPDA2 3'UTR 0.23 TCGA-AA-3713-01 4 47428081 47428081 T - GABRB1 3'UTR 0.17 TCGA-AA-3713-01 4 54231957 54231957 C - SCFD2 Frame_Shift_Del p.G51Vfs*27 0.24 TCGA-AA-3713-01 4 54327078 54327078 A - LNX1 Frame_Shift_Del p.L728Yfs*20 0.14 TCGA-AA-3713-01 4 57261352 57261352 G A PPAT 3'UTR 0.33 TCGA-AA-3713-01 4 57262844 57262844 G T PPAT Missense_Mutation p.P433H 0.25 deleterious(0) probably_damaging(0.982) TCGA-AA-3713-01 4 57796070 57796070 G A REST Missense_Mutation p.R349H 0.23 deleterious(0.03) possibly_damaging(0.87) TCGA-AA-3713-01 4 6302395 6302395 C - WFS1 Frame_Shift_Del p.L293Cfs*11 0.23 TCGA-AA-3713-01 4 6698844 6698844 C - S100P 3'UTR 0.22 TCGA-AA-3713-01 4 68610289 68610289 G - GNRHR Frame_Shift_Del p.H247Tfs*5 0.28 TCGA-AA-3713-01 4 71497574 71497575 - C ENAM Frame_Shift_Ins p.R46Pfs*6 0.20 TCGA-AA-3713-01 4 72897735 72897735 C T NPFFR2 Silent p.R39R 0.26 TCGA-AA-3713-01 4 72897872 72897872 C T NPFFR2 Missense_Mutation p.A85V 0.25 deleterious_low_confidence(0.01) benign(0.001) TCGA-AA-3713-01 4 76434395 76434395 T - RCHY1 Frame_Shift_Del p.I68Ffs*53 0.22 TCGA-AA-3713-01 4 8022005 8022005 G - ABLIM2 Frame_Shift_Del p.S432Afs*29 0.08 TCGA-AA-3713-01 4 83829043 83829043 A G THAP9 Missense_Mutation p.Y229C 0.23 tolerated(0.06) benign(0.202) TCGA-AA-3713-01 4 84382256 84382259 TTAA - FAM175A 3'UTR 0.28 TCGA-AA-3713-01 4 86988952 86988952 G A MAPK10 Missense_Mutation p.A320V 0.24 tolerated(0.2) benign(0.001) TCGA-AA-3713-01 4 87671742 87671742 C T PTPN13 Missense_Mutation p.P924S 0.31 tolerated(0.13) probably_damaging(0.987) TCGA-AA-3713-01 4 88056903 88056903 A G AFF1 3'UTR 0.31 TCGA-AA-3713-01 4 90170014 90170014 C A GPRIN3 Silent p.G416G 0.27 TCGA-AA-3713-01 4 96035885 96035885 G T BMPR1B Missense_Mutation p.C83F 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 4 9784578 9784578 T C DRD5 Missense_Mutation p.W309R 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 4 9785324 9785324 A G DRD5 3'UTR 0.11 TCGA-AA-3713-01 4 9785349 9785349 G C DRD5 3'UTR 0.18 TCGA-AA-3713-01 5 101631838 101631838 A C SLCO4C1 Missense_Mutation p.N43K 0.28 tolerated(0.67) benign(0.016) TCGA-AA-3713-01 5 102611694 102611694 C - C5orf30 Frame_Shift_Del p.P26Rfs*46 0.17 TCGA-AA-3713-01 5 1076829 1076829 G A SLC12A7 Silent p.S576S 0.34 TCGA-AA-3713-01 5 1076904 1076904 G A SLC12A7 Silent p.N551N 0.30 TCGA-AA-3713-01 5 109973978 109973978 G A TMEM232 Missense_Mutation p.A141V 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 5 112214308 112214309 TA - REEP5 3'UTR 0.47 TCGA-AA-3713-01 5 112256907 112256907 G T REEP5 Silent p.A55A 0.44 TCGA-AA-3713-01 5 115815886 115815886 C T SEMA6A Silent p.T394T 0.27 TCGA-AA-3713-01 5 121355884 121355884 A G SRFBP1 Missense_Mutation p.N152D 0.23 tolerated(0.13) benign(0.118) TCGA-AA-3713-01 5 121413632 121413632 C T LOX Missense_Mutation p.A17T 0.22 tolerated(0.37) benign(0.001) TCGA-AA-3713-01 5 1217003 1217003 C T SLC6A19 Silent p.P372P 0.34 TCGA-AA-3713-01 5 131820191 131820191 T C IRF1 Splice_Site p.X240_splice 0.29 TCGA-AA-3713-01 5 1318428 1318428 A - CLPTM1L 3'UTR 0.40 TCGA-AA-3713-01 5 132262874 132262874 G - AFF4 Frame_Shift_Del p.P330Lfs*2 0.16 TCGA-AA-3713-01 5 134332198 134332198 T A CATSPER3 Missense_Mutation p.I163N 0.15 deleterious(0) probably_damaging(0.993) TCGA-AA-3713-01 5 13735969 13735969 G A DNAH5 Missense_Mutation p.S3843L 0.27 benign(0.32) TCGA-AA-3713-01 5 137476521 137476521 C T BRD8 Missense_Mutation p.R1163H 0.23 tolerated(0.1) benign(0.001) TCGA-AA-3713-01 5 137763001 137763001 C T KDM3B Silent p.N1542N 0.21 TCGA-AA-3713-01 5 138749704 138749704 A C DNAJC18 3'UTR 0.30 TCGA-AA-3713-01 5 139507250 139507251 - A IGIP 5'UTR 0.23 TCGA-AA-3713-01 5 139947468 139947468 C T SLC35A4 Silent p.G238G 0.42 TCGA-AA-3713-01 5 140208962 140208962 A G PCDHA6 Missense_Mutation p.D429G 0.26 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-AA-3713-01 5 140229984 140229984 G A PCDHA9 Missense_Mutation p.R635H 0.27 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-AA-3713-01 5 140237240 140237240 C T PCDHA10 Missense_Mutation p.A536V 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-AA-3713-01 5 140263315 140263315 G A PCDHA13 Missense_Mutation p.A488T 0.27 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-AA-3713-01 5 140552457 140552457 T C PCDHB7 Missense_Mutation p.V14A 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.619) TCGA-AA-3713-01 5 140615329 140615329 C T PCDHB18 RNA 0.26 TCGA-AA-3713-01 5 140683296 140683296 C T SLC25A2 Missense_Mutation p.G46D 0.25 tolerated(0.09) possibly_damaging(0.864) TCGA-AA-3713-01 5 140736646 140736646 C T PCDHGA4 Missense_Mutation p.R627C 0.19 deleterious_low_confidence(0.02) benign(0.344) TCGA-AA-3713-01 5 140768680 140768680 G A PCDHGB4 Missense_Mutation p.R410H 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 5 140769224 140769224 G A PCDHGB4 Silent p.A591A 0.29 TCGA-AA-3713-01 5 140801929 140801930 - A PCDHGA11 Frame_Shift_Ins p.N380Kfs*10 0.22 TCGA-AA-3713-01 5 141026156 141026156 C - FCHSD1 Intron 0.26 TCGA-AA-3713-01 5 141336498 141336498 G T PCDH12 Missense_Mutation p.R307S 0.31 tolerated(0.18) benign(0.086) TCGA-AA-3713-01 5 14508201 14508201 C T TRIO Silent p.G2988G 0.22 TCGA-AA-3713-01 5 145515203 145515203 G A LARS Missense_Mutation p.L725F 0.31 deleterious(0) benign(0.156) TCGA-AA-3713-01 5 145872566 145872567 - A TCERG1 Frame_Shift_Ins p.M735Nfs*8 0.24 TCGA-AA-3713-01 5 146030217 146030217 G A PPP2R2B Missense_Mutation p.T176I 0.11 deleterious(0) possibly_damaging(0.878) TCGA-AA-3713-01 5 147261053 147261053 T G SCGB3A2 Missense_Mutation p.L34V 0.25 tolerated(1) benign(0.001) TCGA-AA-3713-01 5 148406368 148406368 A T SH3TC2 Intron 0.19 TCGA-AA-3713-01 5 148586579 148586579 G A ABLIM3 Missense_Mutation p.G153R 0.24 deleterious(0) probably_damaging(0.995) TCGA-AA-3713-01 5 148930466 148930466 C A CSNK1A1 Missense_Mutation p.R21L 0.35 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-AA-3713-01 5 149512473 149512473 C A PDGFRB Missense_Mutation p.G323C 0.25 deleterious(0.02) possibly_damaging(0.469) TCGA-AA-3713-01 5 150947024 150947024 T - FAT2 Frame_Shift_Del p.N490Mfs*36 0.26 TCGA-AA-3713-01 5 153406800 153406800 T A FAM114A2 Missense_Mutation p.D242V 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 5 154173700 154173700 T C LARP1 Silent p.G293G 0.16 TCGA-AA-3713-01 5 154250219 154250219 A T CNOT8 Splice_Site p.X104_splice 0.29 TCGA-AA-3713-01 5 156590055 156590055 G C FAM71B Nonsense_Mutation p.Y407* 0.21 TCGA-AA-3713-01 5 157102127 157102128 - A C5orf52 Frame_Shift_Ins p.T83Nfs*14 0.23 TCGA-AA-3713-01 5 168189626 168189626 G A SLIT3 Missense_Mutation p.R510C 0.30 deleterious(0) probably_damaging(0.991) TCGA-AA-3713-01 5 171481605 171481605 C T STK10 Missense_Mutation p.E874K 0.30 deleterious(0) possibly_damaging(0.458) TCGA-AA-3713-01 5 171517345 171517345 T - STK10 Frame_Shift_Del p.T526Pfs*15 0.11 TCGA-AA-3713-01 5 173531326 173531326 G T NSG2 Missense_Mutation p.E103D 0.28 tolerated(1) benign(0.009) TCGA-AA-3713-01 5 174870024 174870024 C T DRD1 Missense_Mutation p.A27T 0.22 deleterious(0) benign(0.064) TCGA-AA-3713-01 5 175782625 175782625 G A KIAA1191 Silent p.S52S 0.26 TCGA-AA-3713-01 5 175956624 175956624 G A RNF44 Missense_Mutation p.R346W 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-AA-3713-01 5 176304686 176304686 G A UNC5A Silent p.S539S 0.27 TCGA-AA-3713-01 5 176721107 176721107 G T NSD1 Missense_Mutation p.Q2246H 0.18 deleterious_low_confidence(0.01) benign(0.332) TCGA-AA-3713-01 5 176722543 176722543 A - NSD1 3'UTR 0.32 TCGA-AA-3713-01 5 176886165 176886165 G A DBN1 Missense_Mutation p.R356W 0.23 deleterious(0) possibly_damaging(0.847) TCGA-AA-3713-01 5 176893956 176893956 G A DBN1 Silent p.R223R 0.35 TCGA-AA-3713-01 5 178416001 178416001 C T GRM6 Missense_Mutation p.C430Y 0.24 deleterious(0.02) possibly_damaging(0.58) TCGA-AA-3713-01 5 179032892 179032892 G T RUFY1 Missense_Mutation p.M624I 0.26 tolerated(0.59) probably_damaging(0.942) TCGA-AA-3713-01 5 180030139 180030139 C T FLT4 3'UTR 0.42 TCGA-AA-3713-01 5 180661784 180661784 C A TRIM41 3'UTR 0.24 TCGA-AA-3713-01 5 192413 192413 C - LRRC14B Frame_Shift_Del p.T256Pfs*36 0.24 TCGA-AA-3713-01 5 24487771 24487771 G A CDH10 3'UTR 0.23 TCGA-AA-3713-01 5 24492972 24492973 - A CDH10 Frame_Shift_Ins p.S527Qfs*14 0.24 TCGA-AA-3713-01 5 32394554 32394554 G A ZFR Intron 0.38 TCGA-AA-3713-01 5 34845699 34845699 C T TTC23L Missense_Mutation p.A59V 0.27 tolerated(0.47) benign(0.006) TCGA-AA-3713-01 5 35774083 35774084 - A SPEF2 Frame_Shift_Ins p.I1348Nfs*12 0.24 TCGA-AA-3713-01 5 35904499 35904500 - T CAPSL 3'UTR 0.23 TCGA-AA-3713-01 5 37224808 37224808 T - C5orf42 Frame_Shift_Del p.T776Lfs*8 0.21 TCGA-AA-3713-01 5 37697839 37697839 T C WDR70 Missense_Mutation p.V392A 0.18 tolerated(0.58) benign(0.012) TCGA-AA-3713-01 5 428049 428049 C T AHRR Missense_Mutation p.A301V 0.32 tolerated(0.36) benign(0.072) TCGA-AA-3713-01 5 5200311 5200311 T C ADAMTS16 Silent p.P460P 0.25 TCGA-AA-3713-01 5 54721739 54721739 G A PPAP2A Silent p.S227S 0.21 TCGA-AA-3713-01 5 63256593 63256593 G A HTR1A Silent p.P318P 0.22 TCGA-AA-3713-01 5 66405981 66405981 A C MAST4 Missense_Mutation p.K471T 0.21 probably_damaging(0.984) TCGA-AA-3713-01 5 7867768 7867769 - T FASTKD3 Frame_Shift_Ins p.D144Gfs*3 0.27 TCGA-AA-3713-01 5 86659311 86659311 C A RASA1 Missense_Mutation p.L534I 0.29 deleterious(0.02) benign(0.388) TCGA-AA-3713-01 5 86690311 86690311 A - CCNH Intron 0.19 TCGA-AA-3713-01 5 92923672 92923672 C T NR2F1 Silent p.Y171Y 0.26 TCGA-AA-3713-01 5 94050575 94050575 C - MCTP1 Frame_Shift_Del p.G876Dfs*3 0.21 TCGA-AA-3713-01 5 96430694 96430694 G A LIX1 Missense_Mutation p.R203C 0.25 deleterious(0) probably_damaging(0.996) TCGA-AA-3713-01 5 98206409 98206409 T - CHD1 Frame_Shift_Del p.E1321Kfs*22 0.25 TCGA-AA-3713-01 5 98230370 98230370 C T CHD1 Silent p.T577T 0.24 TCGA-AA-3713-01 6 102376498 102376498 T - GRIK2 Frame_Shift_Del p.F694Sfs*16 0.22 TCGA-AA-3713-01 6 10796240 10796241 - T MAK Frame_Shift_Ins p.N378Kfs*5 0.28 TCGA-AA-3713-01 6 10830844 10830844 C T MAK Missense_Mutation p.G13D 0.05 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 6 112020818 112020819 - G FYN Intron 0.24 TCGA-AA-3713-01 6 117043442 117043442 G A KPNA5 Missense_Mutation p.E304K 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3713-01 6 117609650 117609650 C T ROS1 3'UTR 0.26 TCGA-AA-3713-01 6 118786435 118786435 C T CEP85L 3'UTR 0.13 TCGA-AA-3713-01 6 12123784 12123784 T C HIVEP1 Silent p.H1252H 0.22 TCGA-AA-3713-01 6 12123814 12123814 G A HIVEP1 Nonsense_Mutation p.W1262* 0.26 TCGA-AA-3713-01 6 123594126 123594126 A G TRDN Missense_Mutation p.V552A 0.21 tolerated_low_confidence(0.09) benign(0.01) TCGA-AA-3713-01 6 127837038 127837038 C - SOGA3 Frame_Shift_Del p.G241Afs*133 0.24 TCGA-AA-3713-01 6 132061425 132061425 A - ENPP3 Frame_Shift_Del p.N789Tfs*54 0.17 TCGA-AA-3713-01 6 132695977 132695977 A G MOXD1 Intron 0.27 TCGA-AA-3713-01 6 133118226 133118226 G - SLC18B1 Frame_Shift_Del p.W28Gfs*10 0.24 TCGA-AA-3713-01 6 145115051 145115052 - C UTRN Frame_Shift_Ins p.R3003Pfs*5 0.23 TCGA-AA-3713-01 6 149922849 149922849 G T KATNA1 Missense_Mutation p.L257I 0.29 deleterious(0.01) benign(0.418) TCGA-AA-3713-01 6 155619711 155619711 A C TFB1M Silent p.S98S 0.25 TCGA-AA-3713-01 6 1611073 1611073 G A FOXC1 Silent p.S131S 0.29 TCGA-AA-3713-01 6 170103899 170103899 G T C6orf120 3'UTR 0.21 TCGA-AA-3713-01 6 170594674 170594674 C - DLL1 Frame_Shift_Del p.G282Afs*8 0.27 TCGA-AA-3713-01 6 17826271 17826271 A - KIF13A Frame_Shift_Del p.F539Lfs*3 0.21 TCGA-AA-3713-01 6 18160160 18160160 G T KDM1B Missense_Mutation p.A12S 0.26 tolerated_low_confidence(0.37) benign(0.132) TCGA-AA-3713-01 6 18222307 18222307 A - KDM1B 3'UTR 0.16 TCGA-AA-3713-01 6 2685800 2685800 C T MYLK4 Missense_Mutation p.G118S 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 6 28228055 28228055 C T NKAPL Silent p.P302P 0.25 TCGA-AA-3713-01 6 2948934 2948934 C A SERPINB6 Splice_Site p.X244_splice 0.25 TCGA-AA-3713-01 6 30166518 30166518 G A TRIM26 Silent p.C121C 0.21 TCGA-AA-3713-01 6 31648082 31648082 T G LY6G5C Missense_Mutation p.Q23H 0.22 tolerated(0.12) benign(0.035) TCGA-AA-3713-01 6 31765402 31765402 A - LSM2 3'UTR 0.37 TCGA-AA-3713-01 6 31995114 31995114 C A C4B Silent p.A898A 0.53 TCGA-AA-3713-01 6 32052335 32052335 G A TNXB Silent p.D1100D 0.28 TCGA-AA-3713-01 6 32170147 32170147 C - NOTCH4 Frame_Shift_Del p.G1154Afs*150 0.09 TCGA-AA-3713-01 6 32546763 32546763 C T HLA-DRB1 3'UTR 0.25 TCGA-AA-3713-01 6 32905042 32905042 G A HLA-DMB Missense_Mutation p.L177F 0.25 tolerated(0.23) benign(0.146) TCGA-AA-3713-01 6 33179214 33179214 C - RING1 Frame_Shift_Del p.P247Qfs*38 0.20 TCGA-AA-3713-01 6 33283914 33283914 C A ZBTB22 Missense_Mutation p.E260D 0.19 tolerated(0.18) benign(0.332) TCGA-AA-3713-01 6 33651061 33651061 G A ITPR3 Missense_Mutation p.A1559T 0.25 tolerated(0.58) benign(0.003) TCGA-AA-3713-01 6 348896 348896 G T DUSP22 Intron 0.13 TCGA-AA-3713-01 6 36169261 36169261 C T BRPF3 Missense_Mutation p.P388S 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 6 37617941 37617941 C T MDGA1 Missense_Mutation p.R518H 0.29 deleterious(0.05) possibly_damaging(0.883) TCGA-AA-3713-01 6 3851314 3851314 T - FAM50B 3'UTR 0.24 TCGA-AA-3713-01 6 39282542 39282542 C T KCNK16 3'Flank 0.38 TCGA-AA-3713-01 6 39563884 39563884 G A KIF6 Silent p.G264G 0.25 TCGA-AA-3713-01 6 42906311 42906311 C A CNPY3 Missense_Mutation p.L207M 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3713-01 6 43030884 43030884 C T KLC4 Missense_Mutation p.S181L 0.27 tolerated(0.17) benign(0.004) TCGA-AA-3713-01 6 44102401 44102401 G A TMEM63B Missense_Mutation p.R27H 0.27 tolerated(0.27) probably_damaging(0.998) TCGA-AA-3713-01 6 44140983 44140983 G - CAPN11 Frame_Shift_Del p.G232Afs*56 0.24 TCGA-AA-3713-01 6 44371656 44371656 A - CDC5L Frame_Shift_Del p.K219Sfs*24 0.25 TCGA-AA-3713-01 6 4735041 4735041 G A CDYL Missense_Mutation p.S50N 0.30 deleterious_low_confidence(0.03) benign(0) TCGA-AA-3713-01 6 52869991 52869991 G A ICK Missense_Mutation p.H619Y 0.29 deleterious(0) probably_damaging(0.99) TCGA-AA-3713-01 6 62407135 62407135 C A KHDRBS2 Missense_Mutation p.G306V 0.30 deleterious(0) possibly_damaging(0.843) TCGA-AA-3713-01 6 72006380 72006381 - A OGFRL1 Frame_Shift_Ins p.T187Nfs*6 0.27 TCGA-AA-3713-01 6 7230522 7230522 C T RREB1 Silent p.I730I 0.22 TCGA-AA-3713-01 6 72806776 72806776 T C RIMS1 Missense_Mutation p.F124L 0.17 deleterious(0) probably_damaging(0.958) TCGA-AA-3713-01 6 73821037 73821037 C A KCNQ5 Missense_Mutation p.L346I 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 6 7583050 7583050 G A DSP Missense_Mutation p.R1852H 0.15 benign(0.009) TCGA-AA-3713-01 6 78172433 78172433 G A HTR1B Missense_Mutation p.R230C 0.26 deleterious(0) probably_damaging(0.993) TCGA-AA-3713-01 6 7891936 7891936 C T TXNDC5 Missense_Mutation p.C217Y 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 6 80626118 80626118 A T ELOVL4 3'UTR 0.29 TCGA-AA-3713-01 6 84862599 84862600 - T KIAA1009 Frame_Shift_Ins p.R1099Efs*46 0.22 TCGA-AA-3713-01 6 87725698 87725698 A G HTR1E Missense_Mutation p.R216G 0.14 deleterious(0.03) probably_damaging(1) TCGA-AA-3713-01 6 87994650 87994650 G A GJB7 5'UTR 0.31 TCGA-AA-3713-01 6 89890170 89890170 C G GABRR1 Silent p.T329T 0.23 TCGA-AA-3713-01 6 96660412 96660412 A - FUT9 3'UTR 0.26 TCGA-AA-3713-01 6 96661644 96661645 - A FUT9 3'UTR 0.20 TCGA-AA-3713-01 6 97561984 97561984 C A KLHL32 Missense_Mutation p.A318D 0.28 tolerated(0.62) benign(0.312) TCGA-AA-3713-01 6 99285318 99285318 A - POU3F2 3'UTR 0.19 TCGA-AA-3713-01 7 100212641 100212641 C T MOSPD3 Silent p.A221A 0.24 TCGA-AA-3713-01 7 100349635 100349635 C A ZAN Missense_Mutation p.P636H 0.26 possibly_damaging(0.488) TCGA-AA-3713-01 7 102389525 102389526 - T FAM185A 5'Flank 0.27 TCGA-AA-3713-01 7 102962421 102962421 T - DNAJC2 Frame_Shift_Del p.A348Pfs*29 0.22 TCGA-AA-3713-01 7 103207055 103207055 C T RELN Silent p.P1580P 0.22 TCGA-AA-3713-01 7 103252066 103252066 C T RELN Missense_Mutation p.V963I 0.29 tolerated(0.07) benign(0.029) TCGA-AA-3713-01 7 103252216 103252216 G A RELN Missense_Mutation p.R913C 0.23 deleterious(0) probably_damaging(0.915) TCGA-AA-3713-01 7 106799959 106799959 G A PRKAR2B Missense_Mutation p.A397T 0.23 tolerated(0.72) benign(0.003) TCGA-AA-3713-01 7 107114613 107114613 T A GPR22 Nonsense_Mutation p.Y36* 0.31 TCGA-AA-3713-01 7 107564774 107564774 T - LAMB1 Frame_Shift_Del p.T1709Lfs*22 0.20 TCGA-AA-3713-01 7 112423767 112423767 C T TMEM168 Missense_Mutation p.A372T 0.28 deleterious(0.01) benign(0.027) TCGA-AA-3713-01 7 1133065 1133065 G A GPER1 3'UTR 0.33 TCGA-AA-3713-01 7 12675760 12675760 G T SCIN Missense_Mutation p.Q470H 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-AA-3713-01 7 130021607 130021607 C T CPA1 Missense_Mutation p.S95L 0.25 tolerated(0.26) benign(0.009) TCGA-AA-3713-01 7 131844303 131844303 T C PLXNA4 Missense_Mutation p.E1530G 0.31 deleterious(0) possibly_damaging(0.809) TCGA-AA-3713-01 7 133863332 133863332 C T LRGUK Silent p.S395S 0.38 TCGA-AA-3713-01 7 134252979 134252979 G A AKR1B15 Missense_Mutation p.A74T 0.25 deleterious(0.04) possibly_damaging(0.599) TCGA-AA-3713-01 7 134893669 134893669 A C WDR91 Missense_Mutation p.F129V 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 7 135421850 135421850 G A FAM180A Silent p.Y58Y 0.41 TCGA-AA-3713-01 7 136699809 136699809 C T CHRM2 Missense_Mutation p.A66V 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.19 deleterious(0) probably_damaging(0.967) TCGA-AA-3713-01 7 141408797 141408797 T - WEE2 Frame_Shift_Del p.L81* 0.15 TCGA-AA-3713-01 7 141758034 141758034 G T MGAM Missense_Mutation p.W1242L 0.31 deleterious(0.01) probably_damaging(1) TCGA-AA-3713-01 7 143748276 143748276 C - OR2A5 Frame_Shift_Del p.K263Sfs*23 0.25 TCGA-AA-3713-01 7 144015579 144015579 G A OR2A1 Missense_Mutation p.R121H 0.11 deleterious(0.02) possibly_damaging(0.637) TCGA-AA-3713-01 7 144096190 144096190 G - NOBOX Frame_Shift_Del p.P441Hfs*25 0.29 TCGA-AA-3713-01 7 147926823 147926824 - C CNTNAP2 Frame_Shift_Ins p.H1113Pfs*52 0.28 TCGA-AA-3713-01 7 148951212 148951212 C T ZNF212 Silent p.A398A 0.25 TCGA-AA-3713-01 7 149129635 149129635 G A ZNF777 Silent p.C576C 0.29 TCGA-AA-3713-01 7 150721218 150721218 G - ATG9B Frame_Shift_Del p.P98Qfs*8 0.40 TCGA-AA-3713-01 7 151791543 151791543 C T GALNT11 Silent p.D77D 0.31 TCGA-AA-3713-01 7 151817945 151817945 G A GALNT11 Silent p.L529L 0.08 TCGA-AA-3713-01 7 154679421 154679421 G A DPP6 Missense_Mutation p.G761R 0.23 tolerated(0.26) possibly_damaging(0.695) TCGA-AA-3713-01 7 158536278 158536278 C T ESYT2 Missense_Mutation p.R606H 0.34 tolerated(0.05) benign(0.134) TCGA-AA-3713-01 7 20371449 20371450 - T ITGB8 Frame_Shift_Ins p.T10Yfs*34 0.25 TCGA-AA-3713-01 7 22478141 22478141 T - STEAP1B Frame_Shift_Del p.D333Tfs*5 0.11 TCGA-AA-3713-01 7 2473276 2473276 C T CHST12 Silent p.I334I 0.38 TCGA-AA-3713-01 7 27135199 27135199 G A HOXA1 Silent p.Y111Y 0.26 TCGA-AA-3713-01 7 27194562 27194564 TCC - HOXA7 In_Frame_Del p.E219del 0.27 TCGA-AA-3713-01 7 29727204 29727204 G A DPY19L2P3 Intron 0.38 TCGA-AA-3713-01 7 30705196 30705196 G A CRHR2 Silent p.C152C 0.40 TCGA-AA-3713-01 7 38810820 38810820 T - VPS41 Frame_Shift_Del p.N388Ifs*15 0.31 TCGA-AA-3713-01 7 44146316 44146316 C T AEBP1 Missense_Mutation p.P142L 0.22 deleterious_low_confidence(0) unknown(0) TCGA-AA-3713-01 7 44156754 44156754 C T POLD2 Missense_Mutation p.A187T 0.25 tolerated(0.39) benign(0.001) TCGA-AA-3713-01 7 44715671 44715671 C T OGDH Missense_Mutation p.L377F 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 7 47408079 47408079 C T TNS3 Missense_Mutation p.A722T 0.20 tolerated(1) benign(0.001) TCGA-AA-3713-01 7 47969116 47969116 C T PKD1L1 Missense_Mutation p.G249S 0.26 tolerated(0.26) benign(0.001) TCGA-AA-3713-01 7 48015249 48015249 C A HUS1 Missense_Mutation p.K167N 0.21 deleterious(0) possibly_damaging(0.906) TCGA-AA-3713-01 7 48099950 48099950 T - C7orf57 3'UTR 0.24 TCGA-AA-3713-01 7 6085740 6085740 T - EIF2AK1 Frame_Shift_Del p.I198Sfs*2 0.25 TCGA-AA-3713-01 7 64389238 64389238 A G ZNF273 Missense_Mutation p.E511G 0.11 deleterious(0.03) probably_damaging(0.991) TCGA-AA-3713-01 7 73634106 73634106 G A LAT2 Missense_Mutation p.R56Q 0.25 tolerated(0.21) benign(0.013) TCGA-AA-3713-01 7 73790405 73790405 G A CLIP2 Silent p.R558R 0.31 TCGA-AA-3713-01 7 7646816 7646816 T C MIOS 3'UTR 0.43 TCGA-AA-3713-01 7 80430091 80430091 C T SEMA3C Missense_Mutation p.G323D 0.25 deleterious(0) probably_damaging(0.993) TCGA-AA-3713-01 7 82583480 82583482 AAC - PCLO In_Frame_Del p.V2263del 0.15 TCGA-AA-3713-01 7 86541455 86541455 C T KIAA1324L Missense_Mutation p.G701D 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3713-01 7 86547861 86547861 C T KIAA1324L Splice_Site p.X497_splice 0.24 TCGA-AA-3713-01 7 92760745 92760745 T C SAMD9L Missense_Mutation p.K1514E 0.28 tolerated(0.15) benign(0.045) TCGA-AA-3713-01 7 94056584 94056584 C T COL1A2 Missense_Mutation p.P1082S 0.16 unknown(0) TCGA-AA-3713-01 7 94297748 94297748 A - PEG10 3'UTR 0.22 TCGA-AA-3713-01 8 100779200 100779200 T C VPS13B Splice_Site p.X2441_splice 0.22 TCGA-AA-3713-01 8 100796685 100796685 G A VPS13B Missense_Mutation p.R2666H 0.23 deleterious(0) possibly_damaging(0.812) TCGA-AA-3713-01 8 100974664 100974664 C T RGS22 3'UTR 0.18 TCGA-AA-3713-01 8 100977567 100977567 C T RGS22 Missense_Mutation p.R1204Q 0.22 tolerated(0.12) benign(0.024) TCGA-AA-3713-01 8 103359262 103359262 C T UBR5 Missense_Mutation p.A149T 0.18 tolerated(0.9) benign(0) TCGA-AA-3713-01 8 103372382 103372382 C T UBR5 Silent p.T101T 0.21 TCGA-AA-3713-01 8 109796676 109796676 C T TMEM74 Missense_Mutation p.E218K 0.22 deleterious(0.03) benign(0.049) TCGA-AA-3713-01 8 110980234 110980234 T G KCNV1 3'UTR 0.17 TCGA-AA-3713-01 8 113353855 113353855 C T CSMD3 Missense_Mutation p.R2168Q 0.20 tolerated(0.23) benign(0.166) TCGA-AA-3713-01 8 113988326 113988326 T C CSMD3 Missense_Mutation p.N361S 0.23 tolerated(0.75) benign(0) TCGA-AA-3713-01 8 116616389 116616389 T C TRPS1 Missense_Mutation p.S603G 0.22 tolerated_low_confidence(0.1) benign(0.034) TCGA-AA-3713-01 8 118159336 118159336 G A SLC30A8 Nonsense_Mutation p.W72* 0.16 TCGA-AA-3713-01 8 124413385 124413385 A G ATAD2 5'Flank 0.18 TCGA-AA-3713-01 8 125989366 125989366 A G ZNF572 Missense_Mutation p.S286G 0.17 tolerated(0.22) benign(0.01) TCGA-AA-3713-01 8 131179788 131179788 C G ASAP1 Missense_Mutation p.Q301H 0.22 deleterious(0.03) benign(0.121) TCGA-AA-3713-01 8 133858051 133858052 - G PHF20L1 Frame_Shift_Ins p.E981Gfs*15 0.16 TCGA-AA-3713-01 8 134145764 134145764 C - TG Frame_Shift_Del p.W2685Gfs*26 0.18 TCGA-AA-3713-01 8 141572581 141572581 G A AGO2 Silent p.D163D 0.23 TCGA-AA-3713-01 8 143310865 143310865 C T TSNARE1 Missense_Mutation p.A508T 0.14 tolerated(0.31) benign(0.006) TCGA-AA-3713-01 8 144662301 144662301 C - EEF1D Frame_Shift_Del p.A596Lfs*55 0.22 TCGA-AA-3713-01 8 144940276 144940276 G A EPPK1 Silent p.D2382D 0.04 TCGA-AA-3713-01 8 145095788 145095788 C A SPATC1 Silent p.P362P 0.25 TCGA-AA-3713-01 8 145113157 145113157 C T OPLAH Missense_Mutation p.G312S 0.44 deleterious(0.01) probably_damaging(1) TCGA-AA-3713-01 8 145268010 145268010 G A MROH1 Intron 0.18 TCGA-AA-3713-01 8 1497559 1497559 G A DLGAP2 Missense_Mutation p.V234M 0.25 tolerated(0.27) benign(0.027) TCGA-AA-3713-01 8 16963070 16963070 C T MICU3 Missense_Mutation p.R412C 0.20 tolerated(0.05) possibly_damaging(0.772) TCGA-AA-3713-01 8 17157406 17157406 G A MTMR7 Missense_Mutation p.R650W 0.17 deleterious_low_confidence(0.02) benign(0.249) TCGA-AA-3713-01 8 19809307 19809307 C T LPL Missense_Mutation p.P93S 0.21 tolerated(0.4) possibly_damaging(0.759) TCGA-AA-3713-01 8 20072413 20072413 G A ATP6V1B2 Missense_Mutation p.A338T 0.19 deleterious(0) probably_damaging(0.994) TCGA-AA-3713-01 8 21926529 21926529 C A DMTN Silent p.R84R 0.25 TCGA-AA-3713-01 8 22105432 22105432 A G POLR3D Missense_Mutation p.E91G 0.22 tolerated(0.42) benign(0.001) TCGA-AA-3713-01 8 22458469 22458469 G A C8orf58 Missense_Mutation p.A39T 0.19 tolerated(0.39) benign(0.047) TCGA-AA-3713-01 8 22973117 22973117 G A TNFRSF10C Missense_Mutation p.R126Q 0.25 tolerated(0.95) benign(0.274) TCGA-AA-3713-01 8 24811019 24811019 C T CTD-2168K21.2 5'Flank 0.13 TCGA-AA-3713-01 8 25230130 25230130 G A DOCK5 Missense_Mutation p.A1194T 0.24 tolerated(0.07) benign(0.012) TCGA-AA-3713-01 8 26627715 26627715 G A ADRA1A Intron 0.22 TCGA-AA-3713-01 8 27311779 27311779 C - PTK2B Frame_Shift_Del p.E904Rfs*7 0.21 TCGA-AA-3713-01 8 27925201 27925201 T A NUGGC Nonsense_Mutation p.R181* 0.23 TCGA-AA-3713-01 8 30361947 30361947 G T RBPMS Nonsense_Mutation p.E131* 0.21 TCGA-AA-3713-01 8 30700481 30700481 A T TEX15 Nonsense_Mutation p.L2018* 0.23 TCGA-AA-3713-01 8 30915930 30915931 - T WRN 5'UTR 0.27 TCGA-AA-3713-01 8 30973983 30973983 C T WRN Missense_Mutation p.A796V 0.20 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 8 32505516 32505516 G A NRG1 Intron 0.21 TCGA-AA-3713-01 8 38027409 38027409 C A LSM1 Nonsense_Mutation p.E48* 0.40 TCGA-AA-3713-01 8 38677783 38677783 C T TACC1 Missense_Mutation p.L341F 0.17 tolerated(0.54) benign(0.009) TCGA-AA-3713-01 8 38827319 38827322 GGGA - PLEKHA2 3'UTR 0.17 TCGA-AA-3713-01 8 39495105 39495105 G T ADAM18 Missense_Mutation p.W237L 0.22 deleterious(0) probably_damaging(0.94) TCGA-AA-3713-01 8 41566383 41566383 C T ANK1 Silent p.T670T 0.15 TCGA-AA-3713-01 8 42286315 42286315 G A SLC20A2 Silent p.A585A 0.21 TCGA-AA-3713-01 8 442529 442529 G A TDRP Missense_Mutation p.S143L 0.20 deleterious(0) benign(0.395) TCGA-AA-3713-01 8 53570077 53570077 G A RB1CC1 Missense_Mutation p.A771V 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3713-01 8 57358313 57358313 G A PENK Intron 0.17 TCGA-AA-3713-01 8 61763050 61763050 A C CHD7 Splice_Site p.X1802_splice 0.22 TCGA-AA-3713-01 8 623865 623865 T - ERICH1 Frame_Shift_Del p.R163Gfs*3 0.16 TCGA-AA-3713-01 8 67484815 67484817 TAG - MYBL1 In_Frame_Del p.T543del 0.17 TCGA-AA-3713-01 8 67578928 67578928 G A VCPIP1 Missense_Mutation p.T89I 0.23 deleterious(0) probably_damaging(0.979) TCGA-AA-3713-01 8 6783431 6783431 C A DEFA6 Missense_Mutation p.G43W 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3713-01 8 68130017 68130017 G A ARFGEF1 Missense_Mutation p.A1538V 0.24 tolerated(0.36) benign(0.002) TCGA-AA-3713-01 8 69129902 69129902 C T PREX2 Silent p.H1552H 0.14 TCGA-AA-3713-01 8 71068993 71068993 G A NCOA2 Missense_Mutation p.A536V 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 8 71499350 71499350 T G TRAM1 Missense_Mutation p.Y211S 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-3713-01 8 71570094 71570095 - T LACTB2 Frame_Shift_Ins p.L104Tfs*28 0.19 TCGA-AA-3713-01 8 77617337 77617337 A - ZFHX4 Frame_Shift_Del p.K340Nfs*15 0.21 TCGA-AA-3713-01 8 81555314 81555314 C T ZNF704 Silent p.A361A 0.21 TCGA-AA-3713-01 8 81897248 81897248 G T PAG1 Silent p.L213L 0.21 TCGA-AA-3713-01 8 86049829 86049829 C T LRRCC1 Silent p.D820D 0.14 TCGA-AA-3713-01 8 8747632 8747632 G T MFHAS1 Silent p.T979T 0.23 TCGA-AA-3713-01 8 89209417 89209417 A T MMP16 Missense_Mutation p.M84K 0.19 deleterious(0) benign(0.079) TCGA-AA-3713-01 8 90965666 90965666 T - NBN Frame_Shift_Del p.R551Gfs*8 0.21 TCGA-AA-3713-01 8 90982711 90982713 TTC - NBN In_Frame_Del p.E259del 0.18 TCGA-AA-3713-01 8 99440384 99440384 C T KCNS2 Silent p.C59C 0.25 TCGA-AA-3713-01 9 100071780 100071780 A G CCDC180 Missense_Mutation p.M96V 0.28 tolerated(0.25) benign(0.093) TCGA-AA-3713-01 9 101797692 101797692 G A COL15A1 Missense_Mutation p.A761T 0.22 tolerated(0.29) benign(0.08) TCGA-AA-3713-01 9 103004913 103004913 C T INVS Silent p.D286D 0.16 TCGA-AA-3713-01 9 103059317 103059317 C T INVS Silent p.L969L 0.20 TCGA-AA-3713-01 9 105757679 105757679 T C CYLC2 Missense_Mutation p.F6S 0.24 deleterious(0.02) benign(0.29) TCGA-AA-3713-01 9 107593986 107593986 G A ABCA1 Silent p.G544G 0.37 TCGA-AA-3713-01 9 116053297 116053297 G A PRPF4 Splice_Site p.X459_splice 0.39 TCGA-AA-3713-01 9 116353678 116353678 G A RGS3 Splice_Site p.X1027_splice 0.21 TCGA-AA-3713-01 9 117165211 117165211 G A DFNB31 Silent p.G849G 0.28 TCGA-AA-3713-01 9 117568360 117568360 G A TNFSF15 5'UTR 0.29 TCGA-AA-3713-01 9 117808701 117808701 T C TNC Missense_Mutation p.I1705V 0.23 tolerated(1) benign(0.001) TCGA-AA-3713-01 9 118164449 118164449 A - DEC1 3'UTR 0.16 TCGA-AA-3713-01 9 121971037 121971037 G A BRINP1 Missense_Mutation p.R369C 0.25 deleterious(0.02) benign(0.02) TCGA-AA-3713-01 9 121971166 121971166 C T BRINP1 Missense_Mutation p.G326R 0.24 deleterious(0.01) benign(0.277) TCGA-AA-3713-01 9 129598011 129598011 T - ZBTB43 3'UTR 0.40 TCGA-AA-3713-01 9 130495628 130495628 C - TOR2A Intron 0.31 TCGA-AA-3713-01 9 131029792 131029792 G A GOLGA2 Missense_Mutation p.A142V 0.10 deleterious(0.02) benign(0.062) TCGA-AA-3713-01 9 131036196 131036196 T C GOLGA2 Missense_Mutation p.K47R 0.30 deleterious(0) probably_damaging(0.979) TCGA-AA-3713-01 9 131395517 131395517 C G SPTAN1 Missense_Mutation p.C2446W 0.25 deleterious(0) benign(0.092) TCGA-AA-3713-01 9 131873261 131873261 A G PPP2R4 5'Flank 0.25 TCGA-AA-3713-01 9 131899914 131899914 C T PPP2R4 Silent p.A243A 0.26 TCGA-AA-3713-01 9 132571290 132571290 G A TOR1B Missense_Mutation p.G250R 0.28 tolerated(0.06) possibly_damaging(0.473) TCGA-AA-3713-01 9 132591537 132591539 TCT - C9orf78 In_Frame_Del p.E242del 0.29 TCGA-AA-3713-01 9 133760743 133760743 C T ABL1 Silent p.I1041I 0.17 TCGA-AA-3713-01 9 135947053 135947053 G C CEL Missense_Mutation p.A725P 0.28 deleterious_low_confidence(0.01) benign(0.001) TCGA-AA-3713-01 9 136227277 136227277 C T SURF2 Silent p.T218T 0.38 TCGA-AA-3713-01 9 136508639 136508639 C T DBH Silent p.C283C 0.23 TCGA-AA-3713-01 9 136508681 136508681 C T DBH Silent p.H297H 0.34 TCGA-AA-3713-01 9 138376740 138376740 C T PPP1R26 Silent p.S128S 0.33 TCGA-AA-3713-01 9 138660695 138660695 C T KCNT1 Silent p.R474R 0.30 TCGA-AA-3713-01 9 138707774 138707774 G A CAMSAP1 Missense_Mutation p.S1450L 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 9 139265896 139265896 G T CARD9 Missense_Mutation p.L68M 0.33 deleterious(0) probably_damaging(0.996) TCGA-AA-3713-01 9 139687317 139687317 G A TMEM141 3'UTR 0.20 TCGA-AA-3713-01 9 139935416 139935416 G A NPDC1 Missense_Mutation p.R136W 0.38 tolerated(0.13) benign(0.016) TCGA-AA-3713-01 9 140444801 140444801 A - PNPLA7 5'UTR 0.18 TCGA-AA-3713-01 9 140952582 140952582 C T CACNA1B Silent p.Y1396Y 0.25 TCGA-AA-3713-01 9 18474180 18474180 C T ADAMTSL1 5'UTR 0.21 TCGA-AA-3713-01 9 18829888 18829888 G A ADAMTSL1 Missense_Mutation p.A1388T 0.25 tolerated(0.39) benign(0.002) TCGA-AA-3713-01 9 19376648 19376648 A G RPS6 Silent p.G166G 0.27 TCGA-AA-3713-01 9 19409140 19409140 T G ACER2 Missense_Mutation p.C20G 0.26 deleterious(0) probably_damaging(0.973) TCGA-AA-3713-01 9 19786498 19786498 C T SLC24A2 Missense_Mutation p.D123N 0.22 deleterious(0) possibly_damaging(0.566) TCGA-AA-3713-01 9 2115831 2115831 G A SMARCA2 Missense_Mutation p.A1156T 0.27 possibly_damaging(0.787) TCGA-AA-3713-01 9 21854770 21854770 C A MTAP Silent p.T197T 0.31 TCGA-AA-3713-01 9 21967364 21967364 C A C9orf53 Silent p.R56R 0.09 TCGA-AA-3713-01 9 27197439 27197439 A - TEK Frame_Shift_Del p.S586Vfs*12 0.20 TCGA-AA-3713-01 9 32787138 32787138 A G TMEM215 3'UTR 0.32 TCGA-AA-3713-01 9 33303192 33303192 G A NFX1 Missense_Mutation p.G399D 0.12 tolerated(0.09) benign(0.025) TCGA-AA-3713-01 9 34661875 34661875 A C IL11RA 3'UTR 0.22 TCGA-AA-3713-01 9 35105340 35105340 G T FAM214B Missense_Mutation p.L499M 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 9 35396902 35396902 C T UNC13B Missense_Mutation p.R1085C 0.20 deleterious(0) benign(0.209) TCGA-AA-3713-01 9 35869831 35869831 C T OR13J1 Missense_Mutation p.G190S 0.33 tolerated(0.31) benign(0.065) TCGA-AA-3713-01 9 35957425 35957425 G A OR2S2 Missense_Mutation p.T224I 0.33 tolerated(0.08) benign(0.012) TCGA-AA-3713-01 9 37432008 37432008 C T GRHPR Silent p.G246G 0.21 TCGA-AA-3713-01 9 37955991 37955991 C T SHB Missense_Mutation p.R372H 0.32 tolerated(0.07) probably_damaging(0.983) TCGA-AA-3713-01 9 40773950 40773950 C T ZNF658 Missense_Mutation p.C442Y 0.18 deleterious(0.04) possibly_damaging(0.694) TCGA-AA-3713-01 9 42368553 42368553 G A ANKRD20A2 Missense_Mutation p.A47T 0.11 deleterious(0.04) possibly_damaging(0.798) TCGA-AA-3713-01 9 4583078 4583078 C - SLC1A1 Frame_Shift_Del p.Q413Rfs*5 0.25 TCGA-AA-3713-01 9 69403162 69403162 A G ANKRD20A4 Silent p.S284S 0.22 TCGA-AA-3713-01 9 71866197 71866197 G T TJP2 Missense_Mutation p.G1111C 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3713-01 9 79120658 79120658 T A GCNT1 3'UTR 0.21 TCGA-AA-3713-01 9 79933313 79933314 - A VPS13A Frame_Shift_Ins p.I1709Nfs*6 0.23 TCGA-AA-3713-01 9 82322069 82322069 G A TLE4 Intron 0.09 TCGA-AA-3713-01 9 91262534 91262534 T - RP13-60M5.2 RNA 0.24 TCGA-AA-3713-01 9 91994510 91994511 - A SEMA4D Frame_Shift_Ins p.K567Qfs*65 0.21 TCGA-AA-3713-01 9 95285103 95285104 - A ECM2 Frame_Shift_Ins p.Q16Sfs*3 0.21 TCGA-AA-3713-01 9 97203278 97203278 C T HIATL1 Missense_Mutation p.A136V 0.24 tolerated(0.12) benign(0.034) TCGA-AA-3713-01 9 98240363 98240363 G A PTCH1 Missense_Mutation p.R441C 0.24 deleterious(0) probably_damaging(0.978) TCGA-AA-3713-01 X 101912373 101912373 G A GPRASP1 Missense_Mutation p.A1178T 0.62 deleterious(0.05) possibly_damaging(0.775) TCGA-AA-3713-01 X 102192384 102192384 G - RAB40AL Frame_Shift_Del p.G48Efs*16 0.46 TCGA-AA-3713-01 X 107977803 107977803 C - IRS4 Frame_Shift_Del p.G591Afs*20 0.49 TCGA-AA-3713-01 X 110988002 110988002 T A ALG13 Silent p.P934P 0.38 TCGA-AA-3713-01 X 110988005 110988005 T A ALG13 Silent p.P935P 0.20 TCGA-AA-3713-01 X 113997745 113997745 C T HTR2C Intron 0.51 TCGA-AA-3713-01 X 11782016 11782016 A T MSL3 Missense_Mutation p.K289N 0.51 deleterious(0.03) probably_damaging(0.976) TCGA-AA-3713-01 X 12157056 12157056 G A FRMPD4 5'UTR 0.59 TCGA-AA-3713-01 X 123518690 123518690 G A TENM1 Missense_Mutation p.R2031C 0.54 deleterious(0) probably_damaging(0.982) TCGA-AA-3713-01 X 124097562 124097562 T C TENM1 Missense_Mutation p.K14R 0.53 tolerated_low_confidence(0.34) benign(0.023) TCGA-AA-3713-01 X 125298899 125298899 G A DCAF12L2 Missense_Mutation p.R337C 0.51 tolerated(0.18) benign(0.003) TCGA-AA-3713-01 X 125686197 125686197 C T DCAF12L1 Missense_Mutation p.R132H 0.56 tolerated(0.17) benign(0.041) TCGA-AA-3713-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.48 TCGA-AA-3713-01 X 13337915 13337915 T C ATXN3L Missense_Mutation p.R47G 0.56 deleterious(0.01) benign(0.05) TCGA-AA-3713-01 X 134992620 134992620 C T SAGE1 Silent p.S637S 0.59 TCGA-AA-3713-01 X 135572571 135572571 C A BRS3 Silent p.S238S 0.44 TCGA-AA-3713-01 X 135741537 135741537 G T CD40LG Missense_Mutation p.G250V 0.64 deleterious(0) possibly_damaging(0.821) TCGA-AA-3713-01 X 138697052 138697052 A - MCF2 Frame_Shift_Del p.S511Hfs*32 0.37 TCGA-AA-3713-01 X 142717240 142717240 G A SLITRK4 Missense_Mutation p.T562M 0.54 deleterious(0.02) possibly_damaging(0.791) TCGA-AA-3713-01 X 147733536 147733536 C T AFF2 Missense_Mutation p.R22C 0.45 deleterious(0) probably_damaging(0.997) TCGA-AA-3713-01 X 149013205 149013205 G A MAGEA8 Silent p.V53V 0.51 TCGA-AA-3713-01 X 149639325 149639327 CAG - MAMLD1 In_Frame_Del p.Q477del 0.42 TCGA-AA-3713-01 X 153278805 153278805 G - IRAK1 Frame_Shift_Del p.P540Lfs*53 0.42 TCGA-AA-3713-01 X 153689700 153689700 G A PLXNA3 Missense_Mutation p.G286S 0.54 deleterious(0.03) possibly_damaging(0.847) TCGA-AA-3713-01 X 16170715 16170715 G A GRPR Missense_Mutation p.V368M 0.34 tolerated(0.4) benign(0.002) TCGA-AA-3713-01 X 299575 299575 T C PPP2R3B Missense_Mutation p.T470A 0.34 tolerated(0.09) benign(0.029) TCGA-AA-3713-01 X 41077661 41077661 G T USP9X Missense_Mutation p.K2082N 0.52 tolerated(0.11) probably_damaging(0.977) TCGA-AA-3713-01 X 47102103 47102103 C T USP11 Missense_Mutation p.R566C 0.51 deleterious(0) probably_damaging(1) TCGA-AA-3713-01 X 53432459 53432459 C T SMC1A Missense_Mutation p.R626H 0.59 deleterious(0.05) probably_damaging(0.981) TCGA-AA-3713-01 X 53574943 53574943 T C HUWE1 Missense_Mutation p.I3443V 0.45 benign(0.031) TCGA-AA-3713-01 X 53603978 53603978 T C HUWE1 Silent p.V1922V 0.05 TCGA-AA-3713-01 X 54785157 54785157 C T ITIH6 Silent p.R450R 0.58 TCGA-AA-3713-01 X 57621251 57621251 C - ZXDB 3'UTR 0.36 TCGA-AA-3713-01 X 5810729 5810729 A C NLGN4X 3'UTR 0.44 TCGA-AA-3713-01 X 67943631 67943631 A T STARD8 Missense_Mutation p.H988L 0.62 deleterious(0.03) benign(0.07) TCGA-AA-3713-01 X 69269696 69269696 A G AWAT2 Splice_Site p.X29_splice 0.54 TCGA-AA-3713-01 X 69460189 69460189 G T AWAT1 3'UTR 0.44 TCGA-AA-3713-01 X 69549268 69549268 C T KIF4A Silent p.N264N 0.47 TCGA-AA-3713-01 X 71349809 71349809 A G RGAG4 Missense_Mutation p.S528P 0.50 deleterious_low_confidence(0) unknown(0) TCGA-AA-3713-01 X 75004573 75004573 G A MAGEE2 Missense_Mutation p.T105M 0.52 deleterious(0.02) benign(0.258) TCGA-AA-3713-01 X 78012469 78012469 G A LPAR4 3'UTR 0.49 TCGA-AA-3713-01 X 92965993 92965993 T - FAM133A 3'UTR 0.46 TCGA-AA-3947-01 10 100017908 100017908 C T LOXL4 Missense_Mutation p.R312H 0.48 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 10 100995443 100995443 G T HPSE2 Silent p.S39S 0.06 TCGA-AA-3947-01 10 102265160 102265160 T - SEC31B Frame_Shift_Del p.K379Nfs*40 0.29 TCGA-AA-3947-01 10 103292173 103292173 G A BTRC Missense_Mutation p.R321Q 0.39 deleterious(0) probably_damaging(0.989) TCGA-AA-3947-01 10 103868029 103868029 C T LDB1 Missense_Mutation p.E353K 0.31 deleterious(0.02) probably_damaging(0.955) TCGA-AA-3947-01 10 105200305 105200305 C T PDCD11 Silent p.G1469G 0.10 TCGA-AA-3947-01 10 105218519 105218519 G T CALHM1 5'UTR 0.17 TCGA-AA-3947-01 10 105232975 105232975 C T CALHM3 Missense_Mutation p.V344M 0.33 deleterious_low_confidence(0) benign(0.267) TCGA-AA-3947-01 10 105990460 105990460 G A WDR96 Silent p.G69G 0.19 TCGA-AA-3947-01 10 111893230 111893230 G A ADD3 Missense_Mutation p.E659K 0.36 deleterious(0.03) probably_damaging(0.995) TCGA-AA-3947-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.43 TCGA-AA-3947-01 10 114182198 114182198 C T ACSL5 Missense_Mutation p.P587L 0.31 deleterious(0) probably_damaging(0.952) TCGA-AA-3947-01 10 114298088 114298088 C T VTI1A Silent p.T142T 0.34 TCGA-AA-3947-01 10 116046085 116046085 C T VWA2 Missense_Mutation p.A462V 0.13 tolerated(0.44) benign(0.064) TCGA-AA-3947-01 10 117853275 117853275 C T GFRA1 Missense_Mutation p.S318N 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 10 117884976 117884976 T C GFRA1 Missense_Mutation p.T176A 0.22 tolerated(0.09) benign(0.028) TCGA-AA-3947-01 10 119798493 119798493 G A RAB11FIP2 Missense_Mutation p.P419S 0.12 tolerated(0.44) benign(0.006) TCGA-AA-3947-01 10 122619679 122619679 G A WDR11 Silent p.P137P 0.38 TCGA-AA-3947-01 10 122662711 122662711 C T WDR11 Silent p.C966C 0.30 TCGA-AA-3947-01 10 1229246 1229246 C - ADARB2 Frame_Shift_Del p.A703Rfs*7 0.26 TCGA-AA-3947-01 10 124800805 124800805 T G ACADSB Missense_Mutation p.D197E 0.22 deleterious(0.04) benign(0.088) TCGA-AA-3947-01 10 124895627 124895627 C - HMX3 Frame_Shift_Del p.P23Hfs*100 0.41 TCGA-AA-3947-01 10 126205813 126205813 C T LHPP Missense_Mutation p.A230V 0.21 deleterious(0.01) probably_damaging(0.92) TCGA-AA-3947-01 10 126631124 126631124 C T ZRANB1 Missense_Mutation p.A21V 0.21 deleterious(0) probably_damaging(0.99) TCGA-AA-3947-01 10 127724842 127724843 - G ADAM12 Frame_Shift_Ins p.L804Pfs*27 0.25 TCGA-AA-3947-01 10 128193313 128193313 G A C10orf90 Silent p.R152R 0.62 TCGA-AA-3947-01 10 128193375 128193375 C A C10orf90 Missense_Mutation p.G132C 0.25 deleterious(0) possibly_damaging(0.794) TCGA-AA-3947-01 10 129913839 129913839 T C MKI67 Missense_Mutation p.D278G 0.19 tolerated(0.67) benign(0) TCGA-AA-3947-01 10 133967326 133967326 G A JAKMIP3 Missense_Mutation p.E711K 0.37 deleterious(0.03) benign(0.062) TCGA-AA-3947-01 10 134014001 134014001 C T DPYSL4 Missense_Mutation p.T318I 0.23 tolerated(0.28) probably_damaging(0.925) TCGA-AA-3947-01 10 134188810 134188810 C T LRRC27 3'UTR 0.36 TCGA-AA-3947-01 10 134941864 134941864 G A GPR123 Missense_Mutation p.A178T 0.37 deleterious(0) probably_damaging(0.951) TCGA-AA-3947-01 10 135003099 135003099 C T KNDC1 Intron 0.46 TCGA-AA-3947-01 10 14976519 14976519 C T DCLRE1C Missense_Mutation p.E180K 0.45 tolerated(0.09) benign(0.264) TCGA-AA-3947-01 10 15697375 15697375 C T ITGA8 Missense_Mutation p.V327I 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3947-01 10 16992052 16992052 T C CUBN Silent p.A1676A 0.21 TCGA-AA-3947-01 10 18276469 18276469 G A SLC39A12 Silent p.A386A 0.08 TCGA-AA-3947-01 10 21805754 21805754 C T SKIDA1 Missense_Mutation p.C333Y 0.22 tolerated_low_confidence(0.41) possibly_damaging(0.831) TCGA-AA-3947-01 10 23321863 23321863 A C ARMC3 Missense_Mutation p.S774R 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 10 24762236 24762236 C T KIAA1217 Missense_Mutation p.A309V 0.33 tolerated(0.15) benign(0.126) TCGA-AA-3947-01 10 24762398 24762398 G A KIAA1217 Missense_Mutation p.S363N 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-AA-3947-01 10 25010821 25010821 G A ARHGAP21 Missense_Mutation p.A3V 0.46 deleterious_low_confidence(0) possibly_damaging(0.572) TCGA-AA-3947-01 10 25284663 25284663 T - ENKUR Frame_Shift_Del p.K120Sfs*22 0.24 TCGA-AA-3947-01 10 26310576 26310576 A T MYO3A Missense_Mutation p.R244W 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 10 26462709 26462709 A C MYO3A Missense_Mutation p.E1172D 0.38 tolerated_low_confidence(0.14) benign(0.009) TCGA-AA-3947-01 10 26500807 26500807 A C MYO3A Missense_Mutation p.E1589A 0.39 tolerated_low_confidence(0.17) benign(0.292) TCGA-AA-3947-01 10 27405163 27405163 C T YME1L1 Missense_Mutation p.D668N 0.34 deleterious(0) probably_damaging(0.969) TCGA-AA-3947-01 10 287975 287975 G A ZMYND11 Silent p.E282E 0.33 TCGA-AA-3947-01 10 28970366 28970366 C T BAMBI Nonsense_Mutation p.R86* 0.35 TCGA-AA-3947-01 10 30316767 30316767 G A KIAA1462 Silent p.S770S 0.11 TCGA-AA-3947-01 10 30317505 30317505 T C KIAA1462 Silent p.G524G 0.12 TCGA-AA-3947-01 10 30317974 30317974 C A KIAA1462 Missense_Mutation p.G368V 0.32 deleterious(0.05) possibly_damaging(0.687) TCGA-AA-3947-01 10 30611378 30611378 A - MTPAP Frame_Shift_Del p.L388Sfs*12 0.28 TCGA-AA-3947-01 10 30739388 30739388 C T MAP3K8 Missense_Mutation p.H236Y 0.36 deleterious(0) possibly_damaging(0.5) TCGA-AA-3947-01 10 323302 323302 T C DIP2C Missense_Mutation p.D1545G 0.11 tolerated(0.06) possibly_damaging(0.681) TCGA-AA-3947-01 10 33491503 33491515 GGTCTGAAAATAA TC NRP1 Intron 0.11 TCGA-AA-3947-01 10 34400339 34400339 C T PARD3 Missense_Mutation p.A1277T 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-3947-01 10 34671730 34671730 T C PARD3 Silent p.S379S 0.41 TCGA-AA-3947-01 10 35437369 35437369 G A CREM Missense_Mutation p.A40T 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.812) TCGA-AA-3947-01 10 35500543 35500543 A - CREM Intron 0.18 TCGA-AA-3947-01 10 35929104 35929104 C T FZD8 Silent p.S418S 0.20 TCGA-AA-3947-01 10 38121322 38121322 T C ZNF248 Missense_Mutation p.R321G 0.05 tolerated(1) benign(0.002) TCGA-AA-3947-01 10 43089472 43089472 T A ZNF33B Missense_Mutation p.N309I 0.05 deleterious(0.02) possibly_damaging(0.563) TCGA-AA-3947-01 10 43604481 43604481 C T RET Silent p.L356L 0.18 TCGA-AA-3947-01 10 43607555 43607555 G A RET Missense_Mutation p.E511K 0.29 tolerated(0.36) benign(0.005) TCGA-AA-3947-01 10 44141584 44141584 C A ZNF32 5'UTR 0.08 TCGA-AA-3947-01 10 45480314 45480314 G A RASSF4 Missense_Mutation p.A143T 0.37 deleterious(0.03) possibly_damaging(0.558) TCGA-AA-3947-01 10 45954685 45954685 G A MARCH8 Missense_Mutation p.R152C 0.39 deleterious(0.01) benign(0.168) TCGA-AA-3947-01 10 46250476 46250476 C - FAM21C Frame_Shift_Del p.P446Lfs*51 0.27 TCGA-AA-3947-01 10 47088227 47088227 C T NPY4R 3'UTR 0.17 TCGA-AA-3947-01 10 48382200 48382200 G A RBP3 Missense_Mutation p.T1150I 0.22 tolerated(0.17) benign(0.002) TCGA-AA-3947-01 10 49658566 49658566 C T ARHGAP22 Missense_Mutation p.D552N 0.38 tolerated(0.15) benign(0.031) TCGA-AA-3947-01 10 50315720 50315720 C T VSTM4 Missense_Mutation p.V126I 0.36 tolerated(1) benign(0.025) TCGA-AA-3947-01 10 50822225 50822225 C T CHAT 5'UTR 0.34 TCGA-AA-3947-01 10 50857591 50857591 G A CHAT Missense_Mutation p.V474I 0.39 tolerated(0.27) benign(0.002) TCGA-AA-3947-01 10 50863176 50863176 C T CHAT Missense_Mutation p.A557V 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3947-01 10 50946119 50946119 C A OGDHL Splice_Site p.X798_splice 0.38 TCGA-AA-3947-01 10 54074315 54074315 G A DKK1 Missense_Mutation p.A41T 0.33 deleterious(0) possibly_damaging(0.899) TCGA-AA-3947-01 10 5443003 5443004 - A TUBAL3 Frame_Shift_Ins p.D18Gfs*21 0.17 TCGA-AA-3947-01 10 5978473 5978473 C T FBXO18 Missense_Mutation p.R1013C 0.13 tolerated(0.24) benign(0.005) TCGA-AA-3947-01 10 6008141 6008141 C T IL15RA Missense_Mutation p.A84T 0.08 tolerated(0.3) probably_damaging(0.988) TCGA-AA-3947-01 10 61552833 61552833 A T CCDC6 Missense_Mutation p.F423I 0.37 deleterious(0) probably_damaging(0.95) TCGA-AA-3947-01 10 61967973 61967973 G A ANK3 Missense_Mutation p.H339Y 0.08 probably_damaging(0.989) TCGA-AA-3947-01 10 68686122 68686122 G T LRRTM3 5'UTR 0.50 TCGA-AA-3947-01 10 69565486 69565486 A G DNAJC12 Silent p.T119T 0.12 TCGA-AA-3947-01 10 69881209 69881209 G T MYPN Missense_Mutation p.S5I 0.30 deleterious(0) benign(0.358) TCGA-AA-3947-01 10 70136608 70136608 A G RUFY2 Splice_Site p.X477_splice 0.16 TCGA-AA-3947-01 10 70246962 70246962 A T SLC25A16 Missense_Mutation p.F261I 0.07 deleterious(0.02) benign(0.152) TCGA-AA-3947-01 10 70645664 70645664 G T STOX1 Missense_Mutation p.E704D 0.11 tolerated(0.06) benign(0.025) TCGA-AA-3947-01 10 70987019 70987019 G T HKDC1 Missense_Mutation p.M40I 0.41 tolerated(0.09) benign(0.101) TCGA-AA-3947-01 10 72192555 72192555 C A NODAL 3'UTR 0.18 TCGA-AA-3947-01 10 72629616 72629616 C T SGPL1 Missense_Mutation p.R258W 0.35 tolerated(0.1) possibly_damaging(0.893) TCGA-AA-3947-01 10 73051363 73051363 C T UNC5B Missense_Mutation p.T490M 0.36 tolerated(0.1) benign(0.011) TCGA-AA-3947-01 10 73059019 73059019 C T UNC5B Silent p.T941T 0.42 TCGA-AA-3947-01 10 73579295 73579295 T - PSAP Frame_Shift_Del p.N426Tfs*37 0.17 TCGA-AA-3947-01 10 75567575 75567575 A - NDST2 Frame_Shift_Del p.L191Yfs*12 0.34 TCGA-AA-3947-01 10 75574949 75574949 C T CAMK2G Missense_Mutation p.V499M 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.656) TCGA-AA-3947-01 10 75676249 75676249 G A PLAU Missense_Mutation p.V408I 0.40 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 10 7679284 7679284 C T ITIH5 Missense_Mutation p.V187M 0.40 deleterious(0) probably_damaging(0.921) TCGA-AA-3947-01 10 76865547 76865547 C T DUSP13 Intron 0.48 TCGA-AA-3947-01 10 76990826 76990826 T - VDAC2 3'UTR 0.13 TCGA-AA-3947-01 10 78771741 78771741 T - KCNMA1 Frame_Shift_Del p.K692Nfs*36 0.28 TCGA-AA-3947-01 10 81275539 81275539 G A EIF5AL1 3'UTR 0.19 TCGA-AA-3947-01 10 81928943 81928943 A T ANXA11 Missense_Mutation p.S115T 0.35 tolerated(0.43) unknown(0) TCGA-AA-3947-01 10 82363495 82363495 A G SH2D4B Silent p.R268R 0.14 TCGA-AA-3947-01 10 85972916 85972916 A G CDHR1 Missense_Mutation p.N618D 0.11 tolerated(0.21) benign(0.02) TCGA-AA-3947-01 10 88423518 88423518 C - OPN4 Frame_Shift_Del p.R466Dfs*16 0.16 TCGA-AA-3947-01 10 88767432 88767432 C T RP11-96C23.10 3'Flank 0.04 TCGA-AA-3947-01 10 88818959 88818959 G A GLUD1 Silent p.S450S 0.23 TCGA-AA-3947-01 10 89574213 89574213 T - ATAD1 Frame_Shift_Del p.V49* 0.20 TCGA-AA-3947-01 10 91162429 91162429 C T IFIT1 Missense_Mutation p.R133C 0.39 tolerated(0.28) benign(0.014) TCGA-AA-3947-01 10 91478553 91478553 T C KIF20B Missense_Mutation p.I453T 0.42 deleterious(0) probably_damaging(0.99) TCGA-AA-3947-01 10 94214246 94214246 A G IDE Silent p.F1005F 0.16 TCGA-AA-3947-01 10 94834098 94834098 T C CYP26A1 Missense_Mutation p.Y75H 0.32 tolerated(0.11) probably_damaging(1) TCGA-AA-3947-01 10 96269849 96269849 T C TBC1D12 Silent p.G534G 0.32 TCGA-AA-3947-01 10 96708915 96708915 C A CYP2C9 Missense_Mutation p.N231K 0.38 tolerated(0.58) benign(0.011) TCGA-AA-3947-01 10 97397115 97397115 G A ALDH18A1 Missense_Mutation p.R128C 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 10 98240201 98240201 T C TLL2 Missense_Mutation p.D64G 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 10 99332354 99332354 G - ANKRD2 5'UTR 0.20 TCGA-AA-3947-01 11 100836464 100836464 A - ARHGAP42 Frame_Shift_Del p.N504Tfs*8 0.29 TCGA-AA-3947-01 11 100863693 100863693 G C TMEM133 3'UTR 0.24 TCGA-AA-3947-01 11 101762169 101762169 G C ANGPTL5 Missense_Mutation p.N336K 0.39 deleterious(0.01) possibly_damaging(0.784) TCGA-AA-3947-01 11 101833372 101833373 - A KIAA1377 Frame_Shift_Ins p.Q538Tfs*5 0.26 TCGA-AA-3947-01 11 101937275 101937275 T - C11orf70 Frame_Shift_Del p.H112Ifs*19 0.18 TCGA-AA-3947-01 11 102221659 102221659 C T BIRC2 Missense_Mutation p.A327V 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 11 1023525 1023525 T C MUC6 Silent p.P1170P 0.09 TCGA-AA-3947-01 11 1026035 1026035 C T MUC6 Missense_Mutation p.V885I 0.14 unknown(0) TCGA-AA-3947-01 11 102649974 102649974 C G MMP10 Missense_Mutation p.A156P 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3947-01 11 102709910 102709910 G A MMP3 Missense_Mutation p.P334S 0.32 tolerated(0.06) possibly_damaging(0.592) TCGA-AA-3947-01 11 10651174 10651174 G A MRVI1 Missense_Mutation p.A162V 0.12 deleterious(0.02) possibly_damaging(0.782) TCGA-AA-3947-01 11 107992345 107992345 G A ACAT1 Silent p.L4L 0.13 TCGA-AA-3947-01 11 10821282 10821282 C T EIF4G2 Missense_Mutation p.R714H 0.35 deleterious(0) possibly_damaging(0.882) TCGA-AA-3947-01 11 108385202 108385202 A - EXPH5 Frame_Shift_Del p.P345Qfs*45 0.28 TCGA-AA-3947-01 11 108811162 108811162 G A DDX10 3'UTR 0.41 TCGA-AA-3947-01 11 1093684 1093684 C - MUC2 Frame_Shift_Del p.T1837Pfs*11 0.08 TCGA-AA-3947-01 11 110477388 110477389 - G ARHGAP20 Frame_Shift_Ins p.N289Qfs*34 0.26 TCGA-AA-3947-01 11 111167074 111167074 A G COLCA1 Missense_Mutation p.C44R 0.20 possibly_damaging(0.588) TCGA-AA-3947-01 11 111782389 111782389 G - CRYAB Frame_Shift_Del p.S21Afs*24 0.32 TCGA-AA-3947-01 11 113200680 113200680 G T TTC12 Silent p.V161V 0.37 TCGA-AA-3947-01 11 113266109 113266109 A G ANKK1 Missense_Mutation p.T221A 0.18 tolerated(0.17) benign(0.158) TCGA-AA-3947-01 11 114450890 114450890 G A NXPE4 Missense_Mutation p.R355C 0.35 tolerated(0.05) benign(0.175) TCGA-AA-3947-01 11 114453599 114453599 G T NXPE4 Missense_Mutation p.Q81K 0.21 tolerated(0.14) benign(0.033) TCGA-AA-3947-01 11 116660932 116660932 C T APOA5 Missense_Mutation p.S338N 0.07 tolerated(0.16) benign(0.006) TCGA-AA-3947-01 11 116746118 116746118 A G SIK3 Missense_Mutation p.L372P 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3947-01 11 117299188 117299188 G - DSCAML1 Frame_Shift_Del p.S2067Afs*24 0.29 TCGA-AA-3947-01 11 117299422 117299422 G T DSCAML1 Silent p.A1988A 0.21 TCGA-AA-3947-01 11 117307884 117307884 G T DSCAML1 Silent p.G1618G 0.25 TCGA-AA-3947-01 11 117860269 117860269 C T IL10RA Missense_Mutation p.R101W 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 11 118498200 118498200 C T PHLDB1 Missense_Mutation p.P221S 0.39 tolerated(0.1) possibly_damaging(0.717) TCGA-AA-3947-01 11 118531400 118531400 T C TREH Missense_Mutation p.E317G 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 11 118656864 118656864 C A DDX6 Nonsense_Mutation p.G33* 0.05 TCGA-AA-3947-01 11 118949009 118949009 C T VPS11 Nonsense_Mutation p.R629* 0.47 TCGA-AA-3947-01 11 119003663 119003663 G A HINFP Missense_Mutation p.S322N 0.46 deleterious(0.01) benign(0.258) TCGA-AA-3947-01 11 119185865 119185865 T C MCAM Missense_Mutation p.H59R 0.17 deleterious(0.01) benign(0.345) TCGA-AA-3947-01 11 119216756 119216756 G A MFRP Nonsense_Mutation p.Q91* 0.44 TCGA-AA-3947-01 11 119535589 119535589 G A PVRL1 Silent p.A474A 0.35 TCGA-AA-3947-01 11 120673565 120673565 C T GRIK4 Silent p.T82T 0.31 TCGA-AA-3947-01 11 120745871 120745871 C T GRIK4 Silent p.G361G 0.17 TCGA-AA-3947-01 11 120979931 120979931 C T TECTA Silent p.N70N 0.18 TCGA-AA-3947-01 11 121016639 121016639 C A TECTA Missense_Mutation p.Q1307K 0.16 tolerated(1) benign(0.002) TCGA-AA-3947-01 11 12234942 12234942 C A MICAL2 Missense_Mutation p.L278I 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3947-01 11 12247855 12247855 G A MICAL2 Missense_Mutation p.S609N 0.18 deleterious(0.03) possibly_damaging(0.483) TCGA-AA-3947-01 11 123508961 123508961 G A SCN3B Silent p.L173L 0.32 TCGA-AA-3947-01 11 123893867 123893867 G A OR10G9 Missense_Mutation p.D50N 0.21 tolerated(0.05) benign(0.053) TCGA-AA-3947-01 11 124012399 124012399 C T VWA5A Silent p.D658D 0.40 TCGA-AA-3947-01 11 124751208 124751208 T C ROBO3 3'UTR 0.37 TCGA-AA-3947-01 11 129306839 129306839 G A BARX2 Silent p.T127T 0.10 TCGA-AA-3947-01 11 129787027 129787027 C T PRDM10 Missense_Mutation p.D778N 0.13 tolerated(0.19) possibly_damaging(0.794) TCGA-AA-3947-01 11 130106899 130106899 G A ZBTB44 Intron 0.38 TCGA-AA-3947-01 11 130785482 130785482 T C SNX19 Missense_Mutation p.Y118C 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 11 132289962 132289962 A G OPCML 3'UTR 0.56 TCGA-AA-3947-01 11 133791167 133791167 G A IGSF9B Missense_Mutation p.S818L 0.46 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3947-01 11 133816128 133816128 G A IGSF9B Silent p.P30P 0.44 TCGA-AA-3947-01 11 134073971 134073971 G T NCAPD3 Silent p.A395A 0.11 TCGA-AA-3947-01 11 134241679 134241679 C T GLB1L2 Missense_Mutation p.R488C 0.19 tolerated(0.47) benign(0.001) TCGA-AA-3947-01 11 14282205 14282205 C T RP11-21L19.1 3'Flank 0.10 TCGA-AA-3947-01 11 14480201 14480201 G A COPB1 Silent p.A893A 0.34 TCGA-AA-3947-01 11 15212263 15212263 T A INSC Missense_Mutation p.I246N 0.39 deleterious(0) benign(0.246) TCGA-AA-3947-01 11 16848056 16848056 G A PLEKHA7 Silent p.P318P 0.28 TCGA-AA-3947-01 11 17599934 17599934 G A OTOG Missense_Mutation p.A886T 0.21 benign(0.019) TCGA-AA-3947-01 11 17627604 17627604 G A OTOG Missense_Mutation p.V1372M 0.20 benign(0.389) TCGA-AA-3947-01 11 18159538 18159538 T A MRGPRX3 Silent p.L263L 0.43 TCGA-AA-3947-01 11 1858268 1858268 C - SYT8 Frame_Shift_Del p.Y307Tfs*36 0.08 TCGA-AA-3947-01 11 18725928 18725928 C A TMEM86A 3'UTR 0.09 TCGA-AA-3947-01 11 1874354 1874354 T C LSP1 5'UTR 0.39 TCGA-AA-3947-01 11 20005717 20005717 C T NAV2 Missense_Mutation p.R921W 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 11 20178129 20178129 C T DBX1 Silent p.G260G 0.33 TCGA-AA-3947-01 11 20658777 20658777 C G SLC6A5 Silent p.R599R 0.08 TCGA-AA-3947-01 11 20691162 20691162 G A NELL1 5'UTR 0.31 TCGA-AA-3947-01 11 20950023 20950023 G A NELL1 Missense_Mutation p.R332Q 0.37 tolerated(0.35) benign(0.026) TCGA-AA-3947-01 11 2424138 2424138 G A TSSC4 Missense_Mutation p.R92H 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 11 26587102 26587102 G T MUC15 Missense_Mutation p.P129T 0.23 tolerated_low_confidence(0.11) probably_damaging(0.958) TCGA-AA-3947-01 11 28058000 28058000 T C KIF18A Silent p.V720V 0.33 TCGA-AA-3947-01 11 290715 290715 G - ATHL1 Frame_Shift_Del p.P172Hfs*16 0.13 TCGA-AA-3947-01 11 30032627 30032627 G T KCNA4 Silent p.I533I 0.30 TCGA-AA-3947-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.36 TCGA-AA-3947-01 11 3028166 3028166 C T CARS Missense_Mutation p.D698N 0.18 deleterious(0) probably_damaging(0.919) TCGA-AA-3947-01 11 3249827 3249827 G A MRGPRE Missense_Mutation p.A67V 0.36 deleterious(0) probably_damaging(0.926) TCGA-AA-3947-01 11 34173819 34173819 A G ABTB2 3'UTR 0.33 TCGA-AA-3947-01 11 34527247 34527247 C T ELF5 Missense_Mutation p.C27Y 0.35 tolerated(0.16) benign(0) TCGA-AA-3947-01 11 36595407 36595407 A C RAG1 Silent p.R185R 0.45 TCGA-AA-3947-01 11 3740678 3740678 T A NUP98 Missense_Mutation p.D788V 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 11 3746392 3746392 A C NUP98 Silent p.P596P 0.12 TCGA-AA-3947-01 11 3845187 3845187 C T PGAP2 Silent p.C141C 0.38 TCGA-AA-3947-01 11 4104728 4104728 T C STIM1 Missense_Mutation p.S492P 0.36 tolerated(0.05) benign(0.002) TCGA-AA-3947-01 11 4156490 4156490 G A RRM1 Missense_Mutation p.G727D 0.23 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-AA-3947-01 11 45924465 45924465 C T MAPK8IP1 Silent p.L383L 0.43 TCGA-AA-3947-01 11 45950225 45950226 - C GYLTL1B Frame_Shift_Ins p.H667Pfs*18 0.08 TCGA-AA-3947-01 11 45955694 45955694 C T PHF21A Missense_Mutation p.R623H 0.37 tolerated(0.06) possibly_damaging(0.617) TCGA-AA-3947-01 11 4608103 4608103 A - OR52I2 Frame_Shift_Del p.V23Sfs*4 0.11 TCGA-AA-3947-01 11 4621818 4621818 C A TRIM68 Missense_Mutation p.K382N 0.44 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 11 46388284 46388284 C T DGKZ Missense_Mutation p.R160C 0.65 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-AA-3947-01 11 46388346 46388346 G A DGKZ Silent p.L180L 0.45 TCGA-AA-3947-01 11 46401093 46401093 C T DGKZ Missense_Mutation p.A1071V 0.17 deleterious(0) probably_damaging(0.971) TCGA-AA-3947-01 11 4674863 4674863 T - OR51E1 3'UTR 0.10 TCGA-AA-3947-01 11 46818455 46818455 G A CKAP5 Silent p.A458A 0.37 TCGA-AA-3947-01 11 46921049 46921049 G A LRP4 Missense_Mutation p.R146C 0.38 deleterious(0.01) probably_damaging(0.953) TCGA-AA-3947-01 11 47195030 47195030 G A ARFGAP2 Missense_Mutation p.P189L 0.41 tolerated(0.06) benign(0.001) TCGA-AA-3947-01 11 47837187 47837187 T C NUP160 Silent p.V510V 0.30 TCGA-AA-3947-01 11 490633 490633 C A PTDSS2 3'UTR 0.53 TCGA-AA-3947-01 11 4929079 4929079 C A OR51A7 Silent p.P160P 0.30 TCGA-AA-3947-01 11 49597836 49597836 A T RP11-707M1.1 RNA 0.11 TCGA-AA-3947-01 11 49974165 49974165 T C OR4C13 Missense_Mutation p.L64P 0.07 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AA-3947-01 11 5173120 5173120 T C OR52A1 Silent p.P160P 0.11 TCGA-AA-3947-01 11 5270637 5270637 C T HBG1 Silent p.L92L 0.14 TCGA-AA-3947-01 11 5275561 5275561 C T HBG2 Silent p.L92L 0.21 TCGA-AA-3947-01 11 532700 532700 C T HRAS Missense_Mutation p.R169Q 0.35 tolerated(0.28) benign(0.001) TCGA-AA-3947-01 11 55038002 55038002 A C TRIM48 3'UTR 0.09 TCGA-AA-3947-01 11 551227 551228 - C LRRC56 Frame_Shift_Ins p.R244Afs*34 0.24 TCGA-AA-3947-01 11 5536745 5536745 T C UBQLNL Silent p.S309S 0.20 TCGA-AA-3947-01 11 55563621 55563621 C A OR5D14 Missense_Mutation p.P197H 0.44 deleterious(0.02) possibly_damaging(0.726) TCGA-AA-3947-01 11 55681391 55681391 A G OR5W2 Missense_Mutation p.L223P 0.12 tolerated(0.15) benign(0.095) TCGA-AA-3947-01 11 558069 558069 G - C11orf35 Intron 0.27 TCGA-AA-3947-01 11 55890035 55890035 T G OR8H3 Missense_Mutation p.F63V 0.10 deleterious(0) probably_damaging(0.979) TCGA-AA-3947-01 11 55927238 55927238 G A OR8K5 Missense_Mutation p.P186S 0.09 tolerated_low_confidence(1) benign(0.04) TCGA-AA-3947-01 11 56043137 56043137 T C OR5T1 Missense_Mutation p.M8T 0.19 tolerated_low_confidence(0.17) benign(0.001) TCGA-AA-3947-01 11 5632196 5632196 A G TRIM6 Missense_Mutation p.K392R 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3947-01 11 563489 563490 - C RASSF7 Intron 0.19 TCGA-AA-3947-01 11 56756444 56756444 C T OR5AK2 Missense_Mutation p.A19V 0.06 tolerated(0.25) benign(0.001) TCGA-AA-3947-01 11 57427139 57427139 C T CLP1 Missense_Mutation p.A64V 0.08 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 11 57564461 57564461 T G CTNND1 Missense_Mutation p.L318R 0.08 tolerated(0.22) possibly_damaging(0.899) TCGA-AA-3947-01 11 57798999 57798999 C T OR6Q1 Missense_Mutation p.S192L 0.20 deleterious(0) benign(0.355) TCGA-AA-3947-01 11 57948731 57948731 T C OR9Q1 3'UTR 0.31 TCGA-AA-3947-01 11 57971603 57971603 T G OR1S2 Missense_Mutation p.E17D 0.16 tolerated(0.46) benign(0.024) TCGA-AA-3947-01 11 59556356 59556356 T C STX3 Silent p.D75D 0.38 TCGA-AA-3947-01 11 60183507 60183507 C - MS4A14 Frame_Shift_Del p.P390Lfs*19 0.08 TCGA-AA-3947-01 11 60565866 60565866 C T MS4A10 Intron 0.09 TCGA-AA-3947-01 11 60689458 60689458 C T TMEM109 Missense_Mutation p.R185W 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 11 61042027 61042027 C T VWCE Missense_Mutation p.A509T 0.09 tolerated(0.25) benign(0.026) TCGA-AA-3947-01 11 61161441 61161442 - T TMEM216 Frame_Shift_Ins p.G77Wfs*16 0.15 TCGA-AA-3947-01 11 61404425 61404425 A G RPLP0P2 RNA 0.08 TCGA-AA-3947-01 11 61488352 61488352 C T DAGLA Silent p.Y99Y 0.15 TCGA-AA-3947-01 11 61504707 61504707 G A DAGLA Silent p.A475A 0.44 TCGA-AA-3947-01 11 61547322 61547322 C T MYRF Silent p.S752S 0.33 TCGA-AA-3947-01 11 61558075 61558075 C A TMEM258 Splice_Site p.X2_splice 0.32 TCGA-AA-3947-01 11 61731659 61731659 T C BEST1 3'UTR 0.24 TCGA-AA-3947-01 11 62286069 62286069 C T AHNAK Missense_Mutation p.E5274K 0.30 possibly_damaging(0.742) TCGA-AA-3947-01 11 62292856 62292856 C A AHNAK Silent p.V3011V 0.43 TCGA-AA-3947-01 11 62299097 62299097 C T AHNAK Missense_Mutation p.G931D 0.40 benign(0.331) TCGA-AA-3947-01 11 62381295 62381295 A G ROM1 Missense_Mutation p.Q181R 0.16 deleterious(0) probably_damaging(0.994) TCGA-AA-3947-01 11 62415146 62415146 G A INTS5 Silent p.P802P 0.07 TCGA-AA-3947-01 11 62490296 62490296 C T HNRNPUL2 Missense_Mutation p.R324H 0.20 tolerated(0.2) benign(0.001) TCGA-AA-3947-01 11 62554021 62554021 C A TAF6L Silent p.A374A 0.38 TCGA-AA-3947-01 11 62574782 62574782 G A STX5 3'UTR 0.38 TCGA-AA-3947-01 11 62648707 62648707 T C SLC3A2 Missense_Mutation p.V173A 0.09 tolerated(0.08) benign(0.205) TCGA-AA-3947-01 11 62911059 62911059 C T SLC22A24 Missense_Mutation p.G65R 0.39 tolerated(0.14) benign(0.051) TCGA-AA-3947-01 11 63681782 63681782 C T RCOR2 Missense_Mutation p.R209Q 0.37 tolerated(0.54) benign(0.123) TCGA-AA-3947-01 11 63884950 63884950 C T FLRT1 Missense_Mutation p.T404M 0.31 tolerated(0.22) possibly_damaging(0.796) TCGA-AA-3947-01 11 63970956 63970956 C T STIP1 Missense_Mutation p.A474V 0.43 tolerated(0.14) benign(0.042) TCGA-AA-3947-01 11 640422 640422 C T DRD4 Missense_Mutation p.T360M 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3947-01 11 64107709 64107709 C T CCDC88B 5'UTR 0.38 TCGA-AA-3947-01 11 6415745 6415745 C T SMPD1 Missense_Mutation p.R602C 0.40 deleterious(0) probably_damaging(0.993) TCGA-AA-3947-01 11 6432517 6432517 C T APBB1 Missense_Mutation p.A21T 0.15 tolerated(0.23) benign(0.021) TCGA-AA-3947-01 11 64375171 64375171 C T NRXN2 Missense_Mutation p.A1546T 0.14 tolerated_low_confidence(0.39) benign(0.068) TCGA-AA-3947-01 11 644549 644549 C A DEAF1 3'UTR 0.26 TCGA-AA-3947-01 11 64509569 64509569 A G RASGRP2 Missense_Mutation p.V30A 0.33 deleterious(0.01) benign(0.101) TCGA-AA-3947-01 11 64525297 64525297 C T PYGM Missense_Mutation p.G205D 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 11 64543993 64543993 C T SF1 Missense_Mutation p.R171Q 0.32 tolerated(0.41) benign(0.093) TCGA-AA-3947-01 11 64572092 64572093 - G MEN1 Frame_Shift_Ins p.R521Pfs*15 0.21 TCGA-AA-3947-01 11 64695831 64695831 G T PPP2R5B Missense_Mutation p.R219L 0.37 deleterious(0.01) probably_damaging(0.966) TCGA-AA-3947-01 11 64812885 64812885 G A NAALADL1 Missense_Mutation p.P694L 0.36 deleterious(0) probably_damaging(0.994) TCGA-AA-3947-01 11 64898783 64898783 G A SYVN1 Silent p.F240F 0.31 TCGA-AA-3947-01 11 64951049 64951049 A G CAPN1 Missense_Mutation p.I148V 0.10 deleterious(0.02) benign(0.092) TCGA-AA-3947-01 11 65143967 65143967 G A SLC25A45 Missense_Mutation p.R260W 0.13 deleterious(0) probably_damaging(0.967) TCGA-AA-3947-01 11 65305937 65305937 G A SCYL1 Missense_Mutation p.R776Q 0.06 deleterious(0.01) possibly_damaging(0.536) TCGA-AA-3947-01 11 65385925 65385925 G A PCNXL3 Silent p.T364T 0.09 TCGA-AA-3947-01 11 65386273 65386274 - C PCNXL3 Frame_Shift_Ins p.K483Qfs*11 0.26 TCGA-AA-3947-01 11 65421943 65421943 G - RELA Frame_Shift_Del p.P521Rfs*26 0.26 TCGA-AA-3947-01 11 65482186 65482186 G A KAT5 Missense_Mutation p.R304H 0.17 deleterious(0.03) benign(0.003) TCGA-AA-3947-01 11 65653077 65653077 T - FIBP Frame_Shift_Del p.K190Nfs*5 0.30 TCGA-AA-3947-01 11 6592175 6592175 G A DNHD1 Missense_Mutation p.R4478Q 0.43 benign(0.019) TCGA-AA-3947-01 11 66029623 66029623 A G KLC2 Silent p.T163T 0.08 TCGA-AA-3947-01 11 66133689 66133689 G A SLC29A2 Missense_Mutation p.A294V 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 11 66188672 66188672 G A NPAS4 Missense_Mutation p.A8T 0.09 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 11 66333182 66333182 G A CTSF Silent p.G335G 0.31 TCGA-AA-3947-01 11 6648416 6648416 C T DCHS1 Missense_Mutation p.D1952N 0.38 deleterious(0.01) probably_damaging(1) TCGA-AA-3947-01 11 66627383 66627383 G - LRFN4 Frame_Shift_Del p.A544Pfs*80 0.20 TCGA-AA-3947-01 11 67177137 67177137 G T TBC1D10C Missense_Mutation p.G418V 0.38 deleterious_low_confidence(0.04) benign(0.2) TCGA-AA-3947-01 11 67219165 67219165 G A GPR152 Missense_Mutation p.P344L 0.37 tolerated(0.09) benign(0.021) TCGA-AA-3947-01 11 67406986 67406986 G A TBX10 5'UTR 0.15 TCGA-AA-3947-01 11 68153972 68153972 C A LRP5 Missense_Mutation p.L402M 0.36 tolerated(0.08) probably_damaging(0.973) TCGA-AA-3947-01 11 68331809 68331809 G T PPP6R3 Missense_Mutation p.S295I 0.20 tolerated(0.06) benign(0.022) TCGA-AA-3947-01 11 68671252 68671252 G T MRPL21 Silent p.T9T 0.09 TCGA-AA-3947-01 11 68854600 68854600 C - TPCN2 Frame_Shift_Del p.R704Afs*17 0.10 TCGA-AA-3947-01 11 70178075 70178075 A - PPFIA1 Frame_Shift_Del p.N364Tfs*19 0.29 TCGA-AA-3947-01 11 70331696 70331696 C T SHANK2 Missense_Mutation p.V1569M 0.46 tolerated(0.11) benign(0.002) TCGA-AA-3947-01 11 70332663 70332663 T G SHANK2 Missense_Mutation p.K1246N 0.16 deleterious(0.03) benign(0.403) TCGA-AA-3947-01 11 70333157 70333157 C T SHANK2 Missense_Mutation p.A1082T 0.52 deleterious(0.04) benign(0.067) TCGA-AA-3947-01 11 7111081 7111081 G A RBMXL2 Missense_Mutation p.G244S 0.26 tolerated(0.09) possibly_damaging(0.862) TCGA-AA-3947-01 11 7111343 7111343 G A RBMXL2 Missense_Mutation p.G331D 0.33 tolerated(0.37) benign(0.005) TCGA-AA-3947-01 11 71249272 71249272 G - KRTAP5-8 Frame_Shift_Del p.G59Afs*156 0.09 TCGA-AA-3947-01 11 71850651 71850651 G - FOLR3 Frame_Shift_Del p.A215Pfs*61 0.28 TCGA-AA-3947-01 11 71942173 71942173 C T INPPL1 Silent p.R479R 0.25 TCGA-AA-3947-01 11 74915610 74915610 G T SLCO2B1 Missense_Mutation p.E705D 0.21 tolerated_low_confidence(0.12) benign(0.004) TCGA-AA-3947-01 11 75280326 75280326 A G SERPINH1 Intron 0.45 TCGA-AA-3947-01 11 76227240 76227240 C T C11orf30 Missense_Mutation p.A523V 0.37 tolerated(0.13) benign(0.118) TCGA-AA-3947-01 11 77047282 77047282 C A PAK1 Missense_Mutation p.R421L 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 11 771117 771117 G A PDDC1 Intron 0.26 TCGA-AA-3947-01 11 77920747 77920747 C T USP35 Missense_Mutation p.R616C 0.16 tolerated(0.09) unknown(0) TCGA-AA-3947-01 11 78399123 78399123 C A TENM4 Missense_Mutation p.G1746C 0.35 tolerated(0.09) possibly_damaging(0.76) TCGA-AA-3947-01 11 78497943 78497943 C T TENM4 Missense_Mutation p.A789T 0.40 tolerated(0.07) benign(0.17) TCGA-AA-3947-01 11 78525352 78525352 G - TENM4 Frame_Shift_Del p.D591Tfs*18 0.32 TCGA-AA-3947-01 11 802704 802704 C T PIDD Silent p.S299S 0.45 TCGA-AA-3947-01 11 804301 804301 G A PIDD Silent p.L30L 0.16 TCGA-AA-3947-01 11 8132306 8132306 C T RIC3 Missense_Mutation p.S350N 0.09 tolerated_low_confidence(0.21) benign(0.005) TCGA-AA-3947-01 11 8161539 8161539 A - RIC3 Frame_Shift_Del p.L109Yfs*46 0.08 TCGA-AA-3947-01 11 8496312 8496312 G T STK33 Missense_Mutation p.S47R 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.575) TCGA-AA-3947-01 11 85346749 85346749 C T TMEM126B Silent p.L146L 0.17 TCGA-AA-3947-01 11 85988174 85988174 G A EED Nonsense_Mutation p.W373* 0.16 TCGA-AA-3947-01 11 8646639 8646639 G C TRIM66 Missense_Mutation p.P669R 0.31 tolerated(0.1) probably_damaging(0.987) TCGA-AA-3947-01 11 8719178 8719178 G A ST5 Silent p.D982D 0.38 TCGA-AA-3947-01 11 88241669 88241669 C T GRM5 3'UTR 0.26 TCGA-AA-3947-01 11 88242605 88242605 G A GRM5 Missense_Mutation p.R932C 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3947-01 11 89224427 89224427 G A NOX4 5'UTR 0.52 TCGA-AA-3947-01 11 89536949 89536949 G T TRIM49 Missense_Mutation p.Q142K 0.24 tolerated(1) benign(0) TCGA-AA-3947-01 11 92086892 92086892 C A FAT3 Silent p.S538S 0.16 TCGA-AA-3947-01 11 92616301 92616301 C - FAT3 Frame_Shift_Del p.P4228Rfs*36 0.27 TCGA-AA-3947-01 11 93408790 93408790 T C KIAA1731 Silent p.H194H 0.37 TCGA-AA-3947-01 11 93420965 93420965 G T KIAA1731 Missense_Mutation p.A424S 0.22 tolerated(0.09) benign(0.062) TCGA-AA-3947-01 11 93460393 93460393 T G KIAA1731 Missense_Mutation p.L2251V 0.08 deleterious(0.05) possibly_damaging(0.724) TCGA-AA-3947-01 11 93471306 93471306 T - TAF1D Frame_Shift_Del p.N143Tfs*8 0.30 TCGA-AA-3947-01 11 93862614 93862614 C - PANX1 Frame_Shift_Del p.L47Cfs*18 0.28 TCGA-AA-3947-01 11 94704620 94704620 G A CWC15 Missense_Mutation p.R55C 0.30 tolerated(0.11) benign(0) TCGA-AA-3947-01 11 94862554 94862554 C T ENDOD1 Silent p.A438A 0.07 TCGA-AA-3947-01 11 96092241 96092241 C A CCDC82 Missense_Mutation p.M494I 0.06 tolerated(0.07) benign(0.019) TCGA-AA-3947-01 12 100904617 100904617 G A NR1H4 Silent p.S57S 0.39 TCGA-AA-3947-01 12 102576371 102576371 G A PARPBP Missense_Mutation p.R410H 0.15 deleterious(0.04) probably_damaging(0.99) TCGA-AA-3947-01 12 103352411 103352411 G A ASCL1 Missense_Mutation p.R130H 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3947-01 12 104014254 104014254 G T STAB2 Missense_Mutation p.G114C 0.49 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 12 104089528 104089528 C T STAB2 Missense_Mutation p.A1163V 0.15 tolerated(0.18) benign(0.151) TCGA-AA-3947-01 12 104326699 104326699 G A HSP90B1 Silent p.E130E 0.28 TCGA-AA-3947-01 12 104514239 104514239 C T NFYB Missense_Mutation p.G177D 0.06 tolerated(0.06) possibly_damaging(0.476) TCGA-AA-3947-01 12 106461102 106461102 C T NUAK1 Silent p.S488S 0.38 TCGA-AA-3947-01 12 108154378 108154378 C A PRDM4 5'UTR 0.27 TCGA-AA-3947-01 12 109831250 109831250 G A MYO1H Missense_Mutation p.V81I 0.43 tolerated(1) benign(0.005) TCGA-AA-3947-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.28 TCGA-AA-3947-01 12 110340923 110340923 G A TCHP Missense_Mutation p.R31Q 0.21 deleterious(0.02) probably_damaging(0.946) TCGA-AA-3947-01 12 110429529 110429529 A - GIT2 Frame_Shift_Del p.L30Yfs*12 0.26 TCGA-AA-3947-01 12 11138694 11138694 G A TAS2R50 Missense_Mutation p.R256W 0.38 deleterious(0) benign(0.001) TCGA-AA-3947-01 12 111801079 111801079 G A FAM109A Silent p.D64D 0.43 TCGA-AA-3947-01 12 111885616 111885616 G A SH2B3 Missense_Mutation p.V465I 0.35 tolerated(0.84) benign(0.009) TCGA-AA-3947-01 12 111990214 111990214 G A ATXN2 Silent p.A307A 0.33 TCGA-AA-3947-01 12 112590653 112590653 G A TRAFD1 3'UTR 0.22 TCGA-AA-3947-01 12 112622214 112622214 G C HECTD4 Missense_Mutation p.P3373R 0.59 benign(0.018) TCGA-AA-3947-01 12 113753240 113753240 C T SLC8B1 Silent p.V345V 0.11 TCGA-AA-3947-01 12 113835116 113835116 G A SDS Silent p.G169G 0.09 TCGA-AA-3947-01 12 114384271 114384271 G A RBM19 Missense_Mutation p.L473F 0.34 deleterious(0) possibly_damaging(0.718) TCGA-AA-3947-01 12 119583445 119583445 C T SRRM4 Missense_Mutation p.A344V 0.17 tolerated_low_confidence(0.16) probably_damaging(0.971) TCGA-AA-3947-01 12 119617376 119617377 - C HSPB8 Frame_Shift_Ins p.P90Tfs*37 0.40 TCGA-AA-3947-01 12 120168378 120168378 C T CIT Silent p.K1136K 0.47 TCGA-AA-3947-01 12 120527853 120527853 C T CCDC64 Missense_Mutation p.S513L 0.34 deleterious(0.05) probably_damaging(0.962) TCGA-AA-3947-01 12 120565671 120565671 G A GCN1L1 Silent p.D2666D 0.39 TCGA-AA-3947-01 12 121434367 121434367 C - HNF1A Frame_Shift_Del p.P379Lfs*5 0.11 TCGA-AA-3947-01 12 121435419 121435419 G A HNF1A Silent p.V484V 0.08 TCGA-AA-3947-01 12 121790104 121790104 T C ANAPC5 Missense_Mutation p.M14V 0.08 deleterious_low_confidence(0) benign(0.118) TCGA-AA-3947-01 12 122107363 122107364 - T MORN3 Frame_Shift_Ins p.S10Vfs*54 0.30 TCGA-AA-3947-01 12 122248120 122248120 C T SETD1B Silent p.R423R 0.44 TCGA-AA-3947-01 12 122252320 122252320 G A SETD1B Silent p.P733P 0.23 TCGA-AA-3947-01 12 122691019 122691019 G A B3GNT4 Missense_Mutation p.S74N 0.21 tolerated(0.09) benign(0.006) TCGA-AA-3947-01 12 12291779 12291779 G A LRP6 Intron 0.07 TCGA-AA-3947-01 12 122985209 122985209 A G ZCCHC8 Missense_Mutation p.I60T 0.27 deleterious(0.04) benign(0.193) TCGA-AA-3947-01 12 123052858 123052858 T - KNTC1 Frame_Shift_Del p.L554Yfs*3 0.08 TCGA-AA-3947-01 12 12317346 12317346 C T LRP6 Missense_Mutation p.R638Q 0.35 tolerated(0.15) benign(0.029) TCGA-AA-3947-01 12 123339665 123339665 G A HIP1R Missense_Mutation p.R281Q 0.29 tolerated(1) benign(0.087) TCGA-AA-3947-01 12 123340131 123340131 C - HIP1R Frame_Shift_Del p.N345Mfs*4 0.23 TCGA-AA-3947-01 12 123345970 123345970 C T HIP1R Missense_Mutation p.A1023V 0.09 tolerated(0.27) benign(0.017) TCGA-AA-3947-01 12 123414591 123414591 G A ABCB9 Missense_Mutation p.T723I 0.13 deleterious(0.01) benign(0.197) TCGA-AA-3947-01 12 123463531 123463531 G A OGFOD2 Missense_Mutation p.A195T 0.37 tolerated(0.2) benign(0.003) TCGA-AA-3947-01 12 123641297 123641297 T C MPHOSPH9 3'UTR 0.67 TCGA-AA-3947-01 12 123920682 123920682 G A RILPL2 Missense_Mutation p.L96F 0.09 deleterious(0) probably_damaging(0.971) TCGA-AA-3947-01 12 124192187 124192187 T G TCTN2 Missense_Mutation p.L674R 0.35 deleterious(0) possibly_damaging(0.786) TCGA-AA-3947-01 12 124220121 124220121 C T ATP6V0A2 Missense_Mutation p.R259W 0.33 deleterious(0) probably_damaging(0.961) TCGA-AA-3947-01 12 124399545 124399545 G A DNAH10 Missense_Mutation p.R3456Q 0.39 benign(0.298) TCGA-AA-3947-01 12 124401125 124401125 A - DNAH10 Frame_Shift_Del p.N3499Ifs*2 0.11 TCGA-AA-3947-01 12 124422260 124422260 G A CCDC92 Missense_Mutation p.A114V 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-AA-3947-01 12 124832801 124832801 G - NCOR2 Frame_Shift_Del p.H1302Mfs*12 0.26 TCGA-AA-3947-01 12 125451349 125451349 G A DHX37 Missense_Mutation p.A527V 0.05 tolerated(0.28) benign(0.037) TCGA-AA-3947-01 12 12977586 12977586 A G DDX47 Missense_Mutation p.N337S 0.08 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 12 130184472 130184472 A C TMEM132D Missense_Mutation p.L284R 0.35 deleterious(0) possibly_damaging(0.586) TCGA-AA-3947-01 12 130649159 130649159 A - FZD10 Frame_Shift_Del p.A560Pfs*36 0.21 TCGA-AA-3947-01 12 130926475 130926475 T G RIMBP2 Missense_Mutation p.K457N 0.39 deleterious(0) benign(0.347) TCGA-AA-3947-01 12 132241092 132241092 G A SFSWAP Silent p.A541A 0.49 TCGA-AA-3947-01 12 132404022 132404022 C T ULK1 Missense_Mutation p.A897V 0.32 tolerated(0.51) probably_damaging(0.998) TCGA-AA-3947-01 12 132683771 132683771 G A GALNT9 Missense_Mutation p.A116V 0.25 tolerated(0.09) benign(0.015) TCGA-AA-3947-01 12 133351737 133351737 G A GOLGA3 Missense_Mutation p.A1378V 0.14 tolerated(0.3) benign(0.003) TCGA-AA-3947-01 12 13364395 13364427 CTTTTCAGAACTCTCTTTGCTCACAAGTTACCA TCTTTTCAGAACTCTCTTTGCTCACAAGTTACC EMP1 Splice_Site 0.09 TCGA-AA-3947-01 12 13715633 13715633 C - GRIN2B 3'UTR 0.16 TCGA-AA-3947-01 12 14613682 14613682 T C ATF7IP Silent p.T804T 0.23 TCGA-AA-3947-01 12 14650995 14650995 C A ATF7IP Silent p.T1267T 0.39 TCGA-AA-3947-01 12 14923891 14923891 C - HIST4H4 Frame_Shift_Del p.G43Afs*24 0.29 TCGA-AA-3947-01 12 18434942 18434942 A C PIK3C2G 5'UTR 0.07 TCGA-AA-3947-01 12 21713339 21713339 C T GYS2 Missense_Mutation p.A384T 0.20 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 12 22677557 22677557 C T C2CD5 Silent p.T150T 0.42 TCGA-AA-3947-01 12 24737092 24737092 A G LINC00477 RNA 0.37 TCGA-AA-3947-01 12 2614109 2614109 C T CACNA1C Silent p.S405S 0.40 TCGA-AA-3947-01 12 2621995 2621995 G T CACNA1C Missense_Mutation p.R412M 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 12 26868309 26868310 - T ITPR2 Frame_Shift_Ins p.Q260Tfs*18 0.20 TCGA-AA-3947-01 12 27129234 27129234 C T TM7SF3 Missense_Mutation p.A416T 0.07 tolerated(0.4) benign(0.052) TCGA-AA-3947-01 12 2760900 2760900 G A CACNA1C Missense_Mutation p.R1395Q 0.39 deleterious(0.01) possibly_damaging(0.799) TCGA-AA-3947-01 12 27916160 27916160 C T MANSC4 Silent p.T178T 0.08 TCGA-AA-3947-01 12 29423429 29423429 C T FAR2 Missense_Mutation p.T16M 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 12 31600513 31600513 C T DENND5B Missense_Mutation p.R607Q 0.46 deleterious(0.04) possibly_damaging(0.797) TCGA-AA-3947-01 12 39724054 39724054 G A KIF21A Silent p.S1110S 0.37 TCGA-AA-3947-01 12 40758799 40758799 G A LRRK2 Missense_Mutation p.R2446H 0.33 tolerated(0.18) benign(0.007) TCGA-AA-3947-01 12 40925451 40925451 T G MUC19 Intron 0.32 TCGA-AA-3947-01 12 40925872 40925872 A C MUC19 Intron 0.07 TCGA-AA-3947-01 12 41967580 41967580 A T PDZRN4 Missense_Mutation p.N1000I 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 12 42481490 42481490 T C GXYLT1 3'UTR 0.52 TCGA-AA-3947-01 12 42481686 42481686 T - GXYLT1 Frame_Shift_Del p.T409Qfs*17 0.26 TCGA-AA-3947-01 12 42631451 42631451 G A YAF2 Silent p.A34A 0.12 TCGA-AA-3947-01 12 42792658 42792658 G A PPHLN1 Silent p.A257A 0.40 TCGA-AA-3947-01 12 43945028 43945028 T G ADAMTS20 Missense_Mutation p.E46A 0.17 tolerated(0.65) benign(0.002) TCGA-AA-3947-01 12 47472644 47472644 C T AMIGO2 Missense_Mutation p.A48T 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 12 48131818 48131818 C T RAPGEF3 Silent p.A880A 0.41 TCGA-AA-3947-01 12 49176725 49176725 C A ADCY6 Missense_Mutation p.V165L 0.36 tolerated(0.23) benign(0.327) TCGA-AA-3947-01 12 49374347 49374348 - G WNT1 Frame_Shift_Ins p.C170Lfs*6 0.32 TCGA-AA-3947-01 12 49398782 49398782 G T PRKAG1 Silent p.S134S 0.37 TCGA-AA-3947-01 12 49949694 49949694 C - KCNH3 Frame_Shift_Del p.M812Cfs*9 0.11 TCGA-AA-3947-01 12 5020763 5020763 C T KCNA1 Silent p.F73F 0.38 TCGA-AA-3947-01 12 5021006 5021006 G A KCNA1 Nonsense_Mutation p.W154* 0.39 TCGA-AA-3947-01 12 5022174 5022174 C T KCNA1 3'UTR 0.13 TCGA-AA-3947-01 12 5025972 5025973 - T KCNA1 3'UTR 0.33 TCGA-AA-3947-01 12 50349249 50349249 C T AQP2 Missense_Mutation p.P225L 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 12 52078073 52078073 A G SCN8A Missense_Mutation p.H131R 0.47 deleterious(0) probably_damaging(0.962) TCGA-AA-3947-01 12 52200945 52200945 G A SCN8A Missense_Mutation p.R1892H 0.10 tolerated(0.08) probably_damaging(0.999) TCGA-AA-3947-01 12 52369123 52369124 - T ACVR1B Frame_Shift_Ins p.N58Qfs*42 0.14 TCGA-AA-3947-01 12 52374795 52374795 T - ACVR1B Frame_Shift_Del p.L209Yfs*25 0.26 TCGA-AA-3947-01 12 52374874 52374874 A C ACVR1B Missense_Mutation p.K234N 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 12 52939354 52939354 C A KRT71 Missense_Mutation p.S452I 0.15 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 12 53298778 53298778 A C KRT8 Silent p.T24T 0.14 TCGA-AA-3947-01 12 53723095 53723095 G A SP7 Missense_Mutation p.T44I 0.39 tolerated(0.2) benign(0.003) TCGA-AA-3947-01 12 54348768 54348768 C T HOXC12 Missense_Mutation p.H19Y 0.35 tolerated(0.06) probably_damaging(0.99) TCGA-AA-3947-01 12 54383183 54383183 C A HOXC10 Silent p.R328R 0.07 TCGA-AA-3947-01 12 55026028 55026028 G - LACRT Frame_Shift_Del p.L84* 0.14 TCGA-AA-3947-01 12 55039010 55039010 C - DCD Frame_Shift_Del p.G79Dfs*5 0.29 TCGA-AA-3947-01 12 55863816 55863816 C T OR6C70 Missense_Mutation p.S36N 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-AA-3947-01 12 56031446 56031446 C T OR10P1 Silent p.S257S 0.34 TCGA-AA-3947-01 12 56101370 56101370 C T ITGA7 Missense_Mutation p.A33T 0.39 tolerated(0.07) probably_damaging(0.999) TCGA-AA-3947-01 12 56492680 56492680 A C ERBB3 Missense_Mutation p.M944L 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3947-01 12 56505301 56505302 - A PA2G4 Frame_Shift_Ins p.K373Efs*19 0.35 TCGA-AA-3947-01 12 56600309 56600309 C T RNF41 Silent p.E292E 0.10 TCGA-AA-3947-01 12 56749969 56749969 G T STAT2 Missense_Mutation p.P78T 0.27 tolerated(0.15) benign(0.014) TCGA-AA-3947-01 12 57587393 57587393 C T LRP1 Missense_Mutation p.R2577C 0.16 probably_damaging(1) TCGA-AA-3947-01 12 57630876 57630876 T - NDUFA4L2 5'UTR 0.19 TCGA-AA-3947-01 12 57660588 57660588 G - R3HDM2 Frame_Shift_Del p.P672Lfs*34 0.15 TCGA-AA-3947-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.26 TCGA-AA-3947-01 12 58002944 58002944 G A DTX3 3'UTR 0.40 TCGA-AA-3947-01 12 58018343 58018343 G A SLC26A10 Intron 0.39 TCGA-AA-3947-01 12 58121322 58121322 G T AGAP2-AS1 Missense_Mutation p.D183Y 0.41 probably_damaging(0.963) TCGA-AA-3947-01 12 58200173 58200173 A G AVIL Silent p.T547T 0.12 TCGA-AA-3947-01 12 6436491 6436491 T C PLEKHG6 Missense_Mutation p.V581A 0.18 tolerated(0.56) benign(0.008) TCGA-AA-3947-01 12 64521873 64521873 G A SRGAP1 Missense_Mutation p.D925N 0.26 deleterious(0.01) benign(0.139) TCGA-AA-3947-01 12 6457085 6457085 C T SCNN1A Missense_Mutation p.G714D 0.08 tolerated_low_confidence(0.15) probably_damaging(0.969) TCGA-AA-3947-01 12 6632004 6632004 G T NCAPD2 Missense_Mutation p.E655D 0.06 deleterious(0.02) possibly_damaging(0.728) TCGA-AA-3947-01 12 6669736 6669736 C A NOP2 Splice_Site p.X513_splice 0.26 TCGA-AA-3947-01 12 66731839 66731839 T C HELB Missense_Mutation p.I1074T 0.31 tolerated(1) benign(0.001) TCGA-AA-3947-01 12 66814498 66814498 A G GRIP1 Splice_Site p.X561_splice 0.10 TCGA-AA-3947-01 12 6730595 6730595 G T LPAR5 5'UTR 0.20 TCGA-AA-3947-01 12 6882418 6882418 C T LAG3 Missense_Mutation p.A40V 0.28 tolerated(0.39) benign(0.012) TCGA-AA-3947-01 12 6970186 6970186 C A USP5 Missense_Mutation p.L472M 0.29 tolerated(0.24) possibly_damaging(0.903) TCGA-AA-3947-01 12 7025671 7025671 G A ENO2 Missense_Mutation p.G59D 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3947-01 12 7125754 7125754 C - LPCAT3 5'UTR 0.13 TCGA-AA-3947-01 12 72290507 72290507 T - TBC1D15 Frame_Shift_Del p.W365Gfs*22 0.25 TCGA-AA-3947-01 12 75720300 75720300 G A CAPS2 Silent p.C12C 0.39 TCGA-AA-3947-01 12 75900357 75900357 A G KRR1 Silent p.C142C 0.43 TCGA-AA-3947-01 12 7635310 7635310 A G CD163 Missense_Mutation p.V1059A 0.09 tolerated(0.27) benign(0.001) TCGA-AA-3947-01 12 7636248 7636248 G A CD163 Missense_Mutation p.P935S 0.17 tolerated(0.14) benign(0.006) TCGA-AA-3947-01 12 76791624 76791624 C T OSBPL8 Silent p.G174G 0.11 TCGA-AA-3947-01 12 77259999 77259999 C T CSRP2 Silent p.G14G 0.08 TCGA-AA-3947-01 12 8085631 8085631 C - SLC2A3 Frame_Shift_Del p.G74Vfs*2 0.13 TCGA-AA-3947-01 12 80890208 80890208 T C PTPRQ Silent p.L720L 0.40 TCGA-AA-3947-01 12 81101662 81101662 A G MYF6 Missense_Mutation p.D55G 0.17 tolerated(0.23) possibly_damaging(0.492) TCGA-AA-3947-01 12 81102749 81102749 C T MYF6 3'UTR 0.36 TCGA-AA-3947-01 12 82147828 82147828 A C PPFIA2 Missense_Mutation p.L58R 0.08 tolerated(0.39) possibly_damaging(0.481) TCGA-AA-3947-01 12 83324294 83324294 G A TMTC2 Missense_Mutation p.R523H 0.12 deleterious(0) benign(0.377) TCGA-AA-3947-01 12 85260839 85260839 A G SLC6A15 Silent p.A543A 0.38 TCGA-AA-3947-01 12 85270339 85270339 G A SLC6A15 Silent p.F268F 0.16 TCGA-AA-3947-01 12 85517951 85517951 A T LRRIQ1 Missense_Mutation p.T1221S 0.18 tolerated(0.86) benign(0) TCGA-AA-3947-01 12 86199476 86199477 - C RASSF9 Frame_Shift_Ins p.D105Rfs*2 0.28 TCGA-AA-3947-01 12 86373216 86373216 A C MGAT4C Missense_Mutation p.L430V 0.09 tolerated(0.48) benign(0) TCGA-AA-3947-01 12 8666266 8666266 G - CLEC4D 5'UTR 0.18 TCGA-AA-3947-01 12 88900895 88900896 - G KITLG Frame_Shift_Ins p.G209Wfs*41 0.27 TCGA-AA-3947-01 12 90015377 90015377 G T ATP2B1 Silent p.S512S 0.16 TCGA-AA-3947-01 12 91449970 91449970 T C KERA Missense_Mutation p.H30R 0.37 tolerated(0.36) benign(0) TCGA-AA-3947-01 12 93170685 93170685 C T EEA1 Missense_Mutation p.A1350T 0.24 tolerated(0.18) benign(0.065) TCGA-AA-3947-01 12 94976064 94976064 C T TMCC3 Missense_Mutation p.R110H 0.41 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 12 95603820 95603820 T - FGD6 Frame_Shift_Del p.M414Wfs*11 0.20 TCGA-AA-3947-01 12 95604775 95604775 A G FGD6 Silent p.C95C 0.37 TCGA-AA-3947-01 12 95906601 95906603 ACC CA METAP2 Frame_Shift_Del p.T365Hfs*20 0.24 TCGA-AA-3947-01 12 96389664 96389664 G A HAL Missense_Mutation p.R9C 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.836) TCGA-AA-3947-01 13 101257130 101257130 A - TMTC4 3'UTR 0.41 TCGA-AA-3947-01 13 103397367 103397367 C A LINC00283 RNA 0.39 TCGA-AA-3947-01 13 103459564 103459564 A G BIVM 5'UTR 0.33 TCGA-AA-3947-01 13 103528097 103528097 A G ERCC5 Silent p.E1135E 0.32 TCGA-AA-3947-01 13 108862667 108862667 T C LIG4 Missense_Mutation p.N317S 0.09 tolerated(0.28) benign(0.003) TCGA-AA-3947-01 13 108886239 108886239 A - ABHD13 3'UTR 0.24 TCGA-AA-3947-01 13 110838732 110838732 C A COL4A1 Missense_Mutation p.G633C 0.23 probably_damaging(0.965) TCGA-AA-3947-01 13 111290685 111290685 G A CARKD Silent p.T330T 0.15 TCGA-AA-3947-01 13 111980632 111980632 C T TEX29 Missense_Mutation p.A54V 0.38 tolerated(0.08) possibly_damaging(0.695) TCGA-AA-3947-01 13 112723372 112723372 C T SOX1 3'UTR 0.08 TCGA-AA-3947-01 13 113223520 113223520 C T TUBGCP3 Missense_Mutation p.A44T 0.07 tolerated(0.11) benign(0.079) TCGA-AA-3947-01 13 113724384 113724384 A G MCF2L Missense_Mutation p.Q298R 0.26 deleterious(0) benign(0.167) TCGA-AA-3947-01 13 114307230 114307230 G A ATP4B Silent p.G171G 0.37 TCGA-AA-3947-01 13 114762191 114762191 G A RASA3 Missense_Mutation p.R653C 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 13 19752399 19752399 C T TUBA3C Missense_Mutation p.R121Q 0.06 tolerated_low_confidence(0.08) benign(0.01) TCGA-AA-3947-01 13 19997104 19997104 C T TPTE2 3'UTR 0.44 TCGA-AA-3947-01 13 20024243 20024243 C T TPTE2 Missense_Mutation p.V316I 0.43 tolerated(1) benign(0.02) TCGA-AA-3947-01 13 20056655 20056655 T C TPTE2 Missense_Mutation p.E51G 0.10 tolerated(0.14) benign(0.001) TCGA-AA-3947-01 13 20056687 20056687 A T TPTE2 Missense_Mutation p.S40R 0.17 tolerated_low_confidence(0.07) benign(0.002) TCGA-AA-3947-01 13 21987888 21987888 C A ZDHHC20 Missense_Mutation p.K91N 0.39 deleterious(0.03) possibly_damaging(0.862) TCGA-AA-3947-01 13 23905530 23905530 G A SACS Missense_Mutation p.A4162V 0.39 benign(0.156) TCGA-AA-3947-01 13 23929928 23929928 G T SACS Missense_Mutation p.L275I 0.38 probably_damaging(0.992) TCGA-AA-3947-01 13 24868997 24868997 G T SPATA13 Silent p.V1067V 0.27 TCGA-AA-3947-01 13 25283890 25283890 G A ATP12A Missense_Mutation p.R902H 0.20 tolerated(0.56) benign(0.001) TCGA-AA-3947-01 13 25439048 25439048 A G RNF17 Missense_Mutation p.H1338R 0.32 tolerated(0.11) possibly_damaging(0.507) TCGA-AA-3947-01 13 25744780 25744780 G A AMER2 Silent p.P326P 0.45 TCGA-AA-3947-01 13 25840347 25840347 T C MTMR6 Missense_Mutation p.I128V 0.06 tolerated(0.26) benign(0.005) TCGA-AA-3947-01 13 26911728 26911728 A - CDK8 Frame_Shift_Del p.K52Nfs*3 0.09 TCGA-AA-3947-01 13 28008962 28008962 T C GTF3A Missense_Mutation p.C222R 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 13 31732974 31732974 T - HSPH1 Frame_Shift_Del p.N45Ifs*43 0.30 TCGA-AA-3947-01 13 32805408 32805408 T A FRY Missense_Mutation p.V1833D 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 13 32811688 32811688 T A FRY Missense_Mutation p.S1995T 0.31 tolerated(0.1) benign(0.248) TCGA-AA-3947-01 13 32937321 32937321 A T BRCA2 Missense_Mutation p.D2661V 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 13 32972538 32972538 G T BRCA2 Missense_Mutation p.K3296N 0.04 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 13 36686022 36686022 G A DCLK1 Missense_Mutation p.T236M 0.39 deleterious(0) unknown(0) TCGA-AA-3947-01 13 36686179 36686179 G A DCLK1 Missense_Mutation p.R184W 0.38 deleterious(0) unknown(0) TCGA-AA-3947-01 13 36905624 36905624 A G SPG20 Missense_Mutation p.V307A 0.38 deleterious(0.03) possibly_damaging(0.677) TCGA-AA-3947-01 13 37006802 37006802 T C CCNA1 Missense_Mutation p.I15T 0.20 deleterious_low_confidence(0.01) benign(0) TCGA-AA-3947-01 13 37270908 37270908 A G SERTM1 3'UTR 0.14 TCGA-AA-3947-01 13 37679723 37679723 T G CSNK1A1L 5'UTR 0.26 TCGA-AA-3947-01 13 39450493 39450493 T C FREM2 Missense_Mutation p.F2840L 0.38 deleterious(0.01) benign(0.193) TCGA-AA-3947-01 13 39605738 39605738 C A PROSER1 Missense_Mutation p.A48S 0.07 deleterious(0) probably_damaging(0.995) TCGA-AA-3947-01 13 41800661 41800662 - T MTRF1 Frame_Shift_Ins p.N344Kfs*2 0.25 TCGA-AA-3947-01 13 42783190 42783190 G A DGKH Silent p.Q899Q 0.36 TCGA-AA-3947-01 13 42877776 42877776 A T AKAP11 Missense_Mutation p.I1632F 0.06 deleterious(0.01) possibly_damaging(0.887) TCGA-AA-3947-01 13 45149331 45149331 G A TSC22D1 Missense_Mutation p.R294C 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3947-01 13 46549942 46549942 C A ZC3H13 Missense_Mutation p.Q648H 0.19 probably_damaging(0.995) TCGA-AA-3947-01 13 46701726 46701726 T G LCP1 Nonstop_Mutation p.*628Cext*14 0.15 TCGA-AA-3947-01 13 46787238 46787239 - A LRRC63 Frame_Shift_Ins p.T26Nfs*5 0.15 TCGA-AA-3947-01 13 49282478 49282478 T C CYSLTR2 3'UTR 0.19 TCGA-AA-3947-01 13 50592002 50592002 C T TRIM13 3'Flank 0.38 TCGA-AA-3947-01 13 51594696 51594696 C A GUCY1B2 RNA 0.13 TCGA-AA-3947-01 13 52293457 52293457 G A WDFY2 Missense_Mutation p.R153Q 0.09 tolerated(0.39) benign(0.166) TCGA-AA-3947-01 13 52516578 52516578 G T ATP7B Missense_Mutation p.P1119H 0.43 tolerated(0.22) possibly_damaging(0.485) TCGA-AA-3947-01 13 53418534 53418534 G A PCDH8 3'UTR 0.42 TCGA-AA-3947-01 13 58208322 58208322 T C PCDH17 Missense_Mutation p.F548L 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 13 58208642 58208642 C T PCDH17 Silent p.D654D 0.22 TCGA-AA-3947-01 13 61987430 61987430 G A PCDH20 Missense_Mutation p.R268C 0.22 deleterious(0.01) probably_damaging(0.959) TCGA-AA-3947-01 13 77742582 77742582 G A MYCBP2 Missense_Mutation p.A1994V 0.18 probably_damaging(0.986) TCGA-AA-3947-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.17 TCGA-AA-3947-01 13 78492479 78492479 G A EDNRB Missense_Mutation p.T167M 0.43 deleterious(0.04) benign(0.024) TCGA-AA-3947-01 13 79916878 79916878 T - RBM26 Frame_Shift_Del p.N756Ifs*5 0.10 TCGA-AA-3947-01 13 84455509 84455509 T - SLITRK1 Frame_Shift_Del p.K45Rfs*64 0.21 TCGA-AA-3947-01 13 88329928 88329928 A G SLITRK5 Missense_Mutation p.N762S 0.10 deleterious(0.03) possibly_damaging(0.77) TCGA-AA-3947-01 13 96237160 96237160 G A DZIP1 Missense_Mutation p.A785V 0.06 tolerated(0.14) benign(0.004) TCGA-AA-3947-01 13 99061770 99061770 C T FARP1 Silent p.G531G 0.22 TCGA-AA-3947-01 13 99452703 99452703 G A DOCK9 Missense_Mutation p.R1933C 0.06 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 14 102384282 102384282 C T PPP2R5C Nonsense_Mutation p.Q512* 0.38 TCGA-AA-3947-01 14 103336612 103336612 G T TRAF3 Missense_Mutation p.R25L 0.34 tolerated(0.25) benign(0.156) TCGA-AA-3947-01 14 103447237 103447237 T - CDC42BPB Frame_Shift_Del p.K338Sfs*8 0.26 TCGA-AA-3947-01 14 105406342 105406343 - C AHNAK2 Frame_Shift_Ins p.E5149Gfs*8 0.24 TCGA-AA-3947-01 14 105615608 105615608 C T JAG2 Missense_Mutation p.C551Y 0.10 deleterious(0) possibly_damaging(0.794) TCGA-AA-3947-01 14 105945480 105945480 T C CRIP2 Missense_Mutation p.L216P 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 14 106091335 106091335 T C IGHG4 Missense_Mutation p.T187A 0.75 tolerated(0.11) benign(0) TCGA-AA-3947-01 14 106303301 106303301 C T IGHD 3'UTR 0.44 TCGA-AA-3947-01 14 106359544 106378260 14:106359544-106378260 - IGHD2-15 large deletion 0.26 TCGA-AA-3947-01 14 106829697 106829697 A C IGHV4-34 Missense_Mutation p.L89R 0.10 deleterious(0) probably_damaging(0.973) TCGA-AA-3947-01 14 107034985 107034985 T - IGHV5-51 Frame_Shift_Del p.K32Sfs*6 0.16 TCGA-AA-3947-01 14 107113987 107113987 C - IGHV3-64 Frame_Shift_Del p.S37Pfs*2 0.10 TCGA-AA-3947-01 14 20389150 20389150 C T OR4K5 Missense_Mutation p.P129S 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 14 20840909 20840909 C T TEP1 Silent p.S2353S 0.42 TCGA-AA-3947-01 14 20876271 20876271 G A TEP1 Missense_Mutation p.R110W 0.39 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-AA-3947-01 14 21168090 21168090 T - RNASE4 3'UTR 0.28 TCGA-AA-3947-01 14 21511542 21511542 G A RNASE7 Missense_Mutation p.V131I 0.35 tolerated(1) benign(0.001) TCGA-AA-3947-01 14 21556192 21556192 C - ARHGEF40 Frame_Shift_Del p.H1487Tfs*15 0.28 TCGA-AA-3947-01 14 21860938 21860938 C T CHD8 Missense_Mutation p.V2167I 0.31 tolerated(1) benign(0) TCGA-AA-3947-01 14 21862073 21862073 G A CHD8 Missense_Mutation p.R1961C 0.40 deleterious(0.01) possibly_damaging(0.759) TCGA-AA-3947-01 14 21992735 21992735 C T SALL2 Missense_Mutation p.R376H 0.24 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 14 23240753 23240753 G A OXA1L Missense_Mutation p.D492N 0.35 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-AA-3947-01 14 23355274 23355274 C T REM2 Silent p.T187T 0.24 TCGA-AA-3947-01 14 23521735 23521736 - G CDH24 Frame_Shift_Ins p.L437Pfs*35 0.26 TCGA-AA-3947-01 14 23894567 23894567 G A MYH7 Missense_Mutation p.R783C 0.14 deleterious(0) possibly_damaging(0.815) TCGA-AA-3947-01 14 24041120 24041120 G A JPH4 Silent p.D387D 0.42 TCGA-AA-3947-01 14 24108490 24108490 G - DHRS2 Frame_Shift_Del p.E83Rfs*3 0.30 TCGA-AA-3947-01 14 24528350 24528350 G A LRRC16B Silent p.L526L 0.39 TCGA-AA-3947-01 14 24529420 24529420 G A LRRC16B Missense_Mutation p.A673T 0.15 deleterious(0.01) probably_damaging(0.94) TCGA-AA-3947-01 14 24644801 24644801 C A REC8 Missense_Mutation p.P171H 0.33 deleterious(0.01) possibly_damaging(0.8) TCGA-AA-3947-01 14 24793300 24793300 G T ADCY4 Missense_Mutation p.L672I 0.45 tolerated(0.34) benign(0.286) TCGA-AA-3947-01 14 24793388 24793388 G A ADCY4 Silent p.G642G 0.09 TCGA-AA-3947-01 14 24800480 24800480 T C ADCY4 Missense_Mutation p.Q251R 0.19 tolerated(0.32) benign(0.033) TCGA-AA-3947-01 14 24802106 24802106 T C ADCY4 Missense_Mutation p.Q83R 0.30 tolerated(0.36) benign(0) TCGA-AA-3947-01 14 24846925 24846925 T C NFATC4 3'UTR 0.10 TCGA-AA-3947-01 14 24877186 24877186 T G NYNRIN Missense_Mutation p.W104G 0.12 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AA-3947-01 14 24877358 24877358 G A NYNRIN Missense_Mutation p.R161Q 0.69 deleterious_low_confidence(0.04) benign(0.067) TCGA-AA-3947-01 14 24885302 24885302 C A NYNRIN Silent p.A1449A 0.41 TCGA-AA-3947-01 14 24911367 24911367 T G SDR39U1 Intron 0.11 TCGA-AA-3947-01 14 27066542 27066542 G - NOVA1 Frame_Shift_Del p.P34Lfs*19 0.32 TCGA-AA-3947-01 14 31562122 31562122 A G AP4S1 Missense_Mutation p.N106D 0.05 deleterious(0) benign(0.23) TCGA-AA-3947-01 14 31581750 31581750 C A HECTD1 Splice_Site p.X2051_splice 0.07 TCGA-AA-3947-01 14 31582339 31582339 T - HECTD1 Frame_Shift_Del p.I2041Lfs*27 0.29 TCGA-AA-3947-01 14 31605847 31605847 G A HECTD1 Missense_Mutation p.R1002W 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 14 35871259 35871259 T C NFKBIA Missense_Mutation p.Y305C 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 14 36302185 36302185 C G BRMS1L Missense_Mutation p.L79V 0.13 deleterious(0.01) probably_damaging(0.98) TCGA-AA-3947-01 14 38680415 38680415 C G SSTR1 3'UTR 0.31 TCGA-AA-3947-01 14 39650091 39650091 T C PNN Missense_Mutation p.V393A 0.06 tolerated_low_confidence(0.75) benign(0.005) TCGA-AA-3947-01 14 39868610 39868610 C T FBXO33 3'UTR 0.14 TCGA-AA-3947-01 14 39870630 39870630 T C FBXO33 Silent p.E382E 0.40 TCGA-AA-3947-01 14 42360818 42360818 C T LRFN5 Missense_Mutation p.T584M 0.46 tolerated(0.11) benign(0.124) TCGA-AA-3947-01 14 45566120 45566120 C A PRPF39 Missense_Mutation p.L161I 0.10 deleterious(0.01) possibly_damaging(0.891) TCGA-AA-3947-01 14 47426727 47426727 A T MDGA2 Missense_Mutation p.L647M 0.10 tolerated(0.22) possibly_damaging(0.87) TCGA-AA-3947-01 14 50472475 50472475 C T C14orf182 Missense_Mutation p.A15T 0.08 tolerated_low_confidence(0.06) possibly_damaging(0.908) TCGA-AA-3947-01 14 51467558 51467558 G A TRIM9 Missense_Mutation p.A436V 0.42 tolerated(0.37) benign(0.001) TCGA-AA-3947-01 14 52473336 52473336 C T NID2 Missense_Mutation p.R1308Q 0.36 deleterious(0) possibly_damaging(0.763) TCGA-AA-3947-01 14 56130759 56130759 G A KTN1 Silent p.K1059K 0.32 TCGA-AA-3947-01 14 57706364 57706364 G A EXOC5 Missense_Mutation p.A160V 0.05 deleterious(0) probably_damaging(0.929) TCGA-AA-3947-01 14 58738593 58738593 T C PSMA3 Missense_Mutation p.S250P 0.37 tolerated(0.13) benign(0.307) TCGA-AA-3947-01 14 59930855 59930855 C G GPR135 Missense_Mutation p.A364P 0.42 tolerated(0.25) benign(0.062) TCGA-AA-3947-01 14 60756575 60756575 G A PPM1A Missense_Mutation p.R408H 0.35 tolerated(0.14) benign(0.001) TCGA-AA-3947-01 14 64468780 64468780 G A SYNE2 Missense_Mutation p.R1256H 0.12 benign(0) TCGA-AA-3947-01 14 64941152 64941153 - A AKAP5 3'UTR 0.19 TCGA-AA-3947-01 14 64990688 64990688 C G ZBTB1 3'UTR 0.05 TCGA-AA-3947-01 14 65008945 65008945 G T HSPA2 Missense_Mutation p.G460C 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3947-01 14 65210036 65210036 C T PLEKHG3 Missense_Mutation p.S1036L 0.33 tolerated(0.1) benign(0.008) TCGA-AA-3947-01 14 65550780 65550781 - C MAX Intron 0.17 TCGA-AA-3947-01 14 68028699 68028699 G A PLEKHH1 Missense_Mutation p.S151N 0.36 tolerated(0.51) benign(0.002) TCGA-AA-3947-01 14 68228112 68228112 G A ZFYVE26 Missense_Mutation p.R2187W 0.40 deleterious(0) probably_damaging(0.987) TCGA-AA-3947-01 14 69521049 69521049 A G DCAF5 Missense_Mutation p.L785P 0.27 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-AA-3947-01 14 71267481 71267481 G A MAP3K9 Silent p.I241I 0.08 TCGA-AA-3947-01 14 74764696 74764696 C A ABCD4 Missense_Mutation p.R121L 0.09 tolerated(0.31) benign(0.009) TCGA-AA-3947-01 14 77719651 77719653 GAG - TMEM63C In_Frame_Del p.E721del 0.37 TCGA-AA-3947-01 14 81610641 81610641 C A TSHR Missense_Mutation p.L747I 0.22 deleterious_low_confidence(0.03) benign(0.264) TCGA-AA-3947-01 14 86087908 86087908 A C FLRT2 Missense_Mutation p.K17T 0.07 tolerated(0.11) benign(0.004) TCGA-AA-3947-01 14 86087996 86087996 T C FLRT2 Silent p.F46F 0.32 TCGA-AA-3947-01 14 88945519 88945519 G T PTPN21 Silent p.A752A 0.13 TCGA-AA-3947-01 14 90863487 90863489 GCG - CALM1 5'UTR 0.19 TCGA-AA-3947-01 14 91779628 91779628 C T CCDC88C Silent p.L844L 0.39 TCGA-AA-3947-01 14 93178024 93178024 C T LGMN Missense_Mutation p.V267I 0.04 deleterious(0.01) possibly_damaging(0.554) TCGA-AA-3947-01 14 93180175 93180175 T C LGMN Missense_Mutation p.Y179C 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 14 95569963 95569963 A G DICER1 Missense_Mutation p.V1257A 0.09 tolerated_low_confidence(0.84) benign(0) TCGA-AA-3947-01 14 95572432 95572432 A C DICER1 Missense_Mutation p.L978R 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 14 95932532 95932532 G A SYNE3 Silent p.A121A 0.28 TCGA-AA-3947-01 14 99642459 99642459 C T BCL11B Silent p.Q238Q 0.38 TCGA-AA-3947-01 15 100672348 100672348 C T ADAMTS17 Missense_Mutation p.A529T 0.15 tolerated(0.09) benign(0.002) TCGA-AA-3947-01 15 101434182 101434182 G T ALDH1A3 Silent p.L187L 0.32 TCGA-AA-3947-01 15 101929722 101929722 G T PCSK6 Silent p.T418T 0.33 TCGA-AA-3947-01 15 22472949 22472949 C T IGHV4OR15-8 Missense_Mutation p.A108T 0.14 deleterious(0.05) benign(0.209) TCGA-AA-3947-01 15 22473116 22473116 T C IGHV4OR15-8 Missense_Mutation p.N52S 0.06 tolerated_low_confidence(0.4) benign(0.004) TCGA-AA-3947-01 15 25963468 25963468 C T ATP10A Missense_Mutation p.R481H 0.42 tolerated(0.12) benign(0.035) TCGA-AA-3947-01 15 27128318 27128318 A G GABRA5 Missense_Mutation p.I72V 0.09 tolerated(1) benign(0.015) TCGA-AA-3947-01 15 28171292 28171292 G A OCA2 Missense_Mutation p.A687V 0.33 deleterious(0) probably_damaging(0.939) TCGA-AA-3947-01 15 28447529 28447529 G T HERC2 Missense_Mutation p.L2482I 0.35 possibly_damaging(0.604) TCGA-AA-3947-01 15 29561225 29561225 G A NDNL2 Nonsense_Mutation p.R229* 0.26 TCGA-AA-3947-01 15 32916428 32916428 G A ARHGAP11A Missense_Mutation p.A118T 0.30 deleterious(0) probably_damaging(0.964) TCGA-AA-3947-01 15 33192314 33192314 C T FMN1 Missense_Mutation p.V951M 0.28 tolerated(0.34) benign(0.004) TCGA-AA-3947-01 15 34628900 34628900 A - SLC12A6 5'UTR 0.26 TCGA-AA-3947-01 15 34659268 34659268 G - LPCAT4 Frame_Shift_Del p.L12* 0.34 TCGA-AA-3947-01 15 39880733 39880733 G A THBS1 Missense_Mutation p.G493E 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 15 40502393 40502393 A C BUB1B Silent p.A789A 0.08 TCGA-AA-3947-01 15 40758371 40758371 G A BAHD1 3'UTR 0.42 TCGA-AA-3947-01 15 41065954 41065954 C T DNAJC17 Missense_Mutation p.V255M 0.23 tolerated(0.23) benign(0.007) TCGA-AA-3947-01 15 41166149 41166149 A G RHOV Silent p.T63T 0.19 TCGA-AA-3947-01 15 41827765 41827765 A G RPAP1 Silent p.A162A 0.18 TCGA-AA-3947-01 15 42067544 42067544 G A MAPKBP1 Missense_Mutation p.R24H 0.44 deleterious(0) probably_damaging(0.972) TCGA-AA-3947-01 15 42116154 42116154 A C MAPKBP1 Missense_Mutation p.S1376R 0.22 tolerated(0.18) benign(0.066) TCGA-AA-3947-01 15 42154420 42154420 C T SPTBN5 Missense_Mutation p.A2486T 0.17 possibly_damaging(0.726) TCGA-AA-3947-01 15 42742266 42742266 G A ZNF106 Missense_Mutation p.S712L 0.38 tolerated(0.13) benign(0.178) TCGA-AA-3947-01 15 43571953 43571953 T C TGM7 Silent p.P516P 0.47 TCGA-AA-3947-01 15 43749142 43749142 G T TP53BP1 Missense_Mutation p.P555H 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3947-01 15 43819892 43819892 G T MAP1A Missense_Mutation p.S2074I 0.10 possibly_damaging(0.857) TCGA-AA-3947-01 15 44887652 44887652 G T SPG11 Silent p.A1480A 0.24 TCGA-AA-3947-01 15 44891016 44891016 A G SPG11 Silent p.N1235N 0.43 TCGA-AA-3947-01 15 45409786 45409786 C T DUOXA1 Missense_Mutation p.R460H 0.07 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-AA-3947-01 15 45454098 45454098 G T DUOX1 Missense_Mutation p.G1340V 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 15 45702722 45702722 A - SPATA5L1 Frame_Shift_Del p.K477Nfs*8 0.29 TCGA-AA-3947-01 15 48064022 48064022 G A SEMA6D 3'UTR 0.41 TCGA-AA-3947-01 15 49090225 49090225 A G CEP152 Silent p.L37L 0.38 TCGA-AA-3947-01 15 49716603 49716603 C G FGF7 Missense_Mutation p.P37A 0.46 tolerated(0.1) benign(0.003) TCGA-AA-3947-01 15 50903457 50903457 C A TRPM7 Missense_Mutation p.A705S 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-AA-3947-01 15 51780297 51780297 T - DMXL2 Frame_Shift_Del p.M1691* 0.09 TCGA-AA-3947-01 15 52404729 52404729 G A BCL2L10 Silent p.S65S 0.48 TCGA-AA-3947-01 15 53809824 53809824 C T WDR72 3'UTR 0.44 TCGA-AA-3947-01 15 54306737 54306737 T G UNC13C Missense_Mutation p.L546R 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3947-01 15 54825260 54825260 A - UNC13C Frame_Shift_Del p.T1899Hfs*2 0.24 TCGA-AA-3947-01 15 55484982 55484982 C T RSL24D1 Missense_Mutation p.R44H 0.10 tolerated(0.05) benign(0.089) TCGA-AA-3947-01 15 56122189 56122189 C T NEDD4 Missense_Mutation p.R1217H 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 15 62214955 62214955 G A VPS13C Missense_Mutation p.P2206S 0.15 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 15 63092572 63092572 T C TLN2 Silent p.V2080V 0.11 TCGA-AA-3947-01 15 63880822 63880822 T C USP3 Intron 0.16 TCGA-AA-3947-01 15 63918296 63918296 G A HERC1 Missense_Mutation p.A4388V 0.11 benign(0.054) TCGA-AA-3947-01 15 64966285 64966285 G - ZNF609 Frame_Shift_Del p.G412Afs*39 0.17 TCGA-AA-3947-01 15 64970406 64970406 G A ZNF609 Missense_Mutation p.R1165H 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3947-01 15 65369151 65369151 G A KBTBD13 5'Flank 0.56 TCGA-AA-3947-01 15 65499138 65499138 G A CILP Missense_Mutation p.R136C 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 15 65677351 65677351 G A IGDCC4 Missense_Mutation p.P1095S 0.55 tolerated(0.16) possibly_damaging(0.722) TCGA-AA-3947-01 15 65962505 65962505 G A DENND4A Missense_Mutation p.R1495W 0.11 deleterious(0.01) possibly_damaging(0.696) TCGA-AA-3947-01 15 68378698 68378698 G A PIAS1 Missense_Mutation p.G27R 0.33 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 15 69113099 69113100 CT - ANP32A 5'UTR 0.33 TCGA-AA-3947-01 15 69331226 69331226 T - NOX5 Frame_Shift_Del p.H470Tfs*10 0.27 TCGA-AA-3947-01 15 71276430 71276430 T C LRRC49 Intron 0.11 TCGA-AA-3947-01 15 72431928 72431928 G A SENP8 5'UTR 0.17 TCGA-AA-3947-01 15 73615394 73615394 C - HCN4 Frame_Shift_Del p.A1014Lfs*4 0.19 TCGA-AA-3947-01 15 73616518 73616518 G A HCN4 Silent p.S685S 0.07 TCGA-AA-3947-01 15 74032630 74032630 C T C15orf59 Silent p.T170T 0.09 TCGA-AA-3947-01 15 74277701 74277701 T G STOML1 Missense_Mutation p.S250R 0.42 tolerated(0.24) benign(0.206) TCGA-AA-3947-01 15 74427694 74427694 G A ISLR2 3'UTR 0.07 TCGA-AA-3947-01 15 74428709 74428709 C T ISLR2 3'UTR 0.22 TCGA-AA-3947-01 15 74467462 74467462 C T ISLR Missense_Mutation p.T88M 0.11 deleterious(0.02) benign(0.01) TCGA-AA-3947-01 15 75105270 75105270 G A LMAN1L Silent p.T25T 0.07 TCGA-AA-3947-01 15 75654700 75654700 C - MAN2C1 Frame_Shift_Del p.G331Afs*17 0.12 TCGA-AA-3947-01 15 75676692 75676692 C T SIN3A Silent p.Q1036Q 0.07 TCGA-AA-3947-01 15 75809640 75809640 A G PTPN9 Missense_Mutation p.F163S 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 15 75980259 75980259 C T CSPG4 Silent p.S1049S 0.23 TCGA-AA-3947-01 15 75980498 75980498 G A CSPG4 Silent p.L970L 0.44 TCGA-AA-3947-01 15 75981159 75981159 C A CSPG4 Missense_Mutation p.Q749H 0.30 tolerated(0.11) benign(0.396) TCGA-AA-3947-01 15 77233993 77233993 A - RCN2 Intron 0.31 TCGA-AA-3947-01 15 77325239 77325239 T C PSTPIP1 Missense_Mutation p.V292A 0.39 tolerated(1) benign(0.001) TCGA-AA-3947-01 15 79217759 79217759 C A CTSH Missense_Mutation p.E241D 0.42 tolerated(0.46) benign(0.002) TCGA-AA-3947-01 15 83455778 83455778 A T FSD2 Missense_Mutation p.L122H 0.50 tolerated(0.12) benign(0.414) TCGA-AA-3947-01 15 84568461 84568461 A G ADAMTSL3 Missense_Mutation p.R560G 0.06 tolerated(0.2) benign(0) TCGA-AA-3947-01 15 84639308 84639308 C T ADAMTSL3 Missense_Mutation p.R855C 0.38 tolerated(0.15) possibly_damaging(0.892) TCGA-AA-3947-01 15 85164147 85164147 G A ZSCAN2 Missense_Mutation p.E241K 0.45 tolerated(0.05) possibly_damaging(0.501) TCGA-AA-3947-01 15 85432067 85432067 C T SLC28A1 Missense_Mutation p.A54V 0.17 tolerated(0.22) benign(0.007) TCGA-AA-3947-01 15 86311521 86311521 C T KLHL25 Silent p.S507S 0.07 TCGA-AA-3947-01 15 86814893 86814893 C T AGBL1 Silent p.G631G 0.08 TCGA-AA-3947-01 15 87066096 87066096 G A AGBL1 Missense_Mutation p.A825T 0.43 deleterious(0.05) benign(0.216) TCGA-AA-3947-01 15 89198655 89198655 C T ISG20 Missense_Mutation p.L147F 0.47 tolerated(0.07) benign(0.001) TCGA-AA-3947-01 15 89837095 89837095 T A FANCI Missense_Mutation p.F775I 0.10 deleterious(0) possibly_damaging(0.835) TCGA-AA-3947-01 15 90347138 90347138 C T ANPEP Silent p.A425A 0.26 TCGA-AA-3947-01 15 90801277 90801277 T C TTLL13 Missense_Mutation p.S315P 0.44 deleterious(0) possibly_damaging(0.535) TCGA-AA-3947-01 15 90802300 90802300 A - TTLL13 3'UTR 0.27 TCGA-AA-3947-01 15 91027453 91027453 C T IQGAP1 Missense_Mutation p.R1264W 0.43 deleterious(0.01) probably_damaging(0.974) TCGA-AA-3947-01 15 91474560 91474560 C T HDDC3 3'UTR 0.21 TCGA-AA-3947-01 15 91488217 91488217 C A UNC45A Missense_Mutation p.L375I 0.39 tolerated(0.09) probably_damaging(0.914) TCGA-AA-3947-01 15 96877678 96877678 C A NR2F2 Silent p.A272A 0.23 TCGA-AA-3947-01 15 99250897 99250897 C T IGF1R Silent p.A67A 0.15 TCGA-AA-3947-01 16 11001150 11001150 C A CIITA Silent p.R601R 0.13 TCGA-AA-3947-01 16 11785637 11785637 G A TXNDC11 Missense_Mutation p.A470V 0.37 deleterious(0.04) possibly_damaging(0.495) TCGA-AA-3947-01 16 11935773 11935773 T - RSL1D1 Frame_Shift_Del p.K240Nfs*9 0.26 TCGA-AA-3947-01 16 1251766 1251766 G A CACNA1H Missense_Mutation p.R439H 0.09 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 16 1262035 1262035 C T CACNA1H Silent p.G1552G 0.06 TCGA-AA-3947-01 16 143252 143254 GTT - NPRL3 In_Frame_Del p.N332del 0.44 TCGA-AA-3947-01 16 1486754 1486754 C T CCDC154 Missense_Mutation p.R459Q 0.25 tolerated(1) benign(0.003) TCGA-AA-3947-01 16 1550418 1550418 G A TELO2 Missense_Mutation p.R358H 0.17 tolerated(0.38) benign(0.004) TCGA-AA-3947-01 16 15814127 15814127 G A MYH11 Missense_Mutation p.R1619C 0.45 probably_damaging(0.976) TCGA-AA-3947-01 16 16235064 16235064 T C ABCC1 Missense_Mutation p.Y1508H 0.39 deleterious(0) benign(0.001) TCGA-AA-3947-01 16 16315658 16315658 C T ABCC6 Missense_Mutation p.A23T 0.46 tolerated(0.67) benign(0) TCGA-AA-3947-01 16 1706039 1706039 G A CRAMP1L Silent p.Q427Q 0.10 TCGA-AA-3947-01 16 18532089 18532089 C T NOMO2 Silent p.A757A 0.28 TCGA-AA-3947-01 16 18827724 18827724 C T SMG1 Missense_Mutation p.C3401Y 0.35 tolerated(0.05) benign(0.129) TCGA-AA-3947-01 16 20386185 20386185 G A PDILT Missense_Mutation p.R214C 0.07 tolerated(0.05) benign(0.091) TCGA-AA-3947-01 16 2051131 2051131 C G ZNF598 Missense_Mutation p.E359Q 0.41 benign(0.068) TCGA-AA-3947-01 16 2051606 2051606 G A ZNF598 Nonsense_Mutation p.R331* 0.39 TCGA-AA-3947-01 16 2051610 2051610 G A ZNF598 Silent p.S329S 0.22 TCGA-AA-3947-01 16 20634874 20634874 C T ACSM1 Silent p.L556L 0.37 TCGA-AA-3947-01 16 20638572 20638572 T A ACSM1 Missense_Mutation p.M456L 0.06 deleterious(0.04) benign(0.007) TCGA-AA-3947-01 16 20809481 20809481 T - ERI2 Frame_Shift_Del p.K547Nfs*19 0.14 TCGA-AA-3947-01 16 20944669 20944669 G T DNAH3 Missense_Mutation p.P4053H 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 16 2115609 2115609 C T TSC2 Silent p.A563A 0.34 TCGA-AA-3947-01 16 21172382 21172382 G A TMEM159 Intron 0.64 TCGA-AA-3947-01 16 2160927 2160927 C G PKD1 Missense_Mutation p.W1414S 0.39 probably_damaging(0.993) TCGA-AA-3947-01 16 2260195 2260195 C T BRICD5 Missense_Mutation p.A90T 0.09 tolerated(1) benign(0.008) TCGA-AA-3947-01 16 2293151 2293151 G A ECI1 Missense_Mutation p.P213L 0.35 tolerated(0.08) benign(0.045) TCGA-AA-3947-01 16 2348433 2348433 A C ABCA3 Missense_Mutation p.L617R 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 16 23486302 23486302 C T GGA2 Missense_Mutation p.G458D 0.06 tolerated(0.31) benign(0.066) TCGA-AA-3947-01 16 23634431 23634431 T C PALB2 Missense_Mutation p.D952G 0.12 tolerated(0.16) benign(0.056) TCGA-AA-3947-01 16 24226061 24226061 G C PRKCB Missense_Mutation p.R649T 0.17 tolerated(0.53) benign(0.002) TCGA-AA-3947-01 16 24788602 24788602 G T TNRC6A Missense_Mutation p.S171I 0.11 deleterious(0.04) benign(0.033) TCGA-AA-3947-01 16 24918417 24918417 G A SLC5A11 Missense_Mutation p.A396T 0.24 deleterious(0.03) possibly_damaging(0.861) TCGA-AA-3947-01 16 25123196 25123196 T G LCMT1 5'UTR 0.07 TCGA-AA-3947-01 16 2521982 2521982 C T NTN3 Missense_Mutation p.R94C 0.32 deleterious(0.01) possibly_damaging(0.904) TCGA-AA-3947-01 16 2548323 2548323 G A TBC1D24 Nonsense_Mutation p.W356* 0.42 TCGA-AA-3947-01 16 2578510 2578510 C T AMDHD2 Missense_Mutation p.T307M 0.36 tolerated(0.05) probably_damaging(0.962) TCGA-AA-3947-01 16 27751921 27751921 G A KIAA0556 Missense_Mutation p.G768D 0.11 tolerated(0.1) benign(0.029) TCGA-AA-3947-01 16 28898509 28898509 G T ATP2A1 Splice_Site p.X182_splice 0.13 TCGA-AA-3947-01 16 28947888 28947888 G A CD19 Missense_Mutation p.V351M 0.30 tolerated(0.1) probably_damaging(0.987) TCGA-AA-3947-01 16 28950039 28950039 C - CD19 Frame_Shift_Del p.Q513Sfs*67 0.27 TCGA-AA-3947-01 16 29127750 29127750 C T RP11-426C22.5 Intron 0.20 TCGA-AA-3947-01 16 29858552 29858552 A C MVP Missense_Mutation p.E767A 0.52 tolerated(0.2) probably_damaging(0.971) TCGA-AA-3947-01 16 29859340 29859340 G T MVP 3'UTR 0.11 TCGA-AA-3947-01 16 30018214 30018214 A G DOC2A Missense_Mutation p.L257P 0.35 deleterious(0.02) possibly_damaging(0.862) TCGA-AA-3947-01 16 30038007 30038007 G A FAM57B Missense_Mutation p.R123C 0.45 deleterious(0) possibly_damaging(0.863) TCGA-AA-3947-01 16 30671712 30671712 G C FBRS Silent p.R196R 0.39 TCGA-AA-3947-01 16 30750247 30750247 C T SRCAP Silent p.S2962S 0.23 TCGA-AA-3947-01 16 30750828 30750828 G A SRCAP Missense_Mutation p.R3156H 0.31 unknown(0) TCGA-AA-3947-01 16 30792983 30792983 A G ZNF629 3'UTR 0.36 TCGA-AA-3947-01 16 30795419 30795419 G - ZNF629 Frame_Shift_Del p.P77Qfs*23 0.40 TCGA-AA-3947-01 16 30980986 30980988 AAG - SETD1A In_Frame_Del p.K999del 0.18 TCGA-AA-3947-01 16 3108907 3108907 G A MMP25 Silent p.Q499Q 0.10 TCGA-AA-3947-01 16 31094786 31094786 A - PRSS53 3'UTR 0.08 TCGA-AA-3947-01 16 31202390 31202390 T C FUS Silent p.G500G 0.33 TCGA-AA-3947-01 16 31228238 31228238 G A PYDC1 Missense_Mutation p.R38C 0.25 deleterious(0) probably_damaging(0.953) TCGA-AA-3947-01 16 31228342 31228342 G A PYDC1 Missense_Mutation p.T3M 0.38 tolerated(0.11) benign(0.019) TCGA-AA-3947-01 16 31343031 31343031 G A ITGAM 3'UTR 0.40 TCGA-AA-3947-01 16 31373161 31373161 G A ITGAX Silent p.T339T 0.39 TCGA-AA-3947-01 16 31418947 31418947 C - ITGAD Frame_Shift_Del p.Q274Rfs*27 0.09 TCGA-AA-3947-01 16 31478078 31478078 G A ARMC5 Silent p.E892E 0.18 TCGA-AA-3947-01 16 315023 315023 G T ITFG3 3'UTR 0.11 TCGA-AA-3947-01 16 31505238 31505238 G A C16orf58 Missense_Mutation p.A241V 0.12 deleterious(0.04) benign(0.032) TCGA-AA-3947-01 16 3165400 3165400 G - ZNF205 Frame_Shift_Del p.E36Rfs*41 0.17 TCGA-AA-3947-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.18 TCGA-AA-3947-01 16 3613145 3613145 G A NLRC3 Missense_Mutation p.P645L 0.52 deleterious(0) benign(0.374) TCGA-AA-3947-01 16 3639048 3639048 G A SLX4 Missense_Mutation p.P1531S 0.34 tolerated(0.58) benign(0.025) TCGA-AA-3947-01 16 3790470 3790470 C T CREBBP Missense_Mutation p.G1355R 0.46 unknown(0) TCGA-AA-3947-01 16 4242101 4242101 C T SRL 3'UTR 0.36 TCGA-AA-3947-01 16 427759 427759 G A TMEM8A Missense_Mutation p.R71C 0.12 deleterious(0) probably_damaging(0.915) TCGA-AA-3947-01 16 4308046 4308046 G - TFAP4 3'UTR 0.21 TCGA-AA-3947-01 16 4457556 4457556 C T CORO7 Missense_Mutation p.A145T 0.35 tolerated(0.68) benign(0.004) TCGA-AA-3947-01 16 46724969 46724969 G T ORC6 Missense_Mutation p.E44D 0.39 tolerated(0.32) possibly_damaging(0.676) TCGA-AA-3947-01 16 46990968 46990968 T C DNAJA2 Silent p.G404G 0.08 TCGA-AA-3947-01 16 47117093 47117093 G A NETO2 3'UTR 0.43 TCGA-AA-3947-01 16 48396479 48396479 A - SIAH1 Intron 0.15 TCGA-AA-3947-01 16 4910662 4910662 C T UBN1 Intron 0.55 TCGA-AA-3947-01 16 50334648 50334648 G A ADCY7 Missense_Mutation p.V367M 0.35 deleterious(0) probably_damaging(0.978) TCGA-AA-3947-01 16 53403426 53403426 A - RP11-44F14.1 RNA 0.13 TCGA-AA-3947-01 16 53499470 53499470 G A RBL2 Missense_Mutation p.E607K 0.06 tolerated(0.17) benign(0.027) TCGA-AA-3947-01 16 53922844 53922844 G T FTO Missense_Mutation p.W407L 0.35 deleterious(0) probably_damaging(0.938) TCGA-AA-3947-01 16 55734144 55734144 G A SLC6A2 Missense_Mutation p.A562T 0.09 tolerated(0.19) possibly_damaging(0.798) TCGA-AA-3947-01 16 57060140 57060140 G A NLRC5 Missense_Mutation p.V429M 0.33 tolerated(0.07) benign(0.235) TCGA-AA-3947-01 16 57101698 57101698 T C NLRC5 Missense_Mutation p.L1486P 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 16 57147337 57147337 C T CPNE2 Silent p.D106D 0.24 TCGA-AA-3947-01 16 57507168 57507168 G A DOK4 3'UTR 0.40 TCGA-AA-3947-01 16 57687227 57687227 C A GPR56 Silent p.P200P 0.35 TCGA-AA-3947-01 16 57713197 57713197 G A GPR97 Missense_Mutation p.V201I 0.39 deleterious(0.05) benign(0.002) TCGA-AA-3947-01 16 57758678 57758678 T C CCDC135 Silent p.H563H 0.17 TCGA-AA-3947-01 16 57760065 57760065 G A CCDC135 Missense_Mutation p.R615H 0.40 tolerated(0.05) benign(0.063) TCGA-AA-3947-01 16 57993866 57993866 C A CNGB1 Missense_Mutation p.E229D 0.04 tolerated_low_confidence(0.2) benign(0.001) TCGA-AA-3947-01 16 58030851 58030851 G A ZNF319 Missense_Mutation p.A440V 0.19 tolerated(0.15) probably_damaging(0.918) TCGA-AA-3947-01 16 58079385 58079385 C T MMP15 3'UTR 0.15 TCGA-AA-3947-01 16 58521731 58521732 - G NDRG4 Frame_Shift_Ins p.Q39Pfs*24 0.26 TCGA-AA-3947-01 16 58622805 58622806 CA - CNOT1 Frame_Shift_Del p.V36Efs*6 0.23 TCGA-AA-3947-01 16 61689414 61689414 G A CDH8 Silent p.G622G 0.46 TCGA-AA-3947-01 16 633162 633162 G A PIGQ Missense_Mutation p.G604D 0.16 deleterious_low_confidence(0) benign(0.336) TCGA-AA-3947-01 16 66757601 66757601 G A DYNC1LI2 3'UTR 0.35 TCGA-AA-3947-01 16 66957496 66957496 C T RRAD Missense_Mutation p.R191Q 0.11 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 16 67116197 67116197 C T CBFB Missense_Mutation p.R161W 0.44 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 16 67218687 67218687 C T EXOC3L1 Silent p.A644A 0.24 TCGA-AA-3947-01 16 67244005 67244005 G A LRRC29 Silent p.H29H 0.46 TCGA-AA-3947-01 16 67977904 67977904 G - LCAT Frame_Shift_Del p.P34Rfs*27 0.10 TCGA-AA-3947-01 16 68390955 68390956 - G PRMT7 Splice_Site p.X638_splice 0.28 TCGA-AA-3947-01 16 69368614 69368614 G T RP11-343C2.12 Missense_Mutation p.T54N 0.11 tolerated(0.52) benign(0.185) TCGA-AA-3947-01 16 70219800 70219800 C T CLEC18C Silent p.C408C 0.19 TCGA-AA-3947-01 16 70288539 70288539 G A AARS Silent p.I795I 0.31 TCGA-AA-3947-01 16 70509358 70509358 T C FUK Missense_Mutation p.L828P 0.36 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 16 710080 710080 G - WDR90 Frame_Shift_Del p.A1071Pfs*40 0.25 TCGA-AA-3947-01 16 711378 711378 G A WDR90 Missense_Mutation p.A1184T 0.43 tolerated(0.13) benign(0.012) TCGA-AA-3947-01 16 71318915 71318915 A G CMTR2 Silent p.P303P 0.11 TCGA-AA-3947-01 16 71510043 71510043 T C ZNF19 Missense_Mutation p.E136G 0.06 tolerated(0.18) benign(0.157) TCGA-AA-3947-01 16 716700 716700 G A WDR90 Missense_Mutation p.A1638T 0.36 deleterious(0) probably_damaging(0.956) TCGA-AA-3947-01 16 71887153 71887153 C - ATXN1L 3'UTR 0.12 TCGA-AA-3947-01 16 71891000 71891000 T - ATXN1L 3'UTR 0.34 TCGA-AA-3947-01 16 720319 720319 A G RHOT2 Missense_Mutation p.I134V 0.11 tolerated(0.08) benign(0.05) TCGA-AA-3947-01 16 72984473 72984473 G A ZFHX3 Silent p.P1037P 0.16 TCGA-AA-3947-01 16 74336156 74336156 C T PSMD7 Missense_Mutation p.T135I 0.40 deleterious(0.03) possibly_damaging(0.528) TCGA-AA-3947-01 16 74444801 74444801 A G CLEC18B Splice_Site p.X372_splice 0.14 TCGA-AA-3947-01 16 75258771 75258771 G A CTRB1 3'UTR 0.50 TCGA-AA-3947-01 16 75512725 75512725 G T CHST6 Silent p.R334R 0.36 TCGA-AA-3947-01 16 75563240 75563240 G A CHST5 Missense_Mutation p.A348V 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 16 75563815 75563815 G T CHST5 Silent p.A156A 0.21 TCGA-AA-3947-01 16 75690558 75690558 A - TERF2IP 3'UTR 0.46 TCGA-AA-3947-01 16 772942 772942 G A CCDC78 Missense_Mutation p.T426M 0.31 tolerated(0.84) unknown(0) TCGA-AA-3947-01 16 77327136 77327136 C T ADAMTS18 Missense_Mutation p.R1009Q 0.49 tolerated(0.16) possibly_damaging(0.791) TCGA-AA-3947-01 16 79633594 79633594 G - MAF Frame_Shift_Del p.P69Lfs*26 0.08 TCGA-AA-3947-01 16 81134589 81134589 T - GCSH 5'Flank 0.50 TCGA-AA-3947-01 16 81973512 81973512 G A PLCG2 Missense_Mutation p.S1110N 0.18 tolerated(1) benign(0.001) TCGA-AA-3947-01 16 822748 822748 C T MSLNL Missense_Mutation p.G787R 0.17 probably_damaging(0.999) TCGA-AA-3947-01 16 83843029 83843029 A C HSBP1 Intron 0.30 TCGA-AA-3947-01 16 839338 839338 C A CHTF18 Missense_Mutation p.L139I 0.35 tolerated(0.39) benign(0.055) TCGA-AA-3947-01 16 84216717 84216717 C G TAF1C Missense_Mutation p.K149N 0.43 tolerated(0.05) benign(0.311) TCGA-AA-3947-01 16 844180 844180 C T CHTF18 Silent p.G643G 0.40 TCGA-AA-3947-01 16 848982 848982 G A GNG13 Silent p.P32P 0.26 TCGA-AA-3947-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.31 TCGA-AA-3947-01 16 85699592 85699592 G A GSE1 Silent p.T923T 0.12 TCGA-AA-3947-01 16 86546652 86546652 G A FOXF1 Silent p.Q367Q 0.34 TCGA-AA-3947-01 16 87637032 87637032 C T JPH3 Missense_Mutation p.R94C 0.09 deleterious(0) probably_damaging(0.995) TCGA-AA-3947-01 16 88502371 88502371 C T ZNF469 Silent p.V2803V 0.44 TCGA-AA-3947-01 16 88792708 88792708 C T PIEZO1 Missense_Mutation p.A1318T 0.40 tolerated(0.16) possibly_damaging(0.74) TCGA-AA-3947-01 16 88880825 88880825 C A GALNS 3'UTR 0.05 TCGA-AA-3947-01 16 88908373 88908373 G A GALNS Missense_Mutation p.A84V 0.41 deleterious(0) probably_damaging(0.991) TCGA-AA-3947-01 16 89866042 89866042 G A FANCA Missense_Mutation p.T266M 0.48 deleterious(0.01) benign(0.01) TCGA-AA-3947-01 16 89921002 89921002 C A SPIRE2 Silent p.P278P 0.36 TCGA-AA-3947-01 16 9857525 9857525 G A GRIN2A Silent p.Y1292Y 0.44 TCGA-AA-3947-01 17 10314105 10314105 G A MYH8 Missense_Mutation p.L526F 0.08 deleterious(0.01) probably_damaging(0.962) TCGA-AA-3947-01 17 10315798 10315798 G A MYH8 Silent p.Y435Y 0.22 TCGA-AA-3947-01 17 11556168 11556168 A - DNAH9 Frame_Shift_Del p.N816Tfs*3 0.22 TCGA-AA-3947-01 17 11778403 11778403 G T DNAH9 Missense_Mutation p.E3460D 0.48 benign(0.111) TCGA-AA-3947-01 17 12832313 12832313 G A ARHGAP44 Missense_Mutation p.A178T 0.34 tolerated(0.44) benign(0.034) TCGA-AA-3947-01 17 15164034 15164036 AGG - PMP22 In_Frame_Del p.L6del 0.18 TCGA-AA-3947-01 17 15878620 15878620 G A ADORA2B Silent p.Q321Q 0.22 TCGA-AA-3947-01 17 16042480 16042480 C T NCOR1 Silent p.R398R 0.10 TCGA-AA-3947-01 17 1637290 1637290 C T WDR81 Silent p.C1653C 0.33 TCGA-AA-3947-01 17 16526202 16526202 T - ZNF624 Frame_Shift_Del p.K666Nfs*130 0.32 TCGA-AA-3947-01 17 18022385 18022385 C T MYO15A Missense_Mutation p.R91C 0.26 probably_damaging(0.992) TCGA-AA-3947-01 17 18025430 18025430 C T MYO15A Missense_Mutation p.R1106W 0.41 unknown(0) TCGA-AA-3947-01 17 18155086 18155086 G A FLII Missense_Mutation p.R431W 0.24 deleterious(0) probably_damaging(0.985) TCGA-AA-3947-01 17 19285573 19285573 G A MAPK7 Missense_Mutation p.A653T 0.42 tolerated(0.57) unknown(0) TCGA-AA-3947-01 17 19285745 19285745 T C MAPK7 Missense_Mutation p.V710A 0.16 deleterious(0) possibly_damaging(0.535) TCGA-AA-3947-01 17 1943065 1943065 C A DPH1 Missense_Mutation p.R238S 0.35 deleterious(0) benign(0.111) TCGA-AA-3947-01 17 21322952 21322952 C A KCNJ12 3'UTR 0.04 TCGA-AA-3947-01 17 21731608 21731608 G A UBBP4 Missense_Mutation p.G228D 0.14 deleterious(0) benign(0.086) TCGA-AA-3947-01 17 2226757 2226757 G C TSR1 3'UTR 0.47 TCGA-AA-3947-01 17 2232665 2232665 G A TSR1 Silent p.A625A 0.46 TCGA-AA-3947-01 17 26669341 26669341 G A TNFAIP1 Missense_Mutation p.R196H 0.15 deleterious(0.03) probably_damaging(0.957) TCGA-AA-3947-01 17 26695973 26695973 C T VTN Missense_Mutation p.G249D 0.42 tolerated(0.13) possibly_damaging(0.539) TCGA-AA-3947-01 17 26906245 26906245 C T SPAG5 Missense_Mutation p.A1011T 0.38 tolerated(0.42) possibly_damaging(0.731) TCGA-AA-3947-01 17 2699768 2699768 C - RAP1GAP2 5'UTR 0.33 TCGA-AA-3947-01 17 27037998 27038001 GGAA - PROCA1 Intron 0.47 TCGA-AA-3947-01 17 27041610 27041610 G T RAB34 3'UTR 0.07 TCGA-AA-3947-01 17 27044307 27044307 G A RAB34 Missense_Mutation p.A50V 0.19 tolerated_low_confidence(0.15) benign(0.001) TCGA-AA-3947-01 17 27075358 27075358 G A TRAF4 Missense_Mutation p.A181T 0.47 tolerated(0.32) benign(0.038) TCGA-AA-3947-01 17 27085804 27085804 C A FAM222B Missense_Mutation p.K391N 0.14 tolerated(0.16) probably_damaging(0.976) TCGA-AA-3947-01 17 27890051 27890051 C T ABHD15 Missense_Mutation p.R312H 0.36 tolerated(0.3) benign(0.022) TCGA-AA-3947-01 17 28011582 28011582 T C SSH2 Missense_Mutation p.S133G 0.38 deleterious(0.03) benign(0.142) TCGA-AA-3947-01 17 28120938 28120938 C A SSH2 Missense_Mutation p.E27D 0.38 tolerated(0.12) probably_damaging(0.996) TCGA-AA-3947-01 17 2929731 2929731 C T RAP1GAP2 Silent p.G651G 0.26 TCGA-AA-3947-01 17 29761063 29761063 C T RAB11FIP4 Silent p.L87L 0.40 TCGA-AA-3947-01 17 29858822 29858822 C A RAB11FIP4 3'UTR 0.50 TCGA-AA-3947-01 17 30216347 30216347 C T UTP6 Missense_Mutation p.R167H 0.13 deleterious(0) probably_damaging(0.972) TCGA-AA-3947-01 17 30814875 30814875 G A CDK5R1 Silent p.T79T 0.41 TCGA-AA-3947-01 17 32953233 32953233 C T TMEM132E Missense_Mutation p.T52M 0.33 deleterious(0.02) probably_damaging(0.955) TCGA-AA-3947-01 17 33331423 33331423 G A LIG3 Silent p.T976T 0.12 TCGA-AA-3947-01 17 33521366 33521366 C A SLC35G3 5'UTR 0.07 TCGA-AA-3947-01 17 33966776 33966776 C T AP2B1 Silent p.T478T 0.16 TCGA-AA-3947-01 17 34862337 34862337 G A MYO19 Silent p.G585G 0.19 TCGA-AA-3947-01 17 36484691 36484691 A G GPR179 Silent p.P1587P 0.20 TCGA-AA-3947-01 17 36623014 36623014 G A ARHGAP23 Missense_Mutation p.A364T 0.41 tolerated(0.44) benign(0.093) TCGA-AA-3947-01 17 36891758 36891758 G A PCGF2 Silent p.S251S 0.34 TCGA-AA-3947-01 17 37107903 37107903 C T FBXO47 Missense_Mutation p.V183I 0.13 deleterious(0.01) possibly_damaging(0.509) TCGA-AA-3947-01 17 37243922 37243922 C T PLXDC1 Missense_Mutation p.R282H 0.35 deleterious(0) probably_damaging(0.975) TCGA-AA-3947-01 17 37566906 37566906 G T MED1 Missense_Mutation p.P523Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 17 37884185 37884185 A G ERBB2 Missense_Mutation p.N1219S 0.34 tolerated(0.1) probably_damaging(0.998) TCGA-AA-3947-01 17 38290691 38290691 A G MSL1 3'UTR 0.31 TCGA-AA-3947-01 17 38911099 38911099 T - KRT25 Frame_Shift_Del p.N142Ifs*41 0.07 TCGA-AA-3947-01 17 38976896 38976896 C T KRT10 Missense_Mutation p.R245H 0.34 tolerated(0.5) benign(0.263) TCGA-AA-3947-01 17 38978257 38978257 C T KRT10 Missense_Mutation p.R194H 0.42 tolerated(0.39) probably_damaging(0.938) TCGA-AA-3947-01 17 39019451 39019451 G A KRT12 Missense_Mutation p.R414W 0.38 tolerated(0.08) probably_damaging(0.989) TCGA-AA-3947-01 17 39115110 39115110 G A KRT39 Missense_Mutation p.R407C 0.24 deleterious(0) benign(0) TCGA-AA-3947-01 17 39122715 39122715 T G KRT39 Missense_Mutation p.S132R 0.05 tolerated(0.09) benign(0.002) TCGA-AA-3947-01 17 39241112 39241112 C T KRTAP4-7 3'UTR 0.41 TCGA-AA-3947-01 17 39241348 39241348 A G KRTAP4-7 3'UTR 0.41 TCGA-AA-3947-01 17 39323973 39323973 C T KRTAP4-3 Missense_Mutation p.R151H 0.49 tolerated(0.06) unknown(0) TCGA-AA-3947-01 17 39661609 39661609 T A KRT13 Missense_Mutation p.Y65F 0.37 tolerated(0.76) unknown(0) TCGA-AA-3947-01 17 39661610 39661610 A G KRT13 Missense_Mutation p.Y65H 0.37 tolerated(0.32) unknown(0) TCGA-AA-3947-01 17 39778741 39778741 G A KRT17 Missense_Mutation p.R180C 0.39 deleterious(0.03) benign(0.014) TCGA-AA-3947-01 17 40695153 40695153 C A NAGLU Missense_Mutation p.R377S 0.08 deleterious(0.02) possibly_damaging(0.57) TCGA-AA-3947-01 17 40934874 40934874 G A WNK4 Silent p.S239S 0.40 TCGA-AA-3947-01 17 41338374 41338374 G T NBR1 Missense_Mutation p.R105S 0.36 tolerated(0.06) benign(0.004) TCGA-AA-3947-01 17 41349100 41349100 C A NBR1 Missense_Mutation p.P668H 0.13 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 17 41349103 41349103 G A NBR1 Missense_Mutation p.C669Y 0.12 tolerated(0.31) benign(0.001) TCGA-AA-3947-01 17 41847025 41847025 G T DUSP3 Silent p.L170L 0.23 TCGA-AA-3947-01 17 42157800 42157801 - G HDAC5 Frame_Shift_Ins p.I933Hfs*24 0.38 TCGA-AA-3947-01 17 42231987 42231987 A G C17orf53 Missense_Mutation p.T506A 0.35 deleterious(0.01) benign(0.228) TCGA-AA-3947-01 17 42337865 42337865 A G SLC4A1 Missense_Mutation p.V131A 0.35 deleterious(0) probably_damaging(0.963) TCGA-AA-3947-01 17 42392559 42392559 C T RUNDC3A Silent p.S222S 0.17 TCGA-AA-3947-01 17 42428921 42428921 G A GRN Missense_Mutation p.V313M 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 17 42461276 42461276 G A ITGA2B Silent p.D328D 0.36 TCGA-AA-3947-01 17 42541864 42541864 G A GPATCH8 Nonsense_Mutation p.Q57* 0.30 TCGA-AA-3947-01 17 42926663 42926663 C T HIGD1B Missense_Mutation p.R48W 0.46 deleterious(0.02) benign(0.025) TCGA-AA-3947-01 17 43101979 43101979 C T DCAKD Missense_Mutation p.R173H 0.43 tolerated(0.62) benign(0.007) TCGA-AA-3947-01 17 43197777 43197777 C T PLCD3 Missense_Mutation p.S200N 0.48 tolerated(0.75) benign(0.012) TCGA-AA-3947-01 17 43323295 43323295 G T FMNL1 Missense_Mutation p.E1015D 0.13 tolerated(0.15) possibly_damaging(0.656) TCGA-AA-3947-01 17 43341989 43341989 G A SPATA32 5'Flank 0.38 TCGA-AA-3947-01 17 4381918 4381918 G A SPNS3 Missense_Mutation p.A389T 0.08 tolerated(0.2) benign(0.418) TCGA-AA-3947-01 17 44109429 44109429 A G KANSL1 Missense_Mutation p.L1025P 0.18 tolerated(0.21) benign(0.003) TCGA-AA-3947-01 17 44828867 44828867 A G NSF Splice_Site p.X682_splice 0.05 TCGA-AA-3947-01 17 45774173 45774173 C G TBKBP1 Missense_Mutation p.Q108E 0.26 deleterious(0.04) benign(0.056) TCGA-AA-3947-01 17 46804205 46804205 G A HOXB13 Missense_Mutation p.R268W 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 17 4685827 4685827 C T TM4SF5 Silent p.F96F 0.37 TCGA-AA-3947-01 17 4688680 4688680 G A VMO1 Missense_Mutation p.R196C 0.38 deleterious(0) possibly_damaging(0.901) TCGA-AA-3947-01 17 4714221 4714221 C - PLD2 Frame_Shift_Del p.R330Gfs*10 0.19 TCGA-AA-3947-01 17 47394555 47394555 T - ZNF652 Frame_Shift_Del p.K178Rfs*4 0.27 TCGA-AA-3947-01 17 47656322 47656322 G A NXPH3 Missense_Mutation p.G140D 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 17 48046988 48046988 C T DLX4 Silent p.G52G 0.39 TCGA-AA-3947-01 17 48051179 48051179 C T DLX4 Missense_Mutation p.P199S 0.10 tolerated(0.08) possibly_damaging(0.503) TCGA-AA-3947-01 17 48226517 48226517 C T PPP1R9B Silent p.A452A 0.54 TCGA-AA-3947-01 17 48356337 48356337 C - TMEM92 Frame_Shift_Del p.P117Hfs*7 0.19 TCGA-AA-3947-01 17 4837373 4837373 A - GP1BA Frame_Shift_Del p.T494Pfs*59 0.27 TCGA-AA-3947-01 17 4837780 4837780 G A GP1BA Silent p.R627R 0.37 TCGA-AA-3947-01 17 48594671 48594671 T C MYCBPAP Silent p.L117L 0.38 TCGA-AA-3947-01 17 48596071 48596071 A C MYCBPAP Missense_Mutation p.Q256P 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3947-01 17 48628879 48628879 G T SPATA20 Missense_Mutation p.M528I 0.12 deleterious(0.05) benign(0.399) TCGA-AA-3947-01 17 4927367 4927368 - C KIF1C Frame_Shift_Ins p.Y1081Ifs*15 0.20 TCGA-AA-3947-01 17 51902011 51902011 A G KIF2B Silent p.R539R 0.38 TCGA-AA-3947-01 17 5322821 5322821 C T NUP88 Silent p.S50S 0.12 TCGA-AA-3947-01 17 53392760 53392760 G T HLF Missense_Mutation p.Q208H 0.13 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 17 5389431 5389431 G A DERL2 Silent p.S17S 0.18 TCGA-AA-3947-01 17 5486062 5486062 C T NLRP1 Missense_Mutation p.A126T 0.06 tolerated_low_confidence(0.57) benign(0.001) TCGA-AA-3947-01 17 54976525 54976525 A G TRIM25 Silent p.H368H 0.34 TCGA-AA-3947-01 17 56396603 56396603 C T BZRAP1 Missense_Mutation p.S516N 0.33 tolerated(0.13) possibly_damaging(0.473) TCGA-AA-3947-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.22 TCGA-AA-3947-01 17 56435815 56435816 - T RNF43 Frame_Shift_Ins p.P441Hfs*2 0.26 TCGA-AA-3947-01 17 57106034 57106034 G A TRIM37 Nonsense_Mutation p.R667* 0.12 TCGA-AA-3947-01 17 59763475 59763475 C T BRIP1 Missense_Mutation p.S876N 0.16 tolerated(0.22) benign(0.126) TCGA-AA-3947-01 17 6023917 6023917 C T WSCD1 Missense_Mutation p.T555M 0.29 tolerated(0.25) probably_damaging(0.973) TCGA-AA-3947-01 17 60754796 60754796 C T MRC2 Silent p.G667G 0.14 TCGA-AA-3947-01 17 60759623 60759623 C T MRC2 Missense_Mutation p.T944I 0.30 deleterious(0.04) benign(0.241) TCGA-AA-3947-01 17 61561835 61561835 C T ACE Silent p.G618G 0.30 TCGA-AA-3947-01 17 61762952 61762952 T C MAP3K3 Splice_Site p.X268_splice 0.06 TCGA-AA-3947-01 17 61901581 61901581 T A FTSJ3 Missense_Mutation p.E339D 0.37 tolerated(0.17) benign(0.241) TCGA-AA-3947-01 17 62018939 62018939 C T SCN4A Missense_Mutation p.C1568Y 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 17 62157036 62157036 T C ERN1 Missense_Mutation p.N90D 0.05 tolerated(0.2) benign(0.058) TCGA-AA-3947-01 17 62499933 62499933 G A DDX5 Silent p.G165G 0.19 TCGA-AA-3947-01 17 62856713 62856713 C A LRRC37A3 Missense_Mutation p.R1184M 0.38 tolerated(0.08) possibly_damaging(0.497) TCGA-AA-3947-01 17 6348464 6348464 G A FAM64A Missense_Mutation p.V12M 0.45 tolerated(0.97) benign(0.049) TCGA-AA-3947-01 17 63532500 63532500 C T AXIN2 Silent p.T693T 0.10 TCGA-AA-3947-01 17 6364730 6364730 C A PITPNM3 Missense_Mutation p.R818L 0.17 deleterious(0.02) probably_damaging(0.966) TCGA-AA-3947-01 17 6483074 6483074 G A KIAA0753 Missense_Mutation p.A966V 0.50 deleterious(0) probably_damaging(0.994) TCGA-AA-3947-01 17 64873500 64873500 C T CACNG5 Missense_Mutation p.A17V 0.39 deleterious(0) probably_damaging(0.944) TCGA-AA-3947-01 17 65026733 65026733 C T CACNG4 Silent p.G199G 0.07 TCGA-AA-3947-01 17 6546437 6546437 A - TXNDC17 3'UTR 0.16 TCGA-AA-3947-01 17 65850113 65850113 T A BPTF Missense_Mutation p.I224N 0.06 possibly_damaging(0.858) TCGA-AA-3947-01 17 65905752 65905752 G A BPTF Missense_Mutation p.R956Q 0.39 benign(0.009) TCGA-AA-3947-01 17 6683787 6683787 C T FBXO39 Silent p.I200I 0.20 TCGA-AA-3947-01 17 67004285 67004285 A - ABCA9 Frame_Shift_Del p.L1080* 0.29 TCGA-AA-3947-01 17 67125837 67125837 T C ABCA6 Missense_Mutation p.T283A 0.21 tolerated(0.9) benign(0.028) TCGA-AA-3947-01 17 67183905 67183905 T C ABCA10 Silent p.A749A 0.10 TCGA-AA-3947-01 17 67305445 67305446 - A ABCA5 Frame_Shift_Ins p.P143Sfs*2 0.36 TCGA-AA-3947-01 17 6927858 6927858 C - BCL6B Frame_Shift_Del p.S183Vfs*20 0.23 TCGA-AA-3947-01 17 7129594 7129594 C - DVL2 Frame_Shift_Del p.A601Qfs*80 0.29 TCGA-AA-3947-01 17 7147542 7147542 C T CTDNEP1 Missense_Mutation p.V233M 0.29 deleterious(0) probably_damaging(0.974) TCGA-AA-3947-01 17 7193799 7193799 C T YBX2 Missense_Mutation p.R172H 0.33 deleterious(0) possibly_damaging(0.522) TCGA-AA-3947-01 17 7221645 7221645 C T NEURL4 Missense_Mutation p.A1299T 0.48 tolerated(0.58) benign(0.001) TCGA-AA-3947-01 17 72840465 72840465 G T GRIN2C Missense_Mutation p.H845N 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 17 7329685 7329685 T C C17orf74 Silent p.R125R 0.28 TCGA-AA-3947-01 17 7358653 7358653 C T CHRNB1 Silent p.P365P 0.17 TCGA-AA-3947-01 17 7366387 7366387 C A ZBTB4 Missense_Mutation p.E638D 0.39 benign(0.001) TCGA-AA-3947-01 17 7367147 7367147 C T ZBTB4 Missense_Mutation p.R385Q 0.33 possibly_damaging(0.602) TCGA-AA-3947-01 17 73933672 73933672 T C FBF1 Silent p.A2A 0.36 TCGA-AA-3947-01 17 74004103 74004103 G T EVPL Missense_Mutation p.T1728N 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 17 74078143 74078144 - G EXOC7 3'Flank 0.28 TCGA-AA-3947-01 17 74135980 74135980 T C FOXJ1 Missense_Mutation p.Q166R 0.32 deleterious(0.01) benign(0.313) TCGA-AA-3947-01 17 7417510 7417510 G A POLR2A 3'UTR 0.39 TCGA-AA-3947-01 17 74328397 74328397 C A PRPSAP1 Missense_Mutation p.R137M 0.14 deleterious(0.02) probably_damaging(0.952) TCGA-AA-3947-01 17 7460624 7460624 C T TNFSF12 Intron 0.30 TCGA-AA-3947-01 17 7495879 7495879 G T FXR2 Missense_Mutation p.R590S 0.10 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-AA-3947-01 17 7640486 7640486 G A DNAH2 Silent p.K360K 0.33 TCGA-AA-3947-01 17 76497294 76497294 G A DNAH17 Missense_Mutation p.R1805W 0.34 probably_damaging(1) TCGA-AA-3947-01 17 76567063 76567063 C T DNAH17 Silent p.L295L 0.49 TCGA-AA-3947-01 17 76993586 76993586 C T CANT1 Missense_Mutation p.R40H 0.09 tolerated(0.3) benign(0.031) TCGA-AA-3947-01 17 7751760 7751760 C T KDM6B Silent p.G718G 0.13 TCGA-AA-3947-01 17 77768449 77768449 A - CBX8 Frame_Shift_Del p.F385Lfs*26 0.30 TCGA-AA-3947-01 17 78237560 78237560 C A RNF213 Missense_Mutation p.P27H 0.42 possibly_damaging(0.546) TCGA-AA-3947-01 17 7832576 7832576 G A KCNAB3 Nonsense_Mutation p.R60* 0.11 TCGA-AA-3947-01 17 78367439 78367439 C T RNF213 3'UTR 0.88 TCGA-AA-3947-01 17 79660570 79660570 C - HGS Frame_Shift_Del p.E236Sfs*3 0.30 TCGA-AA-3947-01 17 79803020 79803020 G A P4HB Silent p.D482D 0.08 TCGA-AA-3947-01 17 7980394 7980394 C T ALOX12B Missense_Mutation p.A397T 0.19 tolerated(1) benign(0.321) TCGA-AA-3947-01 17 7980442 7980442 C T ALOX12B Missense_Mutation p.A381T 0.44 deleterious(0) probably_damaging(0.993) TCGA-AA-3947-01 17 79966930 79966930 C T ASPSCR1 Silent p.P317P 0.30 TCGA-AA-3947-01 17 79987055 79987055 G A LRRC45 Silent p.L465L 0.37 TCGA-AA-3947-01 17 80040796 80040796 G A FASN Missense_Mutation p.R1921W 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 17 80445986 80445986 T C NARF Missense_Mutation p.Y442H 0.08 deleterious(0.03) benign(0.046) TCGA-AA-3947-01 17 80684727 80684727 T C FN3KRP Missense_Mutation p.F204L 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-AA-3947-01 17 80708305 80708305 G C FN3K Missense_Mutation p.D202H 0.11 tolerated(0.08) benign(0.035) TCGA-AA-3947-01 17 80709990 80709990 C A TBCD 5'UTR 0.44 TCGA-AA-3947-01 17 8193382 8193382 A G SLC25A35 Intron 0.29 TCGA-AA-3947-01 17 8449880 8449880 T - MYH10 Frame_Shift_Del p.A421Pfs*11 0.14 TCGA-AA-3947-01 17 8726734 8726734 T G PIK3R6 Missense_Mutation p.Q532H 0.08 deleterious(0.01) benign(0.046) TCGA-AA-3947-01 17 9763319 9763319 T C GLP2R Silent p.L276L 0.07 TCGA-AA-3947-01 17 9801318 9801318 C T RCVRN 3'UTR 0.43 TCGA-AA-3947-01 17 9808162 9808162 G A RCVRN Silent p.D112D 0.34 TCGA-AA-3947-01 18 12987051 12987051 A T SEH1L Missense_Mutation p.I421F 0.34 deleterious_low_confidence(0) benign(0.004) TCGA-AA-3947-01 18 13049146 13049146 A - CEP192 Frame_Shift_Del p.T788Qfs*40 0.23 TCGA-AA-3947-01 18 14479031 14479032 - T CXADRP3 RNA 0.29 TCGA-AA-3947-01 18 14852429 14852429 A - ANKRD30B Frame_Shift_Del p.K1378Nfs*9 0.24 TCGA-AA-3947-01 18 15316603 15316603 T C RNU6-721P 3'Flank 0.04 TCGA-AA-3947-01 18 19019567 19019567 A G GREB1L Silent p.S306S 0.24 TCGA-AA-3947-01 18 19154506 19154506 T - ESCO1 Frame_Shift_Del p.K100Rfs*8 0.26 TCGA-AA-3947-01 18 19996814 19996814 T C CTAGE1 Missense_Mutation p.T321A 0.41 tolerated(0.27) benign(0.05) TCGA-AA-3947-01 18 21214111 21214111 G A ANKRD29 Silent p.D111D 0.15 TCGA-AA-3947-01 18 24127203 24127203 G A KCTD1 Intron 0.37 TCGA-AA-3947-01 18 2578016 2578016 C T NDC80 Nonsense_Mutation p.Q118* 0.20 TCGA-AA-3947-01 18 265499 265499 T - THOC1 Frame_Shift_Del p.N29Tfs*6 0.25 TCGA-AA-3947-01 18 28714037 28714037 G A DSC1 Missense_Mutation p.P645S 0.33 deleterious(0.02) possibly_damaging(0.886) TCGA-AA-3947-01 18 29115345 29115345 T C DSG2 Missense_Mutation p.Y465H 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 18 29205522 29205522 G A B4GALT6 3'UTR 0.18 TCGA-AA-3947-01 18 2945937 2945937 A G LPIN2 Intron 0.35 TCGA-AA-3947-01 18 31323020 31323022 GCT - ASXL3 In_Frame_Del p.A1075del 0.29 TCGA-AA-3947-01 18 32825535 32825535 T C ZNF397 Missense_Mutation p.V289A 0.36 tolerated(0.47) benign(0.017) TCGA-AA-3947-01 18 32888084 32888090 AAAAAAC - ZNF271 RNA 0.33 TCGA-AA-3947-01 18 335001 335001 A C COLEC12 Silent p.P519P 0.45 TCGA-AA-3947-01 18 34335237 34335237 G C FHOD3 Missense_Mutation p.R1288T 0.41 deleterious(0) possibly_damaging(0.646) TCGA-AA-3947-01 18 34340696 34340696 G T FHOD3 Missense_Mutation p.E1342D 0.10 tolerated(0.23) benign(0.02) TCGA-AA-3947-01 18 42531046 42531046 A G SETBP1 Missense_Mutation p.T581A 0.09 tolerated(0.17) probably_damaging(0.991) TCGA-AA-3947-01 18 43418887 43418887 G A SIGLEC15 Missense_Mutation p.R234H 0.53 deleterious(0.05) probably_damaging(0.968) TCGA-AA-3947-01 18 44146401 44146401 C T LOXHD1 Silent p.L752L 0.32 TCGA-AA-3947-01 18 44561531 44561531 G A TCEB3B Silent p.S35S 0.48 TCGA-AA-3947-01 18 44603829 44603829 C T KATNAL2 Missense_Mutation p.P331L 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 18 47795972 47795972 T C MBD1 3'UTR 0.09 TCGA-AA-3947-01 18 50731625 50731625 C T DCC Missense_Mutation p.S538F 0.47 deleterious(0) possibly_damaging(0.838) TCGA-AA-3947-01 18 50848502 50848502 A G DCC Silent p.A713A 0.34 TCGA-AA-3947-01 18 51807102 51807102 C T POLI Missense_Mutation p.R209W 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 18 580586 580586 C A CETN1 Missense_Mutation p.L60M 0.38 deleterious(0.04) probably_damaging(0.992) TCGA-AA-3947-01 18 5891403 5891403 G C TMEM200C Silent p.A220A 0.44 TCGA-AA-3947-01 18 60985534 60985534 C T BCL2 Silent p.T122T 0.23 TCGA-AA-3947-01 18 61328349 61328349 G A SERPINB3 Silent p.I34I 0.05 TCGA-AA-3947-01 18 61388133 61388133 G A SERPINB11 Silent p.P229P 0.39 TCGA-AA-3947-01 18 61654230 61654230 T C SERPINB8 Silent p.P281P 0.48 TCGA-AA-3947-01 18 6311630 6311630 C - L3MBTL4 5'UTR 0.28 TCGA-AA-3947-01 18 63430217 63430217 C T CDH7 Missense_Mutation p.R47C 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 18 64202230 64202230 T A CDH19 Silent p.T443T 0.37 TCGA-AA-3947-01 18 65180529 65180529 C A DSEL Missense_Mutation p.K449N 0.19 deleterious(0.02) probably_damaging(0.951) TCGA-AA-3947-01 18 65181222 65181222 G A DSEL Silent p.Y218Y 0.33 TCGA-AA-3947-01 18 674280 674281 - A ENOSF1 3'UTR 0.14 TCGA-AA-3947-01 18 67563231 67563231 C A CD226 Nonsense_Mutation p.G145* 0.48 TCGA-AA-3947-01 18 6882152 6882152 T G ARHGAP28 Missense_Mutation p.L277R 0.08 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 18 6950835 6950835 T G LAMA1 Missense_Mutation p.K2781N 0.12 deleterious(0.02) probably_damaging(0.951) TCGA-AA-3947-01 18 6964669 6964669 T C LAMA1 Silent p.R2443R 0.07 TCGA-AA-3947-01 18 7231343 7231343 C T LRRC30 Silent p.G69G 0.10 TCGA-AA-3947-01 18 72913854 72913854 G A ZADH2 Silent p.G217G 0.23 TCGA-AA-3947-01 18 72998801 72998801 C T TSHZ1 Missense_Mutation p.A435V 0.33 tolerated(0.28) benign(0.011) TCGA-AA-3947-01 18 73000344 73000344 C T TSHZ1 Silent p.G949G 0.38 TCGA-AA-3947-01 18 732952 732952 T G YES1 Silent p.P435P 0.07 TCGA-AA-3947-01 18 74074418 74074418 G A ZNF516 3'UTR 0.41 TCGA-AA-3947-01 18 74659508 74659509 - CT ZNF236 Frame_Shift_Ins p.G1607Rfs*13 0.09 TCGA-AA-3947-01 18 76757116 76757116 A G SALL3 Missense_Mutation p.I1233V 0.10 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 18 77474531 77474531 G A CTDP1 Silent p.P357P 0.47 TCGA-AA-3947-01 18 8394504 8394504 C T PTPRM Silent p.C1413C 0.25 TCGA-AA-3947-01 18 8783918 8783918 T G SOGA2 Missense_Mutation p.S270A 0.24 deleterious(0) possibly_damaging(0.646) TCGA-AA-3947-01 18 8784753 8784753 A G SOGA2 Missense_Mutation p.E548G 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 18 8793058 8793058 C T SOGA2 Silent p.L650L 0.09 TCGA-AA-3947-01 18 8825567 8825567 C T SOGA2 Silent p.G1353G 0.21 TCGA-AA-3947-01 19 10439472 10439472 C T RAVER1 Missense_Mutation p.R218H 0.37 tolerated(0.06) probably_damaging(1) TCGA-AA-3947-01 19 10473029 10473029 C T TYK2 Missense_Mutation p.R527Q 0.30 tolerated(0.09) benign(0.033) TCGA-AA-3947-01 19 10625346 10625346 G A S1PR5 Silent p.G114G 0.35 TCGA-AA-3947-01 19 10736932 10736932 C T SLC44A2 Missense_Mutation p.T14M 0.39 deleterious(0.01) benign(0.381) TCGA-AA-3947-01 19 10787913 10787913 G A ILF3 Silent p.E162E 0.14 TCGA-AA-3947-01 19 1105757 1105757 C T GPX4 Missense_Mutation p.P142L 0.50 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3947-01 19 11217263 11217263 C T LDLR Silent p.D239D 0.08 TCGA-AA-3947-01 19 11303995 11303995 T G KANK2 Missense_Mutation p.D254A 0.21 deleterious(0.01) benign(0.204) TCGA-AA-3947-01 19 11504983 11504983 G A RGL3 3'Flank 0.37 TCGA-AA-3947-01 19 1221314 1221314 C - STK11 Frame_Shift_Del p.P281Rfs*6 0.29 TCGA-AA-3947-01 19 12502429 12502429 G T ZNF799 Silent p.A261A 0.17 TCGA-AA-3947-01 19 12739502 12739502 A - ZNF791 Frame_Shift_Del p.K388Nfs*10 0.34 TCGA-AA-3947-01 19 13265616 13265616 G T IER2 3'UTR 0.40 TCGA-AA-3947-01 19 13445249 13445249 G A CACNA1A Missense_Mutation p.R381W 0.22 probably_damaging(0.942) TCGA-AA-3947-01 19 1370730 1370730 G T MUM1 Missense_Mutation p.G548W 0.23 deleterious(0.02) possibly_damaging(0.826) TCGA-AA-3947-01 19 13930237 13930237 G A ZSWIM4 Missense_Mutation p.R547H 0.38 tolerated(0.13) unknown(0) TCGA-AA-3947-01 19 14163076 14163076 C - IL27RA Frame_Shift_Del p.R631Gfs*37 0.09 TCGA-AA-3947-01 19 1495507 1495508 TG - REEP6 Frame_Shift_Del p.W85Afs*329 0.31 TCGA-AA-3947-01 19 15353845 15353845 G A BRD4 Missense_Mutation p.P1012L 0.08 possibly_damaging(0.726) TCGA-AA-3947-01 19 15838993 15838993 C T OR10H2 Missense_Mutation p.A47V 0.16 tolerated(0.39) benign(0.018) TCGA-AA-3947-01 19 15918531 15918531 C T OR10H1 Missense_Mutation p.S106N 0.23 tolerated(0.27) benign(0.028) TCGA-AA-3947-01 19 16212344 16212344 T - TPM4 3'UTR 0.53 TCGA-AA-3947-01 19 16611637 16611637 C T C19orf44 Missense_Mutation p.R12C 0.08 tolerated(0.28) benign(0) TCGA-AA-3947-01 19 16677437 16677437 C A SLC35E1 Missense_Mutation p.R221L 0.40 deleterious(0.01) possibly_damaging(0.803) TCGA-AA-3947-01 19 16874647 16874647 G A NWD1 Silent p.P714P 0.09 TCGA-AA-3947-01 19 17387698 17387698 G A BABAM1 Missense_Mutation p.E256K 0.45 tolerated(0.7) benign(0.423) TCGA-AA-3947-01 19 17899149 17899149 C T FCHO1 3'UTR 0.39 TCGA-AA-3947-01 19 17947972 17947972 G A JAK3 Silent p.L584L 0.42 TCGA-AA-3947-01 19 18047304 18047304 C T CCDC124 Silent p.A25A 0.38 TCGA-AA-3947-01 19 18119578 18119578 G A ARRDC2 Silent p.Q111Q 0.12 TCGA-AA-3947-01 19 18234388 18234388 A G MAST3 Splice_Site p.X157_splice 0.14 TCGA-AA-3947-01 19 18266663 18266663 T C PIK3R2 5'UTR 0.13 TCGA-AA-3947-01 19 1827654 1827654 C T REXO1 Silent p.K378K 0.14 TCGA-AA-3947-01 19 1828150 1828150 C T REXO1 Missense_Mutation p.S213N 0.36 tolerated(0.08) benign(0.282) TCGA-AA-3947-01 19 18710517 18710518 - G CRLF1 Frame_Shift_Ins p.E86* 0.24 TCGA-AA-3947-01 19 18887993 18887993 C - CRTC1 Frame_Shift_Del p.S588Afs*6 0.67 TCGA-AA-3947-01 19 19115376 19115376 T C SUGP2 Missense_Mutation p.T844A 0.09 tolerated(0.11) benign(0.017) TCGA-AA-3947-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.19 TCGA-AA-3947-01 19 19387757 19387758 - G SUGP1 Frame_Shift_Ins p.L637Pfs*19 0.23 TCGA-AA-3947-01 19 19744856 19744856 G A GMIP Missense_Mutation p.A743V 0.14 deleterious(0) possibly_damaging(0.78) TCGA-AA-3947-01 19 1978445 1978445 C T CSNK1G2 Missense_Mutation p.P78L 0.39 deleterious(0) probably_damaging(0.929) TCGA-AA-3947-01 19 1990031 1990031 C T BTBD2 Silent p.P320P 0.46 TCGA-AA-3947-01 19 21365584 21365584 G T ZNF431 Missense_Mutation p.G160C 0.20 tolerated(0.17) benign(0.013) TCGA-AA-3947-01 19 21609041 21609041 G T ZNF493 3'UTR 0.39 TCGA-AA-3947-01 19 21991085 21991085 T G ZNF43 Missense_Mutation p.K585T 0.16 deleterious(0.02) possibly_damaging(0.728) TCGA-AA-3947-01 19 21992052 21992052 A G ZNF43 Missense_Mutation p.C263R 0.43 deleterious(0.01) probably_damaging(1) TCGA-AA-3947-01 19 2234067 2234067 A - PLEKHJ1 Intron 0.23 TCGA-AA-3947-01 19 2291229 2291229 G A LINGO3 Missense_Mutation p.R183C 0.45 deleterious(0) probably_damaging(0.977) TCGA-AA-3947-01 19 2405447 2405447 C T TMPRSS9 Missense_Mutation p.P215L 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 19 2834045 2834045 G T ZNF554 Missense_Mutation p.R271I 0.36 deleterious(0.02) benign(0.015) TCGA-AA-3947-01 19 30312998 30312998 G A CCNE1 Silent p.L267L 0.43 TCGA-AA-3947-01 19 30935727 30935727 C A ZNF536 Missense_Mutation p.Q420K 0.38 tolerated(0.07) probably_damaging(0.966) TCGA-AA-3947-01 19 31767961 31767961 C T TSHZ3 Missense_Mutation p.S913N 0.45 deleterious(0.01) benign(0.004) TCGA-AA-3947-01 19 33639752 33639752 C T WDR88 Silent p.F205F 0.33 TCGA-AA-3947-01 19 33695661 33695661 T C LRP3 Silent p.P126P 0.26 TCGA-AA-3947-01 19 33697912 33697912 C A LRP3 Missense_Mutation p.L582I 0.40 tolerated(0.23) possibly_damaging(0.696) TCGA-AA-3947-01 19 33700292 33700292 T C SLC7A10 Missense_Mutation p.I455V 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-AA-3947-01 19 33702139 33702139 G T SLC7A10 Silent p.T336T 0.41 TCGA-AA-3947-01 19 3449072 3449072 C T NFIC Missense_Mutation p.P340L 0.34 deleterious(0) probably_damaging(0.932) TCGA-AA-3947-01 19 35085609 35085609 A T SCGB2B2 5'UTR 0.34 TCGA-AA-3947-01 19 35085610 35085610 A G SCGB2B2 5'UTR 0.32 TCGA-AA-3947-01 19 35231600 35231600 A - ZNF181 Frame_Shift_Del p.V107Lfs*2 0.12 TCGA-AA-3947-01 19 35250681 35250681 C T ZNF599 Missense_Mutation p.G342D 0.26 tolerated(0.23) benign(0) TCGA-AA-3947-01 19 3531769 3531769 G A FZR1 Missense_Mutation p.A260T 0.20 tolerated(0.39) benign(0.201) TCGA-AA-3947-01 19 35757339 35757339 G A LSR Missense_Mutation p.A334T 0.31 tolerated(0.28) benign(0.004) TCGA-AA-3947-01 19 35801523 35801523 C T MAG Silent p.C531C 0.42 TCGA-AA-3947-01 19 35863222 35863222 G A GPR42 Missense_Mutation p.D321N 0.12 tolerated(0.24) benign(0.084) TCGA-AA-3947-01 19 36113852 36113852 G A HAUS5 Missense_Mutation p.R620H 0.22 deleterious(0) probably_damaging(0.965) TCGA-AA-3947-01 19 362260 362260 C G THEG Missense_Mutation p.M360I 0.41 tolerated(0.12) benign(0.007) TCGA-AA-3947-01 19 36245368 36245368 G A LIN37 Missense_Mutation p.R245Q 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3947-01 19 36357406 36357406 T C KIRREL2 3'UTR 0.11 TCGA-AA-3947-01 19 36523209 36523209 C T CLIP3 Silent p.E17E 0.08 TCGA-AA-3947-01 19 36574080 36574080 G A WDR62 Missense_Mutation p.R496Q 0.49 deleterious(0) possibly_damaging(0.891) TCGA-AA-3947-01 19 36604611 36604611 T C OVOL3 3'UTR 0.09 TCGA-AA-3947-01 19 37100724 37100724 A C ZNF382 Intron 0.13 TCGA-AA-3947-01 19 37118181 37118181 A - ZNF382 Frame_Shift_Del p.K462Nfs*83 0.17 TCGA-AA-3947-01 19 37369896 37369896 G A ZNF345 3'UTR 0.49 TCGA-AA-3947-01 19 37620065 37620065 G T ZNF420 3'UTR 0.17 TCGA-AA-3947-01 19 38077396 38077396 A - ZNF571 Intron 0.40 TCGA-AA-3947-01 19 38189332 38189332 C T ZNF607 Missense_Mutation p.G567D 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3947-01 19 38377225 38377225 G A WDR87 Silent p.D2323D 0.21 TCGA-AA-3947-01 19 38380571 38380571 G T WDR87 Missense_Mutation p.P1208H 0.06 benign(0.087) TCGA-AA-3947-01 19 39292967 39292967 G A LGALS4 Silent p.P216P 0.41 TCGA-AA-3947-01 19 39860659 39860659 G A SAMD4B Silent p.G187G 0.21 TCGA-AA-3947-01 19 39881960 39881960 G - MED29 5'UTR 0.24 TCGA-AA-3947-01 19 39963513 39963513 G A SUPT5H Missense_Mutation p.R700Q 0.47 tolerated(0.17) benign(0.053) TCGA-AA-3947-01 19 39994770 39994770 C T DLL3 Nonsense_Mutation p.R238* 0.40 TCGA-AA-3947-01 19 40430341 40430341 G A FCGBP Silent p.R534R 0.39 TCGA-AA-3947-01 19 40433201 40433201 G A FCGBP Silent p.G356G 0.24 TCGA-AA-3947-01 19 40480313 40480313 C T PSMC4 Silent p.P145P 0.33 TCGA-AA-3947-01 19 40540533 40540533 T A ZNF780B Missense_Mutation p.I745F 0.21 deleterious(0.02) possibly_damaging(0.803) TCGA-AA-3947-01 19 40710396 40710396 G A MAP3K10 Missense_Mutation p.G290R 0.40 deleterious(0) probably_damaging(0.985) TCGA-AA-3947-01 19 40877626 40877626 G A PLD3 Missense_Mutation p.R242Q 0.38 tolerated(1) benign(0.001) TCGA-AA-3947-01 19 41019317 41019317 G A SPTBN4 Missense_Mutation p.R874H 0.47 deleterious(0.02) benign(0.117) TCGA-AA-3947-01 19 41223820 41223820 A G ITPKC Silent p.K260K 0.10 TCGA-AA-3947-01 19 41312470 41312470 C T EGLN2 Missense_Mutation p.A285V 0.42 deleterious(0) possibly_damaging(0.81) TCGA-AA-3947-01 19 41510031 41510031 A - CYP2B6 Frame_Shift_Del p.I101Sfs*13 0.16 TCGA-AA-3947-01 19 41627952 41627952 G A CYP2F1 Missense_Mutation p.A246T 0.15 tolerated(0.43) benign(0.027) TCGA-AA-3947-01 19 41782067 41782067 A G HNRNPUL1 Missense_Mutation p.N217S 0.15 deleterious(0) unknown(0) TCGA-AA-3947-01 19 41932294 41932294 C A B3GNT8 Missense_Mutation p.W130C 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3947-01 19 41932441 41932441 C - B3GNT8 Frame_Shift_Del p.S82Pfs*86 0.27 TCGA-AA-3947-01 19 42383610 42383610 C - CD79A Frame_Shift_Del p.R131Gfs*61 0.35 TCGA-AA-3947-01 19 42507533 42507533 G A GRIK5 Missense_Mutation p.A822V 0.08 deleterious(0) possibly_damaging(0.559) TCGA-AA-3947-01 19 42752694 42752694 G C ERF Missense_Mutation p.P524A 0.45 tolerated_low_confidence(0.18) benign(0.009) TCGA-AA-3947-01 19 42797248 42797248 C - CIC Frame_Shift_Del p.R1205Gfs*97 0.24 TCGA-AA-3947-01 19 4292840 4292840 G C TMIGD2 Missense_Mutation p.A202G 0.15 tolerated(0.24) benign(0.019) TCGA-AA-3947-01 19 4302396 4302396 C - TMIGD2 5'UTR 0.26 TCGA-AA-3947-01 19 43439592 43439592 C T PSG7 Missense_Mutation p.G132R 0.13 tolerated(0.59) benign(0.001) TCGA-AA-3947-01 19 43968551 43968551 G A LYPD3 Missense_Mutation p.P46L 0.44 tolerated(0.09) possibly_damaging(0.71) TCGA-AA-3947-01 19 44056265 44056265 C T XRCC1 Missense_Mutation p.G329D 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 19 44419102 44419102 T G ZNF45 Missense_Mutation p.K162N 0.10 tolerated(0.1) benign(0.003) TCGA-AA-3947-01 19 44570490 44570490 G A ZNF223 Missense_Mutation p.R170H 0.09 tolerated(1) benign(0) TCGA-AA-3947-01 19 4457678 4457678 T C UBXN6 Missense_Mutation p.Q6R 0.48 deleterious(0.02) possibly_damaging(0.482) TCGA-AA-3947-01 19 44739175 44739175 A - ZNF227 Frame_Shift_Del p.N199Ifs*10 0.26 TCGA-AA-3947-01 19 4512763 4512763 C T PLIN4 Missense_Mutation p.M389I 0.42 deleterious(0.04) benign(0.004) TCGA-AA-3947-01 19 45322724 45322724 G A BCAM Missense_Mutation p.R532H 0.14 tolerated(0.2) benign(0.003) TCGA-AA-3947-01 19 45797675 45797675 G T MARK4 Missense_Mutation p.E521D 0.32 tolerated(1) benign(0.013) TCGA-AA-3947-01 19 45860623 45860623 A G ERCC2 Missense_Mutation p.S462P 0.20 deleterious(0) probably_damaging(0.939) TCGA-AA-3947-01 19 46025612 46025612 C - VASP Frame_Shift_Del p.A167Lfs*101 0.23 TCGA-AA-3947-01 19 46095148 46095148 C T GPR4 5'UTR 0.15 TCGA-AA-3947-01 19 46216552 46216552 G A FBXO46 Nonsense_Mutation p.Q68* 0.10 TCGA-AA-3947-01 19 46268844 46268844 C - SIX5 Frame_Shift_Del p.G712Vfs*14 0.26 TCGA-AA-3947-01 19 46321257 46321257 C - SYMPK Frame_Shift_Del p.G1014Afs*4 0.27 TCGA-AA-3947-01 19 46357672 46357672 C T SYMPK Missense_Mutation p.D28N 0.38 tolerated(0.09) benign(0.023) TCGA-AA-3947-01 19 46417770 46417770 G A NANOS2 Missense_Mutation p.T61I 0.19 tolerated(0.18) benign(0.075) TCGA-AA-3947-01 19 46522575 46522575 C A PGLYRP1 Missense_Mutation p.R171L 0.06 deleterious(0.02) probably_damaging(1) TCGA-AA-3947-01 19 47126797 47126797 C T PTGIR Missense_Mutation p.R229H 0.38 deleterious(0.05) benign(0.032) TCGA-AA-3947-01 19 47424840 47424841 - C ARHGAP35 Frame_Shift_Ins p.R972Pfs*40 0.23 TCGA-AA-3947-01 19 47570534 47570534 G - ZC3H4 Frame_Shift_Del p.V998Cfs*146 0.17 TCGA-AA-3947-01 19 47774382 47774382 C A CCDC9 Missense_Mutation p.P377T 0.17 tolerated(0.05) unknown(0) TCGA-AA-3947-01 19 4794331 4794331 C A FEM1A 3'UTR 0.08 TCGA-AA-3947-01 19 48049094 48049094 G - ZNF541 Frame_Shift_Del p.P231Rfs*49 0.27 TCGA-AA-3947-01 19 48305112 48305113 - T TPRX1 Frame_Shift_Ins p.H386Tfs*15 0.29 TCGA-AA-3947-01 19 48618895 48618895 A C LIG1 3'UTR 0.08 TCGA-AA-3947-01 19 48976634 48976634 A G CYTH2 Missense_Mutation p.R145G 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 19 48994758 48994758 G - LMTK3 Frame_Shift_Del p.E1407Rfs*106 0.43 TCGA-AA-3947-01 19 49208987 49208987 T - FUT2 3'UTR 0.42 TCGA-AA-3947-01 19 49232629 49232629 C T RASIP1 Silent p.L466L 0.45 TCGA-AA-3947-01 19 49409008 49409008 A G NUCB1 Splice_Site p.X82_splice 0.35 TCGA-AA-3947-01 19 49472601 49472601 T C GYS1 Missense_Mutation p.S720G 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-AA-3947-01 19 49497164 49497164 G A RUVBL2 5'UTR 0.17 TCGA-AA-3947-01 19 49611257 49611257 C T SNRNP70 Nonsense_Mutation p.R291* 0.56 TCGA-AA-3947-01 19 49622137 49622137 G - C19orf73 Frame_Shift_Del p.P48Hfs*9 0.33 TCGA-AA-3947-01 19 50169944 50169944 G A BCL2L12 Missense_Mutation p.A83T 0.13 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-AA-3947-01 19 50332240 50332240 C T MED25 Missense_Mutation p.R140W 0.38 deleterious(0) probably_damaging(0.949) TCGA-AA-3947-01 19 50412113 50412113 C T NUP62 Missense_Mutation p.A318T 0.39 tolerated(1) benign(0.036) TCGA-AA-3947-01 19 50462070 50462070 G - SIGLEC11 Frame_Shift_Del p.P398Qfs*4 0.11 TCGA-AA-3947-01 19 50462080 50462080 T G SIGLEC11 Missense_Mutation p.S395R 0.26 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 19 504936 504936 A T MADCAM1 Missense_Mutation p.T374S 0.30 deleterious_low_confidence(0) benign(0.292) TCGA-AA-3947-01 19 50917108 50917108 C T POLD1 Missense_Mutation p.P787L 0.30 tolerated(0.23) benign(0.219) TCGA-AA-3947-01 19 51021623 51021623 G A LRRC4B Silent p.A449A 0.33 TCGA-AA-3947-01 19 51022492 51022492 G C LRRC4B Missense_Mutation p.L160V 0.06 deleterious(0) probably_damaging(0.994) TCGA-AA-3947-01 19 51301324 51301324 A G C19orf48 3'UTR 0.31 TCGA-AA-3947-01 19 51738479 51738479 C T CD33 Silent p.L271L 0.19 TCGA-AA-3947-01 19 51870355 51870355 A - CLDND2 3'UTR 0.29 TCGA-AA-3947-01 19 51984665 51984665 G A CEACAM18 Missense_Mutation p.G201D 0.10 tolerated(0.61) benign(0.003) TCGA-AA-3947-01 19 51986394 51986394 A G CEACAM18 Missense_Mutation p.H327R 0.08 tolerated(1) benign(0.005) TCGA-AA-3947-01 19 52031052 52031052 C A SIGLEC6 Missense_Mutation p.Q379H 0.06 deleterious(0.02) possibly_damaging(0.549) TCGA-AA-3947-01 19 5231578 5231578 G A PTPRS Missense_Mutation p.T633M 0.20 deleterious(0) probably_damaging(0.988) TCGA-AA-3947-01 19 52327673 52327673 C T FPR3 Silent p.I224I 0.42 TCGA-AA-3947-01 19 52468332 52468332 G A ZNF350 Silent p.N458N 0.36 TCGA-AA-3947-01 19 52570763 52570763 A C ZNF841 Nonsense_Mutation p.Y124* 0.33 TCGA-AA-3947-01 19 53118008 53118008 T - ZNF83 5'UTR 0.31 TCGA-AA-3947-01 19 53208919 53208919 A - ZNF611 Frame_Shift_Del p.F463Lfs*36 0.08 TCGA-AA-3947-01 19 53344823 53344823 G A ZNF468 Nonsense_Mutation p.Q242* 0.36 TCGA-AA-3947-01 19 53643937 53643937 C A ZNF347 Missense_Mutation p.G716V 0.06 deleterious(0) probably_damaging(0.994) TCGA-AA-3947-01 19 53645748 53645748 T G ZNF347 Missense_Mutation p.E112D 0.09 deleterious(0.04) benign(0.139) TCGA-AA-3947-01 19 53740289 53740290 - T ZNF677 Frame_Shift_Ins p.S564Kfs*3 0.27 TCGA-AA-3947-01 19 53761938 53761938 A - VN1R2 Frame_Shift_Del p.N104Ifs*23 0.25 TCGA-AA-3947-01 19 53958499 53958499 A G ZNF761 RNA 0.05 TCGA-AA-3947-01 19 54215519 54215519 A G MIR521-2 5'Flank 0.39 TCGA-AA-3947-01 19 54395012 54395012 G A PRKCG Missense_Mutation p.R205Q 0.40 tolerated(0.07) benign(0.003) TCGA-AA-3947-01 19 54409975 54409975 C T PRKCG Silent p.G640G 0.09 TCGA-AA-3947-01 19 54627181 54627181 C T PRPF31 Missense_Mutation p.A194V 0.25 deleterious(0.02) benign(0.284) TCGA-AA-3947-01 19 54671993 54671994 AA - TMC4 Frame_Shift_Del p.F240Lfs*221 0.32 TCGA-AA-3947-01 19 54760466 54760466 C T LILRB5 Missense_Mutation p.A81T 0.17 deleterious(0.04) possibly_damaging(0.886) TCGA-AA-3947-01 19 54973203 54973203 C T LENG8 3'UTR 0.30 TCGA-AA-3947-01 19 55045144 55045144 C T KIR3DX1 Silent p.H88H 0.48 TCGA-AA-3947-01 19 55221462 55221462 G A AC098784.2 3'Flank 0.41 TCGA-AA-3947-01 19 55363678 55363678 G A KIR3DL2 Missense_Mutation p.R99H 0.40 tolerated(0.6) benign(0.002) TCGA-AA-3947-01 19 55493791 55493791 C T NLRP2 Missense_Mutation p.A242V 0.29 tolerated(0.16) possibly_damaging(0.577) TCGA-AA-3947-01 19 55698911 55698911 C T PTPRH Missense_Mutation p.A846T 0.17 benign(0.227) TCGA-AA-3947-01 19 55713674 55713674 T C PTPRH Silent p.R301R 0.15 TCGA-AA-3947-01 19 55716884 55716884 G A PTPRH Silent p.D143D 0.11 TCGA-AA-3947-01 19 55873667 55873667 C T FAM71E2 Silent p.T170T 0.35 TCGA-AA-3947-01 19 56109175 56109175 G - FIZ1 Frame_Shift_Del p.R20Gfs*47 0.33 TCGA-AA-3947-01 19 56206189 56206189 C - EPN1 Frame_Shift_Del p.P542Hfs*33 0.13 TCGA-AA-3947-01 19 56443688 56443688 A G NLRP13 5'Flank 0.16 TCGA-AA-3947-01 19 56466068 56466068 G T NLRP8 Missense_Mutation p.G215V 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 19 56539330 56539330 G T NLRP5 Missense_Mutation p.E577D 0.06 tolerated(0.08) benign(0.034) TCGA-AA-3947-01 19 5667369 5667369 A G SAFB Missense_Mutation p.D822G 0.08 deleterious(0.01) unknown(0) TCGA-AA-3947-01 19 57133591 57133591 G A ZNF71 Silent p.S312S 0.09 TCGA-AA-3947-01 19 57176085 57176085 G A ZNF835 Missense_Mutation p.T161M 0.34 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 19 57286117 57286117 T C ZIM2 Missense_Mutation p.Y508C 0.09 tolerated(0.12) benign(0.006) TCGA-AA-3947-01 19 57326712 57326712 C A PEG3 Missense_Mutation p.C1033F 0.41 tolerated(0.6) benign(0.008) TCGA-AA-3947-01 19 5778700 5778700 G A CATSPERD 3'UTR 0.34 TCGA-AA-3947-01 19 5789700 5789700 G A DUS3L Missense_Mutation p.R140C 0.28 deleterious(0) possibly_damaging(0.776) TCGA-AA-3947-01 19 58101924 58101924 C T ZIK1 Missense_Mutation p.R249C 0.39 tolerated(0.13) possibly_damaging(0.893) TCGA-AA-3947-01 19 58196688 58196688 A G ZNF551 Missense_Mutation p.D47G 0.17 deleterious(0.02) benign(0.343) TCGA-AA-3947-01 19 58213954 58213954 G A ZNF154 Silent p.D121D 0.07 TCGA-AA-3947-01 19 5831447 5831447 T C FUT6 3'UTR 0.21 TCGA-AA-3947-01 19 58388287 58388287 G T ZNF814 Missense_Mutation p.L54M 0.07 deleterious(0.04) probably_damaging(0.961) TCGA-AA-3947-01 19 58458838 58458838 G A ZNF256 Missense_Mutation p.A2V 0.41 deleterious(0.04) possibly_damaging(0.773) TCGA-AA-3947-01 19 58512097 58512097 C T ZNF606 Silent p.T14T 0.51 TCGA-AA-3947-01 19 58849911 58849911 C T ZSCAN22 Missense_Mutation p.A232V 0.08 tolerated(0.69) benign(0) TCGA-AA-3947-01 19 58864243 58864243 G A A1BG Intron 0.38 TCGA-AA-3947-01 19 619266 619266 C T POLRMT Missense_Mutation p.V1033I 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3947-01 19 6433605 6433605 G - SLC25A41 Frame_Shift_Del p.Q34Nfs*44 0.24 TCGA-AA-3947-01 19 6481730 6481730 G - DENND1C 5'UTR 0.26 TCGA-AA-3947-01 19 6828446 6828446 C T VAV1 Missense_Mutation p.T347M 0.36 deleterious(0) probably_damaging(0.984) TCGA-AA-3947-01 19 6857257 6857257 G A VAV1 3'Flank 0.58 TCGA-AA-3947-01 19 6904182 6904182 T C EMR1 Missense_Mutation p.F313S 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-AA-3947-01 19 7518363 7518363 G T ARHGEF18 Missense_Mutation p.E434D 0.11 tolerated(0.1) possibly_damaging(0.755) TCGA-AA-3947-01 19 7591778 7591778 C T MCOLN1 Silent p.N179N 0.37 TCGA-AA-3947-01 19 7607917 7607917 G C PNPLA6 Missense_Mutation p.V528L 0.16 tolerated(0.14) benign(0.159) TCGA-AA-3947-01 19 7675769 7675769 C - CAMSAP3 Frame_Shift_Del p.R363Gfs*42 0.16 TCGA-AA-3947-01 19 7677950 7677950 G T CAMSAP3 Missense_Mutation p.E884D 0.64 tolerated(0.33) benign(0.007) TCGA-AA-3947-01 19 7762476 7762476 C T FCER2 Splice_Site p.X64_splice 0.13 TCGA-AA-3947-01 19 7806085 7806085 C T CD209 3'UTR 0.07 TCGA-AA-3947-01 19 7928432 7928432 C T EVI5L Silent p.G754G 0.09 TCGA-AA-3947-01 19 7964763 7964763 C - LRRC8E Frame_Shift_Del p.P454Rfs*33 0.23 TCGA-AA-3947-01 19 814531 814531 G A LPPR3 Missense_Mutation p.A273V 0.24 deleterious(0) probably_damaging(0.981) TCGA-AA-3947-01 19 814912 814912 G A LPPR3 Silent p.H191H 0.51 TCGA-AA-3947-01 19 8367483 8367483 A C CD320 Missense_Mutation p.L238R 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 19 8387227 8387227 C T RPS28 3'UTR 0.28 TCGA-AA-3947-01 19 8389378 8389378 G A KANK3 Silent p.A779A 0.32 TCGA-AA-3947-01 19 8564076 8564076 G A PRAM1 Nonsense_Mutation p.Q206* 0.48 TCGA-AA-3947-01 19 8592319 8592319 C A MYO1F Missense_Mutation p.G793W 0.10 deleterious(0) possibly_damaging(0.84) TCGA-AA-3947-01 19 8618045 8618045 C T MYO1F Missense_Mutation p.R161H 0.07 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 19 8660728 8660728 G T ADAMTS10 Missense_Mutation p.T466K 0.44 deleterious(0.01) probably_damaging(0.974) TCGA-AA-3947-01 19 8953859 8953859 G A MBD3L1 Missense_Mutation p.A169T 0.49 tolerated(0.06) benign(0.051) TCGA-AA-3947-01 19 9007493 9007493 G A MUC16 Missense_Mutation p.P13159S 0.10 benign(0.399) TCGA-AA-3947-01 19 9066842 9066842 C T MUC16 Silent p.L6868L 0.37 TCGA-AA-3947-01 19 9067610 9067610 G T MUC16 Silent p.A6612A 0.37 TCGA-AA-3947-01 19 9089898 9089898 A G MUC16 Silent p.D639D 0.07 TCGA-AA-3947-01 19 9270942 9270942 G A ZNF317 Silent p.P207P 0.36 TCGA-AA-3947-01 19 9296985 9296985 T - OR7D2 Frame_Shift_Del p.F178Sfs*4 0.07 TCGA-AA-3947-01 19 9525027 9525027 C A ZNF266 Missense_Mutation p.G192C 0.07 deleterious(0.01) benign(0.008) TCGA-AA-3947-01 19 9676591 9676591 C A ZNF121 3'UTR 0.35 TCGA-AA-3947-01 19 9971445 9971445 C T OLFM2 Missense_Mutation p.G30D 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-AA-3947-01 1 100606529 100606529 A - TRMT13 Frame_Shift_Del p.V210Ffs*5 0.29 TCGA-AA-3947-01 1 10207124 10207124 G A UBE4B Missense_Mutation p.R856H 0.37 deleterious(0.04) benign(0.236) TCGA-AA-3947-01 1 103453263 103453263 C A COL11A1 Missense_Mutation p.D810Y 0.34 unknown(0) TCGA-AA-3947-01 1 10435091 10435091 A G KIF1B Missense_Mutation p.Q1713R 0.06 deleterious(0.01) probably_damaging(0.946) TCGA-AA-3947-01 1 10709165 10709165 C T CASZ1 Silent p.A1040A 0.10 TCGA-AA-3947-01 1 10720015 10720015 C T CASZ1 Missense_Mutation p.A362T 0.41 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-AA-3947-01 1 107599778 107599778 A G PRMT6 Silent p.E147E 0.43 TCGA-AA-3947-01 1 107599898 107599898 C A PRMT6 Silent p.A187A 0.13 TCGA-AA-3947-01 1 109197381 109197381 C A HENMT1 Missense_Mutation p.D119Y 0.38 deleterious(0) probably_damaging(0.979) TCGA-AA-3947-01 1 109366208 109366208 C T AKNAD1 Missense_Mutation p.C680Y 0.42 tolerated(0.54) benign(0.034) TCGA-AA-3947-01 1 109472576 109472577 - T GPSM2 3'UTR 0.36 TCGA-AA-3947-01 1 109794254 109794254 T C CELSR2 Missense_Mutation p.V518A 0.11 tolerated(0.41) possibly_damaging(0.524) TCGA-AA-3947-01 1 11008120 11008120 G T C1orf127 Missense_Mutation p.P691H 0.35 tolerated(0.48) probably_damaging(0.98) TCGA-AA-3947-01 1 110211546 110211546 G T GSTM2 Splice_Site p.X38_splice 0.19 TCGA-AA-3947-01 1 110655682 110655682 A G UBL4B 3'UTR 0.36 TCGA-AA-3947-01 1 110656407 110656407 T C UBL4B 3'UTR 0.34 TCGA-AA-3947-01 1 111060107 111060108 - C KCNA10 Frame_Shift_Ins p.K435Efs*35 0.28 TCGA-AA-3947-01 1 11167499 11167499 A C MTOR 3'UTR 0.11 TCGA-AA-3947-01 1 113234362 113234362 C - MOV10 Frame_Shift_Del p.M306Cfs*26 0.21 TCGA-AA-3947-01 1 113655104 113655104 T C LRIG2 Missense_Mutation p.M601T 0.11 deleterious(0) benign(0.053) TCGA-AA-3947-01 1 113662003 113662003 A C LRIG2 Missense_Mutation p.K943N 0.21 tolerated(0.09) benign(0.021) TCGA-AA-3947-01 1 114696282 114696282 C T SYT6 5'Flank 0.62 TCGA-AA-3947-01 1 114940224 114940233 TTTTCGTTTT CG TRIM33 3'UTR 0.20 TCGA-AA-3947-01 1 114976301 114976301 T C TRIM33 Silent p.L326L 0.29 TCGA-AA-3947-01 1 115130526 115130527 - A DENND2C Frame_Shift_Ins p.V827Cfs*15 0.24 TCGA-AA-3947-01 1 115275398 115275398 T C CSDE1 Missense_Mutation p.I339V 0.21 tolerated(0.3) benign(0.061) TCGA-AA-3947-01 1 115321872 115321872 G A SIKE1 Missense_Mutation p.A104V 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 1 116569566 116569566 A G SLC22A15 Silent p.L217L 0.15 TCGA-AA-3947-01 1 11734852 11734852 G A MAD2L2 Missense_Mutation p.R206C 0.38 tolerated(0.11) benign(0.002) TCGA-AA-3947-01 1 1179862 1179862 C T FAM132A Missense_Mutation p.G65R 0.07 tolerated(0.17) benign(0.198) TCGA-AA-3947-01 1 11898406 11898406 G A CLCN6 Silent p.P770P 0.32 TCGA-AA-3947-01 1 11907329 11907329 G A NPPA Silent p.L97L 0.33 TCGA-AA-3947-01 1 12888624 12888624 G A PRAMEF11 5'UTR 0.32 TCGA-AA-3947-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.35 TCGA-AA-3947-01 1 12939846 12939846 C T PRAMEF4 Missense_Mutation p.C319Y 0.12 deleterious(0.03) benign(0.003) TCGA-AA-3947-01 1 144917917 144917917 G T PDE4DIP Missense_Mutation p.L457I 0.04 deleterious(0.01) possibly_damaging(0.792) TCGA-AA-3947-01 1 144930951 144930951 G T PDE4DIP Intron 0.22 TCGA-AA-3947-01 1 145477122 145477122 T C LIX1L 5'UTR 0.41 TCGA-AA-3947-01 1 145528592 145528592 G A ITGA10 Missense_Mutation p.R130H 0.38 tolerated(1) benign(0.004) TCGA-AA-3947-01 1 145699025 145699025 C A CD160 Missense_Mutation p.G156C 0.06 deleterious(0.03) probably_damaging(0.971) TCGA-AA-3947-01 1 145826955 145826955 C A GPR89A 5'UTR 0.11 TCGA-AA-3947-01 1 147096301 147096301 G T BCL9 Missense_Mutation p.Q1274H 0.37 deleterious(0) possibly_damaging(0.556) TCGA-AA-3947-01 1 149871871 149871871 C T BOLA1 Missense_Mutation p.R87W 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 1 149872047 149872047 A C BOLA1 3'Flank 0.43 TCGA-AA-3947-01 1 149916744 149916744 C T OTUD7B Missense_Mutation p.S515N 0.07 tolerated(0.26) probably_damaging(0.993) TCGA-AA-3947-01 1 150116995 150116995 C T VPS45 3'UTR 0.54 TCGA-AA-3947-01 1 150266812 150266812 C A MRPS21 Missense_Mutation p.A9D 0.07 benign(0.263) TCGA-AA-3947-01 1 150915423 150915423 A G SETDB1 Missense_Mutation p.K257E 0.21 tolerated(0.55) benign(0.032) TCGA-AA-3947-01 1 150955896 150955896 C A ANXA9 Missense_Mutation p.A53D 0.12 deleterious(0) probably_damaging(0.995) TCGA-AA-3947-01 1 150970119 150970119 G A FAM63A Missense_Mutation p.T485M 0.61 deleterious(0.04) possibly_damaging(0.472) TCGA-AA-3947-01 1 151023063 151023063 C A C1orf56 3'UTR 0.47 TCGA-AA-3947-01 1 151028285 151028285 C A CDC42SE1 5'UTR 0.13 TCGA-AA-3947-01 1 151137767 151137767 T C LYSMD1 5'UTR 0.22 TCGA-AA-3947-01 1 151209204 151209204 G T PIP5K1A Missense_Mutation p.E370D 0.39 tolerated(0.26) benign(0.292) TCGA-AA-3947-01 1 151220431 151220431 T A PIP5K1A 3'Flank 0.38 TCGA-AA-3947-01 1 151261079 151261079 C - ZNF687 Frame_Shift_Del p.H733Mfs*30 0.36 TCGA-AA-3947-01 1 151316243 151316243 A G RFX5 Missense_Mutation p.V224A 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3947-01 1 151316360 151316360 T C RFX5 Splice_Site p.X186_splice 0.31 TCGA-AA-3947-01 1 151496719 151496719 G A CGN Missense_Mutation p.R429H 0.14 tolerated(0.19) benign(0.265) TCGA-AA-3947-01 1 151677587 151677587 C T CELF3 Missense_Mutation p.G443D 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 1 152191222 152191222 G A HRNR Silent p.G961G 0.14 TCGA-AA-3947-01 1 152284366 152284366 G A FLG Missense_Mutation p.A999V 0.40 benign(0.298) TCGA-AA-3947-01 1 152284427 152284427 T G FLG Silent p.R979R 0.06 TCGA-AA-3947-01 1 152326392 152326392 T G FLG2 Missense_Mutation p.E1290D 0.09 benign(0.307) TCGA-AA-3947-01 1 152552351 152552351 C A LCE3D Missense_Mutation p.C21F 0.34 deleterious_low_confidence(0) unknown(0) TCGA-AA-3947-01 1 152648578 152648578 C T LCE2C Silent p.P29P 0.07 TCGA-AA-3947-01 1 152732421 152732421 C T KPRP Silent p.Y119Y 0.40 TCGA-AA-3947-01 1 153234546 153234546 A G LOR 3'UTR 0.11 TCGA-AA-3947-01 1 153730181 153730181 T C INTS3 Missense_Mutation p.L364P 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 1 153946664 153946664 A G CREB3L4 3'UTR 0.33 TCGA-AA-3947-01 1 154145398 154145398 A G TPM3 Silent p.A184A 0.10 TCGA-AA-3947-01 1 154516462 154516462 T C TDRD10 Missense_Mutation p.L176P 0.08 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 1 154965285 154965285 A G FLAD1 Intron 0.09 TCGA-AA-3947-01 1 155030433 155030433 A G ADAM15 Missense_Mutation p.D508G 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-AA-3947-01 1 155058631 155058631 C A EFNA3 Missense_Mutation p.P179H 0.40 deleterious(0.04) possibly_damaging(0.809) TCGA-AA-3947-01 1 155184170 155184170 G A MTX1 3'Flank 0.32 TCGA-AA-3947-01 1 155270691 155270691 C A PKLR Intron 0.38 TCGA-AA-3947-01 1 155279945 155279945 G A FDPS Silent p.E96E 0.38 TCGA-AA-3947-01 1 155307359 155307359 C T ASH1L 3'UTR 0.10 TCGA-AA-3947-01 1 155307882 155307882 T - ASH1L Frame_Shift_Del p.N2934Mfs*5 0.09 TCGA-AA-3947-01 1 155764919 155764920 - ATC GON4L In_Frame_Ins p.D556dup 0.24 TCGA-AA-3947-01 1 155896908 155896908 C T KIAA0907 Silent p.R168R 0.10 TCGA-AA-3947-01 1 155899582 155899582 A G KIAA0907 Missense_Mutation p.L102P 0.49 deleterious(0.04) probably_damaging(0.994) TCGA-AA-3947-01 1 156106143 156106143 G A LMNA Silent p.Q432Q 0.08 TCGA-AA-3947-01 1 156212041 156212041 C A BGLAP Missense_Mutation p.L7I 0.44 tolerated(0.29) unknown(0) TCGA-AA-3947-01 1 156255674 156255674 T C TMEM79 Silent p.Y219Y 0.08 TCGA-AA-3947-01 1 156876652 156876652 C T PEAR1 Silent p.P208P 0.58 TCGA-AA-3947-01 1 1575658 1575658 T C CDK11B Missense_Mutation p.K414E 0.36 unknown(0) TCGA-AA-3947-01 1 157738327 157738327 G T FCRL2 Missense_Mutation p.R254S 0.18 tolerated(0.06) possibly_damaging(0.483) TCGA-AA-3947-01 1 158153932 158153932 G A CD1D Missense_Mutation p.V334I 0.07 tolerated(1) benign(0) TCGA-AA-3947-01 1 158581041 158581041 G A SPTA1 3'UTR 0.45 TCGA-AA-3947-01 1 158597503 158597503 A G SPTA1 Missense_Mutation p.M1859T 0.09 deleterious(0.03) benign(0.048) TCGA-AA-3947-01 1 159175893 159175893 C T DARC Missense_Mutation p.P224S 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 1 160053948 160053948 G A KCNJ9 Missense_Mutation p.R43H 0.31 deleterious(0) probably_damaging(0.993) TCGA-AA-3947-01 1 161011524 161011524 C - USF1 Frame_Shift_Del p.G130Vfs*33 0.28 TCGA-AA-3947-01 1 161022584 161022584 C T ARHGAP30 Missense_Mutation p.G223D 0.40 tolerated(0.09) benign(0.006) TCGA-AA-3947-01 1 161495842 161495842 G A HSPA6 Missense_Mutation p.G465D 0.39 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-AA-3947-01 1 162124265 162124265 G A NOS1AP Missense_Mutation p.R59Q 0.44 tolerated(0.07) possibly_damaging(0.577) TCGA-AA-3947-01 1 162325128 162325128 T A NOS1AP Silent p.S249S 0.09 TCGA-AA-3947-01 1 16258889 16258889 A - SPEN Frame_Shift_Del p.N2053Tfs*11 0.28 TCGA-AA-3947-01 1 16262415 16262415 A G SPEN Missense_Mutation p.Q3227R 0.41 benign(0.131) TCGA-AA-3947-01 1 162748468 162748468 T C DDR2 Silent p.D794D 0.42 TCGA-AA-3947-01 1 163043392 163043392 T G RGS4 Missense_Mutation p.S217A 0.08 tolerated(0.41) possibly_damaging(0.87) TCGA-AA-3947-01 1 16360247 16360247 C A CLCNKA 3'UTR 0.26 TCGA-AA-3947-01 1 16474976 16474977 - C EPHA2 Frame_Shift_Ins p.E241* 0.18 TCGA-AA-3947-01 1 166927228 166927228 C T ILDR2 Missense_Mutation p.V53I 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3947-01 1 167095460 167095460 G T DUSP27 Missense_Mutation p.K364N 0.23 tolerated(0.09) benign(0.002) TCGA-AA-3947-01 1 168511309 168511309 A G XCL2 Missense_Mutation p.V33A 0.09 tolerated(0.06) possibly_damaging(0.562) TCGA-AA-3947-01 1 1687734 1687734 C - NADK Frame_Shift_Del p.G328Efs*30 0.29 TCGA-AA-3947-01 1 16893748 16893748 T C NBPF1 Missense_Mutation p.D922G 0.05 deleterious(0.04) possibly_damaging(0.899) TCGA-AA-3947-01 1 169388275 169388275 C A CCDC181 Missense_Mutation p.K397N 0.44 deleterious(0) probably_damaging(0.988) TCGA-AA-3947-01 1 170961417 170961417 G A MROH9 Missense_Mutation p.V381I 0.38 tolerated(0.14) benign(0.005) TCGA-AA-3947-01 1 171310854 171310854 G - FMO4 Frame_Shift_Del p.A520Hfs*18 0.15 TCGA-AA-3947-01 1 171561016 171561016 G - PRRC2C 3'UTR 0.28 TCGA-AA-3947-01 1 171752952 171752952 A G METTL13 Missense_Mutation p.N76D 0.36 deleterious(0.01) probably_damaging(0.956) TCGA-AA-3947-01 1 171757062 171757062 C T METTL13 Missense_Mutation p.S434F 0.34 tolerated(0.52) benign(0.221) TCGA-AA-3947-01 1 172376953 172376953 G A DNM3 Missense_Mutation p.R855H 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3947-01 1 173454618 173454618 A - PRDX6 Frame_Shift_Del p.K125Rfs*5 0.25 TCGA-AA-3947-01 1 173921272 173921272 A - RC3H1 Frame_Shift_Del p.L792Wfs*5 0.13 TCGA-AA-3947-01 1 174210733 174210733 G T RABGAP1L Nonsense_Mutation p.E219* 0.09 TCGA-AA-3947-01 1 175066810 175066810 G A TNN Missense_Mutation p.A616T 0.16 tolerated(0.06) benign(0.124) TCGA-AA-3947-01 1 175092583 175092583 A G TNN Missense_Mutation p.M900V 0.07 deleterious(0.03) benign(0.003) TCGA-AA-3947-01 1 175292549 175292549 G A TNR Missense_Mutation p.R1341C 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 1 175365922 175365922 C T TNR Missense_Mutation p.R333Q 0.38 tolerated(0.31) possibly_damaging(0.791) TCGA-AA-3947-01 1 177898889 177898889 A C SEC16B 3'UTR 0.31 TCGA-AA-3947-01 1 178427543 178427543 G T RASAL2 Missense_Mutation p.G1039V 0.39 deleterious(0.03) possibly_damaging(0.888) TCGA-AA-3947-01 1 178490118 178490118 C T TEX35 Intron 0.39 TCGA-AA-3947-01 1 178854287 178854287 G A RALGPS2 Silent p.P327P 0.41 TCGA-AA-3947-01 1 179077038 179077038 C A ABL2 Missense_Mutation p.G1122C 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3947-01 1 179561902 179561902 G A TDRD5 Missense_Mutation p.R51Q 0.19 deleterious(0.05) benign(0.203) TCGA-AA-3947-01 1 182545500 182545500 T - RNASEL Frame_Shift_Del p.M644* 0.15 TCGA-AA-3947-01 1 182836140 182836140 C T DHX9 Missense_Mutation p.H507Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 1 183194775 183194775 C A LAMC2 Missense_Mutation p.P329H 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 1 183208668 183208668 G T LAMC2 Missense_Mutation p.E1013D 0.07 tolerated(0.11) possibly_damaging(0.682) TCGA-AA-3947-01 1 183516377 183516377 G A SMG7 Missense_Mutation p.R915Q 0.32 deleterious_low_confidence(0.01) benign(0.111) TCGA-AA-3947-01 1 184006369 184006369 C T COLGALT2 Silent p.E41E 0.52 TCGA-AA-3947-01 1 1848278 1848278 C T CALML6 Missense_Mutation p.A114V 0.44 tolerated(0.06) benign(0.04) TCGA-AA-3947-01 1 185969318 185969318 T - HMCN1 Frame_Shift_Del p.V1339Gfs*22 0.29 TCGA-AA-3947-01 1 185987395 185987395 A G HMCN1 Missense_Mutation p.Q1794R 0.09 probably_damaging(0.989) TCGA-AA-3947-01 1 186106636 186106636 G T HMCN1 Missense_Mutation p.G4530V 0.56 probably_damaging(0.997) TCGA-AA-3947-01 1 186158894 186158894 C T HMCN1 Nonsense_Mutation p.R5598* 0.46 TCGA-AA-3947-01 1 186643808 186643808 G C PTGS2 Missense_Mutation p.P498A 0.49 tolerated(0.19) benign(0.027) TCGA-AA-3947-01 1 18704816 18704816 C T IGSF21 Missense_Mutation p.T467M 0.58 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-AA-3947-01 1 18807856 18807856 C T KLHDC7A Silent p.G127G 0.12 TCGA-AA-3947-01 1 18808874 18808874 C T KLHDC7A Missense_Mutation p.R467C 0.19 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 1 190067542 190067542 T C BRINP3 Missense_Mutation p.N636S 0.14 tolerated(0.74) benign(0) TCGA-AA-3947-01 1 19181380 19181380 A G TAS1R2 Missense_Mutation p.V195A 0.18 deleterious(0.02) benign(0.232) TCGA-AA-3947-01 1 196712708 196712708 A G CFH Missense_Mutation p.E1087G 0.05 tolerated(0.38) benign(0) TCGA-AA-3947-01 1 196716285 196716285 G A CFH Missense_Mutation p.A1180T 0.06 tolerated(0.66) benign(0.001) TCGA-AA-3947-01 1 196762757 196762757 T G CFHR3 3'UTR 0.47 TCGA-AA-3947-01 1 196928086 196928086 A C CFHR2 Missense_Mutation p.Y230S 0.46 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 1 197091290 197091290 T - ASPM Frame_Shift_Del p.K1247Rfs*21 0.25 TCGA-AA-3947-01 1 197614826 197614826 G A DENND1B Silent p.P185P 0.39 TCGA-AA-3947-01 1 19810838 19810838 C T CAPZB Intron 0.16 TCGA-AA-3947-01 1 198505808 198505808 C T ATP6V1G3 Intron 0.36 TCGA-AA-3947-01 1 198700809 198700809 A C PTPRC Missense_Mutation p.K643T 0.05 deleterious(0) probably_damaging(0.979) TCGA-AA-3947-01 1 200529922 200529922 C T KIF14 Silent p.G1386G 0.05 TCGA-AA-3947-01 1 201328371 201328371 G A TNNT2 Silent p.R278R 0.42 TCGA-AA-3947-01 1 201453794 201453794 C T CSRP1 3'UTR 0.46 TCGA-AA-3947-01 1 201750218 201750218 A - NAV1 Frame_Shift_Del p.K483Nfs*9 0.12 TCGA-AA-3947-01 1 201915384 201915384 T G LMOD1 Missense_Mutation p.M29L 0.51 benign(0.281) TCGA-AA-3947-01 1 201980226 201980226 C T ELF3 5'UTR 0.45 TCGA-AA-3947-01 1 20230832 20230832 G A OTUD3 Missense_Mutation p.D227N 0.40 tolerated(0.07) benign(0.005) TCGA-AA-3947-01 1 202777306 202777306 G T KDM5B Missense_Mutation p.A43E 0.38 tolerated(0.77) possibly_damaging(0.599) TCGA-AA-3947-01 1 203317083 203317083 G A FMOD Missense_Mutation p.R106C 0.37 deleterious(0.03) probably_damaging(0.996) TCGA-AA-3947-01 1 203816590 203816590 A - ZC3H11A Frame_Shift_Del p.T443Qfs*2 0.23 TCGA-AA-3947-01 1 204948576 204948576 G A NFASC Missense_Mutation p.V689I 0.33 tolerated(0.5) benign(0.12) TCGA-AA-3947-01 1 205211020 205211020 C T TMCC2 Missense_Mutation p.R199C 0.24 deleterious(0) probably_damaging(0.962) TCGA-AA-3947-01 1 205819088 205819088 C T PM20D1 Missense_Mutation p.R38Q 0.39 tolerated(0.35) benign(0.007) TCGA-AA-3947-01 1 206566199 206566199 C T SRGAP2 Missense_Mutation p.R128C 0.15 deleterious(0) probably_damaging(0.919) TCGA-AA-3947-01 1 207783030 207783030 A T CR1 Missense_Mutation p.R2098W 0.37 deleterious(0) probably_damaging(0.964) TCGA-AA-3947-01 1 208062548 208062548 G A CD34 Silent p.S255S 0.27 TCGA-AA-3947-01 1 20879559 20879559 G A FAM43B Silent p.S31S 0.20 TCGA-AA-3947-01 1 209849423 209849423 C G G0S2 3'UTR 0.17 TCGA-AA-3947-01 1 210857471 210857471 G T KCNH1 Silent p.R708R 0.31 TCGA-AA-3947-01 1 211534447 211534447 T G TRAF5 Silent p.A213A 0.39 TCGA-AA-3947-01 1 21268015 21268015 T C EIF4G3 Silent p.Q494Q 0.39 TCGA-AA-3947-01 1 213224726 213224726 G A RPS6KC1 5'UTR 0.45 TCGA-AA-3947-01 1 213414680 213414680 T A RPS6KC1 Missense_Mutation p.L621M 0.37 tolerated(0.08) benign(0.141) TCGA-AA-3947-01 1 213415975 213415975 C T RPS6KC1 Missense_Mutation p.A962V 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 1 217955579 217955579 C T SPATA17 Missense_Mutation p.R263W 0.37 deleterious(0.03) benign(0.41) TCGA-AA-3947-01 1 217975098 217975098 A G SPATA17 Missense_Mutation p.Y304C 0.06 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 1 220702158 220702158 G A MARK1 5'UTR 0.11 TCGA-AA-3947-01 1 22148750 22148750 A G LDLRAD2 3'UTR 0.19 TCGA-AA-3947-01 1 221879716 221879716 C T DUSP10 Missense_Mutation p.A302T 0.38 tolerated(0.25) benign(0.035) TCGA-AA-3947-01 1 22201196 22201196 C T HSPG2 Silent p.T1147T 0.26 TCGA-AA-3947-01 1 22213982 22213982 A G HSPG2 Missense_Mutation p.C297R 0.19 probably_damaging(1) TCGA-AA-3947-01 1 223568473 223568473 G A C1orf65 Silent p.K552K 0.09 TCGA-AA-3947-01 1 223568738 223568738 A G C1orf65 3'UTR 0.15 TCGA-AA-3947-01 1 223959602 223959602 T G CAPN2 Missense_Mutation p.C665W 0.06 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 1 224491503 224491503 G A NVL Silent p.G294G 0.19 TCGA-AA-3947-01 1 225477612 225477612 A G DNAH14 Missense_Mutation p.K2020R 0.09 tolerated(0.12) benign(0.024) TCGA-AA-3947-01 1 226822296 226822296 A G ITPKB 3'UTR 0.16 TCGA-AA-3947-01 1 226923962 226923962 C T ITPKB Missense_Mutation p.V400M 0.39 tolerated_low_confidence(0.22) benign(0.288) TCGA-AA-3947-01 1 226924618 226924618 C T ITPKB Missense_Mutation p.R181H 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3947-01 1 229460857 229460857 A - CCSAP 3'UTR 0.39 TCGA-AA-3947-01 1 229654132 229654132 G T ABCB10 Missense_Mutation p.L671I 0.06 deleterious(0.01) benign(0.411) TCGA-AA-3947-01 1 229779333 229779333 T G URB2 Missense_Mutation p.L1230V 0.33 tolerated(0.19) probably_damaging(0.994) TCGA-AA-3947-01 1 230468601 230468601 G A PGBD5 Missense_Mutation p.P352L 0.50 deleterious(0.03) benign(0.059) TCGA-AA-3947-01 1 230827255 230827255 A G COG2 Missense_Mutation p.D687G 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 1 231042566 231042566 T C TTC13 3'UTR 0.46 TCGA-AA-3947-01 1 231902894 231902894 G A DISC1 Missense_Mutation p.G426E 0.24 tolerated(0.5) benign(0.341) TCGA-AA-3947-01 1 233334732 233334732 C T PCNXL2 Missense_Mutation p.V1007I 0.38 tolerated(0.61) benign(0) TCGA-AA-3947-01 1 235973203 235973204 - T LYST Frame_Shift_Ins p.N305Kfs*36 0.25 TCGA-AA-3947-01 1 236157046 236157046 G A NID1 Missense_Mutation p.A885V 0.43 tolerated(0.3) benign(0.002) TCGA-AA-3947-01 1 241798095 241798095 T C CHML Missense_Mutation p.Y325C 0.15 deleterious(0) probably_damaging(0.981) TCGA-AA-3947-01 1 241798773 241798773 G C CHML Missense_Mutation p.T99R 0.37 tolerated(0.06) benign(0.003) TCGA-AA-3947-01 1 241912942 241912942 G A WDR64 Missense_Mutation p.R553H 0.06 tolerated(0.33) benign(0.005) TCGA-AA-3947-01 1 242287777 242287777 A G PLD5 Missense_Mutation p.F309S 0.06 deleterious(0) probably_damaging(0.98) TCGA-AA-3947-01 1 243328306 243328306 C T CEP170 Missense_Mutation p.E986K 0.30 deleterious(0) benign(0.201) TCGA-AA-3947-01 1 243349195 243349195 A C CEP170 Silent p.T484T 0.05 TCGA-AA-3947-01 1 244218744 244218744 G A ZBTB18 3'UTR 0.23 TCGA-AA-3947-01 1 244219983 244219983 C T ZBTB18 3'UTR 0.09 TCGA-AA-3947-01 1 24663627 24663627 C - GRHL3 Frame_Shift_Del p.S226Afs*58 0.29 TCGA-AA-3947-01 1 246704314 246704314 A - TFB2M 3'UTR 0.31 TCGA-AA-3947-01 1 246729371 246729371 A - TFB2M Frame_Shift_Del p.C24Afs*3 0.14 TCGA-AA-3947-01 1 247014594 247014594 C T AHCTF1 Missense_Mutation p.D1581N 0.48 deleterious(0) probably_damaging(0.993) TCGA-AA-3947-01 1 247588600 247588600 A - NLRP3 Frame_Shift_Del p.K620Sfs*102 0.08 TCGA-AA-3947-01 1 248487096 248487096 A G OR2M7 Missense_Mutation p.C259R 0.44 deleterious(0) benign(0.001) TCGA-AA-3947-01 1 248551359 248551359 C T OR2T6 Silent p.F150F 0.06 TCGA-AA-3947-01 1 248637327 248637327 A G OR2T3 Missense_Mutation p.I226V 0.20 tolerated(0.13) probably_damaging(0.994) TCGA-AA-3947-01 1 248737383 248737383 T C OR2T34 Missense_Mutation p.I226V 0.15 tolerated(0.13) probably_damaging(0.994) TCGA-AA-3947-01 1 25228901 25228901 G A RUNX3 Silent p.S334S 0.42 TCGA-AA-3947-01 1 25233840 25233840 G A RUNX3 Missense_Mutation p.R219C 0.13 deleterious(0) probably_damaging(0.939) TCGA-AA-3947-01 1 25254126 25254126 G A RUNX3 Silent p.A140A 0.39 TCGA-AA-3947-01 1 25718568 25718568 G A RHCE Missense_Mutation p.A184V 0.36 tolerated(0.06) possibly_damaging(0.584) TCGA-AA-3947-01 1 26073272 26073272 G A MAN1C1 Missense_Mutation p.V251M 0.23 tolerated(0.08) benign(0.14) TCGA-AA-3947-01 1 26107490 26107490 C T MAN1C1 Nonsense_Mutation p.Q513* 0.40 TCGA-AA-3947-01 1 26190120 26190120 C T PAQR7 Missense_Mutation p.E71K 0.35 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 1 26301090 26301090 G A PAFAH2 Silent p.Y270Y 0.07 TCGA-AA-3947-01 1 26526548 26526548 A G CATSPER4 Missense_Mutation p.E329G 0.40 deleterious(0.04) benign(0.033) TCGA-AA-3947-01 1 26527439 26527439 T C CATSPER4 Missense_Mutation p.L369P 0.32 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 1 27058020 27058020 G T ARID1A Missense_Mutation p.Q576H 0.39 benign(0.006) TCGA-AA-3947-01 1 27190850 27190857 GTGTGTGC - SFN 3'UTR 0.14 TCGA-AA-3947-01 1 27685318 27685318 C T MAP3K6 Missense_Mutation p.G822D 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 1 27705910 27705910 C - CD164L2 3'UTR 0.14 TCGA-AA-3947-01 1 27939384 27939384 G A FGR 3'UTR 0.44 TCGA-AA-3947-01 1 28241188 28241188 A T RPA2 5'UTR 0.15 TCGA-AA-3947-01 1 28293668 28293668 T C XKR8 Missense_Mutation p.F382S 0.07 deleterious(0) probably_damaging(0.974) TCGA-AA-3947-01 1 28661264 28661264 G A MED18 Missense_Mutation p.R137H 0.52 tolerated(0.1) benign(0.231) TCGA-AA-3947-01 1 29041380 29041380 T C GMEB1 3'UTR 0.30 TCGA-AA-3947-01 1 29069581 29069581 C - YTHDF2 Frame_Shift_Del p.P268Rfs*2 0.11 TCGA-AA-3947-01 1 29475298 29475303 CTGCGA - SRSF4 In_Frame_Del p.R371_S372del 0.08 TCGA-AA-3947-01 1 32696883 32696883 G T EIF3I 3'UTR 0.33 TCGA-AA-3947-01 1 32800306 32800306 C A MARCKSL1 Missense_Mutation p.E160D 0.46 tolerated(0.06) unknown(0) TCGA-AA-3947-01 1 33160579 33160579 C T SYNC Missense_Mutation p.A374T 0.29 tolerated(0.14) benign(0.192) TCGA-AA-3947-01 1 3328691 3328691 G A PRDM16 Missense_Mutation p.E644K 0.22 tolerated(0.43) benign(0.011) TCGA-AA-3947-01 1 33360323 33360323 G T TMEM54 3'UTR 0.36 TCGA-AA-3947-01 1 33583665 33583665 T C ADC Missense_Mutation p.F398L 0.17 tolerated(0.43) benign(0.001) TCGA-AA-3947-01 1 33799881 33799881 C T PHC2 Missense_Mutation p.G523D 0.08 tolerated(0.21) benign(0.269) TCGA-AA-3947-01 1 3415051 3415051 C T MEGF6 Missense_Mutation p.R1079Q 0.26 deleterious(0) benign(0.047) TCGA-AA-3947-01 1 35452574 35452574 A - ZMYM6 3'Flank 0.18 TCGA-AA-3947-01 1 3563259 3563259 G A WRAP73 Missense_Mutation p.R104C 0.38 deleterious(0) possibly_damaging(0.504) TCGA-AA-3947-01 1 35854548 35854548 C A ZMYM4 Silent p.R767R 0.07 TCGA-AA-3947-01 1 35916039 35916039 G T KIAA0319L Missense_Mutation p.L712M 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3947-01 1 36074882 36074882 A G PSMB2 Missense_Mutation p.L138P 0.37 deleterious(0) probably_damaging(0.958) TCGA-AA-3947-01 1 36282591 36282591 A T AGO4 Missense_Mutation p.D43V 0.43 tolerated(0.07) benign(0.027) TCGA-AA-3947-01 1 36470047 36470047 A G AGO3 Missense_Mutation p.H255R 0.32 deleterious(0.05) benign(0.002) TCGA-AA-3947-01 1 36754721 36754721 C T THRAP3 Silent p.T367T 0.40 TCGA-AA-3947-01 1 37499620 37499620 G A GRIK3 Silent p.R30R 0.27 TCGA-AA-3947-01 1 3761912 3761912 C T CEP104 Missense_Mutation p.A144T 0.28 deleterious(0) possibly_damaging(0.844) TCGA-AA-3947-01 1 37959209 37959210 - A MEAF6 3'UTR 0.42 TCGA-AA-3947-01 1 38006206 38006206 C T SNIP1 Missense_Mutation p.G160R 0.35 tolerated(0.36) benign(0.035) TCGA-AA-3947-01 1 38288175 38288175 G - MTF1 Frame_Shift_Del p.P462Lfs*83 0.26 TCGA-AA-3947-01 1 38409491 38409491 G A INPP5B Missense_Mutation p.S76L 0.36 deleterious(0.02) benign(0.395) TCGA-AA-3947-01 1 40097197 40097197 G A HEYL Missense_Mutation p.R68C 0.07 deleterious(0.01) probably_damaging(0.965) TCGA-AA-3947-01 1 40421017 40421017 C - MFSD2A Frame_Shift_Del p.S19Afs*12 0.10 TCGA-AA-3947-01 1 40882609 40882609 G A SMAP2 Missense_Mutation p.M335I 0.43 tolerated(0.23) benign(0) TCGA-AA-3947-01 1 41236090 41236090 C T NFYC Intron 0.11 TCGA-AA-3947-01 1 42047804 42047804 G A HIVEP3 Missense_Mutation p.R889C 0.18 probably_damaging(0.998) TCGA-AA-3947-01 1 42925370 42925370 G A PPCS Missense_Mutation p.A237T 0.18 tolerated(0.2) benign(0.003) TCGA-AA-3947-01 1 43828742 43828742 G A CDC20 Missense_Mutation p.R481Q 0.36 deleterious(0.02) benign(0.058) TCGA-AA-3947-01 1 43907463 43907463 C A SZT2 Silent p.T2515T 0.53 TCGA-AA-3947-01 1 44126006 44126006 G A KDM4A Missense_Mutation p.E118K 0.21 deleterious(0) possibly_damaging(0.846) TCGA-AA-3947-01 1 45268943 45268943 T C PLK3 Missense_Mutation p.Y318H 0.43 tolerated(0.05) probably_damaging(0.982) TCGA-AA-3947-01 1 45270026 45270026 C - PLK3 Frame_Shift_Del p.L455Wfs*90 0.20 TCGA-AA-3947-01 1 45292921 45292921 C T PTCH2 Missense_Mutation p.R811H 0.33 tolerated(0.11) benign(0.006) TCGA-AA-3947-01 1 45340333 45340333 T G EIF2B3 Intron 0.21 TCGA-AA-3947-01 1 45810995 45810995 G A TESK2 Silent p.G411G 0.34 TCGA-AA-3947-01 1 45973111 45973111 G A MMACHC Silent p.T55T 0.31 TCGA-AA-3947-01 1 46669186 46669186 G A LURAP1 Missense_Mutation p.G30R 0.07 tolerated(0.08) probably_damaging(0.941) TCGA-AA-3947-01 1 46879146 46879146 G A FAAH Missense_Mutation p.V547M 0.36 deleterious(0) possibly_damaging(0.617) TCGA-AA-3947-01 1 47101390 47101390 G A ATPAF1 3'UTR 0.44 TCGA-AA-3947-01 1 47882437 47882437 G A FOXE3 Silent p.A150A 0.14 TCGA-AA-3947-01 1 49201983 49201983 C T BEND5 Missense_Mutation p.V346I 0.36 tolerated(0.13) probably_damaging(0.932) TCGA-AA-3947-01 1 54370407 54370407 T C DIO1 Missense_Mutation p.F136L 0.09 deleterious(0) possibly_damaging(0.861) TCGA-AA-3947-01 1 55081764 55081764 T G FAM151A Missense_Mutation p.H115P 0.24 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 1 55174703 55174703 C T MROH7 Silent p.C1228C 0.30 TCGA-AA-3947-01 1 57422574 57422574 C T C8B Missense_Mutation p.A87T 0.37 tolerated(0.09) benign(0.17) TCGA-AA-3947-01 1 57481035 57481035 A C DAB1 Missense_Mutation p.V322G 0.09 tolerated(0.11) benign(0.023) TCGA-AA-3947-01 1 59042353 59042353 C T TACSTD2 Missense_Mutation p.R159H 0.20 deleterious(0) possibly_damaging(0.855) TCGA-AA-3947-01 1 61824829 61824829 C T NFIA Missense_Mutation p.R322C 0.35 deleterious(0) probably_damaging(0.954) TCGA-AA-3947-01 1 6202223 6202223 C T CHD5 Missense_Mutation p.A801T 0.25 deleterious(0.02) probably_damaging(0.982) TCGA-AA-3947-01 1 62579938 62579938 G T INADL Intron 0.08 TCGA-AA-3947-01 1 62916272 62916272 A - USP1 Frame_Shift_Del p.N662Mfs*2 0.76 TCGA-AA-3947-01 1 6310603 6310603 G A GPR153 Missense_Mutation p.A354V 0.40 deleterious(0.04) benign(0.014) TCGA-AA-3947-01 1 65273154 65273154 A G RAVER2 Silent p.S546S 0.35 TCGA-AA-3947-01 1 65280513 65280513 A G RAVER2 Missense_Mutation p.D627G 0.11 tolerated(0.06) benign(0.234) TCGA-AA-3947-01 1 70339274 70339274 A G LRRC7 Intron 0.40 TCGA-AA-3947-01 1 70697683 70697684 - A SRSF11 Intron 0.22 TCGA-AA-3947-01 1 74836080 74836080 T - FPGT-TNNI3K Intron 0.15 TCGA-AA-3947-01 1 75072334 75072334 T G C1orf173 Missense_Mutation p.K480N 0.04 deleterious(0.02) benign(0.077) TCGA-AA-3947-01 1 76877889 76877890 - A ST6GALNAC3 Frame_Shift_Ins p.N139Kfs*3 0.25 TCGA-AA-3947-01 1 7700472 7700472 G A CAMTA1 Missense_Mutation p.V175I 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3947-01 1 7797386 7797386 G A CAMTA1 Silent p.S1138S 0.47 TCGA-AA-3947-01 1 78163028 78163028 T - USP33 Frame_Shift_Del p.I935Lfs*3 0.08 TCGA-AA-3947-01 1 78340863 78340863 A - FAM73A 3'UTR 0.32 TCGA-AA-3947-01 1 7839801 7839802 - A VAMP3 3'UTR 0.27 TCGA-AA-3947-01 1 78408830 78408830 G - NEXN 3'UTR 0.33 TCGA-AA-3947-01 1 78429978 78429978 T - FUBP1 Frame_Shift_Del p.I301Yfs*22 0.27 TCGA-AA-3947-01 1 8073928 8073928 C T ERRFI1 Missense_Mutation p.R244Q 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3947-01 1 85733523 85733523 C T BCL10 Silent p.T163T 0.09 TCGA-AA-3947-01 1 86591709 86591710 - C COL24A1 Frame_Shift_Ins p.Q104Afs*23 0.24 TCGA-AA-3947-01 1 87200293 87200293 G T SH3GLB1 Missense_Mutation p.Q214H 0.44 tolerated(0.46) possibly_damaging(0.847) TCGA-AA-3947-01 1 874447 874447 G A SAMD11 Missense_Mutation p.R153H 0.36 tolerated(0.57) benign(0.004) TCGA-AA-3947-01 1 89294275 89294275 G T PKN2 Missense_Mutation p.G844V 0.09 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 1 89524576 89524576 T C GBP1 Silent p.G193G 0.37 TCGA-AA-3947-01 1 89525945 89525945 G - GBP1 Frame_Shift_Del p.H85Tfs*9 0.12 TCGA-AA-3947-01 1 9100223 9100223 G A SLC2A5 Silent p.T199T 0.12 TCGA-AA-3947-01 1 91404135 91404135 T A ZNF644 Missense_Mutation p.S926C 0.34 tolerated(0.06) benign(0.345) TCGA-AA-3947-01 1 91784693 91784693 A T HFM1 Nonsense_Mutation p.C918* 0.31 TCGA-AA-3947-01 1 92737202 92737202 A - GLMN Frame_Shift_Del p.L248Yfs*11 0.28 TCGA-AA-3947-01 1 92948984 92948984 G T GFI1 Missense_Mutation p.P21T 0.13 tolerated(0.18) benign(0.018) TCGA-AA-3947-01 1 9323915 9323915 C T H6PD Missense_Mutation p.R455W 0.41 deleterious(0.01) possibly_damaging(0.582) TCGA-AA-3947-01 1 9416315 9416315 C - SPSB1 Frame_Shift_Del p.L124Cfs*56 0.25 TCGA-AA-3947-01 1 94650983 94650983 G A ARHGAP29 Missense_Mutation p.T612I 0.19 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 1 9667814 9667814 T C TMEM201 Missense_Mutation p.S454P 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3947-01 1 9673080 9673080 C T TMEM201 Missense_Mutation p.A647V 0.35 tolerated(0.06) benign(0.113) TCGA-AA-3947-01 1 98186336 98186336 A G DPYD Intron 0.07 TCGA-AA-3947-01 1 984948 984948 C T AGRN Missense_Mutation p.A1506V 0.08 tolerated(1) benign(0.038) TCGA-AA-3947-01 20 10277646 10277646 C T SNAP25 Missense_Mutation p.R119C 0.47 deleterious(0) probably_damaging(0.976) TCGA-AA-3947-01 20 10629720 10629720 C T JAG1 Missense_Mutation p.A462T 0.33 deleterious(0) possibly_damaging(0.677) TCGA-AA-3947-01 20 13071817 13071817 G A SPTLC3 Missense_Mutation p.A232T 0.07 deleterious(0) probably_damaging(0.99) TCGA-AA-3947-01 20 13279713 13279713 G A ISM1 Silent p.T334T 0.32 TCGA-AA-3947-01 20 1349639 1349639 A G FKBP1A 3'UTR 0.10 TCGA-AA-3947-01 20 13610666 13610666 A T TASP1 Silent p.V20V 0.35 TCGA-AA-3947-01 20 13765886 13765886 T C NDUFAF5 Missense_Mutation p.W58R 0.28 tolerated(1) benign(0.02) TCGA-AA-3947-01 20 1552456 1552456 C T SIRPB1 Missense_Mutation p.V221I 0.37 tolerated(0.11) benign(0.015) TCGA-AA-3947-01 20 16486415 16486415 A G KIF16B Silent p.L318L 0.06 TCGA-AA-3947-01 20 17716439 17716439 T C BANF2 Missense_Mutation p.C93R 0.32 deleterious(0.02) probably_damaging(0.962) TCGA-AA-3947-01 20 1961521 1961521 G - PDYN Frame_Shift_Del p.S72Pfs*32 0.10 TCGA-AA-3947-01 20 20020253 20020253 C A CRNKL1 Missense_Mutation p.E676D 0.17 tolerated(0.05) probably_damaging(0.968) TCGA-AA-3947-01 20 21327098 21327098 T C XRN2 Silent p.F525F 0.20 TCGA-AA-3947-01 20 21494072 21494072 C T NKX2-2 Missense_Mutation p.S79N 0.19 tolerated(0.28) benign(0.002) TCGA-AA-3947-01 20 21687573 21687573 C T PAX1 Missense_Mutation p.P262S 0.16 tolerated(0.13) benign(0.027) TCGA-AA-3947-01 20 23016593 23016593 G A SSTR4 Missense_Mutation p.R158Q 0.42 deleterious(0) benign(0.377) TCGA-AA-3947-01 20 23066727 23066727 C T CD93 Missense_Mutation p.A35T 0.48 tolerated(0.07) probably_damaging(1) TCGA-AA-3947-01 20 23420933 23420933 T C CSTL1 Missense_Mutation p.L10P 0.05 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 20 24949640 24949640 G T APMAP Missense_Mutation p.P310H 0.49 tolerated(0.2) benign(0.345) TCGA-AA-3947-01 20 25398741 25398741 G A GINS1 Silent p.L80L 0.36 TCGA-AA-3947-01 20 25657239 25657239 T G ZNF337 Missense_Mutation p.T229P 0.23 tolerated(0.08) probably_damaging(0.954) TCGA-AA-3947-01 20 3018898 3018898 G T PTPRA 3'UTR 0.29 TCGA-AA-3947-01 20 30789968 30789968 A - PLAGL2 Frame_Shift_Del p.F5Sfs*21 0.11 TCGA-AA-3947-01 20 30822557 30822557 A G POFUT1 3'UTR 0.25 TCGA-AA-3947-01 20 31619461 31619461 G A BPIFB6 Missense_Mutation p.R3Q 0.33 tolerated_low_confidence(0.35) unknown(0) TCGA-AA-3947-01 20 32878409 32878409 C G AHCY Missense_Mutation p.E268Q 0.47 tolerated_low_confidence(0.24) benign(0.045) TCGA-AA-3947-01 20 33440050 33440050 C T GGT7 Missense_Mutation p.G499S 0.34 tolerated(0.09) probably_damaging(0.945) TCGA-AA-3947-01 20 33447370 33447370 C T GGT7 Missense_Mutation p.R297H 0.33 tolerated(0.3) benign(0.004) TCGA-AA-3947-01 20 33460585 33460585 C T GGT7 Missense_Mutation p.A12T 0.15 tolerated_low_confidence(1) benign(0.002) TCGA-AA-3947-01 20 33565798 33565798 G A MYH7B Missense_Mutation p.S39N 0.17 possibly_damaging(0.682) TCGA-AA-3947-01 20 33568984 33568984 G A MYH7B Intron 0.38 TCGA-AA-3947-01 20 33589874 33589874 G A MYH7B Missense_Mutation p.A1976T 0.33 benign(0.008) TCGA-AA-3947-01 20 33891828 33891828 T G UQCC1 Silent p.T270T 0.26 TCGA-AA-3947-01 20 34025504 34025504 C - GDF5 Frame_Shift_Del p.A69Pfs*18 0.27 TCGA-AA-3947-01 20 34099219 34099219 T C CEP250 Silent p.L2365L 0.16 TCGA-AA-3947-01 20 34797635 34797635 G A EPB41L1 Missense_Mutation p.A632T 0.36 tolerated(0.09) possibly_damaging(0.496) TCGA-AA-3947-01 20 34817371 34817371 C T EPB41L1 3'UTR 0.33 TCGA-AA-3947-01 20 3571903 3571903 C G ATRN Missense_Mutation p.T1091S 0.45 tolerated(0.64) benign(0.009) TCGA-AA-3947-01 20 36022386 36022386 C A SRC Missense_Mutation p.Q147K 0.09 deleterious(0.04) possibly_damaging(0.88) TCGA-AA-3947-01 20 36641831 36641831 A G TTI1 Silent p.L130L 0.21 TCGA-AA-3947-01 20 36917523 36917523 G A CTD-2308N23.2 Intron 0.36 TCGA-AA-3947-01 20 36919772 36919772 A G CTD-2308N23.2 Intron 0.10 TCGA-AA-3947-01 20 37464746 37464746 C T PPP1R16B Missense_Mutation p.R60C 0.35 deleterious(0.01) possibly_damaging(0.809) TCGA-AA-3947-01 20 3766820 3766820 G A CENPB Missense_Mutation p.A104V 0.29 deleterious(0) unknown(0) TCGA-AA-3947-01 20 39986621 39986621 C - LPIN3 Frame_Shift_Del p.K715Rfs*19 0.29 TCGA-AA-3947-01 20 40739003 40739003 G - PTPRT Frame_Shift_Del p.P1075Rfs*6 0.34 TCGA-AA-3947-01 20 422307 422307 T G TBC1D20 Missense_Mutation p.N184T 0.07 tolerated(0.1) possibly_damaging(0.542) TCGA-AA-3947-01 20 43052737 43052737 C T HNF4A Silent p.N324N 0.30 TCGA-AA-3947-01 20 43248963 43248963 C A ADA Missense_Mutation p.G352V 0.48 deleterious(0) possibly_damaging(0.75) TCGA-AA-3947-01 20 43379116 43379116 C T KCNK15 Silent p.S210S 0.14 TCGA-AA-3947-01 20 43836621 43836621 A C SEMG1 Missense_Mutation p.E228A 0.35 tolerated(0.26) probably_damaging(0.997) TCGA-AA-3947-01 20 43943133 43943133 G A RBPJL Silent p.Q316Q 0.43 TCGA-AA-3947-01 20 43945566 43945566 G A RBPJL Silent p.T507T 0.31 TCGA-AA-3947-01 20 44519048 44519048 A - NEURL2 Frame_Shift_Del p.C195Afs*63 0.28 TCGA-AA-3947-01 20 44640341 44640341 G A MMP9 Missense_Mutation p.A318T 0.33 tolerated(0.13) benign(0.018) TCGA-AA-3947-01 20 44692031 44692031 C A NCOA5 Missense_Mutation p.R373L 0.35 deleterious(0) probably_damaging(0.935) TCGA-AA-3947-01 20 44746964 44746964 C A CD40 5'UTR 0.18 TCGA-AA-3947-01 20 45129973 45129973 A C ZNF334 Missense_Mutation p.S669A 0.40 deleterious(0.01) probably_damaging(0.956) TCGA-AA-3947-01 20 4682184 4682184 T A PRNP 3'UTR 0.24 TCGA-AA-3947-01 20 4837783 4837783 G A SLC23A2 Silent p.D596D 0.06 TCGA-AA-3947-01 20 50701516 50701516 G A ZFP64 Silent p.S506S 0.11 TCGA-AA-3947-01 20 50769489 50769489 C T ZFP64 Silent p.R414R 0.10 TCGA-AA-3947-01 20 57245599 57245599 T - STX16 Frame_Shift_Del p.F198Sfs*7 0.25 TCGA-AA-3947-01 20 57769115 57769115 A T ZNF831 Missense_Mutation p.Q1014L 0.46 tolerated(0.67) benign(0) TCGA-AA-3947-01 20 60348222 60348222 C T CDH4 Missense_Mutation p.P187L 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-AA-3947-01 20 60714780 60714780 G A PSMA7 Intron 0.11 TCGA-AA-3947-01 20 61512074 61512074 C - DIDO1 Frame_Shift_Del p.G1745Afs*119 0.18 TCGA-AA-3947-01 20 61513456 61513456 G - DIDO1 Frame_Shift_Del p.S1285Afs*76 0.27 TCGA-AA-3947-01 20 61919281 61919281 C T ARFGAP1 3'UTR 0.55 TCGA-AA-3947-01 20 62166351 62166351 C T PTK6 Missense_Mutation p.A98T 0.10 tolerated(0.38) benign(0.004) TCGA-AA-3947-01 20 62173547 62173547 C T SRMS Missense_Mutation p.M305I 0.07 deleterious(0.03) benign(0.284) TCGA-AA-3947-01 20 62195545 62195545 C T HELZ2 Missense_Mutation p.E1544K 0.37 tolerated(0.4) benign(0.024) TCGA-AA-3947-01 20 62196967 62196967 C T HELZ2 Missense_Mutation p.A1070T 0.46 tolerated(0.28) benign(0.067) TCGA-AA-3947-01 20 62227004 62227004 G A GMEB2 Missense_Mutation p.T193M 0.36 tolerated(0.07) possibly_damaging(0.518) TCGA-AA-3947-01 20 62373285 62373285 G A SLC2A4RG Missense_Mutation p.S152N 0.37 tolerated(0.16) benign(0.027) TCGA-AA-3947-01 20 62421650 62421650 G A ZBTB46 Missense_Mutation p.T154M 0.54 tolerated(0.12) possibly_damaging(0.479) TCGA-AA-3947-01 20 62598777 62598777 T C ZNF512B Missense_Mutation p.K74R 0.10 deleterious(0) probably_damaging(0.995) TCGA-AA-3947-01 20 62737557 62737557 T C NPBWR2 Missense_Mutation p.K210E 0.27 deleterious(0.04) benign(0.197) TCGA-AA-3947-01 20 7921040 7921040 A G HAO1 Silent p.D10D 0.10 TCGA-AA-3947-01 20 8696897 8696897 T C PLCB1 Intron 0.07 TCGA-AA-3947-01 20 9498833 9498833 A C LAMP5 Missense_Mutation p.I208L 0.13 tolerated(0.7) benign(0.019) TCGA-AA-3947-01 21 10951310 10951310 G A TPTE Silent p.A134A 0.06 TCGA-AA-3947-01 21 15481208 15481208 A C LIPI 3'UTR 0.50 TCGA-AA-3947-01 21 16339766 16339766 T - NRIP1 Frame_Shift_Del p.R250Gfs*17 0.19 TCGA-AA-3947-01 21 16340770 16340770 A C NRIP1 5'UTR 0.17 TCGA-AA-3947-01 21 19653392 19653392 G A TMPRSS15 Missense_Mutation p.A878V 0.44 tolerated(0.1) benign(0.232) TCGA-AA-3947-01 21 31768612 31768612 T C KRTAP13-1 Missense_Mutation p.Y70H 0.38 tolerated(0.19) benign(0.001) TCGA-AA-3947-01 21 32007651 32007651 C A KRTAP20-2 Silent p.G23G 0.24 TCGA-AA-3947-01 21 32493120 32493120 G T TIAM1 Silent p.R1448R 0.48 TCGA-AA-3947-01 21 32508317 32508317 C T TIAM1 Missense_Mutation p.V1273M 0.43 deleterious(0) probably_damaging(0.984) TCGA-AA-3947-01 21 33044593 33044593 C T SCAF4 Missense_Mutation p.G855S 0.07 unknown(0) TCGA-AA-3947-01 21 33064187 33064187 A G SCAF4 Silent p.Y557Y 0.09 TCGA-AA-3947-01 21 34537822 34537822 T - C21orf54 3'UTR 0.21 TCGA-AA-3947-01 21 34793919 34793919 A G IFNGR2 Silent p.L113L 0.07 TCGA-AA-3947-01 21 34950535 34950535 C A DONSON 3'UTR 0.50 TCGA-AA-3947-01 21 35186248 35186248 A G ITSN1 Missense_Mutation p.T867A 0.09 tolerated(0.6) benign(0.146) TCGA-AA-3947-01 21 35257409 35257409 C T ITSN1 Missense_Mutation p.R1581C 0.51 deleterious(0) probably_damaging(0.971) TCGA-AA-3947-01 21 35774505 35774505 T C C21orf140 5'Flank 0.28 TCGA-AA-3947-01 21 37788591 37788591 A G CHAF1B Missense_Mutation p.Q536R 0.19 tolerated_low_confidence(0.53) benign(0.001) TCGA-AA-3947-01 21 39671475 39671475 G A KCNJ15 Missense_Mutation p.G98S 0.11 tolerated(0.53) benign(0.001) TCGA-AA-3947-01 21 40547514 40547514 G A PSMG1 3'UTR 0.11 TCGA-AA-3947-01 21 41516640 41516640 G A DSCAM Nonsense_Mutation p.Q1013* 0.38 TCGA-AA-3947-01 21 43833327 43833327 A G UBASH3A Silent p.L183L 0.28 TCGA-AA-3947-01 21 43916388 43916388 G A RSPH1 5'UTR 0.35 TCGA-AA-3947-01 21 43979129 43979129 T C SLC37A1 Missense_Mutation p.V304A 0.29 tolerated(0.48) benign(0.217) TCGA-AA-3947-01 21 45544508 45544508 C T PWP2 Missense_Mutation p.A622V 0.38 deleterious(0) benign(0.221) TCGA-AA-3947-01 21 45565469 45565469 C T C21orf33 3'UTR 0.13 TCGA-AA-3947-01 21 45717653 45717655 AGA - AIRE 3'UTR 0.50 TCGA-AA-3947-01 21 45786736 45786736 G - TRPM2 Frame_Shift_Del p.A177Pfs*6 0.29 TCGA-AA-3947-01 21 46021206 46021206 T C KRTAP10-7 Missense_Mutation p.C229R 0.27 deleterious(0.02) unknown(0) TCGA-AA-3947-01 21 46074243 46074243 G T KRTAP12-4 Missense_Mutation p.P97T 0.39 tolerated(0.13) probably_damaging(0.958) TCGA-AA-3947-01 21 46320234 46320234 C T ITGB2 Splice_Site p.X299_splice 0.32 TCGA-AA-3947-01 21 46354133 46354133 C T C21orf67 3'Flank 0.09 TCGA-AA-3947-01 21 46596173 46596173 C T ADARB1 Missense_Mutation p.A186V 0.47 tolerated(0.54) benign(0.001) TCGA-AA-3947-01 21 46842371 46842371 T A COL18A1-AS1 RNA 0.44 TCGA-AA-3947-01 21 47662805 47662805 A T MCM3AP Missense_Mutation p.F1779L 0.31 tolerated(0.52) benign(0.097) TCGA-AA-3947-01 21 48084246 48084246 A G PRMT2 3'UTR 0.30 TCGA-AA-3947-01 22 16287338 16287338 G A POTEH Missense_Mutation p.A183V 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3947-01 22 16287698 16287698 T C POTEH Missense_Mutation p.K63R 0.07 tolerated_low_confidence(0.12) unknown(0) TCGA-AA-3947-01 22 17619152 17619152 C - CECR5 Frame_Shift_Del p.G344Afs*61 0.26 TCGA-AA-3947-01 22 17979749 17979751 AGG - CECR2 In_Frame_Del p.E172del 0.15 TCGA-AA-3947-01 22 18354658 18354658 G A MICAL3 Silent p.C791C 0.22 TCGA-AA-3947-01 22 19120095 19120095 G A TSSK2 3'UTR 0.09 TCGA-AA-3947-01 22 20024454 20024454 C T TANGO2 Intron 0.41 TCGA-AA-3947-01 22 20024560 20024560 C T TANGO2 Intron 0.38 TCGA-AA-3947-01 22 20074776 20074776 G A DGCR8 Missense_Mutation p.S271N 0.06 tolerated(0.08) probably_damaging(0.993) TCGA-AA-3947-01 22 20723763 20723763 G A USP41 Nonsense_Mutation p.R195* 0.37 TCGA-AA-3947-01 22 21150562 21150562 C T PI4KA Missense_Mutation p.A717T 0.55 deleterious(0) probably_damaging(0.935) TCGA-AA-3947-01 22 21178691 21178691 C T PI4KA Missense_Mutation p.V127I 0.26 tolerated(0.22) benign(0.005) TCGA-AA-3947-01 22 21334389 21334389 G A AIFM3 Missense_Mutation p.R578H 0.16 deleterious(0) possibly_damaging(0.72) TCGA-AA-3947-01 22 21345925 21345925 G A LZTR1 Missense_Mutation p.R267H 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3947-01 22 21351546 21351546 C T LZTR1 Missense_Mutation p.S811L 0.42 tolerated(0.36) benign(0.001) TCGA-AA-3947-01 22 21409403 21409403 G A AC002472.13 Missense_Mutation p.A289T 0.38 tolerated(0.44) benign(0.045) TCGA-AA-3947-01 22 21799260 21799260 C T HIC2 Missense_Mutation p.P26S 0.12 deleterious(0.05) possibly_damaging(0.641) TCGA-AA-3947-01 22 21799326 21799326 G A HIC2 Missense_Mutation p.V48I 0.08 deleterious(0) benign(0.312) TCGA-AA-3947-01 22 21800083 21800083 G A HIC2 Missense_Mutation p.G300D 0.45 tolerated(0.18) probably_damaging(0.931) TCGA-AA-3947-01 22 21991043 21991043 G A CCDC116 Missense_Mutation p.R509Q 0.26 tolerated(0.53) benign(0.005) TCGA-AA-3947-01 22 22326264 22326264 C A TOP3B Missense_Mutation p.E123D 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 22 22385664 22385664 C T IGLV4-69 Silent p.Y51Y 0.28 TCGA-AA-3947-01 22 22842637 22842637 C T ZNF280B Missense_Mutation p.E363K 0.36 deleterious(0) possibly_damaging(0.449) TCGA-AA-3947-01 22 23248791 23248791 G T IGLC3 Missense_Mutation p.S94I 0.10 benign(0.066) TCGA-AA-3947-01 22 23744281 23744282 - G ZDHHC8P1 Intron 0.26 TCGA-AA-3947-01 22 24302513 24302513 C T GSTT2B Silent p.T56T 0.11 TCGA-AA-3947-01 22 24323194 24323194 G A GSTT2 Silent p.T56T 0.04 TCGA-AA-3947-01 22 24572103 24572103 C T CABIN1 Missense_Mutation p.A2022V 0.41 tolerated_low_confidence(0.29) benign(0.001) TCGA-AA-3947-01 22 26272207 26272207 G A MYO18B Missense_Mutation p.A1378T 0.07 tolerated(0.05) benign(0.049) TCGA-AA-3947-01 22 26743798 26743798 G A SEZ6L Missense_Mutation p.G776S 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 22 28195587 28195587 C A MN1 Missense_Mutation p.E315D 0.35 possibly_damaging(0.561) TCGA-AA-3947-01 22 29704290 29704290 T C GAS2L1 Silent p.H65H 0.18 TCGA-AA-3947-01 22 29886319 29886319 C A NEFH Missense_Mutation p.A897D 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3947-01 22 30690043 30690043 C T TBC1D10A Silent p.P261P 0.41 TCGA-AA-3947-01 22 30951873 30951873 A G GAL3ST1 Silent p.N113N 0.22 TCGA-AA-3947-01 22 31042864 31042864 G A SLC35E4 Missense_Mutation p.R300Q 0.07 tolerated(0.59) benign(0.123) TCGA-AA-3947-01 22 31484003 31484003 G C SMTN Missense_Mutation p.R35P 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 22 31484004 31484004 G T SMTN Silent p.R35R 0.40 TCGA-AA-3947-01 22 31674448 31674448 G - LIMK2 3'Flank 0.14 TCGA-AA-3947-01 22 32257418 32257418 A G DEPDC5 Missense_Mutation p.Q1101R 0.24 tolerated_low_confidence(0.14) benign(0.113) TCGA-AA-3947-01 22 32480499 32480499 T C SLC5A1 Silent p.D246D 0.09 TCGA-AA-3947-01 22 33402393 33402393 C T SYN3 Silent p.T85T 0.18 TCGA-AA-3947-01 22 35689038 35689038 T C HMGXB4 Silent p.C564C 0.43 TCGA-AA-3947-01 22 36122332 36122332 A G APOL5 Missense_Mutation p.M73V 0.07 tolerated(1) benign(0) TCGA-AA-3947-01 22 36164391 36164391 G A RBFOX2 Silent p.F223F 0.08 TCGA-AA-3947-01 22 36701978 36701978 C T MYH9 Silent p.Q719Q 0.41 TCGA-AA-3947-01 22 36744972 36744972 G A MYH9 Missense_Mutation p.R104C 0.16 probably_damaging(1) TCGA-AA-3947-01 22 36960360 36960360 G A CACNG2 3'UTR 0.50 TCGA-AA-3947-01 22 37267729 37267729 G A NCF4 Missense_Mutation p.R169H 0.08 tolerated(0.11) benign(0.003) TCGA-AA-3947-01 22 37333573 37333573 G T CSF2RB Missense_Mutation p.A575S 0.29 tolerated(0.15) benign(0.284) TCGA-AA-3947-01 22 37333632 37333632 G - CSF2RB Frame_Shift_Del p.P596Rfs*102 0.27 TCGA-AA-3947-01 22 37628841 37628841 C T RAC2 Silent p.T75T 0.19 TCGA-AA-3947-01 22 37770516 37770516 C T ELFN2 Silent p.A353A 0.13 TCGA-AA-3947-01 22 37900667 37900667 A G CARD10 Missense_Mutation p.M498T 0.41 tolerated(0.72) benign(0) TCGA-AA-3947-01 22 38046717 38046717 C T SH3BP1 Missense_Mutation p.A528V 0.16 tolerated(0.77) benign(0.002) TCGA-AA-3947-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.31 TCGA-AA-3947-01 22 38153730 38153730 C A TRIOBP Missense_Mutation p.P1933H 0.38 tolerated(0.1) possibly_damaging(0.885) TCGA-AA-3947-01 22 38340193 38340193 C T C22orf23 Missense_Mutation p.A215T 0.36 tolerated_low_confidence(0.07) benign(0.058) TCGA-AA-3947-01 22 38370168 38370168 C T SOX10 Silent p.P245P 0.30 TCGA-AA-3947-01 22 38823701 38823701 C A KCNJ4 Missense_Mutation p.C146F 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 22 39711276 39711276 T C RPL3 Intron 0.27 TCGA-AA-3947-01 22 39884131 39884131 G A MGAT3 Missense_Mutation p.G260D 0.49 deleterious(0.01) benign(0.444) TCGA-AA-3947-01 22 39925602 39925602 C A RPS19BP1 Missense_Mutation p.K102N 0.16 deleterious(0) probably_damaging(0.982) TCGA-AA-3947-01 22 40364136 40364136 C T GRAP2 Missense_Mutation p.R184W 0.38 deleterious(0.03) possibly_damaging(0.513) TCGA-AA-3947-01 22 40417671 40417671 C A FAM83F Missense_Mutation p.P386H 0.15 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 22 40757501 40757501 C T ADSL Missense_Mutation p.A291V 0.28 deleterious(0) benign(0.327) TCGA-AA-3947-01 22 41077724 41077724 C T MCHR1 Missense_Mutation p.P354L 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3947-01 22 42086546 42086546 C T NHP2L1 5'Flank 0.50 TCGA-AA-3947-01 22 42536348 42536348 G A NDUFA6-AS1 3'Flank 0.35 TCGA-AA-3947-01 22 42606139 42606139 A - TCF20 Frame_Shift_Del p.Y1725Ifs*157 0.28 TCGA-AA-3947-01 22 42908887 42908887 C A RRP7A 3'UTR 0.07 TCGA-AA-3947-01 22 43089189 43089189 C A A4GALT Missense_Mutation p.V257F 0.43 deleterious(0) probably_damaging(0.969) TCGA-AA-3947-01 22 43606132 43606132 T C SCUBE1 Missense_Mutation p.K833R 0.10 tolerated(0.05) probably_damaging(0.999) TCGA-AA-3947-01 22 44287045 44287045 G T PNPLA5 Missense_Mutation p.A108D 0.10 deleterious(0.03) possibly_damaging(0.717) TCGA-AA-3947-01 22 45133196 45133196 T A PRR5 3'UTR 0.43 TCGA-AA-3947-01 22 45574147 45574147 C A NUP50 Silent p.T123T 0.32 TCGA-AA-3947-01 22 45828169 45828169 A T RIBC2 Missense_Mutation p.K354I 0.06 tolerated(0.31) benign(0.017) TCGA-AA-3947-01 22 46345824 46345824 C T WNT7B Missense_Mutation p.V92I 0.42 tolerated(0.19) benign(0.206) TCGA-AA-3947-01 22 46785308 46785308 G A CELSR1 Missense_Mutation p.T2145M 0.12 tolerated(0.14) benign(0.219) TCGA-AA-3947-01 22 46835284 46835284 C T CELSR1 Missense_Mutation p.R1403H 0.26 deleterious(0.03) benign(0.212) TCGA-AA-3947-01 22 47103788 47103788 G - CERK Frame_Shift_Del p.R223Gfs*94 0.28 TCGA-AA-3947-01 22 50181173 50181175 GAG - BRD1 Intron 0.25 TCGA-AA-3947-01 22 50216671 50216671 T - BRD1 Frame_Shift_Del p.K432Rfs*26 0.15 TCGA-AA-3947-01 22 50283393 50283393 C T ZBED4 3'UTR 0.08 TCGA-AA-3947-01 22 50589273 50589273 C T MOV10L1 Missense_Mutation p.A946V 0.09 tolerated(0.29) benign(0.014) TCGA-AA-3947-01 22 50718980 50718980 C T PLXNB2 Silent p.T1371T 0.31 TCGA-AA-3947-01 22 50988789 50988790 AG - KLHDC7B 3'UTR 0.23 TCGA-AA-3947-01 2 100006681 100006681 G T EIF5B Splice_Site p.X802_splice 0.38 TCGA-AA-3947-01 2 101655075 101655075 G A TBC1D8 Missense_Mutation p.H360Y 0.43 deleterious(0.02) benign(0.065) TCGA-AA-3947-01 2 102314563 102314563 A - MAP4K4 Frame_Shift_Del p.S9Vfs*62 0.09 TCGA-AA-3947-01 2 103068675 103068675 T C IL18RAP 3'UTR 0.42 TCGA-AA-3947-01 2 103095639 103095639 G A SLC9A4 Missense_Mutation p.G200S 0.20 tolerated(0.06) probably_damaging(0.995) TCGA-AA-3947-01 2 106498383 106498383 T C NCK2 Missense_Mutation p.S276P 0.32 tolerated(0.28) benign(0.024) TCGA-AA-3947-01 2 108604639 108604639 G A SLC5A7 Missense_Mutation p.A10T 0.07 deleterious(0.02) benign(0.41) TCGA-AA-3947-01 2 10929027 10929027 A G PDIA6 Silent p.D307D 0.43 TCGA-AA-3947-01 2 11053011 11053011 C T KCNF1 Silent p.G153G 0.24 TCGA-AA-3947-01 2 111144485 111144485 C A LINC01106 5'Flank 0.10 TCGA-AA-3947-01 2 113060881 113060881 A - ZC3H6 Frame_Shift_Del p.R99Efs*23 0.29 TCGA-AA-3947-01 2 113089696 113089696 A G ZC3H6 Silent p.S1067S 0.06 TCGA-AA-3947-01 2 114257020 114257020 C T FOXD4L1 Missense_Mutation p.R63W 0.74 deleterious(0.01) possibly_damaging(0.642) TCGA-AA-3947-01 2 11800178 11800178 G A NTSR2 Missense_Mutation p.A327V 0.43 tolerated(0.28) benign(0.016) TCGA-AA-3947-01 2 118588353 118588353 T C DDX18 3'UTR 0.09 TCGA-AA-3947-01 2 118705736 118705736 A G CCDC93 Missense_Mutation p.V390A 0.07 deleterious(0.01) possibly_damaging(0.867) TCGA-AA-3947-01 2 11905843 11905843 G A LPIN1 Missense_Mutation p.R108H 0.10 deleterious(0.04) probably_damaging(0.973) TCGA-AA-3947-01 2 120125044 120125044 G T DBI Missense_Mutation p.Q44H 0.36 tolerated_low_confidence(0.14) benign(0.002) TCGA-AA-3947-01 2 120932530 120932530 T C EPB41L5 3'UTR 0.07 TCGA-AA-3947-01 2 122125291 122125291 C T CLASP1 Silent p.P1253P 0.47 TCGA-AA-3947-01 2 125521670 125521670 G A CNTNAP5 Missense_Mutation p.G826R 0.37 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 2 127413872 127413872 G A GYPC Silent p.A11A 0.39 TCGA-AA-3947-01 2 127453731 127453731 T G GYPC 3'UTR 0.10 TCGA-AA-3947-01 2 127808053 127808053 G T BIN1 Missense_Mutation p.Q540K 0.37 deleterious(0.05) benign(0.137) TCGA-AA-3947-01 2 128525824 128525824 A G WDR33 Missense_Mutation p.V106A 0.11 deleterious(0.01) unknown(0) TCGA-AA-3947-01 2 130725825 130725825 A G RAB6C-AS1 RNA 0.37 TCGA-AA-3947-01 2 130910194 130910194 C A SMPD4 Silent p.L845L 0.07 TCGA-AA-3947-01 2 130939973 130939973 C T MZT2B Silent p.L40L 0.34 TCGA-AA-3947-01 2 131673731 131673731 C T ARHGEF4 5'Flank 0.13 TCGA-AA-3947-01 2 132021340 132021340 T C POTEE Missense_Mutation p.M771T 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.539) TCGA-AA-3947-01 2 132241741 132241741 G A MZT2A Missense_Mutation p.R124C 0.22 tolerated(0.08) benign(0.124) TCGA-AA-3947-01 2 135215692 135215692 C T TMEM163 Silent p.A240A 0.09 TCGA-AA-3947-01 2 135711242 135711242 T A CCNT2 Missense_Mutation p.V406D 0.38 deleterious(0.05) benign(0.051) TCGA-AA-3947-01 2 136073066 136073066 C T ZRANB3 Missense_Mutation p.G238R 0.46 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 2 136540450 136540450 A C UBXN4 Missense_Mutation p.Q507P 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 2 138000091 138000091 A T THSD7B Missense_Mutation p.I739F 0.40 deleterious(0.01) benign(0.402) TCGA-AA-3947-01 2 138030146 138030146 A C THSD7B Missense_Mutation p.Q770H 0.08 deleterious(0) benign(0.387) TCGA-AA-3947-01 2 149402683 149402683 T A EPC2 Missense_Mutation p.S33T 0.40 tolerated(0.07) benign(0.345) TCGA-AA-3947-01 2 152483635 152483635 C A NEB Missense_Mutation p.A3410S 0.38 probably_damaging(0.999) TCGA-AA-3947-01 2 152536488 152536488 G A NEB Missense_Mutation p.P1031S 0.35 possibly_damaging(0.566) TCGA-AA-3947-01 2 152580800 152580800 C T NEB Missense_Mutation p.V196I 0.37 benign(0.023) TCGA-AA-3947-01 2 158115519 158115519 G T GALNT5 Missense_Mutation p.G309W 0.17 deleterious(0.01) possibly_damaging(0.502) TCGA-AA-3947-01 2 158178061 158178062 - ATC ERMN In_Frame_Ins p.D205dup 0.38 TCGA-AA-3947-01 2 160257169 160257169 T - BAZ2B Frame_Shift_Del p.I947Lfs*19 0.08 TCGA-AA-3947-01 2 160843841 160843841 T C PLA2R1 Silent p.R621R 0.40 TCGA-AA-3947-01 2 162851841 162851841 A G DPP4 Silent p.V698V 0.09 TCGA-AA-3947-01 2 162929994 162929994 T A DPP4 Silent p.T3T 0.08 TCGA-AA-3947-01 2 163216843 163216843 C A GCA 3'UTR 0.10 TCGA-AA-3947-01 2 165578781 165578781 C T COBLL1 Missense_Mutation p.R267H 0.05 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 2 165986674 165986674 C T SCN3A Missense_Mutation p.G900S 0.34 deleterious(0) possibly_damaging(0.858) TCGA-AA-3947-01 2 166245864 166245864 G A SCN2A Missense_Mutation p.D1850N 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3947-01 2 167298159 167298159 A G SCN7A Missense_Mutation p.F635S 0.20 tolerated(0.06) benign(0.064) TCGA-AA-3947-01 2 169551512 169551512 C G CERS6 Missense_Mutation p.S187W 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 2 169718554 169718554 A - NOSTRIN Frame_Shift_Del p.K518Rfs*5 0.19 TCGA-AA-3947-01 2 169780221 169780221 C - ABCB11 Frame_Shift_Del p.V1293Wfs*2 0.14 TCGA-AA-3947-01 2 170076988 170076988 C T LRP2 Missense_Mutation p.G1875D 0.06 probably_damaging(0.95) TCGA-AA-3947-01 2 170112696 170112696 C A LRP2 Missense_Mutation p.S897I 0.31 benign(0.348) TCGA-AA-3947-01 2 170937166 170937166 G A UBR3 Missense_Mutation p.A1841T 0.18 tolerated(0.19) probably_damaging(0.995) TCGA-AA-3947-01 2 172378986 172378986 C A CYBRD1 5'UTR 0.50 TCGA-AA-3947-01 2 174228118 174228118 C T CDCA7 Silent p.S183S 0.38 TCGA-AA-3947-01 2 176959552 176959552 C - HOXD13 3'UTR 0.24 TCGA-AA-3947-01 2 178326734 178326734 T C AGPS Silent p.N328N 0.08 TCGA-AA-3947-01 2 178483255 178483255 G A TTC30A Nonsense_Mutation p.Q59* 0.14 TCGA-AA-3947-01 2 179433591 179433591 T C TTN Silent p.A25756A 0.20 TCGA-AA-3947-01 2 179529425 179529425 G A TTN Missense_Mutation p.T12053M 0.20 TCGA-AA-3947-01 2 179545033 179545033 G A TTN Silent p.V11122V 0.30 TCGA-AA-3947-01 2 179604833 179604833 T C TTN Missense_Mutation p.D4376G 0.16 TCGA-AA-3947-01 2 179613894 179613894 T C TTN Intron 0.05 TCGA-AA-3947-01 2 179614865 179614865 G T TTN Intron 0.37 TCGA-AA-3947-01 2 179622346 179622346 G T TTN Missense_Mutation p.A3534D 0.18 TCGA-AA-3947-01 2 179639874 179639874 T - TTN Frame_Shift_Del p.D2189Tfs*17 0.17 TCGA-AA-3947-01 2 180838480 180838480 A C CWC22 Missense_Mutation p.F211V 0.39 deleterious(0) probably_damaging(0.978) TCGA-AA-3947-01 2 182786689 182786689 G A SSFA2 Missense_Mutation p.M1075I 0.08 tolerated(0.67) benign(0.007) TCGA-AA-3947-01 2 183621176 183621176 G T DNAJC10 Nonsense_Mutation p.E597* 0.07 TCGA-AA-3947-01 2 18736570 18736570 C A RDH14 Nonsense_Mutation p.G300* 0.10 TCGA-AA-3947-01 2 18757503 18757503 G A NT5C1B Missense_Mutation p.L486F 0.05 deleterious(0.01) benign(0.202) TCGA-AA-3947-01 2 189458720 189458720 G A GULP1 Silent p.P299P 0.38 TCGA-AA-3947-01 2 189866308 189866308 G A COL3A1 Missense_Mutation p.G795D 0.41 unknown(0) TCGA-AA-3947-01 2 189869080 189869080 A G COL3A1 Missense_Mutation p.Q974R 0.49 probably_damaging(0.982) TCGA-AA-3947-01 2 189873894 189873894 A C COL3A1 Missense_Mutation p.N1257T 0.06 unknown(0) TCGA-AA-3947-01 2 190531834 190531834 T - ASNSD1 Frame_Shift_Del p.S327Lfs*19 0.25 TCGA-AA-3947-01 2 191301845 191301845 G A MFSD6 Missense_Mutation p.E364K 0.18 tolerated(0.11) benign(0.074) TCGA-AA-3947-01 2 192234334 192234334 C T MYO1B Nonsense_Mutation p.R367* 0.36 TCGA-AA-3947-01 2 192257904 192257904 A - MYO1B Frame_Shift_Del p.S730Afs*4 0.28 TCGA-AA-3947-01 2 197878289 197878289 C T HNRNPA3P15 5'Flank 0.11 TCGA-AA-3947-01 2 198948486 198948486 C A PLCL1 Missense_Mutation p.P82H 0.11 deleterious(0.04) possibly_damaging(0.848) TCGA-AA-3947-01 2 200298197 200298197 G A SATB2 Silent p.D70D 0.10 TCGA-AA-3947-01 2 201507487 201507487 C T AOX1 Missense_Mutation p.T937M 0.42 deleterious(0.04) benign(0.076) TCGA-AA-3947-01 2 201724903 201724903 C A CLK1 Missense_Mutation p.E184D 0.31 tolerated(0.05) benign(0.043) TCGA-AA-3947-01 2 202151253 202151254 - G CASP8 Frame_Shift_Ins p.K520Efs*19 0.25 TCGA-AA-3947-01 2 202619229 202619229 G T ALS2 Missense_Mutation p.P546H 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3947-01 2 203242274 203242274 G A BMPR2 Splice_Site p.X26_splice 0.33 TCGA-AA-3947-01 2 203620336 203620336 G A FAM117B Missense_Mutation p.V346M 0.37 tolerated(0.15) probably_damaging(0.976) TCGA-AA-3947-01 2 203972602 203972603 - G NBEAL1 Frame_Shift_Ins p.S520Efs*20 0.25 TCGA-AA-3947-01 2 204053285 204053285 A G NBEAL1 Missense_Mutation p.N2237D 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 2 206921296 206921296 G - INO80D Frame_Shift_Del p.P197Lfs*23 0.27 TCGA-AA-3947-01 2 207176058 207176058 T - ZDBF2 Frame_Shift_Del p.L2270* 0.29 TCGA-AA-3947-01 2 207431995 207431995 A T ADAM23 Missense_Mutation p.R481S 0.41 tolerated(0.45) benign(0.446) TCGA-AA-3947-01 2 209108305 209108305 T A IDH1 Missense_Mutation p.M182L 0.39 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-AA-3947-01 2 210685215 210685215 G A UNC80 Missense_Mutation p.A715T 0.10 benign(0) TCGA-AA-3947-01 2 210690749 210690749 G A UNC80 Missense_Mutation p.R817H 0.17 probably_damaging(0.993) TCGA-AA-3947-01 2 211441123 211441123 C A CPS1 Missense_Mutation p.A103D 0.34 deleterious(0) benign(0.23) TCGA-AA-3947-01 2 212570072 212570072 T A ERBB4 Missense_Mutation p.N390I 0.36 tolerated(0.07) probably_damaging(0.926) TCGA-AA-3947-01 2 215674340 215674340 A C BARD1 5'UTR 0.60 TCGA-AA-3947-01 2 216240361 216240361 C T FN1 Missense_Mutation p.A1990T 0.05 tolerated(0.11) probably_damaging(0.996) TCGA-AA-3947-01 2 217142429 217142429 G A MARCH4 Silent p.Y277Y 0.41 TCGA-AA-3947-01 2 219103550 219103550 C T ARPC2 Silent p.I144I 0.07 TCGA-AA-3947-01 2 219919720 219919720 G A IHH 3'UTR 0.27 TCGA-AA-3947-01 2 220107982 220107982 C A GLB1L Missense_Mutation p.G43W 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 2 220466108 220466108 T C STK11IP Silent p.V82V 0.08 TCGA-AA-3947-01 2 220502498 220502498 C T SLC4A3 Missense_Mutation p.R938C 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 2 223423340 223423340 C A SGPP2 Missense_Mutation p.P308H 0.19 deleterious(0.02) benign(0.366) TCGA-AA-3947-01 2 223505628 223505628 G A FARSB Missense_Mutation p.R98W 0.37 tolerated(0.07) benign(0.273) TCGA-AA-3947-01 2 223520749 223520749 A G FARSB Missense_Mutation p.L15P 0.38 deleterious(0) probably_damaging(0.958) TCGA-AA-3947-01 2 227662972 227662972 T G IRS1 Missense_Mutation p.K161N 0.34 deleterious(0) probably_damaging(0.972) TCGA-AA-3947-01 2 227979359 227979359 G T COL4A4 Silent p.A181A 0.35 TCGA-AA-3947-01 2 228493198 228493198 G A C2orf83 Silent p.S49S 0.40 TCGA-AA-3947-01 2 228552263 228552263 T A SLC19A3 Silent p.A447A 0.45 TCGA-AA-3947-01 2 230875594 230875594 A G FBXO36 Silent p.Q187Q 0.09 TCGA-AA-3947-01 2 230910604 230910604 G A SLC16A14 Missense_Mutation p.A413V 0.10 deleterious(0.04) probably_damaging(1) TCGA-AA-3947-01 2 231157409 231157409 C A SP140 Missense_Mutation p.P625H 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 2 231988485 231988485 T - HTR2B 5'UTR 0.30 TCGA-AA-3947-01 2 232262452 232262452 G A B3GNT7 Missense_Mutation p.V8I 0.29 tolerated(0.9) benign(0.001) TCGA-AA-3947-01 2 233350716 233350716 C T ECEL1 Silent p.A216A 0.10 TCGA-AA-3947-01 2 233415140 233415140 T - EIF4E2 5'UTR 0.11 TCGA-AA-3947-01 2 233546312 233546312 G A EFHD1 Silent p.S201S 0.06 TCGA-AA-3947-01 2 233697779 233697779 G A GIGYF2 Silent p.Q935Q 0.36 TCGA-AA-3947-01 2 234072469 234072469 G A INPP5D Missense_Mutation p.E441K 0.24 deleterious(0) possibly_damaging(0.808) TCGA-AA-3947-01 2 234590941 234590941 T - UGT1A7 Frame_Shift_Del p.S122Qfs*12 0.08 TCGA-AA-3947-01 2 234669123 234669123 G A UGT1A8 Intron 0.11 TCGA-AA-3947-01 2 234775640 234775640 C T MSL3P1 RNA 0.22 TCGA-AA-3947-01 2 237146585 237146585 C A ASB18 Nonsense_Mutation p.E115* 0.45 TCGA-AA-3947-01 2 238253822 238253822 A G COL6A3 Splice_Site p.X2375_splice 0.12 TCGA-AA-3947-01 2 238483125 238483125 C - RAB17 3'UTR 0.26 TCGA-AA-3947-01 2 239051488 239051488 G T KLHL30 Missense_Mutation p.G275C 0.49 deleterious(0) probably_damaging(0.977) TCGA-AA-3947-01 2 239079587 239079587 G A ILKAP Silent p.L345L 0.38 TCGA-AA-3947-01 2 239147595 239147595 G A HES6 Missense_Mutation p.S183F 0.40 deleterious(0) possibly_damaging(0.873) TCGA-AA-3947-01 2 241517061 241517061 G A RNPEPL1 Missense_Mutation p.G413S 0.35 tolerated(0.1) probably_damaging(1) TCGA-AA-3947-01 2 241658574 241658574 G A KIF1A Missense_Mutation p.P1688L 0.46 deleterious(0.02) probably_damaging(1) TCGA-AA-3947-01 2 241903114 241903114 C T AC104809.3 Missense_Mutation p.R971C 0.12 deleterious(0) probably_damaging(0.977) TCGA-AA-3947-01 2 24199878 24199878 G A UBXN2A Missense_Mutation p.V74I 0.36 tolerated(0.09) possibly_damaging(0.683) TCGA-AA-3947-01 2 242004914 242004914 G A SNED1 Silent p.A971A 0.42 TCGA-AA-3947-01 2 242066519 242066519 C - PASK Frame_Shift_Del p.G604Afs*4 0.30 TCGA-AA-3947-01 2 242122291 242122291 C T PPP1R7 3'UTR 0.62 TCGA-AA-3947-01 2 242202314 242202314 T C HDLBP Missense_Mutation p.K88E 0.24 deleterious(0.01) benign(0.434) TCGA-AA-3947-01 2 242611693 242611693 G - ATG4B 3'UTR 0.14 TCGA-AA-3947-01 2 24484598 24484599 - T ITSN2 Frame_Shift_Ins p.T790Nfs*11 0.29 TCGA-AA-3947-01 2 24951187 24951187 A G NCOA1 Missense_Mutation p.S910G 0.36 tolerated(0.34) benign(0.055) TCGA-AA-3947-01 2 27278864 27278864 A C AGBL5 Missense_Mutation p.Q408P 0.21 tolerated(0.27) benign(0.002) TCGA-AA-3947-01 2 27305714 27305714 G T EMILIN1 Missense_Mutation p.E425D 0.30 benign(0.093) TCGA-AA-3947-01 2 27327322 27327322 C T CGREF1 Intron 0.21 TCGA-AA-3947-01 2 27372208 27372208 C T TCF23 Silent p.G69G 0.09 TCGA-AA-3947-01 2 27449420 27449421 CT - CAD Frame_Shift_Del p.R689Qfs*7 0.32 TCGA-AA-3947-01 2 27683894 27683894 C T IFT172 Missense_Mutation p.A837T 0.24 deleterious(0.03) benign(0.134) TCGA-AA-3947-01 2 27800207 27800207 G A C2orf16 Silent p.L256L 0.09 TCGA-AA-3947-01 2 27804950 27804950 C T C2orf16 Silent p.S1837S 0.09 TCGA-AA-3947-01 2 28634985 28634985 C T FOSL2 Silent p.G217G 0.13 TCGA-AA-3947-01 2 29063227 29063227 T C SPDYA Silent p.L248L 0.09 TCGA-AA-3947-01 2 29287719 29287719 C - C2orf71 3'UTR 0.10 TCGA-AA-3947-01 2 29296390 29296390 T G C2orf71 Missense_Mutation p.E246D 0.09 tolerated(0.17) possibly_damaging(0.664) TCGA-AA-3947-01 2 29462663 29462663 G A ALK Silent p.G746G 0.35 TCGA-AA-3947-01 2 30142964 30142964 G A ALK Missense_Mutation p.R188C 0.18 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-3947-01 2 30480348 30480348 G A LBH Missense_Mutation p.R60H 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 2 31215864 31215864 C T GALNT14 Intron 0.34 TCGA-AA-3947-01 2 32352080 32352080 A G SPAST Missense_Mutation p.K388E 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 2 32750663 32750663 C A BIRC6 Missense_Mutation p.P3963Q 0.32 probably_damaging(0.998) TCGA-AA-3947-01 2 32800304 32800304 T C BIRC6 Missense_Mutation p.V4409A 0.35 probably_damaging(0.98) TCGA-AA-3947-01 2 33246030 33246030 G C LTBP1 Missense_Mutation p.C207S 0.28 deleterious(0) probably_damaging(0.982) TCGA-AA-3947-01 2 3381572 3381572 A G TSSC1 5'UTR 0.38 TCGA-AA-3947-01 2 37334414 37334414 C T EIF2AK2 3'UTR 0.13 TCGA-AA-3947-01 2 37455936 37455936 T C CEBPZ Missense_Mutation p.T134A 0.09 tolerated(0.47) benign(0.001) TCGA-AA-3947-01 2 37599991 37599991 T C QPCT 3'UTR 0.10 TCGA-AA-3947-01 2 39250359 39250359 C T SOS1 Missense_Mutation p.A404T 0.32 tolerated(0.29) benign(0.003) TCGA-AA-3947-01 2 39347478 39347478 T - SOS1 Frame_Shift_Del p.K29Rfs*23 0.23 TCGA-AA-3947-01 2 39406242 39406242 T C CDKL4 3'UTR 0.06 TCGA-AA-3947-01 2 39526917 39526917 C T MAP4K3 Missense_Mutation p.G382E 0.37 tolerated(0.36) possibly_damaging(0.476) TCGA-AA-3947-01 2 39570590 39570590 T A MAP4K3 Silent p.R83R 0.41 TCGA-AA-3947-01 2 39893198 39893198 C T TMEM178A Silent p.T28T 0.28 TCGA-AA-3947-01 2 42991088 42991089 - C OXER1 Frame_Shift_Ins p.S78Vfs*61 0.32 TCGA-AA-3947-01 2 43452512 43452512 C - ZFP36L2 Frame_Shift_Del p.G144Afs*43 0.08 TCGA-AA-3947-01 2 43452622 43452622 G C ZFP36L2 Silent p.G107G 0.30 TCGA-AA-3947-01 2 44201298 44201298 A G LRPPRC Silent p.T382T 0.18 TCGA-AA-3947-01 2 48809431 48809431 G C STON1-GTF2A1L Silent p.A553A 0.36 TCGA-AA-3947-01 2 54080952 54080952 G A GPR75 Silent p.A314A 0.37 TCGA-AA-3947-01 2 55126843 55126843 G A EML6 Silent p.V1016V 0.24 TCGA-AA-3947-01 2 56419936 56419936 G A CCDC85A Missense_Mutation p.A201T 0.11 tolerated(0.27) benign(0.015) TCGA-AA-3947-01 2 5840453 5840453 A - SOX11 3'UTR 0.28 TCGA-AA-3947-01 2 61493208 61493208 G A USP34 Missense_Mutation p.A1843V 0.38 deleterious(0) benign(0.2) TCGA-AA-3947-01 2 61709556 61709556 A G XPO1 Silent p.Y977Y 0.14 TCGA-AA-3947-01 2 61712998 61712998 C T XPO1 Missense_Mutation p.A805T 0.06 tolerated(0.48) benign(0.368) TCGA-AA-3947-01 2 63272143 63272143 G - EHBP1 Intron 0.27 TCGA-AA-3947-01 2 63660967 63660967 T C WDPCP Missense_Mutation p.N246S 0.19 tolerated(1) benign(0.003) TCGA-AA-3947-01 2 65495711 65495711 G A ACTR2 Missense_Mutation p.R348H 0.12 deleterious(0.02) benign(0.263) TCGA-AA-3947-01 2 65572014 65572014 G A SPRED2 Missense_Mutation p.R15C 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 2 69049547 69049547 C T ARHGAP25 Missense_Mutation p.P426S 0.37 tolerated(0.4) benign(0.002) TCGA-AA-3947-01 2 71909755 71909755 T C DYSF Missense_Mutation p.I2090T 0.09 deleterious(0) benign(0.339) TCGA-AA-3947-01 2 74592215 74592215 A G DCTN1 Silent p.S1061S 0.33 TCGA-AA-3947-01 2 74757473 74757473 G - HTRA2 Frame_Shift_Del p.A116Qfs*93 0.21 TCGA-AA-3947-01 2 75108866 75108866 T G HK2 Silent p.L533L 0.16 TCGA-AA-3947-01 2 75891900 75891900 G A GCFC2 Silent p.V746V 0.36 TCGA-AA-3947-01 2 84864435 84864435 A G DNAH6 Silent p.P1585P 0.42 TCGA-AA-3947-01 2 84908601 84908601 G A DNAH6 Missense_Mutation p.A2289T 0.09 tolerated(0.09) possibly_damaging(0.642) TCGA-AA-3947-01 2 85570481 85570481 G A RETSAT Silent p.L573L 0.07 TCGA-AA-3947-01 2 86258515 86258515 G A POLR1A Missense_Mutation p.R1506C 0.09 tolerated(0.19) benign(0.009) TCGA-AA-3947-01 2 86269012 86269012 C A POLR1A Missense_Mutation p.R1191M 0.07 deleterious(0.04) possibly_damaging(0.792) TCGA-AA-3947-01 2 86437837 86437837 T G MRPL35 3'UTR 0.35 TCGA-AA-3947-01 2 86831408 86831408 G A RNF103 Missense_Mutation p.S539L 0.40 tolerated(0.62) benign(0.173) TCGA-AA-3947-01 2 87213813 87213813 C T RGPD1 Missense_Mutation p.P1256L 0.20 deleterious(0) possibly_damaging(0.835) TCGA-AA-3947-01 2 89103957 89103957 G A ANKRD36BP2 RNA 0.09 TCGA-AA-3947-01 2 90260056 90260056 T G IGKV1D-8 Missense_Mutation p.S53R 0.09 tolerated(0.05) benign(0.02) TCGA-AA-3947-01 2 95522779 95522779 C T ANKRD20A8P RNA 0.08 TCGA-AA-3947-01 2 95940475 95940475 C A PROM2 Silent p.R48R 0.10 TCGA-AA-3947-01 2 95943724 95943724 A C PROM2 Missense_Mutation p.E341A 0.43 deleterious(0.01) possibly_damaging(0.559) TCGA-AA-3947-01 2 96553678 96553678 C T ANKRD36C Missense_Mutation p.G46E 0.27 deleterious_low_confidence(0) possibly_damaging(0.755) TCGA-AA-3947-01 2 97261282 97261282 C A KANSL3 3'UTR 0.35 TCGA-AA-3947-01 2 97520143 97520143 G A ANKRD39 Nonsense_Mutation p.R46* 0.08 TCGA-AA-3947-01 2 97559687 97559687 C A FAM178B Missense_Mutation p.K584N 0.21 tolerated(0.16) possibly_damaging(0.742) TCGA-AA-3947-01 2 97877456 97877456 G T ANKRD36 Missense_Mutation p.K1149N 0.27 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 2 98373724 98373724 G A TMEM131 Silent p.G1830G 0.22 TCGA-AA-3947-01 2 99006148 99006148 C T CNGA3 Silent p.I159I 0.38 TCGA-AA-3947-01 2 99294774 99294774 C T MGAT4A Silent p.K85K 0.31 TCGA-AA-3947-01 2 99448968 99448969 - T KIAA1211L Frame_Shift_Ins p.I128Nfs*4 0.26 TCGA-AA-3947-01 2 99636944 99636944 C A TSGA10 Missense_Mutation p.R539M 0.35 tolerated(0.75) benign(0.001) TCGA-AA-3947-01 3 101060567 101060567 G A SENP7 Silent p.S721S 0.35 TCGA-AA-3947-01 3 10135979 10135979 C T FANCD2 Missense_Mutation p.R1299C 0.32 deleterious(0) probably_damaging(0.994) TCGA-AA-3947-01 3 10146398 10146398 G A FANCD2OS Missense_Mutation p.R21W 0.45 deleterious(0) possibly_damaging(0.616) TCGA-AA-3947-01 3 101572405 101572405 T C NFKBIZ Silent p.G345G 0.33 TCGA-AA-3947-01 3 10264473 10264473 G - IRAK2 Frame_Shift_Del p.Q391Sfs*2 0.26 TCGA-AA-3947-01 3 10419991 10419993 CTC - ATP2B2 In_Frame_Del p.E382del 0.42 TCGA-AA-3947-01 3 107789971 107789971 T C CD47 Missense_Mutation p.I153M 0.42 deleterious(0) possibly_damaging(0.643) TCGA-AA-3947-01 3 108072520 108072520 C T HHLA2 Missense_Mutation p.A104V 0.35 deleterious(0) probably_damaging(0.941) TCGA-AA-3947-01 3 11076361 11076361 A G SLC6A1 Missense_Mutation p.T558A 0.11 tolerated(0.59) benign(0.098) TCGA-AA-3947-01 3 113374121 113374121 T C KIAA2018 Silent p.S2136S 0.18 TCGA-AA-3947-01 3 113724537 113724537 C A KIAA1407 Silent p.L562L 0.07 TCGA-AA-3947-01 3 113955271 113955271 G A ZNF80 Silent p.Y217Y 0.31 TCGA-AA-3947-01 3 114070331 114070331 G A ZBTB20 Silent p.G198G 0.34 TCGA-AA-3947-01 3 119885960 119885960 C T GPR156 Silent p.G788G 0.08 TCGA-AA-3947-01 3 120673816 120673816 C T STXBP5L Silent p.P73P 0.35 TCGA-AA-3947-01 3 121258312 121258312 C T POLQ Missense_Mutation p.R200H 0.07 deleterious(0.02) possibly_damaging(0.88) TCGA-AA-3947-01 3 121410714 121410714 T - GOLGB1 Frame_Shift_Del p.D2500Tfs*21 0.17 TCGA-AA-3947-01 3 121712685 121712685 G - ILDR1 Frame_Shift_Del p.P304Lfs*32 0.21 TCGA-AA-3947-01 3 122133833 122133833 C T WDR5B Silent p.L181L 0.20 TCGA-AA-3947-01 3 122255894 122255894 T - PARP9 Frame_Shift_Del p.T633Pfs*5 0.15 TCGA-AA-3947-01 3 122632794 122632794 G A SEMA5B Silent p.G735G 0.40 TCGA-AA-3947-01 3 123357034 123357034 C T MYLK Silent p.A1615A 0.36 TCGA-AA-3947-01 3 123457860 123457860 C - MYLK Frame_Shift_Del p.E158Sfs*79 0.18 TCGA-AA-3947-01 3 123988048 123988048 G A KALRN Silent p.K303K 0.13 TCGA-AA-3947-01 3 124165005 124165005 C T KALRN Intron 0.28 TCGA-AA-3947-01 3 12434182 12434182 A - PPARG Frame_Shift_Del p.S186Vfs*47 0.08 TCGA-AA-3947-01 3 124431944 124431944 C A KALRN Silent p.T1049T 0.08 TCGA-AA-3947-01 3 126135205 126135205 A G CCDC37 Missense_Mutation p.Y91C 0.45 tolerated(0.06) benign(0.009) TCGA-AA-3947-01 3 126423216 126423216 C T CHCHD6 Missense_Mutation p.R21W 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 3 126736733 126736733 A G PLXNA1 Missense_Mutation p.T1220A 0.10 tolerated(0.22) possibly_damaging(0.895) TCGA-AA-3947-01 3 126747938 126747938 A C PLXNA1 Missense_Mutation p.Q1591P 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 3 126749233 126749233 C T PLXNA1 Missense_Mutation p.R1737C 0.07 deleterious(0.04) probably_damaging(0.91) TCGA-AA-3947-01 3 127774381 127774381 T C SEC61A1 Missense_Mutation p.L33P 0.41 deleterious(0) possibly_damaging(0.745) TCGA-AA-3947-01 3 128182063 128182063 C T DNAJB8 Missense_Mutation p.G9D 0.09 deleterious(0.01) probably_damaging(1) TCGA-AA-3947-01 3 128813934 128813934 T C RAB43 Missense_Mutation p.I95V 0.08 tolerated(0.07) possibly_damaging(0.656) TCGA-AA-3947-01 3 129140308 129140308 G A EFCAB12 Missense_Mutation p.P130S 0.10 tolerated(0.23) benign(0.055) TCGA-AA-3947-01 3 129151341 129151341 C A MBD4 Intron 0.09 TCGA-AA-3947-01 3 129237951 129237951 C T IFT122 Silent p.S1182S 0.38 TCGA-AA-3947-01 3 129276034 129276034 C T PLXND1 Silent p.K1826K 0.06 TCGA-AA-3947-01 3 129291743 129291743 C T PLXND1 Missense_Mutation p.G960D 0.53 tolerated(1) benign(0.001) TCGA-AA-3947-01 3 130285811 130285811 C T COL6A6 Silent p.G516G 0.49 TCGA-AA-3947-01 3 130307932 130307932 A T COL6A6 Splice_Site p.X1376_splice 0.08 TCGA-AA-3947-01 3 130452783 130452783 A G PIK3R4 Silent p.I353I 0.08 TCGA-AA-3947-01 3 133342934 133342934 T - TOPBP1 Frame_Shift_Del p.R964Efs*12 0.14 TCGA-AA-3947-01 3 133379900 133379900 A - TOPBP1 Frame_Shift_Del p.F24Lfs*7 0.08 TCGA-AA-3947-01 3 133485178 133485178 C A TF Missense_Mutation p.L463M 0.14 deleterious(0.01) possibly_damaging(0.898) TCGA-AA-3947-01 3 133538556 133538556 C T SRPRB Silent p.D254D 0.14 TCGA-AA-3947-01 3 133614357 133614357 G T RAB6B 5'UTR 0.22 TCGA-AA-3947-01 3 133664061 133664061 C - SLCO2A1 Frame_Shift_Del p.D447Tfs*33 0.28 TCGA-AA-3947-01 3 134085200 134085200 C T AMOTL2 Missense_Mutation p.A371T 0.07 tolerated(0.26) benign(0.015) TCGA-AA-3947-01 3 134268999 134268999 A T CEP63 Missense_Mutation p.Q426L 0.35 deleterious(0.04) probably_damaging(0.991) TCGA-AA-3947-01 3 135871408 135871408 T - MSL2 Frame_Shift_Del p.K105Nfs*6 0.26 TCGA-AA-3947-01 3 136219091 136219091 A - STAG1 Frame_Shift_Del p.F292Lfs*28 0.27 TCGA-AA-3947-01 3 136646930 136646930 A G NCK1 Silent p.L29L 0.08 TCGA-AA-3947-01 3 137942528 137942528 C T ARMC8 Missense_Mutation p.R116C 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-AA-3947-01 3 138025300 138025300 G T NME9 Silent p.T100T 0.15 TCGA-AA-3947-01 3 138478104 138478104 C T PIK3CB Missense_Mutation p.G28S 0.37 tolerated(0.81) benign(0.005) TCGA-AA-3947-01 3 138738844 138738844 G A PRR23B Silent p.R220R 0.08 TCGA-AA-3947-01 3 138738845 138738845 C T PRR23B Missense_Mutation p.R220H 0.07 tolerated(1) benign(0.001) TCGA-AA-3947-01 3 138739209 138739209 G C PRR23B Missense_Mutation p.L99V 0.09 tolerated(0.09) benign(0.068) TCGA-AA-3947-01 3 140178604 140178605 - A CLSTN2 Frame_Shift_Ins p.T407Nfs*29 0.23 TCGA-AA-3947-01 3 140998292 140998292 A G ACPL2 Missense_Mutation p.Y104C 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 3 141161266 141161266 C T ZBTB38 Silent p.D12D 0.42 TCGA-AA-3947-01 3 141162995 141162995 G A ZBTB38 Missense_Mutation p.A589T 0.13 tolerated(0.59) benign(0.002) TCGA-AA-3947-01 3 141290263 141290263 G A RASA2 Missense_Mutation p.A346T 0.05 tolerated(0.07) possibly_damaging(0.494) TCGA-AA-3947-01 3 1444145 1444145 G T CNTN6 Missense_Mutation p.E987D 0.38 tolerated(0.13) benign(0.096) TCGA-AA-3947-01 3 145842007 145842007 A G PLOD2 Missense_Mutation p.L40S 0.20 deleterious(0) probably_damaging(0.972) TCGA-AA-3947-01 3 147131487 147131487 C T ZIC1 3'UTR 0.50 TCGA-AA-3947-01 3 149095315 149095315 G A TM4SF1 Missense_Mutation p.A7V 0.41 deleterious(0) possibly_damaging(0.886) TCGA-AA-3947-01 3 150127430 150127430 C T TSC22D2 Missense_Mutation p.A98V 0.60 tolerated(0.08) benign(0.004) TCGA-AA-3947-01 3 150377751 150377751 G A FAM194A Silent p.A640A 0.05 TCGA-AA-3947-01 3 150874097 150874097 C T MED12L Silent p.L236L 0.12 TCGA-AA-3947-01 3 15123978 15123978 C T ZFYVE20 Missense_Mutation p.D246N 0.15 deleterious(0.02) benign(0.344) TCGA-AA-3947-01 3 151475338 151475338 A G AADACL2 Missense_Mutation p.R388G 0.14 deleterious(0) possibly_damaging(0.641) TCGA-AA-3947-01 3 152553998 152553998 A G P2RY1 Missense_Mutation p.T143A 0.51 tolerated(0.05) benign(0.028) TCGA-AA-3947-01 3 153943789 153943791 AAG - ARHGEF26 In_Frame_Del p.K696del 0.29 TCGA-AA-3947-01 3 155481558 155481558 T - C3orf33 Frame_Shift_Del p.G169Efs*15 0.28 TCGA-AA-3947-01 3 155861197 155861197 G A KCNAB1 Intron 0.39 TCGA-AA-3947-01 3 157155402 157155402 G A PTX3 Silent p.T77T 0.21 TCGA-AA-3947-01 3 157160295 157160295 T C PTX3 Missense_Mutation p.F225L 0.40 tolerated(0.05) probably_damaging(0.914) TCGA-AA-3947-01 3 15762452 15762452 T C ANKRD28 Silent p.L292L 0.42 TCGA-AA-3947-01 3 16535234 16535234 G A RFTN1 Missense_Mutation p.A48V 0.46 tolerated(0.28) possibly_damaging(0.57) TCGA-AA-3947-01 3 167023674 167023674 T G ZBBX Missense_Mutation p.E494D 0.06 tolerated(0.12) benign(0.034) TCGA-AA-3947-01 3 168820016 168820016 T C MECOM Splice_Site p.X746_splice 0.51 TCGA-AA-3947-01 3 169381319 169381319 C T MECOM 5'Flank 0.44 TCGA-AA-3947-01 3 169998104 169998104 T A PRKCI Nonsense_Mutation p.Y265* 0.04 TCGA-AA-3947-01 3 170150441 170150441 T A CLDN11 Missense_Mutation p.V174D 0.07 deleterious(0) benign(0.386) TCGA-AA-3947-01 3 170185083 170185083 C T SLC7A14 Silent p.T692T 0.13 TCGA-AA-3947-01 3 17418097 17418097 G A TBC1D5 Silent p.H207H 0.36 TCGA-AA-3947-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.42 tolerated(0.11) possibly_damaging(0.529) TCGA-AA-3947-01 3 179292182 179292182 A C ACTL6A Missense_Mutation p.K135Q 0.13 tolerated(0.05) benign(0.279) TCGA-AA-3947-01 3 180372696 180372696 C T CCDC39 Missense_Mutation p.V262I 0.42 tolerated(0.63) benign(0.008) TCGA-AA-3947-01 3 183667851 183667853 AGA - ABCC5 In_Frame_Del p.F1002del 0.35 TCGA-AA-3947-01 3 183670941 183670941 A G ABCC5 Missense_Mutation p.M867T 0.07 tolerated(0.16) benign(0) TCGA-AA-3947-01 3 183908820 183908820 G T ABCF3 Missense_Mutation p.E475D 0.09 tolerated(0.28) benign(0.12) TCGA-AA-3947-01 3 183979022 183979022 C G CAMK2N2 Missense_Mutation p.D18H 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.815) TCGA-AA-3947-01 3 184037581 184037581 C T EIF4G1 Missense_Mutation p.R184C 0.41 deleterious(0) probably_damaging(0.988) TCGA-AA-3947-01 3 184102931 184102931 G T CHRD Missense_Mutation p.G575C 0.49 deleterious(0) probably_damaging(0.989) TCGA-AA-3947-01 3 185169094 185169094 C T MAP3K13 Nonsense_Mutation p.R397* 0.36 TCGA-AA-3947-01 3 185635287 185635288 - T TRA2B 3'UTR 0.27 TCGA-AA-3947-01 3 185797702 185797702 C A ETV5 Missense_Mutation p.G185V 0.06 tolerated(0.25) benign(0.079) TCGA-AA-3947-01 3 186358436 186358436 A G FETUB Missense_Mutation p.R63G 0.15 tolerated(0.07) benign(0.004) TCGA-AA-3947-01 3 186370151 186370151 T C FETUB Missense_Mutation p.S294P 0.33 tolerated(0.1) benign(0.013) TCGA-AA-3947-01 3 186572481 186572481 T C ADIPOQ Silent p.H241H 0.29 TCGA-AA-3947-01 3 186937822 186937822 G A MASP1 3'UTR 0.35 TCGA-AA-3947-01 3 186961346 186961346 T C MASP1 Missense_Mutation p.N385S 0.21 deleterious(0.02) benign(0.002) TCGA-AA-3947-01 3 186971086 186971086 T C MASP1 Silent p.K254K 0.24 TCGA-AA-3947-01 3 189507524 189507524 G - TP63 Intron 0.27 TCGA-AA-3947-01 3 194061745 194061745 C A CPN2 3'UTR 0.44 TCGA-AA-3947-01 3 194062734 194062734 G T CPN2 Missense_Mutation p.P233H 0.23 deleterious(0.02) benign(0.278) TCGA-AA-3947-01 3 194118782 194118782 T G GP5 Missense_Mutation p.Q77P 0.24 deleterious(0.02) probably_damaging(0.979) TCGA-AA-3947-01 3 194337941 194337941 C T TMEM44 Missense_Mutation p.A271T 0.46 deleterious(0) probably_damaging(0.916) TCGA-AA-3947-01 3 194353871 194353871 C A TMEM44 Missense_Mutation p.R25L 0.51 deleterious(0.01) benign(0.433) TCGA-AA-3947-01 3 194409029 194409029 T C FAM43A 3'UTR 0.44 TCGA-AA-3947-01 3 196051312 196051312 C A TM4SF19 Splice_Site p.X94_splice 0.09 TCGA-AA-3947-01 3 196742377 196742377 G - MFI2 Frame_Shift_Del p.Y365Tfs*54 0.35 TCGA-AA-3947-01 3 197799697 197799697 C T RNU6-821P 5'Flank 0.28 TCGA-AA-3947-01 3 21462861 21462861 C G ZNF385D Missense_Mutation p.A345P 0.41 tolerated(0.22) probably_damaging(0.981) TCGA-AA-3947-01 3 25686847 25686847 C T TOP2B Missense_Mutation p.E57K 0.29 deleterious(0) probably_damaging(0.92) TCGA-AA-3947-01 3 3085339 3085339 G T CNTN4 Missense_Mutation p.W921L 0.31 deleterious(0) benign(0) TCGA-AA-3947-01 3 3139615 3139615 G A IL5RA Silent p.N216N 0.40 TCGA-AA-3947-01 3 32200543 32200543 C T GPD1L Missense_Mutation p.T265I 0.32 deleterious(0) probably_damaging(0.957) TCGA-AA-3947-01 3 32932261 32932261 A G TRIM71 Missense_Mutation p.D522G 0.16 deleterious(0.01) probably_damaging(0.912) TCGA-AA-3947-01 3 32932476 32932476 C A TRIM71 Missense_Mutation p.L594M 0.11 tolerated(0.13) benign(0.108) TCGA-AA-3947-01 3 33552221 33552222 - A CLASP2 Frame_Shift_Ins p.L1390Ffs*6 0.10 TCGA-AA-3947-01 3 33644402 33644402 G C CLASP2 Intron 0.43 TCGA-AA-3947-01 3 38043304 38043304 C - VILL Frame_Shift_Del p.H480Tfs*11 0.30 TCGA-AA-3947-01 3 38103673 38103673 T C DLEC1 Silent p.P229P 0.09 TCGA-AA-3947-01 3 38126922 38126923 - C DLEC1 Frame_Shift_Ins p.V476Rfs*58 0.24 TCGA-AA-3947-01 3 38596007 38596007 T C SCN5A Missense_Mutation p.T1526A 0.32 deleterious(0) possibly_damaging(0.511) TCGA-AA-3947-01 3 38601827 38601827 G A SCN5A Silent p.G1352G 0.35 TCGA-AA-3947-01 3 39159612 39159612 C T TTC21A Missense_Mutation p.H257Y 0.42 tolerated(0.43) benign(0.026) TCGA-AA-3947-01 3 39307180 39307180 G A CX3CR1 Missense_Mutation p.A306V 0.07 deleterious(0.02) benign(0.394) TCGA-AA-3947-01 3 41657184 41657184 G A ULK4 Silent p.I1032I 0.06 TCGA-AA-3947-01 3 41746561 41746561 G A ULK4 Silent p.D923D 0.43 TCGA-AA-3947-01 3 41841720 41841720 A G ULK4 Silent p.A638A 0.09 TCGA-AA-3947-01 3 42264487 42264487 C T TRAK1 Missense_Mutation p.T707M 0.15 deleterious(0.01) benign(0.243) TCGA-AA-3947-01 3 42751284 42751284 G A CCDC13 Missense_Mutation p.P627L 0.43 tolerated(0.09) benign(0.015) TCGA-AA-3947-01 3 42845771 42845771 C T HIGD1A 5'UTR 0.11 TCGA-AA-3947-01 3 4358574 4358574 A G SETMAR Missense_Mutation p.N567D 0.10 tolerated_low_confidence(0.39) unknown(0) TCGA-AA-3947-01 3 44869760 44869760 A G KIF15 Missense_Mutation p.S971G 0.20 tolerated(0.17) benign(0.075) TCGA-AA-3947-01 3 45077364 45077364 A G CLEC3B Missense_Mutation p.D186G 0.16 deleterious(0.02) probably_damaging(1) TCGA-AA-3947-01 3 45127073 45127073 C T CDCP1 3'UTR 0.37 TCGA-AA-3947-01 3 45800535 45800535 G - SLC6A20 Frame_Shift_Del p.L572Wfs*49 0.27 TCGA-AA-3947-01 3 46417639 46417639 A - CCR5 3'UTR 0.24 TCGA-AA-3947-01 3 47043264 47043264 C T NBEAL2 Missense_Mutation p.A1577V 0.14 tolerated(0.06) benign(0.434) TCGA-AA-3947-01 3 47049661 47049662 TG - NBEAL2 Frame_Shift_Del p.S2570Wfs*3 0.27 TCGA-AA-3947-01 3 47162622 47162622 A G SETD2 Silent p.V1168V 0.40 TCGA-AA-3947-01 3 47453056 47453056 C - PTPN23 Frame_Shift_Del p.P1258Rfs*2 0.23 TCGA-AA-3947-01 3 47889722 47889722 G C DHX30 Missense_Mutation p.R780P 0.30 deleterious(0) probably_damaging(0.974) TCGA-AA-3947-01 3 48459897 48459897 C T PLXNB1 Missense_Mutation p.A1004T 0.12 tolerated(0.35) possibly_damaging(0.804) TCGA-AA-3947-01 3 48611297 48611298 - G COL7A1 Frame_Shift_Ins p.G2177Wfs*113 0.08 TCGA-AA-3947-01 3 48679431 48679431 C A CELSR3 Missense_Mutation p.D2893Y 0.36 deleterious(0) possibly_damaging(0.724) TCGA-AA-3947-01 3 48687925 48687925 G A CELSR3 Missense_Mutation p.R2154W 0.46 deleterious(0.01) probably_damaging(0.985) TCGA-AA-3947-01 3 48965066 48965066 A G ARIH2 Silent p.E25E 0.51 TCGA-AA-3947-01 3 49060517 49060517 T A NDUFAF3 Missense_Mutation p.L156Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 3 49114456 49114456 A C QRICH1 5'UTR 0.34 TCGA-AA-3947-01 3 49152539 49152539 C T USP19 Silent p.A676A 0.41 TCGA-AA-3947-01 3 49200644 49200644 G A CCDC71 Missense_Mutation p.A333V 0.18 tolerated_low_confidence(0.16) unknown(0) TCGA-AA-3947-01 3 49294518 49294518 C T CCDC36 Nonsense_Mutation p.Q530* 0.45 TCGA-AA-3947-01 3 49688334 49688334 G A BSN Missense_Mutation p.S603N 0.23 unknown(0) TCGA-AA-3947-01 3 49690033 49690033 G A BSN Missense_Mutation p.R1015H 0.47 unknown(0) TCGA-AA-3947-01 3 49832771 49832771 G A CDHR4 Missense_Mutation p.R297C 0.34 deleterious(0.03) benign(0.007) TCGA-AA-3947-01 3 49924977 49924977 T C MST1R Silent p.Q1322Q 0.23 TCGA-AA-3947-01 3 50311902 50311902 G - LSMEM2 5'Flank 0.27 TCGA-AA-3947-01 3 50325659 50325659 C T IFRD2 Missense_Mutation p.R495Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 3 50327601 50327601 C A IFRD2 Missense_Mutation p.G194W 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 3 50471803 50471803 C T CACNA2D2 Missense_Mutation p.V116M 0.05 tolerated(0.06) probably_damaging(0.999) TCGA-AA-3947-01 3 51743390 51743390 G A GRM2 Missense_Mutation p.D131N 0.07 tolerated(0.65) benign(0.06) TCGA-AA-3947-01 3 51812929 51812929 T C IQCF6 Missense_Mutation p.R12G 0.11 deleterious(0.04) benign(0.004) TCGA-AA-3947-01 3 52179976 52179976 A C POC1A Missense_Mutation p.F189V 0.12 tolerated(0.07) benign(0.199) TCGA-AA-3947-01 3 52383372 52383372 G A DNAH1 Missense_Mutation p.R821H 0.38 benign(0.002) TCGA-AA-3947-01 3 52475646 52475646 C T SEMA3G Missense_Mutation p.R204Q 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 3 52475665 52475665 G A SEMA3G Nonsense_Mutation p.R198* 0.30 TCGA-AA-3947-01 3 52535669 52535669 G - STAB1 Frame_Shift_Del p.G79Afs*6 0.20 TCGA-AA-3947-01 3 52558629 52558629 T C NT5DC2 Missense_Mutation p.S511G 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-AA-3947-01 3 52820380 52820380 G T ITIH1 Missense_Mutation p.G555C 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3947-01 3 52867731 52867731 C G TMEM110-MUSTN1 Missense_Mutation p.R305P 0.36 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-AA-3947-01 3 53910654 53910654 A C ACTR8 Silent p.G257G 0.19 TCGA-AA-3947-01 3 55504280 55504280 G A WNT5A Missense_Mutation p.T328M 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-AA-3947-01 3 55521083 55521083 C T WNT5A 5'UTR 0.44 TCGA-AA-3947-01 3 56695043 56695043 G T FAM208A Missense_Mutation p.P388H 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3947-01 3 56703768 56703768 G A FAM208A Missense_Mutation p.T232M 0.45 deleterious(0.01) benign(0.299) TCGA-AA-3947-01 3 57130381 57130381 G A IL17RD 3'UTR 0.07 TCGA-AA-3947-01 3 57458370 57458370 A - snoU13 5'Flank 0.26 TCGA-AA-3947-01 3 57898181 57898181 A C SLMAP Missense_Mutation p.R557S 0.18 deleterious_low_confidence(0) benign(0.341) TCGA-AA-3947-01 3 63976433 63976433 G A ATXN7 Missense_Mutation p.R527Q 0.35 deleterious(0.03) benign(0.318) TCGA-AA-3947-01 3 66293635 66293635 T - SLC25A26 Frame_Shift_Del p.F68Lfs*7 0.27 TCGA-AA-3947-01 3 73432806 73432806 G A PDZRN3 Missense_Mutation p.R971C 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 3 73433004 73433004 T A PDZRN3 Missense_Mutation p.M905L 0.07 tolerated(0.47) benign(0.005) TCGA-AA-3947-01 3 74347112 74347112 T G CNTN3 Missense_Mutation p.E799D 0.36 deleterious(0.04) benign(0.373) TCGA-AA-3947-01 3 7721740 7721740 A G GRM7 Missense_Mutation p.Y819C 0.32 deleterious(0) possibly_damaging(0.819) TCGA-AA-3947-01 3 78795908 78795908 T C ROBO1 Silent p.K214K 0.38 TCGA-AA-3947-01 3 78987879 78987879 C A ROBO1 Missense_Mutation p.S124I 0.37 deleterious(0) probably_damaging(0.993) TCGA-AA-3947-01 3 9419541 9419541 C A THUMPD3 Missense_Mutation p.P326Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 3 9483861 9483861 T C SETD5 Missense_Mutation p.C337R 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 3 97596644 97596644 A T CRYBG3 Missense_Mutation p.E254D 0.37 deleterious(0.02) benign(0.022) TCGA-AA-3947-01 3 9776020 9776020 C T BRPF1 Missense_Mutation p.R66C 0.21 deleterious(0) probably_damaging(0.989) TCGA-AA-3947-01 3 98072708 98072708 A G OR5K4 Missense_Mutation p.E4G 0.15 tolerated(0.14) benign(0.002) TCGA-AA-3947-01 3 98072757 98072757 T A OR5K4 Nonsense_Mutation p.Y20* 0.33 TCGA-AA-3947-01 3 98503842 98503842 A G ST3GAL6 Missense_Mutation p.K130R 0.39 deleterious(0.02) possibly_damaging(0.876) TCGA-AA-3947-01 3 99514468 99514468 C - COL8A1 Frame_Shift_Del p.P576Lfs*20 0.09 TCGA-AA-3947-01 3 9991197 9991197 G A PRRT3 Silent p.P201P 0.47 TCGA-AA-3947-01 4 10022953 10022953 A C SLC2A9 Missense_Mutation p.L34R 0.23 tolerated_low_confidence(0.67) benign(0) TCGA-AA-3947-01 4 100803086 100803086 A G LAMTOR3 3'UTR 0.17 TCGA-AA-3947-01 4 1018380 1018380 G T FGFRL1 Missense_Mutation p.G334C 0.46 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 4 104101627 104101627 C A CENPE Splice_Site p.X362_splice 0.16 TCGA-AA-3947-01 4 106159326 106159326 A T TET2 Intron 0.11 TCGA-AA-3947-01 4 106164734 106164734 G A TET2 Missense_Mutation p.R1201H 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 4 107847035 107847035 C A DKK2 Silent p.S98S 0.36 TCGA-AA-3947-01 4 110581505 110581505 A G CCDC109B Silent p.A110A 0.32 TCGA-AA-3947-01 4 113353404 113353404 C A ALPK1 Missense_Mutation p.L901I 0.30 tolerated(0.46) benign(0.081) TCGA-AA-3947-01 4 113436339 113436339 C T NEUROG2 Missense_Mutation p.R98Q 0.36 deleterious(0.03) probably_damaging(0.953) TCGA-AA-3947-01 4 1165696 1165696 G A SPON2 Missense_Mutation p.A55V 0.38 deleterious(0.01) benign(0.114) TCGA-AA-3947-01 4 119979249 119979249 G A SYNPO2 3'UTR 0.67 TCGA-AA-3947-01 4 122737744 122737744 A T CCNA2 3'UTR 0.19 TCGA-AA-3947-01 4 123234835 123234835 A G KIAA1109 Silent p.A3435A 0.09 TCGA-AA-3947-01 4 123283461 123283461 T - KIAA1109 3'UTR 0.31 TCGA-AA-3947-01 4 123838805 123838805 G T NUDT6 Missense_Mutation p.P98H 0.19 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 4 123850276 123850276 A C SPATA5 Silent p.R124R 0.28 TCGA-AA-3947-01 4 126238394 126238394 C T FAT4 Silent p.D276D 0.16 TCGA-AA-3947-01 4 126238447 126238447 C - FAT4 Frame_Shift_Del p.F296Sfs*45 0.31 TCGA-AA-3947-01 4 126239814 126239814 G A FAT4 Missense_Mutation p.A750T 0.09 benign(0.217) TCGA-AA-3947-01 4 126240183 126240183 G A FAT4 Missense_Mutation p.V873M 0.42 probably_damaging(0.925) TCGA-AA-3947-01 4 126240288 126240288 G A FAT4 Missense_Mutation p.A908T 0.13 benign(0.023) TCGA-AA-3947-01 4 126372024 126372024 A G FAT4 Missense_Mutation p.N3285D 0.35 benign(0.019) TCGA-AA-3947-01 4 1283694 1283694 G A MAEA 5'UTR 0.38 TCGA-AA-3947-01 4 129773353 129773353 G A JADE1 Missense_Mutation p.C209Y 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 4 138452072 138452072 G A PCDH18 Silent p.L391L 0.34 TCGA-AA-3947-01 4 140283014 140283014 G A NAA15 Missense_Mutation p.R559K 0.20 tolerated(0.72) benign(0.013) TCGA-AA-3947-01 4 140625381 140625381 A G MGST2 3'UTR 0.34 TCGA-AA-3947-01 4 141560521 141560521 A C TBC1D9 Missense_Mutation p.V800G 0.35 deleterious(0) possibly_damaging(0.664) TCGA-AA-3947-01 4 141560522 141560522 C A TBC1D9 Missense_Mutation p.V800L 0.34 deleterious(0.01) benign(0.009) TCGA-AA-3947-01 4 142053482 142053482 C T RNF150 Missense_Mutation p.A161T 0.25 tolerated(0.23) benign(0.021) TCGA-AA-3947-01 4 146017246 146017246 A C ANAPC10 Silent p.T2T 0.22 TCGA-AA-3947-01 4 146696959 146696959 T G ZNF827 Missense_Mutation p.K892T 0.46 tolerated(0.05) possibly_damaging(0.893) TCGA-AA-3947-01 4 151000255 151000255 G T DCLK2 Missense_Mutation p.G26W 0.47 deleterious(0) possibly_damaging(0.891) TCGA-AA-3947-01 4 151177332 151177332 C - DCLK2 Frame_Shift_Del p.H764Tfs*153 0.28 TCGA-AA-3947-01 4 154125671 154125671 C A TRIM2 5'UTR 0.39 TCGA-AA-3947-01 4 154523386 154523386 G A KIAA0922 Silent p.S783S 0.14 TCGA-AA-3947-01 4 154553974 154553974 G A KIAA0922 Missense_Mutation p.A1438T 0.06 tolerated(0.21) benign(0.021) TCGA-AA-3947-01 4 155411727 155411727 C T DCHS2 Missense_Mutation p.A261T 0.75 tolerated(0.59) benign(0.007) TCGA-AA-3947-01 4 155465613 155465613 G A PLRG1 Missense_Mutation p.P193L 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 4 156273789 156273790 - T MAP9 Frame_Shift_Ins p.D594Rfs*2 0.10 TCGA-AA-3947-01 4 156632102 156632102 C T GUCY1A3 Missense_Mutation p.T262I 0.40 tolerated(0.32) benign(0.009) TCGA-AA-3947-01 4 16189885 16189885 T G TAPT1 Missense_Mutation p.I236L 0.36 tolerated(0.57) benign(0.046) TCGA-AA-3947-01 4 162697122 162697122 C T FSTL5 Missense_Mutation p.D172N 0.31 tolerated(0.46) benign(0.033) TCGA-AA-3947-01 4 165880260 165880260 T C FAM218A 3'UTR 0.36 TCGA-AA-3947-01 4 166033912 166033912 C - TMEM192 Frame_Shift_Del p.G5Afs*46 0.29 TCGA-AA-3947-01 4 166794937 166794937 C A TLL1 5'UTR 0.35 TCGA-AA-3947-01 4 169279312 169279312 T G DDX60L Missense_Mutation p.N1703H 0.08 tolerated_low_confidence(0.43) benign(0.003) TCGA-AA-3947-01 4 170927033 170927033 T G MFAP3L 5'UTR 0.12 TCGA-AA-3947-01 4 174448452 174448452 G T HAND2 Silent p.V210V 0.13 TCGA-AA-3947-01 4 17590506 17590506 G A LAP3 Missense_Mutation p.E257K 0.22 deleterious(0) probably_damaging(0.99) TCGA-AA-3947-01 4 17635458 17635458 G T FAM184B Silent p.A981A 0.29 TCGA-AA-3947-01 4 176622885 176622885 C - GPM6A Frame_Shift_Del p.G24Afs*7 0.22 TCGA-AA-3947-01 4 177052879 177052879 T A WDR17 Missense_Mutation p.L387H 0.05 deleterious(0) probably_damaging(0.91) TCGA-AA-3947-01 4 17826619 17826619 C T NCAPG Missense_Mutation p.A471V 0.12 deleterious(0.01) benign(0.001) TCGA-AA-3947-01 4 17826620 17826620 G A NCAPG Silent p.A471A 0.17 TCGA-AA-3947-01 4 1803734 1803734 C A FGFR3 Silent p.P304P 0.38 TCGA-AA-3947-01 4 1808327 1808327 C - FGFR3 Frame_Shift_Del p.G699Afs*11 0.08 TCGA-AA-3947-01 4 183675700 183675700 G A TENM3 Missense_Mutation p.G1394R 0.44 deleterious(0.02) benign(0.035) TCGA-AA-3947-01 4 184618882 184618882 G A TRAPPC11 Silent p.T915T 0.33 TCGA-AA-3947-01 4 185012301 185012301 T - ENPP6 3'UTR 0.25 TCGA-AA-3947-01 4 185074884 185074884 G A ENPP6 Missense_Mutation p.R82C 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3947-01 4 186253779 186253779 G A SNX25 Missense_Mutation p.V430M 0.27 tolerated(0.22) benign(0.007) TCGA-AA-3947-01 4 186336962 186336962 C T UFSP2 Silent p.T131T 0.23 TCGA-AA-3947-01 4 186339649 186339649 T G UFSP2 Missense_Mutation p.E93D 0.09 tolerated(0.76) benign(0.012) TCGA-AA-3947-01 4 187630705 187630705 A G FAT1 Missense_Mutation p.F93L 0.11 probably_damaging(0.998) TCGA-AA-3947-01 4 187630712 187630712 G A FAT1 Silent p.L90L 0.18 TCGA-AA-3947-01 4 20611696 20611696 T C SLIT2 Silent p.S1251S 0.12 TCGA-AA-3947-01 4 2062839 2062839 C T NAT8L Missense_Mutation p.A164V 0.39 deleterious(0.05) possibly_damaging(0.587) TCGA-AA-3947-01 4 21305430 21305431 - T KCNIP4 Intron 0.10 TCGA-AA-3947-01 4 21699052 21699052 G A KCNIP4 Intron 0.17 TCGA-AA-3947-01 4 21950334 21950334 G A KCNIP4 5'UTR 0.16 TCGA-AA-3947-01 4 2343241 2343241 G A ZFYVE28 Silent p.H94H 0.19 TCGA-AA-3947-01 4 23815656 23815656 G C PPARGC1A Missense_Mutation p.L484V 0.42 tolerated(0.28) benign(0.343) TCGA-AA-3947-01 4 2515558 2515558 C - RNF4 3'UTR 0.23 TCGA-AA-3947-01 4 25760567 25760567 C T SEL1L3 Missense_Mutation p.E1027K 0.20 tolerated(0.5) possibly_damaging(0.522) TCGA-AA-3947-01 4 2632744 2632744 C A FAM193A Missense_Mutation p.L5M 0.09 deleterious(0) probably_damaging(0.994) TCGA-AA-3947-01 4 26483329 26483329 G A CCKAR Silent p.G406G 0.07 TCGA-AA-3947-01 4 2695373 2695373 G T FAM193A Missense_Mutation p.R664M 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3947-01 4 2940408 2940408 T - NOP14 3'UTR 0.31 TCGA-AA-3947-01 4 2943248 2943248 G A NOP14 Intron 0.29 TCGA-AA-3947-01 4 2952780 2952780 A - NOP14 Intron 0.21 TCGA-AA-3947-01 4 30724478 30724478 C T PCDH7 Silent p.G478G 0.31 TCGA-AA-3947-01 4 3133020 3133020 G A HTT Missense_Mutation p.R665H 0.19 benign(0.044) TCGA-AA-3947-01 4 3176516 3176516 G A HTT Missense_Mutation p.R1412H 0.17 probably_damaging(0.985) TCGA-AA-3947-01 4 3230642 3230642 C T HTT Missense_Mutation p.S2672L 0.38 benign(0.036) TCGA-AA-3947-01 4 3432363 3432363 G T RGS12 Missense_Mutation p.Q1265H 0.14 tolerated_low_confidence(0.13) benign(0.003) TCGA-AA-3947-01 4 3475167 3475167 G A DOK7 Silent p.S45S 0.39 TCGA-AA-3947-01 4 366976 366976 T A ZNF141 Silent p.T250T 0.35 TCGA-AA-3947-01 4 37447352 37447352 G A KIAA1239 Missense_Mutation p.A1248T 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 4 39276477 39276477 C T WDR19 Silent p.G1205G 0.36 TCGA-AA-3947-01 4 3949898 3949898 T C FAM86EP RNA 0.40 TCGA-AA-3947-01 4 41258982 41258982 C T UCHL1 5'UTR 0.41 TCGA-AA-3947-01 4 4322569 4322569 C T ZBTB49 Silent p.L608L 0.39 TCGA-AA-3947-01 4 435607 435607 A G ZNF721 Silent p.H883H 0.21 TCGA-AA-3947-01 4 44680574 44680574 A - GUF1 5'UTR 0.32 TCGA-AA-3947-01 4 46060335 46060335 T A GABRG1 Missense_Mutation p.Y272F 0.35 tolerated(0.17) benign(0.015) TCGA-AA-3947-01 4 47765575 47765575 C G CORIN Missense_Mutation p.Q146H 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3947-01 4 47939078 47939078 C T CNGA1 Missense_Mutation p.R547H 0.06 deleterious(0.01) probably_damaging(1) TCGA-AA-3947-01 4 527713 527713 C T PIGG Missense_Mutation p.A893V 0.37 tolerated(0.28) benign(0.008) TCGA-AA-3947-01 4 54325743 54325743 T - FIP1L1 3'UTR 0.26 TCGA-AA-3947-01 4 54876128 54876132 AAAAC - CHIC2 3'UTR 0.30 TCGA-AA-3947-01 4 55151638 55151638 T G PDGFRA Missense_Mutation p.F808L 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 4 55156543 55156543 G A PDGFRA Missense_Mutation p.V982M 0.36 tolerated(0.3) benign(0.021) TCGA-AA-3947-01 4 55593414 55593414 C A KIT Missense_Mutation p.P524H 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 4 5696133 5696133 A G EVC2 Silent p.L127L 0.06 TCGA-AA-3947-01 4 5696180 5696180 A G EVC2 Missense_Mutation p.I111T 0.07 tolerated(0.56) benign(0.001) TCGA-AA-3947-01 4 57181128 57181128 A T KIAA1211 Missense_Mutation p.D487V 0.17 tolerated(0.2) possibly_damaging(0.904) TCGA-AA-3947-01 4 57843644 57843644 G A NOA1 Silent p.C36C 0.47 TCGA-AA-3947-01 4 5795383 5795383 C T EVC Missense_Mutation p.R609W 0.43 tolerated(0.11) benign(0.004) TCGA-AA-3947-01 4 619693 619693 G T PDE6B Missense_Mutation p.S93I 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 4 62599071 62599071 A G LPHN3 Missense_Mutation p.N332D 0.46 tolerated(0.07) probably_damaging(0.987) TCGA-AA-3947-01 4 6304097 6304097 C T WFS1 Missense_Mutation p.R859W 0.14 deleterious(0) benign(0.087) TCGA-AA-3947-01 4 678571 678571 G - MFSD7 Frame_Shift_Del p.T221Pfs*38 0.26 TCGA-AA-3947-01 4 68527886 68527886 G A UBA6 Intron 0.09 TCGA-AA-3947-01 4 6860228 6860228 G A KIAA0232 Silent p.V171V 0.39 TCGA-AA-3947-01 4 70155405 70155405 A T UGT2B28 Missense_Mutation p.N342I 0.06 deleterious(0.01) possibly_damaging(0.506) TCGA-AA-3947-01 4 70710027 70710027 A G SULT1E1 Silent p.H208H 0.09 TCGA-AA-3947-01 4 70823400 70823400 C A CSN2 Silent p.V89V 0.39 TCGA-AA-3947-01 4 70921264 70921264 C A HTN1 Nonsense_Mutation p.S51* 0.34 TCGA-AA-3947-01 4 71396916 71396916 C T AMTN Missense_Mutation p.P173L 0.11 tolerated(0.06) benign(0.01) TCGA-AA-3947-01 4 71654558 71654558 G T RUFY3 Missense_Mutation p.M369I 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-AA-3947-01 4 73161388 73161388 T G ADAMTS3 Missense_Mutation p.Q902H 0.19 tolerated(0.29) benign(0.036) TCGA-AA-3947-01 4 74367502 74367502 A G AFM Splice_Site p.X549_splice 0.31 TCGA-AA-3947-01 4 76861241 76861241 A G NAAA Missense_Mutation p.F95S 0.48 deleterious(0) possibly_damaging(0.638) TCGA-AA-3947-01 4 76912029 76912030 - A SDAD1 5'UTR 0.36 TCGA-AA-3947-01 4 77817430 77817430 G A SOWAHB Missense_Mutation p.R525C 0.22 deleterious(0.03) possibly_damaging(0.689) TCGA-AA-3947-01 4 78652580 78652580 C T CNOT6L Missense_Mutation p.A329T 0.10 tolerated(0.11) benign(0.117) TCGA-AA-3947-01 4 81967426 81967426 A T BMP3 Missense_Mutation p.E284V 0.35 tolerated(0.08) benign(0.221) TCGA-AA-3947-01 4 8229694 8229694 C A SH3TC1 Missense_Mutation p.P758H 0.35 tolerated(0.51) benign(0.004) TCGA-AA-3947-01 4 83838382 83838382 T - THAP9 Frame_Shift_Del p.F341Lfs*2 0.23 TCGA-AA-3947-01 4 83956441 83956441 C A COPS4 Missense_Mutation p.L22M 0.36 tolerated(0.18) benign(0.438) TCGA-AA-3947-01 4 845660 845660 G T GAK Missense_Mutation p.A1129D 0.08 tolerated(0.46) benign(0.028) TCGA-AA-3947-01 4 853435 853435 T C GAK Missense_Mutation p.D1081G 0.32 deleterious(0) probably_damaging(0.945) TCGA-AA-3947-01 4 85416883 85416883 G A NKX6-1 Missense_Mutation p.A262V 0.10 deleterious(0) unknown(0) TCGA-AA-3947-01 4 85419365 85419366 - C NKX6-1 Frame_Shift_Ins p.A6Gfs*159 0.50 TCGA-AA-3947-01 4 85654658 85654658 G A WDFY3 Silent p.L2366L 0.12 TCGA-AA-3947-01 4 85710928 85710928 T - WDFY3 Frame_Shift_Del p.N1207Tfs*16 0.26 TCGA-AA-3947-01 4 860904 860904 G - GAK Frame_Shift_Del p.S905Pfs*40 0.10 TCGA-AA-3947-01 4 87705637 87705637 A G PTPN13 Missense_Mutation p.N2020S 0.45 tolerated(0.91) benign(0.002) TCGA-AA-3947-01 4 88238298 88238298 G T HSD17B13 Silent p.T132T 0.13 TCGA-AA-3947-01 4 88584199 88584199 G T DMP1 Missense_Mutation p.E423D 0.19 deleterious(0.01) unknown(0) TCGA-AA-3947-01 4 89391810 89391810 T - HERC5 Frame_Shift_Del p.L430* 0.27 TCGA-AA-3947-01 4 89591061 89591061 C A HERC3 Missense_Mutation p.L562I 0.12 tolerated(0.31) benign(0.006) TCGA-AA-3947-01 4 90170762 90170762 G T GPRIN3 Missense_Mutation p.P167H 0.09 tolerated(0.06) possibly_damaging(0.759) TCGA-AA-3947-01 4 91229441 91229441 G A CCSER1 Silent p.G2G 0.13 TCGA-AA-3947-01 4 9452211 9452211 A G DEFB131 Missense_Mutation p.I62V 0.05 tolerated_low_confidence(0.88) benign(0.031) TCGA-AA-3947-01 4 9785145 9785145 G A DRD5 3'UTR 0.37 TCGA-AA-3947-01 4 9785349 9785349 G C DRD5 3'UTR 0.33 TCGA-AA-3947-01 4 9785366 9785366 T - DRD5 3'UTR 0.18 TCGA-AA-3947-01 4 9785421 9785421 G T DRD5 3'UTR 0.22 TCGA-AA-3947-01 4 99399877 99399877 G A TSPAN5 Nonsense_Mutation p.R179* 0.19 TCGA-AA-3947-01 5 10411484 10411484 T C MARCH6 Silent p.N577N 0.06 TCGA-AA-3947-01 5 108207188 108207188 T C FER Missense_Mutation p.F263S 0.14 deleterious(0) possibly_damaging(0.655) TCGA-AA-3947-01 5 11022928 11022928 G A CTNND2 Silent p.A984A 0.37 TCGA-AA-3947-01 5 110784900 110784900 C T CAMK4 Silent p.C208C 0.14 TCGA-AA-3947-01 5 111066542 111066542 A - NREP 3'UTR 0.11 TCGA-AA-3947-01 5 112170760 112170760 C A APC Missense_Mutation p.T619N 0.07 possibly_damaging(0.702) TCGA-AA-3947-01 5 112173831 112173831 A - APC Frame_Shift_Del p.D849Ifs*12 0.25 TCGA-AA-3947-01 5 112175828 112175828 G T APC Nonsense_Mutation p.E1513* 0.37 TCGA-AA-3947-01 5 112769181 112769181 A G TSSK1B 3'UTR 0.27 TCGA-AA-3947-01 5 112770140 112770140 C T TSSK1B Missense_Mutation p.V133I 0.47 deleterious(0.04) possibly_damaging(0.545) TCGA-AA-3947-01 5 112901648 112901648 T G YTHDC2 Missense_Mutation p.L925R 0.10 deleterious(0) probably_damaging(0.993) TCGA-AA-3947-01 5 115327859 115327859 A - AQPEP Frame_Shift_Del p.N383Tfs*4 0.10 TCGA-AA-3947-01 5 115782397 115782397 C T SEMA6A Missense_Mutation p.R1002H 0.41 deleterious(0.03) benign(0.014) TCGA-AA-3947-01 5 1243834 1243834 G - SLC6A18 Frame_Shift_Del p.V434Sfs*11 0.21 TCGA-AA-3947-01 5 126776451 126776451 G T MEGF10 Nonsense_Mutation p.G752* 0.31 TCGA-AA-3947-01 5 127873218 127873218 C T FBN2 Missense_Mutation p.A27T 0.29 tolerated_low_confidence(0.16) unknown(0) TCGA-AA-3947-01 5 128320999 128320999 T C SLC27A6 Missense_Mutation p.C219R 0.17 deleterious(0.04) benign(0.158) TCGA-AA-3947-01 5 128365355 128365355 A G SLC27A6 Silent p.V546V 0.05 TCGA-AA-3947-01 5 131326645 131326645 G A ACSL6 Missense_Mutation p.R96W 0.48 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 5 131821941 131821941 A G IRF1 Splice_Site p.X223_splice 0.13 TCGA-AA-3947-01 5 131877462 131877462 T G IL5 3'UTR 0.12 TCGA-AA-3947-01 5 133895621 133895621 A G JADE2 Missense_Mutation p.D138G 0.49 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 5 133915043 133915043 C - JADE2 3'UTR 0.25 TCGA-AA-3947-01 5 134109524 134109524 A - DDX46 Frame_Shift_Del p.K197Sfs*4 0.12 TCGA-AA-3947-01 5 134164508 134164508 T - DDX46 3'UTR 0.47 TCGA-AA-3947-01 5 134192662 134192662 T - C5orf24 3'UTR 0.38 TCGA-AA-3947-01 5 134871470 134871470 C T NEUROG1 5'UTR 0.09 TCGA-AA-3947-01 5 135276335 135276335 A G FBXL21 RNA 0.41 TCGA-AA-3947-01 5 13719090 13719090 C A DNAH5 Missense_Mutation p.A4134S 0.40 benign(0.002) TCGA-AA-3947-01 5 137346786 137346786 T G FAM13B Missense_Mutation p.M201L 0.21 tolerated(0.34) possibly_damaging(0.842) TCGA-AA-3947-01 5 137424707 137424707 G A WNT8A Silent p.G153G 0.42 TCGA-AA-3947-01 5 137504219 137504219 G - BRD8 Intron 0.22 TCGA-AA-3947-01 5 13766245 13766245 C G DNAH5 Missense_Mutation p.R3314P 0.15 benign(0.025) TCGA-AA-3947-01 5 137756625 137756625 C - KDM3B Frame_Shift_Del p.P1317Rfs*10 0.29 TCGA-AA-3947-01 5 137897329 137897329 T C HSPA9 Silent p.E374E 0.41 TCGA-AA-3947-01 5 13919407 13919407 C T DNAH5 Missense_Mutation p.A285T 0.35 possibly_damaging(0.803) TCGA-AA-3947-01 5 139422207 139422207 G A NRG2 Nonsense_Mutation p.R150* 0.25 TCGA-AA-3947-01 5 139745446 139745446 C A SLC4A9 Missense_Mutation p.L604M 0.07 deleterious(0.01) probably_damaging(1) TCGA-AA-3947-01 5 139781608 139781608 T G ANKHD1 Missense_Mutation p.V19G 0.12 unknown(0) TCGA-AA-3947-01 5 140021323 140021323 G A TMCO6 Missense_Mutation p.R91H 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-AA-3947-01 5 140026866 140026866 C T NDUFA2 Silent p.V61V 0.36 TCGA-AA-3947-01 5 140181188 140181188 G A PCDHA3 Missense_Mutation p.A136T 0.15 tolerated_low_confidence(1) benign(0.002) TCGA-AA-3947-01 5 140203213 140203213 G A PCDHA5 Missense_Mutation p.R618H 0.36 tolerated_low_confidence(0.12) benign(0.152) TCGA-AA-3947-01 5 140203464 140203464 G A PCDHA5 Missense_Mutation p.A702T 0.08 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-AA-3947-01 5 140207831 140207831 T C PCDHA6 Missense_Mutation p.L52P 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3947-01 5 140209125 140209125 C T PCDHA6 Silent p.D483D 0.22 TCGA-AA-3947-01 5 140214108 140214108 G A PCDHA7 Missense_Mutation p.R47H 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.538) TCGA-AA-3947-01 5 140348558 140348558 C T PCDHAC2 Missense_Mutation p.A736V 0.20 tolerated(0.44) benign(0.006) TCGA-AA-3947-01 5 140475059 140475059 C T PCDHB2 Silent p.L229L 0.44 TCGA-AA-3947-01 5 140517163 140517163 G A PCDHB5 Missense_Mutation p.S716N 0.33 tolerated_low_confidence(0.42) benign(0.003) TCGA-AA-3947-01 5 140564086 140564086 C T PCDHB16 Missense_Mutation p.P651L 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.686) TCGA-AA-3947-01 5 140604458 140604458 C A PCDHB14 Missense_Mutation p.R461S 0.44 deleterious_low_confidence(0.01) benign(0.12) TCGA-AA-3947-01 5 140626754 140626754 C T PCDHB15 Silent p.R536R 0.36 TCGA-AA-3947-01 5 140700058 140700058 C T TAF7 5'UTR 0.45 TCGA-AA-3947-01 5 140720410 140720410 C T PCDHGA2 Silent p.G624G 0.08 TCGA-AA-3947-01 5 140737057 140737057 C T PCDHGA4 Missense_Mutation p.R764W 0.41 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-AA-3947-01 5 140746055 140746055 C T PCDHGA5 Missense_Mutation p.H720Y 0.41 tolerated_low_confidence(0.06) benign(0.049) TCGA-AA-3947-01 5 140750222 140750222 C T PCDHGB3 Silent p.S87S 0.10 TCGA-AA-3947-01 5 140764702 140764702 G A PCDHGA7 Missense_Mutation p.V746M 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.53) TCGA-AA-3947-01 5 140764824 140764825 - A PCDHGA7 Frame_Shift_Ins p.N788Kfs*2 0.23 TCGA-AA-3947-01 5 140793526 140793526 G T PCDHGA10 Missense_Mutation p.G262C 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3947-01 5 140811041 140811041 G A PCDHGA12 Missense_Mutation p.A239T 0.20 tolerated_low_confidence(0.1) benign(0.07) TCGA-AA-3947-01 5 140866821 140866821 C T PCDHGC4 Missense_Mutation p.A694V 0.10 deleterious(0.05) benign(0.006) TCGA-AA-3947-01 5 141004824 141004824 T C HDAC3 Missense_Mutation p.T390A 0.40 tolerated(0.5) benign(0.001) TCGA-AA-3947-01 5 141381472 141381472 G A GNPDA1 3'UTR 0.17 TCGA-AA-3947-01 5 141391731 141391731 A - GNPDA1 5'UTR 0.44 TCGA-AA-3947-01 5 145616938 145616938 G A RBM27 Missense_Mutation p.V408M 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.642) TCGA-AA-3947-01 5 145834701 145834701 C T TCERG1 Nonsense_Mutation p.R48* 0.37 TCGA-AA-3947-01 5 145895258 145895258 G A GPR151 Missense_Mutation p.A140V 0.12 tolerated(0.95) probably_damaging(0.936) TCGA-AA-3947-01 5 145969578 145969578 G A PPP2R2B Missense_Mutation p.P425S 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-AA-3947-01 5 14608915 14608915 T - FAM105A Frame_Shift_Del p.S231Qfs*13 0.32 TCGA-AA-3947-01 5 147480074 147480074 G C SPINK5 Missense_Mutation p.E384Q 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3947-01 5 147661753 147661753 C T SPINK13 Silent p.G65G 0.10 TCGA-AA-3947-01 5 147813059 147813059 A T FBXO38 Missense_Mutation p.D834V 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 5 149313514 149313514 G T PDE6A Missense_Mutation p.N232K 0.38 tolerated(0.41) benign(0.005) TCGA-AA-3947-01 5 149429962 149429962 C G HMGXB3 Missense_Mutation p.L1117V 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 5 149737297 149737297 G - TCOF1 5'Flank 0.14 TCGA-AA-3947-01 5 149998079 149998079 G - SYNPO Frame_Shift_Del p.P52Lfs*59 0.24 TCGA-AA-3947-01 5 150502564 150502564 C T ANXA6 Missense_Mutation p.E383K 0.49 deleterious(0.03) possibly_damaging(0.662) TCGA-AA-3947-01 5 150917504 150917504 G T FAT2 Missense_Mutation p.L3015I 0.40 benign(0.215) TCGA-AA-3947-01 5 151043781 151043781 G A SPARC Silent p.T250T 0.17 TCGA-AA-3947-01 5 151183590 151183590 C T G3BP1 Missense_Mutation p.R447C 0.41 deleterious(0.04) benign(0.002) TCGA-AA-3947-01 5 153674418 153674418 G T GALNT10 Missense_Mutation p.G68W 0.32 deleterious(0.01) possibly_damaging(0.817) TCGA-AA-3947-01 5 153789116 153789116 G A GALNT10 Missense_Mutation p.A394T 0.28 deleterious(0) possibly_damaging(0.895) TCGA-AA-3947-01 5 153857039 153857039 C T HAND1 Missense_Mutation p.R177Q 0.09 deleterious(0.02) benign(0.372) TCGA-AA-3947-01 5 154183853 154183853 T C LARP1 Silent p.R767R 0.33 TCGA-AA-3947-01 5 154394629 154394629 C T KIF4B Missense_Mutation p.R404C 0.38 tolerated(0.06) benign(0.023) TCGA-AA-3947-01 5 156533811 156533811 T C HAVCR2 Missense_Mutation p.D74G 0.34 tolerated(0.06) benign(0.03) TCGA-AA-3947-01 5 156671433 156671434 - TG ITK Frame_Shift_Ins p.E468Vfs*37 0.35 TCGA-AA-3947-01 5 156908910 156908910 T A ADAM19 Silent p.A864A 0.06 TCGA-AA-3947-01 5 158743710 158743710 A G IL12B Missense_Mutation p.S324P 0.09 deleterious(0.03) benign(0.417) TCGA-AA-3947-01 5 159344561 159344561 G A ADRA1B Missense_Mutation p.A217T 0.06 tolerated(0.27) benign(0.01) TCGA-AA-3947-01 5 159680741 159680741 C T CCNJL Missense_Mutation p.G318S 0.34 tolerated(0.91) benign(0.006) TCGA-AA-3947-01 5 162880887 162880887 C T NUDCD2 3'UTR 0.41 TCGA-AA-3947-01 5 169021405 169021405 G A SPDL1 Missense_Mutation p.R230H 0.11 tolerated(0.05) possibly_damaging(0.852) TCGA-AA-3947-01 5 169469090 169469090 A C DOCK2 Missense_Mutation p.K1277T 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 5 171765668 171765668 C - SH3PXD2B Frame_Shift_Del p.G814Afs*37 0.28 TCGA-AA-3947-01 5 172342500 172342500 T G ERGIC1 Intron 0.11 TCGA-AA-3947-01 5 173124 173124 G A PLEKHG4B Missense_Mutation p.S1032N 0.07 deleterious(0) probably_damaging(0.995) TCGA-AA-3947-01 5 173155 173155 C T PLEKHG4B Silent p.D1042D 0.44 TCGA-AA-3947-01 5 175535635 175535635 T G FAM153B Missense_Mutation p.V220G 0.36 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-AA-3947-01 5 176004425 176004425 C T CDHR2 Missense_Mutation p.S407L 0.41 tolerated(0.51) benign(0.217) TCGA-AA-3947-01 5 176308520 176308520 G A HK3 Missense_Mutation p.R804W 0.38 deleterious(0.02) benign(0.081) TCGA-AA-3947-01 5 176733034 176733034 G A MXD3 3'Flank 0.25 TCGA-AA-3947-01 5 176794499 176794499 G T RGS14 Nonsense_Mutation p.G190* 0.34 TCGA-AA-3947-01 5 177168326 177168326 G A FAM153A Silent p.D47D 0.15 TCGA-AA-3947-01 5 177565142 177565143 GA - RMND5B Frame_Shift_Del p.E10Afs*16 0.32 TCGA-AA-3947-01 5 178140325 178140326 - T ZNF354A Frame_Shift_Ins p.T185Nfs*6 0.26 TCGA-AA-3947-01 5 178415998 178415998 G A GRM6 Missense_Mutation p.P431L 0.13 deleterious(0.02) benign(0.164) TCGA-AA-3947-01 5 178506334 178506334 C T ZNF354C Nonsense_Mutation p.R301* 0.26 TCGA-AA-3947-01 5 178506423 178506423 C T ZNF354C Silent p.C330C 0.38 TCGA-AA-3947-01 5 179331747 179331747 G T TBC1D9B Missense_Mutation p.L62M 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 5 180057082 180057082 G A FLT4 Silent p.D179D 0.45 TCGA-AA-3947-01 5 180058748 180058748 G - FLT4 Frame_Shift_Del p.P30Rfs*3 0.19 TCGA-AA-3947-01 5 180687110 180687110 T - TRIM52 Frame_Shift_Del p.K235Nfs*39 0.09 TCGA-AA-3947-01 5 19483492 19483492 G A CDH18 Silent p.C600C 0.39 TCGA-AA-3947-01 5 21802410 21802410 G A CDH12 Silent p.S374S 0.33 TCGA-AA-3947-01 5 23527757 23527757 C T PRDM9 Missense_Mutation p.H854Y 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3947-01 5 24488246 24488246 A G CDH10 Silent p.F631F 0.21 TCGA-AA-3947-01 5 2748576 2748576 C T IRX2 Missense_Mutation p.A416T 0.25 tolerated_low_confidence(0.08) benign(0.001) TCGA-AA-3947-01 5 31267568 31267568 C T CDH6 5'UTR 0.38 TCGA-AA-3947-01 5 31472171 31472171 G A DROSHA Missense_Mutation p.T747M 0.34 tolerated(1) benign(0) TCGA-AA-3947-01 5 31493321 31493322 - G DROSHA Frame_Shift_Ins p.L612Pfs*8 0.26 TCGA-AA-3947-01 5 31799656 31799657 - G PDZD2 Frame_Shift_Ins p.K104Qfs*38 0.35 TCGA-AA-3947-01 5 32790458 32790458 C T NPR3 3'UTR 0.36 TCGA-AA-3947-01 5 33453456 33453456 G A TARS Missense_Mutation p.R164H 0.18 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 5 33596047 33596047 A G ADAMTS12 Silent p.C882C 0.19 TCGA-AA-3947-01 5 33937182 33937182 C T RXFP3 Missense_Mutation p.R113C 0.43 deleterious(0) probably_damaging(0.959) TCGA-AA-3947-01 5 33938094 33938094 C A RXFP3 Missense_Mutation p.P417T 0.41 deleterious(0.01) benign(0.03) TCGA-AA-3947-01 5 34004713 34004713 C T AMACR Missense_Mutation p.R173H 0.10 tolerated(0.11) benign(0.013) TCGA-AA-3947-01 5 34913593 34913594 - A RAD1 Frame_Shift_Ins p.G97Wfs*44 0.28 TCGA-AA-3947-01 5 35873734 35873734 G T IL7R Missense_Mutation p.E230D 0.08 tolerated(0.29) benign(0.001) TCGA-AA-3947-01 5 35955790 35955790 C T UGT3A1 Missense_Mutation p.D418N 0.40 deleterious(0.03) benign(0.22) TCGA-AA-3947-01 5 35955827 35955827 A G UGT3A1 Silent p.N405N 0.22 TCGA-AA-3947-01 5 36195080 36195081 - T NADK2 3'UTR 0.41 TCGA-AA-3947-01 5 36953776 36953776 C T NIPBL 5'UTR 0.38 TCGA-AA-3947-01 5 36985386 36985386 A C NIPBL Missense_Mutation p.T702P 0.19 tolerated_low_confidence(0.17) benign(0.221) TCGA-AA-3947-01 5 37064770 37064770 A C NIPBL Missense_Mutation p.T2731P 0.25 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-AA-3947-01 5 37181029 37181029 C A C5orf42 Missense_Mutation p.V1834F 0.10 tolerated(0.15) benign(0.024) TCGA-AA-3947-01 5 37196023 37196023 C T C5orf42 Missense_Mutation p.A1250T 0.42 tolerated(0.05) benign(0.014) TCGA-AA-3947-01 5 37605224 37605224 C T WDR70 Missense_Mutation p.R326W 0.07 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 5 38945041 38945041 C A RICTOR Missense_Mutation p.S1588I 0.09 deleterious(0.01) possibly_damaging(0.791) TCGA-AA-3947-01 5 40832778 40832778 T C RPL37 Intron 0.12 TCGA-AA-3947-01 5 41005653 41005653 C T MROH2B Missense_Mutation p.G1282S 0.19 tolerated(0.32) benign(0.245) TCGA-AA-3947-01 5 41805770 41805770 C T OXCT1 Missense_Mutation p.R285Q 0.13 tolerated(0.21) benign(0.002) TCGA-AA-3947-01 5 42695039 42695039 A G GHR Missense_Mutation p.Q96R 0.08 tolerated(0.24) benign(0.252) TCGA-AA-3947-01 5 50137942 50137942 C T PARP8 3'UTR 0.40 TCGA-AA-3947-01 5 52214628 52214629 - A ITGA1 Frame_Shift_Ins p.N687Kfs*19 0.14 TCGA-AA-3947-01 5 52776663 52776663 G C FST Silent p.L14L 0.39 TCGA-AA-3947-01 5 54326353 54326353 T - GZMK Frame_Shift_Del p.F102Lfs*36 0.14 TCGA-AA-3947-01 5 54420640 54420640 C T CDC20B Silent p.T402T 0.36 TCGA-AA-3947-01 5 54527427 54527427 T G CCNO Missense_Mutation p.S277R 0.08 tolerated(0.33) benign(0.016) TCGA-AA-3947-01 5 54527548 54527550 GAA - CCNO In_Frame_Del p.F236del 0.39 TCGA-AA-3947-01 5 56219741 56219741 C T MIER3 Splice_Site p.X350_splice 0.34 TCGA-AA-3947-01 5 56526957 56526957 C T GPBP1 Missense_Mutation p.R81C 0.19 deleterious(0.04) benign(0.187) TCGA-AA-3947-01 5 56777684 56777684 A G ACTBL2 Missense_Mutation p.M284T 0.33 deleterious_low_confidence(0.04) benign(0.008) TCGA-AA-3947-01 5 59189328 59189328 T C PDE4D Missense_Mutation p.Y41C 0.13 deleterious_low_confidence(0) benign(0) TCGA-AA-3947-01 5 60455859 60455859 A G SMIM15 Missense_Mutation p.M47T 0.40 tolerated(0.21) benign(0.079) TCGA-AA-3947-01 5 60821750 60821750 A G ZSWIM6 Missense_Mutation p.H546R 0.08 tolerated(0.47) benign(0.012) TCGA-AA-3947-01 5 61778948 61778948 G A IPO11 Silent p.Q323Q 0.05 TCGA-AA-3947-01 5 64181359 64181359 A - CWC27 Frame_Shift_Del p.R345Efs*26 0.29 TCGA-AA-3947-01 5 666222 666222 T G TPPP Missense_Mutation p.T110P 0.49 deleterious(0.01) probably_damaging(0.95) TCGA-AA-3947-01 5 6754921 6754921 G A PAPD7 Missense_Mutation p.G498S 0.19 tolerated_low_confidence(0.45) benign(0.001) TCGA-AA-3947-01 5 68555711 68555711 G A CDK7 Missense_Mutation p.A159T 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 5 70819935 70819935 A G BDP1 Missense_Mutation p.T1853A 0.07 tolerated(0.07) benign(0.028) TCGA-AA-3947-01 5 70939715 70939716 - A MCCC2 Frame_Shift_Ins p.T385Yfs*27 0.30 TCGA-AA-3947-01 5 71015749 71015749 C T CARTPT Missense_Mutation p.R68C 0.13 deleterious(0) possibly_damaging(0.572) TCGA-AA-3947-01 5 71627179 71627179 G T PTCD2 Missense_Mutation p.A149S 0.38 deleterious(0) probably_damaging(0.981) TCGA-AA-3947-01 5 71739686 71739686 C T ZNF366 Missense_Mutation p.G711D 0.14 deleterious_low_confidence(0) benign(0.008) TCGA-AA-3947-01 5 73048945 73048945 C A ARHGEF28 Silent p.A131A 0.12 TCGA-AA-3947-01 5 73931127 73931127 C A ENC1 Missense_Mutation p.G395V 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 5 74009374 74009374 G A HEXB Missense_Mutation p.R272H 0.32 tolerated(0.26) benign(0.002) TCGA-AA-3947-01 5 74324982 74324983 - G GCNT4 Frame_Shift_Ins p.H294Pfs*2 0.36 TCGA-AA-3947-01 5 77004108 77004108 T - TBCA Frame_Shift_Del p.M40* 0.31 TCGA-AA-3947-01 5 78328510 78328510 C A DMGDH Missense_Mutation p.R506M 0.11 deleterious(0.02) benign(0.221) TCGA-AA-3947-01 5 78376582 78376582 G - BHMT2 Frame_Shift_Del p.I113Sfs*24 0.30 TCGA-AA-3947-01 5 78379505 78379505 C A BHMT2 Missense_Mutation p.A279D 0.05 deleterious(0) probably_damaging(0.979) TCGA-AA-3947-01 5 7889311 7889311 T C MTRR Missense_Mutation p.V444A 0.20 deleterious(0) benign(0.345) TCGA-AA-3947-01 5 78919076 78919076 A - PAPD4 Frame_Shift_Del p.R77Dfs*2 0.23 TCGA-AA-3947-01 5 82491691 82491691 A - XRCC4 Frame_Shift_Del p.N141Mfs*12 0.17 TCGA-AA-3947-01 5 82937441 82937441 G A HAPLN1 Silent p.S313S 0.21 TCGA-AA-3947-01 5 83360607 83360607 G - EDIL3 Frame_Shift_Del p.I289* 0.29 TCGA-AA-3947-01 5 87501637 87501637 A T TMEM161B Missense_Mutation p.I265N 0.39 tolerated(0.1) possibly_damaging(0.824) TCGA-AA-3947-01 5 89941876 89941876 T C GPR98 Missense_Mutation p.I997T 0.08 possibly_damaging(0.803) TCGA-AA-3947-01 5 93856129 93856129 A T KIAA0825 Missense_Mutation p.I265N 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 5 93856146 93856146 A T KIAA0825 Missense_Mutation p.F259L 0.42 tolerated(0.98) possibly_damaging(0.526) TCGA-AA-3947-01 5 94756029 94756029 A G FAM81B Silent p.T193T 0.38 TCGA-AA-3947-01 5 94850572 94850572 C T TTC37 Missense_Mutation p.C897Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 5 94877607 94877607 A C TTC37 Missense_Mutation p.L80V 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 5 95233946 95233946 C G ELL2 Missense_Mutation p.G508A 0.37 tolerated(0.73) benign(0) TCGA-AA-3947-01 5 98212165 98212165 C T CHD1 Missense_Mutation p.R1112H 0.09 deleterious(0) probably_damaging(0.962) TCGA-AA-3947-01 6 100896039 100896039 C T SIM1 Missense_Mutation p.R278H 0.44 deleterious(0) possibly_damaging(0.696) TCGA-AA-3947-01 6 101248237 101248237 C A ASCC3 Nonsense_Mutation p.E356* 0.18 TCGA-AA-3947-01 6 102503432 102503433 AA - GRIK2 Frame_Shift_Del p.N849Rfs*10 0.28 TCGA-AA-3947-01 6 10398591 10398591 G A TFAP2A 3'UTR 0.05 TCGA-AA-3947-01 6 10529706 10529706 A G GCNT2 Missense_Mutation p.I188V 0.14 tolerated(0.07) possibly_damaging(0.562) TCGA-AA-3947-01 6 105606312 105606312 T - POPDC3 3'UTR 0.09 TCGA-AA-3947-01 6 106553334 106553334 C T PRDM1 Silent p.G433G 0.37 TCGA-AA-3947-01 6 108502792 108502792 C T NR2E1 Missense_Mutation p.A311V 0.41 tolerated(1) benign(0.1) TCGA-AA-3947-01 6 108508612 108508612 G A NR2E1 Missense_Mutation p.G368D 0.08 deleterious(0) probably_damaging(0.984) TCGA-AA-3947-01 6 109771540 109771540 C T MICAL1 Missense_Mutation p.R385H 0.40 deleterious(0.04) possibly_damaging(0.901) TCGA-AA-3947-01 6 11105450 11105450 G A ERVFRD-1 Missense_Mutation p.L32F 0.12 deleterious(0) probably_damaging(0.994) TCGA-AA-3947-01 6 116901505 116901505 G A RWDD1 Missense_Mutation p.A41T 0.25 tolerated(0.17) benign(0.109) TCGA-AA-3947-01 6 117890768 117890768 C A GOPC Missense_Mutation p.K348N 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3947-01 6 119147418 119147418 G A MCM9 Missense_Mutation p.T618I 0.15 deleterious(0) probably_damaging(0.974) TCGA-AA-3947-01 6 121768709 121768709 G A GJA1 Missense_Mutation p.R239Q 0.34 tolerated(0.13) benign(0.009) TCGA-AA-3947-01 6 121769082 121769082 T G GJA1 Silent p.P363P 0.11 TCGA-AA-3947-01 6 123594495 123594495 T - TRDN Frame_Shift_Del p.V538Cfs*8 0.21 TCGA-AA-3947-01 6 126080274 126080274 G A HEY2 Missense_Mutation p.A114T 0.40 deleterious(0) benign(0.195) TCGA-AA-3947-01 6 127767923 127767923 T C KIAA0408 Missense_Mutation p.K514R 0.05 tolerated(0.07) benign(0.032) TCGA-AA-3947-01 6 127796640 127796640 C T SOGA3 Missense_Mutation p.R844H 0.37 deleterious(0) possibly_damaging(0.891) TCGA-AA-3947-01 6 127796768 127796768 C T SOGA3 Silent p.A801A 0.41 TCGA-AA-3947-01 6 128134568 128134568 T - THEMIS Frame_Shift_Del p.V407Wfs*2 0.07 TCGA-AA-3947-01 6 128318089 128318089 T - PTPRK Frame_Shift_Del p.D909Ifs*13 0.26 TCGA-AA-3947-01 6 128540178 128540178 C T PTPRK Missense_Mutation p.A253T 0.30 deleterious(0.03) benign(0.313) TCGA-AA-3947-01 6 129813152 129813152 T C LAMA2 Missense_Mutation p.F2669L 0.07 tolerated(0.72) benign(0.142) TCGA-AA-3947-01 6 132793419 132793419 A G STX7 Splice_Site p.X83_splice 0.08 TCGA-AA-3947-01 6 132910784 132910784 C T TAAR5 Silent p.A14A 0.33 TCGA-AA-3947-01 6 133013660 133013660 C A VNN1 Missense_Mutation p.G297V 0.19 deleterious(0) probably_damaging(0.981) TCGA-AA-3947-01 6 13365113 13365113 G A GFOD1 Silent p.C345C 0.40 TCGA-AA-3947-01 6 133836572 133836572 A G EYA4 Missense_Mutation p.R539G 0.31 deleterious(0) possibly_damaging(0.815) TCGA-AA-3947-01 6 136599665 136599667 TCT - BCLAF1 In_Frame_Del p.R118del 0.17 TCGA-AA-3947-01 6 136686902 136686902 C T MAP7 Missense_Mutation p.R437Q 0.10 tolerated(0.53) benign(0.34) TCGA-AA-3947-01 6 142691838 142691838 G A GPR126 Missense_Mutation p.S326N 0.44 deleterious(0.02) possibly_damaging(0.831) TCGA-AA-3947-01 6 143793319 143793319 T C PEX3 Missense_Mutation p.S201P 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-AA-3947-01 6 143999253 143999253 G A PHACTR2 5'UTR 0.06 TCGA-AA-3947-01 6 145073037 145073037 A G UTRN Silent p.L2768L 0.41 TCGA-AA-3947-01 6 146264843 146264843 A G SHPRH Silent p.D558D 0.39 TCGA-AA-3947-01 6 146350582 146350582 G T GRM1 5'UTR 0.29 TCGA-AA-3947-01 6 147124584 147124584 T - ADGB Intron 0.27 TCGA-AA-3947-01 6 148865444 148865444 G A SASH1 Silent p.T946T 0.08 TCGA-AA-3947-01 6 150240212 150240212 C A RAET1G Missense_Mutation p.G200C 0.06 tolerated(0.23) probably_damaging(0.983) TCGA-AA-3947-01 6 150285204 150285204 C A ULBP1 Missense_Mutation p.P7T 0.10 tolerated(0.49) unknown(0) TCGA-AA-3947-01 6 151055001 151055001 T - PLEKHG1 Frame_Shift_Del p.S63Pfs*70 0.16 TCGA-AA-3947-01 6 151673193 151673193 G T AKAP12 Missense_Mutation p.A1223S 0.24 tolerated(0.12) benign(0.02) TCGA-AA-3947-01 6 151743691 151743691 A G RMND1 Silent p.I329I 0.07 TCGA-AA-3947-01 6 151917564 151917564 G A CCDC170 Missense_Mutation p.R521H 0.12 deleterious(0.04) benign(0.239) TCGA-AA-3947-01 6 152129201 152129201 T C ESR1 Missense_Mutation p.Y52H 0.31 tolerated(0.45) possibly_damaging(0.781) TCGA-AA-3947-01 6 153332695 153332695 T - RGS17 3'UTR 0.27 TCGA-AA-3947-01 6 154762446 154762446 G T CNKSR3 Missense_Mutation p.L163M 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 6 15496636 15496636 G - JARID2 Frame_Shift_Del p.A396Rfs*18 0.29 TCGA-AA-3947-01 6 15520318 15520318 G A JARID2 Missense_Mutation p.V1193I 0.07 tolerated(0.2) probably_damaging(0.998) TCGA-AA-3947-01 6 155450713 155450713 T A TIAM2 Missense_Mutation p.V119D 0.44 tolerated_low_confidence(0.13) benign(0.004) TCGA-AA-3947-01 6 155757594 155757594 C A NOX3 Silent p.V252V 0.17 TCGA-AA-3947-01 6 155761235 155761235 C T NOX3 Missense_Mutation p.V175I 0.21 tolerated(0.5) benign(0.004) TCGA-AA-3947-01 6 159636082 159636082 G A FNDC1 Missense_Mutation p.R189H 0.44 deleterious(0.04) unknown(0) TCGA-AA-3947-01 6 159654306 159654306 G A FNDC1 Missense_Mutation p.R921Q 0.32 tolerated_low_confidence(0.06) unknown(0) TCGA-AA-3947-01 6 160448246 160448246 C T IGF2R Missense_Mutation p.R226W 0.11 deleterious(0) possibly_damaging(0.831) TCGA-AA-3947-01 6 161006078 161006078 G A LPA Missense_Mutation p.A1430V 0.20 tolerated(0.1) possibly_damaging(0.686) TCGA-AA-3947-01 6 161157990 161157990 T G PLG Missense_Mutation p.C585G 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 6 1612230 1612230 G A FOXC1 Missense_Mutation p.G517D 0.44 deleterious(0) possibly_damaging(0.617) TCGA-AA-3947-01 6 161514053 161514053 G A MAP3K4 Missense_Mutation p.A1105T 0.36 tolerated(0.18) benign(0.14) TCGA-AA-3947-01 6 16295324 16295324 G A GMPR Silent p.T315T 0.32 TCGA-AA-3947-01 6 16327508 16327508 C A ATXN1 Missense_Mutation p.G345V 0.27 tolerated(0.31) benign(0.001) TCGA-AA-3947-01 6 163836318 163836318 G T QKI Silent p.L31L 0.47 TCGA-AA-3947-01 6 166580295 166580295 C T T Missense_Mutation p.A86T 0.45 deleterious(0) possibly_damaging(0.756) TCGA-AA-3947-01 6 166721511 166721511 G T PRR18 Silent p.P40P 0.36 TCGA-AA-3947-01 6 168377079 168377079 C - RP3-470B24.5 RNA 0.26 TCGA-AA-3947-01 6 170068099 170068099 C T WDR27 Silent p.A213A 0.07 TCGA-AA-3947-01 6 170594193 170594193 G T DLL1 Missense_Mutation p.P355T 0.11 deleterious(0.02) probably_damaging(0.956) TCGA-AA-3947-01 6 17543330 17543330 G A CAP2 Missense_Mutation p.V389M 0.40 deleterious(0.02) probably_damaging(1) TCGA-AA-3947-01 6 17781486 17781486 G T KIF13A Silent p.S1197S 0.21 TCGA-AA-3947-01 6 18222307 18222307 A - KDM1B 3'UTR 0.11 TCGA-AA-3947-01 6 18236733 18236733 G A DEK Silent p.L333L 0.33 TCGA-AA-3947-01 6 20152886 20152887 - A MBOAT1 Frame_Shift_Ins p.G72Wfs*31 0.32 TCGA-AA-3947-01 6 20846324 20846324 C G CDKAL1 Silent p.T219T 0.09 TCGA-AA-3947-01 6 24556935 24556935 G T KIAA0319 Silent p.G919G 0.37 TCGA-AA-3947-01 6 25495385 25495385 T G LRRC16A Missense_Mutation p.S423A 0.10 tolerated(1) benign(0.021) TCGA-AA-3947-01 6 25973411 25973411 G A TRIM38 Missense_Mutation p.V258M 0.08 tolerated(0.46) benign(0.175) TCGA-AA-3947-01 6 26234735 26234735 C T HIST1H1D Missense_Mutation p.A143T 0.09 tolerated(0.63) unknown(0) TCGA-AA-3947-01 6 27806402 27806403 - T HIST1H2BN 5'Flank 0.43 TCGA-AA-3947-01 6 27833142 27833142 C T HIST1H2AL Missense_Mutation p.R4C 0.05 deleterious_low_confidence(0.01) benign(0.012) TCGA-AA-3947-01 6 28539854 28539854 A G SCAND3 Missense_Mutation p.F1271S 0.08 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-AA-3947-01 6 28541087 28541087 G A SCAND3 Missense_Mutation p.A860V 0.39 deleterious(0.04) probably_damaging(0.994) TCGA-AA-3947-01 6 30153556 30153556 G A TRIM26 3'UTR 0.12 TCGA-AA-3947-01 6 30227710 30227710 C T HCG17 Intron 0.29 TCGA-AA-3947-01 6 30228211 30228211 G A HCG17 Intron 0.15 TCGA-AA-3947-01 6 30617476 30617476 C A C6orf136 Missense_Mutation p.P253T 0.05 deleterious_low_confidence(0.04) probably_damaging(0.982) TCGA-AA-3947-01 6 30644892 30644892 G A PPP1R18 3'UTR 0.35 TCGA-AA-3947-01 6 30691260 30691260 G - TUBB Frame_Shift_Del p.G142Afs*23 0.24 TCGA-AA-3947-01 6 30889394 30889394 G A VARS2 Missense_Mutation p.R584Q 0.26 deleterious(0.03) possibly_damaging(0.629) TCGA-AA-3947-01 6 31127242 31127242 C T TCF19 5'UTR 0.11 TCGA-AA-3947-01 6 31127312 31127312 C - TCF19 Frame_Shift_Del p.A25Pfs*72 0.25 TCGA-AA-3947-01 6 31239549 31239549 A G HLA-C Missense_Mutation p.F57S 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3947-01 6 31515466 31515466 G T NFKBIL1 5'UTR 0.41 TCGA-AA-3947-01 6 31557872 31557873 - G NCR3 Frame_Shift_Ins p.E26* 0.13 TCGA-AA-3947-01 6 31627213 31627213 C - C6orf47 Frame_Shift_Del p.G171Afs*12 0.09 TCGA-AA-3947-01 6 31644797 31644797 G T LY6G5C Missense_Mutation p.F130L 0.07 tolerated(0.21) possibly_damaging(0.558) TCGA-AA-3947-01 6 32020477 32020477 C T TNXB Missense_Mutation p.V3027M 0.36 probably_damaging(0.938) TCGA-AA-3947-01 6 32024378 32024378 C A TNXB Missense_Mutation p.V2710F 0.42 benign(0.241) TCGA-AA-3947-01 6 32036719 32036719 C A TNXB Nonsense_Mutation p.G1928* 0.42 TCGA-AA-3947-01 6 32063797 32063797 G A TNXB Silent p.Y611Y 0.42 TCGA-AA-3947-01 6 32138840 32138840 G A AGPAT1 Missense_Mutation p.R70C 0.13 tolerated(0.1) benign(0.076) TCGA-AA-3947-01 6 3225839 3225839 G A TUBB2B Missense_Mutation p.R162C 0.29 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-AA-3947-01 6 32372927 32372927 T C BTNL2 Silent p.T72T 0.36 TCGA-AA-3947-01 6 3273408 3273408 C - SLC22A23 Frame_Shift_Del p.E648Sfs*36 0.17 TCGA-AA-3947-01 6 33282844 33282844 G - ZBTB22 Frame_Shift_Del p.P617Hfs*96 0.31 TCGA-AA-3947-01 6 33648152 33648152 C T ITPR3 Missense_Mutation p.T1424M 0.12 deleterious(0) probably_damaging(0.97) TCGA-AA-3947-01 6 33654827 33654827 G A ITPR3 Silent p.R2007R 0.17 TCGA-AA-3947-01 6 34505969 34505969 T C SPDEF 3'UTR 0.40 TCGA-AA-3947-01 6 34804017 34804017 C A UHRF1BP1 Missense_Mutation p.R309S 0.09 tolerated(0.88) benign(0.002) TCGA-AA-3947-01 6 35995921 35995921 G A MAPK14 5'UTR 0.38 TCGA-AA-3947-01 6 36198325 36198325 C T BRPF3 Missense_Mutation p.A1186V 0.11 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 6 36983627 36983627 C T FGD2 Silent p.A371A 0.41 TCGA-AA-3947-01 6 37605853 37605853 A G MDGA1 Intron 0.41 TCGA-AA-3947-01 6 38854775 38854775 T - DNAH8 Frame_Shift_Del p.F2607Lfs*22 0.20 TCGA-AA-3947-01 6 39073484 39073484 G A SAYSD1 Silent p.C92C 0.07 TCGA-AA-3947-01 6 39895269 39895269 C - MOCS1 Frame_Shift_Del p.A17Qfs*79 0.21 TCGA-AA-3947-01 6 4070051 4070051 G A FAM217A Nonsense_Mutation p.Q136* 0.43 TCGA-AA-3947-01 6 407725 407725 G A IRF4 3'UTR 0.40 TCGA-AA-3947-01 6 4099408 4099408 C A C6orf201 Missense_Mutation p.P87H 0.06 deleterious(0) probably_damaging(0.98) TCGA-AA-3947-01 6 42152575 42152575 C A GUCA1B Missense_Mutation p.R194I 0.26 deleterious(0.01) possibly_damaging(0.836) TCGA-AA-3947-01 6 42690068 42690068 G A PRPH2 Missense_Mutation p.A2V 0.26 tolerated(0.34) benign(0.03) TCGA-AA-3947-01 6 42995125 42995125 C T RRP36 Nonsense_Mutation p.R185* 0.27 TCGA-AA-3947-01 6 43019950 43019950 C T CUL7 Missense_Mutation p.A245T 0.34 deleterious(0.01) possibly_damaging(0.743) TCGA-AA-3947-01 6 43097528 43097528 C T PTK7 Missense_Mutation p.T152I 0.40 tolerated(0.33) benign(0.021) TCGA-AA-3947-01 6 43188319 43188319 G A CUL9 Silent p.S2135S 0.48 TCGA-AA-3947-01 6 43223562 43223562 A G TTBK1 Missense_Mutation p.S277G 0.10 benign(0.309) TCGA-AA-3947-01 6 43412601 43412601 C T ABCC10 Missense_Mutation p.A922V 0.34 tolerated(0.4) benign(0.01) TCGA-AA-3947-01 6 43483391 43483391 C T YIPF3 Missense_Mutation p.A113T 0.09 deleterious(0.01) possibly_damaging(0.732) TCGA-AA-3947-01 6 43538651 43538651 C T XPO5 Silent p.E127E 0.13 TCGA-AA-3947-01 6 44413594 44413594 G A CDC5L Missense_Mutation p.R765Q 0.07 deleterious(0.04) benign(0.01) TCGA-AA-3947-01 6 46644334 46644334 T - SLC25A27 3'UTR 0.12 TCGA-AA-3947-01 6 46656649 46656649 C T TDRD6 Missense_Mutation p.P262S 0.17 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 6 46977647 46977647 C T GPR110 Silent p.T508T 0.40 TCGA-AA-3947-01 6 47445966 47445966 G A CD2AP 5'UTR 0.13 TCGA-AA-3947-01 6 47567086 47567086 G A CD2AP Missense_Mutation p.V442I 0.43 tolerated(0.16) benign(0.003) TCGA-AA-3947-01 6 47682676 47682676 G A GPR115 Silent p.P565P 0.18 TCGA-AA-3947-01 6 47763066 47763066 G A OPN5 Missense_Mutation p.V175I 0.33 deleterious(0) benign(0.052) TCGA-AA-3947-01 6 47846082 47846082 C T PTCHD4 Missense_Mutation p.C833Y 0.05 deleterious(0) probably_damaging(0.974) TCGA-AA-3947-01 6 47846983 47846983 T A PTCHD4 Missense_Mutation p.S533C 0.28 deleterious(0) benign(0.358) TCGA-AA-3947-01 6 4892497 4892497 G A CDYL Missense_Mutation p.G192D 0.24 tolerated(0.06) benign(0.059) TCGA-AA-3947-01 6 50683054 50683054 G A TFAP2D Missense_Mutation p.A89T 0.09 tolerated(0.12) benign(0.042) TCGA-AA-3947-01 6 51619701 51619702 - G PKHD1 Frame_Shift_Ins p.H2893Pfs*2 0.28 TCGA-AA-3947-01 6 51890569 51890569 C T PKHD1 Missense_Mutation p.V1347M 0.18 tolerated(0.27) benign(0.003) TCGA-AA-3947-01 6 51927423 51927423 C T PKHD1 Missense_Mutation p.V338I 0.37 tolerated(0.08) benign(0.002) TCGA-AA-3947-01 6 52285235 52285235 G A EFHC1 Silent p.L9L 0.09 TCGA-AA-3947-01 6 52878550 52878550 C A ICK Missense_Mutation p.E354D 0.08 tolerated(0.6) benign(0.003) TCGA-AA-3947-01 6 55639011 55639011 A C BMP5 Missense_Mutation p.L288R 0.08 deleterious(0) probably_damaging(0.988) TCGA-AA-3947-01 6 56473821 56473821 C T DST Intron 0.06 TCGA-AA-3947-01 6 56484757 56484757 G A DST Intron 0.05 TCGA-AA-3947-01 6 6175046 6175046 T - F13A1 Frame_Shift_Del p.K505Sfs*9 0.24 TCGA-AA-3947-01 6 637758 637758 A G EXOC2 Missense_Mutation p.W21R 0.15 deleterious(0.03) probably_damaging(0.992) TCGA-AA-3947-01 6 637793 637794 - G EXOC2 Frame_Shift_Ins p.L9Pfs*9 0.26 TCGA-AA-3947-01 6 63990353 63990353 C T LGSN Missense_Mutation p.R368H 0.12 tolerated(0.23) possibly_damaging(0.691) TCGA-AA-3947-01 6 65301216 65301216 C A EYS Missense_Mutation p.R1515L 0.44 tolerated_low_confidence(0.08) benign(0.031) TCGA-AA-3947-01 6 72943543 72943543 G A RIMS1 Silent p.S582S 0.32 TCGA-AA-3947-01 6 74440112 74440112 G A CD109 Missense_Mutation p.G108R 0.39 deleterious(0) probably_damaging(0.993) TCGA-AA-3947-01 6 75833783 75833783 C T COL12A1 Missense_Mutation p.R2251H 0.36 possibly_damaging(0.465) TCGA-AA-3947-01 6 7585201 7585201 C A DSP Missense_Mutation p.T2569N 0.12 benign(0) TCGA-AA-3947-01 6 76022432 76022432 A T FILIP1 Missense_Mutation p.V1039D 0.07 deleterious(0) probably_damaging(0.972) TCGA-AA-3947-01 6 8080056 8080056 T C EEF1E1 3'UTR 0.47 TCGA-AA-3947-01 6 83819938 83819938 C T DOPEY1 Missense_Mutation p.R196C 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 6 83840090 83840090 A G DOPEY1 Missense_Mutation p.I864V 0.46 tolerated(0.09) benign(0.038) TCGA-AA-3947-01 6 88229310 88229310 A G RARS2 Missense_Mutation p.S410P 0.14 tolerated(0.07) benign(0.431) TCGA-AA-3947-01 6 89827549 89827549 C T SRSF12 Missense_Mutation p.A20T 0.41 tolerated(0.21) benign(0.009) TCGA-AA-3947-01 6 90392965 90392965 T G MDN1 Missense_Mutation p.E3996D 0.21 benign(0.256) TCGA-AA-3947-01 6 90504337 90504337 C T MDN1 Silent p.V171V 0.38 TCGA-AA-3947-01 6 90578312 90578312 A C CASP8AP2 RNA 0.34 TCGA-AA-3947-01 6 90578430 90578430 A - CASP8AP2 RNA 0.28 TCGA-AA-3947-01 6 96656705 96656705 A C FUT9 3'UTR 0.52 TCGA-AA-3947-01 6 96658701 96658701 A G FUT9 3'UTR 0.08 TCGA-AA-3947-01 6 97424037 97424037 G A KLHL32 Missense_Mutation p.C63Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 6 99853925 99853925 C A PNISR Missense_Mutation p.E328D 0.33 tolerated(0.06) benign(0.345) TCGA-AA-3947-01 6 99893708 99893708 T - USP45 Frame_Shift_Del p.N647Tfs*16 0.30 TCGA-AA-3947-01 7 100088680 100088680 C - NYAP1 Frame_Shift_Del p.R745Gfs*10 0.28 TCGA-AA-3947-01 7 100160278 100160278 G A AGFG2 Missense_Mutation p.G354S 0.45 tolerated(0.96) benign(0.012) TCGA-AA-3947-01 7 100202722 100202722 T - PCOLCE Frame_Shift_Del p.C159Afs*12 0.15 TCGA-AA-3947-01 7 100212577 100212577 C T MOSPD3 Missense_Mutation p.P200L 0.35 tolerated(0.49) benign(0) TCGA-AA-3947-01 7 100282512 100282512 C T GIGYF1 Silent p.A432A 0.41 TCGA-AA-3947-01 7 100349548 100349548 T C ZAN Missense_Mutation p.I607T 0.04 benign(0.031) TCGA-AA-3947-01 7 100457600 100457600 G A SLC12A9 Silent p.A357A 0.41 TCGA-AA-3947-01 7 100482840 100482840 C T SRRT Missense_Mutation p.A389V 0.53 tolerated(0.3) benign(0.007) TCGA-AA-3947-01 7 100677806 100677806 C T MUC17 Missense_Mutation p.P1037S 0.19 possibly_damaging(0.641) TCGA-AA-3947-01 7 100677819 100677819 G A MUC17 Missense_Mutation p.S1041N 0.16 benign(0.213) TCGA-AA-3947-01 7 100800029 100800029 G T AP1S1 Missense_Mutation p.R53M 0.36 deleterious(0.01) benign(0.406) TCGA-AA-3947-01 7 100802405 100802405 G - AP1S1 Frame_Shift_Del p.D122Mfs*11 0.35 TCGA-AA-3947-01 7 100855148 100855148 C A PLOD3 Missense_Mutation p.R404L 0.40 deleterious(0.01) benign(0.004) TCGA-AA-3947-01 7 101842125 101842125 G A CUX1 Silent p.P657P 0.29 TCGA-AA-3947-01 7 101845055 101845055 C T CUX1 Silent p.S837S 0.36 TCGA-AA-3947-01 7 102182058 102182058 G A RP11-514P8.7 Missense_Mutation p.A268V 0.22 tolerated_low_confidence(0.12) probably_damaging(0.99) TCGA-AA-3947-01 7 1026290 1026290 C A CYP2W1 Missense_Mutation p.L226M 0.36 deleterious(0.03) possibly_damaging(0.517) TCGA-AA-3947-01 7 103061308 103061308 T - SLC26A5 Frame_Shift_Del p.I57* 0.29 TCGA-AA-3947-01 7 103276025 103276025 T C RELN Missense_Mutation p.Q771R 0.15 deleterious(0.04) probably_damaging(0.978) TCGA-AA-3947-01 7 104749513 104749513 G A KMT2E Missense_Mutation p.G1198D 0.34 tolerated_low_confidence(0.07) benign(0) TCGA-AA-3947-01 7 106508334 106508334 T C PIK3CG Missense_Mutation p.Y110H 0.47 tolerated(0.07) possibly_damaging(0.463) TCGA-AA-3947-01 7 106797673 106797673 C T PRKAR2B Nonsense_Mutation p.R343* 0.37 TCGA-AA-3947-01 7 111977817 111977817 C A ZNF277 Missense_Mutation p.S301Y 0.33 tolerated(0.51) possibly_damaging(0.653) TCGA-AA-3947-01 7 112424215 112424216 - T TMEM168 Frame_Shift_Ins p.N222Kfs*15 0.11 TCGA-AA-3947-01 7 114292323 114292323 T C FOXP2 Missense_Mutation p.V412A 0.20 deleterious(0) unknown(0) TCGA-AA-3947-01 7 117292906 117292906 T - CFTR Frame_Shift_Del p.S1297Lfs*31 0.20 TCGA-AA-3947-01 7 117431903 117431903 T C CTTNBP2 Silent p.R449R 0.34 TCGA-AA-3947-01 7 120428637 120428637 C T TSPAN12 3'UTR 0.10 TCGA-AA-3947-01 7 121726174 121726174 A - AASS Frame_Shift_Del p.P693Qfs*3 0.30 TCGA-AA-3947-01 7 121943771 121943771 T - FEZF1 Frame_Shift_Del p.I241Sfs*35 0.19 TCGA-AA-3947-01 7 127222809 127222811 CTC - GCC1 In_Frame_Del p.E529del 0.21 TCGA-AA-3947-01 7 127669602 127669602 A G LRRC4 Silent p.I364I 0.12 TCGA-AA-3947-01 7 127973347 127973347 A G RBM28 Missense_Mutation p.I339T 0.37 deleterious(0) possibly_damaging(0.609) TCGA-AA-3947-01 7 127991214 127991214 C T PRRT4 Missense_Mutation p.S799N 0.31 deleterious(0.03) probably_damaging(0.99) TCGA-AA-3947-01 7 127999441 127999441 C T PRRT4 Missense_Mutation p.S202N 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3947-01 7 128098120 128098120 C A HILPDA 3'UTR 0.06 TCGA-AA-3947-01 7 128142024 128142024 A T METTL2B 3'UTR 0.27 TCGA-AA-3947-01 7 128864864 128864864 G C AHCYL2 5'UTR 0.15 TCGA-AA-3947-01 7 129664189 129664189 G A ZC3HC1 Missense_Mutation p.P312S 0.37 tolerated(0.28) benign(0.005) TCGA-AA-3947-01 7 131883382 131883382 G A PLXNA4 Missense_Mutation p.T867I 0.39 deleterious(0.03) possibly_damaging(0.464) TCGA-AA-3947-01 7 134576426 134576426 T C CALD1 Intron 0.07 TCGA-AA-3947-01 7 134870950 134870950 T C WDR91 Missense_Mutation p.M733V 0.40 deleterious(0.01) benign(0.208) TCGA-AA-3947-01 7 134882846 134882846 C T WDR91 Missense_Mutation p.G317R 0.32 tolerated(0.43) possibly_damaging(0.859) TCGA-AA-3947-01 7 135323372 135323372 C G NUP205 Missense_Mutation p.A1778G 0.30 tolerated(0.37) benign(0.021) TCGA-AA-3947-01 7 135614261 135614261 C T MTPN 3'UTR 0.08 TCGA-AA-3947-01 7 138602326 138602326 C T KIAA1549 Silent p.Q682Q 0.39 TCGA-AA-3947-01 7 138968608 138968608 C - UBN2 Frame_Shift_Del p.S988Hfs*27 0.15 TCGA-AA-3947-01 7 139316026 139316026 C T HIPK2 Missense_Mutation p.R411Q 0.34 deleterious(0) probably_damaging(0.976) TCGA-AA-3947-01 7 140111746 140111746 G A RAB19 Missense_Mutation p.A92T 0.14 deleterious(0) probably_damaging(0.955) TCGA-AA-3947-01 7 140159573 140159573 C A MKRN1 Nonsense_Mutation p.G160* 0.20 TCGA-AA-3947-01 7 140221681 140221681 C T DENND2A Missense_Mutation p.R962Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-AA-3947-01 7 142561448 142561448 G - EPHB6 Frame_Shift_Del 0.33 TCGA-AA-3947-01 7 142651288 142651288 T G KEL Missense_Mutation p.T303P 0.23 deleterious(0) probably_damaging(0.951) TCGA-AA-3947-01 7 143747769 143747769 T A OR2A5 Missense_Mutation p.I92N 0.10 deleterious(0) probably_damaging(0.968) TCGA-AA-3947-01 7 144015515 144015515 A G OR2A1 Missense_Mutation p.T100A 0.15 deleterious(0.02) benign(0.019) TCGA-AA-3947-01 7 144096190 144096190 G - NOBOX Frame_Shift_Del p.P441Hfs*25 0.28 TCGA-AA-3947-01 7 148311209 148311209 G A C7orf33 Missense_Mutation p.A94T 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.682) TCGA-AA-3947-01 7 148892815 148892815 G T ZNF282 Missense_Mutation p.G45V 0.45 tolerated_low_confidence(0.23) benign(0.004) TCGA-AA-3947-01 7 148921312 148921312 G A ZNF282 Missense_Mutation p.R530H 0.35 tolerated(0.17) probably_damaging(0.98) TCGA-AA-3947-01 7 149483303 149483303 G T SSPO RNA 0.31 TCGA-AA-3947-01 7 150174635 150174635 C T GIMAP8 Missense_Mutation p.R589C 0.15 tolerated(0.17) benign(0.381) TCGA-AA-3947-01 7 150269720 150269720 G A GIMAP4 Missense_Mutation p.A188T 0.20 tolerated(0.21) possibly_damaging(0.593) TCGA-AA-3947-01 7 150558259 150558259 C - AOC1 Frame_Shift_Del p.P741Lfs*54 0.12 TCGA-AA-3947-01 7 150648922 150648922 A C KCNH2 Missense_Mutation p.L520R 0.43 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 7 150707289 150707289 T A NOS3 Missense_Mutation p.S867T 0.37 tolerated(1) benign(0.005) TCGA-AA-3947-01 7 150737669 150737669 G A ABCB8 Missense_Mutation p.V446I 0.34 tolerated(1) benign(0) TCGA-AA-3947-01 7 150778649 150778649 A G TMUB1 Missense_Mutation p.M243T 0.17 tolerated(0.08) possibly_damaging(0.885) TCGA-AA-3947-01 7 150783997 150783997 C - AGAP3 Frame_Shift_Del p.Q59Sfs*31 0.23 TCGA-AA-3947-01 7 150814238 150814238 G A AGAP3 Silent p.T149T 0.10 TCGA-AA-3947-01 7 150915851 150915851 C T ABCF2 Missense_Mutation p.V376M 0.05 tolerated(0.11) benign(0.223) TCGA-AA-3947-01 7 150932152 150932153 AG - CHPF2 Frame_Shift_Del p.E95Afs*5 0.28 TCGA-AA-3947-01 7 151046311 151046311 A G NUB1 Silent p.P114P 0.37 TCGA-AA-3947-01 7 151684323 151684324 GG - GALNTL5 Frame_Shift_Del p.G206Afs*25 0.30 TCGA-AA-3947-01 7 151962165 151962165 G T KMT2C Missense_Mutation p.A381E 0.07 probably_damaging(0.999) TCGA-AA-3947-01 7 1887112 1887112 G A AC110781.3 Silent p.Q119Q 0.08 TCGA-AA-3947-01 7 19157134 19157134 G C TWIST1 5'UTR 0.41 TCGA-AA-3947-01 7 19763926 19763926 G T TMEM196 Intron 0.30 TCGA-AA-3947-01 7 20418758 20418758 C T ITGB8 Missense_Mutation p.S158L 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 7 20418791 20418791 T G ITGB8 Missense_Mutation p.V169G 0.21 deleterious(0) probably_damaging(0.953) TCGA-AA-3947-01 7 23017931 23017931 C T FAM126A Missense_Mutation p.S97N 0.21 tolerated(0.06) benign(0.366) TCGA-AA-3947-01 7 23163401 23163401 G A KLHL7 Silent p.T42T 0.32 TCGA-AA-3947-01 7 24681355 24681355 T C MPP6 Silent p.D46D 0.21 TCGA-AA-3947-01 7 25218831 25218831 G - C7orf31 Frame_Shift_Del p.L33Sfs*17 0.08 TCGA-AA-3947-01 7 26217573 26217573 T C NFE2L3 Missense_Mutation p.V194A 0.38 tolerated(0.11) benign(0.079) TCGA-AA-3947-01 7 27134329 27134329 C T HOXA1 Silent p.K246K 0.41 TCGA-AA-3947-01 7 27204567 27204567 G T HOXA9 Silent p.P170P 0.10 TCGA-AA-3947-01 7 27285564 27285564 G T EVX1 Silent p.P248P 0.19 TCGA-AA-3947-01 7 2748296 2748296 C A AMZ1 Missense_Mutation p.L183M 0.24 deleterious(0) probably_damaging(0.953) TCGA-AA-3947-01 7 2946240 2946240 G A CARD11 3'UTR 0.21 TCGA-AA-3947-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.34 TCGA-AA-3947-01 7 30197130 30197130 C T MTURN Missense_Mutation p.A121V 0.14 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-AA-3947-01 7 30491974 30491974 G T NOD1 Silent p.S353S 0.48 TCGA-AA-3947-01 7 32209568 32209568 C T PDE1C Missense_Mutation p.R46Q 0.35 tolerated_low_confidence(0.08) probably_damaging(0.978) TCGA-AA-3947-01 7 42004063 42004063 G A GLI3 Silent p.S1536S 0.36 TCGA-AA-3947-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.26 TCGA-AA-3947-01 7 4277392 4277392 A G SDK1 Missense_Mutation p.K2036E 0.42 deleterious(0.03) benign(0.097) TCGA-AA-3947-01 7 43663332 43663332 C T STK17A Silent p.V255V 0.40 TCGA-AA-3947-01 7 44099049 44099049 G A DBNL Splice_Site p.X320_splice 0.42 TCGA-AA-3947-01 7 44104599 44104599 C T PGAM2 Missense_Mutation p.A143T 0.50 deleterious(0.05) benign(0.001) TCGA-AA-3947-01 7 44147506 44147506 G A AEBP1 Missense_Mutation p.A280T 0.34 tolerated_low_confidence(0.51) benign(0.001) TCGA-AA-3947-01 7 44282198 44282198 C T CAMK2B Silent p.Q219Q 0.36 TCGA-AA-3947-01 7 44578622 44578622 C T NPC1L1 Silent p.S458S 0.31 TCGA-AA-3947-01 7 44746932 44746932 G A OGDH Missense_Mutation p.R914Q 0.46 tolerated(0.11) benign(0.007) TCGA-AA-3947-01 7 44869715 44869715 G A H2AFV 3'Flank 0.08 TCGA-AA-3947-01 7 47474950 47474950 C T TNS3 Missense_Mutation p.C85Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 7 4798841 4798841 C T FOXK1 Silent p.S468S 0.26 TCGA-AA-3947-01 7 4800857 4800857 G A FOXK1 Missense_Mutation p.R620Q 0.59 tolerated(0.1) benign(0.079) TCGA-AA-3947-01 7 4820879 4820879 C T AP5Z1 Missense_Mutation p.P39S 0.27 tolerated(0.33) benign(0.086) TCGA-AA-3947-01 7 4874462 4874462 C T RADIL Missense_Mutation p.A398T 0.30 tolerated(0.64) benign(0.003) TCGA-AA-3947-01 7 4899798 4899798 C T PAPOLB Silent p.L547L 0.24 TCGA-AA-3947-01 7 50198672 50198672 C T C7orf72 Silent p.L408L 0.31 TCGA-AA-3947-01 7 50444360 50444360 G T IKZF1 Missense_Mutation p.R97M 0.43 tolerated(0.1) possibly_damaging(0.451) TCGA-AA-3947-01 7 51094273 51094273 G A COBL Silent p.R1158R 0.09 TCGA-AA-3947-01 7 51096641 51096641 G A COBL Nonsense_Mutation p.R718* 0.05 TCGA-AA-3947-01 7 5352593 5352593 G T TNRC18 Silent p.S2643S 0.38 TCGA-AA-3947-01 7 5541225 5541225 C T FBXL18 Silent p.P225P 0.10 TCGA-AA-3947-01 7 5541433 5541433 C T FBXL18 Missense_Mutation p.G156D 0.48 tolerated(0.06) probably_damaging(1) TCGA-AA-3947-01 7 56147290 56147290 G A SUMF2 Missense_Mutation p.R268H 0.19 deleterious_low_confidence(0) benign(0.265) TCGA-AA-3947-01 7 56171984 56171984 C T CHCHD2 Missense_Mutation p.A79T 0.35 deleterious(0.02) probably_damaging(0.951) TCGA-AA-3947-01 7 6194545 6194551 CGCGCCC - USP42 Frame_Shift_Del p.A1121Tfs*18 0.29 TCGA-AA-3947-01 7 6210575 6210575 C T CYTH3 Missense_Mutation p.M199I 0.30 tolerated(0.05) benign(0.129) TCGA-AA-3947-01 7 63981569 63981569 T C ZNF680 Silent p.E521E 0.44 TCGA-AA-3947-01 7 6449896 6449897 - C DAGLB Frame_Shift_Ins p.E562Gfs*56 0.23 TCGA-AA-3947-01 7 65154272 65154272 A G INTS4L2 Splice_Site 0.07 TCGA-AA-3947-01 7 66453306 66453306 C A SBDS 3'UTR 0.36 TCGA-AA-3947-01 7 70228209 70228209 T C AUTS2 Missense_Mutation p.S366P 0.36 tolerated(0.33) benign(0.439) TCGA-AA-3947-01 7 70254952 70254952 C A AUTS2 Missense_Mutation p.P917H 0.26 deleterious(0) possibly_damaging(0.652) TCGA-AA-3947-01 7 72880669 72880669 C T BAZ1B Missense_Mutation p.V977I 0.40 tolerated(0.74) benign(0.001) TCGA-AA-3947-01 7 72892669 72892669 C T BAZ1B Silent p.S374S 0.38 TCGA-AA-3947-01 7 73602130 73602130 T C EIF4H Splice_Site p.X83_splice 0.17 TCGA-AA-3947-01 7 73634320 73634320 C T LAT2 Missense_Mutation p.A70V 0.37 tolerated(0.43) benign(0.001) TCGA-AA-3947-01 7 74193734 74193734 C T NCF1 Missense_Mutation p.R121C 0.24 deleterious(0) probably_damaging(0.989) TCGA-AA-3947-01 7 74197314 74197314 C T NCF1 Missense_Mutation p.R162C 0.34 tolerated(0.09) probably_damaging(0.997) TCGA-AA-3947-01 7 75614451 75614451 C - POR Frame_Shift_Del p.I444Sfs*101 0.31 TCGA-AA-3947-01 7 75616898 75616898 C T POR 3'Flank 0.17 TCGA-AA-3947-01 7 76916213 76916213 C T CCDC146 Silent p.T749T 0.19 TCGA-AA-3947-01 7 77756653 77756653 G - MAGI2 Frame_Shift_Del p.P1095Rfs*80 0.29 TCGA-AA-3947-01 7 8124647 8124647 C T GLCCI1 Missense_Mutation p.A433V 0.09 tolerated(0.2) benign(0.435) TCGA-AA-3947-01 7 83036446 83036446 G A SEMA3E Silent p.H260H 0.37 TCGA-AA-3947-01 7 86541476 86541476 C T KIAA1324L Missense_Mutation p.S694N 0.08 tolerated(1) benign(0.002) TCGA-AA-3947-01 7 86544090 86544090 A G KIAA1324L Silent p.N560N 0.21 TCGA-AA-3947-01 7 87537298 87537299 AC - DBF4 Frame_Shift_Del p.Q616Vfs*9 0.25 TCGA-AA-3947-01 7 87762267 87762267 G A ADAM22 Splice_Site p.X359_splice 0.06 TCGA-AA-3947-01 7 89874766 89874766 G A C7orf63 Missense_Mutation p.A10T 0.33 tolerated_low_confidence(0.24) possibly_damaging(0.695) TCGA-AA-3947-01 7 90014332 90014332 T C GTPBP10 Missense_Mutation p.L343P 0.09 deleterious(0) probably_damaging(0.926) TCGA-AA-3947-01 7 91603085 91603085 A - AKAP9 Frame_Shift_Del p.K39Rfs*17 0.27 TCGA-AA-3947-01 7 91630438 91630438 G A AKAP9 Missense_Mutation p.E403K 0.08 possibly_damaging(0.803) TCGA-AA-3947-01 7 91630771 91630771 G A AKAP9 Missense_Mutation p.E514K 0.30 benign(0.354) TCGA-AA-3947-01 7 91691642 91691642 A - AKAP9 Frame_Shift_Del p.T1942Lfs*3 0.11 TCGA-AA-3947-01 7 92987813 92987813 T - CCDC132 3'UTR 0.13 TCGA-AA-3947-01 7 938486 938487 - C ADAP1 3'UTR 0.53 TCGA-AA-3947-01 7 95751190 95751190 G A SLC25A13 Missense_Mutation p.R572C 0.09 deleterious(0) possibly_damaging(0.881) TCGA-AA-3947-01 7 98567795 98567795 C T TRRAP Missense_Mutation p.L2518F 0.09 benign(0.055) TCGA-AA-3947-01 7 98782725 98782725 C T KPNA7 Missense_Mutation p.A321T 0.24 deleterious(0.02) probably_damaging(0.965) TCGA-AA-3947-01 7 98957171 98957171 C A ARPC1A Missense_Mutation p.H265N 0.24 deleterious(0) probably_damaging(0.944) TCGA-AA-3947-01 7 98957327 98957327 A G ARPC1A Missense_Mutation p.T317A 0.11 tolerated(0.26) benign(0.002) TCGA-AA-3947-01 7 99170244 99170244 C A ZNF655 Silent p.A206A 0.18 TCGA-AA-3947-01 7 99621873 99621873 G A ZKSCAN1 Missense_Mutation p.A175T 0.15 tolerated(0.62) benign(0) TCGA-AA-3947-01 7 99686655 99686655 C T COPS6 Silent p.T14T 0.46 TCGA-AA-3947-01 8 101715501 101715501 T - PABPC1 3'UTR 0.50 TCGA-AA-3947-01 8 102611326 102611326 G T GRHL2 Nonsense_Mutation p.E349* 0.07 TCGA-AA-3947-01 8 102631913 102631913 C G GRHL2 Silent p.V415V 0.26 TCGA-AA-3947-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.23 TCGA-AA-3947-01 8 10689194 10689194 G A SOX7 Silent p.C94C 0.07 TCGA-AA-3947-01 8 109094785 109094785 G A RSPO2 Missense_Mutation p.R28C 0.35 deleterious(0.01) possibly_damaging(0.648) TCGA-AA-3947-01 8 109247230 109247230 C T EIF3E Silent p.V156V 0.30 TCGA-AA-3947-01 8 110576764 110576764 C T EBAG9 Silent p.N206N 0.06 TCGA-AA-3947-01 8 11163823 11163823 T C MTMR9 Missense_Mutation p.L239P 0.38 tolerated(0.35) benign(0.008) TCGA-AA-3947-01 8 11167141 11167141 G A MTMR9 Silent p.L305L 0.10 TCGA-AA-3947-01 8 113702221 113702221 G A CSMD3 Silent p.G677G 0.15 TCGA-AA-3947-01 8 11406564 11406564 G A BLK Missense_Mutation p.V101I 0.40 tolerated(0.27) benign(0.003) TCGA-AA-3947-01 8 11407745 11407745 T G BLK Missense_Mutation p.L149R 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3947-01 8 116426763 116426763 G A TRPS1 Missense_Mutation p.R1125W 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3947-01 8 116427255 116427255 T C TRPS1 Missense_Mutation p.R961G 0.05 deleterious(0) probably_damaging(0.995) TCGA-AA-3947-01 8 11708389 11708389 A G CTSB Missense_Mutation p.C105R 0.48 deleterious(0) probably_damaging(0.939) TCGA-AA-3947-01 8 119936822 119936822 G A TNFRSF11B Nonsense_Mutation p.R333* 0.35 TCGA-AA-3947-01 8 12044263 12044263 G A FAM86B1 Missense_Mutation p.A107V 0.41 deleterious(0) possibly_damaging(0.84) TCGA-AA-3947-01 8 120844802 120844802 C T TAF2 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0) benign(0.107) TCGA-AA-3947-01 8 121322277 121322277 C T COL14A1 Silent p.G1477G 0.08 TCGA-AA-3947-01 8 12586485 12586485 C T LONRF1 Silent p.K645K 0.12 TCGA-AA-3947-01 8 125989320 125989320 A C ZNF572 Missense_Mutation p.K270N 0.28 deleterious(0) probably_damaging(0.988) TCGA-AA-3947-01 8 128429217 128429217 A G POU5F1B 3'UTR 0.08 TCGA-AA-3947-01 8 128429247 128429247 A C POU5F1B 3'UTR 0.05 TCGA-AA-3947-01 8 12881362 12881362 G A KIAA1456 3'UTR 0.38 TCGA-AA-3947-01 8 12882421 12882421 T A KIAA1456 3'UTR 0.09 TCGA-AA-3947-01 8 12957935 12957935 G A DLC1 Silent p.F637F 0.07 TCGA-AA-3947-01 8 132966148 132966148 C T EFR3A Missense_Mutation p.P191L 0.29 deleterious(0) possibly_damaging(0.786) TCGA-AA-3947-01 8 133141916 133141916 C T KCNQ3 Missense_Mutation p.A738T 0.22 tolerated(0.54) benign(0.002) TCGA-AA-3947-01 8 134042166 134042166 C T TG Silent p.R2379R 0.33 TCGA-AA-3947-01 8 139609159 139609159 T C COL22A1 Missense_Mutation p.K1474E 0.41 unknown(0) TCGA-AA-3947-01 8 141756920 141756920 A G PTK2 Missense_Mutation p.L486P 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 8 142170816 142170816 C T DENND3 Missense_Mutation p.R348W 0.45 deleterious(0.04) benign(0.117) TCGA-AA-3947-01 8 142451779 142451779 T C CTD-3064M3.7 3'Flank 0.34 TCGA-AA-3947-01 8 142483015 142483015 G A MROH5 3'UTR 0.17 TCGA-AA-3947-01 8 143425731 143425731 G A TSNARE1 Missense_Mutation p.A114V 0.41 tolerated_low_confidence(0.26) benign(0.001) TCGA-AA-3947-01 8 143694645 143694645 G A ARC Nonsense_Mutation p.Q330* 0.23 TCGA-AA-3947-01 8 143695268 143695268 C T ARC Missense_Mutation p.R122H 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-3947-01 8 143857017 143857017 G A LYNX1 Missense_Mutation p.R50C 0.39 deleterious(0.01) benign(0.296) TCGA-AA-3947-01 8 144621330 144621330 C T ZC3H3 Silent p.S69S 0.20 TCGA-AA-3947-01 8 144659493 144659493 G A NAPRT1 Missense_Mutation p.R172W 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 8 144810236 144810236 C T FAM83H Silent p.T465T 0.44 TCGA-AA-3947-01 8 144812718 144812718 T C FAM83H Missense_Mutation p.D12G 0.46 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 8 145000974 145000975 AG - PLEC Frame_Shift_Del p.L1478Afs*11 0.22 TCGA-AA-3947-01 8 145541223 145541223 C T DGAT1 Missense_Mutation p.R322H 0.42 deleterious(0) possibly_damaging(0.805) TCGA-AA-3947-01 8 145557166 145557166 G A SCRT1 Missense_Mutation p.T243M 0.46 deleterious(0) unknown(0) TCGA-AA-3947-01 8 145579292 145579292 A G FBXL6 Missense_Mutation p.S507P 0.42 deleterious(0) probably_damaging(0.914) TCGA-AA-3947-01 8 145626337 145626337 C T CPSF1 Missense_Mutation p.E174K 0.10 tolerated(0.14) possibly_damaging(0.788) TCGA-AA-3947-01 8 145649279 145649279 G A VPS28 Silent p.G231G 0.18 TCGA-AA-3947-01 8 145742551 145742551 C - RECQL4 Frame_Shift_Del p.H81Ifs*2 0.09 TCGA-AA-3947-01 8 145979182 145979182 C A ZNF251 Splice_Site p.X55_splice 0.44 TCGA-AA-3947-01 8 16026093 16026093 T A MSR1 Silent p.G168G 0.40 TCGA-AA-3947-01 8 17824674 17824674 C T PCM1 Missense_Mutation p.A1136V 0.34 tolerated(0.26) benign(0.003) TCGA-AA-3947-01 8 1952294 1952294 G A KBTBD11 3'UTR 0.11 TCGA-AA-3947-01 8 195706 195706 G A ZNF596 Missense_Mutation p.A287T 0.08 tolerated(0.07) benign(0.11) TCGA-AA-3947-01 8 196306 196306 T - ZNF596 Frame_Shift_Del p.F488Lfs*15 0.16 TCGA-AA-3947-01 8 2026940 2026940 C T MYOM2 Missense_Mutation p.A463V 0.44 tolerated(0.13) probably_damaging(0.951) TCGA-AA-3947-01 8 21953965 21953965 A C FAM160B2 Missense_Mutation p.E81A 0.36 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 8 22140573 22140573 C T PIWIL2 Missense_Mutation p.A151V 0.47 tolerated(0.51) benign(0) TCGA-AA-3947-01 8 22298929 22298929 G A PPP3CC Missense_Mutation p.G3R 0.39 tolerated_low_confidence(0.2) benign(0.001) TCGA-AA-3947-01 8 22429908 22429908 G C SORBS3 Missense_Mutation p.E635Q 0.40 deleterious(0.04) probably_damaging(0.922) TCGA-AA-3947-01 8 22548461 22548461 G A EGR3 Missense_Mutation p.T230I 0.08 deleterious(0) probably_damaging(0.998) TCGA-AA-3947-01 8 23058258 23058258 C A TNFRSF10A Missense_Mutation p.M215I 0.06 deleterious(0.02) benign(0.044) TCGA-AA-3947-01 8 24151680 24151680 G A ADAM28 Silent p.L6L 0.06 TCGA-AA-3947-01 8 24256522 24256522 A G ADAMDEC1 Missense_Mutation p.K300E 0.36 deleterious(0) possibly_damaging(0.874) TCGA-AA-3947-01 8 25167958 25167958 C A DOCK5 Missense_Mutation p.L410I 0.11 tolerated(0.66) benign(0.027) TCGA-AA-3947-01 8 26722444 26722444 T C ADRA1A Missense_Mutation p.T15A 0.35 deleterious(0.02) possibly_damaging(0.688) TCGA-AA-3947-01 8 27915781 27915781 T C NUGGC Silent p.A370A 0.28 TCGA-AA-3947-01 8 27925207 27925207 G T NUGGC Missense_Mutation p.L179M 0.41 tolerated(0.11) possibly_damaging(0.744) TCGA-AA-3947-01 8 28210809 28210809 G - ZNF395 Frame_Shift_Del p.H234Tfs*43 0.29 TCGA-AA-3947-01 8 28906577 28906577 C T HMBOX1 Intron 0.41 TCGA-AA-3947-01 8 2966246 2966251 GGGTGA CGGGGAGG CSMD1 Frame_Shift_Ins p.S2210Pfs*70 0.13 TCGA-AA-3947-01 8 29931478 29931478 C A TMEM66 Missense_Mutation p.C66F 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 8 30890110 30890110 T - PURG Frame_Shift_Del p.K63Nfs*12 0.29 TCGA-AA-3947-01 8 31497974 31497974 G A NRG1 Silent p.A11A 0.19 TCGA-AA-3947-01 8 36698090 36698090 C T KCNU1 Missense_Mutation p.A543V 0.28 deleterious(0.01) benign(0.253) TCGA-AA-3947-01 8 36766937 36766937 A G KCNU1 Missense_Mutation p.R739G 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 8 38034435 38034435 C A BAG4 Silent p.S16S 0.28 TCGA-AA-3947-01 8 38117622 38117622 G A DDHD2 Missense_Mutation p.D707N 0.35 deleterious(0) probably_damaging(0.928) TCGA-AA-3947-01 8 41801338 41801338 A G KAT6A Missense_Mutation p.L719S 0.06 benign(0.299) TCGA-AA-3947-01 8 48695138 48695138 G A PRKDC Nonsense_Mutation p.R3732* 0.23 TCGA-AA-3947-01 8 56922622 56922622 G T LYN Missense_Mutation p.D498Y 0.33 deleterious(0) probably_damaging(0.938) TCGA-AA-3947-01 8 59059301 59059301 G A FAM110B Missense_Mutation p.R171H 0.33 tolerated(0.16) benign(0.001) TCGA-AA-3947-01 8 61693715 61693715 G A CHD7 Missense_Mutation p.A608T 0.10 possibly_damaging(0.483) TCGA-AA-3947-01 8 61777637 61777637 A T CHD7 Silent p.G2713G 0.13 TCGA-AA-3947-01 8 62596743 62596744 TG - ASPH Frame_Shift_Del p.T36Kfs*40 0.27 TCGA-AA-3947-01 8 65494397 65494397 C T BHLHE22 Silent p.S350S 0.40 TCGA-AA-3947-01 8 6793381 6793381 G A DEFA4 3'UTR 0.47 TCGA-AA-3947-01 8 68334684 68334684 G A CPA6 3'UTR 0.14 TCGA-AA-3947-01 8 68864669 68864669 G A PREX2 Missense_Mutation p.A14T 0.18 tolerated(0.26) benign(0.01) TCGA-AA-3947-01 8 69002879 69002879 G A PREX2 Missense_Mutation p.V727I 0.40 deleterious(0) possibly_damaging(0.566) TCGA-AA-3947-01 8 72756320 72756320 G A MSC Missense_Mutation p.R32C 0.31 deleterious_low_confidence(0.02) benign(0) TCGA-AA-3947-01 8 72964818 72964818 C T RP11-383H13.1 3'UTR 0.09 TCGA-AA-3947-01 8 74903781 74903781 C G LY96 Missense_Mutation p.T35S 0.08 tolerated(0.36) benign(0.059) TCGA-AA-3947-01 8 75227412 75227412 C T JPH1 Missense_Mutation p.A275T 0.35 deleterious(0) probably_damaging(0.991) TCGA-AA-3947-01 8 77763477 77763477 A - ZFHX4 Frame_Shift_Del p.K1442Nfs*10 0.15 TCGA-AA-3947-01 8 77765696 77765696 C T ZFHX4 Missense_Mutation p.T2180M 0.41 probably_damaging(0.999) TCGA-AA-3947-01 8 77768169 77768169 C T ZFHX4 Silent p.G3004G 0.08 TCGA-AA-3947-01 8 82588515 82588516 - T IMPA1 Splice_Site p.X160_splice 0.17 TCGA-AA-3947-01 8 82606314 82606314 T - SLC10A5 Frame_Shift_Del p.A299Qfs*4 0.18 TCGA-AA-3947-01 8 86121614 86121614 C T E2F5 Nonsense_Mutation p.Q285* 0.28 TCGA-AA-3947-01 8 8749846 8749846 C T MFHAS1 Silent p.T241T 0.41 TCGA-AA-3947-01 8 87590976 87590976 C T CNGB3 Missense_Mutation p.G682S 0.20 tolerated(0.37) benign(0.013) TCGA-AA-3947-01 8 88884095 88884095 T C DCAF4L2 3'UTR 0.47 TCGA-AA-3947-01 8 92090840 92090840 T C OTUD6B Missense_Mutation p.V221A 0.38 tolerated(0.4) benign(0.001) TCGA-AA-3947-01 8 92212945 92212945 A - LRRC69 Frame_Shift_Del p.T288Hfs*10 0.29 TCGA-AA-3947-01 8 95885679 95885679 G A INTS8 Missense_Mutation p.V871M 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 8 95942798 95942798 C T TP53INP1 Missense_Mutation p.R211H 0.06 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 8 96168496 96168496 A C PLEKHF2 3'UTR 0.08 TCGA-AA-3947-01 8 97172937 97172937 C T GDF6 5'UTR 0.08 TCGA-AA-3947-01 8 97274282 97274282 T C PTDSS1 Missense_Mutation p.V5A 0.41 tolerated_low_confidence(0.92) benign(0) TCGA-AA-3947-01 8 98828290 98828290 G A LAPTM4B Missense_Mutation p.R188H 0.09 tolerated(0.77) benign(0.011) TCGA-AA-3947-01 8 99118544 99118544 T - HRSP12 Frame_Shift_Del p.N61Tfs*6 0.25 TCGA-AA-3947-01 8 99718816 99718816 A G STK3 Missense_Mutation p.M216T 0.12 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 9 100616428 100616428 G A FOXE1 Missense_Mutation p.G78S 0.47 deleterious(0) benign(0.1) TCGA-AA-3947-01 9 100617872 100617872 C A FOXE1 3'UTR 0.50 TCGA-AA-3947-01 9 101056174 101056174 C A GABBR2 Missense_Mutation p.K851N 0.37 deleterious_low_confidence(0.02) benign(0.444) TCGA-AA-3947-01 9 101065617 101065617 G A GABBR2 Missense_Mutation p.T773M 0.38 tolerated(0.12) possibly_damaging(0.719) TCGA-AA-3947-01 9 101810282 101810282 G A COL15A1 Silent p.Q931Q 0.36 TCGA-AA-3947-01 9 103062934 103062935 - A INVS Frame_Shift_Ins p.N1061Kfs*20 0.24 TCGA-AA-3947-01 9 103204414 103204414 G A MSANTD3 Missense_Mutation p.R65Q 0.38 deleterious(0.01) possibly_damaging(0.902) TCGA-AA-3947-01 9 104312951 104312951 T C RNF20 Missense_Mutation p.S386P 0.40 deleterious(0) benign(0.307) TCGA-AA-3947-01 9 107380191 107380191 C T OR13C9 Missense_Mutation p.V99M 0.42 tolerated(0.06) benign(0.046) TCGA-AA-3947-01 9 107589314 107589314 C - ABCA1 Frame_Shift_Del p.G751Afs*77 0.09 TCGA-AA-3947-01 9 112705689 112705689 G A PALM2 Missense_Mutation p.C407Y 0.25 deleterious(0) probably_damaging(0.939) TCGA-AA-3947-01 9 113233653 113233653 G A SVEP1 Missense_Mutation p.R997C 0.07 probably_damaging(1) TCGA-AA-3947-01 9 114355220 114355220 C G PTGR1 Silent p.G65G 0.06 TCGA-AA-3947-01 9 114677012 114677012 T A UGCG Missense_Mutation p.L76M 0.31 tolerated(0.71) benign(0.325) TCGA-AA-3947-01 9 115421591 115421591 G A KIAA1958 Missense_Mutation p.V465I 0.47 tolerated(0.07) possibly_damaging(0.75) TCGA-AA-3947-01 9 115580071 115580071 A T SNX30 Missense_Mutation p.E145D 0.05 tolerated(0.27) benign(0.002) TCGA-AA-3947-01 9 116299157 116299157 G A RGS3 Missense_Mutation p.A666T 0.31 tolerated(0.42) benign(0.016) TCGA-AA-3947-01 9 117014872 117014872 G T COL27A1 Splice_Site p.X1012_splice 0.35 TCGA-AA-3947-01 9 117103819 117103819 G A AKNA Missense_Mutation p.A1354V 0.19 deleterious(0.01) possibly_damaging(0.743) TCGA-AA-3947-01 9 117246 117246 A G FOXD4 Missense_Mutation p.F292L 0.27 tolerated(1) benign(0.001) TCGA-AA-3947-01 9 117788813 117788813 C A TNC Missense_Mutation p.G2111C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 9 119462265 119462268 AGAG - TRIM32 3'UTR 0.18 TCGA-AA-3947-01 9 124989255 124989255 C T LHX6 Missense_Mutation p.A71T 0.13 tolerated(0.17) benign(0.004) TCGA-AA-3947-01 9 125391333 125391333 C T OR1B1 Missense_Mutation p.R161H 0.34 tolerated(1) benign(0) TCGA-AA-3947-01 9 125887900 125887900 A C STRBP Silent p.P665P 0.22 TCGA-AA-3947-01 9 126212988 126212988 T - DENND1A Frame_Shift_Del p.N447Tfs*3 0.19 TCGA-AA-3947-01 9 126214594 126214594 C A DENND1A Missense_Mutation p.K420N 0.30 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 9 126777502 126777502 C T LHX2 Missense_Mutation p.T142M 0.09 deleterious(0.02) probably_damaging(0.96) TCGA-AA-3947-01 9 12698609 12698609 C A TYRP1 Silent p.V289V 0.07 TCGA-AA-3947-01 9 127549424 127549424 C T OLFML2A Silent p.R87R 0.09 TCGA-AA-3947-01 9 127549505 127549505 C T OLFML2A Silent p.P114P 0.38 TCGA-AA-3947-01 9 128434744 128434744 T C MAPKAP1 Missense_Mutation p.D37G 0.16 deleterious(0.02) possibly_damaging(0.796) TCGA-AA-3947-01 9 129455497 129455497 C T LMX1B Silent p.D212D 0.43 TCGA-AA-3947-01 9 129599806 129599806 A G ZBTB43 3'UTR 0.39 TCGA-AA-3947-01 9 130524584 130524584 C - SH2D3C Intron 0.34 TCGA-AA-3947-01 9 130587213 130587213 T - ENG Frame_Shift_Del p.N286Tfs*73 0.25 TCGA-AA-3947-01 9 130710482 130710482 T C FAM102A Missense_Mutation p.I162V 0.38 tolerated(0.35) benign(0.003) TCGA-AA-3947-01 9 130911775 130911775 C A LCN2 5'UTR 0.56 TCGA-AA-3947-01 9 131012470 131012470 C A DNM1 Nonsense_Mutation p.S718* 0.39 TCGA-AA-3947-01 9 131084010 131084010 C A TRUB2 Splice_Site p.X37_splice 0.30 TCGA-AA-3947-01 9 131286114 131286114 G T GLE1 Missense_Mutation p.A296S 0.12 tolerated(0.25) benign(0.004) TCGA-AA-3947-01 9 131598077 131598077 T C CCBL1 Missense_Mutation p.H279R 0.12 tolerated(0.06) benign(0.308) TCGA-AA-3947-01 9 131862879 131862879 C T CRAT Missense_Mutation p.V299M 0.14 tolerated(0.12) benign(0.001) TCGA-AA-3947-01 9 132572445 132572445 C T TOR1B 3'UTR 0.45 TCGA-AA-3947-01 9 132591450 132591450 C A C9orf78 Intron 0.39 TCGA-AA-3947-01 9 132637176 132637176 G A USP20 Missense_Mutation p.V664I 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 9 132740779 132740779 G A FNBP1 Missense_Mutation p.R104C 0.06 deleterious(0) possibly_damaging(0.796) TCGA-AA-3947-01 9 132816216 132816216 C T GPR107 Missense_Mutation p.A2V 0.19 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AA-3947-01 9 133755462 133755462 G A ABL1 Silent p.Q496Q 0.16 TCGA-AA-3947-01 9 135458256 135458256 G - BARHL1 Frame_Shift_Del p.D26Tfs*13 0.30 TCGA-AA-3947-01 9 135937376 135937376 G A CEL 5'UTR 0.05 TCGA-AA-3947-01 9 136279705 136279705 G A REXO4 Intron 0.28 TCGA-AA-3947-01 9 136302016 136302016 G A ADAMTS13 Missense_Mutation p.R459H 0.08 tolerated(0.68) benign(0.001) TCGA-AA-3947-01 9 136523586 136523586 C T DBH 3'UTR 0.43 TCGA-AA-3947-01 9 136531966 136531966 G T SARDH Missense_Mutation p.A841D 0.22 deleterious(0) probably_damaging(0.985) TCGA-AA-3947-01 9 136905275 136905277 CTT - BRD3 In_Frame_Del p.K508del 0.09 TCGA-AA-3947-01 9 137687112 137687112 C T COL5A1 Missense_Mutation p.P917L 0.33 unknown(0) TCGA-AA-3947-01 9 137774428 137774428 C T FCN2 Missense_Mutation p.P53S 0.22 deleterious(0.02) probably_damaging(0.941) TCGA-AA-3947-01 9 137777694 137777694 G - FCN2 Frame_Shift_Del p.E172Sfs*12 0.23 TCGA-AA-3947-01 9 137979866 137979866 G A OLFM1 Intron 0.53 TCGA-AA-3947-01 9 138376561 138376561 G T PPP1R26 Missense_Mutation p.A69S 0.38 tolerated(0.82) benign(0.103) TCGA-AA-3947-01 9 138377348 138377348 C T PPP1R26 Missense_Mutation p.A331V 0.37 tolerated(0.1) benign(0.031) TCGA-AA-3947-01 9 138378381 138378381 C T PPP1R26 Silent p.D675D 0.40 TCGA-AA-3947-01 9 138379356 138379356 C A PPP1R26 Silent p.G1000G 0.37 TCGA-AA-3947-01 9 139089591 139089591 T C LHX3 Splice_Site p.X264_splice 0.33 TCGA-AA-3947-01 9 139273634 139273634 G A SNAPC4 Missense_Mutation p.A882V 0.29 tolerated(0.16) possibly_damaging(0.672) TCGA-AA-3947-01 9 139351946 139351946 G T SEC16A Missense_Mutation p.L1834M 0.43 deleterious(0) probably_damaging(0.921) TCGA-AA-3947-01 9 139755070 139755070 G T MAMDC4 3'UTR 0.17 TCGA-AA-3947-01 9 139904669 139904669 C - ABCA2 Frame_Shift_Del p.G2110Afs*11 0.40 TCGA-AA-3947-01 9 140086955 140086955 C T TPRN Silent p.T638T 0.41 TCGA-AA-3947-01 9 140139555 140139555 C T FAM166A Missense_Mutation p.R213H 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-AA-3947-01 9 140707861 140707861 G A EHMT1 Missense_Mutation p.R1020H 0.25 tolerated(0.06) possibly_damaging(0.628) TCGA-AA-3947-01 9 140772614 140772614 G A CACNA1B Missense_Mutation p.V77I 0.19 tolerated(1) benign(0.043) TCGA-AA-3947-01 9 140918202 140918202 G A CACNA1B Missense_Mutation p.E1003K 0.06 tolerated(0.41) benign(0.057) TCGA-AA-3947-01 9 18675874 18675874 A G ADAMTSL1 Missense_Mutation p.M369V 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-AA-3947-01 9 18777537 18777537 C T ADAMTSL1 Silent p.L1104L 0.33 TCGA-AA-3947-01 9 19786464 19786464 G A SLC24A2 Missense_Mutation p.A134V 0.37 tolerated(0.09) benign(0.326) TCGA-AA-3947-01 9 21187462 21187462 G A IFNA4 Silent p.G23G 0.17 TCGA-AA-3947-01 9 23692319 23692319 T C ELAVL2 3'UTR 0.27 TCGA-AA-3947-01 9 2639950 2639950 A G VLDLR Silent p.E98E 0.18 TCGA-AA-3947-01 9 26887366 26887366 C T CAAP1 Missense_Mutation p.C150Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 9 32467873 32467873 T C DDX58 Missense_Mutation p.H691R 0.07 tolerated(0.08) benign(0.026) TCGA-AA-3947-01 9 32632015 32632015 C T TAF1L Missense_Mutation p.R1188H 0.07 deleterious(0) possibly_damaging(0.847) TCGA-AA-3947-01 9 32632782 32632782 T G TAF1L Missense_Mutation p.E932D 0.07 tolerated(0.5) benign(0.009) TCGA-AA-3947-01 9 33385862 33385862 C G AQP7 Silent p.A176A 0.23 TCGA-AA-3947-01 9 33473787 33473787 C A NOL6 Missense_Mutation p.E18D 0.19 deleterious(0.04) benign(0.201) TCGA-AA-3947-01 9 33675310 33675310 C G PTENP1 RNA 0.18 TCGA-AA-3947-01 9 33675326 33675326 T C PTENP1 RNA 0.28 TCGA-AA-3947-01 9 34611094 34611094 G A RPP25L Missense_Mutation p.A67V 0.29 deleterious(0) possibly_damaging(0.824) TCGA-AA-3947-01 9 34655655 34655655 A G IL11RA Missense_Mutation p.T52A 0.10 tolerated(0.68) benign(0.001) TCGA-AA-3947-01 9 35106592 35106592 G - FAM214B Frame_Shift_Del p.S335Vfs*77 0.27 TCGA-AA-3947-01 9 35710672 35710672 G A TLN1 Silent p.G1404G 0.09 TCGA-AA-3947-01 9 35717759 35717759 C A TLN1 Missense_Mutation p.A674S 0.43 deleterious(0.04) possibly_damaging(0.56) TCGA-AA-3947-01 9 35805897 35805897 C T NPR2 Silent p.D706D 0.37 TCGA-AA-3947-01 9 37516059 37516059 C T FBXO10 Silent p.S846S 0.44 TCGA-AA-3947-01 9 37740912 37740912 G A FRMPD1 Intron 0.29 TCGA-AA-3947-01 9 37746782 37746782 A - FRMPD1 3'UTR 0.25 TCGA-AA-3947-01 9 37763636 37763636 C A TRMT10B Silent p.P102P 0.40 TCGA-AA-3947-01 9 37887696 37887697 - C SLC25A51 Frame_Shift_Ins p.I285Hfs*7 0.25 TCGA-AA-3947-01 9 39099958 39099959 - C CNTNAP3 Frame_Shift_Ins p.V982Gfs*4 0.33 TCGA-AA-3947-01 9 4561472 4561472 G A SLC1A1 Missense_Mutation p.V86I 0.07 tolerated(0.08) benign(0.125) TCGA-AA-3947-01 9 5054832 5054832 G A JAK2 Missense_Mutation p.G295E 0.09 deleterious(0.01) probably_damaging(1) TCGA-AA-3947-01 9 71628409 71628409 G A PRKACG Silent p.C200C 0.11 TCGA-AA-3947-01 9 74319554 74319554 G A TMEM2 Missense_Mutation p.P1051S 0.08 tolerated(0.09) benign(0.032) TCGA-AA-3947-01 9 78686659 78686659 G A PCSK5 Missense_Mutation p.G247R 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 9 78749068 78749068 A G PCSK5 Missense_Mutation p.T418A 0.26 deleterious(0.04) probably_damaging(0.993) TCGA-AA-3947-01 9 79119512 79119512 G - GCNT1 3'UTR 0.11 TCGA-AA-3947-01 9 79952283 79952283 A - VPS13A Frame_Shift_Del p.N2071Tfs*18 0.25 TCGA-AA-3947-01 9 80262674 80262676 CTT - GNA14 In_Frame_Del p.K12del 0.39 TCGA-AA-3947-01 9 8501056 8501056 G A PTPRD Missense_Mutation p.P609L 0.27 deleterious(0.01) unknown(0) TCGA-AA-3947-01 9 8504274 8504274 T G PTPRD Missense_Mutation p.R603S 0.22 tolerated(0.09) probably_damaging(0.979) TCGA-AA-3947-01 9 86530556 86530556 A G KIF27 5'UTR 0.33 TCGA-AA-3947-01 9 86587032 86587032 T C HNRNPK Missense_Mutation p.T240A 0.06 tolerated(0.19) benign(0.358) TCGA-AA-3947-01 9 86618077 86618077 G T RMI1 3'UTR 0.26 TCGA-AA-3947-01 9 88916294 88916294 T - ZCCHC6 Frame_Shift_Del p.K1439Nfs*10 0.11 TCGA-AA-3947-01 9 88919811 88919811 A G ZCCHC6 Missense_Mutation p.I1313T 0.08 tolerated(1) benign(0.001) TCGA-AA-3947-01 9 90321475 90321475 C T DAPK1 Silent p.G1163G 0.18 TCGA-AA-3947-01 9 90321664 90321664 G A DAPK1 Silent p.T1226T 0.11 TCGA-AA-3947-01 9 90387871 90387871 G T CTSL3P RNA 0.50 TCGA-AA-3947-01 9 91609148 91609148 C - C9orf47 3'UTR 0.23 TCGA-AA-3947-01 9 91617468 91617468 A C S1PR3 3'UTR 0.39 TCGA-AA-3947-01 9 94487074 94487074 G A ROR2 Missense_Mutation p.R568C 0.10 deleterious(0) probably_damaging(0.992) TCGA-AA-3947-01 9 96324491 96324491 C A FAM120A Missense_Mutation p.R984S 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3947-01 9 96439021 96439021 C T PHF2 Missense_Mutation p.P993L 0.28 tolerated(0.08) unknown(0) TCGA-AA-3947-01 9 97767846 97767846 A C C9orf3 Missense_Mutation p.N688T 0.06 deleterious(0) possibly_damaging(0.672) TCGA-AA-3947-01 9 97823033 97823033 A G C9orf3 Missense_Mutation p.S725G 0.10 tolerated(0.06) benign(0.297) TCGA-AA-3947-01 9 98231357 98231357 T C PTCH1 Silent p.P642P 0.42 TCGA-AA-3947-01 9 99581115 99581115 G T ZNF782 Missense_Mutation p.P397H 0.36 tolerated(0.51) benign(0) TCGA-AA-3947-01 X 100105207 100105207 G A NOX1 Nonsense_Mutation p.R356* 0.25 TCGA-AA-3947-01 X 100169968 100169968 G A XKRX Missense_Mutation p.P237S 0.31 deleterious(0.04) benign(0.037) TCGA-AA-3947-01 X 100879978 100879978 C T ARMCX3 Silent p.Y3Y 0.40 TCGA-AA-3947-01 X 101572287 101572287 G A NXF2 Intron 0.09 TCGA-AA-3947-01 X 10174782 10174782 C A CLCN4 Missense_Mutation p.A270E 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 X 101913111 101913111 T C GPRASP1 3'UTR 0.12 TCGA-AA-3947-01 X 102317865 102317865 G - BEX1 Frame_Shift_Del p.P113Lfs*16 0.32 TCGA-AA-3947-01 X 102842405 102842405 T C TCEAL4 3'UTR 0.37 TCGA-AA-3947-01 X 103358760 103358760 C T ZCCHC18 5'UTR 0.18 TCGA-AA-3947-01 X 103499517 103499517 C T ESX1 Missense_Mutation p.R5H 0.45 tolerated_low_confidence(0.18) benign(0.277) TCGA-AA-3947-01 X 105011182 105011182 T G IL1RAPL2 Missense_Mutation p.L530R 0.14 deleterious(0.04) possibly_damaging(0.457) TCGA-AA-3947-01 X 105451039 105451039 A C MUM1L1 Missense_Mutation p.Q538H 0.08 deleterious(0.01) possibly_damaging(0.855) TCGA-AA-3947-01 X 106173307 106173307 C - CLDN2 3'UTR 0.08 TCGA-AA-3947-01 X 106201599 106201599 C A MORC4 Missense_Mutation p.W451L 0.16 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 X 106844547 106844547 C T FRMPD3 Missense_Mutation p.T1126I 0.10 tolerated_low_confidence(0.46) benign(0) TCGA-AA-3947-01 X 106845186 106845186 G - FRMPD3 Frame_Shift_Del p.G1341Afs*34 0.28 TCGA-AA-3947-01 X 106845504 106845504 T A FRMPD3 Missense_Mutation p.V1445D 0.17 deleterious(0) benign(0.273) TCGA-AA-3947-01 X 106882585 106882585 C T PRPS1 Silent p.G61G 0.12 TCGA-AA-3947-01 X 107225316 107225316 G A TEX13B Silent p.H14H 0.41 TCGA-AA-3947-01 X 107826127 107826127 A G COL4A5 Missense_Mutation p.D317G 0.48 unknown(0) TCGA-AA-3947-01 X 107865096 107865096 G A COL4A5 Missense_Mutation p.G914D 0.34 unknown(0) TCGA-AA-3947-01 X 107978207 107978207 C T IRS4 Silent p.L456L 0.34 TCGA-AA-3947-01 X 11204444 11204444 T - ARHGAP6 Frame_Shift_Del p.A396Pfs*8 0.28 TCGA-AA-3947-01 X 114424786 114424786 G A RBMXL3 Missense_Mutation p.R261H 0.26 tolerated_low_confidence(0.17) benign(0.009) TCGA-AA-3947-01 X 11777758 11777758 A - MSL3 Intron 0.17 TCGA-AA-3947-01 X 118109298 118109298 G A LONRF3 Silent p.G185G 0.42 TCGA-AA-3947-01 X 118786872 118786872 G A SEPT6 Missense_Mutation p.T158M 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 X 119389249 119389249 G A ZBTB33 Missense_Mutation p.G660D 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3947-01 X 119391321 119391321 A T ZBTB33 3'UTR 0.42 TCGA-AA-3947-01 X 120183482 120183482 T G GLUD2 3'UTR 0.32 TCGA-AA-3947-01 X 122616786 122616786 T A GRIA3 Missense_Mutation p.L859H 0.07 deleterious(0) possibly_damaging(0.75) TCGA-AA-3947-01 X 123518404 123518404 A T TENM1 Missense_Mutation p.I2126N 0.38 deleterious(0) benign(0.247) TCGA-AA-3947-01 X 123539054 123539054 C T TENM1 Missense_Mutation p.G1740R 0.41 deleterious(0) possibly_damaging(0.49) TCGA-AA-3947-01 X 123838891 123838891 A G TENM1 Silent p.T329T 0.09 TCGA-AA-3947-01 X 124028164 124028164 A G TENM1 Silent p.A172A 0.37 TCGA-AA-3947-01 X 129146590 129146590 C T BCORL1 Silent p.G41G 0.19 TCGA-AA-3947-01 X 129159073 129159073 G A BCORL1 Missense_Mutation p.R1266Q 0.06 benign(0.142) TCGA-AA-3947-01 X 129306171 129306171 C A RAB33A Silent p.S45S 0.12 TCGA-AA-3947-01 X 129799652 129799652 G A ENOX2 Missense_Mutation p.R356W 0.47 deleterious(0) probably_damaging(0.965) TCGA-AA-3947-01 X 12994403 12994403 C T TMSB4X Missense_Mutation p.A8V 0.09 deleterious(0.04) benign(0.084) TCGA-AA-3947-01 X 130192388 130192388 G A ARHGAP36 5'UTR 0.40 TCGA-AA-3947-01 X 130215563 130215563 C - ARHGAP36 5'UTR 0.33 TCGA-AA-3947-01 X 130408697 130408697 T C IGSF1 Silent p.G1214G 0.07 TCGA-AA-3947-01 X 131212641 131212641 A G FRMD7 Silent p.R468R 0.35 TCGA-AA-3947-01 X 133303585 133303586 - A MIR92A2 RNA 0.25 TCGA-AA-3947-01 X 13337285 13337285 C A ATXN3L Missense_Mutation p.G257C 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 X 133632688 133632688 T A HPRT1 Missense_Mutation p.Y195N 0.36 deleterious(0) probably_damaging(0.956) TCGA-AA-3947-01 X 134185815 134185815 C A FAM127B Missense_Mutation p.E108D 0.09 tolerated(0.38) benign(0.005) TCGA-AA-3947-01 X 134185867 134185867 A G FAM127B Missense_Mutation p.L91P 0.16 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 X 134481146 134481146 C T ZNF449 Nonsense_Mutation p.Q35* 0.08 TCGA-AA-3947-01 X 134481751 134481751 G - ZNF449 Intron 0.18 TCGA-AA-3947-01 X 134947966 134947966 T C CT45A5 Missense_Mutation p.Q120R 0.06 tolerated(0.14) benign(0) TCGA-AA-3947-01 X 134988207 134988207 G A SAGE1 Missense_Mutation p.R160H 0.05 tolerated(1) benign(0.044) TCGA-AA-3947-01 X 134990302 134990302 C T SAGE1 Missense_Mutation p.T405I 0.35 tolerated(0.06) benign(0.001) TCGA-AA-3947-01 X 135764062 135764062 T A ARHGEF6 Silent p.T515T 0.14 TCGA-AA-3947-01 X 136113350 136113350 G A GPR101 Nonsense_Mutation p.Q162* 0.27 TCGA-AA-3947-01 X 13612989 13612989 C T EGFL6 Silent p.C74C 0.11 TCGA-AA-3947-01 X 136649756 136649756 C - ZIC3 Frame_Shift_Del p.R304Gfs*104 0.13 TCGA-AA-3947-01 X 138878545 138878545 T C ATP11C Missense_Mutation p.M368V 0.36 tolerated(0.05) probably_damaging(0.996) TCGA-AA-3947-01 X 139586862 139586862 C T SOX3 Missense_Mutation p.G122S 0.12 tolerated(0.19) probably_damaging(0.987) TCGA-AA-3947-01 X 140967176 140967176 C T MAGEC3 Silent p.A158A 0.17 TCGA-AA-3947-01 X 140985599 140985599 C T MAGEC3 Missense_Mutation p.T638I 0.43 deleterious(0.03) possibly_damaging(0.732) TCGA-AA-3947-01 X 142717164 142717164 C T SLITRK4 Silent p.P587P 0.42 TCGA-AA-3947-01 X 142795173 142795173 A G SPANXN2 Missense_Mutation p.S169P 0.20 tolerated_low_confidence(0.15) unknown(0) TCGA-AA-3947-01 X 142795177 142795177 T C SPANXN2 Silent p.L167L 0.20 TCGA-AA-3947-01 X 142795186 142795186 G A SPANXN2 Silent p.D164D 0.19 TCGA-AA-3947-01 X 1428500 1428500 C T CSF2RA 3'UTR 0.17 TCGA-AA-3947-01 X 142967242 142967242 C A UBE2NL Missense_Mutation p.R14S 0.39 tolerated(0.17) benign(0.055) TCGA-AA-3947-01 X 144906363 144906363 C T SLITRK2 Missense_Mutation p.P807L 0.38 deleterious(0) probably_damaging(0.963) TCGA-AA-3947-01 X 145076312 145076312 T G MIR888 RNA 0.09 TCGA-AA-3947-01 X 146341243 146341243 A G MIR509-3 RNA 0.37 TCGA-AA-3947-01 X 147090171 147090171 G A FMR1NB Missense_Mutation p.G191D 0.35 deleterious(0) probably_damaging(0.969) TCGA-AA-3947-01 X 147743851 147743851 T C AFF2 Silent p.A201A 0.10 TCGA-AA-3947-01 X 148568567 148568567 C T IDS Missense_Mutation p.V146I 0.10 deleterious(0.02) probably_damaging(0.951) TCGA-AA-3947-01 X 148797484 148797484 T C MAGEA11 Missense_Mutation p.L113P 0.22 tolerated(0.21) possibly_damaging(0.66) TCGA-AA-3947-01 X 148798214 148798214 G T MAGEA11 Missense_Mutation p.K356N 0.30 deleterious(0.01) possibly_damaging(0.781) TCGA-AA-3947-01 X 149931226 149931226 C A MTMR1 3'UTR 0.42 TCGA-AA-3947-01 X 150067064 150067064 C A CD99L2 5'UTR 0.70 TCGA-AA-3947-01 X 150839593 150839593 A C PASD1 Missense_Mutation p.E385D 0.06 tolerated(0.08) possibly_damaging(0.464) TCGA-AA-3947-01 X 152031181 152031181 C T NSDHL Silent p.G152G 0.08 TCGA-AA-3947-01 X 152087589 152087589 A T ZNF185 Missense_Mutation p.E165V 0.37 tolerated(0.21) probably_damaging(0.922) TCGA-AA-3947-01 X 152157735 152157735 G T PNMA5 3'UTR 0.30 TCGA-AA-3947-01 X 152612437 152612437 A C ZNF275 Missense_Mutation p.E98D 0.23 deleterious(0.02) benign(0.358) TCGA-AA-3947-01 X 152613589 152613589 G A ZNF275 3'UTR 0.07 TCGA-AA-3947-01 X 152710635 152710635 A G TREX2 Missense_Mutation p.L85P 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 X 15272944 15272944 G A ASB9 Missense_Mutation p.T66M 0.08 deleterious(0.02) possibly_damaging(0.874) TCGA-AA-3947-01 X 152845440 152845440 G A ATP2B3 Missense_Mutation p.R1116Q 0.38 deleterious(0.01) possibly_damaging(0.57) TCGA-AA-3947-01 X 153034415 153034415 G T PLXNB3 Missense_Mutation p.G450C 0.38 deleterious(0.01) possibly_damaging(0.897) TCGA-AA-3947-01 X 153044524 153044524 C T PLXNB3 3'UTR 0.14 TCGA-AA-3947-01 X 153049623 153049623 G A SRPK3 Missense_Mutation p.G368S 0.53 tolerated(0.46) possibly_damaging(0.862) TCGA-AA-3947-01 X 153052326 153052326 G A IDH3G Missense_Mutation p.A285V 0.25 deleterious(0.02) benign(0.054) TCGA-AA-3947-01 X 153220766 153220766 C T HCFC1 Silent p.T1028T 0.08 TCGA-AA-3947-01 X 153222791 153222791 G A HCFC1 Missense_Mutation p.A776V 0.07 deleterious(0.03) probably_damaging(0.986) TCGA-AA-3947-01 X 153278805 153278805 G - IRAK1 Frame_Shift_Del p.P540Lfs*53 0.11 TCGA-AA-3947-01 X 153580296 153580296 C T FLNA Missense_Mutation p.R2288H 0.41 tolerated(0.23) benign(0.017) TCGA-AA-3947-01 X 153581487 153581487 C T FLNA Silent p.P2036P 0.40 TCGA-AA-3947-01 X 153595212 153595212 T C FLNA Missense_Mutation p.E292G 0.23 deleterious(0) probably_damaging(0.973) TCGA-AA-3947-01 X 153662699 153662699 C T ATP6AP1 Missense_Mutation p.A277V 0.26 tolerated(0.06) benign(0.007) TCGA-AA-3947-01 X 153667439 153667439 G A GDI1 Missense_Mutation p.G114D 0.12 deleterious(0.02) benign(0.176) TCGA-AA-3947-01 X 153670883 153670883 C T GDI1 Missense_Mutation p.S403F 0.36 deleterious(0) probably_damaging(0.984) TCGA-AA-3947-01 X 153671151 153671151 C T GDI1 3'UTR 0.30 TCGA-AA-3947-01 X 153695786 153695786 T C PLXNA3 Missense_Mutation p.V1138A 0.41 tolerated(0.27) benign(0.158) TCGA-AA-3947-01 X 153716752 153716752 C T SLC10A3 Silent p.T176T 0.38 TCGA-AA-3947-01 X 154115641 154115641 A - F8A1 Frame_Shift_Del p.K332Rfs*17 0.14 TCGA-AA-3947-01 X 154221252 154221252 A G F8 Missense_Mutation p.L187S 0.39 deleterious(0) possibly_damaging(0.868) TCGA-AA-3947-01 X 15497927 15497927 C T PIR Silent p.P38P 0.06 TCGA-AA-3947-01 X 15596418 15596418 A G ACE2 Missense_Mutation p.V364A 0.33 deleterious(0) possibly_damaging(0.858) TCGA-AA-3947-01 X 1584565 1584565 G A P2RY8 Missense_Mutation p.A296V 0.07 deleterious(0.02) benign(0.33) TCGA-AA-3947-01 X 1742081 1742081 C - ASMT Frame_Shift_Del p.P41Qfs*13 0.27 TCGA-AA-3947-01 X 17739631 17739631 T A NHS Missense_Mutation p.I308N 0.05 deleterious(0.04) possibly_damaging(0.691) TCGA-AA-3947-01 X 17745963 17745963 T C NHS Missense_Mutation p.V1225A 0.05 tolerated_low_confidence(0.38) benign(0.002) TCGA-AA-3947-01 X 17745982 17745982 T C NHS Silent p.R1231R 0.04 TCGA-AA-3947-01 X 18222010 18222010 G A BEND2 Missense_Mutation p.A173V 0.35 tolerated(0.27) benign(0.002) TCGA-AA-3947-01 X 18660214 18660214 G T RS1 Silent p.I195I 0.11 TCGA-AA-3947-01 X 18936842 18936842 G A PHKA2 Silent p.D698D 0.17 TCGA-AA-3947-01 X 19046349 19046349 A - GPR64 Frame_Shift_Del p.F122Lfs*21 0.08 TCGA-AA-3947-01 X 19389554 19389554 G A MAP3K15 Missense_Mutation p.A1068V 0.09 tolerated(0.18) benign(0.083) TCGA-AA-3947-01 X 200958 200958 C A PLCXD1 Missense_Mutation p.P35H 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 X 21581500 21581500 C A CNKSR2 Missense_Mutation p.P513H 0.35 tolerated(0.15) probably_damaging(0.971) TCGA-AA-3947-01 X 23018388 23018388 A G DDX53 Missense_Mutation p.K72E 0.07 deleterious(0) possibly_damaging(0.731) TCGA-AA-3947-01 X 23803906 23803906 G T SAT1 Missense_Mutation p.S150I 0.05 deleterious(0.04) benign(0.162) TCGA-AA-3947-01 X 24080575 24080575 T C EIF2S3 Missense_Mutation p.L174P 0.08 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 X 24608140 24608140 C A PCYT1B Missense_Mutation p.K162N 0.09 deleterious(0.03) possibly_damaging(0.649) TCGA-AA-3947-01 X 24732754 24732754 T C POLA1 Missense_Mutation p.F138L 0.33 tolerated(0.22) benign(0.033) TCGA-AA-3947-01 X 24861721 24861721 C A POLA1 Missense_Mutation p.P1319H 0.10 deleterious(0) probably_damaging(0.997) TCGA-AA-3947-01 X 2772118 2772118 G A GYG2 Missense_Mutation p.G114R 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 X 27839935 27839935 T A MAGEB10 Missense_Mutation p.V171E 0.05 deleterious(0.02) possibly_damaging(0.896) TCGA-AA-3947-01 X 2843762 2843762 G A ARSD Missense_Mutation p.T30M 0.15 tolerated(0.13) possibly_damaging(0.488) TCGA-AA-3947-01 X 30238196 30238196 T C MAGEB2 3'UTR 0.50 TCGA-AA-3947-01 X 31222121 31222121 C T DMD Missense_Mutation p.G3255E 0.38 probably_damaging(0.976) TCGA-AA-3947-01 X 3228775 3228775 T C MXRA5 Missense_Mutation p.Y2490C 0.05 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 X 32361342 32361342 T C DMD Missense_Mutation p.K1883R 0.04 possibly_damaging(0.486) TCGA-AA-3947-01 X 3238722 3238722 T C MXRA5 Silent p.S1668S 0.37 TCGA-AA-3947-01 X 32430014 32430014 T C DMD Missense_Mutation p.K1363R 0.08 possibly_damaging(0.828) TCGA-AA-3947-01 X 34961104 34961104 G T FAM47B Silent p.T52T 0.35 TCGA-AA-3947-01 X 34961331 34961331 A C FAM47B Missense_Mutation p.K128T 0.06 deleterious(0.02) probably_damaging(0.974) TCGA-AA-3947-01 X 35820382 35820382 G A MAGEB16 Silent p.Q23Q 0.43 TCGA-AA-3947-01 X 3592724 3592724 C T PRKX Missense_Mutation p.D84N 0.07 deleterious(0.02) benign(0.192) TCGA-AA-3947-01 X 38664127 38664127 C T MID1IP1 5'UTR 0.10 TCGA-AA-3947-01 X 40523639 40523639 C T MED14 Missense_Mutation p.R1123H 0.09 tolerated(0.18) benign(0.23) TCGA-AA-3947-01 X 41307058 41307058 G - NYX 5'UTR 0.27 TCGA-AA-3947-01 X 41555108 41555108 C T GPR34 Silent p.I74I 0.20 TCGA-AA-3947-01 X 41555896 41555896 T C GPR34 Missense_Mutation p.I337T 0.38 tolerated(1) benign(0.013) TCGA-AA-3947-01 X 41587497 41587497 A - GPR82 3'UTR 0.16 TCGA-AA-3947-01 X 44919864 44919864 C A KDM6A Intron 0.36 TCGA-AA-3947-01 X 44929551 44929551 C T KDM6A Missense_Mutation p.S884L 0.39 tolerated(0.28) benign(0.146) TCGA-AA-3947-01 X 44970706 44970706 A G KDM6A 3'UTR 0.12 TCGA-AA-3947-01 X 46322701 46322701 G - KRBOX4 Frame_Shift_Del p.T73Pfs*21 0.10 TCGA-AA-3947-01 X 46521494 46521494 C T SLC9A7 Missense_Mutation p.G333D 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3947-01 X 46529070 46529070 A - SLC9A7 Frame_Shift_Del p.F255Lfs*11 0.28 TCGA-AA-3947-01 X 46696475 46696475 G A RP2 5'UTR 0.09 TCGA-AA-3947-01 X 47444434 47444434 C A TIMP1 Intron 0.43 TCGA-AA-3947-01 X 47774360 47774360 T G ZNF81 Missense_Mutation p.I105M 0.08 tolerated(0.23) benign(0.115) TCGA-AA-3947-01 X 47976486 47976486 G A SSX6 3'Flank 0.38 TCGA-AA-3947-01 X 47979007 47979007 T C SSX6 RNA 0.10 TCGA-AA-3947-01 X 48211571 48211571 C A SSX3 Missense_Mutation p.Q98H 0.34 deleterious(0.03) possibly_damaging(0.764) TCGA-AA-3947-01 X 48325402 48325402 G A SLC38A5 Silent p.S64S 0.33 TCGA-AA-3947-01 X 48652359 48652359 G A GATA1 Missense_Mutation p.G344R 0.16 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-AA-3947-01 X 48755580 48755580 G T PQBP1 5'UTR 0.09 TCGA-AA-3947-01 X 48760253 48760253 C T PQBP1 Silent p.G230G 0.12 TCGA-AA-3947-01 X 48834579 48834579 C T GRIPAP1 Intron 0.39 TCGA-AA-3947-01 X 48839840 48839840 G A GRIPAP1 Missense_Mutation p.R429W 0.16 probably_damaging(0.997) TCGA-AA-3947-01 X 48887734 48887734 C T TFE3 Missense_Mutation p.V555M 0.17 tolerated(0.26) possibly_damaging(0.86) TCGA-AA-3947-01 X 48889018 48889018 A G TFE3 Missense_Mutation p.V393A 0.38 deleterious(0) unknown(0) TCGA-AA-3947-01 X 49066200 49066200 G T CACNA1F Silent p.G1581G 0.40 TCGA-AA-3947-01 X 49076957 49076957 C A CACNA1F Missense_Mutation p.E798D 0.42 tolerated(0.25) benign(0.001) TCGA-AA-3947-01 X 49084577 49084577 G A CACNA1F Silent p.L347L 0.20 TCGA-AA-3947-01 X 49092058 49092058 G A CCDC22 5'UTR 0.35 TCGA-AA-3947-01 X 49099414 49099414 T C CCDC22 Missense_Mutation p.W142R 0.38 deleterious(0) probably_damaging(0.988) TCGA-AA-3947-01 X 49099792 49099792 C A CCDC22 Missense_Mutation p.P193H 0.47 deleterious(0.01) probably_damaging(0.976) TCGA-AA-3947-01 X 50094774 50094774 G A CCNB3 3'UTR 0.37 TCGA-AA-3947-01 X 50350765 50350770 TGCTGT - SHROOM4 In_Frame_Del p.Q1127_Q1128del 0.27 TCGA-AA-3947-01 X 50378664 50378664 C T SHROOM4 Missense_Mutation p.V137M 0.35 deleterious(0.04) possibly_damaging(0.864) TCGA-AA-3947-01 X 51637828 51637828 C A MAGED1 Missense_Mutation p.L51I 0.38 deleterious_low_confidence(0) unknown(0) TCGA-AA-3947-01 X 52842196 52842196 A G XAGE5 Silent p.E35E 0.37 TCGA-AA-3947-01 X 53230752 53230752 G A KDM5C Nonsense_Mutation p.R681* 0.45 TCGA-AA-3947-01 X 53247028 53247028 C T KDM5C Missense_Mutation p.E158K 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3947-01 X 53271078 53271078 G T IQSEC2 Missense_Mutation p.P968H 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3947-01 X 53439063 53439063 T A SMC1A Missense_Mutation p.D332V 0.05 tolerated(0.13) benign(0.261) TCGA-AA-3947-01 X 53573424 53573424 G A HUWE1 Silent p.L3630L 0.39 TCGA-AA-3947-01 X 53581673 53581673 C T HUWE1 Silent p.E2805E 0.08 TCGA-AA-3947-01 X 53644317 53644317 G A HUWE1 Missense_Mutation p.A588V 0.21 probably_damaging(0.999) TCGA-AA-3947-01 X 54114314 54114314 G T FAM120C Silent p.A837A 0.07 TCGA-AA-3947-01 X 54159158 54159158 G A FAM120C Missense_Mutation p.R677C 0.36 deleterious(0.03) probably_damaging(0.975) TCGA-AA-3947-01 X 54491902 54491902 C T FGD1 Missense_Mutation p.D540N 0.16 deleterious(0) probably_damaging(0.996) TCGA-AA-3947-01 X 54496799 54496799 G A FGD1 Missense_Mutation p.P251S 0.42 tolerated(0.44) possibly_damaging(0.641) TCGA-AA-3947-01 X 55479411 55479411 G A MAGEH1 Missense_Mutation p.D202N 0.46 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-AA-3947-01 X 55479467 55479467 A G MAGEH1 Silent p.%3D 0.41 TCGA-AA-3947-01 X 56291946 56291946 C T KLF8 Silent p.L139L 0.08 TCGA-AA-3947-01 X 56590529 56590529 A - UBQLN2 Frame_Shift_Del p.I75Ffs*7 0.10 TCGA-AA-3947-01 X 56591472 56591472 C T UBQLN2 Missense_Mutation p.A389V 0.08 deleterious(0) possibly_damaging(0.697) TCGA-AA-3947-01 X 57623503 57623503 C T ZXDB 3'UTR 0.35 TCGA-AA-3947-01 X 57934270 57934270 A C ZXDA 3'UTR 0.23 TCGA-AA-3947-01 X 57936233 57936233 G - ZXDA Frame_Shift_Del p.Q208Kfs*22 0.08 TCGA-AA-3947-01 X 63409805 63409805 G A AMER1 Missense_Mutation p.A1121V 0.06 deleterious(0.01) benign(0.034) TCGA-AA-3947-01 X 63569908 63569908 C T MTMR8 Missense_Mutation p.V171I 0.44 tolerated(0.27) benign(0.349) TCGA-AA-3947-01 X 64955215 64955215 T A MSN Silent p.R294R 0.07 TCGA-AA-3947-01 X 65819393 65819393 C - EDA2R Frame_Shift_Del p.G297Efs*? 0.27 TCGA-AA-3947-01 X 69282423 69282423 C T OTUD6A Missense_Mutation p.R17C 0.44 deleterious(0.02) possibly_damaging(0.63) TCGA-AA-3947-01 X 69283015 69283015 C T OTUD6A Missense_Mutation p.T214M 0.45 deleterious(0) benign(0.425) TCGA-AA-3947-01 X 69456955 69456955 G A AWAT1 Missense_Mutation p.G106D 0.20 deleterious(0) possibly_damaging(0.901) TCGA-AA-3947-01 X 69479031 69479031 G A P2RY4 Silent p.R148R 0.42 TCGA-AA-3947-01 X 70331303 70331303 C T IL2RG Silent p.T29T 0.07 TCGA-AA-3947-01 X 70338442 70338442 C T MED12 5'Flank 0.29 TCGA-AA-3947-01 X 70360641 70360641 A G MED12 Silent p.Q2067Q 0.25 TCGA-AA-3947-01 X 70618538 70618538 G A TAF1 Missense_Mutation p.G1266D 0.07 tolerated(0.11) benign(0.331) TCGA-AA-3947-01 X 70824220 70824220 G A ACRC Missense_Mutation p.D365N 0.40 unknown(0) TCGA-AA-3947-01 X 71350438 71350438 G T RGAG4 Missense_Mutation p.P318Q 0.25 deleterious(0.02) possibly_damaging(0.712) TCGA-AA-3947-01 X 71357003 71357003 G A NHSL2 Missense_Mutation p.V274M 0.42 tolerated(0.55) benign(0.216) TCGA-AA-3947-01 X 72434423 72434423 G A NAP1L2 5'UTR 0.21 TCGA-AA-3947-01 X 73812150 73812150 G A RLIM Missense_Mutation p.R334W 0.28 tolerated(0.07) unknown(0) TCGA-AA-3947-01 X 74742874 74742874 T C ZDHHC15 5'UTR 0.40 TCGA-AA-3947-01 X 75651244 75651244 G A MAGEE1 3'UTR 0.07 TCGA-AA-3947-01 X 76937787 76937787 C A ATRX Missense_Mutation p.K987N 0.32 benign(0.064) TCGA-AA-3947-01 X 77041532 77041532 C T ATRX 5'UTR 0.39 TCGA-AA-3947-01 X 77301887 77301887 T C ATP7A Silent p.D1441D 0.38 TCGA-AA-3947-01 X 78010355 78010355 A - LPAR4 5'UTR 0.40 TCGA-AA-3947-01 X 7811181 7811181 T C VCX 5'UTR 0.20 TCGA-AA-3947-01 X 7889833 7889834 - GTC PNPLA4 In_Frame_Ins p.R110dup 0.38 TCGA-AA-3947-01 X 82763972 82763972 G A POU3F4 Missense_Mutation p.D214N 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3947-01 X 82764449 82764449 C T POU3F4 3'UTR 0.34 TCGA-AA-3947-01 X 83361379 83361379 T C RPS6KA6 Silent p.A453A 0.22 TCGA-AA-3947-01 X 86772939 86772939 C A KLHL4 Missense_Mutation p.L15I 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3947-01 X 88008474 88008474 A C CPXCR1 Missense_Mutation p.E20A 0.10 deleterious(0.01) possibly_damaging(0.801) TCGA-AA-3947-01 X 91133416 91133416 T A PCDH11X Missense_Mutation p.I726N 0.41 deleterious(0) probably_damaging(0.99) TCGA-AA-3947-01 X 91134309 91134309 T - PCDH11X Intron 0.24 TCGA-AA-3947-01 X 91873780 91873780 A G PCDH11X Silent p.G1295G 0.19 TCGA-AA-3947-01 X 92965491 92965491 A G FAM133A 3'UTR 0.09 TCGA-AA-3947-01 X 92966809 92966810 - A FAM133A 3'UTR 0.26 TCGA-AA-3947-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.26 TCGA-AA-3947-01 X 99941606 99941606 C T SYTL4 Intron 0.43 TCGA-AA-3984-01 10 100995386 100995386 C A HPSE2 Missense_Mutation p.K58N 0.24 tolerated(0.1) benign(0.223) TCGA-AA-3984-01 10 101163356 101163356 C A GOT1 Nonsense_Mutation p.E277* 0.28 TCGA-AA-3984-01 10 101373638 101373638 C T SLC25A28 Missense_Mutation p.R112H 0.37 deleterious(0.05) possibly_damaging(0.806) TCGA-AA-3984-01 10 101464282 101464282 C A ENTPD7 Missense_Mutation p.L553I 0.24 deleterious(0) probably_damaging(0.945) TCGA-AA-3984-01 10 101502982 101502982 T A CUTC Missense_Mutation p.F89Y 0.30 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 10 101563999 101563999 C T ABCC2 Missense_Mutation p.A478V 0.11 deleterious(0.02) possibly_damaging(0.605) TCGA-AA-3984-01 10 101569957 101569957 C T ABCC2 Nonsense_Mutation p.R628* 0.28 TCGA-AA-3984-01 10 101591453 101591453 C A ABCC2 Missense_Mutation p.S990Y 0.30 tolerated(0.61) benign(0.013) TCGA-AA-3984-01 10 101601738 101601738 G A ABCC2 Missense_Mutation p.R1210H 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-AA-3984-01 10 102013229 102013229 C A CWF19L1 Missense_Mutation p.R191I 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 10 102016154 102016154 T C CWF19L1 Silent p.V123V 0.25 TCGA-AA-3984-01 10 102051087 102051087 T G PKD2L1 Missense_Mutation p.K660Q 0.26 tolerated(1) benign(0.001) TCGA-AA-3984-01 10 102684115 102684115 G T FAM178A Missense_Mutation p.A453S 0.10 tolerated(0.58) benign(0.025) TCGA-AA-3984-01 10 102743542 102743542 C T SEMA4G Missense_Mutation p.A729V 0.34 tolerated(0.28) possibly_damaging(0.836) TCGA-AA-3984-01 10 102896490 102896490 G A TLX1 Silent p.A271A 0.26 TCGA-AA-3984-01 10 103342827 103342827 A C POLL Intron 0.41 TCGA-AA-3984-01 10 103371150 103371150 C T FBXW4 Silent p.S379S 0.39 TCGA-AA-3984-01 10 103371430 103371430 G A FBXW4 Silent p.Y358Y 0.09 TCGA-AA-3984-01 10 103531226 103531226 G A FGF8 Silent p.I146I 0.09 TCGA-AA-3984-01 10 103558601 103558601 T G MGEA5 Missense_Mutation p.K603Q 0.08 tolerated(0.15) probably_damaging(0.94) TCGA-AA-3984-01 10 103772632 103772632 C T C10orf76 Missense_Mutation p.G243E 0.14 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 10 104127242 104127242 G A GBF1 Missense_Mutation p.R855H 0.19 deleterious(0.01) possibly_damaging(0.86) TCGA-AA-3984-01 10 104241841 104241841 A C ACTR1A Missense_Mutation p.F281C 0.18 tolerated(0.09) benign(0.013) TCGA-AA-3984-01 10 104250313 104250313 G A ACTR1A Missense_Mutation p.P36S 0.13 tolerated(0.09) benign(0.039) TCGA-AA-3984-01 10 104378942 104378942 C T SUFU Intron 0.31 TCGA-AA-3984-01 10 104416556 104416556 C T TRIM8 Silent p.C367C 0.33 TCGA-AA-3984-01 10 104572492 104572492 C T WBP1L Missense_Mutation p.P166S 0.33 tolerated(0.28) benign(0.013) TCGA-AA-3984-01 10 104632915 104632915 A C AS3MT Missense_Mutation p.N128T 0.31 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 10 104632933 104632933 G A AS3MT Missense_Mutation p.G134D 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 10 105107069 105107069 A C PCGF6 Intron 0.26 TCGA-AA-3984-01 10 105169476 105169476 G A PDCD11 Silent p.T297T 0.07 TCGA-AA-3984-01 10 105200309 105200309 C T PDCD11 Missense_Mutation p.R1471W 0.29 deleterious(0.02) benign(0.016) TCGA-AA-3984-01 10 105236169 105236169 T C CALHM3 Missense_Mutation p.N142S 0.10 tolerated(0.35) benign(0.297) TCGA-AA-3984-01 10 1058589 1058589 G A GTPBP4 Missense_Mutation p.R510Q 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 10 106160518 106160518 G A CCDC147 Silent p.K632K 0.29 TCGA-AA-3984-01 10 106982921 106982921 A C SORCS3 Missense_Mutation p.N928H 0.25 deleterious(0.01) possibly_damaging(0.738) TCGA-AA-3984-01 10 1089330 1089330 A C IDI1 Nonsense_Mutation p.L106* 0.30 TCGA-AA-3984-01 10 112838364 112838364 G A ADRA2A Missense_Mutation p.E204K 0.11 tolerated(1) benign(0.001) TCGA-AA-3984-01 10 112839624 112839624 G A ADRA2A 3'UTR 0.09 TCGA-AA-3984-01 10 1130366 1130366 G A WDR37 Silent p.T140T 0.33 TCGA-AA-3984-01 10 114911560 114911560 T C TCF7L2 Missense_Mutation p.Y360H 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 10 115343924 115343924 C T HABP2 Missense_Mutation p.P419S 0.10 tolerated(0.1) benign(0.395) TCGA-AA-3984-01 10 115385834 115385834 G C NRAP Missense_Mutation p.A739G 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 10 115406696 115406696 C T NRAP Missense_Mutation p.E327K 0.30 tolerated(0.33) possibly_damaging(0.487) TCGA-AA-3984-01 10 115639353 115639353 G T NHLRC2 Missense_Mutation p.D270Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 10 115663313 115663313 A C NHLRC2 Missense_Mutation p.N508H 0.21 tolerated(0.57) benign(0.001) TCGA-AA-3984-01 10 115804403 115804403 C T ADRB1 Missense_Mutation p.T171M 0.30 deleterious(0) probably_damaging(0.987) TCGA-AA-3984-01 10 115895707 115895707 T G C10orf118 Missense_Mutation p.E485D 0.32 tolerated(0.3) benign(0.164) TCGA-AA-3984-01 10 115947789 115947789 T G TDRD1 Missense_Mutation p.F67V 0.27 deleterious(0.02) possibly_damaging(0.765) TCGA-AA-3984-01 10 115963844 115963844 G T TDRD1 Missense_Mutation p.A332S 0.26 deleterious(0.01) benign(0.07) TCGA-AA-3984-01 10 116037797 116037797 G A VWA2 Missense_Mutation p.A231T 0.27 tolerated(0.61) benign(0.002) TCGA-AA-3984-01 10 116590638 116590638 G T FAM160B1 Missense_Mutation p.D25Y 0.33 deleterious(0.03) probably_damaging(0.94) TCGA-AA-3984-01 10 116975478 116975478 G T ATRNL1 Nonsense_Mutation p.E458* 0.13 TCGA-AA-3984-01 10 117061476 117061476 G A ATRNL1 Missense_Mutation p.R914Q 0.09 tolerated(0.62) probably_damaging(0.968) TCGA-AA-3984-01 10 118359613 118359613 A G PNLIPRP1 Missense_Mutation p.E290G 0.34 deleterious(0) probably_damaging(0.921) TCGA-AA-3984-01 10 118386482 118386482 G A PNLIPRP2 Silent p.E146E 0.09 TCGA-AA-3984-01 10 118639473 118639473 G T ENO4 Nonsense_Mutation p.E250* 0.10 TCGA-AA-3984-01 10 118711512 118711512 G A KIAA1598 Nonsense_Mutation p.R148* 0.26 TCGA-AA-3984-01 10 118897537 118897537 G A VAX1 Nonsense_Mutation p.R11* 0.11 TCGA-AA-3984-01 10 118969746 118969746 A G KCNK18 Missense_Mutation p.D364G 0.26 tolerated(0.46) benign(0.006) TCGA-AA-3984-01 10 119013902 119013902 C A SLC18A2 Intron 0.23 TCGA-AA-3984-01 10 119307915 119307915 G A EMX2 3'UTR 0.38 TCGA-AA-3984-01 10 11994152 11994152 G A UPF2 Silent p.L983L 0.10 TCGA-AA-3984-01 10 120817733 120817733 C T EIF3A Missense_Mutation p.R571H 0.35 deleterious(0) unknown(0) TCGA-AA-3984-01 10 121259675 121259675 G A RGS10 Missense_Mutation p.P166S 0.17 tolerated(0.16) benign(0.002) TCGA-AA-3984-01 10 121335136 121335136 G A TIAL1 3'UTR 0.28 TCGA-AA-3984-01 10 12136141 12136141 G A DHTKD1 Missense_Mutation p.R410Q 0.33 tolerated(0.26) benign(0.023) TCGA-AA-3984-01 10 121436356 121436356 G T BAG3 Missense_Mutation p.E430D 0.17 tolerated(0.06) unknown(0) TCGA-AA-3984-01 10 121607164 121607164 G A MCMBP Missense_Mutation p.S263F 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 10 121691644 121691644 G A SEC23IP Splice_Site p.X858_splice 0.17 TCGA-AA-3984-01 10 123258013 123258013 C T FGFR2 Silent p.Q557Q 0.09 TCGA-AA-3984-01 10 124268174 124268174 C T HTRA1 Silent p.D336D 0.25 TCGA-AA-3984-01 10 124339144 124339144 C T DMBT1 Nonsense_Mutation p.R244* 0.29 TCGA-AA-3984-01 10 124457719 124457719 G T C10orf120 Missense_Mutation p.H180N 0.10 tolerated(0.17) benign(0) TCGA-AA-3984-01 10 124457915 124457915 C A C10orf120 Missense_Mutation p.L114F 0.08 tolerated(0.51) possibly_damaging(0.483) TCGA-AA-3984-01 10 124692108 124692108 C A C10orf88 Missense_Mutation p.K391N 0.23 deleterious(0) possibly_damaging(0.801) TCGA-AA-3984-01 10 124753246 124753246 A C IKZF5 3'UTR 0.15 TCGA-AA-3984-01 10 124810622 124810622 A G ACADSB Missense_Mutation p.T350A 0.21 deleterious(0.03) benign(0.083) TCGA-AA-3984-01 10 124812606 124812606 C T ACADSB Silent p.I386I 0.21 TCGA-AA-3984-01 10 125651014 125651014 G A CPXM2 Silent p.L54L 0.25 TCGA-AA-3984-01 10 125804284 125804284 C T CHST15 Missense_Mutation p.R233H 0.21 tolerated(0.05) probably_damaging(0.932) TCGA-AA-3984-01 10 125805511 125805511 C T CHST15 Missense_Mutation p.R73H 0.21 tolerated(0.45) possibly_damaging(0.563) TCGA-AA-3984-01 10 127417948 127417948 C T EDRF1 Missense_Mutation p.R306W 0.26 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 10 127458926 127458926 C A MMP21 Missense_Mutation p.R405I 0.33 tolerated(0.12) benign(0.142) TCGA-AA-3984-01 10 127569241 127569241 A G DHX32 Silent p.R51R 0.38 TCGA-AA-3984-01 10 127697918 127697918 C T FANK1 Intron 0.09 TCGA-AA-3984-01 10 127698028 127698028 G A FANK1 3'UTR 0.27 TCGA-AA-3984-01 10 128796362 128796362 A C DOCK1 Missense_Mutation p.K206Q 0.10 tolerated(0.59) benign(0.403) TCGA-AA-3984-01 10 128908585 128908585 G A DOCK1 Missense_Mutation p.E843K 0.30 tolerated(0.57) benign(0.305) TCGA-AA-3984-01 10 129868685 129868685 G A PTPRE Missense_Mutation p.D422N 0.35 tolerated(0.5) benign(0.002) TCGA-AA-3984-01 10 129897378 129897378 T C MKI67 3'UTR 0.25 TCGA-AA-3984-01 10 129906150 129906150 C T MKI67 Silent p.Q1318Q 0.31 TCGA-AA-3984-01 10 129906301 129906301 C T MKI67 Missense_Mutation p.R1268Q 0.19 tolerated(0.23) benign(0.035) TCGA-AA-3984-01 10 129913342 129913342 A C MKI67 Missense_Mutation p.F444V 0.32 tolerated(0.37) benign(0.002) TCGA-AA-3984-01 10 131636162 131636162 C T EBF3 3'UTR 0.32 TCGA-AA-3984-01 10 131959124 131959124 G A GLRX3 Missense_Mutation p.R114Q 0.28 tolerated(0.22) benign(0.013) TCGA-AA-3984-01 10 132896612 132896612 C A TCERG1L Nonsense_Mutation p.E521* 0.28 TCGA-AA-3984-01 10 13341443 13341443 T C PHYH Intron 0.14 TCGA-AA-3984-01 10 13343999 13343999 G A PHYH 5'Flank 0.30 TCGA-AA-3984-01 10 133757651 133757651 T C PPP2R2D Splice_Site p.X188_splice 0.33 TCGA-AA-3984-01 10 133931057 133931057 C T JAKMIP3 Silent p.C204C 0.30 TCGA-AA-3984-01 10 133949485 133949485 A C JAKMIP3 Missense_Mutation p.N341H 0.11 deleterious(0) probably_damaging(0.967) TCGA-AA-3984-01 10 134598551 134598551 C T NKX6-2 Missense_Mutation p.D235N 0.10 deleterious(0) possibly_damaging(0.691) TCGA-AA-3984-01 10 134628363 134628363 C T TTC40 Silent p.A2391A 0.23 TCGA-AA-3984-01 10 134671251 134671251 G A TTC40 Missense_Mutation p.A1806V 0.24 tolerated(0.09) benign(0.016) TCGA-AA-3984-01 10 134713104 134713104 C A TTC40 Missense_Mutation p.M997I 0.11 tolerated(0.08) benign(0.041) TCGA-AA-3984-01 10 134722708 134722708 A G TTC40 Missense_Mutation p.V897A 0.12 deleterious(0) probably_damaging(0.962) TCGA-AA-3984-01 10 134726323 134726323 C T TTC40 Missense_Mutation p.D779N 0.20 tolerated(0.52) benign(0.081) TCGA-AA-3984-01 10 134942875 134942875 C T GPR123 Missense_Mutation p.R515W 0.19 deleterious(0.02) possibly_damaging(0.776) TCGA-AA-3984-01 10 135012975 135012975 C T KNDC1 Silent p.F924F 0.14 TCGA-AA-3984-01 10 135440136 135440136 C T FRG2B Silent p.K37K 0.18 TCGA-AA-3984-01 10 14912635 14912635 C T HSPA14 Missense_Mutation p.R474C 0.22 deleterious(0.02) possibly_damaging(0.851) TCGA-AA-3984-01 10 15146100 15146100 A C RPP38 Missense_Mutation p.K263Q 0.30 deleterious(0) unknown(0) TCGA-AA-3984-01 10 15726019 15726019 G T ITGA8 Missense_Mutation p.F184L 0.25 deleterious(0.01) benign(0.01) TCGA-AA-3984-01 10 16547115 16547115 C T PTER Silent p.L265L 0.25 TCGA-AA-3984-01 10 16957889 16957889 C A CUBN Missense_Mutation p.D2381Y 0.12 deleterious(0.02) possibly_damaging(0.781) TCGA-AA-3984-01 10 17127702 17127702 G T CUBN Missense_Mutation p.F668L 0.13 tolerated(0.92) benign(0.002) TCGA-AA-3984-01 10 17203522 17203522 G T TRDMT1 Missense_Mutation p.L117I 0.25 deleterious(0.01) possibly_damaging(0.719) TCGA-AA-3984-01 10 18242269 18242269 T G SLC39A12 Missense_Mutation p.F22V 0.21 tolerated(0.59) benign(0.001) TCGA-AA-3984-01 10 19780501 19780501 G T MALRD1 Missense_Mutation p.K1074N 0.28 tolerated(0.13) possibly_damaging(0.85) TCGA-AA-3984-01 10 21074832 21074832 G A NEBL Silent p.Y963Y 0.19 TCGA-AA-3984-01 10 21177123 21177123 C G NEBL Missense_Mutation p.G91A 0.26 tolerated(0.33) benign(0.134) TCGA-AA-3984-01 10 21804726 21804726 C T SKIDA1 Missense_Mutation p.D676N 0.36 tolerated(0.7) unknown(0) TCGA-AA-3984-01 10 23482748 23482748 C T PTF1A Silent p.V300V 0.30 TCGA-AA-3984-01 10 24722053 24722053 A G KIAA1217 Missense_Mutation p.E228G 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 10 24832768 24832768 A G KIAA1217 Silent p.P1523P 0.38 TCGA-AA-3984-01 10 24909685 24909685 G A ARHGAP21 Missense_Mutation p.S380F 0.08 deleterious(0.01) probably_damaging(0.959) TCGA-AA-3984-01 10 25887979 25887979 A C GPR158 Missense_Mutation p.K1142Q 0.33 tolerated(0.08) benign(0.007) TCGA-AA-3984-01 10 27459855 27459855 G A MASTL Missense_Mutation p.R656Q 0.09 deleterious(0.04) benign(0.124) TCGA-AA-3984-01 10 27538044 27538044 C T RP11-85G18.6 Intron 0.12 TCGA-AA-3984-01 10 27687143 27687143 G A PTCHD3 3'UTR 0.10 TCGA-AA-3984-01 10 28283975 28283975 C A ARMC4 Nonsense_Mutation p.E33* 0.08 TCGA-AA-3984-01 10 28342880 28342880 A G MPP7 3'UTR 0.17 TCGA-AA-3984-01 10 28906637 28906637 G A WAC Missense_Mutation p.E600K 0.33 tolerated(0.09) probably_damaging(0.991) TCGA-AA-3984-01 10 28971216 28971216 G T BAMBI Missense_Mutation p.E223D 0.09 tolerated_low_confidence(0.15) benign(0.024) TCGA-AA-3984-01 10 29580838 29580838 C A LYZL1 Silent p.V60V 0.41 TCGA-AA-3984-01 10 29840042 29840042 C A SVIL Missense_Mutation p.R104I 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 10 30316632 30316632 G T KIAA1462 Silent p.L815L 0.35 TCGA-AA-3984-01 10 30900761 30900761 A C LYZL2 3'UTR 0.31 TCGA-AA-3984-01 10 30915803 30915803 G T LYZL2 Silent p.V60V 0.08 TCGA-AA-3984-01 10 30987346 30987346 G T SVILP1 RNA 0.23 TCGA-AA-3984-01 10 32856748 32856748 G T CCDC7 Nonsense_Mutation p.E450* 0.08 TCGA-AA-3984-01 10 33218850 33218850 A G ITGB1 Silent p.N92N 0.11 TCGA-AA-3984-01 10 34688310 34688310 C T PARD3 Missense_Mutation p.D280N 0.23 deleterious(0.01) benign(0.089) TCGA-AA-3984-01 10 35437310 35437310 A G CREM Missense_Mutation p.E20G 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.575) TCGA-AA-3984-01 10 35897057 35897057 G A GJD4 Missense_Mutation p.A206T 0.20 tolerated(0.05) possibly_damaging(0.464) TCGA-AA-3984-01 10 37414838 37414838 G T ANKRD30A 5'UTR 0.21 TCGA-AA-3984-01 10 38121183 38121183 A G ZNF248 Missense_Mutation p.L367P 0.07 deleterious(0.04) benign(0.002) TCGA-AA-3984-01 10 38121351 38121351 G A ZNF248 Missense_Mutation p.A311V 0.25 tolerated(0.5) benign(0.039) TCGA-AA-3984-01 10 38466867 38466867 G T RP11-508N22.9 RNA 0.14 TCGA-AA-3984-01 10 43127382 43127382 A C ZNF33B Missense_Mutation p.F82C 0.31 tolerated(0.11) possibly_damaging(0.613) TCGA-AA-3984-01 10 43292951 43292951 G A BMS1 Missense_Mutation p.R690Q 0.33 tolerated(0.18) benign(0.009) TCGA-AA-3984-01 10 43294038 43294038 C A BMS1 Missense_Mutation p.L738I 0.09 tolerated(0.39) benign(0.046) TCGA-AA-3984-01 10 43662509 43662509 C T CSGALNACT2 Missense_Mutation p.A406V 0.23 deleterious(0.01) possibly_damaging(0.646) TCGA-AA-3984-01 10 43882997 43882997 G A HNRNPF Silent p.F112F 0.07 TCGA-AA-3984-01 10 44112443 44112443 A C ZNF485 Silent p.R318R 0.34 TCGA-AA-3984-01 10 44139878 44139878 G A ZNF32 Missense_Mutation p.L148F 0.25 deleterious(0.02) probably_damaging(0.971) TCGA-AA-3984-01 10 45499819 45499819 C A ZNF22 3'UTR 0.20 TCGA-AA-3984-01 10 45652627 45652627 A C RP11-445N18.7 RNA 0.29 TCGA-AA-3984-01 10 45936008 45936008 G A ALOX5 Missense_Mutation p.R371Q 0.20 tolerated(0.21) possibly_damaging(0.669) TCGA-AA-3984-01 10 45959113 45959113 G A MARCH8 Intron 0.29 TCGA-AA-3984-01 10 47087112 47087112 G A NPY4R Missense_Mutation p.G110E 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 10 48372609 48372609 C T ZNF488 3'UTR 0.23 TCGA-AA-3984-01 10 49371703 49371703 G T FRMPD2 Silent p.L1183L 0.10 TCGA-AA-3984-01 10 49663102 49663102 G A ARHGAP22 Silent p.F261F 0.23 TCGA-AA-3984-01 10 49985478 49985478 C A WDFY4 Missense_Mutation p.P1038Q 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 10 50029184 50029184 C T WDFY4 Silent p.F1929F 0.42 TCGA-AA-3984-01 10 5009455 5009455 A C AKR1C1 Intron 0.58 TCGA-AA-3984-01 10 50122063 50122063 A C LRRC18 Missense_Mutation p.I46M 0.21 deleterious(0) probably_damaging(0.985) TCGA-AA-3984-01 10 50165185 50165185 C T WDFY4 Silent p.F2663F 0.24 TCGA-AA-3984-01 10 50165245 50165245 G T WDFY4 Missense_Mutation p.E2683D 0.14 tolerated(1) benign(0.075) TCGA-AA-3984-01 10 50255061 50255061 C T VSTM4 Silent p.P268P 0.29 TCGA-AA-3984-01 10 5043872 5043872 A G AKR1C2 Missense_Mutation p.V29A 0.22 tolerated(0.11) benign(0.03) TCGA-AA-3984-01 10 50820751 50820751 T G SLC18A3 3'UTR 0.36 TCGA-AA-3984-01 10 50887763 50887763 T C C10orf53 Missense_Mutation p.V7A 0.11 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AA-3984-01 10 50954001 50954001 C T OGDHL Missense_Mutation p.R440Q 0.08 deleterious(0.01) possibly_damaging(0.603) TCGA-AA-3984-01 10 51077560 51077560 T G PARG Missense_Mutation p.K192T 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 10 51589266 51589266 T G NCOA4 3'UTR 0.26 TCGA-AA-3984-01 10 52066902 52066902 T C SGMS1 Silent p.%3D 0.09 TCGA-AA-3984-01 10 52066985 52066985 G A SGMS1 Nonsense_Mutation p.R387* 0.30 TCGA-AA-3984-01 10 52390076 52390076 C A RP11-50E11.3 RNA 0.27 TCGA-AA-3984-01 10 5255102 5255102 C T AKR1C4 Missense_Mutation p.R276W 0.26 deleterious(0.04) probably_damaging(0.983) TCGA-AA-3984-01 10 52580383 52580383 G A A1CF Nonsense_Mutation p.R274* 0.17 TCGA-AA-3984-01 10 52619650 52619650 T G A1CF 5'UTR 0.26 TCGA-AA-3984-01 10 53459188 53459188 G A CSTF2T Missense_Mutation p.S41F 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-AA-3984-01 10 5494322 5494322 C A NET1 Nonsense_Mutation p.S122* 0.08 TCGA-AA-3984-01 10 55591175 55591175 C T PCDH15 Missense_Mutation p.E1368K 0.25 deleterious(0.02) benign(0.146) TCGA-AA-3984-01 10 55826640 55826640 T C PCDH15 Silent p.S699S 0.26 TCGA-AA-3984-01 10 56077173 56077173 C T PCDH15 Missense_Mutation p.R245Q 0.39 tolerated(0.26) probably_damaging(0.992) TCGA-AA-3984-01 10 5791625 5791625 A C FAM208B Missense_Mutation p.N2081H 0.23 deleterious(0.01) benign(0.012) TCGA-AA-3984-01 10 5929964 5929964 G A ANKRD16 Silent p.G127G 0.23 TCGA-AA-3984-01 10 60560686 60560686 G A BICC1 Missense_Mutation p.R632Q 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3984-01 10 6063598 6063598 G A IL2RA Silent p.F142F 0.15 TCGA-AA-3984-01 10 6067873 6067873 G A IL2RA Silent p.S60S 0.25 TCGA-AA-3984-01 10 60998464 60998464 C T PHYHIPL Nonsense_Mutation p.R199* 0.12 TCGA-AA-3984-01 10 61412516 61412516 C A SLC16A9 3'UTR 0.10 TCGA-AA-3984-01 10 61414127 61414127 C A SLC16A9 Missense_Mutation p.K219N 0.28 tolerated(0.18) benign(0.005) TCGA-AA-3984-01 10 61552697 61552697 G A CCDC6 Missense_Mutation p.A468V 0.09 tolerated_low_confidence(1) unknown(0) TCGA-AA-3984-01 10 61719291 61719291 G T C10orf40 Intron 0.10 TCGA-AA-3984-01 10 61832027 61832027 G A ANK3 Missense_Mutation p.S2871L 0.27 benign(0.216) TCGA-AA-3984-01 10 61832287 61832287 A C ANK3 Missense_Mutation p.F2784L 0.36 benign(0) TCGA-AA-3984-01 10 61832853 61832853 G A ANK3 Missense_Mutation p.R2596C 0.32 probably_damaging(0.985) TCGA-AA-3984-01 10 61834658 61834658 G A ANK3 Missense_Mutation p.S1994L 0.23 benign(0.005) TCGA-AA-3984-01 10 63170302 63170302 G A TMEM26 Silent p.L295L 0.27 TCGA-AA-3984-01 10 64022538 64022538 G A RTKN2 Nonsense_Mutation p.R35* 0.10 TCGA-AA-3984-01 10 64974016 64974016 T G JMJD1C Missense_Mutation p.K637N 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3984-01 10 64979734 64979734 C T JMJD1C Missense_Mutation p.D153N 0.10 tolerated(0.06) possibly_damaging(0.501) TCGA-AA-3984-01 10 68040273 68040273 G T CTNNA3 Silent p.I613I 0.19 TCGA-AA-3984-01 10 69959306 69959306 C A MYPN Missense_Mutation p.S1156Y 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 10 70190403 70190403 G A DNA2 Silent p.Y752Y 0.08 TCGA-AA-3984-01 10 70243299 70243299 G A SLC25A16 Nonsense_Mutation p.R297* 0.11 TCGA-AA-3984-01 10 70332258 70332258 G T TET1 Nonsense_Mutation p.E55* 0.08 TCGA-AA-3984-01 10 70405958 70405958 C T TET1 Missense_Mutation p.R1158W 0.10 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 10 70508916 70508916 C T CCAR1 Missense_Mutation p.R284C 0.32 deleterious(0) probably_damaging(0.973) TCGA-AA-3984-01 10 70509018 70509018 C T CCAR1 Nonsense_Mutation p.R318* 0.35 TCGA-AA-3984-01 10 70645158 70645158 T C STOX1 Missense_Mutation p.S536P 0.31 deleterious(0.01) possibly_damaging(0.851) TCGA-AA-3984-01 10 70645939 70645939 G T STOX1 Missense_Mutation p.R796I 0.31 tolerated(0.19) benign(0.282) TCGA-AA-3984-01 10 70666701 70666701 T C DDX50 Missense_Mutation p.S108P 0.33 tolerated(0.24) benign(0.008) TCGA-AA-3984-01 10 70673159 70673159 G A DDX50 Missense_Mutation p.R257Q 0.13 tolerated(0.06) benign(0.229) TCGA-AA-3984-01 10 70998834 70998834 C T HKDC1 Nonsense_Mutation p.R178* 0.32 TCGA-AA-3984-01 10 71017135 71017135 T C HKDC1 Missense_Mutation p.M662T 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3984-01 10 71868825 71868825 T G H2AFY2 Missense_Mutation p.F272C 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 10 71883769 71883769 G A AIFM2 Silent p.I24I 0.26 TCGA-AA-3984-01 10 7244459 7244459 G A SFMBT2 Silent p.V490V 0.28 TCGA-AA-3984-01 10 72513721 72513721 A G ADAMTS14 Silent p.R968R 0.18 TCGA-AA-3984-01 10 73475950 73475950 G A C10orf105 Silent p.L49L 0.12 TCGA-AA-3984-01 10 74897789 74897789 A C ECD Silent p.S520S 0.22 TCGA-AA-3984-01 10 75008698 75008698 C A MRPS16 3'UTR 0.08 TCGA-AA-3984-01 10 75037098 75037098 G T TTC18 Nonsense_Mutation p.S877* 0.34 TCGA-AA-3984-01 10 75056723 75056723 A G TTC18 Intron 0.31 TCGA-AA-3984-01 10 75407652 75407652 C T SYNPO2L Silent p.A586A 0.32 TCGA-AA-3984-01 10 75408607 75408607 T G SYNPO2L Missense_Mutation p.K268T 0.35 deleterious(0) benign(0.34) TCGA-AA-3984-01 10 75830842 75830842 G A VCL Splice_Site p.X167_splice 0.06 TCGA-AA-3984-01 10 7608307 7608307 C T ITIH5 Missense_Mutation p.R738H 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 10 7615128 7615128 C A ITIH5 Missense_Mutation p.R670I 0.58 tolerated(0.12) possibly_damaging(0.481) TCGA-AA-3984-01 10 7618965 7618965 C T ITIH5 Missense_Mutation p.E477K 0.25 deleterious(0) probably_damaging(0.952) TCGA-AA-3984-01 10 7745305 7745305 C T ITIH2 5'UTR 0.45 TCGA-AA-3984-01 10 77795768 77795768 C A C10orf11 Nonsense_Mutation p.S17* 0.26 TCGA-AA-3984-01 10 7825108 7825108 A G KIN Missense_Mutation p.S49P 0.12 deleterious(0.02) probably_damaging(0.941) TCGA-AA-3984-01 10 78844406 78844406 C T KCNMA1 Silent p.S504S 0.29 TCGA-AA-3984-01 10 8007253 8007253 G T TAF3 Nonsense_Mutation p.E594* 0.33 TCGA-AA-3984-01 10 8106094 8106094 G A GATA3 Missense_Mutation p.R306Q 0.12 deleterious(0.04) benign(0.062) TCGA-AA-3984-01 10 81272911 81272911 G A EIF5AL1 3'UTR 0.24 TCGA-AA-3984-01 10 81917733 81917733 T G ANXA11 Missense_Mutation p.K442T 0.23 deleterious(0.03) possibly_damaging(0.881) TCGA-AA-3984-01 10 82102057 82102057 C A DYDC1 Nonsense_Mutation p.E104* 0.23 TCGA-AA-3984-01 10 86259689 86259689 G A CCSER2 Missense_Mutation p.R795Q 0.33 deleterious(0.01) benign(0.104) TCGA-AA-3984-01 10 863778 863778 C T LARP4B Missense_Mutation p.E528K 0.24 deleterious(0.02) benign(0.081) TCGA-AA-3984-01 10 87484302 87484302 G A GRID1 Silent p.F555F 0.35 TCGA-AA-3984-01 10 87966133 87966133 C T GRID1 Missense_Mutation p.D170N 0.09 deleterious(0) possibly_damaging(0.733) TCGA-AA-3984-01 10 88211819 88211819 T C WAPAL Missense_Mutation p.T1007A 0.13 tolerated(0.59) possibly_damaging(0.778) TCGA-AA-3984-01 10 88659872 88659872 C T BMPR1A Silent p.C173C 0.10 TCGA-AA-3984-01 10 88703289 88703289 C T MMRN2 Missense_Mutation p.E418K 0.31 deleterious(0) probably_damaging(0.963) TCGA-AA-3984-01 10 88988154 88988154 G T NUTM2A Missense_Mutation p.G173C 0.29 deleterious(0) probably_damaging(0.976) TCGA-AA-3984-01 10 89117794 89117794 T C NUTM2D 5'UTR 0.12 TCGA-AA-3984-01 10 89473853 89473853 A C PAPSS2 Missense_Mutation p.E145A 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 10 90966633 90966633 G T CH25H Missense_Mutation p.F139L 0.22 deleterious(0.02) benign(0.17) TCGA-AA-3984-01 10 91005468 91005468 C T LIPA Missense_Mutation p.R65Q 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-AA-3984-01 10 91066963 91066963 A C IFIT2 Missense_Mutation p.K417T 0.27 deleterious(0.04) benign(0.215) TCGA-AA-3984-01 10 91098792 91098792 T G IFIT3 Missense_Mutation p.F127C 0.30 deleterious(0) probably_damaging(0.943) TCGA-AA-3984-01 10 91353645 91353645 A G PANK1 Missense_Mutation p.V471A 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3984-01 10 91479432 91479432 A C KIF20B Missense_Mutation p.N564T 0.28 tolerated(0.14) benign(0.153) TCGA-AA-3984-01 10 91497245 91497245 A C KIF20B Missense_Mutation p.N843H 0.33 deleterious(0.01) possibly_damaging(0.632) TCGA-AA-3984-01 10 91533786 91533786 G A KIF20B Missense_Mutation p.R1775Q 0.17 deleterious(0.01) benign(0.211) TCGA-AA-3984-01 10 92617005 92617005 C T HTR7 Missense_Mutation p.D142N 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3984-01 10 92645587 92645587 G A RPP30 Missense_Mutation p.D121N 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3984-01 10 93220255 93220255 G A HECTD2 Missense_Mutation p.E114K 0.25 tolerated(0.09) possibly_damaging(0.794) TCGA-AA-3984-01 10 93374 93374 G A TUBB8 Missense_Mutation p.R320C 0.12 deleterious_low_confidence(0.05) possibly_damaging(0.782) TCGA-AA-3984-01 10 93615386 93615386 C T TNKS2 Nonsense_Mutation p.R977* 0.27 TCGA-AA-3984-01 10 93753595 93753595 A C BTAF1 Missense_Mutation p.N1064H 0.27 tolerated(0.16) benign(0.01) TCGA-AA-3984-01 10 94214263 94214263 G A IDE Missense_Mutation p.R1000C 0.23 deleterious(0.04) possibly_damaging(0.673) TCGA-AA-3984-01 10 94268597 94268597 T C IDE Silent p.T316T 0.22 TCGA-AA-3984-01 10 94291644 94291644 G A IDE Silent p.F174F 0.26 TCGA-AA-3984-01 10 94408059 94408059 T G KIF11 Missense_Mutation p.F880V 0.33 tolerated(0.45) benign(0.001) TCGA-AA-3984-01 10 94413594 94413594 A G KIF11 3'UTR 0.08 TCGA-AA-3984-01 10 95070325 95070325 C T MYOF Missense_Mutation p.E1989K 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 10 95107488 95107488 C T MYOF Missense_Mutation p.D1379N 0.25 deleterious(0) probably_damaging(0.929) TCGA-AA-3984-01 10 95381722 95381722 G T PDE6C Nonsense_Mutation p.E253* 0.31 TCGA-AA-3984-01 10 95395327 95395327 G T PDE6C Missense_Mutation p.R448I 0.18 deleterious(0) possibly_damaging(0.739) TCGA-AA-3984-01 10 96267056 96267056 G T TBC1D12 Nonsense_Mutation p.E518* 0.17 TCGA-AA-3984-01 10 96701651 96701651 T G CYP2C9 Missense_Mutation p.F69V 0.30 tolerated(0.07) benign(0.244) TCGA-AA-3984-01 10 96797060 96797060 C T CYP2C8 Missense_Mutation p.R433Q 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 10 97170513 97170513 C A SORBS1 Nonsense_Mutation p.E278* 0.09 TCGA-AA-3984-01 10 97698357 97698357 G T C10orf131 3'UTR 0.09 TCGA-AA-3984-01 10 97698365 97698365 G A C10orf131 3'UTR 0.21 TCGA-AA-3984-01 10 97919915 97919915 G A ZNF518A RNA 0.22 TCGA-AA-3984-01 10 98079113 98079113 G T DNTT Missense_Mutation p.R158I 0.27 deleterious(0.01) possibly_damaging(0.598) TCGA-AA-3984-01 10 98092269 98092269 G T DNTT Missense_Mutation p.K425N 0.29 deleterious(0.02) probably_damaging(0.922) TCGA-AA-3984-01 10 98095721 98095721 A G DNTT Missense_Mutation p.D478G 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 10 98709046 98709046 G A LCOR Missense_Mutation p.E78K 0.25 deleterious(0.05) benign(0.073) TCGA-AA-3984-01 10 98715251 98715251 T G LCOR Missense_Mutation p.L292V 0.30 deleterious(0.01) possibly_damaging(0.636) TCGA-AA-3984-01 10 98741574 98741574 C T C10orf12 Missense_Mutation p.R143W 0.20 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 10 98743353 98743353 G A C10orf12 Missense_Mutation p.A736T 0.10 tolerated(0.97) benign(0.02) TCGA-AA-3984-01 10 99141505 99141505 C T RRP12 Silent p.S429S 0.08 TCGA-AA-3984-01 10 99227319 99227319 G T MMS19 Missense_Mutation p.L414I 0.22 deleterious(0) probably_damaging(0.917) TCGA-AA-3984-01 10 99350488 99350488 G A C10orf62 3'UTR 0.09 TCGA-AA-3984-01 10 99527606 99527606 G A SFRP5 Missense_Mutation p.R207C 0.27 deleterious(0) probably_damaging(0.973) TCGA-AA-3984-01 10 99968129 99968129 G T R3HCC1L Missense_Mutation p.K86N 0.16 deleterious(0) possibly_damaging(0.705) TCGA-AA-3984-01 10 99968528 99968528 G A R3HCC1L Silent p.E219E 0.24 TCGA-AA-3984-01 11 100641095 100641095 A C ARHGAP42 Missense_Mutation p.K59T 0.35 deleterious(0.04) possibly_damaging(0.894) TCGA-AA-3984-01 11 100730331 100730331 G A ARHGAP42 Missense_Mutation p.R120Q 0.26 deleterious(0) possibly_damaging(0.883) TCGA-AA-3984-01 11 101344457 101344457 G T TRPC6 Missense_Mutation p.L598I 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3984-01 11 101765770 101765770 C A ANGPTL5 Missense_Mutation p.K229N 0.11 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 11 101771229 101771229 C A ANGPTL5 Missense_Mutation p.R198I 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 101776545 101776545 C A ANGPTL5 Missense_Mutation p.R92I 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.823) TCGA-AA-3984-01 11 101946838 101946838 C A C11orf70 Intron 0.33 TCGA-AA-3984-01 11 102448100 102448100 T C MMP20 Missense_Mutation p.D470G 0.32 deleterious(0.02) possibly_damaging(0.718) TCGA-AA-3984-01 11 102565775 102565775 G A MMP27 Missense_Mutation p.A319V 0.30 deleterious(0) possibly_damaging(0.532) TCGA-AA-3984-01 11 102815035 102815035 A C MMP13 Missense_Mutation p.I459S 0.25 deleterious(0) possibly_damaging(0.507) TCGA-AA-3984-01 11 103006364 103006364 G T DYNC2H1 Splice_Site p.X782_splice 0.09 TCGA-AA-3984-01 11 103058251 103058251 A C DYNC2H1 Missense_Mutation p.K2359T 0.11 probably_damaging(0.996) TCGA-AA-3984-01 11 1030698 1030698 G A MUC6 Missense_Mutation p.A256V 0.41 unknown(0) TCGA-AA-3984-01 11 103091397 103091397 G A DYNC2H1 Missense_Mutation p.E2998K 0.19 possibly_damaging(0.837) TCGA-AA-3984-01 11 103325983 103325983 C T DYNC2H1 Missense_Mutation p.P4183S 0.10 probably_damaging(0.998) TCGA-AA-3984-01 11 103909023 103909023 C A DDI1 3'UTR 0.36 TCGA-AA-3984-01 11 104874015 104874015 T G CASP5 Missense_Mutation p.K190Q 0.20 deleterious(0.05) benign(0.022) TCGA-AA-3984-01 11 104912125 104912125 G T CARD16 3'UTR 0.21 TCGA-AA-3984-01 11 105795178 105795178 C T GRIA4 Silent p.V510V 0.26 TCGA-AA-3984-01 11 105795216 105795217 - TA GRIA4 Frame_Shift_Ins p.M525Sfs*2 0.21 TCGA-AA-3984-01 11 10580733 10580733 C A LYVE1 Missense_Mutation p.K298N 0.28 deleterious(0.02) possibly_damaging(0.839) TCGA-AA-3984-01 11 10580818 10580818 T C LYVE1 Missense_Mutation p.N270S 0.09 deleterious(0.04) benign(0.091) TCGA-AA-3984-01 11 105881195 105881195 C T MSANTD4 Silent p.P150P 0.18 TCGA-AA-3984-01 11 105929663 105929663 G T KBTBD3 Missense_Mutation p.F54L 0.27 tolerated(0.39) possibly_damaging(0.88) TCGA-AA-3984-01 11 105967730 105967730 G A AASDHPPT 3'UTR 0.36 TCGA-AA-3984-01 11 106681148 106681148 A C GUCY1A2 Missense_Mutation p.F421L 0.10 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 11 106810391 106810391 T C GUCY1A2 Missense_Mutation p.D334G 0.23 tolerated(0.08) benign(0.17) TCGA-AA-3984-01 11 107286981 107286981 T G CWF19L2 Missense_Mutation p.K524T 0.17 deleterious(0) possibly_damaging(0.536) TCGA-AA-3984-01 11 107375908 107375908 G A ALKBH8 Nonsense_Mutation p.R491* 0.20 TCGA-AA-3984-01 11 107422580 107422580 T C ALKBH8 Silent p.K218K 0.11 TCGA-AA-3984-01 11 107427549 107427549 C A ALKBH8 Nonsense_Mutation p.E104* 0.31 TCGA-AA-3984-01 11 107904637 107904637 C T CUL5 Missense_Mutation p.S45L 0.08 tolerated(0.63) benign(0.046) TCGA-AA-3984-01 11 108058901 108058901 C A NPAT Nonsense_Mutation p.E188* 0.28 TCGA-AA-3984-01 11 108115749 108115749 A C ATM Missense_Mutation p.E299D 0.18 tolerated(0.28) benign(0.008) TCGA-AA-3984-01 11 10819275 10819275 C T EIF4G2 3'UTR 0.07 TCGA-AA-3984-01 11 108196105 108196105 A G ATM Missense_Mutation p.D2214G 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-AA-3984-01 11 108203493 108203493 G A ATM Missense_Mutation p.R2598Q 0.18 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 11 10821255 10821255 C T EIF4G2 Missense_Mutation p.G723E 0.32 tolerated(0.28) possibly_damaging(0.887) TCGA-AA-3984-01 11 10823939 10823939 C T EIF4G2 Missense_Mutation p.R347K 0.33 tolerated(0.24) benign(0.015) TCGA-AA-3984-01 11 10827494 10827494 C T EIF4G2 Missense_Mutation p.E70K 0.25 tolerated(0.2) benign(0.162) TCGA-AA-3984-01 11 108380236 108380236 A C EXPH5 3'UTR 0.21 TCGA-AA-3984-01 11 108382015 108382015 C T EXPH5 Missense_Mutation p.E1407K 0.27 tolerated(0.22) benign(0.032) TCGA-AA-3984-01 11 108709246 108709246 G T DDX10 Missense_Mutation p.R680I 0.08 deleterious(0) probably_damaging(0.927) TCGA-AA-3984-01 11 10874981 10874981 T G ZBED5 Missense_Mutation p.K504N 0.23 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 11 10875115 10875115 G A ZBED5 Nonsense_Mutation p.R460* 0.31 TCGA-AA-3984-01 11 110023657 110023657 G T ZC3H12C Nonsense_Mutation p.E263* 0.23 TCGA-AA-3984-01 11 110104186 110104186 C A RDX Missense_Mutation p.D455Y 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3984-01 11 111156799 111156799 C T C11orf53 3'UTR 0.09 TCGA-AA-3984-01 11 111167002 111167002 C A COLCA1 Missense_Mutation p.D68Y 0.26 probably_damaging(0.934) TCGA-AA-3984-01 11 111431029 111431029 A C LAYN Missense_Mutation p.D332A 0.29 deleterious(0) possibly_damaging(0.858) TCGA-AA-3984-01 11 111835352 111835352 G A DIXDC1 Missense_Mutation p.R47Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 11 111948983 111948983 A G C11orf57 Silent p.K38K 0.29 TCGA-AA-3984-01 11 111949019 111949019 A C C11orf57 Missense_Mutation p.K50N 0.28 tolerated(0.18) benign(0.003) TCGA-AA-3984-01 11 113075082 113075082 C T NCAM1 Missense_Mutation p.R127W 0.34 deleterious(0.01) possibly_damaging(0.863) TCGA-AA-3984-01 11 113265715 113265715 C T ANKK1 Missense_Mutation p.S182L 0.25 tolerated(0.31) possibly_damaging(0.729) TCGA-AA-3984-01 11 113270195 113270195 G A ANKK1 Missense_Mutation p.A502T 0.33 tolerated(0.08) benign(0.358) TCGA-AA-3984-01 11 113619019 113619019 G A ZW10 Missense_Mutation p.S350L 0.10 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 11 113672326 113672326 C A USP28 Missense_Mutation p.M979I 0.26 deleterious(0) benign(0.265) TCGA-AA-3984-01 11 113679130 113679130 G A USP28 Missense_Mutation p.R732C 0.10 tolerated(0.06) benign(0.009) TCGA-AA-3984-01 11 113857491 113857491 A G HTR3A Silent p.K325K 0.12 TCGA-AA-3984-01 11 1156647 1156647 G A MUC5AC Missense_Mutation p.E222K 0.28 deleterious(0.02) benign(0.009) TCGA-AA-3984-01 11 116633616 116633616 C T BUD13 Missense_Mutation p.R230Q 0.30 deleterious(0.03) possibly_damaging(0.631) TCGA-AA-3984-01 11 116656573 116656573 C A ZNF259 Missense_Mutation p.R174I 0.26 deleterious(0) benign(0.345) TCGA-AA-3984-01 11 117073766 117073766 G A TAGLN Missense_Mutation p.E13K 0.20 deleterious(0) possibly_damaging(0.696) TCGA-AA-3984-01 11 117150908 117150908 A G RNF214 Missense_Mutation p.K360E 0.39 deleterious(0.01) probably_damaging(0.912) TCGA-AA-3984-01 11 117351190 117351190 G A DSCAML1 Missense_Mutation p.T978M 0.10 deleterious(0) probably_damaging(0.927) TCGA-AA-3984-01 11 117351210 117351210 G A DSCAML1 Silent p.F971F 0.32 TCGA-AA-3984-01 11 117774772 117774772 C T TMPRSS13 Missense_Mutation p.D476N 0.29 deleterious(0.01) possibly_damaging(0.856) TCGA-AA-3984-01 11 118047121 118047121 C T SCN2B Missense_Mutation p.R9H 0.37 tolerated_low_confidence(0.15) benign(0.181) TCGA-AA-3984-01 11 118342932 118342932 G A KMT2A Missense_Mutation p.R353Q 0.08 probably_damaging(0.945) TCGA-AA-3984-01 11 118373768 118373768 T A KMT2A Missense_Mutation p.D2387E 0.33 benign(0.003) TCGA-AA-3984-01 11 118626184 118626184 T G DDX6 Missense_Mutation p.Q401H 0.26 deleterious(0.01) benign(0.101) TCGA-AA-3984-01 11 118765242 118765242 G A CXCR5 Missense_Mutation p.R330H 0.15 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 11 118882964 118882964 G A CCDC84 Silent p.Q228Q 0.28 TCGA-AA-3984-01 11 118896762 118896762 C T SLC37A4 Missense_Mutation p.R300H 0.25 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 11 118963477 118963477 T G HMBS Missense_Mutation p.C261G 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 119059407 119059407 G A PDZD3 Missense_Mutation p.G373D 0.08 tolerated(0.75) benign(0.002) TCGA-AA-3984-01 11 119243741 119243741 G T USP2 Missense_Mutation p.F150L 0.10 tolerated_low_confidence(0.92) benign(0.015) TCGA-AA-3984-01 11 11964232 11964232 C T USP47 Silent p.I820I 0.26 TCGA-AA-3984-01 11 119983098 119983098 C T TRIM29 3'UTR 0.08 TCGA-AA-3984-01 11 120117184 120117184 G A POU2F3 Missense_Mutation p.D21N 0.27 deleterious(0.04) benign(0.012) TCGA-AA-3984-01 11 120702676 120702676 C T GRIK4 Silent p.D209D 0.28 TCGA-AA-3984-01 11 120833230 120833230 C T GRIK4 Silent p.F702F 0.26 TCGA-AA-3984-01 11 121348842 121348842 G A SORL1 Missense_Mutation p.D140N 0.14 tolerated(0.13) probably_damaging(0.993) TCGA-AA-3984-01 11 121461474 121461474 G A SORL1 Intron 0.56 TCGA-AA-3984-01 11 121970507 121970507 A G MIR125B1 RNA 0.37 TCGA-AA-3984-01 11 122805673 122805673 G A C11orf63 Silent p.Q508Q 0.31 TCGA-AA-3984-01 11 12315181 12315181 G A MICALCL Missense_Mutation p.R68Q 0.14 tolerated(0.14) benign(0.116) TCGA-AA-3984-01 11 123601390 123601390 T C ZNF202 Silent p.E69E 0.26 TCGA-AA-3984-01 11 123624902 123624902 C T OR6X1 Missense_Mutation p.E109K 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 123625050 123625050 G T OR6X1 Missense_Mutation p.F59L 0.17 deleterious(0.03) benign(0.274) TCGA-AA-3984-01 11 12376378 12376378 A C MICALCL Missense_Mutation p.K626T 0.34 deleterious(0.02) benign(0.248) TCGA-AA-3984-01 11 123777153 123777153 C A OR8D4 Missense_Mutation p.N5K 0.23 deleterious(0) benign(0.085) TCGA-AA-3984-01 11 123810599 123810599 T C OR4D5 Silent p.I92I 0.29 TCGA-AA-3984-01 11 123814380 123814380 G A OR6T1 Missense_Mutation p.H56Y 0.23 deleterious(0.05) benign(0.103) TCGA-AA-3984-01 11 123909127 123909127 G A OR10G7 Silent p.N194N 0.30 TCGA-AA-3984-01 11 124135611 124135611 C T OR8G5 Missense_Mutation p.P297S 0.11 deleterious(0.01) possibly_damaging(0.664) TCGA-AA-3984-01 11 124252919 124252919 G A OR8B2 Silent p.F107F 0.26 TCGA-AA-3984-01 11 124508462 124508462 C A SIAE Missense_Mutation p.Q432H 0.18 tolerated(0.11) benign(0.004) TCGA-AA-3984-01 11 124530643 124530643 C T SIAE Missense_Mutation p.E96K 0.07 tolerated(0.7) benign(0.002) TCGA-AA-3984-01 11 124564453 124564453 T C SPA17 3'UTR 0.22 TCGA-AA-3984-01 11 124637340 124637340 C T MSANTD2 Missense_Mutation p.R419Q 0.14 tolerated_low_confidence(0.25) benign(0.009) TCGA-AA-3984-01 11 124763897 124763897 G A ROBO4 Missense_Mutation p.P455S 0.26 tolerated(0.49) benign(0.008) TCGA-AA-3984-01 11 124764164 124764164 G A ROBO4 Silent p.C417C 0.28 TCGA-AA-3984-01 11 124790023 124790023 G A HEPACAM 3'UTR 0.17 TCGA-AA-3984-01 11 124949032 124949032 G A SLC37A2 Silent p.P113P 0.37 TCGA-AA-3984-01 11 125505412 125505412 C T CHEK1 Silent p.I234I 0.28 TCGA-AA-3984-01 11 125770238 125770238 A C HYLS1 3'UTR 0.13 TCGA-AA-3984-01 11 125864243 125864243 A C CDON Missense_Mutation p.F862L 0.26 deleterious(0.03) probably_damaging(1) TCGA-AA-3984-01 11 125889658 125889658 G T CDON Missense_Mutation p.L118I 0.36 tolerated(0.23) possibly_damaging(0.668) TCGA-AA-3984-01 11 125893317 125893317 G A CDON Silent p.L19L 0.17 TCGA-AA-3984-01 11 126301251 126301251 G A KIRREL3 Intron 0.13 TCGA-AA-3984-01 11 126305183 126305183 G A KIRREL3 Missense_Mutation p.S523L 0.12 tolerated_low_confidence(1) benign(0.204) TCGA-AA-3984-01 11 128844117 128844117 T C ARHGAP32 Missense_Mutation p.D978G 0.10 tolerated_low_confidence(0.45) benign(0.001) TCGA-AA-3984-01 11 129784872 129784872 G A PRDM10 Silent p.F860F 0.29 TCGA-AA-3984-01 11 129787019 129787019 T C PRDM10 Intron 0.10 TCGA-AA-3984-01 11 129805026 129805026 G T PRDM10 Missense_Mutation p.S376Y 0.10 tolerated(0.12) possibly_damaging(0.804) TCGA-AA-3984-01 11 130011465 130011465 C T APLP2 Missense_Mutation p.R678W 0.20 tolerated(0.09) possibly_damaging(0.654) TCGA-AA-3984-01 11 130068863 130068863 A G ST14 Missense_Mutation p.K569R 0.10 tolerated(0.08) benign(0.222) TCGA-AA-3984-01 11 130104060 130104060 G T ZBTB44 3'UTR 0.31 TCGA-AA-3984-01 11 130275922 130275922 G A ADAMTS8 Missense_Mutation p.A734V 0.29 deleterious(0.02) probably_damaging(0.954) TCGA-AA-3984-01 11 130278505 130278505 T G ADAMTS8 Missense_Mutation p.E651D 0.55 tolerated(1) benign(0.005) TCGA-AA-3984-01 11 131240602 131240602 C A NTM 5'UTR 0.24 TCGA-AA-3984-01 11 131781353 131781353 C T NTM 5'Flank 0.24 TCGA-AA-3984-01 11 132180023 132180023 G A NTM Missense_Mutation p.E227K 0.29 tolerated(0.43) benign(0.003) TCGA-AA-3984-01 11 13380023 13380023 G T ARNTL Missense_Mutation p.M88I 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 11 134055349 134055349 T G NCAPD3 Silent p.V706V 0.24 TCGA-AA-3984-01 11 134055381 134055381 C A NCAPD3 Nonsense_Mutation p.E696* 0.25 TCGA-AA-3984-01 11 134095130 134095130 C T VPS26B Silent p.F38F 0.13 TCGA-AA-3984-01 11 13443229 13443229 A G BTBD10 Silent p.C86C 0.10 TCGA-AA-3984-01 11 14316076 14316076 G A RRAS2 Missense_Mutation p.R117C 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-AA-3984-01 11 14501200 14501200 G A COPB1 Missense_Mutation p.R425C 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 14515240 14515240 G A COPB1 Nonsense_Mutation p.R147* 0.34 TCGA-AA-3984-01 11 14540583 14540583 C T PSMA1 Missense_Mutation p.R9Q 0.12 deleterious(0) probably_damaging(0.969) TCGA-AA-3984-01 11 14902249 14902249 G A CYP2R1 Nonsense_Mutation p.R145* 0.20 TCGA-AA-3984-01 11 16007817 16007817 G A SOX6 Missense_Mutation p.R686W 0.09 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 11 1652116 1652116 G T KRTAP5-5 3'UTR 0.17 TCGA-AA-3984-01 11 1718941 1718941 C A KRTAP5-6 3'UTR 0.26 TCGA-AA-3984-01 11 17483202 17483202 G A ABCC8 Silent p.I250I 0.37 TCGA-AA-3984-01 11 17545007 17545007 C T USH1C Missense_Mutation p.E260K 0.29 deleterious(0.01) possibly_damaging(0.546) TCGA-AA-3984-01 11 17548802 17548802 C T USH1C Missense_Mutation p.R155Q 0.25 deleterious(0.04) benign(0.387) TCGA-AA-3984-01 11 17741678 17741678 C T MYOD1 Missense_Mutation p.R117C 0.42 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 18194680 18194680 C T MRGPRX4 5'UTR 0.16 TCGA-AA-3984-01 11 18194687 18194687 C T MRGPRX4 5'UTR 0.18 TCGA-AA-3984-01 11 18232007 18232007 C T RP11-113D6.10 3'UTR 0.28 TCGA-AA-3984-01 11 18637192 18637192 C T SPTY2D1 Missense_Mutation p.R210Q 0.28 deleterious(0.04) benign(0.238) TCGA-AA-3984-01 11 18725967 18725967 G T TMEM86A 3'UTR 0.31 TCGA-AA-3984-01 11 18740200 18740200 C T IGSF22 Missense_Mutation p.E258K 0.21 tolerated(0.15) probably_damaging(0.999) TCGA-AA-3984-01 11 18955725 18955725 G T MRGPRX1 Missense_Mutation p.L203I 0.22 deleterious(0.04) possibly_damaging(0.501) TCGA-AA-3984-01 11 19247125 19247125 A C E2F8 Silent p.V688V 0.20 TCGA-AA-3984-01 11 20067210 20067210 T G NAV2 Missense_Mutation p.L1322R 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 11 20112466 20112466 T C NAV2 Silent p.L1911L 0.26 TCGA-AA-3984-01 11 20180780 20180780 G A DBX1 Silent p.F142F 0.09 TCGA-AA-3984-01 11 20388776 20388776 T C HTATIP2 Silent p.G118G 0.08 TCGA-AA-3984-01 11 20404583 20404583 C A HTATIP2 Missense_Mutation p.F221L 0.28 tolerated(0.51) benign(0.003) TCGA-AA-3984-01 11 20429517 20429517 G A PRMT3 Missense_Mutation p.A278T 0.07 possibly_damaging(0.614) TCGA-AA-3984-01 11 20625913 20625913 G A SLC6A5 Missense_Mutation p.A208T 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-AA-3984-01 11 21556012 21556012 G A NELL1 Missense_Mutation p.G580S 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 2167613 2167613 C T INS-IGF2 3'Flank 0.26 TCGA-AA-3984-01 11 2186970 2186970 G A TH Silent p.F407F 0.30 TCGA-AA-3984-01 11 22381002 22381002 C T SLC17A6 Silent p.L168L 0.08 TCGA-AA-3984-01 11 22399248 22399248 G T SLC17A6 Missense_Mutation p.D571Y 0.29 deleterious(0) benign(0.212) TCGA-AA-3984-01 11 22747884 22747884 G A GAS2 Missense_Mutation p.G105D 0.12 deleterious(0.02) probably_damaging(0.976) TCGA-AA-3984-01 11 2321801 2321801 G A C11orf21 Silent p.V78V 0.17 TCGA-AA-3984-01 11 26463504 26463504 C T ANO3 Missense_Mutation p.S29L 0.30 deleterious_low_confidence(0.01) benign(0.049) TCGA-AA-3984-01 11 26584709 26584709 C T MUC15 Silent p.T293T 0.26 TCGA-AA-3984-01 11 26587225 26587225 T G MUC15 Missense_Mutation p.N88H 0.10 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-AA-3984-01 11 26669273 26669273 C A ANO3 Missense_Mutation p.L816I 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 11 27018563 27018563 T C FIBIN 3'UTR 0.31 TCGA-AA-3984-01 11 27389496 27389496 G A LGR4 Missense_Mutation p.A925V 0.22 deleterious(0.02) benign(0.382) TCGA-AA-3984-01 11 27397915 27397915 G A LGR4 Missense_Mutation p.S371F 0.28 deleterious(0.03) benign(0.385) TCGA-AA-3984-01 11 27403778 27403778 C T LGR4 Missense_Mutation p.E239K 0.26 deleterious(0.01) possibly_damaging(0.904) TCGA-AA-3984-01 11 27680364 27680364 A C BDNF Intron 0.23 TCGA-AA-3984-01 11 2790111 2790111 C T KCNQ1 Nonsense_Mutation p.R518* 0.13 TCGA-AA-3984-01 11 28352245 28352245 G A METTL15 Missense_Mutation p.E361K 0.29 tolerated(0.09) benign(0.017) TCGA-AA-3984-01 11 2909425 2909425 G T SLC22A18AS Silent p.L249L 0.22 TCGA-AA-3984-01 11 3022407 3022407 G A CARS Silent p.F811F 0.11 TCGA-AA-3984-01 11 30410359 30410359 C A MPPED2 3'UTR 0.23 TCGA-AA-3984-01 11 3150274 3150274 G A OSBPL5 Silent p.S35S 0.11 TCGA-AA-3984-01 11 32461100 32461100 T G WT1 5'Flank 0.23 TCGA-AA-3984-01 11 32657370 32657370 C A CCDC73 Nonsense_Mutation p.E353* 0.22 TCGA-AA-3984-01 11 32955397 32955397 C A QSER1 Missense_Mutation p.L736I 0.32 tolerated(0.07) benign(0.437) TCGA-AA-3984-01 11 33308155 33308155 G T HIPK3 Missense_Mutation p.K65N 0.11 tolerated(0.25) benign(0.384) TCGA-AA-3984-01 11 33564435 33564435 T A KIAA1549L Missense_Mutation p.N145K 0.28 tolerated_low_confidence(0.49) benign(0.002) TCGA-AA-3984-01 11 34074184 34074184 G A CAPRIN1 Splice_Site p.X72_splice 0.26 TCGA-AA-3984-01 11 34129840 34129840 G T NAT10 Missense_Mutation p.R23I 0.34 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 34167858 34167858 G A NAT10 3'UTR 0.32 TCGA-AA-3984-01 11 34378427 34378427 A G ABTB2 Missense_Mutation p.M235T 0.12 tolerated(0.08) benign(0.006) TCGA-AA-3984-01 11 34473654 34473654 G A CAT Missense_Mutation p.R127Q 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 34501694 34501694 C T ELF5 3'UTR 0.21 TCGA-AA-3984-01 11 36596384 36596384 G A RAG1 Silent p.E510E 0.19 TCGA-AA-3984-01 11 36596847 36596847 G T RAG1 Nonsense_Mutation p.E665* 0.23 TCGA-AA-3984-01 11 36599314 36599314 G A RAG1 3'UTR 0.32 TCGA-AA-3984-01 11 36599893 36599893 T C RAG1 3'UTR 0.18 TCGA-AA-3984-01 11 36600606 36600606 A C RAG1 3'UTR 0.24 TCGA-AA-3984-01 11 36680608 36680608 G T C11orf74 Nonsense_Mutation p.E180* 0.12 TCGA-AA-3984-01 11 43419595 43419595 A G TTC17 Silent p.Q330Q 0.22 TCGA-AA-3984-01 11 44069986 44069986 G A ACCSL Missense_Mutation p.D134N 0.09 tolerated(0.34) benign(0.004) TCGA-AA-3984-01 11 4471390 4471390 T C OR52K2 Missense_Mutation p.V274A 0.08 deleterious(0.02) benign(0.047) TCGA-AA-3984-01 11 4471424 4471424 C T OR52K2 Silent p.F285F 0.30 TCGA-AA-3984-01 11 45882569 45882569 C T CRY2 Missense_Mutation p.S234F 0.29 deleterious(0) possibly_damaging(0.632) TCGA-AA-3984-01 11 46456405 46456405 G A AMBRA1 Nonsense_Mutation p.R849* 0.25 TCGA-AA-3984-01 11 46456423 46456423 C T AMBRA1 Missense_Mutation p.E843K 0.24 deleterious(0.01) benign(0.248) TCGA-AA-3984-01 11 46569885 46569885 G A AMBRA1 Nonsense_Mutation p.R16* 0.28 TCGA-AA-3984-01 11 46727333 46727333 G A ZNF408 Missense_Mutation p.A695T 0.22 tolerated(0.6) benign(0.002) TCGA-AA-3984-01 11 4675564 4675564 T C OR51E1 3'UTR 0.29 TCGA-AA-3984-01 11 4675614 4675614 G T OR51E1 3'UTR 0.26 TCGA-AA-3984-01 11 47308066 47308066 G A MADD Silent p.T878T 0.36 TCGA-AA-3984-01 11 47372917 47372917 G A MYBPC3 Silent p.Y55Y 0.31 TCGA-AA-3984-01 11 47446173 47446173 T G PSMC3 Missense_Mutation p.K125N 0.27 deleterious(0.04) benign(0.259) TCGA-AA-3984-01 11 47593175 47593175 G T PTPMT1 Missense_Mutation p.K200N 0.23 tolerated_low_confidence(0.09) benign(0.004) TCGA-AA-3984-01 11 47660291 47660291 G A MTCH2 Missense_Mutation p.S80L 0.34 deleterious(0) benign(0.436) TCGA-AA-3984-01 11 47712381 47712381 C T AGBL2 Missense_Mutation p.R293Q 0.22 tolerated(0.07) benign(0.133) TCGA-AA-3984-01 11 4843169 4843169 C A OR51F2 Missense_Mutation p.S185Y 0.28 deleterious(0) possibly_damaging(0.879) TCGA-AA-3984-01 11 4903827 4903827 G A OR51T1 Missense_Mutation p.R260Q 0.23 tolerated(0.18) benign(0.19) TCGA-AA-3984-01 11 49168255 49168255 C A FOLH1 3'UTR 0.19 TCGA-AA-3984-01 11 4936223 4936223 G A OR51G2 Missense_Mutation p.A224V 0.33 tolerated(1) benign(0.032) TCGA-AA-3984-01 11 4936270 4936270 G A OR51G2 Silent p.I208I 0.23 TCGA-AA-3984-01 11 4936722 4936722 G A OR51G2 Missense_Mutation p.R58C 0.26 deleterious(0) benign(0.001) TCGA-AA-3984-01 11 4944660 4944660 G A OR51G1 Missense_Mutation p.R304C 0.06 deleterious(0.03) possibly_damaging(0.799) TCGA-AA-3984-01 11 4967600 4967600 G T OR51A4 Nonsense_Mutation p.S244* 0.23 TCGA-AA-3984-01 11 5012702 5012702 G T MMP26 Nonsense_Mutation p.E191* 0.10 TCGA-AA-3984-01 11 5020715 5020715 A C OR51L1 Missense_Mutation p.Y168S 0.36 deleterious(0) possibly_damaging(0.872) TCGA-AA-3984-01 11 51515281 51515281 C T OR4C46 5'Flank 0.31 TCGA-AA-3984-01 11 51515585 51515585 G A OR4C46 Missense_Mutation p.E102K 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-AA-3984-01 11 5323079 5323079 T C OR51B4 Missense_Mutation p.Y33C 0.10 deleterious(0.02) benign(0.417) TCGA-AA-3984-01 11 5411327 5411327 C A OR51M1 Silent p.I233I 0.10 TCGA-AA-3984-01 11 5443976 5443976 C T OR51Q1 Silent p.L182L 0.23 TCGA-AA-3984-01 11 55065632 55065632 A G TRIM51HP RNA 0.13 TCGA-AA-3984-01 11 55110920 55110920 G T OR4A16 Missense_Mutation p.D82Y 0.08 deleterious_low_confidence(0) benign(0.347) TCGA-AA-3984-01 11 55111366 55111366 G T OR4A16 Missense_Mutation p.E230D 0.26 deleterious_low_confidence(0) benign(0.181) TCGA-AA-3984-01 11 55405954 55405954 T C OR4P4 Silent p.L41L 0.08 TCGA-AA-3984-01 11 55541605 55541605 G A OR5D13 Missense_Mutation p.R231Q 0.28 tolerated(0.13) benign(0.002) TCGA-AA-3984-01 11 55655718 55655718 G T TRIM51 Missense_Mutation p.A240S 0.20 tolerated(0.14) benign(0.006) TCGA-AA-3984-01 11 55735081 55735081 C A OR10AG1 Missense_Mutation p.D287Y 0.28 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 11 55873092 55873092 A G OR8H2 Missense_Mutation p.T192A 0.30 tolerated(0.06) possibly_damaging(0.734) TCGA-AA-3984-01 11 55873279 55873279 C T OR8H2 Missense_Mutation p.T254I 0.08 deleterious(0) probably_damaging(0.978) TCGA-AA-3984-01 11 55926877 55926877 T G OR8K5 Missense_Mutation p.E306A 0.10 deleterious_low_confidence(0.03) benign(0) TCGA-AA-3984-01 11 56000522 56000522 T C OR5T2 Missense_Mutation p.E47G 0.34 deleterious(0.02) benign(0.046) TCGA-AA-3984-01 11 56020043 56020043 C T OR5T3 Missense_Mutation p.S123L 0.32 deleterious(0.01) benign(0.216) TCGA-AA-3984-01 11 56058407 56058407 C T OR8H1 Silent p.G44G 0.25 TCGA-AA-3984-01 11 56113868 56113868 C A OR8K1 Silent p.L118L 0.35 TCGA-AA-3984-01 11 56143630 56143630 C A OR8U1 Missense_Mutation p.F177L 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 11 56184779 56184779 T G OR5R1 Missense_Mutation p.E310D 0.21 tolerated(0.35) benign(0.15) TCGA-AA-3984-01 11 56237173 56237173 C T OR5M3 Silent p.E267E 0.19 TCGA-AA-3984-01 11 56310346 56310346 G A OR5M11 Missense_Mutation p.R130C 0.40 deleterious(0.04) benign(0.003) TCGA-AA-3984-01 11 56345167 56345167 C T OR5M10 Missense_Mutation p.E11K 0.06 deleterious(0.02) benign(0.088) TCGA-AA-3984-01 11 56409006 56409006 T G OR5AP2 Missense_Mutation p.K304Q 0.22 deleterious(0) possibly_damaging(0.788) TCGA-AA-3984-01 11 5663678 5663678 G T TRIM34 Missense_Mutation p.K272N 0.32 tolerated(0.12) possibly_damaging(0.703) TCGA-AA-3984-01 11 5719544 5719544 G A TRIM22 Splice_Site p.X174_splice 0.25 TCGA-AA-3984-01 11 57381812 57381812 T G SERPING1 Missense_Mutation p.F421V 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 57466162 57466162 C T ZDHHC5 Silent p.F418F 0.32 TCGA-AA-3984-01 11 57571170 57571170 G T CTNND1 Nonsense_Mutation p.E500* 0.34 TCGA-AA-3984-01 11 5757735 5757735 T G OR56B1 5'UTR 0.24 TCGA-AA-3984-01 11 57886022 57886022 C A OR9I1 Missense_Mutation p.D299Y 0.28 deleterious(0.01) benign(0.212) TCGA-AA-3984-01 11 57886537 57886537 C T OR9I1 Missense_Mutation p.R127H 0.32 deleterious(0.01) benign(0.001) TCGA-AA-3984-01 11 57958840 57958840 G A OR9Q2 Missense_Mutation p.R293K 0.26 deleterious(0.04) possibly_damaging(0.624) TCGA-AA-3984-01 11 58125617 58125617 G A OR5B17 Missense_Mutation p.S309F 0.32 deleterious_low_confidence(0.04) benign(0.039) TCGA-AA-3984-01 11 58207358 58207358 G T OR5B12 Missense_Mutation p.F89L 0.23 deleterious_low_confidence(0.03) benign(0) TCGA-AA-3984-01 11 58477658 58477658 A C GLYAT Intron 0.26 TCGA-AA-3984-01 11 58714607 58714607 C T GLYATL1 Intron 0.25 TCGA-AA-3984-01 11 58892779 58892779 G A FAM111B Silent p.P403P 0.11 TCGA-AA-3984-01 11 5905893 5905893 G A OR52E4 Missense_Mutation p.R124H 0.23 deleterious(0.04) benign(0.017) TCGA-AA-3984-01 11 59224492 59224492 C T OR4D6 Missense_Mutation p.S20F 0.28 tolerated(0.22) benign(0) TCGA-AA-3984-01 11 59271208 59271208 C T OR4D11 Missense_Mutation p.R54C 0.19 tolerated(0.08) benign(0.009) TCGA-AA-3984-01 11 59556412 59556412 A C STX3 Missense_Mutation p.K94T 0.34 deleterious(0.02) possibly_damaging(0.841) TCGA-AA-3984-01 11 59611476 59611476 C A GIF Missense_Mutation p.E44D 0.28 tolerated(0.07) probably_damaging(0.98) TCGA-AA-3984-01 11 5969036 5969036 A G OR56A3 Missense_Mutation p.T154A 0.22 tolerated(0.38) benign(0.001) TCGA-AA-3984-01 11 59861468 59861468 T C MS4A2 Missense_Mutation p.I190T 0.33 deleterious(0) probably_damaging(0.96) TCGA-AA-3984-01 11 60468341 60468341 C T MS4A8 Missense_Mutation p.S3L 0.63 tolerated(0.14) benign(0.014) TCGA-AA-3984-01 11 60482508 60482508 G A MS4A8 Silent p.A183A 0.23 TCGA-AA-3984-01 11 60658712 60658712 C T PRPF19 Missense_Mutation p.V481M 0.21 deleterious(0.03) possibly_damaging(0.873) TCGA-AA-3984-01 11 607869 607869 G A PHRF1 Missense_Mutation p.D804N 0.31 tolerated(0.93) benign(0.001) TCGA-AA-3984-01 11 60899522 60899522 A G VPS37C Missense_Mutation p.S280P 0.32 tolerated(0.16) benign(0.004) TCGA-AA-3984-01 11 61032043 61032043 C A VWCE Nonsense_Mutation p.E716* 0.20 TCGA-AA-3984-01 11 61495745 61495745 G A DAGLA Missense_Mutation p.A253T 0.11 tolerated(0.14) benign(0.035) TCGA-AA-3984-01 11 61646227 61646227 C T FADS3 Silent p.G205G 0.32 TCGA-AA-3984-01 11 6191273 6191273 G T OR52B2 Missense_Mutation p.A95D 0.30 deleterious(0.01) benign(0.004) TCGA-AA-3984-01 11 62012254 62012254 T G SCGB1D2 3'UTR 0.24 TCGA-AA-3984-01 11 62040546 62040546 C A SCGB2A2 3'UTR 0.29 TCGA-AA-3984-01 11 62363788 62363788 C T MTA2 Missense_Mutation p.A327T 0.11 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 11 62549389 62549389 G A TAF6L Silent p.T185T 0.21 TCGA-AA-3984-01 11 62652677 62652677 G A SLC3A2 Missense_Mutation p.D385N 0.25 tolerated(0.28) benign(0.006) TCGA-AA-3984-01 11 62655936 62655936 G A SLC3A2 Missense_Mutation p.R556H 0.13 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 62782283 62782283 G A SLC22A8 Missense_Mutation p.R50C 0.49 deleterious(0) possibly_damaging(0.891) TCGA-AA-3984-01 11 6292621 6292621 C T CCKBR Missense_Mutation p.R398C 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 63129913 63129913 G T SLC22A10 3'UTR 0.09 TCGA-AA-3984-01 11 63141498 63141498 T C SLC22A9 Missense_Mutation p.V265A 0.35 deleterious(0.04) benign(0.158) TCGA-AA-3984-01 11 63230887 63230887 C T HRASLS5 3'UTR 0.36 TCGA-AA-3984-01 11 63486932 63486932 G T RTN3 Missense_Mutation p.A320S 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 11 64410073 64410073 C T NRXN2 Intron 0.32 TCGA-AA-3984-01 11 64508441 64508441 C T RASGRP2 Missense_Mutation p.S117N 0.14 tolerated(0.4) benign(0.001) TCGA-AA-3984-01 11 6477355 6477355 C T TRIM3 Missense_Mutation p.A494T 0.26 tolerated(0.48) benign(0.043) TCGA-AA-3984-01 11 6499049 6499049 G A ARFIP2 Nonsense_Mutation p.R257* 0.25 TCGA-AA-3984-01 11 65315278 65315278 C T LTBP3 Missense_Mutation p.E621K 0.22 tolerated(0.2) benign(0.004) TCGA-AA-3984-01 11 65338432 65338432 G A SSSCA1 Missense_Mutation p.D83N 0.14 deleterious(0) probably_damaging(0.984) TCGA-AA-3984-01 11 65390989 65390989 C T PCNXL3 Silent p.F795F 0.24 TCGA-AA-3984-01 11 65648879 65648879 G A CTSW Silent p.E58E 0.40 TCGA-AA-3984-01 11 6568163 6568163 G T DNHD1 Missense_Mutation p.K1998N 0.35 probably_damaging(0.999) TCGA-AA-3984-01 11 6578059 6578059 C T DNHD1 Missense_Mutation p.R2512C 0.23 benign(0.027) TCGA-AA-3984-01 11 65793525 65793525 C T CATSPER1 Missense_Mutation p.R109H 0.38 tolerated(1) benign(0) TCGA-AA-3984-01 11 66010490 66010490 A G PACS1 Missense_Mutation p.T922A 0.16 tolerated(0.12) probably_damaging(0.999) TCGA-AA-3984-01 11 66082320 66082320 G A CD248 Missense_Mutation p.R727C 0.33 deleterious(0) possibly_damaging(0.908) TCGA-AA-3984-01 11 66108473 66108473 C T BRMS1 Missense_Mutation p.E135K 0.27 deleterious(0.04) probably_damaging(0.983) TCGA-AA-3984-01 11 66191170 66191170 T C NPAS4 Silent p.N310N 0.08 TCGA-AA-3984-01 11 66192083 66192083 G A NPAS4 Silent p.L574L 0.29 TCGA-AA-3984-01 11 66311418 66311418 G A ZDHHC24 Missense_Mutation p.R106C 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 11 6631877 6631877 C T ILK 3'UTR 0.13 TCGA-AA-3984-01 11 66407062 66407062 G A RBM4 5'UTR 0.33 TCGA-AA-3984-01 11 6644375 6644375 G A DCHS1 Silent p.A2844A 0.11 TCGA-AA-3984-01 11 66468602 66468602 C T SPTBN2 Missense_Mutation p.D990N 0.11 tolerated(0.06) probably_damaging(0.985) TCGA-AA-3984-01 11 66481798 66481798 C A SPTBN2 Missense_Mutation p.M188I 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-AA-3984-01 11 6661284 6661284 A G DCHS1 Missense_Mutation p.F521L 0.35 tolerated(0.08) probably_damaging(0.978) TCGA-AA-3984-01 11 67767129 67767129 C A UNC93B1 Missense_Mutation p.M138I 0.14 tolerated(0.23) benign(0.011) TCGA-AA-3984-01 11 67790146 67790146 G A ALDH3B1 Missense_Mutation p.V343M 0.28 deleterious(0) probably_damaging(0.989) TCGA-AA-3984-01 11 6806386 6806386 A G OR2AG1 Missense_Mutation p.I40V 0.28 tolerated(0.36) benign(0.002) TCGA-AA-3984-01 11 6806517 6806517 G A OR2AG1 Silent p.A83A 0.14 TCGA-AA-3984-01 11 6815883 6815883 G T OR6A2 3'UTR 0.34 TCGA-AA-3984-01 11 6816736 6816736 G T OR6A2 Silent p.S68S 0.22 TCGA-AA-3984-01 11 68315661 68315661 G A PPP6R3 Missense_Mutation p.D181N 0.28 deleterious(0) benign(0.016) TCGA-AA-3984-01 11 68343482 68343482 G T PPP6R3 Nonsense_Mutation p.E506* 0.29 TCGA-AA-3984-01 11 6867798 6867798 T C OR10A5 Silent p.N295N 0.33 TCGA-AA-3984-01 11 68701360 68701360 G A IGHMBP2 Missense_Mutation p.E506K 0.06 deleterious(0) possibly_damaging(0.783) TCGA-AA-3984-01 11 6913097 6913097 A C OR2D2 Missense_Mutation p.F212C 0.21 tolerated(0.19) benign(0.005) TCGA-AA-3984-01 11 6942481 6942481 C A OR2D3 Silent p.S83S 0.19 TCGA-AA-3984-01 11 69482222 69482222 G A ORAOV1 3'UTR 0.35 TCGA-AA-3984-01 11 69587998 69587998 G A FGF4 3'UTR 0.18 TCGA-AA-3984-01 11 69625163 69625163 C T FGF3 Silent p.R210R 0.10 TCGA-AA-3984-01 11 6962868 6962868 G A ZNF215 Missense_Mutation p.R156Q 0.21 tolerated(0.65) benign(0) TCGA-AA-3984-01 11 70118531 70118531 G A PPFIA1 Missense_Mutation p.A85T 0.38 tolerated(0.14) possibly_damaging(0.493) TCGA-AA-3984-01 11 70176421 70176421 G A PPFIA1 Missense_Mutation p.R358Q 0.20 tolerated(0.05) possibly_damaging(0.801) TCGA-AA-3984-01 11 7022094 7022094 G T ZNF214 Missense_Mutation p.L274M 0.19 tolerated(0.21) possibly_damaging(0.564) TCGA-AA-3984-01 11 7063648 7063648 A C NLRP14 Missense_Mutation p.K131Q 0.28 tolerated(0.25) benign(0.091) TCGA-AA-3984-01 11 71260400 71260400 C T KRTAP5-9 3'UTR 0.25 TCGA-AA-3984-01 11 71260639 71260639 A C KRTAP5-9 3'UTR 0.27 TCGA-AA-3984-01 11 71903260 71903260 T C FOLR1 Missense_Mutation p.W15R 0.31 deleterious(0.01) benign(0.202) TCGA-AA-3984-01 11 72295250 72295250 C T PDE2A Missense_Mutation p.A549T 0.13 tolerated(0.18) benign(0.124) TCGA-AA-3984-01 11 7256040 7256040 G A MIR302E RNA 0.30 TCGA-AA-3984-01 11 73388513 73388513 A G RAB6A 3'UTR 0.33 TCGA-AA-3984-01 11 73814389 73814389 A C C2CD3 Missense_Mutation p.N789K 0.31 tolerated(0.09) benign(0.197) TCGA-AA-3984-01 11 73978232 73978232 T G P4HA3 3'UTR 0.43 TCGA-AA-3984-01 11 74015437 74015437 G T P4HA3 Missense_Mutation p.S74Y 0.11 deleterious(0.03) possibly_damaging(0.879) TCGA-AA-3984-01 11 74329822 74329822 G A POLD3 Silent p.T211T 0.10 TCGA-AA-3984-01 11 74347270 74347270 G A POLD3 Missense_Mutation p.R383Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 11 74562192 74562192 G A XRRA1 Nonsense_Mutation p.R433* 0.08 TCGA-AA-3984-01 11 74799896 74799896 G T OR2AT4 Missense_Mutation p.P288Q 0.08 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 11 74880375 74880375 C T SLCO2B1 Silent p.G202G 0.28 TCGA-AA-3984-01 11 75511496 75511496 C T DGAT2 Silent p.F370F 0.31 TCGA-AA-3984-01 11 75562965 75562965 A G UVRAG Missense_Mutation p.N52S 0.21 deleterious(0.02) possibly_damaging(0.624) TCGA-AA-3984-01 11 76925835 76925835 C T MYO7A 3'UTR 0.20 TCGA-AA-3984-01 11 77103486 77103486 C T PAK1 Missense_Mutation p.G27D 0.10 deleterious_low_confidence(0.04) benign(0.287) TCGA-AA-3984-01 11 77727683 77727683 C T KCTD14 Missense_Mutation p.E242K 0.33 tolerated(1) benign(0) TCGA-AA-3984-01 11 77825000 77825000 G A ALG8 Missense_Mutation p.R237C 0.27 deleterious(0) possibly_damaging(0.496) TCGA-AA-3984-01 11 77919923 77919923 G A USP35 Silent p.E502E 0.09 TCGA-AA-3984-01 11 7817637 7817637 T C OR5P2 Missense_Mutation p.I285V 0.29 deleterious(0.02) possibly_damaging(0.532) TCGA-AA-3984-01 11 78270602 78270602 C A NARS2 Nonsense_Mutation p.E193* 0.17 TCGA-AA-3984-01 11 78282470 78282470 C T NARS2 Missense_Mutation p.R54Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 11 82877043 82877043 G A PCF11 Silent p.S368S 0.28 TCGA-AA-3984-01 11 82878524 82878524 G A PCF11 Missense_Mutation p.R690Q 0.12 tolerated(0.14) benign(0.32) TCGA-AA-3984-01 11 82892904 82892904 A C PCF11 Silent p.I1392I 0.27 TCGA-AA-3984-01 11 82895999 82895999 G T PCF11 3'UTR 0.27 TCGA-AA-3984-01 11 85396652 85396652 C T CCDC89 Silent p.A174A 0.36 TCGA-AA-3984-01 11 85435764 85435764 T G SYTL2 Missense_Mutation p.E579A 0.26 deleterious(0) benign(0.146) TCGA-AA-3984-01 11 85435830 85435830 G T SYTL2 Missense_Mutation p.S557Y 0.26 tolerated(0.11) benign(0.309) TCGA-AA-3984-01 11 85436598 85436598 G A SYTL2 Missense_Mutation p.A301V 0.09 deleterious(0.01) benign(0.002) TCGA-AA-3984-01 11 85723335 85723335 A C PICALM Missense_Mutation p.I216S 0.21 deleterious(0) possibly_damaging(0.887) TCGA-AA-3984-01 11 85961451 85961451 G T EED Missense_Mutation p.K76N 0.10 tolerated(0.16) benign(0.068) TCGA-AA-3984-01 11 86131044 86131044 G A CCDC81 Missense_Mutation p.R589K 0.28 tolerated(0.59) benign(0.003) TCGA-AA-3984-01 11 8639520 8639520 G A TRIM66 Missense_Mutation p.R1237C 0.11 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 11 86521287 86521287 A G PRSS23 3'UTR 0.26 TCGA-AA-3984-01 11 88033707 88033707 G A CTSC Nonsense_Mutation p.R250* 0.30 TCGA-AA-3984-01 11 88300511 88300511 C T GRM5 Silent p.T780T 0.22 TCGA-AA-3984-01 11 88911485 88911485 A C TYR Missense_Mutation p.N122H 0.11 deleterious(0) possibly_damaging(0.897) TCGA-AA-3984-01 11 88924375 88924375 C T TYR Silent p.V275V 0.21 TCGA-AA-3984-01 11 89403599 89403599 G T FOLH1B RNA 0.06 TCGA-AA-3984-01 11 89447470 89447470 G T TRIM77 Missense_Mutation p.R206S 0.26 deleterious(0.03) benign(0.164) TCGA-AA-3984-01 11 89774530 89774530 C T TRIM49C Missense_Mutation p.L391F 0.29 deleterious(0.04) possibly_damaging(0.582) TCGA-AA-3984-01 11 89896175 89896175 G A NAALAD2 Missense_Mutation p.G350R 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 11 89909174 89909174 G A NAALAD2 Missense_Mutation p.A513T 0.16 tolerated(0.08) possibly_damaging(0.703) TCGA-AA-3984-01 11 9009119 9009119 G T NRIP3 Missense_Mutation p.S133Y 0.30 deleterious(0) possibly_damaging(0.829) TCGA-AA-3984-01 11 9042713 9042713 A G SCUBE2 Missense_Mutation p.V932A 0.08 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 11 904718 904718 C T CHID1 Silent p.T33T 0.13 TCGA-AA-3984-01 11 9047307 9047307 G A SCUBE2 Silent p.F875F 0.11 TCGA-AA-3984-01 11 9052385 9052385 C T SCUBE2 Missense_Mutation p.R697Q 0.24 tolerated(0.26) probably_damaging(0.999) TCGA-AA-3984-01 11 92085423 92085423 A C FAT3 Missense_Mutation p.N49H 0.12 benign(0.028) TCGA-AA-3984-01 11 92085664 92085665 - A FAT3 Frame_Shift_Ins p.G131Rfs*23 0.17 TCGA-AA-3984-01 11 92085950 92085950 G T FAT3 Missense_Mutation p.K224N 0.11 possibly_damaging(0.777) TCGA-AA-3984-01 11 92086677 92086677 G T FAT3 Missense_Mutation p.D467Y 0.21 probably_damaging(0.993) TCGA-AA-3984-01 11 92531138 92531138 T G FAT3 Silent p.A1653A 0.14 TCGA-AA-3984-01 11 92531258 92531258 C A FAT3 Silent p.I1693I 0.20 TCGA-AA-3984-01 11 92568168 92568168 A G FAT3 Missense_Mutation p.N3335S 0.22 probably_damaging(0.998) TCGA-AA-3984-01 11 92881829 92881829 G A SLC36A4 Silent p.G463G 0.08 TCGA-AA-3984-01 11 92887380 92887380 G T SLC36A4 Missense_Mutation p.F367L 0.25 deleterious(0.04) probably_damaging(0.954) TCGA-AA-3984-01 11 93127816 93127816 A G CCDC67 Silent p.K411K 0.33 TCGA-AA-3984-01 11 93432312 93432312 G T KIAA1731 Nonsense_Mutation p.E1412* 0.36 TCGA-AA-3984-01 11 93583598 93583598 G A VSTM5 Missense_Mutation p.A24V 0.18 tolerated(0.09) benign(0.001) TCGA-AA-3984-01 11 93845053 93845053 C T HEPHL1 Missense_Mutation p.A1158V 0.33 tolerated_low_confidence(0.08) benign(0.002) TCGA-AA-3984-01 11 94278729 94278729 G A FUT4 Missense_Mutation p.R477H 0.32 deleterious(0.02) possibly_damaging(0.546) TCGA-AA-3984-01 11 94280230 94280230 A G FUT4 3'UTR 0.21 TCGA-AA-3984-01 11 94280830 94280830 A C FUT4 3'UTR 0.23 TCGA-AA-3984-01 11 94533343 94533343 G A AMOTL1 Silent p.E329E 0.33 TCGA-AA-3984-01 11 94696423 94696423 G T CWC15 3'UTR 0.27 TCGA-AA-3984-01 11 94730461 94730461 T G KDM4D 5'UTR 0.45 TCGA-AA-3984-01 11 94801316 94801316 T C SRSF8 3'UTR 0.26 TCGA-AA-3984-01 11 94862081 94862081 A C ENDOD1 Missense_Mutation p.K281Q 0.27 tolerated(0.15) possibly_damaging(0.886) TCGA-AA-3984-01 11 94906404 94906404 T C SESN3 3'UTR 0.41 TCGA-AA-3984-01 11 96124019 96124019 A C JRKL Missense_Mutation p.K69T 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3984-01 11 96125218 96125218 G T JRKL Nonsense_Mutation p.E469* 0.29 TCGA-AA-3984-01 12 10010172 10010172 G A CLEC2B Silent p.C46C 0.23 TCGA-AA-3984-01 12 100200381 100200381 C A ANKS1B Missense_Mutation p.R157I 0.15 deleterious(0) possibly_damaging(0.875) TCGA-AA-3984-01 12 100491190 100491190 G A UHRF1BP1L Nonsense_Mutation p.R208* 0.08 TCGA-AA-3984-01 12 100704946 100704946 C A SCYL2 Nonsense_Mutation p.S202* 0.18 TCGA-AA-3984-01 12 101336195 101336195 G A ANO4 Missense_Mutation p.R78Q 0.27 deleterious(0.04) benign(0.196) TCGA-AA-3984-01 12 101560371 101560371 T C SLC5A8 Missense_Mutation p.D476G 0.20 deleterious(0.01) benign(0.007) TCGA-AA-3984-01 12 101603530 101603530 C T SLC5A8 Missense_Mutation p.A33T 0.22 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 12 10165460 10165460 G A CLEC12B Silent p.G56G 0.21 TCGA-AA-3984-01 12 10168294 10168294 C A CLEC12B Missense_Mutation p.F216L 0.46 tolerated(1) benign(0) TCGA-AA-3984-01 12 101684003 101684003 T G UTP20 Missense_Mutation p.F229C 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 101705568 101705568 C T UTP20 Missense_Mutation p.T768M 0.21 tolerated(0.12) benign(0.139) TCGA-AA-3984-01 12 101705815 101705815 G A UTP20 Silent p.E771E 0.22 TCGA-AA-3984-01 12 102038456 102038456 C A MYBPC1 Missense_Mutation p.L258I 0.17 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 12 102128772 102128772 T C SYCP3 Missense_Mutation p.T96A 0.25 tolerated(0.06) possibly_damaging(0.836) TCGA-AA-3984-01 12 102591443 102591443 C T PMCH Missense_Mutation p.D36N 0.29 tolerated(0.08) benign(0.136) TCGA-AA-3984-01 12 102796326 102796326 C T IGF1 Missense_Mutation p.A125T 0.06 tolerated(0.56) benign(0) TCGA-AA-3984-01 12 103249073 103249073 C A PAH Nonsense_Mutation p.E183* 0.06 TCGA-AA-3984-01 12 103306673 103306673 T C PAH Missense_Mutation p.T22A 0.22 tolerated(0.8) benign(0) TCGA-AA-3984-01 12 103352481 103352481 G T ASCL1 Missense_Mutation p.K153N 0.14 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 103695820 103695820 C A C12orf42 3'UTR 0.19 TCGA-AA-3984-01 12 10370725 10370725 C T GABARAPL1 Missense_Mutation p.P52S 0.06 deleterious(0) possibly_damaging(0.596) TCGA-AA-3984-01 12 103981146 103981146 A G STAB2 5'UTR 0.31 TCGA-AA-3984-01 12 104157305 104157305 G A STAB2 Silent p.K2508K 0.21 TCGA-AA-3984-01 12 104380955 104380955 T G TDG 3'UTR 0.24 TCGA-AA-3984-01 12 104390557 104390557 C T GLT8D2 Missense_Mutation p.D186N 0.20 tolerated(0.09) benign(0.382) TCGA-AA-3984-01 12 104474578 104474578 G A HCFC2 Missense_Mutation p.S246N 0.23 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 12 104698410 104698410 G A EID3 Missense_Mutation p.R233Q 0.21 tolerated(0.48) benign(0.037) TCGA-AA-3984-01 12 104714873 104714873 G T TXNRD1 Missense_Mutation p.D332Y 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 105260256 105260256 G T SLC41A2 Missense_Mutation p.L377I 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-AA-3984-01 12 105322070 105322070 C A SLC41A2 Missense_Mutation p.R79I 0.20 tolerated(0.07) benign(0.007) TCGA-AA-3984-01 12 105322150 105322150 T G SLC41A2 Missense_Mutation p.K52N 0.23 deleterious_low_confidence(0.01) benign(0.398) TCGA-AA-3984-01 12 105534707 105534707 G A KIAA1033 Missense_Mutation p.E531K 0.27 tolerated(0.08) possibly_damaging(0.837) TCGA-AA-3984-01 12 10572983 10572983 T C KLRC3 Missense_Mutation p.D56G 0.08 tolerated(0.24) benign(0.017) TCGA-AA-3984-01 12 10583626 10583626 A C KLRC2 3'UTR 0.08 TCGA-AA-3984-01 12 106633517 106633517 C T CKAP4 Missense_Mutation p.R365H 0.24 tolerated(0.58) benign(0.014) TCGA-AA-3984-01 12 106634007 106634007 C T CKAP4 Missense_Mutation p.E202K 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 106729450 106729450 A C TCP11L2 Missense_Mutation p.E269A 0.22 deleterious(0.01) benign(0.151) TCGA-AA-3984-01 12 106838301 106838301 C T POLR3B Silent p.I672I 0.30 TCGA-AA-3984-01 12 106848401 106848401 T G POLR3B Silent p.A735A 0.18 TCGA-AA-3984-01 12 107365220 107365220 A C C12orf23 3'UTR 0.16 TCGA-AA-3984-01 12 107391315 107391315 G A CRY1 Silent p.I481I 0.09 TCGA-AA-3984-01 12 108035941 108035941 T G BTBD11 Missense_Mutation p.I972S 0.24 deleterious(0) probably_damaging(0.947) TCGA-AA-3984-01 12 108170368 108170368 G T ASCL4 3'UTR 0.08 TCGA-AA-3984-01 12 108686496 108686496 C T CMKLR1 Missense_Mutation p.A82T 0.20 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 12 109577201 109577201 G T ACACB Splice_Site 0.08 TCGA-AA-3984-01 12 109604733 109604733 G T ACACB Missense_Mutation p.D241Y 0.20 deleterious(0.01) benign(0.129) TCGA-AA-3984-01 12 10961699 10961699 C A TAS2R9 3'UTR 0.20 TCGA-AA-3984-01 12 10962684 10962684 G T TAS2R9 5'UTR 0.21 TCGA-AA-3984-01 12 109723257 109723257 G A FOXN4 Silent p.F251F 0.22 TCGA-AA-3984-01 12 10978514 10978514 G T TAS2R10 Missense_Mutation p.L119I 0.13 deleterious(0.03) possibly_damaging(0.859) TCGA-AA-3984-01 12 109889274 109889274 C T KCTD10 3'UTR 0.21 TCGA-AA-3984-01 12 110240886 110240886 C T TRPV4 Missense_Mutation p.D208N 0.12 tolerated(0.09) benign(0.006) TCGA-AA-3984-01 12 110471682 110471682 A T ANKRD13A Missense_Mutation p.N477Y 0.08 deleterious(0.02) benign(0.209) TCGA-AA-3984-01 12 110566900 110566900 C A IFT81 Missense_Mutation p.L132I 0.18 tolerated(0.05) possibly_damaging(0.465) TCGA-AA-3984-01 12 110581215 110581215 A C IFT81 Silent p.I270I 0.24 TCGA-AA-3984-01 12 110874924 110874924 G T ARPC3 Missense_Mutation p.L73I 0.11 deleterious(0) possibly_damaging(0.482) TCGA-AA-3984-01 12 111089070 111089070 C A HVCN1 Missense_Mutation p.G199C 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 12 11138589 11138589 G A TAS2R50 Missense_Mutation p.L291F 0.17 deleterious(0.03) benign(0.429) TCGA-AA-3984-01 12 11138877 11138877 A C TAS2R50 Missense_Mutation p.F195V 0.06 tolerated(0.19) benign(0.291) TCGA-AA-3984-01 12 111731268 111731268 C T CUX2 Missense_Mutation p.S152L 0.27 tolerated(0.12) benign(0.022) TCGA-AA-3984-01 12 112119571 112119571 C A BRAP Missense_Mutation p.D105Y 0.22 deleterious(0.02) benign(0.013) TCGA-AA-3984-01 12 112528533 112528533 G A NAA25 Nonsense_Mutation p.R94* 0.22 TCGA-AA-3984-01 12 112600232 112600232 G A HECTD4 Missense_Mutation p.R4260C 0.10 probably_damaging(0.983) TCGA-AA-3984-01 12 11286391 11286391 C T TAS2R30 Silent p.E151E 0.21 TCGA-AA-3984-01 12 112924485 112924485 G A PTPN11 Intron 0.35 TCGA-AA-3984-01 12 113285583 113285583 G T RPH3A Nonsense_Mutation p.E56* 0.22 TCGA-AA-3984-01 12 113357227 113357227 G A OAS1 Intron 0.35 TCGA-AA-3984-01 12 113400570 113400570 C A OAS3 Missense_Mutation p.F649L 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 113425046 113425046 C A OAS2 Missense_Mutation p.F127L 0.25 tolerated(1) benign(0.001) TCGA-AA-3984-01 12 113448232 113448232 G T OAS2 Missense_Mutation p.E701D 0.22 tolerated(0.13) benign(0.115) TCGA-AA-3984-01 12 117155539 117155539 G A C12orf49 3'UTR 0.36 TCGA-AA-3984-01 12 117627133 117627133 C T FBXO21 Missense_Mutation p.D92N 0.06 tolerated(0.22) benign(0.013) TCGA-AA-3984-01 12 117665300 117665300 G T NOS1 Silent p.S1218S 0.21 TCGA-AA-3984-01 12 117768961 117768961 G A NOS1 5'Flank 0.24 TCGA-AA-3984-01 12 117962937 117962937 G A KSR2 Missense_Mutation p.R647C 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 118457550 118457550 G T RFC5 Nonsense_Mutation p.E82* 0.14 TCGA-AA-3984-01 12 118462685 118462685 T G RFC5 Missense_Mutation p.F151V 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 12 118615027 118615027 A C TAOK3 Missense_Mutation p.I558M 0.20 tolerated(0.23) benign(0.002) TCGA-AA-3984-01 12 118627762 118627762 A C TAOK3 Intron 0.11 TCGA-AA-3984-01 12 119563252 119563252 C A SRRM4 Missense_Mutation p.S194R 0.20 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 12 119583193 119583193 G T SRRM4 Missense_Mutation p.G260V 0.25 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-AA-3984-01 12 120222026 120222026 C T CIT Intron 0.30 TCGA-AA-3984-01 12 120260630 120260630 G A CIT Missense_Mutation p.R369C 0.18 deleterious(0) possibly_damaging(0.684) TCGA-AA-3984-01 12 120295497 120295497 C T CIT Missense_Mutation p.D82N 0.08 tolerated(0.21) benign(0.004) TCGA-AA-3984-01 12 120535068 120535068 C T RAB35 Missense_Mutation p.R196Q 0.07 tolerated(0.48) benign(0.002) TCGA-AA-3984-01 12 120592799 120592799 A C GCN1L1 Missense_Mutation p.S1226A 0.16 benign(0.012) TCGA-AA-3984-01 12 120606036 120606036 A C GCN1L1 Missense_Mutation p.F530V 0.26 probably_damaging(0.998) TCGA-AA-3984-01 12 120651675 120651675 C T PXN Silent p.T507T 0.09 TCGA-AA-3984-01 12 120750519 120750519 C T SIRT4 Missense_Mutation p.A253V 0.12 deleterious(0.03) possibly_damaging(0.783) TCGA-AA-3984-01 12 121088474 121088474 C A CABP1 Intron 0.20 TCGA-AA-3984-01 12 121768485 121768485 G T ANAPC5 Intron 0.16 TCGA-AA-3984-01 12 121790162 121790162 C T ANAPC5 5'UTR 0.10 TCGA-AA-3984-01 12 121970784 121970784 G T KDM2B Silent p.I286I 0.24 TCGA-AA-3984-01 12 122243928 122243928 T C SETD1B Missense_Mutation p.V154A 0.22 possibly_damaging(0.866) TCGA-AA-3984-01 12 122260694 122260694 G A SETD1B Silent p.V1360V 0.17 TCGA-AA-3984-01 12 122398590 122398590 C T WDR66 Nonsense_Mutation p.R745* 0.18 TCGA-AA-3984-01 12 122437640 122437640 G A WDR66 Missense_Mutation p.E1009K 0.19 deleterious(0) possibly_damaging(0.769) TCGA-AA-3984-01 12 122441626 122441626 C A WDR66 Missense_Mutation p.L1136I 0.08 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 12 122801300 122801300 C A CLIP1 Nonsense_Mutation p.E1157* 0.19 TCGA-AA-3984-01 12 122832001 122832001 C T CLIP1 Missense_Mutation p.R476H 0.14 tolerated(0.46) probably_damaging(0.992) TCGA-AA-3984-01 12 122985369 122985369 A C ZCCHC8 Missense_Mutation p.F7V 0.17 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 12 122990090 122990090 C T RSRC2 Missense_Mutation p.G430E 0.16 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 12 123042011 123042011 G A KNTC1 Nonsense_Mutation p.W451* 0.18 TCGA-AA-3984-01 12 123052912 123052912 G A KNTC1 Missense_Mutation p.R570Q 0.21 deleterious(0) possibly_damaging(0.831) TCGA-AA-3984-01 12 123089602 123089602 G T KNTC1 Missense_Mutation p.R1785I 0.10 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 12 123186706 123186706 C A HCAR2 3'UTR 0.24 TCGA-AA-3984-01 12 123444214 123444214 G A ABCB9 Missense_Mutation p.A190V 0.20 tolerated(1) benign(0.002) TCGA-AA-3984-01 12 123463486 123463486 G A OGFOD2 Missense_Mutation p.E180K 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 12 123497161 123497161 G A PITPNM2 Silent p.I138I 0.22 TCGA-AA-3984-01 12 123641388 123641388 T G MPHOSPH9 Missense_Mutation p.K1021T 0.16 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 12 123746254 123746254 A G CDK2AP1 3'UTR 0.12 TCGA-AA-3984-01 12 124081293 124081293 G T TMED2 3'UTR 0.19 TCGA-AA-3984-01 12 124081337 124081337 A C TMED2 3'UTR 0.19 TCGA-AA-3984-01 12 124144728 124144728 T G GTF2H3 Missense_Mutation p.I291M 0.17 tolerated(0.16) benign(0.175) TCGA-AA-3984-01 12 124265693 124265693 G T DNAH10 Nonsense_Mutation p.E169* 0.16 TCGA-AA-3984-01 12 124333344 124333344 G A DNAH10 Missense_Mutation p.R1888Q 0.22 probably_damaging(1) TCGA-AA-3984-01 12 124349227 124349227 G A DNAH10 Missense_Mutation p.A2214T 0.28 probably_damaging(0.977) TCGA-AA-3984-01 12 124359953 124359953 C T DNAH10 Missense_Mutation p.S2587L 0.20 probably_damaging(0.996) TCGA-AA-3984-01 12 124414243 124414243 G A DNAH10 Silent p.T4065T 0.25 TCGA-AA-3984-01 12 124499231 124499231 G A ZNF664 3'UTR 0.08 TCGA-AA-3984-01 12 125444856 125444856 A C DHX37 Splice_Site p.X719_splice 0.23 TCGA-AA-3984-01 12 125558467 125558467 A G AACS Missense_Mutation p.D60G 0.24 tolerated(0.1) possibly_damaging(0.491) TCGA-AA-3984-01 12 12790516 12790516 T C CREBL2 Missense_Mutation p.C76R 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 12 129180507 129180507 G A TMEM132C Silent p.P596P 0.20 TCGA-AA-3984-01 12 129558505 129558505 T C TMEM132D Missense_Mutation p.D1072G 0.20 deleterious(0.03) benign(0.067) TCGA-AA-3984-01 12 130648151 130648151 G A FZD10 Missense_Mutation p.E222K 0.22 tolerated(0.25) benign(0.023) TCGA-AA-3984-01 12 130648839 130648839 A G FZD10 Missense_Mutation p.Y451C 0.15 deleterious(0) probably_damaging(0.943) TCGA-AA-3984-01 12 130649852 130649852 T G FZD10 3'UTR 0.14 TCGA-AA-3984-01 12 130649884 130649884 A G FZD10 3'UTR 0.19 TCGA-AA-3984-01 12 130650188 130650188 G T FZD10 3'UTR 0.22 TCGA-AA-3984-01 12 130890723 130890723 A C RIMBP2 Missense_Mutation p.F997L 0.25 deleterious(0) possibly_damaging(0.755) TCGA-AA-3984-01 12 130935855 130935855 G A RIMBP2 Missense_Mutation p.A113V 0.12 tolerated(1) benign(0.001) TCGA-AA-3984-01 12 13139961 13139961 G A HEBP1 Intron 0.28 TCGA-AA-3984-01 12 131487757 131487757 G A GPR133 Missense_Mutation p.D352N 0.22 tolerated(0.08) benign(0.001) TCGA-AA-3984-01 12 131593323 131593323 G A GPR133 Missense_Mutation p.A648T 0.16 tolerated(0.06) benign(0.126) TCGA-AA-3984-01 12 132240012 132240012 C T SFSWAP Silent p.G512G 0.52 TCGA-AA-3984-01 12 132394379 132394379 G A ULK1 Splice_Site p.X242_splice 0.09 TCGA-AA-3984-01 12 13240110 13240110 A G GSG1 Missense_Mutation p.V218A 0.23 tolerated(0.75) benign(0.001) TCGA-AA-3984-01 12 132490710 132490710 G A EP400 Missense_Mutation p.D997N 0.22 unknown(0) TCGA-AA-3984-01 12 132522524 132522524 T G EP400 Silent p.V2030V 0.06 TCGA-AA-3984-01 12 132537749 132537749 C T EP400 Nonsense_Mutation p.R2485* 0.26 TCGA-AA-3984-01 12 132834385 132834385 G A GALNT9 Missense_Mutation p.R268C 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-AA-3984-01 12 133198667 133198667 G A P2RX2 3'Flank 0.27 TCGA-AA-3984-01 12 133250289 133250289 C A POLE Missense_Mutation p.V411L 0.43 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 133438140 133438140 G A CHFR Missense_Mutation p.L234F 0.18 tolerated(0.61) benign(0.009) TCGA-AA-3984-01 12 133502311 133502311 C A ZNF605 Missense_Mutation p.R556I 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 133682657 133682657 G T ZNF140 Missense_Mutation p.R265I 0.20 deleterious(0.01) possibly_damaging(0.904) TCGA-AA-3984-01 12 133733564 133733564 G A ZNF10 3'UTR 0.16 TCGA-AA-3984-01 12 13761657 13761657 G T GRIN2B Silent p.I630I 0.08 TCGA-AA-3984-01 12 14650704 14650704 C T ATF7IP Silent p.R1170R 0.06 TCGA-AA-3984-01 12 14942020 14942020 G A WBP11 Missense_Mutation p.P453S 0.20 deleterious_low_confidence(0.03) unknown(0) TCGA-AA-3984-01 12 14975902 14975902 A G C12orf60 Silent p.R11R 0.21 TCGA-AA-3984-01 12 15654588 15654588 C T PTPRO Silent p.I232I 0.17 TCGA-AA-3984-01 12 16510612 16510612 A G MGST1 Missense_Mutation p.D67G 0.24 tolerated(0.09) benign(0.014) TCGA-AA-3984-01 12 18234254 18234254 C A RERGL Missense_Mutation p.M163I 0.21 tolerated(0.37) benign(0.004) TCGA-AA-3984-01 12 18491360 18491360 G A PIK3C2G Missense_Mutation p.E425K 0.15 tolerated(0.8) benign(0.001) TCGA-AA-3984-01 12 18841083 18841083 C A PLCZ1 Nonsense_Mutation p.E511* 0.12 TCGA-AA-3984-01 12 18849173 18849173 T G PLCZ1 Missense_Mutation p.K401T 0.18 tolerated(0.41) benign(0.013) TCGA-AA-3984-01 12 18876418 18876418 C T PLCZ1 Missense_Mutation p.R65Q 0.23 tolerated(0.07) possibly_damaging(0.554) TCGA-AA-3984-01 12 1937323 1937323 G A LRTM2 Silent p.A3A 0.24 TCGA-AA-3984-01 12 1995404 1995404 G A CACNA2D4 Silent p.F326F 0.21 TCGA-AA-3984-01 12 20803484 20803484 G T PDE3A Nonsense_Mutation p.E959* 0.22 TCGA-AA-3984-01 12 21069250 21069250 C A SLCO1B3 3'UTR 0.09 TCGA-AA-3984-01 12 21168708 21168708 G A SLCO1B7 Missense_Mutation p.E27K 0.18 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 12 21355619 21355619 G T SLCO1B1 Nonsense_Mutation p.G444* 0.19 TCGA-AA-3984-01 12 21370112 21370112 C A SLCO1B1 Silent p.A519A 0.19 TCGA-AA-3984-01 12 21450405 21450405 G T SLCO1A2 Silent p.I336I 0.32 TCGA-AA-3984-01 12 21472313 21472313 G A SLCO1A2 Intron 0.28 TCGA-AA-3984-01 12 21487562 21487562 C A SLCO1A2 Missense_Mutation p.R7I 0.06 tolerated(0.2) benign(0.005) TCGA-AA-3984-01 12 21620426 21620426 G A PYROXD1 Nonsense_Mutation p.W376* 0.22 TCGA-AA-3984-01 12 21661410 21661410 T G GOLT1B Missense_Mutation p.F71V 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 21680108 21680108 C A C12orf39 Missense_Mutation p.L43I 0.12 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 12 21693417 21693417 C T GYS2 Missense_Mutation p.R579H 0.46 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 12 21799898 21799898 C T LDHB Missense_Mutation p.G61E 0.15 deleterious(0.01) benign(0.397) TCGA-AA-3984-01 12 21918497 21918497 T G KCNJ8 3'UTR 0.19 TCGA-AA-3984-01 12 21960410 21960410 G A ABCC9 Missense_Mutation p.A1440V 0.10 deleterious(0.02) benign(0.213) TCGA-AA-3984-01 12 21962813 21962813 T C ABCC9 Missense_Mutation p.M1430V 0.46 tolerated(1) benign(0.002) TCGA-AA-3984-01 12 2224704 2224704 G A CACNA1C Missense_Mutation p.E122K 0.17 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 12 22796773 22796773 G T ETNK1 Missense_Mutation p.R167I 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 23689548 23689548 T G SOX5 Missense_Mutation p.Q609H 0.09 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 12 24365411 24365411 C A MIR920 RNA 0.17 TCGA-AA-3984-01 12 25297343 25297343 C A CASC1 Nonsense_Mutation p.E320* 0.16 TCGA-AA-3984-01 12 25297374 25297374 T G CASC1 Missense_Mutation p.Q309H 0.21 tolerated(0.08) possibly_damaging(0.631) TCGA-AA-3984-01 12 25356907 25356907 C A LYRM5 Missense_Mutation p.S6Y 0.41 deleterious(0.01) possibly_damaging(0.601) TCGA-AA-3984-01 12 2558185 2558185 C T CACNA1C Missense_Mutation p.A174V 0.20 deleterious(0.02) benign(0.236) TCGA-AA-3984-01 12 2566734 2566735 - T CACNA1C Frame_Shift_Ins p.S209* 0.16 TCGA-AA-3984-01 12 26714877 26714877 G A ITPR2 Missense_Mutation p.R1547C 0.32 deleterious(0) possibly_damaging(0.847) TCGA-AA-3984-01 12 26752933 26752933 A C ITPR2 Missense_Mutation p.F1263C 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 26775334 26775334 C A ITPR2 Nonsense_Mutation p.E1043* 0.19 TCGA-AA-3984-01 12 26834835 26834835 T G ITPR2 Missense_Mutation p.N461H 0.20 tolerated(0.12) benign(0.057) TCGA-AA-3984-01 12 27066482 27066482 C A ASUN Missense_Mutation p.K571N 0.08 tolerated(0.08) benign(0.194) TCGA-AA-3984-01 12 274701 274701 T C IQSEC3 Splice_Site p.X937_splice 0.12 TCGA-AA-3984-01 12 27521312 27521312 G A ARNTL2 Missense_Mutation p.R50Q 0.14 deleterious(0) benign(0.084) TCGA-AA-3984-01 12 27556443 27556443 G T ARNTL2 Missense_Mutation p.D519Y 0.18 deleterious(0.02) possibly_damaging(0.873) TCGA-AA-3984-01 12 27628579 27628579 G T SMCO2 Nonsense_Mutation p.E143* 0.25 TCGA-AA-3984-01 12 2786832 2786832 C T CACNA1C Intron 0.19 TCGA-AA-3984-01 12 27915699 27915699 C T MANSC4 Missense_Mutation p.R332H 0.07 tolerated(0.54) benign(0) TCGA-AA-3984-01 12 27916026 27916026 A G MANSC4 Missense_Mutation p.F223S 0.23 tolerated(0.45) benign(0.165) TCGA-AA-3984-01 12 27916178 27916178 C A MANSC4 Missense_Mutation p.E172D 0.07 tolerated(0.1) benign(0.229) TCGA-AA-3984-01 12 27944794 27944794 T C KLHL42 Silent p.C342C 0.19 TCGA-AA-3984-01 12 28515376 28515376 A G CCDC91 Silent p.K194K 0.20 TCGA-AA-3984-01 12 29494706 29494706 G A ERGIC2 Silent p.C344C 0.14 TCGA-AA-3984-01 12 29494711 29494711 T A ERGIC2 Missense_Mutation p.I343F 0.23 tolerated(0.2) benign(0.005) TCGA-AA-3984-01 12 29598225 29598225 A G OVCH1 Missense_Mutation p.V956A 0.19 deleterious(0.01) possibly_damaging(0.754) TCGA-AA-3984-01 12 29624802 29624802 C T OVCH1 Missense_Mutation p.D597N 0.28 tolerated(0.68) benign(0.041) TCGA-AA-3984-01 12 29624866 29624866 G A OVCH1 Silent p.I575I 0.11 TCGA-AA-3984-01 12 29639218 29639218 G T OVCH1 Missense_Mutation p.S319Y 0.15 tolerated(0.43) possibly_damaging(0.775) TCGA-AA-3984-01 12 29649520 29649520 C A OVCH1 Missense_Mutation p.R51I 0.13 deleterious(0.01) probably_damaging(0.935) TCGA-AA-3984-01 12 29786134 29786134 G T TMTC1 Silent p.I358I 0.19 TCGA-AA-3984-01 12 29904596 29904596 T C TMTC1 Intron 0.28 TCGA-AA-3984-01 12 29904673 29904673 G A TMTC1 Silent p.C288C 0.19 TCGA-AA-3984-01 12 304440 304440 G A SLC6A12 Silent p.C460C 0.22 TCGA-AA-3984-01 12 30837302 30837302 C T IPO8 Missense_Mutation p.E86K 0.08 deleterious(0) probably_damaging(0.978) TCGA-AA-3984-01 12 30863230 30863230 C T CAPRIN2 Missense_Mutation p.R947Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 12 31605076 31605076 G T DENND5B Missense_Mutation p.S476Y 0.23 deleterious(0.02) benign(0.285) TCGA-AA-3984-01 12 32136105 32136105 C T KIAA1551 Missense_Mutation p.S739L 0.08 deleterious(0.04) possibly_damaging(0.905) TCGA-AA-3984-01 12 32138281 32138281 G A KIAA1551 Silent p.S1464S 0.18 TCGA-AA-3984-01 12 32480519 32480519 C T BICD1 Missense_Mutation p.A377V 0.24 deleterious(0.01) possibly_damaging(0.826) TCGA-AA-3984-01 12 32481355 32481355 G T BICD1 Missense_Mutation p.A656S 0.26 tolerated(0.49) probably_damaging(0.922) TCGA-AA-3984-01 12 32530522 32530522 C T BICD1 Silent p.C963C 0.24 TCGA-AA-3984-01 12 32791722 32791722 C T FGD4 Missense_Mutation p.A679V 0.15 deleterious(0.01) probably_damaging(0.919) TCGA-AA-3984-01 12 33592488 33592488 T C SYT10 5'UTR 0.15 TCGA-AA-3984-01 12 38714302 38714302 C A ALG10B Missense_Mutation p.L237I 0.07 tolerated(0.32) possibly_damaging(0.481) TCGA-AA-3984-01 12 3931093 3931093 C T PARP11 Missense_Mutation p.R165Q 0.18 tolerated(0.6) benign(0.029) TCGA-AA-3984-01 12 3939061 3939061 A G PARP11 Missense_Mutation p.F48L 0.21 deleterious(0.02) probably_damaging(0.928) TCGA-AA-3984-01 12 39688263 39688263 T C KIF21A Missense_Mutation p.D1663G 0.29 deleterious_low_confidence(0.05) benign(0.023) TCGA-AA-3984-01 12 39967561 39967561 C T ABCD2 Missense_Mutation p.A654T 0.24 tolerated(0.4) benign(0.033) TCGA-AA-3984-01 12 402279 402279 C T KDM5A Silent p.K1504K 0.13 TCGA-AA-3984-01 12 40626106 40626106 G T LRRK2 Nonsense_Mutation p.E90* 0.19 TCGA-AA-3984-01 12 40959335 40959335 G A MUC19 3'UTR 0.08 TCGA-AA-3984-01 12 41831677 41831677 C T PDZRN4 Intron 0.20 TCGA-AA-3984-01 12 41966886 41966886 A G PDZRN4 Missense_Mutation p.K769E 0.24 tolerated(0.33) benign(0.278) TCGA-AA-3984-01 12 41967054 41967054 G A PDZRN4 Missense_Mutation p.E825K 0.25 tolerated(0.25) benign(0.306) TCGA-AA-3984-01 12 42707740 42707740 G A ZCRB1 Missense_Mutation p.R128C 0.20 deleterious(0.01) benign(0.059) TCGA-AA-3984-01 12 42858963 42858963 A G PRICKLE1 Silent p.C291C 0.20 TCGA-AA-3984-01 12 42860178 42860178 A C PRICKLE1 Missense_Mutation p.I198S 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 12 43833714 43833714 C A ADAMTS20 Nonsense_Mutation p.E817* 0.22 TCGA-AA-3984-01 12 44148691 44148691 C A PUS7L Nonsense_Mutation p.E120* 0.25 TCGA-AA-3984-01 12 44162037 44162037 A G IRAK4 Silent p.K41K 0.07 TCGA-AA-3984-01 12 44166753 44166753 A G IRAK4 Missense_Mutation p.T177A 0.24 deleterious(0) possibly_damaging(0.457) TCGA-AA-3984-01 12 44176244 44176244 C T IRAK4 Missense_Mutation p.A359V 0.15 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 12 44770492 44770492 C T TMEM117 Missense_Mutation p.R295C 0.10 tolerated(0.25) benign(0.191) TCGA-AA-3984-01 12 44902732 44902732 G A NELL2 Silent p.C862C 0.22 TCGA-AA-3984-01 12 4543337 4543337 G A FGF6 3'UTR 0.12 TCGA-AA-3984-01 12 45567976 45567976 T C PLEKHA8P1 RNA 0.25 TCGA-AA-3984-01 12 45695863 45695863 G A ANO6 Missense_Mutation p.R67Q 0.20 tolerated(0.19) benign(0.002) TCGA-AA-3984-01 12 45822993 45822993 C A ANO6 Missense_Mutation p.L899I 0.24 tolerated(0.1) probably_damaging(0.997) TCGA-AA-3984-01 12 45833535 45833535 C T ANO6 Silent p.C868C 0.18 TCGA-AA-3984-01 12 46315876 46315876 C A SCAF11 Missense_Mutation p.K1449N 0.05 deleterious(0) possibly_damaging(0.874) TCGA-AA-3984-01 12 46320854 46320854 C A SCAF11 Missense_Mutation p.R877I 0.17 deleterious(0) possibly_damaging(0.494) TCGA-AA-3984-01 12 46325298 46325298 C T SCAF11 Missense_Mutation p.E278K 0.19 deleterious(0.03) benign(0.249) TCGA-AA-3984-01 12 4634451 4634451 C A C12orf4 Missense_Mutation p.D233Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 12 4643373 4643373 C A C12orf4 Nonsense_Mutation p.E92* 0.26 TCGA-AA-3984-01 12 4665525 4665525 C T RAD51AP1 Missense_Mutation p.S260L 0.11 tolerated(0.12) benign(0.111) TCGA-AA-3984-01 12 4721823 4721823 C T DYRK4 Silent p.S420S 0.10 TCGA-AA-3984-01 12 47628897 47628897 C T PCED1B Silent p.F17F 0.17 TCGA-AA-3984-01 12 48095371 48095371 C T RPAP3 Missense_Mutation p.R57Q 0.09 deleterious(0) benign(0.043) TCGA-AA-3984-01 12 48111918 48111918 C T ENDOU Missense_Mutation p.A80T 0.07 tolerated(0.25) benign(0.001) TCGA-AA-3984-01 12 4835772 4835772 C T GALNT8 Missense_Mutation p.R96C 0.12 tolerated(0.16) benign(0.328) TCGA-AA-3984-01 12 48368478 48368478 T C COL2A1 Missense_Mutation p.T1352A 0.08 unknown(0) TCGA-AA-3984-01 12 48442766 48442766 A C SENP1 Missense_Mutation p.F519L 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 12 48490179 48490179 C T SENP1 Missense_Mutation p.R56Q 0.23 tolerated_low_confidence(0.28) benign(0.001) TCGA-AA-3984-01 12 4870217 4870217 G A GALNT8 Missense_Mutation p.A423T 0.09 tolerated(0.39) benign(0.014) TCGA-AA-3984-01 12 48886750 48886750 A G C12orf54 Missense_Mutation p.T72A 0.28 tolerated(0.1) benign(0.106) TCGA-AA-3984-01 12 4919789 4919789 G A KCNA6 Silent p.E194E 0.07 TCGA-AA-3984-01 12 49230566 49230566 C T DDX23 Missense_Mutation p.R341H 0.27 tolerated(0.08) benign(0.411) TCGA-AA-3984-01 12 4923647 4923647 G A KCNA6 3'UTR 0.16 TCGA-AA-3984-01 12 493230 493230 C T KDM5A Silent p.E111E 0.24 TCGA-AA-3984-01 12 49523033 49523033 G A TUBA1B Missense_Mutation p.R123C 0.22 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-AA-3984-01 12 49580101 49580101 G A TUBA1A Missense_Mutation p.R123C 0.18 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-AA-3984-01 12 50044531 50044531 C T FMNL3 Missense_Mutation p.R643H 0.07 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 12 50045069 50045069 C T FMNL3 Missense_Mutation p.R560Q 0.16 tolerated(0.09) probably_damaging(0.988) TCGA-AA-3984-01 12 5025609 5025609 A C KCNA1 3'UTR 0.25 TCGA-AA-3984-01 12 5025773 5025773 C T KCNA1 3'UTR 0.24 TCGA-AA-3984-01 12 50570879 50570879 G A LIMA1 Missense_Mutation p.R751W 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 50571823 50571823 C A LIMA1 Missense_Mutation p.R436I 0.09 deleterious(0.04) benign(0.128) TCGA-AA-3984-01 12 50642471 50642471 C A LIMA1 Nonsense_Mutation p.E22* 0.33 TCGA-AA-3984-01 12 50745356 50745356 G A FAM186A Silent p.F1753F 0.23 TCGA-AA-3984-01 12 51122406 51122406 G A DIP2B Missense_Mutation p.A1196T 0.29 tolerated(0.12) probably_damaging(0.943) TCGA-AA-3984-01 12 51173993 51173993 G A ATF1 Missense_Mutation p.G22E 0.23 tolerated(0.07) benign(0.439) TCGA-AA-3984-01 12 51236768 51236768 C T TMPRSS12 Silent p.S7S 0.29 TCGA-AA-3984-01 12 51281402 51281402 G T TMPRSS12 3'UTR 0.19 TCGA-AA-3984-01 12 51389534 51389534 G A SLC11A2 Nonsense_Mutation p.R319* 0.22 TCGA-AA-3984-01 12 51457702 51457702 C T CSRNP2 Missense_Mutation p.E487K 0.07 deleterious_low_confidence(0) benign(0.049) TCGA-AA-3984-01 12 52159702 52159702 G A SCN8A Missense_Mutation p.R931Q 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 12 52284460 52284460 C T ANKRD33 Missense_Mutation p.R244W 0.55 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 12 52790707 52790707 A G KRT82 Missense_Mutation p.I343T 0.22 deleterious(0.04) possibly_damaging(0.782) TCGA-AA-3984-01 12 52881297 52881297 A C KRT6A 3'UTR 0.35 TCGA-AA-3984-01 12 52886516 52886516 C T KRT6A Missense_Mutation p.D153N 0.22 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 12 52887017 52887017 G T KRT6A 5'UTR 0.09 TCGA-AA-3984-01 12 52911507 52911507 T C KRT5 Missense_Mutation p.D320G 0.21 deleterious(0) probably_damaging(0.974) TCGA-AA-3984-01 12 52994910 52994910 C T KRT72 Silent p.P109P 0.25 TCGA-AA-3984-01 12 53044223 53044223 C T KRT2 Missense_Mutation p.D234N 0.21 tolerated(0.5) benign(0.045) TCGA-AA-3984-01 12 53185017 53185017 C T KRT3 Missense_Mutation p.R503H 0.20 deleterious(0.03) benign(0.236) TCGA-AA-3984-01 12 53207557 53207557 T A KRT4 Nonsense_Mutation p.K96* 0.28 TCGA-AA-3984-01 12 53207922 53207922 C A KRT4 5'UTR 0.10 TCGA-AA-3984-01 12 53216827 53216827 C T KRT79 Missense_Mutation p.R447H 0.23 deleterious(0.01) probably_damaging(0.934) TCGA-AA-3984-01 12 53446252 53446252 G A TENC1 Silent p.A76A 0.21 TCGA-AA-3984-01 12 53494608 53494608 G A IGFBP6 Silent p.Q149Q 0.20 TCGA-AA-3984-01 12 53594136 53594136 G T ITGB7 Missense_Mutation p.A31D 0.17 deleterious_low_confidence(0) benign(0.206) TCGA-AA-3984-01 12 53609098 53609098 C T RARG Missense_Mutation p.E152K 0.22 tolerated(0.09) possibly_damaging(0.625) TCGA-AA-3984-01 12 53722189 53722189 C T SP7 Missense_Mutation p.R346H 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 53911100 53911100 C T ATF7 Missense_Mutation p.A425T 0.25 tolerated(0.33) benign(0.008) TCGA-AA-3984-01 12 54059045 54059045 A G ATP5G2 3'UTR 0.22 TCGA-AA-3984-01 12 54385592 54385592 G T RP11-834C11.12 Intron 0.20 TCGA-AA-3984-01 12 54396628 54396628 T G HOXC9 3'UTR 0.30 TCGA-AA-3984-01 12 54428070 54428070 G A HOXC5 Missense_Mutation p.G155S 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 12 54731079 54731079 T G COPZ1 Intron 0.24 TCGA-AA-3984-01 12 54920455 54920455 G A NCKAP1L Missense_Mutation p.R767H 0.26 deleterious(0.04) possibly_damaging(0.806) TCGA-AA-3984-01 12 54963398 54963398 T C PDE1B Splice_Site p.X159_splice 0.20 TCGA-AA-3984-01 12 55028602 55028602 G T LACRT Missense_Mutation p.F8L 0.10 tolerated_low_confidence(0.43) unknown(0) TCGA-AA-3984-01 12 55356259 55356259 G A TESPA1 Missense_Mutation p.R475W 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.799) TCGA-AA-3984-01 12 55356615 55356615 G A TESPA1 Missense_Mutation p.S356F 0.24 deleterious_low_confidence(0.04) benign(0.048) TCGA-AA-3984-01 12 55420221 55420221 G A NEUROD4 5'UTR 0.17 TCGA-AA-3984-01 12 55422934 55422934 C A NEUROD4 3'UTR 0.24 TCGA-AA-3984-01 12 55523706 55523706 C A OR9K2 Missense_Mutation p.L52I 0.37 deleterious(0.02) benign(0.242) TCGA-AA-3984-01 12 55820873 55820873 C T OR6C76 Missense_Mutation p.A279V 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.651) TCGA-AA-3984-01 12 55846187 55846187 T G OR6C2 Missense_Mutation p.F64V 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.61) TCGA-AA-3984-01 12 55846297 55846297 C A OR6C2 Missense_Mutation p.F100L 0.28 deleterious_low_confidence(0.04) benign(0.212) TCGA-AA-3984-01 12 55886399 55886399 T G OR6C68 Missense_Mutation p.L80V 0.47 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-AA-3984-01 12 56077753 56077753 G A METTL7B Missense_Mutation p.E219K 0.08 tolerated(0.37) benign(0.005) TCGA-AA-3984-01 12 56094925 56094925 C T ITGA7 Missense_Mutation p.R143Q 0.15 deleterious(0.02) possibly_damaging(0.617) TCGA-AA-3984-01 12 56105885 56105885 C A ITGA7 5'Flank 0.08 TCGA-AA-3984-01 12 56120004 56120004 T G CD63 Missense_Mutation p.K156N 0.18 tolerated(1) benign(0.002) TCGA-AA-3984-01 12 56231653 56231653 C T MMP19 Missense_Mutation p.R345Q 0.08 deleterious(0.02) possibly_damaging(0.892) TCGA-AA-3984-01 12 56363259 56363259 G A CDK2 Missense_Mutation p.V163M 0.12 deleterious(0) possibly_damaging(0.765) TCGA-AA-3984-01 12 56956281 56956281 A C RBMS2 Silent p.G49G 0.22 TCGA-AA-3984-01 12 57058076 57058076 C T PTGES3 3'UTR 0.29 TCGA-AA-3984-01 12 57180950 57180950 A C HSD17B6 Missense_Mutation p.N260H 0.09 deleterious(0.04) possibly_damaging(0.687) TCGA-AA-3984-01 12 5722101 5722101 T C ANO2 Missense_Mutation p.Y651C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 57598195 57598195 C T LRP1 Missense_Mutation p.R3652W 0.20 probably_damaging(0.993) TCGA-AA-3984-01 12 57861838 57861838 G A GLI1 Missense_Mutation p.R380Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 12 57868660 57868660 C A ARHGAP9 Missense_Mutation p.R550I 0.19 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 12 57872374 57872374 G A ARHGAP9 Silent p.S161S 0.29 TCGA-AA-3984-01 12 57920172 57920172 G A MBD6 Splice_Site p.X474_splice 0.16 TCGA-AA-3984-01 12 57929610 57929610 T G DCTN2 Missense_Mutation p.S47R 0.21 deleterious(0) probably_damaging(0.95) TCGA-AA-3984-01 12 58009471 58009471 A C ARHGEF25 Silent p.G444G 0.19 TCGA-AA-3984-01 12 58010157 58010157 G T ARHGEF25 Missense_Mutation p.R543I 0.22 deleterious(0.03) benign(0.283) TCGA-AA-3984-01 12 58157522 58157522 G A CYP27B1 Missense_Mutation p.R429C 0.23 tolerated(0.18) benign(0.016) TCGA-AA-3984-01 12 59280654 59280654 T G LRIG3 Missense_Mutation p.E370D 0.18 tolerated(0.18) benign(0.308) TCGA-AA-3984-01 12 60169011 60169011 G A SLC16A7 Missense_Mutation p.R312Q 0.05 deleterious(0.02) possibly_damaging(0.842) TCGA-AA-3984-01 12 60173215 60173215 G A SLC16A7 Missense_Mutation p.D398N 0.18 deleterious(0.03) probably_damaging(1) TCGA-AA-3984-01 12 60173362 60173362 G T SLC16A7 Nonsense_Mutation p.E447* 0.29 TCGA-AA-3984-01 12 62777905 62777905 C A USP15 Missense_Mutation p.S432Y 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 62949801 62949801 C T MON2 Nonsense_Mutation p.R1080* 0.21 TCGA-AA-3984-01 12 62954478 62954478 G A MON2 Missense_Mutation p.S1206N 0.20 tolerated(0.34) benign(0.002) TCGA-AA-3984-01 12 63544431 63544431 G A AVPR1A Silent p.F62F 0.23 TCGA-AA-3984-01 12 64011959 64011959 T C DPY19L2 Missense_Mutation p.K368R 0.27 tolerated(0.07) possibly_damaging(0.457) TCGA-AA-3984-01 12 64062000 64062000 C T DPY19L2 Silent p.R58R 0.23 TCGA-AA-3984-01 12 6422260 6422260 T C PLEKHG6 Intron 0.19 TCGA-AA-3984-01 12 64436690 64436690 C T SRGAP1 Nonsense_Mutation p.R204* 0.07 TCGA-AA-3984-01 12 64536267 64536267 C T SRGAP1 Nonsense_Mutation p.R1025* 0.25 TCGA-AA-3984-01 12 64746753 64746753 C A C12orf56 Missense_Mutation p.L112F 0.20 tolerated(0.17) benign(0.015) TCGA-AA-3984-01 12 64815202 64815202 C A XPOT Missense_Mutation p.S344Y 0.21 deleterious(0) probably_damaging(0.973) TCGA-AA-3984-01 12 64819643 64819643 C T XPOT Missense_Mutation p.R541W 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 6494269 6494269 G A LTBR Nonsense_Mutation p.W92* 0.14 TCGA-AA-3984-01 12 6619272 6619272 G T NCAPD2 Nonsense_Mutation p.E79* 0.14 TCGA-AA-3984-01 12 66345283 66345283 C T HMGA2 Intron 0.24 TCGA-AA-3984-01 12 66610953 66610953 G T IRAK3 Missense_Mutation p.E197D 0.13 tolerated(0.25) benign(0.032) TCGA-AA-3984-01 12 6673109 6673109 G A NOP2 Silent p.L193L 0.21 TCGA-AA-3984-01 12 66771051 66771051 G A GRIP1 Missense_Mutation p.A827V 0.25 tolerated(0.33) benign(0.06) TCGA-AA-3984-01 12 6692411 6692411 C A CHD4 Missense_Mutation p.R1338I 0.21 deleterious(0) probably_damaging(0.928) TCGA-AA-3984-01 12 674394 674394 G A NINJ2 3'UTR 0.12 TCGA-AA-3984-01 12 6748130 6748130 C T ACRBP Missense_Mutation p.R500H 0.23 tolerated(0.16) benign(0.38) TCGA-AA-3984-01 12 68052604 68052604 T G DYRK2 3'UTR 0.06 TCGA-AA-3984-01 12 6833766 6833766 C A COPS7A Intron 0.26 TCGA-AA-3984-01 12 6838575 6838575 C T COPS7A Missense_Mutation p.R164C 0.22 deleterious(0.01) possibly_damaging(0.731) TCGA-AA-3984-01 12 68534 68534 G T RP11-598F7.1 RNA 0.09 TCGA-AA-3984-01 12 68595811 68595811 C A IL26 Missense_Mutation p.R139I 0.16 tolerated(0.14) benign(0.168) TCGA-AA-3984-01 12 69126515 69126515 C A NUP107 Missense_Mutation p.F699L 0.27 deleterious(0.01) probably_damaging(0.916) TCGA-AA-3984-01 12 69136356 69136356 T G NUP107 3'UTR 0.43 TCGA-AA-3984-01 12 69141803 69141803 A G SLC35E3 Missense_Mutation p.T166A 0.07 deleterious(0) benign(0.302) TCGA-AA-3984-01 12 6923362 6923362 G A CD4 Missense_Mutation p.G90E 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 69666944 69666944 C A CPSF6 3'UTR 0.21 TCGA-AA-3984-01 12 69968515 69968515 A G FRS2 Missense_Mutation p.Y436C 0.06 deleterious(0) probably_damaging(0.956) TCGA-AA-3984-01 12 7061171 7061171 C T PTPN6 Missense_Mutation p.R53W 0.20 deleterious(0) probably_damaging(0.913) TCGA-AA-3984-01 12 7070056 7070056 G T PTPN6 3'UTR 0.06 TCGA-AA-3984-01 12 70723217 70723217 C T CNOT2 Missense_Mutation p.P85S 0.22 tolerated_low_confidence(0.44) benign(0.001) TCGA-AA-3984-01 12 70724190 70724190 G A CNOT2 Silent p.S170S 0.23 TCGA-AA-3984-01 12 70963549 70963549 C T PTPRB Silent p.T1180T 0.22 TCGA-AA-3984-01 12 70965607 70965607 T C PTPRB Missense_Mutation p.T1035A 0.20 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 12 71056291 71056291 C T PTPRR Missense_Mutation p.R531Q 0.09 deleterious(0) probably_damaging(0.991) TCGA-AA-3984-01 12 71551584 71551584 G A TSPAN8 Intron 0.11 TCGA-AA-3984-01 12 7169821 7169821 G A C1S Silent p.E16E 0.24 TCGA-AA-3984-01 12 72050562 72050562 A G ZFC3H1 Intron 0.27 TCGA-AA-3984-01 12 72050722 72050723 - T ZFC3H1 Frame_Shift_Ins p.V320Sfs*2 0.12 TCGA-AA-3984-01 12 72068020 72068020 C T THAP2 Missense_Mutation p.R37C 0.12 tolerated(0.07) probably_damaging(0.998) TCGA-AA-3984-01 12 72425414 72425414 G A TPH2 Missense_Mutation p.R471H 0.18 deleterious(0.04) probably_damaging(0.97) TCGA-AA-3984-01 12 7242716 7242716 G T C1R Missense_Mutation p.F119L 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3984-01 12 72667024 72667024 G A TRHDE Missense_Mutation p.A156T 0.15 tolerated(0.08) benign(0.023) TCGA-AA-3984-01 12 7475835 7475835 G T ACSM4 Missense_Mutation p.M377I 0.08 tolerated(0.51) benign(0.001) TCGA-AA-3984-01 12 74932273 74932273 G T ATXN7L3B 3'UTR 0.21 TCGA-AA-3984-01 12 75444869 75444869 T C KCNC2 Missense_Mutation p.N306D 0.10 tolerated(1) benign(0.009) TCGA-AA-3984-01 12 7556281 7556281 G A CD163L1 Missense_Mutation p.R420C 0.07 tolerated(0.05) possibly_damaging(0.806) TCGA-AA-3984-01 12 75601325 75601325 C T KCNC2 Missense_Mutation p.D147N 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 12 75900381 75900381 T G KRR1 Silent p.R134R 0.19 TCGA-AA-3984-01 12 7639988 7639988 G A CD163 Missense_Mutation p.P673S 0.24 tolerated(1) benign(0.003) TCGA-AA-3984-01 12 7640147 7640147 G T CD163 Missense_Mutation p.L620I 0.25 tolerated(0.1) benign(0.181) TCGA-AA-3984-01 12 76442078 76442078 A C NAP1L1 3'UTR 0.20 TCGA-AA-3984-01 12 76762992 76762992 A G OSBPL8 Splice_Site p.X776_splice 0.20 TCGA-AA-3984-01 12 77244667 77244667 C T ZDHHC17 Nonsense_Mutation p.R601* 0.22 TCGA-AA-3984-01 12 77427729 77427729 G A E2F7 Missense_Mutation p.A406V 0.18 deleterious(0.05) benign(0.025) TCGA-AA-3984-01 12 78400316 78400316 G A NAV3 Missense_Mutation p.R333H 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 78400391 78400391 C - NAV3 Frame_Shift_Del p.T360Hfs*7 0.17 TCGA-AA-3984-01 12 7843275 7843275 A C GDF3 Missense_Mutation p.I98M 0.25 tolerated(0.2) benign(0.035) TCGA-AA-3984-01 12 78604188 78604188 T G NAV3 Missense_Mutation p.L2328R 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 78604317 78604317 G A NAV3 3'UTR 0.14 TCGA-AA-3984-01 12 7883477 7883477 G T CLEC4C Missense_Mutation p.S138Y 0.13 tolerated(0.28) benign(0.316) TCGA-AA-3984-01 12 7947406 7947406 G T NANOG Missense_Mutation p.Q211H 0.21 deleterious(0.01) benign(0.289) TCGA-AA-3984-01 12 79986364 79986364 T G PAWR 3'UTR 0.28 TCGA-AA-3984-01 12 80761508 80761508 A C OTOGL Missense_Mutation p.K2158Q 0.19 tolerated(0.56) benign(0.009) TCGA-AA-3984-01 12 8082411 8082411 C A SLC2A3 Missense_Mutation p.D244Y 0.11 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 12 80888831 80888831 G T PTPRQ Nonsense_Mutation p.E550* 0.22 TCGA-AA-3984-01 12 80935578 80935578 C A PTPRQ Missense_Mutation p.F1129L 0.24 tolerated(0.64) benign(0.022) TCGA-AA-3984-01 12 80935946 80935946 T C PTPRQ Missense_Mutation p.V1171A 0.23 tolerated(0.16) benign(0.138) TCGA-AA-3984-01 12 80936043 80936043 A C PTPRQ Missense_Mutation p.E1203D 0.10 tolerated(0.34) benign(0.007) TCGA-AA-3984-01 12 81112916 81112916 A G MYF5 3'UTR 0.16 TCGA-AA-3984-01 12 81205335 81205335 C T LIN7A Missense_Mutation p.R204Q 0.08 deleterious(0.02) benign(0.045) TCGA-AA-3984-01 12 81675078 81675078 T G PPFIA2 Missense_Mutation p.K1057T 0.16 deleterious(0) probably_damaging(0.98) TCGA-AA-3984-01 12 81733022 81733022 C A PPFIA2 Nonsense_Mutation p.G829* 0.06 TCGA-AA-3984-01 12 81741530 81741530 C A PPFIA2 Nonsense_Mutation p.E672* 0.08 TCGA-AA-3984-01 12 81760950 81760950 C A PPFIA2 Splice_Site p.X495_splice 0.19 TCGA-AA-3984-01 12 81769685 81769685 T G PPFIA2 Missense_Mutation p.T341P 0.21 deleterious(0) probably_damaging(0.956) TCGA-AA-3984-01 12 82747002 82747002 C A CCDC59 Missense_Mutation p.K218N 0.20 deleterious(0) possibly_damaging(0.87) TCGA-AA-3984-01 12 8376092 8376092 G A FAM90A1 Missense_Mutation p.P129S 0.07 tolerated(0.23) benign(0.003) TCGA-AA-3984-01 12 85255695 85255695 A C SLC6A15 Missense_Mutation p.F637V 0.15 deleterious(0.01) benign(0.287) TCGA-AA-3984-01 12 85449859 85449859 A C LRRIQ1 Missense_Mutation p.N430H 0.24 tolerated(0.22) possibly_damaging(0.847) TCGA-AA-3984-01 12 85547538 85547538 T C LRRIQ1 Splice_Site p.X1546_splice 0.45 TCGA-AA-3984-01 12 86198455 86198455 G A RASSF9 3'UTR 0.23 TCGA-AA-3984-01 12 86198722 86198722 C A RASSF9 Nonsense_Mutation p.E356* 0.10 TCGA-AA-3984-01 12 8629915 8629915 G T CLEC6A Splice_Site p.X162_splice 0.16 TCGA-AA-3984-01 12 86373762 86373762 A G MGAT4C Missense_Mutation p.Y248H 0.12 tolerated(0.54) possibly_damaging(0.82) TCGA-AA-3984-01 12 8666217 8666217 G A CLEC4D 5'UTR 0.38 TCGA-AA-3984-01 12 8666314 8666314 G T CLEC4D 5'UTR 0.20 TCGA-AA-3984-01 12 8670793 8670793 G A CLEC4D Missense_Mutation p.G52D 0.06 tolerated(0.52) benign(0.037) TCGA-AA-3984-01 12 8670800 8670800 A T CLEC4D Silent p.G54G 0.21 TCGA-AA-3984-01 12 8756788 8756788 G A AICDA 3'UTR 0.09 TCGA-AA-3984-01 12 8759562 8759562 G A AICDA Missense_Mutation p.R19C 0.27 tolerated(0.16) probably_damaging(0.984) TCGA-AA-3984-01 12 88444181 88444181 C A CEP290 Missense_Mutation p.D2387Y 0.31 probably_damaging(0.969) TCGA-AA-3984-01 12 88471632 88471632 T G CEP290 Missense_Mutation p.N1810H 0.21 possibly_damaging(0.678) TCGA-AA-3984-01 12 88487723 88487723 T G CEP290 Missense_Mutation p.K1045Q 0.18 probably_damaging(0.999) TCGA-AA-3984-01 12 88500575 88500575 C T CEP290 Silent p.R898R 0.23 TCGA-AA-3984-01 12 88512431 88512431 G T CEP290 Missense_Mutation p.L538I 0.15 possibly_damaging(0.742) TCGA-AA-3984-01 12 8866590 8866590 C T RIMKLB Missense_Mutation p.A43V 0.19 tolerated(0.5) benign(0.03) TCGA-AA-3984-01 12 8904606 8904606 C T RIMKLB Missense_Mutation p.P154S 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 12 89745540 89745540 C T DUSP6 Missense_Mutation p.D93N 0.32 tolerated(0.5) benign(0.008) TCGA-AA-3984-01 12 8988906 8988906 G C A2ML1 Missense_Mutation p.Q233H 0.19 deleterious(0.01) possibly_damaging(0.516) TCGA-AA-3984-01 12 9000230 9000230 C T A2ML1 Missense_Mutation p.A590V 0.28 deleterious(0) probably_damaging(0.977) TCGA-AA-3984-01 12 9000244 9000244 G A A2ML1 Missense_Mutation p.D595N 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 12 9004439 9004439 C T A2ML1 Missense_Mutation p.A765V 0.22 tolerated(0.24) probably_damaging(0.954) TCGA-AA-3984-01 12 9004502 9004502 C T A2ML1 Missense_Mutation p.A786V 0.24 tolerated(0.38) benign(0.052) TCGA-AA-3984-01 12 9086862 9086863 - A PHC1 Frame_Shift_Ins p.A683Sfs*2 0.18 TCGA-AA-3984-01 12 91348504 91348504 C T CCER1 Missense_Mutation p.D6N 0.11 tolerated(0.9) benign(0.001) TCGA-AA-3984-01 12 91445102 91445102 T A KERA 3'UTR 0.20 TCGA-AA-3984-01 12 9247596 9247596 G C A2M Missense_Mutation p.P700A 0.19 tolerated(0.14) benign(0.001) TCGA-AA-3984-01 12 9262564 9262564 G T A2M Missense_Mutation p.S191Y 0.17 deleterious(0.02) benign(0.191) TCGA-AA-3984-01 12 9305812 9305812 T A PZP Missense_Mutation p.N1301I 0.21 tolerated(0.07) benign(0.051) TCGA-AA-3984-01 12 9307350 9307350 C T PZP Silent p.V1212V 0.07 TCGA-AA-3984-01 12 9318650 9318650 C A PZP Silent p.V752V 0.29 TCGA-AA-3984-01 12 93968650 93968650 G A SOCS2 Missense_Mutation p.E98K 0.09 deleterious(0.04) possibly_damaging(0.452) TCGA-AA-3984-01 12 94613886 94613886 G A PLXNC1 Missense_Mutation p.S550N 0.21 tolerated(0.42) benign(0.001) TCGA-AA-3984-01 12 94618077 94618077 C T PLXNC1 Silent p.C592C 0.08 TCGA-AA-3984-01 12 94642186 94642186 C T PLXNC1 Missense_Mutation p.R926W 0.22 tolerated(0.19) benign(0.003) TCGA-AA-3984-01 12 94727303 94727303 C T CCDC41 Missense_Mutation p.R511Q 0.12 tolerated(0.38) benign(0.1) TCGA-AA-3984-01 12 94796990 94796990 C A CCDC41 Nonsense_Mutation p.E125* 0.24 TCGA-AA-3984-01 12 95604688 95604688 C T FGD6 Silent p.E124E 0.22 TCGA-AA-3984-01 12 95922631 95922631 C A USP44 Nonsense_Mutation p.E526* 0.18 TCGA-AA-3984-01 12 96275317 96275317 G A CCDC38 Silent p.F312F 0.24 TCGA-AA-3984-01 12 96346565 96346565 G T AMDHD1 Nonsense_Mutation p.E70* 0.23 TCGA-AA-3984-01 12 96354336 96354336 G A AMDHD1 Missense_Mutation p.G250R 0.14 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 12 96704931 96704931 G A CDK17 Missense_Mutation p.P148S 0.15 deleterious(0.03) possibly_damaging(0.493) TCGA-AA-3984-01 12 970351 970351 C T WNK1 Missense_Mutation p.A598V 0.12 tolerated(0.29) unknown(0) TCGA-AA-3984-01 12 97051871 97051871 A C C12orf55 Missense_Mutation p.N1771T 0.26 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 12 97073397 97073397 G A C12orf55 Silent p.A1861A 0.20 TCGA-AA-3984-01 12 97078429 97078429 T G C12orf55 Missense_Mutation p.V1907G 0.10 tolerated(0.3) benign(0.013) TCGA-AA-3984-01 12 97114295 97114295 G A C12orf55 Missense_Mutation p.R2306Q 0.20 deleterious(0.05) benign(0.001) TCGA-AA-3984-01 12 97339584 97339584 C T NEDD1 Missense_Mutation p.R597C 0.19 deleterious(0.01) possibly_damaging(0.707) TCGA-AA-3984-01 12 9875269 9875269 G T CLECL1 Missense_Mutation p.L153I 0.09 deleterious(0.02) probably_damaging(0.994) TCGA-AA-3984-01 12 98850035 98850035 C A SLC9A7P1 RNA 0.27 TCGA-AA-3984-01 12 98938111 98938111 G T TMPO Missense_Mutation p.R256I 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-AA-3984-01 12 99019711 99019711 A C IKBIP Missense_Mutation p.F377L 0.09 tolerated_low_confidence(0.07) benign(0.006) TCGA-AA-3984-01 12 99071221 99071221 G A APAF1 Silent p.T604T 0.22 TCGA-AA-3984-01 12 99192714 99192714 G A ANKS1B Missense_Mutation p.R1089W 0.44 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 13 100037484 100037484 C T UBAC2 Silent p.V310V 0.36 TCGA-AA-3984-01 13 100955220 100955220 T C PCCA Missense_Mutation p.S418P 0.35 tolerated(0.11) possibly_damaging(0.82) TCGA-AA-3984-01 13 101735172 101735172 G T NALCN Silent p.I1251I 0.27 TCGA-AA-3984-01 13 101742293 101742293 G A NALCN Silent p.F1098F 0.32 TCGA-AA-3984-01 13 101742314 101742314 C T NALCN Silent p.A1091A 0.12 TCGA-AA-3984-01 13 101795440 101795440 G A NALCN Silent p.I703I 0.26 TCGA-AA-3984-01 13 103381885 103381885 A C CCDC168 Missense_Mutation p.I2425M 0.24 tolerated(0.23) unknown(0) TCGA-AA-3984-01 13 103383850 103383850 C T CCDC168 Silent p.T1770T 0.28 TCGA-AA-3984-01 13 103385294 103385294 G A CCDC168 Missense_Mutation p.P1289L 0.13 deleterious(0.02) unknown(0) TCGA-AA-3984-01 13 103385998 103385998 C A CCDC168 Missense_Mutation p.K1054N 0.27 deleterious(0.03) possibly_damaging(0.607) TCGA-AA-3984-01 13 103387771 103387771 C A CCDC168 Missense_Mutation p.E463D 0.34 tolerated(0.6) benign(0.388) TCGA-AA-3984-01 13 103396501 103396501 C A LINC00283 RNA 0.18 TCGA-AA-3984-01 13 103419637 103419637 C A TEX30 Nonsense_Mutation p.E164* 0.15 TCGA-AA-3984-01 13 103459854 103459854 G A BIVM-ERCC5 Silent p.A51A 0.32 TCGA-AA-3984-01 13 103468820 103468820 A C BIVM-ERCC5 Missense_Mutation p.K146T 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.859) TCGA-AA-3984-01 13 108518837 108518837 C A FAM155A Missense_Mutation p.Q36H 0.50 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 13 108861205 108861205 G T LIG4 Silent p.S804S 0.20 TCGA-AA-3984-01 13 108886570 108886570 A C ABHD13 3'UTR 0.21 TCGA-AA-3984-01 13 110827046 110827046 T G COL4A1 Missense_Mutation p.E1083D 0.24 benign(0.444) TCGA-AA-3984-01 13 110838768 110838768 C A COL4A1 Missense_Mutation p.G621C 0.13 probably_damaging(1) TCGA-AA-3984-01 13 110839607 110839607 C T COL4A1 Missense_Mutation p.D536N 0.34 benign(0.003) TCGA-AA-3984-01 13 110845183 110845183 C A COL4A1 Nonsense_Mutation p.E487* 0.22 TCGA-AA-3984-01 13 111371712 111371712 C T ING1 Silent p.I234I 0.29 TCGA-AA-3984-01 13 113052412 113052412 C T SPACA7 Silent p.S67S 0.17 TCGA-AA-3984-01 13 113153399 113153399 C T TUBGCP3 Missense_Mutation p.R803Q 0.08 deleterious(0.01) possibly_damaging(0.781) TCGA-AA-3984-01 13 113512583 113512583 C T ATP11A Silent p.L882L 0.09 TCGA-AA-3984-01 13 113744368 113744368 C A MCF2L Intron 0.31 TCGA-AA-3984-01 13 115089539 115089539 C T CHAMP1 Silent p.Y74Y 0.24 TCGA-AA-3984-01 13 19751395 19751395 C T TUBA3C Missense_Mutation p.R243Q 0.28 deleterious_low_confidence(0) possibly_damaging(0.706) TCGA-AA-3984-01 13 19997249 19997249 T G TPTE2 Missense_Mutation p.I508L 0.10 deleterious(0.05) benign(0.025) TCGA-AA-3984-01 13 20039660 20039660 C A TPTE2 Missense_Mutation p.R186I 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 13 20399175 20399175 C A ZMYM5 Missense_Mutation p.E484D 0.10 tolerated_low_confidence(0.11) benign(0.016) TCGA-AA-3984-01 13 20978851 20978851 C T CRYL1 Missense_Mutation p.E257K 0.30 deleterious_low_confidence(0) benign(0.231) TCGA-AA-3984-01 13 21172838 21172838 G A IFT88 Missense_Mutation p.E224K 0.22 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 13 21429888 21429888 G A XPO4 Missense_Mutation p.R112W 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 13 21565503 21565503 C A LATS2 Missense_Mutation p.S128I 0.18 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-AA-3984-01 13 21732227 21732227 G T SKA3 Nonsense_Mutation p.S318* 0.21 TCGA-AA-3984-01 13 21751352 21751352 G T MRP63 Missense_Mutation p.K99N 0.10 tolerated(0.09) possibly_damaging(0.598) TCGA-AA-3984-01 13 22245944 22245944 C A FGF9 5'UTR 0.35 TCGA-AA-3984-01 13 23904719 23904719 G T SACS Missense_Mutation p.F4432L 0.27 probably_damaging(0.952) TCGA-AA-3984-01 13 23909780 23909780 T G SACS Missense_Mutation p.E2745D 0.24 probably_damaging(0.989) TCGA-AA-3984-01 13 23910924 23910924 T G SACS Missense_Mutation p.N2364T 0.24 probably_damaging(0.993) TCGA-AA-3984-01 13 23929004 23929004 T G SACS Missense_Mutation p.N583H 0.08 benign(0.229) TCGA-AA-3984-01 13 25044090 25044090 T C PARP4 Missense_Mutation p.D663G 0.32 tolerated(0.07) benign(0.139) TCGA-AA-3984-01 13 25458559 25458559 G A CENPJ Missense_Mutation p.P1174S 0.13 deleterious(0.03) possibly_damaging(0.672) TCGA-AA-3984-01 13 25481043 25481043 C T CENPJ Missense_Mutation p.R378Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 13 25743937 25743937 C A AMER2 Missense_Mutation p.K607N 0.24 deleterious(0) possibly_damaging(0.848) TCGA-AA-3984-01 13 25835929 25835929 A G MTMR6 Silent p.C201C 0.33 TCGA-AA-3984-01 13 25887024 25887024 C T NUPL1 Missense_Mutation p.T97M 0.22 deleterious(0.01) possibly_damaging(0.736) TCGA-AA-3984-01 13 26043168 26043168 G A ATP8A2 Missense_Mutation p.A44T 0.37 tolerated(0.56) benign(0.005) TCGA-AA-3984-01 13 26125501 26125501 G A ATP8A2 Missense_Mutation p.R306K 0.15 tolerated(0.07) benign(0.175) TCGA-AA-3984-01 13 27259958 27259958 C T WASF3 Silent p.F495F 0.10 TCGA-AA-3984-01 13 28367819 28367819 C T GSX1 Missense_Mutation p.R177C 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 13 28367983 28367983 C T GSX1 Silent p.C231C 0.22 TCGA-AA-3984-01 13 28578177 28578177 T G FLT3 3'UTR 0.32 TCGA-AA-3984-01 13 28597607 28597607 A C FLT3 Missense_Mutation p.I766M 0.28 tolerated(0.16) benign(0.043) TCGA-AA-3984-01 13 28623641 28623641 T G FLT3 Missense_Mutation p.N306H 0.30 deleterious(0.01) probably_damaging(0.941) TCGA-AA-3984-01 13 28841237 28841237 C T PAN3 Missense_Mutation p.R527C 0.30 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 13 31205223 31205223 G A USPL1 Silent p.Q160Q 0.29 TCGA-AA-3984-01 13 31713013 31713013 G A HSPH1 Missense_Mutation p.R705W 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 13 32366097 32366097 C A RXFP2 Missense_Mutation p.L434I 0.26 tolerated(0.61) benign(0.07) TCGA-AA-3984-01 13 32818206 32818206 C T FRY Nonsense_Mutation p.Q2239* 0.17 TCGA-AA-3984-01 13 32828498 32828498 C T FRY Silent p.F2461F 0.37 TCGA-AA-3984-01 13 32836462 32836462 C T FRY Silent p.L2543L 0.32 TCGA-AA-3984-01 13 33016813 33016813 C T N4BP2L2 Missense_Mutation p.E621K 0.24 tolerated(1) benign(0.001) TCGA-AA-3984-01 13 33250060 33250060 C A PDS5B Missense_Mutation p.S309Y 0.22 deleterious(0.02) possibly_damaging(0.601) TCGA-AA-3984-01 13 35730312 35730312 A C NBEA Missense_Mutation p.K874Q 0.27 tolerated(0.13) probably_damaging(0.999) TCGA-AA-3984-01 13 36129211 36129211 A G NBEA Silent p.E2298E 0.38 TCGA-AA-3984-01 13 36167434 36167434 G A NBEA Intron 0.23 TCGA-AA-3984-01 13 36801461 36801461 A G CCDC169 Silent p.G201G 0.24 TCGA-AA-3984-01 13 37269810 37269810 C A SERTM1 3'UTR 0.21 TCGA-AA-3984-01 13 37569724 37569724 C T ALG5 Missense_Mutation p.V26I 0.23 tolerated(0.74) benign(0.003) TCGA-AA-3984-01 13 38154783 38154783 T G POSTN Missense_Mutation p.N482H 0.28 tolerated(0.11) probably_damaging(1) TCGA-AA-3984-01 13 38357251 38357251 G A TRPC4 Missense_Mutation p.L74F 0.20 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 13 39262102 39262102 C T FREM2 Silent p.F207F 0.14 TCGA-AA-3984-01 13 39265013 39265013 T C FREM2 Missense_Mutation p.F1178L 0.33 tolerated(0.14) benign(0.001) TCGA-AA-3984-01 13 39430372 39430372 A C FREM2 Missense_Mutation p.E2345D 0.23 tolerated(0.19) benign(0.369) TCGA-AA-3984-01 13 39430382 39430382 G A FREM2 Missense_Mutation p.A2349T 0.24 deleterious(0.01) benign(0.007) TCGA-AA-3984-01 13 39613321 39613321 C A NHLRC3 Missense_Mutation p.L45I 0.12 deleterious(0.04) benign(0.147) TCGA-AA-3984-01 13 41533125 41533125 C T ELF1 Missense_Mutation p.V34I 0.18 deleterious(0.04) benign(0.264) TCGA-AA-3984-01 13 41705852 41705852 G A KBTBD6 Missense_Mutation p.R266C 0.23 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 13 41767912 41767912 G A KBTBD7 Missense_Mutation p.A161V 0.07 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 13 41768554 41768554 C T KBTBD7 5'UTR 0.27 TCGA-AA-3984-01 13 41943328 41943328 G A NAA16 Missense_Mutation p.R619H 0.28 tolerated(0.06) benign(0.021) TCGA-AA-3984-01 13 42245269 42245269 G A VWA8 Missense_Mutation p.S1475L 0.16 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 13 42259245 42259245 G A VWA8 Missense_Mutation p.T1422M 0.08 deleterious(0.04) benign(0.011) TCGA-AA-3984-01 13 42263620 42263620 T G VWA8 Missense_Mutation p.K1334T 0.31 tolerated(0.52) benign(0.001) TCGA-AA-3984-01 13 42385433 42385433 C T VWA8 Missense_Mutation p.R664Q 0.23 deleterious(0) probably_damaging(0.921) TCGA-AA-3984-01 13 42877281 42877281 A C AKAP11 Missense_Mutation p.K1467Q 0.24 tolerated(0.44) benign(0.015) TCGA-AA-3984-01 13 43896530 43896530 G A ENOX1 Silent p.V417V 0.24 TCGA-AA-3984-01 13 43935431 43935431 A C ENOX1 Silent p.L122L 0.22 TCGA-AA-3984-01 13 45768581 45768581 C T KCTD4 Missense_Mutation p.G41E 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 13 45965215 45965215 C T SLC25A30 3'Flank 0.23 TCGA-AA-3984-01 13 45970148 45970148 G T SLC25A30 Missense_Mutation p.F279L 0.33 tolerated(0.1) benign(0.424) TCGA-AA-3984-01 13 46563175 46563175 A C ZC3H13 Silent p.S334S 0.31 TCGA-AA-3984-01 13 46918917 46918917 A G KIAA0226L Missense_Mutation p.V612A 0.20 deleterious(0.02) probably_damaging(0.947) TCGA-AA-3984-01 13 46942290 46942290 C A KIAA0226L Missense_Mutation p.S238I 0.33 tolerated(0.05) benign(0.02) TCGA-AA-3984-01 13 47466613 47466613 G A HTR2A Silent p.V175V 0.28 TCGA-AA-3984-01 13 48615145 48615145 C A NUDT15 Missense_Mutation p.S83Y 0.27 deleterious(0.01) possibly_damaging(0.866) TCGA-AA-3984-01 13 48937018 48937018 G A RB1 Silent p.R262R 0.32 TCGA-AA-3984-01 13 50206894 50206894 G A ARL11 3'UTR 0.26 TCGA-AA-3984-01 13 50280284 50280284 C A KPNA3 Nonsense_Mutation p.E387* 0.25 TCGA-AA-3984-01 13 50587063 50587063 C T TRIM13 Silent p.V332V 0.17 TCGA-AA-3984-01 13 50591652 50591652 A C TRIM13 3'Flank 0.22 TCGA-AA-3984-01 13 50594584 50594584 G T KCNRG Missense_Mutation p.K271N 0.24 tolerated(0.1) benign(0.006) TCGA-AA-3984-01 13 51591111 51591111 C T GUCY1B2 RNA 0.29 TCGA-AA-3984-01 13 51594815 51594815 T C GUCY1B2 RNA 0.20 TCGA-AA-3984-01 13 51600879 51600879 G A RNA5SP29 3'Flank 0.12 TCGA-AA-3984-01 13 51826106 51826106 G T FAM124A Missense_Mutation p.K237N 0.13 deleterious(0.01) benign(0.287) TCGA-AA-3984-01 13 51935913 51935913 A C SERPINE3 Intron 0.14 TCGA-AA-3984-01 13 51952511 51952511 C T INTS6 Missense_Mutation p.R489Q 0.08 tolerated(0.1) possibly_damaging(0.778) TCGA-AA-3984-01 13 52351241 52351241 C T DHRS12 Silent p.T155T 0.32 TCGA-AA-3984-01 13 52509101 52509101 C T ATP7B Missense_Mutation p.A1397T 0.21 tolerated(0.1) benign(0.15) TCGA-AA-3984-01 13 52602541 52602541 G C ALG11 Missense_Mutation p.G432R 0.21 deleterious(0.02) benign(0.169) TCGA-AA-3984-01 13 52604116 52604116 G A UTP14C Silent p.E392E 0.32 TCGA-AA-3984-01 13 52728307 52728307 G T NEK3 Missense_Mutation p.S40Y 0.23 deleterious(0) probably_damaging(0.921) TCGA-AA-3984-01 13 53191750 53191750 T C HNRNPA1L2 5'UTR 0.21 TCGA-AA-3984-01 13 53232568 53232568 C A SUGT1 Silent p.L74L 0.27 TCGA-AA-3984-01 13 53616083 53616083 G T OLFM4 Missense_Mutation p.K132N 0.22 tolerated(0.51) possibly_damaging(0.71) TCGA-AA-3984-01 13 58206999 58206999 G A PCDH17 Missense_Mutation p.E107K 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 13 58207546 58207546 G A PCDH17 Missense_Mutation p.R289H 0.26 deleterious(0.01) benign(0.192) TCGA-AA-3984-01 13 58208418 58208418 G A PCDH17 Missense_Mutation p.A580T 0.33 tolerated(0.36) benign(0.011) TCGA-AA-3984-01 13 60565310 60565310 C T DIAPH3 Missense_Mutation p.R448Q 0.35 deleterious(0) probably_damaging(0.987) TCGA-AA-3984-01 13 60590270 60590270 T G DIAPH3 Missense_Mutation p.E212D 0.30 deleterious(0.04) benign(0.297) TCGA-AA-3984-01 13 61102911 61102911 G T TDRD3 Nonsense_Mutation p.E518* 0.17 TCGA-AA-3984-01 13 61103095 61103095 G A TDRD3 Missense_Mutation p.R579Q 0.32 tolerated(0.32) benign(0.013) TCGA-AA-3984-01 13 67801793 67801793 A G PCDH9 Silent p.H260H 0.28 TCGA-AA-3984-01 13 67802576 67802576 A C PCDH9 5'UTR 0.27 TCGA-AA-3984-01 13 70413197 70413197 C A KLHL1 Missense_Mutation p.R442I 0.09 deleterious(0) possibly_damaging(0.898) TCGA-AA-3984-01 13 73347916 73347916 C T DIS3 Missense_Mutation p.R382Q 0.07 deleterious(0.01) benign(0.021) TCGA-AA-3984-01 13 73350083 73350083 C T DIS3 Missense_Mutation p.D268N 0.29 tolerated(0.12) benign(0.086) TCGA-AA-3984-01 13 73372048 73372048 C T PIBF1 Missense_Mutation p.R186C 0.10 deleterious(0) possibly_damaging(0.771) TCGA-AA-3984-01 13 75886940 75886940 G A TBC1D4 Missense_Mutation p.R773W 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 13 75900509 75900509 C T TBC1D4 Silent p.P619P 0.23 TCGA-AA-3984-01 13 75911171 75911171 A C TBC1D4 Missense_Mutation p.I539M 0.28 tolerated(0.21) benign(0.089) TCGA-AA-3984-01 13 76409321 76409321 T C LMO7 Intron 0.33 TCGA-AA-3984-01 13 77589590 77589590 T G FBXL3 Silent p.T199T 0.29 TCGA-AA-3984-01 13 77730270 77730270 G A MYCBP2 Missense_Mutation p.R2242C 0.38 probably_damaging(0.984) TCGA-AA-3984-01 13 77780956 77780956 G A MYCBP2 Nonsense_Mutation p.R1103* 0.17 TCGA-AA-3984-01 13 77817968 77817968 C A MYCBP2 Nonsense_Mutation p.E796* 0.36 TCGA-AA-3984-01 13 78173832 78173832 G T SCEL Missense_Mutation p.S289I 0.08 deleterious(0) probably_damaging(0.989) TCGA-AA-3984-01 13 86368179 86368179 T G SLITRK6 Missense_Mutation p.E822A 0.09 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 13 88329437 88329437 C T SLITRK5 Silent p.F598F 0.12 TCGA-AA-3984-01 13 88331070 88331070 T A SLITRK5 3'UTR 0.08 TCGA-AA-3984-01 13 88331347 88331347 A T SLITRK5 3'UTR 0.23 TCGA-AA-3984-01 13 94482459 94482459 T C GPC6 Silent p.F124F 0.09 TCGA-AA-3984-01 13 95095788 95095788 C T DCT Missense_Mutation p.R461Q 0.33 deleterious(0.03) benign(0.423) TCGA-AA-3984-01 13 95121132 95121132 C T DCT Missense_Mutation p.D155N 0.28 deleterious(0.02) probably_damaging(0.932) TCGA-AA-3984-01 13 95673844 95673844 G A ABCC4 Silent p.F1321F 0.59 TCGA-AA-3984-01 13 95858796 95858796 C T ABCC4 Missense_Mutation p.R384Q 0.31 tolerated(0.42) benign(0.006) TCGA-AA-3984-01 13 96086074 96086074 G T CLDN10 5'UTR 0.35 TCGA-AA-3984-01 13 96234559 96234559 C A DZIP1 Nonsense_Mutation p.E845* 0.23 TCGA-AA-3984-01 13 96237003 96237003 C A DZIP1 Silent p.G837G 0.07 TCGA-AA-3984-01 13 96242540 96242540 G A DZIP1 Silent p.L612L 0.23 TCGA-AA-3984-01 13 96665656 96665656 C T UGGT2 Missense_Mutation p.E189K 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 13 96675374 96675374 A G UGGT2 Silent p.C135C 0.27 TCGA-AA-3984-01 13 97485255 97485255 C A HS6ST3 Missense_Mutation p.L407I 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 13 97928586 97928586 G A MBNL2 Missense_Mutation p.E33K 0.11 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 13 98116607 98116607 G A RAP2A Missense_Mutation p.E155K 0.25 deleterious(0.02) benign(0.057) TCGA-AA-3984-01 13 99116018 99116018 C T STK24 Missense_Mutation p.E298K 0.11 deleterious(0) possibly_damaging(0.643) TCGA-AA-3984-01 13 99374149 99374149 G T SLC15A1 Missense_Mutation p.S125Y 0.42 deleterious(0) benign(0.314) TCGA-AA-3984-01 13 99556905 99556906 - A DOCK9 Frame_Shift_Ins p.Y339Lfs*10 0.10 TCGA-AA-3984-01 13 99947429 99947429 T G GPR183 Missense_Mutation p.K324T 0.30 deleterious(0) possibly_damaging(0.697) TCGA-AA-3984-01 14 100387145 100387145 G A EML1 Missense_Mutation p.E633K 0.18 tolerated(0.05) possibly_damaging(0.492) TCGA-AA-3984-01 14 101498354 101498354 C T MIR543 RNA 0.08 TCGA-AA-3984-01 14 101507132 101507132 C A MIR376A1 RNA 0.06 TCGA-AA-3984-01 14 101526141 101526141 G A MIR154 RNA 0.26 TCGA-AA-3984-01 14 101532297 101532297 G A MIR410 RNA 0.33 TCGA-AA-3984-01 14 102359423 102359423 C A PPP2R5C Missense_Mutation p.S290Y 0.30 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 14 102900786 102900786 C T TECPR2 Silent p.P544P 0.26 TCGA-AA-3984-01 14 103410391 103410391 C T CDC42BPB Silent p.S1415S 0.26 TCGA-AA-3984-01 14 103436497 103436497 C T CDC42BPB Silent p.E662E 0.09 TCGA-AA-3984-01 14 104379030 104379030 A C C14orf2 Silent p.A67A 0.11 TCGA-AA-3984-01 14 105175709 105175709 G A INF2 Missense_Mutation p.E681K 0.28 deleterious(0) unknown(0) TCGA-AA-3984-01 14 105412509 105412509 C T AHNAK2 Silent p.P3093P 0.34 TCGA-AA-3984-01 14 105417850 105417850 T C AHNAK2 Missense_Mutation p.D1313G 0.26 possibly_damaging(0.728) TCGA-AA-3984-01 14 105420635 105420635 G A AHNAK2 Nonsense_Mutation p.R385* 0.19 TCGA-AA-3984-01 14 105453021 105453021 C T C14orf79 Missense_Mutation p.R85W 0.26 deleterious(0) probably_damaging(0.977) TCGA-AA-3984-01 14 105843227 105843227 C T PACS2 Silent p.D308D 0.27 TCGA-AA-3984-01 14 105945811 105945811 A C CRIP2 Silent p.G254G 0.20 TCGA-AA-3984-01 14 106208713 106208713 G A IGHG1 Missense_Mutation p.S102F 0.28 tolerated(0.08) benign(0.015) TCGA-AA-3984-01 14 106388467 106388467 G A KIAA0125 Missense_Mutation p.G127D 0.22 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AA-3984-01 14 106780929 106780929 A C IGHV4-28 Missense_Mutation p.F6C 0.25 deleterious(0.01) possibly_damaging(0.837) TCGA-AA-3984-01 14 107034983 107034983 G A IGHV5-51 Missense_Mutation p.P33S 0.12 deleterious(0.01) possibly_damaging(0.554) TCGA-AA-3984-01 14 19574195 19574195 G T POTEG Nonsense_Mutation p.E418* 0.11 TCGA-AA-3984-01 14 19990660 19990660 T G POTEM Missense_Mutation p.E472A 0.11 deleterious_low_confidence(0.01) benign(0.034) TCGA-AA-3984-01 14 20344608 20344608 T G OR4K2 Missense_Mutation p.F61C 0.19 deleterious(0) probably_damaging(0.921) TCGA-AA-3984-01 14 20345241 20345241 C A OR4K2 Missense_Mutation p.S272Y 0.16 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 14 20404025 20404025 C A OR4K1 Missense_Mutation p.S67Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 20444684 20444684 C A OR4K15 Missense_Mutation p.S336Y 0.28 deleterious_low_confidence(0.01) benign(0.288) TCGA-AA-3984-01 14 20586306 20586306 C T OR4K17 Silent p.I247I 0.22 TCGA-AA-3984-01 14 20666271 20666271 C T OR11G2 Silent p.V259V 0.31 TCGA-AA-3984-01 14 20692028 20692028 C T OR11H6 Missense_Mutation p.L54F 0.10 deleterious(0.04) benign(0.275) TCGA-AA-3984-01 14 20781828 20781828 T C CCNB1IP1 Missense_Mutation p.T144A 0.33 tolerated(0.83) benign(0.002) TCGA-AA-3984-01 14 20784441 20784441 C T CCNB1IP1 Missense_Mutation p.R81Q 0.19 tolerated(0.06) benign(0.246) TCGA-AA-3984-01 14 20925523 20925523 G T APEX1 Missense_Mutation p.M271I 0.10 tolerated(0.4) possibly_damaging(0.478) TCGA-AA-3984-01 14 20925743 20925743 G T APEX1 3'UTR 0.32 TCGA-AA-3984-01 14 21162079 21162079 G A ANG Missense_Mutation p.R119Q 0.43 deleterious(0.01) probably_damaging(0.933) TCGA-AA-3984-01 14 21168119 21168119 T C RNASE4 3'UTR 0.25 TCGA-AA-3984-01 14 21168519 21168519 A C RNASE4 3'UTR 0.10 TCGA-AA-3984-01 14 21238987 21238987 C T EDDM3B 3'UTR 0.09 TCGA-AA-3984-01 14 21464794 21464794 C T METTL17 Missense_Mutation p.R397C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 21526075 21526075 C T RNASE8 Silent p.C8C 0.35 TCGA-AA-3984-01 14 21770698 21770698 C T RPGRIP1 Missense_Mutation p.A181V 0.07 tolerated(1) benign(0.001) TCGA-AA-3984-01 14 21826155 21826155 G A SUPT16H Silent p.N807N 0.17 TCGA-AA-3984-01 14 21867787 21867787 G A CHD8 Missense_Mutation p.S1632L 0.24 deleterious(0) benign(0.381) TCGA-AA-3984-01 14 21960829 21960829 G A TOX4 Missense_Mutation p.A352T 0.31 tolerated(1) benign(0.001) TCGA-AA-3984-01 14 23239777 23239777 C A OXA1L Silent p.S319S 0.33 TCGA-AA-3984-01 14 23242786 23242786 C T SLC7A7 3'UTR 0.19 TCGA-AA-3984-01 14 23242878 23242878 C A SLC7A7 Nonsense_Mutation p.E493* 0.20 TCGA-AA-3984-01 14 23588171 23588171 C T CEBPE Missense_Mutation p.A44T 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-AA-3984-01 14 23847691 23847691 G A CMTM5 Missense_Mutation p.R87Q 0.11 tolerated(0.14) benign(0.045) TCGA-AA-3984-01 14 23855568 23855568 C T MYH6 Missense_Mutation p.A1639T 0.21 tolerated(0.11) benign(0.006) TCGA-AA-3984-01 14 23870042 23870042 G A MYH6 Missense_Mutation p.A429V 0.10 deleterious(0.02) benign(0.198) TCGA-AA-3984-01 14 23886765 23886765 G A MYH7 Missense_Mutation p.R1434C 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 14 23900159 23900159 A T MYH7 Missense_Mutation p.D282E 0.33 deleterious(0.01) benign(0.368) TCGA-AA-3984-01 14 24029050 24029050 G A AP1G2 Missense_Mutation p.R756W 0.08 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 14 24035386 24035386 C T AP1G2 Intron 0.14 TCGA-AA-3984-01 14 24657828 24657828 T G IPO4 Missense_Mutation p.Q29P 0.20 deleterious(0.01) benign(0.244) TCGA-AA-3984-01 14 24707797 24707797 C T GMPR2 Missense_Mutation p.A305V 0.17 tolerated(0.15) benign(0.269) TCGA-AA-3984-01 14 24734877 24734877 C T RABGGTA Missense_Mutation p.G550S 0.10 tolerated(0.38) benign(0.001) TCGA-AA-3984-01 14 24787668 24787668 T C ADCY4 Missense_Mutation p.N1063S 0.30 tolerated(0.8) benign(0.001) TCGA-AA-3984-01 14 24844891 24844891 G A NFATC4 Silent p.E696E 0.36 TCGA-AA-3984-01 14 24897972 24897972 A G CBLN3 Missense_Mutation p.Y97H 0.12 tolerated(0.05) probably_damaging(0.992) TCGA-AA-3984-01 14 25281823 25281823 A C STXBP6 3'UTR 0.33 TCGA-AA-3984-01 14 29238399 29238399 G T FOXG1 3'UTR 0.07 TCGA-AA-3984-01 14 29261134 29261134 C T C14orf23 Silent p.F57F 0.13 TCGA-AA-3984-01 14 30046660 30046660 G T PRKD1 Missense_Mutation p.D841E 0.10 tolerated(0.19) benign(0.034) TCGA-AA-3984-01 14 31122768 31122768 T C SCFD1 Missense_Mutation p.Y277H 0.11 deleterious(0) possibly_damaging(0.905) TCGA-AA-3984-01 14 31354849 31354849 C T COCH Intron 0.31 TCGA-AA-3984-01 14 31597902 31597902 T G HECTD1 Missense_Mutation p.N1559H 0.32 deleterious(0.02) probably_damaging(0.979) TCGA-AA-3984-01 14 33292049 33292049 C T AKAP6 Missense_Mutation p.A1677V 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 14 33292160 33292160 C T AKAP6 Missense_Mutation p.S1714L 0.09 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 14 33292703 33292703 A G AKAP6 Missense_Mutation p.E1895G 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 14 34396205 34396205 C T EGLN3 Missense_Mutation p.E217K 0.06 deleterious(0.02) possibly_damaging(0.901) TCGA-AA-3984-01 14 36006137 36006137 C A INSM2 3'UTR 0.22 TCGA-AA-3984-01 14 36217850 36217850 G A RALGAPA1 Missense_Mutation p.R398C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 36244916 36244916 C T RALGAPA1 Missense_Mutation p.D48N 0.15 deleterious(0) possibly_damaging(0.664) TCGA-AA-3984-01 14 38724858 38724858 C T CLEC14A Missense_Mutation p.E124K 0.40 tolerated(0.13) benign(0.385) TCGA-AA-3984-01 14 38725565 38725565 G A CLEC14A 5'UTR 0.25 TCGA-AA-3984-01 14 39620985 39620985 C A TRAPPC6B Missense_Mutation p.S137I 0.24 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 14 44976346 44976346 G T FSCB 5'UTR 0.09 TCGA-AA-3984-01 14 45398218 45398218 G A KLHL28 3'UTR 0.24 TCGA-AA-3984-01 14 45432729 45432729 A G FAM179B Missense_Mutation p.T369A 0.18 tolerated(0.21) probably_damaging(0.98) TCGA-AA-3984-01 14 45583718 45583718 G T PRPF39 Missense_Mutation p.K618N 0.16 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 14 47389341 47389341 G T MDGA2 Missense_Mutation p.F704L 0.23 deleterious(0) benign(0.269) TCGA-AA-3984-01 14 47687280 47687280 T G MDGA2 Missense_Mutation p.K180T 0.33 deleterious(0) benign(0.23) TCGA-AA-3984-01 14 50081362 50081362 A C LRR1 3'UTR 0.21 TCGA-AA-3984-01 14 50092549 50092549 T G DNAAF2 Missense_Mutation p.K742T 0.09 deleterious(0.01) possibly_damaging(0.448) TCGA-AA-3984-01 14 50100069 50100069 T G DNAAF2 Missense_Mutation p.K600T 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 50100175 50100175 C T DNAAF2 Missense_Mutation p.D565N 0.09 tolerated(0.12) possibly_damaging(0.448) TCGA-AA-3984-01 14 50799081 50799081 T G CDKL1 Missense_Mutation p.N290H 0.32 tolerated(0.09) benign(0.269) TCGA-AA-3984-01 14 50845125 50845125 G A CDKL1 Intron 0.19 TCGA-AA-3984-01 14 51345468 51345468 G A ABHD12B Missense_Mutation p.A80T 0.20 tolerated(0.37) benign(0.028) TCGA-AA-3984-01 14 51446149 51446149 C A TRIM9 Nonsense_Mutation p.E676* 0.31 TCGA-AA-3984-01 14 53325157 53325157 T G FERMT2 Missense_Mutation p.K668Q 0.30 tolerated(0.07) probably_damaging(0.991) TCGA-AA-3984-01 14 55168925 55168925 A G SAMD4A Silent p.E114E 0.10 TCGA-AA-3984-01 14 55313815 55313815 A G GCH1 Splice_Site p.X181_splice 0.10 TCGA-AA-3984-01 14 55477174 55477174 C A WDHD1 Missense_Mutation p.G65V 0.30 deleterious(0) possibly_damaging(0.714) TCGA-AA-3984-01 14 55513708 55513708 T G SOCS4 3'UTR 0.24 TCGA-AA-3984-01 14 55625286 55625286 G A DLGAP5 Silent p.F609F 0.28 TCGA-AA-3984-01 14 55817208 55817208 A C FBXO34 Missense_Mutation p.N34H 0.17 tolerated(0.2) benign(0.001) TCGA-AA-3984-01 14 55819859 55819859 G A FBXO34 3'UTR 0.29 TCGA-AA-3984-01 14 55890952 55890952 G A TBPL2 Missense_Mutation p.P326S 0.28 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 14 57046786 57046786 G A TMEM260 Missense_Mutation p.D52N 0.35 deleterious(0.05) probably_damaging(0.992) TCGA-AA-3984-01 14 57269042 57269042 C T OTX2 Missense_Mutation p.R102H 0.28 deleterious(0.01) probably_damaging(0.909) TCGA-AA-3984-01 14 57270953 57270953 G A OTX2 Nonsense_Mutation p.R76* 0.33 TCGA-AA-3984-01 14 57741091 57741091 C T AP5M1 Silent p.F68F 0.23 TCGA-AA-3984-01 14 58718946 58718946 C T PSMA3 Missense_Mutation p.R72W 0.32 deleterious(0.01) benign(0.046) TCGA-AA-3984-01 14 58785494 58785494 G A ARID4A Silent p.T140T 0.34 TCGA-AA-3984-01 14 58924670 58924670 C T KIAA0586 Missense_Mutation p.S572L 0.26 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 14 58954606 58954606 A T KIAA0586 Silent p.G1155G 0.19 TCGA-AA-3984-01 14 59112099 59112099 A C DACT1 Missense_Mutation p.K253T 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 59112352 59112352 A C DACT1 Missense_Mutation p.K337N 0.29 deleterious(0) probably_damaging(0.92) TCGA-AA-3984-01 14 59114329 59114329 C T DACT1 3'Flank 0.07 TCGA-AA-3984-01 14 60212466 60212466 G A RTN1 Silent p.D325D 0.31 TCGA-AA-3984-01 14 60213048 60213048 A C RTN1 Missense_Mutation p.N131K 0.21 tolerated(0.08) benign(0.164) TCGA-AA-3984-01 14 60923651 60923651 T G C14orf39 Missense_Mutation p.T448P 0.08 deleterious(0.04) benign(0.127) TCGA-AA-3984-01 14 61115810 61115810 A G SIX1 Missense_Mutation p.F33S 0.39 deleterious(0) probably_damaging(0.972) TCGA-AA-3984-01 14 61180304 61180304 C T SIX4 Missense_Mutation p.E723K 0.22 deleterious_low_confidence(0) benign(0.129) TCGA-AA-3984-01 14 61497195 61497195 G A SLC38A6 Missense_Mutation p.E146K 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 14 62014486 62014486 G A RP11-47I22.4 Missense_Mutation p.R101H 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 14 62567220 62567220 T C SYT16 Missense_Mutation p.V578A 0.23 deleterious(0) benign(0.062) TCGA-AA-3984-01 14 64518349 64518349 C A SYNE2 Missense_Mutation p.S2573Y 0.10 benign(0.413) TCGA-AA-3984-01 14 64519940 64519940 G T SYNE2 Missense_Mutation p.K3103N 0.16 possibly_damaging(0.56) TCGA-AA-3984-01 14 64520073 64520073 G A SYNE2 Missense_Mutation p.E3148K 0.30 benign(0.031) TCGA-AA-3984-01 14 64560156 64560156 A G SYNE2 Silent p.E4022E 0.13 TCGA-AA-3984-01 14 64596828 64596828 C T SYNE2 Silent p.F4734F 0.14 TCGA-AA-3984-01 14 64628928 64628928 C T SYNE2 Silent p.L5411L 0.13 TCGA-AA-3984-01 14 64735613 64735613 A C ESR2 Missense_Mutation p.I184M 0.30 tolerated(0.54) benign(0.292) TCGA-AA-3984-01 14 64936456 64936456 T G AKAP5 3'UTR 0.14 TCGA-AA-3984-01 14 64953601 64953601 C A ZBTB25 3'UTR 0.31 TCGA-AA-3984-01 14 64988317 64988317 A G ZBTB1 Missense_Mutation p.D32G 0.14 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 14 65417071 65417071 C T RAB15 Missense_Mutation p.G173S 0.22 deleterious(0.02) benign(0.082) TCGA-AA-3984-01 14 67746042 67746042 G A MPP5 Missense_Mutation p.R52Q 0.24 tolerated(0.19) benign(0.439) TCGA-AA-3984-01 14 67746338 67746338 T C MPP5 Intron 0.33 TCGA-AA-3984-01 14 68118113 68118113 G A VTI1B Missense_Mutation p.R230C 0.22 deleterious(0) possibly_damaging(0.667) TCGA-AA-3984-01 14 68189309 68189309 G C RDH12 5'UTR 0.13 TCGA-AA-3984-01 14 68251899 68251899 G T ZFYVE26 Missense_Mutation p.L1134I 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3984-01 14 68272272 68272272 C A ZFYVE26 Nonsense_Mutation p.E361* 0.12 TCGA-AA-3984-01 14 69262389 69262389 T A ZFP36L1 5'Flank 0.26 TCGA-AA-3984-01 14 69967355 69967355 C T PLEKHD1 Missense_Mutation p.A102V 0.39 tolerated(0.17) benign(0.229) TCGA-AA-3984-01 14 69993433 69993433 C T PLEKHD1 Missense_Mutation p.R315C 0.21 deleterious(0) possibly_damaging(0.807) TCGA-AA-3984-01 14 70243064 70243064 T C SLC10A1 Missense_Mutation p.T329A 0.15 tolerated_low_confidence(0.5) benign(0.002) TCGA-AA-3984-01 14 70712719 70712719 A G ADAM21P1 RNA 0.11 TCGA-AA-3984-01 14 70714389 70714389 C T ADAM21P1 RNA 0.25 TCGA-AA-3984-01 14 70795916 70795916 T G COX16 Missense_Mutation p.K60T 0.37 tolerated(0.23) benign(0.057) TCGA-AA-3984-01 14 70925425 70925425 C T ADAM21 Silent p.I403I 0.16 TCGA-AA-3984-01 14 70989467 70989467 C A ADAM20 Missense_Mutation p.G720C 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 71134289 71134289 C T TTC9 Missense_Mutation p.L139F 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 71137807 71137807 C T TTC9 Missense_Mutation p.R202W 0.07 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 14 71443884 71443884 A G PCNX Missense_Mutation p.D277G 0.11 deleterious_low_confidence(0.02) benign(0.16) TCGA-AA-3984-01 14 71540387 71540387 C T PCNX Nonsense_Mutation p.R1660* 0.27 TCGA-AA-3984-01 14 72985128 72985128 C A RGS6 Silent p.I387I 0.40 TCGA-AA-3984-01 14 73586446 73586446 T G RBM25 Missense_Mutation p.F822C 0.22 probably_damaging(0.926) TCGA-AA-3984-01 14 73978811 73978811 C T HEATR4 Missense_Mutation p.S486N 0.06 tolerated(0.97) benign(0.01) TCGA-AA-3984-01 14 74514718 74514718 G A CCDC176 Missense_Mutation p.A245T 0.28 tolerated(0.3) benign(0.003) TCGA-AA-3984-01 14 74753229 74753229 G T ABCD4 Missense_Mutation p.H586N 0.30 deleterious(0.01) possibly_damaging(0.847) TCGA-AA-3984-01 14 74824077 74824077 G T VRTN Missense_Mutation p.K197N 0.16 deleterious(0.05) possibly_damaging(0.77) TCGA-AA-3984-01 14 74825943 74825943 T G VRTN 3'UTR 0.27 TCGA-AA-3984-01 14 74826687 74826687 G T VRTN 3'UTR 0.26 TCGA-AA-3984-01 14 75245228 75245228 A C YLPM1 Missense_Mutation p.K318Q 0.29 unknown(0) TCGA-AA-3984-01 14 75264625 75264625 G T YLPM1 Missense_Mutation p.K875N 0.29 probably_damaging(0.99) TCGA-AA-3984-01 14 75264710 75264710 G A YLPM1 Missense_Mutation p.D904N 0.22 benign(0.05) TCGA-AA-3984-01 14 75264742 75264742 C A YLPM1 Silent p.V914V 0.22 TCGA-AA-3984-01 14 75330462 75330462 C T PROX2 Missense_Mutation p.E26K 0.34 tolerated(0.27) benign(0.04) TCGA-AA-3984-01 14 75513894 75513894 C T MLH3 Missense_Mutation p.S822N 0.10 tolerated(0.19) benign(0.009) TCGA-AA-3984-01 14 75567726 75567726 G A NEK9 Silent p.C657C 0.33 TCGA-AA-3984-01 14 76045674 76045674 C A FLVCR2 Missense_Mutation p.A120D 0.10 tolerated(0.16) benign(0.008) TCGA-AA-3984-01 14 76620609 76620609 A C GPATCH2L Intron 0.40 TCGA-AA-3984-01 14 76644334 76644334 G T GPATCH2L Missense_Mutation p.K352N 0.20 tolerated(0.13) probably_damaging(0.978) TCGA-AA-3984-01 14 77332336 77332336 C T C14orf166B Missense_Mutation p.T426M 0.36 deleterious(0.01) possibly_damaging(0.513) TCGA-AA-3984-01 14 77709270 77709270 C A TMEM63C Missense_Mutation p.F404L 0.21 tolerated(0.39) benign(0.213) TCGA-AA-3984-01 14 77942073 77942073 C T ISM2 Silent p.T527T 0.07 TCGA-AA-3984-01 14 79117586 79117586 T G NRXN3 Missense_Mutation p.F7V 0.23 tolerated(0.13) benign(0.42) TCGA-AA-3984-01 14 79434674 79434674 G A NRXN3 Missense_Mutation p.E670K 0.12 deleterious(0.05) possibly_damaging(0.774) TCGA-AA-3984-01 14 80327922 80327922 C T NRXN3 Intron 0.30 TCGA-AA-3984-01 14 81227947 81227947 A G CEP128 Missense_Mutation p.I796T 0.27 deleterious(0.04) benign(0.371) TCGA-AA-3984-01 14 81302676 81302676 T C CEP128 Silent p.E310E 0.23 TCGA-AA-3984-01 14 81667943 81667943 T G GTF2A1 Missense_Mutation p.N133H 0.28 tolerated(0.06) benign(0.269) TCGA-AA-3984-01 14 81744549 81744549 A C STON2 Missense_Mutation p.F369C 0.23 deleterious(0.03) probably_damaging(0.983) TCGA-AA-3984-01 14 86088558 86088558 G T FLRT2 Nonsense_Mutation p.E234* 0.14 TCGA-AA-3984-01 14 86088904 86088904 C T FLRT2 Missense_Mutation p.A349V 0.30 tolerated(0.21) benign(0.11) TCGA-AA-3984-01 14 86091032 86091032 T C FLRT2 3'UTR 0.29 TCGA-AA-3984-01 14 86091184 86091184 G T FLRT2 3'UTR 0.23 TCGA-AA-3984-01 14 86093487 86093487 C A FLRT2 3'UTR 0.31 TCGA-AA-3984-01 14 86094191 86094191 T G FLRT2 3'UTR 0.31 TCGA-AA-3984-01 14 89061269 89061269 C A ZC3H14 Intron 0.30 TCGA-AA-3984-01 14 89192995 89192995 T G EML5 Missense_Mutation p.L359F 0.34 deleterious(0.01) probably_damaging(0.937) TCGA-AA-3984-01 14 89336480 89336480 C T TTC8 Silent p.I329I 0.11 TCGA-AA-3984-01 14 90650504 90650504 C T KCNK13 Silent p.I128I 0.24 TCGA-AA-3984-01 14 91123616 91123616 G A TTC7B Missense_Mutation p.R415C 0.23 tolerated(0.15) possibly_damaging(0.79) TCGA-AA-3984-01 14 92126304 92126304 C T CATSPERB Missense_Mutation p.G437S 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 92472006 92472006 C A TRIP11 Missense_Mutation p.D772Y 0.31 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 14 92477371 92477371 C T TRIP11 Missense_Mutation p.E425K 0.08 tolerated(0.14) benign(0.215) TCGA-AA-3984-01 14 92480762 92480762 T C TRIP11 Missense_Mutation p.D328G 0.25 deleterious(0.05) possibly_damaging(0.765) TCGA-AA-3984-01 14 92909064 92909064 C T SLC24A4 Silent p.F162F 0.21 TCGA-AA-3984-01 14 92920320 92920320 C T SLC24A4 Silent p.F319F 0.14 TCGA-AA-3984-01 14 93119237 93119237 T C RIN3 Missense_Mutation p.Y615H 0.27 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 14 93125602 93125602 C T RIN3 Missense_Mutation p.S708L 0.26 deleterious(0) possibly_damaging(0.862) TCGA-AA-3984-01 14 93730195 93730195 G A BTBD7 Missense_Mutation p.S436L 0.27 deleterious(0) possibly_damaging(0.793) TCGA-AA-3984-01 14 93754985 93754985 A G BTBD7 Intron 0.20 TCGA-AA-3984-01 14 94083572 94083572 G A UNC79 Silent p.P1205P 0.31 TCGA-AA-3984-01 14 94594131 94594131 G T IFI27L2 3'UTR 0.29 TCGA-AA-3984-01 14 94674892 94674892 C T PPP4R4 Missense_Mutation p.P95S 0.21 tolerated(0.11) possibly_damaging(0.885) TCGA-AA-3984-01 14 94718127 94718127 T G PPP4R4 Missense_Mutation p.L587V 0.22 tolerated(0.25) benign(0.227) TCGA-AA-3984-01 14 94964562 94964562 T G SERPINA12 Missense_Mutation p.K58T 0.08 deleterious(0.02) possibly_damaging(0.724) TCGA-AA-3984-01 14 95569832 95569832 A T DICER1 Missense_Mutation p.L1301M 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 14 95577681 95577681 C T DICER1 Silent p.T743T 0.31 TCGA-AA-3984-01 14 96779454 96779454 T C ATG2B Missense_Mutation p.T1264A 0.25 deleterious(0) probably_damaging(0.977) TCGA-AA-3984-01 14 97321648 97321648 G A VRK1 Missense_Mutation p.D222N 0.19 tolerated(1) benign(0.013) TCGA-AA-3984-01 14 97347641 97347641 G A VRK1 3'UTR 0.21 TCGA-AA-3984-01 14 99879111 99879111 A G SETD3 Intron 0.25 TCGA-AA-3984-01 15 100252748 100252748 G A MEF2A Silent p.P424P 0.39 TCGA-AA-3984-01 15 100589186 100589186 T C ADAMTS17 Missense_Mutation p.T823A 0.33 tolerated(0.05) benign(0.069) TCGA-AA-3984-01 15 101434258 101434258 G A ALDH1A3 Missense_Mutation p.A213T 0.25 deleterious(0) benign(0.118) TCGA-AA-3984-01 15 101550751 101550751 T G LRRK1 Missense_Mutation p.N362K 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 15 101718211 101718211 G A CHSY1 Silent p.A597A 0.41 TCGA-AA-3984-01 15 101718369 101718369 C T CHSY1 Missense_Mutation p.D545N 0.31 deleterious(0.03) possibly_damaging(0.756) TCGA-AA-3984-01 15 101847524 101847524 G A PCSK6 Silent p.D901D 0.28 TCGA-AA-3984-01 15 101972253 101972253 C T PCSK6 Missense_Mutation p.R151Q 0.08 tolerated(0.16) benign(0.024) TCGA-AA-3984-01 15 20658880 20658880 C T HERC2P3 RNA 0.24 TCGA-AA-3984-01 15 21071330 21071330 G A POTEB2 Missense_Mutation p.P94L 0.13 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 15 21071384 21071384 C T POTEB2 Missense_Mutation p.G76D 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-AA-3984-01 15 22842086 22842086 G A TUBGCP5 Silent p.Q175Q 0.29 TCGA-AA-3984-01 15 22848960 22848960 G A TUBGCP5 Missense_Mutation p.G336E 0.24 tolerated(0.15) possibly_damaging(0.72) TCGA-AA-3984-01 15 22862969 22862969 T C TUBGCP5 Missense_Mutation p.F664L 0.10 tolerated(0.21) benign(0.02) TCGA-AA-3984-01 15 23006201 23006201 A C NIPA2 3'UTR 0.29 TCGA-AA-3984-01 15 23445462 23445462 A C AC100757.1 3'Flank 0.29 TCGA-AA-3984-01 15 23889675 23889675 G A MAGEL2 Missense_Mutation p.A469V 0.22 tolerated(1) benign(0.005) TCGA-AA-3984-01 15 24927203 24927203 A G NPAP1 3'UTR 0.15 TCGA-AA-3984-01 15 25616577 25616577 T G UBE3A Missense_Mutation p.K251N 0.23 tolerated(0.5) benign(0.004) TCGA-AA-3984-01 15 26026211 26026211 C T ATP10A Silent p.E203E 0.38 TCGA-AA-3984-01 15 26108004 26108004 G A ATP10A Silent p.F80F 0.19 TCGA-AA-3984-01 15 27725865 27725865 C A GABRG3 Nonsense_Mutation p.S215* 0.38 TCGA-AA-3984-01 15 28117030 28117030 T C OCA2 Silent p.E706E 0.37 TCGA-AA-3984-01 15 28474633 28474633 C A HERC2 Missense_Mutation p.R1698I 0.20 benign(0.01) TCGA-AA-3984-01 15 28525289 28525289 C A HERC2 Missense_Mutation p.R156I 0.29 benign(0.004) TCGA-AA-3984-01 15 28912555 28912555 G A HERC2P9 RNA 0.06 TCGA-AA-3984-01 15 28929417 28929417 C A RP11-578F21.2 5'Flank 0.33 TCGA-AA-3984-01 15 29385292 29385292 G A APBA2 Missense_Mutation p.E362K 0.17 deleterious(0.01) benign(0.222) TCGA-AA-3984-01 15 29409318 29409318 G T APBA2 Missense_Mutation p.E744D 0.35 tolerated(0.08) benign(0.027) TCGA-AA-3984-01 15 29415569 29415569 G A FAM189A1 Silent p.F531F 0.26 TCGA-AA-3984-01 15 30659720 30659720 G A CHRFAM7A Silent p.F207F 0.11 TCGA-AA-3984-01 15 31329943 31329943 C T TRPM1 Missense_Mutation p.A865T 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3984-01 15 31341662 31341662 G A TRPM1 Silent p.V513V 0.36 TCGA-AA-3984-01 15 31354787 31354787 C A TRPM1 Nonsense_Mutation p.E379* 0.29 TCGA-AA-3984-01 15 32928050 32928050 C T ARHGAP11A Nonsense_Mutation p.R473* 0.23 TCGA-AA-3984-01 15 33025698 33025698 G A GREM1 3'UTR 0.15 TCGA-AA-3984-01 15 33025797 33025797 T C GREM1 3'UTR 0.33 TCGA-AA-3984-01 15 33091137 33091137 C T FMN1 Missense_Mutation p.R1110Q 0.14 tolerated(0.65) benign(0.003) TCGA-AA-3984-01 15 33878277 33878277 C T RYR3 Missense_Mutation p.S583L 0.09 probably_damaging(0.999) TCGA-AA-3984-01 15 33916126 33916126 G T RYR3 Nonsense_Mutation p.E826* 0.25 TCGA-AA-3984-01 15 34064243 34064243 G A RYR3 Missense_Mutation p.R2980Q 0.12 benign(0.275) TCGA-AA-3984-01 15 34130853 34130853 G T RYR3 Missense_Mutation p.K4224N 0.12 probably_damaging(0.996) TCGA-AA-3984-01 15 34135746 34135746 G A RYR3 Missense_Mutation p.A4423T 0.24 probably_damaging(0.932) TCGA-AA-3984-01 15 34145777 34145777 C A RYR3 Missense_Mutation p.L4565I 0.19 benign(0.065) TCGA-AA-3984-01 15 34376568 34376568 T G EMC7 Missense_Mutation p.K232N 0.26 tolerated(0.08) unknown(0) TCGA-AA-3984-01 15 35045290 35045290 C T GJD2 Missense_Mutation p.D119N 0.09 tolerated(0.44) benign(0.118) TCGA-AA-3984-01 15 35236512 35236512 G T AQR Missense_Mutation p.L150I 0.22 deleterious(0.05) benign(0.125) TCGA-AA-3984-01 15 37385916 37385916 C T MEIS2 Missense_Mutation p.D169N 0.07 deleterious(0.03) possibly_damaging(0.773) TCGA-AA-3984-01 15 38776963 38776963 T C FAM98B 3'UTR 0.12 TCGA-AA-3984-01 15 38791088 38791088 G A RASGRP1 Nonsense_Mutation p.R594* 0.30 TCGA-AA-3984-01 15 39882090 39882090 G A THBS1 Missense_Mutation p.D671N 0.14 tolerated(0.13) possibly_damaging(0.62) TCGA-AA-3984-01 15 40512795 40512795 C A BUB1B Missense_Mutation p.F996L 0.31 tolerated(0.42) benign(0.02) TCGA-AA-3984-01 15 40907561 40907561 T C CASC5 Missense_Mutation p.Y129H 0.32 tolerated(0.48) benign(0.006) TCGA-AA-3984-01 15 40917277 40917277 A G CASC5 Missense_Mutation p.I1631M 0.36 tolerated(0.26) benign(0.045) TCGA-AA-3984-01 15 41023337 41023337 C T RAD51 Silent p.F328F 0.14 TCGA-AA-3984-01 15 41476307 41476307 T G EXD1 Missense_Mutation p.K456T 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.535) TCGA-AA-3984-01 15 41641370 41641370 A G NUSAP1 Silent p.R79R 0.09 TCGA-AA-3984-01 15 42021423 42021423 G A MGA Missense_Mutation p.R1240Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 15 42028648 42028648 A G MGA Missense_Mutation p.K1396E 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 15 42058235 42058235 T C MGA Missense_Mutation p.V2652A 0.18 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 15 42106899 42106899 T G MAPKBP1 Missense_Mutation p.S384A 0.31 deleterious(0.01) benign(0.215) TCGA-AA-3984-01 15 42201933 42201933 A C EHD4 Missense_Mutation p.I351M 0.28 deleterious(0) probably_damaging(0.991) TCGA-AA-3984-01 15 42454281 42454281 C A VPS39 Missense_Mutation p.K803N 0.26 tolerated(0.2) benign(0.016) TCGA-AA-3984-01 15 42823714 42823714 G A SNAP23 3'UTR 0.19 TCGA-AA-3984-01 15 42836224 42836224 A G LRRC57 3'UTR 0.26 TCGA-AA-3984-01 15 43069361 43069361 A G TTBK2 Missense_Mutation p.V426A 0.17 tolerated(0.18) possibly_damaging(0.9) TCGA-AA-3984-01 15 43476645 43476645 G A TMEM62 Missense_Mutation p.G598D 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 15 43476823 43476823 G A TMEM62 3'UTR 0.29 TCGA-AA-3984-01 15 43531044 43531044 T C TGM5 Missense_Mutation p.D439G 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 15 43661272 43661272 C T ZSCAN29 Silent p.P124P 0.13 TCGA-AA-3984-01 15 43668391 43668391 C A TUBGCP4 Missense_Mutation p.F58L 0.25 deleterious(0.01) probably_damaging(0.925) TCGA-AA-3984-01 15 43814613 43814613 A G MAP1A Silent p.K314K 0.36 TCGA-AA-3984-01 15 43816263 43816263 G T MAP1A Missense_Mutation p.K864N 0.30 probably_damaging(0.999) TCGA-AA-3984-01 15 44057758 44057758 A G PDIA3 Missense_Mutation p.E238G 0.19 tolerated(0.05) benign(0.007) TCGA-AA-3984-01 15 44063364 44063364 T C PDIA3 Missense_Mutation p.V489A 0.12 tolerated(0.14) benign(0.004) TCGA-AA-3984-01 15 44116844 44116844 G T MFAP1 5'UTR 0.35 TCGA-AA-3984-01 15 44131850 44131850 G A WDR76 Missense_Mutation p.R219Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 15 45250614 45250614 T G C15orf43 Missense_Mutation p.F64V 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 15 45365580 45365580 C T SORD Missense_Mutation p.S309L 0.11 tolerated(0.1) possibly_damaging(0.678) TCGA-AA-3984-01 15 45464172 45464172 C T SHF Missense_Mutation p.D332N 0.36 deleterious(0) possibly_damaging(0.552) TCGA-AA-3984-01 15 48414091 48414091 G A SLC24A5 Silent p.E53E 0.21 TCGA-AA-3984-01 15 48414318 48414318 T C SLC24A5 Intron 0.22 TCGA-AA-3984-01 15 48458201 48458201 C A MYEF2 Nonsense_Mutation p.E152* 0.32 TCGA-AA-3984-01 15 48593571 48593571 C A SLC12A1 Silent p.L1052L 0.09 TCGA-AA-3984-01 15 48703282 48703282 C A FBN1 Nonsense_Mutation p.E2841* 0.07 TCGA-AA-3984-01 15 48703477 48703477 G A FBN1 Nonsense_Mutation p.R2776* 0.29 TCGA-AA-3984-01 15 48726809 48726809 G A FBN1 Missense_Mutation p.P2200S 0.20 benign(0.39) TCGA-AA-3984-01 15 48780431 48780431 G A FBN1 Silent p.D1072D 0.22 TCGA-AA-3984-01 15 48829905 48829905 G A FBN1 Silent p.V213V 0.33 TCGA-AA-3984-01 15 49309088 49309088 G T SECISBP2L Missense_Mutation p.A459D 0.29 tolerated(0.1) probably_damaging(0.999) TCGA-AA-3984-01 15 49320862 49320862 C T SECISBP2L Missense_Mutation p.A228T 0.29 deleterious(0.04) benign(0.14) TCGA-AA-3984-01 15 49663591 49663591 C T FAM227B Missense_Mutation p.D340N 0.10 tolerated(0.16) benign(0.147) TCGA-AA-3984-01 15 50168617 50168617 C T ATP8B4 Missense_Mutation p.G962E 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 15 50339641 50339641 C T ATP8B4 Silent p.S36S 0.32 TCGA-AA-3984-01 15 50474987 50474987 G A SLC27A2 Nonsense_Mutation p.W121* 0.33 TCGA-AA-3984-01 15 50884761 50884761 G T TRPM7 Nonsense_Mutation p.S1224* 0.28 TCGA-AA-3984-01 15 51204319 51204319 G A AP4E1 Silent p.A65A 0.08 TCGA-AA-3984-01 15 51696661 51696661 A G GLDN Missense_Mutation p.T456A 0.24 tolerated(0.1) possibly_damaging(0.888) TCGA-AA-3984-01 15 51792098 51792098 T G DMXL2 Missense_Mutation p.E1108A 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 15 51828437 51828437 C T DMXL2 Missense_Mutation p.R747Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 15 52011632 52011632 T C SCG3 Missense_Mutation p.F439S 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3984-01 15 52567844 52567844 G A MYO5C Missense_Mutation p.A174V 0.13 deleterious(0) benign(0.029) TCGA-AA-3984-01 15 52659253 52659253 G A MYO5A Silent p.I1045I 0.22 TCGA-AA-3984-01 15 52668596 52668596 G A MYO5A Missense_Mutation p.R790W 0.23 deleterious(0) possibly_damaging(0.844) TCGA-AA-3984-01 15 53907717 53907717 G A WDR72 Nonsense_Mutation p.R896* 0.25 TCGA-AA-3984-01 15 53907819 53907819 A C WDR72 Missense_Mutation p.L862V 0.34 deleterious(0.03) probably_damaging(0.937) TCGA-AA-3984-01 15 54305645 54305645 G A UNC13C Missense_Mutation p.R182Q 0.29 deleterious_low_confidence(0) benign(0.44) TCGA-AA-3984-01 15 54919261 54919261 G T UNC13C Nonsense_Mutation p.E2199* 0.31 TCGA-AA-3984-01 15 55965647 55965647 T C PRTG Missense_Mutation p.T592A 0.08 tolerated(1) benign(0.006) TCGA-AA-3984-01 15 56535334 56535334 C A RFX7 Missense_Mutation p.K50N 0.25 deleterious(0) probably_damaging(0.991) TCGA-AA-3984-01 15 56739117 56739117 C A MNS1 Missense_Mutation p.K126N 0.30 tolerated(0.14) possibly_damaging(0.719) TCGA-AA-3984-01 15 57544625 57544625 C T TCF12 Nonsense_Mutation p.R399* 0.10 TCGA-AA-3984-01 15 57953710 57953710 G T GCOM1 Missense_Mutation p.K394N 0.16 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 15 58840565 58840565 C T LIPC Missense_Mutation p.S282L 0.07 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 15 59500058 59500058 G A LDHAL6B Missense_Mutation p.D307N 0.31 tolerated(0.14) possibly_damaging(0.753) TCGA-AA-3984-01 15 60806854 60806854 G A RORA Nonsense_Mutation p.R162* 0.12 TCGA-AA-3984-01 15 62273579 62273579 T G VPS13C Missense_Mutation p.K710Q 0.31 tolerated(0.09) benign(0.014) TCGA-AA-3984-01 15 62362011 62362011 C A C2CD4A 3'UTR 0.09 TCGA-AA-3984-01 15 62362326 62362326 T G C2CD4A 3'UTR 0.29 TCGA-AA-3984-01 15 63063182 63063182 A C TLN2 Missense_Mutation p.Y1739S 0.24 deleterious(0.01) benign(0.326) TCGA-AA-3984-01 15 63116223 63116223 T G TLN2 Intron 0.27 TCGA-AA-3984-01 15 63353119 63353119 C T TPM1 Missense_Mutation p.R182W 0.21 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 15 63882927 63882927 A G USP3 Missense_Mutation p.T489A 0.14 deleterious(0) probably_damaging(0.914) TCGA-AA-3984-01 15 63893983 63893983 G T FBXL22 3'UTR 0.33 TCGA-AA-3984-01 15 63944671 63944671 C T HERC1 Missense_Mutation p.V3454I 0.29 probably_damaging(0.997) TCGA-AA-3984-01 15 63946356 63946356 T A HERC1 Nonsense_Mutation p.K3418* 0.29 TCGA-AA-3984-01 15 64448279 64448279 G T PPIB Silent p.I198I 0.29 TCGA-AA-3984-01 15 65041331 65041331 C T RBPMS2 Missense_Mutation p.E96K 0.29 deleterious(0.01) probably_damaging(0.936) TCGA-AA-3984-01 15 65489134 65489134 G A CILP Missense_Mutation p.R1164C 0.26 deleterious(0.02) possibly_damaging(0.513) TCGA-AA-3984-01 15 65759140 65759140 G T DPP8 Missense_Mutation p.F583L 0.37 tolerated(0.27) benign(0.004) TCGA-AA-3984-01 15 65916610 65916610 T G SLC24A1 Missense_Mutation p.S64R 0.30 possibly_damaging(0.766) TCGA-AA-3984-01 15 66025127 66025127 G T DENND4A Missense_Mutation p.P357H 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 15 66599179 66599179 G A DIS3L Missense_Mutation p.R104Q 0.08 tolerated(0.1) benign(0.298) TCGA-AA-3984-01 15 66618493 66618493 G T DIS3L Missense_Mutation p.K664N 0.31 tolerated(0.08) benign(0.018) TCGA-AA-3984-01 15 66812982 66812982 G T ZWILCH Missense_Mutation p.R192I 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 15 67457330 67457330 G A SMAD3 Missense_Mutation p.E102K 0.18 deleterious(0.02) possibly_damaging(0.901) TCGA-AA-3984-01 15 67477167 67477167 G A SMAD3 Missense_Mutation p.G325D 0.32 deleterious(0.01) benign(0.137) TCGA-AA-3984-01 15 67636404 67636404 T G IQCH Missense_Mutation p.I171S 0.24 deleterious(0) possibly_damaging(0.65) TCGA-AA-3984-01 15 67665727 67665727 G A IQCH Missense_Mutation p.R443H 0.29 tolerated(0.21) probably_damaging(0.999) TCGA-AA-3984-01 15 67855642 67855642 G A MAP2K5 Missense_Mutation p.R69Q 0.25 deleterious(0.01) probably_damaging(0.94) TCGA-AA-3984-01 15 69349006 69349006 C T NOX5 Silent p.F756F 0.29 TCGA-AA-3984-01 15 69548687 69548687 A G GLCE Missense_Mutation p.N181S 0.26 deleterious(0.04) probably_damaging(0.992) TCGA-AA-3984-01 15 70351072 70351072 G A TLE3 Missense_Mutation p.A283V 0.14 tolerated(0.21) benign(0.05) TCGA-AA-3984-01 15 70961015 70961015 C T UACA Missense_Mutation p.E670K 0.27 tolerated(0.28) benign(0.215) TCGA-AA-3984-01 15 70976696 70976696 G A UACA Missense_Mutation p.A231V 0.27 tolerated(0.15) benign(0.276) TCGA-AA-3984-01 15 71341894 71341894 T G LRRC49 Missense_Mutation p.I673M 0.26 tolerated(0.97) benign(0.006) TCGA-AA-3984-01 15 72122637 72122637 G A MYO9A Missense_Mutation p.R2285C 0.21 deleterious(0.02) possibly_damaging(0.667) TCGA-AA-3984-01 15 72144598 72144598 G A MYO9A Missense_Mutation p.A2117V 0.31 tolerated(1) benign(0.026) TCGA-AA-3984-01 15 72146846 72146846 C T MYO9A Missense_Mutation p.R2073Q 0.26 tolerated(0.1) probably_damaging(0.997) TCGA-AA-3984-01 15 72191194 72191194 C T MYO9A Missense_Mutation p.R1217Q 0.08 tolerated_low_confidence(0.09) benign(0.03) TCGA-AA-3984-01 15 72338405 72338405 C T MYO9A Missense_Mutation p.R167Q 0.21 deleterious(0.01) possibly_damaging(0.521) TCGA-AA-3984-01 15 72954784 72954784 C T GOLGA6B Nonsense_Mutation p.R347* 0.08 TCGA-AA-3984-01 15 73590697 73590697 C T NEO1 Nonsense_Mutation p.R1304* 0.11 TCGA-AA-3984-01 15 73766191 73766191 G T C15orf60 Nonsense_Mutation p.E60* 0.26 TCGA-AA-3984-01 15 74327802 74327802 G A PML Intron 0.19 TCGA-AA-3984-01 15 74425315 74425315 G A ISLR2 Missense_Mutation p.V74I 0.26 tolerated(0.27) probably_damaging(0.993) TCGA-AA-3984-01 15 74469076 74469076 C T ISLR 3'UTR 0.12 TCGA-AA-3984-01 15 75012837 75012837 C T CYP1A1 Missense_Mutation p.R511H 0.13 deleterious(0) probably_damaging(0.962) TCGA-AA-3984-01 15 75093390 75093390 G A CSK Missense_Mutation p.V254M 0.20 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 15 75122506 75122506 T C CPLX3 Silent p.G96G 0.22 TCGA-AA-3984-01 15 75699432 75699432 T C SIN3A Silent p.K457K 0.34 TCGA-AA-3984-01 15 75977577 75977577 C T CSPG4 Missense_Mutation p.A1419T 0.27 tolerated(0.64) benign(0.001) TCGA-AA-3984-01 15 75982483 75982483 G A CSPG4 Missense_Mutation p.S308L 0.29 deleterious(0) possibly_damaging(0.8) TCGA-AA-3984-01 15 76191897 76191897 G A UBE2Q2 3'UTR 0.33 TCGA-AA-3984-01 15 76646303 76646303 G A SCAPER Missense_Mutation p.A1345V 0.08 deleterious(0.01) probably_damaging(0.959) TCGA-AA-3984-01 15 77241603 77241603 A C RCN2 3'UTR 0.32 TCGA-AA-3984-01 15 77906464 77906464 G A LINGO1 Silent p.I595I 0.07 TCGA-AA-3984-01 15 78211245 78211245 T C RP11-114H24.7 Intron 0.34 TCGA-AA-3984-01 15 78212353 78212353 G A RP11-114H24.7 Intron 0.22 TCGA-AA-3984-01 15 78214072 78214072 C T RP11-114H24.7 Intron 0.27 TCGA-AA-3984-01 15 78316614 78316614 C T TBC1D2B Missense_Mutation p.E452K 0.27 deleterious(0) possibly_damaging(0.762) TCGA-AA-3984-01 15 78395920 78395920 C T SH2D7 3'UTR 0.20 TCGA-AA-3984-01 15 79324549 79324549 G A RASGRF1 Silent p.F356F 0.27 TCGA-AA-3984-01 15 79614463 79614463 G A TMED3 Silent p.T187T 0.25 TCGA-AA-3984-01 15 79750652 79750652 C A KIAA1024 Silent p.S721S 0.26 TCGA-AA-3984-01 15 79760535 79760535 G T KIAA1024 Nonsense_Mutation p.E854* 0.20 TCGA-AA-3984-01 15 80845042 80845042 C T ARNT2 Missense_Mutation p.S339F 0.24 deleterious(0) probably_damaging(0.97) TCGA-AA-3984-01 15 81592044 81592044 C T IL16 Missense_Mutation p.R793C 0.30 deleterious(0) probably_damaging(0.97) TCGA-AA-3984-01 15 81637183 81637183 G T TMC3 Missense_Mutation p.P481H 0.36 deleterious(0.01) possibly_damaging(0.76) TCGA-AA-3984-01 15 82575314 82575314 C T FAM154B Missense_Mutation p.P370S 0.12 tolerated(0.07) benign(0.057) TCGA-AA-3984-01 15 83224763 83224763 G T CPEB1 Missense_Mutation p.A239D 0.34 deleterious(0.01) possibly_damaging(0.576) TCGA-AA-3984-01 15 83328419 83328419 T C AP3B2 Missense_Mutation p.T1048A 0.33 tolerated(0.13) benign(0.217) TCGA-AA-3984-01 15 83456048 83456048 C T FSD2 Missense_Mutation p.R32K 0.34 tolerated(0.07) benign(0.077) TCGA-AA-3984-01 15 83926833 83926833 T G BNC1 Missense_Mutation p.E782D 0.30 tolerated(0.63) benign(0.01) TCGA-AA-3984-01 15 84245410 84245410 G A SH3GL3 Missense_Mutation p.E181K 0.13 deleterious(0) possibly_damaging(0.624) TCGA-AA-3984-01 15 84539705 84539705 C A ADAMTSL3 Silent p.I318I 0.32 TCGA-AA-3984-01 15 84651878 84651878 C A ADAMTSL3 Missense_Mutation p.N1166K 0.09 tolerated(0.66) benign(0.001) TCGA-AA-3984-01 15 84694009 84694009 T G ADAMTSL3 Missense_Mutation p.S1493A 0.22 tolerated(0.12) benign(0.398) TCGA-AA-3984-01 15 85163836 85163836 T G ZSCAN2 Missense_Mutation p.F137C 0.34 tolerated(0.07) probably_damaging(0.995) TCGA-AA-3984-01 15 85165243 85165243 G T ZSCAN2 Missense_Mutation p.R606I 0.35 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 15 85326514 85326514 A C ZNF592 Missense_Mutation p.K203T 0.16 deleterious(0.04) possibly_damaging(0.628) TCGA-AA-3984-01 15 85407867 85407867 A C ALPK3 Missense_Mutation p.N1767T 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 15 85664166 85664166 C T PDE8A Silent p.L625L 0.29 TCGA-AA-3984-01 15 86123081 86123081 A C AKAP13 Missense_Mutation p.K594N 0.14 tolerated_low_confidence(0.42) benign(0.011) TCGA-AA-3984-01 15 86312095 86312095 T C KLHL25 Missense_Mutation p.K316R 0.29 tolerated(0.29) benign(0.001) TCGA-AA-3984-01 15 89018411 89018411 C T MRPS11 Missense_Mutation p.R118W 0.34 deleterious(0) probably_damaging(0.977) TCGA-AA-3984-01 15 89169654 89169654 A G AEN Missense_Mutation p.T72A 0.29 tolerated(0.68) benign(0) TCGA-AA-3984-01 15 89401981 89401981 C T ACAN Silent p.G2055G 0.29 TCGA-AA-3984-01 15 89401982 89401982 C T ACAN Nonsense_Mutation p.Q2056* 0.18 TCGA-AA-3984-01 15 89402509 89402509 G T ACAN Missense_Mutation p.E2231D 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-AA-3984-01 15 89449895 89449895 C T MFGE8 Missense_Mutation p.E168K 0.20 tolerated(1) benign(0.002) TCGA-AA-3984-01 15 89758308 89758308 C A RLBP1 Nonsense_Mutation p.E170* 0.22 TCGA-AA-3984-01 15 90281451 90281451 C T WDR93 Missense_Mutation p.R649C 0.09 tolerated(0.19) possibly_damaging(0.526) TCGA-AA-3984-01 15 90611561 90611561 G A ZNF710 Missense_Mutation p.E398K 0.13 tolerated(0.07) probably_damaging(0.972) TCGA-AA-3984-01 15 90814976 90814976 C T NGRN Nonsense_Mutation p.R278* 0.25 TCGA-AA-3984-01 15 90903783 90903783 T G ZNF774 Missense_Mutation p.C240W 0.31 deleterious(0) probably_damaging(0.981) TCGA-AA-3984-01 15 91510388 91510388 G A PRC1 Silent p.I612I 0.28 TCGA-AA-3984-01 15 91827399 91827399 G T SV2B Silent p.G552G 0.20 TCGA-AA-3984-01 15 93173457 93173457 C T FAM174B Missense_Mutation p.D155N 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 15 93492217 93492217 G T CHD2 Missense_Mutation p.K471N 0.34 deleterious(0.04) benign(0.227) TCGA-AA-3984-01 15 99472845 99472845 C T IGF1R Silent p.I947I 0.10 TCGA-AA-3984-01 15 99669621 99669621 A C SYNM Missense_Mutation p.E351D 0.27 deleterious(0.01) possibly_damaging(0.828) TCGA-AA-3984-01 15 99670140 99670140 C T SYNM Silent p.F524F 0.07 TCGA-AA-3984-01 15 99874239 99874239 G A LRRC28 Missense_Mutation p.R166Q 0.26 tolerated(0.06) possibly_damaging(0.699) TCGA-AA-3984-01 16 10032142 10032142 G T GRIN2A Silent p.I227I 0.27 TCGA-AA-3984-01 16 10775940 10775940 G A TEKT5 Missense_Mutation p.S258L 0.07 tolerated(0.08) benign(0.104) TCGA-AA-3984-01 16 10855248 10855248 G T NUBP1 Nonsense_Mutation p.E212* 0.11 TCGA-AA-3984-01 16 11004091 11004091 C T CIITA Missense_Mutation p.R955W 0.15 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 16 11051751 11051751 G T CLEC16A Missense_Mutation p.D65Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 16 11063123 11063123 C T CLEC16A Missense_Mutation p.S150L 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 16 11374695 11374695 G T PRM1 3'UTR 0.22 TCGA-AA-3984-01 16 11771833 11771833 A C SNN 3'UTR 0.12 TCGA-AA-3984-01 16 11870306 11870306 A G ZC3H7A Splice_Site p.X182_splice 0.28 TCGA-AA-3984-01 16 1258171 1258171 C T CACNA1H Missense_Mutation p.R1105C 0.22 deleterious(0) possibly_damaging(0.8) TCGA-AA-3984-01 16 1262114 1262114 C T CACNA1H Missense_Mutation p.R1579W 0.32 deleterious(0) possibly_damaging(0.847) TCGA-AA-3984-01 16 12798716 12798716 G A CPPED1 Silent p.F160F 0.22 TCGA-AA-3984-01 16 13002481 13002481 C T SHISA9 Intron 0.11 TCGA-AA-3984-01 16 14028144 14028144 G T ERCC4 Missense_Mutation p.A400S 0.10 tolerated(0.71) benign(0.003) TCGA-AA-3984-01 16 14340860 14340860 C T MKL2 Silent p.I581I 0.24 TCGA-AA-3984-01 16 14351960 14351960 T G MKL2 Missense_Mutation p.I852M 0.10 tolerated(0.06) possibly_damaging(0.642) TCGA-AA-3984-01 16 15186410 15186410 G A RRN3 Missense_Mutation p.R51W 0.10 deleterious(0) possibly_damaging(0.877) TCGA-AA-3984-01 16 15698249 15698249 C T KIAA0430 Missense_Mutation p.D1397N 0.11 tolerated(0.11) probably_damaging(0.978) TCGA-AA-3984-01 16 15876242 15876242 G T MYH11 Missense_Mutation p.F249L 0.22 probably_damaging(0.993) TCGA-AA-3984-01 16 16205239 16205239 T G ABCC1 Missense_Mutation p.L960R 0.19 deleterious(0.02) possibly_damaging(0.757) TCGA-AA-3984-01 16 16256866 16256866 G A ABCC6 Nonsense_Mutation p.R1164* 0.33 TCGA-AA-3984-01 16 17228570 17228570 A C XYLT1 Missense_Mutation p.F596C 0.29 deleterious(0) probably_damaging(0.91) TCGA-AA-3984-01 16 1747850 1747850 C T HN1L Missense_Mutation p.S125L 0.09 tolerated(0.35) benign(0.006) TCGA-AA-3984-01 16 19087139 19087139 C T COQ7 Missense_Mutation p.T155M 0.19 tolerated(0.1) benign(0.013) TCGA-AA-3984-01 16 19195370 19195370 C A SYT17 Missense_Mutation p.F284L 0.08 deleterious(0) possibly_damaging(0.76) TCGA-AA-3984-01 16 19455414 19455414 G T TMC5 Missense_Mutation p.R267I 0.27 deleterious(0) possibly_damaging(0.499) TCGA-AA-3984-01 16 19483496 19483496 G A TMC5 Nonsense_Mutation p.W623* 0.15 TCGA-AA-3984-01 16 19548121 19548121 G A CCP110 Missense_Mutation p.R377Q 0.09 tolerated(0.05) probably_damaging(0.979) TCGA-AA-3984-01 16 19838399 19838399 C T IQCK Missense_Mutation p.R248C 0.08 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 16 20043519 20043519 G T GPR139 Missense_Mutation p.F200L 0.35 tolerated(1) probably_damaging(0.987) TCGA-AA-3984-01 16 20451774 20451774 G T ACSM5 3'UTR 0.09 TCGA-AA-3984-01 16 20702317 20702317 A G ACSM1 Splice_Site p.X64_splice 0.14 TCGA-AA-3984-01 16 21011658 21011658 G A DNAH3 Silent p.F2103F 0.20 TCGA-AA-3984-01 16 21147736 21147736 C T DNAH3 Silent p.T265T 0.08 TCGA-AA-3984-01 16 21611091 21611091 G A METTL9 Missense_Mutation p.A13T 0.53 tolerated_low_confidence(0.08) benign(0.051) TCGA-AA-3984-01 16 21624076 21624076 G A METTL9 Silent p.S92S 0.29 TCGA-AA-3984-01 16 21809146 21809146 C T RP11-645C24.5 5'Flank 0.21 TCGA-AA-3984-01 16 22142527 22142527 T C VWA3A Missense_Mutation p.F552L 0.27 deleterious(0) probably_damaging(0.926) TCGA-AA-3984-01 16 22825981 22825981 C T HS3ST2 Missense_Mutation p.A17V 0.21 tolerated_low_confidence(0.4) benign(0.011) TCGA-AA-3984-01 16 2287281 2287281 A G DNASE1L2 Missense_Mutation p.E99G 0.40 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 16 23113703 23113703 C T USP31 Missense_Mutation p.D391N 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 16 23391449 23391449 G T SCNN1B Nonsense_Mutation p.E501* 0.32 TCGA-AA-3984-01 16 23456399 23456399 G A COG7 Silent p.S135S 0.29 TCGA-AA-3984-01 16 23478889 23478889 G T GGA2 3'UTR 0.34 TCGA-AA-3984-01 16 23503028 23503028 G A GGA2 Nonsense_Mutation p.R149* 0.23 TCGA-AA-3984-01 16 23692347 23692347 C T PLK1 Silent p.F230F 0.08 TCGA-AA-3984-01 16 23707271 23707271 A C ERN2 Missense_Mutation p.I566M 0.26 deleterious(0.03) probably_damaging(0.991) TCGA-AA-3984-01 16 23718387 23718387 G A ERN2 Missense_Mutation p.T155I 0.08 deleterious(0) probably_damaging(0.968) TCGA-AA-3984-01 16 24105602 24105602 G A PRKCB Missense_Mutation p.A269T 0.31 tolerated(0.52) benign(0.005) TCGA-AA-3984-01 16 24226095 24226095 C A PRKCB Silent p.S660S 0.27 TCGA-AA-3984-01 16 2522183 2522183 C T NTN3 Silent p.L161L 0.30 TCGA-AA-3984-01 16 25268470 25268470 T C ZKSCAN2 5'UTR 0.25 TCGA-AA-3984-01 16 2549914 2549914 G T TBC1D24 Nonsense_Mutation p.E429* 0.27 TCGA-AA-3984-01 16 27751992 27751992 G A KIAA0556 Missense_Mutation p.D792N 0.22 tolerated(0.32) benign(0.025) TCGA-AA-3984-01 16 27772846 27772846 C A KIAA0556 Silent p.I1248I 0.19 TCGA-AA-3984-01 16 27895937 27895937 G T GSG1L Silent p.V140V 0.28 TCGA-AA-3984-01 16 28187242 28187242 C T XPO6 Missense_Mutation p.D128N 0.09 tolerated(0.05) possibly_damaging(0.544) TCGA-AA-3984-01 16 28495334 28495334 C T CLN3 Silent p.S261S 0.13 TCGA-AA-3984-01 16 2868786 2868786 G A PRSS21 Silent p.S122S 0.23 TCGA-AA-3984-01 16 28841994 28841994 C T ATXN2L Nonsense_Mutation p.R365* 0.25 TCGA-AA-3984-01 16 29096042 29096042 T G RRN3P2 RNA 0.28 TCGA-AA-3984-01 16 2949197 2949197 C T FLYWCH2 3'UTR 0.28 TCGA-AA-3984-01 16 2983573 2983573 C T FLYWCH1 Silent p.D412D 0.11 TCGA-AA-3984-01 16 31286941 31286941 T C ITGAM Silent p.D310D 0.09 TCGA-AA-3984-01 16 31371248 31371248 T G ITGAX Missense_Mutation p.L190R 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 16 31390960 31390960 G A ITGAX Missense_Mutation p.R954K 0.15 tolerated(0.16) probably_damaging(0.978) TCGA-AA-3984-01 16 31425861 31425861 A G ITGAD Missense_Mutation p.T696A 0.32 tolerated(0.06) possibly_damaging(0.844) TCGA-AA-3984-01 16 31497104 31497104 G A SLC5A2 Missense_Mutation p.A120T 0.38 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 16 31925922 31925922 A G ZNF267 Missense_Mutation p.K118E 0.08 tolerated(0.29) benign(0) TCGA-AA-3984-01 16 31927105 31927105 A C ZNF267 Missense_Mutation p.K512T 0.14 tolerated(0.23) possibly_damaging(0.451) TCGA-AA-3984-01 16 31927189 31927189 G A ZNF267 Missense_Mutation p.R540K 0.34 tolerated(0.67) benign(0.006) TCGA-AA-3984-01 16 3274189 3274189 T C ZNF200 Silent p.K297K 0.31 TCGA-AA-3984-01 16 3274538 3274538 G A ZNF200 Missense_Mutation p.S181F 0.32 tolerated(0.14) benign(0.007) TCGA-AA-3984-01 16 33647241 33647241 G A RP11-812E19.9 Missense_Mutation p.A120V 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3984-01 16 3406317 3406317 T C OR2C1 Missense_Mutation p.V126A 0.17 deleterious(0) benign(0.242) TCGA-AA-3984-01 16 34739700 34739700 C T RP11-80F22.15 RNA 0.11 TCGA-AA-3984-01 16 3828175 3828175 A C CREBBP Nonsense_Mutation p.Y650* 0.18 TCGA-AA-3984-01 16 3841993 3841993 C T CREBBP Missense_Mutation p.R440Q 0.23 possibly_damaging(0.765) TCGA-AA-3984-01 16 3900435 3900435 C T CREBBP Missense_Mutation p.G221R 0.21 benign(0.436) TCGA-AA-3984-01 16 4165114 4165114 C T ADCY9 Silent p.P110P 0.48 TCGA-AA-3984-01 16 4625842 4625842 T C C16orf96 Missense_Mutation p.V454A 0.24 tolerated(0.14) benign(0.294) TCGA-AA-3984-01 16 4626198 4626198 G A C16orf96 Missense_Mutation p.A573T 0.21 tolerated(0.05) possibly_damaging(0.695) TCGA-AA-3984-01 16 46638337 46638337 T C SHCBP1 Silent p.G242G 0.29 TCGA-AA-3984-01 16 46836877 46836877 C A C16orf87 Missense_Mutation p.R151I 0.20 deleterious(0) benign(0.308) TCGA-AA-3984-01 16 47117618 47117618 A C NETO2 Missense_Mutation p.I364M 0.27 tolerated(0.06) possibly_damaging(0.714) TCGA-AA-3984-01 16 47485380 47485380 A C ITFG1 Missense_Mutation p.F163V 0.26 tolerated(0.17) probably_damaging(0.943) TCGA-AA-3984-01 16 4786556 4786556 C A C16orf71 Missense_Mutation p.S14Y 0.23 tolerated(0.07) probably_damaging(0.991) TCGA-AA-3984-01 16 48209308 48209308 C T ABCC11 Missense_Mutation p.A1187T 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 16 50353864 50353864 G A BRD7 Nonsense_Mutation p.R613* 0.10 TCGA-AA-3984-01 16 50707908 50707908 G A SNX20 Silent p.F120F 0.35 TCGA-AA-3984-01 16 51175799 51175799 C T SALL1 Missense_Mutation p.D112N 0.27 tolerated(0.23) benign(0.011) TCGA-AA-3984-01 16 521368 521368 C T RAB11FIP3 Silent p.F294F 0.33 TCGA-AA-3984-01 16 53308165 53308165 G T CHD9 Nonsense_Mutation p.E1640* 0.11 TCGA-AA-3984-01 16 53653105 53653105 G A RPGRIP1L Missense_Mutation p.R1150W 0.32 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 16 54317595 54317595 G T IRX3 3'UTR 0.26 TCGA-AA-3984-01 16 54319132 54319132 C T IRX3 Missense_Mutation p.D221N 0.20 tolerated(0.33) benign(0.036) TCGA-AA-3984-01 16 55516892 55516892 G T MMP2 Missense_Mutation p.K75N 0.29 deleterious(0.04) probably_damaging(0.964) TCGA-AA-3984-01 16 55562474 55562474 G A LPCAT2 Missense_Mutation p.R166Q 0.07 deleterious(0.01) benign(0.014) TCGA-AA-3984-01 16 55725862 55725862 C T SLC6A2 Silent p.F272F 0.22 TCGA-AA-3984-01 16 55897258 55897258 A G CES5A Splice_Site p.X299_splice 0.30 TCGA-AA-3984-01 16 56385325 56385325 C T GNAO1 3'Flank 0.16 TCGA-AA-3984-01 16 56518695 56518695 C T BBS2 Missense_Mutation p.R715Q 0.29 tolerated(0.27) benign(0.058) TCGA-AA-3984-01 16 56539946 56539946 C T BBS2 Silent p.S240S 0.12 TCGA-AA-3984-01 16 57003557 57003557 G A CETP Missense_Mutation p.D135N 0.13 tolerated(0.11) benign(0.136) TCGA-AA-3984-01 16 57060779 57060779 C G NLRC5 Missense_Mutation p.H642D 0.21 deleterious(0) possibly_damaging(0.616) TCGA-AA-3984-01 16 57110758 57110758 C T NLRC5 Silent p.V1593V 0.19 TCGA-AA-3984-01 16 57116404 57116404 C A NLRC5 Missense_Mutation p.F1855L 0.24 deleterious(0.05) possibly_damaging(0.64) TCGA-AA-3984-01 16 57507649 57507649 C T DOK4 Splice_Site p.X247_splice 0.17 TCGA-AA-3984-01 16 57764958 57764958 G A CCDC135 Missense_Mutation p.R836H 0.27 tolerated(1) benign(0.183) TCGA-AA-3984-01 16 57938672 57938672 G A CNGB1 Missense_Mutation p.T867M 0.23 tolerated(0.06) benign(0.087) TCGA-AA-3984-01 16 57954316 57954316 G T CNGB1 Silent p.T592T 0.26 TCGA-AA-3984-01 16 58612691 58612691 C T CNOT1 Missense_Mutation p.R499H 0.27 deleterious(0.03) probably_damaging(0.977) TCGA-AA-3984-01 16 65005950 65005950 C T CDH11 Missense_Mutation p.A470T 0.07 tolerated(0.2) benign(0.003) TCGA-AA-3984-01 16 65038593 65038593 G T CDH11 Missense_Mutation p.F60L 0.21 tolerated(0.08) probably_damaging(0.97) TCGA-AA-3984-01 16 66921462 66921462 C T PDP2 3'UTR 0.29 TCGA-AA-3984-01 16 66975531 66975531 C T CES2 Silent p.F410F 0.10 TCGA-AA-3984-01 16 67116170 67116170 G A CBFB Missense_Mutation p.E152K 0.26 tolerated(0.07) benign(0.356) TCGA-AA-3984-01 16 67213391 67213391 C T KIAA0895L Silent p.A263A 0.29 TCGA-AA-3984-01 16 67221215 67221215 C T EXOC3L1 Missense_Mutation p.R318H 0.41 tolerated(0.09) benign(0.056) TCGA-AA-3984-01 16 67472931 67472931 C T ATP6V0D1 Silent p.A253A 0.13 TCGA-AA-3984-01 16 67688297 67688297 G A RLTPR Missense_Mutation p.R1095Q 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3984-01 16 67688396 67688396 G A RLTPR Missense_Mutation p.R1128Q 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3984-01 16 67905026 67905026 G A NUTF2 3'UTR 0.38 TCGA-AA-3984-01 16 67961323 67961323 G A PSKH1 Silent p.R351R 0.23 TCGA-AA-3984-01 16 68293280 68293280 C T PLA2G15 Missense_Mutation p.A320V 0.30 tolerated(0.07) benign(0.033) TCGA-AA-3984-01 16 68597679 68597679 G A ZFP90 Missense_Mutation p.R330Q 0.39 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 16 68894133 68894133 C T TANGO6 Silent p.F147F 0.37 TCGA-AA-3984-01 16 69167522 69167522 G A CIRH1A Splice_Site p.X53_splice 0.13 TCGA-AA-3984-01 16 69727274 69727274 G A NFAT5 Silent p.P1182P 0.30 TCGA-AA-3984-01 16 69921977 69921977 G T WWP2 Nonsense_Mutation p.E247* 0.11 TCGA-AA-3984-01 16 70154418 70154418 C T PDPR Missense_Mutation p.S8L 0.09 tolerated_low_confidence(0.07) benign(0.002) TCGA-AA-3984-01 16 70542337 70542337 T C COG4 Missense_Mutation p.N345D 0.27 tolerated(0.29) benign(0.038) TCGA-AA-3984-01 16 70884488 70884488 C A HYDIN Nonsense_Mutation p.E4172* 0.29 TCGA-AA-3984-01 16 70897082 70897082 G A HYDIN Silent p.F3825F 0.12 TCGA-AA-3984-01 16 70908754 70908754 G A HYDIN Silent p.I3542I 0.16 TCGA-AA-3984-01 16 71483711 71483711 C T ZNF23 Missense_Mutation p.D73N 0.33 tolerated(0.4) benign(0.002) TCGA-AA-3984-01 16 71487250 71487250 A G ZNF23 Missense_Mutation p.F13S 0.29 deleterious(0.03) possibly_damaging(0.773) TCGA-AA-3984-01 16 71487784 71487784 C T ZNF23 Intron 0.36 TCGA-AA-3984-01 16 71609879 71609879 C T TAT Missense_Mutation p.A96T 0.35 deleterious(0.04) possibly_damaging(0.618) TCGA-AA-3984-01 16 71682808 71682808 G A PHLPP2 Silent p.F1319F 0.35 TCGA-AA-3984-01 16 71805085 71805085 T G AP1G1 Missense_Mutation p.K180T 0.39 tolerated(0.12) benign(0.005) TCGA-AA-3984-01 16 71889368 71889368 C T ATXN1L 3'UTR 0.31 TCGA-AA-3984-01 16 71890168 71890168 G A ATXN1L 3'UTR 0.15 TCGA-AA-3984-01 16 71955353 71955353 C A IST1 Silent p.V196V 0.11 TCGA-AA-3984-01 16 72110830 72110830 T C HPR Silent p.S299S 0.36 TCGA-AA-3984-01 16 72156815 72156815 C A PMFBP1 Missense_Mutation p.K922N 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 16 72174339 72174339 C T PMFBP1 Missense_Mutation p.R260Q 0.10 tolerated(0.15) probably_damaging(1) TCGA-AA-3984-01 16 72829380 72829380 T G ZFHX3 Missense_Mutation p.T2401P 0.34 benign(0.002) TCGA-AA-3984-01 16 74455229 74455229 C T CLEC18B 5'UTR 0.19 TCGA-AA-3984-01 16 74922086 74922086 A C WDR59 Missense_Mutation p.V776G 0.08 tolerated(0.34) benign(0.002) TCGA-AA-3984-01 16 74955897 74955897 G A WDR59 Silent p.F278F 0.33 TCGA-AA-3984-01 16 75564906 75564906 A C CHST5 5'UTR 0.36 TCGA-AA-3984-01 16 76555105 76555105 G T CNTNAP4 Nonsense_Mutation p.E739* 0.23 TCGA-AA-3984-01 16 77243357 77243357 C T SYCE1L Silent p.S116S 0.09 TCGA-AA-3984-01 16 81051405 81051405 C T CENPN Missense_Mutation p.S107L 0.25 tolerated(0.06) benign(0.077) TCGA-AA-3984-01 16 81187916 81187916 C A PKD1L2 RNA 0.21 TCGA-AA-3984-01 16 81219283 81219283 C T PKD1L2 5'Flank 0.29 TCGA-AA-3984-01 16 83520244 83520244 C T CDH13 Missense_Mutation p.A362V 0.24 deleterious(0.01) benign(0.003) TCGA-AA-3984-01 16 84135308 84135308 C A MBTPS1 Missense_Mutation p.K27N 0.09 tolerated_low_confidence(0.58) benign(0) TCGA-AA-3984-01 16 84205903 84205903 C T DNAAF1 Silent p.F522F 0.35 TCGA-AA-3984-01 16 84488475 84488475 G A ATP2C2 Missense_Mutation p.D678N 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 16 84914143 84914143 G A CRISPLD2 Missense_Mutation p.E420K 0.13 tolerated(0.21) possibly_damaging(0.597) TCGA-AA-3984-01 16 85010004 85010004 C T ZDHHC7 Missense_Mutation p.R328Q 0.31 tolerated(0.27) benign(0.012) TCGA-AA-3984-01 16 85015570 85015570 C A ZDHHC7 Nonsense_Mutation p.E153* 0.09 TCGA-AA-3984-01 16 85132763 85132763 G T FAM92B 3'UTR 0.17 TCGA-AA-3984-01 16 85141455 85141455 C A FAM92B Missense_Mutation p.M141I 0.29 tolerated(0.51) benign(0.01) TCGA-AA-3984-01 16 855512 855512 G A PRR25 Missense_Mutation p.G24S 0.22 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-AA-3984-01 16 87432450 87432450 C T MAP1LC3B Nonsense_Mutation p.R24* 0.09 TCGA-AA-3984-01 16 88008737 88008737 G A BANP Missense_Mutation p.D6N 0.09 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-AA-3984-01 16 88503736 88503736 G A ZNF469 Silent p.A3258A 0.34 TCGA-AA-3984-01 16 88505777 88505777 T A ZNF469 3'UTR 0.28 TCGA-AA-3984-01 16 8862715 8862715 A G ABAT Missense_Mutation p.H234R 0.33 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 16 88666313 88666313 C T ZC3H18 Nonsense_Mutation p.R349* 0.35 TCGA-AA-3984-01 16 88789091 88789091 C T PIEZO1 Missense_Mutation p.E1559K 0.17 tolerated(0.1) benign(0.037) TCGA-AA-3984-01 16 88873001 88873001 G A CDT1 Silent p.A347A 0.11 TCGA-AA-3984-01 16 89293416 89293416 T C ZNF778 Silent p.L212L 0.28 TCGA-AA-3984-01 16 89350432 89350432 G A ANKRD11 Missense_Mutation p.R840W 0.27 probably_damaging(0.997) TCGA-AA-3984-01 16 89351159 89351159 C T ANKRD11 Silent p.E597E 0.30 TCGA-AA-3984-01 16 89579362 89579362 C T SPG7 Missense_Mutation p.T98I 0.29 tolerated(0.12) benign(0.003) TCGA-AA-3984-01 16 89619414 89619414 G A SPG7 Missense_Mutation p.A603T 0.18 deleterious(0.03) benign(0.365) TCGA-AA-3984-01 16 89799738 89799738 G T ZNF276 Nonsense_Mutation p.E400* 0.21 TCGA-AA-3984-01 16 8997212 8997212 G A USP7 Silent p.Y584Y 0.20 TCGA-AA-3984-01 16 8998399 8998399 C T USP7 Missense_Mutation p.D533N 0.27 tolerated(0.13) benign(0.094) TCGA-AA-3984-01 16 90094055 90094055 G T GAS8 Missense_Mutation p.K5N 0.08 tolerated(0.07) benign(0.04) TCGA-AA-3984-01 17 10214472 10214472 T G MYH13 Missense_Mutation p.K1535T 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 17 10216011 10216011 G A MYH13 Silent p.C1415C 0.25 TCGA-AA-3984-01 17 10222461 10222461 C T MYH13 Silent p.A1128A 0.36 TCGA-AA-3984-01 17 10296504 10296504 C A MYH8 Missense_Mutation p.K1730N 0.26 deleterious(0) possibly_damaging(0.861) TCGA-AA-3984-01 17 10304474 10304474 C T MYH8 Missense_Mutation p.R1048Q 0.30 deleterious(0.01) possibly_damaging(0.751) TCGA-AA-3984-01 17 10351344 10351344 C A MYH4 Nonsense_Mutation p.E1586* 0.30 TCGA-AA-3984-01 17 10351366 10351366 T G MYH4 Silent p.R1578R 0.29 TCGA-AA-3984-01 17 10357057 10357057 T G MYH4 Missense_Mutation p.K946T 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 17 10399748 10399748 C T MYH1 Missense_Mutation p.R1592K 0.10 tolerated(0.21) possibly_damaging(0.863) TCGA-AA-3984-01 17 10400674 10400674 C A MYH1 Missense_Mutation p.K1487N 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 17 10536097 10536097 G T MYH3 Missense_Mutation p.A1551D 0.28 deleterious(0.01) benign(0.038) TCGA-AA-3984-01 17 10541230 10541230 C T MYH3 Missense_Mutation p.R1251Q 0.36 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 17 10542942 10542942 C A MYH3 Missense_Mutation p.D954Y 0.10 deleterious(0) possibly_damaging(0.894) TCGA-AA-3984-01 17 10608607 10608607 A G ADPRM Missense_Mutation p.T122A 0.08 tolerated(0.51) benign(0.005) TCGA-AA-3984-01 17 11568222 11568222 T G DNAH9 Missense_Mutation p.L890V 0.14 benign(0.004) TCGA-AA-3984-01 17 11738129 11738129 C T DNAH9 Nonsense_Mutation p.Q3141* 0.26 TCGA-AA-3984-01 17 12639564 12639564 C T MYOCD Nonsense_Mutation p.R168* 0.22 TCGA-AA-3984-01 17 12649281 12649281 G A MYOCD Silent p.T339T 0.31 TCGA-AA-3984-01 17 12666581 12666581 T C MYOCD Missense_Mutation p.S861P 0.20 tolerated(0.06) benign(0.041) TCGA-AA-3984-01 17 12893374 12893374 G A ARHGAP44 Silent p.S781S 0.34 TCGA-AA-3984-01 17 13503910 13503910 G A HS3ST3A1 Silent p.R179R 0.55 TCGA-AA-3984-01 17 14248946 14248946 G A HS3ST3B1 Missense_Mutation p.D386N 0.27 tolerated(0.24) benign(0.01) TCGA-AA-3984-01 17 15207180 15207180 C T TEKT3 3'UTR 0.35 TCGA-AA-3984-01 17 15234876 15234876 C T TEKT3 Silent p.T9T 0.32 TCGA-AA-3984-01 17 15522450 15522450 G A CDRT1 Missense_Mutation p.A126V 0.10 tolerated(0.1) benign(0.002) TCGA-AA-3984-01 17 15522619 15522619 A G CDRT1 Silent p.L70L 0.27 TCGA-AA-3984-01 17 15619817 15619817 G A ZNF286A Missense_Mutation p.R260Q 0.26 tolerated(0.73) benign(0.061) TCGA-AA-3984-01 17 15938213 15938213 T G NCOR1 Missense_Mutation p.K2334T 0.11 probably_damaging(0.996) TCGA-AA-3984-01 17 16024540 16024540 C A NCOR1 Nonsense_Mutation p.E560* 0.24 TCGA-AA-3984-01 17 16692380 16692380 C T CCDC144A Intron 0.32 TCGA-AA-3984-01 17 17394791 17394791 C T MED9 Silent p.F141F 0.21 TCGA-AA-3984-01 17 17399430 17399430 C A RASD1 Missense_Mutation p.K22N 0.10 deleterious(0.01) possibly_damaging(0.564) TCGA-AA-3984-01 17 17907769 17907769 G A LRRC48 Silent p.A364A 0.37 TCGA-AA-3984-01 17 18220393 18220393 G A SMCR8 Silent p.E430E 0.08 TCGA-AA-3984-01 17 18286646 18286646 G A EVPLL Missense_Mutation p.G245D 0.24 deleterious(0) probably_damaging(0.947) TCGA-AA-3984-01 17 18429952 18429952 G A FAM106A Missense_Mutation p.R56C 0.29 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-AA-3984-01 17 18565807 18565807 G A ZNF286B Nonsense_Mutation p.R338* 0.23 TCGA-AA-3984-01 17 18566112 18566112 C A ZNF286B Missense_Mutation p.R236I 0.06 deleterious(0) benign(0.412) TCGA-AA-3984-01 17 18654331 18654331 C T FBXW10 Missense_Mutation p.R363C 0.09 tolerated(0.05) benign(0.021) TCGA-AA-3984-01 17 19575079 19575079 C T ALDH3A2 Missense_Mutation p.T418I 0.27 deleterious(0.01) benign(0.188) TCGA-AA-3984-01 17 19579001 19579001 C T ALDH3A2 3'UTR 0.20 TCGA-AA-3984-01 17 1962418 1962418 C T HIC1 3'UTR 0.34 TCGA-AA-3984-01 17 1962950 1962950 G A HIC1 3'UTR 0.32 TCGA-AA-3984-01 17 19645463 19645463 G A ALDH3A1 Silent p.F181F 0.17 TCGA-AA-3984-01 17 19645898 19645898 G A ALDH3A1 Missense_Mutation p.A147V 0.33 deleterious(0.02) possibly_damaging(0.483) TCGA-AA-3984-01 17 20108318 20108318 T C SPECC1 Missense_Mutation p.V319A 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3984-01 17 20224876 20224876 G A AC004702.2 Intron 0.10 TCGA-AA-3984-01 17 21203896 21203896 G T MAP2K3 Nonsense_Mutation p.E69* 0.20 TCGA-AA-3984-01 17 21319420 21319420 G A KCNJ12 Missense_Mutation p.D256N 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-AA-3984-01 17 21731605 21731605 G C UBBP4 Missense_Mutation p.G227A 0.28 deleterious(0.02) possibly_damaging(0.621) TCGA-AA-3984-01 17 21731618 21731618 C T UBBP4 3'UTR 0.24 TCGA-AA-3984-01 17 2323297 2323297 A G METTL16 Silent p.R552R 0.19 TCGA-AA-3984-01 17 2323692 2323692 C A METTL16 Nonsense_Mutation p.E421* 0.32 TCGA-AA-3984-01 17 263193 263193 C T C17orf97 Missense_Mutation p.R187C 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3984-01 17 26955433 26955433 T G KIAA0100 Missense_Mutation p.N1482H 0.13 deleterious(0) possibly_damaging(0.792) TCGA-AA-3984-01 17 27493937 27493937 C A MYO18A Missense_Mutation p.D8Y 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3984-01 17 28419039 28419039 C A EFCAB5 Missense_Mutation p.S1363Y 0.31 tolerated(0.96) benign(0.005) TCGA-AA-3984-01 17 28511765 28511765 C T NSRP1 Silent p.F250F 0.08 TCGA-AA-3984-01 17 28750560 28750560 G A CPD Missense_Mutation p.G565E 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 17 28819768 28819768 G A GOSR1 Missense_Mutation p.R171Q 0.24 tolerated(0.06) possibly_damaging(0.532) TCGA-AA-3984-01 17 29162874 29162874 A C ATAD5 Missense_Mutation p.K592T 0.31 deleterious(0) possibly_damaging(0.649) TCGA-AA-3984-01 17 29231425 29231425 C A TEFM Nonsense_Mutation p.E52* 0.30 TCGA-AA-3984-01 17 29253897 29253897 T C ADAP2 Missense_Mutation p.V93A 0.32 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 17 29622114 29622114 C A OMG Missense_Mutation p.K412N 0.36 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3984-01 17 29622794 29622794 T C OMG Missense_Mutation p.T186A 0.31 tolerated(0.05) probably_damaging(0.983) TCGA-AA-3984-01 17 29683492 29683492 T G NF1 Missense_Mutation p.F2544V 0.30 deleterious_low_confidence(0.03) probably_damaging(0.942) TCGA-AA-3984-01 17 29850609 29850609 G A RAB11FIP4 Missense_Mutation p.D337N 0.09 tolerated(0.09) benign(0.406) TCGA-AA-3984-01 17 29850994 29850994 G T RAB11FIP4 Missense_Mutation p.E371D 0.08 tolerated(0.05) benign(0.118) TCGA-AA-3984-01 17 30200436 30200436 C T UTP6 Missense_Mutation p.R486Q 0.34 tolerated(0.18) benign(0.038) TCGA-AA-3984-01 17 30267332 30267332 G A SUZ12 Missense_Mutation p.R101Q 0.09 deleterious(0) benign(0.427) TCGA-AA-3984-01 17 30632384 30632384 A G RHBDL3 Missense_Mutation p.D269G 0.36 deleterious(0.02) possibly_damaging(0.819) TCGA-AA-3984-01 17 30668230 30668230 C A C17orf75 Missense_Mutation p.D72Y 0.10 deleterious(0) probably_damaging(0.968) TCGA-AA-3984-01 17 30685618 30685618 G T ZNF207 Missense_Mutation p.D89Y 0.08 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 17 3119771 3119771 T C OR1A1 Missense_Mutation p.F286S 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 17 31344629 31344629 A C ASIC2 Missense_Mutation p.I505M 0.18 tolerated(0.06) possibly_damaging(0.839) TCGA-AA-3984-01 17 3195189 3195189 G A OR3A1 Nonsense_Mutation p.R230* 0.32 TCGA-AA-3984-01 17 3195465 3195465 G A OR3A1 Missense_Mutation p.R138C 0.30 tolerated(0.18) benign(0.017) TCGA-AA-3984-01 17 32483139 32483139 C T ASIC2 Missense_Mutation p.R138Q 0.29 tolerated(0.7) benign(0.001) TCGA-AA-3984-01 17 32683553 32683553 T C CCL13 Missense_Mutation p.V3A 0.26 deleterious(0.04) benign(0.11) TCGA-AA-3984-01 17 33521101 33521101 G A SLC35G3 Nonsense_Mutation p.R76* 0.20 TCGA-AA-3984-01 17 33680504 33680504 C A SLFN11 Missense_Mutation p.K591N 0.24 deleterious(0.04) benign(0.223) TCGA-AA-3984-01 17 33802020 33802020 C T SLFN12L Silent p.E563E 0.11 TCGA-AA-3984-01 17 33849409 33849409 C T SLFN12L 5'UTR 0.11 TCGA-AA-3984-01 17 33875981 33875981 G A SLFN14 Silent p.G672G 0.10 TCGA-AA-3984-01 17 33885056 33885056 T G SLFN14 Missense_Mutation p.E9A 0.08 deleterious(0) benign(0.092) TCGA-AA-3984-01 17 34304626 34304626 T C CCL16 Silent p.Q113Q 0.08 TCGA-AA-3984-01 17 34304635 34304635 C A CCL16 Missense_Mutation p.K110N 0.10 deleterious(0.04) benign(0.145) TCGA-AA-3984-01 17 34340260 34340260 G A CCL23 Missense_Mutation p.R131W 0.22 deleterious(0.04) benign(0.035) TCGA-AA-3984-01 17 34398330 34398330 C T CCL18 Missense_Mutation p.R67W 0.19 deleterious(0) benign(0.223) TCGA-AA-3984-01 17 34640787 34640787 G A CCL4L2 Silent p.A40A 0.19 TCGA-AA-3984-01 17 34964687 34964687 C A MRM1 Missense_Mutation p.L300I 0.28 deleterious(0.03) benign(0.306) TCGA-AA-3984-01 17 35545329 35545329 C T ACACA Missense_Mutation p.R1555H 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 17 35640230 35640230 C T ACACA Missense_Mutation p.R183Q 0.31 tolerated(0.07) probably_damaging(0.988) TCGA-AA-3984-01 17 35734872 35734872 C T C17orf78 Silent p.D38D 0.10 TCGA-AA-3984-01 17 35872618 35872618 C A DUSP14 Missense_Mutation p.P82T 0.12 deleterious(0) possibly_damaging(0.821) TCGA-AA-3984-01 17 35878950 35878950 G A SYNRG 3'UTR 0.23 TCGA-AA-3984-01 17 3628554 3628554 A T GSG2 Missense_Mutation p.Y442F 0.31 tolerated(0.06) possibly_damaging(0.559) TCGA-AA-3984-01 17 3629371 3629371 C T GSG2 Silent p.D714D 0.28 TCGA-AA-3984-01 17 36482489 36482489 C T GPR179 Silent p.R2321R 0.36 TCGA-AA-3984-01 17 36485221 36485221 T C GPR179 Missense_Mutation p.K1411E 0.08 deleterious(0.01) possibly_damaging(0.773) TCGA-AA-3984-01 17 3651268 3651268 C T ITGAE Silent p.V701V 0.21 TCGA-AA-3984-01 17 3654948 3654948 G A ITGAE Missense_Mutation p.S630L 0.27 deleterious(0.01) possibly_damaging(0.856) TCGA-AA-3984-01 17 36619589 36619589 C T ARHGAP23 Missense_Mutation p.S150F 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 17 36895359 36895359 C T PCGF2 Missense_Mutation p.R93Q 0.16 deleterious(0.01) possibly_damaging(0.635) TCGA-AA-3984-01 17 37006478 37006478 A C RPL23 Intron 0.36 TCGA-AA-3984-01 17 3724626 3724626 C T C17orf85 Missense_Mutation p.R306H 0.13 deleterious(0.02) probably_damaging(0.984) TCGA-AA-3984-01 17 37566417 37566417 T G MED1 Missense_Mutation p.K686T 0.32 tolerated_low_confidence(0.09) benign(0.028) TCGA-AA-3984-01 17 37650845 37650845 C T CDK12 Missense_Mutation p.R773C 0.07 probably_damaging(0.999) TCGA-AA-3984-01 17 37667784 37667784 G A CDK12 Missense_Mutation p.R890H 0.28 probably_damaging(0.999) TCGA-AA-3984-01 17 37829804 37829804 G A PGAP3 Silent p.F219F 0.20 TCGA-AA-3984-01 17 37885842 37885842 C T MIEN1 Missense_Mutation p.R94Q 0.28 tolerated(0.41) possibly_damaging(0.71) TCGA-AA-3984-01 17 38062156 38062156 C T GSDMB Missense_Mutation p.G324E 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-AA-3984-01 17 38068637 38068637 T G GSDMB Missense_Mutation p.K117Q 0.30 tolerated(0.44) benign(0.045) TCGA-AA-3984-01 17 38127809 38127809 C T GSDMA Silent p.I197I 0.35 TCGA-AA-3984-01 17 38245659 38245659 G A THRA Intron 0.15 TCGA-AA-3984-01 17 38340595 38340595 C A RAPGEFL1 Silent p.I37I 0.22 TCGA-AA-3984-01 17 38548934 38548934 C A TOP2A Missense_Mutation p.K1289N 0.23 deleterious(0.05) benign(0.005) TCGA-AA-3984-01 17 38855908 38855908 G A KRT24 Silent p.S383S 0.10 TCGA-AA-3984-01 17 38906772 38906772 G A KRT25 Silent p.I345I 0.13 TCGA-AA-3984-01 17 39155774 39155774 C A KRTAP3-2 3'UTR 0.24 TCGA-AA-3984-01 17 39190474 39190474 G T KRTAP1-3 3'UTR 0.20 TCGA-AA-3984-01 17 39240909 39240909 G A KRTAP4-7 Missense_Mutation p.A151T 0.25 tolerated(0.17) unknown(0) TCGA-AA-3984-01 17 39253552 39253552 C T KRTAP4-8 3'UTR 0.25 TCGA-AA-3984-01 17 39305925 39305925 C A KRTAP4-5 Missense_Mutation p.R32M 0.28 unknown(0) TCGA-AA-3984-01 17 39537408 39537408 C T KRT34 Missense_Mutation p.R205H 0.22 tolerated(0.12) probably_damaging(1) TCGA-AA-3984-01 17 39551785 39551785 C T KRT31 Missense_Mutation p.E227K 0.24 tolerated(0.06) benign(0.076) TCGA-AA-3984-01 17 39580691 39580691 C T KRT37 Missense_Mutation p.D29N 0.24 tolerated(0.21) benign(0.256) TCGA-AA-3984-01 17 39620386 39620386 C A KRT32 Missense_Mutation p.D314Y 0.09 deleterious(0) probably_damaging(0.977) TCGA-AA-3984-01 17 39659576 39659576 T G KRT13 Missense_Mutation p.N233T 0.21 tolerated(0.21) benign(0.05) TCGA-AA-3984-01 17 39743015 39743015 G A KRT14 Silent p.I24I 0.33 TCGA-AA-3984-01 17 39767948 39767948 G A KRT16 Missense_Mutation p.A186V 0.30 deleterious(0.02) possibly_damaging(0.46) TCGA-AA-3984-01 17 40021429 40021429 G A KLHL11 Silent p.G65G 0.31 TCGA-AA-3984-01 17 4009011 4009011 T C ZZEF1 Missense_Mutation p.D457G 0.36 deleterious(0) probably_damaging(0.94) TCGA-AA-3984-01 17 40128678 40128678 G A DNAJC7 3'UTR 0.25 TCGA-AA-3984-01 17 40843526 40843526 G A CNTNAP1 Missense_Mutation p.D781N 0.24 deleterious(0.02) probably_damaging(0.986) TCGA-AA-3984-01 17 40985857 40985857 A C PSME3 Intron 0.38 TCGA-AA-3984-01 17 41001244 41001244 G T AOC2 Missense_Mutation p.S577I 0.12 tolerated(0.07) benign(0.013) TCGA-AA-3984-01 17 41226515 41226515 G T BRCA1 Nonsense_Mutation p.S1524* 0.28 TCGA-AA-3984-01 17 41276095 41276095 G A BRCA1 Missense_Mutation p.R7C 0.11 deleterious(0) possibly_damaging(0.528) TCGA-AA-3984-01 17 42745468 42745468 C A C17orf104 Missense_Mutation p.S730Y 0.10 deleterious(0.02) probably_damaging(0.958) TCGA-AA-3984-01 17 42747025 42747025 C T C17orf104 Intron 0.12 TCGA-AA-3984-01 17 42818751 42818751 C A DBF4B Missense_Mutation p.S254Y 0.21 tolerated(0.16) benign(0.282) TCGA-AA-3984-01 17 42982555 42982555 C A FAM187A 3'UTR 0.19 TCGA-AA-3984-01 17 43227752 43227752 G T HEXIM1 3'UTR 0.26 TCGA-AA-3984-01 17 43228138 43228138 C A HEXIM1 3'UTR 0.28 TCGA-AA-3984-01 17 43922782 43922782 C T SPPL2C Silent p.V170V 0.31 TCGA-AA-3984-01 17 45249317 45249317 A G CDC27 Missense_Mutation p.Y73H 0.45 tolerated(0.07) benign(0.077) TCGA-AA-3984-01 17 45369576 45369576 C T ITGB3 Silent p.P444P 0.11 TCGA-AA-3984-01 17 45380177 45380177 A C ITGB3 Missense_Mutation p.K702T 0.25 deleterious(0.04) benign(0.145) TCGA-AA-3984-01 17 45452161 45452161 C A EFCAB13 Missense_Mutation p.H401N 0.21 deleterious(0.05) possibly_damaging(0.579) TCGA-AA-3984-01 17 45662870 45662870 T C NPEPPS Missense_Mutation p.V218A 0.20 deleterious(0.02) benign(0.363) TCGA-AA-3984-01 17 45911801 45911801 C T LRRC46 Missense_Mutation p.L43F 0.25 deleterious(0) probably_damaging(0.951) TCGA-AA-3984-01 17 46608168 46608168 T C HOXB1 Silent p.P33P 0.24 TCGA-AA-3984-01 17 46882314 46882314 T C TTLL6 Missense_Mutation p.E48G 0.32 deleterious_low_confidence(0) possibly_damaging(0.638) TCGA-AA-3984-01 17 4689539 4689539 C T VMO1 Missense_Mutation p.E37K 0.15 tolerated(0.42) benign(0.131) TCGA-AA-3984-01 17 47301854 47301854 G A PHOSPHO1 Silent p.R211R 0.20 TCGA-AA-3984-01 17 47395032 47395032 A G ZNF652 Missense_Mutation p.V19A 0.11 tolerated(0.46) benign(0.002) TCGA-AA-3984-01 17 47656483 47656483 G A NXPH3 Missense_Mutation p.D194N 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3984-01 17 47656573 47656573 G A NXPH3 Missense_Mutation p.A224T 0.47 tolerated(0.4) benign(0.075) TCGA-AA-3984-01 17 47778714 47778714 G T SLC35B1 3'UTR 0.35 TCGA-AA-3984-01 17 47875720 47875720 G A KAT7 Missense_Mutation p.R127Q 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.463) TCGA-AA-3984-01 17 48051091 48051091 C T DLX4 Silent p.R169R 0.08 TCGA-AA-3984-01 17 48148229 48148229 G A ITGA3 Missense_Mutation p.R229H 0.31 tolerated(0.08) possibly_damaging(0.889) TCGA-AA-3984-01 17 48158724 48158724 C T ITGA3 Silent p.F957F 0.24 TCGA-AA-3984-01 17 48274573 48274573 G A COL1A1 Missense_Mutation p.R240C 0.07 unknown(0) TCGA-AA-3984-01 17 4837460 4837460 C T GP1BA Missense_Mutation p.L521F 0.24 tolerated(0.08) unknown(0) TCGA-AA-3984-01 17 48503634 48503634 C T ACSF2 Silent p.Y4Y 0.29 TCGA-AA-3984-01 17 48545966 48545966 G A CHAD Missense_Mutation p.S70L 0.25 deleterious(0) benign(0.081) TCGA-AA-3984-01 17 48602374 48602374 G T MYCBPAP Missense_Mutation p.R634I 0.15 deleterious(0.02) possibly_damaging(0.865) TCGA-AA-3984-01 17 4999257 4999257 G A ZFP3 3'UTR 0.24 TCGA-AA-3984-01 17 5058812 5058812 G T USP6 Missense_Mutation p.K913N 0.29 tolerated_low_confidence(0.44) probably_damaging(0.988) TCGA-AA-3984-01 17 5073954 5073954 C A USP6 Missense_Mutation p.A1233D 0.32 tolerated_low_confidence(0.11) possibly_damaging(0.643) TCGA-AA-3984-01 17 5087112 5087112 C A ZNF594 Missense_Mutation p.R147I 0.28 deleterious(0.04) benign(0.002) TCGA-AA-3984-01 17 5114227 5114227 G A SCIMP Missense_Mutation p.P103S 0.09 tolerated(0.16) benign(0.005) TCGA-AA-3984-01 17 51901730 51901730 G A KIF2B Missense_Mutation p.V446I 0.28 tolerated(1) benign(0.135) TCGA-AA-3984-01 17 54230881 54230881 C A ANKFN1 Missense_Mutation p.S4Y 0.21 deleterious_low_confidence(0.01) benign(0.047) TCGA-AA-3984-01 17 55027343 55027343 C T COIL Silent p.G420G 0.33 TCGA-AA-3984-01 17 55478784 55478784 G A MSI2 Silent p.A119A 0.08 TCGA-AA-3984-01 17 56327807 56327807 A G LPO Missense_Mutation p.Y202C 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 17 56357221 56357221 G A MPO Nonsense_Mutation p.R135* 0.25 TCGA-AA-3984-01 17 56357333 56357333 T G MPO Missense_Mutation p.E97D 0.29 tolerated(1) benign(0.005) TCGA-AA-3984-01 17 56619323 56619323 G T C17orf47 Silent p.V522V 0.26 TCGA-AA-3984-01 17 56676339 56676339 G A TEX14 Silent p.G795G 0.09 TCGA-AA-3984-01 17 56676432 56676432 G A TEX14 Silent p.V764V 0.22 TCGA-AA-3984-01 17 57057918 57057918 G T PPM1E Missense_Mutation p.K598N 0.18 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-AA-3984-01 17 57648001 57648001 C T DHX40 Missense_Mutation p.R135C 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 17 57812753 57812753 T G VMP1 Missense_Mutation p.I44S 0.11 deleterious(0) probably_damaging(0.921) TCGA-AA-3984-01 17 58073606 58073606 C T RP11-178C3.2 RNA 0.25 TCGA-AA-3984-01 17 58284447 58284447 A C USP32 Missense_Mutation p.F991C 0.31 tolerated(0.17) possibly_damaging(0.905) TCGA-AA-3984-01 17 58506843 58506843 C T C17orf64 Silent p.L184L 0.31 TCGA-AA-3984-01 17 59161843 59161843 C T BCAS3 Silent p.R796R 0.15 TCGA-AA-3984-01 17 59668192 59668192 G A NACA2 Missense_Mutation p.S117L 0.08 tolerated(0.06) probably_damaging(0.979) TCGA-AA-3984-01 17 59761194 59761194 T A BRIP1 Missense_Mutation p.E1071D 0.12 tolerated_low_confidence(0.13) possibly_damaging(0.779) TCGA-AA-3984-01 17 59878696 59878696 T C BRIP1 Missense_Mutation p.Y353C 0.19 deleterious(0) probably_damaging(0.978) TCGA-AA-3984-01 17 60088030 60088030 C A MED13 Missense_Mutation p.K616N 0.08 deleterious(0.05) benign(0.432) TCGA-AA-3984-01 17 60483854 60483854 A C EFCAB3 Missense_Mutation p.K220Q 0.39 deleterious(0.04) probably_damaging(0.979) TCGA-AA-3984-01 17 60655876 60655876 A C TLK2 Missense_Mutation p.E409D 0.29 tolerated(0.08) benign(0.399) TCGA-AA-3984-01 17 61176579 61176579 C T TANC2 Silent p.Y61Y 0.14 TCGA-AA-3984-01 17 61497366 61497366 C T TANC2 Silent p.F1341F 0.26 TCGA-AA-3984-01 17 61498375 61498375 C A TANC2 Missense_Mutation p.Q1678K 0.12 deleterious_low_confidence(0.03) benign(0.107) TCGA-AA-3984-01 17 61499255 61499255 C T TANC2 Missense_Mutation p.S1971F 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.556) TCGA-AA-3984-01 17 61712152 61712152 G T MAP3K3 Missense_Mutation p.K70N 0.26 tolerated_low_confidence(0.28) benign(0.002) TCGA-AA-3984-01 17 61886222 61886222 C T DDX42 Nonsense_Mutation p.R356* 0.07 TCGA-AA-3984-01 17 61895457 61895457 G A DDX42 Missense_Mutation p.R839H 0.44 deleterious_low_confidence(0) benign(0.01) TCGA-AA-3984-01 17 61898986 61898986 G A FTSJ3 Silent p.I538I 0.35 TCGA-AA-3984-01 17 61903663 61903663 G A FTSJ3 Silent p.L59L 0.07 TCGA-AA-3984-01 17 61958041 61958041 G A GH2 Nonsense_Mutation p.Q183* 0.17 TCGA-AA-3984-01 17 61973945 61973945 C T CSH1 5'UTR 0.23 TCGA-AA-3984-01 17 61987816 61987816 C T CSHL1 Silent p.P90P 0.09 TCGA-AA-3984-01 17 61995470 61995470 C T GH1 Silent p.Q66Q 0.24 TCGA-AA-3984-01 17 61996175 61996175 C T GH1 5'UTR 0.10 TCGA-AA-3984-01 17 62018575 62018575 A G SCN4A Silent p.G1689G 0.11 TCGA-AA-3984-01 17 62082685 62082685 G A ICAM2 Missense_Mutation p.A37V 0.32 tolerated(0.8) benign(0.002) TCGA-AA-3984-01 17 62500377 62500377 C T DDX5 Silent p.P90P 0.08 TCGA-AA-3984-01 17 62522230 62522230 T C CEP95 Missense_Mutation p.F355S 0.23 tolerated(0.23) benign(0.015) TCGA-AA-3984-01 17 62532801 62532801 C T CEP95 Nonsense_Mutation p.R718* 0.11 TCGA-AA-3984-01 17 62850663 62850663 G A LRRC37A3 3'UTR 0.28 TCGA-AA-3984-01 17 62859168 62859168 C T LRRC37A3 Intron 0.50 TCGA-AA-3984-01 17 62893288 62893288 A C LRRC37A3 Missense_Mutation p.L30V 0.08 deleterious(0.01) benign(0.006) TCGA-AA-3984-01 17 6364757 6364757 G T PITPNM3 Missense_Mutation p.S809Y 0.14 deleterious(0) benign(0.232) TCGA-AA-3984-01 17 63848086 63848086 G A CEP112 Missense_Mutation p.R744W 0.27 deleterious(0.03) probably_damaging(1) TCGA-AA-3984-01 17 64173134 64173134 C T CEP112 Silent p.R37R 0.17 TCGA-AA-3984-01 17 64876801 64876801 C A CACNG5 Missense_Mutation p.F137L 0.07 tolerated(0.73) benign(0.101) TCGA-AA-3984-01 17 6531826 6531826 C A KIAA0753 Missense_Mutation p.R110L 0.27 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 17 65341972 65341972 G A PSMD12 Missense_Mutation p.A266V 0.23 tolerated(0.59) benign(0.005) TCGA-AA-3984-01 17 65907574 65907574 A C BPTF Missense_Mutation p.K1192Q 0.10 benign(0.004) TCGA-AA-3984-01 17 65987881 65987881 C T C17orf58 3'UTR 0.24 TCGA-AA-3984-01 17 66247101 66247101 T G AMZ2 Missense_Mutation p.I150M 0.28 deleterious(0.01) possibly_damaging(0.729) TCGA-AA-3984-01 17 66420628 66420628 G T WIPI1 Intron 0.14 TCGA-AA-3984-01 17 66431771 66431771 G A WIPI1 Missense_Mutation p.A204V 0.27 deleterious(0) probably_damaging(0.916) TCGA-AA-3984-01 17 66883204 66883204 C T ABCA8 Missense_Mutation p.R1088H 0.12 tolerated(0.09) benign(0.258) TCGA-AA-3984-01 17 66914190 66914190 G A ABCA8 Missense_Mutation p.A642V 0.10 deleterious(0) probably_damaging(0.965) TCGA-AA-3984-01 17 66978707 66978707 C T ABCA9 Silent p.E1572E 0.08 TCGA-AA-3984-01 17 67039816 67039816 A G ABCA9 Missense_Mutation p.V205A 0.21 deleterious(0.04) benign(0.25) TCGA-AA-3984-01 17 67084332 67084332 C A ABCA6 Missense_Mutation p.R1225I 0.21 tolerated(0.31) benign(0) TCGA-AA-3984-01 17 67087337 67087337 T C ABCA6 Missense_Mutation p.M1159V 0.19 tolerated(0.43) benign(0.082) TCGA-AA-3984-01 17 67099069 67099069 T G ABCA6 Missense_Mutation p.Q927H 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 17 67114039 67114039 C A ABCA6 Missense_Mutation p.G499C 0.29 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 17 67136835 67136835 T G ABCA6 Missense_Mutation p.K4Q 0.33 deleterious(0) possibly_damaging(0.776) TCGA-AA-3984-01 17 67181655 67181655 C A ABCA10 Missense_Mutation p.K820N 0.27 deleterious(0.03) benign(0.026) TCGA-AA-3984-01 17 67184007 67184007 C T ABCA10 Silent p.G715G 0.10 TCGA-AA-3984-01 17 67189970 67189970 C A ABCA10 Missense_Mutation p.K502N 0.20 tolerated(0.12) benign(0.117) TCGA-AA-3984-01 17 68129306 68129306 C T KCNJ16 Nonsense_Mutation p.R360* 0.12 TCGA-AA-3984-01 17 68130169 68130169 G A KCNJ16 3'UTR 0.28 TCGA-AA-3984-01 17 68172224 68172224 C T KCNJ2 Silent p.Y348Y 0.33 TCGA-AA-3984-01 17 6978999 6978999 C A CLEC10A Intron 0.42 TCGA-AA-3984-01 17 70118931 70118931 A G SOX9 Missense_Mutation p.D168G 0.21 deleterious(0) benign(0.341) TCGA-AA-3984-01 17 71165928 71165928 G A SSTR2 Missense_Mutation p.R157Q 0.22 tolerated(0.28) benign(0.12) TCGA-AA-3984-01 17 71193534 71193534 C T COG1 Silent p.A304A 0.30 TCGA-AA-3984-01 17 71203355 71203355 G A COG1 Missense_Mutation p.R922Q 0.32 tolerated(0.06) benign(0.298) TCGA-AA-3984-01 17 71391425 71391425 T C SDK2 Missense_Mutation p.D1154G 0.11 tolerated(0.14) probably_damaging(1) TCGA-AA-3984-01 17 7164155 7164155 T G CLDN7 Missense_Mutation p.I125L 0.18 tolerated(0.53) benign(0.003) TCGA-AA-3984-01 17 7217676 7217676 T C GPS2 Missense_Mutation p.H84R 0.31 deleterious(0) benign(0.402) TCGA-AA-3984-01 17 72256275 72256275 C A TTYH2 Missense_Mutation p.P511H 0.16 deleterious(0) benign(0.423) TCGA-AA-3984-01 17 7228220 7228220 C T NEURL4 Missense_Mutation p.D571N 0.11 deleterious(0) probably_damaging(0.989) TCGA-AA-3984-01 17 72367986 72367986 C T GPR142 Silent p.F212F 0.11 TCGA-AA-3984-01 17 72522107 72522107 G A CD300LB Silent p.C87C 0.27 TCGA-AA-3984-01 17 72584804 72584804 C A CD300LD Missense_Mutation p.K75N 0.10 deleterious(0) possibly_damaging(0.857) TCGA-AA-3984-01 17 72861052 72861052 C A FDXR Missense_Mutation p.R247I 0.32 deleterious(0) benign(0.091) TCGA-AA-3984-01 17 72915685 72915685 C T USH1G Missense_Mutation p.E416K 0.30 deleterious(0.02) benign(0.342) TCGA-AA-3984-01 17 72916105 72916105 A G USH1G Missense_Mutation p.F276L 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-AA-3984-01 17 72945498 72945498 A G OTOP3 Missense_Mutation p.Y593C 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 17 72949737 72949737 T G HID1 Missense_Mutation p.K625T 0.26 tolerated(0.25) benign(0.06) TCGA-AA-3984-01 17 73015849 73015849 A G ICT1 Missense_Mutation p.N93S 0.10 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 17 73237073 73237073 A C GGA3 Missense_Mutation p.L338V 0.30 tolerated(0.28) benign(0.028) TCGA-AA-3984-01 17 73266204 73266204 C T MIF4GD Missense_Mutation p.A25T 0.18 deleterious_low_confidence(0.02) probably_damaging(0.925) TCGA-AA-3984-01 17 73316569 73316569 G A GRB2 Silent p.R178R 0.12 TCGA-AA-3984-01 17 73809210 73809210 C T UNK Missense_Mutation p.P225L 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 17 73969742 73969742 T C ACOX1 Intron 0.37 TCGA-AA-3984-01 17 7400189 7400189 T G POLR2A Missense_Mutation p.L215R 0.41 benign(0.296) TCGA-AA-3984-01 17 74075792 74075792 C T ZACN Nonsense_Mutation p.R78* 0.30 TCGA-AA-3984-01 17 74289113 74289113 T C QRICH2 Silent p.T399T 0.29 TCGA-AA-3984-01 17 74391933 74391933 G T UBE2O Missense_Mutation p.S940Y 0.37 tolerated(1) benign(0.011) TCGA-AA-3984-01 17 74475974 74475974 G A RHBDF2 Missense_Mutation p.A67V 0.31 tolerated_low_confidence(0.47) benign(0.001) TCGA-AA-3984-01 17 74944092 74944092 G A MGAT5B Missense_Mutation p.D711N 0.22 tolerated(0.06) benign(0.063) TCGA-AA-3984-01 17 76045643 76045643 C A TNRC6C Missense_Mutation p.S167Y 0.32 deleterious(0) possibly_damaging(0.771) TCGA-AA-3984-01 17 76047514 76047514 C G TNRC6C Missense_Mutation p.P791A 0.28 tolerated(0.06) benign(0.135) TCGA-AA-3984-01 17 76441685 76441685 G A DNAH17 Silent p.V3749V 0.24 TCGA-AA-3984-01 17 76450649 76450649 G A DNAH17 Missense_Mutation p.R3423W 0.36 probably_damaging(0.999) TCGA-AA-3984-01 17 76496381 76496381 G A DNAH17-AS1 Missense_Mutation p.A105T 0.32 unknown(0) TCGA-AA-3984-01 17 7664164 7664164 G T DNAH2 Missense_Mutation p.E964D 0.28 benign(0.02) TCGA-AA-3984-01 17 76799702 76799702 C T USP36 Missense_Mutation p.A859T 0.08 tolerated_low_confidence(0.58) benign(0.004) TCGA-AA-3984-01 17 76887731 76887731 T G DDC8 Silent p.A285A 0.19 TCGA-AA-3984-01 17 7722542 7722542 G A DNAH2 Missense_Mutation p.A3611T 0.31 probably_damaging(0.995) TCGA-AA-3984-01 17 77768666 77768666 G T CBX8 Missense_Mutation p.P313H 0.22 tolerated(0.23) benign(0) TCGA-AA-3984-01 17 78261649 78261649 G A RNF213 Silent p.G99G 0.17 TCGA-AA-3984-01 17 78410114 78410114 G A ENDOV 3'UTR 0.42 TCGA-AA-3984-01 17 79031742 79031742 C T BAIAP2 Silent p.S64S 0.27 TCGA-AA-3984-01 17 79422366 79422366 C T RP11-1055B8.7 Nonsense_Mutation p.R1507* 0.34 TCGA-AA-3984-01 17 79517845 79517845 G A C17orf70 Silent p.F225F 0.38 TCGA-AA-3984-01 17 79556018 79556018 G A NPLOC4 Silent p.Y411Y 0.09 TCGA-AA-3984-01 17 79668580 79668580 G T HGS Missense_Mutation p.A756S 0.40 tolerated_low_confidence(0.21) probably_damaging(0.956) TCGA-AA-3984-01 17 7979527 7979527 C T ALOX12B Missense_Mutation p.D500N 0.18 deleterious(0) possibly_damaging(0.877) TCGA-AA-3984-01 17 8006655 8006655 C A ALOXE3 Nonsense_Mutation p.E780* 0.10 TCGA-AA-3984-01 17 80789890 80789890 G A ZNF750 Silent p.L147L 0.26 TCGA-AA-3984-01 17 80867170 80867170 C T TBCD Missense_Mutation p.R665C 0.22 deleterious(0.02) possibly_damaging(0.701) TCGA-AA-3984-01 17 80885794 80885794 G A TBCD Missense_Mutation p.A875T 0.41 tolerated(0.05) benign(0.327) TCGA-AA-3984-01 17 8134782 8134782 T A CTC1 Silent p.P827P 0.30 TCGA-AA-3984-01 17 8424439 8424439 G A MYH10 Missense_Mutation p.R708C 0.25 probably_damaging(0.999) TCGA-AA-3984-01 17 8726362 8726362 A C PIK3R6 Missense_Mutation p.I556M 0.29 deleterious(0) possibly_damaging(0.831) TCGA-AA-3984-01 17 8732074 8732074 G A PIK3R6 Missense_Mutation p.R375C 0.34 deleterious(0) probably_damaging(0.975) TCGA-AA-3984-01 17 9804316 9804316 C A RCVRN Missense_Mutation p.K161N 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 17 9837520 9837520 G A GAS7 Missense_Mutation p.A283V 0.13 tolerated(0.44) possibly_damaging(0.845) TCGA-AA-3984-01 18 10671435 10671435 G A PIEZO2 3'Flank 0.30 TCGA-AA-3984-01 18 10671481 10671481 A C PIEZO2 3'Flank 0.09 TCGA-AA-3984-01 18 12325539 12325539 C T TUBB6 Missense_Mutation p.R251C 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3984-01 18 12337411 12337411 G A AFG3L2 Nonsense_Mutation p.R702* 0.27 TCGA-AA-3984-01 18 13049508 13049508 T G CEP192 Missense_Mutation p.S906R 0.30 deleterious(0.03) benign(0.103) TCGA-AA-3984-01 18 13731677 13731677 A G RNMT Missense_Mutation p.D54G 0.29 tolerated_low_confidence(0.23) benign(0) TCGA-AA-3984-01 18 14105588 14105588 C T ZNF519 Silent p.E317E 0.34 TCGA-AA-3984-01 18 14478815 14478815 A G CXADRP3 RNA 0.23 TCGA-AA-3984-01 18 14772156 14772156 C A ANKRD30B Missense_Mutation p.L420I 0.14 tolerated(0.14) possibly_damaging(0.549) TCGA-AA-3984-01 18 14848737 14848737 C A ANKRD30B Silent p.I949I 0.29 TCGA-AA-3984-01 18 14852019 14852019 C T ANKRD30B Missense_Mutation p.S1240F 0.28 tolerated(0.18) probably_damaging(0.983) TCGA-AA-3984-01 18 18547801 18547801 C T ROCK1 Missense_Mutation p.R1035Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 18 18572895 18572895 C T ROCK1 Missense_Mutation p.R630Q 0.11 deleterious(0.01) possibly_damaging(0.767) TCGA-AA-3984-01 18 19065699 19065699 A G GREB1L Missense_Mutation p.N892S 0.12 tolerated(0.75) benign(0.003) TCGA-AA-3984-01 18 19088119 19088119 C A GREB1L Missense_Mutation p.S1470Y 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 18 19153906 19153906 C T ESCO1 Missense_Mutation p.R300Q 0.25 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 18 19154099 19154099 C T ESCO1 Missense_Mutation p.E236K 0.08 deleterious(0.01) benign(0.006) TCGA-AA-3984-01 18 20606150 20606150 C T RBBP8 Missense_Mutation p.R881C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 18 20951384 20951384 A G TMEM241 Splice_Site p.X162_splice 0.25 TCGA-AA-3984-01 18 21118557 21118557 C T NPC1 Missense_Mutation p.R997K 0.25 tolerated(1) benign(0.001) TCGA-AA-3984-01 18 21134924 21134924 C T NPC1 Missense_Mutation p.E451K 0.25 tolerated(0.36) benign(0.037) TCGA-AA-3984-01 18 21333703 21333703 G A LAMA3 Missense_Mutation p.D292N 0.29 benign(0.434) TCGA-AA-3984-01 18 21736337 21736337 T C CABYR Intron 0.34 TCGA-AA-3984-01 18 22806200 22806200 G T ZNF521 Missense_Mutation p.S561Y 0.26 deleterious(0.01) probably_damaging(0.925) TCGA-AA-3984-01 18 23724532 23724532 C T PSMA8 Nonsense_Mutation p.R38* 0.22 TCGA-AA-3984-01 18 24127126 24127126 C T KCTD1 Intron 0.33 TCGA-AA-3984-01 18 24496923 24496923 T G CHST9 Missense_Mutation p.K211T 0.30 deleterious(0.02) probably_damaging(0.932) TCGA-AA-3984-01 18 25585876 25585876 C A CDH2 Missense_Mutation p.D262Y 0.27 deleterious(0) probably_damaging(0.941) TCGA-AA-3984-01 18 2777839 2777839 T G SMCHD1 Missense_Mutation p.F1801C 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 18 2778215 2778215 C T SMCHD1 Missense_Mutation p.A1842V 0.17 deleterious(0.02) probably_damaging(0.912) TCGA-AA-3984-01 18 2784559 2784559 C T SMCHD1 Missense_Mutation p.R1887W 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 18 28609589 28609589 C T DSC3 Silent p.S120S 0.18 TCGA-AA-3984-01 18 28712616 28712616 C A DSC1 Missense_Mutation p.R718I 0.30 tolerated(0.1) possibly_damaging(0.548) TCGA-AA-3984-01 18 28722027 28722027 C A DSC1 Nonsense_Mutation p.E399* 0.09 TCGA-AA-3984-01 18 28989504 28989504 G T DSG4 Nonsense_Mutation p.E675* 0.09 TCGA-AA-3984-01 18 29041236 29041236 G A DSG3 Missense_Mutation p.R287Q 0.29 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 18 29045364 29045364 G A DSG3 Missense_Mutation p.R452Q 0.31 tolerated(0.11) possibly_damaging(0.847) TCGA-AA-3984-01 18 29339790 29339790 A C SLC25A52 Missense_Mutation p.S289A 0.12 tolerated(0.28) possibly_damaging(0.616) TCGA-AA-3984-01 18 29340061 29340061 G T SLC25A52 Silent p.V198V 0.27 TCGA-AA-3984-01 18 29340259 29340259 G A SLC25A52 Silent p.G132G 0.24 TCGA-AA-3984-01 18 2937819 2937819 C T LPIN2 Missense_Mutation p.E347K 0.20 tolerated(0.32) benign(0.001) TCGA-AA-3984-01 18 2945973 2945973 C T LPIN2 Intron 0.29 TCGA-AA-3984-01 18 29487471 29487471 C A TRAPPC8 Missense_Mutation p.K447N 0.36 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 18 29493411 29493411 C T TRAPPC8 Missense_Mutation p.R231Q 0.08 tolerated(0.13) possibly_damaging(0.832) TCGA-AA-3984-01 18 29790486 29790486 C T MEP1B Silent p.F314F 0.15 TCGA-AA-3984-01 18 29795066 29795066 A G MEP1B Missense_Mutation p.D534G 0.18 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 18 30257204 30257204 G A KLHL14 Nonsense_Mutation p.R560* 0.28 TCGA-AA-3984-01 18 30349854 30349854 G A KLHL14 Missense_Mutation p.S234L 0.17 deleterious(0) benign(0.051) TCGA-AA-3984-01 18 30847175 30847175 A C CCDC178 Missense_Mutation p.F421L 0.32 deleterious(0.05) benign(0.204) TCGA-AA-3984-01 18 30936299 30936299 A G CCDC178 Silent p.S120S 0.30 TCGA-AA-3984-01 18 31537336 31537336 G T NOL4 Missense_Mutation p.T461N 0.07 deleterious(0) benign(0.329) TCGA-AA-3984-01 18 31537469 31537469 G T NOL4 Missense_Mutation p.L417M 0.12 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 18 31538258 31538258 G A NOL4 Missense_Mutation p.S394L 0.07 tolerated(0.06) benign(0.072) TCGA-AA-3984-01 18 3164279 3164279 G A MYOM1 Nonsense_Mutation p.R500* 0.26 TCGA-AA-3984-01 18 32395883 32395883 C T DTNA Missense_Mutation p.T205M 0.35 tolerated(0.31) benign(0.056) TCGA-AA-3984-01 18 32398181 32398181 C T DTNA Missense_Mutation p.R255C 0.09 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 18 32825306 32825306 C T ZNF397 Nonsense_Mutation p.R213* 0.25 TCGA-AA-3984-01 18 32833872 32833872 C T ZSCAN30 Missense_Mutation p.D343N 0.36 tolerated(0.3) benign(0.107) TCGA-AA-3984-01 18 32888657 32888657 C T ZNF271 RNA 0.31 TCGA-AA-3984-01 18 33257665 33257665 G A GALNT1 Missense_Mutation p.R142H 0.27 deleterious(0) probably_damaging(0.987) TCGA-AA-3984-01 18 33289705 33289705 C T GALNT1 Nonsense_Mutation p.R551* 0.27 TCGA-AA-3984-01 18 33740919 33740919 T C ELP2 Silent p.F636F 0.29 TCGA-AA-3984-01 18 34289258 34289258 G A FHOD3 Missense_Mutation p.E638K 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AA-3984-01 18 34376897 34376897 G A TPGS2 Silent p.I258I 0.11 TCGA-AA-3984-01 18 3581931 3581931 G A DLGAP1 Missense_Mutation p.T636M 0.32 tolerated(0.07) benign(0.064) TCGA-AA-3984-01 18 3582185 3582185 C T DLGAP1 Silent p.T551T 0.22 TCGA-AA-3984-01 18 39570468 39570468 C T PIK3C3 Nonsense_Mutation p.R222* 0.30 TCGA-AA-3984-01 18 42531078 42531078 G T SETBP1 Missense_Mutation p.K591N 0.30 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 18 42533090 42533090 G A SETBP1 Missense_Mutation p.R1262K 0.25 tolerated(0.35) benign(0.012) TCGA-AA-3984-01 18 43219737 43219737 C T SLC14A2 Silent p.V290V 0.24 TCGA-AA-3984-01 18 43462450 43462450 G A EPG5 Silent p.F1769F 0.09 TCGA-AA-3984-01 18 43532513 43532513 C T EPG5 Missense_Mutation p.D369N 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-AA-3984-01 18 44068986 44068986 G A LOXHD1 Missense_Mutation p.R889C 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 18 44104552 44104552 C T LOXHD1 Missense_Mutation p.D474N 0.08 tolerated(0.07) probably_damaging(0.939) TCGA-AA-3984-01 18 44157696 44157696 G A LOXHD1 Silent p.S648S 0.19 TCGA-AA-3984-01 18 44268751 44268751 C T ST8SIA5 Missense_Mutation p.R148H 0.30 benign(0.009) TCGA-AA-3984-01 18 44400988 44400988 G A PIAS2 Missense_Mutation p.S519L 0.28 deleterious(0.04) benign(0.027) TCGA-AA-3984-01 18 44554605 44554605 G A TCEB3C Nonsense_Mutation p.R537* 0.04 TCGA-AA-3984-01 18 44560047 44560047 C T TCEB3B Missense_Mutation p.R530H 0.33 tolerated(1) benign(0.048) TCGA-AA-3984-01 18 46383959 46383959 C T CTIF Missense_Mutation p.L512F 0.08 deleterious(0.01) possibly_damaging(0.622) TCGA-AA-3984-01 18 46570372 46570372 G T DYM 3'UTR 0.36 TCGA-AA-3984-01 18 47095890 47095890 C T LIPG Silent p.F181F 0.27 TCGA-AA-3984-01 18 47777208 47777208 C T CCDC11 Missense_Mutation p.E306K 0.31 deleterious(0) possibly_damaging(0.756) TCGA-AA-3984-01 18 48573531 48573531 G A SMAD4 Missense_Mutation p.A39T 0.10 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 18 48573610 48573610 G A SMAD4 Missense_Mutation p.G65E 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 18 48575206 48575206 G A SMAD4 Missense_Mutation p.E134K 0.31 deleterious(0.05) possibly_damaging(0.843) TCGA-AA-3984-01 18 50705344 50705344 G A DCC Silent p.L477L 0.12 TCGA-AA-3984-01 18 50831997 50831997 T G DCC Missense_Mutation p.F654C 0.29 tolerated(0.1) possibly_damaging(0.684) TCGA-AA-3984-01 18 51057112 51057112 C A DCC 3'UTR 0.38 TCGA-AA-3984-01 18 51858192 51858192 G A STARD6 Missense_Mutation p.A102V 0.11 deleterious(0.04) probably_damaging(0.983) TCGA-AA-3984-01 18 52899803 52899803 G A TCF4 Missense_Mutation p.S631L 0.28 tolerated(0.08) benign(0.008) TCGA-AA-3984-01 18 52899832 52899832 A G TCF4 Silent p.G621G 0.28 TCGA-AA-3984-01 18 5398076 5398076 G A EPB41L3 Nonsense_Mutation p.R806* 0.11 TCGA-AA-3984-01 18 54349931 54349931 A G WDR7 Missense_Mutation p.N123D 0.30 tolerated(0.33) benign(0.021) TCGA-AA-3984-01 18 54361947 54361947 T G WDR7 Missense_Mutation p.I355S 0.12 deleterious(0) benign(0.135) TCGA-AA-3984-01 18 55361854 55361854 C A ATP8B1 Missense_Mutation p.R330I 0.07 deleterious(0) possibly_damaging(0.549) TCGA-AA-3984-01 18 55362763 55362763 C A ATP8B1 Nonsense_Mutation p.E234* 0.27 TCGA-AA-3984-01 18 55990492 55990492 C T NEDD4L Nonsense_Mutation p.R147* 0.28 TCGA-AA-3984-01 18 56247733 56247733 G T ALPK2 Missense_Mutation p.S92Y 0.34 deleterious(0.02) possibly_damaging(0.832) TCGA-AA-3984-01 18 56414742 56414742 T C MALT1 Silent p.L715L 0.31 TCGA-AA-3984-01 18 57147461 57147461 G A CCBE1 Silent p.C74C 0.31 TCGA-AA-3984-01 18 58038732 58038732 A G MC4R Missense_Mutation p.F284S 0.10 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 18 58039038 58039038 A G MC4R Missense_Mutation p.I182T 0.09 tolerated(0.52) benign(0.002) TCGA-AA-3984-01 18 5890370 5890370 C T TMEM200C Missense_Mutation p.A565T 0.20 tolerated(0.41) benign(0.013) TCGA-AA-3984-01 18 5891883 5891883 G T TMEM200C Silent p.I60I 0.26 TCGA-AA-3984-01 18 59954690 59954690 T C KIAA1468 Silent p.L1120L 0.30 TCGA-AA-3984-01 18 60562255 60562255 T C PHLPP1 Missense_Mutation p.L693S 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 18 60985546 60985546 C T BCL2 Silent p.Q118Q 0.31 TCGA-AA-3984-01 18 60986069 60986069 T G BCL2 5'UTR 0.08 TCGA-AA-3984-01 18 61067882 61067882 T G VPS4B Missense_Mutation p.K180T 0.12 deleterious(0) probably_damaging(0.926) TCGA-AA-3984-01 18 61260087 61260087 G T SERPINB13 Splice_Site p.X119_splice 0.30 TCGA-AA-3984-01 18 61463559 61463559 G A SERPINB7 Silent p.T132T 0.32 TCGA-AA-3984-01 18 61570474 61570474 C A SERPINB2 Missense_Mutation p.L395I 0.21 tolerated(0.06) benign(0.257) TCGA-AA-3984-01 18 61650848 61650848 G A SERPINB8 Missense_Mutation p.D154N 0.28 tolerated(0.57) benign(0) TCGA-AA-3984-01 18 61654500 61654500 C A SERPINB8 Missense_Mutation p.F371L 0.09 tolerated(0.13) benign(0.327) TCGA-AA-3984-01 18 618095 618095 A T CLUL1 Missense_Mutation p.E32V 0.29 deleterious(0.04) possibly_damaging(0.653) TCGA-AA-3984-01 18 6241430 6241430 A C L3MBTL4 Missense_Mutation p.F160C 0.26 deleterious(0.01) benign(0.079) TCGA-AA-3984-01 18 63511273 63511273 G T CDH7 Missense_Mutation p.D403Y 0.31 deleterious(0.01) possibly_damaging(0.896) TCGA-AA-3984-01 18 65181467 65181467 G T DSEL Missense_Mutation p.P137T 0.15 tolerated(0.07) possibly_damaging(0.625) TCGA-AA-3984-01 18 66364379 66364379 A C TMX3 Intron 0.33 TCGA-AA-3984-01 18 66504253 66504253 G A CCDC102B Missense_Mutation p.A85T 0.31 deleterious(0) probably_damaging(0.955) TCGA-AA-3984-01 18 67614763 67614763 C A CD226 Intron 0.33 TCGA-AA-3984-01 18 67993624 67993624 T G SOCS6 3'UTR 0.33 TCGA-AA-3984-01 18 67994042 67994042 C T SOCS6 3'UTR 0.29 TCGA-AA-3984-01 18 67994489 67994489 C A SOCS6 3'UTR 0.27 TCGA-AA-3984-01 18 6851103 6851103 T G ARHGAP28 Missense_Mutation p.V46G 0.12 tolerated(0.11) benign(0.333) TCGA-AA-3984-01 18 6942125 6942125 C T LAMA1 Missense_Mutation p.E3061K 0.21 deleterious(0.01) benign(0.029) TCGA-AA-3984-01 18 6985566 6985566 G A LAMA1 Missense_Mutation p.A1819V 0.08 tolerated(0.17) benign(0.05) TCGA-AA-3984-01 18 73000639 73000639 C T TSHZ1 3'UTR 0.25 TCGA-AA-3984-01 18 74583720 74583720 G A ZNF236 Silent p.P200P 0.13 TCGA-AA-3984-01 18 74639913 74639913 C T ZNF236 Missense_Mutation p.S1480L 0.27 deleterious(0) benign(0.386) TCGA-AA-3984-01 18 76753284 76753284 C T SALL3 Silent p.S431S 0.50 TCGA-AA-3984-01 18 76936828 76936828 G A ATP9B Missense_Mutation p.R265Q 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 18 77659641 77659641 C T KCNG2 Missense_Mutation p.S409L 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3984-01 18 77797441 77797441 A G RBFA Missense_Mutation p.T105A 0.14 tolerated(0.22) benign(0.056) TCGA-AA-3984-01 18 8825114 8825114 C T SOGA2 Silent p.V1202V 0.18 TCGA-AA-3984-01 18 8825986 8825986 C T SOGA2 Missense_Mutation p.S1493L 0.08 deleterious(0.01) benign(0.157) TCGA-AA-3984-01 18 8831911 8831911 G T SOGA2 3'UTR 0.32 TCGA-AA-3984-01 18 9195623 9195623 G T ANKRD12 Missense_Mutation p.E54D 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3984-01 18 9550296 9550296 G A PPP4R1 Missense_Mutation p.R798C 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 18 9886217 9886217 G A TXNDC2 Missense_Mutation p.A16T 0.08 tolerated(0.16) benign(0.28) TCGA-AA-3984-01 19 1005098 1005098 G A GRIN3B Missense_Mutation p.S533N 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 19 10394362 10394362 C T ICAM1 Silent p.H179H 0.35 TCGA-AA-3984-01 19 10404455 10404455 C T ICAM5 Missense_Mutation p.A516V 0.20 deleterious(0.05) probably_damaging(0.964) TCGA-AA-3984-01 19 10600346 10600346 C A KEAP1 Missense_Mutation p.M503I 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-AA-3984-01 19 10624446 10624446 G T S1PR5 3'UTR 0.20 TCGA-AA-3984-01 19 1090978 1090978 C T POLR2E Missense_Mutation p.D120N 0.45 deleterious(0.02) possibly_damaging(0.707) TCGA-AA-3984-01 19 11569284 11569284 T C ELAVL3 Missense_Mutation p.D159G 0.39 deleterious(0) probably_damaging(0.976) TCGA-AA-3984-01 19 11728369 11728369 C T ZNF627 Nonsense_Mutation p.R351* 0.14 TCGA-AA-3984-01 19 11917241 11917241 G A ZNF491 Missense_Mutation p.R158Q 0.27 deleterious(0.01) benign(0.094) TCGA-AA-3984-01 19 11917976 11917976 G T ZNF491 Missense_Mutation p.R403I 0.10 deleterious(0.02) probably_damaging(0.956) TCGA-AA-3984-01 19 12089548 12089548 C A ZNF763 Missense_Mutation p.S273Y 0.21 tolerated(0.21) probably_damaging(0.919) TCGA-AA-3984-01 19 12186813 12186813 T C ZNF844 Missense_Mutation p.F293S 0.27 tolerated(0.42) benign(0.004) TCGA-AA-3984-01 19 12187241 12187241 G A ZNF844 Missense_Mutation p.D436N 0.29 tolerated(0.33) benign(0.326) TCGA-AA-3984-01 19 12256780 12256780 G A ZNF625 Nonsense_Mutation p.R151* 0.26 TCGA-AA-3984-01 19 12298480 12298480 C T ZNF136 Silent p.F429F 0.08 TCGA-AA-3984-01 19 12428679 12428679 G T ZNF563 3'UTR 0.26 TCGA-AA-3984-01 19 12429364 12429364 T G ZNF563 3'UTR 0.24 TCGA-AA-3984-01 19 12575218 12575218 A G ZNF709 Silent p.C506C 0.38 TCGA-AA-3984-01 19 12637432 12637432 C A ZNF564 Missense_Mutation p.R497I 0.24 deleterious(0.02) benign(0.301) TCGA-AA-3984-01 19 12637936 12637936 C A ZNF564 Missense_Mutation p.R329I 0.31 deleterious(0.05) possibly_damaging(0.856) TCGA-AA-3984-01 19 12691504 12691504 C T ZNF490 Missense_Mutation p.R462Q 0.12 tolerated(0.46) benign(0.082) TCGA-AA-3984-01 19 12775618 12775618 C T MAN2B1 Silent p.S206S 0.27 TCGA-AA-3984-01 19 12829980 12829980 C T TNPO2 Missense_Mutation p.R63H 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 13363807 13363807 G T CACNA1A Missense_Mutation p.L1622M 0.27 probably_damaging(0.934) TCGA-AA-3984-01 19 13365981 13365981 G A CACNA1A Silent p.F1561F 0.39 TCGA-AA-3984-01 19 1440375 1440375 G A RPS15 Missense_Mutation p.E118K 0.23 deleterious(0.04) possibly_damaging(0.593) TCGA-AA-3984-01 19 1457978 1457978 G A APC2 Missense_Mutation p.E408K 0.22 probably_damaging(0.978) TCGA-AA-3984-01 19 14830149 14830149 T C ZNF333 3'UTR 0.10 TCGA-AA-3984-01 19 14883285 14883285 G A EMR2 Missense_Mutation p.S75L 0.27 tolerated(0.66) benign(0.002) TCGA-AA-3984-01 19 14938387 14938387 A C OR7A5 Missense_Mutation p.S223A 0.35 deleterious_low_confidence(0.03) benign(0.33) TCGA-AA-3984-01 19 15052966 15052966 C A OR7C2 Missense_Mutation p.F222L 0.08 deleterious_low_confidence(0.04) benign(0.03) TCGA-AA-3984-01 19 15072848 15072848 C A SLC1A6 Nonsense_Mutation p.E301* 0.19 TCGA-AA-3984-01 19 15230829 15230829 C T ILVBL Silent p.P260P 0.37 TCGA-AA-3984-01 19 15296322 15296322 C T NOTCH3 Missense_Mutation p.G707D 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 19 15484055 15484055 G A AKAP8 Silent p.F156F 0.09 TCGA-AA-3984-01 19 15770163 15770163 G A CYP4F3 Missense_Mutation p.G511R 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 19 15918864 15918864 G T OR10H1 5'UTR 0.20 TCGA-AA-3984-01 19 16514555 16514555 C T EPS15L1 Missense_Mutation p.E539K 0.17 deleterious(0.01) benign(0.198) TCGA-AA-3984-01 19 16677453 16677453 G A SLC35E1 Missense_Mutation p.R216W 0.30 deleterious(0.02) possibly_damaging(0.892) TCGA-AA-3984-01 19 17004023 17004023 C T CPAMD8 Missense_Mutation p.A1899T 0.11 deleterious_low_confidence(0.04) benign(0) TCGA-AA-3984-01 19 17611658 17611658 G A SLC27A1 Missense_Mutation p.V537M 0.35 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 19 17664172 17664172 A G FAM129C Missense_Mutation p.T632A 0.13 tolerated_low_confidence(0.65) benign(0) TCGA-AA-3984-01 19 17749897 17749897 C T UNC13A Missense_Mutation p.D1026N 0.28 tolerated(0.07) benign(0.137) TCGA-AA-3984-01 19 17756912 17756912 C T UNC13A Missense_Mutation p.A685T 0.20 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 19 1782229 1782229 C T ATP8B3 3'UTR 0.20 TCGA-AA-3984-01 19 1782298 1782298 C T ATP8B3 3'UTR 0.23 TCGA-AA-3984-01 19 17885217 17885217 C T FCHO1 Missense_Mutation p.R284W 0.16 deleterious(0) possibly_damaging(0.889) TCGA-AA-3984-01 19 17887057 17887057 G A FCHO1 Missense_Mutation p.G395D 0.39 tolerated(0.17) probably_damaging(1) TCGA-AA-3984-01 19 17932156 17932156 C T INSL3 Missense_Mutation p.E54K 0.40 deleterious_low_confidence(0.03) probably_damaging(0.982) TCGA-AA-3984-01 19 17943428 17943428 G A JAK3 Silent p.S860S 0.29 TCGA-AA-3984-01 19 18085010 18085010 C T KCNN1 Missense_Mutation p.R105C 0.10 deleterious(0) probably_damaging(0.987) TCGA-AA-3984-01 19 18239715 18239715 G A MAST3 Missense_Mutation p.E364K 0.10 deleterious(0) possibly_damaging(0.59) TCGA-AA-3984-01 19 18377387 18377387 C A KIAA1683 Missense_Mutation p.E321D 0.40 tolerated(0.2) benign(0.069) TCGA-AA-3984-01 19 18507640 18507640 A C LRRC25 Missense_Mutation p.F45C 0.30 deleterious(0) probably_damaging(0.953) TCGA-AA-3984-01 19 19017872 19017872 C T COPE Missense_Mutation p.V114M 0.27 tolerated(0.16) benign(0.301) TCGA-AA-3984-01 19 19035498 19035498 G A DDX49 Missense_Mutation p.V307M 0.24 deleterious(0) probably_damaging(0.984) TCGA-AA-3984-01 19 19329864 19329864 G T NCAN Missense_Mutation p.D72Y 0.32 deleterious(0) probably_damaging(0.947) TCGA-AA-3984-01 19 19335156 19335156 G A NCAN Missense_Mutation p.R231H 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 19375379 19375379 T C TM6SF2 3'UTR 0.22 TCGA-AA-3984-01 19 19603496 19603496 T C GATAD2A Missense_Mutation p.I170T 0.12 deleterious(0.02) benign(0.309) TCGA-AA-3984-01 19 19654086 19654086 G A CILP2 Missense_Mutation p.R336Q 0.24 tolerated(0.57) benign(0.005) TCGA-AA-3984-01 19 19756325 19756325 G A ATP13A1 Missense_Mutation p.A1174V 0.21 tolerated(0.61) benign(0.003) TCGA-AA-3984-01 19 19760574 19760574 G A ATP13A1 Silent p.F837F 0.27 TCGA-AA-3984-01 19 19822283 19822283 G A ZNF14 Nonsense_Mutation p.R603* 0.15 TCGA-AA-3984-01 19 19822451 19822451 G A ZNF14 Nonsense_Mutation p.R547* 0.26 TCGA-AA-3984-01 19 19905399 19905399 G A ZNF506 Missense_Mutation p.L433F 0.26 tolerated_low_confidence(0.08) benign(0.276) TCGA-AA-3984-01 19 20228745 20228745 A C ZNF90 Silent p.R128R 0.23 TCGA-AA-3984-01 19 20727675 20727675 C A ZNF737 Missense_Mutation p.R445I 0.38 tolerated(0.22) benign(0.006) TCGA-AA-3984-01 19 21476113 21476113 C A ZNF708 Missense_Mutation p.R552I 0.25 tolerated(0.45) benign(0.002) TCGA-AA-3984-01 19 21609986 21609986 C A ZNF493 3'UTR 0.22 TCGA-AA-3984-01 19 21992291 21992291 A C ZNF43 Missense_Mutation p.F183C 0.28 deleterious(0.02) possibly_damaging(0.722) TCGA-AA-3984-01 19 22154487 22154487 C A ZNF208 Nonsense_Mutation p.E1117* 0.14 TCGA-AA-3984-01 19 22156098 22156098 G A ZNF208 Missense_Mutation p.P580S 0.48 deleterious(0.03) probably_damaging(0.967) TCGA-AA-3984-01 19 22271325 22271325 A C ZNF257 Missense_Mutation p.K258T 0.08 tolerated(0.11) possibly_damaging(0.593) TCGA-AA-3984-01 19 22574927 22574927 T C ZNF98 Silent p.R370R 0.25 TCGA-AA-3984-01 19 22847041 22847041 T G ZNF492 Missense_Mutation p.I190M 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3984-01 19 2291287 2291287 T C LINGO3 Silent p.V163V 0.38 TCGA-AA-3984-01 19 22940502 22940502 C A ZNF99 Nonsense_Mutation p.E737* 0.17 TCGA-AA-3984-01 19 22941049 22941049 T G ZNF99 Missense_Mutation p.K554N 0.18 tolerated(0.37) possibly_damaging(0.802) TCGA-AA-3984-01 19 23316961 23316961 T G ZNF730 Nonsense_Mutation p.L28* 0.13 TCGA-AA-3984-01 19 23328429 23328429 C A ZNF730 Missense_Mutation p.H195N 0.40 deleterious(0.02) probably_damaging(0.943) TCGA-AA-3984-01 19 23405806 23405806 C A ZNF724P Missense_Mutation p.R414I 0.21 tolerated(0.44) probably_damaging(0.95) TCGA-AA-3984-01 19 23543144 23543144 C A ZNF91 Missense_Mutation p.E879D 0.10 deleterious(0.02) benign(0.116) TCGA-AA-3984-01 19 23543832 23543832 C A ZNF91 Missense_Mutation p.R650I 0.20 tolerated(0.23) benign(0.412) TCGA-AA-3984-01 19 2832313 2832313 A G ZNF554 Missense_Mutation p.N89S 0.09 tolerated(0.41) benign(0.017) TCGA-AA-3984-01 19 2851631 2851631 A G ZNF555 Missense_Mutation p.N99S 0.10 tolerated(0.13) benign(0) TCGA-AA-3984-01 19 287533 287533 C T PPAP2C Silent p.S162S 0.15 TCGA-AA-3984-01 19 2877779 2877779 C T ZNF556 Nonsense_Mutation p.R275* 0.30 TCGA-AA-3984-01 19 2878237 2878237 C T ZNF556 Silent p.C427C 0.34 TCGA-AA-3984-01 19 2989174 2989174 G A TLE6 Missense_Mutation p.G286R 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 30313016 30313016 A C CCNE1 Missense_Mutation p.Q273H 0.38 tolerated(0.32) benign(0.024) TCGA-AA-3984-01 19 30496605 30496605 C T URI1 Silent p.F169F 0.27 TCGA-AA-3984-01 19 30934836 30934836 G A ZNF536 Missense_Mutation p.D123N 0.37 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 19 327988 327988 C T MIER2 Missense_Mutation p.S82N 0.23 tolerated(0.18) benign(0.013) TCGA-AA-3984-01 19 33240767 33240767 G T TDRD12 Missense_Mutation p.D192Y 0.18 deleterious(0) benign(0.11) TCGA-AA-3984-01 19 33623191 33623191 C T WDR88 Missense_Mutation p.A39V 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3984-01 19 33698281 33698281 G A LRP3 Missense_Mutation p.E705K 0.25 deleterious_low_confidence(0.04) benign(0.007) TCGA-AA-3984-01 19 34302773 34302773 G A KCTD15 Intron 0.27 TCGA-AA-3984-01 19 34712587 34712587 C T LSM14A Missense_Mutation p.R438C 0.30 tolerated_low_confidence(0.09) probably_damaging(0.96) TCGA-AA-3984-01 19 34942992 34942992 C T UBA2 Silent p.I326I 0.13 TCGA-AA-3984-01 19 35512456 35512456 C T GRAMD1A Missense_Mutation p.S509L 0.32 deleterious(0.02) benign(0.326) TCGA-AA-3984-01 19 35612259 35612259 G A FXYD3 Intron 0.36 TCGA-AA-3984-01 19 3574575 3574575 G A HMG20B Silent p.T114T 0.37 TCGA-AA-3984-01 19 35823639 35823639 G T CD22 Missense_Mutation p.R75I 0.29 tolerated(1) benign(0.001) TCGA-AA-3984-01 19 35836011 35836011 C A CD22 Missense_Mutation p.F730L 0.21 tolerated(0.07) probably_damaging(0.997) TCGA-AA-3984-01 19 3600492 3600492 G A TBXA2R Silent p.S47S 0.33 TCGA-AA-3984-01 19 36211219 36211219 G A KMT2B Missense_Mutation p.E324K 0.29 unknown(0) TCGA-AA-3984-01 19 36278268 36278268 C T ARHGAP33 Missense_Mutation p.S773L 0.21 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AA-3984-01 19 36398429 36398429 C A TYROBP Missense_Mutation p.D50Y 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 19 36557203 36557203 G T WDR62 Missense_Mutation p.K145N 0.10 deleterious(0.01) probably_damaging(0.982) TCGA-AA-3984-01 19 36640517 36640517 A C CAPNS1 Missense_Mutation p.Q253H 0.34 tolerated(0.4) benign(0.004) TCGA-AA-3984-01 19 367160 367160 T G THEG Missense_Mutation p.K273T 0.27 tolerated(0.05) benign(0.276) TCGA-AA-3984-01 19 37004897 37004897 G T ZNF260 3'UTR 0.30 TCGA-AA-3984-01 19 37005035 37005035 A C ZNF260 Missense_Mutation p.F369C 0.16 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 19 37047030 37047030 G T ZNF529 Missense_Mutation p.F28L 0.23 tolerated(0.14) benign(0.001) TCGA-AA-3984-01 19 37117137 37117137 G A ZNF382 Missense_Mutation p.R113K 0.08 tolerated(0.43) benign(0.001) TCGA-AA-3984-01 19 37310450 37310450 G T ZNF790 Missense_Mutation p.H266N 0.28 tolerated(0.37) benign(0.439) TCGA-AA-3984-01 19 37441368 37441368 G A ZNF568 Missense_Mutation p.R438Q 0.21 deleterious(0) possibly_damaging(0.702) TCGA-AA-3984-01 19 37488226 37488226 C T ZNF568 Missense_Mutation p.R481C 0.22 tolerated(0.13) probably_damaging(0.993) TCGA-AA-3984-01 19 37619545 37619545 G T ZNF420 Missense_Mutation p.R551I 0.10 tolerated(0.08) possibly_damaging(0.671) TCGA-AA-3984-01 19 37619797 37619797 G T ZNF420 Missense_Mutation p.R635I 0.16 deleterious(0.04) possibly_damaging(0.671) TCGA-AA-3984-01 19 37643328 37643328 C A ZNF585A Missense_Mutation p.E436D 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-AA-3984-01 19 37676425 37676425 G A ZNF585B Nonsense_Mutation p.R672* 0.29 TCGA-AA-3984-01 19 37734043 37734043 G A ZNF383 Missense_Mutation p.R302Q 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-AA-3984-01 19 37880847 37880847 C A ZNF527 3'UTR 0.31 TCGA-AA-3984-01 19 37904014 37904014 G T ZNF569 Missense_Mutation p.H516N 0.28 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 19 38055681 38055681 C A ZNF571 Missense_Mutation p.R550I 0.09 deleterious(0.04) possibly_damaging(0.638) TCGA-AA-3984-01 19 3813930 3813930 G A ZFR2 Silent p.V710V 0.22 TCGA-AA-3984-01 19 38161136 38161136 C A ZNF781 5'UTR 0.10 TCGA-AA-3984-01 19 38229484 38229484 T G ZNF573 Missense_Mutation p.K636T 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3984-01 19 38377168 38377168 C A WDR87 Missense_Mutation p.E2342D 0.27 unknown(0) TCGA-AA-3984-01 19 38378066 38378066 C T WDR87 Missense_Mutation p.R2043K 0.28 probably_damaging(0.967) TCGA-AA-3984-01 19 38378410 38378410 C A WDR87 Missense_Mutation p.E1928D 0.14 benign(0.063) TCGA-AA-3984-01 19 38380027 38380027 C T WDR87 Silent p.K1389K 0.10 TCGA-AA-3984-01 19 38383334 38383334 C A WDR87 Missense_Mutation p.M964I 0.36 probably_damaging(0.987) TCGA-AA-3984-01 19 38383580 38383580 C A WDR87 Missense_Mutation p.M882I 0.25 benign(0.044) TCGA-AA-3984-01 19 38572232 38572232 C T SIPA1L3 Silent p.S9S 0.20 TCGA-AA-3984-01 19 38845389 38845389 A C CATSPERG Missense_Mutation p.K346T 0.33 deleterious(0) possibly_damaging(0.607) TCGA-AA-3984-01 19 3885753 3885753 C A ATCAY 5'UTR 0.16 TCGA-AA-3984-01 19 39002769 39002769 C T RYR1 Missense_Mutation p.A3077V 0.31 benign(0.032) TCGA-AA-3984-01 19 39076754 39076754 C T RYR1 Silent p.I4964I 0.35 TCGA-AA-3984-01 19 3978065 3978065 G A EEF2 Missense_Mutation p.R607W 0.27 deleterious(0.05) benign(0.394) TCGA-AA-3984-01 19 39804931 39804931 A G LRFN1 Missense_Mutation p.V349A 0.39 tolerated(0.16) benign(0.027) TCGA-AA-3984-01 19 39965027 39965027 G A SUPT5H Silent p.S935S 0.24 TCGA-AA-3984-01 19 40149152 40149152 G A LGALS16 Missense_Mutation p.E49K 0.14 deleterious(0) benign(0.185) TCGA-AA-3984-01 19 40196417 40196417 C T LGALS14 5'UTR 0.35 TCGA-AA-3984-01 19 40197274 40197274 C T LGALS14 Missense_Mutation p.S47L 0.10 tolerated(0.22) possibly_damaging(0.85) TCGA-AA-3984-01 19 40224964 40224964 C A CLC Nonsense_Mutation p.E88* 0.16 TCGA-AA-3984-01 19 40354296 40354296 C T FCGBP Silent p.A5391A 0.08 TCGA-AA-3984-01 19 40421346 40421346 C T FCGBP Missense_Mutation p.D859N 0.18 benign(0.18) TCGA-AA-3984-01 19 40521651 40521651 G T ZNF546 Missense_Mutation p.R825I 0.33 deleterious(0.01) benign(0.103) TCGA-AA-3984-01 19 4054020 4054020 T C ZBTB7A Missense_Mutation p.H404R 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 19 40740994 40740994 C A AKT2 Nonsense_Mutation p.E442* 0.29 TCGA-AA-3984-01 19 40741951 40741951 A G AKT2 Missense_Mutation p.Y341H 0.37 deleterious(0.03) probably_damaging(1) TCGA-AA-3984-01 19 40842077 40842077 G A C19orf47 Silent p.G91G 0.08 TCGA-AA-3984-01 19 40880481 40880481 G A PLD3 Missense_Mutation p.A325T 0.22 deleterious(0) possibly_damaging(0.904) TCGA-AA-3984-01 19 41003410 41003410 A G SPTBN4 Missense_Mutation p.D228G 0.23 deleterious(0) benign(0) TCGA-AA-3984-01 19 41066437 41066437 C A SPTBN4 Intron 0.17 TCGA-AA-3984-01 19 41186938 41186938 C T NUMBL Missense_Mutation p.E142K 0.22 deleterious(0) benign(0.03) TCGA-AA-3984-01 19 41765810 41765810 G A AXL 3'UTR 0.27 TCGA-AA-3984-01 19 41787179 41787179 C T HNRNPUL1 Missense_Mutation p.A333V 0.29 tolerated(1) unknown(0) TCGA-AA-3984-01 19 41825582 41825582 C T CCDC97 Silent p.T202T 0.28 TCGA-AA-3984-01 19 42128106 42128106 C T CEACAM4 Missense_Mutation p.A154T 0.27 tolerated(0.3) possibly_damaging(0.468) TCGA-AA-3984-01 19 4216935 4216935 G A ANKRD24 Missense_Mutation p.G593E 0.09 tolerated_low_confidence(0.13) benign(0.005) TCGA-AA-3984-01 19 42473707 42473707 G T ATP1A3 Missense_Mutation p.F869L 0.21 deleterious(0.03) possibly_damaging(0.638) TCGA-AA-3984-01 19 42558029 42558029 C T GRIK5 Missense_Mutation p.R370K 0.26 deleterious(0) probably_damaging(0.961) TCGA-AA-3984-01 19 42585280 42585280 G A ZNF574 Missense_Mutation p.R841H 0.32 deleterious(0.01) possibly_damaging(0.84) TCGA-AA-3984-01 19 42636601 42636601 C A POU2F2 5'Flank 0.23 TCGA-AA-3984-01 19 42911848 42911848 C T LIPE Silent p.T584T 0.21 TCGA-AA-3984-01 19 43031245 43031245 G T CEACAM1 Silent p.V124V 0.09 TCGA-AA-3984-01 19 43093178 43093178 G A CEACAM8 Missense_Mutation p.A239V 0.10 tolerated(0.31) benign(0.042) TCGA-AA-3984-01 19 43233419 43233419 T C PSG3 Missense_Mutation p.T367A 0.30 tolerated(0.42) possibly_damaging(0.728) TCGA-AA-3984-01 19 43258539 43258539 G A PSG8 Missense_Mutation p.R397C 0.07 deleterious(0.01) probably_damaging(0.956) TCGA-AA-3984-01 19 43258646 43258646 G A PSG8 Missense_Mutation p.P361L 0.06 tolerated(0.16) benign(0.221) TCGA-AA-3984-01 19 4333981 4333981 G A STAP2 Missense_Mutation p.R55W 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 19 4338660 4338660 G A STAP2 Missense_Mutation p.P31S 0.25 tolerated(0.34) benign(0.02) TCGA-AA-3984-01 19 43698666 43698666 C T PSG4 Missense_Mutation p.E357K 0.34 deleterious(0.03) possibly_damaging(0.504) TCGA-AA-3984-01 19 43708088 43708088 C T PSG4 Missense_Mutation p.R127Q 0.06 tolerated(0.2) benign(0.199) TCGA-AA-3984-01 19 43708169 43708169 C A PSG4 Missense_Mutation p.R100I 0.24 tolerated(0.06) benign(0.029) TCGA-AA-3984-01 19 43766260 43766260 C T PSG9 Missense_Mutation p.S154N 0.19 tolerated(0.96) benign(0.313) TCGA-AA-3984-01 19 43965628 43965628 G A LYPD3 Missense_Mutation p.R306C 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-3984-01 19 44222647 44222647 G A IRGC Intron 0.19 TCGA-AA-3984-01 19 44284897 44284897 G T KCNN4 Silent p.L39L 0.25 TCGA-AA-3984-01 19 44303861 44303861 T C LYPD5 Missense_Mutation p.T64A 0.42 deleterious(0.01) possibly_damaging(0.609) TCGA-AA-3984-01 19 44351185 44351185 T C ZNF283 Silent p.S144S 0.41 TCGA-AA-3984-01 19 44351563 44351563 G A ZNF283 Silent p.K270K 0.27 TCGA-AA-3984-01 19 44352357 44352357 G A ZNF283 Missense_Mutation p.R535K 0.26 tolerated(0.16) benign(0.043) TCGA-AA-3984-01 19 44352609 44352609 G T ZNF283 Missense_Mutation p.R619I 0.28 deleterious(0.02) benign(0) TCGA-AA-3984-01 19 44470911 44470911 A C ZNF221 Missense_Mutation p.Q419H 0.36 deleterious(0) possibly_damaging(0.637) TCGA-AA-3984-01 19 44536381 44536381 G A ZNF222 Missense_Mutation p.S225N 0.31 tolerated(0.2) benign(0.036) TCGA-AA-3984-01 19 44580475 44580475 G A ZNF284 Intron 0.33 TCGA-AA-3984-01 19 44660856 44660856 G T ZNF234 Missense_Mutation p.E229D 0.32 tolerated(0.05) benign(0.02) TCGA-AA-3984-01 19 44732672 44732672 G T ZNF227 Missense_Mutation p.R45M 0.11 deleterious(0) possibly_damaging(0.853) TCGA-AA-3984-01 19 44791787 44791787 A G ZNF235 Missense_Mutation p.C601R 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 19 44791931 44791931 T G ZNF235 Missense_Mutation p.N553H 0.26 deleterious(0) probably_damaging(0.989) TCGA-AA-3984-01 19 44831754 44831754 C A ZNF112 Missense_Mutation p.E858D 0.11 tolerated(0.09) probably_damaging(0.989) TCGA-AA-3984-01 19 44891132 44891132 C T ZNF285 Silent p.E425E 0.15 TCGA-AA-3984-01 19 44892220 44892220 A G ZNF285 Silent p.L63L 0.24 TCGA-AA-3984-01 19 44980932 44980932 C A ZNF180 Missense_Mutation p.S589I 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-AA-3984-01 19 44981115 44981115 T G ZNF180 Missense_Mutation p.K528T 0.36 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 19 45445518 45445518 G A APOC4 5'UTR 0.31 TCGA-AA-3984-01 19 45448485 45448485 G A APOC4 Missense_Mutation p.E103K 0.16 deleterious(0.04) benign(0.001) TCGA-AA-3984-01 19 45574096 45574096 G A CLASRP Missense_Mutation p.R673Q 0.32 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 19 45889209 45889209 C T PPP1R13L Missense_Mutation p.D652N 0.23 tolerated(0.12) possibly_damaging(0.558) TCGA-AA-3984-01 19 45974495 45974495 G A FOSB Missense_Mutation p.R164Q 0.24 deleterious(0) possibly_damaging(0.553) TCGA-AA-3984-01 19 46117888 46117888 A C EML2 Silent p.T757T 0.28 TCGA-AA-3984-01 19 467698 467698 G T ODF3L2 Silent p.G100G 0.26 TCGA-AA-3984-01 19 47423208 47423208 G A ARHGAP35 Missense_Mutation p.E426K 0.27 deleterious(0.01) possibly_damaging(0.634) TCGA-AA-3984-01 19 47570382 47570382 C T ZC3H4 Missense_Mutation p.R1048H 0.25 unknown(0) TCGA-AA-3984-01 19 47761655 47761655 G A CCDC9 5'UTR 0.24 TCGA-AA-3984-01 19 47844186 47844186 G A C5AR2 Missense_Mutation p.A44T 0.38 tolerated(0.17) benign(0.032) TCGA-AA-3984-01 19 4793084 4793084 C T FEM1A Silent p.F406F 0.17 TCGA-AA-3984-01 19 47960730 47960730 C T SLC8A2 Missense_Mutation p.S266N 0.41 tolerated(0.35) benign(0.002) TCGA-AA-3984-01 19 4817010 4817010 G A TICAM1 Silent p.F460F 0.10 TCGA-AA-3984-01 19 48239733 48239733 G T EHD2 Missense_Mutation p.K341N 0.29 tolerated(0.15) benign(0.091) TCGA-AA-3984-01 19 48374668 48374668 G A SULT2A1 3'UTR 0.20 TCGA-AA-3984-01 19 48386856 48386856 G T SULT2A1 Missense_Mutation p.S108Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 48607874 48607874 C T PLA2G4C Silent p.T86T 0.11 TCGA-AA-3984-01 19 48714976 48714976 C A CARD8 Missense_Mutation p.Q535H 0.27 tolerated(0.08) benign(0.031) TCGA-AA-3984-01 19 48783061 48783061 C T ZNF114 Missense_Mutation p.S2F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-AA-3984-01 19 48801598 48801598 C A CCDC114 Splice_Site p.X377_splice 0.33 TCGA-AA-3984-01 19 48815300 48815300 T G CCDC114 Missense_Mutation p.K108T 0.31 tolerated(0.1) probably_damaging(0.999) TCGA-AA-3984-01 19 48917832 48917832 G A GRIN2D Missense_Mutation p.R468Q 0.30 tolerated(0.2) benign(0.049) TCGA-AA-3984-01 19 49228169 49228169 C T RASIP1 Missense_Mutation p.A726T 0.32 tolerated(0.34) benign(0.134) TCGA-AA-3984-01 19 4956813 4956813 A C UHRF1 RNA 0.10 TCGA-AA-3984-01 19 49651449 49651449 G A PPFIA3 Missense_Mutation p.R982Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 498653 498653 C T MADCAM1 Silent p.G165G 0.30 TCGA-AA-3984-01 19 50139083 50139083 G A RRAS Silent p.F160F 0.31 TCGA-AA-3984-01 19 50154138 50154138 G A SCAF1 Silent p.S164S 0.10 TCGA-AA-3984-01 19 50462324 50462324 C A SIGLEC11 Missense_Mutation p.E356D 0.20 deleterious(0.02) benign(0.269) TCGA-AA-3984-01 19 50462656 50462656 G T SIGLEC11 Missense_Mutation p.L340I 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 19 50549532 50549532 G T ZNF473 Missense_Mutation p.R611I 0.24 deleterious(0.04) benign(0.308) TCGA-AA-3984-01 19 50826970 50826970 G A KCNC3 Missense_Mutation p.R414W 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 50880880 50880880 G A NR1H2 Silent p.T6T 0.32 TCGA-AA-3984-01 19 50979458 50979458 G A FAM71E1 Missense_Mutation p.A63V 0.22 tolerated_low_confidence(0.09) benign(0.071) TCGA-AA-3984-01 19 51017800 51017800 G A ASPDH 5'Flank 0.12 TCGA-AA-3984-01 19 51189506 51189506 G T SHANK1 Missense_Mutation p.F855L 0.34 benign(0.027) TCGA-AA-3984-01 19 51226701 51226701 G A CLEC11A 5'UTR 0.33 TCGA-AA-3984-01 19 51328967 51328967 C T KLK15 3'Flank 0.32 TCGA-AA-3984-01 19 51411635 51411635 C A KLK4 Missense_Mutation p.D198Y 0.17 deleterious(0.02) probably_damaging(0.927) TCGA-AA-3984-01 19 51586045 51586045 C T KLK14 5'UTR 0.42 TCGA-AA-3984-01 19 51870369 51870369 C A CLDND2 3'UTR 0.09 TCGA-AA-3984-01 19 51883886 51883886 G A LIM2 Silent p.F153F 0.16 TCGA-AA-3984-01 19 51920851 51920851 G A SIGLEC10 5'UTR 0.23 TCGA-AA-3984-01 19 51955554 51955554 T C SIGLEC8 3'UTR 0.25 TCGA-AA-3984-01 19 51983846 51983846 G A CEACAM18 Silent p.P165P 0.25 TCGA-AA-3984-01 19 51984890 51984890 G T CEACAM18 Missense_Mutation p.R276I 0.39 deleterious(0) possibly_damaging(0.564) TCGA-AA-3984-01 19 51986338 51986338 C T CEACAM18 Silent p.I308I 0.12 TCGA-AA-3984-01 19 52147284 52147284 G A SIGLEC14 Missense_Mutation p.R254W 0.34 deleterious(0) possibly_damaging(0.892) TCGA-AA-3984-01 19 52273323 52273323 A C FPR2 3'UTR 0.31 TCGA-AA-3984-01 19 52273541 52273541 A C FPR2 3'UTR 0.28 TCGA-AA-3984-01 19 52328442 52328442 G T FPR3 3'UTR 0.31 TCGA-AA-3984-01 19 52496734 52496734 C T ZNF615 Missense_Mutation p.R543Q 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-AA-3984-01 19 52497937 52497937 T C ZNF615 Missense_Mutation p.D142G 0.34 tolerated(0.37) benign(0) TCGA-AA-3984-01 19 52519080 52519080 C T ZNF614 3'UTR 0.12 TCGA-AA-3984-01 19 52519879 52519879 G T ZNF614 Missense_Mutation p.F324L 0.12 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 19 52570461 52570461 C T ZNF841 Missense_Mutation p.R225K 0.25 deleterious(0.04) benign(0.16) TCGA-AA-3984-01 19 52888224 52888224 A G ZNF880 Missense_Mutation p.Y464C 0.25 deleterious(0.02) possibly_damaging(0.793) TCGA-AA-3984-01 19 52888453 52888453 A G ZNF880 Silent p.R540R 0.21 TCGA-AA-3984-01 19 52918940 52918940 C T ZNF528 Nonsense_Mutation p.R279* 0.22 TCGA-AA-3984-01 19 52918971 52918971 G T ZNF528 Missense_Mutation p.R289I 0.20 tolerated(0.12) benign(0.416) TCGA-AA-3984-01 19 52942312 52942312 G A ZNF534 Silent p.R546R 0.26 TCGA-AA-3984-01 19 53058233 53058233 C T ZNF808 Silent p.F688F 0.11 TCGA-AA-3984-01 19 53116387 53116387 C T ZNF83 Silent p.A477A 0.08 TCGA-AA-3984-01 19 53117315 53117315 C T ZNF83 Missense_Mutation p.R168H 0.35 tolerated(0.17) probably_damaging(0.996) TCGA-AA-3984-01 19 53117915 53117915 T G ZNF83 5'UTR 0.32 TCGA-AA-3984-01 19 53208331 53208331 G A ZNF611 Silent p.F659F 0.12 TCGA-AA-3984-01 19 53208392 53208392 T G ZNF611 Missense_Mutation p.Y639S 0.11 tolerated(0.8) benign(0.428) TCGA-AA-3984-01 19 53209139 53209139 C A ZNF611 Missense_Mutation p.R390I 0.30 tolerated(0.18) probably_damaging(0.998) TCGA-AA-3984-01 19 53209167 53209167 G A ZNF611 Missense_Mutation p.R381W 0.12 tolerated(0.15) possibly_damaging(0.802) TCGA-AA-3984-01 19 53209720 53209720 A C ZNF611 Missense_Mutation p.I196M 0.27 deleterious(0.03) possibly_damaging(0.642) TCGA-AA-3984-01 19 53269918 53269918 C A ZNF600 Missense_Mutation p.G364V 0.19 deleterious(0) possibly_damaging(0.602) TCGA-AA-3984-01 19 53270128 53270128 C A ZNF600 Missense_Mutation p.R294I 0.20 tolerated(0.11) benign(0.006) TCGA-AA-3984-01 19 53303703 53303703 T C ZNF28 Silent p.K465K 0.11 TCGA-AA-3984-01 19 53304746 53304746 C A ZNF28 Nonsense_Mutation p.E118* 0.35 TCGA-AA-3984-01 19 53344184 53344184 C T ZNF468 Missense_Mutation p.A455T 0.28 tolerated(1) benign(0.001) TCGA-AA-3984-01 19 53345169 53345169 A G ZNF468 Silent p.H126H 0.09 TCGA-AA-3984-01 19 53453247 53453247 T G ZNF816 Missense_Mutation p.K594T 0.29 deleterious(0) possibly_damaging(0.74) TCGA-AA-3984-01 19 53454568 53454568 C T ZNF816 Missense_Mutation p.D154N 0.31 tolerated(1) possibly_damaging(0.855) TCGA-AA-3984-01 19 53473780 53473780 A G ZNF702P RNA 0.14 TCGA-AA-3984-01 19 53741353 53741353 C A ZNF677 Missense_Mutation p.E209D 0.26 tolerated(0.09) benign(0.171) TCGA-AA-3984-01 19 53884109 53884109 G T ZNF525 Missense_Mutation p.D93Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 53911092 53911092 A G ZNF765 Missense_Mutation p.H95R 0.23 deleterious(0.04) benign(0.033) TCGA-AA-3984-01 19 53913985 53913985 G A ZNF765 3'UTR 0.18 TCGA-AA-3984-01 19 53952800 53952800 C A ZNF761 RNA 0.29 TCGA-AA-3984-01 19 53996187 53996187 G T ZNF813 3'UTR 0.53 TCGA-AA-3984-01 19 54194211 54194211 C T MIR520A RNA 0.07 TCGA-AA-3984-01 19 54197717 54197717 G A MIR526B RNA 0.25 TCGA-AA-3984-01 19 54238203 54238203 C T MIR518D RNA 0.12 TCGA-AA-3984-01 19 54377831 54377831 T C MYADM 3'UTR 0.30 TCGA-AA-3984-01 19 54401296 54401296 G A PRKCG Silent p.A341A 0.29 TCGA-AA-3984-01 19 54710171 54710171 G A RPS9 Missense_Mutation p.R83H 0.32 tolerated(0.08) benign(0.136) TCGA-AA-3984-01 19 54758726 54758726 T C LILRB5 Missense_Mutation p.H376R 0.26 deleterious(0.01) benign(0.008) TCGA-AA-3984-01 19 54784146 54784146 G T LILRB2 Missense_Mutation p.L15M 0.30 deleterious(0.02) probably_damaging(0.928) TCGA-AA-3984-01 19 54967421 54967421 G T LENG8 Missense_Mutation p.R434I 0.08 tolerated(0.09) possibly_damaging(0.809) TCGA-AA-3984-01 19 54967844 54967844 G A LENG8 Missense_Mutation p.R492Q 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-AA-3984-01 19 55054763 55054763 G T KIR3DX1 3'UTR 0.21 TCGA-AA-3984-01 19 55143061 55143061 T C LILRB1 Missense_Mutation p.Y61H 0.35 tolerated(0.52) benign(0.017) TCGA-AA-3984-01 19 55324746 55324746 C T KIR2DL4 Intron 0.11 TCGA-AA-3984-01 19 55344171 55344171 G A KIR3DL1 3'Flank 0.35 TCGA-AA-3984-01 19 55526171 55526171 C T GP6 Missense_Mutation p.R381Q 0.24 tolerated_low_confidence(0.15) benign(0.056) TCGA-AA-3984-01 19 56024384 56024384 A C SSC5D Missense_Mutation p.K931T 0.35 benign(0.035) TCGA-AA-3984-01 19 56156226 56156226 G A ZNF581 Missense_Mutation p.E97K 0.29 tolerated(0.35) benign(0.19) TCGA-AA-3984-01 19 56226540 56226540 G A NLRP9 Silent p.V794V 0.27 TCGA-AA-3984-01 19 56244308 56244308 C A NLRP9 Nonsense_Mutation p.G297* 0.32 TCGA-AA-3984-01 19 56297091 56297091 G T NLRP11 Nonsense_Mutation p.S1001* 0.27 TCGA-AA-3984-01 19 56320903 56320903 T C NLRP11 Missense_Mutation p.D358G 0.23 deleterious(0.01) probably_damaging(0.965) TCGA-AA-3984-01 19 56321041 56321041 A G NLRP11 Missense_Mutation p.F312S 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 56369356 56369356 G A NLRP4 Silent p.T199T 0.09 TCGA-AA-3984-01 19 56423175 56423175 C A NLRP13 Nonsense_Mutation p.E670* 0.36 TCGA-AA-3984-01 19 56482062 56482062 C T NLRP8 Missense_Mutation p.S845L 0.12 tolerated(0.08) benign(0.001) TCGA-AA-3984-01 19 56515189 56515189 C T NLRP5 Missense_Mutation p.S57L 0.14 tolerated(0.87) benign(0) TCGA-AA-3984-01 19 56538774 56538774 G A NLRP5 Missense_Mutation p.R392H 0.26 tolerated(0.79) benign(0.003) TCGA-AA-3984-01 19 5654190 5654190 C T SAFB Nonsense_Mutation p.R549* 0.24 TCGA-AA-3984-01 19 5678615 5678615 C T C19orf70 Missense_Mutation p.A102T 0.27 deleterious(0.03) benign(0.084) TCGA-AA-3984-01 19 56895550 56895550 T C ZNF582 Silent p.V412V 0.09 TCGA-AA-3984-01 19 56952782 56952782 T C ZNF667 Missense_Mutation p.T528A 0.35 tolerated(0.52) benign(0.197) TCGA-AA-3984-01 19 57035890 57035890 A G ZNF471 Missense_Mutation p.T152A 0.26 tolerated(0.42) benign(0.011) TCGA-AA-3984-01 19 57036802 57036802 G A ZNF471 Missense_Mutation p.E456K 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3984-01 19 57036804 57036804 G T ZNF471 Missense_Mutation p.E456D 0.27 deleterious(0.02) probably_damaging(0.96) TCGA-AA-3984-01 19 57036918 57036918 A G ZNF471 Silent p.K494K 0.30 TCGA-AA-3984-01 19 57065210 57065210 T C ZFP28 Silent p.G352G 0.24 TCGA-AA-3984-01 19 57065473 57065473 G T ZFP28 Missense_Mutation p.R440I 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 57134633 57134633 C T ZNF71 3'UTR 0.46 TCGA-AA-3984-01 19 57286541 57286541 G T ZIM2 Missense_Mutation p.L367I 0.26 tolerated(0.33) possibly_damaging(0.555) TCGA-AA-3984-01 19 57286694 57286694 T C ZIM2 Missense_Mutation p.T316A 0.29 tolerated(0.34) benign(0.115) TCGA-AA-3984-01 19 57327195 57327195 C T PEG3 Missense_Mutation p.R872Q 0.37 tolerated(0.69) benign(0.003) TCGA-AA-3984-01 19 57640117 57640117 C T USP29 Missense_Mutation p.A25V 0.29 tolerated(0.16) benign(0.036) TCGA-AA-3984-01 19 57642885 57642885 C T USP29 3'UTR 0.34 TCGA-AA-3984-01 19 57647184 57647184 T G ZIM3 Missense_Mutation p.K174T 0.23 deleterious(0) possibly_damaging(0.766) TCGA-AA-3984-01 19 57716786 57716786 A G ZNF264 Missense_Mutation p.E61G 0.11 deleterious(0) possibly_damaging(0.821) TCGA-AA-3984-01 19 57746628 57746628 T G AURKC Missense_Mutation p.F258C 0.10 deleterious(0.03) possibly_damaging(0.509) TCGA-AA-3984-01 19 57773934 57773934 C A CTC-444N24.8 RNA 0.15 TCGA-AA-3984-01 19 57863043 57863043 C T ZNF304 Missense_Mutation p.A4V 0.23 tolerated(0.1) benign(0.045) TCGA-AA-3984-01 19 57932432 57932432 G A ZNF17 Silent p.R524R 0.38 TCGA-AA-3984-01 19 57932749 57932749 G T ZNF17 Missense_Mutation p.R630I 0.24 tolerated(0.16) benign(0.31) TCGA-AA-3984-01 19 58018736 58018736 C T ZNF773 Missense_Mutation p.R425C 0.31 deleterious(0.01) possibly_damaging(0.843) TCGA-AA-3984-01 19 58058953 58058953 C T ZNF550 Missense_Mutation p.R179Q 0.06 tolerated(0.41) benign(0.027) TCGA-AA-3984-01 19 58067768 58067768 C T ZNF550 5'Flank 0.22 TCGA-AA-3984-01 19 58118429 58118429 T G ZNF530 Silent p.V512V 0.27 TCGA-AA-3984-01 19 58187763 58187763 A G ZSCAN4 Missense_Mutation p.I84V 0.29 deleterious(0.03) benign(0.416) TCGA-AA-3984-01 19 58198865 58198865 C T ZNF551 Nonsense_Mutation p.R408* 0.15 TCGA-AA-3984-01 19 58213048 58213048 G A ZNF154 Silent p.S423S 0.25 TCGA-AA-3984-01 19 58265928 58265928 G A ZNF776 Missense_Mutation p.R477Q 0.28 tolerated(0.91) benign(0.069) TCGA-AA-3984-01 19 58319776 58319776 G A ZNF552 Missense_Mutation p.H286Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 19 58384831 58384831 C T ZNF814 Missense_Mutation p.E643K 0.29 tolerated(0.95) benign(0.147) TCGA-AA-3984-01 19 58437969 58437969 C T ZNF418 Missense_Mutation p.R527Q 0.17 tolerated(0.66) benign(0.013) TCGA-AA-3984-01 19 58438698 58438698 C A ZNF418 Missense_Mutation p.R284I 0.10 deleterious(0) probably_damaging(0.985) TCGA-AA-3984-01 19 58439147 58439147 C A ZNF418 Missense_Mutation p.E134D 0.28 tolerated(0.07) possibly_damaging(0.899) TCGA-AA-3984-01 19 58491206 58491206 C A ZNF606 Missense_Mutation p.R281I 0.24 deleterious(0) benign(0.091) TCGA-AA-3984-01 19 58868836 58868836 G A ZNF497 Missense_Mutation p.R56W 0.26 deleterious(0.01) benign(0.199) TCGA-AA-3984-01 19 58905932 58905932 C T RPS5 Silent p.C172C 0.33 TCGA-AA-3984-01 19 58944929 58944929 C T ZNF132 Missense_Mutation p.E628K 0.20 tolerated(0.21) probably_damaging(0.93) TCGA-AA-3984-01 19 58945966 58945966 T G ZNF132 Missense_Mutation p.K282T 0.39 deleterious(0.02) benign(0.058) TCGA-AA-3984-01 19 58989528 58989528 T C ZNF446 Missense_Mutation p.F203L 0.22 tolerated(0.3) benign(0.059) TCGA-AA-3984-01 19 59021320 59021320 C A SLC27A5 Missense_Mutation p.K317N 0.21 tolerated(0.48) benign(0.01) TCGA-AA-3984-01 19 59022959 59022959 G A SLC27A5 Missense_Mutation p.R122W 0.31 deleterious(0.03) benign(0.037) TCGA-AA-3984-01 19 6016273 6016273 G A RFX2 Silent p.L203L 0.16 TCGA-AA-3984-01 19 6183180 6183180 G A ACSBG2 Missense_Mutation p.E407K 0.23 tolerated(0.25) probably_damaging(0.945) TCGA-AA-3984-01 19 6416504 6416504 G A KHSRP Silent p.I495I 0.22 TCGA-AA-3984-01 19 6665155 6665155 G A TNFSF14 Missense_Mutation p.R169C 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 19 6678419 6678419 C T C3 Missense_Mutation p.E1560K 0.27 tolerated(0.84) benign(0.055) TCGA-AA-3984-01 19 6836549 6836549 G A VAV1 Silent p.T628T 0.23 TCGA-AA-3984-01 19 7030612 7030612 A G MBD3L5 5'UTR 0.46 TCGA-AA-3984-01 19 7081448 7081448 C A ZNF557 Missense_Mutation p.L109I 0.10 tolerated(0.19) possibly_damaging(0.801) TCGA-AA-3984-01 19 7142885 7142885 G A INSR Silent p.D828D 0.25 TCGA-AA-3984-01 19 7625590 7625590 C A PNPLA6 Silent p.V1262V 0.38 TCGA-AA-3984-01 19 7676817 7676817 G A CAMSAP3 Missense_Mutation p.D507N 0.35 tolerated(0.37) probably_damaging(0.995) TCGA-AA-3984-01 19 7806309 7806309 C T CD209 3'UTR 0.40 TCGA-AA-3984-01 19 7806398 7806398 A C CD209 3'UTR 0.20 TCGA-AA-3984-01 19 8152995 8152995 C T FBN3 Missense_Mutation p.E2149K 0.27 deleterious(0.02) benign(0.056) TCGA-AA-3984-01 19 8188866 8188866 G A FBN3 Nonsense_Mutation p.R920* 0.12 TCGA-AA-3984-01 19 831930 831930 C T AZU1 3'UTR 0.33 TCGA-AA-3984-01 19 8553661 8553661 G A HNRNPM Missense_Mutation p.E706K 0.08 tolerated(0.26) possibly_damaging(0.845) TCGA-AA-3984-01 19 8564055 8564055 G A PRAM1 Missense_Mutation p.P213S 0.24 deleterious(0.04) probably_damaging(1) TCGA-AA-3984-01 19 8807854 8807854 G A ACTL9 Missense_Mutation p.R400W 0.19 deleterious(0) probably_damaging(0.984) TCGA-AA-3984-01 19 8953961 8953961 A C MBD3L1 3'UTR 0.41 TCGA-AA-3984-01 19 9067923 9067923 G T MUC16 Missense_Mutation p.T6508N 0.24 unknown(0) TCGA-AA-3984-01 19 9072679 9072679 C T MUC16 Missense_Mutation p.A4923T 0.08 unknown(0) TCGA-AA-3984-01 19 9087420 9087420 C T MUC16 Silent p.L1465L 0.09 TCGA-AA-3984-01 19 9298346 9298346 T G OR7D2 3'UTR 0.10 TCGA-AA-3984-01 19 9298418 9298418 T C OR7D2 3'UTR 0.39 TCGA-AA-3984-01 19 9362304 9362304 C A OR7E24 Missense_Mutation p.F195L 0.11 deleterious(0.01) possibly_damaging(0.651) TCGA-AA-3984-01 19 9407378 9407378 A C ZNF699 Missense_Mutation p.F234L 0.28 tolerated(0.64) possibly_damaging(0.629) TCGA-AA-3984-01 19 9524570 9524570 C T ZNF266 Missense_Mutation p.R344Q 0.32 tolerated(0.12) probably_damaging(0.985) TCGA-AA-3984-01 19 9639822 9639822 C T ZNF426 Missense_Mutation p.R300Q 0.20 tolerated(0.56) benign(0.014) TCGA-AA-3984-01 19 9677130 9677130 C T ZNF121 Missense_Mutation p.R220Q 0.35 tolerated(0.29) benign(0.297) TCGA-AA-3984-01 19 9677364 9677364 T G ZNF121 Missense_Mutation p.K142T 0.30 deleterious(0.01) probably_damaging(0.955) TCGA-AA-3984-01 1 100127901 100127901 C A PALMD Silent p.I24I 0.19 TCGA-AA-3984-01 1 100327973 100327973 G T AGL Nonsense_Mutation p.E152* 0.30 TCGA-AA-3984-01 1 10042628 10042628 C T NMNAT1 Missense_Mutation p.R237C 0.29 deleterious(0) probably_damaging(0.91) TCGA-AA-3984-01 1 100928221 100928221 G A CDC14A Missense_Mutation p.A208T 0.25 deleterious(0.03) benign(0.271) TCGA-AA-3984-01 1 101006598 101006598 A G GPR88 3'UTR 0.11 TCGA-AA-3984-01 1 101197032 101197032 G A VCAM1 Missense_Mutation p.E495K 0.28 deleterious(0.03) probably_damaging(1) TCGA-AA-3984-01 1 101203826 101203826 A C VCAM1 Missense_Mutation p.K736T 0.33 deleterious(0) probably_damaging(0.938) TCGA-AA-3984-01 1 101343127 101343127 G T EXTL2 Missense_Mutation p.S113Y 0.09 deleterious(0.04) probably_damaging(0.929) TCGA-AA-3984-01 1 101706317 101706317 C A S1PR1 3'UTR 0.09 TCGA-AA-3984-01 1 102269934 102269934 G T OLFM3 Missense_Mutation p.P413T 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 102290603 102290603 G A OLFM3 Missense_Mutation p.R191C 0.25 deleterious(0) possibly_damaging(0.65) TCGA-AA-3984-01 1 102290763 102290763 G A OLFM3 Silent p.I137I 0.13 TCGA-AA-3984-01 1 103356059 103356059 C T COL11A1 Missense_Mutation p.G1435E 0.23 unknown(0) TCGA-AA-3984-01 1 103573797 103573797 C T COL11A1 5'UTR 0.14 TCGA-AA-3984-01 1 10363245 10363245 G A KIF1B Intron 0.17 TCGA-AA-3984-01 1 104114189 104114189 A C AMY2B 5'UTR 0.21 TCGA-AA-3984-01 1 10715763 10715763 G A CASZ1 Silent p.S536S 0.08 TCGA-AA-3984-01 1 107600660 107600660 A C PRMT6 3'UTR 0.30 TCGA-AA-3984-01 1 107867256 107867256 C T NTNG1 Missense_Mutation p.T200M 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-AA-3984-01 1 108145748 108145748 C T VAV3 Missense_Mutation p.E685K 0.15 tolerated(0.65) probably_damaging(0.921) TCGA-AA-3984-01 1 108291646 108291646 A C VAV3 Missense_Mutation p.F482L 0.31 tolerated(0.88) benign(0.008) TCGA-AA-3984-01 1 108679411 108679411 C T SLC25A24 Missense_Mutation p.R433Q 0.33 tolerated(0.77) benign(0.015) TCGA-AA-3984-01 1 108681678 108681678 A G SLC25A24 Splice_Site p.X417_splice 0.40 TCGA-AA-3984-01 1 109241957 109241957 G A PRPF38B Missense_Mutation p.R319Q 0.10 tolerated(0.07) unknown(0) TCGA-AA-3984-01 1 109242103 109242103 C T PRPF38B Missense_Mutation p.R368C 0.12 deleterious(0) unknown(0) TCGA-AA-3984-01 1 109358786 109358786 C T AKNAD1 3'UTR 0.11 TCGA-AA-3984-01 1 109795406 109795406 G A CELSR2 Missense_Mutation p.R902H 0.20 deleterious(0.01) probably_damaging(0.946) TCGA-AA-3984-01 1 109824633 109824633 G A PSRC1 Nonsense_Mutation p.R43* 0.16 TCGA-AA-3984-01 1 109839517 109839517 G T MYBPHL Silent p.V206V 0.10 TCGA-AA-3984-01 1 110020565 110020565 C A SYPL2 Nonsense_Mutation p.C194* 0.28 TCGA-AA-3984-01 1 110085828 110085828 G A GPR61 Missense_Mutation p.A62T 0.30 deleterious(0) probably_damaging(0.937) TCGA-AA-3984-01 1 110149038 110149038 C T GNAT2 Missense_Mutation p.R161Q 0.26 deleterious(0.01) benign(0.111) TCGA-AA-3984-01 1 110152685 110152685 C T GNAT2 Missense_Mutation p.D94N 0.11 tolerated(0.13) benign(0.003) TCGA-AA-3984-01 1 110213993 110213993 C A GSTM2 Missense_Mutation p.L149I 0.09 deleterious(0) benign(0.062) TCGA-AA-3984-01 1 110594358 110594358 A C STRIP1 Missense_Mutation p.K705N 0.31 deleterious(0) benign(0.354) TCGA-AA-3984-01 1 111060912 111060912 G A KCNA10 Silent p.I166I 0.10 TCGA-AA-3984-01 1 111145852 111145852 A C KCNA2 3'UTR 0.33 TCGA-AA-3984-01 1 11136909 11136909 G A EXOSC10 Missense_Mutation p.T659M 0.34 deleterious(0) probably_damaging(0.97) TCGA-AA-3984-01 1 11174456 11174456 G A MTOR Silent p.L2407L 0.13 TCGA-AA-3984-01 1 111770292 111770292 G A CHI3L2 5'UTR 0.31 TCGA-AA-3984-01 1 112003767 112003767 G A ATP5F1 3'UTR 0.27 TCGA-AA-3984-01 1 11273554 11273554 G A MTOR Missense_Mutation p.L1063F 0.30 deleterious(0.02) probably_damaging(0.942) TCGA-AA-3984-01 1 112999040 112999040 C T CTTNBP2NL Missense_Mutation p.S309F 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 1 113460045 113460045 C T SLC16A1 Missense_Mutation p.R328Q 0.27 deleterious(0.02) benign(0.298) TCGA-AA-3984-01 1 114184534 114184534 C T MAGI3 Silent p.G454G 0.15 TCGA-AA-3984-01 1 114225812 114225812 C A MAGI3 Missense_Mutation p.L1208I 0.10 tolerated_low_confidence(0.14) benign(0.148) TCGA-AA-3984-01 1 114309758 114309758 C A RSBN1 Missense_Mutation p.R633I 0.11 deleterious(0) probably_damaging(0.952) TCGA-AA-3984-01 1 114483379 114483379 G A HIPK1 Missense_Mutation p.R125Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 1 114512754 114512754 G A HIPK1 Missense_Mutation p.R983H 0.09 tolerated(0.08) probably_damaging(0.962) TCGA-AA-3984-01 1 114523080 114523080 G A OLFML3 Missense_Mutation p.D81N 0.10 deleterious(0.01) possibly_damaging(0.575) TCGA-AA-3984-01 1 114524297 114524297 G A OLFML3 Missense_Mutation p.R376H 0.31 tolerated(0.34) probably_damaging(0.928) TCGA-AA-3984-01 1 115164639 115164639 C A DENND2C Missense_Mutation p.K368N 0.09 deleterious(0.02) possibly_damaging(0.894) TCGA-AA-3984-01 1 115168029 115168029 T G DENND2C Missense_Mutation p.N193H 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-AA-3984-01 1 115168197 115168197 A C DENND2C Missense_Mutation p.S137A 0.31 tolerated(0.57) benign(0.002) TCGA-AA-3984-01 1 115215796 115215796 C T AMPD1 Missense_Mutation p.R761H 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 115229521 115229521 A C AMPD1 Missense_Mutation p.F109V 0.12 tolerated(0.08) benign(0.028) TCGA-AA-3984-01 1 115231344 115231344 C T AMPD1 Missense_Mutation p.R51H 0.13 deleterious(0) probably_damaging(0.953) TCGA-AA-3984-01 1 115267948 115267948 G T CSDE1 Missense_Mutation p.F595L 0.25 tolerated(0.15) benign(0.001) TCGA-AA-3984-01 1 11595163 11595163 G A PTCHD2 Missense_Mutation p.V1211M 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 116243689 116243689 A C CASQ2 3'UTR 0.40 TCGA-AA-3984-01 1 116569517 116569517 C T SLC22A15 Missense_Mutation p.S201L 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 116670831 116670831 G A MAB21L3 Silent p.E242E 0.28 TCGA-AA-3984-01 1 116948493 116948493 T C ATP1A1 3'Flank 0.28 TCGA-AA-3984-01 1 117560946 117560946 G A CD101 Missense_Mutation p.R594Q 0.26 tolerated(0.41) benign(0.007) TCGA-AA-3984-01 1 117699422 117699422 C T VTCN1 Silent p.K73K 0.30 TCGA-AA-3984-01 1 118166767 118166767 G A FAM46C 3'UTR 0.33 TCGA-AA-3984-01 1 118167011 118167011 C T FAM46C 3'UTR 0.25 TCGA-AA-3984-01 1 118168879 118168879 C T FAM46C 3'UTR 0.29 TCGA-AA-3984-01 1 118170771 118170771 G T FAM46C 3'UTR 0.18 TCGA-AA-3984-01 1 118499758 118499758 G A WDR3 Missense_Mutation p.E841K 0.21 tolerated(0.75) benign(0.129) TCGA-AA-3984-01 1 118516092 118516092 G T SPAG17 Missense_Mutation p.H2033N 0.29 tolerated(0.26) benign(0.016) TCGA-AA-3984-01 1 118581924 118581924 G T SPAG17 Missense_Mutation p.L1104I 0.12 tolerated(0.49) benign(0.006) TCGA-AA-3984-01 1 11917538 11917538 A C NPPB 3'UTR 0.44 TCGA-AA-3984-01 1 119936474 119936474 C T HAO2 3'UTR 0.09 TCGA-AA-3984-01 1 120056974 120056974 C T HSD3B1 Silent p.F276F 0.35 TCGA-AA-3984-01 1 120471631 120471631 T C NOTCH2 Missense_Mutation p.D1287G 0.14 tolerated(0.09) benign(0.063) TCGA-AA-3984-01 1 12439580 12439580 G A VPS13D Missense_Mutation p.R3707Q 0.12 possibly_damaging(0.721) TCGA-AA-3984-01 1 12460245 12460245 A C VPS13D Missense_Mutation p.N3881T 0.10 probably_damaging(0.981) TCGA-AA-3984-01 1 1267806 1267806 G T TAS1R3 Missense_Mutation p.A299S 0.24 deleterious(0.03) possibly_damaging(0.832) TCGA-AA-3984-01 1 12785272 12785272 A G AADACL3 Missense_Mutation p.D121G 0.32 tolerated(0.15) benign(0.328) TCGA-AA-3984-01 1 12855608 12855608 G T PRAMEF1 Missense_Mutation p.E296D 0.29 tolerated(0.48) possibly_damaging(0.513) TCGA-AA-3984-01 1 12907644 12907644 G A HNRNPCL1 Missense_Mutation p.R167W 0.19 tolerated(0.12) benign(0.001) TCGA-AA-3984-01 1 12954580 12954580 G A PRAMEF10 Missense_Mutation p.R235C 0.07 deleterious(0.02) benign(0.031) TCGA-AA-3984-01 1 12979861 12979861 G T PRAMEF7 Missense_Mutation p.Q351H 0.17 probably_damaging(0.916) TCGA-AA-3984-01 1 1341253 1341253 C T MRPL20 Missense_Mutation p.R71Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 14059310 14059310 A C PRDM2 Missense_Mutation p.K55T 0.27 probably_damaging(0.999) TCGA-AA-3984-01 1 143912428 143912428 G T FAM72D 5'UTR 0.19 TCGA-AA-3984-01 1 144994638 144994638 G A PDE4DIP Missense_Mutation p.R32C 0.06 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 1 145074950 145074950 G A PDE4DIP 3'UTR 0.09 TCGA-AA-3984-01 1 145074991 145074991 G C PDE4DIP Missense_Mutation p.C101W 0.09 deleterious_low_confidence(0.01) benign(0.002) TCGA-AA-3984-01 1 145525080 145525080 C T ITGA10 Silent p.F5F 0.12 TCGA-AA-3984-01 1 145537442 145537442 C T ITGA10 Nonsense_Mutation p.R818* 0.19 TCGA-AA-3984-01 1 145560912 145560912 G T ANKRD35 Missense_Mutation p.D257Y 0.28 tolerated(0.09) benign(0.005) TCGA-AA-3984-01 1 147091769 147091769 G A BCL9 Missense_Mutation p.R603Q 0.10 tolerated(0.08) probably_damaging(0.945) TCGA-AA-3984-01 1 147230567 147230567 G A GJA5 Silent p.S260S 0.28 TCGA-AA-3984-01 1 150193054 150193054 C T ANP32E Missense_Mutation p.G249D 0.11 tolerated(0.38) unknown(0) TCGA-AA-3984-01 1 150235807 150235807 C A CA14 Missense_Mutation p.S277Y 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 150483232 150483232 T C ECM1 Intron 0.29 TCGA-AA-3984-01 1 150530584 150530584 C T ADAMTSL4 Missense_Mutation p.R781C 0.30 deleterious(0) probably_damaging(0.973) TCGA-AA-3984-01 1 150531596 150531596 G A ADAMTSL4 Silent p.G906G 0.34 TCGA-AA-3984-01 1 150917741 150917742 - G SETDB1 Intron 0.12 TCGA-AA-3984-01 1 150935127 150935127 C T SETDB1 Missense_Mutation p.R1075C 0.13 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-AA-3984-01 1 150974652 150974652 G T FAM63A Missense_Mutation p.L196I 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 151141578 151141578 A G SCNM1 3'UTR 0.22 TCGA-AA-3984-01 1 151993765 151993765 C T NBPF18P RNA 0.30 TCGA-AA-3984-01 1 152080830 152080830 G T TCHH Missense_Mutation p.F1621L 0.30 unknown(0) TCGA-AA-3984-01 1 152185535 152185535 G A HRNR 3'UTR 0.19 TCGA-AA-3984-01 1 152191816 152191816 C T HRNR Silent p.S763S 0.28 TCGA-AA-3984-01 1 152285839 152285839 G A FLG Missense_Mutation p.A508V 0.26 benign(0.317) TCGA-AA-3984-01 1 152325052 152325052 T C FLG2 Missense_Mutation p.Y1737C 0.10 possibly_damaging(0.759) TCGA-AA-3984-01 1 152326083 152326083 T C FLG2 Silent p.G1393G 0.29 TCGA-AA-3984-01 1 152327202 152327202 T C FLG2 Silent p.G1020G 0.18 TCGA-AA-3984-01 1 152329700 152329700 G T FLG2 Missense_Mutation p.H188N 0.19 unknown(0) TCGA-AA-3984-01 1 152659453 152659453 C A LCE2B Missense_Mutation p.S45Y 0.11 tolerated_low_confidence(0.07) unknown(0) TCGA-AA-3984-01 1 152671530 152671530 C T LCE2A Silent p.C51C 0.24 TCGA-AA-3984-01 1 152732430 152732430 C T KPRP Silent p.C122C 0.33 TCGA-AA-3984-01 1 152733223 152733223 C T KPRP Missense_Mutation p.R387C 0.32 tolerated_low_confidence(0.07) benign(0.076) TCGA-AA-3984-01 1 152749024 152749024 C T LCE1F Silent p.C59C 0.32 TCGA-AA-3984-01 1 152857138 152857138 C T SMCP Silent p.V80V 0.07 TCGA-AA-3984-01 1 152883038 152883038 C A IVL Silent p.L255L 0.24 TCGA-AA-3984-01 1 152884351 152884351 C A IVL 3'UTR 0.25 TCGA-AA-3984-01 1 152944791 152944791 C T SPRR4 3'UTR 0.23 TCGA-AA-3984-01 1 153431376 153431376 C A S100A7 Missense_Mutation p.E38D 0.23 tolerated(0.07) benign(0.061) TCGA-AA-3984-01 1 153433100 153433100 C T S100A7 5'UTR 0.25 TCGA-AA-3984-01 1 153947269 153947269 G A JTB Silent p.F109F 0.16 TCGA-AA-3984-01 1 154163745 154163745 T C TPM3 Missense_Mutation p.T54A 0.30 tolerated(0.18) possibly_damaging(0.826) TCGA-AA-3984-01 1 154164607 154164607 T C TPM3 5'UTR 0.35 TCGA-AA-3984-01 1 154519915 154519915 G A TDRD10 Missense_Mutation p.R328Q 0.10 tolerated(0.6) benign(0.009) TCGA-AA-3984-01 1 154542794 154542794 C T CHRNB2 Missense_Mutation p.R106W 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 155005603 155005603 C T DCST2 Missense_Mutation p.E136K 0.32 tolerated(0.05) benign(0.09) TCGA-AA-3984-01 1 155013001 155013001 C T DCST1 Silent p.I144I 0.32 TCGA-AA-3984-01 1 155041445 155041445 C T EFNA4 Intron 0.10 TCGA-AA-3984-01 1 155313186 155313186 G A ASH1L Missense_Mutation p.R2738W 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3984-01 1 155317516 155317516 G A ASH1L Silent p.D2578D 0.41 TCGA-AA-3984-01 1 155736217 155736217 A G GON4L Missense_Mutation p.F1016S 0.30 tolerated(0.7) benign(0.001) TCGA-AA-3984-01 1 15578332 15578332 A G FHAD1 Missense_Mutation p.T18A 0.26 deleterious(0) probably_damaging(0.94) TCGA-AA-3984-01 1 155837885 155837885 T G SYT11 Missense_Mutation p.F55C 0.08 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 1 155838504 155838504 C A SYT11 Silent p.V261V 0.17 TCGA-AA-3984-01 1 155911539 155911539 C A RXFP4 Missense_Mutation p.F13L 0.36 tolerated(0.87) benign(0) TCGA-AA-3984-01 1 155917715 155917715 C A ARHGEF2 3'UTR 0.42 TCGA-AA-3984-01 1 155935126 155935126 C T ARHGEF2 Missense_Mutation p.R183Q 0.27 tolerated(0.13) probably_damaging(0.996) TCGA-AA-3984-01 1 156020899 156020899 A G UBQLN4 Splice_Site p.X160_splice 0.22 TCGA-AA-3984-01 1 156146732 156146732 A G SEMA4A Missense_Mutation p.T744A 0.23 tolerated(0.28) benign(0.005) TCGA-AA-3984-01 1 156247748 156247748 C A SMG5 Nonsense_Mutation p.E89* 0.27 TCGA-AA-3984-01 1 156510582 156510582 C T IQGAP3 Missense_Mutation p.R886Q 0.35 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 1 156761579 156761579 G A PRCC Missense_Mutation p.E392K 0.18 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 1 156894236 156894236 T C LRRC71 Missense_Mutation p.S111P 0.23 tolerated(0.21) possibly_damaging(0.762) TCGA-AA-3984-01 1 156899448 156899448 G T LRRC71 Missense_Mutation p.E389D 0.27 tolerated(0.14) probably_damaging(0.939) TCGA-AA-3984-01 1 156916474 156916474 G A ARHGEF11 Nonsense_Mutation p.R892* 0.29 TCGA-AA-3984-01 1 157504180 157504180 A C FCRL5 Intron 0.38 TCGA-AA-3984-01 1 157516962 157516962 G T FCRL5 Missense_Mutation p.F26L 0.11 tolerated(0.37) benign(0.026) TCGA-AA-3984-01 1 158261923 158261923 G T CD1C Missense_Mutation p.K126N 0.13 tolerated(0.32) benign(0.002) TCGA-AA-3984-01 1 158326709 158326709 A C CD1E 3'UTR 0.29 TCGA-AA-3984-01 1 158326775 158326775 C T CD1E 3'Flank 0.26 TCGA-AA-3984-01 1 158435521 158435521 C T OR10K1 Missense_Mutation p.T57I 0.29 tolerated(0.08) benign(0.009) TCGA-AA-3984-01 1 158450606 158450606 A C OR10R2 Missense_Mutation p.R313S 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 158576534 158576534 C A OR10Z1 Missense_Mutation p.F102L 0.27 deleterious(0.01) benign(0.187) TCGA-AA-3984-01 1 158607947 158607947 C A SPTA1 Missense_Mutation p.D1689Y 0.19 deleterious(0.01) possibly_damaging(0.646) TCGA-AA-3984-01 1 158626408 158626408 G A SPTA1 Silent p.L948L 0.22 TCGA-AA-3984-01 1 158653269 158653269 A C SPTA1 Missense_Mutation p.H94Q 0.30 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 1 158724816 158724816 C A OR6K6 Missense_Mutation p.L71I 0.28 tolerated(0.19) benign(0.141) TCGA-AA-3984-01 1 158735682 158735682 T C OR6N1 Missense_Mutation p.K264R 0.27 tolerated(0.14) benign(0.042) TCGA-AA-3984-01 1 158735966 158735966 A G OR6N1 Silent p.C169C 0.19 TCGA-AA-3984-01 1 158747185 158747185 T G OR6N2 Missense_Mutation p.M81L 0.29 tolerated(0.14) probably_damaging(0.989) TCGA-AA-3984-01 1 158811963 158811963 A C MNDA Missense_Mutation p.K7T 0.26 tolerated(0.1) possibly_damaging(0.447) TCGA-AA-3984-01 1 158988024 158988024 G A IFI16 Silent p.P185P 0.26 TCGA-AA-3984-01 1 159169585 159169585 A G CADM3 Missense_Mutation p.I367V 0.31 tolerated(0.21) possibly_damaging(0.872) TCGA-AA-3984-01 1 159283608 159283608 T C OR10J3 Missense_Mutation p.H281R 0.27 deleterious(0) benign(0.003) TCGA-AA-3984-01 1 159410062 159410062 A G OR10J1 Missense_Mutation p.T172A 0.25 tolerated(0.3) benign(0.008) TCGA-AA-3984-01 1 159889042 159889042 C T TAGLN2 Intron 0.32 TCGA-AA-3984-01 1 159912773 159912773 C T IGSF9 Missense_Mutation p.R76Q 0.12 deleterious(0.01) probably_damaging(0.917) TCGA-AA-3984-01 1 159921399 159921399 C A SLAMF9 3'UTR 0.21 TCGA-AA-3984-01 1 160106794 160106794 G A ATP1A2 Missense_Mutation p.R938H 0.24 deleterious(0) probably_damaging(0.933) TCGA-AA-3984-01 1 160151806 160151806 G A ATP1A4 Missense_Mutation p.R985Q 0.35 tolerated(0.13) benign(0.009) TCGA-AA-3984-01 1 160390200 160390200 G A VANGL2 Splice_Site p.X267_splice 0.18 TCGA-AA-3984-01 1 16056295 16056295 C A PLEKHM2 Missense_Mutation p.F693L 0.19 tolerated(0.12) benign(0.033) TCGA-AA-3984-01 1 160651134 160651134 C T CD48 Silent p.R170R 0.20 TCGA-AA-3984-01 1 160797562 160797562 G T LY9 Missense_Mutation p.D642Y 0.37 deleterious(0) benign(0.014) TCGA-AA-3984-01 1 160808795 160808795 C T CD244 Missense_Mutation p.A239T 0.15 tolerated(0.61) benign(0) TCGA-AA-3984-01 1 161017619 161017619 A G ARHGAP30 Silent p.S1064S 0.32 TCGA-AA-3984-01 1 161142024 161142024 G A B4GALT3 Missense_Mutation p.P301S 0.28 deleterious(0.03) benign(0.193) TCGA-AA-3984-01 1 161197453 161197453 G A TOMM40L Missense_Mutation p.D102N 0.23 deleterious(0.03) possibly_damaging(0.763) TCGA-AA-3984-01 1 161205694 161205694 G A NR1I3 Missense_Mutation p.R61C 0.11 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 1 161276207 161276207 G T MPZ Missense_Mutation p.L166I 0.10 tolerated(0.08) probably_damaging(0.987) TCGA-AA-3984-01 1 161993227 161993227 C T OLFML2B 5'UTR 0.27 TCGA-AA-3984-01 1 16343587 16343587 G A HSPB7 Silent p.I105I 0.26 TCGA-AA-3984-01 1 16354367 16354367 A G CLCNKA Missense_Mutation p.D278G 0.26 deleterious(0.03) benign(0.059) TCGA-AA-3984-01 1 16383527 16383527 C A CLCNKB 3'UTR 0.31 TCGA-AA-3984-01 1 1663782 1663782 G A SLC35E2 3'UTR 0.24 TCGA-AA-3984-01 1 166990995 166990995 C T MAEL Missense_Mutation p.S403F 0.25 tolerated(0.3) benign(0.429) TCGA-AA-3984-01 1 167064177 167064177 C T DUSP27 Nonsense_Mutation p.R31* 0.10 TCGA-AA-3984-01 1 167814993 167814993 C T ADCY10 Missense_Mutation p.E939K 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 167829051 167829051 C T ADCY10 Silent p.L630L 0.26 TCGA-AA-3984-01 1 167944116 167944116 A C DCAF6 Missense_Mutation p.K101Q 0.05 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 1 168037606 168037606 G A DCAF6 Missense_Mutation p.R899Q 0.30 deleterious(0) probably_damaging(0.973) TCGA-AA-3984-01 1 168073720 168073720 G A GPR161 Silent p.I143I 0.28 TCGA-AA-3984-01 1 169346071 169346071 G T BLZF1 Nonsense_Mutation p.E108* 0.33 TCGA-AA-3984-01 1 169346130 169346130 G T BLZF1 Missense_Mutation p.K127N 0.30 deleterious(0.01) benign(0.357) TCGA-AA-3984-01 1 169437363 169437363 C A SLC19A2 Nonsense_Mutation p.E451* 0.24 TCGA-AA-3984-01 1 169498989 169498989 T C F5 Missense_Mutation p.D1759G 0.25 tolerated(0.07) benign(0.059) TCGA-AA-3984-01 1 169500257 169500257 G A F5 Missense_Mutation p.R1659C 0.10 tolerated(0.07) possibly_damaging(0.886) TCGA-AA-3984-01 1 169505785 169505785 G T F5 Missense_Mutation p.L1644I 0.17 deleterious(0) probably_damaging(0.976) TCGA-AA-3984-01 1 169510070 169510070 G T F5 Missense_Mutation p.L1420I 0.28 tolerated_low_confidence(0.46) benign(0.124) TCGA-AA-3984-01 1 169511578 169511578 G T F5 Missense_Mutation p.S917Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-AA-3984-01 1 169512110 169512110 G A F5 Nonsense_Mutation p.R740* 0.11 TCGA-AA-3984-01 1 169581587 169581587 G T SELP Missense_Mutation p.H277N 0.13 deleterious(0.03) benign(0.044) TCGA-AA-3984-01 1 169699677 169699677 G T SELE Missense_Mutation p.S204Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 1 169857939 169857939 C A SCYL3 Nonsense_Mutation p.E15* 0.25 TCGA-AA-3984-01 1 170024459 170024459 C A KIFAP3 Nonsense_Mutation p.E51* 0.30 TCGA-AA-3984-01 1 170024464 170024464 C T KIFAP3 Missense_Mutation p.R49Q 0.26 deleterious(0.04) possibly_damaging(0.545) TCGA-AA-3984-01 1 170135806 170135806 A C METTL11B Missense_Mutation p.K165T 0.08 deleterious(0) benign(0.004) TCGA-AA-3984-01 1 17046532 17046532 C T ESPNP RNA 0.16 TCGA-AA-3984-01 1 170934393 170934393 A G MROH9 Silent p.K159K 0.38 TCGA-AA-3984-01 1 171033399 171033399 C A MROH9 Missense_Mutation p.P835H 0.23 deleterious(0.02) possibly_damaging(0.891) TCGA-AA-3984-01 1 171073087 171073087 G T FMO3 Missense_Mutation p.K98N 0.27 deleterious(0.02) probably_damaging(0.924) TCGA-AA-3984-01 1 171083302 171083302 C T FMO3 Missense_Mutation p.A328V 0.34 deleterious(0.02) probably_damaging(0.955) TCGA-AA-3984-01 1 171162582 171162582 T G FMO2 Missense_Mutation p.F81V 0.19 deleterious(0) possibly_damaging(0.527) TCGA-AA-3984-01 1 171178140 171178140 C A FMO2 3'UTR 0.32 TCGA-AA-3984-01 1 171300907 171300907 C T FMO4 Nonsense_Mutation p.R205* 0.08 TCGA-AA-3984-01 1 171303720 171303720 C A FMO4 Missense_Mutation p.S333Y 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-AA-3984-01 1 172222796 172222796 C T DNM3 Silent p.I581I 0.18 TCGA-AA-3984-01 1 172501872 172501872 G A SUCO 5'Flank 0.29 TCGA-AA-3984-01 1 17295694 17295694 C T CROCC Silent p.S1720S 0.10 TCGA-AA-3984-01 1 173019961 173019961 G A TNFSF18 Silent p.L48L 0.10 TCGA-AA-3984-01 1 173502932 173502932 A T SLC9C2 Missense_Mutation p.I660K 0.21 deleterious(0.01) possibly_damaging(0.717) TCGA-AA-3984-01 1 173570834 173570834 C T SLC9C2 Missense_Mutation p.E28K 0.25 tolerated(0.7) benign(0.003) TCGA-AA-3984-01 1 173873065 173873065 T C SERPINC1 Missense_Mutation p.I453V 0.08 tolerated(0.13) benign(0.01) TCGA-AA-3984-01 1 174669996 174669996 T A RABGAP1L Intron 0.32 TCGA-AA-3984-01 1 175086104 175086104 G A TNN Missense_Mutation p.D717N 0.26 tolerated(0.17) benign(0.077) TCGA-AA-3984-01 1 175097173 175097173 G A TNN Missense_Mutation p.M1017I 0.19 tolerated(0.22) benign(0) TCGA-AA-3984-01 1 175335178 175335178 C T TNR Missense_Mutation p.R717Q 0.29 deleterious(0.01) possibly_damaging(0.871) TCGA-AA-3984-01 1 176734959 176734959 A G PAPPA2 Missense_Mutation p.I1437V 0.30 tolerated(0.06) benign(0.002) TCGA-AA-3984-01 1 176992546 176992546 C T ASTN1 Missense_Mutation p.E478K 0.23 deleterious(0) benign(0.15) TCGA-AA-3984-01 1 176998864 176998864 G A ASTN1 Silent p.F342F 0.26 TCGA-AA-3984-01 1 17720546 17720546 G A PADI6 RNA 0.16 TCGA-AA-3984-01 1 177245370 177245370 G A BRINP2 Missense_Mutation p.R271H 0.32 deleterious(0.02) possibly_damaging(0.556) TCGA-AA-3984-01 1 177245422 177245422 C T BRINP2 Silent p.L288L 0.31 TCGA-AA-3984-01 1 177902749 177902749 C T SEC16B Missense_Mutation p.R865Q 0.32 tolerated(0.09) benign(0.018) TCGA-AA-3984-01 1 179081508 179081508 C T ABL2 Silent p.R529R 0.08 TCGA-AA-3984-01 1 179380291 179380291 G T AXDND1 Nonsense_Mutation p.E374* 0.33 TCGA-AA-3984-01 1 179886684 179886684 C A TOR1AIP1 Missense_Mutation p.F354L 0.39 tolerated(0.27) benign(0.01) TCGA-AA-3984-01 1 179965890 179965890 C T CEP350 Nonsense_Mutation p.R200* 0.35 TCGA-AA-3984-01 1 180065174 180065174 C T CEP350 Missense_Mutation p.A2974V 0.29 benign(0.034) TCGA-AA-3984-01 1 180158779 180158779 C A QSOX1 Missense_Mutation p.F370L 0.19 tolerated(0.67) benign(0.004) TCGA-AA-3984-01 1 180775219 180775219 C T XPR1 Nonsense_Mutation p.R157* 0.21 TCGA-AA-3984-01 1 181021615 181021615 C T MR1 Silent p.C283C 0.28 TCGA-AA-3984-01 1 181022719 181022719 T G MR1 Silent p.T297T 0.24 TCGA-AA-3984-01 1 18149669 18149669 G T ACTL8 Missense_Mutation p.D56Y 0.39 deleterious(0.01) probably_damaging(0.963) TCGA-AA-3984-01 1 181680192 181680192 G T CACNA1E Missense_Mutation p.W386C 0.40 deleterious(0.01) possibly_damaging(0.759) TCGA-AA-3984-01 1 181685255 181685255 C T CACNA1E Silent p.I435I 0.31 TCGA-AA-3984-01 1 181724522 181724522 G A CACNA1E Silent p.E1326E 0.43 TCGA-AA-3984-01 1 182827921 182827921 C T DHX9 Silent p.F318F 0.09 TCGA-AA-3984-01 1 183196722 183196722 C T LAMC2 Missense_Mutation p.P453L 0.31 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 1 183209656 183209656 T C LAMC2 Intron 0.43 TCGA-AA-3984-01 1 183510187 183510187 G A SMG7 Missense_Mutation p.R455Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 1 184680976 184680976 G A EDEM3 Silent p.F524F 0.10 TCGA-AA-3984-01 1 184777213 184777213 G A FAM129A Nonsense_Mutation p.Q444* 0.22 TCGA-AA-3984-01 1 185267184 185267184 T G IVNS1ABP Missense_Mutation p.K638Q 0.16 tolerated_low_confidence(0.18) benign(0.009) TCGA-AA-3984-01 1 185959472 185959472 C A HMCN1 Missense_Mutation p.L1092I 0.10 benign(0.243) TCGA-AA-3984-01 1 186008925 186008925 G T HMCN1 Nonsense_Mutation p.E2032* 0.15 TCGA-AA-3984-01 1 186059946 186059946 G A HMCN1 Missense_Mutation p.E3262K 0.31 probably_damaging(0.994) TCGA-AA-3984-01 1 186113737 186113737 G T HMCN1 Missense_Mutation p.R4723I 0.11 probably_damaging(0.99) TCGA-AA-3984-01 1 186269347 186269347 T C PRG4 Splice_Site p.X67_splice 0.08 TCGA-AA-3984-01 1 186289548 186289548 G A TPR Missense_Mutation p.S2155L 0.31 benign(0.009) TCGA-AA-3984-01 1 186315386 186315386 G A TPR Missense_Mutation p.R993C 0.29 possibly_damaging(0.689) TCGA-AA-3984-01 1 186413489 186413489 C G PDC Missense_Mutation p.K121N 0.09 deleterious(0) benign(0.019) TCGA-AA-3984-01 1 186646955 186646955 C A PTGS2 Missense_Mutation p.K155N 0.33 deleterious(0.05) benign(0.036) TCGA-AA-3984-01 1 186863312 186863312 A C PLA2G4A Missense_Mutation p.E116A 0.28 tolerated(0.09) benign(0.013) TCGA-AA-3984-01 1 186901918 186901918 T C PLA2G4A Silent p.G194G 0.27 TCGA-AA-3984-01 1 186908204 186908204 G A PLA2G4A Missense_Mutation p.E254K 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 1 186925433 186925433 A G PLA2G4A Silent p.T512T 0.10 TCGA-AA-3984-01 1 19166911 19166911 C T TAS1R2 Missense_Mutation p.A568T 0.22 tolerated(0.08) benign(0.018) TCGA-AA-3984-01 1 1922360 1922360 C T C1orf222 Silent p.E3E 0.23 TCGA-AA-3984-01 1 192335050 192335050 G A RGS21 Splice_Site p.X86_splice 0.33 TCGA-AA-3984-01 1 193150133 193150133 C A B3GALT2 Missense_Mutation p.R187I 0.24 deleterious(0) possibly_damaging(0.698) TCGA-AA-3984-01 1 19440525 19440525 G A UBR4 Nonsense_Mutation p.R3748* 0.11 TCGA-AA-3984-01 1 19472309 19472309 G A UBR4 Silent p.F2641F 0.33 TCGA-AA-3984-01 1 19486760 19486760 C T UBR4 Missense_Mutation p.A1808T 0.29 benign(0.067) TCGA-AA-3984-01 1 196461402 196461402 G T KCNT2 Missense_Mutation p.N55K 0.23 deleterious(0) benign(0.041) TCGA-AA-3984-01 1 196694406 196694406 C A CFH Missense_Mutation p.P618T 0.31 tolerated(0.09) probably_damaging(1) TCGA-AA-3984-01 1 196874393 196874393 G A CFHR4 Missense_Mutation p.G137R 0.28 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 1 197021872 197021872 C A F13B Missense_Mutation p.D483Y 0.10 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 1 197070154 197070154 G A ASPM Nonsense_Mutation p.R2743* 0.07 TCGA-AA-3984-01 1 197071386 197071386 C T ASPM Missense_Mutation p.R2332Q 0.13 tolerated(1) benign(0.007) TCGA-AA-3984-01 1 197073372 197073372 A G ASPM Missense_Mutation p.V1670A 0.27 tolerated(0.08) benign(0.033) TCGA-AA-3984-01 1 197099174 197099174 C A ASPM Nonsense_Mutation p.E834* 0.30 TCGA-AA-3984-01 1 197112464 197112464 C A ASPM Missense_Mutation p.L306F 0.26 tolerated(0.07) possibly_damaging(0.839) TCGA-AA-3984-01 1 197522177 197522177 C A DENND1B Missense_Mutation p.E405D 0.24 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 1 197889273 197889273 G A LHX9 Missense_Mutation p.G116S 0.12 tolerated(0.06) probably_damaging(0.95) TCGA-AA-3984-01 1 197898185 197898185 G T LHX9 Missense_Mutation p.E330D 0.09 tolerated(0.25) benign(0.084) TCGA-AA-3984-01 1 198721464 198721464 T G PTPRC Silent p.T1098T 0.34 TCGA-AA-3984-01 1 198721737 198721737 A G PTPRC Silent p.R1115R 0.20 TCGA-AA-3984-01 1 19952930 19952930 G T MINOS1-NBL1 Intron 0.26 TCGA-AA-3984-01 1 200378137 200378137 C T ZNF281 Missense_Mutation p.A233T 0.26 tolerated(0.19) benign(0.048) TCGA-AA-3984-01 1 200587403 200587403 T C KIF14 Missense_Mutation p.E150G 0.11 tolerated(0.37) benign(0) TCGA-AA-3984-01 1 200943152 200943152 C T KIF21B 3'UTR 0.10 TCGA-AA-3984-01 1 201052418 201052418 C T CACNA1S Missense_Mutation p.R422H 0.32 deleterious(0.01) benign(0.176) TCGA-AA-3984-01 1 201052448 201052448 C T CACNA1S Missense_Mutation p.R412Q 0.09 deleterious(0.03) probably_damaging(0.91) TCGA-AA-3984-01 1 202701012 202701012 C T KDM5B Missense_Mutation p.R1322K 0.29 tolerated(0.65) benign(0.256) TCGA-AA-3984-01 1 203152851 203152851 C T CHI3L1 Missense_Mutation p.R128H 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 1 203188394 203188394 G A CHIT1 Missense_Mutation p.R327W 0.32 deleterious(0) possibly_damaging(0.604) TCGA-AA-3984-01 1 203472852 203472852 G A OPTC 3'UTR 0.50 TCGA-AA-3984-01 1 203668667 203668667 C A ATP2B4 Missense_Mutation p.F157L 0.16 tolerated(1) benign(0.011) TCGA-AA-3984-01 1 203709029 203709029 C T ATP2B4 3'UTR 0.29 TCGA-AA-3984-01 1 203743181 203743181 C T LAX1 Missense_Mutation p.S190L 0.28 deleterious(0.03) benign(0.011) TCGA-AA-3984-01 1 204125866 204125866 C T REN Missense_Mutation p.E253K 0.28 tolerated(0.37) benign(0.016) TCGA-AA-3984-01 1 20470016 20470016 T C PLA2G2F Missense_Mutation p.S83P 0.34 deleterious(0) probably_damaging(0.943) TCGA-AA-3984-01 1 204942523 204942523 G A NFASC Missense_Mutation p.A419T 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 1 204948497 204948497 C T NFASC Silent p.V662V 0.15 TCGA-AA-3984-01 1 205052552 205052552 C A TMEM81 3'UTR 0.38 TCGA-AA-3984-01 1 205057906 205057906 C T RBBP5 3'UTR 0.27 TCGA-AA-3984-01 1 205064086 205064086 C T RBBP5 Silent p.P501P 0.27 TCGA-AA-3984-01 1 205350799 205350799 G A LEMD1 Missense_Mutation p.S178L 0.07 tolerated(0.05) benign(0) TCGA-AA-3984-01 1 205628510 205628510 G C SLC45A3 Missense_Mutation p.A505G 0.09 deleterious(0.01) benign(0.315) TCGA-AA-3984-01 1 205632010 205632010 G A SLC45A3 Silent p.G303G 0.30 TCGA-AA-3984-01 1 205813958 205813958 G T PM20D1 Missense_Mutation p.S186Y 0.23 deleterious(0) possibly_damaging(0.796) TCGA-AA-3984-01 1 206240187 206240187 C T C1orf186 Missense_Mutation p.D89N 0.31 tolerated(0.19) benign(0.044) TCGA-AA-3984-01 1 206651534 206651534 G T IKBKE Missense_Mutation p.A282S 0.45 deleterious(0.01) probably_damaging(0.926) TCGA-AA-3984-01 1 206731009 206731009 A C RASSF5 Intron 0.23 TCGA-AA-3984-01 1 20674813 20674813 C T VWA5B1 Missense_Mutation p.P946L 0.27 tolerated(0.12) benign(0.004) TCGA-AA-3984-01 1 206902418 206902418 G A MAPKAPK2 Missense_Mutation p.R153Q 0.28 tolerated(0.08) benign(0.297) TCGA-AA-3984-01 1 206944309 206944309 C T IL10 Silent p.A107A 0.31 TCGA-AA-3984-01 1 206945754 206945754 G A IL10 Silent p.C9C 0.30 TCGA-AA-3984-01 1 207646416 207646416 G T CR2 Missense_Mutation p.D624Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 1 207753678 207753678 A G CR1 Missense_Mutation p.E1677G 0.36 deleterious(0.01) probably_damaging(0.921) TCGA-AA-3984-01 1 208063323 208063323 G T CD34 Intron 0.33 TCGA-AA-3984-01 1 208206680 208206680 C T PLXNA2 Missense_Mutation p.R1680Q 0.31 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 1 20880766 20880766 G A FAM43B 3'UTR 0.36 TCGA-AA-3984-01 1 209795996 209795996 C A LAMB3 Missense_Mutation p.Q862H 0.14 deleterious(0) possibly_damaging(0.67) TCGA-AA-3984-01 1 209824325 209824325 T C LAMB3 5'UTR 0.26 TCGA-AA-3984-01 1 209948748 209948748 A C TRAF3IP3 Missense_Mutation p.N277H 0.33 deleterious(0.02) benign(0.028) TCGA-AA-3984-01 1 209951514 209951514 G A TRAF3IP3 Silent p.L416L 0.28 TCGA-AA-3984-01 1 210273697 210273697 G A SYT14 Missense_Mutation p.R397H 0.27 deleterious(0.02) probably_damaging(0.988) TCGA-AA-3984-01 1 210273728 210273728 G T SYT14 Missense_Mutation p.K407N 0.10 deleterious(0.03) benign(0.43) TCGA-AA-3984-01 1 210948721 210948721 T C KCNH1 Missense_Mutation p.N694S 0.21 deleterious(0.04) benign(0.358) TCGA-AA-3984-01 1 21100116 21100116 G T HP1BP3 Intron 0.32 TCGA-AA-3984-01 1 211486160 211486160 C T RCOR3 Missense_Mutation p.R392W 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 1 211842553 211842553 G A NEK2 Missense_Mutation p.S296L 0.08 tolerated(0.71) benign(0) TCGA-AA-3984-01 1 21186965 21186965 C T EIF4G3 Missense_Mutation p.E1003K 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3984-01 1 212148704 212148704 T C INTS7 Missense_Mutation p.D540G 0.31 tolerated(0.43) benign(0.003) TCGA-AA-3984-01 1 212530532 212530532 G A PPP2R5A Missense_Mutation p.E378K 0.29 deleterious(0.01) benign(0.422) TCGA-AA-3984-01 1 212800079 212800079 T G FAM71A 3'UTR 0.34 TCGA-AA-3984-01 1 214543024 214543024 C T PTPN14 Missense_Mutation p.R1016Q 0.28 deleterious(0) probably_damaging(0.981) TCGA-AA-3984-01 1 214836993 214836993 G A CENPF Silent p.T3067T 0.20 TCGA-AA-3984-01 1 215824091 215824091 C A USH2A Missense_Mutation p.R4729I 0.23 possibly_damaging(0.707) TCGA-AA-3984-01 1 215848679 215848679 G A USH2A Missense_Mutation p.R4192C 0.07 probably_damaging(0.977) TCGA-AA-3984-01 1 215853544 215853544 G A USH2A Missense_Mutation p.R4081W 0.10 probably_damaging(0.972) TCGA-AA-3984-01 1 215931968 215931968 A C USH2A Silent p.P3786P 0.24 TCGA-AA-3984-01 1 216052294 216052294 A T USH2A Silent p.S2790S 0.10 TCGA-AA-3984-01 1 216420302 216420302 T C USH2A Missense_Mutation p.T812A 0.30 probably_damaging(0.951) TCGA-AA-3984-01 1 216595407 216595407 C T USH2A Missense_Mutation p.R91K 0.11 possibly_damaging(0.685) TCGA-AA-3984-01 1 217793291 217793291 C A GPATCH2 Nonsense_Mutation p.E203* 0.29 TCGA-AA-3984-01 1 218520154 218520154 C T TGFB2 Silent p.I37I 0.20 TCGA-AA-3984-01 1 220152858 220152858 T G EPRS Missense_Mutation p.N1271H 0.31 deleterious(0) possibly_damaging(0.861) TCGA-AA-3984-01 1 220197706 220197706 C A EPRS Missense_Mutation p.E281D 0.07 tolerated(0.07) benign(0.246) TCGA-AA-3984-01 1 220232323 220232323 C T BPNT1 Missense_Mutation p.D264N 0.14 tolerated(0.07) probably_damaging(1) TCGA-AA-3984-01 1 220298601 220298601 A C IARS2 Missense_Mutation p.K555Q 0.09 tolerated(0.31) benign(0.014) TCGA-AA-3984-01 1 220440565 220440565 C A RAB3GAP2 Intron 0.35 TCGA-AA-3984-01 1 220809264 220809264 G T MARK1 Missense_Mutation p.D456Y 0.29 deleterious(0.04) possibly_damaging(0.526) TCGA-AA-3984-01 1 220986769 220986769 G A MARC1 3'UTR 0.27 TCGA-AA-3984-01 1 22168062 22168062 C T HSPG2 Missense_Mutation p.A3100T 0.37 benign(0.306) TCGA-AA-3984-01 1 222716889 222716889 T G HHIPL2 Missense_Mutation p.K322Q 0.15 tolerated(0.31) possibly_damaging(0.548) TCGA-AA-3984-01 1 222802186 222802186 G A MIA3 Missense_Mutation p.E542K 0.26 tolerated(0.14) possibly_damaging(0.756) TCGA-AA-3984-01 1 222805554 222805554 G T MIA3 Nonsense_Mutation p.E1073* 0.26 TCGA-AA-3984-01 1 222838683 222838683 G T MIA3 Nonsense_Mutation p.E1816* 0.23 TCGA-AA-3984-01 1 222904777 222904777 C T BROX Silent p.F356F 0.12 TCGA-AA-3984-01 1 223176566 223176566 C T DISP1 Silent p.F609F 0.27 TCGA-AA-3984-01 1 223853145 223853145 C T CAPN8 Silent p.P68P 0.27 TCGA-AA-3984-01 1 223934751 223934751 G A CAPN2 Missense_Mutation p.E205K 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 223943197 223943197 A G CAPN2 Missense_Mutation p.N384S 0.29 deleterious(0) possibly_damaging(0.747) TCGA-AA-3984-01 1 223983937 223983937 C T TP53BP2 Missense_Mutation p.M768I 0.12 tolerated(0.1) probably_damaging(0.958) TCGA-AA-3984-01 1 224001984 224001984 G A TP53BP2 Missense_Mutation p.R83C 0.30 deleterious(0) possibly_damaging(0.487) TCGA-AA-3984-01 1 224345344 224345344 T G FBXO28 Missense_Mutation p.S335A 0.28 tolerated(0.33) benign(0.003) TCGA-AA-3984-01 1 224619251 224619251 T C WDR26 Silent p.L185L 0.27 TCGA-AA-3984-01 1 2252933 2252933 G A MORN1 Silent p.V461V 0.35 TCGA-AA-3984-01 1 225306929 225306929 C T DNAH14 Missense_Mutation p.R445C 0.34 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 1 225541550 225541550 T C DNAH14 Missense_Mutation p.F3767S 0.26 benign(0.294) TCGA-AA-3984-01 1 226059726 226059726 C T TMEM63A Silent p.S98S 0.30 TCGA-AA-3984-01 1 226252163 226252163 G T H3F3A Missense_Mutation p.K37N 0.19 deleterious_low_confidence(0.02) benign(0.013) TCGA-AA-3984-01 1 226784510 226784510 C T C1orf95 Silent p.F70F 0.12 TCGA-AA-3984-01 1 227096294 227096294 G A ADCK3 5'UTR 0.31 TCGA-AA-3984-01 1 227834275 227834275 G T ZNF678 5'UTR 0.27 TCGA-AA-3984-01 1 227834318 227834318 G A ZNF678 5'UTR 0.27 TCGA-AA-3984-01 1 227842889 227842889 G T ZNF678 Missense_Mutation p.R313I 0.25 tolerated(0.29) benign(0.175) TCGA-AA-3984-01 1 228113108 228113108 G A WNT9A Missense_Mutation p.R70C 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 228238369 228238369 C T WNT3A Missense_Mutation p.S109L 0.39 deleterious(0) possibly_damaging(0.625) TCGA-AA-3984-01 1 228285118 228285118 G A ARF1 Missense_Mutation p.R75Q 0.11 deleterious_low_confidence(0.04) benign(0.037) TCGA-AA-3984-01 1 228451972 228451972 C T OBSCN Nonsense_Mutation p.R1765* 0.07 TCGA-AA-3984-01 1 228469640 228469640 A G OBSCN Missense_Mutation p.H3164R 0.27 probably_damaging(0.98) TCGA-AA-3984-01 1 228470930 228470930 C T OBSCN Silent p.G3323G 0.21 TCGA-AA-3984-01 1 228481089 228481089 G A OBSCN Missense_Mutation p.E4064K 0.34 benign(0.006) TCGA-AA-3984-01 1 228547975 228547975 G A OBSCN Intron 0.26 TCGA-AA-3984-01 1 228558444 228558444 G A OBSCN Missense_Mutation p.R7701Q 0.14 probably_damaging(0.975) TCGA-AA-3984-01 1 229462629 229462629 C T CCSAP Silent p.R164R 0.30 TCGA-AA-3984-01 1 229596515 229596515 T C NUP133 Missense_Mutation p.N896S 0.23 deleterious(0.04) benign(0.085) TCGA-AA-3984-01 1 229631744 229631744 C T NUP133 Silent p.T290T 0.31 TCGA-AA-3984-01 1 229676463 229676463 G A ABCB10 Nonsense_Mutation p.R365* 0.10 TCGA-AA-3984-01 1 22973958 22973958 C A C1QC Missense_Mutation p.F140L 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 229795065 229795065 G A URB2 3'UTR 0.33 TCGA-AA-3984-01 1 230975494 230975494 G A C1orf198 3'UTR 0.30 TCGA-AA-3984-01 1 231413315 231413315 C T GNPAT 3'UTR 0.19 TCGA-AA-3984-01 1 231700526 231700526 T G TSNAX Missense_Mutation p.L250V 0.29 tolerated(0.05) possibly_damaging(0.898) TCGA-AA-3984-01 1 231830015 231830015 G A DISC1 Missense_Mutation p.V171I 0.34 tolerated(0.48) benign(0.017) TCGA-AA-3984-01 1 231858458 231858458 G A DISC1 Intron 0.31 TCGA-AA-3984-01 1 231954098 231954098 G A DISC1 Missense_Mutation p.D606N 0.25 deleterious(0) probably_damaging(0.933) TCGA-AA-3984-01 1 232561550 232561550 G A SIPA1L2 Missense_Mutation p.S1472L 0.20 tolerated(0.34) benign(0.034) TCGA-AA-3984-01 1 232615429 232615429 C T SIPA1L2 Missense_Mutation p.E677K 0.33 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 1 232650179 232650179 C T SIPA1L2 Missense_Mutation p.E303K 0.19 tolerated(0.06) possibly_damaging(0.679) TCGA-AA-3984-01 1 233231577 233231577 G A PCNXL2 Silent p.V1290V 0.13 TCGA-AA-3984-01 1 233511536 233511536 C T MLK4 Intron 0.11 TCGA-AA-3984-01 1 23382443 23382443 T G KDM1A Missense_Mutation p.V301G 0.37 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 1 23420244 23420244 G A LUZP1 Missense_Mutation p.R171C 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 235344971 235344971 G A ARID4B Missense_Mutation p.S1088L 0.31 deleterious(0.05) probably_damaging(0.99) TCGA-AA-3984-01 1 235506104 235506104 A G GGPS1 3'UTR 0.29 TCGA-AA-3984-01 1 235920637 235920637 T C LYST Missense_Mutation p.T2335A 0.33 tolerated(0.66) benign(0.002) TCGA-AA-3984-01 1 235969998 235969998 C T LYST Missense_Mutation p.R813Q 0.31 deleterious(0) possibly_damaging(0.895) TCGA-AA-3984-01 1 235970023 235970023 C T LYST Missense_Mutation p.E805K 0.22 deleterious(0.01) possibly_damaging(0.664) TCGA-AA-3984-01 1 236141179 236141179 G A NID1 Silent p.I1244I 0.25 TCGA-AA-3984-01 1 236189236 236189236 G T NID1 Silent p.I648I 0.23 TCGA-AA-3984-01 1 236433209 236433209 T G ERO1LB Missense_Mutation p.K63T 0.27 tolerated(0.15) benign(0.201) TCGA-AA-3984-01 1 236739588 236739588 A C HEATR1 Missense_Mutation p.S1005R 0.33 tolerated(0.51) benign(0.001) TCGA-AA-3984-01 1 23688783 23688783 G A ZNF436 Silent p.C364C 0.38 TCGA-AA-3984-01 1 236902625 236902625 G A ACTN2 Silent p.T300T 0.21 TCGA-AA-3984-01 1 236925808 236925808 G A ACTN2 Silent p.Q858Q 0.34 TCGA-AA-3984-01 1 237586525 237586525 G A RYR2 Missense_Mutation p.A328T 0.20 possibly_damaging(0.824) TCGA-AA-3984-01 1 23762349 23762349 C T ASAP3 Missense_Mutation p.A582T 0.13 tolerated(0.08) benign(0.001) TCGA-AA-3984-01 1 237804242 237804242 G A RYR2 Silent p.A2387A 0.22 TCGA-AA-3984-01 1 237814761 237814761 A G RYR2 Missense_Mutation p.D2595G 0.20 probably_damaging(0.999) TCGA-AA-3984-01 1 237819208 237819208 T G RYR2 Missense_Mutation p.Y2685D 0.23 benign(0.136) TCGA-AA-3984-01 1 237837422 237837422 C T RYR2 Missense_Mutation p.P2873S 0.08 probably_damaging(1) TCGA-AA-3984-01 1 237923154 237923154 T C RYR2 Splice_Site p.X3801_splice 0.08 TCGA-AA-3984-01 1 237948030 237948030 G A RYR2 Missense_Mutation p.D4340N 0.09 probably_damaging(0.999) TCGA-AA-3984-01 1 23966901 23966902 - AGG MDS2 In_Frame_Ins p.R95dup 0.22 TCGA-AA-3984-01 1 24112191 24112191 T G PITHD1 Missense_Mutation p.F116C 0.15 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 24119674 24119674 G A LYPLA2 Silent p.R48R 0.15 TCGA-AA-3984-01 1 241714340 241714340 C A KMO Missense_Mutation p.S103Y 0.14 deleterious(0) benign(0.013) TCGA-AA-3984-01 1 241752099 241752099 G A KMO Silent p.A355A 0.31 TCGA-AA-3984-01 1 241875162 241875162 G A WDR64 Missense_Mutation p.A335T 0.28 deleterious(0.01) possibly_damaging(0.522) TCGA-AA-3984-01 1 244220751 244220751 A G ZBTB18 3'UTR 0.25 TCGA-AA-3984-01 1 244538699 244538699 G T C1orf100 Missense_Mutation p.D28Y 0.09 tolerated(0.07) probably_damaging(1) TCGA-AA-3984-01 1 244803348 244803348 C A C1orf101 Missense_Mutation p.L941I 0.23 tolerated(0.14) benign(0.076) TCGA-AA-3984-01 1 245017697 245017697 C T HNRNPU 3'UTR 0.28 TCGA-AA-3984-01 1 245246987 245246987 G T EFCAB2 Nonsense_Mutation p.E124* 0.25 TCGA-AA-3984-01 1 245765894 245765894 C T KIF26B Missense_Mutation p.R456C 0.29 deleterious(0) unknown(0) TCGA-AA-3984-01 1 246707845 246707845 C T TFB2M Missense_Mutation p.A333T 0.12 tolerated(0.09) possibly_damaging(0.883) TCGA-AA-3984-01 1 247201199 247201199 C T ZNF670 Missense_Mutation p.R241H 0.19 tolerated(0.08) benign(0.208) TCGA-AA-3984-01 1 247588359 247588359 G T NLRP3 Missense_Mutation p.E538D 0.33 tolerated(0.2) benign(0.011) TCGA-AA-3984-01 1 24779956 24779956 A G NIPAL3 Missense_Mutation p.N200S 0.10 tolerated(0.06) benign(0.034) TCGA-AA-3984-01 1 247835595 247835595 G T OR13G1 Missense_Mutation p.S250Y 0.28 deleterious(0) possibly_damaging(0.459) TCGA-AA-3984-01 1 247836013 247836013 G T OR13G1 Missense_Mutation p.L111I 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-AA-3984-01 1 247902533 247902533 T G OR14K1 Missense_Mutation p.F206C 0.27 deleterious(0.03) probably_damaging(0.972) TCGA-AA-3984-01 1 247921392 247921392 G T OR1C1 Missense_Mutation p.S106Y 0.13 tolerated(0.36) benign(0.198) TCGA-AA-3984-01 1 248224497 248224497 G A OR2L3 Missense_Mutation p.A172T 0.19 tolerated(0.31) benign(0.011) TCGA-AA-3984-01 1 248262753 248262753 C A OR2L13 Missense_Mutation p.L26I 0.29 deleterious(0.01) benign(0.334) TCGA-AA-3984-01 1 248367185 248367185 G T OR2M3 Missense_Mutation p.K272N 0.06 deleterious(0) benign(0.091) TCGA-AA-3984-01 1 248402933 248402933 C T OR2M4 Missense_Mutation p.R235C 0.27 deleterious(0.03) benign(0.024) TCGA-AA-3984-01 1 248436875 248436875 G C OR2T33 Missense_Mutation p.A81G 0.22 tolerated(0.27) benign(0.02) TCGA-AA-3984-01 1 248570399 248570399 C A OR2T1 Silent p.V368V 0.33 TCGA-AA-3984-01 1 248636757 248636757 A G OR2T3 Missense_Mutation p.T36A 0.20 deleterious(0) benign(0.057) TCGA-AA-3984-01 1 248636864 248636864 C T OR2T3 Silent p.L71L 0.26 TCGA-AA-3984-01 1 248637040 248637040 C T OR2T3 Missense_Mutation p.A130V 0.06 deleterious(0.02) probably_damaging(0.996) TCGA-AA-3984-01 1 248685229 248685229 C T OR2G6 Silent p.Y94Y 0.23 TCGA-AA-3984-01 1 248845524 248845524 G A OR14I1 Silent p.L28L 0.10 TCGA-AA-3984-01 1 249148146 249148146 C T ZNF692 Silent p.K386K 0.26 TCGA-AA-3984-01 1 25679392 25679392 C T TMEM50A Silent p.F98F 0.28 TCGA-AA-3984-01 1 26378098 26378098 A C TRIM63 3'UTR 0.60 TCGA-AA-3984-01 1 26392785 26392785 G A TRIM63 Silent p.I102I 0.28 TCGA-AA-3984-01 1 26691079 26691079 T G ZNF683 Missense_Mutation p.I320L 0.24 deleterious(0.03) possibly_damaging(0.514) TCGA-AA-3984-01 1 27058078 27058078 C T ARID1A Missense_Mutation p.R596C 0.26 benign(0.254) TCGA-AA-3984-01 1 27094291 27094291 C A ARID1A Missense_Mutation p.S1000Y 0.36 unknown(0) TCGA-AA-3984-01 1 27332720 27332720 G A FAM46B Silent p.F331F 0.32 TCGA-AA-3984-01 1 27722000 27722000 G T GPR3 3'UTR 0.10 TCGA-AA-3984-01 1 28240623 28240623 G A RPA2 Missense_Mutation p.S23F 0.30 deleterious(0) benign(0.191) TCGA-AA-3984-01 1 28818268 28818268 A C PHACTR4 Missense_Mutation p.K672T 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 29630376 29630376 G A PTPRU Missense_Mutation p.R839H 0.11 tolerated(0.34) benign(0.075) TCGA-AA-3984-01 1 31189685 31189685 C T MATN1 Missense_Mutation p.A248T 0.23 tolerated(0.48) benign(0.015) TCGA-AA-3984-01 1 31206723 31206723 C T LAPTM5 Silent p.S247S 0.19 TCGA-AA-3984-01 1 32259811 32259811 C T SPOCD1 Missense_Mutation p.S766N 0.30 deleterious(0.03) benign(0.391) TCGA-AA-3984-01 1 32374438 32374438 C T PTP4A2 3'UTR 0.27 TCGA-AA-3984-01 1 32635543 32635543 G A KPNA6 Silent p.S435S 0.24 TCGA-AA-3984-01 1 32713189 32713189 G A FAM167B Missense_Mutation p.R56H 0.29 tolerated(0.25) benign(0) TCGA-AA-3984-01 1 32741971 32741971 G A LCK Missense_Mutation p.R222H 0.38 tolerated(0.34) benign(0.188) TCGA-AA-3984-01 1 3319387 3319387 G A PRDM16 Missense_Mutation p.E237K 0.24 tolerated(0.06) possibly_damaging(0.625) TCGA-AA-3984-01 1 3328132 3328132 T G PRDM16 Missense_Mutation p.F457L 0.19 tolerated(0.06) benign(0.077) TCGA-AA-3984-01 1 3331192 3331192 C T PRDM16 Missense_Mutation p.P891L 0.08 deleterious(0) possibly_damaging(0.781) TCGA-AA-3984-01 1 33404114 33404114 G A RNF19B Silent p.A543A 0.29 TCGA-AA-3984-01 1 33613209 33613209 G A TRIM62 Missense_Mutation p.R333C 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 33625383 33625383 G A TRIM62 Missense_Mutation p.R223C 0.09 deleterious(0.03) possibly_damaging(0.855) TCGA-AA-3984-01 1 33772522 33772522 C T A3GALT2 Missense_Mutation p.D290N 0.53 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 1 33820577 33820577 G A PHC2 Silent p.G418G 0.18 TCGA-AA-3984-01 1 3415381 3415381 G A MEGF6 Missense_Mutation p.A1035V 0.36 tolerated(0.27) benign(0.009) TCGA-AA-3984-01 1 35321123 35321123 G A SMIM12 3'UTR 0.09 TCGA-AA-3984-01 1 35370481 35370481 G T DLGAP3 Missense_Mutation p.S168R 0.38 deleterious(0) probably_damaging(0.969) TCGA-AA-3984-01 1 35476600 35476600 G A ZMYM6 Missense_Mutation p.A367V 0.22 tolerated(0.4) benign(0.005) TCGA-AA-3984-01 1 35579686 35579686 T G ZMYM1 Nonsense_Mutation p.L752* 0.30 TCGA-AA-3984-01 1 35824813 35824813 G T ZMYM4 Nonsense_Mutation p.E125* 0.31 TCGA-AA-3984-01 1 36230278 36230278 T G CLSPN Missense_Mutation p.K57N 0.30 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 1 36282548 36282548 C T AGO4 Nonsense_Mutation p.R29* 0.32 TCGA-AA-3984-01 1 36358783 36358783 G A AGO1 Missense_Mutation p.R139Q 0.26 tolerated(0.47) benign(0.003) TCGA-AA-3984-01 1 36643645 36643645 C T MAP7D1 Silent p.S517S 0.16 TCGA-AA-3984-01 1 3673334 3673334 C T CCDC27 Silent p.F197F 0.07 TCGA-AA-3984-01 1 37271751 37271751 G A GRIK3 Silent p.I756I 0.29 TCGA-AA-3984-01 1 38304324 38304324 C T MTF1 Missense_Mutation p.R251Q 0.29 deleterious(0) probably_damaging(0.973) TCGA-AA-3984-01 1 39341151 39341151 T G GJA9 Missense_Mutation p.E207A 0.32 deleterious(0) probably_damaging(0.977) TCGA-AA-3984-01 1 39799953 39799953 C A MACF1 Intron 0.22 TCGA-AA-3984-01 1 39800847 39800847 G T MACF1 Intron 0.62 TCGA-AA-3984-01 1 40031012 40031012 G T PABPC4 Missense_Mutation p.F337L 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 40092782 40092782 G T HEYL Silent p.V128V 0.41 TCGA-AA-3984-01 1 40318534 40318534 G A TRIT1 Silent p.G143G 0.15 TCGA-AA-3984-01 1 40656454 40656454 G A RLF Missense_Mutation p.E135K 0.08 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 1 40702979 40702979 G T RLF Missense_Mutation p.D869Y 0.09 deleterious(0.01) benign(0.073) TCGA-AA-3984-01 1 40704062 40704062 G T RLF Nonsense_Mutation p.E1230* 0.12 TCGA-AA-3984-01 1 40777742 40777742 G A COL9A2 Nonsense_Mutation p.R136* 0.19 TCGA-AA-3984-01 1 40916623 40916623 C T ZFP69B 5'UTR 0.25 TCGA-AA-3984-01 1 40928480 40928480 A C ZFP69B Missense_Mutation p.K275T 0.22 tolerated(0.17) benign(0.291) TCGA-AA-3984-01 1 40980392 40980392 G A EXO5 Missense_Mutation p.S59N 0.21 tolerated(0.44) benign(0.003) TCGA-AA-3984-01 1 41098748 41098748 T C RIMS3 Silent p.P155P 0.27 TCGA-AA-3984-01 1 42050481 42050481 G T HIVEP3 5'UTR 0.18 TCGA-AA-3984-01 1 42657168 42657168 C T FOXJ3 Missense_Mutation p.R386Q 0.32 tolerated_low_confidence(0.6) benign(0.194) TCGA-AA-3984-01 1 43212703 43212703 G T LEPRE1 Missense_Mutation p.F765L 0.26 deleterious_low_confidence(0) benign(0.294) TCGA-AA-3984-01 1 43622003 43622003 C A FAM183A 3'UTR 0.10 TCGA-AA-3984-01 1 43675705 43675705 C A WDR65 Missense_Mutation p.H683N 0.25 deleterious_low_confidence(0) benign(0.216) TCGA-AA-3984-01 1 43777461 43777461 C T TIE1 Missense_Mutation p.R485W 0.11 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 1 43805051 43805051 C T MPL Silent p.Y167Y 0.07 TCGA-AA-3984-01 1 43918640 43918640 A G HYI Intron 0.34 TCGA-AA-3984-01 1 44432626 44432626 G T IPO13 Nonsense_Mutation p.E850* 0.28 TCGA-AA-3984-01 1 44441774 44441774 G A ATP6V0B Silent p.E43E 0.28 TCGA-AA-3984-01 1 44584594 44584594 G A KLF17 Silent p.P5P 0.31 TCGA-AA-3984-01 1 44680601 44680601 G T DMAP1 Intron 0.40 TCGA-AA-3984-01 1 45155399 45155399 T C C1orf228 Silent p.I10I 0.29 TCGA-AA-3984-01 1 45812364 45812364 C T TESK2 Splice_Site p.X293_splice 0.23 TCGA-AA-3984-01 1 46081033 46081033 G T NASP Nonsense_Mutation p.E638* 0.34 TCGA-AA-3984-01 1 46081063 46081063 G A NASP Missense_Mutation p.E648K 0.32 deleterious(0) probably_damaging(0.98) TCGA-AA-3984-01 1 46509357 46509357 C T PIK3R3 Silent p.S458S 0.30 TCGA-AA-3984-01 1 46827634 46827634 G A NSUN4 3'UTR 0.20 TCGA-AA-3984-01 1 47015620 47015620 A C KNCN Intron 0.19 TCGA-AA-3984-01 1 47280907 47280907 G T CYP4B1 Missense_Mutation p.E348D 0.21 tolerated(0.39) benign(0.023) TCGA-AA-3984-01 1 47364654 47364654 A C CYP4Z2P Intron 0.26 TCGA-AA-3984-01 1 4772288 4772288 C T AJAP1 Missense_Mutation p.P120S 0.36 tolerated(0.58) possibly_damaging(0.51) TCGA-AA-3984-01 1 47838753 47838753 G A CMPK1 Missense_Mutation p.V149I 0.16 tolerated(0.05) benign(0.072) TCGA-AA-3984-01 1 48999954 48999954 G A AGBL4 Missense_Mutation p.S468F 0.09 tolerated_low_confidence(0.1) benign(0) TCGA-AA-3984-01 1 49119053 49119053 G A AGBL4 Silent p.I265I 0.25 TCGA-AA-3984-01 1 49511367 49511367 G A AGBL4 Silent p.Y161Y 0.29 TCGA-AA-3984-01 1 50666896 50666896 A G ELAVL4 3'UTR 0.36 TCGA-AA-3984-01 1 51761772 51761772 T C TTC39A Missense_Mutation p.D379G 0.12 deleterious(0.01) possibly_damaging(0.864) TCGA-AA-3984-01 1 51868131 51868131 A C EPS15 Missense_Mutation p.F620V 0.30 deleterious(0.03) probably_damaging(1) TCGA-AA-3984-01 1 52442586 52442586 C A RAB3B Missense_Mutation p.E68D 0.10 tolerated(0.53) benign(0.002) TCGA-AA-3984-01 1 52729497 52729497 G A ZFYVE9 Missense_Mutation p.R744K 0.29 tolerated(0.29) benign(0.019) TCGA-AA-3984-01 1 52840566 52840566 A C ORC1 Missense_Mutation p.N769K 0.24 deleterious(0.02) possibly_damaging(0.542) TCGA-AA-3984-01 1 52862001 52862001 C T ORC1 Silent p.T146T 0.10 TCGA-AA-3984-01 1 53323186 53323186 T G ZYG11A Missense_Mutation p.L258R 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 53459428 53459428 C T SCP2 Intron 0.19 TCGA-AA-3984-01 1 53516286 53516286 C A SCP2 Missense_Mutation p.F518L 0.33 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 1 53532493 53532493 T G PODN Intron 0.23 TCGA-AA-3984-01 1 53574150 53574150 A G SLC1A7 Intron 0.30 TCGA-AA-3984-01 1 54238156 54238156 C T NDC1 Missense_Mutation p.D603N 0.12 deleterious(0) possibly_damaging(0.449) TCGA-AA-3984-01 1 55614160 55614160 T C USP24 Silent p.K648K 0.24 TCGA-AA-3984-01 1 57173271 57173271 C T PRKAA2 Missense_Mutation p.S515F 0.20 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-AA-3984-01 1 57221574 57221574 T C C1orf168 Silent p.E375E 0.29 TCGA-AA-3984-01 1 57499076 57499076 T C DAB1 Intron 0.25 TCGA-AA-3984-01 1 59147759 59147759 C T MYSM1 Silent p.L319L 0.24 TCGA-AA-3984-01 1 60309127 60309127 G T HOOK1 Missense_Mutation p.K215N 0.30 deleterious(0.02) possibly_damaging(0.816) TCGA-AA-3984-01 1 60505655 60505655 G A C1orf87 Silent p.V227V 0.29 TCGA-AA-3984-01 1 60521104 60521104 C T C1orf87 Silent p.E38E 0.31 TCGA-AA-3984-01 1 6142306 6142306 G A KCNAB2 Missense_Mutation p.D118N 0.25 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 1 61553900 61553900 G A NFIA Missense_Mutation p.R81Q 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 1 61553906 61553906 G A NFIA Missense_Mutation p.R83Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 6211107 6211107 G A CHD5 Missense_Mutation p.R327C 0.28 deleterious(0) possibly_damaging(0.586) TCGA-AA-3984-01 1 62367098 62367098 G A INADL Silent p.T1116T 0.10 TCGA-AA-3984-01 1 6246733 6246733 T G RPL22 Nonstop_Mutation p.*129Sext*71 0.27 TCGA-AA-3984-01 1 62672805 62672805 G A L1TD1 Missense_Mutation p.E169K 0.06 tolerated(1) unknown(0) TCGA-AA-3984-01 1 62672946 62672946 A C L1TD1 Missense_Mutation p.K216Q 0.10 tolerated(0.44) unknown(0) TCGA-AA-3984-01 1 62676155 62676155 A C L1TD1 Missense_Mutation p.K570T 0.32 deleterious(0.01) probably_damaging(0.966) TCGA-AA-3984-01 1 62676520 62676520 G A L1TD1 Missense_Mutation p.D692N 0.28 deleterious(0.03) possibly_damaging(0.682) TCGA-AA-3984-01 1 62728783 62728783 C T KANK4 Silent p.V840V 0.10 TCGA-AA-3984-01 1 62916299 62916299 C A USP1 Missense_Mutation p.L669I 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 1 63790367 63790367 C T FOXD3 3'UTR 0.10 TCGA-AA-3984-01 1 64117473 64117473 G A PGM1 Missense_Mutation p.D490N 0.13 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 1 64603141 64603141 C A ROR1 Missense_Mutation p.S191Y 0.27 deleterious(0.05) probably_damaging(0.998) TCGA-AA-3984-01 1 64643194 64643194 C T ROR1 Silent p.G490G 0.11 TCGA-AA-3984-01 1 64643554 64643554 C A ROR1 Missense_Mutation p.F610L 0.35 deleterious(0.04) possibly_damaging(0.464) TCGA-AA-3984-01 1 64644477 64644477 C A ROR1 Missense_Mutation p.S918Y 0.22 deleterious_low_confidence(0.01) benign(0.36) TCGA-AA-3984-01 1 64672529 64672529 T G UBE2U Missense_Mutation p.F77L 0.25 deleterious(0) probably_damaging(0.965) TCGA-AA-3984-01 1 64709910 64709910 T G UBE2U 3'UTR 0.19 TCGA-AA-3984-01 1 6473281 6473281 A G HES2 3'Flank 0.25 TCGA-AA-3984-01 1 65099731 65099731 C A CACHD1 Missense_Mutation p.S214Y 0.09 deleterious(0.02) possibly_damaging(0.735) TCGA-AA-3984-01 1 65131775 65131775 C A CACHD1 Missense_Mutation p.S720Y 0.27 deleterious(0.01) benign(0.02) TCGA-AA-3984-01 1 6520212 6520212 G A ESPN 3'UTR 0.34 TCGA-AA-3984-01 1 65313335 65313335 C T JAK1 Silent p.T593T 0.09 TCGA-AA-3984-01 1 65352023 65352023 C T JAK1 Intron 0.25 TCGA-AA-3984-01 1 6631015 6631015 C T TAS1R1 Missense_Mutation p.R80W 0.09 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 1 66829220 66829220 C T PDE4B Missense_Mutation p.S417L 0.18 deleterious(0) probably_damaging(0.991) TCGA-AA-3984-01 1 6727783 6727783 G A DNAJC11 Nonsense_Mutation p.R122* 0.32 TCGA-AA-3984-01 1 67412068 67412068 G A MIER1 Intron 0.20 TCGA-AA-3984-01 1 67724879 67724879 G T IL23R 3'UTR 0.31 TCGA-AA-3984-01 1 67855722 67855722 C T IL12RB2 Missense_Mutation p.L653F 0.34 deleterious(0.05) benign(0.029) TCGA-AA-3984-01 1 68895533 68895533 A C RPE65 Missense_Mutation p.L510V 0.22 deleterious(0) benign(0.269) TCGA-AA-3984-01 1 68910347 68910347 G A RPE65 Missense_Mutation p.S121F 0.08 deleterious(0) possibly_damaging(0.819) TCGA-AA-3984-01 1 68944890 68944890 A G DEPDC1 Silent p.L683L 0.29 TCGA-AA-3984-01 1 70478714 70478714 C A LRRC7 Missense_Mutation p.L360I 0.25 tolerated(0.05) probably_damaging(0.99) TCGA-AA-3984-01 1 70504482 70504482 A G LRRC7 Missense_Mutation p.D954G 0.23 deleterious(0) possibly_damaging(0.811) TCGA-AA-3984-01 1 70715642 70715642 C T SRSF11 Nonsense_Mutation p.R344* 0.27 TCGA-AA-3984-01 1 70728529 70728529 A G ANKRD13C Silent p.D499D 0.26 TCGA-AA-3984-01 1 70904926 70904926 C A CTH 3'UTR 0.21 TCGA-AA-3984-01 1 71418655 71418655 C A PTGER3 Nonsense_Mutation p.E398* 0.27 TCGA-AA-3984-01 1 7151393 7151393 G A CAMTA1 Silent p.E88E 0.29 TCGA-AA-3984-01 1 74621459 74621459 A G LRRIQ3 Missense_Mutation p.V222A 0.09 deleterious(0) benign(0.219) TCGA-AA-3984-01 1 74670818 74670818 G A FPGT Missense_Mutation p.E363K 0.64 tolerated(0.38) benign(0.007) TCGA-AA-3984-01 1 75037290 75037290 C A C1orf173 Missense_Mutation p.E1368D 0.09 tolerated(0.15) benign(0.15) TCGA-AA-3984-01 1 75055593 75055593 T C C1orf173 Missense_Mutation p.H633R 0.29 tolerated(0.09) benign(0.14) TCGA-AA-3984-01 1 75065506 75065506 A G C1orf173 Silent p.D533D 0.06 TCGA-AA-3984-01 1 75072408 75072408 A C C1orf173 Missense_Mutation p.F456V 0.10 tolerated(0.1) benign(0.009) TCGA-AA-3984-01 1 75669279 75669279 A G SLC44A5 3'Flank 0.38 TCGA-AA-3984-01 1 76198353 76198353 T G ACADM Missense_Mutation p.F52C 0.22 deleterious(0) probably_damaging(0.966) TCGA-AA-3984-01 1 76257952 76257952 A G RABGGTB Silent p.R222R 0.23 TCGA-AA-3984-01 1 76282113 76282113 A C MSH4 Missense_Mutation p.N291H 0.19 deleterious(0.01) possibly_damaging(0.797) TCGA-AA-3984-01 1 76343855 76343855 G T MSH4 Missense_Mutation p.K464N 0.29 deleterious(0.01) benign(0.314) TCGA-AA-3984-01 1 76344804 76344804 A C MSH4 Missense_Mutation p.E556D 0.27 tolerated(0.31) possibly_damaging(0.566) TCGA-AA-3984-01 1 7723933 7723933 C T CAMTA1 Silent p.F442F 0.13 TCGA-AA-3984-01 1 78031315 78031315 C A ZZZ3 3'UTR 0.29 TCGA-AA-3984-01 1 78041889 78041889 C T ZZZ3 Missense_Mutation p.R732Q 0.28 tolerated(0.1) probably_damaging(0.988) TCGA-AA-3984-01 1 78098733 78098733 T G ZZZ3 Missense_Mutation p.N103H 0.19 deleterious(0.02) possibly_damaging(0.606) TCGA-AA-3984-01 1 78207369 78207369 C T USP33 Missense_Mutation p.R36Q 0.30 tolerated(0.13) benign(0.001) TCGA-AA-3984-01 1 78325044 78325044 A G FAM73A Silent p.K387K 0.26 TCGA-AA-3984-01 1 7845514 7845514 C T PER3 Nonsense_Mutation p.R48* 0.29 TCGA-AA-3984-01 1 7887816 7887816 C T PER3 Missense_Mutation p.P935S 0.36 tolerated(0.15) possibly_damaging(0.857) TCGA-AA-3984-01 1 78958623 78958623 G A PTGFR Silent p.S65S 0.30 TCGA-AA-3984-01 1 79358809 79358809 T C ELTD1 Silent p.P605P 0.28 TCGA-AA-3984-01 1 82445638 82445638 A G LPHN2 Missense_Mutation p.N1019S 0.11 tolerated(0.1) benign(0.087) TCGA-AA-3984-01 1 82450375 82450375 C T LPHN2 Missense_Mutation p.R1114C 0.33 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 1 84372035 84372035 C A TTLL7 Nonsense_Mutation p.E702* 0.28 TCGA-AA-3984-01 1 84630556 84630556 C T PRKACB Intron 0.23 TCGA-AA-3984-01 1 84641485 84641485 C A PRKACB Intron 0.38 TCGA-AA-3984-01 1 84961130 84961130 G T RPF1 Nonsense_Mutation p.E231* 0.10 TCGA-AA-3984-01 1 84967584 84967584 C T GNG5 Missense_Mutation p.G51R 0.12 deleterious(0.01) benign(0.367) TCGA-AA-3984-01 1 85036366 85036366 G A CTBS Missense_Mutation p.S72F 0.27 tolerated(0.71) benign(0.003) TCGA-AA-3984-01 1 85331738 85331738 G A LPAR3 Silent p.V22V 0.08 TCGA-AA-3984-01 1 85422118 85422118 C T MCOLN2 Silent p.E187E 0.22 TCGA-AA-3984-01 1 85487838 85487838 A G MCOLN3 Missense_Mutation p.V412A 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 1 8555165 8555165 G A RERE Silent p.V354V 0.29 TCGA-AA-3984-01 1 85555908 85555908 T C WDR63 Missense_Mutation p.S284P 0.31 tolerated(0.26) benign(0.212) TCGA-AA-3984-01 1 85723128 85723128 A C C1orf52 Intron 0.31 TCGA-AA-3984-01 1 85736447 85736447 T G BCL10 Missense_Mutation p.K67T 0.31 tolerated(0.17) probably_damaging(0.939) TCGA-AA-3984-01 1 86047742 86047742 G T CYR61 Nonsense_Mutation p.E137* 0.26 TCGA-AA-3984-01 1 86171989 86171989 G A ZNHIT6 Nonsense_Mutation p.R258* 0.07 TCGA-AA-3984-01 1 86907190 86907190 C A CLCA2 Silent p.S484S 0.37 TCGA-AA-3984-01 1 86934607 86934607 C T CLCA1 5'UTR 0.10 TCGA-AA-3984-01 1 86939148 86939148 C T CLCA1 Nonsense_Mutation p.R71* 0.28 TCGA-AA-3984-01 1 87033126 87033126 G A CLCA4 Missense_Mutation p.R325Q 0.26 tolerated(0.06) possibly_damaging(0.453) TCGA-AA-3984-01 1 87041239 87041239 G T CLCA4 Missense_Mutation p.Q636H 0.12 tolerated(0.06) possibly_damaging(0.652) TCGA-AA-3984-01 1 87549881 87549881 G A HS2ST1 Missense_Mutation p.R123H 0.22 deleterious(0.04) benign(0.421) TCGA-AA-3984-01 1 87569134 87569134 G A HS2ST1 Missense_Mutation p.A236T 0.13 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 89318963 89318963 C T GTF2B Missense_Mutation p.R295Q 0.09 tolerated(0.05) benign(0.105) TCGA-AA-3984-01 1 89521784 89521784 G A GBP1 Missense_Mutation p.S428L 0.30 tolerated(0.09) possibly_damaging(0.489) TCGA-AA-3984-01 1 89575454 89575454 T C GBP2 Missense_Mutation p.Y522C 0.09 deleterious(0) benign(0.167) TCGA-AA-3984-01 1 89616080 89616080 G T GBP7 Missense_Mutation p.F268L 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 89735134 89735134 C T GBP5 Silent p.T35T 0.21 TCGA-AA-3984-01 1 89849661 89849661 C A GBP6 Missense_Mutation p.A493D 0.26 deleterious(0.03) probably_damaging(0.934) TCGA-AA-3984-01 1 89850865 89850865 G A GBP6 Missense_Mutation p.R580H 0.15 tolerated(0.13) benign(0) TCGA-AA-3984-01 1 9027809 9027809 G A CA6 Silent p.T221T 0.23 TCGA-AA-3984-01 1 90478724 90478724 G A ZNF326 Missense_Mutation p.R285Q 0.29 tolerated(0.25) possibly_damaging(0.885) TCGA-AA-3984-01 1 9101868 9101868 G A SLC2A5 Missense_Mutation p.R183W 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-AA-3984-01 1 9101878 9101878 G T SLC2A5 Silent p.I179I 0.19 TCGA-AA-3984-01 1 92177962 92177962 G T TGFBR3 Missense_Mutation p.F668L 0.39 deleterious(0.04) possibly_damaging(0.506) TCGA-AA-3984-01 1 92185457 92185457 G T TGFBR3 Missense_Mutation p.S469Y 0.16 deleterious(0) probably_damaging(0.987) TCGA-AA-3984-01 1 92200407 92200407 C T TGFBR3 Missense_Mutation p.R165Q 0.30 tolerated(1) benign(0.001) TCGA-AA-3984-01 1 92441903 92441903 G T BRDT Nonsense_Mutation p.E176* 0.29 TCGA-AA-3984-01 1 92456783 92456783 C T BRDT Missense_Mutation p.P682L 0.31 tolerated(0.07) benign(0.021) TCGA-AA-3984-01 1 92769866 92769866 C A RPAP2 Missense_Mutation p.S120Y 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 1 9305001 9305001 A C H6PD Missense_Mutation p.N3T 0.26 deleterious_low_confidence(0.04) benign(0.006) TCGA-AA-3984-01 1 93683309 93683309 G T CCDC18 Missense_Mutation p.K668N 0.24 tolerated(0.09) possibly_damaging(0.462) TCGA-AA-3984-01 1 94016768 94016768 A C FNBP1L Intron 0.29 TCGA-AA-3984-01 1 94342628 94342628 G T DNTTIP2 Missense_Mutation p.S288Y 0.12 deleterious(0.01) possibly_damaging(0.832) TCGA-AA-3984-01 1 94485240 94485240 G A ABCA4 Silent p.V1698V 0.27 TCGA-AA-3984-01 1 94508433 94508433 G A ABCA4 Missense_Mutation p.S1071L 0.40 deleterious(0) probably_damaging(0.916) TCGA-AA-3984-01 1 9713838 9713838 C A C1orf200 Nonstop_Mutation p.*168Lext*9 0.23 TCGA-AA-3984-01 1 97564076 97564076 A C DPYD Missense_Mutation p.F912C 0.07 tolerated(0.16) possibly_damaging(0.634) TCGA-AA-3984-01 1 97658787 97658787 C A DPYD Missense_Mutation p.Q820H 0.25 deleterious(0.02) benign(0.32) TCGA-AA-3984-01 1 98165013 98165013 G A DPYD Missense_Mutation p.L192F 0.29 deleterious(0.01) possibly_damaging(0.635) TCGA-AA-3984-01 20 10026268 10026268 C T ANKEF1 Missense_Mutation p.S248L 0.23 tolerated(0.05) benign(0.084) TCGA-AA-3984-01 20 10653503 10653503 C T JAG1 Missense_Mutation p.C78Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 20 13134674 13134674 C T SPTLC3 Missense_Mutation p.A435V 0.20 deleterious(0.02) benign(0.052) TCGA-AA-3984-01 20 13134719 13134719 T G SPTLC3 Missense_Mutation p.F450C 0.08 deleterious(0.04) probably_damaging(1) TCGA-AA-3984-01 20 13869146 13869146 A C SEL1L2 Missense_Mutation p.L188V 0.21 tolerated(0.05) possibly_damaging(0.869) TCGA-AA-3984-01 20 1424391 1424391 C T NSFL1C 3'UTR 0.44 TCGA-AA-3984-01 20 14307861 14307861 A G FLRT3 Missense_Mutation p.F98L 0.07 deleterious(0.05) benign(0.355) TCGA-AA-3984-01 20 1445016 1445016 G A NSFL1C Missense_Mutation p.S54L 0.26 tolerated(0.15) benign(0.219) TCGA-AA-3984-01 20 1584578 1584578 G A SIRPB1 Intron 0.21 TCGA-AA-3984-01 20 1585458 1585458 G A SIRPB1 Intron 0.15 TCGA-AA-3984-01 20 17479597 17479597 C T BFSP1 Missense_Mutation p.R275H 0.26 deleterious(0) probably_damaging(0.948) TCGA-AA-3984-01 20 17587862 17587862 A C DSTN 3'UTR 0.37 TCGA-AA-3984-01 20 17617323 17617323 T G RRBP1 Missense_Mutation p.K313Q 0.18 deleterious(0.04) possibly_damaging(0.607) TCGA-AA-3984-01 20 17640659 17640659 G A RRBP1 Missense_Mutation p.S165L 0.53 deleterious(0.03) possibly_damaging(0.519) TCGA-AA-3984-01 20 18794607 18794607 G A SCP2D1 Missense_Mutation p.D50N 0.36 tolerated(0.06) benign(0.01) TCGA-AA-3984-01 20 1961213 1961213 C T PDYN Missense_Mutation p.R174H 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-AA-3984-01 20 19662539 19662539 A G SLC24A3 Missense_Mutation p.T269A 0.22 tolerated(0.72) benign(0.028) TCGA-AA-3984-01 20 19951535 19951535 C T RIN2 Missense_Mutation p.S246L 0.19 deleterious(0) benign(0.079) TCGA-AA-3984-01 20 20016971 20016971 G T CRNKL1 Silent p.I805I 0.27 TCGA-AA-3984-01 20 20018071 20018071 G A CRNKL1 Nonsense_Mutation p.R759* 0.21 TCGA-AA-3984-01 20 20036685 20036685 G A CRNKL1 5'UTR 0.17 TCGA-AA-3984-01 20 20152514 20152514 G A C20orf26 Intron 0.13 TCGA-AA-3984-01 20 20351581 20351581 T G INSM1 3'UTR 0.17 TCGA-AA-3984-01 20 20373781 20373781 G A RALGAPA2 3'UTR 0.15 TCGA-AA-3984-01 20 21314188 21314188 G T XRN2 Nonsense_Mutation p.E289* 0.14 TCGA-AA-3984-01 20 22564918 22564918 G A FOXA2 5'UTR 0.10 TCGA-AA-3984-01 20 2315768 2315768 A C TGM3 Missense_Mutation p.E550A 0.17 tolerated(0.33) benign(0.004) TCGA-AA-3984-01 20 2320632 2320632 G A TGM3 Missense_Mutation p.D645N 0.08 tolerated(0.58) benign(0.069) TCGA-AA-3984-01 20 2321241 2321241 C T TGM3 3'UTR 0.22 TCGA-AA-3984-01 20 2413171 2413171 T C TGM6 Missense_Mutation p.V668A 0.29 deleterious(0.02) benign(0.072) TCGA-AA-3984-01 20 24939636 24939636 C T CST7 Missense_Mutation p.R106C 0.19 tolerated(0.05) benign(0.013) TCGA-AA-3984-01 20 25199209 25199209 C T ENTPD6 Missense_Mutation p.S301L 0.18 deleterious(0.05) probably_damaging(0.999) TCGA-AA-3984-01 20 25239909 25239909 C T PYGB Missense_Mutation p.R94C 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 20 25278000 25278000 C A PYGB 3'UTR 0.20 TCGA-AA-3984-01 20 25434140 25434140 G A NINL Missense_Mutation p.R1366C 0.23 deleterious(0.04) possibly_damaging(0.893) TCGA-AA-3984-01 20 25469916 25469916 G A NINL Silent p.F547F 0.21 TCGA-AA-3984-01 20 25656693 25656693 G A ZNF337 Nonsense_Mutation p.R411* 0.12 TCGA-AA-3984-01 20 2575598 2575598 T G TMC2 Missense_Mutation p.I354S 0.07 deleterious(0) benign(0.017) TCGA-AA-3984-01 20 2730147 2730147 G A EBF4 Missense_Mutation p.R243H 0.24 deleterious(0) probably_damaging(0.977) TCGA-AA-3984-01 20 2840756 2840756 G A VPS16 Missense_Mutation p.D67N 0.45 tolerated(0.29) benign(0.053) TCGA-AA-3984-01 20 2842331 2842331 G A VPS16 Missense_Mutation p.D294N 0.27 tolerated(0.53) benign(0.002) TCGA-AA-3984-01 20 30065714 30065714 G A REM1 Splice_Site p.X141_splice 0.23 TCGA-AA-3984-01 20 30193840 30193840 C A ID1 Intron 0.32 TCGA-AA-3984-01 20 30354391 30354391 G T TPX2 Nonsense_Mutation p.E88* 0.16 TCGA-AA-3984-01 20 30408203 30408203 G T MYLK2 Missense_Mutation p.K109N 0.18 tolerated(0.06) benign(0.004) TCGA-AA-3984-01 20 30534339 30534339 C T PDRG1 Silent p.K93K 0.14 TCGA-AA-3984-01 20 30818785 30818785 C T POFUT1 Missense_Mutation p.S300L 0.28 tolerated(0.12) benign(0.003) TCGA-AA-3984-01 20 3103213 3103213 G A UBOX5 Silent p.Y24Y 0.17 TCGA-AA-3984-01 20 31446729 31446729 T G EFCAB8 5'UTR 0.22 TCGA-AA-3984-01 20 3145712 3145712 G A LZTS3 Silent p.I470I 0.13 TCGA-AA-3984-01 20 31481047 31481047 G A EFCAB8 Missense_Mutation p.E276K 0.11 TCGA-AA-3984-01 20 31671246 31671246 T G BPIFB4 Silent p.L81L 0.17 TCGA-AA-3984-01 20 31699325 31699325 C T BPIFB4 3'UTR 0.22 TCGA-AA-3984-01 20 31825902 31825902 C A BPIFA1 Missense_Mutation p.L68M 0.45 deleterious(0) probably_damaging(0.991) TCGA-AA-3984-01 20 31825964 31825964 T C BPIFA1 Silent p.L88L 0.46 TCGA-AA-3984-01 20 31948102 31948102 T G CDK5RAP1 Intron 0.09 TCGA-AA-3984-01 20 3245111 3245111 C T C20orf194 Missense_Mutation p.R949Q 0.08 tolerated(0.14) probably_damaging(0.921) TCGA-AA-3984-01 20 33509600 33509600 C A ACSS2 Missense_Mutation p.F506L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 20 33576051 33576051 G A MYH7B Missense_Mutation p.D567N 0.11 probably_damaging(0.984) TCGA-AA-3984-01 20 33577900 33577900 G T MYH7B Missense_Mutation p.Q659H 0.16 possibly_damaging(0.717) TCGA-AA-3984-01 20 33586972 33586972 T C MYH7B Missense_Mutation p.V1477A 0.09 benign(0.107) TCGA-AA-3984-01 20 34022330 34022330 C T GDF5 Missense_Mutation p.D295N 0.12 deleterious(0.05) possibly_damaging(0.664) TCGA-AA-3984-01 20 34041894 34041894 T G GDF5 Intron 0.10 TCGA-AA-3984-01 20 34207510 34207510 T C SPAG4 Missense_Mutation p.F307L 0.26 tolerated(0.07) possibly_damaging(0.793) TCGA-AA-3984-01 20 34304723 34304723 T C RBM39 Missense_Mutation p.E277G 0.22 deleterious(0.03) possibly_damaging(0.735) TCGA-AA-3984-01 20 34322956 34322956 T G RBM39 Intron 0.23 TCGA-AA-3984-01 20 34776284 34776284 G A EPB41L1 Missense_Mutation p.D297N 0.22 deleterious(0) probably_damaging(0.926) TCGA-AA-3984-01 20 3520891 3520891 C T ATRN Missense_Mutation p.R173C 0.26 deleterious(0) probably_damaging(0.969) TCGA-AA-3984-01 20 35443549 35443549 C A SOGA1 Missense_Mutation p.D766Y 0.21 deleterious(0) possibly_damaging(0.891) TCGA-AA-3984-01 20 35444617 35444617 C A SOGA1 Missense_Mutation p.D410Y 0.30 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 20 35467693 35467693 C T SOGA1 Missense_Mutation p.R280H 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 20 36365846 36365846 A C CTNNBL1 Missense_Mutation p.N96H 0.20 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 20 3653264 3653264 C T ADAM33 Missense_Mutation p.D441N 0.23 tolerated(1) probably_damaging(0.951) TCGA-AA-3984-01 20 36846678 36846678 C T KIAA1755 Missense_Mutation p.A883T 0.24 tolerated(0.44) benign(0.002) TCGA-AA-3984-01 20 36940320 36940320 G A BPI Missense_Mutation p.R198Q 0.25 tolerated(0.14) benign(0.186) TCGA-AA-3984-01 20 36952351 36952351 G A BPI Missense_Mutation p.R283H 0.21 tolerated(0.17) benign(0.011) TCGA-AA-3984-01 20 37203537 37203537 G A RALGAPB Missense_Mutation p.R1471Q 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3984-01 20 37378808 37378808 G T ACTR5 Missense_Mutation p.K177N 0.44 tolerated(0.28) benign(0.175) TCGA-AA-3984-01 20 37576594 37576594 G A FAM83D Missense_Mutation p.E273K 0.17 deleterious(0.01) probably_damaging(0.923) TCGA-AA-3984-01 20 37638971 37638971 G A DHX35 Missense_Mutation p.R424H 0.15 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 20 3914823 3914823 G A RNF24 Missense_Mutation p.R133C 0.42 deleterious(0) possibly_damaging(0.738) TCGA-AA-3984-01 20 39704921 39704921 G A TOP1 Missense_Mutation p.R89Q 0.15 tolerated_low_confidence(0.07) unknown(0) TCGA-AA-3984-01 20 39974594 39974594 C A LPIN3 Missense_Mutation p.R51S 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 20 39991204 39991204 C T EMILIN3 Silent p.Q335Q 0.33 TCGA-AA-3984-01 20 40080527 40080527 G T CHD6 Missense_Mutation p.F1154L 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 20 40730859 40730859 G A PTPRT Nonsense_Mutation p.R1207* 0.20 TCGA-AA-3984-01 20 40944417 40944417 G T PTPRT Silent p.L695L 0.21 TCGA-AA-3984-01 20 42826156 42826156 C T OSER1 Missense_Mutation p.D139N 0.30 tolerated(0.12) benign(0.014) TCGA-AA-3984-01 20 43128834 43128834 A G SERINC3 3'UTR 0.48 TCGA-AA-3984-01 20 43257690 43257690 G A ADA Silent p.I72I 0.10 TCGA-AA-3984-01 20 43547826 43547826 A C PABPC1L Missense_Mutation p.K216Q 0.16 tolerated(0.19) possibly_damaging(0.9) TCGA-AA-3984-01 20 43610567 43610567 C T STK4 Nonsense_Mutation p.R115* 0.07 TCGA-AA-3984-01 20 43851702 43851702 C T SEMG2 Nonsense_Mutation p.R477* 0.06 TCGA-AA-3984-01 20 44174595 44174595 G T EPPIN Intron 0.39 TCGA-AA-3984-01 20 44277896 44277896 G A WFDC11 Silent p.V81V 0.05 TCGA-AA-3984-01 20 44586256 44586256 G A ZNF335 Missense_Mutation p.A804V 0.17 tolerated(0.07) benign(0.06) TCGA-AA-3984-01 20 44596612 44596612 G A ZNF335 Missense_Mutation p.A192V 0.09 tolerated_low_confidence(0.12) benign(0.297) TCGA-AA-3984-01 20 44642311 44642311 C A MMP9 Missense_Mutation p.F542L 0.16 tolerated(0.76) benign(0.002) TCGA-AA-3984-01 20 44678338 44678338 A G SLC12A5 Missense_Mutation p.Q720R 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 20 44685535 44685535 G A SLC12A5 Splice_Site p.X1060_splice 0.43 TCGA-AA-3984-01 20 44839140 44839140 G T CDH22 Missense_Mutation p.F364L 0.20 deleterious(0.04) benign(0.227) TCGA-AA-3984-01 20 44869816 44869816 G A CDH22 Silent p.I112I 0.16 TCGA-AA-3984-01 20 45170002 45170002 C T OCSTAMP Missense_Mutation p.D538N 0.28 tolerated_low_confidence(0.08) benign(0.003) TCGA-AA-3984-01 20 45315427 45315427 G A TP53RK Missense_Mutation p.R243C 0.08 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 20 46292317 46292317 G A SULF2 Missense_Mutation p.R703C 0.17 deleterious(0) probably_damaging(0.932) TCGA-AA-3984-01 20 468108 468108 C T CSNK2A1 Silent p.R312R 0.21 TCGA-AA-3984-01 20 4707226 4707226 C A PRND 3'UTR 0.18 TCGA-AA-3984-01 20 4707888 4707888 C A PRND 3'UTR 0.21 TCGA-AA-3984-01 20 4708180 4708180 C T PRND 3'UTR 0.08 TCGA-AA-3984-01 20 47364404 47364404 C T PREX1 Missense_Mutation p.R78H 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 20 47604882 47604882 C T ARFGEF2 Missense_Mutation p.A773V 0.10 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 20 47641854 47641854 A G ARFGEF2 Missense_Mutation p.D1587G 0.26 deleterious(0.04) benign(0.003) TCGA-AA-3984-01 20 4766895 4766895 A G RASSF2 Missense_Mutation p.V298A 0.08 deleterious(0) possibly_damaging(0.64) TCGA-AA-3984-01 20 4768358 4768358 C T RASSF2 Missense_Mutation p.R245Q 0.13 deleterious(0) probably_damaging(0.939) TCGA-AA-3984-01 20 4776525 4776525 C T RASSF2 Missense_Mutation p.E75K 0.09 deleterious(0) benign(0.434) TCGA-AA-3984-01 20 478371 478371 A C CSNK2A1 Missense_Mutation p.I140M 0.08 deleterious(0) possibly_damaging(0.882) TCGA-AA-3984-01 20 47853036 47853036 T C DDX27 Missense_Mutation p.I590T 0.23 deleterious(0.03) benign(0.01) TCGA-AA-3984-01 20 47863696 47863696 G A ZNFX1 3'UTR 0.11 TCGA-AA-3984-01 20 47869364 47869364 G A ZNFX1 Missense_Mutation p.R1037C 0.26 deleterious(0.02) benign(0.098) TCGA-AA-3984-01 20 48252761 48252761 C T B4GALT5 3'UTR 0.22 TCGA-AA-3984-01 20 4842650 4842650 G A SLC23A2 Missense_Mutation p.S523L 0.23 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 20 4880329 4880329 G A SLC23A2 Silent p.I118I 0.10 TCGA-AA-3984-01 20 49196402 49196402 G A PTPN1 Missense_Mutation p.D343N 0.19 tolerated(0.44) benign(0.103) TCGA-AA-3984-01 20 49218905 49218905 G T FAM65C Missense_Mutation p.L451I 0.14 tolerated(0.17) benign(0.019) TCGA-AA-3984-01 20 49508542 49508542 G T ADNP Silent p.I903I 0.17 TCGA-AA-3984-01 20 49509362 49509362 A G ADNP Missense_Mutation p.I630T 0.25 tolerated(0.4) benign(0.255) TCGA-AA-3984-01 20 49520437 49520437 C A ADNP Nonsense_Mutation p.E33* 0.23 TCGA-AA-3984-01 20 49620612 49620612 G A KCNG1 Silent p.F502F 0.16 TCGA-AA-3984-01 20 50701669 50701669 C T ZFP64 Silent p.A455A 0.18 TCGA-AA-3984-01 20 51871293 51871293 G C TSHZ2 Missense_Mutation p.L432F 0.22 deleterious(0) possibly_damaging(0.876) TCGA-AA-3984-01 20 52188349 52188349 T G ZNF217 Silent p.A1027A 0.22 TCGA-AA-3984-01 20 52561414 52561414 A G BCAS1 3'UTR 0.22 TCGA-AA-3984-01 20 5282877 5282877 C T PROKR2 Missense_Mutation p.A322T 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 20 53266981 53266981 G A DOK5 Missense_Mutation p.R295Q 0.22 deleterious_low_confidence(0.01) benign(0.042) TCGA-AA-3984-01 20 55027706 55027706 G A CASS4 Missense_Mutation p.E492K 0.20 tolerated(0.06) possibly_damaging(0.588) TCGA-AA-3984-01 20 55099879 55099879 A C FAM209A Missense_Mutation p.K5N 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-AA-3984-01 20 55212870 55212870 A G TFAP2C Missense_Mutation p.N385S 0.18 tolerated(0.16) benign(0.009) TCGA-AA-3984-01 20 5560680 5560680 C A GPCPD1 Missense_Mutation p.K149N 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-AA-3984-01 20 5565054 5565054 C T GPCPD1 Intron 0.11 TCGA-AA-3984-01 20 55803340 55803340 C T BMP7 Missense_Mutation p.D186N 0.08 tolerated(0.43) benign(0.046) TCGA-AA-3984-01 20 56093875 56093875 C T CTCFL Missense_Mutation p.R333H 0.10 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 20 56094431 56094431 C T CTCFL Missense_Mutation p.A253T 0.12 tolerated(0.58) benign(0.012) TCGA-AA-3984-01 20 56185393 56185393 G A ZBP1 Missense_Mutation p.S302L 0.15 tolerated(0.17) benign(0.001) TCGA-AA-3984-01 20 56190090 56190090 C A ZBP1 Missense_Mutation p.D119Y 0.22 tolerated(0.08) probably_damaging(0.975) TCGA-AA-3984-01 20 56821290 56821290 C T PPP4R1L Silent p.K181K 0.29 TCGA-AA-3984-01 20 57045759 57045759 G A APCDD1L Missense_Mutation p.R32C 0.28 deleterious(0.03) possibly_damaging(0.629) TCGA-AA-3984-01 20 57766789 57766789 G A ZNF831 Missense_Mutation p.E239K 0.32 tolerated(0.44) benign(0.006) TCGA-AA-3984-01 20 57896184 57896184 G A EDN3 Missense_Mutation p.A160T 0.11 tolerated(0.32) benign(0.003) TCGA-AA-3984-01 20 58416493 58416493 T A PHACTR3 Missense_Mutation p.I497N 0.09 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 20 58416515 58416515 C T PHACTR3 Silent p.Y504Y 0.26 TCGA-AA-3984-01 20 58439326 58439326 G T SYCP2 3'UTR 0.21 TCGA-AA-3984-01 20 58606440 58606440 G A CDH26 Missense_Mutation p.R368Q 0.21 deleterious_low_confidence(0.01) benign(0.412) TCGA-AA-3984-01 20 5896971 5896971 G T CHGB Splice_Site p.X17_splice 0.08 TCGA-AA-3984-01 20 6011955 6011955 C T CRLS1 Missense_Mutation p.S200L 0.11 tolerated(0.69) benign(0.028) TCGA-AA-3984-01 20 6011999 6011999 C T CRLS1 Nonsense_Mutation p.R215* 0.27 TCGA-AA-3984-01 20 60503423 60503423 C T CDH4 Silent p.F649F 0.55 TCGA-AA-3984-01 20 60754449 60754449 C T SS18L1 3'UTR 0.21 TCGA-AA-3984-01 20 60991859 60991859 G A RBBP8NL Silent p.F90F 0.25 TCGA-AA-3984-01 20 61039962 61039962 G A GATA5 Missense_Mutation p.A375V 0.25 tolerated(0.06) benign(0.017) TCGA-AA-3984-01 20 61488887 61488887 G A TCFL5 Silent p.G366G 0.21 TCGA-AA-3984-01 20 61511641 61511641 G A DIDO1 Silent p.F1889F 0.15 TCGA-AA-3984-01 20 61828073 61828073 C T YTHDF1 Missense_Mutation p.R556Q 0.14 tolerated_low_confidence(0.05) benign(0.007) TCGA-AA-3984-01 20 62046275 62046275 C T KCNQ2 Silent p.A502A 0.23 TCGA-AA-3984-01 20 62126445 62126445 C T EEF1A2 Missense_Mutation p.A112T 0.27 deleterious_low_confidence(0.01) benign(0.181) TCGA-AA-3984-01 20 62196574 62196574 C T HELZ2 Missense_Mutation p.E1201K 0.13 tolerated(0.08) benign(0.116) TCGA-AA-3984-01 20 62226996 62226996 C T GMEB2 Missense_Mutation p.E196K 0.12 tolerated(0.11) possibly_damaging(0.742) TCGA-AA-3984-01 20 62577253 62577253 C T UCKL1 Missense_Mutation p.D163N 0.06 tolerated(0.06) benign(0.029) TCGA-AA-3984-01 20 62598758 62598758 C A ZNF512B Missense_Mutation p.E80D 0.14 tolerated(0.11) possibly_damaging(0.613) TCGA-AA-3984-01 20 62839042 62839042 G A MYT1 Missense_Mutation p.A165T 0.28 benign(0.026) TCGA-AA-3984-01 20 62839225 62839225 G A MYT1 Missense_Mutation p.E226K 0.26 benign(0) TCGA-AA-3984-01 20 746388 746388 C T SLC52A3 Missense_Mutation p.V11I 0.13 tolerated(0.49) benign(0) TCGA-AA-3984-01 20 7894944 7894944 C T HAO1 Missense_Mutation p.E138K 0.09 tolerated(0.29) benign(0.038) TCGA-AA-3984-01 20 8665634 8665634 C T PLCB1 Silent p.V306V 0.08 TCGA-AA-3984-01 20 9382163 9382163 G A PLCB4 Missense_Mutation p.E513K 0.12 tolerated(0.13) benign(0.08) TCGA-AA-3984-01 21 10908892 10908892 G T TPTE Missense_Mutation p.L485I 0.09 tolerated(0.15) possibly_damaging(0.531) TCGA-AA-3984-01 21 10910308 10910308 G A TPTE Missense_Mutation p.S483L 0.12 tolerated(0.11) benign(0.031) TCGA-AA-3984-01 21 10951369 10951369 A G TPTE Missense_Mutation p.F115L 0.14 tolerated(0.74) benign(0.004) TCGA-AA-3984-01 21 10996106 10996106 C T TPTE RNA 0.12 TCGA-AA-3984-01 21 11039005 11039005 A C BAGE2 RNA 0.06 TCGA-AA-3984-01 21 15554168 15554168 G T LIPI Missense_Mutation p.A206D 0.22 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 21 15593424 15593424 C A RBM11 Missense_Mutation p.S89Y 0.12 deleterious(0.04) benign(0.124) TCGA-AA-3984-01 21 15872967 15872967 A C SAMSN1 Missense_Mutation p.I285M 0.06 deleterious(0) probably_damaging(0.959) TCGA-AA-3984-01 21 15893519 15893519 G A SAMSN1 Silent p.F95F 0.07 TCGA-AA-3984-01 21 16339912 16339912 G A NRIP1 Missense_Mutation p.T201M 0.30 deleterious(0.01) possibly_damaging(0.702) TCGA-AA-3984-01 21 17250704 17250704 G A USP25 Silent p.P1026P 0.28 TCGA-AA-3984-01 21 18965512 18965512 A C BTG3 3'Flank 0.12 TCGA-AA-3984-01 21 19770558 19770558 G T TMPRSS15 Silent p.L78L 0.32 TCGA-AA-3984-01 21 27071113 27071113 C T JAM2 Silent p.I173I 0.29 TCGA-AA-3984-01 21 27852622 27852622 C T CYYR1 Silent p.T101T 0.10 TCGA-AA-3984-01 21 28210293 28210293 T C ADAMTS1 Missense_Mutation p.K837E 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 21 28214980 28214980 C T ADAMTS1 Missense_Mutation p.R252Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 21 28338171 28338171 G A ADAMTS5 Silent p.R180R 0.33 TCGA-AA-3984-01 21 30316762 30316762 C A LTN1 Nonsense_Mutation p.E1355* 0.12 TCGA-AA-3984-01 21 30380774 30380774 C T RWDD2B Missense_Mutation p.R79Q 0.27 tolerated(0.27) benign(0.295) TCGA-AA-3984-01 21 30419148 30419148 A C USP16 Missense_Mutation p.K506T 0.28 tolerated(0.18) benign(0.005) TCGA-AA-3984-01 21 30441792 30441792 C T CCT8 Silent p.E61E 0.30 TCGA-AA-3984-01 21 30699652 30699652 G A BACH1 Missense_Mutation p.D503N 0.35 deleterious(0) probably_damaging(0.974) TCGA-AA-3984-01 21 30701851 30701851 G A BACH1 Missense_Mutation p.R538Q 0.08 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 21 30968863 30968863 A G GRIK1 Missense_Mutation p.Y412H 0.28 tolerated_low_confidence(0.53) benign(0.004) TCGA-AA-3984-01 21 31874355 31874355 G A KRTAP19-5 Silent p.F18F 0.30 TCGA-AA-3984-01 21 31971133 31971133 C T KRTAP6-2 Missense_Mutation p.E21K 0.29 unknown(0) TCGA-AA-3984-01 21 32595821 32595821 C T TIAM1 Silent p.E632E 0.16 TCGA-AA-3984-01 21 33065741 33065741 C T SCAF4 Missense_Mutation p.R460Q 0.16 benign(0.238) TCGA-AA-3984-01 21 33984429 33984429 T C C21orf59 Missense_Mutation p.Q42R 0.19 tolerated(0.47) benign(0.013) TCGA-AA-3984-01 21 34045731 34045731 G A SYNJ1 Missense_Mutation p.R588C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 21 34045776 34045776 G A SYNJ1 Nonsense_Mutation p.R573* 0.11 TCGA-AA-3984-01 21 34443676 34443676 C T OLIG1 3'UTR 0.28 TCGA-AA-3984-01 21 34537843 34537843 C A C21orf54 3'UTR 0.25 TCGA-AA-3984-01 21 34861248 34861248 C T DNAJC28 Silent p.E151E 0.33 TCGA-AA-3984-01 21 34922440 34922440 G A SON Silent p.E301E 0.41 TCGA-AA-3984-01 21 35469122 35469122 G A SLC5A3 Missense_Mutation p.R542Q 0.16 tolerated(0.31) benign(0.004) TCGA-AA-3984-01 21 35473163 35473163 G A SLC5A3 3'UTR 0.32 TCGA-AA-3984-01 21 35474136 35474136 G A SLC5A3 3'UTR 0.15 TCGA-AA-3984-01 21 35743238 35743238 G A KCNE2 3'UTR 0.32 TCGA-AA-3984-01 21 37093042 37093042 T G MIR802 RNA 0.28 TCGA-AA-3984-01 21 37417910 37417910 C T SETD4 Silent p.L232L 0.38 TCGA-AA-3984-01 21 37618397 37618397 C A DOPEY2 Missense_Mutation p.F1373L 0.32 tolerated(0.08) benign(0.022) TCGA-AA-3984-01 21 37635868 37635868 G T DOPEY2 Missense_Mutation p.E1780D 0.09 tolerated(0.89) benign(0.02) TCGA-AA-3984-01 21 38302646 38302646 C T HLCS Missense_Mutation p.E362K 0.11 deleterious(0.02) benign(0.437) TCGA-AA-3984-01 21 38605679 38605679 A C DSCR3 Missense_Mutation p.F139C 0.15 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 21 38853010 38853010 G A DYRK1A Missense_Mutation p.R133Q 0.28 deleterious(0.03) possibly_damaging(0.801) TCGA-AA-3984-01 21 38997399 38997399 G T KCNJ6 3'UTR 0.25 TCGA-AA-3984-01 21 39672120 39672120 C T KCNJ15 Missense_Mutation p.P313S 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-AA-3984-01 21 39672562 39672562 C A KCNJ15 3'UTR 0.34 TCGA-AA-3984-01 21 40604127 40604127 C T BRWD1 Silent p.E992E 0.22 TCGA-AA-3984-01 21 40871838 40871838 G T SH3BGR Missense_Mutation p.K197N 0.14 tolerated_low_confidence(0.13) unknown(0) TCGA-AA-3984-01 21 40978027 40978027 C T C21orf88 Intron 0.29 TCGA-AA-3984-01 21 41143050 41143050 G T IGSF5 Missense_Mutation p.S209I 0.13 deleterious(0) possibly_damaging(0.824) TCGA-AA-3984-01 21 41465755 41465755 A C DSCAM Missense_Mutation p.I1248S 0.08 deleterious(0) probably_damaging(0.965) TCGA-AA-3984-01 21 41648131 41648131 G T DSCAM Nonsense_Mutation p.S750* 0.20 TCGA-AA-3984-01 21 43413325 43413325 C A ZBTB21 Nonsense_Mutation p.E294* 0.32 TCGA-AA-3984-01 21 43645992 43645992 C T ABCG1 Missense_Mutation p.S85L 0.26 deleterious(0.01) benign(0.28) TCGA-AA-3984-01 21 43702460 43702460 G A ABCG1 Missense_Mutation p.R222H 0.31 deleterious(0.05) probably_damaging(0.988) TCGA-AA-3984-01 21 45076611 45076611 C T HSF2BP Missense_Mutation p.G15E 0.08 tolerated(0.6) probably_damaging(0.998) TCGA-AA-3984-01 21 45092246 45092246 C T RRP1B Nonsense_Mutation p.Q91* 0.22 TCGA-AA-3984-01 21 45402199 45402199 C T AGPAT3 Missense_Mutation p.R353C 0.18 deleterious(0) possibly_damaging(0.856) TCGA-AA-3984-01 21 45499456 45499456 C T TRAPPC10 Missense_Mutation p.A494V 0.36 tolerated(0.09) benign(0) TCGA-AA-3984-01 21 45811175 45811175 G A TRPM2 Silent p.T487T 0.20 TCGA-AA-3984-01 21 45819222 45819222 G T TRPM2 Missense_Mutation p.Q702H 0.24 tolerated(0.06) probably_damaging(0.971) TCGA-AA-3984-01 21 45941818 45941818 G A TSPEAR Missense_Mutation p.S505L 0.27 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 21 45941994 45941994 G A TSPEAR Silent p.G446G 0.33 TCGA-AA-3984-01 21 45947241 45947241 G A TSPEAR Silent p.F361F 0.27 TCGA-AA-3984-01 21 46131489 46131489 C T TSPEAR 5'UTR 0.36 TCGA-AA-3984-01 21 46354063 46354063 C T C21orf67 3'Flank 0.33 TCGA-AA-3984-01 21 47532246 47532246 G A COL6A2 Missense_Mutation p.A157T 0.14 tolerated(0.05) probably_damaging(0.957) TCGA-AA-3984-01 21 47571627 47571627 C T FTCD Missense_Mutation p.D161N 0.33 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 21 47706981 47706981 A C YBEY Silent p.R52R 0.31 TCGA-AA-3984-01 22 16449709 16449709 G T OR11H1 Missense_Mutation p.F32L 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 22 17071766 17071766 A C CCT8L2 3'UTR 0.07 TCGA-AA-3984-01 22 17071818 17071818 C A CCT8L2 Missense_Mutation p.K541N 0.27 tolerated(0.05) benign(0.243) TCGA-AA-3984-01 22 17288719 17288719 T G XKR3 Missense_Mutation p.Q82P 0.09 deleterious(0) possibly_damaging(0.803) TCGA-AA-3984-01 22 17488859 17488859 G A GAB4 Missense_Mutation p.S49L 0.14 tolerated(0.09) possibly_damaging(0.651) TCGA-AA-3984-01 22 17600226 17600226 A C CECR6 3'UTR 0.38 TCGA-AA-3984-01 22 17618902 17618902 G A CECR5 3'UTR 0.20 TCGA-AA-3984-01 22 17663530 17663530 C A CECR1 Missense_Mutation p.K401N 0.20 deleterious(0.03) benign(0.086) TCGA-AA-3984-01 22 18371995 18371995 C A MICAL3 Missense_Mutation p.D566Y 0.19 probably_damaging(0.998) TCGA-AA-3984-01 22 18570908 18570908 G A PEX26 3'UTR 0.20 TCGA-AA-3984-01 22 18653569 18653569 G A USP18 Missense_Mutation p.R258Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 22 18778620 18778620 G C GGT3P RNA 0.13 TCGA-AA-3984-01 22 19211514 19211514 T C CLTCL1 Missense_Mutation p.Y731C 0.10 deleterious(0) probably_damaging(0.991) TCGA-AA-3984-01 22 19241746 19241746 C T CLTCL1 Silent p.G85G 0.29 TCGA-AA-3984-01 22 19766991 19766991 T C GNB1L 3'Flank 0.35 TCGA-AA-3984-01 22 19808172 19808172 C T GNB1L Missense_Mutation p.G68D 0.36 deleterious(0) benign(0.21) TCGA-AA-3984-01 22 19865644 19865644 C T TXNRD2 Missense_Mutation p.E472K 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 22 20114501 20114501 G A RANBP1 Missense_Mutation p.E178K 0.25 tolerated(0.27) benign(0.027) TCGA-AA-3984-01 22 20302311 20302311 G A DGCR6L Nonsense_Mutation p.R184* 0.24 TCGA-AA-3984-01 22 20458115 20458115 C T RIMBP3 Missense_Mutation p.D1063N 0.13 tolerated(0.06) possibly_damaging(0.517) TCGA-AA-3984-01 22 21188862 21188862 G A PI4KA Missense_Mutation p.R119W 0.27 tolerated(0.19) benign(0.006) TCGA-AA-3984-01 22 21242113 21242113 C T SNAP29 Nonsense_Mutation p.R256* 0.31 TCGA-AA-3984-01 22 21363251 21363251 G A AC002472.1 5'Flank 0.34 TCGA-AA-3984-01 22 21401745 21401745 C T AC002472.13 Silent p.S80S 0.12 TCGA-AA-3984-01 22 21965222 21965222 A C UBE2L3 Missense_Mutation p.K125T 0.31 tolerated(0.19) possibly_damaging(0.867) TCGA-AA-3984-01 22 22051160 22051160 A G PPIL2 Intron 0.32 TCGA-AA-3984-01 22 22842637 22842637 C T ZNF280B Missense_Mutation p.E363K 0.25 deleterious(0) possibly_damaging(0.449) TCGA-AA-3984-01 22 22930983 22930983 C T IGLV2-33 Missense_Mutation p.R60C 0.24 tolerated_low_confidence(0.15) benign(0.012) TCGA-AA-3984-01 22 23063352 23063352 C A IGLV3-19 Missense_Mutation p.S20Y 0.33 deleterious(0.03) probably_damaging(0.978) TCGA-AA-3984-01 22 23090207 23090207 A T IGLV3-16 Missense_Mutation p.K49I 0.26 tolerated(0.1) benign(0.005) TCGA-AA-3984-01 22 23165614 23165614 G A IGLV2-8 Missense_Mutation p.G62D 0.33 deleterious_low_confidence(0.03) benign(0.397) TCGA-AA-3984-01 22 23401714 23401714 C T RTDR1 Missense_Mutation p.E325K 0.13 tolerated(0.53) benign(0.305) TCGA-AA-3984-01 22 23503776 23503776 G A RAB36 3'UTR 0.25 TCGA-AA-3984-01 22 23654016 23654016 C T BCR Silent p.F1105F 0.26 TCGA-AA-3984-01 22 24026010 24026010 C T KB-1572G7.2 RNA 0.23 TCGA-AA-3984-01 22 24125731 24125731 A G MMP11 Nonstop_Mutation p.*489Wext*10 0.11 TCGA-AA-3984-01 22 24451419 24451419 G T CABIN1 Missense_Mutation p.R297M 0.09 deleterious(0) possibly_damaging(0.681) TCGA-AA-3984-01 22 24567818 24567818 G A CABIN1 Silent p.K1965K 0.23 TCGA-AA-3984-01 22 24583706 24583706 C A SUSD2 Missense_Mutation p.H687N 0.26 tolerated(0.57) benign(0.002) TCGA-AA-3984-01 22 24584250 24584250 C T SUSD2 Missense_Mutation p.A800V 0.43 tolerated(0.4) benign(0.002) TCGA-AA-3984-01 22 25150184 25150184 A G PIWIL3 Silent p.G258G 0.18 TCGA-AA-3984-01 22 25301096 25301096 C T SGSM1 Silent p.I975I 0.30 TCGA-AA-3984-01 22 25961100 25961100 G A ADRBK2 Silent p.R31R 0.19 TCGA-AA-3984-01 22 26164945 26164945 G T MYO18B Missense_Mutation p.Q354H 0.32 tolerated_low_confidence(0.09) benign(0.353) TCGA-AA-3984-01 22 26222414 26222414 G A MYO18B Missense_Mutation p.A912T 0.34 deleterious(0) probably_damaging(0.976) TCGA-AA-3984-01 22 26399266 26399266 G A MYO18B Missense_Mutation p.R2108Q 0.08 tolerated(0.47) benign(0.004) TCGA-AA-3984-01 22 26688839 26688839 C T SEZ6L Nonsense_Mutation p.R188* 0.25 TCGA-AA-3984-01 22 26688897 26688897 C T SEZ6L Missense_Mutation p.S207L 0.31 tolerated(0.29) benign(0.003) TCGA-AA-3984-01 22 26761393 26761393 C T SEZ6L Silent p.I885I 0.31 TCGA-AA-3984-01 22 26771560 26771560 G T SEZ6L Missense_Mutation p.E949D 0.22 tolerated(0.4) benign(0.026) TCGA-AA-3984-01 22 28195736 28195736 G A MN1 Missense_Mutation p.P266S 0.31 probably_damaging(0.986) TCGA-AA-3984-01 22 28292602 28292602 T G PITPNB Missense_Mutation p.K104Q 0.38 tolerated(0.05) possibly_damaging(0.489) TCGA-AA-3984-01 22 28379441 28379441 C A TTC28 Nonsense_Mutation p.E2072* 0.32 TCGA-AA-3984-01 22 28394456 28394456 G T TTC28 Intron 0.33 TCGA-AA-3984-01 22 28397458 28397458 G A TTC28 Silent p.F1434F 0.10 TCGA-AA-3984-01 22 28501697 28501697 G A TTC28 Silent p.A959A 0.26 TCGA-AA-3984-01 22 28503422 28503422 T C TTC28 Missense_Mutation p.Y804C 0.32 deleterious(0) probably_damaging(0.976) TCGA-AA-3984-01 22 29191294 29191294 C T XBP1 3'UTR 0.13 TCGA-AA-3984-01 22 29449696 29449696 T G ZNRF3 3'UTR 0.23 TCGA-AA-3984-01 22 29538156 29538156 T C KREMEN1 Intron 0.41 TCGA-AA-3984-01 22 30770023 30770023 G A CCDC157 Missense_Mutation p.E539K 0.10 deleterious(0) probably_damaging(0.991) TCGA-AA-3984-01 22 32111849 32111849 T A PRR14L Missense_Mutation p.N659I 0.09 deleterious(0) possibly_damaging(0.839) TCGA-AA-3984-01 22 32831765 32831765 C T BPIFC Missense_Mutation p.E284K 0.31 tolerated(0.09) benign(0.038) TCGA-AA-3984-01 22 32880054 32880054 T C FBXO7 Silent p.N196N 0.17 TCGA-AA-3984-01 22 32881061 32881061 G A FBXO7 Missense_Mutation p.E218K 0.26 deleterious(0.01) possibly_damaging(0.655) TCGA-AA-3984-01 22 32937555 32937555 A G SYN3 Splice_Site p.X306_splice 0.23 TCGA-AA-3984-01 22 33670313 33670313 G A LARGE 3'UTR 0.45 TCGA-AA-3984-01 22 36627409 36627409 G A APOL2 Silent p.F38F 0.31 TCGA-AA-3984-01 22 36960558 36960558 T C CACNG2 Missense_Mutation p.Y271C 0.26 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 22 37578258 37578258 G A C1QTNF6 Silent p.S269S 0.31 TCGA-AA-3984-01 22 37876261 37876261 G A MFNG Silent p.F127F 0.24 TCGA-AA-3984-01 22 38042882 38042882 G A SH3BP1 Missense_Mutation p.A328T 0.19 tolerated(0.12) benign(0.219) TCGA-AA-3984-01 22 38119558 38119558 C T TRIOBP Missense_Mutation p.A332V 0.30 tolerated_low_confidence(0.38) benign(0.058) TCGA-AA-3984-01 22 38208981 38208981 G A GCAT Missense_Mutation p.A165T 0.27 tolerated(0.14) benign(0.117) TCGA-AA-3984-01 22 38612503 38612503 T G MAFF 3'UTR 0.11 TCGA-AA-3984-01 22 38643773 38643773 T C TMEM184B Intron 0.12 TCGA-AA-3984-01 22 38695925 38695925 G A CSNK1E Silent p.I237I 0.27 TCGA-AA-3984-01 22 38823557 38823557 G A KCNJ4 Missense_Mutation p.S194L 0.31 deleterious(0) probably_damaging(0.943) TCGA-AA-3984-01 22 39222576 39222576 G A NPTXR Missense_Mutation p.P343S 0.21 deleterious(0.01) benign(0.395) TCGA-AA-3984-01 22 39262280 39262280 G A CBX6 Silent p.F391F 0.31 TCGA-AA-3984-01 22 39413791 39413791 T C APOBEC3C Silent p.C65C 0.27 TCGA-AA-3984-01 22 39475004 39475004 C T APOBEC3G Missense_Mutation p.R29C 0.26 deleterious(0.02) possibly_damaging(0.901) TCGA-AA-3984-01 22 39483578 39483578 C A APOBEC3G 3'UTR 0.12 TCGA-AA-3984-01 22 40139873 40139873 C A ENTHD1 Missense_Mutation p.K545N 0.33 tolerated(1) benign(0) TCGA-AA-3984-01 22 40815063 40815063 C T MKL1 Missense_Mutation p.R460H 0.26 tolerated(0.08) probably_damaging(0.984) TCGA-AA-3984-01 22 41513675 41513675 C T EP300 Silent p.N193N 0.20 TCGA-AA-3984-01 22 41605668 41605668 C A L3MBTL2 Intron 0.11 TCGA-AA-3984-01 22 41633657 41633657 G T CHADL Silent p.G473G 0.34 TCGA-AA-3984-01 22 42092843 42092843 C T C22orf46 3'UTR 0.36 TCGA-AA-3984-01 22 42174715 42174715 C T MEI1 Missense_Mutation p.S905L 0.29 tolerated(0.16) benign(0.004) TCGA-AA-3984-01 22 42180645 42180645 G A MEI1 Missense_Mutation p.R1068Q 0.38 tolerated(0.83) benign(0.002) TCGA-AA-3984-01 22 42190462 42190462 T G MEI1 Missense_Mutation p.I1172S 0.30 deleterious(0) possibly_damaging(0.626) TCGA-AA-3984-01 22 42191416 42191416 T G MEI1 Missense_Mutation p.F1179C 0.34 deleterious(0) probably_damaging(0.935) TCGA-AA-3984-01 22 42301699 42301699 C T SREBF2 3'UTR 0.25 TCGA-AA-3984-01 22 42475147 42475147 G A FAM109B 3'UTR 0.29 TCGA-AA-3984-01 22 42998970 42998970 G A POLDIP3 Nonsense_Mutation p.R86* 0.26 TCGA-AA-3984-01 22 43193531 43193531 G T ARFGAP3 3'UTR 0.31 TCGA-AA-3984-01 22 43442423 43442423 C T TTLL1 Missense_Mutation p.E379K 0.26 tolerated(0.07) benign(0.064) TCGA-AA-3984-01 22 44583730 44583730 C T PARVG Silent p.F73F 0.10 TCGA-AA-3984-01 22 46654189 46654189 G A PKDREJ Silent p.I1677I 0.32 TCGA-AA-3984-01 22 46656825 46656825 G A PKDREJ Nonsense_Mutation p.R799* 0.30 TCGA-AA-3984-01 22 47857395 47857395 G A LL22NC03-75H12.2 3'UTR 0.15 TCGA-AA-3984-01 22 50169245 50169245 C A BRD1 Missense_Mutation p.R996I 0.14 deleterious(0) probably_damaging(0.95) TCGA-AA-3984-01 22 50537909 50537909 G A MOV10L1 Missense_Mutation p.R107K 0.10 tolerated(1) benign(0.001) TCGA-AA-3984-01 2 100020955 100020955 C T REV1 Silent p.S999S 0.26 TCGA-AA-3984-01 2 100052367 100052367 C T REV1 Missense_Mutation p.S417N 0.23 tolerated(0.14) benign(0.011) TCGA-AA-3984-01 2 100903478 100903478 C T LONRF2 Silent p.V656V 0.13 TCGA-AA-3984-01 2 101095815 101095815 T G NMS Missense_Mutation p.F88V 0.29 tolerated(0.48) benign(0.004) TCGA-AA-3984-01 2 101652580 101652580 G A TBC1D8 Silent p.Y486Y 0.07 TCGA-AA-3984-01 2 102818025 102818025 G A IL1RL2 Missense_Mutation p.E167K 0.23 tolerated(0.44) possibly_damaging(0.453) TCGA-AA-3984-01 2 102965671 102965671 T C IL1RL1 Missense_Mutation p.L417S 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 102998082 102998082 C T IL18R1 Missense_Mutation p.R210C 0.06 tolerated(0.06) benign(0.306) TCGA-AA-3984-01 2 103059714 103059714 A G IL18RAP Missense_Mutation p.N284S 0.25 tolerated(0.68) benign(0.044) TCGA-AA-3984-01 2 103125390 103125390 C T SLC9A4 Missense_Mutation p.R496C 0.08 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 2 103340183 103340183 A C MFSD9 Missense_Mutation p.F205V 0.43 tolerated(0.16) benign(0.216) TCGA-AA-3984-01 2 105708874 105708874 C T MRPS9 Missense_Mutation p.R223W 0.25 deleterious(0.01) possibly_damaging(0.677) TCGA-AA-3984-01 2 106002940 106002940 C T FHL2 Missense_Mutation p.E12K 0.11 tolerated(0.3) benign(0.001) TCGA-AA-3984-01 2 107021559 107021559 G T RGPD3 3'UTR 0.27 TCGA-AA-3984-01 2 107040297 107040297 C A RGPD3 Nonsense_Mutation p.E1376* 0.34 TCGA-AA-3984-01 2 107450509 107450509 G A ST6GAL2 Missense_Mutation p.S346L 0.23 probably_damaging(1) TCGA-AA-3984-01 2 108443438 108443438 T G RGPD4 5'UTR 0.30 TCGA-AA-3984-01 2 108507242 108507242 C T RGPD4 3'UTR 0.07 TCGA-AA-3984-01 2 108881728 108881728 T C SULT1C3 Missense_Mutation p.V279A 0.27 deleterious(0) possibly_damaging(0.853) TCGA-AA-3984-01 2 109380686 109380686 C T RANBP2 Missense_Mutation p.R1231C 0.22 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 2 10942701 10942701 C T PDIA6 Missense_Mutation p.E29K 0.08 deleterious(0.03) possibly_damaging(0.615) TCGA-AA-3984-01 2 110303730 110303730 C A SEPT10 Nonsense_Mutation p.E416* 0.27 TCGA-AA-3984-01 2 110376078 110376078 T G SOWAHC 3'UTR 0.28 TCGA-AA-3984-01 2 11052823 11052823 G A KCNF1 Missense_Mutation p.E91K 0.14 deleterious(0.02) benign(0.433) TCGA-AA-3984-01 2 11053302 11053302 C T KCNF1 Silent p.F250F 0.19 TCGA-AA-3984-01 2 110889315 110889315 A C NPHP1 Missense_Mutation p.F584C 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 2 111431725 111431725 C T BUB1 Missense_Mutation p.E55K 0.20 tolerated(0.84) possibly_damaging(0.725) TCGA-AA-3984-01 2 112940476 112940476 G A FBLN7 Missense_Mutation p.R260Q 0.32 tolerated(0.58) benign(0.004) TCGA-AA-3984-01 2 113057436 113057436 G A ZC3H6 Missense_Mutation p.E15K 0.28 deleterious(0) unknown(0) TCGA-AA-3984-01 2 113069447 113069447 G A ZC3H6 Missense_Mutation p.R227Q 0.09 tolerated(0.1) probably_damaging(0.994) TCGA-AA-3984-01 2 113081887 113081887 G A ZC3H6 Missense_Mutation p.G500E 0.34 deleterious(0) possibly_damaging(0.813) TCGA-AA-3984-01 2 113147748 113147748 C T RGPD8 Missense_Mutation p.G925D 0.17 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 2 114699886 114699886 G A ACTR3 Missense_Mutation p.D270N 0.10 deleterious(0.01) benign(0.264) TCGA-AA-3984-01 2 11770213 11770213 G A GREB1 Missense_Mutation p.R1530Q 0.35 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 2 118575267 118575267 G A DDX18 Silent p.K111K 0.26 TCGA-AA-3984-01 2 118743575 118743575 C T CCDC93 Missense_Mutation p.R197Q 0.28 tolerated(0.21) benign(0.098) TCGA-AA-3984-01 2 11923967 11923967 G A LPIN1 Missense_Mutation p.R475Q 0.28 tolerated(1) benign(0.018) TCGA-AA-3984-01 2 119914509 119914509 C T C1QL2 Missense_Mutation p.A245T 0.19 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 2 120833077 120833077 C G EPB41L5 Missense_Mutation p.Q145E 0.18 deleterious(0.04) benign(0.129) TCGA-AA-3984-01 2 121740294 121740294 C T GLI2 Silent p.F507F 0.29 TCGA-AA-3984-01 2 121747867 121747867 C T GLI2 Silent p.G1459G 0.34 TCGA-AA-3984-01 2 122125272 122125272 G A CLASP1 Missense_Mutation p.R1260W 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 2 125669101 125669101 C T CNTNAP5 Missense_Mutation p.S1237L 0.25 tolerated(0.14) benign(0.022) TCGA-AA-3984-01 2 128028957 128028957 G A ERCC3 Missense_Mutation p.R634C 0.23 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 2 128075798 128075798 C A MAP3K2 Nonsense_Mutation p.E381* 0.12 TCGA-AA-3984-01 2 128081755 128081755 A C MAP3K2 Missense_Mutation p.F247C 0.18 tolerated(0.26) possibly_damaging(0.628) TCGA-AA-3984-01 2 128381885 128381885 G A MYO7B Missense_Mutation p.S1320N 0.23 tolerated(0.08) benign(0.002) TCGA-AA-3984-01 2 128396984 128396984 C T LIMS2 Missense_Mutation p.D324N 0.28 deleterious(0) possibly_damaging(0.892) TCGA-AA-3984-01 2 128460748 128460748 A C WDR33 3'UTR 0.32 TCGA-AA-3984-01 2 128522061 128522061 C T WDR33 Intron 0.29 TCGA-AA-3984-01 2 128757316 128757316 G A SAP130 Silent p.V430V 0.10 TCGA-AA-3984-01 2 12880896 12880896 G T TRIB2 Missense_Mutation p.E336D 0.30 tolerated(0.3) benign(0.005) TCGA-AA-3984-01 2 130738359 130738359 C A RAB6C Missense_Mutation p.S224Y 0.23 deleterious_low_confidence(0) benign(0) TCGA-AA-3984-01 2 130832876 130832876 G T POTEF Silent p.G723G 0.25 TCGA-AA-3984-01 2 130878020 130878020 C A POTEF Missense_Mutation p.K23N 0.10 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-AA-3984-01 2 130951926 130951926 C A TUBA3E Missense_Mutation p.K163N 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-3984-01 2 131103171 131103171 G A IMP4 Missense_Mutation p.R113Q 0.17 tolerated(0.06) benign(0.298) TCGA-AA-3984-01 2 131486881 131486881 T G GPR148 Missense_Mutation p.F53V 0.22 tolerated(0.07) benign(0.026) TCGA-AA-3984-01 2 131520421 131520421 C T AMER3 Missense_Mutation p.S259L 0.36 deleterious(0) probably_damaging(0.955) TCGA-AA-3984-01 2 131524631 131524631 C T AMER3 3'UTR 0.23 TCGA-AA-3984-01 2 131812999 131812999 C T FAM168B Silent p.P107P 0.06 TCGA-AA-3984-01 2 131904269 131904269 G A PLEKHB2 Missense_Mutation p.D206N 0.09 tolerated(0.18) probably_damaging(0.97) TCGA-AA-3984-01 2 131976097 131976097 G A POTEE Missense_Mutation p.S41N 0.29 deleterious_low_confidence(0) benign(0.213) TCGA-AA-3984-01 2 132277860 132277860 C T AC093838.4 RNA 0.21 TCGA-AA-3984-01 2 132480181 132480181 A C C2orf27A 5'UTR 0.35 TCGA-AA-3984-01 2 132919069 132919069 C T ANKRD30BL Silent p.A70A 0.19 TCGA-AA-3984-01 2 132919253 132919253 A G ANKRD30BL Missense_Mutation p.V9A 0.24 tolerated_low_confidence(0.12) benign(0.005) TCGA-AA-3984-01 2 134275112 134275112 A G NCKAP5 5'UTR 0.29 TCGA-AA-3984-01 2 135694522 135694522 C T CCNT2 Silent p.L118L 0.23 TCGA-AA-3984-01 2 135988470 135988470 G A ZRANB3 Nonsense_Mutation p.R523* 0.11 TCGA-AA-3984-01 2 135988495 135988495 G A ZRANB3 Silent p.F514F 0.24 TCGA-AA-3984-01 2 136570187 136570187 G T LCT Missense_Mutation p.L683M 0.10 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 2 136622613 136622613 G T MCM6 Missense_Mutation p.L350I 0.28 deleterious(0.03) possibly_damaging(0.536) TCGA-AA-3984-01 2 137814655 137814655 T G THSD7B Missense_Mutation p.F269V 0.24 tolerated(0.25) possibly_damaging(0.838) TCGA-AA-3984-01 2 139428724 139428724 C T NXPH2 Missense_Mutation p.R188H 0.25 tolerated(0.22) benign(0.055) TCGA-AA-3984-01 2 141004683 141004683 C A LRP1B Missense_Mutation p.K4432N 0.22 benign(0.403) TCGA-AA-3984-01 2 141242921 141242921 G T LRP1B Missense_Mutation p.P3139H 0.26 possibly_damaging(0.893) TCGA-AA-3984-01 2 141250251 141250251 A C LRP1B Missense_Mutation p.F3016V 0.25 benign(0.307) TCGA-AA-3984-01 2 141283813 141283813 C A LRP1B Missense_Mutation p.K2623N 0.27 possibly_damaging(0.728) TCGA-AA-3984-01 2 141298560 141298560 C A LRP1B Nonsense_Mutation p.E2499* 0.20 TCGA-AA-3984-01 2 141299411 141299411 G T LRP1B Missense_Mutation p.L2442I 0.22 benign(0.364) TCGA-AA-3984-01 2 141459770 141459770 C T LRP1B Missense_Mutation p.G2081E 0.08 probably_damaging(0.931) TCGA-AA-3984-01 2 141707944 141707944 T G LRP1B Missense_Mutation p.E999A 0.32 probably_damaging(0.926) TCGA-AA-3984-01 2 144525785 144525785 C T ARHGAP15 3'UTR 0.37 TCGA-AA-3984-01 2 144728298 144728299 - A GTDC1 Frame_Shift_Ins p.K303* 0.20 TCGA-AA-3984-01 2 145157472 145157472 C T ZEB2 Missense_Mutation p.V428I 0.26 tolerated(0.6) benign(0.012) TCGA-AA-3984-01 2 145158777 145158777 C T ZEB2 Missense_Mutation p.R302Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 2 145161532 145161532 C T ZEB2 Missense_Mutation p.R253H 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 148602727 148602727 A G ACVR2A Silent p.G2G 0.12 TCGA-AA-3984-01 2 148677873 148677873 A C ACVR2A Missense_Mutation p.K346T 0.28 tolerated(0.36) possibly_damaging(0.467) TCGA-AA-3984-01 2 148680590 148680590 A C ACVR2A Missense_Mutation p.N376H 0.21 tolerated(0.07) possibly_damaging(0.894) TCGA-AA-3984-01 2 1491667 1491667 G A TPO Missense_Mutation p.E558K 0.11 deleterious(0.03) possibly_damaging(0.73) TCGA-AA-3984-01 2 149227770 149227770 C T MBD5 Missense_Mutation p.P753L 0.09 tolerated(0.12) possibly_damaging(0.851) TCGA-AA-3984-01 2 149818500 149818500 G T KIF5C Missense_Mutation p.K328N 0.33 deleterious(0) possibly_damaging(0.823) TCGA-AA-3984-01 2 150061778 150061778 C T LYPD6B Missense_Mutation p.S30L 0.32 benign(0) TCGA-AA-3984-01 2 152109344 152109344 C A RBM43 Missense_Mutation p.K80N 0.29 deleterious(0.05) possibly_damaging(0.691) TCGA-AA-3984-01 2 152127105 152127105 A C NMI 3'UTR 0.18 TCGA-AA-3984-01 2 152376262 152376262 G A NEB Silent p.F7500F 0.25 TCGA-AA-3984-01 2 152417610 152417610 C A NEB Nonsense_Mutation p.E6372* 0.30 TCGA-AA-3984-01 2 152424583 152424583 A G NEB Splice_Site p.X5948_splice 0.26 TCGA-AA-3984-01 2 152471030 152471030 C T NEB Silent p.P3787P 0.25 TCGA-AA-3984-01 2 152512849 152512849 T C NEB Missense_Mutation p.N2105D 0.08 benign(0.007) TCGA-AA-3984-01 2 152534213 152534213 C T NEB Missense_Mutation p.E1214K 0.19 probably_damaging(0.985) TCGA-AA-3984-01 2 152550935 152550935 C A NEB Missense_Mutation p.D600Y 0.18 probably_damaging(0.967) TCGA-AA-3984-01 2 152552148 152552148 G A NEB Missense_Mutation p.P540S 0.10 probably_damaging(0.998) TCGA-AA-3984-01 2 152563485 152563485 C A NEB Missense_Mutation p.K354N 0.20 probably_damaging(0.924) TCGA-AA-3984-01 2 152663435 152663435 C A ARL5A Nonsense_Mutation p.E131* 0.23 TCGA-AA-3984-01 2 152737389 152737389 G A CACNB4 Silent p.G105G 0.29 TCGA-AA-3984-01 2 152739812 152739812 G A CACNB4 Nonsense_Mutation p.R74* 0.10 TCGA-AA-3984-01 2 153000417 153000417 A C STAM2 Missense_Mutation p.L210V 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3984-01 2 15519956 15519956 C A NBAS Splice_Site p.X1121_splice 0.32 TCGA-AA-3984-01 2 155711470 155711470 A T KCNJ3 Missense_Mutation p.N384I 0.22 tolerated(0.36) benign(0.079) TCGA-AA-3984-01 2 157184480 157184480 C T NR4A2 Silent p.S347S 0.10 TCGA-AA-3984-01 2 158182161 158182161 C T ERMN Silent p.P11P 0.10 TCGA-AA-3984-01 2 159166129 159166129 T C CCDC148 Missense_Mutation p.D309G 0.31 deleterious(0.02) possibly_damaging(0.908) TCGA-AA-3984-01 2 159488345 159488345 A G PKP4 Missense_Mutation p.T412A 0.30 tolerated(0.5) benign(0.047) TCGA-AA-3984-01 2 159499085 159499085 C T PKP4 Nonsense_Mutation p.R595* 0.06 TCGA-AA-3984-01 2 159672416 159672416 C T DAPL1 3'UTR 0.28 TCGA-AA-3984-01 2 160086403 160086403 G A TANC1 Missense_Mutation p.R1489Q 0.24 deleterious_low_confidence(0.03) benign(0.184) TCGA-AA-3984-01 2 160087497 160087497 C T TANC1 Nonsense_Mutation p.R1854* 0.06 TCGA-AA-3984-01 2 160738802 160738802 C T LY75-CD302 Missense_Mutation p.R360H 0.16 tolerated(0.38) benign(0.003) TCGA-AA-3984-01 2 162875264 162875264 C T DPP4 Silent p.A465A 0.11 TCGA-AA-3984-01 2 163059653 163059653 G T FAP Missense_Mutation p.F350L 0.10 deleterious(0.01) benign(0.185) TCGA-AA-3984-01 2 163241206 163241206 G T KCNH7 Missense_Mutation p.S985Y 0.33 deleterious(0) benign(0.001) TCGA-AA-3984-01 2 163393438 163393438 T G KCNH7 Missense_Mutation p.N154H 0.20 tolerated(0.23) benign(0.027) TCGA-AA-3984-01 2 164466486 164466486 G A FIGN Missense_Mutation p.S619L 0.28 deleterious(0.01) probably_damaging(0.948) TCGA-AA-3984-01 2 1652246 1652246 G T PXDN Missense_Mutation p.F1102L 0.26 tolerated(0.07) possibly_damaging(0.766) TCGA-AA-3984-01 2 165378573 165378573 C A GRB14 Nonsense_Mutation p.E245* 0.26 TCGA-AA-3984-01 2 165953862 165953862 T G SCN3A Missense_Mutation p.N1380T 0.23 deleterious(0.02) possibly_damaging(0.832) TCGA-AA-3984-01 2 165970353 165970353 G T SCN3A Missense_Mutation p.F1214L 0.34 tolerated(0.13) benign(0.285) TCGA-AA-3984-01 2 166003327 166003327 G A SCN3A Silent p.S531S 0.08 TCGA-AA-3984-01 2 166223836 166223836 C T SCN2A Silent p.F1210F 0.08 TCGA-AA-3984-01 2 166245315 166245315 C A SCN2A Missense_Mutation p.L1667I 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3984-01 2 166535444 166535444 C T CSRNP3 Silent p.I313I 0.21 TCGA-AA-3984-01 2 166895938 166895938 G A SCN1A Nonsense_Mutation p.R862* 0.22 TCGA-AA-3984-01 2 166901615 166901615 A C SCN1A Missense_Mutation p.F534V 0.26 tolerated(0.08) benign(0.212) TCGA-AA-3984-01 2 166908391 166908391 G A SCN1A Silent p.L268L 0.12 TCGA-AA-3984-01 2 166911231 166911231 A C SCN1A Missense_Mutation p.I173M 0.08 deleterious(0.04) possibly_damaging(0.888) TCGA-AA-3984-01 2 166930061 166930061 G A SCN1A Missense_Mutation p.A24V 0.08 tolerated(0.06) benign(0.075) TCGA-AA-3984-01 2 167134778 167134778 C T SCN9A Missense_Mutation p.A786T 0.30 deleterious(0) possibly_damaging(0.769) TCGA-AA-3984-01 2 167136899 167136899 C T SCN9A Missense_Mutation p.E760K 0.15 tolerated(0.09) benign(0.01) TCGA-AA-3984-01 2 167160571 167160571 G A SCN9A Intron 0.27 TCGA-AA-3984-01 2 167262211 167262211 C T SCN7A Missense_Mutation p.R1643Q 0.14 tolerated(0.57) benign(0.001) TCGA-AA-3984-01 2 167285765 167285765 G T SCN7A Nonsense_Mutation p.S871* 0.20 TCGA-AA-3984-01 2 167289249 167289249 A C SCN7A Missense_Mutation p.F724C 0.31 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 2 168074699 168074699 C T XIRP2 Silent p.C249C 0.34 TCGA-AA-3984-01 2 168102250 168102250 A G XIRP2 Missense_Mutation p.K1450E 0.14 probably_damaging(0.923) TCGA-AA-3984-01 2 168106530 168106530 C T XIRP2 Silent p.T2876T 0.34 TCGA-AA-3984-01 2 168106680 168106680 C T XIRP2 Silent p.F2926F 0.30 TCGA-AA-3984-01 2 168107875 168107875 T G XIRP2 Missense_Mutation p.F3325V 0.17 benign(0.009) TCGA-AA-3984-01 2 168115564 168115564 C A XIRP2 3'UTR 0.31 TCGA-AA-3984-01 2 169626210 169626210 T G CERS6 3'UTR 0.40 TCGA-AA-3984-01 2 169733808 169733808 A G SPC25 Silent p.L96L 0.29 TCGA-AA-3984-01 2 170025080 170025080 G A LRP2 Silent p.G3868G 0.29 TCGA-AA-3984-01 2 170048428 170048428 G A LRP2 Silent p.Y2982Y 0.32 TCGA-AA-3984-01 2 170403007 170403007 C T FASTKD1 Silent p.A474A 0.27 TCGA-AA-3984-01 2 170605954 170605954 G A KLHL23 Silent p.P463P 0.25 TCGA-AA-3984-01 2 170806289 170806289 G T UBR3 Nonsense_Mutation p.E1087* 0.31 TCGA-AA-3984-01 2 171034685 171034685 T C MYO3B 5'UTR 0.35 TCGA-AA-3984-01 2 171641315 171641315 C T ERICH2 Missense_Mutation p.T63I 0.09 tolerated(0.37) benign(0.162) TCGA-AA-3984-01 2 171686061 171686061 G T GAD1 Missense_Mutation p.K74N 0.23 tolerated(0.15) benign(0.051) TCGA-AA-3984-01 2 172180625 172180625 A G METTL8 3'UTR 0.37 TCGA-AA-3984-01 2 173901422 173901422 T G RAPGEF4 Splice_Site p.X951_splice 0.33 TCGA-AA-3984-01 2 174224139 174224139 G A CDCA7 Missense_Mutation p.E102K 0.23 tolerated(0.11) benign(0.023) TCGA-AA-3984-01 2 174820276 174820276 C A SP3 Nonsense_Mutation p.E322* 0.16 TCGA-AA-3984-01 2 175201822 175201822 C T SP9 Missense_Mutation p.P337S 0.19 deleterious(0) possibly_damaging(0.857) TCGA-AA-3984-01 2 175243671 175243671 G A CIR1 Missense_Mutation p.S155L 0.25 deleterious(0) unknown(0) TCGA-AA-3984-01 2 175426897 175426897 G T WIPF1 3'UTR 0.27 TCGA-AA-3984-01 2 175618130 175618130 G A CHRNA1 Intron 0.35 TCGA-AA-3984-01 2 175711900 175711900 T C CHN1 Intron 0.25 TCGA-AA-3984-01 2 176964555 176964555 C T HOXD12 Missense_Mutation p.A9V 0.31 tolerated(0.08) possibly_damaging(0.684) TCGA-AA-3984-01 2 176973830 176973830 G T HOXD11 Missense_Mutation p.R326I 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 2 17698250 17698250 C T RAD51AP2 Nonsense_Mutation p.W478* 0.36 TCGA-AA-3984-01 2 176983930 176983930 G T HOXD10 Nonsense_Mutation p.E332* 0.23 TCGA-AA-3984-01 2 17699320 17699320 T G RAD51AP2 Missense_Mutation p.Q121H 0.24 tolerated(0.08) possibly_damaging(0.639) TCGA-AA-3984-01 2 177015125 177015125 C T HOXD3 5'UTR 0.09 TCGA-AA-3984-01 2 177054656 177054656 G A HOXD1 Missense_Mutation p.R258Q 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 178494056 178494056 G T PDE11A 3'UTR 0.16 TCGA-AA-3984-01 2 178981057 178981057 C A RBM45 Silent p.I123I 0.28 TCGA-AA-3984-01 2 179213966 179213966 A G OSBPL6 Missense_Mutation p.T360A 0.31 tolerated(0.28) benign(0.139) TCGA-AA-3984-01 2 179309179 179309179 C A PRKRA Missense_Mutation p.K122N 0.26 tolerated(0.43) benign(0.002) TCGA-AA-3984-01 2 179393144 179393144 G T TTN Missense_Mutation p.S35745Y 0.36 TCGA-AA-3984-01 2 179398382 179398382 G A TTN Silent p.I34320I 0.24 TCGA-AA-3984-01 2 179401154 179401154 A C TTN Missense_Mutation p.I33440M 0.25 TCGA-AA-3984-01 2 179403402 179403402 G A TTN Missense_Mutation p.R33052C 0.27 TCGA-AA-3984-01 2 17942671 17942671 T A GEN1 Missense_Mutation p.F57Y 0.28 tolerated(0.05) probably_damaging(0.99) TCGA-AA-3984-01 2 179429600 179429600 C A TTN Missense_Mutation p.D27087Y 0.32 TCGA-AA-3984-01 2 179454260 179454260 T C TTN Missense_Mutation p.D20731G 0.33 TCGA-AA-3984-01 2 179507021 179507021 G A TTN Missense_Mutation p.R13501C 0.21 TCGA-AA-3984-01 2 179559369 179559369 T C TTN Silent p.K10461K 0.09 TCGA-AA-3984-01 2 179585338 179585338 A C TTN Silent p.S7717S 0.32 TCGA-AA-3984-01 2 179593455 179593455 C A TTN Missense_Mutation p.D6400Y 0.27 TCGA-AA-3984-01 2 179596853 179596853 T C TTN Missense_Mutation p.M5615V 0.28 TCGA-AA-3984-01 2 179610226 179610226 G A TTN Intron 0.36 TCGA-AA-3984-01 2 179613259 179613259 G T TTN Intron 0.08 TCGA-AA-3984-01 2 179615301 179615301 G A TTN Intron 0.33 TCGA-AA-3984-01 2 179616722 179616722 G A TTN Intron 0.32 TCGA-AA-3984-01 2 17962427 17962427 G A GEN1 Missense_Mutation p.D650N 0.36 tolerated(0.24) benign(0.02) TCGA-AA-3984-01 2 179638073 179638073 G A TTN Missense_Mutation p.R2540C 0.27 TCGA-AA-3984-01 2 179640556 179640556 G T TTN Missense_Mutation p.A2012D 0.31 TCGA-AA-3984-01 2 179650454 179650454 C T TTN Missense_Mutation p.D796N 0.27 TCGA-AA-3984-01 2 17998106 17998106 C T MSGN1 Silent p.G107G 0.27 TCGA-AA-3984-01 2 182347255 182347255 T C ITGA4 Silent p.F306F 0.27 TCGA-AA-3984-01 2 183053739 183053739 G A PDE1A Missense_Mutation p.R408W 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 183387217 183387217 A G PDE1A 5'UTR 0.39 TCGA-AA-3984-01 2 183605973 183605973 C T DNAJC10 Missense_Mutation p.R361C 0.10 deleterious(0.02) possibly_damaging(0.772) TCGA-AA-3984-01 2 1843005 1843005 G A MYT1L Missense_Mutation p.S997L 0.17 tolerated(0.22) probably_damaging(0.992) TCGA-AA-3984-01 2 186673345 186673345 G T FSIP2 Nonsense_Mutation p.E6527* 0.22 TCGA-AA-3984-01 2 187359971 187359971 C T ZC3H15 Silent p.F29F 0.29 TCGA-AA-3984-01 2 18736985 18736985 G A RDH14 Silent p.F161F 0.09 TCGA-AA-3984-01 2 187615926 187615926 G T FAM171B Nonsense_Mutation p.E264* 0.24 TCGA-AA-3984-01 2 187626444 187626444 G A FAM171B Missense_Mutation p.D459N 0.32 tolerated(1) benign(0) TCGA-AA-3984-01 2 188217025 188217025 A G CALCRL Missense_Mutation p.V315A 0.22 deleterious(0) possibly_damaging(0.745) TCGA-AA-3984-01 2 188331611 188331611 A G TFPI 3'UTR 0.13 TCGA-AA-3984-01 2 189899821 189899821 G T COL5A2 Missense_Mutation p.L1392I 0.27 unknown(0) TCGA-AA-3984-01 2 190332278 190332278 C A WDR75 Missense_Mutation p.S511Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 2 190440040 190440040 G A SLC40A1 Missense_Mutation p.R40W 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 190532551 190532551 G A ASNSD1 Missense_Mutation p.R509H 0.23 tolerated(0.11) benign(0.047) TCGA-AA-3984-01 2 190608073 190608073 G T ANKAR Nonsense_Mutation p.E1295* 0.10 TCGA-AA-3984-01 2 190611273 190611273 G A ANKAR Missense_Mutation p.V1409I 0.30 tolerated_low_confidence(0.1) benign(0.009) TCGA-AA-3984-01 2 190927367 190927367 C A MSTN 5'UTR 0.25 TCGA-AA-3984-01 2 191894521 191894521 A G STAT4 3'UTR 0.26 TCGA-AA-3984-01 2 1921062 1921062 A C MYT1L Missense_Mutation p.C509W 0.24 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 192228950 192228950 G A MYO1B Missense_Mutation p.R327Q 0.18 deleterious(0) benign(0.061) TCGA-AA-3984-01 2 1926535 1926535 C T MYT1L Missense_Mutation p.D336N 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3984-01 2 192821034 192821034 G T TMEFF2 Missense_Mutation p.F272L 0.26 deleterious(0.04) benign(0.057) TCGA-AA-3984-01 2 196573570 196573570 T C SLC39A10 Splice_Site p.X525_splice 0.39 TCGA-AA-3984-01 2 196642563 196642563 G A DNAH7 Silent p.F3675F 0.11 TCGA-AA-3984-01 2 196664105 196664105 T C DNAH7 Missense_Mutation p.D3423G 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-AA-3984-01 2 197081730 197081730 A G HECW2 Splice_Site p.X1498_splice 0.10 TCGA-AA-3984-01 2 197586248 197586248 T C CCDC150 Silent p.I754I 0.34 TCGA-AA-3984-01 2 197637710 197637710 C A GTF3C3 Nonsense_Mutation p.E667* 0.11 TCGA-AA-3984-01 2 197710733 197710733 T G PGAP1 Missense_Mutation p.E720A 0.28 tolerated(0.72) benign(0.007) TCGA-AA-3984-01 2 197866520 197866520 G A ANKRD44 Missense_Mutation p.R773C 0.14 tolerated(0.07) benign(0.013) TCGA-AA-3984-01 2 197943320 197943320 T C ANKRD44 3'UTR 0.19 TCGA-AA-3984-01 2 198001381 198001381 G A ANKRD44 Missense_Mutation p.R66C 0.33 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 2 198011793 198011793 A C ANKRD44 Missense_Mutation p.F50V 0.23 deleterious(0.01) probably_damaging(0.934) TCGA-AA-3984-01 2 198283791 198283791 C A SF3B1 Intron 0.50 TCGA-AA-3984-01 2 198480650 198480650 G A RFTN2 Silent p.F368F 0.25 TCGA-AA-3984-01 2 198949564 198949564 C T PLCL1 Silent p.S441S 0.31 TCGA-AA-3984-01 2 20145647 20145647 C T WDR35 Missense_Mutation p.R593Q 0.36 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 2 20153693 20153693 C T WDR35 Silent p.S445S 0.20 TCGA-AA-3984-01 2 201725975 201725975 G A CLK1 Missense_Mutation p.R168C 0.31 tolerated(0.07) possibly_damaging(0.462) TCGA-AA-3984-01 2 20174239 20174239 C A WDR35 Missense_Mutation p.E242D 0.10 tolerated(0.13) benign(0.197) TCGA-AA-3984-01 2 201775929 201775929 A C ORC2 3'UTR 0.33 TCGA-AA-3984-01 2 201845951 201845951 C A FAM126B 3'UTR 0.26 TCGA-AA-3984-01 2 20234754 20234754 A G LAPTM4A Missense_Mutation p.F168L 0.29 tolerated(0.06) benign(0.026) TCGA-AA-3984-01 2 202466575 202466575 G A ALS2CR11 Missense_Mutation p.R135C 0.23 tolerated(0.06) benign(0.007) TCGA-AA-3984-01 2 202509885 202509885 G A MPP4 3'UTR 0.25 TCGA-AA-3984-01 2 202514862 202514862 C T MPP4 Missense_Mutation p.E470K 0.24 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 2 202552034 202552034 G A MPP4 Missense_Mutation p.L114F 0.21 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 2 202588070 202588070 G T ALS2 Missense_Mutation p.H1203N 0.08 tolerated(0.48) benign(0.001) TCGA-AA-3984-01 2 202591415 202591415 G A ALS2 Missense_Mutation p.R1052C 0.17 deleterious(0.04) probably_damaging(0.935) TCGA-AA-3984-01 2 202622157 202622157 C T ALS2 Missense_Mutation p.R480Q 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 2 202698596 202698596 G A CDK15 Missense_Mutation p.G211D 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 2 202902275 202902275 T C FZD7 3'UTR 0.13 TCGA-AA-3984-01 2 203421084 203421084 G A BMPR2 Missense_Mutation p.R899Q 0.12 tolerated_low_confidence(0.22) possibly_damaging(0.865) TCGA-AA-3984-01 2 203881023 203881023 A C NBEAL1 5'UTR 0.22 TCGA-AA-3984-01 2 203972523 203972523 A C NBEAL1 Silent p.R492R 0.20 TCGA-AA-3984-01 2 204000701 204000701 T C NBEAL1 Missense_Mutation p.L1343S 0.28 tolerated(0.42) benign(0.119) TCGA-AA-3984-01 2 204305780 204305780 T C RAPH1 Silent p.P711P 0.23 TCGA-AA-3984-01 2 204309642 204309642 G A RAPH1 Silent p.S575S 0.35 TCGA-AA-3984-01 2 204354396 204354396 C T RAPH1 Missense_Mutation p.A215T 0.23 possibly_damaging(0.84) TCGA-AA-3984-01 2 204801578 204801578 G A ICOS Missense_Mutation p.R14H 0.11 deleterious(0.03) benign(0.005) TCGA-AA-3984-01 2 206610475 206610475 C T NRP2 Silent p.F549F 0.15 TCGA-AA-3984-01 2 206630206 206630206 C T NRP2 Silent p.F772F 0.21 TCGA-AA-3984-01 2 207009706 207009706 A C NDUFS1 Missense_Mutation p.I275S 0.26 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 2 207162062 207162062 A G ZDBF2 Silent p.V51V 0.28 TCGA-AA-3984-01 2 207170072 207170072 G T ZDBF2 Missense_Mutation p.D274Y 0.21 deleterious(0.01) possibly_damaging(0.861) TCGA-AA-3984-01 2 207174160 207174160 G A ZDBF2 Missense_Mutation p.M1636I 0.25 tolerated(0.22) benign(0.019) TCGA-AA-3984-01 2 207527657 207527657 T C DYTN Missense_Mutation p.M535V 0.17 tolerated(0.86) benign(0.004) TCGA-AA-3984-01 2 207804384 207804384 T C CPO Missense_Mutation p.Y21H 0.31 deleterious(0) benign(0.364) TCGA-AA-3984-01 2 207825643 207825643 G A CPO Missense_Mutation p.R184Q 0.23 tolerated(0.07) possibly_damaging(0.723) TCGA-AA-3984-01 2 209215528 209215528 G A PIKFYVE Missense_Mutation p.R1823Q 0.24 deleterious(0) probably_damaging(0.924) TCGA-AA-3984-01 2 210558484 210558484 G T MAP2 Missense_Mutation p.K530N 0.11 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-AA-3984-01 2 210595096 210595096 C T MAP2 Missense_Mutation p.A1820V 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 2 210595136 210595136 G T MAP2 3'UTR 0.20 TCGA-AA-3984-01 2 210658504 210658504 T G UNC80 Missense_Mutation p.S287A 0.22 benign(0.054) TCGA-AA-3984-01 2 210782633 210782633 G A UNC80 Missense_Mutation p.R1655H 0.22 probably_damaging(0.993) TCGA-AA-3984-01 2 210818825 210818825 C A UNC80 Missense_Mutation p.L2364I 0.26 benign(0.069) TCGA-AA-3984-01 2 210896246 210896246 C A KANSL1L Missense_Mutation p.R685I 0.30 deleterious(0.01) possibly_damaging(0.724) TCGA-AA-3984-01 2 211460265 211460265 G T CPS1 Nonsense_Mutation p.E446* 0.30 TCGA-AA-3984-01 2 211507287 211507287 G T CPS1 Silent p.V1019V 0.25 TCGA-AA-3984-01 2 21228053 21228053 G A APOB Missense_Mutation p.A3896V 0.23 benign(0.008) TCGA-AA-3984-01 2 212295795 212295795 C T ERBB4 Missense_Mutation p.V840I 0.20 deleterious(0.03) possibly_damaging(0.808) TCGA-AA-3984-01 2 21230434 21230434 G T APOB Missense_Mutation p.F3102L 0.28 possibly_damaging(0.812) TCGA-AA-3984-01 2 21235330 21235330 A C APOB Missense_Mutation p.H1470Q 0.27 benign(0.007) TCGA-AA-3984-01 2 212652865 212652865 G A ERBB4 Silent p.V147V 0.11 TCGA-AA-3984-01 2 213403208 213403208 G A ERBB4 Missense_Mutation p.A16V 0.14 tolerated(0.5) benign(0.001) TCGA-AA-3984-01 2 214215360 214215360 A C SPAG16 Silent p.V251V 0.26 TCGA-AA-3984-01 2 214354773 214354773 G A SPAG16 Silent p.K343K 0.27 TCGA-AA-3984-01 2 215440569 215440569 T C VWC2L 3'UTR 0.23 TCGA-AA-3984-01 2 215868934 215868934 G T ABCA12 Silent p.L894L 0.08 TCGA-AA-3984-01 2 215884286 215884286 T C ABCA12 Missense_Mutation p.K508E 0.23 tolerated(0.08) possibly_damaging(0.542) TCGA-AA-3984-01 2 216977848 216977848 G A XRCC5 Missense_Mutation p.R44Q 0.28 deleterious(0.01) benign(0.428) TCGA-AA-3984-01 2 217054974 217054974 G A XRCC5 Missense_Mutation p.E621K 0.27 tolerated(0.24) benign(0.283) TCGA-AA-3984-01 2 218925311 218925311 T G CXCR2P1 RNA 0.44 TCGA-AA-3984-01 2 219269033 219269033 C T CTDSP1 Missense_Mutation p.S224L 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 2 219360483 219360483 G A USP37 Missense_Mutation p.A491V 0.32 tolerated(0.21) benign(0.003) TCGA-AA-3984-01 2 219452384 219452384 G A RQCD1 Missense_Mutation p.R169Q 0.10 deleterious(0.03) benign(0.028) TCGA-AA-3984-01 2 219561917 219561917 G A STK36 Nonsense_Mutation p.W914* 0.22 TCGA-AA-3984-01 2 219562646 219562646 G A STK36 Silent p.A993A 0.11 TCGA-AA-3984-01 2 219566797 219566797 G A STK36 3'UTR 0.26 TCGA-AA-3984-01 2 219692053 219692053 G A PRKAG3 Missense_Mutation p.R307C 0.21 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 219888864 219888864 C T CCDC108 Missense_Mutation p.R823Q 0.11 deleterious(0.02) possibly_damaging(0.784) TCGA-AA-3984-01 2 220091635 220091635 C A ATG9A Missense_Mutation p.K56N 0.32 tolerated(0.08) possibly_damaging(0.707) TCGA-AA-3984-01 2 220098443 220098443 C T ANKZF1 Missense_Mutation p.R276C 0.08 deleterious(0) possibly_damaging(0.836) TCGA-AA-3984-01 2 220285633 220285633 G A DES Silent p.Q327Q 0.29 TCGA-AA-3984-01 2 220329309 220329309 G A SPEG Missense_Mutation p.E954K 0.34 probably_damaging(0.983) TCGA-AA-3984-01 2 220435205 220435205 G A OBSL1 Silent p.C250C 0.36 TCGA-AA-3984-01 2 223066632 223066632 G T PAX3 Intron 0.25 TCGA-AA-3984-01 2 223436710 223436710 C A FARSB Missense_Mutation p.E550D 0.17 tolerated(0.46) benign(0) TCGA-AA-3984-01 2 223773807 223773807 G A ACSL3 Missense_Mutation p.G106E 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 224461928 224461928 A C SCG2 3'UTR 0.30 TCGA-AA-3984-01 2 224462354 224462354 C T SCG2 Silent p.E549E 0.34 TCGA-AA-3984-01 2 224463181 224463181 T G SCG2 Missense_Mutation p.K274Q 0.28 deleterious(0.02) possibly_damaging(0.762) TCGA-AA-3984-01 2 224856687 224856687 A C SERPINE2 Missense_Mutation p.L185R 0.18 tolerated(0.35) possibly_damaging(0.694) TCGA-AA-3984-01 2 225244304 225244304 C A FAM124B Nonsense_Mutation p.E452* 0.24 TCGA-AA-3984-01 2 225639731 225639731 G A DOCK10 Silent p.F1968F 0.29 TCGA-AA-3984-01 2 225652052 225652052 T C DOCK10 Silent p.E1827E 0.10 TCGA-AA-3984-01 2 225653824 225653824 G A DOCK10 Missense_Mutation p.A1792V 0.08 deleterious(0) benign(0.273) TCGA-AA-3984-01 2 225659600 225659600 G A DOCK10 Missense_Mutation p.S1717F 0.31 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 2 227886831 227886831 C T COL4A4 Silent p.G1383G 0.27 TCGA-AA-3984-01 2 227958930 227958930 C A COL4A4 Missense_Mutation p.R427I 0.27 probably_damaging(0.928) TCGA-AA-3984-01 2 228109670 228109670 A G COL4A3 Missense_Mutation p.I95V 0.29 benign(0.376) TCGA-AA-3984-01 2 228389531 228389531 C T AGFG1 Silent p.D198D 0.29 TCGA-AA-3984-01 2 228497827 228497827 C A C2orf83 5'UTR 0.31 TCGA-AA-3984-01 2 228762903 228762903 A C DAW1 Missense_Mutation p.K149T 0.12 deleterious(0) probably_damaging(0.955) TCGA-AA-3984-01 2 228881601 228881601 G T SPHKAP Silent p.I1323I 0.37 TCGA-AA-3984-01 2 228882181 228882181 G A SPHKAP Missense_Mutation p.S1130F 0.26 deleterious(0) probably_damaging(0.98) TCGA-AA-3984-01 2 228884248 228884248 G T SPHKAP Missense_Mutation p.S441Y 0.34 deleterious(0) possibly_damaging(0.615) TCGA-AA-3984-01 2 228890220 228890220 G T SPHKAP Missense_Mutation p.L111I 0.31 deleterious(0.04) probably_damaging(0.961) TCGA-AA-3984-01 2 230632460 230632460 C T TRIP12 Missense_Mutation p.R1930Q 0.16 deleterious(0.01) possibly_damaging(0.788) TCGA-AA-3984-01 2 231175930 231175930 T G SP140 Missense_Mutation p.I782S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 2 231973377 231973377 G A HTR2B Nonsense_Mutation p.R434* 0.11 TCGA-AA-3984-01 2 232262581 232262581 C T B3GNT7 Missense_Mutation p.P51S 0.20 tolerated(0.57) benign(0.003) TCGA-AA-3984-01 2 232393538 232393538 G T NMUR1 Missense_Mutation p.A65D 0.34 deleterious(0) benign(0.247) TCGA-AA-3984-01 2 232602765 232602765 G A PDE6D Missense_Mutation p.R75C 0.28 deleterious(0.05) benign(0.123) TCGA-AA-3984-01 2 233001300 233001300 G A DIS3L2 Missense_Mutation p.R274Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 2 233322995 233322995 G A ALPI Missense_Mutation p.D354N 0.14 deleterious(0) benign(0.367) TCGA-AA-3984-01 2 233347615 233347615 C T ECEL1 Missense_Mutation p.R544H 0.22 tolerated(0.31) benign(0.379) TCGA-AA-3984-01 2 233351003 233351003 C T ECEL1 Missense_Mutation p.D121N 0.18 tolerated(0.17) benign(0.349) TCGA-AA-3984-01 2 233708895 233708895 C T GIGYF2 Missense_Mutation p.A1031V 0.10 unknown(0) TCGA-AA-3984-01 2 234078674 234078674 G A INPP5D Missense_Mutation p.R540Q 0.23 deleterious(0) probably_damaging(0.927) TCGA-AA-3984-01 2 234429692 234429692 A G USP40 Missense_Mutation p.L768S 0.33 tolerated(0.34) benign(0.239) TCGA-AA-3984-01 2 234460072 234460072 T G USP40 Missense_Mutation p.S275R 0.32 tolerated(0.07) benign(0.099) TCGA-AA-3984-01 2 234581341 234581341 G A UGT1A9 Missense_Mutation p.R254Q 0.25 deleterious(0.01) possibly_damaging(0.903) TCGA-AA-3984-01 2 234855983 234855983 G A TRPM8 Intron 0.24 TCGA-AA-3984-01 2 234856016 234856016 T C TRPM8 Intron 0.10 TCGA-AA-3984-01 2 237032836 237032836 C T AGAP1 3'UTR 0.16 TCGA-AA-3984-01 2 237272595 237272595 G T IQCA1 Missense_Mutation p.P566H 0.34 deleterious(0) probably_damaging(0.973) TCGA-AA-3984-01 2 237489873 237489873 C A ACKR3 Missense_Mutation p.F255L 0.31 tolerated(0.75) benign(0.006) TCGA-AA-3984-01 2 237490932 237490932 C T ACKR3 3'UTR 0.25 TCGA-AA-3984-01 2 237490946 237490946 C A ACKR3 3'UTR 0.28 TCGA-AA-3984-01 2 238275922 238275922 C A COL6A3 Missense_Mutation p.K1636N 0.24 benign(0.275) TCGA-AA-3984-01 2 238277782 238277782 C T COL6A3 Missense_Mutation p.D1442N 0.44 probably_damaging(1) TCGA-AA-3984-01 2 238285557 238285557 C A COL6A3 Missense_Mutation p.K976N 0.28 probably_damaging(0.988) TCGA-AA-3984-01 2 238475294 238475294 T C PRLH Silent p.H26H 0.16 TCGA-AA-3984-01 2 238626404 238626404 G T LRRFIP1 Intron 0.27 TCGA-AA-3984-01 2 238671823 238671823 G A LRRFIP1 Silent p.A489A 0.12 TCGA-AA-3984-01 2 238727117 238727117 G T RBM44 Missense_Mutation p.A520S 0.28 deleterious(0.01) possibly_damaging(0.621) TCGA-AA-3984-01 2 238729841 238729841 C T RBM44 Missense_Mutation p.P682S 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 238976752 238976752 G A SCLY Silent p.A91A 0.31 TCGA-AA-3984-01 2 240274425 240274425 C T HDAC4 5'UTR 0.29 TCGA-AA-3984-01 2 241812423 241812423 G A AGXT Silent p.S184S 0.16 TCGA-AA-3984-01 2 241817501 241817501 C T AGXT Silent p.I335I 0.40 TCGA-AA-3984-01 2 241988453 241988453 C T SNED1 Missense_Mutation p.P507S 0.38 tolerated(0.05) probably_damaging(1) TCGA-AA-3984-01 2 242404986 242404986 G A FARP2 Intron 0.28 TCGA-AA-3984-01 2 242648731 242648731 C T ING5 Silent p.N70N 0.33 TCGA-AA-3984-01 2 242694478 242694478 C T D2HGDH Intron 0.29 TCGA-AA-3984-01 2 243056855 243056855 G T AC093642.5 RNA 0.09 TCGA-AA-3984-01 2 24469741 24469741 T G ITSN2 Missense_Mutation p.K1104Q 0.27 tolerated(0.25) unknown(0) TCGA-AA-3984-01 2 24498605 24498605 C A ITSN2 Missense_Mutation p.K686N 0.30 tolerated(0.06) unknown(0) TCGA-AA-3984-01 2 24521557 24521557 G A ITSN2 Missense_Mutation p.L491F 0.11 deleterious(0.02) unknown(0) TCGA-AA-3984-01 2 25982468 25982468 C T ASXL2 Silent p.P274P 0.25 TCGA-AA-3984-01 2 26532823 26532823 C T GPR113 Missense_Mutation p.A1077T 0.35 deleterious_low_confidence(0.01) benign(0.035) TCGA-AA-3984-01 2 26712605 26712605 A C OTOF Missense_Mutation p.F301V 0.21 deleterious(0.01) possibly_damaging(0.803) TCGA-AA-3984-01 2 27169901 27169901 G A DPYSL5 3'UTR 0.28 TCGA-AA-3984-01 2 27448616 27448616 G A CAD Missense_Mutation p.R555H 0.20 deleterious(0) probably_damaging(0.965) TCGA-AA-3984-01 2 27449069 27449069 A G CAD Missense_Mutation p.Q638R 0.40 deleterious(0) possibly_damaging(0.828) TCGA-AA-3984-01 2 27505698 27505698 C A TRIM54 Missense_Mutation p.F33L 0.30 deleterious(0) probably_damaging(0.953) TCGA-AA-3984-01 2 27521556 27521556 G A TRIM54 Missense_Mutation p.R97Q 0.16 deleterious(0.02) possibly_damaging(0.761) TCGA-AA-3984-01 2 27551342 27551342 C T GTF3C2 Missense_Mutation p.R750Q 0.21 deleterious(0) possibly_damaging(0.788) TCGA-AA-3984-01 2 27564922 27564923 - A GTF3C2 Frame_Shift_Ins p.L250Sfs*4 0.24 TCGA-AA-3984-01 2 27603043 27603043 T G ZNF513 Missense_Mutation p.D43A 0.13 deleterious(0.01) possibly_damaging(0.539) TCGA-AA-3984-01 2 27607618 27607618 A G PPM1G Silent p.P249P 0.34 TCGA-AA-3984-01 2 27666892 27666892 A C KRTCAP3 Missense_Mutation p.E231A 0.27 deleterious_low_confidence(0.01) benign(0.185) TCGA-AA-3984-01 2 27801202 27801202 T C C2orf16 Missense_Mutation p.V588A 0.11 deleterious(0.01) benign(0.002) TCGA-AA-3984-01 2 27802566 27802566 C A C2orf16 Missense_Mutation p.L1043I 0.32 tolerated(0.11) possibly_damaging(0.713) TCGA-AA-3984-01 2 27804474 27804474 C T C2orf16 Missense_Mutation p.R1679C 0.24 tolerated(0.08) benign(0.006) TCGA-AA-3984-01 2 27844028 27844028 C T ZNF512 Silent p.F468F 0.30 TCGA-AA-3984-01 2 27876440 27876440 C T SUPT7L Missense_Mutation p.S386N 0.29 tolerated_low_confidence(0.06) benign(0.107) TCGA-AA-3984-01 2 28081388 28081388 A C RBKS Missense_Mutation p.F47C 0.25 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 2 29087917 29087917 G A TRMT61B Silent p.G256G 0.30 TCGA-AA-3984-01 2 29295794 29295794 G T C2orf71 Missense_Mutation p.S445Y 0.26 tolerated(0.05) probably_damaging(0.946) TCGA-AA-3984-01 2 29355040 29355040 T C CLIP4 Missense_Mutation p.V99A 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3984-01 2 29358515 29358515 G A CLIP4 Missense_Mutation p.A211T 0.34 deleterious(0.02) possibly_damaging(0.79) TCGA-AA-3984-01 2 29519819 29519819 G A ALK Silent p.V584V 0.29 TCGA-AA-3984-01 2 32640815 32640815 A C BIRC6 Missense_Mutation p.N819T 0.09 benign(0) TCGA-AA-3984-01 2 32658810 32658810 A C BIRC6 Missense_Mutation p.N1116T 0.34 probably_damaging(0.98) TCGA-AA-3984-01 2 32689781 32689781 G A BIRC6 Missense_Mutation p.V1716I 0.33 probably_damaging(0.97) TCGA-AA-3984-01 2 32692602 32692602 G T BIRC6 Missense_Mutation p.R1789I 0.35 probably_damaging(0.991) TCGA-AA-3984-01 2 32703729 32703729 G A BIRC6 Silent p.T2365T 0.25 TCGA-AA-3984-01 2 32724879 32724879 G A BIRC6 Missense_Mutation p.E2912K 0.25 probably_damaging(0.986) TCGA-AA-3984-01 2 32842945 32842945 G T BIRC6 Nonsense_Mutation p.E4850* 0.40 TCGA-AA-3984-01 2 36779420 36779420 T G FEZ2 3'UTR 0.33 TCGA-AA-3984-01 2 37032738 37032738 C A VIT Missense_Mutation p.F440L 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 3726107 3726107 G A ALLC Nonsense_Mutation p.W45* 0.20 TCGA-AA-3984-01 2 37376274 37376274 T G EIF2AK2 Intron 0.31 TCGA-AA-3984-01 2 37376298 37376298 C T EIF2AK2 Intron 0.12 TCGA-AA-3984-01 2 37398689 37398689 G T SULT6B1 Missense_Mutation p.F185L 0.32 tolerated(0.28) benign(0.019) TCGA-AA-3984-01 2 37426905 37426905 G A CEBPZ-AS1 Missense_Mutation p.E20K 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-AA-3984-01 2 37455502 37455502 G A CEBPZ Silent p.S278S 0.24 TCGA-AA-3984-01 2 37469806 37469806 T G NDUFAF7 Missense_Mutation p.F217L 0.24 deleterious(0.03) probably_damaging(0.994) TCGA-AA-3984-01 2 38297953 38297953 G T CYP1B1 Nonsense_Mutation p.S515* 0.32 TCGA-AA-3984-01 2 38977174 38977174 A G SRSF7 Missense_Mutation p.V64A 0.16 deleterious(0.02) probably_damaging(0.934) TCGA-AA-3984-01 2 39008979 39008979 T G GEMIN6 Missense_Mutation p.I150S 0.22 deleterious(0) probably_damaging(0.969) TCGA-AA-3984-01 2 39033743 39033743 G A DHX57 Silent p.N1258N 0.17 TCGA-AA-3984-01 2 39075538 39075538 G A DHX57 Silent p.F679F 0.27 TCGA-AA-3984-01 2 39162976 39162976 G A ARHGEF33 Splice_Site p.X189_splice 0.18 TCGA-AA-3984-01 2 39406347 39406347 C A CDKL4 Missense_Mutation p.R303I 0.29 deleterious(0.02) benign(0.203) TCGA-AA-3984-01 2 39505605 39505605 G A MAP4K3 Silent p.A579A 0.30 TCGA-AA-3984-01 2 39996976 39996976 T G THUMPD2 Missense_Mutation p.E182D 0.28 tolerated(0.47) benign(0.023) TCGA-AA-3984-01 2 42522268 42522268 A C EML4 Missense_Mutation p.T408P 0.36 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 2 43452588 43452589 - T ZFP36L2 Frame_Shift_Ins p.F119Ifs*7 0.22 TCGA-AA-3984-01 2 43783690 43783690 G A THADA Missense_Mutation p.S823L 0.10 tolerated(0.21) benign(0.158) TCGA-AA-3984-01 2 43801502 43801502 G T THADA Missense_Mutation p.L568I 0.27 deleterious(0) probably_damaging(0.991) TCGA-AA-3984-01 2 43970988 43970988 G A PLEKHH2 Missense_Mutation p.A1139T 0.15 deleterious(0) benign(0.022) TCGA-AA-3984-01 2 43971006 43971006 G T PLEKHH2 Nonsense_Mutation p.E1145* 0.36 TCGA-AA-3984-01 2 44052105 44052105 G A ABCG5 Missense_Mutation p.T276M 0.10 tolerated(0.07) possibly_damaging(0.696) TCGA-AA-3984-01 2 44599889 44599889 G A CAMKMT Missense_Mutation p.R58Q 0.29 tolerated(0.62) benign(0) TCGA-AA-3984-01 2 45555 45555 T C FAM110C Missense_Mutation p.I277M 0.10 tolerated(0.18) benign(0.013) TCGA-AA-3984-01 2 48681801 48681801 G A PPP1R21 Missense_Mutation p.R65Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 2 48809255 48809255 G T STON1-GTF2A1L Nonsense_Mutation p.E495* 0.10 TCGA-AA-3984-01 2 48915455 48915455 G A LHCGR Missense_Mutation p.S494F 0.21 deleterious(0.02) probably_damaging(0.976) TCGA-AA-3984-01 2 48950766 48950766 G A LHCGR Silent p.F151F 0.23 TCGA-AA-3984-01 2 49190605 49190605 G T FSHR Missense_Mutation p.A452D 0.10 deleterious(0) probably_damaging(0.966) TCGA-AA-3984-01 2 49217723 49217723 G T FSHR Missense_Mutation p.S143Y 0.21 deleterious(0) probably_damaging(0.969) TCGA-AA-3984-01 2 50318600 50318600 A C NRXN1 Silent p.V1233V 0.21 TCGA-AA-3984-01 2 50765599 50765599 C T NRXN1 Silent p.R685R 0.08 TCGA-AA-3984-01 2 50848344 50848344 G A NRXN1 Missense_Mutation p.S426L 0.25 tolerated(0.38) benign(0.001) TCGA-AA-3984-01 2 51254919 51254919 C T NRXN1 Missense_Mutation p.A165T 0.08 tolerated(0.14) benign(0.028) TCGA-AA-3984-01 2 54023076 54023076 G T ERLEC1 Nonsense_Mutation p.E92* 0.26 TCGA-AA-3984-01 2 55056580 55056580 A C EML6 Missense_Mutation p.K271N 0.26 tolerated(0.42) benign(0.194) TCGA-AA-3984-01 2 55077340 55077340 T C EML6 Missense_Mutation p.F477L 0.14 tolerated(0.07) benign(0.008) TCGA-AA-3984-01 2 55144045 55144045 C T EML6 Silent p.F1216F 0.24 TCGA-AA-3984-01 2 55561838 55561838 G A CCDC88A Nonsense_Mutation p.R707* 0.25 TCGA-AA-3984-01 2 56216086 56216086 C T MIR216A RNA 0.34 TCGA-AA-3984-01 2 5835053 5835053 A G SOX11 3'UTR 0.06 TCGA-AA-3984-01 2 5839343 5839343 G A SOX11 3'UTR 0.23 TCGA-AA-3984-01 2 5840593 5840593 A C SOX11 3'UTR 0.08 TCGA-AA-3984-01 2 60773130 60773130 A T BCL11A Missense_Mutation p.C121S 0.30 tolerated(0.06) probably_damaging(0.972) TCGA-AA-3984-01 2 61544888 61544888 T C USP34 Silent p.K1061K 0.08 TCGA-AA-3984-01 2 62099386 62099386 C T CCT4 Missense_Mutation p.R441Q 0.26 tolerated(0.42) benign(0.008) TCGA-AA-3984-01 2 62449733 62449733 C G B3GNT2 Silent p.R126R 0.23 TCGA-AA-3984-01 2 62449880 62449880 G A B3GNT2 Silent p.T175T 0.29 TCGA-AA-3984-01 2 62450094 62450094 G A B3GNT2 Missense_Mutation p.D247N 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-AA-3984-01 2 63169980 63169980 G T EHBP1 Missense_Mutation p.R473I 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 2 63175579 63175579 T C EHBP1 Missense_Mutation p.V568A 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 2 63272158 63272158 C T EHBP1 Intron 0.15 TCGA-AA-3984-01 2 63282892 63282892 G C OTX1 Missense_Mutation p.S169T 0.09 tolerated(0.57) unknown(0) TCGA-AA-3984-01 2 63631539 63631539 G A WDPCP Missense_Mutation p.S360L 0.31 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 64083493 64083493 C T UGP2 Missense_Mutation p.R25W 0.25 tolerated(0.06) possibly_damaging(0.586) TCGA-AA-3984-01 2 64323281 64323281 G A PELI1 Missense_Mutation p.S223L 0.10 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 2 64779656 64779656 G T AFTPH Nonsense_Mutation p.E350* 0.30 TCGA-AA-3984-01 2 64780152 64780152 G T AFTPH Missense_Mutation p.R515I 0.37 tolerated(0.18) benign(0.419) TCGA-AA-3984-01 2 65298992 65298992 C A CEP68 Missense_Mutation p.F254L 0.21 tolerated(0.84) benign(0.017) TCGA-AA-3984-01 2 65561755 65561755 G A SPRED2 Silent p.I119I 0.22 TCGA-AA-3984-01 2 68274430 68274430 C A C1D Nonsense_Mutation p.E5* 0.24 TCGA-AA-3984-01 2 68408079 68408079 T C PPP3R1 3'UTR 0.12 TCGA-AA-3984-01 2 68413766 68413766 T C PPP3R1 Missense_Mutation p.D100G 0.31 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 2 68544315 68544315 G A CNRIP1 Missense_Mutation p.R102W 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 2 68882144 68882144 C T PROKR1 Silent p.L206L 0.27 TCGA-AA-3984-01 2 69040533 69040533 G A ARHGAP25 Silent p.T263T 0.40 TCGA-AA-3984-01 2 69053363 69053363 G T ARHGAP25 3'UTR 0.25 TCGA-AA-3984-01 2 69092820 69092820 G A BMP10 Silent p.V406V 0.30 TCGA-AA-3984-01 2 69709792 69709792 A C AAK1 Intron 0.26 TCGA-AA-3984-01 2 70188127 70188127 C T ASPRV1 Missense_Mutation p.D232N 0.17 tolerated(0.16) possibly_damaging(0.683) TCGA-AA-3984-01 2 70316144 70316144 T G PCBP1 3'UTR 0.29 TCGA-AA-3984-01 2 70444051 70444051 G A TIA1 Nonsense_Mutation p.R184* 0.11 TCGA-AA-3984-01 2 70900018 70900018 G A ADD2 Missense_Mutation p.S621F 0.21 deleterious(0.03) benign(0.191) TCGA-AA-3984-01 2 70900409 70900409 G T ADD2 Intron 0.28 TCGA-AA-3984-01 2 71189973 71189973 G T ATP6V1B1 Missense_Mutation p.E284D 0.23 tolerated(0.51) benign(0.06) TCGA-AA-3984-01 2 71300652 71300652 C T NAGK Silent p.D215D 0.35 TCGA-AA-3984-01 2 71360606 71360606 G A MPHOSPH10 Missense_Mutation p.R223Q 0.26 tolerated(0.5) benign(0.003) TCGA-AA-3984-01 2 71376534 71376534 C T MPHOSPH10 Missense_Mutation p.S616L 0.08 tolerated(0.43) benign(0.044) TCGA-AA-3984-01 2 71631047 71631047 T G ZNF638 Missense_Mutation p.F959L 0.31 deleterious(0.05) possibly_damaging(0.85) TCGA-AA-3984-01 2 71662042 71662042 C T ZNF638 3'UTR 0.14 TCGA-AA-3984-01 2 71816813 71816813 G A DYSF Missense_Mutation p.D1165N 0.26 tolerated(0.06) benign(0.152) TCGA-AA-3984-01 2 73447196 73447196 A G SMYD5 Missense_Mutation p.R75G 0.25 deleterious(0) possibly_damaging(0.907) TCGA-AA-3984-01 2 73635812 73635812 A C ALMS1 Missense_Mutation p.Q129H 0.34 possibly_damaging(0.756) TCGA-AA-3984-01 2 73718581 73718581 C T ALMS1 Silent p.F3164F 0.26 TCGA-AA-3984-01 2 73828334 73828334 T G ALMS1 Missense_Mutation p.F3961C 0.34 probably_damaging(1) TCGA-AA-3984-01 2 74043282 74043282 C T C2orf78 Silent p.I644I 0.10 TCGA-AA-3984-01 2 74043806 74043806 C A C2orf78 Missense_Mutation p.S819Y 0.10 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 2 74437140 74437140 T C MTHFD2 Silent p.L212L 0.20 TCGA-AA-3984-01 2 74590132 74590132 C T DCTN1 Missense_Mutation p.R1173H 0.24 tolerated(0.18) benign(0.001) TCGA-AA-3984-01 2 74594189 74594189 G A DCTN1 Silent p.L767L 0.28 TCGA-AA-3984-01 2 74683363 74683363 G T INO80B Missense_Mutation p.K168N 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-AA-3984-01 2 74733988 74733988 A G PCGF1 Missense_Mutation p.Y75H 0.23 tolerated(0.44) possibly_damaging(0.88) TCGA-AA-3984-01 2 75116439 75116439 G A HK2 Missense_Mutation p.D815N 0.08 deleterious(0.01) benign(0.068) TCGA-AA-3984-01 2 77746014 77746014 C A LRRTM4 Missense_Mutation p.K327N 0.16 tolerated(0.19) possibly_damaging(0.663) TCGA-AA-3984-01 2 79348754 79348754 G A REG1A Missense_Mutation p.R44H 0.30 deleterious(0.03) benign(0.003) TCGA-AA-3984-01 2 80646682 80646682 G T CTNNA2 Nonsense_Mutation p.E416* 0.34 TCGA-AA-3984-01 2 84936514 84936514 C T DNAH6 Silent p.I3032I 0.30 TCGA-AA-3984-01 2 84940286 84940286 G A DNAH6 Missense_Mutation p.R3149Q 0.09 deleterious(0) benign(0.296) TCGA-AA-3984-01 2 85012875 85012875 A G DNAH6 Missense_Mutation p.I3699V 0.16 tolerated(0.16) benign(0.074) TCGA-AA-3984-01 2 86080091 86080091 G T ST3GAL5 Intron 0.30 TCGA-AA-3984-01 2 86305282 86305282 G A POLR1A Silent p.S404S 0.07 TCGA-AA-3984-01 2 86315956 86315956 G A POLR1A Missense_Mutation p.A193V 0.30 tolerated(0.29) benign(0.392) TCGA-AA-3984-01 2 86756490 86756490 C T RNF103-CHMP3 Missense_Mutation p.R75Q 0.31 tolerated(0.46) benign(0.021) TCGA-AA-3984-01 2 86832111 86832111 C T RNF103 Missense_Mutation p.E305K 0.08 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 2 87042763 87042763 C A CD8B Missense_Mutation p.Q233H 0.26 tolerated_low_confidence(0.09) benign(0.387) TCGA-AA-3984-01 2 88828578 88828578 G T TEX37 Missense_Mutation p.K43N 0.29 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-AA-3984-01 2 89082398 89082398 C T ANKRD36BP2 RNA 0.24 TCGA-AA-3984-01 2 89103980 89103980 G A ANKRD36BP2 RNA 0.27 TCGA-AA-3984-01 2 89104076 89104076 A C ANKRD36BP2 RNA 0.22 TCGA-AA-3984-01 2 89185535 89185535 G A IGKV4-1 Missense_Mutation p.A77T 0.27 tolerated(0.05) possibly_damaging(0.749) TCGA-AA-3984-01 2 89568182 89568182 G T IGKV1-33 Silent p.L17L 0.36 TCGA-AA-3984-01 2 89999408 89999408 G T IGKV2D-28 Missense_Mutation p.Q70H 0.20 deleterious(0) benign(0.024) TCGA-AA-3984-01 2 90154251 90154251 A G IGKV3D-15 Missense_Mutation p.N113S 0.27 tolerated(1) benign(0.001) TCGA-AA-3984-01 2 90199169 90199169 T C IGKV1D-12 Silent p.C110C 0.17 TCGA-AA-3984-01 2 9528661 9528661 G A ASAP2 Missense_Mutation p.R790Q 0.24 tolerated(0.21) probably_damaging(0.946) TCGA-AA-3984-01 2 9547082 9547082 C T ITGB1BP1 Intron 0.15 TCGA-AA-3984-01 2 9547568 9547568 G A ITGB1BP1 Intron 0.27 TCGA-AA-3984-01 2 95540626 95540626 C T TEKT4 Silent p.I273I 0.23 TCGA-AA-3984-01 2 9570054 9570054 C T CPSF3 Silent p.L39L 0.27 TCGA-AA-3984-01 2 95715346 95715346 C T MAL Silent p.T94T 0.30 TCGA-AA-3984-01 2 95843296 95843296 A G ZNF2 Missense_Mutation p.I34M 0.18 tolerated(0.06) benign(0.031) TCGA-AA-3984-01 2 95847829 95847829 G A ZNF2 Missense_Mutation p.R419H 0.10 deleterious(0.01) possibly_damaging(0.861) TCGA-AA-3984-01 2 95945632 95945632 C T PROM2 Silent p.F438F 0.24 TCGA-AA-3984-01 2 96260800 96260800 G T TRIM43 Missense_Mutation p.E138D 0.27 deleterious(0.04) benign(0.267) TCGA-AA-3984-01 2 9634834 9634834 C T ADAM17 Missense_Mutation p.D616N 0.25 tolerated(0.17) benign(0.002) TCGA-AA-3984-01 2 96579897 96579897 T G ANKRD36C Missense_Mutation p.N837T 0.15 deleterious_low_confidence(0.04) probably_damaging(0.945) TCGA-AA-3984-01 2 96686899 96686899 C T GPAT2 3'Flank 0.10 TCGA-AA-3984-01 2 96952493 96952493 G A SNRNP200 Silent p.F1254F 0.28 TCGA-AA-3984-01 2 96965102 96965102 C T SNRNP200 Missense_Mutation p.D232N 0.22 tolerated(0.16) benign(0.039) TCGA-AA-3984-01 2 97335961 97335961 T A FER1L5 RNA 0.09 TCGA-AA-3984-01 2 97338900 97338900 C T FER1L5 RNA 0.24 TCGA-AA-3984-01 2 97355054 97355054 T G FER1L5 RNA 0.11 TCGA-AA-3984-01 2 97541992 97541992 G A FAM178B 3'UTR 0.40 TCGA-AA-3984-01 2 98375486 98375486 G A TMEM131 Missense_Mutation p.S1746L 0.27 deleterious_low_confidence(0.01) benign(0.143) TCGA-AA-3984-01 2 98709561 98709561 G T VWA3B Missense_Mutation p.E2D 0.33 deleterious_low_confidence(0.03) benign(0.445) TCGA-AA-3984-01 2 99226430 99226430 C T UNC50 Nonsense_Mutation p.R70* 0.34 TCGA-AA-3984-01 2 99449342 99449342 G A KIAA1211L Missense_Mutation p.R120W 0.09 deleterious(0) possibly_damaging(0.835) TCGA-AA-3984-01 2 99778612 99778612 C A LIPT1 Missense_Mutation p.F64L 0.21 tolerated(1) benign(0.027) TCGA-AA-3984-01 2 99977938 99977938 G T EIF5B Nonsense_Mutation p.E192* 0.27 TCGA-AA-3984-01 3 100039811 100039811 G A TBC1D23 Missense_Mutation p.E672K 0.10 deleterious(0.01) possibly_damaging(0.492) TCGA-AA-3984-01 3 10015337 10015337 C T EMC3 Missense_Mutation p.E157K 0.07 tolerated(0.07) possibly_damaging(0.647) TCGA-AA-3984-01 3 100238442 100238442 A G TMEM45A Intron 0.12 TCGA-AA-3984-01 3 100365425 100365425 G T GPR128 Nonsense_Mutation p.E375* 0.29 TCGA-AA-3984-01 3 100451455 100451455 C A TFG Missense_Mutation p.N173K 0.29 tolerated(0.06) benign(0.04) TCGA-AA-3984-01 3 100469277 100469277 G A ABI3BP 3'UTR 0.20 TCGA-AA-3984-01 3 100497215 100497215 G A ABI3BP Missense_Mutation p.R705C 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-AA-3984-01 3 100508360 100508360 G A ABI3BP Missense_Mutation p.A656V 0.24 tolerated(0.08) probably_damaging(0.935) TCGA-AA-3984-01 3 100570743 100570743 G A ABI3BP Missense_Mutation p.P401S 0.38 deleterious(0.05) possibly_damaging(0.641) TCGA-AA-3984-01 3 100605154 100605154 G A ABI3BP Missense_Mutation p.R166C 0.28 deleterious(0) possibly_damaging(0.689) TCGA-AA-3984-01 3 10076460 10076460 C T FANCD2 Missense_Mutation p.R119C 0.22 deleterious(0.04) benign(0.157) TCGA-AA-3984-01 3 100962570 100962570 A G IMPG2 Missense_Mutation p.S869P 0.11 tolerated(0.13) benign(0.013) TCGA-AA-3984-01 3 101051657 101051657 T G SENP7 Missense_Mutation p.N844H 0.28 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 3 101090959 101090959 C T SENP7 Missense_Mutation p.R230Q 0.35 tolerated(0.3) benign(0.001) TCGA-AA-3984-01 3 101117878 101117878 C T SENP7 Silent p.T168T 0.07 TCGA-AA-3984-01 3 101284212 101284212 C T TRMT10C Missense_Mutation p.A196V 0.31 tolerated(0.2) benign(0.224) TCGA-AA-3984-01 3 101540904 101540904 A C NXPE3 3'UTR 0.35 TCGA-AA-3984-01 3 10264444 10264444 G A IRAK2 Missense_Mutation p.A380T 0.09 tolerated(0.35) probably_damaging(0.927) TCGA-AA-3984-01 3 10387721 10387721 G A ATP2B2 Silent p.F835F 0.31 TCGA-AA-3984-01 3 105438956 105438956 C T CBLB Missense_Mutation p.D448N 0.23 deleterious(0.02) probably_damaging(0.968) TCGA-AA-3984-01 3 107096741 107096741 A C CCDC54 Missense_Mutation p.K103Q 0.10 deleterious(0.01) probably_damaging(0.944) TCGA-AA-3984-01 3 107492007 107492007 A G BBX Missense_Mutation p.E480G 0.20 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 3 107881157 107881157 T C IFT57 3'UTR 0.36 TCGA-AA-3984-01 3 108110651 108110651 C T MYH15 Missense_Mutation p.A1816T 0.28 deleterious(0.03) benign(0.054) TCGA-AA-3984-01 3 108127208 108127208 C A MYH15 Missense_Mutation p.K1533N 0.11 deleterious(0) possibly_damaging(0.784) TCGA-AA-3984-01 3 108147656 108147656 C T MYH15 Missense_Mutation p.A1149T 0.10 tolerated(0.11) benign(0.065) TCGA-AA-3984-01 3 108219109 108219109 G T MYH15 Missense_Mutation p.L138I 0.29 deleterious(0.01) benign(0.084) TCGA-AA-3984-01 3 108220662 108220662 G T MYH15 Missense_Mutation p.P99H 0.31 deleterious(0) probably_damaging(0.92) TCGA-AA-3984-01 3 108269902 108269902 G A KIAA1524 3'UTR 0.55 TCGA-AA-3984-01 3 108361336 108361336 G T DZIP3 Missense_Mutation p.K372N 0.08 deleterious_low_confidence(0) possibly_damaging(0.511) TCGA-AA-3984-01 3 108677748 108677748 A C MORC1 3'UTR 0.33 TCGA-AA-3984-01 3 108725931 108725931 A C MORC1 Missense_Mutation p.F571C 0.19 deleterious(0) possibly_damaging(0.885) TCGA-AA-3984-01 3 108754295 108754295 A G MORC1 Missense_Mutation p.F451L 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 3 108788485 108788485 C T MORC1 Missense_Mutation p.R270K 0.23 tolerated(0.97) benign(0.012) TCGA-AA-3984-01 3 109046685 109046685 G T DPPA4 3'UTR 0.28 TCGA-AA-3984-01 3 11076225 11076225 C A SLC6A1 Missense_Mutation p.F512L 0.41 tolerated(0.08) possibly_damaging(0.458) TCGA-AA-3984-01 3 111313359 111313359 C A ZBED2 5'UTR 0.16 TCGA-AA-3984-01 3 111604254 111604254 C T PHLDB2 Nonsense_Mutation p.R444* 0.28 TCGA-AA-3984-01 3 111782478 111782478 C T TMPRSS7 Silent p.C392C 0.07 TCGA-AA-3984-01 3 111795940 111795940 C T TMPRSS7 Missense_Mutation p.R599C 0.18 tolerated(0.18) possibly_damaging(0.54) TCGA-AA-3984-01 3 111800007 111800007 C T TMPRSS7 3'UTR 0.10 TCGA-AA-3984-01 3 111898522 111898522 C T SLC9C1 Silent p.G925G 0.10 TCGA-AA-3984-01 3 111927208 111927208 A G SLC9C1 Silent p.F601F 0.22 TCGA-AA-3984-01 3 112534694 112534694 G A CD200R1L 3'UTR 0.33 TCGA-AA-3984-01 3 113004335 113004335 C A BOC Missense_Mutation p.A1027D 0.22 tolerated_low_confidence(0.29) benign(0.097) TCGA-AA-3984-01 3 113187238 113187238 C T SPICE1 Silent p.P301P 0.30 TCGA-AA-3984-01 3 113225396 113225396 C T SPICE1 Silent p.P19P 0.11 TCGA-AA-3984-01 3 113374077 113374077 C T KIAA2018 Missense_Mutation p.R2151Q 0.08 probably_damaging(0.997) TCGA-AA-3984-01 3 113378722 113378722 G A KIAA2018 Nonsense_Mutation p.R603* 0.29 TCGA-AA-3984-01 3 113507703 113507703 T C ATP6V1A Missense_Mutation p.V287A 0.11 deleterious(0) possibly_damaging(0.793) TCGA-AA-3984-01 3 113655219 113655219 A C GRAMD1C Missense_Mutation p.E521D 0.28 tolerated(0.19) benign(0.109) TCGA-AA-3984-01 3 113667761 113667761 G A ZDHHC23 Missense_Mutation p.V38M 0.07 tolerated(0.17) benign(0.054) TCGA-AA-3984-01 3 113673064 113673064 G A ZDHHC23 Missense_Mutation p.A227T 0.37 tolerated(0.3) benign(0.013) TCGA-AA-3984-01 3 11606467 11606467 C T VGLL4 Missense_Mutation p.R100H 0.22 deleterious(0.04) probably_damaging(0.924) TCGA-AA-3984-01 3 1189669 1189669 A C CNTN6 5'UTR 0.19 TCGA-AA-3984-01 3 119334938 119334938 C T PLA1A Silent p.F248F 0.19 TCGA-AA-3984-01 3 119595322 119595322 C A GSK3B Nonsense_Mutation p.E283* 0.32 TCGA-AA-3984-01 3 120319976 120319976 C T NDUFB4 Missense_Mutation p.R67C 0.18 deleterious(0.04) benign(0.219) TCGA-AA-3984-01 3 120363183 120363183 G A HGD Silent p.L253L 0.28 TCGA-AA-3984-01 3 120760617 120760617 T G STXBP5L Missense_Mutation p.L120V 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-AA-3984-01 3 120957933 120957933 G A STXBP5L Missense_Mutation p.V434I 0.30 tolerated(0.1) benign(0.217) TCGA-AA-3984-01 3 121206422 121206422 T G POLQ Missense_Mutation p.S1786R 0.29 tolerated(0.17) benign(0.003) TCGA-AA-3984-01 3 121410512 121410512 T G GOLGB1 Missense_Mutation p.N2567H 0.10 possibly_damaging(0.882) TCGA-AA-3984-01 3 121414503 121414503 G T GOLGB1 Missense_Mutation p.L1623I 0.34 probably_damaging(0.999) TCGA-AA-3984-01 3 121415676 121415676 C A GOLGB1 Nonsense_Mutation p.E1232* 0.31 TCGA-AA-3984-01 3 121433752 121433752 C T GOLGB1 Missense_Mutation p.A454T 0.20 benign(0.381) TCGA-AA-3984-01 3 121575996 121575996 C T EAF2 Silent p.I159I 0.10 TCGA-AA-3984-01 3 121613251 121613251 G T SLC15A2 5'UTR 0.31 TCGA-AA-3984-01 3 12182164 12182164 C T SYN2 RNA 0.25 TCGA-AA-3984-01 3 121822612 121822612 C T CD86 Silent p.G106G 0.07 TCGA-AA-3984-01 3 122087097 122087097 T G CCDC58 Missense_Mutation p.N84H 0.27 tolerated(0.12) benign(0.002) TCGA-AA-3984-01 3 122134805 122134805 A G WDR5B 5'UTR 0.26 TCGA-AA-3984-01 3 122215306 122215306 C T KPNA1 Missense_Mutation p.R36Q 0.12 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 3 122215385 122215385 G A KPNA1 Missense_Mutation p.R10C 0.28 deleterious(0) probably_damaging(0.952) TCGA-AA-3984-01 3 12225002 12225002 C T SYN2 RNA 0.27 TCGA-AA-3984-01 3 122284753 122284753 G A DTX3L Missense_Mutation p.E79K 0.08 tolerated(0.57) benign(0.002) TCGA-AA-3984-01 3 122332028 122332028 C T PARP15 Silent p.F228F 0.31 TCGA-AA-3984-01 3 122351038 122351038 G A PARP15 Missense_Mutation p.R515Q 0.27 tolerated(1) benign(0) TCGA-AA-3984-01 3 123018992 123018992 C T ADCY5 Missense_Mutation p.D959N 0.31 tolerated(0.06) possibly_damaging(0.895) TCGA-AA-3984-01 3 124376626 124376626 A G KALRN Silent p.R95R 0.21 TCGA-AA-3984-01 3 124390733 124390733 C T KALRN Silent p.F401F 0.27 TCGA-AA-3984-01 3 124482558 124482558 T G ITGB5 Missense_Mutation p.N771T 0.24 deleterious(0) possibly_damaging(0.794) TCGA-AA-3984-01 3 124627180 124627180 C T MUC13 Silent p.T450T 0.28 TCGA-AA-3984-01 3 124739746 124739746 G A HEG1 Missense_Mutation p.S381L 0.10 tolerated(0.49) benign(0.001) TCGA-AA-3984-01 3 124839483 124839483 C T SLC12A8 Missense_Mutation p.A262T 0.18 tolerated(0.99) benign(0.009) TCGA-AA-3984-01 3 125831713 125831713 G T ALDH1L1 Missense_Mutation p.S708Y 0.12 deleterious(0.01) probably_damaging(0.924) TCGA-AA-3984-01 3 125872425 125872425 C A ALDH1L1 Splice_Site p.X251_splice 0.25 TCGA-AA-3984-01 3 126071725 126071725 G A KLF15 Missense_Mutation p.S14L 0.30 tolerated_low_confidence(0.41) benign(0.21) TCGA-AA-3984-01 3 126155381 126155381 A G CCDC37 3'UTR 0.20 TCGA-AA-3984-01 3 126261299 126261299 G A CHST13 Missense_Mutation p.D302N 0.32 tolerated(0.19) possibly_damaging(0.784) TCGA-AA-3984-01 3 127641980 127641980 G T KBTBD12 Nonsense_Mutation p.E26* 0.23 TCGA-AA-3984-01 3 127642661 127642661 G A KBTBD12 Missense_Mutation p.A253T 0.20 deleterious(0.04) benign(0.047) TCGA-AA-3984-01 3 127788428 127788428 A G SEC61A1 Missense_Mutation p.T452A 0.23 deleterious(0) possibly_damaging(0.723) TCGA-AA-3984-01 3 128060396 128060396 C T EEFSEC Silent p.F369F 0.22 TCGA-AA-3984-01 3 128341088 128341088 C T RPN1 Silent p.E520E 0.24 TCGA-AA-3984-01 3 128356896 128356896 T C RPN1 Missense_Mutation p.I127V 0.29 tolerated(1) benign(0.006) TCGA-AA-3984-01 3 128525321 128525321 T G RAB7A Missense_Mutation p.F96C 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 12854812 12854812 G A CAND2 Missense_Mutation p.D311N 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 3 128853750 128853750 C T ISY1 Missense_Mutation p.D178N 0.30 tolerated(0.1) possibly_damaging(0.556) TCGA-AA-3984-01 3 129151983 129151983 C T MBD4 Missense_Mutation p.G507S 0.36 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 3 129177448 129177448 G A IFT122 Missense_Mutation p.R67H 0.30 deleterious(0.01) benign(0.446) TCGA-AA-3984-01 3 129238428 129238428 C T IFT122 Silent p.F1214F 0.14 TCGA-AA-3984-01 3 129284254 129284254 G A PLXND1 Missense_Mutation p.R1484W 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 129289655 129289655 C T PLXND1 Missense_Mutation p.A1242T 0.32 tolerated(0.93) benign(0) TCGA-AA-3984-01 3 129290605 129290605 G A PLXND1 Missense_Mutation p.R1054W 0.10 deleterious(0) possibly_damaging(0.766) TCGA-AA-3984-01 3 130098585 130098585 G A COL6A5 Missense_Mutation p.G331D 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 130159223 130159223 C A COL6A5 Missense_Mutation p.S2014Y 0.27 deleterious(0) probably_damaging(0.95) TCGA-AA-3984-01 3 130283848 130283848 C T COL6A6 Silent p.G224G 0.29 TCGA-AA-3984-01 3 130287049 130287049 G A COL6A6 Missense_Mutation p.D668N 0.23 tolerated(0.26) benign(0.237) TCGA-AA-3984-01 3 130400418 130400418 C T PIK3R4 Missense_Mutation p.E1209K 0.31 deleterious(0.03) possibly_damaging(0.719) TCGA-AA-3984-01 3 130425801 130425801 A C PIK3R4 Silent p.T904T 0.28 TCGA-AA-3984-01 3 130425904 130425904 T G PIK3R4 Missense_Mutation p.N870T 0.36 tolerated(0.43) benign(0) TCGA-AA-3984-01 3 130449229 130449229 T G PIK3R4 Missense_Mutation p.K503T 0.36 tolerated(0.38) benign(0.021) TCGA-AA-3984-01 3 130452802 130452802 C T PIK3R4 Missense_Mutation p.R347Q 0.18 deleterious(0.04) benign(0.3) TCGA-AA-3984-01 3 130452912 130452912 C T PIK3R4 Silent p.Q310Q 0.25 TCGA-AA-3984-01 3 131082221 131082221 C T NUDT16P1 RNA 0.33 TCGA-AA-3984-01 3 132051046 132051046 G A ACPP Missense_Mutation p.R105Q 0.37 tolerated(0.39) benign(0.057) TCGA-AA-3984-01 3 132166294 132166294 G T DNAJC13 Nonsense_Mutation p.E92* 0.31 TCGA-AA-3984-01 3 132172958 132172958 G A DNAJC13 Missense_Mutation p.E297K 0.30 deleterious(0) benign(0.314) TCGA-AA-3984-01 3 132320487 132320487 A C ACKR4 3'UTR 0.30 TCGA-AA-3984-01 3 133558462 133558462 C A RAB6B Splice_Site p.X97_splice 0.09 TCGA-AA-3984-01 3 13417924 13417924 C T NUP210 Missense_Mutation p.R387Q 0.14 deleterious(0) possibly_damaging(0.709) TCGA-AA-3984-01 3 135741935 135741935 A G PPP2R3A Intron 0.28 TCGA-AA-3984-01 3 136117632 136117632 G A STAG1 Missense_Mutation p.L746F 0.17 deleterious(0.02) probably_damaging(0.974) TCGA-AA-3984-01 3 136261014 136261014 G A STAG1 Nonsense_Mutation p.R140* 0.11 TCGA-AA-3984-01 3 136574042 136574042 C A SLC35G2 Missense_Mutation p.S247Y 0.29 deleterious(0.02) probably_damaging(0.935) TCGA-AA-3984-01 3 1371514 1371514 T G CNTN6 Missense_Mutation p.F420C 0.06 tolerated(0.15) benign(0.389) TCGA-AA-3984-01 3 137822455 137822455 C T DZIP1L Missense_Mutation p.G120D 0.27 tolerated(0.54) probably_damaging(0.942) TCGA-AA-3984-01 3 137928678 137928678 G A ARMC8 Missense_Mutation p.R8H 0.21 deleterious(0) possibly_damaging(0.847) TCGA-AA-3984-01 3 137953896 137953896 T G ARMC8 Missense_Mutation p.I169M 0.29 tolerated(0.28) possibly_damaging(0.531) TCGA-AA-3984-01 3 138248264 138248264 C T CEP70 Missense_Mutation p.D245N 0.33 tolerated(0.33) benign(0.012) TCGA-AA-3984-01 3 138664444 138664444 A G FOXL2 Missense_Mutation p.L374P 0.10 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 3 138739247 138739247 G A PRR23B Missense_Mutation p.S86L 0.12 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 3 140167483 140167483 A C CLSTN2 Missense_Mutation p.N304H 0.10 deleterious(0.01) benign(0.289) TCGA-AA-3984-01 3 141162010 141162010 G A ZBTB38 Silent p.P260P 0.10 TCGA-AA-3984-01 3 1415408 1415408 G A CNTN6 Missense_Mutation p.R636Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 3 142137675 142137675 C T XRN1 Missense_Mutation p.E408K 0.22 tolerated(0.2) benign(0.003) TCGA-AA-3984-01 3 142166745 142166745 A C XRN1 Nonsense_Mutation p.Y14* 0.20 TCGA-AA-3984-01 3 142266743 142266743 C A ATR Nonsense_Mutation p.E1061* 0.24 TCGA-AA-3984-01 3 142274801 142274801 A G ATR Silent p.C753C 0.17 TCGA-AA-3984-01 3 142430384 142430384 A C PLS1 Silent p.I557I 0.30 TCGA-AA-3984-01 3 142499818 142499818 G A TRPC1 Missense_Mutation p.E303K 0.28 tolerated(0.14) benign(0.156) TCGA-AA-3984-01 3 142773838 142773838 G A U2SURP Missense_Mutation p.R943Q 0.22 tolerated(0.16) unknown(0) TCGA-AA-3984-01 3 143185997 143185997 G A SLC9A9 Missense_Mutation p.R451W 0.30 deleterious(0) probably_damaging(0.94) TCGA-AA-3984-01 3 143515699 143515699 A C SLC9A9 Missense_Mutation p.I142S 0.07 deleterious(0) possibly_damaging(0.538) TCGA-AA-3984-01 3 143704674 143704674 G T C3orf58 Missense_Mutation p.R316I 0.16 tolerated(0.06) benign(0.055) TCGA-AA-3984-01 3 1444107 1444107 A C CNTN6 Silent p.R975R 0.31 TCGA-AA-3984-01 3 1445053 1445053 C A CNTN6 Missense_Mutation p.S1013Y 0.13 tolerated(0.06) benign(0.429) TCGA-AA-3984-01 3 145809604 145809604 C T PLOD2 Missense_Mutation p.D288N 0.24 tolerated(0.21) benign(0.087) TCGA-AA-3984-01 3 146176228 146176228 G T PLSCR2 Missense_Mutation p.L97I 0.26 tolerated(0.15) possibly_damaging(0.903) TCGA-AA-3984-01 3 146239417 146239417 T C PLSCR1 Missense_Mutation p.T218A 0.29 tolerated(0.08) benign(0.093) TCGA-AA-3984-01 3 146307445 146307445 G T PLSCR5 Missense_Mutation p.L258I 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 3 14697119 14697119 G T CCDC174 Missense_Mutation p.K77N 0.24 tolerated(0.47) possibly_damaging(0.5) TCGA-AA-3984-01 3 14708359 14708359 G T CCDC174 Missense_Mutation p.R210I 0.30 deleterious(0.04) benign(0.006) TCGA-AA-3984-01 3 147108958 147108958 G A ZIC4 Missense_Mutation p.S305L 0.31 deleterious(0.01) probably_damaging(0.921) TCGA-AA-3984-01 3 14861003 14861003 C T FGD5 Missense_Mutation p.A142V 0.34 tolerated_low_confidence(0.14) benign(0.014) TCGA-AA-3984-01 3 148614604 148614604 C A CPA3 3'UTR 0.32 TCGA-AA-3984-01 3 148896375 148896375 C A CP Missense_Mutation p.R902I 0.31 deleterious(0) benign(0.022) TCGA-AA-3984-01 3 148930456 148930456 C T CP Missense_Mutation p.G59D 0.31 tolerated(0.16) benign(0.091) TCGA-AA-3984-01 3 149087587 149087587 A G TM4SF1 3'UTR 0.30 TCGA-AA-3984-01 3 149374980 149374980 C T WWTR1 Silent p.P38P 0.22 TCGA-AA-3984-01 3 149510174 149510175 - A ANKUB1 5'UTR 0.18 TCGA-AA-3984-01 3 150460159 150460159 G A SIAH2 Silent p.I248I 0.34 TCGA-AA-3984-01 3 150644694 150644694 A C CLRN1 3'Flank 0.29 TCGA-AA-3984-01 3 150931150 150931150 C G P2RY14 Missense_Mutation p.D319H 0.29 tolerated(0.09) benign(0.236) TCGA-AA-3984-01 3 150931716 150931716 G T P2RY14 Missense_Mutation p.S130Y 0.37 tolerated(1) possibly_damaging(0.882) TCGA-AA-3984-01 3 151046337 151046337 G T P2RY13 Missense_Mutation p.F169L 0.29 tolerated(1) benign(0.001) TCGA-AA-3984-01 3 151056498 151056498 C T P2RY12 Missense_Mutation p.A46T 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 3 151082823 151082823 C T MED12L Missense_Mutation p.S970L 0.22 tolerated(0.13) benign(0.095) TCGA-AA-3984-01 3 151094789 151094789 C T MED12L Missense_Mutation p.S1345F 0.15 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 3 151154763 151154763 C T IGSF10 Missense_Mutation p.R2529Q 0.29 deleterious(0.02) possibly_damaging(0.863) TCGA-AA-3984-01 3 151155165 151155165 G T IGSF10 Missense_Mutation p.S2395Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 3 151164233 151164233 G A IGSF10 Missense_Mutation p.S1179L 0.29 tolerated(0.37) benign(0.004) TCGA-AA-3984-01 3 151451783 151451783 T G AADACL2 5'UTR 0.10 TCGA-AA-3984-01 3 152017974 152017974 A C MBNL1 5'UTR 0.26 TCGA-AA-3984-01 3 152555835 152555835 C T P2RY1 3'UTR 0.09 TCGA-AA-3984-01 3 15283696 15283696 G A CAPN7 Silent p.A600A 0.25 TCGA-AA-3984-01 3 152883486 152883486 T G RAP2B 3'UTR 0.31 TCGA-AA-3984-01 3 153905592 153905592 G T ARHGEF26 Nonsense_Mutation p.E536* 0.16 TCGA-AA-3984-01 3 155199956 155199956 C T PLCH1 Missense_Mutation p.A1295T 0.11 tolerated_low_confidence(0.62) benign(0.003) TCGA-AA-3984-01 3 155282900 155282900 C T PLCH1 Silent p.T279T 0.23 TCGA-AA-3984-01 3 155393997 155393997 C T PLCH1 5'Flank 0.43 TCGA-AA-3984-01 3 155546024 155546024 G A SLC33A1 Missense_Mutation p.S542L 0.20 tolerated(0.14) benign(0.209) TCGA-AA-3984-01 3 155571418 155571418 T C SLC33A1 Silent p.L123L 0.11 TCGA-AA-3984-01 3 155628621 155628621 G T GMPS Nonsense_Mutation p.E223* 0.37 TCGA-AA-3984-01 3 157160325 157160325 G T PTX3 Nonsense_Mutation p.E235* 0.07 TCGA-AA-3984-01 3 15726951 15726951 G A ANKRD28 Missense_Mutation p.A694V 0.31 tolerated(0.45) benign(0.046) TCGA-AA-3984-01 3 157820542 157820542 G A SHOX2 Silent p.D184D 0.10 TCGA-AA-3984-01 3 158310267 158310267 G T MLF1 Missense_Mutation p.R47I 0.11 deleterious(0) probably_damaging(0.952) TCGA-AA-3984-01 3 158415600 158415600 C T RARRES1 Missense_Mutation p.R251H 0.28 tolerated(0.99) benign(0.009) TCGA-AA-3984-01 3 158543806 158543806 T C MFSD1 Missense_Mutation p.S480P 0.07 deleterious(0.01) possibly_damaging(0.708) TCGA-AA-3984-01 3 159706876 159706876 G A IL12A Silent p.P11P 0.11 TCGA-AA-3984-01 3 159706989 159706989 G C IL12A Intron 0.26 TCGA-AA-3984-01 3 160120467 160120467 T G SMC4 Missense_Mutation p.F108V 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 3 160141270 160141270 T G SMC4 Missense_Mutation p.L693V 0.26 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 3 160249325 160249325 C T KPNA4 Missense_Mutation p.R103Q 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3984-01 3 160254612 160254612 C T KPNA4 Missense_Mutation p.R29Q 0.24 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 3 160395112 160395112 G T ARL14 5'UTR 0.34 TCGA-AA-3984-01 3 160786805 160786805 C T PPM1L Nonsense_Mutation p.R315* 0.30 TCGA-AA-3984-01 3 160786956 160786956 G A PPM1L 3'UTR 0.55 TCGA-AA-3984-01 3 160952521 160952521 A C NMD3 Missense_Mutation p.N122H 0.32 tolerated(0.11) probably_damaging(0.975) TCGA-AA-3984-01 3 161216973 161216973 G A OTOL1 Missense_Mutation p.A127T 0.11 tolerated(0.73) unknown(0) TCGA-AA-3984-01 3 16343305 16343305 G T OXNAD1 Missense_Mutation p.R202I 0.13 deleterious(0.01) benign(0.063) TCGA-AA-3984-01 3 16358729 16358729 C T RFTN1 Missense_Mutation p.R448Q 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3984-01 3 16419324 16419324 C A RFTN1 Nonsense_Mutation p.E243* 0.25 TCGA-AA-3984-01 3 164716339 164716339 T G SI Missense_Mutation p.K1510T 0.28 tolerated(0.09) probably_damaging(0.995) TCGA-AA-3984-01 3 164776869 164776869 T C SI Missense_Mutation p.D427G 0.33 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 3 167023707 167023707 G A ZBBX Silent p.I483I 0.26 TCGA-AA-3984-01 3 167320054 167320054 C T WDR49 Missense_Mutation p.G38D 0.09 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 3 169496856 169496856 G A MYNN Silent p.P189P 0.34 TCGA-AA-3984-01 3 169525412 169525412 G T LRRC34 Missense_Mutation p.L115I 0.29 deleterious(0.04) possibly_damaging(0.596) TCGA-AA-3984-01 3 169525420 169525420 A C LRRC34 Missense_Mutation p.F112C 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-AA-3984-01 3 169550871 169550871 A C LRRIQ4 Missense_Mutation p.N477T 0.27 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 3 169557835 169557835 C T LRRC31 Missense_Mutation p.E532K 0.25 tolerated(0.23) benign(0.018) TCGA-AA-3984-01 3 169587528 169587528 T G LRRC31 Missense_Mutation p.K23T 0.23 deleterious(0.01) benign(0.055) TCGA-AA-3984-01 3 169663652 169663652 G A RP11-379K17.4 RNA 0.38 TCGA-AA-3984-01 3 170013719 170013719 C T PRKCI Missense_Mutation p.R480C 0.26 tolerated(0.06) possibly_damaging(0.719) TCGA-AA-3984-01 3 170108927 170108927 G T SKIL Missense_Mutation p.R592I 0.05 deleterious(0) possibly_damaging(0.739) TCGA-AA-3984-01 3 170150621 170150621 G A CLDN11 3'UTR 0.22 TCGA-AA-3984-01 3 17051891 17051891 T G PLCL2 Missense_Mutation p.F225L 0.22 tolerated(0.23) benign(0.163) TCGA-AA-3984-01 3 170732302 170732302 C A SLC2A2 Missense_Mutation p.M109I 0.36 tolerated(0.1) benign(0.31) TCGA-AA-3984-01 3 170744541 170744541 G A SLC2A2 5'Flank 0.12 TCGA-AA-3984-01 3 170781645 170781645 A C TNIK 3'UTR 0.26 TCGA-AA-3984-01 3 170802112 170802112 G A TNIK Silent p.L1001L 0.20 TCGA-AA-3984-01 3 170828506 170828506 G A TNIK Nonsense_Mutation p.R761* 0.14 TCGA-AA-3984-01 3 171330213 171330213 T C PLD1 Missense_Mutation p.N913S 0.29 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 3 171410196 171410196 C T PLD1 Missense_Mutation p.E422K 0.22 deleterious(0) probably_damaging(0.93) TCGA-AA-3984-01 3 172351822 172351822 G T NCEH1 Missense_Mutation p.L264I 0.28 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 3 172525643 172525643 G T ECT2 Nonsense_Mutation p.E777* 0.20 TCGA-AA-3984-01 3 172525680 172525680 G A ECT2 Missense_Mutation p.R789Q 0.17 tolerated(0.05) probably_damaging(0.997) TCGA-AA-3984-01 3 172533489 172533489 G A ECT2 Silent p.K832K 0.29 TCGA-AA-3984-01 3 174577187 174577187 G T NAALADL2 5'UTR 0.26 TCGA-AA-3984-01 3 176769432 176769432 T G TBL1XR1 Missense_Mutation p.Q96P 0.29 tolerated(0.12) benign(0.01) TCGA-AA-3984-01 3 176769482 176769483 CT - TBL1XR1 Frame_Shift_Del p.E79Vfs*11 0.23 TCGA-AA-3984-01 3 178560810 178560810 G A KCNMB2 3'UTR 0.25 TCGA-AA-3984-01 3 178742983 178742983 C A ZMAT3 Missense_Mutation p.R231I 0.19 deleterious(0.01) possibly_damaging(0.736) TCGA-AA-3984-01 3 178922301 178922301 G A PIK3CA Missense_Mutation p.R357Q 0.09 tolerated(0.09) possibly_damaging(0.69) TCGA-AA-3984-01 3 178948136 178948136 G A PIK3CA Missense_Mutation p.E970K 0.08 tolerated(0.51) benign(0.05) TCGA-AA-3984-01 3 179616000 179616000 G A PEX5L Missense_Mutation p.A43V 0.23 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 3 180359833 180359833 T C CCDC39 Missense_Mutation p.T608A 0.28 tolerated(0.81) benign(0.002) TCGA-AA-3984-01 3 180372685 180372685 C A CCDC39 Missense_Mutation p.K265N 0.08 deleterious(0) possibly_damaging(0.804) TCGA-AA-3984-01 3 180702478 180702478 C T DNAJC19 Missense_Mutation p.A101T 0.31 tolerated(0.53) benign(0.046) TCGA-AA-3984-01 3 181431597 181431597 A G SOX2 3'UTR 0.12 TCGA-AA-3984-01 3 181432071 181432071 G T SOX2 3'UTR 0.30 TCGA-AA-3984-01 3 182577031 182577031 G A ATP11B Missense_Mutation p.E362K 0.29 deleterious(0.02) probably_damaging(0.975) TCGA-AA-3984-01 3 182591746 182591746 T G ATP11B Missense_Mutation p.L732R 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 182923938 182923938 C T MCF2L2 Missense_Mutation p.R926Q 0.10 tolerated(0.18) benign(0.003) TCGA-AA-3984-01 3 183056614 183056614 G A MCF2L2 Nonsense_Mutation p.R154* 0.26 TCGA-AA-3984-01 3 183211899 183211899 T C KLHL6 Missense_Mutation p.T440A 0.18 tolerated(0.79) benign(0.002) TCGA-AA-3984-01 3 183670976 183670976 G A ABCC5 Silent p.G855G 0.41 TCGA-AA-3984-01 3 183689629 183689629 C A ABCC5 Missense_Mutation p.A495S 0.18 deleterious(0.01) possibly_damaging(0.721) TCGA-AA-3984-01 3 183823206 183823206 C T HTR3E Silent p.I263I 0.31 TCGA-AA-3984-01 3 183888325 183888325 C T DVL3 Missense_Mutation p.R645C 0.36 tolerated(0.07) possibly_damaging(0.898) TCGA-AA-3984-01 3 183956588 183956588 G A VWA5B2 Missense_Mutation p.R710H 0.32 deleterious(0.04) possibly_damaging(0.508) TCGA-AA-3984-01 3 184009212 184009212 C T ECE2 Silent p.F820F 0.32 TCGA-AA-3984-01 3 184024225 184024225 A C PSMD2 Missense_Mutation p.K631T 0.27 tolerated(0.16) benign(0.017) TCGA-AA-3984-01 3 184039307 184039307 G A EIF4G1 Missense_Mutation p.R319H 0.32 tolerated(0.14) benign(0.002) TCGA-AA-3984-01 3 185146660 185146660 G A MAP3K13 Silent p.V97V 0.31 TCGA-AA-3984-01 3 185906028 185906028 A G DGKG Silent p.G686G 0.23 TCGA-AA-3984-01 3 185986648 185986648 T A DGKG Missense_Mutation p.K353I 0.11 deleterious(0) probably_damaging(0.961) TCGA-AA-3984-01 3 186395525 186395525 T G HRG Missense_Mutation p.F477L 0.30 deleterious(0.01) possibly_damaging(0.669) TCGA-AA-3984-01 3 186459488 186459488 A C KNG1 Missense_Mutation p.K435Q 0.28 tolerated(0.16) benign(0.214) TCGA-AA-3984-01 3 187443345 187443345 C T BCL6 Missense_Mutation p.R594Q 0.19 deleterious(0.01) possibly_damaging(0.58) TCGA-AA-3984-01 3 189675701 189675701 T G LEPREL1 Nonstop_Mutation p.*709Yext*2 0.32 TCGA-AA-3984-01 3 191078923 191078923 G A CCDC50 Missense_Mutation p.R102Q 0.10 tolerated(0.25) possibly_damaging(0.625) TCGA-AA-3984-01 3 192993049 192993049 T G ATP13A5 Silent p.R1147R 0.34 TCGA-AA-3984-01 3 193120567 193120567 C A ATP13A4 Missense_Mutation p.Q1155H 0.08 deleterious(0.03) benign(0.016) TCGA-AA-3984-01 3 193176849 193176849 C A ATP13A4 Intron 0.32 TCGA-AA-3984-01 3 194063120 194063120 G T CPN2 Silent p.V104V 0.16 TCGA-AA-3984-01 3 194081448 194081448 C T LRRC15 Missense_Mutation p.A115T 0.35 tolerated(0.35) benign(0.338) TCGA-AA-3984-01 3 194118537 194118537 C T GP5 Missense_Mutation p.D159N 0.24 tolerated(0.13) benign(0.166) TCGA-AA-3984-01 3 194118664 194118664 C T GP5 Silent p.A116A 0.22 TCGA-AA-3984-01 3 195796389 195796389 T C TFRC Silent p.L246L 0.12 TCGA-AA-3984-01 3 196198721 196198721 A C RNF168 Missense_Mutation p.V562G 0.27 deleterious(0) benign(0.055) TCGA-AA-3984-01 3 196229836 196229836 G T RNF168 Missense_Mutation p.S70Y 0.33 deleterious(0) benign(0.285) TCGA-AA-3984-01 3 196612455 196612455 A C SENP5 Missense_Mutation p.N135H 0.28 deleterious_low_confidence(0.04) benign(0.332) TCGA-AA-3984-01 3 196737602 196737602 C T MFI2 Missense_Mutation p.G433S 0.08 deleterious(0.03) possibly_damaging(0.577) TCGA-AA-3984-01 3 197427525 197427525 C T KIAA0226 Missense_Mutation p.R407H 0.28 deleterious(0) probably_damaging(0.981) TCGA-AA-3984-01 3 197483318 197483318 G A FYTTD1 Missense_Mutation p.R42Q 0.26 deleterious(0.05) benign(0.107) TCGA-AA-3984-01 3 197559084 197559084 C A LRCH3 Nonsense_Mutation p.S333* 0.29 TCGA-AA-3984-01 3 19956849 19956849 C A EFHB Nonsense_Mutation p.E412* 0.26 TCGA-AA-3984-01 3 19975022 19975022 G A EFHB Silent p.F163F 0.35 TCGA-AA-3984-01 3 19975203 19975203 G T EFHB Missense_Mutation p.S103Y 0.18 deleterious_low_confidence(0.05) benign(0.316) TCGA-AA-3984-01 3 20202665 20202665 G A SGOL1 Nonsense_Mutation p.R540* 0.06 TCGA-AA-3984-01 3 21462665 21462665 T G ZNF385D 3'UTR 0.40 TCGA-AA-3984-01 3 21552375 21552375 G T ZNF385D Silent p.I139I 0.29 TCGA-AA-3984-01 3 21552474 21552474 C A ZNF385D Missense_Mutation p.K106N 0.20 deleterious(0) probably_damaging(0.95) TCGA-AA-3984-01 3 23541165 23541165 C A UBE2E2 Silent p.V98V 0.28 TCGA-AA-3984-01 3 23997605 23997605 G A NR1D2 Missense_Mutation p.E121K 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 3 25470085 25470085 C T RARB 5'UTR 0.22 TCGA-AA-3984-01 3 25542760 25542760 C T RARB Nonsense_Mutation p.R132* 0.23 TCGA-AA-3984-01 3 25805745 25805745 G A NGLY1 Missense_Mutation p.R102C 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 3 26751336 26751336 T C LRRC3B Missense_Mutation p.I58T 0.11 deleterious(0.01) probably_damaging(0.954) TCGA-AA-3984-01 3 27387690 27387690 G A NEK10 Silent p.F50F 0.09 TCGA-AA-3984-01 3 27760316 27760316 G A EOMES Silent p.G409G 0.25 TCGA-AA-3984-01 3 27761750 27761750 G A EOMES Silent p.F316F 0.27 TCGA-AA-3984-01 3 3084019 3084019 C A CNTN4 Silent p.I808I 0.29 TCGA-AA-3984-01 3 30875346 30875346 G T GADL1 Missense_Mutation p.S350Y 0.12 deleterious(0.01) possibly_damaging(0.898) TCGA-AA-3984-01 3 3111788 3111788 C T IL5RA 3'UTR 0.35 TCGA-AA-3984-01 3 31725575 31725575 C T OSBPL10 Missense_Mutation p.R426Q 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 3179079 3179079 C T TRNT1 Missense_Mutation p.S95L 0.04 tolerated(0.15) benign(0.009) TCGA-AA-3984-01 3 32491019 32491019 A G CMTM7 Missense_Mutation p.N136S 0.10 tolerated(0.56) benign(0.032) TCGA-AA-3984-01 3 32995564 32995564 T C CCR4 Missense_Mutation p.I217T 0.11 deleterious(0.01) benign(0.014) TCGA-AA-3984-01 3 33114136 33114136 G A GLB1 Missense_Mutation p.R49C 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 3 33134682 33134682 C T TMPPE Missense_Mutation p.D336N 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 33195089 33195089 A G SUSD5 Silent p.G345G 0.33 TCGA-AA-3984-01 3 33255459 33255459 G A SUSD5 Missense_Mutation p.A84V 0.30 deleterious(0.01) possibly_damaging(0.821) TCGA-AA-3984-01 3 33438584 33438584 A C UBP1 Missense_Mutation p.I408M 0.09 deleterious(0.01) possibly_damaging(0.764) TCGA-AA-3984-01 3 35729372 35729372 A C ARPP21 Missense_Mutation p.K135Q 0.19 deleterious(0) probably_damaging(0.96) TCGA-AA-3984-01 3 35763216 35763216 G A ARPP21 Missense_Mutation p.R338H 0.20 deleterious(0.03) possibly_damaging(0.895) TCGA-AA-3984-01 3 36869682 36869682 C A TRANK1 3'UTR 0.41 TCGA-AA-3984-01 3 36869800 36869800 C T TRANK1 Missense_Mutation p.R2915H 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.794) TCGA-AA-3984-01 3 36876370 36876370 C T TRANK1 Missense_Mutation p.R1805Q 0.35 deleterious(0.01) possibly_damaging(0.895) TCGA-AA-3984-01 3 36893263 36893263 T G TRANK1 Missense_Mutation p.K1568Q 0.25 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 3 36896916 36896916 C T TRANK1 Missense_Mutation p.E1389K 0.13 deleterious(0) probably_damaging(0.936) TCGA-AA-3984-01 3 37379195 37379195 G A GOLGA4 Silent p.S2137S 0.22 TCGA-AA-3984-01 3 37818977 37818977 C T ITGA9 Missense_Mutation p.A879V 0.25 tolerated(0.37) probably_damaging(0.934) TCGA-AA-3984-01 3 37860457 37860457 G A ITGA9 Missense_Mutation p.D1029N 0.27 tolerated(0.27) benign(0.022) TCGA-AA-3984-01 3 37988694 37988694 C T CTDSPL Missense_Mutation p.L76F 0.26 tolerated(0.16) benign(0.002) TCGA-AA-3984-01 3 38291479 38291479 G T OXSR1 Missense_Mutation p.D449Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 3 38347682 38347682 C T SLC22A14 Silent p.L55L 0.17 TCGA-AA-3984-01 3 383703 383703 C T CHL1 Missense_Mutation p.A206V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 3 38595795 38595795 G A SCN5A Silent p.F1596F 0.41 TCGA-AA-3984-01 3 38739124 38739124 G A SCN10A Missense_Mutation p.R1863W 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 38743472 38743472 C T SCN10A Silent p.T1505T 0.32 TCGA-AA-3984-01 3 38770173 38770173 C T SCN10A Missense_Mutation p.D834N 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-AA-3984-01 3 38802757 38802757 C T SCN10A Missense_Mutation p.G270D 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 3 3888650 3888650 A G LRRN1 3'UTR 0.10 TCGA-AA-3984-01 3 38889083 38889083 G A SCN11A Missense_Mutation p.S1493L 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 3 38936403 38936403 C T SCN11A Missense_Mutation p.R819K 0.11 tolerated(0.13) benign(0.01) TCGA-AA-3984-01 3 39166826 39166826 C T TTC21A Silent p.L407L 0.28 TCGA-AA-3984-01 3 39180077 39180077 A G TTC21A Missense_Mutation p.D1283G 0.27 tolerated(0.73) benign(0.02) TCGA-AA-3984-01 3 39307973 39307973 C A CX3CR1 Nonsense_Mutation p.E42* 0.27 TCGA-AA-3984-01 3 39453541 39453541 A G RPSA Missense_Mutation p.Q261R 0.28 deleterious(0.03) benign(0.024) TCGA-AA-3984-01 3 40299670 40299670 C T MYRIP 3'UTR 0.22 TCGA-AA-3984-01 3 40528756 40528756 A C ZNF619 Missense_Mutation p.K292T 0.29 deleterious(0.05) probably_damaging(0.998) TCGA-AA-3984-01 3 40574455 40574455 T G ZNF621 Missense_Mutation p.F398L 0.30 tolerated(1) benign(0) TCGA-AA-3984-01 3 41973477 41973477 T G ULK4 Missense_Mutation p.T134P 0.33 deleterious(0.01) probably_damaging(0.974) TCGA-AA-3984-01 3 42264461 42264461 T C TRAK1 Silent p.C698C 0.27 TCGA-AA-3984-01 3 42576578 42576578 C T VIPR1 Silent p.L374L 0.34 TCGA-AA-3984-01 3 42915989 42915989 G A CYP8B1 Silent p.C440C 0.11 TCGA-AA-3984-01 3 431034 431034 A C CHL1 Missense_Mutation p.N783H 0.27 deleterious(0.01) possibly_damaging(0.789) TCGA-AA-3984-01 3 433473 433473 T C CHL1 Silent p.Y969Y 0.24 TCGA-AA-3984-01 3 44285167 44285167 C A TOPAZ1 Missense_Mutation p.S390Y 0.27 tolerated(0.06) possibly_damaging(0.61) TCGA-AA-3984-01 3 44399745 44399745 T G TCAIM Intron 0.50 TCGA-AA-3984-01 3 44489119 44489119 G T ZNF445 Missense_Mutation p.L682M 0.34 tolerated(0.1) unknown(0) TCGA-AA-3984-01 3 44540893 44540893 C A ZNF852 Missense_Mutation p.R459I 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 3 44542083 44542083 T G ZNF852 Missense_Mutation p.E62D 0.19 tolerated(0.44) benign(0.004) TCGA-AA-3984-01 3 44611962 44611962 C A ZKSCAN7 Missense_Mutation p.L454I 0.11 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 44612119 44612119 G A ZKSCAN7 Missense_Mutation p.R506Q 0.42 tolerated(0.67) benign(0.032) TCGA-AA-3984-01 3 44776003 44776003 C A ZNF501 Missense_Mutation p.F30L 0.17 deleterious_low_confidence(0.03) benign(0.004) TCGA-AA-3984-01 3 44816783 44816783 C T KIF15 Missense_Mutation p.R34C 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 45043051 45043051 T G EXOSC7 Missense_Mutation p.L148V 0.09 deleterious(0.01) benign(0.056) TCGA-AA-3984-01 3 45077421 45077421 C T CLEC3B 3'UTR 0.33 TCGA-AA-3984-01 3 45436142 45436142 G A LARS2 Missense_Mutation p.R66Q 0.27 tolerated(0.27) benign(0.104) TCGA-AA-3984-01 3 45817323 45817323 G A SLC6A20 Missense_Mutation p.A171V 0.27 tolerated(0.98) probably_damaging(0.937) TCGA-AA-3984-01 3 45943993 45943993 G A CCR9 3'UTR 0.31 TCGA-AA-3984-01 3 46244759 46244759 T C CCR1 Missense_Mutation p.H349R 0.22 tolerated(0.08) benign(0.295) TCGA-AA-3984-01 3 46477516 46477516 A C LTF 3'UTR 0.30 TCGA-AA-3984-01 3 4687079 4687079 C T ITPR1 Silent p.S211S 0.09 TCGA-AA-3984-01 3 47061267 47061267 C T SETD2 Missense_Mutation p.E2472K 0.25 deleterious(0.01) possibly_damaging(0.876) TCGA-AA-3984-01 3 47155437 47155437 C T SETD2 Silent p.Q1548Q 0.34 TCGA-AA-3984-01 3 47164097 47164097 G A SETD2 Missense_Mutation p.P677S 0.14 deleterious_low_confidence(0.02) benign(0.13) TCGA-AA-3984-01 3 47278068 47278068 C A KIF9 Nonsense_Mutation p.E656* 0.30 TCGA-AA-3984-01 3 47282433 47282433 T C KIF9 Silent p.R594R 0.24 TCGA-AA-3984-01 3 47308716 47308716 T C KIF9 Missense_Mutation p.N210S 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 3 47467022 47467022 A C SCAP Silent p.S330S 0.26 TCGA-AA-3984-01 3 47755916 47755916 T G SMARCC1 Missense_Mutation p.K261Q 0.31 tolerated(0.06) benign(0.317) TCGA-AA-3984-01 3 48348475 48348475 C T SPINK8 3'UTR 0.19 TCGA-AA-3984-01 3 48423200 48423200 C T FBXW12 Silent p.I332I 0.21 TCGA-AA-3984-01 3 48436111 48436111 C A FBXW12 Missense_Mutation p.S461Y 0.10 deleterious(0) probably_damaging(0.948) TCGA-AA-3984-01 3 48436175 48436175 G T FBXW12 3'UTR 0.41 TCGA-AA-3984-01 3 48587594 48587594 C A PFKFB4 Missense_Mutation p.K57N 0.21 possibly_damaging(0.802) TCGA-AA-3984-01 3 48627069 48627069 G A COL7A1 Silent p.G711G 0.31 TCGA-AA-3984-01 3 48696998 48696998 G A CELSR3 Missense_Mutation p.R1024W 0.25 deleterious(0.03) benign(0.104) TCGA-AA-3984-01 3 49053080 49053080 G A DALRD3 Missense_Mutation p.R525C 0.29 deleterious(0.01) benign(0.095) TCGA-AA-3984-01 3 49133499 49133499 C T QARS Missense_Mutation p.R764Q 0.22 deleterious(0.04) probably_damaging(0.909) TCGA-AA-3984-01 3 49154016 49154016 G A USP19 Missense_Mutation p.A384V 0.37 tolerated(0.19) benign(0.134) TCGA-AA-3984-01 3 49167713 49167713 G T LAMB2 Missense_Mutation p.F392L 0.09 deleterious(0) probably_damaging(0.959) TCGA-AA-3984-01 3 49316323 49316323 G A USP4 Missense_Mutation p.A886V 0.12 deleterious(0) benign(0.284) TCGA-AA-3984-01 3 49365211 49365211 C A USP4 Nonsense_Mutation p.E90* 0.10 TCGA-AA-3984-01 3 49548193 49548193 C T DAG1 Missense_Mutation p.R76C 0.20 deleterious(0.04) possibly_damaging(0.634) TCGA-AA-3984-01 3 49692081 49692081 C A BSN Missense_Mutation p.L1698I 0.43 unknown(0) TCGA-AA-3984-01 3 49713189 49713189 C T APEH Missense_Mutation p.T112M 0.32 tolerated(0.09) benign(0.173) TCGA-AA-3984-01 3 49832429 49832429 C T CDHR4 Missense_Mutation p.R379H 0.11 tolerated(1) benign(0) TCGA-AA-3984-01 3 49898877 49898877 G T CAMKV Missense_Mutation p.L146I 0.09 deleterious(0.04) possibly_damaging(0.881) TCGA-AA-3984-01 3 50112664 50112664 C T RBM6 Silent p.I1049I 0.12 TCGA-AA-3984-01 3 50251915 50251915 C T SLC38A3 Intron 0.27 TCGA-AA-3984-01 3 50255711 50255711 G T SLC38A3 RNA 0.07 TCGA-AA-3984-01 3 50415739 50415739 G A CACNA2D2 Silent p.I455I 0.29 TCGA-AA-3984-01 3 51312599 51312599 C T DOCK3 Missense_Mutation p.L880F 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 3 51370620 51370620 C T DOCK3 Missense_Mutation p.R1183C 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 3 51413217 51413217 C T DOCK3 Silent p.V1817V 0.34 TCGA-AA-3984-01 3 51450470 51450470 C T VPRBP Missense_Mutation p.D934N 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3984-01 3 51451487 51451487 C T VPRBP Missense_Mutation p.R854Q 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 51457270 51457270 A G VPRBP Missense_Mutation p.S623P 0.06 tolerated(0.09) possibly_damaging(0.474) TCGA-AA-3984-01 3 51457286 51457286 C T VPRBP Silent p.A617A 0.10 TCGA-AA-3984-01 3 51664927 51664927 C T RAD54L2 Missense_Mutation p.R269W 0.26 deleterious(0) possibly_damaging(0.836) TCGA-AA-3984-01 3 51743440 51743440 C A GRM2 Silent p.V147V 0.26 TCGA-AA-3984-01 3 51812657 51812657 G A IQCF6 Silent p.I102I 0.29 TCGA-AA-3984-01 3 52005669 52005669 C T ABHD14A 5'Flank 0.27 TCGA-AA-3984-01 3 52257323 52257323 G A TLR9 Missense_Mutation p.R491C 0.17 deleterious(0.02) benign(0.073) TCGA-AA-3984-01 3 52283548 52283548 A C PPM1M Intron 0.30 TCGA-AA-3984-01 3 52383341 52383341 G A DNAH1 Missense_Mutation p.D811N 0.28 benign(0.001) TCGA-AA-3984-01 3 52407030 52407030 T C DNAH1 Missense_Mutation p.W2316R 0.36 probably_damaging(0.994) TCGA-AA-3984-01 3 52476594 52476594 C T SEMA3G Missense_Mutation p.R107Q 0.10 tolerated(0.5) benign(0.015) TCGA-AA-3984-01 3 52539775 52539775 G A STAB1 Missense_Mutation p.R558H 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-AA-3984-01 3 52550064 52550064 G A STAB1 Silent p.P1318P 0.12 TCGA-AA-3984-01 3 52554133 52554133 C T STAB1 Silent p.V1803V 0.15 TCGA-AA-3984-01 3 52678727 52678727 G A PBRM1 Nonsense_Mutation p.R298* 0.30 TCGA-AA-3984-01 3 52713740 52713740 C A PBRM1 Splice_Site 0.16 TCGA-AA-3984-01 3 52720829 52720829 A C GNL3 Missense_Mutation p.K20Q 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 52728998 52728998 G A GLT8D1 Missense_Mutation p.L327F 0.28 deleterious(0) probably_damaging(0.974) TCGA-AA-3984-01 3 52867385 52867385 G T TMEM110-MUSTN1 Silent p.V358V 0.26 TCGA-AA-3984-01 3 53217202 53217202 G A PRKCD Missense_Mutation p.A213T 0.27 tolerated(0.6) benign(0.007) TCGA-AA-3984-01 3 53785874 53785874 G A CACNA1D Silent p.S1225S 0.21 TCGA-AA-3984-01 3 55504335 55504335 C T WNT5A Missense_Mutation p.V310M 0.22 tolerated(0.13) benign(0.017) TCGA-AA-3984-01 3 55733440 55733440 G A ERC2 Missense_Mutation p.S938L 0.21 tolerated(0.08) benign(0.006) TCGA-AA-3984-01 3 55984497 55984497 G A ERC2 Missense_Mutation p.R787C 0.10 deleterious(0) probably_damaging(0.973) TCGA-AA-3984-01 3 56026188 56026188 C T ERC2 Missense_Mutation p.E718K 0.35 deleterious(0.04) benign(0.358) TCGA-AA-3984-01 3 56658510 56658510 A G FAM208A Missense_Mutation p.S1494P 0.28 tolerated_low_confidence(0.07) benign(0.363) TCGA-AA-3984-01 3 56662639 56662639 A G FAM208A Missense_Mutation p.Y1251H 0.32 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 57139957 57139957 G A IL17RD Silent p.F225F 0.11 TCGA-AA-3984-01 3 57140171 57140171 A C IL17RD Missense_Mutation p.L188V 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-AA-3984-01 3 57232184 57232184 C T HESX1 3'UTR 0.10 TCGA-AA-3984-01 3 57335928 57335928 T G DNAH12 Missense_Mutation p.E462D 0.26 tolerated(0.06) benign(0.038) TCGA-AA-3984-01 3 57368503 57368503 C A DNAH12 Missense_Mutation p.R88I 0.13 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 57454591 57454591 C A snoU13 3'Flank 0.29 TCGA-AA-3984-01 3 57454636 57454636 C A snoU13 3'Flank 0.33 TCGA-AA-3984-01 3 57469233 57469233 C T DNAH12 Missense_Mutation p.C507Y 0.26 deleterious(0.03) benign(0.384) TCGA-AA-3984-01 3 57563080 57563080 T G ARF4 Missense_Mutation p.E98A 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.688) TCGA-AA-3984-01 3 58183551 58183551 T A DNASE1L3 Missense_Mutation p.D234V 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 58413882 58413882 G A PDHB Missense_Mutation p.A320V 0.32 deleterious(0) possibly_damaging(0.755) TCGA-AA-3984-01 3 58552356 58552356 G A FAM107A Missense_Mutation p.R132W 0.23 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 3 58849468 58849468 G A C3orf67 Missense_Mutation p.S345F 0.27 tolerated(0.06) benign(0.381) TCGA-AA-3984-01 3 62216935 62216935 A C PTPRG Missense_Mutation p.R775S 0.26 tolerated(0.46) benign(0.023) TCGA-AA-3984-01 3 62262714 62262714 T G PTPRG Silent p.S1209S 0.08 TCGA-AA-3984-01 3 63264156 63264156 G A SYNPR 5'UTR 0.11 TCGA-AA-3984-01 3 63981687 63981687 C T ATXN7 Missense_Mutation p.S730F 0.26 tolerated(0.07) probably_damaging(1) TCGA-AA-3984-01 3 63983298 63983298 A G ATXN7 Missense_Mutation p.D888G 0.31 tolerated_low_confidence(0.16) benign(0.098) TCGA-AA-3984-01 3 64084955 64084955 G A PRICKLE2 Silent p.F769F 0.20 TCGA-AA-3984-01 3 64666902 64666902 T C ADAMTS9 Silent p.T218T 0.22 TCGA-AA-3984-01 3 66421708 66421708 C T SLC25A26 Intron 0.30 TCGA-AA-3984-01 3 67058648 67058648 G A KBTBD8 Missense_Mutation p.V549I 0.20 tolerated(0.21) benign(0.001) TCGA-AA-3984-01 3 68466481 68466481 G A FAM19A1 Missense_Mutation p.R57H 0.26 deleterious(0.05) benign(0.033) TCGA-AA-3984-01 3 69126992 69126992 C T UBA3 Missense_Mutation p.R47Q 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3984-01 3 69167961 69167961 G T LMOD3 Silent p.I515I 0.28 TCGA-AA-3984-01 3 70008509 70008509 G T MITF Nonsense_Mutation p.E367* 0.10 TCGA-AA-3984-01 3 73111046 73111046 T C EBLN2 5'UTR 0.22 TCGA-AA-3984-01 3 73111132 73111132 A C EBLN2 5'UTR 0.38 TCGA-AA-3984-01 3 7340431 7340431 A C GRM7 Missense_Mutation p.D266A 0.24 tolerated(0.13) benign(0.038) TCGA-AA-3984-01 3 75786776 75786776 C T ZNF717 Silent p.Q666Q 0.21 TCGA-AA-3984-01 3 77147467 77147467 C T ROBO2 Nonsense_Mutation p.R138* 0.25 TCGA-AA-3984-01 3 77612339 77612339 A C ROBO2 Missense_Mutation p.K530T 0.42 tolerated(0.26) benign(0.442) TCGA-AA-3984-01 3 77623762 77623762 G A ROBO2 Missense_Mutation p.R711Q 0.29 tolerated(0.35) possibly_damaging(0.602) TCGA-AA-3984-01 3 77645885 77645885 A C ROBO2 Silent p.G962G 0.30 TCGA-AA-3984-01 3 8787497 8787497 G A CAV3 Missense_Mutation p.A134T 0.32 deleterious(0.05) benign(0.09) TCGA-AA-3984-01 3 88040322 88040322 C T HTR1F Silent p.G141G 0.26 TCGA-AA-3984-01 3 88042505 88042505 T A HTR1F 3'UTR 0.41 TCGA-AA-3984-01 3 88104967 88104967 G A CGGBP1 Missense_Mutation p.R54C 0.07 tolerated(0.16) benign(0.016) TCGA-AA-3984-01 3 88188535 88188535 T G ZNF654 Missense_Mutation p.F25L 0.07 tolerated(0.13) probably_damaging(0.998) TCGA-AA-3984-01 3 89259104 89259104 G A EPHA3 Missense_Mutation p.R83K 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-AA-3984-01 3 89390975 89390975 G C EPHA3 Missense_Mutation p.W347C 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 3 8977606 8977606 C A RAD18 Nonsense_Mutation p.E280* 0.24 TCGA-AA-3984-01 3 93629541 93629541 G A PROS1 Missense_Mutation p.R90C 0.09 deleterious(0.01) possibly_damaging(0.513) TCGA-AA-3984-01 3 95374342 95374342 T A MTHFD2P1 RNA 0.38 TCGA-AA-3984-01 3 96706200 96706200 A G EPHA6 Silent p.E159E 0.29 TCGA-AA-3984-01 3 97194219 97194219 G T EPHA6 Nonsense_Mutation p.G640* 0.23 TCGA-AA-3984-01 3 97852225 97852225 G T OR5H1 Missense_Mutation p.K228N 0.28 tolerated(0.08) benign(0.018) TCGA-AA-3984-01 3 97887717 97887717 A C OR5H15 Silent p.P58P 0.10 TCGA-AA-3984-01 3 97983880 97983880 G A OR5H6 Missense_Mutation p.R251Q 0.16 tolerated(0.22) benign(0.06) TCGA-AA-3984-01 3 98073321 98073321 C A OR5K4 Silent p.I208I 0.11 TCGA-AA-3984-01 3 98110153 98110153 C T OR5K3 Missense_Mutation p.S215F 0.29 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 3 9833114 9833114 C T TADA3 Missense_Mutation p.D13N 0.24 deleterious(0) probably_damaging(0.967) TCGA-AA-3984-01 3 99569486 99569486 C T FILIP1L Missense_Mutation p.R345Q 0.09 tolerated(0.92) benign(0.048) TCGA-AA-3984-01 3 99648748 99648748 C T FILIP1L Silent p.A126A 0.39 TCGA-AA-3984-01 3 99649779 99649779 T A FILIP1L Missense_Mutation p.K29I 0.32 tolerated(0.15) benign(0.001) TCGA-AA-3984-01 4 100129871 100129871 G A ADH6 Missense_Mutation p.A261V 0.19 tolerated(0.07) benign(0.02) TCGA-AA-3984-01 4 100205875 100205875 G A ADH1A Silent p.N115N 0.06 TCGA-AA-3984-01 4 100268197 100268197 T G ADH1C Missense_Mutation p.E75D 0.13 benign(0.369) TCGA-AA-3984-01 4 100463288 100463288 C A C4orf17 3'UTR 0.24 TCGA-AA-3984-01 4 100504759 100504759 A C MTTP Intron 0.16 TCGA-AA-3984-01 4 100527922 100527922 G T MTTP Missense_Mutation p.K454N 0.10 tolerated(0.07) possibly_damaging(0.694) TCGA-AA-3984-01 4 100543835 100543835 C T MTTP Nonsense_Mutation p.Q839* 0.10 TCGA-AA-3984-01 4 100784981 100784981 G A DAPP1 Missense_Mutation p.D219N 0.15 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 4 10079443 10079443 G A WDR1 Silent p.G501G 0.23 TCGA-AA-3984-01 4 101331444 101331444 T G EMCN 3'UTR 0.27 TCGA-AA-3984-01 4 102117114 102117114 C T PPP3CA Missense_Mutation p.R73Q 0.29 deleterious(0.02) possibly_damaging(0.525) TCGA-AA-3984-01 4 102839227 102839227 C T BANK1 Missense_Mutation p.L363F 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 4 102992455 102992455 C T BANK1 Missense_Mutation p.P746S 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3984-01 4 103611846 103611846 G A MANBA Silent p.I252I 0.32 TCGA-AA-3984-01 4 103718451 103718451 A G UBE2D3 3'Flank 0.31 TCGA-AA-3984-01 4 103970157 103970157 G A SLC9B2 Silent p.G202G 0.30 TCGA-AA-3984-01 4 104072448 104072448 G A CENPE Silent p.A1108A 0.28 TCGA-AA-3984-01 4 104512768 104512768 G T TACR3 Missense_Mutation p.L321I 0.20 tolerated(0.1) benign(0.027) TCGA-AA-3984-01 4 106157490 106157490 C T TET2 Silent p.F797F 0.10 TCGA-AA-3984-01 4 1066569 1066569 A C RNF212 3'UTR 0.44 TCGA-AA-3984-01 4 106744129 106744129 G A GSTCD Missense_Mutation p.R420Q 0.29 deleterious(0.01) benign(0.28) TCGA-AA-3984-01 4 106888415 106888415 C T NPNT Silent p.L502L 0.12 TCGA-AA-3984-01 4 1073468 1073468 G A RNF212 Missense_Mutation p.S158L 0.09 tolerated(0.14) benign(0.074) TCGA-AA-3984-01 4 108574727 108574727 C T PAPSS1 Missense_Mutation p.R386Q 0.27 deleterious(0.02) benign(0.021) TCGA-AA-3984-01 4 109000705 109000705 A G LEF1 Missense_Mutation p.I263T 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 4 109670395 109670395 G A ETNPPL Missense_Mutation p.T309M 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 4 109675802 109675802 C A ETNPPL Missense_Mutation p.D159Y 0.30 deleterious(0) possibly_damaging(0.81) TCGA-AA-3984-01 4 110223157 110223157 C T COL25A1 Missense_Mutation p.A7T 0.33 tolerated_low_confidence(0.21) unknown(0) TCGA-AA-3984-01 4 110433236 110433236 G A SEC24B Missense_Mutation p.D634N 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 4 110639897 110639897 C T PLA2G12A Missense_Mutation p.R76H 0.08 deleterious(0.01) benign(0.081) TCGA-AA-3984-01 4 110772682 110772682 G A LRIT3 Missense_Mutation p.D47N 0.29 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 4 110915966 110915966 T C EGF Missense_Mutation p.S979P 0.21 deleterious(0.03) benign(0.151) TCGA-AA-3984-01 4 113199049 113199049 G T TIFA Missense_Mutation p.S175Y 0.20 tolerated(1) benign(0.002) TCGA-AA-3984-01 4 113502849 113502849 G A C4orf21 Missense_Mutation p.R1470W 0.29 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 4 113540617 113540617 G A C4orf21 Missense_Mutation p.S194L 0.22 tolerated(0.47) possibly_damaging(0.719) TCGA-AA-3984-01 4 113574263 113574263 T C LARP7 Missense_Mutation p.Y490H 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 11400898 11400898 C T HS3ST1 Silent p.S244S 0.38 TCGA-AA-3984-01 4 114277217 114277217 A G ANK2 Silent p.G2481G 0.09 TCGA-AA-3984-01 4 114278641 114278641 C T ANK2 Missense_Mutation p.S2956F 0.22 possibly_damaging(0.665) TCGA-AA-3984-01 4 114278656 114278656 C A ANK2 Missense_Mutation p.S2961Y 0.22 benign(0.015) TCGA-AA-3984-01 4 115544340 115544340 G A UGT8 Missense_Mutation p.E102K 0.20 tolerated(0.12) probably_damaging(0.944) TCGA-AA-3984-01 4 115597432 115597432 G T UGT8 Missense_Mutation p.K538N 0.14 deleterious_low_confidence(0) possibly_damaging(0.722) TCGA-AA-3984-01 4 115597464 115597464 G T UGT8 3'UTR 0.17 TCGA-AA-3984-01 4 118976028 118976028 G T NDST3 Missense_Mutation p.M321I 0.16 tolerated(0.07) probably_damaging(0.977) TCGA-AA-3984-01 4 119234410 119234410 C T PRSS12 Missense_Mutation p.E479K 0.25 deleterious(0.04) possibly_damaging(0.867) TCGA-AA-3984-01 4 119631372 119631372 G T METTL14 Missense_Mutation p.R429I 0.19 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 4 119678885 119678885 T G SEC24D Missense_Mutation p.K471T 0.10 tolerated(0.41) benign(0.012) TCGA-AA-3984-01 4 119944588 119944588 C T SYNPO2 Nonsense_Mutation p.R37* 0.28 TCGA-AA-3984-01 4 119951019 119951019 C T SYNPO2 Silent p.S363S 0.30 TCGA-AA-3984-01 4 119952404 119952404 C T SYNPO2 Missense_Mutation p.A825V 0.32 tolerated(0.12) benign(0.201) TCGA-AA-3984-01 4 119979122 119979123 - T SYNPO2 3'UTR 0.10 TCGA-AA-3984-01 4 120107311 120107311 G A MYOZ2 Missense_Mutation p.E251K 0.26 tolerated(0.86) unknown(0) TCGA-AA-3984-01 4 120212331 120212331 G T USP53 Nonsense_Mutation p.E755* 0.26 TCGA-AA-3984-01 4 120213811 120213811 T C USP53 Silent p.C889C 0.30 TCGA-AA-3984-01 4 120446754 120446754 G A PDE5A Missense_Mutation p.R577W 0.15 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 4 120527935 120527935 C A PDE5A Nonsense_Mutation p.E224* 0.24 TCGA-AA-3984-01 4 120981337 120981337 G T MAD2L1 Nonsense_Mutation p.S185* 0.22 TCGA-AA-3984-01 4 121616207 121616207 A C PRDM5 3'UTR 0.35 TCGA-AA-3984-01 4 121719546 121719546 T G PRDM5 Missense_Mutation p.K355T 0.10 deleterious(0) possibly_damaging(0.672) TCGA-AA-3984-01 4 121957538 121957538 C T NDNF Missense_Mutation p.E530K 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3984-01 4 122254055 122254055 C A QRFPR Nonsense_Mutation p.E240* 0.21 TCGA-AA-3984-01 4 122724127 122724127 G A EXOSC9 Silent p.S113S 0.10 TCGA-AA-3984-01 4 122825643 122825643 C A TRPC3 Missense_Mutation p.W696L 0.06 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 4 123202754 123202754 T G KIAA1109 Silent p.V2954V 0.09 TCGA-AA-3984-01 4 123978371 123978371 G A SPATA5 Missense_Mutation p.R714Q 0.28 deleterious(0.01) probably_damaging(0.972) TCGA-AA-3984-01 4 123978405 123978405 C A SPATA5 Missense_Mutation p.F725L 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 4 1246198 1246198 G A CTBP1 5'Flank 0.12 TCGA-AA-3984-01 4 126237931 126237931 G A FAT4 Missense_Mutation p.R122Q 0.24 probably_damaging(0.998) TCGA-AA-3984-01 4 126240523 126240523 T C FAT4 Missense_Mutation p.V986A 0.29 possibly_damaging(0.859) TCGA-AA-3984-01 4 126242082 126242082 G T FAT4 Nonsense_Mutation p.E1506* 0.25 TCGA-AA-3984-01 4 126242127 126242127 G A FAT4 Missense_Mutation p.D1521N 0.27 probably_damaging(0.971) TCGA-AA-3984-01 4 126371536 126371536 G A FAT4 Missense_Mutation p.G3122D 0.22 probably_damaging(1) TCGA-AA-3984-01 4 126372821 126372821 C T FAT4 Silent p.S3550S 0.36 TCGA-AA-3984-01 4 126411435 126411435 G A FAT4 Silent p.G4486G 0.09 TCGA-AA-3984-01 4 126411471 126411471 C T FAT4 Silent p.I4498I 0.25 TCGA-AA-3984-01 4 126411829 126411829 G T FAT4 Nonsense_Mutation p.E4618* 0.21 TCGA-AA-3984-01 4 128584612 128584612 A G INTU Missense_Mutation p.N282S 0.11 tolerated(1) benign(0.002) TCGA-AA-3984-01 4 128694649 128694649 C T SLC25A31 Missense_Mutation p.R290C 0.10 deleterious(0.03) benign(0.057) TCGA-AA-3984-01 4 128814700 128814700 A C PLK4 Silent p.I785I 0.29 TCGA-AA-3984-01 4 129764115 129764115 A G JADE1 Silent p.S20S 0.29 TCGA-AA-3984-01 4 13338185 13338185 T G HSP90AB2P RNA 0.24 TCGA-AA-3984-01 4 134071835 134071835 C T PCDH10 Silent p.F180F 0.22 TCGA-AA-3984-01 4 135121003 135121003 G T PABPC4L 3'UTR 0.36 TCGA-AA-3984-01 4 135121262 135121262 C T PABPC4L Missense_Mutation p.D363N 0.22 tolerated(0.06) probably_damaging(0.998) TCGA-AA-3984-01 4 13608789 13608789 C A BOD1L1 Missense_Mutation p.K589N 0.10 probably_damaging(0.999) TCGA-AA-3984-01 4 13610232 13610232 C A BOD1L1 Missense_Mutation p.R555I 0.33 probably_damaging(0.998) TCGA-AA-3984-01 4 138452136 138452136 A C PCDH18 Missense_Mutation p.I369M 0.15 deleterious(0) possibly_damaging(0.87) TCGA-AA-3984-01 4 140188116 140188116 T C MGARP Silent p.V120V 0.28 TCGA-AA-3984-01 4 140263980 140263980 G T NAA15 Nonsense_Mutation p.E135* 0.24 TCGA-AA-3984-01 4 141555255 141555255 G A TBC1D9 Missense_Mutation p.R865C 0.26 deleterious(0.01) benign(0.015) TCGA-AA-3984-01 4 141580759 141580759 T C TBC1D9 Missense_Mutation p.Y635C 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 4 141888828 141888828 G T RNF150 Silent p.V228V 0.32 TCGA-AA-3984-01 4 141888889 141888889 G A RNF150 Missense_Mutation p.S208L 0.23 deleterious(0) possibly_damaging(0.889) TCGA-AA-3984-01 4 142053545 142053545 C T RNF150 Missense_Mutation p.A140T 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 4 143029297 143029297 C T INPP4B Missense_Mutation p.E775K 0.20 tolerated(0.18) possibly_damaging(0.793) TCGA-AA-3984-01 4 143114280 143114280 G A INPP4B Missense_Mutation p.L381F 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3984-01 4 144359241 144359241 G A GAB1 Missense_Mutation p.S228N 0.26 tolerated(0.41) benign(0.007) TCGA-AA-3984-01 4 144442706 144442706 G A SMARCA5 Missense_Mutation p.R126Q 0.10 tolerated(0.11) benign(0.071) TCGA-AA-3984-01 4 144465117 144465117 A C SMARCA5 Missense_Mutation p.K722Q 0.28 deleterious(0.04) benign(0.212) TCGA-AA-3984-01 4 145655909 145655909 G A HHIP Missense_Mutation p.E593K 0.12 tolerated(1) probably_damaging(0.982) TCGA-AA-3984-01 4 145655970 145655970 G A HHIP Missense_Mutation p.R613Q 0.10 deleterious(0.01) benign(0.008) TCGA-AA-3984-01 4 146059580 146059580 G T OTUD4 Missense_Mutation p.P718T 0.10 tolerated(0.23) benign(0.011) TCGA-AA-3984-01 4 146073766 146073766 T G OTUD4 Missense_Mutation p.K234Q 0.30 deleterious(0) benign(0.299) TCGA-AA-3984-01 4 146770473 146770473 C T ZNF827 Splice_Site p.X741_splice 0.42 TCGA-AA-3984-01 4 147724725 147724725 G A TTC29 Missense_Mutation p.A405V 0.06 deleterious(0.03) benign(0.234) TCGA-AA-3984-01 4 148796176 148796176 G A ARHGAP10 Missense_Mutation p.R236Q 0.29 deleterious(0) probably_damaging(0.975) TCGA-AA-3984-01 4 149357071 149357071 C T NR3C2 Silent p.S314S 0.15 TCGA-AA-3984-01 4 151160922 151160922 C A DCLK2 Missense_Mutation p.S549Y 0.11 tolerated(0.09) possibly_damaging(0.561) TCGA-AA-3984-01 4 152203338 152203338 C T PRSS48 Missense_Mutation p.S85L 0.30 tolerated(0.06) benign(0.196) TCGA-AA-3984-01 4 152609907 152609907 G A PET112 Silent p.V402V 0.26 TCGA-AA-3984-01 4 153247244 153247244 C A FBXW7 Missense_Mutation p.D520Y 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 153332456 153332456 T G FBXW7 Missense_Mutation p.K167T 0.27 tolerated_low_confidence(0.08) benign(0.009) TCGA-AA-3984-01 4 153332915 153332915 C T FBXW7 Missense_Mutation p.R14Q 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-AA-3984-01 4 153691680 153691680 C T TIGD4 Silent p.S159S 0.26 TCGA-AA-3984-01 4 153897525 153897525 G A FHDC1 Missense_Mutation p.E1028K 0.34 tolerated(0.92) benign(0.032) TCGA-AA-3984-01 4 154197054 154197054 G T TRIM2 Missense_Mutation p.Q75H 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-AA-3984-01 4 154216861 154216861 G A TRIM2 Missense_Mutation p.E395K 0.40 tolerated(0.23) benign(0.14) TCGA-AA-3984-01 4 154502634 154502634 G T KIAA0922 Nonsense_Mutation p.E272* 0.08 TCGA-AA-3984-01 4 154524959 154524959 A C KIAA0922 Missense_Mutation p.N932T 0.37 tolerated(0.08) benign(0.044) TCGA-AA-3984-01 4 155219658 155219658 A C DCHS2 Silent p.L1481L 0.26 TCGA-AA-3984-01 4 155410677 155410677 C T DCHS2 Missense_Mutation p.E611K 0.26 tolerated(0.68) benign(0.024) TCGA-AA-3984-01 4 155460345 155460345 G A PLRG1 Nonsense_Mutation p.R355* 0.10 TCGA-AA-3984-01 4 155719279 155719279 A C RBM46 Missense_Mutation p.E156D 0.21 tolerated(0.17) benign(0.269) TCGA-AA-3984-01 4 155719320 155719320 A T RBM46 Missense_Mutation p.D170V 0.17 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 4 15581669 15581669 C T CC2D2A Missense_Mutation p.R1284C 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 156281509 156281509 C T MAP9 Silent p.E287E 0.20 TCGA-AA-3984-01 4 156618249 156618249 G A GUCY1A3 Missense_Mutation p.S77N 0.32 deleterious(0.02) probably_damaging(0.955) TCGA-AA-3984-01 4 156698713 156698713 G T GUCY1B3 Missense_Mutation p.K72N 0.30 tolerated(0.17) benign(0.051) TCGA-AA-3984-01 4 156726271 156726271 G T GUCY1B3 Nonsense_Mutation p.E576* 0.08 TCGA-AA-3984-01 4 156757891 156757891 T G ASIC5 Missense_Mutation p.K395N 0.26 tolerated(0.4) benign(0.004) TCGA-AA-3984-01 4 158091801 158091801 G A GLRB Missense_Mutation p.R472Q 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-AA-3984-01 4 158224833 158224833 G C GRIA2 Missense_Mutation p.G120A 0.34 tolerated(0.81) benign(0.069) TCGA-AA-3984-01 4 158282173 158282173 A G GRIA2 Intron 0.10 TCGA-AA-3984-01 4 159048640 159048640 G A FAM198B Silent p.I501I 0.25 TCGA-AA-3984-01 4 159629810 159629810 T G ETFDH 3'UTR 0.27 TCGA-AA-3984-01 4 159640379 159640379 C A PPID Nonsense_Mutation p.E96* 0.12 TCGA-AA-3984-01 4 16008296 16008296 A C PROM1 Missense_Mutation p.V440G 0.17 deleterious(0.04) benign(0.25) TCGA-AA-3984-01 4 160262940 160262940 G A RAPGEF2 Missense_Mutation p.R759K 0.29 tolerated(0.86) benign(0.001) TCGA-AA-3984-01 4 164392919 164392919 T G TKTL2 3'UTR 0.21 TCGA-AA-3984-01 4 164393537 164393537 G A TKTL2 Silent p.F450F 0.36 TCGA-AA-3984-01 4 164394013 164394013 A G TKTL2 Missense_Mutation p.S292P 0.25 tolerated(1) benign(0) TCGA-AA-3984-01 4 165878837 165878837 C T FAM218A 3'UTR 0.09 TCGA-AA-3984-01 4 166231885 166231885 G T KLHL2 Missense_Mutation p.G411V 0.06 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 166261450 166261450 C T MSMO1 Silent p.I203I 0.22 TCGA-AA-3984-01 4 166300670 166300670 C T CPE Silent p.V99V 0.09 TCGA-AA-3984-01 4 166929130 166929130 G T TLL1 Nonsense_Mutation p.E283* 0.29 TCGA-AA-3984-01 4 166963197 166963197 A C TLL1 Missense_Mutation p.K427T 0.29 tolerated(0.08) benign(0.301) TCGA-AA-3984-01 4 169169425 169169425 T G DDX60 Missense_Mutation p.T1293P 0.14 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 4 169197322 169197322 C T DDX60 Silent p.T663T 0.15 TCGA-AA-3984-01 4 169317257 169317257 C A DDX60L Missense_Mutation p.K1170N 0.23 tolerated(0.18) benign(0.077) TCGA-AA-3984-01 4 169923103 169923103 C A CBR4 Intron 0.36 TCGA-AA-3984-01 4 170354754 170354754 A C NEK1 Missense_Mutation p.L943V 0.30 tolerated(0.25) benign(0.037) TCGA-AA-3984-01 4 170429410 170429410 G A NEK1 Missense_Mutation p.R608C 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 174216609 174216609 C T GALNT7 Nonsense_Mutation p.R273* 0.08 TCGA-AA-3984-01 4 174242776 174242776 C T GALNT7 Missense_Mutation p.R628C 0.22 tolerated(0.17) probably_damaging(0.978) TCGA-AA-3984-01 4 174254253 174254253 T G HMGB2 Missense_Mutation p.K88T 0.29 deleterious(0.01) possibly_damaging(0.807) TCGA-AA-3984-01 4 175184058 175184058 C T FBXO8 Silent p.S62S 0.10 TCGA-AA-3984-01 4 175565066 175565066 G A GLRA3 Silent p.I422I 0.32 TCGA-AA-3984-01 4 175898692 175898692 G T ADAM29 Missense_Mutation p.K672N 0.11 tolerated(0.29) benign(0.212) TCGA-AA-3984-01 4 177089878 177089878 A C WDR17 Missense_Mutation p.K1055Q 0.22 tolerated(0.12) probably_damaging(0.997) TCGA-AA-3984-01 4 177113911 177113911 C T SPATA4 Silent p.S185S 0.25 TCGA-AA-3984-01 4 177604979 177604979 G T VEGFC 3'UTR 0.21 TCGA-AA-3984-01 4 17826672 17826672 G T NCAPG Nonsense_Mutation p.E489* 0.19 TCGA-AA-3984-01 4 178274763 178274763 A C NEIL3 Silent p.V447V 0.26 TCGA-AA-3984-01 4 17841364 17841364 G A NCAPG Silent p.S844S 0.10 TCGA-AA-3984-01 4 17847356 17847356 G A NCAPG 3'Flank 0.12 TCGA-AA-3984-01 4 183959368 183959368 T G FAM92A1P2 RNA 0.15 TCGA-AA-3984-01 4 184431617 184431617 G A ING2 Missense_Mutation p.E119K 0.29 deleterious(0.01) possibly_damaging(0.596) TCGA-AA-3984-01 4 184607877 184607877 G T TRAPPC11 Missense_Mutation p.K623N 0.30 tolerated(0.11) possibly_damaging(0.728) TCGA-AA-3984-01 4 185646114 185646114 C A CENPU Missense_Mutation p.R106I 0.21 tolerated(0.09) benign(0.01) TCGA-AA-3984-01 4 186231801 186231801 C T SNX25 Missense_Mutation p.A228V 0.31 tolerated(0.11) possibly_damaging(0.884) TCGA-AA-3984-01 4 186379985 186379985 C A CCDC110 Nonsense_Mutation p.E586* 0.31 TCGA-AA-3984-01 4 186380209 186380210 - T CCDC110 Frame_Shift_Ins p.I511Nfs*3 0.16 TCGA-AA-3984-01 4 186533030 186533030 G A SORBS2 Silent p.V1096V 0.11 TCGA-AA-3984-01 4 186548027 186548027 G T SORBS2 Missense_Mutation p.S394Y 0.10 deleterious(0) possibly_damaging(0.807) TCGA-AA-3984-01 4 187077233 187077233 C T FAM149A Missense_Mutation p.R155C 0.25 tolerated(0.07) benign(0) TCGA-AA-3984-01 4 187177156 187177156 A G KLKB1 Silent p.K500K 0.30 TCGA-AA-3984-01 4 187177230 187177230 C T KLKB1 Missense_Mutation p.S525L 0.09 tolerated(0.07) benign(0.157) TCGA-AA-3984-01 4 187201424 187201424 G A F11 Missense_Mutation p.E305K 0.24 deleterious(0.02) possibly_damaging(0.745) TCGA-AA-3984-01 4 187208938 187208938 C A F11 Silent p.I559I 0.10 TCGA-AA-3984-01 4 187527368 187527368 C A FAT1 Splice_Site p.X3403_splice 0.11 TCGA-AA-3984-01 4 188924639 188924639 C T ZFP42 Silent p.F226F 0.15 TCGA-AA-3984-01 4 20258328 20258328 G A SLIT2 Silent p.T71T 0.21 TCGA-AA-3984-01 4 22389381 22389381 C T GPR125 Missense_Mutation p.D1305N 0.28 deleterious(0) benign(0.144) TCGA-AA-3984-01 4 24578207 24578207 C A DHX15 Nonsense_Mutation p.E56* 0.07 TCGA-AA-3984-01 4 25005473 25005473 T C LGI2 Missense_Mutation p.D413G 0.09 deleterious(0) possibly_damaging(0.545) TCGA-AA-3984-01 4 25676002 25676002 C A SLC34A2 Missense_Mutation p.S434Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 4 265417 265417 C A ZNF732 Missense_Mutation p.R410I 0.31 tolerated(0.59) possibly_damaging(0.638) TCGA-AA-3984-01 4 2659562 2659562 A C FAM193A Silent p.T157T 0.09 TCGA-AA-3984-01 4 2886256 2886256 A G ADD1 Missense_Mutation p.T125A 0.28 deleterious(0.05) possibly_damaging(0.594) TCGA-AA-3984-01 4 2934131 2934131 C T MFSD10 Missense_Mutation p.D214N 0.26 tolerated(0.13) benign(0.034) TCGA-AA-3984-01 4 30723968 30723968 C T PCDH7 Silent p.F308F 0.21 TCGA-AA-3984-01 4 3208605 3208605 G A HTT Silent p.T1990T 0.24 TCGA-AA-3984-01 4 3371840 3371840 C T RGS12 Intron 0.41 TCGA-AA-3984-01 4 3416494 3416494 G T RGS12 Nonsense_Mutation p.E736* 0.36 TCGA-AA-3984-01 4 3430239 3430239 C T RGS12 Intron 0.13 TCGA-AA-3984-01 4 3441279 3441279 G A RGS12 Silent p.A1404A 0.33 TCGA-AA-3984-01 4 3494986 3494986 A G DOK7 Missense_Mutation p.S425G 0.10 tolerated(0.66) benign(0) TCGA-AA-3984-01 4 3516638 3516638 G A LRPAP1 Silent p.F284F 0.33 TCGA-AA-3984-01 4 36168645 36168645 T G ARAP2 Missense_Mutation p.T628P 0.27 deleterious(0.02) possibly_damaging(0.876) TCGA-AA-3984-01 4 36214091 36214091 C T ARAP2 Missense_Mutation p.E354K 0.14 deleterious(0.03) benign(0.291) TCGA-AA-3984-01 4 366762 366762 C A ZNF141 Nonsense_Mutation p.S179* 0.07 TCGA-AA-3984-01 4 367154 367154 C T ZNF141 Missense_Mutation p.P310S 0.26 deleterious(0.03) benign(0.374) TCGA-AA-3984-01 4 37446008 37446008 T G KIAA1239 Missense_Mutation p.F800V 0.23 tolerated(0.57) benign(0.004) TCGA-AA-3984-01 4 37863134 37863134 T C PGM2 Silent p.D580D 0.31 TCGA-AA-3984-01 4 38799674 38799674 G T TLR1 Missense_Mutation p.S260Y 0.24 tolerated(1) benign(0.413) TCGA-AA-3984-01 4 38831126 38831126 C T TLR6 5'UTR 0.33 TCGA-AA-3984-01 4 38924481 38924481 G T FAM114A1 Nonsense_Mutation p.E346* 0.35 TCGA-AA-3984-01 4 39064633 39064633 G T KLHL5 Nonsense_Mutation p.E167* 0.34 TCGA-AA-3984-01 4 39083717 39083717 C T KLHL5 Missense_Mutation p.R326C 0.33 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 39269633 39269633 C T WDR19 Missense_Mutation p.R1094C 0.10 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 4 39291539 39291539 C A RFC1 Nonsense_Mutation p.E1098* 0.19 TCGA-AA-3984-01 4 39310615 39310615 T G RFC1 Missense_Mutation p.K509T 0.34 deleterious(0.02) benign(0.334) TCGA-AA-3984-01 4 39469209 39469209 C T LIAS Missense_Mutation p.A227V 0.19 tolerated(0.15) benign(0.015) TCGA-AA-3984-01 4 39515754 39515754 A C UGDH Missense_Mutation p.F71L 0.33 deleterious(0) probably_damaging(0.935) TCGA-AA-3984-01 4 39553679 39553679 A G SMIM14 3'UTR 0.27 TCGA-AA-3984-01 4 39863852 39863852 G A PDS5A Missense_Mutation p.R1025C 0.09 deleterious(0) possibly_damaging(0.888) TCGA-AA-3984-01 4 40044966 40044966 G T RP11-333E13.4 RNA 0.12 TCGA-AA-3984-01 4 40123770 40123770 A C N4BP2 Missense_Mutation p.S1347R 0.25 tolerated(0.08) benign(0.136) TCGA-AA-3984-01 4 40337967 40337967 C T CHRNA9 Missense_Mutation p.T63M 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 40356072 40356072 C T CHRNA9 Silent p.F325F 0.30 TCGA-AA-3984-01 4 41362883 41362883 A G LIMCH1 Missense_Mutation p.E9G 0.16 tolerated_low_confidence(0.18) unknown(0) TCGA-AA-3984-01 4 41614999 41614999 G A LIMCH1 Intron 0.08 TCGA-AA-3984-01 4 41648881 41648881 A C LIMCH1 Missense_Mutation p.N546H 0.33 tolerated(0.08) possibly_damaging(0.88) TCGA-AA-3984-01 4 41749496 41749496 C T PHOX2B Missense_Mutation p.R100H 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 4 41750486 41750486 T G PHOX2B Silent p.R48R 0.30 TCGA-AA-3984-01 4 41750610 41750610 A C PHOX2B Nonsense_Mutation p.Y6* 0.11 TCGA-AA-3984-01 4 41946922 41946922 C T TMEM33 Missense_Mutation p.A170V 0.22 tolerated(0.68) possibly_damaging(0.726) TCGA-AA-3984-01 4 41985108 41985108 G A DCAF4L1 3'UTR 0.22 TCGA-AA-3984-01 4 41985211 41985211 C T DCAF4L1 3'UTR 0.20 TCGA-AA-3984-01 4 41985533 41985533 C T DCAF4L1 3'UTR 0.25 TCGA-AA-3984-01 4 41987486 41987486 G T DCAF4L1 3'UTR 0.15 TCGA-AA-3984-01 4 42022471 42022471 T G SLC30A9 Missense_Mutation p.Y125D 0.09 deleterious(0.01) probably_damaging(0.943) TCGA-AA-3984-01 4 435911 435911 T C ZNF721 Missense_Mutation p.K782R 0.30 deleterious(0.03) benign(0.089) TCGA-AA-3984-01 4 4411402 4411402 G A NSG1 Missense_Mutation p.V117I 0.30 tolerated(0.25) benign(0.016) TCGA-AA-3984-01 4 44450585 44450585 C A KCTD8 5'UTR 0.30 TCGA-AA-3984-01 4 44680726 44680726 G A GUF1 Silent p.G29G 0.26 TCGA-AA-3984-01 4 44685259 44685259 T G GUF1 Missense_Mutation p.L198R 0.12 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 4 46060257 46060257 G A GABRG1 Missense_Mutation p.A298V 0.07 deleterious(0.02) possibly_damaging(0.723) TCGA-AA-3984-01 4 46312201 46312201 T G GABRA2 Missense_Mutation p.K183T 0.24 deleterious(0.03) benign(0.344) TCGA-AA-3984-01 4 46736948 46736948 A G COX7B2 3'UTR 0.28 TCGA-AA-3984-01 4 46967174 46967174 G T GABRA4 Missense_Mutation p.A316D 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 46976370 46976370 C A GABRA4 Missense_Mutation p.M200I 0.16 tolerated(1) probably_damaging(0.997) TCGA-AA-3984-01 4 46994927 46994927 C A GABRA4 Missense_Mutation p.E41D 0.24 tolerated(0.22) probably_damaging(0.997) TCGA-AA-3984-01 4 47163449 47163449 C T GABRB1 Nonsense_Mutation p.R142* 0.17 TCGA-AA-3984-01 4 47514758 47514758 C A ATP10D Missense_Mutation p.F67L 0.12 tolerated(0.38) benign(0.001) TCGA-AA-3984-01 4 47667088 47667088 T G CORIN Missense_Mutation p.K517T 0.29 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 4 47900019 47900019 C T NFXL1 Missense_Mutation p.R390Q 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3984-01 4 47907339 47907339 C T NFXL1 Missense_Mutation p.R144Q 0.12 deleterious(0.03) benign(0.085) TCGA-AA-3984-01 4 48114516 48114516 C T TXK Missense_Mutation p.R63H 0.31 tolerated(0.72) benign(0.001) TCGA-AA-3984-01 4 48502171 48502171 C T FRYL Missense_Mutation p.E2887K 0.09 tolerated(0.53) benign(0.026) TCGA-AA-3984-01 4 48549696 48549696 C T FRYL Missense_Mutation p.R1660Q 0.13 tolerated(0.61) benign(0.006) TCGA-AA-3984-01 4 54292067 54292067 G A FIP1L1 Missense_Mutation p.G318S 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 4 55144636 55144636 G T PDGFRA Nonsense_Mutation p.E704* 0.32 TCGA-AA-3984-01 4 55161379 55161379 C T PDGFRA Silent p.I1070I 0.26 TCGA-AA-3984-01 4 55561832 55561832 G A KIT Silent p.T74T 0.36 TCGA-AA-3984-01 4 55592169 55592169 G A KIT Missense_Mutation p.G498D 0.20 tolerated(0.38) benign(0.02) TCGA-AA-3984-01 4 55972910 55972910 C A KDR Nonsense_Mutation p.G494* 0.29 TCGA-AA-3984-01 4 56230311 56230311 C T SRD5A3 Silent p.F145F 0.13 TCGA-AA-3984-01 4 56336963 56336963 C A CLOCK Missense_Mutation p.G120V 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 4 56840962 56840962 A C CEP135 Missense_Mutation p.K434Q 0.28 tolerated(0.57) probably_damaging(0.917) TCGA-AA-3984-01 4 5750009 5750009 C T EVC Silent p.C358C 0.17 TCGA-AA-3984-01 4 57514930 57514930 G A HOPX 3'UTR 0.10 TCGA-AA-3984-01 4 57777372 57777372 G A REST Missense_Mutation p.E190K 0.27 tolerated(0.07) possibly_damaging(0.562) TCGA-AA-3984-01 4 57797299 57797299 G T REST Nonsense_Mutation p.E759* 0.29 TCGA-AA-3984-01 4 5961133 5961133 A G C4orf50 Missense_Mutation p.V741A 0.30 deleterious(0.04) benign(0.143) TCGA-AA-3984-01 4 6062164 6062164 A G JAKMIP1 Missense_Mutation p.V544A 0.21 tolerated(1) benign(0.001) TCGA-AA-3984-01 4 6107280 6107280 C T JAKMIP1 Missense_Mutation p.D182N 0.33 deleterious(0.03) possibly_damaging(0.804) TCGA-AA-3984-01 4 62598569 62598569 G T LPHN3 Missense_Mutation p.Q164H 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 4 62758570 62758570 C T LPHN3 Silent p.I491I 0.31 TCGA-AA-3984-01 4 6303640 6303640 C T WFS1 Silent p.Y706Y 0.30 TCGA-AA-3984-01 4 65146790 65146790 A C TECRL Missense_Mutation p.I311M 0.25 deleterious(0.01) probably_damaging(0.949) TCGA-AA-3984-01 4 66286215 66286215 C A EPHA5 Nonsense_Mutation p.E491* 0.08 TCGA-AA-3984-01 4 68496215 68496215 G A UBA6 Missense_Mutation p.A766V 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 4 68544195 68544195 G A UBA6 Silent p.F105F 0.23 TCGA-AA-3984-01 4 68919702 68919702 T G TMPRSS11F Silent p.A414A 0.11 TCGA-AA-3984-01 4 69198517 69198517 C T YTHDC1 Missense_Mutation p.R341Q 0.17 tolerated(0.2) benign(0.018) TCGA-AA-3984-01 4 69202828 69202828 C T YTHDC1 Missense_Mutation p.R267Q 0.15 tolerated(0.06) probably_damaging(0.988) TCGA-AA-3984-01 4 69962369 69962369 A G UGT2B7 Missense_Mutation p.D44G 0.35 deleterious(0.05) possibly_damaging(0.691) TCGA-AA-3984-01 4 69974024 69974024 G T UGT2B7 Missense_Mutation p.V432L 0.36 deleterious(0.04) benign(0.152) TCGA-AA-3984-01 4 70080479 70080479 C A UGT2B11 5'Flank 0.26 TCGA-AA-3984-01 4 70146908 70146908 G T UGT2B28 Missense_Mutation p.K230N 0.27 tolerated(0.05) benign(0.114) TCGA-AA-3984-01 4 70155432 70155432 C A UGT2B28 Missense_Mutation p.T351N 0.29 deleterious(0) probably_damaging(0.922) TCGA-AA-3984-01 4 7056724 7056724 G T TADA2B Missense_Mutation p.K402N 0.25 deleterious(0.04) benign(0.081) TCGA-AA-3984-01 4 70898955 70898955 G A HTN3 3'UTR 0.25 TCGA-AA-3984-01 4 71019995 71019995 C T C4orf40 5'UTR 0.25 TCGA-AA-3984-01 4 71099797 71099797 C T FDCSP Missense_Mutation p.R51C 0.32 tolerated_low_confidence(0.11) possibly_damaging(0.835) TCGA-AA-3984-01 4 71201258 71201258 G A CABS1 Missense_Mutation p.D168N 0.26 tolerated(0.22) benign(0.402) TCGA-AA-3984-01 4 71255677 71255677 C T SMR3B 3'UTR 0.29 TCGA-AA-3984-01 4 71465287 71465287 C A AMBN Missense_Mutation p.S73Y 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-AA-3984-01 4 72363252 72363252 C T SLC4A4 Missense_Mutation p.S670L 0.35 deleterious(0.01) benign(0.435) TCGA-AA-3984-01 4 72623787 72623787 G A GC Missense_Mutation p.S287F 0.30 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 4 73169737 73169737 G A ADAMTS3 Missense_Mutation p.S774L 0.11 deleterious(0.03) benign(0.178) TCGA-AA-3984-01 4 73931080 73931080 C T COX18 Missense_Mutation p.R162Q 0.21 deleterious(0.03) possibly_damaging(0.745) TCGA-AA-3984-01 4 73968229 73968229 C T ANKRD17 Silent p.A1479A 0.09 TCGA-AA-3984-01 4 74270880 74270880 T G ALB Missense_Mutation p.F43V 0.31 deleterious(0.03) possibly_damaging(0.863) TCGA-AA-3984-01 4 74285296 74285296 C T ALB Silent p.F575F 0.08 TCGA-AA-3984-01 4 7435848 7435848 G T PSAPL1 Missense_Mutation p.F253L 0.37 tolerated(0.06) benign(0.06) TCGA-AA-3984-01 4 7435974 7435974 C A PSAPL1 Missense_Mutation p.E211D 0.13 tolerated(0.18) benign(0.001) TCGA-AA-3984-01 4 74464384 74464384 C T RASSF6 Silent p.Q71Q 0.11 TCGA-AA-3984-01 4 74702964 74702964 C T CXCL6 Missense_Mutation p.A96V 0.28 deleterious(0.01) benign(0.422) TCGA-AA-3984-01 4 76522340 76522340 T C CDKL2 Silent p.E367E 0.27 TCGA-AA-3984-01 4 76522386 76522386 T G CDKL2 Missense_Mutation p.K352T 0.21 deleterious(0.03) probably_damaging(0.915) TCGA-AA-3984-01 4 76532463 76532463 C T CDKL2 Missense_Mutation p.R149Q 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-AA-3984-01 4 76551126 76551126 C T CDKL2 Missense_Mutation p.G16E 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 76787441 76787441 C T PPEF2 Nonsense_Mutation p.W607* 0.32 TCGA-AA-3984-01 4 76857328 76857328 C A NAAA Missense_Mutation p.L144F 0.20 tolerated(0.08) possibly_damaging(0.85) TCGA-AA-3984-01 4 76871803 76871803 T C SDAD1 3'UTR 0.30 TCGA-AA-3984-01 4 76877209 76877209 C A SDAD1 Missense_Mutation p.K645N 0.09 deleterious(0.01) possibly_damaging(0.896) TCGA-AA-3984-01 4 76924788 76924788 C T CXCL9 Missense_Mutation p.R114Q 0.29 deleterious(0.04) unknown(0) TCGA-AA-3984-01 4 77134659 77134659 G A SCARB2 Missense_Mutation p.S13F 0.34 deleterious(0.01) probably_damaging(0.948) TCGA-AA-3984-01 4 77184970 77184970 A G FAM47E Silent p.K178K 0.23 TCGA-AA-3984-01 4 7719822 7719822 C T SORCS2 Missense_Mutation p.P779L 0.22 deleterious(0.02) benign(0.256) TCGA-AA-3984-01 4 77274392 77274392 C A CCDC158 Nonsense_Mutation p.E777* 0.31 TCGA-AA-3984-01 4 77288483 77288483 T G CCDC158 Missense_Mutation p.E598D 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-AA-3984-01 4 77288909 77288909 C A CCDC158 Missense_Mutation p.K456N 0.15 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 4 78804606 78804606 G A MRPL1 Silent p.K118K 0.16 TCGA-AA-3984-01 4 79782623 79782623 G A BMP2K Splice_Site p.X356_splice 0.25 TCGA-AA-3984-01 4 79793867 79793867 G T BMP2K Nonsense_Mutation p.E570* 0.25 TCGA-AA-3984-01 4 80328235 80328235 G A GK2 Missense_Mutation p.P374S 0.10 tolerated(0.74) benign(0.012) TCGA-AA-3984-01 4 80328851 80328851 A G GK2 Silent p.V168V 0.23 TCGA-AA-3984-01 4 8037938 8037938 C T ABLIM2 Missense_Mutation p.D329N 0.23 deleterious(0.01) possibly_damaging(0.764) TCGA-AA-3984-01 4 81121318 81121318 C T PRDM8 Silent p.S28S 0.20 TCGA-AA-3984-01 4 81967329 81967329 C T BMP3 Missense_Mutation p.P252S 0.23 deleterious(0.02) possibly_damaging(0.468) TCGA-AA-3984-01 4 82126100 82126100 C T PRKG2 Silent p.E34E 0.28 TCGA-AA-3984-01 4 8416596 8416596 C A ACOX3 Missense_Mutation p.K146N 0.17 tolerated(0.09) benign(0.052) TCGA-AA-3984-01 4 84391526 84391526 G A FAM175A Silent p.F102F 0.31 TCGA-AA-3984-01 4 84509418 84509418 C T AGPAT9 Nonsense_Mutation p.R204* 0.31 TCGA-AA-3984-01 4 85612887 85612887 G A WDFY3 Missense_Mutation p.A3034V 0.31 deleterious(0) probably_damaging(0.929) TCGA-AA-3984-01 4 85626633 85626633 C A WDFY3 Missense_Mutation p.R2750I 0.29 deleterious(0) probably_damaging(0.989) TCGA-AA-3984-01 4 85664912 85664912 A C WDFY3 Missense_Mutation p.F2005C 0.24 deleterious(0) possibly_damaging(0.735) TCGA-AA-3984-01 4 8607857 8607857 G A CPZ Missense_Mutation p.R284H 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 4 86938438 86938438 T C MAPK10 Silent p.A446A 0.23 TCGA-AA-3984-01 4 88536591 88536591 G T DSPP Missense_Mutation p.S926I 0.33 unknown(0) TCGA-AA-3984-01 4 88537331 88537331 G A DSPP Missense_Mutation p.D1173N 0.27 unknown(0) TCGA-AA-3984-01 4 88959641 88959641 G A PKD2 Missense_Mutation p.R361Q 0.33 tolerated(0.58) benign(0.019) TCGA-AA-3984-01 4 88989210 88989210 A G PKD2 Missense_Mutation p.Q840R 0.09 tolerated(0.08) benign(0.262) TCGA-AA-3984-01 4 89013497 89013497 G A ABCG2 Silent p.I619I 0.18 TCGA-AA-3984-01 4 89319298 89319298 C T HERC6 Silent p.F343F 0.27 TCGA-AA-3984-01 4 89356891 89356891 G A HERC6 Silent p.K755K 0.17 TCGA-AA-3984-01 4 89363508 89363508 C A HERC6 Missense_Mutation p.L989I 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 4 89408222 89408222 C T HERC5 Silent p.D618D 0.17 TCGA-AA-3984-01 4 89660264 89660264 C T FAM13A Missense_Mutation p.E827K 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 4 89702486 89702486 C A FAM13A Nonsense_Mutation p.E430* 0.17 TCGA-AA-3984-01 4 90034555 90034555 A C TIGD2 Missense_Mutation p.K144Q 0.33 tolerated(0.16) possibly_damaging(0.889) TCGA-AA-3984-01 4 90034590 90034590 T G TIGD2 Missense_Mutation p.F155L 0.10 deleterious(0.01) probably_damaging(0.942) TCGA-AA-3984-01 4 90035421 90035421 C T TIGD2 Silent p.F432F 0.23 TCGA-AA-3984-01 4 90035880 90035880 G A TIGD2 3'UTR 0.10 TCGA-AA-3984-01 4 90816465 90816465 C A MMRN1 Missense_Mutation p.L115I 0.34 tolerated_low_confidence(0.28) benign(0.043) TCGA-AA-3984-01 4 91230555 91230555 G T CCSER1 Nonsense_Mutation p.E374* 0.26 TCGA-AA-3984-01 4 93511399 93511399 T G GRID2 Missense_Mutation p.F69C 0.11 tolerated(0.18) probably_damaging(0.976) TCGA-AA-3984-01 4 94693356 94693356 C T GRID2 Missense_Mutation p.P911S 0.30 tolerated_low_confidence(0.19) benign(0.358) TCGA-AA-3984-01 4 95129606 95129606 C G SMARCAD1 Missense_Mutation p.P21A 0.18 tolerated_low_confidence(0.07) benign(0.058) TCGA-AA-3984-01 4 95201932 95201932 G A SMARCAD1 Splice_Site p.X871_splice 0.23 TCGA-AA-3984-01 4 96035959 96035959 G A BMPR1B Missense_Mutation p.D108N 0.27 tolerated(0.5) benign(0.011) TCGA-AA-3984-01 4 96052581 96052581 G A BMPR1B Missense_Mutation p.D362N 0.24 deleterious(0) possibly_damaging(0.905) TCGA-AA-3984-01 4 96761336 96761336 G A PDHA2 Missense_Mutation p.R12Q 0.27 tolerated(0.65) benign(0.044) TCGA-AA-3984-01 4 9783904 9783904 C T DRD5 Missense_Mutation p.A84V 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 4 9784321 9784321 G A DRD5 Missense_Mutation p.R223Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 4 98902319 98902319 C T STPG2 Missense_Mutation p.E255K 0.08 tolerated(0.61) benign(0.009) TCGA-AA-3984-01 4 99341226 99341226 C A RAP1GDS1 Missense_Mutation p.L412I 0.20 tolerated(0.07) probably_damaging(0.95) TCGA-AA-3984-01 4 998227 998227 G A IDUA 3'UTR 0.24 TCGA-AA-3984-01 4 9982321 9982321 G A SLC2A9 Silent p.I192I 0.25 TCGA-AA-3984-01 5 100147754 100147754 C A ST8SIA4 Missense_Mutation p.D293Y 0.12 probably_damaging(0.985) TCGA-AA-3984-01 5 101592851 101592851 C T SLCO4C1 Silent p.E479E 0.12 TCGA-AA-3984-01 5 101795417 101795417 C T SLCO6A1 Missense_Mutation p.A322T 0.25 tolerated(0.45) benign(0.034) TCGA-AA-3984-01 5 102360976 102360976 C T PAM Missense_Mutation p.P876L 0.16 tolerated(0.08) probably_damaging(0.996) TCGA-AA-3984-01 5 102503968 102503968 C T PPIP5K2 Missense_Mutation p.S752L 0.09 deleterious(0) possibly_damaging(0.814) TCGA-AA-3984-01 5 102537548 102537548 G A PPIP5K2 3'UTR 0.39 TCGA-AA-3984-01 5 102612980 102612980 C G C5orf30 3'UTR 0.11 TCGA-AA-3984-01 5 102886665 102886665 T C NUDT12 Missense_Mutation p.D429G 0.33 deleterious(0.02) probably_damaging(0.976) TCGA-AA-3984-01 5 102895945 102895945 G A NUDT12 Missense_Mutation p.S2F 0.22 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-AA-3984-01 5 10461439 10461439 G A ROPN1L Silent p.T187T 0.15 TCGA-AA-3984-01 5 10461440 10461440 G A ROPN1L Missense_Mutation p.E188K 0.16 tolerated(0.08) benign(0.026) TCGA-AA-3984-01 5 10465116 10465116 A C ROPN1L 3'UTR 0.10 TCGA-AA-3984-01 5 107197555 107197555 C T FBXL17 Missense_Mutation p.E658K 0.24 tolerated(0.14) benign(0.086) TCGA-AA-3984-01 5 108171463 108171463 G T FER Nonsense_Mutation p.E146* 0.20 TCGA-AA-3984-01 5 110407211 110407211 G A TSLP 5'Flank 0.27 TCGA-AA-3984-01 5 110439606 110439606 C A WDR36 Nonsense_Mutation p.S296* 0.09 TCGA-AA-3984-01 5 111091560 111091560 C T NREP Intron 0.32 TCGA-AA-3984-01 5 112173283 112173283 T G APC Silent p.T664T 0.30 TCGA-AA-3984-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.27 TCGA-AA-3984-01 5 112178000 112178000 C T APC Nonsense_Mutation p.R2237* 0.24 TCGA-AA-3984-01 5 112179642 112179642 T G APC Missense_Mutation p.F2784C 0.27 probably_damaging(1) TCGA-AA-3984-01 5 112214337 112214337 G T REEP5 3'UTR 0.26 TCGA-AA-3984-01 5 112256884 112256884 C T REEP5 Missense_Mutation p.G63E 0.40 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 5 112362881 112362881 G A MCC 3'Flank 0.19 TCGA-AA-3984-01 5 112769771 112769771 C T TSSK1B Missense_Mutation p.D256N 0.21 tolerated(0.26) benign(0.394) TCGA-AA-3984-01 5 112902950 112902950 C T YTHDC2 Nonsense_Mutation p.R1002* 0.21 TCGA-AA-3984-01 5 11346675 11346675 C A CTNND2 Missense_Mutation p.Q479H 0.34 tolerated_low_confidence(0.07) possibly_damaging(0.799) TCGA-AA-3984-01 5 113740367 113740367 T C KCNN2 Missense_Mutation p.V272A 0.24 tolerated(0.09) possibly_damaging(0.9) TCGA-AA-3984-01 5 114466469 114466469 C T TRIM36 Missense_Mutation p.R551H 0.07 tolerated(0.07) probably_damaging(0.999) TCGA-AA-3984-01 5 114482987 114482987 T A TRIM36 Missense_Mutation p.N135Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 114604673 114604673 G A CCDC112 Missense_Mutation p.P485S 0.31 deleterious(0.02) benign(0.351) TCGA-AA-3984-01 5 115249263 115249263 A C AP3S1 3'UTR 0.14 TCGA-AA-3984-01 5 115319031 115319031 T C AQPEP Missense_Mutation p.F248S 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 5 115320353 115320353 G A AQPEP Missense_Mutation p.A309T 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 5 115336806 115336806 A C AQPEP Missense_Mutation p.K564Q 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3984-01 5 115338990 115338990 G A AQPEP Silent p.L650L 0.21 TCGA-AA-3984-01 5 11732266 11732266 G A CTNND2 Silent p.L52L 0.33 TCGA-AA-3984-01 5 118176696 118176696 T G DTWD2 Missense_Mutation p.K271N 0.26 deleterious(0) benign(0.411) TCGA-AA-3984-01 5 118485181 118485181 C T DMXL1 Missense_Mutation p.S1220L 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 118532070 118532070 T G DMXL1 Missense_Mutation p.S2488A 0.19 tolerated(0.73) benign(0.012) TCGA-AA-3984-01 5 118968538 118968538 G A FAM170A Missense_Mutation p.E56K 0.25 deleterious(0.04) benign(0.211) TCGA-AA-3984-01 5 122359633 122359633 C T PPIC Silent p.S192S 0.08 TCGA-AA-3984-01 5 122725784 122725784 C A CEP120 Missense_Mutation p.K363N 0.11 tolerated(0.2) benign(0.002) TCGA-AA-3984-01 5 123979353 123979353 G T ZNF608 Missense_Mutation p.H1383N 0.28 tolerated(0.42) probably_damaging(0.99) TCGA-AA-3984-01 5 123984155 123984155 C A ZNF608 Missense_Mutation p.R641I 0.31 tolerated(0.07) possibly_damaging(0.629) TCGA-AA-3984-01 5 125696038 125696038 G A GRAMD3 Silent p.Q5Q 0.29 TCGA-AA-3984-01 5 125939519 125939519 G T PHAX Missense_Mutation p.W118C 0.06 deleterious(0) probably_damaging(0.956) TCGA-AA-3984-01 5 126161789 126161789 C A LMNB1 Missense_Mutation p.S534Y 0.07 deleterious(0) possibly_damaging(0.834) TCGA-AA-3984-01 5 126705623 126705623 T C MEGF10 Missense_Mutation p.V114A 0.25 tolerated(0.1) benign(0.242) TCGA-AA-3984-01 5 127448597 127448597 T C SLC12A2 Missense_Mutation p.V283A 0.19 deleterious(0.01) benign(0.326) TCGA-AA-3984-01 5 127516606 127516606 G A SLC12A2 Silent p.T1044T 0.22 TCGA-AA-3984-01 5 127520545 127520545 T C SLC12A2 Missense_Mutation p.V1167A 0.32 tolerated(0.1) probably_damaging(0.997) TCGA-AA-3984-01 5 127614367 127614367 C A FBN2 Missense_Mutation p.K2435N 0.28 deleterious(0.04) possibly_damaging(0.758) TCGA-AA-3984-01 5 127624878 127624878 G T FBN2 Missense_Mutation p.S2193Y 0.35 deleterious(0) probably_damaging(0.987) TCGA-AA-3984-01 5 128302092 128302092 A C SLC27A6 Silent p.R88R 0.33 TCGA-AA-3984-01 5 128359368 128359368 G T SLC27A6 Missense_Mutation p.R407I 0.28 deleterious(0.01) benign(0.366) TCGA-AA-3984-01 5 128362872 128362872 C A SLC27A6 Missense_Mutation p.F434L 0.16 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 5 128365369 128365369 C T SLC27A6 Missense_Mutation p.A551V 0.25 tolerated(0.13) benign(0.347) TCGA-AA-3984-01 5 129030535 129030535 C T ADAMTS19 Missense_Mutation p.P975S 0.07 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 5 129070678 129070678 T C ADAMTS19 Silent p.H1116H 0.10 TCGA-AA-3984-01 5 131014771 131014771 G A FNIP1 Missense_Mutation p.R434C 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3984-01 5 131398478 131398478 C A IL3 Silent p.I151I 0.32 TCGA-AA-3984-01 5 132018272 132018272 C T IL4 Missense_Mutation p.S152L 0.36 deleterious(0.04) benign(0.002) TCGA-AA-3984-01 5 132087621 132087621 C T SEPT8 3'UTR 0.29 TCGA-AA-3984-01 5 132210156 132210156 G T LEAP2 3'UTR 0.35 TCGA-AA-3984-01 5 132232041 132232041 A C AFF4 Missense_Mutation p.S761A 0.22 tolerated(0.33) probably_damaging(0.991) TCGA-AA-3984-01 5 132424191 132424191 G T HSPA4 Nonsense_Mutation p.E361* 0.32 TCGA-AA-3984-01 5 132432942 132432942 G A HSPA4 Silent p.K631K 0.22 TCGA-AA-3984-01 5 133316488 133316488 T G VDAC1 Missense_Mutation p.K161N 0.28 tolerated(0.05) benign(0.079) TCGA-AA-3984-01 5 133644344 133644344 G A CDKL3 Missense_Mutation p.S319F 0.08 tolerated(0.12) benign(0.003) TCGA-AA-3984-01 5 133655121 133655121 A G CDKL3 Silent p.P240P 0.11 TCGA-AA-3984-01 5 133655157 133655157 A T CDKL3 Missense_Mutation p.F228L 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 134044438 134044438 G A SEC24A Missense_Mutation p.A863T 0.11 deleterious(0.02) possibly_damaging(0.639) TCGA-AA-3984-01 5 134074443 134074443 A C CAMLG Missense_Mutation p.N45H 0.27 deleterious(0) possibly_damaging(0.583) TCGA-AA-3984-01 5 134113368 134113368 A C DDX46 Missense_Mutation p.K240Q 0.09 tolerated(0.16) possibly_damaging(0.791) TCGA-AA-3984-01 5 134131698 134131698 G T DDX46 Missense_Mutation p.K604N 0.32 tolerated(0.26) benign(0.002) TCGA-AA-3984-01 5 134194693 134194693 C A C5orf24 3'UTR 0.28 TCGA-AA-3984-01 5 134332181 134332181 C T CATSPER3 Silent p.I157I 0.24 TCGA-AA-3984-01 5 135170558 135170558 G T SLC25A48 Missense_Mutation p.D8Y 0.14 deleterious(0.03) benign(0.178) TCGA-AA-3984-01 5 135276743 135276743 C G FBXL21 RNA 0.28 TCGA-AA-3984-01 5 136315106 136315106 G A SPOCK1 Silent p.C348C 0.29 TCGA-AA-3984-01 5 137028033 137028033 C T KLHL3 Missense_Mutation p.R156H 0.06 deleterious(0.01) probably_damaging(0.981) TCGA-AA-3984-01 5 137071409 137071409 C A KLHL3 5'UTR 0.26 TCGA-AA-3984-01 5 13708418 13708418 C T DNAH5 Silent p.G4384G 0.09 TCGA-AA-3984-01 5 137228279 137228279 C T PKD2L2 Missense_Mutation p.R82C 0.26 tolerated(0.07) benign(0.033) TCGA-AA-3984-01 5 137230262 137230262 A C PKD2L2 Missense_Mutation p.E163A 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 13735399 13735399 T C DNAH5 Missense_Mutation p.I3868V 0.26 benign(0.031) TCGA-AA-3984-01 5 13754320 13754320 C A DNAH5 Missense_Mutation p.R3516I 0.30 possibly_damaging(0.639) TCGA-AA-3984-01 5 13769655 13769655 T G DNAH5 Missense_Mutation p.E3225D 0.30 possibly_damaging(0.523) TCGA-AA-3984-01 5 137717221 137717221 C T KDM3B Missense_Mutation p.S241L 0.29 tolerated(0.36) benign(0.011) TCGA-AA-3984-01 5 137780221 137780221 G T REEP2 Missense_Mutation p.E100D 0.16 deleterious(0) probably_damaging(0.972) TCGA-AA-3984-01 5 137780452 137780452 G A REEP2 Missense_Mutation p.E105K 0.11 deleterious(0.02) possibly_damaging(0.541) TCGA-AA-3984-01 5 13794052 13794052 C T DNAH5 Missense_Mutation p.G2668E 0.25 probably_damaging(0.982) TCGA-AA-3984-01 5 138386648 138386648 C T SIL1 Missense_Mutation p.R111Q 0.27 tolerated(0.32) benign(0.001) TCGA-AA-3984-01 5 13868056 13868056 C T DNAH5 Missense_Mutation p.E1294K 0.28 benign(0.002) TCGA-AA-3984-01 5 138860400 138860400 G A TMEM173 Silent p.I165I 0.06 TCGA-AA-3984-01 5 13920594 13920594 C T DNAH5 Missense_Mutation p.E265K 0.27 possibly_damaging(0.621) TCGA-AA-3984-01 5 13928247 13928247 C T DNAH5 Missense_Mutation p.R78Q 0.09 benign(0.238) TCGA-AA-3984-01 5 139494275 139494277 TCC - PURA In_Frame_Del p.I170_R171delinsS 0.24 TCGA-AA-3984-01 5 139495060 139495060 A G PURA 3'UTR 0.29 TCGA-AA-3984-01 5 139661167 139661167 C A PFDN1 Intron 0.29 TCGA-AA-3984-01 5 139907896 139907896 C A ANKHD1 Missense_Mutation p.H1789N 0.33 benign(0.025) TCGA-AA-3984-01 5 139941773 139941773 T G APBB3 Missense_Mutation p.S180R 0.36 tolerated(0.06) probably_damaging(0.998) TCGA-AA-3984-01 5 140048358 140048358 A C WDR55 Missense_Mutation p.K181T 0.37 deleterious(0.01) probably_damaging(0.978) TCGA-AA-3984-01 5 140076627 140076627 A G HARS2 Missense_Mutation p.Y309C 0.23 deleterious(0) possibly_damaging(0.815) TCGA-AA-3984-01 5 140085212 140085212 A C ZMAT2 Missense_Mutation p.K157N 0.20 tolerated(0.07) possibly_damaging(0.666) TCGA-AA-3984-01 5 140166467 140166467 A C PCDHA1 Missense_Mutation p.K198Q 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.671) TCGA-AA-3984-01 5 140174850 140174850 G A PCDHA2 Missense_Mutation p.E101K 0.40 tolerated_low_confidence(0.12) benign(0.092) TCGA-AA-3984-01 5 140188840 140188840 G A PCDHA4 Missense_Mutation p.D690N 0.18 deleterious_low_confidence(0.02) benign(0.042) TCGA-AA-3984-01 5 140202018 140202018 G A PCDHA5 Missense_Mutation p.E220K 0.36 tolerated_low_confidence(0.05) benign(0.429) TCGA-AA-3984-01 5 140215936 140215936 G A PCDHA7 Silent p.E656E 0.24 TCGA-AA-3984-01 5 140222028 140222028 G T PCDHA8 Silent p.V374V 0.08 TCGA-AA-3984-01 5 140223151 140223151 T C PCDHA8 Missense_Mutation p.S749P 0.12 deleterious_low_confidence(0.01) benign(0.117) TCGA-AA-3984-01 5 140229827 140229827 C T PCDHA9 Missense_Mutation p.R583W 0.31 tolerated_low_confidence(0.07) benign(0.036) TCGA-AA-3984-01 5 140231769 140231769 A C PCDHA9 Intron 0.09 TCGA-AA-3984-01 5 140236012 140236012 G A PCDHA10 Missense_Mutation p.D127N 0.25 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-AA-3984-01 5 140236189 140236189 G T PCDHA10 Missense_Mutation p.D186Y 0.22 deleterious_low_confidence(0.01) benign(0.033) TCGA-AA-3984-01 5 140262269 140262269 G A PCDHA13 Missense_Mutation p.R139Q 0.14 tolerated_low_confidence(0.25) benign(0.187) TCGA-AA-3984-01 5 140307066 140307066 G A PCDHAC1 Missense_Mutation p.A197T 0.15 tolerated(0.26) benign(0.112) TCGA-AA-3984-01 5 140307679 140307679 G A PCDHAC1 Missense_Mutation p.G401E 0.11 tolerated(0.35) possibly_damaging(0.515) TCGA-AA-3984-01 5 140432458 140432458 C T PCDHB1 Missense_Mutation p.A468V 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 5 140433239 140433239 G A PCDHB1 Silent p.E728E 0.10 TCGA-AA-3984-01 5 140481427 140481427 G T PCDHB3 Missense_Mutation p.E398D 0.30 tolerated_low_confidence(0.09) benign(0.017) TCGA-AA-3984-01 5 140482476 140482476 G A PCDHB3 Missense_Mutation p.S748N 0.38 tolerated_low_confidence(0.08) benign(0.031) TCGA-AA-3984-01 5 140502496 140502496 T A PCDHB4 Missense_Mutation p.L306M 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-AA-3984-01 5 140503701 140503701 C T PCDHB4 Silent p.F707F 0.24 TCGA-AA-3984-01 5 140515167 140515167 G T PCDHB5 Missense_Mutation p.D51Y 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AA-3984-01 5 140516479 140516479 C T PCDHB5 Missense_Mutation p.S488L 0.33 deleterious_low_confidence(0) benign(0.112) TCGA-AA-3984-01 5 140531159 140531159 G A PCDHB6 Missense_Mutation p.D441N 0.11 deleterious(0) possibly_damaging(0.482) TCGA-AA-3984-01 5 140531209 140531209 C T PCDHB6 Silent p.F457F 0.29 TCGA-AA-3984-01 5 140537285 140537285 C T PCDHB17 Missense_Mutation p.A570V 0.25 tolerated_low_confidence(0.16) benign(0.334) TCGA-AA-3984-01 5 140552956 140552956 T G PCDHB7 Missense_Mutation p.I180M 0.34 deleterious_low_confidence(0.01) benign(0.439) TCGA-AA-3984-01 5 140555389 140555389 C T PCDHB7 3'UTR 0.28 TCGA-AA-3984-01 5 140558765 140558765 T C PCDHB8 Missense_Mutation p.C384R 0.27 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-AA-3984-01 5 140559199 140559199 C T PCDHB8 Silent p.F528F 0.33 TCGA-AA-3984-01 5 140562482 140562482 A G PCDHB16 Missense_Mutation p.I116M 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.643) TCGA-AA-3984-01 5 140572111 140572111 A G PCDHB10 5'UTR 0.19 TCGA-AA-3984-01 5 140572226 140572226 C T PCDHB10 Missense_Mutation p.S34L 0.21 deleterious_low_confidence(0.01) benign(0.332) TCGA-AA-3984-01 5 140573637 140573637 C A PCDHB10 Silent p.V504V 0.30 TCGA-AA-3984-01 5 140579801 140579801 T G PCDHB11 Missense_Mutation p.F152V 0.21 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-AA-3984-01 5 140594526 140594526 G T PCDHB13 Missense_Mutation p.E277D 0.06 tolerated_low_confidence(0.09) benign(0.011) TCGA-AA-3984-01 5 140700023 140700023 C T TAF7 5'UTR 0.32 TCGA-AA-3984-01 5 140711178 140711178 C T PCDHGA1 Silent p.F309F 0.23 TCGA-AA-3984-01 5 140719008 140719008 C T PCDHGA2 Missense_Mutation p.A157V 0.35 tolerated_low_confidence(0.11) possibly_damaging(0.733) TCGA-AA-3984-01 5 140723938 140723938 A C PCDHGA3 Missense_Mutation p.K113T 0.09 tolerated_low_confidence(0.14) benign(0.043) TCGA-AA-3984-01 5 140730930 140730930 G A PCDHGB1 Missense_Mutation p.R368Q 0.16 tolerated(0.29) benign(0.079) TCGA-AA-3984-01 5 140731400 140731400 G A PCDHGB1 Missense_Mutation p.E525K 0.24 tolerated(0.07) benign(0.072) TCGA-AA-3984-01 5 140740267 140740267 C T PCDHGB2 Missense_Mutation p.R189C 0.19 deleterious(0.02) possibly_damaging(0.86) TCGA-AA-3984-01 5 140740800 140740800 C T PCDHGB2 Silent p.I366I 0.13 TCGA-AA-3984-01 5 140744933 140744933 G A PCDHGA5 Missense_Mutation p.E346K 0.25 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-AA-3984-01 5 140745573 140745573 C T PCDHGA5 Missense_Mutation p.T559M 0.34 deleterious_low_confidence(0.05) benign(0.046) TCGA-AA-3984-01 5 140750293 140750293 A G PCDHGB3 Missense_Mutation p.E111G 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 140763530 140763530 C A PCDHGA7 Nonsense_Mutation p.S355* 0.27 TCGA-AA-3984-01 5 140788198 140788198 C T PCDHGB6 Silent p.F143F 0.23 TCGA-AA-3984-01 5 140811390 140811390 C T PCDHGA12 Missense_Mutation p.S355L 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.502) TCGA-AA-3984-01 5 140812288 140812288 C T PCDHGA12 Silent p.L654L 0.31 TCGA-AA-3984-01 5 140865191 140865191 C T PCDHGC4 Missense_Mutation p.R151C 0.39 deleterious(0) probably_damaging(0.94) TCGA-AA-3984-01 5 141019146 141019146 C T RELL2 Missense_Mutation p.R145C 0.25 deleterious(0) benign(0.027) TCGA-AA-3984-01 5 141019766 141019766 G A RELL2 Silent p.E261E 0.37 TCGA-AA-3984-01 5 141313816 141313816 T G KIAA0141 Nonsense_Mutation p.Y303* 0.38 TCGA-AA-3984-01 5 141336574 141336574 G A PCDH12 Silent p.F281F 0.21 TCGA-AA-3984-01 5 142311620 142311620 T C ARHGAP26 Missense_Mutation p.V346A 0.13 tolerated(0.12) benign(0.153) TCGA-AA-3984-01 5 142661399 142661399 A C NR3C1 3'UTR 0.10 TCGA-AA-3984-01 5 143545145 143545145 G A YIPF5 Missense_Mutation p.S45L 0.12 tolerated(0.42) benign(0.047) TCGA-AA-3984-01 5 145536975 145536975 T G LARS Missense_Mutation p.L352F 0.30 tolerated(0.21) benign(0.04) TCGA-AA-3984-01 5 145603076 145603076 G T RBM27 Nonsense_Mutation p.E97* 0.29 TCGA-AA-3984-01 5 146754684 146754684 A C STK32A Missense_Mutation p.E312A 0.22 deleterious(0) benign(0.341) TCGA-AA-3984-01 5 147016577 147016577 T G JAKMIP2 Missense_Mutation p.Y522S 0.28 tolerated(0.5) probably_damaging(0.991) TCGA-AA-3984-01 5 147019219 147019219 G T JAKMIP2 Silent p.I502I 0.24 TCGA-AA-3984-01 5 147051340 147051340 C A JAKMIP2 Missense_Mutation p.E10D 0.31 tolerated(0.5) benign(0.006) TCGA-AA-3984-01 5 147051407 147051407 C A JAKMIP2 5'UTR 0.33 TCGA-AA-3984-01 5 14716866 14716866 C T ANKH Missense_Mutation p.A364T 0.12 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 5 147503414 147503414 C T SPINK5 Nonsense_Mutation p.R853* 0.22 TCGA-AA-3984-01 5 147505144 147505144 C T SPINK5 Missense_Mutation p.R933C 0.33 tolerated(0.09) benign(0) TCGA-AA-3984-01 5 147506638 147506638 C A SPINK5 Missense_Mutation p.S1017Y 0.08 deleterious(0) possibly_damaging(0.891) TCGA-AA-3984-01 5 14751255 14751255 G A ANKH Missense_Mutation p.R204C 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 147582576 147582576 T C SPINK6 5'UTR 0.23 TCGA-AA-3984-01 5 148629378 148629378 C T ABLIM3 Missense_Mutation p.S567F 0.26 tolerated(0.23) benign(0.005) TCGA-AA-3984-01 5 149360414 149360414 G A SLC26A2 Missense_Mutation p.A420T 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 5 149755720 149755720 G A TCOF1 Missense_Mutation p.A657T 0.30 tolerated(0.42) benign(0.005) TCGA-AA-3984-01 5 149755729 149755729 C T TCOF1 Nonsense_Mutation p.R660* 0.32 TCGA-AA-3984-01 5 150310686 150310686 C A ZNF300P1 RNA 0.16 TCGA-AA-3984-01 5 150311172 150311172 C A ZNF300P1 RNA 0.24 TCGA-AA-3984-01 5 150656841 150656841 G T SLC36A3 3'Flank 0.33 TCGA-AA-3984-01 5 150656953 150656953 A C SLC36A3 3'UTR 0.27 TCGA-AA-3984-01 5 150911472 150911472 C T FAT2 Missense_Mutation p.D3163N 0.12 possibly_damaging(0.756) TCGA-AA-3984-01 5 150922455 150922455 C A FAT2 Missense_Mutation p.D2745Y 0.24 possibly_damaging(0.812) TCGA-AA-3984-01 5 150922764 150922764 C T FAT2 Missense_Mutation p.V2642M 0.28 possibly_damaging(0.512) TCGA-AA-3984-01 5 150923503 150923503 T C FAT2 Silent p.G2395G 0.23 TCGA-AA-3984-01 5 150946913 150946913 C A FAT2 Missense_Mutation p.R527I 0.36 probably_damaging(1) TCGA-AA-3984-01 5 150947657 150947657 G A FAT2 Missense_Mutation p.A279V 0.20 benign(0.341) TCGA-AA-3984-01 5 151052767 151052767 C T SPARC Missense_Mutation p.G44E 0.21 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 5 151179526 151179526 G A G3BP1 Missense_Mutation p.R307Q 0.27 tolerated(0.21) benign(0) TCGA-AA-3984-01 5 151771915 151771915 C T NMUR2 Missense_Mutation p.R362Q 0.28 tolerated(0.49) benign(0.003) TCGA-AA-3984-01 5 153030051 153030051 C T GRIA1 Missense_Mutation p.R218C 0.29 deleterious(0.01) possibly_damaging(0.759) TCGA-AA-3984-01 5 153078473 153078473 G A GRIA1 Missense_Mutation p.G441D 0.22 tolerated(0.11) benign(0.162) TCGA-AA-3984-01 5 153149797 153149797 C T GRIA1 Missense_Mutation p.R708W 0.31 deleterious(0) probably_damaging(0.968) TCGA-AA-3984-01 5 153149890 153149890 C T GRIA1 Missense_Mutation p.R739W 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 5 153435911 153435911 C T MFAP3 3'UTR 0.24 TCGA-AA-3984-01 5 153436161 153436161 T G MFAP3 3'UTR 0.21 TCGA-AA-3984-01 5 153765981 153765981 C T GALNT10 Silent p.I349I 0.28 TCGA-AA-3984-01 5 154244779 154244779 C T CNOT8 Nonsense_Mutation p.R49* 0.09 TCGA-AA-3984-01 5 154395261 154395261 G T KIF4B Missense_Mutation p.K614N 0.29 deleterious(0.02) probably_damaging(0.963) TCGA-AA-3984-01 5 156565953 156565953 T C MED7 Missense_Mutation p.I164V 0.11 tolerated(0.3) benign(0.177) TCGA-AA-3984-01 5 156590498 156590498 C A FAM71B Nonsense_Mutation p.G260* 0.11 TCGA-AA-3984-01 5 156649963 156649963 G A ITK Missense_Mutation p.E196K 0.29 tolerated(0.33) benign(0.107) TCGA-AA-3984-01 5 156752608 156752608 G A CYFIP2 Silent p.T622T 0.12 TCGA-AA-3984-01 5 156766139 156766139 C T CYFIP2 Silent p.F794F 0.13 TCGA-AA-3984-01 5 156932740 156932740 T G ADAM19 Missense_Mutation p.D356A 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 5 157214620 157214620 A C CLINT1 3'UTR 0.09 TCGA-AA-3984-01 5 158135057 158135057 G A EBF1 Silent p.F558F 0.09 TCGA-AA-3984-01 5 158697613 158697613 A C UBLCP1 Missense_Mutation p.K137T 0.23 deleterious(0) probably_damaging(0.939) TCGA-AA-3984-01 5 159821233 159821233 C A C5orf54 Missense_Mutation p.R422I 0.16 deleterious(0.01) benign(0.054) TCGA-AA-3984-01 5 161531030 161531030 C T GABRG2 Missense_Mutation p.S296F 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 5 162918204 162918204 C T HMMR 3'UTR 0.25 TCGA-AA-3984-01 5 162930246 162930246 G A MAT2B 5'Flank 0.24 TCGA-AA-3984-01 5 162945299 162945299 G A MAT2B Missense_Mutation p.R312Q 0.33 tolerated(0.21) benign(0.056) TCGA-AA-3984-01 5 16483478 16483478 A C FAM134B Missense_Mutation p.F188V 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 16681987 16681987 G A MYO10 Silent p.I1394I 0.32 TCGA-AA-3984-01 5 167489225 167489225 C A TENM2 Silent p.L490L 0.28 TCGA-AA-3984-01 5 16758256 16758256 G A MYO10 Missense_Mutation p.R607W 0.11 deleterious(0) possibly_damaging(0.907) TCGA-AA-3984-01 5 167654908 167654908 C T TENM2 Missense_Mutation p.R1765W 0.31 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 5 168222553 168222553 G A SLIT3 Silent p.I322I 0.29 TCGA-AA-3984-01 5 169116288 169116288 G A DOCK2 Missense_Mutation p.G265D 0.13 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 5 169125383 169125383 G A DOCK2 Missense_Mutation p.D329N 0.26 deleterious(0.04) possibly_damaging(0.677) TCGA-AA-3984-01 5 169141434 169141434 G T DOCK2 Missense_Mutation p.K638N 0.08 deleterious(0.01) possibly_damaging(0.806) TCGA-AA-3984-01 5 169310490 169310490 A G FAM196B Missense_Mutation p.L138P 0.40 deleterious(0) probably_damaging(0.944) TCGA-AA-3984-01 5 169484581 169484581 C T DOCK2 Intron 0.14 TCGA-AA-3984-01 5 169680132 169680132 C T LCP2 Silent p.A412A 0.09 TCGA-AA-3984-01 5 169812403 169812403 G T KCNMB1 Missense_Mutation p.L17I 0.24 tolerated(0.72) probably_damaging(0.999) TCGA-AA-3984-01 5 170224492 170224492 A G GABRP Missense_Mutation p.N161D 0.20 tolerated(0.64) probably_damaging(0.926) TCGA-AA-3984-01 5 172590860 172590860 C T BNIP1 Missense_Mutation p.A251V 0.39 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 5 175716762 175716762 A G SIMC1 Intron 0.10 TCGA-AA-3984-01 5 176297433 176297433 C T UNC5A Missense_Mutation p.R262W 0.13 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 5 176304684 176304684 T G UNC5A Missense_Mutation p.S539A 0.10 tolerated(0.33) possibly_damaging(0.796) TCGA-AA-3984-01 5 176638117 176638117 A C NSD1 Missense_Mutation p.K906T 0.35 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-AA-3984-01 5 176709529 176709529 C T NSD1 Missense_Mutation p.R1986C 0.12 deleterious(0) probably_damaging(0.986) TCGA-AA-3984-01 5 176861904 176861904 G A GRK6 Missense_Mutation p.D311N 0.28 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 5 177651678 177651678 G A PHYKPL Missense_Mutation p.R156C 0.11 deleterious(0.01) benign(0.052) TCGA-AA-3984-01 5 178339712 178339712 T C ZFP2 5'UTR 0.24 TCGA-AA-3984-01 5 178359721 178359721 T C ZFP2 3'UTR 0.28 TCGA-AA-3984-01 5 178413928 178413928 C T GRM6 Missense_Mutation p.D471N 0.24 tolerated(0.53) benign(0.318) TCGA-AA-3984-01 5 178460040 178460040 G A ZNF879 Missense_Mutation p.R364Q 0.11 deleterious(0.05) probably_damaging(0.977) TCGA-AA-3984-01 5 178700026 178700026 C T ADAMTS2 Missense_Mutation p.E192K 0.22 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 5 179669692 179669692 T G MAPK9 Missense_Mutation p.K251T 0.17 deleterious(0) probably_damaging(0.955) TCGA-AA-3984-01 5 179765547 179765547 C T GFPT2 Missense_Mutation p.E21K 0.29 tolerated(0.13) benign(0.014) TCGA-AA-3984-01 5 180276838 180276838 G A ZFP62 Nonsense_Mutation p.R553* 0.09 TCGA-AA-3984-01 5 1878854 1878854 G A IRX4 Silent p.F263F 0.28 TCGA-AA-3984-01 5 19721468 19721468 C T CDH18 Missense_Mutation p.D211N 0.30 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 5 20737182 20737182 A G RP11-774D14.1 RNA 0.32 TCGA-AA-3984-01 5 22078746 22078746 G T CDH12 Missense_Mutation p.L14M 0.24 tolerated(0.3) probably_damaging(0.969) TCGA-AA-3984-01 5 23509653 23509653 A C PRDM9 Missense_Mutation p.K48N 0.15 deleterious_low_confidence(0) benign(0.437) TCGA-AA-3984-01 5 23521277 23521277 G T PRDM9 Missense_Mutation p.R166I 0.28 deleterious_low_confidence(0.03) benign(0.007) TCGA-AA-3984-01 5 26885917 26885917 G A CDH9 Missense_Mutation p.T563I 0.17 tolerated(0.3) benign(0.005) TCGA-AA-3984-01 5 26902701 26902701 C A CDH9 Missense_Mutation p.E379D 0.22 deleterious(0) probably_damaging(0.97) TCGA-AA-3984-01 5 31317842 31317842 C A CDH6 Missense_Mutation p.L565I 0.10 tolerated(0.15) benign(0.006) TCGA-AA-3984-01 5 31799341 31799341 C T PDZD2 5'UTR 0.16 TCGA-AA-3984-01 5 32394556 32394556 G A ZFR Intron 0.47 TCGA-AA-3984-01 5 33616038 33616038 C T ADAMTS12 Nonsense_Mutation p.W761* 0.33 TCGA-AA-3984-01 5 33643489 33643489 C A ADAMTS12 Missense_Mutation p.E522D 0.11 tolerated(0.1) probably_damaging(0.955) TCGA-AA-3984-01 5 34803824 34803824 C T RAI14 Silent p.S91S 0.09 TCGA-AA-3984-01 5 34818925 34818925 A C RAI14 Missense_Mutation p.E324D 0.29 tolerated(0.36) benign(0.015) TCGA-AA-3984-01 5 34937466 34937466 C A DNAJC21 Missense_Mutation p.F158L 0.08 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 5 34998837 34998837 C A AGXT2 Missense_Mutation p.R511I 0.32 deleterious(0) benign(0.418) TCGA-AA-3984-01 5 35037070 35037070 C T AGXT2 Missense_Mutation p.A155T 0.37 tolerated(0.07) benign(0.313) TCGA-AA-3984-01 5 35037080 35037080 C A AGXT2 Missense_Mutation p.E151D 0.29 deleterious(0.03) benign(0.12) TCGA-AA-3984-01 5 35654679 35654679 A G SPEF2 Missense_Mutation p.T277A 0.28 tolerated(0.41) probably_damaging(0.989) TCGA-AA-3984-01 5 35806920 35806920 G T SPEF2 Nonsense_Mutation p.E1708* 0.25 TCGA-AA-3984-01 5 35876451 35876451 C A IL7R Missense_Mutation p.L415M 0.17 tolerated(0.16) benign(0.2) TCGA-AA-3984-01 5 35957312 35957312 C T UGT3A1 Nonsense_Mutation p.W351* 0.28 TCGA-AA-3984-01 5 36035971 36035971 G A UGT3A2 Silent p.G467G 0.10 TCGA-AA-3984-01 5 36249559 36249559 C A RANBP3L 3'UTR 0.43 TCGA-AA-3984-01 5 36257060 36257060 C A RANBP3L Nonsense_Mutation p.E321* 0.08 TCGA-AA-3984-01 5 36257596 36257596 G T RANBP3L Missense_Mutation p.F269L 0.29 tolerated(0.35) benign(0.039) TCGA-AA-3984-01 5 36260940 36260940 G T RANBP3L Missense_Mutation p.S229Y 0.24 tolerated(1) benign(0.27) TCGA-AA-3984-01 5 37024792 37024792 C T NIPBL Missense_Mutation p.R1894C 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 5 37164388 37164388 G A C5orf42 Silent p.F2525F 0.26 TCGA-AA-3984-01 5 37176016 37176016 A C C5orf42 Missense_Mutation p.I1991M 0.36 tolerated(0.18) benign(0.073) TCGA-AA-3984-01 5 37185098 37185098 T G C5orf42 Missense_Mutation p.N1425H 0.29 deleterious(0) probably_damaging(0.933) TCGA-AA-3984-01 5 37201820 37201820 G A C5orf42 Missense_Mutation p.S1127L 0.24 deleterious(0) probably_damaging(0.97) TCGA-AA-3984-01 5 37227679 37227679 T G C5orf42 Silent p.I454I 0.26 TCGA-AA-3984-01 5 37244606 37244606 C A C5orf42 Missense_Mutation p.K147N 0.12 deleterious(0.01) possibly_damaging(0.687) TCGA-AA-3984-01 5 37816206 37816206 G A GDNF Silent p.F78F 0.11 TCGA-AA-3984-01 5 38407080 38407080 C T EGFLAM Missense_Mutation p.P327S 0.10 tolerated(0.15) benign(0.006) TCGA-AA-3984-01 5 38530697 38530697 T G LIFR Missense_Mutation p.K18T 0.35 tolerated_low_confidence(0.08) benign(0.007) TCGA-AA-3984-01 5 38884201 38884201 C A OSMR Missense_Mutation p.L231I 0.08 tolerated(0.1) benign(0.327) TCGA-AA-3984-01 5 38918980 38918980 C A OSMR Missense_Mutation p.F467L 0.26 tolerated(0.25) benign(0.03) TCGA-AA-3984-01 5 38962629 38962629 C A RICTOR Missense_Mutation p.E542D 0.30 tolerated(0.75) possibly_damaging(0.624) TCGA-AA-3984-01 5 39153677 39153677 T G FYB Missense_Mutation p.T399P 0.30 tolerated(0.42) possibly_damaging(0.828) TCGA-AA-3984-01 5 39316047 39316047 T G C9 Missense_Mutation p.N234H 0.24 tolerated(0.35) benign(0.009) TCGA-AA-3984-01 5 40853490 40853490 A C CARD6 Silent p.R686R 0.22 TCGA-AA-3984-01 5 40999860 40999860 G T MROH2B Missense_Mutation p.L1502M 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-AA-3984-01 5 41004622 41004622 T C MROH2B Silent p.K1340K 0.19 TCGA-AA-3984-01 5 41017997 41017997 G A MROH2B Missense_Mutation p.R947C 0.32 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 5 41149503 41149503 C A C6 Missense_Mutation p.E821D 0.08 tolerated(0.29) benign(0.336) TCGA-AA-3984-01 5 41176592 41176592 C A C6 Nonsense_Mutation p.E385* 0.09 TCGA-AA-3984-01 5 41927139 41927139 T C FBXO4 Missense_Mutation p.S72P 0.29 deleterious(0) probably_damaging(0.966) TCGA-AA-3984-01 5 42719397 42719397 C T GHR Silent p.T596T 0.37 TCGA-AA-3984-01 5 43280635 43280635 G A NIM1K Missense_Mutation p.R372Q 0.30 tolerated(1) benign(0.004) TCGA-AA-3984-01 5 45262822 45262822 A C HCN1 Missense_Mutation p.I625S 0.34 deleterious(0) benign(0.261) TCGA-AA-3984-01 5 45267196 45267196 C T HCN1 Missense_Mutation p.R593Q 0.32 deleterious(0.02) probably_damaging(0.925) TCGA-AA-3984-01 5 45303896 45303896 A C HCN1 Missense_Mutation p.L475V 0.24 deleterious(0) probably_damaging(0.949) TCGA-AA-3984-01 5 5209335 5209335 G T ADAMTS16 Missense_Mutation p.K527N 0.20 deleterious(0) probably_damaging(0.98) TCGA-AA-3984-01 5 52218661 52218661 G A ITGA1 Missense_Mutation p.D783N 0.29 tolerated(0.58) benign(0.26) TCGA-AA-3984-01 5 52229817 52229817 C T ITGA1 Silent p.I985I 0.12 TCGA-AA-3984-01 5 5239964 5239964 G A ADAMTS16 Missense_Mutation p.D817N 0.17 tolerated(0.27) benign(0.021) TCGA-AA-3984-01 5 53752205 53752205 G T HSPB3 3'UTR 0.26 TCGA-AA-3984-01 5 53815262 53815262 G A SNX18 Missense_Mutation p.A494T 0.36 tolerated(0.62) benign(0.369) TCGA-AA-3984-01 5 53815718 53815718 G A SNX18 3'UTR 0.17 TCGA-AA-3984-01 5 53816686 53816686 A C SNX18 3'UTR 0.27 TCGA-AA-3984-01 5 54327310 54327310 C A GZMK Nonsense_Mutation p.S161* 0.34 TCGA-AA-3984-01 5 54456125 54456125 A G GPX8 Silent p.L35L 0.35 TCGA-AA-3984-01 5 54603958 54603958 G C SKIV2L2 Silent p.G39G 0.27 TCGA-AA-3984-01 5 5463259 5463259 A C KIAA0947 Missense_Mutation p.Q1271P 0.24 tolerated(0.14) possibly_damaging(0.854) TCGA-AA-3984-01 5 54945045 54945045 A C SLC38A9 Missense_Mutation p.F350L 0.15 tolerated(0.26) benign(0.051) TCGA-AA-3984-01 5 55111171 55111171 G A DDX4 Missense_Mutation p.E673K 0.27 deleterious(0.03) benign(0.076) TCGA-AA-3984-01 5 55395960 55395960 A C ANKRD55 3'UTR 0.25 TCGA-AA-3984-01 5 56219166 56219166 C A MIER3 Missense_Mutation p.R480I 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 56532954 56532954 A G GPBP1 Intron 0.35 TCGA-AA-3984-01 5 56778419 56778419 G T ACTBL2 Missense_Mutation p.P39H 0.27 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-AA-3984-01 5 56778601 56778601 G T ACTBL2 5'UTR 0.10 TCGA-AA-3984-01 5 57752402 57752402 C A PLK2 Nonsense_Mutation p.E391* 0.23 TCGA-AA-3984-01 5 58489341 58489341 C A PDE4D Silent p.V223V 0.22 TCGA-AA-3984-01 5 61658280 61658280 G A KIF2A Missense_Mutation p.R344Q 0.07 tolerated(0.55) benign(0.091) TCGA-AA-3984-01 5 61876065 61876065 T C LRRC70 Missense_Mutation p.V267A 0.23 deleterious(0) benign(0.205) TCGA-AA-3984-01 5 61876132 61876132 G T LRRC70 Missense_Mutation p.E289D 0.27 tolerated(0.12) benign(0.185) TCGA-AA-3984-01 5 61876377 61876377 G A LRRC70 Missense_Mutation p.R371Q 0.25 tolerated(0.33) benign(0.028) TCGA-AA-3984-01 5 63256804 63256804 G A HTR1A Missense_Mutation p.P248L 0.22 tolerated(0.63) benign(0.001) TCGA-AA-3984-01 5 63257428 63257428 G T HTR1A Missense_Mutation p.S40Y 0.09 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 5 63507988 63507988 G T RNF180 Splice_Site p.X77_splice 0.21 TCGA-AA-3984-01 5 63509596 63509596 A G RNF180 Missense_Mutation p.D148G 0.29 tolerated(0.09) benign(0.061) TCGA-AA-3984-01 5 64100179 64100179 G A CWC27 Missense_Mutation p.E302K 0.09 tolerated(0.49) benign(0) TCGA-AA-3984-01 5 64595871 64595871 C T ADAMTS6 Silent p.A437A 0.14 TCGA-AA-3984-01 5 64886077 64886077 C T TRIM23 3'UTR 0.23 TCGA-AA-3984-01 5 64893000 64893000 C T TRIM23 Missense_Mutation p.R396Q 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 5 64905248 64905248 C T TRIM23 Missense_Mutation p.R289Q 0.18 tolerated(0.07) benign(0.054) TCGA-AA-3984-01 5 64910017 64910017 T G TRIM23 Missense_Mutation p.N92H 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 5 65321692 65321692 G T ERBB2IP Nonsense_Mutation p.E303* 0.10 TCGA-AA-3984-01 5 65349675 65349675 T C ERBB2IP Silent p.C843C 0.28 TCGA-AA-3984-01 5 65350112 65350112 A G ERBB2IP Missense_Mutation p.D989G 0.08 deleterious(0) possibly_damaging(0.574) TCGA-AA-3984-01 5 6620243 6620243 C T NSUN2 Missense_Mutation p.R264Q 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 5 66426118 66426118 G A MAST4 Missense_Mutation p.R609Q 0.11 probably_damaging(0.997) TCGA-AA-3984-01 5 66479600 66479600 C A CD180 Missense_Mutation p.K357N 0.36 tolerated(0.18) benign(0.027) TCGA-AA-3984-01 5 67522657 67522657 G T PIK3R1 Nonsense_Mutation p.E52* 0.26 TCGA-AA-3984-01 5 68680732 68680732 G T RAD17 Missense_Mutation p.R217I 0.11 tolerated(0.1) benign(0.102) TCGA-AA-3984-01 5 70671832 70671832 G T RP11-136K7.2 Intron 0.11 TCGA-AA-3984-01 5 70766270 70766270 C A BDP1 Missense_Mutation p.S323Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 70805959 70805959 G A BDP1 Missense_Mutation p.A1014T 0.26 tolerated(0.12) benign(0.2) TCGA-AA-3984-01 5 71491487 71491487 G A MAP1B Missense_Mutation p.D769N 0.08 unknown(0) TCGA-AA-3984-01 5 71495320 71495320 G T MAP1B Missense_Mutation p.E2046D 0.26 benign(0.039) TCGA-AA-3984-01 5 71616055 71616055 G A MRPS27 5'UTR 0.24 TCGA-AA-3984-01 5 71756407 71756407 G A ZNF366 Missense_Mutation p.T306M 0.31 tolerated(0.17) benign(0.056) TCGA-AA-3984-01 5 72161492 72161492 C T TNPO1 Missense_Mutation p.R178C 0.20 deleterious(0.03) benign(0.009) TCGA-AA-3984-01 5 72192904 72192904 T G TNPO1 Missense_Mutation p.I755S 0.28 deleterious(0.04) benign(0.383) TCGA-AA-3984-01 5 72469446 72469446 A C TMEM174 Missense_Mutation p.N126H 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 72858504 72858504 A C ANKRA2 Missense_Mutation p.F68C 0.19 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-3984-01 5 73153964 73153964 C T ARHGEF28 Missense_Mutation p.A656V 0.27 tolerated(1) benign(0.002) TCGA-AA-3984-01 5 73205441 73205441 C T ARHGEF28 Missense_Mutation p.R1456C 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 74046426 74046426 A C GFM2 Missense_Mutation p.F166C 0.28 deleterious(0) probably_damaging(0.98) TCGA-AA-3984-01 5 74324764 74324764 G A GCNT4 Missense_Mutation p.R367C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 5 74325068 74325068 G T GCNT4 Missense_Mutation p.F265L 0.27 deleterious(0.02) probably_damaging(0.988) TCGA-AA-3984-01 5 75008688 75008688 C T POC5 Silent p.S25S 0.32 TCGA-AA-3984-01 5 75587594 75587594 T G SV2C Missense_Mutation p.I417S 0.26 deleterious(0) possibly_damaging(0.481) TCGA-AA-3984-01 5 75893322 75893322 G A IQGAP2 Silent p.T322T 0.33 TCGA-AA-3984-01 5 75913655 75913655 C T F2RL2 Missense_Mutation p.D293N 0.11 tolerated(0.27) benign(0.111) TCGA-AA-3984-01 5 75969815 75969815 C T IQGAP2 Missense_Mutation p.S1083L 0.15 deleterious(0.05) possibly_damaging(0.573) TCGA-AA-3984-01 5 75973141 75973141 A G IQGAP2 Missense_Mutation p.Y1209C 0.08 deleterious(0) possibly_damaging(0.792) TCGA-AA-3984-01 5 75993832 75993832 C A IQGAP2 Silent p.I1409I 0.09 TCGA-AA-3984-01 5 76173747 76173747 T C S100Z Intron 0.32 TCGA-AA-3984-01 5 76331710 76331710 A C AGGF1 Intron 0.33 TCGA-AA-3984-01 5 76624876 76624876 C T PDE8B Missense_Mutation p.S215L 0.19 tolerated(0.07) benign(0.426) TCGA-AA-3984-01 5 76717689 76717689 T C PDE8B Missense_Mutation p.F765S 0.09 tolerated(0.36) benign(0.006) TCGA-AA-3984-01 5 76934359 76934359 C T OTP Missense_Mutation p.D6N 0.11 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AA-3984-01 5 77755079 77755079 C A SCAMP1 Nonsense_Mutation p.S249* 0.30 TCGA-AA-3984-01 5 78251316 78251316 G T ARSB Missense_Mutation p.L234I 0.37 tolerated(0.13) probably_damaging(0.955) TCGA-AA-3984-01 5 78378752 78378752 G T BHMT2 Nonsense_Mutation p.E191* 0.21 TCGA-AA-3984-01 5 78384434 78384435 - A BHMT2 3'UTR 0.18 TCGA-AA-3984-01 5 7861699 7861699 T G FASTKD3 Missense_Mutation p.K589T 0.27 deleterious(0.04) benign(0.028) TCGA-AA-3984-01 5 7867936 7867936 G A FASTKD3 Silent p.C87C 0.11 TCGA-AA-3984-01 5 78746816 78746816 C T HOMER1 Silent p.S97S 0.26 TCGA-AA-3984-01 5 79025190 79025190 C A CMYA5 Missense_Mutation p.T201K 0.09 possibly_damaging(0.788) TCGA-AA-3984-01 5 79025560 79025560 G T CMYA5 Missense_Mutation p.K324N 0.08 possibly_damaging(0.788) TCGA-AA-3984-01 5 79026724 79026724 G T CMYA5 Missense_Mutation p.K712N 0.12 benign(0.032) TCGA-AA-3984-01 5 79027027 79027027 G T CMYA5 Missense_Mutation p.K813N 0.25 possibly_damaging(0.878) TCGA-AA-3984-01 5 79028707 79028707 C T CMYA5 Silent p.I1373I 0.17 TCGA-AA-3984-01 5 79030778 79030778 A G CMYA5 Missense_Mutation p.T2064A 0.31 probably_damaging(0.935) TCGA-AA-3984-01 5 79033806 79033806 C A CMYA5 Missense_Mutation p.P3073Q 0.25 benign(0.032) TCGA-AA-3984-01 5 79095480 79095480 T C CMYA5 3'UTR 0.29 TCGA-AA-3984-01 5 79286057 79286057 C T MTX3 Intron 0.28 TCGA-AA-3984-01 5 79366897 79366897 C A THBS4 Silent p.I538I 0.19 TCGA-AA-3984-01 5 79374913 79374913 C T THBS4 Silent p.F781F 0.26 TCGA-AA-3984-01 5 79378955 79378955 C T THBS4 Silent p.F959F 0.31 TCGA-AA-3984-01 5 79616266 79616266 G T SPZ1 Missense_Mutation p.D78Y 0.26 deleterious(0.01) probably_damaging(0.935) TCGA-AA-3984-01 5 79733718 79733718 A C ZFYVE16 Missense_Mutation p.D405A 0.34 deleterious(0.02) possibly_damaging(0.871) TCGA-AA-3984-01 5 79734197 79734197 G T ZFYVE16 Missense_Mutation p.D565Y 0.29 deleterious(0.02) possibly_damaging(0.58) TCGA-AA-3984-01 5 79741096 79741096 G T ZFYVE16 Nonsense_Mutation p.E866* 0.11 TCGA-AA-3984-01 5 79961030 79961030 G A MSH3 Missense_Mutation p.D143N 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.495) TCGA-AA-3984-01 5 80363883 80363883 T C RASGRF2 Missense_Mutation p.L143S 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 5 80631713 80631713 A C ACOT12 Missense_Mutation p.I379R 0.10 deleterious(0.03) possibly_damaging(0.882) TCGA-AA-3984-01 5 82786055 82786055 A G VCAN Missense_Mutation p.E70G 0.25 deleterious(0) probably_damaging(0.975) TCGA-AA-3984-01 5 82817499 82817499 G A VCAN Missense_Mutation p.R1125H 0.29 deleterious(0.01) benign(0.179) TCGA-AA-3984-01 5 82835349 82835349 C A VCAN Missense_Mutation p.S2176Y 0.26 deleterious(0.01) possibly_damaging(0.643) TCGA-AA-3984-01 5 83360553 83360553 A C EDIL3 Silent p.T306T 0.25 TCGA-AA-3984-01 5 86681183 86681183 A C RASA1 Missense_Mutation p.N942H 0.23 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 5 878568 878568 C T BRD9 Silent p.S391S 0.27 TCGA-AA-3984-01 5 88047844 88047844 T C MEF2C Missense_Mutation p.N158S 0.35 tolerated(0.17) benign(0.012) TCGA-AA-3984-01 5 88056812 88056812 T G MEF2C Missense_Mutation p.K150T 0.27 tolerated(0.09) possibly_damaging(0.5) TCGA-AA-3984-01 5 89815202 89815202 C T LYSMD3 Missense_Mutation p.E119K 0.10 deleterious(0) probably_damaging(0.935) TCGA-AA-3984-01 5 89985777 89985777 T G GPR98 Missense_Mutation p.L2197R 0.17 probably_damaging(0.973) TCGA-AA-3984-01 5 89989865 89989865 C T GPR98 Missense_Mutation p.A2431V 0.22 benign(0) TCGA-AA-3984-01 5 90024624 90024624 T G GPR98 Missense_Mutation p.L3434V 0.29 possibly_damaging(0.874) TCGA-AA-3984-01 5 90106402 90106402 T C GPR98 Missense_Mutation p.W5109R 0.22 benign(0.117) TCGA-AA-3984-01 5 90136476 90136476 A G GPR98 Missense_Mutation p.T5565A 0.22 possibly_damaging(0.636) TCGA-AA-3984-01 5 90678773 90678773 G T ARRDC3 Missense_Mutation p.S46Y 0.25 deleterious(0) probably_damaging(0.934) TCGA-AA-3984-01 5 93856178 93856178 G T KIAA0825 Missense_Mutation p.L249I 0.23 tolerated(0.34) possibly_damaging(0.56) TCGA-AA-3984-01 5 93856440 93856440 C A KIAA0825 Missense_Mutation p.W161C 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 5 94756012 94756012 C T FAM81B Nonsense_Mutation p.R188* 0.21 TCGA-AA-3984-01 5 94814006 94814006 T G TTC37 Missense_Mutation p.L1451F 0.27 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 5 95072624 95072624 G A RHOBTB3 Missense_Mutation p.R87Q 0.33 tolerated(0.11) benign(0.159) TCGA-AA-3984-01 5 95091242 95091242 C T RHOBTB3 Silent p.C275C 0.28 TCGA-AA-3984-01 5 95735873 95735873 C T PCSK1 Missense_Mutation p.R405Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 5 96249124 96249124 G A ERAP2 Missense_Mutation p.D874N 0.27 tolerated(0.77) benign(0.005) TCGA-AA-3984-01 5 9629596 9629596 G T TAS2R1 Missense_Mutation p.F183L 0.31 tolerated(1) benign(0.001) TCGA-AA-3984-01 5 96350740 96350740 G A LNPEP Missense_Mutation p.D773N 0.32 tolerated(0.5) benign(0.001) TCGA-AA-3984-01 6 100056633 100056633 G A PRDM13 Missense_Mutation p.G54E 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 6 100368704 100368704 G A MCHR2 3'UTR 0.30 TCGA-AA-3984-01 6 100868696 100868696 C A SIM1 Missense_Mutation p.K379N 0.25 deleterious(0) possibly_damaging(0.903) TCGA-AA-3984-01 6 100911201 100911201 G A SIM1 Silent p.S48S 0.08 TCGA-AA-3984-01 6 101075830 101075830 A G ASCC3 Missense_Mutation p.V1470A 0.42 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 6 101094534 101094534 C T ASCC3 Missense_Mutation p.R1197Q 0.18 deleterious(0.04) probably_damaging(0.937) TCGA-AA-3984-01 6 101173559 101173559 T G ASCC3 Missense_Mutation p.E586D 0.14 deleterious(0) possibly_damaging(0.898) TCGA-AA-3984-01 6 101847196 101847196 C T GRIK2 Missense_Mutation p.R15C 0.16 tolerated(0.22) benign(0) TCGA-AA-3984-01 6 102069890 102069890 T C GRIK2 Missense_Mutation p.V61A 0.09 tolerated(0.17) benign(0.013) TCGA-AA-3984-01 6 102247617 102247617 G A GRIK2 Missense_Mutation p.R349Q 0.11 tolerated(0.28) probably_damaging(0.995) TCGA-AA-3984-01 6 102516454 102516454 C T GRIK2 3'UTR 0.18 TCGA-AA-3984-01 6 10529601 10529601 G A GCNT2 Missense_Mutation p.A153T 0.31 deleterious(0.03) possibly_damaging(0.708) TCGA-AA-3984-01 6 105564651 105564651 T G BVES Missense_Mutation p.E247D 0.27 tolerated(0.1) probably_damaging(0.987) TCGA-AA-3984-01 6 10556744 10556744 G A GCNT2 Intron 0.22 TCGA-AA-3984-01 6 105595235 105595235 C A BVES-AS1 RNA 0.25 TCGA-AA-3984-01 6 105606457 105606457 C T POPDC3 Missense_Mutation p.R255K 0.38 deleterious(0.03) benign(0.001) TCGA-AA-3984-01 6 105606592 105606592 A G POPDC3 Missense_Mutation p.V210A 0.18 deleterious(0) possibly_damaging(0.876) TCGA-AA-3984-01 6 10586945 10586945 C T GCNT2 Intron 0.25 TCGA-AA-3984-01 6 106973037 106973037 C A AIM1 Silent p.L1017L 0.17 TCGA-AA-3984-01 6 10702868 10702868 T G PAK1IP1 Missense_Mutation p.L147V 0.14 deleterious(0) possibly_damaging(0.896) TCGA-AA-3984-01 6 107100203 107100203 C T QRSL1 Missense_Mutation p.S226L 0.25 deleterious(0.02) benign(0.44) TCGA-AA-3984-01 6 107908371 107908371 G A SOBP Missense_Mutation p.E221K 0.10 deleterious(0.02) possibly_damaging(0.569) TCGA-AA-3984-01 6 108068007 108068007 C T SCML4 Missense_Mutation p.E125K 0.19 tolerated(0.1) possibly_damaging(0.874) TCGA-AA-3984-01 6 10831022 10831022 A C MAK 5'UTR 0.29 TCGA-AA-3984-01 6 108502092 108502092 G A NR2E1 Missense_Mutation p.R274Q 0.15 tolerated(0.16) possibly_damaging(0.518) TCGA-AA-3984-01 6 108616301 108616301 G A LACE1 Silent p.S6S 0.09 TCGA-AA-3984-01 6 10874992 10874992 C A GCM2 Missense_Mutation p.D253Y 0.22 deleterious(0) possibly_damaging(0.659) TCGA-AA-3984-01 6 10877554 10877554 C T GCM2 Silent p.E54E 0.21 TCGA-AA-3984-01 6 108840922 108840922 C T LACE1 Missense_Mutation p.S409L 0.12 tolerated(0.18) benign(0.003) TCGA-AA-3984-01 6 108843515 108843515 C T LACE1 Missense_Mutation p.L445F 0.21 deleterious(0.03) benign(0.168) TCGA-AA-3984-01 6 10894415 10894415 T G SYCP2L Missense_Mutation p.I105S 0.26 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 6 109294565 109294565 G A ARMC2 Missense_Mutation p.E818K 0.07 tolerated(0.07) possibly_damaging(0.477) TCGA-AA-3984-01 6 10930629 10930629 C A SYCP2L Missense_Mutation p.F505L 0.21 tolerated(0.05) benign(0.041) TCGA-AA-3984-01 6 109762562 109762562 G A SMPD2 Missense_Mutation p.G18D 0.31 tolerated(0.3) possibly_damaging(0.658) TCGA-AA-3984-01 6 109766481 109766481 G A MICAL1 Nonsense_Mutation p.R934* 0.09 TCGA-AA-3984-01 6 109803010 109803010 G A ZBTB24 Nonsense_Mutation p.Q74* 0.11 TCGA-AA-3984-01 6 109854609 109854609 G A AK9 Missense_Mutation p.R1139C 0.07 deleterious(0) benign(0.018) TCGA-AA-3984-01 6 109886008 109886008 G A AK9 Silent p.I795I 0.26 TCGA-AA-3984-01 6 11005684 11005684 C A ELOVL2 Missense_Mutation p.R59I 0.23 deleterious(0.01) possibly_damaging(0.791) TCGA-AA-3984-01 6 110550122 110550122 T G CDC40 Missense_Mutation p.F502C 0.25 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 6 110567228 110567228 G T METTL24 Missense_Mutation p.P341H 0.20 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 110763471 110763471 C T SLC22A16 Missense_Mutation p.E387K 0.26 tolerated(0.1) possibly_damaging(0.474) TCGA-AA-3984-01 6 11104869 11104869 C T ERVFRD-1 Silent p.A225A 0.16 TCGA-AA-3984-01 6 111337050 111337050 G A RPF2 Missense_Mutation p.R196Q 0.08 deleterious(0.02) possibly_damaging(0.84) TCGA-AA-3984-01 6 112025268 112025268 G A FYN Nonsense_Mutation p.R161* 0.13 TCGA-AA-3984-01 6 112441652 112441652 C A LAMA4 Missense_Mutation p.R1500I 0.10 deleterious(0) benign(0.074) TCGA-AA-3984-01 6 112443364 112443364 G A LAMA4 Missense_Mutation p.A1443V 0.24 deleterious(0.03) benign(0.017) TCGA-AA-3984-01 6 112512941 112512941 G T LAMA4 Silent p.V205V 0.16 TCGA-AA-3984-01 6 114378448 114378448 G T HS3ST5 Silent p.I338I 0.18 TCGA-AA-3984-01 6 114378953 114378953 T C HS3ST5 Missense_Mutation p.Y170C 0.24 tolerated(0.14) benign(0.041) TCGA-AA-3984-01 6 11575684 11575684 T C TMEM170B Missense_Mutation p.Y97H 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-AA-3984-01 6 116277766 116277766 C A FRK Missense_Mutation p.M269I 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-AA-3984-01 6 116289833 116289833 C T FRK Missense_Mutation p.R179Q 0.24 tolerated(0.39) benign(0.081) TCGA-AA-3984-01 6 116574721 116574721 C T TSPYL4 Missense_Mutation p.E151K 0.26 tolerated(0.1) benign(0.059) TCGA-AA-3984-01 6 116756758 116756758 G A DSE Missense_Mutation p.G376D 0.26 deleterious(0.01) benign(0.09) TCGA-AA-3984-01 6 116756770 116756770 C T DSE Missense_Mutation p.S380L 0.07 deleterious(0.02) benign(0.021) TCGA-AA-3984-01 6 116757460 116757460 G T DSE Missense_Mutation p.R610I 0.10 tolerated(0.21) benign(0.26) TCGA-AA-3984-01 6 116784662 116784662 G T FAM26F Nonsense_Mutation p.E248* 0.21 TCGA-AA-3984-01 6 116948877 116948877 G A RSPH4A Missense_Mutation p.R336H 0.17 tolerated(0.1) possibly_damaging(0.48) TCGA-AA-3984-01 6 116951693 116951693 G A RSPH4A Missense_Mutation p.A632T 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 117114077 117114077 A C GPRC6A Missense_Mutation p.F670C 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 6 117715350 117715350 C A ROS1 Missense_Mutation p.R380I 0.15 deleterious(0) probably_damaging(0.914) TCGA-AA-3984-01 6 117715866 117715866 T A ROS1 Nonsense_Mutation p.K298* 0.10 TCGA-AA-3984-01 6 117853502 117853502 G A DCBLD1 Missense_Mutation p.R222H 0.06 tolerated(0.52) possibly_damaging(0.715) TCGA-AA-3984-01 6 117860425 117860425 G A DCBLD1 Silent p.R328R 0.20 TCGA-AA-3984-01 6 117884377 117884377 A C GOPC 3'UTR 0.29 TCGA-AA-3984-01 6 117888135 117888135 G A GOPC Silent p.N380N 0.46 TCGA-AA-3984-01 6 118014217 118014217 G T NUS1 Missense_Mutation p.R143I 0.11 deleterious(0) probably_damaging(0.958) TCGA-AA-3984-01 6 118596709 118596709 G A SLC35F1 Missense_Mutation p.R242Q 0.18 deleterious(0) benign(0.067) TCGA-AA-3984-01 6 118802970 118802970 C A CEP85L Nonsense_Mutation p.E576* 0.12 TCGA-AA-3984-01 6 119136201 119136201 G A MCM9 Missense_Mutation p.S1073F 0.08 deleterious_low_confidence(0.03) benign(0.185) TCGA-AA-3984-01 6 119301410 119301410 C T FAM184A Missense_Mutation p.E732K 0.16 tolerated(0.06) probably_damaging(0.976) TCGA-AA-3984-01 6 119341146 119341146 C T FAM184A Silent p.E443E 0.22 TCGA-AA-3984-01 6 12124149 12124149 C T HIVEP1 Missense_Mutation p.T1374M 0.21 tolerated(0.45) benign(0.017) TCGA-AA-3984-01 6 121482170 121482170 C A TBC1D32 Missense_Mutation p.R868I 0.25 deleterious(0) probably_damaging(0.929) TCGA-AA-3984-01 6 121562685 121562685 T G TBC1D32 Missense_Mutation p.K724T 0.17 deleterious(0) benign(0.007) TCGA-AA-3984-01 6 121768327 121768327 G A GJA1 Missense_Mutation p.E112K 0.20 tolerated(0.22) benign(0.007) TCGA-AA-3984-01 6 12292730 12292730 T G EDN1 Missense_Mutation p.V74G 0.17 deleterious(0) probably_damaging(0.986) TCGA-AA-3984-01 6 123102460 123102460 A G FABP7 Intron 0.14 TCGA-AA-3984-01 6 123591006 123591006 G A TRDN Missense_Mutation p.P576S 0.26 tolerated_low_confidence(0.11) probably_damaging(0.979) TCGA-AA-3984-01 6 126359850 126359850 G T TRMT11 Splice_Site p.X421_splice 0.09 TCGA-AA-3984-01 6 126667382 126667382 G A CENPW Missense_Mutation p.R53Q 0.09 deleterious(0.03) benign(0.33) TCGA-AA-3984-01 6 127901473 127901473 T C C6orf58 Missense_Mutation p.I151T 0.23 tolerated(0.13) possibly_damaging(0.528) TCGA-AA-3984-01 6 129649444 129649444 C T LAMA2 Nonsense_Mutation p.R1400* 0.15 TCGA-AA-3984-01 6 129691105 129691105 C T LAMA2 Silent p.L1643L 0.18 TCGA-AA-3984-01 6 129837474 129837474 A G LAMA2 Silent p.V3117V 0.24 TCGA-AA-3984-01 6 129963104 129963104 T G ARHGAP18 Missense_Mutation p.K58T 0.08 tolerated(0.28) benign(0.003) TCGA-AA-3984-01 6 130372527 130372527 G A L3MBTL3 Silent p.Q141Q 0.21 TCGA-AA-3984-01 6 130763342 130763342 C A TMEM200A 3'UTR 0.18 TCGA-AA-3984-01 6 131277508 131277508 C T EPB41L2 Missense_Mutation p.D40N 0.09 tolerated(0.21) benign(0.002) TCGA-AA-3984-01 6 131908152 131908152 G T MED23 3'UTR 0.19 TCGA-AA-3984-01 6 131949313 131949313 C T MED23 5'UTR 0.40 TCGA-AA-3984-01 6 132168930 132168930 T C ENPP1 Silent p.C85C 0.30 TCGA-AA-3984-01 6 132190558 132190558 A C ENPP1 Missense_Mutation p.K445T 0.37 deleterious(0.04) benign(0.034) TCGA-AA-3984-01 6 132271172 132271172 C A CTGF Missense_Mutation p.D224Y 0.11 deleterious(0.01) probably_damaging(0.977) TCGA-AA-3984-01 6 132649655 132649655 C T MOXD1 Missense_Mutation p.D248N 0.12 tolerated(0.18) possibly_damaging(0.853) TCGA-AA-3984-01 6 132793477 132793477 C A STX7 Nonsense_Mutation p.E65* 0.28 TCGA-AA-3984-01 6 132859791 132859791 T C TAAR9 Silent p.F121F 0.26 TCGA-AA-3984-01 6 132891886 132891886 C A TAAR6 Silent p.T142T 0.20 TCGA-AA-3984-01 6 132966836 132966836 C T TAAR1 Missense_Mutation p.D103N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 6 133836518 133836518 C A EYA4 Missense_Mutation p.L521M 0.15 tolerated(0.06) probably_damaging(1) TCGA-AA-3984-01 6 133850013 133850013 C T EYA4 3'UTR 0.27 TCGA-AA-3984-01 6 134312433 134312433 T G SLC2A12 Missense_Mutation p.N572H 0.19 tolerated(0.26) benign(0.004) TCGA-AA-3984-01 6 134492161 134492161 G A SGK1 Silent p.F441F 0.52 TCGA-AA-3984-01 6 135271141 135271141 T G ALDH8A1 Missense_Mutation p.K17N 0.07 tolerated(0.05) benign(0.13) TCGA-AA-3984-01 6 135358103 135358103 T G HBS1L Intron 0.13 TCGA-AA-3984-01 6 135518401 135518401 C T MYB Silent p.D502D 0.20 TCGA-AA-3984-01 6 135763781 135763781 G T AHI1 Missense_Mutation p.F617L 0.09 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 6 13622475 13622475 C T RANBP9 3'UTR 0.43 TCGA-AA-3984-01 6 13622657 13622657 T C RANBP9 Silent p.G709G 0.30 TCGA-AA-3984-01 6 136429935 136429935 A G PDE7B Missense_Mutation p.D50G 0.24 deleterious(0.01) benign(0.437) TCGA-AA-3984-01 6 136597592 136597592 A G BCLAF1 Silent p.D357D 0.09 TCGA-AA-3984-01 6 136710619 136710619 C T MAP7 Missense_Mutation p.R116Q 0.25 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 6 137018398 137018398 C A MAP3K5 Missense_Mutation p.D312Y 0.24 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 6 137112895 137112895 T G MAP3K5 Missense_Mutation p.K134T 0.25 tolerated(0.7) possibly_damaging(0.494) TCGA-AA-3984-01 6 137245417 137245417 G A SLC35D3 Silent p.E278E 0.20 TCGA-AA-3984-01 6 138726319 138726319 A G HEBP2 Missense_Mutation p.K47R 0.19 tolerated(0.12) benign(0.15) TCGA-AA-3984-01 6 138752915 138752915 G A NHSL1 Missense_Mutation p.S860L 0.14 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 6 139109519 139109519 C T CCDC28A Missense_Mutation p.S255F 0.08 tolerated(0.14) probably_damaging(0.913) TCGA-AA-3984-01 6 139134339 139134339 A G ECT2L 5'UTR 0.30 TCGA-AA-3984-01 6 139164148 139164148 C T ECT2L Silent p.F125F 0.08 TCGA-AA-3984-01 6 139262540 139262540 C T REPS1 Missense_Mutation p.G356D 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 139363958 139363958 G A ABRACL Missense_Mutation p.R55Q 0.08 tolerated(0.07) benign(0.213) TCGA-AA-3984-01 6 1394981 1394981 G T FOXF2 Missense_Mutation p.D408Y 0.22 tolerated(0.06) possibly_damaging(0.488) TCGA-AA-3984-01 6 13979696 13979696 A G RNF182 3'UTR 0.20 TCGA-AA-3984-01 6 13979930 13979931 - A RNF182 3'UTR 0.13 TCGA-AA-3984-01 6 14131843 14131843 C T CD83 Silent p.F82F 0.12 TCGA-AA-3984-01 6 142711440 142711440 G A GPR126 Missense_Mutation p.R423H 0.26 tolerated(0.21) benign(0.001) TCGA-AA-3984-01 6 142723884 142723884 T C GPR126 Silent p.D624D 0.21 TCGA-AA-3984-01 6 142764662 142764662 G T GPR126 3'UTR 0.31 TCGA-AA-3984-01 6 143082678 143082678 G T HIVEP2 Missense_Mutation p.S1848Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 6 143085981 143085981 G A HIVEP2 Missense_Mutation p.R1825W 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 143092118 143092118 G A HIVEP2 Missense_Mutation p.S1253L 0.08 tolerated(0.06) benign(0.022) TCGA-AA-3984-01 6 143092433 143092433 G A HIVEP2 Missense_Mutation p.S1148L 0.18 deleterious(0.02) benign(0.033) TCGA-AA-3984-01 6 143093173 143093173 C T HIVEP2 Silent p.E901E 0.31 TCGA-AA-3984-01 6 143095019 143095019 G T HIVEP2 Missense_Mutation p.S286Y 0.19 deleterious(0.01) possibly_damaging(0.781) TCGA-AA-3984-01 6 143793349 143793349 G T PEX3 Nonsense_Mutation p.E211* 0.25 TCGA-AA-3984-01 6 143828373 143828373 C T FUCA2 Splice_Site p.X138_splice 0.22 TCGA-AA-3984-01 6 144509011 144509011 G T STX11 3'UTR 0.21 TCGA-AA-3984-01 6 144759934 144759934 C T UTRN Missense_Mutation p.A432V 0.23 deleterious(0.03) benign(0.201) TCGA-AA-3984-01 6 144768371 144768371 G A UTRN Missense_Mutation p.E547K 0.23 deleterious(0.04) benign(0.368) TCGA-AA-3984-01 6 144783942 144783942 C T UTRN Silent p.V1002V 0.20 TCGA-AA-3984-01 6 145156969 145156969 C T UTRN Missense_Mutation p.S3240F 0.18 deleterious(0) possibly_damaging(0.797) TCGA-AA-3984-01 6 146245970 146245970 G A SHPRH Nonsense_Mutation p.R1103* 0.16 TCGA-AA-3984-01 6 146248372 146248372 G A SHPRH Missense_Mutation p.R1052C 0.19 deleterious(0) probably_damaging(0.974) TCGA-AA-3984-01 6 147103239 147103239 A G ADGB Missense_Mutation p.T1316A 0.16 tolerated(0.18) benign(0.059) TCGA-AA-3984-01 6 147123938 147123938 A G ADGB Intron 0.06 TCGA-AA-3984-01 6 147635081 147635081 G A STXBP5 Missense_Mutation p.E403K 0.15 tolerated(0.21) benign(0.075) TCGA-AA-3984-01 6 149838580 149838580 T G PPIL4 Missense_Mutation p.K330T 0.09 tolerated(0.2) benign(0.343) TCGA-AA-3984-01 6 150005323 150005323 G T LATS1 Missense_Mutation p.P301H 0.19 deleterious_low_confidence(0) benign(0.376) TCGA-AA-3984-01 6 150064779 150064779 T G NUP43 Missense_Mutation p.N106H 0.13 tolerated(0.1) possibly_damaging(0.76) TCGA-AA-3984-01 6 150710506 150710506 A C IYD Missense_Mutation p.E66A 0.11 tolerated(0.48) benign(0.01) TCGA-AA-3984-01 6 151130806 151130806 G A PLEKHG1 Missense_Mutation p.R405H 0.20 deleterious(0.01) probably_damaging(0.915) TCGA-AA-3984-01 6 151161872 151161872 C T PLEKHG1 Missense_Mutation p.P1333L 0.26 deleterious(0.03) benign(0.099) TCGA-AA-3984-01 6 151258063 151258063 G A MTHFD1L Silent p.T460T 0.20 TCGA-AA-3984-01 6 151779483 151779483 G T C6orf211 Missense_Mutation p.K56N 0.17 deleterious(0) probably_damaging(0.946) TCGA-AA-3984-01 6 151869576 151869576 G A CCDC170 Silent p.E242E 0.31 TCGA-AA-3984-01 6 151907196 151907196 G A CCDC170 Missense_Mutation p.R422Q 0.14 tolerated(0.44) benign(0.263) TCGA-AA-3984-01 6 151917659 151917659 C T CCDC170 Nonsense_Mutation p.R553* 0.27 TCGA-AA-3984-01 6 151936652 151936652 G T CCDC170 Missense_Mutation p.E595D 0.17 tolerated(0.08) possibly_damaging(0.45) TCGA-AA-3984-01 6 151939315 151939315 A G CCDC170 3'UTR 0.27 TCGA-AA-3984-01 6 152477154 152477154 A C SYNE1 Missense_Mutation p.C7957G 0.15 probably_damaging(0.975) TCGA-AA-3984-01 6 152532678 152532678 T G SYNE1 Missense_Mutation p.I7514L 0.26 probably_damaging(0.974) TCGA-AA-3984-01 6 152676071 152676071 T C SYNE1 Missense_Mutation p.N3550S 0.23 benign(0.137) TCGA-AA-3984-01 6 152765634 152765634 G T SYNE1 Missense_Mutation p.S1250Y 0.24 possibly_damaging(0.498) TCGA-AA-3984-01 6 152768669 152768669 T C SYNE1 Missense_Mutation p.N1198S 0.15 benign(0.001) TCGA-AA-3984-01 6 152774743 152774743 C T SYNE1 Missense_Mutation p.R1002Q 0.21 probably_damaging(0.997) TCGA-AA-3984-01 6 152841649 152841649 C T SYNE1 Missense_Mutation p.R85Q 0.21 probably_damaging(0.999) TCGA-AA-3984-01 6 152861103 152861103 G A SYNE1 Silent p.L41L 0.13 TCGA-AA-3984-01 6 153292421 153292421 C T FBXO5 Silent p.T407T 0.23 TCGA-AA-3984-01 6 153310996 153310996 C A MTRF1L 3'UTR 0.24 TCGA-AA-3984-01 6 153311207 153311207 C A MTRF1L Missense_Mutation p.E322D 0.21 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 6 154429305 154429305 T G OPRM1 Intron 0.30 TCGA-AA-3984-01 6 154431512 154431512 C A OPRM1 Intron 0.22 TCGA-AA-3984-01 6 154567753 154567753 G A IPCEF1 Missense_Mutation p.S73L 0.10 deleterious(0) benign(0.157) TCGA-AA-3984-01 6 15520454 15520454 C A JARID2 Nonsense_Mutation p.S1238* 0.16 TCGA-AA-3984-01 6 155451393 155451393 G T TIAM2 Missense_Mutation p.A346S 0.28 tolerated(0.21) benign(0.017) TCGA-AA-3984-01 6 155469275 155469275 T G TIAM2 Missense_Mutation p.V612G 0.12 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 6 155577595 155577595 G A TIAM2 Intron 0.07 TCGA-AA-3984-01 6 157496051 157496051 C T ARID1B Intron 0.09 TCGA-AA-3984-01 6 157522424 157522424 C T ARID1B Missense_Mutation p.R1566C 0.17 probably_damaging(0.997) TCGA-AA-3984-01 6 157528133 157528133 G A ARID1B Missense_Mutation p.R1953H 0.24 probably_damaging(0.997) TCGA-AA-3984-01 6 157963759 157963759 G A ZDHHC14 Missense_Mutation p.D130N 0.21 tolerated(0.24) possibly_damaging(0.898) TCGA-AA-3984-01 6 158327172 158327172 T C SNX9 Silent p.F211F 0.25 TCGA-AA-3984-01 6 158513997 158513997 A G SYNJ2 Missense_Mutation p.D1202G 0.27 tolerated_low_confidence(0.1) benign(0.003) TCGA-AA-3984-01 6 158923081 158923081 G A TULP4 Missense_Mutation p.E796K 0.31 deleterious_low_confidence(0.03) benign(0.098) TCGA-AA-3984-01 6 159046769 159046769 C T TMEM181 Silent p.F501F 0.24 TCGA-AA-3984-01 6 159086472 159086472 G A SYTL3 Silent p.K52K 0.19 TCGA-AA-3984-01 6 159206567 159206567 G A EZR Missense_Mutation p.R81W 0.22 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 6 159653082 159653082 T C FNDC1 Missense_Mutation p.I513T 0.16 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 6 159653106 159653106 G A FNDC1 Missense_Mutation p.R521Q 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3984-01 6 160103613 160103613 T G SOD2 Missense_Mutation p.K194T 0.17 deleterious(0) probably_damaging(0.986) TCGA-AA-3984-01 6 160160025 160160025 C T WTAP Nonsense_Mutation p.R12* 0.21 TCGA-AA-3984-01 6 160200944 160200944 T G TCP1 Missense_Mutation p.N425H 0.15 deleterious(0.02) benign(0.3) TCGA-AA-3984-01 6 160205867 160205867 G T TCP1 Missense_Mutation p.F167L 0.11 tolerated(0.26) benign(0.038) TCGA-AA-3984-01 6 160241512 160241512 C T PNLDC1 Missense_Mutation p.A509V 0.40 deleterious(0.01) possibly_damaging(0.907) TCGA-AA-3984-01 6 160509121 160509121 G A IGF2R Missense_Mutation p.A2088T 0.28 tolerated(0.09) benign(0.035) TCGA-AA-3984-01 6 160511040 160511040 C T IGF2R Missense_Mutation p.A2187V 0.12 tolerated(0.13) benign(0.426) TCGA-AA-3984-01 6 160966478 160966478 G T LPA Missense_Mutation p.L1798I 0.20 tolerated(0.18) benign(0.041) TCGA-AA-3984-01 6 160977100 160977100 T C LPA Missense_Mutation p.T1644A 0.18 tolerated(0.48) probably_damaging(0.976) TCGA-AA-3984-01 6 161143500 161143500 G A PLG Missense_Mutation p.R386Q 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-AA-3984-01 6 161160210 161160210 G A PLG Missense_Mutation p.R663Q 0.21 tolerated(0.61) benign(0.086) TCGA-AA-3984-01 6 1612609 1612609 G T FOXC1 3'UTR 0.23 TCGA-AA-3984-01 6 1613103 1613103 G A FOXC1 3'UTR 0.11 TCGA-AA-3984-01 6 16145302 16145302 C T MYLIP Silent p.G334G 0.18 TCGA-AA-3984-01 6 161470088 161470088 G A MAP3K4 Missense_Mutation p.E262K 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 6 161523780 161523780 G T MAP3K4 Missense_Mutation p.W1275C 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3984-01 6 161771140 161771140 G A PARK2 Silent p.F463F 0.15 TCGA-AA-3984-01 6 16247138 16247138 C T GMPR Silent p.I51I 0.29 TCGA-AA-3984-01 6 16328379 16328379 G A ATXN1 Missense_Mutation p.H55Y 0.41 tolerated(0.05) benign(0.081) TCGA-AA-3984-01 6 163984457 163984457 C T QKI Missense_Mutation p.L214F 0.15 tolerated(0.36) benign(0.152) TCGA-AA-3984-01 6 165846488 165846488 C A PDE10A Nonsense_Mutation p.E223* 0.08 TCGA-AA-3984-01 6 166580959 166580959 C T T Missense_Mutation p.E41K 0.18 tolerated(0.07) benign(0.029) TCGA-AA-3984-01 6 166862232 166862232 C T RPS6KA2 Missense_Mutation p.D446N 0.18 tolerated(0.89) benign(0) TCGA-AA-3984-01 6 167417770 167417770 C T FGFR1OP Nonsense_Mutation p.R107* 0.15 TCGA-AA-3984-01 6 167424329 167424329 C A FGFR1OP Missense_Mutation p.S156Y 0.08 deleterious(0.04) possibly_damaging(0.568) TCGA-AA-3984-01 6 167595351 167595351 G T TCP10L2 Nonsense_Mutation p.E337* 0.27 TCGA-AA-3984-01 6 167754877 167754877 T G TTLL2 Missense_Mutation p.F497V 0.35 tolerated(0.61) benign(0) TCGA-AA-3984-01 6 167786710 167786710 C A TCP10 Nonsense_Mutation p.E310* 0.07 TCGA-AA-3984-01 6 168439394 168439394 C T KIF25 Missense_Mutation p.A160V 0.29 deleterious(0.04) benign(0.004) TCGA-AA-3984-01 6 168708355 168708355 G A DACT2 Silent p.F694F 0.10 TCGA-AA-3984-01 6 169617909 169617909 A C THBS2 3'UTR 0.06 TCGA-AA-3984-01 6 170068277 170068277 C T WDR27 Missense_Mutation p.R154Q 0.21 tolerated_low_confidence(0.33) benign(0) TCGA-AA-3984-01 6 170089027 170089027 A G WDR27 Silent p.V25V 0.24 TCGA-AA-3984-01 6 170104354 170104354 C A C6orf120 3'UTR 0.08 TCGA-AA-3984-01 6 170104874 170104874 G T C6orf120 3'UTR 0.12 TCGA-AA-3984-01 6 170156848 170156848 C A ERMARD Missense_Mutation p.L151I 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 6 17626205 17626205 T C NUP153 Silent p.E1245E 0.18 TCGA-AA-3984-01 6 17629745 17629745 C T NUP153 Silent p.S895S 0.14 TCGA-AA-3984-01 6 17637604 17637604 C T NUP153 Silent p.P748P 0.10 TCGA-AA-3984-01 6 17831355 17831355 C T KIF13A Missense_Mutation p.E460K 0.11 deleterious(0) possibly_damaging(0.679) TCGA-AA-3984-01 6 17852251 17852251 G A KIF13A Nonsense_Mutation p.R173* 0.17 TCGA-AA-3984-01 6 18200707 18200707 G A KDM1B Missense_Mutation p.R288Q 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-3984-01 6 18222190 18222190 C T KDM1B Silent p.G580G 0.14 TCGA-AA-3984-01 6 20124704 20124704 C T MBOAT1 Missense_Mutation p.R281Q 0.18 tolerated(0.28) possibly_damaging(0.453) TCGA-AA-3984-01 6 21596139 21596139 C A SOX4 Silent p.I458I 0.10 TCGA-AA-3984-01 6 22287490 22287490 T C PRL 3'UTR 0.37 TCGA-AA-3984-01 6 22290546 22290546 G A PRL Nonsense_Mutation p.R117* 0.27 TCGA-AA-3984-01 6 22570002 22570002 C T HDGFL1 Silent p.F66F 0.30 TCGA-AA-3984-01 6 24358092 24358092 A G KAAG1 Silent p.K75K 0.20 TCGA-AA-3984-01 6 24429258 24429258 C A GPLD1 3'UTR 0.26 TCGA-AA-3984-01 6 24523060 24523060 C T ALDH5A1 Silent p.F373F 0.26 TCGA-AA-3984-01 6 24581193 24581193 C T KIAA0319 Missense_Mutation p.A414T 0.38 deleterious(0) probably_damaging(0.97) TCGA-AA-3984-01 6 24701858 24701858 G A ACOT13 3'UTR 0.09 TCGA-AA-3984-01 6 24716489 24716489 C A C6orf62 Nonsense_Mutation p.E65* 0.17 TCGA-AA-3984-01 6 24847816 24847816 T C FAM65B Missense_Mutation p.D394G 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-AA-3984-01 6 24850926 24850926 G A FAM65B Missense_Mutation p.R233W 0.12 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 25109800 25109800 T G CMAHP RNA 0.10 TCGA-AA-3984-01 6 25581642 25581642 A C LRRC16A Missense_Mutation p.K994T 0.25 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 6 25769361 25769361 G A SLC17A4 Silent p.R80R 0.15 TCGA-AA-3984-01 6 25799141 25799141 C T SLC17A1 Missense_Mutation p.E426K 0.17 deleterious(0) benign(0.209) TCGA-AA-3984-01 6 26094575 26094575 G A HFE 3'UTR 0.38 TCGA-AA-3984-01 6 26392620 26392620 C A BTN2A2 Missense_Mutation p.P333T 0.29 deleterious(0.03) probably_damaging(0.918) TCGA-AA-3984-01 6 26393047 26393047 C T BTN2A2 Missense_Mutation p.A475V 0.09 tolerated(0.09) benign(0.002) TCGA-AA-3984-01 6 26413703 26413703 G A BTN3A1 Missense_Mutation p.R442Q 0.28 tolerated(0.37) benign(0.121) TCGA-AA-3984-01 6 26428273 26428273 G A BTN2A3P RNA 0.27 TCGA-AA-3984-01 6 26465571 26465571 G T BTN2A1 Nonsense_Mutation p.E291* 0.06 TCGA-AA-3984-01 6 2671574 2671574 C T MYLK4 Silent p.K376K 0.20 TCGA-AA-3984-01 6 27369123 27369123 G T ZNF391 Missense_Mutation p.R325I 0.30 deleterious(0.04) probably_damaging(0.987) TCGA-AA-3984-01 6 27419223 27419223 C A ZNF184 Missense_Mutation p.K705N 0.17 deleterious(0) probably_damaging(0.946) TCGA-AA-3984-01 6 27424650 27424650 C T ZNF184 Missense_Mutation p.E85K 0.22 tolerated(0.24) benign(0.192) TCGA-AA-3984-01 6 27775305 27775305 T C HIST1H2BL Silent p.%3D 0.22 TCGA-AA-3984-01 6 27792136 27792136 G A HIST1H4J Silent p.K78K 0.18 TCGA-AA-3984-01 6 27925291 27925291 A C OR2B6 Silent p.V91V 0.29 TCGA-AA-3984-01 6 28056384 28056384 T G ZNF165 Missense_Mutation p.I198M 0.17 deleterious(0.04) benign(0.022) TCGA-AA-3984-01 6 28116257 28116257 C T ZKSCAN8 Silent p.I24I 0.19 TCGA-AA-3984-01 6 28134630 28134630 G C ZNF192P1 RNA 0.18 TCGA-AA-3984-01 6 28135074 28135074 G A ZNF192P1 RNA 0.10 TCGA-AA-3984-01 6 28228168 28228168 T C NKAPL Missense_Mutation p.V340A 0.11 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 6 28350363 28350363 A G ZSCAN12 Missense_Mutation p.I573T 0.25 tolerated_low_confidence(0.18) benign(0.025) TCGA-AA-3984-01 6 28472049 28472049 C A GPX6 3'UTR 0.27 TCGA-AA-3984-01 6 28493868 28493868 G T GPX5 Missense_Mutation p.E26D 0.07 tolerated(0.13) benign(0.007) TCGA-AA-3984-01 6 28543043 28543043 C T SCAND3 Missense_Mutation p.R480Q 0.10 tolerated_low_confidence(1) benign(0) TCGA-AA-3984-01 6 28963055 28963055 C A ZNF311 Missense_Mutation p.R575I 0.12 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 6 28963143 28963143 G A ZNF311 Nonsense_Mutation p.R546* 0.17 TCGA-AA-3984-01 6 29080290 29080290 T C OR2J3 Missense_Mutation p.I208T 0.24 deleterious(0.02) benign(0.03) TCGA-AA-3984-01 6 29430816 29430816 T C OR2H1 3'UTR 0.27 TCGA-AA-3984-01 6 29431606 29431606 C A OR2H1 3'UTR 0.29 TCGA-AA-3984-01 6 29638093 29638093 A G MOG Missense_Mutation p.T210A 0.23 tolerated(0.54) benign(0.006) TCGA-AA-3984-01 6 29911295 29911295 C T HLA-A Silent p.N198N 0.11 TCGA-AA-3984-01 6 30122190 30122190 G T TRIM10 Missense_Mutation p.F334L 0.31 tolerated(0.05) probably_damaging(0.998) TCGA-AA-3984-01 6 30576652 30576652 C A PPP1R10 Missense_Mutation p.W78C 0.16 deleterious(0) possibly_damaging(0.887) TCGA-AA-3984-01 6 30679861 30679861 C T MDC1 Missense_Mutation p.A620T 0.28 tolerated(0.32) probably_damaging(0.977) TCGA-AA-3984-01 6 30681737 30681737 C A MDC1 Missense_Mutation p.L120F 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3984-01 6 30916632 30916632 G T DPCR1 Missense_Mutation p.D131Y 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3984-01 6 31474079 31474079 C T MICB Missense_Mutation p.A162V 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-AA-3984-01 6 31678166 31678166 C A LY6G6F Silent p.V280V 0.25 TCGA-AA-3984-01 6 31728555 31728555 G A MSH5 Missense_Mutation p.R634Q 0.08 deleterious(0.01) benign(0.222) TCGA-AA-3984-01 6 31964227 31964227 A C C4A Missense_Mutation p.N1176H 0.07 tolerated(0.21) benign(0.02) TCGA-AA-3984-01 6 31975224 31975224 T C C4A 3'Flank 0.16 TCGA-AA-3984-01 6 31994886 31994886 A G C4B Missense_Mutation p.D860G 0.09 tolerated(0.14) benign(0.063) TCGA-AA-3984-01 6 32008487 32008487 G A CYP21A2 Silent p.P387P 0.10 TCGA-AA-3984-01 6 32015689 32015689 G A TNXB 5'Flank 0.32 TCGA-AA-3984-01 6 32017951 32017951 T C TNXB 5'Flank 0.14 TCGA-AA-3984-01 6 32020625 32020625 G A TNXB Silent p.F2977F 0.44 TCGA-AA-3984-01 6 32096894 32096894 G A FKBPL Nonsense_Mutation p.R222* 0.14 TCGA-AA-3984-01 6 32125623 32125623 G A PPT2 Missense_Mutation p.R217Q 0.06 deleterious(0.01) possibly_damaging(0.612) TCGA-AA-3984-01 6 32154649 32154649 A C PBX2 Missense_Mutation p.S352A 0.19 tolerated(0.25) benign(0.02) TCGA-AA-3984-01 6 32169036 32169036 G A NOTCH4 Missense_Mutation p.R1333C 0.37 deleterious(0.03) benign(0.247) TCGA-AA-3984-01 6 3226438 3226438 A G TUBB2B Missense_Mutation p.S78P 0.11 deleterious_low_confidence(0) benign(0.326) TCGA-AA-3984-01 6 3226446 3226446 G A TUBB2B Missense_Mutation p.S75L 0.17 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-AA-3984-01 6 32789944 32789944 C T TAP2 3'UTR 0.21 TCGA-AA-3984-01 6 32825836 32825836 T G PSMB9 Missense_Mutation p.N105K 0.36 tolerated(0.29) benign(0.344) TCGA-AA-3984-01 6 32948360 32948360 G A BRD2 Silent p.A792A 0.25 TCGA-AA-3984-01 6 33037439 33037439 T C HLA-DPA1 Missense_Mutation p.N109D 0.33 deleterious(0.01) probably_damaging(0.98) TCGA-AA-3984-01 6 33139244 33139244 C A COL11A2 Missense_Mutation p.K1000N 0.15 possibly_damaging(0.607) TCGA-AA-3984-01 6 33141943 33141943 C T COL11A2 Missense_Mutation p.R742Q 0.28 benign(0.417) TCGA-AA-3984-01 6 33154439 33154439 G A COL11A2 Missense_Mutation p.L255F 0.24 probably_damaging(0.994) TCGA-AA-3984-01 6 33167187 33167187 C T RXRB Missense_Mutation p.R81Q 0.17 tolerated_low_confidence(0.07) unknown(0) TCGA-AA-3984-01 6 33179772 33179772 C T RING1 Missense_Mutation p.A371V 0.23 tolerated(0.07) unknown(0) TCGA-AA-3984-01 6 33236863 33236863 C T VPS52 Missense_Mutation p.R159Q 0.30 tolerated(0.45) benign(0.041) TCGA-AA-3984-01 6 33272324 33272324 G T TAPBP Missense_Mutation p.F320L 0.46 deleterious(0.01) possibly_damaging(0.753) TCGA-AA-3984-01 6 33283201 33283201 C T ZBTB22 Missense_Mutation p.S498N 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-AA-3984-01 6 34507135 34507135 C T SPDEF Missense_Mutation p.D241N 0.15 tolerated(0.06) possibly_damaging(0.889) TCGA-AA-3984-01 6 34827058 34827058 A G UHRF1BP1 Silent p.L975L 0.31 TCGA-AA-3984-01 6 34850872 34850872 G T TAF11 Intron 0.24 TCGA-AA-3984-01 6 35050569 35050569 C T ANKS1A Silent p.F937F 0.07 TCGA-AA-3984-01 6 35196485 35196485 C A SCUBE3 Missense_Mutation p.F101L 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 6 35438542 35438542 A C RPL10A 3'UTR 0.38 TCGA-AA-3984-01 6 35446208 35446208 T C TEAD3 Intron 0.11 TCGA-AA-3984-01 6 35706272 35706272 A C ARMC12 Silent p.R168R 0.18 TCGA-AA-3984-01 6 35715086 35715086 G A ARMC12 Missense_Mutation p.E192K 0.15 deleterious(0.03) possibly_damaging(0.46) TCGA-AA-3984-01 6 35838092 35838092 C A SRPK1 Missense_Mutation p.E319D 0.07 tolerated(0.39) benign(0.084) TCGA-AA-3984-01 6 35856592 35856592 T G SRPK1 Missense_Mutation p.Q101P 0.22 deleterious(0.01) possibly_damaging(0.724) TCGA-AA-3984-01 6 35919255 35919255 C T SLC26A8 Missense_Mutation p.A752T 0.25 tolerated(0.32) benign(0.243) TCGA-AA-3984-01 6 36075327 36075327 G A MAPK14 Missense_Mutation p.D313N 0.38 deleterious(0.01) possibly_damaging(0.472) TCGA-AA-3984-01 6 36168931 36168931 G A BRPF3 Missense_Mutation p.A278T 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 36867326 36867326 G T C6orf89 Nonsense_Mutation p.E43* 0.17 TCGA-AA-3984-01 6 36891131 36891131 G A C6orf89 Missense_Mutation p.D327N 0.25 tolerated(0.85) benign(0.026) TCGA-AA-3984-01 6 36931125 36931125 C A PI16 Missense_Mutation p.S336Y 0.08 deleterious(0) possibly_damaging(0.481) TCGA-AA-3984-01 6 37252206 37252206 G A TBC1D22B Missense_Mutation p.R256Q 0.12 tolerated(0.08) probably_damaging(1) TCGA-AA-3984-01 6 37440242 37440242 G A CMTR1 Silent p.S556S 0.18 TCGA-AA-3984-01 6 37622675 37622675 G A MDGA1 Missense_Mutation p.R205W 0.19 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 6 38790796 38790796 G A DNAH8 Missense_Mutation p.D1019N 0.15 benign(0.001) TCGA-AA-3984-01 6 38810443 38810443 C T DNAH8 Missense_Mutation p.R1320C 0.21 benign(0.444) TCGA-AA-3984-01 6 38818100 38818100 T C DNAH8 Missense_Mutation p.V1541A 0.11 possibly_damaging(0.654) TCGA-AA-3984-01 6 38831667 38831667 C T DNAH8 Missense_Mutation p.S1893F 0.24 probably_damaging(0.997) TCGA-AA-3984-01 6 38903405 38903405 T C DNAH8 Missense_Mutation p.V3615A 0.23 probably_damaging(0.995) TCGA-AA-3984-01 6 38957810 38957810 T G DNAH8 Missense_Mutation p.F4142C 0.23 probably_damaging(0.987) TCGA-AA-3984-01 6 39034011 39034011 C A GLP1R Silent p.I147I 0.14 TCGA-AA-3984-01 6 39159259 39159259 C T KCNK5 Missense_Mutation p.D303N 0.14 deleterious(0.04) probably_damaging(0.98) TCGA-AA-3984-01 6 39281884 39281884 G A KCNK17 Silent p.R71R 0.26 TCGA-AA-3984-01 6 39283040 39283040 G A KCNK16 Missense_Mutation p.P277S 0.30 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-AA-3984-01 6 39284097 39284097 G A KCNK16 Intron 0.09 TCGA-AA-3984-01 6 39286808 39286808 G A KCNK16 Silent p.V105V 0.12 TCGA-AA-3984-01 6 39304158 39304158 G T KIF6 3'UTR 0.35 TCGA-AA-3984-01 6 39688585 39688585 A C KIF6 Missense_Mutation p.I23M 0.17 deleterious(0.01) possibly_damaging(0.889) TCGA-AA-3984-01 6 39893439 39893439 T G MOCS1 Missense_Mutation p.D134A 0.28 deleterious(0) probably_damaging(0.92) TCGA-AA-3984-01 6 40400176 40400176 A G LRFN2 Missense_Mutation p.L226S 0.25 tolerated(0.77) benign(0.065) TCGA-AA-3984-01 6 4069573 4069573 C T FAM217A Missense_Mutation p.R295Q 0.08 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 6 41000703 41000703 C T UNC5CL Missense_Mutation p.R290H 0.24 tolerated(0.53) benign(0.007) TCGA-AA-3984-01 6 41029269 41029269 G A APOBEC2 Missense_Mutation p.D112N 0.22 tolerated(0.29) benign(0.186) TCGA-AA-3984-01 6 41065265 41065265 A C NFYA 3'UTR 0.30 TCGA-AA-3984-01 6 41119117 41119117 C T TREML1 Missense_Mutation p.E128K 0.14 tolerated(0.48) benign(0.017) TCGA-AA-3984-01 6 41243751 41243751 G A TREM1 3'UTR 0.40 TCGA-AA-3984-01 6 41250150 41250150 C T TREM1 Missense_Mutation p.R130H 0.13 tolerated(0.19) benign(0.17) TCGA-AA-3984-01 6 41250490 41250490 C A TREM1 Splice_Site p.X17_splice 0.22 TCGA-AA-3984-01 6 4130668 4130668 C T ECI2 Missense_Mutation p.E147K 0.07 tolerated(0.27) benign(0.031) TCGA-AA-3984-01 6 4130805 4130805 G A C6orf201 3'UTR 0.10 TCGA-AA-3984-01 6 41318518 41318518 T G NCR2 Silent p.V249V 0.20 TCGA-AA-3984-01 6 42232488 42232488 T C TRERF1 Missense_Mutation p.H530R 0.09 deleterious(0) possibly_damaging(0.537) TCGA-AA-3984-01 6 42604752 42604752 A C UBR2 Missense_Mutation p.K560Q 0.16 tolerated(0.41) benign(0.004) TCGA-AA-3984-01 6 42631104 42631104 C T UBR2 Silent p.C1215C 0.21 TCGA-AA-3984-01 6 42633976 42633976 C T UBR2 Missense_Mutation p.R1292C 0.23 tolerated(0.05) benign(0.002) TCGA-AA-3984-01 6 42852411 42852411 T G RPL7L1 Missense_Mutation p.I115M 0.16 deleterious(0.02) benign(0.154) TCGA-AA-3984-01 6 43146043 43146043 G A SRF Missense_Mutation p.A392T 0.38 tolerated(0.12) probably_damaging(0.959) TCGA-AA-3984-01 6 43166400 43166400 C T CUL9 Nonsense_Mutation p.R953* 0.24 TCGA-AA-3984-01 6 43172205 43172205 C T CUL9 Missense_Mutation p.R1423C 0.09 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 6 43403514 43403514 G A ABCC10 Missense_Mutation p.R545Q 0.07 tolerated(0.16) benign(0.011) TCGA-AA-3984-01 6 43409684 43409684 C T ABCC10 Missense_Mutation p.R738C 0.18 deleterious(0) probably_damaging(0.984) TCGA-AA-3984-01 6 43417214 43417214 C T ABCC10 Missense_Mutation p.L1420F 0.17 deleterious(0) benign(0.398) TCGA-AA-3984-01 6 43470360 43470360 C T TJAP1 Intron 0.08 TCGA-AA-3984-01 6 43491544 43491544 C T XPO5 3'UTR 0.20 TCGA-AA-3984-01 6 43516068 43516068 G A XPO5 Missense_Mutation p.R664C 0.23 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 6 43528692 43528692 G T XPO5 Missense_Mutation p.S355Y 0.07 deleterious(0) possibly_damaging(0.862) TCGA-AA-3984-01 6 43592698 43592698 G C GTPBP2 Missense_Mutation p.H269Q 0.25 deleterious(0) benign(0.05) TCGA-AA-3984-01 6 44217155 44217155 G A HSP90AB1 Silent p.S63S 0.24 TCGA-AA-3984-01 6 44241040 44241040 G A TMEM151B Missense_Mutation p.A125T 0.24 deleterious(0) benign(0.172) TCGA-AA-3984-01 6 44271042 44271042 C A AARS2 Missense_Mutation p.G709V 0.33 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 6 44272028 44272028 T C AARS2 Missense_Mutation p.T633A 0.18 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 6 44336225 44336225 G T SPATS1 Silent p.V228V 0.34 TCGA-AA-3984-01 6 44414375 44414375 A G CDC5L Missense_Mutation p.E779G 0.11 deleterious(0.03) possibly_damaging(0.477) TCGA-AA-3984-01 6 44900431 44900431 G A SUPT3H Nonsense_Mutation p.R302* 0.17 TCGA-AA-3984-01 6 44929547 44929547 G A SUPT3H Nonsense_Mutation p.R186* 0.20 TCGA-AA-3984-01 6 45514854 45514854 C T RUNX2 Missense_Mutation p.P460S 0.19 tolerated(0.22) probably_damaging(0.976) TCGA-AA-3984-01 6 46620150 46620150 C A CYP39A1 Missense_Mutation p.R57I 0.12 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 6 46620215 46620215 C T CYP39A1 Nonsense_Mutation p.W35* 0.15 TCGA-AA-3984-01 6 46656967 46656967 C T TDRD6 Nonsense_Mutation p.R368* 0.10 TCGA-AA-3984-01 6 46660961 46660961 C A TDRD6 Missense_Mutation p.S1699Y 0.21 tolerated(0.38) possibly_damaging(0.71) TCGA-AA-3984-01 6 46661636 46661636 C A TDRD6 Missense_Mutation p.S1924Y 0.16 tolerated(0.08) possibly_damaging(0.707) TCGA-AA-3984-01 6 46800870 46800870 C T MEP1A Missense_Mutation p.R402C 0.25 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 46834663 46834663 A C GPR116 Silent p.A611A 0.16 TCGA-AA-3984-01 6 46847599 46847599 G A GPR116 Missense_Mutation p.S331L 0.07 tolerated(0.06) benign(0.177) TCGA-AA-3984-01 6 47649421 47649421 A C GPR111 Silent p.R376R 0.08 TCGA-AA-3984-01 6 47678478 47678478 C T GPR115 Silent p.C52C 0.26 TCGA-AA-3984-01 6 47847331 47847331 G A PTCHD4 Missense_Mutation p.R417C 0.20 tolerated(0.06) probably_damaging(0.995) TCGA-AA-3984-01 6 49427119 49427119 C A MUT Nonsense_Mutation p.E21* 0.22 TCGA-AA-3984-01 6 49585890 49585890 G T RHAG Missense_Mutation p.S128Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 6 49754896 49754896 G T PGK2 Missense_Mutation p.S2Y 0.11 deleterious(0) unknown(0) TCGA-AA-3984-01 6 50718942 50718942 C T TFAP2D Silent p.F348F 0.33 TCGA-AA-3984-01 6 50805719 50805719 C T TFAP2B Nonsense_Mutation p.R285* 0.25 TCGA-AA-3984-01 6 51882351 51882351 A G PKHD1 Silent p.C1819C 0.20 TCGA-AA-3984-01 6 51890800 51890800 C T PKHD1 Missense_Mutation p.E1270K 0.17 tolerated(0.35) benign(0.41) TCGA-AA-3984-01 6 51893142 51893142 C A PKHD1 Missense_Mutation p.E1124D 0.11 tolerated(0.22) benign(0.013) TCGA-AA-3984-01 6 52272482 52272482 A C PAQR8 3'UTR 0.22 TCGA-AA-3984-01 6 52962605 52962605 G A FBXO9 Missense_Mutation p.A441T 0.33 tolerated(0.08) probably_damaging(0.994) TCGA-AA-3984-01 6 53363681 53363681 T G GCLC Missense_Mutation p.E596A 0.41 tolerated(0.15) benign(0.014) TCGA-AA-3984-01 6 53519259 53519259 T C KLHL31 Missense_Mutation p.Y271C 0.08 tolerated(0.09) probably_damaging(0.935) TCGA-AA-3984-01 6 5368970 5368970 A C FARS2 Missense_Mutation p.K56T 0.13 tolerated(0.26) benign(0.002) TCGA-AA-3984-01 6 53707020 53707020 G A LRRC1 Missense_Mutation p.R91Q 0.16 deleterious(0.02) possibly_damaging(0.882) TCGA-AA-3984-01 6 53761655 53761655 G T LRRC1 Nonsense_Mutation p.E178* 0.07 TCGA-AA-3984-01 6 53989330 53989330 G A MLIP Silent p.A93A 0.15 TCGA-AA-3984-01 6 53989363 53989363 G A MLIP Silent p.T104T 0.14 TCGA-AA-3984-01 6 54806151 54806151 A G FAM83B Silent p.A794A 0.11 TCGA-AA-3984-01 6 55441924 55441924 G T HMGCLL1 Silent p.V50V 0.09 TCGA-AA-3984-01 6 55935548 55935548 G A COL21A1 Missense_Mutation p.L672F 0.11 tolerated(0.71) benign(0.078) TCGA-AA-3984-01 6 56035591 56035591 A C COL21A1 Missense_Mutation p.I294M 0.14 tolerated(0.11) benign(0.007) TCGA-AA-3984-01 6 56354329 56354329 T G DST Missense_Mutation p.N4323H 0.17 probably_damaging(1) TCGA-AA-3984-01 6 56374627 56374627 G A DST Silent p.I3652I 0.10 TCGA-AA-3984-01 6 56433282 56433282 C T DST Missense_Mutation p.A2041T 0.21 benign(0.007) TCGA-AA-3984-01 6 56433368 56433368 T G DST Missense_Mutation p.K2012T 0.27 probably_damaging(1) TCGA-AA-3984-01 6 56470011 56470011 C A DST Intron 0.18 TCGA-AA-3984-01 6 56470640 56470640 T C DST Intron 0.24 TCGA-AA-3984-01 6 56470965 56470965 C A DST Intron 0.25 TCGA-AA-3984-01 6 56481024 56481024 T G DST Intron 0.09 TCGA-AA-3984-01 6 56481793 56481793 C T DST Intron 0.10 TCGA-AA-3984-01 6 56482831 56482831 C A DST Intron 0.20 TCGA-AA-3984-01 6 56482915 56482915 T C DST Intron 0.20 TCGA-AA-3984-01 6 56484738 56484738 T G DST Intron 0.25 TCGA-AA-3984-01 6 56496828 56496828 C A DST Missense_Mutation p.E735D 0.16 probably_damaging(0.968) TCGA-AA-3984-01 6 56918108 56918108 G T KIAA1586 Nonsense_Mutation p.E271* 0.19 TCGA-AA-3984-01 6 57011899 57011899 G A ZNF451 Missense_Mutation p.R339Q 0.42 tolerated(0.08) benign(0.06) TCGA-AA-3984-01 6 57012762 57012762 T C ZNF451 Missense_Mutation p.S627P 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 6 57012841 57012841 G A ZNF451 Missense_Mutation p.R653Q 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3984-01 6 57183364 57183364 G T PRIM2 Nonsense_Mutation p.E41* 0.21 TCGA-AA-3984-01 6 57398214 57398214 G A PRIM2 Missense_Mutation p.R306Q 0.10 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 6 62611194 62611194 C T KHDRBS2 Missense_Mutation p.G189D 0.23 tolerated(0.13) benign(0.001) TCGA-AA-3984-01 6 64422607 64422607 C T PHF3 Missense_Mutation p.S1708L 0.20 tolerated(0.34) benign(0.054) TCGA-AA-3984-01 6 64574093 64574093 G A EYS Missense_Mutation p.P2405L 0.11 tolerated(1) benign(0.001) TCGA-AA-3984-01 6 64574140 64574140 T C EYS Silent p.K2389K 0.18 TCGA-AA-3984-01 6 64791891 64791891 T C EYS Silent p.A2143A 0.09 TCGA-AA-3984-01 6 65301614 65301614 G A EYS Silent p.F1382F 0.17 TCGA-AA-3984-01 6 65531609 65531609 C T EYS Missense_Mutation p.E1058K 0.23 deleterious(0.01) benign(0.005) TCGA-AA-3984-01 6 65622524 65622524 G A EYS Nonsense_Mutation p.Q832* 0.25 TCGA-AA-3984-01 6 65655771 65655771 T G EYS Missense_Mutation p.N766H 0.16 tolerated(0.12) benign(0.038) TCGA-AA-3984-01 6 66044832 66044832 T G EYS Intron 0.28 TCGA-AA-3984-01 6 66204667 66204667 C T EYS Missense_Mutation p.E213K 0.22 tolerated(0.07) probably_damaging(0.916) TCGA-AA-3984-01 6 6626593 6626593 C A LY86 Missense_Mutation p.F97L 0.08 tolerated(0.21) benign(0.037) TCGA-AA-3984-01 6 69348961 69348961 C T BAI3 Nonsense_Mutation p.R132* 0.28 TCGA-AA-3984-01 6 69640491 69640491 A G BAI3 Silent p.R266R 0.20 TCGA-AA-3984-01 6 69772890 69772890 G A BAI3 Missense_Mutation p.D800N 0.31 tolerated(0.21) benign(0.438) TCGA-AA-3984-01 6 69772894 69772894 C A BAI3 Nonsense_Mutation p.S801* 0.10 TCGA-AA-3984-01 6 70048878 70048878 T G BAI3 Missense_Mutation p.L1087V 0.15 tolerated(0.21) probably_damaging(0.982) TCGA-AA-3984-01 6 71009859 71009859 C T COL9A1 Silent p.Q62Q 0.25 TCGA-AA-3984-01 6 72003078 72003078 A G OGFRL1 Missense_Mutation p.Y106C 0.07 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 6 7229239 7229239 G A RREB1 Missense_Mutation p.E303K 0.11 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 6 7246656 7246656 G A RREB1 Splice_Site p.X1325_splice 0.20 TCGA-AA-3984-01 6 72892211 72892211 G T RIMS1 Missense_Mutation p.R346I 0.14 deleterious(0.02) benign(0.081) TCGA-AA-3984-01 6 73043428 73043428 C T RIMS1 Missense_Mutation p.A1419V 0.06 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 6 73100388 73100388 G A RIMS1 Silent p.P1485P 0.28 TCGA-AA-3984-01 6 73102419 73102419 C T RIMS1 Nonsense_Mutation p.R1509* 0.37 TCGA-AA-3984-01 6 7386102 7386102 C T CAGE1 Missense_Mutation p.E67K 0.46 tolerated(0.08) probably_damaging(0.956) TCGA-AA-3984-01 6 73951296 73951296 C A KHDC1 Missense_Mutation p.V224L 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-AA-3984-01 6 74304708 74304708 G T SLC17A5 3'UTR 0.22 TCGA-AA-3984-01 6 74530227 74530227 A C CD109 Missense_Mutation p.N1368H 0.30 deleterious(0.03) benign(0.1) TCGA-AA-3984-01 6 74533254 74533254 G A CD109 Missense_Mutation p.G1412D 0.28 tolerated(0.61) benign(0.002) TCGA-AA-3984-01 6 75813471 75813471 A G COL12A1 Splice_Site p.X2773_splice 0.14 TCGA-AA-3984-01 6 75838045 75838045 C T COL12A1 Missense_Mutation p.D2103N 0.17 probably_damaging(0.999) TCGA-AA-3984-01 6 75851838 75851838 C A COL12A1 Missense_Mutation p.D1623Y 0.19 probably_damaging(0.925) TCGA-AA-3984-01 6 7585295 7585295 G A DSP Silent p.R2600R 0.10 TCGA-AA-3984-01 6 75893642 75893642 C T COL12A1 Missense_Mutation p.A406T 0.27 possibly_damaging(0.565) TCGA-AA-3984-01 6 75965984 75965984 C T TMEM30A Missense_Mutation p.R307Q 0.21 tolerated(0.06) possibly_damaging(0.882) TCGA-AA-3984-01 6 7602865 7602865 G A SNRNP48 Missense_Mutation p.R202Q 0.21 tolerated(1) benign(0.001) TCGA-AA-3984-01 6 76715089 76715089 G T IMPG1 Silent p.L350L 0.15 TCGA-AA-3984-01 6 80201340 80201340 C T LCA5 Missense_Mutation p.E355K 0.20 tolerated(0.09) benign(0.271) TCGA-AA-3984-01 6 80634686 80634686 T C ELOVL4 Missense_Mutation p.N118D 0.17 tolerated(1) benign(0.006) TCGA-AA-3984-01 6 83818693 83818693 T G DOPEY1 Missense_Mutation p.Y129D 0.08 deleterious(0) probably_damaging(0.932) TCGA-AA-3984-01 6 83880116 83880116 C A PGM3 Missense_Mutation p.D511Y 0.21 deleterious(0.01) benign(0.285) TCGA-AA-3984-01 6 83889686 83889686 C T PGM3 Missense_Mutation p.G291E 0.23 deleterious(0) probably_damaging(0.989) TCGA-AA-3984-01 6 83938569 83938569 C A ME1 Nonsense_Mutation p.E370* 0.23 TCGA-AA-3984-01 6 84569480 84569480 G C CYB5R4 5'UTR 0.26 TCGA-AA-3984-01 6 84603245 84603245 C T CYB5R4 Silent p.F78F 0.26 TCGA-AA-3984-01 6 84798828 84798828 G T MRAP2 Missense_Mutation p.E82D 0.13 tolerated(0.13) probably_damaging(0.99) TCGA-AA-3984-01 6 84799037 84799037 G T MRAP2 Missense_Mutation p.G152V 0.12 deleterious(0.01) benign(0.2) TCGA-AA-3984-01 6 84862346 84862346 G A KIAA1009 Silent p.L1183L 0.29 TCGA-AA-3984-01 6 84883776 84883776 T G KIAA1009 Silent p.G719G 0.25 TCGA-AA-3984-01 6 86325058 86325058 C T SYNCRIP Missense_Mutation p.D430N 0.07 tolerated(0.32) unknown(0) TCGA-AA-3984-01 6 87725621 87725621 C T HTR1E Missense_Mutation p.A190V 0.14 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 87795545 87795545 C T CGA Missense_Mutation p.V94I 0.07 tolerated(0.49) benign(0.121) TCGA-AA-3984-01 6 87968282 87968282 A C ZNF292 Missense_Mutation p.Q1645H 0.07 tolerated_low_confidence(0.15) benign(0.014) TCGA-AA-3984-01 6 87968782 87968782 T G ZNF292 Missense_Mutation p.F1812C 0.18 tolerated_low_confidence(0.2) benign(0.002) TCGA-AA-3984-01 6 87969864 87969864 C T ZNF292 Nonsense_Mutation p.R2173* 0.10 TCGA-AA-3984-01 6 87971454 87971454 G T ZNF292 Missense_Mutation p.D2703Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-AA-3984-01 6 88107953 88107953 C T C6orf164 Silent p.V7V 0.12 TCGA-AA-3984-01 6 88173747 88173747 C T C6ORF165 Missense_Mutation p.R550C 0.13 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 6 88221392 88221392 G A SLC35A1 3'UTR 0.24 TCGA-AA-3984-01 6 88221395 88221395 G A SLC35A1 3'UTR 0.35 TCGA-AA-3984-01 6 88258341 88258341 A C RARS2 Missense_Mutation p.F140C 0.18 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 6 88331703 88331703 C T ORC3 Missense_Mutation p.A386V 0.21 tolerated(0.15) benign(0.031) TCGA-AA-3984-01 6 88391445 88391445 C T AKIRIN2 Missense_Mutation p.R91Q 0.06 deleterious(0) probably_damaging(0.975) TCGA-AA-3984-01 6 88853852 88853852 A C CNR1 Missense_Mutation p.F381C 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 6 89322264 89322264 G A RNGTT 3'UTR 0.40 TCGA-AA-3984-01 6 89638917 89638917 C A RNGTT Nonsense_Mutation p.E82* 0.17 TCGA-AA-3984-01 6 89638934 89638934 C T RNGTT Missense_Mutation p.R76Q 0.20 deleterious(0.01) benign(0.191) TCGA-AA-3984-01 6 89967672 89967672 G T GABRR2 Nonsense_Mutation p.S372* 0.14 TCGA-AA-3984-01 6 90024806 90024806 G A GABRR2 Nonsense_Mutation p.R27* 0.05 TCGA-AA-3984-01 6 90331663 90331663 G A ANKRD6 Missense_Mutation p.R272Q 0.22 deleterious(0) probably_damaging(0.956) TCGA-AA-3984-01 6 90346931 90346931 T C LYRM2 3'UTR 0.09 TCGA-AA-3984-01 6 90359906 90359906 C T MDN1 Missense_Mutation p.R5348Q 0.13 unknown(0) TCGA-AA-3984-01 6 90365529 90365529 G A MDN1 Silent p.F5148F 0.19 TCGA-AA-3984-01 6 90393625 90393625 T G MDN1 Splice_Site p.X3944_splice 0.21 TCGA-AA-3984-01 6 90397868 90397868 G A MDN1 Missense_Mutation p.R3762C 0.22 benign(0.007) TCGA-AA-3984-01 6 90572336 90572336 C T CASP8AP2 RNA 0.17 TCGA-AA-3984-01 6 90578519 90578519 G T CASP8AP2 RNA 0.13 TCGA-AA-3984-01 6 90605023 90605023 G T GJA10 Missense_Mutation p.R279I 0.16 deleterious(0) possibly_damaging(0.62) TCGA-AA-3984-01 6 90660190 90660190 G T BACH2 Missense_Mutation p.F545L 0.09 tolerated(0.6) benign(0.055) TCGA-AA-3984-01 6 90661562 90661562 C G BACH2 Missense_Mutation p.G88A 0.23 tolerated(1) benign(0.023) TCGA-AA-3984-01 6 93953091 93953091 C T EPHA7 3'UTR 0.47 TCGA-AA-3984-01 6 94066663 94066663 T G EPHA7 Silent p.R366R 0.18 TCGA-AA-3984-01 6 96034369 96034369 T G MANEA Missense_Mutation p.F18L 0.19 tolerated(0.38) benign(0.002) TCGA-AA-3984-01 6 96651035 96651035 A G FUT9 Missense_Mutation p.T2A 0.10 deleterious(0.03) benign(0.217) TCGA-AA-3984-01 6 96651889 96651889 C T FUT9 Silent p.F286F 0.11 TCGA-AA-3984-01 6 96653329 96653329 A G FUT9 3'UTR 0.27 TCGA-AA-3984-01 6 96656034 96656034 C A FUT9 3'UTR 0.24 TCGA-AA-3984-01 6 96656121 96656121 C T FUT9 3'UTR 0.12 TCGA-AA-3984-01 6 96657054 96657054 C A FUT9 3'UTR 0.16 TCGA-AA-3984-01 6 96657162 96657162 C A FUT9 3'UTR 0.16 TCGA-AA-3984-01 6 96658483 96658483 A C FUT9 3'UTR 0.35 TCGA-AA-3984-01 6 96658583 96658584 - T FUT9 3'UTR 0.13 TCGA-AA-3984-01 6 96658691 96658691 T G FUT9 3'UTR 0.18 TCGA-AA-3984-01 6 96660387 96660387 G T FUT9 3'UTR 0.22 TCGA-AA-3984-01 6 96661989 96661989 C A FUT9 3'UTR 0.17 TCGA-AA-3984-01 6 97626325 97626325 G T MMS22L Missense_Mutation p.F891L 0.24 deleterious(0) possibly_damaging(0.504) TCGA-AA-3984-01 6 99285325 99285325 G T POU3F2 3'UTR 0.14 TCGA-AA-3984-01 6 99286365 99286365 C T POU3F2 3'UTR 0.09 TCGA-AA-3984-01 6 99347157 99347157 C T FBXL4 Missense_Mutation p.R435Q 0.16 deleterious(0) probably_damaging(0.986) TCGA-AA-3984-01 6 99781275 99781275 C A FAXC Missense_Mutation p.R184I 0.10 tolerated(0.13) benign(0.078) TCGA-AA-3984-01 6 99848366 99848366 A C PNISR 3'UTR 0.17 TCGA-AA-3984-01 6 99850449 99850449 C A PNISR Nonsense_Mutation p.E432* 0.15 TCGA-AA-3984-01 7 100030662 100030662 C T MEPCE Missense_Mutation p.R598C 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-AA-3984-01 7 100087172 100087172 G A NYAP1 Missense_Mutation p.A610T 0.28 tolerated(0.25) benign(0.003) TCGA-AA-3984-01 7 100087219 100087219 G A NYAP1 Silent p.A625A 0.07 TCGA-AA-3984-01 7 100350710 100350710 A C ZAN Silent p.T994T 0.28 TCGA-AA-3984-01 7 100361699 100361699 C A ZAN Missense_Mutation p.L1383I 0.24 unknown(0) TCGA-AA-3984-01 7 100363076 100363076 G A ZAN Missense_Mutation p.V1457M 0.27 unknown(0) TCGA-AA-3984-01 7 100366274 100366274 G A ZAN Missense_Mutation p.D1695N 0.27 unknown(0) TCGA-AA-3984-01 7 100486236 100486236 G T SRRT 3'UTR 0.31 TCGA-AA-3984-01 7 100678602 100678602 C A MUC17 Missense_Mutation p.P1302H 0.10 unknown(0) TCGA-AA-3984-01 7 100684394 100684394 C T MUC17 Missense_Mutation p.P3233S 0.34 benign(0.029) TCGA-AA-3984-01 7 100701313 100701313 G A MUC17 Silent p.T4490T 0.13 TCGA-AA-3984-01 7 100701435 100701435 T C MUC17 3'UTR 0.29 TCGA-AA-3984-01 7 100780772 100780772 G A SERPINE1 3'UTR 0.25 TCGA-AA-3984-01 7 101842133 101842133 G T CUX1 Missense_Mutation p.R660I 0.13 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 7 102574404 102574404 C T LRRC17 Missense_Mutation p.A15V 0.16 deleterious(0.02) benign(0.005) TCGA-AA-3984-01 7 102952961 102952961 A C DNAJC2 3'Flank 0.29 TCGA-AA-3984-01 7 102964096 102964096 G T DNAJC2 Missense_Mutation p.S223Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 103018951 103018951 C T SLC26A5 Missense_Mutation p.R576Q 0.28 tolerated(0.07) benign(0.169) TCGA-AA-3984-01 7 103179558 103179558 C T RELN Missense_Mutation p.A2383T 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-AA-3984-01 7 103230055 103230055 G A RELN Missense_Mutation p.S1378F 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-AA-3984-01 7 104753135 104753135 G A KMT2E Silent p.P1644P 0.12 TCGA-AA-3984-01 7 105105785 105105785 G A PUS7 Silent p.F534F 0.31 TCGA-AA-3984-01 7 105182891 105182891 C T RINT1 Nonsense_Mutation p.R104* 0.30 TCGA-AA-3984-01 7 105516266 105516266 T G ATXN7L1 Missense_Mutation p.N81T 0.27 tolerated(0.32) benign(0.244) TCGA-AA-3984-01 7 105664954 105664954 C T CDHR3 Missense_Mutation p.A735V 0.18 tolerated(0.24) benign(0.017) TCGA-AA-3984-01 7 106522569 106522569 G A PIK3CG Missense_Mutation p.R849Q 0.33 tolerated(0.24) benign(0.042) TCGA-AA-3984-01 7 106786828 106786828 C T PRKAR2B Silent p.F221F 0.32 TCGA-AA-3984-01 7 107115287 107115287 C A GPR22 Missense_Mutation p.S261Y 0.08 deleterious(0.01) possibly_damaging(0.876) TCGA-AA-3984-01 7 107323769 107323769 C T SLC26A4 Silent p.I296I 0.09 TCGA-AA-3984-01 7 107671419 107671419 T G LAMB4 Missense_Mutation p.E1608D 0.28 tolerated(0.1) benign(0.164) TCGA-AA-3984-01 7 107678004 107678004 G A LAMB4 Missense_Mutation p.A1503V 0.32 tolerated(0.09) possibly_damaging(0.799) TCGA-AA-3984-01 7 107692544 107692544 G A LAMB4 Missense_Mutation p.A1305V 0.10 tolerated(0.37) benign(0) TCGA-AA-3984-01 7 107791158 107791158 A C NRCAM Intron 0.09 TCGA-AA-3984-01 7 107836259 107836259 C A NRCAM Missense_Mutation p.R470M 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-AA-3984-01 7 108206438 108206438 C A THAP5 Nonsense_Mutation p.E37* 0.38 TCGA-AA-3984-01 7 108524294 108524294 G T C7orf66 Missense_Mutation p.L40I 0.13 tolerated_low_confidence(0.08) possibly_damaging(0.801) TCGA-AA-3984-01 7 112126987 112126987 A G LSMEM1 Missense_Mutation p.D46G 0.31 deleterious(0.04) benign(0.068) TCGA-AA-3984-01 7 112407322 112407322 C A TMEM168 Missense_Mutation p.R675I 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 7 112407342 112407342 A C TMEM168 Silent p.T668T 0.23 TCGA-AA-3984-01 7 113518134 113518134 C T PPP1R3A Missense_Mutation p.E1005K 0.30 deleterious(0.04) probably_damaging(0.91) TCGA-AA-3984-01 7 11485792 11485792 A G THSD7A Missense_Mutation p.V987A 0.27 tolerated(0.15) benign(0.003) TCGA-AA-3984-01 7 115750964 115750964 C A TFEC 5'UTR 0.24 TCGA-AA-3984-01 7 115874657 115874657 G A TES Missense_Mutation p.E33K 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 7 115890540 115890540 G T TES Missense_Mutation p.R231I 0.29 tolerated(0.1) benign(0.013) TCGA-AA-3984-01 7 116140470 116140470 C T CAV2 Missense_Mutation p.L103F 0.31 tolerated(0.09) benign(0.076) TCGA-AA-3984-01 7 116415055 116415055 C T MET Missense_Mutation p.T1068I 0.10 tolerated(0.13) possibly_damaging(0.606) TCGA-AA-3984-01 7 116417479 116417479 A G MET Missense_Mutation p.D1117G 0.23 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 7 116738841 116738841 G A ST7 Intron 0.27 TCGA-AA-3984-01 7 116918197 116918197 C T WNT2 3'UTR 0.29 TCGA-AA-3984-01 7 117235044 117235044 C T CFTR Nonsense_Mutation p.R851* 0.29 TCGA-AA-3984-01 7 117307043 117307043 A C CFTR Missense_Mutation p.S1442R 0.39 tolerated(0.22) benign(0.012) TCGA-AA-3984-01 7 117375451 117375451 G T CTTNBP2 Missense_Mutation p.S1187Y 0.16 deleterious(0.02) benign(0.288) TCGA-AA-3984-01 7 117432204 117432204 G A CTTNBP2 Missense_Mutation p.A349V 0.17 tolerated(0.27) benign(0.005) TCGA-AA-3984-01 7 117450943 117450943 T C CTTNBP2 Missense_Mutation p.D97G 0.21 deleterious(0.04) benign(0.031) TCGA-AA-3984-01 7 120428552 120428552 T G TSPAN12 3'UTR 0.19 TCGA-AA-3984-01 7 120740021 120740021 G A CPED1 Missense_Mutation p.R264Q 0.35 tolerated(0.2) benign(0.003) TCGA-AA-3984-01 7 121653311 121653311 A G PTPRZ1 Missense_Mutation p.H1404R 0.08 tolerated_low_confidence(0.3) benign(0.013) TCGA-AA-3984-01 7 121676711 121676711 A C PTPRZ1 Missense_Mutation p.D1781A 0.18 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 7 122342442 122342442 C A RNF148 Missense_Mutation p.E121D 0.26 tolerated(0.07) benign(0.103) TCGA-AA-3984-01 7 122526053 122526053 C A CADPS2 Missense_Mutation p.K113N 0.29 deleterious(0) possibly_damaging(0.901) TCGA-AA-3984-01 7 122763254 122763254 C A SLC13A1 Nonsense_Mutation p.E426* 0.22 TCGA-AA-3984-01 7 123104957 123104957 C A IQUB Missense_Mutation p.R563I 0.23 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 7 123152251 123152251 T G IQUB Silent p.G48G 0.36 TCGA-AA-3984-01 7 123256420 123256420 C A ASB15 Missense_Mutation p.H55N 0.23 tolerated(0.51) benign(0.001) TCGA-AA-3984-01 7 123269246 123269246 C A ASB15 Missense_Mutation p.L400I 0.32 deleterious(0) probably_damaging(0.968) TCGA-AA-3984-01 7 123508775 123508775 C T HYAL4 Nonsense_Mutation p.R150* 0.29 TCGA-AA-3984-01 7 124387012 124387012 C T GPR37 Missense_Mutation p.R470H 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-AA-3984-01 7 124503600 124503600 C T POT1 Missense_Mutation p.R117H 0.10 deleterious(0.03) possibly_damaging(0.796) TCGA-AA-3984-01 7 127253086 127253086 C A PAX4 Missense_Mutation p.M227I 0.10 tolerated(0.15) benign(0.117) TCGA-AA-3984-01 7 127668605 127668605 T G LRRC4 3'UTR 0.23 TCGA-AA-3984-01 7 127992512 127992512 G A PRRT4 Silent p.H366H 0.30 TCGA-AA-3984-01 7 128546345 128546345 C T AC025594.1 5'Flank 0.29 TCGA-AA-3984-01 7 128807702 128807702 A G TSPAN33 Missense_Mutation p.D280G 0.34 deleterious(0.03) probably_damaging(0.96) TCGA-AA-3984-01 7 128850305 128850305 T G SMO Missense_Mutation p.F523C 0.09 deleterious(0.01) benign(0.102) TCGA-AA-3984-01 7 129855933 129855933 G A SSMEM1 Missense_Mutation p.V120I 0.07 tolerated(0.18) benign(0.031) TCGA-AA-3984-01 7 129948167 129948167 G A CPA4 Silent p.T241T 0.31 TCGA-AA-3984-01 7 129962592 129962592 T C CPA4 3'UTR 0.42 TCGA-AA-3984-01 7 130364109 130364109 C A TSGA13 Missense_Mutation p.D91Y 0.30 deleterious(0) probably_damaging(0.934) TCGA-AA-3984-01 7 131817920 131817920 T C PLXNA4 Missense_Mutation p.D1826G 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 7 131864561 131864561 G A PLXNA4 Silent p.I1253I 0.12 TCGA-AA-3984-01 7 133981195 133981195 C T SLC35B4 Missense_Mutation p.G233R 0.28 deleterious(0.01) benign(0.105) TCGA-AA-3984-01 7 134132761 134132761 C T AKR1B1 Missense_Mutation p.A238T 0.33 tolerated(0.05) possibly_damaging(0.78) TCGA-AA-3984-01 7 134642862 134642862 A C CALD1 Missense_Mutation p.S660R 0.24 deleterious(0) possibly_damaging(0.869) TCGA-AA-3984-01 7 134650072 134650072 G T CALD1 Missense_Mutation p.D771Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 134896162 134896162 C T WDR91 Silent p.E31E 0.26 TCGA-AA-3984-01 7 134943242 134943242 T G STRA8 Nonstop_Mutation p.*331Eext*? 0.33 TCGA-AA-3984-01 7 135098359 135098359 A G CNOT4 Missense_Mutation p.S189P 0.21 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 7 135100001 135100001 C T CNOT4 Missense_Mutation p.R128Q 0.08 tolerated(0.09) possibly_damaging(0.89) TCGA-AA-3984-01 7 135287694 135287694 G A NUP205 Missense_Mutation p.G885E 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-AA-3984-01 7 135433350 135433350 A C FAM180A 5'UTR 0.11 TCGA-AA-3984-01 7 135613785 135613785 G T MTPN 3'UTR 0.11 TCGA-AA-3984-01 7 136700235 136700235 A C CHRM2 Missense_Mutation p.H208P 0.11 deleterious(0) benign(0.024) TCGA-AA-3984-01 7 136701681 136701681 A G CHRM2 3'UTR 0.20 TCGA-AA-3984-01 7 136912750 136912750 T C PTN 3'UTR 0.30 TCGA-AA-3984-01 7 138262238 138262238 C T TRIM24 Nonsense_Mutation p.R721* 0.26 TCGA-AA-3984-01 7 138281185 138281185 C T SVOPL Missense_Mutation p.E482K 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 7 138356788 138356788 A C SVOPL Missense_Mutation p.N83K 0.36 tolerated(0.05) benign(0.315) TCGA-AA-3984-01 7 138444564 138444564 C T ATP6V0A4 Missense_Mutation p.R191Q 0.45 deleterious(0) probably_damaging(0.985) TCGA-AA-3984-01 7 138719365 138719365 C T ZC3HAV1L Missense_Mutation p.S142N 0.21 tolerated(1) benign(0) TCGA-AA-3984-01 7 138732434 138732434 G A ZC3HAV1 Missense_Mutation p.S872L 0.08 tolerated(1) benign(0) TCGA-AA-3984-01 7 138957074 138957074 C T UBN2 Missense_Mutation p.R535C 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 7 13971369 13971369 C T ETV1 Missense_Mutation p.R187H 0.20 tolerated(0.42) probably_damaging(0.99) TCGA-AA-3984-01 7 13971370 13971370 G A ETV1 Missense_Mutation p.R187C 0.10 tolerated(0.07) probably_damaging(0.996) TCGA-AA-3984-01 7 139796751 139796751 T C KDM7A Missense_Mutation p.N705D 0.22 tolerated(1) benign(0) TCGA-AA-3984-01 7 140045725 140045725 G A SLC37A3 Missense_Mutation p.A357V 0.14 deleterious(0.01) possibly_damaging(0.743) TCGA-AA-3984-01 7 140082257 140082257 A G SLC37A3 Missense_Mutation p.F24L 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 140301727 140301727 G T DENND2A Silent p.L157L 0.29 TCGA-AA-3984-01 7 140402782 140402782 G A NDUFB2 Missense_Mutation p.R72H 0.08 tolerated(1) benign(0.029) TCGA-AA-3984-01 7 141646040 141646040 A C CLEC5A Missense_Mutation p.V18G 0.31 deleterious(0) possibly_damaging(0.813) TCGA-AA-3984-01 7 141646111 141646111 G A CLEC5A Intron 0.22 TCGA-AA-3984-01 7 141730192 141730192 G A MGAM Missense_Mutation p.D418N 0.30 tolerated(0.06) benign(0.119) TCGA-AA-3984-01 7 142564009 142564009 T C EPHB6 Missense_Mutation p.V466A 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 142919981 142919981 C A TAS2R40 Silent p.I270I 0.27 TCGA-AA-3984-01 7 143092577 143092577 G A EPHA1 Nonsense_Mutation p.R640* 0.28 TCGA-AA-3984-01 7 143175437 143175437 G T TAS2R41 Nonsense_Mutation p.E158* 0.22 TCGA-AA-3984-01 7 143453394 143453394 T G CTAGE6 Missense_Mutation p.K453T 0.13 tolerated(0.42) benign(0.026) TCGA-AA-3984-01 7 143509969 143509969 A G RP11-61L23.2 RNA 0.18 TCGA-AA-3984-01 7 143748264 143748264 T C OR2A5 Missense_Mutation p.V257A 0.08 tolerated(0.05) benign(0.05) TCGA-AA-3984-01 7 14378254 14378254 A G DGKB Missense_Mutation p.S671P 0.17 deleterious(0) probably_damaging(0.978) TCGA-AA-3984-01 7 143881415 143881415 G T CTAGE4 Missense_Mutation p.L273F 0.33 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 7 144062427 144062427 C T ARHGEF5 Missense_Mutation p.L889F 0.15 deleterious(0) benign(0.019) TCGA-AA-3984-01 7 14661001 14661001 A G DGKB Splice_Site p.X429_splice 0.28 TCGA-AA-3984-01 7 146805321 146805321 C A CNTNAP2 Silent p.V211V 0.10 TCGA-AA-3984-01 7 14733798 14733798 C A DGKB Nonsense_Mutation p.E205* 0.31 TCGA-AA-3984-01 7 147869528 147869528 G A CNTNAP2 Missense_Mutation p.D990N 0.28 deleterious(0.01) probably_damaging(0.965) TCGA-AA-3984-01 7 14793574 14793574 C A DGKB Splice_Site p.X50_splice 0.11 TCGA-AA-3984-01 7 148427219 148427219 C T CUL1 Missense_Mutation p.S2L 0.11 deleterious(0.01) benign(0.014) TCGA-AA-3984-01 7 148705341 148705341 G T PDIA4 Missense_Mutation p.F347L 0.08 tolerated(0.41) benign(0.005) TCGA-AA-3984-01 7 14880845 14880845 A C DGKB Missense_Mutation p.F15C 0.36 deleterious(0) probably_damaging(0.91) TCGA-AA-3984-01 7 148809320 148809320 T C ZNF425 Silent p.E71E 0.35 TCGA-AA-3984-01 7 148809339 148809339 C T ZNF425 Missense_Mutation p.R65K 0.30 tolerated(0.29) benign(0.002) TCGA-AA-3984-01 7 148904529 148904529 G A ZNF282 Missense_Mutation p.E267K 0.28 deleterious(0.03) possibly_damaging(0.8) TCGA-AA-3984-01 7 150174610 150174610 G T GIMAP8 Missense_Mutation p.K580N 0.34 tolerated(0.56) benign(0.011) TCGA-AA-3984-01 7 150325487 150325487 C T GIMAP6 Missense_Mutation p.E67K 0.27 deleterious(0.03) possibly_damaging(0.672) TCGA-AA-3984-01 7 150703538 150703538 G A NOS3 Silent p.E592E 0.10 TCGA-AA-3984-01 7 150732804 150732804 A C ABCB8 Missense_Mutation p.K301T 0.26 tolerated(0.12) benign(0.124) TCGA-AA-3984-01 7 150747872 150747872 G A ASIC3 Missense_Mutation p.D281N 0.27 tolerated(0.34) benign(0.223) TCGA-AA-3984-01 7 150839592 150839592 G A AGAP3 Missense_Mutation p.R715H 0.33 deleterious(0) probably_damaging(0.989) TCGA-AA-3984-01 7 151065005 151065005 G A NUB1 Missense_Mutation p.R373Q 0.22 tolerated(0.33) benign(0.014) TCGA-AA-3984-01 7 151699925 151699925 G T GALNTL5 Missense_Mutation p.R262I 0.32 tolerated(0.12) benign(0.007) TCGA-AA-3984-01 7 152055685 152055685 C T KMT2C Silent p.T79T 0.20 TCGA-AA-3984-01 7 152345999 152345999 G T XRCC2 Missense_Mutation p.L191I 0.18 tolerated(0.27) possibly_damaging(0.873) TCGA-AA-3984-01 7 154876068 154876068 C T HTR5A Silent p.I315I 0.22 TCGA-AA-3984-01 7 155301639 155301639 A G CNPY1 Missense_Mutation p.F32L 0.12 tolerated(0.17) possibly_damaging(0.825) TCGA-AA-3984-01 7 157361617 157361617 A G PTPRN2 Missense_Mutation p.M960T 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 7 158464270 158464270 G A NCAPG2 Missense_Mutation p.S472L 0.14 deleterious(0) possibly_damaging(0.631) TCGA-AA-3984-01 7 158485641 158485641 C T NCAPG2 Missense_Mutation p.S92N 0.24 tolerated(0.29) benign(0) TCGA-AA-3984-01 7 16255805 16255805 A C ISPD Missense_Mutation p.F379L 0.31 tolerated(0.65) benign(0.001) TCGA-AA-3984-01 7 16818629 16818629 G A TSPAN13 Missense_Mutation p.S143N 0.21 tolerated(0.27) benign(0.004) TCGA-AA-3984-01 7 18629967 18629967 G T HDAC9 Missense_Mutation p.Q91H 0.28 deleterious(0) benign(0.346) TCGA-AA-3984-01 7 18993807 18993807 G A HDAC9 Silent p.P992P 0.27 TCGA-AA-3984-01 7 20420428 20420428 G A ITGB8 Missense_Mutation p.A259T 0.26 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 7 20687137 20687137 T C ABCB5 Intron 0.11 TCGA-AA-3984-01 7 20687197 20687197 G A ABCB5 Missense_Mutation p.A341T 0.10 tolerated(0.07) benign(0.005) TCGA-AA-3984-01 7 20706502 20706502 G A ABCB5 Intron 0.25 TCGA-AA-3984-01 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.22 tolerated(0.11) benign(0.16) TCGA-AA-3984-01 7 21627706 21627706 C T DNAH11 Silent p.L579L 0.35 TCGA-AA-3984-01 7 21789352 21789352 C T DNAH11 Silent p.F2917F 0.10 TCGA-AA-3984-01 7 21840765 21840765 G A DNAH11 Missense_Mutation p.R3353Q 0.30 benign(0.005) TCGA-AA-3984-01 7 21932115 21932115 T C DNAH11 Missense_Mutation p.Y4201H 0.14 possibly_damaging(0.793) TCGA-AA-3984-01 7 23358784 23358784 A C IGF2BP3 Silent p.L431L 0.24 TCGA-AA-3984-01 7 23776605 23776605 G T STK31 Nonsense_Mutation p.E309* 0.30 TCGA-AA-3984-01 7 23808689 23808689 T A STK31 Missense_Mutation p.F498I 0.25 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 7 23809301 23809301 G A STK31 Missense_Mutation p.A547T 0.12 tolerated(0.46) benign(0) TCGA-AA-3984-01 7 23826535 23826535 A C STK31 Missense_Mutation p.N827H 0.31 deleterious(0) possibly_damaging(0.637) TCGA-AA-3984-01 7 24689307 24689307 C A MPP6 Missense_Mutation p.S116Y 0.29 deleterious(0.04) benign(0.125) TCGA-AA-3984-01 7 24690173 24690173 C T MPP6 Nonsense_Mutation p.R165* 0.26 TCGA-AA-3984-01 7 2473565 2473565 G A CHST12 3'UTR 0.36 TCGA-AA-3984-01 7 25266339 25266339 G A NPVF Nonsense_Mutation p.Q149* 0.22 TCGA-AA-3984-01 7 26224537 26224537 G A NFE2L3 Missense_Mutation p.D407N 0.12 deleterious(0.01) benign(0.051) TCGA-AA-3984-01 7 27140281 27140281 G T HOXA2 3'UTR 0.28 TCGA-AA-3984-01 7 27168736 27168736 T G HOXA4 3'UTR 0.27 TCGA-AA-3984-01 7 27187366 27187366 C A HOXA6 Translation_Start_Site p.M1? 0.24 deleterious(0) benign(0.38) TCGA-AA-3984-01 7 27219374 27219374 C A RP1-170O19.20 5'UTR 0.22 TCGA-AA-3984-01 7 2752327 2752327 G A AMZ1 Missense_Mutation p.D438N 0.32 tolerated_low_confidence(0.18) benign(0.001) TCGA-AA-3984-01 7 27832709 27832709 G A TAX1BP1 Missense_Mutation p.E430K 0.10 deleterious(0.02) possibly_damaging(0.904) TCGA-AA-3984-01 7 28547292 28547292 C T CREB5 Silent p.S76S 0.30 TCGA-AA-3984-01 7 29966225 29966225 A G SCRN1 Missense_Mutation p.F330S 0.33 deleterious(0) benign(0.282) TCGA-AA-3984-01 7 30174815 30174815 C A MTURN Silent p.L21L 0.30 TCGA-AA-3984-01 7 30638491 30638491 G A GARS Missense_Mutation p.R101H 0.20 tolerated(0.06) benign(0.209) TCGA-AA-3984-01 7 30702339 30702339 C T CRHR2 Missense_Mutation p.R250H 0.12 deleterious(0.01) benign(0.147) TCGA-AA-3984-01 7 31378320 31378320 A G NEUROD6 Missense_Mutation p.F188S 0.29 deleterious(0) possibly_damaging(0.887) TCGA-AA-3984-01 7 31617627 31617627 G A CCDC129 Missense_Mutation p.R276Q 0.15 tolerated(0.65) benign(0.043) TCGA-AA-3984-01 7 33014962 33014962 A G FKBP9 Missense_Mutation p.D179G 0.10 deleterious(0.02) benign(0.008) TCGA-AA-3984-01 7 33195257 33195257 G A BBS9 Missense_Mutation p.E91K 0.32 deleterious(0.04) benign(0.358) TCGA-AA-3984-01 7 33545232 33545232 C T BBS9 Missense_Mutation p.P758L 0.14 deleterious(0) probably_damaging(0.92) TCGA-AA-3984-01 7 35057578 35057578 G A DPY19L1 Silent p.S36S 0.30 TCGA-AA-3984-01 7 35733890 35733890 C T HERPUD2 Silent p.P17P 0.08 TCGA-AA-3984-01 7 36366506 36366506 G A KIAA0895 Missense_Mutation p.R476C 0.27 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 7 36435888 36435888 G A ANLN Missense_Mutation p.R11Q 0.32 deleterious(0) probably_damaging(0.978) TCGA-AA-3984-01 7 36458915 36458915 A C ANLN Missense_Mutation p.N566H 0.07 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 7 36492190 36492190 A C ANLN Missense_Mutation p.K1119T 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-AA-3984-01 7 36580017 36580017 G A AOAH Missense_Mutation p.S405F 0.22 deleterious(0) probably_damaging(0.972) TCGA-AA-3984-01 7 37780110 37780110 C A GPR141 Missense_Mutation p.L39I 0.24 tolerated(0.37) benign(0.428) TCGA-AA-3984-01 7 37916472 37916472 T C NME8 Missense_Mutation p.L286P 0.28 deleterious(0.02) benign(0.392) TCGA-AA-3984-01 7 37927881 37927881 T G NME8 Nonsense_Mutation p.L417* 0.31 TCGA-AA-3984-01 7 38288871 38288871 C A TRGC2 Nonsense_Mutation p.E102* 0.30 TCGA-AA-3984-01 7 39125584 39125584 C T POU6F2 Missense_Mutation p.A48V 0.28 tolerated_low_confidence(0.69) benign(0.166) TCGA-AA-3984-01 7 40133798 40133798 G A CDK13 Missense_Mutation p.R1253Q 0.09 tolerated_low_confidence(0.08) probably_damaging(0.986) TCGA-AA-3984-01 7 40134565 40134565 G A CDK13 Missense_Mutation p.G1509R 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-3984-01 7 4026862 4026862 C A SDK1 Missense_Mutation p.S680Y 0.25 deleterious(0.01) possibly_damaging(0.617) TCGA-AA-3984-01 7 42004654 42004654 G A GLI3 Silent p.R1339R 0.14 TCGA-AA-3984-01 7 42007250 42007250 C T GLI3 Missense_Mutation p.R792Q 0.24 tolerated(0.19) probably_damaging(0.995) TCGA-AA-3984-01 7 42063091 42063091 G A GLI3 Silent p.F491F 0.28 TCGA-AA-3984-01 7 42079723 42079723 G T GLI3 Silent p.P314P 0.21 TCGA-AA-3984-01 7 4267042 4267042 G T SDK1 Intron 0.19 TCGA-AA-3984-01 7 4308209 4308209 C T SDK1 3'UTR 0.25 TCGA-AA-3984-01 7 44149806 44149806 A G AEBP1 Missense_Mutation p.T421A 0.37 tolerated(1) benign(0) TCGA-AA-3984-01 7 44189604 44189604 G A GCK Silent p.V182V 0.26 TCGA-AA-3984-01 7 44425654 44425654 C T NUDCD3 Missense_Mutation p.D348N 0.38 deleterious(0.02) possibly_damaging(0.84) TCGA-AA-3984-01 7 44741173 44741173 G A OGDH Missense_Mutation p.R864H 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 47835623 47835623 T C PKD1L1 Silent p.T2773T 0.27 TCGA-AA-3984-01 7 47859251 47859251 A C C7orf69 3'UTR 0.18 TCGA-AA-3984-01 7 48312549 48312549 G A ABCA13 Missense_Mutation p.D1096N 0.12 benign(0.008) TCGA-AA-3984-01 7 48313215 48313215 G T ABCA13 Nonsense_Mutation p.E1318* 0.22 TCGA-AA-3984-01 7 48314156 48314156 T C ABCA13 Silent p.G1631G 0.28 TCGA-AA-3984-01 7 48314655 48314655 C T ABCA13 Missense_Mutation p.L1798F 0.13 benign(0.263) TCGA-AA-3984-01 7 48318740 48318740 A G ABCA13 Missense_Mutation p.E2650G 0.31 benign(0) TCGA-AA-3984-01 7 48319046 48319046 A C ABCA13 Missense_Mutation p.K2752T 0.09 benign(0.218) TCGA-AA-3984-01 7 48319387 48319387 G T ABCA13 Nonsense_Mutation p.E2866* 0.31 TCGA-AA-3984-01 7 48550725 48550725 G A ABCA13 Missense_Mutation p.A4524T 0.08 possibly_damaging(0.821) TCGA-AA-3984-01 7 48626834 48626834 A C ABCA13 Missense_Mutation p.K4864Q 0.31 probably_damaging(1) TCGA-AA-3984-01 7 4901207 4901207 C T PAPOLB Missense_Mutation p.E78K 0.24 tolerated(0.11) possibly_damaging(0.863) TCGA-AA-3984-01 7 4949628 4949628 G A MMD2 Missense_Mutation p.R165C 0.32 tolerated_low_confidence(0.07) benign(0.002) TCGA-AA-3984-01 7 49977079 49977079 T C ZPBP 3'UTR 0.31 TCGA-AA-3984-01 7 50135723 50135723 C A C7orf72 Silent p.I14I 0.10 TCGA-AA-3984-01 7 50513419 50513419 C A FIGNL1 Nonsense_Mutation p.E523* 0.40 TCGA-AA-3984-01 7 5340264 5340264 A G SLC29A4 Missense_Mutation p.K474R 0.09 tolerated(0.07) benign(0.17) TCGA-AA-3984-01 7 56007536 56007536 G T ZNF713 Missense_Mutation p.R377I 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 57187920 57187920 C A ZNF479 Missense_Mutation p.R401I 0.19 tolerated(0.45) benign(0.039) TCGA-AA-3984-01 7 57194395 57194395 C T ZNF479 Missense_Mutation p.E24K 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-AA-3984-01 7 5780864 5780864 G A RNF216 Missense_Mutation p.R262C 0.08 deleterious_low_confidence(0.02) benign(0.371) TCGA-AA-3984-01 7 5965527 5965527 G A RSPH10B 3'Flank 0.21 TCGA-AA-3984-01 7 5965541 5965541 C A RSPH10B 3'Flank 0.20 TCGA-AA-3984-01 7 5983622 5983622 C A RSPH10B Splice_Site p.X510_splice 0.09 TCGA-AA-3984-01 7 6082580 6082580 C T EIF2AK1 Missense_Mutation p.D259N 0.32 tolerated(0.16) benign(0.004) TCGA-AA-3984-01 7 6189528 6189528 G A USP42 Silent p.S567S 0.09 TCGA-AA-3984-01 7 6210909 6210909 C T CYTH3 Silent p.A162A 0.32 TCGA-AA-3984-01 7 62752348 62752348 C A ZNF733P RNA 0.27 TCGA-AA-3984-01 7 62752431 62752431 C A ZNF733P RNA 0.35 TCGA-AA-3984-01 7 64639757 64639757 A G INTS4L1 RNA 0.07 TCGA-AA-3984-01 7 64643370 64643370 C T INTS4L1 RNA 0.20 TCGA-AA-3984-01 7 65228340 65228340 G A SNORA15 3'Flank 0.14 TCGA-AA-3984-01 7 65429328 65429328 C T GUSB Missense_Mutation p.D591N 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 6547687 6547687 T C GRID2IP Missense_Mutation p.T825A 0.38 tolerated(0.17) benign(0.046) TCGA-AA-3984-01 7 6622957 6622957 G T ZDHHC4 Nonsense_Mutation p.E131* 0.12 TCGA-AA-3984-01 7 66273942 66273942 C T KCTD7 Missense_Mutation p.R383C 0.27 tolerated(0.07) benign(0.041) TCGA-AA-3984-01 7 6639778 6639778 C T C7orf26 Missense_Mutation p.T300M 0.26 tolerated(0.28) benign(0.043) TCGA-AA-3984-01 7 66463885 66463885 G A TYW1 Missense_Mutation p.D73N 0.33 tolerated_low_confidence(0.2) benign(0.002) TCGA-AA-3984-01 7 6662246 6662246 G A ZNF853 Missense_Mutation p.A542T 0.38 deleterious_low_confidence(0.04) benign(0.339) TCGA-AA-3984-01 7 6776841 6776841 C T PMS2CL RNA 0.16 TCGA-AA-3984-01 7 6820439 6820439 G T RSPH10B2 Splice_Site p.X510_splice 0.06 TCGA-AA-3984-01 7 71130516 71130516 G A WBSCR17 Missense_Mutation p.V401I 0.26 deleterious(0.02) probably_damaging(0.939) TCGA-AA-3984-01 7 72023874 72023874 C T TYW1B Splice_Site 0.10 TCGA-AA-3984-01 7 72657511 72657511 C T GTF2IRD2P1 RNA 0.11 TCGA-AA-3984-01 7 72657979 72657979 G A GTF2IRD2P1 RNA 0.11 TCGA-AA-3984-01 7 72891393 72891393 C A BAZ1B Nonsense_Mutation p.E800* 0.09 TCGA-AA-3984-01 7 72987664 72987664 C T TBL2 Missense_Mutation p.G195D 0.32 tolerated(0.17) probably_damaging(0.961) TCGA-AA-3984-01 7 72988406 72988406 T G TBL2 Missense_Mutation p.K103T 0.11 deleterious(0) probably_damaging(0.98) TCGA-AA-3984-01 7 73457479 73457479 G T ELN Silent p.V136V 0.21 TCGA-AA-3984-01 7 7398346 7398346 C T COL28A1 Missense_Mutation p.R1099Q 0.08 tolerated(1) benign(0.275) TCGA-AA-3984-01 7 74212141 74212141 G A GTF2IRD2 Silent p.V570V 0.21 TCGA-AA-3984-01 7 75185447 75185447 G A HIP1 Silent p.F570F 0.24 TCGA-AA-3984-01 7 75192287 75192287 C T HIP1 Silent p.E324E 0.29 TCGA-AA-3984-01 7 75693708 75693708 C T MDH2 Missense_Mutation p.R229W 0.28 deleterious(0.02) possibly_damaging(0.535) TCGA-AA-3984-01 7 76825986 76825986 G A FGL2 Silent p.V310V 0.27 TCGA-AA-3984-01 7 77200425 77200425 A G PTPN12 Missense_Mutation p.T44A 0.31 tolerated(0.18) benign(0.016) TCGA-AA-3984-01 7 77423357 77423357 G A TMEM60 Missense_Mutation p.P112S 0.11 deleterious(0.01) benign(0.034) TCGA-AA-3984-01 7 77885652 77885652 G T MAGI2 Missense_Mutation p.S552Y 0.10 deleterious(0.01) probably_damaging(0.962) TCGA-AA-3984-01 7 79082652 79082652 C T MAGI2 5'UTR 0.16 TCGA-AA-3984-01 7 80458037 80458037 T G SEMA3C Missense_Mutation p.E43A 0.32 tolerated(0.55) benign(0.171) TCGA-AA-3984-01 7 82584625 82584625 T G PCLO Missense_Mutation p.K1882Q 0.20 unknown(0) TCGA-AA-3984-01 7 82586044 82586044 A C PCLO Missense_Mutation p.L1409V 0.09 unknown(0) TCGA-AA-3984-01 7 82785303 82785303 C T PCLO Silent p.P218P 0.23 TCGA-AA-3984-01 7 83022031 83022031 G A SEMA3E Silent p.L503L 0.29 TCGA-AA-3984-01 7 83592584 83592584 C T SEMA3A Silent p.P599P 0.25 TCGA-AA-3984-01 7 87011736 87011736 A G CROT Missense_Mutation p.D421G 0.10 deleterious(0.01) possibly_damaging(0.72) TCGA-AA-3984-01 7 87022069 87022069 C A CROT Missense_Mutation p.L538I 0.10 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 7 87258242 87258242 A G RUNDC3B Missense_Mutation p.N35D 0.27 deleterious(0.01) possibly_damaging(0.844) TCGA-AA-3984-01 7 87514307 87514307 T G DBF4 Missense_Mutation p.F78C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 87537180 87537180 G A DBF4 Missense_Mutation p.R576Q 0.28 deleterious(0) possibly_damaging(0.787) TCGA-AA-3984-01 7 88424128 88424128 C T C7orf62 Silent p.K43K 0.10 TCGA-AA-3984-01 7 89859245 89859245 T G STEAP2 Nonsense_Mutation p.Y360* 0.22 TCGA-AA-3984-01 7 89861989 89861989 T G STEAP2 3'UTR 0.17 TCGA-AA-3984-01 7 89903323 89903323 A C C7orf63 Missense_Mutation p.N295H 0.10 tolerated(0.51) benign(0.01) TCGA-AA-3984-01 7 89936228 89936228 G A C7orf63 Nonsense_Mutation p.W760* 0.30 TCGA-AA-3984-01 7 90043213 90043213 C T CLDN12 3'UTR 0.08 TCGA-AA-3984-01 7 91726201 91726201 C T AKAP9 Missense_Mutation p.R3310W 0.24 possibly_damaging(0.785) TCGA-AA-3984-01 7 91739536 91739536 C A AKAP9 3'UTR 0.23 TCGA-AA-3984-01 7 91980380 91980380 A G ANKIB1 Missense_Mutation p.D401G 0.35 tolerated(0.32) benign(0.206) TCGA-AA-3984-01 7 92404119 92404119 C T CDK6 Missense_Mutation p.R87Q 0.28 tolerated(0.15) probably_damaging(0.98) TCGA-AA-3984-01 7 92732285 92732285 T C SAMD9 Silent p.E1042E 0.30 TCGA-AA-3984-01 7 92734519 92734519 T C SAMD9 Missense_Mutation p.T298A 0.07 tolerated(0.06) benign(0.004) TCGA-AA-3984-01 7 92760534 92760534 A C SAMD9L Missense_Mutation p.I1584S 0.31 deleterious(0) possibly_damaging(0.877) TCGA-AA-3984-01 7 92760588 92760588 G T SAMD9L Missense_Mutation p.S1566Y 0.24 deleterious(0) probably_damaging(0.986) TCGA-AA-3984-01 7 92761259 92761259 T C SAMD9L Silent p.G1342G 0.33 TCGA-AA-3984-01 7 92762803 92762803 G A SAMD9L Nonsense_Mutation p.R828* 0.11 TCGA-AA-3984-01 7 92764271 92764271 A C SAMD9L Missense_Mutation p.N338K 0.22 tolerated(0.64) benign(0.004) TCGA-AA-3984-01 7 93555561 93555561 G T GNG11 3'UTR 0.30 TCGA-AA-3984-01 7 94052273 94052273 T G COL1A2 Missense_Mutation p.I803S 0.20 unknown(0) TCGA-AA-3984-01 7 94167046 94167046 A C CASD1 Missense_Mutation p.Q369P 0.26 tolerated(0.19) benign(0.269) TCGA-AA-3984-01 7 94217981 94217981 T G SGCE Intron 0.35 TCGA-AA-3984-01 7 94293624 94293624 G A PEG10 Silent p.S252S 0.23 TCGA-AA-3984-01 7 94294625 94294625 G T PEG10 3'UTR 0.27 TCGA-AA-3984-01 7 94297032 94297032 C A PEG10 3'UTR 0.08 TCGA-AA-3984-01 7 94297282 94297282 G T PEG10 3'UTR 0.27 TCGA-AA-3984-01 7 94297613 94297613 C A PEG10 3'UTR 0.22 TCGA-AA-3984-01 7 94298987 94298987 G T PEG10 3'UTR 0.22 TCGA-AA-3984-01 7 94539496 94539496 G A PPP1R9A Missense_Mutation p.R24Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 7 94928407 94928407 C T PON1 Missense_Mutation p.R306Q 0.23 tolerated(0.13) benign(0.002) TCGA-AA-3984-01 7 95439789 95439789 G T DYNC1I1 Missense_Mutation p.S65I 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 7 95775865 95775865 T G SLC25A13 Intron 0.32 TCGA-AA-3984-01 7 97363054 97363054 T G TAC1 Missense_Mutation p.F48C 0.26 deleterious(0) probably_damaging(0.959) TCGA-AA-3984-01 7 97369262 97369262 C A TAC1 3'UTR 0.48 TCGA-AA-3984-01 7 97821199 97821199 C T LMTK2 Silent p.F474F 0.33 TCGA-AA-3984-01 7 97939785 97939785 C T BAIAP2L1 Silent p.P309P 0.30 TCGA-AA-3984-01 7 98528257 98528257 C T TRRAP Missense_Mutation p.A1132V 0.31 possibly_damaging(0.688) TCGA-AA-3984-01 7 98602803 98602803 C T TRRAP Missense_Mutation p.R3515W 0.09 probably_damaging(1) TCGA-AA-3984-01 7 98609882 98609882 C T TRRAP Silent p.F3828F 0.34 TCGA-AA-3984-01 7 99128777 99128777 A C ZKSCAN5 Missense_Mutation p.K475N 0.09 deleterious(0.01) possibly_damaging(0.632) TCGA-AA-3984-01 7 99319924 99319924 G T CYP3A7 Silent p.V71V 0.07 TCGA-AA-3984-01 7 99474174 99474174 C T OR2AE1 Silent p.A161A 0.35 TCGA-AA-3984-01 7 99490204 99490204 C A TRIM4 Missense_Mutation p.R362I 0.31 deleterious(0) benign(0.347) TCGA-AA-3984-01 7 99669594 99669594 G A ZNF3 Silent p.S171S 0.29 TCGA-AA-3984-01 7 99697657 99697657 A G MCM7 Missense_Mutation p.F31L 0.09 tolerated(0.48) benign(0.071) TCGA-AA-3984-01 8 101054137 101054137 A G RGS22 Missense_Mutation p.Y611H 0.09 tolerated(0.54) benign(0.001) TCGA-AA-3984-01 8 101190056 101190056 G A SPAG1 Missense_Mutation p.E105K 0.18 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 8 101206463 101206463 G A SPAG1 Missense_Mutation p.G355R 0.09 tolerated(0.29) benign(0) TCGA-AA-3984-01 8 101541899 101541899 G A ANKRD46 Nonsense_Mutation p.R55* 0.39 TCGA-AA-3984-01 8 101648167 101648167 C T SNX31 Missense_Mutation p.A72T 0.09 tolerated(0.13) possibly_damaging(0.658) TCGA-AA-3984-01 8 101730112 101730112 A G PABPC1 Missense_Mutation p.V131A 0.41 tolerated(0.82) benign(0.043) TCGA-AA-3984-01 8 103231120 103231120 A G RRM2B Silent p.F202F 0.16 TCGA-AA-3984-01 8 103266583 103266583 G T UBR5 Missense_Mutation p.L2783I 0.48 deleterious(0) probably_damaging(0.963) TCGA-AA-3984-01 8 103316274 103316274 C T UBR5 Missense_Mutation p.R984Q 0.10 deleterious(0.01) probably_damaging(0.945) TCGA-AA-3984-01 8 103564143 103564143 G A ODF1 Missense_Mutation p.R63H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.52) TCGA-AA-3984-01 8 10396129 10396129 C T PRSS55 Silent p.I295I 0.33 TCGA-AA-3984-01 8 104330836 104330836 A C FZD6 Missense_Mutation p.N66H 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-AA-3984-01 8 104336727 104336727 G A FZD6 Silent p.E131E 0.10 TCGA-AA-3984-01 8 104439410 104439410 G T DCAF13 Missense_Mutation p.R337I 0.19 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 8 104447987 104447987 C T DCAF13 Nonsense_Mutation p.R459* 0.42 TCGA-AA-3984-01 8 10467555 10467555 T G RP1L1 Missense_Mutation p.E1351D 0.38 unknown(0) TCGA-AA-3984-01 8 104778625 104778625 G A RIMS2 Silent p.Q186Q 0.14 TCGA-AA-3984-01 8 104948865 104948865 G A RIMS2 Missense_Mutation p.R821Q 0.23 tolerated_low_confidence(0.07) benign(0.396) TCGA-AA-3984-01 8 105025829 105025829 T C RIMS2 Silent p.P1068P 0.17 TCGA-AA-3984-01 8 105509965 105509965 G A LRP12 Missense_Mutation p.S272F 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 8 10583622 10583622 A G SOX7 Missense_Mutation p.S317P 0.09 tolerated(0.46) benign(0.25) TCGA-AA-3984-01 8 107371805 107371805 C A OXR1 5'UTR 0.12 TCGA-AA-3984-01 8 107773387 107773387 G A ABRA Missense_Mutation p.R342C 0.26 deleterious(0) possibly_damaging(0.857) TCGA-AA-3984-01 8 108264041 108264041 G A ANGPT1 3'UTR 0.45 TCGA-AA-3984-01 8 109001396 109001396 C A RSPO2 Missense_Mutation p.Q57H 0.11 tolerated(0.22) benign(0.001) TCGA-AA-3984-01 8 110099988 110099988 A G TRHR Missense_Mutation p.I83V 0.53 tolerated(0.6) possibly_damaging(0.456) TCGA-AA-3984-01 8 110131518 110131518 A C TRHR Missense_Mutation p.K344T 0.14 tolerated(0.17) benign(0.108) TCGA-AA-3984-01 8 110255202 110255202 C T NUDCD1 3'UTR 0.23 TCGA-AA-3984-01 8 110416909 110416909 C A PKHD1L1 Silent p.I500I 0.08 TCGA-AA-3984-01 8 110451219 110451219 T G PKHD1L1 Missense_Mutation p.L1285R 0.20 deleterious(0.01) possibly_damaging(0.863) TCGA-AA-3984-01 8 110453549 110453549 A C PKHD1L1 Missense_Mutation p.K1382T 0.13 tolerated(0.44) benign(0.007) TCGA-AA-3984-01 8 110491797 110491797 C A PKHD1L1 Missense_Mutation p.S3036Y 0.18 deleterious(0) probably_damaging(0.972) TCGA-AA-3984-01 8 110542429 110542429 T G PKHD1L1 3'UTR 0.38 TCGA-AA-3984-01 8 110563072 110563072 C T EBAG9 Missense_Mutation p.R7W 0.48 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3984-01 8 110576705 110576705 G A EBAG9 Missense_Mutation p.E187K 0.39 deleterious(0) possibly_damaging(0.866) TCGA-AA-3984-01 8 113318264 113318264 G A CSMD3 Silent p.S2681S 0.45 TCGA-AA-3984-01 8 113347673 113347673 G A CSMD3 Silent p.I2350I 0.22 TCGA-AA-3984-01 8 113349922 113349922 G A CSMD3 Nonsense_Mutation p.R2231* 0.38 TCGA-AA-3984-01 8 113402987 113402987 T G CSMD3 Missense_Mutation p.K1947T 0.12 tolerated(0.13) possibly_damaging(0.828) TCGA-AA-3984-01 8 113504848 113504848 A G CSMD3 Silent p.D1716D 0.08 TCGA-AA-3984-01 8 113657379 113657379 G T CSMD3 Missense_Mutation p.S1090Y 0.16 deleterious(0.04) possibly_damaging(0.861) TCGA-AA-3984-01 8 114111092 114111092 G T CSMD3 Silent p.T270T 0.09 TCGA-AA-3984-01 8 116599712 116599712 C T TRPS1 Missense_Mutation p.G739D 0.22 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-AA-3984-01 8 116616197 116616197 A G TRPS1 Missense_Mutation p.S667P 0.08 tolerated_low_confidence(0.19) benign(0) TCGA-AA-3984-01 8 11696193 11696193 C A FDFT1 3'UTR 0.16 TCGA-AA-3984-01 8 117661107 117661107 C T EIF3H Missense_Mutation p.D256N 0.08 deleterious(0) benign(0.175) TCGA-AA-3984-01 8 117783700 117783700 G T UTP23 Missense_Mutation p.Q123H 0.08 tolerated(0.23) benign(0.151) TCGA-AA-3984-01 8 117950517 117950517 G T AARD Missense_Mutation p.R12I 0.20 deleterious(0.04) possibly_damaging(0.883) TCGA-AA-3984-01 8 120598544 120598544 G T ENPP2 Missense_Mutation p.P469T 0.20 deleterious(0.03) possibly_damaging(0.599) TCGA-AA-3984-01 8 120602858 120602858 A G ENPP2 Missense_Mutation p.V417A 0.13 tolerated(1) benign(0.005) TCGA-AA-3984-01 8 121019105 121019105 G T DEPTOR Missense_Mutation p.K329N 0.20 deleterious(0) probably_damaging(0.938) TCGA-AA-3984-01 8 121457451 121457451 G A MRPL13 5'UTR 0.52 TCGA-AA-3984-01 8 124268229 124268229 C T ZHX1 5'UTR 0.10 TCGA-AA-3984-01 8 124346467 124346467 C A ATAD2 Nonsense_Mutation p.E1103* 0.08 TCGA-AA-3984-01 8 124453775 124453775 T G WDYHV1 3'UTR 0.45 TCGA-AA-3984-01 8 124525494 124525494 G A FBXO32 Missense_Mutation p.R199W 0.12 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 8 124707776 124707776 C A ANXA13 Missense_Mutation p.G187V 0.22 deleterious(0) possibly_damaging(0.79) TCGA-AA-3984-01 8 124968310 124968310 G A FER1L6 Silent p.A24A 0.06 TCGA-AA-3984-01 8 125076739 125076739 C T FER1L6 Silent p.V1160V 0.17 TCGA-AA-3984-01 8 125131169 125131169 C T FER1L6 Missense_Mutation p.P1792S 0.21 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 8 125499624 125499624 T G RNF139 Missense_Mutation p.I578M 0.23 deleterious(0) possibly_damaging(0.674) TCGA-AA-3984-01 8 12583292 12583292 G A LONRF1 Nonsense_Mutation p.R703* 0.22 TCGA-AA-3984-01 8 125988946 125988946 C A ZNF572 Missense_Mutation p.H146N 0.07 tolerated(0.42) benign(0.081) TCGA-AA-3984-01 8 125989569 125989569 G T ZNF572 Missense_Mutation p.E353D 0.52 tolerated(0.06) benign(0.003) TCGA-AA-3984-01 8 125989806 125989806 G A ZNF572 Silent p.R432R 0.44 TCGA-AA-3984-01 8 12957935 12957935 G A DLC1 Silent p.F637F 0.28 TCGA-AA-3984-01 8 130859068 130859068 C G FAM49B Missense_Mutation p.G298A 0.11 tolerated(0.14) benign(0.362) TCGA-AA-3984-01 8 130864484 130864484 C T FAM49B Missense_Mutation p.R186Q 0.08 deleterious(0.01) possibly_damaging(0.861) TCGA-AA-3984-01 8 130883632 130883632 C T FAM49B Missense_Mutation p.E62K 0.12 deleterious(0.02) benign(0.269) TCGA-AA-3984-01 8 13357424 13357424 C A DLC1 Missense_Mutation p.D53Y 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.886) TCGA-AA-3984-01 8 133855005 133855005 A G PHF20L1 Missense_Mutation p.D878G 0.42 tolerated(0.17) benign(0.001) TCGA-AA-3984-01 8 133980076 133980076 G A TG Silent p.E1908E 0.12 TCGA-AA-3984-01 8 134072438 134072438 C T SLA Missense_Mutation p.A30T 0.08 tolerated_low_confidence(0.15) benign(0.059) TCGA-AA-3984-01 8 13425160 13425160 T G C8orf48 Silent p.T220T 0.20 TCGA-AA-3984-01 8 136569778 136569778 C T KHDRBS3 Nonsense_Mutation p.R187* 0.23 TCGA-AA-3984-01 8 139727975 139727975 C A COL22A1 Nonsense_Mutation p.E823* 0.36 TCGA-AA-3984-01 8 139845376 139845376 A C COL22A1 Missense_Mutation p.L251V 0.41 unknown(0) TCGA-AA-3984-01 8 140744266 140744266 C T TRAPPC9 Missense_Mutation p.D1177N 0.08 tolerated(1) benign(0.018) TCGA-AA-3984-01 8 142476661 142476661 A C MROH5 Intron 0.25 TCGA-AA-3984-01 8 142484257 142484257 G A MROH5 3'UTR 0.20 TCGA-AA-3984-01 8 143563027 143563027 G T BAI1 Missense_Mutation p.E695D 0.16 tolerated(0.67) possibly_damaging(0.523) TCGA-AA-3984-01 8 143625627 143625627 G A BAI1 Missense_Mutation p.R1535Q 0.08 tolerated(0.09) probably_damaging(0.91) TCGA-AA-3984-01 8 143784314 143784314 A C LY6K Intron 0.10 TCGA-AA-3984-01 8 143784596 143784596 T G LY6K Missense_Mutation p.F102C 0.23 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 8 143994858 143994858 G T CYP11B2 Missense_Mutation p.P322T 0.45 deleterious(0.04) possibly_damaging(0.764) TCGA-AA-3984-01 8 143996635 143996635 C T CYP11B2 Missense_Mutation p.R141Q 0.11 deleterious(0.01) probably_damaging(0.954) TCGA-AA-3984-01 8 14412331 14412331 G A SGCZ Silent p.C48C 0.31 TCGA-AA-3984-01 8 144733632 144733632 G A ZNF623 Silent p.G530G 0.18 TCGA-AA-3984-01 8 144734524 144734524 G A ZNF623 3'UTR 0.43 TCGA-AA-3984-01 8 144992856 144992856 C A PLEC Missense_Mutation p.K3848N 0.13 probably_damaging(1) TCGA-AA-3984-01 8 145152018 145152018 G A CYC1 Missense_Mutation p.R285Q 0.22 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 8 145218679 145218681 AGA - MROH1 5'UTR 0.40 TCGA-AA-3984-01 8 145998981 145998981 G A ZNF34 Silent p.D451D 0.06 TCGA-AA-3984-01 8 146067301 146067301 G T ZNF7 Missense_Mutation p.R270I 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 8 146202106 146202106 C A ZNF252P RNA 0.28 TCGA-AA-3984-01 8 146278777 146278777 T C C8orf33 Silent p.Y166Y 0.11 TCGA-AA-3984-01 8 15601103 15601103 G A TUSC3 Missense_Mutation p.D307N 0.25 tolerated(0.13) possibly_damaging(0.521) TCGA-AA-3984-01 8 16850782 16850782 C A FGF20 Missense_Mutation p.E145D 0.11 deleterious(0) possibly_damaging(0.611) TCGA-AA-3984-01 8 17159766 17159766 C T MTMR7 Missense_Mutation p.R506H 0.30 tolerated(0.09) benign(0.004) TCGA-AA-3984-01 8 17419559 17419559 C T SLC7A2 Silent p.F577F 0.25 TCGA-AA-3984-01 8 17510778 17510778 C A MTUS1 Missense_Mutation p.D1101Y 0.10 deleterious(0) possibly_damaging(0.799) TCGA-AA-3984-01 8 17554810 17554810 C T MTUS1 Intron 0.24 TCGA-AA-3984-01 8 17611976 17611976 C T MTUS1 Silent p.A447A 0.27 TCGA-AA-3984-01 8 17612669 17612669 C T MTUS1 Silent p.T216T 0.19 TCGA-AA-3984-01 8 17726195 17726195 G A FGL1 Missense_Mutation p.S214F 0.38 deleterious(0) probably_damaging(0.941) TCGA-AA-3984-01 8 17796495 17796495 G T PCM1 Nonsense_Mutation p.E197* 0.27 TCGA-AA-3984-01 8 17817534 17817534 A C PCM1 Silent p.A684A 0.31 TCGA-AA-3984-01 8 17829953 17829953 A C PCM1 Missense_Mutation p.K1234Q 0.07 tolerated(0.37) benign(0.184) TCGA-AA-3984-01 8 19276221 19276221 A C CSGALNACT1 Missense_Mutation p.N391K 0.35 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 8 19276238 19276238 G T CSGALNACT1 Missense_Mutation p.L386I 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3984-01 8 19362992 19362992 G A CSGALNACT1 Silent p.A118A 0.25 TCGA-AA-3984-01 8 19694646 19694646 G A INTS10 Silent p.S538S 0.27 TCGA-AA-3984-01 8 21562556 21562556 C T GFRA2 Missense_Mutation p.G329E 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 8 22054770 22054770 C T BMP1 Silent p.F648F 0.39 TCGA-AA-3984-01 8 22136976 22136976 G A PIWIL2 Missense_Mutation p.G26D 0.34 tolerated_low_confidence(0.06) possibly_damaging(0.588) TCGA-AA-3984-01 8 22275305 22275305 C T SLC39A14 Missense_Mutation p.A430V 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 8 22865129 22865129 C A RHOBTB2 Silent p.V479V 0.11 TCGA-AA-3984-01 8 23160838 23160838 G A LOXL2 Silent p.G651G 0.23 TCGA-AA-3984-01 8 23290347 23290347 A G ENTPD4 3'UTR 0.40 TCGA-AA-3984-01 8 23299142 23299142 G A ENTPD4 Silent p.G274G 0.18 TCGA-AA-3984-01 8 23711962 23711962 G A STC1 Silent p.D25D 0.30 TCGA-AA-3984-01 8 24190210 24190210 A G ADAM28 Missense_Mutation p.K440R 0.26 tolerated(0.08) probably_damaging(0.987) TCGA-AA-3984-01 8 24193265 24193265 G A ADAM28 Intron 0.30 TCGA-AA-3984-01 8 24257704 24257704 G A ADAMDEC1 Missense_Mutation p.A345T 0.27 tolerated(0.24) benign(0.125) TCGA-AA-3984-01 8 24261600 24261600 A G ADAMDEC1 Missense_Mutation p.T469A 0.27 tolerated_low_confidence(0.11) benign(0.017) TCGA-AA-3984-01 8 24359010 24359010 G A ADAM7 Missense_Mutation p.G710E 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 8 24365022 24365022 C T ADAM7 Silent p.I746I 0.10 TCGA-AA-3984-01 8 24811819 24811819 C T CTD-2168K21.2 5'Flank 0.25 TCGA-AA-3984-01 8 25253089 25253089 G A DOCK5 Missense_Mutation p.E1520K 0.09 deleterious(0) probably_damaging(0.949) TCGA-AA-3984-01 8 25296837 25296837 G A KCTD9 Missense_Mutation p.R153C 0.08 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 8 26435770 26435770 G T DPYSL2 5'UTR 0.34 TCGA-AA-3984-01 8 26627573 26627573 T C ADRA1A Intron 0.42 TCGA-AA-3984-01 8 27321200 27321200 C T CHRNA2 Missense_Mutation p.D254N 0.31 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 8 27321405 27321405 G A CHRNA2 Silent p.I185I 0.27 TCGA-AA-3984-01 8 27667756 27667756 G A PBK 3'UTR 0.25 TCGA-AA-3984-01 8 27913502 27913502 T G NUGGC Missense_Mutation p.I396L 0.35 tolerated(0.42) benign(0.002) TCGA-AA-3984-01 8 27922170 27922170 G A NUGGC Missense_Mutation p.R264C 0.27 deleterious(0) possibly_damaging(0.718) TCGA-AA-3984-01 8 27964238 27964238 C A ELP3 Silent p.V89V 0.06 TCGA-AA-3984-01 8 28384787 28384787 A C FZD3 Missense_Mutation p.K170N 0.21 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 8 2857478 2857478 A G CSMD1 Splice_Site p.X2735_splice 0.20 TCGA-AA-3984-01 8 28625791 28625791 C T INTS9 Missense_Mutation p.V617I 0.13 tolerated(1) benign(0.019) TCGA-AA-3984-01 8 28695292 28695292 G A INTS9 Missense_Mutation p.T88M 0.46 tolerated(0.12) benign(0.004) TCGA-AA-3984-01 8 28827820 28827820 C T HMBOX1 Missense_Mutation p.S95L 0.06 tolerated(0.37) benign(0.041) TCGA-AA-3984-01 8 28989895 28989895 C T KIF13B Missense_Mutation p.D958N 0.08 tolerated(0.26) benign(0.021) TCGA-AA-3984-01 8 3047634 3047634 A C CSMD1 Missense_Mutation p.V1733G 0.25 probably_damaging(0.986) TCGA-AA-3984-01 8 30657229 30657229 G A PPP2CB Missense_Mutation p.R49C 0.28 deleterious(0.03) benign(0.243) TCGA-AA-3984-01 8 30704174 30704174 G A TEX15 Missense_Mutation p.P787L 0.31 tolerated(0.13) benign(0.061) TCGA-AA-3984-01 8 3072148 3072148 A C CSMD1 Missense_Mutation p.F1580V 0.27 benign(0.287) TCGA-AA-3984-01 8 31004987 31004987 A C WRN Missense_Mutation p.K1189N 0.27 deleterious(0) probably_damaging(0.974) TCGA-AA-3984-01 8 3141850 3141850 G A CSMD1 Silent p.F1323F 0.17 TCGA-AA-3984-01 8 3205650 3205650 C A CSMD1 Missense_Mutation p.G1113V 0.10 probably_damaging(1) TCGA-AA-3984-01 8 3256976 3256976 G T CSMD1 Missense_Mutation p.S781Y 0.21 probably_damaging(0.999) TCGA-AA-3984-01 8 32613974 32613974 G A NRG1 Missense_Mutation p.R291Q 0.18 tolerated(0.24) possibly_damaging(0.806) TCGA-AA-3984-01 8 33247124 33247124 T G FUT10 Missense_Mutation p.E190A 0.27 tolerated(0.23) benign(0.063) TCGA-AA-3984-01 8 35406930 35406930 G C UNC5D Missense_Mutation p.C75S 0.21 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 8 35541073 35541073 G A UNC5D Nonsense_Mutation p.W193* 0.17 TCGA-AA-3984-01 8 35541165 35541165 C T UNC5D Missense_Mutation p.S224L 0.32 tolerated(0.07) possibly_damaging(0.657) TCGA-AA-3984-01 8 35544156 35544156 G T UNC5D Missense_Mutation p.R338I 0.33 deleterious(0.03) possibly_damaging(0.515) TCGA-AA-3984-01 8 35624431 35624431 C A UNC5D Missense_Mutation p.F775L 0.12 deleterious(0) probably_damaging(0.993) TCGA-AA-3984-01 8 35647881 35647881 T G UNC5D Missense_Mutation p.L888V 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 8 36642013 36642013 C A KCNU1 Missense_Mutation p.L29I 0.26 deleterious(0.05) benign(0.266) TCGA-AA-3984-01 8 36664963 36664963 G T KCNU1 Missense_Mutation p.K217N 0.08 deleterious(0) possibly_damaging(0.876) TCGA-AA-3984-01 8 37595460 37595460 T C ERLIN2 Missense_Mutation p.V7A 0.12 tolerated(0.06) benign(0.001) TCGA-AA-3984-01 8 37823658 37823658 G A ADRB3 Silent p.C110C 0.28 TCGA-AA-3984-01 8 38146220 38146220 G A WHSC1L1 Missense_Mutation p.P1096S 0.12 deleterious(0.01) possibly_damaging(0.833) TCGA-AA-3984-01 8 38162828 38162828 C T WHSC1L1 Missense_Mutation p.R793H 0.27 deleterious(0) probably_damaging(0.932) TCGA-AA-3984-01 8 38187135 38187135 G A WHSC1L1 Missense_Mutation p.R448W 0.17 deleterious(0.01) probably_damaging(0.952) TCGA-AA-3984-01 8 38264900 38264900 G A LETM2 Silent p.P397P 0.15 TCGA-AA-3984-01 8 38275887 38275887 G A FGFR1 Missense_Mutation p.S461F 0.24 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 8 38277157 38277157 G A FGFR1 Missense_Mutation p.S424L 0.07 tolerated(0.63) benign(0.017) TCGA-AA-3984-01 8 38285864 38285864 G A FGFR1 Intron 0.28 TCGA-AA-3984-01 8 39666976 39666976 C A ADAM2 Missense_Mutation p.D175Y 0.07 deleterious(0.01) benign(0.284) TCGA-AA-3984-01 8 39780096 39780096 C T IDO1 Missense_Mutation p.R155C 0.14 deleterious(0) probably_damaging(0.942) TCGA-AA-3984-01 8 39782275 39782275 C T IDO1 Missense_Mutation p.R231C 0.26 deleterious(0) probably_damaging(0.988) TCGA-AA-3984-01 8 41545714 41545714 C T ANK1 Silent p.K1447K 0.29 TCGA-AA-3984-01 8 41572509 41572509 C T ANK1 Silent p.P595P 0.09 TCGA-AA-3984-01 8 41577200 41577200 G T ANK1 Silent p.A395A 0.34 TCGA-AA-3984-01 8 41791094 41791094 G A KAT6A Silent p.S1548S 0.10 TCGA-AA-3984-01 8 42022987 42022987 C T AP3M2 Missense_Mutation p.R238C 0.10 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 8 42033629 42033629 C T PLAT Missense_Mutation p.R524H 0.10 tolerated(0.2) benign(0.02) TCGA-AA-3984-01 8 42038121 42038121 C T PLAT Nonsense_Mutation p.W324* 0.19 TCGA-AA-3984-01 8 42231652 42231652 C T DKK4 Missense_Mutation p.R214Q 0.31 tolerated(0.08) benign(0.044) TCGA-AA-3984-01 8 42587039 42587039 G A CHRNB3 Missense_Mutation p.D197N 0.18 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 8 43033237 43033237 C A HGSNAT Missense_Mutation p.S291Y 0.27 deleterious(0) possibly_damaging(0.611) TCGA-AA-3984-01 8 43047512 43047512 C A HGSNAT Missense_Mutation p.A439E 0.26 deleterious(0) possibly_damaging(0.887) TCGA-AA-3984-01 8 48586390 48586390 T G SPIDR Missense_Mutation p.C524W 0.30 deleterious(0.03) possibly_damaging(0.465) TCGA-AA-3984-01 8 48701545 48701545 T G PRKDC Missense_Mutation p.K3607N 0.07 benign(0.008) TCGA-AA-3984-01 8 48762032 48762032 C T PRKDC Silent p.A2345A 0.33 TCGA-AA-3984-01 8 48794518 48794518 G A PRKDC Silent p.L1638L 0.30 TCGA-AA-3984-01 8 48811031 48811031 G A PRKDC Nonsense_Mutation p.R1155* 0.31 TCGA-AA-3984-01 8 48846649 48846649 C T PRKDC Missense_Mutation p.G500D 0.29 benign(0.008) TCGA-AA-3984-01 8 48848329 48848329 T G PRKDC Silent p.A470A 0.32 TCGA-AA-3984-01 8 49637179 49637179 A C EFCAB1 3'UTR 0.30 TCGA-AA-3984-01 8 53049216 53049216 A G ST18 Missense_Mutation p.V745A 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-AA-3984-01 8 53085129 53085129 T G ST18 Missense_Mutation p.K98Q 0.23 tolerated(0.05) benign(0.025) TCGA-AA-3984-01 8 54163347 54163347 A G OPRK1 Missense_Mutation p.I84T 0.22 deleterious(0.01) possibly_damaging(0.811) TCGA-AA-3984-01 8 54792152 54792152 C T RGS20 Missense_Mutation p.S167L 0.19 deleterious_low_confidence(0) benign(0.089) TCGA-AA-3984-01 8 55538301 55538301 C A RP1 Missense_Mutation p.S620Y 0.44 tolerated(0.17) benign(0.08) TCGA-AA-3984-01 8 55541690 55541690 G T RP1 Nonsense_Mutation p.E1750* 0.09 TCGA-AA-3984-01 8 55542510 55542510 A C RP1 Missense_Mutation p.K2023T 0.18 deleterious(0.04) benign(0.372) TCGA-AA-3984-01 8 55542902 55542902 G A RP1 Missense_Mutation p.E2154K 0.37 tolerated(0.23) benign(0) TCGA-AA-3984-01 8 56436102 56436102 C A XKR4 Missense_Mutation p.F423L 0.18 deleterious(0) probably_damaging(0.982) TCGA-AA-3984-01 8 56675551 56675551 C A TMEM68 5'UTR 0.25 TCGA-AA-3984-01 8 56708565 56708565 C T TGS1 Missense_Mutation p.R466W 0.08 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 8 56864653 56864653 G A LYN Missense_Mutation p.D206N 0.18 deleterious(0.01) benign(0.212) TCGA-AA-3984-01 8 56982324 56982324 G A RPS20 Silent p.F134F 0.22 TCGA-AA-3984-01 8 61135236 61135236 C T CA8 Missense_Mutation p.R237Q 0.15 deleterious(0.01) benign(0.024) TCGA-AA-3984-01 8 61768589 61768589 A G CHD7 Missense_Mutation p.K2331R 0.38 probably_damaging(0.952) TCGA-AA-3984-01 8 6296542 6296542 A C MCPH1 Missense_Mutation p.N169H 0.27 tolerated(0.54) possibly_damaging(0.563) TCGA-AA-3984-01 8 63502279 63502279 G C NKAIN3 Missense_Mutation p.V67L 0.47 tolerated(0.2) possibly_damaging(0.612) TCGA-AA-3984-01 8 6371315 6371315 C T ANGPT2 Silent p.S361S 0.15 TCGA-AA-3984-01 8 64087909 64087909 G A YTHDF3 Silent p.S23S 0.05 TCGA-AA-3984-01 8 65494971 65494971 A C BHLHE22 3'UTR 0.10 TCGA-AA-3984-01 8 67012234 67012234 G T DNAJC5B Nonsense_Mutation p.E190* 0.21 TCGA-AA-3984-01 8 67372616 67372616 C T ADHFE1 Silent p.F412F 0.10 TCGA-AA-3984-01 8 67478916 67478916 A C MYBL1 Intron 0.13 TCGA-AA-3984-01 8 67793123 67793123 A C MCMDC2 Missense_Mutation p.K250T 0.08 tolerated(0.19) benign(0.034) TCGA-AA-3984-01 8 67969636 67969636 G A COPS5 Silent p.G184G 0.11 TCGA-AA-3984-01 8 68049694 68049694 C T CSPP1 Missense_Mutation p.R606W 0.13 deleterious(0) possibly_damaging(0.88) TCGA-AA-3984-01 8 68071253 68071253 C T CSPP1 Missense_Mutation p.R802W 0.30 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 8 68116980 68116980 C T ARFGEF1 Missense_Mutation p.D1632N 0.24 tolerated(0.14) probably_damaging(1) TCGA-AA-3984-01 8 68211527 68211527 A T ARFGEF1 Missense_Mutation p.L126I 0.49 tolerated(0.07) probably_damaging(0.974) TCGA-AA-3984-01 8 68423874 68423874 G T CPA6 Missense_Mutation p.L112I 0.48 deleterious(0.01) possibly_damaging(0.841) TCGA-AA-3984-01 8 69358860 69358860 T C C8orf34 Intron 0.33 TCGA-AA-3984-01 8 69621276 69621276 T G C8orf34 Missense_Mutation p.I430R 0.24 tolerated(0.21) benign(0.249) TCGA-AA-3984-01 8 70498702 70498702 C T SULF1 Missense_Mutation p.R175C 0.42 deleterious(0.03) possibly_damaging(0.893) TCGA-AA-3984-01 8 70594480 70594480 C T SLCO5A1 Missense_Mutation p.G574E 0.10 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 8 71040742 71040742 G A NCOA2 Missense_Mutation p.R1203C 0.22 deleterious(0) possibly_damaging(0.893) TCGA-AA-3984-01 8 71060638 71060638 C T NCOA2 Silent p.T825T 0.18 TCGA-AA-3984-01 8 71495488 71495488 C T TRAM1 Missense_Mutation p.R321Q 0.46 tolerated(0.39) benign(0.014) TCGA-AA-3984-01 8 72182051 72182051 A G EYA1 Missense_Mutation p.F325S 0.12 deleterious(0) possibly_damaging(0.469) TCGA-AA-3984-01 8 72964989 72964989 A G TRPA1 Silent p.L552L 0.52 TCGA-AA-3984-01 8 7308268 7308268 C A SPAG11B Missense_Mutation p.E123D 0.17 tolerated_low_confidence(0.33) benign(0) TCGA-AA-3984-01 8 73480273 73480273 T G KCNB2 Missense_Mutation p.F102V 0.06 deleterious(0.02) probably_damaging(0.954) TCGA-AA-3984-01 8 73850089 73850089 C T KCNB2 Silent p.C833C 0.46 TCGA-AA-3984-01 8 74204972 74204972 G A RPL7 Silent p.F25F 0.36 TCGA-AA-3984-01 8 74526182 74526182 C T STAU2 Missense_Mutation p.E230K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 8 74529687 74529687 C A STAU2 Splice_Site p.X137_splice 0.11 TCGA-AA-3984-01 8 74917093 74917093 G T LY96 Nonsense_Mutation p.G59* 0.06 TCGA-AA-3984-01 8 75276519 75276519 G A GDAP1 Missense_Mutation p.V332M 0.15 tolerated(1) benign(0) TCGA-AA-3984-01 8 77618178 77618178 G A ZFHX4 Missense_Mutation p.D619N 0.12 possibly_damaging(0.741) TCGA-AA-3984-01 8 77618318 77618318 G T ZFHX4 Missense_Mutation p.E665D 0.14 benign(0.388) TCGA-AA-3984-01 8 77618657 77618657 C T ZFHX4 Silent p.V778V 0.17 TCGA-AA-3984-01 8 77690641 77690641 C A ZFHX4 Silent p.I1097I 0.46 TCGA-AA-3984-01 8 77765472 77765472 C A ZFHX4 Silent p.L2105L 0.16 TCGA-AA-3984-01 8 77767933 77767933 C T ZFHX4 Missense_Mutation p.R2926W 0.41 probably_damaging(0.995) TCGA-AA-3984-01 8 79652274 79652274 A C IL7 Missense_Mutation p.F64C 0.31 tolerated(0.15) probably_damaging(0.985) TCGA-AA-3984-01 8 82441777 82441777 C T FABP12 Missense_Mutation p.D48N 0.08 tolerated(0.06) benign(0.055) TCGA-AA-3984-01 8 82583228 82583228 G T IMPA1 Missense_Mutation p.T230N 0.26 tolerated(0.16) benign(0.012) TCGA-AA-3984-01 8 82614998 82614998 T C ZFAND1 Missense_Mutation p.N247D 0.28 tolerated(0.11) benign(0.002) TCGA-AA-3984-01 8 86354340 86354340 C T CA3 Missense_Mutation p.R91C 0.12 tolerated(0.13) probably_damaging(0.999) TCGA-AA-3984-01 8 87060823 87060823 C T PSKH2 Silent p.Q342Q 0.18 TCGA-AA-3984-01 8 87242285 87242285 G A SLC7A13 Silent p.F74F 0.43 TCGA-AA-3984-01 8 87755886 87755886 T C CNGB3 5'UTR 0.08 TCGA-AA-3984-01 8 88218352 88218352 T C CNBD1 Missense_Mutation p.L188S 0.24 tolerated(0.22) benign(0.077) TCGA-AA-3984-01 8 88296959 88296959 G A CNBD1 Silent p.S275S 0.23 TCGA-AA-3984-01 8 8865587 8865587 G A ERI1 Silent p.T72T 0.25 TCGA-AA-3984-01 8 89081543 89081543 G A MMP16 Intron 0.17 TCGA-AA-3984-01 8 89081697 89081697 A G MMP16 Intron 0.22 TCGA-AA-3984-01 8 8998967 8998967 G A PPP1R3B Silent p.F65F 0.21 TCGA-AA-3984-01 8 92972361 92972361 T G RUNX1T1 3'UTR 0.14 TCGA-AA-3984-01 8 94747423 94747423 T G RBM12B Missense_Mutation p.N406H 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 8 94800074 94800074 T C TMEM67 Missense_Mutation p.V472A 0.19 deleterious(0.01) benign(0.049) TCGA-AA-3984-01 8 94809370 94809370 A C TMEM67 Missense_Mutation p.Q623H 0.25 tolerated(0.06) probably_damaging(0.972) TCGA-AA-3984-01 8 94937164 94937164 A T PDP1 3'UTR 0.28 TCGA-AA-3984-01 8 95262610 95262610 G T GEM Silent p.I273I 0.42 TCGA-AA-3984-01 8 95264346 95264346 G A GEM Nonsense_Mutation p.R172* 0.19 TCGA-AA-3984-01 8 9537478 9537478 G A TNKS Missense_Mutation p.E338K 0.11 deleterious(0.01) benign(0.277) TCGA-AA-3984-01 8 95448868 95448868 C T FSBP Missense_Mutation p.E77K 0.06 tolerated(0.08) probably_damaging(0.989) TCGA-AA-3984-01 8 95448909 95448909 C T FSBP Missense_Mutation p.R63Q 0.07 deleterious(0.01) probably_damaging(0.988) TCGA-AA-3984-01 8 95523273 95523273 T G KIAA1429 Intron 0.32 TCGA-AA-3984-01 8 95539124 95539124 C T KIAA1429 Missense_Mutation p.A450T 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 8 95543299 95543299 C A KIAA1429 Nonsense_Mutation p.E167* 0.19 TCGA-AA-3984-01 8 95789985 95789985 C T DPY19L4 Nonsense_Mutation p.R516* 0.10 TCGA-AA-3984-01 8 95848845 95848845 G T INTS8 Nonsense_Mutation p.E283* 0.23 TCGA-AA-3984-01 8 95863889 95863889 G A INTS8 Missense_Mutation p.R539H 0.53 deleterious(0.03) probably_damaging(0.96) TCGA-AA-3984-01 8 95942857 95942857 A C TP53INP1 Silent p.P191P 0.07 TCGA-AA-3984-01 8 96047722 96047722 G A NDUFAF6 Missense_Mutation p.R113Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 8 97244160 97244160 G A UQCRB Nonsense_Mutation p.R34* 0.36 TCGA-AA-3984-01 8 97251868 97251868 G T MTERFD1 Missense_Mutation p.L369I 0.15 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 8 97256269 97256269 G A MTERFD1 Nonsense_Mutation p.Q313* 0.45 TCGA-AA-3984-01 8 97847380 97847380 C T CPQ Nonsense_Mutation p.R205* 0.19 TCGA-AA-3984-01 8 98155282 98155282 C A CPQ Missense_Mutation p.F430L 0.20 deleterious(0) probably_damaging(0.941) TCGA-AA-3984-01 8 98900392 98900392 G A MATN2 Missense_Mutation p.E22K 0.13 tolerated(0.69) benign(0.023) TCGA-AA-3984-01 8 98943563 98943563 C A MATN2 Missense_Mutation p.D175E 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 8 99205265 99205265 T G NIPAL2 3'UTR 0.08 TCGA-AA-3984-01 9 100136874 100136874 C T CCDC180 Silent p.L1594L 0.29 TCGA-AA-3984-01 9 100617425 100617425 A C FOXE1 3'UTR 0.29 TCGA-AA-3984-01 9 100617841 100617841 C T FOXE1 3'UTR 0.19 TCGA-AA-3984-01 9 100618112 100618112 G A FOXE1 3'UTR 0.42 TCGA-AA-3984-01 9 100618831 100618832 - T FOXE1 3'UTR 0.22 TCGA-AA-3984-01 9 100991355 100991355 C T TBC1D2 Missense_Mutation p.R286H 0.28 tolerated(0.14) benign(0.013) TCGA-AA-3984-01 9 101151169 101151169 A C GABBR2 Missense_Mutation p.F499C 0.36 tolerated(0.05) probably_damaging(0.978) TCGA-AA-3984-01 9 101513376 101513376 C T ANKS6 Missense_Mutation p.E777K 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 9 101759222 101759222 G A COL15A1 Missense_Mutation p.E271K 0.08 deleterious(0.05) benign(0.165) TCGA-AA-3984-01 9 101984847 101984847 G A SEC61B Missense_Mutation p.G8D 0.18 tolerated(0.13) benign(0.017) TCGA-AA-3984-01 9 102595858 102595858 T G NR4A3 Intron 0.30 TCGA-AA-3984-01 9 102992103 102992103 C T INVS Silent p.C203C 0.08 TCGA-AA-3984-01 9 103002492 103002492 C T INVS Nonsense_Mutation p.R256* 0.22 TCGA-AA-3984-01 9 104075116 104075116 C T LPPR1 Nonsense_Mutation p.R225* 0.10 TCGA-AA-3984-01 9 104356708 104356708 G A PPP3R2 Silent p.L169L 0.25 TCGA-AA-3984-01 9 107332340 107332340 C A OR13C8 Missense_Mutation p.L298M 0.25 deleterious(0.01) possibly_damaging(0.826) TCGA-AA-3984-01 9 107380413 107380413 A G OR13C9 Silent p.L25L 0.28 TCGA-AA-3984-01 9 107547747 107547747 C T ABCA1 Missense_Mutation p.S2192N 0.23 tolerated(0.26) benign(0.005) TCGA-AA-3984-01 9 107555526 107555526 G A ABCA1 Silent p.F1854F 0.27 TCGA-AA-3984-01 9 107562177 107562177 C A ABCA1 Missense_Mutation p.E1622D 0.30 tolerated(0.2) benign(0.005) TCGA-AA-3984-01 9 107599776 107599776 T C ABCA1 Missense_Mutation p.K376R 0.09 deleterious(0.04) benign(0.027) TCGA-AA-3984-01 9 108118531 108118531 A G SLC44A1 Missense_Mutation p.N180S 0.23 tolerated(0.14) benign(0.055) TCGA-AA-3984-01 9 108127880 108127880 G A SLC44A1 Missense_Mutation p.R457Q 0.29 deleterious(0.01) benign(0.405) TCGA-AA-3984-01 9 108147780 108147780 G A SLC44A1 Silent p.P649P 0.26 TCGA-AA-3984-01 9 108380248 108380248 C T FKTN Nonsense_Mutation p.R307* 0.22 TCGA-AA-3984-01 9 109697791 109697791 C T ZNF462 Missense_Mutation p.R2042C 0.15 probably_damaging(0.999) TCGA-AA-3984-01 9 111617472 111617472 C T ACTL7B Missense_Mutation p.D247N 0.43 tolerated(0.38) benign(0.03) TCGA-AA-3984-01 9 111659285 111659285 C T IKBKAP Silent p.K845K 0.30 TCGA-AA-3984-01 9 111662604 111662604 C T IKBKAP Missense_Mutation p.R689Q 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 9 111936664 111936664 A C EPB41L4B 3'UTR 0.50 TCGA-AA-3984-01 9 111965940 111965940 G A EPB41L4B Intron 0.37 TCGA-AA-3984-01 9 112018681 112018681 C T EPB41L4B Missense_Mutation p.V278I 0.30 tolerated(0.4) benign(0.004) TCGA-AA-3984-01 9 112029805 112029805 G A EPB41L4B Nonsense_Mutation p.R161* 0.08 TCGA-AA-3984-01 9 113547861 113547861 A G MUSK Silent p.R547R 0.31 TCGA-AA-3984-01 9 114090391 114090391 C T OR2K2 Missense_Mutation p.G108D 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 9 114145501 114145501 G A KIAA0368 Nonsense_Mutation p.R1443* 0.20 TCGA-AA-3984-01 9 114192894 114192894 T G KIAA0368 Missense_Mutation p.N466T 0.23 deleterious(0.02) benign(0.237) TCGA-AA-3984-01 9 114289976 114289976 C A ZNF483 Missense_Mutation p.L101M 0.40 deleterious(0) possibly_damaging(0.887) TCGA-AA-3984-01 9 114518619 114518619 T G C9orf84 Missense_Mutation p.K219T 0.32 deleterious(0.04) benign(0.124) TCGA-AA-3984-01 9 114548272 114548272 C T C9orf84 5'UTR 0.13 TCGA-AA-3984-01 9 115805778 115805778 C A ZFP37 Nonsense_Mutation p.E374* 0.10 TCGA-AA-3984-01 9 116151902 116151902 G A ALAD Nonsense_Mutation p.R231* 0.36 TCGA-AA-3984-01 9 116779041 116779041 A G ZNF618 Missense_Mutation p.H262R 0.29 tolerated_low_confidence(0.16) probably_damaging(0.999) TCGA-AA-3984-01 9 116811037 116811037 C T ZNF618 Silent p.S392S 0.35 TCGA-AA-3984-01 9 116857319 116857319 C T KIF12 Missense_Mutation p.R230Q 0.17 deleterious(0.01) benign(0.369) TCGA-AA-3984-01 9 117113143 117113143 G A AKNA Nonsense_Mutation p.R1073* 0.30 TCGA-AA-3984-01 9 117118349 117118349 C T AKNA Missense_Mutation p.A972T 0.08 tolerated(0.71) benign(0.009) TCGA-AA-3984-01 9 117240682 117240682 A C DFNB31 Intron 0.26 TCGA-AA-3984-01 9 117266478 117266478 C T DFNB31 Missense_Mutation p.A202T 0.11 tolerated(0.18) possibly_damaging(0.752) TCGA-AA-3984-01 9 117553057 117553057 G A TNFSF15 Missense_Mutation p.S144L 0.30 deleterious(0.01) possibly_damaging(0.686) TCGA-AA-3984-01 9 117666181 117666181 G A TNFSF8 3'UTR 0.11 TCGA-AA-3984-01 9 118997534 118997534 G A PAPPA Missense_Mutation p.E784K 0.33 deleterious(0) benign(0.305) TCGA-AA-3984-01 9 120475660 120475660 C A TLR4 Missense_Mutation p.F418L 0.22 deleterious(0.01) probably_damaging(0.949) TCGA-AA-3984-01 9 123234044 123234044 C T CDK5RAP2 Missense_Mutation p.E614K 0.12 tolerated(0.07) possibly_damaging(0.905) TCGA-AA-3984-01 9 123384983 123384983 C T MEGF9 Missense_Mutation p.R285Q 0.28 tolerated(0.96) benign(0.008) TCGA-AA-3984-01 9 123686002 123686002 C T TRAF1 Missense_Mutation p.R70H 0.30 tolerated(0.57) benign(0.003) TCGA-AA-3984-01 9 124062336 124062336 C A GSN Intron 0.37 TCGA-AA-3984-01 9 125140241 125140241 G A PTGS1 Missense_Mutation p.R53H 0.10 tolerated(0.24) benign(0) TCGA-AA-3984-01 9 125282327 125282327 G T OR1J4 Missense_Mutation p.R303I 0.23 tolerated_low_confidence(0.58) benign(0.006) TCGA-AA-3984-01 9 125316378 125316378 G A OR1N2 Silent p.R310R 0.07 TCGA-AA-3984-01 9 125424627 125424627 T G OR1L1 Missense_Mutation p.F211L 0.28 tolerated(0.25) benign(0.437) TCGA-AA-3984-01 9 125887827 125887827 C T STRBP 3'UTR 0.26 TCGA-AA-3984-01 9 126345478 126345478 G A DENND1A Silent p.F279F 0.26 TCGA-AA-3984-01 9 126794965 126794965 G A LHX2 Silent p.T400T 0.34 TCGA-AA-3984-01 9 127651788 127651788 C T GOLGA1 Missense_Mutation p.E509K 0.12 tolerated(0.1) benign(0.019) TCGA-AA-3984-01 9 127715225 127715225 C T SCAI Missense_Mutation p.R584Q 0.25 tolerated(0.68) benign(0.017) TCGA-AA-3984-01 9 128070167 128070167 G T GAPVD1 Intron 0.26 TCGA-AA-3984-01 9 129453256 129453256 C T LMX1B Silent p.F156F 0.12 TCGA-AA-3984-01 9 129596964 129596964 C A ZBTB43 3'UTR 0.06 TCGA-AA-3984-01 9 129644213 129644213 C A ZBTB34 3'UTR 0.26 TCGA-AA-3984-01 9 129644230 129644230 G T ZBTB34 3'UTR 0.67 TCGA-AA-3984-01 9 129831518 129831518 C T RALGPS1 Nonsense_Mutation p.R165* 0.34 TCGA-AA-3984-01 9 130887704 130887704 C T PTGES2 Missense_Mutation p.R99H 0.19 tolerated(0.27) benign(0.002) TCGA-AA-3984-01 9 130980892 130980892 G T DNM1 Missense_Mutation p.K89N 0.32 deleterious(0) benign(0.36) TCGA-AA-3984-01 9 130986577 130986577 A C DNM1 Missense_Mutation p.K415T 0.18 deleterious(0.02) possibly_damaging(0.804) TCGA-AA-3984-01 9 131133625 131133625 T C URM1 5'UTR 0.31 TCGA-AA-3984-01 9 131196439 131196439 G A CERCAM Missense_Mutation p.S421N 0.08 tolerated(0.34) benign(0.005) TCGA-AA-3984-01 9 131388794 131388794 G A SPTAN1 Missense_Mutation p.R2135H 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-AA-3984-01 9 131485004 131485004 C A ZDHHC12 Intron 0.31 TCGA-AA-3984-01 9 131513726 131513726 G A ZER1 Missense_Mutation p.S335F 0.17 deleterious(0.01) possibly_damaging(0.459) TCGA-AA-3984-01 9 131763997 131763997 C T NUP188 Missense_Mutation p.R1345C 0.35 deleterious(0.03) benign(0.003) TCGA-AA-3984-01 9 13186340 13186340 G T MPDZ Missense_Mutation p.L804I 0.19 tolerated(0.34) benign(0.098) TCGA-AA-3984-01 9 13188956 13188956 G A MPDZ Missense_Mutation p.R731C 0.18 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 9 132719675 132719675 G A FNBP1 Silent p.D159D 0.17 TCGA-AA-3984-01 9 132980195 132980195 C T NCS1 Silent p.F58F 0.13 TCGA-AA-3984-01 9 133779659 133779659 T C FIBCD1 Missense_Mutation p.D393G 0.27 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 9 133884896 133884896 G A LAMC3 Missense_Mutation p.E99K 0.24 deleterious(0.01) possibly_damaging(0.869) TCGA-AA-3984-01 9 134305506 134305506 T G PRRC2B 5'UTR 0.28 TCGA-AA-3984-01 9 134353273 134353273 T C PRRC2B Silent p.L1517L 0.25 TCGA-AA-3984-01 9 134367633 134367633 G A PRRC2B Silent p.S2153S 0.23 TCGA-AA-3984-01 9 134518645 134518645 C T RAPGEF1 Missense_Mutation p.D160N 0.29 tolerated(0.15) benign(0.394) TCGA-AA-3984-01 9 135173631 135173631 C T SETX Missense_Mutation p.E1873K 0.32 tolerated(0.84) benign(0.019) TCGA-AA-3984-01 9 135206710 135206710 C T SETX Missense_Mutation p.A322T 0.25 tolerated(0.09) benign(0.001) TCGA-AA-3984-01 9 135254498 135254498 A G TTF1 Silent p.F804F 0.37 TCGA-AA-3984-01 9 135266053 135266053 T G TTF1 Missense_Mutation p.K718T 0.07 deleterious(0) possibly_damaging(0.694) TCGA-AA-3984-01 9 135759359 135759359 C T C9orf9 Missense_Mutation p.R9C 0.22 deleterious(0.04) benign(0.06) TCGA-AA-3984-01 9 135772716 135772716 C T TSC1 Missense_Mutation p.A944T 0.21 tolerated(0.18) benign(0.102) TCGA-AA-3984-01 9 136253320 136253320 C A C9orf96 Silent p.I128I 0.11 TCGA-AA-3984-01 9 136898678 136898678 G A BRD3 3'UTR 0.23 TCGA-AA-3984-01 9 137721846 137721846 G T COL5A1 Nonsense_Mutation p.E1698* 0.29 TCGA-AA-3984-01 9 137801885 137801885 G T FCN1 Missense_Mutation p.S247Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 9 137806253 137806253 C A FCN1 Missense_Mutation p.E95D 0.29 tolerated(0.55) benign(0.009) TCGA-AA-3984-01 9 138393775 138393775 C T MRPS2 Silent p.F85F 0.14 TCGA-AA-3984-01 9 138517938 138517938 G A GLT6D1 Silent p.G78G 0.10 TCGA-AA-3984-01 9 138556062 138556062 A G LCN9 Missense_Mutation p.K51E 0.19 tolerated(1) benign(0.02) TCGA-AA-3984-01 9 138646970 138646970 T G KCNT1 Silent p.A165A 0.45 TCGA-AA-3984-01 9 138742231 138742231 T G CAMSAP1 Missense_Mutation p.E295D 0.24 tolerated(0.08) possibly_damaging(0.515) TCGA-AA-3984-01 9 139290148 139290148 T G SNAPC4 Missense_Mutation p.E84D 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 9 139347907 139347907 T G SEC16A Missense_Mutation p.E2044D 0.26 tolerated(0.13) benign(0.027) TCGA-AA-3984-01 9 139369518 139369518 C T SEC16A Silent p.S850S 0.32 TCGA-AA-3984-01 9 139564681 139564681 G A EGFL7 Missense_Mutation p.G157D 0.38 deleterious(0.02) probably_damaging(1) TCGA-AA-3984-01 9 139887386 139887386 T G C9orf142 Missense_Mutation p.F64V 0.31 tolerated(0.21) benign(0.164) TCGA-AA-3984-01 9 140249195 140249195 C T EXD3 Missense_Mutation p.R263H 0.27 tolerated(0.68) benign(0.032) TCGA-AA-3984-01 9 140510481 140510481 G A C9orf37 Silent p.F57F 0.27 TCGA-AA-3984-01 9 140901264 140901264 G A CACNA1B Missense_Mutation p.E674K 0.09 tolerated(0.36) benign(0.163) TCGA-AA-3984-01 9 14150223 14150223 C A NFIB Nonsense_Mutation p.E243* 0.19 TCGA-AA-3984-01 9 14618918 14618918 C T ZDHHC21 3'UTR 0.30 TCGA-AA-3984-01 9 14737330 14737330 T G FREM1 3'UTR 0.37 TCGA-AA-3984-01 9 14747026 14747026 C T FREM1 Silent p.K2011K 0.26 TCGA-AA-3984-01 9 14776044 14776044 C T FREM1 Missense_Mutation p.D1534N 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 9 14806758 14806758 C A FREM1 Missense_Mutation p.D1059Y 0.14 deleterious(0) benign(0.091) TCGA-AA-3984-01 9 15186968 15186968 C T TTC39B Silent p.T487T 0.08 TCGA-AA-3984-01 9 15465536 15465536 A C PSIP1 Missense_Mutation p.D525E 0.30 tolerated_low_confidence(0.59) benign(0.001) TCGA-AA-3984-01 9 15591451 15591451 G T CCDC171 Missense_Mutation p.R147I 0.28 deleterious(0) possibly_damaging(0.61) TCGA-AA-3984-01 9 15678755 15678755 G T CCDC171 Splice_Site p.X359_splice 0.24 TCGA-AA-3984-01 9 16419065 16419065 A C BNC2 Missense_Mutation p.F1074L 0.18 deleterious(0) probably_damaging(0.97) TCGA-AA-3984-01 9 16437090 16437090 C T BNC2 Missense_Mutation p.E368K 0.28 tolerated(0.8) possibly_damaging(0.461) TCGA-AA-3984-01 9 18635985 18635985 C T ADAMTSL1 Missense_Mutation p.R216C 0.27 deleterious(0) probably_damaging(0.957) TCGA-AA-3984-01 9 19058131 19058131 C T HAUS6 Silent p.T878T 0.26 TCGA-AA-3984-01 9 19058868 19058868 C A HAUS6 Nonsense_Mutation p.E633* 0.30 TCGA-AA-3984-01 9 19346106 19346106 G A DENND4C Silent p.S1064S 0.21 TCGA-AA-3984-01 9 19576994 19576994 G A SLC24A2 Missense_Mutation p.L386F 0.28 deleterious(0.02) benign(0.064) TCGA-AA-3984-01 9 21480935 21480935 T C IFNE 3'UTR 0.50 TCGA-AA-3984-01 9 21481404 21481404 G T IFNE Missense_Mutation p.S97Y 0.27 deleterious(0) possibly_damaging(0.768) TCGA-AA-3984-01 9 2182150 2182150 C T SMARCA2 Missense_Mutation p.R1457C 0.30 probably_damaging(0.911) TCGA-AA-3984-01 9 23704920 23704920 G A ELAVL2 Silent p.V161V 0.23 TCGA-AA-3984-01 9 27228260 27228260 C T TEK Missense_Mutation p.A1086V 0.25 deleterious(0.01) possibly_damaging(0.706) TCGA-AA-3984-01 9 27289673 27289673 G A EQTN Missense_Mutation p.P160S 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-AA-3984-01 9 27524755 27524755 G T IFNK Nonsense_Mutation p.E141* 0.24 TCGA-AA-3984-01 9 32405561 32405561 G T ACO1 Missense_Mutation p.K19N 0.21 tolerated(0.22) benign(0.265) TCGA-AA-3984-01 9 32542101 32542101 C T TOPORS Missense_Mutation p.E808K 0.30 tolerated_low_confidence(0.53) unknown(0) TCGA-AA-3984-01 9 32543329 32543329 C T TOPORS Silent p.E398E 0.31 TCGA-AA-3984-01 9 32543744 32543744 C T TOPORS Missense_Mutation p.R260Q 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-AA-3984-01 9 3263051 3263051 G A RFX3 Nonsense_Mutation p.R497* 0.18 TCGA-AA-3984-01 9 32785859 32785859 T G TMEM215 3'UTR 0.25 TCGA-AA-3984-01 9 33548836 33548836 G T ANKRD18B Nonsense_Mutation p.E622* 0.32 TCGA-AA-3984-01 9 33676610 33676610 T G PTENP1 RNA 0.30 TCGA-AA-3984-01 9 339015 339015 C T DOCK8 Missense_Mutation p.R478C 0.19 deleterious(0) probably_damaging(0.932) TCGA-AA-3984-01 9 34098342 34098342 C T DCAF12 Missense_Mutation p.A259T 0.25 deleterious(0.03) benign(0.012) TCGA-AA-3984-01 9 34489355 34489355 A G DNAI1 Missense_Mutation p.Q99R 0.28 deleterious(0.02) possibly_damaging(0.623) TCGA-AA-3984-01 9 34556288 34556288 G A CNTFR Missense_Mutation p.R245C 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 9 34627701 34627701 A C ARID3C Missense_Mutation p.F104C 0.09 deleterious(0.01) probably_damaging(0.989) TCGA-AA-3984-01 9 34724519 34724519 A G FAM205A Silent p.I906I 0.30 TCGA-AA-3984-01 9 34832647 34832647 A C FAM205B RNA 0.25 TCGA-AA-3984-01 9 34977179 34977179 C T KIAA1045 Missense_Mutation p.R317C 0.24 deleterious(0.01) possibly_damaging(0.59) TCGA-AA-3984-01 9 35045333 35045333 C T C9orf131 Missense_Mutation p.P903S 0.31 tolerated(0.6) benign(0.002) TCGA-AA-3984-01 9 35062005 35062005 C T VCP Missense_Mutation p.R359Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 9 35091815 35091815 C T PIGO Missense_Mutation p.R690H 0.27 tolerated(1) benign(0.001) TCGA-AA-3984-01 9 35092601 35092601 A G PIGO Missense_Mutation p.L428P 0.28 deleterious(0) possibly_damaging(0.594) TCGA-AA-3984-01 9 35099974 35099974 C T STOML2 3'UTR 0.24 TCGA-AA-3984-01 9 35685107 35685107 C T TPM2 Missense_Mutation p.R198Q 0.25 deleterious(0.04) benign(0.038) TCGA-AA-3984-01 9 35699366 35699366 A G TLN1 Silent p.A2287A 0.28 TCGA-AA-3984-01 9 35710882 35710882 G A TLN1 Missense_Mutation p.T1372M 0.12 tolerated(0.25) possibly_damaging(0.6) TCGA-AA-3984-01 9 35725629 35725629 C T TLN1 Silent p.P21P 0.33 TCGA-AA-3984-01 9 35749852 35749852 G A RGP1 Missense_Mutation p.A34T 0.37 tolerated(0.47) benign(0.02) TCGA-AA-3984-01 9 35825363 35825363 T G FAM221B Silent p.T202T 0.22 TCGA-AA-3984-01 9 36083412 36083412 T C RECK Missense_Mutation p.Y164H 0.07 tolerated(0.22) benign(0.174) TCGA-AA-3984-01 9 36117153 36117153 C A RECK Silent p.L744L 0.13 TCGA-AA-3984-01 9 36198978 36198978 A C CLTA Missense_Mutation p.E86D 0.34 tolerated(0.06) benign(0.05) TCGA-AA-3984-01 9 37126348 37126348 G A ZCCHC7 Missense_Mutation p.E7K 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 9 37501715 37501715 G A POLR1E Missense_Mutation p.R325Q 0.09 tolerated(1) benign(0.006) TCGA-AA-3984-01 9 37745910 37745910 C A FRMPD1 Missense_Mutation p.S1294Y 0.12 deleterious(0) possibly_damaging(0.907) TCGA-AA-3984-01 9 39085982 39085982 G T CNTNAP3 Intron 0.11 TCGA-AA-3984-01 9 39176055 39176055 G A CNTNAP3 Missense_Mutation p.S321L 0.28 tolerated(0.05) benign(0.048) TCGA-AA-3984-01 9 3937084 3937084 T G GLIS3 Missense_Mutation p.K606Q 0.25 deleterious(0) probably_damaging(0.986) TCGA-AA-3984-01 9 40772402 40772402 C A ZNF658 Missense_Mutation p.R958I 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 9 40773183 40773183 T G ZNF658 Missense_Mutation p.N698H 0.15 tolerated(0.12) benign(0.018) TCGA-AA-3984-01 9 4286064 4286064 C T GLIS3 Missense_Mutation p.S121N 0.36 tolerated(1) benign(0) TCGA-AA-3984-01 9 4544619 4544619 G A SLC1A1 Silent p.E48E 0.10 TCGA-AA-3984-01 9 4664489 4664489 T G PPAPDC2 3'UTR 0.35 TCGA-AA-3984-01 9 4666346 4666346 A C SPATA6L Intron 0.23 TCGA-AA-3984-01 9 4697856 4697856 C T CDC37L1 Missense_Mutation p.R242C 0.27 deleterious(0) probably_damaging(0.984) TCGA-AA-3984-01 9 5021966 5021966 A C JAK2 5'UTR 0.22 TCGA-AA-3984-01 9 5055687 5055687 G A JAK2 Missense_Mutation p.D319N 0.21 tolerated(0.06) probably_damaging(0.955) TCGA-AA-3984-01 9 5072613 5072613 G T JAK2 Missense_Mutation p.R588I 0.24 deleterious(0) probably_damaging(0.98) TCGA-AA-3984-01 9 5231474 5231474 T C INSL4 5'UTR 0.27 TCGA-AA-3984-01 9 5457399 5457399 C T CD274 Nonsense_Mutation p.R125* 0.29 TCGA-AA-3984-01 9 5570031 5570031 C T PDCD1LG2 3'UTR 0.22 TCGA-AA-3984-01 9 5772740 5772740 C T KIAA1432 Missense_Mutation p.R1265W 0.44 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 9 5830851 5830851 G T ERMP1 Missense_Mutation p.F172L 0.12 deleterious(0) possibly_damaging(0.636) TCGA-AA-3984-01 9 5920513 5920513 G T KIAA2026 Missense_Mutation p.S1828Y 0.30 deleterious(0) possibly_damaging(0.698) TCGA-AA-3984-01 9 5920717 5920717 T C KIAA2026 Missense_Mutation p.N1760S 0.26 tolerated(0.57) benign(0.04) TCGA-AA-3984-01 9 5924739 5924739 C A KIAA2026 Missense_Mutation p.D869Y 0.29 deleterious(0) possibly_damaging(0.568) TCGA-AA-3984-01 9 5969252 5969252 C T KIAA2026 Missense_Mutation p.E327K 0.28 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 9 67968384 67968384 C A ANKRD20A1 Missense_Mutation p.S648Y 0.05 tolerated(0.63) possibly_damaging(0.608) TCGA-AA-3984-01 9 6814685 6814685 G T KDM4C Missense_Mutation p.K125N 0.24 deleterious(0) possibly_damaging(0.583) TCGA-AA-3984-01 9 70919825 70919825 C T FOXD4L3 3'UTR 0.13 TCGA-AA-3984-01 9 70919832 70919832 T G FOXD4L3 3'UTR 0.11 TCGA-AA-3984-01 9 71094385 71094385 T C PGM5 Missense_Mutation p.L404P 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 9 712298 712298 T C KANK1 Missense_Mutation p.V511A 0.24 tolerated(0.06) benign(0.005) TCGA-AA-3984-01 9 712347 712347 C T KANK1 Silent p.V527V 0.32 TCGA-AA-3984-01 9 72056023 72056023 C A APBA1 Missense_Mutation p.K730N 0.26 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 9 72897462 72897462 A G SMC5 Missense_Mutation p.N315S 0.25 tolerated(0.52) benign(0.004) TCGA-AA-3984-01 9 73028015 73028015 G A KLF9 Missense_Mutation p.P89S 0.16 tolerated(0.52) benign(0.001) TCGA-AA-3984-01 9 73150819 73150819 G T TRPM3 3'UTR 0.27 TCGA-AA-3984-01 9 73213472 73213472 G A TRPM3 Missense_Mutation p.R959C 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 9 74345136 74345136 G T TMEM2 Missense_Mutation p.H603N 0.25 deleterious(0.01) possibly_damaging(0.882) TCGA-AA-3984-01 9 74477431 74477431 A C ABHD17B 3'UTR 0.37 TCGA-AA-3984-01 9 745260 745260 A G KANK1 3'UTR 0.16 TCGA-AA-3984-01 9 75404098 75404098 C A TMC1 Missense_Mutation p.F363L 0.34 tolerated(0.05) probably_damaging(0.998) TCGA-AA-3984-01 9 75516103 75516103 C T ALDH1A1 3'UTR 0.25 TCGA-AA-3984-01 9 78968976 78968976 C T PCSK5 Missense_Mutation p.H1672Y 0.30 tolerated(0.05) benign(0.03) TCGA-AA-3984-01 9 79120954 79120954 C A GCNT1 3'UTR 0.26 TCGA-AA-3984-01 9 79936594 79936594 G A VPS13A Missense_Mutation p.R1921Q 0.24 tolerated(0.29) benign(0.018) TCGA-AA-3984-01 9 79952237 79952237 G T VPS13A Missense_Mutation p.E2054D 0.11 tolerated(0.18) benign(0.02) TCGA-AA-3984-01 9 80863775 80863775 C T CEP78 Missense_Mutation p.A352V 0.09 deleterious(0.02) probably_damaging(0.994) TCGA-AA-3984-01 9 80866877 80866877 G T CEP78 Nonsense_Mutation p.E376* 0.34 TCGA-AA-3984-01 9 80879182 80879182 G T CEP78 Missense_Mutation p.E526D 0.17 deleterious(0) probably_damaging(0.987) TCGA-AA-3984-01 9 8484375 8484375 G T PTPRD Missense_Mutation p.L1053I 0.35 tolerated(0.21) benign(0.443) TCGA-AA-3984-01 9 8485294 8485294 A G PTPRD Missense_Mutation p.V1029A 0.08 tolerated(0.61) probably_damaging(0.974) TCGA-AA-3984-01 9 85616037 85616037 C T RASEF Missense_Mutation p.R404H 0.17 tolerated(0.56) benign(0.013) TCGA-AA-3984-01 9 86300963 86300963 A G UBQLN1 Silent p.I96I 0.23 TCGA-AA-3984-01 9 86584306 86584306 G T HNRNPK 3'UTR 0.29 TCGA-AA-3984-01 9 86615974 86615974 A G RMI1 Missense_Mutation p.M25V 0.26 tolerated(0.23) benign(0.001) TCGA-AA-3984-01 9 86616839 86616839 A C RMI1 Missense_Mutation p.D313A 0.30 deleterious(0) possibly_damaging(0.788) TCGA-AA-3984-01 9 86617326 86617326 G T RMI1 Missense_Mutation p.E475D 0.28 tolerated(0.09) benign(0.01) TCGA-AA-3984-01 9 86905076 86905076 G T SLC28A3 Missense_Mutation p.S381Y 0.29 deleterious(0) probably_damaging(0.968) TCGA-AA-3984-01 9 87285819 87285819 C T NTRK2 Silent p.I52I 0.22 TCGA-AA-3984-01 9 8733794 8733794 C T PTPRD Missense_Mutation p.R17H 0.13 tolerated(0.54) benign(0) TCGA-AA-3984-01 9 88881095 88881095 A C ISCA1 Missense_Mutation p.F85V 0.09 tolerated(0.18) benign(0.248) TCGA-AA-3984-01 9 90283585 90283585 G A DAPK1 Missense_Mutation p.R666Q 0.34 deleterious(0.03) benign(0.014) TCGA-AA-3984-01 9 90585738 90585738 G T CDK20 Silent p.V151V 0.21 TCGA-AA-3984-01 9 90588944 90588944 C T CDK20 Missense_Mutation p.E28K 0.25 tolerated(0.25) benign(0.037) TCGA-AA-3984-01 9 91159333 91159333 G A NXNL2 Silent p.K114K 0.29 TCGA-AA-3984-01 9 91266920 91266920 G T RP13-60M5.2 RNA 0.24 TCGA-AA-3984-01 9 91949596 91949596 C T SECISBP2 Missense_Mutation p.S347L 0.11 tolerated(0.09) benign(0.019) TCGA-AA-3984-01 9 94821461 94821461 C A SPTLC1 Missense_Mutation p.K230N 0.32 deleterious(0.02) possibly_damaging(0.872) TCGA-AA-3984-01 9 95152322 95152322 G A OGN Silent p.L148L 0.17 TCGA-AA-3984-01 9 95264904 95264904 C A ECM2 Nonsense_Mutation p.E499* 0.09 TCGA-AA-3984-01 9 95400505 95400505 C T IPPK Missense_Mutation p.E232K 0.13 deleterious(0.02) benign(0.15) TCGA-AA-3984-01 9 96018611 96018611 C T WNK2 Missense_Mutation p.P689S 0.25 unknown(0) TCGA-AA-3984-01 9 96292021 96292021 G T FAM120A Intron 0.08 TCGA-AA-3984-01 9 96870342 96870342 T G PTPDC1 3'UTR 0.20 TCGA-AA-3984-01 9 96941124 96941124 G A MIRLET7D RNA 0.30 TCGA-AA-3984-01 9 97864002 97864002 C T FANCC Missense_Mutation p.R555Q 0.31 tolerated(0.59) benign(0) TCGA-AA-3984-01 9 98643394 98643394 G A ERCC6L2 Missense_Mutation p.R108Q 0.16 tolerated(0.51) benign(0.002) TCGA-AA-3984-01 9 98774801 98774801 T G ERCC6L2 Missense_Mutation p.I295M 0.23 tolerated(0.25) benign(0.165) TCGA-AA-3984-01 9 99006625 99006625 C A HSD17B3 Nonsense_Mutation p.E220* 0.30 TCGA-AA-3984-01 9 99327714 99327714 A G CDC14B Missense_Mutation p.V71A 0.23 tolerated(0.09) benign(0.002) TCGA-AA-3984-01 9 99413723 99413723 C A AAED1 Nonsense_Mutation p.E124* 0.40 TCGA-AA-3984-01 9 99521337 99521337 C A ZNF510 Missense_Mutation p.R592I 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 9 99721168 99721168 T G HIATL2 Missense_Mutation p.E72D 0.30 tolerated(0.22) benign(0.034) TCGA-AA-3984-01 X 10035413 10035413 G A WWC3 Missense_Mutation p.A35T 0.44 deleterious(0) probably_damaging(0.99) TCGA-AA-3984-01 X 100490892 100490892 C A DRP2 Missense_Mutation p.A54D 0.28 deleterious_low_confidence(0) benign(0.016) TCGA-AA-3984-01 X 100531400 100531400 C A TAF7L Nonsense_Mutation p.E356* 0.09 TCGA-AA-3984-01 X 100538535 100538535 A G TAF7L Missense_Mutation p.V147A 0.06 deleterious(0.04) probably_damaging(0.969) TCGA-AA-3984-01 X 100601443 100601443 C A TIMM8A 3'UTR 0.25 TCGA-AA-3984-01 X 100611203 100611203 C T BTK Missense_Mutation p.R468H 0.21 tolerated(0.4) benign(0.027) TCGA-AA-3984-01 X 100653459 100653459 G A GLA Missense_Mutation p.L300F 0.15 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 100656528 100656528 T C RPL36A-HNRNPH2 Intron 0.58 TCGA-AA-3984-01 X 100658854 100658854 C T GLA Missense_Mutation p.R105K 0.17 tolerated(0.17) benign(0.012) TCGA-AA-3984-01 X 100667312 100667312 C T HNRNPH2 Silent p.F112F 0.20 TCGA-AA-3984-01 X 100809028 100809028 A C ARMCX1 Missense_Mutation p.E372A 0.13 tolerated(0.07) possibly_damaging(0.579) TCGA-AA-3984-01 X 100880443 100880443 T C ARMCX3 Silent p.I158I 0.17 TCGA-AA-3984-01 X 100911416 100911416 C T ARMCX2 Missense_Mutation p.D387N 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-AA-3984-01 X 101098222 101098222 G A NXF5 5'UTR 0.14 TCGA-AA-3984-01 X 101139185 101139185 G A ZMAT1 Missense_Mutation p.A405V 0.17 deleterious(0) benign(0.424) TCGA-AA-3984-01 X 101139581 101139581 G A ZMAT1 Missense_Mutation p.P273L 0.40 deleterious(0) probably_damaging(0.915) TCGA-AA-3984-01 X 101139622 101139622 G A ZMAT1 Silent p.V259V 0.22 TCGA-AA-3984-01 X 101395478 101395478 T G TCEAL6 3'UTR 0.41 TCGA-AA-3984-01 X 101396161 101396161 C T TCEAL6 Missense_Mutation p.R48Q 0.07 tolerated(0.25) benign(0.32) TCGA-AA-3984-01 X 10176427 10176427 G A CLCN4 Missense_Mutation p.E396K 0.44 tolerated(0.16) benign(0.086) TCGA-AA-3984-01 X 101822047 101822047 C A NXF4 RNA 0.12 TCGA-AA-3984-01 X 101857647 101857647 C T ARMCX5 Missense_Mutation p.S193F 0.05 deleterious(0) benign(0.086) TCGA-AA-3984-01 X 101909922 101909922 G T GPRASP1 Nonsense_Mutation p.E361* 0.29 TCGA-AA-3984-01 X 101911587 101911587 G T GPRASP1 Nonsense_Mutation p.E916* 0.44 TCGA-AA-3984-01 X 101912260 101912260 C T GPRASP1 Missense_Mutation p.S1140L 0.22 deleterious(0) benign(0.007) TCGA-AA-3984-01 X 101912590 101912590 A G GPRASP1 Missense_Mutation p.D1250G 0.47 tolerated(0.1) benign(0.381) TCGA-AA-3984-01 X 101913129 101913129 A C GPRASP1 3'UTR 0.17 TCGA-AA-3984-01 X 101971384 101971384 G T GPRASP2 Missense_Mutation p.K529N 0.08 tolerated(0.07) benign(0.039) TCGA-AA-3984-01 X 102006047 102006047 G T BHLHB9 3'UTR 0.40 TCGA-AA-3984-01 X 102007006 102007006 A C BHLHB9 3'UTR 0.09 TCGA-AA-3984-01 X 102318039 102318039 A G BEX1 Missense_Mutation p.V55A 0.41 tolerated(0.21) benign(0.019) TCGA-AA-3984-01 X 102612899 102612899 G A WBP5 Missense_Mutation p.R96Q 0.19 deleterious(0.02) benign(0.082) TCGA-AA-3984-01 X 102842510 102842510 A C TCEAL4 3'UTR 0.47 TCGA-AA-3984-01 X 103219119 103219119 G A TMSB15B Silent p.S8S 0.06 TCGA-AA-3984-01 X 103294957 103294957 G A H2BFM Silent p.T138T 0.44 TCGA-AA-3984-01 X 103359830 103359830 G A ZCCHC18 Missense_Mutation p.R343Q 0.07 tolerated(0.13) possibly_damaging(0.795) TCGA-AA-3984-01 X 103360298 103360298 A C SLC25A53 Intron 0.10 TCGA-AA-3984-01 X 103420429 103420429 C A FAM199X Missense_Mutation p.S108Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-AA-3984-01 X 103420482 103420482 A G FAM199X Missense_Mutation p.S126G 0.19 deleterious_low_confidence(0.01) probably_damaging(0.943) TCGA-AA-3984-01 X 104464182 104464182 C T TEX13A Missense_Mutation p.A232T 0.27 tolerated(0.22) benign(0.014) TCGA-AA-3984-01 X 104999307 104999307 C A IL1RAPL2 Silent p.L443L 0.19 TCGA-AA-3984-01 X 105139512 105139512 A C NRK Missense_Mutation p.K192N 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 X 105153203 105153203 G T NRK Missense_Mutation p.D525Y 0.19 deleterious(0) possibly_damaging(0.643) TCGA-AA-3984-01 X 105168878 105168878 G A NRK Missense_Mutation p.G1057D 0.06 tolerated(0.11) benign(0.002) TCGA-AA-3984-01 X 105199733 105199733 A C NRK 3'UTR 0.29 TCGA-AA-3984-01 X 105278281 105278281 G T SERPINA7 Missense_Mutation p.S330Y 0.07 deleterious(0.03) possibly_damaging(0.776) TCGA-AA-3984-01 X 105450024 105450024 C T MUM1L1 Missense_Mutation p.S200L 0.21 tolerated(0.06) benign(0.014) TCGA-AA-3984-01 X 105452935 105452935 C T MUM1L1 3'UTR 0.41 TCGA-AA-3984-01 X 105855704 105855704 T C CXorf57 Missense_Mutation p.S132P 0.37 deleterious(0.02) possibly_damaging(0.862) TCGA-AA-3984-01 X 105855826 105855826 G A CXorf57 Silent p.A172A 0.29 TCGA-AA-3984-01 X 105882829 105882829 G A CXorf57 Missense_Mutation p.R549H 0.16 deleterious(0) probably_damaging(0.963) TCGA-AA-3984-01 X 105921619 105921619 T G CXorf57 3'UTR 0.56 TCGA-AA-3984-01 X 106109245 106109245 G T TBC1D8B Nonsense_Mutation p.E882* 0.08 TCGA-AA-3984-01 X 106109250 106109250 C A TBC1D8B Missense_Mutation p.F883L 0.16 tolerated(0.06) possibly_damaging(0.485) TCGA-AA-3984-01 X 106776767 106776767 T G FRMPD3 Missense_Mutation p.L128R 0.18 deleterious(0) possibly_damaging(0.71) TCGA-AA-3984-01 X 106788999 106788999 G T FRMPD3 Missense_Mutation p.K143N 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 X 106843629 106843629 C T FRMPD3 Missense_Mutation p.S820L 0.16 deleterious(0) probably_damaging(0.981) TCGA-AA-3984-01 X 106959140 106959140 C T TSC22D3 Missense_Mutation p.E121K 0.27 deleterious(0.01) possibly_damaging(0.767) TCGA-AA-3984-01 X 107334935 107334935 G A ATG4A 5'UTR 0.29 TCGA-AA-3984-01 X 107402894 107402894 C T COL4A6 Missense_Mutation p.R1538H 0.22 possibly_damaging(0.851) TCGA-AA-3984-01 X 107419005 107419005 G A COL4A6 Silent p.F904F 0.43 TCGA-AA-3984-01 X 107422582 107422582 G A COL4A6 Missense_Mutation p.P741S 0.41 possibly_damaging(0.888) TCGA-AA-3984-01 X 107431200 107431200 G T COL4A6 Missense_Mutation p.L550I 0.18 possibly_damaging(0.7) TCGA-AA-3984-01 X 107869542 107869542 T G COL4A5 Missense_Mutation p.I1070S 0.45 unknown(0) TCGA-AA-3984-01 X 107911689 107911689 G T COL4A5 Nonsense_Mutation p.G1249* 0.17 TCGA-AA-3984-01 X 107976835 107976835 C A IRS4 Nonsense_Mutation p.E914* 0.06 TCGA-AA-3984-01 X 107979047 107979047 G T IRS4 Nonsense_Mutation p.Y176* 0.07 TCGA-AA-3984-01 X 108641860 108641860 T A GUCY2F Silent p.G731G 0.43 TCGA-AA-3984-01 X 108697038 108697038 T G GUCY2F Missense_Mutation p.Q361H 0.15 tolerated(1) possibly_damaging(0.452) TCGA-AA-3984-01 X 108926626 108926626 C T ACSL4 Nonsense_Mutation p.W30* 0.20 TCGA-AA-3984-01 X 109416479 109416479 G A TMEM164 Missense_Mutation p.E232K 0.18 tolerated(0.17) benign(0.362) TCGA-AA-3984-01 X 109507753 109507753 T G AMMECR1 Missense_Mutation p.N183T 0.06 tolerated(0.08) benign(0.115) TCGA-AA-3984-01 X 109924873 109924873 T C CHRDL1 Silent p.E331E 0.09 TCGA-AA-3984-01 X 110035398 110035399 - T CHRDL1 Frame_Shift_Ins p.W5Vfs*44 0.32 TCGA-AA-3984-01 X 110463782 110463782 T C PAK3 3'UTR 0.26 TCGA-AA-3984-01 X 110491140 110491140 A G CAPN6 Missense_Mutation p.V522A 0.13 deleterious(0) benign(0.036) TCGA-AA-3984-01 X 110494970 110494970 A G CAPN6 Missense_Mutation p.S234P 0.23 tolerated(0.52) benign(0) TCGA-AA-3984-01 X 110555939 110555939 G A DCX Silent p.L400L 0.06 TCGA-AA-3984-01 X 110644303 110644303 A C DCX Missense_Mutation p.F288C 0.38 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 110931302 110931302 A G ALG13 Intron 0.71 TCGA-AA-3984-01 X 110970087 110970087 C T ALG13 Nonsense_Mutation p.R594* 0.21 TCGA-AA-3984-01 X 111090507 111090507 C T TRPC5 Missense_Mutation p.R512H 0.07 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 X 111698683 111698683 G T ZCCHC16 Missense_Mutation p.A243S 0.24 tolerated(0.64) benign(0.016) TCGA-AA-3984-01 X 111699988 111699988 G T ZCCHC16 3'UTR 0.21 TCGA-AA-3984-01 X 114239798 114239798 C A IL13RA2 Missense_Mutation p.G360C 0.18 tolerated(0.91) benign(0) TCGA-AA-3984-01 X 114347772 114347772 T C LRCH2 3'UTR 0.26 TCGA-AA-3984-01 X 114400448 114400448 C A LRCH2 Missense_Mutation p.R385I 0.39 deleterious(0.01) possibly_damaging(0.812) TCGA-AA-3984-01 X 114414219 114414219 A C LRCH2 Silent p.V239V 0.43 TCGA-AA-3984-01 X 114424905 114424905 C T RBMXL3 Nonsense_Mutation p.R301* 0.06 TCGA-AA-3984-01 X 114427268 114427268 C A RBMXL3 3'UTR 0.13 TCGA-AA-3984-01 X 114879419 114879419 C T PLS3 Missense_Mutation p.A421V 0.27 tolerated(0.1) benign(0.005) TCGA-AA-3984-01 X 115304522 115304522 G A AGTR2 Missense_Mutation p.R330H 0.08 tolerated(0.67) benign(0.004) TCGA-AA-3984-01 X 115304852 115304852 G A AGTR2 3'UTR 0.23 TCGA-AA-3984-01 X 115572172 115572172 G A SLC6A14 Missense_Mutation p.A85T 0.23 tolerated(0.09) possibly_damaging(0.629) TCGA-AA-3984-01 X 115584303 115584303 G A SLC6A14 Silent p.S427S 0.41 TCGA-AA-3984-01 X 115590085 115590085 A C SLC6A14 Missense_Mutation p.E631D 0.20 tolerated(0.11) benign(0.344) TCGA-AA-3984-01 X 117033061 117033061 C A KLHL13 Missense_Mutation p.G596V 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 117079437 117079437 C T KLHL13 Missense_Mutation p.R70H 0.41 deleterious(0.01) probably_damaging(0.933) TCGA-AA-3984-01 X 117106818 117106818 G T KLHL13 Intron 0.14 TCGA-AA-3984-01 X 117796653 117796653 A G DOCK11 Silent p.L1658L 0.08 TCGA-AA-3984-01 X 117814520 117814520 G T DOCK11 Nonsense_Mutation p.E1846* 0.07 TCGA-AA-3984-01 X 11790797 11790797 T C MSL3 Missense_Mutation p.L480S 0.05 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 117960250 117960250 C T ZCCHC12 Missense_Mutation p.S348L 0.18 deleterious(0.05) benign(0.048) TCGA-AA-3984-01 X 117960928 117960928 A C ZCCHC12 3'UTR 0.32 TCGA-AA-3984-01 X 118219496 118219496 A G KIAA1210 Silent p.G1566G 0.10 TCGA-AA-3984-01 X 118221269 118221269 T G KIAA1210 Missense_Mutation p.Q1308H 0.45 deleterious(0.03) probably_damaging(0.995) TCGA-AA-3984-01 X 118586877 118586877 G T SLC25A43 Missense_Mutation p.R292I 0.20 deleterious(0.01) probably_damaging(0.985) TCGA-AA-3984-01 X 118604885 118604885 C T SLC25A5 Missense_Mutation p.T254M 0.48 tolerated(0.05) benign(0.282) TCGA-AA-3984-01 X 118715495 118715495 C A UBE2A Missense_Mutation p.F59L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-AA-3984-01 X 118723245 118723245 G A NKRF 3'UTR 0.10 TCGA-AA-3984-01 X 118797585 118797585 G A SEPT6 Silent p.F67F 0.21 TCGA-AA-3984-01 X 118894126 118894126 T G SOWAHD 3'UTR 0.22 TCGA-AA-3984-01 X 118923917 118923917 G A RPL39 Missense_Mutation p.R21C 0.26 tolerated(0.24) benign(0.036) TCGA-AA-3984-01 X 119037261 119037261 G A AKAP14 Silent p.P25P 0.11 TCGA-AA-3984-01 X 119374166 119374166 C A NKAPP1 RNA 0.38 TCGA-AA-3984-01 X 119387816 119387816 G T ZBTB33 Missense_Mutation p.K182N 0.14 tolerated(0.1) probably_damaging(0.997) TCGA-AA-3984-01 X 119390941 119390941 A C ZBTB33 3'UTR 0.48 TCGA-AA-3984-01 X 119394690 119394690 C T TMEM255A 3'UTR 0.25 TCGA-AA-3984-01 X 119666282 119666282 C A CUL4B Nonsense_Mutation p.E830* 0.09 TCGA-AA-3984-01 X 119678367 119678367 C T CUL4B Missense_Mutation p.R369Q 0.17 tolerated(0.15) benign(0.092) TCGA-AA-3984-01 X 120008929 120008929 G A CT47B1 Missense_Mutation p.A199V 0.29 deleterious(0.05) unknown(0) TCGA-AA-3984-01 X 120181764 120181764 C T GLUD2 Missense_Mutation p.R76C 0.23 deleterious(0) possibly_damaging(0.664) TCGA-AA-3984-01 X 120183050 120183050 C T GLUD2 Silent p.D504D 0.10 TCGA-AA-3984-01 X 122772821 122772821 T G THOC2 Missense_Mutation p.K602Q 0.50 deleterious(0) probably_damaging(0.962) TCGA-AA-3984-01 X 122778658 122778658 T G THOC2 Missense_Mutation p.M511L 0.50 tolerated(1) benign(0.001) TCGA-AA-3984-01 X 122779202 122779202 C A THOC2 Nonsense_Mutation p.E471* 0.16 TCGA-AA-3984-01 X 122799603 122799603 C A THOC2 Missense_Mutation p.D426Y 0.18 deleterious(0) possibly_damaging(0.643) TCGA-AA-3984-01 X 122820447 122820447 T G THOC2 Missense_Mutation p.E240A 0.10 deleterious(0.01) benign(0.082) TCGA-AA-3984-01 X 123191804 123191804 G T STAG2 Missense_Mutation p.V465F 0.11 deleterious(0) probably_damaging(0.983) TCGA-AA-3984-01 X 123234454 123234454 T C STAG2 3'UTR 0.06 TCGA-AA-3984-01 X 123538903 123538903 G A TENM1 Missense_Mutation p.S1790L 0.05 deleterious(0.03) benign(0.008) TCGA-AA-3984-01 X 123587226 123587226 T C TENM1 Silent p.T1355T 0.17 TCGA-AA-3984-01 X 123615732 123615732 C A TENM1 Missense_Mutation p.V1267F 0.20 deleterious(0) benign(0.273) TCGA-AA-3984-01 X 124028186 124028186 G A TENM1 Missense_Mutation p.P165L 0.22 deleterious_low_confidence(0.01) benign(0.011) TCGA-AA-3984-01 X 125298540 125298540 C T DCAF12L2 Silent p.G456G 0.20 TCGA-AA-3984-01 X 125686237 125686237 T C DCAF12L1 Missense_Mutation p.T119A 0.43 deleterious(0.01) possibly_damaging(0.799) TCGA-AA-3984-01 X 125955346 125955346 C T CXorf64 Missense_Mutation p.S242F 0.07 tolerated(0.05) benign(0.066) TCGA-AA-3984-01 X 125955487 125955487 C T CXorf64 Missense_Mutation p.A289V 0.21 tolerated(0.77) benign(0) TCGA-AA-3984-01 X 127186027 127186027 C T ACTRT1 Silent p.Q53Q 0.36 TCGA-AA-3984-01 X 12736418 12736418 C T FRMPD4 Missense_Mutation p.S1158F 0.43 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-AA-3984-01 X 12736467 12736467 C T FRMPD4 Silent p.C1174C 0.12 TCGA-AA-3984-01 X 128631956 128631956 C T SMARCA1 Missense_Mutation p.R457Q 0.09 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 128703273 128703273 G A OCRL Missense_Mutation p.R500Q 0.19 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 128722240 128722240 C T OCRL Missense_Mutation p.P781S 0.21 tolerated(0.34) benign(0.084) TCGA-AA-3984-01 X 128884528 128884528 C T XPNPEP2 Missense_Mutation p.A241V 0.49 deleterious(0.03) benign(0.223) TCGA-AA-3984-01 X 128901641 128901641 C T XPNPEP2 Silent p.I601I 0.19 TCGA-AA-3984-01 X 129045118 129045118 A T UTP14A Missense_Mutation p.I125F 0.21 deleterious(0.03) possibly_damaging(0.653) TCGA-AA-3984-01 X 129059953 129059953 A T UTP14A Missense_Mutation p.D603V 0.47 deleterious(0.01) probably_damaging(0.94) TCGA-AA-3984-01 X 129215241 129215241 C A ELF4 Missense_Mutation p.D22Y 0.08 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AA-3984-01 X 129272596 129272596 G A AIFM1 Silent p.S313S 0.23 TCGA-AA-3984-01 X 129535995 129535995 G A RBMX2 5'UTR 0.19 TCGA-AA-3984-01 X 130217681 130217681 C T ARHGAP36 Intron 0.23 TCGA-AA-3984-01 X 130409700 130409700 G T IGSF1 Missense_Mutation p.S984Y 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-AA-3984-01 X 130417063 130417063 G A IGSF1 Silent p.F281F 0.06 TCGA-AA-3984-01 X 13058908 13058908 T C FAM9C Missense_Mutation p.K100E 0.46 tolerated(1) benign(0.002) TCGA-AA-3984-01 X 131202570 131202570 T C MST4 Silent p.V190V 0.07 TCGA-AA-3984-01 X 131212040 131212040 C A FRMD7 Nonsense_Mutation p.E669* 0.08 TCGA-AA-3984-01 X 131214069 131214069 A G FRMD7 Missense_Mutation p.S339P 0.07 deleterious(0) possibly_damaging(0.634) TCGA-AA-3984-01 X 131842517 131842517 C T HS6ST2 Missense_Mutation p.R318K 0.05 tolerated_low_confidence(0.11) possibly_damaging(0.498) TCGA-AA-3984-01 X 132161522 132161522 C T USP26 Missense_Mutation p.A243T 0.51 tolerated(0.58) benign(0.004) TCGA-AA-3984-01 X 132161863 132161863 T G USP26 Missense_Mutation p.K129T 0.50 deleterious(0.01) probably_damaging(0.913) TCGA-AA-3984-01 X 132438854 132438854 C A GPC4 Missense_Mutation p.K397N 0.17 deleterious(0) benign(0.301) TCGA-AA-3984-01 X 132473363 132473363 T C GPC4 Missense_Mutation p.H56R 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-AA-3984-01 X 132887895 132887895 T C GPC3 Missense_Mutation p.M216V 0.15 tolerated(0.43) benign(0.342) TCGA-AA-3984-01 X 133379296 133379296 G T CCDC160 Nonsense_Mutation p.E156* 0.12 TCGA-AA-3984-01 X 133379359 133379359 C T CCDC160 Missense_Mutation p.H177Y 0.17 tolerated(0.09) benign(0) TCGA-AA-3984-01 X 133379614 133379614 G T CCDC160 Nonsense_Mutation p.E262* 0.43 TCGA-AA-3984-01 X 134031041 134031041 C T MOSPD1 Missense_Mutation p.R85Q 0.63 tolerated(0.5) benign(0.004) TCGA-AA-3984-01 X 134125712 134125712 G A SMIM10 3'UTR 0.14 TCGA-AA-3984-01 X 134421769 134421769 A T ZNF75D Missense_Mutation p.L278Q 0.16 deleterious(0.02) benign(0.102) TCGA-AA-3984-01 X 134556201 134556201 G A LINC00086 RNA 0.25 TCGA-AA-3984-01 X 134711279 134711279 C T DDX26B Silent p.G645G 0.15 TCGA-AA-3984-01 X 135328416 135328416 G A MAP7D3 Missense_Mutation p.S52L 0.39 deleterious(0) probably_damaging(0.963) TCGA-AA-3984-01 X 135429625 135429625 T G GPR112 Missense_Mutation p.L1254V 0.27 tolerated(0.28) benign(0.018) TCGA-AA-3984-01 X 135429634 135429634 G A GPR112 Missense_Mutation p.D1257N 0.43 tolerated(0.17) benign(0.013) TCGA-AA-3984-01 X 135572547 135572547 C T BRS3 Silent p.L230L 0.40 TCGA-AA-3984-01 X 135581783 135581783 T C HTATSF1 Silent p.Y71Y 0.16 TCGA-AA-3984-01 X 135738571 135738571 A G CD40LG Missense_Mutation p.T135A 0.20 tolerated(1) benign(0) TCGA-AA-3984-01 X 135764085 135764085 C A ARHGEF6 Nonsense_Mutation p.E508* 0.15 TCGA-AA-3984-01 X 135814276 135814276 C A ARHGEF6 Missense_Mutation p.K239N 0.44 deleterious(0.03) possibly_damaging(0.58) TCGA-AA-3984-01 X 135825807 135825807 C T ARHGEF6 Missense_Mutation p.G200S 0.46 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 X 136113542 136113542 G A GPR101 Missense_Mutation p.P98S 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-AA-3984-01 X 13681284 13681284 A C TCEANC Missense_Mutation p.K249N 0.47 deleterious(0) probably_damaging(0.998) TCGA-AA-3984-01 X 13771281 13771281 A C OFD1 Intron 0.20 TCGA-AA-3984-01 X 138643706 138643706 G T F9 Nonsense_Mutation p.E288* 0.22 TCGA-AA-3984-01 X 138643813 138643813 A G F9 Silent p.E323E 0.07 TCGA-AA-3984-01 X 138664528 138664528 C A MCF2 3'UTR 0.09 TCGA-AA-3984-01 X 138867415 138867415 G A ATP11C Missense_Mutation p.R549C 0.21 deleterious(0.04) probably_damaging(1) TCGA-AA-3984-01 X 138897044 138897044 T C ATP11C Missense_Mutation p.K143R 0.08 tolerated(0.06) possibly_damaging(0.781) TCGA-AA-3984-01 X 138899074 138899074 A G ATP11C Missense_Mutation p.V92A 0.09 tolerated(0.06) benign(0.201) TCGA-AA-3984-01 X 139038785 139038785 G T CXorf66 Nonsense_Mutation p.S119* 0.17 TCGA-AA-3984-01 X 140953299 140953299 C T MAGEC3 Missense_Mutation p.L56F 0.07 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-AA-3984-01 X 140985469 140985469 A G MAGEC3 Missense_Mutation p.I595V 0.20 deleterious(0.04) benign(0.22) TCGA-AA-3984-01 X 140994778 140994778 C A MAGEC1 Missense_Mutation p.L530I 0.41 deleterious_low_confidence(0) benign(0.364) TCGA-AA-3984-01 X 140995445 140995445 C A MAGEC1 Missense_Mutation p.S752Y 0.15 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-AA-3984-01 X 140995641 140995641 C T MAGEC1 Silent p.F817F 0.09 TCGA-AA-3984-01 X 142113800 142113800 C A SPANXN4 5'UTR 0.18 TCGA-AA-3984-01 X 142803828 142803828 T C SPANXN2 5'UTR 0.16 TCGA-AA-3984-01 X 142967189 142967189 G A UBE2NL 5'UTR 0.11 TCGA-AA-3984-01 X 144337489 144337489 G A SPANXN1 3'UTR 0.25 TCGA-AA-3984-01 X 144905077 144905077 G T SLITRK2 Missense_Mutation p.K378N 0.11 deleterious(0) possibly_damaging(0.883) TCGA-AA-3984-01 X 144905719 144905719 G T SLITRK2 Missense_Mutation p.M592I 0.07 tolerated(0.49) benign(0.017) TCGA-AA-3984-01 X 144906571 144906571 C A SLITRK2 3'UTR 0.13 TCGA-AA-3984-01 X 144906701 144906701 T G SLITRK2 3'UTR 0.35 TCGA-AA-3984-01 X 144909166 144909166 T C TMEM257 5'UTR 0.48 TCGA-AA-3984-01 X 144909956 144909956 A G TMEM257 3'UTR 0.26 TCGA-AA-3984-01 X 144910238 144910238 T C TMEM257 3'UTR 0.21 TCGA-AA-3984-01 X 144910276 144910276 A C TMEM257 3'UTR 0.42 TCGA-AA-3984-01 X 144910782 144910782 C T TMEM257 3'UTR 0.20 TCGA-AA-3984-01 X 148037240 148037240 T G AFF2 Silent p.T555T 0.07 TCGA-AA-3984-01 X 148072809 148072809 C T AFF2 Missense_Mutation p.R1295C 0.21 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 X 148072844 148072844 C T AFF2 Silent p.I1306I 0.21 TCGA-AA-3984-01 X 148797927 148797927 C T MAGEA11 Missense_Mutation p.P261S 0.44 tolerated(0.06) benign(0.3) TCGA-AA-3984-01 X 149613801 149613801 C T MAMLD1 Missense_Mutation p.R7W 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-3984-01 X 149638972 149638972 C T MAMLD1 Missense_Mutation p.S351L 0.47 deleterious(0.01) benign(0.305) TCGA-AA-3984-01 X 150349428 150349428 T C GPR50 Missense_Mutation p.V458A 0.09 deleterious_low_confidence(0.04) benign(0.027) TCGA-AA-3984-01 X 150840105 150840105 C T PASD1 Missense_Mutation p.P431S 0.14 tolerated(0.21) possibly_damaging(0.574) TCGA-AA-3984-01 X 150841078 150841078 C T PASD1 Missense_Mutation p.P621S 0.08 tolerated(0.46) benign(0.021) TCGA-AA-3984-01 X 150889903 150889903 T G FATE1 Missense_Mutation p.S91A 0.45 tolerated(0.7) benign(0.003) TCGA-AA-3984-01 X 150912334 150912334 C T CNGA2 Silent p.R453R 0.09 TCGA-AA-3984-01 X 151818999 151818999 C T GABRQ Missense_Mutation p.S286L 0.47 deleterious(0) probably_damaging(0.967) TCGA-AA-3984-01 X 151870203 151870203 G A MAGEA6 Missense_Mutation p.R298H 0.27 tolerated(0.12) benign(0) TCGA-AA-3984-01 X 151900443 151900443 G T MAGEA12 Missense_Mutation p.L120M 0.38 tolerated(0.1) probably_damaging(0.96) TCGA-AA-3984-01 X 151935039 151935039 G T MAGEA3 3'UTR 0.22 TCGA-AA-3984-01 X 152089273 152089273 G A ZNF185 Missense_Mutation p.A212T 0.12 deleterious(0.03) probably_damaging(0.986) TCGA-AA-3984-01 X 152225402 152225402 G T PNMA3 5'UTR 0.09 TCGA-AA-3984-01 X 152226174 152226174 T G PNMA3 Missense_Mutation p.C254W 0.24 tolerated(0.05) possibly_damaging(0.525) TCGA-AA-3984-01 X 152613787 152613787 G A ZNF275 3'UTR 0.19 TCGA-AA-3984-01 X 152614374 152614374 C A ZNF275 3'UTR 0.12 TCGA-AA-3984-01 X 152614405 152614405 C T ZNF275 3'UTR 0.19 TCGA-AA-3984-01 X 152616267 152616267 C T ZNF275 3'UTR 0.42 TCGA-AA-3984-01 X 152616922 152616922 C A ZNF275 3'UTR 0.13 TCGA-AA-3984-01 X 15268633 15268633 T C ASB9 Missense_Mutation p.K163E 0.49 tolerated(0.96) benign(0.071) TCGA-AA-3984-01 X 152813344 152813344 C T ATP2B3 Missense_Mutation p.A337V 0.09 tolerated(0.09) possibly_damaging(0.85) TCGA-AA-3984-01 X 152815521 152815521 G A ATP2B3 Missense_Mutation p.A534T 0.13 deleterious(0.03) possibly_damaging(0.466) TCGA-AA-3984-01 X 152823606 152823606 G A ATP2B3 Missense_Mutation p.D824N 0.09 deleterious(0.03) probably_damaging(0.931) TCGA-AA-3984-01 X 152853752 152853752 C T FAM58A 3'UTR 0.10 TCGA-AA-3984-01 X 152858148 152858148 C T FAM58A Missense_Mutation p.R156H 0.07 tolerated(0.18) benign(0.049) TCGA-AA-3984-01 X 152861535 152861535 A G FAM58A Missense_Mutation p.S73P 0.20 deleterious(0.03) probably_damaging(0.937) TCGA-AA-3984-01 X 152937072 152937072 T G PNCK Missense_Mutation p.D240A 0.40 deleterious(0) possibly_damaging(0.701) TCGA-AA-3984-01 X 152981107 152981107 C T BCAP31 Silent p.T144T 0.20 TCGA-AA-3984-01 X 153050449 153050449 C T SRPK3 Missense_Mutation p.R473C 0.06 deleterious(0) probably_damaging(0.911) TCGA-AA-3984-01 X 153053531 153053531 G A IDH3G Missense_Mutation p.R136C 0.23 deleterious(0.01) probably_damaging(0.91) TCGA-AA-3984-01 X 153069148 153069148 C T PDZD4 Missense_Mutation p.R657H 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 X 153070250 153070250 C T PDZD4 Missense_Mutation p.E290K 0.24 tolerated(0.11) probably_damaging(0.931) TCGA-AA-3984-01 X 153073877 153073877 G A PDZD4 Silent p.F78F 0.21 TCGA-AA-3984-01 X 153171657 153171657 C A AVPR2 Missense_Mutation p.H233N 0.26 tolerated(0.06) probably_damaging(0.98) TCGA-AA-3984-01 X 153178162 153178162 A C ARHGAP4 Missense_Mutation p.F552V 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-AA-3984-01 X 153201026 153201026 G A RENBP Missense_Mutation p.R361C 0.18 tolerated(0.05) probably_damaging(0.919) TCGA-AA-3984-01 X 153208502 153208502 G A RENBP Silent p.I164I 0.20 TCGA-AA-3984-01 X 153418414 153418414 G A OPN1LW Silent p.G137G 0.24 TCGA-AA-3984-01 X 15342936 15342936 A C PIGA Missense_Mutation p.L347V 0.07 deleterious(0.01) probably_damaging(0.954) TCGA-AA-3984-01 X 153539197 153539197 T G TKTL1 Missense_Mutation p.F121V 0.15 deleterious(0) probably_damaging(0.93) TCGA-AA-3984-01 X 153579391 153579391 T C FLNA Missense_Mutation p.N2348D 0.18 tolerated(0.33) benign(0.377) TCGA-AA-3984-01 X 153587934 153587934 C T FLNA Missense_Mutation p.D1354N 0.19 tolerated(0.06) benign(0.071) TCGA-AA-3984-01 X 153588948 153588948 G A FLNA Missense_Mutation p.A1072V 0.40 tolerated(0.22) possibly_damaging(0.844) TCGA-AA-3984-01 X 153593034 153593034 C T FLNA Missense_Mutation p.D628N 0.11 deleterious(0.02) possibly_damaging(0.857) TCGA-AA-3984-01 X 153642455 153642455 G A TAZ Missense_Mutation p.A130T 0.22 tolerated_low_confidence(0.49) benign(0.001) TCGA-AA-3984-01 X 153697062 153697062 A C PLXNA3 Missense_Mutation p.K1426T 0.19 deleterious(0) benign(0.397) TCGA-AA-3984-01 X 153924241 153924241 A C GAB3 Missense_Mutation p.F494C 0.19 tolerated(0.08) possibly_damaging(0.664) TCGA-AA-3984-01 X 153944592 153944592 G A GAB3 Missense_Mutation p.R29C 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 X 154009556 154009556 C T MPP1 Silent p.S394S 0.21 TCGA-AA-3984-01 X 154132582 154132582 T C F8 Missense_Mutation p.Y1935C 0.51 tolerated(0.06) probably_damaging(0.977) TCGA-AA-3984-01 X 154213006 154213006 G T F8 Missense_Mutation p.P248H 0.07 tolerated(0.12) benign(0.053) TCGA-AA-3984-01 X 154225369 154225369 A G F8 Silent p.G89G 0.48 TCGA-AA-3984-01 X 154261691 154261691 A C FUNDC2 Silent p.G49G 0.18 TCGA-AA-3984-01 X 154292420 154292420 A C MTCP1 3'UTR 0.19 TCGA-AA-3984-01 X 154319059 154319059 A G BRCC3 Missense_Mutation p.T165A 0.21 tolerated(0.38) benign(0.189) TCGA-AA-3984-01 X 154507079 154507079 G T CLIC2 3'UTR 0.38 TCGA-AA-3984-01 X 1546818 1546818 C T ASMTL Missense_Mutation p.E236K 0.15 tolerated(0.07) benign(0.086) TCGA-AA-3984-01 X 155003499 155003499 C T SPRY3 5'UTR 0.14 TCGA-AA-3984-01 X 155006626 155006626 T C SPRY3 3'UTR 0.27 TCGA-AA-3984-01 X 155007325 155007325 T G SPRY3 3'UTR 0.15 TCGA-AA-3984-01 X 155007361 155007361 G A SPRY3 3'UTR 0.09 TCGA-AA-3984-01 X 155007914 155007914 C A SPRY3 3'UTR 0.07 TCGA-AA-3984-01 X 155010079 155010079 G T SPRY3 3'UTR 0.24 TCGA-AA-3984-01 X 155010246 155010246 A C SPRY3 3'UTR 0.22 TCGA-AA-3984-01 X 15579984 15579984 T G ACE2 3'UTR 0.44 TCGA-AA-3984-01 X 15589759 15589759 C T ACE2 Missense_Mutation p.D609N 0.18 tolerated(0.46) benign(0.005) TCGA-AA-3984-01 X 15721157 15721157 G A CA5BP1 RNA 0.07 TCGA-AA-3984-01 X 16672728 16672728 C A S100G 3'UTR 0.33 TCGA-AA-3984-01 X 16717046 16717046 C A CTPS2 Missense_Mutation p.V113F 0.22 deleterious(0.03) possibly_damaging(0.582) TCGA-AA-3984-01 X 16721006 16721006 G A CTPS2 Missense_Mutation p.T7M 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-AA-3984-01 X 16859973 16859973 A C TXLNG 3'UTR 0.18 TCGA-AA-3984-01 X 17165584 17165584 C T REPS2 Missense_Mutation p.R655C 0.17 deleterious(0) probably_damaging(0.995) TCGA-AA-3984-01 X 1761800 1761800 G T ASMT Nonsense_Mutation p.E339* 0.09 TCGA-AA-3984-01 X 17705889 17705889 A C NHS Missense_Mutation p.K198T 0.14 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 X 17746341 17746341 A T NHS Missense_Mutation p.K1351I 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.888) TCGA-AA-3984-01 X 17750037 17750037 C T NHS Missense_Mutation p.S1449L 0.42 tolerated(0.29) benign(0.009) TCGA-AA-3984-01 X 18189138 18189138 T G BEND2 Missense_Mutation p.K723T 0.12 deleterious(0.03) probably_damaging(0.98) TCGA-AA-3984-01 X 18198701 18198701 C T BEND2 Missense_Mutation p.R453H 0.42 tolerated(0.55) benign(0) TCGA-AA-3984-01 X 18213460 18213460 G A BEND2 Missense_Mutation p.A379V 0.24 tolerated(0.19) benign(0.001) TCGA-AA-3984-01 X 18230697 18230697 G A BEND2 Silent p.F160F 0.23 TCGA-AA-3984-01 X 18276313 18276313 C T SCML2 Missense_Mutation p.R375K 0.19 tolerated(1) benign(0.002) TCGA-AA-3984-01 X 18622879 18622879 C A CDKL5 Missense_Mutation p.S612Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-AA-3984-01 X 18662735 18662735 G A RS1 Missense_Mutation p.L113F 0.09 deleterious(0.05) possibly_damaging(0.83) TCGA-AA-3984-01 X 18961840 18961840 G A PHKA2 Silent p.V235V 0.44 TCGA-AA-3984-01 X 19017287 19017287 C T GPR64 Missense_Mutation p.R814Q 0.07 deleterious(0.04) probably_damaging(0.934) TCGA-AA-3984-01 X 19379675 19379675 C T MAP3K15 Missense_Mutation p.R1239K 0.45 tolerated(0.77) benign(0.001) TCGA-AA-3984-01 X 19410479 19410479 G A MAP3K15 Silent p.I769I 0.41 TCGA-AA-3984-01 X 19410574 19410574 G T MAP3K15 Missense_Mutation p.L738M 0.07 deleterious(0) probably_damaging(0.996) TCGA-AA-3984-01 X 19431491 19431491 A G MAP3K15 Missense_Mutation p.V561A 0.20 deleterious(0.04) benign(0.051) TCGA-AA-3984-01 X 19764487 19764487 T G SH3KBP1 Missense_Mutation p.S79R 0.15 deleterious(0.02) benign(0.04) TCGA-AA-3984-01 X 20060691 20060691 G A MAP7D2 Silent p.F312F 0.06 TCGA-AA-3984-01 X 21627250 21627250 C T CNKSR2 Missense_Mutation p.S736F 0.08 tolerated(0.19) benign(0.013) TCGA-AA-3984-01 X 21676227 21676227 C T KLHL34 5'UTR 0.16 TCGA-AA-3984-01 X 22003279 22003279 C A SMS Missense_Mutation p.L295I 0.48 tolerated(0.45) possibly_damaging(0.801) TCGA-AA-3984-01 X 22291207 22291207 T C ZNF645 Silent p.I33I 0.23 TCGA-AA-3984-01 X 22291533 22291533 G A ZNF645 Missense_Mutation p.R142Q 0.15 tolerated(0.36) benign(0.014) TCGA-AA-3984-01 X 23019629 23019629 C T DDX53 Silent p.S485S 0.18 TCGA-AA-3984-01 X 23725992 23725992 A G ACOT9 Splice_Site p.X244_splice 0.08 TCGA-AA-3984-01 X 23801802 23801802 G T SAT1 Nonsense_Mutation p.E32* 0.12 TCGA-AA-3984-01 X 24006166 24006166 A C KLHL15 Missense_Mutation p.F563V 0.07 deleterious(0) probably_damaging(0.916) TCGA-AA-3984-01 X 24608208 24608208 G A PCYT1B Missense_Mutation p.R140C 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-AA-3984-01 X 24665288 24665288 C T PCYT1B 5'UTR 0.48 TCGA-AA-3984-01 X 24744172 24744172 G A POLA1 Silent p.S458S 0.15 TCGA-AA-3984-01 X 24767006 24767006 C T POLA1 Missense_Mutation p.A948V 0.20 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 X 26157474 26157474 G A MAGEB18 Silent p.T124T 0.40 TCGA-AA-3984-01 X 2688599 2688599 G T XG Missense_Mutation p.D24Y 0.05 deleterious(0) probably_damaging(0.979) TCGA-AA-3984-01 X 27997802 27997802 G T DCAF8L1 Missense_Mutation p.F550L 0.16 tolerated(0.11) benign(0.013) TCGA-AA-3984-01 X 27998054 27998054 C T DCAF8L1 Silent p.E466E 0.40 TCGA-AA-3984-01 X 2933164 2933164 T C ARSH Missense_Mutation p.I165T 0.07 tolerated(0.44) benign(0.009) TCGA-AA-3984-01 X 2936695 2936695 A C ARSH Missense_Mutation p.E295D 0.17 deleterious(0.01) benign(0.381) TCGA-AA-3984-01 X 29417351 29417351 A G IL1RAPL1 Missense_Mutation p.D210G 0.13 tolerated(0.13) probably_damaging(0.997) TCGA-AA-3984-01 X 29959812 29959812 C A IL1RAPL1 Missense_Mutation p.L368I 0.22 tolerated(0.56) benign(0.257) TCGA-AA-3984-01 X 29973940 29973940 G T IL1RAPL1 3'UTR 0.20 TCGA-AA-3984-01 X 30237448 30237448 G A MAGEB2 Missense_Mutation p.D251N 0.20 deleterious(0.01) possibly_damaging(0.85) TCGA-AA-3984-01 X 30671719 30671719 C T GK Missense_Mutation p.S22L 0.17 deleterious(0) possibly_damaging(0.873) TCGA-AA-3984-01 X 31676113 31676113 T G DMD Missense_Mutation p.H2674P 0.14 benign(0.402) TCGA-AA-3984-01 X 31893320 31893320 T C DMD Silent p.G2361G 0.05 TCGA-AA-3984-01 X 3228317 3228317 A G MXRA5 Missense_Mutation p.Y2643H 0.17 tolerated(0.21) benign(0.139) TCGA-AA-3984-01 X 3235845 3235845 G A MXRA5 Silent p.D1959D 0.47 TCGA-AA-3984-01 X 32383211 32383211 C A DMD Missense_Mutation p.D1651Y 0.08 probably_damaging(0.934) TCGA-AA-3984-01 X 32407652 32407652 T G DMD Missense_Mutation p.Q1495P 0.42 possibly_damaging(0.679) TCGA-AA-3984-01 X 32591888 32591888 T G DMD Missense_Mutation p.K560Q 0.09 possibly_damaging(0.888) TCGA-AA-3984-01 X 33229580 33229580 C T DMD 5'UTR 0.13 TCGA-AA-3984-01 X 34148155 34148155 G A FAM47A Silent p.G747G 0.38 TCGA-AA-3984-01 X 34148326 34148326 A G FAM47A Silent p.R690R 0.43 TCGA-AA-3984-01 X 34148334 34148334 C T FAM47A Missense_Mutation p.A688T 0.07 tolerated(0.17) probably_damaging(0.982) TCGA-AA-3984-01 X 34150306 34150306 G A FAM47A Silent p.F30F 0.40 TCGA-AA-3984-01 X 34961038 34961038 C T FAM47B Silent p.F30F 0.44 TCGA-AA-3984-01 X 3533927 3533927 C T PRKX Missense_Mutation p.A294T 0.20 tolerated(0.06) possibly_damaging(0.718) TCGA-AA-3984-01 X 3533934 3533934 C A PRKX Splice_Site p.X292_splice 0.08 TCGA-AA-3984-01 X 35937931 35937931 G T CXorf22 Missense_Mutation p.K5N 0.10 tolerated_low_confidence(0.12) benign(0) TCGA-AA-3984-01 X 35938017 35938017 C T CXorf22 Missense_Mutation p.S34L 0.07 tolerated(0.47) benign(0.001) TCGA-AA-3984-01 X 35944213 35944213 A G CXorf22 Missense_Mutation p.D110G 0.41 deleterious(0.01) possibly_damaging(0.745) TCGA-AA-3984-01 X 35969991 35969991 A C CXorf22 Silent p.I319I 0.48 TCGA-AA-3984-01 X 35984794 35984794 C A CXorf22 Missense_Mutation p.S508Y 0.09 deleterious(0) benign(0.296) TCGA-AA-3984-01 X 35993924 35993924 T C CXorf22 Silent p.F869F 0.23 TCGA-AA-3984-01 X 36007494 36007494 T C CXorf22 Silent p.S924S 0.24 TCGA-AA-3984-01 X 36007610 36007610 A C CXorf22 Missense_Mutation p.E963A 0.16 deleterious_low_confidence(0.02) benign(0.023) TCGA-AA-3984-01 X 37026652 37026652 G A FAM47C Missense_Mutation p.D57N 0.08 tolerated(0.13) benign(0.029) TCGA-AA-3984-01 X 37553691 37553691 G A XK Missense_Mutation p.R133Q 0.18 tolerated(0.09) probably_damaging(1) TCGA-AA-3984-01 X 37850383 37850383 C T CXorf27 Silent p.S97S 0.07 TCGA-AA-3984-01 X 37969600 37969600 A C SYTL5 Missense_Mutation p.E509D 0.24 tolerated(0.06) probably_damaging(0.923) TCGA-AA-3984-01 X 37981403 37981403 C A SYTL5 Missense_Mutation p.F614L 0.19 tolerated(1) benign(0.001) TCGA-AA-3984-01 X 38240672 38240672 G A OTC Missense_Mutation p.D126N 0.15 deleterious(0) probably_damaging(0.989) TCGA-AA-3984-01 X 38665723 38665723 T C MID1IP1 3'UTR 0.18 TCGA-AA-3984-01 X 39911589 39911589 G A BCOR Missense_Mutation p.R1681C 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-AA-3984-01 X 39922974 39922974 G A BCOR Missense_Mutation p.A1245V 0.10 tolerated(1) benign(0.001) TCGA-AA-3984-01 X 40510926 40510926 T G MED14 3'UTR 0.48 TCGA-AA-3984-01 X 41027380 41027380 C T USP9X Nonsense_Mutation p.R849* 0.22 TCGA-AA-3984-01 X 41073882 41073882 C A USP9X Missense_Mutation p.L1751I 0.20 tolerated(0.19) possibly_damaging(0.74) TCGA-AA-3984-01 X 41204756 41204756 G T DDX3X Nonsense_Mutation p.E424* 0.21 TCGA-AA-3984-01 X 41333789 41333789 G A NYX Silent p.P361P 0.26 TCGA-AA-3984-01 X 41495905 41495905 G A CASK Missense_Mutation p.R281C 0.06 deleterious(0) possibly_damaging(0.733) TCGA-AA-3984-01 X 41556076 41556076 C A GPR34 3'UTR 0.06 TCGA-AA-3984-01 X 41556490 41556490 G T GPR34 3'UTR 0.15 TCGA-AA-3984-01 X 44120429 44120429 C A EFHC2 Missense_Mutation p.K166N 0.05 deleterious(0.01) probably_damaging(0.947) TCGA-AA-3984-01 X 45011148 45011148 T G CXorf36 Missense_Mutation p.S351R 0.14 tolerated(0.27) benign(0.334) TCGA-AA-3984-01 X 46332957 46332957 A C KRBOX4 3'UTR 0.44 TCGA-AA-3984-01 X 46434072 46434072 G A CHST7 Missense_Mutation p.A236T 0.47 tolerated(0.43) benign(0.427) TCGA-AA-3984-01 X 46712984 46712984 G A RP2 Missense_Mutation p.G59E 0.43 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 X 46917586 46917586 G A JADE3 Missense_Mutation p.A527T 0.08 tolerated(0.28) benign(0.003) TCGA-AA-3984-01 X 47098812 47098812 G A USP11 Missense_Mutation p.A160T 0.12 tolerated(0.98) benign(0.159) TCGA-AA-3984-01 X 47107238 47107238 G A USP11 Missense_Mutation p.R934Q 0.09 tolerated(0.1) benign(0.137) TCGA-AA-3984-01 X 47271890 47271891 - G ZNF157 Frame_Shift_Ins p.K141Efs*5 0.17 TCGA-AA-3984-01 X 47306889 47306889 C T ZNF41 Silent p.S760S 0.07 TCGA-AA-3984-01 X 47464419 47464419 G T SYN1 Missense_Mutation p.F244L 0.21 deleterious(0) probably_damaging(0.958) TCGA-AA-3984-01 X 47775430 47775430 G T ZNF81 Missense_Mutation p.R462I 0.26 tolerated(0.07) probably_damaging(0.993) TCGA-AA-3984-01 X 47836221 47836221 C A ZNF182 Missense_Mutation p.R422I 0.20 tolerated(0.06) probably_damaging(0.994) TCGA-AA-3984-01 X 47918547 47918547 C T ZNF630 Silent p.E428E 0.13 TCGA-AA-3984-01 X 47918983 47918983 C T ZNF630 Missense_Mutation p.R283K 0.20 tolerated(0.18) benign(0.008) TCGA-AA-3984-01 X 47926286 47926286 C A ZNF630 5'UTR 0.15 TCGA-AA-3984-01 X 48047120 48047120 T G SSX5 Missense_Mutation p.K213Q 0.23 deleterious(0.02) possibly_damaging(0.792) TCGA-AA-3984-01 X 48051694 48051694 C T SSX5 Missense_Mutation p.G143S 0.07 tolerated(0.64) benign(0.042) TCGA-AA-3984-01 X 48652311 48652311 G A GATA1 Missense_Mutation p.E328K 0.21 tolerated_low_confidence(0.47) possibly_damaging(0.905) TCGA-AA-3984-01 X 48673184 48673184 G A HDAC6 Intron 0.23 TCGA-AA-3984-01 X 48763524 48763524 G T SLC35A2 Intron 0.22 TCGA-AA-3984-01 X 48825777 48825777 C T KCND1 Missense_Mutation p.R301H 0.20 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 X 48834514 48834514 G T GRIPAP1 Intron 0.23 TCGA-AA-3984-01 X 48932852 48932852 A G WDR45 Missense_Mutation p.S307P 0.46 tolerated(0.38) benign(0.003) TCGA-AA-3984-01 X 49028407 49028407 G A PLP2 Silent p.S20S 0.24 TCGA-AA-3984-01 X 49036124 49036124 T C PRICKLE3 Missense_Mutation p.D115G 0.09 tolerated(0.07) benign(0.309) TCGA-AA-3984-01 X 49054284 49054284 G A SYP Silent p.F39F 0.09 TCGA-AA-3984-01 X 49065000 49065000 G A CACNA1F Missense_Mutation p.P1711S 0.39 tolerated(0.42) benign(0.002) TCGA-AA-3984-01 X 49071906 49071906 T G CACNA1F Missense_Mutation p.I1123L 0.20 tolerated(0.29) benign(0.141) TCGA-AA-3984-01 X 49079525 49079525 G T CACNA1F Missense_Mutation p.L661I 0.48 deleterious(0) probably_damaging(0.994) TCGA-AA-3984-01 X 49107902 49107902 G A FOXP3 Missense_Mutation p.R397W 0.21 deleterious(0) probably_damaging(0.992) TCGA-AA-3984-01 X 49138517 49138517 G A PPP1R3F Missense_Mutation p.M378I 0.24 tolerated_low_confidence(0.09) possibly_damaging(0.795) TCGA-AA-3984-01 X 49142863 49142863 G A PPP1R3F Missense_Mutation p.E571K 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.87) TCGA-AA-3984-01 X 49645045 49645045 G T USP27X Missense_Mutation p.E45D 0.23 tolerated(0.18) benign(0.001) TCGA-AA-3984-01 X 50052174 50052174 G T CCNB3 Missense_Mutation p.E335D 0.18 tolerated(0.09) possibly_damaging(0.836) TCGA-AA-3984-01 X 50052333 50052333 G A CCNB3 Silent p.Q388Q 0.08 TCGA-AA-3984-01 X 50123029 50123029 C A DGKK RNA 0.18 TCGA-AA-3984-01 X 50146548 50146548 C T DGKK RNA 0.22 TCGA-AA-3984-01 X 50350668 50350668 C T SHROOM4 Silent p.E1158E 0.08 TCGA-AA-3984-01 X 50376647 50376647 T C SHROOM4 Missense_Mutation p.Q809R 0.20 tolerated(0.1) benign(0.002) TCGA-AA-3984-01 X 50658862 50658862 G A BMP15 Missense_Mutation p.R145H 0.09 tolerated(1) benign(0) TCGA-AA-3984-01 X 51150637 51150637 C T CXorf67 Missense_Mutation p.R257C 0.14 tolerated(0.13) probably_damaging(0.93) TCGA-AA-3984-01 X 52825525 52825525 C A SPANXN5 3'UTR 0.41 TCGA-AA-3984-01 X 52825633 52825633 C T SPANXN5 Silent p.P38P 0.07 TCGA-AA-3984-01 X 52891644 52891644 C T XAGE3 3'UTR 0.09 TCGA-AA-3984-01 X 52896285 52896285 G A XAGE3 Intron 0.15 TCGA-AA-3984-01 X 53565326 53565326 G A HUWE1 Missense_Mutation p.R3990C 0.07 unknown(0) TCGA-AA-3984-01 X 53585708 53585708 G A HUWE1 Nonsense_Mutation p.R2690* 0.05 TCGA-AA-3984-01 X 54099659 54099659 A G FAM120C Missense_Mutation p.V1033A 0.25 tolerated_low_confidence(0.25) benign(0.343) TCGA-AA-3984-01 X 54259369 54259369 A G WNK3 Silent p.D1571D 0.08 TCGA-AA-3984-01 X 54259383 54259383 G A WNK3 Missense_Mutation p.R1567W 0.47 deleterious(0.05) benign(0.022) TCGA-AA-3984-01 X 54275714 54275714 C T WNK3 Missense_Mutation p.E1023K 0.09 tolerated_low_confidence(0.1) benign(0.009) TCGA-AA-3984-01 X 54319462 54319462 C G WNK3 Missense_Mutation p.K632N 0.19 tolerated(0.16) benign(0.028) TCGA-AA-3984-01 X 54324822 54324822 G A WNK3 Missense_Mutation p.S395F 0.18 deleterious(0) probably_damaging(0.997) TCGA-AA-3984-01 X 54494328 54494328 C T FGD1 Missense_Mutation p.R410H 0.24 tolerated(0.15) probably_damaging(0.962) TCGA-AA-3984-01 X 54578345 54578345 G T GNL3L Missense_Mutation p.K373N 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-AA-3984-01 X 54955349 54955349 C T TRO Missense_Mutation p.A731V 0.16 tolerated(0.17) unknown(0) TCGA-AA-3984-01 X 54960258 54960258 G A PFKFB1 Missense_Mutation p.P451L 0.14 probably_damaging(0.993) TCGA-AA-3984-01 X 55032956 55032956 C T APEX2 Silent p.C215C 0.51 TCGA-AA-3984-01 X 55033178 55033178 C A APEX2 Silent p.T289T 0.10 TCGA-AA-3984-01 X 55035490 55035490 C T ALAS2 3'UTR 0.52 TCGA-AA-3984-01 X 55043977 55043977 C A ALAS2 Missense_Mutation p.E315D 0.08 tolerated(0.31) benign(0.063) TCGA-AA-3984-01 X 55046845 55046845 G A ALAS2 Missense_Mutation p.A244V 0.08 deleterious(0.01) probably_damaging(0.981) TCGA-AA-3984-01 X 55117814 55117814 G T PAGE2 Missense_Mutation p.E81D 0.46 tolerated(0.21) possibly_damaging(0.801) TCGA-AA-3984-01 X 55514135 55514135 G A USP51 Missense_Mutation p.S413L 0.08 tolerated(0.24) benign(0.008) TCGA-AA-3984-01 X 55650538 55650538 C T FOXR2 Missense_Mutation p.P132S 0.07 tolerated(0.39) benign(0.014) TCGA-AA-3984-01 X 56590499 56590499 T G UBQLN2 Missense_Mutation p.F65V 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-3984-01 X 56592711 56592711 G A UBQLN2 3'UTR 0.06 TCGA-AA-3984-01 X 57146226 57146226 T A SPIN2B 3'UTR 0.11 TCGA-AA-3984-01 X 57146366 57146366 C T SPIN2B Missense_Mutation p.E233K 0.22 tolerated(0.3) benign(0.017) TCGA-AA-3984-01 X 57621148 57621148 C T ZXDB 3'UTR 0.09 TCGA-AA-3984-01 X 57622416 57622416 T G ZXDB 3'UTR 0.19 TCGA-AA-3984-01 X 57623007 57623007 T G ZXDB 3'UTR 0.24 TCGA-AA-3984-01 X 57623421 57623421 A G ZXDB 3'UTR 0.48 TCGA-AA-3984-01 X 5810888 5810888 T C NLGN4X Silent p.L807L 0.07 TCGA-AA-3984-01 X 5811130 5811130 C T NLGN4X Missense_Mutation p.E727K 0.14 deleterious_low_confidence(0.01) benign(0.084) TCGA-AA-3984-01 X 5811293 5811293 G A NLGN4X Silent p.S672S 0.18 TCGA-AA-3984-01 X 5811554 5811554 C T NLGN4X Silent p.T585T 0.45 TCGA-AA-3984-01 X 6069178 6069178 G A NLGN4X Silent p.C110C 0.40 TCGA-AA-3984-01 X 62570024 62570024 C T SPIN4 Silent p.A225A 0.20 TCGA-AA-3984-01 X 62875563 62875563 A C ARHGEF9 Missense_Mutation p.Y371D 0.45 tolerated(0.1) possibly_damaging(0.675) TCGA-AA-3984-01 X 63409673 63409673 A G AMER1 3'UTR 0.27 TCGA-AA-3984-01 X 63412641 63412641 T C AMER1 Missense_Mutation p.I176V 0.25 deleterious(0.01) possibly_damaging(0.547) TCGA-AA-3984-01 X 64140043 64140043 C A ZC4H2 Nonsense_Mutation p.E106* 0.08 TCGA-AA-3984-01 X 64955211 64955211 G A MSN Missense_Mutation p.R293H 0.40 deleterious(0.02) benign(0.128) TCGA-AA-3984-01 X 65242085 65242085 C T VSIG4 3'UTR 0.08 TCGA-AA-3984-01 X 65390556 65390556 G A HEPH Silent p.T102T 0.07 TCGA-AA-3984-01 X 65824927 65824927 C T EDA2R Missense_Mutation p.A77T 0.07 tolerated(0.14) possibly_damaging(0.615) TCGA-AA-3984-01 X 69080797 69080797 T C EDA Intron 0.38 TCGA-AA-3984-01 X 69478534 69478534 C T P2RY4 Missense_Mutation p.R314Q 0.06 deleterious(0.03) probably_damaging(0.947) TCGA-AA-3984-01 X 69489988 69489988 C T ARR3 Nonsense_Mutation p.R47* 0.45 TCGA-AA-3984-01 X 69497974 69497974 C A ARR3 Missense_Mutation p.F251L 0.07 tolerated(0.15) benign(0.022) TCGA-AA-3984-01 X 69595165 69595165 G A KIF4A Silent p.E630E 0.13 TCGA-AA-3984-01 X 69668796 69668796 G A DLG3 Missense_Mutation p.E131K 0.24 tolerated(0.1) benign(0.022) TCGA-AA-3984-01 X 69719831 69719831 G A DLG3 Missense_Mutation p.E693K 0.24 deleterious(0) benign(0.246) TCGA-AA-3984-01 X 70073105 70073105 G A TEX11 Missense_Mutation p.A148V 0.13 deleterious(0) possibly_damaging(0.896) TCGA-AA-3984-01 X 70329211 70329211 G A IL2RG Silent p.F208F 0.14 TCGA-AA-3984-01 X 70345913 70345913 G A MED12 Missense_Mutation p.R817H 0.24 benign(0.416) TCGA-AA-3984-01 X 70467303 70467303 G A ZMYM3 Missense_Mutation p.R736C 0.22 deleterious(0) probably_damaging(0.938) TCGA-AA-3984-01 X 70470284 70470284 C T ZMYM3 Silent p.K357K 0.23 TCGA-AA-3984-01 X 70471429 70471429 C T ZMYM3 Silent p.A230A 0.20 TCGA-AA-3984-01 X 70518334 70518334 C T NONO Missense_Mutation p.R383W 0.23 deleterious(0) benign(0.008) TCGA-AA-3984-01 X 70823893 70823893 G A ACRC Missense_Mutation p.D256N 0.20 unknown(0) TCGA-AA-3984-01 X 70836469 70836469 C T CXCR3 Missense_Mutation p.A332T 0.15 tolerated(0.58) benign(0.005) TCGA-AA-3984-01 X 70836848 70836848 C T CXCR3 Silent p.Q205Q 0.18 TCGA-AA-3984-01 X 70837193 70837193 G A CXCR3 Silent p.C90C 0.23 TCGA-AA-3984-01 X 71350302 71350302 C T RGAG4 Silent p.R363R 0.10 TCGA-AA-3984-01 X 71359300 71359300 C A NHSL2 Missense_Mutation p.F634L 0.44 tolerated(0.08) benign(0.018) TCGA-AA-3984-01 X 71427103 71427103 C T ERCC6L Missense_Mutation p.R505Q 0.07 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 71864323 71864323 C A PHKA1 Nonsense_Mutation p.E450* 0.18 TCGA-AA-3984-01 X 72347270 72347270 G A NAP1L6 3'UTR 0.20 TCGA-AA-3984-01 X 72433716 72433716 C T NAP1L2 Missense_Mutation p.D205N 0.08 tolerated(0.05) benign(0.296) TCGA-AA-3984-01 X 72433916 72433916 C A NAP1L2 Missense_Mutation p.R138I 0.25 tolerated(0.13) probably_damaging(0.999) TCGA-AA-3984-01 X 72434485 72434485 A G NAP1L2 5'UTR 0.14 TCGA-AA-3984-01 X 72900807 72900807 C A CHIC1 Missense_Mutation p.F214L 0.38 deleterious(0.01) benign(0.391) TCGA-AA-3984-01 X 73751491 73751491 G A SLC16A2 3'UTR 0.53 TCGA-AA-3984-01 X 73959118 73959118 G T KIAA2022 3'UTR 0.75 TCGA-AA-3984-01 X 73962431 73962431 G T KIAA2022 Nonsense_Mutation p.S654* 0.44 TCGA-AA-3984-01 X 74273304 74273304 C A ABCB7 Missense_Mutation p.W721C 0.08 tolerated(0.17) possibly_damaging(0.693) TCGA-AA-3984-01 X 74280120 74280120 T G ABCB7 Missense_Mutation p.I662L 0.13 tolerated(0.35) benign(0.007) TCGA-AA-3984-01 X 74516222 74516222 G T UPRT Nonsense_Mutation p.E159* 0.08 TCGA-AA-3984-01 X 75392961 75392961 C T PBDC1 5'UTR 0.20 TCGA-AA-3984-01 X 75397585 75397585 G A PBDC1 Missense_Mutation p.G182R 0.05 tolerated_low_confidence(0.09) benign(0.003) TCGA-AA-3984-01 X 75651110 75651110 G A MAGEE1 Nonsense_Mutation p.W929* 0.48 TCGA-AA-3984-01 X 77041493 77041493 C T ATRX 5'UTR 0.21 TCGA-AA-3984-01 X 77131029 77131029 C A MAGT1 Missense_Mutation p.M88I 0.24 deleterious(0.03) benign(0.267) TCGA-AA-3984-01 X 77264722 77264722 G T ATP7A Nonsense_Mutation p.E611* 0.06 TCGA-AA-3984-01 X 77378737 77378737 G T PGK1 Missense_Mutation p.D268Y 0.39 deleterious(0) benign(0.385) TCGA-AA-3984-01 X 78010403 78010403 G T LPAR4 Missense_Mutation p.D13Y 0.18 tolerated_low_confidence(0.1) benign(0.137) TCGA-AA-3984-01 X 78010733 78010733 T G LPAR4 Missense_Mutation p.Y123D 0.43 deleterious(0.01) probably_damaging(1) TCGA-AA-3984-01 X 78010800 78010800 G A LPAR4 Missense_Mutation p.R145Q 0.09 deleterious(0.03) benign(0.168) TCGA-AA-3984-01 X 78011061 78011061 G A LPAR4 Missense_Mutation p.R232H 0.08 tolerated(0.06) possibly_damaging(0.557) TCGA-AA-3984-01 X 78216864 78216864 G A P2RY10 Missense_Mutation p.A283T 0.06 tolerated(0.93) benign(0.001) TCGA-AA-3984-01 X 78216927 78216927 C A P2RY10 Missense_Mutation p.L304I 0.39 tolerated(0.55) benign(0.116) TCGA-AA-3984-01 X 78217338 78217338 T G P2RY10 3'UTR 0.11 TCGA-AA-3984-01 X 78426868 78426868 T C GPR174 Missense_Mutation p.Y122H 0.07 tolerated(0.3) benign(0.016) TCGA-AA-3984-01 X 78427583 78427583 G T GPR174 3'UTR 0.15 TCGA-AA-3984-01 X 78618109 78618109 T G ITM2A Missense_Mutation p.K174T 0.08 deleterious(0.01) probably_damaging(0.934) TCGA-AA-3984-01 X 79281183 79281183 G A TBX22 Silent p.P180P 0.23 TCGA-AA-3984-01 X 79932215 79932215 A C BRWD3 Missense_Mutation p.F1768V 0.42 deleterious_low_confidence(0.04) unknown(0) TCGA-AA-3984-01 X 79932281 79932281 G A BRWD3 Nonsense_Mutation p.R1746* 0.43 TCGA-AA-3984-01 X 79932529 79932529 C A BRWD3 Missense_Mutation p.R1663I 0.47 deleterious_low_confidence(0) unknown(0) TCGA-AA-3984-01 X 79932704 79932704 C T BRWD3 Missense_Mutation p.E1605K 0.11 deleterious_low_confidence(0.02) benign(0.22) TCGA-AA-3984-01 X 79942391 79942391 G A BRWD3 Nonsense_Mutation p.R1326* 0.12 TCGA-AA-3984-01 X 79978255 79978255 T G BRWD3 Missense_Mutation p.Y561S 0.15 deleterious(0) probably_damaging(0.964) TCGA-AA-3984-01 X 80370603 80370603 C A HMGN5 Nonsense_Mutation p.E132* 0.05 TCGA-AA-3984-01 X 80370623 80370624 - G HMGN5 Frame_Shift_Ins p.N125Tfs*2 0.28 TCGA-AA-3984-01 X 82763421 82763421 C A POU3F4 Missense_Mutation p.P30H 0.42 deleterious(0.03) benign(0.416) TCGA-AA-3984-01 X 84362785 84362785 C T SATL1 Missense_Mutation p.R397K 0.43 tolerated(0.72) possibly_damaging(0.455) TCGA-AA-3984-01 X 84363758 84363758 C T SATL1 Missense_Mutation p.D73N 0.24 tolerated(0.45) benign(0) TCGA-AA-3984-01 X 85119622 85119622 T C CHM 3'UTR 0.09 TCGA-AA-3984-01 X 85219022 85219022 G A CHM Missense_Mutation p.A117V 0.08 tolerated(0.08) probably_damaging(0.999) TCGA-AA-3984-01 X 8522054 8522054 G A KAL1 Silent p.V431V 0.16 TCGA-AA-3984-01 X 8536330 8536330 G A KAL1 Missense_Mutation p.R384W 0.20 deleterious(0) possibly_damaging(0.905) TCGA-AA-3984-01 X 86069768 86069768 C T DACH2 Missense_Mutation p.R539C 0.35 deleterious(0.01) benign(0.05) TCGA-AA-3984-01 X 86890688 86890688 C T KLHL4 Missense_Mutation p.A613V 0.41 deleterious(0) benign(0.341) TCGA-AA-3984-01 X 86924473 86924473 G T KLHL4 3'UTR 0.26 TCGA-AA-3984-01 X 8766516 8766516 C A FAM9A Missense_Mutation p.K75N 0.26 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-AA-3984-01 X 88008465 88008465 A G CPXCR1 Missense_Mutation p.K17R 0.13 tolerated(0.13) possibly_damaging(0.801) TCGA-AA-3984-01 X 88008948 88008948 T C CPXCR1 Missense_Mutation p.I178T 0.42 tolerated(0.46) possibly_damaging(0.702) TCGA-AA-3984-01 X 89177711 89177711 G A TGIF2LX Silent p.E209E 0.18 TCGA-AA-3984-01 X 91090418 91090418 A G PCDH11X 5'UTR 0.27 TCGA-AA-3984-01 X 91090855 91090855 G T PCDH11X Nonsense_Mutation p.E118* 0.23 TCGA-AA-3984-01 X 91132720 91132720 A G PCDH11X Missense_Mutation p.D494G 0.39 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 91132869 91132869 G T PCDH11X Missense_Mutation p.D544Y 0.13 deleterious(0.01) possibly_damaging(0.656) TCGA-AA-3984-01 X 91132976 91132976 C T PCDH11X Silent p.V579V 0.07 TCGA-AA-3984-01 X 91133834 91133834 A G PCDH11X Missense_Mutation p.I865M 0.44 tolerated(0.24) benign(0.201) TCGA-AA-3984-01 X 91133907 91133907 G T PCDH11X Nonsense_Mutation p.E890* 0.41 TCGA-AA-3984-01 X 91133999 91133999 T C PCDH11X Silent p.N920N 0.08 TCGA-AA-3984-01 X 91137968 91137968 A C PCDH11X Intron 0.21 TCGA-AA-3984-01 X 92964521 92964521 A C FAM133A Missense_Mutation p.N35H 0.16 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AA-3984-01 X 92965335 92965335 T G FAM133A 3'UTR 0.24 TCGA-AA-3984-01 X 92965609 92965609 C A FAM133A 3'UTR 0.08 TCGA-AA-3984-01 X 92966182 92966182 G T FAM133A 3'UTR 0.18 TCGA-AA-3984-01 X 95993592 95993592 G A DIAPH2 Missense_Mutation p.R58Q 0.15 deleterious(0) unknown(0) TCGA-AA-3984-01 X 96167488 96167488 A C DIAPH2 Missense_Mutation p.E223D 0.42 tolerated(0.21) unknown(0) TCGA-AA-3984-01 X 96330187 96330187 G A DIAPH2 Missense_Mutation p.R725H 0.07 tolerated(0.2) probably_damaging(0.995) TCGA-AA-3984-01 X 96354732 96354732 G A DIAPH2 Missense_Mutation p.E763K 0.06 tolerated(0.79) possibly_damaging(0.75) TCGA-AA-3984-01 X 96502738 96502738 A G DIAPH2 Missense_Mutation p.N915S 0.05 tolerated(0.34) possibly_damaging(0.587) TCGA-AA-3984-01 X 99551849 99551849 C T PCDH19 Missense_Mutation p.R958Q 0.12 tolerated(0.32) benign(0.011) TCGA-AA-3984-01 X 99662040 99662040 C T PCDH19 Missense_Mutation p.R519Q 0.12 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 99663001 99663001 C T PCDH19 Missense_Mutation p.E199K 0.15 deleterious(0) probably_damaging(1) TCGA-AA-3984-01 X 99891489 99891489 G A TSPAN6 Intron 0.40 TCGA-AA-3984-01 X 99956231 99956231 G A SYTL4 Missense_Mutation p.R141C 0.07 deleterious(0) possibly_damaging(0.495) TCGA-AA-A00N-01 10 100995386 100995386 C A HPSE2 Missense_Mutation p.K58N 0.19 tolerated(0.1) benign(0.223) TCGA-AA-A00N-01 10 101147915 101147915 G A CNNM1 Missense_Mutation p.R844H 0.21 tolerated(0.13) benign(0.002) TCGA-AA-A00N-01 10 101439068 101439068 A C ENTPD7 Missense_Mutation p.N81T 0.19 tolerated(0.22) benign(0.014) TCGA-AA-A00N-01 10 101455842 101455842 G A ENTPD7 Missense_Mutation p.E325K 0.16 tolerated(0.06) possibly_damaging(0.532) TCGA-AA-A00N-01 10 101489326 101489326 G T COX15 Missense_Mutation p.L86I 0.20 tolerated(0.26) possibly_damaging(0.669) TCGA-AA-A00N-01 10 101551996 101551996 C T ABCC2 Silent p.F71F 0.25 TCGA-AA-A00N-01 10 101716439 101716439 G A DNMBP Silent p.F264F 0.29 TCGA-AA-A00N-01 10 102054770 102054770 G A PKD2L1 Silent p.F489F 0.17 TCGA-AA-A00N-01 10 103769756 103769756 C T C10orf76 Missense_Mutation p.A286T 0.26 tolerated(0.57) benign(0.004) TCGA-AA-A00N-01 10 103867963 103867963 C T LDB1 Missense_Mutation p.E375K 0.28 tolerated(0.23) possibly_damaging(0.651) TCGA-AA-A00N-01 10 103921618 103921618 G A NOLC1 Missense_Mutation p.R626Q 0.26 tolerated_low_confidence(0.06) unknown(0) TCGA-AA-A00N-01 10 104161523 104161523 A G NFKB2 Missense_Mutation p.D772G 0.23 tolerated(0.06) benign(0.027) TCGA-AA-A00N-01 10 104173753 104173753 A G PSD Silent p.F442F 0.06 TCGA-AA-A00N-01 10 104230835 104230835 G A TMEM180 Missense_Mutation p.R222Q 0.20 tolerated(0.58) benign(0.099) TCGA-AA-A00N-01 10 104233499 104233499 G A TMEM180 Splice_Site p.X366_splice 0.17 TCGA-AA-A00N-01 10 104268963 104268963 T C SUFU Missense_Mutation p.Y74H 0.12 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 10 104353465 104353465 C T SUFU Missense_Mutation p.R224W 0.16 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 10 104414867 104414867 C T TRIM8 Missense_Mutation p.R233W 0.12 deleterious(0) possibly_damaging(0.72) TCGA-AA-A00N-01 10 104638614 104638614 C T AS3MT Missense_Mutation p.R251C 0.05 tolerated(0.11) benign(0.022) TCGA-AA-A00N-01 10 104679127 104679129 AGG - CNNM2 In_Frame_Del p.E298del 0.15 TCGA-AA-A00N-01 10 104687143 104687143 G T CNNM2 Intron 0.26 TCGA-AA-A00N-01 10 104852972 104852972 C A NT5C2 Missense_Mutation p.K361N 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 10 105759667 105759667 G T SLK Missense_Mutation p.K275N 0.06 deleterious(0) probably_damaging(0.935) TCGA-AA-A00N-01 10 1058404 1058404 G T GTPBP4 Splice_Site p.X449_splice 0.15 TCGA-AA-A00N-01 10 105923959 105923959 G A WDR96 Nonsense_Mutation p.R1047* 0.18 TCGA-AA-A00N-01 10 105985225 105985225 G A WDR96 Missense_Mutation p.A137V 0.20 deleterious(0.01) benign(0.037) TCGA-AA-A00N-01 10 1060250 1060250 G A GTPBP4 Missense_Mutation p.D536N 0.20 tolerated(0.32) benign(0) TCGA-AA-A00N-01 10 106118239 106118240 - A CCDC147 Frame_Shift_Ins p.S53Vfs*3 0.12 TCGA-AA-A00N-01 10 1068668 1068668 G A IDI2 Nonsense_Mutation p.R64* 0.29 TCGA-AA-A00N-01 10 107005354 107005354 G A SORCS3 Missense_Mutation p.D975N 0.07 tolerated(0.76) benign(0) TCGA-AA-A00N-01 10 108380273 108380273 C A SORCS1 Missense_Mutation p.K903N 0.30 tolerated(0.05) possibly_damaging(0.802) TCGA-AA-A00N-01 10 112270105 112270105 C T DUSP5 Missense_Mutation p.S359L 0.16 deleterious(0) benign(0.312) TCGA-AA-A00N-01 10 112364110 112364110 C A SMC3 3'UTR 0.20 TCGA-AA-A00N-01 10 112559641 112559641 C T RBM20 Missense_Mutation p.R589W 0.11 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 10 1125981 1125981 G A WDR37 Missense_Mutation p.R89H 0.07 deleterious(0) benign(0.128) TCGA-AA-A00N-01 10 1139394 1139394 A C WDR37 Missense_Mutation p.N203H 0.13 deleterious(0.01) possibly_damaging(0.825) TCGA-AA-A00N-01 10 114911535 114911535 G T TCF7L2 Missense_Mutation p.K351N 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 10 114918433 114918433 C T TCF7L2 Intron 0.21 TCGA-AA-A00N-01 10 115343102 115343102 C A HABP2 Missense_Mutation p.P408T 0.15 tolerated(0.11) probably_damaging(0.969) TCGA-AA-A00N-01 10 115372127 115372127 C T NRAP Missense_Mutation p.A1122T 0.15 tolerated(0.48) benign(0) TCGA-AA-A00N-01 10 115374603 115374603 T G NRAP Missense_Mutation p.S1061R 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 10 115388751 115388751 C T NRAP Missense_Mutation p.M690I 0.13 deleterious(0) benign(0.097) TCGA-AA-A00N-01 10 115406696 115406696 C A NRAP Nonsense_Mutation p.E327* 0.23 TCGA-AA-A00N-01 10 115605532 115605532 G T DCLRE1A Missense_Mutation p.H764N 0.18 tolerated(0.06) benign(0.105) TCGA-AA-A00N-01 10 115609148 115609148 C A DCLRE1A Missense_Mutation p.E572D 0.27 deleterious(0.01) benign(0.32) TCGA-AA-A00N-01 10 115973338 115973338 G T TDRD1 Nonsense_Mutation p.E689* 0.17 TCGA-AA-A00N-01 10 115973843 115973843 G A TDRD1 Missense_Mutation p.E728K 0.27 deleterious(0.02) benign(0.083) TCGA-AA-A00N-01 10 115987858 115987858 T G TDRD1 Missense_Mutation p.F1171C 0.18 tolerated(0.06) probably_damaging(0.987) TCGA-AA-A00N-01 10 116059173 116059173 C T AFAP1L2 Silent p.E653E 0.07 TCGA-AA-A00N-01 10 11789354 11789354 C T ECHDC3 Silent p.I59I 0.27 TCGA-AA-A00N-01 10 118220558 118220558 G A PNLIPRP3 Missense_Mutation p.V216I 0.18 tolerated(0.12) possibly_damaging(0.621) TCGA-AA-A00N-01 10 118310654 118310654 G T PNLIP Missense_Mutation p.W123C 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 10 118425201 118425201 C T C10orf82 Silent p.P64P 0.06 TCGA-AA-A00N-01 10 11894014 11894014 G T PROSER2 5'UTR 0.40 TCGA-AA-A00N-01 10 119042937 119042937 T C PDZD8 Missense_Mutation p.T1103A 0.06 tolerated(0.13) benign(0.003) TCGA-AA-A00N-01 10 119044687 119044687 A C PDZD8 Missense_Mutation p.S519R 0.21 deleterious(0.01) possibly_damaging(0.701) TCGA-AA-A00N-01 10 119307577 119307577 T C EMX2 Missense_Mutation p.V198A 0.08 deleterious(0) probably_damaging(0.92) TCGA-AA-A00N-01 10 12071330 12071330 C A UPF2 Missense_Mutation p.D187Y 0.14 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 10 120793290 120793290 C T NANOS1 3'UTR 0.16 TCGA-AA-A00N-01 10 120818794 120818794 C A EIF3A Missense_Mutation p.R520I 0.27 deleterious(0) unknown(0) TCGA-AA-A00N-01 10 121203156 121203156 C T GRK5 Silent p.R386R 0.33 TCGA-AA-A00N-01 10 12129587 12129587 C T DHTKD1 Silent p.G192G 0.17 TCGA-AA-A00N-01 10 121692598 121692598 G A SEC23IP Missense_Mutation p.R947Q 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 10 123846600 123846600 G A TACC2 Missense_Mutation p.E1529K 0.23 benign(0.011) TCGA-AA-A00N-01 10 124013542 124013542 G A TACC2 Missense_Mutation p.E2940K 0.06 probably_damaging(1) TCGA-AA-A00N-01 10 124339135 124339135 G A DMBT1 Missense_Mutation p.D241N 0.24 tolerated(0.72) benign(0.28) TCGA-AA-A00N-01 10 124376761 124376761 C G DMBT1 Missense_Mutation p.R1497G 0.19 tolerated(0.4) benign(0.169) TCGA-AA-A00N-01 10 124380872 124380872 G A DMBT1 Missense_Mutation p.E1733K 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 10 124593209 124593209 G A CUZD1 Nonsense_Mutation p.R544* 0.24 TCGA-AA-A00N-01 10 124597054 124597054 G A CUZD1 Silent p.G155G 0.17 TCGA-AA-A00N-01 10 124742302 124742302 C A PSTK Missense_Mutation p.F90L 0.14 tolerated(0.3) benign(0.108) TCGA-AA-A00N-01 10 125521681 125521681 G T CPXM2 Missense_Mutation p.A495D 0.09 deleterious(0) possibly_damaging(0.903) TCGA-AA-A00N-01 10 125805846 125805846 G A CHST15 5'UTR 0.21 TCGA-AA-A00N-01 10 126672052 126672052 A G ZRANB1 Missense_Mutation p.E568G 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 10 126672077 126672077 G A ZRANB1 Silent p.P576P 0.17 TCGA-AA-A00N-01 10 127414363 127414363 G A EDRF1 Missense_Mutation p.E250K 0.26 tolerated(0.17) benign(0.155) TCGA-AA-A00N-01 10 127429632 127429632 T C EDRF1 Silent p.L745L 0.20 TCGA-AA-A00N-01 10 127438079 127438079 C T EDRF1 Silent p.C1074C 0.11 TCGA-AA-A00N-01 10 127678009 127678009 G A FANK1 Intron 0.18 TCGA-AA-A00N-01 10 127806646 127806646 C A ADAM12 Missense_Mutation p.K191N 0.18 tolerated(0.37) benign(0) TCGA-AA-A00N-01 10 128952186 128952186 G A FAM196A Missense_Mutation p.L396F 0.18 deleterious(0.05) possibly_damaging(0.564) TCGA-AA-A00N-01 10 12940488 12940488 C A CCDC3 Missense_Mutation p.E247D 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.875) TCGA-AA-A00N-01 10 129897390 129897390 A C MKI67 3'UTR 0.13 TCGA-AA-A00N-01 10 129901985 129901985 C T MKI67 Missense_Mutation p.E2707K 0.26 tolerated(1) benign(0) TCGA-AA-A00N-01 10 129906102 129906102 T G MKI67 Missense_Mutation p.Q1334H 0.17 tolerated(0.05) benign(0.003) TCGA-AA-A00N-01 10 13152355 13152355 G A OPTN Missense_Mutation p.R83H 0.26 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 10 131761649 131761649 G A EBF3 Silent p.D91D 0.06 TCGA-AA-A00N-01 10 13320332 13320332 C T PHYH Missense_Mutation p.R329Q 0.27 deleterious(0.05) benign(0.271) TCGA-AA-A00N-01 10 13337568 13337568 C A PHYH Missense_Mutation p.R58I 0.12 deleterious(0.01) benign(0.347) TCGA-AA-A00N-01 10 133930651 133930651 C T JAKMIP3 Missense_Mutation p.A69V 0.15 deleterious(0) benign(0.092) TCGA-AA-A00N-01 10 134161628 134161628 C T LRRC27 Missense_Mutation p.L232F 0.17 tolerated(1) probably_damaging(0.969) TCGA-AA-A00N-01 10 134646941 134646941 G A TTC40 Silent p.F2346F 0.23 TCGA-AA-A00N-01 10 135061080 135061080 G T MIR202HG Intron 0.28 TCGA-AA-A00N-01 10 135116432 135116432 C T TUBGCP2 Missense_Mutation p.R5Q 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-AA-A00N-01 10 135212714 135212714 G A MTG1 Missense_Mutation p.R135H 0.19 deleterious(0.01) benign(0.308) TCGA-AA-A00N-01 10 135352394 135352394 G A CYP2E1 Missense_Mutation p.D470N 0.06 tolerated(0.09) probably_damaging(1) TCGA-AA-A00N-01 10 13749074 13749074 C A FRMD4A Nonsense_Mutation p.E267* 0.17 TCGA-AA-A00N-01 10 14923599 14923599 A C SUV39H2 Silent p.L44L 0.32 TCGA-AA-A00N-01 10 15170395 15170395 C A NMT2 Missense_Mutation p.R318I 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-AA-A00N-01 10 15183425 15183425 G A NMT2 Missense_Mutation p.S81L 0.19 tolerated(0.35) benign(0.021) TCGA-AA-A00N-01 10 15649678 15649678 G A ITGA8 Nonsense_Mutation p.R588* 0.18 TCGA-AA-A00N-01 10 16957955 16957955 C A CUBN Missense_Mutation p.D2359Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 10 16960757 16960757 C T CUBN Silent p.S2288S 0.24 TCGA-AA-A00N-01 10 17686226 17686226 T C STAM 5'UTR 0.22 TCGA-AA-A00N-01 10 20534332 20534332 C T PLXDC2 Silent p.I457I 0.15 TCGA-AA-A00N-01 10 20568636 20568636 G A PLXDC2 Missense_Mutation p.R493H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A00N-01 10 21074778 21074778 G A NEBL Silent p.I981I 0.23 TCGA-AA-A00N-01 10 21250693 21250693 C T NEBL Missense_Mutation p.D55N 0.16 deleterious(0.02) probably_damaging(0.988) TCGA-AA-A00N-01 10 21784626 21784626 G A CASC10 Missense_Mutation p.A105V 0.13 tolerated_low_confidence(0.29) possibly_damaging(0.866) TCGA-AA-A00N-01 10 23250990 23250990 A C ARMC3 Missense_Mutation p.K239Q 0.20 tolerated(0.12) possibly_damaging(0.906) TCGA-AA-A00N-01 10 24762635 24762635 C T KIAA1217 Missense_Mutation p.A442V 0.19 tolerated(0.14) possibly_damaging(0.629) TCGA-AA-A00N-01 10 24832003 24832003 C T KIAA1217 Silent p.F1268F 0.30 TCGA-AA-A00N-01 10 24832967 24832967 C T KIAA1217 Missense_Mutation p.R1590C 0.20 deleterious(0) probably_damaging(0.961) TCGA-AA-A00N-01 10 25315497 25315497 T G THNSL1 3'UTR 0.28 TCGA-AA-A00N-01 10 25839968 25839968 C T GPR158 Missense_Mutation p.L490F 0.17 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 10 25883206 25883206 G T GPR158 Intron 0.25 TCGA-AA-A00N-01 10 25885597 25885597 G A GPR158 Missense_Mutation p.R675Q 0.22 deleterious(0.03) possibly_damaging(0.579) TCGA-AA-A00N-01 10 26385527 26385527 A G MYO3A Silent p.V564V 0.06 TCGA-AA-A00N-01 10 26446395 26446395 C T MYO3A Nonsense_Mutation p.R984* 0.20 TCGA-AA-A00N-01 10 26463040 26463040 A C MYO3A Missense_Mutation p.K1283Q 0.18 tolerated_low_confidence(0.32) benign(0.002) TCGA-AA-A00N-01 10 26800678 26800678 C T APBB1IP Silent p.L178L 0.29 TCGA-AA-A00N-01 10 26825090 26825090 C T APBB1IP Missense_Mutation p.R330C 0.12 deleterious(0) possibly_damaging(0.88) TCGA-AA-A00N-01 10 27294607 27294607 G T ANKRD26 Missense_Mutation p.S1682Y 0.18 deleterious(0.03) possibly_damaging(0.742) TCGA-AA-A00N-01 10 27311494 27311494 T C ANKRD26 Missense_Mutation p.K1403R 0.19 tolerated(0.45) benign(0.032) TCGA-AA-A00N-01 10 27311576 27311576 C T ANKRD26 Missense_Mutation p.E1376K 0.20 tolerated(0.14) benign(0.022) TCGA-AA-A00N-01 10 27411836 27411836 C A YME1L1 Missense_Mutation p.R447I 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 10 27436574 27436574 C T YME1L1 Silent p.T64T 0.04 TCGA-AA-A00N-01 10 27538689 27538689 G A RP11-85G18.6 Intron 0.08 TCGA-AA-A00N-01 10 27688012 27688012 A C PTCHD3 Missense_Mutation p.I505M 0.16 deleterious(0.02) possibly_damaging(0.521) TCGA-AA-A00N-01 10 27688033 27688033 G A PTCHD3 Silent p.I498I 0.17 TCGA-AA-A00N-01 10 28272885 28272885 G A ARMC4 Nonsense_Mutation p.R236* 0.08 TCGA-AA-A00N-01 10 29783924 29783924 C T SVIL Missense_Mutation p.E1254K 0.11 tolerated(0.22) benign(0.233) TCGA-AA-A00N-01 10 30316271 30316271 G A KIAA1462 Missense_Mutation p.R936C 0.26 deleterious(0.03) possibly_damaging(0.784) TCGA-AA-A00N-01 10 30317421 30317421 G A KIAA1462 Silent p.C552C 0.15 TCGA-AA-A00N-01 10 30318409 30318409 G A KIAA1462 Missense_Mutation p.S223F 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-AA-A00N-01 10 31137713 31137713 G A ZNF438 Missense_Mutation p.R541C 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-AA-A00N-01 10 32101702 32101702 T G ARHGAP12 Missense_Mutation p.K628N 0.15 tolerated(0.11) benign(0.004) TCGA-AA-A00N-01 10 32197508 32197508 C T ARHGAP12 Silent p.T92T 0.17 TCGA-AA-A00N-01 10 32304463 32304463 T G KIF5B Missense_Mutation p.Q962H 0.15 deleterious_low_confidence(0) benign(0.069) TCGA-AA-A00N-01 10 32304483 32304483 G A KIF5B Nonsense_Mutation p.R956* 0.18 TCGA-AA-A00N-01 10 32323760 32323760 T G KIF5B Missense_Mutation p.K323N 0.25 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 10 33209282 33209282 C T ITGB1 Missense_Mutation p.G387D 0.21 tolerated(0.12) benign(0.034) TCGA-AA-A00N-01 10 33218856 33218856 C A ITGB1 Missense_Mutation p.K90N 0.15 tolerated(0.56) benign(0.001) TCGA-AA-A00N-01 10 35484938 35484938 T G CREM Intron 0.15 TCGA-AA-A00N-01 10 35805548 35805548 A C CCNY Missense_Mutation p.K121T 0.25 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 10 38406336 38406336 G T ZNF37A Missense_Mutation p.R86I 0.15 tolerated(0.2) benign(0.202) TCGA-AA-A00N-01 10 38406698 38406698 G T ZNF37A Nonsense_Mutation p.E207* 0.29 TCGA-AA-A00N-01 10 38406884 38406884 A C ZNF37A Missense_Mutation p.K269Q 0.23 deleterious(0) benign(0.031) TCGA-AA-A00N-01 10 42905525 42905525 C A CCNYL2 RNA 0.17 TCGA-AA-A00N-01 10 42916215 42916215 C A CCNYL2 RNA 0.10 TCGA-AA-A00N-01 10 43617403 43617403 C T RET Missense_Mutation p.P914S 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 10 43693508 43693508 A G RASGEF1A Missense_Mutation p.Y390H 0.04 deleterious(0.02) possibly_damaging(0.513) TCGA-AA-A00N-01 10 43882943 43882943 G T HNRNPF Missense_Mutation p.F130L 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 10 45407013 45407013 G A TMEM72 Missense_Mutation p.G18D 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 10 45602416 45602416 T C RSU1P2 RNA 0.31 TCGA-AA-A00N-01 10 45602565 45602565 G A RSU1P2 RNA 0.23 TCGA-AA-A00N-01 10 45798865 45798865 A C OR13A1 3'UTR 0.17 TCGA-AA-A00N-01 10 45799430 45799430 C T OR13A1 Silent p.P147P 0.22 TCGA-AA-A00N-01 10 45940971 45940971 T C ALOX5 Missense_Mutation p.Y621H 0.20 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 10 46159202 46159202 T G ZFAND4 5'UTR 0.19 TCGA-AA-A00N-01 10 46959820 46959820 C A SYT15 3'Flank 0.18 TCGA-AA-A00N-01 10 48428731 48428731 G A GDF10 Silent p.F385F 0.17 TCGA-AA-A00N-01 10 49452879 49452879 G T FRMPD2 Missense_Mutation p.S108Y 0.20 deleterious(0) possibly_damaging(0.903) TCGA-AA-A00N-01 10 49459745 49459745 G T FRMPD2 Intron 0.27 TCGA-AA-A00N-01 10 49943962 49943962 G T WDFY4 Missense_Mutation p.K575N 0.20 tolerated(0.08) probably_damaging(0.993) TCGA-AA-A00N-01 10 50011375 50011375 C A WDFY4 Silent p.S1485S 0.28 TCGA-AA-A00N-01 10 50028406 50028406 C T WDFY4 Missense_Mutation p.T1878M 0.20 tolerated(1) benign(0.001) TCGA-AA-A00N-01 10 50311695 50311695 C T VSTM4 Intron 0.39 TCGA-AA-A00N-01 10 50531118 50531118 C T C10orf71 Silent p.F176F 0.21 TCGA-AA-A00N-01 10 50678848 50678848 C T ERCC6 Missense_Mutation p.R1053H 0.24 tolerated(0.6) benign(0) TCGA-AA-A00N-01 10 50724387 50724387 C A ERCC6-PGBD3 Missense_Mutation p.M726I 0.19 tolerated_low_confidence(0.28) unknown(0) TCGA-AA-A00N-01 10 50819702 50819702 G A SLC18A3 Missense_Mutation p.A306T 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 10 50835656 50835656 C A CHAT Missense_Mutation p.F312L 0.24 tolerated(0.05) possibly_damaging(0.575) TCGA-AA-A00N-01 10 51027413 51027413 G A PARG Silent p.D483D 0.23 TCGA-AA-A00N-01 10 51224869 51224869 G A AGAP8 3'UTR 0.46 TCGA-AA-A00N-01 10 51585586 51585586 G A NCOA4 Missense_Mutation p.R578Q 0.13 deleterious(0.01) benign(0.424) TCGA-AA-A00N-01 10 51826378 51826378 G A FAM21A 5'Flank 0.55 TCGA-AA-A00N-01 10 52390107 52390107 C T RP11-50E11.3 RNA 0.14 TCGA-AA-A00N-01 10 52619617 52619617 T G A1CF 5'UTR 0.16 TCGA-AA-A00N-01 10 53459041 53459041 T C CSTF2T Missense_Mutation p.D90G 0.14 deleterious(0.02) probably_damaging(0.983) TCGA-AA-A00N-01 10 55568798 55568798 A G PCDH15 Missense_Mutation p.V605A 0.29 tolerated_low_confidence(0.14) unknown(0) TCGA-AA-A00N-01 10 55996666 55996666 G A PCDH15 Missense_Mutation p.T301M 0.08 deleterious(0.03) probably_damaging(0.957) TCGA-AA-A00N-01 10 5791698 5791698 G A FAM208B Missense_Mutation p.R2105Q 0.21 deleterious(0.04) possibly_damaging(0.554) TCGA-AA-A00N-01 10 58119855 58119855 C T ZWINT Silent p.A60A 0.22 TCGA-AA-A00N-01 10 5995029 5995029 G A IL15RA 3'UTR 0.26 TCGA-AA-A00N-01 10 61029749 61029749 G A FAM13C Missense_Mutation p.S238L 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 10 61824047 61824047 C A ANK3 Splice_Site p.X4107_splice 0.29 TCGA-AA-A00N-01 10 61946495 61946495 G A ANK3 Missense_Mutation p.A688V 0.18 possibly_damaging(0.823) TCGA-AA-A00N-01 10 6265970 6265970 G A PFKFB3 Silent p.T421T 0.33 TCGA-AA-A00N-01 10 64914042 64914042 G T NRBF2 3'UTR 0.30 TCGA-AA-A00N-01 10 68526062 68526062 T C CTNNA3 Missense_Mutation p.Y414C 0.24 tolerated(0.1) probably_damaging(0.936) TCGA-AA-A00N-01 10 68688015 68688015 G A LRRTM3 Silent p.A447A 0.23 TCGA-AA-A00N-01 10 68857538 68857538 A C LRRTM3 Missense_Mutation p.K577T 0.17 tolerated_low_confidence(0.37) benign(0) TCGA-AA-A00N-01 10 69565346 69565346 G T DNAJC12 Missense_Mutation p.S166Y 0.05 tolerated(0.08) benign(0.077) TCGA-AA-A00N-01 10 69672420 69672420 G A SIRT1 Missense_Mutation p.R516Q 0.21 tolerated(0.05) benign(0.266) TCGA-AA-A00N-01 10 69934260 69934260 G A MYPN Missense_Mutation p.G804E 0.23 tolerated(0.91) benign(0.138) TCGA-AA-A00N-01 10 70176472 70176472 T G DNA2 Missense_Mutation p.E1122D 0.21 deleterious(0.01) possibly_damaging(0.755) TCGA-AA-A00N-01 10 70178874 70178874 C T DNA2 Missense_Mutation p.E1048K 0.27 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 10 70202679 70202679 C T DNA2 Silent p.S556S 0.23 TCGA-AA-A00N-01 10 70405744 70405744 G A TET1 Silent p.S1086S 0.22 TCGA-AA-A00N-01 10 70406065 70406065 G A TET1 Silent p.S1193S 0.06 TCGA-AA-A00N-01 10 70426804 70426804 T G TET1 Silent p.V1488V 0.16 TCGA-AA-A00N-01 10 70694577 70694577 G A DDX50 Missense_Mutation p.R475H 0.18 deleterious(0.01) possibly_damaging(0.832) TCGA-AA-A00N-01 10 70775381 70775381 C T KIAA1279 Missense_Mutation p.R359W 0.20 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 10 70856932 70856932 G A SRGN Missense_Mutation p.E58K 0.14 tolerated(0.09) benign(0.037) TCGA-AA-A00N-01 10 708734 708734 A G DIP2C Intron 0.20 TCGA-AA-A00N-01 10 70992832 70992832 G T HKDC1 Missense_Mutation p.K146N 0.20 deleterious(0.01) possibly_damaging(0.591) TCGA-AA-A00N-01 10 71968985 71968985 T C PPA1 Missense_Mutation p.K234R 0.22 tolerated(0.08) benign(0.019) TCGA-AA-A00N-01 10 7205774 7205774 G A SFMBT2 Silent p.I881I 0.24 TCGA-AA-A00N-01 10 72534107 72534107 T C TBATA Missense_Mutation p.D260G 0.22 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 10 72543210 72543210 T G TBATA 5'UTR 0.32 TCGA-AA-A00N-01 10 72619186 72619186 G A SGPL1 Missense_Mutation p.R182H 0.32 tolerated(0.12) probably_damaging(0.999) TCGA-AA-A00N-01 10 73558989 73558989 C T CDH23 Silent p.I152I 0.21 TCGA-AA-A00N-01 10 73567144 73567144 C T CDH23 Silent p.I523I 0.25 TCGA-AA-A00N-01 10 74114686 74114686 G A DNAJB12 Silent p.S24S 0.34 TCGA-AA-A00N-01 10 74908075 74908075 C T ECD Missense_Mutation p.A334T 0.21 tolerated(0.53) benign(0.023) TCGA-AA-A00N-01 10 75204501 75204501 G A PPP3CB Missense_Mutation p.R451W 0.27 deleterious(0.01) possibly_damaging(0.757) TCGA-AA-A00N-01 10 75394397 75394397 C T MYOZ1 Missense_Mutation p.S116N 0.24 tolerated(0.51) benign(0.005) TCGA-AA-A00N-01 10 7682735 7682735 T G ITIH5 Missense_Mutation p.K128T 0.23 deleterious(0.02) benign(0.02) TCGA-AA-A00N-01 10 7682775 7682775 C A ITIH5 Nonsense_Mutation p.E115* 0.19 TCGA-AA-A00N-01 10 76863703 76863703 C T DUSP13 Intron 0.29 TCGA-AA-A00N-01 10 77167416 77167416 C T RP11-399K21.14 5'Flank 0.16 TCGA-AA-A00N-01 10 7762890 7762890 C T ITIH2 Silent p.F234F 0.27 TCGA-AA-A00N-01 10 7811293 7811293 A G KIN Silent p.S228S 0.26 TCGA-AA-A00N-01 10 78637487 78637487 C T KCNMA1 3'UTR 0.30 TCGA-AA-A00N-01 10 78649212 78649212 T G KCNMA1 Missense_Mutation p.K1136T 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 10 78713641 78713641 T C KCNMA1 Missense_Mutation p.N743S 0.23 tolerated(0.29) benign(0.008) TCGA-AA-A00N-01 10 79397107 79397107 G T KCNMA1 Missense_Mutation p.F98L 0.20 deleterious(0.03) probably_damaging(0.978) TCGA-AA-A00N-01 10 79796992 79796992 G A RPS24 Missense_Mutation p.R107Q 0.06 tolerated_low_confidence(0.12) benign(0.119) TCGA-AA-A00N-01 10 81274107 81274107 A T EIF5AL1 3'UTR 0.26 TCGA-AA-A00N-01 10 81275580 81275580 C A EIF5AL1 3'UTR 0.10 TCGA-AA-A00N-01 10 81319091 81319091 A G SFTPA2 Missense_Mutation p.V50A 0.16 tolerated(0.11) benign(0.032) TCGA-AA-A00N-01 10 82034333 82034333 C T MAT1A Missense_Mutation p.R343Q 0.21 tolerated(0.29) benign(0.001) TCGA-AA-A00N-01 10 82036269 82036269 C T MAT1A Missense_Mutation p.E211K 0.20 tolerated(0.08) benign(0.021) TCGA-AA-A00N-01 10 85985239 85985239 A G LRIT2 Missense_Mutation p.V13A 0.22 tolerated(0.39) benign(0.001) TCGA-AA-A00N-01 10 87362424 87362424 C T GRID1 Missense_Mutation p.R879H 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A00N-01 10 88419766 88419766 C T OPN4 Silent p.F316F 0.05 TCGA-AA-A00N-01 10 88452319 88452319 G A LDB3 Missense_Mutation p.R364Q 0.20 tolerated(0.2) probably_damaging(0.942) TCGA-AA-A00N-01 10 88478598 88478598 G A LDB3 Missense_Mutation p.E663K 0.08 deleterious(0) probably_damaging(0.983) TCGA-AA-A00N-01 10 88730324 88730324 C T ADIRF Silent p.F72F 0.24 TCGA-AA-A00N-01 10 89501115 89501115 G T PAPSS2 Nonsense_Mutation p.E404* 0.27 TCGA-AA-A00N-01 10 91190282 91190282 C A SLC16A12 3'UTR 0.12 TCGA-AA-A00N-01 10 91353658 91353658 C T PANK1 Missense_Mutation p.D467N 0.25 tolerated(0.09) probably_damaging(0.998) TCGA-AA-A00N-01 10 91486236 91486236 G A KIF20B Missense_Mutation p.E690K 0.18 deleterious(0) possibly_damaging(0.828) TCGA-AA-A00N-01 10 91497569 91497569 G A KIF20B Missense_Mutation p.E951K 0.16 tolerated(0.12) benign(0.02) TCGA-AA-A00N-01 10 92672493 92672493 A T ANKRD1 3'UTR 0.21 TCGA-AA-A00N-01 10 92672592 92672592 A G ANKRD1 3'UTR 0.15 TCGA-AA-A00N-01 10 93244350 93244350 T G HECTD2 Missense_Mutation p.F303C 0.37 deleterious(0.01) possibly_damaging(0.662) TCGA-AA-A00N-01 10 93389711 93389711 T G PPP1R3C Missense_Mutation p.R309S 0.19 tolerated(0.08) benign(0.027) TCGA-AA-A00N-01 10 93695422 93695422 G A BTAF1 Missense_Mutation p.R8H 0.21 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 10 93767941 93767941 G A BTAF1 Missense_Mutation p.R1241Q 0.25 deleterious(0.04) possibly_damaging(0.663) TCGA-AA-A00N-01 10 93952356 93952356 G A CPEB3 Missense_Mutation p.S348L 0.26 deleterious(0) benign(0.154) TCGA-AA-A00N-01 10 94669348 94669348 G A EXOC6 Missense_Mutation p.R208Q 0.22 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 10 94757241 94757241 C T EXOC6 Missense_Mutation p.A655V 0.33 deleterious(0) possibly_damaging(0.457) TCGA-AA-A00N-01 10 95082895 95082895 T C MYOF Missense_Mutation p.D1799G 0.20 deleterious(0) possibly_damaging(0.582) TCGA-AA-A00N-01 10 95111508 95111508 C T MYOF Missense_Mutation p.D1193N 0.12 tolerated(1) benign(0.01) TCGA-AA-A00N-01 10 95422929 95422929 G A PDE6C Missense_Mutation p.E838K 0.35 tolerated(1) benign(0.001) TCGA-AA-A00N-01 10 96066401 96066401 C T PLCE1 Missense_Mutation p.A1947V 0.13 tolerated(0.18) benign(0.033) TCGA-AA-A00N-01 10 96253163 96253163 G A TBC1D12 Missense_Mutation p.R418Q 0.27 tolerated(0.06) possibly_damaging(0.89) TCGA-AA-A00N-01 10 96256889 96256889 G A TBC1D12 Missense_Mutation p.V458I 0.26 tolerated(0.12) probably_damaging(0.99) TCGA-AA-A00N-01 10 96317911 96317911 G T HELLS Nonsense_Mutation p.E98* 0.19 TCGA-AA-A00N-01 10 97397089 97397089 G A ALDH18A1 Silent p.S136S 0.20 TCGA-AA-A00N-01 10 97516051 97516051 A C ENTPD1 Intron 0.15 TCGA-AA-A00N-01 10 97624583 97624583 G A ENTPD1 Missense_Mutation p.A443T 0.31 tolerated(0.39) benign(0.012) TCGA-AA-A00N-01 10 97769663 97769663 C A CC2D2B Missense_Mutation p.L35I 0.07 tolerated(0.74) possibly_damaging(0.599) TCGA-AA-A00N-01 10 97918625 97918625 A G ZNF518A RNA 0.09 TCGA-AA-A00N-01 10 97922058 97922058 T C ZNF518A RNA 0.21 TCGA-AA-A00N-01 10 97923128 97923128 C T ZNF518A RNA 0.21 TCGA-AA-A00N-01 10 98165088 98165088 C T TLL2 Missense_Mutation p.V390I 0.08 tolerated(0.74) benign(0.007) TCGA-AA-A00N-01 10 98392774 98392774 A C PIK3AP1 Intron 0.18 TCGA-AA-A00N-01 10 98742606 98742606 G A C10orf12 Missense_Mutation p.E487K 0.20 tolerated(0.39) possibly_damaging(0.685) TCGA-AA-A00N-01 10 98745272 98745272 G A C10orf12 3'UTR 0.18 TCGA-AA-A00N-01 10 98794273 98794273 G A SLIT1 Missense_Mutation p.S798F 0.22 tolerated(0.21) probably_damaging(0.999) TCGA-AA-A00N-01 10 98825787 98825787 G A SLIT1 Missense_Mutation p.T157M 0.19 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 10 99196219 99196219 C T EXOSC1 Missense_Mutation p.E191K 0.20 tolerated(0.07) benign(0.006) TCGA-AA-A00N-01 10 99215386 99215386 T C ZDHHC16 Intron 0.14 TCGA-AA-A00N-01 10 99655723 99655723 G A CRTAC1 Silent p.F412F 0.11 TCGA-AA-A00N-01 10 99770898 99770898 G A CRTAC1 Missense_Mutation p.A74V 0.25 tolerated(0.09) probably_damaging(0.976) TCGA-AA-A00N-01 11 100912815 100912815 C T PGR Missense_Mutation p.R836Q 0.15 deleterious(0.01) benign(0.105) TCGA-AA-A00N-01 11 101344346 101344346 A C TRPC6 Missense_Mutation p.F635V 0.09 tolerated(0.08) probably_damaging(0.996) TCGA-AA-A00N-01 11 101793451 101793451 C T KIAA1377 Nonsense_Mutation p.R70* 0.15 TCGA-AA-A00N-01 11 101833400 101833400 C T KIAA1377 Missense_Mutation p.S545F 0.18 deleterious(0) possibly_damaging(0.704) TCGA-AA-A00N-01 11 102398360 102398360 G A MMP7 Nonsense_Mutation p.R127* 0.20 TCGA-AA-A00N-01 11 102589167 102589167 G A MMP8 Silent p.I254I 0.23 TCGA-AA-A00N-01 11 102593330 102593330 G A MMP8 Silent p.I59I 0.14 TCGA-AA-A00N-01 11 1026416 1026416 C T MUC6 Silent p.G819G 0.23 TCGA-AA-A00N-01 11 102706902 102706902 C A MMP3 Missense_Mutation p.K463N 0.07 deleterious(0.04) benign(0.129) TCGA-AA-A00N-01 11 1027163 1027163 C T MUC6 Silent p.P754P 0.29 TCGA-AA-A00N-01 11 104874050 104874050 A C CASP5 Missense_Mutation p.L178R 0.10 deleterious(0.01) possibly_damaging(0.676) TCGA-AA-A00N-01 11 104877972 104877972 C T CASP5 Missense_Mutation p.D104N 0.23 tolerated(1) benign(0.028) TCGA-AA-A00N-01 11 104879678 104879678 T G CASP5 Missense_Mutation p.N26H 0.11 deleterious_low_confidence(0.05) possibly_damaging(0.844) TCGA-AA-A00N-01 11 10580570 10580570 C A LYVE1 3'UTR 0.18 TCGA-AA-A00N-01 11 105880290 105880290 C T MSANTD4 Missense_Mutation p.R337Q 0.19 tolerated(1) benign(0.007) TCGA-AA-A00N-01 11 105923888 105923888 T C KBTBD3 Missense_Mutation p.T510A 0.32 tolerated(0.43) benign(0.243) TCGA-AA-A00N-01 11 105924210 105924210 G A KBTBD3 Silent p.L402L 0.25 TCGA-AA-A00N-01 11 107325241 107325242 CT A CWF19L2 Frame_Shift_Del p.K91Nfs*46 0.16 TCGA-AA-A00N-01 11 107501189 107501189 C T ELMOD1 Missense_Mutation p.R22C 0.24 tolerated(0.18) probably_damaging(0.998) TCGA-AA-A00N-01 11 107501440 107501440 G A ELMOD1 Missense_Mutation p.D60N 0.15 tolerated(0.31) benign(0.013) TCGA-AA-A00N-01 11 107521627 107521627 G T ELMOD1 Nonsense_Mutation p.E214* 0.17 TCGA-AA-A00N-01 11 1075663 1075663 G A MUC2 Missense_Mutation p.R30Q 0.26 benign(0.099) TCGA-AA-A00N-01 11 107578521 107578521 C T SLN 3'UTR 0.21 TCGA-AA-A00N-01 11 10789919 10789919 C T CTR9 Missense_Mutation p.R664C 0.24 deleterious(0.03) probably_damaging(0.985) TCGA-AA-A00N-01 11 107923519 107923519 G T CUL5 Nonsense_Mutation p.E182* 0.19 TCGA-AA-A00N-01 11 108043387 108043387 G A NPAT Missense_Mutation p.S775F 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 11 108121623 108121623 G T ATM Missense_Mutation p.K477N 0.18 deleterious(0.04) probably_damaging(0.917) TCGA-AA-A00N-01 11 108172385 108172385 C T ATM Nonsense_Mutation p.R1730* 0.29 TCGA-AA-A00N-01 11 108188130 108188130 C A ATM Missense_Mutation p.L2077I 0.21 deleterious(0.01) possibly_damaging(0.792) TCGA-AA-A00N-01 11 10823859 10823859 T G EIF4G2 Missense_Mutation p.M374L 0.18 tolerated(0.37) benign(0.189) TCGA-AA-A00N-01 11 108381680 108381680 C T EXPH5 Silent p.Q1518Q 0.17 TCGA-AA-A00N-01 11 108383470 108383470 C A EXPH5 Nonsense_Mutation p.E922* 0.21 TCGA-AA-A00N-01 11 108385508 108385508 G A EXPH5 Silent p.F242F 0.22 TCGA-AA-A00N-01 11 10875255 10875255 T G ZBED5 Missense_Mutation p.K413T 0.21 tolerated(0.25) benign(0.084) TCGA-AA-A00N-01 11 109296139 109296140 - A C11orf87 3'UTR 0.14 TCGA-AA-A00N-01 11 110007877 110007877 A G ZC3H12C Missense_Mutation p.K171E 0.19 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 11 110451072 110451072 C A ARHGAP20 Missense_Mutation p.K866N 0.20 tolerated(0.13) benign(0.038) TCGA-AA-A00N-01 11 110457040 110457040 G A ARHGAP20 Nonsense_Mutation p.R439* 0.19 TCGA-AA-A00N-01 11 110461484 110461484 A G ARHGAP20 Missense_Mutation p.F398S 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 111156705 111156705 C T C11orf53 Missense_Mutation p.H213Y 0.19 deleterious(0.03) possibly_damaging(0.533) TCGA-AA-A00N-01 11 111167694 111167694 C A COLCA1 5'UTR 0.21 TCGA-AA-A00N-01 11 111167764 111167764 G A COLCA1 5'UTR 0.23 TCGA-AA-A00N-01 11 111386778 111386778 C A C11orf88 Silent p.I94I 0.21 TCGA-AA-A00N-01 11 111746123 111746123 A G FDXACB1 Silent p.I466I 0.21 TCGA-AA-A00N-01 11 111896434 111896434 T C DLAT Missense_Mutation p.S80P 0.24 tolerated(0.12) benign(0.001) TCGA-AA-A00N-01 11 111934920 111934920 G A PIH1D2 3'Flank 0.25 TCGA-AA-A00N-01 11 111942470 111942470 T G PIH1D2 Missense_Mutation p.K64Q 0.23 tolerated(0.08) possibly_damaging(0.593) TCGA-AA-A00N-01 11 113102999 113102999 C T NCAM1 Missense_Mutation p.R499W 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 11 113211429 113211429 C A TTC12 Silent p.I290I 0.20 TCGA-AA-A00N-01 11 113270701 113270701 C T ANKK1 Silent p.S670S 0.19 TCGA-AA-A00N-01 11 113698036 113698036 C A USP28 Missense_Mutation p.R369I 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 113813713 113813713 C T HTR3B Missense_Mutation p.R236C 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 11 113856847 113856847 C T HTR3A Missense_Mutation p.R225W 0.22 tolerated(0.26) possibly_damaging(0.84) TCGA-AA-A00N-01 11 113934368 113934368 G A ZBTB16 Missense_Mutation p.E116K 0.15 deleterious(0.01) probably_damaging(0.939) TCGA-AA-A00N-01 11 114270820 114270820 T G C11orf71 Silent p.P78P 0.20 TCGA-AA-A00N-01 11 114278339 114278339 C A RBM7 Missense_Mutation p.S204Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 11 115047275 115047275 G A CADM1 Silent p.D416D 0.23 TCGA-AA-A00N-01 11 115102187 115102187 C T CADM1 Missense_Mutation p.D150N 0.06 tolerated(0.43) benign(0.183) TCGA-AA-A00N-01 11 116631476 116631476 C T BUD13 Missense_Mutation p.R410Q 0.18 deleterious(0.04) probably_damaging(0.982) TCGA-AA-A00N-01 11 116798018 116798018 A C SIK3 Missense_Mutation p.F120C 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 11 117073766 117073766 G A TAGLN Missense_Mutation p.E13K 0.16 deleterious(0) possibly_damaging(0.696) TCGA-AA-A00N-01 11 117160329 117160329 G A BACE1 Missense_Mutation p.R487C 0.35 deleterious(0) possibly_damaging(0.886) TCGA-AA-A00N-01 11 117389258 117389258 C T DSCAML1 Missense_Mutation p.R538H 0.28 deleterious(0.02) possibly_damaging(0.765) TCGA-AA-A00N-01 11 117395557 117395557 G A DSCAML1 Silent p.F360F 0.26 TCGA-AA-A00N-01 11 118183553 118183553 G A CD3E Silent p.A108A 0.16 TCGA-AA-A00N-01 11 118209930 118209930 G A CD3D Nonsense_Mutation p.R155* 0.22 TCGA-AA-A00N-01 11 118220500 118220500 C T CD3G Missense_Mutation p.S41L 0.18 tolerated(0.09) benign(0.091) TCGA-AA-A00N-01 11 118243292 118243292 G A UBE4A Missense_Mutation p.R211Q 0.16 tolerated(0.14) benign(0.392) TCGA-AA-A00N-01 11 118509956 118509956 C T PHLDB1 Missense_Mutation p.S908L 0.17 deleterious(0.02) benign(0.009) TCGA-AA-A00N-01 11 118627025 118627025 C T DDX6 Missense_Mutation p.R373Q 0.15 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 118766337 118766337 C T BCL9L 3'UTR 0.29 TCGA-AA-A00N-01 11 118895477 118895477 C T SLC37A4 3'UTR 0.28 TCGA-AA-A00N-01 11 119027602 119027602 G A ABCG4 Missense_Mutation p.E316K 0.24 deleterious(0.03) possibly_damaging(0.862) TCGA-AA-A00N-01 11 119216170 119216170 G A MFRP Missense_Mutation p.R201C 0.25 tolerated(0.06) probably_damaging(0.991) TCGA-AA-A00N-01 11 119243904 119243904 G A USP2 Missense_Mutation p.T96I 0.22 tolerated_low_confidence(0.23) benign(0.287) TCGA-AA-A00N-01 11 120329939 120329939 T C ARHGEF12 Missense_Mutation p.F813L 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 11 120702686 120702686 G A GRIK4 Missense_Mutation p.A213T 0.30 tolerated(0.39) benign(0.137) TCGA-AA-A00N-01 11 120745855 120745855 T C GRIK4 Missense_Mutation p.L356S 0.21 deleterious(0.03) benign(0.081) TCGA-AA-A00N-01 11 120980006 120980006 C T TECTA Silent p.F95F 0.26 TCGA-AA-A00N-01 11 120998648 120998648 C T TECTA Silent p.F654F 0.24 TCGA-AA-A00N-01 11 121037437 121037437 T C TECTA Missense_Mutation p.F1845S 0.13 tolerated(0.13) probably_damaging(0.995) TCGA-AA-A00N-01 11 122724707 122724707 G T CRTAM Nonsense_Mutation p.E135* 0.21 TCGA-AA-A00N-01 11 122733124 122733124 T C CRTAM Intron 0.22 TCGA-AA-A00N-01 11 122928987 122928987 T G HSPA8 Missense_Mutation p.E576D 0.24 tolerated_low_confidence(0.16) probably_damaging(0.997) TCGA-AA-A00N-01 11 12316188 12316188 G T MICALCL Missense_Mutation p.D404Y 0.15 deleterious(0) probably_damaging(0.982) TCGA-AA-A00N-01 11 123477453 123477453 A G GRAMD1B Missense_Mutation p.D344G 0.24 tolerated(0.07) probably_damaging(0.998) TCGA-AA-A00N-01 11 123480559 123480559 C A GRAMD1B Missense_Mutation p.L429I 0.07 tolerated(0.17) benign(0.338) TCGA-AA-A00N-01 11 123624366 123624366 A C OR6X1 Missense_Mutation p.I287M 0.27 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 11 123813682 123813682 G A OR6T1 Silent p.F288F 0.21 TCGA-AA-A00N-01 11 123814297 123814297 G A OR6T1 Silent p.V83V 0.15 TCGA-AA-A00N-01 11 123847796 123847796 G A OR10S1 Silent p.L201L 0.15 TCGA-AA-A00N-01 11 123886941 123886941 C T OR10G4 Silent p.I220I 0.04 TCGA-AA-A00N-01 11 123909611 123909611 T C OR10G7 Missense_Mutation p.Y33C 0.06 deleterious(0) probably_damaging(0.966) TCGA-AA-A00N-01 11 124742358 124742358 G A ROBO3 Missense_Mutation p.V414M 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 124829044 124829044 G A CCDC15 Missense_Mutation p.E71K 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 11 124857226 124857226 G A CCDC15 Silent p.Q368Q 0.16 TCGA-AA-A00N-01 11 124956278 124956278 G T SLC37A2 Intron 0.19 TCGA-AA-A00N-01 11 125318413 125318413 C T FEZ1 Missense_Mutation p.D383N 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A00N-01 11 125330551 125330551 C A FEZ1 Missense_Mutation p.E170D 0.11 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 11 125853858 125853858 G A CDON Silent p.I968I 0.10 TCGA-AA-A00N-01 11 125864894 125864894 G A CDON Missense_Mutation p.R806W 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 11 125875776 125875776 G A CDON Missense_Mutation p.P577S 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 126276159 126276159 A G ST3GAL4 Intron 0.19 TCGA-AA-A00N-01 11 1262826 1262826 C T MUC5B Silent p.F1572F 0.17 TCGA-AA-A00N-01 11 128642753 128642753 C T FLI1 Silent p.I154I 0.36 TCGA-AA-A00N-01 11 128842602 128842602 C T ARHGAP32 Missense_Mutation p.E1253K 0.20 tolerated_low_confidence(0.15) possibly_damaging(0.54) TCGA-AA-A00N-01 11 13375965 13375965 G A ARNTL Missense_Mutation p.R37H 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 11 133795821 133795821 G C IGSF9B Missense_Mutation p.T616S 0.20 tolerated(0.45) benign(0.144) TCGA-AA-A00N-01 11 134014169 134014169 A G JAM3 Missense_Mutation p.K97R 0.24 tolerated(0.51) benign(0.02) TCGA-AA-A00N-01 11 134038946 134038946 G A NCAPD3 Silent p.F1035F 0.24 TCGA-AA-A00N-01 11 134151273 134151273 A G GLB1L3 Missense_Mutation p.Y122C 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 134252719 134252719 C T B3GAT1 Missense_Mutation p.R268Q 0.17 tolerated(0.26) benign(0.215) TCGA-AA-A00N-01 11 134253580 134253580 G A B3GAT1 Silent p.F205F 0.24 TCGA-AA-A00N-01 11 14282205 14282205 C T RP11-21L19.1 3'Flank 0.21 TCGA-AA-A00N-01 11 14284332 14284332 C T RP11-21L19.1 3'Flank 0.24 TCGA-AA-A00N-01 11 14899649 14899649 G A CYP2R1 3'UTR 0.18 TCGA-AA-A00N-01 11 14907379 14907379 C T CYP2R1 Missense_Mutation p.E104K 0.26 deleterious(0.01) possibly_damaging(0.748) TCGA-AA-A00N-01 11 1501712 1501712 C T MOB2 Silent p.T92T 0.21 TCGA-AA-A00N-01 11 15096672 15096672 C T CALCB Missense_Mutation p.A51V 0.04 tolerated(0.07) possibly_damaging(0.71) TCGA-AA-A00N-01 11 15247207 15247207 G T INSC Nonsense_Mutation p.E382* 0.30 TCGA-AA-A00N-01 11 1618876 1618876 G A KRTAP5-2 3'UTR 0.20 TCGA-AA-A00N-01 11 17098755 17098755 A C RPS13 Missense_Mutation p.I37M 0.24 deleterious(0.02) possibly_damaging(0.535) TCGA-AA-A00N-01 11 17757687 17757687 C T KCNC1 Silent p.F46F 0.19 TCGA-AA-A00N-01 11 18134762 18134762 G T SAA3P RNA 0.15 TCGA-AA-A00N-01 11 18232041 18232041 C A RP11-113D6.10 3'UTR 0.29 TCGA-AA-A00N-01 11 18253056 18253056 T G SAA4 Missense_Mutation p.K129T 0.20 deleterious(0) probably_damaging(0.913) TCGA-AA-A00N-01 11 18317567 18317567 G T HPS5 Missense_Mutation p.S538Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 11 18723211 18723211 G A TMEM86A Silent p.A126A 0.16 TCGA-AA-A00N-01 11 18955574 18955574 A G MRGPRX1 Missense_Mutation p.V253A 0.10 tolerated(0.17) benign(0.021) TCGA-AA-A00N-01 11 18956301 18956301 C A MRGPRX1 Nonsense_Mutation p.E11* 0.09 TCGA-AA-A00N-01 11 199435 199435 A G ODF3 Missense_Mutation p.T201A 0.18 deleterious(0.01) possibly_damaging(0.78) TCGA-AA-A00N-01 11 20180780 20180780 G A DBX1 Silent p.F142F 0.19 TCGA-AA-A00N-01 11 211311 211311 C T RIC8A Missense_Mutation p.R311C 0.17 tolerated(0.1) benign(0.005) TCGA-AA-A00N-01 11 22360003 22360003 G A SLC17A6 5'UTR 0.17 TCGA-AA-A00N-01 11 22696508 22696508 T G GAS2 Silent p.A31A 0.21 TCGA-AA-A00N-01 11 25100277 25100277 G T LUZP2 3'UTR 0.19 TCGA-AA-A00N-01 11 27017635 27017635 T G FIBIN 3'UTR 0.21 TCGA-AA-A00N-01 11 27371687 27371687 A C CCDC34 Intron 0.35 TCGA-AA-A00N-01 11 27371844 27371844 G T CCDC34 Intron 0.16 TCGA-AA-A00N-01 11 28119446 28119446 G A KIF18A Missense_Mutation p.R17C 0.14 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 293486 293486 C T ATHL1 Silent p.F488F 0.22 TCGA-AA-A00N-01 11 30033961 30033961 G A KCNA4 Missense_Mutation p.R89W 0.25 deleterious_low_confidence(0.02) benign(0.021) TCGA-AA-A00N-01 11 30930611 30930611 T G DCDC1 Missense_Mutation p.K1267T 0.23 tolerated(0.18) benign(0) TCGA-AA-A00N-01 11 30944126 30944126 C A DCDC1 Missense_Mutation p.K1019N 0.06 deleterious(0) benign(0.188) TCGA-AA-A00N-01 11 30953406 30953406 G A DCDC1 Nonsense_Mutation p.R937* 0.35 TCGA-AA-A00N-01 11 31349758 31349758 C T DCDC1 Missense_Mutation p.A24T 0.12 tolerated_low_confidence(0.31) benign(0.006) TCGA-AA-A00N-01 11 32118709 32118709 G A RCN1 Missense_Mutation p.D92N 0.14 deleterious(0.02) benign(0.165) TCGA-AA-A00N-01 11 32126409 32126409 T C RCN1 3'UTR 0.25 TCGA-AA-A00N-01 11 32126674 32126674 G T RCN1 3'UTR 0.19 TCGA-AA-A00N-01 11 32615462 32615462 A G EIF3M Missense_Mutation p.D195G 0.30 deleterious(0.01) possibly_damaging(0.542) TCGA-AA-A00N-01 11 32635617 32635617 A G CCDC73 Silent p.C749C 0.21 TCGA-AA-A00N-01 11 32720839 32720839 T G CCDC73 Missense_Mutation p.E116D 0.21 deleterious(0.03) probably_damaging(0.977) TCGA-AA-A00N-01 11 32720850 32720850 C T CCDC73 Missense_Mutation p.E113K 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 33054826 33054826 G T DEPDC7 Missense_Mutation p.R454I 0.27 deleterious(0) possibly_damaging(0.786) TCGA-AA-A00N-01 11 33127484 33127484 T C CSTF3 Intron 0.24 TCGA-AA-A00N-01 11 3381034 3381034 T C ZNF195 Missense_Mutation p.R402G 0.36 tolerated(0.2) possibly_damaging(0.902) TCGA-AA-A00N-01 11 34502361 34502361 T G ELF5 Missense_Mutation p.K220T 0.06 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A00N-01 11 35338925 35338925 A G SLC1A2 Silent p.F52F 0.57 TCGA-AA-A00N-01 11 35453964 35453964 G A PAMR1 Silent p.L718L 0.22 TCGA-AA-A00N-01 11 35454083 35454083 T C PAMR1 Missense_Mutation p.T679A 0.16 deleterious(0.01) benign(0.138) TCGA-AA-A00N-01 11 35473444 35473444 G T PAMR1 Nonsense_Mutation p.S288* 0.21 TCGA-AA-A00N-01 11 35642306 35642306 A C FJX1 3'UTR 0.23 TCGA-AA-A00N-01 11 36597544 36597544 G A RAG1 Missense_Mutation p.R897Q 0.28 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-AA-A00N-01 11 36599771 36599771 T C RAG1 3'UTR 0.21 TCGA-AA-A00N-01 11 3660244 3660244 A G ART5 Missense_Mutation p.V270A 0.23 tolerated(0.19) benign(0.007) TCGA-AA-A00N-01 11 44104857 44104857 G T ACCS Missense_Mutation p.R417I 0.17 deleterious(0) probably_damaging(0.938) TCGA-AA-A00N-01 11 4411571 4411571 G A TRIM21 Silent p.F23F 0.29 TCGA-AA-A00N-01 11 4471035 4471035 A G OR52K2 Missense_Mutation p.T156A 0.21 tolerated(0.33) benign(0.019) TCGA-AA-A00N-01 11 44928021 44928021 C A TSPAN18 Missense_Mutation p.F18L 0.15 tolerated(0.63) benign(0.177) TCGA-AA-A00N-01 11 460189 460189 G A PTDSS2 Missense_Mutation p.R62Q 0.16 tolerated(0.1) benign(0.033) TCGA-AA-A00N-01 11 46726595 46726595 C T ZNF408 Missense_Mutation p.R449W 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 11 46748311 46748311 G A F2 Missense_Mutation p.E352K 0.37 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 11 4675045 4675045 G T OR51E1 3'UTR 0.19 TCGA-AA-A00N-01 11 46829686 46829686 T G CKAP5 Missense_Mutation p.K291N 0.07 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 11 46832601 46832601 G A CKAP5 Missense_Mutation p.R196W 0.26 deleterious(0.02) probably_damaging(0.916) TCGA-AA-A00N-01 11 46912037 46912037 T G LRP4 Missense_Mutation p.Y569S 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 47353789 47353789 C A MYBPC3 Missense_Mutation p.K1216N 0.12 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 11 47372995 47372995 G A MYBPC3 Silent p.F29F 0.22 TCGA-AA-A00N-01 11 47599513 47599513 C A KBTBD4 Missense_Mutation p.E29D 0.27 tolerated(0.12) benign(0.006) TCGA-AA-A00N-01 11 47684584 47684584 T G AGBL2 Missense_Mutation p.R843S 0.08 tolerated_low_confidence(0.08) benign(0.017) TCGA-AA-A00N-01 11 4824838 4824838 G C OR52R1 Missense_Mutation p.A258G 0.11 tolerated(0.34) benign(0.209) TCGA-AA-A00N-01 11 4825182 4825182 G A OR52R1 Silent p.V143V 0.11 TCGA-AA-A00N-01 11 4825519 4825519 G A OR52R1 Missense_Mutation p.A31V 0.18 deleterious(0) possibly_damaging(0.78) TCGA-AA-A00N-01 11 48267343 48267343 T C OR4X2 Missense_Mutation p.S230P 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 48285489 48285489 C A OR4X1 Missense_Mutation p.S26Y 0.19 deleterious(0) benign(0.147) TCGA-AA-A00N-01 11 48286016 48286016 G A OR4X1 Missense_Mutation p.G202S 0.20 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 11 48328629 48328629 T C OR4S1 Silent p.Y285Y 0.20 TCGA-AA-A00N-01 11 4870073 4870073 G T OR51S1 Silent p.V122V 0.23 TCGA-AA-A00N-01 11 49175978 49175978 T G FOLH1 Missense_Mutation p.K564Q 0.23 tolerated(0.13) benign(0.001) TCGA-AA-A00N-01 11 49597782 49597782 G A RP11-707M1.1 RNA 0.27 TCGA-AA-A00N-01 11 49598156 49598156 C T RP11-707M1.1 RNA 0.14 TCGA-AA-A00N-01 11 49831384 49831384 A C RP11-707M1.1 RNA 0.24 TCGA-AA-A00N-01 11 49831417 49831417 T G RP11-707M1.1 RNA 0.18 TCGA-AA-A00N-01 11 5068207 5068207 T C OR52J3 Missense_Mutation p.V151A 0.25 deleterious(0.01) benign(0.026) TCGA-AA-A00N-01 11 51411948 51411948 C T OR4A5 Missense_Mutation p.G150S 0.19 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-AA-A00N-01 11 51515477 51515477 T G OR4C46 Missense_Mutation p.F66V 0.20 deleterious_low_confidence(0.02) benign(0.191) TCGA-AA-A00N-01 11 5172926 5172926 A C OR52A1 Missense_Mutation p.F225C 0.20 deleterious(0.01) benign(0.415) TCGA-AA-A00N-01 11 5173574 5173574 T C OR52A1 Missense_Mutation p.Y9C 0.17 deleterious(0.01) benign(0.003) TCGA-AA-A00N-01 11 5290772 5290772 A G HBE1 Missense_Mutation p.I76T 0.21 deleterious(0) benign(0.027) TCGA-AA-A00N-01 11 5345406 5345406 C T OR51B2 Missense_Mutation p.G41D 0.27 tolerated(0.18) possibly_damaging(0.563) TCGA-AA-A00N-01 11 5364513 5364513 C T OR51B5 Missense_Mutation p.G81E 0.17 deleterious(0.02) benign(0.114) TCGA-AA-A00N-01 11 5475049 5475049 G T OR51I2 Nonsense_Mutation p.E111* 0.15 TCGA-AA-A00N-01 11 5475196 5475196 C T OR51I2 Missense_Mutation p.P160S 0.20 deleterious(0.01) possibly_damaging(0.887) TCGA-AA-A00N-01 11 55029754 55029754 G T TRIM48 Missense_Mutation p.R4I 0.22 deleterious_low_confidence(0.01) benign(0.003) TCGA-AA-A00N-01 11 55065590 55065590 G A TRIM51HP RNA 0.26 TCGA-AA-A00N-01 11 55110701 55110701 G T OR4A16 Nonsense_Mutation p.E9* 0.34 TCGA-AA-A00N-01 11 55110744 55110744 A C OR4A16 Missense_Mutation p.K23T 0.12 deleterious_low_confidence(0.03) benign(0.103) TCGA-AA-A00N-01 11 55135807 55135807 C T OR4A15 Nonsense_Mutation p.R150* 0.25 TCGA-AA-A00N-01 11 55322259 55322259 C A OR4C15 Missense_Mutation p.F159L 0.16 tolerated_low_confidence(0.17) benign(0.033) TCGA-AA-A00N-01 11 55405975 55405975 A G OR4P4 Missense_Mutation p.T48A 0.23 tolerated(0.46) benign(0.003) TCGA-AA-A00N-01 11 55419140 55419140 T G OR4S2 Missense_Mutation p.F254C 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 55541762 55541762 G A OR5D13 Silent p.A283A 0.28 TCGA-AA-A00N-01 11 55563299 55563299 G T OR5D14 Missense_Mutation p.A90S 0.16 deleterious(0.02) benign(0.028) TCGA-AA-A00N-01 11 55653624 55653624 C T TRIM51 Missense_Mutation p.S146F 0.20 tolerated(0.57) benign(0.003) TCGA-AA-A00N-01 11 5565829 5565829 C T OR52H1 Missense_Mutation p.D309N 0.25 deleterious(0.04) benign(0.005) TCGA-AA-A00N-01 11 55703727 55703727 C T OR5I1 Silent p.L50L 0.20 TCGA-AA-A00N-01 11 55761349 55761349 G T OR5F1 Missense_Mutation p.F251L 0.33 tolerated(0.06) possibly_damaging(0.868) TCGA-AA-A00N-01 11 55761516 55761516 C A OR5F1 Nonsense_Mutation p.E196* 0.27 TCGA-AA-A00N-01 11 55761598 55761598 G T OR5F1 Missense_Mutation p.F168L 0.25 deleterious(0.03) benign(0.12) TCGA-AA-A00N-01 11 55761778 55761778 C T OR5F1 Silent p.A108A 0.20 TCGA-AA-A00N-01 11 55927114 55927114 T C OR8K5 Missense_Mutation p.Q227R 0.23 tolerated_low_confidence(1) benign(0.005) TCGA-AA-A00N-01 11 56043492 56043492 C A OR5T1 Silent p.L126L 0.26 TCGA-AA-A00N-01 11 56058019 56058019 G A OR8H1 Missense_Mutation p.R174C 0.26 deleterious(0.01) possibly_damaging(0.601) TCGA-AA-A00N-01 11 56058173 56058173 G A OR8H1 Silent p.Y122Y 0.24 TCGA-AA-A00N-01 11 56113768 56113768 C T OR8K1 Missense_Mutation p.P85L 0.06 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-AA-A00N-01 11 56185493 56185493 A G OR5R1 Silent p.C72C 0.20 TCGA-AA-A00N-01 11 56258205 56258205 A G OR5M8 Silent p.C214C 0.24 TCGA-AA-A00N-01 11 5626712 5626712 A G TRIM6 Missense_Mutation p.D250G 0.19 deleterious(0.01) benign(0.024) TCGA-AA-A00N-01 11 56409482 56409482 C A OR5AP2 Missense_Mutation p.R145I 0.21 deleterious(0.02) possibly_damaging(0.555) TCGA-AA-A00N-01 11 56431692 56431692 C A OR5AR1 Missense_Mutation p.F177L 0.32 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 11 56510657 56510657 C T OR9G4 Missense_Mutation p.E211K 0.17 deleterious(0.05) possibly_damaging(0.689) TCGA-AA-A00N-01 11 57263628 57263628 C T SLC43A1 Missense_Mutation p.D190N 0.25 deleterious(0.04) benign(0.44) TCGA-AA-A00N-01 11 5730798 5730798 C T TRIM22 Missense_Mutation p.R473C 0.24 tolerated(0.22) benign(0.006) TCGA-AA-A00N-01 11 57310828 57310828 C T SMTNL1 Missense_Mutation p.A256V 0.19 tolerated(0.33) benign(0) TCGA-AA-A00N-01 11 57367766 57367766 G A SERPING1 Missense_Mutation p.A156T 0.20 tolerated(0.2) benign(0.241) TCGA-AA-A00N-01 11 5758055 5758055 C T OR56B1 Silent p.L103L 0.20 TCGA-AA-A00N-01 11 5809116 5809116 G T OR52N1 Missense_Mutation p.L311I 0.18 tolerated(0.4) benign(0.003) TCGA-AA-A00N-01 11 58390307 58390307 C T CNTF Missense_Mutation p.R28C 0.18 deleterious(0) benign(0.003) TCGA-AA-A00N-01 11 5842375 5842375 T C OR52N2 Silent p.N270N 0.06 TCGA-AA-A00N-01 11 58477249 58477249 A G GLYAT Missense_Mutation p.V294A 0.27 deleterious(0.05) benign(0.16) TCGA-AA-A00N-01 11 58892779 58892779 G A FAM111B Silent p.P403P 0.20 TCGA-AA-A00N-01 11 59245249 59245249 C T OR4D10 Missense_Mutation p.S116L 0.19 tolerated(0.06) benign(0.009) TCGA-AA-A00N-01 11 59368297 59368297 C T OSBP Missense_Mutation p.E392K 0.26 tolerated(0.73) benign(0.276) TCGA-AA-A00N-01 11 5969259 5969259 C T OR56A3 Missense_Mutation p.A228V 0.25 tolerated(0.07) benign(0.181) TCGA-AA-A00N-01 11 6007675 6007675 G A OR52L1 Silent p.I162I 0.27 TCGA-AA-A00N-01 11 60234514 60234514 C T MS4A1 Missense_Mutation p.T219M 0.25 tolerated(0.57) benign(0.001) TCGA-AA-A00N-01 11 60235967 60235967 T - MS4A1 3'UTR 0.18 TCGA-AA-A00N-01 11 60265093 60265093 T G MS4A12 Intron 0.21 TCGA-AA-A00N-01 11 60561522 60561522 C A MS4A10 Silent p.L146L 0.06 TCGA-AA-A00N-01 11 60638480 60638480 G T ZP1 Nonsense_Mutation p.E293* 0.14 TCGA-AA-A00N-01 11 60640646 60640646 G A ZP1 Missense_Mutation p.R375H 0.18 tolerated(0.13) benign(0.14) TCGA-AA-A00N-01 11 60705453 60705453 C T SLC15A3 Missense_Mutation p.A494T 0.21 tolerated(0.06) possibly_damaging(0.811) TCGA-AA-A00N-01 11 60906282 60906282 T G VPS37C Missense_Mutation p.K7T 0.22 tolerated(0.05) probably_damaging(0.957) TCGA-AA-A00N-01 11 609451 609451 C T PHRF1 Missense_Mutation p.S1331L 0.15 tolerated(0.41) benign(0.008) TCGA-AA-A00N-01 11 61300530 61300530 G A SYT7 Silent p.S169S 0.08 TCGA-AA-A00N-01 11 61405187 61405187 A G RPLP0P2 RNA 0.29 TCGA-AA-A00N-01 11 61605285 61605285 C T FADS2 Silent p.F81F 0.29 TCGA-AA-A00N-01 11 61633248 61633248 C T FADS2 3'UTR 0.18 TCGA-AA-A00N-01 11 61897364 61897364 G A INCENP Missense_Mutation p.R122Q 0.20 tolerated(0.33) unknown(0) TCGA-AA-A00N-01 11 6191099 6191099 C T OR52B2 Missense_Mutation p.R153Q 0.17 deleterious(0.01) probably_damaging(0.915) TCGA-AA-A00N-01 11 62287213 62287213 G A AHNAK Silent p.F4892F 0.24 TCGA-AA-A00N-01 11 62294090 62294090 G T AHNAK Missense_Mutation p.S2600Y 0.18 possibly_damaging(0.891) TCGA-AA-A00N-01 11 62382187 62382187 T G ROM1 Missense_Mutation p.F311C 0.20 deleterious(0) possibly_damaging(0.781) TCGA-AA-A00N-01 11 6245135 6245135 G A FAM160A2 Missense_Mutation p.A161V 0.17 tolerated(0.21) benign(0.337) TCGA-AA-A00N-01 11 6245163 6245163 G A FAM160A2 Missense_Mutation p.R152C 0.19 deleterious(0) probably_damaging(0.917) TCGA-AA-A00N-01 11 6245408 6245408 C T FAM160A2 Missense_Mutation p.R70H 0.29 deleterious(0.04) benign(0.008) TCGA-AA-A00N-01 11 62556781 62556781 G A TMEM179B Missense_Mutation p.R101H 0.18 tolerated(0.09) possibly_damaging(0.847) TCGA-AA-A00N-01 11 62564038 62564038 A G NXF1 Missense_Mutation p.Y394H 0.18 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 11 62575096 62575096 C T STX5 Missense_Mutation p.D305N 0.20 deleterious(0.04) possibly_damaging(0.879) TCGA-AA-A00N-01 11 62603451 62603451 C A WDR74 Missense_Mutation p.K117N 0.19 tolerated(0.3) benign(0.001) TCGA-AA-A00N-01 11 6260633 6260633 G A CNGA4 Missense_Mutation p.D28N 0.23 tolerated(0.09) probably_damaging(0.999) TCGA-AA-A00N-01 11 6281307 6281307 G A CCKBR Missense_Mutation p.R50Q 0.27 tolerated(0.19) benign(0.002) TCGA-AA-A00N-01 11 62863494 62863494 G A SLC22A24 Nonsense_Mutation p.R347* 0.21 TCGA-AA-A00N-01 11 6291426 6291426 C T CCKBR Missense_Mutation p.A171V 0.26 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 11 6291430 6291430 T G CCKBR Silent p.A172A 0.18 TCGA-AA-A00N-01 11 62931431 62931431 G T SLC22A25 Silent p.V503V 0.19 TCGA-AA-A00N-01 11 6340499 6340499 G A PRKCDBP Missense_Mutation p.A227V 0.15 tolerated_low_confidence(0.13) benign(0.068) TCGA-AA-A00N-01 11 63978085 63978085 C T FERMT3 Missense_Mutation p.R55C 0.14 deleterious(0.03) benign(0.142) TCGA-AA-A00N-01 11 64067901 64067901 A G TEX40 Missense_Mutation p.K7E 0.16 deleterious(0.02) possibly_damaging(0.908) TCGA-AA-A00N-01 11 6413406 6413406 A G SMPD1 Intron 0.20 TCGA-AA-A00N-01 11 6415153 6415153 C T SMPD1 Silent p.F456F 0.09 TCGA-AA-A00N-01 11 6415662 6415662 T G SMPD1 Missense_Mutation p.F574C 0.28 tolerated(0.16) possibly_damaging(0.879) TCGA-AA-A00N-01 11 6424729 6424729 C A APBB1 Nonsense_Mutation p.E315* 0.35 TCGA-AA-A00N-01 11 64360259 64360259 C T SLC22A12 Silent p.L137L 0.23 TCGA-AA-A00N-01 11 64434761 64434761 C T NRXN2 Missense_Mutation p.E587K 0.20 deleterious(0.04) benign(0.003) TCGA-AA-A00N-01 11 6458685 6458685 G A HPX Missense_Mutation p.P230S 0.11 tolerated(0.98) benign(0.006) TCGA-AA-A00N-01 11 64599085 64599085 G A CDC42BPG Missense_Mutation p.R1066W 0.26 deleterious(0) probably_damaging(0.965) TCGA-AA-A00N-01 11 64824939 64824939 G A NAALADL1 Silent p.G169G 0.10 TCGA-AA-A00N-01 11 65373475 65373475 G A MAP3K11 Nonsense_Mutation p.R561* 0.17 TCGA-AA-A00N-01 11 65387889 65387889 T G PCNXL3 Silent p.A696A 0.25 TCGA-AA-A00N-01 11 65418133 65418133 C T SIPA1 Missense_Mutation p.R1026C 0.21 deleterious(0) probably_damaging(0.964) TCGA-AA-A00N-01 11 6549787 6549787 C A DNHD1 Missense_Mutation p.L625M 0.27 benign(0.073) TCGA-AA-A00N-01 11 65562735 65562735 C T OVOL1 Missense_Mutation p.R243C 0.18 deleterious(0) benign(0.005) TCGA-AA-A00N-01 11 65829168 65829168 C T SF3B2 Silent p.F597F 0.26 TCGA-AA-A00N-01 11 65829412 65829412 A G SF3B2 Silent p.G640G 0.23 TCGA-AA-A00N-01 11 6585876 6585876 C T DNHD1 Missense_Mutation p.S3533L 0.37 probably_damaging(0.998) TCGA-AA-A00N-01 11 66190229 66190229 G A NPAS4 Missense_Mutation p.R172Q 0.27 deleterious(0.01) probably_damaging(0.951) TCGA-AA-A00N-01 11 66190620 66190620 G A NPAS4 Missense_Mutation p.R242H 0.12 tolerated(0.17) benign(0.005) TCGA-AA-A00N-01 11 66298379 66298379 C T BBS1 Silent p.G496G 0.20 TCGA-AA-A00N-01 11 6640005 6640005 A G TPP1 Splice_Site p.X77_splice 0.14 TCGA-AA-A00N-01 11 66453904 66453904 C T SPTBN2 Missense_Mutation p.D2302N 0.07 tolerated(0.75) probably_damaging(0.997) TCGA-AA-A00N-01 11 66625861 66625861 C T LRFN4 Missense_Mutation p.R216C 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 11 67052969 67052969 T G ADRBK1 3'UTR 0.22 TCGA-AA-A00N-01 11 67075398 67075398 C A SSH3 Silent p.V291V 0.23 TCGA-AA-A00N-01 11 67191704 67191704 C T CARNS1 Missense_Mutation p.L829F 0.19 deleterious(0.01) possibly_damaging(0.562) TCGA-AA-A00N-01 11 67289426 67289426 C T CABP2 Missense_Mutation p.E81K 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-AA-A00N-01 11 68305355 68305355 T C PPP6R3 Missense_Mutation p.Y75H 0.23 deleterious(0) probably_damaging(0.987) TCGA-AA-A00N-01 11 68338535 68338535 C T PPP6R3 Nonsense_Mutation p.R436* 0.14 TCGA-AA-A00N-01 11 68509809 68509809 T G MTL5 Missense_Mutation p.K269Q 0.24 deleterious(0.04) possibly_damaging(0.776) TCGA-AA-A00N-01 11 6912920 6912920 G A OR2D2 Missense_Mutation p.S271L 0.18 tolerated(1) benign(0) TCGA-AA-A00N-01 11 6913726 6913726 T C OR2D2 Silent p.R2R 0.14 TCGA-AA-A00N-01 11 6942550 6942550 A G OR2D3 Silent p.K106K 0.17 TCGA-AA-A00N-01 11 6953446 6953446 G T ZNF215 5'UTR 0.09 TCGA-AA-A00N-01 11 6977033 6977033 G A ZNF215 Silent p.R275R 0.28 TCGA-AA-A00N-01 11 69951870 69951870 C T ANO1 Silent p.F241F 0.17 TCGA-AA-A00N-01 11 70260674 70260674 G A CTTN Silent p.S106S 0.20 TCGA-AA-A00N-01 11 7059844 7059844 C A NLRP14 Missense_Mutation p.F9L 0.19 tolerated(0.41) benign(0.01) TCGA-AA-A00N-01 11 70824353 70824353 T C SHANK2 Missense_Mutation p.K157E 0.14 deleterious(0) probably_damaging(0.978) TCGA-AA-A00N-01 11 71260302 71260302 A G KRTAP5-9 3'UTR 0.06 TCGA-AA-A00N-01 11 71293354 71293354 G T KRTAP5-11 3'UTR 0.23 TCGA-AA-A00N-01 11 73066619 73066619 C T ARHGEF17 Silent p.I1165I 0.18 TCGA-AA-A00N-01 11 73105282 73105282 G T RELT Missense_Mutation p.E236D 0.17 tolerated(0.05) possibly_damaging(0.708) TCGA-AA-A00N-01 11 73105540 73105540 G A RELT Silent p.P269P 0.38 TCGA-AA-A00N-01 11 73598466 73598466 A C PAAF1 Silent p.T52T 0.17 TCGA-AA-A00N-01 11 73638499 73638499 C T PAAF1 3'UTR 0.18 TCGA-AA-A00N-01 11 73670675 73670675 C A DNAJB13 Missense_Mutation p.F103L 0.25 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 11 74054398 74054398 C A PGM2L1 Nonsense_Mutation p.E428* 0.12 TCGA-AA-A00N-01 11 74563071 74563071 G A XRRA1 Silent p.F401F 0.20 TCGA-AA-A00N-01 11 75280097 75280097 G A SERPINH1 Missense_Mutation p.E279K 0.28 tolerated(0.13) benign(0.37) TCGA-AA-A00N-01 11 75316964 75316964 G A MAP6 Missense_Mutation p.A402V 0.05 tolerated(1) benign(0.001) TCGA-AA-A00N-01 11 75719880 75719880 T C UVRAG Silent p.G343G 0.19 TCGA-AA-A00N-01 11 75907760 75907760 G A WNT11 Missense_Mutation p.A29V 0.27 tolerated(0.12) benign(0.009) TCGA-AA-A00N-01 11 76158035 76158035 G T C11orf30 Missense_Mutation p.R18I 0.19 deleterious_low_confidence(0) benign(0.311) TCGA-AA-A00N-01 11 76257124 76257124 C A C11orf30 Nonsense_Mutation p.S1186* 0.23 TCGA-AA-A00N-01 11 76814220 76814220 C T OMP Missense_Mutation p.S112L 0.19 deleterious_low_confidence(0.03) benign(0.356) TCGA-AA-A00N-01 11 76825400 76825400 G A CAPN5 Missense_Mutation p.D207N 0.24 tolerated(0.27) benign(0.341) TCGA-AA-A00N-01 11 76892529 76892529 G A MYO7A Missense_Mutation p.R933H 0.23 tolerated(0.11) possibly_damaging(0.895) TCGA-AA-A00N-01 11 76918340 76918340 G A MYO7A Missense_Mutation p.E1917K 0.28 deleterious(0.03) benign(0.232) TCGA-AA-A00N-01 11 76918385 76918385 G A MYO7A Missense_Mutation p.A1932T 0.10 tolerated(0.12) benign(0.028) TCGA-AA-A00N-01 11 76940202 76940202 A C GDPD4 Missense_Mutation p.F489V 0.26 deleterious(0) benign(0.249) TCGA-AA-A00N-01 11 76982358 76982358 T C GDPD4 Silent p.V96V 0.24 TCGA-AA-A00N-01 11 7716874 7716874 G A OVCH2 Silent p.F403F 0.22 TCGA-AA-A00N-01 11 77885523 77885523 G A KCTD21 Silent p.D26D 0.21 TCGA-AA-A00N-01 11 78147847 78147847 G A NARS2 Missense_Mutation p.R435C 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 78368924 78368924 G A TENM4 3'UTR 0.31 TCGA-AA-A00N-01 11 78381417 78381417 G A TENM4 Silent p.D1991D 0.27 TCGA-AA-A00N-01 11 788076 788076 C A CEND1 3'UTR 0.21 TCGA-AA-A00N-01 11 7949500 7949500 G A OR10A6 Missense_Mutation p.A237V 0.29 deleterious(0.01) possibly_damaging(0.802) TCGA-AA-A00N-01 11 7950149 7950149 G A OR10A6 Missense_Mutation p.P21S 0.25 tolerated(0.07) benign(0.082) TCGA-AA-A00N-01 11 7960682 7960682 G T OR10A3 Missense_Mutation p.P129H 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 7960790 7960790 G T OR10A3 Missense_Mutation p.S93Y 0.17 deleterious(0) possibly_damaging(0.495) TCGA-AA-A00N-01 11 8118898 8118898 C T TUB Missense_Mutation p.R326W 0.19 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 11 8190509 8190509 C T RIC3 Missense_Mutation p.A10T 0.24 tolerated(0.73) possibly_damaging(0.638) TCGA-AA-A00N-01 11 82625802 82625802 C A C11orf82 Missense_Mutation p.L8I 0.12 deleterious(0.04) probably_damaging(0.936) TCGA-AA-A00N-01 11 82896001 82896001 A C PCF11 3'UTR 0.42 TCGA-AA-A00N-01 11 83544806 83544806 G A DLG2 Missense_Mutation p.R525C 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 11 83691622 83691622 T A DLG2 Missense_Mutation p.Y328F 0.17 tolerated(0.26) probably_damaging(0.995) TCGA-AA-A00N-01 11 84028207 84028207 C A DLG2 Intron 0.23 TCGA-AA-A00N-01 11 85437421 85437421 T C SYTL2 Missense_Mutation p.N27D 0.24 tolerated_low_confidence(0.07) benign(0.039) TCGA-AA-A00N-01 11 86048463 86048463 G A C11orf73 Missense_Mutation p.R104Q 0.06 tolerated(0.92) benign(0.003) TCGA-AA-A00N-01 11 8640438 8640438 C A TRIM66 Missense_Mutation p.E1179D 0.21 tolerated(1) benign(0) TCGA-AA-A00N-01 11 86519563 86519563 G A PRSS23 Missense_Mutation p.R293H 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 11 86521455 86521455 A G PRSS23 3'UTR 0.37 TCGA-AA-A00N-01 11 88045716 88045716 C A CTSC Nonsense_Mutation p.E109* 0.12 TCGA-AA-A00N-01 11 88780668 88780668 C T GRM5 Missense_Mutation p.G125S 0.18 tolerated(0.2) benign(0.068) TCGA-AA-A00N-01 11 89070625 89070625 T A NOX4 Missense_Mutation p.D502V 0.21 deleterious(0) probably_damaging(0.945) TCGA-AA-A00N-01 11 89409306 89409306 G A FOLH1B RNA 0.23 TCGA-AA-A00N-01 11 89431701 89431701 G T FOLH1B RNA 0.20 TCGA-AA-A00N-01 11 89867931 89867931 C T NAALAD2 Missense_Mutation p.A2V 0.21 deleterious_low_confidence(0.01) benign(0.047) TCGA-AA-A00N-01 11 89944398 89944398 C A CHORDC1 Nonsense_Mutation p.E140* 0.20 TCGA-AA-A00N-01 11 9047346 9047346 G A SCUBE2 Silent p.I862I 0.21 TCGA-AA-A00N-01 11 9048978 9048978 G A SCUBE2 Silent p.I821I 0.16 TCGA-AA-A00N-01 11 9051501 9051502 - T SCUBE2 Frame_Shift_Ins p.N754Kfs*2 0.18 TCGA-AA-A00N-01 11 92086795 92086795 A G FAT3 Missense_Mutation p.Y506C 0.12 probably_damaging(0.997) TCGA-AA-A00N-01 11 92087419 92087419 A G FAT3 Missense_Mutation p.D714G 0.26 probably_damaging(0.985) TCGA-AA-A00N-01 11 92087597 92087597 C A FAT3 Nonsense_Mutation p.C773* 0.22 TCGA-AA-A00N-01 11 92523301 92523301 C T FAT3 Missense_Mutation p.R1510W 0.14 probably_damaging(0.999) TCGA-AA-A00N-01 11 92534102 92534102 C T FAT3 Silent p.S2641S 0.14 TCGA-AA-A00N-01 11 92577198 92577198 A G FAT3 Silent p.E3555E 0.20 TCGA-AA-A00N-01 11 92577308 92577308 A G FAT3 Missense_Mutation p.Q3592R 0.28 probably_damaging(0.917) TCGA-AA-A00N-01 11 92592471 92592471 C T FAT3 Missense_Mutation p.P3881S 0.28 probably_damaging(0.969) TCGA-AA-A00N-01 11 92600122 92600122 C T FAT3 Silent p.F3958F 0.26 TCGA-AA-A00N-01 11 92714843 92714843 T C MTNR1B Missense_Mutation p.Y152H 0.18 deleterious(0) probably_damaging(0.951) TCGA-AA-A00N-01 11 92715356 92715356 C A MTNR1B Missense_Mutation p.L323I 0.21 tolerated(0.56) benign(0.003) TCGA-AA-A00N-01 11 92887297 92887297 C A SLC36A4 Missense_Mutation p.R395I 0.09 deleterious(0) probably_damaging(0.987) TCGA-AA-A00N-01 11 93421032 93421032 G A KIAA1731 Splice_Site p.X446_splice 0.10 TCGA-AA-A00N-01 11 93454710 93454710 T C KIAA1731 Intron 0.22 TCGA-AA-A00N-01 11 93471365 93471365 C A TAF1D Missense_Mutation p.K123N 0.17 deleterious(0.03) possibly_damaging(0.888) TCGA-AA-A00N-01 11 93778875 93778875 G A HEPHL1 Silent p.R69R 0.15 TCGA-AA-A00N-01 11 94040443 94040443 G A FOLR4 Missense_Mutation p.R147H 0.25 tolerated(1) benign(0) TCGA-AA-A00N-01 11 94178994 94178994 T G MRE11A Missense_Mutation p.N617H 0.24 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-AA-A00N-01 11 94219175 94219175 C T MRE11A Missense_Mutation p.E77K 0.19 tolerated(0.37) benign(0.026) TCGA-AA-A00N-01 11 94224001 94224001 C T MRE11A Missense_Mutation p.E51K 0.24 tolerated(0.26) benign(0.006) TCGA-AA-A00N-01 11 94282928 94282928 A C FUT4 3'UTR 0.08 TCGA-AA-A00N-01 11 94316657 94316657 A C PIWIL4 Missense_Mutation p.K186T 0.21 tolerated(0.06) benign(0.005) TCGA-AA-A00N-01 11 94335001 94335001 G A PIWIL4 Missense_Mutation p.R474Q 0.21 deleterious(0.01) benign(0.133) TCGA-AA-A00N-01 11 9450680 9450680 G T IPO7 Nonsense_Mutation p.E510* 0.18 TCGA-AA-A00N-01 11 94564662 94564662 G A AMOTL1 Missense_Mutation p.E535K 0.19 deleterious(0.01) benign(0.033) TCGA-AA-A00N-01 11 94587105 94587105 A G AMOTL1 Missense_Mutation p.E601G 0.10 deleterious(0) possibly_damaging(0.51) TCGA-AA-A00N-01 11 94592792 94592792 G A AMOTL1 Missense_Mutation p.D683N 0.24 deleterious(0) probably_damaging(0.925) TCGA-AA-A00N-01 11 94759416 94759416 C A KDM4E Missense_Mutation p.S232Y 0.38 tolerated(0.08) possibly_damaging(0.744) TCGA-AA-A00N-01 11 94917629 94917629 G T SESN3 Missense_Mutation p.L298I 0.15 tolerated(0.18) benign(0.198) TCGA-AA-A00N-01 11 94918638 94918638 C A SESN3 Nonsense_Mutation p.E182* 0.33 TCGA-AA-A00N-01 11 95532501 95532501 C T CEP57 Nonsense_Mutation p.R51* 0.21 TCGA-AA-A00N-01 11 95568591 95568591 C A MTMR2 Nonsense_Mutation p.E599* 0.22 TCGA-AA-A00N-01 11 95826662 95826662 C A MAML2 Missense_Mutation p.R178I 0.22 possibly_damaging(0.731) TCGA-AA-A00N-01 11 99690344 99690344 C A CNTN5 Missense_Mutation p.S42Y 0.10 deleterious_low_confidence(0) benign(0.259) TCGA-AA-A00N-01 12 100594709 100594709 C T ACTR6 Intron 0.20 TCGA-AA-A00N-01 12 1009816 1009816 G A WNK1 Missense_Mutation p.S2208N 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-AA-A00N-01 12 101738495 101738495 G T UTP20 Missense_Mutation p.E1524D 0.19 tolerated(0.51) benign(0.008) TCGA-AA-A00N-01 12 101750779 101750779 G A UTP20 Silent p.A1870A 0.26 TCGA-AA-A00N-01 12 101755756 101755756 T G UTP20 Missense_Mutation p.F1903C 0.06 deleterious(0) probably_damaging(0.945) TCGA-AA-A00N-01 12 101769435 101769435 C T UTP20 Missense_Mutation p.R2433C 0.20 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 12 101777044 101777044 C T UTP20 Missense_Mutation p.R2628W 0.29 deleterious(0.03) benign(0.002) TCGA-AA-A00N-01 12 101880435 101880435 C A SPIC Silent p.I211I 0.29 TCGA-AA-A00N-01 12 102155046 102155046 A C GNPTAB Missense_Mutation p.F998L 0.27 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 12 102542169 102542169 A C PARPBP Missense_Mutation p.L105F 0.24 deleterious(0.02) probably_damaging(0.947) TCGA-AA-A00N-01 12 102590724 102590724 G T PARPBP 3'Flank 0.22 TCGA-AA-A00N-01 12 103696194 103696194 C T C12orf42 Missense_Mutation p.D259N 0.21 tolerated(0.25) unknown(0) TCGA-AA-A00N-01 12 104192426 104192426 A G NT5DC3 Missense_Mutation p.V185A 0.22 deleterious(0) probably_damaging(0.983) TCGA-AA-A00N-01 12 104380749 104380749 G A TDG Missense_Mutation p.E372K 0.26 tolerated_low_confidence(0.1) benign(0.034) TCGA-AA-A00N-01 12 104497010 104497010 C T HCFC2 Missense_Mutation p.R780W 0.08 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 12 104682800 104682800 C T TXNRD1 Silent p.G132G 0.17 TCGA-AA-A00N-01 12 104713330 104713330 G A TXNRD1 Missense_Mutation p.G319D 0.21 tolerated(0.91) benign(0.071) TCGA-AA-A00N-01 12 105151550 105151550 A G CHST11 Missense_Mutation p.Y343C 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 10539562 10539562 A C KLRK1 Missense_Mutation p.F30V 0.19 tolerated(0.5) benign(0.017) TCGA-AA-A00N-01 12 10560298 10560298 C A KLRC4 Missense_Mutation p.R144I 0.20 deleterious(0) benign(0.023) TCGA-AA-A00N-01 12 10601878 10601878 C T KLRC1 Silent p.S149S 0.21 TCGA-AA-A00N-01 12 106464596 106464596 C T NUAK1 Missense_Mutation p.R263Q 0.21 tolerated(0.24) probably_damaging(0.999) TCGA-AA-A00N-01 12 107078653 107078653 C T RFX4 Intron 0.17 TCGA-AA-A00N-01 12 107398914 107398914 C A CRY1 Missense_Mutation p.R127I 0.09 deleterious(0.03) possibly_damaging(0.76) TCGA-AA-A00N-01 12 10758775 10758775 T G MAGOHB 3'UTR 0.26 TCGA-AA-A00N-01 12 107712821 107712821 C A BTBD11 Missense_Mutation p.S35Y 0.19 deleterious(0) unknown(0) TCGA-AA-A00N-01 12 108961001 108961001 C T ISCU Silent p.I125I 0.25 TCGA-AA-A00N-01 12 10959316 10959316 G T TAS2R8 Missense_Mutation p.F88L 0.16 tolerated(0.26) benign(0.381) TCGA-AA-A00N-01 12 10962438 10962438 G A TAS2R9 Silent p.S79S 0.25 TCGA-AA-A00N-01 12 109661688 109661688 C T ACACB Silent p.V1287V 0.08 TCGA-AA-A00N-01 12 109849786 109849786 G A MYO1H Missense_Mutation p.E484K 0.29 tolerated(0.06) benign(0.019) TCGA-AA-A00N-01 12 109895809 109895809 C T KCTD10 Silent p.A154A 0.21 TCGA-AA-A00N-01 12 109898554 109898554 G A KCTD10 Nonsense_Mutation p.R92* 0.28 TCGA-AA-A00N-01 12 110240815 110240815 G T TRPV4 Missense_Mutation p.F231L 0.26 deleterious(0.02) possibly_damaging(0.867) TCGA-AA-A00N-01 12 110252375 110252375 C T TRPV4 Missense_Mutation p.R76H 0.10 deleterious(0.01) possibly_damaging(0.617) TCGA-AA-A00N-01 12 110385284 110385284 G A GIT2 Missense_Mutation p.S473L 0.32 tolerated(0.22) benign(0.003) TCGA-AA-A00N-01 12 110734428 110734428 G A ATP2A2 Missense_Mutation p.E117K 0.30 deleterious(0.03) possibly_damaging(0.798) TCGA-AA-A00N-01 12 110778557 110778557 C T ATP2A2 Missense_Mutation p.R619W 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 11082879 11082879 G T PRH2 Nonsense_Mutation p.E26* 0.07 TCGA-AA-A00N-01 12 110872879 110872879 G A ARPC3 3'UTR 0.16 TCGA-AA-A00N-01 12 110910898 110910898 T G FAM216A Silent p.S53S 0.22 TCGA-AA-A00N-01 12 110910925 110910925 T C FAM216A Splice_Site p.X62_splice 0.21 TCGA-AA-A00N-01 12 11091630 11091630 A C TAS2R14 Silent p.V59V 0.26 TCGA-AA-A00N-01 12 111168404 111168404 C A PPP1CC Missense_Mutation p.E116D 0.27 tolerated_low_confidence(0.17) benign(0.018) TCGA-AA-A00N-01 12 11138638 11138638 G A TAS2R50 Silent p.F274F 0.19 TCGA-AA-A00N-01 12 11138717 11138717 G A TAS2R50 Missense_Mutation p.S248L 0.21 tolerated(0.09) benign(0.243) TCGA-AA-A00N-01 12 111471969 111471969 G A CUX2 5'UTR 0.20 TCGA-AA-A00N-01 12 111652084 111652084 C T CUX2 Silent p.L48L 0.24 TCGA-AA-A00N-01 12 111736357 111736357 C T CUX2 Silent p.V239V 0.16 TCGA-AA-A00N-01 12 111885573 111885573 C T SH2B3 Silent p.C450C 0.19 TCGA-AA-A00N-01 12 112371793 112371793 C A TMEM116 Silent p.V210V 0.17 TCGA-AA-A00N-01 12 112600942 112600942 G A HECTD4 Missense_Mutation p.R4196C 0.17 probably_damaging(0.997) TCGA-AA-A00N-01 12 112601034 112601034 G A HECTD4 Missense_Mutation p.T4165M 0.31 probably_damaging(0.995) TCGA-AA-A00N-01 12 112843793 112843793 A C RPL6 Missense_Mutation p.F193C 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-AA-A00N-01 12 113316953 113316953 C T RPH3A Missense_Mutation p.L401F 0.29 deleterious(0.03) benign(0.038) TCGA-AA-A00N-01 12 113398967 113398967 C T OAS3 Silent p.F583F 0.31 TCGA-AA-A00N-01 12 113645524 113645524 C T IQCD Missense_Mutation p.D150N 0.06 tolerated(0.18) possibly_damaging(0.447) TCGA-AA-A00N-01 12 1137581 1137581 A G ERC1 Missense_Mutation p.D171G 0.17 deleterious(0) possibly_damaging(0.566) TCGA-AA-A00N-01 12 113906985 113906985 G A LHX5 Silent p.F113F 0.21 TCGA-AA-A00N-01 12 114397065 114397065 C T RBM19 Missense_Mutation p.D175N 0.30 deleterious(0) benign(0.426) TCGA-AA-A00N-01 12 11462340 11462340 C A PRB4 Splice_Site p.X22_splice 0.17 TCGA-AA-A00N-01 12 116446527 116446527 C T MED13L Missense_Mutation p.R564Q 0.20 tolerated(0.38) unknown(0) TCGA-AA-A00N-01 12 117749304 117749304 G A NOS1 Silent p.V273V 0.12 TCGA-AA-A00N-01 12 118637026 118637026 C A TAOK3 Missense_Mutation p.D342Y 0.17 deleterious(0) possibly_damaging(0.594) TCGA-AA-A00N-01 12 120172009 120172009 G A CIT Nonsense_Mutation p.R1104* 0.25 TCGA-AA-A00N-01 12 120222001 120222001 C A CIT Intron 0.25 TCGA-AA-A00N-01 12 120572358 120572358 G A GCN1L1 Missense_Mutation p.A2394V 0.27 benign(0) TCGA-AA-A00N-01 12 120602249 120602249 A G GCN1L1 Missense_Mutation p.V580A 0.13 probably_damaging(0.996) TCGA-AA-A00N-01 12 120602455 120602455 T G GCN1L1 Missense_Mutation p.K561N 0.24 benign(0.009) TCGA-AA-A00N-01 12 120652759 120652759 C T PXN Missense_Mutation p.V397I 0.09 tolerated(0.07) possibly_damaging(0.799) TCGA-AA-A00N-01 12 120750308 120750308 G T SIRT4 Nonsense_Mutation p.E183* 0.13 TCGA-AA-A00N-01 12 120765537 120765537 G A PLA2G1B Missense_Mutation p.A7V 0.27 tolerated(0.44) benign(0.02) TCGA-AA-A00N-01 12 121017331 121017331 T G POP5 Missense_Mutation p.N128T 0.20 tolerated(0.1) benign(0.293) TCGA-AA-A00N-01 12 121017397 121017397 G A POP5 Missense_Mutation p.T106I 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 121204164 121204164 C T SPPL3 Missense_Mutation p.A329T 0.33 deleterious(0.02) benign(0.429) TCGA-AA-A00N-01 12 121205248 121205248 G A SPPL3 Missense_Mutation p.R308C 0.20 deleterious(0.01) probably_damaging(0.915) TCGA-AA-A00N-01 12 121768558 121768558 G T ANAPC5 Intron 0.13 TCGA-AA-A00N-01 12 122437815 122437815 G A WDR66 Missense_Mutation p.R1067Q 0.21 tolerated(0.37) benign(0.001) TCGA-AA-A00N-01 12 122691185 122691185 T C B3GNT4 Silent p.G129G 0.13 TCGA-AA-A00N-01 12 122803882 122803882 G A CLIP1 Missense_Mutation p.A1088V 0.21 tolerated(0.11) probably_damaging(0.987) TCGA-AA-A00N-01 12 122862024 122862024 T G CLIP1 Missense_Mutation p.K190T 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-AA-A00N-01 12 122966505 122966505 G A ZCCHC8 Missense_Mutation p.P288S 0.07 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 122990036 122990036 A G RSRC2 3'UTR 0.07 TCGA-AA-A00N-01 12 123075271 123075271 G A KNTC1 Missense_Mutation p.D1373N 0.20 tolerated(0.39) benign(0.018) TCGA-AA-A00N-01 12 12317235 12317235 C T LRP6 Missense_Mutation p.R675Q 0.29 deleterious(0.01) possibly_damaging(0.872) TCGA-AA-A00N-01 12 123706424 123706424 T G MPHOSPH9 5'UTR 0.19 TCGA-AA-A00N-01 12 12397338 12397338 C A LRP6 Missense_Mutation p.D103Y 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 124180988 124180988 G A TCTN2 Missense_Mutation p.A447T 0.04 deleterious(0.02) benign(0.314) TCGA-AA-A00N-01 12 124274522 124274522 A G DNAH10 Missense_Mutation p.T496A 0.16 possibly_damaging(0.902) TCGA-AA-A00N-01 12 124366225 124366225 C T DNAH10 Silent p.F2778F 0.06 TCGA-AA-A00N-01 12 124387526 124387526 G T DNAH10 Missense_Mutation p.E3109D 0.19 benign(0.169) TCGA-AA-A00N-01 12 124413888 124413888 G A DNAH10 Missense_Mutation p.E4007K 0.26 benign(0.149) TCGA-AA-A00N-01 12 124421929 124421929 G A CCDC92 Silent p.F224F 0.28 TCGA-AA-A00N-01 12 124422260 124422260 G A CCDC92 Missense_Mutation p.A114V 0.08 tolerated(0.05) probably_damaging(0.999) TCGA-AA-A00N-01 12 124499558 124499558 T G ZNF664 3'UTR 0.23 TCGA-AA-A00N-01 12 126128671 126128671 G A TMEM132B Missense_Mutation p.S491N 0.23 deleterious(0) possibly_damaging(0.705) TCGA-AA-A00N-01 12 12874121 12874121 A C CDKN1B 3'UTR 0.25 TCGA-AA-A00N-01 12 129558692 129558692 T G TMEM132D Missense_Mutation p.K1010Q 0.18 tolerated(0.19) benign(0.004) TCGA-AA-A00N-01 12 129558977 129558977 C T TMEM132D Missense_Mutation p.D915N 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 12978974 12978974 G A DDX47 Missense_Mutation p.R359H 0.13 deleterious(0) benign(0.268) TCGA-AA-A00N-01 12 130898681 130898681 G T RIMBP2 Missense_Mutation p.Q881K 0.29 deleterious(0.01) probably_damaging(0.966) TCGA-AA-A00N-01 12 130926919 130926919 G A RIMBP2 Silent p.L309L 0.16 TCGA-AA-A00N-01 12 131561402 131561402 C T GPR133 Silent p.C510C 0.40 TCGA-AA-A00N-01 12 13232899 13232899 C T KIAA1467 Nonsense_Mutation p.R607* 0.16 TCGA-AA-A00N-01 12 13241725 13241725 C T GSG1 Intron 0.09 TCGA-AA-A00N-01 12 13241738 13241738 C T GSG1 Intron 0.23 TCGA-AA-A00N-01 12 13242169 13242169 G A GSG1 Intron 0.19 TCGA-AA-A00N-01 12 132547064 132547064 C A EP400 Missense_Mutation p.L2718I 0.11 possibly_damaging(0.567) TCGA-AA-A00N-01 12 132589453 132589453 C T EP400NL Silent p.G164G 0.33 TCGA-AA-A00N-01 12 133218812 133218812 G A POLE Silent p.F1708F 0.10 TCGA-AA-A00N-01 12 133226295 133226295 A C POLE Missense_Mutation p.L1255V 0.21 deleterious(0) possibly_damaging(0.703) TCGA-AA-A00N-01 12 133250289 133250289 C A POLE Missense_Mutation p.V411L 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 133331468 133331468 G T ANKLE2 Missense_Mutation p.P145T 0.22 tolerated(0.65) benign(0.164) TCGA-AA-A00N-01 12 13906702 13906702 G A GRIN2B Missense_Mutation p.R187C 0.23 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 12 13906795 13906795 C T GRIN2B Missense_Mutation p.V156I 0.14 tolerated(0.06) probably_damaging(0.985) TCGA-AA-A00N-01 12 1399017 1399017 G T ERC1 Splice_Site p.X874_splice 0.19 TCGA-AA-A00N-01 12 14794076 14794076 C T GUCY2C Missense_Mutation p.A670T 0.14 deleterious(0.04) possibly_damaging(0.477) TCGA-AA-A00N-01 12 14993757 14993757 A C ART4 Missense_Mutation p.L159V 0.18 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 12 15475654 15475654 C T PTPRO 5'UTR 0.10 TCGA-AA-A00N-01 12 15636952 15636952 C T PTPRO Silent p.I40I 0.22 TCGA-AA-A00N-01 12 16753680 16753680 T C LMO3 Missense_Mutation p.K39E 0.08 deleterious(0) probably_damaging(0.963) TCGA-AA-A00N-01 12 1902862 1902862 G A CACNA2D4 Missense_Mutation p.P1125S 0.14 tolerated(0.28) benign(0.009) TCGA-AA-A00N-01 12 21028306 21028306 G T SLCO1B3 Nonsense_Mutation p.E289* 0.22 TCGA-AA-A00N-01 12 21207445 21207445 G A SLCO1B7 Silent p.A472A 0.19 TCGA-AA-A00N-01 12 21294568 21294568 A C SLCO1B1 Missense_Mutation p.K20N 0.08 deleterious(0.01) possibly_damaging(0.839) TCGA-AA-A00N-01 12 21370158 21370158 T C SLCO1B1 Missense_Mutation p.Y535H 0.19 tolerated(0.14) benign(0.098) TCGA-AA-A00N-01 12 21713332 21713332 C T GYS2 Missense_Mutation p.R386Q 0.24 tolerated(0.29) probably_damaging(0.999) TCGA-AA-A00N-01 12 22208151 22208151 G A CMAS Missense_Mutation p.R110Q 0.25 tolerated(0.06) possibly_damaging(0.567) TCGA-AA-A00N-01 12 22487005 22487005 C T ST8SIA1 Silent p.E54E 0.07 TCGA-AA-A00N-01 12 24736869 24736869 G T LINC00477 RNA 0.16 TCGA-AA-A00N-01 12 24736889 24736889 G A LINC00477 RNA 0.07 TCGA-AA-A00N-01 12 25257296 25257296 C T LRMP Missense_Mutation p.R350C 0.25 deleterious(0.03) probably_damaging(0.967) TCGA-AA-A00N-01 12 25297400 25297400 C T CASC1 Missense_Mutation p.E301K 0.07 tolerated(0.13) possibly_damaging(0.625) TCGA-AA-A00N-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.17 deleterious(0.04) possibly_damaging(0.506) TCGA-AA-A00N-01 12 25705884 25705884 T C IFLTD1 Missense_Mutation p.T4A 0.04 tolerated(0.12) benign(0.007) TCGA-AA-A00N-01 12 26276093 26276093 A G BHLHE41 Missense_Mutation p.S119P 0.10 tolerated(0.06) possibly_damaging(0.844) TCGA-AA-A00N-01 12 26493128 26493128 G A ITPR2 Missense_Mutation p.S2664L 0.09 deleterious(0) benign(0.088) TCGA-AA-A00N-01 12 26493228 26493228 C T ITPR2 Missense_Mutation p.A2631T 0.17 deleterious(0.02) probably_damaging(0.946) TCGA-AA-A00N-01 12 26629850 26629850 C A ITPR2 Nonsense_Mutation p.E2072* 0.25 TCGA-AA-A00N-01 12 2690805 2690805 C T CACNA1C Missense_Mutation p.R649C 0.26 deleterious(0) possibly_damaging(0.851) TCGA-AA-A00N-01 12 2692013 2692013 C T CACNA1C Missense_Mutation p.S710L 0.26 deleterious(0.04) possibly_damaging(0.592) TCGA-AA-A00N-01 12 2695044 2695044 G A CACNA1C Missense_Mutation p.S835N 0.10 tolerated(0.3) benign(0.003) TCGA-AA-A00N-01 12 26985728 26985728 C T ITPR2 5'UTR 0.17 TCGA-AA-A00N-01 12 2706656 2706656 C A CACNA1C Silent p.I969I 0.14 TCGA-AA-A00N-01 12 27450761 27450761 T G STK38L Missense_Mutation p.I36M 0.16 tolerated(0.65) benign(0.181) TCGA-AA-A00N-01 12 27540214 27540214 C T ARNTL2 Silent p.F206F 0.17 TCGA-AA-A00N-01 12 28116165 28116165 G A PTHLH Intron 0.22 TCGA-AA-A00N-01 12 28116192 28116192 C A PTHLH Intron 0.22 TCGA-AA-A00N-01 12 28515416 28515416 G A CCDC91 Missense_Mutation p.E208K 0.17 deleterious(0.01) benign(0.11) TCGA-AA-A00N-01 12 29494004 29494004 C A ERGIC2 3'UTR 0.09 TCGA-AA-A00N-01 12 29598250 29598250 C T OVCH1 Missense_Mutation p.G948S 0.32 deleterious(0.02) possibly_damaging(0.461) TCGA-AA-A00N-01 12 2994548 2994548 A C RHNO1 Missense_Mutation p.K6Q 0.10 deleterious(0.01) possibly_damaging(0.897) TCGA-AA-A00N-01 12 301814 301814 C T SLC6A12 Missense_Mutation p.A511T 0.31 deleterious(0.03) probably_damaging(0.968) TCGA-AA-A00N-01 12 306657 306657 C T SLC6A12 Missense_Mutation p.A321T 0.12 tolerated(0.39) possibly_damaging(0.899) TCGA-AA-A00N-01 12 30869574 30869574 C A CAPRIN2 Nonsense_Mutation p.E729* 0.21 TCGA-AA-A00N-01 12 30906661 30906661 C T CAPRIN2 Missense_Mutation p.E13K 0.13 deleterious_low_confidence(0.03) benign(0.003) TCGA-AA-A00N-01 12 32136129 32136129 C T KIAA1551 Missense_Mutation p.S747F 0.09 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 12 32138280 32138280 C T KIAA1551 Missense_Mutation p.S1464L 0.20 tolerated(0.21) benign(0.01) TCGA-AA-A00N-01 12 32891219 32891219 G T DNM1L Nonsense_Mutation p.E566* 0.13 TCGA-AA-A00N-01 12 3310413 3310413 G A TSPAN9 Silent p.L18L 0.06 TCGA-AA-A00N-01 12 331772 331772 C T SLC6A13 Missense_Mutation p.E481K 0.28 tolerated(0.23) possibly_damaging(0.904) TCGA-AA-A00N-01 12 34176901 34176901 A G ALG10 Missense_Mutation p.D59G 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 34179449 34179449 A G ALG10 Missense_Mutation p.T341A 0.18 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 12 39155952 39155952 C A CPNE8 Missense_Mutation p.K214N 0.14 tolerated(0.09) benign(0.345) TCGA-AA-A00N-01 12 39233749 39233749 A G CPNE8 Missense_Mutation p.V100A 0.21 tolerated(0.08) benign(0.257) TCGA-AA-A00N-01 12 39242371 39242371 G A CPNE8 Missense_Mutation p.R94C 0.12 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 39726112 39726112 G T KIF21A Silent p.I985I 0.05 TCGA-AA-A00N-01 12 39745637 39745637 C T KIF21A Missense_Mutation p.D539N 0.15 tolerated(0.23) probably_damaging(0.995) TCGA-AA-A00N-01 12 39994385 39994385 T C ABCD2 Missense_Mutation p.Y545C 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 40044129 40044129 T C C12orf40 Missense_Mutation p.F220S 0.11 tolerated(0.08) benign(0.098) TCGA-AA-A00N-01 12 40158311 40158311 G A SLC2A13 Silent p.V557V 0.24 TCGA-AA-A00N-01 12 406291 406291 C T KDM5A Missense_Mutation p.E1384K 0.23 deleterious(0.02) benign(0.044) TCGA-AA-A00N-01 12 40631867 40631867 A G LRRK2 Missense_Mutation p.K178R 0.17 tolerated(0.62) benign(0.11) TCGA-AA-A00N-01 12 40643657 40643657 G A LRRK2 Missense_Mutation p.E290K 0.29 tolerated(0.57) benign(0.009) TCGA-AA-A00N-01 12 40646756 40646756 C T LRRK2 Missense_Mutation p.S409F 0.25 deleterious(0.04) possibly_damaging(0.665) TCGA-AA-A00N-01 12 40761572 40761572 G T LRRK2 3'UTR 0.14 TCGA-AA-A00N-01 12 41419109 41419109 A G CNTN1 Missense_Mutation p.D894G 0.10 tolerated(0.11) benign(0.001) TCGA-AA-A00N-01 12 41966269 41966269 G A PDZRN4 Missense_Mutation p.R563Q 0.09 deleterious(0.01) possibly_damaging(0.836) TCGA-AA-A00N-01 12 41966951 41966951 G A PDZRN4 Silent p.S790S 0.12 TCGA-AA-A00N-01 12 42554583 42554583 T G YAF2 Missense_Mutation p.E141D 0.10 tolerated(0.16) possibly_damaging(0.631) TCGA-AA-A00N-01 12 42835143 42835143 C T PPHLN1 Silent p.F312F 0.26 TCGA-AA-A00N-01 12 43822596 43822596 C T ADAMTS20 Missense_Mutation p.V1166I 0.16 deleterious(0.03) benign(0.408) TCGA-AA-A00N-01 12 44693370 44693370 C A TMEM117 Missense_Mutation p.L206I 0.23 tolerated(0.08) probably_damaging(0.978) TCGA-AA-A00N-01 12 44915899 44915899 A C NELL2 Missense_Mutation p.F737V 0.27 tolerated(0.17) benign(0.146) TCGA-AA-A00N-01 12 4553376 4553376 G A FGF6 Nonsense_Mutation p.R125* 0.30 TCGA-AA-A00N-01 12 45568091 45568091 C A PLEKHA8P1 RNA 0.31 TCGA-AA-A00N-01 12 46211575 46211575 A G ARID2 Missense_Mutation p.T181A 0.26 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 12 4657313 4657313 C A RAD51AP1 Silent p.I142I 0.05 TCGA-AA-A00N-01 12 4665608 4665608 A G RAD51AP1 Missense_Mutation p.K288E 0.09 deleterious(0.03) possibly_damaging(0.823) TCGA-AA-A00N-01 12 47472178 47472178 C T AMIGO2 Missense_Mutation p.R203Q 0.26 tolerated(0.11) benign(0.01) TCGA-AA-A00N-01 12 47472485 47472485 G A AMIGO2 Missense_Mutation p.R101C 0.22 deleterious(0.04) probably_damaging(0.912) TCGA-AA-A00N-01 12 48140457 48140457 T G RAPGEF3 Intron 0.16 TCGA-AA-A00N-01 12 48376306 48376306 G A COL2A1 Silent p.I760I 0.18 TCGA-AA-A00N-01 12 48398055 48398055 A G COL2A1 Missense_Mutation p.V17A 0.13 unknown(0) TCGA-AA-A00N-01 12 48578667 48578667 G A C12orf68 3'UTR 0.26 TCGA-AA-A00N-01 12 48596461 48596461 G A OR10AD1 Silent p.I205I 0.18 TCGA-AA-A00N-01 12 48596596 48596596 G A OR10AD1 Silent p.L160L 0.06 TCGA-AA-A00N-01 12 48743880 48743880 C T ZNF641 5'UTR 0.26 TCGA-AA-A00N-01 12 49225941 49225941 C G DDX23 Missense_Mutation p.G662R 0.28 deleterious(0.01) benign(0.133) TCGA-AA-A00N-01 12 49254838 49254838 T C RND1 Missense_Mutation p.D132G 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 12 49308306 49308306 A C CCDC65 Missense_Mutation p.E140D 0.28 tolerated(0.4) benign(0.011) TCGA-AA-A00N-01 12 49426543 49426543 C T KMT2D Missense_Mutation p.R3982Q 0.24 unknown(0) TCGA-AA-A00N-01 12 49436357 49436357 A G KMT2D Missense_Mutation p.F1952L 0.15 possibly_damaging(0.84) TCGA-AA-A00N-01 12 5024141 5024141 G A KCNA1 3'UTR 0.08 TCGA-AA-A00N-01 12 5024902 5024902 G A KCNA1 3'UTR 0.23 TCGA-AA-A00N-01 12 5025933 5025933 G T KCNA1 3'UTR 0.27 TCGA-AA-A00N-01 12 5026102 5026102 T C KCNA1 3'UTR 0.11 TCGA-AA-A00N-01 12 5026887 5026887 G T KCNA1 3'UTR 0.14 TCGA-AA-A00N-01 12 50295121 50295121 G A FAIM2 Intron 0.16 TCGA-AA-A00N-01 12 50400311 50400311 C T RACGAP1 Missense_Mutation p.R65Q 0.06 tolerated(0.11) benign(0.179) TCGA-AA-A00N-01 12 50492826 50492826 T G SMARCD1 3'UTR 0.27 TCGA-AA-A00N-01 12 50570975 50570975 C A LIMA1 Nonsense_Mutation p.E719* 0.29 TCGA-AA-A00N-01 12 51074484 51074484 G A DIP2B Missense_Mutation p.A382T 0.21 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 12 51213564 51213564 T G ATF1 3'UTR 0.23 TCGA-AA-A00N-01 12 5153830 5153830 G A KCNA5 Missense_Mutation p.D173N 0.25 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A00N-01 12 51753078 51753078 G A GALNT6 Silent p.C402C 0.25 TCGA-AA-A00N-01 12 52163669 52163669 C T SCN8A Silent p.S1130S 0.12 TCGA-AA-A00N-01 12 52168104 52168104 C A SCN8A Missense_Mutation p.F1259L 0.18 deleterious(0) benign(0.005) TCGA-AA-A00N-01 12 52407521 52407521 C T GRASP Nonsense_Mutation p.R169* 0.16 TCGA-AA-A00N-01 12 52863047 52863047 G A KRT6C Silent p.G498G 0.28 TCGA-AA-A00N-01 12 52886667 52886667 G A KRT6A Silent p.F102F 0.18 TCGA-AA-A00N-01 12 52913760 52913760 G A KRT5 Silent p.F107F 0.13 TCGA-AA-A00N-01 12 52943888 52943888 G A KRT71 Missense_Mutation p.T194M 0.30 tolerated(0.24) benign(0.041) TCGA-AA-A00N-01 12 52946439 52946439 G A KRT71 Silent p.F141F 0.17 TCGA-AA-A00N-01 12 52992893 52992893 G A KRT72 Missense_Mutation p.R144W 0.14 deleterious(0.02) probably_damaging(0.993) TCGA-AA-A00N-01 12 53008395 53008395 C T KRT73 Missense_Mutation p.E263K 0.08 deleterious(0) benign(0.41) TCGA-AA-A00N-01 12 53010108 53010108 C T KRT73 Silent p.Q168Q 0.28 TCGA-AA-A00N-01 12 53070234 53070234 C T KRT1 Missense_Mutation p.E434K 0.09 deleterious(0) probably_damaging(0.97) TCGA-AA-A00N-01 12 53201155 53201155 C T KRT4 Missense_Mutation p.A457T 0.17 tolerated(0.19) benign(0.074) TCGA-AA-A00N-01 12 53421577 53421577 C T EIF4B Missense_Mutation p.R227C 0.16 tolerated(0.09) possibly_damaging(0.689) TCGA-AA-A00N-01 12 53454467 53454467 G A TENC1 Missense_Mutation p.R936Q 0.19 tolerated(0.41) benign(0.013) TCGA-AA-A00N-01 12 53881025 53881025 C A MAP3K12 Missense_Mutation p.D51Y 0.07 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-AA-A00N-01 12 54339141 54339141 T C HOXC13 3'UTR 0.31 TCGA-AA-A00N-01 12 54367094 54367094 C T HOXC11 Silent p.G23G 0.18 TCGA-AA-A00N-01 12 54369260 54369260 T A HOXC11 3'UTR 0.36 TCGA-AA-A00N-01 12 54379403 54379403 G A HOXC10 Silent p.A120A 0.26 TCGA-AA-A00N-01 12 54385563 54385563 T G RP11-834C11.12 Intron 0.14 TCGA-AA-A00N-01 12 54396575 54396575 G A HOXC9 3'UTR 0.16 TCGA-AA-A00N-01 12 54427027 54427027 G A HOXC5 Missense_Mutation p.G41S 0.06 tolerated(0.1) benign(0) TCGA-AA-A00N-01 12 54427750 54427750 G - HOXC5 Intron 0.09 TCGA-AA-A00N-01 12 54447751 54447751 G A HOXC4 Silent p.P15P 0.25 TCGA-AA-A00N-01 12 54448667 54448667 G A HOXC4 Missense_Mutation p.R158H 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 54645900 54645900 C T CBX5 Silent p.E83E 0.20 TCGA-AA-A00N-01 12 54675234 54675234 A G HNRNPA1 Missense_Mutation p.D27G 0.12 deleterious(0.02) benign(0.23) TCGA-AA-A00N-01 12 54686929 54686929 A G NFE2 Silent p.S117S 0.24 TCGA-AA-A00N-01 12 54757560 54757560 A T GPR84 Missense_Mutation p.W26R 0.08 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 12 54765456 54765456 C A ZNF385A Missense_Mutation p.E155D 0.22 tolerated(0.42) benign(0.069) TCGA-AA-A00N-01 12 54936426 54936426 G A NCKAP1L Missense_Mutation p.R1114Q 0.20 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 12 54943876 54943876 C G PDE1B Intron 0.14 TCGA-AA-A00N-01 12 54962968 54962968 G A PDE1B Silent p.R76R 0.31 TCGA-AA-A00N-01 12 54970476 54970476 G A PDE1B Missense_Mutation p.A500T 0.21 deleterious(0.04) benign(0.018) TCGA-AA-A00N-01 12 55421694 55421694 G T NEUROD4 3'UTR 0.25 TCGA-AA-A00N-01 12 55421766 55421766 C A NEUROD4 3'UTR 0.16 TCGA-AA-A00N-01 12 55423252 55423252 T C NEUROD4 3'UTR 0.20 TCGA-AA-A00N-01 12 55524311 55524311 A G OR9K2 Missense_Mutation p.I253M 0.22 tolerated(0.26) benign(0.3) TCGA-AA-A00N-01 12 55641265 55641265 C A OR6C74 Nonsense_Mutation p.S65* 0.29 TCGA-AA-A00N-01 12 5603410 5603410 C T NTF3 Silent p.L23L 0.16 TCGA-AA-A00N-01 12 56118232 56118232 C T RDH5 Missense_Mutation p.A287V 0.10 deleterious(0.03) possibly_damaging(0.54) TCGA-AA-A00N-01 12 56221485 56221485 A G DNAJC14 Missense_Mutation p.F320L 0.06 tolerated(0.93) benign(0.001) TCGA-AA-A00N-01 12 56231634 56231634 G A MMP19 Silent p.F351F 0.11 TCGA-AA-A00N-01 12 56522398 56522398 G T ESYT1 Nonsense_Mutation p.E99* 0.09 TCGA-AA-A00N-01 12 56536809 56536809 G A ESYT1 Missense_Mutation p.R1009Q 0.09 tolerated(0.13) possibly_damaging(0.696) TCGA-AA-A00N-01 12 56630210 56630210 G A SLC39A5 Missense_Mutation p.E326K 0.22 tolerated(0.85) benign(0.126) TCGA-AA-A00N-01 12 56638970 56638970 A C ANKRD52 Missense_Mutation p.H803Q 0.16 tolerated(0.14) possibly_damaging(0.849) TCGA-AA-A00N-01 12 56956299 56956299 A C RBMS2 Missense_Mutation p.K55N 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A00N-01 12 56997201 56997201 A G BAZ2A Missense_Mutation p.V1076A 0.30 tolerated(0.77) benign(0.046) TCGA-AA-A00N-01 12 57114545 57114545 A G NACA Missense_Mutation p.S257P 0.16 tolerated_low_confidence(0.1) possibly_damaging(0.504) TCGA-AA-A00N-01 12 5722088 5722088 G A ANO2 Silent p.F655F 0.17 TCGA-AA-A00N-01 12 57328006 57328006 A G SDR9C7 Missense_Mutation p.F14L 0.21 tolerated(0.07) benign(0.003) TCGA-AA-A00N-01 12 57345977 57345977 C T RDH16 Missense_Mutation p.V264M 0.30 deleterious(0) possibly_damaging(0.782) TCGA-AA-A00N-01 12 57398064 57398064 T C ZBTB39 Missense_Mutation p.D213G 0.18 tolerated(0.24) benign(0.149) TCGA-AA-A00N-01 12 57485739 57485739 C T NAB2 Silent p.F305F 0.22 TCGA-AA-A00N-01 12 57861838 57861838 G A GLI1 Missense_Mutation p.R380Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 12 57894175 57894175 G A MARS Missense_Mutation p.R388Q 0.20 tolerated(0.3) benign(0.02) TCGA-AA-A00N-01 12 57920148 57920148 G A MBD6 Missense_Mutation p.S466N 0.22 deleterious_low_confidence(0) unknown(0) TCGA-AA-A00N-01 12 57939811 57939811 C T DCTN2 Silent p.A35A 0.19 TCGA-AA-A00N-01 12 57968866 57968866 G A KIF5A Splice_Site p.X573_splice 0.15 TCGA-AA-A00N-01 12 58022455 58022455 G A B4GALNT1 Intron 0.19 TCGA-AA-A00N-01 12 59274637 59274637 C T LRIG3 Silent p.S509S 0.17 TCGA-AA-A00N-01 12 60169191 60169191 C T SLC16A7 Missense_Mutation p.S372F 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 6219717 6219717 A G VWF Missense_Mutation p.Y119H 0.26 tolerated(0.05) probably_damaging(0.942) TCGA-AA-A00N-01 12 62777896 62777896 G A USP15 Missense_Mutation p.R429Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 62887759 62887759 G A MON2 Silent p.P80P 0.19 TCGA-AA-A00N-01 12 62902072 62902072 G A MON2 Missense_Mutation p.E266K 0.26 deleterious(0) possibly_damaging(0.584) TCGA-AA-A00N-01 12 62938732 62938732 T C MON2 Missense_Mutation p.S841P 0.14 tolerated(0.2) possibly_damaging(0.543) TCGA-AA-A00N-01 12 64020267 64020267 G T DPY19L2 Missense_Mutation p.F281L 0.26 deleterious(0.04) benign(0.25) TCGA-AA-A00N-01 12 64057543 64057543 C A DPY19L2 Nonsense_Mutation p.E149* 0.23 TCGA-AA-A00N-01 12 64790747 64790747 C T RPS11P6 RNA 0.15 TCGA-AA-A00N-01 12 64819643 64819643 C T XPOT Missense_Mutation p.R541W 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 64828619 64828619 A G XPOT Missense_Mutation p.H872R 0.21 tolerated(0.19) benign(0.004) TCGA-AA-A00N-01 12 65563510 65563510 A C LEMD3 Missense_Mutation p.K45T 0.27 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 12 65634753 65634753 C T LEMD3 Missense_Mutation p.R731C 0.08 deleterious(0.01) possibly_damaging(0.518) TCGA-AA-A00N-01 12 65637243 65637243 C T LEMD3 Missense_Mutation p.P794L 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 12 65857005 65857005 C T MSRB3 Missense_Mutation p.S161L 0.30 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 12 66622063 66622063 G A IRAK3 Missense_Mutation p.R267Q 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 66849331 66849331 A C GRIP1 Silent p.S352S 0.28 TCGA-AA-A00N-01 12 67072770 67072770 G A GRIP1 5'Flank 0.30 TCGA-AA-A00N-01 12 6756047 6756047 T C ACRBP Missense_Mutation p.T59A 0.19 tolerated(0.53) probably_damaging(0.998) TCGA-AA-A00N-01 12 67699651 67699651 C A CAND1 Missense_Mutation p.L735I 0.17 tolerated(0.06) benign(0.388) TCGA-AA-A00N-01 12 6804264 6804264 G A PIANP Intron 0.22 TCGA-AA-A00N-01 12 6840199 6840199 G A COPS7A Silent p.S274S 0.09 TCGA-AA-A00N-01 12 68551714 68551714 G A IFNG Silent p.F115F 0.20 TCGA-AA-A00N-01 12 68619266 68619266 T G IL26 Missense_Mutation p.K62N 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 69233173 69233173 A C MDM2 Missense_Mutation p.E346D 0.31 tolerated(0.51) benign(0.02) TCGA-AA-A00N-01 12 69233618 69233618 T C MDM2 Missense_Mutation p.Y495H 0.24 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 12 6948479 6948479 G T LEPREL2 Nonsense_Mutation p.E688* 0.23 TCGA-AA-A00N-01 12 6978505 6978505 A C TPI1 Missense_Mutation p.E173D 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-AA-A00N-01 12 70037366 70037366 C T BEST3 3'UTR 0.12 TCGA-AA-A00N-01 12 7023157 7023157 A C LRRC23 3'UTR 0.18 TCGA-AA-A00N-01 12 71523115 71523115 A G TSPAN8 Missense_Mutation p.I219T 0.21 deleterious(0) possibly_damaging(0.809) TCGA-AA-A00N-01 12 72863540 72863540 C A TRHDE Missense_Mutation p.L395I 0.32 tolerated(0.26) benign(0.263) TCGA-AA-A00N-01 12 7362394 7362394 G A PEX5 Missense_Mutation p.R574H 0.24 deleterious(0) benign(0.303) TCGA-AA-A00N-01 12 74933705 74933705 G A ATXN7L3B 3'UTR 0.22 TCGA-AA-A00N-01 12 7633798 7633798 G T CD163 Missense_Mutation p.S1101Y 0.24 tolerated(0.46) probably_damaging(0.979) TCGA-AA-A00N-01 12 7636043 7636043 G T CD163 Missense_Mutation p.S1003Y 0.28 deleterious(0) probably_damaging(0.971) TCGA-AA-A00N-01 12 77449891 77449891 C T E2F7 Missense_Mutation p.R38Q 0.18 tolerated(0.12) benign(0.081) TCGA-AA-A00N-01 12 7805355 7805355 C T APOBEC1 Missense_Mutation p.E41K 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 12 78400765 78400765 C A NAV3 Missense_Mutation p.P483T 0.07 tolerated(0.23) benign(0.001) TCGA-AA-A00N-01 12 7842532 7842532 T C GDF3 Missense_Mutation p.D346G 0.22 tolerated(0.08) benign(0.083) TCGA-AA-A00N-01 12 7848241 7848241 G T GDF3 Silent p.V28V 0.19 TCGA-AA-A00N-01 12 7883483 7883483 C A CLEC4C Missense_Mutation p.R136I 0.22 tolerated(0.2) benign(0.002) TCGA-AA-A00N-01 12 7972077 7972077 C T SLC2A14 Splice_Site p.X380_splice 0.17 TCGA-AA-A00N-01 12 7981304 7981304 C T SLC2A14 Silent p.T247T 0.27 TCGA-AA-A00N-01 12 80328520 80328520 G A PPP1R12A Silent p.A64A 0.31 TCGA-AA-A00N-01 12 80648868 80648868 G A OTOGL Missense_Mutation p.R488Q 0.16 deleterious(0.02) benign(0.137) TCGA-AA-A00N-01 12 80761386 80761386 C A OTOGL Missense_Mutation p.P2117H 0.23 deleterious(0.01) probably_damaging(0.976) TCGA-AA-A00N-01 12 8077019 8077019 G A SLC2A3 Missense_Mutation p.S352F 0.05 deleterious(0.04) benign(0.25) TCGA-AA-A00N-01 12 80899956 80899956 A G PTPRQ Missense_Mutation p.N805S 0.20 tolerated(0.07) benign(0.253) TCGA-AA-A00N-01 12 80940470 80940470 G A PTPRQ Missense_Mutation p.E1333K 0.16 deleterious(0) probably_damaging(0.987) TCGA-AA-A00N-01 12 81102639 81102639 C T MYF6 Missense_Mutation p.S210L 0.16 deleterious(0.01) benign(0.029) TCGA-AA-A00N-01 12 81647354 81647354 C T ACSS3 Nonsense_Mutation p.R634* 0.15 TCGA-AA-A00N-01 12 8211277 8211277 T G C3AR1 3'UTR 0.26 TCGA-AA-A00N-01 12 8211947 8211947 C T C3AR1 Missense_Mutation p.E279K 0.22 tolerated(0.76) benign(0) TCGA-AA-A00N-01 12 82147877 82147877 T G PPFIA2 Silent p.R42R 0.21 TCGA-AA-A00N-01 12 8376065 8376065 C T FAM90A1 Missense_Mutation p.E138K 0.12 deleterious(0.01) possibly_damaging(0.743) TCGA-AA-A00N-01 12 85277792 85277792 G T SLC6A15 Missense_Mutation p.S201Y 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 12 85450752 85450752 C T LRRIQ1 Silent p.C727C 0.18 TCGA-AA-A00N-01 12 85459097 85459097 T C LRRIQ1 Missense_Mutation p.C817R 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 12 86373822 86373822 G A MGAT4C Nonsense_Mutation p.R228* 0.21 TCGA-AA-A00N-01 12 86374176 86374176 G A MGAT4C Nonsense_Mutation p.R110* 0.28 TCGA-AA-A00N-01 12 88391950 88391950 C A C12orf50 Nonsense_Mutation p.E51* 0.15 TCGA-AA-A00N-01 12 88476854 88476854 C A CEP290 Nonsense_Mutation p.E1656* 0.17 TCGA-AA-A00N-01 12 88479859 88479859 C T CEP290 Missense_Mutation p.R1465Q 0.26 benign(0.021) TCGA-AA-A00N-01 12 88910162 88910162 C T KITLG Missense_Mutation p.A157T 0.29 tolerated(1) benign(0.002) TCGA-AA-A00N-01 12 89860692 89860692 A G POC1B Missense_Mutation p.L296S 0.19 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 12 89985005 89985005 G A ATP2B1 Missense_Mutation p.S1140L 0.12 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-AA-A00N-01 12 89995141 89995141 A G ATP2B1 Missense_Mutation p.S1044P 0.26 deleterious(0) possibly_damaging(0.736) TCGA-AA-A00N-01 12 9009773 9009773 C A A2ML1 Silent p.G954G 0.16 TCGA-AA-A00N-01 12 9013849 9013849 G T A2ML1 Missense_Mutation p.R1153I 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A00N-01 12 9020926 9020926 G A A2ML1 Missense_Mutation p.R1345Q 0.07 tolerated(0.08) benign(0.007) TCGA-AA-A00N-01 12 91348192 91348192 G A CCER1 Missense_Mutation p.R110W 0.14 tolerated(0.09) possibly_damaging(0.722) TCGA-AA-A00N-01 12 9242596 9242596 C T A2M Missense_Mutation p.A874T 0.07 tolerated(0.18) possibly_damaging(0.465) TCGA-AA-A00N-01 12 9246106 9246106 C T A2M Missense_Mutation p.R732Q 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A00N-01 12 9252063 9252063 G A A2M Missense_Mutation p.R539W 0.23 deleterious(0) probably_damaging(0.987) TCGA-AA-A00N-01 12 9260159 9260159 A G A2M Silent p.G280G 0.28 TCGA-AA-A00N-01 12 9262564 9262564 G T A2M Missense_Mutation p.S191Y 0.24 deleterious(0.02) benign(0.191) TCGA-AA-A00N-01 12 92821901 92821901 C T CLLU1OS Missense_Mutation p.E8K 0.29 deleterious_low_confidence(0) benign(0.001) TCGA-AA-A00N-01 12 9301482 9301482 C A PZP 3'UTR 0.32 TCGA-AA-A00N-01 12 93157896 93157896 C T PLEKHG7 Missense_Mutation p.S287L 0.16 tolerated(0.7) benign(0.005) TCGA-AA-A00N-01 12 93968645 93968645 G A SOCS2 Missense_Mutation p.R96Q 0.18 deleterious(0) probably_damaging(0.912) TCGA-AA-A00N-01 12 93968737 93968737 G A SOCS2 Missense_Mutation p.D127N 0.06 tolerated(0.06) benign(0.172) TCGA-AA-A00N-01 12 93969090 93969090 A C SOCS2 3'UTR 0.28 TCGA-AA-A00N-01 12 94620946 94620946 G A PLXNC1 Missense_Mutation p.E639K 0.13 tolerated(0.33) benign(0.003) TCGA-AA-A00N-01 12 94975836 94975836 G A TMCC3 Missense_Mutation p.S186L 0.34 deleterious(0.02) benign(0.004) TCGA-AA-A00N-01 12 95531378 95531378 C A FGD6 Nonsense_Mutation p.E972* 0.22 TCGA-AA-A00N-01 12 95927545 95927545 C T USP44 Missense_Mutation p.R163Q 0.23 tolerated(0.13) benign(0.042) TCGA-AA-A00N-01 12 96266209 96266209 C A CCDC38 Missense_Mutation p.K436N 0.07 deleterious(0.03) possibly_damaging(0.878) TCGA-AA-A00N-01 12 96354204 96354204 G T AMDHD1 Missense_Mutation p.D206Y 0.08 deleterious(0.03) probably_damaging(0.925) TCGA-AA-A00N-01 12 96388725 96388725 T G HAL Silent p.P98P 0.08 TCGA-AA-A00N-01 12 96407626 96407626 A G LTA4H Missense_Mutation p.F404L 0.35 deleterious(0) possibly_damaging(0.619) TCGA-AA-A00N-01 12 96407630 96407630 C A LTA4H Missense_Mutation p.E402D 0.16 tolerated(0.59) benign(0.001) TCGA-AA-A00N-01 12 96674610 96674610 G A CDK17 Nonsense_Mutation p.R504* 0.21 TCGA-AA-A00N-01 12 97102502 97102502 G A C12orf55 Silent p.A2215A 0.20 TCGA-AA-A00N-01 12 97334196 97334196 G A NEDD1 Missense_Mutation p.R383Q 0.32 tolerated(0.12) benign(0.045) TCGA-AA-A00N-01 12 9875343 9875343 T G CLECL1 Missense_Mutation p.K128T 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A00N-01 12 98849693 98849693 C A SLC9A7P1 RNA 0.23 TCGA-AA-A00N-01 12 98993793 98993793 C T SLC25A3 Silent p.F235F 0.16 TCGA-AA-A00N-01 12 99064795 99064795 A C APAF1 Missense_Mutation p.K513N 0.22 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 12 9907823 9907823 G A CD69 Silent p.F74F 0.19 TCGA-AA-A00N-01 12 99446978 99446978 G A ANKS1B Missense_Mutation p.S912L 0.17 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 13 100635350 100635350 C T ZIC2 Silent p.F344F 0.22 TCGA-AA-A00N-01 13 101077904 101077904 G A PCCA Silent p.S588S 0.20 TCGA-AA-A00N-01 13 103257200 103257200 G A TPP2 Missense_Mutation p.D75N 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 13 103268777 103268777 T C TPP2 Missense_Mutation p.V141A 0.25 tolerated(0.52) benign(0.002) TCGA-AA-A00N-01 13 103301293 103301293 C T TPP2 Nonsense_Mutation p.R889* 0.12 TCGA-AA-A00N-01 13 103381877 103381877 G A CCDC168 Missense_Mutation p.S2428F 0.21 deleterious(0) unknown(0) TCGA-AA-A00N-01 13 103382662 103382662 A G CCDC168 Silent p.C2166C 0.10 TCGA-AA-A00N-01 13 103385743 103385743 C T CCDC168 Silent p.S1139S 0.09 TCGA-AA-A00N-01 13 103386293 103386293 C T CCDC168 Missense_Mutation p.R956Q 0.25 tolerated(1) benign(0.417) TCGA-AA-A00N-01 13 103386918 103386918 C T CCDC168 Missense_Mutation p.D748N 0.07 tolerated(0.19) possibly_damaging(0.741) TCGA-AA-A00N-01 13 103388897 103388897 C T CCDC168 Missense_Mutation p.R88Q 0.22 tolerated(0.06) benign(0.004) TCGA-AA-A00N-01 13 103389059 103389059 A G CCDC168 Missense_Mutation p.I34T 0.33 tolerated(0.13) benign(0.291) TCGA-AA-A00N-01 13 103491974 103491974 G T BIVM-ERCC5 Missense_Mutation p.R396I 0.13 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-AA-A00N-01 13 103498568 103498568 G T ERCC5 5'UTR 0.16 TCGA-AA-A00N-01 13 103504590 103504590 C T BIVM-ERCC5 Missense_Mutation p.R497C 0.25 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 13 103510724 103510724 G T BIVM-ERCC5 Nonsense_Mutation p.E636* 0.20 TCGA-AA-A00N-01 13 103718557 103718557 A C SLC10A2 Missense_Mutation p.S15A 0.31 tolerated(0.09) benign(0.034) TCGA-AA-A00N-01 13 109753197 109753197 C T MYO16 Nonsense_Mutation p.R1112* 0.22 TCGA-AA-A00N-01 13 110864824 110864824 T G COL4A1 Silent p.G109G 0.20 TCGA-AA-A00N-01 13 111373378 111373378 A C ING1 3'UTR 0.24 TCGA-AA-A00N-01 13 111531847 111531847 G A ANKRD10 3'UTR 0.30 TCGA-AA-A00N-01 13 112724931 112724931 C T SOX1 3'UTR 0.06 TCGA-AA-A00N-01 13 112725233 112725233 G T SOX1 3'UTR 0.21 TCGA-AA-A00N-01 13 112725856 112725856 C T SOX1 3'UTR 0.18 TCGA-AA-A00N-01 13 113333589 113333589 C T C13orf35 5'UTR 0.53 TCGA-AA-A00N-01 13 113516853 113516853 C T ATP11A Silent p.F985F 0.17 TCGA-AA-A00N-01 13 113783802 113783802 C T F10 Missense_Mutation p.A36V 0.30 tolerated(0.27) benign(0.003) TCGA-AA-A00N-01 13 114079462 114079462 T C ADPRHL1 Missense_Mutation p.K227E 0.18 deleterious(0.03) probably_damaging(1) TCGA-AA-A00N-01 13 114157838 114157838 G T TMCO3 Nonsense_Mutation p.E325* 0.05 TCGA-AA-A00N-01 13 114287439 114287439 C T TFDP1 Missense_Mutation p.R105C 0.25 deleterious(0) possibly_damaging(0.836) TCGA-AA-A00N-01 13 114287483 114287483 C A TFDP1 Missense_Mutation p.F119L 0.29 deleterious(0.04) benign(0.042) TCGA-AA-A00N-01 13 115030682 115030682 G A CDC16 Missense_Mutation p.E524K 0.22 deleterious(0.01) benign(0.336) TCGA-AA-A00N-01 13 115037740 115037740 C T CDC16 Missense_Mutation p.P562L 0.18 deleterious_low_confidence(0.02) benign(0.016) TCGA-AA-A00N-01 13 19751107 19751107 C T TUBA3C Missense_Mutation p.R339H 0.26 tolerated_low_confidence(0.05) benign(0.013) TCGA-AA-A00N-01 13 20025334 20025334 C T TPTE2 Missense_Mutation p.R258Q 0.16 tolerated(0.63) benign(0.006) TCGA-AA-A00N-01 13 20220824 20220824 C A MPHOSPH8 Missense_Mutation p.S204Y 0.29 tolerated_low_confidence(0.12) benign(0.157) TCGA-AA-A00N-01 13 20425925 20425925 C A ZMYM5 Missense_Mutation p.E132D 0.25 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-AA-A00N-01 13 20611029 20611029 T G ZMYM2 Missense_Mutation p.F758V 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 13 20978300 20978300 C T CRYL1 Missense_Mutation p.A310T 0.28 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-AA-A00N-01 13 21331600 21331600 C A N6AMT2 Missense_Mutation p.E46D 0.14 deleterious(0) possibly_damaging(0.64) TCGA-AA-A00N-01 13 21557817 21557817 G A LATS2 Silent p.I676I 0.10 TCGA-AA-A00N-01 13 22255225 22255225 C T FGF9 Nonsense_Mutation p.R108* 0.27 TCGA-AA-A00N-01 13 23777933 23777933 C T SGCG Missense_Mutation p.R34C 0.21 deleterious(0.04) probably_damaging(1) TCGA-AA-A00N-01 13 23904858 23904858 C T SACS Missense_Mutation p.R4386Q 0.44 benign(0.113) TCGA-AA-A00N-01 13 23905708 23905708 C T SACS Missense_Mutation p.A4103T 0.32 probably_damaging(0.989) TCGA-AA-A00N-01 13 23905755 23905755 T C SACS Missense_Mutation p.Y4087C 0.23 probably_damaging(0.996) TCGA-AA-A00N-01 13 23908186 23908186 C A SACS Missense_Mutation p.D3277Y 0.13 probably_damaging(0.998) TCGA-AA-A00N-01 13 23913577 23913577 C A SACS Nonsense_Mutation p.E1480* 0.16 TCGA-AA-A00N-01 13 23929713 23929713 C T SACS Silent p.P346P 0.28 TCGA-AA-A00N-01 13 23929924 23929924 C T SACS Missense_Mutation p.R276H 0.17 probably_damaging(0.997) TCGA-AA-A00N-01 13 24190124 24190124 G A TNFRSF19 Missense_Mutation p.R100H 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 13 24465742 24465742 C T C1QTNF9B Missense_Mutation p.E230K 0.13 tolerated(0.09) benign(0.03) TCGA-AA-A00N-01 13 24471136 24471136 A G C1QTNF9B 5'UTR 0.17 TCGA-AA-A00N-01 13 24863310 24863310 T C SPATA13 Silent p.L947L 0.19 TCGA-AA-A00N-01 13 25281162 25281162 A G ATP12A Missense_Mutation p.D730G 0.25 tolerated(1) benign(0.001) TCGA-AA-A00N-01 13 25338341 25338341 G A RNF17 5'UTR 0.30 TCGA-AA-A00N-01 13 25367200 25367200 A T RNF17 Missense_Mutation p.E319V 0.27 deleterious(0.04) benign(0.354) TCGA-AA-A00N-01 13 25458188 25458188 G A CENPJ Missense_Mutation p.T1246M 0.23 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 13 25463526 25463526 G A CENPJ Nonsense_Mutation p.R1077* 0.23 TCGA-AA-A00N-01 13 25670420 25670420 C T PABPC3 Silent p.Y28Y 0.21 TCGA-AA-A00N-01 13 25671874 25671874 G A PABPC3 Missense_Mutation p.R513H 0.32 tolerated(0.23) benign(0.022) TCGA-AA-A00N-01 13 25910281 25910281 C A NUPL1 Intron 0.16 TCGA-AA-A00N-01 13 26043227 26043227 G A ATP8A2 Silent p.P63P 0.24 TCGA-AA-A00N-01 13 26116179 26116180 - A ATP8A2 Frame_Shift_Ins p.S260Kfs*8 0.26 TCGA-AA-A00N-01 13 26156085 26156085 G A ATP8A2 Silent p.A712A 0.23 TCGA-AA-A00N-01 13 26436487 26436487 T G ATP8A2 Missense_Mutation p.F1042V 0.06 tolerated(0.23) probably_damaging(0.955) TCGA-AA-A00N-01 13 26789577 26789577 G A RNF6 Missense_Mutation p.R148W 0.21 deleterious(0.01) possibly_damaging(0.72) TCGA-AA-A00N-01 13 28127441 28127441 G A LNX2 Missense_Mutation p.A561V 0.23 tolerated(0.26) benign(0.001) TCGA-AA-A00N-01 13 28895610 28895610 C T FLT1 Missense_Mutation p.R1055K 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 13 29252299 29252299 A G POMP 3'UTR 0.24 TCGA-AA-A00N-01 13 30002836 30002836 G T MTUS2 Intron 0.23 TCGA-AA-A00N-01 13 30062051 30062051 C T MTUS2 Silent p.T1148T 0.20 TCGA-AA-A00N-01 13 30066842 30066842 C T MTUS2 Missense_Mutation p.R1199W 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 13 30521893 30521893 C A LINC00544 RNA 0.17 TCGA-AA-A00N-01 13 31231902 31231902 A G USPL1 Missense_Mutation p.D563G 0.30 tolerated(0.27) benign(0.013) TCGA-AA-A00N-01 13 32749726 32749726 C A FRY Missense_Mutation p.S793Y 0.21 deleterious(0) benign(0.092) TCGA-AA-A00N-01 13 32839599 32839599 C T FRY Missense_Mutation p.R2598C 0.16 tolerated(0.05) benign(0.008) TCGA-AA-A00N-01 13 32884845 32884845 A C ZAR1L Nonsense_Mutation p.Y226* 0.17 TCGA-AA-A00N-01 13 32885595 32885595 C T ZAR1L Silent p.A156A 0.19 TCGA-AA-A00N-01 13 32906611 32906611 T G BRCA2 Missense_Mutation p.I332M 0.19 tolerated(0.05) probably_damaging(0.957) TCGA-AA-A00N-01 13 32914965 32914965 T G BRCA2 Missense_Mutation p.F2158C 0.17 deleterious(0.03) probably_damaging(0.927) TCGA-AA-A00N-01 13 32954279 32954279 A G BRCA2 Missense_Mutation p.T3085A 0.25 tolerated(0.6) benign(0.078) TCGA-AA-A00N-01 13 32972706 32972706 T G BRCA2 Silent p.L3352L 0.15 TCGA-AA-A00N-01 13 33349185 33349185 C T PDS5B Nonsense_Mutation p.R1447* 0.17 TCGA-AA-A00N-01 13 35692599 35692599 G T NBEA Missense_Mutation p.R744I 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 13 35733188 35733188 A C NBEA Missense_Mutation p.K960N 0.15 tolerated(0.33) benign(0.013) TCGA-AA-A00N-01 13 35770201 35770201 G A NBEA Missense_Mutation p.E1710K 0.10 deleterious_low_confidence(0.04) benign(0.097) TCGA-AA-A00N-01 13 36049123 36049123 A C MAB21L1 3'UTR 0.15 TCGA-AA-A00N-01 13 36050012 36050012 G A MAB21L1 Silent p.F88F 0.23 TCGA-AA-A00N-01 13 36124683 36124683 C T NBEA Missense_Mutation p.R2219C 0.12 deleterious(0.05) benign(0.309) TCGA-AA-A00N-01 13 36241564 36241564 G T NBEA Nonsense_Mutation p.G2819* 0.21 TCGA-AA-A00N-01 13 36396967 36396967 C T DCLK1 Missense_Mutation p.E485K 0.17 deleterious(0.01) possibly_damaging(0.502) TCGA-AA-A00N-01 13 36402442 36402442 G A DCLK1 Missense_Mutation p.S411L 0.28 deleterious(0.02) possibly_damaging(0.519) TCGA-AA-A00N-01 13 36776117 36776117 C A SOHLH2 Missense_Mutation p.K131N 0.12 deleterious(0) benign(0.365) TCGA-AA-A00N-01 13 36909193 36909193 C T SPG20 Missense_Mutation p.D259N 0.21 tolerated(0.14) benign(0.29) TCGA-AA-A00N-01 13 36909276 36909276 A C SPG20 Missense_Mutation p.F231C 0.17 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 13 37614587 37614587 A C SUPT20H Missense_Mutation p.I174M 0.18 deleterious(0.05) benign(0.119) TCGA-AA-A00N-01 13 38154719 38154719 A C POSTN Nonsense_Mutation p.L503* 0.20 TCGA-AA-A00N-01 13 38162027 38162027 T G POSTN Missense_Mutation p.K180Q 0.18 deleterious(0) probably_damaging(0.955) TCGA-AA-A00N-01 13 38211382 38211382 G T TRPC4 Silent p.I869I 0.35 TCGA-AA-A00N-01 13 38237742 38237742 G T TRPC4 Missense_Mutation p.S500Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 13 39263085 39263085 G A FREM2 Missense_Mutation p.R535H 0.16 deleterious(0.03) probably_damaging(0.988) TCGA-AA-A00N-01 13 39265333 39265333 G A FREM2 Silent p.G1284G 0.28 TCGA-AA-A00N-01 13 39612648 39612648 G A NHLRC3 5'UTR 0.20 TCGA-AA-A00N-01 13 39622069 39622069 C A NHLRC3 3'UTR 0.41 TCGA-AA-A00N-01 13 40261654 40261654 A C COG6 Missense_Mutation p.E268A 0.27 deleterious(0.04) probably_damaging(0.991) TCGA-AA-A00N-01 13 40325236 40325236 T G COG6 3'UTR 0.12 TCGA-AA-A00N-01 13 41134523 41134523 C T FOXO1 Missense_Mutation p.E369K 0.15 tolerated(0.7) probably_damaging(0.981) TCGA-AA-A00N-01 13 42265546 42265546 C T VWA8 Missense_Mutation p.R1259Q 0.14 tolerated(0.42) benign(0.004) TCGA-AA-A00N-01 13 43175020 43175020 G A TNFSF11 Silent p.A145A 0.24 TCGA-AA-A00N-01 13 43180898 43180898 G A TNFSF11 Silent p.G266G 0.18 TCGA-AA-A00N-01 13 43462575 43462575 C T EPSTI1 Silent p.E348E 0.05 TCGA-AA-A00N-01 13 43930243 43930243 C T ENOX1 Missense_Mutation p.G212D 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 13 45911665 45911665 G A TPT1 Intron 0.38 TCGA-AA-A00N-01 13 46533644 46533644 G A ZC3H13 3'Flank 0.27 TCGA-AA-A00N-01 13 46541939 46541939 G A ZC3H13 Nonsense_Mutation p.R1341* 0.24 TCGA-AA-A00N-01 13 46584554 46584554 C T ZC3H13 Silent p.P225P 0.07 TCGA-AA-A00N-01 13 46728971 46728971 T C LCP1 Missense_Mutation p.N181S 0.24 deleterious(0) possibly_damaging(0.824) TCGA-AA-A00N-01 13 46919624 46919624 C A KIAA0226L Missense_Mutation p.K581N 0.23 deleterious(0) probably_damaging(0.978) TCGA-AA-A00N-01 13 47011727 47011727 C A PPP1R2P4 RNA 0.06 TCGA-AA-A00N-01 13 47011838 47011838 C T PPP1R2P4 RNA 0.24 TCGA-AA-A00N-01 13 47409549 47409549 G T HTR2A Missense_Mutation p.S280Y 0.33 deleterious(0.03) possibly_damaging(0.886) TCGA-AA-A00N-01 13 48986286 48986286 A G LPAR6 Missense_Mutation p.S92P 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 13 49794791 49794791 C T MLNR Silent p.F106F 0.29 TCGA-AA-A00N-01 13 50080833 50080833 G A PHF11 Missense_Mutation p.E53K 0.18 tolerated(0.1) benign(0.212) TCGA-AA-A00N-01 13 50206602 50206602 C T ARL11 3'UTR 0.16 TCGA-AA-A00N-01 13 50592051 50592051 T C TRIM13 3'Flank 0.31 TCGA-AA-A00N-01 13 50592266 50592266 T C TRIM13 3'Flank 0.16 TCGA-AA-A00N-01 13 50594589 50594589 G T KCNRG Nonstop_Mutation p.*273Lext*51 0.23 TCGA-AA-A00N-01 13 51819451 51819451 G A FAM124A Missense_Mutation p.G35E 0.27 tolerated_low_confidence(1) benign(0) TCGA-AA-A00N-01 13 51826163 51826163 C A FAM124A Missense_Mutation p.F256L 0.35 tolerated(0.55) probably_damaging(0.999) TCGA-AA-A00N-01 13 51950264 51950264 C T INTS6 Missense_Mutation p.R550Q 0.17 tolerated(0.08) benign(0.096) TCGA-AA-A00N-01 13 52639688 52639688 G A NEK5 Missense_Mutation p.A661V 0.23 tolerated(0.16) benign(0.039) TCGA-AA-A00N-01 13 52661488 52661488 C T NEK5 Missense_Mutation p.E460K 0.23 tolerated(0.29) benign(0.013) TCGA-AA-A00N-01 13 52715169 52715169 T C NEK3 Intron 0.31 TCGA-AA-A00N-01 13 52854011 52854011 A G RP11-248G5.8 RNA 0.12 TCGA-AA-A00N-01 13 53047983 53047983 T G CKAP2 Silent p.S523S 0.22 TCGA-AA-A00N-01 13 53282706 53282706 C T LECT1 Missense_Mutation p.D252N 0.23 tolerated(0.48) benign(0.162) TCGA-AA-A00N-01 13 53422222 53422222 C T PCDH8 Missense_Mutation p.R117Q 0.23 tolerated(0.45) benign(0.05) TCGA-AA-A00N-01 13 53624719 53624719 G A OLFM4 Missense_Mutation p.R449K 0.17 tolerated(0.19) benign(0.06) TCGA-AA-A00N-01 13 67477651 67477651 T G PCDH9 Missense_Mutation p.E1041D 0.19 tolerated(0.62) benign(0.001) TCGA-AA-A00N-01 13 76179901 76179901 G A UCHL3 Missense_Mutation p.D216N 0.11 deleterious(0) possibly_damaging(0.726) TCGA-AA-A00N-01 13 76382089 76382089 T G LMO7 Missense_Mutation p.F324C 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 13 76393554 76393554 G A LMO7 Missense_Mutation p.R464Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 13 77581800 77581800 C T FBXL3 Missense_Mutation p.R256H 0.14 tolerated(0.07) probably_damaging(0.98) TCGA-AA-A00N-01 13 77642939 77642939 G A MYCBP2 Missense_Mutation p.R3940C 0.29 probably_damaging(0.992) TCGA-AA-A00N-01 13 77862352 77862352 C T MYCBP2 Missense_Mutation p.E142K 0.25 benign(0.002) TCGA-AA-A00N-01 13 78492700 78492700 C T EDNRB Silent p.P93P 0.23 TCGA-AA-A00N-01 13 84455409 84455409 G A SLITRK1 Silent p.F78F 0.11 TCGA-AA-A00N-01 13 86368620 86368620 G A SLITRK6 Missense_Mutation p.A675V 0.20 deleterious(0.02) benign(0.046) TCGA-AA-A00N-01 13 92345783 92345783 G A GPC5 Missense_Mutation p.R223H 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-AA-A00N-01 13 94197639 94197639 G A GPC6 Missense_Mutation p.R95H 0.06 deleterious(0.04) possibly_damaging(0.9) TCGA-AA-A00N-01 13 95095699 95095699 C T DCT Missense_Mutation p.D491N 0.16 tolerated(0.06) benign(0.011) TCGA-AA-A00N-01 13 95131277 95131277 C T DCT Missense_Mutation p.R78Q 0.08 tolerated(0.3) benign(0.063) TCGA-AA-A00N-01 13 95271455 95271455 G A GPR180 Missense_Mutation p.C186Y 0.20 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 13 95861803 95861803 C T ABCC4 Missense_Mutation p.A224T 0.38 tolerated(0.21) benign(0.035) TCGA-AA-A00N-01 13 96230311 96230311 C T CLDN10 3'UTR 0.19 TCGA-AA-A00N-01 13 96251640 96251640 C A DZIP1 Nonsense_Mutation p.E506* 0.20 TCGA-AA-A00N-01 13 96277040 96277040 C A DZIP1 Missense_Mutation p.K318N 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 13 97640056 97640056 T G OXGR1 5'UTR 0.21 TCGA-AA-A00N-01 13 98655155 98655155 G A IPO5 Missense_Mutation p.G472D 0.19 tolerated(0.42) benign(0.004) TCGA-AA-A00N-01 13 99063076 99063076 C T FARP1 Missense_Mutation p.S564L 0.21 deleterious(0.04) benign(0.104) TCGA-AA-A00N-01 13 99118668 99118668 C T STK24 Missense_Mutation p.E261K 0.16 deleterious(0) probably_damaging(0.961) TCGA-AA-A00N-01 14 100126636 100126636 C T HHIPL1 Silent p.F465F 0.13 TCGA-AA-A00N-01 14 100377898 100377898 A G EML1 Silent p.K512K 0.05 TCGA-AA-A00N-01 14 100380994 100380994 A G EML1 Missense_Mutation p.D590G 0.30 deleterious(0.02) benign(0.159) TCGA-AA-A00N-01 14 101318725 101318725 T C MEG3 Intron 0.26 TCGA-AA-A00N-01 14 101348353 101348353 G A RTL1 Missense_Mutation p.L925F 0.19 deleterious(0.02) probably_damaging(0.976) TCGA-AA-A00N-01 14 101348687 101348687 G A RTL1 Silent p.I813I 0.21 TCGA-AA-A00N-01 14 101349857 101349857 G A RTL1 Silent p.V423V 0.30 TCGA-AA-A00N-01 14 101493520 101493520 A C MIR329-2 RNA 0.26 TCGA-AA-A00N-01 14 101500125 101500125 C T MIR495 RNA 0.11 TCGA-AA-A00N-01 14 101512840 101512840 C T MIR487B RNA 0.17 TCGA-AA-A00N-01 14 101513688 101513688 T C MIR539 RNA 0.05 TCGA-AA-A00N-01 14 101531708 101531708 C T MIR409 RNA 0.24 TCGA-AA-A00N-01 14 101531862 101531862 G A MIR412 RNA 0.23 TCGA-AA-A00N-01 14 102449506 102449506 A C DYNC1H1 Missense_Mutation p.K371T 0.17 possibly_damaging(0.716) TCGA-AA-A00N-01 14 102453892 102453892 G T DYNC1H1 Missense_Mutation p.V881F 0.17 benign(0.128) TCGA-AA-A00N-01 14 102843130 102843130 G A TECPR2 Silent p.P24P 0.20 TCGA-AA-A00N-01 14 102898297 102898297 G A TECPR2 Missense_Mutation p.D417N 0.12 tolerated(0.11) probably_damaging(0.931) TCGA-AA-A00N-01 14 103447198 103447198 C T CDC42BPB Missense_Mutation p.R351Q 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A00N-01 14 103803146 103803146 T G EIF5 Missense_Mutation p.F96C 0.26 deleterious(0.02) possibly_damaging(0.704) TCGA-AA-A00N-01 14 103806856 103806856 A C EIF5 Missense_Mutation p.E388D 0.17 tolerated(0.11) benign(0.072) TCGA-AA-A00N-01 14 103933480 103933480 C T MARK3 Silent p.Y354Y 0.14 TCGA-AA-A00N-01 14 104056532 104056532 G A APOPT1 Missense_Mutation p.R177H 0.21 deleterious(0.03) benign(0.192) TCGA-AA-A00N-01 14 104561957 104561957 G T ASPG Missense_Mutation p.E131D 0.14 deleterious(0.02) benign(0.269) TCGA-AA-A00N-01 14 104641567 104641567 C T KIF26A Silent p.F814F 0.13 TCGA-AA-A00N-01 14 105404600 105404600 T C AHNAK2 Missense_Mutation p.T5730A 0.27 benign(0.229) TCGA-AA-A00N-01 14 105408032 105408032 C T AHNAK2 Missense_Mutation p.D4586N 0.31 benign(0.211) TCGA-AA-A00N-01 14 105408302 105408302 C T AHNAK2 Missense_Mutation p.D4496N 0.28 possibly_damaging(0.786) TCGA-AA-A00N-01 14 105408642 105408642 C T AHNAK2 Silent p.P4382P 0.15 TCGA-AA-A00N-01 14 105412824 105412824 G A AHNAK2 Silent p.F2988F 0.25 TCGA-AA-A00N-01 14 105413390 105413390 A G AHNAK2 Missense_Mutation p.S2800P 0.16 probably_damaging(0.972) TCGA-AA-A00N-01 14 105639417 105639417 C T NUDT14 Missense_Mutation p.V204I 0.18 tolerated(0.05) benign(0.149) TCGA-AA-A00N-01 14 106321874 106321874 G A IGHM Silent p.R120R 0.31 TCGA-AA-A00N-01 14 106963186 106963186 C A IGHV1-45 Missense_Mutation p.K32N 0.14 deleterious(0.01) benign(0.376) TCGA-AA-A00N-01 14 107170189 107170189 C T IGHV1-69 Silent p.K31K 0.08 TCGA-AA-A00N-01 14 20389116 20389116 G A OR4K5 Silent p.S117S 0.15 TCGA-AA-A00N-01 14 20403976 20403976 T G OR4K1 Missense_Mutation p.F51V 0.13 tolerated(0.29) benign(0) TCGA-AA-A00N-01 14 20404052 20404052 T C OR4K1 Missense_Mutation p.F76S 0.16 deleterious(0.05) benign(0.408) TCGA-AA-A00N-01 14 20665972 20665972 C T OR11G2 Nonsense_Mutation p.R160* 0.25 TCGA-AA-A00N-01 14 20897765 20897765 G T KLHL33 Missense_Mutation p.F315L 0.11 tolerated(0.05) possibly_damaging(0.847) TCGA-AA-A00N-01 14 21052172 21052172 T C RNASE11 Silent p.E154E 0.26 TCGA-AA-A00N-01 14 21250134 21250134 C T RNASE6 Silent p.C92C 0.07 TCGA-AA-A00N-01 14 21960729 21960729 T C TOX4 Silent p.P318P 0.31 TCGA-AA-A00N-01 14 22539392 22539392 C T TRAV22 Silent p.V84V 0.30 TCGA-AA-A00N-01 14 23016496 23016496 C T TRAC Silent p.S17S 0.28 TCGA-AA-A00N-01 14 23072381 23072381 G A ABHD4 Missense_Mutation p.D67N 0.22 tolerated(0.57) benign(0.001) TCGA-AA-A00N-01 14 23072967 23072967 G A ABHD4 Missense_Mutation p.R208Q 0.27 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 14 23345513 23345513 C T LRP10 Silent p.C452C 0.08 TCGA-AA-A00N-01 14 23354217 23354217 G T REM2 Missense_Mutation p.E146D 0.09 tolerated(0.24) probably_damaging(0.983) TCGA-AA-A00N-01 14 23567408 23567408 G T C14orf119 3'UTR 0.17 TCGA-AA-A00N-01 14 23817127 23817127 T G SLC22A17 Missense_Mutation p.K306T 0.15 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 14 23817424 23817424 G A SLC22A17 Nonsense_Mutation p.R262* 0.28 TCGA-AA-A00N-01 14 23890173 23890173 C T MYH7 Silent p.E1110E 0.35 TCGA-AA-A00N-01 14 23897746 23897746 C T MYH7 Missense_Mutation p.G514D 0.19 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 14 23902831 23902831 G T MYH7 Silent p.V37V 0.28 TCGA-AA-A00N-01 14 24538001 24538001 G T LRRC16B Missense_Mutation p.D1270Y 0.24 deleterious_low_confidence(0.04) unknown(0) TCGA-AA-A00N-01 14 24543919 24543919 T C CPNE6 Missense_Mutation p.V196A 0.40 deleterious(0) possibly_damaging(0.852) TCGA-AA-A00N-01 14 24606746 24606746 A G PSME1 Silent p.E88E 0.20 TCGA-AA-A00N-01 14 24632299 24632299 G A IRF9 Missense_Mutation p.R102H 0.29 tolerated(0.61) benign(0.007) TCGA-AA-A00N-01 14 24675283 24675283 G A TSSK4 Missense_Mutation p.A52T 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 14 24718499 24718499 C G TGM1 3'UTR 0.34 TCGA-AA-A00N-01 14 24737771 24737771 G A RABGGTA Missense_Mutation p.R319C 0.21 tolerated(0.09) benign(0.003) TCGA-AA-A00N-01 14 24806395 24806395 G A RIPK3 Missense_Mutation p.S391L 0.31 deleterious(0.01) possibly_damaging(0.77) TCGA-AA-A00N-01 14 24886071 24886071 C T NYNRIN Missense_Mutation p.R1706W 0.27 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-AA-A00N-01 14 24911326 24911326 A C SDR39U1 Intron 0.08 TCGA-AA-A00N-01 14 29237174 29237174 G A FOXG1 Missense_Mutation p.R230H 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 14 29237632 29237632 G A FOXG1 Missense_Mutation p.A383T 0.22 deleterious(0.01) benign(0.048) TCGA-AA-A00N-01 14 30194878 30194878 G A PRKD1 Silent p.F89F 0.24 TCGA-AA-A00N-01 14 31061581 31061581 G A G2E3 Missense_Mutation p.R97Q 0.26 tolerated(0.28) benign(0.028) TCGA-AA-A00N-01 14 31204959 31204959 T G SCFD1 3'UTR 0.33 TCGA-AA-A00N-01 14 31562123 31562123 A C AP4S1 Nonstop_Mutation p.*103Yext*3 0.20 TCGA-AA-A00N-01 14 33015167 33015167 A C AKAP6 Missense_Mutation p.K436N 0.29 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 14 33243093 33243093 G T AKAP6 Missense_Mutation p.K1194N 0.20 tolerated(0.07) benign(0.282) TCGA-AA-A00N-01 14 33291162 33291162 C A AKAP6 Nonsense_Mutation p.C1381* 0.09 TCGA-AA-A00N-01 14 33292277 33292277 G A AKAP6 Missense_Mutation p.S1753N 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-AA-A00N-01 14 35331514 35331514 C T BAZ1A Missense_Mutation p.R43Q 0.22 deleterious(0) possibly_damaging(0.553) TCGA-AA-A00N-01 14 35568526 35568526 G T PPP2R3C Missense_Mutation p.S213Y 0.23 deleterious(0) probably_damaging(0.967) TCGA-AA-A00N-01 14 36041773 36041773 T G RALGAPA1 Missense_Mutation p.K1948T 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 14 36840964 36840964 A C DPPA3P2 RNA 0.21 TCGA-AA-A00N-01 14 36841102 36841102 T G DPPA3P2 RNA 0.11 TCGA-AA-A00N-01 14 36946257 36946257 G A SFTA3 Silent p.C60C 0.08 TCGA-AA-A00N-01 14 37153043 37153043 T C SLC25A21 Silent p.R276R 0.15 TCGA-AA-A00N-01 14 38679111 38679111 G A SSTR1 Missense_Mutation p.V173M 0.18 tolerated(0.05) possibly_damaging(0.754) TCGA-AA-A00N-01 14 38681780 38681780 T G SSTR1 3'UTR 0.22 TCGA-AA-A00N-01 14 39605751 39605751 C T GEMIN2 3'UTR 0.26 TCGA-AA-A00N-01 14 44974876 44974876 C A FSCB Nonsense_Mutation p.E439* 0.21 TCGA-AA-A00N-01 14 44975440 44975440 T G FSCB Missense_Mutation p.K251Q 0.18 tolerated(0.18) possibly_damaging(0.767) TCGA-AA-A00N-01 14 44975451 44975451 G T FSCB Missense_Mutation p.S247Y 0.18 tolerated(0.07) possibly_damaging(0.547) TCGA-AA-A00N-01 14 44976157 44976157 C A FSCB Nonsense_Mutation p.E12* 0.19 TCGA-AA-A00N-01 14 45369824 45369824 C A C14orf28 Missense_Mutation p.F62L 0.26 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-AA-A00N-01 14 45432459 45432459 G A FAM179B Missense_Mutation p.A279T 0.10 tolerated_low_confidence(0.6) benign(0.015) TCGA-AA-A00N-01 14 45432462 45432462 C T FAM179B Missense_Mutation p.L280F 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A00N-01 14 45605220 45605220 G A FANCM 5'UTR 0.11 TCGA-AA-A00N-01 14 45645784 45645784 C T FANCM Missense_Mutation p.S1276L 0.24 tolerated(0.53) benign(0.006) TCGA-AA-A00N-01 14 47120507 47120507 C T RPL10L Missense_Mutation p.E145K 0.08 tolerated(1) benign(0) TCGA-AA-A00N-01 14 47120968 47120968 G A RPL10L 5'UTR 0.26 TCGA-AA-A00N-01 14 47504288 47504288 T C MDGA2 Missense_Mutation p.Y582C 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 14 47687253 47687253 G A MDGA2 Missense_Mutation p.A189V 0.19 deleterious(0.02) possibly_damaging(0.702) TCGA-AA-A00N-01 14 50244959 50244959 C T KLHDC2 Silent p.F177F 0.18 TCGA-AA-A00N-01 14 50295465 50295465 C T NEMF Silent p.E431E 0.18 TCGA-AA-A00N-01 14 50307552 50307552 T G NEMF Silent p.V130V 0.24 TCGA-AA-A00N-01 14 50600866 50600866 C T SOS2 Missense_Mutation p.R1017Q 0.21 deleterious(0) possibly_damaging(0.859) TCGA-AA-A00N-01 14 50808899 50808899 C T CDKL1 Silent p.T136T 0.15 TCGA-AA-A00N-01 14 50877265 50877265 G A CDKL1 RNA 0.19 TCGA-AA-A00N-01 14 51372218 51372218 G A PYGL Silent p.F812F 0.22 TCGA-AA-A00N-01 14 51560938 51560938 G A TRIM9 Silent p.Y240Y 0.12 TCGA-AA-A00N-01 14 52470942 52470942 C A C14orf166 Missense_Mutation p.L188I 0.25 tolerated(0.13) benign(0.211) TCGA-AA-A00N-01 14 53224043 53224043 G T STYX Nonsense_Mutation p.E104* 0.26 TCGA-AA-A00N-01 14 53324977 53324977 G T FERMT2 3'UTR 0.25 TCGA-AA-A00N-01 14 53529767 53529767 G A DDHD1 Missense_Mutation p.R554W 0.15 deleterious(0) possibly_damaging(0.462) TCGA-AA-A00N-01 14 55467349 55467349 T A WDHD1 Nonsense_Mutation p.K272* 0.19 TCGA-AA-A00N-01 14 55475381 55475381 C T WDHD1 Missense_Mutation p.R133Q 0.18 deleterious(0.02) probably_damaging(0.941) TCGA-AA-A00N-01 14 55512597 55512597 C A SOCS4 3'UTR 0.24 TCGA-AA-A00N-01 14 55819980 55819980 G A FBXO34 3'UTR 0.18 TCGA-AA-A00N-01 14 56139399 56139399 G A KTN1 Missense_Mutation p.E1195K 0.21 deleterious(0.04) benign(0.089) TCGA-AA-A00N-01 14 56763463 56763463 G A PELI2 Missense_Mutation p.R281Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 14 57082687 57082687 G A TMEM260 Missense_Mutation p.E295K 0.24 tolerated(0.11) benign(0.096) TCGA-AA-A00N-01 14 57675371 57675371 G A EXOC5 Missense_Mutation p.R695C 0.21 deleterious(0.02) probably_damaging(0.945) TCGA-AA-A00N-01 14 58832908 58832908 G A ARID4A Silent p.P1161P 0.20 TCGA-AA-A00N-01 14 58910815 58910815 C T KIAA0586 Silent p.H296H 0.21 TCGA-AA-A00N-01 14 58924559 58924559 C T KIAA0586 Missense_Mutation p.S535F 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 14 59105240 59105240 A G DACT1 Missense_Mutation p.N107S 0.12 tolerated(0.07) possibly_damaging(0.845) TCGA-AA-A00N-01 14 59112605 59112605 G T DACT1 Nonsense_Mutation p.E422* 0.31 TCGA-AA-A00N-01 14 59789924 59789924 G A DAAM1 Missense_Mutation p.S252N 0.10 tolerated(0.21) unknown(0) TCGA-AA-A00N-01 14 59814276 59814276 G A DAAM1 Missense_Mutation p.E709K 0.06 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A00N-01 14 60600972 60600972 A C PCNXL4 3'UTR 0.12 TCGA-AA-A00N-01 14 60976364 60976364 C T SIX6 Missense_Mutation p.S83L 0.23 deleterious(0.03) possibly_damaging(0.574) TCGA-AA-A00N-01 14 60976365 60976365 G A SIX6 Silent p.S83S 0.08 TCGA-AA-A00N-01 14 61180088 61180088 C T SIX4 3'UTR 0.19 TCGA-AA-A00N-01 14 61442541 61442541 C A TRMT5 Nonsense_Mutation p.E366* 0.21 TCGA-AA-A00N-01 14 61445981 61445981 C T TRMT5 Missense_Mutation p.R212Q 0.20 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 14 61746927 61746927 C A TMEM30B Missense_Mutation p.K313N 0.22 deleterious(0) probably_damaging(0.978) TCGA-AA-A00N-01 14 61789180 61789180 T C PRKCH Missense_Mutation p.W121R 0.31 deleterious(0) benign(0.243) TCGA-AA-A00N-01 14 62244826 62244826 G T SNAPC1 Nonsense_Mutation p.E244* 0.21 TCGA-AA-A00N-01 14 62245586 62245586 A G SNAPC1 Silent p.S261S 0.27 TCGA-AA-A00N-01 14 63757598 63757598 C T RHOJ Silent p.I167I 0.21 TCGA-AA-A00N-01 14 64421609 64421609 A C SYNE2 Missense_Mutation p.I255L 0.08 probably_damaging(0.984) TCGA-AA-A00N-01 14 64447443 64447443 G T SYNE2 Missense_Mutation p.K547N 0.26 benign(0.037) TCGA-AA-A00N-01 14 64494488 64494488 G A SYNE2 Missense_Mutation p.E2231K 0.20 possibly_damaging(0.555) TCGA-AA-A00N-01 14 64518863 64518863 G T SYNE2 Missense_Mutation p.K2744N 0.37 benign(0.023) TCGA-AA-A00N-01 14 64519940 64519940 G T SYNE2 Missense_Mutation p.K3103N 0.21 possibly_damaging(0.56) TCGA-AA-A00N-01 14 64644190 64644190 G T SYNE2 Nonsense_Mutation p.E5849* 0.07 TCGA-AA-A00N-01 14 64687222 64687222 T G SYNE2 Missense_Mutation p.F6643C 0.09 benign(0.013) TCGA-AA-A00N-01 14 64941210 64941210 T G AKAP5 3'UTR 0.08 TCGA-AA-A00N-01 14 65007804 65007804 C T HSPA2 Silent p.F79F 0.18 TCGA-AA-A00N-01 14 67859936 67859936 C T PLEK2 Missense_Mutation p.D138N 0.23 deleterious(0.03) benign(0.028) TCGA-AA-A00N-01 14 68108926 68108926 G T ARG2 Missense_Mutation p.D70Y 0.14 deleterious(0) probably_damaging(0.982) TCGA-AA-A00N-01 14 68260351 68260351 G A ZFYVE26 Missense_Mutation p.R843C 0.21 deleterious(0) probably_damaging(0.942) TCGA-AA-A00N-01 14 68268861 68268861 T C ZFYVE26 Missense_Mutation p.K525R 0.18 tolerated(0.54) benign(0.001) TCGA-AA-A00N-01 14 69619631 69619631 C T DCAF5 Missense_Mutation p.G22D 0.12 tolerated(0.13) possibly_damaging(0.462) TCGA-AA-A00N-01 14 69695575 69695575 A C EXD2 Missense_Mutation p.M126L 0.21 tolerated(0.57) benign(0.003) TCGA-AA-A00N-01 14 70477483 70477483 C T SMOC1 Missense_Mutation p.S226L 0.11 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 14 70633796 70633796 G A SLC8A3 Silent p.F448F 0.50 TCGA-AA-A00N-01 14 70925023 70925023 G T ADAM21 Missense_Mutation p.M269I 0.19 tolerated(0.65) benign(0) TCGA-AA-A00N-01 14 70925121 70925121 C A ADAM21 Nonsense_Mutation p.S302* 0.10 TCGA-AA-A00N-01 14 70990284 70990284 C T ADAM20 Silent p.P447P 0.19 TCGA-AA-A00N-01 14 70991510 70991510 C A ADAM20 Missense_Mutation p.A39S 0.08 deleterious_low_confidence(0) benign(0.026) TCGA-AA-A00N-01 14 72056032 72056032 C T SIPA1L1 Silent p.I481I 0.30 TCGA-AA-A00N-01 14 72056071 72056071 A C SIPA1L1 Missense_Mutation p.K494N 0.33 deleterious(0.03) possibly_damaging(0.617) TCGA-AA-A00N-01 14 72152162 72152162 G A SIPA1L1 Missense_Mutation p.R1063Q 0.28 deleterious(0) benign(0.062) TCGA-AA-A00N-01 14 72985123 72985123 G T RGS6 Nonsense_Mutation p.E386* 0.10 TCGA-AA-A00N-01 14 73659540 73659540 C T PSEN1 Missense_Mutation p.A246V 0.17 tolerated(0.15) possibly_damaging(0.61) TCGA-AA-A00N-01 14 73727932 73727932 C A PAPLN Silent p.G698G 0.14 TCGA-AA-A00N-01 14 74004386 74004386 G T ACOT1 Missense_Mutation p.E87D 0.21 tolerated(0.55) benign(0) TCGA-AA-A00N-01 14 74364943 74364943 G T ZNF410 Missense_Mutation p.K203N 0.27 deleterious(0) benign(0.437) TCGA-AA-A00N-01 14 74424903 74424903 C T COQ6 Missense_Mutation p.P179S 0.21 tolerated(0.29) benign(0.002) TCGA-AA-A00N-01 14 74824067 74824067 G A VRTN Missense_Mutation p.R194H 0.19 tolerated(0.52) probably_damaging(0.945) TCGA-AA-A00N-01 14 74976453 74976453 G A LTBP2 Silent p.D1087D 0.25 TCGA-AA-A00N-01 14 74988618 74988618 A G LTBP2 Silent p.C928C 0.16 TCGA-AA-A00N-01 14 75052779 75052779 C T LTBP2 Missense_Mutation p.R203H 0.18 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 14 75388144 75388144 C T RPS6KL1 Missense_Mutation p.R34H 0.17 tolerated(0.07) benign(0.035) TCGA-AA-A00N-01 14 75538313 75538313 C T ZC2HC1C Missense_Mutation p.S346L 0.28 tolerated(0.16) benign(0.013) TCGA-AA-A00N-01 14 75557978 75557978 G A NEK9 Nonsense_Mutation p.R813* 0.36 TCGA-AA-A00N-01 14 76121263 76121263 G A C14orf1 Missense_Mutation p.R64C 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 14 76488735 76488735 G A IFT43 Silent p.S71S 0.18 TCGA-AA-A00N-01 14 76525585 76525585 G T IFT43 Intron 0.04 TCGA-AA-A00N-01 14 76542941 76542941 G A IFT43 Missense_Mutation p.G73S 0.23 tolerated(0.95) benign(0.002) TCGA-AA-A00N-01 14 76620661 76620661 C T GPATCH2L Intron 0.16 TCGA-AA-A00N-01 14 76964709 76964709 G A ESRRB Missense_Mutation p.A404T 0.25 tolerated(0.52) benign(0.016) TCGA-AA-A00N-01 14 76967135 76967135 G A ESRRB 3'UTR 0.15 TCGA-AA-A00N-01 14 77242433 77242433 C T VASH1 Silent p.F243F 0.33 TCGA-AA-A00N-01 14 77809604 77809604 A G TMED8 Missense_Mutation p.V226A 0.18 tolerated(0.18) probably_damaging(0.999) TCGA-AA-A00N-01 14 77904167 77904167 G T VIPAS39 Missense_Mutation p.L274I 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-AA-A00N-01 14 77984509 77984509 C T SPTLC2 Missense_Mutation p.A481T 0.07 deleterious(0.02) benign(0.298) TCGA-AA-A00N-01 14 79175584 79175584 C T NRXN3 Missense_Mutation p.R43C 0.20 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 14 79175641 79175641 G A NRXN3 Missense_Mutation p.E62K 0.17 tolerated(0.26) possibly_damaging(0.683) TCGA-AA-A00N-01 14 80677848 80677848 G A DIO2 5'Flank 0.19 TCGA-AA-A00N-01 14 81366324 81366324 C T CEP128 Missense_Mutation p.R177H 0.12 deleterious(0.02) benign(0.394) TCGA-AA-A00N-01 14 81606161 81606161 T G TSHR Silent p.L277L 0.22 TCGA-AA-A00N-01 14 81609503 81609503 C T TSHR Silent p.G367G 0.22 TCGA-AA-A00N-01 14 81862267 81862267 G A STON2 Missense_Mutation p.S115F 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.617) TCGA-AA-A00N-01 14 86087985 86087985 G A FLRT2 Missense_Mutation p.D43N 0.22 deleterious(0) possibly_damaging(0.826) TCGA-AA-A00N-01 14 86090146 86090146 G A FLRT2 3'UTR 0.21 TCGA-AA-A00N-01 14 86090765 86090765 T G FLRT2 3'UTR 0.06 TCGA-AA-A00N-01 14 86093266 86093266 G A FLRT2 3'UTR 0.09 TCGA-AA-A00N-01 14 88477106 88477106 C T GPR65 5'UTR 0.14 TCGA-AA-A00N-01 14 88477965 88477965 C T GPR65 Silent p.F258F 0.18 TCGA-AA-A00N-01 14 88651869 88651869 T C KCNK10 3'UTR 0.17 TCGA-AA-A00N-01 14 88792776 88792776 G T KCNK10 5'Flank 0.17 TCGA-AA-A00N-01 14 89131752 89131752 G A EML5 Missense_Mutation p.A1069V 0.06 tolerated(0.07) benign(0.261) TCGA-AA-A00N-01 14 89181294 89181295 - A EML5 Frame_Shift_Ins p.Y478Lfs*2 0.19 TCGA-AA-A00N-01 14 90755320 90755320 C A NRDE2 Missense_Mutation p.R800I 0.08 deleterious(0) possibly_damaging(0.688) TCGA-AA-A00N-01 14 90769176 90769176 C T NRDE2 Silent p.S433S 0.24 TCGA-AA-A00N-01 14 91413793 91413793 C T RPS6KA5 Missense_Mutation p.E166K 0.17 deleterious(0) probably_damaging(0.969) TCGA-AA-A00N-01 14 91444844 91444844 C T RPS6KA5 Missense_Mutation p.R67H 0.05 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 14 92174488 92174488 G A CATSPERB Nonsense_Mutation p.R155* 0.12 TCGA-AA-A00N-01 14 92251562 92251562 A C TC2N Missense_Mutation p.F436V 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-AA-A00N-01 14 92266622 92266622 C A TC2N Intron 0.22 TCGA-AA-A00N-01 14 92349413 92349413 G A FBLN5 Silent p.D249D 0.14 TCGA-AA-A00N-01 14 92470812 92470812 C A TRIP11 Missense_Mutation p.D1170Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 14 93125602 93125602 C T RIN3 Missense_Mutation p.S708L 0.33 deleterious(0) possibly_damaging(0.862) TCGA-AA-A00N-01 14 94089139 94089139 G A UNC79 Missense_Mutation p.D1677N 0.25 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AA-A00N-01 14 94109928 94109928 G T UNC79 Nonsense_Mutation p.E1839* 0.15 TCGA-AA-A00N-01 14 94120314 94120314 G A UNC79 Silent p.S1937S 0.25 TCGA-AA-A00N-01 14 94139703 94139703 G T UNC79 Missense_Mutation p.D2077Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 14 94394670 94394670 C T FAM181A Silent p.F75F 0.48 TCGA-AA-A00N-01 14 94674876 94674876 G A PPP4R4 Silent p.T89T 0.18 TCGA-AA-A00N-01 14 94700960 94700960 C T PPP4R4 Nonsense_Mutation p.R229* 0.24 TCGA-AA-A00N-01 14 94750365 94750365 G T SERPINA10 Silent p.I424I 0.07 TCGA-AA-A00N-01 14 94844610 94844610 G A SERPINA1 3'UTR 0.10 TCGA-AA-A00N-01 14 94849403 94849403 C T SERPINA1 Missense_Mutation p.A58T 0.08 tolerated(0.13) benign(0.277) TCGA-AA-A00N-01 14 94914771 94914771 T C SERPINA11 Missense_Mutation p.D114G 0.16 deleterious(0.01) possibly_damaging(0.574) TCGA-AA-A00N-01 14 95054239 95054239 G A SERPINA5 Silent p.T180T 0.16 TCGA-AA-A00N-01 14 95679561 95679561 C T CLMN Silent p.T201T 0.19 TCGA-AA-A00N-01 14 95942060 95942060 C T SYNE3 Silent p.T33T 0.22 TCGA-AA-A00N-01 14 96137757 96137757 G A TCL6 RNA 0.31 TCGA-AA-A00N-01 14 96180332 96180332 G A TCL1A Silent p.F24F 0.12 TCGA-AA-A00N-01 14 96791995 96791995 C A ATG2B Nonsense_Mutation p.E810* 0.16 TCGA-AA-A00N-01 14 96875238 96875238 C T AK7 Missense_Mutation p.S153L 0.21 deleterious(0) probably_damaging(0.949) TCGA-AA-A00N-01 14 96924468 96924468 G A AK7 Missense_Mutation p.E426K 0.30 tolerated(0.12) benign(0.104) TCGA-AA-A00N-01 14 96953302 96953302 G A AK7 Missense_Mutation p.R681K 0.14 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 14 99640466 99640466 C T BCL11B 3'UTR 0.15 TCGA-AA-A00N-01 14 99925463 99925463 T G SETD3 Missense_Mutation p.K135N 0.13 tolerated(0.09) possibly_damaging(0.894) TCGA-AA-A00N-01 15 100185823 100185823 C T MEF2A Missense_Mutation p.L38F 0.15 deleterious(0) probably_damaging(0.943) TCGA-AA-A00N-01 15 100211641 100211641 T G MEF2A Intron 0.18 TCGA-AA-A00N-01 15 101434155 101434155 G A ALDH1A3 Intron 0.12 TCGA-AA-A00N-01 15 101717535 101717535 A T CHSY1 3'UTR 0.18 TCGA-AA-A00N-01 15 102496013 102496013 A G FAM138E RNA 0.18 TCGA-AA-A00N-01 15 20643943 20643943 C A HERC2P3 RNA 0.12 TCGA-AA-A00N-01 15 20666586 20666586 C A HERC2P3 RNA 0.15 TCGA-AA-A00N-01 15 22383256 22383256 T G OR4N4 Missense_Mutation p.F262V 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 15 22473098 22473098 C T IGHV4OR15-8 Missense_Mutation p.R58H 0.12 deleterious(0.02) probably_damaging(0.981) TCGA-AA-A00N-01 15 22956230 22956230 G A CYFIP1 Intron 0.29 TCGA-AA-A00N-01 15 23048918 23048918 C T NIPA1 Missense_Mutation p.V301I 0.30 tolerated(1) benign(0.133) TCGA-AA-A00N-01 15 23889902 23889902 G A MAGEL2 Silent p.V393V 0.31 TCGA-AA-A00N-01 15 24921619 24921619 G T NPAP1 Missense_Mutation p.R202I 0.17 tolerated(0.13) benign(0.001) TCGA-AA-A00N-01 15 24922383 24922383 A C NPAP1 Missense_Mutation p.T457P 0.20 deleterious(0.04) possibly_damaging(0.864) TCGA-AA-A00N-01 15 24923027 24923027 C T NPAP1 Silent p.P671P 0.18 TCGA-AA-A00N-01 15 24925014 24925014 G T NPAP1 3'UTR 0.08 TCGA-AA-A00N-01 15 24927611 24927611 T G NPAP1 3'UTR 0.30 TCGA-AA-A00N-01 15 25947244 25947244 G A ATP10A Missense_Mutation p.A860V 0.21 deleterious(0.02) benign(0.158) TCGA-AA-A00N-01 15 26107961 26107961 C T ATP10A Missense_Mutation p.A95T 0.09 tolerated(0.06) possibly_damaging(0.581) TCGA-AA-A00N-01 15 27128345 27128345 G A GABRA5 Missense_Mutation p.V81I 0.26 tolerated(0.06) probably_damaging(0.997) TCGA-AA-A00N-01 15 27128356 27128356 C T GABRA5 Silent p.F84F 0.08 TCGA-AA-A00N-01 15 27772774 27772774 C T GABRG3 Missense_Mutation p.S354L 0.08 tolerated(0.26) benign(0.004) TCGA-AA-A00N-01 15 28441425 28441425 A G HERC2 Silent p.C2732C 0.17 TCGA-AA-A00N-01 15 29993841 29993841 G A TJP1 Silent p.L1735L 0.26 TCGA-AA-A00N-01 15 30065521 30065521 G A TJP1 Nonsense_Mutation p.R42* 0.25 TCGA-AA-A00N-01 15 31206141 31206141 C T FAN1 Missense_Mutation p.S553L 0.32 deleterious(0) possibly_damaging(0.755) TCGA-AA-A00N-01 15 31221527 31221527 C T FAN1 Missense_Mutation p.T905M 0.15 deleterious(0.01) probably_damaging(0.914) TCGA-AA-A00N-01 15 31294541 31294541 A G TRPM1 Silent p.C1471C 0.22 TCGA-AA-A00N-01 15 31295003 31295003 G A TRPM1 Silent p.N1317N 0.25 TCGA-AA-A00N-01 15 31776839 31776839 G A OTUD7A Missense_Mutation p.S480L 0.05 deleterious(0.02) probably_damaging(0.986) TCGA-AA-A00N-01 15 32916598 32916598 C A ARHGAP11A Missense_Mutation p.F174L 0.04 deleterious(0.02) benign(0.12) TCGA-AA-A00N-01 15 33025621 33025621 C T GREM1 3'UTR 0.33 TCGA-AA-A00N-01 15 33358895 33358895 C T FMN1 Silent p.S397S 0.26 TCGA-AA-A00N-01 15 33945009 33945009 C T RYR3 Silent p.I1411I 0.13 TCGA-AA-A00N-01 15 33988555 33988555 G A RYR3 Silent p.A1999A 0.32 TCGA-AA-A00N-01 15 34040316 34040316 A C RYR3 Missense_Mutation p.E2664A 0.21 probably_damaging(0.969) TCGA-AA-A00N-01 15 34040439 34040439 G A RYR3 Missense_Mutation p.R2705Q 0.26 benign(0.008) TCGA-AA-A00N-01 15 34109136 34109136 G T RYR3 Nonsense_Mutation p.E3526* 0.12 TCGA-AA-A00N-01 15 34109138 34109138 G T RYR3 Missense_Mutation p.E3526D 0.12 benign(0.008) TCGA-AA-A00N-01 15 34111970 34111970 G A RYR3 Missense_Mutation p.D3574N 0.06 probably_damaging(0.922) TCGA-AA-A00N-01 15 34130256 34130256 C T RYR3 Silent p.F4025F 0.18 TCGA-AA-A00N-01 15 34133072 34133072 C T RYR3 Missense_Mutation p.S4342F 0.18 benign(0.232) TCGA-AA-A00N-01 15 34150104 34150104 G A RYR3 Missense_Mutation p.D4711N 0.24 possibly_damaging(0.813) TCGA-AA-A00N-01 15 34356587 34356587 C A CHRM5 3'UTR 0.29 TCGA-AA-A00N-01 15 34356905 34356905 T G CHRM5 3'UTR 0.05 TCGA-AA-A00N-01 15 34395336 34395336 C T PGBD4 Missense_Mutation p.R202W 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 15 35274315 35274315 A G ZNF770 Missense_Mutation p.S441P 0.24 tolerated(0.15) benign(0.003) TCGA-AA-A00N-01 15 35529612 35529612 C T ANP32AP1 RNA 0.07 TCGA-AA-A00N-01 15 37110049 37110049 C T CSNK1A1P1 RNA 0.17 TCGA-AA-A00N-01 15 37184320 37184320 A C MEIS2 3'UTR 0.17 TCGA-AA-A00N-01 15 37188856 37188856 G A MEIS2 Missense_Mutation p.P337S 0.14 deleterious(0.02) probably_damaging(0.927) TCGA-AA-A00N-01 15 38786739 38786739 A G RASGRP1 Silent p.D701D 0.19 TCGA-AA-A00N-01 15 39544364 39544364 C T C15orf54 Missense_Mutation p.H10Y 0.09 tolerated_low_confidence(0.27) possibly_damaging(0.818) TCGA-AA-A00N-01 15 40093252 40093252 A G GPR176 3'UTR 0.25 TCGA-AA-A00N-01 15 40099269 40099269 T G GPR176 Missense_Mutation p.K121N 0.08 deleterious(0.04) probably_damaging(0.99) TCGA-AA-A00N-01 15 40580914 40580914 C T PLCB2 3'UTR 0.20 TCGA-AA-A00N-01 15 40648629 40648629 C A PHGR1 3'UTR 0.19 TCGA-AA-A00N-01 15 40678618 40678618 C T KNSTRN Silent p.V120V 0.27 TCGA-AA-A00N-01 15 40685684 40685684 G A KNSTRN Silent p.K279K 0.15 TCGA-AA-A00N-01 15 40901081 40901081 C T CASC5 Nonsense_Mutation p.R58* 0.11 TCGA-AA-A00N-01 15 40943737 40943737 G T CASC5 Missense_Mutation p.R2120I 0.05 tolerated(0.09) benign(0.017) TCGA-AA-A00N-01 15 41099956 41099956 C T ZFYVE19 Missense_Mutation p.P57S 0.31 tolerated_low_confidence(0.65) benign(0) TCGA-AA-A00N-01 15 41108445 41108445 C A PPP1R14D Missense_Mutation p.K126N 0.20 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-AA-A00N-01 15 42041074 42041074 C T MGA Nonsense_Mutation p.R1818* 0.19 TCGA-AA-A00N-01 15 42110446 42110446 C A MAPKBP1 Missense_Mutation p.L685I 0.20 tolerated(0.98) benign(0.124) TCGA-AA-A00N-01 15 42135957 42135957 C T PLA2G4B Missense_Mutation p.A507V 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A00N-01 15 42276739 42276739 T G PLA2G4E Missense_Mutation p.N761H 0.06 tolerated(0.42) benign(0.004) TCGA-AA-A00N-01 15 42378416 42378416 G A PLA2G4D Missense_Mutation p.P128S 0.14 tolerated(0.33) benign(0.018) TCGA-AA-A00N-01 15 42465993 42465993 A C VPS39 Missense_Mutation p.L340V 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-AA-A00N-01 15 42619624 42619624 C T GANC Missense_Mutation p.A495V 0.18 possibly_damaging(0.673) TCGA-AA-A00N-01 15 42740764 42740764 G A ZNF106 Nonsense_Mutation p.R858* 0.18 TCGA-AA-A00N-01 15 43022874 43022874 A C CDAN1 Missense_Mutation p.F699C 0.24 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 15 43569150 43569150 A G TGM7 Missense_Mutation p.V628A 0.27 deleterious(0) benign(0.257) TCGA-AA-A00N-01 15 43661272 43661272 C T ZSCAN29 Silent p.P124P 0.27 TCGA-AA-A00N-01 15 43699591 43699591 A G TP53BP1 Missense_Mutation p.V1975A 0.15 tolerated(0.1) benign(0.076) TCGA-AA-A00N-01 15 43699633 43699633 C T TP53BP1 Missense_Mutation p.R1961K 0.27 tolerated(0.07) benign(0.073) TCGA-AA-A00N-01 15 43705327 43705327 T G TP53BP1 Missense_Mutation p.E1765D 0.07 tolerated(0.13) possibly_damaging(0.756) TCGA-AA-A00N-01 15 43707863 43707863 C A TP53BP1 Missense_Mutation p.R1673I 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 15 43724829 43724829 C A TP53BP1 Nonsense_Mutation p.E1080* 0.25 TCGA-AA-A00N-01 15 43730552 43730552 C T TP53BP1 Missense_Mutation p.R1054Q 0.23 tolerated(0.31) benign(0.005) TCGA-AA-A00N-01 15 43897567 43897567 T G STRC Missense_Mutation p.E1275D 0.19 tolerated(0.5) benign(0.01) TCGA-AA-A00N-01 15 44120426 44120426 G A WDR76 Silent p.T108T 0.06 TCGA-AA-A00N-01 15 44890524 44890524 C A SPG11 Nonsense_Mutation p.E1314* 0.16 TCGA-AA-A00N-01 15 45059608 45059608 G A TRIM69 Missense_Mutation p.E381K 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A00N-01 15 45365580 45365580 C T SORD Missense_Mutation p.S309L 0.22 tolerated(0.1) possibly_damaging(0.678) TCGA-AA-A00N-01 15 45400290 45400290 C T DUOX2 Missense_Mutation p.R510Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 15 45409979 45409979 C T DUOXA1 Missense_Mutation p.E396K 0.24 deleterious_low_confidence(0) benign(0.012) TCGA-AA-A00N-01 15 45428767 45428767 C T DUOX1 Silent p.F322F 0.27 TCGA-AA-A00N-01 15 45460281 45460281 T G SHF Missense_Mutation p.K379T 0.21 deleterious(0) possibly_damaging(0.557) TCGA-AA-A00N-01 15 48717653 48717653 T C FBN1 Missense_Mutation p.N2456D 0.17 possibly_damaging(0.814) TCGA-AA-A00N-01 15 48760266 48760266 C T FBN1 Missense_Mutation p.R1539Q 0.23 benign(0.001) TCGA-AA-A00N-01 15 48802295 48802295 G T FBN1 Missense_Mutation p.H554N 0.26 possibly_damaging(0.674) TCGA-AA-A00N-01 15 48805787 48805787 C T FBN1 Missense_Mutation p.R516Q 0.28 benign(0.416) TCGA-AA-A00N-01 15 49048700 49048700 T G CEP152 Missense_Mutation p.E915D 0.28 tolerated(0.06) possibly_damaging(0.555) TCGA-AA-A00N-01 15 49081034 49081034 C A CEP152 Missense_Mutation p.K379N 0.19 tolerated(0.09) benign(0.069) TCGA-AA-A00N-01 15 49172380 49172380 T A EID1 3'UTR 0.17 TCGA-AA-A00N-01 15 49447796 49447796 G T COPS2 5'UTR 0.20 TCGA-AA-A00N-01 15 49620916 49620916 A G GALK2 3'Flank 0.23 TCGA-AA-A00N-01 15 49663591 49663591 C T FAM227B Missense_Mutation p.D340N 0.25 tolerated(0.16) benign(0.147) TCGA-AA-A00N-01 15 49880219 49880219 C A FAM227B Missense_Mutation p.K133N 0.18 deleterious(0.02) probably_damaging(0.965) TCGA-AA-A00N-01 15 50189523 50189523 A C ATP8B4 Missense_Mutation p.F888C 0.21 deleterious(0.02) benign(0.038) TCGA-AA-A00N-01 15 50223434 50223434 G T ATP8B4 Missense_Mutation p.F508L 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A00N-01 15 50331022 50331022 C T ATP8B4 Missense_Mutation p.R102H 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 15 50494807 50494807 C T SLC27A2 Missense_Mutation p.A271V 0.19 deleterious(0) probably_damaging(0.944) TCGA-AA-A00N-01 15 50786228 50786228 T G USP8 Intron 0.21 TCGA-AA-A00N-01 15 50786244 50786244 T C USP8 Intron 0.24 TCGA-AA-A00N-01 15 50884408 50884408 C A TRPM7 Nonsense_Mutation p.E1342* 0.13 TCGA-AA-A00N-01 15 50940919 50940919 T G TRPM7 Missense_Mutation p.N96H 0.21 deleterious(0.01) possibly_damaging(0.898) TCGA-AA-A00N-01 15 51031980 51031980 T G SPPL2A Missense_Mutation p.K210N 0.24 deleterious(0.04) possibly_damaging(0.678) TCGA-AA-A00N-01 15 51291454 51291454 C A AP4E1 Missense_Mutation p.F1030L 0.22 deleterious(0.01) possibly_damaging(0.615) TCGA-AA-A00N-01 15 51350013 51350013 C A TNFAIP8L3 3'UTR 0.18 TCGA-AA-A00N-01 15 51350429 51350429 G A TNFAIP8L3 Silent p.I176I 0.25 TCGA-AA-A00N-01 15 51766705 51766705 A G DMXL2 Missense_Mutation p.V2350A 0.24 deleterious(0.03) possibly_damaging(0.511) TCGA-AA-A00N-01 15 51772926 51772926 C T DMXL2 Missense_Mutation p.R2126H 0.15 tolerated(0.15) probably_damaging(0.919) TCGA-AA-A00N-01 15 51783802 51783802 A C DMXL2 Missense_Mutation p.I1642M 0.23 tolerated(0.13) possibly_damaging(0.674) TCGA-AA-A00N-01 15 51829727 51829727 C T DMXL2 Silent p.K525K 0.20 TCGA-AA-A00N-01 15 51993321 51993321 C A SCG3 Missense_Mutation p.H363N 0.15 tolerated_low_confidence(0.31) benign(0.009) TCGA-AA-A00N-01 15 52258286 52258286 C A LEO1 Missense_Mutation p.K158N 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-AA-A00N-01 15 52536689 52536689 G A MYO5C Nonsense_Mutation p.R752* 0.18 TCGA-AA-A00N-01 15 52681494 52681494 G T MYO5A Missense_Mutation p.L537I 0.21 tolerated(0.34) possibly_damaging(0.808) TCGA-AA-A00N-01 15 52702589 52702589 G A MYO5A Nonsense_Mutation p.R233* 0.20 TCGA-AA-A00N-01 15 53908294 53908294 A C WDR72 Silent p.S703S 0.23 TCGA-AA-A00N-01 15 53992098 53992098 G A WDR72 Silent p.S538S 0.25 TCGA-AA-A00N-01 15 53994424 53994424 G T WDR72 Silent p.I492I 0.07 TCGA-AA-A00N-01 15 54306885 54306885 G A UNC13C Silent p.A595A 0.28 TCGA-AA-A00N-01 15 54307945 54307945 G T UNC13C Nonsense_Mutation p.E949* 0.24 TCGA-AA-A00N-01 15 54308053 54308053 G C UNC13C Missense_Mutation p.A985P 0.23 deleterious_low_confidence(0.02) benign(0.432) TCGA-AA-A00N-01 15 55632894 55632894 T C PIGB Missense_Mutation p.Y311H 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 15 55965576 55965576 G A PRTG Silent p.S615S 0.16 TCGA-AA-A00N-01 15 55965838 55965838 C T PRTG Missense_Mutation p.R528Q 0.13 tolerated(0.2) benign(0.2) TCGA-AA-A00N-01 15 56155254 56155254 T C NEDD4 Silent p.Q524Q 0.19 TCGA-AA-A00N-01 15 56208062 56208062 A G NEDD4 Missense_Mutation p.V323A 0.09 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-AA-A00N-01 15 56208381 56208381 G A NEDD4 Missense_Mutation p.P217S 0.14 tolerated_low_confidence(0.1) benign(0.003) TCGA-AA-A00N-01 15 57931738 57931738 G A GCOM1 Missense_Mutation p.E372K 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 15 58001123 58001123 T G POLR2M Missense_Mutation p.S109A 0.05 deleterious(0.04) benign(0.081) TCGA-AA-A00N-01 15 58830575 58830575 G A LIPC Silent p.T44T 0.26 TCGA-AA-A00N-01 15 58830637 58830637 G A LIPC Missense_Mutation p.R65Q 0.06 tolerated(0.6) benign(0.015) TCGA-AA-A00N-01 15 58861051 58861051 G T LIPC 3'UTR 0.33 TCGA-AA-A00N-01 15 59417044 59417044 G A CCNB2 Missense_Mutation p.D389N 0.24 tolerated(0.28) benign(0.001) TCGA-AA-A00N-01 15 60678259 60678259 C T ANXA2 Missense_Mutation p.E24K 0.15 tolerated(0.11) benign(0.01) TCGA-AA-A00N-01 15 60789576 60789576 A C RORA 3'UTR 0.22 TCGA-AA-A00N-01 15 62159963 62159963 T G VPS13C Intron 0.20 TCGA-AA-A00N-01 15 62250897 62250897 C A VPS13C Missense_Mutation p.D1359Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 15 62363045 62363045 T G C2CD4A 3'UTR 0.20 TCGA-AA-A00N-01 15 63447883 63447883 G T RPS27L Missense_Mutation p.L55I 0.17 tolerated(0.13) benign(0.012) TCGA-AA-A00N-01 15 63880577 63880577 G T USP3 Missense_Mutation p.K390N 0.22 tolerated(0.35) probably_damaging(0.986) TCGA-AA-A00N-01 15 63904453 63904453 A G HERC1 Silent p.D4799D 0.20 TCGA-AA-A00N-01 15 63984739 63984739 C T HERC1 Missense_Mutation p.E1901K 0.30 possibly_damaging(0.563) TCGA-AA-A00N-01 15 64045284 64045284 C T HERC1 Missense_Mutation p.G592D 0.15 probably_damaging(1) TCGA-AA-A00N-01 15 64231444 64231444 C T DAPK2 Silent p.T190T 0.20 TCGA-AA-A00N-01 15 64410415 64410415 C A SNX1 Missense_Mutation p.S124Y 0.09 tolerated(0.14) benign(0.111) TCGA-AA-A00N-01 15 64686238 64686238 A C TRIP4 Missense_Mutation p.E65D 0.19 tolerated(0.45) benign(0.004) TCGA-AA-A00N-01 15 64747402 64747402 A G TRIP4 3'UTR 0.24 TCGA-AA-A00N-01 15 65295576 65295576 G A MTFMT Nonsense_Mutation p.R332* 0.26 TCGA-AA-A00N-01 15 65627716 65627716 G A IGDCC3 Nonsense_Mutation p.R200* 0.19 TCGA-AA-A00N-01 15 65983311 65983311 G A DENND4A Silent p.V1206V 0.21 TCGA-AA-A00N-01 15 65983601 65983601 G T DENND4A Missense_Mutation p.L1110I 0.20 deleterious(0.05) possibly_damaging(0.87) TCGA-AA-A00N-01 15 65994168 65994168 G A DENND4A Nonsense_Mutation p.R831* 0.29 TCGA-AA-A00N-01 15 66048662 66048662 C A DENND4A Nonsense_Mutation p.E43* 0.18 TCGA-AA-A00N-01 15 66807882 66807882 A G ZWILCH Missense_Mutation p.T74A 0.23 tolerated(0.33) benign(0.02) TCGA-AA-A00N-01 15 67768050 67768050 G A IQCH Missense_Mutation p.R898H 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 15 68661569 68661569 A G ITGA11 Missense_Mutation p.V73A 0.20 deleterious(0.01) possibly_damaging(0.566) TCGA-AA-A00N-01 15 69006921 69006921 C T CORO2B Silent p.I263I 0.21 TCGA-AA-A00N-01 15 69689895 69689895 T G PAQR5 Missense_Mutation p.F201V 0.08 tolerated(0.07) benign(0.11) TCGA-AA-A00N-01 15 70371788 70371788 C T TLE3 Intron 0.39 TCGA-AA-A00N-01 15 70959098 70959098 C A UACA Nonsense_Mutation p.E1309* 0.21 TCGA-AA-A00N-01 15 70975129 70975129 C A UACA Nonsense_Mutation p.E264* 0.21 TCGA-AA-A00N-01 15 70976763 70976763 C T UACA Missense_Mutation p.E209K 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A00N-01 15 71124303 71124303 G A LARP6 3'UTR 0.21 TCGA-AA-A00N-01 15 71839635 71839635 C T THSD4 Intron 0.27 TCGA-AA-A00N-01 15 72190968 72190968 A G MYO9A Silent p.V1292V 0.24 TCGA-AA-A00N-01 15 72191194 72191194 C T MYO9A Missense_Mutation p.R1217Q 0.18 tolerated_low_confidence(0.09) benign(0.03) TCGA-AA-A00N-01 15 72320121 72320121 T G MYO9A Missense_Mutation p.K317Q 0.27 deleterious(0) benign(0.35) TCGA-AA-A00N-01 15 72431940 72431940 T G SENP8 5'UTR 0.11 TCGA-AA-A00N-01 15 72433130 72433130 C T SENP8 3'UTR 0.24 TCGA-AA-A00N-01 15 72580787 72580787 C T CELF6 Missense_Mutation p.E394K 0.26 deleterious(0) benign(0.263) TCGA-AA-A00N-01 15 72691082 72691082 G A TMEM202 Missense_Mutation p.R57Q 0.20 deleterious(0.03) benign(0.372) TCGA-AA-A00N-01 15 72700038 72700038 T A TMEM202 Missense_Mutation p.I209N 0.21 deleterious(0) possibly_damaging(0.748) TCGA-AA-A00N-01 15 72953677 72953677 G A GOLGA6B Missense_Mutation p.A213T 0.16 tolerated(0.13) possibly_damaging(0.695) TCGA-AA-A00N-01 15 73418870 73418870 C A NEO1 Silent p.T279T 0.22 TCGA-AA-A00N-01 15 73528770 73528770 G A NEO1 Silent p.T458T 0.11 TCGA-AA-A00N-01 15 73580877 73580877 C T NEO1 Nonsense_Mutation p.R1212* 0.08 TCGA-AA-A00N-01 15 73590697 73590697 C T NEO1 Nonsense_Mutation p.R1304* 0.24 TCGA-AA-A00N-01 15 73614848 73614848 G A HCN4 Missense_Mutation p.R1196C 0.18 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-AA-A00N-01 15 73615129 73615129 C T HCN4 Missense_Mutation p.R1102H 0.35 tolerated_low_confidence(0.18) benign(0.092) TCGA-AA-A00N-01 15 73621930 73621930 C T HCN4 Missense_Mutation p.R525H 0.23 deleterious(0) unknown(0) TCGA-AA-A00N-01 15 73624588 73624588 C T HCN4 Missense_Mutation p.V419M 0.16 tolerated(0.14) unknown(0) TCGA-AA-A00N-01 15 73659833 73659833 T C HCN4 Missense_Mutation p.D260G 0.24 deleterious(0) unknown(0) TCGA-AA-A00N-01 15 74043351 74043351 G A C15orf59 Missense_Mutation p.R41C 0.19 deleterious(0.02) possibly_damaging(0.606) TCGA-AA-A00N-01 15 74173770 74173770 G T TBC1D21 Nonsense_Mutation p.E31* 0.31 TCGA-AA-A00N-01 15 74425519 74425519 G A ISLR2 Missense_Mutation p.A142T 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 15 74468711 74468711 C T ISLR 3'UTR 0.21 TCGA-AA-A00N-01 15 74710642 74710642 G A SEMA7A Silent p.I113I 0.16 TCGA-AA-A00N-01 15 74836357 74836357 C T ARID3B Missense_Mutation p.A27V 0.21 tolerated(0.16) benign(0.011) TCGA-AA-A00N-01 15 75134678 75134678 C A ULK3 Missense_Mutation p.E62D 0.05 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 15 75647145 75647145 G A NEIL1 Missense_Mutation p.R363Q 0.28 tolerated_low_confidence(0.27) benign(0.004) TCGA-AA-A00N-01 15 75650645 75650645 A G MAN2C1 Missense_Mutation p.F832S 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 15 75688616 75688616 A G SIN3A Silent p.V692V 0.24 TCGA-AA-A00N-01 15 75901981 75901981 A G SNUPN Silent p.S140S 0.21 TCGA-AA-A00N-01 15 76668545 76668545 G A SCAPER Silent p.I1271I 0.06 TCGA-AA-A00N-01 15 76763674 76763674 G T SCAPER Missense_Mutation p.S986Y 0.26 deleterious(0.03) benign(0.062) TCGA-AA-A00N-01 15 78215289 78215289 C A RP11-114H24.7 3'Flank 0.22 TCGA-AA-A00N-01 15 78346415 78346415 C T TBC1D2B Missense_Mutation p.G159R 0.13 tolerated(0.23) benign(0.387) TCGA-AA-A00N-01 15 78526729 78526729 C A ACSBG1 Nonsense_Mutation p.E39* 0.25 TCGA-AA-A00N-01 15 78575727 78575727 T C WDR61 3'UTR 0.26 TCGA-AA-A00N-01 15 78577679 78577679 G A WDR61 Missense_Mutation p.S251L 0.24 deleterious(0.03) possibly_damaging(0.559) TCGA-AA-A00N-01 15 79284086 79284086 G A RASGRF1 Silent p.I1042I 0.19 TCGA-AA-A00N-01 15 79382679 79382679 G A RASGRF1 Silent p.F54F 0.22 TCGA-AA-A00N-01 15 79587198 79587198 G T ANKRD34C Missense_Mutation p.M524I 0.28 tolerated(0.83) benign(0.042) TCGA-AA-A00N-01 15 79588078 79588078 C A ANKRD34C 3'UTR 0.17 TCGA-AA-A00N-01 15 79588257 79588257 G T ANKRD34C 3'UTR 0.21 TCGA-AA-A00N-01 15 79588800 79588800 G A ANKRD34C 3'UTR 0.24 TCGA-AA-A00N-01 15 79749474 79749474 G A KIAA1024 Missense_Mutation p.E329K 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 15 79750157 79750157 C T KIAA1024 Silent p.C556C 0.27 TCGA-AA-A00N-01 15 79750158 79750158 G A KIAA1024 Missense_Mutation p.D557N 0.15 tolerated(0.16) benign(0.426) TCGA-AA-A00N-01 15 80216479 80216479 C T C15ORF37 3'UTR 0.18 TCGA-AA-A00N-01 15 81046694 81046694 G A ABHD17C Missense_Mutation p.E325K 0.16 deleterious(0.05) benign(0.298) TCGA-AA-A00N-01 15 81221257 81221257 G A KIAA1199 Missense_Mutation p.G812D 0.21 deleterious(0) probably_damaging(0.984) TCGA-AA-A00N-01 15 81572104 81572104 C A IL16 Missense_Mutation p.S357Y 0.21 tolerated(0.07) possibly_damaging(0.898) TCGA-AA-A00N-01 15 82563946 82563946 C T FAM154B Missense_Mutation p.S19L 0.28 deleterious(0) benign(0.053) TCGA-AA-A00N-01 15 83350314 83350314 G A AP3B2 Missense_Mutation p.R127C 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 15 83456038 83456038 G T FSD2 Silent p.L35L 0.23 TCGA-AA-A00N-01 15 83931925 83931925 G A BNC1 Missense_Mutation p.A693V 0.16 deleterious(0.02) benign(0.11) TCGA-AA-A00N-01 15 83932526 83932526 G A BNC1 Missense_Mutation p.R493C 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 15 84116282 84116282 C T SH3GL3 5'UTR 0.06 TCGA-AA-A00N-01 15 85121439 85121439 C A LINC00933 RNA 0.30 TCGA-AA-A00N-01 15 85327062 85327062 G A ZNF592 Missense_Mutation p.E386K 0.23 deleterious(0.01) possibly_damaging(0.542) TCGA-AA-A00N-01 15 85401256 85401256 C T ALPK3 Missense_Mutation p.S1298F 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-AA-A00N-01 15 85478327 85478327 G A SLC28A1 Missense_Mutation p.A429T 0.08 tolerated(0.07) possibly_damaging(0.623) TCGA-AA-A00N-01 15 88679715 88679715 A G NTRK3 Missense_Mutation p.S250P 0.25 tolerated(0.13) probably_damaging(0.997) TCGA-AA-A00N-01 15 89151337 89151337 T C MIR1179 5'Flank 0.11 TCGA-AA-A00N-01 15 89401133 89401133 C A ACAN Missense_Mutation p.L1773I 0.17 tolerated(0.47) possibly_damaging(0.459) TCGA-AA-A00N-01 15 89401939 89401939 C T ACAN Silent p.F2041F 0.20 TCGA-AA-A00N-01 15 89450599 89450599 C T MFGE8 Missense_Mutation p.E72K 0.28 tolerated(0.92) benign(0.006) TCGA-AA-A00N-01 15 89731522 89731522 A G ABHD2 Missense_Mutation p.D305G 0.15 deleterious(0.01) probably_damaging(0.949) TCGA-AA-A00N-01 15 90020349 90020349 T C RHCG Missense_Mutation p.T401A 0.17 tolerated(0.14) benign(0.01) TCGA-AA-A00N-01 15 90173713 90173713 C T KIF7 Silent p.T1041T 0.16 TCGA-AA-A00N-01 15 90245132 90245132 C A WDR93 Missense_Mutation p.S52Y 0.24 deleterious(0.03) benign(0.311) TCGA-AA-A00N-01 15 90897875 90897875 A G ZNF774 Intron 0.15 TCGA-AA-A00N-01 15 90903825 90903825 A G ZNF774 Silent p.Q254Q 0.29 TCGA-AA-A00N-01 15 90983844 90983844 G A IQGAP1 Missense_Mutation p.A216T 0.31 tolerated(0.07) benign(0.14) TCGA-AA-A00N-01 15 91038057 91038057 C A IQGAP1 Missense_Mutation p.Q1581K 0.20 tolerated(0.05) benign(0.265) TCGA-AA-A00N-01 15 91346823 91346823 G T BLM Missense_Mutation p.R1144I 0.18 deleterious(0.02) probably_damaging(0.967) TCGA-AA-A00N-01 15 91493429 91493429 A C UNC45A Missense_Mutation p.K707Q 0.19 tolerated(0.23) benign(0.265) TCGA-AA-A00N-01 15 91517421 91517421 C T PRC1 Missense_Mutation p.R469Q 0.19 tolerated(0.09) benign(0.148) TCGA-AA-A00N-01 15 91527973 91527973 G A PRC1 Missense_Mutation p.P32S 0.21 deleterious(0.02) possibly_damaging(0.459) TCGA-AA-A00N-01 15 91542041 91542041 G T VPS33B 3'UTR 0.24 TCGA-AA-A00N-01 15 91803627 91803627 G T SV2B Missense_Mutation p.E332D 0.23 tolerated(0.08) possibly_damaging(0.525) TCGA-AA-A00N-01 15 92663824 92663824 T G SLCO3A1 Missense_Mutation p.F380C 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 15 92981823 92981823 C T ST8SIA2 Silent p.A177A 0.19 TCGA-AA-A00N-01 15 94841631 94841631 G A MCTP2 Missense_Mutation p.R46H 0.19 tolerated(0.15) benign(0.11) TCGA-AA-A00N-01 15 94882595 94882595 G A MCTP2 Silent p.L238L 0.18 TCGA-AA-A00N-01 15 94913352 94913352 G A MCTP2 Missense_Mutation p.G509S 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 15 95013638 95013638 T G MCTP2 Missense_Mutation p.F813V 0.21 deleterious(0) benign(0.046) TCGA-AA-A00N-01 15 96877354 96877354 C T NR2F2 Silent p.F164F 0.17 TCGA-AA-A00N-01 15 99023939 99023939 C A FAM169B Missense_Mutation p.R25I 0.19 deleterious(0.04) possibly_damaging(0.515) TCGA-AA-A00N-01 15 99511565 99511565 C A PGPEP1L 3'UTR 0.24 TCGA-AA-A00N-01 16 10721416 10721416 C T TEKT5 3'UTR 0.25 TCGA-AA-A00N-01 16 11114054 11114054 C T CLEC16A Silent p.I436I 0.27 TCGA-AA-A00N-01 16 11272397 11272397 C T CLEC16A Silent p.V1004V 0.09 TCGA-AA-A00N-01 16 1129399 1129399 C T SSTR5 Silent p.F177F 0.31 TCGA-AA-A00N-01 16 11367368 11367368 C T PRM3 Missense_Mutation p.E29K 0.27 deleterious_low_confidence(0.05) possibly_damaging(0.502) TCGA-AA-A00N-01 16 12136879 12136879 G A SNX29 Missense_Mutation p.E125K 0.23 deleterious(0) benign(0.422) TCGA-AA-A00N-01 16 1260130 1260130 G T CACNA1H Missense_Mutation p.Q1280H 0.16 tolerated(0.17) possibly_damaging(0.723) TCGA-AA-A00N-01 16 1260630 1260630 C T CACNA1H Silent p.F1339F 0.21 TCGA-AA-A00N-01 16 1279707 1279707 G A TPSB2 Silent p.I31I 0.34 TCGA-AA-A00N-01 16 14711476 14711476 C T PARN Missense_Mutation p.G120E 0.18 deleterious(0.02) possibly_damaging(0.875) TCGA-AA-A00N-01 16 1484474 1484474 G T CCDC154 Missense_Mutation p.L654M 0.08 tolerated(0.09) benign(0.305) TCGA-AA-A00N-01 16 14973918 14973918 T G NOMO1 Missense_Mutation p.F935C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 16 14989997 14989997 C A NOMO1 3'UTR 0.09 TCGA-AA-A00N-01 16 150496 150496 G A NPRL3 Missense_Mutation p.S214L 0.17 deleterious(0) benign(0.049) TCGA-AA-A00N-01 16 15141729 15141729 A C NTAN1 Missense_Mutation p.V78G 0.19 deleterious(0) possibly_damaging(0.872) TCGA-AA-A00N-01 16 15177400 15177400 A T RRN3 Missense_Mutation p.F212L 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-AA-A00N-01 16 15719020 15719020 C T KIAA0430 Missense_Mutation p.R655H 0.20 tolerated_low_confidence(0.14) benign(0.007) TCGA-AA-A00N-01 16 15844028 15844028 G A MYH11 Silent p.F682F 0.23 TCGA-AA-A00N-01 16 15850344 15850344 G A MYH11 Silent p.L542L 0.09 TCGA-AA-A00N-01 16 15869933 15869933 A G MYH11 Splice_Site p.X304_splice 0.23 TCGA-AA-A00N-01 16 15961280 15961280 A G FOPNL 3'UTR 0.26 TCGA-AA-A00N-01 16 15967359 15967359 C A FOPNL Missense_Mutation p.R146I 0.18 tolerated_low_confidence(0.07) possibly_damaging(0.828) TCGA-AA-A00N-01 16 1607992 1607992 G T IFT140 Missense_Mutation p.F781L 0.11 deleterious(0.04) benign(0.023) TCGA-AA-A00N-01 16 1642286 1642286 G A IFT140 Silent p.S175S 0.22 TCGA-AA-A00N-01 16 1723919 1723919 A G CRAMP1L Missense_Mutation p.N1228S 0.11 tolerated(0.4) benign(0.28) TCGA-AA-A00N-01 16 1735518 1735518 T C HN1L Silent p.N41N 0.21 TCGA-AA-A00N-01 16 1840652 1840652 G A IGFALS Silent p.V627V 0.19 TCGA-AA-A00N-01 16 18549977 18549977 G T NOMO2 Nonsense_Mutation p.S364* 0.11 TCGA-AA-A00N-01 16 18841655 18841655 C T SMG1 Silent p.P2943P 0.15 TCGA-AA-A00N-01 16 18866017 18866017 C T SMG1 Missense_Mutation p.E1482K 0.25 tolerated(0.46) probably_damaging(0.972) TCGA-AA-A00N-01 16 18881983 18881983 C T SMG1 Missense_Mutation p.R814Q 0.21 tolerated(0.08) probably_damaging(0.978) TCGA-AA-A00N-01 16 19883322 19883322 G T GPRC5B Silent p.V282V 0.12 TCGA-AA-A00N-01 16 20329677 20329677 C A GP2 Silent p.T364T 0.25 TCGA-AA-A00N-01 16 20335551 20335551 G A GP2 Missense_Mutation p.S41L 0.16 deleterious(0) possibly_damaging(0.505) TCGA-AA-A00N-01 16 20348713 20348713 C T UMOD Missense_Mutation p.R547Q 0.19 tolerated(0.1) possibly_damaging(0.718) TCGA-AA-A00N-01 16 20370610 20370610 A G PDILT 3'UTR 0.17 TCGA-AA-A00N-01 16 20498040 20498040 C T ACSM2A 3'UTR 0.20 TCGA-AA-A00N-01 16 20682940 20682940 A G ACSM1 Missense_Mutation p.V222A 0.10 tolerated(1) benign(0.01) TCGA-AA-A00N-01 16 20749240 20749240 A G THUMPD1 Missense_Mutation p.Y149H 0.21 tolerated(0.68) benign(0.002) TCGA-AA-A00N-01 16 20860798 20860798 C T AC004381.6 Missense_Mutation p.S774L 0.09 deleterious_low_confidence(0) benign(0.139) TCGA-AA-A00N-01 16 20926925 20926925 T G LYRM1 Missense_Mutation p.I16M 0.07 deleterious(0) possibly_damaging(0.73) TCGA-AA-A00N-01 16 21051214 21051214 C A DNAH3 Nonsense_Mutation p.E1564* 0.20 TCGA-AA-A00N-01 16 21289484 21289484 G A CRYM Missense_Mutation p.A30V 0.25 tolerated(0.08) possibly_damaging(0.609) TCGA-AA-A00N-01 16 21469090 21469090 A G snoU13 5'Flank 0.26 TCGA-AA-A00N-01 16 22132878 22132878 C A VWA3A Missense_Mutation p.F432L 0.20 deleterious(0) possibly_damaging(0.578) TCGA-AA-A00N-01 16 22327929 22327929 G A POLR3E Missense_Mutation p.R217H 0.20 tolerated(0.1) possibly_damaging(0.455) TCGA-AA-A00N-01 16 23226433 23226433 C T SCNN1G Silent p.F531F 0.23 TCGA-AA-A00N-01 16 23391473 23391473 G T SCNN1B Nonsense_Mutation p.E509* 0.06 TCGA-AA-A00N-01 16 2342188 2342188 A C ABCA3 Missense_Mutation p.I822M 0.19 deleterious(0) probably_damaging(0.96) TCGA-AA-A00N-01 16 23504707 23504707 C T GGA2 Missense_Mutation p.E109K 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 16 24801012 24801012 C A TNRC6A Missense_Mutation p.S350Y 0.21 deleterious(0) possibly_damaging(0.73) TCGA-AA-A00N-01 16 24802647 24802647 C T TNRC6A Missense_Mutation p.S895F 0.17 deleterious(0) possibly_damaging(0.828) TCGA-AA-A00N-01 16 24990327 24990327 C A ARHGAP17 Splice_Site p.X18_splice 0.19 TCGA-AA-A00N-01 16 25251868 25251868 G A ZKSCAN2 Missense_Mutation p.P725S 0.20 tolerated(0.89) benign(0.092) TCGA-AA-A00N-01 16 25255383 25255383 G A ZKSCAN2 Silent p.H568H 0.18 TCGA-AA-A00N-01 16 2564154 2564154 T C ATP6V0C Missense_Mutation p.M17T 0.12 tolerated(0.07) benign(0.006) TCGA-AA-A00N-01 16 27080046 27080046 T G C16orf82 RNA 0.17 TCGA-AA-A00N-01 16 27732945 27732945 C T KIAA0556 Nonsense_Mutation p.R558* 0.18 TCGA-AA-A00N-01 16 27761525 27761525 C T KIAA0556 Missense_Mutation p.R1082W 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 16 2834992 2834992 T C PRSS33 Intron 0.12 TCGA-AA-A00N-01 16 28616983 28616983 G A SULT1A1 3'UTR 0.14 TCGA-AA-A00N-01 16 28617202 28617202 G A SULT1A1 Silent p.F276F 0.16 TCGA-AA-A00N-01 16 28836700 28836700 G T ATXN2L Nonsense_Mutation p.G105* 0.17 TCGA-AA-A00N-01 16 28895923 28895923 G A ATP2A1 Missense_Mutation p.R164Q 0.20 deleterious(0) possibly_damaging(0.489) TCGA-AA-A00N-01 16 29124400 29124400 G T RP11-426C22.5 5'Flank 0.20 TCGA-AA-A00N-01 16 29127809 29127809 G A RP11-426C22.5 Intron 0.23 TCGA-AA-A00N-01 16 29908195 29908195 C T SEZ6L2 Silent p.T153T 0.23 TCGA-AA-A00N-01 16 29908293 29908293 C A SEZ6L2 Nonsense_Mutation p.E121* 0.16 TCGA-AA-A00N-01 16 29922463 29922463 C T KCTD13 Missense_Mutation p.E197K 0.25 deleterious(0) possibly_damaging(0.604) TCGA-AA-A00N-01 16 30133297 30133297 G A MAPK3 Silent p.R67R 0.09 TCGA-AA-A00N-01 16 30455809 30455809 C T SEPHS2 Missense_Mutation p.A414T 0.24 possibly_damaging(0.85) TCGA-AA-A00N-01 16 30456341 30456341 G T SEPHS2 Missense_Mutation p.F236L 0.26 benign(0.018) TCGA-AA-A00N-01 16 30495180 30495180 G A ITGAL Missense_Mutation p.R252Q 0.29 deleterious(0) probably_damaging(0.985) TCGA-AA-A00N-01 16 30594859 30594859 T C ZNF785 Intron 0.33 TCGA-AA-A00N-01 16 30724642 30724642 G A SRCAP Silent p.A748A 0.17 TCGA-AA-A00N-01 16 30762621 30762621 C T PHKG2 Intron 0.09 TCGA-AA-A00N-01 16 30779760 30779760 G A RNF40 Missense_Mutation p.A630T 0.23 tolerated(0.24) benign(0.001) TCGA-AA-A00N-01 16 30997933 30997933 G A HSD3B7 Missense_Mutation p.E147K 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 16 3119289 3119289 G A IL32 Missense_Mutation p.G167E 0.11 tolerated_low_confidence(0.34) benign(0.083) TCGA-AA-A00N-01 16 31435264 31435264 C T ITGAD Silent p.F1048F 0.25 TCGA-AA-A00N-01 16 31447991 31447991 C A ZNF843 Missense_Mutation p.E60D 0.15 deleterious_low_confidence(0) benign(0.388) TCGA-AA-A00N-01 16 31733977 31733977 G T ZNF720 Nonsense_Mutation p.E12* 0.24 TCGA-AA-A00N-01 16 31927357 31927357 G A ZNF267 Missense_Mutation p.R596Q 0.18 tolerated(0.3) possibly_damaging(0.756) TCGA-AA-A00N-01 16 31927437 31927437 C T ZNF267 Missense_Mutation p.R623W 0.17 deleterious(0.02) possibly_damaging(0.568) TCGA-AA-A00N-01 16 3254784 3254784 G A OR1F1 Missense_Mutation p.D180N 0.28 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 16 3299514 3299514 G A MEFV Missense_Mutation p.P393S 0.32 tolerated(0.16) probably_damaging(0.955) TCGA-AA-A00N-01 16 3339616 3339616 G A ZNF263 Silent p.K370K 0.17 TCGA-AA-A00N-01 16 3351773 3351773 G T TIGD7 5'UTR 0.26 TCGA-AA-A00N-01 16 3367517 3367517 A C ZNF75A Missense_Mutation p.Q180P 0.07 deleterious(0) probably_damaging(0.972) TCGA-AA-A00N-01 16 336849 336849 A C PDIA2 Missense_Mutation p.K479N 0.20 tolerated(1) benign(0.033) TCGA-AA-A00N-01 16 3432997 3432997 G A ZSCAN32 Missense_Mutation p.A438V 0.16 tolerated(0.09) benign(0.27) TCGA-AA-A00N-01 16 3434774 3434774 G A ZSCAN32 Missense_Mutation p.R95C 0.28 tolerated(0.08) possibly_damaging(0.671) TCGA-AA-A00N-01 16 3458869 3458869 C T ZNF174 Missense_Mutation p.R392C 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A00N-01 16 3551077 3551077 C T CLUAP1 Missense_Mutation p.R4C 0.18 deleterious(0) probably_damaging(0.987) TCGA-AA-A00N-01 16 3607640 3607640 C T NLRC3 Missense_Mutation p.A732T 0.15 deleterious(0.02) possibly_damaging(0.904) TCGA-AA-A00N-01 16 3611741 3611741 G A NLRC3 Silent p.S706S 0.30 TCGA-AA-A00N-01 16 3640699 3640699 G A SLX4 Silent p.A980A 0.06 TCGA-AA-A00N-01 16 3777616 3777616 G A CREBBP 3'UTR 0.19 TCGA-AA-A00N-01 16 3778043 3778043 G A CREBBP Silent p.I2335I 0.06 TCGA-AA-A00N-01 16 3788617 3788617 C T CREBBP Missense_Mutation p.R1446H 0.30 unknown(0) TCGA-AA-A00N-01 16 4242186 4242186 C T SRL Missense_Mutation p.E464K 0.25 tolerated_low_confidence(0.07) probably_damaging(0.923) TCGA-AA-A00N-01 16 4562821 4562821 G A CDIP1 Silent p.F162F 0.27 TCGA-AA-A00N-01 16 4625692 4625692 C A C16orf96 Missense_Mutation p.S404Y 0.13 tolerated(0.7) possibly_damaging(0.781) TCGA-AA-A00N-01 16 46743455 46743455 C A MYLK3 Missense_Mutation p.W799L 0.18 deleterious(0.03) benign(0.32) TCGA-AA-A00N-01 16 46990909 46990909 G T DNAJA2 3'UTR 0.18 TCGA-AA-A00N-01 16 47536904 47536904 G A PHKB Missense_Mutation p.R103Q 0.27 deleterious(0) possibly_damaging(0.686) TCGA-AA-A00N-01 16 48172228 48172228 T G ABCC12 Missense_Mutation p.K297T 0.29 tolerated(0.12) benign(0.128) TCGA-AA-A00N-01 16 48329998 48329998 C A LONP2 Missense_Mutation p.L486I 0.20 tolerated(0.27) benign(0.225) TCGA-AA-A00N-01 16 4909934 4909934 G T UBN1 Missense_Mutation p.E212D 0.21 tolerated(0.16) benign(0.279) TCGA-AA-A00N-01 16 49313290 49313290 T G CBLN1 3'UTR 0.22 TCGA-AA-A00N-01 16 4934951 4934951 G T PPL Silent p.V1235V 0.25 TCGA-AA-A00N-01 16 49670091 49670091 C T ZNF423 Missense_Mutation p.R991H 0.32 tolerated(0.07) probably_damaging(0.924) TCGA-AA-A00N-01 16 49670611 49670611 C T ZNF423 Missense_Mutation p.A818T 0.22 tolerated(0.18) benign(0.142) TCGA-AA-A00N-01 16 50128644 50128644 A C HEATR3 Missense_Mutation p.E513D 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 16 50136235 50136235 T G HEATR3 Silent p.A603A 0.19 TCGA-AA-A00N-01 16 50346937 50346937 A C ADCY7 Missense_Mutation p.D914A 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 16 50355895 50355895 C T BRD7 Missense_Mutation p.E500K 0.22 tolerated(0.27) possibly_damaging(0.79) TCGA-AA-A00N-01 16 50383932 50383932 A G BRD7 Splice_Site p.X197_splice 0.26 TCGA-AA-A00N-01 16 5061163 5061163 G A SEC14L5 Missense_Mutation p.S623N 0.20 tolerated(0.59) benign(0.002) TCGA-AA-A00N-01 16 50667159 50667159 C T NKD1 Nonsense_Mutation p.R294* 0.19 TCGA-AA-A00N-01 16 50701802 50701802 G A SNX20 3'Flank 0.41 TCGA-AA-A00N-01 16 50707905 50707905 C T SNX20 Silent p.A121A 0.26 TCGA-AA-A00N-01 16 51175982 51175982 C T SALL1 Missense_Mutation p.E51K 0.13 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 16 53352241 53352241 A C CHD9 Missense_Mutation p.N2552H 0.05 unknown(0) TCGA-AA-A00N-01 16 53358229 53358229 A C CHD9 Missense_Mutation p.N2690H 0.25 unknown(0) TCGA-AA-A00N-01 16 53404815 53404815 C A RP11-44F14.1 RNA 0.13 TCGA-AA-A00N-01 16 53686473 53686473 C T RPGRIP1L Missense_Mutation p.R709Q 0.27 deleterious(0.01) probably_damaging(0.933) TCGA-AA-A00N-01 16 54967813 54967813 C A IRX5 3'UTR 0.36 TCGA-AA-A00N-01 16 55364267 55364267 C T IRX6 3'UTR 0.15 TCGA-AA-A00N-01 16 55600907 55600907 G A CAPNS2 Missense_Mutation p.R80Q 0.25 tolerated(1) benign(0.002) TCGA-AA-A00N-01 16 55860154 55860154 C T CES1 Missense_Mutation p.R105Q 0.17 tolerated(0.07) benign(0.055) TCGA-AA-A00N-01 16 55880244 55880244 G A CES5A 3'UTR 0.21 TCGA-AA-A00N-01 16 55883625 55883625 G A CES5A Missense_Mutation p.T474M 0.11 tolerated(0.39) benign(0.243) TCGA-AA-A00N-01 16 55883663 55883663 G T CES5A Missense_Mutation p.F461L 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 16 56226127 56226127 T G GNAO1 5'UTR 0.19 TCGA-AA-A00N-01 16 56388954 56388954 G A RP11-441F2.5 5'Flank 0.09 TCGA-AA-A00N-01 16 56403130 56403130 C T AMFR Missense_Mutation p.R497Q 0.23 tolerated(0.1) possibly_damaging(0.477) TCGA-AA-A00N-01 16 56423145 56423145 C T AMFR Missense_Mutation p.E410K 0.06 tolerated(0.41) benign(0.155) TCGA-AA-A00N-01 16 56536583 56536583 A G BBS2 Splice_Site p.X314_splice 0.27 TCGA-AA-A00N-01 16 56536701 56536701 C T BBS2 Missense_Mutation p.R275Q 0.16 tolerated(0.05) possibly_damaging(0.782) TCGA-AA-A00N-01 16 56666649 56666649 C T MT1M Silent p.D2D 0.24 TCGA-AA-A00N-01 16 56700697 56700697 A G MT1G 3'UTR 0.31 TCGA-AA-A00N-01 16 56704905 56704905 C T MT1H 3'UTR 0.22 TCGA-AA-A00N-01 16 56974081 56974081 T G HERPUD1 Missense_Mutation p.F277V 0.07 deleterious(0.01) probably_damaging(0.926) TCGA-AA-A00N-01 16 57103748 57103748 G A NLRC5 Silent p.R1500R 0.17 TCGA-AA-A00N-01 16 57206200 57206200 C T FAM192A Missense_Mutation p.R104Q 0.24 tolerated(0.33) benign(0.015) TCGA-AA-A00N-01 16 57286224 57286224 G T ARL2BP 3'UTR 0.15 TCGA-AA-A00N-01 16 57406462 57406462 C A CX3CL1 5'UTR 0.26 TCGA-AA-A00N-01 16 57918228 57918228 G T CNGB1 Missense_Mutation p.S1199Y 0.32 deleterious(0.01) possibly_damaging(0.675) TCGA-AA-A00N-01 16 58559183 58559183 C T CNOT1 Silent p.A2228A 0.22 TCGA-AA-A00N-01 16 58573715 58573715 C T CNOT1 Missense_Mutation p.R1650Q 0.26 deleterious(0.01) possibly_damaging(0.787) TCGA-AA-A00N-01 16 61687749 61687749 G A CDH8 Silent p.V721V 0.12 TCGA-AA-A00N-01 16 61854904 61854904 C T CDH8 Missense_Mutation p.D317N 0.36 tolerated(0.29) benign(0.183) TCGA-AA-A00N-01 16 62055109 62055109 G T CDH8 Missense_Mutation p.Q67K 0.22 deleterious(0.01) benign(0.043) TCGA-AA-A00N-01 16 62055126 62055126 C A CDH8 Missense_Mutation p.R61I 0.18 deleterious(0) benign(0.034) TCGA-AA-A00N-01 16 65032593 65032593 T C CDH11 Missense_Mutation p.D132G 0.26 deleterious(0) possibly_damaging(0.886) TCGA-AA-A00N-01 16 66803886 66803886 C A CCDC79 Missense_Mutation p.K533N 0.09 tolerated(0.07) benign(0.001) TCGA-AA-A00N-01 16 66806648 66806648 C A CCDC79 Missense_Mutation p.E372D 0.22 deleterious(0.01) possibly_damaging(0.818) TCGA-AA-A00N-01 16 66944289 66944289 C A CDH16 Missense_Mutation p.D681Y 0.07 deleterious(0) possibly_damaging(0.707) TCGA-AA-A00N-01 16 66995265 66995265 C T CES3 Missense_Mutation p.L19F 0.23 tolerated(0.1) benign(0.002) TCGA-AA-A00N-01 16 67132628 67132628 G T CBFB Missense_Mutation p.D171Y 0.16 deleterious(0.01) possibly_damaging(0.804) TCGA-AA-A00N-01 16 67384147 67384147 C T LRRC36 Silent p.S177S 0.20 TCGA-AA-A00N-01 16 67404902 67404902 G A LRRC36 Silent p.E417E 0.24 TCGA-AA-A00N-01 16 67697612 67697612 G A ENKD1 Missense_Mutation p.R231W 0.07 deleterious(0) possibly_damaging(0.507) TCGA-AA-A00N-01 16 67709803 67709803 G A GFOD2 Missense_Mutation p.S138L 0.19 tolerated(0.28) benign(0) TCGA-AA-A00N-01 16 67963800 67963800 C A CTRL 3'UTR 0.32 TCGA-AA-A00N-01 16 68404957 68404957 C A SMPD3 Missense_Mutation p.E376D 0.23 tolerated(0.93) benign(0.002) TCGA-AA-A00N-01 16 68405615 68405615 C A SMPD3 Missense_Mutation p.R157I 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A00N-01 16 68597679 68597679 G A ZFP90 Missense_Mutation p.R330Q 0.36 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 16 68721465 68721465 G A CDH3 Missense_Mutation p.V541I 0.15 tolerated(0.39) benign(0.001) TCGA-AA-A00N-01 16 68845625 68845625 G A CDH1 Missense_Mutation p.D291N 0.24 deleterious(0.02) probably_damaging(1) TCGA-AA-A00N-01 16 69117433 69117433 G A TANGO6 Missense_Mutation p.V1052I 0.23 deleterious(0) possibly_damaging(0.854) TCGA-AA-A00N-01 16 69155381 69155381 A C CHTF8 5'UTR 0.26 TCGA-AA-A00N-01 16 69744884 69744884 T C NQO1 Missense_Mutation p.K274E 0.07 tolerated_low_confidence(0.17) benign(0.002) TCGA-AA-A00N-01 16 702037 702037 G A WDR90 Missense_Mutation p.E351K 0.31 tolerated(0.53) benign(0.001) TCGA-AA-A00N-01 16 70498942 70498942 G T FUK Intron 0.04 TCGA-AA-A00N-01 16 70895971 70895971 G A HYDIN Silent p.F3919F 0.14 TCGA-AA-A00N-01 16 70895995 70895995 G T HYDIN Missense_Mutation p.F3911L 0.18 possibly_damaging(0.682) TCGA-AA-A00N-01 16 708965 708965 G A WDR90 Missense_Mutation p.A989T 0.22 deleterious(0.01) benign(0.338) TCGA-AA-A00N-01 16 70900143 70900143 G A HYDIN Silent p.F3800F 0.11 TCGA-AA-A00N-01 16 71008183 71008183 G A HYDIN Missense_Mutation p.R1644C 0.13 probably_damaging(0.988) TCGA-AA-A00N-01 16 71103366 71103366 G T HYDIN Missense_Mutation p.S593Y 0.17 probably_damaging(0.983) TCGA-AA-A00N-01 16 71509257 71509257 C A ZNF19 Missense_Mutation p.R398I 0.15 deleterious(0.04) benign(0.005) TCGA-AA-A00N-01 16 71602062 71602062 C T TAT Silent p.E450E 0.22 TCGA-AA-A00N-01 16 71674985 71674985 T G MARVELD3 3'UTR 0.23 TCGA-AA-A00N-01 16 71689152 71689152 A G PHLPP2 Missense_Mutation p.V859A 0.28 deleterious(0.04) possibly_damaging(0.78) TCGA-AA-A00N-01 16 717548 717548 G A WDR90 Missense_Mutation p.A1736T 0.09 deleterious(0.02) probably_damaging(0.96) TCGA-AA-A00N-01 16 71768554 71768554 C T AP1G1 Silent p.T778T 0.20 TCGA-AA-A00N-01 16 71808401 71808401 A G AP1G1 Missense_Mutation p.V99A 0.19 tolerated(0.35) benign(0.017) TCGA-AA-A00N-01 16 71977980 71977980 C A PKD1L3 RNA 0.03 TCGA-AA-A00N-01 16 71988200 71988200 T C PKD1L3 Intron 0.31 TCGA-AA-A00N-01 16 72016010 72016010 A G PKD1L3 RNA 0.20 TCGA-AA-A00N-01 16 72130091 72130091 G A DHX38 Missense_Mutation p.R12Q 0.15 deleterious_low_confidence(0.01) benign(0.045) TCGA-AA-A00N-01 16 72845844 72845844 G A ZFHX3 Missense_Mutation p.S1208L 0.19 benign(0.005) TCGA-AA-A00N-01 16 74376142 74376142 C T RP11-252A24.2 RNA 0.19 TCGA-AA-A00N-01 16 74425410 74425410 C A NPIPB15 Missense_Mutation p.S255Y 0.09 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-AA-A00N-01 16 74452129 74452129 C T CLEC18B Missense_Mutation p.S95N 0.13 tolerated(0.25) benign(0.008) TCGA-AA-A00N-01 16 74487188 74487188 C A GLG1 Missense_Mutation p.M1139I 0.22 tolerated(0.39) benign(0.008) TCGA-AA-A00N-01 16 74671831 74671831 C T RFWD3 Missense_Mutation p.E373K 0.20 deleterious(0.01) benign(0.06) TCGA-AA-A00N-01 16 75258678 75258678 G A CTRB1 Missense_Mutation p.D236N 0.13 tolerated(0.13) benign(0.002) TCGA-AA-A00N-01 16 75327793 75327793 G A CFDP1 3'UTR 0.40 TCGA-AA-A00N-01 16 75563029 75563029 C A CHST5 3'UTR 0.16 TCGA-AA-A00N-01 16 76555187 76555187 T G CNTNAP4 Missense_Mutation p.F766C 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 16 767165 767165 G A METRN Silent p.P220P 0.19 TCGA-AA-A00N-01 16 77232019 77232019 C T MON1B Silent p.F486F 0.26 TCGA-AA-A00N-01 16 77396073 77396073 C A ADAMTS18 Missense_Mutation p.R382I 0.23 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 16 7759066 7759066 G A RBFOX1 Missense_Mutation p.R356Q 0.29 deleterious(0) possibly_damaging(0.834) TCGA-AA-A00N-01 16 7760762 7760762 A C RBFOX1 3'UTR 0.06 TCGA-AA-A00N-01 16 78198085 78198085 G A WWOX Missense_Mutation p.E139K 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 16 81095179 81095179 C T C16orf46 Missense_Mutation p.D259N 0.18 tolerated(0.06) benign(0.006) TCGA-AA-A00N-01 16 81175066 81175066 C T PKD1L2 RNA 0.19 TCGA-AA-A00N-01 16 81213274 81213274 C A PKD1L2 Nonsense_Mutation p.E61* 0.23 TCGA-AA-A00N-01 16 81295941 81295941 C T BCMO1 Intron 0.30 TCGA-AA-A00N-01 16 81397413 81397413 C T GAN Silent p.F367F 0.24 TCGA-AA-A00N-01 16 81942093 81942093 G A PLCG2 Missense_Mutation p.E544K 0.20 deleterious(0) probably_damaging(0.921) TCGA-AA-A00N-01 16 81968078 81968078 C T PLCG2 Silent p.I928I 0.17 TCGA-AA-A00N-01 16 820905 820905 T C MSLNL Missense_Mutation p.Y827C 0.13 probably_damaging(0.996) TCGA-AA-A00N-01 16 82660708 82660708 G T CDH13 Nonsense_Mutation p.E16* 0.18 TCGA-AA-A00N-01 16 830204 830204 G A MSLNL Missense_Mutation p.A266V 0.30 possibly_damaging(0.866) TCGA-AA-A00N-01 16 83998925 83998925 C T OSGIN1 Silent p.F249F 0.41 TCGA-AA-A00N-01 16 84270591 84270591 C A KCNG4 Missense_Mutation p.R167S 0.08 tolerated(0.19) benign(0.036) TCGA-AA-A00N-01 16 844133 844133 G A CHTF18 Missense_Mutation p.A628T 0.35 deleterious(0.05) benign(0.037) TCGA-AA-A00N-01 16 84695421 84695421 C T KLHL36 Silent p.F511F 0.11 TCGA-AA-A00N-01 16 84797699 84797699 G A USP10 Silent p.T554T 0.05 TCGA-AA-A00N-01 16 84801836 84801836 A G USP10 Missense_Mutation p.T624A 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-AA-A00N-01 16 84888423 84888423 T C CRISPLD2 Silent p.L233L 0.20 TCGA-AA-A00N-01 16 85942616 85942616 G A IRF8 Silent p.G65G 0.18 TCGA-AA-A00N-01 16 86614510 86614510 A G FOXL1 3'UTR 0.19 TCGA-AA-A00N-01 16 86614945 86614945 T G FOXL1 3'UTR 0.34 TCGA-AA-A00N-01 16 87960372 87960372 C T CA5A Missense_Mutation p.D108N 0.24 deleterious(0) probably_damaging(0.984) TCGA-AA-A00N-01 16 87970045 87970045 C T CA5A Silent p.R4R 0.23 TCGA-AA-A00N-01 16 88110198 88110198 G A BANP Silent p.T497T 0.14 TCGA-AA-A00N-01 16 88643534 88643534 G A ZC3H18 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) unknown(0) TCGA-AA-A00N-01 16 88677932 88677932 C T ZC3H18 Missense_Mutation p.P488L 0.21 deleterious_low_confidence(0.05) unknown(0) TCGA-AA-A00N-01 16 88721630 88721630 T C MVD Missense_Mutation p.N292D 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 16 88800882 88800882 C T PIEZO1 Missense_Mutation p.G688S 0.19 tolerated(0.22) probably_damaging(1) TCGA-AA-A00N-01 16 9004624 9004624 T C USP7 Missense_Mutation p.D380G 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A00N-01 16 90161040 90161040 C A TUBB8P7 Intron 0.16 TCGA-AA-A00N-01 16 9858098 9858098 G A GRIN2A Silent p.V1101V 0.19 TCGA-AA-A00N-01 17 10209878 10209878 C A MYH13 Missense_Mutation p.K1788N 0.25 deleterious(0) benign(0.229) TCGA-AA-A00N-01 17 10222127 10222127 C T MYH13 Missense_Mutation p.E1240K 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A00N-01 17 10235473 10235473 C A MYH13 Missense_Mutation p.E747D 0.20 deleterious(0.01) benign(0.258) TCGA-AA-A00N-01 17 10258071 10258071 C T MYH13 Missense_Mutation p.D311N 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-AA-A00N-01 17 10258451 10258451 C T MYH13 Missense_Mutation p.R251Q 0.29 deleterious(0) benign(0.113) TCGA-AA-A00N-01 17 10369673 10369673 C T MYH4 Missense_Mutation p.E89K 0.26 deleterious(0.02) benign(0.086) TCGA-AA-A00N-01 17 10419767 10419767 C T MYH1 Missense_Mutation p.E65K 0.06 tolerated(0.29) possibly_damaging(0.463) TCGA-AA-A00N-01 17 10430257 10430257 T G MYH2 Missense_Mutation p.K1330Q 0.16 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 17 10433205 10433205 C A MYH2 Missense_Mutation p.D962Y 0.26 deleterious(0) probably_damaging(0.967) TCGA-AA-A00N-01 17 10451105 10451105 C T MYH2 Missense_Mutation p.E45K 0.30 tolerated(0.07) benign(0.201) TCGA-AA-A00N-01 17 10533730 10533730 C T MYH3 Missense_Mutation p.A1778T 0.16 deleterious(0.04) benign(0.006) TCGA-AA-A00N-01 17 10535996 10535996 C T MYH3 Missense_Mutation p.E1585K 0.24 deleterious(0.02) benign(0.004) TCGA-AA-A00N-01 17 10541530 10541530 C T MYH3 Missense_Mutation p.E1187K 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A00N-01 17 10547679 10547679 C T MYH3 Missense_Mutation p.E467K 0.14 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 17 10554891 10554891 C T MYH3 Missense_Mutation p.R148H 0.07 deleterious(0.01) possibly_damaging(0.886) TCGA-AA-A00N-01 17 11145163 11145163 T C SHISA6 Missense_Mutation p.C142R 0.12 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 17 11554404 11554404 G T DNAH9 Nonsense_Mutation p.E706* 0.26 TCGA-AA-A00N-01 17 11671788 11671788 G T DNAH9 Nonsense_Mutation p.E2397* 0.14 TCGA-AA-A00N-01 17 11696896 11696896 G A DNAH9 Missense_Mutation p.R2713Q 0.27 probably_damaging(0.96) TCGA-AA-A00N-01 17 11696940 11696940 T G DNAH9 Missense_Mutation p.F2728V 0.19 possibly_damaging(0.616) TCGA-AA-A00N-01 17 11701105 11701105 C T DNAH9 Silent p.R2805R 0.17 TCGA-AA-A00N-01 17 11797742 11797742 C T DNAH9 Nonsense_Mutation p.R3779* 0.22 TCGA-AA-A00N-01 17 1268292 1268292 C A YWHAE Missense_Mutation p.R42I 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.734) TCGA-AA-A00N-01 17 14249038 14249038 A C HS3ST3B1 3'UTR 0.10 TCGA-AA-A00N-01 17 15207441 15207441 C T TEKT3 Missense_Mutation p.D429N 0.21 tolerated(0.06) benign(0.027) TCGA-AA-A00N-01 17 15619968 15619968 C T ZNF286A Silent p.S310S 0.05 TCGA-AA-A00N-01 17 16056687 16056687 T G NCOR1 Missense_Mutation p.K252T 0.05 probably_damaging(0.997) TCGA-AA-A00N-01 17 16527223 16527223 T C ZNF624 Missense_Mutation p.H326R 0.16 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 17 16612761 16612761 A C CCDC144A Missense_Mutation p.N464H 0.06 tolerated(0.12) possibly_damaging(0.902) TCGA-AA-A00N-01 17 16665751 16665751 C T CCDC144A Missense_Mutation p.S1264L 0.28 tolerated(0.27) benign(0.134) TCGA-AA-A00N-01 17 16701676 16701676 C A CCDC144A 3'UTR 0.21 TCGA-AA-A00N-01 17 17118323 17118323 A G FLCN Missense_Mutation p.V505A 0.19 tolerated(0.1) benign(0.015) TCGA-AA-A00N-01 17 17720596 17720596 C T SREBF1 Missense_Mutation p.R557H 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-AA-A00N-01 17 17751073 17751073 C A TOM1L2 Missense_Mutation p.R467I 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 17 17957467 17957467 C T GID4 Silent p.F175F 0.19 TCGA-AA-A00N-01 17 18023944 18023944 C T MYO15A Silent p.F610F 0.22 TCGA-AA-A00N-01 17 18039939 18039939 C T MYO15A Missense_Mutation p.A1573V 0.14 unknown(0) TCGA-AA-A00N-01 17 18066609 18066609 C T MYO15A Missense_Mutation p.R3222C 0.18 unknown(0) TCGA-AA-A00N-01 17 18138227 18138227 G A LLGL1 Missense_Mutation p.R327Q 0.23 tolerated(0.9) benign(0.006) TCGA-AA-A00N-01 17 18332387 18332387 G A KRT17P2 Intron 0.31 TCGA-AA-A00N-01 17 18422913 18422913 G A FAM106A 3'Flank 0.25 TCGA-AA-A00N-01 17 18541185 18541185 G A TBC1D28 Silent p.F163F 0.23 TCGA-AA-A00N-01 17 19559758 19559758 C T ALDH3A2 Missense_Mutation p.T184M 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 17 19683912 19683912 A C ULK2 Missense_Mutation p.F930C 0.17 tolerated(0.11) probably_damaging(0.943) TCGA-AA-A00N-01 17 20130840 20130840 G T SPECC1 Missense_Mutation p.D660Y 0.05 deleterious(0) possibly_damaging(0.835) TCGA-AA-A00N-01 17 20406490 20406490 G A RP11-434D2.7 3'Flank 0.30 TCGA-AA-A00N-01 17 20906379 20906379 G A USP22 Silent p.L515L 0.18 TCGA-AA-A00N-01 17 21101654 21101654 C T TMEM11 Missense_Mutation p.E188K 0.17 tolerated(0.09) benign(0.044) TCGA-AA-A00N-01 17 21319420 21319420 G A KCNJ12 Missense_Mutation p.D256N 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-AA-A00N-01 17 21731393 21731393 C T UBBP4 Intron 0.06 TCGA-AA-A00N-01 17 2201187 2201187 A G SMG6 Silent p.I670I 0.18 TCGA-AA-A00N-01 17 2275683 2275683 G A SGSM2 Silent p.S563S 0.20 TCGA-AA-A00N-01 17 26658969 26658969 C A IFT20 Nonsense_Mutation p.E41* 0.18 TCGA-AA-A00N-01 17 26668332 26668332 C T TNFAIP1 Missense_Mutation p.L149F 0.20 deleterious(0.02) probably_damaging(0.964) TCGA-AA-A00N-01 17 26675082 26675082 T G POLDIP2 3'UTR 0.17 TCGA-AA-A00N-01 17 26905083 26905083 C T SPAG5 Missense_Mutation p.R1152Q 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-AA-A00N-01 17 26961746 26961746 G A KIAA0100 Silent p.L953L 0.14 TCGA-AA-A00N-01 17 27011613 27011613 C T SUPT6H Nonsense_Mutation p.R747* 0.22 TCGA-AA-A00N-01 17 27086618 27086618 C T FAM222B Missense_Mutation p.R120Q 0.29 tolerated(0.06) probably_damaging(0.947) TCGA-AA-A00N-01 17 27401439 27401439 T C TIAF1 5'UTR 0.09 TCGA-AA-A00N-01 17 27614198 27614198 G A NUFIP2 Nonsense_Mutation p.R272* 0.21 TCGA-AA-A00N-01 17 27958454 27958454 T C SSH2 Missense_Mutation p.H1226R 0.16 tolerated_low_confidence(0.26) benign(0.002) TCGA-AA-A00N-01 17 27977745 27977745 G A SSH2 Missense_Mutation p.R358W 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 28545862 28545862 C T SLC6A4 Missense_Mutation p.R144Q 0.19 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 17 28789000 28789000 G T CPD Missense_Mutation p.G1246C 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 28964410 28964410 T G LRRC37BP1 RNA 0.07 TCGA-AA-A00N-01 17 29170972 29170972 G A ATAD5 Silent p.K761K 0.18 TCGA-AA-A00N-01 17 29325767 29325767 G A RNF135 Missense_Mutation p.R286H 0.24 tolerated(0.56) benign(0.001) TCGA-AA-A00N-01 17 29579981 29579981 A C NF1 Missense_Mutation p.K1379T 0.17 deleterious_low_confidence(0.05) probably_damaging(0.988) TCGA-AA-A00N-01 17 29701167 29701167 C T NF1 Silent p.I2838I 0.19 TCGA-AA-A00N-01 17 29848945 29848945 G A RAB11FIP4 Silent p.T257T 0.24 TCGA-AA-A00N-01 17 3030180 3030180 G A OR1G1 Silent p.F222F 0.14 TCGA-AA-A00N-01 17 30534039 30534039 G A RHOT1 Silent p.R509R 0.20 TCGA-AA-A00N-01 17 30791108 30791108 G T PSMD11 Missense_Mutation p.E120D 0.28 deleterious(0.02) benign(0.011) TCGA-AA-A00N-01 17 31039083 31039083 G A MYO1D Nonsense_Mutation p.R682* 0.16 TCGA-AA-A00N-01 17 32954043 32954043 C T TMEM132E Missense_Mutation p.P232L 0.11 tolerated(0.11) benign(0.017) TCGA-AA-A00N-01 17 33290104 33290104 T C ZNF830 3'UTR 0.07 TCGA-AA-A00N-01 17 33323654 33323654 A G LIG3 Missense_Mutation p.D602G 0.17 tolerated(1) benign(0.001) TCGA-AA-A00N-01 17 33339131 33339131 A G RFFL Silent p.C316C 0.25 TCGA-AA-A00N-01 17 33475409 33475409 G A UNC45B Missense_Mutation p.A43T 0.10 deleterious(0) probably_damaging(0.963) TCGA-AA-A00N-01 17 3352324 3352324 G A SPATA22 Missense_Mutation p.S150L 0.24 tolerated(0.71) benign(0) TCGA-AA-A00N-01 17 33585842 33585842 C T SLFN5 Nonsense_Mutation p.R45* 0.21 TCGA-AA-A00N-01 17 33586247 33586247 C T SLFN5 Missense_Mutation p.R180W 0.17 deleterious(0.01) possibly_damaging(0.613) TCGA-AA-A00N-01 17 33591815 33591815 G A SLFN5 Silent p.K584K 0.06 TCGA-AA-A00N-01 17 33680076 33680076 C T SLFN11 Missense_Mutation p.E669K 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 3370789 3370789 T C SPATA22 Missense_Mutation p.N35D 0.04 deleterious(0.03) possibly_damaging(0.731) TCGA-AA-A00N-01 17 33749528 33749528 C T SLFN12 Missense_Mutation p.E174K 0.18 deleterious(0.01) possibly_damaging(0.787) TCGA-AA-A00N-01 17 33750083 33750083 C A SLFN12 5'UTR 0.12 TCGA-AA-A00N-01 17 33767822 33767822 G T SLFN13 Missense_Mutation p.A829E 0.06 tolerated(0.25) benign(0.022) TCGA-AA-A00N-01 17 33806413 33806413 C A SLFN12L Missense_Mutation p.K272N 0.40 deleterious(0.03) possibly_damaging(0.804) TCGA-AA-A00N-01 17 33879986 33879986 C A SLFN14 Missense_Mutation p.R556I 0.24 deleterious(0) possibly_damaging(0.499) TCGA-AA-A00N-01 17 33977718 33977718 C A AP2B1 Missense_Mutation p.S569Y 0.05 deleterious(0) benign(0.142) TCGA-AA-A00N-01 17 34079506 34079506 G A GAS2L2 Nonsense_Mutation p.R122* 0.26 TCGA-AA-A00N-01 17 34182058 34182058 A G C17orf66 3'UTR 0.20 TCGA-AA-A00N-01 17 34182059 34182059 G A C17orf66 3'UTR 0.19 TCGA-AA-A00N-01 17 34234247 34234247 G T AC015849.16 RNA 0.15 TCGA-AA-A00N-01 17 34313637 34313637 C T CCL14 Missense_Mutation p.A17T 0.51 tolerated(0.49) benign(0.072) TCGA-AA-A00N-01 17 34499227 34499227 G A TBC1D3B Nonsense_Mutation p.R162* 0.05 TCGA-AA-A00N-01 17 34935764 34935764 G A GGNBP2 Missense_Mutation p.R312Q 0.16 deleterious(0) possibly_damaging(0.905) TCGA-AA-A00N-01 17 34937887 34937887 G T GGNBP2 Missense_Mutation p.K378N 0.25 tolerated(0.06) probably_damaging(0.994) TCGA-AA-A00N-01 17 35343916 35343916 G A AATF Missense_Mutation p.S278N 0.25 tolerated(0.15) benign(0.133) TCGA-AA-A00N-01 17 35486386 35486386 A T ACACA Missense_Mutation p.L1950Q 0.28 tolerated(0.07) probably_damaging(0.943) TCGA-AA-A00N-01 17 3552187 3552187 C T CTNS Missense_Mutation p.R63C 0.40 tolerated(0.08) possibly_damaging(0.594) TCGA-AA-A00N-01 17 3561358 3561358 C T CTNS Silent p.F247F 0.08 TCGA-AA-A00N-01 17 3566992 3566992 C T TAX1BP3 3'UTR 0.17 TCGA-AA-A00N-01 17 3599225 3599225 C T P2RX5 Silent p.K25K 0.25 TCGA-AA-A00N-01 17 3632789 3632789 G A ITGAE Silent p.F965F 0.26 TCGA-AA-A00N-01 17 36483171 36483171 G A GPR179 Missense_Mutation p.S2094F 0.16 tolerated(0.09) benign(0.035) TCGA-AA-A00N-01 17 36486162 36486162 G T GPR179 Missense_Mutation p.S1097Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 17 36486750 36486750 G A GPR179 Missense_Mutation p.A901V 0.24 tolerated(0.2) probably_damaging(0.983) TCGA-AA-A00N-01 17 36491131 36491131 C T GPR179 Missense_Mutation p.R477Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 17 36646362 36646362 C T ARHGAP23 Silent p.I1002I 0.26 TCGA-AA-A00N-01 17 3665244 3665244 C A ITGAE Nonsense_Mutation p.G94* 0.08 TCGA-AA-A00N-01 17 36708268 36708268 C T SRCIN1 Missense_Mutation p.E861K 0.19 deleterious(0.02) benign(0.046) TCGA-AA-A00N-01 17 36719590 36719590 G A SRCIN1 Missense_Mutation p.R237C 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 17 3729109 3729109 A G C17orf85 Silent p.D213D 0.19 TCGA-AA-A00N-01 17 37316883 37316883 G A ARL5C Missense_Mutation p.S151L 0.24 tolerated(0.18) benign(0.192) TCGA-AA-A00N-01 17 37341054 37341054 A G CACNB1 Missense_Mutation p.S238P 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 17 37369801 37369801 G A STAC2 Missense_Mutation p.R318W 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 37565013 37565013 C T MED1 Missense_Mutation p.G1154D 0.26 deleterious_low_confidence(0) unknown(0) TCGA-AA-A00N-01 17 37949076 37949076 C A IKZF3 Nonsense_Mutation p.E92* 0.27 TCGA-AA-A00N-01 17 3848043 3848043 C T ATP2A3 Silent p.A414A 0.17 TCGA-AA-A00N-01 17 38813721 38813721 G T KRT222 Missense_Mutation p.S181Y 0.19 tolerated(0.2) benign(0.352) TCGA-AA-A00N-01 17 38925240 38925240 G A KRT26 Nonsense_Mutation p.R360* 0.08 TCGA-AA-A00N-01 17 38936691 38936691 G A KRT27 Missense_Mutation p.A182V 0.07 deleterious(0.04) possibly_damaging(0.632) TCGA-AA-A00N-01 17 39122694 39122694 G T KRT39 Missense_Mutation p.L139I 0.21 tolerated(0.29) benign(0.01) TCGA-AA-A00N-01 17 39211041 39211041 C T KRTAP2-2 3'UTR 0.31 TCGA-AA-A00N-01 17 39240829 39240829 T C KRTAP4-7 Missense_Mutation p.V124A 0.21 tolerated(0.06) unknown(0) TCGA-AA-A00N-01 17 39296219 39296219 A G KRTAP4-6 Missense_Mutation p.V174A 0.09 tolerated(0.07) unknown(0) TCGA-AA-A00N-01 17 39305287 39305287 C T KRTAP4-5 3'UTR 0.18 TCGA-AA-A00N-01 17 39383343 39383343 G A KRTAP9-2 Missense_Mutation p.R146H 0.23 tolerated(0.1) benign(0.145) TCGA-AA-A00N-01 17 39406681 39406681 C T KRTAP9-4 3'UTR 0.20 TCGA-AA-A00N-01 17 39537968 39537968 C T KRT34 Missense_Mutation p.S185N 0.27 deleterious(0.01) benign(0.01) TCGA-AA-A00N-01 17 3957382 3957382 G A ZZEF1 Silent p.S1801S 0.35 TCGA-AA-A00N-01 17 39580392 39580392 C A KRT37 Missense_Mutation p.E128D 0.14 tolerated(0.31) benign(0.015) TCGA-AA-A00N-01 17 39645746 39645746 C T KRT36 Missense_Mutation p.R124H 0.22 deleterious(0.04) possibly_damaging(0.727) TCGA-AA-A00N-01 17 39768919 39768919 A G KRT16 Missense_Mutation p.F8L 0.11 tolerated(0.07) unknown(0) TCGA-AA-A00N-01 17 39888992 39888992 C A HAP1 Silent p.V176V 0.19 TCGA-AA-A00N-01 17 40001806 40001806 G A KLHL10 Silent p.P371P 0.20 TCGA-AA-A00N-01 17 40009908 40009908 G A KLHL11 3'UTR 0.28 TCGA-AA-A00N-01 17 40011506 40011506 A C KLHL11 Missense_Mutation p.C205G 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A00N-01 17 40021358 40021358 C T KLHL11 Missense_Mutation p.R89H 0.23 tolerated(0.09) possibly_damaging(0.634) TCGA-AA-A00N-01 17 40025007 40025007 C T ACLY Missense_Mutation p.A1056T 0.18 tolerated(0.5) benign(0.024) TCGA-AA-A00N-01 17 40255679 40255679 G A DHX58 Silent p.S567S 0.19 TCGA-AA-A00N-01 17 40369257 40369257 G A STAT5B Missense_Mutation p.S434L 0.20 deleterious(0) benign(0.242) TCGA-AA-A00N-01 17 40705783 40705783 G A HSD17B1 Intron 0.19 TCGA-AA-A00N-01 17 41004685 41004685 G A AOC3 Missense_Mutation p.R442Q 0.16 deleterious(0) probably_damaging(0.972) TCGA-AA-A00N-01 17 41165103 41165103 G T IFI35 Nonsense_Mutation p.G54* 0.20 TCGA-AA-A00N-01 17 41570101 41570101 C T DHX8 Nonsense_Mutation p.R186* 0.22 TCGA-AA-A00N-01 17 41576321 41576321 T C DHX8 Silent p.I464I 0.15 TCGA-AA-A00N-01 17 41955263 41955263 T C MPP2 Missense_Mutation p.N524S 0.21 tolerated(0.07) benign(0.422) TCGA-AA-A00N-01 17 41958516 41958516 G A MPP2 Silent p.C310C 0.22 TCGA-AA-A00N-01 17 42225981 42225981 G A C17orf53 Silent p.P270P 0.12 TCGA-AA-A00N-01 17 42335367 42335367 G A SLC4A1 Silent p.F423F 0.24 TCGA-AA-A00N-01 17 42454448 42454448 G A ITGA2B Silent p.I732I 0.19 TCGA-AA-A00N-01 17 42462420 42462420 G A ITGA2B Missense_Mutation p.A232V 0.07 tolerated(0.22) benign(0.014) TCGA-AA-A00N-01 17 42743857 42743857 A G C17orf104 Missense_Mutation p.Q193R 0.19 deleterious(0) possibly_damaging(0.902) TCGA-AA-A00N-01 17 42745158 42745158 G T C17orf104 Missense_Mutation p.D627Y 0.21 deleterious(0) probably_damaging(0.929) TCGA-AA-A00N-01 17 42828176 42828176 C T DBF4B Missense_Mutation p.S468L 0.23 deleterious_low_confidence(0) benign(0) TCGA-AA-A00N-01 17 42882801 42882801 C A GJC1 Nonsense_Mutation p.E129* 0.12 TCGA-AA-A00N-01 17 42962660 42962660 A G EFTUD2 Missense_Mutation p.M105T 0.12 tolerated(0.44) benign(0) TCGA-AA-A00N-01 17 43314685 43314685 T C FMNL1 Missense_Mutation p.V254A 0.10 deleterious(0) unknown(0) TCGA-AA-A00N-01 17 43587615 43587615 G T LRRC37A4P RNA 0.18 TCGA-AA-A00N-01 17 43923445 43923445 C T SPPL2C Silent p.F391F 0.29 TCGA-AA-A00N-01 17 44073788 44073788 C T MAPT Missense_Mutation p.R529C 0.29 deleterious(0) probably_damaging(0.987) TCGA-AA-A00N-01 17 44076662 44076662 G A STH Missense_Mutation p.G6D 0.21 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AA-A00N-01 17 44115929 44115929 C A KANSL1 Missense_Mutation p.S839I 0.18 tolerated(0.07) benign(0.108) TCGA-AA-A00N-01 17 4498490 4498490 C A SMTNL2 Missense_Mutation p.A286D 0.07 tolerated(0.31) possibly_damaging(0.632) TCGA-AA-A00N-01 17 4535259 4535259 C T ALOX15 Silent p.A578A 0.19 TCGA-AA-A00N-01 17 45507355 45507355 T C EFCAB13 Intron 0.15 TCGA-AA-A00N-01 17 45517950 45517950 C T EFCAB13 Missense_Mutation p.S931L 0.05 tolerated_low_confidence(0.32) benign(0.007) TCGA-AA-A00N-01 17 45904045 45904045 T G MRPL10 Missense_Mutation p.M174L 0.19 tolerated(0.36) benign(0.14) TCGA-AA-A00N-01 17 46103838 46103838 G T COPZ2 Missense_Mutation p.L195I 0.13 tolerated(0.1) benign(0.259) TCGA-AA-A00N-01 17 46655683 46655683 A C HOXB4 5'UTR 0.29 TCGA-AA-A00N-01 17 46799100 46799100 T G PRAC1 3'UTR 0.32 TCGA-AA-A00N-01 17 46846526 46846526 C A TTLL6 Missense_Mutation p.S834I 0.24 deleterious(0.04) possibly_damaging(0.571) TCGA-AA-A00N-01 17 4685827 4685827 C T TM4SF5 Silent p.F96F 0.20 TCGA-AA-A00N-01 17 47103000 47103000 G A IGF2BP1 Missense_Mutation p.R86Q 0.10 tolerated(0.05) possibly_damaging(0.595) TCGA-AA-A00N-01 17 47288173 47288173 C T ABI3 Silent p.V29V 0.23 TCGA-AA-A00N-01 17 47299939 47299939 C T ABI3 Silent p.S321S 0.10 TCGA-AA-A00N-01 17 47390127 47390127 C A ZNF652 Missense_Mutation p.K327N 0.18 deleterious(0) possibly_damaging(0.739) TCGA-AA-A00N-01 17 47395002 47395002 C T ZNF652 Missense_Mutation p.R29H 0.20 tolerated(0.15) benign(0.001) TCGA-AA-A00N-01 17 48185752 48185752 G A PDK2 Missense_Mutation p.A278T 0.18 tolerated(0.92) possibly_damaging(0.592) TCGA-AA-A00N-01 17 48266839 48266839 G A COL1A1 Missense_Mutation p.R910C 0.33 unknown(0) TCGA-AA-A00N-01 17 48271397 48271397 G A COL1A1 Silent p.P558P 0.15 TCGA-AA-A00N-01 17 48275322 48275322 C T COL1A1 Silent p.E210E 0.21 TCGA-AA-A00N-01 17 4835894 4835894 G A GP1BA Intron 0.31 TCGA-AA-A00N-01 17 48632997 48632997 G A SPATA20 Missense_Mutation p.E795K 0.07 deleterious(0.05) benign(0.116) TCGA-AA-A00N-01 17 4910316 4910316 G A KIF1C Silent p.E424E 0.34 TCGA-AA-A00N-01 17 49238549 49238549 C T NME1 Missense_Mutation p.T111M 0.18 tolerated(0.06) probably_damaging(1) TCGA-AA-A00N-01 17 4937972 4937972 G T SLC52A1 5'UTR 0.32 TCGA-AA-A00N-01 17 4996980 4996980 A C ZFP3 3'UTR 0.14 TCGA-AA-A00N-01 17 4997135 4997135 G A ZFP3 3'UTR 0.28 TCGA-AA-A00N-01 17 4997655 4997655 C A ZFP3 3'UTR 0.24 TCGA-AA-A00N-01 17 5048806 5048806 G A USP6 Missense_Mutation p.R700Q 0.22 deleterious_low_confidence(0.01) benign(0.028) TCGA-AA-A00N-01 17 5238487 5238487 C T RABEP1 Missense_Mutation p.R126C 0.30 tolerated(0.21) benign(0.013) TCGA-AA-A00N-01 17 5392576 5392576 T G MIS12 Missense_Mutation p.L132V 0.15 tolerated(1) benign(0.013) TCGA-AA-A00N-01 17 5392784 5392784 G A MIS12 Missense_Mutation p.R201Q 0.18 tolerated(0.11) benign(0.007) TCGA-AA-A00N-01 17 54543723 54543723 C T ANKFN1 Missense_Mutation p.L525F 0.20 deleterious(0) benign(0.322) TCGA-AA-A00N-01 17 5461750 5461750 A C NLRP1 Missense_Mutation p.F756V 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 54672498 54672498 C T NOG 3'UTR 0.23 TCGA-AA-A00N-01 17 56232616 56232616 C A OR4D1 Silent p.V34V 0.29 TCGA-AA-A00N-01 17 56233261 56233261 G T OR4D1 Missense_Mutation p.M249I 0.22 tolerated(0.07) benign(0.012) TCGA-AA-A00N-01 17 56247577 56247577 T C OR4D2 Silent p.L187L 0.15 TCGA-AA-A00N-01 17 56270749 56270749 G A EPX Missense_Mutation p.R63H 0.22 tolerated(0.11) benign(0.006) TCGA-AA-A00N-01 17 56274482 56274482 G A EPX Silent p.R328R 0.20 TCGA-AA-A00N-01 17 56620915 56620915 C T C17orf47 Silent p.T211T 0.20 TCGA-AA-A00N-01 17 56809967 56809967 G T RAD51C Intron 0.21 TCGA-AA-A00N-01 17 57153052 57153052 C A TRIM37 Nonsense_Mutation p.E214* 0.17 TCGA-AA-A00N-01 17 57290667 57290667 G A SMG8 Missense_Mutation p.R828K 0.19 tolerated(0.31) probably_damaging(0.936) TCGA-AA-A00N-01 17 57644150 57644150 A C DHX40 Missense_Mutation p.E92A 0.19 deleterious(0) probably_damaging(0.949) TCGA-AA-A00N-01 17 57650573 57650573 G A DHX40 Missense_Mutation p.A175T 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 17 57759017 57759017 G T CLTC Nonsense_Mutation p.E1087* 0.21 TCGA-AA-A00N-01 17 57812772 57812772 G A VMP1 Silent p.P50P 0.21 TCGA-AA-A00N-01 17 58039939 58039939 A G RNFT1 Missense_Mutation p.Y185H 0.18 deleterious(0.03) possibly_damaging(0.533) TCGA-AA-A00N-01 17 58125680 58125680 G A HEATR6 Nonsense_Mutation p.R873* 0.16 TCGA-AA-A00N-01 17 58525148 58525148 G A APPBP2 Nonsense_Mutation p.R518* 0.16 TCGA-AA-A00N-01 17 58740668 58740668 G T PPM1D Nonsense_Mutation p.E525* 0.07 TCGA-AA-A00N-01 17 59557455 59557455 G T TBX4 Nonsense_Mutation p.E266* 0.19 TCGA-AA-A00N-01 17 59857686 59857686 G A BRIP1 Missense_Mutation p.S624L 0.15 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 59984901 59984901 C T INTS2 Missense_Mutation p.R358Q 0.25 tolerated(0.46) benign(0.107) TCGA-AA-A00N-01 17 60072620 60072620 C A MED13 Nonsense_Mutation p.E692* 0.15 TCGA-AA-A00N-01 17 60088302 60088302 C T MED13 Missense_Mutation p.E526K 0.05 tolerated(0.66) possibly_damaging(0.879) TCGA-AA-A00N-01 17 60503788 60503788 C A METTL2A Missense_Mutation p.H111N 0.06 tolerated(0.4) benign(0.001) TCGA-AA-A00N-01 17 60813284 60813284 G A MARCH10 Intron 0.10 TCGA-AA-A00N-01 17 61466108 61466108 C A TANC2 Missense_Mutation p.P861Q 0.15 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 17 61497576 61497576 C T TANC2 Silent p.F1411F 0.18 TCGA-AA-A00N-01 17 61499298 61499298 C T TANC2 Silent p.F1985F 0.16 TCGA-AA-A00N-01 17 61621013 61621013 A G KCNH6 Missense_Mutation p.N742S 0.17 tolerated(0.65) benign(0.002) TCGA-AA-A00N-01 17 61888508 61888508 G A DDX42 Missense_Mutation p.R458Q 0.18 deleterious(0) probably_damaging(0.923) TCGA-AA-A00N-01 17 61901739 61901739 C T FTSJ3 Missense_Mutation p.R317Q 0.04 deleterious(0.03) benign(0.283) TCGA-AA-A00N-01 17 62020211 62020211 G A SCN4A Silent p.F1421F 0.05 TCGA-AA-A00N-01 17 62020408 62020408 C T SCN4A Missense_Mutation p.D1356N 0.06 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 62230406 62230406 G A TEX2 Silent p.I1020I 0.05 TCGA-AA-A00N-01 17 62496154 62496154 C T DDX5 Missense_Mutation p.G578R 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.692) TCGA-AA-A00N-01 17 62533226 62533226 C T CEP95 Missense_Mutation p.A762V 0.18 tolerated(0.11) possibly_damaging(0.447) TCGA-AA-A00N-01 17 63010881 63010881 C T GNA13 Missense_Mutation p.D210N 0.26 tolerated(0.31) benign(0.001) TCGA-AA-A00N-01 17 63052586 63052586 C A GNA13 Missense_Mutation p.K42N 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A00N-01 17 6367583 6367583 G A PITPNM3 Missense_Mutation p.T688I 0.24 deleterious(0) probably_damaging(0.91) TCGA-AA-A00N-01 17 649668 649668 C T GEMIN4 Missense_Mutation p.E539K 0.22 tolerated(0.22) possibly_damaging(0.769) TCGA-AA-A00N-01 17 65116527 65116527 G A HELZ Nonsense_Mutation p.R1278* 0.05 TCGA-AA-A00N-01 17 6526885 6526885 C A KIAA0753 Nonsense_Mutation p.E278* 0.21 TCGA-AA-A00N-01 17 65343510 65343510 C T PSMD12 Missense_Mutation p.R201Q 0.19 tolerated(0.55) possibly_damaging(0.753) TCGA-AA-A00N-01 17 6589418 6589418 C T SLC13A5 3'UTR 0.17 TCGA-AA-A00N-01 17 65916200 65916200 G A BPTF Missense_Mutation p.R1833Q 0.22 probably_damaging(0.999) TCGA-AA-A00N-01 17 66033601 66033601 G A KPNA2 Missense_Mutation p.R68H 0.06 tolerated(0.19) benign(0.005) TCGA-AA-A00N-01 17 66267716 66267716 G A SLC16A6 Silent p.I195I 0.21 TCGA-AA-A00N-01 17 66339917 66339917 G A ARSG Missense_Mutation p.V131I 0.18 tolerated(0.4) benign(0.003) TCGA-AA-A00N-01 17 66881414 66881414 C T ABCA8 Missense_Mutation p.E1118K 0.14 tolerated(0.84) benign(0.015) TCGA-AA-A00N-01 17 66899514 66899514 C T ABCA8 Missense_Mutation p.R802Q 0.21 deleterious(0.01) benign(0.397) TCGA-AA-A00N-01 17 66981061 66981061 C T ABCA9 Silent p.S1448S 0.13 TCGA-AA-A00N-01 17 6704230 6704230 A T TEKT1 Missense_Mutation p.N295K 0.18 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 17 67081193 67081193 G A ABCA6 Missense_Mutation p.A1387V 0.23 tolerated(0.16) benign(0.366) TCGA-AA-A00N-01 17 67103912 67103912 T C ABCA6 Missense_Mutation p.T772A 0.23 tolerated(0.78) benign(0.001) TCGA-AA-A00N-01 17 67221481 67221481 C T ABCA10 Missense_Mutation p.A7T 0.20 tolerated(0.11) benign(0.077) TCGA-AA-A00N-01 17 67247996 67247996 C T ABCA5 Missense_Mutation p.R1476Q 0.20 tolerated(0.15) probably_damaging(0.982) TCGA-AA-A00N-01 17 67255890 67255890 T G ABCA5 Missense_Mutation p.K1230Q 0.17 tolerated(0.16) benign(0.391) TCGA-AA-A00N-01 17 67309281 67309281 T G ABCA5 Missense_Mutation p.I87L 0.22 tolerated(0.23) benign(0.056) TCGA-AA-A00N-01 17 68128832 68128832 C T KCNJ16 Missense_Mutation p.R202C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 68131014 68131014 A G KCNJ16 3'UTR 0.15 TCGA-AA-A00N-01 17 7106631 7106631 C T DLG4 Missense_Mutation p.A218T 0.22 tolerated(0.06) probably_damaging(0.997) TCGA-AA-A00N-01 17 7107081 7107081 C T DLG4 Missense_Mutation p.G132S 0.12 tolerated(0.07) probably_damaging(0.989) TCGA-AA-A00N-01 17 71197688 71197688 C T COG1 Silent p.S574S 0.15 TCGA-AA-A00N-01 17 71232497 71232497 C A C17orf80 Silent p.V292V 0.18 TCGA-AA-A00N-01 17 71389827 71389827 G A SDK2 Missense_Mutation p.S1257L 0.24 tolerated(0.54) benign(0.228) TCGA-AA-A00N-01 17 7140777 7140777 C A PHF23 Missense_Mutation p.R29I 0.22 deleterious(0) probably_damaging(0.944) TCGA-AA-A00N-01 17 7220784 7220784 T G NEURL4 Silent p.G1438G 0.27 TCGA-AA-A00N-01 17 72340466 72340466 C T KIF19 Silent p.V187V 0.18 TCGA-AA-A00N-01 17 72368475 72368475 C T GPR142 Silent p.F375F 0.18 TCGA-AA-A00N-01 17 72473639 72473639 G T CD300A Missense_Mutation p.A200S 0.07 deleterious(0) possibly_damaging(0.871) TCGA-AA-A00N-01 17 72477873 72477873 G A CD300A Silent p.T225T 0.17 TCGA-AA-A00N-01 17 7251720 7251720 G A ACAP1 Missense_Mutation p.R535H 0.23 tolerated(0.09) benign(0) TCGA-AA-A00N-01 17 72589055 72589055 C T C17orf77 3'UTR 0.27 TCGA-AA-A00N-01 17 726884 726884 G T NXN Missense_Mutation p.F200L 0.40 deleterious(0.04) benign(0.364) TCGA-AA-A00N-01 17 7286575 7286575 G A TNK1 Missense_Mutation p.R57H 0.21 deleterious(0) possibly_damaging(0.495) TCGA-AA-A00N-01 17 72927228 72927228 C A OTOP2 Missense_Mutation p.L500I 0.15 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 72943030 72943030 C T OTOP3 Silent p.I360I 0.23 TCGA-AA-A00N-01 17 7318983 7318983 C T NLGN2 Silent p.S397S 0.08 TCGA-AA-A00N-01 17 73237524 73237524 G T GGA3 Silent p.V301V 0.16 TCGA-AA-A00N-01 17 7329903 7329903 A G C17orf74 Missense_Mutation p.Y198C 0.19 tolerated(0.15) benign(0.001) TCGA-AA-A00N-01 17 73317741 73317741 T C GRB2 Missense_Mutation p.Q156R 0.17 tolerated(0.43) possibly_damaging(0.485) TCGA-AA-A00N-01 17 73513243 73513243 G A TSEN54 Missense_Mutation p.G96D 0.08 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 17 7359133 7359133 C T CHRNB1 Missense_Mutation p.A413V 0.20 tolerated(0.49) benign(0.014) TCGA-AA-A00N-01 17 73698641 73698641 C T SAP30BP Missense_Mutation p.R160W 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 17 73832091 73832091 A G UNC13D Splice_Site p.X515_splice 0.19 TCGA-AA-A00N-01 17 74326170 74326170 A G PRPSAP1 Missense_Mutation p.Y197H 0.10 tolerated(0.07) benign(0.225) TCGA-AA-A00N-01 17 74729688 74729688 G A METTL23 Missense_Mutation p.E165K 0.21 tolerated(0.48) benign(0.04) TCGA-AA-A00N-01 17 7507344 7507344 G A FXR2 Missense_Mutation p.R95W 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 17 75196590 75196590 C T SEC14L1 Missense_Mutation p.R282W 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 17 7637588 7637588 A C DNAH2 Missense_Mutation p.K239T 0.23 probably_damaging(0.978) TCGA-AA-A00N-01 17 76421439 76421439 G A DNAH17 Missense_Mutation p.L4400F 0.21 possibly_damaging(0.654) TCGA-AA-A00N-01 17 76430206 76430206 G A DNAH17 Silent p.F4037F 0.19 TCGA-AA-A00N-01 17 76451801 76451801 G A DNAH17 Silent p.Y3351Y 0.08 TCGA-AA-A00N-01 17 76486830 76486830 A G DNAH17 Missense_Mutation p.S2243P 0.08 probably_damaging(0.999) TCGA-AA-A00N-01 17 76565313 76565313 C T DNAH17 Missense_Mutation p.E407K 0.27 benign(0.009) TCGA-AA-A00N-01 17 7678157 7678157 C T DNAH2 Nonsense_Mutation p.R1528* 0.04 TCGA-AA-A00N-01 17 7680919 7680919 C A DNAH2 Missense_Mutation p.D1738E 0.22 benign(0.007) TCGA-AA-A00N-01 17 7682664 7682664 G A DNAH2 Missense_Mutation p.G1882D 0.05 benign(0.261) TCGA-AA-A00N-01 17 7689479 7689479 G A DNAH2 Missense_Mutation p.G2056D 0.26 benign(0.063) TCGA-AA-A00N-01 17 77043760 77043760 G A C1QTNF1 Missense_Mutation p.A146T 0.31 deleterious(0) possibly_damaging(0.892) TCGA-AA-A00N-01 17 7722627 7722627 T C DNAH2 Missense_Mutation p.I3639T 0.18 possibly_damaging(0.574) TCGA-AA-A00N-01 17 7736780 7736780 C T DNAH2 Missense_Mutation p.R4405W 0.16 probably_damaging(0.953) TCGA-AA-A00N-01 17 77768792 77768792 G T CBX8 Missense_Mutation p.A271D 0.18 tolerated(0.25) possibly_damaging(0.665) TCGA-AA-A00N-01 17 77918744 77918744 G A TBC1D16 Missense_Mutation p.A624V 0.22 tolerated(0.11) probably_damaging(1) TCGA-AA-A00N-01 17 7792380 7792380 C A CHD3 Intron 0.08 TCGA-AA-A00N-01 17 7801400 7801400 G T CHD3 Missense_Mutation p.K736N 0.26 possibly_damaging(0.728) TCGA-AA-A00N-01 17 7803967 7803967 C T CHD3 Missense_Mutation p.R1025W 0.24 possibly_damaging(0.898) TCGA-AA-A00N-01 17 78162243 78162243 A T CARD14 Missense_Mutation p.E248V 0.20 tolerated(0.1) probably_damaging(0.919) TCGA-AA-A00N-01 17 78237420 78237420 G T RNF213 5'UTR 0.23 TCGA-AA-A00N-01 17 7851025 7851025 G T CNTROB Missense_Mutation p.K710N 0.28 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-AA-A00N-01 17 78797093 78797093 G T RPTOR Intron 0.20 TCGA-AA-A00N-01 17 79090465 79090465 C T BAIAP2 3'UTR 0.25 TCGA-AA-A00N-01 17 79202746 79202746 G A ENTHD2 Silent p.F520F 0.21 TCGA-AA-A00N-01 17 79495546 79495546 G A FSCN2 5'Flank 0.10 TCGA-AA-A00N-01 17 7950318 7950318 C T ALOX15B Missense_Mutation p.R461W 0.22 deleterious(0.01) probably_damaging(0.932) TCGA-AA-A00N-01 17 79866900 79866900 C A PCYT2 Missense_Mutation p.K64N 0.27 tolerated(0.07) benign(0.049) TCGA-AA-A00N-01 17 80012479 80012479 G A GPS1 Silent p.A174A 0.28 TCGA-AA-A00N-01 17 8018996 8018996 A C ALOXE3 Missense_Mutation p.I253M 0.27 tolerated(0.11) benign(0.031) TCGA-AA-A00N-01 17 8021330 8021330 C T ALOXE3 Silent p.G125G 0.27 TCGA-AA-A00N-01 17 80333170 80333170 G A UTS2R Missense_Mutation p.D324N 0.34 deleterious(0) benign(0.042) TCGA-AA-A00N-01 17 80422207 80422207 C T NARF Silent p.S51S 0.22 TCGA-AA-A00N-01 17 80758742 80758742 G A TBCD Missense_Mutation p.A274T 0.21 tolerated(0.24) benign(0.033) TCGA-AA-A00N-01 17 80758785 80758785 G A TBCD Missense_Mutation p.S288N 0.15 tolerated(0.23) benign(0.414) TCGA-AA-A00N-01 17 8077865 8077865 G A TMEM107 Missense_Mutation p.T115M 0.19 tolerated(0.23) benign(0.071) TCGA-AA-A00N-01 17 80788323 80788323 C T ZNF750 Missense_Mutation p.A623T 0.25 tolerated(0.68) benign(0.003) TCGA-AA-A00N-01 17 80790070 80790070 A C ZNF750 Silent p.S87S 0.20 TCGA-AA-A00N-01 17 80887065 80887065 G A TBCD Missense_Mutation p.V924M 0.15 deleterious(0.03) benign(0.378) TCGA-AA-A00N-01 17 8216438 8216438 G A ARHGEF15 Missense_Mutation p.R267H 0.15 deleterious(0) probably_damaging(0.984) TCGA-AA-A00N-01 17 8722471 8722471 T C PIK3R6 Missense_Mutation p.D641G 0.19 deleterious(0.01) benign(0.297) TCGA-AA-A00N-01 17 8790983 8790983 C T PIK3R5 Missense_Mutation p.R545H 0.21 tolerated(0.25) benign(0.013) TCGA-AA-A00N-01 17 904260 904260 A C TIMM22 Missense_Mutation p.K173Q 0.06 deleterious(0.02) benign(0.119) TCGA-AA-A00N-01 17 9066190 9066190 C T NTN1 Missense_Mutation p.S360L 0.20 deleterious(0.03) possibly_damaging(0.593) TCGA-AA-A00N-01 17 9281920 9281920 G A STX8 Missense_Mutation p.R198C 0.16 tolerated(0.1) probably_damaging(0.972) TCGA-AA-A00N-01 17 9471725 9471725 C T STX8 Missense_Mutation p.R27Q 0.19 deleterious(0.05) benign(0.034) TCGA-AA-A00N-01 17 9808279 9808279 G A RCVRN Silent p.F73F 0.24 TCGA-AA-A00N-01 18 10671583 10671583 T C PIEZO2 Missense_Mutation p.I2734V 0.21 deleterious(0.03) possibly_damaging(0.556) TCGA-AA-A00N-01 18 10696504 10696504 G T PIEZO2 Missense_Mutation p.F2174L 0.31 deleterious(0) possibly_damaging(0.644) TCGA-AA-A00N-01 18 11753891 11753891 C T GNAL Nonsense_Mutation p.R191* 0.15 TCGA-AA-A00N-01 18 11824922 11824922 C A GNAL Missense_Mutation p.F210L 0.29 tolerated(0.05) probably_damaging(0.989) TCGA-AA-A00N-01 18 118419 118419 C T ROCK1P1 RNA 0.04 TCGA-AA-A00N-01 18 11852606 11852606 G T CHMP1B 3'UTR 0.23 TCGA-AA-A00N-01 18 11853781 11853781 T C CHMP1B 3'UTR 0.14 TCGA-AA-A00N-01 18 11884577 11884577 C T MPPE1 Missense_Mutation p.R353H 0.24 tolerated(0.54) benign(0.004) TCGA-AA-A00N-01 18 12311000 12311000 C T TUBB6 Silent p.S75S 0.26 TCGA-AA-A00N-01 18 12337383 12337383 C A AFG3L2 Missense_Mutation p.R711I 0.29 deleterious(0.01) benign(0.093) TCGA-AA-A00N-01 18 12546841 12546841 T G SPIRE1 Missense_Mutation p.E145D 0.30 deleterious(0) probably_damaging(0.973) TCGA-AA-A00N-01 18 13059162 13059162 C A CEP192 Missense_Mutation p.L1447I 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 18 13826099 13826099 G A MC5R Missense_Mutation p.R112H 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 18 14106223 14106223 T C ZNF519 Missense_Mutation p.T106A 0.07 tolerated(0.14) benign(0.004) TCGA-AA-A00N-01 18 14478589 14478589 G A CXADRP3 RNA 0.18 TCGA-AA-A00N-01 18 14787086 14787086 C A ANKRD30B Missense_Mutation p.S574Y 0.18 tolerated(0.12) probably_damaging(0.989) TCGA-AA-A00N-01 18 18983893 18983893 C T GREB1L Missense_Mutation p.S257L 0.19 deleterious(0.03) benign(0.006) TCGA-AA-A00N-01 18 19080080 19080080 A G GREB1L Missense_Mutation p.D1261G 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 18 19080100 19080100 C T GREB1L Silent p.L1268L 0.23 TCGA-AA-A00N-01 18 20606231 20606231 G T RBBP8 3'UTR 0.22 TCGA-AA-A00N-01 18 21109380 21109380 T A NPC1 3'Flank 0.36 TCGA-AA-A00N-01 18 21110352 21110352 G A C18orf8 Missense_Mutation p.R557Q 0.20 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 18 21451576 21451576 C T LAMA3 Missense_Mutation p.A1650V 0.20 benign(0.158) TCGA-AA-A00N-01 18 21948310 21948310 T C OSBPL1A Missense_Mutation p.T50A 0.07 deleterious(0.04) possibly_damaging(0.533) TCGA-AA-A00N-01 18 22008838 22008838 G A IMPACT Missense_Mutation p.M57I 0.23 tolerated(1) benign(0.004) TCGA-AA-A00N-01 18 22030789 22030789 A G IMPACT Missense_Mutation p.D314G 0.20 deleterious_low_confidence(0.04) benign(0.24) TCGA-AA-A00N-01 18 22805217 22805217 C T ZNF521 Missense_Mutation p.D889N 0.05 tolerated(0.35) possibly_damaging(0.893) TCGA-AA-A00N-01 18 24496653 24496653 T C CHST9 Missense_Mutation p.Y301C 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 18 24496890 24496890 G A CHST9 Missense_Mutation p.A222V 0.17 tolerated(0.25) possibly_damaging(0.811) TCGA-AA-A00N-01 18 252570 252570 C T THOC1 Missense_Mutation p.E216K 0.22 tolerated(0.15) possibly_damaging(0.532) TCGA-AA-A00N-01 18 25582963 25582963 C T CDH2 Missense_Mutation p.E340K 0.23 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 18 2688662 2688662 G A SMCHD1 Missense_Mutation p.E264K 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 18 2747526 2747526 C T SMCHD1 Missense_Mutation p.P1270S 0.21 tolerated(0.75) benign(0.11) TCGA-AA-A00N-01 18 2750424 2750424 C A SMCHD1 Missense_Mutation p.L1362I 0.21 tolerated(0.26) probably_damaging(0.954) TCGA-AA-A00N-01 18 28672066 28672066 T G DSC2 Missense_Mutation p.K118Q 0.22 deleterious(0.04) benign(0.065) TCGA-AA-A00N-01 18 28720060 28720060 C A DSC1 Nonsense_Mutation p.E489* 0.25 TCGA-AA-A00N-01 18 28722128 28722128 T G DSC1 Missense_Mutation p.E365A 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 18 28926100 28926100 C A DSG1 Missense_Mutation p.S680Y 0.28 deleterious(0.02) benign(0.302) TCGA-AA-A00N-01 18 29044159 29044159 G A DSG3 Missense_Mutation p.R362Q 0.19 tolerated(1) benign(0.003) TCGA-AA-A00N-01 18 29055907 29055907 T G DSG3 Missense_Mutation p.F895C 0.26 tolerated(0.18) benign(0) TCGA-AA-A00N-01 18 29126062 29126062 G A DSG2 Missense_Mutation p.E905K 0.26 tolerated(0.14) probably_damaging(0.998) TCGA-AA-A00N-01 18 29432455 29432455 G A TRAPPC8 Missense_Mutation p.S1172F 0.07 tolerated(0.05) benign(0.012) TCGA-AA-A00N-01 18 2945697 2945697 A C LPIN2 Intron 0.22 TCGA-AA-A00N-01 18 30091988 30091988 A C WBP11P1 RNA 0.17 TCGA-AA-A00N-01 18 30092055 30092055 G A WBP11P1 RNA 0.31 TCGA-AA-A00N-01 18 30092692 30092692 G T WBP11P1 RNA 0.26 TCGA-AA-A00N-01 18 30672796 30672796 C A CCDC178 Nonsense_Mutation p.E773* 0.25 TCGA-AA-A00N-01 18 3071879 3071879 G A MYOM1 Missense_Mutation p.R1573W 0.08 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 18 3086121 3086121 A C MYOM1 Missense_Mutation p.I1389S 0.16 deleterious(0.01) probably_damaging(0.96) TCGA-AA-A00N-01 18 3164279 3164279 G A MYOM1 Nonsense_Mutation p.R500* 0.23 TCGA-AA-A00N-01 18 3168875 3168875 G A MYOM1 Missense_Mutation p.R427C 0.21 deleterious(0.03) probably_damaging(0.93) TCGA-AA-A00N-01 18 32431839 32431839 C T DTNA Silent p.I406I 0.21 TCGA-AA-A00N-01 18 32431844 32431844 C T DTNA Missense_Mutation p.A408V 0.14 tolerated(0.18) benign(0.411) TCGA-AA-A00N-01 18 32682069 32682069 G T MAPRE2 Nonsense_Mutation p.E186* 0.16 TCGA-AA-A00N-01 18 32886665 32886665 T C ZNF271 RNA 0.16 TCGA-AA-A00N-01 18 32917462 32917462 A G ZNF24 Missense_Mutation p.C281R 0.23 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 18 33263417 33263417 C T GALNT1 Nonsense_Mutation p.R182* 0.15 TCGA-AA-A00N-01 18 33263430 33263430 G A GALNT1 Missense_Mutation p.R186H 0.16 deleterious(0) probably_damaging(0.962) TCGA-AA-A00N-01 18 33573227 33573227 G A RPRD1A Missense_Mutation p.R276C 0.16 deleterious(0.04) benign(0.317) TCGA-AA-A00N-01 18 33706247 33706247 C A SLC39A6 Nonsense_Mutation p.E242* 0.20 TCGA-AA-A00N-01 18 34289258 34289258 G A FHOD3 Missense_Mutation p.E638K 0.27 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AA-A00N-01 18 34320755 34320755 G A FHOD3 Missense_Mutation p.R1063Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 18 34833780 34833780 C T CELF4 Silent p.P485P 0.15 TCGA-AA-A00N-01 18 3880087 3880087 G A DLGAP1 5'UTR 0.12 TCGA-AA-A00N-01 18 40850611 40850611 G A SYT4 Missense_Mutation p.P325S 0.13 deleterious(0) probably_damaging(0.928) TCGA-AA-A00N-01 18 42281610 42281610 A G SETBP1 Missense_Mutation p.E100G 0.07 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 18 42281665 42281665 G T SETBP1 Missense_Mutation p.K118N 0.17 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 18 42532121 42532121 A T SETBP1 Missense_Mutation p.K939M 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 18 42532744 42532744 C T SETBP1 Missense_Mutation p.L1147F 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 18 43212387 43212387 G A SLC14A2 Silent p.E198E 0.18 TCGA-AA-A00N-01 18 43219768 43219768 A G SLC14A2 Missense_Mutation p.T301A 0.23 deleterious(0.03) benign(0.008) TCGA-AA-A00N-01 18 43253660 43253660 C T SLC14A2 Missense_Mutation p.A797V 0.16 deleterious(0.01) benign(0.063) TCGA-AA-A00N-01 18 43438734 43438734 C A EPG5 Missense_Mutation p.Q2341H 0.25 deleterious(0.02) probably_damaging(0.932) TCGA-AA-A00N-01 18 43532514 43532514 G A EPG5 Silent p.F368F 0.17 TCGA-AA-A00N-01 18 43675041 43675041 A C ATP5A1 Silent p.S39S 0.19 TCGA-AA-A00N-01 18 44030270 44030270 A C RNF165 Missense_Mutation p.E209D 0.26 tolerated(0.38) probably_damaging(0.99) TCGA-AA-A00N-01 18 44085908 44085908 G A LOXHD1 Missense_Mutation p.S813L 0.25 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 18 44104731 44104731 G A LOXHD1 Silent p.C449C 0.15 TCGA-AA-A00N-01 18 44171964 44171964 T C LOXHD1 Missense_Mutation p.N529S 0.26 tolerated(0.19) possibly_damaging(0.801) TCGA-AA-A00N-01 18 44172510 44172510 C T LOXHD1 Missense_Mutation p.R490Q 0.20 deleterious(0.01) possibly_damaging(0.776) TCGA-AA-A00N-01 18 44229144 44229144 G T LOXHD1 Silent p.L73L 0.21 TCGA-AA-A00N-01 18 45374924 45374924 T G SMAD2 Missense_Mutation p.N307H 0.18 deleterious(0) probably_damaging(0.965) TCGA-AA-A00N-01 18 45395775 45395775 C T SMAD2 Missense_Mutation p.R120Q 0.20 deleterious(0.04) benign(0.248) TCGA-AA-A00N-01 18 46238062 46238062 C T CTIF Nonsense_Mutation p.R194* 0.20 TCGA-AA-A00N-01 18 46645263 46645263 G A DYM Nonsense_Mutation p.R533* 0.22 TCGA-AA-A00N-01 18 47777955 47777955 C A CCDC11 Nonsense_Mutation p.E225* 0.25 TCGA-AA-A00N-01 18 48252489 48252489 C A MAPK4 Silent p.I337I 0.23 TCGA-AA-A00N-01 18 49866982 49866982 G A DCC 5'UTR 0.22 TCGA-AA-A00N-01 18 51820119 51820119 C T POLI Missense_Mutation p.S502F 0.09 tolerated(0.21) possibly_damaging(0.482) TCGA-AA-A00N-01 18 54281805 54281805 T G TXNL1 Missense_Mutation p.K195N 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 18 5434098 5434098 G A EPB41L3 Nonsense_Mutation p.R210* 0.22 TCGA-AA-A00N-01 18 55222145 55222145 C T FECH Missense_Mutation p.A288T 0.21 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A00N-01 18 56033294 56033294 C T NEDD4L Missense_Mutation p.R633W 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 18 56202382 56202382 G T ALPK2 Silent p.G1679G 0.15 TCGA-AA-A00N-01 18 56204906 56204906 A G ALPK2 Missense_Mutation p.V838A 0.30 tolerated(0.06) benign(0.021) TCGA-AA-A00N-01 18 56278975 56278975 G T ALPK2 Missense_Mutation p.L19I 0.26 deleterious(0.03) possibly_damaging(0.85) TCGA-AA-A00N-01 18 56651291 56651291 A G ZNF532 Missense_Mutation p.K1167E 0.30 deleterious(0.02) benign(0.049) TCGA-AA-A00N-01 18 56985656 56985656 T C CPLX4 Silent p.V13V 0.15 TCGA-AA-A00N-01 18 57134060 57134060 C T CCBE1 Missense_Mutation p.G155D 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 18 5891952 5891952 G A TMEM200C Silent p.N37N 0.21 TCGA-AA-A00N-01 18 59166573 59166573 C T CDH20 Missense_Mutation p.A134V 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 18 60027215 60027215 A G TNFRSF11A Silent p.E183E 0.22 TCGA-AA-A00N-01 18 60630690 60630690 C T PHLPP1 Missense_Mutation p.S1182L 0.14 deleterious(0.03) possibly_damaging(0.901) TCGA-AA-A00N-01 18 61223421 61223421 A C SERPINB12 Missense_Mutation p.K10T 0.26 deleterious(0.01) benign(0.091) TCGA-AA-A00N-01 18 61306434 61306434 G A SERPINB4 Silent p.I251I 0.29 TCGA-AA-A00N-01 18 61324080 61324080 G A SERPINB3 Silent p.I251I 0.22 TCGA-AA-A00N-01 18 61328418 61328418 G T SERPINB3 Missense_Mutation p.F11L 0.27 tolerated(0.09) possibly_damaging(0.547) TCGA-AA-A00N-01 18 61602183 61602183 G T SERPINB10 Missense_Mutation p.D301Y 0.28 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 18 61602399 61602399 A C SERPINB10 Missense_Mutation p.N373H 0.13 deleterious(0) possibly_damaging(0.827) TCGA-AA-A00N-01 18 64212020 64212020 T C CDH19 Missense_Mutation p.D299G 0.22 tolerated(0.81) benign(0.015) TCGA-AA-A00N-01 18 65181789 65181789 G T DSEL Missense_Mutation p.F29L 0.20 tolerated_low_confidence(0.74) benign(0) TCGA-AA-A00N-01 18 65182046 65182046 C A DSEL 5'UTR 0.28 TCGA-AA-A00N-01 18 67563226 67563226 C A CD226 Missense_Mutation p.K146N 0.26 tolerated(0.16) benign(0.245) TCGA-AA-A00N-01 18 6898506 6898506 C T ARHGAP28 Intron 0.05 TCGA-AA-A00N-01 18 70451031 70451031 G T NETO1 Missense_Mutation p.F250L 0.18 deleterious(0.04) benign(0.101) TCGA-AA-A00N-01 18 72109206 72109206 C T FAM69C Missense_Mutation p.R341H 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 18 72178078 72178078 G A CNDP2 Missense_Mutation p.E163K 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 18 7231884 7231884 G A LRRC30 Missense_Mutation p.E250K 0.22 deleterious(0.01) possibly_damaging(0.864) TCGA-AA-A00N-01 18 7232012 7232012 C T LRRC30 Silent p.F292F 0.25 TCGA-AA-A00N-01 18 72515983 72515983 G A ZNF407 Intron 0.15 TCGA-AA-A00N-01 18 73000406 73000406 C T TSHZ1 Missense_Mutation p.S970L 0.15 deleterious(0) benign(0.06) TCGA-AA-A00N-01 18 73000639 73000639 C T TSHZ1 3'UTR 0.08 TCGA-AA-A00N-01 18 74563738 74563738 G A ZNF236 Missense_Mutation p.R67Q 0.16 deleterious(0.03) probably_damaging(1) TCGA-AA-A00N-01 18 74637427 74637427 A G ZNF236 Missense_Mutation p.N1313S 0.23 tolerated(0.23) benign(0.009) TCGA-AA-A00N-01 18 74639913 74639913 C T ZNF236 Missense_Mutation p.S1480L 0.27 deleterious(0) benign(0.386) TCGA-AA-A00N-01 18 74980670 74980670 G A GALR1 Missense_Mutation p.A288T 0.13 deleterious(0) probably_damaging(0.97) TCGA-AA-A00N-01 18 77107889 77107889 C T ATP9B Silent p.F934F 0.21 TCGA-AA-A00N-01 18 77474829 77474829 G A CTDP1 Missense_Mutation p.D457N 0.28 deleterious(0.04) probably_damaging(1) TCGA-AA-A00N-01 18 77906014 77906014 G A AC139100.2 5'UTR 0.28 TCGA-AA-A00N-01 18 8247878 8247878 A C PTPRM Missense_Mutation p.N830H 0.24 tolerated(0.26) probably_damaging(0.937) TCGA-AA-A00N-01 18 8314784 8314784 C A PTPRM Missense_Mutation p.H950N 0.20 deleterious(0) possibly_damaging(0.8) TCGA-AA-A00N-01 18 8387235 8387235 T C PTPRM Splice_Site p.X1403_splice 0.10 TCGA-AA-A00N-01 18 8831869 8831869 A C SOGA2 3'UTR 0.18 TCGA-AA-A00N-01 18 9195555 9195555 G T ANKRD12 Missense_Mutation p.D32Y 0.20 deleterious(0) probably_damaging(0.926) TCGA-AA-A00N-01 18 9557367 9557367 C T PPP4R1 Missense_Mutation p.R681Q 0.25 deleterious(0.03) probably_damaging(0.956) TCGA-AA-A00N-01 19 10267124 10267124 C T DNMT1 Missense_Mutation p.E448K 0.19 tolerated(0.18) benign(0.031) TCGA-AA-A00N-01 19 10403702 10403702 C T ICAM5 Silent p.C415C 0.14 TCGA-AA-A00N-01 19 10599902 10599902 C T KEAP1 Silent p.G558G 0.27 TCGA-AA-A00N-01 19 10624943 10624943 A G S1PR5 Silent p.L249L 0.25 TCGA-AA-A00N-01 19 10668734 10668734 C T KRI1 Missense_Mutation p.D431N 0.25 tolerated(0.2) possibly_damaging(0.631) TCGA-AA-A00N-01 19 10742729 10742729 C A SLC44A2 Silent p.V240V 0.16 TCGA-AA-A00N-01 19 11170723 11170723 C T SMARCA4 Missense_Mutation p.R1591W 0.21 probably_damaging(0.952) TCGA-AA-A00N-01 19 11226825 11226825 A G LDLR Missense_Mutation p.N548D 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 19 11332873 11332873 C T DOCK6 Missense_Mutation p.E1098K 0.27 deleterious(0) possibly_damaging(0.852) TCGA-AA-A00N-01 19 11598418 11598418 G A ZNF653 Missense_Mutation p.A287V 0.24 deleterious(0.05) benign(0.026) TCGA-AA-A00N-01 19 11727838 11727838 G T ZNF627 Nonsense_Mutation p.E174* 0.17 TCGA-AA-A00N-01 19 11728622 11728622 G A ZNF627 Missense_Mutation p.R435Q 0.30 tolerated(0.72) benign(0.011) TCGA-AA-A00N-01 19 11796750 11796750 A C ZNF833P RNA 0.26 TCGA-AA-A00N-01 19 11891955 11891955 G T ZNF441 Missense_Mutation p.R439I 0.19 deleterious(0.01) benign(0.055) TCGA-AA-A00N-01 19 11892194 11892194 C T ZNF441 Nonsense_Mutation p.R519* 0.24 TCGA-AA-A00N-01 19 11917796 11917796 G A ZNF491 Missense_Mutation p.R343Q 0.16 tolerated(0.84) benign(0.165) TCGA-AA-A00N-01 19 11918047 11918047 C T ZNF491 Nonsense_Mutation p.R427* 0.22 TCGA-AA-A00N-01 19 11942553 11942553 C T ZNF440 Nonsense_Mutation p.R188* 0.31 TCGA-AA-A00N-01 19 11943057 11943057 C T ZNF440 Nonsense_Mutation p.Q356* 0.31 TCGA-AA-A00N-01 19 11944232 11944232 G T ZNF440 3'UTR 0.17 TCGA-AA-A00N-01 19 12059564 12059564 G T ZNF700 Missense_Mutation p.R242I 0.22 tolerated(0.1) benign(0.428) TCGA-AA-A00N-01 19 12090573 12090573 G A ZNF763 3'UTR 0.10 TCGA-AA-A00N-01 19 12090656 12090656 C T ZNF763 3'UTR 0.23 TCGA-AA-A00N-01 19 12090770 12090770 A C ZNF763 3'UTR 0.30 TCGA-AA-A00N-01 19 12126117 12126117 C T ZNF433 Missense_Mutation p.R522Q 0.24 tolerated(0.86) benign(0.053) TCGA-AA-A00N-01 19 12154704 12154704 C A ZNF878 Missense_Mutation p.E504D 0.24 tolerated(0.07) benign(0.021) TCGA-AA-A00N-01 19 12358815 12358815 G A ZNF44 Silent p.F300F 0.43 TCGA-AA-A00N-01 19 12384807 12384807 C T ZNF44 Missense_Mutation p.R136Q 0.24 tolerated(0.14) benign(0.002) TCGA-AA-A00N-01 19 12429529 12429529 C T ZNF563 Missense_Mutation p.R437Q 0.24 tolerated(0.48) benign(0.034) TCGA-AA-A00N-01 19 12460717 12460717 C T ZNF442 Missense_Mutation p.R561Q 0.22 tolerated(0.65) benign(0.041) TCGA-AA-A00N-01 19 12542084 12542084 C A ZNF443 Missense_Mutation p.R301I 0.32 deleterious(0.01) probably_damaging(0.959) TCGA-AA-A00N-01 19 12574841 12574841 C T ZNF709 Missense_Mutation p.R632Q 0.18 tolerated(1) benign(0.015) TCGA-AA-A00N-01 19 12575430 12575430 G A ZNF709 Nonsense_Mutation p.R436* 0.27 TCGA-AA-A00N-01 19 12576293 12576293 C A ZNF709 Missense_Mutation p.R148I 0.24 deleterious(0.02) benign(0.003) TCGA-AA-A00N-01 19 12576399 12576399 A G ZNF709 Missense_Mutation p.C113R 0.06 tolerated(0.36) benign(0.002) TCGA-AA-A00N-01 19 12637295 12637295 T C ZNF564 Missense_Mutation p.I543V 0.25 tolerated(0.14) benign(0.005) TCGA-AA-A00N-01 19 12865712 12865712 G A BEST2 Missense_Mutation p.R168H 0.17 tolerated(0.25) benign(0.155) TCGA-AA-A00N-01 19 12969202 12969202 G A MAST1 Silent p.P368P 0.23 TCGA-AA-A00N-01 19 13029083 13029083 C T SYCE2 Silent p.P28P 0.14 TCGA-AA-A00N-01 19 13050356 13050356 T C CALR Missense_Mutation p.I103T 0.18 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 19 13054786 13054786 C T CALR 3'UTR 0.27 TCGA-AA-A00N-01 19 13210036 13210036 C T LYL1 3'UTR 0.25 TCGA-AA-A00N-01 19 13226990 13226990 T G TRMT1 Missense_Mutation p.N75T 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 19 13325387 13325387 G A CACNA1A Missense_Mutation p.R1923W 0.05 possibly_damaging(0.835) TCGA-AA-A00N-01 19 13365981 13365981 G A CACNA1A Silent p.F1561F 0.30 TCGA-AA-A00N-01 19 13368281 13368281 G A CACNA1A Silent p.V1491V 0.06 TCGA-AA-A00N-01 19 13563744 13563744 C T CACNA1A Missense_Mutation p.G162D 0.30 probably_damaging(0.969) TCGA-AA-A00N-01 19 14044805 14044805 T C PODNL1 Missense_Mutation p.N225S 0.15 tolerated(0.11) probably_damaging(0.932) TCGA-AA-A00N-01 19 14064065 14064065 C A DCAF15 Intron 0.12 TCGA-AA-A00N-01 19 14508749 14508749 T C CD97 Splice_Site p.X273_splice 0.09 TCGA-AA-A00N-01 19 1457127 1457127 G A APC2 Silent p.A364A 0.28 TCGA-AA-A00N-01 19 1465314 1465314 C T APC2 Silent p.L672L 0.38 TCGA-AA-A00N-01 19 14772866 14772866 G A EMR3 Silent p.V88V 0.20 TCGA-AA-A00N-01 19 14887708 14887708 G A EMR2 5'UTR 0.40 TCGA-AA-A00N-01 19 14991525 14991525 G T OR7A17 Missense_Mutation p.L215I 0.23 tolerated_low_confidence(0.11) benign(0.181) TCGA-AA-A00N-01 19 15124536 15124536 G A CCDC105 Missense_Mutation p.S208N 0.15 tolerated(0.39) benign(0.017) TCGA-AA-A00N-01 19 15285186 15285186 C T NOTCH3 Missense_Mutation p.D1477N 0.27 deleterious(0.04) probably_damaging(0.969) TCGA-AA-A00N-01 19 15291793 15291793 G A NOTCH3 Silent p.S991S 0.39 TCGA-AA-A00N-01 19 15367976 15367976 G A BRD4 Silent p.F450F 0.17 TCGA-AA-A00N-01 19 15533980 15533980 C T WIZ Silent p.R764R 0.26 TCGA-AA-A00N-01 19 15590236 15590236 C T PGLYRP2 5'UTR 0.21 TCGA-AA-A00N-01 19 15733149 15733149 G A CYP4F8 Intron 0.23 TCGA-AA-A00N-01 19 15990700 15990700 G T CYP4F2 Missense_Mutation p.L375M 0.21 deleterious(0) probably_damaging(0.955) TCGA-AA-A00N-01 19 16032917 16032917 C T CYP4F11 Missense_Mutation p.E349K 0.11 deleterious(0.01) benign(0.35) TCGA-AA-A00N-01 19 16278956 16278956 T C CIB3 Missense_Mutation p.K113R 0.26 tolerated(0.95) benign(0.009) TCGA-AA-A00N-01 19 16296291 16296291 A C FAM32A Missense_Mutation p.K13T 0.22 deleterious(0) possibly_damaging(0.875) TCGA-AA-A00N-01 19 16317176 16317176 C T AP1M1 Missense_Mutation p.A75V 0.16 tolerated(0.17) benign(0.072) TCGA-AA-A00N-01 19 16860349 16860349 G A NWD1 Missense_Mutation p.R299H 0.20 tolerated(0.28) benign(0.008) TCGA-AA-A00N-01 19 16883957 16883957 G T NWD1 Nonsense_Mutation p.E811* 0.22 TCGA-AA-A00N-01 19 17013563 17013563 G A CPAMD8 Silent p.S1574S 0.26 TCGA-AA-A00N-01 19 17015101 17015101 C T CPAMD8 Missense_Mutation p.A1443T 0.24 deleterious(0) possibly_damaging(0.899) TCGA-AA-A00N-01 19 17062821 17062821 C A CPAMD8 Missense_Mutation p.K869N 0.20 deleterious(0.01) possibly_damaging(0.804) TCGA-AA-A00N-01 19 17122541 17122541 C T CPAMD8 Silent p.A145A 0.25 TCGA-AA-A00N-01 19 17389755 17389755 G A BABAM1 Silent p.A296A 0.35 TCGA-AA-A00N-01 19 17476311 17476311 C T PLVAP Silent p.A321A 0.20 TCGA-AA-A00N-01 19 17662680 17662680 G A FAM129C Intron 0.19 TCGA-AA-A00N-01 19 17758255 17758255 C A UNC13A Missense_Mutation p.Q621H 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A00N-01 19 1805409 1805409 C A ATP8B3 Nonsense_Mutation p.E290* 0.21 TCGA-AA-A00N-01 19 18266600 18266600 C T PIK3R2 5'UTR 0.23 TCGA-AA-A00N-01 19 18956902 18956902 G A UPF1 Silent p.T115T 0.17 TCGA-AA-A00N-01 19 19033553 19033553 A C DDX49 Missense_Mutation p.K259T 0.21 deleterious(0) probably_damaging(0.98) TCGA-AA-A00N-01 19 19105843 19105843 A C SUGP2 Intron 0.22 TCGA-AA-A00N-01 19 19261521 19261521 G T MEF2B Silent p.I8I 0.05 TCGA-AA-A00N-01 19 19267874 19267874 C A MEF2B Intron 0.15 TCGA-AA-A00N-01 19 19446546 19446546 T C MAU2 Splice_Site p.X98_splice 0.26 TCGA-AA-A00N-01 19 19625544 19625544 G A TSSK6 Silent p.P231P 0.32 TCGA-AA-A00N-01 19 19651071 19651071 C T CILP2 Silent p.F74F 0.15 TCGA-AA-A00N-01 19 19744687 19744687 G A GMIP Silent p.V799V 0.25 TCGA-AA-A00N-01 19 19822367 19822367 G A ZNF14 Nonsense_Mutation p.R575* 0.26 TCGA-AA-A00N-01 19 19822451 19822451 G A ZNF14 Nonsense_Mutation p.R547* 0.18 TCGA-AA-A00N-01 19 19824904 19824904 G A ZNF14 Nonsense_Mutation p.R63* 0.14 TCGA-AA-A00N-01 19 20002715 20002715 G T ZNF253 Missense_Mutation p.R220I 0.15 tolerated(0.43) benign(0.045) TCGA-AA-A00N-01 19 20003002 20003002 G T ZNF253 Nonsense_Mutation p.E316* 0.16 TCGA-AA-A00N-01 19 20044140 20044140 C T ZNF93 Missense_Mutation p.H126Y 0.21 tolerated(0.17) benign(0.013) TCGA-AA-A00N-01 19 20229257 20229257 G A ZNF90 Silent p.S298S 0.17 TCGA-AA-A00N-01 19 21132830 21132830 C A ZNF85 Missense_Mutation p.H504N 0.14 deleterious(0) probably_damaging(0.917) TCGA-AA-A00N-01 19 21300716 21300716 A C ZNF714 Missense_Mutation p.I416L 0.39 tolerated(0.26) benign(0.009) TCGA-AA-A00N-01 19 21366169 21366169 C T ZNF431 Nonsense_Mutation p.R355* 0.14 TCGA-AA-A00N-01 19 21477032 21477032 G T ZNF708 Missense_Mutation p.H246N 0.53 deleterious(0.01) probably_damaging(0.974) TCGA-AA-A00N-01 19 21609662 21609662 A G ZNF493 3'UTR 0.24 TCGA-AA-A00N-01 19 21990937 21990937 G A ZNF43 Silent p.F634F 0.22 TCGA-AA-A00N-01 19 21991751 21991751 A G ZNF43 Missense_Mutation p.I363T 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-AA-A00N-01 19 22155609 22155609 G T ZNF208 Missense_Mutation p.H743N 0.30 deleterious(0.01) possibly_damaging(0.825) TCGA-AA-A00N-01 19 22157583 22157583 G T ZNF208 Missense_Mutation p.L85I 0.19 tolerated(0.21) possibly_damaging(0.722) TCGA-AA-A00N-01 19 22271202 22271202 C A ZNF257 Missense_Mutation p.T217N 0.24 tolerated(0.16) benign(0.078) TCGA-AA-A00N-01 19 22271727 22271727 G A ZNF257 Missense_Mutation p.R392K 0.14 tolerated(0.43) benign(0.003) TCGA-AA-A00N-01 19 2255274 2255274 C T JSRP1 Missense_Mutation p.G14S 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A00N-01 19 22939845 22939845 G A ZNF99 3'Flank 0.18 TCGA-AA-A00N-01 19 23159561 23159561 C A ZNF728 Missense_Mutation p.R193I 0.31 tolerated(0.2) benign(0.046) TCGA-AA-A00N-01 19 23837076 23837076 C A ZNF675 Missense_Mutation p.R220I 0.14 tolerated(0.39) benign(0.001) TCGA-AA-A00N-01 19 23837454 23837454 G T ZNF675 Missense_Mutation p.S94Y 0.13 deleterious(0.05) possibly_damaging(0.831) TCGA-AA-A00N-01 19 23926803 23926803 G A ZNF681 Nonsense_Mutation p.R517* 0.21 TCGA-AA-A00N-01 19 24102235 24102235 G A ZNF726 Missense_Mutation p.D22N 0.30 tolerated(0.07) probably_damaging(0.993) TCGA-AA-A00N-01 19 24102890 24102890 T C ZNF726 Intron 0.16 TCGA-AA-A00N-01 19 24309339 24309339 G T ZNF254 Missense_Mutation p.K179N 0.15 tolerated(0.18) benign(0.011) TCGA-AA-A00N-01 19 2717493 2717493 G A DIRAS1 Silent p.I104I 0.28 TCGA-AA-A00N-01 19 2877779 2877779 C T ZNF556 Nonsense_Mutation p.R275* 0.24 TCGA-AA-A00N-01 19 30477325 30477325 G A URI1 Splice_Site p.X123_splice 0.16 TCGA-AA-A00N-01 19 31039277 31039277 C A ZNF536 Silent p.S917S 0.17 TCGA-AA-A00N-01 19 31770648 31770648 G A TSHZ3 Silent p.S17S 0.16 TCGA-AA-A00N-01 19 325648 325648 C T MIER2 Silent p.R214R 0.25 TCGA-AA-A00N-01 19 32927379 32927379 A C DPY19L3 Missense_Mutation p.K119T 0.23 tolerated(0.16) benign(0.021) TCGA-AA-A00N-01 19 33096837 33096837 C T ANKRD27 Silent p.S799S 0.06 TCGA-AA-A00N-01 19 33134054 33134054 C A ANKRD27 Missense_Mutation p.D253Y 0.25 deleterious(0) possibly_damaging(0.861) TCGA-AA-A00N-01 19 33202775 33202775 G A NUDT19 Missense_Mutation p.R347H 0.20 tolerated(0.45) benign(0.014) TCGA-AA-A00N-01 19 33239418 33239418 C T TDRD12 Silent p.Y159Y 0.21 TCGA-AA-A00N-01 19 33247946 33247946 T C TDRD12 Missense_Mutation p.S259P 0.27 tolerated(0.11) possibly_damaging(0.559) TCGA-AA-A00N-01 19 33464400 33464400 C A C19orf40 Missense_Mutation p.L59I 0.19 tolerated(0.1) probably_damaging(0.991) TCGA-AA-A00N-01 19 33878296 33878296 A G PEPD Missense_Mutation p.M479T 0.14 deleterious(0) probably_damaging(0.984) TCGA-AA-A00N-01 19 34960146 34960146 G A UBA2 3'UTR 0.18 TCGA-AA-A00N-01 19 35085231 35085231 G A SCGB2B2 Missense_Mutation p.A32V 0.19 tolerated_low_confidence(0.07) benign(0.004) TCGA-AA-A00N-01 19 35175636 35175636 C T ZNF302 Missense_Mutation p.R232C 0.24 tolerated(0.06) possibly_damaging(0.764) TCGA-AA-A00N-01 19 35633341 35633341 T C FXYD1 Intron 0.22 TCGA-AA-A00N-01 19 35940829 35940829 G A FFAR2 Silent p.S71S 0.24 TCGA-AA-A00N-01 19 36257761 36257761 T C C19orf55 Missense_Mutation p.Y288H 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 19 36333318 36333318 C T NPHS1 Silent p.A823A 0.23 TCGA-AA-A00N-01 19 36582335 36582335 C T WDR62 Silent p.D726D 0.16 TCGA-AA-A00N-01 19 36727459 36727459 G A ZNF146 Silent p.T39T 0.07 TCGA-AA-A00N-01 19 36831575 36831575 G A ZFP14 Missense_Mutation p.R385C 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A00N-01 19 36831765 36831765 G A ZFP14 Silent p.F321F 0.26 TCGA-AA-A00N-01 19 36884243 36884244 - GTATGAAGT ZFP82 In_Frame_Ins p.L331_T333dup 0.13 TCGA-AA-A00N-01 19 36884392 36884392 A C ZFP82 Missense_Mutation p.C284G 0.15 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 19 37037801 37037801 C T ZNF529 Silent p.P553P 0.19 TCGA-AA-A00N-01 19 37117468 37117468 G A ZNF382 Missense_Mutation p.M223I 0.07 tolerated(0.1) benign(0.001) TCGA-AA-A00N-01 19 37118082 37118082 G T ZNF382 Missense_Mutation p.R428I 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 19 37130117 37130117 C A ZNF461 Missense_Mutation p.R377I 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A00N-01 19 37211536 37211536 G T ZNF567 Missense_Mutation p.R606I 0.31 deleterious(0.01) benign(0.002) TCGA-AA-A00N-01 19 37310148 37310148 A G ZNF790 Silent p.H366H 0.26 TCGA-AA-A00N-01 19 37316585 37316585 G A ZNF790 5'UTR 0.12 TCGA-AA-A00N-01 19 37367977 37367977 G A ZNF345 Missense_Mutation p.R82Q 0.10 deleterious(0.04) benign(0.055) TCGA-AA-A00N-01 19 37368393 37368393 C T ZNF345 Missense_Mutation p.R221W 0.27 deleterious(0.01) possibly_damaging(0.821) TCGA-AA-A00N-01 19 37369179 37369179 G A ZNF345 Missense_Mutation p.E483K 0.23 tolerated_low_confidence(0.14) benign(0.004) TCGA-AA-A00N-01 19 37370057 37370057 T G ZNF345 3'UTR 0.32 TCGA-AA-A00N-01 19 37382494 37382494 C A ZNF829 Missense_Mutation p.R481I 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-AA-A00N-01 19 37441367 37441367 C T ZNF568 Nonsense_Mutation p.R438* 0.29 TCGA-AA-A00N-01 19 37643328 37643328 C A ZNF585A Missense_Mutation p.E436D 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A00N-01 19 37643397 37643397 G A ZNF585A Silent p.C413C 0.23 TCGA-AA-A00N-01 19 37643975 37643975 C T ZNF585A Missense_Mutation p.G221R 0.26 deleterious(0.04) probably_damaging(1) TCGA-AA-A00N-01 19 37879916 37879916 G T ZNF527 Missense_Mutation p.R322I 0.24 deleterious(0) probably_damaging(0.952) TCGA-AA-A00N-01 19 37903595 37903595 T G ZNF569 Missense_Mutation p.K655N 0.27 tolerated(0.15) probably_damaging(0.998) TCGA-AA-A00N-01 19 38102601 38102601 T C ZNF540 Silent p.S140S 0.16 TCGA-AA-A00N-01 19 3810816 3810816 C T ZFR2 Missense_Mutation p.V789M 0.30 deleterious(0) probably_damaging(0.931) TCGA-AA-A00N-01 19 38125901 38125901 C T ZFP30 Missense_Mutation p.R514Q 0.09 deleterious(0.03) probably_damaging(0.964) TCGA-AA-A00N-01 19 3813849 3813849 A C ZFR2 Silent p.P737P 0.16 TCGA-AA-A00N-01 19 38160557 38160557 C A ZNF781 Nonsense_Mutation p.E165* 0.20 TCGA-AA-A00N-01 19 38160733 38160733 C T ZNF781 Missense_Mutation p.R106Q 0.28 tolerated(0.53) benign(0.083) TCGA-AA-A00N-01 19 38167266 38167266 C A ZNF781 Intron 0.16 TCGA-AA-A00N-01 19 38230342 38230342 C A ZNF573 Missense_Mutation p.R350I 0.18 deleterious(0.02) possibly_damaging(0.507) TCGA-AA-A00N-01 19 38378155 38378155 C A WDR87 Missense_Mutation p.E2013D 0.24 possibly_damaging(0.607) TCGA-AA-A00N-01 19 38378721 38378721 C A WDR87 Nonsense_Mutation p.E1825* 0.05 TCGA-AA-A00N-01 19 38382336 38382336 C A WDR87 Nonsense_Mutation p.E1045* 0.07 TCGA-AA-A00N-01 19 38383674 38383674 C T WDR87 Missense_Mutation p.R851K 0.23 probably_damaging(0.994) TCGA-AA-A00N-01 19 38386856 38386856 C T WDR87 Intron 0.25 TCGA-AA-A00N-01 19 38388908 38388908 G T WDR87 5'UTR 0.27 TCGA-AA-A00N-01 19 38983187 38983187 G A RYR1 Missense_Mutation p.R2062H 0.27 possibly_damaging(0.457) TCGA-AA-A00N-01 19 39103297 39103297 C T MAP4K1 Missense_Mutation p.E207K 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 19 39233699 39233699 C T CAPN12 Missense_Mutation p.R94H 0.25 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 19 39336683 39336683 T C HNRNPL Missense_Mutation p.E145G 0.15 deleterious(0) possibly_damaging(0.715) TCGA-AA-A00N-01 19 39390281 39390281 G T SIRT2 5'UTR 0.14 TCGA-AA-A00N-01 19 3942082 3942082 C A NMRK2 Silent p.V168V 0.29 TCGA-AA-A00N-01 19 39879412 39879412 C T PAF1 Missense_Mutation p.A244T 0.29 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 19 39908686 39908686 C T PLEKHG2 Missense_Mutation p.R342W 0.29 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AA-A00N-01 19 40005855 40005855 G T SELV Translation_Start_Site p.M1? 0.20 deleterious(0) unknown(0) TCGA-AA-A00N-01 19 40224969 40224969 C T CLC Missense_Mutation p.G86D 0.20 tolerated(0.06) possibly_damaging(0.864) TCGA-AA-A00N-01 19 40520895 40520895 G A ZNF546 Missense_Mutation p.R573Q 0.23 deleterious(0) benign(0) TCGA-AA-A00N-01 19 40520930 40520930 G T ZNF546 Nonsense_Mutation p.E585* 0.10 TCGA-AA-A00N-01 19 40521729 40521729 A C ZNF546 3'UTR 0.19 TCGA-AA-A00N-01 19 407871 407871 G T C2CD4C Missense_Mutation p.S164Y 0.19 deleterious(0) probably_damaging(0.961) TCGA-AA-A00N-01 19 41072159 41072159 G A SPTBN4 Missense_Mutation p.G2077D 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-AA-A00N-01 19 41073631 41073631 C T SPTBN4 Silent p.F2133F 0.25 TCGA-AA-A00N-01 19 41186950 41186950 C T NUMBL Missense_Mutation p.D138N 0.26 deleterious(0.02) benign(0.044) TCGA-AA-A00N-01 19 41381646 41381646 G A CYP2A7 Silent p.V479V 0.05 TCGA-AA-A00N-01 19 41442133 41442133 C T CYP2B7P RNA 0.14 TCGA-AA-A00N-01 19 4153717 4153717 G A CREB3L3 5'UTR 0.23 TCGA-AA-A00N-01 19 41597716 41597716 A C CYP2A13 Missense_Mutation p.E245A 0.22 tolerated(0.17) possibly_damaging(0.908) TCGA-AA-A00N-01 19 41798372 41798372 C T HNRNPUL1 Missense_Mutation p.R408C 0.08 deleterious(0) unknown(0) TCGA-AA-A00N-01 19 41888803 41888803 G A TMEM91 Missense_Mutation p.A113T 0.13 deleterious(0.03) benign(0.228) TCGA-AA-A00N-01 19 42091814 42091814 C A CEACAM21 Missense_Mutation p.D272E 0.14 deleterious(0.02) benign(0.041) TCGA-AA-A00N-01 19 42731740 42731740 C A ZNF526 3'UTR 0.10 TCGA-AA-A00N-01 19 42814422 42814422 G T PRR19 Splice_Site p.X201_splice 0.20 TCGA-AA-A00N-01 19 42862941 42862941 A C MEGF8 Silent p.R1659R 0.24 TCGA-AA-A00N-01 19 43268068 43268068 G A PSG8 Silent p.L144L 0.16 TCGA-AA-A00N-01 19 43383700 43383700 G A PSG1 Missense_Mutation p.R12C 0.22 tolerated(0.34) benign(0.009) TCGA-AA-A00N-01 19 43679376 43679376 C T PSG5 Missense_Mutation p.E319K 0.39 tolerated(0.38) benign(0.004) TCGA-AA-A00N-01 19 43772263 43772263 C T PSG9 Missense_Mutation p.E35K 0.27 deleterious(0.04) benign(0.013) TCGA-AA-A00N-01 19 44048353 44048353 C T XRCC1 Missense_Mutation p.G552E 0.21 deleterious(0) probably_damaging(0.952) TCGA-AA-A00N-01 19 44160757 44160757 C T PLAUR Missense_Mutation p.E116K 0.27 deleterious(0.01) possibly_damaging(0.885) TCGA-AA-A00N-01 19 44351928 44351928 G A ZNF283 Missense_Mutation p.R392Q 0.17 tolerated(0.65) benign(0.011) TCGA-AA-A00N-01 19 44500381 44500381 C A ZNF155 Missense_Mutation p.F135L 0.08 tolerated(0.37) benign(0.044) TCGA-AA-A00N-01 19 44515258 44515258 G A ZNF230 Missense_Mutation p.R356Q 0.06 deleterious(0.05) benign(0.15) TCGA-AA-A00N-01 19 44611152 44611152 G T ZNF224 Missense_Mutation p.R280I 0.16 deleterious(0.04) probably_damaging(1) TCGA-AA-A00N-01 19 44611178 44611178 A G ZNF224 Missense_Mutation p.K289E 0.14 deleterious(0.05) possibly_damaging(0.694) TCGA-AA-A00N-01 19 44636716 44636716 A C ZNF225 Missense_Mutation p.K650T 0.15 tolerated(0.08) benign(0.09) TCGA-AA-A00N-01 19 4475344 4475344 G A HDGFRP2 Missense_Mutation p.E49K 0.20 deleterious(0) possibly_damaging(0.502) TCGA-AA-A00N-01 19 44933249 44933249 C A ZNF229 Missense_Mutation p.E569D 0.17 deleterious(0.02) benign(0.022) TCGA-AA-A00N-01 19 44980824 44980824 C A ZNF180 Missense_Mutation p.R625I 0.20 deleterious(0) probably_damaging(0.983) TCGA-AA-A00N-01 19 45150790 45150790 C T PVR Silent p.F125F 0.20 TCGA-AA-A00N-01 19 45805709 45805709 C T MARK4 Missense_Mutation p.S667L 0.19 deleterious(0.01) benign(0.042) TCGA-AA-A00N-01 19 45974328 45974328 C T FOSB Intron 0.17 TCGA-AA-A00N-01 19 45974616 45974616 C A FOSB Intron 0.13 TCGA-AA-A00N-01 19 46124791 46124791 G A EML2 Missense_Mutation p.R517W 0.09 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 19 464151 464151 C T ODF3L2 Missense_Mutation p.R188H 0.09 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 19 46417648 46417648 C T NANOS2 Missense_Mutation p.G102R 0.21 tolerated(0.1) probably_damaging(1) TCGA-AA-A00N-01 19 46825098 46825098 G A HIF3A Missense_Mutation p.A404T 0.10 tolerated(0.19) possibly_damaging(0.877) TCGA-AA-A00N-01 19 46834519 46834519 C T HIF3A Missense_Mutation p.P607S 0.23 tolerated_low_confidence(0.28) probably_damaging(0.998) TCGA-AA-A00N-01 19 46974170 46974170 C T PNMAL1 Silent p.E41E 0.26 TCGA-AA-A00N-01 19 46997365 46997365 G A PNMAL2 Missense_Mutation p.A453V 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AA-A00N-01 19 46997633 46997633 C T PNMAL2 Missense_Mutation p.D364N 0.15 deleterious(0) possibly_damaging(0.467) TCGA-AA-A00N-01 19 47184925 47184925 T G PRKD2 Silent p.S684S 0.16 TCGA-AA-A00N-01 19 47259907 47259907 C T FKRP Silent p.G400G 0.25 TCGA-AA-A00N-01 19 47278698 47278698 T G SLC1A5 3'UTR 0.27 TCGA-AA-A00N-01 19 47422510 47422510 A C ARHGAP35 Missense_Mutation p.K193T 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 19 47978639 47978639 G A KPTN 3'UTR 0.24 TCGA-AA-A00N-01 19 48578124 48578124 G A PLA2G4C Silent p.G312G 0.23 TCGA-AA-A00N-01 19 48619177 48619177 G A LIG1 Nonsense_Mutation p.R877* 0.12 TCGA-AA-A00N-01 19 48879376 48879376 G A SYNGR4 Missense_Mutation p.R169Q 0.16 tolerated(0.23) benign(0.025) TCGA-AA-A00N-01 19 49377187 49377187 G A PPP1R15A Missense_Mutation p.E233K 0.15 tolerated(0.06) possibly_damaging(0.899) TCGA-AA-A00N-01 19 49517840 49517840 G A RUVBL2 Silent p.T367T 0.15 TCGA-AA-A00N-01 19 49934662 49934662 C T SLC17A7 Silent p.S398S 0.41 TCGA-AA-A00N-01 19 50138890 50138890 C T RRAS Silent p.P200P 0.05 TCGA-AA-A00N-01 19 50193813 50193813 A C ADM5 3'UTR 0.31 TCGA-AA-A00N-01 19 50435781 50435781 C A ATF5 Missense_Mutation p.T94N 0.25 tolerated(0.26) benign(0.01) TCGA-AA-A00N-01 19 50550206 50550206 C A ZNF473 Missense_Mutation p.H836N 0.30 deleterious(0) benign(0.214) TCGA-AA-A00N-01 19 50969512 50969512 A C MYBPC2 3'UTR 0.21 TCGA-AA-A00N-01 19 50970954 50970954 G A FAM71E1 Silent p.F208F 0.18 TCGA-AA-A00N-01 19 51129272 51129272 T G SYT3 Missense_Mutation p.E428D 0.24 tolerated(0.33) benign(0.072) TCGA-AA-A00N-01 19 51169549 51169549 C T SHANK1 Missense_Mutation p.A1890T 0.25 unknown(0) TCGA-AA-A00N-01 19 51170486 51170486 G A SHANK1 Silent p.F1577F 0.15 TCGA-AA-A00N-01 19 51217155 51217155 C T SHANK1 Missense_Mutation p.R231Q 0.24 possibly_damaging(0.833) TCGA-AA-A00N-01 19 51329967 51329967 C T KLK15 Silent p.S176S 0.23 TCGA-AA-A00N-01 19 51330299 51330299 C T KLK15 Missense_Mutation p.D106N 0.22 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 19 5144306 5144306 G T KDM4B Missense_Mutation p.K928N 0.18 possibly_damaging(0.788) TCGA-AA-A00N-01 19 51452217 51452217 G A KLK5 Missense_Mutation p.R164C 0.18 tolerated(0.21) benign(0.065) TCGA-AA-A00N-01 19 51466672 51466672 G A KLK6 Missense_Mutation p.R111C 0.18 deleterious(0) probably_damaging(0.93) TCGA-AA-A00N-01 19 51563758 51563758 C T KLK13 Silent p.G57G 0.25 TCGA-AA-A00N-01 19 51883397 51883397 C T LIM2 3'UTR 0.18 TCGA-AA-A00N-01 19 51920096 51920096 G T SIGLEC10 Missense_Mutation p.S177Y 0.22 deleterious(0.02) possibly_damaging(0.82) TCGA-AA-A00N-01 19 51955567 51955567 G T SIGLEC8 3'UTR 0.21 TCGA-AA-A00N-01 19 51957525 51957525 A G SIGLEC8 Missense_Mutation p.V398A 0.09 tolerated(0.46) benign(0.005) TCGA-AA-A00N-01 19 51983665 51983665 G A CEACAM18 Missense_Mutation p.R105Q 0.17 tolerated(0.29) benign(0.213) TCGA-AA-A00N-01 19 5208051 5208051 G A PTPRS Missense_Mutation p.T1887M 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 19 52091320 52091320 G A ZNF175 Missense_Mutation p.R579Q 0.30 tolerated(0.07) probably_damaging(0.997) TCGA-AA-A00N-01 19 5212225 5212225 G A PTPRS Silent p.I1602I 0.21 TCGA-AA-A00N-01 19 52249103 52249103 C A FPR1 3'UTR 0.16 TCGA-AA-A00N-01 19 52328067 52328067 C T FPR3 3'UTR 0.13 TCGA-AA-A00N-01 19 52328198 52328198 C A FPR3 3'UTR 0.26 TCGA-AA-A00N-01 19 52328478 52328478 G T FPR3 3'UTR 0.12 TCGA-AA-A00N-01 19 52375823 52375823 T G ZNF577 Missense_Mutation p.N474H 0.33 deleterious(0) possibly_damaging(0.888) TCGA-AA-A00N-01 19 52496314 52496314 C T ZNF615 Missense_Mutation p.R683K 0.20 tolerated(0.09) probably_damaging(0.995) TCGA-AA-A00N-01 19 52497406 52497406 C T ZNF615 Missense_Mutation p.R319Q 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-AA-A00N-01 19 52537355 52537355 C T ZNF432 Missense_Mutation p.S526N 0.25 deleterious(0.03) probably_damaging(0.993) TCGA-AA-A00N-01 19 52538174 52538174 C A ZNF432 Missense_Mutation p.R253I 0.27 deleterious(0) possibly_damaging(0.462) TCGA-AA-A00N-01 19 52538342 52538342 C A ZNF432 Missense_Mutation p.R197I 0.19 tolerated(0.08) benign(0.001) TCGA-AA-A00N-01 19 52568398 52568398 G A ZNF841 Missense_Mutation p.P913S 0.06 tolerated_low_confidence(0.12) benign(0.163) TCGA-AA-A00N-01 19 52570806 52570806 C T ZNF841 Missense_Mutation p.G110E 0.16 tolerated(0.67) benign(0.072) TCGA-AA-A00N-01 19 52618359 52618359 C A ZNF616 Missense_Mutation p.K686N 0.16 deleterious(0) benign(0.299) TCGA-AA-A00N-01 19 52618711 52618711 C T ZNF616 Missense_Mutation p.R569K 0.26 tolerated(0.21) benign(0.248) TCGA-AA-A00N-01 19 52658138 52658138 G T ZNF836 Missense_Mutation p.S933Y 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.831) TCGA-AA-A00N-01 19 52658711 52658711 C A ZNF836 Missense_Mutation p.R742I 0.21 tolerated(0.13) possibly_damaging(0.905) TCGA-AA-A00N-01 19 52660407 52660407 C T ZNF836 Missense_Mutation p.V177I 0.19 tolerated(0.34) benign(0.084) TCGA-AA-A00N-01 19 52826012 52826012 A C ZNF480 Missense_Mutation p.K503N 0.11 tolerated(0.11) possibly_damaging(0.816) TCGA-AA-A00N-01 19 52909857 52909857 G A ZNF528 Missense_Mutation p.D78N 0.25 tolerated(0.59) benign(0) TCGA-AA-A00N-01 19 52941547 52941547 C A ZNF534 Silent p.V291V 0.19 TCGA-AA-A00N-01 19 52941781 52941781 T C ZNF534 Silent p.C369C 0.21 TCGA-AA-A00N-01 19 52942120 52942120 C T ZNF534 Silent p.N482N 0.27 TCGA-AA-A00N-01 19 53058013 53058013 G T ZNF808 Missense_Mutation p.R615I 0.19 tolerated(0.08) benign(0.008) TCGA-AA-A00N-01 19 53086317 53086317 C A ZNF701 Missense_Mutation p.F401L 0.32 deleterious(0.02) probably_damaging(0.963) TCGA-AA-A00N-01 19 53117170 53117170 T G ZNF83 Missense_Mutation p.Q216H 0.27 tolerated(0.17) benign(0.004) TCGA-AA-A00N-01 19 53302082 53302082 T G ZNF28 3'UTR 0.15 TCGA-AA-A00N-01 19 53303036 53303036 C T ZNF28 Missense_Mutation p.E688K 0.33 deleterious(0.04) benign(0.14) TCGA-AA-A00N-01 19 53454447 53454447 C A ZNF816 Missense_Mutation p.R194I 0.23 tolerated(0.08) benign(0.094) TCGA-AA-A00N-01 19 53761665 53761665 T C VN1R2 Missense_Mutation p.Y13H 0.23 benign(0.035) TCGA-AA-A00N-01 19 53762403 53762403 A G VN1R2 Missense_Mutation p.K259E 0.17 tolerated(0.68) benign(0.007) TCGA-AA-A00N-01 19 53770310 53770310 A C VN1R4 Silent p.V203V 0.16 TCGA-AA-A00N-01 19 53794367 53794367 G A BIRC8 5'UTR 0.23 TCGA-AA-A00N-01 19 53794778 53794778 C T BIRC8 5'UTR 0.19 TCGA-AA-A00N-01 19 53855724 53855724 G T ZNF845 Missense_Mutation p.R599I 0.20 tolerated(0.05) probably_damaging(0.978) TCGA-AA-A00N-01 19 53856925 53856925 A C ZNF845 3'UTR 0.27 TCGA-AA-A00N-01 19 53884149 53884149 G T ZNF525 Missense_Mutation p.R106I 0.08 tolerated(0.06) possibly_damaging(0.504) TCGA-AA-A00N-01 19 53886748 53886748 T G ZNF525 3'UTR 0.26 TCGA-AA-A00N-01 19 53886762 53886762 C T ZNF525 3'UTR 0.13 TCGA-AA-A00N-01 19 53914170 53914170 A C ZNF765 3'UTR 0.31 TCGA-AA-A00N-01 19 53960378 53960378 C T ZNF761 RNA 0.16 TCGA-AA-A00N-01 19 54205991 54205991 T A MIR518B RNA 0.22 TCGA-AA-A00N-01 19 54238203 54238203 C T MIR518D RNA 0.12 TCGA-AA-A00N-01 19 54261542 54261542 C T MIR1283-2 RNA 0.31 TCGA-AA-A00N-01 19 54313884 54313884 C T NLRP12 Silent p.R343R 0.21 TCGA-AA-A00N-01 19 54318223 54318223 C T NLRP12 Silent p.P103P 0.31 TCGA-AA-A00N-01 19 54406392 54406392 G A PRKCG Silent p.E547E 0.23 TCGA-AA-A00N-01 19 54544082 54544082 C A VSTM1 3'UTR 0.28 TCGA-AA-A00N-01 19 54665981 54665981 C T TMC4 Missense_Mutation p.A521T 0.19 tolerated(0.34) benign(0.16) TCGA-AA-A00N-01 19 55084897 55084897 G A LILRA2 5'UTR 0.26 TCGA-AA-A00N-01 19 55142735 55142735 C G LILRB1 Silent p.G16G 0.27 TCGA-AA-A00N-01 19 55144609 55144609 G A LILRB1 Nonsense_Mutation p.W367* 0.27 TCGA-AA-A00N-01 19 55147699 55147699 G A AC009892.10 Intron 0.22 TCGA-AA-A00N-01 19 55445014 55445014 C A NLRP7 Missense_Mutation p.K855N 0.20 tolerated(0.16) benign(0.12) TCGA-AA-A00N-01 19 55493934 55493934 T G NLRP2 Missense_Mutation p.F290V 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 19 55653233 55653233 C A TNNT1 Missense_Mutation p.D62Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 19 55693238 55693238 G A PTPRH Missense_Mutation p.R1078W 0.17 probably_damaging(0.983) TCGA-AA-A00N-01 19 55800982 55800982 C T BRSK1 Missense_Mutation p.S151F 0.17 deleterious(0.04) possibly_damaging(0.788) TCGA-AA-A00N-01 19 55805406 55805406 G A BRSK1 Silent p.E160E 0.27 TCGA-AA-A00N-01 19 55870100 55870100 C T FAM71E2 Silent p.S712S 0.13 TCGA-AA-A00N-01 19 56113511 56113511 G A ZNF524 Silent p.S11S 0.11 TCGA-AA-A00N-01 19 56113605 56113605 A C ZNF524 Missense_Mutation p.N43H 0.20 tolerated_low_confidence(0.4) benign(0.002) TCGA-AA-A00N-01 19 56160593 56160593 G T CCDC106 Missense_Mutation p.E18D 0.07 tolerated(0.07) benign(0.004) TCGA-AA-A00N-01 19 56223239 56223239 C A NLRP9 Missense_Mutation p.A924S 0.18 tolerated(0.37) benign(0) TCGA-AA-A00N-01 19 56244335 56244335 G A NLRP9 Missense_Mutation p.R288W 0.17 deleterious(0) possibly_damaging(0.72) TCGA-AA-A00N-01 19 56321612 56321612 G A NLRP11 Missense_Mutation p.R122C 0.24 tolerated(0.1) benign(0) TCGA-AA-A00N-01 19 56388399 56388399 G T NLRP4 Missense_Mutation p.D855Y 0.31 tolerated(0.3) benign(0.082) TCGA-AA-A00N-01 19 56466234 56466234 C T NLRP8 Silent p.L270L 0.17 TCGA-AA-A00N-01 19 56895911 56895911 A C ZNF582 Missense_Mutation p.F292C 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 19 5690575 5690575 G T RPL36 Missense_Mutation p.K19N 0.05 deleterious(0.01) possibly_damaging(0.729) TCGA-AA-A00N-01 19 57035908 57035908 G A ZNF471 Missense_Mutation p.E158K 0.06 tolerated(0.87) benign(0.002) TCGA-AA-A00N-01 19 57036872 57036872 G T ZNF471 Missense_Mutation p.R479I 0.12 deleterious(0) probably_damaging(0.955) TCGA-AA-A00N-01 19 57065679 57065679 G A ZFP28 Missense_Mutation p.D509N 0.13 tolerated(0.08) benign(0.179) TCGA-AA-A00N-01 19 57065903 57065903 T C ZFP28 Silent p.H583H 0.12 TCGA-AA-A00N-01 19 57066159 57066159 G T ZFP28 Nonsense_Mutation p.G669* 0.25 TCGA-AA-A00N-01 19 57175214 57175214 G A ZNF835 Silent p.C451C 0.21 TCGA-AA-A00N-01 19 57176094 57176094 C T ZNF835 Missense_Mutation p.R158H 0.27 deleterious(0) probably_damaging(0.962) TCGA-AA-A00N-01 19 57640925 57640925 T G USP29 Missense_Mutation p.C294W 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 19 57722724 57722724 G A ZNF264 Missense_Mutation p.D87N 0.09 tolerated(0.22) benign(0.005) TCGA-AA-A00N-01 19 57742476 57742476 G T AURKC 5'UTR 0.14 TCGA-AA-A00N-01 19 57765182 57765182 G A ZNF805 Missense_Mutation p.R332Q 0.13 tolerated(0.53) possibly_damaging(0.871) TCGA-AA-A00N-01 19 57765737 57765737 G T ZNF805 Missense_Mutation p.G517V 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 19 57772741 57772741 T G CTC-444N24.8 RNA 0.06 TCGA-AA-A00N-01 19 57803135 57803135 G A ZNF460 Missense_Mutation p.R409Q 0.13 tolerated(0.33) possibly_damaging(0.784) TCGA-AA-A00N-01 19 57868684 57868684 G A ZNF304 Missense_Mutation p.A483T 0.17 tolerated(0.13) probably_damaging(0.92) TCGA-AA-A00N-01 19 57876369 57876369 G A TRAPPC2P1 Silent p.S56S 0.22 TCGA-AA-A00N-01 19 57967731 57967731 C T VN1R1 Missense_Mutation p.A42T 0.22 tolerated(0.11) benign(0.313) TCGA-AA-A00N-01 19 58005261 58005261 C T ZNF419 Nonsense_Mutation p.R447* 0.22 TCGA-AA-A00N-01 19 58101718 58101718 T C ZIK1 Missense_Mutation p.L180S 0.20 tolerated(0.24) benign(0.003) TCGA-AA-A00N-01 19 58117569 58117569 T G ZNF530 Missense_Mutation p.F226V 0.24 deleterious(0.01) benign(0.084) TCGA-AA-A00N-01 19 58132311 58132311 T G ZNF134 Missense_Mutation p.L275R 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 19 58146006 58146006 A G ZNF211 Missense_Mutation p.T47A 0.25 tolerated(0.07) benign(0.107) TCGA-AA-A00N-01 19 58213694 58213694 C T ZNF154 Missense_Mutation p.R208Q 0.17 tolerated(1) possibly_damaging(0.63) TCGA-AA-A00N-01 19 58258402 58258402 G A ZNF776 5'UTR 0.28 TCGA-AA-A00N-01 19 58291102 58291102 C T ZNF586 Missense_Mutation p.R383C 0.21 deleterious(0.01) probably_damaging(0.935) TCGA-AA-A00N-01 19 58353247 58353247 G A ZNF587B Intron 0.22 TCGA-AA-A00N-01 19 5844372 5844372 C T FUT3 Missense_Mutation p.R160H 0.20 tolerated(0.05) possibly_damaging(0.908) TCGA-AA-A00N-01 19 58477992 58477992 G A C19orf18 Missense_Mutation p.R93W 0.12 deleterious(0) benign(0.356) TCGA-AA-A00N-01 19 58578756 58578756 G A ZNF135 Missense_Mutation p.E326K 0.41 deleterious(0.05) probably_damaging(0.94) TCGA-AA-A00N-01 19 58724216 58724216 C A ZNF274 Missense_Mutation p.H556N 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A00N-01 19 58864529 58864529 G A A1BG Silent p.S35S 0.27 TCGA-AA-A00N-01 19 58928563 58928563 G A ZNF584 Silent p.P226P 0.30 TCGA-AA-A00N-01 19 58944811 58944811 C A ZNF132 Missense_Mutation p.R667I 0.08 deleterious(0.03) probably_damaging(0.976) TCGA-AA-A00N-01 19 58966543 58966543 C T ZNF324B Intron 0.15 TCGA-AA-A00N-01 19 59063754 59063754 G A CHMP2A Missense_Mutation p.R74C 0.18 deleterious(0.01) possibly_damaging(0.849) TCGA-AA-A00N-01 19 613921 613921 C T HCN2 Missense_Mutation p.S632L 0.11 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 19 6166026 6166026 C T ACSBG2 Silent p.N246N 0.28 TCGA-AA-A00N-01 19 6185582 6185582 C T ACSBG2 Silent p.I486I 0.22 TCGA-AA-A00N-01 19 629990 629990 C A POLRMT Missense_Mutation p.K124N 0.20 tolerated(0.17) benign(0.051) TCGA-AA-A00N-01 19 6309763 6309763 C T ACER1 Missense_Mutation p.A145T 0.19 tolerated(0.06) possibly_damaging(0.883) TCGA-AA-A00N-01 19 6381158 6381158 T C GTF2F1 Missense_Mutation p.E356G 0.17 tolerated(0.05) possibly_damaging(0.6) TCGA-AA-A00N-01 19 6586039 6586039 G A CD70 Missense_Mutation p.R192C 0.20 tolerated(0.17) benign(0.095) TCGA-AA-A00N-01 19 6665058 6665058 C T TNFSF14 Missense_Mutation p.S201N 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 19 6692959 6692959 C T C3 Silent p.A1122A 0.20 TCGA-AA-A00N-01 19 6697454 6697454 G T C3 Silent p.V899V 0.18 TCGA-AA-A00N-01 19 6908767 6908767 C T EMR1 Missense_Mutation p.T369I 0.18 tolerated(0.06) benign(0.175) TCGA-AA-A00N-01 19 6908776 6908776 C A EMR1 Missense_Mutation p.S372Y 0.25 deleterious(0) probably_damaging(0.971) TCGA-AA-A00N-01 19 694857 694857 G A PRSS57 Nonsense_Mutation p.R65* 0.20 TCGA-AA-A00N-01 19 726187 726187 G A PALM Missense_Mutation p.A19T 0.17 deleterious(0.03) benign(0.327) TCGA-AA-A00N-01 19 7511959 7511959 G T ARHGEF18 Nonsense_Mutation p.E360* 0.18 TCGA-AA-A00N-01 19 7805857 7805857 A G CD209 3'UTR 0.16 TCGA-AA-A00N-01 19 7913839 7913839 C T EVI5L Silent p.F120F 0.21 TCGA-AA-A00N-01 19 8138173 8138173 C A FBN3 Nonsense_Mutation p.E2571* 0.19 TCGA-AA-A00N-01 19 8188776 8188776 C T FBN3 Missense_Mutation p.E950K 0.25 tolerated(0.16) benign(0.009) TCGA-AA-A00N-01 19 8548043 8548043 A C HNRNPM Missense_Mutation p.E374D 0.17 tolerated(0.27) benign(0.023) TCGA-AA-A00N-01 19 8550961 8550961 G A HNRNPM Missense_Mutation p.R550H 0.24 tolerated(0.17) probably_damaging(0.965) TCGA-AA-A00N-01 19 8642282 8642282 G A MYO1F 5'UTR 0.23 TCGA-AA-A00N-01 19 881681 881681 C T MED16 Missense_Mutation p.R340Q 0.07 tolerated(0.71) benign(0.012) TCGA-AA-A00N-01 19 8931968 8931968 G A ZNF558 Silent p.F45F 0.07 TCGA-AA-A00N-01 19 8993521 8993521 G A MUC16 Silent p.T13856T 0.26 TCGA-AA-A00N-01 19 9000518 9000518 T C MUC16 Missense_Mutation p.N13489S 0.22 probably_damaging(0.92) TCGA-AA-A00N-01 19 9049298 9049298 G A MUC16 Missense_Mutation p.S10778L 0.19 benign(0.118) TCGA-AA-A00N-01 19 9061629 9061629 C T MUC16 Missense_Mutation p.R8606H 0.19 unknown(0) TCGA-AA-A00N-01 19 9066570 9066570 G A MUC16 Missense_Mutation p.S6959F 0.21 unknown(0) TCGA-AA-A00N-01 19 9067148 9067148 C T MUC16 Silent p.S6766S 0.20 TCGA-AA-A00N-01 19 9067385 9067385 C A MUC16 Missense_Mutation p.E6687D 0.18 unknown(0) TCGA-AA-A00N-01 19 9070618 9070618 G A MUC16 Missense_Mutation p.R5610W 0.18 unknown(0) TCGA-AA-A00N-01 19 9074162 9074162 C A MUC16 Missense_Mutation p.K4428N 0.12 unknown(0) TCGA-AA-A00N-01 19 9084542 9084542 C T MUC16 Missense_Mutation p.A2425T 0.20 unknown(0) TCGA-AA-A00N-01 19 9086115 9086115 C T MUC16 Silent p.E1900E 0.19 TCGA-AA-A00N-01 19 9090741 9090741 C A MUC16 Missense_Mutation p.K358N 0.27 unknown(0) TCGA-AA-A00N-01 19 9091043 9091043 G A MUC16 Silent p.L258L 0.07 TCGA-AA-A00N-01 19 9297115 9297115 C T OR7D2 Nonsense_Mutation p.R220* 0.23 TCGA-AA-A00N-01 19 9297955 9297955 C T OR7D2 3'UTR 0.22 TCGA-AA-A00N-01 19 9299085 9299085 A G OR7D2 3'UTR 0.31 TCGA-AA-A00N-01 19 9325202 9325203 - A OR7D4 Frame_Shift_Ins p.L104Ffs*18 0.07 TCGA-AA-A00N-01 19 9362191 9362191 C A OR7E24 Missense_Mutation p.L158I 0.06 deleterious(0.03) benign(0.172) TCGA-AA-A00N-01 19 9449947 9449947 T G ZNF559 Missense_Mutation p.L38V 0.08 deleterious(0) possibly_damaging(0.874) TCGA-AA-A00N-01 19 9580346 9580346 C A ZNF560 Missense_Mutation p.E163D 0.13 deleterious(0.02) benign(0.217) TCGA-AA-A00N-01 19 9763605 9763605 C A ZNF562 3'UTR 0.19 TCGA-AA-A00N-01 19 9801205 9801205 C T ZNF812 Missense_Mutation p.R325Q 0.29 tolerated(0.06) benign(0.088) TCGA-AA-A00N-01 1 10035759 10035759 G T NMNAT1 Missense_Mutation p.K75N 0.23 deleterious(0.04) benign(0.035) TCGA-AA-A00N-01 1 100819405 100819405 A G CDC14A Missense_Mutation p.E46G 0.16 deleterious(0) probably_damaging(0.965) TCGA-AA-A00N-01 1 101006323 101006323 A C GPR88 3'UTR 0.23 TCGA-AA-A00N-01 1 101203819 101203819 G A VCAM1 Missense_Mutation p.A734T 0.24 tolerated(0.06) probably_damaging(1) TCGA-AA-A00N-01 1 101427387 101427387 T G SLC30A7 Silent p.V282V 0.18 TCGA-AA-A00N-01 1 101705772 101705772 C T S1PR1 3'UTR 0.24 TCGA-AA-A00N-01 1 103491414 103491414 A C COL11A1 Intron 0.17 TCGA-AA-A00N-01 1 10364223 10364223 G A KIF1B Intron 0.22 TCGA-AA-A00N-01 1 104068702 104068702 C T RNPC3 Missense_Mutation p.P4S 0.22 deleterious_low_confidence(0) benign(0.003) TCGA-AA-A00N-01 1 104114169 104114169 C A AMY2B Intron 0.23 TCGA-AA-A00N-01 1 104122032 104122032 C A AMY2B Silent p.I482I 0.22 TCGA-AA-A00N-01 1 104160720 104160720 G - AMY2A Frame_Shift_Del 0.20 TCGA-AA-A00N-01 1 10423363 10423363 G A KIF1B Missense_Mutation p.E1397K 0.20 deleterious(0) possibly_damaging(0.469) TCGA-AA-A00N-01 1 104297180 104297180 A G AMY1C Missense_Mutation p.N313S 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 1 10703238 10703238 G A CASZ1 Silent p.F1333F 0.23 TCGA-AA-A00N-01 1 107601595 107601595 C A PRMT6 3'UTR 0.15 TCGA-AA-A00N-01 1 107867155 107867155 C T NTNG1 Silent p.L166L 0.16 TCGA-AA-A00N-01 1 108769328 108769328 G A NBPF4 Silent p.F616F 0.17 TCGA-AA-A00N-01 1 108771659 108771659 G A NBPF4 Nonsense_Mutation p.R515* 0.19 TCGA-AA-A00N-01 1 108918813 108918813 C T NBPF6 Intron 0.12 TCGA-AA-A00N-01 1 109191496 109191496 C A HENMT1 Nonsense_Mutation p.E292* 0.21 TCGA-AA-A00N-01 1 109529286 109529286 T G WDR47 Missense_Mutation p.K603T 0.17 tolerated(0.43) benign(0.002) TCGA-AA-A00N-01 1 109815549 109815549 A C CELSR2 Missense_Mutation p.E2746D 0.34 tolerated_low_confidence(0.34) benign(0.222) TCGA-AA-A00N-01 1 109824633 109824633 G A PSRC1 Nonsense_Mutation p.R43* 0.18 TCGA-AA-A00N-01 1 109859531 109859531 G A SORT1 Nonsense_Mutation p.R731* 0.27 TCGA-AA-A00N-01 1 110146043 110146043 T G GNAT2 Missense_Mutation p.K333T 0.24 deleterious(0.01) possibly_damaging(0.837) TCGA-AA-A00N-01 1 110155574 110155574 A C GNAT2 5'UTR 0.22 TCGA-AA-A00N-01 1 110217381 110217381 A T GSTM2 Missense_Mutation p.I194F 0.05 deleterious(0) probably_damaging(0.923) TCGA-AA-A00N-01 1 110256305 110256305 G T GSTM5 Missense_Mutation p.K94N 0.04 deleterious(0.02) benign(0.07) TCGA-AA-A00N-01 1 110656540 110656540 T C UBL4B 3'UTR 0.23 TCGA-AA-A00N-01 1 110735283 110735283 G A SLC6A17 Missense_Mutation p.G421D 0.23 tolerated(0.22) benign(0.068) TCGA-AA-A00N-01 1 110996644 110996644 G A PROK1 Missense_Mutation p.R45Q 0.29 deleterious(0.04) benign(0.072) TCGA-AA-A00N-01 1 111147188 111147188 G A KCNA2 Nonsense_Mutation p.R73* 0.15 TCGA-AA-A00N-01 1 111215722 111215722 C A KCNA3 Missense_Mutation p.K570N 0.26 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 1 111216021 111216021 T C KCNA3 Missense_Mutation p.T471A 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-AA-A00N-01 1 111216964 111216964 G A KCNA3 Silent p.F156F 0.20 TCGA-AA-A00N-01 1 11167524 11167524 G A MTOR 3'UTR 0.21 TCGA-AA-A00N-01 1 111773879 111773879 C A CHI3L2 Missense_Mutation p.L98I 0.18 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 1 111959064 111959064 C T OVGP1 Missense_Mutation p.R346Q 0.20 tolerated(0.37) benign(0.129) TCGA-AA-A00N-01 1 111969247 111969247 G A OVGP1 Silent p.L24L 0.25 TCGA-AA-A00N-01 1 111999277 111999277 C T ATP5F1 Missense_Mutation p.A138V 0.21 tolerated(0.77) benign(0.004) TCGA-AA-A00N-01 1 111999323 111999323 G A ATP5F1 Silent p.E153E 0.24 TCGA-AA-A00N-01 1 112031538 112031538 C T ADORA3 Missense_Mutation p.R189Q 0.18 deleterious_low_confidence(0.03) benign(0.011) TCGA-AA-A00N-01 1 112303789 112303789 A C DDX20 Intron 0.23 TCGA-AA-A00N-01 1 112305328 112305328 G T DDX20 Silent p.V378V 0.13 TCGA-AA-A00N-01 1 112308466 112308466 A C DDX20 Missense_Mutation p.K474Q 0.15 tolerated(0.48) benign(0.006) TCGA-AA-A00N-01 1 112998999 112998999 C T CTTNBP2NL Silent p.T295T 0.28 TCGA-AA-A00N-01 1 113084561 113084561 G T ST7L Intron 0.23 TCGA-AA-A00N-01 1 113459778 113459778 T C SLC16A1 Intron 0.19 TCGA-AA-A00N-01 1 114128120 114128120 G A MAGI3 Missense_Mutation p.R222Q 0.07 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 114165435 114165435 A C MAGI3 Missense_Mutation p.E393D 0.33 tolerated(0.14) benign(0.012) TCGA-AA-A00N-01 1 114246728 114246728 G A PHTF1 Missense_Mutation p.S622L 0.21 tolerated(0.33) benign(0.3) TCGA-AA-A00N-01 1 114255968 114255968 C T PHTF1 Missense_Mutation p.R239Q 0.04 tolerated(0.3) benign(0) TCGA-AA-A00N-01 1 114523285 114523285 T G OLFML3 Intron 0.19 TCGA-AA-A00N-01 1 114948093 114948093 C T TRIM33 Missense_Mutation p.E903K 0.08 deleterious(0.01) possibly_damaging(0.605) TCGA-AA-A00N-01 1 114964190 114964190 C T TRIM33 Silent p.T643T 0.05 TCGA-AA-A00N-01 1 115218606 115218606 C A AMPD1 Missense_Mutation p.K502N 0.17 tolerated(0.33) possibly_damaging(0.876) TCGA-AA-A00N-01 1 115223060 115223060 C T AMPD1 Missense_Mutation p.R229Q 0.07 tolerated(0.49) benign(0.001) TCGA-AA-A00N-01 1 115252246 115252246 C T NRAS Missense_Mutation p.E132K 0.18 tolerated(0.16) benign(0.31) TCGA-AA-A00N-01 1 115275304 115275304 C T CSDE1 Missense_Mutation p.R370Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 1 115403428 115403428 A C SYCP1 Missense_Mutation p.K199T 0.19 tolerated(0.06) probably_damaging(0.92) TCGA-AA-A00N-01 1 115454108 115454108 A G SYCP1 Silent p.V478V 0.19 TCGA-AA-A00N-01 1 115829289 115829289 G A NGF Missense_Mutation p.S43F 0.18 deleterious(0.04) benign(0.062) TCGA-AA-A00N-01 1 116193975 116193975 T G VANGL1 5'UTR 0.08 TCGA-AA-A00N-01 1 116383141 116383141 G A NHLH2 5'UTR 0.15 TCGA-AA-A00N-01 1 1169575 1169575 G A B3GALT6 3'UTR 0.15 TCGA-AA-A00N-01 1 11708654 11708654 C T FBXO2 3'UTR 0.21 TCGA-AA-A00N-01 1 117150767 117150767 A C IGSF3 Missense_Mutation p.F340C 0.29 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 1 117297332 117297332 T G CD2 Missense_Mutation p.S47R 0.21 tolerated(0.17) benign(0.09) TCGA-AA-A00N-01 1 117484374 117484374 G A PTGFRN Silent p.A29A 0.17 TCGA-AA-A00N-01 1 117504146 117504146 A C PTGFRN Missense_Mutation p.N499H 0.23 tolerated(0.15) benign(0.006) TCGA-AA-A00N-01 1 118167956 118167956 T C FAM46C 3'UTR 0.27 TCGA-AA-A00N-01 1 118477295 118477295 C T WDR3 Missense_Mutation p.S124F 0.35 deleterious(0) probably_damaging(0.975) TCGA-AA-A00N-01 1 118483783 118483783 C T WDR3 Missense_Mutation p.R276W 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 118598376 118598376 A C SPAG17 Missense_Mutation p.F901C 0.21 tolerated(0.17) possibly_damaging(0.632) TCGA-AA-A00N-01 1 118598450 118598450 T G SPAG17 Missense_Mutation p.K876N 0.12 deleterious(0.01) benign(0.001) TCGA-AA-A00N-01 1 118624162 118624162 C T SPAG17 Silent p.G622G 0.22 TCGA-AA-A00N-01 1 11907696 11907696 C T NPPA Missense_Mutation p.A16T 0.06 tolerated(0.41) unknown(0) TCGA-AA-A00N-01 1 11918771 11918771 C T NPPB Silent p.T40T 0.27 TCGA-AA-A00N-01 1 119927676 119927676 G T HAO2 Missense_Mutation p.K187N 0.13 tolerated(0.24) benign(0.014) TCGA-AA-A00N-01 1 119934802 119934802 C T HAO2 Nonsense_Mutation p.R281* 0.33 TCGA-AA-A00N-01 1 120512210 120512210 G A NOTCH2 Silent p.F344F 0.20 TCGA-AA-A00N-01 1 12198474 12198474 G A TNFRSF8 Silent p.E508E 0.20 TCGA-AA-A00N-01 1 12336786 12336786 G A VPS13D Silent p.P1047P 0.17 TCGA-AA-A00N-01 1 12374304 12374304 G A VPS13D Silent p.T2356T 0.19 TCGA-AA-A00N-01 1 12628223 12628223 C T DHRS3 3'UTR 0.19 TCGA-AA-A00N-01 1 1269071 1269071 A C TAS1R3 Missense_Mutation p.S596R 0.25 deleterious(0) probably_damaging(0.966) TCGA-AA-A00N-01 1 12726318 12726318 G A AADACL4 Missense_Mutation p.A266T 0.24 tolerated(0.23) possibly_damaging(0.595) TCGA-AA-A00N-01 1 12907556 12907556 G T HNRNPCL1 Missense_Mutation p.S196Y 0.24 tolerated(0.29) benign(0.003) TCGA-AA-A00N-01 1 12907715 12907715 G A HNRNPCL1 Missense_Mutation p.S143L 0.21 tolerated(0.91) benign(0.133) TCGA-AA-A00N-01 1 1354672 1354672 C A ANKRD65 Missense_Mutation p.K336N 0.24 deleterious(0.01) unknown(0) TCGA-AA-A00N-01 1 13669004 13669004 C T PRAMEF14 Silent p.R442R 0.21 TCGA-AA-A00N-01 1 13910345 13910345 C T PDPN Silent p.V15V 0.12 TCGA-AA-A00N-01 1 144868113 144868113 C T PDE4DIP Missense_Mutation p.D1776N 0.07 tolerated(0.47) benign(0.001) TCGA-AA-A00N-01 1 144882580 144882580 C T PDE4DIP Missense_Mutation p.E1147K 0.07 tolerated(0.05) benign(0.062) TCGA-AA-A00N-01 1 144915524 144915524 C T PDE4DIP Missense_Mutation p.R634Q 0.07 deleterious(0.01) possibly_damaging(0.802) TCGA-AA-A00N-01 1 144952189 144952189 G A PDE4DIP Intron 0.06 TCGA-AA-A00N-01 1 145074974 145074974 C T PDE4DIP Missense_Mutation p.R107Q 0.09 tolerated_low_confidence(0.28) benign(0.001) TCGA-AA-A00N-01 1 145282014 145282014 G T NOTCH2NL Nonsense_Mutation p.E232* 0.07 TCGA-AA-A00N-01 1 145518190 145518190 G A PEX11B Missense_Mutation p.A98T 0.19 tolerated(0.17) possibly_damaging(0.794) TCGA-AA-A00N-01 1 147091363 147091363 G A BCL9 Missense_Mutation p.E468K 0.09 deleterious(0) probably_damaging(0.955) TCGA-AA-A00N-01 1 147380308 147380308 C T GJA8 Missense_Mutation p.R76C 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 149898396 149898396 C T SF3B4 Missense_Mutation p.R193Q 0.22 deleterious(0.05) probably_damaging(0.987) TCGA-AA-A00N-01 1 149900805 149900805 G A MTMR11 3'UTR 0.25 TCGA-AA-A00N-01 1 150256221 150256221 G T C1orf51 Nonsense_Mutation p.E125* 0.22 TCGA-AA-A00N-01 1 150259295 150259295 A G C1orf51 Missense_Mutation p.T363A 0.07 tolerated_low_confidence(0.13) benign(0.009) TCGA-AA-A00N-01 1 150479571 150479571 C T TARS2 3'UTR 0.32 TCGA-AA-A00N-01 1 150672620 150672620 G A HORMAD1 Missense_Mutation p.R358W 0.29 deleterious(0.01) possibly_damaging(0.794) TCGA-AA-A00N-01 1 150722510 150722510 A G CTSS Silent p.R255R 0.25 TCGA-AA-A00N-01 1 150923181 150923181 C T SETDB1 Missense_Mutation p.R610W 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 151139648 151139648 A C SCNM1 Missense_Mutation p.N88T 0.05 tolerated(0.1) benign(0.108) TCGA-AA-A00N-01 1 151142577 151142577 G A TMOD4 Missense_Mutation p.R340C 0.05 deleterious(0) possibly_damaging(0.698) TCGA-AA-A00N-01 1 151210723 151210723 A C PIP5K1A Missense_Mutation p.D404A 0.18 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 1 151265470 151265470 C T PI4KB Missense_Mutation p.R782Q 0.13 tolerated(0.3) benign(0.248) TCGA-AA-A00N-01 1 151665461 151665461 C T SNX27 Silent p.F488F 0.27 TCGA-AA-A00N-01 1 151732590 151732590 C A MRPL9 Missense_Mutation p.R247I 0.28 deleterious(0) probably_damaging(0.954) TCGA-AA-A00N-01 1 151774948 151774948 C T LINGO4 Missense_Mutation p.G78E 0.35 tolerated(0.4) probably_damaging(0.954) TCGA-AA-A00N-01 1 151860757 151860757 A C THEM4 Missense_Mutation p.N183K 0.21 deleterious(0) probably_damaging(0.92) TCGA-AA-A00N-01 1 152057445 152057445 A C TCHHL1 Nonstop_Mutation p.*905Gext*27 0.06 TCGA-AA-A00N-01 1 152079723 152079723 G T TCHH 3'UTR 0.36 TCGA-AA-A00N-01 1 152188103 152188103 G A HRNR Missense_Mutation p.S2001F 0.05 unknown(0) TCGA-AA-A00N-01 1 152275383 152275383 G T FLG Missense_Mutation p.H3993Q 0.22 unknown(0) TCGA-AA-A00N-01 1 152279093 152279093 G A FLG Missense_Mutation p.P2757S 0.07 benign(0.001) TCGA-AA-A00N-01 1 152280161 152280161 G A FLG Missense_Mutation p.R2401C 0.29 probably_damaging(0.982) TCGA-AA-A00N-01 1 152281467 152281467 G A FLG Silent p.A1965A 0.28 TCGA-AA-A00N-01 1 152281669 152281669 G A FLG Missense_Mutation p.S1898L 0.18 possibly_damaging(0.651) TCGA-AA-A00N-01 1 152282673 152282673 T C FLG Silent p.E1563E 0.11 TCGA-AA-A00N-01 1 152287057 152287057 C A FLG Missense_Mutation p.R102I 0.06 possibly_damaging(0.546) TCGA-AA-A00N-01 1 152324155 152324155 C T FLG2 Missense_Mutation p.S2036N 0.06 benign(0.235) TCGA-AA-A00N-01 1 152324678 152324678 G T FLG2 Missense_Mutation p.H1862N 0.23 benign(0.28) TCGA-AA-A00N-01 1 152648958 152648958 G A LCE2C 3'UTR 0.23 TCGA-AA-A00N-01 1 152671889 152671889 A G LCE2A 3'UTR 0.05 TCGA-AA-A00N-01 1 152777548 152777548 C A LCE1C 3'UTR 0.06 TCGA-AA-A00N-01 1 152944840 152944840 C T SPRR4 3'UTR 0.20 TCGA-AA-A00N-01 1 153084971 153084971 C A SPRR2F 3'UTR 0.17 TCGA-AA-A00N-01 1 153752344 153752344 C T SLC27A3 Missense_Mutation p.R687W 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-AA-A00N-01 1 153906294 153906294 C T DENND4B Missense_Mutation p.D999N 0.08 tolerated(0.15) probably_damaging(0.99) TCGA-AA-A00N-01 1 153911500 153911500 C T DENND4B Missense_Mutation p.R614H 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 153923773 153923773 G A CRTC2 Missense_Mutation p.S456L 0.20 deleterious(0.04) probably_damaging(0.945) TCGA-AA-A00N-01 1 154026780 154026780 A G NUP210L Missense_Mutation p.I1136T 0.24 tolerated(0.31) benign(0) TCGA-AA-A00N-01 1 154029383 154029383 G T NUP210L Missense_Mutation p.L1050I 0.16 tolerated(0.13) possibly_damaging(0.638) TCGA-AA-A00N-01 1 154243301 154243301 T C UBAP2L 3'UTR 0.23 TCGA-AA-A00N-01 1 15429939 15429939 C T KAZN Nonsense_Mutation p.R622* 0.22 TCGA-AA-A00N-01 1 15441006 15441006 G T KAZN Missense_Mutation p.D735Y 0.21 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-AA-A00N-01 1 154519897 154519897 C T TDRD10 Missense_Mutation p.S322L 0.30 deleterious(0.04) possibly_damaging(0.789) TCGA-AA-A00N-01 1 154548274 154548274 G A CHRNB2 Missense_Mutation p.D459N 0.04 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 154841921 154841921 C T KCNN3 Missense_Mutation p.A174T 0.21 deleterious(0.02) probably_damaging(0.982) TCGA-AA-A00N-01 1 154931584 154931584 G A PYGO2 Missense_Mutation p.R298W 0.19 deleterious(0.01) possibly_damaging(0.876) TCGA-AA-A00N-01 1 155148088 155148088 C A TRIM46 Missense_Mutation p.P97H 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 155209837 155209837 G A GBA Silent p.G49G 0.11 TCGA-AA-A00N-01 1 155230152 155230152 C T SCAMP3 Silent p.E119E 0.18 TCGA-AA-A00N-01 1 155291351 155291351 G A RUSC1 Intron 0.16 TCGA-AA-A00N-01 1 155450429 155450429 G A ASH1L Silent p.N744N 0.09 TCGA-AA-A00N-01 1 155717418 155717418 G A GON4L 3'Flank 0.13 TCGA-AA-A00N-01 1 155735933 155735933 G A GON4L Nonsense_Mutation p.R1111* 0.06 TCGA-AA-A00N-01 1 155979301 155979301 C A SSR2 3'UTR 0.27 TCGA-AA-A00N-01 1 156100517 156100517 C T LMNA Missense_Mutation p.R156C 0.17 deleterious(0) possibly_damaging(0.749) TCGA-AA-A00N-01 1 156222239 156222239 G A SMG5 Missense_Mutation p.R907W 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 156347171 156347171 C T RHBG Silent p.S89S 0.18 TCGA-AA-A00N-01 1 156593735 156593735 G A HAPLN2 Silent p.E74E 0.08 TCGA-AA-A00N-01 1 156642228 156642228 T C NES Silent p.E584E 0.18 TCGA-AA-A00N-01 1 156669716 156669716 G T CRABP2 3'UTR 0.27 TCGA-AA-A00N-01 1 156706426 156706426 T A RRNAD1 Missense_Mutation p.F437I 0.14 tolerated(0.61) benign(0.007) TCGA-AA-A00N-01 1 156785630 156785630 G A SH2D2A Intron 0.10 TCGA-AA-A00N-01 1 156878099 156878099 C G PEAR1 Missense_Mutation p.A361G 0.12 tolerated(0.36) benign(0.005) TCGA-AA-A00N-01 1 15693980 15693980 A G FHAD1 Missense_Mutation p.K272R 0.17 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 1 157062325 157062325 A C ETV3L 3'UTR 0.21 TCGA-AA-A00N-01 1 157095609 157095609 T G ETV3 Missense_Mutation p.K188T 0.19 tolerated(0.85) benign(0.062) TCGA-AA-A00N-01 1 15769941 15769941 A G CTRC Silent p.A128A 0.28 TCGA-AA-A00N-01 1 157803103 157803103 G A CD5L Silent p.G306G 0.09 TCGA-AA-A00N-01 1 158532668 158532668 C T OR6P1 Missense_Mutation p.A243T 0.21 deleterious(0.02) benign(0.004) TCGA-AA-A00N-01 1 158533211 158533211 A C OR6P1 Missense_Mutation p.F62V 0.20 deleterious(0) probably_damaging(0.977) TCGA-AA-A00N-01 1 158549179 158549179 T C OR10X1 Missense_Mutation p.I171V 0.28 tolerated(0.99) benign(0.026) TCGA-AA-A00N-01 1 158549611 158549611 C T OR10X1 Missense_Mutation p.E27K 0.27 deleterious(0.03) possibly_damaging(0.773) TCGA-AA-A00N-01 1 158576934 158576934 A G OR10Z1 Missense_Mutation p.K236E 0.23 deleterious(0) possibly_damaging(0.685) TCGA-AA-A00N-01 1 158585043 158585043 G A SPTA1 Missense_Mutation p.R2251W 0.06 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 1 158596748 158596748 G T SPTA1 Missense_Mutation p.A1905D 0.09 tolerated(0.12) possibly_damaging(0.649) TCGA-AA-A00N-01 1 158612686 158612686 T C SPTA1 Missense_Mutation p.D1508G 0.14 deleterious(0) possibly_damaging(0.865) TCGA-AA-A00N-01 1 158669554 158669554 C A OR6K2 Nonsense_Mutation p.E297* 0.31 TCGA-AA-A00N-01 1 158746781 158746781 C A OR6N2 Missense_Mutation p.M215I 0.07 tolerated(0.35) benign(0.004) TCGA-AA-A00N-01 1 158815562 158815562 C T MNDA Silent p.F252F 0.07 TCGA-AA-A00N-01 1 159163760 159163760 C T CADM3 Silent p.I241I 0.20 TCGA-AA-A00N-01 1 159166799 159166799 G T CADM3 Missense_Mutation p.A335S 0.15 deleterious(0.02) probably_damaging(0.979) TCGA-AA-A00N-01 1 159283505 159283505 C A OR10J3 Missense_Mutation p.K315N 0.26 tolerated(0.19) benign(0.036) TCGA-AA-A00N-01 1 159409723 159409723 A G OR10J1 Missense_Mutation p.I59V 0.14 tolerated(0.84) benign(0.075) TCGA-AA-A00N-01 1 159409946 159409946 G A OR10J1 Missense_Mutation p.R133H 0.19 tolerated(0.09) benign(0.08) TCGA-AA-A00N-01 1 159505015 159505015 C T OR10J5 Silent p.P261P 0.12 TCGA-AA-A00N-01 1 159684337 159684337 C T CRP 5'UTR 0.10 TCGA-AA-A00N-01 1 159752179 159752179 C T DUSP23 3'UTR 0.22 TCGA-AA-A00N-01 1 159796694 159796694 C A SLAMF8 Silent p.V2V 0.26 TCGA-AA-A00N-01 1 159807815 159807815 C A C1orf204 Nonsense_Mutation p.E201* 0.17 TCGA-AA-A00N-01 1 15987421 15987421 C T RSC1A1 Missense_Mutation p.T353M 0.11 deleterious(0) probably_damaging(0.957) TCGA-AA-A00N-01 1 160063674 160063674 G A IGSF8 Missense_Mutation p.R244C 0.31 deleterious(0.05) possibly_damaging(0.614) TCGA-AA-A00N-01 1 160100265 160100265 G A ATP1A2 Missense_Mutation p.D569N 0.20 tolerated(0.27) benign(0.157) TCGA-AA-A00N-01 1 160105028 160105028 C A ATP1A2 Silent p.V686V 0.19 TCGA-AA-A00N-01 1 160106412 160106412 G A ATP1A2 Silent p.E872E 0.25 TCGA-AA-A00N-01 1 160111175 160111175 T C ATP1A2 3'UTR 0.15 TCGA-AA-A00N-01 1 160134055 160134055 C T ATP1A4 Silent p.I296I 0.03 TCGA-AA-A00N-01 1 160141212 160141212 C A ATP1A4 Missense_Mutation p.L555M 0.08 tolerated(0.19) benign(0.167) TCGA-AA-A00N-01 1 160144033 160144033 C T ATP1A4 Silent p.V708V 0.24 TCGA-AA-A00N-01 1 160165267 160165267 G T CASQ1 Missense_Mutation p.E198D 0.09 tolerated(0.14) benign(0.006) TCGA-AA-A00N-01 1 160319950 160319950 G A NCSTN Nonsense_Mutation p.W164* 0.20 TCGA-AA-A00N-01 1 160341682 160341682 A C NHLH1 3'UTR 0.31 TCGA-AA-A00N-01 1 160342059 160342059 G T NHLH1 3'UTR 0.23 TCGA-AA-A00N-01 1 160388956 160388956 T A VANGL2 Silent p.S119S 0.30 TCGA-AA-A00N-01 1 160721170 160721170 C T SLAMF7 Missense_Mutation p.R269W 0.20 deleterious(0) possibly_damaging(0.702) TCGA-AA-A00N-01 1 160784472 160784472 C T LY9 Silent p.D331D 0.24 TCGA-AA-A00N-01 1 160811285 160811285 G T CD244 Missense_Mutation p.L129M 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A00N-01 1 160846352 160846352 T G ITLN1 3'UTR 0.21 TCGA-AA-A00N-01 1 161193180 161193180 G A APOA2 Silent p.L4L 0.07 TCGA-AA-A00N-01 1 161203075 161203075 G A NR1I3 Missense_Mutation p.R98W 0.25 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 1 161207863 161207863 C A NR1I3 5'UTR 0.21 TCGA-AA-A00N-01 1 161683010 161683010 C A FCRLA Missense_Mutation p.S330Y 0.18 deleterious(0.03) possibly_damaging(0.474) TCGA-AA-A00N-01 1 161761932 161761932 A C ATF6 Missense_Mutation p.K168T 0.32 deleterious(0.01) probably_damaging(0.926) TCGA-AA-A00N-01 1 161771849 161771849 G A ATF6 Silent p.T232T 0.15 TCGA-AA-A00N-01 1 161970074 161970074 C T OLFML2B Missense_Mutation p.E260K 0.19 tolerated(0.3) benign(0.003) TCGA-AA-A00N-01 1 161993153 161993153 A C OLFML2B Missense_Mutation p.I23S 0.12 tolerated(0.88) benign(0.001) TCGA-AA-A00N-01 1 162344380 162344380 C T C1orf111 Missense_Mutation p.G82R 0.28 tolerated(0.12) benign(0.187) TCGA-AA-A00N-01 1 162353087 162353087 C A C1orf226 Missense_Mutation p.L188I 0.19 deleterious(0.03) possibly_damaging(0.749) TCGA-AA-A00N-01 1 16242692 16242692 G T SPEN Missense_Mutation p.R438I 0.15 benign(0.188) TCGA-AA-A00N-01 1 162492403 162492403 A C UHMK1 3'UTR 0.17 TCGA-AA-A00N-01 1 16255105 16255105 G T SPEN Missense_Mutation p.K790N 0.29 probably_damaging(0.996) TCGA-AA-A00N-01 1 16256696 16256696 G A SPEN Missense_Mutation p.A1321T 0.16 probably_damaging(0.995) TCGA-AA-A00N-01 1 16259754 16259754 G A SPEN Missense_Mutation p.R2340H 0.07 probably_damaging(0.996) TCGA-AA-A00N-01 1 162748503 162748503 G A DDR2 Missense_Mutation p.R806Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 1 163310211 163310211 C T NUF2 Missense_Mutation p.R222C 0.18 deleterious(0.01) benign(0.007) TCGA-AA-A00N-01 1 163313614 163313614 A G NUF2 Missense_Mutation p.Y254C 0.08 tolerated(0.18) benign(0.048) TCGA-AA-A00N-01 1 165322378 165322378 T G LMX1A Missense_Mutation p.K66N 0.19 tolerated(0.15) possibly_damaging(0.665) TCGA-AA-A00N-01 1 165378919 165378919 C A RXRG Nonsense_Mutation p.E308* 0.24 TCGA-AA-A00N-01 1 1654194 1654194 G A CDK11A Nonsense_Mutation p.R22* 0.22 TCGA-AA-A00N-01 1 16582282 16582282 G A FBXO42 Missense_Mutation p.P231S 0.19 tolerated(0.06) possibly_damaging(0.908) TCGA-AA-A00N-01 1 166818561 166818561 C T POGK Missense_Mutation p.R249W 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-AA-A00N-01 1 166959183 166959183 C T MAEL Intron 0.28 TCGA-AA-A00N-01 1 166990396 166990396 T C MAEL Silent p.I372I 0.16 TCGA-AA-A00N-01 1 167805771 167805771 C A ADCY10 Nonsense_Mutation p.E1029* 0.24 TCGA-AA-A00N-01 1 167960550 167960550 C T DCAF6 Missense_Mutation p.R221W 0.18 deleterious(0) possibly_damaging(0.736) TCGA-AA-A00N-01 1 168215815 168215815 G T SFT2D2 3'UTR 0.21 TCGA-AA-A00N-01 1 169267888 169267888 C T NME7 Missense_Mutation p.R185H 0.16 deleterious(0.01) possibly_damaging(0.87) TCGA-AA-A00N-01 1 169487738 169487738 G A F5 Missense_Mutation p.S2086L 0.29 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 1 169562908 169562908 G T SELP Missense_Mutation p.S781Y 0.20 deleterious(0) possibly_damaging(0.847) TCGA-AA-A00N-01 1 169580734 169580734 A G SELP Silent p.C381C 0.16 TCGA-AA-A00N-01 1 169588410 169588410 G T SELP Silent p.V17V 0.26 TCGA-AA-A00N-01 1 169773235 169773235 C A C1orf112 Missense_Mutation p.S111Y 0.17 tolerated(0.07) probably_damaging(0.978) TCGA-AA-A00N-01 1 169823675 169823675 G A SCYL3 Silent p.I635I 0.18 TCGA-AA-A00N-01 1 169824966 169824966 C T SCYL3 Missense_Mutation p.R482Q 0.10 tolerated(0.48) benign(0.01) TCGA-AA-A00N-01 1 170914660 170914660 G A MROH9 Splice_Site 0.20 TCGA-AA-A00N-01 1 170916671 170916671 G A MROH9 Missense_Mutation p.S10N 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.466) TCGA-AA-A00N-01 1 170964652 170964652 G A MROH9 Silent p.P439P 0.07 TCGA-AA-A00N-01 1 170967331 170967331 G T MROH9 Missense_Mutation p.E504D 0.14 deleterious(0.03) benign(0.149) TCGA-AA-A00N-01 1 171076900 171076900 G T FMO3 Nonsense_Mutation p.E136* 0.17 TCGA-AA-A00N-01 1 171083190 171083190 A C FMO3 Missense_Mutation p.S291R 0.13 tolerated(0.99) benign(0.001) TCGA-AA-A00N-01 1 171086513 171086513 C A FMO3 Missense_Mutation p.F510L 0.26 tolerated(0.68) benign(0.004) TCGA-AA-A00N-01 1 171177993 171177993 C T FMO2 Silent p.L439L 0.17 TCGA-AA-A00N-01 1 171510825 171510825 G A PRRC2C Missense_Mutation p.R1405Q 0.17 unknown(0) TCGA-AA-A00N-01 1 171553588 171553588 C A PRRC2C Missense_Mutation p.L2556I 0.17 benign(0.391) TCGA-AA-A00N-01 1 171679880 171679880 C A VAMP4 Missense_Mutation p.R80I 0.09 deleterious(0) probably_damaging(0.972) TCGA-AA-A00N-01 1 171697709 171697709 C A VAMP4 Missense_Mutation p.R23I 0.27 tolerated(0.05) benign(0.084) TCGA-AA-A00N-01 1 172007484 172007484 C T DNM3 Missense_Mutation p.T292I 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A00N-01 1 172007492 172007492 A G DNM3 Missense_Mutation p.N295D 0.08 tolerated(1) benign(0.004) TCGA-AA-A00N-01 1 1721936 1721936 G A GNB1 Silent p.F199F 0.27 TCGA-AA-A00N-01 1 172278007 172278007 A C DNM3 Intron 0.26 TCGA-AA-A00N-01 1 172389903 172389903 C T C1orf105 5'UTR 0.29 TCGA-AA-A00N-01 1 172526826 172526827 - A SUCO Frame_Shift_Ins p.G210Rfs*9 0.24 TCGA-AA-A00N-01 1 173010807 173010807 G A TNFSF18 Silent p.C100C 0.12 TCGA-AA-A00N-01 1 17332001 17332001 G A ATP13A2 Silent p.V52V 0.20 TCGA-AA-A00N-01 1 173454561 173454561 A G PRDX6 Missense_Mutation p.D105G 0.16 deleterious(0.04) possibly_damaging(0.752) TCGA-AA-A00N-01 1 173499145 173499145 G A SLC9C2 Missense_Mutation p.R738C 0.39 deleterious(0) possibly_damaging(0.66) TCGA-AA-A00N-01 1 173502853 173502853 G T SLC9C2 Silent p.I686I 0.15 TCGA-AA-A00N-01 1 173517637 173517637 T C SLC9C2 Missense_Mutation p.H451R 0.15 tolerated(0.16) probably_damaging(0.999) TCGA-AA-A00N-01 1 173596226 173596226 C T ANKRD45 Missense_Mutation p.G190E 0.35 deleterious(0.01) probably_damaging(0.939) TCGA-AA-A00N-01 1 173726263 173726263 C T KLHL20 Silent p.G372G 0.17 TCGA-AA-A00N-01 1 173930955 173930955 A T RC3H1 Missense_Mutation p.Y704N 0.06 deleterious(0.01) benign(0.405) TCGA-AA-A00N-01 1 173952672 173952672 C T RC3H1 Missense_Mutation p.R159Q 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A00N-01 1 174417375 174417375 C T GPR52 Silent p.F42F 0.21 TCGA-AA-A00N-01 1 174418001 174418001 C A GPR52 Missense_Mutation p.S251Y 0.15 deleterious(0.03) benign(0.166) TCGA-AA-A00N-01 1 174945284 174945284 G A RABGAP1L Missense_Mutation p.E179K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A00N-01 1 175066552 175066552 G T TNN Splice_Site p.X530_splice 0.07 TCGA-AA-A00N-01 1 175086176 175086176 C T TNN Missense_Mutation p.R741C 0.35 deleterious(0.01) probably_damaging(0.954) TCGA-AA-A00N-01 1 175325554 175325554 G A TNR Missense_Mutation p.R1007W 0.25 deleterious(0) possibly_damaging(0.67) TCGA-AA-A00N-01 1 175355352 175355352 G A TNR Silent p.V531V 0.13 TCGA-AA-A00N-01 1 175372292 175372292 G A TNR Silent p.G320G 0.20 TCGA-AA-A00N-01 1 175372342 175372342 G A TNR Nonsense_Mutation p.R304* 0.08 TCGA-AA-A00N-01 1 175375397 175375397 G A TNR Nonsense_Mutation p.R152* 0.52 TCGA-AA-A00N-01 1 176175717 176175717 T C RFWD2 Missense_Mutation p.D133G 0.17 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 1 176175810 176175810 C T RFWD2 Missense_Mutation p.S102N 0.09 tolerated(0.22) benign(0.001) TCGA-AA-A00N-01 1 176525583 176525583 A C PAPPA2 Missense_Mutation p.Q42P 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.528) TCGA-AA-A00N-01 1 176525739 176525739 G A PAPPA2 Missense_Mutation p.R94H 0.26 tolerated_low_confidence(0.61) benign(0) TCGA-AA-A00N-01 1 176738806 176738806 G A PAPPA2 Missense_Mutation p.D1463N 0.17 deleterious(0.03) probably_damaging(1) TCGA-AA-A00N-01 1 176993765 176993765 G A ASTN1 Silent p.L408L 0.07 TCGA-AA-A00N-01 1 177249739 177249739 G A BRINP2 Missense_Mutation p.R476H 0.25 deleterious(0.01) possibly_damaging(0.702) TCGA-AA-A00N-01 1 177915480 177915480 C T SEC16B Intron 0.11 TCGA-AA-A00N-01 1 177917064 177917064 T G SEC16B Missense_Mutation p.K520T 0.26 tolerated(0.24) benign(0.117) TCGA-AA-A00N-01 1 177930774 177930774 C T SEC16B Silent p.P246P 0.16 TCGA-AA-A00N-01 1 178427189 178427189 C T RASAL2 Missense_Mutation p.S921L 0.24 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 1 179033562 179033562 G A FAM20B Missense_Mutation p.R290H 0.06 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 179051476 179051476 G T TOR3A Missense_Mutation p.W71C 0.22 deleterious(0) probably_damaging(0.94) TCGA-AA-A00N-01 1 179078352 179078352 C T ABL2 Missense_Mutation p.E684K 0.18 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-AA-A00N-01 1 179380336 179380336 G T AXDND1 Missense_Mutation p.D389Y 0.20 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 1 179437776 179437776 C T AXDND1 Missense_Mutation p.S666L 0.14 tolerated(0.33) benign(0) TCGA-AA-A00N-01 1 179526215 179526215 G A NPHS2 Nonsense_Mutation p.R229* 0.14 TCGA-AA-A00N-01 1 179561887 179561887 G A TDRD5 Missense_Mutation p.R46Q 0.08 tolerated(0.11) possibly_damaging(0.63) TCGA-AA-A00N-01 1 179564869 179564869 G A TDRD5 Silent p.P249P 0.12 TCGA-AA-A00N-01 1 179623381 179623381 T G TDRD5 Missense_Mutation p.S736A 0.29 tolerated(0.53) benign(0.015) TCGA-AA-A00N-01 1 180080237 180080237 G T CEP350 Missense_Mutation p.D3099Y 0.09 probably_damaging(0.992) TCGA-AA-A00N-01 1 180165751 180165751 A C QSOX1 Missense_Mutation p.K608T 0.30 tolerated(0.23) benign(0.07) TCGA-AA-A00N-01 1 180461442 180461442 C T ACBD6 Missense_Mutation p.A116T 0.32 tolerated(0.41) probably_damaging(0.94) TCGA-AA-A00N-01 1 180772531 180772531 C T XPR1 Silent p.L77L 0.16 TCGA-AA-A00N-01 1 180772622 180772622 C T XPR1 Nonsense_Mutation p.R108* 0.22 TCGA-AA-A00N-01 1 180793938 180793938 C A XPR1 Silent p.I271I 0.21 TCGA-AA-A00N-01 1 180853152 180853152 C T XPR1 Missense_Mutation p.R681C 0.17 tolerated(0.11) benign(0.009) TCGA-AA-A00N-01 1 180887045 180887045 G T KIAA1614 Missense_Mutation p.Q352H 0.21 tolerated(0.06) probably_damaging(0.988) TCGA-AA-A00N-01 1 181021437 181021437 C T MR1 Missense_Mutation p.A224V 0.12 tolerated(0.06) possibly_damaging(0.883) TCGA-AA-A00N-01 1 181059722 181059722 G T IER5 3'UTR 0.22 TCGA-AA-A00N-01 1 18152558 18152558 G A ACTL8 Silent p.P215P 0.30 TCGA-AA-A00N-01 1 181702681 181702681 G A CACNA1E Silent p.V1019V 0.16 TCGA-AA-A00N-01 1 181724489 181724489 C A CACNA1E Missense_Mutation p.F1315L 0.21 deleterious(0.03) benign(0.031) TCGA-AA-A00N-01 1 181764067 181764067 C T CACNA1E Missense_Mutation p.S2032L 0.23 tolerated(0.69) possibly_damaging(0.706) TCGA-AA-A00N-01 1 182027037 182027037 C T ZNF648 Missense_Mutation p.D37N 0.26 tolerated_low_confidence(0.06) benign(0.017) TCGA-AA-A00N-01 1 182369665 182369665 G T TEDDM1 5'UTR 0.18 TCGA-AA-A00N-01 1 182555637 182555637 G A RNASEL Missense_Mutation p.A102V 0.13 tolerated(0.75) benign(0.002) TCGA-AA-A00N-01 1 182571247 182571247 C T RGS16 Missense_Mutation p.A81T 0.16 tolerated(0.17) benign(0.01) TCGA-AA-A00N-01 1 182638853 182638853 G A RGS8 Intron 0.21 TCGA-AA-A00N-01 1 183190045 183190045 C T LAMC2 Missense_Mutation p.R197C 0.10 tolerated(0.05) benign(0.39) TCGA-AA-A00N-01 1 183212339 183212339 G A LAMC2 Missense_Mutation p.R1129Q 0.17 tolerated(0.24) benign(0.003) TCGA-AA-A00N-01 1 183273839 183273839 G A NMNAT2 Intron 0.20 TCGA-AA-A00N-01 1 183866955 183866955 A C RGL1 Missense_Mutation p.K420T 0.10 deleterious(0.03) probably_damaging(1) TCGA-AA-A00N-01 1 183913415 183913415 C T COLGALT2 Missense_Mutation p.D438N 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 183942800 183942800 G A COLGALT2 Silent p.L193L 0.20 TCGA-AA-A00N-01 1 183944265 183944265 C T COLGALT2 Missense_Mutation p.R153Q 0.22 tolerated(0.34) benign(0.041) TCGA-AA-A00N-01 1 184772774 184772774 A C FAM129A Missense_Mutation p.L500R 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 184772798 184772798 C T FAM129A Missense_Mutation p.R492Q 0.22 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 1 184853808 184853808 A C FAM129A Missense_Mutation p.F187C 0.11 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 1 185704129 185704129 G T HMCN1 Missense_Mutation p.R73I 0.08 probably_damaging(0.985) TCGA-AA-A00N-01 1 185878629 185878629 G A HMCN1 Missense_Mutation p.R261H 0.21 benign(0) TCGA-AA-A00N-01 1 186277995 186277995 G A PRG4 Silent p.T1048T 0.18 TCGA-AA-A00N-01 1 186289548 186289548 G A TPR Missense_Mutation p.S2155L 0.46 benign(0.009) TCGA-AA-A00N-01 1 186320504 186320504 T G TPR Missense_Mutation p.E856D 0.20 benign(0.217) TCGA-AA-A00N-01 1 18703368 18703368 C T IGSF21 Silent p.F392F 0.18 TCGA-AA-A00N-01 1 18810563 18810563 G A KLHDC7A 3'UTR 0.15 TCGA-AA-A00N-01 1 190067849 190067849 G A BRINP3 Missense_Mutation p.L534F 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A00N-01 1 1920015 1920015 G A C1orf222 Missense_Mutation p.R69W 0.21 deleterious(0) probably_damaging(0.942) TCGA-AA-A00N-01 1 192627495 192627495 G T RGS13 Nonsense_Mutation p.E98* 0.33 TCGA-AA-A00N-01 1 193051368 193051368 T G TROVE2 Missense_Mutation p.M419R 0.16 deleterious(0.01) benign(0.29) TCGA-AA-A00N-01 1 193099338 193099338 G A CDC73 Missense_Mutation p.R91Q 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 193150285 193150285 G T B3GALT2 Missense_Mutation p.F136L 0.17 deleterious(0.03) benign(0.079) TCGA-AA-A00N-01 1 193150491 193150491 G A B3GALT2 Missense_Mutation p.R68W 0.18 deleterious(0.02) possibly_damaging(0.874) TCGA-AA-A00N-01 1 1956465 1956465 C T GABRD Silent p.Y51Y 0.15 TCGA-AA-A00N-01 1 19593676 19593676 G T AKR7L 3'UTR 0.20 TCGA-AA-A00N-01 1 196303054 196303054 C T KCNT2 Silent p.S640S 0.22 TCGA-AA-A00N-01 1 19632620 19632620 G A AKR7A2 Silent p.F270F 0.14 TCGA-AA-A00N-01 1 196801182 196801182 C A CFHR1 3'UTR 0.15 TCGA-AA-A00N-01 1 196883716 196883716 C T CFHR4 Silent p.Y423Y 0.17 TCGA-AA-A00N-01 1 196977766 196977766 C T CFHR5 Nonsense_Mutation p.R555* 0.06 TCGA-AA-A00N-01 1 197069759 197069759 T G ASPM Missense_Mutation p.Q2874H 0.20 tolerated(0.08) probably_damaging(0.976) TCGA-AA-A00N-01 1 197071123 197071123 A G ASPM Missense_Mutation p.S2420P 0.14 tolerated(0.3) possibly_damaging(0.811) TCGA-AA-A00N-01 1 197071969 197071969 T C ASPM Missense_Mutation p.T2138A 0.27 tolerated(1) benign(0.001) TCGA-AA-A00N-01 1 197390405 197390405 G A CRB1 Missense_Mutation p.A483T 0.29 tolerated(0.64) benign(0.002) TCGA-AA-A00N-01 1 197390707 197390707 C T CRB1 Silent p.I583I 0.25 TCGA-AA-A00N-01 1 197396750 197396750 C T CRB1 Silent p.V765V 0.18 TCGA-AA-A00N-01 1 197886659 197886659 G A LHX9 5'UTR 0.08 TCGA-AA-A00N-01 1 198687383 198687383 C T PTPRC Silent p.C537C 0.13 TCGA-AA-A00N-01 1 200573037 200573037 C T KIF14 Missense_Mutation p.R598Q 0.32 deleterious(0.01) probably_damaging(0.938) TCGA-AA-A00N-01 1 200843016 200843016 C T GPR25 Missense_Mutation p.A284V 0.22 tolerated(0.1) benign(0.064) TCGA-AA-A00N-01 1 200876971 200876971 C T C1orf106 Missense_Mutation p.A177V 0.30 tolerated(0.06) benign(0.018) TCGA-AA-A00N-01 1 201052399 201052399 G A CACNA1S Silent p.I428I 0.09 TCGA-AA-A00N-01 1 201353948 201353948 C A LAD1 Nonsense_Mutation p.E383* 0.21 TCGA-AA-A00N-01 1 201456048 201456048 G A CSRP1 Intron 0.28 TCGA-AA-A00N-01 1 201777974 201777974 C A NAV1 Silent p.S1394S 0.10 TCGA-AA-A00N-01 1 201798403 201798403 G T IPO9 Missense_Mutation p.K22N 0.23 deleterious(0) possibly_damaging(0.602) TCGA-AA-A00N-01 1 201826283 201826283 C A IPO9 Missense_Mutation p.F394L 0.08 deleterious(0.05) benign(0.011) TCGA-AA-A00N-01 1 202119277 202119277 T G PTPN7 Intron 0.25 TCGA-AA-A00N-01 1 202399863 202399863 G A PPP1R12B Missense_Mutation p.R309Q 0.45 deleterious(0.02) possibly_damaging(0.582) TCGA-AA-A00N-01 1 202574754 202574754 C A SYT2 Missense_Mutation p.E49D 0.19 tolerated(0.42) benign(0.001) TCGA-AA-A00N-01 1 202711825 202711825 G A KDM5B Missense_Mutation p.A811V 0.13 tolerated(0.24) possibly_damaging(0.864) TCGA-AA-A00N-01 1 203025587 203025587 C T PPFIA4 Missense_Mutation p.R225W 0.21 deleterious(0.01) benign(0.012) TCGA-AA-A00N-01 1 203025622 203025622 G T PPFIA4 Missense_Mutation p.Q236H 0.25 tolerated(0.53) benign(0.008) TCGA-AA-A00N-01 1 203028386 203028386 C T PPFIA4 Missense_Mutation p.R324W 0.20 deleterious(0) possibly_damaging(0.884) TCGA-AA-A00N-01 1 203029425 203029425 G T PPFIA4 Silent p.S382S 0.22 TCGA-AA-A00N-01 1 203153736 203153736 C G CHI3L1 Missense_Mutation p.L94F 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 1 203831347 203831347 A C SNRPE Missense_Mutation p.Q26H 0.30 deleterious(0.01) possibly_damaging(0.866) TCGA-AA-A00N-01 1 20470046 20470046 C T PLA2G2F Silent p.L93L 0.16 TCGA-AA-A00N-01 1 204913521 204913521 A C NFASC Missense_Mutation p.E26D 0.24 tolerated(0.21) possibly_damaging(0.839) TCGA-AA-A00N-01 1 204943899 204943899 C T NFASC Silent p.V502V 0.15 TCGA-AA-A00N-01 1 205138809 205138809 C T DSTYK Missense_Mutation p.R269Q 0.22 tolerated(0.14) benign(0.006) TCGA-AA-A00N-01 1 205138816 205138816 C T DSTYK Missense_Mutation p.E267K 0.21 tolerated(0.34) benign(0.006) TCGA-AA-A00N-01 1 205492326 205492326 C T CDK18 Missense_Mutation p.R11C 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A00N-01 1 205589108 205589108 C T ELK4 Missense_Mutation p.A356T 0.21 deleterious(0) possibly_damaging(0.862) TCGA-AA-A00N-01 1 205739422 205739422 G T RAB7L1 3'UTR 0.19 TCGA-AA-A00N-01 1 205740743 205740743 G A RAB7L1 Missense_Mutation p.R79W 0.16 deleterious(0) probably_damaging(0.985) TCGA-AA-A00N-01 1 205890881 205890881 G T SLC26A9 Missense_Mutation p.S623Y 0.15 deleterious(0) possibly_damaging(0.829) TCGA-AA-A00N-01 1 206239338 206239338 G T C1orf186 3'UTR 0.15 TCGA-AA-A00N-01 1 206317631 206317631 G A CTSE Missense_Mutation p.G19R 0.22 tolerated(0.48) benign(0.013) TCGA-AA-A00N-01 1 206821627 206821627 G A DYRK3 Missense_Mutation p.E362K 0.24 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 1 206902749 206902749 G A MAPKAPK2 Missense_Mutation p.E165K 0.27 tolerated(0.17) benign(0.064) TCGA-AA-A00N-01 1 207039324 207039324 C T IL20 Nonsense_Mutation p.R43* 0.22 TCGA-AA-A00N-01 1 207105148 207105148 C T PIGR Splice_Site p.X670_splice 0.15 TCGA-AA-A00N-01 1 207108873 207108873 C T PIGR Missense_Mutation p.D446N 0.23 tolerated(0.11) benign(0.294) TCGA-AA-A00N-01 1 207273299 207273299 G T C4BPB 3'UTR 0.25 TCGA-AA-A00N-01 1 207639994 207639994 A C CR2 Missense_Mutation p.K61T 0.08 tolerated(0.13) possibly_damaging(0.527) TCGA-AA-A00N-01 1 207642169 207642169 G A CR2 Missense_Mutation p.R220Q 0.06 tolerated(0.98) benign(0.004) TCGA-AA-A00N-01 1 207644348 207644348 C T CR2 Missense_Mutation p.A470V 0.21 deleterious(0.03) benign(0.002) TCGA-AA-A00N-01 1 207741173 207741173 C A CR1 Silent p.I1319I 0.13 TCGA-AA-A00N-01 1 207851610 207851610 C T CR1L Silent p.F115F 0.08 TCGA-AA-A00N-01 1 207890871 207890871 G T CR1L Missense_Mutation p.D493Y 0.17 tolerated(1) possibly_damaging(0.743) TCGA-AA-A00N-01 1 20915769 20915769 C A CDA Silent p.I49I 0.11 TCGA-AA-A00N-01 1 20972169 20972169 C T PINK1 Missense_Mutation p.A359V 0.30 tolerated(0.05) probably_damaging(0.997) TCGA-AA-A00N-01 1 209803114 209803114 C T LAMB3 Missense_Mutation p.R367H 0.16 deleterious(0.03) probably_damaging(0.978) TCGA-AA-A00N-01 1 209849026 209849026 C T G0S2 5'UTR 0.27 TCGA-AA-A00N-01 1 210004240 210004240 G A DIEXF Silent p.K80K 0.18 TCGA-AA-A00N-01 1 210010440 210010440 A C DIEXF Missense_Mutation p.N316H 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 210407341 210407341 A T SERTAD4 Intron 0.23 TCGA-AA-A00N-01 1 210415585 210415585 G T SERTAD4 Missense_Mutation p.R325I 0.18 deleterious(0) benign(0.091) TCGA-AA-A00N-01 1 211280720 211280720 C T KCNH1 Splice_Site p.X27_splice 0.18 TCGA-AA-A00N-01 1 21186970 21186970 G T EIF4G3 Missense_Mutation p.T1001N 0.21 deleterious(0.01) possibly_damaging(0.848) TCGA-AA-A00N-01 1 212274119 212274119 A C DTL Missense_Mutation p.E596A 0.11 tolerated(0.15) benign(0.044) TCGA-AA-A00N-01 1 212799468 212799468 G A FAM71A Missense_Mutation p.A417T 0.22 tolerated(0.36) benign(0.006) TCGA-AA-A00N-01 1 212800101 212800101 G T FAM71A 3'UTR 0.29 TCGA-AA-A00N-01 1 212911823 212911823 C A NSL1 Missense_Mutation p.R258I 0.10 tolerated(0.11) probably_damaging(0.999) TCGA-AA-A00N-01 1 212988455 212988455 C T TATDN3 Missense_Mutation p.A268V 0.22 deleterious(0.02) possibly_damaging(0.776) TCGA-AA-A00N-01 1 213178594 213178594 G A ANGEL2 Silent p.C305C 0.12 TCGA-AA-A00N-01 1 213178703 213178703 T C ANGEL2 Missense_Mutation p.N269S 0.12 tolerated(0.85) possibly_damaging(0.629) TCGA-AA-A00N-01 1 214170754 214170754 C T PROX1 Silent p.V292V 0.18 TCGA-AA-A00N-01 1 214170807 214170807 G A PROX1 Missense_Mutation p.R310Q 0.20 tolerated(0.27) benign(0.028) TCGA-AA-A00N-01 1 214794140 214794140 G A CENPF Missense_Mutation p.R239K 0.28 probably_damaging(0.987) TCGA-AA-A00N-01 1 214819034 214819034 G A CENPF Missense_Mutation p.E2041K 0.20 possibly_damaging(0.572) TCGA-AA-A00N-01 1 214820720 214820720 G A CENPF Missense_Mutation p.D2603N 0.23 benign(0.08) TCGA-AA-A00N-01 1 215759845 215759845 G T KCTD3 Nonsense_Mutation p.E212* 0.18 TCGA-AA-A00N-01 1 215901723 215901723 G A USH2A Silent p.R3905R 0.28 TCGA-AA-A00N-01 1 216040485 216040485 G A USH2A Silent p.F2903F 0.09 TCGA-AA-A00N-01 1 216138672 216138672 G T USH2A Missense_Mutation p.F2369L 0.17 benign(0.188) TCGA-AA-A00N-01 1 217947848 217947848 T G SPATA17 Missense_Mutation p.I231S 0.14 tolerated(0.91) benign(0.004) TCGA-AA-A00N-01 1 218578617 218578617 C A TGFB2 Silent p.V179V 0.18 TCGA-AA-A00N-01 1 220170515 220170515 A C EPRS Missense_Mutation p.L784R 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 1 220326745 220326745 A C RAB3GAP2 Missense_Mutation p.L1217V 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 220356176 220356176 C T RAB3GAP2 Missense_Mutation p.R699Q 0.07 tolerated(0.4) benign(0.014) TCGA-AA-A00N-01 1 220383752 220383752 C T RAB3GAP2 Missense_Mutation p.R197Q 0.23 deleterious(0.01) probably_damaging(0.927) TCGA-AA-A00N-01 1 220440480 220440480 C A RAB3GAP2 Intron 0.26 TCGA-AA-A00N-01 1 22056265 22056265 C T USP48 Missense_Mutation p.R411Q 0.25 deleterious(0.04) benign(0.33) TCGA-AA-A00N-01 1 22084255 22084255 C T USP48 Silent p.P52P 0.24 TCGA-AA-A00N-01 1 220960449 220960449 G A MARC1 Missense_Mutation p.V55M 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 1 221053610 221053610 G A HLX Silent p.Q137Q 0.40 TCGA-AA-A00N-01 1 221054616 221054616 G A HLX Missense_Mutation p.A225T 0.15 tolerated(0.16) benign(0.312) TCGA-AA-A00N-01 1 222705355 222705355 A G HHIPL2 Missense_Mutation p.I559T 0.24 deleterious(0.05) benign(0.202) TCGA-AA-A00N-01 1 222801630 222801630 G T MIA3 Missense_Mutation p.Q356H 0.20 deleterious(0.02) possibly_damaging(0.541) TCGA-AA-A00N-01 1 223116506 223116506 C T DISP1 Missense_Mutation p.S114L 0.24 tolerated(0.12) benign(0.024) TCGA-AA-A00N-01 1 223438124 223438124 A G SUSD4 Missense_Mutation p.V191A 0.25 tolerated(0.26) benign(0.032) TCGA-AA-A00N-01 1 223465897 223465897 C T SUSD4 Missense_Mutation p.R82Q 0.07 tolerated(0.37) benign(0.017) TCGA-AA-A00N-01 1 223813575 223813575 C T CAPN8 Missense_Mutation p.E249K 0.27 benign(0.285) TCGA-AA-A00N-01 1 22447975 22447975 G A WNT4 Silent p.C136C 0.22 TCGA-AA-A00N-01 1 224566677 224566677 A C CNIH4 3'UTR 0.17 TCGA-AA-A00N-01 1 224612267 224612267 T C WDR26 Silent p.E239E 0.12 TCGA-AA-A00N-01 1 225152254 225152254 G A DNAH14 Silent p.P147P 0.15 TCGA-AA-A00N-01 1 225380527 225380527 C T DNAH14 Nonsense_Mutation p.R1006* 0.15 TCGA-AA-A00N-01 1 225511929 225511929 C T DNAH14 Silent p.F2421F 0.27 TCGA-AA-A00N-01 1 225521069 225521069 C T DNAH14 Missense_Mutation p.A3221V 0.27 probably_damaging(0.998) TCGA-AA-A00N-01 1 225548421 225548421 G A DNAH14 Missense_Mutation p.E3846K 0.16 probably_damaging(0.998) TCGA-AA-A00N-01 1 225552562 225552562 C A DNAH14 Missense_Mutation p.S3926Y 0.05 possibly_damaging(0.742) TCGA-AA-A00N-01 1 225607070 225607070 C A LBR Nonsense_Mutation p.E179* 0.21 TCGA-AA-A00N-01 1 226353615 226353615 T G ACBD3 Missense_Mutation p.N125H 0.20 deleterious(0) possibly_damaging(0.904) TCGA-AA-A00N-01 1 227170455 227170455 G A ADCK3 Silent p.K310K 0.21 TCGA-AA-A00N-01 1 227504741 227504741 C T CDC42BPA Missense_Mutation p.R48K 0.21 tolerated(0.14) benign(0.018) TCGA-AA-A00N-01 1 227842674 227842674 A C ZNF678 Missense_Mutation p.E241D 0.30 tolerated(0.11) benign(0.206) TCGA-AA-A00N-01 1 228109531 228109531 G A WNT9A Silent p.G262G 0.18 TCGA-AA-A00N-01 1 228109617 228109617 C T WNT9A Missense_Mutation p.A234T 0.28 deleterious(0.02) benign(0.363) TCGA-AA-A00N-01 1 228112000 228112000 C T WNT9A Missense_Mutation p.D152N 0.15 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 22838609 22838609 G A ZBTB40 Missense_Mutation p.E815K 0.14 tolerated(0.07) benign(0.003) TCGA-AA-A00N-01 1 228403423 228403423 G A OBSCN Missense_Mutation p.R663H 0.10 possibly_damaging(0.849) TCGA-AA-A00N-01 1 228404721 228404721 G A OBSCN Silent p.A795A 0.19 TCGA-AA-A00N-01 1 228437675 228437675 C T OBSCN Missense_Mutation p.A1440V 0.35 benign(0.014) TCGA-AA-A00N-01 1 228459795 228459795 G A OBSCN Silent p.S1953S 0.22 TCGA-AA-A00N-01 1 228462306 228462306 G A OBSCN Missense_Mutation p.S2281N 0.14 benign(0.018) TCGA-AA-A00N-01 1 228464947 228464947 C T OBSCN Silent p.F2604F 0.20 TCGA-AA-A00N-01 1 228494710 228494710 G A OBSCN Missense_Mutation p.R4969H 0.27 probably_damaging(0.932) TCGA-AA-A00N-01 1 22852768 22852768 C T ZBTB40 Missense_Mutation p.S1200L 0.31 deleterious(0) benign(0.011) TCGA-AA-A00N-01 1 228594265 228594265 C T TRIM11 5'UTR 0.26 TCGA-AA-A00N-01 1 228645845 228645845 C T HIST3H2BB Silent p.S5S 0.10 TCGA-AA-A00N-01 1 229567022 229567022 C T ACTA1 3'UTR 0.45 TCGA-AA-A00N-01 1 229635471 229635471 G A NUP133 Missense_Mutation p.S203L 0.21 tolerated(1) benign(0) TCGA-AA-A00N-01 1 229763421 229763421 G A URB2 Missense_Mutation p.S14N 0.20 tolerated(0.1) probably_damaging(0.994) TCGA-AA-A00N-01 1 229771283 229771283 A G URB2 Missense_Mutation p.Y308C 0.08 deleterious(0) probably_damaging(0.921) TCGA-AA-A00N-01 1 229772709 229772709 G A URB2 Silent p.E783E 0.06 TCGA-AA-A00N-01 1 230386270 230386270 G A GALNT2 Missense_Mutation p.D325N 0.05 deleterious(0.01) benign(0.408) TCGA-AA-A00N-01 1 230415167 230415167 C T GALNT2 Missense_Mutation p.S560L 0.06 deleterious(0) possibly_damaging(0.666) TCGA-AA-A00N-01 1 230503883 230503883 G A PGBD5 Intron 0.20 TCGA-AA-A00N-01 1 230513365 230513365 C A PGBD5 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0.019) TCGA-AA-A00N-01 1 231061388 231061388 A C TTC13 Missense_Mutation p.V488G 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 231076283 231076283 C T TTC13 Missense_Mutation p.R231Q 0.19 tolerated(0.23) probably_damaging(0.998) TCGA-AA-A00N-01 1 231413315 231413315 C T GNPAT 3'UTR 0.31 TCGA-AA-A00N-01 1 231472914 231472914 T C EXOC8 Missense_Mutation p.D193G 0.12 deleterious(0.01) possibly_damaging(0.628) TCGA-AA-A00N-01 1 231487264 231487264 G A SPRTN Missense_Mutation p.G222D 0.35 tolerated(0.06) possibly_damaging(0.717) TCGA-AA-A00N-01 1 232596815 232596815 G A SIPA1L2 Silent p.V971V 0.32 TCGA-AA-A00N-01 1 232941958 232941958 G A MAP10 Missense_Mutation p.E397K 0.17 tolerated(0.63) benign(0.008) TCGA-AA-A00N-01 1 232942596 232942596 G T MAP10 Missense_Mutation p.K609N 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A00N-01 1 232945449 232945449 G T MAP10 3'UTR 0.24 TCGA-AA-A00N-01 1 233160902 233160902 T C PCNXL2 Missense_Mutation p.Y1532C 0.15 deleterious(0) benign(0.297) TCGA-AA-A00N-01 1 233190146 233190146 G T PCNXL2 Missense_Mutation p.L1407I 0.09 deleterious(0) probably_damaging(0.973) TCGA-AA-A00N-01 1 233397867 233397867 C T PCNXL2 Missense_Mutation p.R135Q 0.21 tolerated(0.31) benign(0.003) TCGA-AA-A00N-01 1 233464514 233464514 G A MLK4 Missense_Mutation p.G247D 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A00N-01 1 233464568 233464568 A G MLK4 Missense_Mutation p.K265R 0.23 deleterious(0) probably_damaging(0.974) TCGA-AA-A00N-01 1 23417865 23417865 C T LUZP1 Missense_Mutation p.E964K 0.05 deleterious(0) possibly_damaging(0.638) TCGA-AA-A00N-01 1 23521162 23521162 C T HTR1D 5'UTR 0.33 TCGA-AA-A00N-01 1 235345171 235345171 A C ARID4B Missense_Mutation p.N1021K 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-A00N-01 1 235507031 235507031 T G GGPS1 3'UTR 0.20 TCGA-AA-A00N-01 1 235507530 235507530 T G GGPS1 3'UTR 0.22 TCGA-AA-A00N-01 1 235621958 235621958 G A B3GALNT2 Silent p.V326V 0.15 TCGA-AA-A00N-01 1 235969412 235969412 C A LYST Missense_Mutation p.E1008D 0.17 tolerated_low_confidence(0.33) benign(0.068) TCGA-AA-A00N-01 1 235972015 235972015 A G LYST Silent p.F701F 0.18 TCGA-AA-A00N-01 1 236144974 236144974 C T NID1 Missense_Mutation p.R1055H 0.20 deleterious(0.01) benign(0.441) TCGA-AA-A00N-01 1 236645716 236645716 T C EDARADD Missense_Mutation p.W139R 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 236702220 236702220 G A LGALS8 Missense_Mutation p.R59Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 1 236735752 236735752 A G HEATR1 Silent p.S1222S 0.25 TCGA-AA-A00N-01 1 236918326 236918326 C T ACTN2 Missense_Mutation p.A661V 0.22 tolerated(0.24) benign(0.225) TCGA-AA-A00N-01 1 236920872 236920872 G A ACTN2 Silent p.A747A 0.32 TCGA-AA-A00N-01 1 236925877 236925877 C T ACTN2 Silent p.Y881Y 0.18 TCGA-AA-A00N-01 1 236925911 236925911 G A ACTN2 Missense_Mutation p.D893N 0.08 deleterious(0.04) benign(0.151) TCGA-AA-A00N-01 1 237711856 237711856 G A RYR2 Missense_Mutation p.R1011Q 0.20 probably_damaging(0.981) TCGA-AA-A00N-01 1 237806638 237806638 C T RYR2 Silent p.A2411A 0.30 TCGA-AA-A00N-01 1 237823343 237823343 T G RYR2 Nonsense_Mutation p.L2756* 0.22 TCGA-AA-A00N-01 1 237865313 237865313 A G RYR2 Missense_Mutation p.T3135A 0.21 benign(0.001) TCGA-AA-A00N-01 1 237949284 237949284 G T RYR2 Nonsense_Mutation p.E4426* 0.20 TCGA-AA-A00N-01 1 237954797 237954797 C A RYR2 Missense_Mutation p.F4515L 0.16 possibly_damaging(0.787) TCGA-AA-A00N-01 1 237982395 237982395 C T RYR2 Silent p.I4831I 0.21 TCGA-AA-A00N-01 1 240071378 240071378 C A CHRM3 Nonsense_Mutation p.Y209* 0.19 TCGA-AA-A00N-01 1 240341335 240341335 G A FMN2 Missense_Mutation p.D633N 0.25 unknown(0) TCGA-AA-A00N-01 1 240637608 240637608 G T FMN2 3'UTR 0.16 TCGA-AA-A00N-01 1 240975222 240975222 A C RGS7 Missense_Mutation p.L360V 0.27 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 1 241729877 241729877 G T KMO Missense_Mutation p.Q258H 0.25 tolerated(0.22) benign(0.033) TCGA-AA-A00N-01 1 241756521 241756521 G T OPN3 3'UTR 0.11 TCGA-AA-A00N-01 1 241767831 241767831 G A OPN3 Missense_Mutation p.R142C 0.26 deleterious(0) benign(0.142) TCGA-AA-A00N-01 1 241834464 241834464 G A WDR64 Missense_Mutation p.R122Q 0.19 tolerated(0.36) benign(0.22) TCGA-AA-A00N-01 1 241842898 241842898 G A WDR64 Splice_Site p.X198_splice 0.25 TCGA-AA-A00N-01 1 243303262 243303262 G A CEP170 Missense_Mutation p.R1403W 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 243363825 243363825 G T CEP170 Missense_Mutation p.A164D 0.14 deleterious(0.03) benign(0.027) TCGA-AA-A00N-01 1 24383676 24383676 G T MYOM3 3'UTR 0.33 TCGA-AA-A00N-01 1 24408383 24408383 G A MYOM3 Intron 0.20 TCGA-AA-A00N-01 1 244214732 244214732 T G ZBTB18 5'UTR 0.23 TCGA-AA-A00N-01 1 244541909 244541909 G A C1orf100 Missense_Mutation p.R98Q 0.18 tolerated(1) benign(0.001) TCGA-AA-A00N-01 1 244574619 244574619 G A ADSS Nonsense_Mutation p.R430* 0.24 TCGA-AA-A00N-01 1 245245421 245245421 G A EFCAB2 Missense_Mutation p.E74K 0.10 deleterious(0.04) benign(0.261) TCGA-AA-A00N-01 1 245250550 245250550 A C EFCAB2 Missense_Mutation p.E126A 0.07 deleterious(0) probably_damaging(0.967) TCGA-AA-A00N-01 1 245250673 245250673 G T EFCAB2 3'UTR 0.25 TCGA-AA-A00N-01 1 245704112 245704112 C T KIF26B Missense_Mutation p.R404W 0.20 deleterious(0.02) unknown(0) TCGA-AA-A00N-01 1 245772616 245772616 G A KIF26B Missense_Mutation p.G567D 0.28 deleterious(0) unknown(0) TCGA-AA-A00N-01 1 245775190 245775190 C A KIF26B Missense_Mutation p.D670E 0.18 tolerated(0.22) unknown(0) TCGA-AA-A00N-01 1 245862260 245862260 G A KIF26B Silent p.A2033A 0.32 TCGA-AA-A00N-01 1 246493832 246493832 C A SMYD3 Missense_Mutation p.G115V 0.18 tolerated(0.16) benign(0.082) TCGA-AA-A00N-01 1 247200863 247200863 C T ZNF670 Missense_Mutation p.R353Q 0.41 tolerated(0.81) possibly_damaging(0.454) TCGA-AA-A00N-01 1 247201653 247201653 A G ZNF670 Silent p.L90L 0.25 TCGA-AA-A00N-01 1 247320008 247320008 G A ZNF124 Missense_Mutation p.R244C 0.10 deleterious(0.01) probably_damaging(0.947) TCGA-AA-A00N-01 1 247588026 247588026 G A NLRP3 Silent p.E427E 0.24 TCGA-AA-A00N-01 1 247588582 247588582 G T NLRP3 Nonsense_Mutation p.E613* 0.18 TCGA-AA-A00N-01 1 247614508 247614508 C T OR2B11 Silent p.A259A 0.28 TCGA-AA-A00N-01 1 248129403 248129403 C A OR2AK2 Missense_Mutation p.S257Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 1 248224684 248224684 A C OR2L3 Missense_Mutation p.K234T 0.22 tolerated(0.07) probably_damaging(0.93) TCGA-AA-A00N-01 1 248224777 248224777 G A OR2L3 Missense_Mutation p.R265Q 0.20 tolerated(0.07) benign(0.056) TCGA-AA-A00N-01 1 248263920 248263920 G T OR2L13 3'UTR 0.14 TCGA-AA-A00N-01 1 248343371 248343371 C A OR2M2 Missense_Mutation p.F28L 0.10 deleterious(0.01) benign(0.32) TCGA-AA-A00N-01 1 248344185 248344185 G A OR2M2 Missense_Mutation p.A300T 0.17 deleterious(0) possibly_damaging(0.881) TCGA-AA-A00N-01 1 248512586 248512586 C T OR14C36 Silent p.N170N 0.28 TCGA-AA-A00N-01 1 248616492 248616492 C T OR2T2 Missense_Mutation p.R132W 0.10 deleterious(0) possibly_damaging(0.72) TCGA-AA-A00N-01 1 248789924 248789924 C T OR2T11 Missense_Mutation p.R169Q 0.25 tolerated(0.11) benign(0.303) TCGA-AA-A00N-01 1 24932345 24932345 C T NCMAP 3'UTR 0.27 TCGA-AA-A00N-01 1 25140618 25140618 G A CLIC4 Silent p.G72G 0.28 TCGA-AA-A00N-01 1 2530215 2530215 A C MMEL1 Silent p.T352T 0.24 TCGA-AA-A00N-01 1 2540843 2540843 G A MMEL1 Missense_Mutation p.S157L 0.29 deleterious(0.02) benign(0.311) TCGA-AA-A00N-01 1 26090397 26090397 C T MAN1C1 Silent p.I360I 0.19 TCGA-AA-A00N-01 1 26900594 26900594 G A RPS6KA1 Missense_Mutation p.A713T 0.35 deleterious(0.01) possibly_damaging(0.864) TCGA-AA-A00N-01 1 27248280 27248280 G A NUDC 5'UTR 0.18 TCGA-AA-A00N-01 1 27480569 27480569 C T SLC9A1 Missense_Mutation p.R86H 0.16 deleterious(0.04) benign(0.004) TCGA-AA-A00N-01 1 28128225 28128225 G T STX12 Missense_Mutation p.D109Y 0.23 deleterious(0) probably_damaging(0.985) TCGA-AA-A00N-01 1 28157473 28157473 T G PPP1R8 Intron 0.23 TCGA-AA-A00N-01 1 29037130 29037130 G T GMEB1 Nonsense_Mutation p.E333* 0.19 TCGA-AA-A00N-01 1 29359622 29359622 T C EPB41 Silent p.D410D 0.17 TCGA-AA-A00N-01 1 29379626 29379626 C T EPB41 Silent p.V549V 0.25 TCGA-AA-A00N-01 1 2938913 2938913 C A ACTRT2 Nonsense_Mutation p.C221* 0.16 TCGA-AA-A00N-01 1 29602052 29602052 C T PTPRU Missense_Mutation p.R413C 0.17 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 1 29652132 29652132 G A PTPRU Missense_Mutation p.D1434N 0.26 deleterious(0) probably_damaging(0.969) TCGA-AA-A00N-01 1 31349997 31349997 G A SDC3 Missense_Mutation p.S91L 0.05 tolerated(0.08) probably_damaging(0.996) TCGA-AA-A00N-01 1 32126682 32126682 G A COL16A1 Silent p.G1270G 0.20 TCGA-AA-A00N-01 1 32163647 32163647 G T COL16A1 Missense_Mutation p.L173M 0.27 unknown(0) TCGA-AA-A00N-01 1 32636370 32636370 G A KPNA6 Missense_Mutation p.D496N 0.15 tolerated(0.49) benign(0.059) TCGA-AA-A00N-01 1 32667521 32667521 G A CCDC28B 5'UTR 0.12 TCGA-AA-A00N-01 1 33237408 33237408 G A KIAA1522 Silent p.A876A 0.21 TCGA-AA-A00N-01 1 33329732 33329732 C T FNDC5 3'UTR 0.26 TCGA-AA-A00N-01 1 3389648 3389648 C T ARHGEF16 Silent p.F343F 0.22 TCGA-AA-A00N-01 1 34090126 34090126 C T CSMD2 Missense_Mutation p.G1833D 0.19 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 1 34090742 34090742 G A CSMD2 Silent p.S1763S 0.20 TCGA-AA-A00N-01 1 34128632 34128632 C T CSMD2 Silent p.G1331G 0.26 TCGA-AA-A00N-01 1 34254275 34254275 G A CSMD2 Missense_Mutation p.T490I 0.17 deleterious(0.02) possibly_damaging(0.61) TCGA-AA-A00N-01 1 34285335 34285335 C T CSMD2 Missense_Mutation p.D395N 0.30 tolerated(0.07) probably_damaging(0.954) TCGA-AA-A00N-01 1 35228221 35228221 C T GJB4 3'UTR 0.24 TCGA-AA-A00N-01 1 35321413 35321413 G A SMIM12 Missense_Mutation p.R56C 0.06 tolerated(0.07) benign(0.071) TCGA-AA-A00N-01 1 35453244 35453244 A C ZMYM6 Missense_Mutation p.F1147V 0.19 deleterious(0.04) benign(0.146) TCGA-AA-A00N-01 1 3548895 3548895 G A WRAP73 Silent p.I310I 0.22 TCGA-AA-A00N-01 1 35652836 35652836 C T SFPQ Missense_Mutation p.R611Q 0.19 deleterious(0) possibly_damaging(0.602) TCGA-AA-A00N-01 1 35847150 35847150 C T ZMYM4 Nonsense_Mutation p.R454* 0.25 TCGA-AA-A00N-01 1 35854672 35854672 T G ZMYM4 Missense_Mutation p.L809V 0.24 deleterious(0) probably_damaging(0.97) TCGA-AA-A00N-01 1 36026197 36026197 C T NCDN Missense_Mutation p.R149C 0.31 deleterious(0.03) possibly_damaging(0.787) TCGA-AA-A00N-01 1 36385189 36385189 G A AGO1 Missense_Mutation p.R852H 0.21 tolerated(0.25) benign(0.002) TCGA-AA-A00N-01 1 36640564 36640564 C T MAP7D1 Missense_Mutation p.R269W 0.12 probably_damaging(1) TCGA-AA-A00N-01 1 36644030 36644030 C A MAP7D1 Silent p.V573V 0.11 TCGA-AA-A00N-01 1 36752016 36752016 G A THRAP3 Missense_Mutation p.R62K 0.23 tolerated(0.28) unknown(0) TCGA-AA-A00N-01 1 3683919 3683919 G T CCDC27 Missense_Mutation p.K551N 0.22 deleterious(0) probably_damaging(0.941) TCGA-AA-A00N-01 1 36909626 36909626 T C OSCP1 Intron 0.17 TCGA-AA-A00N-01 1 36938156 36938156 G A CSF3R Missense_Mutation p.R269C 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 3697550 3697550 C A LRRC47 3'UTR 0.22 TCGA-AA-A00N-01 1 37346268 37346268 G A GRIK3 Missense_Mutation p.R173W 0.20 deleterious(0) possibly_damaging(0.749) TCGA-AA-A00N-01 1 37945948 37945948 T G ZC3H12A Missense_Mutation p.F167L 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 37962160 37962160 T G MEAF6 Intron 0.22 TCGA-AA-A00N-01 1 3800179 3800179 G T DFFB Missense_Mutation p.E297D 0.23 tolerated(0.33) benign(0.002) TCGA-AA-A00N-01 1 38027278 38027278 C T DNALI1 Missense_Mutation p.A195V 0.20 deleterious(0) possibly_damaging(0.726) TCGA-AA-A00N-01 1 3807148 3807148 G A C1orf174 Silent p.N201N 0.19 TCGA-AA-A00N-01 1 38172657 38172657 G A CDCA8 Missense_Mutation p.R240Q 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-AA-A00N-01 1 38489248 38489248 A C UTP11L Missense_Mutation p.E237A 0.13 tolerated(0.67) benign(0.036) TCGA-AA-A00N-01 1 39748087 39748087 C T MACF1 Intron 0.11 TCGA-AA-A00N-01 1 39798902 39798902 G A MACF1 Intron 0.13 TCGA-AA-A00N-01 1 39919469 39919469 T C MACF1 Missense_Mutation p.C4886R 0.25 probably_damaging(0.986) TCGA-AA-A00N-01 1 39987229 39987229 C T BMP8A Silent p.L285L 0.21 TCGA-AA-A00N-01 1 40026676 40026676 T C PABPC4 3'UTR 0.17 TCGA-AA-A00N-01 1 40688257 40688257 C T RLF Silent p.V274V 0.30 TCGA-AA-A00N-01 1 40702225 40702225 G T RLF Missense_Mutation p.K617N 0.16 tolerated(0.07) benign(0.358) TCGA-AA-A00N-01 1 40717052 40717052 G A TMCO2 Missense_Mutation p.R112Q 0.16 tolerated_low_confidence(0.57) benign(0) TCGA-AA-A00N-01 1 40734136 40734136 G A ZMPSTE24 Missense_Mutation p.A135T 0.18 tolerated(1) benign(0.001) TCGA-AA-A00N-01 1 40928144 40928144 C T ZFP69B Missense_Mutation p.S163L 0.24 tolerated(0.08) probably_damaging(0.992) TCGA-AA-A00N-01 1 40929140 40929140 G T ZFP69B Missense_Mutation p.R495I 0.20 deleterious(0) probably_damaging(0.965) TCGA-AA-A00N-01 1 40961559 40961559 A G ZFP69 Missense_Mutation p.N470S 0.21 tolerated(0.68) benign(0.016) TCGA-AA-A00N-01 1 42050152 42050152 G A HIVEP3 Missense_Mutation p.S106L 0.05 possibly_damaging(0.536) TCGA-AA-A00N-01 1 42628639 42628639 C T GUCA2A Missense_Mutation p.E96K 0.29 tolerated(0.52) benign(0.235) TCGA-AA-A00N-01 1 42645358 42645358 C T FOXJ3 3'UTR 0.10 TCGA-AA-A00N-01 1 43055039 43055039 C T CCDC30 Missense_Mutation p.T423I 0.20 tolerated(0.42) benign(0.007) TCGA-AA-A00N-01 1 43131686 43131686 C A PPIH Missense_Mutation p.F124L 0.16 deleterious(0.01) benign(0.395) TCGA-AA-A00N-01 1 43149100 43149100 T G YBX1 Missense_Mutation p.W65G 0.29 deleterious(0) benign(0.036) TCGA-AA-A00N-01 1 43166649 43166649 C T YBX1 Missense_Mutation p.S313L 0.23 tolerated(0.19) benign(0) TCGA-AA-A00N-01 1 43282187 43282187 G T CCDC23 Missense_Mutation p.T10N 0.16 tolerated(0.11) benign(0) TCGA-AA-A00N-01 1 43902867 43902867 G A SZT2 Silent p.A1963A 0.24 TCGA-AA-A00N-01 1 44132643 44132643 G A KDM4A Missense_Mutation p.E266K 0.17 deleterious(0.03) possibly_damaging(0.84) TCGA-AA-A00N-01 1 44386580 44386580 C T ST3GAL3 Missense_Mutation p.R409C 0.14 tolerated(0.16) probably_damaging(0.921) TCGA-AA-A00N-01 1 44415217 44415217 A G IPO13 Silent p.V71V 0.23 TCGA-AA-A00N-01 1 44584563 44584563 G T KLF17 5'UTR 0.20 TCGA-AA-A00N-01 1 45241776 45241776 G C RPS8 Silent p.R25R 0.27 TCGA-AA-A00N-01 1 45294720 45294720 G A PTCH2 Silent p.I466I 0.28 TCGA-AA-A00N-01 1 46032263 46032263 C T AKR1A1 Missense_Mutation p.A36V 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A00N-01 1 46035721 46035721 A C AKR1A1 3'UTR 0.13 TCGA-AA-A00N-01 1 46088259 46088259 G A CCDC17 Missense_Mutation p.A274V 0.06 deleterious(0.01) probably_damaging(0.943) TCGA-AA-A00N-01 1 46093845 46093845 A C GPBP1L1 3'UTR 0.18 TCGA-AA-A00N-01 1 46496683 46496683 C T MAST2 Missense_Mutation p.R905W 0.22 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-AA-A00N-01 1 47013351 47013351 G A KNCN 3'UTR 0.22 TCGA-AA-A00N-01 1 47027228 47027228 G T MKNK1 Silent p.L350L 0.16 TCGA-AA-A00N-01 1 47283819 47283819 G A CYP4B1 Missense_Mutation p.R430H 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-AA-A00N-01 1 47364570 47364570 C T CYP4Z2P RNA 0.15 TCGA-AA-A00N-01 1 47767909 47767909 C T STIL Missense_Mutation p.E88K 0.26 deleterious(0.03) possibly_damaging(0.771) TCGA-AA-A00N-01 1 47840643 47840643 G A CMPK1 Silent p.E178E 0.18 TCGA-AA-A00N-01 1 48708192 48708192 G A SLC5A9 Missense_Mutation p.E606K 0.09 tolerated(0.33) benign(0.001) TCGA-AA-A00N-01 1 48825413 48825413 G A SPATA6 Silent p.F313F 0.35 TCGA-AA-A00N-01 1 48918741 48918741 A G SPATA6 Silent p.F38F 0.26 TCGA-AA-A00N-01 1 49056587 49056587 T C AGBL4 Missense_Mutation p.N341S 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 1 49100216 49100216 A G AGBL4 Silent p.H300H 0.12 TCGA-AA-A00N-01 1 50572049 50572049 G T ELAVL4 Missense_Mutation p.R15I 0.10 tolerated_low_confidence(0.11) benign(0.001) TCGA-AA-A00N-01 1 51753908 51753908 C T TTC39A Missense_Mutation p.R556Q 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 52263977 52263977 C A NRD1 Nonsense_Mutation p.E918* 0.25 TCGA-AA-A00N-01 1 52551785 52551785 C A BTF3L4 Silent p.V124V 0.06 TCGA-AA-A00N-01 1 52891133 52891133 T C ZCCHC11 Silent p.A1586A 0.18 TCGA-AA-A00N-01 1 52954595 52954595 G A ZCCHC11 Missense_Mutation p.R501C 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 53320276 53320276 G A ZYG11A Missense_Mutation p.R77Q 0.21 tolerated(0.92) benign(0.013) TCGA-AA-A00N-01 1 53546513 53546513 C T PODN Silent p.F590F 0.20 TCGA-AA-A00N-01 1 53741402 53741402 C T LRP8 Missense_Mutation p.E303K 0.14 tolerated(0.06) possibly_damaging(0.713) TCGA-AA-A00N-01 1 54060274 54060274 A G GLIS1 Missense_Mutation p.V101A 0.27 deleterious(0) benign(0.119) TCGA-AA-A00N-01 1 54354646 54354646 A C YIPF1 5'UTR 0.26 TCGA-AA-A00N-01 1 54640384 54640384 C T CYB5RL Missense_Mutation p.A286T 0.24 tolerated(0.25) benign(0.06) TCGA-AA-A00N-01 1 55279532 55279532 G A C1orf177 Missense_Mutation p.E270K 0.12 deleterious(0.05) probably_damaging(0.946) TCGA-AA-A00N-01 1 55565483 55565483 G T USP24 Missense_Mutation p.F1777L 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 1 55590163 55590163 G A USP24 Nonsense_Mutation p.R1367* 0.15 TCGA-AA-A00N-01 1 55622702 55622702 G T USP24 Nonsense_Mutation p.Y455* 0.20 TCGA-AA-A00N-01 1 57140095 57140095 A C PRKAA2 Missense_Mutation p.I46L 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 1 57170075 57170075 G A PRKAA2 Missense_Mutation p.R407Q 0.19 tolerated(0.38) probably_damaging(0.998) TCGA-AA-A00N-01 1 57185941 57185941 C A C1orf168 Missense_Mutation p.G679V 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 57189301 57189301 C T C1orf168 Missense_Mutation p.R645K 0.08 tolerated(0.41) benign(0.084) TCGA-AA-A00N-01 1 59042259 59042259 G A TACSTD2 Silent p.F190F 0.10 TCGA-AA-A00N-01 1 6007252 6007252 C T NPHP4 Missense_Mutation p.R344H 0.25 tolerated(0.22) benign(0.03) TCGA-AA-A00N-01 1 61869896 61869896 T G NFIA Missense_Mutation p.F444C 0.24 deleterious(0) probably_damaging(0.951) TCGA-AA-A00N-01 1 62175038 62175038 C T TM2D1 Missense_Mutation p.E166K 0.21 tolerated(0.06) possibly_damaging(0.768) TCGA-AA-A00N-01 1 6246596 6246596 G A RPL22 3'UTR 0.43 TCGA-AA-A00N-01 1 62672805 62672805 G A L1TD1 Missense_Mutation p.E169K 0.19 tolerated(1) unknown(0) TCGA-AA-A00N-01 1 62676712 62676712 A G L1TD1 Missense_Mutation p.T756A 0.20 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 1 62954662 62954662 C A DOCK7 Missense_Mutation p.K1781N 0.20 deleterious(0) possibly_damaging(0.804) TCGA-AA-A00N-01 1 63100491 63100491 T G DOCK7 Missense_Mutation p.I330L 0.23 deleterious(0.01) benign(0.133) TCGA-AA-A00N-01 1 63284789 63284789 G T ATG4C Nonsense_Mutation p.E170* 0.21 TCGA-AA-A00N-01 1 63284947 63284947 G T ATG4C Missense_Mutation p.K222N 0.19 tolerated(0.1) benign(0.038) TCGA-AA-A00N-01 1 63991425 63991425 A G EFCAB7 Missense_Mutation p.Y61C 0.17 tolerated(0.4) benign(0.001) TCGA-AA-A00N-01 1 65099910 65099910 C T CACHD1 Nonsense_Mutation p.R274* 0.06 TCGA-AA-A00N-01 1 65107578 65107578 C A CACHD1 Missense_Mutation p.T310N 0.23 deleterious(0.01) benign(0.425) TCGA-AA-A00N-01 1 65119548 65119548 C T CACHD1 Missense_Mutation p.R499W 0.15 deleterious(0.01) probably_damaging(0.958) TCGA-AA-A00N-01 1 6521252 6521252 G A TNFRSF25 3'UTR 0.24 TCGA-AA-A00N-01 1 65309804 65309804 C T JAK1 Silent p.T782T 0.20 TCGA-AA-A00N-01 1 65730600 65730600 G T DNAJC6 Missense_Mutation p.D3Y 0.09 tolerated(0.07) benign(0.276) TCGA-AA-A00N-01 1 66085655 66085655 A C LEPR Missense_Mutation p.I814L 0.17 deleterious(0.01) benign(0.126) TCGA-AA-A00N-01 1 6638810 6638810 G A TAS1R1 Silent p.E564E 0.31 TCGA-AA-A00N-01 1 67194974 67194974 G T SGIP1 Missense_Mutation p.M590I 0.19 deleterious(0.02) benign(0.055) TCGA-AA-A00N-01 1 67241977 67241977 T G TCTEX1D1 Missense_Mutation p.F76C 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 1 68904889 68904889 G T RPE65 Silent p.S281S 0.24 TCGA-AA-A00N-01 1 70144128 70144128 C T LRRC7 Missense_Mutation p.R23C 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-AA-A00N-01 1 70504819 70504819 C T LRRC7 Silent p.I1066I 0.27 TCGA-AA-A00N-01 1 70541808 70541808 C T LRRC7 Missense_Mutation p.R1389C 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A00N-01 1 70587596 70587596 C T LRRC7 3'UTR 0.12 TCGA-AA-A00N-01 1 70781192 70781192 C T ANKRD13C Missense_Mutation p.R212Q 0.13 tolerated(0.13) benign(0.425) TCGA-AA-A00N-01 1 71532579 71532579 C T ZRANB2 Missense_Mutation p.R270Q 0.19 deleterious_low_confidence(0) unknown(0) TCGA-AA-A00N-01 1 74716449 74716449 A C FPGT-TNNI3K Missense_Mutation p.Y224S 0.23 deleterious(0.01) possibly_damaging(0.886) TCGA-AA-A00N-01 1 74716450 74716450 C A FPGT-TNNI3K Nonsense_Mutation p.Y224* 0.24 TCGA-AA-A00N-01 1 74808561 74808561 C A FPGT-TNNI3K Missense_Mutation p.H354N 0.21 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 1 74819697 74819697 G A FPGT-TNNI3K Missense_Mutation p.R468H 0.18 tolerated(0.18) probably_damaging(0.997) TCGA-AA-A00N-01 1 74835096 74835096 C T FPGT-TNNI3K Silent p.C612C 0.34 TCGA-AA-A00N-01 1 75086429 75086429 A G C1orf173 Missense_Mutation p.L330P 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 1 75097428 75097428 G A C1orf173 Missense_Mutation p.A263V 0.21 deleterious(0.05) possibly_damaging(0.891) TCGA-AA-A00N-01 1 76333226 76333226 A C MSH4 Missense_Mutation p.N420H 0.07 tolerated(0.43) benign(0.02) TCGA-AA-A00N-01 1 76378460 76378460 G A MSH4 Missense_Mutation p.R900Q 0.19 tolerated(0.14) possibly_damaging(0.556) TCGA-AA-A00N-01 1 76378512 76378512 G T MSH4 Missense_Mutation p.K917N 0.15 deleterious(0) possibly_damaging(0.774) TCGA-AA-A00N-01 1 76779647 76779647 G A ST6GALNAC3 Missense_Mutation p.R59Q 0.23 benign(0.013) TCGA-AA-A00N-01 1 76877855 76877855 C T ST6GALNAC3 Nonsense_Mutation p.R126* 0.26 TCGA-AA-A00N-01 1 7700552 7700552 C T CAMTA1 Silent p.T201T 0.18 TCGA-AA-A00N-01 1 77984384 77984384 T G AK5 Missense_Mutation p.I428S 0.12 tolerated(0.06) benign(0.061) TCGA-AA-A00N-01 1 78194070 78194070 C T USP33 Missense_Mutation p.E380K 0.17 deleterious(0.05) benign(0.228) TCGA-AA-A00N-01 1 78383682 78383682 T C NEXN Missense_Mutation p.V86A 0.21 tolerated(0.65) benign(0) TCGA-AA-A00N-01 1 78408392 78408392 A C NEXN Missense_Mutation p.T636P 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A00N-01 1 78478867 78478867 G A DNAJB4 Missense_Mutation p.R115Q 0.32 tolerated(0.59) benign(0.054) TCGA-AA-A00N-01 1 7848198 7848198 C A PER3 Missense_Mutation p.L162M 0.29 deleterious(0) possibly_damaging(0.86) TCGA-AA-A00N-01 1 79002310 79002310 A C PTGFR Missense_Mutation p.N340H 0.23 deleterious(0.03) benign(0.176) TCGA-AA-A00N-01 1 79106749 79106749 T C IFI44L Silent p.S364S 0.20 TCGA-AA-A00N-01 1 7993247 7993247 C T TNFRSF9 Silent p.K218K 0.06 TCGA-AA-A00N-01 1 8073398 8073398 C T ERRFI1 Missense_Mutation p.A421T 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-AA-A00N-01 1 82450967 82450967 G T LPHN2 Missense_Mutation p.D1129Y 0.18 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 1 84981996 84981996 G T SPATA1 RNA 0.13 TCGA-AA-A00N-01 1 85424213 85424213 T G MCOLN2 Missense_Mutation p.Q137P 0.10 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 1 85594403 85594403 T G WDR63 Missense_Mutation p.F777C 0.14 deleterious(0) probably_damaging(0.928) TCGA-AA-A00N-01 1 85624530 85624530 C T SYDE2 Missense_Mutation p.R1163Q 0.23 tolerated(0.52) benign(0.01) TCGA-AA-A00N-01 1 86173682 86173682 A T ZNHIT6 Missense_Mutation p.W96R 0.20 tolerated_low_confidence(0.06) benign(0.019) TCGA-AA-A00N-01 1 86952426 86952426 C T CLCA1 Missense_Mutation p.S391L 0.22 tolerated(0.3) benign(0.006) TCGA-AA-A00N-01 1 87025614 87025614 G T CLCA4 Splice_Site p.X54_splice 0.16 TCGA-AA-A00N-01 1 87033232 87033232 C T CLCA4 Silent p.I360I 0.16 TCGA-AA-A00N-01 1 87538852 87538852 T C HS2ST1 Silent p.D120D 0.21 TCGA-AA-A00N-01 1 879517 879517 C T SAMD11 Missense_Mutation p.S677F 0.35 deleterious_low_confidence(0) possibly_damaging(0.553) TCGA-AA-A00N-01 1 89414893 89414893 G T CCBL2 Missense_Mutation p.S341Y 0.21 deleterious(0.01) benign(0.321) TCGA-AA-A00N-01 1 89528859 89528859 C T GBP1 Missense_Mutation p.R20Q 0.30 tolerated(1) benign(0) TCGA-AA-A00N-01 1 89575548 89575548 G A GBP2 Missense_Mutation p.R491C 0.24 tolerated(0.06) benign(0.131) TCGA-AA-A00N-01 1 89847458 89847458 T C GBP6 Silent p.C359C 0.16 TCGA-AA-A00N-01 1 89847469 89847469 C T GBP6 Missense_Mutation p.A363V 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 1 89849690 89849690 G A GBP6 Missense_Mutation p.E503K 0.18 tolerated(0.49) benign(0.219) TCGA-AA-A00N-01 1 89885789 89885789 G A GBP1P1 RNA 0.08 TCGA-AA-A00N-01 1 89890036 89890036 T G GBP1P1 Intron 0.18 TCGA-AA-A00N-01 1 89890038 89890038 C A GBP1P1 Intron 0.15 TCGA-AA-A00N-01 1 89890052 89890052 T G GBP1P1 Intron 0.08 TCGA-AA-A00N-01 1 90049517 90049517 C A LRRC8B Silent p.V436V 0.18 TCGA-AA-A00N-01 1 90487882 90487882 C T ZNF326 Missense_Mutation p.A460V 0.17 tolerated(0.23) probably_damaging(0.984) TCGA-AA-A00N-01 1 9107749 9107749 G A SLC2A5 Missense_Mutation p.A113V 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-AA-A00N-01 1 92446934 92446934 A C BRDT Silent p.T620T 0.19 TCGA-AA-A00N-01 1 92518155 92518155 A G EPHX4 Missense_Mutation p.Y266C 0.23 deleterious(0) probably_damaging(0.965) TCGA-AA-A00N-01 1 92647294 92647294 C T KIAA1107 Nonsense_Mutation p.R914* 0.27 TCGA-AA-A00N-01 1 92852664 92852664 T G RPAP2 3'UTR 0.15 TCGA-AA-A00N-01 1 93101831 93101831 T G EVI5 Missense_Mutation p.Q469H 0.23 deleterious(0.04) benign(0.039) TCGA-AA-A00N-01 1 93101869 93101869 C T EVI5 Missense_Mutation p.E457K 0.21 deleterious(0) probably_damaging(0.91) TCGA-AA-A00N-01 1 93142745 93142745 C T EVI5 Silent p.T420T 0.21 TCGA-AA-A00N-01 1 93594885 93594885 G A MTF2 Missense_Mutation p.R347Q 0.21 deleterious(0) possibly_damaging(0.588) TCGA-AA-A00N-01 1 93965033 93965033 C T FNBP1L Silent p.F11F 0.14 TCGA-AA-A00N-01 1 94370138 94370138 C T GCLM Missense_Mutation p.D45N 0.24 deleterious(0) possibly_damaging(0.649) TCGA-AA-A00N-01 1 94471003 94471003 G A ABCA4 Silent p.I2047I 0.33 TCGA-AA-A00N-01 1 94486801 94486801 A C ABCA4 Missense_Mutation p.I1671M 0.07 tolerated(0.09) probably_damaging(0.936) TCGA-AA-A00N-01 1 94946077 94946077 C T ABCD3 Nonsense_Mutation p.R248* 0.07 TCGA-AA-A00N-01 1 94955291 94955291 C T ABCD3 Missense_Mutation p.R390W 0.18 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 1 95367749 95367749 G A CNN3 Silent p.F104F 0.26 TCGA-AA-A00N-01 1 95710080 95710080 G A RWDD3 Silent p.T133T 0.22 TCGA-AA-A00N-01 1 99358629 99358629 C A LPPR5 Nonstop_Mutation p.*322Lext*36 0.16 TCGA-AA-A00N-01 20 10626067 10626067 C T JAG1 Missense_Mutation p.D684N 0.19 tolerated(0.06) probably_damaging(0.941) TCGA-AA-A00N-01 20 11899074 11899074 G A BTBD3 Missense_Mutation p.E51K 0.26 deleterious_low_confidence(0.03) benign(0.197) TCGA-AA-A00N-01 20 13107243 13107243 C T SPTLC3 Silent p.L386L 0.07 TCGA-AA-A00N-01 20 13260403 13260403 C A ISM1 Silent p.S167S 0.20 TCGA-AA-A00N-01 20 13279767 13279767 C T ISM1 Silent p.S352S 0.21 TCGA-AA-A00N-01 20 13698019 13698019 A G ESF1 Missense_Mutation p.F753S 0.19 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 20 13899763 13899763 T G SEL1L2 Missense_Mutation p.K97T 0.21 tolerated(0.23) benign(0.021) TCGA-AA-A00N-01 20 13912368 13912368 C A SEL1L2 Missense_Mutation p.R55I 0.15 deleterious(0.02) possibly_damaging(0.468) TCGA-AA-A00N-01 20 14306609 14306609 C T FLRT3 Missense_Mutation p.R515Q 0.07 tolerated(0.43) benign(0.012) TCGA-AA-A00N-01 20 14308171 14308171 C A FLRT3 5'UTR 0.22 TCGA-AA-A00N-01 20 1460374 1460374 G A SIRPB2 Missense_Mutation p.S141L 0.21 tolerated(0.66) benign(0.001) TCGA-AA-A00N-01 20 1532361 1532361 G A SIRPD Missense_Mutation p.R133W 0.33 deleterious(0) possibly_damaging(0.867) TCGA-AA-A00N-01 20 1629804 1629804 G A SIRPG Silent p.S108S 0.21 TCGA-AA-A00N-01 20 16348206 16348206 A G KIF16B Missense_Mutation p.V1255A 0.14 tolerated_low_confidence(0.08) benign(0.046) TCGA-AA-A00N-01 20 16493483 16493483 C T KIF16B Missense_Mutation p.R145Q 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A00N-01 20 16731831 16731831 A C OTOR 3'UTR 0.29 TCGA-AA-A00N-01 20 17479481 17479481 C T BFSP1 Missense_Mutation p.E314K 0.10 deleterious(0.04) benign(0.259) TCGA-AA-A00N-01 20 17594781 17594781 G A RRBP1 3'UTR 0.15 TCGA-AA-A00N-01 20 18142572 18142572 G A CSRP2BP Missense_Mutation p.R264Q 0.18 deleterious(0.05) possibly_damaging(0.603) TCGA-AA-A00N-01 20 18165371 18165371 C A CSRP2BP Missense_Mutation p.L704M 0.15 deleterious(0.01) possibly_damaging(0.9) TCGA-AA-A00N-01 20 18295739 18295739 G A ZNF133 Missense_Mutation p.D81N 0.15 tolerated(0.16) benign(0.05) TCGA-AA-A00N-01 20 18576815 18576815 G A DTD1 Silent p.E100E 0.26 TCGA-AA-A00N-01 20 18790669 18790669 G T C20orf78 Silent p.L69L 0.13 TCGA-AA-A00N-01 20 18790729 18790729 C T C20orf78 Missense_Mutation p.M49I 0.22 tolerated_low_confidence(0.09) benign(0.045) TCGA-AA-A00N-01 20 19560688 19560688 C A SLC24A3 Missense_Mutation p.F131L 0.05 deleterious(0.02) possibly_damaging(0.803) TCGA-AA-A00N-01 20 19915793 19915793 G A RIN2 Silent p.V85V 0.18 TCGA-AA-A00N-01 20 20056250 20056250 G A C20orf26 Missense_Mutation p.R186H 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 20 20278871 20278871 G A C20orf26 Missense_Mutation p.R1088Q 0.27 deleterious(0.04) benign(0.333) TCGA-AA-A00N-01 20 20620527 20620527 C A RALGAPA2 Nonsense_Mutation p.E190* 0.28 TCGA-AA-A00N-01 20 21213426 21213426 C T PLK1S1 RNA 0.25 TCGA-AA-A00N-01 20 21319706 21319706 G T XRN2 Nonsense_Mutation p.E420* 0.21 TCGA-AA-A00N-01 20 23028426 23028426 C T THBD Silent p.P572P 0.27 TCGA-AA-A00N-01 20 23065728 23065728 C T CD93 Missense_Mutation p.E368K 0.20 tolerated(0.31) benign(0.023) TCGA-AA-A00N-01 20 23666424 23666424 G A CST4 3'UTR 0.22 TCGA-AA-A00N-01 20 23728511 23728511 T C CST1 Missense_Mutation p.Y123C 0.21 deleterious(0) benign(0.008) TCGA-AA-A00N-01 20 23729740 23729740 G A CST1 Silent p.F85F 0.18 TCGA-AA-A00N-01 20 23966394 23966394 G A GGTLC1 Silent p.F147F 0.06 TCGA-AA-A00N-01 20 25259050 25259050 C T PYGB Silent p.F317F 0.19 TCGA-AA-A00N-01 20 25472121 25472121 G A NINL Missense_Mutation p.R451W 0.25 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 20 2636275 2636275 C T NOP56 Silent p.I264I 0.16 TCGA-AA-A00N-01 20 2639165 2639165 G A IDH3B 3'UTR 0.38 TCGA-AA-A00N-01 20 2845219 2845219 G A VPS16 Silent p.T615T 0.26 TCGA-AA-A00N-01 20 29956451 29956451 A G DEFB118 5'UTR 0.17 TCGA-AA-A00N-01 20 29965236 29965236 C T DEFB118 3'Flank 0.31 TCGA-AA-A00N-01 20 29992830 29992830 T G DEFB121 Silent p.V39V 0.22 TCGA-AA-A00N-01 20 30156994 30156994 C T HM13 Missense_Mutation p.S418L 0.28 deleterious_low_confidence(0.02) benign(0.005) TCGA-AA-A00N-01 20 30358206 30358206 A C TPX2 Missense_Mutation p.K139N 0.20 deleterious(0.04) benign(0.004) TCGA-AA-A00N-01 20 30381810 30381810 G T TPX2 Nonsense_Mutation p.E557* 0.16 TCGA-AA-A00N-01 20 30525260 30525260 C T TTLL9 Missense_Mutation p.L356F 0.22 deleterious(0.03) possibly_damaging(0.835) TCGA-AA-A00N-01 20 30616834 30616834 C T CCM2L Missense_Mutation p.A369V 0.36 tolerated_low_confidence(0.25) benign(0) TCGA-AA-A00N-01 20 31016149 31016149 C T ASXL1 Missense_Mutation p.S132L 0.08 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 20 31238436 31238436 G A C20orf203 RNA 0.33 TCGA-AA-A00N-01 20 3127235 3127235 T G FASTKD5 3'UTR 0.20 TCGA-AA-A00N-01 20 31389107 31389107 G A DNMT3B Missense_Mutation p.E674K 0.06 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 20 31620812 31620812 G A BPIFB6 Silent p.E40E 0.22 TCGA-AA-A00N-01 20 31652477 31652477 C T BPIFB3 Silent p.I250I 0.15 TCGA-AA-A00N-01 20 31657744 31657744 C A BPIFB3 Silent p.I400I 0.14 TCGA-AA-A00N-01 20 3181081 3181081 G A DDRGK1 Silent p.V105V 0.12 TCGA-AA-A00N-01 20 31879774 31879774 C A BPIFB1 Missense_Mutation p.P193T 0.20 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 20 32376702 32376702 C A ZNF341 Missense_Mutation p.S622Y 0.17 deleterious(0) probably_damaging(0.929) TCGA-AA-A00N-01 20 3311307 3311307 C T C20orf194 Silent p.K362K 0.19 TCGA-AA-A00N-01 20 33122566 33122566 C T DYNLRB1 Missense_Mutation p.R72C 0.31 deleterious(0.03) possibly_damaging(0.741) TCGA-AA-A00N-01 20 33315155 33315155 C T NCOA6 Missense_Mutation p.R2019Q 0.24 possibly_damaging(0.703) TCGA-AA-A00N-01 20 33328767 33328767 C A NCOA6 Nonsense_Mutation p.E1765* 0.05 TCGA-AA-A00N-01 20 33470747 33470747 G A ACSS2 Missense_Mutation p.R110Q 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A00N-01 20 33519831 33519831 G A GSS Missense_Mutation p.P314S 0.24 deleterious(0.03) benign(0.016) TCGA-AA-A00N-01 20 33585061 33585061 C T MYH7B Missense_Mutation p.A1164V 0.21 benign(0.004) TCGA-AA-A00N-01 20 33935045 33935045 G A UQCC1 Silent p.G165G 0.14 TCGA-AA-A00N-01 20 34021880 34021880 T C GDF5 Missense_Mutation p.N445D 0.06 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 20 34082451 34082451 G A CEP250 Missense_Mutation p.R1045Q 0.18 benign(0.013) TCGA-AA-A00N-01 20 34618578 34618578 G T CNBD2 3'UTR 0.28 TCGA-AA-A00N-01 20 35173356 35173356 C T MYL9 Silent p.F23F 0.19 TCGA-AA-A00N-01 20 3520891 3520891 C T ATRN Missense_Mutation p.R173C 0.06 deleterious(0) probably_damaging(0.969) TCGA-AA-A00N-01 20 35293702 35293702 C T NDRG3 Missense_Mutation p.R232H 0.28 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 20 35396423 35396423 G A DSN1 Silent p.V126V 0.16 TCGA-AA-A00N-01 20 3543022 3543022 T C ATRN Missense_Mutation p.V516A 0.07 deleterious(0.03) possibly_damaging(0.595) TCGA-AA-A00N-01 20 35521114 35521114 A C SAMHD1 3'UTR 0.38 TCGA-AA-A00N-01 20 35675569 35675569 G T RBL1 Missense_Mutation p.H498N 0.31 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 20 35740786 35740786 A G MROH8 Missense_Mutation p.Y946H 0.05 deleterious(0.02) probably_damaging(0.992) TCGA-AA-A00N-01 20 35757456 35757456 C A MROH8 Missense_Mutation p.K615N 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 20 36685947 36685947 G T RPRD1B Missense_Mutation p.K143N 0.33 tolerated(0.24) benign(0.005) TCGA-AA-A00N-01 20 36758675 36758675 G A TGM2 Silent p.S670S 0.17 TCGA-AA-A00N-01 20 36841823 36841823 G A KIAA1755 Missense_Mutation p.A1075V 0.24 tolerated(0.16) benign(0.051) TCGA-AA-A00N-01 20 37534689 37534689 G T PPP1R16B Missense_Mutation p.K258N 0.14 deleterious(0) possibly_damaging(0.746) TCGA-AA-A00N-01 20 37546833 37546833 G A PPP1R16B Missense_Mutation p.E410K 0.19 tolerated(0.47) benign(0.011) TCGA-AA-A00N-01 20 3759443 3759443 C A SPEF1 Missense_Mutation p.Q143H 0.20 deleterious(0.05) possibly_damaging(0.661) TCGA-AA-A00N-01 20 3765257 3765257 C T CENPB 3'UTR 0.23 TCGA-AA-A00N-01 20 3925821 3925821 T C RNF24 Intron 0.18 TCGA-AA-A00N-01 20 39803216 39803216 C A PLCG1 3'UTR 0.11 TCGA-AA-A00N-01 20 39977478 39977478 G A LPIN3 Missense_Mutation p.A170T 0.15 tolerated(0.68) benign(0.001) TCGA-AA-A00N-01 20 40710566 40710566 C T PTPRT Missense_Mutation p.V1410M 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 20 40730799 40730799 C A PTPRT Nonsense_Mutation p.E1227* 0.19 TCGA-AA-A00N-01 20 42089365 42089365 C T SRSF6 Nonsense_Mutation p.R233* 0.27 TCGA-AA-A00N-01 20 42089576 42089576 C T SRSF6 Missense_Mutation p.S303L 0.10 deleterious_low_confidence(0) benign(0.194) TCGA-AA-A00N-01 20 42164723 42164723 C A L3MBTL1 Intron 0.15 TCGA-AA-A00N-01 20 42196571 42196571 C T SGK2 Missense_Mutation p.R114C 0.09 deleterious(0.02) possibly_damaging(0.849) TCGA-AA-A00N-01 20 43135507 43135507 G A SERINC3 Silent p.C248C 0.07 TCGA-AA-A00N-01 20 43356272 43356272 G A WISP2 3'UTR 0.47 TCGA-AA-A00N-01 20 43385614 43385614 G A RIMS4 Silent p.V173V 0.20 TCGA-AA-A00N-01 20 43929858 43929858 T A MATN4 Missense_Mutation p.D258V 0.29 possibly_damaging(0.813) TCGA-AA-A00N-01 20 43995542 43995542 G A SYS1 Silent p.R86R 0.17 TCGA-AA-A00N-01 20 44170792 44170792 G A EPPIN Intron 0.16 TCGA-AA-A00N-01 20 44403082 44403082 C A WFDC3 Missense_Mutation p.E227D 0.12 tolerated_low_confidence(0.19) benign(0.001) TCGA-AA-A00N-01 20 44445491 44445491 C T UBE2C 3'UTR 0.14 TCGA-AA-A00N-01 20 44451876 44451876 C A TNNC2 3'UTR 0.19 TCGA-AA-A00N-01 20 44452680 44452680 G A TNNC2 Missense_Mutation p.S134F 0.17 deleterious(0) possibly_damaging(0.62) TCGA-AA-A00N-01 20 44469547 44469547 C T SNX21 Silent p.F239F 0.22 TCGA-AA-A00N-01 20 44574918 44574918 G A PCIF1 Missense_Mutation p.R503Q 0.08 tolerated(0.07) possibly_damaging(0.459) TCGA-AA-A00N-01 20 44586496 44586496 G A ZNF335 Silent p.G775G 0.18 TCGA-AA-A00N-01 20 44663593 44663593 G A SLC12A5 Missense_Mutation p.G43D 0.07 tolerated(0.08) benign(0.071) TCGA-AA-A00N-01 20 44699120 44699120 G A NCOA5 Nonsense_Mutation p.R32* 0.18 TCGA-AA-A00N-01 20 44986401 44986401 G A SLC35C2 Silent p.F44F 0.14 TCGA-AA-A00N-01 20 45212273 45212273 A G SLC13A3 Missense_Mutation p.V386A 0.14 tolerated(1) benign(0.158) TCGA-AA-A00N-01 20 45315700 45315700 G A TP53RK Nonsense_Mutation p.R152* 0.23 TCGA-AA-A00N-01 20 45725763 45725763 T G EYA2 Missense_Mutation p.F282V 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 20 45874842 45874842 C T ZMYND8 Missense_Mutation p.E732K 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A00N-01 20 46275836 46275836 A C NCOA3 Missense_Mutation p.K1091T 0.23 tolerated(0.08) benign(0.14) TCGA-AA-A00N-01 20 4682181 4682181 A C PRNP 3'UTR 0.21 TCGA-AA-A00N-01 20 4682221 4682221 G A PRNP 3'UTR 0.21 TCGA-AA-A00N-01 20 4707997 4707997 G A PRND 3'UTR 0.06 TCGA-AA-A00N-01 20 47267569 47267569 C A PREX1 Missense_Mutation p.D894Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 20 47276543 47276543 C T PREX1 Missense_Mutation p.E599K 0.23 deleterious(0) benign(0.012) TCGA-AA-A00N-01 20 47621724 47621724 C A ARFGEF2 Missense_Mutation p.L1184M 0.18 deleterious(0.02) probably_damaging(1) TCGA-AA-A00N-01 20 4766954 4766954 G A RASSF2 Silent p.F278F 0.19 TCGA-AA-A00N-01 20 47849867 47849867 G A DDX27 Silent p.E383E 0.13 TCGA-AA-A00N-01 20 47897069 47897069 G A ZNFX1 5'Flank 0.20 TCGA-AA-A00N-01 20 48256324 48256324 C T B4GALT5 Missense_Mutation p.E270K 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A00N-01 20 48439631 48439631 G A SLC9A8 Missense_Mutation p.R81Q 0.04 tolerated(0.86) benign(0.003) TCGA-AA-A00N-01 20 49196346 49196346 G T PTPN1 Missense_Mutation p.C324F 0.17 tolerated_low_confidence(0.68) benign(0.067) TCGA-AA-A00N-01 20 49509472 49509472 T C ADNP Silent p.P593P 0.14 TCGA-AA-A00N-01 20 49551763 49551763 G T DPM1 Nonsense_Mutation p.S230* 0.19 TCGA-AA-A00N-01 20 49552759 49552759 A C DPM1 Missense_Mutation p.C202G 0.07 deleterious(0) benign(0.096) TCGA-AA-A00N-01 20 51872998 51872998 C T TSHZ2 Missense_Mutation p.R1001W 0.07 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 20 52188287 52188288 - T ZNF217 Frame_Shift_Ins p.T1048Nfs*5 0.15 TCGA-AA-A00N-01 20 52192435 52192435 C T ZNF217 Silent p.P956P 0.19 TCGA-AA-A00N-01 20 52193292 52193292 C T ZNF217 Missense_Mutation p.A671T 0.26 tolerated(0.52) benign(0.004) TCGA-AA-A00N-01 20 52786136 52786136 A C CYP24A1 Missense_Mutation p.F212C 0.14 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 20 55043790 55043790 G T RTFDC1 Nonsense_Mutation p.E13* 0.20 TCGA-AA-A00N-01 20 55071912 55071912 G A GCNT7 Silent p.F129F 0.22 TCGA-AA-A00N-01 20 55072170 55072170 A C GCNT7 Missense_Mutation p.F43L 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 20 55099955 55099955 G A FAM209A Missense_Mutation p.E31K 0.13 tolerated(0.06) benign(0.003) TCGA-AA-A00N-01 20 55111265 55111265 G A FAM209B Missense_Mutation p.R96H 0.18 tolerated(0.21) benign(0) TCGA-AA-A00N-01 20 55206907 55206907 G A TFAP2C Missense_Mutation p.R194H 0.24 deleterious(0) possibly_damaging(0.84) TCGA-AA-A00N-01 20 55750022 55750022 C T BMP7 Missense_Mutation p.E334K 0.14 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 20 55908298 55908298 C A SPO11 Silent p.I100I 0.21 TCGA-AA-A00N-01 20 56089711 56089711 C T CTCFL Missense_Mutation p.E423K 0.29 deleterious(0.04) benign(0.234) TCGA-AA-A00N-01 20 56138669 56138669 G A PCK1 Missense_Mutation p.A283T 0.08 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 20 56814833 56814833 G A PPP4R1L 3'UTR 0.14 TCGA-AA-A00N-01 20 57415402 57415402 G A RP4-806M20.3 5'Flank 0.19 TCGA-AA-A00N-01 20 57415920 57415920 C A RP4-806M20.3 5'Flank 0.06 TCGA-AA-A00N-01 20 57828124 57828124 A C ZNF831 Missense_Mutation p.Q1373H 0.14 tolerated(0.3) benign(0.003) TCGA-AA-A00N-01 20 57829218 57829218 A G ZNF831 Missense_Mutation p.D1485G 0.08 deleterious(0.04) benign(0.013) TCGA-AA-A00N-01 20 58318178 58318178 G A PHACTR3 Silent p.T45T 0.09 TCGA-AA-A00N-01 20 58349431 58349431 A G PHACTR3 Missense_Mutation p.T354A 0.18 tolerated(0.25) benign(0.001) TCGA-AA-A00N-01 20 58495414 58495414 C A SYCP2 Missense_Mutation p.K99N 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 20 58519303 58519303 G T FAM217B Missense_Mutation p.R102I 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 20 58520358 58520358 T C FAM217B 3'UTR 0.08 TCGA-AA-A00N-01 20 58520853 58520853 C A FAM217B 3'UTR 0.29 TCGA-AA-A00N-01 20 58521834 58521834 G A FAM217B 3'UTR 0.06 TCGA-AA-A00N-01 20 58522069 58522069 G T FAM217B 3'UTR 0.19 TCGA-AA-A00N-01 20 5903275 5903275 G T CHGB Missense_Mutation p.R162I 0.22 tolerated(0.13) possibly_damaging(0.544) TCGA-AA-A00N-01 20 5948091 5948091 A G MCM8 Silent p.E295E 0.23 TCGA-AA-A00N-01 20 60294154 60294154 C T RP11-429E11.3 Missense_Mutation p.D25N 0.27 possibly_damaging(0.737) TCGA-AA-A00N-01 20 60574066 60574066 C T TAF4 Silent p.E962E 0.08 TCGA-AA-A00N-01 20 60895896 60895896 C T LAMA5 Missense_Mutation p.A2183T 0.10 benign(0.126) TCGA-AA-A00N-01 20 61050200 61050200 G A GATA5 Silent p.F126F 0.25 TCGA-AA-A00N-01 20 61477199 61477199 G T TCFL5 Intron 0.08 TCGA-AA-A00N-01 20 61542778 61542778 G A DIDO1 Missense_Mutation p.R63C 0.23 probably_damaging(0.999) TCGA-AA-A00N-01 20 61637663 61637663 G A BHLHE23 Missense_Mutation p.S139F 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 20 61878933 61878933 G A NKAIN4 Silent p.I156I 0.08 TCGA-AA-A00N-01 20 61914194 61914194 G A ARFGAP1 Silent p.A236A 0.18 TCGA-AA-A00N-01 20 61916251 61916251 G A ARFGAP1 Missense_Mutation p.V261I 0.11 tolerated(0.06) benign(0.078) TCGA-AA-A00N-01 20 61929314 61929314 G A COL20A1 Silent p.K45K 0.25 TCGA-AA-A00N-01 20 62321365 62321365 G T RTEL1 Intron 0.28 TCGA-AA-A00N-01 20 62577254 62577254 G A UCKL1 Silent p.F162F 0.20 TCGA-AA-A00N-01 20 62680204 62680204 C T SOX18 Missense_Mutation p.R157H 0.16 deleterious(0) possibly_damaging(0.522) TCGA-AA-A00N-01 20 62729174 62729174 G A OPRL1 Missense_Mutation p.A85T 0.28 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 20 62839221 62839221 C T MYT1 Silent p.V224V 0.18 TCGA-AA-A00N-01 20 745858 745858 G A SLC52A3 Silent p.I187I 0.08 TCGA-AA-A00N-01 20 76778 76778 A G DEFB125 Missense_Mutation p.Y64C 0.23 deleterious(0.04) probably_damaging(0.926) TCGA-AA-A00N-01 20 7864275 7864275 C T HAO1 Missense_Mutation p.V360M 0.27 deleterious(0) probably_damaging(0.977) TCGA-AA-A00N-01 20 8352096 8352096 A C PLCB1 Missense_Mutation p.K82T 0.17 deleterious(0) benign(0.011) TCGA-AA-A00N-01 20 8769288 8769288 A C PLCB1 Missense_Mutation p.K1066T 0.07 deleterious(0) possibly_damaging(0.587) TCGA-AA-A00N-01 20 9317855 9317855 T C PLCB4 Splice_Site p.X55_splice 0.19 TCGA-AA-A00N-01 20 9459604 9459604 G A PLCB4 Missense_Mutation p.R1178Q 0.17 tolerated_low_confidence(0.39) benign(0.091) TCGA-AA-A00N-01 20 9561352 9561352 C T PAK7 Missense_Mutation p.E144K 0.27 tolerated(0.21) benign(0.053) TCGA-AA-A00N-01 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.06 deleterious(0.03) possibly_damaging(0.883) TCGA-AA-A00N-01 21 11021150 11021150 A G BAGE2 RNA 0.05 TCGA-AA-A00N-01 21 11038753 11038753 G T BAGE2 RNA 0.05 TCGA-AA-A00N-01 21 15481367 15481367 C A LIPI Missense_Mutation p.D465Y 0.15 deleterious(0) benign(0.409) TCGA-AA-A00N-01 21 17222110 17222110 G A USP25 Intron 0.20 TCGA-AA-A00N-01 21 17236744 17236744 G A USP25 Missense_Mutation p.R832K 0.19 tolerated(0.66) benign(0.066) TCGA-AA-A00N-01 21 17250772 17250772 G A USP25 Missense_Mutation p.R1049Q 0.27 tolerated(0.2) probably_damaging(0.96) TCGA-AA-A00N-01 21 22804553 22804553 G T NCAM2 Nonsense_Mutation p.E536* 0.13 TCGA-AA-A00N-01 21 22849746 22849746 G A NCAM2 Silent p.P677P 0.25 TCGA-AA-A00N-01 21 26978910 26978910 C T MRPL39 Missense_Mutation p.R44Q 0.16 tolerated(0.13) benign(0.128) TCGA-AA-A00N-01 21 27130485 27130485 C A GABPA Missense_Mutation p.L240I 0.35 deleterious(0.02) probably_damaging(0.936) TCGA-AA-A00N-01 21 28212814 28212814 G A ADAMTS1 Silent p.Y482Y 0.17 TCGA-AA-A00N-01 21 28315794 28315794 C T ADAMTS5 Missense_Mutation p.R437H 0.27 tolerated(1) probably_damaging(0.985) TCGA-AA-A00N-01 21 30318238 30318238 A G LTN1 Missense_Mutation p.V1266A 0.31 deleterious(0.02) benign(0.06) TCGA-AA-A00N-01 21 30338724 30338724 C T LTN1 Missense_Mutation p.E743K 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 21 30411452 30411452 G T USP16 Nonsense_Mutation p.E280* 0.19 TCGA-AA-A00N-01 21 30949360 30949360 G A GRIK1 Missense_Mutation p.S685L 0.19 deleterious(0) possibly_damaging(0.871) TCGA-AA-A00N-01 21 31587446 31587446 A G CLDN8 3'UTR 0.22 TCGA-AA-A00N-01 21 31661715 31661715 G A KRTAP25-1 Missense_Mutation p.R32C 0.29 deleterious(0.02) benign(0.293) TCGA-AA-A00N-01 21 31812882 31812882 G T KRTAP15-1 Missense_Mutation p.K79N 0.33 deleterious(0.04) benign(0.027) TCGA-AA-A00N-01 21 31852583 31852583 G A KRTAP19-1 Silent p.F18F 0.26 TCGA-AA-A00N-01 21 31864229 31864229 C G KRTAP19-3 Missense_Mutation p.G16A 0.18 deleterious_low_confidence(0) unknown(0) TCGA-AA-A00N-01 21 31869357 31869357 G T KRTAP19-4 Silent p.G24G 0.14 TCGA-AA-A00N-01 21 31992968 31992968 C A KRTAP20-4 5'UTR 0.18 TCGA-AA-A00N-01 21 32508252 32508252 G A TIAM1 Silent p.F1294F 0.27 TCGA-AA-A00N-01 21 32567612 32567612 C A TIAM1 Nonsense_Mutation p.E835* 0.19 TCGA-AA-A00N-01 21 32589946 32589946 G A TIAM1 Nonsense_Mutation p.R689* 0.05 TCGA-AA-A00N-01 21 32624316 32624316 C T TIAM1 Missense_Mutation p.E385K 0.35 deleterious(0.03) possibly_damaging(0.89) TCGA-AA-A00N-01 21 33678964 33678964 C T MRAP Silent p.I40I 0.22 TCGA-AA-A00N-01 21 33696875 33696875 C T URB1 Missense_Mutation p.R1720Q 0.26 tolerated(0.21) benign(0.014) TCGA-AA-A00N-01 21 33716962 33716962 C T URB1 Missense_Mutation p.V1392M 0.18 tolerated(0.12) benign(0.012) TCGA-AA-A00N-01 21 34012087 34012087 C T SYNJ1 Silent p.T1236T 0.24 TCGA-AA-A00N-01 21 34142146 34142146 C A PAXBP1 Nonsense_Mutation p.E151* 0.20 TCGA-AA-A00N-01 21 34142228 34142228 C A PAXBP1 Missense_Mutation p.K123N 0.18 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 21 34400312 34400312 C T OLIG2 3'UTR 0.18 TCGA-AA-A00N-01 21 34614227 34614227 G T IFNAR2 5'UTR 0.26 TCGA-AA-A00N-01 21 34655492 34655492 C T IL10RB Missense_Mutation p.R198W 0.22 tolerated(0.15) benign(0.008) TCGA-AA-A00N-01 21 34793927 34793927 G A IFNGR2 Missense_Mutation p.R116Q 0.18 tolerated(0.1) possibly_damaging(0.56) TCGA-AA-A00N-01 21 34861392 34861392 G T DNAJC28 Silent p.L103L 0.16 TCGA-AA-A00N-01 21 34911642 34911642 A C GART Intron 0.26 TCGA-AA-A00N-01 21 35138281 35138281 T G ITSN1 Silent p.P297P 0.17 TCGA-AA-A00N-01 21 35169685 35169685 G A ITSN1 Missense_Mutation p.R652Q 0.08 tolerated(0.27) benign(0.166) TCGA-AA-A00N-01 21 35195813 35195813 C T ITSN1 Silent p.Y1013Y 0.08 TCGA-AA-A00N-01 21 35475782 35475782 T C SLC5A3 3'UTR 0.25 TCGA-AA-A00N-01 21 35497666 35497666 G A MRPS6 Missense_Mutation p.R24H 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 21 35821910 35821910 G A KCNE1 Missense_Mutation p.A8V 0.25 tolerated(0.22) benign(0.03) TCGA-AA-A00N-01 21 36421260 36421260 G A RUNX1 5'UTR 0.26 TCGA-AA-A00N-01 21 37510214 37510214 G A CBR3 Silent p.P127P 0.28 TCGA-AA-A00N-01 21 37623478 37623478 T G DOPEY2 Missense_Mutation p.L1673V 0.17 deleterious(0.02) possibly_damaging(0.751) TCGA-AA-A00N-01 21 37711184 37711184 G T MORC3 Missense_Mutation p.K191N 0.23 deleterious(0) benign(0.342) TCGA-AA-A00N-01 21 37742118 37742118 G A MORC3 Missense_Mutation p.D818N 0.24 tolerated(0.35) benign(0.195) TCGA-AA-A00N-01 21 38536358 38536358 G A TTC3 Missense_Mutation p.R1059Q 0.21 tolerated(0.59) benign(0.005) TCGA-AA-A00N-01 21 38538153 38538153 G A TTC3 Missense_Mutation p.E1213K 0.16 deleterious(0) possibly_damaging(0.881) TCGA-AA-A00N-01 21 38853090 38853090 G A DYRK1A Missense_Mutation p.E160K 0.22 deleterious(0.04) benign(0.276) TCGA-AA-A00N-01 21 40186831 40186831 A C ETS2 Missense_Mutation p.K144T 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 21 40601356 40601356 C A BRWD1 Nonsense_Mutation p.E1003* 0.27 TCGA-AA-A00N-01 21 40670402 40670402 G T BRWD1 Missense_Mutation p.S102Y 0.23 deleterious(0) probably_damaging(0.982) TCGA-AA-A00N-01 21 40883691 40883691 G A SH3BGR Missense_Mutation p.E237K 0.26 deleterious_low_confidence(0) unknown(0) TCGA-AA-A00N-01 21 40977938 40977938 G T C21orf88 Intron 0.08 TCGA-AA-A00N-01 21 40978194 40978194 C T C21orf88 Intron 0.21 TCGA-AA-A00N-01 21 41143130 41143130 C T IGSF5 Missense_Mutation p.R236W 0.19 deleterious(0.01) benign(0.28) TCGA-AA-A00N-01 21 42064770 42064770 G T DSCAM Silent p.V158V 0.12 TCGA-AA-A00N-01 21 43786578 43786578 G T TFF1 Silent p.I9I 0.19 TCGA-AA-A00N-01 21 43815561 43815561 G A TMPRSS3 5'UTR 0.17 TCGA-AA-A00N-01 21 44153528 44153528 G A PDE9A Missense_Mutation p.R187H 0.25 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A00N-01 21 44270102 44270102 G A WDR4 3'UTR 0.29 TCGA-AA-A00N-01 21 44430205 44430205 T C PKNOX1 Silent p.C74C 0.17 TCGA-AA-A00N-01 21 45096691 45096691 C T RRP1B Missense_Mutation p.T231M 0.18 tolerated(0.2) benign(0.032) TCGA-AA-A00N-01 21 45833804 45833804 C A TRPM2 Missense_Mutation p.P998H 0.24 tolerated(0.16) probably_damaging(0.981) TCGA-AA-A00N-01 21 46011460 46011460 G A KRTAP10-6 Silent p.S302S 0.21 TCGA-AA-A00N-01 21 46491895 46491895 G A ADARB1 5'Flank 0.29 TCGA-AA-A00N-01 21 47360114 47360114 G A PCBP3 Splice_Site p.X360_splice 0.26 TCGA-AA-A00N-01 21 47410307 47410307 C T COL6A1 Missense_Mutation p.R325C 0.27 deleterious(0.02) unknown(0) TCGA-AA-A00N-01 21 47418064 47418064 C T COL6A1 Silent p.T518T 0.26 TCGA-AA-A00N-01 21 47424005 47424005 G A COL6A1 3'UTR 0.32 TCGA-AA-A00N-01 21 47532246 47532246 G A COL6A2 Missense_Mutation p.A157T 0.19 tolerated(0.05) probably_damaging(0.957) TCGA-AA-A00N-01 21 47532341 47532341 C T COL6A2 Silent p.F188F 0.32 TCGA-AA-A00N-01 21 47545909 47545909 C T COL6A2 Missense_Mutation p.A727V 0.14 tolerated(0.48) possibly_damaging(0.771) TCGA-AA-A00N-01 21 47636337 47636337 G A LSS Missense_Mutation p.A250V 0.17 tolerated(0.2) benign(0.194) TCGA-AA-A00N-01 21 47695123 47695123 C T MCM3AP Missense_Mutation p.E659K 0.16 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 21 47695124 47695124 G A MCM3AP Silent p.F658F 0.25 TCGA-AA-A00N-01 21 47959810 47959810 G A DIP2A Missense_Mutation p.A648T 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 21 48022197 48022197 G T S100B Missense_Mutation p.F44L 0.17 tolerated(0.12) benign(0.093) TCGA-AA-A00N-01 22 17082969 17082969 G T TPTEP1 RNA 0.22 TCGA-AA-A00N-01 22 17119579 17119579 C T TPTEP1 RNA 0.31 TCGA-AA-A00N-01 22 17472793 17472793 T G GAB4 Missense_Mutation p.I150L 0.25 tolerated(0.13) benign(0.394) TCGA-AA-A00N-01 22 18166077 18166077 A C BCL2L13 Missense_Mutation p.E73D 0.26 deleterious(0.04) benign(0.009) TCGA-AA-A00N-01 22 18358298 18358298 C T MICAL3 Intron 0.20 TCGA-AA-A00N-01 22 18370134 18370134 G A MICAL3 Silent p.F653F 0.05 TCGA-AA-A00N-01 22 18979219 18979219 C A DGCR5 RNA 0.50 TCGA-AA-A00N-01 22 19028642 19028642 C T DGCR2 Missense_Mutation p.G442D 0.25 tolerated(1) benign(0.001) TCGA-AA-A00N-01 22 19338952 19338952 G A HIRA Nonsense_Mutation p.R956* 0.12 TCGA-AA-A00N-01 22 19393364 19393364 C A HIRA Missense_Mutation p.K114N 0.19 deleterious(0) possibly_damaging(0.447) TCGA-AA-A00N-01 22 19398255 19398255 G A HIRA Silent p.F28F 0.22 TCGA-AA-A00N-01 22 20114575 20114575 A C RANBP1 Nonstop_Mutation p.*202Yext*16 0.33 TCGA-AA-A00N-01 22 20457564 20457564 G T RIMBP3 Missense_Mutation p.F1246L 0.32 tolerated(0.42) benign(0.034) TCGA-AA-A00N-01 22 20819441 20819441 G A KLHL22 Silent p.S272S 0.08 TCGA-AA-A00N-01 22 21044674 21044674 G A POM121L4P RNA 0.52 TCGA-AA-A00N-01 22 21288189 21288189 A C CRKL Missense_Mutation p.K145T 0.26 deleterious(0.03) probably_damaging(0.986) TCGA-AA-A00N-01 22 21350041 21350041 C A LZTR1 Missense_Mutation p.S650Y 0.25 deleterious(0) possibly_damaging(0.804) TCGA-AA-A00N-01 22 21383503 21383503 G A SLC7A4 Silent p.F583F 0.22 TCGA-AA-A00N-01 22 21470374 21470374 G A KB-1592A4.15 RNA 0.16 TCGA-AA-A00N-01 22 21990877 21990877 G A CCDC116 Missense_Mutation p.E454K 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 22 22869292 22869292 C T ZNF280A Silent p.Q221Q 0.18 TCGA-AA-A00N-01 22 23029254 23029254 C T IGLV3-25 Missense_Mutation p.L8F 0.18 deleterious(0.03) benign(0.397) TCGA-AA-A00N-01 22 23077443 23077443 A G IGLV2-18 Missense_Mutation p.N74D 0.23 tolerated_low_confidence(0.14) benign(0.064) TCGA-AA-A00N-01 22 23974093 23974093 C A C22orf43 Nonsense_Mutation p.E40* 0.18 TCGA-AA-A00N-01 22 24026010 24026010 C T KB-1572G7.2 RNA 0.15 TCGA-AA-A00N-01 22 24968092 24968092 G T SNRPD3 3'UTR 0.24 TCGA-AA-A00N-01 22 25016351 25016351 C T GGT1 Missense_Mutation p.R147W 0.08 deleterious(0) possibly_damaging(0.652) TCGA-AA-A00N-01 22 25120970 25120970 C T PIWIL3 Silent p.S714S 0.07 TCGA-AA-A00N-01 22 25123976 25123976 G A PIWIL3 Silent p.I659I 0.10 TCGA-AA-A00N-01 22 25150044 25150044 G A PIWIL3 Missense_Mutation p.A305V 0.15 tolerated(0.88) benign(0.037) TCGA-AA-A00N-01 22 25315953 25315953 C A SGSM1 Missense_Mutation p.F1117L 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 22 26164985 26164985 G A MYO18B Missense_Mutation p.D368N 0.26 tolerated_low_confidence(0.39) benign(0.08) TCGA-AA-A00N-01 22 26247519 26247519 G A MYO18B Silent p.S1286S 0.28 TCGA-AA-A00N-01 22 26348311 26348311 C T MYO18B Silent p.I1964I 0.20 TCGA-AA-A00N-01 22 26688248 26688248 T G SEZ6L Intron 0.33 TCGA-AA-A00N-01 22 26706726 26706726 C T SEZ6L Silent p.S535S 0.19 TCGA-AA-A00N-01 22 26877848 26877848 T G HPS4 5'UTR 0.19 TCGA-AA-A00N-01 22 26902803 26902803 C T TFIP11 Missense_Mutation p.E101K 0.27 tolerated(0.16) benign(0.031) TCGA-AA-A00N-01 22 28146921 28146921 G A MN1 Silent p.F1315F 0.28 TCGA-AA-A00N-01 22 28292579 28292579 G A PITPNB Silent p.I111I 0.18 TCGA-AA-A00N-01 22 28307015 28307015 T C PITPNB Missense_Mutation p.N45S 0.06 deleterious(0.01) possibly_damaging(0.505) TCGA-AA-A00N-01 22 29904480 29904480 T G THOC5 Missense_Mutation p.Y673S 0.22 deleterious(0) benign(0.403) TCGA-AA-A00N-01 22 29935452 29935452 C A THOC5 Nonsense_Mutation p.E156* 0.36 TCGA-AA-A00N-01 22 29954909 29954909 C T NIPSNAP1 Missense_Mutation p.R247Q 0.26 deleterious(0.03) possibly_damaging(0.847) TCGA-AA-A00N-01 22 30060981 30060981 T G NF2 Missense_Mutation p.F271L 0.23 tolerated(0.15) benign(0.074) TCGA-AA-A00N-01 22 30123652 30123652 G A CABP7 Silent p.E37E 0.21 TCGA-AA-A00N-01 22 30688333 30688333 G T TBC1D10A 3'UTR 0.09 TCGA-AA-A00N-01 22 30762122 30762122 C T CCDC157 Missense_Mutation p.R45C 0.27 deleterious(0) benign(0.003) TCGA-AA-A00N-01 22 30856120 30856120 C T SEC14L3 Missense_Mutation p.R364H 0.17 tolerated(0.05) possibly_damaging(0.681) TCGA-AA-A00N-01 22 30890140 30890140 G A SEC14L4 Nonsense_Mutation p.R193* 0.25 TCGA-AA-A00N-01 22 30951867 30951867 G A GAL3ST1 Silent p.F115F 0.21 TCGA-AA-A00N-01 22 31523001 31523001 G A INPP5J Missense_Mutation p.R162H 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 22 31685181 31685181 C A PIK3IP1 Intron 0.19 TCGA-AA-A00N-01 22 31854494 31854494 G T EIF4ENIF1 Missense_Mutation p.F310L 0.28 deleterious(0.03) probably_damaging(0.987) TCGA-AA-A00N-01 22 31859810 31859810 G A EIF4ENIF1 Missense_Mutation p.R148C 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 22 31981079 31981079 G A SFI1 Missense_Mutation p.E458K 0.24 tolerated(1) benign(0) TCGA-AA-A00N-01 22 32110992 32110992 A G PRR14L Missense_Mutation p.S945P 0.30 tolerated(0.08) benign(0.015) TCGA-AA-A00N-01 22 32215074 32215074 G T DEPDC5 Missense_Mutation p.G578V 0.21 deleterious(0.04) probably_damaging(1) TCGA-AA-A00N-01 22 32614467 32614467 G T SLC5A4 3'UTR 0.11 TCGA-AA-A00N-01 22 32756957 32756957 C T RFPL3 3'UTR 0.25 TCGA-AA-A00N-01 22 32811962 32811962 T C BPIFC Silent p.G447G 0.23 TCGA-AA-A00N-01 22 33712180 33712180 G A LARGE Nonsense_Mutation p.R448* 0.17 TCGA-AA-A00N-01 22 35689692 35689692 T G HMGXB4 3'UTR 0.19 TCGA-AA-A00N-01 22 36716388 36716388 A G MYH9 Missense_Mutation p.Y297H 0.08 possibly_damaging(0.863) TCGA-AA-A00N-01 22 36722640 36722640 C T MYH9 Silent p.A195A 0.27 TCGA-AA-A00N-01 22 37492005 37492005 G A TMPRSS6 Missense_Mutation p.S186L 0.20 tolerated(0.1) benign(0.311) TCGA-AA-A00N-01 22 38087287 38087287 A G NOL12 Missense_Mutation p.T196A 0.21 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 22 38119603 38119603 G A TRIOBP Missense_Mutation p.R347Q 0.27 tolerated_low_confidence(0.16) possibly_damaging(0.866) TCGA-AA-A00N-01 22 38565252 38565252 T C PLA2G6 Missense_Mutation p.N61S 0.26 tolerated(0.61) benign(0.005) TCGA-AA-A00N-01 22 39135362 39135362 C T SUN2 Missense_Mutation p.A571T 0.23 deleterious(0) benign(0.407) TCGA-AA-A00N-01 22 39476947 39476947 G A APOBEC3G Missense_Mutation p.E61K 0.07 tolerated(1) benign(0.004) TCGA-AA-A00N-01 22 39483458 39483458 G T APOBEC3G 3'UTR 0.26 TCGA-AA-A00N-01 22 39883396 39883396 C T MGAT3 Missense_Mutation p.A15V 0.20 tolerated_low_confidence(0.79) benign(0.01) TCGA-AA-A00N-01 22 39884006 39884006 C T MGAT3 Silent p.F218F 0.25 TCGA-AA-A00N-01 22 39913768 39913768 G C MIEF1 3'UTR 0.29 TCGA-AA-A00N-01 22 40058811 40058811 G A CACNA1I Missense_Mutation p.D1135N 0.26 deleterious(0.01) possibly_damaging(0.555) TCGA-AA-A00N-01 22 40366909 40366909 C T GRAP2 Nonsense_Mutation p.R272* 0.32 TCGA-AA-A00N-01 22 40745899 40745899 G A ADSL Missense_Mutation p.D73N 0.17 tolerated(0.45) benign(0.271) TCGA-AA-A00N-01 22 41173096 41173096 G A SLC25A17 Missense_Mutation p.A214V 0.28 tolerated(0.08) probably_damaging(0.945) TCGA-AA-A00N-01 22 41533773 41533773 G A EP300 Missense_Mutation p.R580Q 0.25 benign(0.133) TCGA-AA-A00N-01 22 41969695 41969695 C T CSDC2 Silent p.G71G 0.16 TCGA-AA-A00N-01 22 42091212 42091212 A G C22orf46 3'UTR 0.23 TCGA-AA-A00N-01 22 42099341 42099341 C T MEI1 Missense_Mutation p.R61C 0.20 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 22 42177819 42177819 C T MEI1 Silent p.F1019F 0.06 TCGA-AA-A00N-01 22 42263037 42263037 A G SREBF2 Silent p.L97L 0.21 TCGA-AA-A00N-01 22 42341283 42341283 G A CENPM Missense_Mutation p.R86C 0.18 tolerated(0.21) benign(0.004) TCGA-AA-A00N-01 22 42390329 42390329 C T SEPT3 Nonsense_Mutation p.R301* 0.13 TCGA-AA-A00N-01 22 42457067 42457067 T G NAGA Missense_Mutation p.K321T 0.26 tolerated(0.08) benign(0.003) TCGA-AA-A00N-01 22 42523529 42523529 G A CYP2D6 Missense_Mutation p.R365C 0.18 deleterious(0.01) probably_damaging(0.943) TCGA-AA-A00N-01 22 43206915 43206915 G T ARFGAP3 Missense_Mutation p.S367Y 0.16 tolerated(0.62) benign(0.197) TCGA-AA-A00N-01 22 43606959 43606959 G A SCUBE1 Silent p.F784F 0.17 TCGA-AA-A00N-01 22 43607039 43607039 G A SCUBE1 Missense_Mutation p.R758C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 22 43933353 43933353 G A EFCAB6 Missense_Mutation p.R1318W 0.23 deleterious(0) probably_damaging(0.982) TCGA-AA-A00N-01 22 43972309 43972309 T C EFCAB6 Silent p.Q1096Q 0.29 TCGA-AA-A00N-01 22 44022549 44022549 G T EFCAB6 Missense_Mutation p.S748Y 0.26 deleterious(0) possibly_damaging(0.729) TCGA-AA-A00N-01 22 44031028 44031028 G A EFCAB6 Silent p.F684F 0.19 TCGA-AA-A00N-01 22 44074010 44074010 G A EFCAB6 Nonsense_Mutation p.R429* 0.10 TCGA-AA-A00N-01 22 44178128 44178128 C A EFCAB6 Missense_Mutation p.R24I 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 22 44258218 44258218 G A SULT4A1 Silent p.F15F 0.19 TCGA-AA-A00N-01 22 44342036 44342036 C T PNPLA3 Missense_Mutation p.S407F 0.21 deleterious(0.03) benign(0.039) TCGA-AA-A00N-01 22 44495947 44495947 C T PARVB Missense_Mutation p.R106C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A00N-01 22 45750972 45750972 G A SMC1B Silent p.I995I 0.06 TCGA-AA-A00N-01 22 45809828 45809828 G A RIBC2 Missense_Mutation p.A16T 0.20 tolerated(0.06) benign(0.234) TCGA-AA-A00N-01 22 45931121 45931121 G A FBLN1 Missense_Mutation p.D276N 0.22 tolerated(0.4) probably_damaging(0.948) TCGA-AA-A00N-01 22 46652465 46652465 A C PKDREJ Missense_Mutation p.V2252G 0.12 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 22 46657202 46657202 T A PKDREJ Missense_Mutation p.K673I 0.18 tolerated(0.22) benign(0.026) TCGA-AA-A00N-01 22 47022658 47022658 C T GRAMD4 5'UTR 0.14 TCGA-AA-A00N-01 22 50436133 50436133 G A IL17REL Silent p.F286F 0.28 TCGA-AA-A00N-01 22 50439549 50439549 G A IL17REL Missense_Mutation p.A24V 0.08 deleterious(0) benign(0.197) TCGA-AA-A00N-01 22 50596721 50596721 A C MOV10L1 Intron 0.26 TCGA-AA-A00N-01 22 50599253 50599253 G A MOV10L1 Missense_Mutation p.R1154Q 0.21 tolerated(0.13) benign(0.012) TCGA-AA-A00N-01 22 50942112 50942112 C T LMF2 Missense_Mutation p.R611H 0.17 deleterious(0.04) possibly_damaging(0.87) TCGA-AA-A00N-01 22 50966082 50966082 G A TYMP Missense_Mutation p.A194V 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A00N-01 22 51117747 51117747 G A SHANK3 Missense_Mutation p.R259H 0.08 probably_damaging(0.998) TCGA-AA-A00N-01 22 51133418 51133418 G A SHANK3 Missense_Mutation p.D416N 0.18 benign(0.17) TCGA-AA-A00N-01 22 51159943 51159943 G A SHANK3 Missense_Mutation p.E1244K 0.42 possibly_damaging(0.771) TCGA-AA-A00N-01 2 100017689 100017689 G A REV1 3'UTR 0.22 TCGA-AA-A00N-01 2 100046382 100046382 C T REV1 Silent p.E489E 0.18 TCGA-AA-A00N-01 2 100623212 100623212 T G AFF3 Missense_Mutation p.K277T 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 2 101881457 101881457 G A CNOT11 Missense_Mutation p.R328Q 0.06 tolerated(0.2) probably_damaging(0.953) TCGA-AA-A00N-01 2 102482895 102482895 T G MAP4K4 Missense_Mutation p.I659S 0.21 tolerated_low_confidence(0.62) benign(0.269) TCGA-AA-A00N-01 2 102490663 102490663 C T MAP4K4 Missense_Mutation p.R919C 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A00N-01 2 103324821 103324821 A G SLC9A2 Missense_Mutation p.D771G 0.06 tolerated(0.48) benign(0) TCGA-AA-A00N-01 2 105892127 105892127 C T TGFBRAP1 Missense_Mutation p.D519N 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 105990140 105990140 C T FHL2 Silent p.S69S 0.07 TCGA-AA-A00N-01 2 106015311 106015311 C A FHL2 5'UTR 0.19 TCGA-AA-A00N-01 2 106497917 106497917 C T NCK2 Silent p.F120F 0.20 TCGA-AA-A00N-01 2 106694283 106694283 C T C2orf40 Silent p.G116G 0.08 TCGA-AA-A00N-01 2 107040194 107040194 C A RGPD3 Missense_Mutation p.R1410I 0.28 tolerated(0.4) probably_damaging(0.968) TCGA-AA-A00N-01 2 108507242 108507242 C T RGPD4 3'UTR 0.05 TCGA-AA-A00N-01 2 108618400 108618400 C T SLC5A7 Silent p.I215I 0.21 TCGA-AA-A00N-01 2 108917317 108917317 C T SULT1C2 Intron 0.25 TCGA-AA-A00N-01 2 108998302 108998302 G A SULT1C4 Missense_Mutation p.R85Q 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-AA-A00N-01 2 109102127 109102127 A C GCC2 Missense_Mutation p.K1217Q 0.04 deleterious(0.02) benign(0.09) TCGA-AA-A00N-01 2 10915134 10915134 G T ATP6V1C2 Missense_Mutation p.E254D 0.20 deleterious(0.04) possibly_damaging(0.534) TCGA-AA-A00N-01 2 109293104 109293104 C T LIMS1 Missense_Mutation p.R292C 0.30 deleterious(0) probably_damaging(0.94) TCGA-AA-A00N-01 2 109380602 109380602 C T RANBP2 Missense_Mutation p.R1203C 0.32 deleterious(0) probably_damaging(0.918) TCGA-AA-A00N-01 2 109383770 109383770 C T RANBP2 Missense_Mutation p.R2259C 0.17 tolerated(0.05) probably_damaging(0.991) TCGA-AA-A00N-01 2 109492744 109492744 T G CCDC138 3'UTR 0.28 TCGA-AA-A00N-01 2 11053446 11053446 G A KCNF1 Silent p.A298A 0.24 TCGA-AA-A00N-01 2 111416286 111416286 G T BUB1 Missense_Mutation p.S437Y 0.27 deleterious(0) possibly_damaging(0.646) TCGA-AA-A00N-01 2 113082544 113082544 G T ZC3H6 Missense_Mutation p.G619V 0.29 deleterious(0.02) possibly_damaging(0.894) TCGA-AA-A00N-01 2 113089046 113089046 G A ZC3H6 Missense_Mutation p.D851N 0.19 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 2 11337745 11337745 C A ROCK2 Missense_Mutation p.E1062D 0.18 tolerated(0.12) possibly_damaging(0.728) TCGA-AA-A00N-01 2 113676303 113676303 A C IL37 Missense_Mutation p.K192Q 0.08 tolerated(0.32) possibly_damaging(0.505) TCGA-AA-A00N-01 2 113820198 113820198 G A IL36RN Missense_Mutation p.E138K 0.21 tolerated(0.5) benign(0.002) TCGA-AA-A00N-01 2 113940371 113940371 T G PSD4 Missense_Mutation p.L113R 0.19 tolerated_low_confidence(0.07) benign(0.001) TCGA-AA-A00N-01 2 113950908 113950908 C T PSD4 Missense_Mutation p.R665C 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 114340629 114340629 G A MIR1302-3 RNA 0.05 TCGA-AA-A00N-01 2 114398999 114398999 C T RABL2A Missense_Mutation p.S159L 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 2 114399376 114399376 C T RABL2A Nonsense_Mutation p.R175* 0.33 TCGA-AA-A00N-01 2 1161257 1161257 C T SNTG2 Silent p.G145G 0.20 TCGA-AA-A00N-01 2 116447276 116447276 C T DPP10 Missense_Mutation p.S156L 0.21 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 2 11716576 11716576 G T GREB1 Missense_Mutation p.K184N 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 2 11720921 11720921 G T GREB1 Missense_Mutation p.K288N 0.26 tolerated(0.1) possibly_damaging(0.56) TCGA-AA-A00N-01 2 11732966 11732966 G A GREB1 Silent p.S470S 0.36 TCGA-AA-A00N-01 2 118703104 118703104 C T CCDC93 Splice_Site p.X450_splice 0.18 TCGA-AA-A00N-01 2 119699964 119699964 G A MARCO Missense_Mutation p.E30K 0.20 tolerated(0.16) benign(0.094) TCGA-AA-A00N-01 2 119914382 119914382 T C C1QL2 Missense_Mutation p.D287G 0.22 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 2 120097455 120097455 G A C2orf76 Silent p.H27H 0.17 TCGA-AA-A00N-01 2 121736098 121736098 C T GLI2 Missense_Mutation p.A486V 0.22 deleterious(0) probably_damaging(0.98) TCGA-AA-A00N-01 2 122120867 122120867 G A CLASP1 Nonsense_Mutation p.R1363* 0.22 TCGA-AA-A00N-01 2 125192088 125192088 G T CNTNAP5 Missense_Mutation p.R186L 0.21 deleterious(0.04) benign(0.113) TCGA-AA-A00N-01 2 125232437 125232437 G A CNTNAP5 Missense_Mutation p.R347Q 0.20 tolerated(0.25) possibly_damaging(0.626) TCGA-AA-A00N-01 2 127961103 127961103 C T CYP27C1 Missense_Mutation p.R8K 0.28 tolerated(0.35) benign(0.007) TCGA-AA-A00N-01 2 128184701 128184701 G T PROC Missense_Mutation p.K233N 0.22 deleterious(0.03) benign(0.358) TCGA-AA-A00N-01 2 128462829 128462829 T C WDR33 3'UTR 0.23 TCGA-AA-A00N-01 2 128479502 128479502 C A WDR33 Nonsense_Mutation p.E527* 0.18 TCGA-AA-A00N-01 2 128947311 128947311 T G UGGT1 Missense_Mutation p.L1555V 0.06 deleterious(0) benign(0.132) TCGA-AA-A00N-01 2 130738899 130738899 C A RAB6C 3'UTR 0.19 TCGA-AA-A00N-01 2 130833023 130833023 C A POTEF Missense_Mutation p.K674N 0.20 deleterious_low_confidence(0.04) benign(0.027) TCGA-AA-A00N-01 2 130872468 130872468 C T POTEF Missense_Mutation p.E266K 0.11 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-AA-A00N-01 2 130877813 130877813 C A POTEF Missense_Mutation p.K92N 0.14 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-AA-A00N-01 2 131487809 131487809 C A GPR148 3'UTR 0.20 TCGA-AA-A00N-01 2 131520407 131520407 C T AMER3 Silent p.F254F 0.16 TCGA-AA-A00N-01 2 131524631 131524631 C T AMER3 3'UTR 0.21 TCGA-AA-A00N-01 2 131704116 131704116 C A ARHGEF4 Missense_Mutation p.S112Y 0.18 deleterious_low_confidence(0.04) benign(0.086) TCGA-AA-A00N-01 2 133540452 133540452 G T NCKAP5 Missense_Mutation p.S1311Y 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 133542123 133542123 A G NCKAP5 Missense_Mutation p.V754A 0.19 tolerated(1) benign(0.002) TCGA-AA-A00N-01 2 133547620 133547620 G A NCKAP5 Silent p.H356H 0.16 TCGA-AA-A00N-01 2 135625293 135625293 C A ACMSD Intron 0.17 TCGA-AA-A00N-01 2 135743812 135743812 G T MAP3K19 Missense_Mutation p.S877Y 0.16 deleterious(0.01) possibly_damaging(0.847) TCGA-AA-A00N-01 2 135870782 135870782 G A RAB3GAP1 Missense_Mutation p.E142K 0.08 deleterious(0) probably_damaging(0.985) TCGA-AA-A00N-01 2 136511744 136511744 T C UBXN4 Missense_Mutation p.V77A 0.25 deleterious(0) benign(0.141) TCGA-AA-A00N-01 2 136575460 136575460 G A LCT Silent p.F386F 0.24 TCGA-AA-A00N-01 2 136579628 136579628 A G LCT Silent p.I316I 0.20 TCGA-AA-A00N-01 2 136590695 136590695 A C LCT Missense_Mutation p.S236A 0.19 tolerated(0.43) benign(0.003) TCGA-AA-A00N-01 2 141108461 141108461 C A LRP1B Missense_Mutation p.D3933Y 0.12 possibly_damaging(0.861) TCGA-AA-A00N-01 2 141128384 141128384 C A LRP1B Missense_Mutation p.D3635Y 0.15 probably_damaging(0.961) TCGA-AA-A00N-01 2 141242937 141242937 C T LRP1B Missense_Mutation p.D3134N 0.19 possibly_damaging(0.539) TCGA-AA-A00N-01 2 141459993 141459993 G T LRP1B Intron 0.17 TCGA-AA-A00N-01 2 141643872 141643872 G A LRP1B Missense_Mutation p.R1267C 0.21 possibly_damaging(0.689) TCGA-AA-A00N-01 2 141665599 141665599 C T LRP1B Missense_Mutation p.E1123K 0.18 probably_damaging(0.931) TCGA-AA-A00N-01 2 141751586 141751586 G A LRP1B Silent p.S874S 0.25 TCGA-AA-A00N-01 2 143743579 143743579 G A KYNU Silent p.T297T 0.24 TCGA-AA-A00N-01 2 144710364 144710364 A C GTDC1 Missense_Mutation p.L393V 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 145156392 145156392 G T ZEB2 Missense_Mutation p.L788I 0.31 deleterious(0) possibly_damaging(0.76) TCGA-AA-A00N-01 2 145157254 145157254 T C ZEB2 Silent p.E500E 0.21 TCGA-AA-A00N-01 2 148693243 148693243 C A ORC4 Nonsense_Mutation p.E383* 0.20 TCGA-AA-A00N-01 2 149247325 149247325 C T MBD5 Missense_Mutation p.A1142V 0.17 deleterious_low_confidence(0) unknown(0) TCGA-AA-A00N-01 2 149528929 149528929 T G EPC2 Missense_Mutation p.L565V 0.26 tolerated(0.52) benign(0.164) TCGA-AA-A00N-01 2 149793804 149793804 C T KIF5C Silent p.L100L 0.19 TCGA-AA-A00N-01 2 150436157 150436157 G A MMADHC Nonsense_Mutation p.R54* 0.33 TCGA-AA-A00N-01 2 152107418 152107418 T G RBM43 3'UTR 0.22 TCGA-AA-A00N-01 2 152293392 152293392 C T RIF1 Missense_Mutation p.S416L 0.14 tolerated(0.07) benign(0.012) TCGA-AA-A00N-01 2 152314404 152314404 C T RIF1 Nonsense_Mutation p.R928* 0.16 TCGA-AA-A00N-01 2 152322277 152322277 C T RIF1 Silent p.D2081D 0.23 TCGA-AA-A00N-01 2 152411549 152411549 G A NEB Missense_Mutation p.R6442W 0.25 probably_damaging(0.997) TCGA-AA-A00N-01 2 152419123 152419123 A G NEB Splice_Site p.X6297_splice 0.20 TCGA-AA-A00N-01 2 152534213 152534213 C T NEB Missense_Mutation p.E1214K 0.14 probably_damaging(0.985) TCGA-AA-A00N-01 2 152544143 152544143 G A NEB Silent p.S840S 0.23 TCGA-AA-A00N-01 2 152717244 152717244 C T CACNB4 Silent p.S283S 0.06 TCGA-AA-A00N-01 2 153549549 153549549 T C PRPF40A Intron 0.21 TCGA-AA-A00N-01 2 15417008 15417008 G A NBAS Nonsense_Mutation p.R1786* 0.11 TCGA-AA-A00N-01 2 154334855 154334855 G A RPRM Silent p.F75F 0.26 TCGA-AA-A00N-01 2 15742751 15742751 G A DDX1 Missense_Mutation p.M129I 0.18 tolerated(0.4) benign(0.002) TCGA-AA-A00N-01 2 158177819 158177819 T C ERMN Silent p.Q286Q 0.18 TCGA-AA-A00N-01 2 158178290 158178290 C A ERMN Missense_Mutation p.E129D 0.18 tolerated(0.08) benign(0.176) TCGA-AA-A00N-01 2 158958556 158958556 C T UPP2 Missense_Mutation p.T51I 0.20 tolerated_low_confidence(0.19) possibly_damaging(0.702) TCGA-AA-A00N-01 2 159481878 159481878 C T PKP4 Silent p.F364F 0.29 TCGA-AA-A00N-01 2 160602422 160602422 G A MARCH7 Missense_Mutation p.R163Q 0.24 deleterious(0.01) possibly_damaging(0.529) TCGA-AA-A00N-01 2 160738726 160738726 T C LY75-CD302 Silent p.A385A 0.18 TCGA-AA-A00N-01 2 162820717 162820717 C T SLC4A10 Missense_Mutation p.P979S 0.20 deleterious(0.02) probably_damaging(1) TCGA-AA-A00N-01 2 163059385 163059385 G A FAP Missense_Mutation p.S407L 0.21 tolerated(0.55) possibly_damaging(0.858) TCGA-AA-A00N-01 2 163130424 163130424 G A IFIH1 Missense_Mutation p.R779C 0.10 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 2 163134140 163134140 G A IFIH1 Missense_Mutation p.A610V 0.14 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 2 163693253 163693253 G A KCNH7 Missense_Mutation p.A34V 0.23 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 2 164466915 164466915 A C FIGN Missense_Mutation p.I476S 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 165551820 165551820 T G COBLL1 Missense_Mutation p.K732N 0.15 deleterious(0.02) benign(0.132) TCGA-AA-A00N-01 2 165953947 165953947 T C SCN3A Missense_Mutation p.M1352V 0.24 deleterious(0.04) benign(0.12) TCGA-AA-A00N-01 2 166165719 166165719 G A SCN2A Missense_Mutation p.R217Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 166848898 166848898 G A SCN1A Silent p.F1629F 0.28 TCGA-AA-A00N-01 2 166898891 166898891 G T SCN1A Missense_Mutation p.S696Y 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A00N-01 2 166904178 166904178 G A SCN1A Nonsense_Mutation p.R377* 0.17 TCGA-AA-A00N-01 2 166908247 166908247 A C SCN1A Missense_Mutation p.S316A 0.21 tolerated(0.62) benign(0.039) TCGA-AA-A00N-01 2 167055814 167055814 A C SCN9A Missense_Mutation p.F1768V 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 167056027 167056027 G T SCN9A Missense_Mutation p.L1697I 0.14 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 2 167085344 167085344 C T SCN9A Missense_Mutation p.D1344N 0.07 tolerated(0.29) benign(0.001) TCGA-AA-A00N-01 2 167322357 167322357 G A SCN7A Nonsense_Mutation p.R269* 0.25 TCGA-AA-A00N-01 2 16743285 16743285 G A FAM49A Silent p.F141F 0.16 TCGA-AA-A00N-01 2 168074699 168074699 C T XIRP2 Silent p.C249C 0.22 TCGA-AA-A00N-01 2 168102324 168102324 C A XIRP2 Silent p.I1474I 0.20 TCGA-AA-A00N-01 2 168102399 168102399 C T XIRP2 Silent p.F1499F 0.26 TCGA-AA-A00N-01 2 168104015 168104015 C T XIRP2 Missense_Mutation p.A2038V 0.21 possibly_damaging(0.888) TCGA-AA-A00N-01 2 168105357 168105357 T G XIRP2 Missense_Mutation p.S2485R 0.21 possibly_damaging(0.499) TCGA-AA-A00N-01 2 168106477 168106477 G A XIRP2 Missense_Mutation p.D2859N 0.21 benign(0.02) TCGA-AA-A00N-01 2 168821198 168821198 C T STK39 Missense_Mutation p.A513T 0.17 tolerated(1) benign(0.004) TCGA-AA-A00N-01 2 1691419 1691419 G A PXDN Missense_Mutation p.A134V 0.19 tolerated(0.34) benign(0.008) TCGA-AA-A00N-01 2 169626180 169626181 - AACT CERS6 3'UTR 0.19 TCGA-AA-A00N-01 2 169727905 169727905 G T SPC25 3'UTR 0.11 TCGA-AA-A00N-01 2 169781216 169781216 A G ABCB11 Missense_Mutation p.I1239T 0.25 deleterious(0) probably_damaging(0.933) TCGA-AA-A00N-01 2 169853172 169853172 G A ABCB11 Silent p.V150V 0.09 TCGA-AA-A00N-01 2 170055311 170055311 T G LRP2 Missense_Mutation p.N2855H 0.16 probably_damaging(0.951) TCGA-AA-A00N-01 2 170129509 170129509 T G LRP2 Missense_Mutation p.N682H 0.23 probably_damaging(0.986) TCGA-AA-A00N-01 2 170147483 170147483 T G LRP2 Missense_Mutation p.K265T 0.16 benign(0.006) TCGA-AA-A00N-01 2 170493045 170493045 T G PPIG Missense_Mutation p.V426G 0.22 tolerated_low_confidence(0.6) unknown(0) TCGA-AA-A00N-01 2 170592269 170592269 G A KLHL23 Missense_Mutation p.E249K 0.30 tolerated(0.42) benign(0.225) TCGA-AA-A00N-01 2 170815005 170815005 G T UBR3 Missense_Mutation p.Q1201H 0.20 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 2 171258002 171258002 C A MYO3B Missense_Mutation p.L644M 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 172196014 172196014 G T METTL8 Missense_Mutation p.H96N 0.14 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 173659805 173659805 G T RAPGEF4 Nonsense_Mutation p.E40* 0.21 TCGA-AA-A00N-01 2 173848281 173848281 T G RAPGEF4 Missense_Mutation p.I354M 0.21 deleterious(0.03) possibly_damaging(0.759) TCGA-AA-A00N-01 2 173883386 173883386 C T RAPGEF4 Silent p.L671L 0.14 TCGA-AA-A00N-01 2 175260282 175260282 T G CIR1 Missense_Mutation p.K23N 0.20 deleterious(0) unknown(0) TCGA-AA-A00N-01 2 175613538 175613538 C T CHRNA1 Missense_Mutation p.D363N 0.05 tolerated(0.36) benign(0.015) TCGA-AA-A00N-01 2 175665003 175665003 G A CHN1 Silent p.H407H 0.21 TCGA-AA-A00N-01 2 175779868 175779868 C T CHN1 Missense_Mutation p.D60N 0.31 tolerated(0.16) probably_damaging(0.995) TCGA-AA-A00N-01 2 176965100 176965100 G A HOXD12 Missense_Mutation p.D191N 0.20 deleterious(0.02) possibly_damaging(0.796) TCGA-AA-A00N-01 2 17697374 17697374 C T RAD51AP2 Missense_Mutation p.G770E 0.21 tolerated(1) benign(0) TCGA-AA-A00N-01 2 17698108 17698108 T G RAD51AP2 Missense_Mutation p.K525N 0.07 tolerated(0.11) benign(0.077) TCGA-AA-A00N-01 2 17699171 17699171 C A RAD51AP2 Missense_Mutation p.R171I 0.19 deleterious(0.01) benign(0.187) TCGA-AA-A00N-01 2 177016375 177016375 C T HOXD4 Missense_Mutation p.S5L 0.08 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 2 177191555 177191555 A G MTX2 Missense_Mutation p.K71E 0.19 deleterious(0) possibly_damaging(0.549) TCGA-AA-A00N-01 2 178095718 178095718 T G NFE2L2 Missense_Mutation p.K538T 0.27 deleterious(0) probably_damaging(0.926) TCGA-AA-A00N-01 2 178416678 178416678 C A TTC30B Nonsense_Mutation p.E272* 0.26 TCGA-AA-A00N-01 2 178417054 178417054 C A TTC30B Missense_Mutation p.E146D 0.15 tolerated_low_confidence(0.2) benign(0.001) TCGA-AA-A00N-01 2 178528616 178528616 C T PDE11A Missense_Mutation p.S875N 0.26 tolerated(0.05) possibly_damaging(0.587) TCGA-AA-A00N-01 2 178762794 178762794 G A PDE11A Silent p.I431I 0.31 TCGA-AA-A00N-01 2 179247301 179247301 A G OSBPL6 Intron 0.20 TCGA-AA-A00N-01 2 179396035 179396035 C A TTN Nonsense_Mutation p.E35103* 0.19 TCGA-AA-A00N-01 2 179399680 179399680 A C TTN Missense_Mutation p.L33888V 0.11 TCGA-AA-A00N-01 2 179419732 179419732 G A TTN Missense_Mutation p.A29485V 0.23 TCGA-AA-A00N-01 2 179419780 179419780 G A TTN Missense_Mutation p.A29469V 0.23 TCGA-AA-A00N-01 2 179421826 179421826 A G TTN Missense_Mutation p.V29352A 0.25 TCGA-AA-A00N-01 2 179426261 179426261 G A TTN Missense_Mutation p.L28200F 0.27 TCGA-AA-A00N-01 2 179427833 179427833 C A TTN Nonsense_Mutation p.E27676* 0.22 TCGA-AA-A00N-01 2 179437171 179437171 C A TTN Missense_Mutation p.R24563I 0.18 TCGA-AA-A00N-01 2 179437667 179437667 G A TTN Missense_Mutation p.R24398C 0.19 TCGA-AA-A00N-01 2 179440341 179440341 G T TTN Missense_Mutation p.F23506L 0.20 TCGA-AA-A00N-01 2 179440663 179440663 A C TTN Missense_Mutation p.L23399R 0.27 TCGA-AA-A00N-01 2 179444346 179444346 C A TTN Missense_Mutation p.E22526D 0.19 TCGA-AA-A00N-01 2 179458734 179458734 C A TTN Missense_Mutation p.E19462D 0.23 TCGA-AA-A00N-01 2 179473058 179473058 G A TTN Missense_Mutation p.R17518C 0.09 TCGA-AA-A00N-01 2 179476557 179476557 G A TTN Missense_Mutation p.R16827W 0.37 TCGA-AA-A00N-01 2 179485269 179485269 G A TTN Missense_Mutation p.R15327C 0.15 TCGA-AA-A00N-01 2 179495591 179495591 G T TTN Silent p.I14698I 0.18 TCGA-AA-A00N-01 2 179553471 179553471 C A TTN Missense_Mutation p.K10710N 0.18 TCGA-AA-A00N-01 2 179569256 179569256 G A TTN Silent p.S9981S 0.24 TCGA-AA-A00N-01 2 179571457 179571457 G A TTN Missense_Mutation p.A9715V 0.29 TCGA-AA-A00N-01 2 179575601 179575601 G A TTN Missense_Mutation p.A9408V 0.17 TCGA-AA-A00N-01 2 179579025 179579025 C T TTN Missense_Mutation p.V8826I 0.15 TCGA-AA-A00N-01 2 179579173 179579173 G A TTN Silent p.I8776I 0.41 TCGA-AA-A00N-01 2 179587898 179587898 A G TTN Missense_Mutation p.V7279A 0.21 TCGA-AA-A00N-01 2 179595352 179595352 G A TTN Missense_Mutation p.H5970Y 0.18 TCGA-AA-A00N-01 2 179598244 179598244 T G TTN Missense_Mutation p.E5259A 0.26 TCGA-AA-A00N-01 2 179599611 179599611 T C TTN Missense_Mutation p.T5014A 0.19 TCGA-AA-A00N-01 2 179605566 179605566 G T TTN Missense_Mutation p.L4132I 0.11 TCGA-AA-A00N-01 2 179611474 179611474 C T TTN Intron 0.20 TCGA-AA-A00N-01 2 179612468 179612468 T C TTN Intron 0.17 TCGA-AA-A00N-01 2 179622461 179622461 T C TTN Missense_Mutation p.I3496V 0.22 TCGA-AA-A00N-01 2 179631233 179631233 C T TTN Missense_Mutation p.R3193Q 0.19 TCGA-AA-A00N-01 2 179640347 179640347 C T TTN Missense_Mutation p.E2082K 0.19 TCGA-AA-A00N-01 2 179640738 179640738 T C TTN Silent p.V1951V 0.22 TCGA-AA-A00N-01 2 179645914 179645914 C A TTN Nonsense_Mutation p.E1153* 0.21 TCGA-AA-A00N-01 2 179658178 179658178 C A TTN Nonsense_Mutation p.E497* 0.04 TCGA-AA-A00N-01 2 179669352 179669352 C T TTN Silent p.P6P 0.13 TCGA-AA-A00N-01 2 179702150 179702150 G T CCDC141 Missense_Mutation p.L1266I 0.29 tolerated(0.09) benign(0.045) TCGA-AA-A00N-01 2 179734033 179734033 C T CCDC141 Splice_Site p.X736_splice 0.24 TCGA-AA-A00N-01 2 179742742 179742742 C A CCDC141 Missense_Mutation p.K616N 0.23 deleterious(0) benign(0.069) TCGA-AA-A00N-01 2 179843325 179843325 G T CCDC141 Silent p.V101V 0.28 TCGA-AA-A00N-01 2 179912049 179912050 - T CCDC141 Frame_Shift_Ins p.L63Tfs*4 0.19 TCGA-AA-A00N-01 2 182409488 182409488 C T CERKL Missense_Mutation p.R461Q 0.28 tolerated(0.11) benign(0.195) TCGA-AA-A00N-01 2 183051307 183051307 C T PDE1A Missense_Mutation p.D422N 0.20 deleterious(0.01) possibly_damaging(0.84) TCGA-AA-A00N-01 2 183593608 183593608 G T DNAJC10 Nonsense_Mutation p.E174* 0.24 TCGA-AA-A00N-01 2 183605099 183605099 C T DNAJC10 Missense_Mutation p.S354L 0.19 deleterious(0.04) benign(0.003) TCGA-AA-A00N-01 2 183621077 183621077 A G DNAJC10 Missense_Mutation p.T564A 0.19 tolerated(0.34) benign(0.005) TCGA-AA-A00N-01 2 183790336 183790336 A C NCKAP1 3'UTR 0.31 TCGA-AA-A00N-01 2 183866921 183866921 C T NCKAP1 Missense_Mutation p.R155Q 0.21 deleterious(0.05) probably_damaging(0.939) TCGA-AA-A00N-01 2 183960324 183960324 C T DUSP19 Missense_Mutation p.R198C 0.17 deleterious(0.02) benign(0.022) TCGA-AA-A00N-01 2 185798363 185798363 C T ZNF804A Nonsense_Mutation p.R97* 0.27 TCGA-AA-A00N-01 2 185801033 185801033 G T ZNF804A Missense_Mutation p.D304Y 0.24 deleterious(0) possibly_damaging(0.754) TCGA-AA-A00N-01 2 185802477 185802477 T C ZNF804A Missense_Mutation p.L785S 0.19 tolerated(1) probably_damaging(0.986) TCGA-AA-A00N-01 2 186670788 186670788 T G FSIP2 Missense_Mutation p.H5674Q 0.08 benign(0.007) TCGA-AA-A00N-01 2 186671911 186671911 C T FSIP2 Missense_Mutation p.R6049C 0.20 benign(0.055) TCGA-AA-A00N-01 2 186672895 186672895 T G FSIP2 Missense_Mutation p.L6377V 0.22 probably_damaging(0.998) TCGA-AA-A00N-01 2 187605072 187605072 G T FAM171B Missense_Mutation p.S119I 0.31 tolerated(0.15) possibly_damaging(0.46) TCGA-AA-A00N-01 2 187615999 187615999 G A FAM171B Missense_Mutation p.R288H 0.12 tolerated(0.55) benign(0.001) TCGA-AA-A00N-01 2 187698730 187698730 T C ZSWIM2 Silent p.L257L 0.20 TCGA-AA-A00N-01 2 189910527 189910527 G A COL5A2 Missense_Mutation p.P1103L 0.18 unknown(0) TCGA-AA-A00N-01 2 190329838 190329838 T G WDR75 Missense_Mutation p.Y383D 0.26 tolerated(0.64) benign(0.001) TCGA-AA-A00N-01 2 190426481 190426481 C A SLC40A1 3'UTR 0.42 TCGA-AA-A00N-01 2 190719000 190719000 G A PMS1 Silent p.T334T 0.23 TCGA-AA-A00N-01 2 190738252 190738252 T C PMS1 Missense_Mutation p.I835T 0.06 deleterious(0) probably_damaging(0.954) TCGA-AA-A00N-01 2 196545296 196545296 G A SLC39A10 Missense_Mutation p.R177H 0.19 tolerated(0.87) benign(0.001) TCGA-AA-A00N-01 2 196592995 196592995 T C SLC39A10 Silent p.G753G 0.26 TCGA-AA-A00N-01 2 196640692 196640692 C T DNAH7 Missense_Mutation p.E3694K 0.11 tolerated(0.08) possibly_damaging(0.49) TCGA-AA-A00N-01 2 196877572 196877572 A G DNAH7 Missense_Mutation p.S310P 0.06 tolerated(0.18) benign(0.001) TCGA-AA-A00N-01 2 197066027 197066027 C A HECW2 Nonsense_Mutation p.E1565* 0.17 TCGA-AA-A00N-01 2 197106879 197106879 G A HECW2 Silent p.F1193F 0.19 TCGA-AA-A00N-01 2 197298104 197298104 C T HECW2 Missense_Mutation p.R15Q 0.19 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-AA-A00N-01 2 197673987 197673987 C A C2orf66 Missense_Mutation p.R42I 0.26 deleterious(0) possibly_damaging(0.763) TCGA-AA-A00N-01 2 197943290 197943290 A C ANKRD44 3'UTR 0.24 TCGA-AA-A00N-01 2 198262756 198262756 A C SF3B1 Missense_Mutation p.I1073M 0.30 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 2 198270162 198270162 C T SF3B1 Missense_Mutation p.R425Q 0.27 tolerated(0.06) benign(0.41) TCGA-AA-A00N-01 2 198299764 198299764 G T SF3B1 5'UTR 0.19 TCGA-AA-A00N-01 2 198593242 198593242 G T BOLL 3'UTR 0.17 TCGA-AA-A00N-01 2 198593246 198593246 T C BOLL 3'UTR 0.27 TCGA-AA-A00N-01 2 198949646 198949646 C T PLCL1 Nonsense_Mutation p.R469* 0.21 TCGA-AA-A00N-01 2 198953768 198953768 C T PLCL1 Silent p.L968L 0.15 TCGA-AA-A00N-01 2 199011742 199011742 C T PLCL1 3'UTR 0.31 TCGA-AA-A00N-01 2 20113908 20113908 C A WDR35 Missense_Mutation p.E1095D 0.22 tolerated(0.29) benign(0.006) TCGA-AA-A00N-01 2 201171116 201171116 A G SPATS2L Intron 0.22 TCGA-AA-A00N-01 2 20174261 20174261 C A WDR35 Missense_Mutation p.R235I 0.06 deleterious(0) benign(0.027) TCGA-AA-A00N-01 2 201846224 201846224 A G FAM126B Silent p.S454S 0.23 TCGA-AA-A00N-01 2 20200215 20200215 T A MATN3 Missense_Mutation p.K385N 0.28 tolerated(0.19) benign(0.006) TCGA-AA-A00N-01 2 202263032 202263032 G A TRAK2 Nonsense_Mutation p.R176* 0.33 TCGA-AA-A00N-01 2 202352326 202352326 G A ALS2CR11 3'Flank 0.16 TCGA-AA-A00N-01 2 202603447 202603447 G T ALS2 Missense_Mutation p.S788Y 0.13 tolerated(0.07) possibly_damaging(0.828) TCGA-AA-A00N-01 2 202622227 202622227 C T ALS2 Missense_Mutation p.E457K 0.22 tolerated(0.07) benign(0.161) TCGA-AA-A00N-01 2 202902211 202902211 C T FZD7 3'UTR 0.19 TCGA-AA-A00N-01 2 202902600 202902600 C A FZD7 3'UTR 0.20 TCGA-AA-A00N-01 2 203420898 203420898 A G BMPR2 Missense_Mutation p.N837S 0.18 tolerated(0.9) benign(0) TCGA-AA-A00N-01 2 203972491 203972491 G A NBEAL1 Missense_Mutation p.R481Q 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A00N-01 2 203986990 203986990 C A NBEAL1 Nonsense_Mutation p.S840* 0.15 TCGA-AA-A00N-01 2 204039964 204039964 C T NBEAL1 Missense_Mutation p.R2111C 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 204161239 204161239 T G CYP20A1 Silent p.T397T 0.13 TCGA-AA-A00N-01 2 204305879 204305879 C T RAPH1 Silent p.Q678Q 0.16 TCGA-AA-A00N-01 2 204354452 204354452 A G RAPH1 Missense_Mutation p.V196A 0.16 benign(0.194) TCGA-AA-A00N-01 2 204591381 204591381 G A CD28 Silent p.S26S 0.19 TCGA-AA-A00N-01 2 204599617 204599617 C T CD28 Silent p.F215F 0.22 TCGA-AA-A00N-01 2 206166411 206166411 C T PARD3B Silent p.F810F 0.18 TCGA-AA-A00N-01 2 206991490 206991490 G A NDUFS1 Nonsense_Mutation p.R669* 0.28 TCGA-AA-A00N-01 2 207172324 207172324 G A ZDBF2 Silent p.K1024K 0.18 TCGA-AA-A00N-01 2 207173597 207173597 G A ZDBF2 Missense_Mutation p.V1449I 0.21 tolerated(0.35) benign(0.002) TCGA-AA-A00N-01 2 207174219 207174219 A C ZDBF2 Missense_Mutation p.K1656T 0.25 deleterious(0.04) benign(0.004) TCGA-AA-A00N-01 2 207175899 207175899 G A ZDBF2 Missense_Mutation p.R2216Q 0.22 tolerated(0.72) benign(0.01) TCGA-AA-A00N-01 2 207175936 207175936 G A ZDBF2 Silent p.S2228S 0.21 TCGA-AA-A00N-01 2 207508953 207508953 T G AC010731.4 Intron 0.24 TCGA-AA-A00N-01 2 207509368 207509368 A G AC010731.4 RNA 0.06 TCGA-AA-A00N-01 2 207527989 207527989 G A DYTN Missense_Mutation p.A424V 0.26 deleterious(0.01) benign(0.021) TCGA-AA-A00N-01 2 207636904 207636904 G T FASTKD2 Splice_Site p.X372_splice 0.23 TCGA-AA-A00N-01 2 208461732 208461732 A G CREB1 Missense_Mutation p.I326V 0.19 deleterious(0) benign(0.271) TCGA-AA-A00N-01 2 208477906 208477906 C T METTL21A Missense_Mutation p.R174Q 0.21 deleterious(0.04) probably_damaging(0.934) TCGA-AA-A00N-01 2 20871048 20871048 G A GDF7 Missense_Mutation p.A406T 0.25 deleterious(0.03) probably_damaging(0.989) TCGA-AA-A00N-01 2 20871062 20871062 G A GDF7 Silent p.A410A 0.06 TCGA-AA-A00N-01 2 209007426 209007426 A G CRYGB Missense_Mutation p.F155S 0.18 tolerated(0.09) benign(0.028) TCGA-AA-A00N-01 2 209209849 209209849 G A PIKFYVE Missense_Mutation p.R1681Q 0.18 deleterious(0.02) benign(0.007) TCGA-AA-A00N-01 2 210560639 210560639 C T MAP2 Missense_Mutation p.L1249F 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AA-A00N-01 2 210561349 210561349 C T MAP2 Missense_Mutation p.L1422F 0.24 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 2 210570445 210570445 A G MAP2 Missense_Mutation p.T1576A 0.24 deleterious(0.03) possibly_damaging(0.573) TCGA-AA-A00N-01 2 210574837 210574837 C T MAP2 Silent p.V1644V 0.23 TCGA-AA-A00N-01 2 210642204 210642204 G A UNC80 Missense_Mutation p.R174Q 0.23 possibly_damaging(0.655) TCGA-AA-A00N-01 2 210690695 210690695 C A UNC80 Missense_Mutation p.S799Y 0.18 probably_damaging(0.992) TCGA-AA-A00N-01 2 210742762 210742762 A G UNC80 Missense_Mutation p.T1311A 0.27 benign(0.12) TCGA-AA-A00N-01 2 210787062 210787062 C T UNC80 Missense_Mutation p.R1807C 0.18 probably_damaging(0.996) TCGA-AA-A00N-01 2 210805967 210805967 C T UNC80 Silent p.L2157L 0.20 TCGA-AA-A00N-01 2 210858801 210858801 G T UNC80 Missense_Mutation p.R3108L 0.26 possibly_damaging(0.691) TCGA-AA-A00N-01 2 210880819 210880819 C T RPE Missense_Mutation p.R109W 0.18 deleterious(0.01) benign(0.133) TCGA-AA-A00N-01 2 211019229 211019229 C T KANSL1L Silent p.K26K 0.09 TCGA-AA-A00N-01 2 212251741 212251741 G T ERBB4 Nonsense_Mutation p.C1106* 0.23 TCGA-AA-A00N-01 2 21228133 21228133 G A APOB Silent p.F3869F 0.11 TCGA-AA-A00N-01 2 21229472 21229472 A G APOB Missense_Mutation p.V3423A 0.16 benign(0) TCGA-AA-A00N-01 2 21230014 21230014 G A APOB Silent p.L3242L 0.20 TCGA-AA-A00N-01 2 21230269 21230269 G T APOB Silent p.G3157G 0.19 TCGA-AA-A00N-01 2 21230290 21230290 G T APOB Missense_Mutation p.F3150L 0.23 benign(0.265) TCGA-AA-A00N-01 2 21231443 21231443 G T APOB Missense_Mutation p.S2766Y 0.15 possibly_damaging(0.454) TCGA-AA-A00N-01 2 21234811 21234811 C T APOB Silent p.A1643A 0.15 TCGA-AA-A00N-01 2 21235340 21235340 G A APOB Missense_Mutation p.A1467V 0.17 probably_damaging(0.994) TCGA-AA-A00N-01 2 21235442 21235442 G A APOB Missense_Mutation p.S1433L 0.22 probably_damaging(0.992) TCGA-AA-A00N-01 2 212495220 212495220 C A ERBB4 Missense_Mutation p.K682N 0.17 deleterious(0.03) probably_damaging(0.954) TCGA-AA-A00N-01 2 21255294 21255294 C A APOB Missense_Mutation p.E428D 0.26 probably_damaging(0.994) TCGA-AA-A00N-01 2 213872491 213872491 G A IKZF2 Nonsense_Mutation p.R392* 0.16 TCGA-AA-A00N-01 2 213872790 213872790 A G IKZF2 Missense_Mutation p.F292S 0.24 deleterious(0.02) benign(0.171) TCGA-AA-A00N-01 2 215275035 215275035 C A SPAG16 Missense_Mutation p.S631Y 0.23 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 2 215890460 215890460 A C ABCA12 Silent p.S408S 0.22 TCGA-AA-A00N-01 2 215928835 215928835 C A ABCA12 Missense_Mutation p.D91Y 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A00N-01 2 216177103 216177103 G A ATIC Intron 0.16 TCGA-AA-A00N-01 2 216203539 216203539 G A ATIC Missense_Mutation p.R379Q 0.21 deleterious(0) possibly_damaging(0.583) TCGA-AA-A00N-01 2 216273098 216273098 C T FN1 Missense_Mutation p.R784Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 216288915 216288915 C T FN1 Silent p.S390S 0.18 TCGA-AA-A00N-01 2 216809668 216809668 C T MREG Missense_Mutation p.R188Q 0.18 tolerated(0.46) benign(0.004) TCGA-AA-A00N-01 2 218683357 218683357 C A TNS1 Missense_Mutation p.R1129I 0.09 tolerated(0.39) benign(0.059) TCGA-AA-A00N-01 2 218712883 218712883 C T TNS1 Missense_Mutation p.R661H 0.16 tolerated(0.62) benign(0.001) TCGA-AA-A00N-01 2 218925686 218925686 C T CXCR2P1 RNA 0.13 TCGA-AA-A00N-01 2 218954032 218954032 C T RUFY4 Silent p.C540C 0.21 TCGA-AA-A00N-01 2 219127975 219127975 C T GPBAR1 Silent p.P176P 0.09 TCGA-AA-A00N-01 2 219141755 219141755 A G TMBIM1 Missense_Mutation p.V236A 0.19 deleterious(0.05) benign(0.008) TCGA-AA-A00N-01 2 219257734 219257734 G A SLC11A1 Missense_Mutation p.A399T 0.23 tolerated(0.17) benign(0.047) TCGA-AA-A00N-01 2 219294667 219294667 G A VIL1 Silent p.A315A 0.06 TCGA-AA-A00N-01 2 219508039 219508039 T C ZNF142 Missense_Mutation p.D1067G 0.23 tolerated(0.38) benign(0.006) TCGA-AA-A00N-01 2 219508139 219508139 G T ZNF142 Missense_Mutation p.L1034I 0.18 tolerated(0.24) benign(0.364) TCGA-AA-A00N-01 2 219563458 219563458 C T STK36 Missense_Mutation p.S1064L 0.09 deleterious(0.03) benign(0.102) TCGA-AA-A00N-01 2 219695555 219695555 C A PRKAG3 Missense_Mutation p.R48I 0.21 tolerated_low_confidence(0.09) benign(0.008) TCGA-AA-A00N-01 2 220045401 220045401 C T FAM134A Nonsense_Mutation p.R189* 0.20 TCGA-AA-A00N-01 2 220078657 220078657 G A ABCB6 Missense_Mutation p.S490L 0.07 deleterious(0.01) possibly_damaging(0.803) TCGA-AA-A00N-01 2 220080798 220080798 G A ABCB6 Missense_Mutation p.R359C 0.26 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 2 220101074 220101074 A C ANKZF1 Missense_Mutation p.Q696H 0.21 deleterious(0.01) probably_damaging(0.928) TCGA-AA-A00N-01 2 220111263 220111263 C A STK16 Intron 0.28 TCGA-AA-A00N-01 2 220113190 220113190 A G STK16 Missense_Mutation p.D276G 0.15 deleterious(0.01) possibly_damaging(0.765) TCGA-AA-A00N-01 2 220114931 220114931 A G TUBA4A 3'UTR 0.24 TCGA-AA-A00N-01 2 220135028 220135028 G A TUBA4B RNA 0.28 TCGA-AA-A00N-01 2 220146464 220146464 G A DNAJB2 Missense_Mutation p.R67H 0.21 deleterious(0.02) benign(0.006) TCGA-AA-A00N-01 2 220197451 220197451 G A RESP18 Silent p.V9V 0.18 TCGA-AA-A00N-01 2 220313881 220313881 G T SPEG Missense_Mutation p.E667D 0.17 benign(0.174) TCGA-AA-A00N-01 2 220333406 220333406 C T SPEG Silent p.F1083F 0.24 TCGA-AA-A00N-01 2 220333757 220333757 G A SPEG Missense_Mutation p.A1160T 0.19 benign(0.021) TCGA-AA-A00N-01 2 220431629 220431629 A G OBSL1 Missense_Mutation p.V686A 0.17 tolerated(0.54) benign(0.292) TCGA-AA-A00N-01 2 220505675 220505675 G A SLC4A3 Silent p.E1231E 0.12 TCGA-AA-A00N-01 2 223169352 223169352 C T CCDC140 3'UTR 0.05 TCGA-AA-A00N-01 2 223464680 223464680 C A FARSB Missense_Mutation p.D529Y 0.16 deleterious(0) benign(0.028) TCGA-AA-A00N-01 2 223918932 223918932 G T KCNE4 3'UTR 0.20 TCGA-AA-A00N-01 2 224462203 224462203 C A SCG2 Nonsense_Mutation p.E600* 0.24 TCGA-AA-A00N-01 2 224903223 224903223 G A SERPINE2 5'UTR 0.22 TCGA-AA-A00N-01 2 225338919 225338919 C T CUL3 3'UTR 0.22 TCGA-AA-A00N-01 2 225639752 225639752 G A DOCK10 Silent p.I1961I 0.23 TCGA-AA-A00N-01 2 225652044 225652044 G A DOCK10 Missense_Mutation p.A1830V 0.19 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 2 225672642 225672642 G A DOCK10 Nonsense_Mutation p.R1191* 0.10 TCGA-AA-A00N-01 2 226446722 226446722 C T NYAP2 Nonsense_Mutation p.R197* 0.18 TCGA-AA-A00N-01 2 226447518 226447518 C T NYAP2 Missense_Mutation p.S462L 0.14 tolerated(0.17) benign(0.005) TCGA-AA-A00N-01 2 227663127 227663127 G A IRS1 Missense_Mutation p.L110F 0.07 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 227729345 227729345 G T RHBDD1 5'UTR 0.19 TCGA-AA-A00N-01 2 228012211 228012211 C A COL4A4 5'UTR 0.18 TCGA-AA-A00N-01 2 228102808 228102808 C A COL4A3 Intron 0.21 TCGA-AA-A00N-01 2 228398271 228398271 G T AGFG1 Missense_Mutation p.S298I 0.15 deleterious(0.02) possibly_damaging(0.453) TCGA-AA-A00N-01 2 228882781 228882781 G A SPHKAP Missense_Mutation p.A930V 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 229890292 229890292 C A PID1 3'UTR 0.09 TCGA-AA-A00N-01 2 229890417 229890417 G A PID1 Silent p.S226S 0.17 TCGA-AA-A00N-01 2 230341869 230341869 G A DNER Silent p.C416C 0.21 TCGA-AA-A00N-01 2 230341955 230341955 G A DNER Missense_Mutation p.L388F 0.25 tolerated(0.43) benign(0.048) TCGA-AA-A00N-01 2 230723710 230723710 C A TRIP12 Missense_Mutation p.D227Y 0.30 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-AA-A00N-01 2 231134263 231134263 A T SP140 Missense_Mutation p.E419D 0.17 deleterious(0.02) benign(0.272) TCGA-AA-A00N-01 2 231379830 231379830 C T SP100 Intron 0.10 TCGA-AA-A00N-01 2 231379859 231379859 T G SP100 Intron 0.26 TCGA-AA-A00N-01 2 232326593 232326593 C T NCL Missense_Mutation p.A91T 0.21 unknown(0) TCGA-AA-A00N-01 2 232574610 232574610 A G PTMA Intron 0.40 TCGA-AA-A00N-01 2 232952349 232952349 C T DIS3L2 Silent p.S173S 0.25 TCGA-AA-A00N-01 2 232975914 232975914 A C DIS3L2 Intron 0.18 TCGA-AA-A00N-01 2 233393337 233393337 C T CHRND Silent p.F160F 0.06 TCGA-AA-A00N-01 2 233393572 233393572 T C CHRND Silent p.S170S 0.18 TCGA-AA-A00N-01 2 233415141 233415141 T G EIF4E2 5'UTR 0.26 TCGA-AA-A00N-01 2 233756166 233756166 C T NGEF Missense_Mutation p.A392T 0.22 tolerated(0.21) benign(0.015) TCGA-AA-A00N-01 2 234078674 234078674 G A INPP5D Missense_Mutation p.R540Q 0.19 deleterious(0) probably_damaging(0.927) TCGA-AA-A00N-01 2 234079167 234079167 T C INPP5D Missense_Mutation p.I594T 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 234079180 234079180 G A INPP5D Silent p.Q598Q 0.25 TCGA-AA-A00N-01 2 234189798 234189798 A G ATG16L1 Missense_Mutation p.T370A 0.25 deleterious(0.04) benign(0.33) TCGA-AA-A00N-01 2 234198983 234198983 C T ATG16L1 Missense_Mutation p.R472C 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 2 234420362 234420362 G A USP40 Missense_Mutation p.S851L 0.19 deleterious(0.01) possibly_damaging(0.477) TCGA-AA-A00N-01 2 234429742 234429742 C A USP40 Missense_Mutation p.E751D 0.14 tolerated(0.25) benign(0.003) TCGA-AA-A00N-01 2 234591344 234591344 G A UGT1A7 Missense_Mutation p.R254Q 0.25 deleterious(0.01) possibly_damaging(0.861) TCGA-AA-A00N-01 2 234637983 234637983 G T UGT1A3 Nonsense_Mutation p.E71* 0.19 TCGA-AA-A00N-01 2 234835191 234835191 T C TRPM8 Silent p.F3F 0.33 TCGA-AA-A00N-01 2 234847746 234847746 C T TRPM8 Silent p.G151G 0.18 TCGA-AA-A00N-01 2 234869596 234869596 G T TRPM8 Missense_Mutation p.K513N 0.26 tolerated(0.31) possibly_damaging(0.677) TCGA-AA-A00N-01 2 235951000 235951000 C T SH3BP4 Silent p.F529F 0.29 TCGA-AA-A00N-01 2 236653425 236653425 T C AGAP1 Silent p.S160S 0.05 TCGA-AA-A00N-01 2 236792017 236792017 C T AGAP1 Missense_Mutation p.S360L 0.21 deleterious(0) possibly_damaging(0.82) TCGA-AA-A00N-01 2 238244922 238244922 C T COL6A3 Missense_Mutation p.A2941T 0.22 unknown(0) TCGA-AA-A00N-01 2 238266486 238266486 C T COL6A3 Missense_Mutation p.G2171R 0.22 probably_damaging(0.993) TCGA-AA-A00N-01 2 238267699 238267699 C A COL6A3 Missense_Mutation p.E2129D 0.06 benign(0.079) TCGA-AA-A00N-01 2 238285681 238285681 C T COL6A3 Missense_Mutation p.R935Q 0.25 probably_damaging(1) TCGA-AA-A00N-01 2 238296822 238296822 C A COL6A3 Missense_Mutation p.D239Y 0.22 probably_damaging(0.947) TCGA-AA-A00N-01 2 238668804 238668804 A C LRRFIP1 Missense_Mutation p.K282T 0.20 deleterious(0.01) possibly_damaging(0.854) TCGA-AA-A00N-01 2 238726580 238726580 G T RBM44 Missense_Mutation p.D341Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 2 238728939 238728939 C T RBM44 Missense_Mutation p.R621C 0.16 deleterious(0) probably_damaging(0.972) TCGA-AA-A00N-01 2 238728976 238728976 A C RBM44 Missense_Mutation p.N633T 0.23 deleterious(0.03) possibly_damaging(0.713) TCGA-AA-A00N-01 2 238737912 238737912 G T RBM44 Nonsense_Mutation p.E886* 0.08 TCGA-AA-A00N-01 2 239079254 239079254 T G ILKAP Missense_Mutation p.N368H 0.26 tolerated(0.11) benign(0.275) TCGA-AA-A00N-01 2 239233994 239233994 G T TRAF3IP1 Missense_Mutation p.E57D 0.08 deleterious(0) benign(0.315) TCGA-AA-A00N-01 2 240500250 240500250 G A AC079612.1 Missense_Mutation p.R44Q 0.19 benign(0.417) TCGA-AA-A00N-01 2 240969308 240969308 T C OR6B2 Missense_Mutation p.D180G 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 240969664 240969664 G A OR6B2 Silent p.Y61Y 0.07 TCGA-AA-A00N-01 2 240984805 240984805 G A OR6B3 Missense_Mutation p.P229S 0.27 tolerated(0.06) possibly_damaging(0.859) TCGA-AA-A00N-01 2 240985205 240985205 G A OR6B3 Silent p.V95V 0.18 TCGA-AA-A00N-01 2 240985307 240985307 G A OR6B3 Silent p.Y61Y 0.24 TCGA-AA-A00N-01 2 241389464 241389464 C A AC110619.2 Intron 0.33 TCGA-AA-A00N-01 2 241555807 241555807 C T GPR35 Intron 0.15 TCGA-AA-A00N-01 2 241658546 241658546 G A KIF1A Silent p.F1697F 0.27 TCGA-AA-A00N-01 2 241992731 241992731 C T SNED1 Missense_Mutation p.P749S 0.20 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A00N-01 2 242066465 242066465 C T PASK Missense_Mutation p.R622Q 0.18 tolerated(0.59) benign(0.001) TCGA-AA-A00N-01 2 242122214 242122214 C T PPP1R7 Silent p.I353I 0.29 TCGA-AA-A00N-01 2 242192903 242192903 C T HDLBP Missense_Mutation p.E400K 0.20 deleterious(0.01) possibly_damaging(0.745) TCGA-AA-A00N-01 2 242343251 242343251 C T FARP2 Silent p.C64C 0.17 TCGA-AA-A00N-01 2 24244579 24244579 T G MFSD2B Nonsense_Mutation p.L248* 0.06 TCGA-AA-A00N-01 2 242814439 242814439 C T CXXC11 Silent p.G244G 0.27 TCGA-AA-A00N-01 2 24521661 24521661 C T ITSN2 Missense_Mutation p.R456Q 0.26 deleterious(0.01) unknown(0) TCGA-AA-A00N-01 2 24927991 24927991 G A NCOA1 Missense_Mutation p.R329K 0.18 deleterious(0.03) benign(0.025) TCGA-AA-A00N-01 2 25016148 25016148 C A PTRHD1 Missense_Mutation p.K33N 0.16 tolerated(0.2) possibly_damaging(0.724) TCGA-AA-A00N-01 2 25186307 25186307 G T DNAJC27 Silent p.I69I 0.17 TCGA-AA-A00N-01 2 25344664 25344664 G A EFR3B Splice_Site p.X162_splice 0.16 TCGA-AA-A00N-01 2 25990516 25990516 T G ASXL2 Missense_Mutation p.K237N 0.14 deleterious(0.01) possibly_damaging(0.77) TCGA-AA-A00N-01 2 26411098 26411098 T C GAREML Missense_Mutation p.F866S 0.29 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 2 26534265 26534265 G A GPR113 Silent p.G777G 0.27 TCGA-AA-A00N-01 2 26609333 26609333 G A EPT1 Missense_Mutation p.V342I 0.21 tolerated(0.63) benign(0.001) TCGA-AA-A00N-01 2 26644166 26644166 A C DRC1 Missense_Mutation p.K85T 0.21 deleterious(0) probably_damaging(0.927) TCGA-AA-A00N-01 2 26671587 26671587 G A DRC1 Silent p.A475A 0.27 TCGA-AA-A00N-01 2 26673507 26673507 C A DRC1 Missense_Mutation p.F549L 0.11 deleterious(0.02) benign(0.266) TCGA-AA-A00N-01 2 26684627 26684627 T C OTOF Missense_Mutation p.I1824V 0.20 tolerated(0.17) possibly_damaging(0.524) TCGA-AA-A00N-01 2 27001097 27001097 C T SLC35F6 Silent p.F278F 0.09 TCGA-AA-A00N-01 2 27293076 27293076 C A AGBL5 Missense_Mutation p.P869H 0.18 tolerated_low_confidence(0.29) benign(0) TCGA-AA-A00N-01 2 27360064 27360064 T C C2orf53 Silent p.P378P 0.14 TCGA-AA-A00N-01 2 27361361 27361361 C T C2orf53 5'UTR 0.19 TCGA-AA-A00N-01 2 27549380 27549380 C T GTF3C2 3'UTR 0.26 TCGA-AA-A00N-01 2 27593075 27593075 C T EIF2B4 5'Flank 0.35 TCGA-AA-A00N-01 2 27670442 27670442 C T IFT172 Silent p.T1533T 0.07 TCGA-AA-A00N-01 2 27681692 27681692 G A IFT172 Missense_Mutation p.A944V 0.14 deleterious(0.03) probably_damaging(0.927) TCGA-AA-A00N-01 2 27702995 27702995 G A IFT172 Silent p.I269I 0.29 TCGA-AA-A00N-01 2 27839182 27839182 T G ZNF512 Silent p.S429S 0.16 TCGA-AA-A00N-01 2 27873033 27873033 C T GPN1 Missense_Mutation p.S378L 0.18 tolerated(0.15) benign(0.075) TCGA-AA-A00N-01 2 29135495 29135495 T C WDR43 Silent p.C175C 0.26 TCGA-AA-A00N-01 2 29356672 29356672 G A CLIP4 Silent p.S173S 0.23 TCGA-AA-A00N-01 2 29397248 29397248 G T CLIP4 Missense_Mutation p.R578I 0.24 tolerated(0.06) benign(0.374) TCGA-AA-A00N-01 2 29416634 29416634 G A ALK Missense_Mutation p.A1440V 0.33 tolerated(0.27) benign(0.002) TCGA-AA-A00N-01 2 29497976 29497976 A C ALK Missense_Mutation p.F677C 0.16 tolerated(0.13) possibly_damaging(0.784) TCGA-AA-A00N-01 2 30975973 30975973 C T CAPN13 Missense_Mutation p.E345K 0.18 tolerated(0.42) benign(0.052) TCGA-AA-A00N-01 2 31178795 31178795 C T GALNT14 Missense_Mutation p.R177H 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 31348075 31348075 C T GALNT14 Silent p.A58A 0.29 TCGA-AA-A00N-01 2 31428111 31428111 C T CAPN14 Missense_Mutation p.R68H 0.13 tolerated(0.5) benign(0.007) TCGA-AA-A00N-01 2 31489265 31489265 G A EHD3 Missense_Mutation p.D435N 0.24 tolerated(0.25) benign(0.321) TCGA-AA-A00N-01 2 31489304 31489304 T C EHD3 Missense_Mutation p.Y448H 0.18 deleterious(0.03) probably_damaging(0.924) TCGA-AA-A00N-01 2 31567585 31567585 C T XDH Missense_Mutation p.M1123I 0.20 tolerated(0.42) benign(0.016) TCGA-AA-A00N-01 2 31606641 31606641 G A XDH Missense_Mutation p.S289L 0.23 tolerated(0.54) benign(0.005) TCGA-AA-A00N-01 2 32254804 32254804 C T DPY30 Missense_Mutation p.R29K 0.05 tolerated(0.88) benign(0.004) TCGA-AA-A00N-01 2 32445306 32445306 C T SLC30A6 Nonsense_Mutation p.R344* 0.20 TCGA-AA-A00N-01 2 32605222 32605222 C G BIRC6 Missense_Mutation p.A170G 0.14 probably_damaging(0.985) TCGA-AA-A00N-01 2 32617220 32617220 T C BIRC6 Splice_Site p.X317_splice 0.27 TCGA-AA-A00N-01 2 32701385 32701385 A C BIRC6 Missense_Mutation p.Q2275H 0.05 probably_damaging(0.986) TCGA-AA-A00N-01 2 32756604 32756604 G T BIRC6 Nonsense_Mutation p.E4093* 0.18 TCGA-AA-A00N-01 2 32832625 32832625 G A BIRC6 Missense_Mutation p.R4725Q 0.24 possibly_damaging(0.682) TCGA-AA-A00N-01 2 33036136 33036136 C T TTC27 Nonsense_Mutation p.R682* 0.29 TCGA-AA-A00N-01 2 33518289 33518289 T G LTBP1 Missense_Mutation p.S1059A 0.21 deleterious(0.03) benign(0.097) TCGA-AA-A00N-01 2 33622348 33622348 C T LTBP1 Silent p.V1661V 0.22 TCGA-AA-A00N-01 2 33745024 33745024 G A RASGRP3 Missense_Mutation p.R60Q 0.30 tolerated(0.85) benign(0.005) TCGA-AA-A00N-01 2 3660962 3660962 G T COLEC11 Silent p.T78T 0.23 TCGA-AA-A00N-01 2 36691680 36691680 C T CRIM1 Silent p.C291C 0.18 TCGA-AA-A00N-01 2 36808434 36808434 C A FEZ2 Missense_Mutation p.E211D 0.16 tolerated(0.33) benign(0.012) TCGA-AA-A00N-01 2 37032583 37032583 C T VIT Missense_Mutation p.R389W 0.25 deleterious(0) probably_damaging(0.982) TCGA-AA-A00N-01 2 37032714 37032714 G A VIT Silent p.A432A 0.18 TCGA-AA-A00N-01 2 3727512 3727512 G A ALLC Missense_Mutation p.D76N 0.20 tolerated(0.07) probably_damaging(0.929) TCGA-AA-A00N-01 2 37316836 37316836 G A GPATCH11 Missense_Mutation p.R34Q 0.18 tolerated(0.52) benign(0) TCGA-AA-A00N-01 2 37376119 37376119 C A EIF2AK2 5'UTR 0.20 TCGA-AA-A00N-01 2 3744995 3744995 G A ALLC Missense_Mutation p.A267T 0.22 deleterious(0.01) possibly_damaging(0.868) TCGA-AA-A00N-01 2 37543699 37543699 C T PRKD3 5'UTR 0.21 TCGA-AA-A00N-01 2 38202438 38202438 G T RMDN2 Missense_Mutation p.K415N 0.23 deleterious(0) probably_damaging(0.969) TCGA-AA-A00N-01 2 38893323 38893323 C T GALM Missense_Mutation p.A7V 0.18 tolerated(0.11) benign(0.005) TCGA-AA-A00N-01 2 38975205 38975205 C T SRSF7 Missense_Mutation p.G186R 0.15 tolerated_low_confidence(0.08) unknown(0) TCGA-AA-A00N-01 2 39517458 39517458 T G MAP4K3 Missense_Mutation p.K430T 0.28 tolerated(0.59) possibly_damaging(0.587) TCGA-AA-A00N-01 2 39995593 39995593 T C THUMPD2 Missense_Mutation p.K241E 0.26 deleterious(0.02) possibly_damaging(0.507) TCGA-AA-A00N-01 2 43921627 43921627 G T PLEKHH2 Nonsense_Mutation p.E132* 0.18 TCGA-AA-A00N-01 2 44021663 44021663 C A DYNC2LI1 Missense_Mutation p.L130I 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-AA-A00N-01 2 44078854 44078854 C T ABCG8 Missense_Mutation p.R152C 0.07 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 2 46739210 46739210 G A ATP6V1E2 Missense_Mutation p.A214V 0.31 tolerated(0.1) benign(0.033) TCGA-AA-A00N-01 2 46808649 46808649 T G PIGF Missense_Mutation p.N210H 0.04 tolerated(0.59) benign(0.005) TCGA-AA-A00N-01 2 46986986 46986986 C T SOCS5 Silent p.F439F 0.19 TCGA-AA-A00N-01 2 47387913 47387913 C A CALM2 3'UTR 0.23 TCGA-AA-A00N-01 2 47698180 47698180 G T MSH2 Nonsense_Mutation p.E580* 0.19 TCGA-AA-A00N-01 2 48023129 48023129 A C MSH6 Missense_Mutation p.K185T 0.20 tolerated(0.56) possibly_damaging(0.471) TCGA-AA-A00N-01 2 48027958 48027958 G T MSH6 Nonsense_Mutation p.E946* 0.21 TCGA-AA-A00N-01 2 48030773 48030773 T C MSH6 Silent p.C1129C 0.21 TCGA-AA-A00N-01 2 48873632 48873632 G A STON1-GTF2A1L Silent p.E847E 0.05 TCGA-AA-A00N-01 2 48906481 48906481 G A STON1-GTF2A1L Missense_Mutation p.R1150Q 0.21 deleterious(0) possibly_damaging(0.53) TCGA-AA-A00N-01 2 49190190 49190190 G T FSHR Missense_Mutation p.F590L 0.19 deleterious(0.01) possibly_damaging(0.59) TCGA-AA-A00N-01 2 50779755 50779755 G T NRXN1 Missense_Mutation p.H617N 0.16 tolerated(0.1) benign(0.053) TCGA-AA-A00N-01 2 50850606 50850606 G A NRXN1 Missense_Mutation p.S360L 0.23 deleterious(0.01) possibly_damaging(0.7) TCGA-AA-A00N-01 2 54482291 54482291 C T TSPYL6 Missense_Mutation p.G333D 0.21 deleterious(0.02) possibly_damaging(0.773) TCGA-AA-A00N-01 2 54858671 54858671 A C SPTBN1 Missense_Mutation p.N1163H 0.15 tolerated(0.47) benign(0.005) TCGA-AA-A00N-01 2 54891627 54891627 G A SPTBN1 Missense_Mutation p.G2153D 0.20 tolerated(0.24) benign(0.33) TCGA-AA-A00N-01 2 55043997 55043997 C T EML6 Missense_Mutation p.A144V 0.30 deleterious(0) probably_damaging(0.909) TCGA-AA-A00N-01 2 55197424 55197424 G A EML6 3'UTR 0.29 TCGA-AA-A00N-01 2 56144875 56144875 G A EFEMP1 Missense_Mutation p.R148C 0.27 tolerated(0.17) possibly_damaging(0.818) TCGA-AA-A00N-01 2 56216127 56216127 G T MIR216A RNA 0.19 TCGA-AA-A00N-01 2 5834055 5834055 C T SOX11 Missense_Mutation p.S401L 0.27 tolerated(0.18) probably_damaging(0.953) TCGA-AA-A00N-01 2 5835425 5835425 G T SOX11 3'UTR 0.19 TCGA-AA-A00N-01 2 5837977 5837977 G A SOX11 3'UTR 0.27 TCGA-AA-A00N-01 2 58386638 58386638 G A VRK2 Missense_Mutation p.R446K 0.17 tolerated(0.14) benign(0.012) TCGA-AA-A00N-01 2 5838888 5838888 A C SOX11 3'UTR 0.22 TCGA-AA-A00N-01 2 5839975 5839975 G T SOX11 3'UTR 0.12 TCGA-AA-A00N-01 2 5840322 5840322 T A SOX11 3'UTR 0.21 TCGA-AA-A00N-01 2 61175254 61175254 G A PUS10 Missense_Mutation p.R459C 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 61258969 61258969 C T PEX13 Nonsense_Mutation p.R170* 0.06 TCGA-AA-A00N-01 2 61275972 61275972 G T PEX13 3'UTR 0.34 TCGA-AA-A00N-01 2 61528148 61528148 A C USP34 Missense_Mutation p.L1356V 0.39 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 2 61546367 61546367 G A USP34 Nonsense_Mutation p.R1037* 0.25 TCGA-AA-A00N-01 2 62449455 62449455 G T B3GNT2 Nonsense_Mutation p.E34* 0.30 TCGA-AA-A00N-01 2 62449512 62449512 A G B3GNT2 Missense_Mutation p.T53A 0.20 tolerated(0.83) benign(0) TCGA-AA-A00N-01 2 64112917 64112917 C T UGP2 Missense_Mutation p.A257V 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 2 64202201 64202201 A T VPS54 Intron 0.29 TCGA-AA-A00N-01 2 66691322 66691322 T C MEIS1 Missense_Mutation p.S238P 0.36 deleterious(0.04) benign(0.103) TCGA-AA-A00N-01 2 67626311 67626311 A C ETAA1 Missense_Mutation p.E78D 0.22 deleterious(0.01) probably_damaging(0.949) TCGA-AA-A00N-01 2 68385203 68385203 G A PNO1 Missense_Mutation p.R46H 0.31 tolerated(0.18) benign(0.001) TCGA-AA-A00N-01 2 68622935 68622935 G A PLEK Missense_Mutation p.R347Q 0.37 tolerated(0.06) possibly_damaging(0.496) TCGA-AA-A00N-01 2 69002543 69002543 G A ARHGAP25 Silent p.T84T 0.16 TCGA-AA-A00N-01 2 69585595 69585595 C T GFPT1 Missense_Mutation p.E137K 0.18 tolerated(0.69) benign(0.141) TCGA-AA-A00N-01 2 69646685 69646685 G T NFU1 Missense_Mutation p.F118L 0.27 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 2 70188110 70188110 C T ASPRV1 Silent p.Q237Q 0.30 TCGA-AA-A00N-01 2 70315975 70315975 T C PCBP1 3'UTR 0.05 TCGA-AA-A00N-01 2 70502210 70502210 A C PCYOX1 Missense_Mutation p.K205T 0.26 tolerated(0.08) probably_damaging(0.969) TCGA-AA-A00N-01 2 70903838 70903838 G A ADD2 Intron 0.29 TCGA-AA-A00N-01 2 71043689 71043689 C A CLEC4F Missense_Mutation p.R275I 0.06 deleterious(0.01) probably_damaging(0.935) TCGA-AA-A00N-01 2 71044073 71044073 G A CLEC4F Missense_Mutation p.A147V 0.26 tolerated(0.15) benign(0.105) TCGA-AA-A00N-01 2 71795342 71795342 G A DYSF Missense_Mutation p.G913D 0.13 deleterious(0) probably_damaging(0.948) TCGA-AA-A00N-01 2 71896869 71896869 C T DYSF Missense_Mutation p.A1926V 0.25 deleterious(0.03) benign(0.038) TCGA-AA-A00N-01 2 72360280 72360280 C T CYP26B1 Missense_Mutation p.E340K 0.17 tolerated(0.13) benign(0.322) TCGA-AA-A00N-01 2 73455649 73455649 G T PRADC1 Missense_Mutation p.S167Y 0.13 deleterious(0) possibly_damaging(0.862) TCGA-AA-A00N-01 2 73677023 73677023 T G ALMS1 Missense_Mutation p.I1122M 0.25 possibly_damaging(0.73) TCGA-AA-A00N-01 2 73677629 73677629 G T ALMS1 Silent p.V1324V 0.25 TCGA-AA-A00N-01 2 74392328 74392328 C T MOB1A Intron 0.30 TCGA-AA-A00N-01 2 74452100 74452100 C T SLC4A5 Missense_Mutation p.R1054Q 0.21 deleterious(0.01) benign(0.423) TCGA-AA-A00N-01 2 74482961 74482961 G A SLC4A5 Silent p.F322F 0.27 TCGA-AA-A00N-01 2 74588598 74588598 C T DCTN1 3'UTR 0.28 TCGA-AA-A00N-01 2 74733874 74733874 G A PCGF1 Missense_Mutation p.P113S 0.07 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 2 74808904 74808904 G T M1AP Missense_Mutation p.F222L 0.17 tolerated(0.55) possibly_damaging(0.861) TCGA-AA-A00N-01 2 75347720 75347720 C T TACR1 Silent p.P188P 0.12 TCGA-AA-A00N-01 2 75347750 75347750 G A TACR1 Silent p.V178V 0.27 TCGA-AA-A00N-01 2 75426064 75426064 G A TACR1 5'UTR 0.28 TCGA-AA-A00N-01 2 77746414 77746414 C T LRRTM4 Missense_Mutation p.R194Q 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-AA-A00N-01 2 85046473 85046473 C T DNAH6 Missense_Mutation p.R4140W 0.07 deleterious(0.01) possibly_damaging(0.773) TCGA-AA-A00N-01 2 85576568 85576568 G A RETSAT Silent p.G312G 0.25 TCGA-AA-A00N-01 2 85662808 85662808 G A SH2D6 Missense_Mutation p.R91H 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 2 85781312 85781312 G T GGCX Missense_Mutation p.F281L 0.30 tolerated(0.72) benign(0.003) TCGA-AA-A00N-01 2 85868177 85868177 A C USP39 Missense_Mutation p.K455Q 0.24 deleterious(0.04) probably_damaging(0.98) TCGA-AA-A00N-01 2 86439360 86439360 G A MRPL35 3'UTR 0.18 TCGA-AA-A00N-01 2 87073853 87073853 G A CD8B Silent p.G179G 0.04 TCGA-AA-A00N-01 2 88422580 88422580 C A FABP1 Missense_Mutation p.R126I 0.23 deleterious(0) probably_damaging(0.97) TCGA-AA-A00N-01 2 88422639 88422639 G T FABP1 Intron 0.06 TCGA-AA-A00N-01 2 89035244 89035244 G A RPIA Missense_Mutation p.A196T 0.25 deleterious(0) probably_damaging(0.975) TCGA-AA-A00N-01 2 90193190 90193190 C A IGKV1D-13 Missense_Mutation p.D39E 0.14 tolerated(0.5) benign(0.433) TCGA-AA-A00N-01 2 90249374 90249374 T C IGKV1D-43 Silent p.C110C 0.19 TCGA-AA-A00N-01 2 90260240 90260240 A G IGKV1D-8 Missense_Mutation p.S115G 0.19 deleterious(0.04) benign(0.03) TCGA-AA-A00N-01 2 9558819 9558819 C T ITGB1BP1 Missense_Mutation p.R3H 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-A00N-01 2 95774015 95774015 C T MRPS5 Missense_Mutation p.R181Q 0.18 tolerated(0.09) benign(0.207) TCGA-AA-A00N-01 2 95775699 95775699 T G MRPS5 Missense_Mutation p.K122T 0.21 tolerated(0.6) benign(0.007) TCGA-AA-A00N-01 2 95847338 95847338 G T ZNF2 Missense_Mutation p.E255D 0.30 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 2 9666292 9666292 C T ADAM17 Missense_Mutation p.R234H 0.25 deleterious(0) probably_damaging(0.953) TCGA-AA-A00N-01 2 96688757 96688757 C T GPAT2 Missense_Mutation p.E722K 0.20 tolerated(0.05) benign(0.261) TCGA-AA-A00N-01 2 96957512 96957512 G A SNRNP200 Nonsense_Mutation p.R763* 0.31 TCGA-AA-A00N-01 2 97007521 97007521 A C NCAPH Missense_Mutation p.D54A 0.14 tolerated(0.23) benign(0.144) TCGA-AA-A00N-01 2 97268014 97268014 C A KANSL3 Missense_Mutation p.S774I 0.07 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-AA-A00N-01 2 9731565 9731565 T C YWHAQ Missense_Mutation p.Y125C 0.10 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AA-A00N-01 2 97370483 97370483 T G LMAN2L 3'Flank 0.26 TCGA-AA-A00N-01 2 97779671 97779671 A G ANKRD36 Silent p.E65E 0.07 TCGA-AA-A00N-01 2 97884817 97884817 T C ANKRD36 Splice_Site p.X1294_splice 0.19 TCGA-AA-A00N-01 2 98451301 98451301 T G TMEM131 Missense_Mutation p.K298Q 0.06 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 2 98750294 98750294 G A VWA3B Missense_Mutation p.A294T 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A00N-01 2 98907012 98907012 A C VWA3B Missense_Mutation p.K1028N 0.28 deleterious(0.01) possibly_damaging(0.873) TCGA-AA-A00N-01 2 99725890 99725890 T G TSGA10 Silent p.R5R 0.18 TCGA-AA-A00N-01 2 99858878 99858878 G A LYG2 Silent p.F196F 0.25 TCGA-AA-A00N-01 2 99939086 99939086 T C TXNDC9 Intron 0.28 TCGA-AA-A00N-01 3 100002609 100002609 G A TBC1D23 Missense_Mutation p.D144N 0.21 deleterious(0.03) possibly_damaging(0.809) TCGA-AA-A00N-01 3 10005795 10005795 G A EMC3 Silent p.F248F 0.20 TCGA-AA-A00N-01 3 100287728 100287728 T C TMEM45A Silent p.N217N 0.20 TCGA-AA-A00N-01 3 100362473 100362473 G A GPR128 Silent p.T314T 0.22 TCGA-AA-A00N-01 3 100413668 100413668 G A GPR128 Silent p.S739S 0.14 TCGA-AA-A00N-01 3 100497220 100497220 C A ABI3BP Missense_Mutation p.G703V 0.23 tolerated(0.07) benign(0.12) TCGA-AA-A00N-01 3 100581170 100581170 G A ABI3BP Silent p.L382L 0.30 TCGA-AA-A00N-01 3 101051652 101051652 A C SENP7 Missense_Mutation p.I845M 0.22 deleterious(0) probably_damaging(0.977) TCGA-AA-A00N-01 3 10133904 10133904 C T FANCD2 Nonsense_Mutation p.R1273* 0.11 TCGA-AA-A00N-01 3 10146216 10146216 C T FANCD2OS Silent p.T81T 0.17 TCGA-AA-A00N-01 3 101540681 101540681 C T NXPE3 Silent p.V521V 0.26 TCGA-AA-A00N-01 3 101571051 101571051 G A NFKBIZ Missense_Mutation p.A138T 0.12 tolerated_low_confidence(0.13) benign(0.003) TCGA-AA-A00N-01 3 102183077 102183077 G A ZPLD1 Missense_Mutation p.R264Q 0.23 tolerated(0.27) benign(0.329) TCGA-AA-A00N-01 3 10290888 10290888 G A TATDN2 Missense_Mutation p.A2T 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A00N-01 3 10342675 10342675 A C SEC13 3'UTR 0.29 TCGA-AA-A00N-01 3 10370505 10370505 G A ATP2B2 Missense_Mutation p.S1242L 0.25 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-AA-A00N-01 3 105377967 105377967 G A CBLB Silent p.V932V 0.22 TCGA-AA-A00N-01 3 105459450 105459450 G A CBLB Nonsense_Mutation p.R291* 0.19 TCGA-AA-A00N-01 3 107491685 107491685 T G BBX Missense_Mutation p.F373V 0.21 tolerated(0.66) benign(0.001) TCGA-AA-A00N-01 3 107925522 107925522 C A IFT57 Nonsense_Mutation p.E203* 0.19 TCGA-AA-A00N-01 3 108301888 108301888 T G KIAA1524 Missense_Mutation p.N98T 0.08 deleterious(0) possibly_damaging(0.571) TCGA-AA-A00N-01 3 10861174 10861174 T C SLC6A11 Missense_Mutation p.V94A 0.17 deleterious(0.01) possibly_damaging(0.454) TCGA-AA-A00N-01 3 108672412 108672412 C T GUCA1C Silent p.T66T 0.20 TCGA-AA-A00N-01 3 10916740 10916740 T G SLC6A11 Missense_Mutation p.F284C 0.16 deleterious(0) probably_damaging(0.937) TCGA-AA-A00N-01 3 111313446 111313446 T G ZBED2 5'UTR 0.24 TCGA-AA-A00N-01 3 111564781 111564781 C T PLCXD2 3'UTR 0.25 TCGA-AA-A00N-01 3 111564828 111564828 C A PLCXD2 3'UTR 0.28 TCGA-AA-A00N-01 3 111688631 111688631 A G PHLDB2 Missense_Mutation p.Y1137C 0.17 deleterious(0.01) possibly_damaging(0.566) TCGA-AA-A00N-01 3 111705829 111705829 C T ABHD10 Silent p.V169V 0.24 TCGA-AA-A00N-01 3 112357465 112357465 T C CCDC80 Missense_Mutation p.T430A 0.05 tolerated(0.2) possibly_damaging(0.62) TCGA-AA-A00N-01 3 112357829 112357829 G A CCDC80 Silent p.S308S 0.23 TCGA-AA-A00N-01 3 112647943 112647943 C T CD200R1 Intron 0.24 TCGA-AA-A00N-01 3 112992134 112992134 G A BOC Missense_Mutation p.E394K 0.18 tolerated(0.06) probably_damaging(0.992) TCGA-AA-A00N-01 3 113138965 113138965 C T WDR52 Missense_Mutation p.A157T 0.22 deleterious(0.01) benign(0.029) TCGA-AA-A00N-01 3 113375527 113375527 A C KIAA2018 Missense_Mutation p.Y1668D 0.09 probably_damaging(0.999) TCGA-AA-A00N-01 3 113955568 113955568 C T ZNF80 Silent p.S118S 0.10 TCGA-AA-A00N-01 3 113955908 113955908 C T ZNF80 Missense_Mutation p.R5H 0.26 tolerated(1) benign(0.001) TCGA-AA-A00N-01 3 118865501 118865501 G T C3orf30 Missense_Mutation p.E155D 0.17 tolerated(0.62) probably_damaging(0.953) TCGA-AA-A00N-01 3 119886361 119886361 G A GPR156 Nonsense_Mutation p.R655* 0.08 TCGA-AA-A00N-01 3 120053952 120053952 T G LRRC58 Missense_Mutation p.N222H 0.16 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 3 120320000 120320000 A C NDUFB4 Missense_Mutation p.N75H 0.26 tolerated(0.11) probably_damaging(0.964) TCGA-AA-A00N-01 3 120347171 120347171 G T HGD 3'UTR 0.11 TCGA-AA-A00N-01 3 120389331 120389331 G T HGD Silent p.S75S 0.17 TCGA-AA-A00N-01 3 120469662 120469662 G A GTF2E1 Missense_Mutation p.R88H 0.18 deleterious(0) benign(0.209) TCGA-AA-A00N-01 3 120469737 120469737 G T GTF2E1 Missense_Mutation p.R113I 0.07 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 3 120673845 120673845 A C STXBP5L Missense_Mutation p.K83T 0.12 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 3 120673886 120673886 T C STXBP5L Splice_Site p.X96_splice 0.14 TCGA-AA-A00N-01 3 121134764 121134764 C T STXBP5L Missense_Mutation p.L1083F 0.29 tolerated(1) probably_damaging(0.999) TCGA-AA-A00N-01 3 121340972 121340972 A C FBXO40 Silent p.T232T 0.17 TCGA-AA-A00N-01 3 121350644 121350644 G A HCLS1 3'UTR 0.24 TCGA-AA-A00N-01 3 121356006 121356006 G A HCLS1 Silent p.H184H 0.15 TCGA-AA-A00N-01 3 121411070 121411070 C A GOLGB1 Nonsense_Mutation p.E2381* 0.19 TCGA-AA-A00N-01 3 121724172 121724172 G A ILDR1 Missense_Mutation p.R100C 0.21 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 3 12195855 12195855 T C TIMP4 Missense_Mutation p.H150R 0.19 deleterious(0.03) possibly_damaging(0.465) TCGA-AA-A00N-01 3 122004031 122004031 A G CASR Missense_Mutation p.N1087S 0.11 deleterious_low_confidence(0.03) benign(0.015) TCGA-AA-A00N-01 3 122134718 122134718 C A WDR5B 5'UTR 0.23 TCGA-AA-A00N-01 3 122259537 122259537 A C PARP9 Missense_Mutation p.I551S 0.19 deleterious(0) probably_damaging(0.952) TCGA-AA-A00N-01 3 122437553 122437553 C T PARP14 Nonsense_Mutation p.R1519* 0.19 TCGA-AA-A00N-01 3 122487556 122487556 G T HSPBAP1 Missense_Mutation p.L142I 0.20 tolerated(1) benign(0.001) TCGA-AA-A00N-01 3 122835134 122835134 C T PDIA5 Nonsense_Mutation p.R200* 0.21 TCGA-AA-A00N-01 3 123348391 123348391 C T MYLK Missense_Mutation p.D1682N 0.22 deleterious(0) benign(0.099) TCGA-AA-A00N-01 3 123348444 123348444 T C MYLK Missense_Mutation p.D1664G 0.19 deleterious(0) benign(0.188) TCGA-AA-A00N-01 3 123420338 123420338 G A MYLK Silent p.C803C 0.07 TCGA-AA-A00N-01 3 123649953 123649953 T C CCDC14 Missense_Mutation p.T599A 0.23 deleterious(0) possibly_damaging(0.801) TCGA-AA-A00N-01 3 124103814 124103814 C T KALRN Silent p.F629F 0.16 TCGA-AA-A00N-01 3 124175467 124175467 A G KALRN Missense_Mutation p.D1247G 0.16 tolerated(0.06) benign(0.03) TCGA-AA-A00N-01 3 124438050 124438050 C T RP11-71H17.7 5'Flank 0.19 TCGA-AA-A00N-01 3 124632520 124632520 G A MUC13 Missense_Mutation p.R324W 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A00N-01 3 124732586 124732586 A C HEG1 Missense_Mutation p.S613A 0.27 deleterious(0.04) possibly_damaging(0.45) TCGA-AA-A00N-01 3 125286396 125286396 C T OSBPL11 Missense_Mutation p.R237Q 0.15 tolerated(0.42) benign(0.023) TCGA-AA-A00N-01 3 126268814 126268814 C T C3orf22 Missense_Mutation p.R108H 0.06 tolerated(0.55) benign(0.001) TCGA-AA-A00N-01 3 12650290 12650290 C T RAF1 Missense_Mutation p.D186N 0.22 tolerated(0.35) benign(0.168) TCGA-AA-A00N-01 3 126676323 126676323 C T CHCHD6 Missense_Mutation p.R211C 0.14 deleterious(0) possibly_damaging(0.644) TCGA-AA-A00N-01 3 127325561 127325561 C T MCM2 Silent p.F334F 0.19 TCGA-AA-A00N-01 3 127800173 127800173 C T RUVBL1 Missense_Mutation p.E431K 0.20 tolerated(0.4) benign(0.001) TCGA-AA-A00N-01 3 127965857 127965857 G T EEFSEC Missense_Mutation p.K165N 0.21 deleterious(0) benign(0.292) TCGA-AA-A00N-01 3 128077125 128077125 C T EEFSEC Silent p.F503F 0.22 TCGA-AA-A00N-01 3 12848908 12848908 G A CAND2 Missense_Mutation p.A106T 0.19 deleterious(0.02) benign(0.146) TCGA-AA-A00N-01 3 12857408 12857408 C T CAND2 Missense_Mutation p.R448W 0.24 deleterious(0) benign(0.001) TCGA-AA-A00N-01 3 128584225 128584225 C T RP11-723O4.9 5'Flank 0.17 TCGA-AA-A00N-01 3 12859148 12859148 C T CAND2 Missense_Mutation p.A906V 0.08 tolerated(0.19) benign(0.022) TCGA-AA-A00N-01 3 12868993 12868993 G A CAND2 Missense_Mutation p.A1089T 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-AA-A00N-01 3 128859210 128859210 C T ISY1 Splice_Site p.X140_splice 0.15 TCGA-AA-A00N-01 3 128979535 128979535 G A COPG1 Missense_Mutation p.R338H 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 129120635 129120635 G A EFCAB12 Missense_Mutation p.P507L 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 130092469 130092469 C A COL6A5 5'UTR 0.16 TCGA-AA-A00N-01 3 130092484 130092484 G T COL6A5 Translation_Start_Site p.M1? 0.19 deleterious(0.01) possibly_damaging(0.837) TCGA-AA-A00N-01 3 130098358 130098358 G T COL6A5 Missense_Mutation p.Q255H 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-AA-A00N-01 3 130107815 130107815 C T COL6A5 Missense_Mutation p.R752W 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 130116720 130116720 C T COL6A5 Missense_Mutation p.R1288W 0.26 deleterious(0) benign(0.339) TCGA-AA-A00N-01 3 130120681 130120681 G T COL6A5 Nonsense_Mutation p.G1404* 0.22 TCGA-AA-A00N-01 3 130174354 130174354 G T COL6A5 Nonsense_Mutation p.E2212* 0.30 TCGA-AA-A00N-01 3 130281956 130281956 C T COL6A6 Missense_Mutation p.R37C 0.19 deleterious(0.02) possibly_damaging(0.606) TCGA-AA-A00N-01 3 130287223 130287223 C A COL6A6 Missense_Mutation p.L726I 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 130409478 130409478 C T PIK3R4 Missense_Mutation p.R1040Q 0.24 tolerated(0.1) probably_damaging(0.951) TCGA-AA-A00N-01 3 130435362 130435362 C A PIK3R4 Missense_Mutation p.D737Y 0.09 deleterious(0.01) possibly_damaging(0.504) TCGA-AA-A00N-01 3 130698194 130698194 A G ATP2C1 Missense_Mutation p.T592A 0.21 tolerated(0.79) benign(0.005) TCGA-AA-A00N-01 3 131300426 131300426 G C CPNE4 Missense_Mutation p.C288W 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-AA-A00N-01 3 132320617 132320617 A C ACKR4 3'UTR 0.06 TCGA-AA-A00N-01 3 132338375 132338375 G T ACAD11 Missense_Mutation p.F404L 0.18 tolerated(0.23) benign(0.178) TCGA-AA-A00N-01 3 132395524 132395524 T G UBA5 3'UTR 0.25 TCGA-AA-A00N-01 3 133114861 133114861 T - TMEM108 3'UTR 0.09 TCGA-AA-A00N-01 3 133191192 133191192 C T BFSP2 Nonsense_Mutation p.R343* 0.32 TCGA-AA-A00N-01 3 133362190 133362190 C G TOPBP1 Missense_Mutation p.L625F 0.29 tolerated(0.11) benign(0.12) TCGA-AA-A00N-01 3 133467339 133467339 G A TF Missense_Mutation p.D43N 0.24 tolerated(0.26) benign(0.203) TCGA-AA-A00N-01 3 133473408 133473408 G A TF Missense_Mutation p.R132Q 0.21 tolerated(1) benign(0.007) TCGA-AA-A00N-01 3 133647572 133647572 G A C3orf36 Missense_Mutation p.P26S 0.14 tolerated_low_confidence(0.1) benign(0.032) TCGA-AA-A00N-01 3 133666178 133666178 G A SLCO2A1 Missense_Mutation p.T406I 0.16 tolerated(0.28) benign(0.031) TCGA-AA-A00N-01 3 134269046 134269046 G A CEP63 Missense_Mutation p.E442K 0.23 deleterious(0.01) possibly_damaging(0.888) TCGA-AA-A00N-01 3 134280303 134280303 C T CEP63 Missense_Mutation p.R680C 0.06 tolerated(0.36) probably_damaging(0.983) TCGA-AA-A00N-01 3 136219115 136219115 G A STAG1 Silent p.I284I 0.18 TCGA-AA-A00N-01 3 136240208 136240208 G A STAG1 Missense_Mutation p.R175C 0.20 deleterious(0) probably_damaging(0.953) TCGA-AA-A00N-01 3 136573866 136573866 A C SLC35G2 Silent p.I188I 0.26 TCGA-AA-A00N-01 3 13672917 13672917 G A FBLN2 Silent p.E1058E 0.22 TCGA-AA-A00N-01 3 137843592 137843592 C A A4GNT Missense_Mutation p.E179D 0.25 tolerated(0.36) benign(0.014) TCGA-AA-A00N-01 3 138014743 138014743 C T ARMC8 3'UTR 0.17 TCGA-AA-A00N-01 3 138188949 138188949 C A ESYT3 Missense_Mutation p.F517L 0.13 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 3 139097937 139097937 G A COPB2 Missense_Mutation p.R103C 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 140397068 140397068 C T TRIM42 5'UTR 0.27 TCGA-AA-A00N-01 3 141497441 141497441 G A GRK7 Silent p.A105A 0.10 TCGA-AA-A00N-01 3 14206403 14206403 T G XPC Missense_Mutation p.E270D 0.16 tolerated(1) benign(0.001) TCGA-AA-A00N-01 3 142139903 142139903 G A XRN1 Silent p.V376V 0.17 TCGA-AA-A00N-01 3 142681267 142681267 G A PAQR9 Silent p.F304F 0.08 TCGA-AA-A00N-01 3 142741439 142741439 G T U2SURP Missense_Mutation p.R318I 0.16 deleterious(0) probably_damaging(0.972) TCGA-AA-A00N-01 3 142840693 142840693 C A CHST2 Silent p.R345R 0.08 TCGA-AA-A00N-01 3 142841437 142841437 A C CHST2 3'UTR 0.19 TCGA-AA-A00N-01 3 143515702 143515702 G A SLC9A9 Missense_Mutation p.P141L 0.21 deleterious(0) probably_damaging(0.909) TCGA-AA-A00N-01 3 145796919 145796919 C T PLOD2 Missense_Mutation p.R495Q 0.16 tolerated(0.34) benign(0.258) TCGA-AA-A00N-01 3 14703099 14703099 G T CCDC174 Nonsense_Mutation p.E124* 0.20 TCGA-AA-A00N-01 3 14703156 14703156 G A CCDC174 Missense_Mutation p.D143N 0.21 deleterious(0.02) benign(0.002) TCGA-AA-A00N-01 3 148460186 148460186 A G AGTR1 3'UTR 0.16 TCGA-AA-A00N-01 3 148596485 148596485 C T CPA3 Missense_Mutation p.R142C 0.22 deleterious(0) benign(0.144) TCGA-AA-A00N-01 3 14862327 14862327 C A FGD5 Silent p.L583L 0.16 TCGA-AA-A00N-01 3 148756976 148756976 C T HLTF Missense_Mutation p.A886T 0.13 tolerated(1) benign(0.052) TCGA-AA-A00N-01 3 148766718 148766718 C T HLTF Missense_Mutation p.R563Q 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 148857971 148857971 C T HPS3 Missense_Mutation p.S133L 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-AA-A00N-01 3 149260151 149260151 G A WWTR1 Nonsense_Mutation p.R248* 0.07 TCGA-AA-A00N-01 3 149459322 149459322 G A COMMD2 Missense_Mutation p.R196C 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 149485858 149485858 G A ANKUB1 Silent p.Y197Y 0.06 TCGA-AA-A00N-01 3 149678777 149678777 C T RNF13 Silent p.D344D 0.18 TCGA-AA-A00N-01 3 150176284 150176284 C A TSC22D2 Missense_Mutation p.S735Y 0.18 deleterious(0) possibly_damaging(0.86) TCGA-AA-A00N-01 3 150460292 150460292 A G SIAH2 Missense_Mutation p.V204A 0.19 deleterious(0) probably_damaging(0.96) TCGA-AA-A00N-01 3 150645762 150645762 G A CLRN1 Silent p.D233D 0.17 TCGA-AA-A00N-01 3 150645834 150645834 A C CLRN1 Missense_Mutation p.F209L 0.29 tolerated(0.13) benign(0.02) TCGA-AA-A00N-01 3 150917160 150917160 G A GPR171 Missense_Mutation p.S5L 0.28 deleterious_low_confidence(0.02) benign(0.204) TCGA-AA-A00N-01 3 151102860 151102860 C T MED12L Nonsense_Mutation p.R1622* 0.18 TCGA-AA-A00N-01 3 151163622 151163622 C T IGSF10 Missense_Mutation p.E1383K 0.23 tolerated(0.7) benign(0.003) TCGA-AA-A00N-01 3 151164707 151164707 C T IGSF10 Missense_Mutation p.R1021Q 0.20 tolerated(0.08) probably_damaging(0.998) TCGA-AA-A00N-01 3 151166575 151166575 C T IGSF10 Silent p.P398P 0.28 TCGA-AA-A00N-01 3 15117158 15117158 C A ZFYVE20 Missense_Mutation p.K387N 0.05 tolerated(0.18) benign(0.13) TCGA-AA-A00N-01 3 151545407 151545407 C T AADAC Missense_Mutation p.S216F 0.09 deleterious(0.01) benign(0.02) TCGA-AA-A00N-01 3 152163204 152163204 G A MBNL1 Missense_Mutation p.R228K 0.15 tolerated(0.08) probably_damaging(0.992) TCGA-AA-A00N-01 3 152554844 152554844 A G P2RY1 3'UTR 0.18 TCGA-AA-A00N-01 3 15260000 15260000 A C CAPN7 Missense_Mutation p.K130N 0.19 tolerated(0.34) benign(0.024) TCGA-AA-A00N-01 3 15271964 15271964 A C CAPN7 Missense_Mutation p.Q318H 0.17 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 3 15287058 15287058 A G CAPN7 Silent p.G630G 0.19 TCGA-AA-A00N-01 3 152884943 152884943 A C RAP2B 3'UTR 0.36 TCGA-AA-A00N-01 3 152885655 152885655 T A RAP2B 3'UTR 0.21 TCGA-AA-A00N-01 3 152885822 152885822 C A RAP2B 3'UTR 0.19 TCGA-AA-A00N-01 3 153840682 153840682 G A ARHGEF26 Missense_Mutation p.D301N 0.18 deleterious(0.02) benign(0.03) TCGA-AA-A00N-01 3 153840780 153840780 G A ARHGEF26 Silent p.S333S 0.26 TCGA-AA-A00N-01 3 153905553 153905553 G A ARHGEF26 Missense_Mutation p.A523T 0.23 tolerated(0.43) benign(0.008) TCGA-AA-A00N-01 3 153958175 153958175 G A ARHGEF26 Missense_Mutation p.V703I 0.28 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 3 154147454 154147454 C A GPR149 5'UTR 0.23 TCGA-AA-A00N-01 3 155199199 155199199 C T PLCH1 Missense_Mutation p.R1547Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 15610010 15610010 G A HACL1 Silent p.F393F 0.25 TCGA-AA-A00N-01 3 156395884 156395884 G A TIPARP Missense_Mutation p.R133Q 0.16 tolerated_low_confidence(1) benign(0) TCGA-AA-A00N-01 3 156763234 156763234 C T LEKR1 Missense_Mutation p.R592C 0.40 tolerated(0.06) benign(0) TCGA-AA-A00N-01 3 157146114 157146114 G A VEPH1 Silent p.L231L 0.19 TCGA-AA-A00N-01 3 15726759 15726759 G A ANKRD28 Missense_Mutation p.T758M 0.07 deleterious(0.03) probably_damaging(0.992) TCGA-AA-A00N-01 3 158289166 158289166 C T MLF1 Intron 0.20 TCGA-AA-A00N-01 3 158991656 158991656 G A IQCJ-SCHIP1 Intron 0.14 TCGA-AA-A00N-01 3 160141306 160141306 C T SMC4 Missense_Mutation p.R705C 0.19 deleterious(0.01) benign(0.177) TCGA-AA-A00N-01 3 160253641 160253641 A G KPNA4 Silent p.H53H 0.17 TCGA-AA-A00N-01 3 160396116 160396116 C T ARL14 3'UTR 0.18 TCGA-AA-A00N-01 3 160679593 160679593 G T PPM1L Missense_Mutation p.D157Y 0.23 deleterious(0.02) benign(0.252) TCGA-AA-A00N-01 3 160942752 160942752 A C NMD3 Missense_Mutation p.N27H 0.21 deleterious(0) probably_damaging(0.985) TCGA-AA-A00N-01 3 160968616 160968616 G A NMD3 Missense_Mutation p.R477Q 0.25 tolerated(1) benign(0.002) TCGA-AA-A00N-01 3 161221501 161221501 G A OTOL1 Missense_Mutation p.R402Q 0.09 deleterious(0.05) benign(0.398) TCGA-AA-A00N-01 3 16252711 16252711 C T GALNT15 Missense_Mutation p.S387L 0.09 tolerated(0.23) probably_damaging(0.934) TCGA-AA-A00N-01 3 16261032 16261032 C A GALNT15 Missense_Mutation p.F505L 0.23 tolerated(0.22) benign(0.016) TCGA-AA-A00N-01 3 16343361 16343361 G A OXNAD1 Missense_Mutation p.E221K 0.19 deleterious(0) probably_damaging(0.975) TCGA-AA-A00N-01 3 164767589 164767589 C T SI Silent p.P529P 0.20 TCGA-AA-A00N-01 3 164907726 164907726 G A SLITRK3 Missense_Mutation p.S298L 0.19 tolerated(0.34) benign(0) TCGA-AA-A00N-01 3 16638305 16638305 A C DAZL Silent p.T170T 0.18 TCGA-AA-A00N-01 3 166958519 166958519 C T ZBBX 3'UTR 0.15 TCGA-AA-A00N-01 3 167045890 167045890 C T ZBBX Silent p.T234T 0.16 TCGA-AA-A00N-01 3 167164207 167164207 G T SERPINI2 Missense_Mutation p.L372M 0.18 tolerated(0.08) probably_damaging(0.993) TCGA-AA-A00N-01 3 167223188 167223188 C A WDR49 Missense_Mutation p.D579Y 0.19 deleterious(0.05) possibly_damaging(0.45) TCGA-AA-A00N-01 3 167728167 167728167 G A GOLIM4 Nonsense_Mutation p.R661* 0.16 TCGA-AA-A00N-01 3 168840424 168840424 G A MECOM Missense_Mutation p.R184C 0.18 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 3 169496638 169496638 G T MYNN Missense_Mutation p.D117Y 0.16 tolerated(0.74) probably_damaging(0.982) TCGA-AA-A00N-01 3 169498489 169498489 T C MYNN Missense_Mutation p.V391A 0.24 tolerated(0.52) benign(0.05) TCGA-AA-A00N-01 3 169802120 169802120 T G GPR160 Nonsense_Mutation p.Y120* 0.20 TCGA-AA-A00N-01 3 17051510 17051510 G T PLCL2 Missense_Mutation p.E98D 0.22 tolerated(1) benign(0.006) TCGA-AA-A00N-01 3 170584162 170584162 C T RPL22L1 3'UTR 0.12 TCGA-AA-A00N-01 3 170723086 170723086 G A SLC2A2 Silent p.S317S 0.17 TCGA-AA-A00N-01 3 170723778 170723778 G T SLC2A2 Silent p.P243P 0.16 TCGA-AA-A00N-01 3 17131289 17131289 T C PLCL2 Missense_Mutation p.F964S 0.18 tolerated(0.41) benign(0.001) TCGA-AA-A00N-01 3 171455716 171455716 G A PLD1 Silent p.Y42Y 0.13 TCGA-AA-A00N-01 3 172046819 172046819 A G FNDC3B Silent p.A444A 0.21 TCGA-AA-A00N-01 3 172480572 172480572 G T ECT2 Missense_Mutation p.K327N 0.32 tolerated(0.39) benign(0.003) TCGA-AA-A00N-01 3 172766761 172766761 G T SPATA16 Missense_Mutation p.L246I 0.24 tolerated(0.43) possibly_damaging(0.567) TCGA-AA-A00N-01 3 172835523 172835523 G A SPATA16 5'UTR 0.07 TCGA-AA-A00N-01 3 176743170 176743170 T G TBL1XR1 3'UTR 0.15 TCGA-AA-A00N-01 3 176765106 176765106 T C TBL1XR1 Silent p.L282L 0.22 TCGA-AA-A00N-01 3 176767804 176767804 A G TBL1XR1 Missense_Mutation p.V228A 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 3 178921549 178921549 T C PIK3CA Missense_Mutation p.V344A 0.13 deleterious(0.01) probably_damaging(0.938) TCGA-AA-A00N-01 3 178922301 178922301 G A PIK3CA Missense_Mutation p.R357Q 0.19 tolerated(0.09) possibly_damaging(0.69) TCGA-AA-A00N-01 3 178948093 178948093 T G PIK3CA Silent p.V955V 0.22 TCGA-AA-A00N-01 3 178952007 178952007 A G PIK3CA Missense_Mutation p.Y1021C 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 179093043 179093043 C T MFN1 Silent p.F337F 0.27 TCGA-AA-A00N-01 3 179132751 179132751 C T GNB4 Missense_Mutation p.D118N 0.29 deleterious(0) probably_damaging(0.912) TCGA-AA-A00N-01 3 179292181 179292181 G T ACTL6A Missense_Mutation p.E134D 0.17 deleterious(0.01) possibly_damaging(0.695) TCGA-AA-A00N-01 3 179306713 179306713 G T MRPL47 Missense_Mutation p.L234I 0.22 tolerated(0.09) possibly_damaging(0.786) TCGA-AA-A00N-01 3 179320488 179320488 C A MRPL47 Nonsense_Mutation p.E66* 0.10 TCGA-AA-A00N-01 3 179437748 179437748 G T USP13 Nonsense_Mutation p.E276* 0.15 TCGA-AA-A00N-01 3 179525470 179525470 G A PEX5L Silent p.G556G 0.19 TCGA-AA-A00N-01 3 180328304 180328304 G T TTC14 Nonsense_Mutation p.E763* 0.16 TCGA-AA-A00N-01 3 180364942 180364942 A G CCDC39 Silent p.I484I 0.06 TCGA-AA-A00N-01 3 180372618 180372618 G A CCDC39 Missense_Mutation p.R288C 0.32 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 3 180379663 180379663 T C CCDC39 Missense_Mutation p.K115E 0.07 deleterious(0.01) benign(0.115) TCGA-AA-A00N-01 3 180680848 180680848 C T FXR1 Missense_Mutation p.R390C 0.25 deleterious(0.04) probably_damaging(0.984) TCGA-AA-A00N-01 3 181430750 181430750 A G SOX2 Missense_Mutation p.D201G 0.24 deleterious(0) benign(0) TCGA-AA-A00N-01 3 182853553 182853553 C T LAMP3 Missense_Mutation p.D357N 0.27 tolerated(1) benign(0.001) TCGA-AA-A00N-01 3 183014843 183014843 C T MCF2L2 Missense_Mutation p.G473D 0.13 tolerated(0.45) benign(0.001) TCGA-AA-A00N-01 3 183368215 183368215 G A KLHL24 Missense_Mutation p.R24Q 0.21 tolerated_low_confidence(0.1) benign(0.005) TCGA-AA-A00N-01 3 183368322 183368322 C T KLHL24 Missense_Mutation p.R60C 0.10 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 183774718 183774718 C T HTR3C Nonsense_Mutation p.R149* 0.23 TCGA-AA-A00N-01 3 183822630 183822630 C T HTR3E Missense_Mutation p.R175C 0.18 tolerated(0.08) benign(0.076) TCGA-AA-A00N-01 3 183881460 183881460 G A DVL3 Silent p.E59E 0.16 TCGA-AA-A00N-01 3 183994688 183994688 C T ECE2 Silent p.F163F 0.20 TCGA-AA-A00N-01 3 183996094 183996094 T C ECE2 Missense_Mutation p.V366A 0.34 deleterious(0) possibly_damaging(0.507) TCGA-AA-A00N-01 3 184025485 184025485 C T PSMD2 Missense_Mutation p.R763C 0.08 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 184039537 184039537 G A EIF4G1 Missense_Mutation p.E396K 0.09 tolerated(0.12) benign(0.002) TCGA-AA-A00N-01 3 184090121 184090121 T G THPO 3'UTR 0.13 TCGA-AA-A00N-01 3 184429273 184429273 G T MAGEF1 Missense_Mutation p.L113M 0.18 tolerated(0.34) possibly_damaging(0.576) TCGA-AA-A00N-01 3 184633197 184633197 A C VPS8 Missense_Mutation p.I773L 0.10 tolerated(0.18) benign(0.01) TCGA-AA-A00N-01 3 184648274 184648274 A C VPS8 Missense_Mutation p.Y939S 0.19 deleterious(0) probably_damaging(0.934) TCGA-AA-A00N-01 3 184700809 184700809 C A VPS8 Missense_Mutation p.S1171Y 0.20 deleterious(0.02) benign(0.396) TCGA-AA-A00N-01 3 185190864 185190864 G A MAP3K13 Missense_Mutation p.S582N 0.25 deleterious(0.05) benign(0.004) TCGA-AA-A00N-01 3 185190985 185190985 C A MAP3K13 Missense_Mutation p.H622Q 0.18 tolerated_low_confidence(0.42) benign(0.001) TCGA-AA-A00N-01 3 185775242 185775242 C T ETV5 Missense_Mutation p.D337N 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 186272189 186272189 G T TBCCD1 Missense_Mutation p.F466L 0.20 deleterious(0) possibly_damaging(0.88) TCGA-AA-A00N-01 3 186386826 186386826 C T HRG Missense_Mutation p.R96C 0.22 deleterious(0.04) possibly_damaging(0.898) TCGA-AA-A00N-01 3 186390602 186390602 C T HRG Silent p.F195F 0.28 TCGA-AA-A00N-01 3 186443014 186443014 T G KNG1 Missense_Mutation p.F177V 0.11 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 186515394 186515394 G T RFC4 Missense_Mutation p.L74I 0.14 deleterious(0.01) probably_damaging(0.941) TCGA-AA-A00N-01 3 186572051 186572051 A G ADIPOQ Missense_Mutation p.Q98R 0.10 tolerated(0.8) possibly_damaging(0.552) TCGA-AA-A00N-01 3 186917743 186917743 C T RTP1 Missense_Mutation p.S226L 0.24 tolerated(0.31) benign(0) TCGA-AA-A00N-01 3 186917925 186917925 C T RTP1 3'UTR 0.20 TCGA-AA-A00N-01 3 186965163 186965163 G A MASP1 Intron 0.19 TCGA-AA-A00N-01 3 187386941 187386941 C A SST Missense_Mutation p.R88I 0.27 deleterious(0) probably_damaging(0.973) TCGA-AA-A00N-01 3 187447384 187447384 C T BCL6 Missense_Mutation p.R270Q 0.17 tolerated(0.17) benign(0.387) TCGA-AA-A00N-01 3 188477902 188477902 C T LPP Silent p.G414G 0.09 TCGA-AA-A00N-01 3 189526267 189526267 C T TP63 Silent p.F177F 0.19 TCGA-AA-A00N-01 3 189612028 189612028 C T TP63 Nonsense_Mutation p.R594* 0.10 TCGA-AA-A00N-01 3 190576765 190576765 G A GMNC Silent p.C73C 0.22 TCGA-AA-A00N-01 3 190936708 190936708 A G OSTN Missense_Mutation p.D92G 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 191087744 191087744 G A CCDC50 Missense_Mutation p.E123K 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-AA-A00N-01 3 193854256 193854256 G A HES1 Silent p.K29K 0.18 TCGA-AA-A00N-01 3 194118218 194118218 G A GP5 Missense_Mutation p.S265L 0.13 tolerated(0.95) benign(0.001) TCGA-AA-A00N-01 3 194140681 194140682 - A ATP13A3 Frame_Shift_Ins p.S1110Ffs*21 0.09 TCGA-AA-A00N-01 3 194325098 194325098 G A TMEM44 Missense_Mutation p.S412L 0.12 tolerated(0.15) possibly_damaging(0.519) TCGA-AA-A00N-01 3 194362826 194362826 G A LSG1 Missense_Mutation p.R650C 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 19479730 19479730 C T KCNH8 Nonsense_Mutation p.R418* 0.22 TCGA-AA-A00N-01 3 195512869 195512869 T G MUC4 Missense_Mutation p.D1861A 0.19 unknown(0) TCGA-AA-A00N-01 3 19551894 19551894 G C KCNH8 Splice_Site p.X693_splice 0.14 TCGA-AA-A00N-01 3 195591046 195591046 C T TNK2 3'UTR 0.09 TCGA-AA-A00N-01 3 195800873 195800873 C T TFRC Missense_Mutation p.R121H 0.26 tolerated(0.57) benign(0.001) TCGA-AA-A00N-01 3 195974263 195974263 G A PCYT1A Missense_Mutation p.T154I 0.15 deleterious(0.01) possibly_damaging(0.829) TCGA-AA-A00N-01 3 196044946 196044946 C A TCTEX1D2 Missense_Mutation p.E26D 0.24 tolerated(0.11) benign(0.218) TCGA-AA-A00N-01 3 196050736 196050736 A G TM4SF19 Silent p.H194H 0.19 TCGA-AA-A00N-01 3 196387211 196387211 G A NRROS Missense_Mutation p.V233I 0.13 tolerated(0.25) benign(0.011) TCGA-AA-A00N-01 3 196434669 196434669 G A CEP19 Missense_Mutation p.S86L 0.29 tolerated(0.21) benign(0.001) TCGA-AA-A00N-01 3 196460750 196460750 A C PIGX Missense_Mutation p.K270Q 0.08 deleterious(0) possibly_damaging(0.897) TCGA-AA-A00N-01 3 196921339 196921339 T G DLG1 Missense_Mutation p.N147T 0.32 deleterious_low_confidence(0.02) benign(0.287) TCGA-AA-A00N-01 3 197483411 197483411 G A FYTTD1 Missense_Mutation p.G73E 0.21 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 3 197547259 197547259 G T LRCH3 Missense_Mutation p.D200Y 0.20 deleterious(0) possibly_damaging(0.537) TCGA-AA-A00N-01 3 197670810 197670810 T C IQCG Missense_Mutation p.T41A 0.28 tolerated_low_confidence(0.6) benign(0.001) TCGA-AA-A00N-01 3 19924193 19924193 C T EFHB Missense_Mutation p.R726Q 0.15 deleterious(0) probably_damaging(0.982) TCGA-AA-A00N-01 3 20167466 20167466 G T KAT2B Nonsense_Mutation p.E495* 0.17 TCGA-AA-A00N-01 3 20167577 20167577 G T KAT2B Nonsense_Mutation p.E532* 0.22 TCGA-AA-A00N-01 3 20181725 20181725 G T KAT2B Nonsense_Mutation p.E625* 0.15 TCGA-AA-A00N-01 3 20202652 20202652 G A SGOL1 Missense_Mutation p.S544L 0.21 benign(0.003) TCGA-AA-A00N-01 3 21478572 21478572 C T ZNF385D Missense_Mutation p.S188N 0.27 tolerated(0.25) benign(0) TCGA-AA-A00N-01 3 21478589 21478589 C T ZNF385D Silent p.T182T 0.23 TCGA-AA-A00N-01 3 22424080 22424080 C T HMGB1P5 RNA 0.15 TCGA-AA-A00N-01 3 24006538 24006538 C T NR1D2 Missense_Mutation p.S406L 0.18 deleterious(0.02) benign(0.1) TCGA-AA-A00N-01 3 24164358 24164358 G T THRB 3'UTR 0.21 TCGA-AA-A00N-01 3 24188169 24188169 C A THRB Missense_Mutation p.D177Y 0.20 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 3 24188227 24188227 C T THRB Silent p.T157T 0.17 TCGA-AA-A00N-01 3 24231751 24231751 A G THRB Missense_Mutation p.S33P 0.20 deleterious_low_confidence(0) benign(0.007) TCGA-AA-A00N-01 3 25778846 25778846 G A NGLY1 Missense_Mutation p.R328C 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 25833220 25833220 G A OXSM Missense_Mutation p.D237N 0.17 deleterious(0) possibly_damaging(0.896) TCGA-AA-A00N-01 3 27761750 27761750 G A EOMES Silent p.F316F 0.17 TCGA-AA-A00N-01 3 3143430 3143430 C T IL5RA Missense_Mutation p.D105N 0.16 tolerated(0.97) benign(0.001) TCGA-AA-A00N-01 3 3144448 3144448 G T IL5RA Missense_Mutation p.L47I 0.22 deleterious(0.01) benign(0.391) TCGA-AA-A00N-01 3 31871543 31871543 C T OSBPL10 Missense_Mutation p.E240K 0.28 tolerated(0.07) possibly_damaging(0.562) TCGA-AA-A00N-01 3 32033045 32033045 T A ZNF860 3'UTR 0.25 TCGA-AA-A00N-01 3 32778972 32778972 G T CNOT10 Nonsense_Mutation p.E589* 0.18 TCGA-AA-A00N-01 3 33058237 33058237 T C GLB1 Silent p.G481G 0.20 TCGA-AA-A00N-01 3 33406139 33406139 C T FBXL2 Missense_Mutation p.S73L 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 3 33870403 33870403 A G PDCD6IP Missense_Mutation p.H264R 0.25 deleterious(0.01) possibly_damaging(0.818) TCGA-AA-A00N-01 3 33870431 33870431 G T PDCD6IP Missense_Mutation p.K273N 0.18 deleterious(0) possibly_damaging(0.902) TCGA-AA-A00N-01 3 35763216 35763216 G A ARPP21 Missense_Mutation p.R338H 0.23 deleterious(0.03) possibly_damaging(0.895) TCGA-AA-A00N-01 3 36779461 36779461 C A DCLK3 Missense_Mutation p.E230D 0.25 tolerated(0.12) benign(0.156) TCGA-AA-A00N-01 3 36873919 36873919 C T TRANK1 Silent p.G2341G 0.18 TCGA-AA-A00N-01 3 36896970 36896970 A G TRANK1 Missense_Mutation p.Y1371H 0.12 tolerated(0.22) benign(0.219) TCGA-AA-A00N-01 3 36897422 36897422 C A TRANK1 Missense_Mutation p.R1220I 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 36898939 36898939 C T TRANK1 Silent p.E714E 0.19 TCGA-AA-A00N-01 3 37032991 37032991 C G EPM2AIP1 Silent p.G526G 0.29 TCGA-AA-A00N-01 3 37033705 37033705 G A EPM2AIP1 Silent p.S288S 0.18 TCGA-AA-A00N-01 3 37323662 37323662 G T GOLGA4 Missense_Mutation p.D148Y 0.20 probably_damaging(0.997) TCGA-AA-A00N-01 3 37368196 37368196 G A GOLGA4 Missense_Mutation p.E1629K 0.20 possibly_damaging(0.759) TCGA-AA-A00N-01 3 37379195 37379195 G A GOLGA4 Silent p.S2137S 0.14 TCGA-AA-A00N-01 3 37379220 37379220 G A GOLGA4 Missense_Mutation p.E2146K 0.17 probably_damaging(0.999) TCGA-AA-A00N-01 3 38080921 38080921 C T DLEC1 Missense_Mutation p.L69F 0.08 tolerated_low_confidence(0.54) benign(0.022) TCGA-AA-A00N-01 3 38357162 38357162 T C SLC22A14 Missense_Mutation p.F498L 0.24 tolerated(0.68) benign(0.007) TCGA-AA-A00N-01 3 38404470 38404470 G A XYLB Missense_Mutation p.D85N 0.15 tolerated(0.2) benign(0.022) TCGA-AA-A00N-01 3 38438639 38438639 G A XYLB Missense_Mutation p.R476Q 0.05 tolerated(0.12) benign(0.187) TCGA-AA-A00N-01 3 38592171 38592171 G A SCN5A Missense_Mutation p.R1898C 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 38592409 38592409 G A SCN5A Silent p.A1818A 0.19 TCGA-AA-A00N-01 3 38592883 38592883 G A SCN5A Silent p.I1660I 0.13 TCGA-AA-A00N-01 3 38595795 38595795 G A SCN5A Silent p.F1596F 0.19 TCGA-AA-A00N-01 3 38628904 38628904 C T SCN5A Missense_Mutation p.R808H 0.15 deleterious(0.02) possibly_damaging(0.859) TCGA-AA-A00N-01 3 38629026 38629026 C A SCN5A Missense_Mutation p.K767N 0.08 deleterious(0) possibly_damaging(0.908) TCGA-AA-A00N-01 3 38639278 38639278 G A SCN5A Missense_Mutation p.A735V 0.20 deleterious(0) benign(0.26) TCGA-AA-A00N-01 3 38798200 38798200 G A SCN10A Nonsense_Mutation p.Q419* 0.26 TCGA-AA-A00N-01 3 38798226 38798226 T G SCN10A Missense_Mutation p.E410A 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 38812845 38812845 C A SCN10A Missense_Mutation p.R175I 0.18 deleterious(0) probably_damaging(0.949) TCGA-AA-A00N-01 3 3886242 3886242 C T LRRN1 5'UTR 0.25 TCGA-AA-A00N-01 3 3888446 3888446 C T LRRN1 Silent p.V707V 0.15 TCGA-AA-A00N-01 3 38892115 38892115 T G SCN11A Missense_Mutation p.K1395T 0.21 tolerated(0.95) benign(0) TCGA-AA-A00N-01 3 39142260 39142260 C T GORASP1 Missense_Mutation p.A182T 0.35 tolerated(0.07) benign(0.255) TCGA-AA-A00N-01 3 39178409 39178409 G A TTC21A Missense_Mutation p.E1046K 0.08 tolerated(0.11) benign(0.028) TCGA-AA-A00N-01 3 39178857 39178857 C A TTC21A Missense_Mutation p.F1150L 0.08 tolerated(0.08) benign(0.228) TCGA-AA-A00N-01 3 39227652 39227652 T G XIRP1 Missense_Mutation p.K1095N 0.22 tolerated(0.33) benign(0.075) TCGA-AA-A00N-01 3 39374186 39374186 T C CCR8 Missense_Mutation p.F122L 0.27 deleterious(0.03) benign(0.327) TCGA-AA-A00N-01 3 402097 402097 T C CHL1 Silent p.I432I 0.20 TCGA-AA-A00N-01 3 403485 403485 C T CHL1 Silent p.V470V 0.08 TCGA-AA-A00N-01 3 40528599 40528599 G T ZNF619 Nonsense_Mutation p.E240* 0.14 TCGA-AA-A00N-01 3 40529110 40529110 A C ZNF619 Missense_Mutation p.K410T 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-AA-A00N-01 3 40557915 40557915 A G ZNF620 Missense_Mutation p.E277G 0.10 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 3 40558427 40558427 G A ZNF620 3'UTR 0.20 TCGA-AA-A00N-01 3 40574193 40574193 G T ZNF621 Missense_Mutation p.R311I 0.17 deleterious(0.02) possibly_damaging(0.559) TCGA-AA-A00N-01 3 40574262 40574262 T G ZNF621 Missense_Mutation p.F334C 0.24 deleterious(0) possibly_damaging(0.87) TCGA-AA-A00N-01 3 41266078 41266078 G A CTNNB1 Nonsense_Mutation p.W25* 0.19 TCGA-AA-A00N-01 3 41723119 41723119 C T ULK4 Missense_Mutation p.R953Q 0.21 deleterious(0.04) possibly_damaging(0.646) TCGA-AA-A00N-01 3 42798677 42798677 C T CCDC13 Missense_Mutation p.R84Q 0.25 tolerated(0.9) probably_damaging(1) TCGA-AA-A00N-01 3 42915903 42915903 T C CYP8B1 Missense_Mutation p.D469G 0.08 tolerated(0.07) benign(0.063) TCGA-AA-A00N-01 3 42917232 42917232 C T CYP8B1 Missense_Mutation p.R26Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 3 43074777 43074777 G A FAM198A Missense_Mutation p.R341H 0.20 tolerated(0.19) benign(0.008) TCGA-AA-A00N-01 3 43122149 43122149 C T POMGNT2 Missense_Mutation p.V259I 0.17 tolerated(0.21) possibly_damaging(0.876) TCGA-AA-A00N-01 3 43122318 43122318 G T POMGNT2 Missense_Mutation p.H202Q 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-AA-A00N-01 3 43408356 43408356 A C ANO10 3'UTR 0.22 TCGA-AA-A00N-01 3 4358308 4358308 C A SETMAR Missense_Mutation p.S478Y 0.19 deleterious_low_confidence(0.04) unknown(0) TCGA-AA-A00N-01 3 44285341 44285341 C T TOPAZ1 Missense_Mutation p.S448L 0.29 tolerated(0.35) benign(0.009) TCGA-AA-A00N-01 3 44286533 44286533 T G TOPAZ1 Missense_Mutation p.F845L 0.25 tolerated(0.39) benign(0.015) TCGA-AA-A00N-01 3 44488743 44488743 C T ZNF445 Missense_Mutation p.R807Q 0.16 tolerated(0.1) unknown(0) TCGA-AA-A00N-01 3 44541791 44541791 G A ZNF852 Nonsense_Mutation p.R160* 0.18 TCGA-AA-A00N-01 3 44612650 44612650 G T ZKSCAN7 Missense_Mutation p.R683I 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 44635528 44635528 G T RP11-944L7.5 Missense_Mutation p.E113D 0.20 tolerated(0.14) benign(0.001) TCGA-AA-A00N-01 3 44685401 44685401 G A ZNF197 Missense_Mutation p.E927K 0.11 deleterious(0.01) possibly_damaging(0.784) TCGA-AA-A00N-01 3 44688169 44688169 C A ZNF197 3'Flank 0.41 TCGA-AA-A00N-01 3 44763890 44763890 C A ZNF502 Missense_Mutation p.F527L 0.21 tolerated(0.16) benign(0.124) TCGA-AA-A00N-01 3 44893345 44893345 C T KIF15 Silent p.V1291V 0.09 TCGA-AA-A00N-01 3 4494699 4494699 C T SUMF1 Missense_Mutation p.G102D 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 44959616 44959616 C T TGM4 3'Flank 0.25 TCGA-AA-A00N-01 3 45000749 45000749 G A ZDHHC3 Silent p.F60F 0.15 TCGA-AA-A00N-01 3 45052907 45052907 C T EXOSC7 3'UTR 0.15 TCGA-AA-A00N-01 3 45127354 45127354 G A CDCP1 Missense_Mutation p.R763W 0.17 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 3 45636794 45636794 G A LIMD1 Silent p.T141T 0.10 TCGA-AA-A00N-01 3 45972743 45972743 G A FYCO1 Silent p.I1357I 0.11 TCGA-AA-A00N-01 3 46245020 46245020 G T CCR1 Missense_Mutation p.S262Y 0.15 tolerated(0.13) possibly_damaging(0.879) TCGA-AA-A00N-01 3 46401170 46401170 T G CCR2 Missense_Mutation p.L315R 0.30 deleterious(0.02) benign(0.084) TCGA-AA-A00N-01 3 4687281 4687281 C T ITPR1 Silent p.L242L 0.16 TCGA-AA-A00N-01 3 47050546 47050546 C T NBEAL2 Missense_Mutation p.R2699C 0.21 tolerated(0.22) benign(0.001) TCGA-AA-A00N-01 3 47098909 47098909 C T SETD2 Missense_Mutation p.R2122Q 0.08 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 3 47158132 47158132 G A SETD2 Missense_Mutation p.R1523C 0.25 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 3 47165714 47165714 C A SETD2 Nonsense_Mutation p.E138* 0.21 TCGA-AA-A00N-01 3 47950747 47950747 G A MAP4 Intron 0.14 TCGA-AA-A00N-01 3 48219374 48219374 G A CDC25A Silent p.F218F 0.18 TCGA-AA-A00N-01 3 48309682 48309682 C A ZNF589 Missense_Mutation p.F167L 0.33 tolerated(0.33) possibly_damaging(0.483) TCGA-AA-A00N-01 3 48348438 48348438 G A SPINK8 3'UTR 0.16 TCGA-AA-A00N-01 3 48474451 48474451 C A CCDC51 Missense_Mutation p.K201N 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 4853086 4853086 C A ITPR1 Missense_Mutation p.F2455L 0.16 tolerated(0.08) benign(0.2) TCGA-AA-A00N-01 3 48686571 48686571 G A CELSR3 Nonsense_Mutation p.R2184* 0.14 TCGA-AA-A00N-01 3 48916844 48916844 C T SLC25A20 Missense_Mutation p.V122I 0.22 tolerated(0.53) benign(0.074) TCGA-AA-A00N-01 3 49011195 49011195 G T ARIH2 Silent p.T278T 0.08 TCGA-AA-A00N-01 3 49135487 49135487 C T QARS Missense_Mutation p.D739N 0.24 deleterious(0.01) benign(0.056) TCGA-AA-A00N-01 3 49151503 49151503 C A USP19 Missense_Mutation p.E807D 0.28 tolerated(0.11) possibly_damaging(0.475) TCGA-AA-A00N-01 3 49547893 49547893 G T DAG1 5'UTR 0.15 TCGA-AA-A00N-01 3 49680356 49680356 C T BSN Missense_Mutation p.P430L 0.26 unknown(0) TCGA-AA-A00N-01 3 49694085 49694085 C T BSN Missense_Mutation p.R2366W 0.14 unknown(0) TCGA-AA-A00N-01 3 49699361 49699361 G A BSN Silent p.R3361R 0.15 TCGA-AA-A00N-01 3 49898170 49898170 A G CAMKV Missense_Mutation p.W252R 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 49898728 49898728 C A CAMKV Missense_Mutation p.E149D 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A00N-01 3 49947944 49947944 G A MON1A Silent p.L426L 0.26 TCGA-AA-A00N-01 3 5022090 5022090 T G BHLHE40 Silent p.L85L 0.24 TCGA-AA-A00N-01 3 50253064 50253064 C T SLC38A3 RNA 0.26 TCGA-AA-A00N-01 3 50416407 50416407 G A CACNA2D2 Silent p.F426F 0.20 TCGA-AA-A00N-01 3 50416968 50416968 A G CACNA2D2 Silent p.N349N 0.18 TCGA-AA-A00N-01 3 51251579 51251579 C T DOCK3 Missense_Mutation p.R385C 0.25 deleterious(0.01) possibly_damaging(0.77) TCGA-AA-A00N-01 3 51315127 51315127 C T DOCK3 Missense_Mutation p.S922L 0.21 deleterious(0.05) possibly_damaging(0.83) TCGA-AA-A00N-01 3 51347683 51347683 T G DOCK3 Missense_Mutation p.F981L 0.21 tolerated(0.15) benign(0.006) TCGA-AA-A00N-01 3 51370620 51370620 C T DOCK3 Missense_Mutation p.R1183C 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 3 51431203 51431203 T C RBM15B Silent p.Y791Y 0.16 TCGA-AA-A00N-01 3 51812803 51812803 G A IQCF6 Nonsense_Mutation p.R54* 0.09 TCGA-AA-A00N-01 3 52004193 52004193 C T ABHD14B Silent p.G73G 0.18 TCGA-AA-A00N-01 3 52427469 52427469 C T DNAH1 Missense_Mutation p.R3532C 0.20 probably_damaging(0.953) TCGA-AA-A00N-01 3 52476595 52476595 G A SEMA3G Nonsense_Mutation p.R107* 0.05 TCGA-AA-A00N-01 3 52524838 52524838 T G NISCH Missense_Mutation p.F1244C 0.17 deleterious(0) probably_damaging(0.971) TCGA-AA-A00N-01 3 52540786 52540786 C T STAB1 Silent p.L637L 0.11 TCGA-AA-A00N-01 3 52551966 52551966 G A STAB1 Missense_Mutation p.D1570N 0.29 tolerated(0.36) benign(0.002) TCGA-AA-A00N-01 3 52557503 52557503 G A STAB1 Missense_Mutation p.A2401T 0.18 deleterious(0.01) benign(0.158) TCGA-AA-A00N-01 3 52598110 52598110 A C PBRM1 Missense_Mutation p.F1252L 0.09 deleterious(0.01) benign(0.294) TCGA-AA-A00N-01 3 52724624 52724624 G A GNL3 Silent p.E186E 0.14 TCGA-AA-A00N-01 3 52731779 52731779 A C GLT8D1 Missense_Mutation p.I96S 0.28 deleterious(0.04) benign(0.077) TCGA-AA-A00N-01 3 52797488 52797488 C A NEK4 Missense_Mutation p.K273N 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 52834998 52834998 A C ITIH3 Missense_Mutation p.K407Q 0.28 tolerated(0.62) benign(0.062) TCGA-AA-A00N-01 3 52836433 52836433 G T ITIH3 Missense_Mutation p.Q489H 0.19 deleterious(0.01) possibly_damaging(0.823) TCGA-AA-A00N-01 3 52853423 52853423 C T ITIH4 Missense_Mutation p.R688H 0.06 tolerated(0.2) benign(0.003) TCGA-AA-A00N-01 3 52941178 52941178 T G SFMBT1 Silent p.I746I 0.19 TCGA-AA-A00N-01 3 54661843 54661843 C T CACNA2D3 Silent p.F331F 0.19 TCGA-AA-A00N-01 3 54958812 54958812 C A LRTM1 Missense_Mutation p.E146D 0.12 tolerated(0.26) benign(0.338) TCGA-AA-A00N-01 3 56468960 56468960 G A ERC2 Missense_Mutation p.R26C 0.21 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 3 56667870 56667870 G C FAM208A Missense_Mutation p.D983E 0.25 tolerated(0.22) possibly_damaging(0.474) TCGA-AA-A00N-01 3 56680718 56680718 C A FAM208A Nonsense_Mutation p.E683* 0.17 TCGA-AA-A00N-01 3 57283495 57283495 A G APPL1 Missense_Mutation p.D324G 0.19 deleterious(0) benign(0.096) TCGA-AA-A00N-01 3 57431942 57431942 C T DNAH12 Missense_Mutation p.R1309Q 0.23 deleterious(0) possibly_damaging(0.553) TCGA-AA-A00N-01 3 57542526 57542526 T C PDE12 Silent p.D140D 0.16 TCGA-AA-A00N-01 3 57543397 57543397 A G PDE12 Missense_Mutation p.R431G 0.21 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 3 58118655 58118655 G A FLNB Missense_Mutation p.R1535H 0.16 tolerated(0.19) benign(0.027) TCGA-AA-A00N-01 3 58133944 58133944 C T FLNB Missense_Mutation p.R1945W 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 58155351 58155351 G A FLNB Silent p.E2515E 0.09 TCGA-AA-A00N-01 3 58417651 58417651 C T PDHB Missense_Mutation p.V53I 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 3 58510276 58510276 C A ACOX2 Missense_Mutation p.R468I 0.19 tolerated(0.1) benign(0.067) TCGA-AA-A00N-01 3 58622081 58622081 G A FAM3D Silent p.F175F 0.28 TCGA-AA-A00N-01 3 62278211 62278211 C T PTPRG Missense_Mutation p.P1391S 0.12 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 3 62357876 62357876 G A FEZF2 Missense_Mutation p.A223V 0.21 tolerated(0.47) benign(0.008) TCGA-AA-A00N-01 3 62384954 62384954 C T CADPS 3'UTR 0.18 TCGA-AA-A00N-01 3 62463953 62463953 G A CADPS Silent p.I1104I 0.18 TCGA-AA-A00N-01 3 62631435 62631435 C A CADPS Missense_Mutation p.E429D 0.18 tolerated(0.11) benign(0.217) TCGA-AA-A00N-01 3 62648032 62648032 C T CADPS Missense_Mutation p.R309Q 0.26 deleterious(0) benign(0.238) TCGA-AA-A00N-01 3 62739262 62739262 C T CADPS Missense_Mutation p.E248K 0.19 tolerated(0.06) benign(0.292) TCGA-AA-A00N-01 3 63965845 63965845 T C ATXN7 Splice_Site p.X251_splice 0.26 TCGA-AA-A00N-01 3 64085446 64085446 G A PRICKLE2 Missense_Mutation p.R606C 0.14 deleterious(0) possibly_damaging(0.807) TCGA-AA-A00N-01 3 64554177 64554177 C T ADAMTS9 Missense_Mutation p.R1464Q 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 3 64608191 64608191 G A ADAMTS9 Missense_Mutation p.R821C 0.15 deleterious(0.01) possibly_damaging(0.849) TCGA-AA-A00N-01 3 65346794 65346794 G T MAGI1 Intron 0.19 TCGA-AA-A00N-01 3 66430799 66430799 A T LRIG1 Missense_Mutation p.V1057D 0.16 deleterious_low_confidence(0) benign(0.193) TCGA-AA-A00N-01 3 66433405 66433405 C T LRIG1 Splice_Site p.X831_splice 0.23 TCGA-AA-A00N-01 3 6903210 6903210 C T GRM7 Silent p.I45I 0.25 TCGA-AA-A00N-01 3 69087843 69087843 C T TMF1 Missense_Mutation p.A675T 0.14 deleterious(0.02) probably_damaging(0.979) TCGA-AA-A00N-01 3 69092962 69092962 C A TMF1 Missense_Mutation p.R506I 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 3 69151132 69151132 T C ARL6IP5 Silent p.L107L 0.19 TCGA-AA-A00N-01 3 69168476 69168476 G A LMOD3 Missense_Mutation p.R344W 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 3 73024146 73024146 C A GXYLT2 Missense_Mutation p.L390I 0.20 tolerated(0.25) benign(0.077) TCGA-AA-A00N-01 3 73111264 73111264 T C EBLN2 Missense_Mutation p.V11A 0.23 tolerated_low_confidence(0.13) benign(0.003) TCGA-AA-A00N-01 3 73111526 73111526 G A EBLN2 Silent p.G98G 0.25 TCGA-AA-A00N-01 3 7721965 7721965 A C GRM7 Missense_Mutation p.E894A 0.19 deleterious_low_confidence(0.02) probably_damaging(0.914) TCGA-AA-A00N-01 3 77666773 77666773 C T ROBO2 Nonsense_Mutation p.R1151* 0.20 TCGA-AA-A00N-01 3 77671464 77671464 C T ROBO2 Missense_Mutation p.T1230M 0.14 deleterious(0.02) possibly_damaging(0.791) TCGA-AA-A00N-01 3 77671490 77671490 G A ROBO2 Missense_Mutation p.D1239N 0.20 tolerated(0.24) possibly_damaging(0.555) TCGA-AA-A00N-01 3 78710372 78710372 G T ROBO1 Missense_Mutation p.L710I 0.23 tolerated(0.05) probably_damaging(0.987) TCGA-AA-A00N-01 3 81754640 81754640 C A GBE1 Nonsense_Mutation p.E90* 0.21 TCGA-AA-A00N-01 3 8574502 8574502 A C LMCD1 Missense_Mutation p.H41P 0.23 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 3 8578904 8578904 G A LMCD1 Silent p.E55E 0.14 TCGA-AA-A00N-01 3 85961545 85961545 G T CADM2 Missense_Mutation p.E177D 0.13 tolerated(0.14) possibly_damaging(0.562) TCGA-AA-A00N-01 3 86010704 86010704 C A CADM2 Missense_Mutation p.L286I 0.19 tolerated(0.48) benign(0.002) TCGA-AA-A00N-01 3 88041128 88041128 T C HTR1F 3'UTR 0.27 TCGA-AA-A00N-01 3 89528731 89528731 C A EPHA3 3'UTR 0.15 TCGA-AA-A00N-01 3 93619765 93619765 C A PROS1 Nonsense_Mutation p.E204* 0.20 TCGA-AA-A00N-01 3 95374304 95374304 C T MTHFD2P1 RNA 0.28 TCGA-AA-A00N-01 3 9754459 9754459 C A CPNE9 Missense_Mutation p.F164L 0.08 tolerated(0.31) possibly_damaging(0.856) TCGA-AA-A00N-01 3 97596225 97596225 G T CRYBG3 Missense_Mutation p.D115Y 0.21 deleterious(0) possibly_damaging(0.759) TCGA-AA-A00N-01 3 98001798 98001798 A G OR5H2 Missense_Mutation p.T23A 0.09 deleterious(0.04) benign(0.013) TCGA-AA-A00N-01 3 9804710 9804710 C T CAMK1 Missense_Mutation p.R106H 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A00N-01 3 98072790 98072790 C A OR5K4 Missense_Mutation p.F31L 0.20 deleterious(0.01) benign(0.32) TCGA-AA-A00N-01 3 98188964 98188964 C T OR5K1 Missense_Mutation p.L182F 0.21 tolerated(0.07) possibly_damaging(0.892) TCGA-AA-A00N-01 3 98299569 98299569 T G CPOX Missense_Mutation p.E441D 0.11 tolerated(0.07) benign(0.253) TCGA-AA-A00N-01 3 98492775 98492775 C T ST3GAL6 Nonsense_Mutation p.R95* 0.17 TCGA-AA-A00N-01 3 98518389 98518389 G T DCBLD2 Missense_Mutation p.L719I 0.15 deleterious(0.01) benign(0.027) TCGA-AA-A00N-01 3 98538056 98538056 C A DCBLD2 Missense_Mutation p.K359N 0.16 deleterious(0) possibly_damaging(0.906) TCGA-AA-A00N-01 3 99509537 99509537 T G COL8A1 Missense_Mutation p.L4R 0.22 tolerated_low_confidence(0.32) unknown(0) TCGA-AA-A00N-01 3 99569173 99569173 T G FILIP1L Missense_Mutation p.E449D 0.26 deleterious(0.03) benign(0.027) TCGA-AA-A00N-01 4 100479277 100479277 G A TRMT10A Nonsense_Mutation p.R93* 0.22 TCGA-AA-A00N-01 4 100528025 100528025 C A MTTP Missense_Mutation p.L489I 0.21 deleterious(0.02) possibly_damaging(0.648) TCGA-AA-A00N-01 4 103500107 103500107 G A NFKB1 Missense_Mutation p.R214Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 4 103553302 103553302 C T MANBA Missense_Mutation p.R851Q 0.07 tolerated(0.11) benign(0.016) TCGA-AA-A00N-01 4 104030019 104030019 G T CENPE Missense_Mutation p.S2651Y 0.13 probably_damaging(0.94) TCGA-AA-A00N-01 4 10447326 10447326 C T ZNF518B Silent p.T209T 0.30 TCGA-AA-A00N-01 4 10543885 10543885 C A CLNK Missense_Mutation p.K155N 0.06 tolerated(0.47) benign(0.07) TCGA-AA-A00N-01 4 10567679 10567679 C T CLNK Silent p.S82S 0.21 TCGA-AA-A00N-01 4 106155471 106155471 C A TET2 Missense_Mutation p.N124K 0.07 deleterious(0.03) benign(0.081) TCGA-AA-A00N-01 4 106158798 106158798 C T TET2 Intron 0.23 TCGA-AA-A00N-01 4 106162220 106162220 C A TET2 Intron 0.17 TCGA-AA-A00N-01 4 1066693 1066693 A C RNF212 Missense_Mutation p.L288R 0.06 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-AA-A00N-01 4 108829804 108829804 G A SGMS2 Missense_Mutation p.E271K 0.14 tolerated(0.16) probably_damaging(0.994) TCGA-AA-A00N-01 4 109769918 109769918 C T COL25A1 Silent p.E477E 0.15 TCGA-AA-A00N-01 4 110427571 110427571 A C SEC24B Missense_Mutation p.N526H 0.19 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 4 110581427 110581427 C T CCDC109B Silent p.F84F 0.23 TCGA-AA-A00N-01 4 111412220 111412220 G A ENPEP Missense_Mutation p.R273Q 0.06 tolerated(0.15) benign(0.013) TCGA-AA-A00N-01 4 111412254 111412254 G A ENPEP Silent p.T284T 0.14 TCGA-AA-A00N-01 4 113506812 113506812 G T C4orf21 Nonsense_Mutation p.S1329* 0.20 TCGA-AA-A00N-01 4 113506864 113506864 G A C4orf21 Silent p.L1312L 0.26 TCGA-AA-A00N-01 4 114284560 114284560 C A ANK2 Missense_Mutation p.S3608Y 0.11 probably_damaging(1) TCGA-AA-A00N-01 4 118005452 118005452 C A TRAM1L1 Missense_Mutation p.E366D 0.23 tolerated(0.46) benign(0.144) TCGA-AA-A00N-01 4 119444584 119444584 C T CEP170P1 RNA 0.28 TCGA-AA-A00N-01 4 119678935 119678935 C A SEC24D Missense_Mutation p.K454N 0.21 deleterious(0.05) benign(0.236) TCGA-AA-A00N-01 4 119951558 119951558 C T SYNPO2 Missense_Mutation p.S543L 0.23 deleterious(0.04) benign(0.279) TCGA-AA-A00N-01 4 119952194 119952194 C T SYNPO2 Missense_Mutation p.T755I 0.18 tolerated(0.31) benign(0.209) TCGA-AA-A00N-01 4 120192649 120192649 A C USP53 Missense_Mutation p.K545T 0.25 deleterious(0.03) benign(0.058) TCGA-AA-A00N-01 4 121719454 121719454 C T PRDM5 Missense_Mutation p.A386T 0.20 tolerated(0.33) possibly_damaging(0.741) TCGA-AA-A00N-01 4 121739566 121739566 C A PRDM5 Nonsense_Mutation p.E198* 0.13 TCGA-AA-A00N-01 4 122075754 122075754 C T TNIP3 Silent p.A225A 0.28 TCGA-AA-A00N-01 4 122853623 122853623 C T TRPC3 Missense_Mutation p.D264N 0.21 tolerated(0.15) benign(0.233) TCGA-AA-A00N-01 4 123168391 123168391 G T KIAA1109 Missense_Mutation p.K1797N 0.26 probably_damaging(0.997) TCGA-AA-A00N-01 4 123257347 123257347 C A KIAA1109 Missense_Mutation p.A3950D 0.09 probably_damaging(0.995) TCGA-AA-A00N-01 4 123270676 123270676 C T KIAA1109 Missense_Mutation p.R4504C 0.21 probably_damaging(0.999) TCGA-AA-A00N-01 4 123301310 123301310 C T ADAD1 Missense_Mutation p.A29V 0.21 tolerated(0.62) benign(0.001) TCGA-AA-A00N-01 4 123665893 123665893 G A BBS12 3'UTR 0.17 TCGA-AA-A00N-01 4 123748506 123748506 C T FGF2 Silent p.H192H 0.24 TCGA-AA-A00N-01 4 123854609 123854609 A C SPATA5 Missense_Mutation p.E154D 0.15 tolerated(0.63) benign(0.001) TCGA-AA-A00N-01 4 124323798 124323798 T G SPRY1 3'UTR 0.06 TCGA-AA-A00N-01 4 125590864 125590864 A C ANKRD50 Missense_Mutation p.S1190A 0.26 tolerated(0.12) benign(0.188) TCGA-AA-A00N-01 4 126242577 126242577 C T FAT4 Missense_Mutation p.R1671C 0.14 possibly_damaging(0.77) TCGA-AA-A00N-01 4 126336757 126336757 C T FAT4 Silent p.V2213V 0.28 TCGA-AA-A00N-01 4 126370341 126370341 G T FAT4 Nonsense_Mutation p.E2724* 0.23 TCGA-AA-A00N-01 4 126371438 126371438 C T FAT4 Silent p.F3089F 0.20 TCGA-AA-A00N-01 4 128564914 128564914 A T INTU Missense_Mutation p.N129Y 0.07 deleterious(0.02) benign(0.272) TCGA-AA-A00N-01 4 128564985 128564985 C A INTU Silent p.V152V 0.16 TCGA-AA-A00N-01 4 128577819 128577819 C T INTU Silent p.V237V 0.05 TCGA-AA-A00N-01 4 128632225 128632225 C T INTU Missense_Mutation p.R843C 0.21 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 4 128635116 128635116 A G INTU Missense_Mutation p.D862G 0.13 tolerated(0.32) benign(0.004) TCGA-AA-A00N-01 4 128637615 128637615 A G INTU 3'UTR 0.18 TCGA-AA-A00N-01 4 128688341 128688341 G A SLC25A31 Missense_Mutation p.R200Q 0.19 tolerated(0.07) benign(0.235) TCGA-AA-A00N-01 4 128802990 128802990 T G PLK4 Missense_Mutation p.F12C 0.10 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 4 128951855 128951855 C T C4orf29 3'UTR 0.16 TCGA-AA-A00N-01 4 129120739 129120739 C T LARP1B Nonsense_Mutation p.R717* 0.10 TCGA-AA-A00N-01 4 129793345 129793345 G T JADE1 Missense_Mutation p.K819N 0.21 tolerated(0.18) benign(0.273) TCGA-AA-A00N-01 4 135121530 135121530 T G PABPC4L Missense_Mutation p.K273N 0.39 tolerated(0.18) benign(0.178) TCGA-AA-A00N-01 4 1369175 1369175 G T UVSSA Missense_Mutation p.D438Y 0.12 deleterious(0.01) benign(0.197) TCGA-AA-A00N-01 4 138442405 138442405 A G PCDH18 Silent p.F1062F 0.30 TCGA-AA-A00N-01 4 138451823 138451823 T A PCDH18 Missense_Mutation p.I474F 0.28 tolerated(0.1) possibly_damaging(0.703) TCGA-AA-A00N-01 4 138452691 138452691 G A PCDH18 Silent p.I184I 0.23 TCGA-AA-A00N-01 4 140255354 140255354 A G NAA15 Silent p.R27R 0.06 TCGA-AA-A00N-01 4 140299913 140299913 A C NAA15 Missense_Mutation p.K687T 0.20 deleterious(0.03) probably_damaging(0.936) TCGA-AA-A00N-01 4 140393926 140393926 C T RAB33B Silent p.F112F 0.23 TCGA-AA-A00N-01 4 141543301 141543301 A C TBC1D9 3'UTR 0.08 TCGA-AA-A00N-01 4 141591949 141591949 A G TBC1D9 Silent p.D397D 0.07 TCGA-AA-A00N-01 4 141789277 141789277 C T RNF150 3'UTR 0.27 TCGA-AA-A00N-01 4 141832470 141832470 G A RNF150 Silent p.F342F 0.08 TCGA-AA-A00N-01 4 141870498 141870498 G A RNF150 Missense_Mutation p.A255V 0.21 tolerated(0.14) possibly_damaging(0.877) TCGA-AA-A00N-01 4 142949895 142949895 A G INPP4B 3'UTR 0.21 TCGA-AA-A00N-01 4 142950021 142950021 T G INPP4B Missense_Mutation p.K897Q 0.27 deleterious(0) possibly_damaging(0.732) TCGA-AA-A00N-01 4 144135300 144135300 A G USP38 Missense_Mutation p.Y724C 0.28 deleterious(0) probably_damaging(0.96) TCGA-AA-A00N-01 4 144336882 144336882 C T GAB1 Missense_Mutation p.R109C 0.05 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 4 144390263 144390263 C A GAB1 Missense_Mutation p.A699D 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 144442706 144442706 G A SMARCA5 Missense_Mutation p.R126Q 0.27 tolerated(0.11) benign(0.071) TCGA-AA-A00N-01 4 145032505 145032505 C A GYPA 3'UTR 0.06 TCGA-AA-A00N-01 4 145039877 145039877 G T GYPA Missense_Mutation p.F87L 0.18 deleterious(0.04) benign(0.034) TCGA-AA-A00N-01 4 146065474 146065474 C T OTUD4 Missense_Mutation p.R447Q 0.17 tolerated(0.57) benign(0.184) TCGA-AA-A00N-01 4 146575224 146575224 C T MMAA Nonsense_Mutation p.R300* 0.18 TCGA-AA-A00N-01 4 146695710 146695710 G A ZNF827 Silent p.F936F 0.28 TCGA-AA-A00N-01 4 147561640 147561640 T C POU4F2 Missense_Mutation p.S304P 0.24 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 4 149002331 149002331 A C NR3C2 3'UTR 0.46 TCGA-AA-A00N-01 4 149073677 149073677 G A NR3C2 Missense_Mutation p.S818L 0.25 deleterious(0.02) possibly_damaging(0.832) TCGA-AA-A00N-01 4 151504537 151504537 C T MAB21L2 Missense_Mutation p.A119V 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A00N-01 4 151520230 151520230 C T LRBA Missense_Mutation p.R1992Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 4 151773586 151773586 C T LRBA Silent p.E1092E 0.18 TCGA-AA-A00N-01 4 151849715 151849715 C T LRBA Missense_Mutation p.E168K 0.09 deleterious(0) benign(0.224) TCGA-AA-A00N-01 4 152507864 152507864 G A FAM160A1 Nonsense_Mutation p.W268* 0.19 TCGA-AA-A00N-01 4 152626365 152626365 C T PET112 Missense_Mutation p.E312K 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 15341688 15341688 T G C1QTNF7 5'UTR 0.22 TCGA-AA-A00N-01 4 153691110 153691110 T C TIGD4 Silent p.T349T 0.17 TCGA-AA-A00N-01 4 153691349 153691349 G A TIGD4 Nonsense_Mutation p.R270* 0.18 TCGA-AA-A00N-01 4 153692523 153692523 C A TIGD4 5'UTR 0.23 TCGA-AA-A00N-01 4 153809304 153809304 C T ARFIP1 Missense_Mutation p.R271C 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 153881906 153881906 C T FHDC1 Missense_Mutation p.R254W 0.08 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 153896981 153896981 C T FHDC1 Silent p.G846G 0.20 TCGA-AA-A00N-01 4 15444216 15444216 C T C1QTNF7 Silent p.F228F 0.30 TCGA-AA-A00N-01 4 155156950 155156950 C T DCHS2 Missense_Mutation p.D2497N 0.12 tolerated(0.07) benign(0.03) TCGA-AA-A00N-01 4 155156971 155156971 T G DCHS2 Missense_Mutation p.K2490Q 0.22 deleterious(0.05) benign(0.045) TCGA-AA-A00N-01 4 155157405 155157405 G A DCHS2 Missense_Mutation p.P2345L 0.17 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 4 155191073 155191073 G T DCHS2 Missense_Mutation p.L1731I 0.26 deleterious(0.01) benign(0.253) TCGA-AA-A00N-01 4 155219327 155219327 G T DCHS2 Missense_Mutation p.L1592I 0.17 tolerated(0.2) benign(0.037) TCGA-AA-A00N-01 4 155250672 155250672 A C DCHS2 Intron 0.09 TCGA-AA-A00N-01 4 155256152 155256152 C T DCHS2 Missense_Mutation p.D362N 0.12 tolerated(0.29) benign(0.01) TCGA-AA-A00N-01 4 155383 155383 G T ZNF718 RNA 0.30 TCGA-AA-A00N-01 4 155505679 155505679 C T FGA Missense_Mutation p.G733E 0.21 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 4 155507020 155507020 C T FGA Missense_Mutation p.D521N 0.11 tolerated(0.14) benign(0.002) TCGA-AA-A00N-01 4 15581669 15581669 C T CC2D2A Missense_Mutation p.R1284C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 155819 155819 T C ZNF718 RNA 0.24 TCGA-AA-A00N-01 4 156135924 156135924 C T NPY2R Missense_Mutation p.A278V 0.31 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 4 15638154 15638154 C T FBXL5 Silent p.S243S 0.30 TCGA-AA-A00N-01 4 156632157 156632157 G A GUCY1A3 Silent p.S280S 0.18 TCGA-AA-A00N-01 4 156634337 156634337 G T GUCY1A3 Missense_Mutation p.D392Y 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-AA-A00N-01 4 156716538 156716538 C T GUCY1B3 Missense_Mutation p.R258C 0.09 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 4 156721045 156721045 G A GUCY1B3 Missense_Mutation p.D332N 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A00N-01 4 156752999 156752999 G A ASIC5 Missense_Mutation p.A435V 0.19 deleterious(0.02) possibly_damaging(0.884) TCGA-AA-A00N-01 4 15690973 15690973 C T FAM200B 3'Flank 0.15 TCGA-AA-A00N-01 4 15691351 15691351 G C FAM200B 3'Flank 0.21 TCGA-AA-A00N-01 4 158284078 158284078 G A GRIA2 Missense_Mutation p.R845Q 0.15 deleterious(0.03) possibly_damaging(0.723) TCGA-AA-A00N-01 4 159573230 159573230 C T RXFP1 3'UTR 0.23 TCGA-AA-A00N-01 4 159782858 159782858 G T FNIP2 Missense_Mutation p.E465D 0.17 tolerated(0.13) benign(0.041) TCGA-AA-A00N-01 4 15982072 15982072 C T PROM1 Missense_Mutation p.R821Q 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A00N-01 4 16014922 16014922 G A PROM1 Missense_Mutation p.R373C 0.18 deleterious(0.01) benign(0.05) TCGA-AA-A00N-01 4 160243587 160243587 C T RAPGEF2 Silent p.F153F 0.06 TCGA-AA-A00N-01 4 164272751 164272751 T C NPY5R Silent p.C442C 0.19 TCGA-AA-A00N-01 4 165891161 165891161 T G TRIM61 5'UTR 0.12 TCGA-AA-A00N-01 4 165962541 165962541 T G TRIM60 Silent p.T439T 0.28 TCGA-AA-A00N-01 4 166385683 166385683 G A CPE Missense_Mutation p.R150H 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 166388945 166388945 G A CPE Missense_Mutation p.E204K 0.31 tolerated(0.61) benign(0.192) TCGA-AA-A00N-01 4 166929152 166929152 G T TLL1 Missense_Mutation p.R290I 0.13 tolerated(0.08) benign(0.001) TCGA-AA-A00N-01 4 166986903 166986903 C T TLL1 Silent p.F692F 0.11 TCGA-AA-A00N-01 4 167020471 167020471 T G TLL1 Missense_Mutation p.L900R 0.11 deleterious(0) probably_damaging(0.983) TCGA-AA-A00N-01 4 167020625 167020625 C A TLL1 Silent p.L951L 0.19 TCGA-AA-A00N-01 4 167663158 167663158 C A SPOCK3 Missense_Mutation p.K331N 0.21 deleterious(0) possibly_damaging(0.827) TCGA-AA-A00N-01 4 169173784 169173784 G T DDX60 Missense_Mutation p.T1194N 0.16 tolerated(0.21) benign(0.002) TCGA-AA-A00N-01 4 169911453 169911453 C T CBR4 Missense_Mutation p.D188N 0.20 tolerated(0.48) benign(0.001) TCGA-AA-A00N-01 4 170616794 170616794 C A CLCN3 Missense_Mutation p.S323Y 0.18 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 4 174450084 174450084 G A HAND2 Silent p.F119F 0.08 TCGA-AA-A00N-01 4 174450357 174450357 G A HAND2 Silent p.A28A 0.50 TCGA-AA-A00N-01 4 17528506 17528506 G A CLRN2 Missense_Mutation p.R167Q 0.06 deleterious(0.02) possibly_damaging(0.736) TCGA-AA-A00N-01 4 175604004 175604004 G A GLRA3 Silent p.L221L 0.21 TCGA-AA-A00N-01 4 175896635 175896635 A G ADAM29 5'UTR 0.20 TCGA-AA-A00N-01 4 176733389 176733389 C A GPM6A 5'UTR 0.26 TCGA-AA-A00N-01 4 17706700 17706700 C A FAM184B Missense_Mutation p.D434Y 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-AA-A00N-01 4 177071227 177071227 T C WDR17 Missense_Mutation p.L718P 0.06 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 4 177093644 177093644 C A WDR17 Missense_Mutation p.P1113H 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 4 177109284 177109284 A G SPATA4 Missense_Mutation p.V264A 0.23 tolerated(0.59) benign(0.004) TCGA-AA-A00N-01 4 177136836 177136836 C T ASB5 Missense_Mutation p.R302Q 0.07 deleterious(0.02) probably_damaging(0.975) TCGA-AA-A00N-01 4 17806388 17806388 G T DCAF16 5'UTR 0.29 TCGA-AA-A00N-01 4 17830003 17830003 G A NCAPG Missense_Mutation p.E586K 0.16 deleterious(0.02) benign(0.327) TCGA-AA-A00N-01 4 183268046 183268046 G A TENM3 Missense_Mutation p.D159N 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.822) TCGA-AA-A00N-01 4 183652272 183652272 C T TENM3 Missense_Mutation p.P983S 0.11 tolerated(0.16) possibly_damaging(0.857) TCGA-AA-A00N-01 4 183664526 183664526 C T TENM3 Missense_Mutation p.R1195W 0.16 deleterious(0) benign(0.257) TCGA-AA-A00N-01 4 183675727 183675727 G A TENM3 Missense_Mutation p.E1403K 0.32 deleterious(0.03) benign(0.021) TCGA-AA-A00N-01 4 183676246 183676246 C T TENM3 Nonsense_Mutation p.R1576* 0.19 TCGA-AA-A00N-01 4 183720952 183720952 C T TENM3 Silent p.I2516I 0.17 TCGA-AA-A00N-01 4 183960304 183960304 C A FAM92A1P2 RNA 0.15 TCGA-AA-A00N-01 4 184207189 184207189 C T WWC2 Missense_Mutation p.R1040C 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A00N-01 4 184615778 184615778 C T TRAPPC11 Missense_Mutation p.R844C 0.20 deleterious(0.02) possibly_damaging(0.815) TCGA-AA-A00N-01 4 185679022 185679022 G A ACSL1 Missense_Mutation p.A612V 0.15 deleterious(0.04) benign(0.301) TCGA-AA-A00N-01 4 185724635 185724635 T C ACSL1 Missense_Mutation p.M12V 0.23 tolerated_low_confidence(0.24) benign(0.001) TCGA-AA-A00N-01 4 186111665 186111665 G A KIAA1430 Missense_Mutation p.S229L 0.24 tolerated(0.34) benign(0.027) TCGA-AA-A00N-01 4 186284655 186284655 T C SNX25 3'UTR 0.21 TCGA-AA-A00N-01 4 186336373 186336373 T G UFSP2 Missense_Mutation p.K207T 0.20 tolerated(0.51) benign(0.001) TCGA-AA-A00N-01 4 186548027 186548027 G T SORBS2 Missense_Mutation p.S394Y 0.05 deleterious(0) possibly_damaging(0.807) TCGA-AA-A00N-01 4 187088351 187088351 G A FAM149A Missense_Mutation p.R437Q 0.19 tolerated(0.68) benign(0.079) TCGA-AA-A00N-01 4 187171545 187171545 C T KLKB1 Silent p.I249I 0.30 TCGA-AA-A00N-01 4 187178496 187178496 G T KLKB1 Nonsense_Mutation p.E568* 0.20 TCGA-AA-A00N-01 4 187510153 187510153 C T FAT1 Missense_Mutation p.E4454K 0.17 possibly_damaging(0.53) TCGA-AA-A00N-01 4 187517920 187517920 C T FAT1 Silent p.P4258P 0.09 TCGA-AA-A00N-01 4 189012499 189012499 C T TRIML2 3'UTR 0.21 TCGA-AA-A00N-01 4 189012656 189012656 G A TRIML2 Silent p.F345F 0.11 TCGA-AA-A00N-01 4 1952841 1952841 G A WHSC1 Missense_Mutation p.E642K 0.19 tolerated(0.2) benign(0.368) TCGA-AA-A00N-01 4 1978210 1978210 G A WHSC1 Silent p.T1210T 0.20 TCGA-AA-A00N-01 4 2073767 2073767 G T POLN 3'UTR 0.33 TCGA-AA-A00N-01 4 21950234 21950234 T G KCNIP4 Missense_Mutation p.E7D 0.15 tolerated_low_confidence(0.4) benign(0.005) TCGA-AA-A00N-01 4 2233755 2233755 C A HAUS3 Nonsense_Mutation p.E571* 0.21 TCGA-AA-A00N-01 4 2237971 2237971 A C HAUS3 Missense_Mutation p.L521R 0.12 deleterious(0) probably_damaging(0.952) TCGA-AA-A00N-01 4 22463423 22463423 C T GPR125 Missense_Mutation p.R113Q 0.27 deleterious(0.01) benign(0.284) TCGA-AA-A00N-01 4 22749269 22749269 C T GBA3 Nonsense_Mutation p.R213* 0.22 TCGA-AA-A00N-01 4 2306130 2306130 G A ZFYVE28 Missense_Mutation p.A646V 0.14 tolerated_low_confidence(0.08) benign(0.023) TCGA-AA-A00N-01 4 247524 247524 C T ZNF876P RNA 0.23 TCGA-AA-A00N-01 4 24839881 24839881 G A CCDC149 Missense_Mutation p.T129M 0.27 deleterious(0) probably_damaging(0.977) TCGA-AA-A00N-01 4 25390358 25390358 A C ANAPC4 Missense_Mutation p.I155L 0.21 deleterious(0.03) benign(0.365) TCGA-AA-A00N-01 4 25760685 25760685 A C SEL1L3 Missense_Mutation p.F987L 0.21 tolerated(0.17) benign(0.109) TCGA-AA-A00N-01 4 265417 265417 C A ZNF732 Missense_Mutation p.R410I 0.17 tolerated(0.59) possibly_damaging(0.638) TCGA-AA-A00N-01 4 266135 266135 C A ZNF732 Nonsense_Mutation p.E171* 0.21 TCGA-AA-A00N-01 4 2749425 2749425 C T TNIP2 Missense_Mutation p.R175Q 0.20 tolerated(0.21) benign(0.007) TCGA-AA-A00N-01 4 2824692 2824692 G A SH3BP2 Missense_Mutation p.R113H 0.19 tolerated(0.15) possibly_damaging(0.799) TCGA-AA-A00N-01 4 289843 289843 C A ZNF732 Missense_Mutation p.E35D 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-AA-A00N-01 4 2959395 2959395 C A NOP14 Nonsense_Mutation p.E90* 0.23 TCGA-AA-A00N-01 4 3015500 3015500 A G GRK4 Missense_Mutation p.E229G 0.21 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 4 30723575 30723575 C T PCDH7 Silent p.I177I 0.18 TCGA-AA-A00N-01 4 30724437 30724437 G A PCDH7 Missense_Mutation p.D465N 0.24 deleterious(0) benign(0.354) TCGA-AA-A00N-01 4 30724947 30724947 A G PCDH7 Missense_Mutation p.N635D 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 4 3101035 3101035 G A HTT Missense_Mutation p.A128T 0.17 benign(0.16) TCGA-AA-A00N-01 4 3132048 3132048 T C HTT Silent p.H628H 0.18 TCGA-AA-A00N-01 4 3182271 3182271 G A HTT Missense_Mutation p.D1548N 0.19 probably_damaging(1) TCGA-AA-A00N-01 4 3430239 3430239 C T RGS12 Intron 0.19 TCGA-AA-A00N-01 4 3430378 3430378 G T RGS12 Nonsense_Mutation p.E1169* 0.26 TCGA-AA-A00N-01 4 36296578 36296578 T C DTHD1 Silent p.D395D 0.23 TCGA-AA-A00N-01 4 37446417 37446417 A G KIAA1239 Missense_Mutation p.D936G 0.24 tolerated(0.31) benign(0.119) TCGA-AA-A00N-01 4 3768995 3768995 C T ADRA2C Missense_Mutation p.A221V 0.10 tolerated(0.05) possibly_damaging(0.771) TCGA-AA-A00N-01 4 3769468 3769468 C T ADRA2C Missense_Mutation p.R379C 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 37846147 37846147 G A PGM2 Silent p.P294P 0.20 TCGA-AA-A00N-01 4 38916686 38916686 G A FAM114A1 Missense_Mutation p.E313K 0.17 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 4 38972710 38972710 G A TMEM156 Missense_Mutation p.P291S 0.22 tolerated(0.14) benign(0.095) TCGA-AA-A00N-01 4 39083717 39083717 C T KLHL5 Missense_Mutation p.R326C 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 39310509 39310509 C A RFC1 Missense_Mutation p.K544N 0.19 tolerated(0.1) benign(0.028) TCGA-AA-A00N-01 4 39436005 39436005 T G KLB Missense_Mutation p.I334S 0.25 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 4 39436111 39436111 C A KLB Missense_Mutation p.F369L 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 4 39448472 39448472 A G KLB Missense_Mutation p.Y709C 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 4 39466706 39466706 C A LIAS Missense_Mutation p.S145Y 0.23 deleterious(0) possibly_damaging(0.734) TCGA-AA-A00N-01 4 39871073 39871073 C T PDS5A Missense_Mutation p.E816K 0.19 tolerated(0.99) benign(0.002) TCGA-AA-A00N-01 4 40122474 40122474 A C N4BP2 Missense_Mutation p.N915H 0.10 deleterious(0.05) possibly_damaging(0.778) TCGA-AA-A00N-01 4 41748139 41748139 C T PHOX2B Silent p.A210A 0.30 TCGA-AA-A00N-01 4 41984123 41984123 G A DCAF4L1 Missense_Mutation p.R105Q 0.20 tolerated(0.33) benign(0.006) TCGA-AA-A00N-01 4 41984806 41984806 G A DCAF4L1 Missense_Mutation p.G333S 0.24 deleterious(0) possibly_damaging(0.864) TCGA-AA-A00N-01 4 419964 419964 G A ABCA11P RNA 0.22 TCGA-AA-A00N-01 4 420697 420697 C T ABCA11P RNA 0.19 TCGA-AA-A00N-01 4 42088117 42088117 C T SLC30A9 Nonsense_Mutation p.R561* 0.21 TCGA-AA-A00N-01 4 42145601 42145601 C T BEND4 Missense_Mutation p.E300K 0.07 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-AA-A00N-01 4 42414957 42414957 C T ATP8A1 Silent p.T1157T 0.21 TCGA-AA-A00N-01 4 4248045 4248046 - T TMEM128 Frame_Shift_Ins p.E18Gfs*8 0.19 TCGA-AA-A00N-01 4 42618091 42618091 C T ATP8A1 Missense_Mutation p.R123Q 0.47 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 4 42627654 42627654 A C ATP8A1 Missense_Mutation p.F81V 0.06 deleterious(0) probably_damaging(0.968) TCGA-AA-A00N-01 4 435938 435938 T G ZNF721 Missense_Mutation p.K773T 0.25 tolerated(0.08) benign(0.139) TCGA-AA-A00N-01 4 44700817 44700817 C T GUF1 3'UTR 0.17 TCGA-AA-A00N-01 4 44704982 44704982 A C GNPDA2 3'UTR 0.22 TCGA-AA-A00N-01 4 46060363 46060363 A C GABRG1 Missense_Mutation p.F263V 0.18 tolerated(0.08) possibly_damaging(0.474) TCGA-AA-A00N-01 4 46314713 46314713 G T GABRA2 Missense_Mutation p.F92L 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 47033680 47033680 A G GABRB1 Silent p.V4V 0.15 TCGA-AA-A00N-01 4 47462282 47462282 C T COMMD8 Missense_Mutation p.R34Q 0.28 tolerated(0.2) benign(0.243) TCGA-AA-A00N-01 4 47560189 47560189 G T ATP10D Missense_Mutation p.R778I 0.08 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 4 47788759 47788759 T C CORIN Missense_Mutation p.Q131R 0.20 tolerated(0.17) benign(0.001) TCGA-AA-A00N-01 4 47857108 47857108 T G NFXL1 Missense_Mutation p.K797Q 0.25 deleterious(0.04) possibly_damaging(0.84) TCGA-AA-A00N-01 4 47912845 47912845 C T NFXL1 Silent p.Q134Q 0.16 TCGA-AA-A00N-01 4 47912882 47912882 T C NFXL1 Missense_Mutation p.K122R 0.27 tolerated(0.34) benign(0.002) TCGA-AA-A00N-01 4 47954701 47954701 C A CNGA1 Missense_Mutation p.K75N 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A00N-01 4 48592846 48592846 C A FRYL Missense_Mutation p.R446I 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 4 48608490 48608490 C T FRYL Missense_Mutation p.V236I 0.30 tolerated(0.75) probably_damaging(0.945) TCGA-AA-A00N-01 4 5053525 5053525 G A STK32B 5'UTR 0.12 TCGA-AA-A00N-01 4 52894959 52894959 A C SGCB Silent p.T186T 0.09 TCGA-AA-A00N-01 4 53492311 53492311 T G USP46 Missense_Mutation p.Q145H 0.04 tolerated(0.08) possibly_damaging(0.726) TCGA-AA-A00N-01 4 54876272 54876272 C T CHIC2 Missense_Mutation p.R163Q 0.07 tolerated(0.2) benign(0.029) TCGA-AA-A00N-01 4 55129918 55129918 G A PDGFRA Missense_Mutation p.R151H 0.23 deleterious(0.04) benign(0.028) TCGA-AA-A00N-01 4 55133466 55133466 G A PDGFRA Missense_Mutation p.G257D 0.30 tolerated(0.62) probably_damaging(0.983) TCGA-AA-A00N-01 4 55141007 55141007 G T PDGFRA Splice_Site p.X552_splice 0.15 TCGA-AA-A00N-01 4 55152109 55152109 G A PDGFRA Silent p.S847S 0.08 TCGA-AA-A00N-01 4 55575684 55575684 G A KIT Missense_Mutation p.A404T 0.26 tolerated(1) benign(0) TCGA-AA-A00N-01 4 5564656 5564656 C A EVC2 Missense_Mutation p.E1282D 0.28 tolerated(0.07) possibly_damaging(0.601) TCGA-AA-A00N-01 4 55981091 55981091 T G KDR Missense_Mutation p.K203T 0.29 tolerated(0.78) benign(0.013) TCGA-AA-A00N-01 4 55987310 55987310 C A KDR Missense_Mutation p.D39Y 0.27 deleterious(0.01) possibly_damaging(0.594) TCGA-AA-A00N-01 4 5620244 5620244 G A EVC2 Silent p.F889F 0.16 TCGA-AA-A00N-01 4 56315025 56315025 G A CLOCK Missense_Mutation p.S487F 0.25 deleterious(0.01) possibly_damaging(0.866) TCGA-AA-A00N-01 4 56325145 56325145 T C CLOCK Missense_Mutation p.T236A 0.08 tolerated(1) benign(0.001) TCGA-AA-A00N-01 4 56325370 56325370 C T CLOCK Silent p.E206E 0.25 TCGA-AA-A00N-01 4 56865734 56865734 G A CEP135 Missense_Mutation p.E735K 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 4 57219662 57219662 T G AASDH Missense_Mutation p.E495A 0.24 tolerated(0.41) benign(0.017) TCGA-AA-A00N-01 4 57349351 57349351 C T SRP72 Missense_Mutation p.A291V 0.21 tolerated(0.24) benign(0.122) TCGA-AA-A00N-01 4 57514744 57514744 A G HOPX 3'UTR 0.11 TCGA-AA-A00N-01 4 57881760 57881760 A C POLR2B Missense_Mutation p.Q631H 0.20 tolerated(0.08) benign(0.396) TCGA-AA-A00N-01 4 57897136 57897136 G A POLR2B Silent p.P1169P 0.20 TCGA-AA-A00N-01 4 5837643 5837643 G A CRMP1 Missense_Mutation p.S541L 0.24 tolerated(0.71) possibly_damaging(0.866) TCGA-AA-A00N-01 4 62758404 62758404 G T LPHN3 Missense_Mutation p.G436V 0.27 tolerated(0.32) benign(0.002) TCGA-AA-A00N-01 4 62910205 62910205 G A LPHN3 Missense_Mutation p.R1183Q 0.17 deleterious(0.02) probably_damaging(0.964) TCGA-AA-A00N-01 4 65145784 65145784 C A TECRL 3'UTR 0.14 TCGA-AA-A00N-01 4 673721 673721 A G MYL5 Missense_Mutation p.D69G 0.22 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 4 68358708 68358708 G A CENPC Silent p.F766F 0.21 TCGA-AA-A00N-01 4 6843914 6843914 C T KIAA0232 Nonsense_Mutation p.R118* 0.27 TCGA-AA-A00N-01 4 68441165 68441165 G T STAP1 Missense_Mutation p.K85N 0.32 tolerated(0.48) benign(0.011) TCGA-AA-A00N-01 4 68490770 68490770 C T UBA6 Missense_Mutation p.R885H 0.18 tolerated(0.12) probably_damaging(0.985) TCGA-AA-A00N-01 4 68619925 68619925 G T GNRHR Missense_Mutation p.F43L 0.08 tolerated(0.35) possibly_damaging(0.46) TCGA-AA-A00N-01 4 69057243 69057243 C T TMPRSS11BNL Splice_Site p.X42_splice 0.19 TCGA-AA-A00N-01 4 69094992 69094992 C A TMPRSS11B Missense_Mutation p.G310V 0.17 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 4 69202840 69202840 T C YTHDC1 Missense_Mutation p.D263G 0.20 deleterious(0.01) possibly_damaging(0.607) TCGA-AA-A00N-01 4 70066279 70066279 G T UGT2B11 Missense_Mutation p.S490Y 0.26 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 4 7006648 7006648 G A TBC1D14 Missense_Mutation p.E450K 0.21 tolerated(0.08) probably_damaging(0.915) TCGA-AA-A00N-01 4 70080140 70080140 G A UGT2B11 Nonsense_Mutation p.R101* 0.19 TCGA-AA-A00N-01 4 7016278 7016278 T G TBC1D14 Missense_Mutation p.I584S 0.07 deleterious(0) probably_damaging(0.942) TCGA-AA-A00N-01 4 7032142 7032142 C T TBC1D14 3'UTR 0.15 TCGA-AA-A00N-01 4 70346269 70346269 C A UGT2B4 3'UTR 0.36 TCGA-AA-A00N-01 4 7043265 7043265 G A CCDC96 Silent p.I467I 0.09 TCGA-AA-A00N-01 4 70512759 70512759 C T UGT2A1 Missense_Mutation p.D202N 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A00N-01 4 70802288 70802288 G T CSN1S1 Missense_Mutation p.R53I 0.17 deleterious(0.01) possibly_damaging(0.883) TCGA-AA-A00N-01 4 70823463 70823463 G A CSN2 Silent p.F68F 0.14 TCGA-AA-A00N-01 4 71275490 71275490 G A PROL1 Missense_Mutation p.A149T 0.18 tolerated_low_confidence(1) unknown(0) TCGA-AA-A00N-01 4 71398237 71398237 C A AMTN 3'UTR 0.23 TCGA-AA-A00N-01 4 71527815 71527815 C T IGJ Missense_Mutation p.R61Q 0.20 tolerated(0.12) benign(0.424) TCGA-AA-A00N-01 4 71555757 71555757 C T UTP3 Missense_Mutation p.R455C 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 4 71768180 71768180 T G MOB1B 5'UTR 0.11 TCGA-AA-A00N-01 4 71824642 71824642 T C MOB1B Silent p.G27G 0.18 TCGA-AA-A00N-01 4 72897898 72897898 G A NPFFR2 Missense_Mutation p.D94N 0.07 tolerated_low_confidence(1) benign(0) TCGA-AA-A00N-01 4 73148754 73148754 G A ADAMTS3 3'UTR 0.28 TCGA-AA-A00N-01 4 74000848 74000848 C A ANKRD17 Missense_Mutation p.D1074Y 0.18 probably_damaging(0.998) TCGA-AA-A00N-01 4 74279174 74279174 C T ALB Missense_Mutation p.S294L 0.31 tolerated(0.31) benign(0.048) TCGA-AA-A00N-01 4 74282008 74282008 G A ALB Silent p.Q409Q 0.20 TCGA-AA-A00N-01 4 7435020 7435020 C A PSAPL1 3'UTR 0.21 TCGA-AA-A00N-01 4 7436034 7436034 G T PSAPL1 Silent p.V191V 0.27 TCGA-AA-A00N-01 4 74736401 74736401 T G CXCL1 3'UTR 0.40 TCGA-AA-A00N-01 4 75681101 75681101 G A BTC Silent p.R83R 0.16 TCGA-AA-A00N-01 4 76570885 76570885 G A G3BP2 Missense_Mutation p.P393L 0.18 deleterious(0) possibly_damaging(0.577) TCGA-AA-A00N-01 4 76708221 76708221 C T USO1 Missense_Mutation p.R290C 0.16 deleterious(0) possibly_damaging(0.773) TCGA-AA-A00N-01 4 76721583 76721583 C T USO1 Missense_Mutation p.S557L 0.21 deleterious(0.03) benign(0.004) TCGA-AA-A00N-01 4 76722346 76722346 G A USO1 Missense_Mutation p.R669Q 0.19 tolerated(0.08) possibly_damaging(0.592) TCGA-AA-A00N-01 4 76785646 76785646 C T PPEF2 Missense_Mutation p.R652Q 0.30 deleterious(0.03) benign(0.067) TCGA-AA-A00N-01 4 76788552 76788552 G A PPEF2 Missense_Mutation p.S557L 0.10 deleterious(0) possibly_damaging(0.564) TCGA-AA-A00N-01 4 7691259 7691259 A G SORCS2 Missense_Mutation p.Y512C 0.28 deleterious(0) probably_damaging(0.95) TCGA-AA-A00N-01 4 77660971 77660971 A G SHROOM3 Missense_Mutation p.T549A 0.17 tolerated(1) benign(0.001) TCGA-AA-A00N-01 4 77818776 77818776 C A SOWAHB Missense_Mutation p.R76I 0.09 deleterious(0) possibly_damaging(0.695) TCGA-AA-A00N-01 4 7811444 7811444 C T AFAP1 Silent p.S317S 0.08 TCGA-AA-A00N-01 4 78528951 78528951 C A CXCL13 Silent p.I53I 0.20 TCGA-AA-A00N-01 4 78804425 78804425 A C MRPL1 Missense_Mutation p.K58T 0.18 tolerated(0.05) probably_damaging(0.96) TCGA-AA-A00N-01 4 79367939 79367939 C T FRAS1 Missense_Mutation p.S1972L 0.09 benign(0.009) TCGA-AA-A00N-01 4 79428588 79428588 C A FRAS1 Silent p.I3110I 0.31 TCGA-AA-A00N-01 4 79832683 79832683 G A BMP2K Silent p.G994G 0.32 TCGA-AA-A00N-01 4 79841702 79841702 T C PAQR3 Silent p.S309S 0.20 TCGA-AA-A00N-01 4 80328947 80328947 G A GK2 Silent p.F136F 0.18 TCGA-AA-A00N-01 4 8082514 8082514 C T ABLIM2 Missense_Mutation p.G157D 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 80976610 80976610 T G ANTXR2 Missense_Mutation p.Q130H 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 4 81123091 81123091 G A PRDM8 Missense_Mutation p.E159K 0.06 tolerated(0.11) benign(0.052) TCGA-AA-A00N-01 4 81124671 81124671 G T PRDM8 Missense_Mutation p.M685I 0.29 deleterious(0) probably_damaging(0.963) TCGA-AA-A00N-01 4 82010870 82010870 C A PRKG2 Missense_Mutation p.D761Y 0.15 deleterious(0) probably_damaging(0.982) TCGA-AA-A00N-01 4 82096077 82096077 A G PRKG2 Silent p.N166N 0.18 TCGA-AA-A00N-01 4 82378774 82378774 C A RASGEF1B Missense_Mutation p.R60I 0.28 deleterious(0.01) benign(0.296) TCGA-AA-A00N-01 4 83350464 83350464 C T HNRNPDL Missense_Mutation p.S127N 0.23 tolerated_low_confidence(0.08) benign(0.018) TCGA-AA-A00N-01 4 83582002 83582002 C T SCD5 Intron 0.26 TCGA-AA-A00N-01 4 83602012 83602012 C T SCD5 Silent p.E139E 0.13 TCGA-AA-A00N-01 4 83740184 83740184 C A SEC31A 3'UTR 0.18 TCGA-AA-A00N-01 4 83839359 83839359 G A THAP9 Missense_Mutation p.R665Q 0.26 tolerated(0.19) benign(0.013) TCGA-AA-A00N-01 4 84347185 84347185 A C HELQ Missense_Mutation p.F913V 0.25 tolerated(0.08) benign(0.011) TCGA-AA-A00N-01 4 84350812 84350812 G T HELQ Missense_Mutation p.L795I 0.15 tolerated(0.14) benign(0.141) TCGA-AA-A00N-01 4 84393399 84393399 C A FAM175A Missense_Mutation p.K86N 0.24 tolerated(0.16) benign(0.251) TCGA-AA-A00N-01 4 845593 845593 C T GAK Silent p.S1151S 0.26 TCGA-AA-A00N-01 4 8470041 8470041 G A TRMT44 Missense_Mutation p.R632Q 0.21 tolerated(0.71) benign(0.003) TCGA-AA-A00N-01 4 8470231 8470231 C A TRMT44 Intron 0.50 TCGA-AA-A00N-01 4 85600239 85600239 C A WDFY3 Missense_Mutation p.G3327V 0.25 deleterious(0.03) benign(0.142) TCGA-AA-A00N-01 4 85711000 85711000 C T WDFY3 Missense_Mutation p.R1183Q 0.22 tolerated(0.37) benign(0.075) TCGA-AA-A00N-01 4 86491748 86491748 G T ARHGAP24 Missense_Mutation p.Q18H 0.31 tolerated(0.11) benign(0.001) TCGA-AA-A00N-01 4 87614800 87614800 C T PTPN13 Nonsense_Mutation p.R203* 0.30 TCGA-AA-A00N-01 4 87720274 87720274 A G PTPN13 Missense_Mutation p.E2146G 0.20 tolerated(0.28) benign(0.149) TCGA-AA-A00N-01 4 87724918 87724918 C T PTPN13 Missense_Mutation p.P2193S 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 4 87728979 87728979 C T PTPN13 Nonsense_Mutation p.R2343* 0.20 TCGA-AA-A00N-01 4 88052295 88052295 G T AFF1 Nonsense_Mutation p.G1009* 0.33 TCGA-AA-A00N-01 4 88056811 88056811 A G AFF1 Silent p.R1205R 0.05 TCGA-AA-A00N-01 4 88106626 88106626 C T KLHL8 Missense_Mutation p.R181Q 0.10 tolerated(0.08) probably_damaging(0.965) TCGA-AA-A00N-01 4 88226317 88226317 C T HSD17B13 3'UTR 0.14 TCGA-AA-A00N-01 4 88231412 88231412 G T HSD17B13 Silent p.I265I 0.25 TCGA-AA-A00N-01 4 88378999 88378999 G A NUDT9 Silent p.E293E 0.19 TCGA-AA-A00N-01 4 88536405 88536405 G A DSPP Missense_Mutation p.S864N 0.21 unknown(0) TCGA-AA-A00N-01 4 88537823 88537823 G A DSPP 3'UTR 0.30 TCGA-AA-A00N-01 4 88732625 88732625 G A IBSP Missense_Mutation p.E173K 0.17 tolerated(0.13) benign(0.12) TCGA-AA-A00N-01 4 88767365 88767365 A C MEPE Missense_Mutation p.N449H 0.22 tolerated(0.09) benign(0.037) TCGA-AA-A00N-01 4 88967960 88967960 C T PKD2 Missense_Mutation p.R496C 0.30 deleterious(0.02) probably_damaging(0.939) TCGA-AA-A00N-01 4 89317276 89317276 C T HERC6 Missense_Mutation p.S290L 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 89361068 89361068 C T HERC6 Silent p.V866V 0.21 TCGA-AA-A00N-01 4 89361141 89361141 T G HERC6 Missense_Mutation p.F891V 0.07 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 4 89859293 89859293 A G FAM13A Silent p.Y235Y 0.15 TCGA-AA-A00N-01 4 90035302 90035302 G T TIGD2 Nonsense_Mutation p.E393* 0.25 TCGA-AA-A00N-01 4 90856092 90856092 G A MMRN1 Missense_Mutation p.E421K 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 4 93225881 93225881 C T GRID2 Missense_Mutation p.S25L 0.29 tolerated(0.36) possibly_damaging(0.732) TCGA-AA-A00N-01 4 94750551 94750551 G A ATOH1 Silent p.K158K 0.28 TCGA-AA-A00N-01 4 95129573 95129573 C T SMARCAD1 Missense_Mutation p.R10C 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-A00N-01 4 95508214 95508214 G A PDLIM5 Intron 0.20 TCGA-AA-A00N-01 4 96036890 96036890 G A BMPR1B Missense_Mutation p.E131K 0.24 deleterious(0.02) benign(0.084) TCGA-AA-A00N-01 4 96069909 96069909 G T BMPR1B Nonsense_Mutation p.E393* 0.22 TCGA-AA-A00N-01 4 96069988 96069988 G T BMPR1B Missense_Mutation p.R419I 0.25 tolerated(0.47) benign(0.322) TCGA-AA-A00N-01 4 96090330 96090330 C T UNC5C 3'UTR 0.40 TCGA-AA-A00N-01 4 96123989 96123989 C A UNC5C Missense_Mutation p.A677S 0.21 tolerated(0.58) benign(0.002) TCGA-AA-A00N-01 4 96762199 96762199 C T PDHA2 Missense_Mutation p.R300C 0.21 deleterious(0.02) possibly_damaging(0.538) TCGA-AA-A00N-01 4 96762328 96762328 G T PDHA2 Nonsense_Mutation p.E343* 0.16 TCGA-AA-A00N-01 4 9785039 9785039 G T DRD5 Missense_Mutation p.E462D 0.18 tolerated(0.42) benign(0.011) TCGA-AA-A00N-01 4 9785253 9785253 G T DRD5 3'UTR 0.22 TCGA-AA-A00N-01 4 99823131 99823131 T G EIF4E Missense_Mutation p.E7D 0.06 tolerated_low_confidence(0.24) probably_damaging(0.979) TCGA-AA-A00N-01 5 100231433 100231433 C T ST8SIA4 Missense_Mutation p.R57Q 0.20 benign(0) TCGA-AA-A00N-01 5 101585439 101585439 G A SLCO4C1 Missense_Mutation p.S508L 0.24 tolerated(1) benign(0.002) TCGA-AA-A00N-01 5 101735295 101735295 C A SLCO6A1 Missense_Mutation p.G593V 0.24 tolerated(0.41) benign(0.046) TCGA-AA-A00N-01 5 102295581 102295581 G A PAM Missense_Mutation p.G303D 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 5 102519013 102519013 C T PPIP5K2 Missense_Mutation p.R1001C 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.854) TCGA-AA-A00N-01 5 102611630 102611630 G A C5orf30 Missense_Mutation p.D4N 0.18 tolerated_low_confidence(0.06) probably_damaging(0.99) TCGA-AA-A00N-01 5 10280506 10280506 T C CMBL 3'UTR 0.23 TCGA-AA-A00N-01 5 110411906 110411906 T C TSLP 3'Flank 0.23 TCGA-AA-A00N-01 5 110835763 110835763 G A STARD4 Nonsense_Mutation p.R147* 0.12 TCGA-AA-A00N-01 5 11117571 11117571 G A CTNND2 Silent p.I756I 0.30 TCGA-AA-A00N-01 5 111600648 111600648 G A EPB41L4A Missense_Mutation p.P167S 0.21 tolerated(0.17) probably_damaging(0.993) TCGA-AA-A00N-01 5 112175133 112175133 C A APC Nonsense_Mutation p.S1281* 0.26 TCGA-AA-A00N-01 5 112175513 112175513 G T APC Nonsense_Mutation p.E1408* 0.28 TCGA-AA-A00N-01 5 112177866 112177866 A C APC Missense_Mutation p.K2192T 0.19 probably_damaging(0.998) TCGA-AA-A00N-01 5 112179692 112179692 C T APC Missense_Mutation p.R2801W 0.06 probably_damaging(1) TCGA-AA-A00N-01 5 112437618 112437618 G A MCC Missense_Mutation p.L406F 0.24 tolerated(0.19) probably_damaging(0.994) TCGA-AA-A00N-01 5 112676388 112676388 G T MCC Missense_Mutation p.S152Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-AA-A00N-01 5 112720717 112720717 C A MCC Missense_Mutation p.K121N 0.20 tolerated_low_confidence(0.08) probably_damaging(0.978) TCGA-AA-A00N-01 5 112769470 112769470 C T TSSK1B Missense_Mutation p.G356E 0.21 tolerated_low_confidence(0.17) benign(0) TCGA-AA-A00N-01 5 112901606 112901606 G A YTHDC2 Missense_Mutation p.R911Q 0.20 deleterious(0.01) benign(0.222) TCGA-AA-A00N-01 5 112926876 112926876 C T YTHDC2 Nonsense_Mutation p.R1322* 0.07 TCGA-AA-A00N-01 5 113798788 113798788 G A KCNN2 Silent p.A348A 0.26 TCGA-AA-A00N-01 5 11385057 11385057 C T CTNND2 Silent p.S299S 0.15 TCGA-AA-A00N-01 5 114606915 114606915 C T CCDC112 Missense_Mutation p.E443K 0.23 deleterious(0.03) probably_damaging(0.982) TCGA-AA-A00N-01 5 115346501 115346501 A C AQPEP Missense_Mutation p.E719D 0.17 tolerated(0.16) possibly_damaging(0.524) TCGA-AA-A00N-01 5 118574725 118574725 C T DMXL1 Silent p.F2846F 0.09 TCGA-AA-A00N-01 5 118968538 118968538 G A FAM170A Missense_Mutation p.E56K 0.22 deleterious(0.04) benign(0.211) TCGA-AA-A00N-01 5 120021768 120021768 G A PRR16 Silent p.E70E 0.24 TCGA-AA-A00N-01 5 122495211 122495211 G A PRDM6 Silent p.S344S 0.16 TCGA-AA-A00N-01 5 122682231 122682231 T G CEP120 Missense_Mutation p.K981N 0.21 deleterious(0.04) benign(0.063) TCGA-AA-A00N-01 5 125695911 125695911 C T GRAMD3 5'UTR 0.17 TCGA-AA-A00N-01 5 125960353 125960353 G T PHAX Missense_Mutation p.M334I 0.27 tolerated(0.05) benign(0.007) TCGA-AA-A00N-01 5 127520166 127520166 T C SLC12A2 Silent p.D1136D 0.17 TCGA-AA-A00N-01 5 127873307 127873307 G A FBN2 5'UTR 0.14 TCGA-AA-A00N-01 5 128932344 128932344 G T ADAMTS19 Nonsense_Mutation p.E483* 0.26 TCGA-AA-A00N-01 5 129072824 129072824 G T ADAMTS19 Missense_Mutation p.K1179N 0.15 tolerated(0.08) probably_damaging(0.948) TCGA-AA-A00N-01 5 130846088 130846088 G A RAPGEF6 Nonsense_Mutation p.R242* 0.08 TCGA-AA-A00N-01 5 131602223 131602223 C T PDLIM4 Silent p.I104I 0.17 TCGA-AA-A00N-01 5 131657893 131657893 C G SLC22A4 Silent p.G223G 0.16 TCGA-AA-A00N-01 5 131705807 131705807 A G SLC22A5 Missense_Mutation p.H48R 0.18 deleterious(0) benign(0.209) TCGA-AA-A00N-01 5 131924481 131924481 G A RAD50 Missense_Mutation p.R385H 0.22 tolerated(0.12) benign(0.002) TCGA-AA-A00N-01 5 132018321 132018321 T C IL4 3'UTR 0.53 TCGA-AA-A00N-01 5 132046670 132046670 C A KIF3A Missense_Mutation p.E403D 0.27 tolerated(0.26) benign(0) TCGA-AA-A00N-01 5 133477985 133477985 G A TCF7 Missense_Mutation p.D249N 0.10 tolerated(0.07) probably_damaging(0.982) TCGA-AA-A00N-01 5 133643921 133643921 G A CDKL3 Silent p.C424C 0.26 TCGA-AA-A00N-01 5 133644137 133644137 C T CDKL3 Silent p.K352K 0.18 TCGA-AA-A00N-01 5 133726010 133726010 C T UBE2B Missense_Mutation p.S142L 0.24 tolerated(0.15) benign(0.006) TCGA-AA-A00N-01 5 134235320 134235320 G A TXNDC15 Missense_Mutation p.R343Q 0.21 tolerated(0.09) possibly_damaging(0.718) TCGA-AA-A00N-01 5 135207534 135207534 C A SLC25A48 Intron 0.26 TCGA-AA-A00N-01 5 135276973 135276973 C T FBXL21 RNA 0.21 TCGA-AA-A00N-01 5 137261613 137261613 G A PKD2L2 Missense_Mutation p.E556K 0.17 tolerated(0.15) benign(0.041) TCGA-AA-A00N-01 5 137424671 137424671 G A WNT8A Silent p.R141R 0.20 TCGA-AA-A00N-01 5 137518870 137518870 G A KIF20A Missense_Mutation p.R282Q 0.27 tolerated(0.59) benign(0.003) TCGA-AA-A00N-01 5 137528005 137528005 C A CDC23 Missense_Mutation p.K413N 0.17 tolerated(0.07) benign(0.259) TCGA-AA-A00N-01 5 137537104 137537104 G A CDC23 Missense_Mutation p.A150V 0.06 tolerated(0.49) benign(0.002) TCGA-AA-A00N-01 5 137761258 137761258 C T KDM3B Silent p.F1466F 0.20 TCGA-AA-A00N-01 5 13776640 13776640 T G DNAH5 Missense_Mutation p.K3094T 0.18 possibly_damaging(0.728) TCGA-AA-A00N-01 5 138240092 138240092 C T CTNNA1 Nonsense_Mutation p.R451* 0.22 TCGA-AA-A00N-01 5 138253547 138253547 C T CTNNA1 Silent p.V502V 0.20 TCGA-AA-A00N-01 5 138661140 138661140 C T MATR3 Silent p.I720I 0.15 TCGA-AA-A00N-01 5 138699457 138699457 G A PAIP2 5'UTR 0.08 TCGA-AA-A00N-01 5 138707800 138707800 G A SLC23A1 Silent p.I568I 0.13 TCGA-AA-A00N-01 5 138749871 138749871 A C DNAJC18 Missense_Mutation p.L348R 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 5 138760752 138760752 C T DNAJC18 Missense_Mutation p.R204Q 0.24 tolerated(0.21) benign(0.019) TCGA-AA-A00N-01 5 13876860 13876860 A G DNAH5 Missense_Mutation p.V1110A 0.26 benign(0.153) TCGA-AA-A00N-01 5 139062496 139062496 C T CXXC5 3'UTR 0.26 TCGA-AA-A00N-01 5 139222035 139222035 G T PSD2 Missense_Mutation p.K764N 0.18 deleterious(0) benign(0.063) TCGA-AA-A00N-01 5 139508089 139508089 C T IGIP Missense_Mutation p.R10C 0.23 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-AA-A00N-01 5 139908590 139908590 C A ANKHD1 Missense_Mutation p.S2020Y 0.12 probably_damaging(0.93) TCGA-AA-A00N-01 5 140032648 140032648 A C IK Missense_Mutation p.D108A 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-AA-A00N-01 5 140056457 140056457 G A HARS Nonsense_Mutation p.R326* 0.13 TCGA-AA-A00N-01 5 140062768 140062768 G A HARS Missense_Mutation p.R73C 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 5 140166325 140166325 G A PCDHA1 Silent p.S150S 0.19 TCGA-AA-A00N-01 5 140176175 140176175 G A PCDHA2 Silent p.V542V 0.23 TCGA-AA-A00N-01 5 140181345 140181345 A C PCDHA3 Missense_Mutation p.E188A 0.14 tolerated_low_confidence(0.16) benign(0.271) TCGA-AA-A00N-01 5 140181578 140181578 G A PCDHA3 Missense_Mutation p.A266T 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A00N-01 5 140187723 140187723 A C PCDHA4 Missense_Mutation p.E317D 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.497) TCGA-AA-A00N-01 5 140188642 140188642 G A PCDHA4 Missense_Mutation p.V624M 0.25 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-AA-A00N-01 5 140189143 140189143 G T PCDHA4 Nonsense_Mutation p.E791* 0.18 TCGA-AA-A00N-01 5 140207890 140207890 G A PCDHA6 Missense_Mutation p.E72K 0.09 tolerated_low_confidence(0.08) benign(0.015) TCGA-AA-A00N-01 5 140210045 140210045 A C PCDHA6 Missense_Mutation p.D790A 0.16 tolerated_low_confidence(0.18) benign(0.002) TCGA-AA-A00N-01 5 140216146 140216146 G A PCDHA7 Silent p.P726P 0.27 TCGA-AA-A00N-01 5 140221112 140221112 A C PCDHA8 Missense_Mutation p.K69T 0.20 deleterious_low_confidence(0.01) benign(0.409) TCGA-AA-A00N-01 5 140221633 140221633 G A PCDHA8 Missense_Mutation p.E243K 0.24 deleterious_low_confidence(0) benign(0.027) TCGA-AA-A00N-01 5 140221796 140221796 G A PCDHA8 Missense_Mutation p.R297Q 0.27 tolerated_low_confidence(0.11) benign(0) TCGA-AA-A00N-01 5 140236505 140236505 A C PCDHA10 Missense_Mutation p.K291T 0.27 tolerated_low_confidence(0.26) benign(0.023) TCGA-AA-A00N-01 5 140249070 140249070 G A PCDHA11 Missense_Mutation p.D128N 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-A00N-01 5 140250218 140250218 C T PCDHA11 Silent p.H510H 0.34 TCGA-AA-A00N-01 5 140255690 140255690 G A PCDHA12 Silent p.L211L 0.18 TCGA-AA-A00N-01 5 140255829 140255829 G A PCDHA12 Missense_Mutation p.D258N 0.21 deleterious_low_confidence(0.02) benign(0.018) TCGA-AA-A00N-01 5 140256961 140256961 G A PCDHA12 Missense_Mutation p.R635H 0.22 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-AA-A00N-01 5 140262934 140262934 G T PCDHA13 Nonsense_Mutation p.E361* 0.22 TCGA-AA-A00N-01 5 140263149 140263149 G A PCDHA13 Silent p.S432S 0.38 TCGA-AA-A00N-01 5 140263515 140263515 C T PCDHA13 Silent p.F554F 0.14 TCGA-AA-A00N-01 5 140348138 140348138 G A PCDHAC2 Missense_Mutation p.R596Q 0.20 deleterious(0.02) possibly_damaging(0.832) TCGA-AA-A00N-01 5 140481560 140481560 G A PCDHB3 Missense_Mutation p.D443N 0.16 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-AA-A00N-01 5 140481617 140481617 G A PCDHB3 Missense_Mutation p.E462K 0.26 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-AA-A00N-01 5 140482736 140482736 G T PCDHB3 3'UTR 0.18 TCGA-AA-A00N-01 5 140516715 140516715 G A PCDHB5 Missense_Mutation p.G567S 0.33 tolerated_low_confidence(0.06) benign(0.024) TCGA-AA-A00N-01 5 140532345 140532345 G T PCDHB6 3'UTR 0.16 TCGA-AA-A00N-01 5 140553608 140553608 G A PCDHB7 Missense_Mutation p.E398K 0.27 tolerated_low_confidence(0.54) benign(0.003) TCGA-AA-A00N-01 5 140555925 140555925 T G PCDHB7 3'UTR 0.09 TCGA-AA-A00N-01 5 140564642 140564642 T C PCDHB16 3'UTR 0.24 TCGA-AA-A00N-01 5 140572254 140572254 C T PCDHB10 Silent p.S43S 0.18 TCGA-AA-A00N-01 5 140589324 140589324 C T PCDHB12 Missense_Mutation p.S282F 0.09 tolerated_low_confidence(1) benign(0.06) TCGA-AA-A00N-01 5 140595315 140595315 G A PCDHB13 Silent p.A540A 0.31 TCGA-AA-A00N-01 5 140595819 140595819 C T PCDHB13 Silent p.F708F 0.16 TCGA-AA-A00N-01 5 140603650 140603650 C T PCDHB14 Silent p.Y191Y 0.20 TCGA-AA-A00N-01 5 140626471 140626471 C T PCDHB15 Missense_Mutation p.S442L 0.16 deleterious_low_confidence(0) benign(0.403) TCGA-AA-A00N-01 5 140711804 140711804 G A PCDHGA1 Missense_Mutation p.R518Q 0.28 tolerated_low_confidence(0.43) benign(0.06) TCGA-AA-A00N-01 5 140711898 140711898 C T PCDHGA1 Silent p.S549S 0.17 TCGA-AA-A00N-01 5 140724707 140724707 C T PCDHGA3 Silent p.I369I 0.23 TCGA-AA-A00N-01 5 140730217 140730217 C T PCDHGB1 Silent p.F130F 0.28 TCGA-AA-A00N-01 5 140730443 140730443 C T PCDHGB1 Missense_Mutation p.R206C 0.11 deleterious(0.02) possibly_damaging(0.901) TCGA-AA-A00N-01 5 140730942 140730942 C A PCDHGB1 Missense_Mutation p.S372Y 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 5 140734965 140734965 C T PCDHGA4 Silent p.I66I 0.14 TCGA-AA-A00N-01 5 140735654 140735654 C A PCDHGA4 Missense_Mutation p.S296Y 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.636) TCGA-AA-A00N-01 5 140741409 140741409 T G PCDHGB2 Silent p.P569P 0.18 TCGA-AA-A00N-01 5 140744763 140744763 C T PCDHGA5 Missense_Mutation p.S289L 0.31 tolerated_low_confidence(0.25) benign(0.075) TCGA-AA-A00N-01 5 140750343 140750343 G A PCDHGB3 Missense_Mutation p.D128N 0.14 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 5 140754055 140754055 G A PCDHGA6 Silent p.K135K 0.19 TCGA-AA-A00N-01 5 140754059 140754059 G T PCDHGA6 Nonsense_Mutation p.E137* 0.20 TCGA-AA-A00N-01 5 140763268 140763268 G A PCDHGA7 Missense_Mutation p.D268N 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A00N-01 5 140769153 140769153 G A PCDHGB4 Missense_Mutation p.D568N 0.19 deleterious(0.04) possibly_damaging(0.889) TCGA-AA-A00N-01 5 140769170 140769170 C T PCDHGB4 Silent p.F573F 0.21 TCGA-AA-A00N-01 5 140772914 140772914 C A PCDHGA8 Missense_Mutation p.F178L 0.20 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-AA-A00N-01 5 140773507 140773507 C A PCDHGA8 Missense_Mutation p.S376Y 0.16 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-AA-A00N-01 5 140783618 140783618 C T PCDHGA9 Missense_Mutation p.L367F 0.06 deleterious_low_confidence(0.01) benign(0.027) TCGA-AA-A00N-01 5 140788198 140788198 C T PCDHGB6 Silent p.F143F 0.22 TCGA-AA-A00N-01 5 140788883 140788883 C T PCDHGB6 Missense_Mutation p.R372W 0.15 deleterious(0.01) benign(0.22) TCGA-AA-A00N-01 5 140797692 140797692 G A PCDHGB7 Missense_Mutation p.R89Q 0.22 deleterious(0) probably_damaging(0.948) TCGA-AA-A00N-01 5 140799416 140799416 T C PCDHGB7 Missense_Mutation p.F664L 0.11 tolerated(0.21) benign(0.403) TCGA-AA-A00N-01 5 140801598 140801598 G A PCDHGA11 Silent p.T268T 0.17 TCGA-AA-A00N-01 5 140802139 140802139 A G PCDHGA11 Missense_Mutation p.N449D 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A00N-01 5 140807429 140807429 C T PCDHGB6 Intron 0.32 TCGA-AA-A00N-01 5 140866889 140866889 C T PCDHGC4 Missense_Mutation p.R717C 0.24 deleterious(0) probably_damaging(0.943) TCGA-AA-A00N-01 5 141024437 141024437 C T FCHSD1 Missense_Mutation p.E505K 0.23 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 5 141025359 141025359 G T FCHSD1 Silent p.S430S 0.23 TCGA-AA-A00N-01 5 141038167 141038167 T G ARAP3 Silent p.P1130P 0.10 TCGA-AA-A00N-01 5 141050150 141050150 T C ARAP3 Missense_Mutation p.Y679C 0.17 deleterious(0.04) benign(0.008) TCGA-AA-A00N-01 5 141324853 141324853 G A PCDH12 3'UTR 0.19 TCGA-AA-A00N-01 5 141325230 141325230 C T PCDH12 Missense_Mutation p.G1091S 0.18 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 5 141362946 141362946 G T RNF14 Missense_Mutation p.E355D 0.20 tolerated(0.34) benign(0.005) TCGA-AA-A00N-01 5 141975025 141975025 A G FGF1 Missense_Mutation p.F100L 0.30 deleterious(0) possibly_damaging(0.687) TCGA-AA-A00N-01 5 142393656 142393656 G A ARHGAP26 Silent p.S373S 0.22 TCGA-AA-A00N-01 5 142689725 142689725 G A NR3C1 Nonsense_Mutation p.R470* 0.46 TCGA-AA-A00N-01 5 142689729 142689729 T G NR3C1 Missense_Mutation p.K468N 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 5 142779740 142779740 T G NR3C1 Missense_Mutation p.N222T 0.24 tolerated(0.42) benign(0.102) TCGA-AA-A00N-01 5 142779904 142779904 C T NR3C1 Silent p.Q167Q 0.13 TCGA-AA-A00N-01 5 143200231 143200231 A G HMHB1 3'UTR 0.08 TCGA-AA-A00N-01 5 14508111 14508111 C T TRIO Silent p.F2958F 0.34 TCGA-AA-A00N-01 5 145246231 145246231 G A GRXCR2 Nonsense_Mutation p.R133* 0.16 TCGA-AA-A00N-01 5 145719917 145719917 G T POU4F3 Missense_Mutation p.E309D 0.17 tolerated(0.27) benign(0.22) TCGA-AA-A00N-01 5 145883454 145883454 G A TCERG1 Missense_Mutation p.R872Q 0.04 deleterious(0) unknown(0) TCGA-AA-A00N-01 5 145883504 145883504 C T TCERG1 Nonsense_Mutation p.R889* 0.04 TCGA-AA-A00N-01 5 145890300 145890300 G A TCERG1 3'UTR 0.32 TCGA-AA-A00N-01 5 145895147 145895147 G A GPR151 Missense_Mutation p.T177I 0.08 deleterious(0.02) probably_damaging(0.933) TCGA-AA-A00N-01 5 1463877 1463877 G A LPCAT1 Silent p.F498F 0.29 TCGA-AA-A00N-01 5 1463913 1463913 G A LPCAT1 Silent p.F486F 0.16 TCGA-AA-A00N-01 5 146971217 146971217 C A JAKMIP2 3'UTR 0.28 TCGA-AA-A00N-01 5 147051407 147051407 C A JAKMIP2 5'UTR 0.18 TCGA-AA-A00N-01 5 147258301 147258301 G T SCGB3A2 5'UTR 0.16 TCGA-AA-A00N-01 5 147505305 147505305 G A SPINK5 Missense_Mutation p.R950Q 0.06 tolerated(0.25) benign(0.411) TCGA-AA-A00N-01 5 147516654 147516654 T G SPINK5 3'UTR 0.14 TCGA-AA-A00N-01 5 147549306 147549306 C A SPINK14 Missense_Mutation p.S4Y 0.16 tolerated(0.98) benign(0) TCGA-AA-A00N-01 5 147795518 147795518 A G FBXO38 Missense_Mutation p.D431G 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-AA-A00N-01 5 149361100 149361100 T G SLC26A2 Silent p.T648T 0.24 TCGA-AA-A00N-01 5 149375806 149375806 C A TIGD6 Nonsense_Mutation p.E36* 0.30 TCGA-AA-A00N-01 5 149495372 149495372 G A PDGFRB Missense_Mutation p.S1092L 0.27 tolerated(0.16) benign(0.038) TCGA-AA-A00N-01 5 149929248 149929248 C A NDST1 Silent p.V775V 0.23 TCGA-AA-A00N-01 5 150050094 150050094 T C MYOZ3 Missense_Mutation p.M37T 0.18 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 5 150227750 150227750 T C IRGM Missense_Mutation p.I22T 0.18 deleterious(0.01) possibly_damaging(0.593) TCGA-AA-A00N-01 5 150275860 150275860 A G ZNF300 Missense_Mutation p.V330A 0.17 tolerated(0.06) possibly_damaging(0.803) TCGA-AA-A00N-01 5 150925424 150925424 G T FAT2 Missense_Mutation p.A1755D 0.22 possibly_damaging(0.821) TCGA-AA-A00N-01 5 150946748 150946748 G A FAT2 Missense_Mutation p.S582L 0.19 benign(0.005) TCGA-AA-A00N-01 5 150947869 150947869 C A FAT2 Missense_Mutation p.K208N 0.23 benign(0.394) TCGA-AA-A00N-01 5 151169896 151169896 G T G3BP1 Missense_Mutation p.K36N 0.18 tolerated(0.13) possibly_damaging(0.551) TCGA-AA-A00N-01 5 153190821 153190821 G A GRIA1 3'UTR 0.24 TCGA-AA-A00N-01 5 153433894 153433894 C A MFAP3 3'UTR 0.22 TCGA-AA-A00N-01 5 154190910 154190910 G A LARP1 Missense_Mutation p.E906K 0.22 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 5 154267921 154267921 T C GEMIN5 Missense_Mutation p.D1459G 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A00N-01 5 154394055 154394055 T C KIF4B Silent p.S212S 0.23 TCGA-AA-A00N-01 5 156376729 156376729 G A TIMD4 Silent p.V231V 0.27 TCGA-AA-A00N-01 5 156589801 156589801 C T FAM71B Missense_Mutation p.R492Q 0.23 tolerated(0.29) benign(0.123) TCGA-AA-A00N-01 5 156590044 156590044 C T FAM71B Missense_Mutation p.R411Q 0.17 tolerated(0.53) benign(0.256) TCGA-AA-A00N-01 5 156608060 156608060 G A ITK Silent p.S24S 0.39 TCGA-AA-A00N-01 5 156649963 156649963 G A ITK Missense_Mutation p.E196K 0.15 tolerated(0.33) benign(0.107) TCGA-AA-A00N-01 5 158526659 158526659 T G EBF1 5'UTR 0.32 TCGA-AA-A00N-01 5 159344761 159344761 T G ADRA1B Silent p.L283L 0.06 TCGA-AA-A00N-01 5 15937016 15937016 G T FBXL7 Missense_Mutation p.K399N 0.15 deleterious(0.01) benign(0.419) TCGA-AA-A00N-01 5 159656585 159656585 C T FABP6 Silent p.F56F 0.23 TCGA-AA-A00N-01 5 159842174 159842174 C T SLU7 Missense_Mutation p.R43Q 0.19 deleterious(0.02) benign(0.038) TCGA-AA-A00N-01 5 159996541 159996541 G A ATP10B Silent p.L1300L 0.17 TCGA-AA-A00N-01 5 161119083 161119083 C T GABRA6 Silent p.F321F 0.27 TCGA-AA-A00N-01 5 161580389 161580389 T C GABRG2 3'UTR 0.17 TCGA-AA-A00N-01 5 162902498 162902498 C T HMMR Missense_Mutation p.S363F 0.22 deleterious(0.03) benign(0.023) TCGA-AA-A00N-01 5 16668425 16668425 G A MYO10 Silent p.I2012I 0.19 TCGA-AA-A00N-01 5 167674559 167674559 C T TENM2 Silent p.Y2205Y 0.14 TCGA-AA-A00N-01 5 168112761 168112761 G A SLIT3 Silent p.F1162F 0.29 TCGA-AA-A00N-01 5 168201264 168201264 G A SLIT3 Missense_Mutation p.A424V 0.23 tolerated(0.14) benign(0.032) TCGA-AA-A00N-01 5 169028395 169028395 G A SPDL1 Missense_Mutation p.R479Q 0.18 tolerated(0.7) benign(0.075) TCGA-AA-A00N-01 5 169174416 169174416 G T DOCK2 Nonsense_Mutation p.E762* 0.10 TCGA-AA-A00N-01 5 169310383 169310383 C T FAM196B Missense_Mutation p.V174I 0.27 tolerated(0.38) benign(0.032) TCGA-AA-A00N-01 5 169446017 169446017 A G DOCK2 Missense_Mutation p.T1096A 0.22 tolerated(0.07) possibly_damaging(0.831) TCGA-AA-A00N-01 5 169484666 169484666 C T DOCK2 Missense_Mutation p.S1488L 0.09 tolerated(0.17) benign(0.132) TCGA-AA-A00N-01 5 170725847 170725847 C T RANBP17 Silent p.L1084L 0.08 TCGA-AA-A00N-01 5 170738559 170738559 G A TLX3 Missense_Mutation p.E278K 0.06 tolerated(0.07) benign(0.055) TCGA-AA-A00N-01 5 171523538 171523538 A G STK10 Silent p.S299S 0.15 TCGA-AA-A00N-01 5 172097228 172097228 G A NEURL1B Missense_Mutation p.V158M 0.40 deleterious(0) possibly_damaging(0.908) TCGA-AA-A00N-01 5 172447286 172447286 G A ATP6V0E1 Silent p.P66P 0.08 TCGA-AA-A00N-01 5 172513547 172513547 G A CREBRF Missense_Mutation p.R18Q 0.31 tolerated_low_confidence(0.89) benign(0.007) TCGA-AA-A00N-01 5 173035256 173035256 C A BOD1 3'UTR 0.18 TCGA-AA-A00N-01 5 173531332 173531332 C T NSG2 Silent p.F105F 0.15 TCGA-AA-A00N-01 5 174869983 174869983 C A DRD1 Silent p.G40G 0.16 TCGA-AA-A00N-01 5 176078626 176078626 G A TSPAN17 Missense_Mutation p.A33T 0.27 tolerated(0.39) benign(0.036) TCGA-AA-A00N-01 5 176295964 176295964 C T UNC5A Silent p.Y240Y 0.30 TCGA-AA-A00N-01 5 176631233 176631233 C T NSD1 Silent p.F392F 0.22 TCGA-AA-A00N-01 5 176637583 176637583 T C NSD1 Missense_Mutation p.V728A 0.17 deleterious_low_confidence(0.02) benign(0.008) TCGA-AA-A00N-01 5 176794718 176794718 C T RGS14 Missense_Mutation p.P211S 0.18 tolerated(0.45) benign(0.016) TCGA-AA-A00N-01 5 176885500 176885500 C A DBN1 Missense_Mutation p.E447D 0.19 tolerated_low_confidence(0.6) benign(0.03) TCGA-AA-A00N-01 5 176910961 176910961 C T PDLIM7 Silent p.T398T 0.12 TCGA-AA-A00N-01 5 177021234 177021234 G A TMED9 Missense_Mutation p.R169Q 0.17 tolerated(0.24) benign(0.315) TCGA-AA-A00N-01 5 177059694 177059694 G A RP11-1277A3.2 Intron 0.06 TCGA-AA-A00N-01 5 177547183 177547183 G A N4BP3 Missense_Mutation p.R112H 0.18 deleterious(0.05) benign(0.005) TCGA-AA-A00N-01 5 178139574 178139574 C A ZNF354A Missense_Mutation p.E435D 0.23 deleterious(0) probably_damaging(0.983) TCGA-AA-A00N-01 5 178140191 178140191 G A ZNF354A Missense_Mutation p.R230C 0.15 tolerated(0.15) probably_damaging(0.959) TCGA-AA-A00N-01 5 178199579 178199579 A G AACSP1 RNA 0.12 TCGA-AA-A00N-01 5 178309732 178309732 G T ZNF354B Missense_Mutation p.M93I 0.20 tolerated(0.41) benign(0.001) TCGA-AA-A00N-01 5 178359050 178359050 G T ZFP2 Nonsense_Mutation p.E246* 0.15 TCGA-AA-A00N-01 5 178416006 178416006 G A GRM6 Silent p.G428G 0.24 TCGA-AA-A00N-01 5 178506763 178506763 G T ZNF354C Nonsense_Mutation p.E444* 0.32 TCGA-AA-A00N-01 5 179069915 179069915 G A C5orf60 Missense_Mutation p.A213V 0.26 tolerated(0.89) benign(0) TCGA-AA-A00N-01 5 179221347 179221347 A C LTC4S Intron 0.27 TCGA-AA-A00N-01 5 179302161 179302161 C T TBC1D9B Missense_Mutation p.E643K 0.19 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 5 179545656 179545656 G A RASGEF1C Missense_Mutation p.R346C 0.30 deleterious(0) probably_damaging(0.932) TCGA-AA-A00N-01 5 179734231 179734231 G A GFPT2 Missense_Mutation p.S540L 0.19 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 5 179765547 179765547 C T GFPT2 Missense_Mutation p.E21K 0.17 tolerated(0.13) benign(0.014) TCGA-AA-A00N-01 5 180001162 180001162 C T CNOT6 Missense_Mutation p.P546S 0.05 tolerated(0.18) benign(0.014) TCGA-AA-A00N-01 5 180041138 180041138 G A FLT4 Silent p.F1087F 0.13 TCGA-AA-A00N-01 5 180048632 180048632 C T FLT4 Missense_Mutation p.A644T 0.34 tolerated(0.15) benign(0.036) TCGA-AA-A00N-01 5 180048714 180048714 G A FLT4 Silent p.F616F 0.22 TCGA-AA-A00N-01 5 180166826 180166826 A G OR2Y1 Missense_Mutation p.V78A 0.07 tolerated(0.09) benign(0.323) TCGA-AA-A00N-01 5 180275766 180275766 C T ZFP62 3'UTR 0.16 TCGA-AA-A00N-01 5 180275847 180275847 C A ZFP62 Missense_Mutation p.R883I 0.25 tolerated(0.21) benign(0.001) TCGA-AA-A00N-01 5 180687361 180687361 C A TRIM52 Nonsense_Mutation p.E152* 0.20 TCGA-AA-A00N-01 5 1882729 1882729 G T IRX4 Silent p.S11S 0.16 TCGA-AA-A00N-01 5 19571871 19571871 C T CDH18 Missense_Mutation p.R357H 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-AA-A00N-01 5 19747057 19747057 C A CDH18 Missense_Mutation p.D173Y 0.21 deleterious(0.03) possibly_damaging(0.772) TCGA-AA-A00N-01 5 19747140 19747140 A C CDH18 Missense_Mutation p.F145C 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 5 21842391 21842391 T C CDH12 Silent p.E231E 0.28 TCGA-AA-A00N-01 5 228384 228384 G A SDHA Missense_Mutation p.A236T 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.745) TCGA-AA-A00N-01 5 23509585 23509585 G T PRDM9 Missense_Mutation p.D26Y 0.05 deleterious_low_confidence(0) benign(0.29) TCGA-AA-A00N-01 5 24492977 24492977 A C CDH10 Missense_Mutation p.F525V 0.15 tolerated(0.26) benign(0.347) TCGA-AA-A00N-01 5 24509886 24509886 C T CDH10 Missense_Mutation p.E349K 0.20 tolerated(0.13) probably_damaging(0.979) TCGA-AA-A00N-01 5 26988293 26988293 G A CDH9 Missense_Mutation p.R50C 0.47 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 5 31424572 31424572 G A DROSHA Missense_Mutation p.R1075C 0.28 tolerated(0.13) possibly_damaging(0.676) TCGA-AA-A00N-01 5 31429604 31429604 C G DROSHA Missense_Mutation p.G1065A 0.16 tolerated(0.22) benign(0.109) TCGA-AA-A00N-01 5 31451654 31451654 G A DROSHA Missense_Mutation p.R890C 0.19 deleterious(0) probably_damaging(0.972) TCGA-AA-A00N-01 5 31983673 31983673 A G PDZD2 Missense_Mutation p.T297A 0.31 tolerated(0.13) benign(0.047) TCGA-AA-A00N-01 5 32712305 32712305 G A NPR3 Silent p.A141A 0.21 TCGA-AA-A00N-01 5 32789458 32789458 G T NPR3 3'UTR 0.36 TCGA-AA-A00N-01 5 32790896 32790896 G T NPR3 3'UTR 0.18 TCGA-AA-A00N-01 5 32790993 32790993 T C NPR3 3'UTR 0.25 TCGA-AA-A00N-01 5 32791684 32791684 G A NPR3 3'UTR 0.23 TCGA-AA-A00N-01 5 33467054 33467054 C T TARS Nonsense_Mutation p.R696* 0.26 TCGA-AA-A00N-01 5 33549459 33549459 C A ADAMTS12 Missense_Mutation p.K1385N 0.35 deleterious(0.01) possibly_damaging(0.529) TCGA-AA-A00N-01 5 33683975 33683975 T C ADAMTS12 Missense_Mutation p.I274V 0.16 tolerated(0.27) probably_damaging(0.999) TCGA-AA-A00N-01 5 33891893 33891893 C T ADAMTS12 Silent p.A23A 0.05 TCGA-AA-A00N-01 5 34824361 34824361 C T RAI14 Missense_Mutation p.S808L 0.21 tolerated(0.32) benign(0.012) TCGA-AA-A00N-01 5 35065513 35065513 T C PRLR Missense_Mutation p.N516S 0.27 tolerated(0.2) benign(0.098) TCGA-AA-A00N-01 5 35649490 35649490 G A SPEF2 Missense_Mutation p.E252K 0.31 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 5 35740230 35740230 G T SPEF2 Splice_Site p.X1064_splice 0.22 TCGA-AA-A00N-01 5 35776377 35776377 G A SPEF2 Missense_Mutation p.R1366Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 5 35867423 35867423 G T IL7R Missense_Mutation p.E79D 0.09 tolerated(0.57) benign(0) TCGA-AA-A00N-01 5 35910613 35910613 C T CAPSL Missense_Mutation p.R57Q 0.22 deleterious(0.03) benign(0.055) TCGA-AA-A00N-01 5 3600115 3600115 G A IRX1 Silent p.P351P 0.17 TCGA-AA-A00N-01 5 36035913 36035913 C T UGT3A2 Missense_Mutation p.D487N 0.25 tolerated(0.06) possibly_damaging(0.537) TCGA-AA-A00N-01 5 36249627 36249627 C A RANBP3L 3'UTR 0.22 TCGA-AA-A00N-01 5 36249674 36249674 C A RANBP3L 3'UTR 0.17 TCGA-AA-A00N-01 5 36253817 36253817 T G RANBP3L Missense_Mutation p.N392H 0.29 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 5 36686427 36686427 C T SLC1A3 3'UTR 0.13 TCGA-AA-A00N-01 5 37064109 37064109 C T NIPBL Intron 0.41 TCGA-AA-A00N-01 5 37108560 37108560 C T C5orf42 Silent p.P3084P 0.15 TCGA-AA-A00N-01 5 37169135 37169135 C T C5orf42 Missense_Mutation p.D2331N 0.20 tolerated(0.14) benign(0.048) TCGA-AA-A00N-01 5 37835796 37835796 G A GDNF 5'UTR 0.26 TCGA-AA-A00N-01 5 38490301 38490301 C A LIFR Nonsense_Mutation p.E720* 0.18 TCGA-AA-A00N-01 5 38506127 38506127 C T LIFR Missense_Mutation p.E391K 0.18 tolerated(0.36) benign(0.004) TCGA-AA-A00N-01 5 38510575 38510575 A C LIFR Missense_Mutation p.F328V 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 5 38932976 38932976 G T OSMR Missense_Mutation p.E790D 0.18 tolerated(0.35) benign(0.445) TCGA-AA-A00N-01 5 38982000 38982000 C T RICTOR Missense_Mutation p.R241Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 5 39383254 39383254 C T DAB2 Silent p.T269T 0.16 TCGA-AA-A00N-01 5 40964858 40964858 T C C7 Missense_Mutation p.F589L 0.23 deleterious(0.01) benign(0.14) TCGA-AA-A00N-01 5 41015499 41015499 G T MROH2B Missense_Mutation p.S989Y 0.33 deleterious(0.04) benign(0.299) TCGA-AA-A00N-01 5 41176764 41176764 C T C6 Silent p.T327T 0.24 TCGA-AA-A00N-01 5 41762269 41762269 C A OXCT1 Missense_Mutation p.D428Y 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A00N-01 5 41941436 41941436 C T FBXO4 3'UTR 0.20 TCGA-AA-A00N-01 5 42801449 42801449 A G CCDC152 3'UTR 0.12 TCGA-AA-A00N-01 5 43246106 43246106 C T NIM1K Nonsense_Mutation p.R77* 0.13 TCGA-AA-A00N-01 5 43246132 43246132 C A NIM1K Missense_Mutation p.F85L 0.15 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 5 434210 434210 C T AHRR Missense_Mutation p.P474L 0.22 tolerated(0.12) benign(0.06) TCGA-AA-A00N-01 5 43508741 43508741 G A C5orf34 Nonsense_Mutation p.R75* 0.16 TCGA-AA-A00N-01 5 454128 454128 C T EXOC3 Silent p.I336I 0.15 TCGA-AA-A00N-01 5 485315 485315 G A SLC9A3 Missense_Mutation p.A236V 0.20 tolerated(0.09) benign(0.164) TCGA-AA-A00N-01 5 49695705 49695705 C T EMB Silent p.R318R 0.17 TCGA-AA-A00N-01 5 49701563 49701563 A G EMB Missense_Mutation p.V199A 0.20 tolerated(0.7) benign(0.05) TCGA-AA-A00N-01 5 50117113 50117113 G A PARP8 Missense_Mutation p.E579K 0.21 deleterious(0.04) benign(0.391) TCGA-AA-A00N-01 5 5186219 5186219 C A ADAMTS16 Missense_Mutation p.S273Y 0.20 tolerated(1) benign(0.009) TCGA-AA-A00N-01 5 52248371 52248371 A G ITGA1 3'UTR 0.26 TCGA-AA-A00N-01 5 52344490 52344490 G T ITGA2 Missense_Mutation p.D174Y 0.05 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 5 52780097 52780097 G A FST Missense_Mutation p.G232E 0.23 deleterious(0.04) probably_damaging(1) TCGA-AA-A00N-01 5 52781539 52781539 C T FST Intron 0.31 TCGA-AA-A00N-01 5 53815028 53815028 G A SNX18 Missense_Mutation p.A416T 0.13 tolerated(0.32) benign(0.086) TCGA-AA-A00N-01 5 53815929 53815929 G T SNX18 3'UTR 0.06 TCGA-AA-A00N-01 5 54327349 54327349 C A GZMK Missense_Mutation p.T174N 0.14 deleterious(0) possibly_damaging(0.562) TCGA-AA-A00N-01 5 54401395 54401395 C A GZMA Missense_Mutation p.A55D 0.17 deleterious(0) probably_damaging(0.929) TCGA-AA-A00N-01 5 54674178 54674178 T C SKIV2L2 Missense_Mutation p.V616A 0.29 tolerated(0.72) benign(0.001) TCGA-AA-A00N-01 5 54696165 54696165 T G SKIV2L2 Silent p.A799A 0.05 TCGA-AA-A00N-01 5 54960688 54960688 G A SLC38A9 Missense_Mutation p.S177L 0.07 tolerated(0.4) benign(0.004) TCGA-AA-A00N-01 5 56778595 56778595 G A ACTBL2 5'UTR 0.15 TCGA-AA-A00N-01 5 57913641 57913641 G A RAB3C Missense_Mutation p.D66N 0.14 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 5 60050575 60050575 A G ELOVL7 Missense_Mutation p.I241T 0.07 deleterious(0.02) possibly_damaging(0.635) TCGA-AA-A00N-01 5 61772556 61772556 G T IPO11 Missense_Mutation p.K308N 0.15 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 5 63256305 63256305 G T HTR1A Silent p.I414I 0.19 TCGA-AA-A00N-01 5 63509722 63509722 A G RNF180 Missense_Mutation p.Y190C 0.45 tolerated(0.17) benign(0) TCGA-AA-A00N-01 5 63871640 63871640 T G RGS7BP Silent p.L124L 0.24 TCGA-AA-A00N-01 5 63871725 63871725 C T RGS7BP Nonsense_Mutation p.R153* 0.12 TCGA-AA-A00N-01 5 64079693 64079693 C T CWC27 Missense_Mutation p.R95W 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 5 64267621 64267621 A G CWC27 Silent p.G378G 0.19 TCGA-AA-A00N-01 5 64825024 64825024 G A CENPK Silent p.F97F 0.21 TCGA-AA-A00N-01 5 64850668 64850668 C A CENPK Nonsense_Mutation p.E23* 0.26 TCGA-AA-A00N-01 5 64886148 64886148 A C TRIM23 3'UTR 0.20 TCGA-AA-A00N-01 5 64905248 64905248 C T TRIM23 Missense_Mutation p.R289Q 0.08 tolerated(0.07) benign(0.054) TCGA-AA-A00N-01 5 6491454 6491454 G A UBE2QL1 Missense_Mutation p.D160N 0.17 deleterious(0) possibly_damaging(0.891) TCGA-AA-A00N-01 5 64966133 64966133 C T SGTB Silent p.E285E 0.17 TCGA-AA-A00N-01 5 64981213 64981213 T C SGTB Missense_Mutation p.K154R 0.06 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 5 65016581 65016581 T G SGTB Missense_Mutation p.Q18H 0.17 deleterious(0) possibly_damaging(0.601) TCGA-AA-A00N-01 5 65350751 65350751 G A ERBB2IP Missense_Mutation p.R1202Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 5 6611190 6611190 C T NSUN2 Silent p.T368T 0.06 TCGA-AA-A00N-01 5 66254993 66254993 C T MAST4 Intron 0.16 TCGA-AA-A00N-01 5 66427706 66427706 T G MAST4 Missense_Mutation p.F674V 0.30 probably_damaging(0.955) TCGA-AA-A00N-01 5 68667935 68667935 C T RAD17 Intron 0.16 TCGA-AA-A00N-01 5 71491100 71491100 A C MAP1B Missense_Mutation p.K640Q 0.05 unknown(0) TCGA-AA-A00N-01 5 71491238 71491238 A C MAP1B Missense_Mutation p.K686Q 0.24 unknown(0) TCGA-AA-A00N-01 5 71492659 71492659 C T MAP1B Silent p.F1159F 0.20 TCGA-AA-A00N-01 5 71494954 71494954 G A MAP1B Silent p.E1924E 0.13 TCGA-AA-A00N-01 5 71496058 71496058 G T MAP1B Missense_Mutation p.K2292N 0.18 probably_damaging(0.997) TCGA-AA-A00N-01 5 72801087 72801087 A C BTF3 3'UTR 0.16 TCGA-AA-A00N-01 5 72864291 72864291 C A UTP15 Missense_Mutation p.S77Y 0.25 deleterious(0) probably_damaging(0.964) TCGA-AA-A00N-01 5 72874672 72874672 C A UTP15 Missense_Mutation p.L381I 0.07 deleterious(0.02) benign(0.204) TCGA-AA-A00N-01 5 74325304 74325304 A C GCNT4 Missense_Mutation p.F187V 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 5 74754984 74754984 C T COL4A3BP Missense_Mutation p.R213Q 0.24 deleterious(0) possibly_damaging(0.882) TCGA-AA-A00N-01 5 75896721 75896721 G A IQGAP2 Missense_Mutation p.D386N 0.15 tolerated(0.25) benign(0.078) TCGA-AA-A00N-01 5 75948599 75948599 C T IQGAP2 Missense_Mutation p.R707W 0.18 deleterious(0.04) probably_damaging(0.988) TCGA-AA-A00N-01 5 76728926 76728926 A G WDR41 3'UTR 0.13 TCGA-AA-A00N-01 5 76785309 76785309 C T WDR41 Missense_Mutation p.R47Q 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-AA-A00N-01 5 77784784 77784784 G C LHFPL2 Missense_Mutation p.A208G 0.18 deleterious(0.03) possibly_damaging(0.783) TCGA-AA-A00N-01 5 78324282 78324282 A G DMGDH Missense_Mutation p.V669A 0.09 deleterious(0.02) benign(0.052) TCGA-AA-A00N-01 5 78936729 78936729 T C PAPD4 Missense_Mutation p.L174S 0.20 deleterious(0) probably_damaging(0.98) TCGA-AA-A00N-01 5 79025338 79025338 G T CMYA5 Missense_Mutation p.K250N 0.13 possibly_damaging(0.788) TCGA-AA-A00N-01 5 79025756 79025756 T C CMYA5 Missense_Mutation p.F390L 0.29 benign(0) TCGA-AA-A00N-01 5 79028019 79028019 C A CMYA5 Nonsense_Mutation p.S1144* 0.18 TCGA-AA-A00N-01 5 79084796 79084796 C A CMYA5 Missense_Mutation p.S3853Y 0.26 probably_damaging(0.999) TCGA-AA-A00N-01 5 79355304 79355304 C T THBS4 Silent p.C258C 0.17 TCGA-AA-A00N-01 5 79729936 79729936 G T ZFYVE16 5'UTR 0.07 TCGA-AA-A00N-01 5 79730029 79730029 G T ZFYVE16 Missense_Mutation p.Q21H 0.18 deleterious(0) possibly_damaging(0.868) TCGA-AA-A00N-01 5 79752287 79752287 G A ZFYVE16 Missense_Mutation p.R1233Q 0.33 deleterious(0) probably_damaging(0.937) TCGA-AA-A00N-01 5 80382667 80382667 G T RASGRF2 Nonsense_Mutation p.E429* 0.18 TCGA-AA-A00N-01 5 80504213 80504213 G A RASGRF2 Missense_Mutation p.E1038K 0.21 tolerated(0.11) benign(0.393) TCGA-AA-A00N-01 5 80641747 80641747 G A ACOT12 Missense_Mutation p.R244C 0.20 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 5 80946145 80946145 C T SSBP2 Missense_Mutation p.V26I 0.17 tolerated(0.07) benign(0.322) TCGA-AA-A00N-01 5 82832717 82832717 T G VCAN Intron 0.29 TCGA-AA-A00N-01 5 82832786 82832786 A C VCAN Intron 0.33 TCGA-AA-A00N-01 5 82835675 82835675 C A VCAN Missense_Mutation p.P2285T 0.20 deleterious(0.02) benign(0.001) TCGA-AA-A00N-01 5 82948298 82948298 G A HAPLN1 Missense_Mutation p.T149I 0.20 tolerated(0.17) benign(0.01) TCGA-AA-A00N-01 5 837485 837485 G T ZDHHC11 Missense_Mutation p.L299I 0.11 tolerated(0.43) benign(0.26) TCGA-AA-A00N-01 5 864672 864672 G A BRD9 Missense_Mutation p.R569C 0.17 deleterious_low_confidence(0) benign(0.393) TCGA-AA-A00N-01 5 88018354 88018354 C T MEF2C 3'UTR 0.17 TCGA-AA-A00N-01 5 89943516 89943516 T G GPR98 Missense_Mutation p.F1075C 0.27 possibly_damaging(0.611) TCGA-AA-A00N-01 5 90079133 90079133 A G GPR98 Missense_Mutation p.D4475G 0.18 probably_damaging(0.989) TCGA-AA-A00N-01 5 90281308 90281308 T C GPR98 Missense_Mutation p.S6041P 0.21 benign(0) TCGA-AA-A00N-01 5 92929649 92929649 C T NR2F1 3'UTR 0.27 TCGA-AA-A00N-01 5 93732005 93732005 C T KIAA0825 Missense_Mutation p.E1033K 0.17 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 5 93856418 93856418 G A KIAA0825 Nonsense_Mutation p.R169* 0.20 TCGA-AA-A00N-01 5 93999461 93999461 A C ANKRD32 Missense_Mutation p.N406H 0.06 deleterious(0) possibly_damaging(0.8) TCGA-AA-A00N-01 5 94043223 94043223 C T MCTP1 Missense_Mutation p.R993K 0.28 tolerated(0.75) benign(0.194) TCGA-AA-A00N-01 5 94050484 94050484 C A MCTP1 Missense_Mutation p.K906N 0.23 deleterious(0.02) probably_damaging(0.969) TCGA-AA-A00N-01 5 94784152 94784152 G A FAM81B Silent p.Q403Q 0.21 TCGA-AA-A00N-01 5 94877076 94877076 T G TTC37 Missense_Mutation p.K112T 0.26 deleterious(0.01) probably_damaging(0.946) TCGA-AA-A00N-01 5 94879008 94879009 - T TTC37 Frame_Shift_Ins p.N38Kfs*2 0.16 TCGA-AA-A00N-01 5 96065368 96065368 A C CAST Missense_Mutation p.N122T 0.20 tolerated(0.34) benign(0.149) TCGA-AA-A00N-01 5 96432537 96432537 G A LIX1 Missense_Mutation p.R180C 0.19 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 5 98235335 98235335 C A CHD1 Nonsense_Mutation p.E312* 0.05 TCGA-AA-A00N-01 6 100895200 100895200 C A SIM1 Silent p.V314V 0.20 TCGA-AA-A00N-01 6 100896032 100896032 C T SIM1 Silent p.A280A 0.21 TCGA-AA-A00N-01 6 100964062 100964062 C T ASCC3 Silent p.T2023T 0.09 TCGA-AA-A00N-01 6 101306956 101306956 C A ASCC3 Intron 0.19 TCGA-AA-A00N-01 6 101847222 101847222 A G GRIK2 Silent p.L23L 0.24 TCGA-AA-A00N-01 6 102124605 102124605 G A GRIK2 Missense_Mutation p.E217K 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 6 102337636 102337636 A G GRIK2 Missense_Mutation p.N549S 0.19 tolerated(0.42) benign(0.027) TCGA-AA-A00N-01 6 105225190 105225190 A C HACE1 Silent p.P523P 0.26 TCGA-AA-A00N-01 6 10587025 10587025 C T GCNT2 Intron 0.20 TCGA-AA-A00N-01 6 10587057 10587057 C T GCNT2 Intron 0.21 TCGA-AA-A00N-01 6 10621675 10621675 C T GCNT2 Silent p.H339H 0.25 TCGA-AA-A00N-01 6 106536260 106536260 C T PRDM1 Missense_Mutation p.S76L 0.06 tolerated(0.35) benign(0.001) TCGA-AA-A00N-01 6 106975276 106975276 T G AIM1 Missense_Mutation p.I1095M 0.27 tolerated(0.19) benign(0.076) TCGA-AA-A00N-01 6 10791909 10791909 G A MAK Missense_Mutation p.R439W 0.22 deleterious(0.02) benign(0.003) TCGA-AA-A00N-01 6 108843539 108843539 G A LACE1 Missense_Mutation p.E453K 0.23 deleterious(0.02) possibly_damaging(0.844) TCGA-AA-A00N-01 6 109481817 109481817 T G CEP57L1 Missense_Mutation p.S353R 0.22 tolerated(0.21) benign(0.073) TCGA-AA-A00N-01 6 109757379 109757379 G A PPIL6 Silent p.S53S 0.23 TCGA-AA-A00N-01 6 109764267 109764267 G T SMPD2 Missense_Mutation p.D238Y 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 109771525 109771525 A C MICAL1 Missense_Mutation p.L390R 0.14 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 6 109787672 109787672 G A ZBTB24 Silent p.C492C 0.24 TCGA-AA-A00N-01 6 109835502 109835502 G A AK9 Missense_Mutation p.R1402C 0.19 tolerated(0.16) benign(0.167) TCGA-AA-A00N-01 6 10983953 10983953 C A ELOVL2 3'UTR 0.17 TCGA-AA-A00N-01 6 109867219 109867219 G T AK9 Missense_Mutation p.L1026I 0.28 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 6 109962807 109962807 G A AK9 Nonsense_Mutation p.R283* 0.23 TCGA-AA-A00N-01 6 11104488 11104488 G T ERVFRD-1 Silent p.I352I 0.08 TCGA-AA-A00N-01 6 111346620 111346620 A C RPF2 Missense_Mutation p.K252N 0.23 deleterious(0) probably_damaging(0.982) TCGA-AA-A00N-01 6 111665171 111665171 G A REV3L Nonsense_Mutation p.R2499* 0.19 TCGA-AA-A00N-01 6 111689123 111689123 G A REV3L Silent p.F1956F 0.17 TCGA-AA-A00N-01 6 111693940 111693940 C T REV3L Missense_Mutation p.R1873Q 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A00N-01 6 111695915 111695915 T G REV3L Missense_Mutation p.N1215H 0.19 tolerated_low_confidence(0.1) benign(0.229) TCGA-AA-A00N-01 6 112389579 112389579 G A WISP3 Missense_Mutation p.S272N 0.06 tolerated(0.32) benign(0.016) TCGA-AA-A00N-01 6 112460992 112460992 G T LAMA4 Silent p.I1024I 0.08 TCGA-AA-A00N-01 6 112486406 112486406 T C LAMA4 Missense_Mutation p.T542A 0.27 tolerated(0.89) benign(0.001) TCGA-AA-A00N-01 6 112537590 112537590 C T LAMA4 Silent p.L92L 0.22 TCGA-AA-A00N-01 6 116381464 116381464 A G FRK Missense_Mutation p.I4T 0.23 tolerated_low_confidence(0.09) benign(0.001) TCGA-AA-A00N-01 6 116573986 116573986 G A TSPYL4 Nonsense_Mutation p.R396* 0.15 TCGA-AA-A00N-01 6 116574447 116574447 C T TSPYL4 Missense_Mutation p.R242H 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 116783317 116783317 G A FAM26F Nonsense_Mutation p.W75* 0.25 TCGA-AA-A00N-01 6 116866647 116866647 A G TRAPPC3L Missense_Mutation p.Y11H 0.28 tolerated(0.54) benign(0.004) TCGA-AA-A00N-01 6 116910112 116910112 G T RWDD1 Missense_Mutation p.K126N 0.19 tolerated(0.09) benign(0.02) TCGA-AA-A00N-01 6 116988028 116988028 C A ZUFSP Missense_Mutation p.D110Y 0.21 deleterious(0.02) benign(0.06) TCGA-AA-A00N-01 6 117010523 117010523 A C KPNA5 Missense_Mutation p.K15N 0.29 tolerated(0.44) benign(0.024) TCGA-AA-A00N-01 6 117023261 117023261 T C KPNA5 Missense_Mutation p.V172A 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 6 117250120 117250120 G A RFX6 Missense_Mutation p.R866Q 0.10 tolerated_low_confidence(0.15) benign(0.02) TCGA-AA-A00N-01 6 117683906 117683906 T G ROS1 Missense_Mutation p.K1081Q 0.22 tolerated(0.75) benign(0.012) TCGA-AA-A00N-01 6 117686783 117686783 A G ROS1 Silent p.G978G 0.25 TCGA-AA-A00N-01 6 117686879 117686879 A G ROS1 Silent p.V946V 0.21 TCGA-AA-A00N-01 6 117706977 117706977 C T ROS1 Missense_Mutation p.D725N 0.22 tolerated(0.32) benign(0.004) TCGA-AA-A00N-01 6 117896382 117896382 G A GOPC Missense_Mutation p.A203V 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A00N-01 6 118802979 118802979 T G CEP85L Missense_Mutation p.K573Q 0.22 deleterious(0.02) possibly_damaging(0.853) TCGA-AA-A00N-01 6 119221981 119221981 G A ASF1A Missense_Mutation p.D54N 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 12121445 12121445 T G HIVEP1 Missense_Mutation p.L473V 0.21 tolerated(0.18) benign(0.144) TCGA-AA-A00N-01 6 12124192 12124192 C T HIVEP1 Silent p.F1388F 0.21 TCGA-AA-A00N-01 6 122734703 122734703 C T HSF2 Missense_Mutation p.R122C 0.23 tolerated(0.14) benign(0.021) TCGA-AA-A00N-01 6 123577023 123577023 C A TRDN Missense_Mutation p.R632I 0.23 tolerated_low_confidence(0.07) benign(0.031) TCGA-AA-A00N-01 6 124979592 124979592 G A NKAIN2 Intron 0.07 TCGA-AA-A00N-01 6 126319743 126319743 G A TRMT11 Silent p.P145P 0.16 TCGA-AA-A00N-01 6 126333934 126333934 G T TRMT11 Nonsense_Mutation p.E315* 0.07 TCGA-AA-A00N-01 6 127476481 127476481 G T RSPO3 Nonsense_Mutation p.E178* 0.09 TCGA-AA-A00N-01 6 127797353 127797353 G A SOGA3 Silent p.V606V 0.17 TCGA-AA-A00N-01 6 128134768 128134768 C T THEMIS Missense_Mutation p.G340S 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 128298080 128298080 G A PTPRK Silent p.V1283V 0.11 TCGA-AA-A00N-01 6 128304413 128304413 G A PTPRK Missense_Mutation p.R1127W 0.13 deleterious(0) probably_damaging(0.946) TCGA-AA-A00N-01 6 129371109 129371109 G A LAMA2 Silent p.T53T 0.05 TCGA-AA-A00N-01 6 129475658 129475658 T C LAMA2 Missense_Mutation p.C346R 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 129813206 129813206 C A LAMA2 Missense_Mutation p.L2687I 0.18 deleterious(0) possibly_damaging(0.789) TCGA-AA-A00N-01 6 129826378 129826378 C A LAMA2 Missense_Mutation p.L2861I 0.18 tolerated(0.46) possibly_damaging(0.448) TCGA-AA-A00N-01 6 130763899 130763899 G T TMEM200A 3'UTR 0.21 TCGA-AA-A00N-01 6 131958594 131958594 G A ENPP3 Missense_Mutation p.A24T 0.20 deleterious(0.04) benign(0.048) TCGA-AA-A00N-01 6 132004258 132004258 G A ENPP3 Missense_Mutation p.R359Q 0.25 tolerated(0.32) probably_damaging(0.992) TCGA-AA-A00N-01 6 132190590 132190590 C T ENPP1 Nonsense_Mutation p.R456* 0.18 TCGA-AA-A00N-01 6 132206138 132206138 C T ENPP1 Silent p.V793V 0.17 TCGA-AA-A00N-01 6 132211584 132211584 G T ENPP1 Missense_Mutation p.R904I 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A00N-01 6 132649577 132649577 A C MOXD1 Missense_Mutation p.F274V 0.25 tolerated(0.12) benign(0.192) TCGA-AA-A00N-01 6 132796786 132796786 C A STX7 Missense_Mutation p.R34I 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-AA-A00N-01 6 132859486 132859486 G A TAAR9 Missense_Mutation p.E20K 0.20 deleterious(0.02) benign(0) TCGA-AA-A00N-01 6 132859523 132859523 G A TAAR9 Missense_Mutation p.R32Q 0.19 tolerated(0.44) benign(0.027) TCGA-AA-A00N-01 6 132859795 132859795 T G TAAR9 Missense_Mutation p.L123V 0.27 deleterious(0.01) benign(0.04) TCGA-AA-A00N-01 6 13287391 13287391 C T TBC1D7 Intron 0.22 TCGA-AA-A00N-01 6 132892144 132892144 G A TAAR6 Silent p.A228A 0.35 TCGA-AA-A00N-01 6 132910233 132910233 T G TAAR5 Missense_Mutation p.K198T 0.23 deleterious(0) probably_damaging(0.957) TCGA-AA-A00N-01 6 132910819 132910819 C T TAAR5 Missense_Mutation p.A3T 0.21 tolerated_low_confidence(0.39) benign(0.002) TCGA-AA-A00N-01 6 132966494 132966494 C T TAAR1 Missense_Mutation p.A217T 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 133070842 133070842 T G VNN2 Missense_Mutation p.K455Q 0.32 tolerated(0.44) benign(0.295) TCGA-AA-A00N-01 6 133070863 133070863 C T VNN2 Missense_Mutation p.E448K 0.32 tolerated(0.18) benign(0.001) TCGA-AA-A00N-01 6 133072551 133072551 C T VNN2 Silent p.S311S 0.20 TCGA-AA-A00N-01 6 133078825 133078825 C T VNN2 Silent p.K66K 0.30 TCGA-AA-A00N-01 6 133777689 133777689 C T EYA4 Intron 0.45 TCGA-AA-A00N-01 6 133789786 133789786 C T EYA4 Missense_Mutation p.S296L 0.11 deleterious(0.01) benign(0.207) TCGA-AA-A00N-01 6 134303767 134303767 T G TBPL1 Missense_Mutation p.I66S 0.20 deleterious(0) probably_damaging(0.978) TCGA-AA-A00N-01 6 134491484 134491484 G A SGK1 Silent p.L501L 0.19 TCGA-AA-A00N-01 6 134638563 134638563 C A SGK1 Missense_Mutation p.K12N 0.22 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-AA-A00N-01 6 13470326 13470326 C T AL583828.1 Missense_Mutation p.E63K 0.23 possibly_damaging(0.502) TCGA-AA-A00N-01 6 135308864 135308864 T C HBS1L Silent p.G383G 0.23 TCGA-AA-A00N-01 6 135323953 135323953 C T HBS1L Missense_Mutation p.R153Q 0.23 tolerated(0.31) benign(0.002) TCGA-AA-A00N-01 6 135709030 135709030 G A AHI1 Intron 0.12 TCGA-AA-A00N-01 6 136268611 136268611 G A PDE7B Missense_Mutation p.E11K 0.11 tolerated_low_confidence(0.09) benign(0.038) TCGA-AA-A00N-01 6 136597144 136597144 C A BCLAF1 Missense_Mutation p.D507Y 0.09 deleterious(0) benign(0.348) TCGA-AA-A00N-01 6 136597570 136597570 C A BCLAF1 Nonsense_Mutation p.G365* 0.15 TCGA-AA-A00N-01 6 137323122 137323122 G A IL20RA Missense_Mutation p.A412V 0.23 tolerated(0.49) benign(0.002) TCGA-AA-A00N-01 6 137519084 137519084 C A IFNGR1 3'UTR 0.20 TCGA-AA-A00N-01 6 138754210 138754210 G T NHSL1 Silent p.V428V 0.26 TCGA-AA-A00N-01 6 139226221 139226221 G A REPS1 Nonsense_Mutation p.R790* 0.26 TCGA-AA-A00N-01 6 144854329 144854329 G T UTRN Nonsense_Mutation p.E2056* 0.26 TCGA-AA-A00N-01 6 146275864 146275864 T G SHPRH Missense_Mutation p.K199Q 0.30 tolerated_low_confidence(0.51) benign(0.004) TCGA-AA-A00N-01 6 146351334 146351334 C A GRM1 Silent p.V227V 0.25 TCGA-AA-A00N-01 6 147049832 147049832 C T ADGB Silent p.Y825Y 0.14 TCGA-AA-A00N-01 6 147124738 147124738 T G ADGB Intron 0.23 TCGA-AA-A00N-01 6 147136460 147136460 C A ADGB 3'UTR 0.58 TCGA-AA-A00N-01 6 149730820 149730820 C T TAB2 Missense_Mutation p.R683C 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 6 149983088 149983088 A G LATS1 Missense_Mutation p.V1057A 0.18 tolerated(1) benign(0.004) TCGA-AA-A00N-01 6 150001373 150001373 C T LATS1 Missense_Mutation p.R744Q 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 150004302 150004302 G T LATS1 Missense_Mutation p.F641L 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-AA-A00N-01 6 150267625 150267625 G T ULBP2 Missense_Mutation p.R156I 0.19 tolerated(0.07) benign(0.065) TCGA-AA-A00N-01 6 150690282 150690282 G A IYD Missense_Mutation p.E39K 0.29 tolerated(0.33) benign(0.009) TCGA-AA-A00N-01 6 150715307 150715307 C T IYD Silent p.F201F 0.06 TCGA-AA-A00N-01 6 151265691 151265691 G T MTHFD1L Missense_Mutation p.D504Y 0.25 deleterious(0) probably_damaging(0.987) TCGA-AA-A00N-01 6 151789948 151789948 T A C6orf211 Nonsense_Mutation p.C343* 0.24 TCGA-AA-A00N-01 6 151865706 151865706 G A CCDC170 Splice_Site p.X148_splice 0.09 TCGA-AA-A00N-01 6 151936798 151936798 A C CCDC170 Missense_Mutation p.E644A 0.31 tolerated(0.78) benign(0.008) TCGA-AA-A00N-01 6 152469351 152469351 G A SYNE1 Missense_Mutation p.R8269W 0.17 probably_damaging(0.973) TCGA-AA-A00N-01 6 152469448 152469448 C T SYNE1 Silent p.S8236S 0.11 TCGA-AA-A00N-01 6 152501303 152501303 G T SYNE1 Missense_Mutation p.L7810I 0.20 benign(0.412) TCGA-AA-A00N-01 6 152542695 152542695 C T SYNE1 Splice_Site p.X7175_splice 0.22 TCGA-AA-A00N-01 6 152631870 152631870 G A SYNE1 Nonsense_Mutation p.R5617* 0.22 TCGA-AA-A00N-01 6 152631996 152631996 C A SYNE1 Nonsense_Mutation p.E5575* 0.22 TCGA-AA-A00N-01 6 152651912 152651912 G A SYNE1 Silent p.V4636V 0.18 TCGA-AA-A00N-01 6 152652874 152652874 C A SYNE1 Nonsense_Mutation p.E4316* 0.19 TCGA-AA-A00N-01 6 152668310 152668310 C T SYNE1 Missense_Mutation p.D3988N 0.22 benign(0.016) TCGA-AA-A00N-01 6 152706918 152706918 G A SYNE1 Missense_Mutation p.A2848V 0.21 probably_damaging(0.998) TCGA-AA-A00N-01 6 152730342 152730342 T G SYNE1 Missense_Mutation p.K2134T 0.21 benign(0.018) TCGA-AA-A00N-01 6 152740842 152740842 C G SYNE1 Missense_Mutation p.Q1761H 0.34 benign(0.006) TCGA-AA-A00N-01 6 152756930 152756930 T G SYNE1 Intron 0.28 TCGA-AA-A00N-01 6 152768624 152768624 G A SYNE1 Missense_Mutation p.S1213F 0.25 possibly_damaging(0.498) TCGA-AA-A00N-01 6 152772233 152772233 C A SYNE1 Missense_Mutation p.E1045D 0.24 benign(0.05) TCGA-AA-A00N-01 6 152780005 152780005 C T SYNE1 Missense_Mutation p.E819K 0.24 benign(0.297) TCGA-AA-A00N-01 6 155116242 155116242 C T SCAF8 Missense_Mutation p.A192V 0.20 deleterious(0.01) unknown(0) TCGA-AA-A00N-01 6 155154365 155154365 A C SCAF8 Missense_Mutation p.N1218H 0.11 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-AA-A00N-01 6 155574087 155574087 G A TIAM2 Silent p.S1375S 0.20 TCGA-AA-A00N-01 6 155575144 155575144 G A TIAM2 Silent p.T1421T 0.09 TCGA-AA-A00N-01 6 155718080 155718080 A G NOX3 Missense_Mutation p.F533L 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 6 155776240 155776240 A C NOX3 Missense_Mutation p.F24L 0.28 tolerated(0.5) benign(0) TCGA-AA-A00N-01 6 158066849 158066849 C T ZDHHC14 Missense_Mutation p.S278F 0.19 deleterious(0.04) possibly_damaging(0.752) TCGA-AA-A00N-01 6 158900912 158900912 G A TULP4 Missense_Mutation p.A386T 0.11 tolerated(0.06) benign(0.064) TCGA-AA-A00N-01 6 158923299 158923299 C T TULP4 Silent p.G868G 0.17 TCGA-AA-A00N-01 6 159050772 159050772 C A TMEM181 Missense_Mutation p.F538L 0.06 deleterious(0.02) probably_damaging(0.988) TCGA-AA-A00N-01 6 159457677 159457677 A C TAGAP Missense_Mutation p.F460V 0.24 tolerated(0.7) benign(0.004) TCGA-AA-A00N-01 6 159644568 159644568 G A FNDC1 Missense_Mutation p.E259K 0.07 deleterious(0.02) unknown(0) TCGA-AA-A00N-01 6 160109272 160109272 C T SOD2 Missense_Mutation p.D77N 0.23 tolerated(0.07) benign(0.019) TCGA-AA-A00N-01 6 160199535 160199535 T G TCP1 3'UTR 0.33 TCGA-AA-A00N-01 6 160467595 160467595 T G IGF2R Missense_Mutation p.Y657D 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-AA-A00N-01 6 160480093 160480093 C A IGF2R Missense_Mutation p.F1018L 0.15 tolerated(0.52) benign(0.004) TCGA-AA-A00N-01 6 160913956 160913956 G A LPAL2 RNA 0.14 TCGA-AA-A00N-01 6 161010685 161010685 G A LPA Nonsense_Mutation p.R1283* 0.19 TCGA-AA-A00N-01 6 161027559 161027559 G A LPA Missense_Mutation p.A912V 0.26 tolerated(0.26) benign(0.363) TCGA-AA-A00N-01 6 161134082 161134082 G A PLG Missense_Mutation p.D158N 0.22 tolerated(0.07) possibly_damaging(0.853) TCGA-AA-A00N-01 6 1613087 1613087 G T FOXC1 3'UTR 0.20 TCGA-AA-A00N-01 6 16254924 16254924 C T GMPR Silent p.F141F 0.20 TCGA-AA-A00N-01 6 16295406 16295406 G A GMPR Missense_Mutation p.V343M 0.34 tolerated(0.12) benign(0.06) TCGA-AA-A00N-01 6 166743666 166743666 C T SFT2D1 Missense_Mutation p.V45I 0.21 tolerated(1) benign(0.001) TCGA-AA-A00N-01 6 166836896 166836896 G A RPS6KA2 Nonsense_Mutation p.R539* 0.15 TCGA-AA-A00N-01 6 166873029 166873029 C T RPS6KA2 Missense_Mutation p.R336Q 0.23 deleterious(0.05) benign(0.091) TCGA-AA-A00N-01 6 167435986 167435986 A G FGFR1OP Silent p.E223E 0.11 TCGA-AA-A00N-01 6 168377033 168377033 C A RP3-470B24.5 RNA 0.05 TCGA-AA-A00N-01 6 168910592 168910592 A G SMOC2 Intron 0.24 TCGA-AA-A00N-01 6 169646333 169646333 T C THBS2 Missense_Mutation p.E218G 0.19 deleterious(0.01) possibly_damaging(0.67) TCGA-AA-A00N-01 6 170105479 170105479 A G C6orf120 3'UTR 0.17 TCGA-AA-A00N-01 6 170176159 170176159 G A ERMARD Silent p.E506E 0.25 TCGA-AA-A00N-01 6 17765122 17765122 G T KIF13A Nonsense_Mutation p.S1546* 0.08 TCGA-AA-A00N-01 6 17781022 17781022 T C KIF13A Missense_Mutation p.H1262R 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 6 17826299 17826299 C T KIF13A Missense_Mutation p.R530Q 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A00N-01 6 18256059 18256059 C T DEK Missense_Mutation p.S159N 0.24 tolerated(0.43) benign(0.191) TCGA-AA-A00N-01 6 21596230 21596230 G T SOX4 3'UTR 0.23 TCGA-AA-A00N-01 6 21598016 21598016 T G SOX4 3'UTR 0.21 TCGA-AA-A00N-01 6 22294638 22294638 G A PRL Silent p.F68F 0.17 TCGA-AA-A00N-01 6 22570047 22570047 A C HDGFL1 Missense_Mutation p.E81D 0.15 deleterious(0) probably_damaging(0.978) TCGA-AA-A00N-01 6 24358441 24358441 C A KAAG1 3'UTR 0.20 TCGA-AA-A00N-01 6 24423996 24423996 C A MRS2 3'UTR 0.17 TCGA-AA-A00N-01 6 24502759 24502759 T G ALDH5A1 Missense_Mutation p.S121R 0.25 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 6 24658942 24658942 T G TDP2 Missense_Mutation p.E91A 0.29 tolerated(0.55) benign(0.009) TCGA-AA-A00N-01 6 24806592 24806592 A C FAM65B 3'UTR 0.23 TCGA-AA-A00N-01 6 25600615 25600615 C T LRRC16A Missense_Mutation p.R1065W 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-A00N-01 6 25653639 25653639 G A SCGN Missense_Mutation p.D38N 0.29 tolerated(0.05) benign(0.168) TCGA-AA-A00N-01 6 25669746 25669746 G A SCGN Missense_Mutation p.R115H 0.19 deleterious(0.03) benign(0.306) TCGA-AA-A00N-01 6 25701473 25701473 G T SCGN Missense_Mutation p.E247D 0.20 tolerated(0.15) benign(0) TCGA-AA-A00N-01 6 25849624 25849624 A G SLC17A3 Missense_Mutation p.V447A 0.27 tolerated(0.23) benign(0.027) TCGA-AA-A00N-01 6 25916062 25916062 G A SLC17A2 Missense_Mutation p.A322V 0.17 deleterious(0) probably_damaging(0.972) TCGA-AA-A00N-01 6 25917058 25917058 C T SLC17A2 Missense_Mutation p.R262Q 0.14 tolerated(0.62) benign(0.055) TCGA-AA-A00N-01 6 26240855 26240855 C T HIST1H4F Missense_Mutation p.R68W 0.07 tolerated(0.05) possibly_damaging(0.619) TCGA-AA-A00N-01 6 26446039 26446039 G A BTN3A3 Missense_Mutation p.D181N 0.21 tolerated(0.44) benign(0.007) TCGA-AA-A00N-01 6 26597330 26597330 G T ABT1 Missense_Mutation p.K40N 0.25 tolerated(0.09) benign(0.302) TCGA-AA-A00N-01 6 26598192 26598192 A C ABT1 Missense_Mutation p.K98Q 0.30 tolerated(0.26) probably_damaging(0.959) TCGA-AA-A00N-01 6 27277019 27277019 T C POM121L2 Silent p.G977G 0.18 TCGA-AA-A00N-01 6 27278339 27278339 A C POM121L2 Missense_Mutation p.I537M 0.07 deleterious(0.04) benign(0.115) TCGA-AA-A00N-01 6 27278342 27278342 C T POM121L2 Silent p.P536P 0.23 TCGA-AA-A00N-01 6 27418996 27418996 C A ZNF184 3'UTR 0.30 TCGA-AA-A00N-01 6 27420192 27420192 T G ZNF184 Missense_Mutation p.K382N 0.15 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 6 27775300 27775300 G A HIST1H2BL 3'UTR 0.14 TCGA-AA-A00N-01 6 27833126 27833126 C A HIST1H2AL 5'UTR 0.19 TCGA-AA-A00N-01 6 28056965 28056965 G A ZNF165 Missense_Mutation p.R392Q 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A00N-01 6 28228098 28228098 C T NKAPL Nonsense_Mutation p.R317* 0.27 TCGA-AA-A00N-01 6 28228102 28228102 T G NKAPL Missense_Mutation p.I318S 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 6 28228728 28228728 C T NKAPL 3'UTR 0.17 TCGA-AA-A00N-01 6 28253404 28253404 G A PGBD1 Missense_Mutation p.S158N 0.21 tolerated_low_confidence(0.53) benign(0) TCGA-AA-A00N-01 6 28334098 28334098 T C ZKSCAN3 3'UTR 0.24 TCGA-AA-A00N-01 6 28543836 28543836 C A SCAND3 Nonsense_Mutation p.E216* 0.12 TCGA-AA-A00N-01 6 28962771 28962771 G A ZNF311 3'UTR 0.13 TCGA-AA-A00N-01 6 2896378 2896378 G A SERPINB9 Missense_Mutation p.S72L 0.24 tolerated(0.15) benign(0.011) TCGA-AA-A00N-01 6 29012423 29012423 A C OR2W1 Missense_Mutation p.F177C 0.15 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 6 29012623 29012623 A G OR2W1 Silent p.V110V 0.11 TCGA-AA-A00N-01 6 29054843 29054843 G T OR2B3 Missense_Mutation p.F61L 0.13 deleterious(0.02) benign(0.391) TCGA-AA-A00N-01 6 29364501 29364501 G A OR12D2 Missense_Mutation p.E9K 0.30 deleterious(0.03) benign(0.053) TCGA-AA-A00N-01 6 29430007 29430007 C T OR2H1 Missense_Mutation p.S154L 0.21 deleterious(0) possibly_damaging(0.698) TCGA-AA-A00N-01 6 29430506 29430506 C T OR2H1 3'UTR 0.07 TCGA-AA-A00N-01 6 29431316 29431316 A C OR2H1 3'UTR 0.23 TCGA-AA-A00N-01 6 29591191 29591191 C T GABBR1 Missense_Mutation p.R285Q 0.26 deleterious(0) probably_damaging(0.915) TCGA-AA-A00N-01 6 29627429 29627429 A C MOG Missense_Mutation p.E141A 0.25 deleterious(0.01) benign(0.021) TCGA-AA-A00N-01 6 29911248 29911248 T C HLA-A Missense_Mutation p.Y183H 0.22 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-AA-A00N-01 6 30126365 30126365 G A TRIM10 Silent p.F189F 0.22 TCGA-AA-A00N-01 6 30131429 30131429 G T TRIM15 5'UTR 0.25 TCGA-AA-A00N-01 6 30164371 30164371 G A TRIM26 Silent p.V229V 0.35 TCGA-AA-A00N-01 6 30553368 30553368 C T ABCF1 Silent p.I503I 0.22 TCGA-AA-A00N-01 6 30638221 30638221 C T DHX16 Missense_Mutation p.R211H 0.20 deleterious(0) unknown(0) TCGA-AA-A00N-01 6 30652202 30652202 C T PPP1R18 Missense_Mutation p.E532K 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 6 30671249 30671249 T C MDC1 Missense_Mutation p.I1876M 0.18 tolerated(0.14) benign(0.017) TCGA-AA-A00N-01 6 30675778 30675778 C A MDC1 Nonsense_Mutation p.E860* 0.21 TCGA-AA-A00N-01 6 30918314 30918314 G T DPCR1 Missense_Mutation p.E691D 0.16 tolerated(0.47) benign(0.023) TCGA-AA-A00N-01 6 31106009 31106009 G A PSORS1C2 Missense_Mutation p.P44S 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A00N-01 6 31113235 31113235 G A CCHCR1 Missense_Mutation p.R577C 0.19 deleterious(0) probably_damaging(0.949) TCGA-AA-A00N-01 6 31118887 31118887 T C CCHCR1 Missense_Mutation p.T272A 0.22 deleterious(0.05) benign(0.031) TCGA-AA-A00N-01 6 31130549 31130549 G A TCF19 3'UTR 0.21 TCGA-AA-A00N-01 6 31371406 31371406 G T MICA 5'UTR 0.18 TCGA-AA-A00N-01 6 31513927 31513927 G A ATP6V1G2 Missense_Mutation p.R48C 0.27 deleterious(0.02) possibly_damaging(0.871) TCGA-AA-A00N-01 6 31598970 31598970 C T PRRC2A Silent p.G840G 0.15 TCGA-AA-A00N-01 6 31902013 31902013 G A C2 Silent p.S262S 0.21 TCGA-AA-A00N-01 6 31948550 31948550 G A STK19 Missense_Mutation p.D345N 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 6 32017225 32017225 G A TNXB 5'Flank 0.29 TCGA-AA-A00N-01 6 32021374 32021374 C T TNXB Missense_Mutation p.S2859N 0.22 benign(0.012) TCGA-AA-A00N-01 6 32056757 32056757 G A TNXB Missense_Mutation p.R862C 0.21 probably_damaging(0.995) TCGA-AA-A00N-01 6 32116902 32116902 A G PRRT1 3'UTR 0.31 TCGA-AA-A00N-01 6 32137755 32137755 G A AGPAT1 Missense_Mutation p.R223C 0.18 deleterious(0.04) benign(0.093) TCGA-AA-A00N-01 6 32180969 32180969 G A NOTCH4 Missense_Mutation p.A794V 0.06 deleterious(0.04) possibly_damaging(0.458) TCGA-AA-A00N-01 6 32307414 32307414 A G C6orf10 Silent p.G117G 0.21 TCGA-AA-A00N-01 6 32317559 32317559 G T C6orf10 Missense_Mutation p.L103I 0.23 tolerated_low_confidence(0.64) possibly_damaging(0.567) TCGA-AA-A00N-01 6 32818213 32818213 G A TAP1 Nonsense_Mutation p.R438* 0.15 TCGA-AA-A00N-01 6 32917660 32917660 G A HLA-DMA Missense_Mutation p.P127L 0.27 tolerated(0.1) probably_damaging(0.957) TCGA-AA-A00N-01 6 32918419 32918419 C T HLA-DMA Missense_Mutation p.E84K 0.20 deleterious(0.02) possibly_damaging(0.769) TCGA-AA-A00N-01 6 33145240 33145240 T C COL11A2 Silent p.G554G 0.14 TCGA-AA-A00N-01 6 33234351 33234351 T C VPS52 Missense_Mutation p.T422A 0.27 tolerated(0.12) benign(0.393) TCGA-AA-A00N-01 6 33236864 33236864 G A VPS52 Nonsense_Mutation p.R159* 0.23 TCGA-AA-A00N-01 6 33645293 33645293 C T ITPR3 Silent p.L1179L 0.16 TCGA-AA-A00N-01 6 33652577 33652577 G A ITPR3 Missense_Mutation p.A1722T 0.15 tolerated(0.3) benign(0.006) TCGA-AA-A00N-01 6 34004075 34004075 G A GRM4 Silent p.F604F 0.22 TCGA-AA-A00N-01 6 34101000 34101000 C T GRM4 Missense_Mutation p.D92N 0.19 tolerated(0.11) probably_damaging(0.999) TCGA-AA-A00N-01 6 3410512 3410512 C T SLC22A23 Missense_Mutation p.A275T 0.31 tolerated(0.11) probably_damaging(0.991) TCGA-AA-A00N-01 6 34497593 34497593 C T PACSIN1 Missense_Mutation p.H255Y 0.34 tolerated(0.07) benign(0.173) TCGA-AA-A00N-01 6 34831938 34831938 T C UHRF1BP1 Silent p.S1125S 0.22 TCGA-AA-A00N-01 6 35088394 35088394 T C TCP11 Missense_Mutation p.T262A 0.23 tolerated(0.3) benign(0.072) TCGA-AA-A00N-01 6 35088402 35088402 T C TCP11 Missense_Mutation p.K259R 0.24 tolerated(0.05) benign(0.248) TCGA-AA-A00N-01 6 35207612 35207612 A C SCUBE3 Missense_Mutation p.K305Q 0.30 tolerated(0.06) probably_damaging(0.955) TCGA-AA-A00N-01 6 35210953 35210953 G A SCUBE3 Missense_Mutation p.E617K 0.15 tolerated(1) benign(0.024) TCGA-AA-A00N-01 6 35803116 35803116 C T SRPK1 Missense_Mutation p.A645T 0.23 tolerated(0.07) benign(0.195) TCGA-AA-A00N-01 6 36040747 36040747 C A MAPK14 Missense_Mutation p.L135I 0.20 deleterious(0) probably_damaging(0.974) TCGA-AA-A00N-01 6 36297986 36297986 T C C6orf222 Missense_Mutation p.H161R 0.20 deleterious(0.01) possibly_damaging(0.702) TCGA-AA-A00N-01 6 36767827 36767827 G A CPNE5 Silent p.I68I 0.10 TCGA-AA-A00N-01 6 36940432 36940432 G A MTCH1 Intron 0.27 TCGA-AA-A00N-01 6 37186622 37186622 C A TMEM217 Missense_Mutation p.C62F 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 6 37426574 37426574 G A CMTR1 Missense_Mutation p.E322K 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A00N-01 6 37622653 37622653 T C MDGA1 Missense_Mutation p.Y212C 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 6 37626074 37626074 G A MDGA1 Missense_Mutation p.A110V 0.32 deleterious(0.01) possibly_damaging(0.793) TCGA-AA-A00N-01 6 38084399 38084399 A T ZFAND3 Missense_Mutation p.E138V 0.23 deleterious(0.02) benign(0.094) TCGA-AA-A00N-01 6 38820534 38820534 G A DNAH8 Missense_Mutation p.R1627H 0.22 possibly_damaging(0.849) TCGA-AA-A00N-01 6 38831767 38831767 G T DNAH8 Missense_Mutation p.K1926N 0.26 probably_damaging(0.99) TCGA-AA-A00N-01 6 38950227 38950227 G A DNAH8 Missense_Mutation p.D4097N 0.26 benign(0.126) TCGA-AA-A00N-01 6 39682534 39682534 C A KIF6 Missense_Mutation p.R62I 0.07 deleterious(0) possibly_damaging(0.637) TCGA-AA-A00N-01 6 39873466 39873466 C T MOCS1 3'UTR 0.26 TCGA-AA-A00N-01 6 40399597 40399597 T G LRFN2 Missense_Mutation p.K419T 0.20 deleterious(0.04) benign(0.313) TCGA-AA-A00N-01 6 4069009 4069009 A G FAM217A Missense_Mutation p.F483S 0.21 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 6 41250156 41250156 C T TREM1 Missense_Mutation p.R128H 0.18 tolerated(0.09) possibly_damaging(0.81) TCGA-AA-A00N-01 6 42796598 42796598 C T GLTSCR1L Missense_Mutation p.S176L 0.20 tolerated(0.08) probably_damaging(0.939) TCGA-AA-A00N-01 6 43099768 43099768 G A PTK7 Missense_Mutation p.R284H 0.20 tolerated_low_confidence(0.13) probably_damaging(0.909) TCGA-AA-A00N-01 6 43154154 43154154 C T CUL9 Silent p.G404G 0.19 TCGA-AA-A00N-01 6 43316351 43316351 C T ZNF318 Missense_Mutation p.R928H 0.30 probably_damaging(1) TCGA-AA-A00N-01 6 43604140 43604140 C T MAD2L1BP Silent p.S55S 0.25 TCGA-AA-A00N-01 6 44122178 44122178 C A TMEM63B Missense_Mutation p.S768Y 0.22 deleterious(0.03) benign(0.319) TCGA-AA-A00N-01 6 44197326 44197326 T C SLC29A1 Missense_Mutation p.Y38H 0.22 deleterious(0.02) probably_damaging(1) TCGA-AA-A00N-01 6 46135782 46135782 T C ENPP5 Missense_Mutation p.Y73C 0.16 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 6 46517936 46517936 T C CYP39A1 3'UTR 0.25 TCGA-AA-A00N-01 6 46656871 46656871 C T TDRD6 Missense_Mutation p.R336W 0.17 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 6 46658308 46658308 C T TDRD6 Missense_Mutation p.P815S 0.15 deleterious(0.03) possibly_damaging(0.687) TCGA-AA-A00N-01 6 46660396 46660396 C A TDRD6 Missense_Mutation p.L1511I 0.20 tolerated(0.22) possibly_damaging(0.889) TCGA-AA-A00N-01 6 46660721 46660721 C T TDRD6 Missense_Mutation p.A1619V 0.18 tolerated(0.05) benign(0.027) TCGA-AA-A00N-01 6 46661296 46661296 T C TDRD6 Missense_Mutation p.Y1811H 0.30 tolerated(0.21) possibly_damaging(0.646) TCGA-AA-A00N-01 6 46678321 46678321 C A PLA2G7 Missense_Mutation p.K246N 0.25 tolerated(0.44) benign(0.306) TCGA-AA-A00N-01 6 46726689 46726689 C A ANKRD66 3'UTR 0.29 TCGA-AA-A00N-01 6 46826408 46826408 G A GPR116 Missense_Mutation p.R1078C 0.27 tolerated(0.13) possibly_damaging(0.67) TCGA-AA-A00N-01 6 46826507 46826507 G A GPR116 Missense_Mutation p.R1045W 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 6 46834864 46834864 G A GPR116 Silent p.H544H 0.09 TCGA-AA-A00N-01 6 46977920 46977920 C T GPR110 Silent p.P417P 0.29 TCGA-AA-A00N-01 6 47544821 47544821 A C CD2AP Silent p.I295I 0.16 TCGA-AA-A00N-01 6 47847084 47847084 G A PTCHD4 Missense_Mutation p.S499L 0.17 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 6 47976742 47976742 G A PTCHD4 Missense_Mutation p.L179F 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A00N-01 6 48036258 48036258 A G PTCHD4 Missense_Mutation p.F45S 0.17 deleterious(0) probably_damaging(0.958) TCGA-AA-A00N-01 6 4935846 4935846 C T CDYL Silent p.D263D 0.17 TCGA-AA-A00N-01 6 49399379 49399379 C A MUT 3'UTR 0.25 TCGA-AA-A00N-01 6 4943786 4943786 C T CDYL Silent p.F376F 0.08 TCGA-AA-A00N-01 6 49604533 49604533 G A RHAG 5'UTR 0.17 TCGA-AA-A00N-01 6 49936524 49936524 G A DEFB113 Missense_Mutation p.R39C 0.20 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-AA-A00N-01 6 4995409 4995409 C T RPP40 Missense_Mutation p.R332Q 0.27 tolerated(0.38) benign(0.003) TCGA-AA-A00N-01 6 51524753 51524753 C A PKHD1 Nonsense_Mutation p.E3391* 0.13 TCGA-AA-A00N-01 6 51900426 51900426 C A PKHD1 Missense_Mutation p.S1064I 0.20 tolerated(0.1) benign(0.363) TCGA-AA-A00N-01 6 51924779 51924779 C T PKHD1 Missense_Mutation p.A394T 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 51936958 51936958 T G PKHD1 Missense_Mutation p.K186T 0.21 tolerated(0.28) benign(0.081) TCGA-AA-A00N-01 6 52656634 52656634 C A GSTA1 3'UTR 0.22 TCGA-AA-A00N-01 6 52761619 52761619 C A GSTA3 Missense_Mutation p.K218N 0.10 tolerated(0.22) benign(0.014) TCGA-AA-A00N-01 6 52764809 52764809 G A GSTA3 Nonsense_Mutation p.R113* 0.17 TCGA-AA-A00N-01 6 52902735 52902735 A G ICK Splice_Site p.X52_splice 0.25 TCGA-AA-A00N-01 6 54130860 54130860 C T MLIP 3'UTR 0.30 TCGA-AA-A00N-01 6 5431351 5431351 G T FARS2 Nonsense_Mutation p.E284* 0.31 TCGA-AA-A00N-01 6 55145214 55145214 G A HCRTR2 Silent p.A359A 0.16 TCGA-AA-A00N-01 6 56033093 56033093 C T COL21A1 Silent p.T343T 0.13 TCGA-AA-A00N-01 6 56035830 56035830 C A COL21A1 Missense_Mutation p.R246I 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-AA-A00N-01 6 56044733 56044733 C A COL21A1 Missense_Mutation p.D95Y 0.06 tolerated(1) benign(0.285) TCGA-AA-A00N-01 6 56047428 56047428 C T COL21A1 5'UTR 0.19 TCGA-AA-A00N-01 6 56354333 56354333 G A DST Silent p.I4321I 0.21 TCGA-AA-A00N-01 6 56358951 56358951 C T DST Missense_Mutation p.E4128K 0.27 possibly_damaging(0.664) TCGA-AA-A00N-01 6 56417416 56417416 G A DST Nonsense_Mutation p.R2769* 0.22 TCGA-AA-A00N-01 6 564562 564562 G A EXOC2 Silent p.H550H 0.18 TCGA-AA-A00N-01 6 56457009 56457009 T G DST Missense_Mutation p.N1669H 0.24 possibly_damaging(0.906) TCGA-AA-A00N-01 6 56469246 56469246 T C DST Intron 0.19 TCGA-AA-A00N-01 6 56470766 56470766 T G DST Intron 0.17 TCGA-AA-A00N-01 6 56505384 56505384 C T DST Missense_Mutation p.E146K 0.23 benign(0.135) TCGA-AA-A00N-01 6 56819278 56819278 G A BEND6 5'Flank 0.17 TCGA-AA-A00N-01 6 57012230 57012230 G T ZNF451 Missense_Mutation p.M449I 0.20 tolerated(0.21) benign(0.001) TCGA-AA-A00N-01 6 57185271 57185271 A C PRIM2 Missense_Mutation p.E57D 0.25 tolerated(0.12) benign(0.233) TCGA-AA-A00N-01 6 57512513 57512513 C A PRIM2 3'UTR 0.09 TCGA-AA-A00N-01 6 6222358 6222358 G T F13A1 Missense_Mutation p.F340L 0.13 tolerated(0.61) benign(0.289) TCGA-AA-A00N-01 6 64004842 64004842 C A LGSN Nonsense_Mutation p.E47* 0.04 TCGA-AA-A00N-01 6 64394185 64394185 T C PHF3 Missense_Mutation p.S188P 0.23 tolerated_low_confidence(0.57) benign(0) TCGA-AA-A00N-01 6 64421713 64421713 G T PHF3 Missense_Mutation p.R1410I 0.19 deleterious(0) probably_damaging(0.957) TCGA-AA-A00N-01 6 65301715 65301715 G A EYS Nonsense_Mutation p.R1349* 0.26 TCGA-AA-A00N-01 6 6626553 6626553 A G LY86 Missense_Mutation p.D84G 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A00N-01 6 69949045 69949045 T G BAI3 Missense_Mutation p.L914R 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A00N-01 6 70950406 70950406 C A COL9A1 Nonsense_Mutation p.E689* 0.21 TCGA-AA-A00N-01 6 71004056 71004056 C T COL9A1 Silent p.S170S 0.25 TCGA-AA-A00N-01 6 71004213 71004213 C T COL9A1 Missense_Mutation p.R118Q 0.31 unknown(0) TCGA-AA-A00N-01 6 71666039 71666039 G T B3GAT2 Missense_Mutation p.P32T 0.27 tolerated_low_confidence(0.67) benign(0.052) TCGA-AA-A00N-01 6 72892232 72892232 C A RIMS1 Missense_Mutation p.T353N 0.16 tolerated(0.49) possibly_damaging(0.528) TCGA-AA-A00N-01 6 73751664 73751664 C T KCNQ5 Silent p.F165F 0.22 TCGA-AA-A00N-01 6 73751728 73751728 C T KCNQ5 Nonsense_Mutation p.R187* 0.24 TCGA-AA-A00N-01 6 74519866 74519866 G T CD109 Missense_Mutation p.R1172I 0.15 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 6 74520848 74520848 G T CD109 Missense_Mutation p.R1227L 0.13 tolerated(0.41) benign(0.002) TCGA-AA-A00N-01 6 7562916 7562916 A G DSP Missense_Mutation p.D210G 0.27 possibly_damaging(0.799) TCGA-AA-A00N-01 6 75839943 75839943 C T COL12A1 Missense_Mutation p.R2025H 0.22 probably_damaging(0.996) TCGA-AA-A00N-01 6 75893170 75893170 T C COL12A1 Missense_Mutation p.K496R 0.24 benign(0.003) TCGA-AA-A00N-01 6 75968619 75968619 A C TMEM30A Missense_Mutation p.F257V 0.14 deleterious(0) possibly_damaging(0.472) TCGA-AA-A00N-01 6 76072475 76072475 C A FILIP1 Missense_Mutation p.E145D 0.33 deleterious(0.02) possibly_damaging(0.785) TCGA-AA-A00N-01 6 76405579 76405579 C A SENP6 Missense_Mutation p.S712Y 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 6 76596608 76596608 A C MYO6 Missense_Mutation p.K852T 0.22 tolerated(0.15) unknown(0) TCGA-AA-A00N-01 6 76599945 76599945 G A MYO6 Missense_Mutation p.E944K 0.04 deleterious(0.04) benign(0.021) TCGA-AA-A00N-01 6 76623878 76623878 G A MYO6 Missense_Mutation p.D1180N 0.27 tolerated(0.15) possibly_damaging(0.636) TCGA-AA-A00N-01 6 76728558 76728558 G A IMPG1 Silent p.F228F 0.26 TCGA-AA-A00N-01 6 78172578 78172578 C T HTR1B Silent p.S181S 0.17 TCGA-AA-A00N-01 6 7879329 7879329 A C BMP6 Missense_Mutation p.K409N 0.30 deleterious(0.02) possibly_damaging(0.746) TCGA-AA-A00N-01 6 79665344 79665344 A C PHIP Missense_Mutation p.L1280V 0.12 tolerated(0.51) probably_damaging(0.978) TCGA-AA-A00N-01 6 79692630 79692630 T G PHIP Missense_Mutation p.K914N 0.21 tolerated(0.12) probably_damaging(0.966) TCGA-AA-A00N-01 6 79727259 79727259 G A PHIP Missense_Mutation p.R346W 0.17 deleterious(0) possibly_damaging(0.732) TCGA-AA-A00N-01 6 80197179 80197179 C T LCA5 Missense_Mutation p.A546T 0.19 tolerated(0.69) benign(0.015) TCGA-AA-A00N-01 6 80203459 80203459 C A LCA5 Silent p.S243S 0.16 TCGA-AA-A00N-01 6 83848302 83848302 T G DOPEY1 Missense_Mutation p.F1514C 0.28 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 6 83874593 83874593 T G PGM3 3'Flank 0.29 TCGA-AA-A00N-01 6 84233863 84233863 A C PRSS35 Missense_Mutation p.K235Q 0.22 tolerated(0.49) benign(0.021) TCGA-AA-A00N-01 6 84303204 84303204 G T SNAP91 Silent p.I563I 0.18 TCGA-AA-A00N-01 6 84629139 84629139 C A CYB5R4 Missense_Mutation p.S177Y 0.16 tolerated(0.05) benign(0.035) TCGA-AA-A00N-01 6 86322544 86322544 C A SYNCRIP 3'Flank 0.19 TCGA-AA-A00N-01 6 87795342 87795342 T C CGA 3'UTR 0.13 TCGA-AA-A00N-01 6 87968773 87968773 C A ZNF292 Missense_Mutation p.S1809Y 0.18 tolerated_low_confidence(0.67) benign(0.14) TCGA-AA-A00N-01 6 88240594 88240594 A C RARS2 Missense_Mutation p.F227V 0.30 deleterious(0) probably_damaging(0.973) TCGA-AA-A00N-01 6 88255353 88255353 G A RARS2 Silent p.G172G 0.19 TCGA-AA-A00N-01 6 88326097 88326097 C A ORC3 Silent p.I313I 0.16 TCGA-AA-A00N-01 6 88385302 88385302 C T AKIRIN2 3'UTR 0.17 TCGA-AA-A00N-01 6 89907868 89907868 C T GABRR1 Missense_Mutation p.R148Q 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-AA-A00N-01 6 90354764 90354764 G T MDN1 Silent p.I5524I 0.11 TCGA-AA-A00N-01 6 90410003 90410003 C A MDN1 Missense_Mutation p.K2883N 0.27 benign(0.28) TCGA-AA-A00N-01 6 90424355 90424355 A C MDN1 Missense_Mutation p.L2326V 0.35 benign(0.059) TCGA-AA-A00N-01 6 90461277 90461277 G A MDN1 Missense_Mutation p.R1034W 0.10 possibly_damaging(0.889) TCGA-AA-A00N-01 6 90468001 90468001 C A MDN1 Missense_Mutation p.R892I 0.19 probably_damaging(0.972) TCGA-AA-A00N-01 6 90503486 90503486 C A MDN1 Nonsense_Mutation p.E284* 0.23 TCGA-AA-A00N-01 6 90576869 90576869 G A CASP8AP2 RNA 0.17 TCGA-AA-A00N-01 6 93953157 93953157 C T EPHA7 Missense_Mutation p.G995D 0.21 tolerated(0.11) probably_damaging(0.999) TCGA-AA-A00N-01 6 93965643 93965643 C T EPHA7 Missense_Mutation p.R762H 0.12 tolerated(0.09) benign(0.005) TCGA-AA-A00N-01 6 94066685 94066685 C T EPHA7 Silent p.G358G 0.16 TCGA-AA-A00N-01 6 94120688 94120688 T C EPHA7 Silent p.E121E 0.20 TCGA-AA-A00N-01 6 96652213 96652214 - T FUT9 3'UTR 0.30 TCGA-AA-A00N-01 6 96652491 96652491 T G FUT9 3'UTR 0.22 TCGA-AA-A00N-01 6 96653854 96653854 G A FUT9 3'UTR 0.22 TCGA-AA-A00N-01 6 96656265 96656265 G T FUT9 3'UTR 0.21 TCGA-AA-A00N-01 6 96656784 96656785 - G FUT9 3'UTR 0.19 TCGA-AA-A00N-01 6 96657449 96657449 T G FUT9 3'UTR 0.25 TCGA-AA-A00N-01 6 96659946 96659946 T G FUT9 3'UTR 0.18 TCGA-AA-A00N-01 6 96661616 96661616 T - FUT9 3'UTR 0.24 TCGA-AA-A00N-01 6 97339024 97339024 C T NDUFAF4 Missense_Mutation p.E162K 0.20 tolerated(1) benign(0.001) TCGA-AA-A00N-01 6 99893889 99893889 A C USP45 Missense_Mutation p.L587V 0.08 tolerated(0.46) benign(0.345) TCGA-AA-A00N-01 7 100174628 100174628 G A LRCH4 Silent p.N455N 0.09 TCGA-AA-A00N-01 7 100231141 100231141 C T TFR2 Missense_Mutation p.G171E 0.15 tolerated(1) benign(0.008) TCGA-AA-A00N-01 7 100334970 100334970 G A ZAN Missense_Mutation p.R204H 0.27 benign(0.229) TCGA-AA-A00N-01 7 100366291 100366291 C T ZAN Silent p.G1700G 0.18 TCGA-AA-A00N-01 7 100373298 100373298 G A ZAN Missense_Mutation p.S2011N 0.30 unknown(0) TCGA-AA-A00N-01 7 100486236 100486236 G T SRRT 3'UTR 0.20 TCGA-AA-A00N-01 7 100674975 100674975 C T MUC17 Missense_Mutation p.S93L 0.24 benign(0.01) TCGA-AA-A00N-01 7 100678561 100678561 G A MUC17 Silent p.T1288T 0.13 TCGA-AA-A00N-01 7 100686141 100686141 T C MUC17 Missense_Mutation p.L3815S 0.20 benign(0) TCGA-AA-A00N-01 7 100693864 100693864 G A MUC17 Silent p.E4274E 0.25 TCGA-AA-A00N-01 7 100733508 100733508 G A TRIM56 3'UTR 0.21 TCGA-AA-A00N-01 7 100882956 100882956 G A FIS1 3'UTR 0.28 TCGA-AA-A00N-01 7 101926027 101926027 C T SH2B2 5'Flank 0.21 TCGA-AA-A00N-01 7 102112729 102112729 C T LRWD1 Silent p.L503L 0.19 TCGA-AA-A00N-01 7 102112917 102112917 C T LRWD1 Silent p.G517G 0.13 TCGA-AA-A00N-01 7 102113835 102113835 C A POLR2J 3'UTR 0.33 TCGA-AA-A00N-01 7 102850744 102850744 G A DPY19L2P2 RNA 0.22 TCGA-AA-A00N-01 7 102953082 102953082 G A DNAJC2 Silent p.V600V 0.17 TCGA-AA-A00N-01 7 103197580 103197580 G A RELN Silent p.L1881L 0.23 TCGA-AA-A00N-01 7 103234301 103234301 T C RELN Missense_Mutation p.Y1247C 0.22 deleterious(0.04) probably_damaging(0.976) TCGA-AA-A00N-01 7 104722146 104722146 A C KMT2E Missense_Mutation p.E420D 0.14 deleterious(0.04) possibly_damaging(0.523) TCGA-AA-A00N-01 7 104746993 104746993 G A KMT2E Missense_Mutation p.R874Q 0.22 deleterious_low_confidence(0) benign(0.238) TCGA-AA-A00N-01 7 105187781 105187781 G A RINT1 Splice_Site p.X280_splice 0.08 TCGA-AA-A00N-01 7 106797436 106797436 C T PRKAR2B Missense_Mutation p.S309L 0.22 tolerated(0.33) benign(0.003) TCGA-AA-A00N-01 7 107114579 107114579 A G GPR22 Missense_Mutation p.D25G 0.09 tolerated(0.65) benign(0.002) TCGA-AA-A00N-01 7 107198468 107198468 T G COG5 Missense_Mutation p.K94Q 0.15 tolerated(0.08) possibly_damaging(0.692) TCGA-AA-A00N-01 7 107216855 107216855 C T DUS4L Missense_Mutation p.A175V 0.24 tolerated(1) benign(0.019) TCGA-AA-A00N-01 7 107389385 107389385 G A CBLL1 Missense_Mutation p.R25Q 0.05 tolerated_low_confidence(0.21) possibly_damaging(0.811) TCGA-AA-A00N-01 7 107427840 107427840 C T SLC26A3 Missense_Mutation p.D284N 0.18 tolerated(0.5) benign(0.008) TCGA-AA-A00N-01 7 107696257 107696257 G A LAMB4 Missense_Mutation p.A1192V 0.26 tolerated(0.23) benign(0.005) TCGA-AA-A00N-01 7 107698277 107698277 G A LAMB4 Missense_Mutation p.P1127S 0.32 tolerated(0.65) benign(0.015) TCGA-AA-A00N-01 7 108112984 108112984 T C PNPLA8 Missense_Mutation p.Y737C 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 7 1095015 1095015 C T GPR146 5'UTR 0.30 TCGA-AA-A00N-01 7 11053535 11053535 T C PHF14 Splice_Site p.X402_splice 0.23 TCGA-AA-A00N-01 7 111368300 111368300 G T DOCK4 3'UTR 0.36 TCGA-AA-A00N-01 7 111368486 111368486 C T DOCK4 Silent p.P1915P 0.27 TCGA-AA-A00N-01 7 111629104 111629104 G A DOCK4 Missense_Mutation p.R144C 0.17 deleterious(0) possibly_damaging(0.776) TCGA-AA-A00N-01 7 113517790 113517790 G A PPP1R3A Silent p.V1119V 0.10 TCGA-AA-A00N-01 7 113558388 113558388 T C PPP1R3A Missense_Mutation p.N222D 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 7 114655785 114655785 C T MDFIC Silent p.F288F 0.19 TCGA-AA-A00N-01 7 115582052 115582052 C A TFEC Silent p.V186V 0.19 TCGA-AA-A00N-01 7 11581115 11581115 C T THSD7A Missense_Mutation p.E585K 0.20 tolerated(0.16) benign(0.11) TCGA-AA-A00N-01 7 116339821 116339821 T G MET Missense_Mutation p.F228C 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A00N-01 7 116596476 116596476 G A ST7-OT4 Splice_Site p.X24_splice 0.15 TCGA-AA-A00N-01 7 116830189 116830189 C T ST7 Intron 0.17 TCGA-AA-A00N-01 7 117019990 117019990 A G ASZ1 Splice_Site p.X352_splice 0.26 TCGA-AA-A00N-01 7 117024913 117024913 G A ASZ1 Missense_Mutation p.A185V 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 7 117864882 117864882 G A ANKRD7 5'UTR 0.23 TCGA-AA-A00N-01 7 120596261 120596261 C A ING3 Intron 0.21 TCGA-AA-A00N-01 7 120607994 120607994 G A ING3 Missense_Mutation p.R188Q 0.25 tolerated(0.2) probably_damaging(0.945) TCGA-AA-A00N-01 7 120704295 120704295 A C CPED1 Missense_Mutation p.N182H 0.11 deleterious(0) probably_damaging(0.972) TCGA-AA-A00N-01 7 120935621 120935621 C T CPED1 Missense_Mutation p.S999L 0.21 tolerated(0.07) probably_damaging(0.918) TCGA-AA-A00N-01 7 121651787 121651787 C A PTPRZ1 Missense_Mutation p.S896Y 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.526) TCGA-AA-A00N-01 7 121653128 121653128 C A PTPRZ1 Missense_Mutation p.S1343Y 0.06 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-AA-A00N-01 7 122342057 122342057 C T RNF148 Missense_Mutation p.E250K 0.17 deleterious(0) probably_damaging(0.98) TCGA-AA-A00N-01 7 123143151 123143151 C A IQUB Missense_Mutation p.Q238H 0.19 tolerated(0.09) benign(0.001) TCGA-AA-A00N-01 7 123334886 123334886 C T WASL Missense_Mutation p.D237N 0.13 deleterious(0.02) unknown(0) TCGA-AA-A00N-01 7 12397065 12397065 G A VWDE Silent p.F1117F 0.22 TCGA-AA-A00N-01 7 126173033 126173033 A C GRM8 Missense_Mutation p.F801L 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-AA-A00N-01 7 126173855 126173855 T C GRM8 Silent p.K527K 0.29 TCGA-AA-A00N-01 7 126544692 126544692 C A GRM8 Missense_Mutation p.R258I 0.15 tolerated(0.07) benign(0.373) TCGA-AA-A00N-01 7 126746620 126746620 C T GRM8 Silent p.S219S 0.26 TCGA-AA-A00N-01 7 127670216 127670216 C T LRRC4 Missense_Mutation p.E160K 0.12 tolerated(0.17) benign(0.408) TCGA-AA-A00N-01 7 128445857 128445857 C T CCDC136 Missense_Mutation p.R331C 0.27 deleterious(0.02) probably_damaging(0.987) TCGA-AA-A00N-01 7 128482937 128482937 G A FLNC Missense_Mutation p.D827N 0.15 deleterious(0.04) probably_damaging(1) TCGA-AA-A00N-01 7 128527272 128527272 G A KCP RNA 0.34 TCGA-AA-A00N-01 7 128804397 128804397 T G TSPAN33 Missense_Mutation p.F149C 0.32 deleterious(0) possibly_damaging(0.886) TCGA-AA-A00N-01 7 130025155 130025155 A C CPA1 Missense_Mutation p.K319T 0.21 tolerated(1) benign(0.015) TCGA-AA-A00N-01 7 130562225 130562225 G T MIR29A RNA 0.24 TCGA-AA-A00N-01 7 131866933 131866933 C T PLXNA4 Missense_Mutation p.A1059T 0.25 tolerated(1) benign(0.002) TCGA-AA-A00N-01 7 132192500 132192500 G A PLXNA4 Missense_Mutation p.A318V 0.15 deleterious(0) benign(0.082) TCGA-AA-A00N-01 7 132192787 132192787 G A PLXNA4 Silent p.F222F 0.28 TCGA-AA-A00N-01 7 133168806 133168806 G T EXOC4 Intron 0.17 TCGA-AA-A00N-01 7 133859362 133859362 C A LRGUK Missense_Mutation p.L332I 0.21 tolerated(0.07) benign(0.216) TCGA-AA-A00N-01 7 134642974 134642974 C T CALD1 Missense_Mutation p.S665L 0.21 tolerated(0.14) benign(0.134) TCGA-AA-A00N-01 7 134730568 134730568 G T AGBL3 Nonsense_Mutation p.E583* 0.23 TCGA-AA-A00N-01 7 134851541 134851541 G A C7orf49 Missense_Mutation p.S99L 0.23 tolerated(0.2) probably_damaging(0.994) TCGA-AA-A00N-01 7 134890782 134890782 C T WDR91 Missense_Mutation p.R208Q 0.17 tolerated(0.12) benign(0.002) TCGA-AA-A00N-01 7 135122949 135122949 C T CNOT4 Missense_Mutation p.R44Q 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-AA-A00N-01 7 135412292 135412292 G A SLC13A4 5'UTR 0.23 TCGA-AA-A00N-01 7 136699591 136699591 G T CHRM2 5'UTR 0.34 TCGA-AA-A00N-01 7 136699767 136699767 G A CHRM2 Missense_Mutation p.R52H 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A00N-01 7 136701480 136701480 G T CHRM2 3'UTR 0.35 TCGA-AA-A00N-01 7 138189046 138189046 C T TRIM24 Missense_Mutation p.R126C 0.15 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 7 138444564 138444564 C T ATP6V0A4 Missense_Mutation p.R191Q 0.25 deleterious(0) probably_damaging(0.985) TCGA-AA-A00N-01 7 138845748 138845748 G T TTC26 Nonsense_Mutation p.E258* 0.17 TCGA-AA-A00N-01 7 138951117 138951117 C A UBN2 Missense_Mutation p.F478L 0.04 deleterious(0.04) probably_damaging(0.991) TCGA-AA-A00N-01 7 13949260 13949260 C T ETV1 Missense_Mutation p.D313N 0.14 deleterious(0.01) possibly_damaging(0.779) TCGA-AA-A00N-01 7 13978866 13978866 A C ETV1 Missense_Mutation p.F81V 0.16 deleterious(0) possibly_damaging(0.685) TCGA-AA-A00N-01 7 140154121 140154121 T G MKRN1 3'UTR 0.50 TCGA-AA-A00N-01 7 140386832 140386832 A C ADCK2 Missense_Mutation p.N450H 0.22 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 7 141427274 141427274 G T WEE2 Intron 0.17 TCGA-AA-A00N-01 7 141445300 141445300 C T SSBP1 Nonsense_Mutation p.R107* 0.22 TCGA-AA-A00N-01 7 141619447 141619447 C A OR9A4 Missense_Mutation p.L258I 0.22 tolerated(0.31) probably_damaging(0.999) TCGA-AA-A00N-01 7 141672928 141672928 C A TAS2R38 Missense_Mutation p.D188Y 0.16 deleterious(0.01) possibly_damaging(0.652) TCGA-AA-A00N-01 7 141755409 141755409 C T MGAM Silent p.I1122I 0.20 TCGA-AA-A00N-01 7 141896544 141896544 G T RP11-1220K2.2 Missense_Mutation p.E1520D 0.17 possibly_damaging(0.767) TCGA-AA-A00N-01 7 142561847 142561847 C T EPHB6 Missense_Mutation p.R97W 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 7 142566488 142566488 C T EPHB6 Silent p.F759F 0.27 TCGA-AA-A00N-01 7 142572914 142572914 C T TRPV6 Missense_Mutation p.A376T 0.21 deleterious(0.01) possibly_damaging(0.78) TCGA-AA-A00N-01 7 142574180 142574180 C T TRPV6 Missense_Mutation p.G248E 0.15 deleterious(0) probably_damaging(0.975) TCGA-AA-A00N-01 7 142575012 142575012 C T TRPV6 Missense_Mutation p.A124T 0.11 deleterious(0.01) probably_damaging(0.942) TCGA-AA-A00N-01 7 142575524 142575524 C T TRPV6 Missense_Mutation p.A77T 0.16 tolerated(0.09) possibly_damaging(0.619) TCGA-AA-A00N-01 7 142611854 142611854 C T TRPV5 Missense_Mutation p.R492H 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A00N-01 7 142655011 142655011 C T KEL Missense_Mutation p.R192Q 0.22 tolerated(0.76) benign(0.011) TCGA-AA-A00N-01 7 142659298 142659298 C A KEL 5'UTR 0.22 TCGA-AA-A00N-01 7 142829283 142829283 C T PIP Missense_Mutation p.A25V 0.06 tolerated(1) benign(0.018) TCGA-AA-A00N-01 7 142880834 142880834 C T TAS2R39 Missense_Mutation p.A108V 0.20 tolerated(0.75) benign(0.002) TCGA-AA-A00N-01 7 143029829 143029829 G A CLCN1 Missense_Mutation p.E422K 0.32 deleterious(0) probably_damaging(0.981) TCGA-AA-A00N-01 7 143141092 143141092 G A TAS2R60 Missense_Mutation p.D183N 0.20 tolerated(1) benign(0) TCGA-AA-A00N-01 7 143175617 143175617 G A TAS2R41 Missense_Mutation p.G218R 0.20 tolerated(0.54) benign(0.026) TCGA-AA-A00N-01 7 143771878 143771878 C T OR2A25 Missense_Mutation p.A189V 0.24 tolerated(0.07) benign(0.034) TCGA-AA-A00N-01 7 143883964 143883964 A C ARHGEF35 3'UTR 0.14 TCGA-AA-A00N-01 7 143929609 143929609 C T OR2A42 Missense_Mutation p.E110K 0.15 deleterious(0.01) possibly_damaging(0.648) TCGA-AA-A00N-01 7 144060908 144060908 G T ARHGEF5 Missense_Mutation p.W382C 0.15 deleterious(0.01) possibly_damaging(0.781) TCGA-AA-A00N-01 7 144096925 144096925 C T NOBOX Missense_Mutation p.R360Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 7 148506185 148506185 C T EZH2 Missense_Mutation p.E725K 0.16 deleterious(0) possibly_damaging(0.723) TCGA-AA-A00N-01 7 148801955 148801955 G A ZNF425 Silent p.D336D 0.26 TCGA-AA-A00N-01 7 148947266 148947266 G A ZNF212 Missense_Mutation p.R14H 0.09 tolerated(0.14) benign(0.012) TCGA-AA-A00N-01 7 148964011 148964011 C G ZNF783 Silent p.G174G 0.16 TCGA-AA-A00N-01 7 149493827 149493827 A G SSPO RNA 0.32 TCGA-AA-A00N-01 7 150174599 150174599 G T GIMAP8 Missense_Mutation p.D577Y 0.11 deleterious(0) probably_damaging(0.986) TCGA-AA-A00N-01 7 150439591 150439591 C T GIMAP5 Missense_Mutation p.R122C 0.20 deleterious(0.04) possibly_damaging(0.726) TCGA-AA-A00N-01 7 150649786 150649786 C T KCNH2 Silent p.S428S 0.22 TCGA-AA-A00N-01 7 150752456 150752456 A C CDK5 Missense_Mutation p.V163G 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 7 150825688 150825688 G A AGAP3 Missense_Mutation p.G415S 0.31 tolerated(0.34) possibly_damaging(0.856) TCGA-AA-A00N-01 7 150840925 150840925 T C AGAP3 Silent p.H877H 0.22 TCGA-AA-A00N-01 7 150845834 150845834 G A GBX1 Nonsense_Mutation p.R312* 0.25 TCGA-AA-A00N-01 7 150936763 150936763 C A SMARCD3 Missense_Mutation p.D415Y 0.16 deleterious(0) possibly_damaging(0.729) TCGA-AA-A00N-01 7 151700048 151700048 G A GALNTL5 Missense_Mutation p.R303Q 0.19 deleterious(0.04) probably_damaging(0.976) TCGA-AA-A00N-01 7 151836798 151836798 C T KMT2C Missense_Mutation p.E4808K 0.06 possibly_damaging(0.875) TCGA-AA-A00N-01 7 151846091 151846091 G A KMT2C Silent p.I4307I 0.22 TCGA-AA-A00N-01 7 151860293 151860293 C T KMT2C Missense_Mutation p.D3457N 0.23 possibly_damaging(0.764) TCGA-AA-A00N-01 7 151945598 151945598 C A KMT2C Missense_Mutation p.D641Y 0.15 benign(0.285) TCGA-AA-A00N-01 7 152520429 152520429 G A ACTR3B Silent p.E229E 0.06 TCGA-AA-A00N-01 7 154767948 154767948 C T PAXIP1 Missense_Mutation p.E178K 0.21 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 7 154860846 154860846 T C HTR5A-AS1 3'UTR 0.14 TCGA-AA-A00N-01 7 155301672 155301672 C T CNPY1 Missense_Mutation p.A21T 0.20 tolerated(0.11) probably_damaging(0.94) TCGA-AA-A00N-01 7 157000225 157000225 G A UBE3C Missense_Mutation p.E518K 0.16 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 7 158486103 158486103 C A NCAPG2 Missense_Mutation p.K55N 0.20 tolerated(0.39) benign(0.196) TCGA-AA-A00N-01 7 16714053 16714053 C T BZW2 Silent p.F25F 0.05 TCGA-AA-A00N-01 7 17836457 17836457 A C SNX13 Missense_Mutation p.I873M 0.30 tolerated(0.09) benign(0.016) TCGA-AA-A00N-01 7 17841230 17841230 G A SNX13 Missense_Mutation p.S760L 0.22 deleterious(0.05) benign(0.178) TCGA-AA-A00N-01 7 1787555 1787555 A C ELFN1 3'UTR 0.22 TCGA-AA-A00N-01 7 18788706 18788706 G A HDAC9 Missense_Mutation p.R663Q 0.23 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 7 20441372 20441372 A C ITGB8 Missense_Mutation p.K437T 0.31 tolerated(0.35) benign(0.008) TCGA-AA-A00N-01 7 20687261 20687261 T C ABCB5 Missense_Mutation p.V362A 0.33 deleterious(0) benign(0.197) TCGA-AA-A00N-01 7 21640753 21640753 G A DNAH11 Nonsense_Mutation p.W1127* 0.31 TCGA-AA-A00N-01 7 21730462 21730462 C T DNAH11 Nonsense_Mutation p.R2009* 0.21 TCGA-AA-A00N-01 7 21946229 21946229 G A CDCA7L Missense_Mutation p.S237L 0.23 deleterious(0) possibly_damaging(0.477) TCGA-AA-A00N-01 7 22259567 22259567 C T RAPGEF5 Missense_Mutation p.R152Q 0.17 deleterious(0.03) benign(0.378) TCGA-AA-A00N-01 7 22769406 22769406 G A IL6 Intron 0.18 TCGA-AA-A00N-01 7 23205532 23205532 T G KLHL7 Missense_Mutation p.I384M 0.19 tolerated(0.13) possibly_damaging(0.854) TCGA-AA-A00N-01 7 23213673 23213673 A G KLHL7 Missense_Mutation p.N506S 0.19 tolerated(0.08) benign(0.03) TCGA-AA-A00N-01 7 23562022 23562022 A C TRA2A Intron 0.23 TCGA-AA-A00N-01 7 26412202 26412202 C A SNX10 3'UTR 0.19 TCGA-AA-A00N-01 7 26766622 26766622 T C SKAP2 Missense_Mutation p.K158R 0.14 deleterious(0.01) possibly_damaging(0.676) TCGA-AA-A00N-01 7 27181553 27181553 T C HOXA5 Silent p.Q238Q 0.18 TCGA-AA-A00N-01 7 27187047 27187047 C T HOXA6 Missense_Mutation p.E108K 0.29 tolerated(0.17) benign(0.018) TCGA-AA-A00N-01 7 29690871 29690871 T C ZNRF2P2 RNA 0.35 TCGA-AA-A00N-01 7 30090063 30090063 T G PLEKHA8 Missense_Mutation p.I204S 0.07 tolerated(0.49) benign(0.007) TCGA-AA-A00N-01 7 3186817 3186817 C T AC091801.1 Intron 0.08 TCGA-AA-A00N-01 7 32109918 32109918 G A PDE1C Intron 0.17 TCGA-AA-A00N-01 7 32209525 32209525 C T PDE1C Silent p.G60G 0.23 TCGA-AA-A00N-01 7 33039783 33039783 G A FKBP9 Missense_Mutation p.G428E 0.22 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 7 34125566 34125566 G A BMPER Missense_Mutation p.R536K 0.25 tolerated(0.21) benign(0.08) TCGA-AA-A00N-01 7 34989478 34989478 G T DPY19L1 Missense_Mutation p.F378L 0.18 tolerated(0.09) benign(0.162) TCGA-AA-A00N-01 7 34994375 34994375 A G DPY19L1 Missense_Mutation p.F346L 0.23 tolerated(0.67) benign(0.002) TCGA-AA-A00N-01 7 35053187 35053187 T C DPY19L1 Missense_Mutation p.Y108C 0.08 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 7 35130023 35130023 G A DPY19L2P1 RNA 0.26 TCGA-AA-A00N-01 7 35289608 35289608 T G TBX20 Missense_Mutation p.K112T 0.28 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 7 36455451 36455451 G A ANLN Missense_Mutation p.E494K 0.07 tolerated(0.42) benign(0.235) TCGA-AA-A00N-01 7 36461478 36461478 G A ANLN Missense_Mutation p.E726K 0.15 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 7 3658775 3658775 G A SDK1 Missense_Mutation p.R121H 0.27 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 7 3678692 3678692 G A SDK1 Missense_Mutation p.R172Q 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-AA-A00N-01 7 37989981 37989981 G A EPDR1 Missense_Mutation p.E220K 0.20 tolerated(0.07) benign(0.003) TCGA-AA-A00N-01 7 38433619 38433619 C A AMPH Missense_Mutation p.A532S 0.18 tolerated(0.12) benign(0.06) TCGA-AA-A00N-01 7 38502589 38502589 G A AMPH Missense_Mutation p.R292W 0.14 deleterious(0) probably_damaging(0.92) TCGA-AA-A00N-01 7 38725479 38725479 G A FAM183B Missense_Mutation p.R43C 0.19 tolerated(0.14) benign(0.016) TCGA-AA-A00N-01 7 38798012 38798012 G A VPS41 Missense_Mutation p.R498W 0.13 tolerated(0.19) benign(0.28) TCGA-AA-A00N-01 7 41729808 41729808 G A INHBA Missense_Mutation p.R241W 0.20 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 7 42063091 42063091 G A GLI3 Silent p.F491F 0.16 TCGA-AA-A00N-01 7 42950417 42950417 C A C7orf25 Missense_Mutation p.R86I 0.28 deleterious_low_confidence(0.02) benign(0.055) TCGA-AA-A00N-01 7 43484421 43484421 C T HECW1 Silent p.C550C 0.24 TCGA-AA-A00N-01 7 43519324 43519324 G A HECW1 Missense_Mutation p.R1072Q 0.34 deleterious(0.01) probably_damaging(0.98) TCGA-AA-A00N-01 7 44027452 44027452 C T POLR2J4 RNA 0.05 TCGA-AA-A00N-01 7 44180602 44180602 G T MYL7 Silent p.V25V 0.26 TCGA-AA-A00N-01 7 45113108 45113108 A G CCM2 Missense_Mutation p.T306A 0.09 tolerated(0.7) benign(0.005) TCGA-AA-A00N-01 7 45124227 45124227 C A NACAD Nonsense_Mutation p.E518* 0.15 TCGA-AA-A00N-01 7 45632459 45632459 G A ADCY1 Silent p.R247R 0.18 TCGA-AA-A00N-01 7 47454705 47454705 G A TNS3 Silent p.F191F 0.22 TCGA-AA-A00N-01 7 47832289 47832289 T C PKD1L1 Missense_Mutation p.N2821S 0.14 tolerated(0.95) benign(0) TCGA-AA-A00N-01 7 47859234 47859234 C T C7orf69 3'UTR 0.21 TCGA-AA-A00N-01 7 48068419 48068419 C T SUN3 Silent p.A39A 0.24 TCGA-AA-A00N-01 7 48139302 48139303 - A UPP1 Frame_Shift_Ins p.M29Nfs*14 0.15 TCGA-AA-A00N-01 7 48146627 48146627 C T UPP1 Silent p.S198S 0.15 TCGA-AA-A00N-01 7 4874860 4874860 A G RADIL Missense_Mutation p.V265A 0.19 deleterious(0) possibly_damaging(0.828) TCGA-AA-A00N-01 7 4901057 4901057 C T PAPOLB Missense_Mutation p.D128N 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 7 4901237 4901237 A C PAPOLB Missense_Mutation p.L68V 0.25 tolerated(0.1) probably_damaging(0.998) TCGA-AA-A00N-01 7 50180931 50180931 C T C7orf72 Silent p.I344I 0.34 TCGA-AA-A00N-01 7 50198757 50198757 G T C7orf72 Missense_Mutation p.D437Y 0.21 tolerated_low_confidence(0.08) possibly_damaging(0.466) TCGA-AA-A00N-01 7 5097343 5097343 C A RBAK-RBAKDN Silent p.I57I 0.06 TCGA-AA-A00N-01 7 5103382 5103382 T G RBAK-RBAKDN Intron 0.10 TCGA-AA-A00N-01 7 53104173 53104173 C T POM121L12 Missense_Mutation p.A270V 0.28 tolerated_low_confidence(0.07) possibly_damaging(0.873) TCGA-AA-A00N-01 7 540103 540103 C A PDGFA Missense_Mutation p.R205I 0.23 deleterious(0.01) benign(0.231) TCGA-AA-A00N-01 7 5427852 5427852 C T TNRC18 Missense_Mutation p.A535T 0.37 benign(0.187) TCGA-AA-A00N-01 7 55223559 55223559 G A EGFR Missense_Mutation p.R309Q 0.18 tolerated(0.09) probably_damaging(0.999) TCGA-AA-A00N-01 7 55224588 55224588 C T EGFR Intron 0.20 TCGA-AA-A00N-01 7 55236288 55236288 C A EGFR Intron 0.23 TCGA-AA-A00N-01 7 57188167 57188167 G T ZNF479 Missense_Mutation p.H319N 0.14 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 7 5920531 5920531 C T OCM Missense_Mutation p.T4M 0.27 deleterious(0) possibly_damaging(0.858) TCGA-AA-A00N-01 7 5967840 5967840 C T RSPH10B Missense_Mutation p.E807K 0.12 deleterious(0.02) benign(0.099) TCGA-AA-A00N-01 7 6022502 6022502 G A PMS2 Silent p.F709F 0.28 TCGA-AA-A00N-01 7 6370105 6370105 G T FAM220A Missense_Mutation p.F227L 0.25 tolerated(0.1) benign(0.373) TCGA-AA-A00N-01 7 6370624 6370624 T C FAM220A Silent p.G54G 0.15 TCGA-AA-A00N-01 7 64168463 64168463 A G ZNF107 Missense_Mutation p.N594S 0.24 tolerated(1) benign(0.026) TCGA-AA-A00N-01 7 64168767 64168767 A G ZNF107 Silent p.E695E 0.18 TCGA-AA-A00N-01 7 64292367 64292367 A G ZNF138 Silent p.K223K 0.13 TCGA-AA-A00N-01 7 64388086 64388086 C A ZNF273 Missense_Mutation p.S127Y 0.24 deleterious(0.04) probably_damaging(0.986) TCGA-AA-A00N-01 7 64639675 64639675 C T INTS4L1 RNA 0.08 TCGA-AA-A00N-01 7 64670164 64670164 T G INTS4L1 RNA 0.17 TCGA-AA-A00N-01 7 6537698 6537698 G A GRID2IP Silent p.F1187F 0.24 TCGA-AA-A00N-01 7 66479550 66479550 T C TYW1 Splice_Site p.X190_splice 0.05 TCGA-AA-A00N-01 7 66548522 66548522 T C TYW1 Silent p.F460F 0.30 TCGA-AA-A00N-01 7 6836405 6836405 A G RSPH10B2 Intron 0.09 TCGA-AA-A00N-01 7 70227972 70227972 G T AUTS2 Nonsense_Mutation p.E287* 0.29 TCGA-AA-A00N-01 7 72159691 72159691 C T MIR4650-2 5'Flank 0.13 TCGA-AA-A00N-01 7 72734153 72734153 C T TRIM50 Missense_Mutation p.R163Q 0.04 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A00N-01 7 72755320 72755320 C T FKBP6 Nonsense_Mutation p.R278* 0.20 TCGA-AA-A00N-01 7 72857129 72857129 C T BAZ1B Silent p.R1340R 0.32 TCGA-AA-A00N-01 7 72903573 72903573 T G BAZ1B Missense_Mutation p.K281T 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 7 72907227 72907227 C T BAZ1B Missense_Mutation p.R199Q 0.19 deleterious(0.01) probably_damaging(0.929) TCGA-AA-A00N-01 7 73477508 73477508 A G ELN Silent p.G604G 0.17 TCGA-AA-A00N-01 7 75140285 75140285 G A Y_RNA 3'Flank 0.15 TCGA-AA-A00N-01 7 75186992 75186992 G A HIP1 Missense_Mutation p.S516L 0.31 deleterious(0.04) benign(0.011) TCGA-AA-A00N-01 7 75189191 75189191 C T HIP1 Missense_Mutation p.G407D 0.24 tolerated(0.11) benign(0.054) TCGA-AA-A00N-01 7 75695797 75695797 T C MDH2 3'UTR 0.22 TCGA-AA-A00N-01 7 76825644 76825644 G T FGL2 Silent p.S424S 0.19 TCGA-AA-A00N-01 7 76889410 76889410 T C CCDC146 Silent p.S281S 0.17 TCGA-AA-A00N-01 7 76889461 76889461 A C CCDC146 Silent p.R298R 0.17 TCGA-AA-A00N-01 7 76940604 76940604 G A GSAP 3'UTR 0.22 TCGA-AA-A00N-01 7 76991952 76991952 C T GSAP Silent p.P299P 0.06 TCGA-AA-A00N-01 7 77010631 77010631 T C GSAP Silent p.G189G 0.22 TCGA-AA-A00N-01 7 77265144 77265144 G T PTPN12 Missense_Mutation p.R707L 0.17 tolerated_low_confidence(0.55) benign(0) TCGA-AA-A00N-01 7 77268548 77268548 G A PTPN12 Missense_Mutation p.R765Q 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A00N-01 7 77973134 77973134 G A MAGI2 Missense_Mutation p.P457S 0.25 tolerated(0.34) probably_damaging(0.999) TCGA-AA-A00N-01 7 80546100 80546100 C A SEMA3C 5'UTR 0.19 TCGA-AA-A00N-01 7 81589142 81589142 G T CACNA2D1 Silent p.I990I 0.16 TCGA-AA-A00N-01 7 82389990 82389990 G A PCLO Nonsense_Mutation p.R5085* 0.17 TCGA-AA-A00N-01 7 82580704 82580704 C A PCLO Missense_Mutation p.R3067I 0.17 unknown(0) TCGA-AA-A00N-01 7 82595553 82595553 T G PCLO Missense_Mutation p.K1184T 0.19 unknown(0) TCGA-AA-A00N-01 7 82763624 82763624 T G PCLO Missense_Mutation p.E1081A 0.26 unknown(0) TCGA-AA-A00N-01 7 83025989 83025989 C A SEMA3E Nonsense_Mutation p.E475* 0.12 TCGA-AA-A00N-01 7 83764117 83764117 A C SEMA3A Missense_Mutation p.F88C 0.15 tolerated(0.17) possibly_damaging(0.581) TCGA-AA-A00N-01 7 83823854 83823854 T C SEMA3A Missense_Mutation p.T17A 0.29 tolerated(0.6) benign(0) TCGA-AA-A00N-01 7 84642104 84642104 C T SEMA3D Missense_Mutation p.E588K 0.19 tolerated(0.34) benign(0.017) TCGA-AA-A00N-01 7 86544165 86544165 T G KIAA1324L Missense_Mutation p.R535S 0.10 tolerated(1) benign(0.025) TCGA-AA-A00N-01 7 86571380 86571380 T C KIAA1324L Missense_Mutation p.D232G 0.14 tolerated(0.1) benign(0.393) TCGA-AA-A00N-01 7 86986903 86986903 C T CROT Nonsense_Mutation p.Q66* 0.23 TCGA-AA-A00N-01 7 87214992 87214992 C T ABCB1 Missense_Mutation p.R41H 0.11 deleterious(0.01) probably_damaging(0.949) TCGA-AA-A00N-01 7 87225109 87225109 C A ABCB1 Missense_Mutation p.K30N 0.23 tolerated(0.12) possibly_damaging(0.467) TCGA-AA-A00N-01 7 87407141 87407141 C T RUNDC3B Nonsense_Mutation p.R293* 0.19 TCGA-AA-A00N-01 7 87436810 87436810 G A RUNDC3B Missense_Mutation p.R377Q 0.29 tolerated(0.12) possibly_damaging(0.791) TCGA-AA-A00N-01 7 87479241 87479241 C T SLC25A40 Missense_Mutation p.R96Q 0.22 tolerated(0.16) benign(0.328) TCGA-AA-A00N-01 7 87762257 87762257 C T ADAM22 Silent p.G356G 0.28 TCGA-AA-A00N-01 7 87765309 87765309 G A ADAM22 Missense_Mutation p.E395K 0.16 tolerated(0.54) benign(0.008) TCGA-AA-A00N-01 7 8790737 8790737 G A NXPH1 Missense_Mutation p.D52N 0.19 tolerated(0.47) benign(0.051) TCGA-AA-A00N-01 7 892253 892253 C T SUN1 Nonsense_Mutation p.R287* 0.20 TCGA-AA-A00N-01 7 897581 897581 C T SUN1 Missense_Mutation p.A504V 0.21 tolerated(0.3) benign(0.001) TCGA-AA-A00N-01 7 89969813 89969813 G A GTPBP10 5'UTR 0.26 TCGA-AA-A00N-01 7 899821 899821 C T SUN1 Silent p.G527G 0.33 TCGA-AA-A00N-01 7 90042044 90042044 C T CLDN12 Silent p.I18I 0.17 TCGA-AA-A00N-01 7 90044611 90044611 A C CLDN12 3'UTR 0.17 TCGA-AA-A00N-01 7 90895350 90895350 C T FZD1 Silent p.F385F 0.22 TCGA-AA-A00N-01 7 90896179 90896179 G A FZD1 3'UTR 0.11 TCGA-AA-A00N-01 7 90897953 90897953 T G FZD1 3'UTR 0.18 TCGA-AA-A00N-01 7 91630312 91630312 G T AKAP9 Nonsense_Mutation p.E361* 0.16 TCGA-AA-A00N-01 7 91641773 91641773 C T AKAP9 Missense_Mutation p.R1117C 0.25 probably_damaging(0.999) TCGA-AA-A00N-01 7 91726522 91726522 C T AKAP9 Missense_Mutation p.R3417C 0.29 possibly_damaging(0.901) TCGA-AA-A00N-01 7 91736613 91736613 A G AKAP9 Missense_Mutation p.E3808G 0.11 benign(0.318) TCGA-AA-A00N-01 7 91793136 91793136 T G LRRD1 Missense_Mutation p.K461Q 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-AA-A00N-01 7 91794540 91794540 C T LRRD1 5'UTR 0.29 TCGA-AA-A00N-01 7 92028306 92028306 G C ANKIB1 3'UTR 0.28 TCGA-AA-A00N-01 7 92130988 92130988 C T PEX1 Splice_Site p.X806_splice 0.14 TCGA-AA-A00N-01 7 92158204 92158204 A C RBM48 Missense_Mutation p.K26T 0.28 deleterious(0.02) benign(0.08) TCGA-AA-A00N-01 7 92734353 92734353 G A SAMD9 Missense_Mutation p.T353M 0.30 tolerated(0.33) benign(0.002) TCGA-AA-A00N-01 7 92734394 92734394 G A SAMD9 Silent p.F339F 0.21 TCGA-AA-A00N-01 7 92761054 92761054 G A SAMD9L Nonsense_Mutation p.R1411* 0.08 TCGA-AA-A00N-01 7 92985364 92985364 A G CCDC132 Missense_Mutation p.D916G 0.09 tolerated(0.07) benign(0.288) TCGA-AA-A00N-01 7 93055899 93055899 G T CALCR Silent p.V432V 0.15 TCGA-AA-A00N-01 7 94040207 94040207 C T COL1A2 Missense_Mutation p.P402S 0.08 probably_damaging(0.992) TCGA-AA-A00N-01 7 94285390 94285390 C A SGCE Missense_Mutation p.W7C 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A00N-01 7 94294521 94294521 G A PEG10 3'UTR 0.28 TCGA-AA-A00N-01 7 94295120 94295120 A C PEG10 3'UTR 0.24 TCGA-AA-A00N-01 7 94296616 94296616 C G PEG10 3'UTR 0.17 TCGA-AA-A00N-01 7 95001561 95001561 T C PON3 Silent p.A97A 0.17 TCGA-AA-A00N-01 7 95214967 95214967 C A PDK4 Nonsense_Mutation p.E408* 0.21 TCGA-AA-A00N-01 7 95221314 95221314 A C PDK4 Missense_Mutation p.L227R 0.06 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 7 95442584 95442584 G A DYNC1I1 Silent p.S100S 0.45 TCGA-AA-A00N-01 7 95665014 95665014 C T DYNC1I1 Silent p.F455F 0.10 TCGA-AA-A00N-01 7 95813723 95813723 G T SLC25A13 Missense_Mutation p.P349H 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 7 96324147 96324147 C T SHFM1 Missense_Mutation p.D45N 0.20 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 7 97816231 97816231 C T LMTK2 Nonsense_Mutation p.R307* 0.29 TCGA-AA-A00N-01 7 97821315 97821315 C T LMTK2 Missense_Mutation p.S513L 0.26 tolerated(0.08) possibly_damaging(0.449) TCGA-AA-A00N-01 7 98254472 98254472 C T NPTX2 Silent p.N294N 0.23 TCGA-AA-A00N-01 7 98545951 98545951 G A TRRAP Silent p.A1545A 0.08 TCGA-AA-A00N-01 7 98551048 98551048 G A TRRAP Missense_Mutation p.V1901I 0.18 possibly_damaging(0.84) TCGA-AA-A00N-01 7 98565269 98565269 C T TRRAP Missense_Mutation p.S2480L 0.16 benign(0.206) TCGA-AA-A00N-01 7 98775569 98775569 T G KPNA7 Missense_Mutation p.N480H 0.26 tolerated(0.11) benign(0.001) TCGA-AA-A00N-01 7 98793761 98793761 T G KPNA7 Missense_Mutation p.K77T 0.11 tolerated(0.16) benign(0.14) TCGA-AA-A00N-01 7 98942038 98942038 G A ARPC1A Missense_Mutation p.A98T 0.16 deleterious(0) possibly_damaging(0.611) TCGA-AA-A00N-01 7 99051617 99051617 C T CPSF4 Missense_Mutation p.S200L 0.25 tolerated(0.36) benign(0.004) TCGA-AA-A00N-01 7 99084495 99084495 G T ZNF789 Missense_Mutation p.R221I 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-AA-A00N-01 7 99084677 99084677 G T ZNF789 Nonsense_Mutation p.E282* 0.17 TCGA-AA-A00N-01 7 99084990 99084990 G A ZNF789 Missense_Mutation p.R386Q 0.24 tolerated(0.23) benign(0.389) TCGA-AA-A00N-01 7 99092044 99092044 T C ZNF394 Missense_Mutation p.N265S 0.19 tolerated(0.44) benign(0.003) TCGA-AA-A00N-01 7 99092065 99092065 G T ZNF394 Missense_Mutation p.S258Y 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A00N-01 7 99359808 99359808 G A CYP3A4 Missense_Mutation p.A370V 0.15 tolerated(0.17) benign(0.01) TCGA-AA-A00N-01 7 99526680 99526680 C T GJC3 Silent p.K188K 0.17 TCGA-AA-A00N-01 7 99708918 99708918 C A TAF6 Missense_Mutation p.M346I 0.18 tolerated(0.79) benign(0.091) TCGA-AA-A00N-01 7 99798385 99798385 T G STAG3 Intron 0.17 TCGA-AA-A00N-01 7 99950697 99950697 C A PILRB 5'UTR 0.26 TCGA-AA-A00N-01 8 100147929 100147929 G A VPS13B Missense_Mutation p.A511T 0.15 tolerated(0.1) possibly_damaging(0.821) TCGA-AA-A00N-01 8 100831751 100831751 C A VPS13B Missense_Mutation p.F2936L 0.18 tolerated(0.06) benign(0.153) TCGA-AA-A00N-01 8 100833667 100833667 T C VPS13B Missense_Mutation p.V3072A 0.21 deleterious(0) benign(0.002) TCGA-AA-A00N-01 8 101014537 101014537 C A RGS22 Missense_Mutation p.D895Y 0.17 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 8 101016271 101016271 C T RGS22 Missense_Mutation p.R837Q 0.30 tolerated(0.46) benign(0.001) TCGA-AA-A00N-01 8 101153421 101153421 G T FBXO43 Missense_Mutation p.S354Y 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 101154208 101154208 C A FBXO43 Nonsense_Mutation p.E92* 0.16 TCGA-AA-A00N-01 8 101541861 101541861 G A ANKRD46 Silent p.F67F 0.14 TCGA-AA-A00N-01 8 102381457 102381457 A C NACAP1 RNA 0.22 TCGA-AA-A00N-01 8 102701564 102701564 G A NCALD Silent p.C185C 0.22 TCGA-AA-A00N-01 8 103663484 103663484 G A KLF10 Missense_Mutation p.P359L 0.22 tolerated(0.16) benign(0.053) TCGA-AA-A00N-01 8 104225186 104225186 G A BAALC Missense_Mutation p.R67Q 0.21 tolerated(0.25) probably_damaging(0.976) TCGA-AA-A00N-01 8 104240312 104240312 G T BAALC Missense_Mutation p.K141N 0.14 deleterious(0.03) benign(0.039) TCGA-AA-A00N-01 8 104342232 104342232 G A FZD6 Missense_Mutation p.E631K 0.18 tolerated_low_confidence(0.15) benign(0.11) TCGA-AA-A00N-01 8 104388186 104388186 C T CTHRC1 Missense_Mutation p.A124V 0.12 tolerated(0.61) benign(0.057) TCGA-AA-A00N-01 8 104394814 104394814 G T CTHRC1 Nonsense_Mutation p.E240* 0.27 TCGA-AA-A00N-01 8 10468852 10468852 G A RP1L1 Missense_Mutation p.S919F 0.38 possibly_damaging(0.54) TCGA-AA-A00N-01 8 10469969 10469969 C T RP1L1 Missense_Mutation p.E547K 0.24 benign(0.142) TCGA-AA-A00N-01 8 10470176 10470176 C A RP1L1 Missense_Mutation p.D478Y 0.23 probably_damaging(0.95) TCGA-AA-A00N-01 8 104987596 104987596 G A RIMS2 Missense_Mutation p.R930Q 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A00N-01 8 105405200 105405200 G T DPYS Missense_Mutation p.H419N 0.18 deleterious(0.02) probably_damaging(0.956) TCGA-AA-A00N-01 8 105459583 105459583 A G DPYS Missense_Mutation p.V191A 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 105502936 105502936 C T LRP12 Missense_Mutation p.E849K 0.33 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-AA-A00N-01 8 10555444 10555444 C T C8orf74 Missense_Mutation p.R193W 0.20 deleterious(0) possibly_damaging(0.599) TCGA-AA-A00N-01 8 10583419 10583419 G A SOX7 Silent p.F384F 0.43 TCGA-AA-A00N-01 8 10756221 10756221 G A XKR6 Silent p.F389F 0.14 TCGA-AA-A00N-01 8 107719114 107719114 G T OXR1 Missense_Mutation p.E456D 0.24 tolerated(0.42) benign(0.003) TCGA-AA-A00N-01 8 107722932 107722932 G A OXR1 Silent p.T570T 0.22 TCGA-AA-A00N-01 8 109796543 109796543 C T TMEM74 Missense_Mutation p.R262Q 0.29 deleterious(0.04) benign(0.066) TCGA-AA-A00N-01 8 110100147 110100147 C A TRHR Missense_Mutation p.L136I 0.18 tolerated(0.31) benign(0.011) TCGA-AA-A00N-01 8 110100274 110100274 C T TRHR Missense_Mutation p.S178F 0.23 deleterious(0.03) possibly_damaging(0.657) TCGA-AA-A00N-01 8 110308765 110308765 G A NUDCD1 Nonsense_Mutation p.R103* 0.31 TCGA-AA-A00N-01 8 110355794 110355794 T G ENY2 3'UTR 0.12 TCGA-AA-A00N-01 8 110452953 110452953 C A PKHD1L1 Missense_Mutation p.S1324Y 0.23 deleterious(0.04) possibly_damaging(0.447) TCGA-AA-A00N-01 8 110457666 110457666 C A PKHD1L1 Missense_Mutation p.F1856L 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 110510984 110510984 C T PKHD1L1 Silent p.G3604G 0.09 TCGA-AA-A00N-01 8 110563072 110563072 C T EBAG9 Missense_Mutation p.R7W 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A00N-01 8 110567089 110567089 G T EBAG9 Missense_Mutation p.M98I 0.14 deleterious(0.01) possibly_damaging(0.813) TCGA-AA-A00N-01 8 110576705 110576705 G A EBAG9 Missense_Mutation p.E187K 0.25 deleterious(0) possibly_damaging(0.866) TCGA-AA-A00N-01 8 113668385 113668385 T G CSMD3 Missense_Mutation p.E1001A 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 8 116426223 116426223 C T TRPS1 3'UTR 0.20 TCGA-AA-A00N-01 8 116427138 116427138 G T TRPS1 Missense_Mutation p.H1000N 0.19 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-AA-A00N-01 8 116599306 116599306 C A TRPS1 Missense_Mutation p.E874D 0.21 deleterious_low_confidence(0) benign(0.133) TCGA-AA-A00N-01 8 117864206 117864206 T C RAD21 Missense_Mutation p.D484G 0.29 tolerated(0.12) benign(0.014) TCGA-AA-A00N-01 8 117864929 117864929 T C RAD21 Missense_Mutation p.T394A 0.21 tolerated(0.13) benign(0.025) TCGA-AA-A00N-01 8 118165195 118165195 C T SLC30A8 Missense_Mutation p.A95V 0.26 deleterious(0) possibly_damaging(0.864) TCGA-AA-A00N-01 8 118819496 118819496 C T EXT1 Missense_Mutation p.D615N 0.17 deleterious(0.01) possibly_damaging(0.825) TCGA-AA-A00N-01 8 119593078 119593078 C A SAMD12 Missense_Mutation p.G23V 0.21 deleterious(0) possibly_damaging(0.784) TCGA-AA-A00N-01 8 119945348 119945348 C T TNFRSF11B Nonsense_Mutation p.W74* 0.16 TCGA-AA-A00N-01 8 121259951 121259951 G A COL14A1 Missense_Mutation p.R860K 0.08 tolerated(0.69) possibly_damaging(0.588) TCGA-AA-A00N-01 8 121528368 121528368 G A MTBP Missense_Mutation p.R728Q 0.36 tolerated(0.2) benign(0.001) TCGA-AA-A00N-01 8 121551124 121551124 A G SNTB1 Missense_Mutation p.V537A 0.29 deleterious(0) benign(0.358) TCGA-AA-A00N-01 8 122626750 122626750 T G HAS2 Missense_Mutation p.K420Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 8 122626853 122626853 G T HAS2 Missense_Mutation p.F385L 0.07 tolerated(1) benign(0.123) TCGA-AA-A00N-01 8 124096454 124096454 G A TBC1D31 Silent p.S131S 0.27 TCGA-AA-A00N-01 8 124340490 124340490 A G ATAD2 Missense_Mutation p.C1270R 0.19 tolerated(0.51) benign(0.051) TCGA-AA-A00N-01 8 124383478 124383478 C A ATAD2 Nonsense_Mutation p.E213* 0.25 TCGA-AA-A00N-01 8 124664009 124664009 G T KLHL38 Missense_Mutation p.F386L 0.28 deleterious(0.03) benign(0.208) TCGA-AA-A00N-01 8 124968280 124968280 G T FER1L6 Missense_Mutation p.E14D 0.18 tolerated_low_confidence(0.65) benign(0.002) TCGA-AA-A00N-01 8 124978467 124978467 G A FER1L6 Silent p.E107E 0.26 TCGA-AA-A00N-01 8 125094625 125094625 G T FER1L6 Missense_Mutation p.E1439D 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 8 125131163 125131163 C T FER1L6 Missense_Mutation p.P1790S 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A00N-01 8 125464052 125464052 G T TRMT12 Missense_Mutation p.R295I 0.32 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 8 126095367 126095367 A G KIAA0196 Missense_Mutation p.V107A 0.11 tolerated(0.5) benign(0.077) TCGA-AA-A00N-01 8 12881854 12881854 T C KIAA1456 3'UTR 0.14 TCGA-AA-A00N-01 8 12882302 12882302 A C KIAA1456 3'UTR 0.18 TCGA-AA-A00N-01 8 12885948 12885948 A G KIAA1456 3'UTR 0.18 TCGA-AA-A00N-01 8 12946054 12946054 A C DLC1 Missense_Mutation p.Y1412D 0.07 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 130764119 130764119 A G GSDMC Missense_Mutation p.I302T 0.07 tolerated(0.06) benign(0.056) TCGA-AA-A00N-01 8 130789763 130789763 A G GSDMC Missense_Mutation p.V24A 0.32 tolerated(0.05) possibly_damaging(0.811) TCGA-AA-A00N-01 8 130874494 130874494 G A FAM49B Silent p.Y94Y 0.20 TCGA-AA-A00N-01 8 131414152 131414152 G A ASAP1 Missense_Mutation p.S13L 0.25 tolerated_low_confidence(0.17) unknown(0) TCGA-AA-A00N-01 8 131792892 131792892 G A ADCY8 Missense_Mutation p.T1167M 0.19 deleterious(0) benign(0.027) TCGA-AA-A00N-01 8 131812671 131812671 C T ADCY8 Splice_Site p.X1020_splice 0.18 TCGA-AA-A00N-01 8 131812678 131812678 G A ADCY8 Silent p.F1018F 0.44 TCGA-AA-A00N-01 8 131916094 131916094 C A ADCY8 Missense_Mutation p.R612I 0.32 tolerated(0.05) possibly_damaging(0.896) TCGA-AA-A00N-01 8 131921974 131921974 G A ADCY8 Silent p.L540L 0.25 TCGA-AA-A00N-01 8 132957062 132957062 G A EFR3A Missense_Mutation p.R53Q 0.26 deleterious(0) probably_damaging(0.985) TCGA-AA-A00N-01 8 133049715 133049715 C A OC90 Missense_Mutation p.D217Y 0.15 deleterious(0) probably_damaging(0.928) TCGA-AA-A00N-01 8 133076208 133076208 G T OC90 5'Flank 0.24 TCGA-AA-A00N-01 8 13357043 13357043 C T DLC1 Missense_Mutation p.E180K 0.23 tolerated_low_confidence(0.17) benign(0.002) TCGA-AA-A00N-01 8 133826884 133826884 G A PHF20L1 Silent p.A311A 0.15 TCGA-AA-A00N-01 8 133898917 133898917 T G TG Missense_Mutation p.S434A 0.15 tolerated(0.33) benign(0.003) TCGA-AA-A00N-01 8 133899044 133899044 T G TG Missense_Mutation p.F476C 0.22 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 8 133911111 133911111 G T TG Nonsense_Mutation p.E1096* 0.13 TCGA-AA-A00N-01 8 133912520 133912520 C A TG Silent p.G1123G 0.19 TCGA-AA-A00N-01 8 134108557 134108557 C T TG Silent p.V2504V 0.16 TCGA-AA-A00N-01 8 13425717 13425717 G T C8orf48 3'UTR 0.18 TCGA-AA-A00N-01 8 139380195 139380195 G A FAM135B Missense_Mutation p.S11L 0.26 deleterious(0) benign(0.075) TCGA-AA-A00N-01 8 139380222 139380222 G T FAM135B Missense_Mutation p.S2Y 0.24 deleterious(0) possibly_damaging(0.646) TCGA-AA-A00N-01 8 139601538 139601538 G A COL22A1 Silent p.F1613F 0.26 TCGA-AA-A00N-01 8 141542049 141542049 C T AGO2 3'UTR 0.29 TCGA-AA-A00N-01 8 141874482 141874482 G A PTK2 Missense_Mutation p.R127C 0.06 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 8 142151526 142151526 C A DENND3 Intron 0.26 TCGA-AA-A00N-01 8 143922641 143922641 C T GML Missense_Mutation p.R61C 0.23 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 8 143928152 143928152 G T GML 3'UTR 0.18 TCGA-AA-A00N-01 8 143999244 143999244 C A CYP11B2 Missense_Mutation p.A5S 0.08 tolerated(0.18) benign(0.022) TCGA-AA-A00N-01 8 144378107 144378107 C T ZNF696 Nonsense_Mutation p.R88* 0.37 TCGA-AA-A00N-01 8 144621258 144621258 C A ZC3H3 Silent p.R93R 0.22 TCGA-AA-A00N-01 8 144652699 144652699 G A MROH6 Silent p.P283P 0.19 TCGA-AA-A00N-01 8 144732417 144732417 C T ZNF623 Silent p.C125C 0.15 TCGA-AA-A00N-01 8 144732601 144732601 G T ZNF623 Missense_Mutation p.D187Y 0.22 deleterious(0.01) possibly_damaging(0.843) TCGA-AA-A00N-01 8 144733336 144733336 G A ZNF623 Missense_Mutation p.E432K 0.28 tolerated(0.25) benign(0.253) TCGA-AA-A00N-01 8 144943147 144943147 G A EPPK1 Silent p.S1425S 0.33 TCGA-AA-A00N-01 8 144995174 144995174 G A PLEC Missense_Mutation p.R3076W 0.21 probably_damaging(0.991) TCGA-AA-A00N-01 8 145002135 145002135 G A PLEC Missense_Mutation p.R1233C 0.17 unknown(0) TCGA-AA-A00N-01 8 145059487 145059487 C T PARP10 Missense_Mutation p.R228Q 0.16 tolerated(0.06) possibly_damaging(0.799) TCGA-AA-A00N-01 8 145582903 145582903 G T SLC52A2 5'UTR 0.22 TCGA-AA-A00N-01 8 146067469 146067469 G T ZNF7 Missense_Mutation p.R326I 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-AA-A00N-01 8 146157255 146157255 C T ZNF16 Silent p.S306S 0.27 TCGA-AA-A00N-01 8 146157691 146157691 C T ZNF16 Missense_Mutation p.R161H 0.32 tolerated(0.13) benign(0.004) TCGA-AA-A00N-01 8 1626396 1626396 C T DLGAP2 Missense_Mutation p.R689C 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 1626488 1626488 C T DLGAP2 Silent p.F719F 0.07 TCGA-AA-A00N-01 8 16935352 16935352 C T MICU3 Nonsense_Mutation p.R210* 0.26 TCGA-AA-A00N-01 8 17102580 17102580 G A CNOT7 Missense_Mutation p.R28C 0.16 deleterious(0) benign(0.302) TCGA-AA-A00N-01 8 17102630 17102630 C A CNOT7 Missense_Mutation p.R11I 0.08 tolerated(0.06) benign(0.001) TCGA-AA-A00N-01 8 17188750 17188750 C A MTMR7 Missense_Mutation p.E258D 0.19 deleterious(0) probably_damaging(0.989) TCGA-AA-A00N-01 8 17409495 17409495 G A SLC7A2 Missense_Mutation p.S392N 0.30 deleterious(0) probably_damaging(0.984) TCGA-AA-A00N-01 8 18080076 18080076 G T NAT1 Nonsense_Mutation p.E236* 0.08 TCGA-AA-A00N-01 8 1842570 1842570 G A ARHGEF10 Silent p.K424K 0.17 TCGA-AA-A00N-01 8 1905570 1905570 C T ARHGEF10 3'UTR 0.33 TCGA-AA-A00N-01 8 19218760 19218760 T C SH2D4A Missense_Mutation p.I214T 0.21 tolerated(0.86) benign(0.001) TCGA-AA-A00N-01 8 1951622 1951622 G A KBTBD11 3'UTR 0.15 TCGA-AA-A00N-01 8 19809337 19809337 G T LPL Nonsense_Mutation p.E103* 0.28 TCGA-AA-A00N-01 8 20007219 20007219 C T SLC18A1 Missense_Mutation p.G372R 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 8 2077163 2077163 G A MYOM2 Missense_Mutation p.R1248Q 0.14 tolerated(0.13) benign(0.39) TCGA-AA-A00N-01 8 21562510 21562510 C A GFRA2 Missense_Mutation p.E344D 0.21 tolerated(0.46) benign(0.208) TCGA-AA-A00N-01 8 21997701 21997701 C T REEP4 Missense_Mutation p.D56N 0.21 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 8 22161626 22161626 G A PIWIL2 Missense_Mutation p.R425H 0.17 tolerated(0.07) benign(0.067) TCGA-AA-A00N-01 8 22429323 22429323 A G SORBS3 Missense_Mutation p.I612M 0.24 deleterious(0.02) possibly_damaging(0.764) TCGA-AA-A00N-01 8 23147914 23147914 G A R3HCC1 Missense_Mutation p.E75K 0.24 tolerated(0.12) benign(0.17) TCGA-AA-A00N-01 8 23191111 23191111 G A LOXL2 Missense_Mutation p.R257C 0.29 tolerated(0.06) possibly_damaging(0.697) TCGA-AA-A00N-01 8 23712142 23712142 A C STC1 5'UTR 0.18 TCGA-AA-A00N-01 8 24177758 24177758 G T ADAM28 Missense_Mutation p.D196Y 0.16 deleterious(0.01) possibly_damaging(0.885) TCGA-AA-A00N-01 8 24181432 24181432 C T ADAM28 Missense_Mutation p.A269V 0.22 deleterious(0.04) possibly_damaging(0.906) TCGA-AA-A00N-01 8 24300024 24300024 C T ADAM7 Missense_Mutation p.R31C 0.19 deleterious(0) possibly_damaging(0.533) TCGA-AA-A00N-01 8 24771870 24771870 C A NEFM Silent p.R188R 0.14 TCGA-AA-A00N-01 8 24813727 24813727 G A CTD-2168K21.2 5'Flank 0.08 TCGA-AA-A00N-01 8 24813869 24813869 C T CTD-2168K21.2 5'Flank 0.06 TCGA-AA-A00N-01 8 25154087 25154087 G A DOCK5 Missense_Mutation p.E177K 0.25 tolerated(0.94) benign(0.001) TCGA-AA-A00N-01 8 25200015 25200015 G A DOCK5 Missense_Mutation p.R870Q 0.19 tolerated(0.58) benign(0.001) TCGA-AA-A00N-01 8 26237078 26237078 C T BNIP3L 5'Flank 0.17 TCGA-AA-A00N-01 8 26237216 26237216 G A BNIP3L 5'Flank 0.19 TCGA-AA-A00N-01 8 26238770 26238770 A G BNIP3L 5'Flank 0.19 TCGA-AA-A00N-01 8 26365118 26365118 G T PNMA2 3'UTR 0.19 TCGA-AA-A00N-01 8 26722229 26722229 G A ADRA1A Silent p.F86F 0.19 TCGA-AA-A00N-01 8 27288758 27288758 T C PTK2B Intron 0.09 TCGA-AA-A00N-01 8 27509049 27509049 G A SCARA3 Missense_Mutation p.R44H 0.19 deleterious(0) probably_damaging(0.971) TCGA-AA-A00N-01 8 27614247 27614247 G A CCDC25 Nonsense_Mutation p.R53* 0.36 TCGA-AA-A00N-01 8 27634658 27634658 G A ESCO2 Missense_Mutation p.S278N 0.30 tolerated(0.3) benign(0.048) TCGA-AA-A00N-01 8 28286209 28286209 G A FBXO16 3'UTR 0.24 TCGA-AA-A00N-01 8 2836281 2836281 G A CSMD1 Missense_Mutation p.R2807C 0.28 probably_damaging(0.999) TCGA-AA-A00N-01 8 28409221 28409221 G T FZD3 Missense_Mutation p.K502N 0.19 deleterious(0.01) benign(0.027) TCGA-AA-A00N-01 8 28574244 28574244 G A EXTL3 Missense_Mutation p.R223Q 0.23 tolerated(0.47) benign(0.075) TCGA-AA-A00N-01 8 28654129 28654129 A C INTS9 Missense_Mutation p.L263R 0.22 deleterious(0) possibly_damaging(0.639) TCGA-AA-A00N-01 8 2886844 2886844 G A CSMD1 Nonsense_Mutation p.R2618* 0.13 TCGA-AA-A00N-01 8 28876382 28876382 G A HMBOX1 Missense_Mutation p.R268Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 8 28974376 28974376 C A KIF13B Missense_Mutation p.R1270I 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 28976451 28976451 C T KIF13B Silent p.A1198A 0.22 TCGA-AA-A00N-01 8 29035084 29035084 C A KIF13B Missense_Mutation p.E244D 0.26 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 8 29197723 29197723 G T DUSP4 Missense_Mutation p.F157L 0.27 tolerated(1) benign(0.003) TCGA-AA-A00N-01 8 2944743 2944743 C T CSMD1 Silent p.A2450A 0.13 TCGA-AA-A00N-01 8 2976049 2976049 G A CSMD1 Missense_Mutation p.S2101L 0.20 benign(0.396) TCGA-AA-A00N-01 8 30610565 30610565 G T UBXN8 RNA 0.05 TCGA-AA-A00N-01 8 30694529 30694529 G A TEX15 Missense_Mutation p.L2708F 0.07 tolerated(0.09) possibly_damaging(0.847) TCGA-AA-A00N-01 8 30699702 30699702 T C TEX15 Missense_Mutation p.I2278V 0.19 tolerated(1) benign(0) TCGA-AA-A00N-01 8 30701585 30701585 G T TEX15 Missense_Mutation p.A1650D 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 8 30702230 30702230 G T TEX15 Missense_Mutation p.S1435Y 0.25 tolerated(0.27) benign(0.032) TCGA-AA-A00N-01 8 30702801 30702801 T G TEX15 Missense_Mutation p.N1245H 0.24 deleterious(0.02) benign(0.002) TCGA-AA-A00N-01 8 30703849 30703849 G T TEX15 Missense_Mutation p.F895L 0.22 tolerated(0.65) benign(0.004) TCGA-AA-A00N-01 8 30705995 30705995 C A TEX15 Missense_Mutation p.R180I 0.14 deleterious(0.01) benign(0.316) TCGA-AA-A00N-01 8 3081268 3081268 G A CSMD1 Silent p.I1489I 0.17 TCGA-AA-A00N-01 8 30989978 30989978 G A WRN Missense_Mutation p.E975K 0.19 deleterious(0.04) benign(0.07) TCGA-AA-A00N-01 8 33406291 33406291 G T RNF122 Missense_Mutation p.L150I 0.15 deleterious_low_confidence(0.02) benign(0.098) TCGA-AA-A00N-01 8 33406360 33406360 G A RNF122 Missense_Mutation p.R127C 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 8 35583732 35583732 G A UNC5D Missense_Mutation p.G456R 0.23 deleterious(0.01) possibly_damaging(0.587) TCGA-AA-A00N-01 8 36691085 36691085 T G KCNU1 Missense_Mutation p.L374V 0.06 deleterious(0.01) benign(0.092) TCGA-AA-A00N-01 8 37695317 37695317 G A GPR124 Missense_Mutation p.E707K 0.14 deleterious(0.01) benign(0.015) TCGA-AA-A00N-01 8 37698746 37698746 A G GPR124 Missense_Mutation p.R964G 0.28 tolerated(0.38) benign(0.023) TCGA-AA-A00N-01 8 37720175 37720175 A G RAB11FIP1 3'UTR 0.29 TCGA-AA-A00N-01 8 37791909 37791909 A C GOT1L1 Missense_Mutation p.Y390D 0.03 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 37978507 37978507 G A ASH2L Silent p.P335P 0.16 TCGA-AA-A00N-01 8 38027375 38027375 A C LSM1 Missense_Mutation p.I59S 0.20 deleterious(0) probably_damaging(0.939) TCGA-AA-A00N-01 8 38697891 38697891 A C TACC1 Intron 0.31 TCGA-AA-A00N-01 8 38848996 38848996 C T TM2D2 Missense_Mutation p.R167Q 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 38947589 38947589 G A ADAM9 Missense_Mutation p.G698R 0.23 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 8 39091459 39091459 G A ADAM32 Missense_Mutation p.R559Q 0.30 tolerated(0.3) benign(0.121) TCGA-AA-A00N-01 8 39624523 39624523 C A ADAM2 Nonsense_Mutation p.E451* 0.14 TCGA-AA-A00N-01 8 41166582 41166582 C T SFRP1 Missense_Mutation p.E33K 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A00N-01 8 41552839 41552839 C T ANK1 Missense_Mutation p.V1032M 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-AA-A00N-01 8 41580738 41580738 C T ANK1 Missense_Mutation p.E305K 0.15 deleterious(0.01) possibly_damaging(0.881) TCGA-AA-A00N-01 8 41791251 41791251 G A KAT6A Missense_Mutation p.S1496L 0.19 unknown(0) TCGA-AA-A00N-01 8 41798484 41798484 C T KAT6A Missense_Mutation p.R972H 0.23 possibly_damaging(0.815) TCGA-AA-A00N-01 8 41804115 41804115 C T KAT6A Missense_Mutation p.D664N 0.26 possibly_damaging(0.619) TCGA-AA-A00N-01 8 42026614 42026614 T G AP3M2 3'UTR 0.21 TCGA-AA-A00N-01 8 42037582 42037582 G A PLAT Silent p.L409L 0.23 TCGA-AA-A00N-01 8 42046556 42046556 T C PLAT Missense_Mutation p.Y50C 0.19 deleterious(0.02) possibly_damaging(0.869) TCGA-AA-A00N-01 8 42231685 42231685 C T DKK4 Missense_Mutation p.R203Q 0.21 tolerated(0.31) benign(0.228) TCGA-AA-A00N-01 8 42611074 42611074 G A CHRNA6 Missense_Mutation p.S423L 0.23 tolerated(0.37) benign(0.001) TCGA-AA-A00N-01 8 43037391 43037391 A G HGSNAT Silent p.E372E 0.26 TCGA-AA-A00N-01 8 43212025 43212025 T G POTEA RNA 0.17 TCGA-AA-A00N-01 8 48794074 48794074 G T PRKDC Nonsense_Mutation p.S1656* 0.22 TCGA-AA-A00N-01 8 48842439 48842439 T G PRKDC Missense_Mutation p.N676H 0.18 possibly_damaging(0.879) TCGA-AA-A00N-01 8 49642308 49642308 C A EFCAB1 Missense_Mutation p.D148Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 8 49832991 49832991 G A SNAI2 Missense_Mutation p.S30F 0.27 tolerated(0.65) benign(0.372) TCGA-AA-A00N-01 8 49985442 49985442 G A C8orf22 Missense_Mutation p.R18Q 0.17 deleterious(0.05) benign(0.124) TCGA-AA-A00N-01 8 51465728 51465728 A G SNTG1 Missense_Mutation p.T267A 0.26 deleterious(0.01) benign(0.411) TCGA-AA-A00N-01 8 52733230 52733230 C T PCMTD1 Missense_Mutation p.R252Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 8 53079532 53079532 C T ST18 Missense_Mutation p.E362K 0.19 deleterious(0.03) possibly_damaging(0.721) TCGA-AA-A00N-01 8 53084821 53084821 T G ST18 Missense_Mutation p.E200D 0.25 tolerated(0.46) benign(0.014) TCGA-AA-A00N-01 8 53853299 53853299 G A NPBWR1 Missense_Mutation p.D278N 0.20 tolerated(0.11) probably_damaging(1) TCGA-AA-A00N-01 8 54866786 54866786 G T RGS20 Silent p.L298L 0.18 TCGA-AA-A00N-01 8 56436159 56436159 C A XKR4 Silent p.I442I 0.19 TCGA-AA-A00N-01 8 56737239 56737239 C T TGS1 Nonsense_Mutation p.R847* 0.26 TCGA-AA-A00N-01 8 56866526 56866526 T G LYN Missense_Mutation p.F258C 0.22 deleterious(0) probably_damaging(0.966) TCGA-AA-A00N-01 8 56985774 56985774 G A RPS20 Missense_Mutation p.R79C 0.20 deleterious(0.04) benign(0.235) TCGA-AA-A00N-01 8 59059512 59059512 C T FAM110B Silent p.A241A 0.17 TCGA-AA-A00N-01 8 59060188 59060188 C T FAM110B 3'UTR 0.26 TCGA-AA-A00N-01 8 59547899 59547899 C T NSMAF Silent p.K118K 0.20 TCGA-AA-A00N-01 8 63973773 63973773 T C TTPA 3'UTR 0.23 TCGA-AA-A00N-01 8 6500519 6500519 C A MCPH1 Silent p.S819S 0.24 TCGA-AA-A00N-01 8 65496150 65496150 T C BHLHE22 3'UTR 0.13 TCGA-AA-A00N-01 8 65528738 65528738 C A CYP7B1 Missense_Mutation p.E120D 0.18 tolerated(0.5) benign(0.109) TCGA-AA-A00N-01 8 66620173 66620173 G A MTFR1 Missense_Mutation p.R287Q 0.20 tolerated(0.1) benign(0.024) TCGA-AA-A00N-01 8 66963846 66963846 G A DNAJC5B Missense_Mutation p.E22K 0.19 tolerated(0.51) benign(0.108) TCGA-AA-A00N-01 8 67047241 67047241 G A TRIM55 Missense_Mutation p.D120N 0.20 tolerated(0.14) possibly_damaging(0.653) TCGA-AA-A00N-01 8 67047256 67047256 G A TRIM55 Missense_Mutation p.E125K 0.17 tolerated(0.16) probably_damaging(0.971) TCGA-AA-A00N-01 8 67047346 67047346 G T TRIM55 Missense_Mutation p.D155Y 0.11 deleterious(0) probably_damaging(0.918) TCGA-AA-A00N-01 8 67369078 67369078 G T ADHFE1 Missense_Mutation p.G338V 0.27 deleterious(0) possibly_damaging(0.861) TCGA-AA-A00N-01 8 67422372 67422372 C T C8orf46 Nonsense_Mutation p.R108* 0.18 TCGA-AA-A00N-01 8 67509575 67509575 G A MYBL1 Missense_Mutation p.L168F 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 67576841 67576841 G A VCPIP1 Nonsense_Mutation p.R785* 0.22 TCGA-AA-A00N-01 8 68107812 68107812 C T CSPP1 Missense_Mutation p.S1217L 0.19 deleterious(0) benign(0.251) TCGA-AA-A00N-01 8 68139531 68139531 G A ARFGEF1 Nonsense_Mutation p.R1253* 0.16 TCGA-AA-A00N-01 8 68972915 68972915 G A PREX2 Missense_Mutation p.E414K 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A00N-01 8 68984731 68984731 G T PREX2 Missense_Mutation p.D499Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 8 69031691 69031691 G A PREX2 Missense_Mutation p.R1149H 0.21 deleterious_low_confidence(0.01) benign(0.2) TCGA-AA-A00N-01 8 69400274 69400274 T C C8orf34 Silent p.D251D 0.20 TCGA-AA-A00N-01 8 70513932 70513932 A G SULF1 Missense_Mutation p.Y310C 0.20 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 8 70514036 70514036 C T SULF1 Missense_Mutation p.R345C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 8 70585088 70585088 C A SLCO5A1 3'UTR 0.26 TCGA-AA-A00N-01 8 70744105 70744105 A C SLCO5A1 Missense_Mutation p.I268M 0.18 tolerated(0.24) benign(0.202) TCGA-AA-A00N-01 8 70744575 70744575 C T SLCO5A1 Missense_Mutation p.A112T 0.19 tolerated_low_confidence(0.1) benign(0.011) TCGA-AA-A00N-01 8 71520395 71520395 G A TRAM1 Silent p.L14L 0.15 TCGA-AA-A00N-01 8 71646500 71646500 C A XKR9 Silent p.I321I 0.23 TCGA-AA-A00N-01 8 73480322 73480322 C T KCNB2 Missense_Mutation p.S118L 0.25 deleterious(0) possibly_damaging(0.547) TCGA-AA-A00N-01 8 74939065 74939065 A C LY96 Missense_Mutation p.K125Q 0.23 tolerated(0.28) benign(0.04) TCGA-AA-A00N-01 8 75737672 75737672 C T PI15 Missense_Mutation p.S63L 0.17 tolerated(0.05) benign(0.349) TCGA-AA-A00N-01 8 77761352 77761352 C A ZFHX4 Missense_Mutation p.F1211L 0.20 benign(0.294) TCGA-AA-A00N-01 8 77766835 77766835 C T ZFHX4 Missense_Mutation p.P2560S 0.14 possibly_damaging(0.663) TCGA-AA-A00N-01 8 77768353 77768353 C T ZFHX4 Missense_Mutation p.R3066C 0.12 probably_damaging(0.993) TCGA-AA-A00N-01 8 82607051 82607051 T C SLC10A5 Missense_Mutation p.K53E 0.26 tolerated(0.36) benign(0.004) TCGA-AA-A00N-01 8 82644882 82644882 C A CHMP4C Missense_Mutation p.F7L 0.21 tolerated(1) unknown(0) TCGA-AA-A00N-01 8 85441798 85441798 C T RALYL Missense_Mutation p.A94V 0.18 tolerated(0.12) benign(0.3) TCGA-AA-A00N-01 8 85799987 85799987 C T RALYL Silent p.F291F 0.28 TCGA-AA-A00N-01 8 86035667 86035667 A G LRRCC1 Missense_Mutation p.N317S 0.15 tolerated(0.3) benign(0.007) TCGA-AA-A00N-01 8 87151753 87151753 G T ATP6V0D2 Nonsense_Mutation p.E124* 0.08 TCGA-AA-A00N-01 8 87393792 87393792 G A WWP1 Missense_Mutation p.A90T 0.26 tolerated(0.24) benign(0.083) TCGA-AA-A00N-01 8 87570620 87570620 G A CPNE3 Silent p.T532T 0.24 TCGA-AA-A00N-01 8 87645036 87645036 A C CNGB3 Missense_Mutation p.F422V 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A00N-01 8 88884522 88884522 A C DCAF4L2 3'UTR 0.18 TCGA-AA-A00N-01 8 88885907 88885907 T C DCAF4L2 Missense_Mutation p.K98R 0.23 tolerated(0.08) probably_damaging(0.994) TCGA-AA-A00N-01 8 89053625 89053625 C T MMP16 3'UTR 0.17 TCGA-AA-A00N-01 8 89081599 89081599 T G MMP16 Intron 0.08 TCGA-AA-A00N-01 8 90936903 90936903 A C OSGIN2 Missense_Mutation p.K265Q 0.28 tolerated(0.68) benign(0.001) TCGA-AA-A00N-01 8 92346525 92346525 T G SLC26A7 Missense_Mutation p.I215M 0.22 deleterious(0.04) possibly_damaging(0.783) TCGA-AA-A00N-01 8 93026829 93026829 C T RUNX1T1 Missense_Mutation p.R160H 0.23 tolerated(0.09) benign(0.084) TCGA-AA-A00N-01 8 94821369 94821369 C A TMEM67 Missense_Mutation p.L881I 0.11 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 8 94934671 94934671 T A PDP1 Missense_Mutation p.S153R 0.33 deleterious(0) possibly_damaging(0.878) TCGA-AA-A00N-01 8 94937455 94937455 G A PDP1 3'UTR 0.23 TCGA-AA-A00N-01 8 95164213 95164213 A G CDH17 Missense_Mutation p.V560A 0.18 deleterious(0) probably_damaging(0.927) TCGA-AA-A00N-01 8 95538952 95538952 A G KIAA1429 Missense_Mutation p.L507S 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 8 95782778 95782778 C A DPY19L4 Missense_Mutation p.S478Y 0.17 tolerated(1) benign(0.038) TCGA-AA-A00N-01 8 97156710 97156710 G A GDF6 3'UTR 0.39 TCGA-AA-A00N-01 8 97244076 97244076 G A UQCRB Missense_Mutation p.R62C 0.07 deleterious(0.02) possibly_damaging(0.632) TCGA-AA-A00N-01 8 98155272 98155272 A G CPQ Missense_Mutation p.Y427C 0.16 deleterious(0.02) benign(0.276) TCGA-AA-A00N-01 8 99033468 99033468 G A MATN2 Missense_Mutation p.E619K 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A00N-01 8 99039682 99039682 G A MATN2 Missense_Mutation p.D661N 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 8 99205172 99205172 C T NIPAL2 3'UTR 0.20 TCGA-AA-A00N-01 8 99440421 99440421 G A KCNS2 Missense_Mutation p.D72N 0.09 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 8 99441497 99441497 T C KCNS2 Silent p.C430C 0.25 TCGA-AA-A00N-01 9 100193272 100193272 C T TDRD7 Missense_Mutation p.R89C 0.19 tolerated(0.1) benign(0.016) TCGA-AA-A00N-01 9 100308524 100308524 G A TMOD1 Missense_Mutation p.G60S 0.17 deleterious(0) possibly_damaging(0.877) TCGA-AA-A00N-01 9 100447246 100447246 C T XPA Missense_Mutation p.R211Q 0.05 deleterious(0) benign(0.291) TCGA-AA-A00N-01 9 101073404 101073404 G A GABBR2 Silent p.I659I 0.30 TCGA-AA-A00N-01 9 101597634 101597634 G A GALNT12 Missense_Mutation p.E341K 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 9 101611263 101611263 G T GALNT12 Missense_Mutation p.K545N 0.19 tolerated(0.62) benign(0.006) TCGA-AA-A00N-01 9 101832015 101832015 C A COL15A1 Nonsense_Mutation p.Y1338* 0.26 TCGA-AA-A00N-01 9 101832184 101832184 T C COL15A1 3'UTR 0.15 TCGA-AA-A00N-01 9 101891176 101891176 T G TGFBR1 Missense_Mutation p.F46C 0.14 tolerated(0.18) possibly_damaging(0.455) TCGA-AA-A00N-01 9 101900171 101900171 C T TGFBR1 Missense_Mutation p.A202V 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 9 101900210 101900210 G A TGFBR1 Missense_Mutation p.R215Q 0.16 deleterious(0) probably_damaging(0.964) TCGA-AA-A00N-01 9 101900288 101900288 C T TGFBR1 Missense_Mutation p.S241L 0.13 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 9 101980562 101980562 G T ALG2 Missense_Mutation p.S302Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 9 103109103 103109103 C A TEX10 Nonsense_Mutation p.E256* 0.20 TCGA-AA-A00N-01 9 103334804 103334804 G A TMEFF1 Missense_Mutation p.E302K 0.17 deleterious(0.02) benign(0.396) TCGA-AA-A00N-01 9 103340815 103340815 C A MURC Missense_Mutation p.F130L 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 9 103348192 103348192 C T MURC Missense_Mutation p.A185V 0.25 tolerated(0.12) benign(0.22) TCGA-AA-A00N-01 9 103348235 103348235 G T MURC Missense_Mutation p.K199N 0.18 deleterious(0) possibly_damaging(0.794) TCGA-AA-A00N-01 9 104152741 104152741 G A MRPL50 3'UTR 0.16 TCGA-AA-A00N-01 9 104356804 104356804 C T PPP3R2 Missense_Mutation p.D137N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A00N-01 9 104499593 104499593 G A GRIN3A Silent p.I223I 0.25 TCGA-AA-A00N-01 9 105757667 105757667 C T CYLC2 Missense_Mutation p.S2F 0.17 deleterious(0) probably_damaging(0.987) TCGA-AA-A00N-01 9 105767007 105767007 C T CYLC2 Missense_Mutation p.R71C 0.14 deleterious(0.03) probably_damaging(0.977) TCGA-AA-A00N-01 9 107299096 107299096 C A OR13C3 5'UTR 0.16 TCGA-AA-A00N-01 9 107457282 107457282 C A OR13D1 Missense_Mutation p.L194M 0.19 tolerated(0.06) benign(0.189) TCGA-AA-A00N-01 9 107521799 107521799 C A NIPSNAP3A 3'UTR 0.55 TCGA-AA-A00N-01 9 107588035 107588035 G A ABCA1 Missense_Mutation p.S824L 0.16 deleterious(0.02) benign(0.322) TCGA-AA-A00N-01 9 107588167 107588167 C T ABCA1 Missense_Mutation p.S780N 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 9 108234217 108234217 G T FSD1L Missense_Mutation p.E124D 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A00N-01 9 108536350 108536350 A C TMEM38B Missense_Mutation p.K289Q 0.17 deleterious(0.01) probably_damaging(0.946) TCGA-AA-A00N-01 9 111936842 111936842 C T EPB41L4B Missense_Mutation p.E899K 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AA-A00N-01 9 112018739 112018739 C T EPB41L4B Silent p.A258A 0.27 TCGA-AA-A00N-01 9 112189332 112189332 G A PTPN3 Missense_Mutation p.S300F 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 9 113065912 113065912 G A TXNDC8 3'UTR 0.49 TCGA-AA-A00N-01 9 113169334 113169334 T C SVEP1 Missense_Mutation p.Y2849C 0.19 probably_damaging(0.964) TCGA-AA-A00N-01 9 113192656 113192656 C T SVEP1 Missense_Mutation p.E1810K 0.24 benign(0.022) TCGA-AA-A00N-01 9 113341404 113341404 G A SVEP1 Silent p.I140I 0.20 TCGA-AA-A00N-01 9 113530341 113530341 C T MUSK Missense_Mutation p.P388S 0.16 tolerated(0.07) benign(0.029) TCGA-AA-A00N-01 9 114190404 114190404 A G KIAA0368 Missense_Mutation p.V501A 0.13 tolerated(0.87) benign(0.147) TCGA-AA-A00N-01 9 114409506 114409506 T G DNAJC25 Missense_Mutation p.I152M 0.05 deleterious(0) possibly_damaging(0.787) TCGA-AA-A00N-01 9 114548272 114548272 C T C9orf84 5'UTR 0.29 TCGA-AA-A00N-01 9 115651841 115651841 A G SLC46A2 Missense_Mutation p.F374S 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 9 115651842 115651842 A G SLC46A2 Missense_Mutation p.F374L 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 9 115760358 115760358 C A ZNF883 RNA 0.22 TCGA-AA-A00N-01 9 115932131 115932131 C T FKBP15 Missense_Mutation p.R953Q 0.11 tolerated_low_confidence(0.97) benign(0.001) TCGA-AA-A00N-01 9 115946582 115946582 C T FKBP15 Missense_Mutation p.R569Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 9 116152104 116152104 G A ALAD Missense_Mutation p.S192L 0.21 tolerated(0.32) possibly_damaging(0.877) TCGA-AA-A00N-01 9 116186496 116186496 A C C9orf43 Missense_Mutation p.K236T 0.11 deleterious(0) benign(0.056) TCGA-AA-A00N-01 9 116269811 116269811 G A RGS3 Missense_Mutation p.E444K 0.25 deleterious(0.02) possibly_damaging(0.879) TCGA-AA-A00N-01 9 116859632 116859632 G A KIF12 Missense_Mutation p.R61W 0.19 tolerated(0.13) probably_damaging(0.973) TCGA-AA-A00N-01 9 116956736 116956736 A C COL27A1 Missense_Mutation p.K690T 0.32 unknown(0) TCGA-AA-A00N-01 9 117008167 117008167 C T COL27A1 Missense_Mutation p.R986W 0.21 unknown(0) TCGA-AA-A00N-01 9 117053105 117053105 G A COL27A1 Missense_Mutation p.D1462N 0.25 unknown(0) TCGA-AA-A00N-01 9 117086077 117086077 C T ORM1 Silent p.Y83Y 0.17 TCGA-AA-A00N-01 9 117087089 117087089 C T ORM1 Silent p.F116F 0.21 TCGA-AA-A00N-01 9 117092797 117092797 C A ORM2 Missense_Mutation p.F66L 0.05 deleterious(0.01) possibly_damaging(0.738) TCGA-AA-A00N-01 9 117164990 117164990 G A DFNB31 3'UTR 0.11 TCGA-AA-A00N-01 9 117354866 117354866 A C ATP6V1G1 Missense_Mutation p.E39D 0.19 deleterious(0.03) possibly_damaging(0.816) TCGA-AA-A00N-01 9 117798462 117798462 G A TNC Silent p.L1857L 0.19 TCGA-AA-A00N-01 9 117849421 117849421 G A TNC Nonsense_Mutation p.R197* 0.22 TCGA-AA-A00N-01 9 119460081 119460081 C T TRIM32 Silent p.C20C 0.16 TCGA-AA-A00N-01 9 119567973 119567973 T C ASTN2 Silent p.L727L 0.25 TCGA-AA-A00N-01 9 123177407 123177407 C T CDK5RAP2 Missense_Mutation p.R1403Q 0.20 deleterious(0) possibly_damaging(0.885) TCGA-AA-A00N-01 9 123182103 123182103 T G CDK5RAP2 Silent p.T1380T 0.33 TCGA-AA-A00N-01 9 123715045 123715045 G A C5 Missense_Mutation p.A1668V 0.24 tolerated(0.1) benign(0.081) TCGA-AA-A00N-01 9 123725021 123725021 G A C5 Missense_Mutation p.R1478W 0.16 deleterious(0) probably_damaging(0.993) TCGA-AA-A00N-01 9 123783860 123783860 A G C5 Missense_Mutation p.V410A 0.23 tolerated(0.73) benign(0.002) TCGA-AA-A00N-01 9 123800211 123800211 G A C5 Missense_Mutation p.S147L 0.20 deleterious(0) probably_damaging(0.969) TCGA-AA-A00N-01 9 123914934 123914934 G T CNTRL Nonsense_Mutation p.E1379* 0.23 TCGA-AA-A00N-01 9 124093903 124093903 G A GSN Intron 0.21 TCGA-AA-A00N-01 9 124737165 124737165 C T TTLL11 Missense_Mutation p.E545K 0.18 deleterious(0) benign(0.294) TCGA-AA-A00N-01 9 125047526 125047526 C T MRRF Missense_Mutation p.S140L 0.17 deleterious(0.03) benign(0.114) TCGA-AA-A00N-01 9 125239294 125239294 G T OR1J1 Silent p.L304L 0.29 TCGA-AA-A00N-01 9 125316437 125316437 T G OR1N2 Nonsense_Mutation p.L330* 0.27 TCGA-AA-A00N-01 9 125423892 125423892 C A OR1L1 5'Flank 0.09 TCGA-AA-A00N-01 9 125551546 125551546 C T OR5C1 Missense_Mutation p.A112V 0.19 tolerated(0.33) possibly_damaging(0.619) TCGA-AA-A00N-01 9 125861826 125861826 C T RABGAP1 Missense_Mutation p.R963W 0.08 deleterious(0) probably_damaging(0.99) TCGA-AA-A00N-01 9 125895152 125895152 C T STRBP Silent p.A623A 0.20 TCGA-AA-A00N-01 9 125923329 125923329 T G STRBP Missense_Mutation p.D185A 0.11 deleterious(0.05) benign(0.338) TCGA-AA-A00N-01 9 127216840 127216840 G A GPR144 Missense_Mutation p.D386N 0.25 tolerated(0.5) benign(0.001) TCGA-AA-A00N-01 9 127622512 127622512 G A RPL35 Missense_Mutation p.L58F 0.24 deleterious(0.01) possibly_damaging(0.815) TCGA-AA-A00N-01 9 127644166 127644166 G A GOLGA1 Missense_Mutation p.A678V 0.17 tolerated(0.17) benign(0.063) TCGA-AA-A00N-01 9 127651758 127651758 C T GOLGA1 Missense_Mutation p.E519K 0.05 tolerated(0.22) benign(0.009) TCGA-AA-A00N-01 9 129143387 129143387 C T MVB12B Silent p.D83D 0.27 TCGA-AA-A00N-01 9 129870821 129870821 G A ANGPTL2 Missense_Mutation p.R64W 0.31 deleterious(0) possibly_damaging(0.693) TCGA-AA-A00N-01 9 130098493 130098493 C T GARNL3 Silent p.S320S 0.27 TCGA-AA-A00N-01 9 130420727 130420727 G T STXBP1 Missense_Mutation p.E81D 0.10 tolerated(0.28) benign(0.002) TCGA-AA-A00N-01 9 130432199 130432199 G T STXBP1 Missense_Mutation p.D309Y 0.17 deleterious(0) benign(0.141) TCGA-AA-A00N-01 9 130486766 130486766 G A TTC16 Intron 0.35 TCGA-AA-A00N-01 9 130710370 130710370 C T FAM102A Missense_Mutation p.R199Q 0.20 tolerated(0.07) possibly_damaging(0.644) TCGA-AA-A00N-01 9 130982360 130982360 G A DNM1 Missense_Mutation p.R228H 0.15 deleterious(0) probably_damaging(0.998) TCGA-AA-A00N-01 9 13113022 13113022 G A MPDZ Silent p.V1834V 0.26 TCGA-AA-A00N-01 9 131285014 131285014 A C GLE1 Missense_Mutation p.E167A 0.22 deleterious(0) probably_damaging(0.957) TCGA-AA-A00N-01 9 131811746 131811746 C T FAM73B Silent p.S169S 0.16 TCGA-AA-A00N-01 9 131862872 131862872 C T CRAT Missense_Mutation p.R301H 0.19 tolerated(0.34) benign(0.001) TCGA-AA-A00N-01 9 132630298 132630298 C T USP20 Silent p.F235F 0.23 TCGA-AA-A00N-01 9 132689618 132689618 T G FNBP1 Missense_Mutation p.K215N 0.28 tolerated(0.14) benign(0.007) TCGA-AA-A00N-01 9 133305773 133305773 G A HMCN2 Missense_Mutation p.R520H 0.20 tolerated(0.13) benign(0.023) TCGA-AA-A00N-01 9 133729569 133729569 C T ABL1 Silent p.F85F 0.19 TCGA-AA-A00N-01 9 133961019 133961019 C T LAMC3 Missense_Mutation p.A1380V 0.23 tolerated(0.05) benign(0.035) TCGA-AA-A00N-01 9 133995920 133995920 T C AIF1L 3'UTR 0.38 TCGA-AA-A00N-01 9 134151485 134151485 C T FAM78A Missense_Mutation p.G28R 0.20 tolerated(0.7) benign(0.002) TCGA-AA-A00N-01 9 134396764 134396764 T C POMT1 Missense_Mutation p.I599T 0.24 tolerated(0.31) benign(0.02) TCGA-AA-A00N-01 9 134396784 134396784 G A POMT1 Missense_Mutation p.A606T 0.08 deleterious(0.03) benign(0.081) TCGA-AA-A00N-01 9 134501317 134501317 T C RAPGEF1 Missense_Mutation p.N566S 0.24 tolerated(0.53) benign(0.044) TCGA-AA-A00N-01 9 135042351 135042351 C T NTNG2 Missense_Mutation p.R45C 0.23 deleterious(0.02) possibly_damaging(0.787) TCGA-AA-A00N-01 9 135206667 135206667 A G SETX Missense_Mutation p.V336A 0.26 tolerated(0.63) benign(0.003) TCGA-AA-A00N-01 9 135553405 135553405 C T GTF3C4 Silent p.F133F 0.37 TCGA-AA-A00N-01 9 135801122 135801122 A C TSC1 Missense_Mutation p.L72R 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 9 135942011 135942011 C T CEL Silent p.F214F 0.12 TCGA-AA-A00N-01 9 136233544 136233544 G A SURF4 Silent p.C81C 0.26 TCGA-AA-A00N-01 9 136501599 136501599 G A DBH Missense_Mutation p.A36T 0.18 tolerated(0.08) benign(0.027) TCGA-AA-A00N-01 9 137623973 137623973 G A COL5A1 Silent p.P463P 0.21 TCGA-AA-A00N-01 9 137697037 137697037 C T COL5A1 Missense_Mutation p.P1079S 0.18 unknown(0) TCGA-AA-A00N-01 9 137805432 137805432 G A FCN1 Missense_Mutation p.A112V 0.20 tolerated(0.35) benign(0) TCGA-AA-A00N-01 9 138378437 138378437 A G PPP1R26 Missense_Mutation p.D694G 0.18 deleterious(0.01) benign(0.053) TCGA-AA-A00N-01 9 138413309 138413309 G A LCN1 5'UTR 0.28 TCGA-AA-A00N-01 9 138415769 138415769 G T LCN1 Missense_Mutation p.K112N 0.05 deleterious(0.03) possibly_damaging(0.842) TCGA-AA-A00N-01 9 138416739 138416739 G A LCN1 Missense_Mutation p.G156E 0.17 deleterious(0.01) probably_damaging(0.941) TCGA-AA-A00N-01 9 139279207 139279207 T G SNAPC4 Missense_Mutation p.E462A 0.19 deleterious(0.02) possibly_damaging(0.783) TCGA-AA-A00N-01 9 139369518 139369518 C T SEC16A Silent p.S850S 0.13 TCGA-AA-A00N-01 9 139407557 139407557 A C NOTCH1 Missense_Mutation p.C795G 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 9 139877947 139877947 C T LCNL1 5'UTR 0.21 TCGA-AA-A00N-01 9 139925523 139925523 C T FUT7 Missense_Mutation p.R223H 0.25 tolerated(0.54) benign(0.068) TCGA-AA-A00N-01 9 139960770 139960770 G A SAPCD2 Missense_Mutation p.R210C 0.25 deleterious(0) probably_damaging(0.964) TCGA-AA-A00N-01 9 140878700 140878700 G A CACNA1B Silent p.T589T 0.20 TCGA-AA-A00N-01 9 140948390 140948390 G A CACNA1B Silent p.A1300A 0.29 TCGA-AA-A00N-01 9 140997173 140997173 A C CACNA1B Missense_Mutation p.S1745R 0.28 tolerated(0.16) benign(0.306) TCGA-AA-A00N-01 9 141014756 141014756 A C CACNA1B Missense_Mutation p.H2057P 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-AA-A00N-01 9 14307434 14307434 C T NFIB Missense_Mutation p.R39H 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 9 14720070 14720070 T C CER1 3'UTR 0.16 TCGA-AA-A00N-01 9 14722278 14722278 C A CER1 Missense_Mutation p.K131N 0.20 deleterious(0) possibly_damaging(0.783) TCGA-AA-A00N-01 9 15214181 15214181 A G TTC39B Silent p.F146F 0.18 TCGA-AA-A00N-01 9 15846804 15846804 G A CCDC171 Silent p.E1124E 0.18 TCGA-AA-A00N-01 9 16435954 16435954 G A BNC2 Silent p.S746S 0.20 TCGA-AA-A00N-01 9 16436658 16436658 G A BNC2 Missense_Mutation p.R512W 0.23 deleterious(0) probably_damaging(0.979) TCGA-AA-A00N-01 9 18826254 18826254 G T ADAMTSL1 Intron 0.18 TCGA-AA-A00N-01 9 18829875 18829875 C A ADAMTSL1 Silent p.I1383I 0.11 TCGA-AA-A00N-01 9 19116547 19116547 T G PLIN2 Missense_Mutation p.N338T 0.16 deleterious(0.03) possibly_damaging(0.588) TCGA-AA-A00N-01 9 19346864 19346864 G A DENND4C Missense_Mutation p.R1317Q 0.17 tolerated(0.07) benign(0.02) TCGA-AA-A00N-01 9 20740309 20740309 A C FOCAD Missense_Mutation p.E121A 0.19 tolerated(0.18) benign(0.004) TCGA-AA-A00N-01 9 20995592 20995592 G A FOCAD Silent p.K1790K 0.19 TCGA-AA-A00N-01 9 20995704 20995704 C A FOCAD 3'UTR 0.19 TCGA-AA-A00N-01 9 21077280 21077280 C T IFNB1 3'UTR 0.27 TCGA-AA-A00N-01 9 2115855 2115855 G A SMARCA2 Missense_Mutation p.G1164R 0.25 probably_damaging(0.989) TCGA-AA-A00N-01 9 21217004 21217004 C T IFNA16 Missense_Mutation p.D101N 0.17 tolerated(1) benign(0.015) TCGA-AA-A00N-01 9 21332977 21332977 C T KLHL9 3'UTR 0.20 TCGA-AA-A00N-01 9 21334137 21334137 C T KLHL9 Missense_Mutation p.R241Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 9 21367955 21367955 A G IFNA13 Missense_Mutation p.S19P 0.05 tolerated(0.5) benign(0.008) TCGA-AA-A00N-01 9 21385050 21385050 C A IFNA2 Missense_Mutation p.K93N 0.18 tolerated(0.15) benign(0.034) TCGA-AA-A00N-01 9 2181578 2181578 C T SMARCA2 Nonsense_Mutation p.R1421* 0.22 TCGA-AA-A00N-01 9 27056348 27056348 G A IFT74 Missense_Mutation p.R505K 0.18 tolerated(0.68) benign(0.009) TCGA-AA-A00N-01 9 27157925 27157925 G A TEK Missense_Mutation p.R50H 0.27 tolerated(0.25) benign(0) TCGA-AA-A00N-01 9 27158095 27158095 C T TEK Nonsense_Mutation p.R107* 0.23 TCGA-AA-A00N-01 9 27296684 27296684 C A EQTN Missense_Mutation p.K43N 0.19 tolerated(0.28) benign(0) TCGA-AA-A00N-01 9 27950328 27950328 G A LINGO2 Silent p.G114G 0.27 TCGA-AA-A00N-01 9 2831284 2831284 C T KIAA0020 Missense_Mutation p.E193K 0.21 tolerated(0.44) benign(0.005) TCGA-AA-A00N-01 9 32405519 32405519 C T ACO1 Silent p.F5F 0.19 TCGA-AA-A00N-01 9 32423350 32423350 A C ACO1 Missense_Mutation p.K335T 0.22 tolerated(0.41) benign(0.006) TCGA-AA-A00N-01 9 32542463 32542463 C A TOPORS Missense_Mutation p.R687I 0.20 tolerated_low_confidence(0.08) unknown(0) TCGA-AA-A00N-01 9 32632302 32632302 C A TAF1L Missense_Mutation p.Q1092H 0.30 deleterious(0) probably_damaging(0.928) TCGA-AA-A00N-01 9 32633044 32633044 C T TAF1L Missense_Mutation p.R845Q 0.21 deleterious(0.04) benign(0.037) TCGA-AA-A00N-01 9 32633390 32633390 C A TAF1L Missense_Mutation p.D730Y 0.14 deleterious(0) possibly_damaging(0.826) TCGA-AA-A00N-01 9 32633905 32633905 C T TAF1L Missense_Mutation p.R558Q 0.15 tolerated(0.08) benign(0.004) TCGA-AA-A00N-01 9 32633920 32633920 G A TAF1L Missense_Mutation p.S553F 0.15 tolerated(0.64) probably_damaging(0.997) TCGA-AA-A00N-01 9 32634751 32634751 C T TAF1L Missense_Mutation p.R276Q 0.10 deleterious(0.01) possibly_damaging(0.709) TCGA-AA-A00N-01 9 32785901 32785901 T G TMEM215 3'UTR 0.18 TCGA-AA-A00N-01 9 32786693 32786693 A G TMEM215 3'UTR 0.07 TCGA-AA-A00N-01 9 328076 328076 C T DOCK8 Nonsense_Mutation p.R317* 0.23 TCGA-AA-A00N-01 9 33352713 33352713 C T NFX1 Nonsense_Mutation p.Q909* 0.28 TCGA-AA-A00N-01 9 33464952 33464952 G A NOL6 Nonsense_Mutation p.R902* 0.27 TCGA-AA-A00N-01 9 33675446 33675446 T G PTENP1 RNA 0.20 TCGA-AA-A00N-01 9 33933619 33933619 C A UBAP2 Missense_Mutation p.K659N 0.15 tolerated(0.09) probably_damaging(0.94) TCGA-AA-A00N-01 9 34520817 34520817 A G DNAI1 3'UTR 0.22 TCGA-AA-A00N-01 9 34552170 34552170 A G CNTFR Silent p.S369S 0.24 TCGA-AA-A00N-01 9 34613678 34613678 G T DCTN3 3'UTR 0.24 TCGA-AA-A00N-01 9 34650384 34650384 G A GALT Missense_Mutation p.A360T 0.27 tolerated(0.43) benign(0.001) TCGA-AA-A00N-01 9 34725197 34725197 G A FAM205A Silent p.I680I 0.10 TCGA-AA-A00N-01 9 34725825 34725825 A G FAM205A Missense_Mutation p.F471S 0.12 deleterious(0) benign(0.094) TCGA-AA-A00N-01 9 34833802 34833802 C A FAM205B RNA 0.05 TCGA-AA-A00N-01 9 34834259 34834259 G A FAM205B RNA 0.14 TCGA-AA-A00N-01 9 34835490 34835490 C T FAM205B RNA 0.08 TCGA-AA-A00N-01 9 34976649 34976649 C T KIAA1045 Missense_Mutation p.A254V 0.16 tolerated(0.06) possibly_damaging(0.701) TCGA-AA-A00N-01 9 34977576 34977576 C T KIAA1045 Silent p.S348S 0.20 TCGA-AA-A00N-01 9 34977610 34977610 A G KIAA1045 Missense_Mutation p.T360A 0.07 tolerated(1) benign(0) TCGA-AA-A00N-01 9 35043726 35043726 A G C9orf131 Missense_Mutation p.D367G 0.13 tolerated(0.21) possibly_damaging(0.765) TCGA-AA-A00N-01 9 35092618 35092618 C T PIGO Silent p.P422P 0.29 TCGA-AA-A00N-01 9 35100957 35100957 C T STOML2 Missense_Mutation p.R259Q 0.18 tolerated(0.48) benign(0.012) TCGA-AA-A00N-01 9 35449721 35449721 T G ATP8B5P RNA 0.11 TCGA-AA-A00N-01 9 35561007 35561007 C T RUSC2 Missense_Mutation p.A1421V 0.23 tolerated(0.16) benign(0.01) TCGA-AA-A00N-01 9 35607377 35607377 C T TESK1 Silent p.F197F 0.20 TCGA-AA-A00N-01 9 35612862 35612862 C A CD72 Nonsense_Mutation p.E273* 0.19 TCGA-AA-A00N-01 9 35685107 35685107 C T TPM2 Missense_Mutation p.R198Q 0.17 deleterious(0.04) benign(0.038) TCGA-AA-A00N-01 9 35810657 35810657 C A SPAG8 Missense_Mutation p.E354D 0.22 deleterious(0.03) possibly_damaging(0.768) TCGA-AA-A00N-01 9 35811028 35811028 G A SPAG8 Silent p.V297V 0.34 TCGA-AA-A00N-01 9 35842452 35842452 C A TMEM8B Missense_Mutation p.S6Y 0.27 deleterious(0) possibly_damaging(0.691) TCGA-AA-A00N-01 9 36669327 36669327 G T MELK Nonsense_Mutation p.E477* 0.22 TCGA-AA-A00N-01 9 37002659 37002659 C T PAX5 Missense_Mutation p.R197H 0.14 deleterious(0) probably_damaging(0.953) TCGA-AA-A00N-01 9 38396977 38396977 G T ALDH1B1 Missense_Mutation p.R411I 0.27 tolerated(0.06) benign(0.421) TCGA-AA-A00N-01 9 38593874 38593874 G A ANKRD18A Silent p.V629V 0.15 TCGA-AA-A00N-01 9 40773362 40773362 G T ZNF658 Missense_Mutation p.S638Y 0.22 deleterious(0) probably_damaging(0.94) TCGA-AA-A00N-01 9 446482 446482 C T DOCK8 Missense_Mutation p.P1898L 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 9 5054592 5054592 G A JAK2 Missense_Mutation p.R215Q 0.21 deleterious(0.05) benign(0.03) TCGA-AA-A00N-01 9 5164126 5164126 C A INSL6 Missense_Mutation p.E143D 0.17 tolerated(0.16) possibly_damaging(0.874) TCGA-AA-A00N-01 9 5335199 5335199 T C RLN1 3'UTR 0.29 TCGA-AA-A00N-01 9 5522545 5522545 A G PDCD1LG2 5'UTR 0.19 TCGA-AA-A00N-01 9 5919959 5919959 G T KIAA2026 Missense_Mutation p.L2013I 0.15 tolerated(0.25) benign(0.008) TCGA-AA-A00N-01 9 6014743 6014743 C T RANBP6 Missense_Mutation p.E289K 0.23 deleterious(0.02) probably_damaging(1) TCGA-AA-A00N-01 9 6460659 6460659 T C UHRF2 Missense_Mutation p.V244A 0.24 tolerated(0.06) benign(0.146) TCGA-AA-A00N-01 9 6540132 6540132 C A GLDC Nonsense_Mutation p.E862* 0.20 TCGA-AA-A00N-01 9 6587268 6587268 C A GLDC Nonsense_Mutation p.E575* 0.17 TCGA-AA-A00N-01 9 71397400 71397400 G A FAM122A 3'UTR 0.22 TCGA-AA-A00N-01 9 71509489 71509489 G A PIP5K1B Missense_Mutation p.E236K 0.20 tolerated(0.08) benign(0.041) TCGA-AA-A00N-01 9 72132004 72132004 C T APBA1 Silent p.P41P 0.30 TCGA-AA-A00N-01 9 72897444 72897444 G A SMC5 Missense_Mutation p.R309Q 0.05 tolerated(0.1) benign(0.064) TCGA-AA-A00N-01 9 73213485 73213485 G A TRPM3 Silent p.V954V 0.20 TCGA-AA-A00N-01 9 740881 740881 C T KANK1 Missense_Mutation p.R1215W 0.21 deleterious(0) benign(0.102) TCGA-AA-A00N-01 9 742230 742230 C T KANK1 Missense_Mutation p.A1241V 0.14 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 9 74360184 74360184 C T TMEM2 Missense_Mutation p.D262N 0.13 tolerated(0.6) benign(0) TCGA-AA-A00N-01 9 77249591 77249591 C G RORB Missense_Mutation p.C46W 0.12 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 9 77282783 77282783 C T RORB Silent p.I359I 0.23 TCGA-AA-A00N-01 9 77354349 77354349 C A TRPM6 Missense_Mutation p.R1835I 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 9 77377865 77377865 C A TRPM6 Missense_Mutation p.R1241I 0.23 tolerated(0.07) benign(0.365) TCGA-AA-A00N-01 9 77411736 77411736 A G TRPM6 Missense_Mutation p.V771A 0.25 deleterious(0.02) possibly_damaging(0.529) TCGA-AA-A00N-01 9 77416994 77416994 T C TRPM6 Missense_Mutation p.D610G 0.14 deleterious(0) probably_damaging(0.945) TCGA-AA-A00N-01 9 77435336 77435336 G A TRPM6 Nonsense_Mutation p.R340* 0.24 TCGA-AA-A00N-01 9 78711018 78711018 C T PCSK5 Silent p.I369I 0.19 TCGA-AA-A00N-01 9 79118780 79118780 C A GCNT1 3'UTR 0.17 TCGA-AA-A00N-01 9 79120313 79120313 C T GCNT1 3'UTR 0.30 TCGA-AA-A00N-01 9 79461486 79461486 C T PRUNE2 Silent p.E151E 0.33 TCGA-AA-A00N-01 9 79852934 79852934 G T VPS13A Missense_Mutation p.D538Y 0.18 deleterious(0) possibly_damaging(0.492) TCGA-AA-A00N-01 9 79910639 79910639 T C VPS13A Missense_Mutation p.F1230S 0.28 deleterious(0) benign(0.159) TCGA-AA-A00N-01 9 79929582 79929582 T C VPS13A Splice_Site p.X1471_splice 0.18 TCGA-AA-A00N-01 9 79975531 79975531 G A VPS13A Missense_Mutation p.E2729K 0.17 tolerated(0.17) benign(0.002) TCGA-AA-A00N-01 9 80881583 80881583 A G CEP78 Missense_Mutation p.N692D 0.21 deleterious_low_confidence(0.05) benign(0.201) TCGA-AA-A00N-01 9 8341948 8341948 G A PTPRD Silent p.I1564I 0.24 TCGA-AA-A00N-01 9 84530360 84530360 G A SPATA31D5P RNA 0.32 TCGA-AA-A00N-01 9 84531580 84531580 C A SPATA31D5P RNA 0.18 TCGA-AA-A00N-01 9 84532724 84532724 G A SPATA31D5P RNA 0.18 TCGA-AA-A00N-01 9 84605897 84605897 C T SPATA31D1 Missense_Mutation p.T171I 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 9 8484264 8484264 T G PTPRD Missense_Mutation p.N1090H 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A00N-01 9 8484375 8484375 G T PTPRD Missense_Mutation p.L1053I 0.20 tolerated(0.21) benign(0.443) TCGA-AA-A00N-01 9 86322433 86322433 C A UBQLN1 Missense_Mutation p.E54D 0.25 tolerated(0.45) probably_damaging(0.938) TCGA-AA-A00N-01 9 86587059 86587059 C T HNRNPK Missense_Mutation p.D231N 0.22 tolerated(0.14) benign(0.043) TCGA-AA-A00N-01 9 87636192 87636192 G A NTRK2 Missense_Mutation p.R786Q 0.22 deleterious(0.02) probably_damaging(0.988) TCGA-AA-A00N-01 9 88836537 88836537 T G C9orf153 3'UTR 0.29 TCGA-AA-A00N-01 9 88836593 88836593 C T C9orf153 3'UTR 0.08 TCGA-AA-A00N-01 9 90262264 90262264 C T DAPK1 Silent p.V425V 0.18 TCGA-AA-A00N-01 9 90343174 90343174 G T CTSL Nonsense_Mutation p.E87* 0.06 TCGA-AA-A00N-01 9 90345976 90345976 G T CTSL Missense_Mutation p.R319I 0.23 deleterious(0) benign(0.049) TCGA-AA-A00N-01 9 90500550 90500550 G T SPATA31E1 Missense_Mutation p.R383I 0.21 deleterious(0.02) benign(0.395) TCGA-AA-A00N-01 9 90534218 90534218 C T SPATA31C1 RNA 0.25 TCGA-AA-A00N-01 9 91262351 91262351 G T RP13-60M5.2 RNA 0.22 TCGA-AA-A00N-01 9 91609297 91609297 C A C9orf47 3'UTR 0.18 TCGA-AA-A00N-01 9 91616472 91616472 C T S1PR3 Silent p.F119F 0.24 TCGA-AA-A00N-01 9 91618080 91618080 C T S1PR3 3'UTR 0.12 TCGA-AA-A00N-01 9 94486762 94486762 C T ROR2 Missense_Mutation p.D672N 0.12 deleterious(0) probably_damaging(0.994) TCGA-AA-A00N-01 9 95258609 95258609 T G ECM2 Missense_Mutation p.Q696H 0.23 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 9 95481396 95481396 C T BICD2 Missense_Mutation p.D511N 0.21 tolerated(0.36) benign(0.031) TCGA-AA-A00N-01 9 95485059 95485059 C T BICD2 Missense_Mutation p.R162H 0.37 tolerated(0.25) probably_damaging(0.944) TCGA-AA-A00N-01 9 95610026 95610026 C A ZNF484 Missense_Mutation p.R350I 0.08 deleterious(0) benign(0.098) TCGA-AA-A00N-01 9 95610657 95610657 G A ZNF484 Missense_Mutation p.R140C 0.16 deleterious(0.05) benign(0.27) TCGA-AA-A00N-01 9 96425881 96425881 A C PHF2 Missense_Mutation p.K634T 0.22 deleterious(0.03) unknown(0) TCGA-AA-A00N-01 9 97084540 97084540 C T NUTM2F Missense_Mutation p.R262Q 0.26 tolerated(1) benign(0.082) TCGA-AA-A00N-01 9 97844935 97844935 G A C9orf3 Missense_Mutation p.E800K 0.24 tolerated(0.42) benign(0.009) TCGA-AA-A00N-01 9 97864100 97864100 G T FANCC Silent p.I522I 0.17 TCGA-AA-A00N-01 9 98231321 98231321 C T PTCH1 Silent p.T654T 0.13 TCGA-AA-A00N-01 9 98774556 98774556 G A ERCC6L2 Missense_Mutation p.E214K 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-AA-A00N-01 9 98997822 98997822 C T HSD17B3 Missense_Mutation p.A285T 0.21 deleterious(0.01) benign(0.071) TCGA-AA-A00N-01 9 99083606 99083606 C A SLC35D2 Missense_Mutation p.R311I 0.20 tolerated(0.26) benign(0.285) TCGA-AA-A00N-01 9 99157134 99157134 C T ZNF367 Missense_Mutation p.G221E 0.21 deleterious(0) probably_damaging(0.943) TCGA-AA-A00N-01 9 99797124 99797124 G A CTSV Silent p.G263G 0.20 TCGA-AA-A00N-01 X 100277038 100277038 A G TRMT2B Missense_Mutation p.V257A 0.37 tolerated(0.82) benign(0.001) TCGA-AA-A00N-01 X 10046904 10046904 C T WWC3 Missense_Mutation p.R96C 0.45 deleterious(0) probably_damaging(0.944) TCGA-AA-A00N-01 X 100613399 100613399 T C BTK Missense_Mutation p.Y334C 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 X 100629612 100629612 C T BTK Missense_Mutation p.S51N 0.46 tolerated(0.32) benign(0.042) TCGA-AA-A00N-01 X 100630266 100630266 C T BTK Missense_Mutation p.A3T 0.07 tolerated(0.7) benign(0.002) TCGA-AA-A00N-01 X 100653895 100653895 G A GLA Nonsense_Mutation p.R227* 0.35 TCGA-AA-A00N-01 X 10090717 10090717 C T WWC3 Silent p.S563S 0.44 TCGA-AA-A00N-01 X 101770060 101770060 T A TMSB15A Missense_Mutation p.E11V 0.37 deleterious(0.01) probably_damaging(0.937) TCGA-AA-A00N-01 X 101818345 101818345 C A NXF4 RNA 0.32 TCGA-AA-A00N-01 X 101857761 101857761 T C ARMCX5 Missense_Mutation p.V231A 0.34 tolerated(0.27) probably_damaging(0.991) TCGA-AA-A00N-01 X 101913584 101913584 G T GPRASP1 3'UTR 0.33 TCGA-AA-A00N-01 X 101971999 101971999 G A GPRASP2 Silent p.T734T 0.36 TCGA-AA-A00N-01 X 102005483 102005483 C T BHLHB9 Silent p.G520G 0.35 TCGA-AA-A00N-01 X 102331202 102331202 G A NXF3 3'UTR 0.41 TCGA-AA-A00N-01 X 102471567 102471567 T C BEX4 3'UTR 0.22 TCGA-AA-A00N-01 X 102612838 102612838 G A WBP5 Missense_Mutation p.E76K 0.50 deleterious(0) probably_damaging(0.996) TCGA-AA-A00N-01 X 102931452 102931452 C T MORF4L2 Silent p.S168S 0.10 TCGA-AA-A00N-01 X 102979101 102979101 G A GLRA4 Silent p.F133F 0.37 TCGA-AA-A00N-01 X 103498867 103498867 G A ESX1 Silent p.F158F 0.40 TCGA-AA-A00N-01 X 105150462 105150462 C T NRK Missense_Mutation p.R301C 0.08 deleterious(0) possibly_damaging(0.651) TCGA-AA-A00N-01 X 105168910 105168910 C T NRK Nonsense_Mutation p.R1068* 0.07 TCGA-AA-A00N-01 X 105452098 105452098 A G MUM1L1 3'UTR 0.44 TCGA-AA-A00N-01 X 106184786 106184786 G A MORC4 Missense_Mutation p.R913C 0.51 deleterious(0) probably_damaging(0.927) TCGA-AA-A00N-01 X 106186340 106186340 G A MORC4 Missense_Mutation p.A594V 0.58 tolerated(0.31) benign(0.056) TCGA-AA-A00N-01 X 107170080 107170080 A G MID2 Missense_Mutation p.N662S 0.52 tolerated(0.56) probably_damaging(0.975) TCGA-AA-A00N-01 X 107431200 107431200 G T COL4A6 Missense_Mutation p.L550I 0.45 possibly_damaging(0.7) TCGA-AA-A00N-01 X 108652239 108652239 G T GUCY2F Silent p.L650L 0.42 TCGA-AA-A00N-01 X 108868049 108868049 C A KCNE1L Missense_Mutation p.M67I 0.46 deleterious(0.01) probably_damaging(0.969) TCGA-AA-A00N-01 X 11196313 11196313 A C ARHGAP6 Silent p.P512P 0.47 TCGA-AA-A00N-01 X 114427425 114427425 A C RBMXL3 3'UTR 0.39 TCGA-AA-A00N-01 X 114536596 114536596 C T LUZP4 Missense_Mutation p.A44V 0.32 deleterious(0.02) probably_damaging(0.931) TCGA-AA-A00N-01 X 115304069 115304069 T G AGTR2 Missense_Mutation p.F179C 0.09 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 X 117679307 117679307 G T DOCK11 Missense_Mutation p.K138N 0.07 deleterious(0.03) probably_damaging(1) TCGA-AA-A00N-01 X 117773442 117773442 A C DOCK11 Missense_Mutation p.K1349T 0.07 deleterious(0) possibly_damaging(0.783) TCGA-AA-A00N-01 X 118219434 118219434 T G KIAA1210 Missense_Mutation p.K1587T 0.39 tolerated(0.09) benign(0.032) TCGA-AA-A00N-01 X 118797585 118797585 G A SEPT6 Silent p.F67F 0.40 TCGA-AA-A00N-01 X 118893355 118893355 C T SOWAHD Missense_Mutation p.A242V 0.26 deleterious(0) probably_damaging(0.962) TCGA-AA-A00N-01 X 119390814 119390814 T G ZBTB33 3'UTR 0.38 TCGA-AA-A00N-01 X 119410801 119410801 T C TMEM255A Missense_Mutation p.N229S 0.54 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A00N-01 X 119760717 119760717 G A C1GALT1C1 Missense_Mutation p.S102F 0.43 deleterious(0) probably_damaging(0.952) TCGA-AA-A00N-01 X 120181914 120181914 G A GLUD2 Missense_Mutation p.D126N 0.35 tolerated(1) benign(0.005) TCGA-AA-A00N-01 X 122747990 122747990 T G THOC2 Missense_Mutation p.E1454D 0.45 tolerated(0.13) benign(0.022) TCGA-AA-A00N-01 X 122757735 122757735 T G THOC2 Missense_Mutation p.K1136Q 0.45 tolerated(0.24) possibly_damaging(0.474) TCGA-AA-A00N-01 X 123185021 123185021 T C STAG2 Silent p.Y356Y 0.43 TCGA-AA-A00N-01 X 12632965 12632965 C T FRMPD4 Silent p.S129S 0.36 TCGA-AA-A00N-01 X 127186008 127186008 C T ACTRT1 Missense_Mutation p.E60K 0.09 tolerated(0.06) possibly_damaging(0.874) TCGA-AA-A00N-01 X 128605211 128605211 C T SMARCA1 Silent p.E845E 0.36 TCGA-AA-A00N-01 X 128902350 128902350 C T XPNPEP2 Silent p.F638F 0.38 TCGA-AA-A00N-01 X 128944879 128944879 A G ZDHHC9 Splice_Site p.X326_splice 0.12 TCGA-AA-A00N-01 X 129264057 129264057 G A AIFM1 Missense_Mutation p.A553V 0.08 tolerated(0.45) benign(0.001) TCGA-AA-A00N-01 X 129306282 129306282 C T RAB33A Silent p.G82G 0.27 TCGA-AA-A00N-01 X 12937553 12937553 C T TLR8 Missense_Mutation p.L132F 0.13 deleterious(0) probably_damaging(0.988) TCGA-AA-A00N-01 X 12939795 12939795 T C TLR8 Missense_Mutation p.F879S 0.47 deleterious(0.02) possibly_damaging(0.474) TCGA-AA-A00N-01 X 130219643 130219643 G A ARHGAP36 Missense_Mutation p.R346H 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A00N-01 X 130415222 130415222 A G IGSF1 Missense_Mutation p.I539T 0.38 tolerated(0.1) benign(0.281) TCGA-AA-A00N-01 X 130678856 130678856 A G OR13H1 Missense_Mutation p.D270G 0.30 tolerated(0.55) benign(0.248) TCGA-AA-A00N-01 X 131762446 131762446 C T HS6ST2 Silent p.P581P 0.09 TCGA-AA-A00N-01 X 13337101 13337101 G A ATXN3L Missense_Mutation p.S318L 0.10 tolerated_low_confidence(0.09) benign(0.014) TCGA-AA-A00N-01 X 133549255 133549255 C T PHF6 Intron 0.07 TCGA-AA-A00N-01 X 133988177 133988177 C T FAM122C Missense_Mutation p.R167C 0.09 deleterious(0.01) benign(0.272) TCGA-AA-A00N-01 X 134185155 134185155 C T FAM127B 3'UTR 0.39 TCGA-AA-A00N-01 X 134947909 134947909 C T CT45A5 Missense_Mutation p.R139Q 0.11 tolerated(0.27) benign(0.002) TCGA-AA-A00N-01 X 134988659 134988659 C T SAGE1 Missense_Mutation p.R229C 0.19 deleterious(0.03) possibly_damaging(0.496) TCGA-AA-A00N-01 X 135428072 135428072 T A GPR112 Missense_Mutation p.F736Y 0.27 deleterious(0.04) benign(0.342) TCGA-AA-A00N-01 X 135441480 135441480 G A GPR112 Missense_Mutation p.S2337N 0.51 tolerated(1) benign(0) TCGA-AA-A00N-01 X 135445657 135445657 C G GPR112 Silent p.G2433G 0.07 TCGA-AA-A00N-01 X 135487944 135487944 T C GPR112 Silent p.V2916V 0.51 TCGA-AA-A00N-01 X 135632931 135632931 G T VGLL1 Missense_Mutation p.K213N 0.51 deleterious(0) probably_damaging(0.983) TCGA-AA-A00N-01 X 136112696 136112696 G A GPR101 Missense_Mutation p.R380C 0.41 deleterious(0) probably_damaging(0.941) TCGA-AA-A00N-01 X 13681168 13681168 C A TCEANC Missense_Mutation p.L211I 0.34 tolerated(0.06) possibly_damaging(0.895) TCGA-AA-A00N-01 X 13762615 13762615 C T OFD1 Missense_Mutation p.S165L 0.05 tolerated(0.12) benign(0.023) TCGA-AA-A00N-01 X 138698530 138698530 T G MCF2 Missense_Mutation p.N428H 0.09 tolerated(0.1) benign(0.016) TCGA-AA-A00N-01 X 138708885 138708885 T G MCF2 Missense_Mutation p.K217Q 0.10 tolerated(0.35) benign(0.342) TCGA-AA-A00N-01 X 138864829 138864829 C A ATP11C Missense_Mutation p.R613I 0.51 tolerated(0.1) benign(0.005) TCGA-AA-A00N-01 X 138870503 138870503 C T ATP11C Splice_Site p.X460_splice 0.28 TCGA-AA-A00N-01 X 1401588 1401588 A G CSF2RA 5'UTR 0.22 TCGA-AA-A00N-01 X 140270954 140270954 C T LDOC1 Missense_Mutation p.D85N 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 X 140785584 140785584 T G SPANXD 3'UTR 0.04 TCGA-AA-A00N-01 X 140786634 140786634 C A SPANXD 5'UTR 0.34 TCGA-AA-A00N-01 X 140994260 140994260 C A MAGEC1 Missense_Mutation p.S357Y 0.51 tolerated_low_confidence(0.09) possibly_damaging(0.608) TCGA-AA-A00N-01 X 140995220 140995220 A G MAGEC1 Missense_Mutation p.Q677R 0.09 deleterious_low_confidence(0.01) benign(0.069) TCGA-AA-A00N-01 X 140996561 140996561 C T MAGEC1 Missense_Mutation p.S1124L 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-A00N-01 X 141291605 141291605 T C MAGEC2 Missense_Mutation p.T57A 0.15 tolerated(0.1) benign(0) TCGA-AA-A00N-01 X 141291630 141291630 T G MAGEC2 Missense_Mutation p.L48F 0.50 tolerated(0.12) possibly_damaging(0.86) TCGA-AA-A00N-01 X 142718880 142718880 C T SLITRK4 Silent p.S15S 0.11 TCGA-AA-A00N-01 X 1471386 1471386 C T IL3RA Silent p.V201V 0.07 TCGA-AA-A00N-01 X 147743636 147743636 A G AFF2 Missense_Mutation p.T130A 0.10 tolerated(0.2) benign(0.007) TCGA-AA-A00N-01 X 148038046 148038046 C T AFF2 Missense_Mutation p.A824V 0.39 tolerated(0.39) benign(0.19) TCGA-AA-A00N-01 X 14862651 14862651 G A FANCB Silent p.F713F 0.42 TCGA-AA-A00N-01 X 149014205 149014205 C T MAGEA8 3'UTR 0.04 TCGA-AA-A00N-01 X 149899076 149899076 G T MTMR1 Missense_Mutation p.R238I 0.30 deleterious(0) probably_damaging(0.952) TCGA-AA-A00N-01 X 149963717 149963717 C T CD99L2 Missense_Mutation p.R131Q 0.45 tolerated(0.7) benign(0.013) TCGA-AA-A00N-01 X 1501302 1501302 A G IL3RA Missense_Mutation p.K361E 0.19 tolerated(0.53) benign(0.017) TCGA-AA-A00N-01 X 150868495 150868495 C T PRRG3 Missense_Mutation p.S12L 0.35 deleterious(0) benign(0.012) TCGA-AA-A00N-01 X 151123951 151123951 G T GABRE Missense_Mutation p.F342L 0.39 tolerated(1) benign(0.017) TCGA-AA-A00N-01 X 151283787 151283787 C T RP11-1007I13.4 RNA 0.44 TCGA-AA-A00N-01 X 151283805 151283805 C T RP11-1007I13.4 RNA 0.44 TCGA-AA-A00N-01 X 151806758 151806758 C T GABRQ Silent p.F34F 0.10 TCGA-AA-A00N-01 X 152159400 152159400 A G PNMA5 Missense_Mutation p.F248S 0.30 deleterious(0) probably_damaging(0.978) TCGA-AA-A00N-01 X 152482507 152482507 G A MAGEA1 Silent p.S168S 0.12 TCGA-AA-A00N-01 X 152616734 152616734 C T ZNF275 3'UTR 0.51 TCGA-AA-A00N-01 X 152684162 152684162 A T ZFP92 Missense_Mutation p.Y22F 0.40 deleterious(0.01) possibly_damaging(0.475) TCGA-AA-A00N-01 X 153048492 153048492 G T SRPK3 Missense_Mutation p.G223W 0.12 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 X 153050264 153050264 C T SRPK3 Silent p.I436I 0.08 TCGA-AA-A00N-01 X 153068994 153068994 C T PDZD4 Silent p.E708E 0.45 TCGA-AA-A00N-01 X 153070250 153070250 C T PDZD4 Missense_Mutation p.E290K 0.07 tolerated(0.11) probably_damaging(0.931) TCGA-AA-A00N-01 X 153133485 153133485 A G L1CAM Missense_Mutation p.V599A 0.42 tolerated(0.78) benign(0.001) TCGA-AA-A00N-01 X 153420167 153420167 G A OPN1LW Missense_Mutation p.A233T 0.04 tolerated(0.39) benign(0.009) TCGA-AA-A00N-01 X 153551557 153551557 C T TKTL1 Silent p.D397D 0.53 TCGA-AA-A00N-01 X 153593043 153593043 C T FLNA Missense_Mutation p.D625N 0.12 deleterious(0.05) probably_damaging(0.951) TCGA-AA-A00N-01 X 153944425 153944425 G A GAB3 Silent p.F84F 0.10 TCGA-AA-A00N-01 X 154129706 154129706 G A F8 Missense_Mutation p.P2043S 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A00N-01 X 154132793 154132793 C A F8 Missense_Mutation p.D1865Y 0.11 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 X 154158724 154158724 G T F8 Nonsense_Mutation p.S1114* 0.09 TCGA-AA-A00N-01 X 154159625 154159625 G A F8 Nonsense_Mutation p.R814* 0.31 TCGA-AA-A00N-01 X 154175987 154175987 G A F8 Missense_Mutation p.S700L 0.39 tolerated(0.07) benign(0.296) TCGA-AA-A00N-01 X 154292254 154292254 C A CMC4 Missense_Mutation p.Q15H 0.09 deleterious(0) probably_damaging(0.992) TCGA-AA-A00N-01 X 1546818 1546818 C T ASMTL Missense_Mutation p.E236K 0.32 tolerated(0.07) benign(0.086) TCGA-AA-A00N-01 X 155004704 155004704 A C SPRY3 3'UTR 0.06 TCGA-AA-A00N-01 X 155006101 155006101 A C SPRY3 3'UTR 0.28 TCGA-AA-A00N-01 X 155119263 155119263 A G VAMP7 Missense_Mutation p.Y45C 0.22 deleterious(0) possibly_damaging(0.894) TCGA-AA-A00N-01 X 155171884 155171884 C A VAMP7 3'UTR 0.22 TCGA-AA-A00N-01 X 15588440 15588440 T G ACE2 Missense_Mutation p.K625T 0.10 deleterious(0.02) possibly_damaging(0.694) TCGA-AA-A00N-01 X 1584669 1584669 G A P2RY8 Silent p.I261I 0.27 TCGA-AA-A00N-01 X 16870937 16870937 C T RBBP7 Missense_Mutation p.E318K 0.07 deleterious(0.02) probably_damaging(0.971) TCGA-AA-A00N-01 X 17750208 17750208 G A NHS Missense_Mutation p.R1506H 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-A00N-01 X 18221838 18221838 G A BEND2 Silent p.F230F 0.19 TCGA-AA-A00N-01 X 18800496 18800496 G A PPEF1 Silent p.T246T 0.37 TCGA-AA-A00N-01 X 18911622 18911622 G A PHKA2 Missense_Mutation p.S1230L 0.12 tolerated(0.08) benign(0.251) TCGA-AA-A00N-01 X 18912487 18912487 G A PHKA2 Silent p.V1124V 0.11 TCGA-AA-A00N-01 X 19031841 19031841 C T GPR64 Silent p.A354A 0.07 TCGA-AA-A00N-01 X 19037728 19037728 T A GPR64 Missense_Mutation p.E233D 0.36 deleterious_low_confidence(0.01) benign(0.141) TCGA-AA-A00N-01 X 19086880 19086880 G T GPR64 Missense_Mutation p.L25I 0.14 deleterious_low_confidence(0.01) benign(0.213) TCGA-AA-A00N-01 X 21674867 21674867 C T KLHL34 Missense_Mutation p.R347H 0.52 tolerated(0.28) benign(0.006) TCGA-AA-A00N-01 X 21675819 21675819 C T KLHL34 Missense_Mutation p.D30N 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 X 21995313 21995313 C T SMS Missense_Mutation p.S155L 0.46 deleterious(0.01) possibly_damaging(0.781) TCGA-AA-A00N-01 X 22051147 22051147 C T PHEX Silent p.S8S 0.53 TCGA-AA-A00N-01 X 24006374 24006374 G A KLHL15 Silent p.F493F 0.36 TCGA-AA-A00N-01 X 27840332 27840332 C A MAGEB10 Missense_Mutation p.F303L 0.50 deleterious(0.05) benign(0.279) TCGA-AA-A00N-01 X 2825271 2825271 G A ARSD 3'UTR 0.66 TCGA-AA-A00N-01 X 30578257 30578257 C T CXorf21 Silent p.E72E 0.06 TCGA-AA-A00N-01 X 30870905 30870905 G A TAB3 Missense_Mutation p.A567V 0.32 tolerated(0.31) benign(0.049) TCGA-AA-A00N-01 X 31697544 31697544 T G DMD Missense_Mutation p.K2607T 0.10 possibly_damaging(0.607) TCGA-AA-A00N-01 X 31947811 31947811 C A DMD Nonsense_Mutation p.E2272* 0.09 TCGA-AA-A00N-01 X 3242450 3242450 G T MXRA5 Missense_Mutation p.L426I 0.35 tolerated(0.11) benign(0.002) TCGA-AA-A00N-01 X 32456468 32456468 T G DMD Missense_Mutation p.N1321H 0.50 probably_damaging(0.965) TCGA-AA-A00N-01 X 35821753 35821753 T G MAGEB16 3'UTR 0.36 TCGA-AA-A00N-01 X 35974224 35974224 G A CXorf22 Missense_Mutation p.E441K 0.50 tolerated(0.77) benign(0.001) TCGA-AA-A00N-01 X 36083781 36083781 A G CHDC2 5'UTR 0.07 TCGA-AA-A00N-01 X 36103515 36103515 G A CHDC2 Silent p.K167K 0.09 TCGA-AA-A00N-01 X 37642819 37642819 G A CYBB Missense_Mutation p.R73Q 0.53 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 X 37699643 37699643 G T DYNLT3 3'UTR 0.44 TCGA-AA-A00N-01 X 38033499 38033499 C T SRPX Missense_Mutation p.R88H 0.10 tolerated(0.14) benign(0.025) TCGA-AA-A00N-01 X 38229107 38229107 G A OTC Missense_Mutation p.R92Q 0.48 deleterious(0) possibly_damaging(0.904) TCGA-AA-A00N-01 X 40498288 40498288 G A CXorf38 Silent p.F148F 0.44 TCGA-AA-A00N-01 X 41045782 41045782 A G USP9X Missense_Mutation p.T1191A 0.15 tolerated(0.69) possibly_damaging(0.502) TCGA-AA-A00N-01 X 41047291 41047291 A C USP9X Missense_Mutation p.K1244T 0.08 deleterious(0.02) probably_damaging(0.968) TCGA-AA-A00N-01 X 41555137 41555137 G A GPR34 Missense_Mutation p.R84H 0.54 tolerated(0.18) benign(0.038) TCGA-AA-A00N-01 X 41555827 41555827 T C GPR34 Missense_Mutation p.V314A 0.36 deleterious(0.03) benign(0.021) TCGA-AA-A00N-01 X 41598677 41598677 C T CASK Missense_Mutation p.R130H 0.36 deleterious(0.03) probably_damaging(0.977) TCGA-AA-A00N-01 X 44088925 44088925 T G EFHC2 Missense_Mutation p.H574P 0.40 tolerated(0.06) benign(0.013) TCGA-AA-A00N-01 X 44401266 44401266 A C FUNDC1 Missense_Mutation p.F37C 0.32 deleterious(0) probably_damaging(0.962) TCGA-AA-A00N-01 X 45016993 45016993 C T CXorf36 Silent p.T213T 0.14 TCGA-AA-A00N-01 X 46359848 46359848 T G ZNF674 Missense_Mutation p.K392N 0.31 deleterious(0) possibly_damaging(0.598) TCGA-AA-A00N-01 X 46472753 46472753 G A SLC9A7 Nonsense_Mutation p.R633* 0.39 TCGA-AA-A00N-01 X 47064874 47064874 G A UBA1 Intron 0.07 TCGA-AA-A00N-01 X 47230039 47230039 C T ZNF157 5'UTR 0.05 TCGA-AA-A00N-01 X 48826006 48826006 C T KCND1 Missense_Mutation p.E225K 0.27 tolerated(0.06) benign(0.227) TCGA-AA-A00N-01 X 49084773 49084773 G A CACNA1F Silent p.F318F 0.45 TCGA-AA-A00N-01 X 49105107 49105107 G A CCDC22 Missense_Mutation p.R448Q 0.07 tolerated(0.08) probably_damaging(0.971) TCGA-AA-A00N-01 X 49142350 49142350 A C PPP1R3F Missense_Mutation p.S400R 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.802) TCGA-AA-A00N-01 X 49646760 49646760 C T USP27X 3'UTR 0.40 TCGA-AA-A00N-01 X 49834628 49834628 T C CLCN5 Silent p.D86D 0.46 TCGA-AA-A00N-01 X 49851015 49851015 T G CLCN5 Missense_Mutation p.W349G 0.09 deleterious(0) possibly_damaging(0.72) TCGA-AA-A00N-01 X 50053059 50053059 G A CCNB3 Silent p.T630T 0.51 TCGA-AA-A00N-01 X 50213091 50213091 G A DGKK RNA 0.10 TCGA-AA-A00N-01 X 50350500 50350500 A C SHROOM4 Missense_Mutation p.D1214E 0.43 tolerated(0.2) benign(0.009) TCGA-AA-A00N-01 X 52825467 52825467 C T SPANXN5 3'UTR 0.49 TCGA-AA-A00N-01 X 52825638 52825638 C T SPANXN5 Missense_Mutation p.E37K 0.49 tolerated(0.18) benign(0.032) TCGA-AA-A00N-01 X 53610812 53610812 G A HUWE1 Silent p.I1742I 0.36 TCGA-AA-A00N-01 X 54011660 54011660 G A PHF8 Silent p.T746T 0.39 TCGA-AA-A00N-01 X 54099421 54099421 A C FAM120C 3'UTR 0.10 TCGA-AA-A00N-01 X 54275455 54275455 C T WNK3 Missense_Mutation p.R1109Q 0.34 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A00N-01 X 54496653 54496653 G A FGD1 Silent p.F299F 0.06 TCGA-AA-A00N-01 X 54800557 54800557 A G ITIH6 Missense_Mutation p.V287A 0.39 deleterious(0.01) probably_damaging(0.944) TCGA-AA-A00N-01 X 54838051 54838051 G A MAGED2 Missense_Mutation p.E319K 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A00N-01 X 54954151 54954151 C A TRO Missense_Mutation p.F605L 0.51 deleterious(0.04) unknown(0) TCGA-AA-A00N-01 X 55479212 55479212 C T MAGEH1 Silent p.I135I 0.09 TCGA-AA-A00N-01 X 55479689 55479689 A G MAGEH1 3'UTR 0.38 TCGA-AA-A00N-01 X 55650173 55650173 T G FOXR2 Missense_Mutation p.F10C 0.10 deleterious(0) probably_damaging(0.976) TCGA-AA-A00N-01 X 56591458 56591458 G A UBQLN2 Silent p.Q384Q 0.41 TCGA-AA-A00N-01 X 56593357 56593357 A T UBQLN2 3'UTR 0.40 TCGA-AA-A00N-01 X 5811554 5811554 C T NLGN4X Silent p.T585T 0.06 TCGA-AA-A00N-01 X 65408280 65408280 G A HEPH Silent p.E289E 0.09 TCGA-AA-A00N-01 X 65408345 65408345 A C HEPH Missense_Mutation p.K311T 0.35 tolerated(0.11) benign(0.424) TCGA-AA-A00N-01 X 65819936 65819936 C A EDA2R Missense_Mutation p.E173D 0.40 tolerated(0.61) benign(0.001) TCGA-AA-A00N-01 X 67943959 67943959 C A STARD8 Missense_Mutation p.L1064I 0.52 deleterious(0.01) possibly_damaging(0.667) TCGA-AA-A00N-01 X 69269719 69269719 A G AWAT2 Missense_Mutation p.S22P 0.42 tolerated(0.31) benign(0) TCGA-AA-A00N-01 X 69282602 69282602 C T OTUD6A Silent p.V76V 0.60 TCGA-AA-A00N-01 X 69479140 69479140 C T P2RY4 Missense_Mutation p.R112H 0.50 deleterious(0) probably_damaging(0.95) TCGA-AA-A00N-01 X 69623881 69623881 G T KIF4A Missense_Mutation p.E929D 0.15 tolerated(0.1) possibly_damaging(0.69) TCGA-AA-A00N-01 X 69652907 69652907 A G GDPD2 Missense_Mutation p.T582A 0.58 deleterious(0) possibly_damaging(0.804) TCGA-AA-A00N-01 X 69712393 69712393 C T DLG3 Nonsense_Mutation p.R574* 0.42 TCGA-AA-A00N-01 X 70093094 70093094 T G TEX11 Missense_Mutation p.N90H 0.60 deleterious(0.01) possibly_damaging(0.535) TCGA-AA-A00N-01 X 70147187 70147187 A G SLC7A3 Missense_Mutation p.S411P 0.40 deleterious(0) probably_damaging(0.991) TCGA-AA-A00N-01 X 70147722 70147722 C A SLC7A3 Missense_Mutation p.E323D 0.12 tolerated(0.37) benign(0.151) TCGA-AA-A00N-01 X 70147797 70147797 C T SLC7A3 Silent p.A298A 0.34 TCGA-AA-A00N-01 X 70148340 70148340 C T SLC7A3 Missense_Mutation p.E225K 0.15 tolerated(1) benign(0.001) TCGA-AA-A00N-01 X 70324215 70324215 C T CXorf65 Missense_Mutation p.R120Q 0.10 tolerated(0.13) possibly_damaging(0.706) TCGA-AA-A00N-01 X 70444717 70444717 C T GJB1 3'UTR 0.40 TCGA-AA-A00N-01 X 70608156 70608156 A C TAF1 Missense_Mutation p.K853Q 0.10 deleterious(0.04) possibly_damaging(0.588) TCGA-AA-A00N-01 X 70618466 70618466 G A TAF1 Missense_Mutation p.R1242Q 0.36 deleterious(0.04) benign(0.056) TCGA-AA-A00N-01 X 7171331 7171331 G A STS Missense_Mutation p.D36N 0.39 deleterious(0.01) probably_damaging(1) TCGA-AA-A00N-01 X 71825176 71825176 A G PHKA1 Silent p.I920I 0.50 TCGA-AA-A00N-01 X 71825181 71825181 G A PHKA1 Nonsense_Mutation p.R919* 0.52 TCGA-AA-A00N-01 X 72297678 72297678 G A PABPC1L2A 3'UTR 0.36 TCGA-AA-A00N-01 X 73960875 73960875 A G KIAA2022 Missense_Mutation p.S1173P 0.51 tolerated(0.27) benign(0.008) TCGA-AA-A00N-01 X 74290312 74290312 A C ABCB7 Missense_Mutation p.F419C 0.48 deleterious(0) probably_damaging(0.997) TCGA-AA-A00N-01 X 76776309 76776309 C T ATRX Missense_Mutation p.R2386Q 0.37 possibly_damaging(0.751) TCGA-AA-A00N-01 X 76812955 76812955 C A ATRX Missense_Mutation p.K2222N 0.10 benign(0.056) TCGA-AA-A00N-01 X 76938933 76938933 A G ATRX Silent p.C605C 0.31 TCGA-AA-A00N-01 X 77528356 77528356 G T CYSLTR1 Missense_Mutation p.F296L 0.08 deleterious(0.04) benign(0.302) TCGA-AA-A00N-01 X 78011052 78011052 G A LPAR4 Missense_Mutation p.R229K 0.56 tolerated(0.09) benign(0.326) TCGA-AA-A00N-01 X 78216809 78216809 T G P2RY10 Missense_Mutation p.I264M 0.52 tolerated(0.22) possibly_damaging(0.482) TCGA-AA-A00N-01 X 79286362 79286362 T C TBX22 Missense_Mutation p.S439P 0.45 tolerated(0.09) benign(0.059) TCGA-AA-A00N-01 X 79699825 79699825 A C FAM46D 3'UTR 0.10 TCGA-AA-A00N-01 X 83724417 83724417 A G HDX Missense_Mutation p.V105A 0.07 deleterious(0) benign(0.106) TCGA-AA-A00N-01 X 84561224 84561224 C T POF1B Missense_Mutation p.R427H 0.52 tolerated(0.1) benign(0.006) TCGA-AA-A00N-01 X 86919877 86919877 G A KLHL4 Missense_Mutation p.G680E 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A00N-01 X 9000419 9000419 C T FAM9B Missense_Mutation p.E38K 0.46 tolerated(0.73) probably_damaging(0.956) TCGA-AA-A00N-01 X 91456392 91456392 C T PCDH11X Nonsense_Mutation p.R1018* 0.34 TCGA-AA-A00N-01 X 91873589 91873589 C A PCDH11X Missense_Mutation p.H1232N 0.38 tolerated_low_confidence(0.3) benign(0.007) TCGA-AA-A00N-01 X 92926861 92926861 G A NAP1L3 Silent p.I481I 0.05 TCGA-AA-A00N-01 X 92927282 92927282 G A NAP1L3 Missense_Mutation p.S341L 0.38 tolerated(0.06) possibly_damaging(0.857) TCGA-AA-A00N-01 X 92928019 92928019 A C NAP1L3 Missense_Mutation p.N95K 0.12 tolerated(0.65) benign(0.01) TCGA-AA-A00N-01 X 95990756 95990756 G T DIAPH2 Splice_Site p.X45_splice 0.41 TCGA-AA-A00N-01 X 96139865 96139865 G A RPA4 Missense_Mutation p.E186K 0.47 tolerated(0.66) benign(0.005) TCGA-AA-A00N-01 X 96192338 96192338 G A DIAPH2 Missense_Mutation p.R399Q 0.35 deleterious(0) unknown(0) TCGA-AA-A00N-01 X 96200545 96200545 G A DIAPH2 Silent p.A488A 0.06 TCGA-AA-A00N-01 X 99890690 99890690 C T TSPAN6 Silent p.E47E 0.35 TCGA-AA-A00N-01 Y 14837103 14837103 C A USP9Y Missense_Mutation p.S128Y 0.07 deleterious(0) probably_damaging(0.995) TCGA-AA-A00N-01 Y 14952971 14952971 A G USP9Y Missense_Mutation p.T2042A 0.63 tolerated(0.89) benign(0) TCGA-AA-A00N-01 Y 15417398 15417398 T C UTY Missense_Mutation p.K1052R 0.10 deleterious(0) probably_damaging(0.911) TCGA-AA-A00N-01 Y 15582094 15582094 C T UTY Missense_Mutation p.E78K 0.50 deleterious(0.01) benign(0.205) TCGA-AA-A00N-01 Y 16733906 16733906 G A NLGN4Y 5'UTR 0.56 TCGA-AA-A00N-01 Y 4972468 4972468 A C PCDH11Y 3'UTR 0.08 TCGA-AA-A00N-01 Y 6736234 6736234 C T AMELY Silent p.Q139Q 0.11 TCGA-AA-A010-01 10 100481571 100481571 G A HPSE2 Missense_Mutation p.R267W 0.64 tolerated(0.07) probably_damaging(1) TCGA-AA-A010-01 10 100995472 100995472 C T HPSE2 Missense_Mutation p.A30T 0.34 deleterious(0.01) benign(0.049) TCGA-AA-A010-01 10 101090307 101090307 T C CNNM1 Missense_Mutation p.I388T 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-AA-A010-01 10 101157386 101157386 C T GOT1 Missense_Mutation p.R387Q 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 101165896 101165896 C T GOT1 Missense_Mutation p.E179K 0.30 tolerated(0.69) benign(0.003) TCGA-AA-A010-01 10 101292977 101292977 C T NKX2-3 Missense_Mutation p.A30V 0.39 tolerated(0.07) benign(0.045) TCGA-AA-A010-01 10 101567189 101567189 A C ABCC2 Missense_Mutation p.N527H 0.32 deleterious(0.03) benign(0.396) TCGA-AA-A010-01 10 101590552 101590552 G A ABCC2 Missense_Mutation p.E943K 0.36 tolerated(0.57) benign(0.002) TCGA-AA-A010-01 10 101643936 101643936 G A DNMBP Missense_Mutation p.R1277W 0.36 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 10 101716911 101716911 C T DNMBP Missense_Mutation p.R107Q 0.41 tolerated(0.05) possibly_damaging(0.874) TCGA-AA-A010-01 10 101959770 101959770 G A CHUK Missense_Mutation p.R563C 0.35 deleterious(0) possibly_damaging(0.614) TCGA-AA-A010-01 10 101978815 101978815 T G CHUK Missense_Mutation p.E213D 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A010-01 10 101997810 101997810 C A CWF19L1 Missense_Mutation p.R408I 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 102051171 102051171 C T PKD2L1 Missense_Mutation p.E632K 0.43 deleterious(0.05) benign(0.011) TCGA-AA-A010-01 10 102265719 102265719 C T SEC31B Intron 0.33 TCGA-AA-A010-01 10 102509546 102509546 C T PAX2 Silent p.N29N 0.33 TCGA-AA-A010-01 10 102677022 102677022 G T FAM178A Missense_Mutation p.D294Y 0.34 deleterious(0) possibly_damaging(0.898) TCGA-AA-A010-01 10 102684237 102684237 T G FAM178A Missense_Mutation p.N493K 0.33 tolerated(0.28) benign(0.156) TCGA-AA-A010-01 10 102738865 102738865 C A SEMA4G Missense_Mutation p.L274M 0.36 tolerated(0.2) benign(0.315) TCGA-AA-A010-01 10 102740964 102740964 C A SEMA4G Silent p.G561G 0.45 TCGA-AA-A010-01 10 102749489 102749489 C T C10orf2 Silent p.F444F 0.38 TCGA-AA-A010-01 10 102777925 102777925 G A PDZD7 Missense_Mutation p.R485C 0.34 tolerated_low_confidence(0.07) benign(0.001) TCGA-AA-A010-01 10 102849912 102849912 T C TLX1NB 5'UTR 0.31 TCGA-AA-A010-01 10 102850355 102850355 T C TLX1NB 5'UTR 0.38 TCGA-AA-A010-01 10 103543034 103543034 G T NPM3 Missense_Mutation p.F38L 0.31 tolerated(1) benign(0.003) TCGA-AA-A010-01 10 103546093 103546093 G A MGEA5 3'UTR 0.44 TCGA-AA-A010-01 10 103587701 103587701 G A KCNIP2 Missense_Mutation p.T231M 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-AA-A010-01 10 103607300 103607300 G T C10orf76 Missense_Mutation p.F685L 0.34 tolerated(0.32) benign(0.013) TCGA-AA-A010-01 10 103761789 103761789 C T C10orf76 Silent p.Q363Q 0.23 TCGA-AA-A010-01 10 103898411 103898411 G A PPRC1 Silent p.S126S 0.35 TCGA-AA-A010-01 10 103900553 103900553 G A PPRC1 Missense_Mutation p.R763H 0.27 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AA-A010-01 10 104156056 104156056 C A NFKB2 Missense_Mutation p.S23Y 0.34 tolerated(0.44) benign(0.025) TCGA-AA-A010-01 10 104174841 104174841 G A PSD Silent p.I301I 0.35 TCGA-AA-A010-01 10 104179846 104179846 G T FBXL15 5'UTR 0.45 TCGA-AA-A010-01 10 104590500 104590500 G A CYP17A1 Missense_Mutation p.R496C 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 104597079 104597079 A G CYP17A1 Missense_Mutation p.Y14H 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-AA-A010-01 10 104620149 104620149 G T C10orf32 Missense_Mutation p.D68Y 0.50 deleterious(0.02) possibly_damaging(0.509) TCGA-AA-A010-01 10 104861043 104861043 G A NT5C2 Nonsense_Mutation p.R144* 0.37 TCGA-AA-A010-01 10 105048429 105048429 C T INA 3'UTR 0.30 TCGA-AA-A010-01 10 105173749 105173749 C A PDCD11 Missense_Mutation p.N404K 0.54 tolerated(1) benign(0.001) TCGA-AA-A010-01 10 105350119 105350119 G A NEURL1 Missense_Mutation p.R572H 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 10 105361585 105361585 C T SH3PXD2A Silent p.E1102E 0.42 TCGA-AA-A010-01 10 105762222 105762222 A C SLK Missense_Mutation p.K429T 0.41 tolerated(0.24) benign(0.131) TCGA-AA-A010-01 10 105781450 105781450 G A SLK Missense_Mutation p.E1174K 0.38 tolerated(0.06) benign(0.253) TCGA-AA-A010-01 10 105809227 105809227 C T COL17A1 Missense_Mutation p.E723K 0.32 probably_damaging(0.955) TCGA-AA-A010-01 10 105938815 105938815 T G WDR96 Missense_Mutation p.K811T 0.41 deleterious(0.01) possibly_damaging(0.521) TCGA-AA-A010-01 10 1060223 1060223 C A GTPBP4 Missense_Mutation p.L527I 0.40 tolerated(0.1) possibly_damaging(0.539) TCGA-AA-A010-01 10 106075177 106075177 G A ITPRIP Silent p.F211F 0.38 TCGA-AA-A010-01 10 106152089 106152089 G T CCDC147 Missense_Mutation p.Q488H 0.25 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 10 106209949 106209949 G T CCDC147 Nonsense_Mutation p.E833* 0.33 TCGA-AA-A010-01 10 107022143 107022143 G T SORCS3 Missense_Mutation p.E1166D 0.55 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 10 108469039 108469039 A C SORCS1 Missense_Mutation p.F362C 0.34 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 10 1090115 1090115 A C IDI1 Intron 0.36 TCGA-AA-A010-01 10 112359530 112359530 G T SMC3 Missense_Mutation p.R796I 0.27 deleterious(0.03) benign(0.115) TCGA-AA-A010-01 10 112657863 112657863 A G PDCD4 3'UTR 0.39 TCGA-AA-A010-01 10 112767375 112767375 G T SHOC2 Missense_Mutation p.K416N 0.28 tolerated(0.18) benign(0.011) TCGA-AA-A010-01 10 112840164 112840164 A C ADRA2A 3'UTR 0.32 TCGA-AA-A010-01 10 113928244 113928244 C A GPAM Missense_Mutation p.E311D 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 10 113928640 113928640 C A GPAM Missense_Mutation p.D289Y 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 114044301 114044301 C A TECTB Missense_Mutation p.L29I 0.34 tolerated(0.71) benign(0.057) TCGA-AA-A010-01 10 114170022 114170022 G T ACSL5 Intron 0.47 TCGA-AA-A010-01 10 114925318 114925318 A C TCF7L2 Missense_Mutation p.K466Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 10 115337802 115337802 C T HABP2 Missense_Mutation p.P156S 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A010-01 10 115349557 115349557 C A NRAP Splice_Site p.X1653_splice 0.30 TCGA-AA-A010-01 10 115922843 115922843 C T C10orf118 Missense_Mutation p.R62Q 0.38 tolerated_low_confidence(0.67) benign(0.001) TCGA-AA-A010-01 10 115922851 115922851 A G C10orf118 Silent p.H59H 0.35 TCGA-AA-A010-01 10 115986982 115986982 C T TDRD1 Silent p.V1109V 0.42 TCGA-AA-A010-01 10 116590682 116590682 G T FAM160B1 Missense_Mutation p.E39D 0.40 tolerated(0.08) benign(0.031) TCGA-AA-A010-01 10 116698249 116698249 G A TRUB1 Silent p.G79G 0.46 TCGA-AA-A010-01 10 117704364 117704364 G A ATRNL1 3'UTR 0.48 TCGA-AA-A010-01 10 118305632 118305632 C A PNLIP Missense_Mutation p.L10M 0.36 deleterious(0) benign(0.399) TCGA-AA-A010-01 10 118307930 118307930 C A PNLIP Missense_Mutation p.T87N 0.45 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 10 118307932 118307932 C T PNLIP Missense_Mutation p.R88C 0.34 deleterious(0.01) probably_damaging(0.975) TCGA-AA-A010-01 10 118351968 118351968 A T PNLIPRP1 Missense_Mutation p.N82I 0.29 deleterious(0) probably_damaging(0.981) TCGA-AA-A010-01 10 118360679 118360679 C A PNLIPRP1 Missense_Mutation p.F343L 0.33 tolerated(0.2) benign(0.157) TCGA-AA-A010-01 10 118891595 118891595 C T VAX1 3'Flank 0.34 TCGA-AA-A010-01 10 118893444 118893444 G A VAX1 3'UTR 0.35 TCGA-AA-A010-01 10 118897576 118897576 A G VAX1 5'Flank 0.41 TCGA-AA-A010-01 10 118969410 118969410 C T KCNK18 Missense_Mutation p.S252L 0.35 tolerated(0.05) benign(0.433) TCGA-AA-A010-01 10 119013902 119013902 C A SLC18A2 Intron 0.34 TCGA-AA-A010-01 10 119305209 119305209 G A EMX2 Missense_Mutation p.R158Q 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 119805348 119805348 A C RAB11FIP2 Missense_Mutation p.F109L 0.35 tolerated(0.06) probably_damaging(0.952) TCGA-AA-A010-01 10 120353832 120353832 C T PRLHR Missense_Mutation p.D309N 0.30 tolerated(0.36) benign(0.012) TCGA-AA-A010-01 10 120792068 120792068 C A NANOS1 3'UTR 0.41 TCGA-AA-A010-01 10 120795658 120795658 C A EIF3A Nonsense_Mutation p.E1348* 0.37 TCGA-AA-A010-01 10 120801652 120801652 C A EIF3A Missense_Mutation p.R1127I 0.33 deleterious_low_confidence(0) benign(0.308) TCGA-AA-A010-01 10 12126658 12126658 G T DHTKD1 Missense_Mutation p.D144Y 0.35 deleterious(0.01) benign(0.092) TCGA-AA-A010-01 10 121342114 121342114 C T TIAL1 Missense_Mutation p.D46N 0.31 tolerated(0.16) benign(0.063) TCGA-AA-A010-01 10 121436434 121436434 G A BAG3 Silent p.E456E 0.46 TCGA-AA-A010-01 10 121541178 121541178 G T INPP5F Missense_Mutation p.Q70H 0.38 deleterious(0.03) possibly_damaging(0.894) TCGA-AA-A010-01 10 121551492 121551492 A T INPP5F Missense_Mutation p.N186Y 0.37 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 10 121571328 121571328 G T INPP5F Nonsense_Mutation p.E583* 0.29 TCGA-AA-A010-01 10 121616852 121616852 C A MCMBP Nonsense_Mutation p.E143* 0.39 TCGA-AA-A010-01 10 121618678 121618678 C T MCMBP Missense_Mutation p.E54K 0.43 deleterious(0.02) benign(0.254) TCGA-AA-A010-01 10 121658206 121658206 C T SEC23IP Missense_Mutation p.A144V 0.35 tolerated(0.09) benign(0.005) TCGA-AA-A010-01 10 122643379 122643379 C T WDR11 Silent p.N609N 0.29 TCGA-AA-A010-01 10 122650314 122650314 C A WDR11 Silent p.I810I 0.31 TCGA-AA-A010-01 10 1229013 1229013 G A ADARB2 3'UTR 0.42 TCGA-AA-A010-01 10 123239219 123239219 C A FGFR2 3'Flank 0.46 TCGA-AA-A010-01 10 123659467 123659467 C A ATE1 Intron 0.39 TCGA-AA-A010-01 10 123842196 123842196 G A TACC2 Missense_Mutation p.A61T 0.39 benign(0.002) TCGA-AA-A010-01 10 124248963 124248963 C T HTRA1 Missense_Mutation p.P200S 0.34 tolerated(0.07) benign(0.003) TCGA-AA-A010-01 10 124268215 124268215 G T HTRA1 Missense_Mutation p.G350V 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 10 124339172 124339172 G A DMBT1 Missense_Mutation p.G253D 0.36 deleterious(0.02) probably_damaging(1) TCGA-AA-A010-01 10 124339268 124339268 G A DMBT1 Missense_Mutation p.G285E 0.39 tolerated(0.2) probably_damaging(1) TCGA-AA-A010-01 10 1246045 1246045 G A ADARB2 Silent p.F575F 0.35 TCGA-AA-A010-01 10 124749749 124749749 G A PSTK 3'UTR 0.26 TCGA-AA-A010-01 10 125804370 125804370 G T CHST15 Missense_Mutation p.F204L 0.41 tolerated(0.18) benign(0.009) TCGA-AA-A010-01 10 126454119 126454119 T G METTL10 Missense_Mutation p.K153T 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 126517437 126517437 G T FAM175B Nonsense_Mutation p.E191* 0.37 TCGA-AA-A010-01 10 127344551 127344551 C A TEX36 Missense_Mutation p.R160I 0.38 deleterious(0.03) benign(0.277) TCGA-AA-A010-01 10 127967512 127967512 C A ADAM12 Nonsense_Mutation p.E78* 0.38 TCGA-AA-A010-01 10 128114614 128114614 T G C10orf90 Missense_Mutation p.Q669H 0.36 deleterious(0) probably_damaging(0.964) TCGA-AA-A010-01 10 128118370 128118370 A G C10orf90 Silent p.H649H 0.33 TCGA-AA-A010-01 10 128193034 128193034 C T C10orf90 Silent p.P245P 0.47 TCGA-AA-A010-01 10 128193313 128193313 G A C10orf90 Silent p.R152R 0.37 TCGA-AA-A010-01 10 128798493 128798493 C T DOCK1 Missense_Mutation p.R303C 0.44 deleterious(0) possibly_damaging(0.689) TCGA-AA-A010-01 10 129209187 129209187 C T DOCK1 Missense_Mutation p.A1455V 0.40 deleterious(0.03) benign(0.006) TCGA-AA-A010-01 10 129535810 129535810 C A FOXI2 Silent p.L91L 0.36 TCGA-AA-A010-01 10 129881110 129881110 C A PTPRE Missense_Mutation p.F681L 0.48 tolerated(0.12) probably_damaging(0.973) TCGA-AA-A010-01 10 129902740 129902740 G T MKI67 Missense_Mutation p.T2455N 0.39 tolerated(0.08) benign(0.135) TCGA-AA-A010-01 10 13167530 13167530 G A OPTN Missense_Mutation p.E371K 0.36 deleterious(0.01) possibly_damaging(0.896) TCGA-AA-A010-01 10 131761721 131761721 G T EBF3 Missense_Mutation p.F67L 0.36 deleterious(0) probably_damaging(0.975) TCGA-AA-A010-01 10 131761901 131761901 C A EBF3 Missense_Mutation p.Q44H 0.50 deleterious_low_confidence(0.04) benign(0.17) TCGA-AA-A010-01 10 131977645 131977645 G A GLRX3 Missense_Mutation p.G333R 0.34 deleterious(0.02) benign(0.072) TCGA-AA-A010-01 10 13214443 13214443 A G MCM10 Silent p.K139K 0.30 TCGA-AA-A010-01 10 13237243 13237243 C A MCM10 Missense_Mutation p.L651M 0.53 tolerated(0.17) probably_damaging(0.99) TCGA-AA-A010-01 10 13271630 13271630 G A UCMA Silent p.F100F 0.43 TCGA-AA-A010-01 10 132944831 132944831 C T TCERG1L Missense_Mutation p.R376H 0.40 deleterious(0.01) possibly_damaging(0.699) TCGA-AA-A010-01 10 133106655 133106655 C A TCERG1L Splice_Site p.X164_splice 0.44 TCGA-AA-A010-01 10 13320203 13320203 G T PHYH 3'UTR 0.31 TCGA-AA-A010-01 10 133761220 133761220 G A PPP2R2D Missense_Mutation p.R305H 0.39 deleterious(0.02) probably_damaging(0.981) TCGA-AA-A010-01 10 133948592 133948592 C T JAKMIP3 Silent p.I299I 0.35 TCGA-AA-A010-01 10 133949508 133949508 C T JAKMIP3 Silent p.N348N 0.37 TCGA-AA-A010-01 10 134041593 134041593 C T STK32C Missense_Mutation p.A120T 0.40 deleterious(0.04) probably_damaging(0.995) TCGA-AA-A010-01 10 134463923 134463923 G T INPP5A Nonsense_Mutation p.E74* 0.38 TCGA-AA-A010-01 10 134598932 134598932 T G NKX6-2 Missense_Mutation p.K144T 0.31 tolerated(0.06) benign(0.168) TCGA-AA-A010-01 10 134750520 134750520 C A TTC40 Nonsense_Mutation p.E234* 0.29 TCGA-AA-A010-01 10 135020512 135020512 C A KNDC1 Intron 0.42 TCGA-AA-A010-01 10 135061044 135061044 C T MIR202HG Intron 0.45 TCGA-AA-A010-01 10 135163665 135163665 G T PRAP1 Missense_Mutation p.K25N 0.35 deleterious(0.01) possibly_damaging(0.687) TCGA-AA-A010-01 10 135178224 135178224 C A ECHS1 Nonsense_Mutation p.E249* 0.38 TCGA-AA-A010-01 10 135345724 135345724 A C CYP2E1 Missense_Mutation p.K195T 0.34 tolerated(0.49) benign(0.003) TCGA-AA-A010-01 10 13542064 13542064 T G BEND7 Missense_Mutation p.E2D 0.40 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AA-A010-01 10 135439029 135439029 G T FRG2B Silent p.I137I 0.29 TCGA-AA-A010-01 10 13642302 13642302 T G PRPF18 Missense_Mutation p.L68R 0.30 tolerated(0.55) benign(0.303) TCGA-AA-A010-01 10 13672344 13672344 C A PRPF18 3'UTR 0.36 TCGA-AA-A010-01 10 13735997 13735997 C T FRMD4A Missense_Mutation p.D340N 0.30 tolerated(0.06) probably_damaging(0.962) TCGA-AA-A010-01 10 13803657 13803657 C A FRMD4A Missense_Mutation p.D152Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 10 14862125 14862125 G A CDNF Missense_Mutation p.R140W 0.42 tolerated(0.13) benign(0.001) TCGA-AA-A010-01 10 15008438 15008438 G T MEIG1 Splice_Site 0.35 TCGA-AA-A010-01 10 15658555 15658555 A - ITGA8 Frame_Shift_Del p.L468* 0.29 TCGA-AA-A010-01 10 15824206 15824206 G T FAM188A Missense_Mutation p.S379Y 0.33 tolerated(0.1) possibly_damaging(0.496) TCGA-AA-A010-01 10 16635377 16635377 G A RSU1 3'UTR 0.38 TCGA-AA-A010-01 10 16911652 16911652 G T CUBN Missense_Mutation p.S3146Y 0.37 tolerated(0.14) benign(0.219) TCGA-AA-A010-01 10 16948257 16948257 A C CUBN Missense_Mutation p.D2619E 0.33 tolerated(0.17) benign(0.012) TCGA-AA-A010-01 10 16996542 16996542 G A CUBN Silent p.Y1567Y 0.52 TCGA-AA-A010-01 10 17126451 17126451 C T CUBN Missense_Mutation p.R707H 0.43 tolerated(0.59) benign(0) TCGA-AA-A010-01 10 17210875 17210875 C A TRDMT1 Missense_Mutation p.M72I 0.32 tolerated(0.19) benign(0.066) TCGA-AA-A010-01 10 17363213 17363213 G A ST8SIA6 Silent p.L287L 0.39 TCGA-AA-A010-01 10 17369070 17369070 C T ST8SIA6 Missense_Mutation p.G193E 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 17840551 17840551 G A TMEM236 3'UTR 0.79 TCGA-AA-A010-01 10 18270285 18270285 G T SLC39A12 Missense_Mutation p.K323N 0.38 tolerated(1) benign(0) TCGA-AA-A010-01 10 18429639 18429639 G A CACNB2 5'UTR 0.34 TCGA-AA-A010-01 10 18903474 18903474 C A NSUN6 Nonsense_Mutation p.E164* 0.49 TCGA-AA-A010-01 10 20506370 20506370 T C PLXDC2 Missense_Mutation p.C380R 0.32 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 10 21784354 21784354 T G CASC10 3'UTR 0.47 TCGA-AA-A010-01 10 21804851 21804851 T C SKIDA1 Missense_Mutation p.K634R 0.38 tolerated(0.19) unknown(0) TCGA-AA-A010-01 10 21959473 21959473 C A MLLT10 Silent p.V297V 0.36 TCGA-AA-A010-01 10 21962635 21962635 G T MLLT10 Nonsense_Mutation p.G470* 0.36 TCGA-AA-A010-01 10 22657425 22657425 G A SPAG6 Missense_Mutation p.R97H 0.32 deleterious(0.01) possibly_damaging(0.768) TCGA-AA-A010-01 10 22699984 22699984 C T SPAG6 Nonsense_Mutation p.R447* 0.29 TCGA-AA-A010-01 10 23003181 23003181 C T PIP4K2A Silent p.A25A 0.36 TCGA-AA-A010-01 10 23321817 23321817 G T ARMC3 Missense_Mutation p.K758N 0.30 tolerated(0.1) benign(0.219) TCGA-AA-A010-01 10 23321873 23321873 A C ARMC3 Missense_Mutation p.K777T 0.31 deleterious(0) possibly_damaging(0.854) TCGA-AA-A010-01 10 23326244 23326244 G A ARMC3 Missense_Mutation p.E819K 0.36 tolerated(0.2) benign(0.277) TCGA-AA-A010-01 10 23633747 23633747 C A C10orf67 5'UTR 0.43 TCGA-AA-A010-01 10 23730677 23730677 G T OTUD1 3'UTR 0.43 TCGA-AA-A010-01 10 24884715 24884715 C A ARHGAP21 Missense_Mutation p.D1215Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 10 25273711 25273711 C T ENKUR Missense_Mutation p.D240N 0.39 deleterious(0.02) benign(0.062) TCGA-AA-A010-01 10 25312249 25312249 C A THNSL1 Missense_Mutation p.L33I 0.43 deleterious_low_confidence(0.05) benign(0.146) TCGA-AA-A010-01 10 25312700 25312700 A C THNSL1 Missense_Mutation p.K183T 0.38 tolerated(0.38) benign(0.004) TCGA-AA-A010-01 10 25314378 25314378 C A THNSL1 Missense_Mutation p.F742L 0.34 deleterious_low_confidence(0.02) benign(0.009) TCGA-AA-A010-01 10 25314430 25314430 A C THNSL1 3'UTR 0.36 TCGA-AA-A010-01 10 25701363 25701363 C T GPR158 Silent p.F432F 0.46 TCGA-AA-A010-01 10 25861759 25861759 G A GPR158 Missense_Mutation p.D566N 0.36 tolerated(0.06) benign(0.43) TCGA-AA-A010-01 10 25886862 25886862 C T GPR158 Silent p.C769C 0.29 TCGA-AA-A010-01 10 26385322 26385322 T G MYO3A Missense_Mutation p.N525K 0.28 deleterious(0.01) possibly_damaging(0.798) TCGA-AA-A010-01 10 26463131 26463131 G A MYO3A Missense_Mutation p.R1313H 0.33 deleterious_low_confidence(0.04) benign(0) TCGA-AA-A010-01 10 27323987 27323987 G A ANKRD26 Missense_Mutation p.S1131F 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 10 27324210 27324210 C A ANKRD26 Missense_Mutation p.D1057Y 0.44 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 10 27443251 27443251 C T YME1L1 5'UTR 0.28 TCGA-AA-A010-01 10 27450082 27450082 T G MASTL Missense_Mutation p.F175C 0.37 deleterious(0.02) probably_damaging(1) TCGA-AA-A010-01 10 27536813 27536813 C A RP11-85G18.6 Intron 0.47 TCGA-AA-A010-01 10 27537971 27537971 A C RP11-85G18.6 Intron 0.34 TCGA-AA-A010-01 10 27538150 27538150 C T RP11-85G18.6 Intron 0.37 TCGA-AA-A010-01 10 27687466 27687466 G T PTCHD3 Silent p.V687V 0.30 TCGA-AA-A010-01 10 27702944 27702944 G A PTCHD3 Missense_Mutation p.S79L 0.48 tolerated(0.32) benign(0.017) TCGA-AA-A010-01 10 28284008 28284008 C T ARMC4 Missense_Mutation p.E22K 0.40 tolerated(0.05) possibly_damaging(0.691) TCGA-AA-A010-01 10 288048 288048 G A ZMYND11 Missense_Mutation p.D307N 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 10 28900725 28900725 G A WAC Silent p.P437P 0.38 TCGA-AA-A010-01 10 29782172 29782172 G A SVIL Silent p.F1330F 0.39 TCGA-AA-A010-01 10 30602524 30602524 C T MTPAP 3'UTR 0.38 TCGA-AA-A010-01 10 31610417 31610417 C T ZEB1 Intron 0.37 TCGA-AA-A010-01 10 31791292 31791292 C T ZEB1 Silent p.C113C 0.48 TCGA-AA-A010-01 10 32581518 32581518 G T EPC1 Missense_Mutation p.L241I 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A010-01 10 32854514 32854514 A C CCDC7 Missense_Mutation p.K388T 0.35 tolerated(0.06) probably_damaging(0.964) TCGA-AA-A010-01 10 33103318 33103318 A G C10ORF68 Missense_Mutation p.T311A 0.40 tolerated(0.76) benign(0.351) TCGA-AA-A010-01 10 33190516 33190516 C T ITGB1 Silent p.P793P 0.38 TCGA-AA-A010-01 10 33197317 33197317 T G ITGB1 Missense_Mutation p.K770N 0.33 deleterious(0) possibly_damaging(0.759) TCGA-AA-A010-01 10 33623290 33623290 G A NRP1 Silent p.L7L 0.26 TCGA-AA-A010-01 10 34400367 34400367 G A PARD3 Silent p.N1267N 0.33 TCGA-AA-A010-01 10 35327980 35327980 G A CUL2 Nonsense_Mutation p.R268* 0.38 TCGA-AA-A010-01 10 35464567 35464567 G A CREM Intron 0.33 TCGA-AA-A010-01 10 37419185 37419185 C T ANKRD30A Missense_Mutation p.A74V 0.47 deleterious(0) possibly_damaging(0.876) TCGA-AA-A010-01 10 37436300 37436300 T C ANKRD30A Silent p.S430S 0.36 TCGA-AA-A010-01 10 37508138 37508138 G A ANKRD30A Silent p.G1110G 0.38 TCGA-AA-A010-01 10 38306266 38306266 G T ZNF33A Nonsense_Mutation p.E68* 0.31 TCGA-AA-A010-01 10 38344413 38344413 C T ZNF33A Missense_Mutation p.S454L 0.37 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 10 38344642 38344642 T C ZNF33A Silent p.C530C 0.42 TCGA-AA-A010-01 10 38407733 38407733 A C ZNF37A Missense_Mutation p.N552H 0.41 tolerated(0.16) benign(0.151) TCGA-AA-A010-01 10 38647419 38647419 G A HSD17B7P2 RNA 0.33 TCGA-AA-A010-01 10 42907167 42907167 C A CCNYL2 RNA 0.33 TCGA-AA-A010-01 10 42928713 42928713 C T CCNYL2 RNA 0.33 TCGA-AA-A010-01 10 43016376 43016376 C A ZNF37BP RNA 0.39 TCGA-AA-A010-01 10 43089893 43089893 C T ZNF33B Missense_Mutation p.E169K 0.28 tolerated(0.42) benign(0.012) TCGA-AA-A010-01 10 43090003 43090003 G T ZNF33B Missense_Mutation p.S132Y 0.32 tolerated(1) benign(0.004) TCGA-AA-A010-01 10 43279898 43279898 C G BMS1 Missense_Mutation p.A19G 0.35 tolerated(0.1) benign(0) TCGA-AA-A010-01 10 43612162 43612162 C T RET Missense_Mutation p.A756V 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 43613834 43613834 G A RET Silent p.P766P 0.38 TCGA-AA-A010-01 10 44052537 44052537 G A ZNF239 Missense_Mutation p.R331C 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A010-01 10 44052858 44052858 G A ZNF239 Missense_Mutation p.L224F 0.38 tolerated(0.39) probably_damaging(0.93) TCGA-AA-A010-01 10 44139887 44139887 G A ZNF32 Nonsense_Mutation p.R145* 0.34 TCGA-AA-A010-01 10 45602546 45602546 G A RSU1P2 RNA 0.52 TCGA-AA-A010-01 10 45799154 45799154 G A OR13A1 Silent p.I239I 0.35 TCGA-AA-A010-01 10 45907676 45907676 G A ALOX5 Missense_Mutation p.D157N 0.47 tolerated(0.11) benign(0.378) TCGA-AA-A010-01 10 45953759 45953759 G T MARCH8 Silent p.I268I 0.41 TCGA-AA-A010-01 10 45956732 45956732 C T MARCH8 Missense_Mutation p.E124K 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 46143749 46143749 G A ZFAND4 Missense_Mutation p.R188C 0.53 tolerated_low_confidence(0.2) benign(0) TCGA-AA-A010-01 10 46146955 46146955 C A ZFAND4 Intron 0.34 TCGA-AA-A010-01 10 46248104 46248104 G T FAM21C Missense_Mutation p.G358C 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 10 46250413 46250413 G A FAM21C Missense_Mutation p.V424I 0.38 tolerated(0.43) benign(0.002) TCGA-AA-A010-01 10 46250532 46250532 C A FAM21C Missense_Mutation p.F463L 0.39 tolerated(0.35) probably_damaging(0.986) TCGA-AA-A010-01 10 46258858 46258858 C T FAM21C Missense_Mutation p.A553V 0.32 tolerated(0.5) benign(0.004) TCGA-AA-A010-01 10 46265057 46265057 C T FAM21C Missense_Mutation p.A677V 0.35 deleterious(0.01) benign(0.341) TCGA-AA-A010-01 10 46998879 46998879 C A GPRIN2 5'UTR 0.20 TCGA-AA-A010-01 10 46999788 46999788 T C GPRIN2 Missense_Mutation p.V303A 0.15 tolerated(1) benign(0) TCGA-AA-A010-01 10 48386038 48386038 C A RBP3 Splice_Site p.X1019_splice 0.38 TCGA-AA-A010-01 10 48388864 48388864 C T RBP3 Missense_Mutation p.A672T 0.36 tolerated(0.55) possibly_damaging(0.499) TCGA-AA-A010-01 10 48413871 48413871 G A GDF2 Missense_Mutation p.R333W 0.37 tolerated(0.08) benign(0.047) TCGA-AA-A010-01 10 48426758 48426758 C T GDF10 Missense_Mutation p.V417I 0.38 deleterious(0.02) possibly_damaging(0.876) TCGA-AA-A010-01 10 48428830 48428830 C T GDF10 Silent p.S352S 0.41 TCGA-AA-A010-01 10 49393632 49393632 G A FRMPD2 Missense_Mutation p.R775C 0.32 tolerated(1) benign(0) TCGA-AA-A010-01 10 49643110 49643110 C T MAPK8 3'UTR 0.37 TCGA-AA-A010-01 10 49917790 49917790 G T WDFY4 Missense_Mutation p.D5Y 0.27 tolerated_low_confidence(0.14) benign(0.002) TCGA-AA-A010-01 10 49951459 49951459 C T WDFY4 Silent p.S775S 0.32 TCGA-AA-A010-01 10 50028438 50028438 G A WDFY4 Missense_Mutation p.A1889T 0.42 tolerated(0.98) benign(0.002) TCGA-AA-A010-01 10 50038818 50038818 G T WDFY4 Missense_Mutation p.E2138D 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 10 50040681 50040681 G T WDFY4 Missense_Mutation p.W2197L 0.48 tolerated(0.51) benign(0.115) TCGA-AA-A010-01 10 50075376 50075376 G A WDFY4 Missense_Mutation p.D2244N 0.39 tolerated(0.68) benign(0.128) TCGA-AA-A010-01 10 5014445 5014445 C A AKR1C1 Nonsense_Mutation p.S208* 0.37 TCGA-AA-A010-01 10 5014497 5014497 A G AKR1C1 Silent p.E225E 0.42 TCGA-AA-A010-01 10 50190599 50190599 C A WDFY4 Missense_Mutation p.F3178L 0.35 deleterious(0.03) benign(0.071) TCGA-AA-A010-01 10 50340205 50340205 G A FAM170B Missense_Mutation p.A102V 0.32 tolerated(0.1) benign(0.067) TCGA-AA-A010-01 10 5037584 5037584 C T AKR1C2 Missense_Mutation p.R258H 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-AA-A010-01 10 5042584 5042584 C A AKR1C2 Intron 0.43 TCGA-AA-A010-01 10 50535047 50535047 T C C10orf71 3'UTR 0.35 TCGA-AA-A010-01 10 50681626 50681626 T C ERCC6 Missense_Mutation p.D869G 0.40 tolerated(0.27) benign(0.006) TCGA-AA-A010-01 10 50724326 50724326 G A ERCC6-PGBD3 Missense_Mutation p.R747C 0.34 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 10 50732131 50732131 C T ERCC6-PGBD3 Missense_Mutation p.V449M 0.38 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 10 50819671 50819671 C T SLC18A3 Silent p.A295A 0.52 TCGA-AA-A010-01 10 50819926 50819926 C T SLC18A3 Silent p.F380F 0.33 TCGA-AA-A010-01 10 50820179 50820179 G A SLC18A3 Missense_Mutation p.V465I 0.39 tolerated(0.07) benign(0.063) TCGA-AA-A010-01 10 50827877 50827877 T G CHAT Missense_Mutation p.I165S 0.41 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 10 51027437 51027437 G A PARG Silent p.V475V 0.37 TCGA-AA-A010-01 10 51065373 51065373 T C PARG Missense_Mutation p.N293D 0.41 tolerated(0.09) possibly_damaging(0.835) TCGA-AA-A010-01 10 51592611 51592611 G A TIMM23 Nonsense_Mutation p.R175* 0.37 TCGA-AA-A010-01 10 52071131 52071131 G T SGMS1 Silent p.L262L 0.31 TCGA-AA-A010-01 10 52087061 52087061 A C SGMS1 Missense_Mutation p.F215L 0.29 tolerated(0.58) benign(0.026) TCGA-AA-A010-01 10 52390766 52390766 T C RP11-50E11.3 RNA 0.32 TCGA-AA-A010-01 10 5247767 5247767 C T AKR1C4 Silent p.F139F 0.45 TCGA-AA-A010-01 10 5436206 5436206 C T TUBAL3 Silent p.T205T 0.36 TCGA-AA-A010-01 10 5436333 5436333 C T TUBAL3 Missense_Mutation p.R163K 0.42 tolerated_low_confidence(0.08) benign(0.005) TCGA-AA-A010-01 10 5488793 5488793 T C NET1 Intron 0.41 TCGA-AA-A010-01 10 55566310 55566310 A C PCDH15 3'UTR 0.52 TCGA-AA-A010-01 10 55566574 55566574 T G PCDH15 Missense_Mutation p.K1604T 0.40 tolerated_low_confidence(0.53) benign(0.015) TCGA-AA-A010-01 10 55568837 55568837 T C PCDH15 Missense_Mutation p.N592S 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 10 55581707 55581707 C A PCDH15 Nonsense_Mutation p.E1929* 0.36 TCGA-AA-A010-01 10 55582412 55582412 A T PCDH15 Missense_Mutation p.S1694T 0.30 tolerated_low_confidence(0.17) benign(0.027) TCGA-AA-A010-01 10 5568103 5568103 C A CALML3 3'UTR 0.32 TCGA-AA-A010-01 10 55755368 55755368 C A PCDH15 Intron 0.31 TCGA-AA-A010-01 10 55912989 55912989 G T PCDH15 Missense_Mutation p.A552D 0.41 tolerated(0.85) benign(0.009) TCGA-AA-A010-01 10 55996666 55996666 G A PCDH15 Missense_Mutation p.T301M 0.37 deleterious(0.03) probably_damaging(0.957) TCGA-AA-A010-01 10 5803317 5803317 G A FAM208B Missense_Mutation p.E2353K 0.26 deleterious(0) possibly_damaging(0.884) TCGA-AA-A010-01 10 5952926 5952926 C T FBXO18 Missense_Mutation p.A400V 0.36 deleterious(0.03) benign(0.168) TCGA-AA-A010-01 10 5969473 5969473 A C FBXO18 Missense_Mutation p.K984T 0.36 deleterious(0.01) possibly_damaging(0.662) TCGA-AA-A010-01 10 60128555 60128555 G T UBE2D1 3'UTR 0.56 TCGA-AA-A010-01 10 6061878 6061878 C T IL2RA Missense_Mutation p.E204K 0.41 tolerated(0.13) benign(0.032) TCGA-AA-A010-01 10 61718601 61718601 T A C10orf40 5'UTR 0.36 TCGA-AA-A010-01 10 61815483 61815483 G T ANK3 Missense_Mutation p.S4333Y 0.37 benign(0.172) TCGA-AA-A010-01 10 61829100 61829100 G T ANK3 Missense_Mutation p.L3847I 0.36 benign(0) TCGA-AA-A010-01 10 62634770 62634770 G A RHOBTB1 Missense_Mutation p.A586V 0.44 tolerated(0.15) benign(0.073) TCGA-AA-A010-01 10 63188735 63188735 G A TMEM26 Missense_Mutation p.A185V 0.44 deleterious(0.01) probably_damaging(0.971) TCGA-AA-A010-01 10 63809168 63809168 G A ARID5B Intron 0.34 TCGA-AA-A010-01 10 63852307 63852307 C T ARID5B Missense_Mutation p.R1029W 0.43 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 10 64565044 64565044 G A ADO Silent p.L75L 0.33 TCGA-AA-A010-01 10 64567356 64567356 C T ADO 3'UTR 0.28 TCGA-AA-A010-01 10 64573268 64573268 C T EGR2 Missense_Mutation p.R377H 0.33 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 10 64937579 64937579 G C JMJD1C Missense_Mutation p.D2374E 0.31 tolerated(1) benign(0.057) TCGA-AA-A010-01 10 68687134 68687134 C T LRRTM3 Missense_Mutation p.R154W 0.33 deleterious(0.04) benign(0.022) TCGA-AA-A010-01 10 68940074 68940074 C T CTNNA3 Splice_Site p.X349_splice 0.46 TCGA-AA-A010-01 10 69773912 69773912 C A HERC4 Nonsense_Mutation p.G314* 0.36 TCGA-AA-A010-01 10 69970276 69970276 C T MYPN 3'UTR 0.42 TCGA-AA-A010-01 10 70192012 70192012 A C DNA2 Missense_Mutation p.S694R 0.35 deleterious(0) probably_damaging(0.92) TCGA-AA-A010-01 10 70218913 70218913 C A DNA2 Missense_Mutation p.D309Y 0.34 deleterious(0.01) probably_damaging(0.919) TCGA-AA-A010-01 10 70332956 70332956 G A TET1 Silent p.L287L 0.29 TCGA-AA-A010-01 10 70451575 70451575 C A TET1 3'UTR 0.30 TCGA-AA-A010-01 10 71025450 71025450 C T HKDC1 Missense_Mutation p.R828W 0.40 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 10 71654457 71654457 G T COL13A1 Missense_Mutation p.K210N 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-AA-A010-01 10 7205702 7205702 G T SFMBT2 3'UTR 0.44 TCGA-AA-A010-01 10 7217971 7217971 A G SFMBT2 Silent p.I655I 0.33 TCGA-AA-A010-01 10 7217983 7217983 C A SFMBT2 Missense_Mutation p.E651D 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 10 72307154 72307154 G A PALD1 Silent p.T738T 0.38 TCGA-AA-A010-01 10 7242375 7242375 C T SFMBT2 Splice_Site p.X520_splice 0.30 TCGA-AA-A010-01 10 7244447 7244447 C A SFMBT2 Missense_Mutation p.E494D 0.33 deleterious(0.05) benign(0.422) TCGA-AA-A010-01 10 72494980 72494980 G T ADAMTS14 Nonsense_Mutation p.E473* 0.39 TCGA-AA-A010-01 10 72520698 72520698 G A ADAMTS14 3'UTR 0.38 TCGA-AA-A010-01 10 72532301 72532301 C A TBATA Missense_Mutation p.K313N 0.31 deleterious(0.05) possibly_damaging(0.831) TCGA-AA-A010-01 10 72614506 72614506 G T SGPL1 Missense_Mutation p.K101N 0.36 tolerated(0.23) benign(0.063) TCGA-AA-A010-01 10 72614514 72614514 C A SGPL1 Nonsense_Mutation p.S104* 0.39 TCGA-AA-A010-01 10 7285548 7285548 T G SFMBT2 Missense_Mutation p.K364N 0.55 deleterious(0.01) possibly_damaging(0.902) TCGA-AA-A010-01 10 73045123 73045123 G A UNC5B Silent p.E163E 0.27 TCGA-AA-A010-01 10 73046460 73046460 G T UNC5B Missense_Mutation p.K189N 0.39 deleterious(0) probably_damaging(0.915) TCGA-AA-A010-01 10 73115997 73115997 C T SLC29A3 Missense_Mutation p.A257V 0.35 tolerated(0.14) benign(0.028) TCGA-AA-A010-01 10 73406256 73406256 C T CDH23 Missense_Mutation p.A36V 0.37 tolerated(0.37) probably_damaging(0.932) TCGA-AA-A010-01 10 73567384 73567384 G T CDH23 Missense_Mutation p.S567I 0.40 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 10 74658671 74658671 C A OIT3 Missense_Mutation p.A104D 0.43 deleterious(0) possibly_damaging(0.732) TCGA-AA-A010-01 10 74684190 74684190 G T OIT3 Silent p.G385G 0.31 TCGA-AA-A010-01 10 74886455 74886455 G A NUDT13 Missense_Mutation p.R243H 0.38 tolerated(0.19) benign(0.033) TCGA-AA-A010-01 10 74896584 74896584 C T ECD Missense_Mutation p.E561K 0.36 tolerated(0.47) benign(0.005) TCGA-AA-A010-01 10 74934460 74934460 A G FAM149B1 Silent p.K21K 0.27 TCGA-AA-A010-01 10 74994624 74994624 C T FAM149B1 Nonsense_Mutation p.R468* 0.21 TCGA-AA-A010-01 10 75008608 75008608 C T DNAJC9 5'UTR 0.40 TCGA-AA-A010-01 10 75051203 75051203 C T TTC18 Splice_Site p.X744_splice 0.41 TCGA-AA-A010-01 10 75056788 75056788 C A TTC18 Intron 0.38 TCGA-AA-A010-01 10 75139953 75139953 G A ANXA7 Missense_Mutation p.R331C 0.40 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 10 75184341 75184341 T G MSS51 Missense_Mutation p.Q451H 0.38 deleterious(0) benign(0.365) TCGA-AA-A010-01 10 75187880 75187880 G T MSS51 Missense_Mutation p.P55T 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 10 75289431 75289431 A G USP54 Intron 0.35 TCGA-AA-A010-01 10 75296120 75296120 C A USP54 Missense_Mutation p.D351Y 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 10 75406882 75406882 C T SYNPO2L Missense_Mutation p.G843D 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 75407656 75407656 G T SYNPO2L Missense_Mutation p.S585Y 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-AA-A010-01 10 75435218 75435218 C A AGAP5 Missense_Mutation p.K400N 0.38 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A010-01 10 75886057 75886057 G T AP3M1 Missense_Mutation p.S287Y 0.40 deleterious(0.01) possibly_damaging(0.722) TCGA-AA-A010-01 10 7615128 7615128 C T ITIH5 Missense_Mutation p.R670K 0.35 tolerated(0.39) benign(0.012) TCGA-AA-A010-01 10 7618458 7618458 C T ITIH5 Missense_Mutation p.E646K 0.31 tolerated(0.39) benign(0.071) TCGA-AA-A010-01 10 76285017 76285017 T - ADK Frame_Shift_Del p.T190Qfs*8 0.24 TCGA-AA-A010-01 10 76803639 76803639 C T DUPD1 Missense_Mutation p.A113T 0.39 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 10 76854560 76854560 C A DUSP13 Missense_Mutation p.E207D 0.40 deleterious(0) possibly_damaging(0.625) TCGA-AA-A010-01 10 7708782 7708782 C A ITIH5 Missense_Mutation p.G25V 0.29 tolerated(0.68) benign(0.007) TCGA-AA-A010-01 10 78647029 78647029 G A KCNMA1 Missense_Mutation p.L1219F 0.43 deleterious_low_confidence(0.02) benign(0.095) TCGA-AA-A010-01 10 78713571 78713571 C A KCNMA1 Missense_Mutation p.E766D 0.17 tolerated(0.36) benign(0.02) TCGA-AA-A010-01 10 78734299 78734299 C A KCNMA1 Intron 0.33 TCGA-AA-A010-01 10 78761334 78761334 C A KCNMA1 Intron 0.50 TCGA-AA-A010-01 10 79753101 79753101 C A POLR3A Missense_Mutation p.D881Y 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 79764537 79764537 G A POLR3A Silent p.I728I 0.27 TCGA-AA-A010-01 10 8006647 8006647 G A TAF3 Missense_Mutation p.D392N 0.38 tolerated(0.06) benign(0.007) TCGA-AA-A010-01 10 80976021 80976021 G A ZMIZ1 Silent p.P90P 0.43 TCGA-AA-A010-01 10 8100470 8100470 G A GATA3 Silent p.P148P 0.38 TCGA-AA-A010-01 10 81113638 81113638 T C PPIF 3'UTR 0.36 TCGA-AA-A010-01 10 8116086 8116086 G A GATA3 3'UTR 0.24 TCGA-AA-A010-01 10 81274066 81274066 G T EIF5AL1 3'UTR 0.38 TCGA-AA-A010-01 10 81697547 81697547 C T SFTPD 3'UTR 0.30 TCGA-AA-A010-01 10 81697860 81697860 G A SFTPD Silent p.R292R 0.46 TCGA-AA-A010-01 10 81923884 81923884 C A ANXA11 Nonsense_Mutation p.E292* 0.39 TCGA-AA-A010-01 10 81932623 81932623 G T ANXA11 Intron 0.36 TCGA-AA-A010-01 10 82043684 82043684 C A MAT1A Missense_Mutation p.D94Y 0.46 deleterious(0) possibly_damaging(0.9) TCGA-AA-A010-01 10 84118522 84118522 C A NRG3 Missense_Mutation p.S284Y 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 10 84745005 84745005 T G NRG3 Missense_Mutation p.S579A 0.40 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A010-01 10 85991937 85991937 C A LRIT1 Missense_Mutation p.A540S 0.37 deleterious(0.02) benign(0.356) TCGA-AA-A010-01 10 87362369 87362369 C T GRID1 Silent p.S897S 0.36 TCGA-AA-A010-01 10 87407113 87407113 C T GRID1 Missense_Mutation p.G680D 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 87482866 87482866 G A GRID1 Missense_Mutation p.R631C 0.29 deleterious(0) probably_damaging(0.97) TCGA-AA-A010-01 10 87484280 87484280 A C GRID1 Missense_Mutation p.F563V 0.42 tolerated(0.3) benign(0.009) TCGA-AA-A010-01 10 87615899 87615899 A T GRID1 Missense_Mutation p.F334I 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 10 87675988 87675988 C A GRID1 Missense_Mutation p.E245D 0.19 tolerated(0.11) probably_damaging(0.994) TCGA-AA-A010-01 10 87898579 87898579 G A GRID1 Silent p.N241N 0.42 TCGA-AA-A010-01 10 88439236 88439236 T G LDB3 Missense_Mutation p.I69S 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 10 88703271 88703271 C T MMRN2 Missense_Mutation p.D424N 0.42 deleterious(0.01) possibly_damaging(0.653) TCGA-AA-A010-01 10 88930234 88930234 G T FAM35A Splice_Site p.X545_splice 0.41 TCGA-AA-A010-01 10 89487079 89487079 G A PAPSS2 Missense_Mutation p.V307I 0.40 tolerated(0.75) benign(0.018) TCGA-AA-A010-01 10 89624267 89624267 G T PTEN Missense_Mutation p.R14M 0.39 deleterious(0.01) possibly_damaging(0.572) TCGA-AA-A010-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.71 deleterious(0.02) probably_damaging(0.989) TCGA-AA-A010-01 10 90353890 90353890 C A LIPJ Missense_Mutation p.F106L 0.40 deleterious(0.01) possibly_damaging(0.811) TCGA-AA-A010-01 10 90431625 90431625 G T LIPF Missense_Mutation p.R201I 0.45 deleterious(0) possibly_damaging(0.862) TCGA-AA-A010-01 10 90524298 90524298 C T LIPN Missense_Mutation p.R120W 0.50 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 90537886 90537886 C A LIPN Missense_Mutation p.L362I 0.45 deleterious(0.04) probably_damaging(0.994) TCGA-AA-A010-01 10 91099769 91099769 A G IFIT3 Missense_Mutation p.I453V 0.42 tolerated(0.23) benign(0.277) TCGA-AA-A010-01 10 91162349 91162349 A G IFIT1 Missense_Mutation p.Y106C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 10 91190505 91190505 A C SLC16A12 3'UTR 0.38 TCGA-AA-A010-01 10 91196012 91196012 G T SLC16A12 Missense_Mutation p.L365I 0.30 deleterious(0.02) possibly_damaging(0.838) TCGA-AA-A010-01 10 91201005 91201005 G T SLC16A12 Missense_Mutation p.P103Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 10 91497569 91497569 G A KIF20B Missense_Mutation p.E951K 0.39 tolerated(0.12) benign(0.02) TCGA-AA-A010-01 10 92503398 92503398 C T HTR7 Missense_Mutation p.V449I 0.38 tolerated_low_confidence(0.66) benign(0) TCGA-AA-A010-01 10 92675933 92675933 C A ANKRD1 Missense_Mutation p.D216Y 0.30 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 10 92680037 92680037 C A ANKRD1 Missense_Mutation p.E32D 0.29 tolerated(0.09) benign(0.011) TCGA-AA-A010-01 10 93258674 93258674 C T HECTD2 Missense_Mutation p.P601S 0.31 deleterious(0.03) benign(0.183) TCGA-AA-A010-01 10 93272154 93272154 G T HECTD2 3'UTR 0.50 TCGA-AA-A010-01 10 93390277 93390277 C T PPP1R3C Missense_Mutation p.D121N 0.40 tolerated(0.55) benign(0.003) TCGA-AA-A010-01 10 93572948 93572948 G T TNKS2 Missense_Mutation p.K136N 0.32 deleterious(0.04) probably_damaging(0.96) TCGA-AA-A010-01 10 93579265 93579265 C T TNKS2 Missense_Mutation p.A195V 0.34 tolerated(0.13) possibly_damaging(0.74) TCGA-AA-A010-01 10 93622859 93622859 G A TNKS2 3'UTR 0.38 TCGA-AA-A010-01 10 93702224 93702224 G A BTAF1 Missense_Mutation p.R100Q 0.37 tolerated(0.15) benign(0.053) TCGA-AA-A010-01 10 93719585 93719585 G T BTAF1 Missense_Mutation p.R345I 0.39 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 10 93719 93719 C T TUBB8 Missense_Mutation p.E205K 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.555) TCGA-AA-A010-01 10 93851605 93851605 G T CPEB3 Missense_Mutation p.P557T 0.40 deleterious(0) probably_damaging(0.94) TCGA-AA-A010-01 10 94267882 94267882 C T IDE Missense_Mutation p.E381K 0.33 deleterious(0.04) possibly_damaging(0.599) TCGA-AA-A010-01 10 94393485 94393485 T G KIF11 Missense_Mutation p.I603S 0.47 tolerated(0.21) benign(0.007) TCGA-AA-A010-01 10 94688173 94688173 G A EXOC6 Silent p.S322S 0.34 TCGA-AA-A010-01 10 94733957 94733957 A G EXOC6 Missense_Mutation p.R641G 0.39 deleterious(0.04) benign(0.309) TCGA-AA-A010-01 10 94818043 94818043 A G EXOC6 Silent p.K782K 0.40 TCGA-AA-A010-01 10 94834710 94834710 G A CYP26A1 Missense_Mutation p.E197K 0.39 tolerated(0.17) benign(0.037) TCGA-AA-A010-01 10 94835632 94835632 C T CYP26A1 Missense_Mutation p.T305M 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 95089560 95089560 C A MYOF Nonsense_Mutation p.E1615* 0.34 TCGA-AA-A010-01 10 95276928 95276928 A C CEP55 Missense_Mutation p.K306Q 0.35 tolerated(0.05) benign(0.003) TCGA-AA-A010-01 10 95400691 95400691 G T PDE6C Missense_Mutation p.K584N 0.12 deleterious(0.01) probably_damaging(0.948) TCGA-AA-A010-01 10 95557087 95557087 C A LGI1 Missense_Mutation p.L401M 0.36 deleterious(0.04) probably_damaging(0.996) TCGA-AA-A010-01 10 96073131 96073131 C A PLCE1 Missense_Mutation p.L2042M 0.26 tolerated(0.29) probably_damaging(0.997) TCGA-AA-A010-01 10 96100079 96100079 C A NOC3L Missense_Mutation p.L578F 0.33 tolerated(0.3) benign(0.378) TCGA-AA-A010-01 10 96104685 96104685 C A NOC3L Missense_Mutation p.K465N 0.45 tolerated(0.2) possibly_damaging(0.536) TCGA-AA-A010-01 10 96109106 96109106 C A NOC3L Missense_Mutation p.K386N 0.38 tolerated(0.08) benign(0.197) TCGA-AA-A010-01 10 96354525 96354525 G A HELLS Missense_Mutation p.R721H 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 96580395 96580395 G A CYP2C19 Splice_Site p.X321_splice 0.34 TCGA-AA-A010-01 10 96698430 96698430 G T CYP2C9 5'UTR 0.34 TCGA-AA-A010-01 10 96967012 96967012 C T C10orf129 Missense_Mutation p.R151C 0.36 deleterious(0.04) benign(0.263) TCGA-AA-A010-01 10 97007063 97007063 C A PDLIM1 Missense_Mutation p.K198N 0.37 deleterious(0.02) possibly_damaging(0.883) TCGA-AA-A010-01 10 97031496 97031496 C A PDLIM1 Missense_Mutation p.D48Y 0.36 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 10 97135757 97135757 G T SORBS1 Missense_Mutation p.F570L 0.27 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-AA-A010-01 10 97144028 97144028 G T SORBS1 Missense_Mutation p.L459M 0.33 tolerated_low_confidence(0.18) possibly_damaging(0.836) TCGA-AA-A010-01 10 97366560 97366560 G T ALDH18A1 Missense_Mutation p.L783I 0.35 tolerated(0.4) benign(0.013) TCGA-AA-A010-01 10 97779721 97779721 C A CC2D2B Intron 0.48 TCGA-AA-A010-01 10 97918310 97918310 C T ZNF518A RNA 0.28 TCGA-AA-A010-01 10 97919076 97919076 A G ZNF518A RNA 0.40 TCGA-AA-A010-01 10 97921227 97921227 G A ZNF518A RNA 0.38 TCGA-AA-A010-01 10 97922905 97922905 C A ZNF518A RNA 0.37 TCGA-AA-A010-01 10 98088584 98088584 G T DNTT Missense_Mutation p.K370N 0.29 tolerated(0.47) benign(0.012) TCGA-AA-A010-01 10 98098038 98098038 A G DNTT 3'UTR 0.41 TCGA-AA-A010-01 10 98118731 98118731 T C OPALIN 5'UTR 0.36 TCGA-AA-A010-01 10 98170137 98170137 G T TLL2 Silent p.I381I 0.33 TCGA-AA-A010-01 10 98170157 98170157 A G TLL2 Missense_Mutation p.S375P 0.38 tolerated(0.11) benign(0.04) TCGA-AA-A010-01 10 98312726 98312726 C A TM9SF3 Missense_Mutation p.D251Y 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 10 98336512 98336512 C A TM9SF3 Missense_Mutation p.K59N 0.39 tolerated(0.75) benign(0) TCGA-AA-A010-01 10 98355385 98355385 C T PIK3AP1 Silent p.P789P 0.35 TCGA-AA-A010-01 10 98469553 98469553 G A PIK3AP1 Silent p.V67V 0.44 TCGA-AA-A010-01 10 98715594 98715594 C T LCOR Missense_Mutation p.S406L 0.39 tolerated_low_confidence(0.52) benign(0) TCGA-AA-A010-01 10 98803153 98803153 G A SLIT1 Silent p.F657F 0.39 TCGA-AA-A010-01 10 99019334 99019334 T C ARHGAP19 Missense_Mutation p.D222G 0.36 tolerated(0.1) benign(0.003) TCGA-AA-A010-01 10 99192235 99192235 G A PGAM1 Missense_Mutation p.R240H 0.38 tolerated(0.09) benign(0.004) TCGA-AA-A010-01 10 99531407 99531407 G T SFRP5 Missense_Mutation p.L62I 0.48 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 10 99661369 99661369 G A CRTAC1 Missense_Mutation p.P342S 0.36 tolerated(0.07) possibly_damaging(0.739) TCGA-AA-A010-01 11 100141897 100141897 T C CNTN5 Silent p.F746F 0.40 TCGA-AA-A010-01 11 100170018 100170018 G A CNTN5 Missense_Mutation p.R837Q 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-AA-A010-01 11 100211266 100211266 C T CNTN5 Silent p.F934F 0.30 TCGA-AA-A010-01 11 100922276 100922276 C A PGR Missense_Mutation p.D746Y 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 101353752 101353752 C T TRPC6 Missense_Mutation p.A480T 0.34 deleterious(0.03) benign(0.034) TCGA-AA-A010-01 11 102076776 102076776 C T YAP1 Missense_Mutation p.R319W 0.39 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 11 102196072 102196072 A C BIRC3 Missense_Mutation p.S278R 0.33 tolerated(0.58) benign(0.063) TCGA-AA-A010-01 11 102589264 102589264 G T MMP8 Missense_Mutation p.S222Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 102593305 102593305 G A MMP8 Nonsense_Mutation p.R68* 0.34 TCGA-AA-A010-01 11 1026380 1026380 G T MUC6 Missense_Mutation p.F831L 0.40 unknown(0) TCGA-AA-A010-01 11 102650323 102650323 G A MMP10 Missense_Mutation p.R87C 0.28 deleterious(0.01) benign(0.35) TCGA-AA-A010-01 11 102822868 102822868 G A MMP13 Silent p.F224F 0.44 TCGA-AA-A010-01 11 102826180 102826180 T G MMP13 Missense_Mutation p.I55L 0.20 tolerated(0.82) benign(0.02) TCGA-AA-A010-01 11 102999735 102999735 G A DYNC2H1 Splice_Site p.X651_splice 0.38 TCGA-AA-A010-01 11 103005091 103005091 G T DYNC2H1 Missense_Mutation p.Q716H 0.35 benign(0.127) TCGA-AA-A010-01 11 103029523 103029523 A C DYNC2H1 Missense_Mutation p.L1415F 0.26 probably_damaging(1) TCGA-AA-A010-01 11 103040870 103040870 A C DYNC2H1 Missense_Mutation p.T1668P 0.34 probably_damaging(0.999) TCGA-AA-A010-01 11 103048492 103048492 G T DYNC2H1 Nonsense_Mutation p.E2028* 0.31 TCGA-AA-A010-01 11 103068661 103068661 G T DYNC2H1 Splice_Site p.X2570_splice 0.48 TCGA-AA-A010-01 11 103102062 103102062 G T DYNC2H1 Nonsense_Mutation p.E3143* 0.30 TCGA-AA-A010-01 11 103104864 103104864 G T DYNC2H1 Missense_Mutation p.R3181I 0.38 benign(0.3) TCGA-AA-A010-01 11 103130680 103130680 G T DYNC2H1 Nonsense_Mutation p.E3564* 0.26 TCGA-AA-A010-01 11 103158279 103158279 G A DYNC2H1 Silent p.A3687A 0.32 TCGA-AA-A010-01 11 103182692 103182692 G A DYNC2H1 Missense_Mutation p.R3867Q 0.45 possibly_damaging(0.454) TCGA-AA-A010-01 11 103182735 103182735 T C DYNC2H1 Silent p.C3881C 0.14 TCGA-AA-A010-01 11 103191923 103191923 T - DYNC2H1 Frame_Shift_Del p.P3973Hfs*44 0.16 TCGA-AA-A010-01 11 103349822 103349822 G T DYNC2H1 Splice_Site p.X4263_splice 0.38 TCGA-AA-A010-01 11 103907716 103907716 G A DDI1 Missense_Mutation p.E56K 0.32 deleterious(0.01) benign(0.003) TCGA-AA-A010-01 11 104912099 104912099 A C CARD16 3'UTR 0.44 TCGA-AA-A010-01 11 10527260 10527260 G A AMPD3 Silent p.K720K 0.27 TCGA-AA-A010-01 11 10527316 10527316 G A AMPD3 Missense_Mutation p.R739Q 0.30 tolerated(0.07) possibly_damaging(0.714) TCGA-AA-A010-01 11 105483018 105483018 G A GRIA4 Missense_Mutation p.R35Q 0.43 tolerated(0.58) possibly_damaging(0.48) TCGA-AA-A010-01 11 105769018 105769018 G T GRIA4 Missense_Mutation p.E250D 0.36 tolerated(0.52) benign(0.001) TCGA-AA-A010-01 11 105769108 105769108 G A GRIA4 Silent p.K280K 0.38 TCGA-AA-A010-01 11 105782776 105782776 T A GRIA4 Intron 0.38 TCGA-AA-A010-01 11 105789472 105789472 A - GRIA4 Frame_Shift_Del p.M436Cfs*13 0.30 TCGA-AA-A010-01 11 105795351 105795351 T G GRIA4 Missense_Mutation p.F568C 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 11 105845135 105845135 C A GRIA4 Missense_Mutation p.F836L 0.35 deleterious(0.02) possibly_damaging(0.621) TCGA-AA-A010-01 11 105880229 105880229 T G MSANTD4 3'UTR 0.38 TCGA-AA-A010-01 11 106558335 106558335 C T GUCY1A2 Silent p.S744S 0.43 TCGA-AA-A010-01 11 106579390 106579390 C A GUCY1A2 Missense_Mutation p.M644I 0.29 deleterious(0) possibly_damaging(0.73) TCGA-AA-A010-01 11 107288971 107288971 C A CWF19L2 Missense_Mutation p.E492D 0.38 tolerated(0.17) benign(0.325) TCGA-AA-A010-01 11 107299884 107299884 C A CWF19L2 Missense_Mutation p.E358D 0.29 tolerated(0.21) benign(0.003) TCGA-AA-A010-01 11 107462597 107462597 G A AP000889.3 Silent p.A38A 0.46 TCGA-AA-A010-01 11 107501245 107501245 C A ELMOD1 Silent p.I40I 0.39 TCGA-AA-A010-01 11 10774310 10774310 C A CTR9 Missense_Mutation p.A46D 0.35 tolerated(0.66) benign(0.084) TCGA-AA-A010-01 11 107925480 107925480 G A CUL5 Silent p.S220S 0.35 TCGA-AA-A010-01 11 108115600 108115600 C T ATM Nonsense_Mutation p.R250* 0.27 TCGA-AA-A010-01 11 108168100 108168100 G T ATM Nonsense_Mutation p.E1666* 0.24 TCGA-AA-A010-01 11 108190751 108190751 T G ATM Missense_Mutation p.F2140V 0.39 deleterious(0.05) probably_damaging(0.949) TCGA-AA-A010-01 11 108198453 108198453 C A ATM Missense_Mutation p.P2353T 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 10821272 10821272 C A EIF4G2 Missense_Mutation p.E717D 0.33 deleterious(0.04) probably_damaging(0.948) TCGA-AA-A010-01 11 10827515 10827515 C T EIF4G2 Missense_Mutation p.A63T 0.39 tolerated(0.22) benign(0) TCGA-AA-A010-01 11 109295192 109295192 T G C11orf87 3'UTR 0.50 TCGA-AA-A010-01 11 110007398 110007398 T G ZC3H12C Missense_Mutation p.V11G 0.44 deleterious_low_confidence(0.01) benign(0.031) TCGA-AA-A010-01 11 110453130 110453130 C A ARHGAP20 Missense_Mutation p.E545D 0.37 deleterious(0.03) possibly_damaging(0.677) TCGA-AA-A010-01 11 111167466 111167466 C T COLCA1 5'UTR 0.37 TCGA-AA-A010-01 11 111167833 111167833 T G COLCA1 5'UTR 0.67 TCGA-AA-A010-01 11 111168622 111168622 C T COLCA1 5'UTR 0.29 TCGA-AA-A010-01 11 111420382 111420382 C A LAYN Silent p.V149V 0.31 TCGA-AA-A010-01 11 111618707 111618707 G A PPP2R1B Missense_Mutation p.S457F 0.38 deleterious(0.02) benign(0.032) TCGA-AA-A010-01 11 111740981 111740981 C A ALG9 5'UTR 0.07 TCGA-AA-A010-01 11 111746234 111746234 C A FDXACB1 Missense_Mutation p.E429D 0.37 tolerated(0.1) benign(0.008) TCGA-AA-A010-01 11 111946345 111946345 G A C11orf57 Missense_Mutation p.R16Q 0.35 deleterious(0.05) probably_damaging(0.973) TCGA-AA-A010-01 11 111965564 111965564 G T SDHD Missense_Mutation p.G117V 0.40 deleterious(0.04) possibly_damaging(0.584) TCGA-AA-A010-01 11 112104158 112104158 G A PTS Silent p.T106T 0.30 TCGA-AA-A010-01 11 112832291 112832291 G T NCAM1 Missense_Mutation p.R45I 0.33 deleterious_low_confidence(0.01) benign(0) TCGA-AA-A010-01 11 113105855 113105855 C T NCAM1 Silent p.S647S 0.41 TCGA-AA-A010-01 11 113126621 113126621 C T NCAM1 Silent p.L666L 0.35 TCGA-AA-A010-01 11 113222922 113222922 G T TTC12 Missense_Mutation p.S480I 0.38 tolerated(0.24) benign(0.067) TCGA-AA-A010-01 11 113269732 113269732 G T ANKK1 Missense_Mutation p.K347N 0.47 tolerated(0.1) benign(0.191) TCGA-AA-A010-01 11 113661426 113661426 G T ATF4P4 RNA 0.27 TCGA-AA-A010-01 11 113701639 113701639 G A USP28 Missense_Mutation p.P287L 0.31 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 11 113802570 113802570 G A HTR3B Missense_Mutation p.D117N 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 113853843 113853843 G A HTR3A Missense_Mutation p.V132M 0.35 deleterious(0.02) probably_damaging(0.946) TCGA-AA-A010-01 11 114183100 114183100 C T NNMT Silent p.I232I 0.39 TCGA-AA-A010-01 11 114262222 114262222 T A C11orf71 3'UTR 0.33 TCGA-AA-A010-01 11 114270803 114270803 C T C11orf71 Missense_Mutation p.S84N 0.47 tolerated_low_confidence(0.14) possibly_damaging(0.484) TCGA-AA-A010-01 11 114393738 114393738 T G NXPE1 Missense_Mutation p.K182T 0.37 tolerated(0.43) benign(0.001) TCGA-AA-A010-01 11 114401268 114401268 T G NXPE1 Silent p.G12G 0.31 TCGA-AA-A010-01 11 115047101 115047101 A C CADM1 3'UTR 0.39 TCGA-AA-A010-01 11 115099985 115099985 G A CADM1 Missense_Mutation p.S190L 0.33 tolerated(0.11) benign(0.091) TCGA-AA-A010-01 11 116633414 116633414 C A BUD13 Missense_Mutation p.K297N 0.37 deleterious(0.02) benign(0.393) TCGA-AA-A010-01 11 116660672 116660672 G A APOA5 3'UTR 0.51 TCGA-AA-A010-01 11 116692269 116692269 G A APOA4 Missense_Mutation p.R169W 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A010-01 11 116706573 116706573 C A APOA1 Missense_Mutation p.S252I 0.47 tolerated(0.13) possibly_damaging(0.703) TCGA-AA-A010-01 11 116718221 116718221 C A SIK3 Missense_Mutation p.S1202I 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-A010-01 11 116747014 116747014 G T SIK3 Silent p.L292L 0.43 TCGA-AA-A010-01 11 117150669 117150669 C T RNF214 Silent p.G335G 0.29 TCGA-AA-A010-01 11 117242109 117242109 G A CEP164 Missense_Mutation p.R360K 0.29 tolerated(0.29) benign(0.001) TCGA-AA-A010-01 11 117266344 117266344 G T CEP164 Nonsense_Mutation p.E999* 0.35 TCGA-AA-A010-01 11 117329510 117329510 G A DSCAML1 Silent p.G1236G 0.41 TCGA-AA-A010-01 11 117403126 117403126 G A DSCAML1 Missense_Mutation p.T268I 0.37 deleterious(0.01) probably_damaging(0.947) TCGA-AA-A010-01 11 117713497 117713497 C A FXYD6 Splice_Site 0.33 TCGA-AA-A010-01 11 118015926 118015926 A G SCN4B Missense_Mutation p.V27A 0.37 tolerated(0.28) benign(0.001) TCGA-AA-A010-01 11 118263570 118263570 G T UBE4A Missense_Mutation p.V1019F 0.44 deleterious(0.02) probably_damaging(0.931) TCGA-AA-A010-01 11 118343475 118343475 C T KMT2A Missense_Mutation p.S534L 0.35 benign(0.041) TCGA-AA-A010-01 11 118347543 118347543 G T KMT2A Missense_Mutation p.E1060D 0.32 probably_damaging(0.965) TCGA-AA-A010-01 11 118369218 118369218 G A KMT2A Missense_Mutation p.R1979Q 0.38 probably_damaging(0.979) TCGA-AA-A010-01 11 118373660 118373660 C T KMT2A Silent p.I2351I 0.36 TCGA-AA-A010-01 11 118374605 118374605 A G KMT2A Silent p.G2666G 0.44 TCGA-AA-A010-01 11 118376958 118376958 G A KMT2A Missense_Mutation p.E3451K 0.38 benign(0.085) TCGA-AA-A010-01 11 118377343 118377343 C T KMT2A Missense_Mutation p.S3579F 0.36 benign(0.328) TCGA-AA-A010-01 11 118531884 118531884 G T TREH Missense_Mutation p.P281H 0.38 deleterious(0.02) probably_damaging(1) TCGA-AA-A010-01 11 118764338 118764338 G A CXCR5 Missense_Mutation p.D29N 0.37 tolerated(0.37) benign(0.075) TCGA-AA-A010-01 11 118765587 118765587 C T BCL9L 3'UTR 0.36 TCGA-AA-A010-01 11 118944524 118944524 G T VPS11 Missense_Mutation p.K366N 0.30 deleterious(0) probably_damaging(0.984) TCGA-AA-A010-01 11 118965944 118965944 G A H2AFX Missense_Mutation p.A54V 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A010-01 11 118971500 118971500 G A DPAGT1 Silent p.G112G 0.36 TCGA-AA-A010-01 11 119054330 119054330 C A NLRX1 3'UTR 0.33 TCGA-AA-A010-01 11 119056252 119056252 C T PDZD3 Intron 0.31 TCGA-AA-A010-01 11 119156011 119156011 G A CBL Missense_Mutation p.R559Q 0.40 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-AA-A010-01 11 119991309 119991309 C A TRIM29 Missense_Mutation p.K500N 0.44 tolerated(0.07) benign(0.209) TCGA-AA-A010-01 11 120317752 120317752 G A ARHGEF12 Missense_Mutation p.R516Q 0.36 deleterious(0.03) probably_damaging(0.98) TCGA-AA-A010-01 11 120319829 120319829 G T ARHGEF12 Missense_Mutation p.K583N 0.33 deleterious(0.04) probably_damaging(0.98) TCGA-AA-A010-01 11 120327943 120327943 G T ARHGEF12 Nonsense_Mutation p.E725* 0.34 TCGA-AA-A010-01 11 120347411 120347411 G A ARHGEF12 Missense_Mutation p.A1107T 0.36 deleterious(0) benign(0.38) TCGA-AA-A010-01 11 120831715 120831715 G T GRIK4 Missense_Mutation p.D658Y 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 120925767 120925767 G T TBCEL Missense_Mutation p.E154D 0.33 deleterious(0.01) possibly_damaging(0.737) TCGA-AA-A010-01 11 120996337 120996337 C T TECTA Silent p.C510C 0.39 TCGA-AA-A010-01 11 121059794 121059794 C T TECTA Silent p.C2056C 0.40 TCGA-AA-A010-01 11 121986263 121986263 C A BLID 3'UTR 0.27 TCGA-AA-A010-01 11 121986368 121986368 C A BLID Missense_Mutation p.R88I 0.32 deleterious_low_confidence(0.01) benign(0) TCGA-AA-A010-01 11 122022993 122022993 G T MIR100 RNA 0.32 TCGA-AA-A010-01 11 123814126 123814126 G T OR6T1 Silent p.V140V 0.22 TCGA-AA-A010-01 11 123847819 123847819 C T OR10S1 Missense_Mutation p.D194N 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 11 123886824 123886824 G A OR10G4 Silent p.P181P 0.44 TCGA-AA-A010-01 11 124005676 124005676 G T VWA5A Missense_Mutation p.G432C 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 124294511 124294511 A G OR8B4 Missense_Mutation p.V86A 0.42 deleterious_low_confidence(0.01) benign(0.001) TCGA-AA-A010-01 11 124310898 124310898 G A OR8B8 Silent p.F28F 0.35 TCGA-AA-A010-01 11 124502194 124502194 T G TBRG1 3'UTR 0.46 TCGA-AA-A010-01 11 124618358 124618358 G A VSIG2 Missense_Mutation p.A260V 0.31 tolerated(1) benign(0.005) TCGA-AA-A010-01 11 124637883 124637883 G A MSANTD2 Missense_Mutation p.S238L 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A010-01 11 124745144 124745144 G A ROBO3 Silent p.G737G 0.32 TCGA-AA-A010-01 11 124745870 124745870 G T ROBO3 Missense_Mutation p.E814D 0.35 tolerated(0.19) benign(0.016) TCGA-AA-A010-01 11 124767804 124767804 G T ROBO4 5'UTR 0.37 TCGA-AA-A010-01 11 124793897 124793897 G A HEPACAM Missense_Mutation p.S146L 0.44 deleterious(0) probably_damaging(0.975) TCGA-AA-A010-01 11 124875094 124875094 G T CCDC15 Missense_Mutation p.K799N 0.44 deleterious(0) possibly_damaging(0.881) TCGA-AA-A010-01 11 124955340 124955340 C T SLC37A2 Missense_Mutation p.T433M 0.36 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 11 125359197 125359197 A G FEZ1 Intron 0.38 TCGA-AA-A010-01 11 125366735 125366735 G T AP000708.1 3'UTR 0.49 TCGA-AA-A010-01 11 125523668 125523668 A C CHEK1 Missense_Mutation p.N421H 0.36 tolerated(0.07) probably_damaging(0.969) TCGA-AA-A010-01 11 125542516 125542516 C T ACRV1 Missense_Mutation p.R257Q 0.36 tolerated(0.07) possibly_damaging(0.875) TCGA-AA-A010-01 11 125763900 125763900 C T PUS3 Missense_Mutation p.R409H 0.35 deleterious(0) benign(0.425) TCGA-AA-A010-01 11 1257677 1257677 A G MUC5B Missense_Mutation p.D981G 0.37 unknown(0) TCGA-AA-A010-01 11 125769558 125769558 C A HYLS1 Missense_Mutation p.L99M 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 125769852 125769852 C T HYLS1 Missense_Mutation p.L197F 0.47 tolerated(0.16) probably_damaging(0.943) TCGA-AA-A010-01 11 125792764 125792764 G T DDX25 Missense_Mutation p.K480N 0.28 tolerated(0.07) benign(0.006) TCGA-AA-A010-01 11 125885334 125885334 C T CDON Missense_Mutation p.D334N 0.44 tolerated(0.45) benign(0.035) TCGA-AA-A010-01 11 126133639 126133639 C T SRPR 3'UTR 0.40 TCGA-AA-A010-01 11 126141374 126141374 C T FOXRED1 Missense_Mutation p.S43L 0.38 tolerated(0.07) benign(0.052) TCGA-AA-A010-01 11 126396581 126396581 G A KIRREL3 Silent p.G45G 0.34 TCGA-AA-A010-01 11 1268954 1268954 T C MUC5B Missense_Mutation p.L3615P 0.36 probably_damaging(0.99) TCGA-AA-A010-01 11 128332364 128332364 C T ETS1 Silent p.A450A 0.39 TCGA-AA-A010-01 11 128709225 128709225 C T KCNJ1 Missense_Mutation p.R324H 0.31 deleterious(0.01) possibly_damaging(0.813) TCGA-AA-A010-01 11 128936684 128936684 C T ARHGAP32 Missense_Mutation p.R190Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 12923582 12923582 A C TEAD1 Missense_Mutation p.K265N 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 129246032 129246032 G T BARX2 Missense_Mutation p.E34D 0.38 tolerated(0.05) probably_damaging(0.996) TCGA-AA-A010-01 11 129812497 129812497 C A PRDM10 Nonsense_Mutation p.E264* 0.42 TCGA-AA-A010-01 11 129980458 129980458 A G APLP2 Missense_Mutation p.N102S 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-AA-A010-01 11 129999985 129999985 A C APLP2 Missense_Mutation p.D503A 0.33 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 11 130079804 130079804 G A ST14 3'UTR 0.51 TCGA-AA-A010-01 11 130773175 130773175 G T SNX19 Missense_Mutation p.L850I 0.41 deleterious(0.02) benign(0.424) TCGA-AA-A010-01 11 130785609 130785609 G A SNX19 Nonsense_Mutation p.R76* 0.39 TCGA-AA-A010-01 11 132290134 132290134 G T OPCML Missense_Mutation p.L331I 0.31 tolerated(0.26) benign(0.005) TCGA-AA-A010-01 11 133712383 133712383 C T SPATA19 Missense_Mutation p.R145Q 0.34 tolerated(0.08) possibly_damaging(0.776) TCGA-AA-A010-01 11 133791267 133791267 C T IGSF9B Missense_Mutation p.E785K 0.35 deleterious(0.03) probably_damaging(0.959) TCGA-AA-A010-01 11 13391235 13391235 C A ARNTL Missense_Mutation p.F247L 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 11 13391307 13391307 G T ARNTL Missense_Mutation p.K271N 0.41 deleterious(0.01) possibly_damaging(0.681) TCGA-AA-A010-01 11 134014273 134014273 G A JAM3 Missense_Mutation p.E132K 0.32 tolerated(0.22) benign(0.108) TCGA-AA-A010-01 11 134054648 134054648 C A NCAPD3 Splice_Site p.X779_splice 0.35 TCGA-AA-A010-01 11 134093929 134093929 T G NCAPD3 5'Flank 0.53 TCGA-AA-A010-01 11 134180494 134180494 G A GLB1L3 Missense_Mutation p.D377N 0.32 deleterious(0.02) possibly_damaging(0.819) TCGA-AA-A010-01 11 134180529 134180529 C A GLB1L3 Silent p.L388L 0.35 TCGA-AA-A010-01 11 134243677 134243677 G A GLB1L2 Missense_Mutation p.D524N 0.34 deleterious(0) benign(0.058) TCGA-AA-A010-01 11 14480115 14480115 G T COPB1 Missense_Mutation p.A922D 0.41 tolerated(0.08) benign(0.063) TCGA-AA-A010-01 11 14515315 14515315 G A COPB1 Missense_Mutation p.R122C 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 14535995 14535995 G A PSMA1 Silent p.F105F 0.38 TCGA-AA-A010-01 11 14901970 14901970 G T CYP2R1 Missense_Mutation p.L238M 0.38 tolerated(0.08) benign(0.063) TCGA-AA-A010-01 11 1491375 1491375 C T MOB2 3'UTR 0.38 TCGA-AA-A010-01 11 16007817 16007817 G A SOX6 Missense_Mutation p.R686W 0.40 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 11 1651914 1651914 G A KRTAP5-5 3'UTR 0.36 TCGA-AA-A010-01 11 1718600 1718600 T C KRTAP5-6 Missense_Mutation p.V42A 0.34 tolerated_low_confidence(0.53) unknown(0) TCGA-AA-A010-01 11 17332396 17332396 G T NUCB2 Missense_Mutation p.D170Y 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 17426166 17426166 G T ABCC8 Silent p.V1150V 0.38 TCGA-AA-A010-01 11 17531357 17531357 G T USH1C Missense_Mutation p.P520H 0.42 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-AA-A010-01 11 17537803 17537803 G A USH1C Silent p.F415F 0.35 TCGA-AA-A010-01 11 1768951 1768951 G A RP11-295K3.1 Silent p.F361F 0.36 TCGA-AA-A010-01 11 17794123 17794123 A G KCNC1 Silent p.E494E 0.35 TCGA-AA-A010-01 11 17794171 17794171 G A KCNC1 Intron 0.29 TCGA-AA-A010-01 11 17801047 17801047 G A KCNC1 Missense_Mutation p.E517K 0.34 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-AA-A010-01 11 17803217 17803217 A G KCNC1 Missense_Mutation p.D565G 0.31 tolerated_low_confidence(0.42) benign(0.002) TCGA-AA-A010-01 11 17803470 17803470 C A KCNC1 3'UTR 0.55 TCGA-AA-A010-01 11 17809623 17809623 G T SERGEF 3'UTR 0.37 TCGA-AA-A010-01 11 18062300 18062300 C A TPH1 Missense_Mutation p.D4Y 0.41 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-AA-A010-01 11 18105111 18105111 G T SAAL1 Missense_Mutation p.L404I 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 11 18111021 18111021 T G SAAL1 Missense_Mutation p.K209T 0.42 tolerated(0.11) probably_damaging(0.96) TCGA-AA-A010-01 11 18253136 18253136 C T SAA4 Silent p.S102S 0.34 TCGA-AA-A010-01 11 18291291 18291291 C A SAA1 Missense_Mutation p.F86L 0.37 tolerated(0.85) benign(0.001) TCGA-AA-A010-01 11 18303723 18303723 G T HPS5 Missense_Mutation p.L1035I 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 11 18631440 18631440 G A SPTY2D1 Missense_Mutation p.R676C 0.36 tolerated(0.08) benign(0.023) TCGA-AA-A010-01 11 18737207 18737207 G A IGSF22 Missense_Mutation p.R435C 0.34 tolerated(0.15) benign(0.004) TCGA-AA-A010-01 11 1902699 1902699 G T LSP1 Nonsense_Mutation p.E205* 0.32 TCGA-AA-A010-01 11 1908544 1908544 G T LSP1 Missense_Mutation p.K438N 0.26 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AA-A010-01 11 19197554 19197554 C T ZDHHC13 3'UTR 0.20 TCGA-AA-A010-01 11 19256298 19256298 A C E2F8 Missense_Mutation p.F253L 0.33 deleterious(0.02) benign(0.071) TCGA-AA-A010-01 11 198561 198561 C T ODF3 Silent p.G170G 0.38 TCGA-AA-A010-01 11 20104634 20104634 A G NAV2 Missense_Mutation p.T1862A 0.34 tolerated(0.42) probably_damaging(0.989) TCGA-AA-A010-01 11 20404678 20404678 A G HTATIP2 Missense_Mutation p.D253G 0.38 tolerated(0.13) benign(0.004) TCGA-AA-A010-01 11 20639313 20639313 G T SLC6A5 Missense_Mutation p.K381N 0.43 tolerated(0.18) benign(0.016) TCGA-AA-A010-01 11 20948868 20948868 G T NELL1 Missense_Mutation p.E258D 0.52 deleterious(0.03) probably_damaging(0.937) TCGA-AA-A010-01 11 2169016 2169016 C T INS-IGF2 Silent p.E143E 0.33 TCGA-AA-A010-01 11 2187989 2187989 C T TH Missense_Mutation p.G315D 0.52 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 22225384 22225384 C A ANO5 Missense_Mutation p.F25L 0.48 tolerated(0.62) benign(0.002) TCGA-AA-A010-01 11 22272296 22272296 C A ANO5 Silent p.I341I 0.32 TCGA-AA-A010-01 11 22279228 22279228 G T ANO5 Missense_Mutation p.E445D 0.35 tolerated(0.09) benign(0.02) TCGA-AA-A010-01 11 22294500 22294500 C A ANO5 Missense_Mutation p.L734I 0.41 deleterious(0) possibly_damaging(0.796) TCGA-AA-A010-01 11 22301160 22301160 G T ANO5 Missense_Mutation p.R864I 0.39 deleterious(0) probably_damaging(0.928) TCGA-AA-A010-01 11 22359989 22359989 C A SLC17A6 5'UTR 0.55 TCGA-AA-A010-01 11 22777484 22777484 G T GAS2 Missense_Mutation p.K236N 0.29 deleterious(0) benign(0.2) TCGA-AA-A010-01 11 2324017 2324017 G C TSPAN32 Intron 0.09 TCGA-AA-A010-01 11 24518817 24518817 C T LUZP2 Silent p.L10L 0.41 TCGA-AA-A010-01 11 24750754 24750754 C A LUZP2 Silent p.V34V 0.38 TCGA-AA-A010-01 11 26663454 26663454 A G ANO3 Missense_Mutation p.N718S 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 26743250 26743250 C T SLC5A12 Silent p.K4K 0.29 TCGA-AA-A010-01 11 2683074 2683074 A T KCNQ1 Intron 0.43 TCGA-AA-A010-01 11 27114906 27114906 T G BBOX1 Missense_Mutation p.F176V 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A010-01 11 28106236 28106236 G A KIF18A Silent p.Y339Y 0.40 TCGA-AA-A010-01 11 281136 281136 C A NLRP6 Missense_Mutation p.L468M 0.48 tolerated(0.15) probably_damaging(0.982) TCGA-AA-A010-01 11 28119446 28119446 G A KIF18A Missense_Mutation p.R17C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 292901 292901 C T ATHL1 Nonsense_Mutation p.R392* 0.37 TCGA-AA-A010-01 11 30034091 30034091 T A KCNA4 Silent p.A45A 0.44 TCGA-AA-A010-01 11 3023270 3023270 G A CARS Missense_Mutation p.A764V 0.37 deleterious(0.04) possibly_damaging(0.616) TCGA-AA-A010-01 11 30433106 30433106 G T MPPED2 Missense_Mutation p.T265K 0.36 deleterious(0.01) benign(0.261) TCGA-AA-A010-01 11 30905004 30905004 A C DCDC1 Missense_Mutation p.F450C 0.39 tolerated_low_confidence(0.07) possibly_damaging(0.766) TCGA-AA-A010-01 11 30942434 30942434 G T DCDC1 Missense_Mutation p.A1061D 0.32 deleterious(0.02) possibly_damaging(0.82) TCGA-AA-A010-01 11 32118709 32118709 G A RCN1 Missense_Mutation p.D92N 0.38 deleterious(0.02) benign(0.165) TCGA-AA-A010-01 11 32460708 32460708 T C WT1 5'Flank 0.40 TCGA-AA-A010-01 11 3249360 3249360 G A MRGPRE Missense_Mutation p.L223F 0.32 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 11 3249990 3249990 C T MRGPRE Missense_Mutation p.A13T 0.47 tolerated(0.42) benign(0.013) TCGA-AA-A010-01 11 32657298 32657298 C A CCDC73 Nonsense_Mutation p.E377* 0.28 TCGA-AA-A010-01 11 33053027 33053027 G T DEPDC7 Missense_Mutation p.D296Y 0.26 deleterious(0.01) possibly_damaging(0.691) TCGA-AA-A010-01 11 33123754 33123754 A G CSTF3 Silent p.R265R 0.40 TCGA-AA-A010-01 11 33369440 33369440 G A HIPK3 Silent p.P729P 0.39 TCGA-AA-A010-01 11 34378521 34378521 T C ABTB2 Missense_Mutation p.T204A 0.32 tolerated(0.37) benign(0.004) TCGA-AA-A010-01 11 35016492 35016492 G A PDHX Missense_Mutation p.E427K 0.35 tolerated(0.07) possibly_damaging(0.821) TCGA-AA-A010-01 11 36511954 36511954 G A TRAF6 Nonsense_Mutation p.R335* 0.75 TCGA-AA-A010-01 11 36520088 36520088 T C TRAF6 Silent p.K133K 0.31 TCGA-AA-A010-01 11 36597631 36597631 A C RAG1 Missense_Mutation p.K926T 0.38 tolerated_low_confidence(1) probably_damaging(0.988) TCGA-AA-A010-01 11 3680857 3680857 G T ART1 Missense_Mutation p.E36D 0.38 tolerated(0.1) benign(0.049) TCGA-AA-A010-01 11 3681161 3681161 G A ART1 Missense_Mutation p.A138T 0.40 deleterious(0.03) possibly_damaging(0.734) TCGA-AA-A010-01 11 3744542 3744542 C T NUP98 Missense_Mutation p.S664N 0.31 tolerated(0.26) benign(0.295) TCGA-AA-A010-01 11 3846110 3846110 C T PGAP2 Intron 0.29 TCGA-AA-A010-01 11 397330 397330 C T PKP3 Nonsense_Mutation p.R277* 0.38 TCGA-AA-A010-01 11 40136970 40136970 A G LRRC4C Silent p.H291H 0.42 TCGA-AA-A010-01 11 40137325 40137325 G T LRRC4C Missense_Mutation p.S173Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 40137690 40137690 G T LRRC4C Nonsense_Mutation p.C51* 0.37 TCGA-AA-A010-01 11 43965059 43965060 - T C11orf96 3'Flank 0.32 TCGA-AA-A010-01 11 4406430 4406430 G A TRIM21 3'UTR 0.42 TCGA-AA-A010-01 11 44079991 44079991 C T ACCSL Silent p.V484V 0.33 TCGA-AA-A010-01 11 44080228 44080228 G T ACCSL Nonsense_Mutation p.E535* 0.33 TCGA-AA-A010-01 11 44098861 44098861 G A ACCS Missense_Mutation p.A197T 0.41 deleterious(0.03) possibly_damaging(0.531) TCGA-AA-A010-01 11 4411465 4411465 G T TRIM21 Missense_Mutation p.L59M 0.41 tolerated(0.22) benign(0.436) TCGA-AA-A010-01 11 450599 450599 G T PTDSS2 Missense_Mutation p.E48D 0.42 tolerated(0.17) benign(0.285) TCGA-AA-A010-01 11 45117309 45117309 C T PRDM11 5'UTR 0.38 TCGA-AA-A010-01 11 45268060 45268060 G A SYT13 Missense_Mutation p.P284S 0.48 tolerated(0.5) benign(0.002) TCGA-AA-A010-01 11 4567179 4567179 C A OR52M1 Silent p.I253I 0.39 TCGA-AA-A010-01 11 45919691 45919691 A G MAPK8IP1 Missense_Mutation p.T53A 0.36 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 11 45925681 45925681 C T MAPK8IP1 Silent p.I545I 0.31 TCGA-AA-A010-01 11 45949082 45949082 G A GYLTL1B Silent p.T514T 0.38 TCGA-AA-A010-01 11 45975087 45975087 C T PHF21A Silent p.E361E 0.39 TCGA-AA-A010-01 11 46321557 46321557 C A CREB3L1 Missense_Mutation p.F58L 0.35 tolerated(0.77) probably_damaging(0.993) TCGA-AA-A010-01 11 46394198 46394198 C T DGKZ Missense_Mutation p.R536W 0.41 deleterious(0.01) possibly_damaging(0.828) TCGA-AA-A010-01 11 46405048 46405048 C T MDK 3'UTR 0.34 TCGA-AA-A010-01 11 46637686 46637686 G T HARBI1 Nonsense_Mutation p.Y34* 0.37 TCGA-AA-A010-01 11 46723112 46723112 C T ZNF408 Silent p.R72R 0.36 TCGA-AA-A010-01 11 4675249 4675249 G T OR51E1 3'UTR 0.54 TCGA-AA-A010-01 11 4676486 4676486 A G OR51E1 3'UTR 0.34 TCGA-AA-A010-01 11 46799749 46799749 C T CKAP5 Silent p.P896P 0.42 TCGA-AA-A010-01 11 46810245 46810245 C A CKAP5 Nonsense_Mutation p.E652* 0.34 TCGA-AA-A010-01 11 46894655 46894655 G A LRP4 Missense_Mutation p.R1527C 0.37 deleterious(0.03) probably_damaging(0.98) TCGA-AA-A010-01 11 46898849 46898849 G A LRP4 Missense_Mutation p.R1060C 0.32 deleterious(0) probably_damaging(0.951) TCGA-AA-A010-01 11 47182974 47182974 G T C11orf49 Intron 0.51 TCGA-AA-A010-01 11 47297480 47297480 G A MADD Silent p.S230S 0.39 TCGA-AA-A010-01 11 47298359 47298359 A C MADD Missense_Mutation p.E347A 0.41 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 11 47305929 47305929 T C MADD Missense_Mutation p.V657A 0.39 tolerated_low_confidence(0.11) benign(0.04) TCGA-AA-A010-01 11 47317470 47317470 C T MADD Missense_Mutation p.T1208I 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 11 47469545 47469545 G A RAPSN Missense_Mutation p.A117V 0.35 tolerated(0.42) benign(0.001) TCGA-AA-A010-01 11 47650555 47650555 G T MTCH2 Missense_Mutation p.L195M 0.32 tolerated(0.11) probably_damaging(0.988) TCGA-AA-A010-01 11 47652109 47652109 G A MTCH2 Silent p.F179F 0.41 TCGA-AA-A010-01 11 47731935 47731935 G A AGBL2 Missense_Mutation p.L76F 0.36 tolerated_low_confidence(0.27) benign(0.006) TCGA-AA-A010-01 11 47746225 47746225 G A FNBP4 Missense_Mutation p.P705L 0.37 tolerated(0.09) probably_damaging(0.999) TCGA-AA-A010-01 11 47755640 47755640 G A FNBP4 Silent p.F541F 0.41 TCGA-AA-A010-01 11 48238565 48238565 G A OR4B1 Silent p.E68E 0.31 TCGA-AA-A010-01 11 4824867 4824867 G T OR52R1 Silent p.I248I 0.30 TCGA-AA-A010-01 11 48267086 48267086 G A OR4X2 Missense_Mutation p.G144D 0.42 deleterious(0) probably_damaging(0.955) TCGA-AA-A010-01 11 48346757 48346757 G A OR4C3 Missense_Mutation p.A89T 0.17 tolerated(0.13) benign(0.318) TCGA-AA-A010-01 11 48346826 48346826 T C OR4C3 Missense_Mutation p.Y112H 0.16 tolerated(0.4) benign(0.022) TCGA-AA-A010-01 11 48346836 48346836 G T OR4C3 Missense_Mutation p.R115I 0.16 deleterious(0.01) benign(0.413) TCGA-AA-A010-01 11 48347229 48347229 T A OR4C3 Missense_Mutation p.I246N 0.22 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 48510780 48510780 T C OR4A47 Missense_Mutation p.S146P 0.33 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-AA-A010-01 11 4869653 4869653 C A OR51S1 Missense_Mutation p.M262I 0.37 tolerated(0.06) probably_damaging(0.989) TCGA-AA-A010-01 11 4869683 4869683 G T OR51S1 Silent p.L252L 0.37 TCGA-AA-A010-01 11 49186259 49186259 C A FOLH1 Nonsense_Mutation p.E480* 0.36 TCGA-AA-A010-01 11 49190746 49190746 C T FOLH1 Splice_Site p.X458_splice 0.25 TCGA-AA-A010-01 11 49221834 49221834 G T FOLH1 Silent p.I128I 0.38 TCGA-AA-A010-01 11 4928795 4928795 T A OR51A7 Missense_Mutation p.L66M 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 4929018 4929018 G T OR51A7 Missense_Mutation p.R140M 0.23 deleterious(0.01) possibly_damaging(0.89) TCGA-AA-A010-01 11 4929054 4929054 G T OR51A7 Missense_Mutation p.S152I 0.24 deleterious(0.01) benign(0.208) TCGA-AA-A010-01 11 4929325 4929325 C A OR51A7 Silent p.S242S 0.40 TCGA-AA-A010-01 11 4945264 4945264 C A OR51G1 Missense_Mutation p.Q102H 0.27 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 11 4976118 4976118 G T OR51A2 Missense_Mutation p.L276I 0.77 tolerated(0.15) benign(0.361) TCGA-AA-A010-01 11 49973980 49973980 G A OR4C13 Silent p.A2A 0.33 TCGA-AA-A010-01 11 49974152 49974152 T G OR4C13 Missense_Mutation p.F60V 0.42 deleterious_low_confidence(0.01) benign(0.157) TCGA-AA-A010-01 11 50003776 50003776 T A OR4C12 Nonsense_Mutation p.K88* 0.34 TCGA-AA-A010-01 11 50003932 50003932 T C OR4C12 Missense_Mutation p.T36A 0.41 deleterious_low_confidence(0.02) benign(0.358) TCGA-AA-A010-01 11 5020401 5020401 C A OR51L1 Nonsense_Mutation p.Y63* 0.36 TCGA-AA-A010-01 11 51412278 51412278 T C OR4A5 Missense_Mutation p.N40D 0.32 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-AA-A010-01 11 51515297 51515297 A C OR4C46 Missense_Mutation p.N6H 0.38 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-AA-A010-01 11 5153355 5153355 C T OR52A5 Missense_Mutation p.R173Q 0.26 tolerated(0.17) benign(0.025) TCGA-AA-A010-01 11 5173461 5173461 G T OR52A1 Missense_Mutation p.L47I 0.32 tolerated(1) benign(0.02) TCGA-AA-A010-01 11 5221067 5221067 G T OR51V1 Silent p.I288I 0.46 TCGA-AA-A010-01 11 5221074 5221074 C T OR51V1 Missense_Mutation p.G286D 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 5221475 5221475 T G OR51V1 Missense_Mutation p.K152N 0.28 deleterious(0.03) benign(0.049) TCGA-AA-A010-01 11 5221619 5221619 A C OR51V1 Missense_Mutation p.D104E 0.32 tolerated(0.1) benign(0.098) TCGA-AA-A010-01 11 5221914 5221914 C A OR51V1 Missense_Mutation p.R6I 0.32 tolerated_low_confidence(0.17) benign(0.308) TCGA-AA-A010-01 11 5247996 5247996 G T HBB Missense_Mutation p.F42L 0.46 deleterious(0.04) benign(0.096) TCGA-AA-A010-01 11 5345548 5345548 T C OR51B2 5'UTR 0.37 TCGA-AA-A010-01 11 5345569 5345569 A G OR51B2 5'UTR 0.42 TCGA-AA-A010-01 11 5373598 5373598 A C OR51B6 Silent p.P287P 0.37 TCGA-AA-A010-01 11 5443689 5443689 C A OR51Q1 Missense_Mutation p.L87I 0.33 deleterious(0.01) possibly_damaging(0.529) TCGA-AA-A010-01 11 5461845 5461845 C A OR51I1 Missense_Mutation p.E300D 0.31 deleterious(0.04) benign(0.05) TCGA-AA-A010-01 11 5462092 5462092 A G OR51I1 Missense_Mutation p.L218P 0.33 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 11 55029750 55029750 C T TRIM48 Nonsense_Mutation p.R3* 0.28 TCGA-AA-A010-01 11 5510547 5510547 C A OR52D1 Missense_Mutation p.T204N 0.38 tolerated(0.18) probably_damaging(0.999) TCGA-AA-A010-01 11 55111519 55111519 T C OR4A16 Silent p.N281N 0.38 TCGA-AA-A010-01 11 55135683 55135683 A C OR4A15 Missense_Mutation p.K108N 0.35 tolerated_low_confidence(0.2) probably_damaging(0.919) TCGA-AA-A010-01 11 5529441 5529441 C A UBQLN3 Missense_Mutation p.D450Y 0.36 deleterious(0.03) benign(0.169) TCGA-AA-A010-01 11 55340253 55340253 T C OR4C16 Missense_Mutation p.V217A 0.44 tolerated(0.09) benign(0.032) TCGA-AA-A010-01 11 55418649 55418649 C A OR4S2 Silent p.I90I 0.75 TCGA-AA-A010-01 11 55541805 55541805 G T OR5D13 Missense_Mutation p.D298Y 0.28 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 11 55606947 55606947 C A OR5D16 Missense_Mutation p.F240L 0.30 deleterious(0.03) probably_damaging(1) TCGA-AA-A010-01 11 55653529 55653529 C A TRIM51 Intron 0.47 TCGA-AA-A010-01 11 5566278 5566278 C T OR52H1 Missense_Mutation p.R159Q 0.46 deleterious(0.02) benign(0.272) TCGA-AA-A010-01 11 55681540 55681540 C A OR5W2 Missense_Mutation p.E173D 0.47 tolerated(0.4) possibly_damaging(0.75) TCGA-AA-A010-01 11 55702965 55702965 C T OR5I1 Silent p.E304E 0.37 TCGA-AA-A010-01 11 55735207 55735207 C T OR10AG1 Missense_Mutation p.A245T 0.37 tolerated(0.28) benign(0.003) TCGA-AA-A010-01 11 55797986 55797986 T C OR5AS1 Missense_Mutation p.F31S 0.33 deleterious(0) possibly_damaging(0.848) TCGA-AA-A010-01 11 55890054 55890054 T G OR8H3 Missense_Mutation p.F69C 0.34 deleterious(0) benign(0.304) TCGA-AA-A010-01 11 55944981 55944981 C T OR5J2 Silent p.D296D 0.36 TCGA-AA-A010-01 11 56086117 56086117 T G OR8K3 Missense_Mutation p.L112R 0.35 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-AA-A010-01 11 56113896 56113896 C T OR8K1 Missense_Mutation p.R128C 0.24 deleterious_low_confidence(0.03) benign(0.224) TCGA-AA-A010-01 11 56128270 56128270 C T OR8J1 Missense_Mutation p.P183L 0.35 deleterious(0.02) probably_damaging(0.939) TCGA-AA-A010-01 11 5625868 5625868 G A TRIM6 Intron 0.38 TCGA-AA-A010-01 11 5626762 5626762 C T TRIM6 Missense_Mutation p.R267C 0.39 tolerated(0.12) benign(0.094) TCGA-AA-A010-01 11 5631406 5631406 G A TRIM6 Missense_Mutation p.A297T 0.28 tolerated(1) benign(0.003) TCGA-AA-A010-01 11 5631445 5631445 G T TRIM6 Missense_Mutation p.D310Y 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A010-01 11 5632245 5632245 C A TRIM6 Missense_Mutation p.F408L 0.35 tolerated(0.32) benign(0.012) TCGA-AA-A010-01 11 56510789 56510789 C A OR9G4 Nonsense_Mutation p.G167* 0.28 TCGA-AA-A010-01 11 5653546 5653546 C T TRIM6-TRIM34 Silent p.S349S 0.36 TCGA-AA-A010-01 11 5653882 5653882 C A TRIM34 Missense_Mutation p.F107L 0.35 deleterious(0.02) possibly_damaging(0.651) TCGA-AA-A010-01 11 56756801 56756801 G A OR5AK2 Missense_Mutation p.R138Q 0.40 tolerated(0.81) benign(0.009) TCGA-AA-A010-01 11 56757113 56757113 C A OR5AK2 Missense_Mutation p.A242D 0.38 deleterious(0) probably_damaging(0.958) TCGA-AA-A010-01 11 5699635 5699635 G T TRIM5 Silent p.V181V 0.34 TCGA-AA-A010-01 11 57077627 57077627 C T TNKS1BP1 Missense_Mutation p.G853D 0.36 tolerated(0.39) benign(0.024) TCGA-AA-A010-01 11 57087974 57087974 G A TNKS1BP1 Missense_Mutation p.P103S 0.27 tolerated(0.07) possibly_damaging(0.465) TCGA-AA-A010-01 11 57099243 57099243 G T SSRP1 Silent p.I374I 0.35 TCGA-AA-A010-01 11 57146971 57146971 G A PRG3 Missense_Mutation p.A124V 0.42 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 11 57156720 57156720 C A PRG2 Missense_Mutation p.E43D 0.30 tolerated(0.12) possibly_damaging(0.836) TCGA-AA-A010-01 11 57157418 57157418 C T RP11-872D17.8 Silent p.K105K 0.34 TCGA-AA-A010-01 11 57191485 57191485 C T SLC43A3 Missense_Mutation p.A111T 0.30 deleterious(0.01) possibly_damaging(0.865) TCGA-AA-A010-01 11 57193510 57193510 G A SLC43A3 Silent p.L46L 0.47 TCGA-AA-A010-01 11 5730394 5730394 A C TRIM22 Missense_Mutation p.D338A 0.28 tolerated(0.1) benign(0.23) TCGA-AA-A010-01 11 5730620 5730620 G T TRIM22 Missense_Mutation p.Q413H 0.30 tolerated(0.08) probably_damaging(0.981) TCGA-AA-A010-01 11 57367638 57367638 C A SERPING1 Missense_Mutation p.S113Y 0.05 tolerated(0.07) possibly_damaging(0.608) TCGA-AA-A010-01 11 57506180 57506180 C A TMX2 Missense_Mutation p.F162L 0.38 deleterious(0) probably_damaging(0.947) TCGA-AA-A010-01 11 57576003 57576003 G T CTNND1 Nonsense_Mutation p.E745* 0.39 TCGA-AA-A010-01 11 57576774 57576774 G T CTNND1 Missense_Mutation p.K757N 0.30 tolerated(0.34) benign(0.001) TCGA-AA-A010-01 11 5758225 5758225 G T OR56B1 Missense_Mutation p.R160I 0.37 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 11 57582937 57582937 G A CTNND1 Missense_Mutation p.D925N 0.36 tolerated(0.05) benign(0.003) TCGA-AA-A010-01 11 57583960 57583960 T G CTNND1 3'UTR 0.48 TCGA-AA-A010-01 11 5776085 5776085 G A OR52N4 Missense_Mutation p.V39M 0.34 tolerated(0.05) benign(0.08) TCGA-AA-A010-01 11 5776813 5776813 T C OR52N4 Silent p.N281N 0.41 TCGA-AA-A010-01 11 57798705 57798705 A C OR6Q1 Missense_Mutation p.K94T 0.37 deleterious(0.04) benign(0.205) TCGA-AA-A010-01 11 57958294 57958294 A G OR9Q2 Missense_Mutation p.D111G 0.40 deleterious(0) possibly_damaging(0.721) TCGA-AA-A010-01 11 57970686 57970686 G T OR1S2 Missense_Mutation p.S323Y 0.31 tolerated(0.54) benign(0.202) TCGA-AA-A010-01 11 5799163 5799163 C T OR52N5 Silent p.A234A 0.37 TCGA-AA-A010-01 11 5799447 5799447 G A OR52N5 Missense_Mutation p.R140C 0.32 deleterious(0.01) benign(0.046) TCGA-AA-A010-01 11 58035630 58035630 G T OR10W1 5'UTR 0.37 TCGA-AA-A010-01 11 5809407 5809407 G T OR52N1 Missense_Mutation p.L214M 0.40 tolerated(0.1) possibly_damaging(0.537) TCGA-AA-A010-01 11 58125880 58125880 G T OR5B17 Silent p.I221I 0.53 TCGA-AA-A010-01 11 58125915 58125915 G T OR5B17 Missense_Mutation p.L210I 0.24 tolerated_low_confidence(0.18) benign(0.19) TCGA-AA-A010-01 11 58126055 58126055 C T OR5B17 Missense_Mutation p.R163H 0.23 tolerated_low_confidence(0.16) benign(0.028) TCGA-AA-A010-01 11 58170758 58170758 C T OR5B3 Missense_Mutation p.G42E 0.20 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-AA-A010-01 11 58190547 58190547 T C OR5B2 Missense_Mutation p.N63S 0.41 deleterious_low_confidence(0.02) benign(0.244) TCGA-AA-A010-01 11 58275054 58275054 G T OR5B21 Missense_Mutation p.F175L 0.33 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AA-A010-01 11 58275066 58275066 C A OR5B21 Missense_Mutation p.E171D 0.40 deleterious_low_confidence(0) benign(0.308) TCGA-AA-A010-01 11 58391929 58391929 T G CNTF Missense_Mutation p.I179M 0.22 deleterious(0.01) possibly_damaging(0.746) TCGA-AA-A010-01 11 58607106 58607106 C A GLYATL2 5'UTR 0.41 TCGA-AA-A010-01 11 5862772 5862772 G A OR52E6 Missense_Mutation p.A119V 0.39 tolerated(0.09) benign(0.025) TCGA-AA-A010-01 11 5863125 5863125 C A OR52E6 Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-AA-A010-01 11 58722338 58722338 C A GLYATL1 Silent p.I125I 0.31 TCGA-AA-A010-01 11 58723482 58723482 G T GLYATL1 Missense_Mutation p.Q328H 0.35 tolerated(0.15) possibly_damaging(0.829) TCGA-AA-A010-01 11 58979435 58979435 C T MPEG1 Missense_Mutation p.A302T 0.48 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 11 58979893 58979893 C T MPEG1 Missense_Mutation p.R149Q 0.41 deleterious(0.04) benign(0.297) TCGA-AA-A010-01 11 59807826 59807826 C T OOSP2 5'UTR 0.26 TCGA-AA-A010-01 11 60160234 60160234 A C MS4A7 Missense_Mutation p.K208T 0.31 deleterious(0.02) benign(0.209) TCGA-AA-A010-01 11 60183451 60183451 C A MS4A14 Missense_Mutation p.S370Y 0.44 tolerated(0.28) benign(0.376) TCGA-AA-A010-01 11 60183880 60183880 G T MS4A14 Missense_Mutation p.R513I 0.39 deleterious(0) possibly_damaging(0.83) TCGA-AA-A010-01 11 60197185 60197185 T G MS4A5 Missense_Mutation p.V13G 0.39 deleterious(0) possibly_damaging(0.729) TCGA-AA-A010-01 11 60198382 60198382 C A MS4A5 Missense_Mutation p.F89L 0.41 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 11 60201251 60201251 G A MS4A5 Missense_Mutation p.R118Q 0.43 tolerated(0.61) benign(0.036) TCGA-AA-A010-01 11 60234483 60234483 G A MS4A1 Missense_Mutation p.A209T 0.36 deleterious(0.03) probably_damaging(0.957) TCGA-AA-A010-01 11 60265158 60265158 C A MS4A12 Intron 0.41 TCGA-AA-A010-01 11 60274557 60274557 C A MS4A12 Missense_Mutation p.P255H 0.32 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 11 605145 605145 C T PHRF1 Silent p.I393I 0.43 TCGA-AA-A010-01 11 60558465 60558465 G A MS4A10 Missense_Mutation p.A68T 0.37 deleterious(0) possibly_damaging(0.764) TCGA-AA-A010-01 11 60559755 60559755 C A MS4A10 Silent p.I107I 0.31 TCGA-AA-A010-01 11 60638567 60638567 G T ZP1 Missense_Mutation p.A322S 0.47 tolerated(0.44) benign(0.095) TCGA-AA-A010-01 11 60668769 60668769 C T PRPF19 Missense_Mutation p.V214M 0.31 tolerated(0.06) benign(0.172) TCGA-AA-A010-01 11 607193 607193 G A PHRF1 Silent p.Q578Q 0.49 TCGA-AA-A010-01 11 61120500 61120500 C T CYB561A3 Missense_Mutation p.A186T 0.33 tolerated(0.07) benign(0.124) TCGA-AA-A010-01 11 61277532 61277532 A G LRRC10B 3'UTR 0.44 TCGA-AA-A010-01 11 61277575 61277575 G T LRRC10B 3'UTR 0.41 TCGA-AA-A010-01 11 61277649 61277649 C A LRRC10B 3'UTR 0.43 TCGA-AA-A010-01 11 613215 613215 A C IRF7 Missense_Mutation p.F423V 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 61488178 61488178 C T DAGLA Silent p.F41F 0.49 TCGA-AA-A010-01 11 61557967 61557967 G A TMEM258 Silent p.F37F 0.39 TCGA-AA-A010-01 11 61562893 61562893 G T FEN1 Missense_Mutation p.E20D 0.32 deleterious(0.03) benign(0.048) TCGA-AA-A010-01 11 61582685 61582685 A G FADS1 Intron 0.16 TCGA-AA-A010-01 11 61641219 61641219 G A FADS3 3'UTR 0.38 TCGA-AA-A010-01 11 61673979 61673979 C T RAB3IL1 Missense_Mutation p.A206T 0.49 tolerated(0.46) benign(0.003) TCGA-AA-A010-01 11 61960964 61960964 G T SCGB1D1 3'UTR 0.37 TCGA-AA-A010-01 11 61981287 61981287 G T SCGB2A1 3'UTR 0.41 TCGA-AA-A010-01 11 62286994 62286994 G A AHNAK Silent p.I4965I 0.73 TCGA-AA-A010-01 11 62289564 62289564 C A AHNAK Nonsense_Mutation p.E4109* 0.31 TCGA-AA-A010-01 11 62290900 62290900 C T AHNAK Silent p.E3663E 0.31 TCGA-AA-A010-01 11 62291322 62291322 C T AHNAK Missense_Mutation p.E3523K 0.46 benign(0.364) TCGA-AA-A010-01 11 62295186 62295186 G T AHNAK Missense_Mutation p.H2235N 0.40 benign(0.236) TCGA-AA-A010-01 11 62297260 62297260 T A AHNAK Silent p.G1543G 0.41 TCGA-AA-A010-01 11 6232257 6232257 C T C11orf42 Silent p.F329F 0.28 TCGA-AA-A010-01 11 62379000 62379000 C T EML3 Missense_Mutation p.E31K 0.35 tolerated(0.19) probably_damaging(0.977) TCGA-AA-A010-01 11 62381249 62381249 T C ROM1 Missense_Mutation p.Y166H 0.43 tolerated(0.45) benign(0.003) TCGA-AA-A010-01 11 6239044 6239044 C T FAM160A2 Missense_Mutation p.R605Q 0.28 tolerated(0.25) probably_damaging(0.929) TCGA-AA-A010-01 11 6245047 6245047 C T FAM160A2 Silent p.E190E 0.32 TCGA-AA-A010-01 11 62476260 62476260 C A GNG3 Missense_Mutation p.F70L 0.41 tolerated_low_confidence(1) benign(0.074) TCGA-AA-A010-01 11 62490308 62490308 A G HNRNPUL2 Missense_Mutation p.V320A 0.34 deleterious(0) possibly_damaging(0.815) TCGA-AA-A010-01 11 62558183 62558183 C T TMEM223 Missense_Mutation p.R174Q 0.41 deleterious(0.02) possibly_damaging(0.819) TCGA-AA-A010-01 11 6261477 6261477 C T CNGA4 Silent p.F151F 0.30 TCGA-AA-A010-01 11 6261751 6261751 G A CNGA4 Missense_Mutation p.E243K 0.35 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 11 6265490 6265490 T C CNGA4 Missense_Mutation p.Y527H 0.47 tolerated(0.08) possibly_damaging(0.6) TCGA-AA-A010-01 11 62760682 62760682 G T SLC22A8 3'UTR 0.40 TCGA-AA-A010-01 11 62886690 62886690 G T SLC22A24 Missense_Mutation p.F208L 0.36 tolerated(0.72) benign(0.015) TCGA-AA-A010-01 11 63057884 63057884 C A SLC22A10 Missense_Mutation p.L83M 0.36 tolerated(0.09) benign(0.133) TCGA-AA-A010-01 11 63722083 63722083 G A NAA40 3'UTR 0.36 TCGA-AA-A010-01 11 63991304 63991304 C A TRPT1 3'UTR 0.56 TCGA-AA-A010-01 11 64003748 64003748 G A VEGFB Missense_Mutation p.S108N 0.46 tolerated(0.17) possibly_damaging(0.818) TCGA-AA-A010-01 11 64051767 64051767 C T BAD Missense_Mutation p.S25N 0.44 tolerated(0.13) benign(0.092) TCGA-AA-A010-01 11 64108417 64108417 G A CCDC88B Missense_Mutation p.G82D 0.38 tolerated(0.3) possibly_damaging(0.645) TCGA-AA-A010-01 11 64128624 64128624 G T RPS6KA4 Missense_Mutation p.D161Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 11 6415595 6415595 C T SMPD1 Missense_Mutation p.P552S 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 11 64457949 64457949 C G NRXN2 Splice_Site p.X260_splice 0.26 TCGA-AA-A010-01 11 64496445 64496445 C T RASGRP2 Missense_Mutation p.S554N 0.41 tolerated(0.23) probably_damaging(0.917) TCGA-AA-A010-01 11 64506841 64506841 C A RASGRP2 Missense_Mutation p.E268D 0.33 tolerated(0.72) benign(0.032) TCGA-AA-A010-01 11 64508449 64508449 C T RASGRP2 Silent p.R114R 0.39 TCGA-AA-A010-01 11 6470394 6470394 C T TRIM3 Missense_Mutation p.G700D 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 64824871 64824871 C T NAALADL1 Missense_Mutation p.R192Q 0.32 deleterious(0) probably_damaging(0.942) TCGA-AA-A010-01 11 64988618 64988618 C A SLC22A20 Intron 0.37 TCGA-AA-A010-01 11 65119300 65119300 T C DPF2 3'UTR 0.13 TCGA-AA-A010-01 11 65123479 65123484 AGCGCA - TIGD3 In_Frame_Del p.K71_R72del 0.25 TCGA-AA-A010-01 11 65352435 65352435 C T EHBP1L1 Silent p.F1102F 0.47 TCGA-AA-A010-01 11 65392934 65392934 C T PCNXL3 Missense_Mutation p.R1030W 0.40 deleterious(0.02) possibly_damaging(0.676) TCGA-AA-A010-01 11 65402508 65402508 C T PCNXL3 Missense_Mutation p.R1624C 0.38 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 11 65402839 65402839 C T PCNXL3 Missense_Mutation p.R1702C 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 6550233 6550233 C T DNHD1 Silent p.Y743Y 0.39 TCGA-AA-A010-01 11 65618622 65618622 G A SNX32 Missense_Mutation p.A234T 0.37 tolerated(0.07) benign(0.021) TCGA-AA-A010-01 11 6566330 6566330 C A DNHD1 Nonsense_Mutation p.C1387* 0.32 TCGA-AA-A010-01 11 65686980 65686980 G T DRAP1 Missense_Mutation p.S3I 0.35 deleterious(0.03) benign(0.084) TCGA-AA-A010-01 11 65713272 65713272 G A TSGA10IP RNA 0.32 TCGA-AA-A010-01 11 65715118 65715118 G T TSGA10IP RNA 0.36 TCGA-AA-A010-01 11 65727326 65727326 C A SART1 5'Flank 0.37 TCGA-AA-A010-01 11 65733670 65733670 G A SART1 Missense_Mutation p.S321N 0.36 tolerated(0.23) benign(0.015) TCGA-AA-A010-01 11 65793472 65793472 G T CATSPER1 Missense_Mutation p.H127N 0.32 tolerated(0.07) benign(0.006) TCGA-AA-A010-01 11 65826713 65826713 G T SF3B2 Missense_Mutation p.E408D 0.41 tolerated(0.33) benign(0.022) TCGA-AA-A010-01 11 6588671 6588671 C T DNHD1 Nonsense_Mutation p.R3978* 0.40 TCGA-AA-A010-01 11 6593220 6593220 C T DNHD1 3'UTR 0.43 TCGA-AA-A010-01 11 66031420 66031420 G T KLC2 Missense_Mutation p.E313D 0.34 deleterious(0.02) probably_damaging(0.936) TCGA-AA-A010-01 11 66130917 66130917 G A SLC29A2 Missense_Mutation p.A454V 0.40 tolerated(0.13) probably_damaging(0.996) TCGA-AA-A010-01 11 66204296 66204296 G A MRPL11 Intron 0.42 TCGA-AA-A010-01 11 66243602 66243602 C T PELI3 Silent p.G458G 0.49 TCGA-AA-A010-01 11 6630962 6630962 C T ILK Silent p.V288V 0.37 TCGA-AA-A010-01 11 66359587 66359587 C T CCDC87 Silent p.S300S 0.40 TCGA-AA-A010-01 11 66372963 66372963 T C CCS Missense_Mutation p.W191R 0.39 tolerated(0.08) benign(0.227) TCGA-AA-A010-01 11 66436471 66436471 G A RBM4B Missense_Mutation p.A235V 0.36 tolerated(0.32) benign(0.124) TCGA-AA-A010-01 11 6644892 6644892 C T DCHS1 Missense_Mutation p.R2672Q 0.47 tolerated(0.57) benign(0.003) TCGA-AA-A010-01 11 66478202 66478202 C A SPTBN2 Missense_Mutation p.E308D 0.39 tolerated(0.24) possibly_damaging(0.771) TCGA-AA-A010-01 11 6662846 6662846 A G DCHS1 5'UTR 0.49 TCGA-AA-A010-01 11 67068975 67068975 C T ANKRD13D Silent p.C455C 0.27 TCGA-AA-A010-01 11 67168170 67168170 G T PPP1CA Missense_Mutation p.F147L 0.40 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AA-A010-01 11 67218816 67218816 C T GPR152 Silent p.P460P 0.40 TCGA-AA-A010-01 11 67269549 67269549 C T PITPNM1 Missense_Mutation p.D142N 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 67809226 67809226 G A TCIRG1 Missense_Mutation p.A42T 0.34 deleterious(0.02) possibly_damaging(0.616) TCGA-AA-A010-01 11 67837740 67837740 C A CHKA Missense_Mutation p.R262I 0.37 deleterious(0.03) possibly_damaging(0.653) TCGA-AA-A010-01 11 67925122 67925122 G A SUV420H1 3'UTR 0.45 TCGA-AA-A010-01 11 67925893 67925893 G A SUV420H1 Silent p.D640D 0.40 TCGA-AA-A010-01 11 67926352 67926352 A C SUV420H1 Missense_Mutation p.N487K 0.37 deleterious(0.01) benign(0.211) TCGA-AA-A010-01 11 67938550 67938550 A C SUV420H1 Missense_Mutation p.I303M 0.37 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 11 68382057 68382057 C T PPP6R3 3'UTR 0.29 TCGA-AA-A010-01 11 68522528 68522528 C A CPT1A 3'UTR 0.36 TCGA-AA-A010-01 11 68747543 68747543 C T MRGPRD Missense_Mutation p.E305K 0.36 deleterious(0.01) possibly_damaging(0.885) TCGA-AA-A010-01 11 68830441 68830441 G A TPCN2 Silent p.S212S 0.37 TCGA-AA-A010-01 11 6942807 6942807 A C OR2D3 Missense_Mutation p.H192P 0.34 deleterious(0.01) possibly_damaging(0.905) TCGA-AA-A010-01 11 69518093 69518093 G A FGF19 Missense_Mutation p.A91V 0.34 tolerated(0.16) possibly_damaging(0.905) TCGA-AA-A010-01 11 70009585 70009585 T G ANO1 Intron 0.44 TCGA-AA-A010-01 11 70026156 70026156 C A ANO1 Silent p.I799I 0.39 TCGA-AA-A010-01 11 70034079 70034079 C A ANO1 Missense_Mutation p.P977H 0.42 deleterious_low_confidence(0.01) benign(0.001) TCGA-AA-A010-01 11 70172373 70172373 G T PPFIA1 Missense_Mutation p.M204I 0.42 tolerated(0.28) benign(0.01) TCGA-AA-A010-01 11 7023974 7023974 G T ZNF214 Silent p.V31V 0.35 TCGA-AA-A010-01 11 7068058 7068058 G A NLRP14 Silent p.K706K 0.19 TCGA-AA-A010-01 11 71148915 71148915 G A DHCR7 Silent p.F302F 0.41 TCGA-AA-A010-01 11 71293419 71293419 C A KRTAP5-11 Missense_Mutation p.K155N 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-A010-01 11 71726508 71726508 G A NUMA1 Missense_Mutation p.R681W 0.31 possibly_damaging(0.742) TCGA-AA-A010-01 11 71806131 71806131 G T LRTOMT Missense_Mutation p.R8I 0.37 tolerated_low_confidence(0.06) benign(0.015) TCGA-AA-A010-01 11 71806408 71806408 C A LRTOMT Intron 0.44 TCGA-AA-A010-01 11 721571 721571 C A EPS8L2 Missense_Mutation p.L259I 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 11 72316220 72316220 C A PDE2A Missense_Mutation p.E95D 0.33 tolerated_low_confidence(0.58) benign(0.002) TCGA-AA-A010-01 11 72632940 72632940 C T FCHSD2 Missense_Mutation p.R254Q 0.33 tolerated(0.44) benign(0.019) TCGA-AA-A010-01 11 72700021 72700021 T C FCHSD2 Missense_Mutation p.D170G 0.25 deleterious(0) possibly_damaging(0.892) TCGA-AA-A010-01 11 73105636 73105636 G T RELT Missense_Mutation p.K301N 0.37 deleterious(0) possibly_damaging(0.549) TCGA-AA-A010-01 11 7324274 7324274 C T SYT9 Silent p.I50I 0.35 TCGA-AA-A010-01 11 73789407 73789407 C A C2CD3 Missense_Mutation p.K1452N 0.38 deleterious(0) possibly_damaging(0.549) TCGA-AA-A010-01 11 73850717 73850717 C T C2CD3 Missense_Mutation p.D214N 0.37 tolerated(0.38) benign(0.057) TCGA-AA-A010-01 11 73941859 73941859 C A PPME1 Intron 0.19 TCGA-AA-A010-01 11 7439294 7439294 C A SYT9 Silent p.V424V 0.37 TCGA-AA-A010-01 11 74547217 74547217 G T RNF169 Missense_Mutation p.E523D 0.44 tolerated(0.08) benign(0.272) TCGA-AA-A010-01 11 74800305 74800305 T G OR2AT4 Missense_Mutation p.S152R 0.28 deleterious(0.04) benign(0.082) TCGA-AA-A010-01 11 74915588 74915588 C T SLCO2B1 Missense_Mutation p.S698L 0.41 tolerated_low_confidence(0.06) benign(0.295) TCGA-AA-A010-01 11 75146561 75146561 A G GDPD5 Silent p.S603S 0.44 TCGA-AA-A010-01 11 75146566 75146566 G A GDPD5 Missense_Mutation p.R602W 0.44 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-AA-A010-01 11 75146693 75146693 G A GDPD5 Silent p.S559S 0.37 TCGA-AA-A010-01 11 7531359 7531359 G A OLFML1 Nonsense_Mutation p.W383* 0.28 TCGA-AA-A010-01 11 76371286 76371286 C A LRRC32 Missense_Mutation p.V451L 0.32 deleterious(0.02) benign(0.028) TCGA-AA-A010-01 11 764308 764308 A C TALDO1 Missense_Mutation p.K286Q 0.32 deleterious(0.05) possibly_damaging(0.804) TCGA-AA-A010-01 11 76825373 76825373 G A CAPN5 Missense_Mutation p.D198N 0.35 tolerated(0.26) probably_damaging(0.986) TCGA-AA-A010-01 11 76873294 76873294 A G MYO7A Missense_Mutation p.D491G 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 76905405 76905405 G A MYO7A Missense_Mutation p.D1387N 0.38 deleterious(0.02) possibly_damaging(0.844) TCGA-AA-A010-01 11 76919517 76919517 C T MYO7A Nonsense_Mutation p.R1967* 0.42 TCGA-AA-A010-01 11 76924995 76924995 G A MYO7A Missense_Mutation p.G2177R 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 76944068 76944068 A G GDPD4 Splice_Site p.X463_splice 0.30 TCGA-AA-A010-01 11 76980067 76980067 G T GDPD4 Missense_Mutation p.L176I 0.35 tolerated(0.05) benign(0.315) TCGA-AA-A010-01 11 77103471 77103471 C T PAK1 Missense_Mutation p.G32E 0.39 tolerated(1) benign(0.149) TCGA-AA-A010-01 11 77301277 77301277 G A AQP11 Silent p.T80T 0.42 TCGA-AA-A010-01 11 77386195 77386195 G A RSF1 Nonsense_Mutation p.R1150* 0.36 TCGA-AA-A010-01 11 77475655 77475655 T - RSF1 Frame_Shift_Del p.K89Nfs*3 0.22 TCGA-AA-A010-01 11 77812056 77812056 A C ALG8 Missense_Mutation p.V512G 0.34 tolerated(0.16) benign(0.143) TCGA-AA-A010-01 11 78381549 78381549 G A TENM4 Silent p.F1947F 0.36 TCGA-AA-A010-01 11 7847319 7847319 G T OR5P3 Silent p.A67A 0.37 TCGA-AA-A010-01 11 7949929 7949929 A C OR10A6 Missense_Mutation p.F94C 0.38 deleterious(0) possibly_damaging(0.713) TCGA-AA-A010-01 11 8013377 8013377 G A EIF3F Silent p.P138P 0.40 TCGA-AA-A010-01 11 804326 804326 C A PIDD Missense_Mutation p.E21D 0.36 tolerated_low_confidence(0.76) benign(0) TCGA-AA-A010-01 11 8060354 8060354 G T TUB 5'UTR 0.42 TCGA-AA-A010-01 11 8060420 8060420 G A TUB 5'UTR 0.32 TCGA-AA-A010-01 11 8132564 8132564 C A RIC3 Missense_Mutation p.R264I 0.36 deleterious(0) possibly_damaging(0.828) TCGA-AA-A010-01 11 82549607 82549607 C A PRCP Nonsense_Mutation p.E387* 0.35 TCGA-AA-A010-01 11 82875329 82875329 G T PCF11 Missense_Mutation p.K196N 0.43 tolerated(0.18) probably_damaging(0.948) TCGA-AA-A010-01 11 82880721 82880721 G T PCF11 Missense_Mutation p.R1115I 0.37 tolerated(0.06) possibly_damaging(0.757) TCGA-AA-A010-01 11 82888177 82888177 A C PCF11 Missense_Mutation p.N1270H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 11 82938873 82938873 T G ANKRD42 Missense_Mutation p.I263S 0.46 deleterious(0) possibly_damaging(0.742) TCGA-AA-A010-01 11 82989815 82989815 A G CCDC90B Missense_Mutation p.V93A 0.45 tolerated(1) benign(0.026) TCGA-AA-A010-01 11 83170750 83170750 G A DLG2 3'UTR 0.44 TCGA-AA-A010-01 11 8478990 8478990 C A STK33 Nonsense_Mutation p.E199* 0.35 TCGA-AA-A010-01 11 85375836 85375836 A C CREBZF Silent p.T28T 0.41 TCGA-AA-A010-01 11 85989006 85989006 T C EED Missense_Mutation p.L391S 0.35 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 11 86055656 86055656 G T C11orf73 Missense_Mutation p.K144N 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 11 86111738 86111738 G T CCDC81 Missense_Mutation p.R259I 0.37 deleterious(0.03) benign(0.354) TCGA-AA-A010-01 11 8641045 8641045 T C TRIM66 Missense_Mutation p.D1115G 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 11 86518863 86518863 G T PRSS23 Nonsense_Mutation p.E60* 0.42 TCGA-AA-A010-01 11 86520978 86520978 A C PRSS23 3'UTR 0.26 TCGA-AA-A010-01 11 870430 870430 G A CHID1 Silent p.F368F 0.41 TCGA-AA-A010-01 11 8739339 8739339 C T ST5 Silent p.L526L 0.39 TCGA-AA-A010-01 11 88301050 88301050 A G GRM5 Missense_Mutation p.F601L 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A010-01 11 88583259 88583259 G A GRM5 Silent p.I242I 0.53 TCGA-AA-A010-01 11 89431621 89431621 G A FOLH1B RNA 0.26 TCGA-AA-A010-01 11 89774419 89774419 G A TRIM49C Missense_Mutation p.A354T 0.28 deleterious(0) possibly_damaging(0.604) TCGA-AA-A010-01 11 89868768 89868768 C T NAALAD2 Missense_Mutation p.R42C 0.30 deleterious(0.05) benign(0.302) TCGA-AA-A010-01 11 89896932 89896932 T G NAALAD2 Intron 0.44 TCGA-AA-A010-01 11 92087088 92087088 G A FAT3 Missense_Mutation p.D604N 0.46 probably_damaging(0.999) TCGA-AA-A010-01 11 92088123 92088123 C T FAT3 Missense_Mutation p.L949F 0.36 probably_damaging(1) TCGA-AA-A010-01 11 92531476 92531476 C T FAT3 Missense_Mutation p.A1766V 0.26 benign(0.066) TCGA-AA-A010-01 11 92577131 92577131 C T FAT3 Missense_Mutation p.S3533F 0.28 probably_damaging(0.997) TCGA-AA-A010-01 11 92615949 92615949 C T FAT3 Silent p.N4109N 0.39 TCGA-AA-A010-01 11 93408753 93408753 G T KIAA1731 Missense_Mutation p.R182I 0.42 deleterious(0) possibly_damaging(0.8) TCGA-AA-A010-01 11 93420891 93420891 C A KIAA1731 Missense_Mutation p.S399Y 0.32 deleterious(0) possibly_damaging(0.711) TCGA-AA-A010-01 11 93424913 93424913 G A KIAA1731 Silent p.S467S 0.27 TCGA-AA-A010-01 11 93430976 93430976 T G KIAA1731 Silent p.A966A 0.38 TCGA-AA-A010-01 11 93431194 93431194 C A KIAA1731 Missense_Mutation p.S1039Y 0.35 deleterious(0) possibly_damaging(0.891) TCGA-AA-A010-01 11 93488378 93488378 T A C11orf54 Missense_Mutation p.F111L 0.44 tolerated(1) benign(0.008) TCGA-AA-A010-01 11 93754579 93754579 C A HEPHL1 Missense_Mutation p.F15L 0.31 tolerated(0.33) benign(0.001) TCGA-AA-A010-01 11 94134329 94134329 C T GPR83 Missense_Mutation p.A29T 0.53 tolerated_low_confidence(0.4) benign(0.014) TCGA-AA-A010-01 11 94231249 94231249 C T ANKRD49 Missense_Mutation p.R91W 0.33 deleterious(0.01) possibly_damaging(0.67) TCGA-AA-A010-01 11 94231831 94231831 T G ANKRD49 3'UTR 0.32 TCGA-AA-A010-01 11 94280474 94280474 A G FUT4 3'UTR 0.40 TCGA-AA-A010-01 11 94280570 94280570 G T FUT4 3'UTR 0.38 TCGA-AA-A010-01 11 94310555 94310555 G T PIWIL4 Missense_Mutation p.R137I 0.31 deleterious(0.03) benign(0.016) TCGA-AA-A010-01 11 94583284 94583284 G T AMOTL1 Nonsense_Mutation p.E552* 0.30 TCGA-AA-A010-01 11 94602614 94602614 G T AMOTL1 Missense_Mutation p.A914S 0.31 tolerated_low_confidence(0.27) benign(0.257) TCGA-AA-A010-01 11 94918625 94918625 G T SESN3 Missense_Mutation p.S186Y 0.25 deleterious(0) benign(0.059) TCGA-AA-A010-01 11 95826581 95826581 C A MAML2 Missense_Mutation p.R205I 0.46 possibly_damaging(0.903) TCGA-AA-A010-01 11 96117173 96117173 A C CCDC82 Missense_Mutation p.S247A 0.29 tolerated(0.41) probably_damaging(0.952) TCGA-AA-A010-01 11 96123907 96123907 G A JRKL Missense_Mutation p.A32T 0.39 tolerated(0.2) possibly_damaging(0.559) TCGA-AA-A010-01 11 9867118 9867118 G T SBF2 Missense_Mutation p.S1035Y 0.43 deleterious(0) possibly_damaging(0.88) TCGA-AA-A010-01 12 100042458 100042458 T G FAM71C Missense_Mutation p.L169R 0.43 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 100166742 100166742 C A ANKS1B Missense_Mutation p.K362N 0.34 deleterious(0) benign(0.221) TCGA-AA-A010-01 12 100656122 100656122 A C DEPDC4 Missense_Mutation p.L207R 0.41 deleterious(0) possibly_damaging(0.642) TCGA-AA-A010-01 12 1006698 1006698 C A WNK1 Missense_Mutation p.S2100Y 0.39 deleterious(0.01) possibly_damaging(0.862) TCGA-AA-A010-01 12 100957220 100957220 G T NR1H4 Missense_Mutation p.D472Y 0.41 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 12 101368577 101368577 C T ANO4 Intron 0.25 TCGA-AA-A010-01 12 10145689 10145689 C A CLEC1B 3'UTR 0.32 TCGA-AA-A010-01 12 101560345 101560345 T C SLC5A8 Missense_Mutation p.N485D 0.26 tolerated(0.1) benign(0.002) TCGA-AA-A010-01 12 101577998 101577998 G T SLC5A8 Silent p.L322L 0.32 TCGA-AA-A010-01 12 101603498 101603498 C A SLC5A8 Missense_Mutation p.K43N 0.45 tolerated(0.17) benign(0.009) TCGA-AA-A010-01 12 101680176 101680176 C T UTP20 Missense_Mutation p.S135L 0.39 deleterious(0.03) benign(0.102) TCGA-AA-A010-01 12 101699761 101699761 G A UTP20 Missense_Mutation p.G617D 0.37 tolerated(0.1) probably_damaging(0.998) TCGA-AA-A010-01 12 101723150 101723150 G A UTP20 Missense_Mutation p.A1114T 0.34 tolerated(0.57) benign(0.001) TCGA-AA-A010-01 12 101779378 101779378 C A UTP20 Missense_Mutation p.L2692I 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 101790198 101790198 C T ARL1 Missense_Mutation p.G165D 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 102023211 102023211 G A MYBPC1 Splice_Site p.X35_splice 0.28 TCGA-AA-A010-01 12 10205328 10205328 C A CLEC9A Missense_Mutation p.S14R 0.38 tolerated(0.06) benign(0.154) TCGA-AA-A010-01 12 10215663 10215663 G A CLEC9A Missense_Mutation p.S110N 0.42 deleterious(0.01) benign(0.018) TCGA-AA-A010-01 12 102158747 102158747 C T GNPTAB Missense_Mutation p.E650K 0.33 tolerated(0.64) benign(0.001) TCGA-AA-A010-01 12 10218101 10218101 T C CLEC9A Missense_Mutation p.L199S 0.21 tolerated(0.37) benign(0.124) TCGA-AA-A010-01 12 10218167 10218167 C T CLEC9A Missense_Mutation p.S221L 0.30 tolerated(0.18) benign(0.14) TCGA-AA-A010-01 12 10224024 10224024 C T CLEC1A Missense_Mutation p.E251K 0.39 deleterious(0.02) benign(0.246) TCGA-AA-A010-01 12 102302023 102302023 C T DRAM1 Silent p.V134V 0.36 TCGA-AA-A010-01 12 102479585 102479585 G A NUP37 Missense_Mutation p.P167S 0.40 deleterious(0.01) possibly_damaging(0.78) TCGA-AA-A010-01 12 102874112 102874112 A C IGF1 Missense_Mutation p.F16L 0.43 tolerated(0.78) benign(0.006) TCGA-AA-A010-01 12 102874208 102874208 G T IGF1 5'UTR 0.30 TCGA-AA-A010-01 12 103232865 103232865 T C PAH 3'UTR 0.42 TCGA-AA-A010-01 12 103288643 103288643 T G PAH Missense_Mutation p.K74N 0.40 tolerated(0.48) benign(0.012) TCGA-AA-A010-01 12 103981224 103981224 C A STAB2 5'UTR 0.34 TCGA-AA-A010-01 12 104092946 104092946 C T STAB2 Missense_Mutation p.H1219Y 0.39 tolerated(0.2) probably_damaging(0.999) TCGA-AA-A010-01 12 104131550 104131550 G A STAB2 Missense_Mutation p.D1897N 0.43 tolerated(0.33) benign(0.001) TCGA-AA-A010-01 12 104142814 104142814 C A STAB2 Silent p.V2106V 0.26 TCGA-AA-A010-01 12 104156142 104156142 C T STAB2 Missense_Mutation p.R2484W 0.40 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 12 104333345 104333345 G T HSP90B1 Missense_Mutation p.R345I 0.41 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A010-01 12 104376950 104376950 G T TDG Missense_Mutation p.Q217H 0.27 deleterious(0) benign(0.034) TCGA-AA-A010-01 12 104496976 104496976 G T HCFC2 Missense_Mutation p.K768N 0.26 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 12 104697632 104697632 G A EID3 5'UTR 0.38 TCGA-AA-A010-01 12 104698678 104698678 A C EID3 Missense_Mutation p.E322D 0.39 tolerated(0.08) benign(0.163) TCGA-AA-A010-01 12 105420516 105420516 G A ALDH1L2 Silent p.I841I 0.23 TCGA-AA-A010-01 12 105455465 105455465 C T ALDH1L2 Silent p.T329T 0.41 TCGA-AA-A010-01 12 105514337 105514337 G A KIAA1033 Missense_Mutation p.A175T 0.23 tolerated(0.46) benign(0.004) TCGA-AA-A010-01 12 105553903 105553903 T G KIAA1033 Missense_Mutation p.F1013V 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 10571020 10571022 TTC - KLRC3 In_Frame_Del p.R136del 0.31 TCGA-AA-A010-01 12 10599141 10599141 G A KLRC1 3'UTR 0.36 TCGA-AA-A010-01 12 106773859 106773859 G A POLR3B Missense_Mutation p.R222Q 0.36 tolerated(0.11) benign(0.041) TCGA-AA-A010-01 12 107078609 107078609 C T RFX4 Intron 0.41 TCGA-AA-A010-01 12 107125965 107125965 C A RFX4 Missense_Mutation p.S479Y 0.27 tolerated(0.09) benign(0.14) TCGA-AA-A010-01 12 107371793 107371793 G T MTERFD3 Missense_Mutation p.L234I 0.34 deleterious(0.02) benign(0.145) TCGA-AA-A010-01 12 107486641 107486641 G A CRY1 Silent p.C33C 0.37 TCGA-AA-A010-01 12 108168791 108168791 C T ASCL4 5'UTR 0.36 TCGA-AA-A010-01 12 108620898 108620898 C T WSCD2 Silent p.C312C 0.42 TCGA-AA-A010-01 12 108685988 108685988 C T CMKLR1 Missense_Mutation p.R251H 0.28 tolerated(0.2) benign(0.179) TCGA-AA-A010-01 12 108913102 108913102 C T FICD Silent p.G409G 0.38 TCGA-AA-A010-01 12 108920021 108920021 C T SART3 Missense_Mutation p.R742H 0.39 deleterious(0.04) probably_damaging(0.938) TCGA-AA-A010-01 12 109210873 109210873 G A SSH1 Silent p.S114S 0.42 TCGA-AA-A010-01 12 109293207 109293207 C T DAO Missense_Mutation p.R290W 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 109306216 109306216 C A SVOP 3'UTR 0.43 TCGA-AA-A010-01 12 109536400 109536400 A T UNG Missense_Mutation p.K99M 0.42 tolerated(0.23) benign(0.012) TCGA-AA-A010-01 12 109577534 109577534 C T ACACB Silent p.D108D 0.33 TCGA-AA-A010-01 12 109605744 109605744 G A ACACB Missense_Mutation p.R277H 0.30 deleterious(0) possibly_damaging(0.821) TCGA-AA-A010-01 12 109623543 109623543 G A ACACB Missense_Mutation p.E660K 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 109834288 109834288 C A MYO1H Silent p.A114A 0.36 TCGA-AA-A010-01 12 110345348 110345348 G T TCHP Missense_Mutation p.E181D 0.35 tolerated(0.29) benign(0.312) TCGA-AA-A010-01 12 110385126 110385126 G T GIT2 Missense_Mutation p.L526I 0.40 tolerated(0.42) benign(0.284) TCGA-AA-A010-01 12 110467370 110467370 G A ANKRD13A Silent p.T388T 0.38 TCGA-AA-A010-01 12 11061425 11061425 C T TAS2R13 Missense_Mutation p.R158Q 0.41 tolerated(0.93) benign(0.007) TCGA-AA-A010-01 12 110819603 110819603 A G ANAPC7 Silent p.F396F 0.31 TCGA-AA-A010-01 12 110924180 110924180 A C FAM216A Missense_Mutation p.K119N 0.32 tolerated_low_confidence(0.16) probably_damaging(0.999) TCGA-AA-A010-01 12 110952939 110952939 G T RAD9B Missense_Mutation p.K191N 0.36 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 12 111066751 111066751 C T TCTN1 Intron 0.39 TCGA-AA-A010-01 12 111350922 111350922 G A MYL2 Missense_Mutation p.A127V 0.37 deleterious(0.03) benign(0.202) TCGA-AA-A010-01 12 111786110 111786110 C A CUX2 Missense_Mutation p.A1481D 0.32 deleterious(0) benign(0.347) TCGA-AA-A010-01 12 112121077 112121077 C T BRAP Silent p.T39T 0.36 TCGA-AA-A010-01 12 112479863 112479863 G T NAA25 Missense_Mutation p.S807Y 0.33 deleterious(0.02) benign(0.004) TCGA-AA-A010-01 12 112512534 112512534 C T NAA25 Missense_Mutation p.D271N 0.35 tolerated(0.14) probably_damaging(0.976) TCGA-AA-A010-01 12 112600941 112600941 C T HECTD4 Missense_Mutation p.R4196H 0.37 probably_damaging(0.996) TCGA-AA-A010-01 12 112688090 112688090 C A HECTD4 Nonsense_Mutation p.E1124* 0.33 TCGA-AA-A010-01 12 112844629 112844629 A G RPL6 Silent p.S134S 0.41 TCGA-AA-A010-01 12 113303310 113303310 C T RPH3A Silent p.L108L 0.37 TCGA-AA-A010-01 12 113306118 113306118 C T RPH3A Intron 0.33 TCGA-AA-A010-01 12 113334666 113334666 C T RPH3A 3'UTR 0.38 TCGA-AA-A010-01 12 113346601 113346601 C T OAS1 Silent p.F147F 0.29 TCGA-AA-A010-01 12 113402139 113402139 G A OAS3 Missense_Mutation p.V777I 0.38 tolerated(0.47) benign(0.116) TCGA-AA-A010-01 12 113433253 113433253 C A OAS2 Missense_Mutation p.L201I 0.43 tolerated(0.15) possibly_damaging(0.768) TCGA-AA-A010-01 12 113442985 113442985 G A OAS2 Missense_Mutation p.E476K 0.35 deleterious(0.05) possibly_damaging(0.815) TCGA-AA-A010-01 12 113496167 113496167 G A DTX1 Missense_Mutation p.R57H 0.09 deleterious(0.03) benign(0.003) TCGA-AA-A010-01 12 113515344 113515344 C A DTX1 Silent p.I125I 0.33 TCGA-AA-A010-01 12 113559442 113559442 C T RASAL1 Silent p.G100G 0.59 TCGA-AA-A010-01 12 113724816 113724816 C T TPCN1 Silent p.F589F 0.40 TCGA-AA-A010-01 12 113753143 113753143 T C SLC8B1 Missense_Mutation p.T378A 0.39 tolerated(1) benign(0) TCGA-AA-A010-01 12 113759111 113759111 A C SLC8B1 Missense_Mutation p.F67V 0.37 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 12 113818564 113818564 G A PLBD2 Missense_Mutation p.V292I 0.35 tolerated(1) benign(0.006) TCGA-AA-A010-01 12 113907072 113907072 G T LHX5 Silent p.V84V 0.36 TCGA-AA-A010-01 12 11461396 11461396 C T PRB4 Missense_Mutation p.R174Q 0.50 tolerated_low_confidence(1) unknown(0) TCGA-AA-A010-01 12 11545892 11545892 C A PRB2 Missense_Mutation p.G374C 0.40 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 12 116421009 116421009 G A MED13L Missense_Mutation p.A1623V 0.36 tolerated(0.3) benign(0.015) TCGA-AA-A010-01 12 117013857 117013857 G A MAP1LC3B2 Missense_Mutation p.R37Q 0.34 deleterious(0) possibly_damaging(0.681) TCGA-AA-A010-01 12 117014156 117014156 T G MAP1LC3B2 3'UTR 0.44 TCGA-AA-A010-01 12 117014385 117014385 A G MAP1LC3B2 3'UTR 0.45 TCGA-AA-A010-01 12 117664496 117664496 G A NOS1 Silent p.F1266F 0.44 TCGA-AA-A010-01 12 117749309 117749309 G A NOS1 Missense_Mutation p.P272S 0.42 deleterious_low_confidence(0.02) benign(0.033) TCGA-AA-A010-01 12 117768725 117768725 G A NOS1 Silent p.G50G 0.40 TCGA-AA-A010-01 12 118682724 118682724 G T TAOK3 Missense_Mutation p.S56Y 0.34 deleterious(0) possibly_damaging(0.696) TCGA-AA-A010-01 12 12037474 12037474 C T ETV6 Missense_Mutation p.R369W 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 120499602 120499602 T G CCDC64 Missense_Mutation p.I245S 0.37 deleterious(0.01) possibly_damaging(0.747) TCGA-AA-A010-01 12 120611467 120611467 G T GCN1L1 Silent p.A452A 0.45 TCGA-AA-A010-01 12 120784109 120784109 C T MSI1 Silent p.T292T 0.30 TCGA-AA-A010-01 12 120882510 120882510 G T TRIAP1 3'UTR 0.41 TCGA-AA-A010-01 12 121093879 121093879 C A CABP1 Intron 0.26 TCGA-AA-A010-01 12 121098024 121098024 C T CABP1 Silent p.F237F 0.31 TCGA-AA-A010-01 12 121435762 121435762 A T HNF1A Intron 0.40 TCGA-AA-A010-01 12 121469417 121469417 G T OASL Missense_Mutation p.P162H 0.30 tolerated(0.23) benign(0.015) TCGA-AA-A010-01 12 121666589 121666589 A G P2RX4 Missense_Mutation p.T239A 0.38 tolerated(0.1) possibly_damaging(0.706) TCGA-AA-A010-01 12 122257551 122257551 G - SETD1B Frame_Shift_Del p.A1179Hfs*53 0.16 TCGA-AA-A010-01 12 122295337 122295337 G A HPD Missense_Mutation p.A32V 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A010-01 12 122353786 122353786 C T PSMD9 Missense_Mutation p.R194C 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 12 122361858 122361858 C A WDR66 Missense_Mutation p.L237M 0.38 deleterious(0.02) possibly_damaging(0.885) TCGA-AA-A010-01 12 122369704 122369704 G A WDR66 Missense_Mutation p.R267Q 0.34 tolerated(0.32) benign(0.006) TCGA-AA-A010-01 12 122386923 122386923 G T WDR66 Nonsense_Mutation p.E409* 0.32 TCGA-AA-A010-01 12 122677316 122677316 G T LRRC43 Nonsense_Mutation p.E372* 0.33 TCGA-AA-A010-01 12 122825971 122825971 C T CLIP1 Missense_Mutation p.A594T 0.33 tolerated(0.69) benign(0.003) TCGA-AA-A010-01 12 122967982 122967982 G T ZCCHC8 Intron 0.40 TCGA-AA-A010-01 12 123026644 123026644 A G KNTC1 Missense_Mutation p.T165A 0.39 deleterious(0.05) probably_damaging(0.956) TCGA-AA-A010-01 12 123075194 123075194 G A KNTC1 Missense_Mutation p.G1347D 0.32 deleterious(0) possibly_damaging(0.71) TCGA-AA-A010-01 12 123089602 123089602 G T KNTC1 Missense_Mutation p.R1785I 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 12 123187692 123187692 G A HCAR2 Missense_Mutation p.L47F 0.35 tolerated(0.11) benign(0.304) TCGA-AA-A010-01 12 123285842 123285842 C T CCDC62 Silent p.I383I 0.33 TCGA-AA-A010-01 12 123480052 123480052 G A PITPNM2 Silent p.V646V 0.33 TCGA-AA-A010-01 12 123649954 123649961 TTTGCTTT - MPHOSPH9 Frame_Shift_Del p.K734Rfs*15 0.19 TCGA-AA-A010-01 12 123795611 123795611 G T SBNO1 Missense_Mutation p.L1096I 0.38 tolerated(0.35) possibly_damaging(0.885) TCGA-AA-A010-01 12 123804466 123804466 C T SBNO1 Missense_Mutation p.R927Q 0.39 tolerated(0.05) benign(0.274) TCGA-AA-A010-01 12 123920984 123920984 G A RILPL2 5'UTR 0.24 TCGA-AA-A010-01 12 12397410 12397410 C A LRP6 Nonsense_Mutation p.E79* 0.37 TCGA-AA-A010-01 12 124069274 124069274 G T TMED2 Nonsense_Mutation p.E31* 0.35 TCGA-AA-A010-01 12 124132613 124132613 G A GTF2H3 Missense_Mutation p.E102K 0.37 deleterious(0) possibly_damaging(0.73) TCGA-AA-A010-01 12 124256232 124256232 A C DNAH10 Missense_Mutation p.K67T 0.38 benign(0.002) TCGA-AA-A010-01 12 124265753 124265753 G T DNAH10 Nonsense_Mutation p.E189* 0.35 TCGA-AA-A010-01 12 124298324 124298324 G T DNAH10 Missense_Mutation p.K1097N 0.37 benign(0.08) TCGA-AA-A010-01 12 124305175 124305175 A C DNAH10 Missense_Mutation p.K1232T 0.38 benign(0.004) TCGA-AA-A010-01 12 124311318 124311318 G A DNAH10 Missense_Mutation p.A1304T 0.41 benign(0.005) TCGA-AA-A010-01 12 124320058 124320058 G A DNAH10 Missense_Mutation p.D1511N 0.35 probably_damaging(0.969) TCGA-AA-A010-01 12 124323149 124323149 C T DNAH10 Silent p.F1565F 0.37 TCGA-AA-A010-01 12 124341665 124341665 T C DNAH10 Silent p.V2049V 0.39 TCGA-AA-A010-01 12 124349195 124349195 C T DNAH10 Missense_Mutation p.S2203F 0.29 probably_damaging(1) TCGA-AA-A010-01 12 124352641 124352641 T G DNAH10 Silent p.V2380V 0.41 TCGA-AA-A010-01 12 124356150 124356150 G A DNAH10 Splice_Site p.X2477_splice 0.46 TCGA-AA-A010-01 12 124366225 124366225 C T DNAH10 Silent p.F2778F 0.49 TCGA-AA-A010-01 12 124408312 124408312 C T DNAH10 Silent p.L3719L 0.40 TCGA-AA-A010-01 12 124415978 124415978 G A DNAH10 Missense_Mutation p.R4174Q 0.36 benign(0.148) TCGA-AA-A010-01 12 124428684 124428684 C A CCDC92 Intron 0.58 TCGA-AA-A010-01 12 124429001 124429001 G T CCDC92 Intron 0.33 TCGA-AA-A010-01 12 124497347 124497347 G A ZNF664 Missense_Mutation p.R219K 0.49 deleterious(0.04) benign(0.001) TCGA-AA-A010-01 12 124499028 124499028 G T ZNF664 3'UTR 0.32 TCGA-AA-A010-01 12 124499252 124499252 T G ZNF664 3'UTR 0.33 TCGA-AA-A010-01 12 124810765 124810765 G A NCOR2 Silent p.R2445R 0.37 TCGA-AA-A010-01 12 124811986 124811986 G A NCOR2 Silent p.D2384D 0.35 TCGA-AA-A010-01 12 125587561 125587561 A C AACS Missense_Mutation p.K234T 0.33 deleterious(0.03) benign(0.102) TCGA-AA-A010-01 12 125599080 125599080 G T AACS Missense_Mutation p.D325Y 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 129100820 129100820 C T TMEM132C Silent p.I415I 0.40 TCGA-AA-A010-01 12 129190534 129190534 G T TMEM132C Missense_Mutation p.E1007D 0.35 deleterious(0.03) benign(0.073) TCGA-AA-A010-01 12 129383791 129383791 G A GLT1D1 Missense_Mutation p.A112T 0.32 tolerated(0.13) possibly_damaging(0.695) TCGA-AA-A010-01 12 12940355 12940355 C A APOLD1 Missense_Mutation p.F203L 0.33 tolerated(0.14) probably_damaging(0.952) TCGA-AA-A010-01 12 129559186 129559186 G A TMEM132D Missense_Mutation p.S845F 0.34 deleterious(0.02) benign(0.047) TCGA-AA-A010-01 12 129569107 129569107 G A TMEM132D Silent p.I528I 0.35 TCGA-AA-A010-01 12 130647875 130647875 G T FZD10 Missense_Mutation p.D130Y 0.35 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 12 130649266 130649266 G A FZD10 3'UTR 0.34 TCGA-AA-A010-01 12 130649307 130649307 C A FZD10 3'UTR 0.40 TCGA-AA-A010-01 12 130649309 130649309 T C FZD10 3'UTR 0.34 TCGA-AA-A010-01 12 13068589 13068589 C A GPRC5A 3'UTR 0.56 TCGA-AA-A010-01 12 130839145 130839145 C T PIWIL1 Missense_Mutation p.R370W 0.45 deleterious(0) possibly_damaging(0.9) TCGA-AA-A010-01 12 130842043 130842043 G A PIWIL1 Missense_Mutation p.R537K 0.29 tolerated(0.32) benign(0.114) TCGA-AA-A010-01 12 130883456 130883456 G T RIMBP2 3'UTR 0.56 TCGA-AA-A010-01 12 130892274 130892274 G A RIMBP2 Silent p.V974V 0.35 TCGA-AA-A010-01 12 130897171 130897171 C A RIMBP2 Missense_Mutation p.E938D 0.36 tolerated(0.33) benign(0.008) TCGA-AA-A010-01 12 13102480 13102480 C T GPRC5D Missense_Mutation p.C280Y 0.39 tolerated(0.07) benign(0.221) TCGA-AA-A010-01 12 13102545 13102545 G A GPRC5D Silent p.I258I 0.31 TCGA-AA-A010-01 12 13102572 13102572 G A GPRC5D Silent p.N249N 0.28 TCGA-AA-A010-01 12 131439191 131439191 C A GPR133 Nonsense_Mutation p.S30* 0.43 TCGA-AA-A010-01 12 131622720 131622720 G A GPR133 Silent p.S825S 0.33 TCGA-AA-A010-01 12 132249130 132249130 C A SFSWAP Missense_Mutation p.S617Y 0.41 deleterious(0.02) possibly_damaging(0.627) TCGA-AA-A010-01 12 13242166 13242166 A G GSG1 Intron 0.42 TCGA-AA-A010-01 12 132446388 132446388 G T EP400 Missense_Mutation p.K408N 0.38 unknown(0) TCGA-AA-A010-01 12 132489703 132489703 A G EP400 Missense_Mutation p.D970G 0.33 unknown(0) TCGA-AA-A010-01 12 132497672 132497672 G A EP400 Missense_Mutation p.R1187H 0.29 unknown(0) TCGA-AA-A010-01 12 132498436 132498436 G A EP400 Missense_Mutation p.E1301K 0.36 unknown(0) TCGA-AA-A010-01 12 132510306 132510306 G A EP400 Silent p.K1657K 0.32 TCGA-AA-A010-01 12 132624263 132624263 G A DDX51 Missense_Mutation p.R631W 0.32 deleterious(0) benign(0.069) TCGA-AA-A010-01 12 132624989 132624989 A C DDX51 Missense_Mutation p.F551C 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 12 132905767 132905767 C T RP13-895J2.7 5'Flank 0.50 TCGA-AA-A010-01 12 133158664 133158664 C A FBRSL1 Silent p.I714I 0.26 TCGA-AA-A010-01 12 133198541 133198541 G A P2RX2 Missense_Mutation p.G493S 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A010-01 12 133250213 133250213 G C POLE Missense_Mutation p.P436R 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 133256096 133256096 C T POLE Missense_Mutation p.A189T 0.36 tolerated(0.44) benign(0.001) TCGA-AA-A010-01 12 133324421 133324421 C A ANKLE2 Missense_Mutation p.K409N 0.31 deleterious(0) probably_damaging(0.952) TCGA-AA-A010-01 12 133732193 133732193 C A CTD-2140B24.4 Missense_Mutation p.L121I 0.35 tolerated(0.34) benign(0.01) TCGA-AA-A010-01 12 133779243 133779243 G T ZNF268 Missense_Mutation p.R324I 0.45 deleterious(0) possibly_damaging(0.737) TCGA-AA-A010-01 12 13715666 13715666 G A GRIN2B 3'UTR 0.43 TCGA-AA-A010-01 12 13722814 13722814 G T GRIN2B Missense_Mutation p.S770Y 0.34 deleterious(0) probably_damaging(0.952) TCGA-AA-A010-01 12 13724805 13724805 T C GRIN2B Missense_Mutation p.M702V 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A010-01 12 13906541 13906541 G T GRIN2B Silent p.I240I 0.23 TCGA-AA-A010-01 12 14578080 14578080 A G ATF7IP Missense_Mutation p.N411D 0.49 tolerated_low_confidence(0.37) benign(0.003) TCGA-AA-A010-01 12 14930593 14930593 T G H2AFJ 3'UTR 0.37 TCGA-AA-A010-01 12 14976726 14976726 A G C12orf60 3'UTR 0.44 TCGA-AA-A010-01 12 15067690 15067690 C A ERP27 Missense_Mutation p.K267N 0.39 tolerated(0.09) benign(0.031) TCGA-AA-A010-01 12 15650241 15650241 C A PTPRO Missense_Mutation p.L138M 0.41 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-AA-A010-01 12 15718534 15718534 A C PTPRO Missense_Mutation p.N907H 0.44 tolerated(0.1) probably_damaging(0.944) TCGA-AA-A010-01 12 18576958 18576958 C T PIK3C2G Missense_Mutation p.A789V 0.34 deleterious(0) probably_damaging(0.984) TCGA-AA-A010-01 12 18691191 18691191 G A PIK3C2G Missense_Mutation p.R1101H 0.31 deleterious(0.03) benign(0.047) TCGA-AA-A010-01 12 1937323 1937323 G A LRTM2 Silent p.A3A 0.38 TCGA-AA-A010-01 12 1943888 1943888 G A LRTM2 3'UTR 0.44 TCGA-AA-A010-01 12 19475494 19475494 G T PLEKHA5 Nonsense_Mutation p.E781* 0.34 TCGA-AA-A010-01 12 19671546 19671546 G T AEBP2 Intron 0.28 TCGA-AA-A010-01 12 20790157 20790157 C A PDE3A Missense_Mutation p.R709S 0.39 deleterious(0.01) benign(0.012) TCGA-AA-A010-01 12 20854285 20854285 G C SLCO1C1 Missense_Mutation p.A55P 0.41 deleterious(0) probably_damaging(0.962) TCGA-AA-A010-01 12 20905443 20905443 G A SLCO1C1 3'UTR 0.36 TCGA-AA-A010-01 12 20905553 20905553 C A SLCO1C1 3'UTR 0.50 TCGA-AA-A010-01 12 21030810 21030810 G A SLCO1B3 Missense_Mutation p.V359I 0.45 tolerated(0.55) benign(0.002) TCGA-AA-A010-01 12 21172234 21172234 A G SLCO1B7 Silent p.R46R 0.41 TCGA-AA-A010-01 12 21196341 21196341 A C SLCO1B7 Silent p.I220I 0.40 TCGA-AA-A010-01 12 21327644 21327644 G T SLCO1B1 Splice_Site p.X120_splice 0.29 TCGA-AA-A010-01 12 21350095 21350095 G T SLCO1B1 Nonsense_Mutation p.G315* 0.27 TCGA-AA-A010-01 12 21375292 21375292 G A SLCO1B1 Missense_Mutation p.A581T 0.29 tolerated(1) benign(0.01) TCGA-AA-A010-01 12 21445134 21445134 G T SLCO1A2 Missense_Mutation p.S525Y 0.45 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 12 21446932 21446932 G A SLCO1A2 Silent p.L462L 0.25 TCGA-AA-A010-01 12 21459842 21459842 A C SLCO1A2 Missense_Mutation p.I139S 0.40 tolerated(0.93) benign(0.004) TCGA-AA-A010-01 12 21661373 21661373 C A GOLT1B Missense_Mutation p.F58L 0.40 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 12 21728932 21728932 G C GYS2 Silent p.G121G 0.36 TCGA-AA-A010-01 12 21918964 21918964 C T KCNJ8 Missense_Mutation p.R323H 0.33 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 12 21954112 21954112 G A ABCC9 Nonsense_Mutation p.R1506* 0.24 TCGA-AA-A010-01 12 21965037 21965037 C T ABCC9 Missense_Mutation p.R1386H 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 21998616 21998616 G A ABCC9 Missense_Mutation p.S1006L 0.30 tolerated(0.08) benign(0.062) TCGA-AA-A010-01 12 22040797 22040797 G A ABCC9 Missense_Mutation p.S625L 0.38 tolerated(0.07) benign(0.01) TCGA-AA-A010-01 12 22068668 22068668 T C ABCC9 Silent p.K250K 0.39 TCGA-AA-A010-01 12 22214254 22214254 A C CMAS Missense_Mutation p.K276N 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-AA-A010-01 12 22218239 22218239 A G CMAS Silent p.Q433Q 0.36 TCGA-AA-A010-01 12 22354546 22354546 G A ST8SIA1 Silent p.I337I 0.41 TCGA-AA-A010-01 12 22440221 22440221 T G ST8SIA1 Missense_Mutation p.Q81H 0.42 tolerated(0.11) benign(0.235) TCGA-AA-A010-01 12 22602816 22602816 G T C2CD5 Missense_Mutation p.L961I 0.46 deleterious(0.03) probably_damaging(0.933) TCGA-AA-A010-01 12 22623770 22623770 A C C2CD5 Missense_Mutation p.S812A 0.43 tolerated(0.19) benign(0.007) TCGA-AA-A010-01 12 22624358 22624358 G T C2CD5 Missense_Mutation p.S778Y 0.32 deleterious(0.03) benign(0.139) TCGA-AA-A010-01 12 23887649 23887649 T C SOX5 Missense_Mutation p.H260R 0.34 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 12 24048886 24048886 C A SOX5 Missense_Mutation p.Q37H 0.36 tolerated_low_confidence(0.09) probably_damaging(0.993) TCGA-AA-A010-01 12 24102635 24102635 C A SOX5 5'UTR 0.36 TCGA-AA-A010-01 12 24736889 24736889 G A LINC00477 RNA 0.45 TCGA-AA-A010-01 12 25002728 25002728 C A BCAT1 Missense_Mutation p.K234N 0.37 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 12 250503 250503 C T IQSEC3 Intron 0.40 TCGA-AA-A010-01 12 25150250 25150250 A C C12orf77 5'UTR 0.37 TCGA-AA-A010-01 12 25272172 25272172 C T CASC1 Missense_Mutation p.E435K 0.31 tolerated(0.06) probably_damaging(0.957) TCGA-AA-A010-01 12 25297373 25297373 C A CASC1 Nonsense_Mutation p.E310* 0.40 TCGA-AA-A010-01 12 25297606 25297606 C A CASC1 Missense_Mutation p.R232I 0.34 deleterious(0) possibly_damaging(0.894) TCGA-AA-A010-01 12 25311443 25311443 C T CASC1 Missense_Mutation p.R54Q 0.36 tolerated(0.11) benign(0.152) TCGA-AA-A010-01 12 25357151 25357151 G A LYRM5 Missense_Mutation p.E60K 0.32 tolerated(0.1) benign(0.016) TCGA-AA-A010-01 12 26277707 26277707 G A BHLHE41 Silent p.D2D 0.33 TCGA-AA-A010-01 12 26493180 26493180 G A ITPR2 Missense_Mutation p.R2647W 0.31 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 12 26647092 26647092 T G ITPR2 Missense_Mutation p.Q1788H 0.31 tolerated(0.05) benign(0.396) TCGA-AA-A010-01 12 266754 266754 C A IQSEC3 Silent p.I779I 0.36 TCGA-AA-A010-01 12 26808656 26808657 - T ITPR2 Frame_Shift_Ins p.N858Kfs*2 0.31 TCGA-AA-A010-01 12 26985719 26985719 C A ITPR2 5'UTR 0.33 TCGA-AA-A010-01 12 2702465 2702465 C T CACNA1C Missense_Mutation p.P873S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 12 27059251 27059251 G T ASUN Missense_Mutation p.L689I 0.31 deleterious(0.03) possibly_damaging(0.896) TCGA-AA-A010-01 12 27132837 27132837 C T TM7SF3 Missense_Mutation p.V357I 0.34 tolerated(0.69) benign(0.007) TCGA-AA-A010-01 12 27461330 27461330 G T STK38L Missense_Mutation p.R82M 0.40 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 12 27554510 27554510 G T ARNTL2 Missense_Mutation p.D441Y 0.34 tolerated(0.16) probably_damaging(0.998) TCGA-AA-A010-01 12 2783671 2783671 C T CACNA1C Intron 0.38 TCGA-AA-A010-01 12 27849545 27849545 T C REP15 Missense_Mutation p.V17A 0.37 tolerated(0.37) benign(0.004) TCGA-AA-A010-01 12 27850463 27850463 T G REP15 3'UTR 0.47 TCGA-AA-A010-01 12 28116171 28116171 G T PTHLH Intron 0.41 TCGA-AA-A010-01 12 29446413 29446413 A G FAR2 Intron 0.35 TCGA-AA-A010-01 12 29598316 29598316 G A OVCH1 Missense_Mutation p.L926F 0.33 tolerated(0.22) possibly_damaging(0.778) TCGA-AA-A010-01 12 307155 307155 C T SLC6A12 Silent p.A287A 0.36 TCGA-AA-A010-01 12 30787093 30787093 C T IPO8 Silent p.A941A 0.27 TCGA-AA-A010-01 12 30876240 30876240 C A CAPRIN2 Nonsense_Mutation p.E666* 0.44 TCGA-AA-A010-01 12 30886566 30886566 T C CAPRIN2 Missense_Mutation p.T297A 0.27 deleterious(0) probably_damaging(0.985) TCGA-AA-A010-01 12 31238022 31238022 C T DDX11 Silent p.A200A 0.08 TCGA-AA-A010-01 12 31446754 31446754 C T FAM60A Missense_Mutation p.E114K 0.33 tolerated(0.19) benign(0.187) TCGA-AA-A010-01 12 31600698 31600698 G T DENND5B Silent p.S545S 0.43 TCGA-AA-A010-01 12 31944834 31944834 G A H3F3C Silent p.V89V 0.31 TCGA-AA-A010-01 12 32137217 32137217 A C KIAA1551 Missense_Mutation p.S1110R 0.45 deleterious(0.04) benign(0.082) TCGA-AA-A010-01 12 32140245 32140245 G A KIAA1551 Missense_Mutation p.S1692N 0.32 tolerated(0.9) benign(0.003) TCGA-AA-A010-01 12 32145506 32145506 T G KIAA1551 3'UTR 0.38 TCGA-AA-A010-01 12 32893155 32893155 C T DNM1L Missense_Mutation p.A622V 0.34 tolerated(0.16) benign(0.049) TCGA-AA-A010-01 12 32896361 32896361 C A DNM1L 3'UTR 0.29 TCGA-AA-A010-01 12 32994125 32994125 A C PKP2 Missense_Mutation p.L509V 0.32 deleterious(0) probably_damaging(0.976) TCGA-AA-A010-01 12 33579261 33579261 A T SYT10 Silent p.V107V 0.36 TCGA-AA-A010-01 12 351897 351897 T C SLC6A13 Missense_Mutation p.I121V 0.35 tolerated(0.19) probably_damaging(0.999) TCGA-AA-A010-01 12 3600710 3600710 C T PRMT8 5'UTR 0.38 TCGA-AA-A010-01 12 38714293 38714293 C A ALG10B Missense_Mutation p.L234I 0.40 tolerated(0.1) benign(0.019) TCGA-AA-A010-01 12 39047733 39047733 G A CPNE8 Missense_Mutation p.A549V 0.35 tolerated(0.22) benign(0.186) TCGA-AA-A010-01 12 39124141 39124141 A G CPNE8 Missense_Mutation p.F248L 0.29 deleterious(0.01) benign(0.438) TCGA-AA-A010-01 12 40012548 40012548 G A ABCD2 Silent p.G290G 0.49 TCGA-AA-A010-01 12 402187 402187 T A KDM5A Missense_Mutation p.K1535M 0.46 deleterious(0.02) probably_damaging(0.984) TCGA-AA-A010-01 12 40668679 40668679 C T LRRK2 Missense_Mutation p.L609F 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A010-01 12 40699634 40699634 C A LRRK2 Silent p.V1275V 0.32 TCGA-AA-A010-01 12 40707879 40707879 A C LRRK2 Missense_Mutation p.I1548L 0.41 tolerated(0.36) benign(0.11) TCGA-AA-A010-01 12 40749927 40749927 A C LRRK2 Missense_Mutation p.N2261H 0.56 tolerated(0.1) benign(0.002) TCGA-AA-A010-01 12 41312458 41312458 G T CNTN1 Nonsense_Mutation p.G38* 0.32 TCGA-AA-A010-01 12 41408099 41408099 C T CNTN1 Missense_Mutation p.A728V 0.19 tolerated(0.06) benign(0.003) TCGA-AA-A010-01 12 41410583 41410583 C T CNTN1 Missense_Mutation p.P762S 0.40 tolerated(0.2) possibly_damaging(0.829) TCGA-AA-A010-01 12 41831759 41831759 T G PDZRN4 Intron 0.36 TCGA-AA-A010-01 12 41966269 41966269 G A PDZRN4 Missense_Mutation p.R563Q 0.40 deleterious(0.01) possibly_damaging(0.836) TCGA-AA-A010-01 12 41966490 41966490 A G PDZRN4 Missense_Mutation p.I637V 0.43 tolerated(0.61) benign(0.019) TCGA-AA-A010-01 12 42512841 42512841 A G GXYLT1 Silent p.I149I 0.25 TCGA-AA-A010-01 12 42854042 42854042 G T PRICKLE1 Missense_Mutation p.L689I 0.35 deleterious(0.04) benign(0.139) TCGA-AA-A010-01 12 42858326 42858326 G T PRICKLE1 Missense_Mutation p.H504N 0.42 tolerated(0.13) benign(0.135) TCGA-AA-A010-01 12 42863287 42863287 G T PRICKLE1 Missense_Mutation p.L117M 0.37 deleterious(0.04) possibly_damaging(0.612) TCGA-AA-A010-01 12 43833743 43833743 C A ADAMTS20 Missense_Mutation p.R807I 0.53 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 12 43858495 43858495 C A ADAMTS20 Nonsense_Mutation p.E470* 0.30 TCGA-AA-A010-01 12 43884226 43884226 A G ADAMTS20 Silent p.C363C 0.34 TCGA-AA-A010-01 12 44139877 44139877 C A PUS7L Missense_Mutation p.R412I 0.35 deleterious(0.04) possibly_damaging(0.688) TCGA-AA-A010-01 12 44142353 44142353 T C PUS7L Missense_Mutation p.K324E 0.40 tolerated(1) benign(0.006) TCGA-AA-A010-01 12 44191184 44191184 C A TWF1 Missense_Mutation p.K234N 0.29 tolerated(0.26) benign(0.003) TCGA-AA-A010-01 12 44693440 44693440 G A TMEM117 Missense_Mutation p.R229Q 0.43 tolerated(0.2) possibly_damaging(0.457) TCGA-AA-A010-01 12 45170890 45170890 C A NELL2 Missense_Mutation p.D283Y 0.37 deleterious(0) probably_damaging(0.959) TCGA-AA-A010-01 12 45173675 45173675 C T NELL2 Missense_Mutation p.A206T 0.32 tolerated(0.46) possibly_damaging(0.886) TCGA-AA-A010-01 12 45567648 45567648 G T PLEKHA8P1 RNA 0.35 TCGA-AA-A010-01 12 45761564 45761564 C T ANO6 Silent p.C385C 0.30 TCGA-AA-A010-01 12 4598817 4598817 A C C12orf4 3'UTR 0.50 TCGA-AA-A010-01 12 46230691 46230691 C T ARID2 Missense_Mutation p.R314C 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A010-01 12 4628012 4628012 C A C12orf4 Nonsense_Mutation p.E255* 0.33 TCGA-AA-A010-01 12 46316915 46316915 A G SCAF11 Missense_Mutation p.V1310A 0.40 deleterious(0.03) benign(0.196) TCGA-AA-A010-01 12 46320233 46320233 C A SCAF11 Missense_Mutation p.R1084I 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 46320405 46320405 T G SCAF11 Missense_Mutation p.K1027Q 0.39 deleterious(0) possibly_damaging(0.756) TCGA-AA-A010-01 12 46320627 46320627 A G SCAF11 Missense_Mutation p.S953P 0.34 deleterious(0) probably_damaging(0.921) TCGA-AA-A010-01 12 46320828 46320828 C A SCAF11 Nonsense_Mutation p.E886* 0.46 TCGA-AA-A010-01 12 4634440 4634440 G T C12orf4 Missense_Mutation p.N236K 0.32 tolerated(0.19) benign(0.015) TCGA-AA-A010-01 12 4665525 4665525 C T RAD51AP1 Missense_Mutation p.S260L 0.42 tolerated(0.12) benign(0.111) TCGA-AA-A010-01 12 47178416 47178416 C T SLC38A4 Silent p.G134G 0.31 TCGA-AA-A010-01 12 4736597 4736597 C A AKAP3 Missense_Mutation p.D491Y 0.37 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 12 4737323 4737323 G A AKAP3 Missense_Mutation p.R249C 0.42 tolerated(0.1) benign(0.126) TCGA-AA-A010-01 12 47472929 47472929 C T AMIGO2 Intron 0.49 TCGA-AA-A010-01 12 4796149 4796149 G T NDUFA9 Missense_Mutation p.D337Y 0.42 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 12 48119314 48119314 A G ENDOU 5'UTR 0.47 TCGA-AA-A010-01 12 48151685 48151685 C A RAPGEF3 Missense_Mutation p.E61D 0.31 tolerated_low_confidence(0.08) benign(0.003) TCGA-AA-A010-01 12 4855382 4855382 A T GALNT8 Silent p.G377G 0.50 TCGA-AA-A010-01 12 48723899 48723899 G T H1FNT 3'UTR 0.38 TCGA-AA-A010-01 12 4873124 4873124 A C GALNT8 Missense_Mutation p.N502H 0.05 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 12 48741048 48741048 G A ZNF641 Missense_Mutation p.A102V 0.46 deleterious(0.03) probably_damaging(0.986) TCGA-AA-A010-01 12 48919710 48919710 C T OR8S1 Missense_Mutation p.A99V 0.36 tolerated(0.11) benign(0.045) TCGA-AA-A010-01 12 49047774 49047774 C A KANSL2 3'UTR 0.52 TCGA-AA-A010-01 12 49054256 49054256 C T KANSL2 Missense_Mutation p.E374K 0.38 deleterious(0.04) probably_damaging(0.96) TCGA-AA-A010-01 12 49072889 49072889 C T KANSL2 Missense_Mutation p.D159N 0.43 tolerated(0.11) possibly_damaging(0.535) TCGA-AA-A010-01 12 49087826 49087826 C A CCNT1 Nonsense_Mutation p.E391* 0.32 TCGA-AA-A010-01 12 4919634 4919634 G A KCNA6 Missense_Mutation p.E143K 0.39 tolerated(0.33) benign(0.047) TCGA-AA-A010-01 12 49220150 49220150 C T CACNB3 Missense_Mutation p.A248V 0.43 deleterious(0.04) benign(0.025) TCGA-AA-A010-01 12 4922829 4922829 G T KCNA6 3'UTR 0.40 TCGA-AA-A010-01 12 49315281 49315281 A C CCDC65 3'UTR 0.28 TCGA-AA-A010-01 12 49360090 49360090 G A WNT10B Nonsense_Mutation p.R320* 0.40 TCGA-AA-A010-01 12 49390405 49390405 G T DDN 3'UTR 0.27 TCGA-AA-A010-01 12 49442545 49442545 T C KMT2D Missense_Mutation p.D1343G 0.38 probably_damaging(0.995) TCGA-AA-A010-01 12 49690256 49690256 C T PRPH Silent p.R216R 0.43 TCGA-AA-A010-01 12 49726811 49726811 G A C1QL4 3'UTR 0.37 TCGA-AA-A010-01 12 49743130 49743130 G A DNAJC22 Missense_Mutation p.A159T 0.40 deleterious(0.02) possibly_damaging(0.536) TCGA-AA-A010-01 12 49949427 49949427 G T KCNH3 Missense_Mutation p.D721Y 0.43 deleterious(0.02) possibly_damaging(0.531) TCGA-AA-A010-01 12 49952722 49952722 G T MCRS1 Missense_Mutation p.F415L 0.26 deleterious(0) probably_damaging(0.976) TCGA-AA-A010-01 12 49993730 49993730 G A FAM186B Nonsense_Mutation p.R565* 0.37 TCGA-AA-A010-01 12 50037088 50037088 G A PRPF40B Missense_Mutation p.G763D 0.37 tolerated_low_confidence(0.18) probably_damaging(0.969) TCGA-AA-A010-01 12 50052231 50052231 A C FMNL3 Missense_Mutation p.V200G 0.40 deleterious(0.01) benign(0.067) TCGA-AA-A010-01 12 5020764 5020764 G A KCNA1 Missense_Mutation p.D74N 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 5021052 5021052 G A KCNA1 Missense_Mutation p.A170T 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A010-01 12 5021428 5021428 G A KCNA1 Missense_Mutation p.R295H 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 5022845 5022845 A C KCNA1 3'UTR 0.35 TCGA-AA-A010-01 12 50399155 50399155 A G RACGAP1 Silent p.I103I 0.34 TCGA-AA-A010-01 12 50721122 50721122 G T FAM186A 3'UTR 0.27 TCGA-AA-A010-01 12 50745287 50745287 C T FAM186A Silent p.K1776K 0.32 TCGA-AA-A010-01 12 50790334 50790334 G T FAM186A 5'Flank 0.41 TCGA-AA-A010-01 12 50869472 50869472 A C LARP4 Missense_Mutation p.K667T 0.43 deleterious(0) possibly_damaging(0.752) TCGA-AA-A010-01 12 51068311 51068311 C A DIP2B Missense_Mutation p.S232Y 0.45 tolerated(0.7) possibly_damaging(0.707) TCGA-AA-A010-01 12 51084858 51084858 A G DIP2B Silent p.V526V 0.36 TCGA-AA-A010-01 12 51281198 51281198 T G TMPRSS12 Missense_Mutation p.F317V 0.35 tolerated(0.08) benign(0.004) TCGA-AA-A010-01 12 51323741 51323741 G A METTL7A Silent p.S181S 0.45 TCGA-AA-A010-01 12 51323849 51323849 C A METTL7A Missense_Mutation p.F217L 0.36 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 12 51449948 51449948 G T LETMD1 Missense_Mutation p.A241S 0.41 tolerated(0.64) benign(0.007) TCGA-AA-A010-01 12 51497452 51497452 C A TFCP2 Splice_Site p.X354_splice 0.32 TCGA-AA-A010-01 12 51497497 51497497 C T TFCP2 Missense_Mutation p.R339Q 0.36 tolerated(0.2) benign(0.034) TCGA-AA-A010-01 12 51511513 51511513 G A TFCP2 Nonsense_Mutation p.R98* 0.36 TCGA-AA-A010-01 12 5155214 5155214 G T KCNA5 3'UTR 0.35 TCGA-AA-A010-01 12 5155322 5155322 C A KCNA5 3'UTR 0.35 TCGA-AA-A010-01 12 51566172 51566172 C T TFCP2 Missense_Mutation p.E12K 0.34 tolerated_low_confidence(0.28) benign(0.014) TCGA-AA-A010-01 12 51696901 51696901 C T BIN2 Missense_Mutation p.D63N 0.31 deleterious(0) benign(0.173) TCGA-AA-A010-01 12 51758060 51758060 G A GALNT6 Silent p.I298I 0.39 TCGA-AA-A010-01 12 52188400 52188400 C T SCN8A Silent p.F1590F 0.06 TCGA-AA-A010-01 12 52374942 52374942 G A ACVR1B Missense_Mutation p.R257H 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 12 52385658 52385658 G T ACVR1B Nonsense_Mutation p.E466* 0.31 TCGA-AA-A010-01 12 52385715 52385715 C T ACVR1B Nonsense_Mutation p.R485* 0.42 TCGA-AA-A010-01 12 52777579 52777579 G A KRT84 Missense_Mutation p.R184W 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 12 52822434 52822434 G A KRT75 Silent p.L377L 0.32 TCGA-AA-A010-01 12 52825827 52825827 C T KRT75 Missense_Mutation p.R246H 0.36 tolerated(0.06) benign(0.344) TCGA-AA-A010-01 12 52886729 52886729 C T KRT6A Missense_Mutation p.G82S 0.38 tolerated(0.15) unknown(0) TCGA-AA-A010-01 12 52911411 52911411 C T KRT5 Missense_Mutation p.R352H 0.44 deleterious(0.03) benign(0.231) TCGA-AA-A010-01 12 53012087 53012087 G A KRT73 Silent p.G74G 0.36 TCGA-AA-A010-01 12 53070922 53070922 C A KRT1 Missense_Mutation p.R392I 0.45 deleterious(0) probably_damaging(0.943) TCGA-AA-A010-01 12 53091588 53091588 C T KRT77 Silent p.E212E 0.24 TCGA-AA-A010-01 12 53096752 53096752 T A KRT77 Missense_Mutation p.E156V 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 12 53344647 53344647 C T KRT18 Missense_Mutation p.A205V 0.47 tolerated(0.06) benign(0.247) TCGA-AA-A010-01 12 53647137 53647137 G A MFSD5 Missense_Mutation p.R280Q 0.39 tolerated(0.11) benign(0.05) TCGA-AA-A010-01 12 53818569 53818569 C T AMHR2 Silent p.G103G 0.43 TCGA-AA-A010-01 12 53880278 53880278 C A MAP3K12 Nonsense_Mutation p.E192* 0.35 TCGA-AA-A010-01 12 53910963 53910963 C T ATF7 Silent p.S470S 0.22 TCGA-AA-A010-01 12 54338957 54338957 G T HOXC13 Missense_Mutation p.V304L 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A010-01 12 54403416 54403416 C A HOXC8 Silent p.S116S 0.35 TCGA-AA-A010-01 12 54422622 54422622 C A HOXC6 Missense_Mutation p.S106Y 0.29 tolerated(0.07) possibly_damaging(0.559) TCGA-AA-A010-01 12 54575840 54575840 C T SMUG1 3'UTR 0.37 TCGA-AA-A010-01 12 54677662 54677662 T G HNRNPA1 Missense_Mutation p.F325C 0.34 deleterious(0.04) unknown(0) TCGA-AA-A010-01 12 54686853 54686853 C A NFE2 Nonsense_Mutation p.E143* 0.43 TCGA-AA-A010-01 12 54734302 54734302 G A COPZ1 Intron 0.33 TCGA-AA-A010-01 12 54756442 54756442 G T GPR84 3'UTR 0.39 TCGA-AA-A010-01 12 54757317 54757317 A G GPR84 Missense_Mutation p.S107P 0.28 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 54764433 54764433 A T ZNF385A Missense_Mutation p.S303T 0.34 tolerated(0.8) benign(0.025) TCGA-AA-A010-01 12 54792448 54792448 G A ITGA5 Missense_Mutation p.A959V 0.14 tolerated(0.49) benign(0.16) TCGA-AA-A010-01 12 54798246 54798246 C T ITGA5 Silent p.G477G 0.33 TCGA-AA-A010-01 12 54799666 54799666 G T ITGA5 Missense_Mutation p.F317L 0.29 tolerated(0.1) benign(0.038) TCGA-AA-A010-01 12 54812898 54812898 G A ITGA5 Silent p.L29L 0.34 TCGA-AA-A010-01 12 55252166 55252166 G T MUCL1 3'UTR 0.54 TCGA-AA-A010-01 12 55356356 55356356 G T TESPA1 Silent p.L442L 0.39 TCGA-AA-A010-01 12 55420591 55420591 T G NEUROD4 Missense_Mutation p.L123R 0.48 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 55421819 55421819 G T NEUROD4 3'UTR 0.34 TCGA-AA-A010-01 12 55614806 55614806 G T OR10A7 5'Flank 0.29 TCGA-AA-A010-01 12 55688102 55688102 C A OR6C6 Missense_Mutation p.K305N 0.30 deleterious_low_confidence(0.03) benign(0.008) TCGA-AA-A010-01 12 55714458 55714458 C A OR6C1 Silent p.I25I 0.31 TCGA-AA-A010-01 12 55714734 55714734 C A OR6C1 Silent p.S117S 0.39 TCGA-AA-A010-01 12 55863220 55863220 C T OR6C70 Missense_Mutation p.A235T 0.29 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AA-A010-01 12 55863898 55863898 C A OR6C70 Nonsense_Mutation p.E9* 0.26 TCGA-AA-A010-01 12 56090795 56090795 C T ITGA7 Missense_Mutation p.R546H 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 56113310 56113310 C T BLOC1S1 Missense_Mutation p.R127W 0.28 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 12 56120015 56120015 C A CD63 Missense_Mutation p.D153Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 12 56221763 56221763 C T DNAJC14 Missense_Mutation p.R227Q 0.39 deleterious(0) probably_damaging(0.964) TCGA-AA-A010-01 12 56435787 56435787 G T RPS26 5'UTR 0.21 TCGA-AA-A010-01 12 56482437 56482437 A G ERBB3 Missense_Mutation p.K329E 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 56527871 56527871 C T ESYT1 Missense_Mutation p.T494I 0.40 tolerated(0.27) benign(0) TCGA-AA-A010-01 12 56618577 56618577 G T NABP2 5'UTR 0.41 TCGA-AA-A010-01 12 56647539 56647539 G A ANKRD52 Missense_Mutation p.R318C 0.39 deleterious(0) probably_damaging(0.934) TCGA-AA-A010-01 12 56648438 56648438 C T ANKRD52 Missense_Mutation p.G206D 0.39 deleterious(0.02) benign(0.399) TCGA-AA-A010-01 12 56669950 56669950 G A CS Silent p.I206I 0.34 TCGA-AA-A010-01 12 56816760 56816760 G A TIMELESS Missense_Mutation p.A770V 0.33 deleterious(0) possibly_damaging(0.861) TCGA-AA-A010-01 12 56993605 56993605 T C BAZ2A Missense_Mutation p.N1687D 0.42 tolerated(0.26) possibly_damaging(0.737) TCGA-AA-A010-01 12 56993854 56993854 C T BAZ2A Missense_Mutation p.R1642H 0.39 deleterious(0) probably_damaging(0.984) TCGA-AA-A010-01 12 57009038 57009038 C A BAZ2A Nonsense_Mutation p.E166* 0.42 TCGA-AA-A010-01 12 57167642 57167642 G A HSD17B6 Nonsense_Mutation p.W2* 0.33 TCGA-AA-A010-01 12 57167655 57167655 G A HSD17B6 Missense_Mutation p.A7T 0.31 tolerated(0.1) benign(0.053) TCGA-AA-A010-01 12 57430591 57430591 C T MYO1A Missense_Mutation p.V747M 0.34 deleterious(0.02) possibly_damaging(0.631) TCGA-AA-A010-01 12 57430765 57430765 C A MYO1A Missense_Mutation p.K722N 0.35 tolerated(0.18) benign(0.006) TCGA-AA-A010-01 12 57433007 57433007 G A MYO1A Missense_Mutation p.L441F 0.31 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 12 57500575 57500575 C A STAT6 Nonsense_Mutation p.E127* 0.36 TCGA-AA-A010-01 12 57538864 57538864 C A LRP1 Silent p.R186R 0.49 TCGA-AA-A010-01 12 57567630 57567630 G T LRP1 Missense_Mutation p.E1138D 0.33 benign(0.029) TCGA-AA-A010-01 12 57569386 57569386 C A LRP1 Missense_Mutation p.L1231I 0.37 possibly_damaging(0.676) TCGA-AA-A010-01 12 57579532 57579532 G A LRP1 Missense_Mutation p.E2228K 0.37 possibly_damaging(0.572) TCGA-AA-A010-01 12 57587368 57587368 G T LRP1 Missense_Mutation p.K2568N 0.37 benign(0.083) TCGA-AA-A010-01 12 57589786 57589786 G T LRP1 Nonsense_Mutation p.E2901* 0.40 TCGA-AA-A010-01 12 57599229 57599229 T C LRP1 Missense_Mutation p.S3811P 0.31 benign(0) TCGA-AA-A010-01 12 57619568 57619568 C T NXPH4 3'UTR 0.33 TCGA-AA-A010-01 12 57648623 57648623 C T R3HDM2 Missense_Mutation p.R955H 0.36 tolerated(0.14) benign(0.001) TCGA-AA-A010-01 12 57828968 57828968 G A INHBC Missense_Mutation p.S100N 0.29 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 12 57857571 57857571 G T GLI1 Nonsense_Mutation p.E33* 0.20 TCGA-AA-A010-01 12 57865870 57865870 G T GLI1 3'UTR 0.32 TCGA-AA-A010-01 12 57873268 57873268 A G ARHGAP9 Intron 0.21 TCGA-AA-A010-01 12 57882859 57882859 G A MARS Missense_Mutation p.G56D 0.43 deleterious(0.03) benign(0.078) TCGA-AA-A010-01 12 57921362 57921362 G A MBD6 Missense_Mutation p.A719T 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-A010-01 12 57922116 57922116 C T MBD6 Missense_Mutation p.L865F 0.41 tolerated_low_confidence(0.43) probably_damaging(0.943) TCGA-AA-A010-01 12 57944170 57944170 G T KIF5A Missense_Mutation p.S39I 0.28 deleterious(0.01) benign(0.224) TCGA-AA-A010-01 12 57962833 57962833 G A KIF5A Missense_Mutation p.A268T 0.41 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 12 57992945 57992945 G A PIP4K2C Missense_Mutation p.R204H 0.40 deleterious(0.03) possibly_damaging(0.479) TCGA-AA-A010-01 12 58163726 58163726 C T METTL1 Silent p.P96P 0.47 TCGA-AA-A010-01 12 58345601 58345601 G A XRCC6BP1 Missense_Mutation p.E126K 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 58347413 58347413 G T XRCC6BP1 Missense_Mutation p.D160Y 0.41 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 12 59268054 59268054 C A LRIG3 Missense_Mutation p.K966N 0.39 deleterious_low_confidence(0.02) benign(0.009) TCGA-AA-A010-01 12 59281576 59281576 C A LRIG3 Missense_Mutation p.K362N 0.42 tolerated(0.11) benign(0.014) TCGA-AA-A010-01 12 59282227 59282227 C A LRIG3 Missense_Mutation p.E277D 0.31 tolerated(0.06) benign(0.139) TCGA-AA-A010-01 12 60169249 60169249 T C SLC16A7 Silent p.P391P 0.33 TCGA-AA-A010-01 12 60173227 60173227 G T SLC16A7 Nonsense_Mutation p.E402* 0.29 TCGA-AA-A010-01 12 6085383 6085383 C A VWF Missense_Mutation p.W2444L 0.36 deleterious(0) possibly_damaging(0.876) TCGA-AA-A010-01 12 6101139 6101139 C T VWF Missense_Mutation p.G2215D 0.33 tolerated(0.08) probably_damaging(0.989) TCGA-AA-A010-01 12 62715332 62715332 T G USP15 Missense_Mutation p.F188C 0.40 tolerated(0.2) probably_damaging(0.962) TCGA-AA-A010-01 12 62790140 62790140 C T USP15 Missense_Mutation p.A879V 0.38 deleterious(0) probably_damaging(0.985) TCGA-AA-A010-01 12 62887705 62887705 G T MON2 Missense_Mutation p.E62D 0.35 tolerated(0.27) possibly_damaging(0.503) TCGA-AA-A010-01 12 62929435 62929435 C A MON2 Missense_Mutation p.H616N 0.36 tolerated(0.09) benign(0.276) TCGA-AA-A010-01 12 62938743 62938743 A C MON2 Missense_Mutation p.K844N 0.40 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 12 63541222 63541222 G A AVPR1A Nonsense_Mutation p.R392* 0.34 TCGA-AA-A010-01 12 64485111 64485111 C T SRGAP1 Nonsense_Mutation p.Q498* 0.38 TCGA-AA-A010-01 12 6451063 6451063 G A TNFRSF1A 5'UTR 0.45 TCGA-AA-A010-01 12 6484110 6484110 C T SCNN1A Missense_Mutation p.G6D 0.44 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AA-A010-01 12 64854048 64854048 T G TBK1 Missense_Mutation p.F56C 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 64858148 64858148 T G TBK1 Missense_Mutation p.F88C 0.32 deleterious(0) probably_damaging(0.956) TCGA-AA-A010-01 12 64889513 64889513 A G TBK1 Missense_Mutation p.T560A 0.29 tolerated(0.49) benign(0.075) TCGA-AA-A010-01 12 64889541 64889541 A G TBK1 Missense_Mutation p.D569G 0.55 tolerated(0.09) probably_damaging(0.939) TCGA-AA-A010-01 12 64890975 64890975 C T TBK1 Missense_Mutation p.S632L 0.34 tolerated(0.32) benign(0.079) TCGA-AA-A010-01 12 65564296 65564296 A C LEMD3 Missense_Mutation p.E307A 0.44 tolerated_low_confidence(0.28) benign(0.254) TCGA-AA-A010-01 12 65632292 65632292 C A LEMD3 Missense_Mutation p.P569H 0.41 deleterious(0.01) possibly_damaging(0.903) TCGA-AA-A010-01 12 6632016 6632016 C A NCAPD2 Missense_Mutation p.F659L 0.39 deleterious(0) probably_damaging(0.96) TCGA-AA-A010-01 12 666022 666022 C T B4GALNT3 Silent p.F790F 0.35 TCGA-AA-A010-01 12 66638918 66638918 A G IRAK3 Missense_Mutation p.D397G 0.41 deleterious(0.03) possibly_damaging(0.876) TCGA-AA-A010-01 12 6670878 6670878 G A NOP2 Missense_Mutation p.R420W 0.40 deleterious(0.01) benign(0.235) TCGA-AA-A010-01 12 6709475 6709475 G T CHD4 Missense_Mutation p.L384M 0.41 deleterious(0.02) benign(0.337) TCGA-AA-A010-01 12 67698920 67698920 C T CAND1 Missense_Mutation p.S491L 0.19 deleterious(0) probably_damaging(0.934) TCGA-AA-A010-01 12 68054019 68054019 A G DYRK2 3'UTR 0.39 TCGA-AA-A010-01 12 68551837 68551837 G T IFNG Silent p.S74S 0.33 TCGA-AA-A010-01 12 68618944 68618944 C A IL26 Missense_Mutation p.Q116H 0.29 tolerated(0.1) probably_damaging(0.999) TCGA-AA-A010-01 12 6909588 6909588 C T CD4 Silent p.N55N 0.37 TCGA-AA-A010-01 12 69140262 69140262 T G SLC35E3 Missense_Mutation p.I35M 0.36 deleterious(0.05) benign(0.27) TCGA-AA-A010-01 12 69222657 69222657 G T MDM2 Missense_Mutation p.E210D 0.40 tolerated(0.3) probably_damaging(0.979) TCGA-AA-A010-01 12 69233505 69233505 T C MDM2 Missense_Mutation p.V457A 0.37 deleterious(0) probably_damaging(0.933) TCGA-AA-A010-01 12 6927642 6927642 C T CD4 Silent p.G404G 0.23 TCGA-AA-A010-01 12 6948199 6948199 C A LEPREL2 Silent p.A646A 0.39 TCGA-AA-A010-01 12 6952590 6952590 T G GNB3 Missense_Mutation p.F111V 0.36 tolerated(0.19) benign(0.015) TCGA-AA-A010-01 12 69653866 69653866 C A CPSF6 Missense_Mutation p.S453Y 0.41 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 12 6972378 6972378 C T USP5 Silent p.L597L 0.45 TCGA-AA-A010-01 12 6974000 6974000 T C USP5 Missense_Mutation p.S787P 0.08 tolerated(0.11) possibly_damaging(0.718) TCGA-AA-A010-01 12 7066907 7066907 G A PTPN6 Missense_Mutation p.E389K 0.31 tolerated(0.06) possibly_damaging(0.523) TCGA-AA-A010-01 12 70990064 70990064 C T PTPRB Silent p.T341T 0.35 TCGA-AA-A010-01 12 72005623 72005623 T G ZFC3H1 Missense_Mutation p.K1891T 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-AA-A010-01 12 72025925 72025925 T C ZFC3H1 Missense_Mutation p.T1063A 0.40 tolerated(0.25) probably_damaging(0.98) TCGA-AA-A010-01 12 72068037 72068037 A C THAP2 Missense_Mutation p.K42N 0.33 tolerated(0.48) probably_damaging(0.997) TCGA-AA-A010-01 12 72091276 72091276 C A TMEM19 Missense_Mutation p.S200Y 0.35 deleterious(0.01) benign(0.045) TCGA-AA-A010-01 12 72425355 72425355 A C TPH2 Silent p.T451T 0.34 TCGA-AA-A010-01 12 72956764 72956764 G T TRHDE Missense_Mutation p.Q617H 0.32 deleterious(0.01) benign(0.178) TCGA-AA-A010-01 12 7362366 7362366 G A PEX5 Missense_Mutation p.E565K 0.27 deleterious(0.01) possibly_damaging(0.804) TCGA-AA-A010-01 12 7473344 7473344 G A ACSM4 Silent p.T315T 0.28 TCGA-AA-A010-01 12 7475860 7475860 G T ACSM4 Nonsense_Mutation p.E386* 0.34 TCGA-AA-A010-01 12 7520765 7520765 G T CD163L1 Silent p.I1367I 0.38 TCGA-AA-A010-01 12 7527952 7527952 G A CD163L1 Silent p.L976L 0.34 TCGA-AA-A010-01 12 75601277 75601277 C T KCNC2 Missense_Mutation p.E163K 0.42 tolerated(0.07) possibly_damaging(0.893) TCGA-AA-A010-01 12 75892501 75892501 G A GLIPR1 Splice_Site p.X216_splice 0.35 TCGA-AA-A010-01 12 76740198 76740198 G A BBS10 Silent p.L523L 0.36 TCGA-AA-A010-01 12 77257008 77257008 C T CSRP2 Missense_Mutation p.A77T 0.37 deleterious(0) benign(0.4) TCGA-AA-A010-01 12 77259946 77259946 C T CSRP2 Missense_Mutation p.R32H 0.30 deleterious(0) possibly_damaging(0.505) TCGA-AA-A010-01 12 77421726 77421726 T G E2F7 Missense_Mutation p.K693Q 0.36 tolerated(0.12) benign(0.007) TCGA-AA-A010-01 12 77427636 77427636 C A E2F7 Splice_Site p.X437_splice 0.34 TCGA-AA-A010-01 12 7805040 7805040 C T APOBEC1 Missense_Mutation p.A146T 0.34 tolerated(0.4) benign(0.007) TCGA-AA-A010-01 12 78400873 78400873 A C NAV3 Missense_Mutation p.S519R 0.40 deleterious(0.03) possibly_damaging(0.675) TCGA-AA-A010-01 12 78583830 78583830 G A NAV3 Missense_Mutation p.R2019K 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 12 78592401 78592401 A G NAV3 Missense_Mutation p.T2133A 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 12 78593173 78593173 C T NAV3 Nonsense_Mutation p.R2171* 0.47 TCGA-AA-A010-01 12 78593255 78593255 C T NAV3 Missense_Mutation p.T2198M 0.43 deleterious(0.01) benign(0.025) TCGA-AA-A010-01 12 7894117 7894117 A C CLEC4C Missense_Mutation p.N45K 0.41 tolerated(0.57) possibly_damaging(0.451) TCGA-AA-A010-01 12 7922873 7922873 C A NANOGNB Missense_Mutation p.L133I 0.36 tolerated(0.13) probably_damaging(0.939) TCGA-AA-A010-01 12 79679684 79679684 A - SYT1 Frame_Shift_Del p.G97Efs*8 0.26 TCGA-AA-A010-01 12 7973851 7973851 G A SLC2A14 Missense_Mutation p.A335V 0.36 tolerated(0.86) benign(0.042) TCGA-AA-A010-01 12 8048187 8048187 A G NANOGP1 RNA 0.36 TCGA-AA-A010-01 12 8051237 8051237 A C NANOGP1 RNA 0.30 TCGA-AA-A010-01 12 80714207 80714207 G T OTOGL Missense_Mutation p.A1261S 0.41 tolerated(1) benign(0.01) TCGA-AA-A010-01 12 80761466 80761466 G A OTOGL Missense_Mutation p.G2144S 0.62 tolerated(0.26) possibly_damaging(0.898) TCGA-AA-A010-01 12 80899820 80899820 G T PTPRQ Nonsense_Mutation p.E760* 0.33 TCGA-AA-A010-01 12 80904122 80904122 G T PTPRQ Missense_Mutation p.D856Y 0.42 tolerated(0.66) benign(0.142) TCGA-AA-A010-01 12 80904191 80904191 G T PTPRQ Nonsense_Mutation p.G879* 0.36 TCGA-AA-A010-01 12 80936106 80936106 T C PTPRQ Silent p.G1224G 0.45 TCGA-AA-A010-01 12 81545487 81545487 T G ACSS3 Intron 0.41 TCGA-AA-A010-01 12 81688639 81688639 G T PPFIA2 Missense_Mutation p.P967H 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A010-01 12 81777951 81777951 T G PPFIA2 Missense_Mutation p.K279Q 0.45 tolerated(0.07) probably_damaging(0.94) TCGA-AA-A010-01 12 8192503 8192503 G T FOXJ2 Missense_Mutation p.E25D 0.36 deleterious(0.02) probably_damaging(0.952) TCGA-AA-A010-01 12 83081417 83081417 A C TMTC2 Missense_Mutation p.T18P 0.33 deleterious(0.01) possibly_damaging(0.812) TCGA-AA-A010-01 12 85267015 85267015 A C SLC6A15 Missense_Mutation p.F320L 0.42 deleterious(0.03) probably_damaging(0.927) TCGA-AA-A010-01 12 85270387 85270387 C A SLC6A15 Splice_Site p.X253_splice 0.24 TCGA-AA-A010-01 12 85285638 85285638 G T SLC6A15 Missense_Mutation p.P88T 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 12 85450212 85450212 G T LRRIQ1 Missense_Mutation p.E547D 0.32 tolerated(0.09) benign(0.055) TCGA-AA-A010-01 12 85450933 85450933 C T LRRIQ1 Nonsense_Mutation p.R788* 0.35 TCGA-AA-A010-01 12 85492663 85492663 C A LRRIQ1 Missense_Mutation p.L1034I 0.37 deleterious(0.03) benign(0.055) TCGA-AA-A010-01 12 85497795 85497795 G A LRRIQ1 Missense_Mutation p.V1075I 0.42 tolerated(0.35) benign(0.013) TCGA-AA-A010-01 12 85517983 85517983 G A LRRIQ1 Silent p.Q1231Q 0.29 TCGA-AA-A010-01 12 85546925 85546925 T C LRRIQ1 Splice_Site p.X1514_splice 0.38 TCGA-AA-A010-01 12 86198391 86198391 T G RASSF9 3'UTR 0.47 TCGA-AA-A010-01 12 86373821 86373821 C T MGAT4C Missense_Mutation p.R228Q 0.35 tolerated(0.41) benign(0.003) TCGA-AA-A010-01 12 86373822 86373822 G A MGAT4C Nonsense_Mutation p.R228* 0.41 TCGA-AA-A010-01 12 8757408 8757408 G T AICDA Missense_Mutation p.L180I 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 12 8800751 8800751 C T MFAP5 Missense_Mutation p.R153H 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 12 8803141 8803141 G T MFAP5 Missense_Mutation p.H98N 0.33 deleterious(0.04) benign(0.023) TCGA-AA-A010-01 12 8813459 8813459 C A MFAP5 Missense_Mutation p.D32Y 0.30 deleterious(0) probably_damaging(0.963) TCGA-AA-A010-01 12 88487605 88487605 C T CEP290 Missense_Mutation p.R1084Q 0.39 benign(0.101) TCGA-AA-A010-01 12 88533329 88533329 C A CEP290 Nonsense_Mutation p.E65* 0.34 TCGA-AA-A010-01 12 8975955 8975955 C A A2ML1 Silent p.S80S 0.31 TCGA-AA-A010-01 12 8988858 8988858 G A A2ML1 Silent p.P217P 0.36 TCGA-AA-A010-01 12 90015367 90015367 T C ATP2B1 Missense_Mutation p.T516A 0.34 tolerated(0.39) benign(0.075) TCGA-AA-A010-01 12 90035973 90035973 C T ATP2B1 Missense_Mutation p.G123D 0.31 deleterious(0.02) possibly_damaging(0.865) TCGA-AA-A010-01 12 9004868 9004868 C A A2ML1 Silent p.T842T 0.25 TCGA-AA-A010-01 12 9020926 9020926 G A A2ML1 Missense_Mutation p.R1345Q 0.32 tolerated(0.08) benign(0.007) TCGA-AA-A010-01 12 91502240 91502240 C A LUM Nonsense_Mutation p.E173* 0.39 TCGA-AA-A010-01 12 91545438 91545438 T C DCN Missense_Mutation p.Y293C 0.31 deleterious(0) probably_damaging(0.948) TCGA-AA-A010-01 12 9258856 9258856 T C A2M Silent p.R360R 0.40 TCGA-AA-A010-01 12 9309952 9309952 C A PZP Splice_Site p.X1124_splice 0.37 TCGA-AA-A010-01 12 93171426 93171426 C A EEA1 Nonsense_Mutation p.E1303* 0.35 TCGA-AA-A010-01 12 9317884 9317884 C T PZP Missense_Mutation p.E780K 0.46 tolerated(0.72) benign(0.005) TCGA-AA-A010-01 12 93202825 93202825 T G EEA1 Missense_Mutation p.E769D 0.34 tolerated(0.05) benign(0.027) TCGA-AA-A010-01 12 93246068 93246068 T C EEA1 Missense_Mutation p.I175M 0.48 tolerated(0.16) benign(0.252) TCGA-AA-A010-01 12 93247690 93247690 C T EEA1 Splice_Site p.X136_splice 0.36 TCGA-AA-A010-01 12 9349279 9349279 A G PZP Silent p.L290L 0.48 TCGA-AA-A010-01 12 9353540 9353540 T C PZP Silent p.V206V 0.36 TCGA-AA-A010-01 12 94641681 94641681 C A PLXNC1 Silent p.V797V 0.35 TCGA-AA-A010-01 12 94702610 94702610 T C CCDC41 Silent p.E695E 0.36 TCGA-AA-A010-01 12 95927486 95927486 T G USP44 Missense_Mutation p.K183Q 0.35 tolerated(0.16) benign(0.14) TCGA-AA-A010-01 12 96181127 96181127 C T NTN4 Missense_Mutation p.E59K 0.37 deleterious(0) probably_damaging(0.981) TCGA-AA-A010-01 12 96273567 96273567 C A CCDC38 Missense_Mutation p.A333S 0.61 deleterious(0.01) benign(0.017) TCGA-AA-A010-01 12 96330289 96330289 T G CCDC38 5'UTR 0.37 TCGA-AA-A010-01 12 96356153 96356153 G A AMDHD1 Silent p.A278A 0.26 TCGA-AA-A010-01 12 96370451 96370451 C T HAL Missense_Mutation p.G563D 0.37 deleterious(0) probably_damaging(0.984) TCGA-AA-A010-01 12 96394717 96394717 G A LTA4H 3'UTR 0.36 TCGA-AA-A010-01 12 96707233 96707233 C A CDK17 Splice_Site p.X95_splice 0.27 TCGA-AA-A010-01 12 96717748 96717748 C A CDK17 Missense_Mutation p.M87I 0.28 tolerated_low_confidence(0.42) benign(0) TCGA-AA-A010-01 12 97345254 97345254 T G NEDD1 Missense_Mutation p.I626S 0.24 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 12 97957670 97957670 A G MIR135A2 RNA 0.43 TCGA-AA-A010-01 12 98931318 98931318 A G TMPO 3'Flank 0.35 TCGA-AA-A010-01 12 98941582 98941582 C T TMPO Silent p.N328N 0.40 TCGA-AA-A010-01 12 99019638 99019638 G T IKBIP 3'UTR 0.27 TCGA-AA-A010-01 12 99056319 99056319 G T APAF1 Missense_Mutation p.D266Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 12 99060074 99060074 G A APAF1 Missense_Mutation p.R434H 0.30 tolerated(0.54) benign(0) TCGA-AA-A010-01 12 99139510 99139510 G A ANKS1B Intron 0.41 TCGA-AA-A010-01 12 9997020 9997020 C A KLRF1 Missense_Mutation p.F198L 0.38 deleterious(0) benign(0.32) TCGA-AA-A010-01 13 100635372 100635372 A G ZIC2 Missense_Mutation p.I352V 0.33 deleterious(0.02) benign(0.002) TCGA-AA-A010-01 13 101714452 101714452 G A NALCN Silent p.S1541S 0.32 TCGA-AA-A010-01 13 101762992 101762992 G T NALCN Missense_Mutation p.S781Y 0.40 tolerated(0.06) benign(0.01) TCGA-AA-A010-01 13 101997705 101997705 G A NALCN Silent p.Y237Y 0.31 TCGA-AA-A010-01 13 102368030 102368030 C A ITGBL1 3'UTR 0.33 TCGA-AA-A010-01 13 103289539 103289539 A C TPP2 Missense_Mutation p.N596H 0.43 tolerated(0.1) probably_damaging(0.931) TCGA-AA-A010-01 13 103309488 103309488 A C TPP2 Missense_Mutation p.E1012A 0.41 tolerated(0.22) benign(0.012) TCGA-AA-A010-01 13 103384726 103384726 C A CCDC168 Missense_Mutation p.Q1478H 0.36 deleterious(0.04) unknown(0) TCGA-AA-A010-01 13 103386102 103386102 A C CCDC168 Missense_Mutation p.L1020V 0.32 tolerated(0.27) possibly_damaging(0.567) TCGA-AA-A010-01 13 103386756 103386756 A C CCDC168 Missense_Mutation p.F802V 0.37 tolerated(0.61) benign(0.001) TCGA-AA-A010-01 13 103388884 103388884 G A CCDC168 Silent p.S92S 0.36 TCGA-AA-A010-01 13 103395426 103395426 G A LINC00283 RNA 0.36 TCGA-AA-A010-01 13 103396684 103396685 - TGTAAG LINC00283 RNA 0.38 TCGA-AA-A010-01 13 103440228 103440228 G T KDELC1 Missense_Mutation p.L447I 0.29 deleterious(0) probably_damaging(0.942) TCGA-AA-A010-01 13 106124927 106124927 A C DAOA Missense_Mutation p.K58N 0.37 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-AA-A010-01 13 106142252 106142252 T G DAOA Missense_Mutation p.L95R 0.45 tolerated_low_confidence(0.08) possibly_damaging(0.883) TCGA-AA-A010-01 13 106142411 106142411 C A DAOA Missense_Mutation p.T148N 0.45 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-AA-A010-01 13 108518583 108518583 C A FAM155A Missense_Mutation p.R121I 0.29 tolerated_low_confidence(0.17) probably_damaging(0.996) TCGA-AA-A010-01 13 108861206 108861206 G A LIG4 Missense_Mutation p.S804F 0.35 tolerated(0.33) benign(0.001) TCGA-AA-A010-01 13 108863037 108863037 A C LIG4 Missense_Mutation p.L194V 0.36 tolerated(0.11) possibly_damaging(0.681) TCGA-AA-A010-01 13 108863124 108863124 C A LIG4 Missense_Mutation p.D165Y 0.32 deleterious(0.01) possibly_damaging(0.886) TCGA-AA-A010-01 13 109318376 109318376 G T MYO16 Missense_Mutation p.E35D 0.40 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 13 109562396 109562396 A T MYO16 Missense_Mutation p.Q586L 0.31 tolerated(0.08) benign(0.02) TCGA-AA-A010-01 13 110827689 110827689 T A COL4A1 Missense_Mutation p.K1025I 0.30 probably_damaging(1) TCGA-AA-A010-01 13 110830279 110830279 C A COL4A1 Splice_Site p.X876_splice 0.24 TCGA-AA-A010-01 13 111156334 111156334 G T COL4A2 Nonsense_Mutation p.E1427* 0.41 TCGA-AA-A010-01 13 111293866 111293866 C A CARS2 3'UTR 0.35 TCGA-AA-A010-01 13 111371944 111371944 G A ING1 Missense_Mutation p.D312N 0.40 tolerated(0.06) probably_damaging(0.93) TCGA-AA-A010-01 13 113047352 113047352 C T SPACA7 Missense_Mutation p.P38S 0.41 tolerated(0.89) benign(0.047) TCGA-AA-A010-01 13 113143918 113143918 G A TUBGCP3 Nonsense_Mutation p.R848* 0.31 TCGA-AA-A010-01 13 113496623 113496623 C A ATP11A Missense_Mutation p.S580Y 0.41 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 13 113678990 113678990 A C MCF2L Missense_Mutation p.T66P 0.42 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 13 113719264 113719264 C T MCF2L Silent p.F207F 0.36 TCGA-AA-A010-01 13 113897294 113897294 G A CUL4A Missense_Mutation p.A350T 0.33 tolerated(1) benign(0.002) TCGA-AA-A010-01 13 113999223 113999223 C A GRTP1 Nonsense_Mutation p.E173* 0.38 TCGA-AA-A010-01 13 114188628 114188628 C A TMCO3 Intron 0.34 TCGA-AA-A010-01 13 114204079 114204079 C T TMCO3 3'UTR 0.48 TCGA-AA-A010-01 13 114286038 114286038 A C TFDP1 Missense_Mutation p.D96A 0.37 tolerated(0.2) benign(0.097) TCGA-AA-A010-01 13 114306040 114306040 G A ATP4B Silent p.I186I 0.33 TCGA-AA-A010-01 13 114322304 114322304 C T GRK1 Silent p.F201F 0.40 TCGA-AA-A010-01 13 114502337 114502337 G T TMEM255B Missense_Mutation p.R123I 0.34 deleterious(0.03) possibly_damaging(0.847) TCGA-AA-A010-01 13 114549525 114549526 - T GAS6 Frame_Shift_Ins p.N106Kfs*13 0.27 TCGA-AA-A010-01 13 115047585 115047585 C A UPF3A Missense_Mutation p.F99L 0.30 tolerated(0.07) benign(0.169) TCGA-AA-A010-01 13 19747922 19747922 A G TUBA3C 3'UTR 0.41 TCGA-AA-A010-01 13 19753677 19753677 C T TUBA3C Silent p.G10G 0.34 TCGA-AA-A010-01 13 20039660 20039660 C A TPTE2 Missense_Mutation p.R186I 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 13 20039687 20039687 C T TPTE2 Missense_Mutation p.R177Q 0.29 tolerated(0.09) possibly_damaging(0.826) TCGA-AA-A010-01 13 20067596 20067596 C T TPTE2 Silent p.A19A 0.36 TCGA-AA-A010-01 13 20246100 20246100 C A MPHOSPH8 3'UTR 0.37 TCGA-AA-A010-01 13 20304418 20304418 C T PSPC1 Silent p.R373R 0.38 TCGA-AA-A010-01 13 20398911 20398911 T C ZMYM5 Silent p.E572E 0.37 TCGA-AA-A010-01 13 21303263 21303263 G A N6AMT2 Missense_Mutation p.R201C 0.37 tolerated(0.24) benign(0.209) TCGA-AA-A010-01 13 21370919 21370919 A G XPO4 Missense_Mutation p.I867T 0.37 deleterious(0.01) possibly_damaging(0.621) TCGA-AA-A010-01 13 21383304 21383304 G A XPO4 Nonsense_Mutation p.R471* 0.31 TCGA-AA-A010-01 13 21549231 21549231 G A LATS2 Silent p.S1015S 0.46 TCGA-AA-A010-01 13 21875641 21875641 A C LINC00422 3'Flank 0.36 TCGA-AA-A010-01 13 22113511 22113511 G A MICU2 Silent p.I132I 0.37 TCGA-AA-A010-01 13 22245885 22245885 G T FGF9 5'UTR 0.58 TCGA-AA-A010-01 13 23904641 23904641 G T SACS Missense_Mutation p.F4458L 0.34 probably_damaging(0.976) TCGA-AA-A010-01 13 23906239 23906239 C T SACS Missense_Mutation p.D3926N 0.42 probably_damaging(0.99) TCGA-AA-A010-01 13 23907689 23907689 C A SACS Missense_Mutation p.E3442D 0.42 benign(0.001) TCGA-AA-A010-01 13 23910661 23910661 A C SACS Missense_Mutation p.L2452V 0.38 benign(0.012) TCGA-AA-A010-01 13 23912323 23912323 C A SACS Nonsense_Mutation p.E1898* 0.38 TCGA-AA-A010-01 13 23915264 23915264 C A SACS Missense_Mutation p.E917D 0.27 probably_damaging(0.98) TCGA-AA-A010-01 13 23915266 23915266 C A SACS Nonsense_Mutation p.E917* 0.30 TCGA-AA-A010-01 13 23915297 23915297 G T SACS Missense_Mutation p.F906L 0.43 benign(0.141) TCGA-AA-A010-01 13 23929431 23929431 G T SACS Missense_Mutation p.F440L 0.36 probably_damaging(0.983) TCGA-AA-A010-01 13 24243310 24243310 G T TNFRSF19 3'UTR 0.39 TCGA-AA-A010-01 13 24304474 24304474 T C MIPEP 3'UTR 0.20 TCGA-AA-A010-01 13 24515813 24515813 T C ANKRD20A19P RNA 0.43 TCGA-AA-A010-01 13 25009293 25009293 G A PARP4 Missense_Mutation p.P1329L 0.43 tolerated(0.55) benign(0) TCGA-AA-A010-01 13 25016101 25016101 C A PARP4 Missense_Mutation p.E1183D 0.42 tolerated(0.51) benign(0.001) TCGA-AA-A010-01 13 25016771 25016771 G T PARP4 Missense_Mutation p.S1167Y 0.28 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 13 25075835 25075835 C A PARP4 Missense_Mutation p.K90N 0.27 tolerated(0.34) benign(0.01) TCGA-AA-A010-01 13 25265365 25265365 G A ATP12A Missense_Mutation p.E355K 0.38 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 13 25281302 25281302 G A ATP12A Missense_Mutation p.A777T 0.37 deleterious(0.02) benign(0.156) TCGA-AA-A010-01 13 25448298 25448298 G A RNF17 Silent p.A1498A 0.29 TCGA-AA-A010-01 13 25457202 25457202 G T CENPJ 3'UTR 0.26 TCGA-AA-A010-01 13 25486888 25486888 T G CENPJ Missense_Mutation p.K92N 0.38 tolerated(0.2) benign(0.004) TCGA-AA-A010-01 13 25487030 25487030 C T CENPJ Missense_Mutation p.R45Q 0.49 tolerated(0.84) benign(0.001) TCGA-AA-A010-01 13 25670302 25670302 C T PABPC3 5'UTR 0.39 TCGA-AA-A010-01 13 25670333 25670333 G A PABPC3 5'UTR 0.37 TCGA-AA-A010-01 13 25671398 25671398 C T PABPC3 Silent p.N354N 0.38 TCGA-AA-A010-01 13 25671766 25671766 C T PABPC3 Missense_Mutation p.A477V 0.36 tolerated(0.23) benign(0.002) TCGA-AA-A010-01 13 25671920 25671920 A G PABPC3 Silent p.Q528Q 0.44 TCGA-AA-A010-01 13 25672426 25672426 A G PABPC3 3'UTR 0.52 TCGA-AA-A010-01 13 25672690 25672690 T G PABPC3 3'UTR 0.31 TCGA-AA-A010-01 13 25883390 25883390 G A NUPL1 Missense_Mutation p.A86T 0.32 tolerated(0.24) benign(0.165) TCGA-AA-A010-01 13 26129135 26129135 G A ATP8A2 Missense_Mutation p.D398N 0.24 deleterious(0) probably_damaging(0.975) TCGA-AA-A010-01 13 26154071 26154071 G A ATP8A2 Missense_Mutation p.E665K 0.34 deleterious(0.01) possibly_damaging(0.652) TCGA-AA-A010-01 13 26542790 26542790 C T ATP8A2 Missense_Mutation p.A1117V 0.36 tolerated(0.66) benign(0.002) TCGA-AA-A010-01 13 26788658 26788658 C T RNF6 Missense_Mutation p.R454Q 0.34 tolerated(0.1) benign(0.029) TCGA-AA-A010-01 13 26789159 26789159 C A RNF6 Missense_Mutation p.S287I 0.42 deleterious(0) benign(0.117) TCGA-AA-A010-01 13 26792691 26792691 T G RNF6 Missense_Mutation p.Q82H 0.32 tolerated(0.21) possibly_damaging(0.809) TCGA-AA-A010-01 13 27333399 27333399 C T GPR12 Missense_Mutation p.S189N 0.39 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 13 27645234 27645234 A C USP12 Missense_Mutation p.L329V 0.38 tolerated(0.08) possibly_damaging(0.774) TCGA-AA-A010-01 13 27649333 27649333 A G USP12 Silent p.C309C 0.32 TCGA-AA-A010-01 13 28009314 28009314 G T GTF3A Missense_Mutation p.K306N 0.41 deleterious(0.01) possibly_damaging(0.479) TCGA-AA-A010-01 13 28014364 28014364 A C MTIF3 Silent p.A74A 0.36 TCGA-AA-A010-01 13 28519688 28519688 A C ATP5EP2 3'UTR 0.37 TCGA-AA-A010-01 13 28589364 28589364 C A FLT3 Missense_Mutation p.D895Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 13 28597494 28597494 A C FLT3 Missense_Mutation p.F804C 0.37 tolerated(0.09) possibly_damaging(0.83) TCGA-AA-A010-01 13 28623778 28623778 G A FLT3 Silent p.L292L 0.42 TCGA-AA-A010-01 13 29041216 29041216 C A FLT1 Missense_Mutation p.S71I 0.34 deleterious(0.03) possibly_damaging(0.548) TCGA-AA-A010-01 13 29287578 29287578 C T SLC46A3 Missense_Mutation p.R100Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 13 29292092 29292092 A G SLC46A3 Missense_Mutation p.F15S 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 13 29598903 29598903 G T MTUS2 Missense_Mutation p.R33I 0.29 deleterious(0) benign(0.133) TCGA-AA-A010-01 13 29599705 29599705 G A MTUS2 Silent p.S300S 0.29 TCGA-AA-A010-01 13 29608199 29608199 A G MTUS2 Missense_Mutation p.S805G 0.30 tolerated(0.09) benign(0.024) TCGA-AA-A010-01 13 30097582 30097582 G A SLC7A1 Silent p.I290I 0.36 TCGA-AA-A010-01 13 30524512 30524512 A T LINC00544 RNA 0.38 TCGA-AA-A010-01 13 31036703 31036703 G C HMGB1 Missense_Mutation p.A148G 0.42 deleterious(0.01) probably_damaging(0.941) TCGA-AA-A010-01 13 31232879 31232879 C T USPL1 Missense_Mutation p.R889C 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 13 31318201 31318201 C A ALOX5AP Missense_Mutation p.F25L 0.47 deleterious(0.03) benign(0.154) TCGA-AA-A010-01 13 31495721 31495721 G T MEDAG Missense_Mutation p.K175N 0.36 deleterious(0.03) benign(0.102) TCGA-AA-A010-01 13 31711477 31711477 G T HSPH1 Missense_Mutation p.S852Y 0.42 deleterious(0.04) possibly_damaging(0.45) TCGA-AA-A010-01 13 31722599 31722599 C T HSPH1 Missense_Mutation p.A386T 0.52 tolerated(0.25) probably_damaging(1) TCGA-AA-A010-01 13 31822011 31822011 A G B3GALTL Missense_Mutation p.R123G 0.41 deleterious(0.05) benign(0.022) TCGA-AA-A010-01 13 32340090 32340090 T C RXFP2 Intron 0.23 TCGA-AA-A010-01 13 32340095 32340095 C A RXFP2 Missense_Mutation p.S143Y 0.23 tolerated(0.09) benign(0.141) TCGA-AA-A010-01 13 32365953 32365953 A C RXFP2 Missense_Mutation p.N386H 0.42 tolerated(0.05) benign(0.004) TCGA-AA-A010-01 13 32735306 32735306 C A FRY Missense_Mutation p.L604I 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 13 32802787 32802787 A G FRY Missense_Mutation p.T1801A 0.36 deleterious(0.02) possibly_damaging(0.643) TCGA-AA-A010-01 13 32811933 32811933 C T FRY Silent p.L2076L 0.33 TCGA-AA-A010-01 13 32813456 32813456 C A FRY Missense_Mutation p.F2162L 0.35 tolerated(0.41) probably_damaging(0.999) TCGA-AA-A010-01 13 32835944 32835944 C A FRY Missense_Mutation p.H2536Q 0.38 tolerated(0.35) benign(0.001) TCGA-AA-A010-01 13 32836532 32836532 C A FRY Missense_Mutation p.H2567N 0.30 tolerated_low_confidence(0.54) benign(0.001) TCGA-AA-A010-01 13 32907050 32907050 G T BRCA2 Missense_Mutation p.D479Y 0.31 deleterious(0) probably_damaging(0.946) TCGA-AA-A010-01 13 32912067 32912067 T G BRCA2 Missense_Mutation p.F1192C 0.38 tolerated(0.07) probably_damaging(0.917) TCGA-AA-A010-01 13 32953924 32953924 T G BRCA2 Nonsense_Mutation p.Y2997* 0.28 TCGA-AA-A010-01 13 32972606 32972606 C A BRCA2 Missense_Mutation p.S3319Y 0.35 tolerated(0.38) benign(0.059) TCGA-AA-A010-01 13 32978488 32978488 C T N4BP2L1 Missense_Mutation p.R148H 0.32 tolerated(0.52) benign(0.009) TCGA-AA-A010-01 13 33016916 33016916 G T N4BP2L2 Nonsense_Mutation p.C586* 0.29 TCGA-AA-A010-01 13 33017245 33017245 T C N4BP2L2 Missense_Mutation p.N477D 0.39 tolerated(0.41) benign(0.167) TCGA-AA-A010-01 13 33110158 33110158 T G N4BP2L2 Intron 0.41 TCGA-AA-A010-01 13 35615082 35615082 G T NBEA Nonsense_Mutation p.E103* 0.50 TCGA-AA-A010-01 13 35672435 35672435 G A NBEA Missense_Mutation p.A525T 0.38 tolerated(0.16) benign(0.41) TCGA-AA-A010-01 13 35733384 35733384 G T NBEA Missense_Mutation p.D1026Y 0.37 deleterious_low_confidence(0.04) benign(0.252) TCGA-AA-A010-01 13 35756666 35756666 G A NBEA Splice_Site p.X1611_splice 0.40 TCGA-AA-A010-01 13 36348730 36348730 G A DCLK1 3'UTR 0.35 TCGA-AA-A010-01 13 36396921 36396921 T C DCLK1 Missense_Mutation p.K500R 0.30 tolerated(0.43) possibly_damaging(0.486) TCGA-AA-A010-01 13 36744763 36744763 G T SOHLH2 Missense_Mutation p.H465N 0.41 tolerated(0.09) possibly_damaging(0.773) TCGA-AA-A010-01 13 37006660 37006660 G A CCNA1 5'UTR 0.37 TCGA-AA-A010-01 13 37269536 37269536 C A SERTM1 Silent p.S107S 0.37 TCGA-AA-A010-01 13 37678626 37678626 G A CSNK1A1L Silent p.F256F 0.39 TCGA-AA-A010-01 13 37678924 37678924 T C CSNK1A1L Missense_Mutation p.D157G 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A010-01 13 37679040 37679040 G A CSNK1A1L Silent p.D118D 0.37 TCGA-AA-A010-01 13 37679379 37679379 G A CSNK1A1L Silent p.S5S 0.35 TCGA-AA-A010-01 13 38137421 38137421 G T POSTN 3'UTR 0.31 TCGA-AA-A010-01 13 38229288 38229288 G T TRPC4 Silent p.I607I 0.32 TCGA-AA-A010-01 13 38237775 38237775 G T TRPC4 Missense_Mutation p.S489Y 0.24 tolerated(0.18) possibly_damaging(0.747) TCGA-AA-A010-01 13 38266442 38266442 G T TRPC4 Missense_Mutation p.L310M 0.43 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 13 39264943 39264944 - G FREM2 Frame_Shift_Ins p.V1156Gfs*14 0.26 TCGA-AA-A010-01 13 39265305 39265305 A G FREM2 Missense_Mutation p.D1275G 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 13 39450512 39450512 T C FREM2 Missense_Mutation p.F2846S 0.20 deleterious(0) possibly_damaging(0.7) TCGA-AA-A010-01 13 39554268 39554268 A G STOML3 Intron 0.44 TCGA-AA-A010-01 13 39587130 39587130 A T PROSER1 Silent p.A753A 0.34 TCGA-AA-A010-01 13 39587469 39587469 G A PROSER1 Silent p.G640G 0.37 TCGA-AA-A010-01 13 39600481 39600481 G A PROSER1 Missense_Mutation p.S138F 0.46 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 13 39616246 39616246 C A NHLRC3 Missense_Mutation p.F130L 0.32 tolerated(0.28) benign(0) TCGA-AA-A010-01 13 41704969 41704969 C A KBTBD6 Missense_Mutation p.R560I 0.40 tolerated(0.12) benign(0.121) TCGA-AA-A010-01 13 41705387 41705387 G A KBTBD6 Missense_Mutation p.R421C 0.36 tolerated(0.22) benign(0.009) TCGA-AA-A010-01 13 41706511 41706511 G T KBTBD6 Missense_Mutation p.S46Y 0.45 deleterious(0) probably_damaging(0.927) TCGA-AA-A010-01 13 41932600 41932600 A C NAA16 Missense_Mutation p.K416N 0.41 deleterious(0) possibly_damaging(0.831) TCGA-AA-A010-01 13 41941605 41941605 G A NAA16 Missense_Mutation p.D524N 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 13 42189137 42189137 G A VWA8 Silent p.G1565G 0.32 TCGA-AA-A010-01 13 42275627 42275627 T G VWA8 Silent p.R1089R 0.50 TCGA-AA-A010-01 13 42461370 42461370 C T VWA8 Missense_Mutation p.R260Q 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 13 42877824 42877824 G A AKAP11 Missense_Mutation p.A1648T 0.42 tolerated(1) benign(0.001) TCGA-AA-A010-01 13 43175018 43175018 G A TNFSF11 Splice_Site p.X145_splice 0.40 TCGA-AA-A010-01 13 44464275 44464275 C T LACC1 Missense_Mutation p.L387F 0.43 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 13 45010694 45010694 G T TSC22D1 Intron 0.38 TCGA-AA-A010-01 13 45148234 45148234 C A TSC22D1 Missense_Mutation p.Q659H 0.39 tolerated(0.71) benign(0.007) TCGA-AA-A010-01 13 45515420 45515420 A C NUFIP1 Missense_Mutation p.I470S 0.41 deleterious(0) probably_damaging(0.951) TCGA-AA-A010-01 13 45973114 45973114 T C SLC25A30 Silent p.R238R 0.30 TCGA-AA-A010-01 13 46541927 46541927 G A ZC3H13 Nonsense_Mutation p.R1345* 0.36 TCGA-AA-A010-01 13 46549641 46549641 G A ZC3H13 Missense_Mutation p.R749W 0.37 unknown(0) TCGA-AA-A010-01 13 46629917 46629917 C T CPB2 Missense_Mutation p.G356D 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 13 46802316 46802316 C A LRRC63 Missense_Mutation p.S252Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 13 46942869 46942869 T A KIAA0226L Missense_Mutation p.K206M 0.54 deleterious(0.03) possibly_damaging(0.76) TCGA-AA-A010-01 13 47273477 47273477 G A LRCH1 Missense_Mutation p.A418T 0.18 tolerated(0.33) benign(0.001) TCGA-AA-A010-01 13 47409304 47409304 G A HTR2A Missense_Mutation p.L362F 0.27 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 13 48660588 48660588 C T MED4 Missense_Mutation p.V65I 0.38 tolerated(0.41) benign(0.003) TCGA-AA-A010-01 13 48881473 48881473 G T RB1 Missense_Mutation p.K65N 0.32 tolerated(0.34) benign(0.165) TCGA-AA-A010-01 13 48916843 48916843 G T RB1 Nonsense_Mutation p.E125* 0.34 TCGA-AA-A010-01 13 48937070 48937070 G T RB1 Nonsense_Mutation p.E280* 0.35 TCGA-AA-A010-01 13 49089771 49089771 A G RCBTB2 Missense_Mutation p.V50A 0.38 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 13 49913861 49913861 C A CAB39L Missense_Mutation p.E214D 0.32 tolerated(0.48) benign(0.001) TCGA-AA-A010-01 13 50205646 50205646 G T ARL11 3'UTR 0.33 TCGA-AA-A010-01 13 50206824 50206824 C A ARL11 3'UTR 0.33 TCGA-AA-A010-01 13 50280445 50280445 C A KPNA3 Missense_Mutation p.D366Y 0.36 deleterious(0) possibly_damaging(0.823) TCGA-AA-A010-01 13 50280493 50280493 G T KPNA3 Missense_Mutation p.L350I 0.37 tolerated(0.19) probably_damaging(0.999) TCGA-AA-A010-01 13 51598325 51598325 C T RNA5SP29 3'Flank 0.37 TCGA-AA-A010-01 13 51918401 51918401 A T SERPINE3 Missense_Mutation p.K90N 0.29 tolerated(0.07) benign(0.008) TCGA-AA-A010-01 13 51936214 51936214 A C SERPINE3 3'UTR 0.36 TCGA-AA-A010-01 13 51939718 51939718 A G INTS6 3'UTR 0.37 TCGA-AA-A010-01 13 51939885 51939885 C A INTS6 3'UTR 0.29 TCGA-AA-A010-01 13 51948481 51948481 C A INTS6 Missense_Mutation p.R656I 0.34 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 13 52035233 52035233 G A RPS4XP16 RNA 0.27 TCGA-AA-A010-01 13 52035427 52035427 C T RPS4XP16 RNA 0.33 TCGA-AA-A010-01 13 52332419 52332419 A G WDFY2 Missense_Mutation p.T386A 0.43 tolerated(0.28) benign(0.273) TCGA-AA-A010-01 13 52508983 52508983 T C ATP7B Missense_Mutation p.D1436G 0.38 deleterious(0.02) benign(0.033) TCGA-AA-A010-01 13 52598489 52598489 C A ALG11 Missense_Mutation p.S208Y 0.42 deleterious(0.01) possibly_damaging(0.62) TCGA-AA-A010-01 13 52598792 52598792 T G ALG11 Missense_Mutation p.F309C 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 13 52599066 52599066 T C ALG11 Silent p.F400F 0.36 TCGA-AA-A010-01 13 52604526 52604526 C A UTP14C Missense_Mutation p.P529H 0.35 deleterious(0.01) probably_damaging(0.948) TCGA-AA-A010-01 13 52606815 52606815 T C UTP14C 3'UTR 0.38 TCGA-AA-A010-01 13 52607694 52607694 G T UTP14C 3'UTR 0.35 TCGA-AA-A010-01 13 52667336 52667336 G A NEK5 Silent p.V354V 0.40 TCGA-AA-A010-01 13 52707353 52707353 C A NEK3 Missense_Mutation p.E465D 0.39 tolerated(0.23) probably_damaging(0.996) TCGA-AA-A010-01 13 52854784 52854784 A G RP11-248G5.8 Intron 0.10 TCGA-AA-A010-01 13 52857448 52857448 G A RP11-248G5.8 RNA 0.32 TCGA-AA-A010-01 13 53422614 53422614 C A PCDH8 5'UTR 0.56 TCGA-AA-A010-01 13 53422629 53422629 C T PCDH8 5'UTR 0.62 TCGA-AA-A010-01 13 58208057 58208057 G A PCDH17 Silent p.A459A 0.49 TCGA-AA-A010-01 13 58208209 58208209 C A PCDH17 Missense_Mutation p.S510Y 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 13 58208221 58208221 C T PCDH17 Missense_Mutation p.S514L 0.48 deleterious(0.02) possibly_damaging(0.888) TCGA-AA-A010-01 13 58298834 58298834 T G PCDH17 Missense_Mutation p.N962K 0.47 tolerated(0.37) benign(0.017) TCGA-AA-A010-01 13 60413506 60413506 G T DIAPH3 Silent p.T938T 0.43 TCGA-AA-A010-01 13 61102983 61102983 A C TDRD3 Missense_Mutation p.I542L 0.40 tolerated(0.21) benign(0.016) TCGA-AA-A010-01 13 61985351 61985351 C A PCDH20 3'UTR 0.36 TCGA-AA-A010-01 13 61985983 61985983 G T PCDH20 Missense_Mutation p.S750Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 13 61987703 61987703 G T PCDH20 Missense_Mutation p.L177I 0.41 tolerated(0.25) benign(0.001) TCGA-AA-A010-01 13 66878725 66878725 G A PCDH9 3'UTR 0.45 TCGA-AA-A010-01 13 67205377 67205377 C A PCDH9 Missense_Mutation p.R1102M 0.15 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 13 67477721 67477721 T G PCDH9 Missense_Mutation p.K1018T 0.36 tolerated(0.49) benign(0) TCGA-AA-A010-01 13 67799425 67799425 C A PCDH9 Intron 0.30 TCGA-AA-A010-01 13 67800753 67800753 A G PCDH9 Missense_Mutation p.V607A 0.41 deleterious(0) possibly_damaging(0.816) TCGA-AA-A010-01 13 67800764 67800764 C A PCDH9 Missense_Mutation p.E603D 0.41 tolerated(0.21) benign(0.253) TCGA-AA-A010-01 13 67800976 67800976 C A PCDH9 Nonsense_Mutation p.E533* 0.43 TCGA-AA-A010-01 13 67801619 67801619 T G PCDH9 Missense_Mutation p.L318F 0.38 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 13 70293683 70293683 A T KLHL1 Missense_Mutation p.S611R 0.36 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 13 70314550 70314550 A C KLHL1 Missense_Mutation p.V593G 0.35 deleterious(0) possibly_damaging(0.898) TCGA-AA-A010-01 13 70371056 70371056 G A KLHL1 Silent p.L485L 0.33 TCGA-AA-A010-01 13 70456525 70456525 C A KLHL1 Nonsense_Mutation p.E373* 0.40 TCGA-AA-A010-01 13 75866316 75866316 G T TBC1D4 Missense_Mutation p.S1136R 0.35 deleterious(0) benign(0.1) TCGA-AA-A010-01 13 76055593 76055593 C T TBC1D4 Missense_Mutation p.G104D 0.48 tolerated_low_confidence(0.75) benign(0.06) TCGA-AA-A010-01 13 76195835 76195835 G T RP11-173B14.5 Intron 0.44 TCGA-AA-A010-01 13 76416068 76416068 G A LMO7 Missense_Mutation p.R1094H 0.43 tolerated(0.57) benign(0.001) TCGA-AA-A010-01 13 77581818 77581818 A G FBXL3 Missense_Mutation p.V250A 0.42 tolerated(0.07) benign(0.01) TCGA-AA-A010-01 13 78130740 78130740 G T SCEL Missense_Mutation p.S18I 0.44 deleterious(0) possibly_damaging(0.891) TCGA-AA-A010-01 13 78474102 78474102 G T EDNRB Missense_Mutation p.S452R 0.65 deleterious(0) probably_damaging(0.923) TCGA-AA-A010-01 13 78477335 78477335 G A EDNRB Nonsense_Mutation p.R343* 0.23 TCGA-AA-A010-01 13 79190282 79190282 G T RNF219 Silent p.I538I 0.31 TCGA-AA-A010-01 13 79894757 79894757 C A RBM26 Nonstop_Mutation p.*981Lext*3 0.37 TCGA-AA-A010-01 13 84454777 84454777 G T SLITRK1 Missense_Mutation p.P289H 0.34 deleterious(0.04) benign(0.119) TCGA-AA-A010-01 13 84454883 84454883 C A SLITRK1 Nonsense_Mutation p.E254* 0.34 TCGA-AA-A010-01 13 86368411 86368411 C A SLITRK6 Nonsense_Mutation p.E745* 0.28 TCGA-AA-A010-01 13 86370076 86370076 G T SLITRK6 Missense_Mutation p.L190I 0.33 tolerated(0.11) probably_damaging(0.999) TCGA-AA-A010-01 13 88330523 88330523 G T SLITRK5 3'UTR 0.33 TCGA-AA-A010-01 13 95092087 95092087 C T DCT 3'UTR 0.32 TCGA-AA-A010-01 13 95114330 95114330 C T DCT Missense_Mutation p.R326Q 0.36 tolerated(0.64) benign(0.002) TCGA-AA-A010-01 13 95673859 95673859 C T ABCC4 Silent p.S1316S 0.38 TCGA-AA-A010-01 13 95886893 95886893 C T ABCC4 Missense_Mutation p.V168I 0.29 tolerated(0.16) benign(0.015) TCGA-AA-A010-01 13 96241418 96241418 A G DZIP1 Missense_Mutation p.S673P 0.37 tolerated(0.12) benign(0.007) TCGA-AA-A010-01 13 96242592 96242592 C T DZIP1 Missense_Mutation p.R595Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 13 96277116 96277116 T C DZIP1 Missense_Mutation p.E293G 0.34 deleterious(0) probably_damaging(0.94) TCGA-AA-A010-01 13 96282338 96282338 G A DZIP1 Missense_Mutation p.L239F 0.37 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A010-01 13 96412328 96412328 G A DNAJC3 Missense_Mutation p.R194Q 0.46 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 13 96665580 96665580 A G UGGT2 Missense_Mutation p.V214A 0.27 deleterious(0.02) possibly_damaging(0.701) TCGA-AA-A010-01 13 98865617 98865617 T C FARP1 Missense_Mutation p.S41P 0.37 tolerated(0.37) benign(0.001) TCGA-AA-A010-01 13 98896949 98896949 C A FARP1 Intron 0.42 TCGA-AA-A010-01 13 99127564 99127564 C A STK24 Nonsense_Mutation p.E139* 0.42 TCGA-AA-A010-01 13 99947642 99947642 A T GPR183 Missense_Mutation p.F253Y 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 14 100129351 100129351 C T HHIPL1 Silent p.D547D 0.25 TCGA-AA-A010-01 14 100173905 100173905 G A CYP46A1 Missense_Mutation p.A195T 0.37 deleterious(0.03) possibly_damaging(0.908) TCGA-AA-A010-01 14 100364626 100364626 C T EML1 Missense_Mutation p.S314L 0.43 deleterious(0.01) possibly_damaging(0.778) TCGA-AA-A010-01 14 100404167 100404167 C A EML1 Silent p.A722A 0.32 TCGA-AA-A010-01 14 100603938 100603938 C T EVL Missense_Mutation p.R330W 0.31 deleterious(0) probably_damaging(0.961) TCGA-AA-A010-01 14 100625886 100625886 G T DEGS2 Silent p.V13V 0.33 TCGA-AA-A010-01 14 101348319 101348319 C T RTL1 Missense_Mutation p.R936H 0.30 tolerated(0.41) probably_damaging(0.988) TCGA-AA-A010-01 14 101350564 101350564 C A RTL1 Nonsense_Mutation p.E188* 0.38 TCGA-AA-A010-01 14 101507168 101507168 G T MIR376A1 RNA 0.35 TCGA-AA-A010-01 14 102276216 102276216 T A PPP2R5C Intron 0.32 TCGA-AA-A010-01 14 102483493 102483493 C T DYNC1H1 Silent p.C2639C 0.36 TCGA-AA-A010-01 14 102550226 102550226 C A HSP90AA1 Missense_Mutation p.K536N 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-A010-01 14 102698927 102698927 C T MOK Missense_Mutation p.D271N 0.42 tolerated(0.11) probably_damaging(0.991) TCGA-AA-A010-01 14 102825777 102825777 G A CINP Missense_Mutation p.A67V 0.28 tolerated(0.92) benign(0.138) TCGA-AA-A010-01 14 102900991 102900991 T G TECPR2 Missense_Mutation p.L613V 0.38 tolerated_low_confidence(0.55) benign(0.002) TCGA-AA-A010-01 14 102904454 102904454 C T TECPR2 Silent p.G830G 0.46 TCGA-AA-A010-01 14 103932006 103932006 A G MARK3 Missense_Mutation p.Y218C 0.28 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 103986344 103986344 C T CKB Missense_Mutation p.D335N 0.31 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 14 104216245 104216245 T G PPP1R13B Missense_Mutation p.Q285H 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 14 104245134 104245134 C T PPP1R13B Missense_Mutation p.R101Q 0.36 tolerated(0.59) benign(0.271) TCGA-AA-A010-01 14 104380208 104380208 G A C14orf2 Intron 0.39 TCGA-AA-A010-01 14 104481097 104481097 C A TDRD9 Silent p.I714I 0.44 TCGA-AA-A010-01 14 104491942 104491942 A C TDRD9 Missense_Mutation p.E920D 0.09 tolerated(0.12) benign(0.021) TCGA-AA-A010-01 14 105406856 105406856 C A AHNAK2 Nonsense_Mutation p.E4978* 0.35 TCGA-AA-A010-01 14 105406998 105406998 C A AHNAK2 Missense_Mutation p.Q4930H 0.37 possibly_damaging(0.846) TCGA-AA-A010-01 14 105410390 105410390 C A AHNAK2 Missense_Mutation p.D3800Y 0.36 possibly_damaging(0.783) TCGA-AA-A010-01 14 105411137 105411137 C T AHNAK2 Missense_Mutation p.G3551S 0.27 probably_damaging(0.935) TCGA-AA-A010-01 14 105415452 105415452 G A AHNAK2 Silent p.V2112V 0.75 TCGA-AA-A010-01 14 105415767 105415767 G A AHNAK2 Silent p.I2007I 0.23 TCGA-AA-A010-01 14 105417691 105417691 G T AHNAK2 Missense_Mutation p.S1366Y 0.78 possibly_damaging(0.781) TCGA-AA-A010-01 14 105418701 105418701 C A AHNAK2 Missense_Mutation p.E1029D 0.35 benign(0.058) TCGA-AA-A010-01 14 105707708 105707708 G A BRF1 Silent p.F196F 0.43 TCGA-AA-A010-01 14 105716112 105716112 C T BTBD6 Silent p.N187N 0.34 TCGA-AA-A010-01 14 105833639 105833639 C T PACS2 Silent p.I171I 0.37 TCGA-AA-A010-01 14 105996172 105996172 G T TMEM121 3'UTR 0.38 TCGA-AA-A010-01 14 106091543 106091543 T C IGHG4 Silent p.G117G 0.35 TCGA-AA-A010-01 14 106209144 106209144 G A IGHG1 Missense_Mutation p.P89S 0.05 tolerated(0.07) benign(0.095) TCGA-AA-A010-01 14 106320823 106320823 G A IGHM Silent p.P329P 0.40 TCGA-AA-A010-01 14 106641567 106641567 G A IGHV1-18 Missense_Mutation p.A116V 0.41 tolerated(0.09) benign(0.075) TCGA-AA-A010-01 14 106667585 106667585 G A IGHV3-20 Missense_Mutation p.A116V 0.37 tolerated_low_confidence(0.08) benign(0.07) TCGA-AA-A010-01 14 106845583 106845583 C T IGHV3-35 Missense_Mutation p.V31I 0.41 deleterious_low_confidence(0.03) benign(0.308) TCGA-AA-A010-01 14 106926258 106926258 T G IGHV3-43 Missense_Mutation p.K95T 0.16 deleterious_low_confidence(0) possibly_damaging(0.622) TCGA-AA-A010-01 14 106967590 106967590 T G IGHV1-46 5'UTR 0.36 TCGA-AA-A010-01 14 19377916 19377916 C T OR11H12 Missense_Mutation p.S108F 0.28 deleterious(0) benign(0.221) TCGA-AA-A010-01 14 19563489 19563489 G T POTEG Missense_Mutation p.D335Y 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 19574229 19574229 T C POTEG Missense_Mutation p.F429S 0.28 tolerated(0.13) benign(0.004) TCGA-AA-A010-01 14 20248810 20248810 C T OR4M1 Missense_Mutation p.S110L 0.37 deleterious(0) benign(0.407) TCGA-AA-A010-01 14 20444089 20444089 C T OR4K15 Missense_Mutation p.L138F 0.47 deleterious(0.01) benign(0.049) TCGA-AA-A010-01 14 20528658 20528658 G T OR4L1 Missense_Mutation p.G152V 0.48 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 14 20585882 20585882 C A OR4K17 Missense_Mutation p.S106Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 14 20586509 20586509 C A OR4K17 Missense_Mutation p.P315Q 0.44 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 14 20823033 20823033 C T PARP2 Missense_Mutation p.R290W 0.37 deleterious(0) possibly_damaging(0.828) TCGA-AA-A010-01 14 21052465 21052465 G T RNASE11 Missense_Mutation p.L57M 0.39 deleterious(0.01) benign(0.428) TCGA-AA-A010-01 14 21052549 21052549 C T RNASE11 Missense_Mutation p.E29K 0.37 tolerated(0.11) benign(0.354) TCGA-AA-A010-01 14 21250230 21250230 C A RNASE6 Missense_Mutation p.F124L 0.44 tolerated(0.54) benign(0.058) TCGA-AA-A010-01 14 21250447 21250447 C T RNASE6 3'UTR 0.34 TCGA-AA-A010-01 14 21359864 21359864 A G RNASE3 Missense_Mutation p.T7A 0.34 tolerated(0.06) benign(0.164) TCGA-AA-A010-01 14 21542809 21542809 G A ARHGEF40 Missense_Mutation p.G307D 0.48 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 14 21623756 21623756 G T OR5AU1 Silent p.I143I 0.33 TCGA-AA-A010-01 14 21789492 21789492 G T RPGRIP1 Missense_Mutation p.E514D 0.33 tolerated(0.05) probably_damaging(0.972) TCGA-AA-A010-01 14 21796629 21796629 G A RPGRIP1 Missense_Mutation p.R981Q 0.42 tolerated(1) benign(0) TCGA-AA-A010-01 14 21825477 21825477 G A SUPT16H Missense_Mutation p.R847W 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 21853725 21853725 A C CHD8 3'UTR 0.40 TCGA-AA-A010-01 14 21873607 21873607 G A CHD8 Missense_Mutation p.A1023V 0.24 deleterious(0.02) possibly_damaging(0.764) TCGA-AA-A010-01 14 21963418 21963418 T G TOX4 Missense_Mutation p.L558V 0.43 tolerated(0.32) possibly_damaging(0.899) TCGA-AA-A010-01 14 22038675 22038675 G A OR10G3 Silent p.L67L 0.38 TCGA-AA-A010-01 14 22102378 22102378 G A OR10G2 Silent p.D207D 0.13 TCGA-AA-A010-01 14 23306031 23306031 C A MMP14 Missense_Mutation p.S2Y 0.38 tolerated_low_confidence(0.06) unknown(0) TCGA-AA-A010-01 14 23394130 23394130 G T PRMT5 Silent p.L299L 0.37 TCGA-AA-A010-01 14 23523376 23523376 G A CDH24 Nonsense_Mutation p.R316* 0.40 TCGA-AA-A010-01 14 23569014 23569014 A G C14orf119 3'UTR 0.31 TCGA-AA-A010-01 14 23744759 23744759 G A HOMEZ 3'UTR 0.40 TCGA-AA-A010-01 14 23794516 23794516 A T BCL2L2-PABPN1 3'UTR 0.27 TCGA-AA-A010-01 14 23854192 23854192 G A MYH6 Missense_Mutation p.S1741L 0.39 tolerated(0.09) benign(0.013) TCGA-AA-A010-01 14 23857451 23857451 C A MYH6 Missense_Mutation p.Q1424H 0.27 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 14 23859644 23859644 C T MYH6 Silent p.E1118E 0.34 TCGA-AA-A010-01 14 23869610 23869610 A G MYH6 Missense_Mutation p.I479T 0.43 deleterious(0) possibly_damaging(0.844) TCGA-AA-A010-01 14 23871920 23871920 G T MYH6 Missense_Mutation p.L330I 0.37 deleterious(0) benign(0.091) TCGA-AA-A010-01 14 23874458 23874458 T C MYH6 Missense_Mutation p.D159G 0.29 deleterious(0.01) probably_damaging(0.946) TCGA-AA-A010-01 14 23896862 23896862 C T MYH7 Missense_Mutation p.G607D 0.37 tolerated(0.08) probably_damaging(0.956) TCGA-AA-A010-01 14 23947229 23947229 G A NGDN Silent p.R314R 0.34 TCGA-AA-A010-01 14 24038738 24038738 G A JPH4 3'UTR 0.32 TCGA-AA-A010-01 14 24569454 24569454 T C PCK2 Intron 0.37 TCGA-AA-A010-01 14 24629074 24629074 C A RNF31 Silent p.G967G 0.38 TCGA-AA-A010-01 14 24633277 24633277 G T IRF9 Missense_Mutation p.D195Y 0.39 tolerated(0.09) benign(0.316) TCGA-AA-A010-01 14 24649932 24649932 G T IPO4 Silent p.I1026I 0.37 TCGA-AA-A010-01 14 24656156 24656156 C A IPO4 Missense_Mutation p.L228F 0.34 tolerated(1) benign(0.004) TCGA-AA-A010-01 14 24659599 24659599 A C TM9SF1 Missense_Mutation p.F472V 0.32 deleterious(0.03) possibly_damaging(0.893) TCGA-AA-A010-01 14 24684960 24684960 A G MDP1 Silent p.P27P 0.35 TCGA-AA-A010-01 14 24707966 24707966 C A GMPR2 Silent p.I361I 0.49 TCGA-AA-A010-01 14 24729843 24729843 A G TGM1 Silent p.S190S 0.36 TCGA-AA-A010-01 14 24791343 24791343 G A ADCY4 Missense_Mutation p.R839W 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 14 24793382 24793382 C A ADCY4 Missense_Mutation p.K644N 0.38 tolerated(0.45) possibly_damaging(0.864) TCGA-AA-A010-01 14 24844870 24844870 G A NFATC4 Silent p.G689G 0.42 TCGA-AA-A010-01 14 24845877 24845877 C T NFATC4 Missense_Mutation p.R875W 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.738) TCGA-AA-A010-01 14 24877619 24877619 G A NYNRIN Missense_Mutation p.G248E 0.27 tolerated_low_confidence(0.08) benign(0.04) TCGA-AA-A010-01 14 24878434 24878434 G T NYNRIN Missense_Mutation p.Q478H 0.31 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-AA-A010-01 14 25288326 25288326 G A STXBP6 Missense_Mutation p.R176C 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 14 26917305 26917305 C T NOVA1 Missense_Mutation p.E462K 0.38 tolerated(0.21) probably_damaging(0.938) TCGA-AA-A010-01 14 29236455 29236455 G A FOXG1 5'UTR 0.44 TCGA-AA-A010-01 14 29237715 29237715 C T FOXG1 Silent p.L410L 0.24 TCGA-AA-A010-01 14 29241909 29241909 T G C14orf23 5'Flank 0.33 TCGA-AA-A010-01 14 30046618 30046618 G A PRKD1 Silent p.I855I 0.31 TCGA-AA-A010-01 14 30103633 30103633 C A PRKD1 Missense_Mutation p.K435N 0.32 deleterious(0.01) benign(0.178) TCGA-AA-A010-01 14 30107943 30107943 C A PRKD1 Missense_Mutation p.K288N 0.29 deleterious(0.03) probably_damaging(0.987) TCGA-AA-A010-01 14 30194766 30194766 C T PRKD1 Missense_Mutation p.D127N 0.47 deleterious(0.04) possibly_damaging(0.897) TCGA-AA-A010-01 14 31177197 31177197 C A SCFD1 Missense_Mutation p.L519I 0.36 tolerated(0.12) benign(0.217) TCGA-AA-A010-01 14 31344270 31344270 C T COCH Silent p.L15L 0.31 TCGA-AA-A010-01 14 31405829 31405829 A G STRN3 Missense_Mutation p.S240P 0.37 tolerated(0.31) benign(0.001) TCGA-AA-A010-01 14 31535412 31535412 T G AP4S1 Missense_Mutation p.F4V 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 14 31576034 31576034 G A HECTD1 Silent p.D2348D 0.32 TCGA-AA-A010-01 14 31614023 31614023 G T HECTD1 Missense_Mutation p.T874K 0.32 tolerated(0.53) benign(0.035) TCGA-AA-A010-01 14 31641128 31641128 C A HECTD1 Missense_Mutation p.R424I 0.31 deleterious(0) probably_damaging(0.972) TCGA-AA-A010-01 14 32902691 32902691 G T AKAP6 5'UTR 0.33 TCGA-AA-A010-01 14 32902840 32902840 C T AKAP6 Silent p.D47D 0.37 TCGA-AA-A010-01 14 33069853 33069853 G A AKAP6 Missense_Mutation p.R862Q 0.41 tolerated(1) benign(0.017) TCGA-AA-A010-01 14 33242901 33242901 C A AKAP6 Silent p.I1130I 0.23 TCGA-AA-A010-01 14 33292344 33292344 C T AKAP6 Silent p.D1775D 0.35 TCGA-AA-A010-01 14 33684596 33684596 C T NPAS3 Nonsense_Mutation p.R117* 0.31 TCGA-AA-A010-01 14 33684624 33684624 C A NPAS3 Nonsense_Mutation p.S126* 0.27 TCGA-AA-A010-01 14 33684750 33684750 A G NPAS3 Intron 0.41 TCGA-AA-A010-01 14 34204483 34204483 G A NPAS3 Missense_Mutation p.R266Q 0.38 deleterious(0) benign(0.002) TCGA-AA-A010-01 14 34400399 34400399 C T EGLN3 Missense_Mutation p.G127E 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 14 35272172 35272172 T G BAZ1A Missense_Mutation p.K250T 0.42 deleterious(0.02) benign(0.403) TCGA-AA-A010-01 14 35554940 35554940 G T PPP2R3C Silent p.I406I 0.38 TCGA-AA-A010-01 14 35560282 35560282 G T PPP2R3C Missense_Mutation p.F369L 0.37 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 14 36017727 36017727 G T RALGAPA1 Intron 0.30 TCGA-AA-A010-01 14 36295772 36295772 A C BRMS1L Missense_Mutation p.E17A 0.45 tolerated(0.09) benign(0.174) TCGA-AA-A010-01 14 36982324 36982324 C A SFTA3 Missense_Mutation p.R12M 0.32 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-AA-A010-01 14 36982412 36982412 G A SFTA3 5'UTR 0.37 TCGA-AA-A010-01 14 36986293 36986293 T G NKX2-1 3'UTR 0.29 TCGA-AA-A010-01 14 36986392 36986392 C T NKX2-1 3'UTR 0.43 TCGA-AA-A010-01 14 37135749 37135749 G A PAX9 Silent p.P238P 0.43 TCGA-AA-A010-01 14 38311366 38311366 C A TTC6 Missense_Mutation p.S1844Y 0.61 tolerated(0.05) probably_damaging(0.999) TCGA-AA-A010-01 14 38681076 38681076 C T SSTR1 3'UTR 0.40 TCGA-AA-A010-01 14 38723830 38723830 G A CLEC14A Silent p.V466V 0.44 TCGA-AA-A010-01 14 38724889 38724889 G T CLEC14A Missense_Mutation p.F113L 0.41 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 14 39304927 39304927 A C LINC00639 RNA 0.35 TCGA-AA-A010-01 14 39650942 39650942 G T PNN Nonsense_Mutation p.G677* 0.41 TCGA-AA-A010-01 14 39706177 39706177 G A MIA2 Missense_Mutation p.R56Q 0.42 tolerated(0.08) benign(0.311) TCGA-AA-A010-01 14 39717054 39717054 G T MIA2 Nonsense_Mutation p.E426* 0.12 TCGA-AA-A010-01 14 39762550 39762550 G A CTAGE5 Missense_Mutation p.E159K 0.34 deleterious(0.02) possibly_damaging(0.69) TCGA-AA-A010-01 14 39790184 39790184 A G CTAGE5 Silent p.R537R 0.37 TCGA-AA-A010-01 14 42360695 42360695 T C LRFN5 Missense_Mutation p.V543A 0.46 tolerated(0.07) benign(0.13) TCGA-AA-A010-01 14 44974692 44974692 G T FSCB Missense_Mutation p.S500Y 0.41 deleterious(0.01) possibly_damaging(0.452) TCGA-AA-A010-01 14 44975650 44975650 C A FSCB Missense_Mutation p.A181S 0.33 deleterious(0.05) possibly_damaging(0.794) TCGA-AA-A010-01 14 45403393 45403393 C A KLHL28 Missense_Mutation p.R423I 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 45403558 45403558 G T KLHL28 Missense_Mutation p.S368Y 0.41 tolerated(0.07) benign(0.152) TCGA-AA-A010-01 14 45432409 45432409 G A FAM179B Missense_Mutation p.R262Q 0.42 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-AA-A010-01 14 45542738 45542738 G A FAM179B Missense_Mutation p.D1713N 0.26 tolerated(0.12) benign(0.008) TCGA-AA-A010-01 14 45584160 45584160 A G PRPF39 3'UTR 0.48 TCGA-AA-A010-01 14 45585343 45585343 C A FKBP3 3'UTR 0.43 TCGA-AA-A010-01 14 45644519 45644519 G T FANCM Missense_Mutation p.K854N 0.47 tolerated(0.14) benign(0.013) TCGA-AA-A010-01 14 45668095 45668095 A C FANCM Missense_Mutation p.N1989H 0.44 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 14 47120841 47120841 G T RPL10L Silent p.I33I 0.36 TCGA-AA-A010-01 14 50088493 50088493 C T MGAT2 Silent p.F169F 0.38 TCGA-AA-A010-01 14 50094729 50094729 C T DNAAF2 Splice_Site p.X669_splice 0.41 TCGA-AA-A010-01 14 50295440 50295440 C A NEMF Nonsense_Mutation p.G440* 0.44 TCGA-AA-A010-01 14 50298056 50298056 C A NEMF Missense_Mutation p.K302N 0.36 deleterious(0.05) possibly_damaging(0.566) TCGA-AA-A010-01 14 50360545 50360545 T C ARF6 Missense_Mutation p.Y31H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.837) TCGA-AA-A010-01 14 50605396 50605396 T G SOS2 Missense_Mutation p.E964D 0.39 tolerated(0.05) probably_damaging(0.977) TCGA-AA-A010-01 14 50606745 50606745 G A SOS2 Silent p.D900D 0.35 TCGA-AA-A010-01 14 50736036 50736036 G A L2HGDH Nonsense_Mutation p.R251* 0.34 TCGA-AA-A010-01 14 50863833 50863833 G T CDKL1 5'Flank 0.40 TCGA-AA-A010-01 14 50952900 50952900 G T MAP4K5 Missense_Mutation p.S60Y 0.22 deleterious(0) possibly_damaging(0.891) TCGA-AA-A010-01 14 51058272 51058272 A G ATL1 Missense_Mutation p.D146G 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 51348323 51348323 G A ABHD12B Silent p.S155S 0.41 TCGA-AA-A010-01 14 51378515 51378515 G A PYGL Silent p.D634D 0.35 TCGA-AA-A010-01 14 51382068 51382068 G A PYGL Silent p.I463I 0.30 TCGA-AA-A010-01 14 51448749 51448749 G A TRIM9 Missense_Mutation p.T559I 0.37 deleterious(0) possibly_damaging(0.864) TCGA-AA-A010-01 14 52171626 52171626 C T FRMD6 Silent p.F177F 0.40 TCGA-AA-A010-01 14 52186820 52186820 G A FRMD6 Missense_Mutation p.D358N 0.32 deleterious(0.04) possibly_damaging(0.663) TCGA-AA-A010-01 14 52192521 52192521 C A FRMD6 Missense_Mutation p.S506Y 0.30 deleterious(0.01) probably_damaging(0.935) TCGA-AA-A010-01 14 52477691 52477691 T A NID2 Nonsense_Mutation p.K1209* 0.32 TCGA-AA-A010-01 14 52781620 52781620 C A PTGER2 Missense_Mutation p.F118L 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 53360146 53360146 C A FERMT2 Splice_Site p.X131_splice 0.36 TCGA-AA-A010-01 14 54950478 54950478 G T GMFB Missense_Mutation p.S4Y 0.36 deleterious(0) possibly_damaging(0.885) TCGA-AA-A010-01 14 55513128 55513128 T A SOCS4 3'UTR 0.35 TCGA-AA-A010-01 14 55515062 55515062 T G SOCS4 3'UTR 0.04 TCGA-AA-A010-01 14 57269054 57269054 C T OTX2 Missense_Mutation p.R98K 0.27 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 14 57696579 57696579 C T EXOC5 Missense_Mutation p.R390K 0.32 tolerated(1) possibly_damaging(0.517) TCGA-AA-A010-01 14 57735993 57735993 C T AP5M1 5'UTR 0.35 TCGA-AA-A010-01 14 57938041 57938041 G A C14orf105 3'UTR 0.42 TCGA-AA-A010-01 14 57957714 57957714 C A C14orf105 Missense_Mutation p.R100I 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 58600059 58600059 T G C14orf37 Missense_Mutation p.D457A 0.33 deleterious(0.01) possibly_damaging(0.728) TCGA-AA-A010-01 14 58796260 58796260 G A ARID4A Missense_Mutation p.R226K 0.42 tolerated(0.07) probably_damaging(0.996) TCGA-AA-A010-01 14 58820473 58820473 C T ARID4A Nonsense_Mutation p.R585* 0.39 TCGA-AA-A010-01 14 58910794 58910794 G T KIAA0586 Missense_Mutation p.E289D 0.40 deleterious(0.01) benign(0.311) TCGA-AA-A010-01 14 60063401 60063401 G T RTN1 3'UTR 0.32 TCGA-AA-A010-01 14 60575027 60575027 C A PCNXL4 Intron 0.58 TCGA-AA-A010-01 14 60635480 60635480 C A DHRS7 Intron 0.34 TCGA-AA-A010-01 14 60749518 60749518 C T PPM1A Missense_Mutation p.R106C 0.48 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 60756556 60756556 G A PPM1A Missense_Mutation p.D402N 0.39 tolerated(0.08) benign(0.014) TCGA-AA-A010-01 14 60759271 60759271 T G PPM1A 3'UTR 0.29 TCGA-AA-A010-01 14 60951765 60951765 C T C14orf39 Missense_Mutation p.R11K 0.38 tolerated(0.65) possibly_damaging(0.567) TCGA-AA-A010-01 14 61180302 61180302 C A SIX4 Missense_Mutation p.E723D 0.26 deleterious_low_confidence(0.04) benign(0.004) TCGA-AA-A010-01 14 61186643 61186643 C T SIX4 Missense_Mutation p.A462T 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-AA-A010-01 14 61190377 61190377 C T SIX4 Missense_Mutation p.S139N 0.39 deleterious(0.02) benign(0.019) TCGA-AA-A010-01 14 63174245 63174245 T G KCNH5 Missense_Mutation p.K983T 0.34 deleterious_low_confidence(0.01) benign(0.075) TCGA-AA-A010-01 14 64497747 64497747 G A SYNE2 Missense_Mutation p.R2298K 0.31 benign(0.009) TCGA-AA-A010-01 14 64540697 64540697 A C SYNE2 Missense_Mutation p.K3570T 0.41 benign(0.076) TCGA-AA-A010-01 14 64619338 64619338 T G SYNE2 Missense_Mutation p.S5232R 0.34 possibly_damaging(0.856) TCGA-AA-A010-01 14 64635686 64635686 A G SYNE2 Missense_Mutation p.N5666S 0.09 benign(0.003) TCGA-AA-A010-01 14 64653203 64653203 C T SYNE2 Missense_Mutation p.A5873V 0.39 benign(0.407) TCGA-AA-A010-01 14 64694173 64694173 T G SYNE2 3'Flank 0.45 TCGA-AA-A010-01 14 64699873 64699873 C T ESR2 Silent p.Q525Q 0.38 TCGA-AA-A010-01 14 64855178 64855178 G T MTHFD1 Missense_Mutation p.E11D 0.37 tolerated(0.23) benign(0.003) TCGA-AA-A010-01 14 64936385 64936385 C A AKAP5 Missense_Mutation p.L425I 0.26 tolerated(0.1) benign(0.03) TCGA-AA-A010-01 14 64939952 64939952 G T AKAP5 3'UTR 0.39 TCGA-AA-A010-01 14 64940632 64940632 G T AKAP5 3'UTR 0.35 TCGA-AA-A010-01 14 64941036 64941036 C A AKAP5 3'UTR 0.35 TCGA-AA-A010-01 14 64990792 64990792 T G ZBTB1 3'UTR 0.32 TCGA-AA-A010-01 14 65236382 65236382 G A SPTB Missense_Mutation p.R1955W 0.33 deleterious(0.03) probably_damaging(0.929) TCGA-AA-A010-01 14 66954896 66954896 G T LINC00238 RNA 0.35 TCGA-AA-A010-01 14 66958866 66958866 G T LINC00238 RNA 0.33 TCGA-AA-A010-01 14 67390961 67390961 G A GPHN Silent p.Q260Q 0.26 TCGA-AA-A010-01 14 67664960 67664960 G T FAM71D Missense_Mutation p.D28Y 0.40 deleterious(0.04) benign(0.002) TCGA-AA-A010-01 14 67769139 67769139 C T MPP5 Missense_Mutation p.R272C 0.35 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 14 67848323 67848323 T G EIF2S1 Silent p.A198A 0.25 TCGA-AA-A010-01 14 68113681 68113681 G T ARG2 Missense_Mutation p.D221Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 14 69345217 69345217 C T ACTN1 Silent p.T795T 0.43 TCGA-AA-A010-01 14 69351025 69351025 G A ACTN1 Missense_Mutation p.R499W 0.36 deleterious(0) probably_damaging(0.942) TCGA-AA-A010-01 14 69521041 69521041 G A DCAF5 Missense_Mutation p.R788W 0.40 deleterious_low_confidence(0.03) probably_damaging(0.953) TCGA-AA-A010-01 14 70237745 70237745 G T SRSF5 Missense_Mutation p.K158N 0.40 deleterious(0) possibly_damaging(0.838) TCGA-AA-A010-01 14 70712808 70712808 T G ADAM21P1 RNA 0.32 TCGA-AA-A010-01 14 70713318 70713318 C A ADAM21P1 RNA 0.30 TCGA-AA-A010-01 14 70713328 70713328 C T ADAM21P1 RNA 0.19 TCGA-AA-A010-01 14 70924432 70924432 C T ADAM21 Silent p.H72H 0.22 TCGA-AA-A010-01 14 71059715 71059715 G T MED6 Intron 0.31 TCGA-AA-A010-01 14 71109059 71109059 G A TTC9 Silent p.K71K 0.40 TCGA-AA-A010-01 14 71374642 71374642 G A PCNX Silent p.P25P 0.43 TCGA-AA-A010-01 14 71444682 71444682 G A PCNX Missense_Mutation p.R543Q 0.32 deleterious_low_confidence(0.05) benign(0.038) TCGA-AA-A010-01 14 71575521 71575521 C T PCNX Nonsense_Mutation p.R2168* 0.40 TCGA-AA-A010-01 14 73159822 73159822 G T DPF3 Missense_Mutation p.T235N 0.40 tolerated(0.48) benign(0.028) TCGA-AA-A010-01 14 73181138 73181138 G T DPF3 Silent p.V199V 0.34 TCGA-AA-A010-01 14 73464804 73464804 C T ZFYVE1 Missense_Mutation p.D235N 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 14 73664774 73664774 C T PSEN1 Missense_Mutation p.R269C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 14 73822372 73822372 C A NUMB Nonsense_Mutation p.E30* 0.30 TCGA-AA-A010-01 14 73960092 73960092 G T HEATR4 Intron 0.33 TCGA-AA-A010-01 14 74062459 74062459 C A ACOT4 3'UTR 0.56 TCGA-AA-A010-01 14 74186144 74186144 G A ELMSAN1 Nonsense_Mutation p.Q1000* 0.38 TCGA-AA-A010-01 14 74411252 74411252 G A FAM161B Silent p.S300S 0.40 TCGA-AA-A010-01 14 74489701 74489701 G A CCDC176 Missense_Mutation p.E47K 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 14 74531482 74531482 A C CCDC176 3'UTR 0.45 TCGA-AA-A010-01 14 74727373 74727373 G T VSX2 Missense_Mutation p.K279N 0.37 tolerated(0.07) benign(0.019) TCGA-AA-A010-01 14 74824611 74824611 G A VRTN Silent p.E375E 0.32 TCGA-AA-A010-01 14 74969589 74969589 T G LTBP2 Missense_Mutation p.E1646A 0.40 tolerated(0.36) possibly_damaging(0.459) TCGA-AA-A010-01 14 74978020 74978020 C T LTBP2 Missense_Mutation p.V986I 0.40 tolerated(0.36) benign(0.062) TCGA-AA-A010-01 14 75245210 75245210 C A YLPM1 Missense_Mutation p.H312N 0.40 unknown(0) TCGA-AA-A010-01 14 75265490 75265490 C T YLPM1 Missense_Mutation p.R1164C 0.32 probably_damaging(0.917) TCGA-AA-A010-01 14 75276969 75276969 C T YLPM1 Missense_Mutation p.R1692C 0.37 probably_damaging(0.984) TCGA-AA-A010-01 14 75515324 75515324 T G MLH3 Missense_Mutation p.K345N 0.36 deleterious(0) benign(0.349) TCGA-AA-A010-01 14 75538141 75538141 G T ZC2HC1C Nonsense_Mutation p.E289* 0.36 TCGA-AA-A010-01 14 75576448 75576448 G T NEK9 Silent p.V374V 0.22 TCGA-AA-A010-01 14 76638221 76638221 G T GPATCH2L Nonsense_Mutation p.E255* 0.30 TCGA-AA-A010-01 14 77297717 77297717 T C C14orf166B Missense_Mutation p.V130A 0.34 deleterious(0.03) possibly_damaging(0.49) TCGA-AA-A010-01 14 77723037 77723037 C T TMEM63C Silent p.L797L 0.37 TCGA-AA-A010-01 14 77791258 77791258 C T GSTZ1 Nonsense_Mutation p.R21* 0.33 TCGA-AA-A010-01 14 77844860 77844860 T G SAMD15 Missense_Mutation p.S367A 0.36 tolerated(0.13) possibly_damaging(0.659) TCGA-AA-A010-01 14 77845333 77845333 C A SAMD15 Silent p.V524V 0.37 TCGA-AA-A010-01 14 77861109 77861109 C A NOXRED1 Missense_Mutation p.K315N 0.38 deleterious(0) possibly_damaging(0.543) TCGA-AA-A010-01 14 78045431 78045431 C A SPTLC2 Missense_Mutation p.D117Y 0.40 deleterious(0) possibly_damaging(0.513) TCGA-AA-A010-01 14 78184019 78184019 G T SNW1 3'UTR 0.35 TCGA-AA-A010-01 14 80164137 80164137 C T NRXN3 Missense_Mutation p.R888W 0.23 deleterious(0) benign(0.028) TCGA-AA-A010-01 14 80164252 80164252 G A NRXN3 Missense_Mutation p.R926H 0.35 deleterious(0) benign(0.002) TCGA-AA-A010-01 14 81251880 81251880 C A CEP128 Nonsense_Mutation p.E524* 0.35 TCGA-AA-A010-01 14 81610125 81610125 G A TSHR Missense_Mutation p.E575K 0.42 deleterious(0.04) benign(0.045) TCGA-AA-A010-01 14 81965998 81965998 G T SEL1L Silent p.G262G 0.38 TCGA-AA-A010-01 14 82000101 82000101 G A SEL1L 5'UTR 0.36 TCGA-AA-A010-01 14 86087818 86087818 C A FLRT2 5'UTR 0.39 TCGA-AA-A010-01 14 86088894 86088894 C T FLRT2 Missense_Mutation p.R346W 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 14 86089896 86089896 C T FLRT2 3'UTR 0.32 TCGA-AA-A010-01 14 86091445 86091445 A G FLRT2 3'UTR 0.38 TCGA-AA-A010-01 14 86092059 86092059 T G FLRT2 3'UTR 0.40 TCGA-AA-A010-01 14 86092190 86092190 C A FLRT2 3'UTR 0.35 TCGA-AA-A010-01 14 86092810 86092810 A C FLRT2 3'UTR 0.37 TCGA-AA-A010-01 14 86092938 86092938 T C FLRT2 3'UTR 0.33 TCGA-AA-A010-01 14 86093594 86093594 A G FLRT2 3'UTR 0.47 TCGA-AA-A010-01 14 86093651 86093651 C A FLRT2 3'UTR 0.38 TCGA-AA-A010-01 14 86093681 86093681 G T FLRT2 3'UTR 0.41 TCGA-AA-A010-01 14 86094191 86094191 T C FLRT2 3'UTR 0.43 TCGA-AA-A010-01 14 88946670 88946670 C T PTPN21 Missense_Mutation p.G369R 0.42 deleterious(0.01) probably_damaging(0.974) TCGA-AA-A010-01 14 89082533 89082533 A G EML5 Silent p.F1950F 0.33 TCGA-AA-A010-01 14 89124646 89124646 A C EML5 Silent p.V1254V 0.50 TCGA-AA-A010-01 14 89153603 89153603 C A EML5 Missense_Mutation p.K937N 0.39 deleterious(0) possibly_damaging(0.881) TCGA-AA-A010-01 14 89206753 89206753 C T EML5 Missense_Mutation p.R230Q 0.34 deleterious(0.01) possibly_damaging(0.601) TCGA-AA-A010-01 14 89337894 89337894 C T TTC8 Missense_Mutation p.R351W 0.52 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 14 90651285 90651285 G - KCNK13 Frame_Shift_Del p.V391Wfs*7 0.28 TCGA-AA-A010-01 14 90782986 90782986 C T NRDE2 Missense_Mutation p.D115N 0.39 tolerated(0.16) benign(0.3) TCGA-AA-A010-01 14 90870303 90870303 C A CALM1 Silent p.V92V 0.43 TCGA-AA-A010-01 14 91626708 91626708 C T C14orf159 Missense_Mutation p.P24S 0.24 tolerated(0.41) benign(0.008) TCGA-AA-A010-01 14 91701238 91701238 G A GPR68 Missense_Mutation p.R53W 0.46 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 14 91757359 91757359 G T CCDC88C Missense_Mutation p.F1394L 0.42 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 14 92040751 92040751 T G AL133373.1 Missense_Mutation p.K69T 0.44 unknown(0) TCGA-AA-A010-01 14 92054362 92054362 G A CATSPERB Missense_Mutation p.A1006V 0.28 tolerated(0.68) benign(0.002) TCGA-AA-A010-01 14 92253926 92253926 T G TC2N Missense_Mutation p.N365H 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 14 92268614 92268614 C T TC2N Silent p.K151K 0.54 TCGA-AA-A010-01 14 92470155 92470155 C T TRIP11 Missense_Mutation p.E1389K 0.36 tolerated(0.09) benign(0.025) TCGA-AA-A010-01 14 92472010 92472010 C A TRIP11 Missense_Mutation p.K770N 0.39 deleterious(0) benign(0.102) TCGA-AA-A010-01 14 92563031 92563031 C T ATXN3 Missense_Mutation p.R59H 0.34 tolerated(0.08) benign(0.027) TCGA-AA-A010-01 14 92790257 92790257 C T SLC24A4 Missense_Mutation p.A28V 0.36 tolerated_low_confidence(0.15) benign(0.003) TCGA-AA-A010-01 14 92909806 92909806 C T SLC24A4 Silent p.I215I 0.32 TCGA-AA-A010-01 14 93483065 93483065 C T ITPK1 Missense_Mutation p.D68N 0.35 tolerated(0.11) possibly_damaging(0.552) TCGA-AA-A010-01 14 93714872 93714872 G A BTBD7 Nonsense_Mutation p.R691* 0.42 TCGA-AA-A010-01 14 93730195 93730195 G A BTBD7 Missense_Mutation p.S436L 0.41 deleterious(0) possibly_damaging(0.793) TCGA-AA-A010-01 14 94004429 94004429 G T UNC79 Missense_Mutation p.R229M 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 14 94060055 94060055 C T UNC79 Missense_Mutation p.S844F 0.36 deleterious(0) possibly_damaging(0.857) TCGA-AA-A010-01 14 94088042 94088042 G T UNC79 Missense_Mutation p.S1311I 0.37 deleterious_low_confidence(0) possibly_damaging(0.658) TCGA-AA-A010-01 14 94107570 94107570 G T UNC79 Missense_Mutation p.E1822D 0.42 tolerated_low_confidence(0.89) benign(0.006) TCGA-AA-A010-01 14 94121597 94121597 G T UNC79 Missense_Mutation p.K1962N 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 14 94155061 94155061 A G UNC79 Silent p.G2182G 0.40 TCGA-AA-A010-01 14 94394689 94394689 G A FAM181A Missense_Mutation p.D82N 0.37 tolerated(0.19) probably_damaging(1) TCGA-AA-A010-01 14 94467592 94467592 G A LINC00521 RNA 0.27 TCGA-AA-A010-01 14 94528554 94528554 C T DDX24 Missense_Mutation p.A378T 0.32 tolerated(0.5) benign(0.025) TCGA-AA-A010-01 14 94731756 94731756 C A PPP4R4 Missense_Mutation p.P744T 0.38 tolerated_low_confidence(0.16) benign(0.011) TCGA-AA-A010-01 14 94750279 94750279 G A SERPINA10 3'UTR 0.40 TCGA-AA-A010-01 14 94844610 94844610 G A SERPINA1 3'UTR 0.58 TCGA-AA-A010-01 14 94914594 94914594 G T SERPINA11 Missense_Mutation p.S173Y 0.41 deleterious(0.03) possibly_damaging(0.462) TCGA-AA-A010-01 14 94914787 94914787 C A SERPINA11 Nonsense_Mutation p.E109* 0.32 TCGA-AA-A010-01 14 94935693 94935693 G T SERPINA9 Missense_Mutation p.S180Y 0.05 deleterious(0.04) probably_damaging(0.915) TCGA-AA-A010-01 14 94962739 94962739 G T SERPINA12 Missense_Mutation p.F292L 0.35 tolerated(1) benign(0.015) TCGA-AA-A010-01 14 94962866 94962866 C T SERPINA12 Missense_Mutation p.G250D 0.37 tolerated(0.14) probably_damaging(0.995) TCGA-AA-A010-01 14 94964270 94964270 C A SERPINA12 Missense_Mutation p.K155N 0.35 deleterious(0) possibly_damaging(0.857) TCGA-AA-A010-01 14 95556938 95556938 T G DICER1 Missense_Mutation p.K1889T 0.37 tolerated(0.8) possibly_damaging(0.861) TCGA-AA-A010-01 14 95574017 95574017 C A DICER1 Missense_Mutation p.S911I 0.40 tolerated(0.24) benign(0.328) TCGA-AA-A010-01 14 95677180 95677180 C T CLMN Nonsense_Mutation p.W215* 0.31 TCGA-AA-A010-01 14 96777914 96777914 T C ATG2B Missense_Mutation p.I1319V 0.38 deleterious(0) possibly_damaging(0.85) TCGA-AA-A010-01 14 96887191 96887191 T G AK7 Missense_Mutation p.D177E 0.34 deleterious(0.04) probably_damaging(0.968) TCGA-AA-A010-01 15 100271585 100271585 C A LYSMD4 Missense_Mutation p.Q79H 0.38 deleterious(0.02) benign(0.307) TCGA-AA-A010-01 15 100514630 100514630 G A ADAMTS17 Missense_Mutation p.R1089C 0.30 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-AA-A010-01 15 101013131 101013131 C T CERS3 Missense_Mutation p.E246K 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 101020246 101020246 C T CERS3 Missense_Mutation p.R138K 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A010-01 15 101109661 101109661 C A LINS Nonsense_Mutation p.E686* 0.35 TCGA-AA-A010-01 15 101114445 101114445 T G LINS Missense_Mutation p.E211D 0.34 tolerated(0.44) probably_damaging(0.988) TCGA-AA-A010-01 15 101115220 101115220 G T LINS Silent p.I201I 0.46 TCGA-AA-A010-01 15 101552302 101552302 C A LRRK1 Missense_Mutation p.F457L 0.38 tolerated(0.77) possibly_damaging(0.897) TCGA-AA-A010-01 15 101598295 101598295 C T LRRK1 Missense_Mutation p.S1543F 0.33 deleterious(0.01) probably_damaging(0.945) TCGA-AA-A010-01 15 101605892 101605892 C T LRRK1 Silent p.V1750V 0.54 TCGA-AA-A010-01 15 101717850 101717850 G A CHSY1 Silent p.L718L 0.39 TCGA-AA-A010-01 15 101718447 101718447 G A CHSY1 Missense_Mutation p.L519F 0.36 tolerated(0.89) benign(0.031) TCGA-AA-A010-01 15 102197161 102197161 G A TARSL2 Nonsense_Mutation p.R742* 0.37 TCGA-AA-A010-01 15 102305074 102305074 G A DNM1P47 RNA 0.24 TCGA-AA-A010-01 15 102346600 102346601 - A OR4F6 Frame_Shift_Ins p.S229Ifs*40 0.29 TCGA-AA-A010-01 15 20643901 20643901 C T HERC2P3 RNA 0.11 TCGA-AA-A010-01 15 20644906 20644906 G T HERC2P3 Intron 0.10 TCGA-AA-A010-01 15 20649487 20649487 G A HERC2P3 RNA 0.11 TCGA-AA-A010-01 15 20649533 20649533 A G HERC2P3 RNA 0.12 TCGA-AA-A010-01 15 20663123 20663123 G A HERC2P3 RNA 0.20 TCGA-AA-A010-01 15 20666487 20666487 C A HERC2P3 RNA 0.09 TCGA-AA-A010-01 15 20739675 20739675 C T GOLGA6L6 Missense_Mutation p.R692Q 0.11 unknown(0) TCGA-AA-A010-01 15 20739743 20739743 C T GOLGA6L6 Silent p.T669T 0.10 TCGA-AA-A010-01 15 20739830 20739830 C A GOLGA6L6 Missense_Mutation p.E640D 0.12 unknown(0) TCGA-AA-A010-01 15 22332651 22332651 G T RP11-69H14.6 RNA 0.09 TCGA-AA-A010-01 15 22332773 22332773 A G RP11-69H14.6 RNA 0.12 TCGA-AA-A010-01 15 22369477 22369477 G T OR4M2 Missense_Mutation p.R301M 0.06 deleterious(0.03) benign(0.332) TCGA-AA-A010-01 15 22369511 22369511 G T OR4M2 Missense_Mutation p.E312D 0.06 tolerated(0.36) benign(0.042) TCGA-AA-A010-01 15 22383136 22383136 C A OR4N4 Missense_Mutation p.L222I 0.11 deleterious(0.03) benign(0.17) TCGA-AA-A010-01 15 22472986 22472986 C A IGHV4OR15-8 Missense_Mutation p.K95N 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A010-01 15 22743113 22743113 C T GOLGA6L1 Nonsense_Mutation p.Q500* 0.27 TCGA-AA-A010-01 15 22743181 22743181 G A GOLGA6L1 Silent p.E522E 0.27 TCGA-AA-A010-01 15 23335659 23335659 C A HERC2P2 Splice_Site 0.16 TCGA-AA-A010-01 15 23412225 23412225 C T RP11-467N20.5 Missense_Mutation p.D78N 0.36 benign(0.342) TCGA-AA-A010-01 15 23445480 23445480 G T AC100757.1 3'Flank 0.33 TCGA-AA-A010-01 15 23810871 23810871 G T MKRN3 5'UTR 0.42 TCGA-AA-A010-01 15 23811972 23811972 G T MKRN3 Missense_Mutation p.R348I 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 24920868 24920868 G A NPAP1 5'UTR 0.30 TCGA-AA-A010-01 15 24922742 24922742 T G NPAP1 Silent p.V576V 0.37 TCGA-AA-A010-01 15 24927510 24927510 C A NPAP1 3'UTR 0.47 TCGA-AA-A010-01 15 24928047 24928047 G T NPAP1 3'UTR 0.39 TCGA-AA-A010-01 15 24928153 24928153 G T NPAP1 3'UTR 0.42 TCGA-AA-A010-01 15 25213166 25213166 G T SNURF Missense_Mutation p.E66D 0.33 deleterious_low_confidence(0.03) benign(0.303) TCGA-AA-A010-01 15 25620762 25620762 C T UBE3A Missense_Mutation p.E74K 0.36 tolerated(0.22) benign(0.011) TCGA-AA-A010-01 15 25958916 25958916 G T ATP10A Nonsense_Mutation p.S750* 0.29 TCGA-AA-A010-01 15 25971098 25971098 C T ATP10A Missense_Mutation p.G327R 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 26026361 26026361 C T ATP10A Silent p.K153K 0.28 TCGA-AA-A010-01 15 26108004 26108004 G A ATP10A Silent p.F80F 0.38 TCGA-AA-A010-01 15 26793182 26793182 A G GABRB3 Missense_Mutation p.S394P 0.08 tolerated(0.1) possibly_damaging(0.566) TCGA-AA-A010-01 15 27018866 27018866 G T GABRB3 5'Flank 0.35 TCGA-AA-A010-01 15 27128535 27128535 C T GABRA5 Missense_Mutation p.R110W 0.51 deleterious(0) possibly_damaging(0.713) TCGA-AA-A010-01 15 28270046 28270046 C T OCA2 Missense_Mutation p.R173H 0.44 tolerated(0.53) benign(0.002) TCGA-AA-A010-01 15 28446658 28446658 G A HERC2 Nonsense_Mutation p.R2554* 0.36 TCGA-AA-A010-01 15 28508136 28508136 C A HERC2 Missense_Mutation p.G684C 0.36 probably_damaging(1) TCGA-AA-A010-01 15 28519445 28519445 G A HERC2 Silent p.V264V 0.43 TCGA-AA-A010-01 15 29544622 29544622 G T FAM189A1 Missense_Mutation p.L113I 0.32 deleterious(0) possibly_damaging(0.874) TCGA-AA-A010-01 15 30918952 30918952 G A ARHGAP11B 5'UTR 0.36 TCGA-AA-A010-01 15 31251273 31251273 C A MTMR10 Missense_Mutation p.K270N 0.43 tolerated(0.07) probably_damaging(0.978) TCGA-AA-A010-01 15 31294254 31294254 C A TRPM1 Missense_Mutation p.R1567I 0.35 deleterious_low_confidence(0.01) benign(0.235) TCGA-AA-A010-01 15 31330015 31330015 C T TRPM1 Missense_Mutation p.G841R 0.44 deleterious(0.02) probably_damaging(0.982) TCGA-AA-A010-01 15 31664249 31664249 A G KLF13 Missense_Mutation p.N205S 0.33 tolerated(0.93) possibly_damaging(0.621) TCGA-AA-A010-01 15 32716898 32716898 T C U8 3'Flank 0.17 TCGA-AA-A010-01 15 32915738 32915738 C T ARHGAP11A Silent p.T82T 0.39 TCGA-AA-A010-01 15 33091020 33091020 T G FMN1 Missense_Mutation p.N1149T 0.33 tolerated(0.51) benign(0.259) TCGA-AA-A010-01 15 34023816 34023816 A C RYR3 Missense_Mutation p.I2449L 0.42 benign(0.052) TCGA-AA-A010-01 15 34118896 34118896 G A RYR3 Missense_Mutation p.E3730K 0.33 probably_damaging(0.975) TCGA-AA-A010-01 15 34388111 34388111 G A EMC7 Missense_Mutation p.S114L 0.40 deleterious(0.01) possibly_damaging(0.838) TCGA-AA-A010-01 15 34395545 34395545 A G PGBD4 Silent p.V271V 0.05 TCGA-AA-A010-01 15 34533501 34533501 A G SLC12A6 Missense_Mutation p.S734P 0.36 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 15 34551142 34551142 C A SLC12A6 Nonsense_Mutation p.E139* 0.38 TCGA-AA-A010-01 15 34628811 34628811 T G SLC12A6 Missense_Mutation p.D24A 0.40 deleterious_low_confidence(0.01) benign(0.272) TCGA-AA-A010-01 15 34628928 34628928 C T SLC12A6 5'UTR 0.36 TCGA-AA-A010-01 15 34640334 34640334 C T NUTM1 Silent p.L61L 0.40 TCGA-AA-A010-01 15 34657359 34657359 G A LPCAT4 Missense_Mutation p.R110C 0.45 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 15 35045311 35045311 C A GJD2 Missense_Mutation p.V112F 0.41 tolerated(0.62) benign(0.157) TCGA-AA-A010-01 15 35045325 35045325 C T GJD2 Missense_Mutation p.R107H 0.41 tolerated(0.06) probably_damaging(0.912) TCGA-AA-A010-01 15 35178830 35178830 C A AQR Missense_Mutation p.R905I 0.31 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 15 35196608 35196608 T G AQR Missense_Mutation p.N644H 0.38 tolerated(0.34) benign(0.002) TCGA-AA-A010-01 15 35273732 35273732 C T ZNF770 Missense_Mutation p.R635Q 0.34 tolerated(0.21) probably_damaging(0.999) TCGA-AA-A010-01 15 35274315 35274315 A G ZNF770 Missense_Mutation p.S441P 0.39 tolerated(0.15) benign(0.003) TCGA-AA-A010-01 15 35275043 35275043 C T ZNF770 Missense_Mutation p.R198Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 38229071 38229071 C T TMCO5A Missense_Mutation p.T55M 0.32 tolerated(0.1) benign(0.045) TCGA-AA-A010-01 15 38591651 38591651 G A SPRED1 Missense_Mutation p.S37N 0.37 deleterious(0) benign(0.015) TCGA-AA-A010-01 15 38631944 38631944 G T SPRED1 Nonsense_Mutation p.E144* 0.24 TCGA-AA-A010-01 15 39546880 39546880 G T C15orf54 3'UTR 0.36 TCGA-AA-A010-01 15 39881161 39881161 T C THBS1 Silent p.D549D 0.33 TCGA-AA-A010-01 15 39881531 39881531 C T THBS1 Silent p.V634V 0.40 TCGA-AA-A010-01 15 39882017 39882017 C T THBS1 Silent p.P646P 0.37 TCGA-AA-A010-01 15 40328298 40328298 T C SRP14 3'UTR 0.53 TCGA-AA-A010-01 15 40384076 40384076 T C BMF Missense_Mutation p.Q156R 0.39 tolerated(1) benign(0.001) TCGA-AA-A010-01 15 40764936 40764936 C A CHST14 3'UTR 0.42 TCGA-AA-A010-01 15 40911171 40911171 C A CASC5 Missense_Mutation p.L139I 0.44 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 15 40913466 40913466 A C CASC5 Missense_Mutation p.N361T 0.40 deleterious(0.01) probably_damaging(0.965) TCGA-AA-A010-01 15 40916745 40916745 A G CASC5 Missense_Mutation p.D1454G 0.43 deleterious(0.04) benign(0.327) TCGA-AA-A010-01 15 40921506 40921506 C A CASC5 Missense_Mutation p.F1899L 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 41066622 41066622 G T DNAJC17 Missense_Mutation p.L205I 0.50 tolerated(0.12) possibly_damaging(0.833) TCGA-AA-A010-01 15 41191388 41191388 G T VPS18 Silent p.V124V 0.33 TCGA-AA-A010-01 15 41289790 41289790 G T INO80 Silent p.I1169I 0.36 TCGA-AA-A010-01 15 41821754 41821754 G A RPAP1 Nonsense_Mutation p.R358* 0.36 TCGA-AA-A010-01 15 41870148 41870148 C T TYRO3 Nonsense_Mutation p.R783* 0.40 TCGA-AA-A010-01 15 41961914 41961914 G T MGA Missense_Mutation p.K274N 0.33 tolerated(0.64) benign(0.006) TCGA-AA-A010-01 15 42028692 42028692 G T MGA Missense_Mutation p.E1410D 0.37 deleterious(0.04) benign(0.011) TCGA-AA-A010-01 15 42116162 42116162 C A MAPKBP1 Silent p.L1378L 0.44 TCGA-AA-A010-01 15 42117599 42117599 C T MAPKBP1 Nonsense_Mutation p.R1504* 0.40 TCGA-AA-A010-01 15 42129007 42129007 C T JMJD7 Missense_Mutation p.A244V 0.47 tolerated(0.17) possibly_damaging(0.487) TCGA-AA-A010-01 15 42137931 42137931 C A PLA2G4B Missense_Mutation p.L716M 0.29 deleterious(0.04) benign(0.025) TCGA-AA-A010-01 15 42193342 42193342 G A EHD4 Missense_Mutation p.S376L 0.28 tolerated(0.08) benign(0.025) TCGA-AA-A010-01 15 42292188 42292188 C T PLA2G4E Missense_Mutation p.R288H 0.39 tolerated(0.13) benign(0.163) TCGA-AA-A010-01 15 42386688 42386688 G A PLA2G4D 5'UTR 0.49 TCGA-AA-A010-01 15 42465940 42465940 G T VPS39 Silent p.V357V 0.39 TCGA-AA-A010-01 15 42652013 42652013 G A CAPN3 Missense_Mutation p.V4I 0.35 tolerated_low_confidence(0.36) benign(0.002) TCGA-AA-A010-01 15 42710089 42710089 C T ZNF106 Missense_Mutation p.D1837N 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A010-01 15 42738796 42738796 C A ZNF106 Nonsense_Mutation p.G1043* 0.37 TCGA-AA-A010-01 15 42742350 42742350 T G ZNF106 Missense_Mutation p.K684T 0.47 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 15 43038447 43038447 C A TTBK2 Missense_Mutation p.R1094I 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 43531055 43531055 G A TGM5 Silent p.D435D 0.33 TCGA-AA-A010-01 15 43571948 43571948 C T TGM7 Missense_Mutation p.S518N 0.25 tolerated(0.33) benign(0.048) TCGA-AA-A010-01 15 43620785 43620785 G A LCMT2 Missense_Mutation p.P635S 0.33 deleterious(0.01) benign(0.342) TCGA-AA-A010-01 15 43678511 43678511 C T TUBGCP4 Missense_Mutation p.R333C 0.49 deleterious(0) possibly_damaging(0.797) TCGA-AA-A010-01 15 43692276 43692276 C T TUBGCP4 Missense_Mutation p.R485C 0.35 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 15 43708558 43708558 C A TP53BP1 Nonsense_Mutation p.E1580* 0.35 TCGA-AA-A010-01 15 43766966 43766966 C A TP53BP1 Splice_Site p.X362_splice 0.42 TCGA-AA-A010-01 15 43773132 43773132 C A TP53BP1 Missense_Mutation p.D154Y 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-AA-A010-01 15 43814895 43814895 G T MAP1A Missense_Mutation p.K408N 0.36 probably_damaging(0.999) TCGA-AA-A010-01 15 43816468 43816468 T C MAP1A Missense_Mutation p.S933P 0.42 benign(0.002) TCGA-AA-A010-01 15 43817292 43817292 G A MAP1A Silent p.E1207E 0.45 TCGA-AA-A010-01 15 43819496 43819496 C T MAP1A Missense_Mutation p.A1942V 0.38 benign(0.003) TCGA-AA-A010-01 15 43831757 43831757 C T PPIP5K1 Missense_Mutation p.S1137N 0.37 tolerated_low_confidence(0.83) benign(0) TCGA-AA-A010-01 15 43909976 43909976 A C STRC Missense_Mutation p.F215V 0.14 tolerated(0.48) benign(0.019) TCGA-AA-A010-01 15 44028388 44028388 G A RNU6-354P 5'Flank 0.36 TCGA-AA-A010-01 15 44065250 44065250 G T ELL3 3'UTR 0.36 TCGA-AA-A010-01 15 44067964 44067964 A G ELL3 Missense_Mutation p.S147P 0.41 tolerated_low_confidence(0.19) benign(0.009) TCGA-AA-A010-01 15 44068119 44068119 G T ELL3 Missense_Mutation p.S95Y 0.34 deleterious(0.04) probably_damaging(0.988) TCGA-AA-A010-01 15 44166306 44166306 A C FRMD5 Missense_Mutation p.F497C 0.43 tolerated(0.16) probably_damaging(0.99) TCGA-AA-A010-01 15 44629966 44629966 G T CASC4 Missense_Mutation p.E194D 0.40 tolerated(0.37) benign(0.004) TCGA-AA-A010-01 15 44892782 44892782 T C SPG11 Missense_Mutation p.K1190R 0.28 tolerated(0.39) benign(0.035) TCGA-AA-A010-01 15 45008529 45008529 C T B2M Nonsense_Mutation p.R117* 0.75 TCGA-AA-A010-01 15 45059759 45059759 C T TRIM69 Missense_Mutation p.S431F 0.40 deleterious(0.03) possibly_damaging(0.845) TCGA-AA-A010-01 15 45396172 45396172 G T DUOX2 Missense_Mutation p.F880L 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A010-01 15 45396534 45396534 C T DUOX2 Silent p.G788G 0.43 TCGA-AA-A010-01 15 45396542 45396542 C T DUOX2 Missense_Mutation p.D786N 0.34 tolerated(0.05) benign(0.403) TCGA-AA-A010-01 15 45408413 45408413 C T DUOXA2 Silent p.V99V 0.34 TCGA-AA-A010-01 15 45410263 45410263 G A DUOXA1 Silent p.R332R 0.43 TCGA-AA-A010-01 15 45444491 45444491 C A DUOX1 Silent p.A1067A 0.40 TCGA-AA-A010-01 15 45456988 45456988 C T DUOX1 Silent p.I1515I 0.35 TCGA-AA-A010-01 15 45654352 45654352 G A GATM Silent p.T409T 0.38 TCGA-AA-A010-01 15 45707797 45707797 G C SPATA5L1 Missense_Mutation p.A553P 0.46 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 45895337 45895337 G T BLOC1S6 Missense_Mutation p.E88D 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 15 45951103 45951103 A G SQRDL Splice_Site 0.27 TCGA-AA-A010-01 15 48056121 48056121 G T SEMA6D Missense_Mutation p.W274C 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 48435191 48435191 C A MYEF2 Nonsense_Mutation p.E573* 0.31 TCGA-AA-A010-01 15 48494536 48494536 C A CTXN2 3'UTR 0.44 TCGA-AA-A010-01 15 48495604 48495604 A C CTXN2 3'UTR 0.24 TCGA-AA-A010-01 15 48500120 48500120 G T SLC12A1 Missense_Mutation p.E68D 0.33 tolerated(0.54) benign(0.006) TCGA-AA-A010-01 15 48522600 48522600 C T SLC12A1 Missense_Mutation p.S292L 0.29 tolerated(0.21) benign(0.165) TCGA-AA-A010-01 15 48737669 48737669 G T FBN1 Missense_Mutation p.L1941I 0.19 possibly_damaging(0.676) TCGA-AA-A010-01 15 48755378 48755378 C A FBN1 Nonsense_Mutation p.E1709* 0.36 TCGA-AA-A010-01 15 48936816 48936816 C T FBN1 Missense_Mutation p.D51N 0.42 probably_damaging(0.978) TCGA-AA-A010-01 15 49034286 49034286 G A CEP152 Missense_Mutation p.R1283C 0.46 tolerated(0.2) probably_damaging(0.999) TCGA-AA-A010-01 15 49054621 49054621 C A CEP152 Missense_Mutation p.L843F 0.32 deleterious(0) possibly_damaging(0.783) TCGA-AA-A010-01 15 49073553 49073553 C A CEP152 Nonsense_Mutation p.E473* 0.38 TCGA-AA-A010-01 15 49172208 49172208 C A EID1 3'UTR 0.40 TCGA-AA-A010-01 15 49172245 49172245 G T EID1 3'UTR 0.36 TCGA-AA-A010-01 15 49309755 49309755 G T SECISBP2L Missense_Mutation p.S414Y 0.31 deleterious(0.01) benign(0.005) TCGA-AA-A010-01 15 50578303 50578303 C T GABPB1 Missense_Mutation p.E333K 0.38 deleterious(0.04) benign(0.032) TCGA-AA-A010-01 15 50853889 50853889 G A TRPM7 Missense_Mutation p.R1862C 0.21 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-AA-A010-01 15 50904985 50904985 T G TRPM7 Missense_Mutation p.K604N 0.35 deleterious(0.01) benign(0.159) TCGA-AA-A010-01 15 51221222 51221222 A T AP4E1 Nonsense_Mutation p.K187* 0.33 TCGA-AA-A010-01 15 51233724 51233724 A C AP4E1 Missense_Mutation p.K343N 0.43 tolerated(0.3) benign(0.044) TCGA-AA-A010-01 15 51535008 51535008 A G CYP19A1 Silent p.L34L 0.30 TCGA-AA-A010-01 15 51750763 51750763 G T DMXL2 Missense_Mutation p.S2692Y 0.29 tolerated(0.56) possibly_damaging(0.847) TCGA-AA-A010-01 15 51766616 51766616 G A DMXL2 Nonsense_Mutation p.R2380* 0.37 TCGA-AA-A010-01 15 51792126 51792126 C A DMXL2 Nonsense_Mutation p.E1099* 0.36 TCGA-AA-A010-01 15 51839448 51839448 T G DMXL2 Missense_Mutation p.K242T 0.38 deleterious(0.02) possibly_damaging(0.475) TCGA-AA-A010-01 15 51860704 51860704 T G DMXL2 Missense_Mutation p.N89H 0.42 tolerated(0.13) probably_damaging(0.978) TCGA-AA-A010-01 15 51914711 51914711 A G DMXL2 Missense_Mutation p.V11A 0.36 tolerated(0.09) benign(0.275) TCGA-AA-A010-01 15 52561977 52561977 C A MYO5C Nonsense_Mutation p.E305* 0.32 TCGA-AA-A010-01 15 52681505 52681505 T C MYO5A Missense_Mutation p.N533S 0.42 tolerated(0.84) benign(0.155) TCGA-AA-A010-01 15 52903334 52903334 G T FAM214A Missense_Mutation p.L175I 0.38 deleterious(0.04) benign(0.008) TCGA-AA-A010-01 15 53907949 53907949 G A WDR72 Silent p.H818H 0.39 TCGA-AA-A010-01 15 54015028 54015028 C T WDR72 Silent p.Q77Q 0.40 TCGA-AA-A010-01 15 54305931 54305931 C A UNC13C Silent p.I277I 0.26 TCGA-AA-A010-01 15 54308027 54308027 C T UNC13C Missense_Mutation p.A976V 0.38 tolerated_low_confidence(0.05) benign(0.025) TCGA-AA-A010-01 15 54542511 54542511 C T UNC13C Missense_Mutation p.T1106I 0.41 deleterious_low_confidence(0) benign(0.129) TCGA-AA-A010-01 15 54626054 54626054 G T UNC13C Missense_Mutation p.K1528N 0.25 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-AA-A010-01 15 54825226 54825226 G T UNC13C Missense_Mutation p.E1886D 0.33 tolerated_low_confidence(1) benign(0.072) TCGA-AA-A010-01 15 55497574 55497574 G A RAB27A 3'UTR 0.43 TCGA-AA-A010-01 15 55497851 55497851 T G RAB27A Missense_Mutation p.I174L 0.34 deleterious(0.04) benign(0.032) TCGA-AA-A010-01 15 55651945 55651945 C T CCPG1 Missense_Mutation p.E676K 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 55965761 55965761 A T PRTG Missense_Mutation p.L554M 0.39 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 15 55965788 55965788 G A PRTG Missense_Mutation p.R545W 0.35 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 15 56032616 56032616 C T PRTG Missense_Mutation p.A121T 0.34 deleterious(0.04) possibly_damaging(0.715) TCGA-AA-A010-01 15 56140591 56140591 C A NEDD4 Missense_Mutation p.E854D 0.30 deleterious(0.01) benign(0.087) TCGA-AA-A010-01 15 56155152 56155152 G T NEDD4 Missense_Mutation p.N558K 0.50 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 56388382 56388382 G A RFX7 Missense_Mutation p.S515F 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 15 56657648 56657648 G T TEX9 5'UTR 0.31 TCGA-AA-A010-01 15 56735675 56735675 C A MNS1 Nonsense_Mutation p.E322* 0.36 TCGA-AA-A010-01 15 57731224 57731224 C T CGNL1 Missense_Mutation p.R343W 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 57809130 57809130 C T CGNL1 Silent p.I852I 0.47 TCGA-AA-A010-01 15 57931724 57931724 T G GCOM1 Missense_Mutation p.V367G 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 58306155 58306155 G T ALDH1A2 Missense_Mutation p.F88L 0.47 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 15 58458911 58458911 C T AQP9 Nonsense_Mutation p.R51* 0.37 TCGA-AA-A010-01 15 58476186 58476186 C A AQP9 Missense_Mutation p.P247H 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 58834828 58834828 G A LIPC Silent p.T184T 0.30 TCGA-AA-A010-01 15 59182491 59182491 G A SLTM Missense_Mutation p.R690C 0.28 deleterious(0) unknown(0) TCGA-AA-A010-01 15 59186172 59186172 A G SLTM Missense_Mutation p.V499A 0.40 tolerated(0.52) unknown(0) TCGA-AA-A010-01 15 59387188 59387188 G T RNF111 3'UTR 0.26 TCGA-AA-A010-01 15 59801066 59801066 C A FAM81A Missense_Mutation p.S183Y 0.39 deleterious(0.04) possibly_damaging(0.865) TCGA-AA-A010-01 15 59911395 59911395 G T GCNT3 Nonsense_Mutation p.E320* 0.37 TCGA-AA-A010-01 15 60795746 60795746 G T RORA Missense_Mutation p.L388I 0.44 deleterious(0.02) possibly_damaging(0.906) TCGA-AA-A010-01 15 62173095 62173095 C T VPS13C Missense_Mutation p.A3279T 0.27 deleterious(0) probably_damaging(0.945) TCGA-AA-A010-01 15 62360950 62360950 C T C2CD4A 3'UTR 0.40 TCGA-AA-A010-01 15 63358254 63358254 G A TPM1 Intron 0.35 TCGA-AA-A010-01 15 63866324 63866324 G A USP3 Missense_Mutation p.E330K 0.34 deleterious(0.05) probably_damaging(0.982) TCGA-AA-A010-01 15 63880634 63880634 A T USP3 Intron 0.43 TCGA-AA-A010-01 15 63880997 63880997 A G USP3 Missense_Mutation p.K438E 0.40 tolerated(0.36) benign(0.338) TCGA-AA-A010-01 15 63904558 63904558 G T HERC1 Missense_Mutation p.F4764L 0.37 benign(0.032) TCGA-AA-A010-01 15 63904589 63904589 A G HERC1 Missense_Mutation p.V4754A 0.40 probably_damaging(0.996) TCGA-AA-A010-01 15 63953993 63953993 G T HERC1 Nonsense_Mutation p.Y3043* 0.36 TCGA-AA-A010-01 15 64041912 64041912 C A HERC1 Nonsense_Mutation p.E661* 0.40 TCGA-AA-A010-01 15 64364990 64364990 A C FAM96A 3'UTR 0.27 TCGA-AA-A010-01 15 64404818 64404818 A T SNX1 Missense_Mutation p.N69I 0.41 deleterious_low_confidence(0.02) benign(0.142) TCGA-AA-A010-01 15 64445516 64445516 G T SNX22 Missense_Mutation p.D113Y 0.42 tolerated(0.06) probably_damaging(0.993) TCGA-AA-A010-01 15 64499737 64499737 G A CSNK1G1 Nonsense_Mutation p.R246* 0.27 TCGA-AA-A010-01 15 64692976 64692976 G A TRIP4 Missense_Mutation p.R218H 0.35 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 15 65342302 65342302 G A SLC51B 5'UTR 0.37 TCGA-AA-A010-01 15 65489951 65489951 C T CILP Silent p.G891G 0.37 TCGA-AA-A010-01 15 65496671 65496671 A C CILP Missense_Mutation p.I285S 0.40 tolerated(0.43) possibly_damaging(0.513) TCGA-AA-A010-01 15 65551623 65551623 T G PARP16 3'UTR 0.22 TCGA-AA-A010-01 15 65748580 65748580 C T DPP8 Missense_Mutation p.A717T 0.30 tolerated(0.3) possibly_damaging(0.785) TCGA-AA-A010-01 15 65771244 65771244 C T DPP8 Missense_Mutation p.R493Q 0.36 tolerated(0.63) benign(0.169) TCGA-AA-A010-01 15 66044735 66044735 C A DENND4A Missense_Mutation p.K181N 0.33 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 15 66386803 66386803 G A MEGF11 Missense_Mutation p.R111C 0.37 deleterious(0) benign(0.277) TCGA-AA-A010-01 15 66420747 66420747 G A MEGF11 5'UTR 0.35 TCGA-AA-A010-01 15 66610948 66610948 A G DIS3L Missense_Mutation p.T386A 0.36 tolerated(1) benign(0) TCGA-AA-A010-01 15 66679747 66679747 A C MAP2K1 Missense_Mutation p.N21T 0.37 tolerated(0.35) benign(0.103) TCGA-AA-A010-01 15 66806401 66806401 G T ZWILCH Missense_Mutation p.V61L 0.37 tolerated(0.2) benign(0.063) TCGA-AA-A010-01 15 66855937 66855937 C T LCTL Missense_Mutation p.E133K 0.38 tolerated(0.86) benign(0.001) TCGA-AA-A010-01 15 67482849 67482849 G T SMAD3 Missense_Mutation p.S418I 0.37 tolerated(0.2) benign(0.006) TCGA-AA-A010-01 15 67482972 67482972 A G SMAD3 3'UTR 0.38 TCGA-AA-A010-01 15 67501869 67501869 G T AAGAB Silent p.G183G 0.32 TCGA-AA-A010-01 15 67524224 67524224 C A AAGAB Nonsense_Mutation p.E155* 0.29 TCGA-AA-A010-01 15 68118832 68118832 C A SKOR1 Missense_Mutation p.F408L 0.35 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-AA-A010-01 15 68624264 68624264 T C ITGA11 Missense_Mutation p.D568G 0.35 deleterious(0) possibly_damaging(0.895) TCGA-AA-A010-01 15 69006341 69006341 C A CORO2B Silent p.V242V 0.41 TCGA-AA-A010-01 15 69006921 69006921 C T CORO2B Silent p.I263I 0.37 TCGA-AA-A010-01 15 69011039 69011039 G A CORO2B Missense_Mutation p.V324I 0.38 tolerated(0.25) benign(0.021) TCGA-AA-A010-01 15 69238490 69238490 C A SPESP1 Missense_Mutation p.T206N 0.31 tolerated(0.33) benign(0.003) TCGA-AA-A010-01 15 69320796 69320796 C T NOX5 Intron 0.46 TCGA-AA-A010-01 15 69323949 69323949 C T NOX5 Silent p.G139G 0.36 TCGA-AA-A010-01 15 69553615 69553615 C T GLCE Missense_Mutation p.A259V 0.21 tolerated(0.18) benign(0) TCGA-AA-A010-01 15 69689834 69689834 C A PAQR5 Silent p.L180L 0.38 TCGA-AA-A010-01 15 70961160 70961160 C T UACA Silent p.A621A 0.42 TCGA-AA-A010-01 15 71124235 71124235 G A LARP6 3'UTR 0.50 TCGA-AA-A010-01 15 71272452 71272452 C T LRRC49 Missense_Mutation p.R317C 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 71302212 71302212 C T LRRC49 Missense_Mutation p.R497C 0.30 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 15 72119284 72119284 G A MYO9A Silent p.V2428V 0.41 TCGA-AA-A010-01 15 72190423 72190423 A C MYO9A Missense_Mutation p.I1474S 0.39 tolerated_low_confidence(0.67) benign(0.001) TCGA-AA-A010-01 15 72502012 72502012 A G PKM Splice_Site p.X189_splice 0.45 TCGA-AA-A010-01 15 72612009 72612009 G A CELF6 Silent p.F69F 0.41 TCGA-AA-A010-01 15 72691128 72691128 C T TMEM202 Silent p.I72I 0.47 TCGA-AA-A010-01 15 72957985 72957985 G A GOLGA6B Missense_Mutation p.V548M 0.11 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 15 73027524 73027524 G T BBS4 Splice_Site p.X369_splice 0.45 TCGA-AA-A010-01 15 73615056 73615056 G A HCN4 Silent p.S1126S 0.39 TCGA-AA-A010-01 15 73621930 73621930 C T HCN4 Missense_Mutation p.R525H 0.35 deleterious(0) unknown(0) TCGA-AA-A010-01 15 74287133 74287133 A G PML 5'UTR 0.34 TCGA-AA-A010-01 15 74290416 74290416 G A PML Silent p.P67P 0.34 TCGA-AA-A010-01 15 74315512 74315512 C T PML Silent p.L316L 0.40 TCGA-AA-A010-01 15 74315614 74315614 G A PML Missense_Mutation p.G350S 0.42 tolerated(0.74) benign(0.016) TCGA-AA-A010-01 15 74427727 74427727 C T ISLR2 3'UTR 0.34 TCGA-AA-A010-01 15 74467299 74467299 G A ISLR Missense_Mutation p.A34T 0.35 deleterious(0) benign(0.37) TCGA-AA-A010-01 15 74467493 74467493 C A ISLR Missense_Mutation p.S98R 0.32 tolerated(0.21) benign(0.378) TCGA-AA-A010-01 15 74836615 74836615 A C ARID3B Missense_Mutation p.K113T 0.18 tolerated(0.07) possibly_damaging(0.506) TCGA-AA-A010-01 15 74964112 74964112 T A EDC3 Silent p.A56A 0.46 TCGA-AA-A010-01 15 75091202 75091202 C T CSK Silent p.G55G 0.41 TCGA-AA-A010-01 15 75498677 75498677 G A C15orf39 Silent p.S96S 0.29 TCGA-AA-A010-01 15 75641262 75641262 G A NEIL1 Missense_Mutation p.E6K 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 75649159 75649159 G A MAN2C1 Nonsense_Mutation p.R895* 0.43 TCGA-AA-A010-01 15 75668018 75668018 G A SIN3A Silent p.L1193L 0.33 TCGA-AA-A010-01 15 75687043 75687043 T A SIN3A Missense_Mutation p.E752V 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 15 75694278 75694278 C T SIN3A Missense_Mutation p.E481K 0.43 deleterious(0) benign(0.233) TCGA-AA-A010-01 15 75766053 75766053 G T PTPN9 Silent p.V395V 0.37 TCGA-AA-A010-01 15 75942589 75942589 G T SNX33 Missense_Mutation p.K382N 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 15 75980127 75980127 G A CSPG4 Silent p.F1093F 0.38 TCGA-AA-A010-01 15 75982142 75982142 G A CSPG4 Missense_Mutation p.P422S 0.36 deleterious(0.03) benign(0.303) TCGA-AA-A010-01 15 75982491 75982491 C T CSPG4 Silent p.T305T 0.37 TCGA-AA-A010-01 15 76209715 76209715 G T FBXO22 Missense_Mutation p.R203I 0.31 tolerated(0.08) possibly_damaging(0.572) TCGA-AA-A010-01 15 76225214 76225214 G T FBXO22 Missense_Mutation p.G328V 0.43 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 15 76585032 76585032 C A ETFA Missense_Mutation p.D66Y 0.42 deleterious(0.02) possibly_damaging(0.717) TCGA-AA-A010-01 15 76726582 76726582 T C SCAPER Missense_Mutation p.T1050A 0.37 tolerated(0.48) benign(0.007) TCGA-AA-A010-01 15 77064115 77064115 C A SCAPER Nonsense_Mutation p.E406* 0.33 TCGA-AA-A010-01 15 77154760 77154760 C A SCAPER Missense_Mutation p.D41Y 0.29 deleterious(0) benign(0.097) TCGA-AA-A010-01 15 77241474 77241474 C A RCN2 Missense_Mutation p.L289M 0.37 tolerated(0.05) possibly_damaging(0.633) TCGA-AA-A010-01 15 77769956 77769956 C A HMG20A Missense_Mutation p.F225L 0.38 deleterious(0) probably_damaging(0.976) TCGA-AA-A010-01 15 77907601 77907601 G A LINGO1 Silent p.G216G 0.44 TCGA-AA-A010-01 15 78397833 78397833 G A CIB2 Intron 0.29 TCGA-AA-A010-01 15 78401701 78401701 G A CIB2 Silent p.I74I 0.41 TCGA-AA-A010-01 15 78471970 78471970 C T ACSBG1 Missense_Mutation p.R469H 0.37 tolerated(0.06) benign(0.082) TCGA-AA-A010-01 15 78475112 78475112 G A ACSBG1 Missense_Mutation p.P227S 0.34 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 15 78526746 78526746 A T ACSBG1 Missense_Mutation p.I33N 0.27 tolerated_low_confidence(0.39) benign(0) TCGA-AA-A010-01 15 78755408 78755408 G A IREB2 Missense_Mutation p.R84H 0.32 deleterious(0) possibly_damaging(0.572) TCGA-AA-A010-01 15 78880727 78880727 A C CHRNA5 Silent p.S125S 0.38 TCGA-AA-A010-01 15 78882364 78882364 G T CHRNA5 Missense_Mutation p.D211Y 0.34 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 15 79068530 79068530 G A ADAMTS7 Missense_Mutation p.T569M 0.41 tolerated(0.15) benign(0.164) TCGA-AA-A010-01 15 79237290 79237290 C T CTSH Missense_Mutation p.A12T 0.37 tolerated_low_confidence(0.06) benign(0.001) TCGA-AA-A010-01 15 79586305 79586305 A G ANKRD34C Missense_Mutation p.N227D 0.33 tolerated(0.49) benign(0.006) TCGA-AA-A010-01 15 79586957 79586957 G A ANKRD34C Missense_Mutation p.R444Q 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 79586993 79586993 C T ANKRD34C Missense_Mutation p.S456F 0.37 deleterious(0) probably_damaging(0.937) TCGA-AA-A010-01 15 79589279 79589279 A C ANKRD34C 3'UTR 0.35 TCGA-AA-A010-01 15 79748612 79748612 G A KIAA1024 Silent p.S41S 0.40 TCGA-AA-A010-01 15 79749656 79749656 C T KIAA1024 Silent p.S389S 0.48 TCGA-AA-A010-01 15 80467417 80467417 C A FAH Silent p.L299L 0.36 TCGA-AA-A010-01 15 81427649 81427649 G A C15orf26 Silent p.G36G 0.34 TCGA-AA-A010-01 15 81440261 81440261 T C C15orf26 Silent p.H233H 0.46 TCGA-AA-A010-01 15 81610767 81610767 G A STARD5 Silent p.F159F 0.29 TCGA-AA-A010-01 15 81636260 81636260 A C TMC3 Missense_Mutation p.F549V 0.35 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 15 82444299 82444299 C T EFTUD1 Silent p.G832G 0.35 TCGA-AA-A010-01 15 82554075 82554076 - T EFTUD1 Frame_Shift_Ins p.N15Kfs*15 0.26 TCGA-AA-A010-01 15 82575237 82575237 C A FAM154B Missense_Mutation p.S344Y 0.41 deleterious(0) probably_damaging(0.976) TCGA-AA-A010-01 15 83218322 83218322 G A CPEB1 Silent p.V429V 0.44 TCGA-AA-A010-01 15 83240346 83240346 A C CPEB1 Intron 0.39 TCGA-AA-A010-01 15 83488130 83488130 T C WHAMM Missense_Mutation p.I387T 0.39 deleterious(0) possibly_damaging(0.771) TCGA-AA-A010-01 15 83495579 83495579 G A WHAMM Missense_Mutation p.R541Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 83519971 83519971 G T HOMER2 Missense_Mutation p.L270I 0.45 deleterious(0.02) benign(0.242) TCGA-AA-A010-01 15 83926262 83926262 G A BNC1 Nonsense_Mutation p.R973* 0.36 TCGA-AA-A010-01 15 83931808 83931808 G T BNC1 Missense_Mutation p.A732D 0.33 deleterious(0.01) benign(0.282) TCGA-AA-A010-01 15 83932149 83932149 A T BNC1 Missense_Mutation p.S618R 0.35 tolerated(0.52) benign(0.003) TCGA-AA-A010-01 15 83932358 83932358 C A BNC1 Nonsense_Mutation p.E549* 0.45 TCGA-AA-A010-01 15 84159577 84159577 G T SH3GL3 Intron 0.38 TCGA-AA-A010-01 15 84237317 84237317 C T SH3GL3 Missense_Mutation p.S75L 0.45 deleterious(0.03) possibly_damaging(0.853) TCGA-AA-A010-01 15 84287098 84287098 C T SH3GL3 3'UTR 0.47 TCGA-AA-A010-01 15 84705707 84705707 C A ADAMTSL3 Missense_Mutation p.S1646Y 0.35 deleterious(0) possibly_damaging(0.492) TCGA-AA-A010-01 15 85165379 85165379 T G ZSCAN2 3'UTR 0.31 TCGA-AA-A010-01 15 85189529 85189529 G T WDR73 Missense_Mutation p.L135I 0.41 tolerated(0.43) possibly_damaging(0.819) TCGA-AA-A010-01 15 85345663 85345663 G A ZNF592 3'UTR 0.36 TCGA-AA-A010-01 15 85438639 85438639 G A SLC28A1 Intron 0.35 TCGA-AA-A010-01 15 85669526 85669526 C T PDE8A Missense_Mutation p.A725V 0.38 deleterious(0) benign(0.391) TCGA-AA-A010-01 15 86225414 86225414 C A AKAP13 Missense_Mutation p.F1713L 0.38 deleterious(0.05) benign(0.294) TCGA-AA-A010-01 15 88483985 88483985 C A NTRK3 Splice_Site p.X529_splice 0.43 TCGA-AA-A010-01 15 88670452 88670452 C T NTRK3 Missense_Mutation p.E412K 0.34 tolerated(0.62) benign(0.004) TCGA-AA-A010-01 15 88679836 88679836 A G NTRK3 Silent p.L209L 0.34 TCGA-AA-A010-01 15 89008964 89008964 C T MRPL46 Missense_Mutation p.R90H 0.39 deleterious(0) probably_damaging(0.953) TCGA-AA-A010-01 15 89395157 89395157 C T ACAN Missense_Mutation p.A720V 0.37 tolerated(0.94) unknown(0) TCGA-AA-A010-01 15 89400975 89400975 C A ACAN Missense_Mutation p.S1720Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 89449889 89449889 C T MFGE8 Missense_Mutation p.D170N 0.40 tolerated(0.34) benign(0.002) TCGA-AA-A010-01 15 89860052 89860052 G A POLG Missense_Mutation p.A1217V 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 90119350 90119350 C T TICRR Missense_Mutation p.A178V 0.36 tolerated(0.16) benign(0.025) TCGA-AA-A010-01 15 90162963 90162963 G A TICRR Missense_Mutation p.R1015Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 15 90167367 90167367 C T TICRR Missense_Mutation p.R1276W 0.33 tolerated(0.07) benign(0.002) TCGA-AA-A010-01 15 90171488 90171488 C A KIF7 3'UTR 0.42 TCGA-AA-A010-01 15 90321660 90321660 G A MESP2 3'UTR 0.31 TCGA-AA-A010-01 15 90335485 90335485 C T ANPEP Missense_Mutation p.A812T 0.39 deleterious(0.03) benign(0.378) TCGA-AA-A010-01 15 90451591 90451591 G A C15orf38-AP3S2 Silent p.F74F 0.35 TCGA-AA-A010-01 15 90610410 90610410 T C ZNF710 Missense_Mutation p.V14A 0.16 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-AA-A010-01 15 90617494 90617494 C T ZNF710 Silent p.G599G 0.23 TCGA-AA-A010-01 15 90761017 90761017 G A SEMA4B Missense_Mutation p.A114T 0.42 tolerated(0.21) benign(0.245) TCGA-AA-A010-01 15 90996086 90996086 C T IQGAP1 Silent p.P414P 0.33 TCGA-AA-A010-01 15 91306252 91306252 C A BLM Missense_Mutation p.L647I 0.33 tolerated(0.07) benign(0.245) TCGA-AA-A010-01 15 91358605 91358605 G T BLM 3'UTR 0.37 TCGA-AA-A010-01 15 91453861 91453861 G A MAN2A2 Missense_Mutation p.D570N 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 15 92977586 92977586 A G ST8SIA2 Missense_Mutation p.T91A 0.40 possibly_damaging(0.881) TCGA-AA-A010-01 15 93015742 93015742 C A C15orf32 Missense_Mutation p.L122I 0.42 tolerated_low_confidence(0.46) possibly_damaging(0.801) TCGA-AA-A010-01 15 93536102 93536102 G T CHD2 Missense_Mutation p.A1157S 0.36 deleterious(0.01) benign(0.358) TCGA-AA-A010-01 15 96869439 96869439 G A NR2F2 5'Flank 0.34 TCGA-AA-A010-01 15 97328388 97328388 C A SPATA8 3'UTR 0.42 TCGA-AA-A010-01 15 98982944 98982944 C A FAM169B Missense_Mutation p.K165N 0.36 tolerated(0.14) benign(0.007) TCGA-AA-A010-01 15 99514385 99514385 C T PGPEP1L Silent p.E8E 0.39 TCGA-AA-A010-01 15 99671359 99671359 G T SYNM Nonsense_Mutation p.E931* 0.34 TCGA-AA-A010-01 16 11010251 11010251 C T CIITA Silent p.I999I 0.37 TCGA-AA-A010-01 16 11220185 11220185 T G CLEC16A Intron 0.32 TCGA-AA-A010-01 16 11272259 11272259 G T CLEC16A Silent p.T958T 0.38 TCGA-AA-A010-01 16 1129873 1129873 G A SSTR5 Silent p.P335P 0.43 TCGA-AA-A010-01 16 1129928 1129928 G A SSTR5 Missense_Mutation p.A354T 0.48 tolerated(0.57) benign(0.001) TCGA-AA-A010-01 16 11362859 11362859 G A TNP2 Silent p.N87N 0.36 TCGA-AA-A010-01 16 11773066 11773066 C A TXNDC11 Missense_Mutation p.E954D 0.35 tolerated_low_confidence(0.07) probably_damaging(0.931) TCGA-AA-A010-01 16 11931557 11931557 G A RSL1D1 3'UTR 0.37 TCGA-AA-A010-01 16 12059060 12059060 G A TNFRSF17 5'UTR 0.33 TCGA-AA-A010-01 16 1257370 1257370 C T CACNA1H Silent p.F1001F 0.34 TCGA-AA-A010-01 16 1260617 1260617 T G CACNA1H Missense_Mutation p.F1335C 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 16 13010615 13010615 G A SHISA9 Missense_Mutation p.V212I 0.27 tolerated(0.42) probably_damaging(0.911) TCGA-AA-A010-01 16 1374781 1374781 T G UBE2I Missense_Mutation p.F155C 0.42 deleterious(0.05) benign(0.022) TCGA-AA-A010-01 16 1396897 1396897 C T BAIAP3 Silent p.L933L 0.45 TCGA-AA-A010-01 16 1417156 1417156 A C UNKL Intron 0.32 TCGA-AA-A010-01 16 14576652 14576652 G A PARN Missense_Mutation p.R505W 0.42 deleterious(0) probably_damaging(0.966) TCGA-AA-A010-01 16 148266 148266 C A NPRL3 Missense_Mutation p.E267D 0.41 tolerated(0.12) possibly_damaging(0.631) TCGA-AA-A010-01 16 1494357 1494357 G A CCDC154 5'UTR 0.36 TCGA-AA-A010-01 16 1505153 1505153 G A CLCN7 Silent p.F360F 0.33 TCGA-AA-A010-01 16 15180248 15180248 A C RRN3 Missense_Mutation p.F106V 0.35 tolerated(0.25) probably_damaging(0.982) TCGA-AA-A010-01 16 15221407 15221407 C T RP11-1186N24.5 RNA 0.27 TCGA-AA-A010-01 16 1545353 1545353 C T TELO2 Silent p.S114S 0.40 TCGA-AA-A010-01 16 1547366 1547366 G T TELO2 Missense_Mutation p.E229D 0.38 tolerated(0.23) possibly_damaging(0.519) TCGA-AA-A010-01 16 15813511 15813511 G T MYH11 Silent p.I1678I 0.41 TCGA-AA-A010-01 16 15850312 15850312 C T MYH11 Silent p.T552T 0.32 TCGA-AA-A010-01 16 16149977 16149977 G A ABCC1 Missense_Mutation p.R501Q 0.41 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 16 16162052 16162052 G A ABCC1 Missense_Mutation p.E573K 0.34 tolerated(0.31) benign(0.004) TCGA-AA-A010-01 16 16302676 16302676 C A ABCC6 Missense_Mutation p.D235Y 0.33 deleterious(0) probably_damaging(0.962) TCGA-AA-A010-01 16 16418782 16418782 G A PKD1P1 RNA 0.16 TCGA-AA-A010-01 16 1717380 1717380 G A CRAMP1L Silent p.E1027E 0.45 TCGA-AA-A010-01 16 1749062 1749062 C T HN1L 3'UTR 0.38 TCGA-AA-A010-01 16 1818725 1818725 C T MAPK8IP3 Missense_Mutation p.T1304M 0.35 tolerated(0.09) benign(0.359) TCGA-AA-A010-01 16 1823004 1823004 C A MRPS34 Missense_Mutation p.E39D 0.29 tolerated(0.19) benign(0.013) TCGA-AA-A010-01 16 18573240 18573240 G A NOMO2 Silent p.G41G 0.40 TCGA-AA-A010-01 16 18841340 18841340 C T SMG1 Missense_Mutation p.R3014Q 0.40 tolerated(0.05) possibly_damaging(0.859) TCGA-AA-A010-01 16 18847356 18847356 C T SMG1 Silent p.P2652P 0.37 TCGA-AA-A010-01 16 19131878 19131878 C T ITPRIPL2 3'UTR 0.31 TCGA-AA-A010-01 16 19315454 19315454 A G CLEC19A Missense_Mutation p.T109A 0.29 tolerated(0.07) benign(0.42) TCGA-AA-A010-01 16 19543754 19543754 G T CCP110 Missense_Mutation p.R53I 0.39 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 16 19680485 19680485 A C C16orf62 Missense_Mutation p.D831A 0.40 deleterious(0) possibly_damaging(0.802) TCGA-AA-A010-01 16 19883244 19883244 G A GPRC5B Silent p.F308F 0.36 TCGA-AA-A010-01 16 2004063 2004063 C A RPL3L Missense_Mutation p.K30N 0.45 deleterious(0) probably_damaging(0.929) TCGA-AA-A010-01 16 2011672 2011672 C T NDUFB10 Intron 0.42 TCGA-AA-A010-01 16 2013210 2013210 C T RPS2 Silent p.E105E 0.38 TCGA-AA-A010-01 16 20352570 20352570 C A UMOD Missense_Mutation p.G474C 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 16 20396088 20396088 G A PDILT Silent p.I96I 0.33 TCGA-AA-A010-01 16 20566707 20566707 C T ACSM2B Silent p.G160G 0.35 TCGA-AA-A010-01 16 20673143 20673143 C T ACSM1 Missense_Mutation p.R322Q 0.23 deleterious(0.04) benign(0.426) TCGA-AA-A010-01 16 20802235 20802235 G A ACSM3 Intron 0.40 TCGA-AA-A010-01 16 20809660 20809660 C A ERI2 Nonsense_Mutation p.E488* 0.42 TCGA-AA-A010-01 16 20810034 20810034 G A ERI2 Missense_Mutation p.A363V 0.37 tolerated(0.9) benign(0.004) TCGA-AA-A010-01 16 20811303 20811303 C A ERI2 Nonsense_Mutation p.E207* 0.43 TCGA-AA-A010-01 16 20827513 20827513 G A AC004381.6 Missense_Mutation p.D152N 0.38 tolerated(0.31) benign(0.001) TCGA-AA-A010-01 16 20935564 20935564 C A LYRM1 3'UTR 0.54 TCGA-AA-A010-01 16 21115869 21115869 C T DNAH3 Silent p.Q763Q 0.31 TCGA-AA-A010-01 16 21151886 21151886 C A DNAH3 Nonsense_Mutation p.E223* 0.33 TCGA-AA-A010-01 16 21185437 21185437 C A TMEM159 Silent p.V124V 0.39 TCGA-AA-A010-01 16 21208827 21208827 C T ZP2 Missense_Mutation p.E738K 0.32 tolerated(1) benign(0) TCGA-AA-A010-01 16 21213322 21213322 T C ZP2 Missense_Mutation p.Y437C 0.41 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 16 21213536 21213536 G A ZP2 Silent p.D392D 0.41 TCGA-AA-A010-01 16 21214451 21214451 G T ZP2 Missense_Mutation p.S365Y 0.42 tolerated(0.09) benign(0.039) TCGA-AA-A010-01 16 21218180 21218180 G T ZP2 Silent p.I154I 0.55 TCGA-AA-A010-01 16 2156172 2156173 - G PKD1 Frame_Shift_Ins p.R2544Qfs*51 0.26 TCGA-AA-A010-01 16 2159437 2159437 G T PKD1 Missense_Mutation p.L1911M 0.54 possibly_damaging(0.45) TCGA-AA-A010-01 16 21690360 21690360 G T OTOA Nonsense_Mutation p.E42* 0.32 TCGA-AA-A010-01 16 21742248 21742248 A T OTOA Silent p.T766T 0.35 TCGA-AA-A010-01 16 21747669 21747669 C T OTOA Missense_Mutation p.R797W 0.38 tolerated(0.14) benign(0.017) TCGA-AA-A010-01 16 21964686 21964686 G A UQCRC2 5'UTR 0.33 TCGA-AA-A010-01 16 21987497 21987497 G T UQCRC2 Missense_Mutation p.A353S 0.32 tolerated(0.12) benign(0.06) TCGA-AA-A010-01 16 22545885 22545885 T C NPIPB5 Silent p.D527D 0.12 TCGA-AA-A010-01 16 23079576 23079576 T G USP31 Missense_Mutation p.N1284H 0.39 deleterious_low_confidence(0.02) benign(0.002) TCGA-AA-A010-01 16 23113703 23113703 C T USP31 Missense_Mutation p.D391N 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 2349441 2349441 G A ABCA3 Silent p.N568N 0.36 TCGA-AA-A010-01 16 23498053 23498053 A C GGA2 Nonsense_Mutation p.L213* 0.31 TCGA-AA-A010-01 16 23581879 23581879 G T UBFD1 Missense_Mutation p.D300Y 0.45 deleterious(0) probably_damaging(0.972) TCGA-AA-A010-01 16 2373391 2373391 G T ABCA3 Intron 0.36 TCGA-AA-A010-01 16 24226002 24226002 C T PRKCB Silent p.F629F 0.32 TCGA-AA-A010-01 16 24373029 24373029 T G CACNG3 Missense_Mutation p.F265V 0.44 deleterious(0) benign(0.103) TCGA-AA-A010-01 16 24816054 24816054 A G TNRC6A Missense_Mutation p.N1289S 0.33 tolerated(0.59) benign(0.002) TCGA-AA-A010-01 16 24921797 24921797 C G SLC5A11 Missense_Mutation p.S607R 0.28 tolerated(0.28) benign(0.005) TCGA-AA-A010-01 16 25251704 25251704 G A ZKSCAN2 Silent p.V779V 0.24 TCGA-AA-A010-01 16 27078644 27078644 C T C16orf82 RNA 0.49 TCGA-AA-A010-01 16 27456546 27456546 T C IL21R Missense_Mutation p.V245A 0.31 tolerated(0.2) benign(0.005) TCGA-AA-A010-01 16 27509117 27509117 G A GTF3C1 Missense_Mutation p.P731S 0.42 tolerated(0.58) benign(0.004) TCGA-AA-A010-01 16 2762750 2762750 G T PRSS27 Missense_Mutation p.S248R 0.43 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 2763576 2763576 T C PRSS27 Missense_Mutation p.D211G 0.38 deleterious(0.03) possibly_damaging(0.614) TCGA-AA-A010-01 16 2812046 2812046 C A SRRM2 Missense_Mutation p.S506Y 0.38 unknown(0) TCGA-AA-A010-01 16 28167402 28167402 C T XPO6 Missense_Mutation p.D364N 0.36 tolerated(0.11) benign(0.051) TCGA-AA-A010-01 16 2819046 2819046 T C SRRM2 Silent p.R2594R 0.32 TCGA-AA-A010-01 16 28890838 28890838 G T ATP2A1 Missense_Mutation p.E51D 0.40 deleterious(0.03) benign(0.006) TCGA-AA-A010-01 16 28913549 28913549 C T ATP2A1 Missense_Mutation p.P789L 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 28944305 28944305 C T CD19 Silent p.G143G 0.41 TCGA-AA-A010-01 16 29095979 29095979 G T RRN3P2 RNA 0.39 TCGA-AA-A010-01 16 29097591 29097591 A G RRN3P2 RNA 0.08 TCGA-AA-A010-01 16 29115471 29115471 A C CTB-134H23.3 RNA 0.33 TCGA-AA-A010-01 16 29676626 29676626 C A SPN 3'UTR 0.35 TCGA-AA-A010-01 16 29676732 29676732 C A SPN 3'UTR 0.42 TCGA-AA-A010-01 16 29678280 29678280 A G SPN 3'UTR 0.41 TCGA-AA-A010-01 16 29681390 29681390 C T SPN 3'UTR 0.45 TCGA-AA-A010-01 16 29888654 29888654 A G SEZ6L2 Missense_Mutation p.F616S 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 16 29912582 29912582 G A ASPHD1 Missense_Mutation p.R97H 0.33 tolerated(0.35) probably_damaging(0.98) TCGA-AA-A010-01 16 29913128 29913128 G A ASPHD1 Missense_Mutation p.R279Q 0.36 deleterious(0.04) possibly_damaging(0.751) TCGA-AA-A010-01 16 29992859 29992859 C A TAOK2 Intron 0.47 TCGA-AA-A010-01 16 30005797 30005797 A C HIRIP3 Missense_Mutation p.S223R 0.38 tolerated(0.18) benign(0.003) TCGA-AA-A010-01 16 30018158 30018158 C T DOC2A Missense_Mutation p.A276T 0.46 deleterious(0.03) possibly_damaging(0.745) TCGA-AA-A010-01 16 30128513 30128513 A G MAPK3 Missense_Mutation p.V290A 0.46 tolerated(0.24) benign(0.049) TCGA-AA-A010-01 16 3025436 3025436 G A PKMYT1 Silent p.F252F 0.34 TCGA-AA-A010-01 16 30365007 30365007 G A CD2BP2 Missense_Mutation p.L164F 0.17 tolerated(0.22) benign(0.026) TCGA-AA-A010-01 16 30365053 30365053 G T CD2BP2 Silent p.G148G 0.32 TCGA-AA-A010-01 16 30365603 30365603 C T CD2BP2 Missense_Mutation p.R40H 0.40 deleterious(0.01) probably_damaging(0.964) TCGA-AA-A010-01 16 30532879 30532879 C A ITGAL Missense_Mutation p.P1136T 0.38 tolerated(0.11) benign(0.005) TCGA-AA-A010-01 16 30667388 30667388 G A PRR14 Missense_Mutation p.R505H 0.36 tolerated(0.06) possibly_damaging(0.566) TCGA-AA-A010-01 16 30735527 30735527 G T SRCAP Missense_Mutation p.Q1594H 0.37 benign(0.216) TCGA-AA-A010-01 16 30747712 30747712 A G SRCAP Silent p.E2307E 0.45 TCGA-AA-A010-01 16 30762542 30762542 C T PHKG2 Missense_Mutation p.R71W 0.32 deleterious(0.02) possibly_damaging(0.898) TCGA-AA-A010-01 16 3076524 3076524 C T THOC6 Missense_Mutation p.S140F 0.46 deleterious(0.02) benign(0.211) TCGA-AA-A010-01 16 30774565 30774565 G T RNF40 Missense_Mutation p.D87Y 0.43 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 16 30776588 30776588 C T RNF40 Silent p.I286I 0.36 TCGA-AA-A010-01 16 30795558 30795558 C T ZNF629 Missense_Mutation p.E31K 0.40 tolerated_low_confidence(0.05) benign(0.137) TCGA-AA-A010-01 16 31045102 31045102 C A STX4 5'UTR 0.35 TCGA-AA-A010-01 16 31045139 31045139 A G STX4 Missense_Mutation p.T5A 0.39 tolerated(0.1) benign(0.417) TCGA-AA-A010-01 16 31051129 31051129 G A STX4 3'UTR 0.34 TCGA-AA-A010-01 16 31143521 31143521 T C PRSS8 Missense_Mutation p.I281V 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 16 31150545 31150545 G T PRSS36 Missense_Mutation p.L828I 0.35 tolerated(0.09) benign(0.26) TCGA-AA-A010-01 16 3119040 3119040 G A IL32 Missense_Mutation p.G84D 0.41 tolerated(0.07) probably_damaging(0.947) TCGA-AA-A010-01 16 31235948 31235948 G A TRIM72 Missense_Mutation p.V436M 0.35 tolerated(0.1) benign(0.25) TCGA-AA-A010-01 16 31447580 31447580 C T ZNF843 Silent p.R197R 0.38 TCGA-AA-A010-01 16 31447631 31447631 G A ZNF843 Silent p.S180S 0.37 TCGA-AA-A010-01 16 31475829 31475829 G A ARMC5 Silent p.P495P 0.38 TCGA-AA-A010-01 16 31497118 31497118 G A SLC5A2 Silent p.T124T 0.45 TCGA-AA-A010-01 16 31505083 31505083 G T C16orf58 Missense_Mutation p.L267I 0.39 deleterious(0.03) possibly_damaging(0.491) TCGA-AA-A010-01 16 31519551 31519551 G T C16orf58 Missense_Mutation p.F48L 0.39 tolerated(0.13) benign(0.001) TCGA-AA-A010-01 16 3169811 3169811 C T ZNF205 Missense_Mutation p.R384C 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 16 31895893 31895893 G T ZNF267 Missense_Mutation p.K26N 0.34 deleterious(0.01) possibly_damaging(0.587) TCGA-AA-A010-01 16 31925974 31925974 A C ZNF267 Missense_Mutation p.K135T 0.33 tolerated(0.11) benign(0.044) TCGA-AA-A010-01 16 31926209 31926209 G T ZNF267 Missense_Mutation p.E213D 0.29 tolerated(0.1) benign(0.008) TCGA-AA-A010-01 16 31926513 31926513 A C ZNF267 Missense_Mutation p.I315L 0.28 deleterious(0.04) benign(0.001) TCGA-AA-A010-01 16 31926853 31926853 G A ZNF267 Missense_Mutation p.R428Q 0.33 tolerated(0.17) possibly_damaging(0.741) TCGA-AA-A010-01 16 32265878 32265878 A C TP53TG3D Intron 0.18 TCGA-AA-A010-01 16 32893077 32893077 C A RP11-989E6.3 5'Flank 0.50 TCGA-AA-A010-01 16 3297166 3297166 G T MEFV Missense_Mutation p.F479L 0.42 tolerated(1) benign(0) TCGA-AA-A010-01 16 3350458 3350458 G A TIGD7 Silent p.L53L 0.32 TCGA-AA-A010-01 16 3350489 3350489 A C TIGD7 Missense_Mutation p.F42L 0.40 tolerated(0.31) benign(0.444) TCGA-AA-A010-01 16 3350560 3350560 G T TIGD7 Missense_Mutation p.L19I 0.38 tolerated(0.36) possibly_damaging(0.448) TCGA-AA-A010-01 16 3350599 3350599 T C TIGD7 Missense_Mutation p.K6E 0.38 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 16 3350600 3350600 C A TIGD7 Silent p.G5G 0.40 TCGA-AA-A010-01 16 3406906 3406906 G A OR2C1 3'UTR 0.27 TCGA-AA-A010-01 16 343545 343545 G A AXIN1 Missense_Mutation p.A710V 0.43 tolerated(0.13) benign(0.029) TCGA-AA-A010-01 16 3443701 3443701 C T ZSCAN32 Intron 0.37 TCGA-AA-A010-01 16 34739695 34739695 C A RP11-80F22.15 RNA 0.33 TCGA-AA-A010-01 16 3606946 3606946 C T NLRC3 Missense_Mutation p.A764T 0.37 tolerated(0.09) possibly_damaging(0.855) TCGA-AA-A010-01 16 3606964 3606964 C T NLRC3 Missense_Mutation p.A758T 0.33 deleterious(0.01) benign(0.048) TCGA-AA-A010-01 16 3640648 3640648 C T SLX4 Silent p.P997P 0.33 TCGA-AA-A010-01 16 3641200 3641200 C A SLX4 Missense_Mutation p.E813D 0.46 tolerated(0.11) probably_damaging(0.996) TCGA-AA-A010-01 16 3724427 3724427 C T TRAP1 Silent p.A319A 0.37 TCGA-AA-A010-01 16 3777565 3777565 A T CREBBP 3'UTR 0.30 TCGA-AA-A010-01 16 3781827 3781827 A G CREBBP Missense_Mutation p.S1614P 0.38 unknown(0) TCGA-AA-A010-01 16 3789693 3789693 A G CREBBP Missense_Mutation p.F1389S 0.34 unknown(0) TCGA-AA-A010-01 16 3900826 3900826 G A CREBBP Silent p.S90S 0.33 TCGA-AA-A010-01 16 396834 396834 C T AXIN1 Silent p.S64S 0.36 TCGA-AA-A010-01 16 4516226 4516226 G A NMRAL1 Missense_Mutation p.P153S 0.40 tolerated(0.53) possibly_damaging(0.545) TCGA-AA-A010-01 16 4562572 4562572 G A CDIP1 3'UTR 0.38 TCGA-AA-A010-01 16 46702864 46702864 C T VPS35 Missense_Mutation p.R542Q 0.40 tolerated(0.22) benign(0.007) TCGA-AA-A010-01 16 46836905 46836905 C A C16orf87 Nonsense_Mutation p.E142* 0.36 TCGA-AA-A010-01 16 4700474 4700474 G A MGRN1 Missense_Mutation p.R66H 0.43 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 16 47699855 47699855 C T PHKB Intron 0.46 TCGA-AA-A010-01 16 48117960 48117960 C T ABCC12 Missense_Mutation p.A1285T 0.34 deleterious(0.03) possibly_damaging(0.88) TCGA-AA-A010-01 16 48145383 48145383 C A ABCC12 Nonsense_Mutation p.E749* 0.37 TCGA-AA-A010-01 16 48174664 48174664 C T ABCC12 Silent p.A197A 0.37 TCGA-AA-A010-01 16 48278430 48278430 G T LONP2 Missense_Mutation p.S44I 0.45 tolerated(0.09) possibly_damaging(0.702) TCGA-AA-A010-01 16 48582026 48582026 C A N4BP1 Splice_Site p.X706_splice 0.16 TCGA-AA-A010-01 16 4908611 4908611 G A UBN1 Missense_Mutation p.D127N 0.40 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 16 49313470 49313470 C T CBLN1 Missense_Mutation p.A143T 0.35 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 16 49315216 49315216 G T CBLN1 Missense_Mutation p.S54Y 0.30 deleterious(0) probably_damaging(0.927) TCGA-AA-A010-01 16 4935680 4935680 G A PPL Silent p.Y992Y 0.38 TCGA-AA-A010-01 16 50332831 50332831 G A ADCY7 Missense_Mutation p.R322Q 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 5058624 5058624 T C SEC14L5 Missense_Mutation p.V592A 0.38 tolerated(0.08) benign(0.066) TCGA-AA-A010-01 16 50701987 50701987 C T SNX20 3'Flank 0.33 TCGA-AA-A010-01 16 50784087 50784087 G A CYLD Missense_Mutation p.G160R 0.40 deleterious(0) probably_damaging(0.967) TCGA-AA-A010-01 16 51173149 51173149 C T SALL1 Missense_Mutation p.R995Q 0.30 deleterious(0) possibly_damaging(0.681) TCGA-AA-A010-01 16 51173898 51173898 C T SALL1 Silent p.T745T 0.35 TCGA-AA-A010-01 16 51175306 51175306 C T SALL1 Missense_Mutation p.R276Q 0.34 tolerated(0.6) benign(0.229) TCGA-AA-A010-01 16 5135464 5135464 G A FAM86A 3'UTR 0.09 TCGA-AA-A010-01 16 5145470 5145470 G A FAM86A Missense_Mutation p.R48W 0.43 tolerated(0.12) benign(0.002) TCGA-AA-A010-01 16 53260335 53260335 A C CHD9 Missense_Mutation p.K652Q 0.39 possibly_damaging(0.837) TCGA-AA-A010-01 16 53341697 53341697 C A CHD9 Missense_Mutation p.F2295L 0.37 unknown(0) TCGA-AA-A010-01 16 53352161 53352161 G T CHD9 Missense_Mutation p.R2525I 0.46 unknown(0) TCGA-AA-A010-01 16 53403471 53403471 G T RP11-44F14.1 RNA 0.23 TCGA-AA-A010-01 16 53476577 53476577 G A RBL2 Missense_Mutation p.E127K 0.40 deleterious(0.01) possibly_damaging(0.701) TCGA-AA-A010-01 16 53692704 53692704 G A RPGRIP1L Missense_Mutation p.R444C 0.29 deleterious(0.02) benign(0.042) TCGA-AA-A010-01 16 54145888 54145888 C A FTO 3'UTR 0.50 TCGA-AA-A010-01 16 54317564 54317564 A C IRX3 3'UTR 0.31 TCGA-AA-A010-01 16 55361281 55361281 C T IRX6 Missense_Mutation p.P126L 0.36 deleterious(0) benign(0.314) TCGA-AA-A010-01 16 55613060 55613060 G T LPCAT2 Nonsense_Mutation p.E452* 0.46 TCGA-AA-A010-01 16 55690777 55690777 G A SLC6A2 Silent p.E57E 0.32 TCGA-AA-A010-01 16 55734144 55734144 G A SLC6A2 Missense_Mutation p.A562T 0.36 tolerated(0.19) possibly_damaging(0.798) TCGA-AA-A010-01 16 55844438 55844438 T G CES1 Missense_Mutation p.N437H 0.25 tolerated(0.52) benign(0.001) TCGA-AA-A010-01 16 55880479 55880479 A C CES5A Missense_Mutation p.F567V 0.28 deleterious(0) benign(0.124) TCGA-AA-A010-01 16 55883602 55883602 C T CES5A Missense_Mutation p.D482N 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 55893547 55893547 G T CES5A Missense_Mutation p.P352H 0.37 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 16 56385326 56385326 G A GNAO1 3'Flank 0.36 TCGA-AA-A010-01 16 56481821 56481821 C T NUDT21 Missense_Mutation p.R66H 0.34 tolerated(0.07) benign(0.068) TCGA-AA-A010-01 16 56536710 56536710 C T BBS2 Missense_Mutation p.R272Q 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 56643351 56643351 T G MT2A 3'UTR 0.36 TCGA-AA-A010-01 16 56669727 56669727 G A MT1M 3'Flank 0.45 TCGA-AA-A010-01 16 56686973 56686973 C G MT1B Missense_Mutation p.A61G 0.32 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 16 56947318 56947318 C A SLC12A3 3'UTR 0.39 TCGA-AA-A010-01 16 56977293 56977293 G T HERPUD1 3'UTR 0.49 TCGA-AA-A010-01 16 57003556 57003556 C T CETP Silent p.I134I 0.40 TCGA-AA-A010-01 16 57015105 57015105 G T CETP Missense_Mutation p.K394N 0.27 tolerated(0.08) benign(0.031) TCGA-AA-A010-01 16 57060867 57060867 G T NLRC5 Missense_Mutation p.G671V 0.38 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 16 57062290 57062290 G T NLRC5 Nonsense_Mutation p.E746* 0.39 TCGA-AA-A010-01 16 57485091 57485091 T C COQ9 Silent p.P71P 0.34 TCGA-AA-A010-01 16 57601930 57601930 C T GPR114 Silent p.C328C 0.36 TCGA-AA-A010-01 16 57609354 57609354 C A GPR114 Missense_Mutation p.F497L 0.33 tolerated(0.29) benign(0.061) TCGA-AA-A010-01 16 57738939 57738939 G A CCDC135 Missense_Mutation p.R284H 0.34 tolerated(0.13) benign(0.033) TCGA-AA-A010-01 16 57765196 57765196 G A CCDC135 3'UTR 0.40 TCGA-AA-A010-01 16 58426595 58426595 G T GINS3 Missense_Mutation p.E30D 0.39 deleterious(0.02) possibly_damaging(0.802) TCGA-AA-A010-01 16 58557301 58557301 G A CNOT1 Missense_Mutation p.T2297M 0.30 deleterious(0) benign(0.344) TCGA-AA-A010-01 16 58559906 58559906 C T CNOT1 Missense_Mutation p.R2197H 0.33 deleterious(0) possibly_damaging(0.698) TCGA-AA-A010-01 16 58568124 58568124 C T CNOT1 Missense_Mutation p.R1941Q 0.41 deleterious(0.01) possibly_damaging(0.457) TCGA-AA-A010-01 16 58571116 58571116 T C CNOT1 Missense_Mutation p.Q1808R 0.44 tolerated(0.52) benign(0.003) TCGA-AA-A010-01 16 58577608 58577608 C T CNOT1 Missense_Mutation p.R1446H 0.44 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 16 58585087 58585087 C A CNOT1 Missense_Mutation p.E1097D 0.35 tolerated(1) benign(0.001) TCGA-AA-A010-01 16 58589323 58589323 T G CNOT1 Missense_Mutation p.K908T 0.34 deleterious(0) possibly_damaging(0.71) TCGA-AA-A010-01 16 58589354 58589354 C A CNOT1 Nonsense_Mutation p.E898* 0.34 TCGA-AA-A010-01 16 58612840 58612840 C A CNOT1 Missense_Mutation p.K449N 0.41 tolerated(0.07) possibly_damaging(0.513) TCGA-AA-A010-01 16 618906 618906 G A PIGQ 5'Flank 0.52 TCGA-AA-A010-01 16 66612813 66612813 G T CMTM1 Missense_Mutation p.R257I 0.34 deleterious(0.01) possibly_damaging(0.555) TCGA-AA-A010-01 16 66789052 66789052 G A CCDC79 Missense_Mutation p.R671C 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 16 66811176 66811176 A G CCDC79 Silent p.L305L 0.45 TCGA-AA-A010-01 16 66920116 66920116 C A PDP2 3'UTR 0.32 TCGA-AA-A010-01 16 66950248 66950248 C T CDH16 Missense_Mutation p.D72N 0.37 deleterious(0) possibly_damaging(0.721) TCGA-AA-A010-01 16 66950316 66950316 T C CDH16 Missense_Mutation p.E49G 0.31 tolerated(0.3) benign(0.005) TCGA-AA-A010-01 16 66967941 66967941 C A FAM96B Missense_Mutation p.E57D 0.45 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 16 67006322 67006322 A C CES3 Missense_Mutation p.K452T 0.36 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 16 67165194 67165194 C T C16orf70 Silent p.I79I 0.36 TCGA-AA-A010-01 16 67314128 67314128 C A PLEKHG4 Missense_Mutation p.L61I 0.37 tolerated_low_confidence(0.11) benign(0.172) TCGA-AA-A010-01 16 67321807 67321807 G A PLEKHG4 Missense_Mutation p.R1037H 0.36 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 16 67333454 67333454 A C KCTD19 Missense_Mutation p.C266W 0.44 tolerated(0.11) possibly_damaging(0.851) TCGA-AA-A010-01 16 67354714 67354714 A G KCTD19 Silent p.V26V 0.34 TCGA-AA-A010-01 16 67424212 67424212 C T TPPP3 Silent p.T132T 0.41 TCGA-AA-A010-01 16 67432734 67432734 C T ZDHHC1 Missense_Mutation p.R215Q 0.06 tolerated(0.69) benign(0.008) TCGA-AA-A010-01 16 67432766 67432766 G T ZDHHC1 Missense_Mutation p.F204L 0.41 deleterious(0.03) possibly_damaging(0.908) TCGA-AA-A010-01 16 67650729 67650729 A G CTCF Missense_Mutation p.H345R 0.37 deleterious(0) possibly_damaging(0.531) TCGA-AA-A010-01 16 67680624 67680624 C A RLTPR Missense_Mutation p.F158L 0.37 deleterious(0) possibly_damaging(0.821) TCGA-AA-A010-01 16 67697098 67697098 G T ENKD1 Missense_Mutation p.S336Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 16 677367 677367 C T RAB40C Silent p.C197C 0.39 TCGA-AA-A010-01 16 67877233 67877233 G A THAP11 Missense_Mutation p.R259H 0.40 tolerated(0.07) probably_damaging(0.98) TCGA-AA-A010-01 16 68014152 68014152 T C DPEP3 Silent p.R69R 0.22 TCGA-AA-A010-01 16 68200795 68200795 C T NFATC3 Nonsense_Mutation p.R551* 0.36 TCGA-AA-A010-01 16 68225433 68225433 C A NFATC3 Missense_Mutation p.S954Y 0.38 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-AA-A010-01 16 68266159 68266159 C A ESRP2 Missense_Mutation p.K329N 0.37 tolerated(0.16) probably_damaging(0.928) TCGA-AA-A010-01 16 68335063 68335063 C T SLC7A6 3'UTR 0.38 TCGA-AA-A010-01 16 68358587 68358587 A G PRMT7 Missense_Mutation p.N45S 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 16 68395641 68395641 G A SMPD3 Silent p.G577G 0.41 TCGA-AA-A010-01 16 68597190 68597190 A G ZFP90 Missense_Mutation p.N167S 0.40 tolerated(0.93) benign(0.002) TCGA-AA-A010-01 16 68729808 68729808 C T CDH3 Silent p.I754I 0.38 TCGA-AA-A010-01 16 68914505 68914505 T A TANGO6 Missense_Mutation p.L450H 0.32 deleterious(0) probably_damaging(0.933) TCGA-AA-A010-01 16 69148496 69148496 G A HAS3 Missense_Mutation p.R330Q 0.32 tolerated(0.28) benign(0.005) TCGA-AA-A010-01 16 69184516 69184516 G T CIRH1A Missense_Mutation p.S272I 0.47 tolerated(0.1) benign(0.181) TCGA-AA-A010-01 16 69201239 69201239 T C CIRH1A Intron 0.36 TCGA-AA-A010-01 16 69354657 69354657 C T VPS4A Missense_Mutation p.S279L 0.29 tolerated(0.11) possibly_damaging(0.513) TCGA-AA-A010-01 16 69369012 69369012 G A COG8 Silent p.I275I 0.38 TCGA-AA-A010-01 16 69370542 69370542 C A COG8 Nonsense_Mutation p.E151* 0.38 TCGA-AA-A010-01 16 69375101 69375101 C T NIP7 Missense_Mutation p.P101S 0.43 tolerated(0.08) benign(0.356) TCGA-AA-A010-01 16 69703926 69703926 C A NFAT5 Missense_Mutation p.S472R 0.31 probably_damaging(0.968) TCGA-AA-A010-01 16 69726360 69726360 T G NFAT5 Missense_Mutation p.L878V 0.38 probably_damaging(0.99) TCGA-AA-A010-01 16 69726589 69726589 C T NFAT5 Missense_Mutation p.S954F 0.43 possibly_damaging(0.486) TCGA-AA-A010-01 16 69727586 69727586 T G NFAT5 Missense_Mutation p.I1286M 0.37 benign(0.002) TCGA-AA-A010-01 16 69951778 69951778 C A WWP2 Missense_Mutation p.L391I 0.39 tolerated(0.22) probably_damaging(0.994) TCGA-AA-A010-01 16 69965756 69965756 C T WWP2 Missense_Mutation p.R549C 0.43 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 16 69971486 69971486 C T WWP2 Silent p.S758S 0.39 TCGA-AA-A010-01 16 70172891 70172891 G A PDPR Missense_Mutation p.R427H 0.21 deleterious(0.01) possibly_damaging(0.8) TCGA-AA-A010-01 16 70292093 70292093 C A AARS Missense_Mutation p.A674S 0.42 tolerated(0.33) probably_damaging(0.994) TCGA-AA-A010-01 16 70292971 70292971 C A AARS Missense_Mutation p.R635I 0.39 deleterious(0) possibly_damaging(0.559) TCGA-AA-A010-01 16 70349834 70349834 G T DDX19B Intron 0.32 TCGA-AA-A010-01 16 70359546 70359546 T A DDX19B Missense_Mutation p.F188I 0.35 deleterious(0) possibly_damaging(0.812) TCGA-AA-A010-01 16 70405300 70405300 C T DDX19A Silent p.V403V 0.35 TCGA-AA-A010-01 16 70542317 70542317 G A COG4 Silent p.I351I 0.38 TCGA-AA-A010-01 16 70594430 70594430 G A SF3B3 Missense_Mutation p.R690H 0.39 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 16 70866821 70866821 T C HYDIN Missense_Mutation p.Y4610C 0.51 benign(0.017) TCGA-AA-A010-01 16 70955065 70955065 G T HYDIN Missense_Mutation p.S2405Y 0.39 probably_damaging(0.983) TCGA-AA-A010-01 16 70993720 70993720 T C HYDIN Missense_Mutation p.D1991G 0.13 probably_damaging(0.981) TCGA-AA-A010-01 16 71012837 71012837 G A HYDIN Missense_Mutation p.P1540S 0.28 benign(0.013) TCGA-AA-A010-01 16 712737 712737 G A WDR90 Missense_Mutation p.D1402N 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A010-01 16 71411629 71411629 C T CALB2 Silent p.G107G 0.40 TCGA-AA-A010-01 16 71509404 71509404 C A ZNF19 Missense_Mutation p.R349I 0.36 deleterious(0) possibly_damaging(0.812) TCGA-AA-A010-01 16 71674362 71674362 T A MARVELD3 Missense_Mutation p.V222D 0.05 tolerated(0.08) probably_damaging(0.971) TCGA-AA-A010-01 16 72001137 72001137 T C PKD1L3 RNA 0.24 TCGA-AA-A010-01 16 72120530 72120530 A G TXNL4B 3'UTR 0.35 TCGA-AA-A010-01 16 72146321 72146321 G T DHX38 Missense_Mutation p.K1203N 0.48 tolerated(0.12) benign(0.313) TCGA-AA-A010-01 16 72993861 72993861 C T ZFHX3 Missense_Mutation p.A62T 0.42 benign(0.032) TCGA-AA-A010-01 16 74306 74306 G A WASH4P 5'Flank 0.35 TCGA-AA-A010-01 16 74446766 74446766 T G CLEC18B Missense_Mutation p.N230T 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-AA-A010-01 16 74490600 74490600 C T GLG1 Missense_Mutation p.E1107K 0.46 tolerated(0.12) benign(0.095) TCGA-AA-A010-01 16 74923711 74923711 A C WDR59 Silent p.V695V 0.21 TCGA-AA-A010-01 16 75203545 75203545 C A ZFP1 Missense_Mutation p.N179K 0.41 deleterious(0.04) benign(0.11) TCGA-AA-A010-01 16 75203619 75203619 G T ZFP1 Missense_Mutation p.R204I 0.40 deleterious(0) probably_damaging(0.952) TCGA-AA-A010-01 16 75203871 75203871 G T ZFP1 Missense_Mutation p.R288I 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 16 75263727 75263727 G T BCAR1 Missense_Mutation p.F811L 0.37 tolerated(0.24) probably_damaging(0.996) TCGA-AA-A010-01 16 75633970 75633970 G A ADAT1 3'UTR 0.52 TCGA-AA-A010-01 16 76532501 76532501 C A CNTNAP4 Missense_Mutation p.L686I 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 16 76532538 76532538 G A CNTNAP4 Missense_Mutation p.R698Q 0.40 deleterious(0.04) benign(0.271) TCGA-AA-A010-01 16 76555167 76555167 G T CNTNAP4 Missense_Mutation p.E759D 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 77325265 77325265 C A ADAMTS18 Missense_Mutation p.K1100N 0.36 tolerated(0.1) possibly_damaging(0.628) TCGA-AA-A010-01 16 77389955 77389955 C T ADAMTS18 Missense_Mutation p.G448R 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 77401474 77401474 G T ADAMTS18 Nonsense_Mutation p.Y214* 0.37 TCGA-AA-A010-01 16 77465420 77465420 C T ADAMTS18 Silent p.S89S 0.35 TCGA-AA-A010-01 16 77775776 77775776 C A NUDT7 Missense_Mutation p.L216I 0.31 deleterious(0.04) probably_damaging(0.976) TCGA-AA-A010-01 16 77859154 77859154 T G VAT1L Silent p.R125R 0.42 TCGA-AA-A010-01 16 78011694 78011694 C T VAT1L 3'UTR 0.37 TCGA-AA-A010-01 16 79628577 79628577 G A MAF Intron 0.29 TCGA-AA-A010-01 16 79634380 79634380 A G MAF 5'UTR 0.48 TCGA-AA-A010-01 16 80667127 80667127 G T CDYL2 Missense_Mutation p.A208D 0.44 tolerated(0.11) benign(0.051) TCGA-AA-A010-01 16 80718641 80718641 T C CDYL2 Missense_Mutation p.Y137C 0.35 tolerated(0.14) possibly_damaging(0.906) TCGA-AA-A010-01 16 81077329 81077329 C A ATMIN Missense_Mutation p.S409Y 0.36 deleterious(0) possibly_damaging(0.578) TCGA-AA-A010-01 16 81134809 81134809 C A GCSH 5'Flank 0.31 TCGA-AA-A010-01 16 81150978 81150978 C T PKD1L2 Intron 0.49 TCGA-AA-A010-01 16 81181017 81181017 C T PKD1L2 RNA 0.33 TCGA-AA-A010-01 16 81181844 81181844 C A PKD1L2 RNA 0.34 TCGA-AA-A010-01 16 81324060 81324060 G A BCMO1 Missense_Mutation p.D508N 0.35 tolerated(0.79) benign(0.009) TCGA-AA-A010-01 16 81411184 81411184 C T GAN Missense_Mutation p.R593C 0.36 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AA-A010-01 16 816455 816455 C T MSLN Missense_Mutation p.L399F 0.38 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 16 81969933 81969933 G A PLCG2 Missense_Mutation p.R1001H 0.37 tolerated(0.06) benign(0.182) TCGA-AA-A010-01 16 83251091 83251091 G A CDH13 Missense_Mutation p.A256T 0.37 deleterious(0.03) benign(0.356) TCGA-AA-A010-01 16 83520204 83520204 G A CDH13 Missense_Mutation p.D349N 0.39 tolerated(1) probably_damaging(0.999) TCGA-AA-A010-01 16 83828731 83828731 G A CDH13 3'UTR 0.37 TCGA-AA-A010-01 16 84031849 84031849 G A NECAB2 Missense_Mutation p.E297K 0.31 tolerated(0.42) probably_damaging(0.935) TCGA-AA-A010-01 16 84270397 84270397 G A KCNG4 Missense_Mutation p.A232V 0.39 tolerated(0.7) benign(0.027) TCGA-AA-A010-01 16 84690729 84690729 G A KLHL36 Missense_Mutation p.G106S 0.36 tolerated(0.85) benign(0.006) TCGA-AA-A010-01 16 84793547 84793547 G T USP10 Missense_Mutation p.R482L 0.36 tolerated(0.06) benign(0.109) TCGA-AA-A010-01 16 86612652 86612652 T C FOXL1 Missense_Mutation p.V108A 0.33 deleterious(0) probably_damaging(0.933) TCGA-AA-A010-01 16 8736360 8736360 G A METTL22 Silent p.T316T 0.32 TCGA-AA-A010-01 16 87436811 87436811 A C MAP1LC3B 3'UTR 0.34 TCGA-AA-A010-01 16 88496239 88496239 C T ZNF469 Silent p.H787H 0.38 TCGA-AA-A010-01 16 88497411 88497411 T G ZNF469 Missense_Mutation p.L1150R 0.37 benign(0.099) TCGA-AA-A010-01 16 88498757 88498757 C T ZNF469 Missense_Mutation p.L1599F 0.43 benign(0.005) TCGA-AA-A010-01 16 88502617 88502617 C T ZNF469 Silent p.S2885S 0.39 TCGA-AA-A010-01 16 8866761 8866761 A G ABAT Missense_Mutation p.D314G 0.37 tolerated(0.28) benign(0.031) TCGA-AA-A010-01 16 8889772 8889772 C T TMEM186 3'UTR 0.40 TCGA-AA-A010-01 16 88947718 88947718 A G CBFA2T3 Silent p.G461G 0.28 TCGA-AA-A010-01 16 89254510 89254510 C T CDH15 Silent p.F265F 0.25 TCGA-AA-A010-01 16 89293190 89293190 G T ZNF778 Missense_Mutation p.R137I 0.41 tolerated(0.16) benign(0.125) TCGA-AA-A010-01 16 89355032 89355032 G A ANKRD11 Silent p.V216V 0.23 TCGA-AA-A010-01 16 89590546 89590546 T C SPG7 Missense_Mutation p.F170S 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 16 89653453 89653453 C T CPNE7 Silent p.F365F 0.35 TCGA-AA-A010-01 16 89813245 89813245 G T FANCA Missense_Mutation p.F1134L 0.31 deleterious(0) benign(0.153) TCGA-AA-A010-01 16 89815100 89815100 G A FANCA Silent p.C1105C 0.51 TCGA-AA-A010-01 16 89936740 89936740 G A SPIRE2 3'UTR 0.41 TCGA-AA-A010-01 16 8996252 8996252 C T USP7 Missense_Mutation p.D643N 0.36 tolerated(0.15) benign(0.008) TCGA-AA-A010-01 16 89986519 89986519 G A MC1R Missense_Mutation p.A285T 0.40 tolerated(0.35) benign(0.004) TCGA-AA-A010-01 16 90020734 90020734 G T DEF8 Missense_Mutation p.R86I 0.39 tolerated(0.06) benign(0.195) TCGA-AA-A010-01 16 90021662 90021662 C A DEF8 Missense_Mutation p.F131L 0.29 deleterious(0.04) probably_damaging(0.952) TCGA-AA-A010-01 16 90097808 90097808 G A GAS8 Silent p.E64E 0.39 TCGA-AA-A010-01 16 9858249 9858249 T C GRIN2A Missense_Mutation p.Y1051C 0.35 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 17 10216010 10216010 C T MYH13 Missense_Mutation p.A1416T 0.33 deleterious(0.01) possibly_damaging(0.503) TCGA-AA-A010-01 17 10295923 10295923 C T MYH8 Missense_Mutation p.R1835H 0.42 deleterious(0.03) benign(0.027) TCGA-AA-A010-01 17 10310122 10310122 C T MYH8 Missense_Mutation p.A686T 0.43 tolerated(0.09) benign(0.002) TCGA-AA-A010-01 17 10316031 10316031 C A MYH8 Missense_Mutation p.A388S 0.42 tolerated(0.07) benign(0.305) TCGA-AA-A010-01 17 10318806 10318806 C T MYH8 Missense_Mutation p.E211K 0.42 tolerated(0.42) benign(0.006) TCGA-AA-A010-01 17 10322059 10322059 C T MYH8 Silent p.K138K 0.23 TCGA-AA-A010-01 17 10348418 10348418 C T MYH4 Missense_Mutation p.A1781T 0.43 deleterious(0.03) probably_damaging(1) TCGA-AA-A010-01 17 10359163 10359163 C T MYH4 Missense_Mutation p.R675Q 0.43 deleterious(0) possibly_damaging(0.692) TCGA-AA-A010-01 17 10400685 10400685 C A MYH1 Nonsense_Mutation p.E1484* 0.34 TCGA-AA-A010-01 17 10404997 10404997 C A MYH1 Nonsense_Mutation p.E1088* 0.39 TCGA-AA-A010-01 17 10405129 10405129 T C MYH1 Missense_Mutation p.M1071V 0.37 tolerated(0.06) benign(0.002) TCGA-AA-A010-01 17 10419604 10419604 T G MYH1 Missense_Mutation p.K87T 0.34 deleterious(0.03) benign(0.378) TCGA-AA-A010-01 17 10433214 10433214 C A MYH2 Missense_Mutation p.D959Y 0.37 deleterious(0) probably_damaging(0.952) TCGA-AA-A010-01 17 10438392 10438392 C T MYH2 Silent p.Q726Q 0.33 TCGA-AA-A010-01 17 10438680 10438680 C A MYH2 Missense_Mutation p.E659D 0.23 deleterious(0) benign(0.048) TCGA-AA-A010-01 17 10614254 10614254 C A ADPRM Missense_Mutation p.F274L 0.42 tolerated(0.08) benign(0.354) TCGA-AA-A010-01 17 11532850 11532850 G A DNAH9 Missense_Mutation p.M489I 0.44 benign(0.001) TCGA-AA-A010-01 17 11556149 11556149 G T DNAH9 Missense_Mutation p.D809Y 0.36 benign(0.197) TCGA-AA-A010-01 17 11568239 11568239 C A DNAH9 Missense_Mutation p.F895L 0.30 benign(0.002) TCGA-AA-A010-01 17 11573085 11573085 G T DNAH9 Missense_Mutation p.Q1109H 0.43 benign(0.15) TCGA-AA-A010-01 17 11607693 11607693 G T DNAH9 Missense_Mutation p.K1775N 0.33 benign(0.423) TCGA-AA-A010-01 17 11608363 11608363 C A DNAH9 Missense_Mutation p.L1805I 0.35 benign(0.022) TCGA-AA-A010-01 17 11686982 11686982 T C DNAH9 Missense_Mutation p.S2580P 0.46 possibly_damaging(0.74) TCGA-AA-A010-01 17 1183439 1183439 G A TUSC5 Silent p.S48S 0.41 TCGA-AA-A010-01 17 11881259 11881259 G T ZNF18 3'UTR 0.40 TCGA-AA-A010-01 17 12028657 12028657 G A MAP2K4 Missense_Mutation p.R287H 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 12819216 12819216 G T ARHGAP44 Splice_Site p.X92_splice 0.37 TCGA-AA-A010-01 17 13399822 13399822 G A HS3ST3A1 Missense_Mutation p.R305C 0.17 deleterious(0) benign(0.039) TCGA-AA-A010-01 17 1401406 1401406 G A INPP5K Missense_Mutation p.R263C 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 14249038 14249038 A C HS3ST3B1 3'UTR 0.44 TCGA-AA-A010-01 17 1479889 1479889 A G SLC43A2 Splice_Site p.X516_splice 0.40 TCGA-AA-A010-01 17 15234731 15234731 C A TEKT3 Missense_Mutation p.V58F 0.40 deleterious(0.02) benign(0.372) TCGA-AA-A010-01 17 1543259 1543259 G T SCARF1 Silent p.S362S 0.37 TCGA-AA-A010-01 17 15501988 15501988 G T CDRT1 Intron 0.54 TCGA-AA-A010-01 17 1559773 1559773 G A PRPF8 Silent p.F1902F 0.38 TCGA-AA-A010-01 17 15620243 15620243 G T ZNF286A Missense_Mutation p.R402I 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 15620411 15620411 G T ZNF286A Missense_Mutation p.R458I 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 1584931 1584931 G A PRPF8 Missense_Mutation p.S236L 0.38 deleterious(0.03) benign(0.064) TCGA-AA-A010-01 17 15969004 15969004 C T NCOR1 Silent p.A1582A 0.34 TCGA-AA-A010-01 17 1630429 1630429 A G WDR81 Missense_Mutation p.N726D 0.42 deleterious(0.02) benign(0.22) TCGA-AA-A010-01 17 1630925 1630925 G A WDR81 Missense_Mutation p.R891H 0.39 tolerated(0.22) benign(0.004) TCGA-AA-A010-01 17 16527348 16527348 G A ZNF624 Silent p.A284A 0.38 TCGA-AA-A010-01 17 16667530 16667530 G T CCDC144A Intron 0.17 TCGA-AA-A010-01 17 16703671 16703671 T C CCDC144A 3'UTR 0.19 TCGA-AA-A010-01 17 16705645 16705645 G A CCDC144A 3'UTR 0.22 TCGA-AA-A010-01 17 16734874 16734874 C T KRT16P2 RNA 0.22 TCGA-AA-A010-01 17 1674380 1674380 G A SERPINF1 Missense_Mutation p.S114N 0.27 tolerated(0.92) benign(0) TCGA-AA-A010-01 17 1679891 1679891 G T SERPINF1 Missense_Mutation p.Q284H 0.36 deleterious(0.02) probably_damaging(0.941) TCGA-AA-A010-01 17 16855772 16855772 C T TNFRSF13B Missense_Mutation p.A63T 0.32 tolerated(0.47) benign(0.217) TCGA-AA-A010-01 17 17399557 17399557 T G RASD1 5'UTR 0.38 TCGA-AA-A010-01 17 17415854 17415854 G T PEMT Missense_Mutation p.F145L 0.39 deleterious(0.03) possibly_damaging(0.492) TCGA-AA-A010-01 17 17721621 17721621 T A SREBF1 Missense_Mutation p.K409I 0.38 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 17 17788000 17788000 T G TOM1L2 Missense_Mutation p.E150A 0.32 deleterious(0) possibly_damaging(0.625) TCGA-AA-A010-01 17 1800519 1800519 C T RPA1 3'UTR 0.34 TCGA-AA-A010-01 17 18052105 18052105 C A MYO15A Silent p.T2265T 0.32 TCGA-AA-A010-01 17 18065916 18065916 G A MYO15A Missense_Mutation p.E3179K 0.49 unknown(0) TCGA-AA-A010-01 17 18140250 18140250 C G LLGL1 Silent p.G536G 0.45 TCGA-AA-A010-01 17 18149086 18149086 C T FLII Missense_Mutation p.E1159K 0.31 deleterious(0.01) benign(0.102) TCGA-AA-A010-01 17 18152710 18152710 C T FLII Missense_Mutation p.D597N 0.36 tolerated(0.36) benign(0.002) TCGA-AA-A010-01 17 18219497 18219497 G A SMCR8 Missense_Mutation p.A132T 0.41 deleterious(0.05) probably_damaging(1) TCGA-AA-A010-01 17 18226388 18226388 C T SMCR8 3'UTR 0.38 TCGA-AA-A010-01 17 18541225 18541225 C A TBC1D28 Missense_Mutation p.S150I 0.42 deleterious(0) possibly_damaging(0.905) TCGA-AA-A010-01 17 18541697 18541697 C T TBC1D28 Missense_Mutation p.V106M 0.39 deleterious(0.04) possibly_damaging(0.861) TCGA-AA-A010-01 17 18630914 18630914 C T TRIM16L Missense_Mutation p.A15V 0.37 tolerated(0.12) benign(0.04) TCGA-AA-A010-01 17 18681848 18681848 G T FBXW10 Missense_Mutation p.S799I 0.26 tolerated(0.22) benign(0.019) TCGA-AA-A010-01 17 18702172 18702172 C A TVP23B Silent p.I126I 0.32 TCGA-AA-A010-01 17 18923190 18923190 T C SLC5A10 Silent p.G541G 0.33 TCGA-AA-A010-01 17 19246574 19246574 C T B9D1 3'UTR 0.31 TCGA-AA-A010-01 17 19284979 19284979 C A MAPK7 Missense_Mutation p.S486Y 0.38 deleterious(0) unknown(0) TCGA-AA-A010-01 17 19452958 19452958 A G SLC47A1 Missense_Mutation p.T156A 0.30 tolerated(0.69) benign(0.013) TCGA-AA-A010-01 17 19559682 19559682 C A ALDH3A2 Missense_Mutation p.L159I 0.36 tolerated(0.07) probably_damaging(0.957) TCGA-AA-A010-01 17 19679592 19679592 G T ULK2 3'UTR 0.46 TCGA-AA-A010-01 17 1968803 1968803 C T SMG6 Missense_Mutation p.E1336K 0.37 deleterious(0.01) probably_damaging(0.938) TCGA-AA-A010-01 17 20361595 20361595 C A LGALS9B Missense_Mutation p.Q78H 0.38 deleterious(0.03) benign(0.027) TCGA-AA-A010-01 17 20406403 20406403 C A RP11-434D2.7 3'Flank 0.24 TCGA-AA-A010-01 17 20422914 20422914 C T AC015818.3 RNA 0.17 TCGA-AA-A010-01 17 21320151 21320151 G A KCNJ12 3'UTR 0.14 TCGA-AA-A010-01 17 21321128 21321128 A T KCNJ12 3'UTR 0.12 TCGA-AA-A010-01 17 21438714 21438714 G T C17orf51 Silent p.I171I 0.38 TCGA-AA-A010-01 17 21731121 21731121 G A UBBP4 Silent p.S141S 0.39 TCGA-AA-A010-01 17 21911426 21911426 C A RP11-744K17.9 RNA 0.65 TCGA-AA-A010-01 17 2235464 2235464 G A TSR1 Nonsense_Mutation p.R499* 0.37 TCGA-AA-A010-01 17 2237952 2237952 C A TSR1 Missense_Mutation p.E265D 0.47 tolerated(0.49) benign(0.02) TCGA-AA-A010-01 17 2341440 2341440 G A METTL16 Missense_Mutation p.A284V 0.40 tolerated(0.06) benign(0.113) TCGA-AA-A010-01 17 25638639 25638639 C T WSB1 Missense_Mutation p.A368V 0.25 tolerated(0.1) possibly_damaging(0.589) TCGA-AA-A010-01 17 25934987 25934987 C T KSR1 Missense_Mutation p.T566M 0.30 tolerated(0.12) possibly_damaging(0.663) TCGA-AA-A010-01 17 2599755 2599755 G A CLUH Missense_Mutation p.R716C 0.25 deleterious(0) probably_damaging(0.959) TCGA-AA-A010-01 17 26089906 26089906 C T NOS2 Silent p.R906R 0.39 TCGA-AA-A010-01 17 26115956 26115956 T A NOS2 Missense_Mutation p.K66M 0.42 tolerated(0.09) possibly_damaging(0.491) TCGA-AA-A010-01 17 264117 264117 G T C17orf97 3'UTR 0.32 TCGA-AA-A010-01 17 26669304 26669304 G A TNFAIP1 Missense_Mutation p.E184K 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 17 26681529 26681529 G T POLDIP2 Missense_Mutation p.S108Y 0.44 tolerated(0.2) benign(0.275) TCGA-AA-A010-01 17 26691571 26691571 C T VTN 3'Flank 0.35 TCGA-AA-A010-01 17 26695911 26695911 G A VTN Missense_Mutation p.R270W 0.40 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 17 26726749 26726749 G T SARM1 3'UTR 0.34 TCGA-AA-A010-01 17 26818799 26818799 C T SLC13A2 Silent p.F318F 0.40 TCGA-AA-A010-01 17 26824417 26824417 C A SLC13A2 3'UTR 0.38 TCGA-AA-A010-01 17 26912561 26912561 C A SPAG5 Missense_Mutation p.Q617H 0.34 tolerated(0.19) benign(0.056) TCGA-AA-A010-01 17 26920074 26920074 T C SPAG5 Missense_Mutation p.N63S 0.39 tolerated_low_confidence(0.24) benign(0.033) TCGA-AA-A010-01 17 26940161 26940161 C T SGK494 Missense_Mutation p.V138M 0.28 tolerated(0.24) benign(0.174) TCGA-AA-A010-01 17 26966364 26966364 T G KIAA0100 Missense_Mutation p.S400R 0.41 tolerated(0.6) benign(0.002) TCGA-AA-A010-01 17 27042106 27042106 G C RAB34 Missense_Mutation p.A240G 0.35 deleterious(0.02) benign(0.311) TCGA-AA-A010-01 17 27065717 27065717 C T NEK8 Silent p.S417S 0.40 TCGA-AA-A010-01 17 27225405 27225405 A C DHRS13 3'UTR 0.37 TCGA-AA-A010-01 17 27308924 27308924 G T SEZ6 Silent p.T63T 0.39 TCGA-AA-A010-01 17 27382227 27382227 C A PIPOX Missense_Mutation p.S318R 0.33 tolerated(0.73) benign(0.01) TCGA-AA-A010-01 17 27438768 27438768 A C MYO18A Nonsense_Mutation p.Y904* 0.43 TCGA-AA-A010-01 17 27591538 27591538 G A NUFIP2 3'UTR 0.39 TCGA-AA-A010-01 17 27822685 27822685 G T TAOK1 Missense_Mutation p.K313N 0.40 deleterious(0.04) possibly_damaging(0.454) TCGA-AA-A010-01 17 27861259 27861259 C T TAOK1 Nonsense_Mutation p.R829* 0.40 TCGA-AA-A010-01 17 27904006 27904006 C T GIT1 Missense_Mutation p.E377K 0.44 tolerated(0.26) benign(0.028) TCGA-AA-A010-01 17 27943146 27943146 C T CORO6 Silent p.E370E 0.31 TCGA-AA-A010-01 17 28326992 28326992 G T EFCAB5 Nonsense_Mutation p.E348* 0.24 TCGA-AA-A010-01 17 28380353 28380353 T G EFCAB5 Missense_Mutation p.F461V 0.41 deleterious(0.05) possibly_damaging(0.878) TCGA-AA-A010-01 17 28380824 28380824 C T EFCAB5 Nonsense_Mutation p.R618* 0.34 TCGA-AA-A010-01 17 28400688 28400688 C A EFCAB5 Intron 0.28 TCGA-AA-A010-01 17 28537560 28537560 G T SLC6A4 Missense_Mutation p.F474L 0.39 deleterious(0) benign(0.101) TCGA-AA-A010-01 17 28576158 28576158 G T BLMH Missense_Mutation p.F415L 0.48 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 28601148 28601148 T C BLMH Missense_Mutation p.K238R 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 17 28659067 28659067 T C TMIGD1 Intron 0.36 TCGA-AA-A010-01 17 28769443 28769443 G T CPD Missense_Mutation p.R783I 0.31 deleterious(0.02) possibly_damaging(0.624) TCGA-AA-A010-01 17 28772791 28772791 G T CPD Missense_Mutation p.D876Y 0.44 deleterious(0) possibly_damaging(0.898) TCGA-AA-A010-01 17 29162121 29162121 G A ATAD5 Missense_Mutation p.R341Q 0.35 deleterious(0.04) benign(0.002) TCGA-AA-A010-01 17 29187592 29187592 G T ATAD5 Missense_Mutation p.R1033I 0.36 tolerated(0.14) benign(0.001) TCGA-AA-A010-01 17 292845 292845 G T FAM101B 3'UTR 0.31 TCGA-AA-A010-01 17 29621998 29621998 C T OMG 3'UTR 0.38 TCGA-AA-A010-01 17 29676159 29676159 C T NF1 Missense_Mutation p.A2404V 0.43 tolerated(0.12) benign(0) TCGA-AA-A010-01 17 3030102 3030102 G T OR1G1 Silent p.V248V 0.37 TCGA-AA-A010-01 17 30326149 30326149 T C SUZ12 3'UTR 0.46 TCGA-AA-A010-01 17 30349707 30349707 C T LRRC37B Silent p.A514A 0.33 TCGA-AA-A010-01 17 30648302 30648302 C T RHBDL3 3'UTR 0.34 TCGA-AA-A010-01 17 30658805 30658805 C T C17orf75 Missense_Mutation p.E390K 0.40 deleterious(0) probably_damaging(0.985) TCGA-AA-A010-01 17 30791552 30791552 C A PSMD11 Missense_Mutation p.S135Y 0.30 deleterious(0) benign(0.261) TCGA-AA-A010-01 17 30816799 30816799 G A CDK5R1 3'UTR 0.38 TCGA-AA-A010-01 17 3101712 3101712 G T OR1A2 Missense_Mutation p.Q300H 0.42 tolerated(0.15) benign(0) TCGA-AA-A010-01 17 31048133 31048133 C T MYO1D Silent p.R607R 0.40 TCGA-AA-A010-01 17 31263430 31263430 C T TMEM98 Silent p.S126S 0.36 TCGA-AA-A010-01 17 31324761 31324761 G T SPACA3 Missense_Mutation p.D205Y 0.39 deleterious(0.01) possibly_damaging(0.869) TCGA-AA-A010-01 17 31344643 31344643 G A ASIC2 Missense_Mutation p.L501F 0.24 deleterious(0) benign(0.279) TCGA-AA-A010-01 17 32483665 32483665 A C ASIC2 5'UTR 0.29 TCGA-AA-A010-01 17 32959843 32959843 C T TMEM132E Missense_Mutation p.P445S 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 17 3324724 3324724 C A OR3A3 Missense_Mutation p.T288N 0.35 deleterious(0) possibly_damaging(0.724) TCGA-AA-A010-01 17 33289945 33289945 G A ZNF830 3'UTR 0.43 TCGA-AA-A010-01 17 3337109 3337109 G T OR1E2 Silent p.I9I 0.30 TCGA-AA-A010-01 17 33445555 33445555 C A RAD51D Intron 0.49 TCGA-AA-A010-01 17 33448895 33448895 C A FNDC8 Missense_Mutation p.F61L 0.36 tolerated_low_confidence(0.48) benign(0.004) TCGA-AA-A010-01 17 33477072 33477072 G A UNC45B Missense_Mutation p.D71N 0.29 deleterious(0.01) possibly_damaging(0.838) TCGA-AA-A010-01 17 33479991 33479991 A C UNC45B Missense_Mutation p.K154T 0.46 deleterious(0.02) benign(0.043) TCGA-AA-A010-01 17 33495262 33495262 T A UNC45B Missense_Mutation p.L445H 0.34 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 17 33501307 33501307 C T UNC45B Missense_Mutation p.A628V 0.32 deleterious(0) possibly_damaging(0.588) TCGA-AA-A010-01 17 3352324 3352324 G A SPATA22 Missense_Mutation p.S150L 0.38 tolerated(0.71) benign(0) TCGA-AA-A010-01 17 33586135 33586135 G T SLFN5 Missense_Mutation p.Q142H 0.27 tolerated(0.07) possibly_damaging(0.646) TCGA-AA-A010-01 17 33592263 33592263 G T SLFN5 Missense_Mutation p.V678F 0.29 deleterious(0) benign(0.42) TCGA-AA-A010-01 17 33802473 33802473 T G SLFN12L Missense_Mutation p.K412N 0.37 tolerated(0.07) benign(0.062) TCGA-AA-A010-01 17 3384971 3384971 A G ASPA Missense_Mutation p.D104G 0.44 tolerated(1) benign(0.001) TCGA-AA-A010-01 17 33875448 33875448 C A SLFN14 Missense_Mutation p.S850I 0.44 tolerated(0.06) possibly_damaging(0.736) TCGA-AA-A010-01 17 33879926 33879926 C T SLFN14 Missense_Mutation p.S576N 0.38 tolerated(0.15) benign(0.148) TCGA-AA-A010-01 17 33953792 33953792 C A AP2B1 Missense_Mutation p.T290N 0.45 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 17 34068118 34068118 C T RASL10B Missense_Mutation p.R136C 0.43 deleterious(0.02) possibly_damaging(0.848) TCGA-AA-A010-01 17 34073169 34073169 C A GAS2L2 Silent p.G449G 0.38 TCGA-AA-A010-01 17 34182713 34182713 G T C17orf66 Silent p.L440L 0.33 TCGA-AA-A010-01 17 34195801 34195801 A C C17orf66 5'UTR 0.35 TCGA-AA-A010-01 17 34235693 34235693 G A AC015849.16 RNA 0.40 TCGA-AA-A010-01 17 34881093 34881093 G A MYO19 Missense_Mutation p.S127F 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 34923617 34923617 T C GGNBP2 Splice_Site p.X214_splice 0.36 TCGA-AA-A010-01 17 3493236 3493236 C T SHPK Silent p.T303T 0.36 TCGA-AA-A010-01 17 34945861 34945861 C A GGNBP2 3'UTR 0.29 TCGA-AA-A010-01 17 35295457 35295457 T C LHX1 5'UTR 0.33 TCGA-AA-A010-01 17 35378312 35378312 C T AATF Missense_Mutation p.R516W 0.55 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 35549066 35549066 G A ACACA Missense_Mutation p.R1461C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 35591991 35591991 C T ACACA Missense_Mutation p.A1049T 0.43 tolerated(0.37) benign(0.002) TCGA-AA-A010-01 17 35620651 35620651 C A ACACA Missense_Mutation p.Q422H 0.27 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 17 35902342 35902342 C T SYNRG Silent p.K978K 0.36 TCGA-AA-A010-01 17 35921355 35921355 A T SYNRG Silent p.P535P 0.31 TCGA-AA-A010-01 17 3632833 3632833 A G ITGAE Missense_Mutation p.S951P 0.34 tolerated(0.08) probably_damaging(0.966) TCGA-AA-A010-01 17 36993426 36993426 C A C17orf98 Missense_Mutation p.R92I 0.30 tolerated(0.13) probably_damaging(0.921) TCGA-AA-A010-01 17 37101258 37101258 C T FBXO47 Missense_Mutation p.A250T 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A010-01 17 37243948 37243948 C T PLXDC1 Silent p.R273R 0.30 TCGA-AA-A010-01 17 37371375 37371375 C T STAC2 Missense_Mutation p.S232N 0.46 deleterious(0.03) possibly_damaging(0.548) TCGA-AA-A010-01 17 37441746 37441746 G T FBXL20 Missense_Mutation p.S160Y 0.30 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 17 37627589 37627589 G T CDK12 Missense_Mutation p.D502Y 0.36 probably_damaging(0.969) TCGA-AA-A010-01 17 37899685 37899685 G A GRB7 Missense_Mutation p.D232N 0.35 deleterious(0) possibly_damaging(0.718) TCGA-AA-A010-01 17 37988389 37988389 G A IKZF3 Missense_Mutation p.A8V 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-AA-A010-01 17 38032951 38032951 G A ZPBP2 Silent p.A302A 0.42 TCGA-AA-A010-01 17 38145995 38145995 C A PSMD3 Missense_Mutation p.F230L 0.38 tolerated(0.62) benign(0.003) TCGA-AA-A010-01 17 38183281 38183281 G T MED24 Missense_Mutation p.L513M 0.36 deleterious(0.04) probably_damaging(0.93) TCGA-AA-A010-01 17 38244625 38244625 A G THRA Missense_Mutation p.E285G 0.35 tolerated(0.23) possibly_damaging(0.466) TCGA-AA-A010-01 17 38289816 38289816 G T MSL1 Missense_Mutation p.R266I 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 17 38812799 38812799 G T KRT222 Missense_Mutation p.S248Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 17 38953255 38953255 G A KRT28 Silent p.G297G 0.33 TCGA-AA-A010-01 17 39323678 39323678 C T KRTAP4-3 3'UTR 0.29 TCGA-AA-A010-01 17 39323881 39323881 T C KRTAP4-3 Missense_Mutation p.T182A 0.37 deleterious(0.04) unknown(0) TCGA-AA-A010-01 17 3935529 3935529 G A ZZEF1 Silent p.C2261C 0.34 TCGA-AA-A010-01 17 39406575 39406575 A C KRTAP9-4 3'UTR 0.31 TCGA-AA-A010-01 17 39506865 39506865 A G KRT33A Missense_Mutation p.F52S 0.43 deleterious(0.02) possibly_damaging(0.772) TCGA-AA-A010-01 17 39521250 39521250 C T KRT33B Missense_Mutation p.R293Q 0.38 deleterious(0.01) probably_damaging(0.955) TCGA-AA-A010-01 17 39525878 39525878 C T KRT33B Missense_Mutation p.S42N 0.32 deleterious(0.01) benign(0.091) TCGA-AA-A010-01 17 39553729 39553729 G A KRT31 Silent p.C21C 0.40 TCGA-AA-A010-01 17 39623482 39623482 C T KRT32 Silent p.R32R 0.37 TCGA-AA-A010-01 17 39680076 39680076 C A KRT19 Missense_Mutation p.E374D 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 39723799 39723799 C A KRT9 Missense_Mutation p.G533V 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-A010-01 17 40001381 40001381 C T KLHL10 Missense_Mutation p.R230C 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 40001439 40001439 T C KLHL10 Missense_Mutation p.V249A 0.44 deleterious(0) possibly_damaging(0.484) TCGA-AA-A010-01 17 40148385 40148385 G A DNAJC7 Missense_Mutation p.R117C 0.41 deleterious(0.04) benign(0.02) TCGA-AA-A010-01 17 40174540 40174540 G A NKIRAS2 Missense_Mutation p.R73Q 0.35 deleterious(0.04) benign(0.022) TCGA-AA-A010-01 17 40260122 40260122 G T DHX58 Missense_Mutation p.P228Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 40317486 40317486 C T KCNH4 Missense_Mutation p.R689H 0.38 deleterious(0.02) benign(0.022) TCGA-AA-A010-01 17 40323983 40323983 G A KCNH4 Missense_Mutation p.R340W 0.34 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 17 40345587 40345587 G A GHDC Missense_Mutation p.P5S 0.62 tolerated_low_confidence(0.12) unknown(0) TCGA-AA-A010-01 17 40359740 40359740 C A STAT5B Missense_Mutation p.R638I 0.37 deleterious(0.03) possibly_damaging(0.65) TCGA-AA-A010-01 17 40485938 40485938 G A STAT3 Silent p.I309I 0.36 TCGA-AA-A010-01 17 40500461 40500461 C T STAT3 Missense_Mutation p.S25N 0.43 tolerated(0.5) possibly_damaging(0.775) TCGA-AA-A010-01 17 40722161 40722161 C T MLX Missense_Mutation p.A267V 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A010-01 17 4077244 4077244 A C ANKFY1 Missense_Mutation p.N1003K 0.41 deleterious(0.03) probably_damaging(0.996) TCGA-AA-A010-01 17 40839806 40839806 C T CNTNAP1 Silent p.F371F 0.39 TCGA-AA-A010-01 17 40844586 40844586 A G CNTNAP1 Missense_Mutation p.D867G 0.37 tolerated(0.14) benign(0.09) TCGA-AA-A010-01 17 40857132 40857132 C T EZH1 Missense_Mutation p.E637K 0.32 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 17 41059632 41059632 A G G6PC Missense_Mutation p.T145A 0.24 tolerated(0.37) benign(0.074) TCGA-AA-A010-01 17 41063471 41063471 T G G6PC 3'UTR 0.28 TCGA-AA-A010-01 17 41063512 41063512 G A G6PC 3'UTR 0.33 TCGA-AA-A010-01 17 41131260 41131260 C T PTGES3L-AARSD1 Missense_Mutation p.R115H 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A010-01 17 41143372 41143372 G A RUNDC1 Missense_Mutation p.R494Q 0.38 tolerated(0.18) possibly_damaging(0.876) TCGA-AA-A010-01 17 41168024 41168024 G A VAT1 3'UTR 0.35 TCGA-AA-A010-01 17 41245087 41245087 C A BRCA1 Missense_Mutation p.D821Y 0.36 deleterious(0) probably_damaging(0.959) TCGA-AA-A010-01 17 41570378 41570378 T C DHX8 Missense_Mutation p.F278S 0.33 deleterious(0.03) possibly_damaging(0.516) TCGA-AA-A010-01 17 41610182 41610182 C A ETV4 Missense_Mutation p.S224I 0.39 deleterious(0) possibly_damaging(0.46) TCGA-AA-A010-01 17 4186189 4186189 C A UBE2G1 Nonsense_Mutation p.E152* 0.39 TCGA-AA-A010-01 17 41878964 41878964 G T MPP3 3'UTR 0.60 TCGA-AA-A010-01 17 41886434 41886434 G A MPP3 Silent p.L491L 0.41 TCGA-AA-A010-01 17 41924585 41924585 A C CD300LG Translation_Start_Site p.M1? 0.35 deleterious(0) benign(0.008) TCGA-AA-A010-01 17 41960282 41960282 C T MPP2 Missense_Mutation p.G148R 0.37 deleterious(0.01) probably_damaging(0.96) TCGA-AA-A010-01 17 42114892 42114892 T G LSM12 Missense_Mutation p.K128T 0.35 tolerated(0.95) probably_damaging(0.966) TCGA-AA-A010-01 17 42168727 42168727 T C HDAC5 Missense_Mutation p.E434G 0.42 tolerated(0.06) probably_damaging(0.986) TCGA-AA-A010-01 17 42226050 42226050 A C C17orf53 Missense_Mutation p.Q293H 0.38 deleterious(0.05) benign(0.048) TCGA-AA-A010-01 17 422414 422414 G A VPS53 Missense_Mutation p.S818L 0.30 tolerated(0.07) probably_damaging(0.99) TCGA-AA-A010-01 17 42249464 42249464 G A ASB16 Missense_Mutation p.A118T 0.44 tolerated(0.9) benign(0.078) TCGA-AA-A010-01 17 42288690 42288690 C A UBTF Missense_Mutation p.D353Y 0.33 deleterious(0.01) probably_damaging(0.961) TCGA-AA-A010-01 17 42289018 42289018 G T UBTF Missense_Mutation p.L335M 0.41 tolerated(0.28) possibly_damaging(0.822) TCGA-AA-A010-01 17 42336675 42336675 G A SLC4A1 Silent p.F244F 0.38 TCGA-AA-A010-01 17 42394978 42394978 A C RUNDC3A Intron 0.38 TCGA-AA-A010-01 17 42428493 42428493 C T GRN Missense_Mutation p.A266V 0.40 tolerated(0.25) benign(0.007) TCGA-AA-A010-01 17 42458006 42458006 G A ITGA2B Silent p.I467I 0.39 TCGA-AA-A010-01 17 42460999 42460999 G A ITGA2B Missense_Mutation p.R358C 0.41 deleterious(0.03) possibly_damaging(0.886) TCGA-AA-A010-01 17 42462332 42462332 G T ITGA2B Nonsense_Mutation p.Y261* 0.39 TCGA-AA-A010-01 17 42635329 42635329 C T FZD2 Silent p.F91F 0.46 TCGA-AA-A010-01 17 42636355 42636355 C T FZD2 Silent p.A433A 0.42 TCGA-AA-A010-01 17 42744749 42744749 T G C17orf104 Silent p.P490P 0.27 TCGA-AA-A010-01 17 42756041 42756041 G T CCDC43 3'UTR 0.25 TCGA-AA-A010-01 17 42807327 42807327 G T DBF4B Nonsense_Mutation p.E94* 0.37 TCGA-AA-A010-01 17 42818751 42818751 C A DBF4B Missense_Mutation p.S254Y 0.37 tolerated(0.16) benign(0.282) TCGA-AA-A010-01 17 42853540 42853540 G A ADAM11 Missense_Mutation p.D511N 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 42882279 42882279 C T GJC1 Missense_Mutation p.E303K 0.38 tolerated(0.97) benign(0.041) TCGA-AA-A010-01 17 42982388 42982388 C A FAM187A Missense_Mutation p.F397L 0.36 tolerated(1) benign(0) TCGA-AA-A010-01 17 43005605 43005605 C T KIF18B Missense_Mutation p.V689I 0.38 tolerated(1) benign(0.002) TCGA-AA-A010-01 17 43013438 43013438 C T KIF18B Missense_Mutation p.S92N 0.35 tolerated(0.28) benign(0.023) TCGA-AA-A010-01 17 43228382 43228382 A T HEXIM1 3'UTR 0.38 TCGA-AA-A010-01 17 43332676 43332676 A C SPATA32 Missense_Mutation p.N291K 0.39 tolerated(1) benign(0) TCGA-AA-A010-01 17 43363977 43363977 G A MAP3K14 RNA 0.44 TCGA-AA-A010-01 17 43481021 43481021 G T ARHGAP27 Missense_Mutation p.F193L 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 43923124 43923124 C A SPPL2C Silent p.I284I 0.37 TCGA-AA-A010-01 17 44061159 44061159 C T MAPT Missense_Mutation p.A330V 0.44 tolerated(0.16) benign(0.026) TCGA-AA-A010-01 17 44248365 44248365 C A KANSL1 Missense_Mutation p.R382I 0.22 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 17 44248413 44248413 C T KANSL1 Missense_Mutation p.G366E 0.18 tolerated(0.06) possibly_damaging(0.868) TCGA-AA-A010-01 17 4434030 4434030 C T SPNS2 Missense_Mutation p.T226M 0.36 tolerated(0.23) possibly_damaging(0.841) TCGA-AA-A010-01 17 4439417 4439417 G A SPNS2 Missense_Mutation p.S464N 0.37 deleterious(0) possibly_damaging(0.904) TCGA-AA-A010-01 17 44590516 44590516 G A LRRC37A2 Silent p.S146S 0.23 TCGA-AA-A010-01 17 44626185 44626185 C T LRRC37A2 Missense_Mutation p.A1227V 0.15 tolerated(1) benign(0.001) TCGA-AA-A010-01 17 44845962 44845962 C T WNT3 Silent p.S264S 0.35 TCGA-AA-A010-01 17 44954276 44954276 G T WNT9B 3'UTR 0.36 TCGA-AA-A010-01 17 45199858 45199858 G A CDC27 Missense_Mutation p.R788C 0.33 deleterious(0.03) probably_damaging(0.967) TCGA-AA-A010-01 17 45201281 45201281 C A CDC27 Nonsense_Mutation p.E742* 0.47 TCGA-AA-A010-01 17 45361914 45361914 G T ITGB3 Missense_Mutation p.S156I 0.42 deleterious(0.04) benign(0.311) TCGA-AA-A010-01 17 45367134 45367134 C A ITGB3 Missense_Mutation p.L343I 0.37 tolerated(0.21) possibly_damaging(0.736) TCGA-AA-A010-01 17 45384962 45384962 G A ITGB3 Missense_Mutation p.A754T 0.38 deleterious(0) probably_damaging(0.941) TCGA-AA-A010-01 17 45387512 45387512 A G ITGB3 Missense_Mutation p.N770S 0.36 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 17 4540504 4540504 G A ALOX15 Missense_Mutation p.A286V 0.39 deleterious(0.03) possibly_damaging(0.799) TCGA-AA-A010-01 17 45421657 45421657 C T EFCAB13 Missense_Mutation p.R145W 0.34 tolerated(0.06) benign(0.103) TCGA-AA-A010-01 17 45422399 45422399 C A EFCAB13 Missense_Mutation p.S151Y 0.51 deleterious(0.04) possibly_damaging(0.827) TCGA-AA-A010-01 17 45886771 45886771 C T OSBPL7 Missense_Mutation p.E652K 0.37 deleterious(0) possibly_damaging(0.685) TCGA-AA-A010-01 17 46052565 46052565 G T CDK5RAP3 Missense_Mutation p.E125D 0.45 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 46847378 46847378 T C TTLL6 Missense_Mutation p.T708A 0.36 tolerated(0.06) benign(0.067) TCGA-AA-A010-01 17 4692834 4692834 C T GLTPD2 Missense_Mutation p.A67V 0.33 tolerated(0.36) benign(0.015) TCGA-AA-A010-01 17 46973153 46973153 G A ATP5G1 3'UTR 0.43 TCGA-AA-A010-01 17 46973203 46973203 G A ATP5G1 3'UTR 0.33 TCGA-AA-A010-01 17 4721852 4721852 C A PLD2 Silent p.I691I 0.28 TCGA-AA-A010-01 17 47297281 47297281 G A ABI3 Missense_Mutation p.A204T 0.30 tolerated(0.36) possibly_damaging(0.499) TCGA-AA-A010-01 17 4794374 4794374 T C MINK1 Silent p.T565T 0.42 TCGA-AA-A010-01 17 4798731 4798731 C T MINK1 Nonsense_Mutation p.R1058* 0.42 TCGA-AA-A010-01 17 4802380 4802380 G A CHRNE Silent p.G414G 0.40 TCGA-AA-A010-01 17 48051123 48051123 C A DLX4 Missense_Mutation p.S180Y 0.39 deleterious(0) possibly_damaging(0.578) TCGA-AA-A010-01 17 48051291 48051291 C T DLX4 Missense_Mutation p.S236L 0.38 tolerated(0.44) benign(0) TCGA-AA-A010-01 17 4805383 4805383 C A CHRNE Splice_Site p.X115_splice 0.40 TCGA-AA-A010-01 17 48069206 48069206 C T DLX3 Missense_Mutation p.R180H 0.40 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 17 48191564 48191564 T G SAMD14 Missense_Mutation p.Q338P 0.40 deleterious(0.03) possibly_damaging(0.897) TCGA-AA-A010-01 17 48445516 48445516 C A MRPL27 Missense_Mutation p.K128N 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 17 48465472 48465472 C T LRRC59 Missense_Mutation p.V151M 0.35 tolerated(0.11) benign(0.006) TCGA-AA-A010-01 17 48543229 48543229 G T CHAD Missense_Mutation p.F259L 0.37 tolerated(0.26) benign(0.001) TCGA-AA-A010-01 17 4856604 4856604 T G ENO3 Missense_Mutation p.F93C 0.37 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-AA-A010-01 17 48600990 48600990 A G MYCBPAP Missense_Mutation p.T537A 0.40 tolerated(0.13) possibly_damaging(0.742) TCGA-AA-A010-01 17 48605529 48605529 C T MYCBPAP Nonsense_Mutation p.R812* 0.39 TCGA-AA-A010-01 17 4883472 4883472 T C CAMTA2 Missense_Mutation p.N405S 0.46 tolerated_low_confidence(0.13) probably_damaging(0.989) TCGA-AA-A010-01 17 48917024 48917024 C A WFIKKN2 Silent p.I125I 0.32 TCGA-AA-A010-01 17 49284280 49284280 G A MBTD1 Silent p.V191V 0.31 TCGA-AA-A010-01 17 49708861 49708861 G T CA10 3'UTR 0.40 TCGA-AA-A010-01 17 4995060 4995060 G T ZFP3 Missense_Mutation p.E87D 0.32 tolerated(0.42) benign(0.001) TCGA-AA-A010-01 17 4995411 4995411 G T ZFP3 Missense_Mutation p.K204N 0.43 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 17 4996138 4996138 A G ZFP3 Missense_Mutation p.K447E 0.39 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 17 4997663 4997663 G A ZFP3 3'UTR 0.33 TCGA-AA-A010-01 17 50235311 50235311 C T CA10 5'UTR 0.37 TCGA-AA-A010-01 17 5035570 5035570 C A USP6 Intron 0.43 TCGA-AA-A010-01 17 51900492 51900492 C T KIF2B Missense_Mutation p.A33V 0.31 tolerated(0.16) benign(0.07) TCGA-AA-A010-01 17 51900535 51900535 G A KIF2B Silent p.T47T 0.41 TCGA-AA-A010-01 17 51900744 51900744 C T KIF2B Missense_Mutation p.A117V 0.43 tolerated(0.25) benign(0.002) TCGA-AA-A010-01 17 51901921 51901921 C T KIF2B Silent p.G509G 0.31 TCGA-AA-A010-01 17 53345227 53345227 C T HLF Silent p.D77D 0.30 TCGA-AA-A010-01 17 5383801 5383801 G T DERL2 Missense_Mutation p.F143L 0.43 deleterious(0.05) benign(0.246) TCGA-AA-A010-01 17 54431319 54431319 C A ANKFN1 Silent p.G174G 0.29 TCGA-AA-A010-01 17 54672903 54672903 C A NOG 3'UTR 0.33 TCGA-AA-A010-01 17 5486065 5486065 G A NLRP1 Missense_Mutation p.P125S 0.35 tolerated_low_confidence(0.08) benign(0.098) TCGA-AA-A010-01 17 5487080 5487080 G T NLRP1 Silent p.A66A 0.38 TCGA-AA-A010-01 17 55709265 55709265 C A MSI2 Intron 0.43 TCGA-AA-A010-01 17 55729499 55729499 C T MSI2 Missense_Mutation p.A256V 0.43 tolerated(0.06) possibly_damaging(0.46) TCGA-AA-A010-01 17 55917041 55917041 T G MRPS23 3'UTR 0.37 TCGA-AA-A010-01 17 56405194 56405194 C A BZRAP1 Missense_Mutation p.G30C 0.32 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-AA-A010-01 17 56439945 56439945 G A RNF43 Missense_Mutation p.S216L 0.29 tolerated(0.87) benign(0.003) TCGA-AA-A010-01 17 56499610 56499610 A C HSF5 3'UTR 0.43 TCGA-AA-A010-01 17 56540363 56540363 G T HSF5 Missense_Mutation p.S441Y 0.36 deleterious(0) possibly_damaging(0.59) TCGA-AA-A010-01 17 56621430 56621430 G A C17orf47 Nonsense_Mutation p.R40* 0.34 TCGA-AA-A010-01 17 57043102 57043102 G A PPM1E Missense_Mutation p.E211K 0.39 tolerated(0.05) possibly_damaging(0.729) TCGA-AA-A010-01 17 57060267 57060267 T C PPM1E 3'Flank 0.29 TCGA-AA-A010-01 17 57157115 57157115 C A TRIM37 Missense_Mutation p.G206C 0.38 deleterious(0) probably_damaging(0.94) TCGA-AA-A010-01 17 57288994 57288994 C T SMG8 Missense_Mutation p.L528F 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 57474478 57474478 G A YPEL2 Missense_Mutation p.S96N 0.36 tolerated(0.24) benign(0.005) TCGA-AA-A010-01 17 57758289 57758289 T C CLTC Missense_Mutation p.L979S 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 57775226 57775226 C A PTRH2 Silent p.G38G 0.35 TCGA-AA-A010-01 17 57917380 57917380 T G VMP1 3'UTR 0.31 TCGA-AA-A010-01 17 58073290 58073290 A C RP11-178C3.2 RNA 0.24 TCGA-AA-A010-01 17 58234877 58234877 G A CA4 Missense_Mutation p.D120N 0.38 tolerated(0.61) benign(0.002) TCGA-AA-A010-01 17 58257983 58257983 G T USP32 Missense_Mutation p.L1522M 0.34 tolerated(0.29) benign(0.008) TCGA-AA-A010-01 17 58372158 58372158 A C USP32 Missense_Mutation p.I99M 0.38 deleterious(0.01) benign(0.034) TCGA-AA-A010-01 17 59469515 59469515 G T BCAS3 3'UTR 0.38 TCGA-AA-A010-01 17 59482916 59482916 G A TBX2 Missense_Mutation p.A469T 0.46 tolerated(0.11) probably_damaging(0.984) TCGA-AA-A010-01 17 59556101 59556101 G T TBX4 Missense_Mutation p.E221D 0.40 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 17 59763187 59763187 C A BRIP1 Intron 0.28 TCGA-AA-A010-01 17 59999170 59999170 C A INTS2 Nonsense_Mutation p.E159* 0.34 TCGA-AA-A010-01 17 60028344 60028344 G A MED13 Missense_Mutation p.R2045W 0.39 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 17 60039087 60039087 G T MED13 Silent p.I1706I 0.34 TCGA-AA-A010-01 17 60088302 60088302 C T MED13 Missense_Mutation p.E526K 0.36 tolerated(0.66) possibly_damaging(0.879) TCGA-AA-A010-01 17 60106923 60106923 C A MED13 Missense_Mutation p.R421I 0.32 deleterious(0) possibly_damaging(0.534) TCGA-AA-A010-01 17 60768441 60768441 G A MRC2 Missense_Mutation p.G1382S 0.43 tolerated(0.23) probably_damaging(0.996) TCGA-AA-A010-01 17 60813805 60813805 G T MARCH10 Nonsense_Mutation p.S475* 0.42 TCGA-AA-A010-01 17 60813995 60813995 C A MARCH10 Nonsense_Mutation p.E412* 0.42 TCGA-AA-A010-01 17 60814042 60814042 G A MARCH10 Missense_Mutation p.A396V 0.55 deleterious(0.02) benign(0.15) TCGA-AA-A010-01 17 61482599 61482599 C T TANC2 Missense_Mutation p.R1076C 0.35 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 17 61497366 61497366 C T TANC2 Silent p.F1341F 0.30 TCGA-AA-A010-01 17 61615979 61615979 G A KCNH6 Missense_Mutation p.G637D 0.33 deleterious(0) possibly_damaging(0.905) TCGA-AA-A010-01 17 61619688 61619688 G A KCNH6 Missense_Mutation p.D681N 0.42 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 17 61768521 61768521 C T MAP3K3 Silent p.I455I 0.32 TCGA-AA-A010-01 17 61908971 61908971 G T PSMC5 Missense_Mutation p.V359L 0.30 tolerated(1) benign(0.005) TCGA-AA-A010-01 17 61909453 61909453 G T SMARCD2 3'UTR 0.38 TCGA-AA-A010-01 17 62019085 62019085 G A SCN4A Silent p.F1519F 0.42 TCGA-AA-A010-01 17 62025417 62025417 C T SCN4A Missense_Mutation p.E1051K 0.28 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 17 62029138 62029138 G A SCN4A Silent p.I833I 0.47 TCGA-AA-A010-01 17 62125338 62125338 G T ERN1 Silent p.V803V 0.32 TCGA-AA-A010-01 17 62238159 62238159 A G TEX2 Splice_Site p.X942_splice 0.40 TCGA-AA-A010-01 17 63204096 63204096 T A RGS9 Silent p.A420A 0.34 TCGA-AA-A010-01 17 6328962 6328962 T C AIPL1 Missense_Mutation p.N325D 0.38 tolerated(0.11) benign(0.138) TCGA-AA-A010-01 17 63537616 63537616 C T AXIN2 Missense_Mutation p.R339H 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 6381375 6381375 C T PITPNM3 Missense_Mutation p.D274N 0.48 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 63847973 63847973 T G CEP112 Missense_Mutation p.K781N 0.41 tolerated(0.06) benign(0.059) TCGA-AA-A010-01 17 63957615 63957615 T C CEP112 Missense_Mutation p.N613S 0.36 tolerated(0.21) probably_damaging(0.997) TCGA-AA-A010-01 17 64066057 64066057 C A CEP112 Missense_Mutation p.Q277H 0.32 tolerated(0.06) probably_damaging(0.999) TCGA-AA-A010-01 17 64738797 64738797 C A PRKCA Missense_Mutation p.D481E 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 17 648519 648519 G T GEMIN4 Missense_Mutation p.L922I 0.42 tolerated(0.05) probably_damaging(0.998) TCGA-AA-A010-01 17 6498335 6498335 G A KIAA0753 Silent p.I799I 0.37 TCGA-AA-A010-01 17 65027166 65027166 C A CACNG4 3'UTR 0.42 TCGA-AA-A010-01 17 65105718 65105718 C A HELZ Missense_Mutation p.D1335Y 0.38 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-AA-A010-01 17 6511782 6511782 G T KIAA0753 Missense_Mutation p.A572D 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 17 6553351 6553351 G A MED31 Missense_Mutation p.L52F 0.37 deleterious(0) probably_damaging(0.956) TCGA-AA-A010-01 17 6556241 6556241 G T C17orf100 3'UTR 0.34 TCGA-AA-A010-01 17 65574351 65574351 A G PITPNC1 Missense_Mutation p.D115G 0.38 tolerated(0.05) probably_damaging(0.938) TCGA-AA-A010-01 17 66303443 66303443 A G ARSG 5'UTR 0.38 TCGA-AA-A010-01 17 66539829 66539829 G T AC079210.1 Nonsense_Mutation p.E30* 0.44 TCGA-AA-A010-01 17 66864482 66864482 T G ABCA8 Missense_Mutation p.D1536A 0.37 deleterious(0.01) benign(0.393) TCGA-AA-A010-01 17 66903922 66903922 A C ABCA8 Missense_Mutation p.L706R 0.41 deleterious(0) benign(0.295) TCGA-AA-A010-01 17 66985954 66985954 C A ABCA9 Missense_Mutation p.G1319C 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 67023787 67023787 C A ABCA9 Missense_Mutation p.E595D 0.20 tolerated(0.29) benign(0.075) TCGA-AA-A010-01 17 67028279 67028279 G T ABCA9 Missense_Mutation p.S472Y 0.35 deleterious(0) possibly_damaging(0.708) TCGA-AA-A010-01 17 6703444 6703444 C T TEKT1 Missense_Mutation p.E387K 0.28 tolerated(0.07) possibly_damaging(0.866) TCGA-AA-A010-01 17 67152980 67152980 C T ABCA10 Missense_Mutation p.V1150I 0.33 tolerated(0.76) benign(0.027) TCGA-AA-A010-01 17 67197727 67197727 G T ABCA10 Silent p.I363I 0.40 TCGA-AA-A010-01 17 67197806 67197806 T G ABCA10 Missense_Mutation p.K337T 0.40 deleterious(0.05) benign(0.064) TCGA-AA-A010-01 17 67250486 67250486 C A ABCA5 Missense_Mutation p.S1405I 0.31 tolerated(0.18) possibly_damaging(0.467) TCGA-AA-A010-01 17 67250557 67250557 C A ABCA5 Missense_Mutation p.Q1381H 0.48 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 67286119 67286119 T G ABCA5 Missense_Mutation p.K556Q 0.38 tolerated(0.59) benign(0.1) TCGA-AA-A010-01 17 67290798 67290798 C A ABCA5 Missense_Mutation p.R498I 0.42 deleterious(0) possibly_damaging(0.812) TCGA-AA-A010-01 17 67515486 67515486 G T MAP2K6 Missense_Mutation p.Q93H 0.42 deleterious(0) probably_damaging(0.964) TCGA-AA-A010-01 17 68129048 68129048 G T KCNJ16 Missense_Mutation p.D274Y 0.34 deleterious(0) probably_damaging(0.955) TCGA-AA-A010-01 17 68130811 68130811 A T KCNJ16 3'UTR 0.25 TCGA-AA-A010-01 17 68131199 68131199 C T KCNJ16 3'UTR 0.21 TCGA-AA-A010-01 17 68131600 68131600 C T KCNJ16 3'UTR 0.44 TCGA-AA-A010-01 17 68172801 68172801 T G KCNJ2 3'UTR 0.37 TCGA-AA-A010-01 17 68174594 68174594 C T KCNJ2 3'UTR 0.38 TCGA-AA-A010-01 17 68174799 68174799 G - KCNJ2 3'UTR 0.34 TCGA-AA-A010-01 17 6946061 6946061 A G SLC16A11 Missense_Mutation p.F147S 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 70645389 70645389 G A SLC39A11 Silent p.I237I 0.38 TCGA-AA-A010-01 17 7095298 7095298 G T DLG4 Silent p.V673V 0.44 TCGA-AA-A010-01 17 71166929 71166929 A G SSTR2 3'UTR 0.47 TCGA-AA-A010-01 17 71198000 71198000 C T COG1 Silent p.S678S 0.33 TCGA-AA-A010-01 17 71199866 71199866 G A COG1 Missense_Mutation p.M772I 0.35 tolerated(0.15) benign(0.006) TCGA-AA-A010-01 17 7121917 7121917 G A DLG4 Missense_Mutation p.R21W 0.37 deleterious(0.03) benign(0.101) TCGA-AA-A010-01 17 71239108 71239108 C T C17orf80 Silent p.F565F 0.27 TCGA-AA-A010-01 17 7127040 7127040 C A ACADVL Silent p.I443I 0.45 TCGA-AA-A010-01 17 71382028 71382028 G A SDK2 Silent p.S1509S 0.35 TCGA-AA-A010-01 17 71382660 71382660 G A SDK2 Silent p.F1474F 0.23 TCGA-AA-A010-01 17 71398248 71398248 C A SDK2 Missense_Mutation p.E839D 0.38 tolerated(0.25) benign(0.075) TCGA-AA-A010-01 17 71443789 71443789 T C SDK2 Missense_Mutation p.N193S 0.40 deleterious(0.04) probably_damaging(0.981) TCGA-AA-A010-01 17 7149674 7149674 C T CTDNEP1 Missense_Mutation p.E126K 0.37 tolerated(0.1) benign(0.081) TCGA-AA-A010-01 17 7187813 7187813 G A SLC2A4 Missense_Mutation p.R246H 0.43 deleterious(0.02) possibly_damaging(0.667) TCGA-AA-A010-01 17 7194464 7194464 C T YBX2 Missense_Mutation p.R136H 0.41 tolerated(0.12) possibly_damaging(0.812) TCGA-AA-A010-01 17 7216434 7216434 G A GPS2 Missense_Mutation p.R272C 0.34 deleterious_low_confidence(0.04) benign(0) TCGA-AA-A010-01 17 7221410 7221410 C T NEURL4 Missense_Mutation p.R1345H 0.35 deleterious(0) benign(0.374) TCGA-AA-A010-01 17 72249275 72249275 C T TTYH2 Missense_Mutation p.R439C 0.49 deleterious(0.01) benign(0.261) TCGA-AA-A010-01 17 72278141 72278141 T C DNAI2 Splice_Site p.X61_splice 0.39 TCGA-AA-A010-01 17 7228226 7228226 G A NEURL4 Missense_Mutation p.R569C 0.33 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 17 72344011 72344011 C T KIF19 Silent p.A340A 0.41 TCGA-AA-A010-01 17 72576145 72576145 G T CD300LD Missense_Mutation p.S194Y 0.41 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 17 72700810 72700810 C T CD300LF Silent p.K63K 0.40 TCGA-AA-A010-01 17 72839572 72839572 C T GRIN2C Missense_Mutation p.D902N 0.40 tolerated(0.32) benign(0.148) TCGA-AA-A010-01 17 72861039 72861039 C T FDXR Silent p.T251T 0.34 TCGA-AA-A010-01 17 7288002 7288002 G A TNK1 Missense_Mutation p.A356T 0.40 deleterious(0.02) possibly_damaging(0.833) TCGA-AA-A010-01 17 72919189 72919189 C T USH1G 5'UTR 0.34 TCGA-AA-A010-01 17 72939390 72939390 C T OTOP3 Missense_Mutation p.L213F 0.34 deleterious(0.02) benign(0.059) TCGA-AA-A010-01 17 72950424 72950424 C T HID1 Missense_Mutation p.R558H 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 17 72968790 72968790 T C HID1 5'UTR 0.28 TCGA-AA-A010-01 17 73488585 73488585 G A KIAA0195 Missense_Mutation p.E543K 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A010-01 17 7349403 7349403 G T CHRNB1 Nonsense_Mutation p.E72* 0.40 TCGA-AA-A010-01 17 73515078 73515078 C A TSEN54 Silent p.V157V 0.36 TCGA-AA-A010-01 17 7360169 7360169 G T CHRNB1 3'UTR 0.33 TCGA-AA-A010-01 17 73661172 73661172 C A RECQL5 Missense_Mutation p.G71C 0.42 deleterious(0.04) probably_damaging(0.977) TCGA-AA-A010-01 17 73753817 73753817 A G ITGB4 3'UTR 0.60 TCGA-AA-A010-01 17 73774518 73774518 C T H3F3B 3'UTR 0.38 TCGA-AA-A010-01 17 73840351 73840351 C T UNC13D Missense_Mutation p.R23H 0.42 deleterious_low_confidence(0.03) benign(0.025) TCGA-AA-A010-01 17 7385420 7385420 C T SLC35G6 Silent p.G39G 0.40 TCGA-AA-A010-01 17 73895042 73895042 G A MRPL38 Silent p.F344F 0.39 TCGA-AA-A010-01 17 73997568 73997568 C T CDK3 Missense_Mutation p.A21V 0.05 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 17 74011650 74011650 G A EVPL Silent p.C590C 0.36 TCGA-AA-A010-01 17 74035901 74035901 G T SRP68 Missense_Mutation p.F590L 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 7416472 7416472 C A POLR2A Missense_Mutation p.S1630Y 0.39 benign(0.337) TCGA-AA-A010-01 17 74625118 74625118 G T ST6GALNAC1 Missense_Mutation p.S269R 0.33 benign(0.1) TCGA-AA-A010-01 17 74673706 74673706 G A MXRA7 Silent p.G193G 0.41 TCGA-AA-A010-01 17 74712702 74712702 G T JMJD6 3'UTR 0.39 TCGA-AA-A010-01 17 74721828 74721828 G T JMJD6 Missense_Mutation p.S80Y 0.39 deleterious(0.02) benign(0.37) TCGA-AA-A010-01 17 74898695 74898695 G A MGAT5B Missense_Mutation p.D141N 0.37 tolerated(0.22) benign(0.053) TCGA-AA-A010-01 17 7530305 7530305 C T SAT2 Missense_Mutation p.R87H 0.43 deleterious(0) probably_damaging(0.974) TCGA-AA-A010-01 17 7533565 7533565 C T SHBG Silent p.R25R 0.33 TCGA-AA-A010-01 17 75398150 75398150 G T SEPT9 Missense_Mutation p.R29I 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A010-01 17 7578407 7578407 G A TP53 Missense_Mutation p.R175C 0.37 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 17 76100704 76100704 C T TNRC6C Silent p.S1653S 0.50 TCGA-AA-A010-01 17 76203156 76203156 G T AFMID 3'UTR 0.37 TCGA-AA-A010-01 17 76219740 76219740 A G AC087645.1 Silent p.F180F 0.42 TCGA-AA-A010-01 17 76423182 76423182 G A DNAH17 Missense_Mutation p.A4222V 0.45 benign(0.033) TCGA-AA-A010-01 17 76451753 76451753 G A DNAH17 Silent p.F3367F 0.28 TCGA-AA-A010-01 17 76554283 76554283 C A DNAH17 Missense_Mutation p.E695D 0.41 benign(0.001) TCGA-AA-A010-01 17 76563175 76563175 A T DNAH17 Missense_Mutation p.L453H 0.27 possibly_damaging(0.887) TCGA-AA-A010-01 17 7667450 7667450 G A DNAH2 Silent p.P1065P 0.36 TCGA-AA-A010-01 17 76794563 76794563 C T USP36 Missense_Mutation p.R1104Q 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 17 7681676 7681676 C T DNAH2 Silent p.T1810T 0.32 TCGA-AA-A010-01 17 7699901 7699901 C T DNAH2 Silent p.T2598T 0.45 TCGA-AA-A010-01 17 77043963 77043963 G T C1QTNF1 Missense_Mutation p.K213N 0.44 tolerated(0.06) possibly_damaging(0.579) TCGA-AA-A010-01 17 7704950 7704950 C A DNAH2 Missense_Mutation p.F2918L 0.44 benign(0.371) TCGA-AA-A010-01 17 7705025 7705025 G T DNAH2 Missense_Mutation p.E2943D 0.41 benign(0.047) TCGA-AA-A010-01 17 7722368 7722368 A G DNAH2 Missense_Mutation p.D3601G 0.33 probably_damaging(0.994) TCGA-AA-A010-01 17 7734740 7734740 G T DNAH2 Missense_Mutation p.K4164N 0.36 probably_damaging(0.924) TCGA-AA-A010-01 17 77768438 77768438 C A CBX8 Missense_Mutation p.R389I 0.39 deleterious(0) benign(0.308) TCGA-AA-A010-01 17 7794343 7794343 A C CHD3 Missense_Mutation p.H216P 0.30 probably_damaging(0.953) TCGA-AA-A010-01 17 78316961 78316961 G A RNF213 Missense_Mutation p.D2007N 0.38 benign(0.053) TCGA-AA-A010-01 17 78319225 78319225 G A RNF213 Missense_Mutation p.D2364N 0.37 benign(0.051) TCGA-AA-A010-01 17 78350139 78350139 G T RNF213 Missense_Mutation p.K4408N 0.34 benign(0.048) TCGA-AA-A010-01 17 78350192 78350192 C A RNF213 Missense_Mutation p.S4426Y 0.39 benign(0.423) TCGA-AA-A010-01 17 79082942 79082942 C A BAIAP2 Intron 0.43 TCGA-AA-A010-01 17 79173533 79173533 G A AZI1 Nonsense_Mutation p.R337* 0.42 TCGA-AA-A010-01 17 79214894 79214894 C T C17orf89 3'UTR 0.40 TCGA-AA-A010-01 17 79226135 79226135 C T SLC38A10 Missense_Mutation p.G602D 0.41 tolerated(0.76) benign(0.004) TCGA-AA-A010-01 17 79532483 79532483 C A NPLOC4 Intron 0.47 TCGA-AA-A010-01 17 79564291 79564291 C T NPLOC4 Missense_Mutation p.V325I 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 79639881 79639881 A G CCDC137 3'UTR 0.35 TCGA-AA-A010-01 17 79652702 79652702 C T HGS Silent p.I35I 0.39 TCGA-AA-A010-01 17 79813420 79813420 C T P4HB Missense_Mutation p.R132H 0.34 deleterious(0) possibly_damaging(0.86) TCGA-AA-A010-01 17 7984344 7984344 G A AC129492.6 3'UTR 0.37 TCGA-AA-A010-01 17 7984779 7984779 T G AC129492.6 3'UTR 0.35 TCGA-AA-A010-01 17 79880350 79880350 C A MAFG 3'UTR 0.36 TCGA-AA-A010-01 17 79985961 79985961 C T LRRC45 Missense_Mutation p.A329V 0.33 tolerated(0.53) benign(0.004) TCGA-AA-A010-01 17 80008372 80008372 A G RFNG Missense_Mutation p.L160P 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 17 80046435 80046435 G A FASN Silent p.I808I 0.39 TCGA-AA-A010-01 17 8011847 8011847 C T ALOXE3 Silent p.S673S 0.46 TCGA-AA-A010-01 17 80202647 80202647 A C CSNK1D 3'UTR 0.38 TCGA-AA-A010-01 17 8021769 8021769 C T ALOXE3 Intron 0.38 TCGA-AA-A010-01 17 80321615 80321615 T C TEX19 3'UTR 0.39 TCGA-AA-A010-01 17 80430462 80430462 G A NARF Silent p.T136T 0.37 TCGA-AA-A010-01 17 8092306 8092306 C A C17orf59 3'UTR 0.42 TCGA-AA-A010-01 17 8110524 8110524 C T AURKB Missense_Mutation p.R123H 0.32 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 17 8222644 8222644 G A ARHGEF15 Missense_Mutation p.R734H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 17 8249012 8249012 A C ODF4 Missense_Mutation p.S206R 0.37 tolerated(0.6) benign(0.008) TCGA-AA-A010-01 17 8272655 8272655 G T KRBA2 Missense_Mutation p.P426T 0.36 tolerated(0.3) benign(0.079) TCGA-AA-A010-01 17 8351924 8351924 G A NDEL1 Missense_Mutation p.R149Q 0.34 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 17 900490 900490 G A TIMM22 Silent p.K36K 0.35 TCGA-AA-A010-01 17 909237 909237 C A ABR 3'UTR 0.32 TCGA-AA-A010-01 17 9124549 9124549 G T NTN1 Missense_Mutation p.K492N 0.36 deleterious(0) probably_damaging(0.975) TCGA-AA-A010-01 17 9683301 9683301 G T DHRS7C Missense_Mutation p.P108T 0.36 tolerated(0.53) benign(0.102) TCGA-AA-A010-01 17 9804430 9804430 G T RCVRN Intron 0.37 TCGA-AA-A010-01 17 9939780 9939780 G A GAS7 Intron 0.29 TCGA-AA-A010-01 18 11853549 11853549 C A CHMP1B 3'UTR 0.38 TCGA-AA-A010-01 18 12125694 12125694 T G ANKRD62 Missense_Mutation p.L625R 0.38 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 18 12358777 12358777 C T AFG3L2 Silent p.K306K 0.38 TCGA-AA-A010-01 18 12449710 12449710 G A SPIRE1 Missense_Mutation p.T733M 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 18 12701088 12701088 C A CEP76 Nonsense_Mutation p.E30* 0.38 TCGA-AA-A010-01 18 12985341 12985341 G A SEH1L Intron 0.42 TCGA-AA-A010-01 18 12986900 12986900 G A SEH1L Silent p.S370S 0.29 TCGA-AA-A010-01 18 13681792 13681792 A C FAM210A Silent p.V95V 0.30 TCGA-AA-A010-01 18 13826667 13826667 G T MC5R Missense_Mutation p.E301D 0.38 deleterious(0) benign(0.25) TCGA-AA-A010-01 18 13885284 13885284 G T MC2R Silent p.I78I 0.46 TCGA-AA-A010-01 18 14105755 14105755 C A ZNF519 Nonsense_Mutation p.E262* 0.32 TCGA-AA-A010-01 18 14183686 14183686 T C ANKRD20A5P RNA 0.24 TCGA-AA-A010-01 18 14533129 14533129 A C POTEC Missense_Mutation p.V329G 0.32 deleterious(0) possibly_damaging(0.642) TCGA-AA-A010-01 18 14791465 14791465 C T ANKRD30B Silent p.F600F 0.34 TCGA-AA-A010-01 18 14799274 14799274 A G ANKRD30B Missense_Mutation p.D704G 0.41 deleterious_low_confidence(0.05) benign(0.001) TCGA-AA-A010-01 18 14852439 14852439 A C ANKRD30B Missense_Mutation p.K1380T 0.49 deleterious(0) benign(0.427) TCGA-AA-A010-01 18 15316618 15316618 T G RNU6-721P 3'Flank 0.44 TCGA-AA-A010-01 18 18539847 18539847 C T ROCK1 Missense_Mutation p.E1156K 0.35 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 18 18547025 18547025 C T ROCK1 Missense_Mutation p.E1069K 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 18 18571178 18571178 T G ROCK1 Missense_Mutation p.K701T 0.35 deleterious(0.01) benign(0.027) TCGA-AA-A010-01 18 19076546 19076546 A G GREB1L Missense_Mutation p.D1093G 0.33 deleterious(0.04) benign(0.281) TCGA-AA-A010-01 18 19102753 19102753 C A GREB1L Missense_Mutation p.L1915I 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 18 19110261 19110261 C T ESCO1 3'UTR 0.31 TCGA-AA-A010-01 18 19444736 19444736 C A MIB1 3'UTR 0.45 TCGA-AA-A010-01 18 20716544 20716544 G T CABLES1 Missense_Mutation p.S273I 0.44 deleterious_low_confidence(0.01) benign(0.107) TCGA-AA-A010-01 18 21112225 21112225 T G NPC1 Missense_Mutation p.S1260R 0.35 tolerated(0.69) benign(0.001) TCGA-AA-A010-01 18 21529849 21529849 G T LAMA3 Missense_Mutation p.G3158C 0.35 probably_damaging(1) TCGA-AA-A010-01 18 21660872 21660872 G A TTC39C Missense_Mutation p.E262K 0.46 tolerated(1) benign(0.362) TCGA-AA-A010-01 18 21736216 21736216 G T CABYR Intron 0.36 TCGA-AA-A010-01 18 21912960 21912960 A C OSBPL1A Missense_Mutation p.C191G 0.42 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 18 21948295 21948295 C A OSBPL1A Missense_Mutation p.A55S 0.24 tolerated(0.1) probably_damaging(0.955) TCGA-AA-A010-01 18 22805939 22805939 C T ZNF521 Missense_Mutation p.S648N 0.32 tolerated(0.41) possibly_damaging(0.464) TCGA-AA-A010-01 18 22806179 22806179 G A ZNF521 Missense_Mutation p.S568L 0.34 deleterious(0.01) benign(0.255) TCGA-AA-A010-01 18 23807085 23807085 G A TAF4B Missense_Mutation p.R63Q 0.40 tolerated(0.18) possibly_damaging(0.467) TCGA-AA-A010-01 18 24496112 24496112 G T CHST9 3'UTR 0.38 TCGA-AA-A010-01 18 25565518 25565518 C A CDH2 Missense_Mutation p.R650I 0.38 deleterious(0.03) possibly_damaging(0.877) TCGA-AA-A010-01 18 25568590 25568590 C A CDH2 Missense_Mutation p.D547Y 0.30 deleterious(0) probably_damaging(0.948) TCGA-AA-A010-01 18 25582974 25582974 C A CDH2 Missense_Mutation p.G336V 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 18 2578011 2578011 C A NDC80 Missense_Mutation p.S116Y 0.38 deleterious(0) probably_damaging(0.925) TCGA-AA-A010-01 18 2688712 2688712 G T SMCHD1 Missense_Mutation p.E280D 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A010-01 18 2729368 2729369 - AA SMCHD1 Frame_Shift_Ins p.D1006Kfs*40 0.29 TCGA-AA-A010-01 18 2743877 2743877 C A SMCHD1 Missense_Mutation p.S1251Y 0.34 deleterious(0) possibly_damaging(0.804) TCGA-AA-A010-01 18 2890629 2890629 G T EMILIN2 Missense_Mutation p.W168C 0.38 tolerated(0.16) benign(0.428) TCGA-AA-A010-01 18 28919975 28919975 C A DSG1 Missense_Mutation p.F558L 0.31 tolerated(0.58) benign(0.168) TCGA-AA-A010-01 18 28926074 28926074 A C DSG1 Missense_Mutation p.E671D 0.34 tolerated(0.45) benign(0.023) TCGA-AA-A010-01 18 28926094 28926094 G T DSG1 Missense_Mutation p.R678I 0.37 deleterious(0) probably_damaging(0.932) TCGA-AA-A010-01 18 28934328 28934328 C T DSG1 Silent p.I723I 0.36 TCGA-AA-A010-01 18 29044209 29044209 G T DSG3 Nonsense_Mutation p.E379* 0.37 TCGA-AA-A010-01 18 29045374 29045374 T G DSG3 Silent p.T455T 0.38 TCGA-AA-A010-01 18 29116266 29116266 G A DSG2 Missense_Mutation p.D509N 0.53 tolerated(0.15) benign(0.015) TCGA-AA-A010-01 18 29126723 29126723 A C DSG2 3'UTR 0.40 TCGA-AA-A010-01 18 29207022 29207022 A C B4GALT6 Missense_Mutation p.I280S 0.37 deleterious(0) possibly_damaging(0.824) TCGA-AA-A010-01 18 2921621 2921621 C A LPIN2 Missense_Mutation p.E784D 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 18 29340634 29340634 G T SLC25A52 Silent p.I7I 0.38 TCGA-AA-A010-01 18 29450466 29450466 C A TRAPPC8 Splice_Site p.X753_splice 0.34 TCGA-AA-A010-01 18 29693800 29693800 C A RNF138 Silent p.I123I 0.29 TCGA-AA-A010-01 18 30092130 30092130 G A WBP11P1 RNA 0.21 TCGA-AA-A010-01 18 3067390 3067390 T C MYOM1 Missense_Mutation p.K1643R 0.41 tolerated(0.15) benign(0.137) TCGA-AA-A010-01 18 30804886 30804886 G T CCDC178 Silent p.S557S 0.37 TCGA-AA-A010-01 18 30825352 30825352 A C CCDC178 Missense_Mutation p.L484V 0.39 deleterious(0.01) probably_damaging(0.947) TCGA-AA-A010-01 18 3084016 3084016 T C MYOM1 Missense_Mutation p.E1450G 0.32 deleterious(0.01) benign(0.002) TCGA-AA-A010-01 18 30950134 30950134 G T CCDC178 Nonsense_Mutation p.Y76* 0.46 TCGA-AA-A010-01 18 31241693 31241693 C A ASXL3 Missense_Mutation p.L157I 0.32 probably_damaging(0.996) TCGA-AA-A010-01 18 31314355 31314355 T C ASXL3 Missense_Mutation p.F353S 0.34 probably_damaging(0.999) TCGA-AA-A010-01 18 31323745 31323745 C A ASXL3 Silent p.G1311G 0.49 TCGA-AA-A010-01 18 31325056 31325056 G A ASXL3 Silent p.P1748P 0.32 TCGA-AA-A010-01 18 3164279 3164279 G A MYOM1 Nonsense_Mutation p.R500* 0.25 TCGA-AA-A010-01 18 32409215 32409215 C A DTNA Intron 0.31 TCGA-AA-A010-01 18 32650251 32650251 C A MAPRE2 Missense_Mutation p.S72Y 0.31 deleterious(0) possibly_damaging(0.597) TCGA-AA-A010-01 18 32677547 32677547 G A MAPRE2 Missense_Mutation p.V130I 0.47 deleterious(0.02) probably_damaging(0.977) TCGA-AA-A010-01 18 32822433 32822433 G A ZNF397 5'UTR 0.31 TCGA-AA-A010-01 18 32833299 32833299 G A ZSCAN30 3'UTR 0.48 TCGA-AA-A010-01 18 32834304 32834304 C A ZSCAN30 Nonsense_Mutation p.E199* 0.41 TCGA-AA-A010-01 18 32887924 32887924 C T ZNF271 RNA 0.40 TCGA-AA-A010-01 18 32917255 32917255 G T ZNF24 Missense_Mutation p.L350I 0.42 deleterious(0.01) possibly_damaging(0.538) TCGA-AA-A010-01 18 32949324 32949324 A G ZNF396 Missense_Mutation p.F288S 0.35 deleterious(0) possibly_damaging(0.82) TCGA-AA-A010-01 18 33048494 33048494 G A INO80C 3'UTR 0.40 TCGA-AA-A010-01 18 33694127 33694127 G A SLC39A6 Silent p.V592V 0.36 TCGA-AA-A010-01 18 33744583 33744583 G A ELP2 Missense_Mutation p.R701Q 0.53 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 18 33775272 33775272 C T MOCOS Silent p.L65L 0.40 TCGA-AA-A010-01 18 34182717 34182717 A C FHOD3 Missense_Mutation p.T267P 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 18 34539376 34539376 C T KIAA1328 Missense_Mutation p.A185V 0.38 deleterious(0) possibly_damaging(0.487) TCGA-AA-A010-01 18 346877 346877 G T COLEC12 Missense_Mutation p.L249I 0.42 tolerated(0.46) possibly_damaging(0.899) TCGA-AA-A010-01 18 348071 348071 T G COLEC12 Missense_Mutation p.K92Q 0.39 deleterious(0.01) benign(0.433) TCGA-AA-A010-01 18 34855139 34855139 G A CELF4 Silent p.F172F 0.32 TCGA-AA-A010-01 18 40850449 40850449 A C SYT4 Missense_Mutation p.S379A 0.29 tolerated(0.09) possibly_damaging(0.523) TCGA-AA-A010-01 18 40854127 40854127 C A SYT4 Missense_Mutation p.K89N 0.30 tolerated(0.19) benign(0.002) TCGA-AA-A010-01 18 40854304 40854304 G T SYT4 Silent p.V30V 0.42 TCGA-AA-A010-01 18 42530439 42530439 A C SETBP1 Missense_Mutation p.Q378H 0.39 tolerated(0.12) benign(0.001) TCGA-AA-A010-01 18 42643265 42643265 G A SETBP1 Missense_Mutation p.D1465N 0.37 deleterious(0.01) possibly_damaging(0.794) TCGA-AA-A010-01 18 42643528 42643528 G T SETBP1 Missense_Mutation p.K1552N 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A010-01 18 43247877 43247877 C T SLC14A2 Silent p.S599S 0.35 TCGA-AA-A010-01 18 43508946 43508946 C A EPG5 Missense_Mutation p.E814D 0.31 tolerated(0.09) probably_damaging(0.953) TCGA-AA-A010-01 18 43519590 43519590 A G EPG5 Missense_Mutation p.V692A 0.37 tolerated(0.1) probably_damaging(0.932) TCGA-AA-A010-01 18 43531190 43531190 C A EPG5 Nonsense_Mutation p.E423* 0.21 TCGA-AA-A010-01 18 43565281 43565281 A C PSTPIP2 3'UTR 0.48 TCGA-AA-A010-01 18 43671724 43671724 C T ATP5A1 Missense_Mutation p.G78D 0.40 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-AA-A010-01 18 44036534 44036534 G A RNF165 Missense_Mutation p.A326T 0.43 tolerated(0.26) possibly_damaging(0.907) TCGA-AA-A010-01 18 44139483 44139483 G A LOXHD1 5'Flank 0.36 TCGA-AA-A010-01 18 44157824 44157824 C T LOXHD1 Missense_Mutation p.E606K 0.41 tolerated(0.71) possibly_damaging(0.81) TCGA-AA-A010-01 18 44559148 44559148 C T TCEB3B 3'UTR 0.30 TCGA-AA-A010-01 18 44559702 44559702 T G TCEB3B Missense_Mutation p.K645T 0.33 deleterious(0) benign(0.038) TCGA-AA-A010-01 18 44561208 44561208 T C TCEB3B Missense_Mutation p.H143R 0.39 tolerated(0.08) benign(0.057) TCGA-AA-A010-01 18 44584699 44584699 G A KATNAL2 Silent p.S70S 0.29 TCGA-AA-A010-01 18 44627365 44627365 G A KATNAL2 Missense_Mutation p.E464K 0.49 tolerated(0.22) benign(0.142) TCGA-AA-A010-01 18 46906063 46906063 C A DYM Nonsense_Mutation p.E87* 0.38 TCGA-AA-A010-01 18 47018050 47018050 T G RPL17 5'UTR 0.43 TCGA-AA-A010-01 18 47753915 47753915 A T CCDC11 Missense_Mutation p.S461T 0.40 deleterious(0.05) benign(0.005) TCGA-AA-A010-01 18 47777933 47777933 A T CCDC11 Missense_Mutation p.L232Q 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A010-01 18 47778090 47778090 G A CCDC11 Missense_Mutation p.R180W 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 18 47800013 47800013 A C MBD1 Missense_Mutation p.L456R 0.38 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-AA-A010-01 18 47800164 47800164 G A MBD1 Nonsense_Mutation p.R406* 0.51 TCGA-AA-A010-01 18 47809282 47809282 C T CXXC1 Missense_Mutation p.R593H 0.37 tolerated(0.12) benign(0.166) TCGA-AA-A010-01 18 48473616 48473616 G T ME2 3'UTR 0.42 TCGA-AA-A010-01 18 48510826 48510826 T G ELAC1 Missense_Mutation p.F173C 0.37 deleterious(0) probably_damaging(0.926) TCGA-AA-A010-01 18 49867093 49867093 T C DCC 5'UTR 0.42 TCGA-AA-A010-01 18 50432440 50432440 G T DCC Nonsense_Mutation p.E147* 0.36 TCGA-AA-A010-01 18 50734116 50734116 G A DCC Missense_Mutation p.R597Q 0.30 deleterious(0.03) probably_damaging(0.959) TCGA-AA-A010-01 18 50923743 50923743 C A DCC Missense_Mutation p.F918L 0.23 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 18 51750400 51750400 A G MBD2 Missense_Mutation p.V177A 0.41 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 18 51820202 51820202 G T POLI Nonsense_Mutation p.E530* 0.39 TCGA-AA-A010-01 18 51820305 51820305 C T POLI Missense_Mutation p.A564V 0.44 deleterious(0.04) benign(0.356) TCGA-AA-A010-01 18 51820532 51820532 G T POLI Nonsense_Mutation p.E640* 0.60 TCGA-AA-A010-01 18 52544934 52544934 A C RAB27B Missense_Mutation p.T40P 0.31 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 18 52551661 52551661 T G RAB27B Missense_Mutation p.W113G 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 18 5291576 5291576 G A ZBTB14 Missense_Mutation p.R211W 0.41 deleterious(0.01) possibly_damaging(0.638) TCGA-AA-A010-01 18 5410588 5410588 C T EPB41L3 Missense_Mutation p.D700N 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-AA-A010-01 18 5416169 5416169 G T EPB41L3 Missense_Mutation p.A572D 0.33 deleterious(0.04) benign(0.323) TCGA-AA-A010-01 18 5416244 5416244 G T EPB41L3 Missense_Mutation p.A547D 0.39 tolerated(0.15) benign(0.001) TCGA-AA-A010-01 18 54339845 54339845 G A WDR7 Silent p.T33T 0.29 TCGA-AA-A010-01 18 54350048 54350048 A C WDR7 Missense_Mutation p.S162R 0.39 deleterious(0.02) probably_damaging(0.972) TCGA-AA-A010-01 18 54385252 54385252 A C WDR7 Missense_Mutation p.S546R 0.38 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 18 55322646 55322646 G A ATP8B1 Missense_Mutation p.A904V 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 18 55816775 55816775 G A NEDD4L Intron 0.39 TCGA-AA-A010-01 18 55997991 55997991 G A NEDD4L Missense_Mutation p.E279K 0.38 deleterious(0.05) benign(0.047) TCGA-AA-A010-01 18 56202377 56202377 G A ALPK2 Missense_Mutation p.A1681V 0.38 tolerated(0.33) benign(0) TCGA-AA-A010-01 18 56247690 56247690 G A ALPK2 Silent p.C106C 0.40 TCGA-AA-A010-01 18 56348532 56348532 G T MALT1 Nonsense_Mutation p.E114* 0.40 TCGA-AA-A010-01 18 56376623 56376623 C T MALT1 Silent p.G221G 0.36 TCGA-AA-A010-01 18 56822990 56822990 G T SEC11C Nonsense_Mutation p.E140* 0.30 TCGA-AA-A010-01 18 56825923 56825923 G T SEC11C 3'UTR 0.37 TCGA-AA-A010-01 18 56964052 56964052 C A CPLX4 Missense_Mutation p.D121Y 0.41 deleterious(0.01) possibly_damaging(0.879) TCGA-AA-A010-01 18 58038764 58038764 C A MC4R Missense_Mutation p.Q273H 0.31 tolerated(0.19) benign(0.001) TCGA-AA-A010-01 18 58039161 58039161 A T MC4R Missense_Mutation p.L141H 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 18 58039793 58039793 C T MC4R 5'UTR 0.37 TCGA-AA-A010-01 18 5890223 5890223 C A TMEM200C Nonsense_Mutation p.E614* 0.39 TCGA-AA-A010-01 18 59217463 59217463 G A CDH20 Splice_Site p.X634_splice 0.35 TCGA-AA-A010-01 18 59221666 59221666 C T CDH20 Missense_Mutation p.T715M 0.24 tolerated(0.23) possibly_damaging(0.541) TCGA-AA-A010-01 18 60191545 60191545 G T ZCCHC2 Missense_Mutation p.E296D 0.31 tolerated(0.19) benign(0.107) TCGA-AA-A010-01 18 60242299 60242299 G A ZCCHC2 Silent p.T995T 0.36 TCGA-AA-A010-01 18 60986020 60986020 C A BCL2 5'UTR 0.32 TCGA-AA-A010-01 18 60986351 60986351 C A BCL2 5'UTR 0.27 TCGA-AA-A010-01 18 61160357 61160357 G T SERPINB5 Intron 0.32 TCGA-AA-A010-01 18 61310728 61310728 G T SERPINB4 Missense_Mutation p.F28L 0.32 tolerated(0.13) probably_damaging(0.996) TCGA-AA-A010-01 18 61387252 61387252 G T SERPINB11 Missense_Mutation p.V161F 0.43 deleterious(0) possibly_damaging(0.517) TCGA-AA-A010-01 18 61471708 61471708 G T SERPINB7 Nonsense_Mutation p.E328* 0.29 TCGA-AA-A010-01 18 61565055 61565055 C T SERPINB2 Missense_Mutation p.S171F 0.38 deleterious(0.02) benign(0.29) TCGA-AA-A010-01 18 61570494 61570494 G A SERPINB2 Silent p.K401K 0.43 TCGA-AA-A010-01 18 61597399 61597399 A G SERPINB10 Missense_Mutation p.E204G 0.35 tolerated(0.11) probably_damaging(0.971) TCGA-AA-A010-01 18 61627508 61627508 A C HMSD Missense_Mutation p.K113N 0.36 deleterious(0.02) benign(0.038) TCGA-AA-A010-01 18 61654267 61654267 G A SERPINB8 Missense_Mutation p.E294K 0.37 tolerated(0.41) benign(0.052) TCGA-AA-A010-01 18 618037 618037 C T CLUL1 Silent p.L13L 0.46 TCGA-AA-A010-01 18 64172027 64172027 A C CDH19 3'UTR 0.50 TCGA-AA-A010-01 18 64211241 64211241 G A CDH19 Missense_Mutation p.A394V 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 18 65179562 65179562 C A DSEL Missense_Mutation p.D772Y 0.42 deleterious(0.01) benign(0.188) TCGA-AA-A010-01 18 65179606 65179606 C T DSEL Missense_Mutation p.R757Q 0.30 tolerated(0.3) benign(0.329) TCGA-AA-A010-01 18 65179949 65179949 T C DSEL Missense_Mutation p.K643E 0.38 deleterious(0.05) benign(0.026) TCGA-AA-A010-01 18 65180024 65180024 C A DSEL Missense_Mutation p.D618Y 0.27 deleterious(0.02) probably_damaging(0.989) TCGA-AA-A010-01 18 65180056 65180056 G T DSEL Missense_Mutation p.S607Y 0.32 tolerated(0.9) benign(0.311) TCGA-AA-A010-01 18 65180135 65180135 G A DSEL Missense_Mutation p.R581C 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 18 65180137 65180137 T C DSEL Missense_Mutation p.Y580C 0.42 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 18 65180851 65180851 G T DSEL Missense_Mutation p.S342Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 18 66504514 66504514 G T CCDC102B Missense_Mutation p.D172Y 0.36 deleterious(0) possibly_damaging(0.718) TCGA-AA-A010-01 18 67365728 67365728 C A DOK6 Silent p.L166L 0.44 TCGA-AA-A010-01 18 67671443 67671443 T G RTTN Missense_Mutation p.N2209H 0.44 tolerated(0.3) benign(0.01) TCGA-AA-A010-01 18 67996715 67996715 C A SOCS6 3'UTR 0.24 TCGA-AA-A010-01 18 67997031 67997031 C A SOCS6 3'UTR 0.35 TCGA-AA-A010-01 18 6876132 6876132 T G ARHGAP28 Missense_Mutation p.F246L 0.36 tolerated(1) benign(0.035) TCGA-AA-A010-01 18 6949109 6949109 T G LAMA1 Missense_Mutation p.K2849N 0.27 tolerated(0.59) benign(0.001) TCGA-AA-A010-01 18 6950820 6950820 G T LAMA1 Silent p.V2786V 0.29 TCGA-AA-A010-01 18 6978322 6978322 G A LAMA1 Silent p.S2021S 0.37 TCGA-AA-A010-01 18 6982583 6982583 C A LAMA1 Nonsense_Mutation p.E1935* 0.40 TCGA-AA-A010-01 18 70450978 70450978 C T NETO1 Missense_Mutation p.R268H 0.48 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 18 70502450 70502450 T C NETO1 Intron 0.64 TCGA-AA-A010-01 18 71790600 71790600 C A FBXO15 Intron 0.45 TCGA-AA-A010-01 18 71959063 71959063 C A CYB5A Missense_Mutation p.E16D 0.36 tolerated(0.06) benign(0.347) TCGA-AA-A010-01 18 72226584 72226584 G T CNDP1 Missense_Mutation p.E60D 0.39 deleterious(0.02) benign(0.091) TCGA-AA-A010-01 18 72245509 72245509 A C CNDP1 Missense_Mutation p.K372Q 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 18 7231664 7231664 G A LRRC30 Silent p.A176A 0.38 TCGA-AA-A010-01 18 72913496 72913496 G T ZADH2 Missense_Mutation p.L337M 0.40 tolerated(0.27) benign(0.001) TCGA-AA-A010-01 18 72998236 72998236 C T TSHZ1 Missense_Mutation p.R247C 0.45 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 18 72998237 72998237 G A TSHZ1 Missense_Mutation p.R247H 0.33 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 18 74074440 74074440 C T ZNF516 3'UTR 0.27 TCGA-AA-A010-01 18 74153398 74153398 C T ZNF516 Missense_Mutation p.R538H 0.32 deleterious(0) benign(0.035) TCGA-AA-A010-01 18 74700831 74700831 A G RP11-862L9.3 3'Flank 0.48 TCGA-AA-A010-01 18 76754169 76754169 C T SALL3 Silent p.F726F 0.33 TCGA-AA-A010-01 18 76757082 76757082 C T SALL3 Silent p.N1221N 0.32 TCGA-AA-A010-01 18 77211032 77211032 G T NFATC1 Missense_Mutation p.K543N 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 18 77733841 77733841 C A TXNL4A Missense_Mutation p.M91I 0.40 deleterious(0.01) benign(0.191) TCGA-AA-A010-01 18 77894214 77894214 A T ADNP2 Silent p.G306G 0.41 TCGA-AA-A010-01 18 77926773 77926773 G T AC139100.2 Missense_Mutation p.D86Y 0.33 probably_damaging(0.937) TCGA-AA-A010-01 18 77927061 77927061 G A AC139100.2 3'UTR 0.55 TCGA-AA-A010-01 18 7888178 7888178 G T PTPRM Nonsense_Mutation p.E91* 0.41 TCGA-AA-A010-01 18 8085801 8085801 A G PTPRM Missense_Mutation p.T562A 0.29 deleterious(0.01) possibly_damaging(0.737) TCGA-AA-A010-01 18 8113519 8113519 G A PTPRM Missense_Mutation p.R631Q 0.24 tolerated(0.57) benign(0.019) TCGA-AA-A010-01 18 8113550 8113550 G T PTPRM Missense_Mutation p.K641N 0.26 tolerated(0.07) benign(0.098) TCGA-AA-A010-01 18 8296396 8296396 G A PTPRM Missense_Mutation p.D929N 0.37 deleterious(0) benign(0.39) TCGA-AA-A010-01 18 8380349 8380349 T C PTPRM Missense_Mutation p.V1281A 0.39 deleterious(0.03) possibly_damaging(0.644) TCGA-AA-A010-01 18 8406263 8406263 G T PTPRM 3'UTR 0.52 TCGA-AA-A010-01 18 8720369 8720369 G A SOGA2 Missense_Mutation p.E78K 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 18 8784266 8784266 G A SOGA2 Missense_Mutation p.D386N 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 18 8784467 8784467 T C SOGA2 Missense_Mutation p.Y453H 0.39 tolerated(0.58) benign(0) TCGA-AA-A010-01 18 8825106 8825106 C T SOGA2 Missense_Mutation p.R1200C 0.31 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 18 8831742 8831742 G A SOGA2 3'UTR 0.35 TCGA-AA-A010-01 18 905390 905390 G T ADCYAP1 Translation_Start_Site p.M1? 0.39 deleterious(0.01) benign(0.139) TCGA-AA-A010-01 18 9254528 9254528 C A ANKRD12 Silent p.V421V 0.34 TCGA-AA-A010-01 18 9257181 9257181 G T ANKRD12 Nonsense_Mutation p.E1306* 0.40 TCGA-AA-A010-01 18 9396361 9396361 C A TWSG1 Missense_Mutation p.L103I 0.45 deleterious(0) probably_damaging(0.974) TCGA-AA-A010-01 18 9577098 9577098 T G PPP4R1 Missense_Mutation p.K337T 0.45 tolerated(1) benign(0.003) TCGA-AA-A010-01 18 9588179 9588179 C T PPP4R1 Missense_Mutation p.E165K 0.29 tolerated(0.35) possibly_damaging(0.682) TCGA-AA-A010-01 18 9814084 9814084 A C RAB31 Missense_Mutation p.K90T 0.25 tolerated(0.11) possibly_damaging(0.502) TCGA-AA-A010-01 18 9886134 9886134 T C TXNDC2 5'UTR 0.41 TCGA-AA-A010-01 19 10169257 10169257 G A C3P1 RNA 0.31 TCGA-AA-A010-01 19 10226046 10226046 C T P2RY11 3'UTR 0.50 TCGA-AA-A010-01 19 10250770 10250770 G A DNMT1 Missense_Mutation p.S1253L 0.37 deleterious(0.03) possibly_damaging(0.479) TCGA-AA-A010-01 19 1058663 1058663 G T ABCA7 Missense_Mutation p.K1732N 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 19 10624575 10624575 G A S1PR5 Silent p.D371D 0.44 TCGA-AA-A010-01 19 10781702 10781702 C A ILF3 Missense_Mutation p.S19Y 0.43 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 19 10912967 10912967 C A DNM2 Missense_Mutation p.L476I 0.40 tolerated(0.23) benign(0.098) TCGA-AA-A010-01 19 1106418 1106418 G A GPX4 Missense_Mutation p.G174D 0.38 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 19 11094827 11094827 G T SMARCA4 5'UTR 0.36 TCGA-AA-A010-01 19 11100016 11100016 G A SMARCA4 Missense_Mutation p.R381Q 0.40 probably_damaging(0.997) TCGA-AA-A010-01 19 11312689 11312689 G T DOCK6 Missense_Mutation p.P1855Q 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 11464144 11464144 G A CCDC159 Silent p.K195K 0.36 TCGA-AA-A010-01 19 11533403 11533403 C A CCDC151 Missense_Mutation p.D415Y 0.37 deleterious(0.01) possibly_damaging(0.5) TCGA-AA-A010-01 19 11541756 11541756 G T CCDC151 Missense_Mutation p.T110N 0.35 tolerated(0.68) benign(0.005) TCGA-AA-A010-01 19 11660622 11660622 C A CNN1 3'UTR 0.43 TCGA-AA-A010-01 19 11796230 11796230 G T ZNF833P RNA 0.40 TCGA-AA-A010-01 19 11891817 11891817 A C ZNF441 Missense_Mutation p.K393T 0.44 deleterious(0.03) possibly_damaging(0.605) TCGA-AA-A010-01 19 11917053 11917053 G A ZNF491 Silent p.R95R 0.38 TCGA-AA-A010-01 19 11917722 11917722 A C ZNF491 Missense_Mutation p.E318D 0.43 deleterious(0.02) possibly_damaging(0.724) TCGA-AA-A010-01 19 11943731 11943731 G T ZNF440 Silent p.S580S 0.39 TCGA-AA-A010-01 19 11978601 11978601 G T ZNF439 Missense_Mutation p.E239D 0.38 deleterious(0.03) probably_damaging(0.986) TCGA-AA-A010-01 19 11978669 11978669 G T ZNF439 Missense_Mutation p.R262I 0.30 tolerated(0.06) probably_damaging(0.963) TCGA-AA-A010-01 19 11979154 11979154 A C ZNF439 Missense_Mutation p.N424H 0.36 tolerated(0.4) benign(0.002) TCGA-AA-A010-01 19 12059282 12059282 A G ZNF700 Missense_Mutation p.D148G 0.38 tolerated(0.19) possibly_damaging(0.581) TCGA-AA-A010-01 19 12059434 12059434 T G ZNF700 Missense_Mutation p.C199G 0.43 deleterious(0.03) probably_damaging(0.966) TCGA-AA-A010-01 19 12059804 12059804 G A ZNF700 Missense_Mutation p.R322H 0.47 tolerated(0.05) benign(0.061) TCGA-AA-A010-01 19 12060566 12060566 C T ZNF700 Missense_Mutation p.A576V 0.45 tolerated(0.51) benign(0.206) TCGA-AA-A010-01 19 12090048 12090048 C A ZNF763 3'UTR 0.40 TCGA-AA-A010-01 19 12187132 12187132 G A ZNF844 Silent p.K399K 0.35 TCGA-AA-A010-01 19 12187241 12187241 G A ZNF844 Missense_Mutation p.D436N 0.31 tolerated(0.33) benign(0.326) TCGA-AA-A010-01 19 12188003 12188003 G T ZNF844 3'UTR 0.38 TCGA-AA-A010-01 19 12257020 12257020 G T ZNF625 Missense_Mutation p.L71I 0.36 tolerated(0.05) probably_damaging(0.953) TCGA-AA-A010-01 19 12501457 12501457 C A ZNF799 Missense_Mutation p.E585D 0.37 tolerated(0.06) possibly_damaging(0.619) TCGA-AA-A010-01 19 12502322 12502322 C T ZNF799 Missense_Mutation p.R297Q 0.40 tolerated(0.52) benign(0.015) TCGA-AA-A010-01 19 12542084 12542084 C A ZNF443 Missense_Mutation p.R301I 0.41 deleterious(0.01) probably_damaging(0.959) TCGA-AA-A010-01 19 12542152 12542152 C A ZNF443 Missense_Mutation p.E278D 0.36 tolerated(0.09) benign(0.093) TCGA-AA-A010-01 19 12575345 12575345 C A ZNF709 Missense_Mutation p.R464L 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 19 12575753 12575753 C A ZNF709 Missense_Mutation p.R328I 0.37 tolerated(0.05) possibly_damaging(0.645) TCGA-AA-A010-01 19 12595504 12595504 T G ZNF709 5'UTR 0.36 TCGA-AA-A010-01 19 12637516 12637516 C A ZNF564 Missense_Mutation p.R469I 0.27 deleterious(0.03) possibly_damaging(0.856) TCGA-AA-A010-01 19 12637939 12637939 T C ZNF564 Missense_Mutation p.E328G 0.41 tolerated(0.05) probably_damaging(0.969) TCGA-AA-A010-01 19 12638272 12638272 C A ZNF564 Missense_Mutation p.R217I 0.32 tolerated(0.15) possibly_damaging(0.856) TCGA-AA-A010-01 19 12691324 12691324 C A ZNF490 Missense_Mutation p.R522M 0.34 deleterious(0.02) possibly_damaging(0.749) TCGA-AA-A010-01 19 12775720 12775720 C A MAN2B1 Missense_Mutation p.M172I 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A010-01 19 12807129 12807129 C A FBXW9 Missense_Mutation p.E89D 0.45 deleterious(0.02) benign(0.297) TCGA-AA-A010-01 19 12865403 12865403 C T BEST2 Silent p.S95S 0.35 TCGA-AA-A010-01 19 12883482 12883482 C A HOOK2 Missense_Mutation p.R134I 0.41 tolerated(0.26) benign(0.065) TCGA-AA-A010-01 19 12958856 12958856 G T MAST1 Missense_Mutation p.E253D 0.34 tolerated(0.16) possibly_damaging(0.705) TCGA-AA-A010-01 19 13015377 13015377 C T SYCE2 Missense_Mutation p.E79K 0.35 tolerated(0.08) benign(0.345) TCGA-AA-A010-01 19 13050049 13050049 G T CALR Missense_Mutation p.G65C 0.37 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 19 13414397 13414397 G T CACNA1A Missense_Mutation p.A712D 0.39 probably_damaging(0.991) TCGA-AA-A010-01 19 1360462 1360462 G A MUM1 Missense_Mutation p.R182K 0.37 tolerated(0.86) possibly_damaging(0.636) TCGA-AA-A010-01 19 13941063 13941063 G T ZSWIM4 Missense_Mutation p.E723D 0.26 deleterious(0) unknown(0) TCGA-AA-A010-01 19 14049193 14049193 G A PODNL1 5'UTR 0.37 TCGA-AA-A010-01 19 14507207 14507207 G A CD97 Missense_Mutation p.V134I 0.29 tolerated(0.71) benign(0.001) TCGA-AA-A010-01 19 14574934 14574934 C T PKN1 Missense_Mutation p.S573L 0.40 tolerated(0.29) benign(0) TCGA-AA-A010-01 19 1465762 1465762 C A APC2 Missense_Mutation p.P821H 0.41 possibly_damaging(0.765) TCGA-AA-A010-01 19 1468910 1468910 G T APC2 Missense_Mutation p.K1870N 0.79 probably_damaging(0.988) TCGA-AA-A010-01 19 14749127 14749127 G A EMR3 Missense_Mutation p.A425V 0.40 tolerated(0.21) benign(0.099) TCGA-AA-A010-01 19 14765792 14765792 A C EMR3 Splice_Site p.X193_splice 0.35 TCGA-AA-A010-01 19 14765878 14765878 G T EMR3 Missense_Mutation p.L165I 0.39 tolerated(0.1) possibly_damaging(0.526) TCGA-AA-A010-01 19 14772866 14772866 G A EMR3 Silent p.V88V 0.38 TCGA-AA-A010-01 19 14829331 14829331 G T ZNF333 Nonsense_Mutation p.E398* 0.32 TCGA-AA-A010-01 19 14910661 14910661 G A OR7C1 Silent p.G96G 0.35 TCGA-AA-A010-01 19 14952379 14952379 A - OR7A10 Frame_Shift_Del p.F104Sfs*5 0.28 TCGA-AA-A010-01 19 15052758 15052758 T C OR7C2 Missense_Mutation p.V153A 0.45 tolerated_low_confidence(0.32) benign(0.262) TCGA-AA-A010-01 19 15052825 15052825 G A OR7C2 Silent p.P175P 0.34 TCGA-AA-A010-01 19 1506794 1506794 G T ADAMTSL5 Missense_Mutation p.P329H 0.36 deleterious(0.03) benign(0.013) TCGA-AA-A010-01 19 15223231 15223231 G T SYDE1 Missense_Mutation p.Q551H 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 15224460 15224460 G A SYDE1 Missense_Mutation p.E632K 0.37 tolerated(0.08) benign(0.04) TCGA-AA-A010-01 19 15272374 15272374 C T NOTCH3 Missense_Mutation p.R2022H 0.40 deleterious(0.02) possibly_damaging(0.697) TCGA-AA-A010-01 19 15295104 15295104 A C NOTCH3 Splice_Site p.X856_splice 0.40 TCGA-AA-A010-01 19 15567424 15567424 C T RASAL3 Missense_Mutation p.A489T 0.37 tolerated(0.18) possibly_damaging(0.529) TCGA-AA-A010-01 19 15651471 15651471 G A CYP4F22 Nonsense_Mutation p.W294* 0.40 TCGA-AA-A010-01 19 15730531 15730531 C T CYP4F8 RNA 0.31 TCGA-AA-A010-01 19 15739620 15739620 C A CYP4F8 RNA 0.41 TCGA-AA-A010-01 19 15918780 15918780 A T OR10H1 Missense_Mutation p.L23H 0.36 tolerated(0.36) probably_damaging(0.928) TCGA-AA-A010-01 19 15989717 15989717 G A CYP4F2 Missense_Mutation p.A476V 0.30 tolerated(0.07) benign(0.022) TCGA-AA-A010-01 19 16006435 16006435 C A CYP4F2 Missense_Mutation p.R75I 0.38 tolerated(0.18) benign(0.003) TCGA-AA-A010-01 19 16060354 16060354 C A OR10H4 Missense_Mutation p.F179L 0.31 tolerated(0.09) benign(0.001) TCGA-AA-A010-01 19 1615560 1615560 G T TCF3 Intron 0.43 TCGA-AA-A010-01 19 16601306 16601306 G A CALR3 Missense_Mutation p.T90I 0.39 deleterious(0.02) probably_damaging(0.972) TCGA-AA-A010-01 19 16646266 16646266 T C CHERP Silent p.R127R 0.33 TCGA-AA-A010-01 19 16860402 16860402 G A NWD1 Missense_Mutation p.E317K 0.32 tolerated(0.14) benign(0.363) TCGA-AA-A010-01 19 16926194 16926194 C A NWD1 3'UTR 0.40 TCGA-AA-A010-01 19 16963895 16963895 C T SIN3B Missense_Mutation p.R289C 0.49 tolerated(0.08) benign(0.023) TCGA-AA-A010-01 19 16974595 16974595 C T SIN3B Silent p.D489D 0.37 TCGA-AA-A010-01 19 17000947 17000947 C T F2RL3 Missense_Mutation p.R225C 0.35 tolerated(0.18) possibly_damaging(0.849) TCGA-AA-A010-01 19 17032770 17032770 G T CPAMD8 Missense_Mutation p.R1239S 0.27 deleterious(0.01) possibly_damaging(0.533) TCGA-AA-A010-01 19 17038885 17038885 C G CPAMD8 Missense_Mutation p.A1149P 0.38 deleterious(0.02) probably_damaging(0.994) TCGA-AA-A010-01 19 17113097 17113097 T C CPAMD8 Missense_Mutation p.E293G 0.37 deleterious(0.03) possibly_damaging(0.882) TCGA-AA-A010-01 19 17264832 17264832 G T MYO9B Nonsense_Mutation p.E352* 0.37 TCGA-AA-A010-01 19 17337943 17337943 G T OCEL1 Missense_Mutation p.K129N 0.40 deleterious(0.03) benign(0.01) TCGA-AA-A010-01 19 17362408 17362408 A C USHBP1 Missense_Mutation p.D635E 0.35 tolerated(0.33) benign(0.044) TCGA-AA-A010-01 19 17373556 17373556 G A USHBP1 Silent p.F149F 0.45 TCGA-AA-A010-01 19 17375148 17375148 C T USHBP1 5'UTR 0.26 TCGA-AA-A010-01 19 17452604 17452604 G A GTPBP3 3'UTR 0.29 TCGA-AA-A010-01 19 17743591 17743591 G A UNC13A Missense_Mutation p.A1143V 0.44 tolerated(0.07) benign(0.107) TCGA-AA-A010-01 19 17752275 17752275 C T UNC13A Missense_Mutation p.D855N 0.39 tolerated(0.08) benign(0.372) TCGA-AA-A010-01 19 17785522 17785522 C T UNC13A Silent p.K32K 0.45 TCGA-AA-A010-01 19 1783240 1783240 C A ATP8B3 Missense_Mutation p.E1230D 0.32 tolerated(0.13) benign(0.4) TCGA-AA-A010-01 19 17837207 17837207 C A MAP1S Missense_Mutation p.F338L 0.56 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 19 17877511 17877511 C A FCHO1 Silent p.V76V 0.32 TCGA-AA-A010-01 19 17922427 17922427 C T B3GNT3 Silent p.F205F 0.36 TCGA-AA-A010-01 19 17927789 17927789 G A INSL3 Missense_Mutation p.A122V 0.40 tolerated_low_confidence(0.36) benign(0.212) TCGA-AA-A010-01 19 17953844 17953844 C T JAK3 Silent p.K186K 0.35 TCGA-AA-A010-01 19 18119179 18119179 C T ARRDC2 Silent p.V20V 0.33 TCGA-AA-A010-01 19 18180498 18180498 G A IL12RB1 Silent p.V349V 0.37 TCGA-AA-A010-01 19 18375950 18375950 C A KIAA1683 Missense_Mutation p.E800D 0.30 tolerated(0.57) benign(0.072) TCGA-AA-A010-01 19 18380324 18380324 C A KIAA1683 5'UTR 0.39 TCGA-AA-A010-01 19 18497154 18497154 G T GDF15 Missense_Mutation p.R52I 0.27 deleterious(0.01) benign(0.31) TCGA-AA-A010-01 19 18893963 18893963 T C COMP Missense_Mutation p.N710D 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-AA-A010-01 19 18965416 18965416 G A UPF1 Missense_Mutation p.G388D 0.46 tolerated(0.07) benign(0.04) TCGA-AA-A010-01 19 18974259 18974259 C A UPF1 Silent p.I871I 0.38 TCGA-AA-A010-01 19 19042425 19042425 G A HOMER3 Silent p.L234L 0.47 TCGA-AA-A010-01 19 19043848 19043848 G T HOMER3 Missense_Mutation p.P140T 0.55 tolerated(0.06) probably_damaging(0.998) TCGA-AA-A010-01 19 19141867 19141867 C T SUGP2 Missense_Mutation p.R5Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 19 19257942 19257942 C T MEF2B Silent p.P148P 0.35 TCGA-AA-A010-01 19 19612066 19612066 G A GATAD2A Silent p.K447K 0.35 TCGA-AA-A010-01 19 19638990 19638990 A C NDUFA13 3'UTR 0.27 TCGA-AA-A010-01 19 19646456 19646456 C T YJEFN3 Missense_Mutation p.S221F 0.31 deleterious(0) probably_damaging(0.925) TCGA-AA-A010-01 19 19756197 19756197 G A ATP13A1 3'UTR 0.38 TCGA-AA-A010-01 19 19790703 19790703 G T ZNF101 Missense_Mutation p.R302I 0.52 tolerated(0.1) benign(0.363) TCGA-AA-A010-01 19 19823039 19823039 G A ZNF14 Nonsense_Mutation p.R351* 0.39 TCGA-AA-A010-01 19 19905835 19905835 A G ZNF506 Silent p.C287C 0.34 TCGA-AA-A010-01 19 19906097 19906097 C T ZNF506 Missense_Mutation p.R200H 0.42 tolerated(0.12) possibly_damaging(0.54) TCGA-AA-A010-01 19 19989320 19989320 G T ZNF253 Nonsense_Mutation p.E12* 0.42 TCGA-AA-A010-01 19 20117756 20117756 G A ZNF682 Silent p.H185H 0.41 TCGA-AA-A010-01 19 20216080 20216080 A C ZNF90 Missense_Mutation p.K61Q 0.40 deleterious(0.02) possibly_damaging(0.878) TCGA-AA-A010-01 19 20228862 20228862 G T ZNF90 Missense_Mutation p.D167Y 0.32 tolerated(0.07) benign(0.058) TCGA-AA-A010-01 19 20229026 20229026 A C ZNF90 Missense_Mutation p.R221S 0.50 tolerated(0.39) benign(0.035) TCGA-AA-A010-01 19 20229628 20229628 A G ZNF90 Missense_Mutation p.E422G 0.55 deleterious(0.02) benign(0.115) TCGA-AA-A010-01 19 20230164 20230164 C A ZNF90 Missense_Mutation p.L601I 0.39 tolerated_low_confidence(0.32) benign(0.085) TCGA-AA-A010-01 19 21131985 21131985 G T ZNF85 Missense_Mutation p.R222I 0.35 tolerated(0.36) benign(0.288) TCGA-AA-A010-01 19 21132799 21132799 G A ZNF85 Nonsense_Mutation p.W493* 0.30 TCGA-AA-A010-01 19 21239872 21239872 G T ZNF430 Missense_Mutation p.R253I 0.35 tolerated(0.39) benign(0.057) TCGA-AA-A010-01 19 21240510 21240510 T C ZNF430 Missense_Mutation p.F466L 0.36 deleterious(0.02) probably_damaging(0.984) TCGA-AA-A010-01 19 21301036 21301036 C T ZNF714 Silent p.I522I 0.59 TCGA-AA-A010-01 19 21366736 21366736 G T ZNF431 Nonsense_Mutation p.E544* 0.45 TCGA-AA-A010-01 19 21475898 21475898 T G ZNF708 3'UTR 0.44 TCGA-AA-A010-01 19 21476131 21476131 T C ZNF708 Missense_Mutation p.N546S 0.21 tolerated(0.87) benign(0.001) TCGA-AA-A010-01 19 21476269 21476269 C T ZNF708 Missense_Mutation p.G500E 0.38 tolerated(0.08) possibly_damaging(0.512) TCGA-AA-A010-01 19 21606166 21606166 G A ZNF493 Silent p.E235E 0.35 TCGA-AA-A010-01 19 21606169 21606169 A C ZNF493 Missense_Mutation p.K236N 0.35 tolerated(0.05) probably_damaging(0.999) TCGA-AA-A010-01 19 21607876 21607876 A C ZNF493 3'UTR 0.36 TCGA-AA-A010-01 19 21609082 21609082 A G ZNF493 3'UTR 0.54 TCGA-AA-A010-01 19 21609764 21609764 A T ZNF493 3'UTR 0.44 TCGA-AA-A010-01 19 21720170 21720170 A G ZNF429 Missense_Mutation p.T439A 0.41 tolerated(0.78) benign(0.004) TCGA-AA-A010-01 19 21934122 21934122 G T ZNF100 Intron 0.35 TCGA-AA-A010-01 19 21950272 21950272 C A ZNF100 5'UTR 0.38 TCGA-AA-A010-01 19 21990395 21990395 C A ZNF43 3'UTR 0.33 TCGA-AA-A010-01 19 21991493 21991493 G T ZNF43 Missense_Mutation p.T449N 0.33 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 19 21991702 21991702 A G ZNF43 Silent p.F379F 0.41 TCGA-AA-A010-01 19 21992504 21992504 A G ZNF43 Missense_Mutation p.V112A 0.23 deleterious(0.03) benign(0.027) TCGA-AA-A010-01 19 22018906 22018906 C G ZNF43 5'UTR 0.47 TCGA-AA-A010-01 19 2214443 2214443 G A DOT1L Intron 0.43 TCGA-AA-A010-01 19 22156015 22156015 T A ZNF208 Missense_Mutation p.K607N 0.42 deleterious(0.02) probably_damaging(0.913) TCGA-AA-A010-01 19 2216761 2216761 C T DOT1L Missense_Mutation p.S802L 0.26 tolerated_low_confidence(0.19) benign(0.001) TCGA-AA-A010-01 19 22271550 22271550 G A ZNF257 Missense_Mutation p.R333Q 0.38 tolerated(0.21) benign(0.013) TCGA-AA-A010-01 19 22271817 22271817 A C ZNF257 Missense_Mutation p.K422T 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 19 22272165 22272165 C T ZNF257 Missense_Mutation p.A538V 0.31 deleterious(0.02) benign(0.002) TCGA-AA-A010-01 19 22272278 22272278 C T ZNF257 3'UTR 0.39 TCGA-AA-A010-01 19 22375866 22375866 T G ZNF676 Missense_Mutation p.K28Q 0.47 deleterious(0.05) possibly_damaging(0.456) TCGA-AA-A010-01 19 22574507 22574507 C A ZNF98 Missense_Mutation p.M510I 0.35 tolerated(0.45) benign(0) TCGA-AA-A010-01 19 22574844 22574844 C A ZNF98 Missense_Mutation p.R398I 0.50 tolerated(0.38) benign(0.001) TCGA-AA-A010-01 19 22575348 22575348 C A ZNF98 Missense_Mutation p.R230I 0.35 tolerated(0.35) benign(0.248) TCGA-AA-A010-01 19 22575728 22575728 A C ZNF98 Nonsense_Mutation p.Y103* 0.35 TCGA-AA-A010-01 19 22780092 22780092 G A RN7SL860P 5'Flank 0.42 TCGA-AA-A010-01 19 22780123 22780123 C A RN7SL860P 5'Flank 0.40 TCGA-AA-A010-01 19 22786251 22786251 A G AC011467.1 3'Flank 0.47 TCGA-AA-A010-01 19 22847541 22847541 G T ZNF492 Missense_Mutation p.R357I 0.30 tolerated(0.41) benign(0.011) TCGA-AA-A010-01 19 22940109 22940109 G A ZNF99 3'Flank 0.45 TCGA-AA-A010-01 19 22940791 22940791 C A ZNF99 Missense_Mutation p.E640D 0.19 deleterious(0.03) benign(0.431) TCGA-AA-A010-01 19 22941402 22941402 A C ZNF99 Missense_Mutation p.F437V 0.39 tolerated(0.49) benign(0.051) TCGA-AA-A010-01 19 22941594 22941594 C A ZNF99 Nonsense_Mutation p.E373* 0.33 TCGA-AA-A010-01 19 22942314 22942314 G T ZNF99 Missense_Mutation p.L133I 0.35 tolerated(0.29) possibly_damaging(0.772) TCGA-AA-A010-01 19 23328673 23328673 G A ZNF730 Missense_Mutation p.R276K 0.35 tolerated(0.75) benign(0.189) TCGA-AA-A010-01 19 2337522 2337522 G T SPPL2B RNA 0.35 TCGA-AA-A010-01 19 23406768 23406768 A C ZNF724P Silent p.A93A 0.36 TCGA-AA-A010-01 19 2351460 2351460 C T LLfos-48D6.1 3'Flank 0.36 TCGA-AA-A010-01 19 23542572 23542572 C A ZNF91 Missense_Mutation p.R1070I 0.33 tolerated(0.14) benign(0.146) TCGA-AA-A010-01 19 23544989 23544989 T G ZNF91 Missense_Mutation p.K264N 0.42 deleterious(0.02) benign(0.254) TCGA-AA-A010-01 19 23836537 23836537 C A ZNF675 Nonsense_Mutation p.E400* 0.44 TCGA-AA-A010-01 19 23837135 23837135 G A ZNF675 Silent p.C200C 0.32 TCGA-AA-A010-01 19 23937668 23937668 C T ZNF681 Silent p.E61E 0.33 TCGA-AA-A010-01 19 23990703 23990703 A C RPSAP58 5'UTR 0.26 TCGA-AA-A010-01 19 24102171 24102171 C A ZNF726 Intron 0.37 TCGA-AA-A010-01 19 2413776 2413776 G A TMPRSS9 Missense_Mutation p.G411R 0.39 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 19 2515025 2515025 A C GNG7 Missense_Mutation p.L68V 0.32 deleterious(0.01) possibly_damaging(0.893) TCGA-AA-A010-01 19 2878476 2878476 G A ZNF556 3'UTR 0.31 TCGA-AA-A010-01 19 29698465 29698465 A G UQCRFS1 Missense_Mutation p.I272T 0.35 deleterious(0) benign(0.072) TCGA-AA-A010-01 19 2994090 2994090 C T TLE6 Silent p.F537F 0.40 TCGA-AA-A010-01 19 30314786 30314786 G T CCNE1 3'UTR 0.45 TCGA-AA-A010-01 19 30934637 30934637 C T ZNF536 Silent p.P56P 0.27 TCGA-AA-A010-01 19 30934646 30934646 G T ZNF536 Missense_Mutation p.K59N 0.29 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-AA-A010-01 19 3119007 3119007 G A GNA11 Missense_Mutation p.A231T 0.37 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 19 3155875 3155875 C T GNA15 Silent p.F223F 0.38 TCGA-AA-A010-01 19 31767339 31767339 C T TSHZ3 3'UTR 0.33 TCGA-AA-A010-01 19 31768632 31768632 C A TSHZ3 Missense_Mutation p.E689D 0.44 tolerated(0.27) benign(0.2) TCGA-AA-A010-01 19 31769447 31769447 C T TSHZ3 Missense_Mutation p.A418T 0.33 deleterious(0) possibly_damaging(0.848) TCGA-AA-A010-01 19 31769759 31769759 C T TSHZ3 Missense_Mutation p.A314T 0.38 tolerated(0.66) benign(0.016) TCGA-AA-A010-01 19 31770085 31770085 C T TSHZ3 Missense_Mutation p.G205D 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 32845370 32845370 C T ZNF507 Missense_Mutation p.S545L 0.41 tolerated(0.14) possibly_damaging(0.885) TCGA-AA-A010-01 19 33324145 33324145 A G SLC7A9 Missense_Mutation p.Y437H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 19 33390846 33390846 C T CEP89 Missense_Mutation p.E598K 0.34 deleterious(0) possibly_damaging(0.781) TCGA-AA-A010-01 19 33493859 33493859 C T RHPN2 Missense_Mutation p.D270N 0.34 deleterious(0) probably_damaging(0.939) TCGA-AA-A010-01 19 33872023 33872023 A C CEBPG 3'UTR 0.39 TCGA-AA-A010-01 19 34718387 34718387 C T LSM14A 3'UTR 0.55 TCGA-AA-A010-01 19 3474877 3474877 G A C19orf77 Silent p.P119P 0.43 TCGA-AA-A010-01 19 34821222 34821222 G A KIAA0355 Silent p.A411A 0.35 TCGA-AA-A010-01 19 34832354 34832354 C T KIAA0355 Silent p.I505I 0.39 TCGA-AA-A010-01 19 34945239 34945239 G T UBA2 Missense_Mutation p.K371N 0.33 deleterious(0.04) probably_damaging(0.921) TCGA-AA-A010-01 19 3496671 3496671 C T DOHH Missense_Mutation p.D48N 0.35 tolerated(0.57) benign(0.003) TCGA-AA-A010-01 19 35434191 35434191 T G ZNF30 Silent p.S108S 0.31 TCGA-AA-A010-01 19 35448758 35448758 A G ZNF792 3'UTR 0.48 TCGA-AA-A010-01 19 35450410 35450410 C A ZNF792 Missense_Mutation p.A117S 0.36 tolerated(1) benign(0.003) TCGA-AA-A010-01 19 35451892 35451892 C T ZNF792 Missense_Mutation p.V14M 0.35 tolerated(0.11) probably_damaging(0.999) TCGA-AA-A010-01 19 35614525 35614525 A C FXYD3 3'UTR 0.62 TCGA-AA-A010-01 19 35793364 35793364 G T MAG Missense_Mutation p.K328N 0.54 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A010-01 19 35804250 35804250 G T MAG Nonsense_Mutation p.E592* 0.36 TCGA-AA-A010-01 19 35831956 35831956 C T CD22 Silent p.N474N 0.35 TCGA-AA-A010-01 19 35850994 35850994 G A FFAR3 3'UTR 0.35 TCGA-AA-A010-01 19 35941634 35941634 C A FFAR2 3'UTR 0.51 TCGA-AA-A010-01 19 3600558 3600558 G A TBXA2R Silent p.I25I 0.38 TCGA-AA-A010-01 19 36017947 36017947 T A SBSN Missense_Mutation p.S413C 0.30 deleterious(0) benign(0.254) TCGA-AA-A010-01 19 36038337 36038337 T C TMEM147 Silent p.N221N 0.35 TCGA-AA-A010-01 19 36041751 36041751 G A ATP4A Missense_Mutation p.R1022C 0.44 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 19 36205821 36205821 G T ZBTB32 Missense_Mutation p.R98M 0.35 deleterious(0) possibly_damaging(0.51) TCGA-AA-A010-01 19 36206208 36206208 G A ZBTB32 Missense_Mutation p.R227H 0.36 tolerated(0.06) benign(0.05) TCGA-AA-A010-01 19 36210688 36210688 C T KMT2B Nonsense_Mutation p.R147* 0.35 TCGA-AA-A010-01 19 36214051 36214051 G T KMT2B Missense_Mutation p.K959N 0.39 probably_damaging(0.987) TCGA-AA-A010-01 19 36253302 36253302 A C C19orf55 Intron 0.42 TCGA-AA-A010-01 19 36255975 36255975 G T C19orf55 Missense_Mutation p.D223Y 0.41 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 19 36275129 36275129 C T ARHGAP33 Missense_Mutation p.R493W 0.37 deleterious_low_confidence(0) possibly_damaging(0.646) TCGA-AA-A010-01 19 36349687 36349687 G A KIRREL2 Missense_Mutation p.S148N 0.40 deleterious(0) possibly_damaging(0.886) TCGA-AA-A010-01 19 36351526 36351526 C T KIRREL2 Silent p.N295N 0.30 TCGA-AA-A010-01 19 36353854 36353854 G T KIRREL2 Missense_Mutation p.K547N 0.48 deleterious(0.02) benign(0.367) TCGA-AA-A010-01 19 36362841 36362841 G A APLP1 Silent p.Q251Q 0.42 TCGA-AA-A010-01 19 36362931 36362931 C T APLP1 Silent p.V281V 0.49 TCGA-AA-A010-01 19 36728646 36728646 A T ZNF146 3'UTR 0.39 TCGA-AA-A010-01 19 36729092 36729092 G T ZNF146 3'UTR 0.36 TCGA-AA-A010-01 19 36729203 36729203 G A ZNF146 3'UTR 0.38 TCGA-AA-A010-01 19 36884213 36884213 G A ZFP82 Silent p.C343C 0.36 TCGA-AA-A010-01 19 37037967 37037967 C A ZNF529 Missense_Mutation p.R498I 0.46 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A010-01 19 37117179 37117179 G A ZNF382 Missense_Mutation p.R127H 0.24 tolerated(0.6) benign(0) TCGA-AA-A010-01 19 37117746 37117746 G A ZNF382 Missense_Mutation p.R316Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 19 37210633 37210633 C T ZNF567 Missense_Mutation p.S305L 0.42 tolerated(0.08) probably_damaging(0.997) TCGA-AA-A010-01 19 37211368 37211368 G T ZNF567 Missense_Mutation p.R550I 0.50 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 19 37267010 37267010 C A CTD-2162K18.4 3'UTR 0.46 TCGA-AA-A010-01 19 37310257 37310257 C A ZNF790 Missense_Mutation p.R330I 0.35 deleterious(0.03) benign(0.237) TCGA-AA-A010-01 19 37310989 37310989 T G ZNF790 Missense_Mutation p.K86T 0.45 tolerated(0.05) benign(0.004) TCGA-AA-A010-01 19 37367893 37367893 G T ZNF345 Missense_Mutation p.R54I 0.31 tolerated(0.05) benign(0.039) TCGA-AA-A010-01 19 37368471 37368471 C T ZNF345 Missense_Mutation p.R247W 0.35 deleterious(0) probably_damaging(0.936) TCGA-AA-A010-01 19 37382867 37382867 C T ZNF829 Missense_Mutation p.A357T 0.39 tolerated(0.21) benign(0.269) TCGA-AA-A010-01 19 37399326 37399326 G T ZNF829 Missense_Mutation p.F125L 0.40 tolerated(0.11) probably_damaging(0.916) TCGA-AA-A010-01 19 37406056 37406056 G T ZNF829 Missense_Mutation p.P86H 0.40 tolerated(0.16) benign(0.378) TCGA-AA-A010-01 19 37441132 37441132 G T ZNF568 Missense_Mutation p.E359D 0.27 deleterious(0.05) probably_damaging(0.972) TCGA-AA-A010-01 19 3754306 3754306 C A APBA3 Missense_Mutation p.D217Y 0.42 deleterious(0) possibly_damaging(0.908) TCGA-AA-A010-01 19 37619349 37619349 C T ZNF420 Missense_Mutation p.R486C 0.32 tolerated(0.24) probably_damaging(0.911) TCGA-AA-A010-01 19 37643008 37643008 C T ZNF585A Missense_Mutation p.R543K 0.46 tolerated(0.05) probably_damaging(0.981) TCGA-AA-A010-01 19 37643813 37643813 C T ZNF585A Missense_Mutation p.E275K 0.29 deleterious(0.04) benign(0.005) TCGA-AA-A010-01 19 37676158 37676158 A C ZNF585B Missense_Mutation p.F761V 0.40 deleterious(0.01) benign(0.001) TCGA-AA-A010-01 19 37676174 37676174 G A ZNF585B Silent p.F755F 0.37 TCGA-AA-A010-01 19 37677148 37677148 T G ZNF585B Missense_Mutation p.I431L 0.35 deleterious(0.01) possibly_damaging(0.793) TCGA-AA-A010-01 19 37677887 37677887 C A ZNF585B Missense_Mutation p.K184N 0.40 deleterious(0.02) benign(0.078) TCGA-AA-A010-01 19 37678142 37678142 C A ZNF585B Missense_Mutation p.E99D 0.39 tolerated(0.16) benign(0.243) TCGA-AA-A010-01 19 37853722 37853722 C T HKR1 Missense_Mutation p.S342L 0.41 deleterious(0.01) benign(0.127) TCGA-AA-A010-01 19 37879627 37879627 G T ZNF527 Nonsense_Mutation p.E226* 0.35 TCGA-AA-A010-01 19 37880733 37880733 C A ZNF527 Silent p.V594V 0.59 TCGA-AA-A010-01 19 37903599 37903599 C A ZNF569 Missense_Mutation p.R654I 0.36 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 19 37903906 37903906 A G ZNF569 Missense_Mutation p.C552R 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 37904646 37904646 T C ZNF569 Missense_Mutation p.K305R 0.46 tolerated(0.05) probably_damaging(0.995) TCGA-AA-A010-01 19 38055368 38055368 T G ZNF571 3'UTR 0.70 TCGA-AA-A010-01 19 38056555 38056555 C T ZNF571 Missense_Mutation p.A259T 0.17 tolerated(0.48) probably_damaging(0.989) TCGA-AA-A010-01 19 38102607 38102607 G T ZNF540 Missense_Mutation p.K142N 0.36 tolerated(0.44) benign(0.011) TCGA-AA-A010-01 19 38103074 38103074 C A ZNF540 Missense_Mutation p.S298Y 0.40 deleterious(0) possibly_damaging(0.686) TCGA-AA-A010-01 19 38103088 38103088 G A ZNF540 Missense_Mutation p.E303K 0.43 tolerated(0.07) benign(0.09) TCGA-AA-A010-01 19 38103725 38103725 G T ZNF540 Missense_Mutation p.R515I 0.41 deleterious(0) possibly_damaging(0.583) TCGA-AA-A010-01 19 38126582 38126582 C T ZFP30 Missense_Mutation p.R287Q 0.40 tolerated(0.72) probably_damaging(0.975) TCGA-AA-A010-01 19 38160892 38160892 C T ZNF781 Missense_Mutation p.R53Q 0.35 tolerated(0.08) possibly_damaging(0.86) TCGA-AA-A010-01 19 38190784 38190784 C A ZNF607 Missense_Mutation p.R83I 0.35 tolerated(0.14) benign(0.003) TCGA-AA-A010-01 19 38229551 38229551 C A ZNF573 Nonsense_Mutation p.E614* 0.37 TCGA-AA-A010-01 19 38376910 38376910 T G WDR87 Missense_Mutation p.K2428N 0.39 unknown(0) TCGA-AA-A010-01 19 38377170 38377170 C A WDR87 Nonsense_Mutation p.E2342* 0.41 TCGA-AA-A010-01 19 38377677 38377677 C T WDR87 Missense_Mutation p.E2173K 0.38 possibly_damaging(0.636) TCGA-AA-A010-01 19 38378410 38378410 C A WDR87 Missense_Mutation p.E1928D 0.37 benign(0.063) TCGA-AA-A010-01 19 38379943 38379943 C A WDR87 Missense_Mutation p.K1417N 0.38 benign(0.177) TCGA-AA-A010-01 19 38383332 38383332 T C WDR87 Missense_Mutation p.D965G 0.35 probably_damaging(0.999) TCGA-AA-A010-01 19 38386786 38386786 C A WDR87 Intron 0.36 TCGA-AA-A010-01 19 38796124 38796124 G T YIF1B Silent p.I271I 0.37 TCGA-AA-A010-01 19 38855700 38855700 G T CATSPERG Splice_Site p.X853_splice 0.32 TCGA-AA-A010-01 19 38903312 38903312 G A RASGRP4 Silent p.F560F 0.51 TCGA-AA-A010-01 19 38910592 38910592 G A RASGRP4 Missense_Mutation p.R191C 0.37 tolerated(0.07) benign(0.005) TCGA-AA-A010-01 19 38980733 38980733 G A RYR1 Silent p.E1944E 0.32 TCGA-AA-A010-01 19 39002998 39002998 C T RYR1 Missense_Mutation p.S3116L 0.49 benign(0.031) TCGA-AA-A010-01 19 3905547 3905547 C A ATCAY Missense_Mutation p.F84L 0.36 tolerated(0.64) benign(0.02) TCGA-AA-A010-01 19 39062661 39062661 C A RYR1 Silent p.V4583V 0.38 TCGA-AA-A010-01 19 39096064 39096064 T G MAP4K1 Missense_Mutation p.E477D 0.43 tolerated(0.34) benign(0.003) TCGA-AA-A010-01 19 3910830 3910830 T C ATCAY Missense_Mutation p.I270T 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 39227901 39227901 G C CAPN12 Silent p.G419G 0.34 TCGA-AA-A010-01 19 39327278 39327278 T G HNRNPL 3'UTR 0.38 TCGA-AA-A010-01 19 39329091 39329091 G A HNRNPL Silent p.N501N 0.40 TCGA-AA-A010-01 19 39398406 39398406 G T NFKBIB Intron 0.45 TCGA-AA-A010-01 19 39516072 39516072 G A FBXO27 Silent p.I277I 0.36 TCGA-AA-A010-01 19 39666005 39666005 C T PAK4 Missense_Mutation p.S429L 0.37 deleterious(0) probably_damaging(0.953) TCGA-AA-A010-01 19 39668328 39668328 C T PAK4 Missense_Mutation p.S500L 0.38 deleterious(0) possibly_damaging(0.835) TCGA-AA-A010-01 19 39691348 39691348 G A NCCRP1 Silent p.R260R 0.32 TCGA-AA-A010-01 19 39734329 39734329 G T IFNL3 Silent p.L178L 0.41 TCGA-AA-A010-01 19 3979846 3979846 T C EEF2 Missense_Mutation p.E522G 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 19 39819205 39819205 C A GMFG Intron 0.40 TCGA-AA-A010-01 19 39826089 39826089 T G GMFG Missense_Mutation p.N29T 0.36 tolerated(0.16) possibly_damaging(0.842) TCGA-AA-A010-01 19 39949506 39949506 G A SUPT5H Missense_Mutation p.R123H 0.39 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 19 39995992 39995992 G T DLL3 Missense_Mutation p.D332Y 0.39 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 19 40366471 40366471 G A FCGBP Missense_Mutation p.S4588L 0.39 benign(0.34) TCGA-AA-A010-01 19 40424095 40424095 T G FCGBP Missense_Mutation p.D703A 0.42 probably_damaging(0.992) TCGA-AA-A010-01 19 40519592 40519592 A G ZNF546 Missense_Mutation p.T139A 0.38 tolerated(0.74) benign(0.217) TCGA-AA-A010-01 19 40520081 40520081 G A ZNF546 Missense_Mutation p.E302K 0.30 tolerated(0.25) possibly_damaging(0.635) TCGA-AA-A010-01 19 40520417 40520417 G A ZNF546 Missense_Mutation p.E414K 0.36 tolerated(0.24) possibly_damaging(0.635) TCGA-AA-A010-01 19 40521033 40521033 G A ZNF546 Missense_Mutation p.R619Q 0.38 tolerated(0.17) possibly_damaging(0.553) TCGA-AA-A010-01 19 40521147 40521147 G T ZNF546 Missense_Mutation p.R657I 0.30 deleterious(0.03) possibly_damaging(0.671) TCGA-AA-A010-01 19 40540685 40540685 G A ZNF780B Missense_Mutation p.A694V 0.32 deleterious(0.02) benign(0.017) TCGA-AA-A010-01 19 4055090 4055090 C T ZBTB7A Silent p.T47T 0.47 TCGA-AA-A010-01 19 40580706 40580706 C T ZNF780A Missense_Mutation p.R549Q 0.35 tolerated(1) benign(0.004) TCGA-AA-A010-01 19 40581662 40581662 G T ZNF780A Silent p.A230A 0.43 TCGA-AA-A010-01 19 40581741 40581741 C T ZNF780A Missense_Mutation p.R204Q 0.37 tolerated(0.3) benign(0.026) TCGA-AA-A010-01 19 40728941 40728941 C A CNTD2 3'UTR 0.32 TCGA-AA-A010-01 19 40747962 40747962 G A AKT2 Silent p.F152F 0.32 TCGA-AA-A010-01 19 40882563 40882563 G A PLD3 Missense_Mutation p.R356H 0.41 tolerated(0.1) possibly_damaging(0.749) TCGA-AA-A010-01 19 40903867 40903867 C T PRX Missense_Mutation p.S131N 0.43 deleterious(0) benign(0.383) TCGA-AA-A010-01 19 41062048 41062048 C T SPTBN4 Silent p.L1715L 0.35 TCGA-AA-A010-01 19 41097003 41097003 C T SHKBP1 Missense_Mutation p.R672W 0.41 deleterious_low_confidence(0) benign(0.425) TCGA-AA-A010-01 19 41106002 41106002 C T LTBP4 Missense_Mutation p.R124W 0.44 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-AA-A010-01 19 41132887 41132887 C T LTBP4 Silent p.F1397F 0.36 TCGA-AA-A010-01 19 41132928 41132928 C A LTBP4 Missense_Mutation p.P1411H 0.39 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 19 41235265 41235265 G T ITPKC Missense_Mutation p.D472Y 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 41281347 41281347 A G MIA 5'UTR 0.40 TCGA-AA-A010-01 19 41351888 41351888 G A CYP2A6 Silent p.L316L 0.37 TCGA-AA-A010-01 19 41352942 41352942 G T CYP2A6 Missense_Mutation p.F223L 0.28 probably_damaging(1) TCGA-AA-A010-01 19 41386048 41386048 G T CYP2A7 Missense_Mutation p.L199M 0.38 deleterious(0.01) probably_damaging(0.955) TCGA-AA-A010-01 19 41599561 41599561 C A CYP2A13 Missense_Mutation p.F286L 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 41622254 41622254 C A CYP2F1 Missense_Mutation p.S54Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 19 41709405 41709405 A C CYP2S1 Missense_Mutation p.S343R 0.40 tolerated(0.32) benign(0.029) TCGA-AA-A010-01 19 4174567 4174567 G T SIRT6 3'UTR 0.48 TCGA-AA-A010-01 19 41916689 41916689 G T BCKDHA Missense_Mutation p.G86C 0.41 deleterious(0) possibly_damaging(0.866) TCGA-AA-A010-01 19 42181373 42181373 C A CEACAM7 Missense_Mutation p.M255I 0.36 tolerated(0.12) benign(0) TCGA-AA-A010-01 19 42219138 42219138 C T CEACAM5 Missense_Mutation p.R225C 0.41 tolerated(0.07) benign(0.274) TCGA-AA-A010-01 19 42224988 42224988 C A CEACAM5 Missense_Mutation p.L640I 0.35 tolerated(0.05) probably_damaging(0.96) TCGA-AA-A010-01 19 4237074 4237074 C A EBI3 Missense_Mutation p.L227M 0.40 tolerated_low_confidence(0.21) benign(0.02) TCGA-AA-A010-01 19 42485680 42485680 G A ATP1A3 Missense_Mutation p.P484S 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 19 42558011 42558011 C T GRIK5 Missense_Mutation p.R376H 0.36 tolerated(0.09) benign(0.015) TCGA-AA-A010-01 19 4258340 4258340 C T CCDC94 Silent p.F169F 0.40 TCGA-AA-A010-01 19 42583593 42583593 C T ZNF574 Missense_Mutation p.R279C 0.39 tolerated(0.07) possibly_damaging(0.876) TCGA-AA-A010-01 19 42703478 42703478 C T DEDD2 3'UTR 0.47 TCGA-AA-A010-01 19 42744379 42744379 C A GSK3A Intron 0.45 TCGA-AA-A010-01 19 42753278 42753278 C T ERF Missense_Mutation p.R329H 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 19 42814208 42814208 C T PRR19 Missense_Mutation p.P158S 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 19 42819404 42819404 C T TMEM145 Silent p.Y190Y 0.33 TCGA-AA-A010-01 19 42829092 42829092 C A TMEM145 3'UTR 0.35 TCGA-AA-A010-01 19 42830423 42830423 G A MEGF8 Missense_Mutation p.A10T 0.36 tolerated_low_confidence(0.11) unknown(0) TCGA-AA-A010-01 19 42841015 42841015 C T MEGF8 Missense_Mutation p.T434M 0.40 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 19 42880385 42880385 T C MEGF8 Missense_Mutation p.C2599R 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 43015753 43015753 C T CEACAM1 Silent p.E468E 0.38 TCGA-AA-A010-01 19 43225989 43225989 G T PSG3 3'UTR 0.42 TCGA-AA-A010-01 19 43243152 43243152 G T PSG3 Missense_Mutation p.L52I 0.42 deleterious(0.03) possibly_damaging(0.498) TCGA-AA-A010-01 19 43414925 43414925 C A PSG6 Missense_Mutation p.E171D 0.39 tolerated(0.51) benign(0.019) TCGA-AA-A010-01 19 43433623 43433623 C T PSG7 Missense_Mutation p.R227H 0.43 tolerated(0.07) benign(0.008) TCGA-AA-A010-01 19 43679476 43679476 C T PSG5 Silent p.K285K 0.39 TCGA-AA-A010-01 19 43679521 43679521 C A PSG5 Missense_Mutation p.E270D 0.45 deleterious(0.01) possibly_damaging(0.524) TCGA-AA-A010-01 19 44099515 44099515 G T IRGQ Intron 0.58 TCGA-AA-A010-01 19 44223638 44223638 G A IRGC Missense_Mutation p.D310N 0.39 tolerated(0.21) probably_damaging(0.957) TCGA-AA-A010-01 19 44351258 44351258 G T ZNF283 Nonsense_Mutation p.G169* 0.35 TCGA-AA-A010-01 19 44352021 44352021 G T ZNF283 Missense_Mutation p.R423I 0.38 deleterious(0.02) probably_damaging(0.939) TCGA-AA-A010-01 19 44377017 44377017 A C ZNF404 Missense_Mutation p.L450R 0.38 tolerated(0.39) benign(0.136) TCGA-AA-A010-01 19 44378024 44378024 T C ZNF404 Silent p.K114K 0.38 TCGA-AA-A010-01 19 44471081 44471081 G A ZNF221 Missense_Mutation p.R476K 0.38 tolerated(1) benign(0.028) TCGA-AA-A010-01 19 44513274 44513274 G T ZNF230 Nonsense_Mutation p.E61* 0.36 TCGA-AA-A010-01 19 44536262 44536262 T C ZNF222 Silent p.H185H 0.38 TCGA-AA-A010-01 19 44536673 44536673 G T ZNF222 Missense_Mutation p.E322D 0.26 deleterious(0) benign(0.411) TCGA-AA-A010-01 19 4453935 4453935 C T UBXN6 Missense_Mutation p.R80Q 0.31 tolerated(0.44) benign(0.284) TCGA-AA-A010-01 19 44610535 44610535 C A ZNF224 Intron 0.32 TCGA-AA-A010-01 19 44612227 44612227 C T ZNF224 Silent p.F638F 0.30 TCGA-AA-A010-01 19 44679107 44679107 C A ZNF226 Intron 0.38 TCGA-AA-A010-01 19 44680647 44680647 G T ZNF226 Missense_Mutation p.R411I 0.35 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 19 4538472 4538472 C T LRG1 Missense_Mutation p.R175H 0.39 tolerated(0.2) benign(0.007) TCGA-AA-A010-01 19 45406452 45406452 C T TOMM40 3'UTR 0.50 TCGA-AA-A010-01 19 45452628 45452628 C A APOC2 3'UTR 0.41 TCGA-AA-A010-01 19 45656459 45656459 C A NKPD1 Missense_Mutation p.E412D 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 19 45684393 45684393 C A BLOC1S3 3'UTR 0.41 TCGA-AA-A010-01 19 45766421 45766421 G A MARK4 Silent p.Q101Q 0.41 TCGA-AA-A010-01 19 45810900 45810900 C A CKM Missense_Mutation p.E262D 0.45 tolerated(0.38) benign(0.001) TCGA-AA-A010-01 19 45815179 45815179 C A CKM Splice_Site p.X161_splice 0.34 TCGA-AA-A010-01 19 46094572 46094572 G A GPR4 Missense_Mutation p.R185W 0.34 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 19 46191650 46191650 G A SNRPD2 Silent p.F59F 0.35 TCGA-AA-A010-01 19 46196011 46196011 G C QPCTL Missense_Mutation p.G17A 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-A010-01 19 46318810 46318810 G A SYMPK 3'UTR 0.37 TCGA-AA-A010-01 19 46330848 46330848 C A SYMPK Missense_Mutation p.D701Y 0.38 deleterious(0) benign(0.332) TCGA-AA-A010-01 19 46347327 46347327 A G SYMPK Missense_Mutation p.F270L 0.33 tolerated(0.09) probably_damaging(0.989) TCGA-AA-A010-01 19 46352090 46352090 T C SYMPK Missense_Mutation p.N115S 0.36 tolerated(0.5) benign(0.026) TCGA-AA-A010-01 19 464163 464163 G A ODF3L2 Missense_Mutation p.T184M 0.23 deleterious(0) probably_damaging(0.918) TCGA-AA-A010-01 19 46623561 46623561 C T IGFL3 3'UTR 0.42 TCGA-AA-A010-01 19 46825222 46825222 C T HIF3A Missense_Mutation p.S445L 0.34 tolerated(0.11) benign(0.001) TCGA-AA-A010-01 19 46890390 46890390 C T PPP5C Silent p.F315F 0.42 TCGA-AA-A010-01 19 46998787 46998787 G A PNMAL2 5'UTR 0.38 TCGA-AA-A010-01 19 4702059 4702059 G A DPP9 Missense_Mutation p.S331L 0.35 tolerated(0.09) benign(0.223) TCGA-AA-A010-01 19 47151483 47151483 C T DACT3 3'UTR 0.56 TCGA-AA-A010-01 19 47156058 47156058 C A DACT3 Missense_Mutation p.D120Y 0.35 tolerated(0.09) probably_damaging(0.996) TCGA-AA-A010-01 19 47424280 47424280 G A ARHGAP35 Missense_Mutation p.R783Q 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A010-01 19 47425365 47425365 C T ARHGAP35 Nonsense_Mutation p.R1145* 0.38 TCGA-AA-A010-01 19 47763851 47763851 A G CCDC9 Missense_Mutation p.N73D 0.30 tolerated(0.17) benign(0.254) TCGA-AA-A010-01 19 48024499 48024499 G A ZNF541 Silent p.I1360I 0.30 TCGA-AA-A010-01 19 48035410 48035410 C G ZNF541 Missense_Mutation p.M1111I 0.21 tolerated(0.14) benign(0.158) TCGA-AA-A010-01 19 48041658 48041658 C T ZNF541 Silent p.E964E 0.40 TCGA-AA-A010-01 19 48244617 48244617 C T EHD2 Silent p.H520H 0.40 TCGA-AA-A010-01 19 48305239 48305239 G T TPRX1 Missense_Mutation p.F343L 0.38 tolerated_low_confidence(0.66) possibly_damaging(0.682) TCGA-AA-A010-01 19 48571056 48571056 T C PLA2G4C Missense_Mutation p.Y375C 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 19 48660395 48660395 C A LIG1 Missense_Mutation p.K82N 0.37 tolerated_low_confidence(0.1) benign(0.007) TCGA-AA-A010-01 19 48789389 48789389 A G ZNF114 Missense_Mutation p.T170A 0.39 deleterious(0.05) benign(0.217) TCGA-AA-A010-01 19 48887616 48887616 G A KDELR1 Missense_Mutation p.R159C 0.40 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 19 48945414 48945414 C T GRIN2D Silent p.I816I 0.39 TCGA-AA-A010-01 19 49142273 49142273 G A CA11 Missense_Mutation p.S278F 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-AA-A010-01 19 49142848 49142848 G A CA11 Missense_Mutation p.R200C 0.37 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A010-01 19 49208338 49208338 G T FUT2 3'UTR 0.38 TCGA-AA-A010-01 19 49253974 49253974 C T FUT1 Missense_Mutation p.D189N 0.32 tolerated(0.08) benign(0.034) TCGA-AA-A010-01 19 49469171 49469171 A G FTL Missense_Mutation p.K83E 0.47 tolerated(0.05) benign(0.001) TCGA-AA-A010-01 19 49513294 49513294 G A RUVBL2 Missense_Mutation p.A212T 0.35 deleterious(0.03) possibly_damaging(0.763) TCGA-AA-A010-01 19 49657709 49657709 G T HRC Silent p.V262V 0.43 TCGA-AA-A010-01 19 49793688 49793688 C T SLC6A16 Intron 0.42 TCGA-AA-A010-01 19 49794006 49794006 C T SLC6A16 Silent p.T599T 0.35 TCGA-AA-A010-01 19 49812911 49812911 C T SLC6A16 Silent p.G291G 0.36 TCGA-AA-A010-01 19 49838988 49838988 C A CD37 Silent p.I29I 0.35 TCGA-AA-A010-01 19 49844591 49844591 A G TEAD2 Missense_Mutation p.V449A 0.41 deleterious(0.02) possibly_damaging(0.492) TCGA-AA-A010-01 19 49850450 49850450 G T TEAD2 Missense_Mutation p.F306L 0.35 deleterious(0.05) possibly_damaging(0.658) TCGA-AA-A010-01 19 49894170 49894170 C T CCDC155 Silent p.G10G 0.33 TCGA-AA-A010-01 19 50100802 50100802 G T PRR12 Missense_Mutation p.K1070N 0.44 probably_damaging(0.99) TCGA-AA-A010-01 19 50247577 50247577 G A TSKS Silent p.F424F 0.49 TCGA-AA-A010-01 19 50266345 50266345 A G TSKS Missense_Mutation p.S54P 0.42 deleterious(0.01) possibly_damaging(0.897) TCGA-AA-A010-01 19 50387923 50387923 A C TBC1D17 Missense_Mutation p.N451T 0.37 deleterious(0) probably_damaging(0.948) TCGA-AA-A010-01 19 50455578 50455578 G A SIGLEC11 Silent p.F575F 0.44 TCGA-AA-A010-01 19 50462304 50462304 G A SIGLEC11 Missense_Mutation p.S363F 0.40 tolerated(0.22) benign(0.143) TCGA-AA-A010-01 19 50753000 50753000 T C MYH14 Missense_Mutation p.Y526H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 19 50946771 50946771 G A MYBPC2 Missense_Mutation p.G308D 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 51022098 51022098 G A LRRC4B Missense_Mutation p.S291L 0.41 tolerated(0.19) benign(0.063) TCGA-AA-A010-01 19 51022361 51022361 G A LRRC4B Silent p.F203F 0.28 TCGA-AA-A010-01 19 5110734 5110734 G A KDM4B Silent p.T340T 0.41 TCGA-AA-A010-01 19 51170213 51170213 C T SHANK1 Silent p.P1668P 0.52 TCGA-AA-A010-01 19 51274317 51274317 A G GPR32 Missense_Mutation p.T154A 0.40 deleterious(0) probably_damaging(0.941) TCGA-AA-A010-01 19 51322459 51322459 C A KLK1 Missense_Mutation p.E260D 0.44 tolerated(0.54) benign(0) TCGA-AA-A010-01 19 51323229 51323229 T G KLK1 Missense_Mutation p.K187Q 0.43 tolerated(0.18) benign(0.022) TCGA-AA-A010-01 19 51325114 51325114 C T KLK1 Silent p.P20P 0.35 TCGA-AA-A010-01 19 51359599 51359599 C T KLK3 Silent p.C50C 0.31 TCGA-AA-A010-01 19 51412667 51412667 G T KLK4 Nonsense_Mutation p.S22* 0.38 TCGA-AA-A010-01 19 51526459 51526459 G A KLK11 Silent p.C195C 0.39 TCGA-AA-A010-01 19 51584797 51584797 G A KLK14 Silent p.C84C 0.40 TCGA-AA-A010-01 19 51629348 51629348 G A SIGLEC9 Silent p.Q237Q 0.43 TCGA-AA-A010-01 19 51645932 51645932 G T SIGLEC7 Missense_Mutation p.Q102H 0.37 tolerated(0.14) benign(0.016) TCGA-AA-A010-01 19 51671363 51671363 G A CTD-3187F8.14 Intron 0.40 TCGA-AA-A010-01 19 51856511 51856511 C A ETFB Missense_Mutation p.D175Y 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A010-01 19 51917031 51917031 G A SIGLEC10 Missense_Mutation p.P586S 0.42 tolerated(0.38) benign(0.019) TCGA-AA-A010-01 19 51983643 51983643 A C CEACAM18 Missense_Mutation p.T98P 0.49 tolerated(0.32) benign(0.001) TCGA-AA-A010-01 19 52004847 52004847 G T SIGLEC12 Silent p.S47S 0.32 TCGA-AA-A010-01 19 5210575 5210575 G A PTPRS Missense_Mutation p.R1798C 0.42 deleterious(0) possibly_damaging(0.872) TCGA-AA-A010-01 19 52115439 52115439 A G SIGLEC5 3'UTR 0.40 TCGA-AA-A010-01 19 52115462 52115462 G T SIGLEC5 3'UTR 0.38 TCGA-AA-A010-01 19 52115536 52115536 T C SIGLEC5 Missense_Mutation p.D535G 0.35 tolerated(0.07) benign(0.025) TCGA-AA-A010-01 19 5212180 5212180 G T PTPRS Silent p.V1617V 0.45 TCGA-AA-A010-01 19 52132760 52132760 G A SIGLEC5 Missense_Mutation p.A184V 0.34 deleterious(0.02) benign(0.181) TCGA-AA-A010-01 19 52328486 52328486 T A FPR3 3'UTR 0.32 TCGA-AA-A010-01 19 52376374 52376374 C A ZNF577 Missense_Mutation p.R290I 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-AA-A010-01 19 52468595 52468595 C A ZNF350 Nonsense_Mutation p.E371* 0.38 TCGA-AA-A010-01 19 52496039 52496039 T A ZNF615 3'UTR 0.44 TCGA-AA-A010-01 19 52496292 52496292 C T ZNF615 Silent p.P690P 0.35 TCGA-AA-A010-01 19 52496902 52496902 C T ZNF615 Missense_Mutation p.R487Q 0.35 deleterious(0.01) benign(0.13) TCGA-AA-A010-01 19 52519847 52519847 C T ZNF614 Missense_Mutation p.R335Q 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 19 52521312 52521312 C A ZNF614 Nonsense_Mutation p.G63* 0.40 TCGA-AA-A010-01 19 52529175 52529175 C A ZNF614 5'UTR 0.31 TCGA-AA-A010-01 19 52538090 52538090 C T ZNF432 Missense_Mutation p.R281Q 0.40 deleterious(0.02) benign(0.143) TCGA-AA-A010-01 19 52538436 52538436 G A ZNF432 Missense_Mutation p.L166F 0.38 tolerated(0.28) benign(0.224) TCGA-AA-A010-01 19 52569250 52569250 C T ZNF841 Missense_Mutation p.E629K 0.43 tolerated(0.06) possibly_damaging(0.902) TCGA-AA-A010-01 19 52569285 52569285 C T ZNF841 Missense_Mutation p.R617Q 0.28 tolerated(0.06) probably_damaging(0.971) TCGA-AA-A010-01 19 52618275 52618275 C A ZNF616 Missense_Mutation p.E714D 0.45 deleterious(0.03) benign(0.074) TCGA-AA-A010-01 19 52659012 52659012 C T ZNF836 Missense_Mutation p.E642K 0.33 tolerated(0.15) benign(0.23) TCGA-AA-A010-01 19 52659760 52659760 T C ZNF836 Silent p.G392G 0.34 TCGA-AA-A010-01 19 52660648 52660648 C A ZNF836 Missense_Mutation p.Q96H 0.35 tolerated(1) benign(0.36) TCGA-AA-A010-01 19 52825675 52825675 G T ZNF480 Missense_Mutation p.R391I 0.35 tolerated(0.27) possibly_damaging(0.784) TCGA-AA-A010-01 19 52856965 52856965 G A ZNF610 Missense_Mutation p.E32K 0.45 deleterious(0.04) probably_damaging(0.99) TCGA-AA-A010-01 19 52869386 52869386 G T ZNF610 Missense_Mutation p.R252I 0.40 deleterious(0.01) benign(0.114) TCGA-AA-A010-01 19 52869757 52869757 G A ZNF610 Missense_Mutation p.E376K 0.29 tolerated(0.08) benign(0.196) TCGA-AA-A010-01 19 52877551 52877551 G T ZNF880 Splice_Site p.X47_splice 0.36 TCGA-AA-A010-01 19 52887661 52887661 C A ZNF880 Silent p.V276V 0.37 TCGA-AA-A010-01 19 52905216 52905216 G T ZNF528 5'UTR 0.39 TCGA-AA-A010-01 19 52919827 52919827 G T ZNF528 Missense_Mutation p.K574N 0.36 deleterious(0) benign(0.245) TCGA-AA-A010-01 19 52941032 52941032 A G ZNF534 Missense_Mutation p.N120D 0.45 tolerated(0.63) possibly_damaging(0.811) TCGA-AA-A010-01 19 52941726 52941726 A C ZNF534 Missense_Mutation p.K351T 0.37 tolerated(0.48) benign(0.001) TCGA-AA-A010-01 19 52942610 52942610 C T ZNF534 Missense_Mutation p.P646S 0.42 deleterious(0.03) probably_damaging(0.926) TCGA-AA-A010-01 19 53058685 53058685 G T ZNF808 Missense_Mutation p.R839I 0.35 tolerated(0.08) probably_damaging(0.988) TCGA-AA-A010-01 19 53059373 53059373 G T ZNF808 3'UTR 0.25 TCGA-AA-A010-01 19 53117566 53117566 C A ZNF83 Missense_Mutation p.E84D 0.40 deleterious(0.02) probably_damaging(0.952) TCGA-AA-A010-01 19 53164023 53164023 G T ZNF83 5'UTR 0.17 TCGA-AA-A010-01 19 53208648 53208648 C A ZNF611 Missense_Mutation p.A554S 0.31 tolerated(0.21) benign(0.047) TCGA-AA-A010-01 19 53269036 53269036 C A ZNF600 Missense_Mutation p.R658I 0.37 tolerated(0.13) benign(0.001) TCGA-AA-A010-01 19 53270017 53270017 T C ZNF600 Missense_Mutation p.K331R 0.45 tolerated(0.06) benign(0.004) TCGA-AA-A010-01 19 53270742 53270742 T C ZNF600 Silent p.S89S 0.31 TCGA-AA-A010-01 19 53270814 53270815 - T ZNF600 Frame_Shift_Ins p.L66Vfs*4 0.26 TCGA-AA-A010-01 19 53302362 53302362 C A ZNF28 3'UTR 0.26 TCGA-AA-A010-01 19 53303302 53303302 C A ZNF28 Missense_Mutation p.R599I 0.34 deleterious(0.05) benign(0.146) TCGA-AA-A010-01 19 53303517 53303517 T A ZNF28 Missense_Mutation p.E527D 0.40 tolerated(0.09) benign(0.393) TCGA-AA-A010-01 19 53304660 53304660 C T ZNF28 Silent p.S146S 0.30 TCGA-AA-A010-01 19 53344878 53344878 G T ZNF468 Silent p.S223S 0.33 TCGA-AA-A010-01 19 53384090 53384090 C A ZNF320 Missense_Mutation p.R430I 0.52 tolerated(0.34) benign(0.016) TCGA-AA-A010-01 19 53384280 53384280 G A ZNF320 Missense_Mutation p.R367W 0.39 deleterious(0.04) benign(0.076) TCGA-AA-A010-01 19 53453973 53453973 C T ZNF816 Missense_Mutation p.R352Q 0.38 tolerated(1) benign(0.017) TCGA-AA-A010-01 19 53472548 53472548 T G ZNF702P RNA 0.43 TCGA-AA-A010-01 19 53473565 53473566 - T ZNF702P RNA 0.30 TCGA-AA-A010-01 19 53571212 53571212 C A ZNF160 3'UTR 0.33 TCGA-AA-A010-01 19 53644491 53644491 A C ZNF347 Missense_Mutation p.N531K 0.33 tolerated(0.95) benign(0.007) TCGA-AA-A010-01 19 53645294 53645294 A C ZNF347 Missense_Mutation p.S264A 0.33 deleterious(0.01) benign(0.064) TCGA-AA-A010-01 19 53657044 53657044 T G ZNF347 Intron 0.38 TCGA-AA-A010-01 19 53668209 53668209 T G ZNF665 Missense_Mutation p.K512Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 19 53668645 53668645 T G ZNF665 Silent p.R366R 0.41 TCGA-AA-A010-01 19 53669234 53669234 G T ZNF665 Missense_Mutation p.S170Y 0.33 deleterious(0) probably_damaging(0.926) TCGA-AA-A010-01 19 53740273 53740273 T C ZNF677 Silent p.K569K 0.41 TCGA-AA-A010-01 19 53740528 53740528 C A ZNF677 Missense_Mutation p.E484D 0.35 deleterious(0.02) benign(0.274) TCGA-AA-A010-01 19 53762001 53762001 G T VN1R2 Missense_Mutation p.D125Y 0.38 deleterious(0.01) probably_damaging(0.975) TCGA-AA-A010-01 19 53770687 53770687 G T VN1R4 Missense_Mutation p.L78I 0.36 tolerated(0.42) benign(0.001) TCGA-AA-A010-01 19 53793183 53793183 G T BIRC8 Missense_Mutation p.L149I 0.36 tolerated(0.07) probably_damaging(0.983) TCGA-AA-A010-01 19 53794004 53794004 C T BIRC8 5'UTR 0.29 TCGA-AA-A010-01 19 53844497 53844497 C A ZNF845 5'UTR 0.31 TCGA-AA-A010-01 19 53855003 53855003 G T ZNF845 Nonsense_Mutation p.E359* 0.40 TCGA-AA-A010-01 19 53855883 53855883 G T ZNF845 Missense_Mutation p.R652I 0.26 tolerated(0.43) possibly_damaging(0.481) TCGA-AA-A010-01 19 53855992 53855992 G T ZNF845 Missense_Mutation p.E688D 0.09 deleterious(0.01) benign(0.411) TCGA-AA-A010-01 19 53885628 53885628 G T ZNF525 3'UTR 0.38 TCGA-AA-A010-01 19 53959218 53959218 G T ZNF761 RNA 0.40 TCGA-AA-A010-01 19 53995727 53995727 C T ZNF813 3'UTR 0.62 TCGA-AA-A010-01 19 54080850 54080850 G A ZNF331 Missense_Mutation p.E346K 0.52 deleterious(0.05) benign(0.404) TCGA-AA-A010-01 19 54081002 54081002 G A ZNF331 Silent p.S396S 0.39 TCGA-AA-A010-01 19 54224374 54224374 C A MIR517B RNA 0.40 TCGA-AA-A010-01 19 54261562 54261562 C T MIR1283-2 RNA 0.35 TCGA-AA-A010-01 19 54313265 54313265 A G NLRP12 Missense_Mutation p.F550L 0.34 tolerated(0.46) benign(0.003) TCGA-AA-A010-01 19 54314476 54314476 C T NLRP12 Missense_Mutation p.R146H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 19 54378137 54378137 C A MYADM 3'UTR 0.43 TCGA-AA-A010-01 19 54401733 54401733 G A PRKCG Missense_Mutation p.A378T 0.24 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 19 54401859 54401859 C A PRKCG Missense_Mutation p.L420I 0.28 tolerated(0.07) possibly_damaging(0.857) TCGA-AA-A010-01 19 54561648 54561648 C A VSTM1 Missense_Mutation p.K89N 0.35 tolerated(0.19) benign(0.111) TCGA-AA-A010-01 19 54604125 54604125 G A OSCAR 5'Flank 0.33 TCGA-AA-A010-01 19 54646628 54646628 G T CNOT3 5'UTR 0.34 TCGA-AA-A010-01 19 54678069 54678069 T C MBOAT7 Missense_Mutation p.Y363C 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 54744329 54744329 C T LILRA6 Missense_Mutation p.G360E 0.16 deleterious(0.02) probably_damaging(0.991) TCGA-AA-A010-01 19 54822754 54822754 G T LILRA5 Nonsense_Mutation p.C214* 0.32 TCGA-AA-A010-01 19 54824314 54824314 G T LILRA5 5'UTR 0.42 TCGA-AA-A010-01 19 54866910 54866910 C A LAIR1 Missense_Mutation p.E277D 0.36 tolerated(0.19) possibly_damaging(0.899) TCGA-AA-A010-01 19 54969338 54969338 G T LENG8 Missense_Mutation p.E653D 0.27 tolerated(0.28) benign(0.163) TCGA-AA-A010-01 19 55019243 55019243 G T LAIR2 Missense_Mutation p.D70Y 0.30 tolerated(0.12) possibly_damaging(0.759) TCGA-AA-A010-01 19 55021822 55021822 G T LAIR2 3'UTR 0.34 TCGA-AA-A010-01 19 55106178 55106178 C T LILRA1 Missense_Mutation p.T40I 0.33 tolerated(0.21) benign(0.021) TCGA-AA-A010-01 19 55106797 55106797 C A LILRA1 Nonsense_Mutation p.C197* 0.34 TCGA-AA-A010-01 19 55107203 55107203 G A LILRA1 Missense_Mutation p.R254K 0.31 deleterious(0.04) benign(0.25) TCGA-AA-A010-01 19 55148255 55148255 A G LILRB1 Missense_Mutation p.T629A 0.37 tolerated(0.54) benign(0.023) TCGA-AA-A010-01 19 55174510 55174510 C T LILRB4 Missense_Mutation p.L9F 0.40 tolerated_low_confidence(0.25) benign(0.002) TCGA-AA-A010-01 19 55177697 55177697 G A LILRB4 Missense_Mutation p.R294K 0.37 tolerated(0.42) possibly_damaging(0.622) TCGA-AA-A010-01 19 55221959 55221959 C A AC098784.2 3'Flank 0.33 TCGA-AA-A010-01 19 55316285 55316285 C T KIR2DL4 Silent p.S38S 0.43 TCGA-AA-A010-01 19 55396744 55396744 C A FCAR Nonsense_Mutation p.Y56* 0.36 TCGA-AA-A010-01 19 55434960 55434960 C A NLRP7 3'UTR 0.26 TCGA-AA-A010-01 19 55449436 55449436 C A NLRP7 Missense_Mutation p.S702I 0.35 tolerated(0.14) benign(0.007) TCGA-AA-A010-01 19 55449565 55449565 C T NLRP7 Missense_Mutation p.R659H 0.41 tolerated(1) benign(0.001) TCGA-AA-A010-01 19 55450617 55450617 C T NLRP7 Missense_Mutation p.G524S 0.32 deleterious(0.03) probably_damaging(0.97) TCGA-AA-A010-01 19 55493031 55493031 C T NLRP2 Silent p.V148V 0.36 TCGA-AA-A010-01 19 55501440 55501440 C T NLRP2 Missense_Mutation p.A806V 0.37 tolerated(0.4) benign(0.029) TCGA-AA-A010-01 19 55686304 55686304 C T SYT5 Missense_Mutation p.V258I 0.06 tolerated(0.16) possibly_damaging(0.565) TCGA-AA-A010-01 19 55690429 55690429 C A SYT5 5'UTR 0.35 TCGA-AA-A010-01 19 55710171 55710171 G T PTPRH Silent p.V510V 0.41 TCGA-AA-A010-01 19 55791107 55791107 C - HSPBP1 Intron 0.32 TCGA-AA-A010-01 19 55874384 55874384 C T FAM71E2 Silent p.P17P 0.43 TCGA-AA-A010-01 19 55879926 55879926 G A IL11 Silent p.F64F 0.38 TCGA-AA-A010-01 19 55899405 55899405 G A RPL28 Missense_Mutation p.D105N 0.42 deleterious(0.01) possibly_damaging(0.858) TCGA-AA-A010-01 19 55994650 55994650 C T ZNF628 Missense_Mutation p.A697V 0.34 tolerated_low_confidence(0.22) benign(0.116) TCGA-AA-A010-01 19 5604658 5604658 C T SAFB2 Missense_Mutation p.E499K 0.34 tolerated(0.08) benign(0.072) TCGA-AA-A010-01 19 56156000 56156000 G T ZNF581 Missense_Mutation p.E21D 0.45 tolerated(0.2) benign(0.062) TCGA-AA-A010-01 19 56249636 56249636 C T NLRP9 Silent p.E35E 0.40 TCGA-AA-A010-01 19 56329569 56329569 G T NLRP11 5'UTR 0.32 TCGA-AA-A010-01 19 56369573 56369573 G A NLRP4 Missense_Mutation p.E272K 0.39 deleterious(0.03) possibly_damaging(0.517) TCGA-AA-A010-01 19 56369738 56369738 C A NLRP4 Missense_Mutation p.L327I 0.38 tolerated(0.14) benign(0.212) TCGA-AA-A010-01 19 56369837 56369837 G A NLRP4 Missense_Mutation p.D360N 0.35 deleterious(0.03) benign(0.414) TCGA-AA-A010-01 19 56370123 56370123 T C NLRP4 Missense_Mutation p.I455T 0.36 deleterious(0.01) possibly_damaging(0.694) TCGA-AA-A010-01 19 56423520 56423520 C T NLRP13 Missense_Mutation p.E555K 0.29 tolerated(0.19) benign(0.22) TCGA-AA-A010-01 19 56443480 56443480 C A NLRP13 Missense_Mutation p.L66F 0.35 tolerated(0.12) benign(0.002) TCGA-AA-A010-01 19 56544086 56544086 C T NLRP5 Missense_Mutation p.R796W 0.41 tolerated(0.59) benign(0) TCGA-AA-A010-01 19 56701277 56701277 A G ZSCAN5B Silent p.C469C 0.36 TCGA-AA-A010-01 19 5691561 5691561 G A RPL36 Missense_Mutation p.A83T 0.44 tolerated(0.12) benign(0.073) TCGA-AA-A010-01 19 56934925 56934925 G T ZNF583 Nonsense_Mutation p.E300* 0.27 TCGA-AA-A010-01 19 56935058 56935058 G T ZNF583 Missense_Mutation p.R344I 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 19 56935394 56935394 G T ZNF583 Missense_Mutation p.R456I 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A010-01 19 56953378 56953378 G T ZNF667 Missense_Mutation p.P329H 0.69 deleterious(0) possibly_damaging(0.866) TCGA-AA-A010-01 19 57066484 57066484 G T ZFP28 Missense_Mutation p.R777I 0.33 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 19 57089719 57089719 G T ZNF470 Missense_Mutation p.R641I 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A010-01 19 57134633 57134633 C T ZNF71 3'UTR 0.38 TCGA-AA-A010-01 19 57134944 57134944 A G ZNF71 3'UTR 0.39 TCGA-AA-A010-01 19 57175885 57175885 C T ZNF835 Missense_Mutation p.A228T 0.37 deleterious(0) possibly_damaging(0.642) TCGA-AA-A010-01 19 57176584 57176584 C A ZNF835 5'UTR 0.37 TCGA-AA-A010-01 19 57286090 57286090 G T ZIM2 Missense_Mutation p.S517Y 0.34 deleterious(0) benign(0.407) TCGA-AA-A010-01 19 57326421 57326421 C T PEG3 Missense_Mutation p.S1130N 0.27 tolerated(0.25) benign(0.014) TCGA-AA-A010-01 19 57326949 57326949 G T PEG3 Missense_Mutation p.S954Y 0.40 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 19 57328240 57328240 G A PEG3 Missense_Mutation p.R524W 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 19 57328253 57328253 G T PEG3 Silent p.A519A 0.29 TCGA-AA-A010-01 19 57333086 57333086 G A PEG3 Missense_Mutation p.A201V 0.19 tolerated(0.14) benign(0.022) TCGA-AA-A010-01 19 57640286 57640286 C A USP29 Missense_Mutation p.F81L 0.31 tolerated(0.21) benign(0.084) TCGA-AA-A010-01 19 57640713 57640713 C T USP29 Missense_Mutation p.L224F 0.41 tolerated(1) benign(0.055) TCGA-AA-A010-01 19 57640949 57640949 G A USP29 Silent p.S302S 0.48 TCGA-AA-A010-01 19 57643120 57643120 C A USP29 3'UTR 0.34 TCGA-AA-A010-01 19 57646651 57646651 C T ZIM3 Missense_Mutation p.D352N 0.36 tolerated(0.51) probably_damaging(0.97) TCGA-AA-A010-01 19 57670631 57670631 G A DUXA Nonsense_Mutation p.R66* 0.40 TCGA-AA-A010-01 19 57723136 57723136 T G ZNF264 Missense_Mutation p.I224S 0.25 tolerated(0.05) probably_damaging(0.965) TCGA-AA-A010-01 19 57724048 57724048 G A ZNF264 Missense_Mutation p.R528Q 0.39 tolerated(0.23) possibly_damaging(0.647) TCGA-AA-A010-01 19 57743431 57743431 C T AURKC Silent p.I45I 0.37 TCGA-AA-A010-01 19 57765225 57765225 C T ZNF805 Silent p.F346F 0.43 TCGA-AA-A010-01 19 57765946 57765946 G T ZNF805 Nonsense_Mutation p.E587* 0.39 TCGA-AA-A010-01 19 57839792 57839792 G A ZNF543 Missense_Mutation p.R321Q 0.23 tolerated(0.15) possibly_damaging(0.595) TCGA-AA-A010-01 19 5784191 5784191 G T CTB-54O9.9 3'UTR 0.26 TCGA-AA-A010-01 19 57868151 57868151 G T ZNF304 Missense_Mutation p.R305I 0.38 deleterious(0.05) possibly_damaging(0.878) TCGA-AA-A010-01 19 57876449 57876449 T A TRAPPC2P1 Missense_Mutation p.F83Y 0.39 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 19 57910487 57910487 G T ZNF548 Nonsense_Mutation p.E290* 0.42 TCGA-AA-A010-01 19 57910578 57910578 C T ZNF548 Missense_Mutation p.P320L 0.29 deleterious(0.02) benign(0.058) TCGA-AA-A010-01 19 57910659 57910659 G T ZNF548 Missense_Mutation p.R347I 0.43 deleterious(0) probably_damaging(0.925) TCGA-AA-A010-01 19 57910927 57910927 C T ZNF548 Silent p.S436S 0.37 TCGA-AA-A010-01 19 57932665 57932665 G T ZNF17 Missense_Mutation p.R602I 0.39 deleterious(0) possibly_damaging(0.672) TCGA-AA-A010-01 19 57955390 57955390 C T ZNF749 Missense_Mutation p.L292F 0.32 tolerated(0.69) benign(0.117) TCGA-AA-A010-01 19 57955686 57955686 C A ZNF749 Missense_Mutation p.F390L 0.39 tolerated(0.73) possibly_damaging(0.787) TCGA-AA-A010-01 19 57956156 57956156 A C ZNF749 Missense_Mutation p.K547T 0.41 deleterious(0.03) unknown(0) TCGA-AA-A010-01 19 57956554 57956554 C T ZNF749 Missense_Mutation p.R680C 0.40 tolerated(0.12) benign(0) TCGA-AA-A010-01 19 57984592 57984592 C A ZNF772 3'UTR 0.46 TCGA-AA-A010-01 19 58024428 58024428 C T ZNF773 3'Flank 0.40 TCGA-AA-A010-01 19 58049505 58049505 G A ZNF549 Missense_Mutation p.R378Q 0.46 tolerated(0.4) benign(0.064) TCGA-AA-A010-01 19 58084065 58084065 T A ZNF416 Missense_Mutation p.I403F 0.41 deleterious(0.02) probably_damaging(0.973) TCGA-AA-A010-01 19 58095692 58095692 C T ZIK1 5'UTR 0.42 TCGA-AA-A010-01 19 58101430 58101430 C A ZIK1 Missense_Mutation p.S84Y 0.36 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 19 58101793 58101793 G A ZIK1 Missense_Mutation p.R205H 0.40 tolerated(1) benign(0) TCGA-AA-A010-01 19 58117599 58117599 G T ZNF530 Nonsense_Mutation p.E236* 0.38 TCGA-AA-A010-01 19 58117996 58117996 G A ZNF530 Missense_Mutation p.R368Q 0.44 tolerated(0.86) benign(0.014) TCGA-AA-A010-01 19 58118011 58118011 A G ZNF530 Missense_Mutation p.H373R 0.45 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 19 58153122 58153122 G T ZNF211 Missense_Mutation p.R488I 0.40 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 19 58153529 58153529 C A ZNF211 Missense_Mutation p.H624N 0.34 deleterious(0.01) probably_damaging(0.985) TCGA-AA-A010-01 19 58187455 58187455 G T ZSCAN4 5'UTR 0.40 TCGA-AA-A010-01 19 58187552 58187552 A C ZSCAN4 Silent p.P13P 0.32 TCGA-AA-A010-01 19 58187617 58187617 G T ZSCAN4 Missense_Mutation p.R35I 0.31 tolerated(0.11) benign(0.01) TCGA-AA-A010-01 19 58198791 58198791 G T ZNF551 Missense_Mutation p.R383I 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 19 58199020 58199020 C A ZNF551 Missense_Mutation p.F459L 0.40 tolerated(0.14) benign(0.079) TCGA-AA-A010-01 19 58213737 58213737 A G ZNF154 Missense_Mutation p.C194R 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 19 58216319 58216319 A G ZNF154 Missense_Mutation p.V21A 0.37 deleterious(0) benign(0.178) TCGA-AA-A010-01 19 58265516 58265516 C T ZNF776 Nonsense_Mutation p.R340* 0.23 TCGA-AA-A010-01 19 58290324 58290324 G T ZNF586 Missense_Mutation p.E123D 0.34 tolerated(0.58) benign(0.055) TCGA-AA-A010-01 19 58388392 58388392 C A ZNF814 Missense_Mutation p.D19Y 0.33 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 19 58453449 58453449 C A ZNF256 Nonsense_Mutation p.E243* 0.30 TCGA-AA-A010-01 19 58490545 58490545 T C ZNF606 Silent p.G501G 0.49 TCGA-AA-A010-01 19 58564897 58564897 C A ZSCAN1 Silent p.I235I 0.38 TCGA-AA-A010-01 19 58639040 58639040 G T ZNF329 3'UTR 0.38 TCGA-AA-A010-01 19 58639783 58639783 C A ZNF329 Missense_Mutation p.R363M 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 19 58640119 58640119 C A ZNF329 Missense_Mutation p.R251I 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 19 58945074 58945074 G T ZNF132 Missense_Mutation p.F579L 0.44 tolerated(0.37) benign(0.185) TCGA-AA-A010-01 19 58982592 58982592 G A ZNF324 Missense_Mutation p.E245K 0.38 tolerated(0.1) benign(0.007) TCGA-AA-A010-01 19 59012040 59012040 C T SLC27A5 Missense_Mutation p.A406T 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 19 59073301 59073301 T C MZF1 3'UTR 0.53 TCGA-AA-A010-01 19 59073931 59073931 G A MZF1 Silent p.C571C 0.45 TCGA-AA-A010-01 19 5923291 5923291 C T RANBP3 Missense_Mutation p.A375T 0.41 deleterious(0.02) possibly_damaging(0.842) TCGA-AA-A010-01 19 6190668 6190668 A C ACSBG2 Nonstop_Mutation p.*667Cext*3 0.33 TCGA-AA-A010-01 19 6222625 6222625 C T MLLT1 Missense_Mutation p.R206H 0.35 tolerated(0.14) probably_damaging(0.992) TCGA-AA-A010-01 19 6495415 6495415 C T TUBB4A Silent p.A365A 0.40 TCGA-AA-A010-01 19 6535039 6535039 G A TNFSF9 Missense_Mutation p.E243K 0.40 tolerated(0.52) benign(0.003) TCGA-AA-A010-01 19 6680227 6680227 G T C3 Nonsense_Mutation p.Y1466* 0.31 TCGA-AA-A010-01 19 6686914 6686914 C A C3 Splice_Site p.X1164_splice 0.37 TCGA-AA-A010-01 19 6690655 6690655 G A C3 Silent p.C1158C 0.37 TCGA-AA-A010-01 19 6707155 6707155 T G C3 Missense_Mutation p.D726A 0.33 deleterious(0.01) benign(0.208) TCGA-AA-A010-01 19 6709782 6709782 C A C3 Missense_Mutation p.E586D 0.39 deleterious(0.01) possibly_damaging(0.67) TCGA-AA-A010-01 19 6736634 6736634 C T GPR108 Missense_Mutation p.G70D 0.42 tolerated(0.33) benign(0.001) TCGA-AA-A010-01 19 6754673 6754673 G A SH2D3A Missense_Mutation p.L351F 0.34 deleterious(0.03) benign(0.093) TCGA-AA-A010-01 19 6836519 6836519 G A VAV1 Silent p.R618R 0.40 TCGA-AA-A010-01 19 6852999 6852999 G T VAV1 Missense_Mutation p.Q747H 0.42 tolerated(0.41) benign(0.017) TCGA-AA-A010-01 19 7128909 7128909 G T INSR Missense_Mutation p.L967I 0.35 tolerated(0.4) benign(0.033) TCGA-AA-A010-01 19 7166391 7166391 G A INSR Silent p.F545F 0.49 TCGA-AA-A010-01 19 746785 746785 C T PALM Missense_Mutation p.H379Y 0.25 deleterious(0) benign(0.233) TCGA-AA-A010-01 19 7606889 7606889 A G PNPLA6 Silent p.T405T 0.24 TCGA-AA-A010-01 19 7623982 7623982 G A PNPLA6 Missense_Mutation p.R1225H 0.40 deleterious(0.01) probably_damaging(0.977) TCGA-AA-A010-01 19 7794161 7794161 C A CLEC4G 3'UTR 0.53 TCGA-AA-A010-01 19 7797028 7797028 T C CLEC4G 5'UTR 0.42 TCGA-AA-A010-01 19 7960608 7960608 C A LRRC8E Silent p.V40V 0.35 TCGA-AA-A010-01 19 7964132 7964132 G A LRRC8E Missense_Mutation p.R242H 0.38 deleterious(0.04) probably_damaging(0.991) TCGA-AA-A010-01 19 7964496 7964496 C T LRRC8E Silent p.F363F 0.43 TCGA-AA-A010-01 19 7998827 7998827 C T TIMM44 Missense_Mutation p.R202Q 0.45 tolerated(0.23) benign(0.029) TCGA-AA-A010-01 19 8032484 8032484 G A ELAVL1 Silent p.F207F 0.36 TCGA-AA-A010-01 19 8136996 8136996 T C FBN3 Missense_Mutation p.E2675G 0.39 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 19 8152975 8152975 G T FBN3 Silent p.G2155G 0.37 TCGA-AA-A010-01 19 8175808 8175808 G A FBN3 Silent p.S1418S 0.42 TCGA-AA-A010-01 19 8212371 8212371 T C FBN3 5'UTR 0.45 TCGA-AA-A010-01 19 8321862 8321862 C T CERS4 Silent p.F214F 0.39 TCGA-AA-A010-01 19 8464848 8464848 T G RAB11B Missense_Mutation p.F48V 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 19 855986 855986 A T ELANE Missense_Mutation p.N209I 0.35 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 19 8562678 8562678 C T PRAM1 Missense_Mutation p.D516N 0.42 deleterious(0.02) benign(0.134) TCGA-AA-A010-01 19 8612995 8612995 G A MYO1F Silent p.F398F 0.36 TCGA-AA-A010-01 19 8651510 8651510 G A ADAMTS10 Nonsense_Mutation p.R779* 0.32 TCGA-AA-A010-01 19 8654827 8654827 A T ADAMTS10 Missense_Mutation p.F616I 0.30 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 19 8994424 8994424 T C MUC16 Missense_Mutation p.Q13823R 0.40 probably_damaging(0.99) TCGA-AA-A010-01 19 8995656 8995656 C T MUC16 Missense_Mutation p.A13778T 0.18 possibly_damaging(0.784) TCGA-AA-A010-01 19 8995677 8995677 G T MUC16 Missense_Mutation p.L13771M 0.21 probably_damaging(0.991) TCGA-AA-A010-01 19 9038096 9038096 G T MUC16 Silent p.S12060S 0.35 TCGA-AA-A010-01 19 9046860 9046860 T C MUC16 Missense_Mutation p.T11591A 0.38 benign(0.072) TCGA-AA-A010-01 19 9046998 9046998 G T MUC16 Missense_Mutation p.L11545M 0.42 benign(0.063) TCGA-AA-A010-01 19 9047191 9047191 C T MUC16 Silent p.E11480E 0.36 TCGA-AA-A010-01 19 9050067 9050067 C T MUC16 Missense_Mutation p.E10522K 0.38 benign(0.007) TCGA-AA-A010-01 19 9056181 9056181 C T MUC16 Missense_Mutation p.R10422Q 0.33 benign(0.417) TCGA-AA-A010-01 19 9057842 9057842 C T MUC16 Silent p.P9868P 0.35 TCGA-AA-A010-01 19 9058483 9058483 T C MUC16 Missense_Mutation p.T9655A 0.40 unknown(0) TCGA-AA-A010-01 19 9059422 9059422 A G MUC16 Missense_Mutation p.S9342P 0.36 unknown(0) TCGA-AA-A010-01 19 9059881 9059881 A G MUC16 Silent p.L9189L 0.40 TCGA-AA-A010-01 19 9060517 9060517 C A MUC16 Missense_Mutation p.D8977Y 0.76 unknown(0) TCGA-AA-A010-01 19 9060590 9060590 G T MUC16 Missense_Mutation p.F8952L 0.35 unknown(0) TCGA-AA-A010-01 19 9060595 9060595 C A MUC16 Nonsense_Mutation p.E8951* 0.46 TCGA-AA-A010-01 19 9060948 9060948 C T MUC16 Missense_Mutation p.S8833N 0.39 unknown(0) TCGA-AA-A010-01 19 9061323 9061323 G T MUC16 Missense_Mutation p.S8708Y 0.39 unknown(0) TCGA-AA-A010-01 19 9061629 9061629 C T MUC16 Missense_Mutation p.R8606H 0.37 unknown(0) TCGA-AA-A010-01 19 9062923 9062923 A G MUC16 Missense_Mutation p.S8175P 0.39 unknown(0) TCGA-AA-A010-01 19 9067487 9067487 G T MUC16 Missense_Mutation p.F6653L 0.34 unknown(0) TCGA-AA-A010-01 19 9068997 9068997 G T MUC16 Missense_Mutation p.S6150Y 0.40 unknown(0) TCGA-AA-A010-01 19 9072831 9072831 A T MUC16 Missense_Mutation p.I4872N 0.34 unknown(0) TCGA-AA-A010-01 19 9077467 9077467 T C MUC16 Missense_Mutation p.T3327A 0.31 unknown(0) TCGA-AA-A010-01 19 9077775 9077775 A G MUC16 Missense_Mutation p.V3224A 0.39 unknown(0) TCGA-AA-A010-01 19 9083660 9083660 C A MUC16 Nonsense_Mutation p.E2719* 0.34 TCGA-AA-A010-01 19 9087546 9087546 G T MUC16 Silent p.T1423T 0.37 TCGA-AA-A010-01 19 9088784 9088784 C T MUC16 Missense_Mutation p.A1011T 0.44 unknown(0) TCGA-AA-A010-01 19 9213100 9213100 C T OR7G2 Missense_Mutation p.A295T 0.37 deleterious(0.02) benign(0.331) TCGA-AA-A010-01 19 9298068 9298068 G T OR7D2 3'UTR 0.30 TCGA-AA-A010-01 19 9413107 9413107 C A ZNF699 Missense_Mutation p.R41I 0.30 deleterious(0) possibly_damaging(0.603) TCGA-AA-A010-01 19 9452360 9452360 T G ZNF559 Intron 0.35 TCGA-AA-A010-01 19 9453161 9453161 G A ZNF559 Missense_Mutation p.R345Q 0.38 tolerated(0.11) possibly_damaging(0.705) TCGA-AA-A010-01 19 9577789 9577789 G A ZNF560 Missense_Mutation p.R612C 0.46 tolerated(0.09) possibly_damaging(0.722) TCGA-AA-A010-01 19 9578758 9578758 C A ZNF560 Missense_Mutation p.D289Y 0.29 deleterious(0.01) probably_damaging(0.953) TCGA-AA-A010-01 19 9584928 9584928 C A ZNF560 Missense_Mutation p.R35I 0.37 deleterious(0.03) benign(0.256) TCGA-AA-A010-01 19 9676710 9676710 C A ZNF121 Missense_Mutation p.R360I 0.35 deleterious(0.02) benign(0.101) TCGA-AA-A010-01 19 9868897 9868897 C A ZNF846 Nonsense_Mutation p.E286* 0.36 TCGA-AA-A010-01 19 9965191 9965191 C T OLFM2 Missense_Mutation p.V346M 0.31 deleterious(0.05) possibly_damaging(0.788) TCGA-AA-A010-01 1 100133242 100133242 C T PALMD Silent p.S57S 0.38 TCGA-AA-A010-01 1 100159666 100159666 C T PALMD 3'UTR 0.36 TCGA-AA-A010-01 1 100346935 100346935 G A AGL Missense_Mutation p.G697S 0.39 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 1 100387217 100387217 G T AGL 3'UTR 0.44 TCGA-AA-A010-01 1 100606424 100606424 A G TRMT13 Missense_Mutation p.N173S 0.41 deleterious(0.02) probably_damaging(0.911) TCGA-AA-A010-01 1 10075848 10075848 C A RBP7 Missense_Mutation p.F121L 0.31 tolerated(0.64) benign(0.191) TCGA-AA-A010-01 1 101006998 101006998 A C GPR88 3'UTR 0.26 TCGA-AA-A010-01 1 101203905 101203905 T A VCAM1 3'UTR 0.30 TCGA-AA-A010-01 1 10163147 10163147 G T UBE4B Nonsense_Mutation p.E193* 0.36 TCGA-AA-A010-01 1 101705772 101705772 C T S1PR1 3'UTR 0.39 TCGA-AA-A010-01 1 101706401 101706401 C A S1PR1 3'UTR 0.43 TCGA-AA-A010-01 1 103343614 103343614 C T COL11A1 Silent p.K1794K 0.17 TCGA-AA-A010-01 1 103343674 103343674 T G COL11A1 Missense_Mutation p.K1774N 0.20 unknown(0) TCGA-AA-A010-01 1 103343686 103343686 G T COL11A1 Silent p.I1770I 0.30 TCGA-AA-A010-01 1 103347269 103347269 A C COL11A1 Missense_Mutation p.F1675C 0.32 unknown(0) TCGA-AA-A010-01 1 103484405 103484405 A C COL11A1 Missense_Mutation p.V440G 0.39 probably_damaging(0.978) TCGA-AA-A010-01 1 103491087 103491087 C T COL11A1 Missense_Mutation p.G327E 0.32 benign(0.168) TCGA-AA-A010-01 1 103491770 103491770 A C COL11A1 Splice_Site p.X299_splice 0.37 TCGA-AA-A010-01 1 103573780 103573780 C T COL11A1 5'UTR 0.32 TCGA-AA-A010-01 1 104162230 104162230 G A AMY2A Missense_Mutation p.V190M 0.26 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 1 104163174 104163174 T G AMY2A Missense_Mutation p.V249G 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 10423350 10423350 C A KIF1B Silent p.V1392V 0.34 TCGA-AA-A010-01 1 10473223 10473223 G T PGD Missense_Mutation p.K253N 0.42 deleterious(0.04) benign(0.259) TCGA-AA-A010-01 1 107599880 107599880 C T PRMT6 Silent p.G181G 0.33 TCGA-AA-A010-01 1 108145748 108145748 C T VAV3 Missense_Mutation p.E685K 0.54 tolerated(0.65) probably_damaging(0.921) TCGA-AA-A010-01 1 108160213 108160213 A C VAV3 Missense_Mutation p.S652R 0.34 tolerated(0.11) possibly_damaging(0.809) TCGA-AA-A010-01 1 108417636 108417636 G T VAV3 Missense_Mutation p.L70I 0.53 deleterious(0.01) possibly_damaging(0.775) TCGA-AA-A010-01 1 108735337 108735337 C T SLC25A24 Intron 0.26 TCGA-AA-A010-01 1 108742705 108742705 T C SLC25A24 Missense_Mutation p.E19G 0.37 deleterious(0.05) benign(0.003) TCGA-AA-A010-01 1 108918880 108918880 C T NBPF6 Intron 0.37 TCGA-AA-A010-01 1 109445747 109445747 G T GPSM2 Splice_Site p.X318_splice 0.39 TCGA-AA-A010-01 1 109482715 109482715 G T CLCC1 Nonsense_Mutation p.Y282* 0.35 TCGA-AA-A010-01 1 109649259 109649259 C A C1orf194 Nonsense_Mutation p.E101* 0.38 TCGA-AA-A010-01 1 109655358 109655358 C T C1orf194 Intron 0.39 TCGA-AA-A010-01 1 109716354 109716354 T C KIAA1324 Missense_Mutation p.Y283H 0.33 tolerated(0.11) benign(0.043) TCGA-AA-A010-01 1 109778616 109778616 C T SARS Silent p.Y329Y 0.31 TCGA-AA-A010-01 1 109780676 109780676 C T SARS 3'UTR 0.44 TCGA-AA-A010-01 1 109812412 109812412 C T CELSR2 Silent p.F2359F 0.43 TCGA-AA-A010-01 1 109952611 109952611 T G PSMA5 Missense_Mutation p.K196T 0.35 tolerated(0.62) benign(0.02) TCGA-AA-A010-01 1 110022017 110022017 C A SYPL2 Missense_Mutation p.N222K 0.37 deleterious(0) benign(0.334) TCGA-AA-A010-01 1 110022282 110022282 C A SYPL2 3'UTR 0.52 TCGA-AA-A010-01 1 110030320 110030320 C T ATXN7L2 Silent p.I198I 0.37 TCGA-AA-A010-01 1 110031545 110031545 C T ATXN7L2 Missense_Mutation p.A287V 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A010-01 1 110213937 110213937 C G GSTM2 Missense_Mutation p.A130G 0.32 tolerated(1) benign(0) TCGA-AA-A010-01 1 110217584 110217584 C A GSTM2 3'UTR 0.38 TCGA-AA-A010-01 1 110260175 110260175 G T GSTM5 3'UTR 0.21 TCGA-AA-A010-01 1 110293371 110293371 G A EPS8L3 Missense_Mutation p.R562C 0.43 deleterious(0.01) possibly_damaging(0.685) TCGA-AA-A010-01 1 110589357 110589357 G A STRIP1 Missense_Mutation p.R491H 0.35 deleterious(0) possibly_damaging(0.621) TCGA-AA-A010-01 1 110734665 110734665 C A SLC6A17 Silent p.G312G 0.40 TCGA-AA-A010-01 1 110765855 110765855 C A KCNC4 Silent p.I316I 0.29 TCGA-AA-A010-01 1 110765960 110765960 C T KCNC4 Silent p.F351F 0.32 TCGA-AA-A010-01 1 110882416 110882416 G A RBM15 Missense_Mutation p.S130N 0.44 tolerated_low_confidence(0.49) possibly_damaging(0.483) TCGA-AA-A010-01 1 110888192 110888192 G T RBM15 Missense_Mutation p.E965D 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 1 111060912 111060912 G T KCNA10 Silent p.I166I 0.47 TCGA-AA-A010-01 1 111061334 111061334 G A KCNA10 Missense_Mutation p.P26S 0.43 tolerated_low_confidence(0.7) benign(0.003) TCGA-AA-A010-01 1 111215836 111215836 G A KCNA3 Silent p.I532I 0.41 TCGA-AA-A010-01 1 111216508 111216508 G A KCNA3 Silent p.F308F 0.42 TCGA-AA-A010-01 1 111435077 111435077 C T CD53 Silent p.I58I 0.36 TCGA-AA-A010-01 1 111770310 111770310 A C CHI3L2 5'UTR 0.31 TCGA-AA-A010-01 1 111773482 111773482 C T CHI3L2 Silent p.F63F 0.35 TCGA-AA-A010-01 1 111773879 111773879 C A CHI3L2 Missense_Mutation p.L98I 0.42 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 1 111773915 111773915 G T CHI3L2 Missense_Mutation p.G110W 0.33 deleterious(0) probably_damaging(0.949) TCGA-AA-A010-01 1 111777549 111777549 C A CHI3L2 Missense_Mutation p.S117Y 0.39 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 1 111783975 111783975 G T CHI3L2 Missense_Mutation p.K315N 0.28 deleterious(0.05) benign(0.008) TCGA-AA-A010-01 1 111824324 111824324 C T CHIAP2 RNA 0.32 TCGA-AA-A010-01 1 111854874 111854874 C T CHIA Missense_Mutation p.R40C 0.33 deleterious(0.03) possibly_damaging(0.778) TCGA-AA-A010-01 1 111862985 111862985 A G CHIA Missense_Mutation p.N443S 0.42 tolerated(0.12) benign(0.305) TCGA-AA-A010-01 1 111889532 111889532 A G PIFO Missense_Mutation p.D7G 0.39 tolerated(0.1) benign(0.009) TCGA-AA-A010-01 1 111985955 111985955 G T WDR77 Silent p.V227V 0.36 TCGA-AA-A010-01 1 112305322 112305322 G A DDX20 Silent p.E376E 0.34 TCGA-AA-A010-01 1 112308673 112308673 G A DDX20 Missense_Mutation p.E543K 0.39 tolerated(0.46) benign(0.006) TCGA-AA-A010-01 1 112323370 112323370 G A KCND3 Missense_Mutation p.S438L 0.43 tolerated(0.24) benign(0.32) TCGA-AA-A010-01 1 112525106 112525106 C A KCND3 Missense_Mutation p.E81D 0.44 deleterious(0.01) benign(0.284) TCGA-AA-A010-01 1 11293466 11293466 C A MTOR Nonsense_Mutation p.E804* 0.36 TCGA-AA-A010-01 1 113057648 113057648 G A WNT2B Missense_Mutation p.R112H 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-AA-A010-01 1 113098529 113098529 C A ST7L Nonsense_Mutation p.E453* 0.46 TCGA-AA-A010-01 1 113235395 113235395 G T MOV10 Missense_Mutation p.E328D 0.33 tolerated(0.26) benign(0.002) TCGA-AA-A010-01 1 113244114 113244114 C A RHOC 3'UTR 0.43 TCGA-AA-A010-01 1 113245235 113245235 C T RHOC Missense_Mutation p.D120N 0.42 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 1 11333877 11333877 G A UBIAD1 Missense_Mutation p.A97T 0.31 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 1 113666754 113666754 A G LRIG2 3'UTR 0.34 TCGA-AA-A010-01 1 1141811 1141811 C T TNFRSF18 Silent p.A47A 0.49 TCGA-AA-A010-01 1 114226599 114226599 T G MAGI3 Missense_Mutation p.V1470G 0.35 tolerated_low_confidence(0.05) benign(0.011) TCGA-AA-A010-01 1 114248585 114248585 T G PHTF1 Missense_Mutation p.N533T 0.29 tolerated(0.91) benign(0.069) TCGA-AA-A010-01 1 114300338 114300338 C T PHTF1 Missense_Mutation p.E29K 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 114340193 114340193 C A RSBN1 Missense_Mutation p.R390I 0.45 deleterious(0.01) possibly_damaging(0.808) TCGA-AA-A010-01 1 114354682 114354682 C T RSBN1 Missense_Mutation p.S118N 0.37 deleterious_low_confidence(0.01) benign(0.383) TCGA-AA-A010-01 1 114380628 114380628 C A PTPN22 Missense_Mutation p.S465I 0.38 tolerated(0.28) benign(0.002) TCGA-AA-A010-01 1 114438993 114438993 G A AP4B1 Missense_Mutation p.S466L 0.40 tolerated(0.12) benign(0.23) TCGA-AA-A010-01 1 114506017 114506017 T C HIPK1 Silent p.C704C 0.39 TCGA-AA-A010-01 1 114511225 114511225 G A HIPK1 Missense_Mutation p.R909Q 0.33 tolerated(0.14) benign(0.043) TCGA-AA-A010-01 1 114948207 114948207 G A TRIM33 Nonsense_Mutation p.R865* 0.31 TCGA-AA-A010-01 1 115128217 115128217 G T DENND2C 3'UTR 0.37 TCGA-AA-A010-01 1 115165712 115165712 T C DENND2C Missense_Mutation p.K318E 0.50 deleterious(0.03) possibly_damaging(0.899) TCGA-AA-A010-01 1 115220605 115220605 C A AMPD1 Missense_Mutation p.A417S 0.37 tolerated(0.11) probably_damaging(0.999) TCGA-AA-A010-01 1 115273024 115273024 C A CSDE1 Missense_Mutation p.R450I 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 1 115275230 115275230 C A CSDE1 Nonsense_Mutation p.E395* 0.33 TCGA-AA-A010-01 1 115428221 115428221 G T SYCP1 Missense_Mutation p.D326Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 1 115466095 115466095 G T SYCP1 Nonsense_Mutation p.E582* 0.34 TCGA-AA-A010-01 1 115487028 115487028 G T SYCP1 Missense_Mutation p.Q665H 0.35 deleterious(0.02) probably_damaging(0.977) TCGA-AA-A010-01 1 11561952 11561952 C T PTCHD2 Silent p.I301I 0.28 TCGA-AA-A010-01 1 1158736 1158736 A C SDF4 Silent p.G155G 0.41 TCGA-AA-A010-01 1 116383146 116383146 T - NHLH2 5'UTR 0.29 TCGA-AA-A010-01 1 1163906 1163906 A C SDF4 Missense_Mutation p.F90V 0.34 deleterious(0.03) possibly_damaging(0.804) TCGA-AA-A010-01 1 1169248 1169248 T C B3GALT6 3'UTR 0.38 TCGA-AA-A010-01 1 117087198 117087198 T C CD58 Missense_Mutation p.I33M 0.39 tolerated(0.18) benign(0.188) TCGA-AA-A010-01 1 117297258 117297258 G T CD2 Missense_Mutation p.V23F 0.35 tolerated(0.06) benign(0.169) TCGA-AA-A010-01 1 11734738 11734738 G A MAD2L2 3'UTR 0.33 TCGA-AA-A010-01 1 117556033 117556033 G T CD101 Missense_Mutation p.D283Y 0.38 deleterious(0) probably_damaging(0.928) TCGA-AA-A010-01 1 117560946 117560946 G A CD101 Missense_Mutation p.R594Q 0.27 tolerated(0.41) benign(0.007) TCGA-AA-A010-01 1 117617695 117617695 C T TTF2 Silent p.F163F 0.35 TCGA-AA-A010-01 1 117617822 117617822 G A TTF2 Missense_Mutation p.A206T 0.33 tolerated(0.31) benign(0.024) TCGA-AA-A010-01 1 117699271 117699271 C A VTCN1 Missense_Mutation p.D124Y 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 117984940 117984940 T G MAN1A2 Missense_Mutation p.L315V 0.34 tolerated(0.14) benign(0.039) TCGA-AA-A010-01 1 118168846 118168846 T C FAM46C 3'UTR 0.37 TCGA-AA-A010-01 1 118170073 118170073 T C FAM46C 3'UTR 0.31 TCGA-AA-A010-01 1 118454616 118454616 G A GDAP2 Missense_Mutation p.R187C 0.39 deleterious(0) probably_damaging(0.915) TCGA-AA-A010-01 1 118499758 118499758 G A WDR3 Missense_Mutation p.E841K 0.36 tolerated(0.75) benign(0.129) TCGA-AA-A010-01 1 118596691 118596691 C A SPAG17 Missense_Mutation p.E916D 0.34 tolerated(0.23) benign(0.035) TCGA-AA-A010-01 1 118635863 118635863 C A SPAG17 Missense_Mutation p.Q363H 0.39 tolerated(0.19) benign(0.023) TCGA-AA-A010-01 1 11906022 11906022 C A NPPA 3'UTR 0.43 TCGA-AA-A010-01 1 119575514 119575514 C A WARS2 3'UTR 0.39 TCGA-AA-A010-01 1 11985483 11985483 T C KIAA2013 Missense_Mutation p.N271S 0.34 tolerated(0.79) benign(0.142) TCGA-AA-A010-01 1 120050009 120050009 T A HSD3B1 Intron 0.22 TCGA-AA-A010-01 1 120168685 120168685 C A ZNF697 Missense_Mutation p.Q13H 0.37 deleterious_low_confidence(0) benign(0.347) TCGA-AA-A010-01 1 120336918 120336918 C A REG4 3'UTR 0.39 TCGA-AA-A010-01 1 120438330 120438330 G T ADAM30 Silent p.L210L 0.35 TCGA-AA-A010-01 1 120438693 120438693 G A ADAM30 Silent p.R89R 0.45 TCGA-AA-A010-01 1 120462193 120462193 G A NOTCH2 Silent p.S1841S 0.35 TCGA-AA-A010-01 1 120483183 120483183 A C NOTCH2 Missense_Mutation p.C1060G 0.37 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 1 120927316 120927316 C A FCGR1B Nonsense_Mutation p.E222* 0.30 TCGA-AA-A010-01 1 12202748 12202748 C A TNFRSF8 3'UTR 0.28 TCGA-AA-A010-01 1 12254028 12254028 G T TNFRSF1B Silent p.V268V 0.34 TCGA-AA-A010-01 1 1230858 1230858 G A ACAP3 Silent p.F594F 0.34 TCGA-AA-A010-01 1 12337663 12337663 G A VPS13D Missense_Mutation p.V1340I 0.47 possibly_damaging(0.702) TCGA-AA-A010-01 1 1239521 1239521 G A ACAP3 Missense_Mutation p.A17V 0.37 deleterious(0.03) benign(0.109) TCGA-AA-A010-01 1 12416013 12416013 A C VPS13D Missense_Mutation p.Q3246P 0.34 possibly_damaging(0.629) TCGA-AA-A010-01 1 12433907 12433907 A G VPS13D Silent p.K3637K 0.42 TCGA-AA-A010-01 1 12639429 12639429 G T DHRS3 Silent p.I117I 0.44 TCGA-AA-A010-01 1 1271803 1271803 C A DVL1 Nonsense_Mutation p.E578* 0.37 TCGA-AA-A010-01 1 12856055 12856055 G A PRAMEF1 Silent p.R445R 0.08 TCGA-AA-A010-01 1 12908113 12908113 A G HNRNPCL1 Silent p.D10D 0.17 TCGA-AA-A010-01 1 12918906 12918906 G A PRAMEF2 Silent p.G14G 0.38 TCGA-AA-A010-01 1 13036638 13036638 G A PRAMEF22 Missense_Mutation p.R237H 0.25 tolerated(0.2) benign(0.008) TCGA-AA-A010-01 1 13522175 13522175 C A PRAMEF21 Missense_Mutation p.S68Y 0.70 deleterious(0) possibly_damaging(0.648) TCGA-AA-A010-01 1 13669060 13669060 G A PRAMEF14 Missense_Mutation p.R424C 0.32 tolerated(0.19) benign(0.443) TCGA-AA-A010-01 1 13743050 13743050 C T PRAMEF20 Missense_Mutation p.A80V 0.80 tolerated(0.08) probably_damaging(0.999) TCGA-AA-A010-01 1 144825358 144825358 G T NBPF9 Missense_Mutation p.S436I 0.31 deleterious(0.01) unknown(0) TCGA-AA-A010-01 1 144874703 144874703 C A PDE4DIP Missense_Mutation p.K1635N 0.18 tolerated(0.06) benign(0.373) TCGA-AA-A010-01 1 144881590 144881590 C T PDE4DIP Silent p.G1202G 0.20 TCGA-AA-A010-01 1 144882565 144882565 C A PDE4DIP Nonsense_Mutation p.E1152* 0.16 TCGA-AA-A010-01 1 144892325 144892325 G T PDE4DIP Intron 0.13 TCGA-AA-A010-01 1 144916671 144916671 T G PDE4DIP Missense_Mutation p.K562Q 0.19 deleterious(0.01) benign(0.196) TCGA-AA-A010-01 1 144917575 144917575 C T PDE4DIP Missense_Mutation p.R510H 0.24 tolerated(0.91) benign(0.002) TCGA-AA-A010-01 1 144930647 144930647 C A PDE4DIP Intron 0.15 TCGA-AA-A010-01 1 144931041 144931041 C A PDE4DIP Intron 0.19 TCGA-AA-A010-01 1 144931500 144931500 C A PDE4DIP Intron 0.15 TCGA-AA-A010-01 1 144931700 144931700 C T PDE4DIP Intron 0.23 TCGA-AA-A010-01 1 145039601 145039601 C A PDE4DIP Missense_Mutation p.Q3H 0.12 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 1 145112390 145112390 A G SEC22B RNA 0.16 TCGA-AA-A010-01 1 145273434 145273434 C T NOTCH2NL Silent p.V96V 0.08 TCGA-AA-A010-01 1 145296447 145296447 G A NBPF10 Silent p.L123L 0.11 TCGA-AA-A010-01 1 145296457 145296457 C A NBPF10 Missense_Mutation p.L127I 0.24 probably_damaging(0.975) TCGA-AA-A010-01 1 145368510 145368510 G A NBPF10 Silent p.S3496S 0.11 TCGA-AA-A010-01 1 145417274 145417274 G T HFE2 3'UTR 0.34 TCGA-AA-A010-01 1 145417513 145417513 C A HFE2 3'UTR 0.38 TCGA-AA-A010-01 1 145438828 145438828 C A TXNIP Missense_Mutation p.S9Y 0.38 deleterious(0.01) benign(0.054) TCGA-AA-A010-01 1 145474701 145474701 C T ANKRD34A Missense_Mutation p.A458V 0.43 tolerated(0.39) benign(0.058) TCGA-AA-A010-01 1 145522863 145522863 T C PEX11B Missense_Mutation p.S242P 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 145538263 145538263 G T ITGA10 Missense_Mutation p.Q930H 0.36 tolerated(0.28) benign(0.035) TCGA-AA-A010-01 1 145549270 145549270 G A ANKRD35 5'UTR 0.35 TCGA-AA-A010-01 1 145555808 145555808 G A ANKRD35 Silent p.S52S 0.34 TCGA-AA-A010-01 1 145561856 145561856 G T ANKRD35 Missense_Mutation p.R515I 0.36 deleterious(0.01) possibly_damaging(0.766) TCGA-AA-A010-01 1 145562174 145562174 G T ANKRD35 Missense_Mutation p.R621I 0.39 deleterious(0) possibly_damaging(0.766) TCGA-AA-A010-01 1 145562584 145562584 C T ANKRD35 Missense_Mutation p.R758W 0.37 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 1 145704250 145704250 A C CD160 Missense_Mutation p.F56C 0.41 tolerated(0.05) benign(0.386) TCGA-AA-A010-01 1 146634020 146634020 G T PRKAB2 Missense_Mutation p.S224Y 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 1 146696716 146696716 G T FMO5 Intron 0.36 TCGA-AA-A010-01 1 147090654 147090654 G A BCL9 Silent p.P231P 0.85 TCGA-AA-A010-01 1 147091131 147091131 G T BCL9 Missense_Mutation p.Q390H 0.38 tolerated(0.64) benign(0.137) TCGA-AA-A010-01 1 147091243 147091243 G T BCL9 Missense_Mutation p.A428S 0.33 tolerated(0.71) benign(0.034) TCGA-AA-A010-01 1 148933350 148933350 G T RP11-14N7.2 RNA 0.17 TCGA-AA-A010-01 1 149877298 149877298 G T SV2A Intron 0.36 TCGA-AA-A010-01 1 149879720 149879720 C T SV2A Missense_Mutation p.R473H 0.38 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A010-01 1 149905806 149905806 C T MTMR11 Missense_Mutation p.R238Q 0.33 tolerated(0.06) probably_damaging(0.915) TCGA-AA-A010-01 1 149943156 149943156 C T OTUD7B Missense_Mutation p.A37T 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 1 150123206 150123206 T C PLEKHO1 Silent p.Y45Y 0.41 TCGA-AA-A010-01 1 150208208 150208208 T G ANP32E 5'UTR 0.39 TCGA-AA-A010-01 1 150234004 150234004 G A CA14 Missense_Mutation p.E75K 0.40 tolerated(0.3) benign(0.029) TCGA-AA-A010-01 1 150238549 150238549 C T APH1A Missense_Mutation p.R260H 0.35 deleterious_low_confidence(0.02) benign(0.08) TCGA-AA-A010-01 1 150476813 150476813 T G TARS2 Missense_Mutation p.I540M 0.32 deleterious(0) probably_damaging(0.957) TCGA-AA-A010-01 1 150689695 150689695 G A HORMAD1 Missense_Mutation p.L33F 0.36 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 1 151262964 151262964 T C ZNF687 Missense_Mutation p.V1045A 0.36 deleterious(0) possibly_damaging(0.55) TCGA-AA-A010-01 1 151288138 151288138 G A PI4KB Missense_Mutation p.R286C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 151314452 151314452 T G RFX5 3'UTR 0.35 TCGA-AA-A010-01 1 151490979 151490979 T G CGN Intron 0.45 TCGA-AA-A010-01 1 151506561 151506561 G T CGN Missense_Mutation p.E951D 0.39 tolerated(0.15) benign(0.045) TCGA-AA-A010-01 1 152057614 152057614 G T TCHHL1 Silent p.V848V 0.37 TCGA-AA-A010-01 1 152080328 152080328 G A TCHH Missense_Mutation p.R1789C 0.31 unknown(0) TCGA-AA-A010-01 1 152082362 152082362 G A TCHH Missense_Mutation p.R1111W 0.39 unknown(0) TCGA-AA-A010-01 1 152127079 152127079 G T RPTN 3'UTR 0.39 TCGA-AA-A010-01 1 152188421 152188421 G A HRNR Missense_Mutation p.S1895F 0.05 unknown(0) TCGA-AA-A010-01 1 152281525 152281525 G A FLG Missense_Mutation p.A1946V 0.39 possibly_damaging(0.483) TCGA-AA-A010-01 1 152488407 152488407 A G CRCT1 3'UTR 0.32 TCGA-AA-A010-01 1 152733472 152733472 C A KPRP Missense_Mutation p.P470T 0.34 tolerated_low_confidence(0.1) benign(0.031) TCGA-AA-A010-01 1 153066099 153066099 C T SPRR2E Silent p.Q43Q 0.34 TCGA-AA-A010-01 1 153312870 153312870 C T PGLYRP4 Missense_Mutation p.D271N 0.38 deleterious(0.03) probably_damaging(1) TCGA-AA-A010-01 1 153410766 153410766 C A S100A7L2 Missense_Mutation p.V25F 0.39 deleterious(0) benign(0.117) TCGA-AA-A010-01 1 153533998 153533998 C T S100A2 Missense_Mutation p.D71N 0.44 tolerated(0.11) probably_damaging(0.931) TCGA-AA-A010-01 1 153587343 153587343 G T S100A14 3'UTR 0.33 TCGA-AA-A010-01 1 153746191 153746191 C T INTS3 3'UTR 0.40 TCGA-AA-A010-01 1 153746555 153746555 C A INTS3 3'UTR 0.31 TCGA-AA-A010-01 1 153913733 153913733 C G DENND4B Missense_Mutation p.Q385H 0.34 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 1 153914562 153914562 C T DENND4B Missense_Mutation p.E280K 0.49 deleterious(0.01) benign(0.079) TCGA-AA-A010-01 1 153932532 153932532 G A SLC39A1 3'UTR 0.33 TCGA-AA-A010-01 1 153955297 153955297 G T RAB13 Intron 0.33 TCGA-AA-A010-01 1 154002404 154002404 A C NUP210L Missense_Mutation p.L1275V 0.42 tolerated(0.5) benign(0.003) TCGA-AA-A010-01 1 154029380 154029380 G A NUP210L Nonsense_Mutation p.R1051* 0.40 TCGA-AA-A010-01 1 154091161 154091161 G A NUP210L Missense_Mutation p.R484C 0.35 deleterious(0) possibly_damaging(0.762) TCGA-AA-A010-01 1 154099828 154099828 C A NUP210L Missense_Mutation p.D382Y 0.34 deleterious(0) possibly_damaging(0.691) TCGA-AA-A010-01 1 154173026 154173026 G T C1orf189 Missense_Mutation p.A38E 0.39 deleterious(0.01) benign(0.005) TCGA-AA-A010-01 1 154246353 154246353 C A HAX1 Silent p.I140I 0.35 TCGA-AA-A010-01 1 154295766 154295766 G T AQP10 Missense_Mutation p.K140N 0.40 tolerated(1) benign(0.038) TCGA-AA-A010-01 1 154296104 154296104 A G AQP10 Missense_Mutation p.I177V 0.35 tolerated(0.06) benign(0.256) TCGA-AA-A010-01 1 154302889 154302889 C T ATP8B2 Missense_Mutation p.R50W 0.43 deleterious(0) benign(0.35) TCGA-AA-A010-01 1 154310117 154310117 G T ATP8B2 Intron 0.39 TCGA-AA-A010-01 1 154456738 154456738 C T SHE Missense_Mutation p.A459T 0.38 tolerated(0.06) possibly_damaging(0.896) TCGA-AA-A010-01 1 154527221 154527221 T G UBE2Q1 Missense_Mutation p.E193A 0.38 deleterious(0.03) benign(0.058) TCGA-AA-A010-01 1 154842372 154842372 A G KCNN3 Silent p.C23C 0.39 TCGA-AA-A010-01 1 154923779 154923779 C T PBXIP1 Missense_Mutation p.G113D 0.33 tolerated(0.55) benign(0.009) TCGA-AA-A010-01 1 154931597 154931597 C T PYGO2 Silent p.P293P 0.33 TCGA-AA-A010-01 1 154998866 154998866 C T DCST2 Missense_Mutation p.G508D 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 155026884 155026884 C A ADAM15 Missense_Mutation p.L172I 0.40 tolerated(0.1) benign(0.046) TCGA-AA-A010-01 1 155057690 155057690 G T EFNA3 Missense_Mutation p.E84D 0.41 deleterious(0) benign(0.045) TCGA-AA-A010-01 1 155160038 155160038 A G MUC1 Missense_Mutation p.F366L 0.51 tolerated(0.17) benign(0.089) TCGA-AA-A010-01 1 155177652 155177652 G A THBS3 Missense_Mutation p.L6F 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.587) TCGA-AA-A010-01 1 155186671 155186671 C A MTX1 3'Flank 0.34 TCGA-AA-A010-01 1 155448744 155448744 C T ASH1L Missense_Mutation p.R1306Q 0.43 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A010-01 1 155450884 155450884 C T ASH1L Missense_Mutation p.E593K 0.32 deleterious_low_confidence(0.02) benign(0.248) TCGA-AA-A010-01 1 155730282 155730282 C A GON4L Missense_Mutation p.D1688Y 0.41 deleterious(0) possibly_damaging(0.452) TCGA-AA-A010-01 1 155735542 155735542 G A GON4L Missense_Mutation p.A1241V 0.38 tolerated_low_confidence(0.1) probably_damaging(0.98) TCGA-AA-A010-01 1 156031099 156031099 C A RAB25 5'UTR 0.37 TCGA-AA-A010-01 1 156206122 156206122 G T PMF1 Intron 0.37 TCGA-AA-A010-01 1 156221249 156221249 C A SMG5 Nonsense_Mutation p.E925* 0.35 TCGA-AA-A010-01 1 156268429 156268429 C T VHLL 3'UTR 0.41 TCGA-AA-A010-01 1 156268988 156268988 G A VHLL 5'UTR 0.37 TCGA-AA-A010-01 1 156354684 156354684 A G RHBG 3'UTR 0.37 TCGA-AA-A010-01 1 156374421 156374421 G A C1orf61 Intron 0.28 TCGA-AA-A010-01 1 156376948 156376948 A C C1orf61 Missense_Mutation p.F116C 0.45 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-AA-A010-01 1 15639614 15639614 G T FHAD1 Missense_Mutation p.K73N 0.38 tolerated(0.1) benign(0.349) TCGA-AA-A010-01 1 156497825 156497825 C T IQGAP3 Silent p.T1567T 0.29 TCGA-AA-A010-01 1 156507067 156507067 C T IQGAP3 Missense_Mutation p.E1110K 0.48 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 1 156563561 156563561 A C APOA1BP Intron 0.62 TCGA-AA-A010-01 1 156639392 156639392 C T NES Missense_Mutation p.A1530T 0.41 tolerated(0.14) benign(0.007) TCGA-AA-A010-01 1 156641488 156641488 G T NES Missense_Mutation p.S831Y 0.38 deleterious(0.01) possibly_damaging(0.59) TCGA-AA-A010-01 1 156641611 156641611 G T NES Missense_Mutation p.S790Y 0.36 tolerated(0.05) benign(0.245) TCGA-AA-A010-01 1 15665983 15665983 C A RP3-467K16.2 Intron 0.34 TCGA-AA-A010-01 1 156785620 156785620 G A SH2D2A Intron 0.31 TCGA-AA-A010-01 1 156815452 156815452 C A INSRR Missense_Mutation p.K711N 0.41 deleterious(0.01) possibly_damaging(0.745) TCGA-AA-A010-01 1 156845888 156845888 G A NTRK1 Silent p.K506K 0.32 TCGA-AA-A010-01 1 156901765 156901765 G T LRRC71 Missense_Mutation p.D463Y 0.43 deleterious(0) possibly_damaging(0.759) TCGA-AA-A010-01 1 156905934 156905934 G A ARHGEF11 Intron 0.38 TCGA-AA-A010-01 1 156906687 156906687 G T ARHGEF11 Silent p.G1517G 0.47 TCGA-AA-A010-01 1 15692390 15692390 G T FHAD1 Missense_Mutation p.D252Y 0.35 deleterious(0) possibly_damaging(0.526) TCGA-AA-A010-01 1 157490932 157490932 G A FCRL5 Missense_Mutation p.S797L 0.36 tolerated(0.09) possibly_damaging(0.532) TCGA-AA-A010-01 1 157646458 157646458 G T FCRL3 3'UTR 0.32 TCGA-AA-A010-01 1 157666943 157666943 C A FCRL3 Missense_Mutation p.Q277H 0.43 tolerated(0.1) probably_damaging(0.992) TCGA-AA-A010-01 1 157803205 157803205 G A CD5L Silent p.N272N 0.36 TCGA-AA-A010-01 1 157805646 157805646 C A CD5L Missense_Mutation p.D119Y 0.33 deleterious(0.05) benign(0.257) TCGA-AA-A010-01 1 158057572 158057572 A G KIRREL Missense_Mutation p.E230G 0.37 deleterious(0) benign(0.375) TCGA-AA-A010-01 1 158057859 158057859 T G KIRREL Missense_Mutation p.D277E 0.44 deleterious(0) probably_damaging(0.975) TCGA-AA-A010-01 1 158152837 158152837 G T CD1D Missense_Mutation p.E259D 0.33 tolerated(0.28) benign(0.124) TCGA-AA-A010-01 1 158154124 158154124 G T CD1D 3'UTR 0.33 TCGA-AA-A010-01 1 15819570 15819570 C A CASP9 Intron 0.44 TCGA-AA-A010-01 1 158449911 158449911 T G OR10R2 Missense_Mutation p.F82V 0.40 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 1 158449937 158449937 G T OR10R2 Missense_Mutation p.E90D 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 1 158517258 158517258 G A OR6Y1 Missense_Mutation p.A213V 0.35 tolerated(0.45) benign(0.019) TCGA-AA-A010-01 1 158532648 158532648 A G OR6P1 Silent p.V249V 0.34 TCGA-AA-A010-01 1 158584058 158584058 A C SPTA1 Missense_Mutation p.F2276C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 158585177 158585177 A G SPTA1 Missense_Mutation p.I2206T 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 158622424 158622424 G T SPTA1 Silent p.R1070R 0.45 TCGA-AA-A010-01 1 15862973 15862973 C A DNAJC16 Missense_Mutation p.L80I 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 1 158632555 158632555 C A SPTA1 Missense_Mutation p.D801Y 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 158639307 158639307 C T SPTA1 Missense_Mutation p.R575H 0.37 tolerated(0.08) probably_damaging(0.982) TCGA-AA-A010-01 1 158644400 158644400 A C SPTA1 Missense_Mutation p.I393S 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 158687736 158687736 T G OR6K3 Missense_Mutation p.N57T 0.36 tolerated(1) benign(0.009) TCGA-AA-A010-01 1 158687822 158687822 G T OR6K3 Missense_Mutation p.F28L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 1 158725362 158725362 C A OR6K6 Missense_Mutation p.L253M 0.36 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A010-01 1 158746790 158746790 G T OR6N2 Missense_Mutation p.F212L 0.36 tolerated(1) benign(0.001) TCGA-AA-A010-01 1 158815562 158815562 C T MNDA Silent p.F252F 0.39 TCGA-AA-A010-01 1 158906794 158906794 G A PYHIN1 Missense_Mutation p.D32N 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A010-01 1 158913733 158913733 T C PYHIN1 Missense_Mutation p.S386P 0.40 tolerated(0.34) possibly_damaging(0.452) TCGA-AA-A010-01 1 159015096 159015096 G T IFI16 Missense_Mutation p.D447Y 0.42 deleterious(0.02) probably_damaging(0.934) TCGA-AA-A010-01 1 159035966 159035966 C A AIM2 Nonsense_Mutation p.E184* 0.35 TCGA-AA-A010-01 1 15904213 15904213 C T AGMAT Silent p.G289G 0.33 TCGA-AA-A010-01 1 159162412 159162412 G A CADM3 Missense_Mutation p.E126K 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A010-01 1 159283458 159283458 A C OR10J3 3'Flank 0.30 TCGA-AA-A010-01 1 159558238 159558238 C T APCS Silent p.L138L 0.39 TCGA-AA-A010-01 1 159846520 159846520 C T CCDC19 Missense_Mutation p.R393H 0.39 deleterious(0.01) possibly_damaging(0.833) TCGA-AA-A010-01 1 159858216 159858216 C T CCDC19 Missense_Mutation p.A115T 0.28 tolerated(0.11) probably_damaging(0.997) TCGA-AA-A010-01 1 15987625 15987625 C A RSC1A1 Missense_Mutation p.S421Y 0.35 deleterious(0.04) probably_damaging(0.946) TCGA-AA-A010-01 1 15987678 15987678 G T RSC1A1 Nonsense_Mutation p.E439* 0.39 TCGA-AA-A010-01 1 160012217 160012217 G A KCNJ10 Missense_Mutation p.R36C 0.41 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 1 160098480 160098480 G T ATP1A2 Missense_Mutation p.K352N 0.42 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 1 160129294 160129294 C A ATP1A4 Missense_Mutation p.F252L 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-AA-A010-01 1 160144452 160144452 C T ATP1A4 Silent p.I742I 0.38 TCGA-AA-A010-01 1 160165695 160165695 G T CASQ1 Missense_Mutation p.K220N 0.41 deleterious(0) probably_damaging(0.965) TCGA-AA-A010-01 1 160168503 160168503 G A CASQ1 Missense_Mutation p.A289T 0.40 deleterious(0) possibly_damaging(0.817) TCGA-AA-A010-01 1 160263173 160263173 T C COPA Intron 0.29 TCGA-AA-A010-01 1 160263212 160263212 G T COPA Missense_Mutation p.F915L 0.48 tolerated(0.58) benign(0) TCGA-AA-A010-01 1 160342175 160342176 - TATG NHLH1 3'UTR 0.34 TCGA-AA-A010-01 1 160342202 160342202 T C NHLH1 3'UTR 0.35 TCGA-AA-A010-01 1 16051942 16051942 C A PLEKHM2 Silent p.S281S 0.39 TCGA-AA-A010-01 1 160523271 160523271 G A CD84 Silent p.F219F 0.52 TCGA-AA-A010-01 1 16057206 16057206 C T PLEKHM2 Silent p.F796F 0.42 TCGA-AA-A010-01 1 16065941 16065941 T C SLC25A34 3'UTR 0.58 TCGA-AA-A010-01 1 160719650 160719650 G A SLAMF7 Missense_Mutation p.S139N 0.36 tolerated(0.96) benign(0.034) TCGA-AA-A010-01 1 160811502 160811502 C T CD244 Missense_Mutation p.S84N 0.32 tolerated(0.93) benign(0.01) TCGA-AA-A010-01 1 160920398 160920398 C T ITLN2 Missense_Mutation p.R182H 0.39 tolerated(0.86) benign(0.005) TCGA-AA-A010-01 1 161010451 161010451 C T USF1 Missense_Mutation p.R210H 0.50 deleterious(0.03) benign(0.046) TCGA-AA-A010-01 1 161011504 161011504 C A USF1 Missense_Mutation p.A137S 0.36 tolerated(0.24) benign(0.027) TCGA-AA-A010-01 1 161023124 161023124 C A ARHGAP30 Missense_Mutation p.E196D 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A010-01 1 161026293 161026293 T C ARHGAP30 Missense_Mutation p.D77G 0.32 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 1 161070397 161070397 G T PFDN2 3'UTR 0.38 TCGA-AA-A010-01 1 161090368 161090368 G T NIT1 Missense_Mutation p.R266I 0.41 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 1 161130965 161130965 T C USP21 Missense_Mutation p.S179P 0.39 tolerated_low_confidence(0.46) benign(0) TCGA-AA-A010-01 1 161141674 161141674 G A B4GALT3 Missense_Mutation p.R372C 0.43 deleterious_low_confidence(0) benign(0.348) TCGA-AA-A010-01 1 161167952 161167952 G A ADAMTS4 Missense_Mutation p.R156W 0.37 deleterious(0.03) probably_damaging(0.989) TCGA-AA-A010-01 1 161199442 161199442 G A TOMM40L 3'UTR 0.35 TCGA-AA-A010-01 1 161254460 161254460 G T PCP4L1 3'UTR 0.30 TCGA-AA-A010-01 1 161332371 161332371 C T SDHC 3'UTR 0.36 TCGA-AA-A010-01 1 161334889 161334889 T C C1orf192 Missense_Mutation p.T134A 0.34 tolerated_low_confidence(0.12) benign(0.164) TCGA-AA-A010-01 1 161512913 161512913 A C FCGR3A Silent p.L254L 0.35 TCGA-AA-A010-01 1 161559542 161559542 C T RP11-25K21.6 Intron 0.38 TCGA-AA-A010-01 1 161641411 161641411 C T FCGR2B Silent p.S121S 0.36 TCGA-AA-A010-01 1 161676965 161676965 A C FCRLA 5'UTR 0.31 TCGA-AA-A010-01 1 161969937 161969937 C A OLFML2B Missense_Mutation p.K305N 0.31 tolerated(0.24) benign(0.041) TCGA-AA-A010-01 1 162325087 162325087 G T NOS1AP Missense_Mutation p.G236C 0.29 deleterious(0.03) benign(0.15) TCGA-AA-A010-01 1 162335355 162335355 C T RP11-565P22.6 Silent p.N53N 0.24 TCGA-AA-A010-01 1 16257958 16257958 G A SPEN Silent p.S1741S 0.38 TCGA-AA-A010-01 1 16272623 16272623 G A ZBTB17 Intron 0.28 TCGA-AA-A010-01 1 162740231 162740231 G A DDR2 Missense_Mutation p.R478H 0.29 tolerated(0.12) benign(0.223) TCGA-AA-A010-01 1 162741934 162741934 C T DDR2 Missense_Mutation p.A542V 0.31 deleterious(0.02) benign(0.259) TCGA-AA-A010-01 1 163043282 163043282 A G RGS4 Missense_Mutation p.E180G 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 163297332 163297332 C T NUF2 Nonsense_Mutation p.R60* 0.33 TCGA-AA-A010-01 1 163317623 163317623 C T NUF2 Missense_Mutation p.S340L 0.38 deleterious(0.01) possibly_damaging(0.656) TCGA-AA-A010-01 1 165173242 165173242 C T LMX1A Missense_Mutation p.D342N 0.34 tolerated(0.06) probably_damaging(0.941) TCGA-AA-A010-01 1 165370521 165370521 C A RXRG Missense_Mutation p.E457D 0.31 tolerated(0.11) possibly_damaging(0.86) TCGA-AA-A010-01 1 165378812 165378812 G A RXRG Silent p.V343V 0.34 TCGA-AA-A010-01 1 165636650 165636650 C A ALDH9A1 Missense_Mutation p.E415D 0.33 deleterious(0) possibly_damaging(0.875) TCGA-AA-A010-01 1 167096354 167096354 C A DUSP27 Missense_Mutation p.F662L 0.33 tolerated(0.12) benign(0.015) TCGA-AA-A010-01 1 167385281 167385281 T G POU2F1 3'UTR 0.35 TCGA-AA-A010-01 1 167757292 167757292 G T MPZL1 3'UTR 0.38 TCGA-AA-A010-01 1 167778933 167778933 G A ADCY10 Silent p.T1605T 0.40 TCGA-AA-A010-01 1 167779026 167779026 C T ADCY10 Silent p.T1574T 0.40 TCGA-AA-A010-01 1 167798606 167798606 G A ADCY10 Missense_Mutation p.R1217C 0.44 deleterious(0) possibly_damaging(0.696) TCGA-AA-A010-01 1 167802284 167802284 G A ADCY10 Silent p.V1178V 0.31 TCGA-AA-A010-01 1 167815497 167815497 G T ADCY10 Silent p.I814I 0.53 TCGA-AA-A010-01 1 167973229 167973229 T C DCAF6 Splice_Site p.X373_splice 0.33 TCGA-AA-A010-01 1 168073820 168073820 C T GPR161 Missense_Mutation p.R110H 0.35 tolerated(0.07) probably_damaging(0.91) TCGA-AA-A010-01 1 168215993 168215993 A G SFT2D2 3'UTR 0.35 TCGA-AA-A010-01 1 168260539 168260539 G T TBX19 Missense_Mutation p.E115D 0.44 deleterious(0.05) possibly_damaging(0.841) TCGA-AA-A010-01 1 168278110 168278110 G A TBX19 Silent p.G349G 0.44 TCGA-AA-A010-01 1 16907415 16907415 C A NBPF1 Missense_Mutation p.E472D 0.08 tolerated(0.06) probably_damaging(0.992) TCGA-AA-A010-01 1 169096486 169096486 G A ATP1B1 Missense_Mutation p.R136Q 0.36 tolerated(0.17) probably_damaging(0.984) TCGA-AA-A010-01 1 169267804 169267804 G T NME7 Missense_Mutation p.S213Y 0.29 deleterious(0) possibly_damaging(0.528) TCGA-AA-A010-01 1 169349822 169349822 C T BLZF1 Missense_Mutation p.R258C 0.32 deleterious(0) possibly_damaging(0.684) TCGA-AA-A010-01 1 169388174 169388174 A G CCDC181 Intron 0.25 TCGA-AA-A010-01 1 16945591 16945591 G T RP5-1182A14.5 3'Flank 0.11 TCGA-AA-A010-01 1 169512036 169512036 G A F5 Silent p.F764F 0.41 TCGA-AA-A010-01 1 169521923 169521923 G T F5 Missense_Mutation p.H390N 0.29 tolerated(0.25) benign(0.094) TCGA-AA-A010-01 1 16952334 16952334 G A CROCCP2 3'Flank 0.08 TCGA-AA-A010-01 1 16952876 16952876 T G CROCCP2 3'Flank 0.10 TCGA-AA-A010-01 1 169555601 169555601 G A F5 Silent p.L8L 0.37 TCGA-AA-A010-01 1 169562858 169562858 G A SELP Missense_Mutation p.R798C 0.40 deleterious(0.01) benign(0.239) TCGA-AA-A010-01 1 169586594 169586594 G T SELP Nonsense_Mutation p.Y51* 0.34 TCGA-AA-A010-01 1 169762173 169762173 C T METTL18 Missense_Mutation p.V222M 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 169831766 169831766 G T SCYL3 Silent p.V376V 0.35 TCGA-AA-A010-01 1 17023344 17023344 C T ESPNP RNA 0.22 TCGA-AA-A010-01 1 17029414 17029414 G A ESPNP RNA 0.21 TCGA-AA-A010-01 1 170633455 170633455 G T PRRX1 Missense_Mutation p.K32N 0.42 deleterious(0.01) probably_damaging(0.966) TCGA-AA-A010-01 1 170695412 170695412 C A PRRX1 Missense_Mutation p.L157I 0.35 tolerated(0.06) probably_damaging(0.952) TCGA-AA-A010-01 1 170931075 170931075 G A MROH9 Silent p.T111T 0.35 TCGA-AA-A010-01 1 170967383 170967383 G T MROH9 Missense_Mutation p.D522Y 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 1 171162634 171162634 T G FMO2 Missense_Mutation p.F98C 0.48 deleterious(0) probably_damaging(0.963) TCGA-AA-A010-01 1 171165903 171165903 G A FMO2 Missense_Mutation p.C146Y 0.36 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 1 171510890 171510890 C T PRRC2C Nonsense_Mutation p.R1427* 0.33 TCGA-AA-A010-01 1 171511038 171511038 C T PRRC2C Missense_Mutation p.S1476F 0.36 unknown(0) TCGA-AA-A010-01 1 171553588 171553588 C A PRRC2C Missense_Mutation p.L2556I 0.38 benign(0.391) TCGA-AA-A010-01 1 172437823 172437823 T G C1orf105 3'UTR 0.33 TCGA-AA-A010-01 1 17285164 17285164 G A CROCC Silent p.E1317E 0.43 TCGA-AA-A010-01 1 173504989 173504989 C A SLC9C2 Missense_Mutation p.K585N 0.42 tolerated(0.06) benign(0.006) TCGA-AA-A010-01 1 173542456 173542456 C T SLC9C2 Missense_Mutation p.R304K 0.38 tolerated(0.99) benign(0.004) TCGA-AA-A010-01 1 17354296 17354296 G T SDHB Missense_Mutation p.S163Y 0.35 deleterious(0.03) benign(0.001) TCGA-AA-A010-01 1 173556920 173556920 C T SLC9C2 Missense_Mutation p.G136E 0.33 deleterious(0.02) probably_damaging(0.971) TCGA-AA-A010-01 1 173579255 173579255 G T ANKRD45 3'UTR 0.35 TCGA-AA-A010-01 1 173754326 173754326 C T KLHL20 Missense_Mutation p.R591W 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 173873190 173873190 C A SERPINC1 Missense_Mutation p.G411V 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 173884032 173884032 G A SERPINC1 Missense_Mutation p.L23F 0.31 tolerated(0.08) benign(0.076) TCGA-AA-A010-01 1 173907780 173907780 T G RC3H1 3'UTR 0.53 TCGA-AA-A010-01 1 173915735 173915735 G T RC3H1 Missense_Mutation p.S947Y 0.37 tolerated(1) benign(0.004) TCGA-AA-A010-01 1 174973793 174973793 C T CACYBP Missense_Mutation p.A20V 0.37 tolerated(0.07) benign(0.032) TCGA-AA-A010-01 1 174983883 174983883 G T MRPS14 Silent p.R103R 0.50 TCGA-AA-A010-01 1 175046902 175046902 G T TNN Missense_Mutation p.E116D 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 1 175049509 175049509 G A TNN Missense_Mutation p.R332H 0.33 tolerated(0.39) benign(0.036) TCGA-AA-A010-01 1 175375864 175375864 G T TNR 5'UTR 0.33 TCGA-AA-A010-01 1 176671780 176671780 C A PAPPA2 Missense_Mutation p.L1092I 0.45 tolerated(0.29) benign(0.087) TCGA-AA-A010-01 1 176769199 176769199 C T PAPPA2 Silent p.S1711S 0.33 TCGA-AA-A010-01 1 176811590 176811590 A G PAPPA2 Silent p.%3D 0.38 TCGA-AA-A010-01 1 176926921 176926921 G A ASTN1 Missense_Mutation p.L594F 0.30 tolerated(0.1) possibly_damaging(0.699) TCGA-AA-A010-01 1 177133558 177133558 C A ASTN1 Missense_Mutation p.E85D 0.35 tolerated_low_confidence(0.58) benign(0.045) TCGA-AA-A010-01 1 17714905 17714905 C T PADI6 RNA 0.45 TCGA-AA-A010-01 1 17715015 17715015 C A PADI6 RNA 0.42 TCGA-AA-A010-01 1 177225194 177225194 A C BRINP2 Missense_Mutation p.N137H 0.31 deleterious(0.01) possibly_damaging(0.739) TCGA-AA-A010-01 1 177917029 177917029 T A SEC16B Missense_Mutation p.I532F 0.32 deleterious(0.05) probably_damaging(0.944) TCGA-AA-A010-01 1 178414779 178414779 T A RASAL2 Missense_Mutation p.Y537N 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 178490396 178490396 C T TEX35 Missense_Mutation p.R195W 0.37 deleterious_low_confidence(0) benign(0.231) TCGA-AA-A010-01 1 178875917 178875917 C T RALGPS2 Missense_Mutation p.S546L 0.36 deleterious(0.03) benign(0.012) TCGA-AA-A010-01 1 179401413 179401413 T - AXDND1 Frame_Shift_Del p.L501Yfs*14 0.19 TCGA-AA-A010-01 1 179503004 179503004 G T AXDND1 Missense_Mutation p.E930D 0.39 tolerated(0.55) benign(0) TCGA-AA-A010-01 1 179503919 179503919 G T AXDND1 Missense_Mutation p.E951D 0.40 deleterious(0.01) possibly_damaging(0.636) TCGA-AA-A010-01 1 179620011 179620011 A G TDRD5 Missense_Mutation p.T604A 0.33 deleterious(0) probably_damaging(0.963) TCGA-AA-A010-01 1 179834405 179834405 C T TOR1AIP2 Intron 0.22 TCGA-AA-A010-01 1 180063226 180063226 T G CEP350 Silent p.S2662S 0.41 TCGA-AA-A010-01 1 180147956 180147956 G A QSOX1 Silent p.A181A 0.29 TCGA-AA-A010-01 1 180155194 180155194 G T QSOX1 Missense_Mutation p.K298N 0.38 deleterious(0.02) benign(0.186) TCGA-AA-A010-01 1 18023495 18023495 G A ARHGEF10L Missense_Mutation p.E1154K 0.45 tolerated(0.14) possibly_damaging(0.5) TCGA-AA-A010-01 1 180240484 180240484 G A LHX4 Intron 0.40 TCGA-AA-A010-01 1 180804014 180804014 G A XPR1 Missense_Mutation p.R380Q 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 1 180805753 180805753 C T XPR1 Nonsense_Mutation p.R468* 0.35 TCGA-AA-A010-01 1 180885699 180885699 G A KIAA1614 Missense_Mutation p.G154S 0.35 tolerated(1) benign(0.001) TCGA-AA-A010-01 1 180914726 180914726 C T KIAA1614 3'UTR 0.32 TCGA-AA-A010-01 1 180945579 180945579 G T STX6 3'UTR 0.23 TCGA-AA-A010-01 1 18153130 18153130 G A ACTL8 3'UTR 0.41 TCGA-AA-A010-01 1 181686288 181686288 C T CACNA1E Missense_Mutation p.R459W 0.38 tolerated(0.05) possibly_damaging(0.689) TCGA-AA-A010-01 1 181686306 181686306 C T CACNA1E Silent p.L465L 0.39 TCGA-AA-A010-01 1 181688958 181688958 C A CACNA1E Silent p.V570V 0.28 TCGA-AA-A010-01 1 181721296 181721296 A C CACNA1E Missense_Mutation p.D1250A 0.45 deleterious(0.03) probably_damaging(0.959) TCGA-AA-A010-01 1 182025774 182025774 C T ZNF648 Missense_Mutation p.A458T 0.43 tolerated(0.22) probably_damaging(0.962) TCGA-AA-A010-01 1 182026915 182026915 C A ZNF648 Missense_Mutation p.E77D 0.41 deleterious(0.03) benign(0.039) TCGA-AA-A010-01 1 182355390 182355390 C T GLUL Splice_Site p.X159_splice 0.30 TCGA-AA-A010-01 1 182357774 182357774 G A GLUL Silent p.I33I 0.42 TCGA-AA-A010-01 1 182499991 182499991 A C RGSL1 Missense_Mutation p.Q770H 0.49 tolerated(0.64) benign(0.031) TCGA-AA-A010-01 1 182636089 182636089 G A RGS8 Nonsense_Mutation p.R34* 0.38 TCGA-AA-A010-01 1 182850469 182850469 C T DHX9 Missense_Mutation p.R899W 0.43 deleterious(0.02) benign(0.212) TCGA-AA-A010-01 1 183085790 183085790 C T LAMC1 Silent p.V469V 0.40 TCGA-AA-A010-01 1 183091039 183091039 C T LAMC1 Silent p.C724C 0.28 TCGA-AA-A010-01 1 183103801 183103801 G A LAMC1 Missense_Mutation p.A1286T 0.44 tolerated(0.08) probably_damaging(0.998) TCGA-AA-A010-01 1 183105702 183105702 C T LAMC1 Silent p.I1432I 0.30 TCGA-AA-A010-01 1 183616949 183616949 G A APOBEC4 Missense_Mutation p.P323L 0.35 tolerated(0.06) benign(0.126) TCGA-AA-A010-01 1 184677423 184677423 T G EDEM3 Missense_Mutation p.E634A 0.35 tolerated(0.08) possibly_damaging(0.758) TCGA-AA-A010-01 1 184677440 184677440 G T EDEM3 Missense_Mutation p.F628L 0.38 deleterious(0) possibly_damaging(0.677) TCGA-AA-A010-01 1 184680916 184680916 A G EDEM3 Silent p.S544S 0.16 TCGA-AA-A010-01 1 184772798 184772798 C T FAM129A Missense_Mutation p.R492Q 0.43 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 1 184863289 184863289 A C FAM129A Missense_Mutation p.S80A 0.35 tolerated(1) benign(0.001) TCGA-AA-A010-01 1 185153929 185153929 G A SWT1 Missense_Mutation p.R432H 0.38 tolerated(0.08) probably_damaging(0.992) TCGA-AA-A010-01 1 185191052 185191052 G T SWT1 Missense_Mutation p.K731N 0.30 tolerated(0.56) benign(0.001) TCGA-AA-A010-01 1 185259847 185259847 A G SWT1 Missense_Mutation p.E872G 0.39 deleterious(0.01) benign(0.415) TCGA-AA-A010-01 1 185951499 185951499 G A HMCN1 Missense_Mutation p.R923Q 0.36 benign(0.302) TCGA-AA-A010-01 1 185984562 185984562 T G HMCN1 Missense_Mutation p.D1634E 0.28 probably_damaging(0.997) TCGA-AA-A010-01 1 186072641 186072641 G T HMCN1 Missense_Mutation p.E3537D 0.31 probably_damaging(0.994) TCGA-AA-A010-01 1 186151369 186151369 G A HMCN1 Missense_Mutation p.C5455Y 0.31 probably_damaging(0.996) TCGA-AA-A010-01 1 186275793 186275793 G T PRG4 Missense_Mutation p.E314D 0.36 probably_damaging(0.96) TCGA-AA-A010-01 1 186277919 186277919 A T PRG4 Missense_Mutation p.K1023M 0.41 unknown(0) TCGA-AA-A010-01 1 186281527 186281527 A C TPR 3'UTR 0.45 TCGA-AA-A010-01 1 186305724 186305724 T C TPR Missense_Mutation p.T1537A 0.33 benign(0.217) TCGA-AA-A010-01 1 186315404 186315404 G A TPR Missense_Mutation p.R987C 0.41 benign(0.095) TCGA-AA-A010-01 1 186358719 186358719 G T C1orf27 Splice_Site p.X146_splice 0.38 TCGA-AA-A010-01 1 186934559 186934559 G A PLA2G4A Missense_Mutation p.R533Q 0.39 tolerated(0.55) benign(0.003) TCGA-AA-A010-01 1 18960975 18960975 C T PAX7 Silent p.C88C 0.33 TCGA-AA-A010-01 1 190067548 190067548 T C BRINP3 Missense_Mutation p.K634R 0.33 tolerated(0.49) benign(0.001) TCGA-AA-A010-01 1 190250701 190250701 G T BRINP3 Missense_Mutation p.A139D 0.46 deleterious(0) benign(0.343) TCGA-AA-A010-01 1 190250736 190250736 A C BRINP3 Silent p.L127L 0.45 TCGA-AA-A010-01 1 192153574 192153574 G T RGS18 Missense_Mutation p.D200Y 0.28 deleterious(0.01) possibly_damaging(0.756) TCGA-AA-A010-01 1 19215891 19215891 C T ALDH4A1 Missense_Mutation p.E72K 0.38 tolerated(0.1) benign(0.111) TCGA-AA-A010-01 1 192316499 192316499 A G RGS21 Missense_Mutation p.D23G 0.37 deleterious(0.02) probably_damaging(1) TCGA-AA-A010-01 1 193149394 193149394 A C B3GALT2 3'UTR 0.43 TCGA-AA-A010-01 1 19499363 19499363 G T UBR4 Missense_Mutation p.F1172L 0.40 benign(0.001) TCGA-AA-A010-01 1 19593755 19593755 T G AKR7L 3'UTR 0.38 TCGA-AA-A010-01 1 196197335 196197335 G A KCNT2 3'UTR 0.30 TCGA-AA-A010-01 1 196302996 196302996 C A KCNT2 Nonsense_Mutation p.E660* 0.35 TCGA-AA-A010-01 1 196716366 196716366 C A CFH Missense_Mutation p.L1207I 0.40 tolerated(0.23) benign(0.129) TCGA-AA-A010-01 1 196762765 196762765 A T CFHR3 3'UTR 0.31 TCGA-AA-A010-01 1 196794722 196794722 T C CFHR1 Silent p.N58N 0.36 TCGA-AA-A010-01 1 196796062 196796062 A G CFHR1 Silent p.R119R 0.37 TCGA-AA-A010-01 1 196881915 196881915 C A CFHR4 Missense_Mutation p.S347Y 0.10 deleterious(0.01) possibly_damaging(0.608) TCGA-AA-A010-01 1 196881927 196881927 C A CFHR4 Missense_Mutation p.S351Y 0.13 tolerated(1) possibly_damaging(0.608) TCGA-AA-A010-01 1 196920024 196920024 C T CFHR2 Missense_Mutation p.S99F 0.43 tolerated(0.14) probably_damaging(0.998) TCGA-AA-A010-01 1 196920041 196920041 C A CFHR2 Missense_Mutation p.L105M 0.42 tolerated(0.16) probably_damaging(0.982) TCGA-AA-A010-01 1 197019944 197019944 C A F13B Missense_Mutation p.D541Y 0.26 deleterious(0.04) possibly_damaging(0.489) TCGA-AA-A010-01 1 197062382 197062382 C T ASPM Missense_Mutation p.A3032T 0.64 tolerated(0.05) possibly_damaging(0.6) TCGA-AA-A010-01 1 197070485 197070485 C A ASPM Missense_Mutation p.Q2632H 0.35 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 1 197087001 197087001 C A ASPM Missense_Mutation p.R1328I 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 1 197145706 197145706 T C ZBTB41 Missense_Mutation p.K623E 0.35 deleterious(0) possibly_damaging(0.45) TCGA-AA-A010-01 1 197169391 197169391 C A ZBTB41 Missense_Mutation p.K71N 0.40 tolerated_low_confidence(0.33) possibly_damaging(0.563) TCGA-AA-A010-01 1 197396745 197396745 C T CRB1 Missense_Mutation p.R764C 0.34 deleterious(0.03) benign(0.041) TCGA-AA-A010-01 1 197704823 197704823 C T DENND1B Intron 0.42 TCGA-AA-A010-01 1 198492427 198492427 C T ATP6V1G3 3'UTR 0.36 TCGA-AA-A010-01 1 198492597 198492597 C T ATP6V1G3 Missense_Mutation p.S94N 0.34 tolerated(0.39) benign(0.007) TCGA-AA-A010-01 1 198676000 198676000 G T PTPRC Nonsense_Mutation p.E275* 0.31 TCGA-AA-A010-01 1 198682160 198682160 G A PTPRC Missense_Mutation p.R417K 0.32 tolerated(0.9) benign(0.004) TCGA-AA-A010-01 1 199997008 199997008 A C NR5A2 Missense_Mutation p.Q11H 0.39 deleterious_low_confidence(0) benign(0.332) TCGA-AA-A010-01 1 200014605 200014605 G T NR5A2 Missense_Mutation p.R119M 0.35 tolerated(0.25) benign(0.222) TCGA-AA-A010-01 1 200143231 200143231 C T NR5A2 Missense_Mutation p.R507W 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 200377891 200377891 T A ZNF281 Nonsense_Mutation p.K315* 0.35 TCGA-AA-A010-01 1 200539107 200539107 C A KIF14 Missense_Mutation p.R1198I 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 1 200569231 200569231 C A KIF14 Nonsense_Mutation p.E771* 0.43 TCGA-AA-A010-01 1 200583495 200583495 C A KIF14 Missense_Mutation p.R469I 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 200843178 200843178 C T GPR25 Missense_Mutation p.S338L 0.28 deleterious(0.01) benign(0.023) TCGA-AA-A010-01 1 200860646 200860646 T C C1orf106 5'Flank 0.45 TCGA-AA-A010-01 1 200965425 200965425 C T KIF21B Missense_Mutation p.A726T 0.39 tolerated(0.37) benign(0.007) TCGA-AA-A010-01 1 200969856 200969856 G A KIF21B Silent p.I485I 0.39 TCGA-AA-A010-01 1 201163315 201163315 G T IGFN1 Missense_Mutation p.S14I 0.35 unknown(0) TCGA-AA-A010-01 1 201169430 201169430 A G IGFN1 Missense_Mutation p.D175G 0.33 benign(0.021) TCGA-AA-A010-01 1 201351427 201351427 C T LAD1 Missense_Mutation p.E501K 0.42 tolerated(0.82) benign(0) TCGA-AA-A010-01 1 201458008 201458008 G A CSRP1 Missense_Mutation p.A129V 0.27 deleterious(0) probably_damaging(0.967) TCGA-AA-A010-01 1 201459357 201459357 G A CSRP1 Silent p.G76G 0.38 TCGA-AA-A010-01 1 201752744 201752744 C A NAV1 Missense_Mutation p.F856L 0.41 tolerated(0.91) benign(0.284) TCGA-AA-A010-01 1 201752852 201752852 G T NAV1 Missense_Mutation p.M892I 0.38 tolerated(0.15) benign(0.044) TCGA-AA-A010-01 1 201965418 201965418 C A RNPEP Intron 0.36 TCGA-AA-A010-01 1 202097422 202097422 A T GPR37L1 Missense_Mutation p.D395V 0.43 deleterious(0.02) possibly_damaging(0.678) TCGA-AA-A010-01 1 202128661 202128661 T C PTPN7 Intron 0.44 TCGA-AA-A010-01 1 20231475 20231475 G T OTUD3 Missense_Mutation p.R277I 0.37 tolerated(0.11) benign(0.08) TCGA-AA-A010-01 1 20246797 20246797 G T PLA2G2E 3'UTR 0.41 TCGA-AA-A010-01 1 202544260 202544260 T C PPP1R12B Intron 0.10 TCGA-AA-A010-01 1 202573647 202573647 T C SYT2 Missense_Mutation p.N94S 0.34 tolerated(0.5) benign(0) TCGA-AA-A010-01 1 203053853 203053853 G A MYOG Missense_Mutation p.P159S 0.46 tolerated(0.43) probably_damaging(0.968) TCGA-AA-A010-01 1 203134602 203134602 C A ADORA1 Missense_Mutation p.F185L 0.34 deleterious(0.02) probably_damaging(1) TCGA-AA-A010-01 1 203134847 203134847 G T ADORA1 Missense_Mutation p.S267I 0.32 tolerated(0.19) benign(0.003) TCGA-AA-A010-01 1 203194799 203194799 C A CHIT1 Missense_Mutation p.K85N 0.34 tolerated(1) possibly_damaging(0.651) TCGA-AA-A010-01 1 203466178 203466178 C T OPTC Missense_Mutation p.S102L 0.37 tolerated(0.13) benign(0.013) TCGA-AA-A010-01 1 203652493 203652493 C A ATP2B4 Missense_Mutation p.L54I 0.36 tolerated(0.33) benign(0.007) TCGA-AA-A010-01 1 203676264 203676264 C A ATP2B4 Missense_Mutation p.F409L 0.39 deleterious(0.01) possibly_damaging(0.839) TCGA-AA-A010-01 1 203743596 203743596 C T LAX1 Silent p.P328P 0.31 TCGA-AA-A010-01 1 203816515 203816515 C T ZC3H11A Missense_Mutation p.R416W 0.33 tolerated(0.05) benign(0.111) TCGA-AA-A010-01 1 203821627 203821627 G T ZC3H11A 3'UTR 0.42 TCGA-AA-A010-01 1 204518448 204518448 G A MDM4 Missense_Mutation p.V371I 0.40 tolerated(0.79) benign(0.052) TCGA-AA-A010-01 1 204913361 204913361 C A NFASC 5'UTR 0.38 TCGA-AA-A010-01 1 204923458 204923458 G A NFASC Missense_Mutation p.A120T 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 205027449 205027449 C T CNTN2 Missense_Mutation p.T119I 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 1 205033838 205033838 C A CNTN2 Missense_Mutation p.F493L 0.39 tolerated(0.64) benign(0.141) TCGA-AA-A010-01 1 205039140 205039140 C T CNTN2 Silent p.R794R 0.45 TCGA-AA-A010-01 1 205041614 205041614 C T CNTN2 Missense_Mutation p.P912L 0.38 deleterious(0) possibly_damaging(0.467) TCGA-AA-A010-01 1 205065966 205065966 T G RBBP5 Missense_Mutation p.N414H 0.37 tolerated(0.12) benign(0.359) TCGA-AA-A010-01 1 20518528 20518528 C T UBXN10 3'UTR 0.39 TCGA-AA-A010-01 1 205272953 205272953 G T NUAK2 Silent p.L504L 0.30 TCGA-AA-A010-01 1 205739491 205739491 G T RAB7L1 Silent p.S197S 0.37 TCGA-AA-A010-01 1 205760536 205760536 G T SLC41A1 3'UTR 0.35 TCGA-AA-A010-01 1 205779256 205779256 G T SLC41A1 Missense_Mutation p.P105Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 1 205890772 205890772 G A SLC26A9 Silent p.F659F 0.42 TCGA-AA-A010-01 1 206225064 206225064 C T AVPR1B Silent p.F208F 0.35 TCGA-AA-A010-01 1 20639461 20639461 T C VWA5B1 Missense_Mutation p.V91A 0.35 tolerated(0.65) benign(0.001) TCGA-AA-A010-01 1 206634879 206634879 C A SRGAP2 3'UTR 0.18 TCGA-AA-A010-01 1 206821877 206821877 C T DYRK3 Missense_Mutation p.S445F 0.36 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 1 206821966 206821966 C T DYRK3 Missense_Mutation p.R475W 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 207039238 207039238 C T IL20 Missense_Mutation p.A14V 0.45 tolerated(1) unknown(0) TCGA-AA-A010-01 1 207087316 207087316 C T FAIM3 Missense_Mutation p.G54E 0.35 tolerated(1) benign(0.001) TCGA-AA-A010-01 1 207110578 207110578 C T PIGR Missense_Mutation p.D303N 0.39 tolerated(0.45) benign(0.038) TCGA-AA-A010-01 1 207498083 207498083 G A CD55 Missense_Mutation p.E156K 0.17 deleterious(0.05) benign(0.004) TCGA-AA-A010-01 1 207498096 207498096 G T CD55 Splice_Site p.X160_splice 0.19 TCGA-AA-A010-01 1 207648534 207648534 C T CR2 Missense_Mutation p.P897S 0.41 tolerated(0.05) possibly_damaging(0.858) TCGA-AA-A010-01 1 207741173 207741173 C A CR1 Silent p.I1319I 0.23 TCGA-AA-A010-01 1 207872589 207872589 C A CR1L Missense_Mutation p.L400I 0.37 tolerated(0.13) benign(0.014) TCGA-AA-A010-01 1 207890889 207890889 G T CR1L Nonsense_Mutation p.E499* 0.35 TCGA-AA-A010-01 1 207956659 207956659 A C CD46 Silent p.G337G 0.42 TCGA-AA-A010-01 1 207959022 207959022 G T CD46 Missense_Mutation p.K374N 0.45 deleterious(0) probably_damaging(0.918) TCGA-AA-A010-01 1 208061341 208061341 A G CD34 Intron 0.44 TCGA-AA-A010-01 1 2082315 2082315 C T PRKCZ Silent p.I258I 0.49 TCGA-AA-A010-01 1 20964572 20964572 C T PINK1 Missense_Mutation p.P209S 0.39 tolerated(0.25) benign(0.004) TCGA-AA-A010-01 1 209803245 209803245 C A LAMB3 Missense_Mutation p.E323D 0.34 tolerated(0.14) benign(0.147) TCGA-AA-A010-01 1 209880129 209880129 G A HSD11B1 Missense_Mutation p.A99T 0.44 tolerated(0.14) benign(0.032) TCGA-AA-A010-01 1 209905906 209905906 C A HSD11B1 Missense_Mutation p.L215I 0.31 deleterious(0.02) possibly_damaging(0.744) TCGA-AA-A010-01 1 20991216 20991216 C T KIF17 Missense_Mutation p.S984N 0.37 tolerated(0.2) benign(0.008) TCGA-AA-A010-01 1 20998662 20998662 C A KIF17 Missense_Mutation p.D831Y 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 210016993 210016993 G T DIEXF Missense_Mutation p.G660V 0.16 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 1 210334159 210334159 T C SYT14 Silent p.N544N 0.24 TCGA-AA-A010-01 1 2103497 2103497 C A PRKCZ Missense_Mutation p.F355L 0.32 deleterious(0) possibly_damaging(0.482) TCGA-AA-A010-01 1 21049303 21049303 G A SH2D5 Silent p.C338C 0.40 TCGA-AA-A010-01 1 21106902 21106902 A G HP1BP3 Missense_Mutation p.V11A 0.38 tolerated_low_confidence(0.14) benign(0.017) TCGA-AA-A010-01 1 211529734 211529734 G T TRAF5 Missense_Mutation p.R101I 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 1 211749179 211749179 C A SLC30A1 Nonsense_Mutation p.E359* 0.36 TCGA-AA-A010-01 1 211749305 211749305 C A SLC30A1 Missense_Mutation p.D317Y 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 212154471 212154471 A C INTS7 Missense_Mutation p.S398R 0.29 tolerated(0.17) probably_damaging(0.947) TCGA-AA-A010-01 1 212190306 212190306 C T INTS7 Missense_Mutation p.R144H 0.37 deleterious(0) possibly_damaging(0.829) TCGA-AA-A010-01 1 212619386 212619386 G A NENF 3'UTR 0.38 TCGA-AA-A010-01 1 21268540 21268540 T C EIF4G3 Missense_Mutation p.I319M 0.40 tolerated_low_confidence(0.1) benign(0.089) TCGA-AA-A010-01 1 213009454 213009454 T A C1orf227 Missense_Mutation p.K13I 0.38 deleterious(0) possibly_damaging(0.844) TCGA-AA-A010-01 1 213414047 213414047 G A RPS6KC1 Missense_Mutation p.G410S 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 214170561 214170561 G A PROX1 Missense_Mutation p.R228Q 0.39 tolerated(0.1) probably_damaging(0.98) TCGA-AA-A010-01 1 214507436 214507436 G A SMYD2 Intron 0.41 TCGA-AA-A010-01 1 214815271 214815271 A C CENPF Missense_Mutation p.E1197A 0.28 benign(0.359) TCGA-AA-A010-01 1 214815491 214815491 A G CENPF Silent p.E1270E 0.39 TCGA-AA-A010-01 1 214816385 214816385 G T CENPF Missense_Mutation p.E1568D 0.25 benign(0.024) TCGA-AA-A010-01 1 214816514 214816514 G T CENPF Missense_Mutation p.Q1611H 0.35 probably_damaging(0.997) TCGA-AA-A010-01 1 214818799 214818799 G A CENPF Silent p.Q1962Q 0.46 TCGA-AA-A010-01 1 214820415 214820415 C A CENPF Missense_Mutation p.S2501Y 0.40 possibly_damaging(0.884) TCGA-AA-A010-01 1 215259990 215259990 T C KCNK2 Missense_Mutation p.V109A 0.34 deleterious(0) benign(0.42) TCGA-AA-A010-01 1 215342563 215342563 G A KCNK2 Missense_Mutation p.R166H 0.34 tolerated(0.22) benign(0.003) TCGA-AA-A010-01 1 215752355 215752355 G A KCTD3 Missense_Mutation p.R137H 0.46 tolerated(0.09) benign(0.016) TCGA-AA-A010-01 1 215844360 215844360 G T USH2A Missense_Mutation p.S4696Y 0.37 benign(0.078) TCGA-AA-A010-01 1 215972288 215972288 A G USH2A Missense_Mutation p.C3307R 0.42 probably_damaging(1) TCGA-AA-A010-01 1 216369942 216369942 G T USH2A Missense_Mutation p.L1402I 0.38 benign(0.001) TCGA-AA-A010-01 1 216371663 216371663 C T USH2A Missense_Mutation p.E1359K 0.32 probably_damaging(0.945) TCGA-AA-A010-01 1 216424311 216424311 T C USH2A Missense_Mutation p.T701A 0.44 possibly_damaging(0.883) TCGA-AA-A010-01 1 216496929 216496929 G A USH2A Silent p.F479F 0.20 TCGA-AA-A010-01 1 216538360 216538360 C A USH2A Missense_Mutation p.R240I 0.36 possibly_damaging(0.616) TCGA-AA-A010-01 1 216595243 216595243 C A USH2A Missense_Mutation p.A146S 0.51 benign(0.1) TCGA-AA-A010-01 1 216692642 216692642 G A ESRRG Silent p.D340D 0.19 TCGA-AA-A010-01 1 216737702 216737702 A T ESRRG Missense_Mutation p.L253M 0.27 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 1 21807435 21807435 A G NBPF3 Missense_Mutation p.D465G 0.29 tolerated(0.09) probably_damaging(0.956) TCGA-AA-A010-01 1 21808198 21808198 G A NBPF3 Silent p.Q514Q 0.09 TCGA-AA-A010-01 1 21904092 21904092 G A ALPL Missense_Mutation p.G509D 0.38 tolerated(0.42) unknown(0) TCGA-AA-A010-01 1 21930176 21930176 C T RAP1GAP Intron 0.35 TCGA-AA-A010-01 1 22005839 22005839 T G USP48 3'UTR 0.43 TCGA-AA-A010-01 1 220088634 220088634 C T SLC30A10 3'UTR 0.31 TCGA-AA-A010-01 1 220170392 220170392 G A EPRS Missense_Mutation p.S825F 0.41 deleterious(0.01) benign(0.127) TCGA-AA-A010-01 1 220208321 220208321 G A EPRS Missense_Mutation p.R56C 0.32 deleterious(0) probably_damaging(0.985) TCGA-AA-A010-01 1 220231167 220231167 G A BPNT1 3'UTR 0.35 TCGA-AA-A010-01 1 22041932 22041932 C A USP48 Missense_Mutation p.R638I 0.39 tolerated(0.18) benign(0.008) TCGA-AA-A010-01 1 220440365 220440365 C T RAB3GAP2 Intron 0.40 TCGA-AA-A010-01 1 221055621 221055621 G A HLX Silent p.E296E 0.35 TCGA-AA-A010-01 1 22148514 22148514 C A LDLRAD2 Intron 0.33 TCGA-AA-A010-01 1 222696038 222696038 C T HHIPL2 Missense_Mutation p.V694I 0.31 tolerated_low_confidence(0.2) benign(0.014) TCGA-AA-A010-01 1 222794513 222794513 G A MIA3 Missense_Mutation p.R49H 0.41 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 1 222803476 222803477 - A MIA3 Frame_Shift_Ins p.V974Sfs*4 0.23 TCGA-AA-A010-01 1 222822181 222822181 G T MIA3 Missense_Mutation p.R1207I 0.36 deleterious(0) benign(0.068) TCGA-AA-A010-01 1 222903411 222903411 C T BROX Missense_Mutation p.T294I 0.37 tolerated(0.07) benign(0.346) TCGA-AA-A010-01 1 222906205 222906205 T A BROX 3'UTR 0.25 TCGA-AA-A010-01 1 223116578 223116578 C T DISP1 Missense_Mutation p.T138M 0.41 deleterious(0.01) benign(0.157) TCGA-AA-A010-01 1 223176482 223176482 G A DISP1 Nonsense_Mutation p.W581* 0.35 TCGA-AA-A010-01 1 223177199 223177199 C T DISP1 Silent p.S820S 0.47 TCGA-AA-A010-01 1 223177816 223177816 C A DISP1 Missense_Mutation p.S1026Y 0.36 deleterious(0.04) probably_damaging(0.981) TCGA-AA-A010-01 1 223178969 223178969 G T DISP1 Missense_Mutation p.E1410D 0.39 tolerated_low_confidence(0.23) benign(0.003) TCGA-AA-A010-01 1 223179182 223179182 A G DISP1 Silent p.Q1481Q 0.32 TCGA-AA-A010-01 1 223284855 223284855 G T TLR5 Missense_Mutation p.L507M 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 223395557 223395557 G T SUSD4 Missense_Mutation p.P484T 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 223949290 223949290 G A CAPN2 Missense_Mutation p.D513N 0.37 deleterious(0.01) benign(0.227) TCGA-AA-A010-01 1 22405216 22405216 G A CDC42 Intron 0.27 TCGA-AA-A010-01 1 224415334 224415334 G A NVL Silent p.S855S 0.34 TCGA-AA-A010-01 1 224475558 224475558 G A NVL Silent p.G571G 0.32 TCGA-AA-A010-01 1 224492855 224492855 G T NVL Missense_Mutation p.S210Y 0.36 tolerated(1) benign(0.003) TCGA-AA-A010-01 1 224586628 224586628 G A WDR26 Missense_Mutation p.R510W 0.40 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 1 225393759 225393759 A G DNAH14 Missense_Mutation p.T1595A 0.20 tolerated(0.06) benign(0.217) TCGA-AA-A010-01 1 225445770 225445770 C A DNAH14 Missense_Mutation p.S2319Y 0.30 probably_damaging(0.971) TCGA-AA-A010-01 1 225592162 225592162 C T LBR Missense_Mutation p.R544H 0.36 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 1 225598047 225598047 C A LBR Missense_Mutation p.M420I 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A010-01 1 225976772 225976772 A C SRP9 Intron 0.38 TCGA-AA-A010-01 1 226016446 226016446 C A EPHX1 Missense_Mutation p.L6I 0.40 tolerated(0.41) benign(0.005) TCGA-AA-A010-01 1 226180176 226180176 T G SDE2 Missense_Mutation p.K148T 0.36 deleterious(0.01) possibly_damaging(0.872) TCGA-AA-A010-01 1 226421140 226421140 G A LIN9 Missense_Mutation p.R460W 0.35 deleterious(0.01) possibly_damaging(0.889) TCGA-AA-A010-01 1 226474059 226474059 G A LIN9 Missense_Mutation p.R183W 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 226551745 226551745 G A PARP1 Silent p.I895I 0.42 TCGA-AA-A010-01 1 226552798 226552798 G T PARP1 Missense_Mutation p.H855N 0.38 tolerated(0.05) benign(0.034) TCGA-AA-A010-01 1 226827298 226827298 T C ITPKB Missense_Mutation p.E838G 0.38 deleterious(0.02) benign(0.278) TCGA-AA-A010-01 1 226923323 226923323 C T ITPKB Missense_Mutation p.E613K 0.36 deleterious(0) possibly_damaging(0.631) TCGA-AA-A010-01 1 226923524 226923524 C T ITPKB Missense_Mutation p.E546K 0.35 deleterious_low_confidence(0) benign(0.022) TCGA-AA-A010-01 1 227071564 227071564 C T PSEN2 Silent p.I100I 0.37 TCGA-AA-A010-01 1 227259952 227259952 G A CDC42BPA Silent p.I928I 0.42 TCGA-AA-A010-01 1 227843092 227843092 G T ZNF678 Nonsense_Mutation p.E381* 0.28 TCGA-AA-A010-01 1 227919985 227919985 G A JMJD4 3'UTR 0.50 TCGA-AA-A010-01 1 228285654 228285654 C T ARF1 Silent p.S162S 0.36 TCGA-AA-A010-01 1 228333355 228333355 G A GUK1 Intron 0.47 TCGA-AA-A010-01 1 228333443 228333443 G A GUK1 Intron 0.28 TCGA-AA-A010-01 1 228346843 228346843 G A GJC2 3'UTR 0.36 TCGA-AA-A010-01 1 228447306 228447306 G T OBSCN Nonsense_Mutation p.E1656* 0.06 TCGA-AA-A010-01 1 228461487 228461487 T G OBSCN Missense_Mutation p.I2093M 0.35 possibly_damaging(0.647) TCGA-AA-A010-01 1 228475488 228475488 C T OBSCN Missense_Mutation p.A3642V 0.45 possibly_damaging(0.811) TCGA-AA-A010-01 1 228494754 228494754 G A OBSCN Missense_Mutation p.V4984M 0.37 probably_damaging(0.932) TCGA-AA-A010-01 1 228539088 228539088 C T OBSCN Silent p.S7119S 0.44 TCGA-AA-A010-01 1 228539143 228539143 G A OBSCN Missense_Mutation p.E7138K 0.36 benign(0.083) TCGA-AA-A010-01 1 228547640 228547640 G A OBSCN Intron 0.40 TCGA-AA-A010-01 1 228553245 228553245 C T OBSCN Silent p.I7306I 0.36 TCGA-AA-A010-01 1 228612809 228612809 C T HIST3H3 Missense_Mutation p.R73H 0.43 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-AA-A010-01 1 22915792 22915792 C A EPHA8 Intron 0.32 TCGA-AA-A010-01 1 22920051 22920051 C T EPHA8 Missense_Mutation p.A492V 0.32 deleterious(0.02) benign(0.257) TCGA-AA-A010-01 1 22924273 22924273 C T EPHA8 Missense_Mutation p.R679W 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 229588391 229588391 C A NUP133 Splice_Site p.X994_splice 0.31 TCGA-AA-A010-01 1 229602465 229602465 C T NUP133 Silent p.E705E 0.47 TCGA-AA-A010-01 1 230401052 230401052 T A GALNT2 Nonsense_Mutation p.L460* 0.40 TCGA-AA-A010-01 1 230798903 230798903 T C COG2 Missense_Mutation p.V106A 0.45 deleterious(0) benign(0.217) TCGA-AA-A010-01 1 231337172 231337172 G A TRIM67 Silent p.P481P 0.39 TCGA-AA-A010-01 1 231471921 231471921 A G EXOC8 Missense_Mutation p.V524A 0.34 tolerated(0.32) benign(0.012) TCGA-AA-A010-01 1 23189571 23189571 G A EPHB2 Missense_Mutation p.A285T 0.39 tolerated(0.61) benign(0.001) TCGA-AA-A010-01 1 23191577 23191577 G A EPHB2 Missense_Mutation p.R392H 0.35 tolerated(0.11) benign(0.031) TCGA-AA-A010-01 1 231954353 231954353 C T DISC1 Intron 0.27 TCGA-AA-A010-01 1 232551372 232551372 C A SIPA1L2 Splice_Site p.X1544_splice 0.34 TCGA-AA-A010-01 1 232601014 232601014 G A SIPA1L2 Nonsense_Mutation p.R798* 0.30 TCGA-AA-A010-01 1 232650180 232650180 G A SIPA1L2 Silent p.H302H 0.31 TCGA-AA-A010-01 1 232942265 232942265 C T MAP10 Missense_Mutation p.S499F 0.37 tolerated(0.14) benign(0.037) TCGA-AA-A010-01 1 233134043 233134043 G A PCNXL2 Silent p.G1915G 0.37 TCGA-AA-A010-01 1 233135110 233135110 C T PCNXL2 Missense_Mutation p.V1782I 0.44 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 1 233490744 233490744 G A MLK4 Missense_Mutation p.R433K 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A010-01 1 233497801 233497801 G T MLK4 Missense_Mutation p.E438D 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 1 234040834 234040834 G A SLC35F3 Missense_Mutation p.R4Q 0.36 tolerated_low_confidence(0.08) probably_damaging(0.947) TCGA-AA-A010-01 1 23420714 23420714 C T LUZP1 Missense_Mutation p.R14H 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 234509379 234509379 C T COA6 5'Flank 0.33 TCGA-AA-A010-01 1 234527257 234527257 C A TARBP1 3'UTR 0.23 TCGA-AA-A010-01 1 234603259 234603259 C A TARBP1 Nonsense_Mutation p.E413* 0.37 TCGA-AA-A010-01 1 235377185 235377185 T C ARID4B Silent p.G580G 0.33 TCGA-AA-A010-01 1 235506225 235506225 C T GGPS1 3'UTR 0.76 TCGA-AA-A010-01 1 235507142 235507142 T G GGPS1 3'UTR 0.39 TCGA-AA-A010-01 1 235617564 235617564 G A B3GALNT2 Silent p.P405P 0.40 TCGA-AA-A010-01 1 235628900 235628900 G T B3GALNT2 Intron 0.23 TCGA-AA-A010-01 1 235860568 235860568 G T LYST Missense_Mutation p.P3460H 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 235944202 235944202 A C LYST Missense_Mutation p.F1726C 0.45 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 1 235972592 235972592 A C LYST Missense_Mutation p.F509C 0.41 deleterious(0) possibly_damaging(0.786) TCGA-AA-A010-01 1 236389777 236389777 C A ERO1LB Nonsense_Mutation p.E282* 0.33 TCGA-AA-A010-01 1 236433186 236433186 G A ERO1LB Missense_Mutation p.R71C 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 236729304 236729304 G T HEATR1 Silent p.V1450V 0.37 TCGA-AA-A010-01 1 236758930 236758930 G A HEATR1 Missense_Mutation p.L334F 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 236761228 236761228 C A HEATR1 Missense_Mutation p.D185Y 0.34 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 1 236976058 236976058 G A MTR Missense_Mutation p.A175T 0.37 deleterious(0.04) probably_damaging(0.954) TCGA-AA-A010-01 1 237015897 237015897 G A MTR Missense_Mutation p.R591Q 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 23743854 23743854 C A TCEA3 Nonsense_Mutation p.G90* 0.41 TCGA-AA-A010-01 1 237655206 237655206 A G RYR2 Silent p.K603K 0.14 TCGA-AA-A010-01 1 237659862 237659862 G T RYR2 Missense_Mutation p.K671N 0.35 benign(0.34) TCGA-AA-A010-01 1 237666707 237666707 G A RYR2 Missense_Mutation p.E839K 0.36 possibly_damaging(0.549) TCGA-AA-A010-01 1 237753947 237753947 G T RYR2 Missense_Mutation p.R1272I 0.35 benign(0.001) TCGA-AA-A010-01 1 237753993 237753993 G T RYR2 Missense_Mutation p.Q1287H 0.32 benign(0.166) TCGA-AA-A010-01 1 237754053 237754053 G A RYR2 Silent p.P1307P 0.18 TCGA-AA-A010-01 1 237755148 237755148 T C RYR2 Missense_Mutation p.S1424P 0.34 benign(0.007) TCGA-AA-A010-01 1 237777917 237777917 T C RYR2 Missense_Mutation p.I1830T 0.32 benign(0.004) TCGA-AA-A010-01 1 237778027 237778027 G T RYR2 Nonsense_Mutation p.E1867* 0.38 TCGA-AA-A010-01 1 237798272 237798272 C T RYR2 Missense_Mutation p.R2258C 0.44 probably_damaging(0.978) TCGA-AA-A010-01 1 237817710 237817710 A G RYR2 Missense_Mutation p.Q2654R 0.39 benign(0.003) TCGA-AA-A010-01 1 237824120 237824120 T G RYR2 Missense_Mutation p.I2770S 0.27 benign(0.01) TCGA-AA-A010-01 1 237841403 237841403 C A RYR2 Missense_Mutation p.F2962L 0.30 probably_damaging(0.971) TCGA-AA-A010-01 1 237893564 237893564 C T RYR2 Missense_Mutation p.R3615W 0.37 probably_damaging(0.918) TCGA-AA-A010-01 1 237923117 237923117 C T RYR2 Silent p.F3789F 0.34 TCGA-AA-A010-01 1 237942055 237942055 G T RYR2 Missense_Mutation p.Q3955H 0.36 probably_damaging(0.984) TCGA-AA-A010-01 1 237949315 237949315 A C RYR2 Missense_Mutation p.K4436T 0.30 benign(0.106) TCGA-AA-A010-01 1 237955586 237955586 T - RYR2 Frame_Shift_Del p.S4583Lfs*11 0.27 TCGA-AA-A010-01 1 237982395 237982395 C T RYR2 Silent p.I4831I 0.35 TCGA-AA-A010-01 1 238048147 238048147 C T ZP4 Missense_Mutation p.V438M 0.40 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 1 238048599 238048599 C A ZP4 Missense_Mutation p.D393Y 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 238049174 238049174 G A ZP4 Silent p.S284S 0.33 TCGA-AA-A010-01 1 238090459 238090459 G A RP11-193H5.1 RNA 0.25 TCGA-AA-A010-01 1 23836416 23836416 C T E2F2 Missense_Mutation p.D424N 0.80 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 240497481 240497481 T G FMN2 Missense_Mutation p.F1573V 0.38 probably_damaging(0.999) TCGA-AA-A010-01 1 24113888 24113888 G T PITHD1 3'UTR 0.39 TCGA-AA-A010-01 1 241752099 241752099 G A KMO Silent p.A355A 0.43 TCGA-AA-A010-01 1 242048759 242048759 G A EXO1 Silent p.P785P 0.33 TCGA-AA-A010-01 1 2422649 2422649 C T PLCH2 Missense_Mutation p.R485C 0.33 deleterious(0) probably_damaging(0.921) TCGA-AA-A010-01 1 242451724 242451724 C T PLD5 Silent p.K145K 0.36 TCGA-AA-A010-01 1 2428316 2428316 G T PLCH2 Missense_Mutation p.Q634H 0.38 deleterious(0.01) benign(0.059) TCGA-AA-A010-01 1 2430545 2430545 G T PLCH2 Missense_Mutation p.E792D 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-AA-A010-01 1 243289701 243289701 A C CEP170 3'UTR 0.45 TCGA-AA-A010-01 1 243354733 243354733 A C CEP170 Missense_Mutation p.F232C 0.43 deleterious(0.02) possibly_damaging(0.765) TCGA-AA-A010-01 1 243668637 243668637 C A AKT3 Splice_Site p.X452_splice 0.32 TCGA-AA-A010-01 1 24393579 24393579 C A MYOM3 Splice_Site p.X1119_splice 0.37 TCGA-AA-A010-01 1 244219021 244219021 T G ZBTB18 3'UTR 0.38 TCGA-AA-A010-01 1 24447508 24447508 G A IL22RA1 Silent p.I504I 0.36 TCGA-AA-A010-01 1 244723982 244723982 A T C1orf101 Nonsense_Mutation p.R348* 0.29 TCGA-AA-A010-01 1 244773566 244773566 A G C1orf101 Missense_Mutation p.T810A 0.36 deleterious(0) probably_damaging(0.976) TCGA-AA-A010-01 1 245017743 245017743 T G HNRNPU 3'UTR 0.34 TCGA-AA-A010-01 1 245027050 245027050 C T HNRNPU Missense_Mutation p.S187N 0.52 tolerated(0.31) benign(0.213) TCGA-AA-A010-01 1 2452266 2452266 C T PANK4 Missense_Mutation p.V168M 0.33 tolerated(0.2) benign(0.012) TCGA-AA-A010-01 1 245849122 245849122 C A KIF26B Missense_Mutation p.P946H 0.34 deleterious(0.02) unknown(0) TCGA-AA-A010-01 1 245912894 245912894 C A SMYD3 Nonsense_Mutation p.E420* 0.37 TCGA-AA-A010-01 1 24669215 24669215 G A GRHL3 Missense_Mutation p.R413Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 246754876 246754876 C T CNST Silent p.S4S 0.33 TCGA-AA-A010-01 1 24680863 24680863 G T GRHL3 Intron 0.33 TCGA-AA-A010-01 1 246811427 246811427 T G CNST Intron 0.24 TCGA-AA-A010-01 1 246939738 246939738 C T RP11-439E19.10 3'Flank 0.36 TCGA-AA-A010-01 1 247013717 247013717 A C AHCTF1 Missense_Mutation p.V1873G 0.36 deleterious(0.02) benign(0.047) TCGA-AA-A010-01 1 247150233 247150233 G T ZNF695 3'UTR 0.40 TCGA-AA-A010-01 1 247275498 247275498 C T C1orf229 Missense_Mutation p.G10D 0.46 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AA-A010-01 1 247320483 247320483 C T ZNF124 Silent p.E85E 0.44 TCGA-AA-A010-01 1 247492153 247492153 C A ZNF496 Missense_Mutation p.D136Y 0.38 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 1 247586625 247586625 G A NLRP3 Missense_Mutation p.R126K 0.34 tolerated(0.37) benign(0.004) TCGA-AA-A010-01 1 247588527 247588527 G T NLRP3 Missense_Mutation p.K594N 0.45 deleterious(0.01) possibly_damaging(0.675) TCGA-AA-A010-01 1 247599413 247599413 G T NLRP3 Missense_Mutation p.K880N 0.35 deleterious(0.03) benign(0.347) TCGA-AA-A010-01 1 247607990 247607990 G A NLRP3 Missense_Mutation p.D960N 0.25 tolerated(0.09) benign(0.011) TCGA-AA-A010-01 1 24768667 24768667 C A NIPAL3 Silent p.A95A 0.31 TCGA-AA-A010-01 1 247920899 247920899 G A OR1C1 Silent p.S270S 0.50 TCGA-AA-A010-01 1 247978827 247978827 G T OR14A16 Missense_Mutation p.L69I 0.43 tolerated(0.2) benign(0.058) TCGA-AA-A010-01 1 248112599 248112599 C A OR2L8 Missense_Mutation p.S147Y 0.11 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A010-01 1 248224377 248224377 C - OR2L3 Frame_Shift_Del p.I133Sfs*3 0.35 TCGA-AA-A010-01 1 248224423 248224423 C A OR2L3 Missense_Mutation p.S147Y 0.16 deleterious(0.02) probably_damaging(0.991) TCGA-AA-A010-01 1 248224480 248224480 C A OR2L3 Missense_Mutation p.P166H 0.51 deleterious(0) possibly_damaging(0.534) TCGA-AA-A010-01 1 248308449 248308449 C A OR2M5 5'Flank 0.36 TCGA-AA-A010-01 1 248309152 248309152 C T OR2M5 Missense_Mutation p.R235C 0.37 deleterious(0.03) benign(0.015) TCGA-AA-A010-01 1 248309347 248309347 G A OR2M5 Missense_Mutation p.A300T 0.33 deleterious(0) possibly_damaging(0.616) TCGA-AA-A010-01 1 248344299 248344299 A G OR2M2 Missense_Mutation p.K338E 0.40 tolerated_low_confidence(0.05) unknown(0) TCGA-AA-A010-01 1 248403116 248403116 G T OR2M4 Nonsense_Mutation p.E296* 0.52 TCGA-AA-A010-01 1 248436187 248436187 T G OR2T33 Missense_Mutation p.K310N 0.35 tolerated(0.22) benign(0.001) TCGA-AA-A010-01 1 248616450 248616450 C A OR2T2 Missense_Mutation p.L118I 0.14 tolerated(0.08) benign(0.254) TCGA-AA-A010-01 1 248636877 248636877 C A OR2T3 Missense_Mutation p.L76I 0.38 tolerated(0.33) benign(0.444) TCGA-AA-A010-01 1 248651935 248651935 T G OR2T5 Missense_Mutation p.F16V 0.19 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 1 248722747 248722747 A C OR2T29 Missense_Mutation p.F16V 0.13 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 1 248737422 248737422 G T OR2T34 Missense_Mutation p.L213I 0.18 deleterious(0.02) possibly_damaging(0.861) TCGA-AA-A010-01 1 248813942 248813942 G A OR2T27 Silent p.L82L 0.19 TCGA-AA-A010-01 1 249107234 249107234 C T SH3BP5L Missense_Mutation p.S222N 0.41 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 1 24978045 24978045 C T SRRM1 Missense_Mutation p.L223F 0.39 unknown(0) TCGA-AA-A010-01 1 25229111 25229111 G T RUNX3 Silent p.R264R 0.44 TCGA-AA-A010-01 1 25229135 25229135 G T RUNX3 Missense_Mutation p.F256L 0.32 tolerated(0.1) possibly_damaging(0.558) TCGA-AA-A010-01 1 25291084 25291084 G T RUNX3 5'UTR 0.35 TCGA-AA-A010-01 1 25549814 25549814 G T SYF2 Missense_Mutation p.F225L 0.36 deleterious(0.01) probably_damaging(0.91) TCGA-AA-A010-01 1 25611169 25611169 C A RHD Missense_Mutation p.A85E 0.39 deleterious(0) probably_damaging(0.953) TCGA-AA-A010-01 1 25667035 25667035 C T TMEM50A Missense_Mutation p.R20C 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 25678172 25678172 C A TMEM50A Missense_Mutation p.L88M 0.35 tolerated(0.14) benign(0.112) TCGA-AA-A010-01 1 26012988 26012988 C T MAN1C1 Missense_Mutation p.R200C 0.40 deleterious(0) possibly_damaging(0.83) TCGA-AA-A010-01 1 26156121 26156121 G T MTFR1L Missense_Mutation p.E191D 0.42 tolerated(0.33) benign(0.171) TCGA-AA-A010-01 1 26161929 26161929 C A AUNIP Missense_Mutation p.S210I 0.37 deleterious(0.04) benign(0.045) TCGA-AA-A010-01 1 26189782 26189782 C T PAQR7 Nonsense_Mutation p.W183* 0.46 TCGA-AA-A010-01 1 26230226 26230226 G T STMN1 Missense_Mutation p.S31Y 0.39 tolerated(0.06) benign(0.043) TCGA-AA-A010-01 1 26355723 26355723 C T EXTL1 Silent p.C273C 0.34 TCGA-AA-A010-01 1 26357689 26357689 G A EXTL1 Missense_Mutation p.A390T 0.39 tolerated(0.06) probably_damaging(0.962) TCGA-AA-A010-01 1 26360334 26360334 G A EXTL1 Missense_Mutation p.A556T 0.34 deleterious(0.02) benign(0.144) TCGA-AA-A010-01 1 26384948 26384948 T G TRIM63 Missense_Mutation p.K255T 0.40 tolerated(0.24) benign(0.164) TCGA-AA-A010-01 1 26448658 26448658 G T PDIK1L Nonsense_Mutation p.E206* 0.33 TCGA-AA-A010-01 1 26448762 26448762 C A PDIK1L Silent p.I240I 0.32 TCGA-AA-A010-01 1 27099430 27099430 C T ARID1A Missense_Mutation p.R1223C 0.40 unknown(0) TCGA-AA-A010-01 1 27105550 27105550 C T ARID1A Nonsense_Mutation p.R1721* 0.38 TCGA-AA-A010-01 1 27121242 27121242 C T PIGV Silent p.A239A 0.37 TCGA-AA-A010-01 1 27190688 27190688 C T SFN 3'UTR 0.39 TCGA-AA-A010-01 1 27677723 27677723 C T SYTL1 Intron 0.38 TCGA-AA-A010-01 1 28146226 28146226 C T STX12 Nonsense_Mutation p.R239* 0.35 TCGA-AA-A010-01 1 28208797 28208797 A G THEMIS2 Missense_Mutation p.Q321R 0.37 tolerated(0.19) benign(0.093) TCGA-AA-A010-01 1 28300886 28300886 G A EYA3 3'UTR 0.35 TCGA-AA-A010-01 1 28476575 28476575 C T PTAFR Missense_Mutation p.A320T 0.35 tolerated(0.72) benign(0.004) TCGA-AA-A010-01 1 28476873 28476873 C T PTAFR Silent p.Q220Q 0.30 TCGA-AA-A010-01 1 28527878 28527878 T G DNAJC8 Missense_Mutation p.S215R 0.40 deleterious(0) benign(0.296) TCGA-AA-A010-01 1 28541456 28541456 G A DNAJC8 Missense_Mutation p.R78W 0.33 deleterious(0) probably_damaging(0.949) TCGA-AA-A010-01 1 28792318 28792318 C A PHACTR4 Missense_Mutation p.L142I 0.38 deleterious(0.01) benign(0.277) TCGA-AA-A010-01 1 28864354 28864354 C T RCC1 Silent p.F398F 0.35 TCGA-AA-A010-01 1 28864405 28864405 C T RCC1 Silent p.D415D 0.33 TCGA-AA-A010-01 1 28905072 28905072 C A TRNAU1AP 3'Flank 0.42 TCGA-AA-A010-01 1 29070465 29070465 G T YTHDF2 Missense_Mutation p.E561D 0.32 deleterious(0) possibly_damaging(0.872) TCGA-AA-A010-01 1 29447333 29447333 C A TMEM200B 3'UTR 0.48 TCGA-AA-A010-01 1 29474998 29474998 G T SRSF4 Missense_Mutation p.S470Y 0.40 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 1 29652132 29652132 G A PTPRU Missense_Mutation p.D1434N 0.42 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 1 31351475 31351475 G A SDC3 Missense_Mutation p.S84L 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 1 31782975 31782975 A C ZCCHC17 Missense_Mutation p.E10D 0.44 tolerated(0.39) benign(0.001) TCGA-AA-A010-01 1 32145696 32145696 G A COL16A1 Missense_Mutation p.P873S 0.31 unknown(0) TCGA-AA-A010-01 1 32162664 32162664 C T COL16A1 Missense_Mutation p.R255H 0.40 unknown(0) TCGA-AA-A010-01 1 32163508 32163508 G A COL16A1 Missense_Mutation p.S219L 0.27 unknown(0) TCGA-AA-A010-01 1 32163710 32163710 C T COL16A1 Missense_Mutation p.D152N 0.38 unknown(0) TCGA-AA-A010-01 1 32196612 32196612 G A BAI2 Missense_Mutation p.A1390V 0.36 tolerated(0.29) benign(0.018) TCGA-AA-A010-01 1 32280128 32280128 T C SPOCD1 Silent p.G269G 0.36 TCGA-AA-A010-01 1 32280314 32280314 C A SPOCD1 Missense_Mutation p.K207N 0.37 deleterious(0.05) benign(0.245) TCGA-AA-A010-01 1 32280924 32280924 G A SPOCD1 Missense_Mutation p.A4V 0.30 deleterious(0.05) benign(0.006) TCGA-AA-A010-01 1 32374363 32374363 G T PTP4A2 3'UTR 0.38 TCGA-AA-A010-01 1 32508245 32508245 A C KHDRBS1 3'UTR 0.40 TCGA-AA-A010-01 1 32745214 32745214 G T LCK Intron 0.34 TCGA-AA-A010-01 1 32798725 32798725 C A HDAC1 3'UTR 0.31 TCGA-AA-A010-01 1 3321429 3321429 C T PRDM16 Silent p.F337F 0.41 TCGA-AA-A010-01 1 3328657 3328657 C T PRDM16 Silent p.D632D 0.36 TCGA-AA-A010-01 1 33625383 33625383 G A TRIM62 Missense_Mutation p.R223C 0.36 deleterious(0.03) possibly_damaging(0.855) TCGA-AA-A010-01 1 33790434 33790434 G A PHC2 3'UTR 0.24 TCGA-AA-A010-01 1 3392589 3392589 A G ARHGEF16 Missense_Mutation p.Y479C 0.31 tolerated(0.16) benign(0.062) TCGA-AA-A010-01 1 33960902 33960902 G A ZSCAN20 Silent p.P986P 0.42 TCGA-AA-A010-01 1 33987079 33987079 G A CSMD2 Silent p.F3383F 0.37 TCGA-AA-A010-01 1 34046429 34046429 G T CSMD2 Missense_Mutation p.S2439R 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 34080145 34080145 T C CSMD2 Missense_Mutation p.N1991S 0.31 tolerated(0.31) possibly_damaging(0.553) TCGA-AA-A010-01 1 34112312 34112312 G A CSMD2 Silent p.S1530S 0.33 TCGA-AA-A010-01 1 3413892 3413892 G A MEGF6 Missense_Mutation p.A1129V 0.45 tolerated(0.09) benign(0.044) TCGA-AA-A010-01 1 34208883 34208883 G A CSMD2 Missense_Mutation p.T684I 0.26 deleterious(0) probably_damaging(0.917) TCGA-AA-A010-01 1 34666589 34666589 C T C1orf94 Missense_Mutation p.P409L 0.32 tolerated_low_confidence(1) benign(0.001) TCGA-AA-A010-01 1 34684445 34684445 T C C1orf94 3'UTR 0.27 TCGA-AA-A010-01 1 35261057 35261057 G T GJA4 3'UTR 0.38 TCGA-AA-A010-01 1 35334239 35334239 G A DLGAP3 Missense_Mutation p.R818C 0.40 deleterious(0) probably_damaging(0.947) TCGA-AA-A010-01 1 35365760 35365760 C A DLGAP3 Missense_Mutation p.D408Y 0.43 deleterious(0) possibly_damaging(0.601) TCGA-AA-A010-01 1 35370319 35370319 G T DLGAP3 Silent p.S222S 0.39 TCGA-AA-A010-01 1 35478183 35478183 C A ZMYM6 Splice_Site p.X266_splice 0.35 TCGA-AA-A010-01 1 35484947 35484947 T G ZMYM6 Intron 0.39 TCGA-AA-A010-01 1 35579468 35579468 C A ZMYM1 Missense_Mutation p.F679L 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 1 35579880 35579880 C T ZMYM1 Silent p.L817L 0.37 TCGA-AA-A010-01 1 35652648 35652648 C T SFPQ Missense_Mutation p.G647D 0.29 deleterious(0.03) probably_damaging(0.959) TCGA-AA-A010-01 1 35652836 35652836 C T SFPQ Missense_Mutation p.R611Q 0.39 deleterious(0) possibly_damaging(0.602) TCGA-AA-A010-01 1 35936556 35936556 T G KIAA0319L Missense_Mutation p.T341P 0.33 tolerated(0.16) possibly_damaging(0.486) TCGA-AA-A010-01 1 36023696 36023696 C T NCDN 5'UTR 0.47 TCGA-AA-A010-01 1 36358783 36358783 G A AGO1 Missense_Mutation p.R139Q 0.41 tolerated(0.47) benign(0.003) TCGA-AA-A010-01 1 36563453 36563453 C G COL8A2 Missense_Mutation p.G610A 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 36605758 36605758 G A TRAPPC3 Missense_Mutation p.L18F 0.36 tolerated(0.06) possibly_damaging(0.689) TCGA-AA-A010-01 1 3670736 3670736 C T CCDC27 Nonsense_Mutation p.R125* 0.44 TCGA-AA-A010-01 1 3673354 3673354 G T CCDC27 Missense_Mutation p.R204I 0.35 deleterious(0) benign(0) TCGA-AA-A010-01 1 36755144 36755144 C T THRAP3 Silent p.S508S 0.34 TCGA-AA-A010-01 1 36785450 36785450 G T SH3D21 Missense_Mutation p.A396S 0.32 deleterious(0.01) benign(0.116) TCGA-AA-A010-01 1 36785773 36785773 C A SH3D21 Missense_Mutation p.F503L 0.39 tolerated(1) benign(0.002) TCGA-AA-A010-01 1 36938264 36938264 G A CSF3R Missense_Mutation p.R233W 0.39 tolerated(0.15) benign(0.003) TCGA-AA-A010-01 1 3747758 3747758 G T CEP104 Missense_Mutation p.S563Y 0.32 deleterious(0) possibly_damaging(0.847) TCGA-AA-A010-01 1 3751576 3751576 A T CEP104 Silent p.P466P 0.36 TCGA-AA-A010-01 1 3765182 3765182 G A CEP104 Nonsense_Mutation p.R93* 0.37 TCGA-AA-A010-01 1 3765296 3765296 G A CEP104 Nonsense_Mutation p.R55* 0.33 TCGA-AA-A010-01 1 37967422 37967422 C A MEAF6 Missense_Mutation p.K172N 0.27 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AA-A010-01 1 38019629 38019629 T G SNIP1 Missense_Mutation p.N68H 0.38 tolerated_low_confidence(0.15) benign(0.259) TCGA-AA-A010-01 1 38019787 38019787 C A SNIP1 Missense_Mutation p.R15I 0.30 deleterious_low_confidence(0) benign(0.308) TCGA-AA-A010-01 1 38023326 38023326 C A DNALI1 Silent p.I90I 0.29 TCGA-AA-A010-01 1 38032456 38032456 T G GNL2 Nonstop_Mutation p.*732Yext*7 0.39 TCGA-AA-A010-01 1 38033907 38033907 T C GNL2 Silent p.R640R 0.39 TCGA-AA-A010-01 1 38041276 38041276 G A GNL2 Missense_Mutation p.R355C 0.41 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 1 38058329 38058329 T C GNL2 Silent p.P76P 0.39 TCGA-AA-A010-01 1 3807157 3807157 G T C1orf174 Missense_Mutation p.F198L 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 38158310 38158310 T G CDCA8 5'UTR 0.38 TCGA-AA-A010-01 1 38272688 38272688 A C C1orf122 5'Flank 0.46 TCGA-AA-A010-01 1 39325220 39325220 C A RRAGC Missense_Mutation p.E33D 0.43 tolerated(0.65) benign(0.014) TCGA-AA-A010-01 1 39550069 39550069 C T MACF1 Missense_Mutation p.S60L 0.37 possibly_damaging(0.895) TCGA-AA-A010-01 1 39749132 39749132 C T MACF1 Missense_Mutation p.S292L 0.36 probably_damaging(0.98) TCGA-AA-A010-01 1 39800216 39800216 C A MACF1 Intron 0.27 TCGA-AA-A010-01 1 39801102 39801102 G T MACF1 Intron 0.38 TCGA-AA-A010-01 1 39844937 39844937 G T MACF1 Missense_Mutation p.V2385L 0.38 benign(0.002) TCGA-AA-A010-01 1 39876473 39876473 C A KIAA0754 Missense_Mutation p.S43Y 0.34 possibly_damaging(0.781) TCGA-AA-A010-01 1 39879036 39879037 - C KIAA0754 Frame_Shift_Ins p.E901Rfs*190 0.23 TCGA-AA-A010-01 1 39989305 39989305 C A BMP8A Intron 0.30 TCGA-AA-A010-01 1 40038253 40038253 G A PABPC4 Missense_Mutation p.R67W 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A010-01 1 40126793 40126793 G A NT5C1A Silent p.F233F 0.40 TCGA-AA-A010-01 1 40148054 40148054 C A HPCAL4 3'UTR 0.33 TCGA-AA-A010-01 1 40214723 40214723 C T PPIE Silent p.F219F 0.31 TCGA-AA-A010-01 1 40307572 40307572 G T TRIT1 Silent p.S416S 0.41 TCGA-AA-A010-01 1 40363565 40363565 G A MYCL Nonsense_Mutation p.R222* 0.40 TCGA-AA-A010-01 1 40432596 40432596 G A MFSD2A Missense_Mutation p.A320T 0.39 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 1 40717011 40717011 T G TMCO2 Missense_Mutation p.I98M 0.43 deleterious_low_confidence(0.02) benign(0.07) TCGA-AA-A010-01 1 40782895 40782895 G A COL9A2 5'UTR 0.48 TCGA-AA-A010-01 1 40875482 40875482 G A SMAP2 Missense_Mutation p.R126Q 0.35 deleterious(0.02) probably_damaging(0.948) TCGA-AA-A010-01 1 40881994 40881994 G A SMAP2 Silent p.T276T 0.33 TCGA-AA-A010-01 1 40929238 40929238 A C ZFP69B Missense_Mutation p.N528H 0.39 deleterious_low_confidence(0) benign(0.352) TCGA-AA-A010-01 1 40981435 40981435 T C EXO5 3'UTR 0.35 TCGA-AA-A010-01 1 41107474 41107474 C T RIMS3 Missense_Mutation p.A42T 0.39 tolerated_low_confidence(1) benign(0.012) TCGA-AA-A010-01 1 41284190 41284190 C T KCNQ4 Silent p.F182F 0.43 TCGA-AA-A010-01 1 41454346 41454346 G T CTPS1 Missense_Mutation p.E173D 0.37 tolerated(0.34) benign(0.042) TCGA-AA-A010-01 1 41467887 41467887 G T CTPS1 Missense_Mutation p.A384S 0.43 deleterious(0.03) benign(0.2) TCGA-AA-A010-01 1 41473204 41473204 G A CTPS1 Silent p.K460K 0.36 TCGA-AA-A010-01 1 41483375 41483375 A C SLFNL1 Missense_Mutation p.F297V 0.28 deleterious(0) possibly_damaging(0.752) TCGA-AA-A010-01 1 41950314 41950314 C T EDN2 5'UTR 0.39 TCGA-AA-A010-01 1 41984123 41984123 C T HIVEP3 Missense_Mutation p.S1807N 0.44 possibly_damaging(0.828) TCGA-AA-A010-01 1 41984135 41984135 G A HIVEP3 Missense_Mutation p.S1803L 0.45 probably_damaging(0.996) TCGA-AA-A010-01 1 42049977 42049977 G A HIVEP3 Silent p.F164F 0.38 TCGA-AA-A010-01 1 42050273 42050273 G T HIVEP3 Missense_Mutation p.L66I 0.36 benign(0.237) TCGA-AA-A010-01 1 42050305 42050305 G A HIVEP3 Missense_Mutation p.A55V 0.39 benign(0.008) TCGA-AA-A010-01 1 42629216 42629216 C T GUCA2A Silent p.E47E 0.32 TCGA-AA-A010-01 1 43011224 43011224 C T CCDC30 Silent p.S133S 0.34 TCGA-AA-A010-01 1 43200865 43200865 G A CLDN19 Intron 0.43 TCGA-AA-A010-01 1 43221252 43221252 A C LEPRE1 Silent p.A379A 0.33 TCGA-AA-A010-01 1 43315255 43315255 G T ZNF691 5'UTR 0.34 TCGA-AA-A010-01 1 43317556 43317556 C A ZNF691 3'UTR 0.39 TCGA-AA-A010-01 1 43318108 43318108 T C ZNF691 3'Flank 0.32 TCGA-AA-A010-01 1 43636509 43636509 C T EBNA1BP2 Missense_Mutation p.R177H 0.34 deleterious(0.04) benign(0.301) TCGA-AA-A010-01 1 43675687 43675687 C A WDR65 Missense_Mutation p.L677I 0.36 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-AA-A010-01 1 43783698 43783698 C T TIE1 Silent p.F959F 0.43 TCGA-AA-A010-01 1 43897953 43897953 G A SZT2 Missense_Mutation p.R1705H 0.35 tolerated(0.06) benign(0.006) TCGA-AA-A010-01 1 43917630 43917630 A G HYI Missense_Mutation p.Y161H 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 1 43917991 43917991 C T HYI Splice_Site p.X104_splice 0.34 TCGA-AA-A010-01 1 44086156 44086156 G A PTPRF Missense_Mutation p.R1757H 0.37 deleterious(0.03) probably_damaging(0.974) TCGA-AA-A010-01 1 44443956 44443956 T G ATP6V0B 3'UTR 0.75 TCGA-AA-A010-01 1 44450592 44450592 C T B4GALT2 Missense_Mutation p.A231V 0.37 deleterious(0.01) possibly_damaging(0.612) TCGA-AA-A010-01 1 44451230 44451230 G A B4GALT2 Missense_Mutation p.R331Q 0.41 tolerated(0.58) benign(0.427) TCGA-AA-A010-01 1 44461273 44461273 C T CCDC24 Missense_Mutation p.R185C 0.43 tolerated(0.25) benign(0.002) TCGA-AA-A010-01 1 44463391 44463391 C T SLC6A9 Silent p.K649K 0.34 TCGA-AA-A010-01 1 45221891 45221891 C T KIF2C Missense_Mutation p.S320L 0.38 deleterious(0) possibly_damaging(0.763) TCGA-AA-A010-01 1 45252208 45252208 G T BEST4 Silent p.S136S 0.47 TCGA-AA-A010-01 1 45293335 45293335 C T PTCH2 Missense_Mutation p.A704T 0.37 tolerated(1) benign(0.001) TCGA-AA-A010-01 1 45811115 45811115 G T TESK2 Silent p.I371I 0.30 TCGA-AA-A010-01 1 46079809 46079809 G A NASP Silent p.E516E 0.31 TCGA-AA-A010-01 1 46086658 46086658 G T CCDC17 Missense_Mutation p.L506I 0.34 deleterious(0.05) probably_damaging(0.982) TCGA-AA-A010-01 1 46089416 46089416 G A CCDC17 Missense_Mutation p.R56W 0.34 deleterious(0.02) possibly_damaging(0.471) TCGA-AA-A010-01 1 46500505 46500505 C T MAST2 Silent p.L1388L 0.34 TCGA-AA-A010-01 1 46500836 46500836 C T MAST2 Missense_Mutation p.R1499C 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A010-01 1 46500978 46500978 C A MAST2 Missense_Mutation p.P1546H 0.30 deleterious_low_confidence(0.01) benign(0.004) TCGA-AA-A010-01 1 46654629 46654629 A C POMGNT1 Missense_Mutation p.F670C 0.25 benign(0.029) TCGA-AA-A010-01 1 46656106 46656106 C A POMGNT1 Intron 0.34 TCGA-AA-A010-01 1 46860005 46860005 G A FAAH 5'UTR 0.59 TCGA-AA-A010-01 1 47059871 47059871 C A MKNK1 5'UTR 0.40 TCGA-AA-A010-01 1 47138991 47138991 C A TEX38 Missense_Mutation p.L162I 0.38 deleterious(0.05) benign(0.191) TCGA-AA-A010-01 1 47264904 47264904 A G CYP4B1 Missense_Mutation p.T51A 0.36 tolerated(0.56) benign(0.009) TCGA-AA-A010-01 1 47338920 47338920 G A CYP4Z2P RNA 0.46 TCGA-AA-A010-01 1 47548005 47548005 G A CYP4Z1 Splice_Site p.X122_splice 0.38 TCGA-AA-A010-01 1 47608985 47608985 C A CYP4A22 Silent p.V185V 0.38 TCGA-AA-A010-01 1 47649631 47649631 C T PDZK1IP1 3'UTR 0.40 TCGA-AA-A010-01 1 47767292 47767292 C A STIL Nonsense_Mutation p.E132* 0.41 TCGA-AA-A010-01 1 47834243 47834243 G T CMPK1 Nonsense_Mutation p.G92* 0.35 TCGA-AA-A010-01 1 4829940 4829940 T C AJAP1 Missense_Mutation p.I286T 0.39 deleterious(0.02) benign(0.015) TCGA-AA-A010-01 1 4832513 4832513 C A AJAP1 Missense_Mutation p.S364Y 0.41 deleterious(0.02) possibly_damaging(0.641) TCGA-AA-A010-01 1 49224790 49224790 G T BEND5 Missense_Mutation p.A176D 0.45 tolerated(0.35) possibly_damaging(0.725) TCGA-AA-A010-01 1 50666606 50666606 T C ELAVL4 Missense_Mutation p.F303S 0.37 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 1 51613337 51613337 C A C1orf185 Missense_Mutation p.S165Y 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.735) TCGA-AA-A010-01 1 51735722 51735722 G T RNF11 Missense_Mutation p.R73I 0.35 deleterious(0.01) possibly_damaging(0.53) TCGA-AA-A010-01 1 51768230 51768230 T C TTC39A Missense_Mutation p.N264S 0.36 deleterious(0.04) benign(0.036) TCGA-AA-A010-01 1 51887524 51887524 C A EPS15 Missense_Mutation p.K349N 0.46 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 1 52211221 52211221 G T OSBPL9 Missense_Mutation p.G134V 0.32 tolerated(0.15) possibly_damaging(0.616) TCGA-AA-A010-01 1 52255243 52255243 A G NRD1 Silent p.V1153V 0.34 TCGA-AA-A010-01 1 52705016 52705016 G A ZFYVE9 Missense_Mutation p.D643N 0.41 tolerated(0.07) benign(0.02) TCGA-AA-A010-01 1 52761568 52761568 T G ZFYVE9 Silent p.L1084L 0.42 TCGA-AA-A010-01 1 52822076 52822076 G A CC2D1B Silent p.G645G 0.45 TCGA-AA-A010-01 1 52924120 52924120 C T ZCCHC11 Missense_Mutation p.R1108Q 0.30 tolerated(0.17) possibly_damaging(0.778) TCGA-AA-A010-01 1 52961119 52961119 C A ZCCHC11 Missense_Mutation p.D416Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 52962691 52962691 C T ZCCHC11 Silent p.T388T 0.31 TCGA-AA-A010-01 1 52981601 52981601 C A ZCCHC11 Nonsense_Mutation p.E282* 0.33 TCGA-AA-A010-01 1 52991241 52991241 C T ZCCHC11 Missense_Mutation p.D238N 0.32 deleterious_low_confidence(0.01) benign(0.27) TCGA-AA-A010-01 1 52991700 52991700 C A ZCCHC11 Missense_Mutation p.D85Y 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A010-01 1 53245657 53245657 A C ZYG11B Missense_Mutation p.I362L 0.32 tolerated(0.1) benign(0.005) TCGA-AA-A010-01 1 53546514 53546514 G A PODN Missense_Mutation p.D591N 0.28 tolerated(0.54) benign(0.013) TCGA-AA-A010-01 1 53974950 53974950 G A GLIS1 Silent p.G516G 0.33 TCGA-AA-A010-01 1 54266421 54266421 C T NDC1 Silent p.T389T 0.27 TCGA-AA-A010-01 1 54477855 54477855 T G LDLRAD1 Missense_Mutation p.T101P 0.41 deleterious(0.04) possibly_damaging(0.89) TCGA-AA-A010-01 1 55331069 55331069 C A DHCR24 Missense_Mutation p.E309D 0.40 deleterious(0.01) probably_damaging(0.928) TCGA-AA-A010-01 1 55505456 55505456 C G PCSK9 5'UTR 0.34 TCGA-AA-A010-01 1 55537534 55537534 A G USP24 Missense_Mutation p.S2585P 0.27 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-AA-A010-01 1 57159484 57159484 C T PRKAA2 Silent p.C174C 0.31 TCGA-AA-A010-01 1 57185894 57185894 C T C1orf168 Missense_Mutation p.D695N 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 57219593 57219631 ATCTTCATGTTTAGCACTGAAATGTGAAGAGATACCAGG TATCTTCATGTTTAGCACTGAAATGTGAAGAGATACCAGGA C1orf168 Splice_Site p.X377_splice 0.11 TCGA-AA-A010-01 1 57372354 57372354 G T C8A Missense_Mutation p.D371Y 0.35 tolerated(0.06) possibly_damaging(0.702) TCGA-AA-A010-01 1 57602245 57602245 C A DAB1 Nonsense_Mutation p.G93* 0.33 TCGA-AA-A010-01 1 58946769 58946769 C T OMA1 Silent p.T481T 0.28 TCGA-AA-A010-01 1 59042084 59042084 C A TACSTD2 Nonsense_Mutation p.E249* 0.42 TCGA-AA-A010-01 1 59805663 59805663 C T FGGY Nonsense_Mutation p.R79* 0.40 TCGA-AA-A010-01 1 60328469 60328469 C T HOOK1 Missense_Mutation p.R516C 0.40 deleterious(0) benign(0.015) TCGA-AA-A010-01 1 61543147 61543147 A C NFIA 5'Flank 0.56 TCGA-AA-A010-01 1 61543245 61543245 A G NFIA 5'Flank 0.42 TCGA-AA-A010-01 1 6184669 6184669 C T CHD5 Missense_Mutation p.A1483T 0.36 deleterious(0.03) possibly_damaging(0.673) TCGA-AA-A010-01 1 61848939 61848939 C T NFIA Missense_Mutation p.S371L 0.27 tolerated(0.21) benign(0.001) TCGA-AA-A010-01 1 61892174 61892174 C T NFIA Silent p.F531F 0.30 TCGA-AA-A010-01 1 62232067 62232067 G A INADL Silent p.S102S 0.33 TCGA-AA-A010-01 1 62672582 62672582 G T L1TD1 Missense_Mutation p.E94D 0.44 tolerated(0.26) unknown(0) TCGA-AA-A010-01 1 6270982 6270982 C A RNF207 Missense_Mutation p.P332H 0.33 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 1 62718830 62718830 A G KANK4 Missense_Mutation p.I864T 0.42 deleterious(0) possibly_damaging(0.803) TCGA-AA-A010-01 1 62939678 62939678 G T DOCK7 Missense_Mutation p.L2032I 0.28 deleterious(0.01) benign(0.206) TCGA-AA-A010-01 1 62943543 62943543 C A DOCK7 Intron 0.32 TCGA-AA-A010-01 1 6399564 6399564 G A ACOT7 Missense_Mutation p.A126V 0.41 deleterious(0) probably_damaging(0.962) TCGA-AA-A010-01 1 64669611 64669611 C A UBE2U 5'UTR 0.21 TCGA-AA-A010-01 1 64671387 64671387 G T UBE2U Missense_Mutation p.Q44H 0.34 deleterious(0.04) benign(0.157) TCGA-AA-A010-01 1 65068538 65068538 C T CACHD1 Nonsense_Mutation p.R103* 0.34 TCGA-AA-A010-01 1 65278472 65278472 C T RAVER2 Missense_Mutation p.R565W 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 1 6533389 6533389 G A PLEKHG5 Silent p.G318G 0.36 TCGA-AA-A010-01 1 65691785 65691785 G A AK4 Silent p.T199T 0.37 TCGA-AA-A010-01 1 65858281 65858281 G A DNAJC6 Missense_Mutation p.A546T 0.34 tolerated(0.28) benign(0.004) TCGA-AA-A010-01 1 66036155 66036155 G T LEPR Splice_Site p.X14_splice 0.27 TCGA-AA-A010-01 1 6634953 6634953 A G TAS1R1 Missense_Mutation p.E254G 0.38 tolerated(0.2) benign(0.008) TCGA-AA-A010-01 1 67412054 67412054 C A MIER1 Intron 0.31 TCGA-AA-A010-01 1 67442325 67442326 - A MIER1 Frame_Shift_Ins p.S386Ifs*2 0.28 TCGA-AA-A010-01 1 67452188 67452188 C T MIER1 3'Flank 0.25 TCGA-AA-A010-01 1 67452274 67452274 C T MIER1 3'Flank 0.11 TCGA-AA-A010-01 1 67558979 67558979 C T C1orf141 Silent p.Q304Q 0.45 TCGA-AA-A010-01 1 67561057 67561057 G A C1orf141 Missense_Mutation p.S155L 0.35 tolerated(0.13) benign(0) TCGA-AA-A010-01 1 67724321 67724321 C T IL23R Missense_Mutation p.S467L 0.36 deleterious(0.01) benign(0.018) TCGA-AA-A010-01 1 67724483 67724483 A T IL23R Missense_Mutation p.N521I 0.34 deleterious(0) benign(0.196) TCGA-AA-A010-01 1 67838312 67838312 A C IL12RB2 Silent p.P521P 0.37 TCGA-AA-A010-01 1 67861690 67861690 C A IL12RB2 Missense_Mutation p.S836Y 0.31 deleterious(0) possibly_damaging(0.655) TCGA-AA-A010-01 1 68512160 68512160 C A DIRAS3 3'UTR 0.37 TCGA-AA-A010-01 1 68910221 68910221 A C RPE65 Missense_Mutation p.I163S 0.36 tolerated(0.88) possibly_damaging(0.504) TCGA-AA-A010-01 1 68912537 68912537 A G RPE65 Missense_Mutation p.I34T 0.36 deleterious(0) possibly_damaging(0.57) TCGA-AA-A010-01 1 69811 69811 C A OR4F5 Missense_Mutation p.L241I 0.47 tolerated(0.38) benign(0.126) TCGA-AA-A010-01 1 70452064 70452064 C A LRRC7 Missense_Mutation p.S271Y 0.39 deleterious(0) possibly_damaging(0.73) TCGA-AA-A010-01 1 70502264 70502264 A G LRRC7 Missense_Mutation p.T711A 0.45 tolerated_low_confidence(0.35) benign(0.002) TCGA-AA-A010-01 1 70504370 70504370 G A LRRC7 Missense_Mutation p.E917K 0.39 deleterious(0.02) benign(0.033) TCGA-AA-A010-01 1 70504471 70504471 C T LRRC7 Silent p.I950I 0.36 TCGA-AA-A010-01 1 71512563 71512563 G A PTGER3 Missense_Mutation p.A233V 0.35 tolerated(0.16) benign(0.314) TCGA-AA-A010-01 1 71532566 71532566 A G ZRANB2 Silent p.Y274Y 0.33 TCGA-AA-A010-01 1 74621523 74621523 T A LRRIQ3 Missense_Mutation p.N201Y 0.31 deleterious(0.01) possibly_damaging(0.73) TCGA-AA-A010-01 1 76190395 76190395 G T ACADM 5'Flank 0.36 TCGA-AA-A010-01 1 76198595 76198595 C A ACADM Missense_Mutation p.P96T 0.32 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 1 76262814 76262814 C T MSH4 Silent p.V48V 0.45 TCGA-AA-A010-01 1 76272778 76272778 C A MSH4 Missense_Mutation p.N180K 0.30 tolerated(0.6) benign(0.063) TCGA-AA-A010-01 1 76343855 76343855 G T MSH4 Missense_Mutation p.K464N 0.30 deleterious(0.01) benign(0.314) TCGA-AA-A010-01 1 77883340 77883340 T C AK5 Silent p.D333D 0.28 TCGA-AA-A010-01 1 77984363 77984363 G T AK5 Missense_Mutation p.R421I 0.35 deleterious(0) probably_damaging(0.985) TCGA-AA-A010-01 1 78041799 78041799 C T ZZZ3 Missense_Mutation p.R762Q 0.36 tolerated(0.06) benign(0.28) TCGA-AA-A010-01 1 78105173 78105173 C A ZZZ3 5'UTR 0.37 TCGA-AA-A010-01 1 78163131 78163131 T G USP33 Missense_Mutation p.E900D 0.37 tolerated(0.17) probably_damaging(0.997) TCGA-AA-A010-01 1 78191364 78191364 C T USP33 Missense_Mutation p.A438T 0.41 tolerated(0.12) benign(0.006) TCGA-AA-A010-01 1 78390906 78390906 G T NEXN Missense_Mutation p.A161S 0.37 tolerated(0.31) benign(0.081) TCGA-AA-A010-01 1 78601414 78601414 G A GIPC2 Missense_Mutation p.R312Q 0.30 tolerated(1) benign(0.001) TCGA-AA-A010-01 1 7863943 7863943 C A PER3 Intron 0.34 TCGA-AA-A010-01 1 78963566 78963566 G T PTGFR Intron 0.32 TCGA-AA-A010-01 1 79101057 79101057 A G IFI44L Silent p.G253G 0.23 TCGA-AA-A010-01 1 79403500 79403500 G A ELTD1 Missense_Mutation p.T251M 0.20 deleterious(0.01) possibly_damaging(0.832) TCGA-AA-A010-01 1 82416076 82416076 T C LPHN2 Missense_Mutation p.F468L 0.42 tolerated(0.18) benign(0.197) TCGA-AA-A010-01 1 82456626 82456626 G A LPHN2 Missense_Mutation p.D1337N 0.37 tolerated_low_confidence(0.11) possibly_damaging(0.772) TCGA-AA-A010-01 1 8390374 8390374 C T SLC45A1 Missense_Mutation p.A274V 0.36 tolerated(0.11) possibly_damaging(0.593) TCGA-AA-A010-01 1 84335661 84335661 C A TTLL7 Missense_Mutation p.R883I 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 1 84417978 84417978 G T TTLL7 5'UTR 0.32 TCGA-AA-A010-01 1 85112962 85112962 G T SSX2IP 3'UTR 0.33 TCGA-AA-A010-01 1 85113204 85113204 G A SSX2IP Missense_Mutation p.A586V 0.35 tolerated_low_confidence(0.43) benign(0.001) TCGA-AA-A010-01 1 85395248 85395248 G A MCOLN2 Missense_Mutation p.R553W 0.37 tolerated(0.16) benign(0.001) TCGA-AA-A010-01 1 85405325 85405325 C A MCOLN2 Nonsense_Mutation p.E341* 0.40 TCGA-AA-A010-01 1 85488215 85488215 C A MCOLN3 Intron 0.37 TCGA-AA-A010-01 1 85494857 85494857 C A MCOLN3 Missense_Mutation p.R255I 0.33 deleterious(0.05) benign(0.271) TCGA-AA-A010-01 1 85499851 85499851 C A MCOLN3 Missense_Mutation p.Q160H 0.39 deleterious(0.05) benign(0.013) TCGA-AA-A010-01 1 85510865 85510865 G T MCOLN3 Missense_Mutation p.P60Q 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 85595793 85595793 G A WDR63 Missense_Mutation p.V844I 0.35 tolerated(0.47) benign(0.001) TCGA-AA-A010-01 1 85648622 85648622 T C SYDE2 Missense_Mutation p.E568G 0.38 tolerated(0.1) benign(0.008) TCGA-AA-A010-01 1 85718353 85718353 G A C1orf52 Missense_Mutation p.R170C 0.35 tolerated(0.06) benign(0.011) TCGA-AA-A010-01 1 85736412 85736412 G T BCL10 Missense_Mutation p.L79M 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 1 86144405 86144405 G T ZNHIT6 Missense_Mutation p.S383Y 0.38 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 1 8617492 8617492 G A RERE Nonsense_Mutation p.R205* 0.24 TCGA-AA-A010-01 1 86196342 86196342 G A COL24A1 Missense_Mutation p.L1678F 0.30 tolerated(0.58) benign(0.046) TCGA-AA-A010-01 1 86850466 86850466 T G ODF2L Missense_Mutation p.N89H 0.42 deleterious(0.01) possibly_damaging(0.807) TCGA-AA-A010-01 1 86959126 86959126 G A CLCA1 Silent p.V508V 0.40 TCGA-AA-A010-01 1 87025728 87025728 A C CLCA4 Missense_Mutation p.K91N 0.32 tolerated(0.49) possibly_damaging(0.487) TCGA-AA-A010-01 1 87036853 87036853 G A CLCA4 Missense_Mutation p.V426M 0.24 deleterious(0.02) probably_damaging(0.941) TCGA-AA-A010-01 1 89448518 89448518 C T RBMXL1 Missense_Mutation p.R331Q 0.35 tolerated(0.16) benign(0.007) TCGA-AA-A010-01 1 89659057 89659057 A G GBP4 Silent p.A134A 0.35 TCGA-AA-A010-01 1 89729594 89729594 C T GBP5 Missense_Mutation p.R396Q 0.39 tolerated(1) benign(0.004) TCGA-AA-A010-01 1 89846021 89846021 C T GBP6 Silent p.F234F 0.22 TCGA-AA-A010-01 1 89846022 89846022 G A GBP6 Missense_Mutation p.V235I 0.47 tolerated(0.41) benign(0.244) TCGA-AA-A010-01 1 89849751 89849751 G A GBP6 Missense_Mutation p.R523H 0.35 tolerated(0.6) benign(0) TCGA-AA-A010-01 1 898773 898773 C T KLHL17 Missense_Mutation p.T415M 0.32 tolerated(0.06) possibly_damaging(0.839) TCGA-AA-A010-01 1 90482907 90482907 C T ZNF326 Nonsense_Mutation p.R320* 0.25 TCGA-AA-A010-01 1 9107724 9107724 G A SLC2A5 Silent p.V121V 0.26 TCGA-AA-A010-01 1 9117644 9117644 C A SLC2A5 Missense_Mutation p.E52D 0.41 tolerated(0.17) benign(0.002) TCGA-AA-A010-01 1 91382285 91382285 T C ZNF644 3'UTR 0.26 TCGA-AA-A010-01 1 91784881 91784881 C A HFM1 Missense_Mutation p.K883N 0.45 deleterious(0.04) possibly_damaging(0.824) TCGA-AA-A010-01 1 91844691 91844691 C A HFM1 Nonsense_Mutation p.E363* 0.30 TCGA-AA-A010-01 1 92446926 92446926 C T BRDT Missense_Mutation p.R618C 0.39 tolerated(0.13) benign(0) TCGA-AA-A010-01 1 92528676 92528676 G A EPHX4 Missense_Mutation p.A308T 0.33 tolerated(0.19) possibly_damaging(0.448) TCGA-AA-A010-01 1 92801968 92801968 C A RPAP2 Missense_Mutation p.L535I 0.39 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 1 92948430 92948430 C T GFI1 Missense_Mutation p.A97T 0.46 tolerated_low_confidence(0.09) benign(0.012) TCGA-AA-A010-01 1 93091446 93091446 C A EVI5 Nonsense_Mutation p.E509* 0.35 TCGA-AA-A010-01 1 93170186 93170186 C A EVI5 Missense_Mutation p.D133Y 0.42 deleterious(0) probably_damaging(0.962) TCGA-AA-A010-01 1 93575850 93575850 G T MTF2 Missense_Mutation p.K23N 0.34 tolerated(0.39) benign(0.209) TCGA-AA-A010-01 1 93672795 93672795 A C CCDC18 Missense_Mutation p.K404T 0.37 deleterious(0) probably_damaging(0.913) TCGA-AA-A010-01 1 93711663 93711663 G T CCDC18 Nonsense_Mutation p.E1048* 0.41 TCGA-AA-A010-01 1 94012483 94012483 G A FNBP1L Silent p.E453E 0.21 TCGA-AA-A010-01 1 94079488 94079488 C A BCAR3 Intron 0.41 TCGA-AA-A010-01 1 94342047 94342047 G T DNTTIP2 Missense_Mutation p.L482M 0.36 tolerated(0.2) benign(0.001) TCGA-AA-A010-01 1 94342647 94342647 C T DNTTIP2 Missense_Mutation p.E282K 0.31 tolerated(1) benign(0) TCGA-AA-A010-01 1 94362331 94362331 G A GCLM Missense_Mutation p.A128V 0.48 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 1 94467365 94467365 G T ABCA4 Intron 0.36 TCGA-AA-A010-01 1 94480237 94480237 G T ABCA4 Silent p.V1774V 0.25 TCGA-AA-A010-01 1 94546200 94546200 G T ABCA4 Silent p.T311T 0.43 TCGA-AA-A010-01 1 94643197 94643197 G A ARHGAP29 Missense_Mutation p.A959V 0.56 tolerated(0.16) benign(0.004) TCGA-AA-A010-01 1 94667365 94667365 C A ARHGAP29 Nonsense_Mutation p.E398* 0.26 TCGA-AA-A010-01 1 95330337 95330337 C T SLC44A3 Missense_Mutation p.S426F 0.31 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 1 95392550 95392550 C T CNN3 5'UTR 0.54 TCGA-AA-A010-01 1 95712463 95712463 T C RWDD3 3'UTR 0.36 TCGA-AA-A010-01 1 9642608 9642608 G A SLC25A33 3'UTR 0.38 TCGA-AA-A010-01 1 9713785 9713785 T G C1orf200 3'UTR 0.33 TCGA-AA-A010-01 1 97235266 97235266 T C PTBP2 Silent p.G41G 0.41 TCGA-AA-A010-01 1 97243177 97243177 C A PTBP2 Missense_Mutation p.Q157K 0.41 tolerated(0.11) possibly_damaging(0.543) TCGA-AA-A010-01 1 9791277 9791277 A G CLSTN1 Missense_Mutation p.V912A 0.29 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 1 9795966 9795966 C T CLSTN1 Missense_Mutation p.E571K 0.37 deleterious(0.03) benign(0.005) TCGA-AA-A010-01 1 98060694 98060694 G T DPYD Silent p.I293I 0.30 TCGA-AA-A010-01 1 980867 980867 C T AGRN Nonsense_Mutation p.R834* 0.36 TCGA-AA-A010-01 1 9910522 9910522 G T CTNNBIP1 3'UTR 0.30 TCGA-AA-A010-01 20 10393532 10393532 C A MKKS Missense_Mutation p.D211Y 0.24 deleterious(0) possibly_damaging(0.906) TCGA-AA-A010-01 20 10621476 10621476 C T JAG1 Missense_Mutation p.V1052I 0.42 tolerated(0.42) benign(0.002) TCGA-AA-A010-01 20 1115679 1115679 G A PSMF1 Intron 0.50 TCGA-AA-A010-01 20 1209175 1209175 A G RAD21L1 Silent p.K26K 0.36 TCGA-AA-A010-01 20 1209230 1209230 C A RAD21L1 Missense_Mutation p.L45I 0.38 tolerated(1) benign(0.024) TCGA-AA-A010-01 20 1226876 1226876 C A RAD21L1 Missense_Mutation p.S444Y 0.69 deleterious(0.03) benign(0.006) TCGA-AA-A010-01 20 126269 126269 C A DEFB126 Missense_Mutation p.T91N 0.39 tolerated(0.2) unknown(0) TCGA-AA-A010-01 20 1276739 1276739 C A SNPH Intron 0.28 TCGA-AA-A010-01 20 13260470 13260470 C A ISM1 Missense_Mutation p.L190I 0.37 tolerated(0.14) probably_damaging(0.996) TCGA-AA-A010-01 20 13695385 13695385 A C ESF1 3'UTR 0.36 TCGA-AA-A010-01 20 13847451 13847451 A C SEL1L2 Missense_Mutation p.F434C 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 20 13894461 13894461 G T SEL1L2 Silent p.S172S 0.32 TCGA-AA-A010-01 20 139570 139570 C T DEFB127 Missense_Mutation p.P69S 0.35 tolerated(0.21) benign(0.017) TCGA-AA-A010-01 20 13982984 13982984 G T MACROD2 Missense_Mutation p.D33Y 0.37 deleterious(0) probably_damaging(0.981) TCGA-AA-A010-01 20 14306584 14306584 T G FLRT3 Missense_Mutation p.K523N 0.36 tolerated(0.5) benign(0.299) TCGA-AA-A010-01 20 14307246 14307246 G A FLRT3 Missense_Mutation p.R303C 0.39 deleterious(0) possibly_damaging(0.846) TCGA-AA-A010-01 20 1532601 1532601 C T RP4-576H24.4 Missense_Mutation p.V172I 0.41 deleterious(0.03) benign(0.005) TCGA-AA-A010-01 20 15913977 15913977 G T MACROD2 Missense_Mutation p.D278Y 0.57 deleterious(0) possibly_damaging(0.542) TCGA-AA-A010-01 20 1617063 1617063 G T SIRPG Missense_Mutation p.F173L 0.33 deleterious(0.02) probably_damaging(0.918) TCGA-AA-A010-01 20 1617962 1617962 G A SIRPG Intron 0.19 TCGA-AA-A010-01 20 16731828 16731828 A - OTOR 3'UTR 0.25 TCGA-AA-A010-01 20 17581461 17581461 G T DSTN Nonsense_Mutation p.E28* 0.37 TCGA-AA-A010-01 20 17581541 17581541 G T DSTN Missense_Mutation p.E54D 0.44 deleterious(0.01) benign(0.122) TCGA-AA-A010-01 20 17602558 17602558 G A RRBP1 Missense_Mutation p.A628V 0.27 tolerated(0.17) benign(0) TCGA-AA-A010-01 20 17608210 17608210 C A RRBP1 Missense_Mutation p.R523I 0.37 deleterious(0) possibly_damaging(0.506) TCGA-AA-A010-01 20 17970819 17970819 C A MGME1 3'UTR 0.31 TCGA-AA-A010-01 20 18414295 18414295 C T DZANK1 Splice_Site p.X287_splice 0.47 TCGA-AA-A010-01 20 18470507 18470507 T C RBBP9 Silent p.E154E 0.40 TCGA-AA-A010-01 20 1961213 1961213 C T PDYN Missense_Mutation p.R174H 0.48 tolerated(0.06) probably_damaging(0.999) TCGA-AA-A010-01 20 20079416 20079416 G A C20orf26 Missense_Mutation p.V273I 0.39 tolerated(1) benign(0.004) TCGA-AA-A010-01 20 20373781 20373781 G T RALGAPA2 3'UTR 0.46 TCGA-AA-A010-01 20 20392720 20392720 G A RALGAPA2 Silent p.F1856F 0.29 TCGA-AA-A010-01 20 21337284 21337284 G T XRN2 Nonsense_Mutation p.E727* 0.38 TCGA-AA-A010-01 20 21687492 21687492 G A PAX1 Missense_Mutation p.E235K 0.34 deleterious(0.01) benign(0.432) TCGA-AA-A010-01 20 2290958 2290958 G A TGM3 Missense_Mutation p.A106T 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 20 23030043 23030043 G A THBD Silent p.H33H 0.35 TCGA-AA-A010-01 20 2321213 2321213 G A TGM3 Missense_Mutation p.D690N 0.40 tolerated(0.47) benign(0.016) TCGA-AA-A010-01 20 23346071 23346071 G A GZF1 Missense_Mutation p.D351N 0.36 tolerated(0.13) possibly_damaging(0.865) TCGA-AA-A010-01 20 23351111 23351111 C T GZF1 3'UTR 0.33 TCGA-AA-A010-01 20 23424620 23424620 A C CSTL1 Missense_Mutation p.K90T 0.29 tolerated(0.63) benign(0.154) TCGA-AA-A010-01 20 23432486 23432486 C T CST11 Silent p.T100T 0.37 TCGA-AA-A010-01 20 23614559 23614559 G A CST3 Silent p.D145D 0.37 TCGA-AA-A010-01 20 23728341 23728341 C T CST1 3'UTR 0.35 TCGA-AA-A010-01 20 23965823 23965823 T A GGTLC1 3'UTR 0.35 TCGA-AA-A010-01 20 25258957 25258957 C A PYGB Missense_Mutation p.F286L 0.44 tolerated(0.3) benign(0.027) TCGA-AA-A010-01 20 25276279 25276279 C T PYGB Silent p.C784C 0.35 TCGA-AA-A010-01 20 25304034 25304034 G T ABHD12 Missense_Mutation p.P117T 0.38 deleterious(0) probably_damaging(0.985) TCGA-AA-A010-01 20 25388478 25388478 G A GINS1 Missense_Mutation p.E8K 0.38 tolerated(0.21) possibly_damaging(0.656) TCGA-AA-A010-01 20 2539319 2539319 G T TMC2 Missense_Mutation p.K100N 0.35 deleterious_low_confidence(0.02) benign(0.029) TCGA-AA-A010-01 20 25457555 25457555 G A NINL Missense_Mutation p.A791V 0.36 tolerated(0.36) benign(0.004) TCGA-AA-A010-01 20 25481572 25481572 G T NINL Missense_Mutation p.F312L 0.29 tolerated(0.15) benign(0.05) TCGA-AA-A010-01 20 2730318 2730318 C T EBF4 Silent p.G266G 0.30 TCGA-AA-A010-01 20 2736314 2736314 T C EBF4 Missense_Mutation p.S524P 0.24 tolerated_low_confidence(0.21) benign(0.391) TCGA-AA-A010-01 20 2776058 2776058 C A CPXM1 Missense_Mutation p.M575I 0.34 tolerated(0.12) possibly_damaging(0.47) TCGA-AA-A010-01 20 2777708 2777708 A G CPXM1 Missense_Mutation p.S289P 0.36 tolerated(0.58) benign(0) TCGA-AA-A010-01 20 279844 279844 C T ZCCHC3 3'UTR 0.35 TCGA-AA-A010-01 20 280432 280432 G T ZCCHC3 3'UTR 0.36 TCGA-AA-A010-01 20 29614273 29614273 G T FRG1B 5'UTR 0.47 TCGA-AA-A010-01 20 29623237 29623237 G A FRG1B Missense_Mutation p.E17K 0.04 tolerated(0.35) benign(0.002) TCGA-AA-A010-01 20 29976964 29976964 C T DEFB119 Missense_Mutation p.R44Q 0.45 tolerated(0.66) benign(0.001) TCGA-AA-A010-01 20 30366672 30366672 G T TPX2 Missense_Mutation p.K313N 0.30 tolerated(1) probably_damaging(0.919) TCGA-AA-A010-01 20 30366755 30366755 G T TPX2 Missense_Mutation p.R341I 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 20 30536662 30536662 T C PDRG1 Missense_Mutation p.N63D 0.37 tolerated(0.15) benign(0.011) TCGA-AA-A010-01 20 30584774 30584774 C A XKR7 Silent p.V418V 0.34 TCGA-AA-A010-01 20 30610516 30610516 C T CCM2L Silent p.Y329Y 0.36 TCGA-AA-A010-01 20 30898846 30898846 G T KIF3B Missense_Mutation p.E422D 0.32 tolerated(0.08) benign(0.044) TCGA-AA-A010-01 20 30954253 30954253 G T ASXL1 Nonsense_Mutation p.G42* 0.31 TCGA-AA-A010-01 20 3127480 3127480 C T FASTKD5 Missense_Mutation p.R746Q 0.34 tolerated(0.06) benign(0.297) TCGA-AA-A010-01 20 31388676 31388676 C T DNMT3B Silent p.G647G 0.44 TCGA-AA-A010-01 20 3145122 3145122 C T LZTS3 Missense_Mutation p.R667H 0.31 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 20 31463746 31463746 G A EFCAB8 Missense_Mutation p.A75T 0.39 TCGA-AA-A010-01 20 31571591 31571591 G T SUN5 3'UTR 0.30 TCGA-AA-A010-01 20 31592074 31592074 G T SUN5 Silent p.R25R 0.37 TCGA-AA-A010-01 20 31601640 31601640 G A BPIFB2 Silent p.T111T 0.33 TCGA-AA-A010-01 20 31623423 31623423 T C BPIFB6 Silent p.C174C 0.36 TCGA-AA-A010-01 20 31813033 31813033 C A BPIFA3 Silent p.V172V 0.33 TCGA-AA-A010-01 20 31890735 31890735 T A BPIFB1 Missense_Mutation p.L332Q 0.41 deleterious(0) probably_damaging(0.985) TCGA-AA-A010-01 20 31967458 31967458 T G CDK5RAP1 Missense_Mutation p.S306R 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 20 3209220 3209220 C T SLC4A11 Missense_Mutation p.A819T 0.45 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 20 3215509 3215509 G A SLC4A11 Silent p.F83F 0.39 TCGA-AA-A010-01 20 32217586 32217586 G A CBFA2T2 Missense_Mutation p.R374H 0.49 tolerated(0.11) possibly_damaging(0.786) TCGA-AA-A010-01 20 32250409 32250409 C T NECAB3 Intron 0.45 TCGA-AA-A010-01 20 3233169 3233169 T C C20orf194 3'UTR 0.39 TCGA-AA-A010-01 20 3233310 3233310 C A C20orf194 Missense_Mutation p.D1148Y 0.33 deleterious(0) possibly_damaging(0.902) TCGA-AA-A010-01 20 3234400 3234400 G T C20orf194 Missense_Mutation p.F1131L 0.31 tolerated(0.39) probably_damaging(0.997) TCGA-AA-A010-01 20 32693249 32693249 C A EIF2S2 Nonsense_Mutation p.E40* 0.40 TCGA-AA-A010-01 20 32873319 32873319 T C AHCY Missense_Mutation p.Q365R 0.47 deleterious_low_confidence(0.01) probably_damaging(0.911) TCGA-AA-A010-01 20 3295726 3295726 T A C20orf194 Missense_Mutation p.E544D 0.30 tolerated(0.94) benign(0.008) TCGA-AA-A010-01 20 33298242 33298242 G A TP53INP2 3'UTR 0.38 TCGA-AA-A010-01 20 33298298 33298298 C A TP53INP2 3'UTR 0.50 TCGA-AA-A010-01 20 33328793 33328793 G T NCOA6 Missense_Mutation p.S1756Y 0.37 benign(0.398) TCGA-AA-A010-01 20 33330434 33330434 G A NCOA6 Missense_Mutation p.P1209L 0.36 probably_damaging(0.999) TCGA-AA-A010-01 20 33450711 33450711 C T GGT7 Missense_Mutation p.E155K 0.42 tolerated(0.17) benign(0.007) TCGA-AA-A010-01 20 33516728 33516728 T G GSS Missense_Mutation p.K443T 0.38 tolerated(0.06) benign(0.011) TCGA-AA-A010-01 20 3354717 3354717 C T C20orf194 Missense_Mutation p.G197E 0.44 deleterious(0) probably_damaging(0.976) TCGA-AA-A010-01 20 33565852 33565852 G A MYH7B Missense_Mutation p.R57H 0.46 probably_damaging(0.999) TCGA-AA-A010-01 20 33585072 33585072 G A MYH7B Missense_Mutation p.E1168K 0.42 probably_damaging(0.997) TCGA-AA-A010-01 20 33589096 33589096 G A MYH7B Missense_Mutation p.E1884K 0.39 possibly_damaging(0.729) TCGA-AA-A010-01 20 33764804 33764804 A G PROCR 3'UTR 0.64 TCGA-AA-A010-01 20 33875396 33875396 G A FAM83C Missense_Mutation p.R396C 0.34 tolerated_low_confidence(0.1) benign(0.064) TCGA-AA-A010-01 20 33934896 33934896 A G UQCC1 Intron 0.33 TCGA-AA-A010-01 20 33971871 33971871 C T UQCC1 Silent p.Q65Q 0.33 TCGA-AA-A010-01 20 34053899 34053899 G A CEP250 Missense_Mutation p.R121Q 0.38 benign(0.055) TCGA-AA-A010-01 20 34084470 34084470 C T CEP250 Nonsense_Mutation p.R1078* 0.31 TCGA-AA-A010-01 20 34090318 34090318 C A CEP250 Missense_Mutation p.A1374D 0.38 possibly_damaging(0.791) TCGA-AA-A010-01 20 34091528 34091528 G T CEP250 Missense_Mutation p.E1777D 0.50 possibly_damaging(0.594) TCGA-AA-A010-01 20 34215203 34215203 G A CPNE1 Missense_Mutation p.S417L 0.32 deleterious(0.03) benign(0.077) TCGA-AA-A010-01 20 34215288 34215288 G A CPNE1 Missense_Mutation p.R389C 0.32 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 20 34320040 34320040 C T RBM39 Missense_Mutation p.S40N 0.38 tolerated(0.13) benign(0.213) TCGA-AA-A010-01 20 34611607 34611607 G A CNBD2 Silent p.R447R 0.32 TCGA-AA-A010-01 20 35776303 35776303 G A MROH8 Nonsense_Mutation p.R389* 0.33 TCGA-AA-A010-01 20 35869945 35869945 T G RPN2 3'UTR 0.38 TCGA-AA-A010-01 20 3619484 3619484 C T ATRN Nonsense_Mutation p.R1318* 0.44 TCGA-AA-A010-01 20 3675434 3675434 C T SIGLEC1 Silent p.S940S 0.36 TCGA-AA-A010-01 20 3677958 3677958 T C SIGLEC1 Silent p.T718T 0.31 TCGA-AA-A010-01 20 36784380 36784380 G A TGM2 Missense_Mutation p.S101L 0.39 tolerated(0.17) benign(0.021) TCGA-AA-A010-01 20 3678606 3678606 C A SIGLEC1 Missense_Mutation p.S654I 0.50 tolerated(0.17) possibly_damaging(0.843) TCGA-AA-A010-01 20 37163800 37163800 G T RALGAPB Missense_Mutation p.D777Y 0.42 deleterious(0) probably_damaging(0.956) TCGA-AA-A010-01 20 37203462 37203462 G T RALGAPB Missense_Mutation p.R1446I 0.44 deleterious(0) probably_damaging(0.931) TCGA-AA-A010-01 20 37353442 37353442 C T SLC32A1 Silent p.S25S 0.37 TCGA-AA-A010-01 20 37531333 37531333 C T PPP1R16B Silent p.N198N 0.37 TCGA-AA-A010-01 20 37534659 37534659 C T PPP1R16B Silent p.L248L 0.24 TCGA-AA-A010-01 20 37580199 37580199 G A FAM83D Missense_Mutation p.G295D 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 20 37580810 37580810 G A FAM83D Missense_Mutation p.V499I 0.38 tolerated(0.19) benign(0.005) TCGA-AA-A010-01 20 37623522 37623522 A G DHX35 Missense_Mutation p.D214G 0.42 deleterious(0.02) benign(0.009) TCGA-AA-A010-01 20 391274 391274 T G RBCK1 Intron 0.39 TCGA-AA-A010-01 20 39317118 39317118 C T MAFB Missense_Mutation p.D125N 0.28 deleterious(0.04) benign(0.081) TCGA-AA-A010-01 20 39704866 39704866 G T TOP1 Missense_Mutation p.D71Y 0.34 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 20 39974623 39974623 G A LPIN3 Silent p.S60S 0.39 TCGA-AA-A010-01 20 39981290 39981290 A T LPIN3 Missense_Mutation p.N470Y 0.38 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 20 40049807 40049807 A C CHD6 Missense_Mutation p.F1823C 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.664) TCGA-AA-A010-01 20 40730782 40730782 G T PTPRT Silent p.I1232I 0.35 TCGA-AA-A010-01 20 411022 411022 G A RBCK1 Missense_Mutation p.R494H 0.29 deleterious(0) possibly_damaging(0.833) TCGA-AA-A010-01 20 4168150 4168150 G T SMOX 3'UTR 0.41 TCGA-AA-A010-01 20 419812 419812 A C TBC1D20 Missense_Mutation p.F299C 0.38 deleterious(0) possibly_damaging(0.85) TCGA-AA-A010-01 20 42088857 42088857 G A SRSF6 Missense_Mutation p.R189Q 0.46 deleterious(0.05) unknown(0) TCGA-AA-A010-01 20 42213730 42213730 G A SGK2 3'UTR 0.41 TCGA-AA-A010-01 20 42331372 42331372 C T MYBL2 Silent p.V398V 0.39 TCGA-AA-A010-01 20 42355463 42355463 C T GTSF1L 5'UTR 0.35 TCGA-AA-A010-01 20 42907807 42907807 C T GDAP1L1 Missense_Mutation p.S324L 0.45 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 20 43048467 43048467 C T HNF4A Silent p.I281I 0.41 TCGA-AA-A010-01 20 43530295 43530295 G A YWHAB Missense_Mutation p.E41K 0.37 deleterious_low_confidence(0) benign(0.295) TCGA-AA-A010-01 20 43571783 43571783 C A TOMM34 Missense_Mutation p.K299N 0.38 tolerated(0.07) benign(0.081) TCGA-AA-A010-01 20 43850551 43850551 C T SEMG2 Missense_Mutation p.A93V 0.34 tolerated(0.23) benign(0.007) TCGA-AA-A010-01 20 43940232 43940232 C A RBPJL Missense_Mutation p.F87L 0.33 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 20 43945131 43945131 C T RBPJL Silent p.G397G 0.39 TCGA-AA-A010-01 20 44037061 44037061 G A DBNDD2 Missense_Mutation p.R87Q 0.41 tolerated_low_confidence(0.87) benign(0.001) TCGA-AA-A010-01 20 44166705 44166705 G A WFDC6 Silent p.C40C 0.38 TCGA-AA-A010-01 20 44236778 44236778 C A WFDC9 Nonsense_Mutation p.E81* 0.43 TCGA-AA-A010-01 20 44258495 44258495 C T WFDC10A Silent p.L15L 0.34 TCGA-AA-A010-01 20 44505457 44505457 G T ZSWIM3 Missense_Mutation p.R87I 0.39 deleterious(0.05) benign(0.021) TCGA-AA-A010-01 20 44511729 44511729 C A ZSWIM1 Silent p.V166V 0.42 TCGA-AA-A010-01 20 44515190 44515190 G T SPATA25 Missense_Mutation p.S217Y 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.804) TCGA-AA-A010-01 20 44520357 44520357 C A CTSA Nonsense_Mutation p.Y68* 0.36 TCGA-AA-A010-01 20 44538179 44538179 T C PLTP Missense_Mutation p.H154R 0.37 tolerated(0.6) benign(0.023) TCGA-AA-A010-01 20 44665418 44665418 G A SLC12A5 Silent p.T178T 0.41 TCGA-AA-A010-01 20 44680462 44680462 G A SLC12A5 Missense_Mutation p.R800H 0.39 tolerated(0.21) benign(0.006) TCGA-AA-A010-01 20 45002060 45002060 G A ELMO2 Missense_Mutation p.A465V 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 20 45130872 45130872 C A ZNF334 Missense_Mutation p.R369I 0.26 deleterious(0) possibly_damaging(0.674) TCGA-AA-A010-01 20 45170327 45170327 G A OCSTAMP Silent p.I429I 0.39 TCGA-AA-A010-01 20 45874915 45874915 C A ZMYND8 Missense_Mutation p.K707N 0.38 deleterious_low_confidence(0.01) benign(0.425) TCGA-AA-A010-01 20 468211 468211 C T CSNK2A1 Missense_Mutation p.R278Q 0.34 deleterious(0) possibly_damaging(0.901) TCGA-AA-A010-01 20 4708682 4708682 C T PRND 3'UTR 0.45 TCGA-AA-A010-01 20 47267558 47267558 G A PREX1 Silent p.F897F 0.35 TCGA-AA-A010-01 20 47274723 47274723 T G PREX1 Missense_Mutation p.K642T 0.33 deleterious(0.01) benign(0.181) TCGA-AA-A010-01 20 47317360 47317360 G A PREX1 Missense_Mutation p.A283V 0.28 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 20 47689137 47689137 A C CSE1L Silent p.S323S 0.38 TCGA-AA-A010-01 20 47864845 47864845 T C ZNFX1 Silent p.Q1572Q 0.41 TCGA-AA-A010-01 20 47879982 47879982 A C ZNFX1 Missense_Mutation p.H730Q 0.46 tolerated(0.59) benign(0.007) TCGA-AA-A010-01 20 47881340 47881340 G T ZNFX1 Silent p.I688I 0.23 TCGA-AA-A010-01 20 47990385 47990385 G A KCNB1 Missense_Mutation p.P571L 0.39 deleterious_low_confidence(0.04) possibly_damaging(0.521) TCGA-AA-A010-01 20 48129637 48129637 C A PTGIS Nonsense_Mutation p.E396* 0.37 TCGA-AA-A010-01 20 48503378 48503378 C T SLC9A8 Silent p.F543F 0.41 TCGA-AA-A010-01 20 48504386 48504386 C A SLC9A8 Silent p.I569I 0.34 TCGA-AA-A010-01 20 48523324 48523324 C T SPATA2 Missense_Mutation p.R132Q 0.38 tolerated(0.15) benign(0.01) TCGA-AA-A010-01 20 48713259 48713259 C T UBE2V1 Missense_Mutation p.E64K 0.36 deleterious(0.03) benign(0.055) TCGA-AA-A010-01 20 48746170 48746170 C T TMEM189-UBE2V1 Missense_Mutation p.D131N 0.38 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-AA-A010-01 20 49508155 49508155 G T ADNP Silent p.S1032S 0.28 TCGA-AA-A010-01 20 49621300 49621300 G A KCNG1 Missense_Mutation p.S273L 0.34 deleterious(0.02) possibly_damaging(0.453) TCGA-AA-A010-01 20 49626332 49626332 G A KCNG1 Missense_Mutation p.R182W 0.40 deleterious(0.01) possibly_damaging(0.517) TCGA-AA-A010-01 20 50310601 50310601 C T ATP9A Silent p.T196T 0.39 TCGA-AA-A010-01 20 50407689 50407689 A G SALL4 Missense_Mutation p.F445L 0.40 tolerated(0.14) benign(0.009) TCGA-AA-A010-01 20 50782553 50782553 C A ZFP64 Nonsense_Mutation p.E100* 0.40 TCGA-AA-A010-01 20 5099478 5099478 C A PCNA Missense_Mutation p.D86Y 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 20 5166428 5166428 G T CDS2 Missense_Mutation p.G262C 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 20 51871782 51871782 C A TSHZ2 Silent p.A595A 0.33 TCGA-AA-A010-01 20 52188339 52188339 T G ZNF217 Missense_Mutation p.N1031H 0.43 deleterious(0.02) possibly_damaging(0.778) TCGA-AA-A010-01 20 52774009 52774009 G A CYP24A1 Missense_Mutation p.A451V 0.32 deleterious(0) probably_damaging(0.952) TCGA-AA-A010-01 20 52774054 52774054 C A CYP24A1 Missense_Mutation p.R436I 0.36 deleterious(0.01) possibly_damaging(0.716) TCGA-AA-A010-01 20 54573523 54573523 G T CBLN4 3'UTR 0.41 TCGA-AA-A010-01 20 54824224 54824224 G A MC3R Missense_Mutation p.E109K 0.34 tolerated(0.32) benign(0.403) TCGA-AA-A010-01 20 54972702 54972702 C A CSTF1 Silent p.V150V 0.39 TCGA-AA-A010-01 20 5566888 5566888 C A GPCPD1 Missense_Mutation p.V87F 0.42 deleterious(0) probably_damaging(0.964) TCGA-AA-A010-01 20 56090777 56090777 C T CTCFL Silent p.T391T 0.48 TCGA-AA-A010-01 20 56190021 56190021 G A ZBP1 Nonsense_Mutation p.R142* 0.33 TCGA-AA-A010-01 20 56928356 56928356 C T RAB22A Nonsense_Mutation p.R76* 0.35 TCGA-AA-A010-01 20 56928586 56928586 C T RAB22A Silent p.I123I 0.34 TCGA-AA-A010-01 20 57036304 57036304 C T APCDD1L Missense_Mutation p.E350K 0.39 deleterious(0) possibly_damaging(0.784) TCGA-AA-A010-01 20 57042490 57042490 C A APCDD1L Missense_Mutation p.S138I 0.38 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 20 57088971 57088971 C A APCDD1L Intron 0.34 TCGA-AA-A010-01 20 57430271 57430271 G T GNAS Nonsense_Mutation p.E651* 0.40 TCGA-AA-A010-01 20 57768921 57768921 G T ZNF831 Missense_Mutation p.E949D 0.42 tolerated(0.23) benign(0.018) TCGA-AA-A010-01 20 57829023 57829023 C A ZNF831 Missense_Mutation p.S1420Y 0.28 deleterious(0.02) possibly_damaging(0.498) TCGA-AA-A010-01 20 58342294 58342294 C T PHACTR3 Missense_Mutation p.P199S 0.40 tolerated(0.23) benign(0.006) TCGA-AA-A010-01 20 58349360 58349360 C T PHACTR3 Missense_Mutation p.T330M 0.38 deleterious(0.04) probably_damaging(0.912) TCGA-AA-A010-01 20 58452511 58452511 C A SYCP2 Missense_Mutation p.D1027Y 0.39 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 20 58514177 58514177 G A PPP1R3D Silent p.N270N 0.34 TCGA-AA-A010-01 20 58519544 58519544 C T FAM217B Silent p.I182I 0.33 TCGA-AA-A010-01 20 58571434 58571434 G T CDH26 Intron 0.43 TCGA-AA-A010-01 20 58645833 58645833 G A C20orf197 Missense_Mutation p.G84E 0.36 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AA-A010-01 20 5897562 5897562 A T CHGB Missense_Mutation p.T63S 0.37 deleterious(0.01) benign(0.021) TCGA-AA-A010-01 20 5987989 5987989 C A CRLS1 Intron 0.34 TCGA-AA-A010-01 20 60293722 60293722 C T RP11-429E11.3 3'UTR 0.41 TCGA-AA-A010-01 20 60294262 60294262 C A RP11-429E11.3 5'UTR 0.37 TCGA-AA-A010-01 20 60498534 60498534 C A CDH4 Missense_Mutation p.A467D 0.35 tolerated(0.11) possibly_damaging(0.449) TCGA-AA-A010-01 20 60902723 60902723 C A LAMA5 Missense_Mutation p.E1600D 0.36 probably_damaging(0.994) TCGA-AA-A010-01 20 61287768 61287768 G A SLCO4A1 5'UTR 0.36 TCGA-AA-A010-01 20 61444198 61444198 G A OGFR Missense_Mutation p.A411T 0.39 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 20 61510545 61510545 G A DIDO1 3'UTR 0.40 TCGA-AA-A010-01 20 61512998 61512998 G A DIDO1 Missense_Mutation p.A1437V 0.39 probably_damaging(0.998) TCGA-AA-A010-01 20 61522323 61522323 A C DIDO1 Missense_Mutation p.F1177C 0.50 probably_damaging(0.999) TCGA-AA-A010-01 20 61522460 61522460 G A DIDO1 Silent p.V1131V 0.34 TCGA-AA-A010-01 20 61537415 61537415 G T DIDO1 Missense_Mutation p.A471D 0.34 possibly_damaging(0.649) TCGA-AA-A010-01 20 61637632 61637632 G A BHLHE23 Silent p.N149N 0.28 TCGA-AA-A010-01 20 61878933 61878933 G A NKAIN4 Silent p.I156I 0.40 TCGA-AA-A010-01 20 61929311 61929311 G A COL20A1 Missense_Mutation p.M44I 0.32 tolerated(0.08) benign(0.196) TCGA-AA-A010-01 20 61937383 61937383 G A COL20A1 Missense_Mutation p.R163H 0.32 tolerated(0.13) benign(0.004) TCGA-AA-A010-01 20 62103702 62103702 C T KCNQ2 Missense_Mutation p.A39T 0.69 tolerated(0.25) probably_damaging(0.999) TCGA-AA-A010-01 20 62127233 62127233 C A EEF1A2 Missense_Mutation p.K100N 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A010-01 20 62187068 62187068 C T C20orf195 Missense_Mutation p.P18S 0.39 tolerated(0.21) benign(0.015) TCGA-AA-A010-01 20 62201541 62201541 G A HELZ2 Intron 0.30 TCGA-AA-A010-01 20 62324281 62324281 G A RTEL1 Missense_Mutation p.D950N 0.37 tolerated(0.15) benign(0.362) TCGA-AA-A010-01 20 62330026 62330026 T G ARFRP1 3'Flank 0.43 TCGA-AA-A010-01 20 62340109 62340109 G T ZGPAT Missense_Mutation p.K59N 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 20 62421805 62421805 G T ZBTB46 Silent p.V102V 0.31 TCGA-AA-A010-01 20 62594052 62594052 C T ZNF512B Missense_Mutation p.R684H 0.35 deleterious(0) possibly_damaging(0.893) TCGA-AA-A010-01 20 62595166 62595166 C A ZNF512B Missense_Mutation p.K527N 0.38 deleterious(0) benign(0.185) TCGA-AA-A010-01 20 62729997 62729997 G A OPRL1 Missense_Mutation p.A320T 0.42 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 20 62830246 62830246 G A MYT1 Missense_Mutation p.R11H 0.37 benign(0.182) TCGA-AA-A010-01 20 62863581 62863581 G A MYT1 Missense_Mutation p.A914T 0.39 probably_damaging(1) TCGA-AA-A010-01 20 7915205 7915205 C A HAO1 Missense_Mutation p.S72I 0.46 deleterious(0) probably_damaging(0.912) TCGA-AA-A010-01 20 7963216 7963216 C T TMX4 Silent p.A244A 0.44 TCGA-AA-A010-01 20 8709737 8709737 A G PLCB1 Missense_Mutation p.T602A 0.50 deleterious(0) benign(0.362) TCGA-AA-A010-01 20 941070 941070 C T RSPO4 Missense_Mutation p.R212H 0.46 deleterious(0) probably_damaging(0.923) TCGA-AA-A010-01 20 9416235 9416235 G T PLCB4 Missense_Mutation p.K839N 0.33 tolerated(0.12) possibly_damaging(0.681) TCGA-AA-A010-01 20 9498737 9498737 G A LAMP5 Missense_Mutation p.A176T 0.34 tolerated(0.08) benign(0.442) TCGA-AA-A010-01 20 9560824 9560824 G A PAK7 Missense_Mutation p.R320C 0.40 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 21 10862630 10862630 G A IGHV1OR21-1 Nonsense_Mutation p.W3* 0.16 TCGA-AA-A010-01 21 10908892 10908892 G T TPTE Missense_Mutation p.L485I 0.15 tolerated(0.15) possibly_damaging(0.531) TCGA-AA-A010-01 21 10916377 10916377 C T TPTE Silent p.S423S 0.13 TCGA-AA-A010-01 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.07 deleterious(0.03) possibly_damaging(0.883) TCGA-AA-A010-01 21 10920109 10920109 A C TPTE Missense_Mutation p.F382C 0.13 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 21 10934954 10934954 C T TPTE Missense_Mutation p.R280Q 0.12 tolerated(0.84) benign(0.069) TCGA-AA-A010-01 21 10942976 10942976 C A TPTE Missense_Mutation p.R204I 0.14 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 21 10943004 10943004 G A TPTE Nonsense_Mutation p.R195* 0.15 TCGA-AA-A010-01 21 11029655 11029655 A G BAGE2 RNA 0.08 TCGA-AA-A010-01 21 11038985 11038985 G T BAGE2 RNA 0.06 TCGA-AA-A010-01 21 11039266 11039266 C A BAGE2 RNA 0.05 TCGA-AA-A010-01 21 11039314 11039314 C T BAGE2 RNA 0.06 TCGA-AA-A010-01 21 11039351 11039351 A C BAGE2 RNA 0.05 TCGA-AA-A010-01 21 11049560 11049560 A C BAGE2 RNA 0.08 TCGA-AA-A010-01 21 14410732 14410732 G T ANKRD30BP2 5'Flank 0.18 TCGA-AA-A010-01 21 14982959 14982959 G A POTED Missense_Mutation p.R137Q 0.72 tolerated(0.45) benign(0.01) TCGA-AA-A010-01 21 15596824 15596824 C A RBM11 Missense_Mutation p.S133Y 0.36 tolerated(0.08) benign(0.342) TCGA-AA-A010-01 21 16339045 16339045 G T NRIP1 Missense_Mutation p.S490Y 0.46 deleterious(0.01) possibly_damaging(0.851) TCGA-AA-A010-01 21 16340192 16340192 A C NRIP1 Missense_Mutation p.L108V 0.43 tolerated(0.24) benign(0.139) TCGA-AA-A010-01 21 17135221 17135221 G A USP25 Silent p.T19T 0.30 TCGA-AA-A010-01 21 18924066 18924066 G T CXADR Splice_Site p.X71_splice 0.26 TCGA-AA-A010-01 21 19744581 19744581 A G TMPRSS15 Missense_Mutation p.I198T 0.33 deleterious(0) possibly_damaging(0.721) TCGA-AA-A010-01 21 19755982 19755982 A G TMPRSS15 Missense_Mutation p.V153A 0.40 tolerated(0.21) benign(0.02) TCGA-AA-A010-01 21 19770252 19770252 G T TMPRSS15 Silent p.I96I 0.33 TCGA-AA-A010-01 21 22746196 22746196 G T NCAM2 Missense_Mutation p.R353L 0.38 deleterious(0.01) probably_damaging(0.942) TCGA-AA-A010-01 21 22839038 22839038 T C NCAM2 Missense_Mutation p.L589S 0.38 tolerated(0.18) probably_damaging(0.985) TCGA-AA-A010-01 21 22881175 22881175 C T NCAM2 Missense_Mutation p.T694M 0.30 deleterious(0.03) possibly_damaging(0.724) TCGA-AA-A010-01 21 27117628 27117628 C A GABPA Missense_Mutation p.S62Y 0.36 deleterious(0.02) possibly_damaging(0.601) TCGA-AA-A010-01 21 27137088 27137088 C T GABPA Missense_Mutation p.R376C 0.27 deleterious(0) possibly_damaging(0.728) TCGA-AA-A010-01 21 27327992 27327992 G A APP Silent p.F512F 0.34 TCGA-AA-A010-01 21 28216825 28216825 T C ADAMTS1 Missense_Mutation p.Y150C 0.44 tolerated(0.18) probably_damaging(0.974) TCGA-AA-A010-01 21 28338243 28338243 G A ADAMTS5 Silent p.F156F 0.46 TCGA-AA-A010-01 21 30380805 30380805 C A RWDD2B Missense_Mutation p.D69Y 0.37 deleterious(0.01) possibly_damaging(0.819) TCGA-AA-A010-01 21 30437424 30437424 G A CCT8 Silent p.G209G 0.37 TCGA-AA-A010-01 21 30547271 30547271 G T MAP3K7CL 3'UTR 0.36 TCGA-AA-A010-01 21 30698685 30698685 G T BACH1 Missense_Mutation p.Q180H 0.38 deleterious(0.04) benign(0.002) TCGA-AA-A010-01 21 30959871 30959871 G A GRIK1 Silent p.Y536Y 0.42 TCGA-AA-A010-01 21 31023465 31023465 C T GRIK1 Silent p.E309E 0.59 TCGA-AA-A010-01 21 31066353 31066353 G A GRIK1 Missense_Mutation p.P50S 0.36 tolerated(0.7) benign(0.01) TCGA-AA-A010-01 21 31311868 31311868 G A GRIK1 5'UTR 0.38 TCGA-AA-A010-01 21 31538598 31538598 C A CLDN17 Missense_Mutation p.R113M 0.32 deleterious(0) possibly_damaging(0.841) TCGA-AA-A010-01 21 31587485 31587485 C A CLDN8 3'UTR 0.40 TCGA-AA-A010-01 21 31587593 31587593 G A CLDN8 Silent p.S217S 0.35 TCGA-AA-A010-01 21 31692048 31692048 G T KRTAP26-1 Missense_Mutation p.F102L 0.33 tolerated(0.38) benign(0.012) TCGA-AA-A010-01 21 31692496 31692496 T C KRTAP26-1 5'UTR 0.36 TCGA-AA-A010-01 21 31768991 31768991 C A KRTAP13-1 3'UTR 0.30 TCGA-AA-A010-01 21 31852379 31852379 G T KRTAP19-1 Missense_Mutation p.F86L 0.38 tolerated_low_confidence(0.14) unknown(0) TCGA-AA-A010-01 21 31874282 31874282 C A KRTAP19-5 Missense_Mutation p.G43C 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 21 32201873 32201873 G T KRTAP7-1 RNA 0.34 TCGA-AA-A010-01 21 32201934 32201934 G A KRTAP7-1 RNA 0.46 TCGA-AA-A010-01 21 32490814 32490814 C T TIAM1 3'UTR 0.38 TCGA-AA-A010-01 21 32526694 32526694 G T TIAM1 Silent p.P1014P 0.33 TCGA-AA-A010-01 21 32589979 32589979 G A TIAM1 Missense_Mutation p.R678C 0.38 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 21 32598046 32598046 T C TIAM1 Missense_Mutation p.D602G 0.35 deleterious(0.03) benign(0.233) TCGA-AA-A010-01 21 32638718 32638718 C A TIAM1 Nonsense_Mutation p.E191* 0.32 TCGA-AA-A010-01 21 32639243 32639243 C A TIAM1 Nonsense_Mutation p.E16* 0.47 TCGA-AA-A010-01 21 33065780 33065780 C T SCAF4 Missense_Mutation p.R447Q 0.42 benign(0.238) TCGA-AA-A010-01 21 33371162 33371162 C T HUNK Missense_Mutation p.P604S 0.24 tolerated_low_confidence(0.13) benign(0.034) TCGA-AA-A010-01 21 33687246 33687246 C T URB1 Missense_Mutation p.A2267T 0.47 tolerated(0.32) benign(0) TCGA-AA-A010-01 21 33697681 33697681 C T URB1 Missense_Mutation p.R1660Q 0.35 tolerated(0.21) benign(0.072) TCGA-AA-A010-01 21 33739047 33739047 C T URB1 Silent p.P405P 0.34 TCGA-AA-A010-01 21 34022646 34022646 C T SYNJ1 Missense_Mutation p.R1001Q 0.28 deleterious(0.04) possibly_damaging(0.657) TCGA-AA-A010-01 21 34110548 34110548 C T PAXBP1 Missense_Mutation p.R806Q 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 21 34116023 34116023 C A PAXBP1 Missense_Mutation p.D745Y 0.34 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 21 34120930 34120930 C A PAXBP1 Missense_Mutation p.Q601H 0.26 tolerated(0.46) benign(0.065) TCGA-AA-A010-01 21 34399181 34399181 A G OLIG2 Missense_Mutation p.D4G 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.824) TCGA-AA-A010-01 21 34444552 34444552 T G OLIG1 3'UTR 0.41 TCGA-AA-A010-01 21 34727767 34727767 C T IFNAR1 Missense_Mutation p.S529F 0.33 deleterious(0.03) benign(0.274) TCGA-AA-A010-01 21 34860656 34860656 C A DNAJC28 Nonsense_Mutation p.E349* 0.35 TCGA-AA-A010-01 21 34861111 34861111 G A DNAJC28 Missense_Mutation p.T197M 0.30 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 21 34861550 34861550 C A DNAJC28 Nonsense_Mutation p.E51* 0.29 TCGA-AA-A010-01 21 34901204 34901204 G T GART Missense_Mutation p.L255I 0.38 tolerated(0.1) probably_damaging(1) TCGA-AA-A010-01 21 34925164 34925164 G A SON Silent p.S1209S 0.38 TCGA-AA-A010-01 21 34951660 34951660 T A DONSON Missense_Mutation p.D520V 0.29 deleterious(0.04) benign(0.007) TCGA-AA-A010-01 21 34951694 34951694 A C DONSON Missense_Mutation p.F509V 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-AA-A010-01 21 34953638 34953638 A C DONSON Silent p.A440A 0.46 TCGA-AA-A010-01 21 34961840 34961840 C A CRYZL1 3'UTR 0.38 TCGA-AA-A010-01 21 35144571 35144571 C T ITSN1 Missense_Mutation p.R417W 0.40 deleterious(0) unknown(0) TCGA-AA-A010-01 21 35276252 35276252 T G ATP5O Missense_Mutation p.K172T 0.36 tolerated(0.12) possibly_damaging(0.72) TCGA-AA-A010-01 21 35471580 35471580 G A SLC5A3 3'UTR 0.35 TCGA-AA-A010-01 21 35476769 35476769 G T SLC5A3 3'UTR 0.41 TCGA-AA-A010-01 21 35477352 35477352 G T SLC5A3 3'UTR 0.37 TCGA-AA-A010-01 21 35821628 35821628 C T KCNE1 Missense_Mutation p.S102N 0.43 tolerated(0.42) benign(0.006) TCGA-AA-A010-01 21 35899025 35899025 T C RCAN1 Intron 0.36 TCGA-AA-A010-01 21 36088829 36088829 G A CLIC6 3'UTR 0.40 TCGA-AA-A010-01 21 37431255 37431255 C A SETD4 5'UTR 0.32 TCGA-AA-A010-01 21 37619897 37619897 C A DOPEY2 Missense_Mutation p.L1594I 0.44 deleterious(0) possibly_damaging(0.559) TCGA-AA-A010-01 21 38467731 38467731 G T TTC3 Missense_Mutation p.A257S 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 21 38516848 38516848 T C TTC3 Missense_Mutation p.F599S 0.46 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 21 38537940 38537940 A G TTC3 Missense_Mutation p.T1142A 0.40 tolerated(0.33) benign(0.338) TCGA-AA-A010-01 21 38555121 38555121 G A TTC3 Missense_Mutation p.E1555K 0.39 tolerated(0.28) possibly_damaging(0.834) TCGA-AA-A010-01 21 38573792 38573792 C T TTC3 Missense_Mutation p.R1999C 0.44 tolerated(0.06) benign(0.001) TCGA-AA-A010-01 21 38884217 38884217 C T DYRK1A Missense_Mutation p.R559C 0.41 tolerated_low_confidence(0.14) possibly_damaging(0.835) TCGA-AA-A010-01 21 39494623 39494623 C A DSCR8 Intron 0.23 TCGA-AA-A010-01 21 40717846 40717846 G T HMGN1 Intron 0.39 TCGA-AA-A010-01 21 40778146 40778146 G A LCA5L Missense_Mutation p.L559F 0.38 tolerated(0.7) benign(0.331) TCGA-AA-A010-01 21 40824020 40824020 G A SH3BGR Missense_Mutation p.E63K 0.36 tolerated(0.58) benign(0) TCGA-AA-A010-01 21 41032935 41032935 C T B3GALT5 Missense_Mutation p.A150V 0.25 deleterious(0.01) possibly_damaging(0.7) TCGA-AA-A010-01 21 41427665 41427665 C T DSCAM Silent p.T1674T 0.25 TCGA-AA-A010-01 21 41561123 41561123 G A DSCAM Missense_Mutation p.T800M 0.33 tolerated(0.1) possibly_damaging(0.871) TCGA-AA-A010-01 21 41710181 41710181 G A DSCAM Missense_Mutation p.L544F 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 21 42540396 42540396 C T BACE2 Missense_Mutation p.A69V 0.36 tolerated(0.17) benign(0.022) TCGA-AA-A010-01 21 42540475 42540475 G T BACE2 Missense_Mutation p.E95D 0.26 tolerated(0.09) benign(0.008) TCGA-AA-A010-01 21 42615327 42615327 T G BACE2 Missense_Mutation p.L258V 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 21 42749784 42749784 C A MX2 Silent p.S106S 0.36 TCGA-AA-A010-01 21 42807913 42807913 C T MX1 Silent p.S85S 0.31 TCGA-AA-A010-01 21 43222908 43222908 G A PRDM15 Silent p.G1335G 0.37 TCGA-AA-A010-01 21 43243752 43243752 C A PRDM15 Missense_Mutation p.K927N 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 21 43246402 43246402 G A PRDM15 Nonsense_Mutation p.R881* 0.35 TCGA-AA-A010-01 21 43277345 43277345 G A PRDM15 Silent p.F441F 0.40 TCGA-AA-A010-01 21 43413596 43413596 T G ZBTB21 Missense_Mutation p.L203F 0.39 tolerated(0.43) possibly_damaging(0.474) TCGA-AA-A010-01 21 43645981 43645981 C T ABCG1 Silent p.D81D 0.27 TCGA-AA-A010-01 21 43716283 43716283 C T ABCG1 Silent p.F606F 0.39 TCGA-AA-A010-01 21 43863490 43863490 C T UBASH3A Missense_Mutation p.A567V 0.40 tolerated(0.71) benign(0.01) TCGA-AA-A010-01 21 43867292 43867292 C A UBASH3A Silent p.I658I 0.42 TCGA-AA-A010-01 21 43892777 43892777 G A RSPH1 3'UTR 0.33 TCGA-AA-A010-01 21 43902752 43902752 C A RSPH1 Missense_Mutation p.D190Y 0.38 deleterious(0) possibly_damaging(0.837) TCGA-AA-A010-01 21 43913111 43913111 C T RSPH1 Missense_Mutation p.E45K 0.38 tolerated(0.07) probably_damaging(0.996) TCGA-AA-A010-01 21 44195453 44195453 C T PDE9A 3'UTR 0.48 TCGA-AA-A010-01 21 45094523 45094523 C T RRP1B Missense_Mutation p.R122C 0.45 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 21 45706442 45706442 G T AIRE Missense_Mutation p.E45D 0.41 tolerated(0.05) probably_damaging(0.999) TCGA-AA-A010-01 21 45709544 45709544 C T AIRE Silent p.G219G 0.32 TCGA-AA-A010-01 21 45810864 45810864 G T TRPM2 Missense_Mutation p.D466Y 0.41 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 21 45993667 45993667 G A KRTAP10-4 Missense_Mutation p.S11N 0.39 tolerated(0.06) possibly_damaging(0.535) TCGA-AA-A010-01 21 46020893 46020893 C T KRTAP10-7 Silent p.C124C 0.23 TCGA-AA-A010-01 21 46021709 46021709 C A KRTAP10-7 3'UTR 0.32 TCGA-AA-A010-01 21 46066867 46066867 T G KRTAP10-11 Missense_Mutation p.D164E 0.32 tolerated(0.69) unknown(0) TCGA-AA-A010-01 21 46086362 46086362 C T KRTAP12-2 3'UTR 0.39 TCGA-AA-A010-01 21 46330730 46330730 C A ITGB2 Intron 0.41 TCGA-AA-A010-01 21 46354962 46354962 G T C21orf67 Missense_Mutation p.P127H 0.49 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-AA-A010-01 21 46386953 46386953 C T FAM207A Silent p.I119I 0.41 TCGA-AA-A010-01 21 46698081 46698081 G A POFUT2 Silent p.S214S 0.43 TCGA-AA-A010-01 21 46900063 46900063 A G COL18A1 Missense_Mutation p.D644G 0.35 possibly_damaging(0.728) TCGA-AA-A010-01 21 46907417 46907417 G A COL18A1 Silent p.G810G 0.36 TCGA-AA-A010-01 21 47321009 47321009 C T PCBP3 Silent p.I107I 0.48 TCGA-AA-A010-01 21 47422446 47422446 C A COL6A1 Silent p.V752V 0.36 TCGA-AA-A010-01 21 47423425 47423425 C T COL6A1 Missense_Mutation p.A862V 0.50 deleterious(0) probably_damaging(0.949) TCGA-AA-A010-01 21 47556409 47556409 C A FTCD Splice_Site 0.45 TCGA-AA-A010-01 21 47630628 47630628 C T LSS Missense_Mutation p.A390T 0.36 deleterious(0.05) benign(0.139) TCGA-AA-A010-01 21 47737204 47737204 A G C21orf58 Intron 0.38 TCGA-AA-A010-01 21 47767388 47767388 T C PCNT Silent p.L332L 0.33 TCGA-AA-A010-01 21 47811237 47811237 C T PCNT Missense_Mutation p.R1388C 0.38 benign(0) TCGA-AA-A010-01 21 47957398 47957398 G A DIP2A Missense_Mutation p.A583T 0.36 tolerated(0.22) probably_damaging(0.998) TCGA-AA-A010-01 21 9907347 9907347 T C TEKT4P2 RNA 0.33 TCGA-AA-A010-01 22 16256650 16256650 C A POTEH 3'UTR 0.09 TCGA-AA-A010-01 22 16449179 16449179 C A OR11H1 Missense_Mutation p.R209I 0.40 tolerated(0.34) benign(0.006) TCGA-AA-A010-01 22 17119563 17119563 C T TPTEP1 RNA 0.52 TCGA-AA-A010-01 22 17583029 17583029 G A IL17RA Missense_Mutation p.G200D 0.69 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 22 18020202 18020202 C T CECR2 Nonsense_Mutation p.R512* 0.48 TCGA-AA-A010-01 22 18020356 18020356 C T CECR2 Missense_Mutation p.P563L 0.34 deleterious(0) benign(0.047) TCGA-AA-A010-01 22 18095984 18095984 T C ATP6V1E1 Missense_Mutation p.K68E 0.36 deleterious(0) possibly_damaging(0.512) TCGA-AA-A010-01 22 18210331 18210331 T G BCL2L13 3'UTR 0.49 TCGA-AA-A010-01 22 18210360 18210360 T C BCL2L13 3'UTR 0.19 TCGA-AA-A010-01 22 18570773 18570773 G A PEX26 Missense_Mutation p.A284T 0.41 tolerated(0.33) benign(0.29) TCGA-AA-A010-01 22 18767033 18767033 C A GGT3P RNA 0.72 TCGA-AA-A010-01 22 18910676 18910676 G A PRODH Silent p.D228D 0.36 TCGA-AA-A010-01 22 18912607 18912607 G A PRODH Silent p.C208C 0.40 TCGA-AA-A010-01 22 18981953 18981953 C T DGCR5 RNA 0.36 TCGA-AA-A010-01 22 19006314 19006314 C T DGCR9 RNA 0.55 TCGA-AA-A010-01 22 19118766 19118766 G T TSSK2 5'UTR 0.40 TCGA-AA-A010-01 22 19119811 19119811 A G TSSK2 Missense_Mutation p.D300G 0.44 tolerated_low_confidence(0.3) benign(0.009) TCGA-AA-A010-01 22 19263274 19263274 C T CLTCL1 Missense_Mutation p.R41Q 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 22 19429216 19429216 A G C22orf39 3'Flank 0.33 TCGA-AA-A010-01 22 19438185 19438185 G A UFD1L 3'UTR 0.38 TCGA-AA-A010-01 22 19512024 19512024 C T CLDN5 Missense_Mutation p.A4T 0.35 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-AA-A010-01 22 19707735 19707735 C T SEPT5 Silent p.F112F 0.31 TCGA-AA-A010-01 22 20094184 20094184 C T DGCR8 Silent p.Y653Y 0.43 TCGA-AA-A010-01 22 20457098 20457098 G A RIMBP3 Missense_Mutation p.P1402S 0.14 tolerated(0.39) benign(0.212) TCGA-AA-A010-01 22 20812221 20812221 G T KLHL22 Silent p.S393S 0.37 TCGA-AA-A010-01 22 21237844 21237844 C T SNAP29 Silent p.I202I 0.38 TCGA-AA-A010-01 22 21741434 21741434 G A RIMBP3B Missense_Mutation p.R1096H 0.73 tolerated(0.47) benign(0.014) TCGA-AA-A010-01 22 21800953 21800953 A G HIC2 Missense_Mutation p.E590G 0.43 deleterious(0) probably_damaging(0.913) TCGA-AA-A010-01 22 21988516 21988516 C T CCDC116 Missense_Mutation p.A93V 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 22 22020409 22020409 A G PPIL2 Silent p.Q7Q 0.40 TCGA-AA-A010-01 22 22123487 22123487 A C MAPK1 3'UTR 0.39 TCGA-AA-A010-01 22 22142617 22142617 T G MAPK1 Missense_Mutation p.N262T 0.33 tolerated(0.38) benign(0.008) TCGA-AA-A010-01 22 22599670 22599670 G A VPREB1 Missense_Mutation p.R120H 0.43 tolerated(0.28) benign(0.003) TCGA-AA-A010-01 22 22724350 22724350 G A IGLV7-46 Silent p.R82R 0.23 TCGA-AA-A010-01 22 22730763 22730763 C A IGLV5-45 Silent p.R86R 0.32 TCGA-AA-A010-01 22 22749797 22749797 T G IGLV7-43 Nonsense_Mutation p.Y107* 0.33 TCGA-AA-A010-01 22 22842379 22842379 A G ZNF280B Missense_Mutation p.C449R 0.41 tolerated(0.16) benign(0.013) TCGA-AA-A010-01 22 22869252 22869252 C T ZNF280A Missense_Mutation p.A235T 0.34 tolerated(0.22) benign(0.028) TCGA-AA-A010-01 22 22899240 22899240 G A PRAME Missense_Mutation p.R5C 0.41 tolerated_low_confidence(0.14) benign(0.339) TCGA-AA-A010-01 22 23011091 23011091 C T IGLV3-27 Missense_Mutation p.R52W 0.31 deleterious(0.02) possibly_damaging(0.536) TCGA-AA-A010-01 22 23090202 23090202 A - IGLV3-16 Frame_Shift_Del p.K49Nfs*17 0.31 TCGA-AA-A010-01 22 23090307 23090307 C A IGLV3-16 Silent p.G82G 0.32 TCGA-AA-A010-01 22 23488846 23488846 G A RAB36 Missense_Mutation p.D81N 0.41 deleterious(0.03) benign(0.05) TCGA-AA-A010-01 22 23629452 23629452 G A BCR Missense_Mutation p.S838N 0.36 tolerated(1) benign(0) TCGA-AA-A010-01 22 24086481 24086481 C T ZNF70 Missense_Mutation p.D283N 0.31 tolerated(1) benign(0.283) TCGA-AA-A010-01 22 24087375 24087375 C A ZNF70 5'UTR 0.39 TCGA-AA-A010-01 22 24135823 24135823 G A SMARCB1 Missense_Mutation p.D104N 0.42 deleterious(0.01) possibly_damaging(0.83) TCGA-AA-A010-01 22 24220010 24220010 G A SLC2A11 Silent p.P220P 0.42 TCGA-AA-A010-01 22 24452738 24452738 C T CABIN1 Missense_Mutation p.R393W 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 22 24561577 24561577 C G CABIN1 Missense_Mutation p.L1664V 0.57 tolerated(0.14) probably_damaging(0.977) TCGA-AA-A010-01 22 24659679 24659679 G A POM121L9P RNA 0.33 TCGA-AA-A010-01 22 24898307 24898307 C A UPB1 Intron 0.39 TCGA-AA-A010-01 22 24985908 24985908 G T FAM211B Missense_Mutation p.L63I 0.39 deleterious(0.03) benign(0.359) TCGA-AA-A010-01 22 25243761 25243761 C T SGSM1 Silent p.S100S 0.42 TCGA-AA-A010-01 22 25315953 25315953 C A SGSM1 Missense_Mutation p.F1117L 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 22 25777529 25777529 C T LRP5L 5'UTR 0.43 TCGA-AA-A010-01 22 26177741 26177741 A C MYO18B Missense_Mutation p.E751A 0.46 tolerated(0.24) benign(0.017) TCGA-AA-A010-01 22 26270322 26270322 G A MYO18B Missense_Mutation p.V1341I 0.46 tolerated(0.7) benign(0.01) TCGA-AA-A010-01 22 26423669 26423669 G T MYO18B Intron 0.35 TCGA-AA-A010-01 22 26860267 26860267 G A HPS4 Silent p.L443L 0.35 TCGA-AA-A010-01 22 26887469 26887469 C A SRRD Nonsense_Mutation p.S284* 0.34 TCGA-AA-A010-01 22 26888411 26888411 G A SRRD 3'UTR 0.34 TCGA-AA-A010-01 22 27008107 27008107 G T CRYBB1 Missense_Mutation p.F76L 0.38 tolerated(1) benign(0.082) TCGA-AA-A010-01 22 27008142 27008142 C T CRYBB1 Missense_Mutation p.E65K 0.33 deleterious(0) probably_damaging(0.963) TCGA-AA-A010-01 22 27018598 27018598 A T CRYBA4 Missense_Mutation p.K13M 0.34 deleterious(0) possibly_damaging(0.725) TCGA-AA-A010-01 22 27024372 27024372 T C CRYBA4 Missense_Mutation p.S141P 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 22 28194838 28194838 T G MN1 Missense_Mutation p.N565T 0.23 benign(0.052) TCGA-AA-A010-01 22 28379756 28379756 C T TTC28 Missense_Mutation p.A1967T 0.41 tolerated_low_confidence(0.26) benign(0.003) TCGA-AA-A010-01 22 28426330 28426330 C A TTC28 Missense_Mutation p.E1319D 0.32 tolerated(0.18) benign(0.174) TCGA-AA-A010-01 22 29179621 29179621 T G CCDC117 Missense_Mutation p.M197R 0.40 deleterious(0) benign(0.003) TCGA-AA-A010-01 22 29195130 29195130 T C XBP1 Missense_Mutation p.N80S 0.41 deleterious(0.01) possibly_damaging(0.645) TCGA-AA-A010-01 22 29454691 29454691 C A C22orf31 3'UTR 0.38 TCGA-AA-A010-01 22 29611518 29611518 A G EMID1 Missense_Mutation p.Y73C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 22 29885175 29885175 G T NEFH Missense_Mutation p.A516S 0.48 tolerated(0.1) unknown(0) TCGA-AA-A010-01 22 29885421 29885421 G A NEFH Missense_Mutation p.A598T 0.40 tolerated(0.14) possibly_damaging(0.682) TCGA-AA-A010-01 22 29945123 29945123 G A THOC5 Missense_Mutation p.S5L 0.37 tolerated(0.08) possibly_damaging(0.602) TCGA-AA-A010-01 22 30165868 30165868 A G UQCR10 3'UTR 0.35 TCGA-AA-A010-01 22 30387543 30387543 A G MTMR3 Missense_Mutation p.N115S 0.20 tolerated(0.55) benign(0.348) TCGA-AA-A010-01 22 30415931 30415931 C T MTMR3 Silent p.F761F 0.47 TCGA-AA-A010-01 22 30661134 30661134 C T OSM Splice_Site p.X12_splice 0.41 TCGA-AA-A010-01 22 30890140 30890140 G A SEC14L4 Nonsense_Mutation p.R193* 0.36 TCGA-AA-A010-01 22 31019040 31019040 C A TCN2 Missense_Mutation p.L398I 0.43 tolerated(0.05) benign(0.393) TCGA-AA-A010-01 22 31032627 31032627 T C SLC35E4 Missense_Mutation p.S64P 0.38 tolerated(0.06) probably_damaging(0.937) TCGA-AA-A010-01 22 31483984 31483984 C T SMTN Missense_Mutation p.R29C 0.42 deleterious(0) possibly_damaging(0.685) TCGA-AA-A010-01 22 31524183 31524183 T C INPP5J Intron 0.07 TCGA-AA-A010-01 22 31529402 31529402 G A INPP5J Missense_Mutation p.R413H 0.33 deleterious(0.01) benign(0.063) TCGA-AA-A010-01 22 31536003 31536003 C A PLA2G3 Missense_Mutation p.S113I 0.34 deleterious(0.01) possibly_damaging(0.575) TCGA-AA-A010-01 22 31621780 31621780 G A RNU6-1128P 5'Flank 0.35 TCGA-AA-A010-01 22 31737575 31737575 G A PATZ1 Intron 0.33 TCGA-AA-A010-01 22 31927079 31927079 G A SFI1 Missense_Mutation p.R101Q 0.35 tolerated(0.1) benign(0.346) TCGA-AA-A010-01 22 32003926 32003926 C A SFI1 Missense_Mutation p.L721M 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 22 32110409 32110409 G T PRR14L Missense_Mutation p.S1139Y 0.30 deleterious(0.04) probably_damaging(0.971) TCGA-AA-A010-01 22 32110660 32110660 G A PRR14L Silent p.I1055I 0.34 TCGA-AA-A010-01 22 32330147 32330147 A C C22orf24 Missense_Mutation p.I147S 0.38 tolerated_low_confidence(0.54) possibly_damaging(0.702) TCGA-AA-A010-01 22 32881122 32881122 A T FBXO7 Missense_Mutation p.Y238F 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 22 32883792 32883792 C A FBXO7 Missense_Mutation p.S283Y 0.40 deleterious(0) possibly_damaging(0.707) TCGA-AA-A010-01 22 33254006 33254006 C T TIMP3 Missense_Mutation p.R107C 0.31 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 22 33264971 33264971 G T SYN3 Missense_Mutation p.F201L 0.36 tolerated(0.13) unknown(0) TCGA-AA-A010-01 22 35659200 35659200 C A HMGXB4 Missense_Mutation p.S54Y 0.38 deleterious(0) benign(0.235) TCGA-AA-A010-01 22 35661066 35661066 C T HMGXB4 Missense_Mutation p.R229W 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 22 35782719 35782719 G T HMOX1 Missense_Mutation p.E62D 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 22 35812693 35812693 C T MCM5 Silent p.F492F 0.37 TCGA-AA-A010-01 22 36122486 36122486 C T APOL5 Missense_Mutation p.A124V 0.43 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A010-01 22 36624107 36624107 C G APOL2 Silent p.V119V 0.42 TCGA-AA-A010-01 22 36662244 36662244 C A APOL1 3'UTR 0.35 TCGA-AA-A010-01 22 36680169 36680169 C T MYH9 Missense_Mutation p.R1912H 0.39 probably_damaging(0.973) TCGA-AA-A010-01 22 36718496 36718496 T C MYH9 Missense_Mutation p.K228R 0.30 probably_damaging(0.999) TCGA-AA-A010-01 22 36916708 36916708 G A EIF3D Missense_Mutation p.R165C 0.41 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 22 37260972 37260972 C T NCF4 Silent p.I43I 0.41 TCGA-AA-A010-01 22 37319321 37319321 G A CSF2RB Missense_Mutation p.D38N 0.34 deleterious(0.03) benign(0.319) TCGA-AA-A010-01 22 37325570 37325570 T C CSF2RB Missense_Mutation p.V173A 0.43 deleterious(0.01) possibly_damaging(0.708) TCGA-AA-A010-01 22 37449184 37449184 C T KCTD17 Silent p.F85F 0.34 TCGA-AA-A010-01 22 37535161 37535161 C T IL2RB Silent p.E128E 0.28 TCGA-AA-A010-01 22 37539611 37539611 A G IL2RB Silent p.D51D 0.40 TCGA-AA-A010-01 22 37581316 37581316 G A C1QTNF6 Silent p.S77S 0.36 TCGA-AA-A010-01 22 37622776 37622776 G T RAC2 Silent p.A172A 0.40 TCGA-AA-A010-01 22 37637112 37637112 T C RAC2 Intron 0.42 TCGA-AA-A010-01 22 38016894 38016894 A C GGA1 Missense_Mutation p.I168L 0.38 deleterious(0.04) benign(0.196) TCGA-AA-A010-01 22 38120766 38120766 C T TRIOBP Missense_Mutation p.R735C 0.39 deleterious_low_confidence(0) benign(0.001) TCGA-AA-A010-01 22 38202809 38202809 C A H1F0 3'UTR 0.41 TCGA-AA-A010-01 22 38273692 38273692 G A EIF3L Silent p.Q363Q 0.35 TCGA-AA-A010-01 22 38282822 38282822 C A EIF3L Missense_Mutation p.F542L 0.35 deleterious(0.01) possibly_damaging(0.808) TCGA-AA-A010-01 22 38302498 38302498 G T MICALL1 Missense_Mutation p.E23D 0.42 tolerated(0.28) benign(0.006) TCGA-AA-A010-01 22 38340498 38340498 C A C22orf23 Nonsense_Mutation p.E170* 0.40 TCGA-AA-A010-01 22 38524438 38524438 C A PLA2G6 Splice_Site p.X396_splice 0.39 TCGA-AA-A010-01 22 38617479 38617479 G A TMEM184B Silent p.F407F 0.39 TCGA-AA-A010-01 22 38699172 38699172 C A CSNK1E Missense_Mutation p.S53I 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A010-01 22 38881997 38881997 C T DDX17 Silent p.G713G 0.41 TCGA-AA-A010-01 22 38884169 38884169 G A DDX17 Intron 0.44 TCGA-AA-A010-01 22 38958363 38958363 G T DMC1 Missense_Mutation p.F85L 0.37 deleterious(0.01) benign(0.27) TCGA-AA-A010-01 22 38964210 38964210 C T DMC1 Splice_Site p.X17_splice 0.40 TCGA-AA-A010-01 22 38978760 38978760 C T FAM227A Intron 0.20 TCGA-AA-A010-01 22 38979021 38979021 G T FAM227A Intron 0.41 TCGA-AA-A010-01 22 39175577 39175577 G A DNAL4 Silent p.F65F 0.31 TCGA-AA-A010-01 22 39178855 39178855 A C DNAL4 5'UTR 0.42 TCGA-AA-A010-01 22 39382080 39382080 G T APOBEC3B Silent p.T146T 0.33 TCGA-AA-A010-01 22 39712841 39712841 T G RPL3 Missense_Mutation p.K124T 0.31 deleterious(0.03) benign(0.202) TCGA-AA-A010-01 22 39884006 39884006 C T MGAT3 Silent p.F218F 0.41 TCGA-AA-A010-01 22 39884940 39884940 G A MGAT3 Missense_Mutation p.E530K 0.36 tolerated_low_confidence(0.93) benign(0) TCGA-AA-A010-01 22 39886931 39886931 G A MGAT3 3'UTR 0.37 TCGA-AA-A010-01 22 40060136 40060136 C T CACNA1I Missense_Mutation p.A1213V 0.34 tolerated(0.21) possibly_damaging(0.787) TCGA-AA-A010-01 22 40161538 40161538 G T ENTHD1 Silent p.I303I 0.26 TCGA-AA-A010-01 22 40745911 40745911 G A ADSL Missense_Mutation p.A77T 0.37 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 22 40814409 40814409 C T MKL1 Missense_Mutation p.S678N 0.03 tolerated(0.33) benign(0.051) TCGA-AA-A010-01 22 41257666 41257666 G T DNAJB7 Missense_Mutation p.F111L 0.38 tolerated(0.09) benign(0.038) TCGA-AA-A010-01 22 41277971 41277971 T A XPNPEP3 Missense_Mutation p.F127I 0.38 tolerated(0.1) benign(0.261) TCGA-AA-A010-01 22 41513347 41513347 T C EP300 Missense_Mutation p.L84S 0.29 unknown(0) TCGA-AA-A010-01 22 41545043 41545043 C T EP300 Missense_Mutation p.P748L 0.36 unknown(0) TCGA-AA-A010-01 22 41556696 41556696 C A EP300 Missense_Mutation p.S1214Y 0.38 possibly_damaging(0.885) TCGA-AA-A010-01 22 41572350 41572350 C T EP300 Missense_Mutation p.R1627W 0.32 probably_damaging(0.999) TCGA-AA-A010-01 22 41620226 41620226 G A L3MBTL2 Missense_Mutation p.R382Q 0.30 tolerated(0.28) benign(0.031) TCGA-AA-A010-01 22 41621883 41621883 C T L3MBTL2 Missense_Mutation p.S481F 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 22 41623278 41623278 C T L3MBTL2 Silent p.V591V 0.38 TCGA-AA-A010-01 22 42042972 42042972 G T XRCC6 Missense_Mutation p.K282N 0.35 deleterious(0) probably_damaging(0.912) TCGA-AA-A010-01 22 42091155 42091155 G T C22orf46 3'UTR 0.37 TCGA-AA-A010-01 22 42094139 42094139 G A C22orf46 3'UTR 0.27 TCGA-AA-A010-01 22 42095614 42095614 C T MEI1 Silent p.F24F 0.45 TCGA-AA-A010-01 22 42377841 42377841 G A SEPT3 Splice_Site p.X68_splice 0.39 TCGA-AA-A010-01 22 42382025 42382025 G A SEPT3 Silent p.T80T 0.33 TCGA-AA-A010-01 22 42383642 42383642 A G SEPT3 Missense_Mutation p.K144E 0.33 tolerated(0.08) probably_damaging(0.992) TCGA-AA-A010-01 22 42525897 42525897 G A CYP2D6 Silent p.F65F 0.39 TCGA-AA-A010-01 22 42606525 42606525 C T TCF20 Missense_Mutation p.R1596Q 0.40 probably_damaging(0.937) TCGA-AA-A010-01 22 42611209 42611209 C T TCF20 Missense_Mutation p.A35T 0.36 benign(0.007) TCGA-AA-A010-01 22 42611313 42611313 C A TCF20 5'UTR 0.34 TCGA-AA-A010-01 22 43027454 43027454 G T CYB5R3 Silent p.I85I 0.37 TCGA-AA-A010-01 22 43195097 43195097 G A ARFGAP3 Missense_Mutation p.S494L 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A010-01 22 43278311 43278311 C A PACSIN2 Splice_Site p.X262_splice 0.32 TCGA-AA-A010-01 22 43284694 43284694 C A PACSIN2 Missense_Mutation p.K188N 0.36 deleterious(0) probably_damaging(0.963) TCGA-AA-A010-01 22 43442424 43442424 G A TTLL1 Silent p.Y378Y 0.41 TCGA-AA-A010-01 22 44368176 44368176 T C SAMM50 Missense_Mutation p.L128S 0.37 deleterious(0) benign(0.302) TCGA-AA-A010-01 22 44594538 44594538 A G PARVG Missense_Mutation p.Q250R 0.36 tolerated(0.54) benign(0.098) TCGA-AA-A010-01 22 44696786 44696786 C T KIAA1644 Missense_Mutation p.V14I 0.33 tolerated(0.15) benign(0.025) TCGA-AA-A010-01 22 45258273 45258273 A C PRR5-ARHGAP8 Missense_Mutation p.N577T 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.844) TCGA-AA-A010-01 22 45312287 45312287 G A PHF21B Missense_Mutation p.A146V 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-AA-A010-01 22 45567053 45567053 T G NUP50 Intron 0.43 TCGA-AA-A010-01 22 45779389 45779389 C A SMC1B Missense_Mutation p.K672N 0.37 tolerated(1) benign(0.003) TCGA-AA-A010-01 22 45795014 45795014 A C SMC1B Missense_Mutation p.I358M 0.35 tolerated(0.24) benign(0.016) TCGA-AA-A010-01 22 45818271 45818271 G T RIBC2 Missense_Mutation p.D215Y 0.39 deleterious(0) possibly_damaging(0.819) TCGA-AA-A010-01 22 45929034 45929034 C A FBLN1 Silent p.V212V 0.32 TCGA-AA-A010-01 22 45929036 45929036 C T FBLN1 Missense_Mutation p.S213F 0.32 deleterious(0) possibly_damaging(0.831) TCGA-AA-A010-01 22 46654026 46654026 G A PKDREJ Missense_Mutation p.R1732C 0.33 deleterious(0.03) benign(0.017) TCGA-AA-A010-01 22 46654818 46654818 G A PKDREJ Missense_Mutation p.P1468S 0.41 tolerated(0.07) possibly_damaging(0.539) TCGA-AA-A010-01 22 46658689 46658689 G A PKDREJ Silent p.F177F 0.26 TCGA-AA-A010-01 22 46674532 46674532 G A TTC38 Missense_Mutation p.D197N 0.39 deleterious(0.01) benign(0.26) TCGA-AA-A010-01 22 46748174 46748174 G A TRMU Missense_Mutation p.R240Q 0.41 tolerated(0.19) benign(0.015) TCGA-AA-A010-01 22 46931986 46931986 C T CELSR1 Missense_Mutation p.R361H 0.40 tolerated(0.12) possibly_damaging(0.871) TCGA-AA-A010-01 22 47022841 47022841 G A GRAMD4 Missense_Mutation p.E49K 0.35 deleterious(0.01) benign(0.094) TCGA-AA-A010-01 22 47086069 47086069 C T CERK Missense_Mutation p.R454H 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 22 50167737 50167737 T G BRD1 3'UTR 0.36 TCGA-AA-A010-01 22 50307136 50307136 G A ALG12 Silent p.V64V 0.30 TCGA-AA-A010-01 22 50439551 50439551 G A IL17REL Silent p.C23C 0.33 TCGA-AA-A010-01 22 50599837 50599837 C T MOV10L1 Missense_Mutation p.P1199S 0.35 tolerated_low_confidence(0.09) benign(0) TCGA-AA-A010-01 22 50685325 50685325 C T HDAC10 Missense_Mutation p.G498D 0.39 tolerated(0.24) possibly_damaging(0.461) TCGA-AA-A010-01 22 50688876 50688876 C T HDAC10 Missense_Mutation p.D91N 0.34 tolerated(0.12) benign(0.113) TCGA-AA-A010-01 22 50716359 50716359 G T PLXNB2 Missense_Mutation p.F1657L 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 22 50754816 50754816 G A DENND6B Missense_Mutation p.A181V 0.38 tolerated(0.14) benign(0.001) TCGA-AA-A010-01 22 50757283 50757283 C T DENND6B Silent p.S84S 0.39 TCGA-AA-A010-01 22 50900736 50900736 C T SBF1 Missense_Mutation p.S765N 0.29 deleterious(0.01) possibly_damaging(0.72) TCGA-AA-A010-01 22 50945309 50945309 G A LMF2 Silent p.L84L 0.41 TCGA-AA-A010-01 22 50967743 50967743 A C TYMP Missense_Mutation p.L80R 0.46 deleterious(0.01) possibly_damaging(0.882) TCGA-AA-A010-01 22 50994805 50994805 G T SYCE3 Missense_Mutation p.N10K 0.32 tolerated_low_confidence(0.07) benign(0.001) TCGA-AA-A010-01 22 51042271 51042271 G A MAPK8IP2 Silent p.E181E 0.55 TCGA-AA-A010-01 22 51043467 51043467 C T MAPK8IP2 Silent p.F579F 0.36 TCGA-AA-A010-01 2 100017814 100017814 G A REV1 Silent p.L1216L 0.29 TCGA-AA-A010-01 2 100210108 100210108 G A AFF3 Missense_Mutation p.S697F 0.47 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 2 100623902 100623902 G T AFF3 Silent p.L90L 0.36 TCGA-AA-A010-01 2 100903482 100903482 G T LONRF2 Missense_Mutation p.S655Y 0.34 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A010-01 2 100910769 100910769 C T LONRF2 Missense_Mutation p.R560H 0.31 tolerated(0.17) possibly_damaging(0.841) TCGA-AA-A010-01 2 100910782 100910782 C T LONRF2 Missense_Mutation p.V556I 0.32 tolerated(0.85) possibly_damaging(0.814) TCGA-AA-A010-01 2 101089260 101089260 T G NMS Missense_Mutation p.F27C 0.36 deleterious(0) possibly_damaging(0.72) TCGA-AA-A010-01 2 101580599 101580599 C A NPAS2 Missense_Mutation p.F226L 0.33 tolerated(0.71) probably_damaging(0.993) TCGA-AA-A010-01 2 101622541 101622541 C A RPL31 Intron 0.26 TCGA-AA-A010-01 2 101874342 101874342 C T CNOT11 Missense_Mutation p.R202C 0.39 deleterious(0.03) benign(0.353) TCGA-AA-A010-01 2 102027134 102027134 G T RFX8 Missense_Mutation p.L254I 0.31 tolerated(0.83) benign(0.144) TCGA-AA-A010-01 2 102636134 102636134 T G IL1R2 Missense_Mutation p.F183C 0.40 deleterious(0.02) possibly_damaging(0.88) TCGA-AA-A010-01 2 102855673 102855673 G T IL1RL2 Missense_Mutation p.R567I 0.37 deleterious_low_confidence(0.01) benign(0.014) TCGA-AA-A010-01 2 103006577 103006577 C A IL18R1 Silent p.I337I 0.33 TCGA-AA-A010-01 2 103011078 103011078 C T IL18R1 Missense_Mutation p.P421S 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 2 103148958 103148958 C A SLC9A4 Nonsense_Mutation p.Y736* 0.40 TCGA-AA-A010-01 2 103335080 103335080 G A MFSD9 Silent p.S408S 0.44 TCGA-AA-A010-01 2 103378612 103378612 G T TMEM182 5'UTR 0.43 TCGA-AA-A010-01 2 105883853 105883853 C T TGFBRAP1 Missense_Mutation p.G857D 0.42 tolerated_low_confidence(0.08) benign(0.054) TCGA-AA-A010-01 2 105961823 105961823 C A C2orf49 Missense_Mutation p.P232T 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 105979817 105979817 C A FHL2 Missense_Mutation p.D205Y 0.39 deleterious(0) probably_damaging(0.938) TCGA-AA-A010-01 2 106497917 106497917 C T NCK2 Silent p.F120F 0.34 TCGA-AA-A010-01 2 107050751 107050751 C A RGPD3 Missense_Mutation p.R713I 0.32 deleterious(0.04) possibly_damaging(0.648) TCGA-AA-A010-01 2 107459984 107459984 G T ST6GAL2 Missense_Mutation p.F150L 0.41 benign(0.001) TCGA-AA-A010-01 2 108476236 108476236 G A RGPD4 Missense_Mutation p.A565T 0.32 tolerated(0.09) benign(0.001) TCGA-AA-A010-01 2 108487564 108487564 A G RGPD4 Missense_Mutation p.D1035G 0.28 tolerated(0.13) benign(0.103) TCGA-AA-A010-01 2 108626825 108626825 C A SLC5A7 Silent p.I417I 0.32 TCGA-AA-A010-01 2 109087376 109087376 G T GCC2 Missense_Mutation p.D531Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 2 109088004 109088004 A T GCC2 Missense_Mutation p.N740I 0.40 deleterious(0.05) benign(0.08) TCGA-AA-A010-01 2 109382073 109382073 A C RANBP2 Missense_Mutation p.K1693T 0.32 tolerated(0.35) benign(0.044) TCGA-AA-A010-01 2 109529133 109529133 C T EDAR Splice_Site p.X177_splice 0.37 TCGA-AA-A010-01 2 109964319 109964319 C T SH3RF3 Missense_Mutation p.P255S 0.33 tolerated(0.15) benign(0.191) TCGA-AA-A010-01 2 110927435 110927435 T C NPHP1 Missense_Mutation p.Y157C 0.45 tolerated(0.34) benign(0.028) TCGA-AA-A010-01 2 111414655 111414655 G T BUB1 Silent p.T552T 0.38 TCGA-AA-A010-01 2 111419244 111419244 T C BUB1 Missense_Mutation p.T378A 0.39 tolerated(0.85) benign(0) TCGA-AA-A010-01 2 111881594 111881594 G A BCL2L11 Missense_Mutation p.R91Q 0.37 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 2 112592219 112592219 T G ANAPC1 Silent p.G782G 0.34 TCGA-AA-A010-01 2 112856196 112856196 G A TMEM87B Missense_Mutation p.D433N 0.34 deleterious(0) probably_damaging(0.939) TCGA-AA-A010-01 2 113080289 113080289 C T ZC3H6 Missense_Mutation p.R384C 0.35 tolerated(0.06) benign(0.007) TCGA-AA-A010-01 2 113145882 113145882 C A RGPD8 Missense_Mutation p.R1547I 0.35 deleterious(0.01) benign(0.102) TCGA-AA-A010-01 2 113146877 113146877 G T RGPD8 Silent p.V1215V 0.38 TCGA-AA-A010-01 2 113417141 113417141 C T SLC20A1 Missense_Mutation p.A470V 0.35 deleterious(0.02) possibly_damaging(0.897) TCGA-AA-A010-01 2 113500367 113500367 A G NT5DC4 3'UTR 0.31 TCGA-AA-A010-01 2 113785433 113785433 G A IL36B Intron 0.16 TCGA-AA-A010-01 2 113820271 113820271 G T IL36RN 3'UTR 0.42 TCGA-AA-A010-01 2 11389837 11389837 A - ROCK2 Frame_Shift_Del p.W138Gfs*31 0.29 TCGA-AA-A010-01 2 114699919 114699919 A C ACTR3 Missense_Mutation p.I281L 0.36 tolerated(0.17) benign(0.102) TCGA-AA-A010-01 2 116257177 116257177 T G DPP10 Silent p.T125T 0.32 TCGA-AA-A010-01 2 116548679 116548679 T A DPP10 Missense_Mutation p.N522K 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 116573277 116573277 A G DPP10 Missense_Mutation p.D645G 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 2 116598367 116598367 C A DPP10 Missense_Mutation p.L746I 0.41 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 2 11696778 11696778 G A GREB1 Missense_Mutation p.R13H 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 2 11716531 11716531 G A GREB1 Silent p.T169T 0.37 TCGA-AA-A010-01 2 11731737 11731737 C T GREB1 Intron 0.39 TCGA-AA-A010-01 2 11761108 11761108 C A GREB1 Silent p.V1374V 0.37 TCGA-AA-A010-01 2 11773065 11773065 G A GREB1 Missense_Mutation p.E1623K 0.39 deleterious(0) possibly_damaging(0.625) TCGA-AA-A010-01 2 118706917 118706917 C A CCDC93 Nonsense_Mutation p.E375* 0.37 TCGA-AA-A010-01 2 11944576 11944576 A G LPIN1 Missense_Mutation p.N730D 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 119600629 119600629 C T EN1 Missense_Mutation p.R355H 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 119739972 119739972 G A MARCO Missense_Mutation p.S350N 0.35 deleterious(0.02) unknown(0) TCGA-AA-A010-01 2 120221723 120221723 A C SCTR Missense_Mutation p.D204E 0.40 tolerated(0.54) probably_damaging(1) TCGA-AA-A010-01 2 120404537 120404537 C T PCDP1 Silent p.C743C 0.38 TCGA-AA-A010-01 2 120409630 120409630 A G PCDP1 Missense_Mutation p.D800G 0.34 tolerated(0.11) possibly_damaging(0.619) TCGA-AA-A010-01 2 120438766 120438766 G T TMEM177 Missense_Mutation p.D113Y 0.36 deleterious(0.01) benign(0.231) TCGA-AA-A010-01 2 121043635 121043635 C A RALB Silent p.S100S 0.40 TCGA-AA-A010-01 2 121107354 121107354 G A INHBB Silent p.K376K 0.37 TCGA-AA-A010-01 2 121740294 121740294 C T GLI2 Silent p.F507F 0.34 TCGA-AA-A010-01 2 121995203 121995203 G A TFCP2L1 Silent p.F333F 0.36 TCGA-AA-A010-01 2 122106151 122106151 G A CLASP1 Silent p.V1450V 0.37 TCGA-AA-A010-01 2 124783199 124783199 G A CNTNAP5 5'UTR 0.43 TCGA-AA-A010-01 2 125192060 125192060 G T CNTNAP5 Splice_Site p.X177_splice 0.41 TCGA-AA-A010-01 2 125367382 125367382 C A CNTNAP5 Silent p.I586I 0.30 TCGA-AA-A010-01 2 125547521 125547521 G A CNTNAP5 Missense_Mutation p.R931H 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 127809893 127809893 C T BIN1 Missense_Mutation p.A437T 0.34 tolerated(0.11) benign(0.001) TCGA-AA-A010-01 2 127951417 127951417 C T CYP27C1 Missense_Mutation p.G249D 0.44 deleterious(0) probably_damaging(0.914) TCGA-AA-A010-01 2 128044543 128044543 G A ERCC3 Missense_Mutation p.R360C 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 2 128250973 128250973 C A IWS1 Nonsense_Mutation p.E605* 0.35 TCGA-AA-A010-01 2 128385999 128385999 G A MYO7B Missense_Mutation p.E1479K 0.38 tolerated(0.11) benign(0.011) TCGA-AA-A010-01 2 128399733 128399733 A C LIMS2 Missense_Mutation p.L208R 0.38 deleterious(0) probably_damaging(0.974) TCGA-AA-A010-01 2 128409277 128409277 G T GPR17 Missense_Mutation p.S351I 0.33 deleterious(0.03) possibly_damaging(0.545) TCGA-AA-A010-01 2 12864802 12864802 C T TRIB2 Intron 0.37 TCGA-AA-A010-01 2 128936084 128936084 A C UGGT1 Missense_Mutation p.K1252N 0.39 deleterious(0.03) possibly_damaging(0.675) TCGA-AA-A010-01 2 130738048 130738048 C A RAB6C Silent p.I120I 0.38 TCGA-AA-A010-01 2 130738535 130738535 C A RAB6C 3'UTR 0.30 TCGA-AA-A010-01 2 130739936 130739936 G A RAB6C 3'UTR 0.38 TCGA-AA-A010-01 2 130900270 130900270 C A CCDC74B Intron 0.38 TCGA-AA-A010-01 2 131099595 131099595 A G CCDC115 Missense_Mutation p.V35A 0.28 deleterious(0) possibly_damaging(0.834) TCGA-AA-A010-01 2 131099848 131099848 C A CCDC115 5'UTR 0.37 TCGA-AA-A010-01 2 131132198 131132198 C A PTPN18 3'UTR 0.31 TCGA-AA-A010-01 2 131487042 131487042 C A GPR148 Silent p.I106I 0.35 TCGA-AA-A010-01 2 131519914 131519914 G A AMER3 Missense_Mutation p.R90Q 0.37 tolerated(0.11) benign(0.184) TCGA-AA-A010-01 2 131985920 131985920 G A POTEE Missense_Mutation p.A341T 0.19 tolerated_low_confidence(0.09) benign(0.184) TCGA-AA-A010-01 2 132021504 132021504 A C POTEE Missense_Mutation p.T826P 0.32 deleterious_low_confidence(0.01) benign(0.289) TCGA-AA-A010-01 2 132266141 132266141 C T AC093838.4 RNA 0.31 TCGA-AA-A010-01 2 132276228 132276228 G A AC093838.4 RNA 0.37 TCGA-AA-A010-01 2 132480141 132480141 G A C2orf27A 5'UTR 0.37 TCGA-AA-A010-01 2 133174742 133174742 A G GPR39 Missense_Mutation p.M43V 0.38 tolerated(1) benign(0) TCGA-AA-A010-01 2 133174963 133174963 G T GPR39 Missense_Mutation p.E116D 0.40 tolerated(0.13) probably_damaging(0.992) TCGA-AA-A010-01 2 133540809 133540809 T C NCKAP5 Missense_Mutation p.D1192G 0.32 deleterious(0.04) benign(0.081) TCGA-AA-A010-01 2 133542771 133542771 G A NCKAP5 Missense_Mutation p.T538I 0.33 deleterious(0.02) benign(0.362) TCGA-AA-A010-01 2 135596203 135596203 C A ACMSD 5'UTR 0.32 TCGA-AA-A010-01 2 135630111 135630111 A G ACMSD Missense_Mutation p.D250G 0.36 deleterious(0.01) possibly_damaging(0.556) TCGA-AA-A010-01 2 135711614 135711614 C A CCNT2 Missense_Mutation p.S530Y 0.43 deleterious(0) possibly_damaging(0.613) TCGA-AA-A010-01 2 135738352 135738352 C T MAP3K19 Intron 0.38 TCGA-AA-A010-01 2 135744372 135744372 C T MAP3K19 Silent p.S690S 0.05 TCGA-AA-A010-01 2 135756494 135756494 C T MAP3K19 Missense_Mutation p.E130K 0.36 tolerated(0.18) benign(0.035) TCGA-AA-A010-01 2 136530108 136530108 G T UBXN4 Missense_Mutation p.R314I 0.33 deleterious(0.01) benign(0.061) TCGA-AA-A010-01 2 136546042 136546042 T G LCT Missense_Mutation p.E1879A 0.40 tolerated(0.15) benign(0.001) TCGA-AA-A010-01 2 136566722 136566722 C A LCT Missense_Mutation p.E1065D 0.46 tolerated(0.09) benign(0.084) TCGA-AA-A010-01 2 136873547 136873547 A C CXCR4 5'UTR 0.47 TCGA-AA-A010-01 2 138762743 138762743 C A HNMT Missense_Mutation p.F157L 0.39 tolerated(0.06) possibly_damaging(0.762) TCGA-AA-A010-01 2 140990769 140990769 C A LRP1B Nonsense_Mutation p.E4596* 0.55 TCGA-AA-A010-01 2 141116507 141116507 G T LRP1B Missense_Mutation p.L3714I 0.20 benign(0.003) TCGA-AA-A010-01 2 141128292 141128292 C A LRP1B Missense_Mutation p.E3665D 0.32 possibly_damaging(0.523) TCGA-AA-A010-01 2 141215139 141215139 G T LRP1B Nonsense_Mutation p.S3236* 0.41 TCGA-AA-A010-01 2 141232776 141232776 G A LRP1B Missense_Mutation p.R3186C 0.28 benign(0.001) TCGA-AA-A010-01 2 141253185 141253185 C T LRP1B Missense_Mutation p.D2995N 0.43 possibly_damaging(0.539) TCGA-AA-A010-01 2 141660547 141660547 C T LRP1B Silent p.K1236K 0.44 TCGA-AA-A010-01 2 141773306 141773306 C T LRP1B Missense_Mutation p.D717N 0.35 possibly_damaging(0.555) TCGA-AA-A010-01 2 142004876 142004876 T G LRP1B Missense_Mutation p.N171H 0.53 possibly_damaging(0.904) TCGA-AA-A010-01 2 142237979 142237979 C T LRP1B Missense_Mutation p.G110E 0.48 probably_damaging(0.982) TCGA-AA-A010-01 2 143642952 143642952 C A KYNU Missense_Mutation p.L6I 0.28 tolerated_low_confidence(0.39) benign(0.021) TCGA-AA-A010-01 2 143742750 143742750 A C KYNU Missense_Mutation p.K276T 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 143746426 143746426 C A KYNU Intron 0.40 TCGA-AA-A010-01 2 143798027 143798027 C T KYNU Missense_Mutation p.R358W 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 1440027 1440027 C T TPO Missense_Mutation p.A118V 0.34 tolerated(0.8) benign(0.001) TCGA-AA-A010-01 2 145156163 145156163 A C ZEB2 Missense_Mutation p.F864C 0.39 tolerated(0.95) benign(0.237) TCGA-AA-A010-01 2 145158785 145158785 T G ZEB2 Missense_Mutation p.E299D 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 2 145162452 145162452 C A ZEB2 Missense_Mutation p.E181D 0.42 tolerated(0.18) possibly_damaging(0.675) TCGA-AA-A010-01 2 1457562 1457562 C T TPO Silent p.P193P 0.10 TCGA-AA-A010-01 2 14775948 14775948 A G FAM84A 3'UTR 0.38 TCGA-AA-A010-01 2 148674866 148674866 G A ACVR2A Nonsense_Mutation p.W229* 0.23 TCGA-AA-A010-01 2 148693149 148693149 G T ORC4 Missense_Mutation p.A414D 0.33 deleterious(0) possibly_damaging(0.659) TCGA-AA-A010-01 2 149220245 149220245 C A MBD5 Missense_Mutation p.L70I 0.32 tolerated(0.05) unknown(0) TCGA-AA-A010-01 2 149227207 149227207 C A MBD5 Silent p.I565I 0.19 TCGA-AA-A010-01 2 149247928 149247928 A G MBD5 Missense_Mutation p.K1343R 0.40 tolerated_low_confidence(0.21) unknown(0) TCGA-AA-A010-01 2 149248083 149248083 G T MBD5 Nonsense_Mutation p.G1395* 0.38 TCGA-AA-A010-01 2 149793854 149793854 C A KIF5C Silent p.I116I 0.39 TCGA-AA-A010-01 2 149856978 149856978 C A KIF5C Missense_Mutation p.S751Y 0.37 deleterious(0.01) benign(0.005) TCGA-AA-A010-01 2 150071313 150071313 C A LYPD6B 3'UTR 0.29 TCGA-AA-A010-01 2 151331495 151331495 G T RND3 Missense_Mutation p.S81Y 0.54 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 2 152108159 152108159 G A RBM43 Missense_Mutation p.A112V 0.31 tolerated(0.13) benign(0.253) TCGA-AA-A010-01 2 152293377 152293377 G A RIF1 Missense_Mutation p.R411Q 0.40 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 2 152311475 152311475 T G RIF1 Missense_Mutation p.F804C 0.38 deleterious(0.01) possibly_damaging(0.896) TCGA-AA-A010-01 2 152311478 152311478 A C RIF1 Missense_Mutation p.K805T 0.27 tolerated(0.09) probably_damaging(0.995) TCGA-AA-A010-01 2 152330487 152330487 C T RIF1 Missense_Mutation p.R2369C 0.40 deleterious(0) possibly_damaging(0.886) TCGA-AA-A010-01 2 152350675 152350675 C A NEB Silent p.S8193S 0.38 TCGA-AA-A010-01 2 152374882 152374882 C T NEB Missense_Mutation p.D7584N 0.37 probably_damaging(1) TCGA-AA-A010-01 2 152376267 152376267 T G NEB Missense_Mutation p.N7499H 0.37 benign(0.242) TCGA-AA-A010-01 2 152390743 152390743 C T NEB Intron 0.52 TCGA-AA-A010-01 2 152418638 152418638 C T NEB Missense_Mutation p.D6328N 0.45 benign(0.073) TCGA-AA-A010-01 2 152426656 152426656 G A NEB Missense_Mutation p.T5790I 0.31 benign(0.034) TCGA-AA-A010-01 2 152506779 152506779 G A NEB Missense_Mutation p.R2448C 0.35 probably_damaging(1) TCGA-AA-A010-01 2 152506854 152506854 C A NEB Nonsense_Mutation p.G2423* 0.34 TCGA-AA-A010-01 2 152512926 152512926 C T NEB Missense_Mutation p.R2079H 0.33 probably_damaging(0.989) TCGA-AA-A010-01 2 152522864 152522864 G T NEB Missense_Mutation p.L1591I 0.44 benign(0.34) TCGA-AA-A010-01 2 152529066 152529066 C A NEB Missense_Mutation p.K1372N 0.33 probably_damaging(0.999) TCGA-AA-A010-01 2 152541423 152541423 C A NEB Missense_Mutation p.V902F 0.32 possibly_damaging(0.806) TCGA-AA-A010-01 2 152541474 152541474 C A NEB Missense_Mutation p.D885Y 0.37 probably_damaging(0.917) TCGA-AA-A010-01 2 152544209 152544209 C A NEB Missense_Mutation p.K818N 0.40 probably_damaging(0.999) TCGA-AA-A010-01 2 152550884 152550884 C T NEB Missense_Mutation p.D617N 0.37 probably_damaging(0.997) TCGA-AA-A010-01 2 152988669 152988669 C A STAM2 Missense_Mutation p.Q328H 0.34 deleterious(0.02) possibly_damaging(0.67) TCGA-AA-A010-01 2 153003791 153003791 G T STAM2 Missense_Mutation p.S111Y 0.31 deleterious(0.03) benign(0.227) TCGA-AA-A010-01 2 155102455 155102455 G T GALNT13 Nonsense_Mutation p.E273* 0.34 TCGA-AA-A010-01 2 155252620 155252620 G T GALNT13 Missense_Mutation p.R425I 0.38 tolerated(0.33) benign(0.004) TCGA-AA-A010-01 2 15542317 15542317 C A NBAS Nonsense_Mutation p.E1016* 0.41 TCGA-AA-A010-01 2 155566324 155566324 A T KCNJ3 Missense_Mutation p.E304D 0.36 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 2 15557674 15557674 T G NBAS Missense_Mutation p.K914Q 0.35 deleterious(0.04) benign(0.16) TCGA-AA-A010-01 2 155711415 155711415 C A KCNJ3 Missense_Mutation p.L366I 0.39 tolerated(0.4) benign(0.177) TCGA-AA-A010-01 2 155711555 155711555 T C KCNJ3 Silent p.F412F 0.33 TCGA-AA-A010-01 2 15615895 15615895 C A NBAS Missense_Mutation p.K419N 0.36 deleterious(0.01) probably_damaging(0.925) TCGA-AA-A010-01 2 157332647 157332647 G A GPD2 Silent p.T10T 0.38 TCGA-AA-A010-01 2 159033082 159033082 A C CCDC148 Missense_Mutation p.F527C 0.43 deleterious(0.04) probably_damaging(0.938) TCGA-AA-A010-01 2 159433884 159433884 C T PKP4 Silent p.I78I 0.44 TCGA-AA-A010-01 2 159514664 159514664 C A PKP4 Nonsense_Mutation p.S644* 0.34 TCGA-AA-A010-01 2 160112880 160112880 C T WDSUB1 Missense_Mutation p.R320H 0.30 tolerated(0.12) benign(0.003) TCGA-AA-A010-01 2 160136445 160136445 A G WDSUB1 Missense_Mutation p.V137A 0.39 tolerated(0.25) probably_damaging(0.997) TCGA-AA-A010-01 2 160335215 160335215 G A BAZ2B Missense_Mutation p.R6W 0.36 possibly_damaging(0.689) TCGA-AA-A010-01 2 160634463 160634463 C A LY75-CD302 Missense_Mutation p.R1802M 0.34 deleterious(0.01) possibly_damaging(0.461) TCGA-AA-A010-01 2 160661509 160661509 A C LY75 Intron 0.45 TCGA-AA-A010-01 2 160806200 160806200 C T PLA2R1 Missense_Mutation p.V1210I 0.35 deleterious(0) possibly_damaging(0.735) TCGA-AA-A010-01 2 160840477 160840477 C A PLA2R1 Missense_Mutation p.E715D 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 2 160843829 160843829 T G PLA2R1 Silent p.P625P 0.36 TCGA-AA-A010-01 2 160980353 160980353 C A ITGB6 Nonsense_Mutation p.E644* 0.39 TCGA-AA-A010-01 2 161030579 161030579 C A ITGB6 Missense_Mutation p.R222I 0.38 deleterious(0) benign(0.302) TCGA-AA-A010-01 2 161052046 161052046 C T ITGB6 Missense_Mutation p.A143T 0.33 tolerated(0.09) probably_damaging(1) TCGA-AA-A010-01 2 161143587 161143587 C A RBMS1 Nonsense_Mutation p.E217* 0.27 TCGA-AA-A010-01 2 162273304 162273304 G A TBR1 Missense_Mutation p.G128D 0.36 deleterious(0) benign(0.034) TCGA-AA-A010-01 2 162761335 162761335 C T SLC4A10 Missense_Mutation p.S556F 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 2 162815047 162815047 A G SLC4A10 Silent p.S948S 0.38 TCGA-AA-A010-01 2 163046212 163046212 G A FAP Silent p.I501I 0.27 TCGA-AA-A010-01 2 163134117 163134117 G A IFIH1 Nonsense_Mutation p.R618* 0.26 TCGA-AA-A010-01 2 163291907 163291907 G A KCNH7 Silent p.I585I 0.38 TCGA-AA-A010-01 2 164466925 164466925 T G FIGN Missense_Mutation p.T473P 0.44 deleterious(0.01) possibly_damaging(0.637) TCGA-AA-A010-01 2 164467864 164467864 C A FIGN Nonsense_Mutation p.E160* 0.32 TCGA-AA-A010-01 2 1648500 1648500 G A PXDN Silent p.I1211I 0.35 TCGA-AA-A010-01 2 1652013 1652013 G A PXDN Missense_Mutation p.S1180L 0.32 deleterious(0) possibly_damaging(0.763) TCGA-AA-A010-01 2 1652038 1652038 C T PXDN Missense_Mutation p.D1172N 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A010-01 2 165561522 165561522 C T COBLL1 Missense_Mutation p.A364T 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 165755096 165755096 C T SLC38A11 Missense_Mutation p.V358I 0.36 tolerated(0.71) benign(0.016) TCGA-AA-A010-01 2 165997322 165997322 G A SCN3A Nonsense_Mutation p.R620* 0.43 TCGA-AA-A010-01 2 166166894 166166894 C A SCN2A Silent p.I253I 0.35 TCGA-AA-A010-01 2 166183391 166183391 G T SCN2A Missense_Mutation p.K682N 0.27 tolerated(0.09) benign(0.263) TCGA-AA-A010-01 2 166183475 166183475 T A SCN2A Silent p.I710I 0.28 TCGA-AA-A010-01 2 166183489 166183489 T C SCN2A Missense_Mutation p.M715T 0.29 deleterious(0) benign(0.127) TCGA-AA-A010-01 2 166201317 166201317 C T SCN2A Silent p.L939L 0.38 TCGA-AA-A010-01 2 166243300 166243300 C A SCN2A Silent p.V1532V 0.23 TCGA-AA-A010-01 2 166605291 166605291 T G GALNT3 Nonstop_Mutation p.*634Yext*18 0.36 TCGA-AA-A010-01 2 166731205 166731205 G T TTC21B 3'UTR 0.34 TCGA-AA-A010-01 2 166731281 166731281 G A TTC21B Missense_Mutation p.A1312V 0.35 tolerated(0.15) benign(0.094) TCGA-AA-A010-01 2 1667423 1667423 G T PXDN Silent p.I507I 0.28 TCGA-AA-A010-01 2 166747426 166747426 A G TTC21B Missense_Mutation p.F1008S 0.39 deleterious(0) possibly_damaging(0.675) TCGA-AA-A010-01 2 166802084 166802084 C T TTC21B Missense_Mutation p.A127T 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 166892858 166892858 C A SCN1A Missense_Mutation p.K1043N 0.32 deleterious(0.04) benign(0.15) TCGA-AA-A010-01 2 166929911 166929911 G T SCN1A Nonsense_Mutation p.S74* 0.41 TCGA-AA-A010-01 2 167055153 167055153 G A SCN9A 3'UTR 0.40 TCGA-AA-A010-01 2 167089905 167089905 C T SCN9A Missense_Mutation p.R1279Q 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 2 167142906 167142906 G A SCN9A Silent p.F514F 0.29 TCGA-AA-A010-01 2 167289076 167289076 T G SCN7A Missense_Mutation p.N782H 0.39 tolerated(0.2) benign(0.119) TCGA-AA-A010-01 2 167334082 167334082 G T SCN7A Missense_Mutation p.P42H 0.37 tolerated(0.58) benign(0.235) TCGA-AA-A010-01 2 167760159 167760159 C A XIRP2 Missense_Mutation p.S56Y 0.32 benign(0.2) TCGA-AA-A010-01 2 1680706 1680706 G A PXDN Nonsense_Mutation p.R281* 0.40 TCGA-AA-A010-01 2 168099144 168099144 C T XIRP2 Silent p.C414C 0.48 TCGA-AA-A010-01 2 168100145 168100145 C T XIRP2 Missense_Mutation p.S748L 0.29 benign(0.006) TCGA-AA-A010-01 2 168105802 168105802 C T XIRP2 Missense_Mutation p.P2634S 0.46 benign(0.003) TCGA-AA-A010-01 2 168106476 168106476 C T XIRP2 Silent p.I2858I 0.44 TCGA-AA-A010-01 2 168108197 168108197 C T XIRP2 Missense_Mutation p.S3432L 0.55 probably_damaging(0.949) TCGA-AA-A010-01 2 168114792 168114792 C A XIRP2 3'UTR 0.35 TCGA-AA-A010-01 2 168115363 168115363 G T XIRP2 3'UTR 0.35 TCGA-AA-A010-01 2 168726970 168726970 C T B3GALT1 3'UTR 0.42 TCGA-AA-A010-01 2 169574389 169574389 A T CERS6 Missense_Mutation p.K249I 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 169787307 169787307 C T ABCB11 Silent p.S1093S 0.30 TCGA-AA-A010-01 2 169814541 169814541 G T ABCB11 Missense_Mutation p.S759Y 0.35 deleterious(0.02) possibly_damaging(0.89) TCGA-AA-A010-01 2 169826721 169826721 A C ABCB11 Missense_Mutation p.F548C 0.37 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 2 169842646 169842646 C A ABCB11 Nonsense_Mutation p.E353* 0.39 TCGA-AA-A010-01 2 170003385 170003385 G A LRP2 Silent p.F4225F 0.28 TCGA-AA-A010-01 2 170044605 170044605 C T LRP2 Missense_Mutation p.C3068Y 0.37 probably_damaging(1) TCGA-AA-A010-01 2 170048452 170048452 G A LRP2 Silent p.G2974G 0.28 TCGA-AA-A010-01 2 170060713 170060713 G T LRP2 Missense_Mutation p.A2595D 0.48 benign(0.315) TCGA-AA-A010-01 2 170094628 170094628 C T LRP2 Silent p.A1493A 0.39 TCGA-AA-A010-01 2 170097521 170097521 C A LRP2 Missense_Mutation p.G1341V 0.50 probably_damaging(0.992) TCGA-AA-A010-01 2 170103350 170103350 T G LRP2 Missense_Mutation p.N1019H 0.17 benign(0.002) TCGA-AA-A010-01 2 170129546 170129546 G A LRP2 Silent p.G669G 0.32 TCGA-AA-A010-01 2 170387153 170387153 C T FASTKD1 Missense_Mutation p.G796R 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 170487452 170487452 G A PPIG Missense_Mutation p.R239Q 0.32 tolerated(0.24) unknown(0) TCGA-AA-A010-01 2 170493348 170493348 G A PPIG Missense_Mutation p.S527N 0.40 tolerated_low_confidence(0.17) unknown(0) TCGA-AA-A010-01 2 170510656 170510656 C A CCDC173 Missense_Mutation p.K296N 0.40 deleterious(0.02) probably_damaging(0.95) TCGA-AA-A010-01 2 170537632 170537632 T G CCDC173 Missense_Mutation p.D60A 0.40 tolerated(0.07) benign(0.33) TCGA-AA-A010-01 2 170592044 170592044 G T KLHL23 Nonsense_Mutation p.E174* 0.32 TCGA-AA-A010-01 2 170667549 170667550 - A SSB Frame_Shift_Ins p.G333Rfs*3 0.27 TCGA-AA-A010-01 2 170677753 170677753 G A METTL5 Silent p.D85D 0.39 TCGA-AA-A010-01 2 170843165 170843165 G T UBR3 Missense_Mutation p.E1215D 0.42 tolerated(0.52) benign(0.003) TCGA-AA-A010-01 2 170850952 170850952 C T UBR3 Missense_Mutation p.R1302C 0.27 deleterious(0.01) possibly_damaging(0.65) TCGA-AA-A010-01 2 170912049 170912049 C T UBR3 Silent p.S1580S 0.38 TCGA-AA-A010-01 2 170936478 170936478 T G UBR3 Missense_Mutation p.F1785C 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A010-01 2 171070975 171070975 C A MYO3B Silent p.I136I 0.41 TCGA-AA-A010-01 2 171259490 171259490 T G MYO3B Silent p.V754V 0.52 TCGA-AA-A010-01 2 171323020 171323020 C A MYO3B Missense_Mutation p.S938Y 0.50 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 171323071 171323071 G A MYO3B Missense_Mutation p.R955H 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 171910320 171910320 T G TLK1 Missense_Mutation p.K228T 0.34 tolerated(0.07) benign(0.117) TCGA-AA-A010-01 2 172180563 172180563 A C METTL8 3'UTR 0.29 TCGA-AA-A010-01 2 172305324 172305324 T G DCAF17 Missense_Mutation p.F152C 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 172749728 172749728 T G SLC25A12 Missense_Mutation p.N18T 0.39 tolerated(0.5) benign(0.002) TCGA-AA-A010-01 2 172965440 172965440 G A DLX2 Missense_Mutation p.A273V 0.29 deleterious(0.01) benign(0.014) TCGA-AA-A010-01 2 173355817 173355817 T G ITGA6 Missense_Mutation p.F915L 0.42 tolerated(0.6) benign(0.007) TCGA-AA-A010-01 2 173882186 173882186 C T RAPGEF4 Silent p.G654G 0.45 TCGA-AA-A010-01 2 173891815 173891815 C T RAPGEF4 Silent p.L796L 0.29 TCGA-AA-A010-01 2 173916425 173916425 A T RAPGEF4 Missense_Mutation p.Q989L 0.34 tolerated(0.17) possibly_damaging(0.529) TCGA-AA-A010-01 2 174034561 174034561 G A MLTK Missense_Mutation p.R63K 0.36 tolerated(0.35) benign(0.046) TCGA-AA-A010-01 2 174068565 174068565 A C MLTK Missense_Mutation p.E237D 0.37 tolerated(0.08) probably_damaging(0.951) TCGA-AA-A010-01 2 174231050 174231050 A G CDCA7 Missense_Mutation p.T359A 0.39 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 2 175213353 175213353 G A CIR1 Nonsense_Mutation p.R409* 0.37 TCGA-AA-A010-01 2 175292666 175292666 T G SCRN3 3'UTR 0.31 TCGA-AA-A010-01 2 175431873 175431873 C T WIPF1 Missense_Mutation p.D461N 0.42 deleterious(0) benign(0.132) TCGA-AA-A010-01 2 175711617 175711617 G A CHN1 Silent p.H206H 0.48 TCGA-AA-A010-01 2 176043878 176043878 T G ATP5G3 Missense_Mutation p.K74T 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 176046302 176046302 T C ATP5G3 Intron 0.25 TCGA-AA-A010-01 2 176794901 176794901 C A KIAA1715 Missense_Mutation p.D361Y 0.34 deleterious(0.03) benign(0.05) TCGA-AA-A010-01 2 176835496 176835496 T G KIAA1715 Missense_Mutation p.K118T 0.50 deleterious(0) benign(0.376) TCGA-AA-A010-01 2 17692010 17692010 A G RAD51AP2 3'UTR 0.55 TCGA-AA-A010-01 2 176948451 176948451 G A EVX2 Silent p.S18S 0.38 TCGA-AA-A010-01 2 17698332 17698332 C A RAD51AP2 Missense_Mutation p.V451F 0.34 deleterious(0.02) possibly_damaging(0.515) TCGA-AA-A010-01 2 176987576 176987576 G A HOXD9 Missense_Mutation p.G27D 0.40 tolerated(0.06) probably_damaging(1) TCGA-AA-A010-01 2 176995502 176995502 T G HOXD8 Missense_Mutation p.F136L 0.47 tolerated(0.09) benign(0.048) TCGA-AA-A010-01 2 176996249 176996249 T G HOXD8 Missense_Mutation p.F261C 0.35 deleterious(0) probably_damaging(0.976) TCGA-AA-A010-01 2 177054044 177054044 A G HOXD1 Missense_Mutation p.D172G 0.37 tolerated(0.3) probably_damaging(0.918) TCGA-AA-A010-01 2 178080622 178080622 G T HNRNPA3 Nonsense_Mutation p.E114* 0.36 TCGA-AA-A010-01 2 178081265 178081265 T C HNRNPA3 Silent p.C196C 0.34 TCGA-AA-A010-01 2 178326740 178326740 G T AGPS Missense_Mutation p.E330D 0.39 deleterious(0.03) probably_damaging(0.942) TCGA-AA-A010-01 2 178482796 178482796 C T TTC30A Missense_Mutation p.A212T 0.34 tolerated(0.21) benign(0.027) TCGA-AA-A010-01 2 178936346 178936346 C A PDE11A Missense_Mutation p.E273D 0.41 tolerated(0.34) probably_damaging(0.973) TCGA-AA-A010-01 2 178936600 178936600 C T PDE11A Missense_Mutation p.A189T 0.33 tolerated(0.23) possibly_damaging(0.811) TCGA-AA-A010-01 2 178985996 178985996 C A RBM45 Missense_Mutation p.P255T 0.36 tolerated(0.29) benign(0.108) TCGA-AA-A010-01 2 17899368 17899368 C T SMC6 Silent p.K356K 0.26 TCGA-AA-A010-01 2 179260239 179260239 C T OSBPL6 Nonsense_Mutation p.R945* 0.42 TCGA-AA-A010-01 2 179296845 179296845 C A PRKRA Missense_Mutation p.K307N 0.38 deleterious(0) probably_damaging(0.955) TCGA-AA-A010-01 2 179320829 179320829 G A DFNB59 Missense_Mutation p.R167Q 0.34 tolerated(1) benign(0.101) TCGA-AA-A010-01 2 179345621 179345621 A G PLEKHA3 Missense_Mutation p.T9A 0.26 deleterious(0.01) benign(0.205) TCGA-AA-A010-01 2 179393320 179393320 G T TTN Missense_Mutation p.L35720I 0.39 TCGA-AA-A010-01 2 179400234 179400234 C T TTN Missense_Mutation p.R33703Q 0.47 TCGA-AA-A010-01 2 179400321 179400321 C A TTN Missense_Mutation p.R33674I 0.41 TCGA-AA-A010-01 2 179402067 179402067 A G TTN Splice_Site p.X33289_splice 0.31 TCGA-AA-A010-01 2 179405097 179405097 G A TTN Missense_Mutation p.A32599V 0.33 TCGA-AA-A010-01 2 179410654 179410654 G A TTN Missense_Mutation p.T31770I 0.27 TCGA-AA-A010-01 2 179417634 179417634 G A TTN Missense_Mutation p.S29998L 0.32 TCGA-AA-A010-01 2 179418029 179418029 T C TTN Silent p.R29866R 0.33 TCGA-AA-A010-01 2 179418238 179418238 C A TTN Missense_Mutation p.D29832Y 0.32 TCGA-AA-A010-01 2 179421854 179421854 G A TTN Missense_Mutation p.R29343C 0.35 TCGA-AA-A010-01 2 179425064 179425064 G A TTN Missense_Mutation p.R28599C 0.38 TCGA-AA-A010-01 2 179425301 179425301 C A TTN Nonsense_Mutation p.E28520* 0.26 TCGA-AA-A010-01 2 179427607 179427607 T G TTN Missense_Mutation p.N27751T 0.38 TCGA-AA-A010-01 2 179427755 179427755 G A TTN Nonsense_Mutation p.R27702* 0.44 TCGA-AA-A010-01 2 179429180 179429180 C A TTN Nonsense_Mutation p.E27227* 0.35 TCGA-AA-A010-01 2 179430273 179430273 G A TTN Silent p.S26862S 0.25 TCGA-AA-A010-01 2 179434772 179434772 G A TTN Missense_Mutation p.R25363C 0.37 TCGA-AA-A010-01 2 179435804 179435804 T C TTN Missense_Mutation p.T25019A 0.47 TCGA-AA-A010-01 2 179436451 179436451 A C TTN Missense_Mutation p.V24803G 0.33 TCGA-AA-A010-01 2 179453388 179453388 G A TTN Missense_Mutation p.R21022C 0.31 TCGA-AA-A010-01 2 179457718 179457718 T C TTN Missense_Mutation p.S19710G 0.35 TCGA-AA-A010-01 2 179466483 179466483 A C TTN Missense_Mutation p.I18445S 0.46 TCGA-AA-A010-01 2 179477096 179477096 G T TTN Missense_Mutation p.S16719Y 0.41 TCGA-AA-A010-01 2 179486022 179486022 G A TTN Silent p.C15141C 0.44 TCGA-AA-A010-01 2 179507021 179507021 G A TTN Missense_Mutation p.R13501C 0.33 TCGA-AA-A010-01 2 179542381 179542381 C A TTN Nonsense_Mutation p.E11420* 0.40 TCGA-AA-A010-01 2 179542408 179542408 A C TTN Missense_Mutation p.F11411V 0.23 TCGA-AA-A010-01 2 179542486 179542486 G A TTN Silent p.L11385L 0.45 TCGA-AA-A010-01 2 17954545 17954545 A G GEN1 Silent p.R350R 0.38 TCGA-AA-A010-01 2 179578745 179578745 G T TTN Missense_Mutation p.F8880L 0.46 TCGA-AA-A010-01 2 179582848 179582848 A C TTN Missense_Mutation p.I8295M 0.29 TCGA-AA-A010-01 2 179583913 179583913 G A TTN Silent p.C8068C 0.41 TCGA-AA-A010-01 2 179585141 179585141 T C TTN Missense_Mutation p.D7783G 0.38 TCGA-AA-A010-01 2 179585761 179585761 G T TTN Missense_Mutation p.S7662Y 0.23 TCGA-AA-A010-01 2 179585899 179585899 G A TTN Missense_Mutation p.A7616V 0.37 TCGA-AA-A010-01 2 179589143 179589143 G T TTN Missense_Mutation p.L6987M 0.44 TCGA-AA-A010-01 2 179590588 179590588 G T TTN Missense_Mutation p.L6821I 0.37 TCGA-AA-A010-01 2 179595362 179595362 T G TTN Missense_Mutation p.K5966N 0.30 TCGA-AA-A010-01 2 179595718 179595718 C A TTN Nonsense_Mutation p.E5892* 0.39 TCGA-AA-A010-01 2 179596646 179596646 G A TTN Silent p.Y5652Y 0.35 TCGA-AA-A010-01 2 179596658 179596658 G T TTN Silent p.V5648V 0.34 TCGA-AA-A010-01 2 179599471 179599471 G A TTN Silent p.V5060V 0.40 TCGA-AA-A010-01 2 179613495 179613495 G A TTN Intron 0.24 TCGA-AA-A010-01 2 179615272 179615272 G T TTN Intron 0.38 TCGA-AA-A010-01 2 179616764 179616764 A C TTN Intron 0.23 TCGA-AA-A010-01 2 179621225 179621225 G A TTN Missense_Mutation p.P3660S 0.27 TCGA-AA-A010-01 2 179643789 179643789 G T TTN Missense_Mutation p.D1340E 0.48 TCGA-AA-A010-01 2 179647100 179647100 T A TTN Missense_Mutation p.Q1073H 0.27 TCGA-AA-A010-01 2 179659916 179659916 G T TTN Silent p.L326L 0.39 TCGA-AA-A010-01 2 179702098 179702098 A C CCDC141 Missense_Mutation p.F1283C 0.33 tolerated(0.17) probably_damaging(0.917) TCGA-AA-A010-01 2 179702150 179702150 G T CCDC141 Missense_Mutation p.L1266I 0.55 tolerated(0.09) benign(0.045) TCGA-AA-A010-01 2 179736952 179736952 G T CCDC141 Missense_Mutation p.L663I 0.37 deleterious(0.03) probably_damaging(0.996) TCGA-AA-A010-01 2 180809949 180809949 T C CWC22 Silent p.R878R 0.32 TCGA-AA-A010-01 2 180838374 180838374 C T CWC22 Missense_Mutation p.R246Q 0.33 deleterious(0.02) possibly_damaging(0.701) TCGA-AA-A010-01 2 18113665 18113665 G A KCNS3 Missense_Mutation p.D464N 0.30 tolerated(0.72) benign(0.001) TCGA-AA-A010-01 2 182387013 182387013 C T ITGA4 Missense_Mutation p.T673M 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 2 182396419 182396419 C A ITGA4 Missense_Mutation p.F900L 0.20 tolerated(0.62) benign(0.009) TCGA-AA-A010-01 2 182780761 182780761 G A SSFA2 Silent p.S798S 0.37 TCGA-AA-A010-01 2 182981984 182981984 G T PPP1R1C Nonsense_Mutation p.E105* 0.36 TCGA-AA-A010-01 2 183604908 183604908 T G DNAJC10 Intron 0.35 TCGA-AA-A010-01 2 183850947 183850947 T G NCKAP1 Missense_Mutation p.K325T 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 1843074 1843074 G A MYT1L Missense_Mutation p.S974F 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 185801567 185801567 G T ZNF804A Missense_Mutation p.D482Y 0.36 tolerated(0.94) possibly_damaging(0.819) TCGA-AA-A010-01 2 186671136 186671136 G A FSIP2 Silent p.S5790S 0.40 TCGA-AA-A010-01 2 186672046 186672046 A G FSIP2 Missense_Mutation p.T6094A 0.33 probably_damaging(0.998) TCGA-AA-A010-01 2 186672920 186672920 C T FSIP2 Missense_Mutation p.S6385F 0.51 probably_damaging(0.948) TCGA-AA-A010-01 2 186673366 186673366 G T FSIP2 Missense_Mutation p.D6534Y 0.43 possibly_damaging(0.616) TCGA-AA-A010-01 2 186673417 186673417 G T FSIP2 Missense_Mutation p.V6551F 0.32 benign(0.041) TCGA-AA-A010-01 2 187360039 187360039 T G ZC3H15 Missense_Mutation p.F52C 0.38 tolerated(0.14) possibly_damaging(0.662) TCGA-AA-A010-01 2 18736367 18736367 C A RDH14 3'UTR 0.46 TCGA-AA-A010-01 2 18736864 18736864 A C RDH14 Missense_Mutation p.F202V 0.38 deleterious(0) possibly_damaging(0.836) TCGA-AA-A010-01 2 187542045 187542045 C A ITGAV 3'UTR 0.39 TCGA-AA-A010-01 2 18758122 18758122 T C NT5C1B Missense_Mutation p.D414G 0.29 deleterious(0) benign(0.063) TCGA-AA-A010-01 2 188331553 188331553 A T TFPI 3'UTR 0.50 TCGA-AA-A010-01 2 189858184 189858184 C A COL3A1 Missense_Mutation p.P383H 0.38 unknown(0) TCGA-AA-A010-01 2 189909954 189909954 G T COL5A2 Missense_Mutation p.S1105Y 0.29 unknown(0) TCGA-AA-A010-01 2 189915323 189915323 C A COL5A2 Missense_Mutation p.R1004I 0.29 unknown(0) TCGA-AA-A010-01 2 189928718 189928718 T G COL5A2 Missense_Mutation p.K586N 0.38 possibly_damaging(0.891) TCGA-AA-A010-01 2 189943795 189943795 A G COL5A2 Silent p.G333G 0.50 TCGA-AA-A010-01 2 190316534 190316534 T G WDR75 Missense_Mutation p.F96V 0.34 deleterious(0) benign(0.367) TCGA-AA-A010-01 2 190316589 190316589 C T WDR75 Missense_Mutation p.S114F 0.35 tolerated(0.09) benign(0.008) TCGA-AA-A010-01 2 190428742 190428742 A C SLC40A1 Missense_Mutation p.F324V 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 190708798 190708798 G T PMS1 Nonsense_Mutation p.E231* 0.32 TCGA-AA-A010-01 2 190924865 190924865 C A MSTN Missense_Mutation p.G224C 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 2 191064607 191064607 G T C2orf88 Missense_Mutation p.K7N 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 191067809 191067809 G T C2orf88 3'UTR 0.35 TCGA-AA-A010-01 2 191235775 191235775 C T INPP1 Missense_Mutation p.R283C 0.34 tolerated(0.1) possibly_damaging(0.5) TCGA-AA-A010-01 2 191301949 191301949 C T MFSD6 Silent p.N398N 0.44 TCGA-AA-A010-01 2 191373819 191373819 C T TMEM194B 3'UTR 0.50 TCGA-AA-A010-01 2 191375141 191375141 C T TMEM194B Missense_Mutation p.R359Q 0.31 deleterious(0.04) possibly_damaging(0.787) TCGA-AA-A010-01 2 191555128 191555128 A C NAB1 3'UTR 0.28 TCGA-AA-A010-01 2 191872299 191872299 C A STAT1 Missense_Mutation p.R121I 0.21 tolerated(0.2) benign(0.004) TCGA-AA-A010-01 2 191937899 191937899 G T STAT4 Silent p.S130S 0.31 TCGA-AA-A010-01 2 196544789 196544789 A C SLC39A10 Missense_Mutation p.K8T 0.42 deleterious(0) possibly_damaging(0.722) TCGA-AA-A010-01 2 196640693 196640693 G A DNAH7 Silent p.I3693I 0.36 TCGA-AA-A010-01 2 196825397 196825397 T G DNAH7 Missense_Mutation p.K826N 0.41 tolerated(0.61) benign(0.024) TCGA-AA-A010-01 2 196837079 196837079 C A DNAH7 Missense_Mutation p.D649Y 0.34 deleterious(0) possibly_damaging(0.832) TCGA-AA-A010-01 2 196877605 196877605 C A DNAH7 Nonsense_Mutation p.E299* 0.24 TCGA-AA-A010-01 2 196913017 196913017 T C DNAH7 Intron 0.49 TCGA-AA-A010-01 2 197065914 197065914 C A HECW2 3'UTR 0.36 TCGA-AA-A010-01 2 197105275 197105275 C T HECW2 Missense_Mutation p.R1221Q 0.25 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 2 197122572 197122572 C T HECW2 Missense_Mutation p.D1132N 0.43 deleterious(0.03) benign(0.114) TCGA-AA-A010-01 2 197184423 197184423 C A HECW2 Missense_Mutation p.E397D 0.44 tolerated_low_confidence(0.3) benign(0.001) TCGA-AA-A010-01 2 197184564 197184564 G A HECW2 Silent p.S350S 0.38 TCGA-AA-A010-01 2 197631422 197631422 C T GTF3C3 Missense_Mutation p.R802Q 0.38 tolerated(0.34) benign(0.013) TCGA-AA-A010-01 2 197761892 197761892 C T PGAP1 Missense_Mutation p.R297Q 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 197986251 197986251 G T ANKRD44 Silent p.V237V 0.34 TCGA-AA-A010-01 2 198257138 198257138 A C SF3B1 Missense_Mutation p.I1268M 0.39 deleterious(0.03) benign(0.245) TCGA-AA-A010-01 2 198283625 198283625 C T SF3B1 Intron 0.34 TCGA-AA-A010-01 2 198284998 198284998 C A SF3B1 Intron 0.30 TCGA-AA-A010-01 2 198400345 198400345 A G HSPE1-MOB4 Missense_Mutation p.E108G 0.37 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 2 198498520 198498520 C A RFTN2 Nonsense_Mutation p.E214* 0.32 TCGA-AA-A010-01 2 198511352 198511352 G A RFTN2 Silent p.L60L 0.25 TCGA-AA-A010-01 2 200246483 200246483 T C SATB2 Missense_Mutation p.D136G 0.28 deleterious(0.02) possibly_damaging(0.597) TCGA-AA-A010-01 2 200790473 200790473 G T C2orf69 Missense_Mutation p.R341I 0.49 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 201371606 201371606 C T KCTD18 Missense_Mutation p.R45H 0.37 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 2 201436936 201436936 A C SGOL2 Missense_Mutation p.I623L 0.45 tolerated(0.05) probably_damaging(0.95) TCGA-AA-A010-01 2 20151184 20151184 T G WDR35 Missense_Mutation p.T499P 0.39 tolerated(0.11) benign(0.045) TCGA-AA-A010-01 2 201726121 201726121 C A CLK1 Missense_Mutation p.R119I 0.39 deleterious(0.02) possibly_damaging(0.617) TCGA-AA-A010-01 2 201950242 201950242 C A NDUFB3 Missense_Mutation p.F67L 0.38 tolerated(1) benign(0.001) TCGA-AA-A010-01 2 202093677 202093677 G T CASP10 Missense_Mutation p.K479N 0.36 tolerated(0.19) benign(0.004) TCGA-AA-A010-01 2 202153494 202153494 T G ALS2CR12 Missense_Mutation p.I408L 0.40 tolerated(0.15) benign(0) TCGA-AA-A010-01 2 202254068 202254068 T C TRAK2 Missense_Mutation p.D451G 0.41 tolerated(0.71) benign(0) TCGA-AA-A010-01 2 202400900 202400900 G A ALS2CR11 Silent p.N450N 0.40 TCGA-AA-A010-01 2 202512533 202512533 G A MPP4 Nonsense_Mutation p.R534* 0.43 TCGA-AA-A010-01 2 20251327 20251327 C A LAPTM4A 5'UTR 0.41 TCGA-AA-A010-01 2 202545573 202545573 T C MPP4 Missense_Mutation p.H306R 0.38 deleterious(0.01) benign(0.09) TCGA-AA-A010-01 2 202574759 202574759 G T ALS2 Silent p.A1375A 0.29 TCGA-AA-A010-01 2 202588059 202588059 T G ALS2 Missense_Mutation p.K1206N 0.40 tolerated(0.1) possibly_damaging(0.855) TCGA-AA-A010-01 2 202633659 202633659 C T ALS2 5'UTR 0.41 TCGA-AA-A010-01 2 202900629 202900629 C T FZD7 Missense_Mutation p.A420V 0.33 tolerated(0.28) benign(0.305) TCGA-AA-A010-01 2 203162130 203162130 T G NOP58 Missense_Mutation p.V367G 0.34 deleterious(0) benign(0.102) TCGA-AA-A010-01 2 203424703 203424703 T G BMPR2 3'UTR 0.39 TCGA-AA-A010-01 2 203621961 203621961 G A FAM117B Missense_Mutation p.R377H 0.34 deleterious(0) possibly_damaging(0.884) TCGA-AA-A010-01 2 203906491 203906491 G T NBEAL1 Missense_Mutation p.D19Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 203995127 203995127 A G NBEAL1 Silent p.G1135G 0.33 TCGA-AA-A010-01 2 20402397 20402397 G T SDC1 3'UTR 0.28 TCGA-AA-A010-01 2 204037521 204037521 C A NBEAL1 Missense_Mutation p.L2061I 0.48 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 204073933 204073933 C T NBEAL1 Missense_Mutation p.T2529I 0.34 deleterious(0) possibly_damaging(0.71) TCGA-AA-A010-01 2 204073957 204073957 C A NBEAL1 Missense_Mutation p.S2537Y 0.34 tolerated(0.09) possibly_damaging(0.841) TCGA-AA-A010-01 2 204305442 204305442 A G RAPH1 Missense_Mutation p.I824T 0.38 benign(0.152) TCGA-AA-A010-01 2 204820490 204820490 G A ICOS Missense_Mutation p.D64N 0.39 tolerated(0.11) benign(0.006) TCGA-AA-A010-01 2 20648056 20648056 G A RHOB 3'UTR 0.34 TCGA-AA-A010-01 2 206547961 206547961 G T NRP2 5'UTR 0.37 TCGA-AA-A010-01 2 207171021 207171021 A G ZDBF2 Missense_Mutation p.E590G 0.28 deleterious(0) possibly_damaging(0.775) TCGA-AA-A010-01 2 207171449 207171449 G T ZDBF2 Nonsense_Mutation p.E733* 0.43 TCGA-AA-A010-01 2 207171714 207171714 G T ZDBF2 Missense_Mutation p.S821I 0.29 tolerated(0.05) possibly_damaging(0.775) TCGA-AA-A010-01 2 207174190 207174190 A C ZDBF2 Missense_Mutation p.K1646N 0.37 tolerated(0.29) benign(0.403) TCGA-AA-A010-01 2 207174435 207174435 A C ZDBF2 Missense_Mutation p.K1728T 0.29 tolerated(0.1) benign(0.403) TCGA-AA-A010-01 2 207174576 207174576 A G ZDBF2 Missense_Mutation p.K1775R 0.36 tolerated(0.27) benign(0.292) TCGA-AA-A010-01 2 207530722 207530722 C T DYTN Missense_Mutation p.D338N 0.39 deleterious(0.05) benign(0.014) TCGA-AA-A010-01 2 207564912 207564912 G A DYTN Missense_Mutation p.A171V 0.39 tolerated(0.42) benign(0.124) TCGA-AA-A010-01 2 207604327 207604327 C A MDH1B Missense_Mutation p.E506D 0.40 tolerated_low_confidence(0.21) benign(0.005) TCGA-AA-A010-01 2 207632019 207632019 G A FASTKD2 Missense_Mutation p.R201H 0.33 tolerated(0.11) benign(0.021) TCGA-AA-A010-01 2 207651596 207651596 G T FASTKD2 Missense_Mutation p.D523Y 0.35 deleterious(0) probably_damaging(0.975) TCGA-AA-A010-01 2 20870280 20870280 G A GDF7 Missense_Mutation p.D150N 0.37 deleterious(0.04) benign(0.011) TCGA-AA-A010-01 2 209045992 209045992 G A C2orf80 Missense_Mutation p.R82C 0.40 deleterious(0) possibly_damaging(0.857) TCGA-AA-A010-01 2 209103914 209103914 C T IDH1 Silent p.K345K 0.34 TCGA-AA-A010-01 2 209150642 209150642 A C PIKFYVE Missense_Mutation p.D269A 0.49 deleterious(0.01) possibly_damaging(0.611) TCGA-AA-A010-01 2 209179149 209179149 T C PIKFYVE Splice_Site p.X609_splice 0.29 TCGA-AA-A010-01 2 209190652 209190652 G T PIKFYVE Missense_Mutation p.K1039N 0.39 tolerated(0.1) benign(0.235) TCGA-AA-A010-01 2 209219304 209219304 G A PIKFYVE Missense_Mutation p.R2039Q 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 210558716 210558716 A G MAP2 Missense_Mutation p.T608A 0.48 tolerated_low_confidence(0.34) benign(0.019) TCGA-AA-A010-01 2 210559086 210559086 T G MAP2 Missense_Mutation p.I731S 0.32 tolerated(0.08) probably_damaging(1) TCGA-AA-A010-01 2 210559274 210559274 G T MAP2 Missense_Mutation p.D794Y 0.32 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 2 210678386 210678386 C T UNC80 Missense_Mutation p.P341S 0.34 benign(0.303) TCGA-AA-A010-01 2 210856927 210856927 C A UNC80 Missense_Mutation p.L3052I 0.25 benign(0.203) TCGA-AA-A010-01 2 211300171 211300171 A C LANCL1 Missense_Mutation p.C355G 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 211341094 211341094 A C LANCL1 Silent p.P9P 0.40 TCGA-AA-A010-01 2 211441192 211441192 A G CPS1 Missense_Mutation p.Y126C 0.50 deleterious(0.05) possibly_damaging(0.575) TCGA-AA-A010-01 2 21225496 21225496 G T APOB Silent p.I4266I 0.31 TCGA-AA-A010-01 2 21228636 21228636 G T APOB Missense_Mutation p.L3702I 0.44 possibly_damaging(0.764) TCGA-AA-A010-01 2 212293206 212293206 C T ERBB4 Missense_Mutation p.M882I 0.17 deleterious(0.05) benign(0.035) TCGA-AA-A010-01 2 21230263 21230263 C A APOB Missense_Mutation p.K3159N 0.39 probably_damaging(0.999) TCGA-AA-A010-01 2 21230394 21230394 C A APOB Nonsense_Mutation p.G3116* 0.31 TCGA-AA-A010-01 2 21232770 21232770 G T APOB Missense_Mutation p.L2324I 0.33 benign(0.018) TCGA-AA-A010-01 2 21235259 21235259 G A APOB Missense_Mutation p.S1494L 0.30 benign(0.006) TCGA-AA-A010-01 2 21250902 21250902 G T APOB Missense_Mutation p.S622Y 0.37 probably_damaging(0.996) TCGA-AA-A010-01 2 21265342 21265342 G A APOB Missense_Mutation p.A43V 0.39 benign(0.06) TCGA-AA-A010-01 2 214149375 214149375 G A SPAG16 Intron 0.38 TCGA-AA-A010-01 2 214228894 214228894 C T SPAG16 Intron 0.37 TCGA-AA-A010-01 2 215013920 215013920 G A SPAG16 Silent p.R550R 0.37 TCGA-AA-A010-01 2 215275017 215275017 G A SPAG16 Missense_Mutation p.G625D 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 2 215275117 215275117 A T SPAG16 3'UTR 0.38 TCGA-AA-A010-01 2 215797436 215797436 C T ABCA12 Silent p.K2570K 0.25 TCGA-AA-A010-01 2 215821483 215821483 A G ABCA12 Missense_Mutation p.V2046A 0.35 deleterious(0.02) probably_damaging(0.968) TCGA-AA-A010-01 2 215865528 215865528 C A ABCA12 Missense_Mutation p.S1027I 0.32 deleterious(0) probably_damaging(0.94) TCGA-AA-A010-01 2 215910714 215910714 T G ABCA12 Missense_Mutation p.K240T 0.24 tolerated(0.58) benign(0.034) TCGA-AA-A010-01 2 216236748 216236748 C A FN1 Missense_Mutation p.A2200S 0.35 tolerated(0.72) benign(0.287) TCGA-AA-A010-01 2 216272037 216272037 T G FN1 Missense_Mutation p.R842S 0.42 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 2 216289027 216289027 C T FN1 Missense_Mutation p.G353D 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 217055003 217055003 G A XRCC5 Silent p.P630P 0.31 TCGA-AA-A010-01 2 217142456 217142456 G A MARCH4 Silent p.R268R 0.41 TCGA-AA-A010-01 2 217280041 217280041 C A SMARCAL1 Missense_Mutation p.S205Y 0.36 deleterious(0.01) possibly_damaging(0.646) TCGA-AA-A010-01 2 217341882 217341882 C T SMARCAL1 Silent p.S826S 0.41 TCGA-AA-A010-01 2 218750475 218750475 C A TNS1 Missense_Mutation p.D245Y 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 218925470 218925470 C T CXCR2P1 RNA 0.38 TCGA-AA-A010-01 2 218939912 218939912 C T RUFY4 Silent p.L253L 0.37 TCGA-AA-A010-01 2 218939998 218939998 C T RUFY4 Silent p.Y281Y 0.40 TCGA-AA-A010-01 2 219103422 219103422 C A ARPC2 Missense_Mutation p.L102I 0.38 tolerated(0.27) benign(0.045) TCGA-AA-A010-01 2 219137532 219137532 T C PNKD Intron 0.44 TCGA-AA-A010-01 2 219259477 219259477 C T SLC11A1 Missense_Mutation p.A504V 0.45 tolerated(0.18) benign(0.22) TCGA-AA-A010-01 2 219313964 219313964 G T VIL1 Missense_Mutation p.D797Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 2 219507517 219507517 G A ZNF142 Missense_Mutation p.S1241L 0.35 deleterious(0) possibly_damaging(0.651) TCGA-AA-A010-01 2 219507884 219507884 G T ZNF142 Missense_Mutation p.L1119M 0.35 tolerated(0.45) possibly_damaging(0.665) TCGA-AA-A010-01 2 219677131 219677131 C A CYP27A1 Nonsense_Mutation p.Y211* 0.39 TCGA-AA-A010-01 2 219689025 219689025 T C PRKAG3 Missense_Mutation p.T425A 0.33 tolerated(0.14) benign(0.088) TCGA-AA-A010-01 2 219692025 219692025 C T PRKAG3 Missense_Mutation p.G316D 0.36 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 2 219869159 219869159 C A CCDC108 Missense_Mutation p.K1690N 0.35 tolerated(0.09) possibly_damaging(0.617) TCGA-AA-A010-01 2 219895497 219895497 C T CCDC108 Missense_Mutation p.E359K 0.39 tolerated(0.63) benign(0.091) TCGA-AA-A010-01 2 219903720 219903720 C A CCDC108 Missense_Mutation p.E17D 0.40 tolerated_low_confidence(0.24) benign(0.107) TCGA-AA-A010-01 2 220037760 220037760 A G CNPPD1 Missense_Mutation p.C261R 0.34 tolerated(0.6) benign(0.004) TCGA-AA-A010-01 2 220078605 220078605 G A ABCB6 Silent p.L507L 0.45 TCGA-AA-A010-01 2 220088944 220088944 G A ATG9A Silent p.F383F 0.40 TCGA-AA-A010-01 2 220104381 220104381 G T GLB1L Silent p.G268G 0.38 TCGA-AA-A010-01 2 220135997 220135997 G A TUBA4B RNA 0.41 TCGA-AA-A010-01 2 220161475 220161475 G T PTPRN Missense_Mutation p.P769H 0.29 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 2 220312931 220312931 G A SPEG Missense_Mutation p.E351K 0.31 benign(0.033) TCGA-AA-A010-01 2 220333893 220333893 G T SPEG Missense_Mutation p.K1169N 0.37 probably_damaging(0.997) TCGA-AA-A010-01 2 220337729 220337729 T C SPEG Missense_Mutation p.V1353A 0.32 benign(0.001) TCGA-AA-A010-01 2 220355213 220355213 G A SPEG Missense_Mutation p.E3002K 0.35 probably_damaging(0.998) TCGA-AA-A010-01 2 220368898 220368898 C T GMPPA Missense_Mutation p.R195W 0.41 deleterious(0.01) possibly_damaging(0.72) TCGA-AA-A010-01 2 220413933 220413933 C T TMEM198 Missense_Mutation p.R268C 0.40 deleterious(0) possibly_damaging(0.689) TCGA-AA-A010-01 2 220414051 220414051 G A TMEM198 Missense_Mutation p.R307H 0.37 deleterious(0) possibly_damaging(0.522) TCGA-AA-A010-01 2 220422293 220422293 G A OBSL1 Missense_Mutation p.R1280W 0.43 tolerated(0.12) probably_damaging(0.982) TCGA-AA-A010-01 2 220440019 220440019 G A INHA Missense_Mutation p.C291Y 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 220506483 220506483 G T SLC4A3 3'UTR 0.39 TCGA-AA-A010-01 2 220506554 220506554 G T SLC4A3 3'UTR 0.54 TCGA-AA-A010-01 2 223096870 223096870 C A PAX3 Missense_Mutation p.R240I 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 2 223161894 223161894 C T PAX3 Missense_Mutation p.G42S 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 223169314 223169314 C A CCDC140 3'UTR 0.42 TCGA-AA-A010-01 2 223169894 223169894 T G CCDC140 3'UTR 0.34 TCGA-AA-A010-01 2 223773854 223773854 A C ACSL3 Missense_Mutation p.K122Q 0.41 deleterious(0) possibly_damaging(0.77) TCGA-AA-A010-01 2 223787802 223787802 A C ACSL3 Missense_Mutation p.K363Q 0.43 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 2 223919539 223919539 T C KCNE4 3'UTR 0.35 TCGA-AA-A010-01 2 225338878 225338878 G A CUL3 3'UTR 0.39 TCGA-AA-A010-01 2 225449682 225449682 C A CUL3 Missense_Mutation p.K15N 0.39 tolerated(0.21) benign(0.037) TCGA-AA-A010-01 2 225630357 225630357 T G DOCK10 3'UTR 0.32 TCGA-AA-A010-01 2 225630380 225630380 G A DOCK10 3'UTR 0.34 TCGA-AA-A010-01 2 225670950 225670950 G T DOCK10 Missense_Mutation p.S1236Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 2 225706558 225706558 G T DOCK10 Missense_Mutation p.S875Y 0.41 deleterious(0.01) probably_damaging(0.979) TCGA-AA-A010-01 2 226446981 226446981 C T NYAP2 Missense_Mutation p.A283V 0.38 tolerated(0.09) benign(0.038) TCGA-AA-A010-01 2 226447108 226447108 C A NYAP2 Silent p.P325P 0.35 TCGA-AA-A010-01 2 227661272 227661272 C T IRS1 Missense_Mutation p.C728Y 0.31 deleterious(0.02) possibly_damaging(0.896) TCGA-AA-A010-01 2 227662786 227662786 G A IRS1 Silent p.I223I 0.26 TCGA-AA-A010-01 2 227958979 227958979 C A COL4A4 Nonsense_Mutation p.G411* 0.38 TCGA-AA-A010-01 2 228205062 228205062 C T MFF Missense_Mutation p.R162C 0.44 tolerated(0.06) benign(0.274) TCGA-AA-A010-01 2 228212096 228212096 C T MFF Missense_Mutation p.R250C 0.33 deleterious(0.03) probably_damaging(0.932) TCGA-AA-A010-01 2 228243890 228243890 A G TM4SF20 Missense_Mutation p.V32A 0.44 tolerated(0.45) benign(0.335) TCGA-AA-A010-01 2 228389494 228389494 G A AGFG1 Missense_Mutation p.R186H 0.30 tolerated(0.08) probably_damaging(0.915) TCGA-AA-A010-01 2 228783505 228783505 G T DAW1 Missense_Mutation p.R328I 0.35 deleterious(0.03) benign(0.158) TCGA-AA-A010-01 2 228883466 228883466 G A SPHKAP Silent p.L702L 0.32 TCGA-AA-A010-01 2 229890417 229890417 G A PID1 Silent p.S226S 0.28 TCGA-AA-A010-01 2 229890561 229890561 G A PID1 Silent p.F178F 0.34 TCGA-AA-A010-01 2 230664073 230664073 T G TRIP12 Missense_Mutation p.K1003T 0.34 deleterious(0) possibly_damaging(0.628) TCGA-AA-A010-01 2 230902224 230902224 T G SLC16A14 Missense_Mutation p.K469Q 0.25 tolerated(0.08) probably_damaging(0.932) TCGA-AA-A010-01 2 231101894 231101894 G T SP140 Missense_Mutation p.E52D 0.27 tolerated(0.1) benign(0.333) TCGA-AA-A010-01 2 231174696 231174696 G A SP140 Missense_Mutation p.D706N 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 2 231367802 231367802 C A SP100 Missense_Mutation p.P581H 0.44 deleterious(0) probably_damaging(0.917) TCGA-AA-A010-01 2 231931824 231931824 C T PSMD1 Missense_Mutation p.S170L 0.38 deleterious(0) benign(0.371) TCGA-AA-A010-01 2 232323764 232323764 G A NCL Silent p.V371V 0.34 TCGA-AA-A010-01 2 233128132 233128132 C T DIS3L2 Silent p.G547G 0.32 TCGA-AA-A010-01 2 233199432 233199432 G A DIS3L2 Missense_Mutation p.R794H 0.34 deleterious(0) probably_damaging(0.939) TCGA-AA-A010-01 2 233321292 233321292 T A ALPI Missense_Mutation p.L63M 0.29 tolerated(1) benign(0.005) TCGA-AA-A010-01 2 233414723 233414723 C T TIGD1 5'UTR 0.31 TCGA-AA-A010-01 2 233613721 233613721 G T GIGYF2 Nonsense_Mutation p.E66* 0.35 TCGA-AA-A010-01 2 233625283 233625283 C T GIGYF2 Missense_Mutation p.S158L 0.34 probably_damaging(0.992) TCGA-AA-A010-01 2 233633036 233633036 C T KCNJ13 Silent p.E316E 0.32 TCGA-AA-A010-01 2 233899234 233899234 C T NEU2 Missense_Mutation p.R204C 0.43 deleterious(0.05) benign(0.001) TCGA-AA-A010-01 2 234198998 234198998 C T ATG16L1 Nonsense_Mutation p.R477* 0.38 TCGA-AA-A010-01 2 234394438 234394438 A G USP40 Missense_Mutation p.F1139S 0.35 tolerated(0.09) possibly_damaging(0.908) TCGA-AA-A010-01 2 234420362 234420362 G A USP40 Missense_Mutation p.S851L 0.38 deleterious(0.01) possibly_damaging(0.477) TCGA-AA-A010-01 2 234526854 234526854 C A UGT1A8 Silent p.V167V 0.41 TCGA-AA-A010-01 2 234545534 234545534 G A UGT1A10 Silent p.S122S 0.34 TCGA-AA-A010-01 2 234580888 234580888 G A UGT1A9 Missense_Mutation p.R103Q 0.37 tolerated(0.59) benign(0.001) TCGA-AA-A010-01 2 234591044 234591044 G A UGT1A7 Missense_Mutation p.G154D 0.25 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 2 234622135 234622135 G A UGT1A5 Silent p.S166S 0.33 TCGA-AA-A010-01 2 234652376 234652376 C T UGT1A10 Intron 0.35 TCGA-AA-A010-01 2 234862567 234862567 G T TRPM8 Nonsense_Mutation p.E383* 0.34 TCGA-AA-A010-01 2 237405897 237405897 C T IQCA1 Missense_Mutation p.R82H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 238283237 238283237 C A COL6A3 Missense_Mutation p.G1166V 0.32 probably_damaging(0.999) TCGA-AA-A010-01 2 238287309 238287309 C A COL6A3 Missense_Mutation p.G823C 0.33 probably_damaging(0.971) TCGA-AA-A010-01 2 238287798 238287798 C T COL6A3 Missense_Mutation p.D660N 0.30 probably_damaging(1) TCGA-AA-A010-01 2 238449010 238449010 G A MLPH Missense_Mutation p.R375H 0.43 tolerated(0.93) benign(0) TCGA-AA-A010-01 2 238455287 238455287 A G MLPH Silent p.R526R 0.36 TCGA-AA-A010-01 2 238662108 238662108 G A LRRFIP1 Missense_Mutation p.E214K 0.36 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 2 238726815 238726815 T C RBM44 Missense_Mutation p.V419A 0.39 tolerated(0.32) benign(0.027) TCGA-AA-A010-01 2 238999993 238999993 C T SCLY Intron 0.38 TCGA-AA-A010-01 2 238999999 238999999 C A SCLY Intron 0.40 TCGA-AA-A010-01 2 239038991 239038991 G A ESPNL Missense_Mutation p.V546I 0.45 deleterious(0) possibly_damaging(0.688) TCGA-AA-A010-01 2 239179990 239179990 C T PER2 Silent p.P245P 0.32 TCGA-AA-A010-01 2 239253146 239253146 G T TRAF3IP1 Nonsense_Mutation p.E390* 0.37 TCGA-AA-A010-01 2 240944651 240944651 C T NDUFA10 Missense_Mutation p.R289H 0.40 tolerated(0.57) benign(0.022) TCGA-AA-A010-01 2 240969005 240969005 A G OR6B2 Missense_Mutation p.V281A 0.39 deleterious(0.04) benign(0.392) TCGA-AA-A010-01 2 240985214 240985214 G T OR6B3 Silent p.I92I 0.34 TCGA-AA-A010-01 2 24108602 24108602 C A ATAD2B Nonsense_Mutation p.E224* 0.39 TCGA-AA-A010-01 2 241401975 241401975 C T GPC1 Silent p.S231S 0.26 TCGA-AA-A010-01 2 241689888 241689888 C T KIF1A Missense_Mutation p.E979K 0.40 deleterious(0.04) probably_damaging(0.99) TCGA-AA-A010-01 2 241898714 241898714 G A AC104809.3 Intron 0.25 TCGA-AA-A010-01 2 241979538 241979538 C T SNED1 Silent p.C364C 0.07 TCGA-AA-A010-01 2 242054302 242054302 C A PASK Intron 0.51 TCGA-AA-A010-01 2 242079358 242079358 G A PASK Missense_Mutation p.A181V 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 242097941 242097941 T G PPP1R7 Missense_Mutation p.F94V 0.08 deleterious(0.02) benign(0.206) TCGA-AA-A010-01 2 242135437 242135437 T C ANO7 Intron 0.42 TCGA-AA-A010-01 2 242139552 242139552 C T ANO7 Silent p.L210L 0.29 TCGA-AA-A010-01 2 242179456 242179456 G A HDLBP Missense_Mutation p.R751C 0.42 deleterious(0) probably_damaging(0.93) TCGA-AA-A010-01 2 242380893 242380893 C T FARP2 Missense_Mutation p.R445C 0.46 deleterious(0.04) benign(0.146) TCGA-AA-A010-01 2 242441100 242441100 C T STK25 Silent p.E18E 0.35 TCGA-AA-A010-01 2 242572579 242572579 G T THAP4 Silent p.V331V 0.33 TCGA-AA-A010-01 2 242793223 242793223 G T PDCD1 Missense_Mutation p.S285Y 0.38 deleterious(0) possibly_damaging(0.726) TCGA-AA-A010-01 2 242814002 242814002 G A CXXC11 Missense_Mutation p.A99T 0.36 tolerated(0.74) benign(0.024) TCGA-AA-A010-01 2 24360811 24360811 C A FAM228B Missense_Mutation p.F67L 0.38 deleterious(0.04) benign(0.2) TCGA-AA-A010-01 2 24533544 24533544 T C ITSN2 Missense_Mutation p.N124D 0.34 tolerated(0.14) probably_damaging(0.985) TCGA-AA-A010-01 2 24930100 24930100 G T NCOA1 Missense_Mutation p.E587D 0.36 tolerated(0.5) probably_damaging(0.99) TCGA-AA-A010-01 2 25190147 25190147 G A DNAJC27 Nonsense_Mutation p.R35* 0.37 TCGA-AA-A010-01 2 26203929 26203929 C T KIF3C Silent p.R286R 0.38 TCGA-AA-A010-01 2 26358032 26358032 C A RAB10 3'UTR 0.50 TCGA-AA-A010-01 2 26420587 26420587 G A HADHA Silent p.I484I 0.37 TCGA-AA-A010-01 2 26437359 26437359 G A HADHA Nonsense_Mutation p.R291* 0.37 TCGA-AA-A010-01 2 26505909 26505909 C A HADHB Missense_Mutation p.L351I 0.33 deleterious(0) probably_damaging(0.936) TCGA-AA-A010-01 2 26699852 26699852 G T OTOF Silent p.A861A 0.36 TCGA-AA-A010-01 2 26706379 26706379 T C OTOF Missense_Mutation p.N448S 0.41 tolerated(0.56) benign(0.432) TCGA-AA-A010-01 2 26781517 26781517 C A OTOF 5'UTR 0.37 TCGA-AA-A010-01 2 26802307 26802307 G T C2orf70 3'UTR 0.35 TCGA-AA-A010-01 2 27015630 27015630 G T CENPA Nonsense_Mutation p.E73* 0.43 TCGA-AA-A010-01 2 27156164 27156164 C A DPYSL5 Silent p.I251I 0.38 TCGA-AA-A010-01 2 271878 271878 G A ACP1 Missense_Mutation p.R19Q 0.28 tolerated(0.06) benign(0.329) TCGA-AA-A010-01 2 27303652 27303652 G A EMILIN1 Missense_Mutation p.D115N 0.39 possibly_damaging(0.588) TCGA-AA-A010-01 2 27375670 27375670 G T TCF23 Missense_Mutation p.V194F 0.38 deleterious(0.04) benign(0.347) TCGA-AA-A010-01 2 27427384 27427384 G A SLC5A6 Missense_Mutation p.A317V 0.35 tolerated(0.1) possibly_damaging(0.449) TCGA-AA-A010-01 2 27440801 27440801 G A CAD Missense_Mutation p.A47T 0.38 deleterious(0) benign(0.397) TCGA-AA-A010-01 2 27456997 27456997 T C CAD Missense_Mutation p.I1174T 0.41 deleterious(0) probably_damaging(0.924) TCGA-AA-A010-01 2 27465798 27465798 G A CAD Missense_Mutation p.R2146Q 0.51 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 2 27499690 27499690 G T DNAJC5G Missense_Mutation p.D32Y 0.30 deleterious(0) possibly_damaging(0.779) TCGA-AA-A010-01 2 27551765 27551765 A C GTF3C2 Silent p.A691A 0.36 TCGA-AA-A010-01 2 27668187 27668187 G A IFT172 Nonsense_Mutation p.R1682* 0.43 TCGA-AA-A010-01 2 27669161 27669161 T C IFT172 Missense_Mutation p.D1574G 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 277042 277042 G A ACP1 Missense_Mutation p.S119N 0.34 tolerated(0.11) benign(0.007) TCGA-AA-A010-01 2 277235 277235 C T ACP1 Silent p.D136D 0.34 TCGA-AA-A010-01 2 27728610 27728610 G A GCKR Missense_Mutation p.R259Q 0.39 tolerated(0.17) benign(0.213) TCGA-AA-A010-01 2 27746148 27746148 G A GCKR Missense_Mutation p.A574T 0.31 deleterious(0) probably_damaging(0.952) TCGA-AA-A010-01 2 27800430 27800430 G A C2orf16 Missense_Mutation p.E331K 0.40 tolerated(0.21) benign(0.01) TCGA-AA-A010-01 2 27801363 27801363 G T C2orf16 Nonsense_Mutation p.E642* 0.44 TCGA-AA-A010-01 2 27801557 27801557 A G C2orf16 Silent p.G706G 0.40 TCGA-AA-A010-01 2 27804562 27804562 G T C2orf16 Missense_Mutation p.R1708I 0.34 deleterious(0.03) possibly_damaging(0.661) TCGA-AA-A010-01 2 27804854 27804854 A G C2orf16 Silent p.R1805R 0.34 TCGA-AA-A010-01 2 27852303 27852303 C A GPN1 Intron 0.39 TCGA-AA-A010-01 2 27892242 27892242 C T SLC4A1AP Missense_Mutation p.R445W 0.46 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 2 27898421 27898421 G T SLC4A1AP Missense_Mutation p.K456N 0.41 deleterious(0) possibly_damaging(0.646) TCGA-AA-A010-01 2 28032906 28032906 G A RBKS Intron 0.33 TCGA-AA-A010-01 2 28755049 28755049 C A PLB1 Silent p.P181P 0.40 TCGA-AA-A010-01 2 28855867 28855867 C T PLB1 Silent p.R1353R 0.49 TCGA-AA-A010-01 2 29136955 29136955 G A WDR43 Silent p.T209T 0.39 TCGA-AA-A010-01 2 29165184 29165184 G A WDR43 Missense_Mutation p.A581T 0.27 tolerated(0.21) benign(0.027) TCGA-AA-A010-01 2 29258518 29258518 T C FAM179A Missense_Mutation p.V805A 0.44 deleterious(0.02) possibly_damaging(0.624) TCGA-AA-A010-01 2 29274841 29274841 A C FAM179A Missense_Mutation p.K981T 0.35 deleterious(0.05) benign(0.046) TCGA-AA-A010-01 2 30142907 30142907 C G ALK Missense_Mutation p.A207P 0.35 deleterious_low_confidence(0) possibly_damaging(0.771) TCGA-AA-A010-01 2 30863018 30863018 G T LCLAT1 Missense_Mutation p.A260S 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-AA-A010-01 2 31147603 31147603 T C GALNT14 Intron 0.39 TCGA-AA-A010-01 2 31167749 31167749 G A GALNT14 Missense_Mutation p.R273C 0.28 deleterious(0) probably_damaging(0.928) TCGA-AA-A010-01 2 31416023 31416023 G A CAPN14 Missense_Mutation p.A363V 0.37 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 2 31422398 31422398 C A CAPN14 Nonsense_Mutation p.E243* 0.31 TCGA-AA-A010-01 2 31489265 31489265 G A EHD3 Missense_Mutation p.D435N 0.35 tolerated(0.25) benign(0.321) TCGA-AA-A010-01 2 31562527 31562527 A G XDH Missense_Mutation p.V1201A 0.37 deleterious(0.01) benign(0.175) TCGA-AA-A010-01 2 31573079 31573079 C T XDH Missense_Mutation p.R881Q 0.27 tolerated(0.23) benign(0.269) TCGA-AA-A010-01 2 32249318 32249318 T G DPY30 Missense_Mutation p.N79H 0.39 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 2 32475156 32475156 C T NLRC4 Missense_Mutation p.D593N 0.39 tolerated(0.18) benign(0.048) TCGA-AA-A010-01 2 32475265 32475265 C T NLRC4 Silent p.E556E 0.42 TCGA-AA-A010-01 2 32476423 32476423 T G NLRC4 Missense_Mutation p.E170D 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 2 3261114 3261114 C T TSSC1 Silent p.E124E 0.44 TCGA-AA-A010-01 2 32640719 32640719 A C BIRC6 Missense_Mutation p.N787T 0.46 benign(0.014) TCGA-AA-A010-01 2 32710802 32710802 G A BIRC6 Missense_Mutation p.A2597T 0.33 possibly_damaging(0.874) TCGA-AA-A010-01 2 32713764 32713764 T C BIRC6 Missense_Mutation p.V2693A 0.35 benign(0.001) TCGA-AA-A010-01 2 32733144 32733144 A C BIRC6 Missense_Mutation p.K3266N 0.41 probably_damaging(0.957) TCGA-AA-A010-01 2 32800401 32800401 G T BIRC6 Missense_Mutation p.K4441N 0.38 probably_damaging(0.994) TCGA-AA-A010-01 2 33614284 33614284 C T LTBP1 Missense_Mutation p.T1582M 0.27 tolerated(0.12) benign(0.011) TCGA-AA-A010-01 2 33780598 33780598 C A RASGRP3 Missense_Mutation p.L515I 0.39 tolerated(0.21) possibly_damaging(0.81) TCGA-AA-A010-01 2 33952695 33952695 A C AC009499.1 Intron 0.40 TCGA-AA-A010-01 2 3405664 3405664 C T TRAPPC12 Silent p.I388I 0.35 TCGA-AA-A010-01 2 3428392 3428392 C A TRAPPC12 Missense_Mutation p.L459I 0.40 deleterious(0.02) possibly_damaging(0.878) TCGA-AA-A010-01 2 36779403 36779403 T A FEZ2 3'UTR 0.24 TCGA-AA-A010-01 2 3691072 3691072 G A COLEC11 Missense_Mutation p.G137R 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 37032612 37032612 C A VIT Missense_Mutation p.F398L 0.42 deleterious(0.01) probably_damaging(0.96) TCGA-AA-A010-01 2 37215941 37215941 G T HEATR5B Nonsense_Mutation p.S1920* 0.27 TCGA-AA-A010-01 2 37255825 37255825 A C HEATR5B Missense_Mutation p.S1200R 0.36 deleterious(0.01) benign(0.419) TCGA-AA-A010-01 2 37395089 37395089 A G SULT6B1 Missense_Mutation p.C263R 0.32 deleterious(0) probably_damaging(0.946) TCGA-AA-A010-01 2 37426905 37426905 G A CEBPZ-AS1 Missense_Mutation p.E20K 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-AA-A010-01 2 37428775 37428775 T G CEBPZ 3'UTR 0.38 TCGA-AA-A010-01 2 37475354 37475354 A C NDUFAF7 Missense_Mutation p.K396T 0.32 tolerated(0.19) benign(0.008) TCGA-AA-A010-01 2 37505121 37505121 C T PRKD3 Missense_Mutation p.S395N 0.38 deleterious(0.01) benign(0.278) TCGA-AA-A010-01 2 38156713 38156713 A C RMDN2 Missense_Mutation p.E98A 0.38 tolerated(0.07) probably_damaging(0.954) TCGA-AA-A010-01 2 38536613 38536613 G T ATL2 Missense_Mutation p.L327M 0.46 deleterious(0.04) probably_damaging(0.975) TCGA-AA-A010-01 2 39088296 39088296 G A DHX57 Missense_Mutation p.S419L 0.34 tolerated(0.31) benign(0.009) TCGA-AA-A010-01 2 39088530 39088530 G T DHX57 Missense_Mutation p.S341Y 0.36 deleterious(0.01) probably_damaging(0.936) TCGA-AA-A010-01 2 39199038 39199038 C A ARHGEF33 Intron 0.41 TCGA-AA-A010-01 2 39281940 39281940 C A SOS1 Missense_Mutation p.D179Y 0.36 deleterious(0) probably_damaging(0.977) TCGA-AA-A010-01 2 39347545 39347545 G A SOS1 Missense_Mutation p.P7S 0.70 tolerated_low_confidence(0.8) benign(0.002) TCGA-AA-A010-01 2 39440539 39440539 A G CDKL4 Splice_Site p.X121_splice 0.44 TCGA-AA-A010-01 2 39509677 39509677 G T MAP4K3 Missense_Mutation p.L536I 0.34 deleterious(0) possibly_damaging(0.505) TCGA-AA-A010-01 2 39553346 39553346 T G MAP4K3 Silent p.G201G 0.37 TCGA-AA-A010-01 2 39934188 39934188 G T TMEM178A Splice_Site p.X172_splice 0.35 TCGA-AA-A010-01 2 40656181 40656181 C A SLC8A1 Missense_Mutation p.G414W 0.53 deleterious(0.01) possibly_damaging(0.75) TCGA-AA-A010-01 2 40656677 40656677 G A SLC8A1 Silent p.F248F 0.44 TCGA-AA-A010-01 2 40657228 40657228 C A SLC8A1 Nonsense_Mutation p.E65* 0.35 TCGA-AA-A010-01 2 42557059 42557059 C A EML4 Silent p.V886V 0.41 TCGA-AA-A010-01 2 42578286 42578286 T G COX7A2L 3'UTR 0.41 TCGA-AA-A010-01 2 42806293 42806293 G A MTA3 Missense_Mutation p.R48Q 0.36 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 2 43801632 43801632 C A THADA Missense_Mutation p.E524D 0.36 tolerated(0.38) benign(0.02) TCGA-AA-A010-01 2 43937159 43937159 G T PLEKHH2 Missense_Mutation p.S666I 0.41 deleterious(0) benign(0.238) TCGA-AA-A010-01 2 44023859 44023859 T G DYNC2LI1 Missense_Mutation p.D193E 0.24 tolerated(0.6) benign(0.016) TCGA-AA-A010-01 2 44028834 44028834 C A DYNC2LI1 Missense_Mutation p.S263Y 0.22 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 2 44073388 44073388 G A ABCG8 Missense_Mutation p.G87D 0.34 tolerated(0.17) possibly_damaging(0.709) TCGA-AA-A010-01 2 44102444 44102444 G A ABCG8 Missense_Mutation p.A550T 0.43 tolerated(0.1) possibly_damaging(0.499) TCGA-AA-A010-01 2 44541210 44541210 G T SLC3A1 Intron 0.29 TCGA-AA-A010-01 2 44586756 44586756 G A PREPL Silent p.F33F 0.39 TCGA-AA-A010-01 2 45233535 45233535 G A SIX2 Missense_Mutation p.T217I 0.30 deleterious(0.01) possibly_damaging(0.572) TCGA-AA-A010-01 2 45812774 45812774 T A SRBD1 Missense_Mutation p.E263V 0.43 deleterious(0) probably_damaging(0.943) TCGA-AA-A010-01 2 45826675 45826675 C A SRBD1 Missense_Mutation p.E187D 0.36 tolerated_low_confidence(0.49) benign(0.002) TCGA-AA-A010-01 2 46574157 46574157 C T EPAS1 Nonsense_Mutation p.R58* 0.40 TCGA-AA-A010-01 2 46605835 46605835 G A EPAS1 Missense_Mutation p.D495N 0.27 deleterious(0.03) benign(0.032) TCGA-AA-A010-01 2 46808358 46808358 C A RHOQ 3'UTR 0.42 TCGA-AA-A010-01 2 46986132 46986132 C T SOCS5 Missense_Mutation p.R155C 0.40 tolerated(0.06) probably_damaging(0.998) TCGA-AA-A010-01 2 47277121 47277121 C T TTC7A Silent p.G651G 0.36 TCGA-AA-A010-01 2 47382468 47382468 C T C2orf61 5'UTR 0.55 TCGA-AA-A010-01 2 47693935 47693935 A C MSH2 Missense_Mutation p.K550T 0.39 deleterious(0.01) probably_damaging(0.924) TCGA-AA-A010-01 2 48027958 48027958 G T MSH6 Nonsense_Mutation p.E946* 0.38 TCGA-AA-A010-01 2 48848035 48848035 C T STON1-GTF2A1L Missense_Mutation p.R727W 0.35 deleterious(0.02) probably_damaging(1) TCGA-AA-A010-01 2 48873645 48873645 G T STON1-GTF2A1L Missense_Mutation p.A852S 0.32 tolerated(0.12) benign(0.16) TCGA-AA-A010-01 2 49189991 49189991 C T FSHR Missense_Mutation p.E657K 0.37 tolerated(0.64) benign(0.037) TCGA-AA-A010-01 2 50149004 50149004 G T NRXN1 3'UTR 0.39 TCGA-AA-A010-01 2 50723166 50723166 G T NRXN1 Missense_Mutation p.L1023I 0.34 deleterious(0.01) possibly_damaging(0.829) TCGA-AA-A010-01 2 50724612 50724612 G A NRXN1 Missense_Mutation p.S953L 0.36 deleterious(0.02) benign(0.135) TCGA-AA-A010-01 2 50758479 50758479 G A NRXN1 Missense_Mutation p.R785W 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 50883541 50883541 G T NRXN1 Intron 0.21 TCGA-AA-A010-01 2 54036356 54036356 C T ERLEC1 Silent p.V349V 0.34 TCGA-AA-A010-01 2 54081162 54081162 G A GPR75 Silent p.V244V 0.36 TCGA-AA-A010-01 2 54786007 54786007 G T SPTBN1 Intron 0.38 TCGA-AA-A010-01 2 54858241 54858241 G A SPTBN1 Silent p.A1019A 0.44 TCGA-AA-A010-01 2 55056587 55056587 C A EML6 Missense_Mutation p.L274I 0.46 tolerated(0.05) benign(0.21) TCGA-AA-A010-01 2 55155620 55155620 G T EML6 Missense_Mutation p.E1282D 0.31 tolerated(0.23) benign(0.028) TCGA-AA-A010-01 2 55200179 55200179 G A RTN4 3'UTR 0.33 TCGA-AA-A010-01 2 55253125 55253125 C A RTN4 Nonsense_Mutation p.E704* 0.17 TCGA-AA-A010-01 2 55253531 55253531 A G RTN4 Silent p.G568G 0.45 TCGA-AA-A010-01 2 55254620 55254620 T G RTN4 Missense_Mutation p.E205D 0.37 tolerated(0.25) benign(0.009) TCGA-AA-A010-01 2 55463927 55463927 C A MTIF2 Missense_Mutation p.D681Y 0.28 deleterious(0) probably_damaging(0.933) TCGA-AA-A010-01 2 55479743 55479743 T C MTIF2 Silent p.G237G 0.34 TCGA-AA-A010-01 2 55523592 55523592 G A CCDC88A Silent p.D1630D 0.39 TCGA-AA-A010-01 2 55750887 55750887 G T CCDC104 Nonsense_Mutation p.E71* 0.39 TCGA-AA-A010-01 2 55813839 55813839 G T SMEK2 Missense_Mutation p.S344Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 2 55906922 55906922 G A PNPT1 Nonsense_Mutation p.R192* 0.35 TCGA-AA-A010-01 2 55920850 55920850 C A PNPT1 Missense_Mutation p.A37S 0.37 tolerated(0.57) benign(0.002) TCGA-AA-A010-01 2 56419886 56419886 G A CCDC85A Missense_Mutation p.R184H 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 56419896 56419896 C T CCDC85A Silent p.I187I 0.34 TCGA-AA-A010-01 2 56420022 56420022 G A CCDC85A Silent p.A229A 0.43 TCGA-AA-A010-01 2 5835295 5835295 A C SOX11 3'UTR 0.39 TCGA-AA-A010-01 2 5838299 5838299 T C SOX11 3'UTR 0.37 TCGA-AA-A010-01 2 5838350 5838350 C T SOX11 3'UTR 0.38 TCGA-AA-A010-01 2 5839145 5839145 C A SOX11 3'UTR 0.21 TCGA-AA-A010-01 2 5840406 5840406 T G SOX11 3'UTR 0.37 TCGA-AA-A010-01 2 60687954 60687954 C T BCL11A Missense_Mutation p.R698H 0.42 deleterious(0.01) possibly_damaging(0.622) TCGA-AA-A010-01 2 61121549 61121549 A G REL Silent p.G57G 0.34 TCGA-AA-A010-01 2 61145543 61145543 C T REL Missense_Mutation p.R219C 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A010-01 2 61308610 61308610 C A KIAA1841 Missense_Mutation p.L232I 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 2 61324961 61324961 C T KIAA1841 Missense_Mutation p.R447W 0.29 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 2 61390006 61390006 A T C2orf74 Missense_Mutation p.K49M 0.32 tolerated(0.06) possibly_damaging(0.891) TCGA-AA-A010-01 2 61391556 61391556 G T C2orf74 Missense_Mutation p.R160I 0.37 deleterious(0) possibly_damaging(0.883) TCGA-AA-A010-01 2 61415543 61415543 G A USP34 Silent p.D3445D 0.34 TCGA-AA-A010-01 2 61715367 61715367 C T XPO1 Missense_Mutation p.R749Q 0.42 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 2 62053614 62053614 C A FAM161A Missense_Mutation p.E709D 0.40 tolerated(0.05) unknown(0) TCGA-AA-A010-01 2 62451139 62451139 G T B3GNT2 3'UTR 0.34 TCGA-AA-A010-01 2 62728257 62728257 T G TMEM17 3'UTR 0.40 TCGA-AA-A010-01 2 62728565 62728565 G T TMEM17 Missense_Mutation p.L126I 0.27 tolerated(0.08) probably_damaging(0.942) TCGA-AA-A010-01 2 63272158 63272158 C T EHBP1 Intron 0.37 TCGA-AA-A010-01 2 63661024 63661024 C T WDPCP Missense_Mutation p.R227Q 0.35 deleterious(0.01) probably_damaging(0.967) TCGA-AA-A010-01 2 63712118 63712118 C T WDPCP Missense_Mutation p.R86Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 2 64161084 64161084 C A VPS54 Nonsense_Mutation p.E488* 0.37 TCGA-AA-A010-01 2 64189193 64189193 G A VPS54 Missense_Mutation p.R337W 0.40 deleterious(0.01) possibly_damaging(0.908) TCGA-AA-A010-01 2 64778948 64778948 G T AFTPH Nonsense_Mutation p.E114* 0.38 TCGA-AA-A010-01 2 64863045 64863045 G A SERTAD2 3'UTR 0.42 TCGA-AA-A010-01 2 65243616 65243616 C T SLC1A4 Silent p.I281I 0.42 TCGA-AA-A010-01 2 66667041 66667041 C T MEIS1 Silent p.R102R 0.38 TCGA-AA-A010-01 2 66667697 66667697 C T MEIS1 Missense_Mutation p.R129C 0.31 deleterious(0) benign(0.11) TCGA-AA-A010-01 2 67630382 67630382 G T ETAA1 Nonsense_Mutation p.E190* 0.26 TCGA-AA-A010-01 2 67632360 67632360 T G ETAA1 Missense_Mutation p.I849S 0.31 deleterious(0) possibly_damaging(0.733) TCGA-AA-A010-01 2 67637175 67637175 A C ETAA1 3'UTR 0.40 TCGA-AA-A010-01 2 68384760 68384760 A G WDR92 5'Flank 0.46 TCGA-AA-A010-01 2 68592345 68592345 C T PLEK 5'UTR 0.56 TCGA-AA-A010-01 2 68615556 68615556 A G PLEK Missense_Mutation p.D232G 0.37 deleterious(0.04) probably_damaging(0.929) TCGA-AA-A010-01 2 68882510 68882510 G T PROKR1 Missense_Mutation p.E328D 0.36 deleterious(0.01) possibly_damaging(0.517) TCGA-AA-A010-01 2 69049666 69049666 C A ARHGAP25 Silent p.I465I 0.47 TCGA-AA-A010-01 2 69049681 69049681 C A ARHGAP25 Missense_Mutation p.F470L 0.33 tolerated(0.58) benign(0.072) TCGA-AA-A010-01 2 70045757 70045757 C G ANXA4 Missense_Mutation p.Q219E 0.37 tolerated(0.06) benign(0.01) TCGA-AA-A010-01 2 70188201 70188201 A G ASPRV1 Missense_Mutation p.V207A 0.38 tolerated(0.12) probably_damaging(0.995) TCGA-AA-A010-01 2 70314824 70314824 G T PCBP1 5'UTR 0.27 TCGA-AA-A010-01 2 70504364 70504364 G A PCYOX1 Missense_Mutation p.R453Q 0.42 tolerated(0.5) benign(0.079) TCGA-AA-A010-01 2 71186150 71186150 C T ATP6V1B1 Missense_Mutation p.R124W 0.44 deleterious(0.02) possibly_damaging(0.448) TCGA-AA-A010-01 2 71188128 71188128 C T ATP6V1B1 Silent p.F221F 0.37 TCGA-AA-A010-01 2 71357559 71357559 A C MPHOSPH10 5'UTR 0.38 TCGA-AA-A010-01 2 71650566 71650566 G T ZNF638 Missense_Mutation p.D1308Y 0.32 deleterious(0) possibly_damaging(0.759) TCGA-AA-A010-01 2 71660326 71660326 C A ZNF638 Missense_Mutation p.F1928L 0.37 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 2 71871096 71871096 A G DYSF Missense_Mutation p.E1510G 0.32 tolerated(0.05) probably_damaging(0.958) TCGA-AA-A010-01 2 73316353 73316353 G A RAB11FIP5 Silent p.S174S 0.37 TCGA-AA-A010-01 2 73438164 73438164 G T NOTO 3'UTR 0.29 TCGA-AA-A010-01 2 73447284 73447284 G A SMYD5 Missense_Mutation p.R104H 0.33 deleterious(0.05) benign(0.012) TCGA-AA-A010-01 2 73453139 73453139 G T SMYD5 3'UTR 0.44 TCGA-AA-A010-01 2 73490373 73490373 G A FBXO41 Silent p.I713I 0.31 TCGA-AA-A010-01 2 73676231 73676231 G A ALMS1 Silent p.A858A 0.33 TCGA-AA-A010-01 2 73679850 73679850 G T ALMS1 Missense_Mutation p.D2065Y 0.36 possibly_damaging(0.773) TCGA-AA-A010-01 2 73680674 73680674 G A ALMS1 Silent p.T2339T 0.21 TCGA-AA-A010-01 2 73717662 73717662 C T ALMS1 Missense_Mutation p.S2858L 0.36 benign(0.003) TCGA-AA-A010-01 2 73799578 73799578 A G ALMS1 Missense_Mutation p.H3524R 0.30 benign(0.299) TCGA-AA-A010-01 2 73800333 73800333 G A ALMS1 Missense_Mutation p.E3776K 0.39 probably_damaging(0.984) TCGA-AA-A010-01 2 73868779 73868779 C A NAT8 5'UTR 0.35 TCGA-AA-A010-01 2 74087188 74087188 C A STAMBP Missense_Mutation p.F376L 0.34 tolerated(0.09) benign(0.297) TCGA-AA-A010-01 2 74177727 74177727 G A DGUOK Silent p.K153K 0.34 TCGA-AA-A010-01 2 74274283 74274283 G A TET3 Silent p.E278E 0.41 TCGA-AA-A010-01 2 74454191 74454191 G A SLC4A5 Missense_Mutation p.H1011Y 0.37 tolerated(0.08) probably_damaging(0.995) TCGA-AA-A010-01 2 74469158 74469158 G A SLC4A5 Missense_Mutation p.A694V 0.37 tolerated(0.38) benign(0.014) TCGA-AA-A010-01 2 74489341 74489341 C T SLC4A5 Missense_Mutation p.S245N 0.34 tolerated(0.21) benign(0.016) TCGA-AA-A010-01 2 74690333 74690333 C T MOGS Missense_Mutation p.A254T 0.37 tolerated(0.55) benign(0.015) TCGA-AA-A010-01 2 74779758 74779758 G A LOXL3 Nonsense_Mutation p.R2* 0.38 TCGA-AA-A010-01 2 74784302 74784302 A C DOK1 3'UTR 0.52 TCGA-AA-A010-01 2 74842229 74842229 G T M1AP Silent p.L96L 0.34 TCGA-AA-A010-01 2 74900673 74900673 C T SEMA4F Missense_Mutation p.R214W 0.32 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 2 75116577 75116577 G T HK2 Missense_Mutation p.D861Y 0.38 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 2 75347750 75347750 G A TACR1 Silent p.V178V 0.32 TCGA-AA-A010-01 2 75897403 75897403 C T GCFC2 Missense_Mutation p.R655H 0.35 tolerated(0.35) benign(0.027) TCGA-AA-A010-01 2 76975860 76975860 C T LRRTM4 Silent p.S578S 0.38 TCGA-AA-A010-01 2 77746572 77746572 G T LRRTM4 Silent p.S141S 0.33 TCGA-AA-A010-01 2 79254222 79254222 C A REG3G Silent p.S86S 0.40 TCGA-AA-A010-01 2 79255424 79255424 C A REG3G 3'UTR 0.30 TCGA-AA-A010-01 2 79384370 79384370 G T REG3A Silent p.V170V 0.38 TCGA-AA-A010-01 2 84686497 84686497 G T SUCLG1 5'UTR 0.43 TCGA-AA-A010-01 2 84848670 84848670 T G DNAH6 Missense_Mutation p.F1356V 0.42 tolerated(0.21) benign(0.001) TCGA-AA-A010-01 2 84851484 84851484 A G DNAH6 Silent p.R1389R 0.47 TCGA-AA-A010-01 2 84896557 84896557 C T DNAH6 Missense_Mutation p.R2077C 0.39 deleterious(0) possibly_damaging(0.828) TCGA-AA-A010-01 2 84921378 84921378 C A DNAH6 Missense_Mutation p.A2433D 0.44 deleterious(0) probably_damaging(0.948) TCGA-AA-A010-01 2 84940330 84940330 A T DNAH6 Missense_Mutation p.N3164Y 0.32 deleterious(0) possibly_damaging(0.89) TCGA-AA-A010-01 2 85051313 85051313 C A TRABD2A Missense_Mutation p.K317N 0.40 tolerated(0.37) benign(0.006) TCGA-AA-A010-01 2 85262221 85262221 G A KCMF1 Silent p.T89T 0.40 TCGA-AA-A010-01 2 85570295 85570295 G T RETSAT 3'UTR 0.25 TCGA-AA-A010-01 2 85617789 85617789 G T ELMOD3 3'UTR 0.32 TCGA-AA-A010-01 2 85770313 85770313 G T MAT2A Intron 0.28 TCGA-AA-A010-01 2 85776993 85776993 T C GGCX 3'UTR 0.45 TCGA-AA-A010-01 2 85921529 85921529 C T GNLY 5'UTR 0.29 TCGA-AA-A010-01 2 85924649 85924649 G A GNLY Silent p.A92A 0.40 TCGA-AA-A010-01 2 85924678 85924678 G A GNLY Missense_Mutation p.R102Q 0.41 tolerated(0.27) benign(0.002) TCGA-AA-A010-01 2 86269164 86269164 G A POLR1A Silent p.A1140A 0.37 TCGA-AA-A010-01 2 86297146 86297146 G A POLR1A Missense_Mutation p.P621S 0.32 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 2 86352131 86352131 G A PTCD3 Missense_Mutation p.A244T 0.34 deleterious(0) probably_damaging(0.934) TCGA-AA-A010-01 2 86359542 86359542 C A PTCD3 Missense_Mutation p.F456L 0.35 tolerated(0.48) benign(0.006) TCGA-AA-A010-01 2 86373281 86373281 G A IMMT Missense_Mutation p.R525C 0.36 deleterious(0) possibly_damaging(0.766) TCGA-AA-A010-01 2 86444120 86444120 G T REEP1 3'UTR 0.44 TCGA-AA-A010-01 2 86790445 86790445 C A CHMP3 Intron 0.38 TCGA-AA-A010-01 2 87085303 87085303 G A CD8B Missense_Mutation p.R94W 0.40 tolerated(0.07) benign(0.045) TCGA-AA-A010-01 2 87201227 87201227 G T RGPD1 Missense_Mutation p.Q427H 0.16 deleterious(0) probably_damaging(0.934) TCGA-AA-A010-01 2 87214106 87214106 G T RGPD1 Missense_Mutation p.D1354Y 0.38 deleterious(0) probably_damaging(0.915) TCGA-AA-A010-01 2 87755153 87755153 A C LINC00152 RNA 0.30 TCGA-AA-A010-01 2 88405960 88405960 C A SMYD1 Silent p.A366A 0.36 TCGA-AA-A010-01 2 8871940 8871940 C A KIDINS220 Missense_Mutation p.R1409I 0.35 tolerated_low_confidence(0.07) possibly_damaging(0.62) TCGA-AA-A010-01 2 89035207 89035207 G T RPIA Missense_Mutation p.K183N 0.45 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 89161569 89161569 G T IGKC 5'Flank 0.37 TCGA-AA-A010-01 2 8919170 8919170 G A KIDINS220 Missense_Mutation p.R824W 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 2 89309951 89309951 C A IGKV1-9 Missense_Mutation p.D2Y 0.32 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-AA-A010-01 2 89442234 89442234 G A IGKV3-20 Silent p.Y57Y 0.41 TCGA-AA-A010-01 2 8998878 8998878 A C MBOAT2 Missense_Mutation p.F498L 0.36 tolerated(0.43) benign(0.003) TCGA-AA-A010-01 2 90078048 90078048 G A IGKV3D-20 Missense_Mutation p.A29T 0.37 tolerated(0.19) possibly_damaging(0.512) TCGA-AA-A010-01 2 90078272 90078272 T G IGKV3D-20 Missense_Mutation p.D103E 0.33 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 2 90109003 90109003 G T IGKV6D-41 Missense_Mutation p.D90Y 0.38 deleterious(0) possibly_damaging(0.628) TCGA-AA-A010-01 2 9013426 9013426 G A MBOAT2 Missense_Mutation p.A232V 0.40 tolerated(0.06) possibly_damaging(0.473) TCGA-AA-A010-01 2 90193180 90193180 C A IGKV1D-13 Missense_Mutation p.S36Y 0.24 deleterious(0) probably_damaging(0.962) TCGA-AA-A010-01 2 90193383 90193383 G T IGKV1D-13 Missense_Mutation p.D104Y 0.22 deleterious(0) possibly_damaging(0.496) TCGA-AA-A010-01 2 90458425 90458425 C A CH17-132F21.1 Missense_Mutation p.S34Y 0.27 TCGA-AA-A010-01 2 9496399 9496399 G T ASAP2 Nonsense_Mutation p.E418* 0.28 TCGA-AA-A010-01 2 95522776 95522776 C T ANKRD20A8P RNA 0.39 TCGA-AA-A010-01 2 95541392 95541392 G T TEKT4 Missense_Mutation p.K332N 0.34 deleterious(0.05) benign(0.12) TCGA-AA-A010-01 2 95753105 95753105 C T MRPS5 Silent p.T430T 0.32 TCGA-AA-A010-01 2 95815897 95815897 C T ZNF514 Silent p.S111S 0.34 TCGA-AA-A010-01 2 95847397 95847397 G A ZNF2 Missense_Mutation p.R275Q 0.42 tolerated(0.66) possibly_damaging(0.694) TCGA-AA-A010-01 2 95941694 95941694 C T PROM2 Missense_Mutation p.A104V 0.34 deleterious(0.05) probably_damaging(0.911) TCGA-AA-A010-01 2 96012796 96012796 C T KCNIP3 Intron 0.42 TCGA-AA-A010-01 2 96047411 96047411 A C KCNIP3 Missense_Mutation p.N172T 0.34 deleterious(0.01) possibly_damaging(0.824) TCGA-AA-A010-01 2 9618471 9618471 C A IAH1 Missense_Mutation p.F85L 0.35 deleterious(0.03) probably_damaging(0.951) TCGA-AA-A010-01 2 96260080 96260080 C A TRIM43 Missense_Mutation p.F103L 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 2 9642335 9642335 T C ADAM17 Missense_Mutation p.N539D 0.31 tolerated(0.32) benign(0.05) TCGA-AA-A010-01 2 96457955 96457955 C A AC008268.2 RNA 0.26 TCGA-AA-A010-01 2 96801137 96801137 C A ASTL Nonsense_Mutation p.E66* 0.37 TCGA-AA-A010-01 2 96858167 96858167 G A STARD7 Silent p.F261F 0.42 TCGA-AA-A010-01 2 96953612 96953612 G A SNRNP200 Silent p.I1118I 0.40 TCGA-AA-A010-01 2 97033011 97033011 T C NCAPH Missense_Mutation p.I633T 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 2 9731620 9731620 C A YWHAQ Missense_Mutation p.A107S 0.30 deleterious_low_confidence(0.04) benign(0.005) TCGA-AA-A010-01 2 97365350 97365350 C T FER1L5 RNA 0.38 TCGA-AA-A010-01 2 97365351 97365351 G A FER1L5 RNA 0.31 TCGA-AA-A010-01 2 97366084 97366084 C A FER1L5 RNA 0.46 TCGA-AA-A010-01 2 97370066 97370066 A G LMAN2L 3'Flank 0.38 TCGA-AA-A010-01 2 97877447 97877447 G A ANKRD36 Silent p.T1146T 0.16 TCGA-AA-A010-01 2 97881190 97881190 C T ANKRD36 Missense_Mutation p.S1210L 0.27 tolerated(0.2) benign(0.003) TCGA-AA-A010-01 2 98340993 98340993 C T ZAP70 Intron 0.26 TCGA-AA-A010-01 2 98504541 98504541 C T TMEM131 Silent p.E111E 0.26 TCGA-AA-A010-01 2 99012328 99012328 T C CNGA3 Missense_Mutation p.M232T 0.43 deleterious(0) benign(0.102) TCGA-AA-A010-01 2 99261958 99261958 T G MGAT4A Missense_Mutation p.K274N 0.42 deleterious(0.03) possibly_damaging(0.837) TCGA-AA-A010-01 2 99412603 99412603 G T KIAA1211L Nonsense_Mutation p.S910* 0.40 TCGA-AA-A010-01 2 99695134 99695134 A C TSGA10 Missense_Mutation p.S290R 0.42 deleterious(0.01) possibly_damaging(0.602) TCGA-AA-A010-01 2 99725403 99725403 C A TSGA10 Nonsense_Mutation p.E35* 0.33 TCGA-AA-A010-01 2 99778691 99778691 G A LIPT1 Missense_Mutation p.E91K 0.36 tolerated(0.47) benign(0.015) TCGA-AA-A010-01 2 99861830 99861830 G A LYG2 Silent p.C92C 0.39 TCGA-AA-A010-01 3 100086982 100086982 G T TOMM70A Missense_Mutation p.L527M 0.25 deleterious(0.03) benign(0.403) TCGA-AA-A010-01 3 100170615 100170615 C A LNP1 Missense_Mutation p.S70Y 0.23 tolerated(0.15) probably_damaging(1) TCGA-AA-A010-01 3 100328564 100328564 G T GPR128 5'UTR 0.32 TCGA-AA-A010-01 3 100373865 100373865 G A GPR128 Silent p.P522P 0.32 TCGA-AA-A010-01 3 100387896 100387896 G T GPR128 Missense_Mutation p.D695Y 0.39 deleterious(0) probably_damaging(0.974) TCGA-AA-A010-01 3 100413801 100413801 G A GPR128 Missense_Mutation p.E784K 0.29 tolerated(0.12) benign(0.174) TCGA-AA-A010-01 3 100451455 100451455 C A TFG Missense_Mutation p.N173K 0.43 tolerated(0.06) benign(0.04) TCGA-AA-A010-01 3 100467326 100467326 G A TFG Missense_Mutation p.R385H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-AA-A010-01 3 100621475 100621475 C A ABI3BP Missense_Mutation p.K112N 0.30 deleterious(0) benign(0.403) TCGA-AA-A010-01 3 10065301 10065302 - A FANCD2 5'Flank 0.28 TCGA-AA-A010-01 3 100948265 100948265 C A IMPG2 Nonsense_Mutation p.E1198* 0.37 TCGA-AA-A010-01 3 100962706 100962706 G T IMPG2 Silent p.I823I 0.37 TCGA-AA-A010-01 3 100963059 100963059 T C IMPG2 Missense_Mutation p.I706V 0.29 tolerated(0.31) benign(0.005) TCGA-AA-A010-01 3 101483773 101483773 C T CEP97 Missense_Mutation p.T659I 0.45 tolerated(0.1) benign(0.02) TCGA-AA-A010-01 3 10242116 10242116 A C IRAK2 Missense_Mutation p.K114T 0.39 tolerated(0.26) benign(0.021) TCGA-AA-A010-01 3 10280549 10280549 G A IRAK2 Missense_Mutation p.D531N 0.36 deleterious(0) probably_damaging(0.948) TCGA-AA-A010-01 3 10290911 10290911 G T TATDN2 Missense_Mutation p.K9N 0.45 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-AA-A010-01 3 10342783 10342783 G A SEC13 3'UTR 0.38 TCGA-AA-A010-01 3 10382369 10382369 G A ATP2B2 Silent p.I979I 0.40 TCGA-AA-A010-01 3 107096815 107096815 C T CCDC54 Silent p.L127L 0.43 TCGA-AA-A010-01 3 107474461 107474461 C T BBX Missense_Mutation p.S281L 0.33 tolerated(0.08) probably_damaging(0.997) TCGA-AA-A010-01 3 107778347 107778347 T A CD47 Missense_Mutation p.T215S 0.33 deleterious(0) benign(0.296) TCGA-AA-A010-01 3 108211962 108211962 G T MYH15 Silent p.I278I 0.33 TCGA-AA-A010-01 3 108276119 108276119 G A KIAA1524 Missense_Mutation p.S719F 0.36 tolerated(0.09) benign(0.373) TCGA-AA-A010-01 3 108295159 108295159 A C KIAA1524 Missense_Mutation p.L285V 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A010-01 3 108541753 108541753 G T TRAT1 5'UTR 0.36 TCGA-AA-A010-01 3 108818291 108818291 C A MORC1 Missense_Mutation p.D113Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 3 108822743 108822743 C T MORC1 Missense_Mutation p.G59E 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 111297993 111297993 A G CD96 Silent p.Q237Q 0.37 TCGA-AA-A010-01 3 111297996 111297996 C A CD96 Silent p.I238I 0.38 TCGA-AA-A010-01 3 111312513 111312513 C T ZBED2 Missense_Mutation p.R179Q 0.42 tolerated(0.27) benign(0.002) TCGA-AA-A010-01 3 111319597 111319597 G T CD96 Missense_Mutation p.R324I 0.35 deleterious(0.04) benign(0.09) TCGA-AA-A010-01 3 111319702 111319702 C A CD96 Missense_Mutation p.S359Y 0.40 deleterious(0.03) possibly_damaging(0.642) TCGA-AA-A010-01 3 111564708 111564708 A C PLCXD2 3'UTR 0.35 TCGA-AA-A010-01 3 111632380 111632380 C T PHLDB2 Missense_Mutation p.A517V 0.41 tolerated(0.1) benign(0.001) TCGA-AA-A010-01 3 111763131 111763131 C A TMPRSS7 Missense_Mutation p.F41L 0.33 tolerated(0.23) benign(0.098) TCGA-AA-A010-01 3 111795940 111795940 C T TMPRSS7 Missense_Mutation p.R599C 0.37 tolerated(0.18) possibly_damaging(0.54) TCGA-AA-A010-01 3 111795976 111795976 C T TMPRSS7 Nonsense_Mutation p.R611* 0.34 TCGA-AA-A010-01 3 111899443 111899443 C A SLC9C1 Nonsense_Mutation p.G906* 0.36 TCGA-AA-A010-01 3 111923151 111923151 C A SLC9C1 Missense_Mutation p.D696Y 0.44 tolerated(0.12) benign(0.002) TCGA-AA-A010-01 3 112066653 112066653 G A CD200 Missense_Mutation p.D249N 0.25 tolerated(0.18) benign(0.014) TCGA-AA-A010-01 3 112358100 112358100 A G CCDC80 Missense_Mutation p.L218P 0.43 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 3 112647836 112647836 G A CD200R1 Missense_Mutation p.A199V 0.34 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 3 112648286 112648286 T G CD200R1 Missense_Mutation p.N91H 0.39 tolerated(0.07) benign(0.297) TCGA-AA-A010-01 3 11301192 11301192 C A HRH1 Missense_Mutation p.L157M 0.37 tolerated(0.59) possibly_damaging(0.842) TCGA-AA-A010-01 3 11302978 11302978 C T HRH1 3'UTR 0.27 TCGA-AA-A010-01 3 11304480 11304480 A C HRH1 3'UTR 0.34 TCGA-AA-A010-01 3 113286547 113286547 T G SIDT1 Missense_Mutation p.F169V 0.43 deleterious(0) possibly_damaging(0.78) TCGA-AA-A010-01 3 113376501 113376501 C T KIAA2018 Missense_Mutation p.R1343H 0.37 probably_damaging(0.999) TCGA-AA-A010-01 3 113376936 113376936 G T KIAA2018 Missense_Mutation p.S1198Y 0.30 possibly_damaging(0.526) TCGA-AA-A010-01 3 113377881 113377881 G T KIAA2018 Missense_Mutation p.S883Y 0.41 benign(0.003) TCGA-AA-A010-01 3 113464863 113464863 C A NAA50 5'UTR 0.24 TCGA-AA-A010-01 3 113679503 113679503 G T ZDHHC23 Intron 0.39 TCGA-AA-A010-01 3 113753983 113753983 G A KIAA1407 Missense_Mutation p.R203C 0.29 deleterious(0.03) probably_damaging(1) TCGA-AA-A010-01 3 113866391 113866391 C T DRD3 Missense_Mutation p.V133I 0.35 deleterious(0.04) possibly_damaging(0.47) TCGA-AA-A010-01 3 113955964 113955964 C T ZNF80 5'UTR 0.38 TCGA-AA-A010-01 3 114014692 114014692 G T TIGIT Missense_Mutation p.R121I 0.36 deleterious(0.02) possibly_damaging(0.459) TCGA-AA-A010-01 3 115382658 115382658 C T GAP43 Silent p.P11P 0.38 TCGA-AA-A010-01 3 115805177 115805177 C T LSAMP Missense_Mutation p.V128I 0.22 deleterious(0) possibly_damaging(0.753) TCGA-AA-A010-01 3 115805269 115805269 C T LSAMP Missense_Mutation p.R97Q 0.28 tolerated(1) benign(0.091) TCGA-AA-A010-01 3 11885566 11885566 C T TAMM41 Silent p.T85T 0.34 TCGA-AA-A010-01 3 11888131 11888131 A G TAMM41 5'UTR 0.33 TCGA-AA-A010-01 3 118922773 118922773 C T UPK1B Missense_Mutation p.L248F 0.48 deleterious(0.01) possibly_damaging(0.882) TCGA-AA-A010-01 3 118922915 118922915 G A UPK1B 3'UTR 0.48 TCGA-AA-A010-01 3 119132770 119132770 C A ARHGAP31 Missense_Mutation p.S665Y 0.37 deleterious(0.01) probably_damaging(0.935) TCGA-AA-A010-01 3 119180873 119180873 C T TMEM39A Missense_Mutation p.A17T 0.33 tolerated(0.16) benign(0.368) TCGA-AA-A010-01 3 119300937 119300937 C A ADPRH Intron 0.40 TCGA-AA-A010-01 3 119458111 119458111 G T MAATS1 Nonsense_Mutation p.E491* 0.37 TCGA-AA-A010-01 3 119463028 119463028 C T MAATS1 Silent p.D629D 0.38 TCGA-AA-A010-01 3 119595268 119595268 A G GSK3B Missense_Mutation p.W301R 0.35 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 3 119721075 119721075 C T GSK3B Missense_Mutation p.G34S 0.35 tolerated(0.21) benign(0.025) TCGA-AA-A010-01 3 119886034 119886034 C A GPR156 Nonsense_Mutation p.E764* 0.34 TCGA-AA-A010-01 3 119962555 119962555 A C GPR156 Silent p.T55T 0.37 TCGA-AA-A010-01 3 120130701 120130701 C A FSTL1 Nonsense_Mutation p.E100* 0.39 TCGA-AA-A010-01 3 120393751 120393751 C A HGD Missense_Mutation p.R58I 0.30 deleterious(0) probably_damaging(0.96) TCGA-AA-A010-01 3 120876375 120876375 C A STXBP5L Missense_Mutation p.H260N 0.33 deleterious(0.03) benign(0.06) TCGA-AA-A010-01 3 121207173 121207173 T - POLQ Frame_Shift_Del p.K1535Nfs*4 0.29 TCGA-AA-A010-01 3 121209199 121209199 C T POLQ Missense_Mutation p.R860Q 0.37 tolerated(0.07) benign(0.059) TCGA-AA-A010-01 3 121305090 121305090 G T ARGFX Missense_Mutation p.E197D 0.27 tolerated(0.47) benign(0.097) TCGA-AA-A010-01 3 121341452 121341452 A C FBXO40 Missense_Mutation p.K392N 0.46 tolerated(0.07) possibly_damaging(0.726) TCGA-AA-A010-01 3 121376175 121376175 G A HCLS1 Nonsense_Mutation p.R37* 0.37 TCGA-AA-A010-01 3 121409666 121409666 C A GOLGB1 Nonsense_Mutation p.E2849* 0.38 TCGA-AA-A010-01 3 121544988 121544988 C A IQCB1 Missense_Mutation p.E101D 0.40 deleterious(0.03) probably_damaging(0.99) TCGA-AA-A010-01 3 121575996 121575996 C T EAF2 Silent p.I159I 0.42 TCGA-AA-A010-01 3 121643232 121643232 T C SLC15A2 Splice_Site p.X345_splice 0.24 TCGA-AA-A010-01 3 121647369 121647369 T G SLC15A2 Missense_Mutation p.N436K 0.24 tolerated(0.76) benign(0.005) TCGA-AA-A010-01 3 121647371 121647371 C A SLC15A2 Missense_Mutation p.S437Y 0.25 tolerated(0.96) benign(0.009) TCGA-AA-A010-01 3 121712436 121712436 G T ILDR1 Missense_Mutation p.S387Y 0.37 tolerated(1) benign(0.08) TCGA-AA-A010-01 3 121724115 121724115 G A ILDR1 Nonsense_Mutation p.Q119* 0.33 TCGA-AA-A010-01 3 12187197 12187197 C T SYN2 RNA 0.31 TCGA-AA-A010-01 3 122002808 122002808 C T CASR Silent p.I679I 0.39 TCGA-AA-A010-01 3 122003582 122003582 C T CASR Silent p.P937P 0.36 TCGA-AA-A010-01 3 122133685 122133685 C T WDR5B Missense_Mutation p.D231N 0.42 tolerated(0.15) benign(0.017) TCGA-AA-A010-01 3 12224872 12224872 G A SYN2 RNA 0.39 TCGA-AA-A010-01 3 122269466 122269466 A C PARP9 Missense_Mutation p.F466V 0.37 deleterious(0.02) benign(0.161) TCGA-AA-A010-01 3 122271289 122271289 C A PARP9 Missense_Mutation p.W396C 0.35 deleterious(0) benign(0.115) TCGA-AA-A010-01 3 122287978 122287978 G T DTX3L Missense_Mutation p.D348Y 0.42 deleterious(0.03) benign(0.02) TCGA-AA-A010-01 3 122353935 122353935 G T PARP15 Missense_Mutation p.K547N 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A010-01 3 122632717 122632717 C T SEMA5B Missense_Mutation p.S761N 0.37 tolerated(0.76) benign(0.142) TCGA-AA-A010-01 3 122634300 122634300 C T SEMA5B Missense_Mutation p.A713T 0.33 tolerated(0.52) possibly_damaging(0.908) TCGA-AA-A010-01 3 122634347 122634347 C T SEMA5B Missense_Mutation p.R697Q 0.40 tolerated(0.63) benign(0.005) TCGA-AA-A010-01 3 122928176 122928176 A T SEC22A Nonsense_Mutation p.K38* 0.39 TCGA-AA-A010-01 3 123009971 123009971 C A ADCY5 Missense_Mutation p.D1106Y 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 123367898 123367898 G A MYLK Silent p.P1445P 0.43 TCGA-AA-A010-01 3 123667598 123667598 T C CCDC14 Silent p.L215L 0.29 TCGA-AA-A010-01 3 123987841 123987841 G T KALRN Missense_Mutation p.K234N 0.36 deleterious(0.02) probably_damaging(0.982) TCGA-AA-A010-01 3 124453978 124453978 C T UMPS Silent p.G65G 0.41 TCGA-AA-A010-01 3 124483265 124483265 G A ITGB5 Silent p.S759S 0.35 TCGA-AA-A010-01 3 124592292 124592292 C T ITGB5 Splice_Site p.X52_splice 0.34 TCGA-AA-A010-01 3 124630963 124630963 C T MUC13 Missense_Mutation p.D413N 0.37 tolerated(0.72) benign(0.01) TCGA-AA-A010-01 3 124748130 124748130 G A HEG1 Silent p.S173S 0.34 TCGA-AA-A010-01 3 12544851 12544851 G A TSEN2 Silent p.T133T 0.35 TCGA-AA-A010-01 3 125647643 125647643 C A ALG1L 3'Flank 0.70 TCGA-AA-A010-01 3 125843233 125843233 C T ALDH1L1 Missense_Mutation p.G631D 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 125872310 125872310 G T ALDH1L1 Missense_Mutation p.L289I 0.43 tolerated_low_confidence(0.49) possibly_damaging(0.547) TCGA-AA-A010-01 3 126062510 126062510 A - KLF15 3'UTR 0.29 TCGA-AA-A010-01 3 126138962 126138962 G T CCDC37 Missense_Mutation p.K324N 0.43 tolerated(0.06) possibly_damaging(0.572) TCGA-AA-A010-01 3 126142170 126142170 C T CCDC37 Missense_Mutation p.S362L 0.45 tolerated(0.24) benign(0.015) TCGA-AA-A010-01 3 126219701 126219701 C T UROC1 Missense_Mutation p.E388K 0.50 tolerated(0.15) benign(0.043) TCGA-AA-A010-01 3 126255185 126255185 G T CHST13 Missense_Mutation p.D57Y 0.41 deleterious(0) probably_damaging(0.915) TCGA-AA-A010-01 3 126268717 126268717 G T C3orf22 Silent p.L140L 0.43 TCGA-AA-A010-01 3 126291151 126291151 G T TXNRD3NB Missense_Mutation p.S79Y 0.44 possibly_damaging(0.781) TCGA-AA-A010-01 3 126386156 126386156 C T NUP210P1 RNA 0.37 TCGA-AA-A010-01 3 126726748 126726748 G A PLXNA1 Missense_Mutation p.V702M 0.34 tolerated(0.34) benign(0.003) TCGA-AA-A010-01 3 1269521 1269521 G A CNTN6 Missense_Mutation p.D68N 0.26 tolerated(0.15) benign(0.195) TCGA-AA-A010-01 3 127396351 127396351 A T ABTB1 Missense_Mutation p.N269I 0.32 tolerated(0.19) benign(0.027) TCGA-AA-A010-01 3 127642002 127642002 T C KBTBD12 Missense_Mutation p.V33A 0.41 deleterious(0) possibly_damaging(0.868) TCGA-AA-A010-01 3 127642969 127642969 T A KBTBD12 Silent p.I355I 0.47 TCGA-AA-A010-01 3 127775644 127775644 A G SEC61A1 Missense_Mutation p.T105A 0.40 tolerated(0.22) benign(0.001) TCGA-AA-A010-01 3 127784081 127784081 A C SEC61A1 Intron 0.38 TCGA-AA-A010-01 3 127965852 127965852 A G EEFSEC Missense_Mutation p.T164A 0.40 tolerated(0.1) benign(0.021) TCGA-AA-A010-01 3 128181969 128181969 C A DNAJB8 Missense_Mutation p.E40D 0.33 tolerated(0.09) benign(0.038) TCGA-AA-A010-01 3 128182668 128182668 G T DNAJB8 5'UTR 0.38 TCGA-AA-A010-01 3 128292316 128292316 T C C3orf27 Missense_Mutation p.D86G 0.32 benign(0.008) TCGA-AA-A010-01 3 12858210 12858210 C A CAND2 Silent p.S593S 0.36 TCGA-AA-A010-01 3 128603576 128603576 C A ACAD9 Missense_Mutation p.F77L 0.36 deleterious(0.03) benign(0.25) TCGA-AA-A010-01 3 12869036 12869036 G T CAND2 Missense_Mutation p.G1103V 0.41 deleterious(0) possibly_damaging(0.794) TCGA-AA-A010-01 3 128707731 128707731 T C KIAA1257 Missense_Mutation p.E98G 0.34 deleterious(0) possibly_damaging(0.857) TCGA-AA-A010-01 3 12875564 12875564 T C CAND2 3'UTR 0.29 TCGA-AA-A010-01 3 129127618 129127618 C T EFCAB12 Silent p.P373P 0.34 TCGA-AA-A010-01 3 129156094 129156094 A G MBD4 Silent p.N131N 0.42 TCGA-AA-A010-01 3 129286546 129286546 C T PLXND1 Missense_Mutation p.R1323H 0.40 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 3 130098429 130098429 A C COL6A5 Missense_Mutation p.Y279S 0.31 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 3 130098445 130098445 G T COL6A5 Missense_Mutation p.K284N 0.09 tolerated(0.09) benign(0.033) TCGA-AA-A010-01 3 130107647 130107647 G A COL6A5 Missense_Mutation p.D696N 0.27 deleterious(0.03) benign(0.216) TCGA-AA-A010-01 3 130107755 130107755 C T COL6A5 Missense_Mutation p.L732F 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 130110412 130110412 A G COL6A5 Missense_Mutation p.D936G 0.34 tolerated(0.2) benign(0.013) TCGA-AA-A010-01 3 130113770 130113770 C T COL6A5 Silent p.C1010C 0.30 TCGA-AA-A010-01 3 130289886 130289886 C A COL6A6 Missense_Mutation p.L876I 0.45 tolerated(0.57) benign(0.143) TCGA-AA-A010-01 3 130427153 130427153 C T PIK3R4 Missense_Mutation p.E839K 0.36 tolerated(0.66) benign(0.034) TCGA-AA-A010-01 3 130437259 130437259 G T PIK3R4 Missense_Mutation p.P701T 0.38 deleterious(0.01) possibly_damaging(0.873) TCGA-AA-A010-01 3 130887692 130887692 G T NEK11 Nonsense_Mutation p.G399* 0.42 TCGA-AA-A010-01 3 131254061 131254061 G T CPNE4 Missense_Mutation p.S551Y 0.38 deleterious(0.02) probably_damaging(0.986) TCGA-AA-A010-01 3 132166294 132166294 G A DNAJC13 Missense_Mutation p.E92K 0.38 tolerated(0.07) benign(0.103) TCGA-AA-A010-01 3 132218131 132218131 C T DNAJC13 Missense_Mutation p.L1440F 0.41 deleterious(0) possibly_damaging(0.803) TCGA-AA-A010-01 3 132411590 132411590 A C NPHP3 Missense_Mutation p.S795A 0.35 tolerated(0.14) benign(0.024) TCGA-AA-A010-01 3 133467337 133467337 G A TF Missense_Mutation p.R42H 0.33 tolerated(0.11) benign(0.125) TCGA-AA-A010-01 3 133670122 133670122 G T SLCO2A1 Missense_Mutation p.S264Y 0.34 deleterious(0) possibly_damaging(0.866) TCGA-AA-A010-01 3 1337291 1337291 C A CNTN6 Missense_Mutation p.S154Y 0.45 tolerated(0.35) benign(0.019) TCGA-AA-A010-01 3 13381747 13381747 C T NUP210 Missense_Mutation p.A1094T 0.33 tolerated(0.12) probably_damaging(0.992) TCGA-AA-A010-01 3 134280383 134280384 - A CEP63 3'UTR 0.38 TCGA-AA-A010-01 3 136240171 136240171 C T STAG1 Missense_Mutation p.R187Q 0.35 tolerated(0.34) benign(0.107) TCGA-AA-A010-01 3 1371531 1371531 G A CNTN6 Missense_Mutation p.D426N 0.37 tolerated(0.1) benign(0.011) TCGA-AA-A010-01 3 137729212 137729212 C T CLDN18 Missense_Mutation p.L49F 0.43 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 137813813 137813813 T A DZIP1L Missense_Mutation p.K200I 0.36 deleterious(0) possibly_damaging(0.723) TCGA-AA-A010-01 3 137881411 137881411 C T DBR1 Missense_Mutation p.A319T 0.34 tolerated(0.26) benign(0.062) TCGA-AA-A010-01 3 137953878 137953878 G A ARMC8 Silent p.G163G 0.31 TCGA-AA-A010-01 3 138289960 138289960 C T CEP70 Missense_Mutation p.R67K 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 3 138665863 138665863 T C FOXL2 5'UTR 0.45 TCGA-AA-A010-01 3 138739028 138739028 G A PRR23B Missense_Mutation p.A159V 0.37 tolerated(0.15) possibly_damaging(0.889) TCGA-AA-A010-01 3 139071590 139071591 - A MRPS22 Frame_Shift_Ins p.I281Dfs*2 0.24 TCGA-AA-A010-01 3 139093358 139093358 G A COPB2 Missense_Mutation p.P242S 0.42 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 3 139181100 139181100 G A RBP2 Missense_Mutation p.R36C 0.37 tolerated(0.06) benign(0.005) TCGA-AA-A010-01 3 140277598 140277598 C A CLSTN2 Missense_Mutation p.A647D 0.35 deleterious(0) possibly_damaging(0.615) TCGA-AA-A010-01 3 141163257 141163257 C A ZBTB38 Missense_Mutation p.S676Y 0.32 deleterious(0.01) possibly_damaging(0.624) TCGA-AA-A010-01 3 141305533 141305533 G T RASA2 Missense_Mutation p.K624N 0.31 deleterious(0) probably_damaging(0.918) TCGA-AA-A010-01 3 141693008 141693008 C T TFDP2 Missense_Mutation p.R182Q 0.32 deleterious(0) possibly_damaging(0.811) TCGA-AA-A010-01 3 142139906 142139906 A C XRN1 Silent p.G375G 0.31 TCGA-AA-A010-01 3 142145605 142145605 A C XRN1 Missense_Mutation p.D129E 0.40 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 3 142231148 142231148 C A ATR Missense_Mutation p.E1602D 0.35 tolerated(0.32) benign(0.001) TCGA-AA-A010-01 3 142281714 142281714 C T ATR Missense_Mutation p.R177Q 0.40 tolerated_low_confidence(0.07) benign(0.192) TCGA-AA-A010-01 3 142284984 142284984 C A ATR Nonsense_Mutation p.E91* 0.37 TCGA-AA-A010-01 3 142509908 142509908 G T TRPC1 Missense_Mutation p.D449Y 0.41 deleterious(0) possibly_damaging(0.903) TCGA-AA-A010-01 3 142522907 142522907 G T TRPC1 Nonsense_Mutation p.E616* 0.38 TCGA-AA-A010-01 3 142548642 142548642 C A PCOLCE2 Missense_Mutation p.D253Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 3 142606613 142606613 A C PCOLCE2 Silent p.V30V 0.33 TCGA-AA-A010-01 3 142987796 142987796 G T SLC9A9 Missense_Mutation p.S544Y 0.32 deleterious(0) benign(0.261) TCGA-AA-A010-01 3 143691301 143691301 G T C3orf58 Nonsense_Mutation p.E43* 0.47 TCGA-AA-A010-01 3 1445120 1445120 C A CNTN6 3'UTR 0.59 TCGA-AA-A010-01 3 1445135 1445135 G A CNTN6 3'UTR 0.17 TCGA-AA-A010-01 3 14555201 14555201 G A GRIP2 RNA 0.35 TCGA-AA-A010-01 3 146167085 146167085 C T PLSCR2 Missense_Mutation p.A258T 0.39 tolerated(0.2) benign(0.126) TCGA-AA-A010-01 3 14709010 14709010 G T CCDC174 Missense_Mutation p.E268D 0.34 tolerated(1) possibly_damaging(0.458) TCGA-AA-A010-01 3 147108811 147108811 G A ZIC4 Missense_Mutation p.S354F 0.44 tolerated(0.2) probably_damaging(0.974) TCGA-AA-A010-01 3 147108958 147108958 G A ZIC4 Missense_Mutation p.S305L 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-AA-A010-01 3 147128870 147128870 G T ZIC1 Missense_Mutation p.R324M 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 3 14745900 14745900 G A C3orf20 Missense_Mutation p.R312Q 0.32 tolerated(0.06) probably_damaging(0.989) TCGA-AA-A010-01 3 14798948 14798948 C T C3orf20 Missense_Mutation p.R671W 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 148459849 148459849 G T AGTR1 Missense_Mutation p.D343Y 0.37 deleterious(0.03) benign(0.255) TCGA-AA-A010-01 3 148577821 148577821 C A CPB1 3'UTR 0.35 TCGA-AA-A010-01 3 14861807 14861807 C T FGD5 Missense_Mutation p.A410V 0.44 tolerated_low_confidence(1) benign(0) TCGA-AA-A010-01 3 14862671 14862671 G T FGD5 Missense_Mutation p.R698I 0.46 deleterious(0) possibly_damaging(0.794) TCGA-AA-A010-01 3 148756855 148756855 C T HLTF Missense_Mutation p.R926Q 0.31 deleterious(0.03) possibly_damaging(0.826) TCGA-AA-A010-01 3 148759356 148759356 G T HLTF Missense_Mutation p.S766Y 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 149087730 149087730 C A TM4SF1 Intron 0.29 TCGA-AA-A010-01 3 14939527 14939527 C T FGD5 Silent p.F997F 0.32 TCGA-AA-A010-01 3 149459469 149459469 C T COMMD2 Missense_Mutation p.A147T 0.32 tolerated(0.44) benign(0.002) TCGA-AA-A010-01 3 149510198 149510198 G T ANKUB1 5'UTR 0.40 TCGA-AA-A010-01 3 150127374 150127374 G T TSC22D2 Missense_Mutation p.E79D 0.22 tolerated(0.06) possibly_damaging(0.885) TCGA-AA-A010-01 3 150176520 150176520 C T TSC22D2 3'UTR 0.48 TCGA-AA-A010-01 3 150289802 150289802 C T EIF2A Missense_Mutation p.A290V 0.33 tolerated(1) benign(0.003) TCGA-AA-A010-01 3 150377687 150377687 C A FAM194A Nonsense_Mutation p.E662* 0.28 TCGA-AA-A010-01 3 150459937 150459937 A C SIAH2 Missense_Mutation p.C322W 0.34 deleterious_low_confidence(0) benign(0.099) TCGA-AA-A010-01 3 150877856 150877856 C T MED12L Missense_Mutation p.P359S 0.29 tolerated(0.3) probably_damaging(0.999) TCGA-AA-A010-01 3 150917010 150917010 T G GPR171 Missense_Mutation p.N55T 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 3 151163824 151163824 T G IGSF10 Missense_Mutation p.Q1315H 0.34 tolerated(0.1) benign(0.015) TCGA-AA-A010-01 3 152173347 152173347 G T MBNL1 Intron 0.33 TCGA-AA-A010-01 3 153202469 153202469 C A C3orf79 Missense_Mutation p.L42I 0.39 tolerated_low_confidence(0.18) benign(0.01) TCGA-AA-A010-01 3 153203864 153203864 G T C3orf79 Missense_Mutation p.D65Y 0.35 deleterious_low_confidence(0.02) probably_damaging(0.934) TCGA-AA-A010-01 3 153973184 153973184 G T ARHGEF26 Missense_Mutation p.K846N 0.39 deleterious(0.04) benign(0.028) TCGA-AA-A010-01 3 153973370 153973370 G T ARHGEF26 3'UTR 0.35 TCGA-AA-A010-01 3 15452930 15452930 G T METTL6 Missense_Mutation p.L230I 0.45 tolerated(0.1) possibly_damaging(0.562) TCGA-AA-A010-01 3 15455573 15455573 A C METTL6 Missense_Mutation p.F210V 0.43 deleterious(0) possibly_damaging(0.735) TCGA-AA-A010-01 3 15466510 15466510 G T METTL6 Silent p.I104I 0.41 TCGA-AA-A010-01 3 15467851 15467851 G T METTL6 Missense_Mutation p.F56L 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 3 154860055 154860055 T G MME Missense_Mutation p.F375C 0.33 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 3 154898302 154898302 G T MME 3'UTR 0.29 TCGA-AA-A010-01 3 155208600 155208600 C A PLCH1 Missense_Mutation p.D777Y 0.33 deleterious(0.03) probably_damaging(0.988) TCGA-AA-A010-01 3 15520860 15520860 T C COLQ Silent p.G117G 0.43 TCGA-AA-A010-01 3 155393874 155393874 C T PLCH1 5'Flank 0.35 TCGA-AA-A010-01 3 155560338 155560338 G A SLC33A1 Silent p.N282N 0.24 TCGA-AA-A010-01 3 155628648 155628648 G T GMPS Nonsense_Mutation p.E232* 0.32 TCGA-AA-A010-01 3 156232161 156232161 C T KCNAB1 Nonsense_Mutation p.R223* 0.37 TCGA-AA-A010-01 3 156413784 156413784 G A TIPARP Missense_Mutation p.R406H 0.47 tolerated(0.09) benign(0.091) TCGA-AA-A010-01 3 156745944 156745944 C A LEKR1 Missense_Mutation p.T474N 0.41 tolerated(0.31) benign(0.005) TCGA-AA-A010-01 3 156867943 156867943 G A CCNL1 Missense_Mutation p.R264C 0.32 deleterious(0) probably_damaging(0.925) TCGA-AA-A010-01 3 156870927 156870927 G A CCNL1 Silent p.I169I 0.32 TCGA-AA-A010-01 3 156877763 156877763 G T CCNL1 Missense_Mutation p.L41M 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-AA-A010-01 3 15711945 15711945 A C ANKRD28 Missense_Mutation p.N998K 0.33 tolerated(0.55) benign(0.063) TCGA-AA-A010-01 3 157146120 157146120 T A VEPH1 Missense_Mutation p.K229N 0.32 tolerated(0.09) benign(0.008) TCGA-AA-A010-01 3 157177895 157177895 A C VEPH1 Intron 0.40 TCGA-AA-A010-01 3 158369992 158369992 A G GFM1 Missense_Mutation p.E266G 0.30 deleterious(0) probably_damaging(0.916) TCGA-AA-A010-01 3 158415452 158415452 G T RARRES1 3'UTR 0.23 TCGA-AA-A010-01 3 159584059 159584059 C A IQCJ-SCHIP1 Missense_Mutation p.S365R 0.38 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A010-01 3 160102262 160102262 T G IFT80 Intron 0.41 TCGA-AA-A010-01 3 160122245 160122245 C T SMC4 Nonsense_Mutation p.R214* 0.39 TCGA-AA-A010-01 3 160148418 160148418 C T SMC4 Missense_Mutation p.R943C 0.35 tolerated(0.1) benign(0.008) TCGA-AA-A010-01 3 160955951 160955951 G A NMD3 Missense_Mutation p.E210K 0.42 deleterious(0) possibly_damaging(0.456) TCGA-AA-A010-01 3 161217030 161217030 G T OTOL1 Missense_Mutation p.G146C 0.28 deleterious(0) unknown(0) TCGA-AA-A010-01 3 16216750 16216750 C T GALNT15 Missense_Mutation p.A31V 0.42 tolerated_low_confidence(0.09) benign(0.005) TCGA-AA-A010-01 3 16302058 16302058 G A DPH3 3'UTR 0.21 TCGA-AA-A010-01 3 16305671 16305671 A T DPH3 Silent p.I58I 0.36 TCGA-AA-A010-01 3 16306315 16306315 G T DPH3 Missense_Mutation p.F23L 0.41 tolerated(0.23) benign(0.099) TCGA-AA-A010-01 3 164714403 164714403 C A SI Nonsense_Mutation p.E1538* 0.32 TCGA-AA-A010-01 3 164777045 164777045 C A SI Missense_Mutation p.D397Y 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 164907726 164907726 G A SLITRK3 Missense_Mutation p.S298L 0.38 tolerated(0.34) benign(0) TCGA-AA-A010-01 3 164908602 164908602 G A SLITRK3 Missense_Mutation p.A6V 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-AA-A010-01 3 16636041 16636041 G A DAZL Missense_Mutation p.P227L 0.49 tolerated(0.22) benign(0.009) TCGA-AA-A010-01 3 167000064 167000064 T C ZBBX Missense_Mutation p.N739S 0.29 tolerated(1) benign(0.001) TCGA-AA-A010-01 3 167016185 167016185 C A ZBBX Missense_Mutation p.R596I 0.26 tolerated(0.06) benign(0.187) TCGA-AA-A010-01 3 167045739 167045739 C T ZBBX Missense_Mutation p.A285T 0.26 tolerated(0.09) benign(0.238) TCGA-AA-A010-01 3 167246966 167246966 C A WDR49 Missense_Mutation p.K408N 0.45 tolerated(0.07) benign(0.035) TCGA-AA-A010-01 3 167728167 167728167 G A GOLIM4 Nonsense_Mutation p.R661* 0.38 TCGA-AA-A010-01 3 167761251 167761251 C A GOLIM4 Missense_Mutation p.D145Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 3 167764756 167764756 T G GOLIM4 Missense_Mutation p.E98D 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A010-01 3 168833870 168833870 G A MECOM Missense_Mutation p.S474L 0.36 deleterious(0.01) possibly_damaging(0.86) TCGA-AA-A010-01 3 168834210 168834210 C T MECOM Missense_Mutation p.A361T 0.43 tolerated(0.3) probably_damaging(0.999) TCGA-AA-A010-01 3 169381231 169381231 C T MECOM 5'UTR 0.41 TCGA-AA-A010-01 3 169485373 169485373 G A ACTRT3 Silent p.T322T 0.35 TCGA-AA-A010-01 3 169521851 169521851 T C LRRC34 Missense_Mutation p.D216G 0.37 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 3 169546595 169546595 A C LRRIQ4 Missense_Mutation p.T357P 0.35 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 3 169555317 169555317 C T LRRIQ4 Silent p.F527F 0.33 TCGA-AA-A010-01 3 169644589 169644589 G T SAMD7 Missense_Mutation p.R180I 0.36 deleterious(0) benign(0.26) TCGA-AA-A010-01 3 169644770 169644770 G A SAMD7 Silent p.T240T 0.37 TCGA-AA-A010-01 3 169998141 169998141 C T PRKCI Missense_Mutation p.R278C 0.40 tolerated(0.12) probably_damaging(0.997) TCGA-AA-A010-01 3 17052530 17052530 A C PLCL2 Missense_Mutation p.K438N 0.08 deleterious(0) probably_damaging(0.944) TCGA-AA-A010-01 3 170584128 170584128 T C RPL22L1 3'UTR 0.44 TCGA-AA-A010-01 3 170584225 170584225 C T RPL22L1 Missense_Mutation p.E105K 0.35 tolerated(0.13) benign(0.148) TCGA-AA-A010-01 3 170781735 170781735 G A TNIK Nonsense_Mutation p.R1340* 0.38 TCGA-AA-A010-01 3 170784019 170784019 T G TNIK Missense_Mutation p.K1319T 0.46 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 3 170784072 170784072 A T TNIK Silent p.A1301A 0.34 TCGA-AA-A010-01 3 170802056 170802056 C A TNIK Missense_Mutation p.K1019N 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A010-01 3 170884890 170884890 C A TNIK Nonsense_Mutation p.E315* 0.33 TCGA-AA-A010-01 3 172835114 172835114 G A SPATA16 Silent p.R136R 0.43 TCGA-AA-A010-01 3 173322771 173322771 A C NLGN1 Missense_Mutation p.E128A 0.26 tolerated(0.23) benign(0.042) TCGA-AA-A010-01 3 173999177 173999177 T G NLGN1 3'UTR 0.32 TCGA-AA-A010-01 3 176768315 176768315 C T TBL1XR1 Missense_Mutation p.E171K 0.29 deleterious(0) probably_damaging(0.952) TCGA-AA-A010-01 3 178937367 178937367 C T PIK3CA Silent p.C585C 0.20 TCGA-AA-A010-01 3 178942523 178942523 G T PIK3CA Missense_Mutation p.R777M 0.26 deleterious(0) probably_damaging(0.959) TCGA-AA-A010-01 3 179320486 179320486 T G MRPL47 Missense_Mutation p.E66D 0.31 tolerated(0.1) possibly_damaging(0.558) TCGA-AA-A010-01 3 179408031 179408031 G T USP13 Missense_Mutation p.K99N 0.42 tolerated(0.12) benign(0.206) TCGA-AA-A010-01 3 180321070 180321070 G T TTC14 Nonsense_Mutation p.G149* 0.37 TCGA-AA-A010-01 3 180337133 180337133 T - CCDC39 Frame_Shift_Del p.I727Ffs*3 0.28 TCGA-AA-A010-01 3 180364983 180364983 C T CCDC39 Missense_Mutation p.E471K 0.38 deleterious(0.04) benign(0.192) TCGA-AA-A010-01 3 180377338 180377338 G A CCDC39 Missense_Mutation p.R214C 0.38 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 3 180702401 180702401 G A DNAJC19 3'UTR 0.06 TCGA-AA-A010-01 3 181431327 181431327 T G SOX2 3'UTR 0.33 TCGA-AA-A010-01 3 182756918 182756918 C T MCCC1 Missense_Mutation p.E425K 0.41 deleterious(0.01) possibly_damaging(0.871) TCGA-AA-A010-01 3 182990237 182990237 C A MCF2L2 Intron 0.31 TCGA-AA-A010-01 3 183217608 183217608 G A KLHL6 Missense_Mutation p.S306L 0.33 deleterious(0) benign(0.163) TCGA-AA-A010-01 3 183439812 183439812 C A YEATS2 Missense_Mutation p.S142Y 0.39 deleterious(0.01) possibly_damaging(0.474) TCGA-AA-A010-01 3 183521882 183521882 C T YEATS2 Silent p.C1230C 0.35 TCGA-AA-A010-01 3 183547307 183547307 C T PARL 3'UTR 0.37 TCGA-AA-A010-01 3 183547473 183547473 T C PARL Silent p.E351E 0.39 TCGA-AA-A010-01 3 183756057 183756057 G T HTR3D Intron 0.36 TCGA-AA-A010-01 3 183774074 183774074 C T HTR3C Missense_Mutation p.S130F 0.36 tolerated(1) benign(0.031) TCGA-AA-A010-01 3 183778126 183778126 C A HTR3C Missense_Mutation p.L444I 0.41 tolerated(0.07) probably_damaging(0.999) TCGA-AA-A010-01 3 183855762 183855762 C T EIF2B5 Missense_Mutation p.R195C 0.53 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 3 183952518 183952518 G A VWA5B2 Missense_Mutation p.R307Q 0.38 deleterious(0.04) benign(0.077) TCGA-AA-A010-01 3 183959600 183959600 C T VWA5B2 Missense_Mutation p.A1168V 0.57 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 183967585 183967585 G A ECE2 Missense_Mutation p.D35N 0.37 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-AA-A010-01 3 184040693 184040693 T C EIF4G1 Missense_Mutation p.M634T 0.35 tolerated(0.12) benign(0.008) TCGA-AA-A010-01 3 184044740 184044740 G T EIF4G1 Nonsense_Mutation p.E1140* 0.36 TCGA-AA-A010-01 3 184045126 184045126 G A EIF4G1 Missense_Mutation p.R1191Q 0.35 tolerated(0.08) benign(0.339) TCGA-AA-A010-01 3 184072361 184072361 A G CLCN2 Silent p.I494I 0.39 TCGA-AA-A010-01 3 184081191 184081191 C A POLR2H 5'UTR 0.41 TCGA-AA-A010-01 3 184090106 184090106 C T THPO 3'UTR 0.44 TCGA-AA-A010-01 3 184090805 184090805 G T THPO Silent p.T186T 0.37 TCGA-AA-A010-01 3 184102959 184102959 C T CHRD Missense_Mutation p.A584V 0.36 deleterious(0.05) benign(0.318) TCGA-AA-A010-01 3 184106750 184106750 C T CHRD Nonsense_Mutation p.R927* 0.33 TCGA-AA-A010-01 3 18436062 18436062 C T SATB1 Silent p.S366S 0.38 TCGA-AA-A010-01 3 184588555 184588555 G T VPS8 Missense_Mutation p.D566Y 0.39 deleterious(0) benign(0.281) TCGA-AA-A010-01 3 184616422 184616422 G T VPS8 Nonsense_Mutation p.E692* 0.32 TCGA-AA-A010-01 3 184922411 184922411 G A EHHADH Missense_Mutation p.R235C 0.31 deleterious(0) probably_damaging(0.914) TCGA-AA-A010-01 3 185181425 185181425 C T MAP3K13 Nonsense_Mutation p.R456* 0.37 TCGA-AA-A010-01 3 185232207 185232207 T G LIPH Missense_Mutation p.K362T 0.36 tolerated(0.32) benign(0.009) TCGA-AA-A010-01 3 185252727 185252727 T C LIPH Silent p.T81T 0.39 TCGA-AA-A010-01 3 185332508 185332508 G A SENP2 Missense_Mutation p.D364N 0.37 tolerated(0.5) probably_damaging(0.998) TCGA-AA-A010-01 3 185337160 185337160 G A SENP2 Missense_Mutation p.S439N 0.40 tolerated(0.08) possibly_damaging(0.833) TCGA-AA-A010-01 3 185337187 185337187 C A SENP2 Missense_Mutation p.S448Y 0.36 deleterious(0) probably_damaging(0.948) TCGA-AA-A010-01 3 185367284 185367284 G T IGF2BP2 Missense_Mutation p.N500K 0.38 deleterious(0.03) probably_damaging(0.996) TCGA-AA-A010-01 3 185823136 185823136 G A ETV5 Missense_Mutation p.P64S 0.30 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 3 186274304 186274304 G T TBCCD1 Missense_Mutation p.F251L 0.38 tolerated(0.05) benign(0.242) TCGA-AA-A010-01 3 186394906 186394906 C A HRG Missense_Mutation p.S271Y 0.29 tolerated(0.47) possibly_damaging(0.608) TCGA-AA-A010-01 3 186395078 186395078 A G HRG Silent p.Q328Q 0.36 TCGA-AA-A010-01 3 186460082 186460082 G T KNG1 Nonsense_Mutation p.E633* 0.33 TCGA-AA-A010-01 3 186508045 186508045 C A RFC4 Splice_Site p.X295_splice 0.29 TCGA-AA-A010-01 3 186512483 186512483 T G RFC4 Missense_Mutation p.N125T 0.38 tolerated(0.62) benign(0.001) TCGA-AA-A010-01 3 186937986 186937986 C G MASP1 Missense_Mutation p.G658A 0.43 tolerated(0.46) benign(0.019) TCGA-AA-A010-01 3 187388082 187388082 C T SST 5'UTR 0.37 TCGA-AA-A010-01 3 189612028 189612028 C T TP63 Nonsense_Mutation p.R594* 0.37 TCGA-AA-A010-01 3 189690782 189690782 C A LEPREL1 Missense_Mutation p.S527I 0.38 deleterious(0) possibly_damaging(0.615) TCGA-AA-A010-01 3 190126202 190126202 A C CLDN16 Missense_Mutation p.K231T 0.36 deleterious(0.01) probably_damaging(0.95) TCGA-AA-A010-01 3 192125840 192125840 C T FGF12 Missense_Mutation p.R58H 0.38 deleterious(0) possibly_damaging(0.587) TCGA-AA-A010-01 3 192516125 192516125 G A MB21D2 3'UTR 0.41 TCGA-AA-A010-01 3 192516962 192516962 C T MB21D2 Missense_Mutation p.R230H 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A010-01 3 193031825 193031825 C A ATP13A5 Missense_Mutation p.K772N 0.29 tolerated(0.47) benign(0.022) TCGA-AA-A010-01 3 193180591 193180591 C T ATP13A4 Missense_Mutation p.G495S 0.36 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 3 193182796 193182796 C T ATP13A4 Missense_Mutation p.G465D 0.48 deleterious(0.01) possibly_damaging(0.649) TCGA-AA-A010-01 3 193272538 193272538 C A ATP13A4 Missense_Mutation p.E17D 0.31 tolerated(0.15) benign(0.009) TCGA-AA-A010-01 3 194117314 194117314 G T GP5 3'UTR 0.41 TCGA-AA-A010-01 3 194408339 194408339 C T FAM43A Silent p.L262L 0.43 TCGA-AA-A010-01 3 194409686 194409686 T G FAM43A 3'UTR 0.35 TCGA-AA-A010-01 3 194877219 194877219 G A XXYLT1 Silent p.G248G 0.36 TCGA-AA-A010-01 3 195102672 195102672 C T ACAP2 Missense_Mutation p.R64Q 0.37 tolerated(0.17) benign(0.111) TCGA-AA-A010-01 3 195390964 195390964 A T SDHAP2 RNA 0.09 TCGA-AA-A010-01 3 195452642 195452642 G A MUC20 Missense_Mutation p.D390N 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-AA-A010-01 3 195487754 195487754 C A MUC4 Splice_Site p.X4950_splice 0.38 TCGA-AA-A010-01 3 195510964 195510964 C T MUC4 Missense_Mutation p.R2496H 0.39 possibly_damaging(0.831) TCGA-AA-A010-01 3 195517493 195517493 C A MUC4 Missense_Mutation p.A320S 0.40 unknown(0) TCGA-AA-A010-01 3 195518250 195518250 A G MUC4 Silent p.N67N 0.17 TCGA-AA-A010-01 3 19551879 19551879 T C KCNH8 Missense_Mutation p.S689P 0.30 tolerated(0.73) benign(0.001) TCGA-AA-A010-01 3 195698277 195698277 C A SDHAP1 RNA 0.18 TCGA-AA-A010-01 3 195711140 195711140 T A SDHAP1 RNA 0.15 TCGA-AA-A010-01 3 19575144 19575144 G T KCNH8 Missense_Mutation p.W959C 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.863) TCGA-AA-A010-01 3 195778839 195778839 C T TFRC Missense_Mutation p.V753I 0.40 tolerated(1) benign(0) TCGA-AA-A010-01 3 196051443 196051443 C A TM4SF19 Intron 0.30 TCGA-AA-A010-01 3 196311014 196311014 G T FBXO45 Missense_Mutation p.R229I 0.38 deleterious(0) possibly_damaging(0.893) TCGA-AA-A010-01 3 196387111 196387111 C T NRROS Silent p.G199G 0.47 TCGA-AA-A010-01 3 196387932 196387932 G T NRROS Missense_Mutation p.G473V 0.37 deleterious(0) probably_damaging(0.94) TCGA-AA-A010-01 3 196449287 196449287 G T PIGX Missense_Mutation p.D60Y 0.35 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 3 196613266 196613266 C A SENP5 Missense_Mutation p.S405Y 0.39 deleterious(0.01) benign(0.11) TCGA-AA-A010-01 3 196748335 196748335 C A MFI2 Missense_Mutation p.A218S 0.37 deleterious(0.02) possibly_damaging(0.707) TCGA-AA-A010-01 3 196749976 196749976 C T MFI2 Missense_Mutation p.D166N 0.43 tolerated(0.93) benign(0.006) TCGA-AA-A010-01 3 197785790 197785790 A C ANKRD18DP RNA 0.29 TCGA-AA-A010-01 3 19920980 19920980 C A EFHB 3'UTR 0.33 TCGA-AA-A010-01 3 19924071 19924071 C A EFHB Missense_Mutation p.D767Y 0.38 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 3 19924193 19924193 C T EFHB Missense_Mutation p.R726Q 0.36 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 3 19947146 19947146 C T EFHB Missense_Mutation p.A462T 0.36 deleterious(0.01) possibly_damaging(0.627) TCGA-AA-A010-01 3 19975376 19975376 C T EFHB Silent p.E45E 0.40 TCGA-AA-A010-01 3 19975515 19975515 G A EFHB 5'UTR 0.43 TCGA-AA-A010-01 3 21462821 21462821 C T ZNF385D Missense_Mutation p.R358Q 0.37 deleterious(0.02) possibly_damaging(0.885) TCGA-AA-A010-01 3 21792454 21792454 C A ZNF385D 5'UTR 0.34 TCGA-AA-A010-01 3 23932084 23932084 G T UBE2E1 Missense_Mutation p.R190I 0.31 deleterious(0) possibly_damaging(0.841) TCGA-AA-A010-01 3 24164413 24164413 G T THRB Missense_Mutation p.L450I 0.34 tolerated(0.22) benign(0.12) TCGA-AA-A010-01 3 25542696 25542696 G T RARB Missense_Mutation p.Q110H 0.41 deleterious(0) benign(0.002) TCGA-AA-A010-01 3 25662290 25662290 G C TOP2B Missense_Mutation p.N910K 0.37 deleterious(0.02) benign(0.098) TCGA-AA-A010-01 3 25835994 25835994 A C OXSM 3'UTR 0.41 TCGA-AA-A010-01 3 27152782 27152782 T A NEK10 Missense_Mutation p.N1167I 0.36 deleterious_low_confidence(0) benign(0.051) TCGA-AA-A010-01 3 27427493 27427493 G A SLC4A7 Missense_Mutation p.R1119C 0.35 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 3 27451005 27451005 T G SLC4A7 Missense_Mutation p.I586L 0.35 tolerated(0.07) benign(0.035) TCGA-AA-A010-01 3 27478988 27478988 G T SLC4A7 Missense_Mutation p.L98I 0.48 deleterious(0.01) benign(0.141) TCGA-AA-A010-01 3 27758495 27758495 A G EOMES 3'UTR 0.44 TCGA-AA-A010-01 3 27758824 27758824 A C EOMES Missense_Mutation p.F600V 0.37 tolerated(0.44) possibly_damaging(0.873) TCGA-AA-A010-01 3 27760256 27760256 G T EOMES Missense_Mutation p.F429L 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 3 28357880 28357880 G T CMC1 Nonsense_Mutation p.E56* 0.34 TCGA-AA-A010-01 3 28533622 28533622 A C ZCWPW2 Missense_Mutation p.K205N 0.29 deleterious(0.01) possibly_damaging(0.642) TCGA-AA-A010-01 3 2928808 2928808 T A CNTN4 Silent p.L280L 0.33 TCGA-AA-A010-01 3 29781260 29781260 C A RBMS3 Missense_Mutation p.S150Y 0.29 tolerated(0.13) probably_damaging(0.999) TCGA-AA-A010-01 3 30686246 30686246 C T TGFBR2 Silent p.N59N 0.35 TCGA-AA-A010-01 3 30729968 30729968 C T TGFBR2 Nonsense_Mutation p.R522* 0.78 TCGA-AA-A010-01 3 3085370 3085370 G A CNTN4 Silent p.S931S 0.34 TCGA-AA-A010-01 3 3097837 3097837 C T CNTN4 Missense_Mutation p.S1005L 0.38 tolerated(0.37) unknown(0) TCGA-AA-A010-01 3 3137061 3137061 C A IL5RA Missense_Mutation p.E259D 0.34 deleterious(0.05) benign(0.029) TCGA-AA-A010-01 3 3139831 3139831 G T IL5RA Missense_Mutation p.L171I 0.42 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 3 31666425 31666425 G T STT3B Missense_Mutation p.D583Y 0.46 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 31725315 31725315 C T OSBPL10 Missense_Mutation p.E513K 0.33 tolerated(0.37) benign(0.009) TCGA-AA-A010-01 3 3179132 3179132 G A TRNT1 Missense_Mutation p.A113T 0.34 deleterious(0.03) benign(0.399) TCGA-AA-A010-01 3 3189273 3189273 G A TRNT1 Silent p.K314K 0.35 TCGA-AA-A010-01 3 32031202 32031202 T G ZNF860 Missense_Mutation p.F211V 0.41 deleterious(0.03) possibly_damaging(0.683) TCGA-AA-A010-01 3 32148237 32148237 G A GPD1L Missense_Mutation p.G12S 0.47 deleterious(0.01) benign(0.15) TCGA-AA-A010-01 3 32568107 32568107 A C DYNC1LI1 3'UTR 0.67 TCGA-AA-A010-01 3 32576106 32576106 C A DYNC1LI1 Nonsense_Mutation p.E289* 0.42 TCGA-AA-A010-01 3 32761630 32761630 A C CNOT10 Missense_Mutation p.S317R 0.37 deleterious(0.01) possibly_damaging(0.812) TCGA-AA-A010-01 3 33255487 33255487 G A SUSD5 Missense_Mutation p.R75W 0.40 deleterious(0) probably_damaging(0.965) TCGA-AA-A010-01 3 33255515 33255515 G A SUSD5 Silent p.G65G 0.42 TCGA-AA-A010-01 3 33450180 33450180 A G UBP1 Splice_Site p.X309_splice 0.41 TCGA-AA-A010-01 3 33644395 33644395 G A CLASP2 Intron 0.16 TCGA-AA-A010-01 3 35833908 35833908 C T ARPP21 Silent p.F690F 0.49 TCGA-AA-A010-01 3 35834008 35834008 A C ARPP21 Missense_Mutation p.M724L 0.37 tolerated(0.37) benign(0.006) TCGA-AA-A010-01 3 36756770 36756770 C A DCLK3 3'UTR 0.42 TCGA-AA-A010-01 3 36869690 36869690 C A TRANK1 3'UTR 0.27 TCGA-AA-A010-01 3 36872837 36872837 C T TRANK1 Missense_Mutation p.R2702H 0.37 tolerated(0.58) benign(0) TCGA-AA-A010-01 3 36874434 36874434 G A TRANK1 Missense_Mutation p.R2170W 0.34 deleterious(0.02) possibly_damaging(0.696) TCGA-AA-A010-01 3 37107771 37107771 G A LRRFIP2 Nonsense_Mutation p.R504* 0.34 TCGA-AA-A010-01 3 37368058 37368058 G T GOLGA4 Nonsense_Mutation p.E1583* 0.44 TCGA-AA-A010-01 3 37368975 37368975 G T GOLGA4 Missense_Mutation p.Q1888H 0.29 benign(0.382) TCGA-AA-A010-01 3 38039166 38039166 C T VILL Missense_Mutation p.R252C 0.52 deleterious(0) probably_damaging(0.931) TCGA-AA-A010-01 3 38044718 38044718 G T VILL Missense_Mutation p.K573N 0.42 tolerated(0.6) benign(0.005) TCGA-AA-A010-01 3 38050035 38050035 C T PLCD1 Missense_Mutation p.A627T 0.37 tolerated(0.52) benign(0.016) TCGA-AA-A010-01 3 38050848 38050848 G T PLCD1 Missense_Mutation p.F528L 0.27 tolerated(0.2) possibly_damaging(0.834) TCGA-AA-A010-01 3 38080951 38080951 C T DLEC1 Silent p.L79L 0.46 TCGA-AA-A010-01 3 38153807 38153807 C T DLEC1 Silent p.G1207G 0.41 TCGA-AA-A010-01 3 38159469 38159469 C T DLEC1 Missense_Mutation p.A1553V 0.38 tolerated(0.18) benign(0.005) TCGA-AA-A010-01 3 38291457 38291457 G A OXSR1 Silent p.R441R 0.37 TCGA-AA-A010-01 3 38523772 38523772 G T ACVR2B Missense_Mutation p.M386I 0.48 deleterious(0.03) benign(0.227) TCGA-AA-A010-01 3 38597975 38597975 A C SCN5A Missense_Mutation p.F1465C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 3 38674697 38674697 G A SCN5A Silent p.R34R 0.49 TCGA-AA-A010-01 3 38755504 38755504 C T SCN10A Missense_Mutation p.R1250Q 0.43 deleterious(0.01) probably_damaging(0.92) TCGA-AA-A010-01 3 38812792 38812792 C A SCN10A Missense_Mutation p.D193Y 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 38888499 38888499 C T SCN11A Missense_Mutation p.A1688T 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 3 39159652 39159652 C A TTC21A Missense_Mutation p.S270Y 0.48 tolerated(0.97) benign(0) TCGA-AA-A010-01 3 39185523 39185523 C T CSRNP1 Missense_Mutation p.A265T 0.32 tolerated(0.11) benign(0.031) TCGA-AA-A010-01 3 39228789 39228789 G A XIRP1 Silent p.I716I 0.34 TCGA-AA-A010-01 3 39229616 39229616 A G XIRP1 Missense_Mutation p.F441L 0.34 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 3 39307287 39307287 G A CX3CR1 Silent p.I270I 0.38 TCGA-AA-A010-01 3 39373942 39373942 C A CCR8 Silent p.V40V 0.35 TCGA-AA-A010-01 3 40465435 40465435 A G ENTPD3 Missense_Mutation p.Q445R 0.35 tolerated(0.21) benign(0.033) TCGA-AA-A010-01 3 40528924 40528924 G T ZNF619 Missense_Mutation p.R348I 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 3 40529008 40529008 G A ZNF619 Missense_Mutation p.R376Q 0.37 deleterious(0.04) probably_damaging(0.997) TCGA-AA-A010-01 3 40529743 40529743 G A ZNF619 3'UTR 0.53 TCGA-AA-A010-01 3 41439612 41439612 G A ULK4 Silent p.D1212D 0.30 TCGA-AA-A010-01 3 41723017 41723017 C T ULK4 Missense_Mutation p.R987Q 0.47 tolerated(0.12) benign(0.259) TCGA-AA-A010-01 3 41960009 41960009 T G ULK4 Missense_Mutation p.S223R 0.38 tolerated(0.06) benign(0.072) TCGA-AA-A010-01 3 42244045 42244045 C A TRAK1 Missense_Mutation p.F515L 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 3 42299630 42299630 A G CCK Missense_Mutation p.F103S 0.37 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 3 42681218 42681218 C T NKTR Missense_Mutation p.S1341L 0.33 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 3 42681237 42681237 T G NKTR Silent p.S1347S 0.36 TCGA-AA-A010-01 3 42704550 42704550 C A ZBTB47 Silent p.S556S 0.38 TCGA-AA-A010-01 3 42705736 42705736 G A ZBTB47 Silent p.K630K 0.33 TCGA-AA-A010-01 3 42739081 42739081 C T HHATL Missense_Mutation p.D262N 0.40 deleterious(0.03) benign(0.2) TCGA-AA-A010-01 3 42915953 42915953 G T CYP8B1 Silent p.L452L 0.37 TCGA-AA-A010-01 3 42916893 42916893 A C CYP8B1 Missense_Mutation p.L139R 0.40 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 3 42955845 42955845 G T ZNF662 Missense_Mutation p.D120Y 0.38 deleterious(0) benign(0.165) TCGA-AA-A010-01 3 42956704 42956704 G A ZNF662 Missense_Mutation p.R406K 0.39 deleterious(0.04) probably_damaging(0.963) TCGA-AA-A010-01 3 431045 431045 G A CHL1 Silent p.L786L 0.32 TCGA-AA-A010-01 3 43345160 43345160 G A SNRK Silent p.K155K 0.20 TCGA-AA-A010-01 3 43602722 43602722 C T ANO10 Missense_Mutation p.G489E 0.35 tolerated(0.68) benign(0.002) TCGA-AA-A010-01 3 436423 436423 A C CHL1 Missense_Mutation p.T988P 0.33 tolerated(0.27) possibly_damaging(0.522) TCGA-AA-A010-01 3 44286356 44286356 C A TOPAZ1 Silent p.V786V 0.30 TCGA-AA-A010-01 3 44351328 44351328 C T TOPAZ1 Silent p.V1384V 0.29 TCGA-AA-A010-01 3 44441862 44441862 C T TCAIM Missense_Mutation p.P301S 0.31 tolerated(0.15) benign(0.109) TCGA-AA-A010-01 3 44491989 44491989 T C ZNF445 Missense_Mutation p.N257S 0.38 tolerated(0.13) possibly_damaging(0.621) TCGA-AA-A010-01 3 44612697 44612697 G A ZKSCAN7 Missense_Mutation p.A699T 0.29 deleterious(0.05) probably_damaging(0.96) TCGA-AA-A010-01 3 44637003 44637003 A C ZNF660 3'UTR 0.35 TCGA-AA-A010-01 3 44673637 44673637 G T ZNF197 Missense_Mutation p.E197D 0.33 tolerated(0.96) probably_damaging(0.97) TCGA-AA-A010-01 3 44688138 44688138 C A ZNF197 3'Flank 0.44 TCGA-AA-A010-01 3 44762634 44762634 C A ZNF502 Missense_Mutation p.L109I 0.35 tolerated(0.45) benign(0.002) TCGA-AA-A010-01 3 44762658 44762658 C T ZNF502 Missense_Mutation p.R117C 0.52 deleterious(0) benign(0.116) TCGA-AA-A010-01 3 44762917 44762917 G T ZNF502 Missense_Mutation p.R203I 0.38 tolerated(0.14) possibly_damaging(0.845) TCGA-AA-A010-01 3 44763638 44763638 C T ZNF502 Silent p.G443G 0.39 TCGA-AA-A010-01 3 44777004 44777004 C T ZNF501 3'UTR 0.34 TCGA-AA-A010-01 3 45868915 45868915 G A LZTFL1 Nonsense_Mutation p.R272* 0.35 TCGA-AA-A010-01 3 45943279 45943279 G T CCR9 Missense_Mutation p.K333N 0.78 deleterious(0.01) benign(0.126) TCGA-AA-A010-01 3 45943340 45943340 A C CCR9 Missense_Mutation p.K354Q 0.48 deleterious(0.02) possibly_damaging(0.83) TCGA-AA-A010-01 3 45996856 45996856 C T FYCO1 Missense_Mutation p.D1277N 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 46307159 46307159 C A CCR3 Silent p.I191I 0.26 TCGA-AA-A010-01 3 46399715 46399715 C T CCR2 Nonsense_Mutation p.R233* 0.33 TCGA-AA-A010-01 3 46400420 46400420 C A CCR2 Intron 0.35 TCGA-AA-A010-01 3 46415893 46415893 C A CCR5 3'UTR 0.35 TCGA-AA-A010-01 3 46416267 46416267 C A CCR5 3'UTR 0.38 TCGA-AA-A010-01 3 46416849 46416849 C A CCR5 3'UTR 0.32 TCGA-AA-A010-01 3 46940936 46940936 C A PTH1R Silent p.V326V 0.44 TCGA-AA-A010-01 3 46944150 46944150 C T PTH1R Missense_Mutation p.S449F 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 3 46945250 46945250 A G PTH1R 3'UTR 0.47 TCGA-AA-A010-01 3 47163426 47163426 G A SETD2 Silent p.C900C 0.29 TCGA-AA-A010-01 3 4723091 4723091 C T ITPR1 Silent p.I1035I 0.33 TCGA-AA-A010-01 3 47446173 47446173 G A PTPN23 Missense_Mutation p.G64D 0.37 unknown(0) TCGA-AA-A010-01 3 47456472 47456472 G T SCAP Silent p.R1051R 0.40 TCGA-AA-A010-01 3 47663698 47663698 G A SMARCC1 Missense_Mutation p.A927V 0.32 deleterious(0) possibly_damaging(0.627) TCGA-AA-A010-01 3 47958186 47958186 C A MAP4 Missense_Mutation p.K377N 0.40 tolerated(0.38) benign(0.403) TCGA-AA-A010-01 3 4821291 4821291 G A ITPR1 Missense_Mutation p.A2102T 0.32 deleterious(0) possibly_damaging(0.545) TCGA-AA-A010-01 3 48219462 48219462 C A CDC25A Missense_Mutation p.R189I 0.47 tolerated(0.25) benign(0.014) TCGA-AA-A010-01 3 48465608 48465608 C T PLXNB1 Missense_Mutation p.G138E 0.45 tolerated(0.15) probably_damaging(1) TCGA-AA-A010-01 3 48622507 48622507 C T COL7A1 Missense_Mutation p.A1313T 0.35 unknown(0) TCGA-AA-A010-01 3 48624465 48624465 C T COL7A1 Silent p.T1072T 0.40 TCGA-AA-A010-01 3 48627903 48627903 C T COL7A1 Missense_Mutation p.S632N 0.39 unknown(0) TCGA-AA-A010-01 3 48631834 48631834 C T COL7A1 Missense_Mutation p.R78H 0.27 unknown(0) TCGA-AA-A010-01 3 48677889 48677889 T G CELSR3 Silent p.P3043P 0.42 TCGA-AA-A010-01 3 48682589 48682589 G A CELSR3 Silent p.F2617F 0.36 TCGA-AA-A010-01 3 48682979 48682979 C T CELSR3 Missense_Mutation p.R2565H 0.40 deleterious(0.04) probably_damaging(0.982) TCGA-AA-A010-01 3 48696659 48696659 C A CELSR3 Nonsense_Mutation p.E1137* 0.39 TCGA-AA-A010-01 3 48789132 48789132 G A PRKAR2A Silent p.F367F 0.36 TCGA-AA-A010-01 3 49055231 49055231 T C DALRD3 Missense_Mutation p.D178G 0.42 deleterious(0.01) benign(0.341) TCGA-AA-A010-01 3 49081934 49081934 G T QRICH1 Missense_Mutation p.L559I 0.31 deleterious(0.01) possibly_damaging(0.527) TCGA-AA-A010-01 3 49151717 49151717 C T USP19 Missense_Mutation p.V763I 0.36 tolerated(0.09) benign(0.289) TCGA-AA-A010-01 3 49152224 49152224 G A USP19 Missense_Mutation p.S753L 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 3 49201377 49201377 G A CCDC71 Missense_Mutation p.R89C 0.34 tolerated(0.07) benign(0.197) TCGA-AA-A010-01 3 49201664 49201664 C T CCDC71 5'UTR 0.22 TCGA-AA-A010-01 3 49692081 49692081 C A BSN Missense_Mutation p.L1698I 0.40 unknown(0) TCGA-AA-A010-01 3 49692202 49692202 C T BSN Missense_Mutation p.S1738L 0.37 unknown(0) TCGA-AA-A010-01 3 49693920 49693920 C A BSN Missense_Mutation p.L2311I 0.48 unknown(0) TCGA-AA-A010-01 3 49698824 49698824 C T BSN Silent p.G3182G 0.40 TCGA-AA-A010-01 3 49720671 49720671 C T APEH Missense_Mutation p.L699F 0.43 deleterious(0.02) benign(0.151) TCGA-AA-A010-01 3 49734832 49734832 T C RNF123 Missense_Mutation p.V95A 0.40 tolerated(0.14) benign(0.329) TCGA-AA-A010-01 3 49750049 49750049 G T RNF123 Missense_Mutation p.K878N 0.32 deleterious(0.02) possibly_damaging(0.791) TCGA-AA-A010-01 3 49770390 49770390 C A IP6K1 Missense_Mutation p.K150N 0.29 tolerated(0.19) benign(0.287) TCGA-AA-A010-01 3 49836776 49836776 C T CDHR4 Silent p.T48T 0.42 TCGA-AA-A010-01 3 49842341 49842341 C T FAM212A Missense_Mutation p.A262V 0.41 deleterious(0.01) benign(0.162) TCGA-AA-A010-01 3 49850499 49850499 C T UBA7 Missense_Mutation p.V155M 0.37 deleterious(0.02) benign(0.393) TCGA-AA-A010-01 3 50232213 50232213 A G GNAT1 Missense_Mutation p.E293G 0.32 tolerated(0.06) benign(0.349) TCGA-AA-A010-01 3 50311011 50311011 T C SEMA3B RNA 0.35 TCGA-AA-A010-01 3 50382917 50382917 A G ZMYND10 Splice_Site p.X31_splice 0.44 TCGA-AA-A010-01 3 50647848 50647848 A G CISH Silent p.C9C 0.32 TCGA-AA-A010-01 3 51387821 51387821 C T DOCK3 Missense_Mutation p.R1369W 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 3 51432315 51432315 C T RBM15B 3'UTR 0.39 TCGA-AA-A010-01 3 51497146 51497146 A G VPRBP Missense_Mutation p.V120A 0.28 tolerated(0.4) benign(0.225) TCGA-AA-A010-01 3 5214376 5214376 G A ARL8B Missense_Mutation p.R108Q 0.32 tolerated(0.06) benign(0.009) TCGA-AA-A010-01 3 52156396 52156396 A C POC1A Missense_Mutation p.L327R 0.39 tolerated(0.25) benign(0.091) TCGA-AA-A010-01 3 52239973 52239973 C T ALAS1 Missense_Mutation p.L307F 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 52242102 52242102 C T ALAS1 Missense_Mutation p.A390V 0.48 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 3 52257685 52257685 C T TLR9 Missense_Mutation p.R370H 0.41 tolerated(0.09) benign(0.045) TCGA-AA-A010-01 3 52361968 52361968 C A DNAH1 Missense_Mutation p.S270Y 0.35 benign(0.14) TCGA-AA-A010-01 3 52380746 52380746 G T DNAH1 Missense_Mutation p.D639Y 0.30 benign(0.181) TCGA-AA-A010-01 3 52386724 52386724 G T DNAH1 Splice_Site p.X1009_splice 0.38 TCGA-AA-A010-01 3 52389034 52389034 G A DNAH1 Missense_Mutation p.R1219H 0.35 probably_damaging(0.973) TCGA-AA-A010-01 3 52390737 52390737 C T DNAH1 Silent p.Y1267Y 0.36 TCGA-AA-A010-01 3 52423549 52423549 G A DNAH1 Missense_Mutation p.E3190K 0.34 benign(0.001) TCGA-AA-A010-01 3 52423570 52423570 C T DNAH1 Silent p.L3197L 0.39 TCGA-AA-A010-01 3 52429453 52429453 C T DNAH1 Missense_Mutation p.L3700F 0.44 benign(0.077) TCGA-AA-A010-01 3 52439816 52439816 T C BAP1 Missense_Mutation p.N299S 0.34 tolerated(1) benign(0) TCGA-AA-A010-01 3 52455723 52455723 A C PHF7 Missense_Mutation p.K211N 0.39 deleterious(0) benign(0.021) TCGA-AA-A010-01 3 52514328 52514328 C A NISCH Intron 0.33 TCGA-AA-A010-01 3 52537038 52537038 C T STAB1 Missense_Mutation p.R203C 0.38 tolerated(0.05) possibly_damaging(0.462) TCGA-AA-A010-01 3 52547239 52547239 G A STAB1 Silent p.E1084E 0.39 TCGA-AA-A010-01 3 52551366 52551366 G A STAB1 Missense_Mutation p.G1507D 0.40 deleterious(0.02) probably_damaging(0.914) TCGA-AA-A010-01 3 52554257 52554257 G A STAB1 Missense_Mutation p.R1817Q 0.41 deleterious(0.03) possibly_damaging(0.81) TCGA-AA-A010-01 3 52556909 52556909 G A STAB1 Missense_Mutation p.R2288H 0.40 deleterious(0.03) probably_damaging(0.984) TCGA-AA-A010-01 3 52557769 52557769 G A STAB1 Silent p.Q2464Q 0.36 TCGA-AA-A010-01 3 52568666 52568666 G A NT5DC2 5'Flank 0.33 TCGA-AA-A010-01 3 52729561 52729561 G A GLT8D1 Missense_Mutation p.R230C 0.37 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 3 52786180 52786180 C T NEK4 Missense_Mutation p.S379N 0.41 tolerated(0.45) benign(0.008) TCGA-AA-A010-01 3 52815959 52815959 C A ITIH1 Missense_Mutation p.H231N 0.37 deleterious(0.01) possibly_damaging(0.479) TCGA-AA-A010-01 3 52860891 52860891 G T ITIH4 Silent p.V145V 0.38 TCGA-AA-A010-01 3 52946615 52946615 G A SFMBT1 Missense_Mutation p.R557W 0.35 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 3 52962276 52962276 C T SFMBT1 Missense_Mutation p.A327T 0.33 deleterious(0.03) possibly_damaging(0.558) TCGA-AA-A010-01 3 54661844 54661844 G A CACNA2D3 Missense_Mutation p.A332T 0.39 tolerated(0.54) probably_damaging(0.999) TCGA-AA-A010-01 3 55052285 55052285 C T CACNA2D3 Silent p.F976F 0.36 TCGA-AA-A010-01 3 55513427 55513427 T G WNT5A Missense_Mutation p.K102N 0.41 tolerated(0.1) benign(0.082) TCGA-AA-A010-01 3 55514948 55514948 T C WNT5A Splice_Site p.X3_splice 0.36 TCGA-AA-A010-01 3 56114904 56114904 G A ERC2 Missense_Mutation p.R528C 0.36 tolerated(0.07) possibly_damaging(0.892) TCGA-AA-A010-01 3 56667152 56667152 T G FAM208A Missense_Mutation p.I1223L 0.45 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 3 56702468 56702468 C T FAM208A Missense_Mutation p.R285Q 0.35 deleterious(0.01) probably_damaging(0.935) TCGA-AA-A010-01 3 56779268 56779268 T G ARHGEF3 Missense_Mutation p.N311H 0.37 tolerated(0.09) possibly_damaging(0.875) TCGA-AA-A010-01 3 57109193 57109193 G A SPATA12 3'UTR 0.38 TCGA-AA-A010-01 3 57261944 57261944 G T APPL1 Missense_Mutation p.E11D 0.39 tolerated(0.59) benign(0.001) TCGA-AA-A010-01 3 57368829 57368829 G A DNAH12 Missense_Mutation p.P37S 0.44 tolerated(0.09) benign(0.019) TCGA-AA-A010-01 3 57391609 57391609 T G DNAH12 Missense_Mutation p.D2097A 0.34 deleterious(0) possibly_damaging(0.822) TCGA-AA-A010-01 3 57391612 57391612 C T DNAH12 Missense_Mutation p.R2096H 0.38 deleterious(0) possibly_damaging(0.812) TCGA-AA-A010-01 3 57432405 57432405 G A DNAH12 Silent p.F1243F 0.34 TCGA-AA-A010-01 3 57488146 57488146 C A DNAH12 Nonsense_Mutation p.E383* 0.36 TCGA-AA-A010-01 3 57817162 57817162 G T SLMAP Missense_Mutation p.R84I 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 3 57850569 57850569 G T SLMAP Intron 0.32 TCGA-AA-A010-01 3 58067371 58067371 G T FLNB Nonsense_Mutation p.E219* 0.37 TCGA-AA-A010-01 3 58081884 58081884 A G FLNB Missense_Mutation p.D308G 0.35 deleterious(0) benign(0.054) TCGA-AA-A010-01 3 58145286 58145286 G A FLNB Silent p.S2329S 0.36 TCGA-AA-A010-01 3 58413760 58413760 A C PDHB 3'UTR 0.29 TCGA-AA-A010-01 3 61547900 61547900 G A PTPRG 5'UTR 0.33 TCGA-AA-A010-01 3 61547904 61547904 G T PTPRG 5'UTR 0.36 TCGA-AA-A010-01 3 62204616 62204616 C T PTPRG Silent p.F749F 0.33 TCGA-AA-A010-01 3 62385189 62385189 G A CADPS Silent p.I1318I 0.42 TCGA-AA-A010-01 3 62501758 62501758 G T CADPS Missense_Mutation p.L853I 0.44 tolerated(0.57) possibly_damaging(0.694) TCGA-AA-A010-01 3 62570918 62570918 C A CADPS Missense_Mutation p.D507Y 0.32 deleterious(0) possibly_damaging(0.861) TCGA-AA-A010-01 3 62636721 62636721 A G CADPS Missense_Mutation p.M335T 0.38 deleterious(0) benign(0.042) TCGA-AA-A010-01 3 64132810 64132810 G A PRICKLE2 Silent p.S452S 0.37 TCGA-AA-A010-01 3 64599145 64599145 A G ADAMTS9 Missense_Mutation p.V1077A 0.36 tolerated(0.06) benign(0.06) TCGA-AA-A010-01 3 64608122 64608122 G A ADAMTS9 Missense_Mutation p.R844C 0.30 deleterious(0) probably_damaging(0.953) TCGA-AA-A010-01 3 66431247 66431247 C T LRIG1 Missense_Mutation p.E937K 0.27 tolerated(0.05) benign(0.018) TCGA-AA-A010-01 3 69072241 69072241 C A TMF1 3'UTR 0.26 TCGA-AA-A010-01 3 69092915 69092915 C T TMF1 Missense_Mutation p.D522N 0.35 deleterious(0) probably_damaging(0.933) TCGA-AA-A010-01 3 69171469 69171469 G T LMOD3 Silent p.I23I 0.38 TCGA-AA-A010-01 3 69988315 69988315 C T MITF Nonsense_Mutation p.R217* 0.33 TCGA-AA-A010-01 3 71026106 71026106 C T FOXP1 Missense_Mutation p.A508T 0.30 tolerated(0.43) probably_damaging(0.995) TCGA-AA-A010-01 3 72427676 72427676 A G RYBP Missense_Mutation p.S272P 0.41 deleterious(0.03) possibly_damaging(0.82) TCGA-AA-A010-01 3 72890312 72890312 C A SHQ1 Nonsense_Mutation p.E124* 0.39 TCGA-AA-A010-01 3 73004260 73004260 G T GXYLT2 Missense_Mutation p.K204N 0.40 tolerated(0.12) possibly_damaging(0.522) TCGA-AA-A010-01 3 73112849 73112849 C T PPP4R2 Nonsense_Mutation p.R149* 0.34 TCGA-AA-A010-01 3 77530268 77530268 A G ROBO2 Missense_Mutation p.M205V 0.42 deleterious(0) benign(0.039) TCGA-AA-A010-01 3 77623753 77623753 C T ROBO2 Missense_Mutation p.P708L 0.43 tolerated(0.05) probably_damaging(0.933) TCGA-AA-A010-01 3 77666807 77666807 G A ROBO2 Missense_Mutation p.G1162E 0.37 deleterious(0) probably_damaging(0.931) TCGA-AA-A010-01 3 77666949 77666949 G T ROBO2 Intron 0.43 TCGA-AA-A010-01 3 77693869 77693869 C T ROBO2 Missense_Mutation p.P1333S 0.44 deleterious(0.01) possibly_damaging(0.641) TCGA-AA-A010-01 3 78735023 78735023 A C ROBO1 Missense_Mutation p.F405L 0.41 tolerated(0.32) probably_damaging(0.992) TCGA-AA-A010-01 3 78766551 78766551 A C ROBO1 Missense_Mutation p.F264C 0.30 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 3 81754705 81754705 T G GBE1 Missense_Mutation p.K68T 0.37 tolerated(0.1) benign(0.171) TCGA-AA-A010-01 3 8607327 8607327 C T LMCD1 Silent p.C311C 0.31 TCGA-AA-A010-01 3 87309052 87309052 A G POU1F1 Missense_Mutation p.C316R 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 3 87310438 87310438 C T POU1F1 Missense_Mutation p.R243Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 3 88042339 88042339 T G HTR1F 3'UTR 0.39 TCGA-AA-A010-01 3 88042671 88042671 G A HTR1F 3'UTR 0.41 TCGA-AA-A010-01 3 88188773 88188773 G T ZNF654 Nonsense_Mutation p.E105* 0.43 TCGA-AA-A010-01 3 89259138 89259138 G T EPHA3 Missense_Mutation p.K94N 0.38 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 3 89259477 89259477 G A EPHA3 Silent p.K207K 0.40 TCGA-AA-A010-01 3 9005065 9005065 T A RAD18 Missense_Mutation p.D2V 0.29 deleterious_low_confidence(0.01) benign(0.118) TCGA-AA-A010-01 3 9099962 9099962 G A SRGAP3 Silent p.F332F 0.30 TCGA-AA-A010-01 3 9290793 9290793 C A SRGAP3 5'UTR 0.44 TCGA-AA-A010-01 3 93624742 93624742 C T PROS1 Missense_Mutation p.D163N 0.38 deleterious(0.04) benign(0.102) TCGA-AA-A010-01 3 93780212 93780212 C A DHFRL1 Missense_Mutation p.Q48H 0.39 deleterious(0.03) probably_damaging(0.923) TCGA-AA-A010-01 3 9422292 9422292 A T THUMPD3 Missense_Mutation p.I372F 0.31 tolerated(0.05) benign(0.285) TCGA-AA-A010-01 3 9426367 9426367 G A THUMPD3 Missense_Mutation p.E507K 0.38 tolerated_low_confidence(0.05) possibly_damaging(0.636) TCGA-AA-A010-01 3 9594219 9594219 C T LHFPL4 Missense_Mutation p.D49N 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 3 97202880 97202880 G A EPHA6 Missense_Mutation p.R726H 0.41 tolerated(0.21) benign(0.023) TCGA-AA-A010-01 3 9746441 9746441 C A CPNE9 Missense_Mutation p.L40I 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A010-01 3 97596278 97596278 T G CRYBG3 Missense_Mutation p.I132M 0.37 deleterious(0) possibly_damaging(0.703) TCGA-AA-A010-01 3 97664714 97664714 C A MINA Missense_Mutation p.K389N 0.26 tolerated(0.4) benign(0.007) TCGA-AA-A010-01 3 97806749 97806749 G A OR5AC2 Missense_Mutation p.A245T 0.45 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A010-01 3 9785550 9785550 C T BRPF1 Missense_Mutation p.A867V 0.31 tolerated(0.29) possibly_damaging(0.476) TCGA-AA-A010-01 3 98002570 98002570 C A OR5H2 Missense_Mutation p.S280Y 0.40 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 3 98002630 98002630 A C OR5H2 Missense_Mutation p.K300T 0.36 deleterious(0) benign(0.378) TCGA-AA-A010-01 3 98073003 98073003 T G OR5K4 Nonsense_Mutation p.Y102* 0.38 TCGA-AA-A010-01 3 98110324 98110324 T G OR5K3 Missense_Mutation p.V272G 0.36 tolerated(0.26) benign(0.049) TCGA-AA-A010-01 3 98251037 98251037 C A GPR15 Missense_Mutation p.L54I 0.40 deleterious(0.03) probably_damaging(0.974) TCGA-AA-A010-01 3 9876709 9876709 C A TTLL3 Intron 0.45 TCGA-AA-A010-01 3 9956186 9956186 G A IL17RE Intron 0.35 TCGA-AA-A010-01 3 99567715 99567715 C A FILIP1L Silent p.V935V 0.40 TCGA-AA-A010-01 3 99569207 99569207 T G FILIP1L Missense_Mutation p.K438T 0.52 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A010-01 3 9962199 9962199 G A IL17RC Missense_Mutation p.E235K 0.36 tolerated(0.13) benign(0.184) TCGA-AA-A010-01 3 99643225 99643225 C A FILIP1L Nonsense_Mutation p.E152* 0.37 TCGA-AA-A010-01 3 9976580 9976580 A C CRELD1 Missense_Mutation p.N79T 0.36 tolerated(0.53) benign(0.066) TCGA-AA-A010-01 3 99865849 99865849 G T CMSS1 Nonsense_Mutation p.E33* 0.45 TCGA-AA-A010-01 4 100131365 100131365 G T ADH6 Missense_Mutation p.F147L 0.40 deleterious(0) probably_damaging(0.935) TCGA-AA-A010-01 4 100134768 100134768 T G ADH6 Missense_Mutation p.K86T 0.38 deleterious(0) probably_damaging(0.928) TCGA-AA-A010-01 4 100257781 100257781 G T ADH1C 3'UTR 0.42 TCGA-AA-A010-01 4 100334209 100334209 T C ADH7 3'UTR 0.47 TCGA-AA-A010-01 4 100350699 100350699 A C ADH7 Missense_Mutation p.V57G 0.38 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 4 100463327 100463327 A C C4orf17 3'UTR 0.28 TCGA-AA-A010-01 4 100470258 100470258 G A TRMT10A Missense_Mutation p.S336F 0.30 deleterious_low_confidence(0.01) benign(0.146) TCGA-AA-A010-01 4 100479283 100479283 G T TRMT10A Missense_Mutation p.R91S 0.37 tolerated(0.07) probably_damaging(0.919) TCGA-AA-A010-01 4 100761453 100761453 G T DAPP1 Missense_Mutation p.D78Y 0.24 deleterious(0) probably_damaging(0.933) TCGA-AA-A010-01 4 100822202 100822202 G T DNAJB14 Missense_Mutation p.L375I 0.48 tolerated(0.41) benign(0.006) TCGA-AA-A010-01 4 10089996 10089996 A G WDR1 Missense_Mutation p.I213T 0.39 deleterious(0.01) possibly_damaging(0.752) TCGA-AA-A010-01 4 10105548 10105548 C T WDR1 Silent p.A67A 0.41 TCGA-AA-A010-01 4 102751251 102751251 G T BANK1 Missense_Mutation p.K119N 0.39 deleterious(0.03) benign(0.308) TCGA-AA-A010-01 4 103184218 103184218 C A SLC39A8 Nonsense_Mutation p.E456* 0.35 TCGA-AA-A010-01 4 103451059 103451059 G A NFKB1 Missense_Mutation p.A36T 0.38 tolerated(0.38) benign(0.038) TCGA-AA-A010-01 4 104029969 104029969 G T CENPE Missense_Mutation p.L2668I 0.36 probably_damaging(0.996) TCGA-AA-A010-01 4 104057513 104057513 G A CENPE Missense_Mutation p.L2103F 0.38 probably_damaging(0.996) TCGA-AA-A010-01 4 104080192 104080192 G A CENPE Missense_Mutation p.S859L 0.24 benign(0) TCGA-AA-A010-01 4 10491909 10491909 T G CLNK 3'UTR 0.31 TCGA-AA-A010-01 4 10509604 10509604 C A CLNK Missense_Mutation p.E321D 0.40 tolerated(0.07) benign(0.119) TCGA-AA-A010-01 4 106162465 106162465 C T TET2 Intron 0.29 TCGA-AA-A010-01 4 106861718 106861718 C T NPNT Nonsense_Mutation p.R260* 0.40 TCGA-AA-A010-01 4 107115904 107115904 G A TBCK Missense_Mutation p.A623V 0.37 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 4 107154151 107154151 A C TBCK Missense_Mutation p.F528C 0.41 deleterious(0) probably_damaging(0.923) TCGA-AA-A010-01 4 1073468 1073468 G A RNF212 Missense_Mutation p.S158L 0.43 tolerated(0.14) benign(0.074) TCGA-AA-A010-01 4 108866558 108866558 C A CYP2U1 Missense_Mutation p.S308Y 0.46 deleterious(0) probably_damaging(0.934) TCGA-AA-A010-01 4 108999440 108999440 G A LEF1 Missense_Mutation p.A315V 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 108999497 108999497 C A LEF1 Missense_Mutation p.R296I 0.38 deleterious(0) possibly_damaging(0.836) TCGA-AA-A010-01 4 109578755 109578755 T C OSTC Missense_Mutation p.V128A 0.35 deleterious(0.01) benign(0.125) TCGA-AA-A010-01 4 109780851 109780851 C T COL25A1 Silent p.E427E 0.34 TCGA-AA-A010-01 4 110603861 110603861 T G CCDC109B Missense_Mutation p.I192S 0.36 deleterious(0) probably_damaging(0.917) TCGA-AA-A010-01 4 110662242 110662242 G A CFI Missense_Mutation p.A520V 0.30 deleterious(0.05) possibly_damaging(0.904) TCGA-AA-A010-01 4 110754391 110754391 C T RRH Missense_Mutation p.A68V 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 4 110909853 110909853 A G EGF Missense_Mutation p.I908V 0.38 tolerated(0.51) benign(0.013) TCGA-AA-A010-01 4 111409741 111409741 C A ENPEP Missense_Mutation p.S230Y 0.41 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 4 111463981 111463981 C T ENPEP Missense_Mutation p.R628C 0.49 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 4 113181938 113181938 G T AP1AR Nonsense_Mutation p.E68* 0.30 TCGA-AA-A010-01 4 113352969 113352969 G A ALPK1 Missense_Mutation p.D756N 0.43 tolerated(0.42) benign(0.011) TCGA-AA-A010-01 4 113508637 113508637 G T C4orf21 Silent p.V1192V 0.36 TCGA-AA-A010-01 4 11400771 11400771 C T HS3ST1 Missense_Mutation p.E287K 0.37 tolerated(0.72) benign(0.009) TCGA-AA-A010-01 4 114276314 114276314 C T ANK2 Silent p.L2180L 0.43 TCGA-AA-A010-01 4 114277407 114277407 G T ANK2 Nonsense_Mutation p.E2545* 0.44 TCGA-AA-A010-01 4 114281999 114281999 C T ANK2 Missense_Mutation p.R3568W 0.31 probably_damaging(0.944) TCGA-AA-A010-01 4 114288807 114288807 C T ANK2 Silent p.C3706C 0.32 TCGA-AA-A010-01 4 114288822 114288822 C T ANK2 Silent p.I3711I 0.36 TCGA-AA-A010-01 4 114288948 114288948 C A ANK2 Missense_Mutation p.F3753L 0.41 benign(0.024) TCGA-AA-A010-01 4 114294532 114294532 A G ANK2 Missense_Mutation p.N3929S 0.40 benign(0.002) TCGA-AA-A010-01 4 115998230 115998230 C T NDST4 5'UTR 0.42 TCGA-AA-A010-01 4 118005372 118005372 C A TRAM1L1 3'UTR 0.39 TCGA-AA-A010-01 4 118005391 118005391 C A TRAM1L1 3'UTR 0.37 TCGA-AA-A010-01 4 118005761 118005761 C A TRAM1L1 Silent p.V263V 0.34 TCGA-AA-A010-01 4 118006295 118006295 G T TRAM1L1 Missense_Mutation p.F85L 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A010-01 4 119059216 119059216 G A NDST3 Missense_Mutation p.G411D 0.32 tolerated(0.11) probably_damaging(0.985) TCGA-AA-A010-01 4 119239566 119239566 C A PRSS12 Nonsense_Mutation p.E373* 0.27 TCGA-AA-A010-01 4 119652620 119652620 G A SEC24D Missense_Mutation p.R907C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 119726998 119726998 C A SEC24D Nonsense_Mutation p.G305* 0.47 TCGA-AA-A010-01 4 119736809 119736809 C T SEC24D Missense_Mutation p.R157Q 0.37 tolerated(0.41) benign(0.001) TCGA-AA-A010-01 4 119947922 119947922 T C SYNPO2 Missense_Mutation p.L133P 0.29 deleterious(0.01) benign(0.382) TCGA-AA-A010-01 4 119948584 119948584 C T SYNPO2 Missense_Mutation p.R354W 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 119951693 119951693 C T SYNPO2 Missense_Mutation p.T588M 0.29 deleterious(0.05) possibly_damaging(0.79) TCGA-AA-A010-01 4 119952737 119952737 C A SYNPO2 Missense_Mutation p.A936D 0.34 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 4 120072141 120072141 G T MYOZ2 Missense_Mutation p.R64I 0.14 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 120107206 120107206 G T MYOZ2 Missense_Mutation p.D216Y 0.37 tolerated(0.24) possibly_damaging(0.886) TCGA-AA-A010-01 4 120188515 120188515 G A USP53 Missense_Mutation p.R338Q 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A010-01 4 120241939 120241939 T C FABP2 Silent p.T42T 0.35 TCGA-AA-A010-01 4 120473732 120473732 T G PDE5A Missense_Mutation p.K457Q 0.36 tolerated(0.29) benign(0.1) TCGA-AA-A010-01 4 121957888 121957888 G T NDNF Missense_Mutation p.P413H 0.31 deleterious(0.02) probably_damaging(0.926) TCGA-AA-A010-01 4 121958713 121958713 G A NDNF Missense_Mutation p.S138L 0.28 tolerated(0.09) benign(0.129) TCGA-AA-A010-01 4 1222001 1222001 G A CTBP1 Missense_Mutation p.S109L 0.43 deleterious(0.05) benign(0.013) TCGA-AA-A010-01 4 122261742 122261742 G A QRFPR Missense_Mutation p.P122S 0.39 tolerated(0.11) benign(0.053) TCGA-AA-A010-01 4 122768588 122768588 C A BBS7 Missense_Mutation p.Q336H 0.28 tolerated(0.1) benign(0.006) TCGA-AA-A010-01 4 122780317 122780317 C A BBS7 Missense_Mutation p.D120Y 0.43 deleterious(0) possibly_damaging(0.908) TCGA-AA-A010-01 4 122820819 122820819 A G TRPC3 Missense_Mutation p.V832A 0.42 tolerated(0.89) benign(0.002) TCGA-AA-A010-01 4 122824104 122824104 A C TRPC3 Missense_Mutation p.F789C 0.46 deleterious(0.03) possibly_damaging(0.682) TCGA-AA-A010-01 4 123192355 123192355 C T KIAA1109 Missense_Mutation p.S2559F 0.33 possibly_damaging(0.794) TCGA-AA-A010-01 4 123268802 123268802 C A KIAA1109 Missense_Mutation p.P4333T 0.30 benign(0.001) TCGA-AA-A010-01 4 123283194 123283194 C A KIAA1109 Missense_Mutation p.S4937Y 0.27 possibly_damaging(0.797) TCGA-AA-A010-01 4 123317432 123317432 G T ADAD1 Missense_Mutation p.K208N 0.35 deleterious(0.04) benign(0.033) TCGA-AA-A010-01 4 123332433 123332433 A C ADAD1 Missense_Mutation p.K302T 0.52 deleterious(0.04) possibly_damaging(0.817) TCGA-AA-A010-01 4 123372858 123372858 T G IL2 3'UTR 0.53 TCGA-AA-A010-01 4 123534041 123534041 C A IL21 Nonsense_Mutation p.E135* 0.41 TCGA-AA-A010-01 4 123664030 123664030 C A BBS12 Missense_Mutation p.S328Y 0.32 deleterious(0) probably_damaging(0.984) TCGA-AA-A010-01 4 1245475 1245475 G T CTBP1 5'Flank 0.41 TCGA-AA-A010-01 4 125590199 125590199 C T ANKRD50 Silent p.K1411K 0.39 TCGA-AA-A010-01 4 125592250 125592250 C T ANKRD50 Missense_Mutation p.A728T 0.45 tolerated(0.31) benign(0.094) TCGA-AA-A010-01 4 126239901 126239901 G T FAT4 Missense_Mutation p.V779L 0.45 probably_damaging(0.934) TCGA-AA-A010-01 4 126240278 126240278 G T FAT4 Missense_Mutation p.E904D 0.40 probably_damaging(0.999) TCGA-AA-A010-01 4 126241593 126241593 G A FAT4 Missense_Mutation p.D1343N 0.40 probably_damaging(1) TCGA-AA-A010-01 4 126328090 126328090 G A FAT4 Missense_Mutation p.R1788H 0.47 benign(0.021) TCGA-AA-A010-01 4 126328170 126328170 C T FAT4 Missense_Mutation p.R1815C 0.43 probably_damaging(1) TCGA-AA-A010-01 4 126336405 126336405 A C FAT4 Missense_Mutation p.K2096T 0.33 benign(0.19) TCGA-AA-A010-01 4 126336576 126336576 T A FAT4 Missense_Mutation p.I2153N 0.28 benign(0.028) TCGA-AA-A010-01 4 126367672 126367672 C T FAT4 Missense_Mutation p.T2473I 0.35 probably_damaging(0.995) TCGA-AA-A010-01 4 126370225 126370225 G A FAT4 Missense_Mutation p.R2685Q 0.35 benign(0.023) TCGA-AA-A010-01 4 126370234 126370234 T G FAT4 Missense_Mutation p.L2688R 0.38 probably_damaging(0.992) TCGA-AA-A010-01 4 126370949 126370949 G T FAT4 Missense_Mutation p.E2926D 0.30 benign(0.026) TCGA-AA-A010-01 4 126371083 126371083 T C FAT4 Missense_Mutation p.I2971T 0.34 possibly_damaging(0.811) TCGA-AA-A010-01 4 126372820 126372820 G A FAT4 Missense_Mutation p.S3550N 0.29 benign(0.097) TCGA-AA-A010-01 4 128627647 128627647 T G INTU Missense_Mutation p.H598Q 0.37 deleterious(0.03) possibly_damaging(0.476) TCGA-AA-A010-01 4 128748546 128748546 T C HSPA4L Silent p.L711L 0.35 TCGA-AA-A010-01 4 128803004 128803004 C A PLK4 Missense_Mutation p.L17M 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 128814467 128814467 T C PLK4 Missense_Mutation p.F739S 0.35 tolerated(0.44) benign(0.053) TCGA-AA-A010-01 4 129099718 129099718 G A LARP1B Missense_Mutation p.R606Q 0.35 deleterious(0.03) benign(0.256) TCGA-AA-A010-01 4 129873958 129873958 G A SCLT1 Missense_Mutation p.S395F 0.35 deleterious(0.05) benign(0.046) TCGA-AA-A010-01 4 134072888 134072888 C T PCDH10 Silent p.F531F 0.40 TCGA-AA-A010-01 4 134072971 134072971 C A PCDH10 Missense_Mutation p.T559N 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 134084408 134084408 C T PCDH10 Missense_Mutation p.T1025M 0.40 tolerated_low_confidence(0.21) benign(0.014) TCGA-AA-A010-01 4 1341968 1341968 A G UVSSA Missense_Mutation p.K30R 0.42 tolerated(0.05) probably_damaging(0.96) TCGA-AA-A010-01 4 138442332 138442332 G A PCDH18 Missense_Mutation p.P1087S 0.32 tolerated(0.06) probably_damaging(0.999) TCGA-AA-A010-01 4 138452430 138452430 C T PCDH18 Silent p.T271T 0.38 TCGA-AA-A010-01 4 138452561 138452561 C A PCDH18 Missense_Mutation p.G228C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 138452661 138452661 C A PCDH18 Missense_Mutation p.K194N 0.43 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 138452779 138452779 C T PCDH18 Missense_Mutation p.R155H 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 140297537 140297537 G T NAA15 Nonsense_Mutation p.E656* 0.43 TCGA-AA-A010-01 4 141889000 141889000 A T RNF150 Missense_Mutation p.I171N 0.37 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 4 142640605 142640605 G A IL15 5'UTR 0.38 TCGA-AA-A010-01 4 143067094 143067094 T C INPP4B Missense_Mutation p.D540G 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A010-01 4 144135650 144135650 C T USP38 Silent p.L841L 0.29 TCGA-AA-A010-01 4 144359747 144359747 C T GAB1 Nonsense_Mutation p.R397* 0.38 TCGA-AA-A010-01 4 144474322 144474322 G T SMARCA5 Missense_Mutation p.K1048N 0.29 deleterious(0.02) benign(0.103) TCGA-AA-A010-01 4 144826643 144826643 G T GYPE Silent p.I6I 0.31 TCGA-AA-A010-01 4 145061774 145061774 T C GYPA Missense_Mutation p.I5M 0.38 tolerated(0.09) probably_damaging(0.996) TCGA-AA-A010-01 4 145635479 145635479 A G HHIP Missense_Mutation p.Y509C 0.48 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 145640093 145640093 T G HHIP Missense_Mutation p.I582S 0.42 deleterious(0.03) benign(0.045) TCGA-AA-A010-01 4 145916572 145916572 G T ANAPC10 Missense_Mutation p.P171T 0.29 tolerated(0.34) possibly_damaging(0.636) TCGA-AA-A010-01 4 145916641 145916641 C T ANAPC10 Missense_Mutation p.G148R 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 4 146058656 146058656 C A OTUD4 Missense_Mutation p.V1026F 0.40 tolerated(1) unknown(0) TCGA-AA-A010-01 4 146062645 146062645 T C OTUD4 Missense_Mutation p.T592A 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 4 146700531 146700531 T C ZNF827 Missense_Mutation p.H839R 0.40 deleterious(0) possibly_damaging(0.751) TCGA-AA-A010-01 4 146823704 146823704 C T ZNF827 Missense_Mutation p.R236Q 0.30 deleterious(0) benign(0.305) TCGA-AA-A010-01 4 147110881 147110881 T G LSM6 3'UTR 0.35 TCGA-AA-A010-01 4 147830237 147830237 G T TTC29 Missense_Mutation p.P114H 0.36 tolerated(0.21) benign(0.086) TCGA-AA-A010-01 4 147830383 147830383 C A TTC29 Missense_Mutation p.K65N 0.25 deleterious(0.01) possibly_damaging(0.655) TCGA-AA-A010-01 4 148579069 148579069 C A PRMT10 Nonsense_Mutation p.E402* 0.32 TCGA-AA-A010-01 4 148768342 148768342 A C ARHGAP10 Missense_Mutation p.K118T 0.36 deleterious(0.03) benign(0.004) TCGA-AA-A010-01 4 149035313 149035313 G T NR3C2 Missense_Mutation p.S914Y 0.38 deleterious(0.02) possibly_damaging(0.896) TCGA-AA-A010-01 4 151749692 151749692 T C LRBA Missense_Mutation p.D1604G 0.34 deleterious(0.01) benign(0.075) TCGA-AA-A010-01 4 152679971 152679971 T G PET112 Missense_Mutation p.N94H 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 153332524 153332524 C T FBXW7 Silent p.T144T 0.31 TCGA-AA-A010-01 4 153691118 153691118 C A TIGD4 Nonsense_Mutation p.E347* 0.38 TCGA-AA-A010-01 4 153691167 153691167 A G TIGD4 Silent p.Y330Y 0.39 TCGA-AA-A010-01 4 153691255 153691255 G A TIGD4 Missense_Mutation p.S301F 0.36 deleterious(0) possibly_damaging(0.789) TCGA-AA-A010-01 4 153691588 153691588 C T TIGD4 Missense_Mutation p.R190Q 0.34 tolerated(0.66) benign(0.017) TCGA-AA-A010-01 4 153692577 153692577 G T TIGD4 5'UTR 0.29 TCGA-AA-A010-01 4 153875371 153875371 C A FHDC1 Missense_Mutation p.S188Y 0.34 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 4 153881906 153881906 C T FHDC1 Missense_Mutation p.R254W 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 154237137 154237137 G A TRIM2 Missense_Mutation p.D590N 0.39 deleterious(0.02) possibly_damaging(0.563) TCGA-AA-A010-01 4 154523697 154523697 C A KIAA0922 Missense_Mutation p.F819L 0.25 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 4 155157658 155157658 C A DCHS2 Nonsense_Mutation p.E2261* 0.27 TCGA-AA-A010-01 4 155157992 155157992 G T DCHS2 Missense_Mutation p.F2149L 0.41 tolerated(0.51) benign(0.015) TCGA-AA-A010-01 4 155160397 155160397 C A DCHS2 Missense_Mutation p.D2018Y 0.50 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 155237036 155237036 C T DCHS2 Silent p.Q1253Q 0.49 TCGA-AA-A010-01 4 155241708 155241708 C A DCHS2 Missense_Mutation p.D1160Y 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 155243611 155243611 C T DCHS2 Missense_Mutation p.A895T 0.45 deleterious(0.04) probably_damaging(0.949) TCGA-AA-A010-01 4 155468976 155468976 C T PLRG1 Missense_Mutation p.R49H 0.34 tolerated(0.16) benign(0.006) TCGA-AA-A010-01 4 155490793 155490793 G T FGB Missense_Mutation p.Q362H 0.33 tolerated(0.16) benign(0.028) TCGA-AA-A010-01 4 155505902 155505902 A C FGA Missense_Mutation p.F659V 0.42 tolerated(0.4) benign(0.145) TCGA-AA-A010-01 4 155506551 155506551 G T FGA Intron 0.40 TCGA-AA-A010-01 4 155527861 155527861 G A FGG Silent p.Y375Y 0.35 TCGA-AA-A010-01 4 155533713 155533713 G T FGG Missense_Mutation p.L17I 0.33 deleterious(0.04) benign(0.419) TCGA-AA-A010-01 4 15556721 15556721 C A CC2D2A Nonsense_Mutation p.S838* 0.40 TCGA-AA-A010-01 4 155720212 155720212 A G RBM46 Missense_Mutation p.S300G 0.31 tolerated(0.37) benign(0.007) TCGA-AA-A010-01 4 155720468 155720468 C A RBM46 Missense_Mutation p.S385Y 0.28 tolerated(0.05) probably_damaging(0.942) TCGA-AA-A010-01 4 15581669 15581669 C T CC2D2A Missense_Mutation p.R1284C 0.48 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 156289661 156289661 C T MAP9 Intron 0.27 TCGA-AA-A010-01 4 156631770 156631770 C T GUCY1A3 Silent p.I151I 0.31 TCGA-AA-A010-01 4 156632281 156632281 G T GUCY1A3 Nonsense_Mutation p.E322* 0.30 TCGA-AA-A010-01 4 156634363 156634363 C A GUCY1A3 Silent p.L400L 0.33 TCGA-AA-A010-01 4 156638432 156638432 C A GUCY1A3 Missense_Mutation p.S565Y 0.40 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 4 156651186 156651186 C T GUCY1A3 Missense_Mutation p.L626F 0.33 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 4 156726280 156726280 G A GUCY1B3 Missense_Mutation p.D579N 0.49 deleterious(0.01) probably_damaging(0.983) TCGA-AA-A010-01 4 156773395 156773395 C A ASIC5 Missense_Mutation p.R220I 0.41 deleterious(0.01) benign(0.026) TCGA-AA-A010-01 4 156835558 156835558 G T TDO2 Missense_Mutation p.E270D 0.34 tolerated(0.18) possibly_damaging(0.595) TCGA-AA-A010-01 4 15709250 15709250 T C BST1 Silent p.C144C 0.34 TCGA-AA-A010-01 4 157689081 157689081 G T PDGFC Missense_Mutation p.F255L 0.58 tolerated(0.08) possibly_damaging(0.844) TCGA-AA-A010-01 4 158091876 158091876 T G GLRB Nonsense_Mutation p.L497* 0.56 TCGA-AA-A010-01 4 158262473 158262473 C A GRIA2 Silent p.I634I 0.32 TCGA-AA-A010-01 4 158282178 158282178 G A GRIA2 Intron 0.30 TCGA-AA-A010-01 4 159520580 159520580 C A RXFP1 Missense_Mutation p.A130E 0.44 tolerated(0.25) benign(0.003) TCGA-AA-A010-01 4 159606270 159606270 C A ETFDH Missense_Mutation p.H169N 0.35 deleterious(0.01) benign(0.197) TCGA-AA-A010-01 4 159636528 159636528 C T PPID Missense_Mutation p.D225N 0.24 tolerated(0.08) benign(0.016) TCGA-AA-A010-01 4 160264195 160264195 G A RAPGEF2 Missense_Mutation p.E834K 0.30 tolerated(0.08) possibly_damaging(0.599) TCGA-AA-A010-01 4 16026840 16026840 C T PROM1 Missense_Mutation p.R202Q 0.29 tolerated(0.26) benign(0.317) TCGA-AA-A010-01 4 16034998 16034998 T G PROM1 Silent p.R146R 0.47 TCGA-AA-A010-01 4 162402249 162402249 C A FSTL5 Missense_Mutation p.D511Y 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A010-01 4 162431556 162431556 C A FSTL5 Nonsense_Mutation p.E445* 0.39 TCGA-AA-A010-01 4 162459420 162459420 G A FSTL5 Missense_Mutation p.R404C 0.48 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 4 164246624 164246624 C T NPY1R Missense_Mutation p.R329K 0.38 tolerated(1) benign(0.002) TCGA-AA-A010-01 4 164272834 164272834 A G NPY5R 3'UTR 0.58 TCGA-AA-A010-01 4 164393620 164393620 C T TKTL2 Missense_Mutation p.V423I 0.39 tolerated(0.11) benign(0.041) TCGA-AA-A010-01 4 164435252 164435252 C A TMA16 Missense_Mutation p.H61N 0.46 tolerated(0.33) benign(0.019) TCGA-AA-A010-01 4 164450136 164450136 G T MARCH1 Missense_Mutation p.L212I 0.35 tolerated(0.07) possibly_damaging(0.524) TCGA-AA-A010-01 4 165879169 165879169 C A FAM218A 3'UTR 0.30 TCGA-AA-A010-01 4 165879245 165879245 C T FAM218A 3'UTR 0.38 TCGA-AA-A010-01 4 165879715 165879715 T G FAM218A 3'UTR 0.51 TCGA-AA-A010-01 4 165961416 165961416 C T TRIM60 Silent p.S64S 0.36 TCGA-AA-A010-01 4 166232625 166232625 C T KLHL2 Missense_Mutation p.S420F 0.35 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 4 166235189 166235189 T G KLHL2 Missense_Mutation p.L498V 0.37 tolerated(0.16) benign(0.206) TCGA-AA-A010-01 4 166385551 166385551 A C CPE Missense_Mutation p.E106A 0.35 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 4 166999172 166999172 G A TLL1 Missense_Mutation p.R811Q 0.34 deleterious(0) probably_damaging(0.985) TCGA-AA-A010-01 4 167656042 167656042 G T SPOCK3 3'UTR 0.29 TCGA-AA-A010-01 4 169204608 169204608 T C DDX60 Missense_Mutation p.K571E 0.20 tolerated(0.18) benign(0.009) TCGA-AA-A010-01 4 169209354 169209354 G T DDX60 Missense_Mutation p.A385D 0.36 deleterious(0) probably_damaging(0.972) TCGA-AA-A010-01 4 169327812 169327812 C A DDX60L Nonsense_Mutation p.E1009* 0.26 TCGA-AA-A010-01 4 169432682 169432682 C A PALLD Silent p.S9S 0.29 TCGA-AA-A010-01 4 170057765 170057765 A G SH3RF1 Missense_Mutation p.S258P 0.41 tolerated(0.1) possibly_damaging(0.52) TCGA-AA-A010-01 4 1701316 1701316 C T SLBP Missense_Mutation p.D152N 0.37 deleterious(0) benign(0.207) TCGA-AA-A010-01 4 170429410 170429410 G A NEK1 Missense_Mutation p.R608C 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 170459006 170459006 C T NEK1 Missense_Mutation p.R540Q 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 170476898 170476898 G A NEK1 Missense_Mutation p.A512V 0.46 tolerated(0.4) benign(0.005) TCGA-AA-A010-01 4 170498197 170498197 G T NEK1 Missense_Mutation p.S301Y 0.40 deleterious(0.02) benign(0.135) TCGA-AA-A010-01 4 170502041 170502041 C A NEK1 Nonsense_Mutation p.E274* 0.39 TCGA-AA-A010-01 4 170610214 170610214 G T CLCN3 Missense_Mutation p.D147Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 170618463 170618463 T C CLCN3 Missense_Mutation p.Y381H 0.35 deleterious(0.05) probably_damaging(0.996) TCGA-AA-A010-01 4 170652862 170652862 C A C4orf27 Missense_Mutation p.G301V 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 4 170927088 170927088 G T MFAP3L 5'UTR 0.33 TCGA-AA-A010-01 4 1730508 1730508 T G TACC3 Missense_Mutation p.L460R 0.32 tolerated(0.13) benign(0.025) TCGA-AA-A010-01 4 174253027 174253027 T G HMGB2 3'UTR 0.25 TCGA-AA-A010-01 4 1746840 1746840 T A TACC3 3'UTR 0.20 TCGA-AA-A010-01 4 175564972 175564972 G T GLRA3 Missense_Mutation p.L454I 0.30 tolerated_low_confidence(0.34) benign(0.005) TCGA-AA-A010-01 4 175603979 175603979 C G GLRA3 Missense_Mutation p.R229P 0.34 tolerated(0.25) possibly_damaging(0.706) TCGA-AA-A010-01 4 175649721 175649721 G T GLRA3 Missense_Mutation p.F132L 0.35 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 4 175898449 175898449 G A ADAM29 Silent p.K591K 0.36 TCGA-AA-A010-01 4 176556136 176556136 C A GPM6A Missense_Mutation p.D253Y 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 17694935 17694935 G T FAM184B Missense_Mutation p.S493Y 0.38 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 4 177046287 177046287 G T WDR17 Nonsense_Mutation p.E215* 0.43 TCGA-AA-A010-01 4 17706772 17706772 G T FAM184B Missense_Mutation p.L410I 0.39 tolerated(0.09) possibly_damaging(0.814) TCGA-AA-A010-01 4 177093625 177093625 G T WDR17 Nonsense_Mutation p.E1107* 0.35 TCGA-AA-A010-01 4 177100691 177100691 C T WDR17 Silent p.F1310F 0.35 TCGA-AA-A010-01 4 177136704 177136704 G T ASB5 3'UTR 0.31 TCGA-AA-A010-01 4 177142387 177142387 C T ASB5 Missense_Mutation p.E197K 0.34 tolerated(0.13) benign(0.077) TCGA-AA-A010-01 4 177249469 177249469 G A SPCS3 Silent p.T177T 0.23 TCGA-AA-A010-01 4 177605096 177605096 C A VEGFC Missense_Mutation p.R415I 0.50 deleterious(0.01) benign(0.019) TCGA-AA-A010-01 4 177608561 177608561 C A VEGFC Nonsense_Mutation p.E309* 0.42 TCGA-AA-A010-01 4 177649043 177649043 C T VEGFC Silent p.A147A 0.40 TCGA-AA-A010-01 4 178274863 178274863 A G NEIL3 Missense_Mutation p.N481D 0.39 tolerated(0.2) benign(0.01) TCGA-AA-A010-01 4 178357481 178357481 C T AGA Missense_Mutation p.G216E 0.32 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 4 1803357 1803357 A G FGFR3 Missense_Mutation p.Q209R 0.34 tolerated(0.12) benign(0.043) TCGA-AA-A010-01 4 183675994 183675994 A G TENM3 Missense_Mutation p.N1492D 0.39 deleterious(0.01) benign(0.021) TCGA-AA-A010-01 4 183960075 183960075 T G FAM92A1P2 RNA 0.44 TCGA-AA-A010-01 4 184166599 184166599 C T WWC2 Silent p.S211S 0.37 TCGA-AA-A010-01 4 184368296 184368296 G T CDKN2AIP Nonsense_Mutation p.E487* 0.40 TCGA-AA-A010-01 4 184562425 184562425 G T RWDD4 3'UTR 0.16 TCGA-AA-A010-01 4 184562607 184562607 G T RWDD4 Silent p.G183G 0.26 TCGA-AA-A010-01 4 184628024 184628024 C T TRAPPC11 Silent p.T1040T 0.34 TCGA-AA-A010-01 4 185339750 185339750 C A IRF2 Missense_Mutation p.K100N 0.32 tolerated(0.26) possibly_damaging(0.652) TCGA-AA-A010-01 4 185340688 185340688 G A IRF2 Missense_Mutation p.A41V 0.43 deleterious(0) probably_damaging(0.919) TCGA-AA-A010-01 4 185553461 185553461 C A CASP3 Missense_Mutation p.D90Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 4 185599412 185599412 C T PRIMPOL Missense_Mutation p.R291W 0.42 benign(0.303) TCGA-AA-A010-01 4 185599466 185599466 G T PRIMPOL Missense_Mutation p.D309Y 0.39 possibly_damaging(0.886) TCGA-AA-A010-01 4 185623534 185623534 C A CENPU Nonsense_Mutation p.E287* 0.35 TCGA-AA-A010-01 4 186066971 186066971 T G SLC25A4 Missense_Mutation p.S219R 0.42 tolerated(0.13) benign(0.186) TCGA-AA-A010-01 4 186112298 186112298 T C KIAA1430 Missense_Mutation p.D18G 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 4 186180031 186180031 C T SNX25 Silent p.L18L 0.28 TCGA-AA-A010-01 4 186298110 186298110 C A LRP2BP Nonsense_Mutation p.G57* 0.33 TCGA-AA-A010-01 4 186353143 186353143 T C C4orf47 Silent p.F36F 0.50 TCGA-AA-A010-01 4 186379789 186379789 G T CCDC110 Missense_Mutation p.S651Y 0.32 deleterious(0.02) probably_damaging(0.967) TCGA-AA-A010-01 4 186380033 186380033 C A CCDC110 Nonsense_Mutation p.E570* 0.32 TCGA-AA-A010-01 4 186380551 186380551 C T CCDC110 Missense_Mutation p.R397K 0.40 tolerated(1) benign(0.002) TCGA-AA-A010-01 4 186381136 186381136 C T CCDC110 Missense_Mutation p.R202H 0.33 tolerated(0.65) benign(0.002) TCGA-AA-A010-01 4 186381156 186381156 C A CCDC110 Missense_Mutation p.K195N 0.33 tolerated(0.1) benign(0.315) TCGA-AA-A010-01 4 186423334 186423334 G T PDLIM3 3'UTR 0.48 TCGA-AA-A010-01 4 187084771 187084771 C A FAM149A Missense_Mutation p.L343I 0.37 deleterious(0) probably_damaging(0.925) TCGA-AA-A010-01 4 187516852 187516852 C T FAT1 Missense_Mutation p.D4377N 0.38 probably_damaging(0.999) TCGA-AA-A010-01 4 187525066 187525066 C A FAT1 Missense_Mutation p.E3538D 0.40 probably_damaging(0.93) TCGA-AA-A010-01 4 187540596 187540596 C T FAT1 Missense_Mutation p.D2382N 0.35 benign(0.165) TCGA-AA-A010-01 4 187542151 187542151 C T FAT1 Silent p.A1863A 0.33 TCGA-AA-A010-01 4 187629028 187629028 T G FAT1 Missense_Mutation p.N652H 0.27 benign(0.008) TCGA-AA-A010-01 4 188923979 188923979 G T ZFP42 Missense_Mutation p.K6N 0.33 tolerated(0.15) possibly_damaging(0.902) TCGA-AA-A010-01 4 188925226 188925226 G T ZFP42 3'UTR 0.26 TCGA-AA-A010-01 4 189061066 189061066 G T TRIML1 Missense_Mutation p.Q118H 0.37 tolerated(0.12) benign(0.01) TCGA-AA-A010-01 4 1953898 1953898 G A WHSC1 Missense_Mutation p.A693T 0.33 tolerated(0.18) benign(0.001) TCGA-AA-A010-01 4 1991465 1991465 C T NELFA Missense_Mutation p.A183T 0.38 deleterious(0) possibly_damaging(0.63) TCGA-AA-A010-01 4 1993286 1993286 C A NELFA Nonsense_Mutation p.E134* 0.33 TCGA-AA-A010-01 4 20525510 20525510 C T SLIT2 Missense_Mutation p.R420W 0.37 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 4 20541068 20541068 T C SLIT2 Silent p.L613L 0.34 TCGA-AA-A010-01 4 20555580 20555580 T G SLIT2 Missense_Mutation p.F905C 0.49 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 20620405 20620405 G T SLIT2 Missense_Mutation p.G1455W 0.27 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 4 20751288 20751288 G A KCNIP4 Silent p.F142F 0.33 TCGA-AA-A010-01 4 2233740 2233741 - T HAUS3 Frame_Shift_Ins p.F576Ifs*5 0.21 TCGA-AA-A010-01 4 22389573 22389573 C T GPR125 Missense_Mutation p.D1241N 0.33 deleterious(0.05) probably_damaging(0.998) TCGA-AA-A010-01 4 2254155 2254155 G A MXD4 Missense_Mutation p.R97W 0.39 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 4 24521840 24521840 C T MIR573 RNA 0.35 TCGA-AA-A010-01 4 24556419 24556419 G A DHX15 Nonsense_Mutation p.R337* 0.39 TCGA-AA-A010-01 4 24578022 24578022 C T DHX15 Silent p.P117P 0.30 TCGA-AA-A010-01 4 24810023 24810023 G A CCDC149 Silent p.T526T 0.38 TCGA-AA-A010-01 4 25005431 25005431 C T LGI2 Missense_Mutation p.R427Q 0.41 tolerated(0.44) possibly_damaging(0.732) TCGA-AA-A010-01 4 2515645 2515645 C T RNF4 3'UTR 0.42 TCGA-AA-A010-01 4 25677861 25677861 C A SLC34A2 Silent p.I521I 0.36 TCGA-AA-A010-01 4 25759345 25759345 G A SEL1L3 Missense_Mutation p.R1051W 0.34 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 4 25821487 25821487 C A SEL1L3 Nonsense_Mutation p.E456* 0.44 TCGA-AA-A010-01 4 25915876 25915876 A G SMIM20 5'UTR 0.27 TCGA-AA-A010-01 4 264505 264505 T G ZNF732 3'UTR 0.41 TCGA-AA-A010-01 4 264886 264886 T G ZNF732 3'UTR 0.48 TCGA-AA-A010-01 4 26490892 26490892 G A CCKAR Silent p.F109F 0.35 TCGA-AA-A010-01 4 2951824 2951824 G A NOP14 Silent p.S373S 0.42 TCGA-AA-A010-01 4 2952785 2952785 A C NOP14 Intron 0.32 TCGA-AA-A010-01 4 3037162 3037162 C T GRK4 Missense_Mutation p.A440V 0.34 tolerated(0.09) benign(0.114) TCGA-AA-A010-01 4 30724073 30724073 C T PCDH7 Silent p.I343I 0.33 TCGA-AA-A010-01 4 30724556 30724556 C A PCDH7 Silent p.V504V 0.43 TCGA-AA-A010-01 4 3133099 3133099 G A HTT Silent p.S691S 0.39 TCGA-AA-A010-01 4 3240276 3240276 C T HTT Silent p.I2998I 0.35 TCGA-AA-A010-01 4 3441251 3441251 C T RGS12 Missense_Mutation p.S1395L 0.33 tolerated_low_confidence(0.42) benign(0) TCGA-AA-A010-01 4 3441473 3441473 C A RGS12 3'UTR 0.36 TCGA-AA-A010-01 4 3478267 3478267 A G DOK7 Missense_Mutation p.Y177C 0.49 deleterious(0.02) probably_damaging(0.963) TCGA-AA-A010-01 4 36069844 36069844 G T ARAP2 Silent p.S1600S 0.44 TCGA-AA-A010-01 4 36152626 36152626 C T ARAP2 Silent p.L931L 0.42 TCGA-AA-A010-01 4 36162092 36162092 C A ARAP2 Nonsense_Mutation p.E811* 0.33 TCGA-AA-A010-01 4 36318044 36318044 C A DTHD1 Missense_Mutation p.S634Y 0.34 deleterious(0.01) benign(0.413) TCGA-AA-A010-01 4 37445082 37445082 A C KIAA1239 Missense_Mutation p.D491A 0.40 tolerated(0.12) benign(0.022) TCGA-AA-A010-01 4 37448899 37448899 G A KIAA1239 3'UTR 0.36 TCGA-AA-A010-01 4 37636637 37636637 G A RELL1 Silent p.G184G 0.42 TCGA-AA-A010-01 4 38119760 38119760 T C TBC1D1 Missense_Mutation p.F970S 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 38799707 38799707 A C TLR1 Missense_Mutation p.L249R 0.36 deleterious(0) probably_damaging(0.959) TCGA-AA-A010-01 4 38799736 38799736 T A TLR1 Missense_Mutation p.K239N 0.12 tolerated(0.28) benign(0.03) TCGA-AA-A010-01 4 38800127 38800127 G T TLR1 Missense_Mutation p.S109Y 0.35 tolerated(0.15) probably_damaging(0.975) TCGA-AA-A010-01 4 38829844 38829844 A G TLR6 Silent p.S417S 0.40 TCGA-AA-A010-01 4 38830311 38830311 T C TLR6 Missense_Mutation p.T262A 0.34 tolerated(0.54) benign(0.103) TCGA-AA-A010-01 4 38830681 38830681 G A TLR6 Silent p.I138I 0.38 TCGA-AA-A010-01 4 38880018 38880018 G A FAM114A1 Missense_Mutation p.E107K 0.41 tolerated(0.05) possibly_damaging(0.509) TCGA-AA-A010-01 4 39083717 39083717 C T KLHL5 Missense_Mutation p.R326C 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 39114642 39114642 T - KLHL5 Frame_Shift_Del p.Y611Mfs*15 0.25 TCGA-AA-A010-01 4 39328261 39328261 C A RFC1 Splice_Site p.X189_splice 0.40 TCGA-AA-A010-01 4 39329269 39329269 T G RFC1 Missense_Mutation p.N147H 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.781) TCGA-AA-A010-01 4 39458073 39458073 C T RPL9 Missense_Mutation p.R115Q 0.40 tolerated(0.12) benign(0.114) TCGA-AA-A010-01 4 3949934 3949934 G A FAM86EP RNA 0.37 TCGA-AA-A010-01 4 39506037 39506037 C A UGDH Missense_Mutation p.K421N 0.37 deleterious(0.02) possibly_damaging(0.565) TCGA-AA-A010-01 4 39506118 39506118 G A UGDH Silent p.L394L 0.39 TCGA-AA-A010-01 4 39780140 39780140 C A UBE2K 3'UTR 0.23 TCGA-AA-A010-01 4 39868526 39868526 G A PDS5A Missense_Mutation p.A866V 0.30 deleterious(0.01) possibly_damaging(0.572) TCGA-AA-A010-01 4 40103911 40103911 C T N4BP2 Missense_Mutation p.A149V 0.35 deleterious(0) probably_damaging(0.989) TCGA-AA-A010-01 4 40104367 40104367 A G N4BP2 Missense_Mutation p.D301G 0.40 tolerated(0.47) benign(0.008) TCGA-AA-A010-01 4 40800906 40800906 A C NSUN7 Missense_Mutation p.K462T 0.32 tolerated(0.06) benign(0.41) TCGA-AA-A010-01 4 4190672 4190672 C T OTOP1 Missense_Mutation p.R566Q 0.31 deleterious(0) possibly_damaging(0.775) TCGA-AA-A010-01 4 419584 419584 G A ABCA11P RNA 0.46 TCGA-AA-A010-01 4 41985023 41985023 G A DCAF4L1 3'UTR 0.36 TCGA-AA-A010-01 4 41985852 41985852 T G DCAF4L1 3'UTR 0.40 TCGA-AA-A010-01 4 41986114 41986114 G T DCAF4L1 3'UTR 0.39 TCGA-AA-A010-01 4 41987102 41987102 G T DCAF4L1 3'UTR 0.32 TCGA-AA-A010-01 4 42037301 42037301 G T SLC30A9 Missense_Mutation p.R207I 0.32 tolerated(0.09) benign(0.042) TCGA-AA-A010-01 4 42065036 42065036 G A SLC30A9 Silent p.S310S 0.36 TCGA-AA-A010-01 4 42145521 42145521 G A BEND4 Silent p.C326C 0.31 TCGA-AA-A010-01 4 42596349 42596349 C A ATP8A1 Intron 0.36 TCGA-AA-A010-01 4 4304190 4304190 G A ZBTB49 Silent p.Q209Q 0.42 TCGA-AA-A010-01 4 4322742 4322742 A G ZBTB49 Missense_Mutation p.D666G 0.15 tolerated(0.32) benign(0.001) TCGA-AA-A010-01 4 435433 435433 C A ZNF721 3'Flank 0.35 TCGA-AA-A010-01 4 437072 437072 C T ZNF721 Missense_Mutation p.G395D 0.33 deleterious(0.02) possibly_damaging(0.864) TCGA-AA-A010-01 4 46066524 46066524 C T GABRG1 Missense_Mutation p.E187K 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 4 46125846 46125846 T C GABRG1 Missense_Mutation p.T29A 0.40 tolerated(0.53) benign(0) TCGA-AA-A010-01 4 46736955 46736955 C T COX7B2 3'UTR 0.41 TCGA-AA-A010-01 4 46966986 46966986 C T GABRA4 Splice_Site p.X378_splice 0.48 TCGA-AA-A010-01 4 46967223 46967223 T C GABRA4 Missense_Mutation p.T300A 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 47322224 47322224 G T GABRB1 Missense_Mutation p.S181I 0.31 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 4 47408849 47408849 A G GABRB1 Missense_Mutation p.Y329C 0.33 deleterious(0.03) probably_damaging(0.929) TCGA-AA-A010-01 4 47514823 47514823 G T ATP10D Missense_Mutation p.R89I 0.36 deleterious(0.01) possibly_damaging(0.886) TCGA-AA-A010-01 4 47556863 47556863 G A ATP10D Missense_Mutation p.D586N 0.38 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 4 47560276 47560276 C T ATP10D Missense_Mutation p.S807L 0.46 tolerated(0.39) benign(0.036) TCGA-AA-A010-01 4 47570890 47570890 G T ATP10D Nonsense_Mutation p.E964* 0.34 TCGA-AA-A010-01 4 47625592 47625592 C T CORIN Missense_Mutation p.E846K 0.44 tolerated(0.06) benign(0.343) TCGA-AA-A010-01 4 47625750 47625750 C T CORIN Missense_Mutation p.R793H 0.33 deleterious(0.03) possibly_damaging(0.868) TCGA-AA-A010-01 4 47628537 47628537 C A CORIN Nonsense_Mutation p.E734* 0.21 TCGA-AA-A010-01 4 47765553 47765553 C T CORIN Missense_Mutation p.A154T 0.35 tolerated(0.5) benign(0.001) TCGA-AA-A010-01 4 48151601 48151601 T C TEC Missense_Mutation p.I327V 0.36 deleterious(0.03) benign(0.035) TCGA-AA-A010-01 4 48485912 48485912 G A SLC10A4 Missense_Mutation p.A112T 0.30 tolerated(0.1) possibly_damaging(0.811) TCGA-AA-A010-01 4 48501400 48501400 A G FRYL 3'UTR 0.47 TCGA-AA-A010-01 4 48525088 48525088 G A FRYL Missense_Mutation p.R2451C 0.39 deleterious(0) possibly_damaging(0.816) TCGA-AA-A010-01 4 4862062 4862062 A G MSX1 Missense_Mutation p.M146V 0.36 tolerated(0.55) benign(0.007) TCGA-AA-A010-01 4 48887497 48887497 G T OCIAD2 3'UTR 0.33 TCGA-AA-A010-01 4 48906629 48906629 C A OCIAD2 Splice_Site 0.30 TCGA-AA-A010-01 4 48994006 48994006 G A CWH43 Missense_Mutation p.R137H 0.37 deleterious(0.02) possibly_damaging(0.542) TCGA-AA-A010-01 4 5018686 5018686 G T CYTL1 Nonsense_Mutation p.Y68* 0.45 TCGA-AA-A010-01 4 517628 517628 C T PIGG Silent p.C665C 0.35 TCGA-AA-A010-01 4 52861201 52861201 C A LRRC66 Missense_Mutation p.D663Y 0.53 deleterious(0.02) possibly_damaging(0.625) TCGA-AA-A010-01 4 52895019 52895019 G A SGCB Silent p.I166I 0.39 TCGA-AA-A010-01 4 53740198 53740198 G A SCFD2 Missense_Mutation p.P665S 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 54179905 54179905 C T SCFD2 Missense_Mutation p.E345K 0.31 deleterious(0.02) possibly_damaging(0.546) TCGA-AA-A010-01 4 54324954 54324954 G A FIP1L1 Missense_Mutation p.R545Q 0.36 deleterious(0.01) possibly_damaging(0.536) TCGA-AA-A010-01 4 54373570 54373570 A G LNX1 Missense_Mutation p.V230A 0.32 tolerated(0.18) benign(0.011) TCGA-AA-A010-01 4 54876267 54876267 C A CHIC2 Missense_Mutation p.D165Y 0.36 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 4 54966586 54966586 G A GSX2 Silent p.P25P 0.36 TCGA-AA-A010-01 4 55127268 55127268 G T PDGFRA Missense_Mutation p.S19I 0.35 tolerated(0.39) benign(0.058) TCGA-AA-A010-01 4 55127461 55127461 G A PDGFRA Silent p.T83T 0.33 TCGA-AA-A010-01 4 55133493 55133493 T C PDGFRA Missense_Mutation p.V266A 0.41 tolerated(0.77) benign(0.015) TCGA-AA-A010-01 4 55133597 55133597 G T PDGFRA Nonsense_Mutation p.E301* 0.38 TCGA-AA-A010-01 4 55133778 55133778 G T PDGFRA Nonsense_Mutation p.E331* 0.38 TCGA-AA-A010-01 4 55153687 55153687 C T PDGFRA Missense_Mutation p.L885F 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 55161294 55161294 C T PDGFRA Missense_Mutation p.S1042L 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A010-01 4 55561758 55561758 G A KIT Missense_Mutation p.V50M 0.39 tolerated(0.26) possibly_damaging(0.592) TCGA-AA-A010-01 4 55592136 55592136 G A KIT Missense_Mutation p.G487D 0.32 tolerated(0.1) probably_damaging(0.997) TCGA-AA-A010-01 4 5570234 5570234 C A EVC2 Missense_Mutation p.R1165I 0.29 deleterious(0) possibly_damaging(0.451) TCGA-AA-A010-01 4 5586353 5586353 G A EVC2 Silent p.S1018S 0.28 TCGA-AA-A010-01 4 55976899 55976899 G T KDR Missense_Mutation p.S338Y 0.35 deleterious(0) probably_damaging(0.956) TCGA-AA-A010-01 4 56230356 56230356 C T SRD5A3 Silent p.V160V 0.10 TCGA-AA-A010-01 4 5627575 5627575 G T EVC2 Silent p.V649V 0.39 TCGA-AA-A010-01 4 56291762 56291762 G A TMEM165 3'UTR 0.47 TCGA-AA-A010-01 4 56756457 56756457 T G EXOC1 Missense_Mutation p.S482A 0.29 tolerated(0.26) benign(0.009) TCGA-AA-A010-01 4 5731067 5731067 G T EVC Missense_Mutation p.A112S 0.37 deleterious(0.04) benign(0.432) TCGA-AA-A010-01 4 5747029 5747029 A C EVC Missense_Mutation p.E300D 0.36 deleterious(0.01) possibly_damaging(0.755) TCGA-AA-A010-01 4 57877004 57877004 G T POLR2B Nonsense_Mutation p.E547* 0.37 TCGA-AA-A010-01 4 57881683 57881683 G A POLR2B Missense_Mutation p.D606N 0.35 deleterious(0.02) possibly_damaging(0.67) TCGA-AA-A010-01 4 57881794 57881794 T A POLR2B Missense_Mutation p.L643M 0.47 deleterious(0.05) benign(0.303) TCGA-AA-A010-01 4 5969168 5969168 T C C4orf50 Missense_Mutation p.K618E 0.52 tolerated(1) benign(0.006) TCGA-AA-A010-01 4 62800601 62800601 T G LPHN3 Missense_Mutation p.L651W 0.38 deleterious(0.01) possibly_damaging(0.895) TCGA-AA-A010-01 4 62910205 62910205 G A LPHN3 Missense_Mutation p.R1183Q 0.34 deleterious(0.02) probably_damaging(0.964) TCGA-AA-A010-01 4 65145912 65145912 T A TECRL Missense_Mutation p.I324F 0.40 tolerated(0.16) benign(0.048) TCGA-AA-A010-01 4 66189828 66189828 G T EPHA5 3'UTR 0.71 TCGA-AA-A010-01 4 66230870 66230870 C A EPHA5 Nonsense_Mutation p.E701* 0.40 TCGA-AA-A010-01 4 66233087 66233087 G T EPHA5 Missense_Mutation p.H638N 0.23 tolerated(0.34) possibly_damaging(0.885) TCGA-AA-A010-01 4 6642546 6642546 C A MRFAP1 Intron 0.40 TCGA-AA-A010-01 4 678563 678563 G T MFSD7 Missense_Mutation p.P223H 0.38 deleterious(0) possibly_damaging(0.813) TCGA-AA-A010-01 4 68527892 68527892 A C UBA6 Intron 0.50 TCGA-AA-A010-01 4 6863322 6863322 G A KIAA0232 Missense_Mutation p.E405K 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 68699082 68699082 C A TMPRSS11D Missense_Mutation p.D178Y 0.54 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 4 68777138 68777138 A G TMPRSS11A Silent p.C396C 0.28 TCGA-AA-A010-01 4 68928493 68928493 G A TMPRSS11F Intron 0.39 TCGA-AA-A010-01 4 69199076 69199076 G T YTHDC1 Missense_Mutation p.S308Y 0.35 deleterious(0.01) possibly_damaging(0.862) TCGA-AA-A010-01 4 69203444 69203444 C A YTHDC1 Missense_Mutation p.R102I 0.43 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 4 69343157 69343157 C A TMPRSS11E Missense_Mutation p.L260I 0.37 tolerated(0.25) benign(0.111) TCGA-AA-A010-01 4 69416431 69416431 A G UGT2B17 Missense_Mutation p.L426S 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 69417606 69417606 C A UGT2B17 Missense_Mutation p.K343N 0.40 tolerated(0.07) benign(0.406) TCGA-AA-A010-01 4 69512829 69512829 C A UGT2B15 Missense_Mutation p.R529I 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-AA-A010-01 4 69520877 69520877 C A UGT2B15 Missense_Mutation p.K343N 0.09 tolerated(0.07) benign(0.12) TCGA-AA-A010-01 4 69536114 69536114 C A UGT2B15 Nonsense_Mutation p.E75* 0.34 TCGA-AA-A010-01 4 70079851 70079851 A C UGT2B11 Missense_Mutation p.V197G 0.18 tolerated(0.07) benign(0.02) TCGA-AA-A010-01 4 70080236 70080236 C T UGT2B11 Missense_Mutation p.A69T 0.32 tolerated(0.55) benign(0.008) TCGA-AA-A010-01 4 7012435 7012435 A G TBC1D14 Missense_Mutation p.D525G 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 70346561 70346561 C T UGT2B4 Missense_Mutation p.A460T 0.29 deleterious(0.01) possibly_damaging(0.764) TCGA-AA-A010-01 4 7043545 7043545 G A CCDC96 Missense_Mutation p.A374V 0.46 tolerated(0.06) benign(0.444) TCGA-AA-A010-01 4 7044257 7044257 C T CCDC96 Missense_Mutation p.E137K 0.35 tolerated_low_confidence(0.49) benign(0.064) TCGA-AA-A010-01 4 70455287 70455287 C T UGT2A1 Missense_Mutation p.E629K 0.34 deleterious(0.01) possibly_damaging(0.771) TCGA-AA-A010-01 4 70505004 70505004 C A UGT2A2 Nonsense_Mutation p.E119* 0.33 TCGA-AA-A010-01 4 70596219 70596219 C A SULT1B1 Missense_Mutation p.G260W 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 70599875 70599875 C A SULT1B1 Missense_Mutation p.E161D 0.41 tolerated(0.1) benign(0.362) TCGA-AA-A010-01 4 7062676 7062676 G A GRPEL1 Silent p.G189G 0.49 TCGA-AA-A010-01 4 71255398 71255398 G T SMR3B Missense_Mutation p.G25C 0.17 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 4 71508717 71508717 G T ENAM Missense_Mutation p.R525I 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-AA-A010-01 4 71509246 71509246 C A ENAM Silent p.P701P 0.34 TCGA-AA-A010-01 4 72102324 72102324 G A SLC4A4 Missense_Mutation p.A11T 0.37 tolerated(0.1) probably_damaging(0.917) TCGA-AA-A010-01 4 72121025 72121025 G T SLC4A4 Missense_Mutation p.K54N 0.35 tolerated(0.08) benign(0.032) TCGA-AA-A010-01 4 72204853 72204853 T C SLC4A4 Intron 0.36 TCGA-AA-A010-01 4 72399970 72399970 C T SLC4A4 Silent p.F769F 0.43 TCGA-AA-A010-01 4 72994476 72994476 C A NPFFR2 Missense_Mutation p.F158L 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-AA-A010-01 4 73013523 73013523 G A NPFFR2 Silent p.E521E 0.73 TCGA-AA-A010-01 4 73169776 73169776 C A ADAMTS3 Missense_Mutation p.G761V 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 4 73181623 73181623 C T ADAMTS3 Silent p.K517K 0.29 TCGA-AA-A010-01 4 73933783 73933783 G A COX18 Missense_Mutation p.R133C 0.40 tolerated(0.12) benign(0.035) TCGA-AA-A010-01 4 74000968 74000968 C T ANKRD17 Missense_Mutation p.A1034T 0.30 benign(0.001) TCGA-AA-A010-01 4 74357772 74357772 C T AFM Nonsense_Mutation p.R343* 0.43 TCGA-AA-A010-01 4 74441862 74441862 C T RASSF6 3'UTR 0.31 TCGA-AA-A010-01 4 76407873 76407873 G T RCHY1 Missense_Mutation p.L221I 0.55 tolerated(0.07) benign(0.081) TCGA-AA-A010-01 4 76489391 76489391 C A C4orf26 Missense_Mutation p.S60Y 0.40 deleterious_low_confidence(0) benign(0) TCGA-AA-A010-01 4 76489486 76489486 G A C4orf26 Missense_Mutation p.E92K 0.36 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-AA-A010-01 4 76522361 76522361 T G CDKL2 Missense_Mutation p.K360N 0.38 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 4 76571607 76571607 G A G3BP2 Missense_Mutation p.T364I 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A010-01 4 76582860 76582860 G A G3BP2 Missense_Mutation p.R78C 0.38 tolerated(0.08) benign(0.013) TCGA-AA-A010-01 4 76861231 76861231 C A NAAA Missense_Mutation p.E98D 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 76942988 76942988 C T CXCL10 3'UTR 0.38 TCGA-AA-A010-01 4 77055476 77055476 C T NUP54 Missense_Mutation p.D188N 0.47 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 4 77317424 77317424 C T CCDC158 Missense_Mutation p.E96K 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-AA-A010-01 4 7811480 7811480 C A AFAP1 Missense_Mutation p.K305N 0.26 deleterious(0) benign(0.171) TCGA-AA-A010-01 4 79173680 79173680 C T FRAS1 Silent p.C148C 0.35 TCGA-AA-A010-01 4 79385258 79385258 T C FRAS1 Missense_Mutation p.S2283P 0.36 benign(0.24) TCGA-AA-A010-01 4 79437039 79437039 C T FRAS1 Nonsense_Mutation p.R3421* 0.31 TCGA-AA-A010-01 4 79440632 79440632 A G FRAS1 Missense_Mutation p.T3513A 0.30 benign(0.145) TCGA-AA-A010-01 4 79460507 79460507 C A FRAS1 Missense_Mutation p.H3786Q 0.47 benign(0.065) TCGA-AA-A010-01 4 80246960 80246960 C A NAA11 Missense_Mutation p.E24D 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 80247153 80247153 C T NAA11 5'UTR 0.41 TCGA-AA-A010-01 4 80328290 80328290 A C GK2 Silent p.S355S 0.37 TCGA-AA-A010-01 4 80899213 80899213 C T ANTXR2 Missense_Mutation p.R432Q 0.36 tolerated(0.11) benign(0.087) TCGA-AA-A010-01 4 81124703 81124703 G T PRDM8 3'UTR 0.44 TCGA-AA-A010-01 4 81207672 81207672 G T FGF5 Missense_Mutation p.R218I 0.35 deleterious(0) probably_damaging(0.944) TCGA-AA-A010-01 4 81967605 81967605 C T BMP3 Missense_Mutation p.R344W 0.40 deleterious(0.01) benign(0.024) TCGA-AA-A010-01 4 82056361 82056361 C A PRKG2 Missense_Mutation p.R575I 0.35 deleterious(0) probably_damaging(0.911) TCGA-AA-A010-01 4 8233830 8233830 G T SH3TC1 Missense_Mutation p.E1026D 0.36 deleterious(0.01) probably_damaging(0.919) TCGA-AA-A010-01 4 83369094 83369094 G A ENOPH1 Missense_Mutation p.E36K 0.30 tolerated(0.48) benign(0) TCGA-AA-A010-01 4 83375977 83375977 C T ENOPH1 Silent p.F164F 0.38 TCGA-AA-A010-01 4 83827713 83827713 T G THAP9 Missense_Mutation p.I171M 0.37 deleterious(0.01) probably_damaging(0.926) TCGA-AA-A010-01 4 83838260 83838260 T G THAP9 Missense_Mutation p.L299V 0.38 deleterious(0.01) benign(0.355) TCGA-AA-A010-01 4 84231969 84231969 G T HPSE Missense_Mutation p.H250N 0.41 deleterious(0.01) benign(0.315) TCGA-AA-A010-01 4 84350880 84350880 T C HELQ Missense_Mutation p.D772G 0.41 deleterious(0.03) benign(0.019) TCGA-AA-A010-01 4 84376515 84376515 A C HELQ Intron 0.34 TCGA-AA-A010-01 4 84391408 84391408 C A FAM175A Nonsense_Mutation p.E142* 0.32 TCGA-AA-A010-01 4 84519836 84519836 T C AGPAT9 Missense_Mutation p.S389P 0.42 deleterious(0.01) possibly_damaging(0.823) TCGA-AA-A010-01 4 85419292 85419292 C A NKX6-1 Missense_Mutation p.E30D 0.32 deleterious(0.01) benign(0.217) TCGA-AA-A010-01 4 85556435 85556435 A G CDS1 Silent p.S247S 0.49 TCGA-AA-A010-01 4 85612867 85612867 G T WDFY3 Missense_Mutation p.L3041I 0.42 deleterious(0.01) probably_damaging(0.967) TCGA-AA-A010-01 4 85623552 85623552 G T WDFY3 Missense_Mutation p.F2850L 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 85634389 85634389 A T WDFY3 Missense_Mutation p.F2655L 0.39 tolerated(0.11) benign(0.147) TCGA-AA-A010-01 4 85711007 85711007 G A WDFY3 Missense_Mutation p.R1181C 0.35 deleterious(0) benign(0.24) TCGA-AA-A010-01 4 85750273 85750273 G A WDFY3 Silent p.V280V 0.39 TCGA-AA-A010-01 4 85771108 85771108 A T WDFY3 Missense_Mutation p.V84D 0.40 deleterious(0) probably_damaging(0.984) TCGA-AA-A010-01 4 8607726 8607726 G T CPZ Missense_Mutation p.E240D 0.37 deleterious(0.01) probably_damaging(0.967) TCGA-AA-A010-01 4 8620231 8620231 G T CPZ Missense_Mutation p.G527C 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 86287 86287 G T Z95704.2 RNA 0.40 TCGA-AA-A010-01 4 86863222 86863222 T C ARHGAP24 Missense_Mutation p.I132T 0.38 deleterious(0.01) possibly_damaging(0.829) TCGA-AA-A010-01 4 86988942 86988942 C A MAPK10 Missense_Mutation p.E323D 0.34 tolerated(0.18) benign(0.006) TCGA-AA-A010-01 4 87061 87061 A T Z95704.2 RNA 0.42 TCGA-AA-A010-01 4 87671632 87671632 C T PTPN13 Missense_Mutation p.S887L 0.34 tolerated(0.13) probably_damaging(0.981) TCGA-AA-A010-01 4 87692602 87692602 T C PTPN13 Silent p.H1699H 0.33 TCGA-AA-A010-01 4 88584026 88584026 G T DMP1 Missense_Mutation p.D366Y 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 4 88989098 88989098 C T PKD2 Nonsense_Mutation p.R803* 0.53 TCGA-AA-A010-01 4 89013397 89013397 T C ABCG2 Missense_Mutation p.K653E 0.37 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 4 89034593 89034593 A T ABCG2 Silent p.L352L 0.36 TCGA-AA-A010-01 4 89052305 89052305 G A ABCG2 Missense_Mutation p.R147W 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 4 89183743 89183743 G A PPM1K 3'UTR 0.36 TCGA-AA-A010-01 4 89349834 89349834 C T HERC6 Missense_Mutation p.R680C 0.10 deleterious(0) benign(0.28) TCGA-AA-A010-01 4 89397143 89397143 T G HERC5 Missense_Mutation p.V515G 0.38 deleterious(0) benign(0.034) TCGA-AA-A010-01 4 89415460 89415460 G T HERC5 Nonsense_Mutation p.E808* 0.25 TCGA-AA-A010-01 4 89978170 89978170 G A FAM13A 5'UTR 0.40 TCGA-AA-A010-01 4 90169210 90169210 G A GPRIN3 Silent p.V684V 0.39 TCGA-AA-A010-01 4 90848968 90848968 T G MMRN1 Missense_Mutation p.D326E 0.41 tolerated(1) benign(0.004) TCGA-AA-A010-01 4 90849086 90849086 G T MMRN1 Missense_Mutation p.D366Y 0.37 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 4 90849098 90849098 G T MMRN1 Nonsense_Mutation p.E370* 0.33 TCGA-AA-A010-01 4 90856341 90856341 G T MMRN1 Nonsense_Mutation p.E504* 0.35 TCGA-AA-A010-01 4 90857607 90857607 G A MMRN1 Missense_Mutation p.E926K 0.40 tolerated(0.05) benign(0.016) TCGA-AA-A010-01 4 90857868 90857868 G A MMRN1 Missense_Mutation p.A1013T 0.51 tolerated(0.68) benign(0.001) TCGA-AA-A010-01 4 91389459 91389459 G T CCSER1 Nonsense_Mutation p.E560* 0.29 TCGA-AA-A010-01 4 94145832 94145832 A G GRID2 Missense_Mutation p.D344G 0.37 tolerated(0.1) benign(0.431) TCGA-AA-A010-01 4 945033 945033 C T TMEM175 Missense_Mutation p.A110V 0.38 tolerated(0.37) benign(0.331) TCGA-AA-A010-01 4 94751008 94751008 T G ATOH1 Missense_Mutation p.L311V 0.36 tolerated(0.15) possibly_damaging(0.675) TCGA-AA-A010-01 4 95155158 95155158 G T SMARCAD1 Missense_Mutation p.R141I 0.34 tolerated_low_confidence(0.46) benign(0.053) TCGA-AA-A010-01 4 95199848 95199848 C A SMARCAD1 Missense_Mutation p.L754I 0.37 deleterious(0.01) benign(0.372) TCGA-AA-A010-01 4 95201850 95201850 C A SMARCAD1 Missense_Mutation p.N844K 0.32 tolerated(0.41) benign(0.001) TCGA-AA-A010-01 4 95201860 95201860 G T SMARCAD1 Missense_Mutation p.D848Y 0.32 deleterious(0) probably_damaging(0.917) TCGA-AA-A010-01 4 952322 952322 A G TMEM175 3'UTR 0.41 TCGA-AA-A010-01 4 96069996 96069996 T G BMPR1B Missense_Mutation p.F422V 0.38 deleterious(0) possibly_damaging(0.795) TCGA-AA-A010-01 4 96090365 96090365 T G UNC5C 3'UTR 0.32 TCGA-AA-A010-01 4 96123988 96123988 G A UNC5C Missense_Mutation p.A677V 0.37 deleterious(0.04) benign(0.018) TCGA-AA-A010-01 4 961405 961405 C T DGKQ Missense_Mutation p.D307N 0.44 tolerated(0.32) probably_damaging(0.995) TCGA-AA-A010-01 4 96199414 96199414 G T UNC5C Missense_Mutation p.A197D 0.41 deleterious(0) benign(0.208) TCGA-AA-A010-01 4 96761281 96761281 C A PDHA2 5'UTR 0.39 TCGA-AA-A010-01 4 96761892 96761892 G A PDHA2 Silent p.A197A 0.42 TCGA-AA-A010-01 4 99064247 99064247 C T STPG2 Missense_Mutation p.A19T 0.32 tolerated(0.4) benign(0.108) TCGA-AA-A010-01 4 99355178 99355178 T G RAP1GDS1 Missense_Mutation p.L512R 0.32 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 4 99403203 99403203 G T TSPAN5 Silent p.R135R 0.40 TCGA-AA-A010-01 4 9943665 9943665 C A SLC2A9 Missense_Mutation p.S229I 0.31 deleterious(0.01) possibly_damaging(0.836) TCGA-AA-A010-01 4 99579358 99579358 T G TSPAN5 Missense_Mutation p.K7T 0.37 tolerated(0.38) benign(0.185) TCGA-AA-A010-01 5 100147520 100147520 G T ST8SIA4 3'UTR 0.40 TCGA-AA-A010-01 5 100147758 100147758 G T ST8SIA4 Missense_Mutation p.F291L 0.35 benign(0.015) TCGA-AA-A010-01 5 100191996 100191996 C T ST8SIA4 Missense_Mutation p.R203Q 0.35 benign(0.136) TCGA-AA-A010-01 5 100192065 100192065 T G ST8SIA4 Missense_Mutation p.D180A 0.41 possibly_damaging(0.656) TCGA-AA-A010-01 5 100231359 100231359 T G ST8SIA4 Silent p.R82R 0.27 TCGA-AA-A010-01 5 101575005 101575005 G T SLCO4C1 Missense_Mutation p.A655D 0.32 deleterious(0) probably_damaging(0.965) TCGA-AA-A010-01 5 101755638 101755638 A G SLCO6A1 Missense_Mutation p.M455T 0.26 deleterious(0) probably_damaging(0.984) TCGA-AA-A010-01 5 101834355 101834355 C T SLCO6A1 Missense_Mutation p.R65Q 0.38 tolerated(0.69) benign(0.011) TCGA-AA-A010-01 5 101834423 101834423 C T SLCO6A1 Silent p.S42S 0.41 TCGA-AA-A010-01 5 102309960 102309960 C A PAM Missense_Mutation p.L435I 0.34 deleterious(0.04) probably_damaging(0.979) TCGA-AA-A010-01 5 102355501 102355501 A G PAM Silent p.E813E 0.42 TCGA-AA-A010-01 5 102423619 102423619 G A GIN1 Missense_Mutation p.L518F 0.28 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-AA-A010-01 5 102508931 102508931 C T PPIP5K2 Missense_Mutation p.R787C 0.32 deleterious(0) probably_damaging(0.921) TCGA-AA-A010-01 5 10256073 10256073 C A CCT5 Missense_Mutation p.A113D 0.29 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 5 102611630 102611630 G A C5orf30 Missense_Mutation p.D4N 0.32 tolerated_low_confidence(0.06) probably_damaging(0.99) TCGA-AA-A010-01 5 10378927 10378927 G T MARCH6 Missense_Mutation p.R58I 0.33 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 5 107703615 107703615 C T FBXL17 Missense_Mutation p.A345T 0.25 deleterious(0) possibly_damaging(0.906) TCGA-AA-A010-01 5 108380493 108380493 C T FER Missense_Mutation p.A609V 0.41 deleterious(0) possibly_damaging(0.874) TCGA-AA-A010-01 5 108521974 108521974 T C FER Silent p.C759C 0.41 TCGA-AA-A010-01 5 108672863 108672863 T C PJA2 3'UTR 0.48 TCGA-AA-A010-01 5 108714956 108714956 C T PJA2 Splice_Site p.X78_splice 0.32 TCGA-AA-A010-01 5 109026117 109026117 A C MAN2A1 5'UTR 0.35 TCGA-AA-A010-01 5 109120470 109120470 G A MAN2A1 Missense_Mutation p.A535T 0.57 tolerated(0.19) possibly_damaging(0.894) TCGA-AA-A010-01 5 109202788 109202788 C A MAN2A1 3'UTR 0.38 TCGA-AA-A010-01 5 109978002 109978002 C A TMEM232 Nonsense_Mutation p.E66* 0.37 TCGA-AA-A010-01 5 110003066 110003066 C A TMEM232 Splice_Site 0.32 TCGA-AA-A010-01 5 110428069 110428069 G T WDR36 Missense_Mutation p.R28M 0.39 deleterious_low_confidence(0) benign(0.018) TCGA-AA-A010-01 5 110730452 110730452 C T CAMK4 Missense_Mutation p.A144V 0.28 tolerated(1) possibly_damaging(0.585) TCGA-AA-A010-01 5 110819882 110819882 C T CAMK4 Silent p.G380G 0.29 TCGA-AA-A010-01 5 11082937 11082937 C T CTNND2 Missense_Mutation p.A887T 0.43 tolerated(0.19) possibly_damaging(0.857) TCGA-AA-A010-01 5 11117571 11117571 G A CTNND2 Silent p.I756I 0.37 TCGA-AA-A010-01 5 112090592 112090592 C A APC Missense_Mutation p.A2D 0.41 probably_damaging(0.987) TCGA-AA-A010-01 5 112163669 112163669 C T APC Missense_Mutation p.A531V 0.31 possibly_damaging(0.649) TCGA-AA-A010-01 5 112164616 112164616 C T APC Nonsense_Mutation p.R564* 0.30 TCGA-AA-A010-01 5 112170665 112170665 C T APC Silent p.S587S 0.42 TCGA-AA-A010-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.40 TCGA-AA-A010-01 5 112176277 112176277 C T APC Silent p.I1662I 0.42 TCGA-AA-A010-01 5 112178577 112178577 C T APC Missense_Mutation p.S2429F 0.38 probably_damaging(1) TCGA-AA-A010-01 5 112418587 112418587 T A MCC Missense_Mutation p.E585V 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 5 112769820 112769820 C T TSSK1B Silent p.K239K 0.43 TCGA-AA-A010-01 5 112770407 112770407 C T TSSK1B Missense_Mutation p.D44N 0.39 tolerated(0.36) benign(0.183) TCGA-AA-A010-01 5 112770520 112770520 A G TSSK1B Missense_Mutation p.V6A 0.34 deleterious(0.04) benign(0.103) TCGA-AA-A010-01 5 112770704 112770704 C A TSSK1B 5'UTR 0.29 TCGA-AA-A010-01 5 112884292 112884292 G A YTHDC2 Missense_Mutation p.R517H 0.19 deleterious(0.03) benign(0.159) TCGA-AA-A010-01 5 112889319 112889319 G A YTHDC2 Missense_Mutation p.E634K 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-AA-A010-01 5 11346569 11346569 G T CTNND2 Missense_Mutation p.P515T 0.36 tolerated(0.05) benign(0.028) TCGA-AA-A010-01 5 113831789 113831789 C T KCNN2 Silent p.H550H 0.41 TCGA-AA-A010-01 5 115152119 115152119 C T CDO1 5'UTR 0.35 TCGA-AA-A010-01 5 115177764 115177764 C A AP3S1 Missense_Mutation p.N10K 0.06 deleterious(0.04) possibly_damaging(0.714) TCGA-AA-A010-01 5 115320353 115320353 G A AQPEP Missense_Mutation p.A309T 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 115346532 115346532 T G AQPEP Missense_Mutation p.L730V 0.27 tolerated(0.05) probably_damaging(0.936) TCGA-AA-A010-01 5 115351418 115351418 C T AQPEP Silent p.V904V 0.40 TCGA-AA-A010-01 5 118485664 118485664 G A DMXL1 Missense_Mutation p.S1381N 0.52 deleterious(0.03) probably_damaging(0.953) TCGA-AA-A010-01 5 118729012 118729012 T G TNFAIP8 Missense_Mutation p.F178C 0.28 tolerated(0.36) probably_damaging(0.919) TCGA-AA-A010-01 5 118965387 118965387 G A FAM170A 5'UTR 0.46 TCGA-AA-A010-01 5 118968500 118968500 G A FAM170A Missense_Mutation p.G43D 0.39 tolerated(0.22) benign(0.006) TCGA-AA-A010-01 5 121362890 121362890 C A SRFBP1 3'UTR 0.31 TCGA-AA-A010-01 5 121488283 121488283 A G ZNF474 Missense_Mutation p.N200D 0.40 tolerated(0.27) benign(0.006) TCGA-AA-A010-01 5 121786917 121786917 C T SNCAIP Missense_Mutation p.A792V 0.52 deleterious(0) possibly_damaging(0.885) TCGA-AA-A010-01 5 122139298 122139298 G T SNX2 Missense_Mutation p.K211N 0.29 deleterious(0) probably_damaging(0.974) TCGA-AA-A010-01 5 1222159 1222159 G A SLC6A19 3'UTR 0.39 TCGA-AA-A010-01 5 122685653 122685653 C A CEP120 Missense_Mutation p.R904I 0.34 deleterious(0) possibly_damaging(0.866) TCGA-AA-A010-01 5 122722225 122722225 C A CEP120 Missense_Mutation p.D523Y 0.43 deleterious(0) possibly_damaging(0.578) TCGA-AA-A010-01 5 122729173 122729173 T C CEP120 Missense_Mutation p.K211E 0.49 deleterious(0.01) possibly_damaging(0.489) TCGA-AA-A010-01 5 125801098 125801098 C T GRAMD3 Intron 0.36 TCGA-AA-A010-01 5 125828609 125828609 A G GRAMD3 Missense_Mutation p.I435M 0.37 deleterious(0) possibly_damaging(0.863) TCGA-AA-A010-01 5 125960530 125960530 C A PHAX Silent p.I393I 0.53 TCGA-AA-A010-01 5 125971872 125971872 C T C5orf48 Missense_Mutation p.S115L 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 5 126154710 126154710 A C LMNB1 Missense_Mutation p.M346L 0.34 tolerated(0.07) benign(0.009) TCGA-AA-A010-01 5 126771138 126771138 T G MEGF10 Silent p.S687S 0.39 TCGA-AA-A010-01 5 126993319 126993319 C A CTXN3 Missense_Mutation p.L36M 0.34 tolerated(0.1) possibly_damaging(0.865) TCGA-AA-A010-01 5 127611839 127611839 G A FBN2 Silent p.C2495C 0.35 TCGA-AA-A010-01 5 127671155 127671155 G A FBN2 Missense_Mutation p.S1280L 0.35 deleterious(0) benign(0.322) TCGA-AA-A010-01 5 127866386 127866386 G A FBN2 Missense_Mutation p.P113L 0.35 deleterious(0) unknown(0) TCGA-AA-A010-01 5 128301799 128301799 G A SLC27A6 5'UTR 0.37 TCGA-AA-A010-01 5 128990051 128990051 T G ADAMTS19 Silent p.L737L 0.39 TCGA-AA-A010-01 5 129070782 129070782 C T ADAMTS19 Missense_Mutation p.T1151I 0.40 deleterious(0.01) probably_damaging(0.979) TCGA-AA-A010-01 5 129521032 129521032 G T CHSY3 Missense_Mutation p.D733Y 0.36 tolerated(0.57) possibly_damaging(0.652) TCGA-AA-A010-01 5 130695025 130695025 G A CDC42SE2 5'UTR 0.48 TCGA-AA-A010-01 5 130799875 130799875 G T RAPGEF6 Missense_Mutation p.A780D 0.37 deleterious(0) possibly_damaging(0.833) TCGA-AA-A010-01 5 131539541 131539541 C T P4HA2 Splice_Site p.X384_splice 0.37 TCGA-AA-A010-01 5 131606778 131606779 - C PDLIM4 Frame_Shift_Ins p.S169Qfs*3 0.22 TCGA-AA-A010-01 5 131607758 131607758 G A PDLIM4 Missense_Mutation p.E277K 0.37 deleterious(0.02) probably_damaging(0.951) TCGA-AA-A010-01 5 131944842 131944842 C A RAD50 Missense_Mutation p.H955N 0.36 tolerated(0.75) benign(0) TCGA-AA-A010-01 5 132015484 132015484 C T IL4 Missense_Mutation p.R88C 0.37 tolerated(0.05) possibly_damaging(0.794) TCGA-AA-A010-01 5 132037825 132037825 C T KIF3A Missense_Mutation p.R586Q 0.34 tolerated(0.51) benign(0.004) TCGA-AA-A010-01 5 132073189 132073189 C T KIF3A 5'UTR 0.36 TCGA-AA-A010-01 5 132160744 132160744 T G SHROOM1 Missense_Mutation p.T334P 0.35 tolerated(0.3) benign(0.003) TCGA-AA-A010-01 5 1322999 1322999 G A CLPTM1L Silent p.F436F 0.44 TCGA-AA-A010-01 5 133536763 133536763 G T PPP2CA Silent p.I163I 0.42 TCGA-AA-A010-01 5 133996964 133996964 A C SEC24A Missense_Mutation p.T85P 0.38 tolerated_low_confidence(0.07) possibly_damaging(0.776) TCGA-AA-A010-01 5 134007549 134007549 G A SEC24A Missense_Mutation p.D264N 0.33 deleterious(0) benign(0.409) TCGA-AA-A010-01 5 134041031 134041031 C T SEC24A Missense_Mutation p.R819C 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 134102657 134102657 G A DDX46 Missense_Mutation p.R86Q 0.46 tolerated(0.44) unknown(0) TCGA-AA-A010-01 5 134113269 134113269 G A DDX46 Missense_Mutation p.E207K 0.38 tolerated(0.05) benign(0) TCGA-AA-A010-01 5 134191193 134191193 G T C5orf24 3'UTR 0.36 TCGA-AA-A010-01 5 134195000 134195000 T G C5orf24 3'UTR 0.36 TCGA-AA-A010-01 5 134305691 134305691 T G CATSPER3 Missense_Mutation p.I54R 0.42 tolerated(0.14) possibly_damaging(0.467) TCGA-AA-A010-01 5 134705828 134705828 C T H2AFY Silent p.E59E 0.49 TCGA-AA-A010-01 5 135388645 135388645 C T TGFBI Silent p.I321I 0.32 TCGA-AA-A010-01 5 135496780 135496780 T C SMAD5 Silent p.S213S 0.37 TCGA-AA-A010-01 5 135587449 135587449 G A TRPC7 Silent p.R489R 0.38 TCGA-AA-A010-01 5 135692834 135692834 G T TRPC7 Missense_Mutation p.A81D 0.34 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 5 137013247 137013247 G T KLHL3 Missense_Mutation p.S208Y 0.29 deleterious(0.01) possibly_damaging(0.579) TCGA-AA-A010-01 5 137089888 137089888 G T HNRNPA0 5'UTR 0.44 TCGA-AA-A010-01 5 137244497 137244497 C A PKD2L2 Nonsense_Mutation p.S397* 0.41 TCGA-AA-A010-01 5 137284652 137284652 C A FAM13B Missense_Mutation p.D696Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 137426386 137426386 C T WNT8A Missense_Mutation p.A227V 0.37 tolerated(0.1) benign(0.324) TCGA-AA-A010-01 5 137474373 137474373 T C NME5 Missense_Mutation p.I33V 0.39 tolerated(0.38) benign(0.02) TCGA-AA-A010-01 5 137520605 137520605 A G KIF20A Missense_Mutation p.E598G 0.29 deleterious(0.01) possibly_damaging(0.484) TCGA-AA-A010-01 5 137525534 137525534 C A CDC23 Missense_Mutation p.D496Y 0.28 deleterious(0) possibly_damaging(0.669) TCGA-AA-A010-01 5 137528191 137528191 A C CDC23 Splice_Site p.X389_splice 0.33 TCGA-AA-A010-01 5 137625208 137625208 C A CDC25C Missense_Mutation p.K303N 0.34 deleterious(0) possibly_damaging(0.907) TCGA-AA-A010-01 5 137726766 137726766 C A KDM3B Missense_Mutation p.P482H 0.37 deleterious_low_confidence(0.01) benign(0.319) TCGA-AA-A010-01 5 137727110 137727110 T A KDM3B Missense_Mutation p.S597T 0.40 tolerated_low_confidence(0.19) benign(0.108) TCGA-AA-A010-01 5 137756608 137756608 A G KDM3B Missense_Mutation p.D1310G 0.47 deleterious(0) benign(0.142) TCGA-AA-A010-01 5 137765569 137765569 T G KDM3B Missense_Mutation p.I1603S 0.23 deleterious(0) benign(0.417) TCGA-AA-A010-01 5 138160287 138160287 G A CTNNA1 Silent p.P219P 0.38 TCGA-AA-A010-01 5 13820543 13820543 C T DNAH5 Silent p.T2251T 0.43 TCGA-AA-A010-01 5 138261054 138261054 T C CTNNA1 Silent p.Y619Y 0.34 TCGA-AA-A010-01 5 138269768 138269768 A G CTNNA1 Missense_Mutation p.D904G 0.50 deleterious(0.01) possibly_damaging(0.451) TCGA-AA-A010-01 5 13850782 13850782 A G DNAH5 Missense_Mutation p.I1698T 0.36 benign(0.415) TCGA-AA-A010-01 5 13850872 13850872 C A DNAH5 Missense_Mutation p.R1668L 0.32 possibly_damaging(0.569) TCGA-AA-A010-01 5 13862815 13862815 T C DNAH5 Silent p.Q1546Q 0.36 TCGA-AA-A010-01 5 138643996 138643996 T G MATR3 Missense_Mutation p.L298V 0.42 tolerated(0.14) benign(0.006) TCGA-AA-A010-01 5 13864623 13864623 C T DNAH5 Silent p.E1493E 0.35 TCGA-AA-A010-01 5 138654715 138654715 G T MATR3 Missense_Mutation p.R476I 0.40 tolerated(0.21) probably_damaging(0.974) TCGA-AA-A010-01 5 13868096 13868096 A C DNAH5 Silent p.S1280S 0.33 TCGA-AA-A010-01 5 138717666 138717666 C T SLC23A1 Missense_Mutation p.D75N 0.36 tolerated(0.21) benign(0.026) TCGA-AA-A010-01 5 13876927 13876927 C A DNAH5 Splice_Site p.X1088_splice 0.27 TCGA-AA-A010-01 5 13883178 13883178 C A DNAH5 Missense_Mutation p.K1003N 0.37 benign(0.004) TCGA-AA-A010-01 5 13920716 13920716 C T DNAH5 Missense_Mutation p.R224Q 0.33 benign(0) TCGA-AA-A010-01 5 139216544 139216544 G A PSD2 Missense_Mutation p.V518I 0.39 tolerated(0.37) benign(0.055) TCGA-AA-A010-01 5 139680081 139680081 C T PFDN1 Silent p.T40T 0.35 TCGA-AA-A010-01 5 139715545 139715545 T C HBEGF Missense_Mutation p.T156A 0.37 tolerated(0.52) benign(0.022) TCGA-AA-A010-01 5 139820661 139820661 G T ANKHD1 Missense_Mutation p.G283C 0.36 unknown(0) TCGA-AA-A010-01 5 139889762 139889762 G A ANKHD1 Missense_Mutation p.R1367H 0.43 possibly_damaging(0.812) TCGA-AA-A010-01 5 139919049 139919049 C A ANKHD1 Intron 0.51 TCGA-AA-A010-01 5 140023377 140023377 G A TMCO6 Missense_Mutation p.V311M 0.47 deleterious(0.01) probably_damaging(0.977) TCGA-AA-A010-01 5 140166855 140166855 G T PCDHA1 Missense_Mutation p.S327I 0.35 tolerated_low_confidence(0.41) benign(0.001) TCGA-AA-A010-01 5 140167171 140167171 G A PCDHA1 Silent p.S432S 0.41 TCGA-AA-A010-01 5 140167384 140167384 G A PCDHA1 Silent p.A503A 0.34 TCGA-AA-A010-01 5 140175117 140175117 G A PCDHA2 Missense_Mutation p.E190K 0.38 tolerated_low_confidence(1) benign(0) TCGA-AA-A010-01 5 140175632 140175632 G T PCDHA2 Missense_Mutation p.E361D 0.41 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A010-01 5 140176266 140176266 G A PCDHA2 Missense_Mutation p.A573T 0.40 tolerated_low_confidence(0.19) benign(0.007) TCGA-AA-A010-01 5 140176744 140176744 G A PCDHA2 Missense_Mutation p.R732H 0.40 deleterious_low_confidence(0.02) benign(0.001) TCGA-AA-A010-01 5 140180927 140180927 G A PCDHA3 Missense_Mutation p.A49T 0.37 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-AA-A010-01 5 140181333 140181333 G T PCDHA3 Missense_Mutation p.R184I 0.30 tolerated_low_confidence(0.08) benign(0.028) TCGA-AA-A010-01 5 140202933 140202933 G A PCDHA5 Missense_Mutation p.E525K 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A010-01 5 140208802 140208802 G A PCDHA6 Missense_Mutation p.D376N 0.37 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-AA-A010-01 5 140209906 140209906 G A PCDHA6 Missense_Mutation p.A744T 0.37 tolerated_low_confidence(0.07) benign(0.16) TCGA-AA-A010-01 5 140214926 140214926 G T PCDHA7 Missense_Mutation p.V320F 0.17 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-AA-A010-01 5 140215899 140215899 G A PCDHA7 Missense_Mutation p.R644H 0.41 deleterious_low_confidence(0.02) benign(0.209) TCGA-AA-A010-01 5 140222794 140222794 G A PCDHA8 Missense_Mutation p.E630K 0.40 deleterious_low_confidence(0.02) probably_damaging(0.948) TCGA-AA-A010-01 5 140230052 140230052 G A PCDHA9 Missense_Mutation p.A658T 0.43 deleterious_low_confidence(0.05) benign(0.035) TCGA-AA-A010-01 5 140231130 140231130 G A PCDHA9 Intron 0.43 TCGA-AA-A010-01 5 140231761 140231761 A C PCDHA9 Intron 0.37 TCGA-AA-A010-01 5 140235780 140235780 G T PCDHA10 Missense_Mutation p.Q49H 0.32 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-AA-A010-01 5 140249499 140249499 G A PCDHA11 Missense_Mutation p.E271K 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.645) TCGA-AA-A010-01 5 140255868 140255868 G A PCDHA12 Missense_Mutation p.E271K 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.551) TCGA-AA-A010-01 5 140263503 140263503 G A PCDHA13 Silent p.T550T 0.40 TCGA-AA-A010-01 5 140307492 140307492 G A PCDHAC1 Missense_Mutation p.E339K 0.37 deleterious(0) possibly_damaging(0.492) TCGA-AA-A010-01 5 140346930 140346930 C T PCDHAC2 Silent p.F193F 0.35 TCGA-AA-A010-01 5 140474846 140474846 C T PCDHB2 Missense_Mutation p.R158C 0.36 tolerated_low_confidence(0.18) benign(0.035) TCGA-AA-A010-01 5 140476730 140476730 G A PCDHB2 Missense_Mutation p.E786K 0.36 tolerated_low_confidence(0.17) benign(0.021) TCGA-AA-A010-01 5 140476743 140476743 G A PCDHB2 Missense_Mutation p.S790N 0.34 tolerated_low_confidence(0.93) benign(0.001) TCGA-AA-A010-01 5 140481185 140481185 G A PCDHB3 Missense_Mutation p.D318N 0.35 tolerated_low_confidence(0.81) benign(0.001) TCGA-AA-A010-01 5 140482844 140482844 G A PCDHB3 3'UTR 0.39 TCGA-AA-A010-01 5 140502384 140502384 A C PCDHB4 Silent p.I268I 0.31 TCGA-AA-A010-01 5 140503952 140503952 G A PCDHB4 Missense_Mutation p.S791N 0.32 tolerated_low_confidence(0.13) benign(0.013) TCGA-AA-A010-01 5 140503993 140503993 G A PCDHB4 3'UTR 0.31 TCGA-AA-A010-01 5 140515167 140515167 G T PCDHB5 Missense_Mutation p.D51Y 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AA-A010-01 5 140516233 140516233 G T PCDHB5 Missense_Mutation p.R406I 0.38 deleterious_low_confidence(0.04) benign(0.008) TCGA-AA-A010-01 5 140516479 140516479 C T PCDHB5 Missense_Mutation p.S488L 0.32 deleterious_low_confidence(0) benign(0.112) TCGA-AA-A010-01 5 140517702 140517702 T G PCDHB5 3'UTR 0.33 TCGA-AA-A010-01 5 140530442 140530442 G A PCDHB6 Missense_Mutation p.E202K 0.39 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 5 140531677 140531677 C T PCDHB6 Silent p.F613F 0.41 TCGA-AA-A010-01 5 140532290 140532290 C A PCDHB6 3'UTR 0.35 TCGA-AA-A010-01 5 140537045 140537045 C T PCDHB17 Missense_Mutation p.S490L 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.511) TCGA-AA-A010-01 5 140552652 140552652 C T PCDHB7 Missense_Mutation p.S79L 0.36 tolerated_low_confidence(0.7) benign(0.005) TCGA-AA-A010-01 5 140554360 140554360 C T PCDHB7 Silent p.G648G 0.38 TCGA-AA-A010-01 5 140558122 140558122 G T PCDHB8 Missense_Mutation p.E169D 0.38 deleterious_low_confidence(0.03) benign(0.003) TCGA-AA-A010-01 5 140558125 140558125 C A PCDHB8 Missense_Mutation p.N170K 0.36 tolerated_low_confidence(0.1) benign(0.003) TCGA-AA-A010-01 5 140558873 140558873 G A PCDHB8 Missense_Mutation p.V420I 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-AA-A010-01 5 140564268 140564268 C T PCDHB16 Missense_Mutation p.R712W 0.39 deleterious_low_confidence(0.01) benign(0.066) TCGA-AA-A010-01 5 140572253 140572253 C A PCDHB10 Missense_Mutation p.S43Y 0.36 tolerated_low_confidence(0.15) benign(0.297) TCGA-AA-A010-01 5 140572991 140572991 G A PCDHB10 Missense_Mutation p.R289Q 0.43 tolerated_low_confidence(0.35) benign(0.003) TCGA-AA-A010-01 5 140579644 140579644 C T PCDHB11 Silent p.I99I 0.40 TCGA-AA-A010-01 5 140579990 140579990 C A PCDHB11 Missense_Mutation p.L215M 0.37 tolerated_low_confidence(0.06) benign(0.34) TCGA-AA-A010-01 5 140580080 140580080 G A PCDHB11 Missense_Mutation p.A245T 0.33 tolerated_low_confidence(0.52) benign(0.004) TCGA-AA-A010-01 5 140588928 140588928 C T PCDHB12 Missense_Mutation p.A150V 0.39 deleterious_low_confidence(0) benign(0.047) TCGA-AA-A010-01 5 140589058 140589058 G A PCDHB12 Silent p.E193E 0.34 TCGA-AA-A010-01 5 140595783 140595783 G A PCDHB13 Silent p.S696S 0.49 TCGA-AA-A010-01 5 140604130 140604130 G A PCDHB14 Silent p.S351S 0.45 TCGA-AA-A010-01 5 140616204 140616204 C T PCDHB18 RNA 0.25 TCGA-AA-A010-01 5 140626087 140626087 C T PCDHB15 Missense_Mutation p.S314L 0.34 deleterious_low_confidence(0.04) benign(0.043) TCGA-AA-A010-01 5 140682699 140682699 T G SLC25A2 Missense_Mutation p.K245T 0.38 tolerated(0.16) possibly_damaging(0.799) TCGA-AA-A010-01 5 140698684 140698684 C T TAF7 Missense_Mutation p.E310K 0.39 deleterious(0.02) benign(0.23) TCGA-AA-A010-01 5 140710437 140710437 C T PCDHGA1 Silent p.G62G 0.44 TCGA-AA-A010-01 5 140710682 140710682 A C PCDHGA1 Missense_Mutation p.E144A 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A010-01 5 140719086 140719086 G A PCDHGA2 Missense_Mutation p.R183Q 0.45 tolerated_low_confidence(1) benign(0.052) TCGA-AA-A010-01 5 140719842 140719842 A G PCDHGA2 Missense_Mutation p.D435G 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.703) TCGA-AA-A010-01 5 140720426 140720426 C T PCDHGA2 Nonsense_Mutation p.R630* 0.52 TCGA-AA-A010-01 5 140730713 140730713 G A PCDHGB1 Missense_Mutation p.D296N 0.35 tolerated(0.05) possibly_damaging(0.589) TCGA-AA-A010-01 5 140740020 140740020 C T PCDHGB2 Silent p.F106F 0.40 TCGA-AA-A010-01 5 140754024 140754024 A G PCDHGA6 Missense_Mutation p.D125G 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A010-01 5 140764119 140764119 C T PCDHGA7 Silent p.F551F 0.37 TCGA-AA-A010-01 5 140772933 140772933 G T PCDHGA8 Nonsense_Mutation p.G185* 0.31 TCGA-AA-A010-01 5 140774266 140774266 C T PCDHGA8 Missense_Mutation p.A629V 0.40 deleterious_low_confidence(0.04) benign(0.186) TCGA-AA-A010-01 5 140788609 140788609 C A PCDHGB6 Nonsense_Mutation p.Y280* 0.39 TCGA-AA-A010-01 5 140788781 140788781 C A PCDHGB6 Missense_Mutation p.L338I 0.43 tolerated(0.12) benign(0.236) TCGA-AA-A010-01 5 140789634 140789634 G A PCDHGB6 Missense_Mutation p.R622H 0.31 tolerated(0.88) benign(0.344) TCGA-AA-A010-01 5 140789916 140789916 G A PCDHGB6 Missense_Mutation p.R716Q 0.36 tolerated(0.06) benign(0.185) TCGA-AA-A010-01 5 140793053 140793053 C T PCDHGA10 Missense_Mutation p.A104V 0.46 tolerated_low_confidence(0.11) benign(0.041) TCGA-AA-A010-01 5 140798684 140798684 G A PCDHGB7 Missense_Mutation p.V420I 0.42 tolerated(1) benign(0.182) TCGA-AA-A010-01 5 140803008 140803008 G A PCDHGA11 Silent p.T738T 0.32 TCGA-AA-A010-01 5 140807451 140807451 G A PCDHGB6 Intron 0.36 TCGA-AA-A010-01 5 140866864 140866864 C T PCDHGC4 Silent p.F708F 0.37 TCGA-AA-A010-01 5 141050899 141050899 G T ARAP3 Silent p.A641A 0.38 TCGA-AA-A010-01 5 141050927 141050927 T C ARAP3 Missense_Mutation p.N632S 0.39 deleterious(0.03) benign(0.01) TCGA-AA-A010-01 5 1411367 1411367 G A SLC6A3 Silent p.I420I 0.27 TCGA-AA-A010-01 5 141336689 141336689 G A PCDH12 Missense_Mutation p.A243V 0.41 tolerated(1) benign(0) TCGA-AA-A010-01 5 141511397 141511397 G T NDFIP1 Nonsense_Mutation p.E30* 0.33 TCGA-AA-A010-01 5 141993589 141993589 C T FGF1 Missense_Mutation p.G35D 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 142780379 142780379 G T NR3C1 Missense_Mutation p.P9H 0.38 deleterious_low_confidence(0) possibly_damaging(0.572) TCGA-AA-A010-01 5 14287144 14287144 A C TRIO Missense_Mutation p.N171T 0.37 probably_damaging(0.992) TCGA-AA-A010-01 5 14336771 14336771 C T TRIO Missense_Mutation p.R661W 0.39 probably_damaging(0.979) TCGA-AA-A010-01 5 14477049 14477049 C A TRIO Missense_Mutation p.L2044I 0.31 benign(0.122) TCGA-AA-A010-01 5 14504649 14504649 C T TRIO Silent p.V2853V 0.36 TCGA-AA-A010-01 5 14508315 14508315 C T TRIO Silent p.F3026F 0.43 TCGA-AA-A010-01 5 145197617 145197617 C T PRELID2 Missense_Mutation p.V82M 0.32 tolerated(0.11) benign(0.091) TCGA-AA-A010-01 5 145532781 145532781 C T LARS Missense_Mutation p.A414T 0.30 tolerated(0.13) benign(0.001) TCGA-AA-A010-01 5 145537189 145537189 C T LARS Missense_Mutation p.G281D 0.37 tolerated(0.62) benign(0.003) TCGA-AA-A010-01 5 145557224 145557224 C A LARS Missense_Mutation p.R4I 0.37 deleterious(0) possibly_damaging(0.861) TCGA-AA-A010-01 5 145641279 145641279 G A RBM27 Silent p.Q700Q 0.43 TCGA-AA-A010-01 5 145719823 145719823 G A POU4F3 Missense_Mutation p.R278H 0.42 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 145980013 145980013 C T PPP2R2B Silent p.E270E 0.39 TCGA-AA-A010-01 5 1463679 1463679 G T LPCAT1 3'UTR 0.37 TCGA-AA-A010-01 5 1463683 1463683 C T LPCAT1 3'UTR 0.39 TCGA-AA-A010-01 5 14673797 14673797 G T FAM105B Nonsense_Mutation p.E67* 0.40 TCGA-AA-A010-01 5 146763647 146763647 A G STK32A 3'UTR 0.30 TCGA-AA-A010-01 5 146780341 146780341 C T DPYSL3 Missense_Mutation p.A456T 0.37 deleterious(0.01) benign(0.26) TCGA-AA-A010-01 5 146798019 146798019 T C DPYSL3 Missense_Mutation p.T216A 0.46 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 5 147011044 147011044 G T JAKMIP2 Missense_Mutation p.L603I 0.47 deleterious(0.04) probably_damaging(0.953) TCGA-AA-A010-01 5 147019295 147019295 C A JAKMIP2 Missense_Mutation p.R477I 0.32 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 5 147024525 147024525 T G JAKMIP2 Missense_Mutation p.K324T 0.30 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 5 147051452 147051452 C T JAKMIP2 5'UTR 0.42 TCGA-AA-A010-01 5 147474014 147474014 G T SPINK5 Missense_Mutation p.G255V 0.44 deleterious(0.04) probably_damaging(0.997) TCGA-AA-A010-01 5 147477462 147477462 G T SPINK5 Missense_Mutation p.K305N 0.25 deleterious(0.01) possibly_damaging(0.802) TCGA-AA-A010-01 5 147477550 147477550 G T SPINK5 Missense_Mutation p.A335S 0.50 tolerated(0.12) benign(0.121) TCGA-AA-A010-01 5 147505378 147505378 C A SPINK5 Missense_Mutation p.F974L 0.35 tolerated(1) benign(0.003) TCGA-AA-A010-01 5 147582573 147582573 A T SPINK6 5'UTR 0.25 TCGA-AA-A010-01 5 147902879 147902879 G T HTR4 Silent p.V128V 0.55 TCGA-AA-A010-01 5 148206749 148206749 G A ADRB2 Missense_Mutation p.A119T 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 148206786 148206786 G A ADRB2 Missense_Mutation p.R131H 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 148207711 148207711 A C ADRB2 3'UTR 0.46 TCGA-AA-A010-01 5 148407565 148407565 G A SH3TC2 Missense_Mutation p.A577V 0.35 deleterious(0) possibly_damaging(0.839) TCGA-AA-A010-01 5 148695474 148695474 C A AFAP1L1 Missense_Mutation p.H371N 0.44 tolerated(0.63) benign(0.002) TCGA-AA-A010-01 5 148719627 148719627 C T AFAP1L1 3'UTR 0.29 TCGA-AA-A010-01 5 149006714 149006714 A G ARHGEF37 Missense_Mutation p.T514A 0.37 deleterious(0.01) possibly_damaging(0.734) TCGA-AA-A010-01 5 149278950 149278950 C T PDE6A Silent p.E417E 0.37 TCGA-AA-A010-01 5 149314137 149314137 C A PDE6A Missense_Mutation p.D207Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 149324193 149324193 G A PDE6A Missense_Mutation p.S15L 0.19 tolerated(0.15) benign(0.041) TCGA-AA-A010-01 5 149357473 149357473 A T SLC26A2 Missense_Mutation p.K86N 0.44 deleterious(0.02) possibly_damaging(0.467) TCGA-AA-A010-01 5 149357787 149357787 C T SLC26A2 Missense_Mutation p.A191V 0.32 tolerated(0.27) benign(0.002) TCGA-AA-A010-01 5 149360042 149360042 A G SLC26A2 Missense_Mutation p.N296D 0.41 deleterious(0.02) probably_damaging(0.944) TCGA-AA-A010-01 5 149361317 149361317 G A SLC26A2 Missense_Mutation p.V721I 0.33 tolerated(0.42) benign(0.005) TCGA-AA-A010-01 5 149452867 149452867 T C CSF1R Missense_Mutation p.Y360C 0.42 tolerated(0.06) benign(0.062) TCGA-AA-A010-01 5 149514543 149514543 T C PDGFRB Missense_Mutation p.E134G 0.38 tolerated(0.1) benign(0.209) TCGA-AA-A010-01 5 149576355 149576355 C T SLC6A7 Silent p.G98G 0.37 TCGA-AA-A010-01 5 149602593 149602593 G A CAMK2A Silent p.I475I 0.41 TCGA-AA-A010-01 5 149677807 149677807 C T ARSI Missense_Mutation p.R227H 0.38 deleterious(0.01) benign(0.016) TCGA-AA-A010-01 5 150028806 150028806 G T SYNPO Missense_Mutation p.E567D 0.47 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 5 150030724 150030724 A G SYNPO 3'UTR 0.41 TCGA-AA-A010-01 5 150310670 150310670 C A ZNF300P1 RNA 0.36 TCGA-AA-A010-01 5 150501738 150501738 G A ANXA6 Silent p.Y439Y 0.42 TCGA-AA-A010-01 5 150501748 150501748 G A ANXA6 Missense_Mutation p.P436L 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-AA-A010-01 5 150509049 150509049 G T ANXA6 Silent p.V279V 0.36 TCGA-AA-A010-01 5 150657119 150657119 G A SLC36A3 Silent p.I457I 0.37 TCGA-AA-A010-01 5 150714913 150714913 T C SLC36A2 Missense_Mutation p.I241V 0.38 tolerated(0.1) benign(0.034) TCGA-AA-A010-01 5 150891851 150891851 G C FAT2 Missense_Mutation p.A3927G 0.40 benign(0) TCGA-AA-A010-01 5 150930189 150930189 G A FAT2 Missense_Mutation p.L1514F 0.41 benign(0.034) TCGA-AA-A010-01 5 150946747 150946747 C T FAT2 Silent p.S582S 0.34 TCGA-AA-A010-01 5 151239373 151239373 C T GLRA1 Missense_Mutation p.R150Q 0.30 tolerated(0.24) benign(0.022) TCGA-AA-A010-01 5 151784617 151784617 C A NMUR2 Missense_Mutation p.D20Y 0.38 deleterious(0.02) benign(0.01) TCGA-AA-A010-01 5 153065884 153065884 C T GRIA1 Nonsense_Mutation p.R387* 0.35 TCGA-AA-A010-01 5 153085558 153085558 T G GRIA1 Missense_Mutation p.F595C 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 153190866 153190866 A T GRIA1 3'UTR 0.39 TCGA-AA-A010-01 5 153436511 153436511 T A MFAP3 3'UTR 0.38 TCGA-AA-A010-01 5 153857159 153857159 C T HAND1 Missense_Mutation p.R137H 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 154393792 154393792 G A KIF4B Missense_Mutation p.E125K 0.36 tolerated(0.29) benign(0.248) TCGA-AA-A010-01 5 154396877 154396877 G T KIF4B Missense_Mutation p.G1153V 0.42 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-AA-A010-01 5 156195 156195 G A PLEKHG4B Missense_Mutation p.E384K 0.41 tolerated(0.14) possibly_damaging(0.797) TCGA-AA-A010-01 5 156589945 156589945 G T FAM71B Missense_Mutation p.S444Y 0.36 deleterious(0) possibly_damaging(0.844) TCGA-AA-A010-01 5 156590152 156590152 G A FAM71B Missense_Mutation p.A375V 0.40 tolerated(1) benign(0.003) TCGA-AA-A010-01 5 156723693 156723693 G A CYFIP2 Missense_Mutation p.E74K 0.38 tolerated(0.05) benign(0.028) TCGA-AA-A010-01 5 157218765 157218765 G T CLINT1 Missense_Mutation p.F442L 0.29 tolerated(0.11) benign(0.006) TCGA-AA-A010-01 5 158126116 158126116 C A EBF1 3'UTR 0.31 TCGA-AA-A010-01 5 158634949 158634949 C A RNF145 Intron 0.37 TCGA-AA-A010-01 5 158711932 158711932 G A UBLCP1 Missense_Mutation p.G317E 0.31 tolerated_low_confidence(1) benign(0.041) TCGA-AA-A010-01 5 158745801 158745801 A G IL12B Silent p.H266H 0.40 TCGA-AA-A010-01 5 158749444 158749444 G A IL12B Missense_Mutation p.T147I 0.22 tolerated(0.1) benign(0.064) TCGA-AA-A010-01 5 158749445 158749445 T C IL12B Missense_Mutation p.T147A 0.23 tolerated(0.57) benign(0) TCGA-AA-A010-01 5 159659124 159659124 C T FABP6 Silent p.I78I 0.40 TCGA-AA-A010-01 5 159659130 159659130 G T FABP6 Missense_Mutation p.K80N 0.39 deleterious(0.04) probably_damaging(0.941) TCGA-AA-A010-01 5 159776097 159776097 G A C1QTNF2 3'UTR 0.42 TCGA-AA-A010-01 5 159851318 159851318 C A PTTG1 Missense_Mutation p.F117L 0.36 tolerated(0.5) benign(0.047) TCGA-AA-A010-01 5 160886771 160886771 G T GABRB2 Missense_Mutation p.T106N 0.32 deleterious(0) probably_damaging(0.967) TCGA-AA-A010-01 5 161112908 161112908 G T GABRA6 5'UTR 0.37 TCGA-AA-A010-01 5 161116058 161116058 A C GABRA6 Missense_Mutation p.K110T 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 161128572 161128572 C T GABRA6 Silent p.S385S 0.37 TCGA-AA-A010-01 5 161277816 161277816 G A GABRA1 5'UTR 0.31 TCGA-AA-A010-01 5 161309635 161309635 G T GABRA1 Missense_Mutation p.D211Y 0.50 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 5 161322872 161322872 A C GABRA1 Missense_Mutation p.K353Q 0.35 tolerated(0.25) probably_damaging(0.995) TCGA-AA-A010-01 5 161324348 161324348 T G GABRA1 Missense_Mutation p.F431V 0.46 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 5 161324371 161324371 C A GABRA1 Nonsense_Mutation p.Y438* 0.31 TCGA-AA-A010-01 5 162930427 162930427 G A MAT2B 5'Flank 0.37 TCGA-AA-A010-01 5 16680191 16680191 G A MYO10 Silent p.Y1469Y 0.42 TCGA-AA-A010-01 5 16704716 16704716 G A MYO10 Missense_Mutation p.R750W 0.43 deleterious(0) possibly_damaging(0.861) TCGA-AA-A010-01 5 167545356 167545356 T G TENM2 Missense_Mutation p.Y625D 0.40 deleterious(0.04) probably_damaging(0.961) TCGA-AA-A010-01 5 167626886 167626886 C T TENM2 Silent p.I1060I 0.31 TCGA-AA-A010-01 5 167689867 167689867 T G TENM2 3'UTR 0.36 TCGA-AA-A010-01 5 167990927 167990927 C A PANK3 Missense_Mutation p.R260I 0.43 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 5 169081470 169081470 G A DOCK2 Missense_Mutation p.R36Q 0.38 tolerated(0.29) benign(0.005) TCGA-AA-A010-01 5 169108851 169108851 G A DOCK2 Missense_Mutation p.D192N 0.35 tolerated(0.25) benign(0) TCGA-AA-A010-01 5 169138993 169138993 C A DOCK2 Missense_Mutation p.H513N 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 169186768 169186768 G A DOCK2 Silent p.A812A 0.36 TCGA-AA-A010-01 5 169310019 169310019 G T FAM196B Missense_Mutation p.S295Y 0.51 tolerated(0.09) benign(0.022) TCGA-AA-A010-01 5 169533060 169533060 G T FOXI1 Missense_Mutation p.E33D 0.36 tolerated(1) benign(0.009) TCGA-AA-A010-01 5 169677744 169677744 C T LCP2 Missense_Mutation p.R490Q 0.36 deleterious(0.02) possibly_damaging(0.624) TCGA-AA-A010-01 5 169724628 169724628 G A LCP2 5'UTR 0.32 TCGA-AA-A010-01 5 170222300 170222300 G A GABRP Missense_Mutation p.R110H 0.47 deleterious(0) probably_damaging(0.928) TCGA-AA-A010-01 5 170814959 170814959 G T NPM1 Missense_Mutation p.D3Y 0.46 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 5 170883913 170883913 T G FGF18 3'UTR 0.46 TCGA-AA-A010-01 5 171305067 171305067 G T FBXW11 Missense_Mutation p.L286M 0.42 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 5 171638918 171638918 G A UBTD2 Silent p.F207F 0.36 TCGA-AA-A010-01 5 171639000 171639000 C T UBTD2 Missense_Mutation p.R180Q 0.39 tolerated(0.72) probably_damaging(0.992) TCGA-AA-A010-01 5 171766149 171766149 G A SH3PXD2B Missense_Mutation p.P654S 0.31 deleterious_low_confidence(0.05) benign(0.057) TCGA-AA-A010-01 5 171766328 171766328 A C SH3PXD2B Missense_Mutation p.M594R 0.36 deleterious(0.04) benign(0.013) TCGA-AA-A010-01 5 172550120 172550120 G T CREBRF Missense_Mutation p.E573D 0.39 tolerated(0.09) benign(0.006) TCGA-AA-A010-01 5 172560659 172560659 G T CREBRF Nonsense_Mutation p.E611* 0.30 TCGA-AA-A010-01 5 172581348 172581348 G A BNIP1 Silent p.E110E 0.34 TCGA-AA-A010-01 5 173035256 173035256 C T BOD1 3'UTR 0.10 TCGA-AA-A010-01 5 173316602 173316602 G A CPEB4 5'UTR 0.27 TCGA-AA-A010-01 5 173317785 173317785 G A CPEB4 Missense_Mutation p.R350H 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 5 173378936 173378936 G A CPEB4 Missense_Mutation p.R592Q 0.37 deleterious(0) possibly_damaging(0.848) TCGA-AA-A010-01 5 174156373 174156373 G A MSX2 Silent p.A197A 0.37 TCGA-AA-A010-01 5 174869971 174869971 G A DRD1 Silent p.V44V 0.36 TCGA-AA-A010-01 5 175110579 175110579 G A HRH2 Missense_Mutation p.D115N 0.39 deleterious(0.02) probably_damaging(1) TCGA-AA-A010-01 5 175111105 175111105 C T HRH2 Missense_Mutation p.A290V 0.43 tolerated(0.07) benign(0.221) TCGA-AA-A010-01 5 175716702 175716702 C T SIMC1 Intron 0.38 TCGA-AA-A010-01 5 175717758 175717758 C T SIMC1 Intron 0.32 TCGA-AA-A010-01 5 176003151 176003151 G A CDHR2 Missense_Mutation p.D387N 0.41 tolerated(0.33) benign(0.07) TCGA-AA-A010-01 5 176004439 176004439 G A CDHR2 Missense_Mutation p.D412N 0.38 tolerated(0.58) benign(0.075) TCGA-AA-A010-01 5 176011589 176011589 G A CDHR2 Silent p.E769E 0.39 TCGA-AA-A010-01 5 176025065 176025065 C A GPRIN1 Missense_Mutation p.D591Y 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A010-01 5 176025748 176025748 G T GPRIN1 Missense_Mutation p.T363N 0.38 deleterious(0.03) benign(0.427) TCGA-AA-A010-01 5 176477792 176477792 C A ZNF346 Missense_Mutation p.F186L 0.43 deleterious(0.03) possibly_damaging(0.88) TCGA-AA-A010-01 5 176562133 176562133 G T NSD1 Missense_Mutation p.R10I 0.40 tolerated_low_confidence(0.22) possibly_damaging(0.467) TCGA-AA-A010-01 5 176618976 176618976 G T NSD1 Missense_Mutation p.R340M 0.47 tolerated(0.44) possibly_damaging(0.855) TCGA-AA-A010-01 5 176639039 176639039 A G NSD1 Missense_Mutation p.I1213M 0.33 tolerated_low_confidence(0.05) benign(0.117) TCGA-AA-A010-01 5 176662835 176662835 G T NSD1 Missense_Mutation p.E1270D 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A010-01 5 176665479 176665479 A C NSD1 Missense_Mutation p.E1388A 0.33 tolerated(0.09) benign(0.04) TCGA-AA-A010-01 5 176815278 176815278 C A SLC34A1 Missense_Mutation p.L281M 0.46 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 5 176915058 176915058 G A PDLIM7 Intron 0.30 TCGA-AA-A010-01 5 177421251 177421251 C T PROP1 Silent p.P66P 0.39 TCGA-AA-A010-01 5 177633801 177633801 G T HNRNPAB Missense_Mutation p.K149N 0.38 deleterious(0.04) probably_damaging(0.994) TCGA-AA-A010-01 5 177636358 177636358 G T HNRNPAB Nonsense_Mutation p.E233* 0.37 TCGA-AA-A010-01 5 177669091 177669091 G A COL23A1 Silent p.G511G 0.31 TCGA-AA-A010-01 5 177673420 177673420 G A COL23A1 Missense_Mutation p.S444L 0.39 tolerated(0.31) benign(0.009) TCGA-AA-A010-01 5 178139258 178139258 G A ZNF354A Nonsense_Mutation p.R541* 0.30 TCGA-AA-A010-01 5 178139338 178139338 C A ZNF354A Missense_Mutation p.R514I 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 5 178310672 178310672 G T ZNF354B Nonsense_Mutation p.E407* 0.34 TCGA-AA-A010-01 5 178359169 178359169 T C ZFP2 Silent p.L285L 0.47 TCGA-AA-A010-01 5 178391689 178391689 C A ZNF454 Missense_Mutation p.T95N 0.36 tolerated(0.15) benign(0.001) TCGA-AA-A010-01 5 178392048 178392048 A C ZNF454 Silent p.R215R 0.45 TCGA-AA-A010-01 5 178392411 178392411 G A ZNF454 Missense_Mutation p.A336T 0.38 tolerated(0.06) probably_damaging(1) TCGA-AA-A010-01 5 178410150 178410150 C A GRM6 Missense_Mutation p.V733L 0.40 tolerated(0.72) benign(0.004) TCGA-AA-A010-01 5 178413132 178413132 T A GRM6 Missense_Mutation p.Q708L 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 178460040 178460040 G A ZNF879 Missense_Mutation p.R364Q 0.31 deleterious(0.05) probably_damaging(0.977) TCGA-AA-A010-01 5 178553060 178553060 C T ADAMTS2 Missense_Mutation p.A897T 0.28 tolerated(0.6) benign(0.004) TCGA-AA-A010-01 5 178770806 178770806 C T ADAMTS2 Missense_Mutation p.E166K 0.35 tolerated(0.47) benign(0.002) TCGA-AA-A010-01 5 179044626 179044626 T G HNRNPH1 Silent p.R316R 0.34 TCGA-AA-A010-01 5 179071859 179071859 G A C5orf60 Missense_Mutation p.R55C 0.38 tolerated(0.09) benign(0.439) TCGA-AA-A010-01 5 179078769 179078769 G A AC136604.1 Silent p.P84P 0.34 TCGA-AA-A010-01 5 179221028 179221028 A C LTC4S 5'UTR 0.35 TCGA-AA-A010-01 5 179302162 179302162 G A TBC1D9B Silent p.F642F 0.39 TCGA-AA-A010-01 5 179440072 179440072 C T RNF130 Missense_Mutation p.D228N 0.51 tolerated(0.4) possibly_damaging(0.884) TCGA-AA-A010-01 5 179663325 179663325 T G MAPK9 3'UTR 0.46 TCGA-AA-A010-01 5 179691840 179691840 C T MAPK9 Splice_Site p.X85_splice 0.29 TCGA-AA-A010-01 5 179739524 179739524 G T GFPT2 Silent p.I484I 0.39 TCGA-AA-A010-01 5 179992944 179992944 C A CNOT6 Silent p.I228I 0.28 TCGA-AA-A010-01 5 180057229 180057229 C T FLT4 Missense_Mutation p.R170H 0.35 tolerated(0.71) benign(0.001) TCGA-AA-A010-01 5 180166678 180166678 A G OR2Y1 Silent p.C127C 0.39 TCGA-AA-A010-01 5 180218676 180218676 C T MGAT1 Silent p.A432A 0.36 TCGA-AA-A010-01 5 180626117 180626117 C T TRIM7 Missense_Mutation p.E284K 0.33 deleterious(0.01) benign(0.146) TCGA-AA-A010-01 5 180661941 180661941 G T TRIM41 3'UTR 0.35 TCGA-AA-A010-01 5 182337 182337 G A PLEKHG4B Missense_Mutation p.V1239I 0.30 tolerated(1) benign(0.001) TCGA-AA-A010-01 5 19571762 19571762 G A CDH18 Silent p.Y393Y 0.32 TCGA-AA-A010-01 5 19571893 19571893 C T CDH18 Missense_Mutation p.A350T 0.31 tolerated(0.74) benign(0.016) TCGA-AA-A010-01 5 205710 205710 A G CCDC127 Missense_Mutation p.F162S 0.36 deleterious(0.01) benign(0.165) TCGA-AA-A010-01 5 21751818 21751818 C T CDH12 3'UTR 0.42 TCGA-AA-A010-01 5 21817149 21817149 C A CDH12 Nonsense_Mutation p.E303* 0.41 TCGA-AA-A010-01 5 233687 233687 G A SDHA Missense_Mutation p.A331T 0.44 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AA-A010-01 5 23521174 23521174 G T PRDM9 Nonsense_Mutation p.E132* 0.24 TCGA-AA-A010-01 5 23522441 23522441 G T PRDM9 Missense_Mutation p.K179N 0.38 tolerated(0.08) benign(0.141) TCGA-AA-A010-01 5 23526841 23526841 G T PRDM9 Silent p.G548G 0.35 TCGA-AA-A010-01 5 23527535 23527535 G T PRDM9 Nonsense_Mutation p.E780* 0.38 TCGA-AA-A010-01 5 24505295 24505295 G T CDH10 Missense_Mutation p.S440Y 0.32 deleterious(0.02) benign(0.27) TCGA-AA-A010-01 5 24509886 24509886 C T CDH10 Missense_Mutation p.E349K 0.26 tolerated(0.13) probably_damaging(0.979) TCGA-AA-A010-01 5 24593582 24593582 A T CDH10 Missense_Mutation p.F6L 0.42 tolerated(0.5) benign(0) TCGA-AA-A010-01 5 26885752 26885752 G A CDH9 Missense_Mutation p.A618V 0.32 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 5 26885851 26885851 G T CDH9 Missense_Mutation p.T585N 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 5 26885886 26885886 G A CDH9 Silent p.N573N 0.40 TCGA-AA-A010-01 5 26890057 26890057 T G CDH9 Missense_Mutation p.K467T 0.31 tolerated(0.46) probably_damaging(0.998) TCGA-AA-A010-01 5 26902801 26902801 C T CDH9 Missense_Mutation p.R346K 0.45 tolerated(1) benign(0.001) TCGA-AA-A010-01 5 26906067 26906067 C T CDH9 Splice_Site p.X271_splice 0.37 TCGA-AA-A010-01 5 26906150 26906150 G T CDH9 Silent p.G243G 0.36 TCGA-AA-A010-01 5 31401640 31401640 G A DROSHA Missense_Mutation p.R1342W 0.40 deleterious(0) probably_damaging(0.943) TCGA-AA-A010-01 5 31437400 31437400 T C DROSHA Missense_Mutation p.N963S 0.39 tolerated(0.31) benign(0.053) TCGA-AA-A010-01 5 314743 314743 T G PDCD6 3'UTR 0.33 TCGA-AA-A010-01 5 31511162 31511162 G A DROSHA Missense_Mutation p.T471M 0.37 tolerated(0.09) possibly_damaging(0.835) TCGA-AA-A010-01 5 31515283 31515283 C A DROSHA Nonsense_Mutation p.E368* 0.42 TCGA-AA-A010-01 5 32089981 32089981 C A PDZD2 Missense_Mutation p.H2143N 0.38 tolerated(0.05) benign(0.034) TCGA-AA-A010-01 5 32093114 32093114 C T PDZD2 Missense_Mutation p.A2610V 0.42 tolerated(0.39) benign(0.191) TCGA-AA-A010-01 5 32268851 32268851 C T MTMR12 Missense_Mutation p.R180Q 0.30 tolerated(0.21) probably_damaging(0.961) TCGA-AA-A010-01 5 32724817 32724817 T A NPR3 Nonsense_Mutation p.C261* 0.36 TCGA-AA-A010-01 5 32786366 32786366 G T NPR3 Missense_Mutation p.R514M 0.31 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 5 32789873 32789873 G T AC026703.1 Nonstop_Mutation p.*122Yext*5 0.43 TCGA-AA-A010-01 5 33527316 33527316 G A ADAMTS12 Missense_Mutation p.L1588F 0.38 tolerated(0.18) unknown(0) TCGA-AA-A010-01 5 33535029 33535029 T G ADAMTS12 Missense_Mutation p.K1505N 0.40 tolerated(0.45) benign(0.116) TCGA-AA-A010-01 5 33549455 33549455 G A ADAMTS12 Missense_Mutation p.R1387C 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 5 34020768 34020768 G A C1QTNF3 Nonsense_Mutation p.R294* 0.40 TCGA-AA-A010-01 5 34811961 34811961 C T RAI14 Missense_Mutation p.S219F 0.40 deleterious(0.01) probably_damaging(0.983) TCGA-AA-A010-01 5 34812037 34812037 C A RAI14 Silent p.I244I 0.38 TCGA-AA-A010-01 5 34850317 34850317 C T TTC23L Nonsense_Mutation p.R95* 0.36 TCGA-AA-A010-01 5 34925005 34925005 T C BRIX1 Silent p.N239N 0.28 TCGA-AA-A010-01 5 35003956 35003956 C T AGXT2 Missense_Mutation p.R450Q 0.33 tolerated(0.74) benign(0.001) TCGA-AA-A010-01 5 35033635 35033635 G T AGXT2 Missense_Mutation p.P202H 0.38 deleterious(0.03) probably_damaging(0.972) TCGA-AA-A010-01 5 35691347 35691347 C T SPEF2 Missense_Mutation p.S578F 0.45 tolerated(0.8) benign(0.003) TCGA-AA-A010-01 5 35910467 35910467 C A CAPSL Splice_Site p.X105_splice 0.37 TCGA-AA-A010-01 5 35991279 35991279 C T UGT3A1 Missense_Mutation p.A22T 0.36 tolerated(0.08) benign(0.125) TCGA-AA-A010-01 5 3599761 3599761 C T IRX1 Silent p.I233I 0.76 TCGA-AA-A010-01 5 3601284 3601284 G A IRX1 3'UTR 0.38 TCGA-AA-A010-01 5 36037940 36037940 C A UGT3A2 Missense_Mutation p.E418D 0.37 tolerated(0.16) benign(0.084) TCGA-AA-A010-01 5 36115183 36115183 G T LMBRD2 Missense_Mutation p.F492L 0.54 tolerated(0.05) probably_damaging(0.992) TCGA-AA-A010-01 5 36985782 36985782 C T NIPBL Nonsense_Mutation p.R834* 0.37 TCGA-AA-A010-01 5 37057339 37057339 C T NIPBL Missense_Mutation p.P2439S 0.29 deleterious(0.05) probably_damaging(0.999) TCGA-AA-A010-01 5 37064218 37064218 C A NIPBL Intron 0.37 TCGA-AA-A010-01 5 37107766 37107766 C T C5orf42 Missense_Mutation p.E3178K 0.39 deleterious(0) probably_damaging(0.932) TCGA-AA-A010-01 5 37158409 37158409 C A C5orf42 Missense_Mutation p.D2577Y 0.39 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 5 38406322 38406322 T A EGFLAM Missense_Mutation p.D269E 0.37 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-AA-A010-01 5 38481917 38481917 G T LIFR Missense_Mutation p.T1025N 0.34 tolerated(0.08) benign(0.333) TCGA-AA-A010-01 5 38510602 38510602 C T LIFR Missense_Mutation p.E319K 0.28 tolerated(0.37) benign(0.003) TCGA-AA-A010-01 5 38527354 38527354 A G LIFR Silent p.I100I 0.24 TCGA-AA-A010-01 5 38918953 38918953 A G OSMR Silent p.K458K 0.36 TCGA-AA-A010-01 5 38919000 38919000 A C OSMR Missense_Mutation p.N474T 0.40 tolerated(0.1) benign(0.066) TCGA-AA-A010-01 5 38950689 38950689 G T RICTOR Missense_Mutation p.F1087L 0.35 tolerated(0.54) benign(0.003) TCGA-AA-A010-01 5 38967304 38967304 C T RICTOR Missense_Mutation p.A393T 0.34 deleterious(0) probably_damaging(0.958) TCGA-AA-A010-01 5 39137711 39137711 C A FYB Missense_Mutation p.K512N 0.31 deleterious(0) benign(0.424) TCGA-AA-A010-01 5 39138763 39138763 C A FYB Missense_Mutation p.D474Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 40852810 40852810 G A CARD6 Missense_Mutation p.R459H 0.34 deleterious(0.03) benign(0.273) TCGA-AA-A010-01 5 40854209 40854209 A G CARD6 Silent p.S925S 0.39 TCGA-AA-A010-01 5 40962238 40962238 T C C7 Silent p.C571C 0.45 TCGA-AA-A010-01 5 41000446 41000446 C T MROH2B Missense_Mutation p.R1453H 0.37 deleterious(0.02) probably_damaging(0.91) TCGA-AA-A010-01 5 41007531 41007531 A C MROH2B Missense_Mutation p.L1212V 0.31 tolerated(0.64) benign(0.011) TCGA-AA-A010-01 5 41018468 41018468 G A MROH2B Missense_Mutation p.A913V 0.29 deleterious(0.04) benign(0.103) TCGA-AA-A010-01 5 41033206 41033206 G A MROH2B Silent p.V766V 0.41 TCGA-AA-A010-01 5 41049424 41049424 T C MROH2B Missense_Mutation p.S487G 0.31 tolerated(0.28) benign(0.016) TCGA-AA-A010-01 5 41159289 41159289 G A C6 Missense_Mutation p.S584L 0.34 tolerated(0.22) benign(0.36) TCGA-AA-A010-01 5 41195985 41195985 C A C6 Missense_Mutation p.D166Y 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 41382161 41382161 G T PLCXD3 Silent p.V193V 0.28 TCGA-AA-A010-01 5 41917356 41917356 G A C5orf51 Silent p.T280T 0.36 TCGA-AA-A010-01 5 42700031 42700031 A C GHR Missense_Mutation p.D182A 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 42718218 42718218 C A GHR Missense_Mutation p.L314I 0.36 deleterious(0) benign(0.355) TCGA-AA-A010-01 5 42718876 42718876 C A GHR Missense_Mutation p.L423I 0.43 deleterious(0.03) benign(0.049) TCGA-AA-A010-01 5 42779607 42779607 T G CCDC152 Missense_Mutation p.L104V 0.39 tolerated(0.12) possibly_damaging(0.661) TCGA-AA-A010-01 5 42799801 42799801 C T CCDC152 Missense_Mutation p.A228V 0.40 tolerated(0.12) possibly_damaging(0.705) TCGA-AA-A010-01 5 45261966 45261966 C A HCN1 3'UTR 0.32 TCGA-AA-A010-01 5 45262140 45262140 C T HCN1 Silent p.P852P 0.40 TCGA-AA-A010-01 5 475693 475693 G A SLC9A3 Missense_Mutation p.A745V 0.41 tolerated(0.17) benign(0.002) TCGA-AA-A010-01 5 482242 482242 G A SLC9A3 Silent p.L463L 0.43 TCGA-AA-A010-01 5 49701635 49701635 G T EMB Missense_Mutation p.S175Y 0.39 tolerated(0.06) probably_damaging(0.99) TCGA-AA-A010-01 5 50056143 50056143 G T PARP8 Missense_Mutation p.D98Y 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 5 50091129 50091129 G A PARP8 Missense_Mutation p.A436T 0.39 tolerated_low_confidence(0.86) benign(0.002) TCGA-AA-A010-01 5 50117054 50117054 A G PARP8 Missense_Mutation p.D559G 0.26 deleterious(0.03) possibly_damaging(0.488) TCGA-AA-A010-01 5 50137981 50137981 A C PARP8 3'UTR 0.38 TCGA-AA-A010-01 5 50680543 50680543 A G ISL1 Missense_Mutation p.Y66C 0.40 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 5 5182390 5182390 G T ADAMTS16 Missense_Mutation p.K245N 0.31 deleterious(0.02) possibly_damaging(0.675) TCGA-AA-A010-01 5 5182407 5182407 G T ADAMTS16 Missense_Mutation p.R251I 0.32 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 5 5186274 5186274 C T ADAMTS16 Silent p.N291N 0.44 TCGA-AA-A010-01 5 5186296 5186296 G A ADAMTS16 Missense_Mutation p.D299N 0.40 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 5 52235716 52235716 C A ITGA1 Missense_Mutation p.S1076Y 0.31 deleterious(0.01) benign(0.192) TCGA-AA-A010-01 5 52377521 52377521 G T ITGA2 Nonsense_Mutation p.E1047* 0.41 TCGA-AA-A010-01 5 5239964 5239964 G A ADAMTS16 Missense_Mutation p.D817N 0.26 tolerated(0.27) benign(0.021) TCGA-AA-A010-01 5 524335 524335 C T SLC9A3 Missense_Mutation p.A35T 0.48 tolerated(0.2) benign(0.001) TCGA-AA-A010-01 5 52781730 52781730 G A FST Intron 0.34 TCGA-AA-A010-01 5 53751813 53751813 G A HSPB3 Missense_Mutation p.R65Q 0.31 tolerated(0.47) benign(0.001) TCGA-AA-A010-01 5 53752076 53752076 C T HSPB3 3'UTR 0.37 TCGA-AA-A010-01 5 53816062 53816062 G T SNX18 3'UTR 0.29 TCGA-AA-A010-01 5 54320524 54320524 C T GZMK Missense_Mutation p.S34L 0.39 tolerated(0.24) benign(0.303) TCGA-AA-A010-01 5 54320634 54320634 C T GZMK Missense_Mutation p.R71W 0.40 tolerated(0.16) benign(0.001) TCGA-AA-A010-01 5 54327360 54327360 C T GZMK Nonsense_Mutation p.R178* 0.38 TCGA-AA-A010-01 5 54468957 54468957 C A CDC20B 5'UTR 0.38 TCGA-AA-A010-01 5 5447605 5447605 G A KIAA0947 Missense_Mutation p.E164K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 54570457 54570457 C T DHX29 Missense_Mutation p.R892K 0.46 tolerated(0.06) possibly_damaging(0.591) TCGA-AA-A010-01 5 55034786 55034786 G A DDX4 5'UTR 0.29 TCGA-AA-A010-01 5 55076914 55076914 G A DDX4 Missense_Mutation p.E173K 0.42 tolerated_low_confidence(0.08) benign(0.003) TCGA-AA-A010-01 5 55168150 55168150 A C IL31RA Missense_Mutation p.N109H 0.36 tolerated(0.05) benign(0.283) TCGA-AA-A010-01 5 55204396 55204396 G T IL31RA Intron 0.47 TCGA-AA-A010-01 5 55407326 55407326 G T ANKRD55 Missense_Mutation p.L417I 0.29 tolerated_low_confidence(0.06) benign(0.419) TCGA-AA-A010-01 5 56161771 56161771 C A MAP3K1 Nonsense_Mutation p.S423* 0.35 TCGA-AA-A010-01 5 56189427 56189427 C T MAP3K1 Missense_Mutation p.R1487C 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 5 56207237 56207237 G T SETD9 Nonsense_Mutation p.E114* 0.26 TCGA-AA-A010-01 5 56207243 56207243 C T SETD9 Missense_Mutation p.L116F 0.23 deleterious(0.01) possibly_damaging(0.873) TCGA-AA-A010-01 5 56242838 56242838 T G MIER3 Missense_Mutation p.D32A 0.40 deleterious(0.01) possibly_damaging(0.544) TCGA-AA-A010-01 5 56777342 56777342 G T ACTBL2 3'UTR 0.41 TCGA-AA-A010-01 5 58999527 58999527 G A PDE4D Intron 0.36 TCGA-AA-A010-01 5 60827313 60827313 C A ZSWIM6 Missense_Mutation p.S669Y 0.41 tolerated(0.1) benign(0.196) TCGA-AA-A010-01 5 61681323 61681323 C A KIF2A Missense_Mutation p.S721Y 0.41 deleterious(0.01) probably_damaging(0.97) TCGA-AA-A010-01 5 61875960 61875960 G T LRRC70 Missense_Mutation p.R232I 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-AA-A010-01 5 63256668 63256668 G A HTR1A Silent p.I293I 0.46 TCGA-AA-A010-01 5 63257163 63257163 G A HTR1A Silent p.C128C 0.35 TCGA-AA-A010-01 5 637922 637922 G A CEP72 Missense_Mutation p.D399N 0.34 tolerated(0.5) benign(0.004) TCGA-AA-A010-01 5 64079757 64079757 C G CWC27 Missense_Mutation p.T116R 0.26 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 5 648008 648008 G A CEP72 Silent p.T585T 0.38 TCGA-AA-A010-01 5 64817343 64817343 C A CENPK Nonsense_Mutation p.E204* 0.38 TCGA-AA-A010-01 5 64865547 64865547 C T PPWD1 Missense_Mutation p.R130C 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 64887580 64887580 A G TRIM23 3'UTR 0.36 TCGA-AA-A010-01 5 65288717 65288717 G T ERBB2IP Missense_Mutation p.Q57H 0.40 tolerated(0.11) probably_damaging(0.998) TCGA-AA-A010-01 5 65349250 65349250 T G ERBB2IP Missense_Mutation p.F702V 0.36 deleterious_low_confidence(0.04) benign(0.211) TCGA-AA-A010-01 5 65350520 65350520 G T ERBB2IP Missense_Mutation p.R1125I 0.52 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 5 66480120 66480120 G T CD180 Missense_Mutation p.A184D 0.42 tolerated(0.29) possibly_damaging(0.584) TCGA-AA-A010-01 5 66481746 66481746 A T CD180 Missense_Mutation p.F64I 0.39 tolerated(0.16) benign(0.024) TCGA-AA-A010-01 5 665337 665337 G A TPPP Silent p.F180F 0.37 TCGA-AA-A010-01 5 6668646 6668646 T G SRD5A1 3'UTR 0.52 TCGA-AA-A010-01 5 67588951 67588951 C T PIK3R1 Nonsense_Mutation p.R348* 0.72 TCGA-AA-A010-01 5 68530822 68530822 C A CDK7 Missense_Mutation p.S7Y 0.39 deleterious(0.01) benign(0.133) TCGA-AA-A010-01 5 68578615 68578615 C A CCDC125 Missense_Mutation p.D493Y 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A010-01 5 68616293 68616293 T G CCDC125 Missense_Mutation p.E25D 0.37 tolerated(0.96) benign(0.059) TCGA-AA-A010-01 5 68682026 68682026 C T RAD17 Nonsense_Mutation p.R251* 0.32 TCGA-AA-A010-01 5 70751817 70751817 A G BDP1 Missense_Mutation p.D38G 0.30 tolerated(0.2) benign(0.068) TCGA-AA-A010-01 5 70798585 70798585 G A BDP1 Silent p.E736E 0.29 TCGA-AA-A010-01 5 70805860 70805860 G T BDP1 Missense_Mutation p.D981Y 0.37 deleterious(0.01) benign(0.029) TCGA-AA-A010-01 5 70806514 70806514 G T BDP1 Missense_Mutation p.D1199Y 0.41 tolerated(0.07) probably_damaging(0.924) TCGA-AA-A010-01 5 70818667 70818667 G T BDP1 Missense_Mutation p.D1760Y 0.39 tolerated(0.27) probably_damaging(0.935) TCGA-AA-A010-01 5 70936890 70936890 A G MCCC2 Missense_Mutation p.T354A 0.19 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-AA-A010-01 5 71482516 71482516 G T MAP1B Nonsense_Mutation p.E149* 0.52 TCGA-AA-A010-01 5 71490728 71490728 G A MAP1B Missense_Mutation p.A516T 0.43 unknown(0) TCGA-AA-A010-01 5 71491721 71491721 G T MAP1B Nonsense_Mutation p.E847* 0.36 TCGA-AA-A010-01 5 71493385 71493385 G A MAP1B Silent p.P1401P 0.45 TCGA-AA-A010-01 5 71493401 71493401 G A MAP1B Missense_Mutation p.E1407K 0.35 possibly_damaging(0.819) TCGA-AA-A010-01 5 71493887 71493887 G A MAP1B Missense_Mutation p.D1569N 0.37 probably_damaging(0.996) TCGA-AA-A010-01 5 71495280 71495280 G A MAP1B Missense_Mutation p.R2033Q 0.40 benign(0.083) TCGA-AA-A010-01 5 71609979 71609979 C A MRPS27 Missense_Mutation p.R27I 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 71616258 71616258 C A PTCD2 Missense_Mutation p.L17I 0.40 deleterious(0.03) benign(0.097) TCGA-AA-A010-01 5 71756130 71756130 G A ZNF366 Silent p.C398C 0.39 TCGA-AA-A010-01 5 72185728 72185728 C A TNPO1 Missense_Mutation p.L549I 0.35 deleterious(0) probably_damaging(0.91) TCGA-AA-A010-01 5 72251947 72251947 G T FCHO2 Missense_Mutation p.E8D 0.37 tolerated(0.49) benign(0) TCGA-AA-A010-01 5 72286423 72286423 G T FCHO2 Nonsense_Mutation p.E107* 0.38 TCGA-AA-A010-01 5 72313048 72313048 G T FCHO2 Nonsense_Mutation p.E237* 0.30 TCGA-AA-A010-01 5 72377614 72377614 C A FCHO2 Nonsense_Mutation p.S662* 0.29 TCGA-AA-A010-01 5 72856980 72856980 G T ANKRA2 Silent p.V141V 0.38 TCGA-AA-A010-01 5 72863199 72863199 G T UTP15 Missense_Mutation p.Q10H 0.40 tolerated(0.62) benign(0.048) TCGA-AA-A010-01 5 73154029 73154029 T C ARHGEF28 Missense_Mutation p.S678P 0.27 tolerated(0.05) probably_damaging(0.962) TCGA-AA-A010-01 5 73181725 73181725 G T ARHGEF28 Missense_Mutation p.D1036Y 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 73200062 73200062 T G ARHGEF28 Missense_Mutation p.F1364V 0.39 tolerated(0.09) benign(0.002) TCGA-AA-A010-01 5 73205364 73205364 C T ARHGEF28 Missense_Mutation p.A1430V 0.37 deleterious(0.05) benign(0) TCGA-AA-A010-01 5 73207412 73207412 T G ARHGEF28 Intron 0.35 TCGA-AA-A010-01 5 73930636 73930636 C T ENC1 Missense_Mutation p.D559N 0.36 deleterious(0) benign(0.147) TCGA-AA-A010-01 5 7414736 7414736 G A ADCY2 Silent p.A87A 0.34 TCGA-AA-A010-01 5 7414748 7414748 G A ADCY2 Silent p.A91A 0.36 TCGA-AA-A010-01 5 74638408 74638408 G A HMGCR Intron 0.29 TCGA-AA-A010-01 5 74640131 74640131 C A HMGCR Missense_Mutation p.F113L 0.34 tolerated(0.32) benign(0.174) TCGA-AA-A010-01 5 74893576 74893576 C A POLK Missense_Mutation p.S830R 0.32 tolerated(0.57) benign(0.032) TCGA-AA-A010-01 5 74990616 74990616 A C POC5 Missense_Mutation p.F185C 0.34 deleterious(0) probably_damaging(0.938) TCGA-AA-A010-01 5 75008717 75008717 C A POC5 Missense_Mutation p.D16Y 0.40 deleterious(0) benign(0.265) TCGA-AA-A010-01 5 75913655 75913655 C T F2RL2 Missense_Mutation p.D293N 0.39 tolerated(0.27) benign(0.111) TCGA-AA-A010-01 5 76621554 76621554 G T PDE8B Missense_Mutation p.R197M 0.24 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 5 76709036 76709036 G A PDE8B Missense_Mutation p.E605K 0.39 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 5 76721656 76721656 G A PDE8B Missense_Mutation p.S828N 0.49 tolerated(0.1) probably_damaging(0.993) TCGA-AA-A010-01 5 76932823 76932823 C T OTP Silent p.P90P 0.51 TCGA-AA-A010-01 5 77004065 77004065 A G TBCA Splice_Site p.X53_splice 0.40 TCGA-AA-A010-01 5 77477330 77477330 C T AP3B1 Splice_Site p.X314_splice 0.42 TCGA-AA-A010-01 5 7773058 7773058 G A ADCY2 Missense_Mutation p.S743N 0.38 deleterious(0.05) benign(0.035) TCGA-AA-A010-01 5 7789868 7789868 C T ADCY2 Silent p.P861P 0.36 TCGA-AA-A010-01 5 78076387 78076387 G A ARSB Missense_Mutation p.R479W 0.39 deleterious(0.01) possibly_damaging(0.881) TCGA-AA-A010-01 5 78260411 78260411 T C ARSB Missense_Mutation p.E173G 0.44 tolerated(0.28) probably_damaging(0.995) TCGA-AA-A010-01 5 78415191 78415191 G A BHMT Silent p.E92E 0.41 TCGA-AA-A010-01 5 78427019 78427019 G T BHMT 3'UTR 0.34 TCGA-AA-A010-01 5 7867578 7867578 G A FASTKD3 Missense_Mutation p.R207C 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 78746936 78746936 T A HOMER1 Silent p.I57I 0.36 TCGA-AA-A010-01 5 78936750 78936750 G A PAPD4 Missense_Mutation p.R181Q 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 5 78985782 78985782 G A CMYA5 Missense_Mutation p.G18R 0.42 probably_damaging(0.98) TCGA-AA-A010-01 5 79032024 79032024 C A CMYA5 Missense_Mutation p.S2479Y 0.51 benign(0.133) TCGA-AA-A010-01 5 79032628 79032628 G T CMYA5 Missense_Mutation p.E2680D 0.32 benign(0.032) TCGA-AA-A010-01 5 79035093 79035093 A C CMYA5 Missense_Mutation p.K3502T 0.35 benign(0.068) TCGA-AA-A010-01 5 79048550 79048550 G A CMYA5 Silent p.A3681A 0.29 TCGA-AA-A010-01 5 79095519 79095519 T G CMYA5 3'UTR 0.26 TCGA-AA-A010-01 5 79282773 79282773 C A MTX3 Missense_Mutation p.G186C 0.36 tolerated(0.07) benign(0.086) TCGA-AA-A010-01 5 79335943 79335943 C T THBS4 Silent p.G44G 0.40 TCGA-AA-A010-01 5 79374967 79374967 C A THBS4 Silent p.I799I 0.46 TCGA-AA-A010-01 5 79752363 79752363 A G ZFYVE16 Missense_Mutation p.I1258M 0.36 deleterious(0) probably_damaging(0.963) TCGA-AA-A010-01 5 79968076 79968076 A G MSH3 Missense_Mutation p.E269G 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A010-01 5 80071530 80071530 G T MSH3 Missense_Mutation p.K757N 0.32 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 5 80171730 80171730 C A MSH3 3'UTR 0.33 TCGA-AA-A010-01 5 80171744 80171744 T G MSH3 3'UTR 0.43 TCGA-AA-A010-01 5 80497209 80497209 C T RASGRF2 Nonsense_Mutation p.R952* 0.38 TCGA-AA-A010-01 5 80553567 80553567 G A CKMT2 Silent p.K257K 0.35 TCGA-AA-A010-01 5 80600772 80600772 G T ZCCHC9 Nonsense_Mutation p.E66* 0.38 TCGA-AA-A010-01 5 80716160 80716160 G A SSBP2 3'UTR 0.50 TCGA-AA-A010-01 5 81474350 81474350 C A ATG10 Missense_Mutation p.H133N 0.41 tolerated(0.07) benign(0.213) TCGA-AA-A010-01 5 81613867 81613867 C T ATP6AP1L Silent p.C141C 0.31 TCGA-AA-A010-01 5 82499370 82499370 G T XRCC4 Splice_Site p.X161_splice 0.36 TCGA-AA-A010-01 5 82649113 82649113 C A XRCC4 3'UTR 0.34 TCGA-AA-A010-01 5 82808265 82808265 C T VCAN Intron 0.27 TCGA-AA-A010-01 5 82815539 82815539 G A VCAN Missense_Mutation p.D472N 0.29 deleterious(0.03) possibly_damaging(0.698) TCGA-AA-A010-01 5 82816372 82816372 C T VCAN Silent p.F749F 0.41 TCGA-AA-A010-01 5 82816704 82816704 G T VCAN Missense_Mutation p.S860I 0.34 tolerated(0.05) possibly_damaging(0.649) TCGA-AA-A010-01 5 82834109 82834109 A G VCAN Missense_Mutation p.T1763A 0.38 tolerated(0.24) benign(0.006) TCGA-AA-A010-01 5 82835677 82835677 C A VCAN Silent p.P2285P 0.41 TCGA-AA-A010-01 5 82835774 82835774 A G VCAN Missense_Mutation p.T2318A 0.49 tolerated(0.08) benign(0.003) TCGA-AA-A010-01 5 82836350 82836350 G T VCAN Missense_Mutation p.V2510L 0.33 tolerated(0.35) benign(0.005) TCGA-AA-A010-01 5 82836517 82836517 A C VCAN Missense_Mutation p.E2565D 0.52 tolerated(0.11) benign(0.098) TCGA-AA-A010-01 5 82849249 82849249 G A VCAN Missense_Mutation p.R3187Q 0.35 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 5 83239340 83239340 G A EDIL3 Silent p.I447I 0.23 TCGA-AA-A010-01 5 86564679 86564679 G A RASA1 Silent p.L137L 0.33 TCGA-AA-A010-01 5 86564705 86564705 T C RASA1 Missense_Mutation p.L146S 0.40 tolerated_low_confidence(0.21) possibly_damaging(0.587) TCGA-AA-A010-01 5 86565046 86565046 G T RASA1 Intron 0.46 TCGA-AA-A010-01 5 86658439 86658439 G T RASA1 Missense_Mutation p.K468N 0.40 deleterious(0.03) probably_damaging(0.966) TCGA-AA-A010-01 5 86659263 86659263 G T RASA1 Nonsense_Mutation p.G518* 0.33 TCGA-AA-A010-01 5 86690788 86690788 A C CCNH Intron 0.36 TCGA-AA-A010-01 5 88018645 88018645 C A MEF2C Missense_Mutation p.D410Y 0.43 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 5 88047697 88047697 C T MEF2C Missense_Mutation p.R207Q 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A010-01 5 89769958 89769958 C T MBLAC2 Missense_Mutation p.R51H 0.41 deleterious(0.04) probably_damaging(0.919) TCGA-AA-A010-01 5 89979676 89979677 - T GPR98 Frame_Shift_Ins p.S1982Ffs*2 0.19 TCGA-AA-A010-01 5 90016023 90016023 C A GPR98 Silent p.I3202I 0.33 TCGA-AA-A010-01 5 90072290 90072290 C T GPR98 Missense_Mutation p.R4142W 0.32 possibly_damaging(0.876) TCGA-AA-A010-01 5 90144517 90144517 C A GPR98 Missense_Mutation p.L5695I 0.30 possibly_damaging(0.636) TCGA-AA-A010-01 5 92924035 92924035 C T NR2F1 Silent p.V292V 0.41 TCGA-AA-A010-01 5 9337844 9337844 C A SEMA5A Nonsense_Mutation p.E69* 0.32 TCGA-AA-A010-01 5 93800735 93800735 C A KIAA0825 Missense_Mutation p.M634I 0.29 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 5 94288938 94288938 C A MCTP1 Missense_Mutation p.E322D 0.36 tolerated(0.2) benign(0.06) TCGA-AA-A010-01 5 94764394 94764394 C T FAM81B Silent p.F248F 0.45 TCGA-AA-A010-01 5 94999665 94999665 T G SPATA9 Missense_Mutation p.I156L 0.28 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 5 95018514 95018514 C A SPATA9 Missense_Mutation p.K15N 0.36 tolerated(0.07) possibly_damaging(0.787) TCGA-AA-A010-01 5 95018526 95018526 C T SPATA9 Silent p.G11G 0.36 TCGA-AA-A010-01 5 95255133 95255133 G A ELL2 Silent p.F104F 0.31 TCGA-AA-A010-01 5 95759067 95759067 C T PCSK1 Missense_Mutation p.V165I 0.24 tolerated(1) possibly_damaging(0.691) TCGA-AA-A010-01 5 96139113 96139113 C T ERAP1 Missense_Mutation p.E173K 0.38 tolerated(0.19) benign(0.329) TCGA-AA-A010-01 5 9629633 9629633 G T TAS2R1 Missense_Mutation p.T171K 0.37 tolerated(0.75) benign(0.005) TCGA-AA-A010-01 5 96358010 96358010 G A LNPEP Missense_Mutation p.V795I 0.32 tolerated(1) benign(0.006) TCGA-AA-A010-01 5 96460244 96460244 A G LIX1 Missense_Mutation p.S58P 0.23 tolerated(0.16) possibly_damaging(0.865) TCGA-AA-A010-01 5 98106434 98106434 C A RGMB Intron 0.41 TCGA-AA-A010-01 5 99897787 99897787 G T FAM174A Missense_Mutation p.R155I 0.26 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 6 100369045 100369045 G A MCHR2 Missense_Mutation p.A265V 0.34 deleterious(0.05) benign(0.026) TCGA-AA-A010-01 6 100838578 100838578 C T SIM1 Missense_Mutation p.A654T 0.40 tolerated_low_confidence(0.78) benign(0.002) TCGA-AA-A010-01 6 100896495 100896495 G A SIM1 Silent p.F201F 0.27 TCGA-AA-A010-01 6 100897271 100897271 G A SIM1 Missense_Mutation p.R171C 0.43 deleterious(0) probably_damaging(0.912) TCGA-AA-A010-01 6 102124605 102124605 G T GRIK2 Nonsense_Mutation p.E217* 0.30 TCGA-AA-A010-01 6 102337587 102337587 T G GRIK2 Missense_Mutation p.F533V 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 6 102337722 102337722 C A GRIK2 Missense_Mutation p.L578I 0.38 tolerated(0.12) probably_damaging(0.999) TCGA-AA-A010-01 6 10404875 10404875 G T TFAP2A Silent p.V210V 0.37 TCGA-AA-A010-01 6 105219890 105219890 G A HACE1 Missense_Mutation p.R642W 0.32 deleterious(0) possibly_damaging(0.87) TCGA-AA-A010-01 6 105244587 105244587 C T HACE1 Silent p.P253P 0.47 TCGA-AA-A010-01 6 10557087 10557087 G A GCNT2 Intron 0.40 TCGA-AA-A010-01 6 105609777 105609777 C A POPDC3 Missense_Mutation p.R3I 0.34 tolerated(0.16) benign(0.036) TCGA-AA-A010-01 6 105614421 105614421 C T POPDC3 Intron 0.23 TCGA-AA-A010-01 6 10687244 10687244 C T C6orf52 Silent p.A75A 0.36 TCGA-AA-A010-01 6 107100203 107100203 C T QRSL1 Missense_Mutation p.S226L 0.40 deleterious(0.02) benign(0.44) TCGA-AA-A010-01 6 10731045 10731045 G A TMEM14C 3'UTR 0.46 TCGA-AA-A010-01 6 107361386 107361386 C A C6orf203 Missense_Mutation p.S146Y 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 108026514 108026514 C T SCML4 Missense_Mutation p.A379T 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 108071011 108071011 A G SCML4 Missense_Mutation p.S55P 0.37 tolerated(1) benign(0.002) TCGA-AA-A010-01 6 108192973 108192973 C A SEC63 Nonsense_Mutation p.E740* 0.41 TCGA-AA-A010-01 6 108194023 108194023 T G SEC63 Missense_Mutation p.K710Q 0.26 tolerated(0.54) benign(0.171) TCGA-AA-A010-01 6 108508664 108508664 C A NR2E1 Silent p.I385I 0.32 TCGA-AA-A010-01 6 10874513 10874513 C T GCM2 Silent p.S412S 0.32 TCGA-AA-A010-01 6 10877516 10877516 C T GCM2 Missense_Mutation p.R67H 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 108840903 108840903 C T LACE1 Missense_Mutation p.R403C 0.36 deleterious(0) benign(0.43) TCGA-AA-A010-01 6 10903167 10903167 C T SYCP2L Silent p.F204F 0.35 TCGA-AA-A010-01 6 10931723 10931723 G T SYCP2L Splice_Site p.X561_splice 0.34 TCGA-AA-A010-01 6 109323533 109323533 C A SESN1 Missense_Mutation p.R98I 0.41 deleterious(0) probably_damaging(0.943) TCGA-AA-A010-01 6 10961572 10961572 C A SYCP2L Missense_Mutation p.L764I 0.35 deleterious(0.02) possibly_damaging(0.819) TCGA-AA-A010-01 6 10964055 10964055 G A SYCP2L 3'UTR 0.31 TCGA-AA-A010-01 6 109757345 109757345 C A PPIL6 Nonsense_Mutation p.E65* 0.38 TCGA-AA-A010-01 6 109787329 109787329 G T ZBTB24 Missense_Mutation p.L607I 0.36 deleterious(0.01) benign(0.117) TCGA-AA-A010-01 6 109802388 109802388 C T ZBTB24 Missense_Mutation p.R281K 0.38 tolerated(0.22) benign(0.005) TCGA-AA-A010-01 6 109993198 109993198 G A AK9 Silent p.S85S 0.41 TCGA-AA-A010-01 6 110301378 110301378 C T GPR6 Missense_Mutation p.R355C 0.42 deleterious(0.01) benign(0.005) TCGA-AA-A010-01 6 110714274 110714274 G T DDO Missense_Mutation p.L272M 0.30 tolerated(0.06) possibly_damaging(0.899) TCGA-AA-A010-01 6 110768150 110768150 A G SLC22A16 Missense_Mutation p.F193L 0.34 tolerated(0.06) benign(0.327) TCGA-AA-A010-01 6 110768184 110768184 G A SLC22A16 Silent p.R181R 0.35 TCGA-AA-A010-01 6 11104936 11104936 C T ERVFRD-1 Missense_Mutation p.R203Q 0.37 tolerated(0.4) benign(0.098) TCGA-AA-A010-01 6 111283699 111283699 G T GTF3C6 Nonsense_Mutation p.E118* 0.37 TCGA-AA-A010-01 6 111587861 111587861 G T KIAA1919 Nonsense_Mutation p.E366* 0.41 TCGA-AA-A010-01 6 111689163 111689163 T C REV3L Missense_Mutation p.D1943G 0.35 deleterious(0) possibly_damaging(0.772) TCGA-AA-A010-01 6 111694619 111694619 A C REV3L Missense_Mutation p.F1647V 0.50 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 6 111709226 111709226 G T REV3L Missense_Mutation p.L309I 0.43 deleterious(0.03) benign(0.083) TCGA-AA-A010-01 6 11192673 11192673 C T NEDD9 Missense_Mutation p.D190N 0.35 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 6 112024169 112024169 G A FYN Missense_Mutation p.R206C 0.27 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 6 112405412 112405412 T G TUBE1 Missense_Mutation p.I64L 0.43 deleterious(0.04) benign(0.053) TCGA-AA-A010-01 6 112408481 112408481 G A TUBE1 Silent p.C18C 0.36 TCGA-AA-A010-01 6 112435386 112435386 G T LAMA4 Missense_Mutation p.S1740Y 0.19 deleterious(0.01) possibly_damaging(0.857) TCGA-AA-A010-01 6 112535106 112535106 G T LAMA4 Intron 0.50 TCGA-AA-A010-01 6 112535247 112535247 A T LAMA4 Intron 0.32 TCGA-AA-A010-01 6 112671804 112671804 G T RFPL4B 3'UTR 0.39 TCGA-AA-A010-01 6 114181781 114181781 G A MARCKS 3'UTR 0.45 TCGA-AA-A010-01 6 114264668 114264668 G A HDAC2 Nonsense_Mutation p.R409* 0.32 TCGA-AA-A010-01 6 114378554 114378554 T G HS3ST5 Missense_Mutation p.K303T 0.36 deleterious(0) possibly_damaging(0.881) TCGA-AA-A010-01 6 116439096 116439096 T C NT5DC1 Missense_Mutation p.S173P 0.41 deleterious(0.01) benign(0.309) TCGA-AA-A010-01 6 116747852 116747852 C A DSE Missense_Mutation p.L178I 0.33 tolerated(0.07) benign(0.168) TCGA-AA-A010-01 6 116821813 116821813 T C TRAPPC3L Missense_Mutation p.Y86C 0.41 deleterious(0) benign(0.404) TCGA-AA-A010-01 6 116833255 116833255 G A FAM26E Silent p.T132T 0.54 TCGA-AA-A010-01 6 116875390 116875390 T G FAM26D Missense_Mutation p.F2C 0.42 deleterious(0) possibly_damaging(0.896) TCGA-AA-A010-01 6 116949247 116949247 G T RSPH4A Missense_Mutation p.K459N 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 117083173 117083173 G A FAM162B Silent p.I119I 0.34 TCGA-AA-A010-01 6 117245850 117245850 G A RFX6 Missense_Mutation p.R525Q 0.24 tolerated(0.06) possibly_damaging(0.556) TCGA-AA-A010-01 6 117609848 117609848 C T ROS1 Missense_Mutation p.G2284D 0.32 tolerated_low_confidence(0.47) benign(0.002) TCGA-AA-A010-01 6 117641081 117641081 C T ROS1 Missense_Mutation p.A1964T 0.24 deleterious(0) possibly_damaging(0.773) TCGA-AA-A010-01 6 117680988 117680988 T G ROS1 Missense_Mutation p.N1211T 0.26 tolerated(0.23) benign(0.109) TCGA-AA-A010-01 6 11778854 11778854 T G ADTRP Missense_Mutation p.T47P 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 6 118635343 118635343 G T SLC35F1 Missense_Mutation p.Q385H 0.41 tolerated(0.06) benign(0.012) TCGA-AA-A010-01 6 118881055 118881055 C A PLN 3'UTR 0.39 TCGA-AA-A010-01 6 118953769 118953769 C A CEP85L Missense_Mutation p.D30Y 0.39 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AA-A010-01 6 119232893 119232893 T C MCM9 Missense_Mutation p.K358E 0.33 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 6 119301414 119301414 C T FAM184A Silent p.T730T 0.33 TCGA-AA-A010-01 6 119345756 119345756 C T FAM184A Missense_Mutation p.E128K 0.42 tolerated(0.08) possibly_damaging(0.833) TCGA-AA-A010-01 6 119390286 119390286 C T FAM184A Intron 0.31 TCGA-AA-A010-01 6 12015869 12015869 G A HIVEP1 Missense_Mutation p.R3Q 0.33 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 6 121401786 121401786 G A TBC1D32 3'Flank 0.38 TCGA-AA-A010-01 6 121605029 121605029 A G TBC1D32 Missense_Mutation p.V467A 0.33 deleterious(0) possibly_damaging(0.843) TCGA-AA-A010-01 6 121655435 121655435 C A TBC1D32 Nonsense_Mutation p.E48* 0.37 TCGA-AA-A010-01 6 121769248 121769248 A C GJA1 3'UTR 0.33 TCGA-AA-A010-01 6 121769950 121769950 T A GJA1 3'UTR 0.38 TCGA-AA-A010-01 6 122733547 122733547 G T HSF2 Missense_Mutation p.E41D 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-AA-A010-01 6 125404022 125404022 T G RNF217 Missense_Mutation p.I269M 0.39 deleterious_low_confidence(0.01) benign(0.076) TCGA-AA-A010-01 6 125578304 125578304 G T TPD52L1 Missense_Mutation p.K162N 0.35 deleterious(0) probably_damaging(0.976) TCGA-AA-A010-01 6 125598320 125598320 G T HDDC2 Missense_Mutation p.L149I 0.35 tolerated(0.05) benign(0.158) TCGA-AA-A010-01 6 127608260 127608260 C T RNF146 Nonsense_Mutation p.R168* 0.41 TCGA-AA-A010-01 6 127637601 127637601 A C ECHDC1 Missense_Mutation p.F143C 0.43 deleterious(0) probably_damaging(0.943) TCGA-AA-A010-01 6 127768627 127768627 G A KIAA0408 Silent p.S279S 0.30 TCGA-AA-A010-01 6 127797552 127797552 C A SOGA3 Missense_Mutation p.R540I 0.40 deleterious(0.01) probably_damaging(0.985) TCGA-AA-A010-01 6 128135058 128135058 C T THEMIS Missense_Mutation p.R243H 0.32 tolerated(0.65) benign(0.014) TCGA-AA-A010-01 6 128150770 128150770 A C THEMIS Missense_Mutation p.I187S 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 6 128222005 128222005 C T THEMIS Missense_Mutation p.A25T 0.21 deleterious(0.01) benign(0.117) TCGA-AA-A010-01 6 128222054 128222054 G A THEMIS Silent p.F8F 0.46 TCGA-AA-A010-01 6 128222074 128222074 C T THEMIS Missense_Mutation p.A2T 0.25 deleterious(0.05) benign(0.22) TCGA-AA-A010-01 6 129470225 129470225 T C LAMA2 Silent p.T337T 0.37 TCGA-AA-A010-01 6 129511377 129511377 C T LAMA2 Missense_Mutation p.R499C 0.41 deleterious(0) possibly_damaging(0.849) TCGA-AA-A010-01 6 129704300 129704300 G T LAMA2 Nonsense_Mutation p.G1665* 0.25 TCGA-AA-A010-01 6 129704345 129704345 G T LAMA2 Nonsense_Mutation p.E1680* 0.27 TCGA-AA-A010-01 6 129714359 129714359 C T LAMA2 Missense_Mutation p.R1802C 0.38 deleterious(0.03) possibly_damaging(0.846) TCGA-AA-A010-01 6 129722392 129722392 C T LAMA2 Silent p.S1823S 0.33 TCGA-AA-A010-01 6 129823819 129823819 G T LAMA2 Nonsense_Mutation p.E2754* 0.46 TCGA-AA-A010-01 6 130363911 130363911 G T L3MBTL3 Missense_Mutation p.D23Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 6 130475971 130475971 T C SAMD3 Missense_Mutation p.Q341R 0.43 tolerated(0.05) benign(0.022) TCGA-AA-A010-01 6 131490293 131490293 G T AKAP7 Nonsense_Mutation p.E157* 0.38 TCGA-AA-A010-01 6 131540945 131540945 A G AKAP7 Missense_Mutation p.I283V 0.44 tolerated(0.53) benign(0.059) TCGA-AA-A010-01 6 131915248 131915248 G A MED23 Silent p.L1075L 0.66 TCGA-AA-A010-01 6 132270533 132270533 G A CTGF Silent p.C307C 0.39 TCGA-AA-A010-01 6 132874618 132874618 G A TAAR8 Missense_Mutation p.V263I 0.42 deleterious(0.04) possibly_damaging(0.902) TCGA-AA-A010-01 6 132874663 132874663 T G TAAR8 Missense_Mutation p.L278V 0.38 tolerated(0.3) benign(0.068) TCGA-AA-A010-01 6 132891927 132891927 C A TAAR6 Missense_Mutation p.S156Y 0.33 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 6 132966784 132966784 T G TAAR1 Missense_Mutation p.D120A 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 6 133004208 133004208 G A VNN1 3'UTR 0.22 TCGA-AA-A010-01 6 133004318 133004318 T C VNN1 Silent p.L501L 0.38 TCGA-AA-A010-01 6 133004332 133004332 T G VNN1 Silent p.R497R 0.38 TCGA-AA-A010-01 6 133014420 133014420 A G VNN1 Missense_Mutation p.V190A 0.39 tolerated(0.51) benign(0.003) TCGA-AA-A010-01 6 133015269 133015269 A G VNN1 Missense_Mutation p.S132P 0.35 deleterious(0.01) possibly_damaging(0.765) TCGA-AA-A010-01 6 133077060 133077060 A G VNN2 Silent p.C153C 0.46 TCGA-AA-A010-01 6 133777744 133777744 G T EYA4 Missense_Mutation p.A110S 0.29 tolerated(0.61) benign(0.002) TCGA-AA-A010-01 6 133834068 133834068 C A EYA4 Missense_Mutation p.L465I 0.36 tolerated(0.13) probably_damaging(0.968) TCGA-AA-A010-01 6 133850054 133850054 C A EYA4 3'UTR 0.30 TCGA-AA-A010-01 6 134312299 134312299 C T SLC2A12 Silent p.E616E 0.34 TCGA-AA-A010-01 6 134493900 134493900 G T SGK1 Missense_Mutation p.L283I 0.36 deleterious(0.03) probably_damaging(0.918) TCGA-AA-A010-01 6 136500168 136500168 C A PDE7B Silent p.I279I 0.37 TCGA-AA-A010-01 6 136554602 136554602 C A MTFR2 Missense_Mutation p.R302I 0.38 deleterious(0) benign(0.09) TCGA-AA-A010-01 6 136582500 136582500 C A BCLAF1 Missense_Mutation p.W887L 0.28 deleterious(0.04) possibly_damaging(0.504) TCGA-AA-A010-01 6 136589371 136589371 C A BCLAF1 Nonsense_Mutation p.E776* 0.10 TCGA-AA-A010-01 6 136589458 136589458 C A BCLAF1 Missense_Mutation p.D747Y 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A010-01 6 136597195 136597195 C T BCLAF1 Missense_Mutation p.V490I 0.24 tolerated(0.58) benign(0.198) TCGA-AA-A010-01 6 136597209 136597209 G T BCLAF1 Missense_Mutation p.S485Y 0.14 deleterious(0.02) possibly_damaging(0.781) TCGA-AA-A010-01 6 136681169 136681169 G A MAP7 Nonsense_Mutation p.R624* 0.36 TCGA-AA-A010-01 6 136977571 136977571 A C MAP3K5 Missense_Mutation p.I518M 0.36 deleterious(0.01) possibly_damaging(0.497) TCGA-AA-A010-01 6 137243870 137243870 C T SLC35D3 Missense_Mutation p.P102S 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 137245441 137245441 C T SLC35D3 Silent p.G286G 0.39 TCGA-AA-A010-01 6 138754793 138754793 G T NHSL1 Missense_Mutation p.A234D 0.33 tolerated(0.21) benign(0.002) TCGA-AA-A010-01 6 139487776 139487776 G T HECA Missense_Mutation p.K209N 0.35 deleterious(0) possibly_damaging(0.866) TCGA-AA-A010-01 6 13977386 13977386 T A RNF182 Silent p.S12S 0.43 TCGA-AA-A010-01 6 13978154 13978154 A C RNF182 3'UTR 0.39 TCGA-AA-A010-01 6 13979545 13979545 A C RNF182 3'UTR 0.30 TCGA-AA-A010-01 6 14131907 14131907 A G CD83 Missense_Mutation p.T104A 0.37 deleterious(0.04) benign(0.052) TCGA-AA-A010-01 6 142630707 142630707 G A GPR126 Missense_Mutation p.S10N 0.39 tolerated_low_confidence(0.37) benign(0.004) TCGA-AA-A010-01 6 143074790 143074790 G A HIVEP2 Silent p.G2265G 0.42 TCGA-AA-A010-01 6 143458008 143458008 A G AIG1 Missense_Mutation p.T60A 0.35 tolerated(0.58) benign(0.027) TCGA-AA-A010-01 6 144803440 144803440 G T UTRN Missense_Mutation p.Q1201H 0.35 tolerated(0.39) benign(0.068) TCGA-AA-A010-01 6 144838077 144838077 A C UTRN Missense_Mutation p.K1845T 0.25 tolerated(0.52) benign(0.066) TCGA-AA-A010-01 6 146244873 146244873 C A SHPRH Nonsense_Mutation p.E1151* 0.35 TCGA-AA-A010-01 6 146276107 146276107 C A SHPRH Nonsense_Mutation p.E118* 0.36 TCGA-AA-A010-01 6 146875918 146875918 C T RAB32 3'UTR 0.36 TCGA-AA-A010-01 6 146988018 146988018 A C ADGB Missense_Mutation p.L273F 0.35 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A010-01 6 146993556 146993556 C A ADGB Missense_Mutation p.S347Y 0.41 deleterious(0) probably_damaging(0.914) TCGA-AA-A010-01 6 147123049 147123049 C T ADGB Nonsense_Mutation p.R1574* 0.34 TCGA-AA-A010-01 6 147124914 147124914 G A ADGB Intron 0.33 TCGA-AA-A010-01 6 147684799 147684799 C T STXBP5 Silent p.C958C 0.26 TCGA-AA-A010-01 6 147830463 147830463 G T SAMD5 Missense_Mutation p.M133I 0.32 tolerated(0.18) benign(0.323) TCGA-AA-A010-01 6 148865270 148865270 C T SASH1 Silent p.V888V 0.29 TCGA-AA-A010-01 6 149783063 149783063 C T ZC3H12D Missense_Mutation p.A117T 0.36 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 6 149912058 149912058 G T GINM1 3'UTR 0.53 TCGA-AA-A010-01 6 150023295 150023295 A C LATS1 5'UTR 0.30 TCGA-AA-A010-01 6 150290457 150290457 G T ULBP1 Nonsense_Mutation p.E196* 0.36 TCGA-AA-A010-01 6 150342081 150342081 G T RAET1L Missense_Mutation p.F197L 0.24 deleterious(0.01) possibly_damaging(0.742) TCGA-AA-A010-01 6 150390208 150390208 A G ULBP3 5'UTR 0.30 TCGA-AA-A010-01 6 151331063 151331063 G A MTHFD1L Missense_Mutation p.R745Q 0.41 deleterious(0.01) possibly_damaging(0.627) TCGA-AA-A010-01 6 151355635 151355635 A C MTHFD1L Missense_Mutation p.I865L 0.43 tolerated(0.23) benign(0.075) TCGA-AA-A010-01 6 151672096 151672096 G T AKAP12 Missense_Mutation p.R857M 0.37 deleterious(0.02) benign(0.163) TCGA-AA-A010-01 6 151672797 151672797 G A AKAP12 Missense_Mutation p.D1091N 0.31 deleterious(0.03) benign(0.346) TCGA-AA-A010-01 6 151673457 151673457 G T AKAP12 Nonsense_Mutation p.E1311* 0.33 TCGA-AA-A010-01 6 151673474 151673474 G T AKAP12 Missense_Mutation p.K1316N 0.32 tolerated(0.08) benign(0.024) TCGA-AA-A010-01 6 151865710 151865710 G A CCDC170 Silent p.K149K 0.26 TCGA-AA-A010-01 6 152129072 152129072 G A ESR1 Missense_Mutation p.A9T 0.37 tolerated_low_confidence(0.46) benign(0.002) TCGA-AA-A010-01 6 152201885 152201885 G A ESR1 Missense_Mutation p.E247K 0.36 deleterious(0) possibly_damaging(0.869) TCGA-AA-A010-01 6 152476106 152476106 G T SYNE1 Missense_Mutation p.S8017Y 0.38 benign(0.089) TCGA-AA-A010-01 6 152523035 152523035 C T SYNE1 Missense_Mutation p.R7690Q 0.35 benign(0.208) TCGA-AA-A010-01 6 152545656 152545656 A G SYNE1 Silent p.A7165A 0.26 TCGA-AA-A010-01 6 152576147 152576147 C A SYNE1 Missense_Mutation p.E6446D 0.36 possibly_damaging(0.582) TCGA-AA-A010-01 6 152590378 152590378 G A SYNE1 Missense_Mutation p.A6206V 0.31 benign(0.021) TCGA-AA-A010-01 6 152638050 152638050 G A SYNE1 Silent p.V5548V 0.36 TCGA-AA-A010-01 6 152646405 152646405 C T SYNE1 Silent p.E5157E 0.38 TCGA-AA-A010-01 6 152652612 152652612 G A SYNE1 Missense_Mutation p.S4403L 0.38 benign(0.075) TCGA-AA-A010-01 6 152655198 152655198 T G SYNE1 Missense_Mutation p.N4247H 0.38 benign(0.006) TCGA-AA-A010-01 6 152673421 152673421 G A SYNE1 Missense_Mutation p.A3774V 0.35 benign(0.016) TCGA-AA-A010-01 6 152688429 152688429 G A SYNE1 Missense_Mutation p.A3299V 0.36 benign(0.028) TCGA-AA-A010-01 6 152711567 152711567 A G SYNE1 Silent p.G2675G 0.41 TCGA-AA-A010-01 6 152716674 152716674 A C SYNE1 Missense_Mutation p.F2563L 0.32 possibly_damaging(0.904) TCGA-AA-A010-01 6 152756993 152756993 G T SYNE1 Intron 0.37 TCGA-AA-A010-01 6 152774790 152774790 G A SYNE1 Silent p.T986T 0.49 TCGA-AA-A010-01 6 152782858 152782858 C A SYNE1 Silent p.V756V 0.40 TCGA-AA-A010-01 6 152831500 152831500 C A SYNE1 Nonsense_Mutation p.E137* 0.33 TCGA-AA-A010-01 6 152832217 152832217 A G SYNE1 Missense_Mutation p.S111P 0.26 benign(0.177) TCGA-AA-A010-01 6 153347612 153347612 C T RGS17 Silent p.E62E 0.35 TCGA-AA-A010-01 6 154360628 154360628 C A OPRM1 Silent p.V76V 0.41 TCGA-AA-A010-01 6 154428980 154428980 C A OPRM1 Intron 0.41 TCGA-AA-A010-01 6 155153633 155153633 G T SCAF8 Missense_Mutation p.D974Y 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 6 155451148 155451148 A G TIAM2 Missense_Mutation p.E264G 0.32 deleterious(0.03) benign(0.003) TCGA-AA-A010-01 6 155451364 155451364 C A TIAM2 Missense_Mutation p.A336D 0.37 tolerated(0.07) possibly_damaging(0.544) TCGA-AA-A010-01 6 155574087 155574087 G A TIAM2 Silent p.S1375S 0.38 TCGA-AA-A010-01 6 155728326 155728326 C A NOX3 Missense_Mutation p.K506N 0.43 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 155764542 155764542 G A NOX3 Silent p.I117I 0.31 TCGA-AA-A010-01 6 158487517 158487517 G A SYNJ2 Missense_Mutation p.E523K 0.44 tolerated(0.21) possibly_damaging(0.7) TCGA-AA-A010-01 6 158510923 158510923 C T SYNJ2 Missense_Mutation p.T1170I 0.34 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-AA-A010-01 6 158925206 158925206 G A TULP4 Missense_Mutation p.R1504Q 0.36 tolerated(0.06) probably_damaging(0.997) TCGA-AA-A010-01 6 159166652 159166652 C T SYTL3 Silent p.N332N 0.30 TCGA-AA-A010-01 6 159414906 159414906 G A RSPH3 Nonsense_Mutation p.R199* 0.36 TCGA-AA-A010-01 6 159659640 159659640 G T FNDC1 Missense_Mutation p.D1375Y 0.39 deleterious(0) unknown(0) TCGA-AA-A010-01 6 159660843 159660843 G A FNDC1 Missense_Mutation p.R1492Q 0.36 tolerated_low_confidence(0.56) benign(0.007) TCGA-AA-A010-01 6 159672552 159672552 G T FNDC1 Missense_Mutation p.D1685Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 6 160199754 160199754 C A ACAT2 Missense_Mutation p.L363I 0.40 deleterious(0.01) possibly_damaging(0.719) TCGA-AA-A010-01 6 160329089 160329089 G T MAS1 3'UTR 0.36 TCGA-AA-A010-01 6 160464305 160464305 G A IGF2R Missense_Mutation p.A536T 0.30 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 6 160471551 160471551 A C IGF2R Missense_Mutation p.K854T 0.25 tolerated(0.16) benign(0.038) TCGA-AA-A010-01 6 160511093 160511093 C T IGF2R Missense_Mutation p.R2205W 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 6 160677684 160677684 G T SLC22A2 Missense_Mutation p.F160L 0.35 tolerated(0.05) possibly_damaging(0.902) TCGA-AA-A010-01 6 160863798 160863798 G T SLC22A3 Missense_Mutation p.A432S 0.42 tolerated(0.44) benign(0.001) TCGA-AA-A010-01 6 160966491 160966491 G T LPA Nonsense_Mutation p.Y1793* 0.37 TCGA-AA-A010-01 6 160966563 160966563 G A LPA Silent p.Y1769Y 0.42 TCGA-AA-A010-01 6 161026111 161026111 G A LPA Missense_Mutation p.S971L 0.24 tolerated(0.25) possibly_damaging(0.889) TCGA-AA-A010-01 6 1613400 1613400 C T FOXC1 3'UTR 0.35 TCGA-AA-A010-01 6 161537932 161537932 C A MAP3K4 3'UTR 0.41 TCGA-AA-A010-01 6 161587355 161587355 G A AGPAT4 Silent p.I91I 0.45 TCGA-AA-A010-01 6 163149213 163149213 A C PACRG 5'UTR 0.41 TCGA-AA-A010-01 6 163483313 163483313 G T PACRG Missense_Mutation p.K141N 0.29 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 6 163735864 163735864 T A PACRG Missense_Mutation p.S246T 0.35 tolerated(0.41) benign(0.027) TCGA-AA-A010-01 6 163876420 163876420 G A QKI Silent p.E84E 0.45 TCGA-AA-A010-01 6 163983020 163983020 G T QKI Nonsense_Mutation p.G185* 0.25 TCGA-AA-A010-01 6 163984706 163984706 G A QKI Missense_Mutation p.A297T 0.32 tolerated(0.16) benign(0.143) TCGA-AA-A010-01 6 163985721 163985721 G A QKI Intron 0.30 TCGA-AA-A010-01 6 163986914 163986914 G T QKI Intron 0.25 TCGA-AA-A010-01 6 163987004 163987004 G T QKI Intron 0.29 TCGA-AA-A010-01 6 163987745 163987745 T G QKI Intron 0.45 TCGA-AA-A010-01 6 165809904 165809904 C T PDE10A Silent p.T441T 0.33 TCGA-AA-A010-01 6 165829676 165829676 C T PDE10A Splice_Site p.X364_splice 0.42 TCGA-AA-A010-01 6 165843806 165843806 C T PDE10A Missense_Mutation p.E258K 0.42 tolerated(0.68) possibly_damaging(0.905) TCGA-AA-A010-01 6 166721729 166721729 A G PRR18 5'UTR 0.33 TCGA-AA-A010-01 6 166743722 166743722 G T SFT2D1 Nonsense_Mutation p.S26* 0.32 TCGA-AA-A010-01 6 166912001 166912001 G A RPS6KA2 Missense_Mutation p.L256F 0.46 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 6 167343038 167343038 C A RNASET2 3'UTR 0.32 TCGA-AA-A010-01 6 167549867 167549867 C T CCR6 Missense_Mutation p.P50L 0.38 tolerated(0.08) possibly_damaging(0.873) TCGA-AA-A010-01 6 167550661 167550661 C T CCR6 Missense_Mutation p.L315F 0.37 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 6 167591959 167591959 G T TCP10L2 Missense_Mutation p.D196Y 0.22 deleterious(0.03) probably_damaging(0.98) TCGA-AA-A010-01 6 167594160 167594160 T A TCP10L2 Missense_Mutation p.F270Y 0.31 tolerated(0.07) probably_damaging(0.953) TCGA-AA-A010-01 6 167709635 167709635 C T UNC93A Missense_Mutation p.R129C 0.31 tolerated(0.06) possibly_damaging(0.631) TCGA-AA-A010-01 6 167729064 167729064 G T UNC93A 3'UTR 0.27 TCGA-AA-A010-01 6 167787900 167787900 A T TCP10 Missense_Mutation p.F243Y 0.11 tolerated(0.09) probably_damaging(0.953) TCGA-AA-A010-01 6 168363373 168363373 C T MLLT4 3'UTR 0.44 TCGA-AA-A010-01 6 169623517 169623517 C A THBS2 Missense_Mutation p.D943Y 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 169626394 169626394 C A THBS2 Splice_Site p.X807_splice 0.33 TCGA-AA-A010-01 6 169632237 169632237 C T THBS2 Silent p.A663A 0.39 TCGA-AA-A010-01 6 169648619 169648619 C T THBS2 Missense_Mutation p.D168N 0.31 tolerated(0.07) benign(0.017) TCGA-AA-A010-01 6 169648776 169648776 G A THBS2 Silent p.I115I 0.41 TCGA-AA-A010-01 6 169648842 169648842 G A THBS2 Silent p.D93D 0.30 TCGA-AA-A010-01 6 170104098 170104098 T G PHF10 3'UTR 0.32 TCGA-AA-A010-01 6 170104951 170104951 T G C6orf120 3'UTR 0.51 TCGA-AA-A010-01 6 170179373 170179373 A C ERMARD Missense_Mutation p.E612A 0.37 deleterious(0.04) benign(0.156) TCGA-AA-A010-01 6 170181481 170181481 G A ERMARD Missense_Mutation p.E637K 0.50 deleterious(0.01) benign(0.242) TCGA-AA-A010-01 6 170592333 170592333 C T DLL1 Silent p.P678P 0.41 TCGA-AA-A010-01 6 170627061 170627061 G A FAM120B Missense_Mutation p.E195K 0.37 tolerated(0.87) benign(0.056) TCGA-AA-A010-01 6 170627136 170627136 G A FAM120B Missense_Mutation p.A220T 0.23 tolerated(0.79) benign(0.02) TCGA-AA-A010-01 6 170870905 170870905 C A TBP Silent p.I27I 0.37 TCGA-AA-A010-01 6 17608450 17608450 G T FAM8A1 Missense_Mutation p.K374N 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 17616803 17616803 G A NUP153 Missense_Mutation p.S1433L 0.41 deleterious(0.01) possibly_damaging(0.763) TCGA-AA-A010-01 6 17771359 17771359 G A KIF13A Missense_Mutation p.R1523C 0.33 deleterious_low_confidence(0.02) benign(0.405) TCGA-AA-A010-01 6 17826140 17826140 G A KIF13A Nonsense_Mutation p.R549* 0.32 TCGA-AA-A010-01 6 20109980 20109980 C T MBOAT1 Missense_Mutation p.V404I 0.36 tolerated(0.43) benign(0.026) TCGA-AA-A010-01 6 20128943 20128943 G A MBOAT1 Nonsense_Mutation p.R173* 0.38 TCGA-AA-A010-01 6 2117747 2117747 C T GMDS Missense_Mutation p.R64Q 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A010-01 6 24205259 24205259 C A DCDC2 Missense_Mutation p.D332Y 0.39 deleterious(0.05) possibly_damaging(0.905) TCGA-AA-A010-01 6 24278358 24278358 C A DCDC2 Nonsense_Mutation p.E281* 0.37 TCGA-AA-A010-01 6 24353794 24353794 T C DCDC2 Intron 0.32 TCGA-AA-A010-01 6 24423689 24423689 A C MRS2 Intron 0.47 TCGA-AA-A010-01 6 24445818 24445818 T G GPLD1 Missense_Mutation p.N659T 0.31 tolerated(0.08) possibly_damaging(0.51) TCGA-AA-A010-01 6 24520766 24520766 T G ALDH5A1 Silent p.T349T 0.33 TCGA-AA-A010-01 6 24569154 24569154 G C KIAA0319 Silent p.G665G 0.43 TCGA-AA-A010-01 6 24601308 24601308 G A KIAA0319 Silent p.L8L 0.37 TCGA-AA-A010-01 6 24777492 24777492 G A GMNN Silent p.K6K 0.40 TCGA-AA-A010-01 6 24785865 24785865 G T GMNN Splice_Site p.X157_splice 0.26 TCGA-AA-A010-01 6 24786006 24786006 G A GMNN Silent p.T203T 0.40 TCGA-AA-A010-01 6 24843135 24843135 A G FAM65B Silent p.F625F 0.43 TCGA-AA-A010-01 6 24843470 24843470 C T FAM65B Missense_Mutation p.A514T 0.32 tolerated(0.33) benign(0.009) TCGA-AA-A010-01 6 25097317 25097317 C A CMAHP RNA 0.33 TCGA-AA-A010-01 6 25097403 25097403 T G CMAHP RNA 0.37 TCGA-AA-A010-01 6 25450908 25450908 A C LRRC16A Missense_Mutation p.N195H 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 6 25606347 25606347 G T LRRC16A Missense_Mutation p.K1231N 0.32 deleterious_low_confidence(0.01) benign(0.112) TCGA-AA-A010-01 6 25726523 25726523 C T HIST1H2AA Missense_Mutation p.R78H 0.44 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AA-A010-01 6 25727437 25727437 C T HIST1H2BA Missense_Mutation p.R101C 0.50 tolerated_low_confidence(0.07) benign(0.357) TCGA-AA-A010-01 6 25799020 25799020 C T SLC17A1 Missense_Mutation p.R466H 0.38 tolerated(0.34) possibly_damaging(0.8) TCGA-AA-A010-01 6 25819358 25819358 A G SLC17A1 Missense_Mutation p.V185A 0.38 tolerated(0.43) benign(0.136) TCGA-AA-A010-01 6 25917040 25917040 G A SLC17A2 Missense_Mutation p.A268V 0.40 deleterious(0) probably_damaging(0.947) TCGA-AA-A010-01 6 25923933 25923933 A C SLC17A2 Missense_Mutation p.F77C 0.41 deleterious(0.02) possibly_damaging(0.525) TCGA-AA-A010-01 6 25972315 25972315 G T TRIM38 Missense_Mutation p.Q242H 0.43 deleterious(0.04) probably_damaging(0.99) TCGA-AA-A010-01 6 25983578 25983578 G A TRIM38 Missense_Mutation p.G354D 0.36 tolerated(0.14) probably_damaging(0.982) TCGA-AA-A010-01 6 26104367 26104367 G A HIST1H4C Silent p.E64E 0.31 TCGA-AA-A010-01 6 26123939 26123939 G T HIST1H2BC Missense_Mutation p.S65Y 0.35 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AA-A010-01 6 2623641 2623641 A C C6orf195 3'UTR 0.41 TCGA-AA-A010-01 6 26273416 26273416 C T HIST1H2BI Silent p.F71F 0.39 TCGA-AA-A010-01 6 26388372 26388372 G A BTN2A2 Missense_Mutation p.A192T 0.33 tolerated(0.23) benign(0.129) TCGA-AA-A010-01 6 26390250 26390250 G A BTN2A2 Missense_Mutation p.A248T 0.41 tolerated(0.94) benign(0) TCGA-AA-A010-01 6 26431574 26431574 C A BTN2A3P RNA 0.38 TCGA-AA-A010-01 6 26467994 26467994 G T BTN2A1 Intron 0.40 TCGA-AA-A010-01 6 26509162 26509162 C A BTN1A1 Missense_Mutation p.F447L 0.41 tolerated(0.06) probably_damaging(1) TCGA-AA-A010-01 6 26637564 26637564 C T ZNF322 3'UTR 0.62 TCGA-AA-A010-01 6 26637598 26637598 G A ZNF322 Missense_Mutation p.A395V 0.10 deleterious_low_confidence(0) benign(0) TCGA-AA-A010-01 6 2685592 2685592 C T MYLK4 Silent p.A161A 0.29 TCGA-AA-A010-01 6 27114413 27114413 G T HIST1H2BK Silent p.I55I 0.33 TCGA-AA-A010-01 6 27216936 27216936 G T PRSS16 Missense_Mutation p.R132I 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 27276890 27276890 C A POM121L2 Missense_Mutation p.K1020N 0.42 tolerated(0.11) probably_damaging(0.941) TCGA-AA-A010-01 6 27278046 27278046 G T POM121L2 Missense_Mutation p.S635Y 0.35 deleterious(0) probably_damaging(0.935) TCGA-AA-A010-01 6 27279624 27279624 C T POM121L2 Missense_Mutation p.R109Q 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 27419468 27419468 G A ZNF184 Nonsense_Mutation p.R624* 0.40 TCGA-AA-A010-01 6 27440070 27440070 C T ZNF184 Missense_Mutation p.E2K 0.31 tolerated_low_confidence(0.53) benign(0.052) TCGA-AA-A010-01 6 27775332 27775332 G A HIST1H2BL Missense_Mutation p.A118V 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.796) TCGA-AA-A010-01 6 27879060 27879060 T G OR2B2 Missense_Mutation p.E346D 0.32 tolerated_low_confidence(0.57) unknown(0) TCGA-AA-A010-01 6 27925301 27925301 C T OR2B6 Missense_Mutation p.R95C 0.38 deleterious(0.02) benign(0.002) TCGA-AA-A010-01 6 28135021 28135021 C A ZNF192P1 RNA 0.43 TCGA-AA-A010-01 6 28228377 28228377 G A NKAPL 3'UTR 0.35 TCGA-AA-A010-01 6 28228576 28228576 G T NKAPL 3'UTR 0.31 TCGA-AA-A010-01 6 28228617 28228617 C A NKAPL 3'UTR 0.29 TCGA-AA-A010-01 6 28297436 28297436 C T ZSCAN31 Missense_Mutation p.D9N 0.28 tolerated(0.27) benign(0) TCGA-AA-A010-01 6 28359376 28359376 C T ZSCAN12 Missense_Mutation p.E231K 0.35 tolerated(0.87) benign(0.083) TCGA-AA-A010-01 6 28360769 28360769 G A ZSCAN12 Nonsense_Mutation p.R153* 0.37 TCGA-AA-A010-01 6 28402208 28402208 G T ZSCAN23 3'UTR 0.19 TCGA-AA-A010-01 6 28472228 28472228 G T GPX6 Silent p.L169L 0.41 TCGA-AA-A010-01 6 28473495 28473495 G T GPX6 Silent p.V148V 0.09 TCGA-AA-A010-01 6 28474207 28474207 C A GPX6 Splice_Site p.X81_splice 0.39 TCGA-AA-A010-01 6 28540143 28540143 G A SCAND3 Nonsense_Mutation p.R1175* 0.29 TCGA-AA-A010-01 6 28540283 28540283 G T SCAND3 Nonsense_Mutation p.S1128* 0.38 TCGA-AA-A010-01 6 28541036 28541036 C A SCAND3 Missense_Mutation p.R877L 0.39 deleterious(0.01) possibly_damaging(0.496) TCGA-AA-A010-01 6 28543361 28543361 C A SCAND3 Missense_Mutation p.R374I 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.548) TCGA-AA-A010-01 6 28829410 28829410 C A XXbac-BPG308K3.6 RNA 0.30 TCGA-AA-A010-01 6 2890284 2890284 G T SERPINB9 3'UTR 0.45 TCGA-AA-A010-01 6 28963394 28963394 C A ZNF311 Missense_Mutation p.R462I 0.38 deleterious(0.01) possibly_damaging(0.747) TCGA-AA-A010-01 6 28963847 28963847 G A ZNF311 Missense_Mutation p.A311V 0.41 tolerated(0.09) benign(0.202) TCGA-AA-A010-01 6 29012270 29012270 G A OR2W1 Missense_Mutation p.T228M 0.39 tolerated(0.28) benign(0) TCGA-AA-A010-01 6 29012302 29012302 G T OR2W1 Silent p.S217S 0.34 TCGA-AA-A010-01 6 29012751 29012751 A C OR2W1 Missense_Mutation p.F68V 0.18 deleterious(0.04) benign(0.419) TCGA-AA-A010-01 6 29012853 29012853 A C OR2W1 Missense_Mutation p.F34V 0.40 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A010-01 6 29054021 29054021 G T OR2B3 3'UTR 0.35 TCGA-AA-A010-01 6 29080574 29080574 G A OR2J3 Missense_Mutation p.A303T 0.38 deleterious(0.01) benign(0.206) TCGA-AA-A010-01 6 292419 292419 G A DUSP22 5'UTR 0.24 TCGA-AA-A010-01 6 292421 292421 G A DUSP22 5'UTR 0.32 TCGA-AA-A010-01 6 29275091 29275091 T G OR14J1 Missense_Mutation p.L209V 0.33 deleterious(0.04) possibly_damaging(0.755) TCGA-AA-A010-01 6 29275266 29275266 C A OR14J1 Missense_Mutation p.T267N 0.33 tolerated(0.1) benign(0.356) TCGA-AA-A010-01 6 29342003 29342003 A C OR12D3 3'UTR 0.21 TCGA-AA-A010-01 6 29342156 29342156 G T OR12D3 Silent p.I303I 0.34 TCGA-AA-A010-01 6 29365416 29365416 G T OR12D2 3'UTR 0.64 TCGA-AA-A010-01 6 29429449 29429449 C T OR2H1 5'UTR 0.49 TCGA-AA-A010-01 6 29430366 29430366 C A OR2H1 Missense_Mutation p.L274I 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 6 29430722 29430722 C A OR2H1 3'UTR 0.35 TCGA-AA-A010-01 6 29431505 29431505 A C OR2H1 3'UTR 0.38 TCGA-AA-A010-01 6 29556271 29556271 C T OR2H2 Nonsense_Mutation p.R184* 0.41 TCGA-AA-A010-01 6 29556431 29556431 G T OR2H2 Missense_Mutation p.G237V 0.35 deleterious(0.02) probably_damaging(0.921) TCGA-AA-A010-01 6 29581254 29581254 C T GABBR1 Silent p.Q444Q 0.32 TCGA-AA-A010-01 6 29633971 29633971 C T MOG Missense_Mutation p.A160V 0.42 tolerated(0.13) possibly_damaging(0.715) TCGA-AA-A010-01 6 29638506 29638506 C T MOG Intron 0.32 TCGA-AA-A010-01 6 29640583 29640583 C T ZFP57 Nonsense_Mutation p.W435* 0.34 TCGA-AA-A010-01 6 29796591 29796591 C T HLA-G Silent p.R205R 0.34 TCGA-AA-A010-01 6 29943231 29943231 C T HCG9 RNA 0.36 TCGA-AA-A010-01 6 29975999 29975999 C A ZNRD1-AS1 Intron 0.47 TCGA-AA-A010-01 6 30104710 30104710 G A TRIM40 5'Flank 0.44 TCGA-AA-A010-01 6 30657089 30657089 G A NRM Silent p.L157L 0.36 TCGA-AA-A010-01 6 30668113 30668113 G T MDC1 3'UTR 0.35 TCGA-AA-A010-01 6 30709076 30709076 G T FLOT1 Missense_Mutation p.A82E 0.46 tolerated(0.27) possibly_damaging(0.608) TCGA-AA-A010-01 6 30919912 30919912 C T DPCR1 Missense_Mutation p.A1224V 0.33 tolerated(0.46) possibly_damaging(0.556) TCGA-AA-A010-01 6 30951657 30951657 G T MUC21 5'UTR 0.35 TCGA-AA-A010-01 6 31125193 31125193 C T CCHCR1 Missense_Mutation p.S62N 0.41 tolerated_low_confidence(0.39) benign(0.003) TCGA-AA-A010-01 6 31431324 31431324 C A HCP5 RNA 0.40 TCGA-AA-A010-01 6 3152726 3152726 C T BPHL Missense_Mutation p.H265Y 0.33 tolerated(0.28) benign(0.027) TCGA-AA-A010-01 6 31545089 31545089 C T TNF Silent p.I159I 0.38 TCGA-AA-A010-01 6 3154625 3154625 G A TUBB2A Silent p.F270F 0.39 TCGA-AA-A010-01 6 31608918 31608918 T C BAG6 Missense_Mutation p.Q887R 0.48 deleterious(0.01) possibly_damaging(0.885) TCGA-AA-A010-01 6 31677952 31677952 G T LY6G6F Missense_Mutation p.G266C 0.38 tolerated(0.19) benign(0) TCGA-AA-A010-01 6 31687972 31687972 G A LY6G6C Missense_Mutation p.R21C 0.39 deleterious(0.01) possibly_damaging(0.897) TCGA-AA-A010-01 6 31729320 31729320 C A MSH5 Silent p.I704I 0.29 TCGA-AA-A010-01 6 31744505 31744505 G T VWA7 Missense_Mutation p.L18M 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A010-01 6 31762930 31762930 G A VARS Missense_Mutation p.A22V 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A010-01 6 31779514 31779514 T G HSPA1L Missense_Mutation p.K79T 0.41 deleterious_low_confidence(0) benign(0.356) TCGA-AA-A010-01 6 31807367 31807367 G A C6orf48 Missense_Mutation p.R52K 0.39 benign(0.14) TCGA-AA-A010-01 6 31833833 31833833 A C SLC44A4 Missense_Mutation p.I435S 0.32 deleterious(0.01) benign(0.102) TCGA-AA-A010-01 6 31913950 31913950 G T CFB 5'UTR 0.43 TCGA-AA-A010-01 6 31914333 31914333 G A CFB Missense_Mutation p.S585N 0.33 deleterious(0.04) benign(0.059) TCGA-AA-A010-01 6 31915759 31915759 A G CFB Silent p.S768S 0.39 TCGA-AA-A010-01 6 31931487 31931487 A G SKIV2L Missense_Mutation p.T542A 0.39 tolerated(0.51) benign(0.005) TCGA-AA-A010-01 6 31974220 31974220 A C AL645922.1 Intron 0.39 TCGA-AA-A010-01 6 31975192 31975192 G T C4A 3'Flank 0.37 TCGA-AA-A010-01 6 32015559 32015559 G T TNXB 5'Flank 0.47 TCGA-AA-A010-01 6 32039837 32039837 C A TNXB Missense_Mutation p.K1640N 0.38 probably_damaging(0.995) TCGA-AA-A010-01 6 32096903 32096903 C A FKBPL Nonsense_Mutation p.E219* 0.31 TCGA-AA-A010-01 6 32097116 32097116 C T FKBPL Missense_Mutation p.V148I 0.41 tolerated(0.42) benign(0.001) TCGA-AA-A010-01 6 32118163 32118163 C T PRRT1 Silent p.P180P 0.33 TCGA-AA-A010-01 6 32156517 32156517 T C PBX2 Missense_Mutation p.E93G 0.36 deleterious(0) benign(0.208) TCGA-AA-A010-01 6 3225042 3225042 G A TUBB2B Silent p.D427D 0.34 TCGA-AA-A010-01 6 32260745 32260745 A - C6orf10 3'UTR 0.33 TCGA-AA-A010-01 6 32335723 32335723 G T C6orf10 Missense_Mutation p.L49M 0.39 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 6 32370821 32370821 G T BTNL2 Missense_Mutation p.F200L 0.41 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 6 3267939 3267939 A T PSMG4 Missense_Mutation p.K161M 0.44 tolerated(0.05) probably_damaging(0.999) TCGA-AA-A010-01 6 32780861 32780861 C T HLA-DOB 3'UTR 0.42 TCGA-AA-A010-01 6 32796738 32796738 G A TAP2 Intron 0.31 TCGA-AA-A010-01 6 3284140 3284140 G A SLC22A23 Missense_Mutation p.A550V 0.34 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 6 32918419 32918419 C T HLA-DMA Missense_Mutation p.E84K 0.36 deleterious(0.02) possibly_damaging(0.769) TCGA-AA-A010-01 6 32918456 32918456 G A HLA-DMA Silent p.F71F 0.29 TCGA-AA-A010-01 6 33131496 33131496 G A COL11A2 Missense_Mutation p.R1638W 0.35 unknown(0) TCGA-AA-A010-01 6 33145441 33145441 A C COL11A2 Missense_Mutation p.L553V 0.41 possibly_damaging(0.567) TCGA-AA-A010-01 6 33146701 33146701 A G COL11A2 Missense_Mutation p.V468A 0.36 possibly_damaging(0.68) TCGA-AA-A010-01 6 33171324 33171324 C T SLC39A7 Missense_Mutation p.R382C 0.41 tolerated(0.27) benign(0.066) TCGA-AA-A010-01 6 3324086 3324086 A G SLC22A23 Missense_Mutation p.L355P 0.32 deleterious(0) benign(0.098) TCGA-AA-A010-01 6 33256619 33256619 C T WDR46 Missense_Mutation p.E81K 0.33 tolerated(0.37) benign(0.03) TCGA-AA-A010-01 6 33281187 33281187 C A TAPBP Missense_Mutation p.E92D 0.44 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 6 33405513 33405513 G T SYNGAP1 Missense_Mutation p.K277N 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 6 33419675 33419675 G T SYNGAP1 Missense_Mutation p.D1342Y 0.37 deleterious_low_confidence(0) benign(0.282) TCGA-AA-A010-01 6 33541526 33541526 C T BAK1 3'UTR 0.35 TCGA-AA-A010-01 6 33541927 33541927 C T BAK1 Missense_Mutation p.A139T 0.40 deleterious(0.05) possibly_damaging(0.816) TCGA-AA-A010-01 6 33560895 33560895 C T GGNBP1 3'Flank 0.26 TCGA-AA-A010-01 6 33631599 33631599 G A ITPR3 Missense_Mutation p.A364T 0.28 deleterious(0.05) probably_damaging(0.957) TCGA-AA-A010-01 6 33668258 33668258 G A UQCC2 Silent p.G82G 0.41 TCGA-AA-A010-01 6 34498093 34498093 C T PACSIN1 Missense_Mutation p.R288C 0.40 deleterious(0) possibly_damaging(0.771) TCGA-AA-A010-01 6 34803077 34803077 G T UHRF1BP1 Missense_Mutation p.D226Y 0.39 deleterious(0) probably_damaging(0.948) TCGA-AA-A010-01 6 34826286 34826286 T A UHRF1BP1 Missense_Mutation p.F718Y 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 6 35087105 35087105 C A TCP11 Missense_Mutation p.K406N 0.36 deleterious(0.05) possibly_damaging(0.694) TCGA-AA-A010-01 6 35216499 35216499 G T SCUBE3 3'UTR 0.30 TCGA-AA-A010-01 6 35280224 35280224 C T DEF6 Missense_Mutation p.S190L 0.33 deleterious(0.01) possibly_damaging(0.647) TCGA-AA-A010-01 6 35442806 35442806 G T TEAD3 3'UTR 0.38 TCGA-AA-A010-01 6 35715391 35715391 G T ARMC12 Missense_Mutation p.K246N 0.38 tolerated(0.82) benign(0.109) TCGA-AA-A010-01 6 35773618 35773618 G A LHFPL5 Silent p.P57P 0.41 TCGA-AA-A010-01 6 35825105 35825105 C T SRPK1 Missense_Mutation p.R518H 0.35 deleterious(0.01) possibly_damaging(0.58) TCGA-AA-A010-01 6 35911609 35911609 A G SLC26A8 3'UTR 0.27 TCGA-AA-A010-01 6 35923191 35923191 G A SLC26A8 Missense_Mutation p.S657F 0.34 deleterious(0.04) possibly_damaging(0.905) TCGA-AA-A010-01 6 36041480 36041480 G A MAPK14 Missense_Mutation p.A144T 0.41 deleterious(0) possibly_damaging(0.873) TCGA-AA-A010-01 6 36291965 36291965 C A C6orf222 Nonsense_Mutation p.E391* 0.31 TCGA-AA-A010-01 6 36355467 36355467 C A ETV7 5'UTR 0.42 TCGA-AA-A010-01 6 36483112 36483112 T C STK38 Intron 0.37 TCGA-AA-A010-01 6 37140890 37140890 C T PIM1 Silent p.F242F 0.36 TCGA-AA-A010-01 6 37186635 37186635 T C TMEM217 Missense_Mutation p.N58D 0.33 tolerated(0.41) benign(0) TCGA-AA-A010-01 6 37328339 37328339 A G RNF8 Missense_Mutation p.M77V 0.18 deleterious(0.03) benign(0.195) TCGA-AA-A010-01 6 37358517 37358517 G A RNF8 Splice_Site p.X481_splice 0.29 TCGA-AA-A010-01 6 37430663 37430663 G A CMTR1 Missense_Mutation p.A462T 0.36 tolerated(0.51) benign(0) TCGA-AA-A010-01 6 37440242 37440242 G A CMTR1 Silent p.S556S 0.33 TCGA-AA-A010-01 6 37445404 37445404 G T CMTR1 Missense_Mutation p.K714N 0.38 deleterious(0.03) benign(0.398) TCGA-AA-A010-01 6 38312792 38312792 T C BTBD9 Missense_Mutation p.N411S 0.19 tolerated(0.93) benign(0.403) TCGA-AA-A010-01 6 38702336 38702336 G T DNAH8 Nonsense_Mutation p.G16* 0.38 TCGA-AA-A010-01 6 38825349 38825349 G A DNAH8 Missense_Mutation p.R1713H 0.35 benign(0) TCGA-AA-A010-01 6 38834411 38834411 A C DNAH8 Missense_Mutation p.K1964N 0.33 probably_damaging(0.998) TCGA-AA-A010-01 6 38858431 38858431 T G DNAH8 Missense_Mutation p.I2609S 0.40 benign(0.008) TCGA-AA-A010-01 6 38899645 38899645 C T DNAH8 Missense_Mutation p.T3561M 0.22 probably_damaging(0.998) TCGA-AA-A010-01 6 39507857 39507857 G A KIF6 Nonsense_Mutation p.R523* 0.41 TCGA-AA-A010-01 6 39851870 39851870 C A DAAM2 Intron 0.42 TCGA-AA-A010-01 6 40360142 40360142 C T LRFN2 Missense_Mutation p.R637Q 0.32 tolerated(0.54) benign(0.048) TCGA-AA-A010-01 6 40360154 40360154 G A LRFN2 Missense_Mutation p.A633V 0.33 tolerated(0.26) benign(0.025) TCGA-AA-A010-01 6 40400282 40400282 C A LRFN2 Missense_Mutation p.G191C 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 4044204 4044204 T G PRPF4B Missense_Mutation p.F603C 0.33 deleterious(0) unknown(0) TCGA-AA-A010-01 6 4068873 4068873 C A FAM217A 3'UTR 0.29 TCGA-AA-A010-01 6 40998408 40998408 C T UNC5CL Silent p.P402P 0.43 TCGA-AA-A010-01 6 40999797 40999797 G T UNC5CL Silent p.S343S 0.32 TCGA-AA-A010-01 6 41121518 41121518 G T TREML1 Silent p.V118V 0.41 TCGA-AA-A010-01 6 41704595 41704595 C T PGC Missense_Mutation p.A388T 0.39 deleterious(0.01) possibly_damaging(0.732) TCGA-AA-A010-01 6 41710170 41710170 T C PGC Missense_Mutation p.T169A 0.34 tolerated(0.29) benign(0.001) TCGA-AA-A010-01 6 42175975 42175975 C A MRPS10 3'UTR 0.39 TCGA-AA-A010-01 6 42615888 42615888 C T UBR2 Silent p.I814I 0.38 TCGA-AA-A010-01 6 42627579 42627579 T G UBR2 Missense_Mutation p.F1143C 0.35 tolerated(0.18) benign(0) TCGA-AA-A010-01 6 42712883 42712883 C A TBCC Missense_Mutation p.R310M 0.35 deleterious(0) possibly_damaging(0.871) TCGA-AA-A010-01 6 42893335 42893335 G T PTCRA Missense_Mutation p.R254I 0.29 deleterious_low_confidence(0.05) benign(0.227) TCGA-AA-A010-01 6 42942766 42942766 T C PEX6 Missense_Mutation p.E298G 0.39 deleterious(0.04) benign(0.002) TCGA-AA-A010-01 6 42981069 42981069 G T MEA1 Silent p.I29I 0.40 TCGA-AA-A010-01 6 43097542 43097542 C T PTK7 Missense_Mutation p.R157C 0.29 deleterious(0) probably_damaging(0.956) TCGA-AA-A010-01 6 43156416 43156416 C T CUL9 Missense_Mutation p.R715W 0.40 tolerated(0.05) possibly_damaging(0.77) TCGA-AA-A010-01 6 43220512 43220512 C A TTBK1 Silent p.I48I 0.31 TCGA-AA-A010-01 6 43225609 43225609 C A TTBK1 Silent p.A307A 0.39 TCGA-AA-A010-01 6 43406463 43406463 T G ABCC10 Missense_Mutation p.F686C 0.43 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 6 43416887 43416887 C A ABCC10 Missense_Mutation p.S1383Y 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 43471004 43471004 T G TJAP1 Intron 0.50 TCGA-AA-A010-01 6 43612905 43612905 C A RSPH9 Missense_Mutation p.R24S 0.48 tolerated(0.09) possibly_damaging(0.858) TCGA-AA-A010-01 6 43623316 43623316 G T RSPH9 Intron 0.45 TCGA-AA-A010-01 6 43752377 43752377 C T VEGFA 3'Flank 0.33 TCGA-AA-A010-01 6 43970694 43970694 G A C6orf223 Missense_Mutation p.G187D 0.45 tolerated_low_confidence(0.33) unknown(0) TCGA-AA-A010-01 6 44081706 44081706 G A MRPL14 Silent p.N104N 0.30 TCGA-AA-A010-01 6 44122146 44122146 A G TMEM63B Silent p.G757G 0.25 TCGA-AA-A010-01 6 44221232 44221232 A G HSP90AB1 Missense_Mutation p.D691G 0.50 deleterious(0.01) probably_damaging(0.982) TCGA-AA-A010-01 6 44228214 44228214 G A NFKBIE Missense_Mutation p.R391W 0.37 deleterious(0) possibly_damaging(0.773) TCGA-AA-A010-01 6 44248082 44248082 G T TCTE1 Missense_Mutation p.L448I 0.30 tolerated(0.24) benign(0.047) TCGA-AA-A010-01 6 44268931 44268931 G A AARS2 Missense_Mutation p.P919S 0.37 tolerated(0.33) benign(0.219) TCGA-AA-A010-01 6 44929547 44929547 G A SUPT3H Nonsense_Mutation p.R186* 0.34 TCGA-AA-A010-01 6 45390014 45390014 A G RUNX2 Intron 0.44 TCGA-AA-A010-01 6 46659045 46659045 G A TDRD6 Silent p.K1060K 0.39 TCGA-AA-A010-01 6 46659534 46659534 A G TDRD6 Silent p.E1223E 0.07 TCGA-AA-A010-01 6 46659800 46659800 C A TDRD6 Missense_Mutation p.S1312Y 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 46719744 46719744 A C ANKRD66 Missense_Mutation p.D75A 0.38 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 6 46726470 46726470 G A ANKRD66 Missense_Mutation p.E190K 0.42 tolerated(0.06) benign(0.06) TCGA-AA-A010-01 6 46800871 46800871 G A MEP1A Missense_Mutation p.R402H 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 47221018 47221018 G A TNFRSF21 Missense_Mutation p.R495C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 47277225 47277225 C A TNFRSF21 Missense_Mutation p.S8I 0.42 tolerated_low_confidence(0.13) unknown(0) TCGA-AA-A010-01 6 47471073 47471073 G A CD2AP Missense_Mutation p.R21Q 0.34 deleterious(0.02) benign(0.104) TCGA-AA-A010-01 6 47501423 47501423 G A CD2AP Missense_Mutation p.R84Q 0.29 deleterious(0) benign(0.185) TCGA-AA-A010-01 6 47512442 47512442 G T CD2AP Missense_Mutation p.E140D 0.29 deleterious(0) benign(0.326) TCGA-AA-A010-01 6 47649193 47649193 G T GPR111 Missense_Mutation p.D300Y 0.28 deleterious(0.03) probably_damaging(0.935) TCGA-AA-A010-01 6 47759709 47759709 G A OPN5 Splice_Site p.X141_splice 0.30 TCGA-AA-A010-01 6 47846112 47846112 G T PTCHD4 Missense_Mutation p.A823D 0.31 tolerated(0.4) probably_damaging(0.987) TCGA-AA-A010-01 6 47976675 47976675 A C PTCHD4 Missense_Mutation p.L201R 0.36 tolerated(0.34) probably_damaging(0.985) TCGA-AA-A010-01 6 486720 486720 A G EXOC2 Missense_Mutation p.L909S 0.34 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 6 49425612 49425613 - T MUT Frame_Shift_Ins p.M182Nfs*29 0.21 TCGA-AA-A010-01 6 49483394 49483394 G A GLYATL3 Missense_Mutation p.R36H 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 6 49489471 49489471 G T GLYATL3 Missense_Mutation p.D143Y 0.33 deleterious(0) benign(0.424) TCGA-AA-A010-01 6 49754076 49754076 C A PGK2 Missense_Mutation p.K275N 0.36 deleterious(0.05) benign(0.018) TCGA-AA-A010-01 6 4995492 4995492 C T RPP40 Silent p.P304P 0.33 TCGA-AA-A010-01 6 50681704 50681704 T - TFAP2D 5'UTR 0.33 TCGA-AA-A010-01 6 51609186 51609186 C T PKHD1 Missense_Mutation p.A3385T 0.27 tolerated(1) benign(0.002) TCGA-AA-A010-01 6 51609338 51609338 T G PKHD1 Missense_Mutation p.K3334T 0.35 tolerated(0.19) benign(0.007) TCGA-AA-A010-01 6 51611557 51611557 T C PKHD1 Silent p.K3320K 0.38 TCGA-AA-A010-01 6 52271849 52271849 G T PAQR8 3'UTR 0.42 TCGA-AA-A010-01 6 52319011 52319011 G A EFHC1 Missense_Mutation p.R281Q 0.33 tolerated(0.57) benign(0.064) TCGA-AA-A010-01 6 52993334 52993334 G T GCM1 Missense_Mutation p.F327L 0.39 tolerated(0.48) benign(0.002) TCGA-AA-A010-01 6 53010488 53010488 G T GCM1 5'UTR 0.42 TCGA-AA-A010-01 6 53365257 53365257 A G GCLC Missense_Mutation p.F484L 0.34 deleterious(0.01) possibly_damaging(0.859) TCGA-AA-A010-01 6 53374018 53374018 C T GCLC Missense_Mutation p.A262T 0.40 deleterious(0) probably_damaging(0.941) TCGA-AA-A010-01 6 54095540 54095540 C T MLIP Missense_Mutation p.S381L 0.31 tolerated(0.21) possibly_damaging(0.596) TCGA-AA-A010-01 6 54791223 54791223 G A FAM83B Missense_Mutation p.V167I 0.33 tolerated(0.1) benign(0.117) TCGA-AA-A010-01 6 55147219 55147219 A G HCRTR2 Silent p.A434A 0.38 TCGA-AA-A010-01 6 55378895 55378895 A T HMGCLL1 Missense_Mutation p.F195I 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 6 55620350 55620350 C T BMP5 Missense_Mutation p.R449H 0.21 deleterious(0) probably_damaging(0.928) TCGA-AA-A010-01 6 56032925 56032925 A C COL21A1 Silent p.V399V 0.34 TCGA-AA-A010-01 6 56035867 56035867 G T COL21A1 Missense_Mutation p.L234I 0.44 tolerated(0.11) possibly_damaging(0.829) TCGA-AA-A010-01 6 56425201 56425201 C T DST Silent p.K2154K 0.34 TCGA-AA-A010-01 6 56458881 56458881 C A DST Missense_Mutation p.E1479D 0.34 benign(0.003) TCGA-AA-A010-01 6 56463285 56463285 C A DST Nonsense_Mutation p.E1350* 0.33 TCGA-AA-A010-01 6 56469897 56469897 C A DST Intron 0.36 TCGA-AA-A010-01 6 56470187 56470187 T - DST Intron 0.28 TCGA-AA-A010-01 6 56481267 56481267 A G DST Intron 0.44 TCGA-AA-A010-01 6 56483461 56483461 C A DST Intron 0.38 TCGA-AA-A010-01 6 56484238 56484238 C A DST Intron 0.38 TCGA-AA-A010-01 6 56492013 56492013 C A DST Missense_Mutation p.A1034S 0.34 benign(0.021) TCGA-AA-A010-01 6 56497768 56497768 A C DST Missense_Mutation p.F693C 0.30 probably_damaging(0.999) TCGA-AA-A010-01 6 56504259 56504259 C A DST Missense_Mutation p.D413Y 0.37 possibly_damaging(0.771) TCGA-AA-A010-01 6 56510787 56510787 C A DST 5'Flank 0.35 TCGA-AA-A010-01 6 56707887 56707887 G T RP11-472M19.2 5'Flank 0.36 TCGA-AA-A010-01 6 56716259 56716259 C T RP11-472M19.2 Intron 0.33 TCGA-AA-A010-01 6 56765395 56765395 G T DST Missense_Mutation p.L81I 0.47 tolerated_low_confidence(0.97) benign(0) TCGA-AA-A010-01 6 56965709 56965709 G T ZNF451 Intron 0.42 TCGA-AA-A010-01 6 56993581 56993581 G T ZNF451 Nonsense_Mutation p.G123* 0.35 TCGA-AA-A010-01 6 57055194 57055194 G T RAB23 3'UTR 0.41 TCGA-AA-A010-01 6 57246914 57246914 T A PRIM2 Missense_Mutation p.I214N 0.27 deleterious(0) possibly_damaging(0.789) TCGA-AA-A010-01 6 6196037 6196037 A G F13A1 Missense_Mutation p.F433S 0.37 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 6 637784 637784 C T EXOC2 Missense_Mutation p.G12D 0.41 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 6 63989948 63989948 T G LGSN Missense_Mutation p.K503T 0.35 deleterious(0) possibly_damaging(0.54) TCGA-AA-A010-01 6 64286869 64286869 G A PTP4A1 Silent p.A28A 0.38 TCGA-AA-A010-01 6 64394927 64394927 T C PHF3 Missense_Mutation p.I435T 0.41 tolerated_low_confidence(0.28) benign(0.004) TCGA-AA-A010-01 6 64401837 64401837 G T PHF3 Missense_Mutation p.M800I 0.40 tolerated(0.25) benign(0.003) TCGA-AA-A010-01 6 64421713 64421713 G T PHF3 Missense_Mutation p.R1410I 0.35 deleterious(0) probably_damaging(0.957) TCGA-AA-A010-01 6 64422671 64422671 G T PHF3 Missense_Mutation p.Q1729H 0.32 tolerated(0.28) benign(0) TCGA-AA-A010-01 6 64423356 64423356 G T PHF3 Missense_Mutation p.D1958Y 0.42 deleterious(0) probably_damaging(0.962) TCGA-AA-A010-01 6 64516110 64516110 T G EYS Missense_Mutation p.I2462L 0.40 tolerated(0.28) benign(0.009) TCGA-AA-A010-01 6 65149246 65149246 C A EYS Splice_Site p.X1882_splice 0.26 TCGA-AA-A010-01 6 65300600 65300600 C A EYS Missense_Mutation p.E1720D 0.40 tolerated_low_confidence(1) benign(0) TCGA-AA-A010-01 6 65336127 65336127 C T EYS Missense_Mutation p.G1152E 0.30 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 6 65612390 65612390 A C EYS Missense_Mutation p.F882C 0.34 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 6 69703739 69703739 T C BAI3 Missense_Mutation p.L605S 0.32 tolerated(0.1) possibly_damaging(0.864) TCGA-AA-A010-01 6 70951131 70951131 C A COL9A1 Missense_Mutation p.K675N 0.39 probably_damaging(0.999) TCGA-AA-A010-01 6 70991095 70991095 C T COL9A1 Missense_Mutation p.D292N 0.35 unknown(0) TCGA-AA-A010-01 6 71012697 71012697 C A COL9A1 5'UTR 0.46 TCGA-AA-A010-01 6 71234375 71234375 G A FAM135A Missense_Mutation p.A530T 0.36 tolerated(0.3) benign(0.048) TCGA-AA-A010-01 6 71234609 71234609 C A FAM135A Missense_Mutation p.L608I 0.42 tolerated(0.25) benign(0.088) TCGA-AA-A010-01 6 71569851 71569851 G A B3GAT2 3'UTR 0.31 TCGA-AA-A010-01 6 71571554 71571554 C T B3GAT2 Silent p.P288P 0.38 TCGA-AA-A010-01 6 72889584 72889584 T C RIMS1 Missense_Mutation p.S260P 0.29 tolerated(0.13) benign(0.115) TCGA-AA-A010-01 6 7290155 7290155 G A SSR1 Missense_Mutation p.S268L 0.39 deleterious(0) probably_damaging(0.911) TCGA-AA-A010-01 6 73000508 73000508 T G RIMS1 Missense_Mutation p.C1227W 0.37 tolerated(0.18) probably_damaging(0.994) TCGA-AA-A010-01 6 73110427 73110427 C T RIMS1 3'Flank 0.37 TCGA-AA-A010-01 6 73904501 73904501 C T KCNQ5 Silent p.S740S 0.38 TCGA-AA-A010-01 6 74079353 74079353 C A OOEP Nonsense_Mutation p.E55* 0.35 TCGA-AA-A010-01 6 74104868 74104868 C T DDX43 Silent p.G80G 0.29 TCGA-AA-A010-01 6 74155427 74155427 A G MB21D1 Missense_Mutation p.V234A 0.36 tolerated(0.1) benign(0.417) TCGA-AA-A010-01 6 74477802 74477802 G A CD109 Missense_Mutation p.A508T 0.33 tolerated(0.11) benign(0.363) TCGA-AA-A010-01 6 74498258 74498258 G A CD109 Missense_Mutation p.S875N 0.43 tolerated(0.21) benign(0.002) TCGA-AA-A010-01 6 75855879 75855879 G A COL12A1 Missense_Mutation p.A1500V 0.50 benign(0.036) TCGA-AA-A010-01 6 7585652 7585652 G A DSP Silent p.P2719P 0.43 TCGA-AA-A010-01 6 75860945 75860945 G T COL12A1 Silent p.T1353T 0.43 TCGA-AA-A010-01 6 75860986 75860986 C T COL12A1 Missense_Mutation p.E1340K 0.33 probably_damaging(0.998) TCGA-AA-A010-01 6 75875453 75875453 T G COL12A1 Missense_Mutation p.D918A 0.32 benign(0.336) TCGA-AA-A010-01 6 75893251 75893251 C A COL12A1 Missense_Mutation p.S469I 0.38 probably_damaging(0.999) TCGA-AA-A010-01 6 75904570 75904570 C A COL12A1 Missense_Mutation p.R56I 0.31 possibly_damaging(0.583) TCGA-AA-A010-01 6 76022168 76022168 C A FILIP1 Missense_Mutation p.S1127I 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 6 76532553 76532553 G T MYO6 Missense_Mutation p.D58Y 0.27 deleterious(0.02) unknown(0) TCGA-AA-A010-01 6 76621388 76621388 G T MYO6 Splice_Site p.X1138_splice 0.49 TCGA-AA-A010-01 6 76623878 76623878 G A MYO6 Missense_Mutation p.D1180N 0.34 tolerated(0.15) possibly_damaging(0.636) TCGA-AA-A010-01 6 76751634 76751634 G A IMPG1 Missense_Mutation p.L93F 0.42 tolerated(0.15) probably_damaging(0.92) TCGA-AA-A010-01 6 76782165 76782165 A C IMPG1 Missense_Mutation p.I14S 0.40 deleterious(0.01) benign(0.084) TCGA-AA-A010-01 6 78173081 78173081 C T HTR1B Missense_Mutation p.A14T 0.41 tolerated_low_confidence(0.72) benign(0.008) TCGA-AA-A010-01 6 7904929 7904929 C T TXNDC5 Silent p.P97P 0.41 TCGA-AA-A010-01 6 79650745 79650745 G A PHIP Missense_Mutation p.R1711C 0.37 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-AA-A010-01 6 79692617 79692617 C A PHIP Nonsense_Mutation p.E919* 0.26 TCGA-AA-A010-01 6 79697996 79697996 C T PHIP Missense_Mutation p.R797H 0.39 tolerated(0.21) benign(0.387) TCGA-AA-A010-01 6 82925890 82925890 G A IBTK Nonsense_Mutation p.R502* 0.38 TCGA-AA-A010-01 6 83900572 83900572 T G PGM3 Missense_Mutation p.K82Q 0.38 tolerated(0.33) benign(0.052) TCGA-AA-A010-01 6 8415174 8415174 G A SLC35B3 Missense_Mutation p.S341L 0.21 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 6 84234148 84234148 G A PRSS35 Missense_Mutation p.E330K 0.41 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 6 84265878 84265878 G T SNAP91 Missense_Mutation p.F906L 0.43 deleterious(0) probably_damaging(0.914) TCGA-AA-A010-01 6 84303386 84303386 T C SNAP91 Missense_Mutation p.T503A 0.33 tolerated(0.11) benign(0.217) TCGA-AA-A010-01 6 84567103 84567103 A C RIPPLY2 Missense_Mutation p.N128H 0.42 deleterious_low_confidence(0.03) benign(0.032) TCGA-AA-A010-01 6 84884952 84884952 G A KIAA1009 Missense_Mutation p.S593F 0.41 tolerated(0.54) benign(0.012) TCGA-AA-A010-01 6 85446469 85446469 G T TBX18 Missense_Mutation p.F586L 0.45 tolerated_low_confidence(1) probably_damaging(0.931) TCGA-AA-A010-01 6 86324746 86324746 C T SYNCRIP Missense_Mutation p.G534S 0.39 tolerated(0.13) unknown(0) TCGA-AA-A010-01 6 87725364 87725364 C A HTR1E Silent p.T104T 0.45 TCGA-AA-A010-01 6 87726329 87726329 C T HTR1E 3'UTR 0.44 TCGA-AA-A010-01 6 87928396 87928396 A C ZNF292 Missense_Mutation p.K162T 0.37 tolerated(0.42) benign(0.417) TCGA-AA-A010-01 6 87965339 87965339 C A ZNF292 Silent p.S664S 0.32 TCGA-AA-A010-01 6 87965683 87965683 C T ZNF292 Missense_Mutation p.A779V 0.33 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 6 87967924 87967924 C T ZNF292 Missense_Mutation p.T1526M 0.47 tolerated_low_confidence(0.06) benign(0.336) TCGA-AA-A010-01 6 87968763 87968763 T G ZNF292 Missense_Mutation p.L1806V 0.40 tolerated_low_confidence(0.42) benign(0.025) TCGA-AA-A010-01 6 87969690 87969690 C T ZNF292 Nonsense_Mutation p.R2115* 0.76 TCGA-AA-A010-01 6 88119651 88119651 C A C6ORF165 Missense_Mutation p.L32M 0.34 deleterious(0) probably_damaging(0.947) TCGA-AA-A010-01 6 88173773 88173773 A C C6ORF165 Missense_Mutation p.Q558H 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 6 88326097 88326097 C A ORC3 Silent p.I313I 0.31 TCGA-AA-A010-01 6 88387558 88387558 T G AKIRIN2 Missense_Mutation p.E169D 0.33 deleterious(0.01) benign(0.078) TCGA-AA-A010-01 6 88854740 88854740 G T CNR1 Missense_Mutation p.S85Y 0.42 deleterious_low_confidence(0.01) benign(0.429) TCGA-AA-A010-01 6 89322311 89322311 A T RNGTT 3'UTR 0.50 TCGA-AA-A010-01 6 89814892 89814892 C T SRSF12 Missense_Mutation p.R121Q 0.37 deleterious(0.02) possibly_damaging(0.602) TCGA-AA-A010-01 6 89899928 89899928 C T GABRR1 Missense_Mutation p.R204Q 0.41 deleterious(0) possibly_damaging(0.883) TCGA-AA-A010-01 6 89967351 89967351 G A GABRR2 3'UTR 0.45 TCGA-AA-A010-01 6 89977401 89977401 T C GABRR2 Missense_Mutation p.T245A 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A010-01 6 90077634 90077634 G T RRAGD 3'UTR 0.67 TCGA-AA-A010-01 6 90097155 90097155 G A RRAGD Silent p.C101C 0.31 TCGA-AA-A010-01 6 90435078 90435078 T G MDN1 Missense_Mutation p.N1837T 0.28 probably_damaging(1) TCGA-AA-A010-01 6 90468570 90468570 G T MDN1 Missense_Mutation p.S857Y 0.34 benign(0.111) TCGA-AA-A010-01 6 90529269 90529269 T C MDN1 Missense_Mutation p.N20D 0.17 benign(0.079) TCGA-AA-A010-01 6 90573394 90573394 G A CASP8AP2 RNA 0.40 TCGA-AA-A010-01 6 90581066 90581066 T G CASP8AP2 RNA 0.37 TCGA-AA-A010-01 6 90605791 90605791 C T GJA10 Missense_Mutation p.S535L 0.33 tolerated_low_confidence(0.22) benign(0) TCGA-AA-A010-01 6 90660129 90660129 G T BACH2 Missense_Mutation p.L566M 0.40 tolerated(0.15) benign(0.073) TCGA-AA-A010-01 6 90660860 90660860 G A BACH2 Missense_Mutation p.A322V 0.28 tolerated(0.36) benign(0) TCGA-AA-A010-01 6 93979247 93979247 A C EPHA7 Missense_Mutation p.S527R 0.43 deleterious(0) benign(0.343) TCGA-AA-A010-01 6 94120352 94120352 T G EPHA7 Silent p.T233T 0.39 TCGA-AA-A010-01 6 96035236 96035236 A C MANEA Intron 0.44 TCGA-AA-A010-01 6 96653095 96653095 A G FUT9 3'UTR 0.51 TCGA-AA-A010-01 6 96653327 96653327 T G FUT9 3'UTR 0.42 TCGA-AA-A010-01 6 96654076 96654076 C A FUT9 3'UTR 0.34 TCGA-AA-A010-01 6 96655437 96655437 G T FUT9 3'UTR 0.32 TCGA-AA-A010-01 6 96656253 96656253 G A FUT9 3'UTR 0.34 TCGA-AA-A010-01 6 96656717 96656717 G T FUT9 3'UTR 0.40 TCGA-AA-A010-01 6 96659632 96659632 C A FUT9 3'UTR 0.38 TCGA-AA-A010-01 6 96661275 96661275 C A FUT9 3'UTR 0.15 TCGA-AA-A010-01 6 96662452 96662452 G T FUT9 3'UTR 0.43 TCGA-AA-A010-01 6 97414940 97414940 C T KLHL32 Missense_Mutation p.P2S 0.21 deleterious_low_confidence(0) benign(0.019) TCGA-AA-A010-01 6 97561879 97561879 A T KLHL32 Missense_Mutation p.K283I 0.36 tolerated(0.05) benign(0.1) TCGA-AA-A010-01 6 97676962 97676962 T G MMS22L Missense_Mutation p.Q616P 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A010-01 6 99284218 99284218 G T POU3F2 3'UTR 0.32 TCGA-AA-A010-01 6 99858756 99858756 G T PNISR Missense_Mutation p.P121H 0.38 deleterious(0) possibly_damaging(0.896) TCGA-AA-A010-01 7 100061683 100061683 G T C7orf61 5'UTR 0.35 TCGA-AA-A010-01 7 100198220 100198220 G A FBXO24 Missense_Mutation p.D519N 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.555) TCGA-AA-A010-01 7 100350723 100350723 G T ZAN Missense_Mutation p.A999S 0.38 unknown(0) TCGA-AA-A010-01 7 100457838 100457838 C A SLC12A9 Missense_Mutation p.S401Y 0.34 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 7 100468233 100468233 T C TRIP6 Silent p.D289D 0.45 TCGA-AA-A010-01 7 100491179 100491179 C T ACHE Silent p.P225P 0.38 TCGA-AA-A010-01 7 100682166 100682166 C A MUC17 Missense_Mutation p.S2490Y 0.34 probably_damaging(0.974) TCGA-AA-A010-01 7 100860540 100860540 G A PLOD3 Missense_Mutation p.P6S 0.41 tolerated_low_confidence(0.13) unknown(0) TCGA-AA-A010-01 7 101176401 101176401 C T COL26A1 Nonsense_Mutation p.R142* 0.38 TCGA-AA-A010-01 7 101944029 101944029 C T SH2B2 Silent p.F108F 0.40 TCGA-AA-A010-01 7 102006511 102006511 G T PRKRIP1 5'UTR 0.34 TCGA-AA-A010-01 7 102087404 102087404 C T ORAI2 Missense_Mutation p.R224C 0.39 deleterious(0.03) possibly_damaging(0.873) TCGA-AA-A010-01 7 102097653 102097653 G A ALKBH4 3'UTR 0.30 TCGA-AA-A010-01 7 102106651 102106651 C A LRWD1 Silent p.V122V 0.35 TCGA-AA-A010-01 7 102114107 102114107 C A POLR2J Nonsense_Mutation p.G115* 0.35 TCGA-AA-A010-01 7 102669146 102669146 T A FBXL13 Nonsense_Mutation p.K40* 0.39 TCGA-AA-A010-01 7 102743675 102743675 A C NAPEPLD 3'UTR 0.33 TCGA-AA-A010-01 7 103007905 103007905 G T PSMC2 Missense_Mutation p.R297I 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 7 103124112 103124112 T C RELN Missense_Mutation p.Y3390C 0.35 deleterious(0) possibly_damaging(0.88) TCGA-AA-A010-01 7 103138537 103138537 G T RELN Missense_Mutation p.L2944I 0.44 deleterious(0.02) probably_damaging(0.992) TCGA-AA-A010-01 7 103141235 103141235 G A RELN Missense_Mutation p.P2875L 0.35 tolerated(0.2) benign(0.004) TCGA-AA-A010-01 7 103292127 103292127 A G RELN Missense_Mutation p.S625P 0.29 tolerated(0.1) benign(0) TCGA-AA-A010-01 7 104717599 104717599 G A KMT2E Missense_Mutation p.D320N 0.39 tolerated(0.22) possibly_damaging(0.555) TCGA-AA-A010-01 7 104749414 104749414 G T KMT2E Missense_Mutation p.R1165I 0.21 deleterious_low_confidence(0) benign(0.308) TCGA-AA-A010-01 7 104752464 104752464 G A KMT2E Missense_Mutation p.V1421I 0.33 tolerated_low_confidence(0.15) benign(0) TCGA-AA-A010-01 7 105105799 105105799 G A PUS7 Missense_Mutation p.P530S 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 7 105279038 105279038 G A ATXN7L1 Missense_Mutation p.R322W 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 7 105401689 105401689 G A ATXN7L1 Intron 0.41 TCGA-AA-A010-01 7 105517005 105517005 C A ATXN7L1 5'UTR 0.34 TCGA-AA-A010-01 7 105903950 105903950 G A NAMPT Missense_Mutation p.A286V 0.34 deleterious(0.02) possibly_damaging(0.906) TCGA-AA-A010-01 7 1062662 1062662 G A C7orf50 Intron 0.25 TCGA-AA-A010-01 7 106509539 106509539 G T PIK3CG Missense_Mutation p.E511D 0.37 tolerated(0.52) benign(0.005) TCGA-AA-A010-01 7 106840703 106840703 A C HBP1 Missense_Mutation p.K495T 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 7 107262250 107262250 C T BCAP29 3'UTR 0.38 TCGA-AA-A010-01 7 107329521 107329521 C A SLC26A4 Missense_Mutation p.P342H 0.34 deleterious(0) benign(0.315) TCGA-AA-A010-01 7 107434302 107434302 T C SLC26A3 Silent p.R52R 0.35 TCGA-AA-A010-01 7 107434304 107434304 T C SLC26A3 Missense_Mutation p.R52G 0.35 tolerated(0.5) benign(0.003) TCGA-AA-A010-01 7 107703378 107703378 G A LAMB4 Silent p.C1041C 0.29 TCGA-AA-A010-01 7 107790372 107790372 T G NRCAM Missense_Mutation p.M1300L 0.43 deleterious(0.05) possibly_damaging(0.5) TCGA-AA-A010-01 7 107791197 107791197 G A NRCAM Intron 0.35 TCGA-AA-A010-01 7 107866733 107866733 C T NRCAM Missense_Mutation p.E214K 0.22 tolerated(0.09) benign(0.418) TCGA-AA-A010-01 7 108205018 108205018 C A THAP5 Nonsense_Mutation p.E269* 0.33 TCGA-AA-A010-01 7 108212276 108212276 T G DNAJB9 Missense_Mutation p.S36A 0.36 tolerated(0.1) benign(0.123) TCGA-AA-A010-01 7 108524047 108524047 T G C7orf66 3'UTR 0.33 TCGA-AA-A010-01 7 10978457 10978457 C T NDUFA4 Missense_Mutation p.A37T 0.40 deleterious(0.03) probably_damaging(0.923) TCGA-AA-A010-01 7 111400363 111400363 A C DOCK4 Missense_Mutation p.C1337G 0.34 deleterious(0.01) probably_damaging(0.942) TCGA-AA-A010-01 7 111449433 111449433 C T DOCK4 Missense_Mutation p.A1011T 0.32 tolerated(0.11) benign(0.036) TCGA-AA-A010-01 7 111449458 111449458 C A DOCK4 Splice_Site p.X1003_splice 0.31 TCGA-AA-A010-01 7 112115516 112115516 G A IFRD1 Missense_Mutation p.R433Q 0.42 deleterious(0) possibly_damaging(0.452) TCGA-AA-A010-01 7 112413051 112413051 G T TMEM168 Missense_Mutation p.S444Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 7 112424871 112424871 A C TMEM168 Missense_Mutation p.S4A 0.29 tolerated(0.23) probably_damaging(0.986) TCGA-AA-A010-01 7 1133206 1133206 T A GPER1 3'UTR 0.35 TCGA-AA-A010-01 7 113519669 113519669 G A PPP1R3A Missense_Mutation p.T493M 0.34 tolerated(0.21) benign(0.064) TCGA-AA-A010-01 7 114139000 114139000 G T FOXP2 Intron 0.42 TCGA-AA-A010-01 7 114271689 114271689 G A FOXP2 Missense_Mutation p.S260N 0.26 tolerated(0.9) unknown(0) TCGA-AA-A010-01 7 114271749 114271749 C T FOXP2 Missense_Mutation p.S280L 0.28 tolerated(0.06) unknown(0) TCGA-AA-A010-01 7 115889346 115889346 G A TES Intron 0.37 TCGA-AA-A010-01 7 115897654 115897654 G T TES 3'UTR 0.41 TCGA-AA-A010-01 7 116139983 116139983 A G CAV2 Missense_Mutation p.K50E 0.31 deleterious(0.03) benign(0.403) TCGA-AA-A010-01 7 11632924 11632924 C A THSD7A Nonsense_Mutation p.E410* 0.39 TCGA-AA-A010-01 7 116339746 116339746 C A MET Missense_Mutation p.S203Y 0.39 tolerated(0.22) possibly_damaging(0.776) TCGA-AA-A010-01 7 116397528 116397528 T C MET Missense_Mutation p.F634L 0.49 tolerated(0.35) benign(0.008) TCGA-AA-A010-01 7 117199585 117199585 G T CFTR Missense_Mutation p.R487I 0.43 deleterious(0) benign(0.06) TCGA-AA-A010-01 7 117267712 117267712 A G CFTR Missense_Mutation p.D1202G 0.24 tolerated(0.07) benign(0.002) TCGA-AA-A010-01 7 117407167 117407167 G A CTTNBP2 Missense_Mutation p.R948W 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 117432760 117432760 G A CTTNBP2 Missense_Mutation p.R164C 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 7 117825737 117825737 A G NAA38 Missense_Mutation p.R21G 0.36 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 7 117864772 117864772 C T ANKRD7 5'UTR 0.33 TCGA-AA-A010-01 7 117874888 117874888 A C ANKRD7 Missense_Mutation p.K143T 0.33 deleterious(0) possibly_damaging(0.727) TCGA-AA-A010-01 7 117876200 117876200 A C ANKRD7 Silent p.R192R 0.37 TCGA-AA-A010-01 7 120385947 120385947 C T KCND2 Silent p.S527S 0.38 TCGA-AA-A010-01 7 120614922 120614922 G T ING3 3'UTR 0.42 TCGA-AA-A010-01 7 120907276 120907276 T G CPED1 Missense_Mutation p.L881V 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 7 120979208 120979208 C A WNT16 Missense_Mutation p.P303T 0.45 tolerated(0.39) benign(0.055) TCGA-AA-A010-01 7 121652613 121652613 G T PTPRZ1 Missense_Mutation p.E1171D 0.26 tolerated_low_confidence(0.06) benign(0.036) TCGA-AA-A010-01 7 121653108 121653108 T G PTPRZ1 Missense_Mutation p.I1336M 0.34 deleterious_low_confidence(0.01) benign(0.11) TCGA-AA-A010-01 7 121653817 121653817 A C PTPRZ1 Missense_Mutation p.T1573P 0.33 deleterious(0.04) benign(0.04) TCGA-AA-A010-01 7 121653829 121653829 G T PTPRZ1 Missense_Mutation p.D1577Y 0.37 deleterious(0) possibly_damaging(0.548) TCGA-AA-A010-01 7 121659297 121659297 C A PTPRZ1 Missense_Mutation p.L1655I 0.39 deleterious(0.05) benign(0.303) TCGA-AA-A010-01 7 121717991 121717991 T G AASS Missense_Mutation p.T855P 0.38 tolerated(0.25) benign(0.393) TCGA-AA-A010-01 7 121721593 121721593 C T AASS Silent p.A747A 0.27 TCGA-AA-A010-01 7 121753674 121753674 C A AASS Missense_Mutation p.D382Y 0.38 deleterious(0.01) probably_damaging(0.936) TCGA-AA-A010-01 7 121960164 121960164 A T CADPS2 3'UTR 0.20 TCGA-AA-A010-01 7 122338676 122338676 C T RNF133 Silent p.E99E 0.36 TCGA-AA-A010-01 7 123101571 123101571 G T IQUB Nonsense_Mutation p.S616* 0.27 TCGA-AA-A010-01 7 123152343 123152343 C A IQUB Nonsense_Mutation p.E18* 0.35 TCGA-AA-A010-01 7 123344705 123344705 C A WASL Missense_Mutation p.R148I 0.50 deleterious(0.01) unknown(0) TCGA-AA-A010-01 7 123346796 123346796 C A WASL Missense_Mutation p.D113Y 0.34 deleterious(0.02) unknown(0) TCGA-AA-A010-01 7 12420175 12420175 C A VWDE Missense_Mutation p.E242D 0.44 tolerated(0.24) possibly_damaging(0.453) TCGA-AA-A010-01 7 124404409 124404409 C T GPR37 Missense_Mutation p.E208K 0.41 tolerated(0.07) benign(0.089) TCGA-AA-A010-01 7 126173186 126173186 A C GRM8 Missense_Mutation p.I750M 0.25 tolerated(0.23) probably_damaging(0.999) TCGA-AA-A010-01 7 126542657 126542657 C A GRM8 Missense_Mutation p.E365D 0.34 tolerated(0.78) possibly_damaging(0.63) TCGA-AA-A010-01 7 126883170 126883170 C A GRM8 Missense_Mutation p.R30I 0.38 tolerated(0.14) benign(0.004) TCGA-AA-A010-01 7 127011751 127011751 A C ZNF800 3'UTR 0.33 TCGA-AA-A010-01 7 127253917 127253917 A G PAX4 Missense_Mutation p.V144A 0.38 tolerated(0.92) benign(0.007) TCGA-AA-A010-01 7 12729403 12729403 C A ARL4A 3'UTR 0.37 TCGA-AA-A010-01 7 127344908 127344908 G T SND1 Nonsense_Mutation p.E286* 0.43 TCGA-AA-A010-01 7 127669904 127669904 C A LRRC4 Missense_Mutation p.G264W 0.39 deleterious(0) possibly_damaging(0.824) TCGA-AA-A010-01 7 127721937 127721937 C T SND1 Intron 0.39 TCGA-AA-A010-01 7 128098399 128098399 A G HILPDA 3'UTR 0.39 TCGA-AA-A010-01 7 128358935 128358935 G A FAM71F1 Missense_Mutation p.R162H 0.42 deleterious(0) probably_damaging(0.956) TCGA-AA-A010-01 7 128358963 128358963 G T FAM71F1 Missense_Mutation p.E171D 0.37 tolerated(0.08) probably_damaging(0.999) TCGA-AA-A010-01 7 128394667 128394667 G T CALU Missense_Mutation p.K110N 0.38 tolerated(0.12) possibly_damaging(0.811) TCGA-AA-A010-01 7 128415534 128415534 C T OPN1SW Missense_Mutation p.R104H 0.35 tolerated(0.45) benign(0.022) TCGA-AA-A010-01 7 128441526 128441526 C T CCDC136 Silent p.S211S 0.33 TCGA-AA-A010-01 7 128485100 128485100 C T FLNC Missense_Mutation p.S1194L 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-AA-A010-01 7 128488896 128488896 G A FLNC Missense_Mutation p.G1596D 0.32 deleterious(0.02) probably_damaging(1) TCGA-AA-A010-01 7 128489616 128489616 G T FLNC Missense_Mutation p.S1728I 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 7 128496660 128496660 C G FLNC Missense_Mutation p.P2447R 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 128520099 128520099 C T KCP RNA 0.42 TCGA-AA-A010-01 7 128587464 128587464 G A IRF5 Missense_Mutation p.G221D 0.35 tolerated(0.54) benign(0.246) TCGA-AA-A010-01 7 128767552 128767552 G A RP11-286H14.4 RNA 0.16 TCGA-AA-A010-01 7 128767685 128767685 G A RP11-286H14.4 RNA 0.37 TCGA-AA-A010-01 7 129019535 129019535 A G AHCYL2 Silent p.G140G 0.47 TCGA-AA-A010-01 7 129019566 129019566 T C AHCYL2 Missense_Mutation p.S151P 0.45 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-AA-A010-01 7 129028979 129028979 C A AHCYL2 Missense_Mutation p.F186L 0.41 deleterious(0.04) probably_damaging(0.956) TCGA-AA-A010-01 7 129297219 129297219 G A NRF1 Missense_Mutation p.E10K 0.43 deleterious_low_confidence(0.01) benign(0.086) TCGA-AA-A010-01 7 129663502 129663502 A G ZC3HC1 Missense_Mutation p.V361A 0.38 tolerated(0.19) benign(0.04) TCGA-AA-A010-01 7 129933080 129933080 A C CPA4 Missense_Mutation p.K20N 0.33 tolerated(0.6) benign(0.002) TCGA-AA-A010-01 7 129999461 129999461 C T CPA5 Missense_Mutation p.A122V 0.43 tolerated(0.58) benign(0.008) TCGA-AA-A010-01 7 130039918 130039918 T C CEP41 Missense_Mutation p.Y312C 0.37 tolerated(0.17) benign(0.001) TCGA-AA-A010-01 7 130417768 130417768 G T KLF14 3'UTR 0.43 TCGA-AA-A010-01 7 131831354 131831354 T C PLXNA4 Missense_Mutation p.N1657S 0.36 deleterious(0.03) probably_damaging(0.935) TCGA-AA-A010-01 7 131982879 131982879 C T PLXNA4 Missense_Mutation p.E492K 0.33 tolerated(0.51) benign(0.001) TCGA-AA-A010-01 7 132973729 132973729 G A EXOC4 Silent p.E110E 0.40 TCGA-AA-A010-01 7 133868569 133868569 G A LRGUK Missense_Mutation p.R433H 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 7 133906574 133906574 G T LRGUK Missense_Mutation p.K629N 0.36 tolerated(0.25) benign(0.01) TCGA-AA-A010-01 7 133979490 133979490 C T SLC35B4 3'UTR 0.40 TCGA-AA-A010-01 7 134130040 134130040 C A AKR1B1 Missense_Mutation p.M286I 0.21 tolerated(0.15) benign(0.164) TCGA-AA-A010-01 7 134260172 134260172 G A AKR1B15 Missense_Mutation p.A172T 0.38 deleterious(0) possibly_damaging(0.609) TCGA-AA-A010-01 7 134625935 134625935 G A CALD1 Silent p.S493S 0.37 TCGA-AA-A010-01 7 134761186 134761186 C T AGBL3 Missense_Mutation p.T649I 0.39 tolerated(0.16) benign(0.009) TCGA-AA-A010-01 7 134853583 134853583 G A C7orf49 Missense_Mutation p.A31V 0.32 deleterious(0.02) benign(0.058) TCGA-AA-A010-01 7 134878343 134878343 C T WDR91 Missense_Mutation p.D493N 0.37 tolerated(0.21) benign(0.139) TCGA-AA-A010-01 7 134916782 134916782 C A STRA8 Missense_Mutation p.L18M 0.36 tolerated_low_confidence(0.07) benign(0.001) TCGA-AA-A010-01 7 135258472 135258472 A G NUP205 Missense_Mutation p.Q81R 0.28 deleterious(0.04) probably_damaging(0.926) TCGA-AA-A010-01 7 135261155 135261155 G T NUP205 Nonsense_Mutation p.E161* 0.38 TCGA-AA-A010-01 7 135290953 135290953 G T NUP205 Nonsense_Mutation p.E962* 0.38 TCGA-AA-A010-01 7 135303259 135303259 G T NUP205 Nonsense_Mutation p.E1291* 0.24 TCGA-AA-A010-01 7 135390963 135390963 C T SLC13A4 Missense_Mutation p.V151M 0.31 deleterious(0.03) probably_damaging(0.979) TCGA-AA-A010-01 7 136700307 136700307 C T CHRM2 Missense_Mutation p.S232F 0.25 deleterious(0.02) benign(0.03) TCGA-AA-A010-01 7 136701577 136701577 C A CHRM2 3'UTR 0.30 TCGA-AA-A010-01 7 137567190 137567190 C A CREB3L2 Missense_Mutation p.E485D 0.36 tolerated(0.17) benign(0.003) TCGA-AA-A010-01 7 138434020 138434020 G A ATP6V0A4 Nonsense_Mutation p.Q358* 0.35 TCGA-AA-A010-01 7 138583724 138583724 C T KIAA1549 Missense_Mutation p.R1275Q 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 138603942 138603942 A G KIAA1549 Missense_Mutation p.S144P 0.42 deleterious(0.05) benign(0.037) TCGA-AA-A010-01 7 138711201 138711201 C T ZC3HAV1L 3'UTR 0.41 TCGA-AA-A010-01 7 139164973 139164973 A G KLRG2 Missense_Mutation p.S260P 0.33 deleterious(0) benign(0.13) TCGA-AA-A010-01 7 13935406 13935406 G T ETV1 3'UTR 0.27 TCGA-AA-A010-01 7 13971292 13971292 G A ETV1 Missense_Mutation p.R213C 0.36 tolerated(0.06) probably_damaging(0.967) TCGA-AA-A010-01 7 140154255 140154255 C G MKRN1 3'UTR 0.33 TCGA-AA-A010-01 7 140246731 140246731 A G DENND2A Silent p.D682D 0.39 TCGA-AA-A010-01 7 141408619 141408619 G A WEE2 Missense_Mutation p.E21K 0.31 deleterious(0) possibly_damaging(0.717) TCGA-AA-A010-01 7 141478735 141478735 G A TAS2R4 Silent p.T149T 0.24 TCGA-AA-A010-01 7 141539163 141539163 G T PRSS37 Missense_Mutation p.L51M 0.42 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 7 141618903 141618903 C T OR9A4 Silent p.I76I 0.36 TCGA-AA-A010-01 7 141629888 141629888 T C CLEC5A 3'UTR 0.30 TCGA-AA-A010-01 7 141643757 141643757 C A CLEC5A Missense_Mutation p.Q49H 0.32 tolerated(0.07) benign(0.023) TCGA-AA-A010-01 7 141747643 141747643 G T MGAM Nonsense_Mutation p.E853* 0.36 TCGA-AA-A010-01 7 141750572 141750572 C A MGAM Missense_Mutation p.L905I 0.36 deleterious(0.02) benign(0.05) TCGA-AA-A010-01 7 141750617 141750617 G C MGAM Missense_Mutation p.V920L 0.33 tolerated(0.29) benign(0.002) TCGA-AA-A010-01 7 141759363 141759363 G A MGAM Missense_Mutation p.R1304H 0.05 deleterious(0.01) benign(0.092) TCGA-AA-A010-01 7 14188830 14188830 G A DGKB Silent p.L781L 0.35 TCGA-AA-A010-01 7 142583225 142583225 G T TRPV6 Missense_Mutation p.L13I 0.38 tolerated_low_confidence(0.39) benign(0.003) TCGA-AA-A010-01 7 142605801 142605801 C A TRPV5 Missense_Mutation p.R690L 0.36 tolerated(0.15) possibly_damaging(0.895) TCGA-AA-A010-01 7 142611854 142611854 C T TRPV5 Missense_Mutation p.R492H 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A010-01 7 142636830 142636830 A G C7orf34 Missense_Mutation p.T63A 0.36 tolerated(0.26) benign(0.035) TCGA-AA-A010-01 7 142880621 142880621 T - TAS2R39 Frame_Shift_Del p.L38* 0.29 TCGA-AA-A010-01 7 142880877 142880877 T G TAS2R39 Missense_Mutation p.F122L 0.38 deleterious(0.03) benign(0.102) TCGA-AA-A010-01 7 142880883 142880883 C T TAS2R39 Silent p.S124S 0.34 TCGA-AA-A010-01 7 142989780 142989780 G A CASP2 Missense_Mutation p.R155H 0.28 tolerated(0.22) benign(0.014) TCGA-AA-A010-01 7 143054389 143054389 T G FAM131B Missense_Mutation p.E198D 0.36 tolerated(0.37) probably_damaging(0.995) TCGA-AA-A010-01 7 143417140 143417140 G A FAM115C Missense_Mutation p.D330N 0.22 tolerated(0.16) benign(0.01) TCGA-AA-A010-01 7 143418435 143418435 C A FAM115C Silent p.V559V 0.77 TCGA-AA-A010-01 7 143453658 143453658 G T CTAGE6 Missense_Mutation p.S365Y 0.24 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 7 143701446 143701446 C A OR6B1 Silent p.A119A 0.33 TCGA-AA-A010-01 7 143747690 143747690 G A OR2A5 Missense_Mutation p.A66T 0.30 deleterious(0) possibly_damaging(0.721) TCGA-AA-A010-01 7 143747700 143747700 A C OR2A5 Missense_Mutation p.D69A 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 14378224 14378224 G A DGKB Nonsense_Mutation p.R681* 0.38 TCGA-AA-A010-01 7 148106556 148106556 C A CNTNAP2 Silent p.I1263I 0.34 TCGA-AA-A010-01 7 148487509 148487509 C A CUL1 Nonsense_Mutation p.C594* 0.35 TCGA-AA-A010-01 7 148495098 148495098 C A CUL1 Missense_Mutation p.L673I 0.33 tolerated(0.24) benign(0.125) TCGA-AA-A010-01 7 148504774 148504774 C A EZH2 Missense_Mutation p.K740N 0.40 deleterious(0) probably_damaging(0.99) TCGA-AA-A010-01 7 148525950 148525950 T G EZH2 Missense_Mutation p.E169D 0.35 tolerated(0.31) possibly_damaging(0.478) TCGA-AA-A010-01 7 148700994 148700994 G A PDIA4 Silent p.D610D 0.36 TCGA-AA-A010-01 7 148801628 148801628 C T ZNF425 Silent p.P445P 0.45 TCGA-AA-A010-01 7 14880946 14880946 C T DGKB 5'UTR 0.40 TCGA-AA-A010-01 7 149474377 149474377 G A ZNF467 5'Flank 0.33 TCGA-AA-A010-01 7 149488607 149488607 C T SSPO RNA 0.43 TCGA-AA-A010-01 7 149503836 149503836 G T SSPO RNA 0.37 TCGA-AA-A010-01 7 149515185 149515189 GAGTA AAGT SSPO RNA 0.29 TCGA-AA-A010-01 7 149523003 149523003 C T SSPO RNA 0.36 TCGA-AA-A010-01 7 149547315 149547315 C T ZNF862 Silent p.F335F 0.39 TCGA-AA-A010-01 7 149575815 149575815 G T ATP6V0E2 Intron 0.37 TCGA-AA-A010-01 7 150034254 150034254 C T LRRC61 Missense_Mutation p.L102F 0.41 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 7 150217753 150217753 G T GIMAP7 Nonsense_Mutation p.E231* 0.33 TCGA-AA-A010-01 7 150324966 150324966 C A GIMAP6 Missense_Mutation p.Q240H 0.36 deleterious(0.03) benign(0.223) TCGA-AA-A010-01 7 150325095 150325095 G A GIMAP6 Silent p.C197C 0.36 TCGA-AA-A010-01 7 150325438 150325438 C A GIMAP6 Missense_Mutation p.S83I 0.40 tolerated(0.06) benign(0.223) TCGA-AA-A010-01 7 150417542 150417542 C A GIMAP1 Silent p.V150V 0.44 TCGA-AA-A010-01 7 150489175 150489175 C T TMEM176B Missense_Mutation p.R230Q 0.34 tolerated(0.17) benign(0.426) TCGA-AA-A010-01 7 150502086 150502086 G A TMEM176A 3'UTR 0.40 TCGA-AA-A010-01 7 150656982 150656982 C T KCNH2 Intron 0.33 TCGA-AA-A010-01 7 150692396 150692396 G A NOS3 Silent p.A88A 0.37 TCGA-AA-A010-01 7 150710350 150710350 C T NOS3 Silent p.F1046F 0.43 TCGA-AA-A010-01 7 150742341 150742341 G A ABCB8 Missense_Mutation p.E688K 0.48 tolerated(0.18) benign(0.091) TCGA-AA-A010-01 7 150746071 150746071 C T ASIC3 Silent p.F33F 0.37 TCGA-AA-A010-01 7 150748981 150748981 G A ASIC3 Silent p.E433E 0.33 TCGA-AA-A010-01 7 150878243 150878243 C T ASB10 Missense_Mutation p.R296Q 0.35 tolerated(0.08) benign(0.37) TCGA-AA-A010-01 7 150878497 150878497 G A ASB10 Silent p.S211S 0.40 TCGA-AA-A010-01 7 150939642 150939642 C T SMARCD3 Silent p.A168A 0.32 TCGA-AA-A010-01 7 151372617 151372617 G T PRKAG2 Silent p.I191I 0.33 TCGA-AA-A010-01 7 151478358 151478358 G A PRKAG2 Missense_Mutation p.R116C 0.41 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-AA-A010-01 7 1515591 1515591 A G INTS1 Missense_Mutation p.V1832A 0.25 tolerated(0.51) benign(0.004) TCGA-AA-A010-01 7 151664412 151664412 G T GALNTL5 Missense_Mutation p.L27F 0.37 tolerated(1) benign(0.001) TCGA-AA-A010-01 7 151664429 151664429 G A GALNTL5 Missense_Mutation p.S33N 0.38 tolerated(0.72) benign(0.001) TCGA-AA-A010-01 7 151716785 151716785 C T GALNTL5 Missense_Mutation p.R411C 0.33 deleterious(0) benign(0.163) TCGA-AA-A010-01 7 1517396 1517396 C T INTS1 Missense_Mutation p.G1603S 0.48 tolerated(0.79) benign(0.002) TCGA-AA-A010-01 7 151791514 151791514 G A GALNT11 Missense_Mutation p.E68K 0.42 tolerated(0.42) benign(0.001) TCGA-AA-A010-01 7 151846091 151846091 G A KMT2C Silent p.I4307I 0.55 TCGA-AA-A010-01 7 151927087 151927087 A C KMT2C Missense_Mutation p.F966C 0.08 probably_damaging(1) TCGA-AA-A010-01 7 15427042 15427042 C A AGMO Nonsense_Mutation p.E316* 0.40 TCGA-AA-A010-01 7 15458214 15458214 T G AGMO Missense_Mutation p.N193T 0.38 deleterious(0) probably_damaging(0.982) TCGA-AA-A010-01 7 154679436 154679436 G A DPP6 Missense_Mutation p.A766T 0.33 tolerated(0.22) possibly_damaging(0.874) TCGA-AA-A010-01 7 155534569 155534569 G A RBM33 Silent p.A702A 0.39 TCGA-AA-A010-01 7 155592765 155592765 G T SHH 3'UTR 0.34 TCGA-AA-A010-01 7 156518215 156518215 G T LMBR1 Missense_Mutation p.L358I 0.40 tolerated(0.05) possibly_damaging(0.755) TCGA-AA-A010-01 7 15652183 15652183 T C MEOX2 Silent p.G248G 0.35 TCGA-AA-A010-01 7 156803037 156803037 T G MNX1 Missense_Mutation p.K3T 0.33 deleterious(0) unknown(0) TCGA-AA-A010-01 7 157000525 157000525 C T UBE3C Nonsense_Mutation p.R569* 0.45 TCGA-AA-A010-01 7 157023919 157023919 G T UBE3C Missense_Mutation p.K793N 0.35 deleterious(0.01) possibly_damaging(0.493) TCGA-AA-A010-01 7 157449123 157449123 G A PTPRN2 Missense_Mutation p.R708C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 157959977 157959977 C A PTPRN2 Missense_Mutation p.D186Y 0.37 deleterious(0) possibly_damaging(0.556) TCGA-AA-A010-01 7 158468256 158468256 C T NCAPG2 Silent p.P413P 0.43 TCGA-AA-A010-01 7 1588179 1588179 C T TMEM184A Missense_Mutation p.V264I 0.31 tolerated(0.2) benign(0.16) TCGA-AA-A010-01 7 16317777 16317777 C A ISPD Nonsense_Mutation p.E304* 0.20 TCGA-AA-A010-01 7 16649317 16649317 A C ANKMY2 Missense_Mutation p.F274V 0.38 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 7 16685241 16685241 T G ANKMY2 5'UTR 0.38 TCGA-AA-A010-01 7 17349713 17349713 C T AHR Silent p.S73S 0.29 TCGA-AA-A010-01 7 17378954 17378954 C T AHR Missense_Mutation p.P502L 0.40 deleterious(0.03) benign(0.106) TCGA-AA-A010-01 7 1785737 1785737 C T ELFN1 Missense_Mutation p.A502V 0.47 tolerated(0.08) benign(0.007) TCGA-AA-A010-01 7 17890018 17890018 G A SNX13 Silent p.F339F 0.26 TCGA-AA-A010-01 7 17915106 17915106 C A SNX13 Nonsense_Mutation p.E221* 0.40 TCGA-AA-A010-01 7 17922530 17922530 C T SNX13 Intron 0.71 TCGA-AA-A010-01 7 18066476 18066476 G T PRPS1L1 Silent p.S310S 0.40 TCGA-AA-A010-01 7 18625100 18625100 G T HDAC9 Missense_Mutation p.E73D 0.37 tolerated(0.1) probably_damaging(0.995) TCGA-AA-A010-01 7 18669056 18669056 G T HDAC9 Missense_Mutation p.D250Y 0.52 deleterious(0) probably_damaging(0.957) TCGA-AA-A010-01 7 18801849 18801849 T C HDAC9 Missense_Mutation p.Y705H 0.44 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 7 19184935 19184935 G A FERD3L Silent p.V17V 0.23 TCGA-AA-A010-01 7 19761719 19761719 C A TMEM196 Silent p.L166L 0.33 TCGA-AA-A010-01 7 20197913 20197913 C T MACC1 Missense_Mutation p.E691K 0.31 deleterious(0) possibly_damaging(0.713) TCGA-AA-A010-01 7 20198610 20198610 C A MACC1 Missense_Mutation p.K458N 0.33 tolerated(0.49) benign(0.004) TCGA-AA-A010-01 7 20687670 20687670 C A ABCB5 Missense_Mutation p.S392Y 0.30 tolerated(0.34) benign(0.051) TCGA-AA-A010-01 7 20744421 20744421 A C ABCB5 Missense_Mutation p.Q804H 0.30 deleterious(0.02) benign(0.115) TCGA-AA-A010-01 7 20825237 20825237 A G SP8 Missense_Mutation p.S67P 0.36 tolerated(0.24) possibly_damaging(0.504) TCGA-AA-A010-01 7 21550841 21550841 C T SP4 Missense_Mutation p.S770L 0.36 deleterious(0) possibly_damaging(0.461) TCGA-AA-A010-01 7 21611526 21611526 G T DNAH11 Nonsense_Mutation p.E510* 0.30 TCGA-AA-A010-01 7 21640504 21640504 G T DNAH11 Nonsense_Mutation p.E1071* 0.32 TCGA-AA-A010-01 7 21641023 21641023 G T DNAH11 Missense_Mutation p.E1145D 0.56 benign(0.045) TCGA-AA-A010-01 7 21904253 21904253 C T DNAH11 Missense_Mutation p.S3832F 0.18 benign(0.213) TCGA-AA-A010-01 7 21912967 21912967 G T DNAH11 Missense_Mutation p.D4022Y 0.53 probably_damaging(0.956) TCGA-AA-A010-01 7 21940794 21940794 C A DNAH11 Silent p.I4498I 0.38 TCGA-AA-A010-01 7 21947891 21947891 G T CDCA7L Missense_Mutation p.L180I 0.33 tolerated(0.13) benign(0.014) TCGA-AA-A010-01 7 22532198 22532198 A C STEAP1B Missense_Mutation p.F250V 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 7 22533035 22533035 A C STEAP1B Missense_Mutation p.L169V 0.39 deleterious(0.03) benign(0.338) TCGA-AA-A010-01 7 22852566 22852566 T G TOMM7 3'UTR 0.29 TCGA-AA-A010-01 7 23023638 23023638 A C FAM126A Missense_Mutation p.N26K 0.46 deleterious(0.03) benign(0.004) TCGA-AA-A010-01 7 23214045 23214045 C A KLHL7 3'UTR 0.35 TCGA-AA-A010-01 7 23240239 23240239 G T NUPL2 Missense_Mutation p.D383Y 0.41 deleterious(0.01) probably_damaging(0.974) TCGA-AA-A010-01 7 23306206 23306206 C T GPNMB Silent p.G375G 0.39 TCGA-AA-A010-01 7 23340611 23340611 C T MALSU1 Missense_Mutation p.A137V 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 7 23387318 23387318 G T IGF2BP3 Missense_Mutation p.A240D 0.39 deleterious(0.01) possibly_damaging(0.457) TCGA-AA-A010-01 7 23682709 23682709 C T CCDC126 Missense_Mutation p.T133M 0.32 deleterious_low_confidence(0.04) benign(0.036) TCGA-AA-A010-01 7 24689344 24689344 T G MPP6 Missense_Mutation p.I128M 0.28 deleterious(0) possibly_damaging(0.491) TCGA-AA-A010-01 7 24784285 24784285 C T DFNA5 Silent p.K100K 0.36 TCGA-AA-A010-01 7 24882013 24882013 T C OSBPL3 Missense_Mutation p.N429S 0.57 tolerated(0.92) benign(0) TCGA-AA-A010-01 7 25264618 25264618 G T NPVF 3'UTR 0.45 TCGA-AA-A010-01 7 2552803 2552803 C A LFNG Silent p.I20I 0.34 TCGA-AA-A010-01 7 26225093 26225093 C T NFE2L3 Missense_Mutation p.A592V 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A010-01 7 26237050 26237050 C A HNRNPA2B1 Missense_Mutation p.R62I 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 7 2638105 2638105 G T IQCE Nonsense_Mutation p.E483* 0.40 TCGA-AA-A010-01 7 2691859 2691859 G A TTYH3 Missense_Mutation p.A304T 0.39 tolerated(0.38) benign(0.001) TCGA-AA-A010-01 7 2701307 2701307 C A TTYH3 Silent p.T502T 0.33 TCGA-AA-A010-01 7 27141798 27141798 C T HOXA2 Missense_Mutation p.A108T 0.38 tolerated(0.57) benign(0.002) TCGA-AA-A010-01 7 27185431 27185431 C T HOXA6 Missense_Mutation p.R183H 0.37 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 7 27186888 27186888 C A HOXA6 Intron 0.38 TCGA-AA-A010-01 7 27282523 27282523 C T EVX1 5'UTR 0.42 TCGA-AA-A010-01 7 2771130 2771130 G A GNA12 Silent p.F277F 0.34 TCGA-AA-A010-01 7 27805543 27805543 A G TAX1BP1 Missense_Mutation p.Q119R 0.37 deleterious(0) benign(0.222) TCGA-AA-A010-01 7 29132291 29132291 C A CPVL Missense_Mutation p.D164Y 0.26 deleterious(0.01) possibly_damaging(0.646) TCGA-AA-A010-01 7 30185905 30185905 C A MTURN Missense_Mutation p.S92Y 0.34 deleterious_low_confidence(0) benign(0.176) TCGA-AA-A010-01 7 30656770 30656770 G A GARS Missense_Mutation p.R412H 0.35 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 7 30692955 30692955 G T CRHR2 3'UTR 0.30 TCGA-AA-A010-01 7 30818126 30818126 C T FAM188B Nonsense_Mutation p.R48* 0.34 TCGA-AA-A010-01 7 31104485 31104485 G T ADCYAP1R1 Missense_Mutation p.E30D 0.32 deleterious(0.03) benign(0.013) TCGA-AA-A010-01 7 31594471 31594471 G A CCDC129 Splice_Site p.X97_splice 0.43 TCGA-AA-A010-01 7 31792828 31792828 A G PDE1C 3'UTR 0.64 TCGA-AA-A010-01 7 31917591 31917591 C A PDE1C Missense_Mutation p.A222S 0.38 tolerated(0.11) benign(0.179) TCGA-AA-A010-01 7 32529906 32529906 C A LSM5 Intron 0.41 TCGA-AA-A010-01 7 33020056 33020056 A G FKBP9 Missense_Mutation p.I262V 0.43 tolerated(1) benign(0.001) TCGA-AA-A010-01 7 33035903 33035903 G T FKBP9 Missense_Mutation p.D390Y 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 34867042 34867042 G A NPSR1 Missense_Mutation p.A170T 0.41 deleterious(0) probably_damaging(0.942) TCGA-AA-A010-01 7 34997603 34997603 A C DPY19L1 Missense_Mutation p.I318S 0.33 tolerated(0.73) benign(0.007) TCGA-AA-A010-01 7 35733798 35733798 T G HERPUD2 Missense_Mutation p.K48T 0.40 deleterious(0) possibly_damaging(0.772) TCGA-AA-A010-01 7 37262259 37262259 A C ELMO1 Missense_Mutation p.I247M 0.31 deleterious(0.01) probably_damaging(0.952) TCGA-AA-A010-01 7 37354457 37354457 T A ELMO1 Missense_Mutation p.E63D 0.26 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 7 37901671 37901671 G A NME8 Silent p.P104P 0.30 TCGA-AA-A010-01 7 37936668 37936668 C T NME8 Missense_Mutation p.L581F 0.41 tolerated(0.1) benign(0.16) TCGA-AA-A010-01 7 37936708 37936708 A G NME8 Intron 0.47 TCGA-AA-A010-01 7 37949242 37949242 C A SFRP4 Missense_Mutation p.D278Y 0.36 deleterious(0) probably_damaging(0.923) TCGA-AA-A010-01 7 38254661 38254661 A G STARD3NL Missense_Mutation p.I112M 0.43 deleterious(0.03) benign(0.366) TCGA-AA-A010-01 7 38514995 38514995 C T AMPH Missense_Mutation p.A176T 0.56 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 7 38810821 38810821 T A VPS41 Missense_Mutation p.N388Y 0.32 deleterious(0.01) benign(0.109) TCGA-AA-A010-01 7 40488938 40488938 A T SUGCT Missense_Mutation p.Q297L 0.38 tolerated(1) benign(0.06) TCGA-AA-A010-01 7 41729612 41729612 C T INHBA Missense_Mutation p.R306H 0.21 deleterious(0.01) possibly_damaging(0.902) TCGA-AA-A010-01 7 41729739 41729739 C A INHBA Nonsense_Mutation p.E264* 0.35 TCGA-AA-A010-01 7 42005464 42005464 G T GLI3 Silent p.I1069I 0.42 TCGA-AA-A010-01 7 42949301 42949301 A C C7orf25 Missense_Mutation p.L458R 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 43484009 43484009 C A HECW1 Missense_Mutation p.S413Y 0.43 deleterious_low_confidence(0.03) benign(0.139) TCGA-AA-A010-01 7 43484745 43484745 C T HECW1 Silent p.S658S 0.38 TCGA-AA-A010-01 7 43547676 43547676 C T HECW1 Missense_Mutation p.S1271L 0.35 deleterious(0) probably_damaging(0.914) TCGA-AA-A010-01 7 43827621 43827621 C T BLVRA Missense_Mutation p.S44L 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 44079282 44079282 G T LINC00957 RNA 0.45 TCGA-AA-A010-01 7 44080816 44080816 A G DBNL 5'Flank 0.38 TCGA-AA-A010-01 7 44148924 44148924 G A AEBP1 Silent p.T378T 0.41 TCGA-AA-A010-01 7 44151908 44151908 G A AEBP1 Silent p.S735S 0.34 TCGA-AA-A010-01 7 44198815 44198815 G A GCK 5'UTR 0.45 TCGA-AA-A010-01 7 44228581 44228581 G T GCK 5'UTR 0.43 TCGA-AA-A010-01 7 44259883 44259883 C A CAMK2B Missense_Mutation p.K593N 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.728) TCGA-AA-A010-01 7 44268964 44268964 G A CAMK2B Intron 0.23 TCGA-AA-A010-01 7 44282881 44282881 G A CAMK2B Missense_Mutation p.A190V 0.35 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-AA-A010-01 7 44578706 44578706 C A NPC1L1 Missense_Mutation p.K430N 0.42 tolerated(0.1) benign(0.052) TCGA-AA-A010-01 7 45002413 45002413 C T MYO1G Silent p.E994E 0.29 TCGA-AA-A010-01 7 45014805 45014805 C T MYO1G Missense_Mutation p.V196M 0.39 tolerated(0.12) probably_damaging(0.953) TCGA-AA-A010-01 7 45015214 45015214 G T MYO1G Missense_Mutation p.L145M 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 7 45120477 45120477 C A NACAD Nonsense_Mutation p.E1517* 0.41 TCGA-AA-A010-01 7 45222997 45222997 G A RAMP3 Missense_Mutation p.D145N 0.39 deleterious(0) probably_damaging(0.945) TCGA-AA-A010-01 7 45930294 45930294 T C IGFBP1 Missense_Mutation p.V166A 0.41 tolerated(0.43) benign(0.005) TCGA-AA-A010-01 7 45931541 45931541 G A IGFBP1 Missense_Mutation p.R177Q 0.30 tolerated(1) benign(0.024) TCGA-AA-A010-01 7 4722402 4722402 G T FOXK1 Nonsense_Mutation p.E155* 0.48 TCGA-AA-A010-01 7 47344434 47344434 C A TNS3 Nonsense_Mutation p.E940* 0.33 TCGA-AA-A010-01 7 47407961 47407961 C T TNS3 Splice_Site p.X761_splice 0.33 TCGA-AA-A010-01 7 47897218 47897218 G A PKD1L1 Silent p.S1525S 0.30 TCGA-AA-A010-01 7 47930362 47930362 C A PKD1L1 Splice_Site p.X818_splice 0.38 TCGA-AA-A010-01 7 47955158 47955158 A G PKD1L1 Missense_Mutation p.S367P 0.23 tolerated(0.37) benign(0.024) TCGA-AA-A010-01 7 4799185 4799185 C T FOXK1 Missense_Mutation p.A552V 0.48 tolerated(0.37) benign(0.025) TCGA-AA-A010-01 7 48007496 48007496 T G HUS1 Missense_Mutation p.N223H 0.35 tolerated(0.13) benign(0.008) TCGA-AA-A010-01 7 4801921 4801921 C T FOXK1 Silent p.V676V 0.28 TCGA-AA-A010-01 7 48035667 48035667 A G SUN3 Silent p.G218G 0.35 TCGA-AA-A010-01 7 48046872 48046872 C T SUN3 Missense_Mutation p.E128K 0.37 tolerated(0.16) benign(0.414) TCGA-AA-A010-01 7 48068564 48068564 T C SUN3 5'UTR 0.33 TCGA-AA-A010-01 7 48285122 48285122 C T ABCA13 Silent p.C468C 0.37 TCGA-AA-A010-01 7 48311708 48311708 A C ABCA13 Missense_Mutation p.E815D 0.30 benign(0.022) TCGA-AA-A010-01 7 48318817 48318817 G T ABCA13 Nonsense_Mutation p.E2676* 0.38 TCGA-AA-A010-01 7 48450174 48450174 G A ABCA13 Missense_Mutation p.R4043H 0.38 benign(0.005) TCGA-AA-A010-01 7 50057846 50057846 C A ZPBP Missense_Mutation p.R258I 0.67 deleterious(0) probably_damaging(0.966) TCGA-AA-A010-01 7 50135830 50135830 G T C7orf72 Missense_Mutation p.R50I 0.38 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 7 50136108 50136108 C T C7orf72 Missense_Mutation p.P143S 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A010-01 7 50514875 50514875 C A FIGNL1 Missense_Mutation p.Q37H 0.30 tolerated(0.5) benign(0.006) TCGA-AA-A010-01 7 50771519 50771519 C T GRB10 Silent p.Q46Q 0.38 TCGA-AA-A010-01 7 5105227 5105227 C A RBAK Missense_Mutation p.L714I 0.42 deleterious_low_confidence(0.01) benign(0.129) TCGA-AA-A010-01 7 5112557 5112557 C T RBAK-RBAKDN 3'UTR 0.29 TCGA-AA-A010-01 7 5360029 5360029 C T TNRC18 Missense_Mutation p.R2222H 0.36 possibly_damaging(0.522) TCGA-AA-A010-01 7 540837 540837 C A PDGFA Nonsense_Mutation p.E166* 0.31 TCGA-AA-A010-01 7 54621596 54621596 G T VSTM2A Intron 0.35 TCGA-AA-A010-01 7 54636989 54636989 T C VSTM2A 3'UTR 0.36 TCGA-AA-A010-01 7 55260524 55260524 C A EGFR Silent p.V897V 0.42 TCGA-AA-A010-01 7 56123444 56123444 C A CCT6A Missense_Mutation p.S155Y 0.45 deleterious(0) probably_damaging(0.923) TCGA-AA-A010-01 7 56147701 56147701 T G SUMF2 3'UTR 0.30 TCGA-AA-A010-01 7 56149682 56149682 G A PHKG1 Silent p.H264H 0.40 TCGA-AA-A010-01 7 57187988 57187988 C T ZNF479 Silent p.E378E 0.47 TCGA-AA-A010-01 7 57188151 57188151 G T ZNF479 Missense_Mutation p.P324H 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 57188256 57188256 C A ZNF479 Missense_Mutation p.R289I 0.66 tolerated(0.69) probably_damaging(0.996) TCGA-AA-A010-01 7 57528611 57528611 T C ZNF716 Silent p.C148C 0.27 TCGA-AA-A010-01 7 5781017 5781017 T G RNF216 Missense_Mutation p.N211H 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.9) TCGA-AA-A010-01 7 5925933 5925933 C T OCM 3'UTR 0.33 TCGA-AA-A010-01 7 6017318 6017318 G A PMS2 Silent p.D782D 0.40 TCGA-AA-A010-01 7 6035167 6035167 T G PMS2 Missense_Mutation p.K301Q 0.40 tolerated(0.06) benign(0.287) TCGA-AA-A010-01 7 6077125 6077125 T G EIF2AK1 Missense_Mutation p.K421T 0.40 deleterious(0.01) possibly_damaging(0.734) TCGA-AA-A010-01 7 6175546 6175546 G A USP42 Missense_Mutation p.V173I 0.35 deleterious(0.03) probably_damaging(0.948) TCGA-AA-A010-01 7 62752120 62752120 G T ZNF733P RNA 0.22 TCGA-AA-A010-01 7 63537922 63537922 A C ZNF727 Missense_Mutation p.K165N 0.36 tolerated(0.42) benign(0.001) TCGA-AA-A010-01 7 63538121 63538121 G T ZNF727 Nonsense_Mutation p.E232* 0.43 TCGA-AA-A010-01 7 63538170 63538170 G T ZNF727 Missense_Mutation p.R248I 0.32 tolerated(0.84) probably_damaging(0.991) TCGA-AA-A010-01 7 6369371 6369371 C A FAM220A 3'UTR 0.38 TCGA-AA-A010-01 7 6369576 6369576 G A FAM220A 3'UTR 0.36 TCGA-AA-A010-01 7 6369969 6369969 C A FAM220A 3'UTR 0.47 TCGA-AA-A010-01 7 63774437 63774437 C A ZNF736 5'UTR 0.34 TCGA-AA-A010-01 7 63809461 63809461 G A ZNF736 Missense_Mutation p.S407N 0.25 tolerated(1) benign(0.001) TCGA-AA-A010-01 7 63982091 63982091 C A ZNF680 Missense_Mutation p.E347D 0.44 deleterious(0.02) probably_damaging(0.971) TCGA-AA-A010-01 7 63986808 63986808 C A ZNF680 Intron 0.21 TCGA-AA-A010-01 7 64167053 64167053 G T ZNF107 Missense_Mutation p.R124I 0.39 tolerated(0.06) benign(0.026) TCGA-AA-A010-01 7 64292353 64292353 C T ZNF138 Missense_Mutation p.R219C 0.33 deleterious(0.01) possibly_damaging(0.86) TCGA-AA-A010-01 7 64439563 64439563 C A ZNF117 Missense_Mutation p.R129I 0.27 tolerated(0.21) benign(0.081) TCGA-AA-A010-01 7 64646832 64646832 C A INTS4L1 Intron 0.76 TCGA-AA-A010-01 7 6509365 6509365 G T KDELR2 Silent p.S71S 0.44 TCGA-AA-A010-01 7 65154292 65154292 C T INTS4L2 RNA 0.37 TCGA-AA-A010-01 7 65842355 65842355 G A LINC00174 RNA 0.44 TCGA-AA-A010-01 7 66304558 66304558 C A GTF2IRD1P1 RNA 0.37 TCGA-AA-A010-01 7 6777263 6777263 G T PMS2CL RNA 0.39 TCGA-AA-A010-01 7 6821026 6821026 T G RSPH10B2 Missense_Mutation p.I559M 0.40 deleterious(0) probably_damaging(0.947) TCGA-AA-A010-01 7 6821074 6821074 G A RSPH10B2 Silent p.T575T 0.35 TCGA-AA-A010-01 7 69064575 69064575 T G AUTS2 5'UTR 0.45 TCGA-AA-A010-01 7 70228049 70228049 G A AUTS2 Silent p.E312E 0.29 TCGA-AA-A010-01 7 71142199 71142199 C T WBSCR17 Missense_Mutation p.R470C 0.32 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 7 71275406 71275406 C T CALN1 Silent p.T191T 0.35 TCGA-AA-A010-01 7 71488645 71488645 C A CALN1 Missense_Mutation p.W166C 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-AA-A010-01 7 72093975 72093975 C T TYW1B Missense_Mutation p.R131Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 7 72420552 72420552 T G POM121 3'UTR 0.12 TCGA-AA-A010-01 7 72658523 72658523 G T GTF2IRD2P1 RNA 0.34 TCGA-AA-A010-01 7 72744176 72744176 C T FKBP6 Silent p.L97L 0.42 TCGA-AA-A010-01 7 73097172 73097172 C A DNAJC30 Missense_Mutation p.E194D 0.41 deleterious(0.04) possibly_damaging(0.516) TCGA-AA-A010-01 7 73462885 73462885 C T ELN Silent p.F266F 0.44 TCGA-AA-A010-01 7 74211130 74211130 C A GTF2IRD2 Missense_Mutation p.K907N 0.44 deleterious(0.02) possibly_damaging(0.632) TCGA-AA-A010-01 7 74211205 74211205 G A GTF2IRD2 Silent p.Y882Y 0.37 TCGA-AA-A010-01 7 75174454 75174454 C A HIP1 Missense_Mutation p.K864N 0.45 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 7 75611357 75611357 C T POR Intron 0.50 TCGA-AA-A010-01 7 7571241 7571241 G T COL28A1 Missense_Mutation p.A140D 0.38 deleterious(0.01) possibly_damaging(0.861) TCGA-AA-A010-01 7 75915085 75915085 C T SRRM3 3'UTR 0.44 TCGA-AA-A010-01 7 76054540 76054540 G T ZP3 Nonsense_Mutation p.E87* 0.32 TCGA-AA-A010-01 7 76099728 76099728 G T DTX2 5'UTR 0.35 TCGA-AA-A010-01 7 7635908 7635908 C A MIOS Missense_Mutation p.F739L 0.33 deleterious(0.01) probably_damaging(0.925) TCGA-AA-A010-01 7 76885748 76885748 T G CCDC146 Missense_Mutation p.D202E 0.39 tolerated(0.19) possibly_damaging(0.54) TCGA-AA-A010-01 7 76885808 76885808 A G CCDC146 Silent p.G222G 0.36 TCGA-AA-A010-01 7 76991952 76991952 C T GSAP Silent p.P299P 0.37 TCGA-AA-A010-01 7 77212926 77212926 G T PTPN12 Missense_Mutation p.V114L 0.40 tolerated(0.28) benign(0.136) TCGA-AA-A010-01 7 80088004 80088004 C A GNAT3 Missense_Mutation p.D350Y 0.29 tolerated(0.07) probably_damaging(0.996) TCGA-AA-A010-01 7 81335667 81335667 G A HGF Missense_Mutation p.L565F 0.48 deleterious(0.04) benign(0.025) TCGA-AA-A010-01 7 81339547 81339547 G T HGF Missense_Mutation p.S486Y 0.32 deleterious(0.02) benign(0.372) TCGA-AA-A010-01 7 81346553 81346553 G T HGF Missense_Mutation p.S467Y 0.45 deleterious(0.01) possibly_damaging(0.551) TCGA-AA-A010-01 7 81386590 81386590 C A HGF Nonsense_Mutation p.G133* 0.24 TCGA-AA-A010-01 7 8153571 8153571 G A ICA1 Silent p.H478H 0.40 TCGA-AA-A010-01 7 81591263 81591263 G A CACNA2D1 Silent p.F971F 0.50 TCGA-AA-A010-01 7 82072724 82072724 G A CACNA2D1 Missense_Mutation p.L18F 0.29 tolerated(0.7) benign(0.429) TCGA-AA-A010-01 7 82579563 82579563 C A PCLO Silent p.T3447T 0.42 TCGA-AA-A010-01 7 82582326 82582326 A C PCLO Missense_Mutation p.F2648C 0.44 unknown(0) TCGA-AA-A010-01 7 82584410 82584410 C A PCLO Missense_Mutation p.E1953D 0.21 unknown(0) TCGA-AA-A010-01 7 82586203 82586203 T C PCLO Missense_Mutation p.S1356G 0.24 unknown(0) TCGA-AA-A010-01 7 82785197 82785197 T G PCLO Missense_Mutation p.T254P 0.36 unknown(0) TCGA-AA-A010-01 7 83098574 83098574 C A SEMA3E Missense_Mutation p.M107I 0.36 tolerated(0.25) benign(0.023) TCGA-AA-A010-01 7 83640381 83640381 C A SEMA3A Missense_Mutation p.D318Y 0.40 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 7 83764139 83764139 C T SEMA3A Missense_Mutation p.D81N 0.25 tolerated(0.58) benign(0.003) TCGA-AA-A010-01 7 84727171 84727171 C A SEMA3D Missense_Mutation p.D88Y 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 86539281 86539281 C A KIAA1324L Missense_Mutation p.D736Y 0.37 deleterious(0.04) probably_damaging(0.976) TCGA-AA-A010-01 7 86542491 86542491 C A KIAA1324L Missense_Mutation p.K587N 0.26 deleterious(0) probably_damaging(0.978) TCGA-AA-A010-01 7 86827312 86827312 A G TMEM243 Missense_Mutation p.L60S 0.42 deleterious(0.05) benign(0.134) TCGA-AA-A010-01 7 86988738 86988738 T A CROT Intron 0.31 TCGA-AA-A010-01 7 87031524 87031524 A G ABCB4 Missense_Mutation p.V1250A 0.31 tolerated(1) benign(0.005) TCGA-AA-A010-01 7 87180062 87180062 T G ABCB1 Missense_Mutation p.E364D 0.45 tolerated(0.51) benign(0.003) TCGA-AA-A010-01 7 87479241 87479241 C T SLC25A40 Missense_Mutation p.R96Q 0.36 tolerated(0.16) benign(0.328) TCGA-AA-A010-01 7 8790753 8790753 G A NXPH1 Missense_Mutation p.R57Q 0.31 tolerated(0.17) probably_damaging(0.941) TCGA-AA-A010-01 7 8791145 8791145 G T NXPH1 Missense_Mutation p.D188Y 0.37 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 7 88423546 88423546 T C C7orf62 Missense_Mutation p.I237M 0.41 tolerated(0.11) benign(0.192) TCGA-AA-A010-01 7 88962859 88962859 G T ZNF804B Missense_Mutation p.R188L 0.29 deleterious(0) possibly_damaging(0.838) TCGA-AA-A010-01 7 88963142 88963142 T G ZNF804B Missense_Mutation p.N282K 0.41 tolerated(0.27) benign(0.211) TCGA-AA-A010-01 7 88966318 88966318 C T ZNF804B Missense_Mutation p.A1341V 0.29 tolerated(0.85) benign(0.098) TCGA-AA-A010-01 7 89793876 89793876 T G STEAP1 Missense_Mutation p.F283C 0.29 deleterious(0) possibly_damaging(0.671) TCGA-AA-A010-01 7 89884764 89884764 C T C7orf63 Missense_Mutation p.R50C 0.34 deleterious(0.05) benign(0.002) TCGA-AA-A010-01 7 89900843 89900843 A G C7orf63 Missense_Mutation p.Y179C 0.47 deleterious(0.01) probably_damaging(0.969) TCGA-AA-A010-01 7 90042546 90042546 T C CLDN12 Missense_Mutation p.F186L 0.40 tolerated(0.75) benign(0.003) TCGA-AA-A010-01 7 90042788 90042788 G A CLDN12 3'UTR 0.34 TCGA-AA-A010-01 7 90895665 90895665 C T FZD1 Silent p.F490F 0.39 TCGA-AA-A010-01 7 91503023 91503023 C T MTERF Missense_Mutation p.R362Q 0.38 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 7 91631427 91631427 A G AKAP9 Silent p.R732R 0.56 TCGA-AA-A010-01 7 91668064 91668064 A C AKAP9 Missense_Mutation p.K1557T 0.50 benign(0.208) TCGA-AA-A010-01 7 91674410 91674410 C T AKAP9 Missense_Mutation p.R1751C 0.37 possibly_damaging(0.49) TCGA-AA-A010-01 7 91711866 91711866 G T AKAP9 Nonsense_Mutation p.E2684* 0.33 TCGA-AA-A010-01 7 91715619 91715619 C A AKAP9 Missense_Mutation p.F3034L 0.32 probably_damaging(0.994) TCGA-AA-A010-01 7 91742921 91742921 T G CYP51A1 3'UTR 0.39 TCGA-AA-A010-01 7 91792797 91792797 C A LRRD1 Nonsense_Mutation p.E574* 0.31 TCGA-AA-A010-01 7 91792847 91792847 G T LRRD1 Nonsense_Mutation p.S557* 0.31 TCGA-AA-A010-01 7 91793345 91793345 A G LRRD1 Missense_Mutation p.I391T 0.36 deleterious(0) possibly_damaging(0.827) TCGA-AA-A010-01 7 92140283 92140283 T G PEX1 Missense_Mutation p.N521T 0.08 tolerated(0.23) benign(0.002) TCGA-AA-A010-01 7 92158877 92158877 G A RBM48 Missense_Mutation p.A67T 0.37 deleterious(0.03) benign(0.179) TCGA-AA-A010-01 7 92207636 92207636 T C FAM133B Silent p.R91R 0.40 TCGA-AA-A010-01 7 92731456 92731456 G T SAMD9 Missense_Mutation p.L1319I 0.34 tolerated(0.42) benign(0.013) TCGA-AA-A010-01 7 92733424 92733424 T C SAMD9 Missense_Mutation p.T663A 0.45 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 7 92733543 92733543 G T SAMD9 Missense_Mutation p.S623Y 0.40 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 7 92760715 92760715 G A SAMD9L Missense_Mutation p.R1524C 0.37 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 7 92762803 92762803 G A SAMD9L Nonsense_Mutation p.R828* 0.35 TCGA-AA-A010-01 7 92762852 92762852 G T SAMD9L Silent p.V811V 0.41 TCGA-AA-A010-01 7 92763643 92763643 G T SAMD9L Missense_Mutation p.L548I 0.42 tolerated(0.07) probably_damaging(0.965) TCGA-AA-A010-01 7 92764879 92764879 G A SAMD9L Missense_Mutation p.L136F 0.46 tolerated(0.12) possibly_damaging(0.709) TCGA-AA-A010-01 7 92926544 92926544 G T CCDC132 Missense_Mutation p.K450N 0.33 deleterious(0.03) benign(0.205) TCGA-AA-A010-01 7 92978115 92978115 C A CCDC132 Missense_Mutation p.S767Y 0.18 tolerated(0.06) probably_damaging(0.972) TCGA-AA-A010-01 7 93073027 93073027 C G CALCR Missense_Mutation p.A265P 0.32 deleterious(0.03) possibly_damaging(0.89) TCGA-AA-A010-01 7 93106935 93106935 T C CALCR Missense_Mutation p.D102G 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 7 93540048 93540048 C A GNGT1 Intron 0.24 TCGA-AA-A010-01 7 94174909 94174909 G A CASD1 Missense_Mutation p.R510Q 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 7 94257614 94257614 C T SGCE Missense_Mutation p.R97Q 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A010-01 7 94293537 94293537 C T PEG10 Silent p.V223V 0.40 TCGA-AA-A010-01 7 94294753 94294753 T C PEG10 3'UTR 0.32 TCGA-AA-A010-01 7 94295460 94295460 C T PEG10 3'UTR 0.33 TCGA-AA-A010-01 7 94296534 94296534 C A PEG10 3'UTR 0.35 TCGA-AA-A010-01 7 94298071 94298071 G T PEG10 3'UTR 0.31 TCGA-AA-A010-01 7 94298623 94298623 G T PEG10 3'UTR 0.32 TCGA-AA-A010-01 7 94539735 94539735 G T PPP1R9A Nonsense_Mutation p.E104* 0.33 TCGA-AA-A010-01 7 94540569 94540569 G T PPP1R9A Nonsense_Mutation p.E382* 0.32 TCGA-AA-A010-01 7 94937381 94937381 G A PON1 Nonsense_Mutation p.R214* 0.31 TCGA-AA-A010-01 7 94944657 94944657 C A PON1 Missense_Mutation p.G116V 0.49 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 7 95165851 95165851 G T ASB4 Missense_Mutation p.D361Y 0.32 deleterious(0) possibly_damaging(0.903) TCGA-AA-A010-01 7 95668610 95668610 C A DYNC1I1 Silent p.V479V 0.24 TCGA-AA-A010-01 7 95813664 95813664 C A SLC25A13 Nonsense_Mutation p.E369* 0.35 TCGA-AA-A010-01 7 96650372 96650372 T G DLX5 Missense_Mutation p.K182N 0.39 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 7 96810357 96810357 G A ACN9 Missense_Mutation p.E70K 0.37 tolerated(0.59) benign(0.342) TCGA-AA-A010-01 7 97770721 97770721 A G LMTK2 Missense_Mutation p.N82D 0.37 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A010-01 7 97821738 97821738 T G LMTK2 Nonsense_Mutation p.L654* 0.31 TCGA-AA-A010-01 7 97867849 97867849 G A TECPR1 Missense_Mutation p.T336M 0.33 tolerated(1) benign(0.002) TCGA-AA-A010-01 7 97939785 97939785 C T BAIAP2L1 Silent p.P309P 0.38 TCGA-AA-A010-01 7 98257796 98257796 G A NPTX2 Missense_Mutation p.R384H 0.34 tolerated(0.06) benign(0.035) TCGA-AA-A010-01 7 98457836 98457836 C T TMEM130 Missense_Mutation p.A173T 0.33 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 7 98460788 98460788 G T TMEM130 Silent p.V107V 0.41 TCGA-AA-A010-01 7 98586497 98586497 C T TRRAP Missense_Mutation p.R3171W 0.32 probably_damaging(0.995) TCGA-AA-A010-01 7 98930984 98930984 T C ARPC1A Missense_Mutation p.L3P 0.41 tolerated(0.08) possibly_damaging(0.707) TCGA-AA-A010-01 7 99145449 99145449 G A FAM200A Silent p.C194C 0.29 TCGA-AA-A010-01 7 99170461 99170461 G T ZNF655 Nonsense_Mutation p.E279* 0.32 TCGA-AA-A010-01 7 99261650 99261650 T G CYP3A5 Missense_Mutation p.N247H 0.30 tolerated(0.06) benign(0.026) TCGA-AA-A010-01 7 99317965 99317965 C A CYP3A7 Nonsense_Mutation p.E97* 0.43 TCGA-AA-A010-01 7 99319950 99319950 C A CYP3A7 Nonsense_Mutation p.E63* 0.33 TCGA-AA-A010-01 7 99580864 99580864 C A AZGP1P1 RNA 0.40 TCGA-AA-A010-01 7 99662603 99662603 G T ZSCAN21 3'UTR 0.22 TCGA-AA-A010-01 7 99687348 99687348 T C COPS6 Missense_Mutation p.Y105H 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 7 99771584 99771584 G A GPC2 Missense_Mutation p.R256C 0.27 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 7 99802999 99802999 G A STAG3 Missense_Mutation p.R1077H 0.36 deleterious(0.04) possibly_damaging(0.772) TCGA-AA-A010-01 7 99998766 99998766 G A ZCWPW1 Silent p.D606D 0.33 TCGA-AA-A010-01 8 100115205 100115205 G A VPS13B Missense_Mutation p.R146Q 0.31 deleterious(0) possibly_damaging(0.602) TCGA-AA-A010-01 8 100789103 100789103 T G VPS13B Missense_Mutation p.F2475V 0.39 deleterious(0.01) possibly_damaging(0.587) TCGA-AA-A010-01 8 101016258 101016258 C A RGS22 Missense_Mutation p.W841C 0.26 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 8 101065033 101065033 G A RGS22 Silent p.I562I 0.39 TCGA-AA-A010-01 8 101154380 101154380 C A FBXO43 Missense_Mutation p.K34N 0.35 deleterious_low_confidence(0.04) benign(0.031) TCGA-AA-A010-01 8 101237510 101237510 G T SPAG1 Nonsense_Mutation p.E600* 0.49 TCGA-AA-A010-01 8 101624288 101624288 A G SNX31 Missense_Mutation p.L184P 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 8 101625250 101625250 G A SNX31 Missense_Mutation p.R166W 0.31 deleterious(0) possibly_damaging(0.841) TCGA-AA-A010-01 8 101721897 101721897 T G PABPC1 Missense_Mutation p.E345D 0.31 deleterious(0.04) possibly_damaging(0.788) TCGA-AA-A010-01 8 101932798 101932798 C A YWHAZ 3'UTR 0.38 TCGA-AA-A010-01 8 102555468 102555468 G T GRHL2 Splice_Site p.X7_splice 0.49 TCGA-AA-A010-01 8 103357621 103357621 T G UBR5 Intron 0.43 TCGA-AA-A010-01 8 103372360 103372360 C T UBR5 Missense_Mutation p.D109N 0.39 tolerated(0.45) probably_damaging(0.934) TCGA-AA-A010-01 8 10396311 10396311 A T PRSS55 3'UTR 0.47 TCGA-AA-A010-01 8 104330926 104330926 C T FZD6 Missense_Mutation p.R96C 0.34 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 8 104342227 104342227 C T FZD6 Missense_Mutation p.S629F 0.35 deleterious_low_confidence(0.04) benign(0.068) TCGA-AA-A010-01 8 104390459 104390459 C T CTHRC1 Missense_Mutation p.R193C 0.54 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 104453713 104453713 T C DCAF13 Missense_Mutation p.Y525H 0.38 deleterious(0) probably_damaging(0.981) TCGA-AA-A010-01 8 104513276 104513276 G A RIMS2 Silent p.E54E 0.40 TCGA-AA-A010-01 8 10466777 10466777 G A RP1L1 Missense_Mutation p.R1611W 0.42 unknown(0) TCGA-AA-A010-01 8 10468903 10468903 C T RP1L1 Missense_Mutation p.G902D 0.34 possibly_damaging(0.908) TCGA-AA-A010-01 8 10470709 10470709 G A RP1L1 Missense_Mutation p.S300L 0.43 benign(0) TCGA-AA-A010-01 8 104778497 104778497 C A RIMS2 Missense_Mutation p.L144I 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-A010-01 8 104973300 104973300 G T RIMS2 Missense_Mutation p.K903N 0.26 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-AA-A010-01 8 105361114 105361114 G T DCSTAMP Nonsense_Mutation p.E112* 0.34 TCGA-AA-A010-01 8 105368360 105368360 C A DCSTAMP Missense_Mutation p.F449L 0.35 deleterious(0) possibly_damaging(0.871) TCGA-AA-A010-01 8 10557986 10557986 T G C8orf74 3'UTR 0.38 TCGA-AA-A010-01 8 10584122 10584122 G A SOX7 Missense_Mutation p.A150V 0.38 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 8 10622964 10622964 C T PINX1 Missense_Mutation p.A312T 0.39 tolerated(0.58) benign(0.001) TCGA-AA-A010-01 8 106813645 106813645 T G ZFPM2 Silent p.T445T 0.32 TCGA-AA-A010-01 8 106814998 106814998 G A ZFPM2 Silent p.P896P 0.34 TCGA-AA-A010-01 8 106815063 106815063 A T ZFPM2 Missense_Mutation p.K918I 0.42 deleterious(0) probably_damaging(0.983) TCGA-AA-A010-01 8 10755924 10755924 G A XKR6 Silent p.I488I 0.39 TCGA-AA-A010-01 8 10756224 10756224 G T XKR6 Silent p.I388I 0.32 TCGA-AA-A010-01 8 109001357 109001357 C A RSPO2 Missense_Mutation p.Q70H 0.45 deleterious(0) benign(0.331) TCGA-AA-A010-01 8 109489054 109489054 G T EMC2 Missense_Mutation p.R212I 0.31 deleterious(0.03) benign(0.111) TCGA-AA-A010-01 8 109498788 109498788 C T EMC2 Silent p.V285V 0.38 TCGA-AA-A010-01 8 110447459 110447459 A G PKHD1L1 Silent p.G1127G 0.21 TCGA-AA-A010-01 8 110455940 110455940 G C PKHD1L1 Missense_Mutation p.A1534P 0.41 tolerated(0.41) benign(0.028) TCGA-AA-A010-01 8 110457371 110457371 C A PKHD1L1 Missense_Mutation p.S1758Y 0.38 deleterious(0.02) benign(0.392) TCGA-AA-A010-01 8 110530611 110530611 C T PKHD1L1 Missense_Mutation p.P3969S 0.23 tolerated(0.16) benign(0.009) TCGA-AA-A010-01 8 11177158 11177158 A C MTMR9 Intron 0.33 TCGA-AA-A010-01 8 11282071 11282071 T C FAM167A Silent p.K152K 0.36 TCGA-AA-A010-01 8 113318305 113318305 C A CSMD3 Nonsense_Mutation p.E2668* 0.32 TCGA-AA-A010-01 8 113318404 113318404 G T CSMD3 Missense_Mutation p.P2635T 0.45 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A010-01 8 113326691 113326691 C T CSMD3 Missense_Mutation p.E2506K 0.38 deleterious(0) probably_damaging(0.981) TCGA-AA-A010-01 8 113697735 113697735 A C CSMD3 Silent p.A794A 0.40 TCGA-AA-A010-01 8 113988126 113988126 T G CSMD3 Silent p.R428R 0.34 TCGA-AA-A010-01 8 114186078 114186078 G A CSMD3 Silent p.F194F 0.42 TCGA-AA-A010-01 8 116427188 116427188 C T TRPS1 Missense_Mutation p.S983N 0.32 tolerated(0.51) benign(0.007) TCGA-AA-A010-01 8 116427193 116427193 C T TRPS1 Silent p.R981R 0.30 TCGA-AA-A010-01 8 11643887 11643887 G T NEIL2 3'UTR 0.46 TCGA-AA-A010-01 8 116617112 116617112 C T TRPS1 Missense_Mutation p.E362K 0.35 deleterious_low_confidence(0) possibly_damaging(0.729) TCGA-AA-A010-01 8 116631435 116631435 C T TRPS1 Missense_Mutation p.R297H 0.33 tolerated_low_confidence(0.21) probably_damaging(0.927) TCGA-AA-A010-01 8 116632163 116632163 C T TRPS1 Silent p.Q54Q 0.38 TCGA-AA-A010-01 8 117783848 117783848 G T UTP23 Nonsense_Mutation p.E173* 0.41 TCGA-AA-A010-01 8 118147548 118147548 G A SLC30A8 5'Flank 0.21 TCGA-AA-A010-01 8 118825173 118825173 C T EXT1 Missense_Mutation p.D554N 0.38 tolerated(0.39) benign(0.009) TCGA-AA-A010-01 8 11995934 11995934 C A USP17L2 Missense_Mutation p.E112D 0.25 tolerated(0.06) possibly_damaging(0.528) TCGA-AA-A010-01 8 120435265 120435265 A G NOV Missense_Mutation p.K323E 0.39 deleterious(0.01) benign(0.158) TCGA-AA-A010-01 8 120602846 120602846 C A ENPP2 Missense_Mutation p.R421I 0.41 deleterious(0) probably_damaging(0.937) TCGA-AA-A010-01 8 120608240 120608240 C A ENPP2 Missense_Mutation p.E325D 0.36 tolerated(0.49) probably_damaging(0.979) TCGA-AA-A010-01 8 120613682 120613682 C A ENPP2 Missense_Mutation p.R285I 0.40 deleterious(0) probably_damaging(0.958) TCGA-AA-A010-01 8 120613688 120613688 T C ENPP2 Missense_Mutation p.E283G 0.43 deleterious(0.02) probably_damaging(0.955) TCGA-AA-A010-01 8 120797469 120797469 C A TAF2 Nonsense_Mutation p.E611* 0.21 TCGA-AA-A010-01 8 121180438 121180438 G A COL14A1 Missense_Mutation p.V130I 0.32 tolerated(0.19) benign(0.228) TCGA-AA-A010-01 8 121290381 121290381 G T COL14A1 Missense_Mutation p.R1082I 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 8 121295980 121295981 - A COL14A1 Frame_Shift_Ins p.N1312Kfs*3 0.28 TCGA-AA-A010-01 8 121823951 121823951 C T SNTB1 Missense_Mutation p.A45T 0.38 tolerated(0.84) benign(0.011) TCGA-AA-A010-01 8 123965624 123965624 C A ZHX2 Missense_Mutation p.S625Y 0.40 tolerated(0.23) benign(0.406) TCGA-AA-A010-01 8 124164093 124164093 C A TBC1D31 Missense_Mutation p.L1039I 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 8 124266004 124266004 C T ZHX1 Missense_Mutation p.S728N 0.30 deleterious(0.04) benign(0.357) TCGA-AA-A010-01 8 124266785 124266785 G A ZHX1 Missense_Mutation p.R468W 0.43 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 8 124267739 124267739 C A ZHX1 Missense_Mutation p.D150Y 0.39 deleterious(0.01) probably_damaging(0.931) TCGA-AA-A010-01 8 124267981 124267981 C T ZHX1 Missense_Mutation p.G69E 0.38 deleterious(0) probably_damaging(0.986) TCGA-AA-A010-01 8 124408555 124408555 C T ATAD2 Missense_Mutation p.A15T 0.48 tolerated_low_confidence(0.3) benign(0) TCGA-AA-A010-01 8 124453576 124453576 G A WDYHV1 Missense_Mutation p.S180N 0.33 tolerated(0.28) benign(0.214) TCGA-AA-A010-01 8 124525479 124525479 G T FBXO32 Missense_Mutation p.L204I 0.35 tolerated(0.2) benign(0.249) TCGA-AA-A010-01 8 124664059 124664059 G A KLHL38 Silent p.L370L 0.28 TCGA-AA-A010-01 8 124821165 124821165 G A FAM91A1 Missense_Mutation p.E724K 0.41 tolerated(0.05) benign(0.105) TCGA-AA-A010-01 8 125022842 125022842 A C FER1L6 Missense_Mutation p.N570T 0.33 tolerated(0.23) benign(0.002) TCGA-AA-A010-01 8 125052186 125052186 G A FER1L6 Missense_Mutation p.S843N 0.30 tolerated(0.18) benign(0.122) TCGA-AA-A010-01 8 125115506 125115506 C T FER1L6 Missense_Mutation p.R1749C 0.49 deleterious(0) probably_damaging(0.97) TCGA-AA-A010-01 8 125339608 125339608 A C TMEM65 Missense_Mutation p.I135S 0.37 tolerated(0.06) benign(0.124) TCGA-AA-A010-01 8 125464378 125464378 G A TRMT12 Missense_Mutation p.A404T 0.48 tolerated(0.42) benign(0.019) TCGA-AA-A010-01 8 125464602 125464602 C T TRMT12 3'UTR 0.37 TCGA-AA-A010-01 8 125499040 125499040 T C RNF139 Missense_Mutation p.S384P 0.39 tolerated(0.95) benign(0.006) TCGA-AA-A010-01 8 125989167 125989167 C T ZNF572 Silent p.P219P 0.48 TCGA-AA-A010-01 8 125989784 125989784 C T ZNF572 Missense_Mutation p.S425F 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 8 126019705 126019705 G T SQLE Missense_Mutation p.K266N 0.31 deleterious(0.03) possibly_damaging(0.666) TCGA-AA-A010-01 8 126069032 126069032 A C KIAA0196 Missense_Mutation p.F635V 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 12878856 12878856 G T KIAA1456 Missense_Mutation p.R223I 0.35 tolerated(0.18) benign(0.235) TCGA-AA-A010-01 8 12880696 12880696 A G KIAA1456 3'UTR 0.35 TCGA-AA-A010-01 8 12881390 12881390 T G KIAA1456 3'UTR 0.37 TCGA-AA-A010-01 8 12883576 12883576 C A KIAA1456 3'UTR 0.41 TCGA-AA-A010-01 8 12884554 12884554 C A KIAA1456 3'UTR 0.32 TCGA-AA-A010-01 8 12885047 12885047 A C KIAA1456 3'UTR 0.27 TCGA-AA-A010-01 8 12886678 12886678 C A KIAA1456 3'UTR 0.34 TCGA-AA-A010-01 8 12943366 12943366 G A DLC1 Missense_Mutation p.S1514F 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 8 12947955 12947955 G A DLC1 Missense_Mutation p.R1294C 0.43 tolerated(0.15) probably_damaging(0.998) TCGA-AA-A010-01 8 12948898 12948898 C A DLC1 Missense_Mutation p.D1262Y 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 12957878 12957878 G A DLC1 Silent p.H656H 0.37 TCGA-AA-A010-01 8 130763787 130763787 C A GSDMC Splice_Site p.X315_splice 0.33 TCGA-AA-A010-01 8 130765061 130765061 C T GSDMC Missense_Mutation p.E243K 0.31 tolerated(0.89) benign(0) TCGA-AA-A010-01 8 130788502 130788502 T C GSDMC Missense_Mutation p.S84G 0.31 tolerated(0.18) benign(0.105) TCGA-AA-A010-01 8 130864485 130864485 G A FAM49B Nonsense_Mutation p.R186* 0.44 TCGA-AA-A010-01 8 131092165 131092165 T C ASAP1 Silent p.G875G 0.29 TCGA-AA-A010-01 8 131127946 131127946 G A ASAP1 Silent p.H700H 0.47 TCGA-AA-A010-01 8 131922095 131922096 - TCCTTGAC ADCY8 Frame_Shift_Ins p.T500Sfs*10 0.16 TCGA-AA-A010-01 8 132052058 132052058 G T ADCY8 Missense_Mutation p.F174L 0.38 tolerated(0.23) benign(0.441) TCGA-AA-A010-01 8 133045401 133045401 C T OC90 Silent p.E248E 0.37 TCGA-AA-A010-01 8 133092072 133092072 G T HHLA1 Missense_Mutation p.A309D 0.41 tolerated(0.1) benign(0.288) TCGA-AA-A010-01 8 133192428 133192428 G A KCNQ3 Silent p.G251G 0.29 TCGA-AA-A010-01 8 13356915 13356915 C A DLC1 Missense_Mutation p.E222D 0.43 tolerated_low_confidence(0.08) benign(0.009) TCGA-AA-A010-01 8 13357064 13357064 C A DLC1 Missense_Mutation p.A173S 0.39 tolerated_low_confidence(0.87) benign(0.002) TCGA-AA-A010-01 8 133723106 133723106 C T TMEM71 3'UTR 0.27 TCGA-AA-A010-01 8 133740101 133740101 G A TMEM71 Missense_Mutation p.L188F 0.39 tolerated(0.67) possibly_damaging(0.857) TCGA-AA-A010-01 8 133806824 133806824 C A PHF20L1 Missense_Mutation p.F84L 0.45 tolerated(0.67) benign(0.005) TCGA-AA-A010-01 8 133854770 133854770 C A PHF20L1 Missense_Mutation p.H800N 0.44 tolerated(0.08) benign(0.122) TCGA-AA-A010-01 8 133899598 133899598 G T TG Missense_Mutation p.D661Y 0.39 deleterious(0.01) benign(0.332) TCGA-AA-A010-01 8 133931738 133931738 C A TG Missense_Mutation p.T1499N 0.50 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 134050854 134050854 C T SLA Missense_Mutation p.R289Q 0.37 tolerated(0.08) possibly_damaging(0.688) TCGA-AA-A010-01 8 134233083 134233083 C T WISP1 Silent p.F203F 0.27 TCGA-AA-A010-01 8 13425513 13425513 G A C8orf48 3'UTR 0.32 TCGA-AA-A010-01 8 135649906 135649906 C A ZFAT Missense_Mutation p.K82N 0.31 deleterious(0) benign(0.419) TCGA-AA-A010-01 8 13947915 13947915 C T SGCZ 3'UTR 0.44 TCGA-AA-A010-01 8 139606391 139606391 G T COL22A1 Missense_Mutation p.S1495Y 0.43 unknown(0) TCGA-AA-A010-01 8 139626137 139626137 C A COL22A1 Missense_Mutation p.Q1317H 0.31 unknown(0) TCGA-AA-A010-01 8 139824162 139824162 G A COL22A1 Silent p.C443C 0.37 TCGA-AA-A010-01 8 139895461 139895461 C T COL22A1 5'UTR 0.32 TCGA-AA-A010-01 8 14095139 14095139 C A SGCZ Missense_Mutation p.R129I 0.37 deleterious(0.02) benign(0.392) TCGA-AA-A010-01 8 141415692 141415692 A C TRAPPC9 Missense_Mutation p.I429S 0.34 deleterious(0) probably_damaging(0.946) TCGA-AA-A010-01 8 141889730 141889730 T C PTK2 Missense_Mutation p.I68V 0.38 tolerated(0.09) probably_damaging(0.99) TCGA-AA-A010-01 8 142178139 142178139 A C DENND3 Missense_Mutation p.K517T 0.35 deleterious(0.02) possibly_damaging(0.833) TCGA-AA-A010-01 8 142221695 142221695 G T SLC45A4 Missense_Mutation p.S748Y 0.39 deleterious_low_confidence(0) benign(0.102) TCGA-AA-A010-01 8 142367321 142367321 G A GPR20 Missense_Mutation p.R235C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 142500273 142500273 G A MROH5 3'Flank 0.37 TCGA-AA-A010-01 8 143562651 143562651 G T BAI1 Missense_Mutation p.G622V 0.41 deleterious(0) probably_damaging(0.988) TCGA-AA-A010-01 8 143625724 143625724 C T BAI1 Silent p.G1567G 0.32 TCGA-AA-A010-01 8 143695326 143695326 C T ARC Missense_Mutation p.A103T 0.44 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-AA-A010-01 8 143763159 143763159 C T PSCA Intron 0.44 TCGA-AA-A010-01 8 143958116 143958116 C T CYP11B1 Missense_Mutation p.D261N 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A010-01 8 143996139 143996139 C T CYP11B2 Missense_Mutation p.D261N 0.28 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 8 143999232 143999232 C T CYP11B2 Missense_Mutation p.V9M 0.38 tolerated(0.12) benign(0.05) TCGA-AA-A010-01 8 144407663 144407663 C A TOP1MT Missense_Mutation p.G175V 0.37 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 8 144681263 144681263 G A TIGD5 Missense_Mutation p.G397D 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 8 144732042 144732042 G T ZNF623 5'UTR 0.34 TCGA-AA-A010-01 8 144808965 144808965 C T FAM83H Missense_Mutation p.R889Q 0.36 tolerated(0.38) benign(0.144) TCGA-AA-A010-01 8 144941923 144941923 C T EPPK1 Silent p.T1833T 0.36 TCGA-AA-A010-01 8 145009009 145009009 C T PLEC Missense_Mutation p.R442H 0.35 unknown(0) TCGA-AA-A010-01 8 145011358 145011358 G T PLEC Missense_Mutation p.A243D 0.29 unknown(0) TCGA-AA-A010-01 8 145114791 145114791 C T OPLAH Missense_Mutation p.E49K 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 145138862 145138862 G T GPAA1 Missense_Mutation p.D179Y 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 145540257 145540257 T C DGAT1 Missense_Mutation p.Y476C 0.37 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 8 145579807 145579807 G A FBXL6 Silent p.S431S 0.42 TCGA-AA-A010-01 8 145621707 145621707 G T CPSF1 Silent p.I945I 0.31 TCGA-AA-A010-01 8 145947053 145947053 C A ZNF251 Missense_Mutation p.K664N 0.36 tolerated_low_confidence(0.27) benign(0.403) TCGA-AA-A010-01 8 146067553 146067553 G T ZNF7 Missense_Mutation p.R354I 0.33 tolerated(0.11) probably_damaging(0.998) TCGA-AA-A010-01 8 146203030 146203030 C A ZNF252P RNA 0.27 TCGA-AA-A010-01 8 15095148 15095148 G A SGCZ 5'UTR 0.47 TCGA-AA-A010-01 8 15480695 15480695 G A TUSC3 Missense_Mutation p.R82Q 0.36 deleterious(0) possibly_damaging(0.889) TCGA-AA-A010-01 8 15519698 15519698 A G TUSC3 Missense_Mutation p.T201A 0.38 tolerated(0.33) benign(0.017) TCGA-AA-A010-01 8 15588189 15588189 G A TUSC3 Silent p.G271G 0.27 TCGA-AA-A010-01 8 15615347 15615347 A C TUSC3 3'UTR 0.42 TCGA-AA-A010-01 8 16012573 16012573 C A MSR1 Missense_Mutation p.G300C 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 16032709 16032709 A C MSR1 Missense_Mutation p.I68M 0.39 deleterious(0.01) possibly_damaging(0.563) TCGA-AA-A010-01 8 1616656 1616656 C T DLGAP2 Missense_Mutation p.R578C 0.38 tolerated(0.06) probably_damaging(0.95) TCGA-AA-A010-01 8 16859282 16859282 C T FGF20 Missense_Mutation p.G87D 0.41 deleterious(0.01) probably_damaging(0.964) TCGA-AA-A010-01 8 17014295 17014295 C A ZDHHC2 Silent p.I21I 0.27 TCGA-AA-A010-01 8 17104696 17104696 C T VPS37A 5'UTR 0.39 TCGA-AA-A010-01 8 1719193 1719193 G T CLN8 5'UTR 0.34 TCGA-AA-A010-01 8 17486122 17486122 T C PDGFRL Missense_Mutation p.F211S 0.32 deleterious(0) possibly_damaging(0.772) TCGA-AA-A010-01 8 17612227 17612227 C A MTUS1 Missense_Mutation p.V364L 0.41 deleterious(0.04) benign(0.056) TCGA-AA-A010-01 8 17612659 17612659 C A MTUS1 Nonsense_Mutation p.E220* 0.32 TCGA-AA-A010-01 8 17726236 17726236 G A FGL1 Silent p.Y200Y 0.42 TCGA-AA-A010-01 8 17739640 17739640 G A FGL1 Missense_Mutation p.R38C 0.38 deleterious(0) possibly_damaging(0.614) TCGA-AA-A010-01 8 17842992 17842992 G A PCM1 Missense_Mutation p.R1382Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 8 17843051 17843051 T G PCM1 Missense_Mutation p.F1402V 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 8 17917197 17917197 C A ASAH1 Missense_Mutation p.K283N 0.40 deleterious(0.03) possibly_damaging(0.726) TCGA-AA-A010-01 8 1905478 1905478 C A ARHGEF10 3'UTR 0.39 TCGA-AA-A010-01 8 1954659 1954659 G A KBTBD11 3'UTR 0.34 TCGA-AA-A010-01 8 196079 196079 G T ZNF596 Missense_Mutation p.R411I 0.33 deleterious(0.01) probably_damaging(0.987) TCGA-AA-A010-01 8 19701614 19701614 G A INTS10 Missense_Mutation p.D583N 0.41 deleterious(0.01) benign(0.059) TCGA-AA-A010-01 8 19813368 19813368 G T LPL Silent p.V264V 0.40 TCGA-AA-A010-01 8 20030606 20030606 T C SLC18A1 Missense_Mutation p.D222G 0.28 deleterious(0.01) probably_damaging(0.96) TCGA-AA-A010-01 8 20031894 20031894 T A SLC18A1 Silent p.G203G 0.31 TCGA-AA-A010-01 8 20077935 20077935 G A ATP6V1B2 3'UTR 0.33 TCGA-AA-A010-01 8 20110511 20110511 G A LZTS1 Missense_Mutation p.P311S 0.42 deleterious(0.03) benign(0.004) TCGA-AA-A010-01 8 2017609 2017609 G A MYOM2 Silent p.P262P 0.35 TCGA-AA-A010-01 8 2077195 2077195 G A MYOM2 Missense_Mutation p.E1259K 0.40 tolerated(0.08) benign(0.152) TCGA-AA-A010-01 8 21903719 21903719 A G FGF17 Missense_Mutation p.Q56R 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 8 22021643 22021643 C A SFTPC Intron 0.31 TCGA-AA-A010-01 8 22173829 22173829 C T PIWIL2 Silent p.F760F 0.23 TCGA-AA-A010-01 8 22211847 22211847 C A PIWIL2 Silent p.V907V 0.32 TCGA-AA-A010-01 8 22438917 22438917 A G PDLIM2 Missense_Mutation p.D290G 0.16 tolerated(0.25) benign(0.043) TCGA-AA-A010-01 8 22550336 22550336 T C EGR3 Missense_Mutation p.D41G 0.36 tolerated(0.23) benign(0.05) TCGA-AA-A010-01 8 22777724 22777724 C T PEBP4 Silent p.P77P 0.47 TCGA-AA-A010-01 8 22884791 22884791 C T TNFRSF10B Missense_Mutation p.R264Q 0.47 tolerated(0.6) benign(0.009) TCGA-AA-A010-01 8 22960468 22960468 G A TNFRSF10C 5'UTR 0.38 TCGA-AA-A010-01 8 23069695 23069695 G A TNFRSF10A Missense_Mutation p.L113F 0.40 tolerated(0.85) benign(0.003) TCGA-AA-A010-01 8 23291840 23291840 G T ENTPD4 Missense_Mutation p.L538I 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A010-01 8 24346790 24346790 T G ADAM7 Missense_Mutation p.F404V 0.40 tolerated(0.46) benign(0.021) TCGA-AA-A010-01 8 24349484 24349484 C G ADAM7 Silent p.G475G 0.49 TCGA-AA-A010-01 8 24349566 24349566 A G ADAM7 Missense_Mutation p.K503E 0.44 tolerated(0.26) benign(0.075) TCGA-AA-A010-01 8 24772061 24772061 C T NEFM Missense_Mutation p.S252L 0.43 deleterious(0.04) unknown(0) TCGA-AA-A010-01 8 25154087 25154087 G A DOCK5 Missense_Mutation p.E177K 0.41 tolerated(0.94) benign(0.001) TCGA-AA-A010-01 8 25268908 25268908 C A DOCK5 3'UTR 0.47 TCGA-AA-A010-01 8 25319670 25319670 G A CDCA2 Silent p.Q111Q 0.40 TCGA-AA-A010-01 8 25745485 25745485 G A EBF2 Missense_Mutation p.T252I 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A010-01 8 26237216 26237216 G A BNIP3L 5'Flank 0.37 TCGA-AA-A010-01 8 26238713 26238713 C A BNIP3L 5'Flank 0.19 TCGA-AA-A010-01 8 26267980 26267980 T C BNIP3L 3'UTR 0.33 TCGA-AA-A010-01 8 26627981 26627981 C T ADRA1A Silent p.P362P 0.39 TCGA-AA-A010-01 8 26628138 26628138 A G ADRA1A Missense_Mutation p.I310T 0.25 deleterious(0.04) probably_damaging(0.955) TCGA-AA-A010-01 8 27151726 27151726 C A TRIM35 Missense_Mutation p.E211D 0.46 deleterious(0.03) benign(0.242) TCGA-AA-A010-01 8 27327349 27327349 G A CHRNA2 Missense_Mutation p.R75C 0.75 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 27455997 27455997 C A CLU Missense_Mutation p.Q440H 0.35 tolerated(0.07) benign(0.041) TCGA-AA-A010-01 8 27593629 27593629 G T CCDC25 3'UTR 0.34 TCGA-AA-A010-01 8 27634629 27634629 G A ESCO2 Silent p.E268E 0.49 TCGA-AA-A010-01 8 27650200 27650200 G T ESCO2 Nonsense_Mutation p.E457* 0.31 TCGA-AA-A010-01 8 27680651 27680651 C T PBK Missense_Mutation p.R75Q 0.31 tolerated(1) benign(0.002) TCGA-AA-A010-01 8 27690596 27690596 T C PBK Missense_Mutation p.K12R 0.42 tolerated(0.44) benign(0.011) TCGA-AA-A010-01 8 2808750 2808750 C A CSMD1 Nonsense_Mutation p.E3363* 0.53 TCGA-AA-A010-01 8 2815269 2815269 G A CSMD1 Missense_Mutation p.R3255C 0.35 probably_damaging(0.999) TCGA-AA-A010-01 8 2820886 2820886 C T CSMD1 Silent p.Q3104Q 0.23 TCGA-AA-A010-01 8 2823423 2823423 C T CSMD1 Missense_Mutation p.D3052N 0.32 possibly_damaging(0.771) TCGA-AA-A010-01 8 28378335 28378335 G T FZD3 Missense_Mutation p.D124Y 0.45 deleterious(0) possibly_damaging(0.826) TCGA-AA-A010-01 8 28420409 28420409 C T FZD3 Missense_Mutation p.R628W 0.29 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-AA-A010-01 8 28988068 28988068 T C KIF13B Silent p.G1019G 0.35 TCGA-AA-A010-01 8 29013284 29013284 C T KIF13B Silent p.T498T 0.27 TCGA-AA-A010-01 8 29046119 29046119 C A KIF13B Missense_Mutation p.D77Y 0.39 deleterious(0) possibly_damaging(0.771) TCGA-AA-A010-01 8 2910080 2910080 G T CSMD1 Missense_Mutation p.H2522N 0.42 benign(0) TCGA-AA-A010-01 8 29197744 29197744 A C DUSP4 Missense_Mutation p.F150L 0.29 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 8 2964054 2964054 A G CSMD1 Silent p.C2315C 0.30 TCGA-AA-A010-01 8 2975929 2975929 C A CSMD1 Missense_Mutation p.R2141I 0.38 possibly_damaging(0.851) TCGA-AA-A010-01 8 29989648 29989648 C T LEPROTL1 Intron 0.39 TCGA-AA-A010-01 8 3057285 3057285 G T CSMD1 Missense_Mutation p.F1715L 0.35 probably_damaging(0.931) TCGA-AA-A010-01 8 3057329 3057329 C A CSMD1 Nonsense_Mutation p.E1701* 0.39 TCGA-AA-A010-01 8 30701515 30701515 G A TEX15 Silent p.N1673N 0.42 TCGA-AA-A010-01 8 30703144 30703144 T C TEX15 Silent p.E1130E 0.33 TCGA-AA-A010-01 8 30916744 30916744 G A WRN Missense_Mutation p.D58N 0.33 deleterious(0.04) benign(0.01) TCGA-AA-A010-01 8 3165998 3165998 G A CSMD1 Missense_Mutation p.P1220L 0.42 probably_damaging(1) TCGA-AA-A010-01 8 32505741 32505741 T G NRG1 Intron 0.36 TCGA-AA-A010-01 8 32613973 32613973 C T NRG1 Nonsense_Mutation p.R291* 0.31 TCGA-AA-A010-01 8 33358068 33358068 G T MAK16 3'UTR 0.33 TCGA-AA-A010-01 8 33367287 33367287 G A TTI2 Missense_Mutation p.L271F 0.49 deleterious(0) probably_damaging(0.981) TCGA-AA-A010-01 8 35425736 35425736 G T UNC5D Missense_Mutation p.R148M 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 8 35563458 35563458 C A UNC5D Missense_Mutation p.L366I 0.32 tolerated(0.15) benign(0.03) TCGA-AA-A010-01 8 3611473 3611473 C A CSMD1 Nonsense_Mutation p.G304* 0.38 TCGA-AA-A010-01 8 37672480 37672480 G A GPR124 Silent p.E111E 0.40 TCGA-AA-A010-01 8 37701987 37701987 A C BRF2 3'UTR 0.31 TCGA-AA-A010-01 8 37704411 37704411 G A BRF2 Missense_Mutation p.S166F 0.43 tolerated(0.06) benign(0.064) TCGA-AA-A010-01 8 38105153 38105153 G T DDHD2 Intron 0.36 TCGA-AA-A010-01 8 38162809 38162809 G A WHSC1L1 Silent p.C799C 0.34 TCGA-AA-A010-01 8 3855556 3855556 C A CSMD1 Missense_Mutation p.E229D 0.36 benign(0.002) TCGA-AA-A010-01 8 38831690 38831690 C T HTRA4 5'UTR 0.44 TCGA-AA-A010-01 8 38832616 38832616 C T HTRA4 Missense_Mutation p.A178V 0.40 deleterious(0.01) possibly_damaging(0.636) TCGA-AA-A010-01 8 38852976 38852976 G A TM2D2 Intron 0.45 TCGA-AA-A010-01 8 38883327 38883327 A C ADAM9 Missense_Mutation p.K307T 0.30 deleterious(0.01) probably_damaging(0.923) TCGA-AA-A010-01 8 3889513 3889513 T C CSMD1 Missense_Mutation p.Y175C 0.27 probably_damaging(0.944) TCGA-AA-A010-01 8 38899486 38899486 T C ADAM9 Silent p.S384S 0.39 TCGA-AA-A010-01 8 39091507 39091507 G A ADAM32 Missense_Mutation p.R575Q 0.29 tolerated(0.38) benign(0.421) TCGA-AA-A010-01 8 39142375 39142375 C A ADAM32 3'UTR 0.34 TCGA-AA-A010-01 8 39486897 39486897 A C ADAM18 Missense_Mutation p.K176T 0.29 tolerated(0.33) benign(0.004) TCGA-AA-A010-01 8 39678582 39678582 G A ADAM2 Missense_Mutation p.S151F 0.30 tolerated(0.65) benign(0.032) TCGA-AA-A010-01 8 39871184 39871184 C A IDO2 Missense_Mutation p.L287I 0.36 tolerated(0.15) probably_damaging(0.953) TCGA-AA-A010-01 8 40011873 40011873 A G C8orf4 3'UTR 0.31 TCGA-AA-A010-01 8 40554908 40554908 C T ZMAT4 Missense_Mutation p.D69N 0.33 tolerated(0.44) benign(0.242) TCGA-AA-A010-01 8 41530355 41530355 T C ANK1 Missense_Mutation p.D1579G 0.39 deleterious(0) possibly_damaging(0.898) TCGA-AA-A010-01 8 41582070 41582070 C T ANK1 Silent p.T238T 0.34 TCGA-AA-A010-01 8 41753879 41753879 C A ANK1 Missense_Mutation p.K40N 0.37 deleterious(0.03) benign(0.011) TCGA-AA-A010-01 8 41789773 41789773 C T KAT6A Missense_Mutation p.A1989T 0.39 unknown(0) TCGA-AA-A010-01 8 42045470 42045470 G A PLAT Silent p.F106F 0.37 TCGA-AA-A010-01 8 42176791 42176791 G T IKBKB Missense_Mutation p.M456I 0.42 deleterious(0.01) benign(0.104) TCGA-AA-A010-01 8 42233290 42233290 C T DKK4 Missense_Mutation p.R57H 0.35 tolerated(0.84) benign(0.018) TCGA-AA-A010-01 8 42401726 42401726 C T SMIM19 Silent p.F37F 0.36 TCGA-AA-A010-01 8 42407773 42407773 G A SMIM19 3'UTR 0.36 TCGA-AA-A010-01 8 43046739 43046739 G A HGSNAT Splice_Site p.X417_splice 0.38 TCGA-AA-A010-01 8 43155717 43155717 A C RNU6-104P 5'Flank 0.38 TCGA-AA-A010-01 8 43197031 43197031 G T POTEA RNA 0.32 TCGA-AA-A010-01 8 48772221 48772221 G T PRKDC Nonsense_Mutation p.S2052* 0.31 TCGA-AA-A010-01 8 48801610 48801610 T C PRKDC Silent p.L1414L 0.35 TCGA-AA-A010-01 8 48852204 48852204 G T PRKDC Nonsense_Mutation p.Y340* 0.37 TCGA-AA-A010-01 8 48852241 48852241 G A PRKDC Missense_Mutation p.A328V 0.27 benign(0.373) TCGA-AA-A010-01 8 48882381 48882381 C T MCM4 Nonsense_Mutation p.R400* 0.34 TCGA-AA-A010-01 8 49637197 49637197 A - EFCAB1 3'UTR 0.21 TCGA-AA-A010-01 8 51314842 51314842 G T SNTG1 Missense_Mutation p.D34Y 0.34 deleterious(0) probably_damaging(0.984) TCGA-AA-A010-01 8 52321937 52321937 G A PXDNL Silent p.F749F 0.47 TCGA-AA-A010-01 8 52322048 52322048 G A PXDNL Silent p.R712R 0.37 TCGA-AA-A010-01 8 53062474 53062474 G T ST18 Missense_Mutation p.L624M 0.36 tolerated(0.06) possibly_damaging(0.701) TCGA-AA-A010-01 8 53852547 53852547 C T NPBWR1 Missense_Mutation p.S27L 0.31 tolerated(0.11) benign(0.089) TCGA-AA-A010-01 8 54142295 54142295 G A OPRK1 Silent p.F235F 0.36 TCGA-AA-A010-01 8 55370987 55370987 G A SOX17 Missense_Mutation p.E97K 0.34 deleterious(0.02) possibly_damaging(0.448) TCGA-AA-A010-01 8 55538664 55538664 A C RP1 Missense_Mutation p.N741T 0.33 deleterious(0.01) possibly_damaging(0.642) TCGA-AA-A010-01 8 55542174 55542174 A G RP1 Missense_Mutation p.Y1911C 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 8 56015398 56015398 C T XKR4 Missense_Mutation p.A117V 0.34 tolerated(0.15) benign(0.028) TCGA-AA-A010-01 8 56725608 56725608 T G TGS1 Missense_Mutation p.I790M 0.41 deleterious(0) possibly_damaging(0.735) TCGA-AA-A010-01 8 56986400 56986400 C T RPS20 Intron 0.32 TCGA-AA-A010-01 8 57025882 57025882 G A MOS Silent p.F220F 0.40 TCGA-AA-A010-01 8 57079148 57079148 G T PLAG1 Missense_Mutation p.P386H 0.31 tolerated(0.12) possibly_damaging(0.478) TCGA-AA-A010-01 8 57358519 57358519 C T PENK 5'UTR 0.38 TCGA-AA-A010-01 8 57876515 57876515 G C IMPAD1 Missense_Mutation p.A306G 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 59060372 59060372 G A FAM110B 3'UTR 0.36 TCGA-AA-A010-01 8 59404982 59404982 C T CYP7A1 Missense_Mutation p.R382Q 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 59493166 59493166 C T SDCBP Missense_Mutation p.R281W 0.37 tolerated(0.09) benign(0.015) TCGA-AA-A010-01 8 59720328 59720328 T C TOX Missense_Mutation p.D520G 0.38 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 8 59728228 59728228 G A TOX Missense_Mutation p.S354L 0.44 deleterious(0.01) benign(0.053) TCGA-AA-A010-01 8 60031588 60031588 T A TOX 5'UTR 0.34 TCGA-AA-A010-01 8 61748644 61748644 A C CHD7 Missense_Mutation p.K1264T 0.45 probably_damaging(0.994) TCGA-AA-A010-01 8 62460750 62460750 C T ASPH Silent p.E548E 0.43 TCGA-AA-A010-01 8 6296571 6296571 G T MCPH1 Missense_Mutation p.K178N 0.32 deleterious(0) probably_damaging(0.991) TCGA-AA-A010-01 8 6302770 6302770 T G MCPH1 Missense_Mutation p.C509W 0.40 tolerated(0.18) benign(0.398) TCGA-AA-A010-01 8 63492216 63492216 G A NKAIN3 Missense_Mutation p.R58K 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-AA-A010-01 8 6360592 6360592 C T ANGPT2 3'UTR 0.39 TCGA-AA-A010-01 8 65494077 65494077 C T BHLHE22 Missense_Mutation p.R244W 0.46 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 8 65496078 65496078 G T BHLHE22 3'UTR 0.28 TCGA-AA-A010-01 8 65509187 65509187 C A CYP7B1 3'UTR 0.27 TCGA-AA-A010-01 8 65527678 65527678 T C CYP7B1 Missense_Mutation p.E321G 0.38 deleterious(0.04) probably_damaging(1) TCGA-AA-A010-01 8 65528271 65528271 A G CYP7B1 Missense_Mutation p.V276A 0.32 tolerated(0.78) benign(0.007) TCGA-AA-A010-01 8 66620202 66620202 G T MTFR1 Nonsense_Mutation p.G297* 0.19 TCGA-AA-A010-01 8 66631529 66631529 G T PDE7A Nonsense_Mutation p.S482* 0.33 TCGA-AA-A010-01 8 66988974 66988974 G A DNAJC5B Missense_Mutation p.A67T 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-AA-A010-01 8 67422372 67422372 C T C8orf46 Nonsense_Mutation p.R108* 0.34 TCGA-AA-A010-01 8 67504726 67504726 C A MYBL1 Missense_Mutation p.E272D 0.48 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A010-01 8 67509631 67509631 A G MYBL1 Missense_Mutation p.I149T 0.32 deleterious(0) possibly_damaging(0.843) TCGA-AA-A010-01 8 67546723 67546723 G T VCPIP1 3'UTR 0.37 TCGA-AA-A010-01 8 67790882 67790882 T G MCMDC2 Missense_Mutation p.N185K 0.27 tolerated(0.3) benign(0.001) TCGA-AA-A010-01 8 67796185 67796185 C T MCMDC2 Silent p.C343C 0.29 TCGA-AA-A010-01 8 67813526 67813526 G A MCMDC2 Missense_Mutation p.R571K 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A010-01 8 67929882 67929882 T A PPP1R42 Missense_Mutation p.N34I 0.38 tolerated(0.1) possibly_damaging(0.476) TCGA-AA-A010-01 8 6793521 6793521 A C DEFA4 3'UTR 0.35 TCGA-AA-A010-01 8 67986477 67986477 G T CSPP1 Splice_Site p.X33_splice 0.40 TCGA-AA-A010-01 8 68070693 68070693 G T CSPP1 Missense_Mutation p.K746N 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-AA-A010-01 8 68070776 68070776 G T CSPP1 Missense_Mutation p.R774L 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 8 68116980 68116980 C T ARFGEF1 Missense_Mutation p.D1632N 0.31 tolerated(0.14) probably_damaging(1) TCGA-AA-A010-01 8 68179665 68179665 C A ARFGEF1 Nonsense_Mutation p.E529* 0.36 TCGA-AA-A010-01 8 69002890 69002890 G A PREX2 Silent p.E730E 0.30 TCGA-AA-A010-01 8 69351854 69351854 G A C8orf34 Missense_Mutation p.A150T 0.33 deleterious(0.01) probably_damaging(0.944) TCGA-AA-A010-01 8 69621313 69621313 C T C8orf34 Silent p.F442F 0.69 TCGA-AA-A010-01 8 69633610 69633610 A G C8orf34 Missense_Mutation p.T448A 0.39 tolerated(0.12) benign(0.228) TCGA-AA-A010-01 8 70514025 70514025 C T SULF1 Missense_Mutation p.P341L 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 70667685 70667685 G A SLCO5A1 Missense_Mutation p.S411L 0.28 deleterious(0.04) benign(0.009) TCGA-AA-A010-01 8 70744357 70744357 G A SLCO5A1 Silent p.F184F 0.37 TCGA-AA-A010-01 8 71646380 71646380 G T XKR9 Missense_Mutation p.Q281H 0.38 tolerated(0.05) benign(0.056) TCGA-AA-A010-01 8 72156886 72156886 T C EYA1 Silent p.E364E 0.39 TCGA-AA-A010-01 8 72935053 72935053 C A TRPA1 3'UTR 0.40 TCGA-AA-A010-01 8 72945941 72945941 G T TRPA1 Missense_Mutation p.L936M 0.37 deleterious(0.03) probably_damaging(0.969) TCGA-AA-A010-01 8 72958840 72958840 C T TRPA1 Missense_Mutation p.E657K 0.25 tolerated(0.13) possibly_damaging(0.475) TCGA-AA-A010-01 8 72959421 72959421 A C TRPA1 Missense_Mutation p.L643V 0.36 tolerated(0.46) benign(0.001) TCGA-AA-A010-01 8 72968057 72968057 C T TRPA1 Missense_Mutation p.D410N 0.32 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 8 72975037 72975037 C A TRPA1 Silent p.V268V 0.44 TCGA-AA-A010-01 8 72984052 72984052 C T TRPA1 Silent p.K54K 0.33 TCGA-AA-A010-01 8 73848788 73848788 C A KCNB2 Missense_Mutation p.L400M 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 8 74893855 74893855 G T TMEM70 Nonstop_Mutation p.*261Lext*17 0.28 TCGA-AA-A010-01 8 75737530 75737530 C A PI15 Missense_Mutation p.L16I 0.47 tolerated(0.56) unknown(0) TCGA-AA-A010-01 8 75737612 75737612 C T PI15 Missense_Mutation p.A43V 0.19 tolerated(0.61) benign(0.036) TCGA-AA-A010-01 8 7721105 7721105 A C SPAG11A 3'UTR 0.16 TCGA-AA-A010-01 8 77617649 77617649 G T ZFHX4 Missense_Mutation p.E442D 0.45 benign(0.388) TCGA-AA-A010-01 8 77618584 77618584 G A ZFHX4 Missense_Mutation p.G754E 0.30 probably_damaging(0.969) TCGA-AA-A010-01 8 77766064 77766064 C T ZFHX4 Missense_Mutation p.R2303W 0.38 probably_damaging(0.99) TCGA-AA-A010-01 8 77767757 77767757 C A ZFHX4 Missense_Mutation p.S2867Y 0.36 probably_damaging(0.952) TCGA-AA-A010-01 8 77775616 77775616 C A ZFHX4 Silent p.I3222I 0.30 TCGA-AA-A010-01 8 80677780 80677780 A G HEY1 Silent p.H190H 0.47 TCGA-AA-A010-01 8 80915396 80915396 T C MRPS28 Missense_Mutation p.E78G 0.40 deleterious(0.01) possibly_damaging(0.809) TCGA-AA-A010-01 8 80956438 80956438 C T TPD52 Intron 0.36 TCGA-AA-A010-01 8 81889139 81889139 G A PAG1 Silent p.I313I 0.29 TCGA-AA-A010-01 8 82606305 82606305 G A SLC10A5 Silent p.F301F 0.25 TCGA-AA-A010-01 8 82606480 82606480 G A SLC10A5 Missense_Mutation p.T243I 0.31 deleterious(0) possibly_damaging(0.688) TCGA-AA-A010-01 8 8560876 8560876 C T CLDN23 3'UTR 0.32 TCGA-AA-A010-01 8 86053729 86053729 T G LRRCC1 Missense_Mutation p.C985G 0.32 tolerated(0.12) benign(0.053) TCGA-AA-A010-01 8 86089886 86089886 A T E2F5 Missense_Mutation p.K77N 0.18 deleterious(0) benign(0.277) TCGA-AA-A010-01 8 86126720 86126720 G T E2F5 3'UTR 0.29 TCGA-AA-A010-01 8 87076450 87076450 T G PSKH2 Missense_Mutation p.K199T 0.41 deleterious(0) possibly_damaging(0.842) TCGA-AA-A010-01 8 87076457 87076457 C A PSKH2 Nonsense_Mutation p.E197* 0.79 TCGA-AA-A010-01 8 87450835 87450835 G T WWP1 Missense_Mutation p.D591Y 0.32 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 8 8748659 8748659 C T MFHAS1 Missense_Mutation p.R637H 0.30 tolerated(0.14) benign(0.026) TCGA-AA-A010-01 8 87487150 87487150 G T RMDN1 Missense_Mutation p.L265I 0.37 deleterious(0.03) possibly_damaging(0.454) TCGA-AA-A010-01 8 8749392 8749392 C T MFHAS1 Missense_Mutation p.A393T 0.47 tolerated(0.06) probably_damaging(0.996) TCGA-AA-A010-01 8 8750271 8750271 C T MFHAS1 Missense_Mutation p.A100T 0.35 tolerated(0.47) benign(0.006) TCGA-AA-A010-01 8 87588247 87588247 C A CNGB3 Missense_Mutation p.D739Y 0.34 tolerated(0.1) benign(0.003) TCGA-AA-A010-01 8 88298888 88298888 C A CNBD1 Missense_Mutation p.P344H 0.37 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 8 88886083 88886083 G A DCAF4L2 Silent p.F39F 0.35 TCGA-AA-A010-01 8 89081594 89081594 C A MMP16 Intron 0.29 TCGA-AA-A010-01 8 89130940 89130940 T G MMP16 Missense_Mutation p.Q287P 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 8 90775101 90775101 C A RIPK2 Missense_Mutation p.A73D 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 8 90921825 90921825 G T OSGIN2 Missense_Mutation p.E25D 0.29 tolerated_low_confidence(0.22) benign(0.053) TCGA-AA-A010-01 8 90933397 90933397 A C OSGIN2 Silent p.R206R 0.36 TCGA-AA-A010-01 8 92096314 92096314 G T OTUD6B Nonsense_Mutation p.E287* 0.38 TCGA-AA-A010-01 8 92307868 92307868 C T SLC26A7 Silent p.S138S 0.42 TCGA-AA-A010-01 8 92401570 92401570 A C SLC26A7 Missense_Mutation p.E560D 0.42 tolerated(0.13) benign(0.034) TCGA-AA-A010-01 8 92983070 92983070 G A RUNX1T1 Missense_Mutation p.A463V 0.35 deleterious(0) benign(0.217) TCGA-AA-A010-01 8 92998469 92998469 C A RUNX1T1 Nonsense_Mutation p.E399* 0.30 TCGA-AA-A010-01 8 9413400 9413400 G A TNKS 5'Flank 0.37 TCGA-AA-A010-01 8 94745970 94745970 C T RBM12B Missense_Mutation p.R890H 0.28 tolerated(0.06) probably_damaging(0.976) TCGA-AA-A010-01 8 94746849 94746849 C T RBM12B Missense_Mutation p.R597H 0.36 tolerated_low_confidence(0.36) benign(0.005) TCGA-AA-A010-01 8 94747259 94747259 T C RBM12B Silent p.L460L 0.40 TCGA-AA-A010-01 8 94747285 94747285 C A RBM12B Nonsense_Mutation p.E452* 0.41 TCGA-AA-A010-01 8 94747425 94747425 C A RBM12B Missense_Mutation p.R405I 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 8 94936134 94936134 C A PDP1 3'UTR 0.44 TCGA-AA-A010-01 8 94938013 94938013 G T PDP1 3'UTR 0.34 TCGA-AA-A010-01 8 95158395 95158395 C A CDH17 Missense_Mutation p.G643V 0.35 deleterious(0.02) possibly_damaging(0.493) TCGA-AA-A010-01 8 95272623 95272623 G T GEM Missense_Mutation p.P37T 0.26 tolerated(0.13) benign(0.027) TCGA-AA-A010-01 8 95392534 95392534 T G RAD54B Missense_Mutation p.I696L 0.37 tolerated(0.21) benign(0.063) TCGA-AA-A010-01 8 95565655 95565655 C A KIAA1429 Missense_Mutation p.M7I 0.42 tolerated(0.48) benign(0.036) TCGA-AA-A010-01 8 95853794 95853794 G T INTS8 Nonsense_Mutation p.E365* 0.49 TCGA-AA-A010-01 8 95905080 95905080 G T CCNE2 Missense_Mutation p.L95I 0.25 tolerated(0.31) possibly_damaging(0.788) TCGA-AA-A010-01 8 97251798 97251798 G T MTERFD1 Missense_Mutation p.S392Y 0.31 deleterious(0) possibly_damaging(0.893) TCGA-AA-A010-01 8 97270605 97270605 T C MTERFD1 Missense_Mutation p.D105G 0.28 tolerated(0.07) benign(0.027) TCGA-AA-A010-01 8 97620628 97620628 C T SDC2 Silent p.A124A 0.28 TCGA-AA-A010-01 8 97797152 97797152 C T CPQ Silent p.F9F 0.40 TCGA-AA-A010-01 8 98703262 98703262 T C MTDH Silent p.S298S 0.38 TCGA-AA-A010-01 8 98712003 98712003 C A MTDH Missense_Mutation p.S357Y 0.35 deleterious(0.02) possibly_damaging(0.9) TCGA-AA-A010-01 8 99115125 99115125 C T HRSP12 Missense_Mutation p.R120Q 0.35 tolerated(0.23) benign(0.07) TCGA-AA-A010-01 8 99963095 99963095 T G OSR2 Intron 0.25 TCGA-AA-A010-01 9 100128909 100128909 C T CCDC180 Silent p.C1416C 0.30 TCGA-AA-A010-01 9 100128962 100128962 A G CCDC180 Missense_Mutation p.Y1434C 0.51 deleterious(0) possibly_damaging(0.878) TCGA-AA-A010-01 9 100257990 100257990 G A TDRD7 Missense_Mutation p.R1041Q 0.61 deleterious(0) possibly_damaging(0.611) TCGA-AA-A010-01 9 100362072 100362072 G T TMOD1 3'UTR 0.23 TCGA-AA-A010-01 9 100403139 100403139 C T NCBP1 Missense_Mutation p.S33F 0.45 tolerated(0.08) probably_damaging(0.995) TCGA-AA-A010-01 9 100700470 100700470 G T HEMGN 5'UTR 0.17 TCGA-AA-A010-01 9 100849528 100849528 G T TRIM14 3'UTR 0.23 TCGA-AA-A010-01 9 100888881 100888881 T C CORO2A Missense_Mutation p.T466A 0.54 tolerated(0.85) benign(0.03) TCGA-AA-A010-01 9 100919823 100919823 G T CORO2A Missense_Mutation p.F40L 0.31 deleterious(0.02) benign(0.439) TCGA-AA-A010-01 9 101552433 101552433 T C ANKS6 Missense_Mutation p.D272G 0.47 tolerated(0.06) benign(0.005) TCGA-AA-A010-01 9 101749577 101749577 G A COL15A1 Missense_Mutation p.G217D 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 9 101798611 101798611 A G COL15A1 Missense_Mutation p.D781G 0.49 deleterious(0.01) benign(0.175) TCGA-AA-A010-01 9 101800981 101800981 A C COL15A1 Missense_Mutation p.N814T 0.36 deleterious(0.02) possibly_damaging(0.587) TCGA-AA-A010-01 9 101900171 101900171 C T TGFBR1 Missense_Mutation p.A202V 0.37 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 9 101900288 101900288 C T TGFBR1 Missense_Mutation p.S241L 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 101980562 101980562 G T ALG2 Missense_Mutation p.S302Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 103271376 103271376 G T TMEFF1 Missense_Mutation p.Q132H 0.31 deleterious(0.02) benign(0.003) TCGA-AA-A010-01 9 103340510 103340510 G A MURC Missense_Mutation p.A29T 0.25 tolerated(0.19) probably_damaging(0.984) TCGA-AA-A010-01 9 104192139 104192139 G A ALDOB Silent p.I74I 0.57 TCGA-AA-A010-01 9 104309099 104309099 T C RNF20 Intron 0.50 TCGA-AA-A010-01 9 104335720 104335720 G T GRIN3A Silent p.I1028I 0.48 TCGA-AA-A010-01 9 1056140 1056140 C A DMRT2 Intron 0.50 TCGA-AA-A010-01 9 105767611 105767611 A C CYLC2 Missense_Mutation p.E233A 0.52 deleterious(0.01) unknown(0) TCGA-AA-A010-01 9 107289333 107289333 G T OR13C4 Missense_Mutation p.S53Y 0.34 deleterious(0.04) benign(0.003) TCGA-AA-A010-01 9 107367156 107367156 G T OR13C2 Missense_Mutation p.F251L 0.35 deleterious(0.01) benign(0.33) TCGA-AA-A010-01 9 108110697 108110697 T G SLC44A1 Silent p.S155S 0.39 TCGA-AA-A010-01 9 108152179 108152179 T G SLC44A1 3'UTR 0.35 TCGA-AA-A010-01 9 108152325 108152325 A G SLC44A1 3'UTR 0.36 TCGA-AA-A010-01 9 108223830 108223830 A C FSD1L Silent p.T15T 0.41 TCGA-AA-A010-01 9 108230537 108230537 G A FSD1L Missense_Mutation p.D91N 0.30 tolerated(0.07) benign(0.421) TCGA-AA-A010-01 9 108234321 108234321 G A FSD1L Intron 0.32 TCGA-AA-A010-01 9 108275087 108275087 G T FSD1L Splice_Site p.X299_splice 0.32 TCGA-AA-A010-01 9 108397334 108397334 A G FKTN Missense_Mutation p.Y392C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 108425067 108425067 A T TAL2 Missense_Mutation p.Q97L 0.43 tolerated(0.29) benign(0.003) TCGA-AA-A010-01 9 109690770 109690770 G A ZNF462 Missense_Mutation p.R1526H 0.45 probably_damaging(0.999) TCGA-AA-A010-01 9 110081036 110081036 C T RAD23B Missense_Mutation p.T186M 0.36 tolerated(0.21) possibly_damaging(0.699) TCGA-AA-A010-01 9 111617150 111617150 C T ACTL7B Missense_Mutation p.R354H 0.45 deleterious(0.01) probably_damaging(0.92) TCGA-AA-A010-01 9 111617675 111617675 G A ACTL7B Missense_Mutation p.T179M 0.44 deleterious(0) probably_damaging(0.927) TCGA-AA-A010-01 9 111617854 111617854 G A ACTL7B Silent p.I119I 0.38 TCGA-AA-A010-01 9 111625208 111625208 G A ACTL7A Silent p.S202S 0.28 TCGA-AA-A010-01 9 111659550 111659550 C T IKBKAP Silent p.T793T 0.27 TCGA-AA-A010-01 9 111714507 111714507 G A CTNNAL1 Missense_Mutation p.S606F 0.31 deleterious(0) probably_damaging(0.963) TCGA-AA-A010-01 9 111761416 111761416 C T CTNNAL1 Missense_Mutation p.A88T 0.34 tolerated(0.63) possibly_damaging(0.467) TCGA-AA-A010-01 9 112172289 112172289 A C PTPN3 Missense_Mutation p.F523C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 9 112185044 112185044 C A PTPN3 Nonsense_Mutation p.E364* 0.38 TCGA-AA-A010-01 9 112225699 112225699 G A PTPN3 Missense_Mutation p.R6C 0.41 tolerated(0.08) benign(0.21) TCGA-AA-A010-01 9 112687354 112687354 C T PALM2-AKAP2 Missense_Mutation p.T129M 0.36 tolerated(0.12) benign(0.313) TCGA-AA-A010-01 9 112899528 112899528 G A PALM2-AKAP2 Silent p.R568R 0.42 TCGA-AA-A010-01 9 113205970 113205970 C A SVEP1 Missense_Mutation p.K1498N 0.36 benign(0.432) TCGA-AA-A010-01 9 113220826 113220826 G T SVEP1 Missense_Mutation p.F1167L 0.33 possibly_damaging(0.826) TCGA-AA-A010-01 9 113221371 113221371 G T SVEP1 Missense_Mutation p.F1115L 0.39 probably_damaging(0.999) TCGA-AA-A010-01 9 113228204 113228204 G A SVEP1 Missense_Mutation p.S1088L 0.44 benign(0.004) TCGA-AA-A010-01 9 113637592 113637592 G T LPAR1 3'UTR 0.21 TCGA-AA-A010-01 9 113703878 113703878 A G LPAR1 Missense_Mutation p.Y206H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 114141006 114141006 T C KIAA0368 Missense_Mutation p.N1448D 0.38 tolerated(0.2) benign(0.185) TCGA-AA-A010-01 9 114148718 114148718 C A KIAA0368 Nonsense_Mutation p.E1334* 0.49 TCGA-AA-A010-01 9 114304261 114304261 G A ZNF483 Missense_Mutation p.R349H 0.39 tolerated(0.25) possibly_damaging(0.522) TCGA-AA-A010-01 9 114305427 114305427 C T ZNF483 Missense_Mutation p.R738W 0.33 deleterious(0) possibly_damaging(0.689) TCGA-AA-A010-01 9 114337081 114337081 C A PTGR1 Missense_Mutation p.K231N 0.37 tolerated(0.58) benign(0.011) TCGA-AA-A010-01 9 114356527 114356527 A G PTGR1 Missense_Mutation p.F43L 0.36 deleterious(0) benign(0.428) TCGA-AA-A010-01 9 114518729 114518729 G T C9orf84 Missense_Mutation p.F182L 0.50 tolerated(0.34) benign(0.009) TCGA-AA-A010-01 9 115030433 115030433 C T PTBP3 Missense_Mutation p.V117M 0.38 tolerated(0.13) possibly_damaging(0.485) TCGA-AA-A010-01 9 115232726 115232726 A G HSDL2 Missense_Mutation p.T387A 0.34 tolerated(0.23) benign(0.042) TCGA-AA-A010-01 9 115478809 115478809 A G INIP 5'UTR 0.33 TCGA-AA-A010-01 9 115652740 115652740 G T SLC46A2 Silent p.I74I 0.42 TCGA-AA-A010-01 9 115925278 115925278 C A SLC31A2 3'UTR 0.42 TCGA-AA-A010-01 9 116029516 116029516 C T CDC26 3'UTR 0.37 TCGA-AA-A010-01 9 116171980 116171980 G A POLE3 Missense_Mutation p.R61W 0.37 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 116186515 116186515 G T C9orf43 Missense_Mutation p.K242N 0.47 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 9 116187673 116187673 G T C9orf43 Missense_Mutation p.K305N 0.41 deleterious(0.01) benign(0.052) TCGA-AA-A010-01 9 116811321 116811321 T C ZNF618 Missense_Mutation p.V487A 0.40 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 9 116840552 116840552 G A AMBP 5'UTR 0.45 TCGA-AA-A010-01 9 116972007 116972007 G A COL27A1 Missense_Mutation p.R774Q 0.34 unknown(0) TCGA-AA-A010-01 9 117071728 117071728 C A COL27A1 Missense_Mutation p.F1802L 0.35 unknown(0) TCGA-AA-A010-01 9 117071729 117071729 C T COL27A1 Missense_Mutation p.R1803W 0.36 unknown(0) TCGA-AA-A010-01 9 117168734 117168734 C A DFNB31 Missense_Mutation p.D713Y 0.38 deleterious(0.02) benign(0.396) TCGA-AA-A010-01 9 117186618 117186618 G A DFNB31 Missense_Mutation p.A471V 0.40 deleterious(0) possibly_damaging(0.834) TCGA-AA-A010-01 9 117187356 117187356 G A DFNB31 Intron 0.38 TCGA-AA-A010-01 9 117354909 117354909 G T ATP6V1G1 Nonsense_Mutation p.E54* 0.34 TCGA-AA-A010-01 9 117400943 117400943 T C C9orf91 Silent p.C262C 0.33 TCGA-AA-A010-01 9 117552801 117552801 G A TNFSF15 Silent p.N229N 0.35 TCGA-AA-A010-01 9 117808756 117808756 G A TNC Silent p.Y1686Y 0.30 TCGA-AA-A010-01 9 117848860 117848860 G A TNC Missense_Mutation p.R384C 0.38 deleterious(0) possibly_damaging(0.893) TCGA-AA-A010-01 9 118949776 118949776 C T PAPPA Silent p.I253I 0.36 TCGA-AA-A010-01 9 118949846 118949846 G A PAPPA Missense_Mutation p.A277T 0.38 tolerated(0.57) benign(0) TCGA-AA-A010-01 9 118969855 118969855 G T PAPPA Missense_Mutation p.W533C 0.40 deleterious(0) probably_damaging(0.926) TCGA-AA-A010-01 9 119488163 119488163 T A ASTN2 Missense_Mutation p.Q847L 0.39 deleterious(0.01) unknown(0) TCGA-AA-A010-01 9 120474912 120474912 A C TLR4 Missense_Mutation p.E169A 0.39 tolerated(0.27) benign(0.026) TCGA-AA-A010-01 9 120475190 120475190 G T TLR4 Nonsense_Mutation p.E262* 0.29 TCGA-AA-A010-01 9 120475675 120475675 A C TLR4 Missense_Mutation p.Q423H 0.39 tolerated(0.05) probably_damaging(0.911) TCGA-AA-A010-01 9 120476405 120476405 T C TLR4 Missense_Mutation p.Y667H 0.31 tolerated(0.29) benign(0.111) TCGA-AA-A010-01 9 121929550 121929550 G A BRINP1 Missense_Mutation p.R700W 0.40 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 9 123199802 123199802 G A CDK5RAP2 Silent p.Y1242Y 0.32 TCGA-AA-A010-01 9 123201968 123201968 A T CDK5RAP2 Missense_Mutation p.I1144N 0.38 deleterious(0.05) probably_damaging(0.976) TCGA-AA-A010-01 9 123538451 123538451 C A FBXW2 Missense_Mutation p.D247Y 0.34 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 9 123589062 123589062 G A PSMD5 Silent p.F265F 0.39 TCGA-AA-A010-01 9 123758550 123758550 G T C5 Missense_Mutation p.S940Y 0.40 deleterious(0.03) benign(0.379) TCGA-AA-A010-01 9 123850646 123850646 G T CNTRL Missense_Mutation p.K14N 0.37 benign(0.005) TCGA-AA-A010-01 9 123903726 123903726 C A CNTRL Missense_Mutation p.L851I 0.38 probably_damaging(0.998) TCGA-AA-A010-01 9 124737182 124737182 C A TTLL11 Missense_Mutation p.R539I 0.35 deleterious(0) benign(0.349) TCGA-AA-A010-01 9 124751549 124751549 G A TTLL11 Silent p.I488I 0.34 TCGA-AA-A010-01 9 124932010 124932010 G T MORN5 Missense_Mutation p.E94D 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 125141147 125141147 G A PTGS1 Missense_Mutation p.R149H 0.36 deleterious(0) probably_damaging(0.974) TCGA-AA-A010-01 9 125239278 125239278 C T OR1J1 Missense_Mutation p.A310T 0.16 tolerated_low_confidence(0.43) benign(0.005) TCGA-AA-A010-01 9 125289270 125289270 G T OR1N1 Missense_Mutation p.F101L 0.34 deleterious(0.02) benign(0.007) TCGA-AA-A010-01 9 125315454 125315454 A C OR1N2 Missense_Mutation p.E2D 0.34 tolerated_low_confidence(0.09) benign(0.217) TCGA-AA-A010-01 9 125316108 125316108 C A OR1N2 Silent p.G220G 0.33 TCGA-AA-A010-01 9 125330177 125330177 A G OR1L8 Missense_Mutation p.F194L 0.34 tolerated(0.28) benign(0.03) TCGA-AA-A010-01 9 125438291 125438291 G T OR1L3 Missense_Mutation p.D295Y 0.44 deleterious(0) probably_damaging(0.966) TCGA-AA-A010-01 9 125562440 125562440 C T OR1K1 Silent p.F13F 0.41 TCGA-AA-A010-01 9 125835910 125835910 T C RABGAP1 Missense_Mutation p.F688S 0.42 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 9 125852118 125852118 G A RABGAP1 Missense_Mutation p.E836K 0.46 deleterious(0.05) possibly_damaging(0.833) TCGA-AA-A010-01 9 125861055 125861055 C A RABGAP1 Missense_Mutation p.S932Y 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-AA-A010-01 9 126133054 126133054 G A CRB2 Silent p.A574A 0.36 TCGA-AA-A010-01 9 127218979 127218979 C T GPR144 Missense_Mutation p.R510W 0.32 deleterious(0.02) benign(0.001) TCGA-AA-A010-01 9 127284949 127284949 G A NR6A1 3'UTR 0.50 TCGA-AA-A010-01 9 127915929 127915929 T G PPP6C Missense_Mutation p.E221D 0.41 deleterious(0.01) possibly_damaging(0.841) TCGA-AA-A010-01 9 128099688 128099688 C T GAPVD1 Nonsense_Mutation p.R926* 0.30 TCGA-AA-A010-01 9 128201015 128201015 G A MAPKAP1 3'UTR 0.31 TCGA-AA-A010-01 9 128510865 128510865 G A PBX3 Silent p.A79A 0.38 TCGA-AA-A010-01 9 128725382 128725382 T G PBX3 Splice_Site p.X404_splice 0.36 TCGA-AA-A010-01 9 128728186 128728186 C T PBX3 Missense_Mutation p.S430L 0.33 deleterious(0) probably_damaging(0.95) TCGA-AA-A010-01 9 129597952 129597952 C T ZBTB43 3'UTR 0.30 TCGA-AA-A010-01 9 129599880 129599880 C A ZBTB43 3'UTR 0.41 TCGA-AA-A010-01 9 129600064 129600064 C A ZBTB43 3'UTR 0.41 TCGA-AA-A010-01 9 129600205 129600205 C T ZBTB43 3'UTR 0.38 TCGA-AA-A010-01 9 129600307 129600307 T G ZBTB43 3'UTR 0.39 TCGA-AA-A010-01 9 129645104 129645104 C A ZBTB34 3'UTR 0.36 TCGA-AA-A010-01 9 129647991 129647991 G T ZBTB34 3'UTR 0.28 TCGA-AA-A010-01 9 129853967 129853967 C A ANGPTL2 Missense_Mutation p.D422Y 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 9 130106536 130106536 T G GARNL3 Missense_Mutation p.F425C 0.41 deleterious(0) possibly_damaging(0.907) TCGA-AA-A010-01 9 130280169 130280169 C T FAM129B Missense_Mutation p.R214H 0.41 tolerated(0.08) probably_damaging(0.992) TCGA-AA-A010-01 9 130289525 130289525 C T FAM129B Missense_Mutation p.R88H 0.35 deleterious(0.02) possibly_damaging(0.546) TCGA-AA-A010-01 9 130478549 130478549 C T PTRH1 5'UTR 0.26 TCGA-AA-A010-01 9 130493408 130493408 C A TTC16 Missense_Mutation p.S782R 0.34 tolerated(0.1) benign(0.051) TCGA-AA-A010-01 9 130495446 130495446 C T TOR2A Intron 0.25 TCGA-AA-A010-01 9 130513541 130513541 C A SH2D3C Missense_Mutation p.E198D 0.34 tolerated(0.05) probably_damaging(0.997) TCGA-AA-A010-01 9 130587218 130587218 C A ENG Missense_Mutation p.E284D 0.44 tolerated(0.37) benign(0.003) TCGA-AA-A010-01 9 130656910 130656910 T C ST6GALNAC6 Missense_Mutation p.S60G 0.33 benign(0.058) TCGA-AA-A010-01 9 130684341 130684341 G A PIP5KL1 Silent p.L324L 0.34 TCGA-AA-A010-01 9 130860854 130860854 T C SLC25A25 Intron 0.30 TCGA-AA-A010-01 9 130860980 130860980 C A SLC25A25 Intron 0.46 TCGA-AA-A010-01 9 130980892 130980892 G T DNM1 Missense_Mutation p.K89N 0.35 deleterious(0) benign(0.36) TCGA-AA-A010-01 9 131010211 131010211 G T DNM1 Missense_Mutation p.E634D 0.40 tolerated(0.48) benign(0.001) TCGA-AA-A010-01 9 131190696 131190696 A G CERCAM Silent p.A294A 0.32 TCGA-AA-A010-01 9 131346768 131346768 C T SPTAN1 Nonsense_Mutation p.R801* 0.36 TCGA-AA-A010-01 9 131394744 131394744 G T SPTAN1 Nonsense_Mutation p.E2332* 0.33 TCGA-AA-A010-01 9 131516205 131516205 G A ZER1 Silent p.F64F 0.43 TCGA-AA-A010-01 9 131591418 131591418 C A C9orf114 Missense_Mutation p.R18M 0.36 deleterious(0.01) benign(0.188) TCGA-AA-A010-01 9 131604965 131604965 C A CCBL1 Missense_Mutation p.D57Y 0.38 deleterious(0.02) possibly_damaging(0.86) TCGA-AA-A010-01 9 131755874 131755874 G A NUP188 Missense_Mutation p.R973Q 0.30 tolerated(0.56) benign(0.001) TCGA-AA-A010-01 9 13176160 13176160 G A MPDZ Missense_Mutation p.S969F 0.26 tolerated(0.15) benign(0.005) TCGA-AA-A010-01 9 131904747 131904747 G T PPP2R4 Missense_Mutation p.E270D 0.40 deleterious(0) probably_damaging(0.913) TCGA-AA-A010-01 9 132377823 132377823 G A C9orf50 Nonsense_Mutation p.R274* 0.39 TCGA-AA-A010-01 9 132483019 132483019 G T PRRX2 Missense_Mutation p.D198Y 0.36 deleterious(0) possibly_damaging(0.656) TCGA-AA-A010-01 9 132576387 132576387 C T TOR1A Missense_Mutation p.R288Q 0.34 tolerated(0.18) probably_damaging(0.996) TCGA-AA-A010-01 9 132982038 132982038 C T NCS1 Missense_Mutation p.A88V 0.38 deleterious(0.03) probably_damaging(0.996) TCGA-AA-A010-01 9 133499010 133499010 G T FUBP3 Missense_Mutation p.S296I 0.26 deleterious(0.04) possibly_damaging(0.744) TCGA-AA-A010-01 9 133799212 133799212 G A FIBCD1 Silent p.G256G 0.36 TCGA-AA-A010-01 9 133901730 133901730 C T LAMC3 Silent p.S144S 0.39 TCGA-AA-A010-01 9 134049503 134049503 C T NUP214 Silent p.S985S 0.39 TCGA-AA-A010-01 9 134064461 134064461 A G NUP214 Missense_Mutation p.K1173E 0.46 possibly_damaging(0.908) TCGA-AA-A010-01 9 134165375 134165375 C T PPAPDC3 5'UTR 0.69 TCGA-AA-A010-01 9 134396773 134396773 C T POMT1 Missense_Mutation p.S602L 0.36 tolerated(0.09) probably_damaging(0.998) TCGA-AA-A010-01 9 135140021 135140021 T C SETX Missense_Mutation p.I2547V 0.39 tolerated(0.83) benign(0.001) TCGA-AA-A010-01 9 135173631 135173631 C A SETX Nonsense_Mutation p.E1873* 0.36 TCGA-AA-A010-01 9 135202897 135202897 C T SETX Missense_Mutation p.R1363Q 0.41 tolerated(0.9) benign(0) TCGA-AA-A010-01 9 135203396 135203396 C T SETX Missense_Mutation p.D1197N 0.37 tolerated(0.18) benign(0.025) TCGA-AA-A010-01 9 135204422 135204422 C A SETX Nonsense_Mutation p.E855* 0.34 TCGA-AA-A010-01 9 135413086 135413086 A T C9orf171 Missense_Mutation p.K244M 0.35 deleterious(0) probably_damaging(0.954) TCGA-AA-A010-01 9 135464800 135464800 G T BARHL1 Missense_Mutation p.R292I 0.35 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 9 135522411 135522411 A G DDX31 Silent p.D439D 0.40 TCGA-AA-A010-01 9 135759359 135759359 C T C9orf9 Missense_Mutation p.R9C 0.36 deleterious(0.04) benign(0.06) TCGA-AA-A010-01 9 136199150 136199150 G A SURF6 Missense_Mutation p.A214V 0.39 tolerated(0.48) benign(0.006) TCGA-AA-A010-01 9 136270025 136270025 C A C9orf96 Silent p.G615G 0.46 TCGA-AA-A010-01 9 136298583 136298583 G A ADAMTS13 Missense_Mutation p.R393Q 0.38 tolerated(0.3) benign(0.003) TCGA-AA-A010-01 9 136333777 136333777 G T CACFD1 Missense_Mutation p.G216W 0.29 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 9 136341398 136341398 G T SLC2A6 Missense_Mutation p.L175I 0.38 tolerated(0.43) benign(0.02) TCGA-AA-A010-01 9 136385400 136385400 G A TMEM8C Missense_Mutation p.A49V 0.37 deleterious(0.02) benign(0.052) TCGA-AA-A010-01 9 136501764 136501764 G A DBH Missense_Mutation p.D91N 0.38 tolerated(0.09) probably_damaging(0.985) TCGA-AA-A010-01 9 136504980 136504980 G T DBH Missense_Mutation p.D118Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 136509395 136509395 G T DBH Missense_Mutation p.R326I 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A010-01 9 137591817 137591817 G A COL5A1 Missense_Mutation p.A114T 0.40 probably_damaging(0.994) TCGA-AA-A010-01 9 137717744 137717744 C T COL5A1 Silent p.S1687S 0.43 TCGA-AA-A010-01 9 137801879 137801879 G A FCN1 Missense_Mutation p.T249M 0.41 tolerated(0.08) benign(0.078) TCGA-AA-A010-01 9 138011950 138011950 T C OLFM1 Missense_Mutation p.Y444H 0.36 deleterious(0.02) benign(0.002) TCGA-AA-A010-01 9 138235953 138235953 A G C9orf62 Silent p.R53R 0.29 TCGA-AA-A010-01 9 138517929 138517929 G T GLT6D1 Silent p.V81V 0.37 TCGA-AA-A010-01 9 138556631 138556631 C A LCN9 Nonsense_Mutation p.Y99* 0.39 TCGA-AA-A010-01 9 138585700 138585700 C A SOHLH1 Intron 0.44 TCGA-AA-A010-01 9 138702971 138702971 C T CAMSAP1 3'UTR 0.32 TCGA-AA-A010-01 9 138703329 138703329 C A CAMSAP1 Missense_Mutation p.K1545N 0.40 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 9 138774857 138774857 C T CAMSAP1 Silent p.P76P 0.33 TCGA-AA-A010-01 9 139008472 139008472 C T C9orf69 Missense_Mutation p.R92H 0.29 tolerated(0.22) benign(0) TCGA-AA-A010-01 9 139272264 139272264 G A SNAPC4 Missense_Mutation p.R1339W 0.42 deleterious(0.02) benign(0.183) TCGA-AA-A010-01 9 139281957 139281957 G A SNAPC4 Silent p.S435S 0.34 TCGA-AA-A010-01 9 139304548 139304548 C A SDCCAG3 Missense_Mutation p.D72Y 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.704) TCGA-AA-A010-01 9 139343152 139343152 G T SEC16A Intron 0.36 TCGA-AA-A010-01 9 139369093 139369093 C T SEC16A Missense_Mutation p.G992E 0.33 tolerated(0.21) probably_damaging(1) TCGA-AA-A010-01 9 139369229 139369229 C T SEC16A Missense_Mutation p.A947T 0.38 tolerated(0.13) possibly_damaging(0.572) TCGA-AA-A010-01 9 139379292 139379292 T A C9orf163 Missense_Mutation p.I131N 0.34 deleterious_low_confidence(0.01) benign(0) TCGA-AA-A010-01 9 139393591 139393591 C T NOTCH1 Missense_Mutation p.A2019T 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 9 139617394 139617394 C A FAM69B Intron 0.09 TCGA-AA-A010-01 9 139650882 139650882 G T LCN8 Intron 0.40 TCGA-AA-A010-01 9 139701077 139701077 G A CCDC183 Missense_Mutation p.D411N 0.40 tolerated(0.09) possibly_damaging(0.469) TCGA-AA-A010-01 9 139926563 139926563 C A C9orf139 5'UTR 0.37 TCGA-AA-A010-01 9 140006327 140006327 C T DPP7 Missense_Mutation p.G402D 0.30 tolerated(0.88) benign(0.004) TCGA-AA-A010-01 9 140119581 140119581 C T C9orf169 5'Flank 0.52 TCGA-AA-A010-01 9 140120100 140120100 G T C9orf169 Missense_Mutation p.K9N 0.41 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-AA-A010-01 9 140356020 140356020 C T PNPLA7 Missense_Mutation p.R1270H 0.32 deleterious(0.01) probably_damaging(0.91) TCGA-AA-A010-01 9 140374875 140374875 G T PNPLA7 Silent p.I823I 0.34 TCGA-AA-A010-01 9 140508126 140508126 G A ARRDC1 Missense_Mutation p.A114T 0.38 tolerated(0.96) benign(0.002) TCGA-AA-A010-01 9 140852063 140852063 G A CACNA1B Silent p.A419A 0.36 TCGA-AA-A010-01 9 140852077 140852077 G T CACNA1B Missense_Mutation p.S424I 0.38 deleterious(0.01) benign(0.001) TCGA-AA-A010-01 9 140997167 140997167 C T CACNA1B Missense_Mutation p.R1743C 0.31 deleterious(0) probably_damaging(0.973) TCGA-AA-A010-01 9 141014626 141014626 G T CACNA1B Missense_Mutation p.D2014Y 0.43 deleterious(0) probably_damaging(0.971) TCGA-AA-A010-01 9 14776171 14776171 C T FREM1 Silent p.E1491E 0.30 TCGA-AA-A010-01 9 14841511 14841511 G T FREM1 Silent p.I605I 0.52 TCGA-AA-A010-01 9 15307152 15307152 A C TTC39B Missense_Mutation p.F57C 0.40 deleterious_low_confidence(0.02) benign(0.138) TCGA-AA-A010-01 9 15471248 15471248 A C PSIP1 Intron 0.32 TCGA-AA-A010-01 9 15564035 15564035 G T CCDC171 5'UTR 0.30 TCGA-AA-A010-01 9 15571671 15571671 G T CCDC171 Nonsense_Mutation p.E31* 0.74 TCGA-AA-A010-01 9 15846717 15846717 G T CCDC171 Missense_Mutation p.K1095N 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 16419048 16419048 C T BNC2 Missense_Mutation p.R1080Q 0.35 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 9 17135119 17135119 G A CNTLN Missense_Mutation p.G19D 0.43 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-AA-A010-01 9 17236537 17236537 A G CNTLN Missense_Mutation p.Q267R 0.42 deleterious(0.03) benign(0.011) TCGA-AA-A010-01 9 17366696 17366696 T C CNTLN Silent p.C656C 0.38 TCGA-AA-A010-01 9 17502666 17502666 C T CNTLN 3'UTR 0.51 TCGA-AA-A010-01 9 17502769 17502769 C A CNTLN 3'UTR 0.29 TCGA-AA-A010-01 9 18753445 18753445 C T ADAMTSL1 Missense_Mutation p.T719M 0.35 tolerated(0.06) benign(0.042) TCGA-AA-A010-01 9 18795428 18795428 C A ADAMTSL1 Silent p.I1237I 0.38 TCGA-AA-A010-01 9 18826269 18826269 T G ADAMTSL1 Intron 0.50 TCGA-AA-A010-01 9 19786464 19786464 G A SLC24A2 Missense_Mutation p.A134V 0.43 tolerated(0.09) benign(0.326) TCGA-AA-A010-01 9 2032958 2032958 G A SMARCA2 Missense_Mutation p.D78N 0.43 probably_damaging(0.986) TCGA-AA-A010-01 9 21187469 21187469 G T IFNA4 Missense_Mutation p.S21Y 0.34 deleterious(0.01) benign(0.263) TCGA-AA-A010-01 9 21201841 21201841 A C IFNA7 Missense_Mutation p.F108L 0.30 tolerated(1) benign(0.055) TCGA-AA-A010-01 9 21217155 21217155 G T IFNA16 Missense_Mutation p.F50L 0.39 tolerated(0.56) benign(0.011) TCGA-AA-A010-01 9 2123819 2123819 A G SMARCA2 Missense_Mutation p.D1288G 0.44 possibly_damaging(0.539) TCGA-AA-A010-01 9 21333218 21333218 G A KLHL9 Silent p.I547I 0.41 TCGA-AA-A010-01 9 21334512 21334512 G T KLHL9 Missense_Mutation p.S116Y 0.30 tolerated(1) benign(0.105) TCGA-AA-A010-01 9 21350605 21350605 C A IFNA6 Missense_Mutation p.K94N 0.38 tolerated(0.15) benign(0.026) TCGA-AA-A010-01 9 21350750 21350750 C A IFNA6 Missense_Mutation p.R46I 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-AA-A010-01 9 21410174 21410174 G T IFNA8 3'UTR 0.42 TCGA-AA-A010-01 9 21482044 21482044 C A IFNE 5'UTR 0.40 TCGA-AA-A010-01 9 22451144 22451144 C A DMRTA1 Nonsense_Mutation p.S250* 0.21 TCGA-AA-A010-01 9 26906075 26906075 C A PLAA Splice_Site p.X608_splice 0.37 TCGA-AA-A010-01 9 27109607 27109607 T G TEK Missense_Mutation p.L7V 0.41 deleterious(0.02) unknown(0) TCGA-AA-A010-01 9 2718278 2718278 G A KCNV2 Missense_Mutation p.R180H 0.37 tolerated(0.07) benign(0.006) TCGA-AA-A010-01 9 27359143 27359143 G A MOB3B Silent p.F170F 0.37 TCGA-AA-A010-01 9 27948696 27948696 G T LINGO2 3'UTR 0.43 TCGA-AA-A010-01 9 27949138 27949138 G A LINGO2 Missense_Mutation p.A511V 0.36 tolerated(0.28) benign(0.062) TCGA-AA-A010-01 9 2829936 2829936 C T KIAA0020 Silent p.Q230Q 0.34 TCGA-AA-A010-01 9 32405519 32405519 C T ACO1 Silent p.F5F 0.31 TCGA-AA-A010-01 9 32481340 32481340 G A DDX58 Missense_Mutation p.R546W 0.39 tolerated(0.12) benign(0.146) TCGA-AA-A010-01 9 32542375 32542375 G A TOPORS Silent p.Y716Y 0.32 TCGA-AA-A010-01 9 32630502 32630502 G T TAF1L Silent p.V1692V 0.35 TCGA-AA-A010-01 9 32633489 32633489 G T TAF1L Missense_Mutation p.L697I 0.38 tolerated(0.39) benign(0.401) TCGA-AA-A010-01 9 32634481 32634481 C T TAF1L Missense_Mutation p.R366Q 0.37 tolerated(1) benign(0.001) TCGA-AA-A010-01 9 32784891 32784891 C A TMEM215 3'UTR 0.41 TCGA-AA-A010-01 9 33030555 33030555 T C DNAJA1 Missense_Mutation p.M178T 0.34 tolerated(0.62) benign(0.077) TCGA-AA-A010-01 9 33047169 33047169 C A SMU1 3'UTR 0.39 TCGA-AA-A010-01 9 33113458 33113458 C T B4GALT1 Silent p.P397P 0.42 TCGA-AA-A010-01 9 33113815 33113815 T C B4GALT1 Missense_Mutation p.I341V 0.43 tolerated(0.09) possibly_damaging(0.609) TCGA-AA-A010-01 9 33120551 33120551 T G B4GALT1 Missense_Mutation p.E234D 0.42 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 33385687 33385687 T G AQP7 Missense_Mutation p.I235L 0.28 tolerated(0.89) benign(0.012) TCGA-AA-A010-01 9 33675269 33675269 T A PTENP1 RNA 0.36 TCGA-AA-A010-01 9 33675745 33675745 C A PTENP1 RNA 0.36 TCGA-AA-A010-01 9 34489430 34489430 G A DNAI1 Missense_Mutation p.R124H 0.26 tolerated(0.07) benign(0.046) TCGA-AA-A010-01 9 34500801 34500801 A G DNAI1 Missense_Mutation p.D328G 0.30 deleterious(0) possibly_damaging(0.638) TCGA-AA-A010-01 9 34513116 34513116 G A DNAI1 Missense_Mutation p.G499D 0.38 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 9 34660657 34660657 G T IL11RA Intron 0.42 TCGA-AA-A010-01 9 34709994 34709994 T C CCL21 Intron 0.48 TCGA-AA-A010-01 9 34723440 34723440 G A FAM205A Missense_Mutation p.T1266M 0.40 tolerated(0.05) probably_damaging(0.994) TCGA-AA-A010-01 9 34725845 34725845 G T FAM205A Silent p.P464P 0.35 TCGA-AA-A010-01 9 34728038 34728038 G T FAM205A Missense_Mutation p.L78M 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A010-01 9 34832999 34832999 G A FAM205B RNA 0.27 TCGA-AA-A010-01 9 34834444 34834444 G T FAM205B RNA 0.19 TCGA-AA-A010-01 9 35044145 35044145 C T C9orf131 Missense_Mutation p.L507F 0.41 tolerated(0.17) probably_damaging(0.999) TCGA-AA-A010-01 9 35092699 35092699 C T PIGO Silent p.Q395Q 0.42 TCGA-AA-A010-01 9 35547735 35547735 C T RUSC2 Missense_Mutation p.S406F 0.41 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 9 35660523 35660523 A G CCDC107 Intron 0.33 TCGA-AA-A010-01 9 35681988 35681988 G T TPM2 3'Flank 0.31 TCGA-AA-A010-01 9 35684535 35684535 C A TPM2 Nonsense_Mutation p.E218* 0.24 TCGA-AA-A010-01 9 35685749 35685749 C T TPM2 Missense_Mutation p.R90H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 35689809 35689809 G A TPM2 Silent p.D2D 0.35 TCGA-AA-A010-01 9 35793956 35793956 G T NPR2 Missense_Mutation p.E243D 0.39 tolerated(0.49) benign(0.02) TCGA-AA-A010-01 9 35801725 35801725 C A NPR2 Missense_Mutation p.H508N 0.33 tolerated(0.31) benign(0.119) TCGA-AA-A010-01 9 35810915 35810915 T C SPAG8 Missense_Mutation p.Y335C 0.39 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 9 35957817 35957817 G T OR2S2 Silent p.I93I 0.46 TCGA-AA-A010-01 9 36118832 36118832 C T RECK Missense_Mutation p.R778C 0.36 deleterious(0.02) possibly_damaging(0.873) TCGA-AA-A010-01 9 36121661 36121661 C T RECK Silent p.V890V 0.30 TCGA-AA-A010-01 9 36357936 36357936 G T RNF38 Missense_Mutation p.H192N 0.23 deleterious_low_confidence(0) benign(0.101) TCGA-AA-A010-01 9 37020769 37020769 C A PAX5 Missense_Mutation p.V26F 0.43 deleterious(0) probably_damaging(0.987) TCGA-AA-A010-01 9 37126459 37126459 G T ZCCHC7 Missense_Mutation p.D44Y 0.37 deleterious(0.01) probably_damaging(0.935) TCGA-AA-A010-01 9 371430 371430 C A DOCK8 Missense_Mutation p.S624Y 0.08 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 9 37186820 37186820 G T ZCCHC7 Intron 0.34 TCGA-AA-A010-01 9 37516074 37516074 C A FBXO10 Missense_Mutation p.K841N 0.35 tolerated(0.13) benign(0.112) TCGA-AA-A010-01 9 377067 377067 G A DOCK8 Missense_Mutation p.E766K 0.40 deleterious(0) probably_damaging(0.92) TCGA-AA-A010-01 9 37746408 37746408 G T FRMPD1 Missense_Mutation p.S1460I 0.41 deleterious(0.02) probably_damaging(0.972) TCGA-AA-A010-01 9 37746645 37746645 A C FRMPD1 Missense_Mutation p.K1539T 0.33 deleterious(0.01) possibly_damaging(0.886) TCGA-AA-A010-01 9 37763707 37763707 G T TRMT10B Missense_Mutation p.R126I 0.41 deleterious(0) benign(0.206) TCGA-AA-A010-01 9 38395884 38395884 G A ALDH1B1 Missense_Mutation p.D47N 0.37 tolerated(0.31) benign(0.002) TCGA-AA-A010-01 9 38396461 38396461 C T ALDH1B1 Missense_Mutation p.T239M 0.48 deleterious(0) possibly_damaging(0.583) TCGA-AA-A010-01 9 38396875 38396875 G A ALDH1B1 Missense_Mutation p.G377D 0.41 deleterious(0.01) probably_damaging(0.931) TCGA-AA-A010-01 9 38398032 38398032 C A ALDH1B1 3'UTR 0.36 TCGA-AA-A010-01 9 38398241 38398241 A G ALDH1B1 3'UTR 0.36 TCGA-AA-A010-01 9 38578073 38578073 G A ANKRD18A Missense_Mutation p.L774F 0.38 deleterious(0) probably_damaging(0.969) TCGA-AA-A010-01 9 38621217 38621217 G A ANKRD18A 5'Flank 0.38 TCGA-AA-A010-01 9 39109178 39109178 G A CNTNAP3 Missense_Mutation p.P782S 0.36 tolerated(0.06) probably_damaging(0.959) TCGA-AA-A010-01 9 39140580 39140580 A C CNTNAP3 Silent p.L604L 0.33 TCGA-AA-A010-01 9 40773143 40773143 T C ZNF658 Missense_Mutation p.E711G 0.40 deleterious(0) benign(0.395) TCGA-AA-A010-01 9 40774705 40774705 T C ZNF658 Silent p.E190E 0.36 TCGA-AA-A010-01 9 4117826 4117826 C T GLIS3 Missense_Mutation p.R551H 0.32 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 9 428479 428479 C T DOCK8 Missense_Mutation p.R1486C 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 43624988 43624988 C A SPATA31A6 Missense_Mutation p.Q1233H 0.62 tolerated(0.06) benign(0.106) TCGA-AA-A010-01 9 4564401 4564401 C T SLC1A1 Missense_Mutation p.A128V 0.32 tolerated(0.38) benign(0.008) TCGA-AA-A010-01 9 4566090 4566090 G A SLC1A1 Splice_Site p.X161_splice 0.48 TCGA-AA-A010-01 9 4576583 4576583 C A SLC1A1 Missense_Mutation p.P338H 0.37 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 9 4662818 4662818 T C PPAPDC2 Missense_Mutation p.L148P 0.37 tolerated(0.13) possibly_damaging(0.548) TCGA-AA-A010-01 9 4662968 4662968 A G PPAPDC2 Missense_Mutation p.D198G 0.41 tolerated(0.35) probably_damaging(0.997) TCGA-AA-A010-01 9 4719220 4719220 A C AK3 Missense_Mutation p.V120G 0.36 deleterious(0) probably_damaging(0.929) TCGA-AA-A010-01 9 4849456 4849456 G A RCL1 Missense_Mutation p.V293I 0.30 tolerated(0.21) benign(0.177) TCGA-AA-A010-01 9 5064982 5064982 G T JAK2 Nonsense_Mutation p.E386* 0.34 TCGA-AA-A010-01 9 5089770 5089770 G T JAK2 Nonsense_Mutation p.E890* 0.44 TCGA-AA-A010-01 9 5163941 5163942 - T INSL6 Frame_Shift_Ins p.R205Kfs*7 0.38 TCGA-AA-A010-01 9 5164170 5164170 T G INSL6 Silent p.R129R 0.35 TCGA-AA-A010-01 9 5300394 5300394 A G RLN2 Missense_Mutation p.S88P 0.28 deleterious(0.02) possibly_damaging(0.679) TCGA-AA-A010-01 9 5825132 5825132 A G ERMP1 Missense_Mutation p.V243A 0.36 deleterious(0) benign(0.37) TCGA-AA-A010-01 9 5921788 5921788 G T KIAA2026 Missense_Mutation p.S1403Y 0.32 deleterious(0) probably_damaging(0.951) TCGA-AA-A010-01 9 6250494 6250494 G T IL33 Nonsense_Mutation p.E38* 0.40 TCGA-AA-A010-01 9 6328677 6328677 G A TPD52L3 Missense_Mutation p.E28K 0.33 deleterious(0.04) benign(0.085) TCGA-AA-A010-01 9 6587248 6587248 G T GLDC Silent p.P581P 0.40 TCGA-AA-A010-01 9 66553621 66553621 G A RP11-262H14.3 RNA 0.09 TCGA-AA-A010-01 9 67968467 67968467 G A ANKRD20A1 Missense_Mutation p.D676N 0.17 tolerated(0.24) possibly_damaging(0.811) TCGA-AA-A010-01 9 69200082 69200082 A G FOXD4L6 3'UTR 0.32 TCGA-AA-A010-01 9 69423587 69423587 G T ANKRD20A4 Missense_Mutation p.R628I 0.12 deleterious(0) possibly_damaging(0.903) TCGA-AA-A010-01 9 70177111 70177111 C T FOXD4L5 Silent p.A291A 0.19 TCGA-AA-A010-01 9 712443 712443 C T KANK1 Silent p.V559V 0.39 TCGA-AA-A010-01 9 71396517 71396517 G T FAM122A 3'UTR 0.31 TCGA-AA-A010-01 9 71992394 71992394 G A FAM189A2 Splice_Site p.X120_splice 0.35 TCGA-AA-A010-01 9 72071175 72071175 G A APBA1 Silent p.F592F 0.30 TCGA-AA-A010-01 9 72349142 72349142 T G PTAR1 Missense_Mutation p.N118H 0.48 tolerated(0.07) benign(0.396) TCGA-AA-A010-01 9 72501769 72501769 G A C9orf135 Silent p.T155T 0.46 TCGA-AA-A010-01 9 72879294 72879294 C T SMC5 Missense_Mutation p.S87L 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 9 72965072 72965072 C T SMC5 Nonsense_Mutation p.R978* 0.34 TCGA-AA-A010-01 9 73152213 73152213 G A TRPM3 Silent p.I1260I 0.41 TCGA-AA-A010-01 9 73235128 73235128 G T TRPM3 Missense_Mutation p.L653M 0.46 tolerated(0.3) probably_damaging(0.999) TCGA-AA-A010-01 9 74315727 74315727 G A TMEM2 Nonsense_Mutation p.R1070* 0.35 TCGA-AA-A010-01 9 74315741 74315741 C T TMEM2 Splice_Site p.X1065_splice 0.33 TCGA-AA-A010-01 9 74319653 74319653 T C TMEM2 Missense_Mutation p.N1018D 0.43 deleterious(0.02) benign(0.009) TCGA-AA-A010-01 9 74345163 74345163 C A TMEM2 Missense_Mutation p.D594Y 0.39 deleterious(0) possibly_damaging(0.806) TCGA-AA-A010-01 9 74360330 74360330 C A TMEM2 Missense_Mutation p.S213I 0.43 tolerated(0.12) benign(0.051) TCGA-AA-A010-01 9 74970772 74970772 G T ZFAND5 3'UTR 0.26 TCGA-AA-A010-01 9 75526929 75526929 A G ALDH1A1 Missense_Mutation p.V382A 0.47 deleterious(0) benign(0.202) TCGA-AA-A010-01 9 77280434 77280434 G C RORB Missense_Mutation p.C308S 0.33 tolerated(0.36) benign(0.257) TCGA-AA-A010-01 9 77457135 77457135 C A TRPM6 Missense_Mutation p.D93Y 0.37 deleterious(0) possibly_damaging(0.813) TCGA-AA-A010-01 9 77613612 77613612 C T C9orf41 Missense_Mutation p.R271Q 0.41 tolerated(0.46) benign(0.126) TCGA-AA-A010-01 9 78710945 78710945 C A PCSK5 Missense_Mutation p.P345H 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 9 79118164 79118164 C T GCNT1 Silent p.F289F 0.41 TCGA-AA-A010-01 9 79119837 79119837 T G GCNT1 3'UTR 0.48 TCGA-AA-A010-01 9 79121539 79121539 T C GCNT1 3'UTR 0.45 TCGA-AA-A010-01 9 79320252 79320252 G A PRUNE2 Missense_Mutation p.T2313M 0.39 deleterious(0.04) probably_damaging(0.988) TCGA-AA-A010-01 9 79321099 79321099 G A PRUNE2 Missense_Mutation p.P2031S 0.33 tolerated(1) benign(0) TCGA-AA-A010-01 9 79325627 79325627 G T PRUNE2 Missense_Mutation p.F521L 0.42 deleterious(0.01) possibly_damaging(0.524) TCGA-AA-A010-01 9 79820958 79820958 A C VPS13A Missense_Mutation p.K116N 0.38 deleterious(0.05) benign(0.021) TCGA-AA-A010-01 9 79829248 79829248 G A VPS13A Missense_Mutation p.D234N 0.35 tolerated(0.56) benign(0) TCGA-AA-A010-01 9 79867194 79867194 G T VPS13A Missense_Mutation p.Q738H 0.35 tolerated(0.54) benign(0.046) TCGA-AA-A010-01 9 79910471 79910471 A C VPS13A Missense_Mutation p.N1174T 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 9 79929448 79929448 T G VPS13A Missense_Mutation p.L1427R 0.38 deleterious(0) probably_damaging(0.992) TCGA-AA-A010-01 9 80412494 80412494 G A GNAQ Nonsense_Mutation p.R183* 0.51 TCGA-AA-A010-01 9 80430605 80430605 A C GNAQ Missense_Mutation p.L135V 0.34 tolerated(0.06) possibly_damaging(0.89) TCGA-AA-A010-01 9 80851438 80851438 C T CEP78 Silent p.L58L 0.45 TCGA-AA-A010-01 9 80879187 80879187 C A CEP78 Missense_Mutation p.S528Y 0.39 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 9 80881481 80881481 C T CEP78 Missense_Mutation p.R658W 0.37 tolerated_low_confidence(0.08) benign(0.292) TCGA-AA-A010-01 9 82189837 82189837 C T TLE4 Missense_Mutation p.R65W 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 9 82322046 82322046 T C TLE4 Intron 0.37 TCGA-AA-A010-01 9 8375974 8375974 A G PTPRD Silent p.C1541C 0.30 TCGA-AA-A010-01 9 84205956 84205956 A G TLE1 Silent p.N531N 0.29 TCGA-AA-A010-01 9 84532714 84532714 A C SPATA31D5P RNA 0.31 TCGA-AA-A010-01 9 84532735 84532735 C T SPATA31D5P RNA 0.25 TCGA-AA-A010-01 9 84547907 84547907 C A RP11-383M4.6 Intron 0.82 TCGA-AA-A010-01 9 84606668 84606668 G T SPATA31D1 Missense_Mutation p.W428L 0.35 tolerated(0.68) benign(0.067) TCGA-AA-A010-01 9 8507303 8507303 C T PTPRD Missense_Mutation p.E559K 0.31 tolerated(0.72) probably_damaging(0.996) TCGA-AA-A010-01 9 86258426 86258426 G T IDNK Missense_Mutation p.D99Y 0.34 deleterious(0) possibly_damaging(0.793) TCGA-AA-A010-01 9 86276755 86276755 C A UBQLN1 Nonsense_Mutation p.G573* 0.44 TCGA-AA-A010-01 9 86297907 86297907 T G UBQLN1 Missense_Mutation p.N136T 0.40 tolerated(0.8) benign(0.039) TCGA-AA-A010-01 9 86506408 86506408 T G KIF27 Missense_Mutation p.K537N 0.47 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 9 86571358 86571358 C T C9orf64 Missense_Mutation p.D20N 0.37 tolerated(0.16) possibly_damaging(0.798) TCGA-AA-A010-01 9 86616399 86616399 A C RMI1 Missense_Mutation p.K166N 0.49 deleterious(0) probably_damaging(0.996) TCGA-AA-A010-01 9 87339188 87339188 C T NTRK2 Missense_Mutation p.S257F 0.37 tolerated(0.13) possibly_damaging(0.815) TCGA-AA-A010-01 9 88881084 88881084 C A ISCA1 Missense_Mutation p.K88N 0.37 tolerated(0.16) benign(0.03) TCGA-AA-A010-01 9 88940427 88940427 C A ZCCHC6 Silent p.V537V 0.53 TCGA-AA-A010-01 9 90255286 90255286 G A DAPK1 Missense_Mutation p.E235K 0.40 tolerated(0.41) benign(0.011) TCGA-AA-A010-01 9 90315114 90315114 C T DAPK1 Nonsense_Mutation p.R945* 0.31 TCGA-AA-A010-01 9 90315115 90315115 G A DAPK1 Missense_Mutation p.R945Q 0.40 deleterious(0.01) possibly_damaging(0.539) TCGA-AA-A010-01 9 90499849 90499849 C T SPATA31E1 Silent p.G149G 0.39 TCGA-AA-A010-01 9 90501321 90501321 C A SPATA31E1 Missense_Mutation p.S640Y 0.37 tolerated(0.15) possibly_damaging(0.749) TCGA-AA-A010-01 9 90503504 90503504 C T SPATA31E1 Missense_Mutation p.R1368C 0.35 deleterious(0) possibly_damaging(0.764) TCGA-AA-A010-01 9 91262406 91262406 G A RP13-60M5.2 RNA 0.35 TCGA-AA-A010-01 9 91610054 91610054 T - C9orf47 3'UTR 0.25 TCGA-AA-A010-01 9 91618803 91618803 T G S1PR3 3'UTR 0.28 TCGA-AA-A010-01 9 91619642 91619642 G T S1PR3 3'UTR 0.38 TCGA-AA-A010-01 9 91931361 91931361 A C CKS2 3'UTR 0.26 TCGA-AA-A010-01 9 91956351 91956351 C T SECISBP2 Silent p.H464H 0.31 TCGA-AA-A010-01 9 93375576 93375576 G A DIRAS2 Silent p.I178I 0.26 TCGA-AA-A010-01 9 94485932 94485932 C T ROR2 3'UTR 0.31 TCGA-AA-A010-01 9 94486585 94486585 C T ROR2 Missense_Mutation p.E731K 0.55 deleterious(0) probably_damaging(0.939) TCGA-AA-A010-01 9 94809461 94809461 C A SPTLC1 Missense_Mutation p.E358D 0.66 tolerated(0.33) benign(0.026) TCGA-AA-A010-01 9 94812247 94812247 T G SPTLC1 Missense_Mutation p.I295L 0.22 tolerated(0.11) benign(0.058) TCGA-AA-A010-01 9 95051580 95051580 T C IARS Intron 0.26 TCGA-AA-A010-01 9 95080905 95080905 G A NOL8 Missense_Mutation p.R161C 0.52 tolerated(0.06) benign(0.022) TCGA-AA-A010-01 9 95094497 95094497 G A CENPP Silent p.K51K 0.55 TCGA-AA-A010-01 9 95375476 95375476 A G IPPK 3'UTR 0.34 TCGA-AA-A010-01 9 95599135 95599135 G A ANKRD19P RNA 0.64 TCGA-AA-A010-01 9 95609788 95609788 A G ZNF484 Silent p.F429F 0.30 TCGA-AA-A010-01 9 95610101 95610101 T A ZNF484 Missense_Mutation p.Y325F 0.28 tolerated(0.13) benign(0) TCGA-AA-A010-01 9 95610657 95610657 G A ZNF484 Missense_Mutation p.R140C 0.24 deleterious(0.05) benign(0.27) TCGA-AA-A010-01 9 96312866 96312866 G T FAM120A Missense_Mutation p.V723L 0.48 tolerated(0.26) benign(0.003) TCGA-AA-A010-01 9 96324500 96324500 G T FAM120A Nonsense_Mutation p.G987* 0.50 TCGA-AA-A010-01 9 96408067 96408067 C A PHF2 Nonsense_Mutation p.Y152* 0.49 TCGA-AA-A010-01 9 96421853 96421853 G T PHF2 Missense_Mutation p.D434Y 0.28 deleterious(0) unknown(0) TCGA-AA-A010-01 9 98209264 98209264 G A PTCH1 Missense_Mutation p.S1425L 0.24 deleterious_low_confidence(0.04) benign(0.025) TCGA-AA-A010-01 9 98244169 98244169 A C PTCH1 Intron 0.27 TCGA-AA-A010-01 9 98660173 98660173 C T ERCC6L2 Missense_Mutation p.R183C 0.23 deleterious(0.01) possibly_damaging(0.893) TCGA-AA-A010-01 9 98683468 98683468 T C ERCC6L2 Silent p.C401C 0.22 TCGA-AA-A010-01 9 98683478 98683478 G T ERCC6L2 Missense_Mutation p.D405Y 0.62 deleterious(0) possibly_damaging(0.812) TCGA-AA-A010-01 9 98729017 98729017 C A ERCC6L2 3'UTR 0.24 TCGA-AA-A010-01 9 98735236 98735236 G T ERCC6L2 3'Flank 0.49 TCGA-AA-A010-01 9 99250433 99250433 A C HABP4 Silent p.T354T 0.25 TCGA-AA-A010-01 9 99327068 99327068 C A CDC14B Missense_Mutation p.K106N 0.32 deleterious(0.01) possibly_damaging(0.897) TCGA-AA-A010-01 9 99580178 99580178 T G ZNF782 3'UTR 0.58 TCGA-AA-A010-01 9 99580728 99580728 C A ZNF782 Missense_Mutation p.R526I 0.28 deleterious(0.02) probably_damaging(0.945) TCGA-AA-A010-01 9 99581064 99581064 C T ZNF782 Missense_Mutation p.R414K 0.33 tolerated(0.08) possibly_damaging(0.78) TCGA-AA-A010-01 9 99581565 99581565 T G ZNF782 Missense_Mutation p.K247T 0.34 tolerated(0.09) benign(0.014) TCGA-AA-A010-01 9 99581956 99581956 T G ZNF782 Missense_Mutation p.I117L 0.56 tolerated(0.11) benign(0.039) TCGA-AA-A010-01 X 100531346 100531346 C T TAF7L Missense_Mutation p.E374K 0.60 tolerated(1) benign(0) TCGA-AA-A010-01 X 100542485 100542485 A C TAF7L Missense_Mutation p.F102C 0.67 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 X 10096747 10096747 C T WWC3 Missense_Mutation p.R811W 0.06 deleterious(0) probably_damaging(0.994) TCGA-AA-A010-01 X 101091712 101091712 T C NXF5 Intron 0.60 TCGA-AA-A010-01 X 101768946 101768947 - A TMSB15A 3'UTR 0.35 TCGA-AA-A010-01 X 101805000 101805000 A G NXF4 RNA 0.60 TCGA-AA-A010-01 X 101910435 101910435 T C GPRASP1 Missense_Mutation p.S532P 0.60 deleterious(0.02) possibly_damaging(0.543) TCGA-AA-A010-01 X 101912651 101912651 T G GPRASP1 Nonsense_Mutation p.Y1270* 0.64 TCGA-AA-A010-01 X 101913584 101913584 G T GPRASP1 3'UTR 0.64 TCGA-AA-A010-01 X 102586925 102586925 T C TCEAL7 3'UTR 0.75 TCGA-AA-A010-01 X 102613103 102613103 C T WBP5 3'UTR 0.60 TCGA-AA-A010-01 X 102841769 102841769 G A TCEAL4 Missense_Mutation p.E56K 0.62 tolerated(0.11) benign(0.136) TCGA-AA-A010-01 X 102885471 102885471 C T TCEAL1 3'UTR 0.56 TCGA-AA-A010-01 X 102885746 102885747 - T TCEAL1 3'UTR 0.31 TCGA-AA-A010-01 X 105125725 105125725 C T NRK Nonsense_Mutation p.R69* 0.60 TCGA-AA-A010-01 X 105167144 105167144 C T NRK Missense_Mutation p.P883L 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 X 105451575 105451575 C A MUM1L1 3'UTR 0.62 TCGA-AA-A010-01 X 106083351 106083351 G A TBC1D8B Missense_Mutation p.R476Q 0.59 deleterious(0) probably_damaging(0.96) TCGA-AA-A010-01 X 107037454 107037454 T C NCBP2L Missense_Mutation p.S2P 0.43 tolerated_low_confidence(0.09) benign(0.032) TCGA-AA-A010-01 X 107310235 107310235 G A VSIG1 Missense_Mutation p.D131N 0.61 tolerated(1) benign(0.006) TCGA-AA-A010-01 X 107418969 107418969 A C COL4A6 Missense_Mutation p.I916M 0.64 probably_damaging(0.986) TCGA-AA-A010-01 X 107834847 107834847 G T COL4A5 Nonsense_Mutation p.G466* 0.65 TCGA-AA-A010-01 X 108625344 108625344 T C GUCY2F Intron 0.67 TCGA-AA-A010-01 X 108779087 108779087 C T NXT2 5'UTR 0.52 TCGA-AA-A010-01 X 108868112 108868112 G A KCNE1L Silent p.F46F 0.56 TCGA-AA-A010-01 X 109695333 109695333 G T RGAG1 Missense_Mutation p.K496N 0.66 tolerated(0.4) benign(0.098) TCGA-AA-A010-01 X 11161811 11161811 G T ARHGAP6 Intron 0.50 TCGA-AA-A010-01 X 111698945 111698945 A C ZCCHC16 3'UTR 0.60 TCGA-AA-A010-01 X 11316982 11316982 G A AMELX Silent p.P167P 0.69 TCGA-AA-A010-01 X 114238658 114238658 A C IL13RA2 Missense_Mutation p.F376L 0.47 deleterious_low_confidence(0) benign(0.003) TCGA-AA-A010-01 X 114239865 114239865 C T IL13RA2 Silent p.S337S 0.64 TCGA-AA-A010-01 X 114358546 114358546 C A LRCH2 Missense_Mutation p.G604V 0.61 tolerated(0.3) benign(0.002) TCGA-AA-A010-01 X 114426219 114426219 G A RBMXL3 Missense_Mutation p.D739N 0.64 tolerated_low_confidence(0.34) benign(0) TCGA-AA-A010-01 X 114426862 114426862 G A RBMXL3 Missense_Mutation p.R953Q 0.54 tolerated_low_confidence(0.41) benign(0.238) TCGA-AA-A010-01 X 114953364 114953364 G A RP1-241P17.4 Silent p.F62F 0.57 TCGA-AA-A010-01 X 117680025 117680025 A G DOCK11 Silent p.K168K 0.59 TCGA-AA-A010-01 X 117777480 117777480 C A DOCK11 Missense_Mutation p.L1441I 0.62 deleterious(0.01) probably_damaging(0.97) TCGA-AA-A010-01 X 117796732 117796732 A G DOCK11 Missense_Mutation p.M1685V 0.61 tolerated(0.16) benign(0.114) TCGA-AA-A010-01 X 11780325 11780325 A C MSL3 Missense_Mutation p.K181T 0.63 deleterious(0) possibly_damaging(0.816) TCGA-AA-A010-01 X 117814643 117814643 A G DOCK11 Missense_Mutation p.T1887A 0.60 deleterious(0) possibly_damaging(0.834) TCGA-AA-A010-01 X 11790783 11790783 G T MSL3 Missense_Mutation p.K475N 0.56 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A010-01 X 117960387 117960387 G A ZCCHC12 Missense_Mutation p.E394K 0.71 tolerated_low_confidence(0.22) benign(0.006) TCGA-AA-A010-01 X 118222004 118222004 G T KIAA1210 Missense_Mutation p.F1063L 0.60 tolerated(0.3) benign(0.168) TCGA-AA-A010-01 X 118715490 118715490 G T UBE2A Nonsense_Mutation p.E58* 0.61 TCGA-AA-A010-01 X 118985827 118985827 G A UPF3B Nonsense_Mutation p.R56* 0.57 TCGA-AA-A010-01 X 119054645 119054645 G T AKAP14 3'UTR 0.54 TCGA-AA-A010-01 X 119500469 119500469 G A ATP1B4 Silent p.S51S 0.61 TCGA-AA-A010-01 X 119500516 119500516 A G ATP1B4 Missense_Mutation p.E67G 0.65 tolerated(0.1) benign(0.392) TCGA-AA-A010-01 X 123034434 123034434 T G XIAP Missense_Mutation p.I397M 0.63 deleterious(0.02) benign(0.083) TCGA-AA-A010-01 X 123176435 123176435 A C STAG2 Missense_Mutation p.E134D 0.64 tolerated(0.07) benign(0.007) TCGA-AA-A010-01 X 123181256 123181256 T C STAG2 Silent p.N240N 0.69 TCGA-AA-A010-01 X 125299859 125299859 C T DCAF12L2 Missense_Mutation p.E17K 0.71 tolerated_low_confidence(0.21) benign(0.078) TCGA-AA-A010-01 X 128699842 128699842 A G OCRL Silent p.R446R 0.70 TCGA-AA-A010-01 X 128710312 128710312 C A OCRL Missense_Mutation p.S633Y 0.67 tolerated(0.42) benign(0.008) TCGA-AA-A010-01 X 128926733 128926733 G A SASH3 Missense_Mutation p.R241H 0.66 deleterious(0) possibly_damaging(0.65) TCGA-AA-A010-01 X 128957707 128957707 C A ZDHHC9 Missense_Mutation p.K145N 0.68 deleterious(0) possibly_damaging(0.721) TCGA-AA-A010-01 X 12906409 12906409 C A TLR7 Missense_Mutation p.L928I 0.55 deleterious(0) probably_damaging(0.98) TCGA-AA-A010-01 X 129149947 129149947 C T BCORL1 Missense_Mutation p.R1067W 0.62 probably_damaging(0.928) TCGA-AA-A010-01 X 129215360 129215360 G A ELF4 5'UTR 0.63 TCGA-AA-A010-01 X 129518926 129518926 C T GPR119 Missense_Mutation p.V166M 0.57 tolerated(0.76) benign(0.065) TCGA-AA-A010-01 X 129813619 129813619 G A ENOX2 Silent p.F148F 0.61 TCGA-AA-A010-01 X 130417006 130417006 G A IGSF1 Silent p.D300D 0.59 TCGA-AA-A010-01 X 130419990 130419990 A G IGSF1 Missense_Mutation p.S44P 0.59 tolerated(0.46) possibly_damaging(0.697) TCGA-AA-A010-01 X 131763119 131763119 T A HS6ST2 Missense_Mutation p.N357I 0.69 deleterious(0) possibly_damaging(0.857) TCGA-AA-A010-01 X 132161063 132161063 C A USP26 Missense_Mutation p.D396Y 0.53 deleterious(0) probably_damaging(0.961) TCGA-AA-A010-01 X 133379050 133379050 G A CCDC160 Missense_Mutation p.E74K 0.61 deleterious(0.04) possibly_damaging(0.486) TCGA-AA-A010-01 X 133700045 133700045 G A PLAC1 3'UTR 0.62 TCGA-AA-A010-01 X 133700350 133700350 G A PLAC1 Silent p.S121S 0.63 TCGA-AA-A010-01 X 133906106 133906106 G A FAM122B 3'UTR 0.66 TCGA-AA-A010-01 X 134125678 134125678 G T SMIM10 3'UTR 0.57 TCGA-AA-A010-01 X 134482518 134482518 C A ZNF449 Intron 0.64 TCGA-AA-A010-01 X 135106494 135106494 C T SLC9A6 Missense_Mutation p.R490C 0.58 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 X 135405205 135405205 C T GPR112 Silent p.H113H 0.64 TCGA-AA-A010-01 X 135485467 135485467 C T GPR112 Silent p.S2880S 0.57 TCGA-AA-A010-01 X 135954467 135954467 A G RBMX 3'Flank 0.64 TCGA-AA-A010-01 X 13637364 13637364 T G EGFL6 Splice_Site p.X395_splice 0.69 TCGA-AA-A010-01 X 13727204 13727204 G A RAB9A Silent p.E113E 0.62 TCGA-AA-A010-01 X 137714987 137714987 G T FGF13 3'Flank 0.71 TCGA-AA-A010-01 X 137715099 137715099 C T FGF13 Missense_Mutation p.R227Q 0.56 tolerated_low_confidence(0.27) possibly_damaging(0.815) TCGA-AA-A010-01 X 137793010 137793010 G A FGF13 Intron 0.60 TCGA-AA-A010-01 X 137793192 137793192 C A FGF13 Intron 0.58 TCGA-AA-A010-01 X 137939671 137939671 A G FGF13 Intron 0.57 TCGA-AA-A010-01 X 138643994 138643994 C T F9 Nonsense_Mutation p.R384* 0.50 TCGA-AA-A010-01 X 138708447 138708447 C T MCF2 Missense_Mutation p.D258N 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A010-01 X 138810929 138810929 C A ATP11C 3'UTR 0.62 TCGA-AA-A010-01 X 138908878 138908878 T G ATP11C Missense_Mutation p.R47S 0.66 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 X 140785694 140785694 C A SPANXD Missense_Mutation p.K74N 0.58 deleterious(0.01) benign(0.001) TCGA-AA-A010-01 X 140993849 140993849 G T MAGEC1 Missense_Mutation p.R220I 0.33 deleterious_low_confidence(0.04) benign(0) TCGA-AA-A010-01 X 140994421 140994421 C A MAGEC1 Missense_Mutation p.P411T 0.61 tolerated_low_confidence(0.08) possibly_damaging(0.641) TCGA-AA-A010-01 X 142716641 142716641 A C SLITRK4 Missense_Mutation p.F762V 0.61 tolerated(0.33) benign(0.079) TCGA-AA-A010-01 X 142717463 142717463 G T SLITRK4 Missense_Mutation p.L488M 0.56 tolerated(0.08) probably_damaging(0.996) TCGA-AA-A010-01 X 142717496 142717496 A C SLITRK4 Missense_Mutation p.L477V 0.55 deleterious(0) possibly_damaging(0.645) TCGA-AA-A010-01 X 142795328 142795328 G T SPANXN2 Nonsense_Mutation p.S117* 0.39 TCGA-AA-A010-01 X 142967515 142967515 G A UBE2NL Missense_Mutation p.V105I 0.58 tolerated(0.09) benign(0.144) TCGA-AA-A010-01 X 142967767 142967767 A C UBE2NL 3'UTR 0.61 TCGA-AA-A010-01 X 144905618 144905618 G A SLITRK2 Missense_Mutation p.E559K 0.55 tolerated(0.93) benign(0.017) TCGA-AA-A010-01 X 144905745 144905745 C T SLITRK2 Missense_Mutation p.S601L 0.67 tolerated(0.08) benign(0) TCGA-AA-A010-01 X 144910464 144910464 C A TMEM257 3'UTR 0.62 TCGA-AA-A010-01 X 14592670 14592670 G T GLRA2 Intron 0.59 TCGA-AA-A010-01 X 146318448 146318448 C T MIR508 RNA 0.62 TCGA-AA-A010-01 X 147063030 147063030 G A FMR1NB Silent p.S36S 0.58 TCGA-AA-A010-01 X 148068917 148068917 C A AFF2 Missense_Mutation p.S1215Y 0.59 tolerated(0.16) possibly_damaging(0.898) TCGA-AA-A010-01 X 14882986 14882986 G A FANCB Missense_Mutation p.S216F 0.70 deleterious(0.04) benign(0.045) TCGA-AA-A010-01 X 149814261 149814261 G A MTM1 Missense_Mutation p.D262N 0.55 tolerated(0.06) benign(0.099) TCGA-AA-A010-01 X 150842457 150842457 C A PASD1 Silent p.T658T 0.73 TCGA-AA-A010-01 X 151303450 151303450 G A MAGEA10 Silent p.L215L 0.60 TCGA-AA-A010-01 X 151304046 151304046 A C MAGEA10 Missense_Mutation p.L16R 0.65 tolerated(0.08) benign(0.034) TCGA-AA-A010-01 X 152686675 152686675 C T ZFP92 Silent p.I280I 0.69 TCGA-AA-A010-01 X 152686726 152686726 C T ZFP92 Silent p.C297C 0.80 TCGA-AA-A010-01 X 152845768 152845768 C A ATP2B3 3'UTR 0.54 TCGA-AA-A010-01 X 152994810 152994810 T C ABCD1 Missense_Mutation p.S342P 0.63 tolerated(0.1) benign(0.098) TCGA-AA-A010-01 X 153037718 153037718 C A PLXNB3 Silent p.I940I 0.68 TCGA-AA-A010-01 X 153055179 153055179 C T IDH3G Missense_Mutation p.V112M 0.66 deleterious(0) probably_damaging(0.995) TCGA-AA-A010-01 X 153069162 153069162 C A PDZD4 Missense_Mutation p.K652N 0.61 deleterious(0) probably_damaging(0.993) TCGA-AA-A010-01 X 153069861 153069861 C T PDZD4 Silent p.A419A 0.66 TCGA-AA-A010-01 X 153178188 153178188 C A ARHGAP4 Missense_Mutation p.R543I 0.64 deleterious(0.02) possibly_damaging(0.602) TCGA-AA-A010-01 X 153579289 153579289 C A FLNA Nonsense_Mutation p.E2382* 0.61 TCGA-AA-A010-01 X 153586936 153586936 C T FLNA Missense_Mutation p.G1492D 0.59 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 X 153690536 153690536 C T PLXNA3 Silent p.I401I 0.69 TCGA-AA-A010-01 X 153695040 153695040 C T PLXNA3 Missense_Mutation p.A1004V 0.62 tolerated(0.3) benign(0.007) TCGA-AA-A010-01 X 153908449 153908449 G A GAB3 Missense_Mutation p.A536V 0.48 deleterious(0) possibly_damaging(0.858) TCGA-AA-A010-01 X 154007499 154007499 G T MPP1 Missense_Mutation p.Q452K 0.69 tolerated(0.87) benign(0.024) TCGA-AA-A010-01 X 154088801 154088801 G T F8 Missense_Mutation p.S2269Y 0.57 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A010-01 X 154158674 154158674 T C F8 Missense_Mutation p.T1131A 0.65 tolerated(0.13) benign(0.011) TCGA-AA-A010-01 X 154159625 154159625 G A F8 Nonsense_Mutation p.R814* 0.62 TCGA-AA-A010-01 X 154215561 154215561 C A F8 Missense_Mutation p.K207N 0.60 tolerated(0.21) benign(0.024) TCGA-AA-A010-01 X 1544581 1544581 C A ASMTL Splice_Site p.X300_splice 0.66 TCGA-AA-A010-01 X 155007961 155007961 T C SPRY3 3'UTR 0.55 TCGA-AA-A010-01 X 155008536 155008536 C A SPRY3 3'UTR 0.57 TCGA-AA-A010-01 X 155011076 155011076 T G SPRY3 3'UTR 0.61 TCGA-AA-A010-01 X 155171749 155171749 C A VAMP7 Silent p.I243I 0.52 TCGA-AA-A010-01 X 155227375 155227375 G T IL9R 5'UTR 0.61 TCGA-AA-A010-01 X 15588432 15588432 G A ACE2 Missense_Mutation p.L628F 0.61 tolerated(0.05) benign(0.071) TCGA-AA-A010-01 X 15840963 15840963 T C ZRSR2 Silent p.S349S 0.63 TCGA-AA-A010-01 X 1584384 1584384 C A P2RY8 Missense_Mutation p.E356D 0.59 deleterious_low_confidence(0.02) possibly_damaging(0.659) TCGA-AA-A010-01 X 1585254 1585254 G A P2RY8 Silent p.S66S 0.63 TCGA-AA-A010-01 X 16168590 16168590 C A GRPR Silent p.T192T 0.61 TCGA-AA-A010-01 X 16850756 16850756 A C TXLNG Missense_Mutation p.K292T 0.80 deleterious(0) possibly_damaging(0.588) TCGA-AA-A010-01 X 16870700 16870700 C T RBBP7 Missense_Mutation p.E357K 0.60 deleterious(0.04) benign(0.199) TCGA-AA-A010-01 X 16870937 16870937 C T RBBP7 Missense_Mutation p.E318K 0.61 deleterious(0.02) probably_damaging(0.971) TCGA-AA-A010-01 X 17024395 17024395 T C REPS2 Missense_Mutation p.F109L 0.58 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 X 17743728 17743728 G A NHS Missense_Mutation p.R480H 0.59 tolerated(0.1) probably_damaging(0.997) TCGA-AA-A010-01 X 17745046 17745046 C T NHS Silent p.A919A 0.62 TCGA-AA-A010-01 X 18276343 18276343 C A SCML2 Missense_Mutation p.G365V 0.64 deleterious(0) probably_damaging(0.998) TCGA-AA-A010-01 X 18622328 18622328 C T CDKL5 Silent p.G428G 0.69 TCGA-AA-A010-01 X 18646617 18646617 C T CDKL5 Missense_Mutation p.R875W 0.61 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-AA-A010-01 X 18690150 18690150 G T RS1 Silent p.L13L 0.54 TCGA-AA-A010-01 X 18748333 18748333 C A PPEF1 Nonsense_Mutation p.Y27* 0.55 TCGA-AA-A010-01 X 19367458 19367458 A C PDHA1 Missense_Mutation p.N67T 0.62 tolerated(0.18) benign(0.003) TCGA-AA-A010-01 X 19373478 19373478 C T PDHA1 Silent p.F243F 0.67 TCGA-AA-A010-01 X 19392620 19392620 C A MAP3K15 Missense_Mutation p.K916N 0.65 deleterious(0.01) possibly_damaging(0.603) TCGA-AA-A010-01 X 20183031 20183031 A C RPS6KA3 Missense_Mutation p.F584V 0.64 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A010-01 X 216164 216164 C T PLCXD1 3'UTR 0.88 TCGA-AA-A010-01 X 21624994 21624994 C A CNKSR2 Silent p.P714P 0.53 TCGA-AA-A010-01 X 21627606 21627606 C A CNKSR2 Missense_Mutation p.H855N 0.59 tolerated(0.08) benign(0.148) TCGA-AA-A010-01 X 21674890 21674890 G A KLHL34 Silent p.F339F 0.67 TCGA-AA-A010-01 X 22050978 22050978 G A PHEX 5'UTR 0.70 TCGA-AA-A010-01 X 22095780 22095780 T C PHEX Missense_Mutation p.V208A 0.57 deleterious(0) probably_damaging(0.923) TCGA-AA-A010-01 X 22132624 22132624 A C PHEX Missense_Mutation p.N408H 0.58 tolerated(0.07) probably_damaging(0.961) TCGA-AA-A010-01 X 221761 221761 G A GTPBP6 Missense_Mutation p.R282W 0.58 deleterious(0) probably_damaging(0.932) TCGA-AA-A010-01 X 22186504 22186504 G T PHEX Missense_Mutation p.A494S 0.58 tolerated(0.53) benign(0.036) TCGA-AA-A010-01 X 23411472 23411472 T C PTCHD1 Silent p.L613L 0.65 TCGA-AA-A010-01 X 23412044 23412044 C A PTCHD1 Silent p.L803L 0.69 TCGA-AA-A010-01 X 23956725 23956725 T G CXorf58 Missense_Mutation p.F283V 0.67 tolerated(0.34) benign(0.001) TCGA-AA-A010-01 X 2406844 2406844 C T ZBED1 Silent p.A639A 0.61 TCGA-AA-A010-01 X 24225448 24225448 G A ZFX Missense_Mutation p.D218N 0.61 tolerated(0.08) benign(0.148) TCGA-AA-A010-01 X 24580417 24580417 T C PCYT1B Missense_Mutation p.E368G 0.61 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-AA-A010-01 X 24733284 24733284 T C POLA1 Silent p.G157G 0.46 TCGA-AA-A010-01 X 24759524 24759524 A G POLA1 Missense_Mutation p.H744R 0.71 tolerated(0.34) benign(0.012) TCGA-AA-A010-01 X 2688596 2688596 A C XG Silent p.R23R 0.64 TCGA-AA-A010-01 X 30237760 30237760 C A MAGEB2 3'UTR 0.69 TCGA-AA-A010-01 X 30254729 30254729 A G MAGEB3 Missense_Mutation p.M230V 0.59 deleterious(0.03) possibly_damaging(0.734) TCGA-AA-A010-01 X 3030225 3030225 T G ARSF Silent p.V467V 0.59 TCGA-AA-A010-01 X 30322827 30322827 C T NR0B1 Missense_Mutation p.E428K 0.55 tolerated(0.5) benign(0.044) TCGA-AA-A010-01 X 30738759 30738759 G T GK Missense_Mutation p.D414Y 0.63 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 X 31496380 31496380 C A DMD Missense_Mutation p.R2927I 0.65 possibly_damaging(0.506) TCGA-AA-A010-01 X 31514979 31514979 C T DMD Missense_Mutation p.D2825N 0.62 possibly_damaging(0.728) TCGA-AA-A010-01 X 3227963 3227963 G A MXRA5 Missense_Mutation p.P2761S 0.59 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 X 3229424 3229424 C T MXRA5 Missense_Mutation p.E2274K 0.62 tolerated(0.15) possibly_damaging(0.874) TCGA-AA-A010-01 X 32398752 32398752 G A DMD Missense_Mutation p.R1574C 0.56 probably_damaging(0.963) TCGA-AA-A010-01 X 3240192 3240192 C A MXRA5 Missense_Mutation p.E1178D 0.64 tolerated(0.27) benign(0.003) TCGA-AA-A010-01 X 32407761 32407761 G A DMD Nonsense_Mutation p.R1459* 0.53 TCGA-AA-A010-01 X 32407766 32407766 T G DMD Missense_Mutation p.K1457T 0.55 possibly_damaging(0.888) TCGA-AA-A010-01 X 3240874 3240874 G A MXRA5 Missense_Mutation p.S951L 0.60 tolerated(0.06) benign(0.129) TCGA-AA-A010-01 X 32717376 32717376 G T DMD Silent p.I228I 0.59 TCGA-AA-A010-01 X 34148862 34148862 G A FAM47A Missense_Mutation p.R512C 0.27 tolerated(0.11) benign(0.09) TCGA-AA-A010-01 X 34148901 34148901 G A FAM47A Missense_Mutation p.R499C 0.52 tolerated(0.12) possibly_damaging(0.858) TCGA-AA-A010-01 X 34149360 34149360 G A FAM47A Missense_Mutation p.R346W 0.65 deleterious(0.04) possibly_damaging(0.898) TCGA-AA-A010-01 X 34657431 34657431 C A TMEM47 Missense_Mutation p.L100F 0.62 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A010-01 X 36379444 36379444 G T CXorf30 Splice_Site p.X397_splice 0.73 TCGA-AA-A010-01 X 37028227 37028227 C A FAM47C Missense_Mutation p.L582I 0.60 tolerated_low_confidence(0.08) possibly_damaging(0.567) TCGA-AA-A010-01 X 39914723 39914723 G A BCOR Nonsense_Mutation p.R1547* 0.58 TCGA-AA-A010-01 X 39932400 39932400 C T BCOR Silent p.T733T 0.71 TCGA-AA-A010-01 X 40464996 40464996 C T ATP6AP2 Nonsense_Mutation p.R348* 0.60 TCGA-AA-A010-01 X 40508797 40508797 C A MED14 3'UTR 0.61 TCGA-AA-A010-01 X 41075559 41075559 C T USP9X Silent p.D1913D 0.65 TCGA-AA-A010-01 X 41201775 41201775 C T DDX3X Silent p.Y104Y 0.61 TCGA-AA-A010-01 X 41206161 41206161 T G DDX3X Missense_Mutation p.D555E 0.60 tolerated(0.2) benign(0.225) TCGA-AA-A010-01 X 41555920 41555920 G A GPR34 Missense_Mutation p.R345Q 0.61 tolerated(0.12) benign(0.241) TCGA-AA-A010-01 X 44922958 44922958 G A KDM6A Missense_Mutation p.V607M 0.63 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 X 46541842 46541842 C T SLC9A7 Missense_Mutation p.E152K 0.65 tolerated(0.15) benign(0.338) TCGA-AA-A010-01 X 46713109 46713109 T C RP2 Missense_Mutation p.F101L 0.60 deleterious(0) possibly_damaging(0.902) TCGA-AA-A010-01 X 47272185 47272185 G T ZNF157 Missense_Mutation p.R238I 0.58 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A010-01 X 47308729 47308729 C T ZNF41 Missense_Mutation p.R147H 0.55 tolerated(0.35) benign(0.022) TCGA-AA-A010-01 X 47488994 47488994 G A CFP Silent p.S52S 0.65 TCGA-AA-A010-01 X 47835717 47835717 C A ZNF182 Missense_Mutation p.R590I 0.68 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 X 47836638 47836638 G T ZNF182 Missense_Mutation p.T283N 0.48 tolerated(0.15) benign(0.295) TCGA-AA-A010-01 X 47978965 47978965 G T SSX6 RNA 0.57 TCGA-AA-A010-01 X 48270302 48270302 G A SSX4B Silent p.F25F 0.31 TCGA-AA-A010-01 X 48549747 48549747 A T WAS 3'UTR 0.76 TCGA-AA-A010-01 X 48650854 48650854 C A GATA1 Silent p.L241L 0.63 TCGA-AA-A010-01 X 48682588 48682588 C T HDAC6 Missense_Mutation p.R1155C 0.59 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 X 48772311 48772311 T G PIM2 Missense_Mutation p.Y194S 0.61 deleterious(0) probably_damaging(0.997) TCGA-AA-A010-01 X 48825717 48825717 C T KCND1 Missense_Mutation p.S321N 0.57 tolerated(0.06) possibly_damaging(0.549) TCGA-AA-A010-01 X 49069216 49069216 G A CACNA1F Missense_Mutation p.R1296C 0.62 deleterious(0) possibly_damaging(0.869) TCGA-AA-A010-01 X 49137756 49137756 G T PPP1R3F Intron 0.50 TCGA-AA-A010-01 X 49646670 49646670 T G USP27X 3'UTR 0.58 TCGA-AA-A010-01 X 49851137 49851137 C T CLCN5 Silent p.L389L 0.68 TCGA-AA-A010-01 X 50053873 50053873 C A CCNB3 Missense_Mutation p.P902T 0.50 tolerated(0.13) benign(0.005) TCGA-AA-A010-01 X 50111901 50111901 G T DGKK RNA 0.40 TCGA-AA-A010-01 X 51486818 51486818 C A GSPT2 Silent p.V32V 0.71 TCGA-AA-A010-01 X 53350040 53350040 C T IQSEC2 Silent p.E94E 0.59 TCGA-AA-A010-01 X 53595719 53595719 G A HUWE1 Missense_Mutation p.R2214W 0.70 probably_damaging(0.984) TCGA-AA-A010-01 X 54186047 54186047 G T FAM120C Silent p.V234V 0.50 TCGA-AA-A010-01 X 54586997 54586997 G A GNL3L Missense_Mutation p.D571N 0.65 tolerated(0.38) probably_damaging(0.942) TCGA-AA-A010-01 X 54783892 54783892 G A ITIH6 Missense_Mutation p.S872F 0.67 tolerated(0.07) possibly_damaging(0.897) TCGA-AA-A010-01 X 54835802 54835802 G A MAGED2 Missense_Mutation p.R13H 0.65 tolerated_low_confidence(0.35) benign(0.003) TCGA-AA-A010-01 X 54955115 54955115 C A TRO Missense_Mutation p.A653D 0.62 deleterious(0.03) unknown(0) TCGA-AA-A010-01 X 54956661 54956661 C T TRO Silent p.C1168C 0.12 TCGA-AA-A010-01 X 54956937 54956937 T G TRO Silent p.G1260G 0.60 TCGA-AA-A010-01 X 55020461 55020461 A G PFKFB1 5'UTR 0.63 TCGA-AA-A010-01 X 55782304 55782304 C T RRAGB Missense_Mutation p.R284C 0.60 deleterious(0.04) possibly_damaging(0.849) TCGA-AA-A010-01 X 56593190 56593190 G A UBQLN2 3'UTR 0.63 TCGA-AA-A010-01 X 57020707 57020707 G A SPIN3 Missense_Mutation p.T225I 0.63 tolerated(1) benign(0.063) TCGA-AA-A010-01 X 57021344 57021344 G A SPIN3 Missense_Mutation p.R13W 0.58 tolerated(0.1) possibly_damaging(0.794) TCGA-AA-A010-01 X 57934495 57934495 C A ZXDA Missense_Mutation p.R787I 0.63 deleterious(0.02) benign(0.011) TCGA-AA-A010-01 X 57935325 57935325 G A ZXDA Silent p.F510F 0.58 TCGA-AA-A010-01 X 57936272 57936272 C T ZXDA Missense_Mutation p.A195T 0.63 tolerated_low_confidence(0.29) benign(0.039) TCGA-AA-A010-01 X 5821528 5821528 G T NLGN4X Missense_Mutation p.F397L 0.71 tolerated(0.29) benign(0.002) TCGA-AA-A010-01 X 63005184 63005184 G A MIR1468 3'Flank 0.59 TCGA-AA-A010-01 X 63409751 63409751 G T AMER1 3'UTR 0.62 TCGA-AA-A010-01 X 63411762 63411762 C A AMER1 Nonsense_Mutation p.E469* 0.60 TCGA-AA-A010-01 X 67935142 67935142 C T STARD8 Missense_Mutation p.S53L 0.67 tolerated(0.73) benign(0.001) TCGA-AA-A010-01 X 68059878 68059878 C T EFNB1 Missense_Mutation p.A192V 0.52 tolerated(0.42) benign(0.003) TCGA-AA-A010-01 X 68840740 68840740 G A EDA Intron 0.57 TCGA-AA-A010-01 X 69282374 69282374 C A OTUD6A 5'UTR 0.62 TCGA-AA-A010-01 X 69563563 69563563 C T KIF4A Missense_Mutation p.A426V 0.52 tolerated(0.1) benign(0.004) TCGA-AA-A010-01 X 69652246 69652246 C T GDPD2 Missense_Mutation p.S517L 0.67 deleterious(0) probably_damaging(0.999) TCGA-AA-A010-01 X 70357413 70357413 T C MED12 Silent p.S1918S 0.55 TCGA-AA-A010-01 X 70375107 70375107 C T NLGN3 Silent p.H207H 0.69 TCGA-AA-A010-01 X 70387356 70387356 G A NLGN3 Missense_Mutation p.R470H 0.63 deleterious(0.01) probably_damaging(1) TCGA-AA-A010-01 X 70514212 70514212 G A NONO Missense_Mutation p.E162K 0.63 deleterious(0.03) possibly_damaging(0.854) TCGA-AA-A010-01 X 70678209 70678209 T G TAF1 Missense_Mutation p.V1706G 0.53 tolerated_low_confidence(0.66) benign(0) TCGA-AA-A010-01 X 71349760 71349760 C T RGAG4 Missense_Mutation p.R544Q 0.61 deleterious_low_confidence(0) unknown(0) TCGA-AA-A010-01 X 71359837 71359837 T C NHSL2 Silent p.T813T 0.62 TCGA-AA-A010-01 X 73506965 73506965 A G MIR545 RNA 0.63 TCGA-AA-A010-01 X 73961697 73961697 C A KIAA2022 Nonsense_Mutation p.E899* 0.58 TCGA-AA-A010-01 X 73961711 73961711 G T KIAA2022 Missense_Mutation p.T894N 0.57 tolerated(0.13) benign(0.071) TCGA-AA-A010-01 X 73963372 73963372 G A KIAA2022 Silent p.S340S 0.62 TCGA-AA-A010-01 X 73964049 73964049 G A KIAA2022 Missense_Mutation p.P115S 0.55 tolerated(0.06) probably_damaging(0.997) TCGA-AA-A010-01 X 74513339 74513339 C T UPRT Missense_Mutation p.A140V 0.51 deleterious(0.01) probably_damaging(0.978) TCGA-AA-A010-01 X 74516222 74516222 G T UPRT Nonsense_Mutation p.E159* 0.43 TCGA-AA-A010-01 X 74648997 74648997 G T ZDHHC15 Missense_Mutation p.F173L 0.45 deleterious(0) possibly_damaging(0.835) TCGA-AA-A010-01 X 76940497 76940497 T G ATRX Missense_Mutation p.N199T 0.59 probably_damaging(0.982) TCGA-AA-A010-01 X 77086342 77086342 G A MAGT1 Missense_Mutation p.L350F 0.59 deleterious(0) possibly_damaging(0.558) TCGA-AA-A010-01 X 79700710 79700710 G A FAM46D 3'UTR 0.60 TCGA-AA-A010-01 X 82763692 82763692 G A POU3F4 Silent p.P120P 0.63 TCGA-AA-A010-01 X 82763831 82763831 C T POU3F4 Nonsense_Mutation p.R167* 0.61 TCGA-AA-A010-01 X 83128279 83128279 C A CYLC1 Missense_Mutation p.S188Y 0.55 tolerated(0.24) benign(0.354) TCGA-AA-A010-01 X 83362045 83362045 G T RPS6KA6 Missense_Mutation p.S372Y 0.66 deleterious(0) probably_damaging(0.968) TCGA-AA-A010-01 X 83588783 83588783 G T HDX Missense_Mutation p.S603Y 0.71 deleterious(0.02) probably_damaging(0.915) TCGA-AA-A010-01 X 8565162 8565162 C T KAL1 Missense_Mutation p.E152K 0.55 deleterious(0.03) possibly_damaging(0.655) TCGA-AA-A010-01 X 85950050 85950050 G T DACH2 Missense_Mutation p.D267Y 0.45 deleterious(0) possibly_damaging(0.562) TCGA-AA-A010-01 X 86887340 86887340 C T KLHL4 Silent p.D485D 0.64 TCGA-AA-A010-01 X 86888768 86888768 A G KLHL4 Silent p.G523G 0.51 TCGA-AA-A010-01 X 86890682 86890682 G T KLHL4 Missense_Mutation p.G611V 0.61 deleterious(0) probably_damaging(0.979) TCGA-AA-A010-01 X 88008449 88008449 G A CPXCR1 Missense_Mutation p.A12T 0.52 tolerated(0.16) benign(0.023) TCGA-AA-A010-01 X 88008711 88008711 A C CPXCR1 Missense_Mutation p.K99T 0.56 deleterious(0) possibly_damaging(0.859) TCGA-AA-A010-01 X 89177067 89177067 C T TGIF2LX 5'UTR 0.60 TCGA-AA-A010-01 X 8993418 8993418 G A FAM9B Intron 0.50 TCGA-AA-A010-01 X 90690490 90690490 C A PABPC5 5'UTR 0.48 TCGA-AA-A010-01 X 90691591 90691591 C T PABPC5 Nonsense_Mutation p.Q339* 0.50 TCGA-AA-A010-01 X 91132615 91132615 A - PCDH11X Frame_Shift_Del p.N460Mfs*12 0.35 TCGA-AA-A010-01 X 91132907 91132907 C A PCDH11X Silent p.V556V 0.62 TCGA-AA-A010-01 X 91133093 91133093 T C PCDH11X Silent p.I618I 0.60 TCGA-AA-A010-01 X 91134136 91134136 T C PCDH11X Missense_Mutation p.L966P 0.60 deleterious(0) probably_damaging(1) TCGA-AA-A010-01 X 91873860 91873860 C A PCDH11X Missense_Mutation p.P1322H 0.59 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A010-01 X 92964645 92964645 G A FAM133A Missense_Mutation p.S76N 0.51 tolerated_low_confidence(0.34) possibly_damaging(0.641) TCGA-AA-A01P-01 10 101120678 101120678 C T CNNM1 Missense_Mutation p.R602W 0.08 deleterious(0) possibly_damaging(0.579) TCGA-AA-A01P-01 10 102300446 102300446 T G HIF1AN Missense_Mutation p.F162V 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-AA-A01P-01 10 102738989 102738989 G A SEMA4G Missense_Mutation p.R315H 0.07 tolerated(0.19) benign(0.001) TCGA-AA-A01P-01 10 102762593 102762593 C - LZTS2 Frame_Shift_Del p.S102Afs*41 0.17 TCGA-AA-A01P-01 10 102894092 102894092 G A TLX1 Silent p.A243A 0.24 TCGA-AA-A01P-01 10 103558599 103558599 T - MGEA5 Frame_Shift_Del p.I604Lfs*17 0.14 TCGA-AA-A01P-01 10 104019856 104019856 T G GBF1 Missense_Mutation p.V49G 0.12 tolerated(0.05) benign(0.258) TCGA-AA-A01P-01 10 104233693 104233693 C T TMEM180 Silent p.G405G 0.14 TCGA-AA-A01P-01 10 104417153 104417153 G A TRIM8 3'UTR 0.19 TCGA-AA-A01P-01 10 105363391 105363391 G - SH3PXD2A Frame_Shift_Del p.S501Afs*43 0.14 TCGA-AA-A01P-01 10 105823551 105823551 C T COL17A1 Silent p.A264A 0.15 TCGA-AA-A01P-01 10 114925524 114925524 G A TCF7L2 Silent p.P534P 0.25 TCGA-AA-A01P-01 10 115602168 115602168 T C DCLRE1A Missense_Mutation p.T867A 0.18 deleterious(0) possibly_damaging(0.475) TCGA-AA-A01P-01 10 118321050 118321050 G T PNLIP Missense_Mutation p.L412F 0.16 deleterious(0) probably_damaging(0.936) TCGA-AA-A01P-01 10 120795535 120795535 T A EIF3A 3'UTR 0.08 TCGA-AA-A01P-01 10 121429592 121429593 CT - BAG3 Frame_Shift_Del p.L138Afs*11 0.15 TCGA-AA-A01P-01 10 124672354 124672354 G A FAM24A Missense_Mutation p.A68T 0.18 deleterious(0.04) possibly_damaging(0.558) TCGA-AA-A01P-01 10 124800808 124800808 T A ACADSB Nonsense_Mutation p.Y198* 0.13 TCGA-AA-A01P-01 10 126172763 126172763 C T LHPP Missense_Mutation p.R61W 0.23 deleterious(0) probably_damaging(0.967) TCGA-AA-A01P-01 10 127491480 127491480 G A UROS Intron 0.08 TCGA-AA-A01P-01 10 129055618 129055620 TCA - DOCK1 In_Frame_Del p.I970del 0.23 TCGA-AA-A01P-01 10 134942559 134942559 C T GPR123 Silent p.H409H 0.22 TCGA-AA-A01P-01 10 135122629 135122629 T C ZNF511 Intron 0.19 TCGA-AA-A01P-01 10 18816590 18816590 G A CACNB2 Missense_Mutation p.A340T 0.23 tolerated(0.39) probably_damaging(1) TCGA-AA-A01P-01 10 25887279 25887279 C T GPR158 Silent p.S908S 0.23 TCGA-AA-A01P-01 10 27459056 27459056 A - MASTL Frame_Shift_Del p.K391Nfs*12 0.20 TCGA-AA-A01P-01 10 327145 327145 C A DIP2C Silent p.T1471T 0.24 TCGA-AA-A01P-01 10 33211216 33211216 T C ITGB1 Missense_Mutation p.N366S 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01P-01 10 34620076 34620076 C T PARD3 Silent p.A937A 0.13 TCGA-AA-A01P-01 10 35928666 35928666 C T FZD8 Silent p.T564T 0.19 TCGA-AA-A01P-01 10 38305913 38305913 C A ZNF33A Missense_Mutation p.L42M 0.03 deleterious(0) probably_damaging(0.997) TCGA-AA-A01P-01 10 48389682 48389682 G T RBP3 Missense_Mutation p.P399H 0.25 tolerated(0.12) possibly_damaging(0.648) TCGA-AA-A01P-01 10 49943988 49943988 G A WDFY4 Missense_Mutation p.R584Q 0.20 tolerated(0.06) probably_damaging(0.996) TCGA-AA-A01P-01 10 50374981 50374981 G A C10orf128 Silent p.C57C 0.19 TCGA-AA-A01P-01 10 50818844 50818844 G A SLC18A3 Missense_Mutation p.A20T 0.29 tolerated(0.53) benign(0.004) TCGA-AA-A01P-01 10 50856591 50856591 C T CHAT Silent p.C440C 0.19 TCGA-AA-A01P-01 10 5948243 5948243 C A FBXO18 Missense_Mutation p.A185D 0.23 tolerated(0.58) benign(0.003) TCGA-AA-A01P-01 10 61005393 61005393 T C PHYHIPL 3'UTR 0.16 TCGA-AA-A01P-01 10 61956308 61956308 C T ANK3 Missense_Mutation p.A589T 0.22 probably_damaging(0.988) TCGA-AA-A01P-01 10 64136406 64136406 G A ZNF365 Missense_Mutation p.D152N 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.857) TCGA-AA-A01P-01 10 64566980 64566980 C T ADO 3'UTR 0.18 TCGA-AA-A01P-01 10 7247880 7247880 A T SFMBT2 Silent p.T447T 0.30 TCGA-AA-A01P-01 10 73046540 73046540 G A UNC5B Missense_Mutation p.R216H 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 10 74714399 74714399 C A PLA2G12B Silent p.G15G 0.29 TCGA-AA-A01P-01 10 75434745 75434745 G A AGAP5 Missense_Mutation p.S558F 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A01P-01 10 7759596 7759596 G A ITIH2 Missense_Mutation p.A159T 0.10 tolerated(0.08) benign(0.053) TCGA-AA-A01P-01 10 93046 93046 G A TUBB8 Missense_Mutation p.T429M 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-AA-A01P-01 10 93390161 93390164 CAGA - PPP1R3C Frame_Shift_Del p.C158Wfs*11 0.16 TCGA-AA-A01P-01 10 93695423 93695423 C T BTAF1 Silent p.R8R 0.21 TCGA-AA-A01P-01 10 94294479 94294479 A - IDE Frame_Shift_Del p.L116Wfs*43 0.27 TCGA-AA-A01P-01 10 95395365 95395365 A T PDE6C Nonsense_Mutation p.K461* 0.20 TCGA-AA-A01P-01 10 97366665 97366665 C T ALDH18A1 Missense_Mutation p.A748T 0.06 deleterious(0) probably_damaging(0.995) TCGA-AA-A01P-01 10 99225822 99225822 G A MMS19 Missense_Mutation p.R534C 0.19 tolerated(0.2) benign(0) TCGA-AA-A01P-01 10 99623827 99623827 C A GOLGA7B Silent p.T93T 0.25 TCGA-AA-A01P-01 11 101762304 101762304 T - ANGPTL5 Frame_Shift_Del p.E292Kfs*30 0.26 TCGA-AA-A01P-01 11 103907872 103907872 C T DDI1 Missense_Mutation p.R108C 0.39 deleterious(0.03) possibly_damaging(0.517) TCGA-AA-A01P-01 11 108385286 108385286 A G EXPH5 Silent p.F316F 0.11 TCGA-AA-A01P-01 11 111224983 111224983 C T POU2AF1 3'UTR 0.49 TCGA-AA-A01P-01 11 111225080 111225080 G A POU2AF1 Missense_Mutation p.A226V 0.10 tolerated(0.46) benign(0.403) TCGA-AA-A01P-01 11 111407364 111407364 A - C11orf88 Intron 0.43 TCGA-AA-A01P-01 11 113210035 113210035 A - TTC12 Frame_Shift_Del p.A224Qfs*20 0.24 TCGA-AA-A01P-01 11 116691857 116691857 C T APOA4 Missense_Mutation p.R306Q 0.32 tolerated(0.42) benign(0.004) TCGA-AA-A01P-01 11 118416850 118416850 C T IFT46 Intron 0.25 TCGA-AA-A01P-01 11 118774005 118774005 C - BCL9L Frame_Shift_Del p.G230Afs*62 0.11 TCGA-AA-A01P-01 11 118981660 118981660 C T C2CD2L Missense_Mutation p.A225V 0.19 tolerated(0.49) benign(0.038) TCGA-AA-A01P-01 11 119996525 119996525 C - TRIM29 Frame_Shift_Del p.E403Rfs*7 0.16 TCGA-AA-A01P-01 11 124764107 124764107 G A ROBO4 Silent p.C436C 0.33 TCGA-AA-A01P-01 11 126081416 126081416 C T RPUSD4 Missense_Mutation p.A40T 0.20 tolerated(0.15) benign(0) TCGA-AA-A01P-01 11 126134283 126134283 G A SRPR Silent p.A559A 0.43 TCGA-AA-A01P-01 11 1264223 1264223 C - MUC5B Frame_Shift_Del p.S2040Pfs*51 0.13 TCGA-AA-A01P-01 11 1269737 1269737 C - MUC5B Frame_Shift_Del p.S3878Pfs*27 0.11 TCGA-AA-A01P-01 11 129784891 129784891 C T PRDM10 Missense_Mutation p.R854Q 0.39 deleterious(0) probably_damaging(0.99) TCGA-AA-A01P-01 11 1316884 1316884 C T TOLLIP Silent p.T58T 0.18 TCGA-AA-A01P-01 11 16071467 16071467 C A SOX6 Missense_Mutation p.Q423H 0.23 deleterious(0) probably_damaging(0.956) TCGA-AA-A01P-01 11 20136247 20136247 G A NAV2 Missense_Mutation p.R2416Q 0.16 deleterious(0.05) probably_damaging(0.98) TCGA-AA-A01P-01 11 2356865 2356865 G A CD81-AS1 Intron 0.23 TCGA-AA-A01P-01 11 26725175 26725175 T G SLC5A12 Missense_Mutation p.T242P 0.24 deleterious(0.01) benign(0.197) TCGA-AA-A01P-01 11 2797207 2797207 C T KCNQ1 Silent p.Y536Y 0.22 TCGA-AA-A01P-01 11 30034788 30034788 A G KCNA4 5'UTR 0.21 TCGA-AA-A01P-01 11 32724492 32724492 T C CCDC73 Splice_Site p.X70_splice 0.18 TCGA-AA-A01P-01 11 44639896 44639896 A G CD82 Missense_Mutation p.D208G 0.13 tolerated(0.05) benign(0.049) TCGA-AA-A01P-01 11 45672137 45672137 G T CHST1 Silent p.R113R 0.21 TCGA-AA-A01P-01 11 46397165 46397165 G C DGKZ Missense_Mutation p.A820P 0.29 tolerated(0.17) benign(0.004) TCGA-AA-A01P-01 11 46726938 46726939 CA - ZNF408 Frame_Shift_Del p.T565Afs*67 0.10 TCGA-AA-A01P-01 11 47380515 47380515 A T SPI1 Missense_Mutation p.S126T 0.11 tolerated(0.22) possibly_damaging(0.574) TCGA-AA-A01P-01 11 47837029 47837029 A G NUP160 Splice_Site p.X562_splice 0.16 TCGA-AA-A01P-01 11 5410837 5410837 C A OR51M1 Missense_Mutation p.P70H 0.23 deleterious(0) probably_damaging(0.969) TCGA-AA-A01P-01 11 55606992 55606992 C T OR5D16 Silent p.G255G 0.18 TCGA-AA-A01P-01 11 55681819 55681819 C A OR5W2 Missense_Mutation p.K80N 0.21 deleterious(0.03) benign(0.392) TCGA-AA-A01P-01 11 55762007 55762007 A G OR5F1 Missense_Mutation p.L32P 0.09 deleterious(0) possibly_damaging(0.577) TCGA-AA-A01P-01 11 55762021 55762021 G T OR5F1 Silent p.L27L 0.11 TCGA-AA-A01P-01 11 56058463 56058463 C T OR8H1 Missense_Mutation p.A26T 0.08 tolerated(0.12) benign(0.071) TCGA-AA-A01P-01 11 62396762 62396762 C T GANAB Missense_Mutation p.V636M 0.24 tolerated(0.08) possibly_damaging(0.886) TCGA-AA-A01P-01 11 62557444 62557444 G A TMEM179B Silent p.R195R 0.17 TCGA-AA-A01P-01 11 64367355 64367356 - C SLC22A12 Frame_Shift_Ins p.H428Pfs*178 0.20 TCGA-AA-A01P-01 11 65396091 65396091 G A PCNXL3 Missense_Mutation p.R1243H 0.22 tolerated(0.28) benign(0.177) TCGA-AA-A01P-01 11 66052404 66052404 G A YIF1A Silent p.F225F 0.32 TCGA-AA-A01P-01 11 67223031 67223031 G - CABP4 Frame_Shift_Del p.L48Sfs*84 0.21 TCGA-AA-A01P-01 11 68518048 68518048 C T MTL5 Silent p.P27P 0.28 TCGA-AA-A01P-01 11 68701323 68701323 C T IGHMBP2 Silent p.T493T 0.16 TCGA-AA-A01P-01 11 70172859 70172859 A T PPFIA1 Missense_Mutation p.T289S 0.20 tolerated(0.08) benign(0.148) TCGA-AA-A01P-01 11 72141383 72141383 C T CLPB Missense_Mutation p.R143H 0.17 deleterious(0.01) benign(0.035) TCGA-AA-A01P-01 11 722413 722413 T C EPS8L2 Missense_Mutation p.C358R 0.16 deleterious(0) possibly_damaging(0.866) TCGA-AA-A01P-01 11 73022742 73022742 C T ARHGEF17 Missense_Mutation p.P1020L 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.844) TCGA-AA-A01P-01 11 73796817 73796817 A G C2CD3 Silent p.P1252P 0.19 TCGA-AA-A01P-01 11 74424467 74424467 C G CHRDL2 Missense_Mutation p.V85L 0.19 deleterious(0.01) possibly_damaging(0.891) TCGA-AA-A01P-01 11 75439155 75439155 C T MOGAT2 Nonsense_Mutation p.R206* 0.18 TCGA-AA-A01P-01 11 75442241 75442241 C T MOGAT2 Silent p.H305H 0.13 TCGA-AA-A01P-01 11 86123451 86123451 G A CCDC81 Missense_Mutation p.R414Q 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 11 8752415 8752415 G A ST5 Missense_Mutation p.P141L 0.32 tolerated_low_confidence(1) benign(0) TCGA-AA-A01P-01 12 101477501 101477501 C T ANO4 Missense_Mutation p.R446W 0.14 deleterious(0) probably_damaging(0.986) TCGA-AA-A01P-01 12 105531721 105531721 A G KIAA1033 Missense_Mutation p.M462V 0.23 tolerated(0.98) benign(0.001) TCGA-AA-A01P-01 12 105534823 105534823 G - KIAA1033 Frame_Shift_Del 0.19 TCGA-AA-A01P-01 12 106890685 106890685 C T POLR3B Silent p.S991S 0.23 TCGA-AA-A01P-01 12 107208978 107208978 G T RIC8B Missense_Mutation p.D213Y 0.08 deleterious(0.01) possibly_damaging(0.898) TCGA-AA-A01P-01 12 109994735 109994735 G - MMAB 3'UTR 0.26 TCGA-AA-A01P-01 12 110475213 110475213 G A ANKRD13A Missense_Mutation p.A543T 0.10 tolerated(0.34) benign(0.001) TCGA-AA-A01P-01 12 112668612 112668612 C T HECTD4 Missense_Mutation p.R1926H 0.22 probably_damaging(0.977) TCGA-AA-A01P-01 12 113617087 113617087 G A DDX54 Missense_Mutation p.T142M 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 12 117584042 117584043 GT - FBXO21 Frame_Shift_Del p.H579Pfs*2 0.20 TCGA-AA-A01P-01 12 118823947 118823948 - A SUDS3 Frame_Shift_Ins p.L102Tfs*21 0.17 TCGA-AA-A01P-01 12 120595771 120595771 G A GCN1L1 Missense_Mutation p.T990M 0.17 benign(0.006) TCGA-AA-A01P-01 12 121437418 121437418 G A HNF1A Missense_Mutation p.A586T 0.20 tolerated_low_confidence(0.37) benign(0.001) TCGA-AA-A01P-01 12 122217348 122217348 C T TMEM120B 3'UTR 0.20 TCGA-AA-A01P-01 12 12274182 12274182 G - LRP6 Frame_Shift_Del p.R1574Efs*70 0.09 TCGA-AA-A01P-01 12 122839674 122839674 G A CLIP1 Silent p.D397D 0.20 TCGA-AA-A01P-01 12 123186558 123186558 G A HCAR2 3'UTR 0.08 TCGA-AA-A01P-01 12 124221620 124221620 C T ATP6V0A2 Silent p.T280T 0.24 TCGA-AA-A01P-01 12 125465316 125465316 C T DHX37 Missense_Mutation p.R153H 0.19 deleterious(0.03) benign(0.001) TCGA-AA-A01P-01 12 130926735 130926735 C T RIMBP2 Missense_Mutation p.V371I 0.22 tolerated(0.39) benign(0.004) TCGA-AA-A01P-01 12 131471773 131471773 C T GPR133 Silent p.L208L 0.24 TCGA-AA-A01P-01 12 27127011 27127011 G T TM7SF3 Missense_Mutation p.P534T 0.13 deleterious(0) possibly_damaging(0.886) TCGA-AA-A01P-01 12 27850071 27850071 G A REP15 Silent p.L192L 0.11 TCGA-AA-A01P-01 12 28122398 28122398 G A PTHLH Silent p.S10S 0.30 TCGA-AA-A01P-01 12 31237544 31237544 G A DDX11 Missense_Mutation p.E141K 0.10 tolerated(0.12) probably_damaging(0.933) TCGA-AA-A01P-01 12 31256913 31256913 G A DDX11 Silent p.Q953Q 0.09 TCGA-AA-A01P-01 12 32900056 32900056 T C YARS2 3'UTR 0.10 TCGA-AA-A01P-01 12 3600744 3600744 T G PRMT8 5'UTR 0.17 TCGA-AA-A01P-01 12 39751154 39751156 TTA - KIF21A In_Frame_Del p.N434del 0.22 TCGA-AA-A01P-01 12 40689418 40689418 T C LRRK2 Missense_Mutation p.L1023P 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 12 46322511 46322511 G A SCAF11 Missense_Mutation p.R325C 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 12 48104653 48104653 A G ENDOU Missense_Mutation p.W389R 0.17 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 12 48134326 48134326 G T RAPGEF3 Intron 0.14 TCGA-AA-A01P-01 12 48181929 48181929 C T HDAC7 Missense_Mutation p.G752S 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 12 49088182 49088182 C T CCNT1 Missense_Mutation p.R272Q 0.20 tolerated(1) benign(0.008) TCGA-AA-A01P-01 12 4920363 4920363 G A KCNA6 Missense_Mutation p.G386R 0.14 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 12 49310877 49310877 G T CCDC65 Missense_Mutation p.D199Y 0.16 deleterious(0) probably_damaging(0.935) TCGA-AA-A01P-01 12 49993957 49993957 C T FAM186B Missense_Mutation p.R489Q 0.18 tolerated(0.62) benign(0.049) TCGA-AA-A01P-01 12 50039634 50039634 C T FMNL3 Silent p.P1016P 0.08 TCGA-AA-A01P-01 12 5025805 5025805 A G KCNA1 3'UTR 0.37 TCGA-AA-A01P-01 12 50748393 50748393 T - FAM186A Frame_Shift_Del p.K741Rfs*10 0.10 TCGA-AA-A01P-01 12 51108286 51108287 CT - DIP2B Frame_Shift_Del p.F921Sfs*62 0.19 TCGA-AA-A01P-01 12 51237626 51237626 T G TMPRSS12 Missense_Mutation p.D63E 0.25 tolerated(0.22) benign(0.024) TCGA-AA-A01P-01 12 52629094 52629094 C T KRT7 Silent p.G160G 0.22 TCGA-AA-A01P-01 12 52960743 52960743 G T KRT74 3'UTR 0.23 TCGA-AA-A01P-01 12 53216979 53216979 A G KRT79 Silent p.R396R 0.19 TCGA-AA-A01P-01 12 53818197 53818197 C T AMHR2 Missense_Mutation p.R59C 0.17 deleterious(0.01) benign(0.009) TCGA-AA-A01P-01 12 54764809 54764809 G A ZNF385A Missense_Mutation p.P246S 0.28 tolerated(1) possibly_damaging(0.575) TCGA-AA-A01P-01 12 56351304 56351304 G A PMEL Silent p.D261D 0.16 TCGA-AA-A01P-01 12 56863169 56863169 T C SPRYD4 Silent p.G144G 0.26 TCGA-AA-A01P-01 12 57345952 57345952 A C RDH16 Missense_Mutation p.L272R 0.17 deleterious(0) probably_damaging(0.997) TCGA-AA-A01P-01 12 57590875 57590875 C A LRP1 Silent p.G3001G 0.13 TCGA-AA-A01P-01 12 57843559 57843559 C T INHBC Silent p.Y271Y 0.21 TCGA-AA-A01P-01 12 6127608 6127608 C T VWF Missense_Mutation p.R1659Q 0.23 tolerated(0.31) benign(0.012) TCGA-AA-A01P-01 12 68051038 68051038 G A DYRK2 Silent p.T117T 0.18 TCGA-AA-A01P-01 12 6806743 6806743 C T PIANP Missense_Mutation p.R78Q 0.08 tolerated_low_confidence(0.48) benign(0.417) TCGA-AA-A01P-01 12 69135653 69135653 C T NUP107 Missense_Mutation p.P855S 0.18 deleterious(0) probably_damaging(0.986) TCGA-AA-A01P-01 12 7310658 7310658 C - CLSTN3 Frame_Shift_Del p.P953Hfs*106 0.25 TCGA-AA-A01P-01 12 8211768 8211768 G A C3AR1 Silent p.I338I 0.20 TCGA-AA-A01P-01 12 88457881 88457881 T C CEP290 Missense_Mutation p.I2049M 0.20 benign(0.352) TCGA-AA-A01P-01 12 9098842 9098842 T G M6PR Missense_Mutation p.K53N 0.09 deleterious(0.05) benign(0.056) TCGA-AA-A01P-01 12 98848973 98848973 C T SLC9A7P1 RNA 0.24 TCGA-AA-A01P-01 12 99640070 99640070 T C ANKS1B Missense_Mutation p.T777A 0.28 tolerated(0.74) benign(0.241) TCGA-AA-A01P-01 13 102220063 102220063 T C ITGBL1 Silent p.C110C 0.17 TCGA-AA-A01P-01 13 112722389 112722389 C T SOX1 Silent p.G139G 0.10 TCGA-AA-A01P-01 13 112723725 112723725 G T SOX1 3'UTR 0.24 TCGA-AA-A01P-01 13 112723897 112723898 - C SOX1 3'UTR 0.12 TCGA-AA-A01P-01 13 113798334 113798334 G A F10 Silent p.Q224Q 0.25 TCGA-AA-A01P-01 13 113832595 113832595 C T PCID2 Missense_Mutation p.V427I 0.11 tolerated(1) benign(0.003) TCGA-AA-A01P-01 13 114083272 114083272 G A ADPRHL1 Missense_Mutation p.T214M 0.27 tolerated(0.35) benign(0.008) TCGA-AA-A01P-01 13 20656974 20656974 G T ZMYM2 Nonsense_Mutation p.G1208* 0.12 TCGA-AA-A01P-01 13 21396329 21396329 C A XPO4 Nonsense_Mutation p.G314* 0.24 TCGA-AA-A01P-01 13 22033289 22033289 G A ZDHHC20 Missense_Mutation p.R8C 0.29 deleterious(0) probably_damaging(0.961) TCGA-AA-A01P-01 13 23907562 23907562 T - SACS Frame_Shift_Del p.I3485Lfs*10 0.19 TCGA-AA-A01P-01 13 25026653 25026653 A G PARP4 Missense_Mutation p.S969P 0.30 tolerated(0.07) benign(0.017) TCGA-AA-A01P-01 13 26787930 26787930 A - RNF6 3'UTR 0.13 TCGA-AA-A01P-01 13 26789541 26789541 T C RNF6 Missense_Mutation p.R160G 0.10 tolerated(0.25) benign(0.015) TCGA-AA-A01P-01 13 32691540 32691540 T C FRY Missense_Mutation p.Y132H 0.30 tolerated(0.16) possibly_damaging(0.766) TCGA-AA-A01P-01 13 38924319 38924319 C T UFM1 Intron 0.30 TCGA-AA-A01P-01 13 42780220 42780220 G A DGKH Missense_Mutation p.V847M 0.20 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 13 46721129 46721129 T C LCP1 Missense_Mutation p.N363S 0.12 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 13 49777377 49777377 A G FNDC3A Missense_Mutation p.Y1080C 0.20 deleterious(0) probably_damaging(0.997) TCGA-AA-A01P-01 13 49796331 49796331 A G MLNR Missense_Mutation p.I353V 0.16 tolerated(0.18) benign(0.058) TCGA-AA-A01P-01 13 52742401 52742401 T G MRPS31P5 RNA 0.35 TCGA-AA-A01P-01 13 53237241 53237241 T C SUGT1 Silent p.S163S 0.14 TCGA-AA-A01P-01 13 70281809 70281809 G A KLHL1 Missense_Mutation p.T712I 0.21 tolerated(0.07) benign(0.133) TCGA-AA-A01P-01 13 75936160 75936160 A G TBC1D4 Splice_Site p.X360_splice 0.18 TCGA-AA-A01P-01 13 98674118 98674118 A G IPO5 3'UTR 0.23 TCGA-AA-A01P-01 13 98829514 98829514 G A RNF113B 5'UTR 0.24 TCGA-AA-A01P-01 13 99446967 99446967 C T DOCK9 3'UTR 0.21 TCGA-AA-A01P-01 14 100141458 100141458 G A HHIPL1 Missense_Mutation p.R615Q 0.27 tolerated(0.31) benign(0.202) TCGA-AA-A01P-01 14 100613046 100613046 A C DEGS2 3'UTR 0.22 TCGA-AA-A01P-01 14 104136617 104136617 A G KLC1 Silent p.E328E 0.13 TCGA-AA-A01P-01 14 104642895 104642895 C T KIF26A Missense_Mutation p.A1257V 0.24 tolerated(0.16) benign(0.196) TCGA-AA-A01P-01 14 105419127 105419127 G A AHNAK2 Silent p.S887S 0.22 TCGA-AA-A01P-01 14 105965060 105965060 G A C14orf80 Missense_Mutation p.G353D 0.19 tolerated(0.33) benign(0.237) TCGA-AA-A01P-01 14 21544776 21544776 C A ARHGEF40 Missense_Mutation p.L631I 0.24 tolerated(0.19) benign(0.064) TCGA-AA-A01P-01 14 21762957 21762957 T C RPGRIP1 Silent p.D69D 0.22 TCGA-AA-A01P-01 14 22539432 22539432 C A TRAV22 Missense_Mutation p.Q98K 0.20 deleterious(0.05) benign(0.169) TCGA-AA-A01P-01 14 23457191 23457191 C T C14orf93 Missense_Mutation p.R373H 0.21 deleterious_low_confidence(0) possibly_damaging(0.49) TCGA-AA-A01P-01 14 23845043 23845043 G A IL25 Missense_Mutation p.R163H 0.22 deleterious(0.04) probably_damaging(0.94) TCGA-AA-A01P-01 14 23900139 23900139 A G MYH7 Missense_Mutation p.I289T 0.09 deleterious(0) probably_damaging(0.998) TCGA-AA-A01P-01 14 24035494 24035494 C T AP1G2 Missense_Mutation p.R155H 0.29 deleterious(0.03) benign(0.024) TCGA-AA-A01P-01 14 24532621 24532621 C T LRRC16B Missense_Mutation p.T953I 0.18 tolerated(0.09) benign(0.43) TCGA-AA-A01P-01 14 24647332 24647332 C T REC8 Silent p.R299R 0.23 TCGA-AA-A01P-01 14 24785934 24785934 G A LTB4R 3'UTR 0.29 TCGA-AA-A01P-01 14 29237663 29237663 C T FOXG1 Missense_Mutation p.S393L 0.19 deleterious(0) benign(0.011) TCGA-AA-A01P-01 14 31917483 31917483 G A DTD2 Missense_Mutation p.S120F 0.24 deleterious(0) possibly_damaging(0.797) TCGA-AA-A01P-01 14 42356694 42356694 T G LRFN5 Missense_Mutation p.I289S 0.26 deleterious(0) possibly_damaging(0.824) TCGA-AA-A01P-01 14 45653008 45653008 A T FANCM Missense_Mutation p.N1473I 0.25 deleterious(0) benign(0.372) TCGA-AA-A01P-01 14 47120611 47120611 C A RPL10L Missense_Mutation p.R110M 0.16 deleterious(0) probably_damaging(0.977) TCGA-AA-A01P-01 14 50074572 50074572 G A LRR1 Missense_Mutation p.C246Y 0.23 deleterious(0) probably_damaging(0.972) TCGA-AA-A01P-01 14 50298931 50298931 A G NEMF Missense_Mutation p.I267T 0.16 deleterious(0.01) possibly_damaging(0.456) TCGA-AA-A01P-01 14 55236926 55236926 T A SAMD4A Nonsense_Mutation p.Y567* 0.22 TCGA-AA-A01P-01 14 55636165 55636165 C T DLGAP5 Silent p.E500E 0.24 TCGA-AA-A01P-01 14 58831663 58831663 C T ARID4A Silent p.I952I 0.12 TCGA-AA-A01P-01 14 59113811 59113811 C T DACT1 Missense_Mutation p.R824C 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 14 61788802 61788802 C T PRKCH 5'UTR 0.16 TCGA-AA-A01P-01 14 63842784 63842784 T - PPP2R5E Frame_Shift_Del p.K449Nfs*7 0.18 TCGA-AA-A01P-01 14 64473762 64473762 A - SYNE2 Frame_Shift_Del p.K1468Nfs*3 0.20 TCGA-AA-A01P-01 14 64934967 64934967 A G AKAP5 5'UTR 0.26 TCGA-AA-A01P-01 14 64954215 64954216 - C ZBTB25 Frame_Shift_Ins p.E245Gfs*4 0.16 TCGA-AA-A01P-01 14 69262544 69262545 GA - ZFP36L1 5'Flank 0.14 TCGA-AA-A01P-01 14 73581010 73581010 C T RBM25 Missense_Mutation p.S803L 0.11 possibly_damaging(0.637) TCGA-AA-A01P-01 14 74417181 74417181 C A COQ6 Missense_Mutation p.A49D 0.18 deleterious(0) probably_damaging(0.953) TCGA-AA-A01P-01 14 75019600 75019600 C T LTBP2 Missense_Mutation p.R396H 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 14 75295972 75295972 G A YLPM1 Missense_Mutation p.A2074T 0.23 possibly_damaging(0.895) TCGA-AA-A01P-01 14 75551301 75551301 A C NEK9 Missense_Mutation p.L969R 0.17 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-AA-A01P-01 14 77492838 77492838 C A IRF2BPL Missense_Mutation p.S433I 0.19 deleterious(0) unknown(0) TCGA-AA-A01P-01 14 77493473 77493473 C T IRF2BPL Silent p.A221A 0.28 TCGA-AA-A01P-01 14 81609889 81609889 C T TSHR Missense_Mutation p.T496M 0.28 tolerated(0.05) possibly_damaging(0.636) TCGA-AA-A01P-01 14 86089051 86089051 C T FLRT2 Missense_Mutation p.P398L 0.11 tolerated(0.37) benign(0) TCGA-AA-A01P-01 14 89087152 89087152 G A EML5 Missense_Mutation p.S1774F 0.16 deleterious(0) probably_damaging(0.94) TCGA-AA-A01P-01 14 89128020 89128020 T C EML5 Missense_Mutation p.K1218R 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A01P-01 14 89307486 89307486 C A TTC8 Silent p.A145A 0.20 TCGA-AA-A01P-01 14 90650622 90650622 C T KCNK13 Nonsense_Mutation p.R168* 0.20 TCGA-AA-A01P-01 14 91360888 91360890 CTC - RPS6KA5 In_Frame_Del p.G504del 0.24 TCGA-AA-A01P-01 14 91642315 91642315 C T C14orf159 Silent p.Y215Y 0.22 TCGA-AA-A01P-01 14 91806315 91806315 G A CCDC88C Silent p.D179D 0.21 TCGA-AA-A01P-01 15 101434361 101434361 G A ALDH1A3 Intron 0.17 TCGA-AA-A01P-01 15 23889120 23889120 C T MAGEL2 3'UTR 0.21 TCGA-AA-A01P-01 15 27128584 27128584 G A GABRA5 Missense_Mutation p.S126N 0.15 tolerated(0.09) probably_damaging(0.998) TCGA-AA-A01P-01 15 33023674 33023674 A G GREM1 3'UTR 0.08 TCGA-AA-A01P-01 15 34356970 34356970 A G CHRM5 3'UTR 0.15 TCGA-AA-A01P-01 15 40558061 40558061 G A PAK6 Missense_Mutation p.A75T 0.28 tolerated(0.65) benign(0) TCGA-AA-A01P-01 15 40564567 40564567 G A PAK6 Missense_Mutation p.R334H 0.17 tolerated(0.14) benign(0) TCGA-AA-A01P-01 15 40648424 40648424 C - PHGR1 Frame_Shift_Del p.H59Tfs*49 0.13 TCGA-AA-A01P-01 15 41192320 41192320 G A VPS18 Missense_Mutation p.R435H 0.22 tolerated(0.12) benign(0.153) TCGA-AA-A01P-01 15 41988452 41988455 CAAA - MGA Frame_Shift_Del p.N416Vfs*7 0.12 TCGA-AA-A01P-01 15 43244641 43244641 G - UBR1 Frame_Shift_Del p.P1614Hfs*32 0.19 TCGA-AA-A01P-01 15 51742374 51742374 A G DMXL2 Silent p.D2952D 0.16 TCGA-AA-A01P-01 15 57554312 57554321 CTCTGTCAGT - TCF12 Frame_Shift_Del p.V498Mfs*18 0.09 TCGA-AA-A01P-01 15 59179726 59179726 C T SLTM Missense_Mutation p.V797I 0.21 tolerated(0.13) probably_damaging(0.95) TCGA-AA-A01P-01 15 59359141 59359141 T C RNF111 Silent p.H515H 0.24 TCGA-AA-A01P-01 15 59445908 59445908 G A MYO1E Silent p.S987S 0.17 TCGA-AA-A01P-01 15 63481894 63481894 T C RAB8B Missense_Mutation p.L24P 0.07 deleterious(0) probably_damaging(0.994) TCGA-AA-A01P-01 15 63950778 63950778 G T HERC1 Silent p.T3188T 0.23 TCGA-AA-A01P-01 15 64689826 64689826 G A TRIP4 Missense_Mutation p.V143I 0.05 tolerated(0.44) benign(0.001) TCGA-AA-A01P-01 15 65489979 65489979 C A CILP Missense_Mutation p.R882M 0.24 deleterious(0.02) benign(0.039) TCGA-AA-A01P-01 15 66625346 66625346 G A DIS3L Missense_Mutation p.R954K 0.35 tolerated(0.54) benign(0.002) TCGA-AA-A01P-01 15 68937509 68937509 G A CORO2B Missense_Mutation p.R9H 0.27 tolerated(0.26) benign(0.005) TCGA-AA-A01P-01 15 69715529 69715529 A G KIF23 Missense_Mutation p.I199V 0.07 tolerated(0.27) benign(0.348) TCGA-AA-A01P-01 15 72227681 72227681 C T MYO9A Splice_Site p.X841_splice 0.18 TCGA-AA-A01P-01 15 73615650 73615650 C T HCN4 Silent p.P928P 0.19 TCGA-AA-A01P-01 15 75641498 75641498 T - NEIL1 Frame_Shift_Del p.Q86Sfs*67 0.14 TCGA-AA-A01P-01 15 80762584 80762584 C T ARNT2 Missense_Mutation p.R74C 0.10 deleterious(0) possibly_damaging(0.898) TCGA-AA-A01P-01 15 81631844 81631844 A G TMC3 Missense_Mutation p.S616P 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 15 83434691 83434691 C - FSD2 Frame_Shift_Del p.G549Afs*4 0.21 TCGA-AA-A01P-01 15 83710482 83710482 G A BTBD1 Missense_Mutation p.A287V 0.15 tolerated(0.35) benign(0.057) TCGA-AA-A01P-01 15 86124883 86124884 - C AKAP13 Frame_Shift_Ins p.T1197Hfs*9 0.21 TCGA-AA-A01P-01 15 89381931 89381931 G A ACAN Silent p.P36P 0.19 TCGA-AA-A01P-01 15 89388776 89388776 G - ACAN Frame_Shift_Del p.G366Vfs*10 0.21 TCGA-AA-A01P-01 15 89864378 89864378 G A POLG Silent p.D904D 0.13 TCGA-AA-A01P-01 15 90185603 90185603 C T KIF7 Missense_Mutation p.S742N 0.19 deleterious(0.01) possibly_damaging(0.686) TCGA-AA-A01P-01 16 1510843 1510843 C T CLCN7 Missense_Mutation p.G153D 0.16 tolerated(0.3) benign(0.01) TCGA-AA-A01P-01 16 15123907 15123907 G A PDXDC1 Missense_Mutation p.A465T 0.10 tolerated(0.06) benign(0.033) TCGA-AA-A01P-01 16 16208875 16208875 C A ABCC1 Missense_Mutation p.A1111D 0.10 deleterious(0) probably_damaging(0.956) TCGA-AA-A01P-01 16 17211766 17211766 T C XYLT1 Missense_Mutation p.E765G 0.14 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 16 19126666 19126666 C T ITPRIPL2 Missense_Mutation p.R295C 0.16 deleterious(0) probably_damaging(0.973) TCGA-AA-A01P-01 16 19648948 19648948 C T C16orf62 Silent p.H645H 0.23 TCGA-AA-A01P-01 16 2096133 2096133 G - NTHL1 Frame_Shift_Del p.P125Qfs*12 0.25 TCGA-AA-A01P-01 16 2111921 2111921 C T TSC2 Missense_Mutation p.T390M 0.26 deleterious(0) possibly_damaging(0.874) TCGA-AA-A01P-01 16 23415033 23415033 C T COG7 Silent p.L595L 0.15 TCGA-AA-A01P-01 16 2345655 2345655 C T ABCA3 Missense_Mutation p.A784T 0.15 deleterious(0) probably_damaging(0.962) TCGA-AA-A01P-01 16 23695329 23695329 C A PLK1 Missense_Mutation p.L319M 0.22 deleterious(0) probably_damaging(0.998) TCGA-AA-A01P-01 16 23706242 23706242 C T ERN2 Missense_Mutation p.R684Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 16 23707286 23707286 G A ERN2 Silent p.T561T 0.22 TCGA-AA-A01P-01 16 24881272 24881272 C A SLC5A11 Silent p.G86G 0.08 TCGA-AA-A01P-01 16 2514575 2514575 C T C16orf59 Missense_Mutation p.P403L 0.08 deleterious(0.04) benign(0.011) TCGA-AA-A01P-01 16 27448932 27448932 C T IL21R Silent p.D92D 0.22 TCGA-AA-A01P-01 16 28074454 28074454 A C GSG1L Missense_Mutation p.F98V 0.25 deleterious(0.04) benign(0.209) TCGA-AA-A01P-01 16 2854914 2854914 G T PRSS41 Splice_Site 0.21 TCGA-AA-A01P-01 16 28845724 28845724 C T ATXN2L Missense_Mutation p.R745W 0.22 deleterious(0.02) benign(0.011) TCGA-AA-A01P-01 16 29678349 29678350 - G SPN 3'UTR 0.12 TCGA-AA-A01P-01 16 29994077 29994077 G A TAOK2 Missense_Mutation p.R285Q 0.23 deleterious(0) possibly_damaging(0.88) TCGA-AA-A01P-01 16 30616047 30616047 G A ZNF689 Silent p.C347C 0.14 TCGA-AA-A01P-01 16 30680212 30680212 C - FBRS Frame_Shift_Del p.P761Lfs*63 0.13 TCGA-AA-A01P-01 16 30770989 30770989 A - C16orf93 Frame_Shift_Del p.C176Afs*51 0.15 TCGA-AA-A01P-01 16 30778121 30778121 G A RNF40 Silent p.T451T 0.14 TCGA-AA-A01P-01 16 31090057 31090058 CT - ZNF646 Frame_Shift_Del p.S805Ffs*20 0.20 TCGA-AA-A01P-01 16 31142107 31142107 C A KAT8 Missense_Mutation p.L400M 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-A01P-01 16 31447606 31447606 C T ZNF843 Missense_Mutation p.A189T 0.19 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-AA-A01P-01 16 3297099 3297099 C T MEFV Missense_Mutation p.V502I 0.26 tolerated(0.19) benign(0.012) TCGA-AA-A01P-01 16 396792 396792 G - AXIN1 Frame_Shift_Del p.T79Pfs*5 0.33 TCGA-AA-A01P-01 16 49660124 49660124 C A ZNF423 Missense_Mutation p.E1178D 0.19 tolerated(0.42) benign(0.028) TCGA-AA-A01P-01 16 53337937 53337937 G A CHD9 Missense_Mutation p.A2007T 0.23 benign(0.044) TCGA-AA-A01P-01 16 55905602 55905602 A G CES5A Missense_Mutation p.S147P 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 16 56700795 56700795 G A MT1G Missense_Mutation p.A61V 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-AA-A01P-01 16 57714447 57714447 A T GPR97 Missense_Mutation p.I267F 0.24 tolerated(0.08) benign(0.006) TCGA-AA-A01P-01 16 65016045 65016045 T C CDH11 Missense_Mutation p.S387G 0.19 tolerated(0.33) benign(0.054) TCGA-AA-A01P-01 16 66976106 66976106 G A CES2 Silent p.A476A 0.18 TCGA-AA-A01P-01 16 67221612 67221612 G A EXOC3L1 Missense_Mutation p.P186S 0.29 tolerated(0.57) benign(0.119) TCGA-AA-A01P-01 16 67405099 67405099 C T LRRC36 Missense_Mutation p.A483V 0.18 deleterious_low_confidence(0.05) benign(0.007) TCGA-AA-A01P-01 16 67709316 67709316 C T GFOD2 Silent p.P300P 0.22 TCGA-AA-A01P-01 16 67914054 67914054 C A EDC4 Missense_Mutation p.R678S 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-AA-A01P-01 16 69154400 69154400 T C CHTF8 Silent p.A98A 0.15 TCGA-AA-A01P-01 16 72094815 72094815 C A HP 3'UTR 0.08 TCGA-AA-A01P-01 16 72130267 72130269 AAG - DHX38 In_Frame_Del p.K73del 0.26 TCGA-AA-A01P-01 16 74528731 74528731 T C GLG1 Splice_Site p.X327_splice 0.07 TCGA-AA-A01P-01 16 77759352 77759352 G A NUDT7 Silent p.K20K 0.20 TCGA-AA-A01P-01 16 77822729 77822729 C T VAT1L Silent p.F50F 0.13 TCGA-AA-A01P-01 16 81094655 81094655 G A C16orf46 3'UTR 0.22 TCGA-AA-A01P-01 16 81942093 81942093 G A PLCG2 Missense_Mutation p.E544K 0.15 deleterious(0) probably_damaging(0.921) TCGA-AA-A01P-01 16 84005711 84005711 T C NECAB2 Intron 0.21 TCGA-AA-A01P-01 16 84520507 84520507 G T TLDC1 Missense_Mutation p.L230M 0.17 deleterious(0) probably_damaging(0.916) TCGA-AA-A01P-01 16 84812525 84812525 C T USP10 Missense_Mutation p.A745V 0.23 deleterious(0) probably_damaging(0.977) TCGA-AA-A01P-01 16 87446685 87446685 C T ZCCHC14 Missense_Mutation p.D437N 0.14 deleterious(0.02) probably_damaging(0.913) TCGA-AA-A01P-01 16 88503003 88503003 G A ZNF469 Missense_Mutation p.R3014H 0.20 benign(0) TCGA-AA-A01P-01 16 89348566 89348568 TCT - ANKRD11 In_Frame_Del p.K1461del 0.16 TCGA-AA-A01P-01 16 9017151 9017151 T G USP7 Missense_Mutation p.M102L 0.19 deleterious(0.03) benign(0.051) TCGA-AA-A01P-01 16 9934563 9934563 G A GRIN2A Missense_Mutation p.T531M 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 17 10307889 10307889 A C MYH8 Missense_Mutation p.C816G 0.21 deleterious(0) benign(0.111) TCGA-AA-A01P-01 17 12626277 12626278 - A MYOCD Frame_Shift_Ins p.N125Kfs*16 0.18 TCGA-AA-A01P-01 17 18168038 18168038 C T MIEF2 Missense_Mutation p.A453V 0.24 tolerated(0.37) benign(0.01) TCGA-AA-A01P-01 17 18205981 18205981 C T TOP3A Missense_Mutation p.V186I 0.35 tolerated(0.97) benign(0.009) TCGA-AA-A01P-01 17 18243476 18243476 A G SHMT1 Missense_Mutation p.I232T 0.24 deleterious(0.02) probably_damaging(0.909) TCGA-AA-A01P-01 17 18344800 18344800 C T KRT16P1 RNA 0.21 TCGA-AA-A01P-01 17 18630894 18630894 T G TRIM16L Silent p.A8A 0.20 TCGA-AA-A01P-01 17 25910117 25910117 C T KSR1 Silent p.D185D 0.27 TCGA-AA-A01P-01 17 26695040 26695040 G A VTN Silent p.H340H 0.28 TCGA-AA-A01P-01 17 26945882 26945882 C T KIAA0100 Missense_Mutation p.R1917Q 0.29 tolerated(0.45) benign(0.017) TCGA-AA-A01P-01 17 27014352 27014352 G A SUPT6H Missense_Mutation p.A957T 0.21 tolerated(0.42) benign(0.154) TCGA-AA-A01P-01 17 27413959 27413959 C T MYO18A Missense_Mutation p.E1903K 0.18 deleterious(0.01) possibly_damaging(0.684) TCGA-AA-A01P-01 17 27448680 27448680 G A MYO18A Missense_Mutation p.S419F 0.18 deleterious(0) possibly_damaging(0.575) TCGA-AA-A01P-01 17 27493709 27493709 C T MYO18A Missense_Mutation p.D84N 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.612) TCGA-AA-A01P-01 17 27902332 27902332 C A GIT1 Silent p.R670R 0.20 TCGA-AA-A01P-01 17 29162987 29162987 G A ATAD5 Missense_Mutation p.A630T 0.22 tolerated(0.14) benign(0.023) TCGA-AA-A01P-01 17 3030635 3030635 C A OR1G1 Missense_Mutation p.A71S 0.20 deleterious(0.01) benign(0.027) TCGA-AA-A01P-01 17 33849297 33849297 C A SLFN12L Splice_Site p.X34_splice 0.23 TCGA-AA-A01P-01 17 34257227 34257227 G A RDM1 Silent p.G43G 0.15 TCGA-AA-A01P-01 17 34415998 34415998 C T CCL3 3'UTR 0.06 TCGA-AA-A01P-01 17 35300347 35300347 G A LHX1 Silent p.S380S 0.22 TCGA-AA-A01P-01 17 35734837 35734837 C T C17orf78 Nonsense_Mutation p.R27* 0.21 TCGA-AA-A01P-01 17 37649059 37649059 C T CDK12 Missense_Mutation p.R722C 0.16 probably_damaging(0.964) TCGA-AA-A01P-01 17 38434442 38434442 C A WIPF2 Missense_Mutation p.R430S 0.22 deleterious(0.04) probably_damaging(0.995) TCGA-AA-A01P-01 17 39596802 39596802 C T KRT38 Silent p.Q124Q 0.26 TCGA-AA-A01P-01 17 39890466 39890466 C T HAP1 Missense_Mutation p.G141R 0.18 deleterious(0.02) probably_damaging(0.98) TCGA-AA-A01P-01 17 39974767 39974767 G A FKBP10 Missense_Mutation p.E239K 0.22 tolerated(0.08) probably_damaging(0.987) TCGA-AA-A01P-01 17 40174474 40174474 G A NKIRAS2 Missense_Mutation p.R51Q 0.23 tolerated(0.07) possibly_damaging(0.746) TCGA-AA-A01P-01 17 40275266 40275266 C T HSPB9 Missense_Mutation p.A133V 0.29 tolerated(0.39) benign(0.156) TCGA-AA-A01P-01 17 4088218 4088218 C T ANKFY1 Missense_Mutation p.A574T 0.28 tolerated(0.47) benign(0.038) TCGA-AA-A01P-01 17 41909280 41909280 C T MPP3 5'UTR 0.11 TCGA-AA-A01P-01 17 41955155 41955155 C A MPP2 3'UTR 0.19 TCGA-AA-A01P-01 17 42254847 42254847 A - ASB16 Intron 0.14 TCGA-AA-A01P-01 17 42855538 42855538 T C ADAM11 Missense_Mutation p.I735T 0.20 tolerated(0.07) probably_damaging(0.988) TCGA-AA-A01P-01 17 43013401 43013401 T C KIF18B Silent p.S104S 0.18 TCGA-AA-A01P-01 17 43215357 43215357 T C ACBD4 Splice_Site p.X229_splice 0.22 TCGA-AA-A01P-01 17 43923141 43923141 G T SPPL2C Missense_Mutation p.G290V 0.20 tolerated(0.06) possibly_damaging(0.876) TCGA-AA-A01P-01 17 45258949 45258949 C T CDC27 Missense_Mutation p.A28T 0.17 deleterious(0) probably_damaging(0.988) TCGA-AA-A01P-01 17 45451978 45451978 A - EFCAB13 Frame_Shift_Del p.S342Afs*25 0.20 TCGA-AA-A01P-01 17 45773485 45773485 T C TBKBP1 Missense_Mutation p.S3P 0.15 deleterious(0) probably_damaging(0.915) TCGA-AA-A01P-01 17 4636496 4636496 A T MED11 3'UTR 0.07 TCGA-AA-A01P-01 17 46709870 46709872 TGT - MIR196A1 RNA 0.35 TCGA-AA-A01P-01 17 47241556 47241556 C T B4GALNT2 Silent p.T351T 0.21 TCGA-AA-A01P-01 17 4804421 4804421 G A CHRNE Silent p.T222T 0.07 TCGA-AA-A01P-01 17 4927054 4927054 G A KIF1C Missense_Mutation p.D974N 0.23 tolerated_low_confidence(0.32) possibly_damaging(0.821) TCGA-AA-A01P-01 17 5042861 5042861 G - USP6 Frame_Shift_Del p.G465Afs*41 0.21 TCGA-AA-A01P-01 17 51901016 51901016 C - KIF2B Frame_Shift_Del p.P209Rfs*10 0.23 TCGA-AA-A01P-01 17 56327031 56327031 C T LPO Missense_Mutation p.T183M 0.23 tolerated(0.12) benign(0.189) TCGA-AA-A01P-01 17 56434883 56434883 C T RNF43 Missense_Mutation p.A752T 0.25 tolerated_low_confidence(0.46) benign(0.002) TCGA-AA-A01P-01 17 56599309 56599309 C T SEPT4 Intron 0.09 TCGA-AA-A01P-01 17 56833279 56833279 C T PPM1E 5'UTR 0.24 TCGA-AA-A01P-01 17 58734197 58734197 G A PPM1D Missense_Mutation p.V419I 0.22 tolerated(0.51) benign(0.002) TCGA-AA-A01P-01 17 60879073 60879073 C T MARCH10 Silent p.R8R 0.20 TCGA-AA-A01P-01 17 61660984 61660984 G A DCAF7 Intron 0.22 TCGA-AA-A01P-01 17 63532568 63532568 G - AXIN2 Frame_Shift_Del p.R671Afs*18 0.20 TCGA-AA-A01P-01 17 63533625 63533625 G A AXIN2 Missense_Mutation p.T510M 0.08 tolerated(0.16) benign(0.112) TCGA-AA-A01P-01 17 64880813 64880813 G A CACNG5 Intron 0.20 TCGA-AA-A01P-01 17 650869 650869 A G GEMIN4 Silent p.H138H 0.21 TCGA-AA-A01P-01 17 6556031 6556031 A C C17orf100 3'UTR 0.14 TCGA-AA-A01P-01 17 6599208 6599208 C T SLC13A5 Missense_Mutation p.A298T 0.14 deleterious(0.02) benign(0.032) TCGA-AA-A01P-01 17 66265266 66265267 TG - SLC16A6 Frame_Shift_Del p.H514Qfs*39 0.17 TCGA-AA-A01P-01 17 66303434 66303434 G - ARSG 5'UTR 0.19 TCGA-AA-A01P-01 17 6674283 6674283 C T XAF1 Missense_Mutation p.P277S 0.12 deleterious(0) probably_damaging(0.959) TCGA-AA-A01P-01 17 67513689 67513689 C T MAP2K6 Nonsense_Mutation p.R61* 0.29 TCGA-AA-A01P-01 17 6905107 6905107 C A ALOX12 Missense_Mutation p.P380T 0.17 deleterious(0) probably_damaging(0.931) TCGA-AA-A01P-01 17 7139328 7139328 A G PHF23 Silent p.T306T 0.24 TCGA-AA-A01P-01 17 7216434 7216434 G A GPS2 Missense_Mutation p.R272C 0.24 deleterious_low_confidence(0.04) benign(0) TCGA-AA-A01P-01 17 73257679 73257679 C T GGA3 5'UTR 0.22 TCGA-AA-A01P-01 17 73498235 73498236 TC - CASKIN2 Frame_Shift_Del p.E973Dfs*18 0.12 TCGA-AA-A01P-01 17 74004641 74004641 C T EVPL Missense_Mutation p.A1549T 0.24 tolerated(0.14) benign(0.025) TCGA-AA-A01P-01 17 74017566 74017566 C T EVPL Missense_Mutation p.V332M 0.22 deleterious(0.03) benign(0.104) TCGA-AA-A01P-01 17 7460431 7460431 G A TNFSF12 Intron 0.21 TCGA-AA-A01P-01 17 74730948 74730948 A - SRSF2 3'UTR 0.13 TCGA-AA-A01P-01 17 75878144 75878144 T C FLJ45079 Missense_Mutation p.H110R 0.22 benign(0.402) TCGA-AA-A01P-01 17 76064000 76064000 A - TNRC6C Frame_Shift_Del p.K923Rfs*3 0.13 TCGA-AA-A01P-01 17 76235340 76235340 G T TMEM235 Missense_Mutation p.Q215H 0.33 deleterious_low_confidence(0.01) benign(0.001) TCGA-AA-A01P-01 17 7751170 7751170 C T KDM6B Missense_Mutation p.R522C 0.22 unknown(0) TCGA-AA-A01P-01 17 7788211 7788212 - GAG CHD3 In_Frame_Ins p.E35dup 0.17 TCGA-AA-A01P-01 17 78293215 78293215 G A RNF213 Intron 0.16 TCGA-AA-A01P-01 17 78327907 78327907 G A RNF213 Missense_Mutation p.R3556H 0.05 probably_damaging(0.971) TCGA-AA-A01P-01 17 7849072 7849072 C T CNTROB Silent p.P587P 0.18 TCGA-AA-A01P-01 17 79219568 79219568 G A SLC38A10 Missense_Mutation p.R1050W 0.06 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 17 79287597 79287597 G A TMEM105 Nonsense_Mutation p.R82* 0.22 TCGA-AA-A01P-01 17 80109479 80109479 G A RP11-1376P16.2 5'Flank 0.22 TCGA-AA-A01P-01 17 80350141 80350141 G A OGFOD3 3'UTR 0.30 TCGA-AA-A01P-01 17 8044536 8044536 G A PER1 Silent p.S1241S 0.11 TCGA-AA-A01P-01 17 8138506 8138506 G A CTC1 Missense_Mutation p.S435F 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 18 19996093 19996093 G A CTAGE1 Missense_Mutation p.A561V 0.21 deleterious(0) benign(0.016) TCGA-AA-A01P-01 18 21118569 21118569 C - NPC1 Frame_Shift_Del p.G993Efs*4 0.16 TCGA-AA-A01P-01 18 21141322 21141322 A G NPC1 Splice_Site p.X211_splice 0.33 TCGA-AA-A01P-01 18 29340833 29340833 C A SLC25A52 5'UTR 0.27 TCGA-AA-A01P-01 18 43307323 43307323 C T SLC14A1 Silent p.D29D 0.21 TCGA-AA-A01P-01 18 56415076 56415076 C A MALT1 3'UTR 0.20 TCGA-AA-A01P-01 18 63511046 63511046 A C CDH7 Splice_Site p.X328_splice 0.17 TCGA-AA-A01P-01 18 67866668 67866668 A G RTTN Missense_Mutation p.V187A 0.08 deleterious(0) possibly_damaging(0.904) TCGA-AA-A01P-01 18 73000233 73000233 G A TSHZ1 Silent p.T912T 0.12 TCGA-AA-A01P-01 18 751800 751800 A G YES1 Silent p.G92G 0.09 TCGA-AA-A01P-01 18 77105557 77105557 C T ATP9B Missense_Mutation p.R868C 0.19 deleterious(0) possibly_damaging(0.684) TCGA-AA-A01P-01 18 77918373 77918373 G A PARD6G Missense_Mutation p.R138C 0.19 deleterious(0) possibly_damaging(0.586) TCGA-AA-A01P-01 19 10204108 10204108 T C ANGPTL6 Missense_Mutation p.Y380C 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 19 10370287 10370287 C T MRPL4 Intron 0.22 TCGA-AA-A01P-01 19 1051166 1051166 C T ABCA7 Silent p.D899D 0.07 TCGA-AA-A01P-01 19 10689573 10689573 C T AP1M2 Missense_Mutation p.V295I 0.16 tolerated(0.53) benign(0.008) TCGA-AA-A01P-01 19 1074689 1074689 C T HMHA1 Missense_Mutation p.A373V 0.25 deleterious(0.03) benign(0.052) TCGA-AA-A01P-01 19 11039457 11039459 AGG - C19orf52 5'UTR 0.16 TCGA-AA-A01P-01 19 11356364 11356364 G T DOCK6 Missense_Mutation p.L300M 0.22 tolerated(0.23) possibly_damaging(0.542) TCGA-AA-A01P-01 19 11446453 11446453 C T RAB3D Missense_Mutation p.A79T 0.19 deleterious(0) probably_damaging(0.994) TCGA-AA-A01P-01 19 13039175 13039175 G A FARSA Silent p.H274H 0.18 TCGA-AA-A01P-01 19 13221024 13221024 G A TRMT1 Missense_Mutation p.R323C 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 19 13862426 13862426 G T CCDC130 5'UTR 0.38 TCGA-AA-A01P-01 19 14024405 14024405 C T CC2D1A Silent p.T234T 0.18 TCGA-AA-A01P-01 19 14273515 14273515 G A LPHN1 Silent p.S371S 0.05 TCGA-AA-A01P-01 19 14520777 14520777 G A DDX39A Intron 0.27 TCGA-AA-A01P-01 19 14707710 14707710 T C CLEC17A Silent p.N156N 0.06 TCGA-AA-A01P-01 19 15166877 15166877 C T CASP14 Missense_Mutation p.R236W 0.20 deleterious(0) benign(0.33) TCGA-AA-A01P-01 19 15807842 15807842 G A CYP4F12 Missense_Mutation p.A508T 0.26 tolerated(0.18) benign(0.274) TCGA-AA-A01P-01 19 17343433 17343433 C T NR2F6 Missense_Mutation p.A315T 0.17 tolerated(0.25) probably_damaging(0.999) TCGA-AA-A01P-01 19 17531404 17531404 C T MVB12A Missense_Mutation p.P83S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01P-01 19 17953904 17953904 G A JAK3 Silent p.A166A 0.26 TCGA-AA-A01P-01 19 18572572 18572572 G T ELL Missense_Mutation p.A187D 0.22 deleterious(0.01) possibly_damaging(0.735) TCGA-AA-A01P-01 19 18779300 18779300 G A KLHL26 Missense_Mutation p.V365M 0.08 deleterious(0) possibly_damaging(0.804) TCGA-AA-A01P-01 19 19337572 19337572 G T NCAN Silent p.T450T 0.22 TCGA-AA-A01P-01 19 19431920 19431920 G T MAU2 Missense_Mutation p.Q84H 0.21 tolerated(0.38) benign(0.012) TCGA-AA-A01P-01 19 20307896 20307896 G C ZNF486 Missense_Mutation p.C126S 0.14 tolerated(0.05) probably_damaging(0.966) TCGA-AA-A01P-01 19 21991478 21991478 T C ZNF43 Missense_Mutation p.Y454C 0.18 deleterious(0.02) probably_damaging(1) TCGA-AA-A01P-01 19 23544907 23544907 T C ZNF91 Missense_Mutation p.K292E 0.17 deleterious(0.01) benign(0.199) TCGA-AA-A01P-01 19 2434018 2434018 G A LMNB2 Missense_Mutation p.R430C 0.30 deleterious(0) probably_damaging(0.927) TCGA-AA-A01P-01 19 2917491 2917491 A G ZNF57 Missense_Mutation p.Y291C 0.18 tolerated(0.22) probably_damaging(0.923) TCGA-AA-A01P-01 19 33792366 33792366 T C CEBPA Missense_Mutation p.S319G 0.19 tolerated(0.05) benign(0.192) TCGA-AA-A01P-01 19 3532474 3532474 G A FZR1 Silent p.A356A 0.15 TCGA-AA-A01P-01 19 35504481 35504481 C T GRAMD1A Silent p.S252S 0.17 TCGA-AA-A01P-01 19 35633653 35633653 C A FXYD1 3'UTR 0.21 TCGA-AA-A01P-01 19 35753530 35753530 C T LSR Missense_Mutation p.P286L 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 19 36054407 36054407 A G ATP4A Missense_Mutation p.V12A 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.822) TCGA-AA-A01P-01 19 36257685 36257685 C T C19orf55 Silent p.A262A 0.23 TCGA-AA-A01P-01 19 36278511 36278511 C T ARHGAP33 Missense_Mutation p.A854V 0.11 tolerated_low_confidence(0.13) benign(0.005) TCGA-AA-A01P-01 19 36279082 36279082 C T ARHGAP33 Silent p.R1044R 0.18 TCGA-AA-A01P-01 19 38746789 38746789 T C PPP1R14A Missense_Mutation p.Y64C 0.12 deleterious(0) probably_damaging(0.947) TCGA-AA-A01P-01 19 39016093 39016093 C T RYR1 Missense_Mutation p.A3526V 0.21 benign(0.027) TCGA-AA-A01P-01 19 39597658 39597658 C T PAPL Silent p.Y395Y 0.17 TCGA-AA-A01P-01 19 39600831 39600831 C A PAPL 3'UTR 0.42 TCGA-AA-A01P-01 19 39964755 39964755 C T SUPT5H Missense_Mutation p.P882L 0.20 tolerated(0.14) benign(0.018) TCGA-AA-A01P-01 19 4028750 4028750 G T PIAS4 Missense_Mutation p.E235D 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A01P-01 19 40430344 40430345 CA - FCGBP Frame_Shift_Del p.V533Afs*13 0.12 TCGA-AA-A01P-01 19 41132965 41132965 C T LTBP4 Silent p.Y1423Y 0.23 TCGA-AA-A01P-01 19 41351278 41351278 C A CYP2A6 Missense_Mutation p.R361I 0.18 probably_damaging(1) TCGA-AA-A01P-01 19 41709507 41709507 C T CYP2S1 Missense_Mutation p.R377W 0.33 deleterious(0) probably_damaging(0.939) TCGA-AA-A01P-01 19 42474549 42474549 G A ATP1A3 Silent p.G816G 0.20 TCGA-AA-A01P-01 19 42744142 42744142 C T AC006486.9 Missense_Mutation p.A59T 0.11 deleterious(0) probably_damaging(0.991) TCGA-AA-A01P-01 19 42797234 42797234 G A CIC Missense_Mutation p.R1199Q 0.23 possibly_damaging(0.885) TCGA-AA-A01P-01 19 44097409 44097409 C T IRGQ Missense_Mutation p.R214H 0.16 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 19 46027136 46027136 G A VASP Splice_Site p.X304_splice 0.20 TCGA-AA-A01P-01 19 46032283 46032283 G A OPA3 3'UTR 0.27 TCGA-AA-A01P-01 19 46973575 46973575 G A PNMAL1 Missense_Mutation p.R240C 0.20 tolerated(0.07) possibly_damaging(0.835) TCGA-AA-A01P-01 19 46998141 46998141 G A PNMAL2 Silent p.A194A 0.19 TCGA-AA-A01P-01 19 47259843 47259843 G - FKRP Frame_Shift_Del p.A381Qfs*47 0.18 TCGA-AA-A01P-01 19 47260273 47260273 A C FKRP 3'UTR 0.16 TCGA-AA-A01P-01 19 47535589 47535589 C A NPAS1 Missense_Mutation p.L138M 0.24 deleterious(0.04) probably_damaging(0.917) TCGA-AA-A01P-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.14 TCGA-AA-A01P-01 19 48229101 48229101 G A EHD2 Missense_Mutation p.A179T 0.24 deleterious(0) probably_damaging(0.975) TCGA-AA-A01P-01 19 48254315 48254316 - C GLTSCR2 Frame_Shift_Ins p.Q185Pfs*27 0.16 TCGA-AA-A01P-01 19 49238566 49238566 C T RASIP1 Missense_Mutation p.A356T 0.22 tolerated(0.16) benign(0.001) TCGA-AA-A01P-01 19 49952835 49952835 G A PIH1D1 Silent p.P78P 0.19 TCGA-AA-A01P-01 19 50149870 50149870 C A SCAF1 Missense_Mutation p.L117M 0.21 unknown(0) TCGA-AA-A01P-01 19 50309499 50309499 G T AP2A1 Missense_Mutation p.A949S 0.09 tolerated(0.44) benign(0.055) TCGA-AA-A01P-01 19 50387599 50387599 A G TBC1D17 Missense_Mutation p.T406A 0.17 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 19 50412490 50412490 G A NUP62 Missense_Mutation p.P192L 0.18 tolerated(0.08) benign(0.122) TCGA-AA-A01P-01 19 50864955 50864955 G A NAPSA Missense_Mutation p.R145W 0.21 deleterious(0) probably_damaging(0.986) TCGA-AA-A01P-01 19 51135708 51135708 G T SYT3 Missense_Mutation p.A170D 0.11 tolerated(0.41) benign(0.003) TCGA-AA-A01P-01 19 51446718 51446718 C T KLK5 3'UTR 0.26 TCGA-AA-A01P-01 19 51918312 51918312 G A SIGLEC10 Missense_Mutation p.H461Y 0.15 tolerated(0.81) possibly_damaging(0.723) TCGA-AA-A01P-01 19 53302703 53302703 C G ZNF28 3'UTR 0.19 TCGA-AA-A01P-01 19 53473566 53473566 T - ZNF702P RNA 0.14 TCGA-AA-A01P-01 19 53855356 53855356 C T ZNF845 Silent p.F476F 0.20 TCGA-AA-A01P-01 19 53911073 53911073 G T ZNF765 Missense_Mutation p.D89Y 0.19 deleterious(0) possibly_damaging(0.707) TCGA-AA-A01P-01 19 53911214 53911214 G A ZNF765 Missense_Mutation p.V136I 0.09 tolerated(1) benign(0.001) TCGA-AA-A01P-01 19 53911220 53911220 T G ZNF765 Missense_Mutation p.Y138D 0.10 tolerated(0.53) benign(0) TCGA-AA-A01P-01 19 53958096 53958096 C T ZNF761 RNA 0.06 TCGA-AA-A01P-01 19 53958133 53958133 A G ZNF761 RNA 0.07 TCGA-AA-A01P-01 19 53958245 53958245 A G ZNF761 RNA 0.05 TCGA-AA-A01P-01 19 55054848 55054848 C A KIR3DX1 3'UTR 0.16 TCGA-AA-A01P-01 19 55869916 55869916 C T FAM71E2 Missense_Mutation p.E774K 0.07 tolerated(0.61) unknown(0) TCGA-AA-A01P-01 19 56701861 56701861 C T ZSCAN5B Missense_Mutation p.V275I 0.21 tolerated(0.28) benign(0.013) TCGA-AA-A01P-01 19 57176117 57176117 G A ZNF835 Silent p.S150S 0.24 TCGA-AA-A01P-01 19 57641629 57641629 T C USP29 Missense_Mutation p.V529A 0.22 deleterious(0) benign(0.277) TCGA-AA-A01P-01 19 5784410 5784411 CT - PRR22 Frame_Shift_Del p.E57Gfs*39 0.15 TCGA-AA-A01P-01 19 58118456 58118456 C T ZNF530 Silent p.C521C 0.17 TCGA-AA-A01P-01 19 58238765 58238765 G A ZNF671 Silent p.S44S 0.18 TCGA-AA-A01P-01 19 58290959 58290959 A G ZNF586 Missense_Mutation p.H335R 0.21 deleterious(0) probably_damaging(0.998) TCGA-AA-A01P-01 19 58452692 58452692 T C ZNF256 Missense_Mutation p.E495G 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 19 58904413 58904413 G A RPS5 Missense_Mutation p.R60H 0.11 deleterious(0.04) benign(0.039) TCGA-AA-A01P-01 19 59061363 59061363 C T TRIM28 Silent p.R718R 0.22 TCGA-AA-A01P-01 19 59082475 59082475 G A MZF1 Silent p.G94G 0.24 TCGA-AA-A01P-01 19 6387491 6387491 C T GTF2F1 Missense_Mutation p.E136K 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 19 6495605 6495605 G A TUBB4A Missense_Mutation p.A302V 0.32 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-AA-A01P-01 19 6760956 6760956 G A SH2D3A Missense_Mutation p.R38C 0.22 deleterious(0) probably_damaging(0.983) TCGA-AA-A01P-01 19 7505020 7505020 G T ARHGEF18 Missense_Mutation p.R65M 0.25 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AA-A01P-01 19 7660904 7660904 C - CAMSAP3 Frame_Shift_Del p.P11Rfs*7 0.18 TCGA-AA-A01P-01 19 8563904 8563904 T C PRAM1 Missense_Mutation p.K263R 0.08 tolerated(0.28) benign(0.373) TCGA-AA-A01P-01 19 8649831 8649831 C T ADAMTS10 Silent p.T1050T 0.11 TCGA-AA-A01P-01 19 9062792 9062792 G A MUC16 Silent p.D8218D 0.20 TCGA-AA-A01P-01 19 9088255 9088255 G C MUC16 Missense_Mutation p.T1187S 0.13 unknown(0) TCGA-AA-A01P-01 1 100207805 100207805 C A FRRS1 Missense_Mutation p.A120S 0.21 tolerated(0.86) benign(0.001) TCGA-AA-A01P-01 1 103444294 103444294 G A COL11A1 Silent p.G908G 0.20 TCGA-AA-A01P-01 1 109648633 109648633 T C C1orf194 3'UTR 0.17 TCGA-AA-A01P-01 1 109824504 109824504 C T PSRC1 Missense_Mutation p.A86T 0.25 tolerated(0.18) benign(0.037) TCGA-AA-A01P-01 1 110882873 110882873 C - RBM15 Frame_Shift_Del p.P284Lfs*98 0.16 TCGA-AA-A01P-01 1 11300544 11300544 G A MTOR Silent p.D534D 0.20 TCGA-AA-A01P-01 1 113246329 113246329 C T RHOC Silent p.P31P 0.31 TCGA-AA-A01P-01 1 1158682 1158682 G A SDF4 Silent p.S173S 0.09 TCGA-AA-A01P-01 1 116675853 116675853 T C MAB21L3 Missense_Mutation p.V319A 0.17 tolerated(0.05) benign(0.168) TCGA-AA-A01P-01 1 118462816 118462816 T - GDAP2 Frame_Shift_Del p.V56Wfs*11 0.18 TCGA-AA-A01P-01 1 120165563 120165563 C T ZNF697 Missense_Mutation p.G468D 0.22 tolerated(0.41) benign(0.231) TCGA-AA-A01P-01 1 1289876 1289876 C T MXRA8 Silent p.A321A 0.26 TCGA-AA-A01P-01 1 1354370 1354370 C A ANKRD65 3'UTR 0.19 TCGA-AA-A01P-01 1 145473762 145473762 C T ANKRD34A Missense_Mutation p.T145I 0.22 deleterious(0) possibly_damaging(0.827) TCGA-AA-A01P-01 1 1458218 1458218 C T ATAD3A Missense_Mutation p.P330L 0.24 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 1 147096313 147096313 C T BCL9 Silent p.G1278G 0.19 TCGA-AA-A01P-01 1 150786602 150786602 C T ARNT Silent p.S688S 0.21 TCGA-AA-A01P-01 1 152082206 152082206 G A TCHH Missense_Mutation p.R1163C 0.22 unknown(0) TCGA-AA-A01P-01 1 153409591 153409591 G T S100A7L2 Silent p.T94T 0.19 TCGA-AA-A01P-01 1 153598863 153598863 C T S100A13 Missense_Mutation p.R29Q 0.27 tolerated(0.51) benign(0.044) TCGA-AA-A01P-01 1 153790563 153790563 G A GATAD2B Missense_Mutation p.R228W 0.23 deleterious(0) possibly_damaging(0.582) TCGA-AA-A01P-01 1 154920665 154920665 T C PBXIP1 Missense_Mutation p.N196S 0.20 tolerated(0.15) probably_damaging(0.998) TCGA-AA-A01P-01 1 155051478 155051478 C T EFNA3 Silent p.L21L 0.25 TCGA-AA-A01P-01 1 155174851 155174851 C A THBS3 Missense_Mutation p.Q181H 0.29 deleterious(0.01) benign(0.104) TCGA-AA-A01P-01 1 155264938 155264938 G A PKLR Silent p.D221D 0.16 TCGA-AA-A01P-01 1 155317683 155317683 G A ASH1L Missense_Mutation p.R2523C 0.11 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-AA-A01P-01 1 155823107 155823107 A G GON4L Silent p.P155P 0.10 TCGA-AA-A01P-01 1 156756510 156756510 G A PRCC Silent p.S209S 0.14 TCGA-AA-A01P-01 1 156926356 156926356 G A ARHGEF11 Silent p.S509S 0.21 TCGA-AA-A01P-01 1 157068577 157068577 G A ETV3L Missense_Mutation p.A136V 0.22 tolerated(0.06) benign(0.001) TCGA-AA-A01P-01 1 158641935 158641935 G A SPTA1 Missense_Mutation p.R468C 0.39 deleterious(0.03) benign(0.072) TCGA-AA-A01P-01 1 158669532 158669532 T - OR6K2 Frame_Shift_Del p.K304Sfs*3 0.19 TCGA-AA-A01P-01 1 158735815 158735815 G T OR6N1 Missense_Mutation p.Q220K 0.22 tolerated(0.34) benign(0.004) TCGA-AA-A01P-01 1 159900501 159900501 G A IGSF9 Silent p.I598I 0.22 TCGA-AA-A01P-01 1 160000378 160000378 G T PIGM Missense_Mutation p.N384K 0.06 deleterious(0) probably_damaging(0.997) TCGA-AA-A01P-01 1 160011738 160011738 G A KCNJ10 Silent p.C195C 0.20 TCGA-AA-A01P-01 1 162467810 162467810 C T UHMK1 Missense_Mutation p.A7V 0.26 tolerated_low_confidence(0.37) benign(0.004) TCGA-AA-A01P-01 1 165182977 165182977 C T LMX1A Silent p.K190K 0.26 TCGA-AA-A01P-01 1 166925999 166925999 T - ILDR2 Frame_Shift_Del p.N157Mfs*117 0.18 TCGA-AA-A01P-01 1 166987188 166987188 C T MAEL Missense_Mutation p.R345C 0.19 deleterious(0.05) probably_damaging(0.994) TCGA-AA-A01P-01 1 167038173 167038173 C T GPA33 Missense_Mutation p.R134H 0.21 tolerated(0.14) benign(0.051) TCGA-AA-A01P-01 1 16727124 16727124 T C SPATA21 Intron 0.19 TCGA-AA-A01P-01 1 171759661 171759661 C T METTL13 Missense_Mutation p.P460L 0.22 deleterious(0.02) benign(0.011) TCGA-AA-A01P-01 1 1749278 1749279 GA - GNB1 Frame_Shift_Del p.Q32Dfs*46 0.16 TCGA-AA-A01P-01 1 176525693 176525693 C A PAPPA2 Missense_Mutation p.L79I 0.16 tolerated_low_confidence(0.08) possibly_damaging(0.56) TCGA-AA-A01P-01 1 179603695 179603695 A - TDRD5 Frame_Shift_Del p.K412Nfs*17 0.11 TCGA-AA-A01P-01 1 179621326 179621326 T C TDRD5 Silent p.R718R 0.04 TCGA-AA-A01P-01 1 182908554 182908554 A C SHCBP1L Intron 0.18 TCGA-AA-A01P-01 1 1848428 1848428 C T CALML6 Silent p.N138N 0.06 TCGA-AA-A01P-01 1 186310226 186310226 G A TPR Silent p.S1318S 0.19 TCGA-AA-A01P-01 1 18703464 18703464 G A IGSF21 Silent p.T424T 0.09 TCGA-AA-A01P-01 1 190129900 190129900 C T BRINP3 Missense_Mutation p.S361N 0.12 tolerated(0.06) benign(0.002) TCGA-AA-A01P-01 1 19243501 19243501 G A IFFO2 Silent p.S333S 0.17 TCGA-AA-A01P-01 1 19596103 19596103 C A AKR7L Intron 0.18 TCGA-AA-A01P-01 1 196758765 196758765 C T CFHR3 Intron 0.21 TCGA-AA-A01P-01 1 196758869 196758869 C G CFHR3 Intron 0.20 TCGA-AA-A01P-01 1 19810801 19810801 G T CAPZB Intron 0.07 TCGA-AA-A01P-01 1 201380597 201380597 C T TNNI1 Missense_Mutation p.R115Q 0.24 deleterious(0.01) possibly_damaging(0.485) TCGA-AA-A01P-01 1 202698060 202698060 G T KDM5B 3'UTR 0.33 TCGA-AA-A01P-01 1 203148681 203148681 G A CHI3L1 Silent p.G348G 0.23 TCGA-AA-A01P-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.18 TCGA-AA-A01P-01 1 205801880 205801880 C T PM20D1 Silent p.T377T 0.11 TCGA-AA-A01P-01 1 20676702 20676702 G A VWA5B1 Missense_Mutation p.E983K 0.12 tolerated(0.06) benign(0.04) TCGA-AA-A01P-01 1 207934672 207934672 A G CD46 Missense_Mutation p.D185G 0.17 deleterious(0) possibly_damaging(0.584) TCGA-AA-A01P-01 1 209974588 209974588 A - IRF6 Frame_Shift_Del p.F57Lfs*6 0.13 TCGA-AA-A01P-01 1 214171555 214171555 C T PROX1 Silent p.C559C 0.15 TCGA-AA-A01P-01 1 214531307 214531307 G A PTPN14 Silent p.Y1174Y 0.04 TCGA-AA-A01P-01 1 21771474 21771474 C T NBPF3 5'UTR 0.18 TCGA-AA-A01P-01 1 21930228 21930228 G A RAP1GAP Intron 0.19 TCGA-AA-A01P-01 1 224001972 224001972 G A TP53BP2 Missense_Mutation p.R87C 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-A01P-01 1 224377794 224377794 A G DEGS1 Missense_Mutation p.I200V 0.15 tolerated(0.61) benign(0.012) TCGA-AA-A01P-01 1 22446807 22446807 C T WNT4 Silent p.P264P 0.26 TCGA-AA-A01P-01 1 228509564 228509564 C T OBSCN Missense_Mutation p.R5965C 0.13 probably_damaging(0.992) TCGA-AA-A01P-01 1 229434789 229434789 G A RAB4A Missense_Mutation p.A171T 0.17 tolerated(0.07) benign(0.098) TCGA-AA-A01P-01 1 230492905 230492905 G A PGBD5 Missense_Mutation p.T96M 0.14 tolerated(0.11) benign(0.022) TCGA-AA-A01P-01 1 231349627 231349627 C A TRIM67 Silent p.L730L 0.15 TCGA-AA-A01P-01 1 23420333 23420333 A C LUZP1 Missense_Mutation p.L141R 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 1 236157115 236157115 G A NID1 Missense_Mutation p.A862V 0.11 tolerated(0.29) benign(0.003) TCGA-AA-A01P-01 1 236716900 236716900 G A HEATR1 Missense_Mutation p.T2073M 0.20 tolerated(0.29) benign(0.097) TCGA-AA-A01P-01 1 242253138 242253138 G A PLD5 3'UTR 0.17 TCGA-AA-A01P-01 1 247492627 247492627 A C ZNF496 Missense_Mutation p.L85R 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 1 247726901 247726901 G A GCSAML Missense_Mutation p.M33I 0.15 tolerated(0.26) benign(0.053) TCGA-AA-A01P-01 1 25599029 25599029 C T RHD 5'UTR 0.19 TCGA-AA-A01P-01 1 25747287 25747287 G A RHCE 5'UTR 0.11 TCGA-AA-A01P-01 1 27097622 27097622 A - ARID1A Frame_Shift_Del p.K1072Nfs*21 0.20 TCGA-AA-A01P-01 1 27101417 27101417 C - ARID1A Frame_Shift_Del p.P1568Lfs*44 0.12 TCGA-AA-A01P-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.15 TCGA-AA-A01P-01 1 27175122 27175122 C T ZDHHC18 Missense_Mutation p.R174W 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01P-01 1 27630237 27630237 G A WDTC1 Missense_Mutation p.G531S 0.26 deleterious(0.01) probably_damaging(0.966) TCGA-AA-A01P-01 1 27690486 27690486 C T MAP3K6 Silent p.L262L 0.23 TCGA-AA-A01P-01 1 28282221 28282221 G C SMPDL3B Silent p.P239P 0.21 TCGA-AA-A01P-01 1 32829290 32829290 C T TSSK3 Silent p.A80A 0.23 TCGA-AA-A01P-01 1 33160609 33160609 T C SYNC Missense_Mutation p.T364A 0.22 tolerated(0.26) possibly_damaging(0.725) TCGA-AA-A01P-01 1 35223754 35223754 G - GJB5 3'UTR 0.16 TCGA-AA-A01P-01 1 36643174 36643174 A G MAP7D1 Intron 0.30 TCGA-AA-A01P-01 1 36643559 36643559 A G MAP7D1 Missense_Mutation p.T489A 0.27 benign(0.01) TCGA-AA-A01P-01 1 36931898 36931898 T G CSF3R 3'UTR 0.25 TCGA-AA-A01P-01 1 37270837 37270837 G A GRIK3 Silent p.G772G 0.27 TCGA-AA-A01P-01 1 37346470 37346470 G A GRIK3 Silent p.G105G 0.11 TCGA-AA-A01P-01 1 41250045 41250045 C - KCNQ4 Frame_Shift_Del p.R95Afs*44 0.19 TCGA-AA-A01P-01 1 43773477 43773477 T C TIE1 Silent p.P308P 0.14 TCGA-AA-A01P-01 1 45799268 45799268 T G MUTYH Splice_Site p.X53_splice 0.32 TCGA-AA-A01P-01 1 52811945 52811945 A G ZFYVE9 3'UTR 0.25 TCGA-AA-A01P-01 1 55166983 55166983 G A MROH7 Silent p.P1091P 0.23 TCGA-AA-A01P-01 1 6272077 6272077 C T RNF207 Silent p.F420F 0.19 TCGA-AA-A01P-01 1 6310657 6310657 G - GPR153 Frame_Shift_Del p.P336Rfs*20 0.19 TCGA-AA-A01P-01 1 65332611 65332611 C T JAK1 Missense_Mutation p.V310I 0.20 tolerated(0.47) benign(0) TCGA-AA-A01P-01 1 67185045 67185045 A G SGIP1 Missense_Mutation p.T567A 0.24 deleterious(0.01) benign(0.014) TCGA-AA-A01P-01 1 71513301 71513301 G A PTGER3 5'UTR 0.19 TCGA-AA-A01P-01 1 76877876 76877876 G A ST6GALNAC3 Missense_Mutation p.V133I 0.19 possibly_damaging(0.876) TCGA-AA-A01P-01 1 77510139 77510139 G - ST6GALNAC5 Frame_Shift_Del p.G172Afs*21 0.20 TCGA-AA-A01P-01 1 77752755 77752757 AAG - AK5 In_Frame_Del p.K65del 0.22 TCGA-AA-A01P-01 1 77883328 77883328 A G AK5 Silent p.S329S 0.17 TCGA-AA-A01P-01 1 78398877 78398877 A - NEXN Intron 0.39 TCGA-AA-A01P-01 1 78444659 78444659 G - FUBP1 Frame_Shift_Del p.S11Lfs*43 0.10 TCGA-AA-A01P-01 1 7869963 7869963 T C PER3 Missense_Mutation p.V417A 0.06 tolerated(0.95) benign(0.003) TCGA-AA-A01P-01 1 7995117 7995117 G A TNFRSF9 Missense_Mutation p.P167L 0.25 tolerated(0.28) benign(0.015) TCGA-AA-A01P-01 1 85630376 85630376 A G SYDE2 Missense_Mutation p.M973T 0.16 deleterious(0) possibly_damaging(0.9) TCGA-AA-A01P-01 1 86934566 86934566 T C CLCA1 5'UTR 0.17 TCGA-AA-A01P-01 1 89582875 89582875 C T GBP2 Missense_Mutation p.C223Y 0.06 deleterious(0.04) probably_damaging(0.961) TCGA-AA-A01P-01 1 907512 907512 C T PLEKHN1 Missense_Mutation p.R283C 0.18 deleterious(0.04) benign(0.028) TCGA-AA-A01P-01 1 91742573 91742573 A C HFM1 Silent p.L1146L 0.22 TCGA-AA-A01P-01 1 99150450 99150450 T A SNX7 Missense_Mutation p.L64M 0.21 deleterious_low_confidence(0.05) possibly_damaging(0.662) TCGA-AA-A01P-01 1 99772218 99772218 G A LPPR4 Silent p.K648K 0.29 TCGA-AA-A01P-01 20 17581651 17581651 C T DSTN Missense_Mutation p.T91I 0.19 deleterious(0.01) probably_damaging(0.956) TCGA-AA-A01P-01 20 17602122 17602122 C T RRBP1 Missense_Mutation p.R699H 0.34 deleterious(0) possibly_damaging(0.715) TCGA-AA-A01P-01 20 18794822 18794822 C T SCP2D1 Silent p.G121G 0.14 TCGA-AA-A01P-01 20 23028598 23028598 G A THBD Missense_Mutation p.S515L 0.19 deleterious(0.03) probably_damaging(0.982) TCGA-AA-A01P-01 20 23358123 23358123 C T NAPB Missense_Mutation p.V263M 0.25 deleterious(0) benign(0.066) TCGA-AA-A01P-01 20 24930205 24930206 - C CST7 Frame_Shift_Ins p.D24Rfs*8 0.14 TCGA-AA-A01P-01 20 25457616 25457616 G A NINL Missense_Mutation p.R771C 0.26 deleterious(0.01) benign(0.265) TCGA-AA-A01P-01 20 2818893 2818893 G A PCED1A Missense_Mutation p.R276C 0.31 deleterious(0) possibly_damaging(0.816) TCGA-AA-A01P-01 20 2845253 2845253 C G VPS16 Missense_Mutation p.Q627E 0.24 tolerated(0.29) benign(0.037) TCGA-AA-A01P-01 20 307695 307695 G T SOX12 3'UTR 0.17 TCGA-AA-A01P-01 20 31627157 31627157 C T BPIFB6 Missense_Mutation p.A302V 0.14 tolerated(0.3) benign(0.125) TCGA-AA-A01P-01 20 32664916 32664916 C T RALY Silent p.G247G 0.27 TCGA-AA-A01P-01 20 33509247 33509249 CTT - ACSS2 In_Frame_Del p.F478del 0.33 TCGA-AA-A01P-01 20 33587055 33587055 C T MYH7B Missense_Mutation p.R1505W 0.17 benign(0.001) TCGA-AA-A01P-01 20 35507489 35507489 C T TLDC2 Silent p.L79L 0.10 TCGA-AA-A01P-01 20 42340139 42340139 G A MYBL2 Silent p.P539P 0.23 TCGA-AA-A01P-01 20 42907701 42907701 T C GDAP1L1 Missense_Mutation p.Y289H 0.13 deleterious(0.04) possibly_damaging(0.857) TCGA-AA-A01P-01 20 43379181 43379181 T C KCNK15 Missense_Mutation p.L232P 0.11 deleterious(0) probably_damaging(0.988) TCGA-AA-A01P-01 20 45353880 45353880 A G SLC2A10 Missense_Mutation p.I69V 0.20 deleterious(0) benign(0.186) TCGA-AA-A01P-01 20 45865224 45865224 G A ZMYND8 Missense_Mutation p.T855M 0.19 deleterious(0) probably_damaging(0.992) TCGA-AA-A01P-01 20 48263537 48263537 G A B4GALT5 Missense_Mutation p.A110V 0.24 deleterious(0.04) benign(0.045) TCGA-AA-A01P-01 20 50273555 50273555 G A ATP9A Silent p.N476N 0.15 TCGA-AA-A01P-01 20 56093708 56093708 A - CTCFL Intron 0.26 TCGA-AA-A01P-01 20 56093760 56093760 T C CTCFL Intron 0.22 TCGA-AA-A01P-01 20 57599600 57599600 C T TUBB1 Missense_Mutation p.A373V 0.23 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AA-A01P-01 20 5930927 5930927 C T TRMT6 Missense_Mutation p.R42K 0.25 tolerated(1) benign(0.004) TCGA-AA-A01P-01 20 60498694 60498695 - C CDH4 Frame_Shift_Ins p.G523Rfs*13 0.14 TCGA-AA-A01P-01 20 60511828 60511828 C - CDH4 Frame_Shift_Del p.Y862Mfs*22 0.16 TCGA-AA-A01P-01 20 60888273 60888273 G A LAMA5 Silent p.D2942D 0.20 TCGA-AA-A01P-01 20 60895868 60895868 A G LAMA5 Missense_Mutation p.L2192P 0.18 probably_damaging(0.999) TCGA-AA-A01P-01 20 62421432 62421432 G A ZBTB46 Missense_Mutation p.R227C 0.25 tolerated(0.06) benign(0.006) TCGA-AA-A01P-01 21 15516777 15516777 A - LIPI Intron 0.14 TCGA-AA-A01P-01 21 28296725 28296725 T C ADAMTS5 Missense_Mutation p.R814G 0.24 tolerated(0.16) benign(0.338) TCGA-AA-A01P-01 21 31587610 31587610 C T CLDN8 Missense_Mutation p.G212R 0.23 tolerated(0.48) benign(0.034) TCGA-AA-A01P-01 21 32617909 32617909 G A TIAM1 Silent p.H493H 0.19 TCGA-AA-A01P-01 21 33975570 33975570 C T AP000275.65 Silent p.A189A 0.24 TCGA-AA-A01P-01 21 34109701 34109702 - G PAXBP1 Frame_Shift_Ins p.K834Qfs*32 0.11 TCGA-AA-A01P-01 21 35189647 35189647 G A ITSN1 Intron 0.18 TCGA-AA-A01P-01 21 37620846 37620846 G A DOPEY2 Missense_Mutation p.V1660I 0.21 tolerated(0.54) benign(0.055) TCGA-AA-A01P-01 21 38792604 38792604 T C DYRK1A 5'UTR 0.26 TCGA-AA-A01P-01 21 42540489 42540489 C - BACE2 Frame_Shift_Del p.P102Rfs*25 0.15 TCGA-AA-A01P-01 21 42748941 42748941 C T MX2 Silent p.F36F 0.24 TCGA-AA-A01P-01 21 43795822 43795822 C T TMPRSS3 Intron 0.19 TCGA-AA-A01P-01 21 45671548 45671548 C T DNMT3L Missense_Mutation p.G243S 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 21 45744488 45744488 G A PFKL Missense_Mutation p.A589T 0.35 deleterious(0.01) probably_damaging(0.964) TCGA-AA-A01P-01 21 48069573 48069573 C T PRMT2 Silent p.Y192Y 0.21 TCGA-AA-A01P-01 22 18368740 18368740 G A MICAL3 Silent p.A715A 0.20 TCGA-AA-A01P-01 22 20759822 20759822 G A ZNF74 Missense_Mutation p.A167T 0.27 tolerated(0.66) benign(0.002) TCGA-AA-A01P-01 22 21799865 21799865 G - HIC2 Frame_Shift_Del p.G229Afs*45 0.20 TCGA-AA-A01P-01 22 22697764 22697764 C A IGLV9-49 Missense_Mutation p.L18I 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-AA-A01P-01 22 24627387 24627387 C - GGT5 Frame_Shift_Del p.G289Vfs*11 0.12 TCGA-AA-A01P-01 22 25251358 25251358 C T SGSM1 Silent p.H210H 0.23 TCGA-AA-A01P-01 22 29533554 29533554 G A KREMEN1 Missense_Mutation p.G286R 0.31 deleterious(0) benign(0.171) TCGA-AA-A01P-01 22 30659991 30659991 C - OSM Frame_Shift_Del p.E214Rfs*15 0.20 TCGA-AA-A01P-01 22 30866052 30866052 C T SEC14L3 Missense_Mutation p.R63Q 0.31 deleterious(0.01) possibly_damaging(0.744) TCGA-AA-A01P-01 22 33255324 33255324 C - TIMP3 Frame_Shift_Del p.P201Rfs*26 0.18 TCGA-AA-A01P-01 22 37603838 37603838 T C SSTR3 Missense_Mutation p.D2G 0.13 deleterious_low_confidence(0.01) benign(0.006) TCGA-AA-A01P-01 22 38039751 38039751 A G SH3BP1 Missense_Mutation p.K192E 0.31 deleterious(0.01) possibly_damaging(0.685) TCGA-AA-A01P-01 22 38321873 38321873 G A MICALL1 Missense_Mutation p.E430K 0.28 deleterious(0.02) possibly_damaging(0.627) TCGA-AA-A01P-01 22 38528878 38528878 C T PLA2G6 Missense_Mutation p.R346H 0.23 tolerated(0.16) benign(0.013) TCGA-AA-A01P-01 22 40066205 40066205 C T CACNA1I Missense_Mutation p.R1453W 0.27 deleterious(0) possibly_damaging(0.689) TCGA-AA-A01P-01 22 42089772 42089772 T C C22orf46 Silent p.P174P 0.20 TCGA-AA-A01P-01 22 42896652 42896652 G A SERHL RNA 0.24 TCGA-AA-A01P-01 22 42952508 42952508 G A SERHL2 Intron 0.14 TCGA-AA-A01P-01 22 43280556 43280556 C G PACSIN2 Missense_Mutation p.K207N 0.26 deleterious(0) benign(0.441) TCGA-AA-A01P-01 22 45921473 45921473 C T FBLN1 Missense_Mutation p.A79V 0.19 tolerated(0.4) possibly_damaging(0.739) TCGA-AA-A01P-01 22 47507445 47507445 C T TBC1D22A Silent p.C457C 0.17 TCGA-AA-A01P-01 22 50321123 50321123 A G CRELD2 3'UTR 0.20 TCGA-AA-A01P-01 22 50986921 50986921 C T KLHDC7B Missense_Mutation p.A109V 0.38 tolerated_low_confidence(0.22) benign(0.001) TCGA-AA-A01P-01 22 50989007 50989007 C T KLHDC7B 3'UTR 0.16 TCGA-AA-A01P-01 22 51042091 51042091 C T MAPK8IP2 Missense_Mutation p.R162C 0.10 deleterious(0.01) benign(0.006) TCGA-AA-A01P-01 2 100021091 100021091 A G REV1 Missense_Mutation p.V954A 0.22 deleterious(0.04) benign(0.091) TCGA-AA-A01P-01 2 100171179 100171179 C T AFF3 Missense_Mutation p.A1126T 0.18 tolerated(0.12) benign(0.237) TCGA-AA-A01P-01 2 100722023 100722023 G A AFF3 5'UTR 0.20 TCGA-AA-A01P-01 2 101023061 101023061 G A CHST10 Missense_Mutation p.T26M 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-AA-A01P-01 2 101622869 101622869 T C RPL31 Intron 0.23 TCGA-AA-A01P-01 2 109124019 109124019 A G GCC2 Missense_Mutation p.E1663G 0.19 deleterious(0.01) probably_damaging(0.915) TCGA-AA-A01P-01 2 111413336 111413336 A G BUB1 Missense_Mutation p.V619A 0.17 tolerated(0.57) benign(0.003) TCGA-AA-A01P-01 2 121742146 121742146 G A GLI2 Missense_Mutation p.V595I 0.22 tolerated(0.2) probably_damaging(0.987) TCGA-AA-A01P-01 2 129026383 129026383 G A HS6ST1 Missense_Mutation p.H197Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-AA-A01P-01 2 130948157 130948157 G - MZT2B Frame_Shift_Del p.G147Afs*? 0.16 TCGA-AA-A01P-01 2 131520305 131520305 C T AMER3 Silent p.S220S 0.11 TCGA-AA-A01P-01 2 131797697 131797697 A G ARHGEF4 Missense_Mutation p.T286A 0.16 tolerated(0.56) benign(0.05) TCGA-AA-A01P-01 2 145274871 145274871 T C ZEB2 Missense_Mutation p.K16R 0.16 deleterious(0.01) benign(0.102) TCGA-AA-A01P-01 2 152320361 152320361 C T RIF1 Nonsense_Mutation p.R1443* 0.17 TCGA-AA-A01P-01 2 164466612 164466612 C T FIGN Missense_Mutation p.R577H 0.15 tolerated(0.11) probably_damaging(0.998) TCGA-AA-A01P-01 2 170115593 170115593 G A LRP2 Missense_Mutation p.R819C 0.22 probably_damaging(0.991) TCGA-AA-A01P-01 2 170606039 170606039 G T KLHL23 Missense_Mutation p.A492S 0.18 tolerated(0.77) benign(0.038) TCGA-AA-A01P-01 2 178936450 178936450 A G PDE11A Missense_Mutation p.S239P 0.14 deleterious(0) probably_damaging(0.976) TCGA-AA-A01P-01 2 179170844 179170847 TTTG - OSBPL6 5'UTR 0.16 TCGA-AA-A01P-01 2 179315041 179315042 CA - PRKRA Nonsense_Mutation p.C54* 0.12 TCGA-AA-A01P-01 2 179449370 179449370 T - TTN Intron 0.13 TCGA-AA-A01P-01 2 179464576 179464576 G A TTN Silent p.C18684C 0.16 TCGA-AA-A01P-01 2 179472028 179472029 TG - TTN Frame_Shift_Del p.P17767Rfs*3 0.20 TCGA-AA-A01P-01 2 179605507 179605507 C T TTN Silent p.Q4151Q 0.12 TCGA-AA-A01P-01 2 179714865 179714865 T A CCDC141 Missense_Mutation p.I1090F 0.19 deleterious(0.01) benign(0.242) TCGA-AA-A01P-01 2 183817892 183817892 T C NCKAP1 Missense_Mutation p.Q780R 0.24 deleterious(0.04) probably_damaging(0.982) TCGA-AA-A01P-01 2 191859910 191859910 C T STAT1 Missense_Mutation p.R274Q 0.05 deleterious(0.05) possibly_damaging(0.88) TCGA-AA-A01P-01 2 196791250 196791250 C T DNAH7 Missense_Mutation p.R1171Q 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 2 20234731 20234731 A - LAPTM4A Frame_Shift_Del p.F175Lfs*5 0.18 TCGA-AA-A01P-01 2 204304747 204304747 G A RAPH1 Missense_Mutation p.R1056C 0.14 unknown(0) TCGA-AA-A01P-01 2 206980996 206980996 T C AC007383.4 RNA 0.11 TCGA-AA-A01P-01 2 209169833 209169833 C T PIKFYVE Intron 0.13 TCGA-AA-A01P-01 2 209179085 209179085 T C PIKFYVE Silent p.H588H 0.21 TCGA-AA-A01P-01 2 210703977 210703977 C T UNC80 Missense_Mutation p.R1025W 0.16 probably_damaging(0.995) TCGA-AA-A01P-01 2 210889895 210889896 - T KANSL1L Frame_Shift_Ins p.Y833Ifs*2 0.14 TCGA-AA-A01P-01 2 210993799 210993799 T - KANSL1L Frame_Shift_Del p.I396Sfs*4 0.14 TCGA-AA-A01P-01 2 21235490 21235490 G A APOB Missense_Mutation p.T1417M 0.20 benign(0.092) TCGA-AA-A01P-01 2 216251680 216251680 A G FN1 Silent p.G1448G 0.19 TCGA-AA-A01P-01 2 220473318 220473318 C - STK11IP Frame_Shift_Del p.L552Cfs*50 0.17 TCGA-AA-A01P-01 2 224463791 224463791 A G SCG2 Silent p.H70H 0.20 TCGA-AA-A01P-01 2 234421103 234421103 A G USP40 Intron 0.16 TCGA-AA-A01P-01 2 234676937 234676937 G A UGT1A10 Missense_Mutation p.V383I 0.22 tolerated(0.1) benign(0.135) TCGA-AA-A01P-01 2 237103580 237103580 G - ASB18 Frame_Shift_Del p.L446Cfs*? 0.11 TCGA-AA-A01P-01 2 239139991 239139991 G A AC016757.3 5'UTR 0.17 TCGA-AA-A01P-01 2 240969626 240969626 A G OR6B2 Missense_Mutation p.V74A 0.10 deleterious(0) benign(0.103) TCGA-AA-A01P-01 2 241569627 241569627 G A GPR35 Silent p.T117T 0.19 TCGA-AA-A01P-01 2 242187504 242187504 G A HDLBP Nonsense_Mutation p.Q549* 0.14 TCGA-AA-A01P-01 2 242757733 242757734 - CTGCC NEU4 Frame_Shift_Ins p.W287Lfs*51 0.18 TCGA-AA-A01P-01 2 242814972 242814972 C T CXXC11 Missense_Mutation p.A422V 0.21 deleterious(0.03) possibly_damaging(0.855) TCGA-AA-A01P-01 2 26587778 26587778 G A EPT1 Missense_Mutation p.A69T 0.17 tolerated(0.12) benign(0.053) TCGA-AA-A01P-01 2 27302057 27302057 G - EMILIN1 Frame_Shift_Del p.Q45Rfs*20 0.12 TCGA-AA-A01P-01 2 27591320 27591320 C T EIF2B4 Missense_Mutation p.R190Q 0.06 tolerated(0.41) probably_damaging(0.998) TCGA-AA-A01P-01 2 29287719 29287719 C - C2orf71 3'UTR 0.18 TCGA-AA-A01P-01 2 29416517 29416517 G A ALK Missense_Mutation p.A1479V 0.07 tolerated(0.12) probably_damaging(0.997) TCGA-AA-A01P-01 2 32449529 32449529 G A NLRC4 3'UTR 0.24 TCGA-AA-A01P-01 2 37302698 37302698 C T HEATR5B Missense_Mutation p.R176H 0.16 deleterious(0) probably_damaging(0.988) TCGA-AA-A01P-01 2 37336400 37336400 G A EIF2AK2 Silent p.Y472Y 0.10 TCGA-AA-A01P-01 2 44079903 44079903 C T ABCG8 Missense_Mutation p.T287M 0.07 deleterious(0) possibly_damaging(0.88) TCGA-AA-A01P-01 2 47389784 47389784 A - CALM2 Frame_Shift_Del p.S18Hfs*11 0.18 TCGA-AA-A01P-01 2 48025815 48025815 A G MSH6 Silent p.V231V 0.19 TCGA-AA-A01P-01 2 54856336 54856336 G A SPTBN1 Missense_Mutation p.G689S 0.18 tolerated(0.16) probably_damaging(0.941) TCGA-AA-A01P-01 2 55194202 55194202 G A EML6 Missense_Mutation p.V1854M 0.20 tolerated(0.11) benign(0.004) TCGA-AA-A01P-01 2 55873424 55873424 T - PNPT1 Frame_Shift_Del p.I570Lfs*2 0.16 TCGA-AA-A01P-01 2 5841056 5841056 G - SOX11 3'UTR 0.13 TCGA-AA-A01P-01 2 65540821 65540821 G A SPRED2 Silent p.P357P 0.06 TCGA-AA-A01P-01 2 669817 669817 C A TMEM18 Missense_Mutation p.R89S 0.22 tolerated(0.07) benign(0.061) TCGA-AA-A01P-01 2 68544253 68544253 T C CNRIP1 Intron 0.17 TCGA-AA-A01P-01 2 68882132 68882132 C T PROKR1 Silent p.T202T 0.19 TCGA-AA-A01P-01 2 69207125 69207125 C T GKN1 Silent p.S146S 0.18 TCGA-AA-A01P-01 2 71206872 71206872 G A ANKRD53 Missense_Mutation p.V167M 0.20 deleterious(0) probably_damaging(0.998) TCGA-AA-A01P-01 2 71740928 71740928 G C DYSF Silent p.P212P 0.17 TCGA-AA-A01P-01 2 7179874 7179874 G A RNF144A Missense_Mutation p.D288N 0.19 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AA-A01P-01 2 73676421 73676421 C T ALMS1 Missense_Mutation p.P922S 0.05 benign(0.332) TCGA-AA-A01P-01 2 74783820 74783820 A G DOK1 Missense_Mutation p.E342G 0.08 tolerated(0.08) benign(0.002) TCGA-AA-A01P-01 2 84880871 84880871 T C DNAH6 Missense_Mutation p.I1836T 0.25 deleterious(0) benign(0.37) TCGA-AA-A01P-01 2 85571799 85571799 T C RETSAT Missense_Mutation p.I392V 0.18 tolerated(1) benign(0.004) TCGA-AA-A01P-01 2 88367492 88367492 C T SMYD1 Missense_Mutation p.R37W 0.26 deleterious(0.01) probably_damaging(0.963) TCGA-AA-A01P-01 2 96809747 96809747 G A DUSP2 Silent p.L254L 0.20 TCGA-AA-A01P-01 2 97357612 97357612 G A FER1L5 RNA 0.21 TCGA-AA-A01P-01 3 10491396 10491396 A G ATP2B2 5'UTR 0.33 TCGA-AA-A01P-01 3 108380750 108380750 C T DZIP3 Silent p.D742D 0.13 TCGA-AA-A01P-01 3 113321953 113321953 A G SIDT1 Missense_Mutation p.T407A 0.08 tolerated(0.12) benign(0.38) TCGA-AA-A01P-01 3 119198925 119198925 C T POGLUT1 Missense_Mutation p.P162S 0.07 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 3 122128665 122128665 C T FAM162A Missense_Mutation p.A151V 0.17 deleterious(0) probably_damaging(0.938) TCGA-AA-A01P-01 3 122631118 122631118 G A SEMA5B Missense_Mutation p.R987C 0.22 deleterious(0) probably_damaging(0.969) TCGA-AA-A01P-01 3 126707791 126707791 C A PLXNA1 Missense_Mutation p.L119M 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 3 12977246 12977246 G A IQSEC1 Missense_Mutation p.R438W 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.776) TCGA-AA-A01P-01 3 132337446 132337447 - A ACAD11 Intron 0.18 TCGA-AA-A01P-01 3 134851793 134851793 C T EPHB1 Missense_Mutation p.T400I 0.18 deleterious(0.02) possibly_damaging(0.789) TCGA-AA-A01P-01 3 137964044 137964044 C T ARMC8 Intron 0.07 TCGA-AA-A01P-01 3 138375049 138375050 AG - PIK3CB Frame_Shift_Del p.F1004Cfs*10 0.19 TCGA-AA-A01P-01 3 138724853 138724853 C T PRR23A Silent p.S86S 0.21 TCGA-AA-A01P-01 3 142030643 142030643 T - XRN1 Frame_Shift_Del p.R1611Gfs*34 0.18 TCGA-AA-A01P-01 3 145789117 145789117 G A PLOD2 Missense_Mutation p.R648W 0.21 deleterious(0) probably_damaging(0.99) TCGA-AA-A01P-01 3 150344914 150344914 G A SELT Missense_Mutation p.R194Q 0.18 tolerated_low_confidence(0.33) benign(0) TCGA-AA-A01P-01 3 151164621 151164621 T - IGSF10 Frame_Shift_Del p.S1050Afs*12 0.23 TCGA-AA-A01P-01 3 156139403 156139403 A G KCNAB1 Splice_Site p.X92_splice 0.20 TCGA-AA-A01P-01 3 158409373 158409373 G A GFM1 3'UTR 0.22 TCGA-AA-A01P-01 3 159998492 159998492 C T IFT80 Missense_Mutation p.D543N 0.17 deleterious(0.02) benign(0.193) TCGA-AA-A01P-01 3 160786805 160786805 C T PPM1L Nonsense_Mutation p.R315* 0.08 TCGA-AA-A01P-01 3 16268973 16268973 G A GALNT15 Missense_Mutation p.R629H 0.23 tolerated(0.3) benign(0.004) TCGA-AA-A01P-01 3 16336406 16336406 T C OXNAD1 Missense_Mutation p.S112P 0.18 deleterious(0) probably_damaging(0.986) TCGA-AA-A01P-01 3 167051615 167051615 C A ZBBX Missense_Mutation p.E229D 0.15 deleterious(0.05) benign(0.067) TCGA-AA-A01P-01 3 167277927 167277927 G A WDR49 Silent p.N192N 0.24 TCGA-AA-A01P-01 3 169953102 169953102 C T PRKCI Silent p.N62N 0.08 TCGA-AA-A01P-01 3 170727822 170727822 A C SLC2A2 Missense_Mutation p.L141V 0.30 deleterious(0) probably_damaging(0.926) TCGA-AA-A01P-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.24 TCGA-AA-A01P-01 3 186256620 186256620 C A CRYGS Missense_Mutation p.E134D 0.21 tolerated(0.68) benign(0.011) TCGA-AA-A01P-01 3 186338737 186338737 T C AHSG 3'UTR 0.09 TCGA-AA-A01P-01 3 186980338 186980338 C T MASP1 Missense_Mutation p.M136I 0.22 deleterious(0.04) benign(0.009) TCGA-AA-A01P-01 3 195510989 195510989 A T MUC4 Missense_Mutation p.S2488T 0.10 unknown(0) TCGA-AA-A01P-01 3 195925263 195925263 G A ZDHHC19 Missense_Mutation p.P278L 0.23 tolerated(0.2) benign(0.001) TCGA-AA-A01P-01 3 196743116 196743116 G A MFI2 Missense_Mutation p.A342V 0.08 tolerated(0.13) benign(0.23) TCGA-AA-A01P-01 3 25805747 25805748 - T NGLY1 Frame_Shift_Ins p.I101Nfs*3 0.17 TCGA-AA-A01P-01 3 31789546 31789546 C T OSBPL10 Missense_Mutation p.G266S 0.19 tolerated(0.13) probably_damaging(1) TCGA-AA-A01P-01 3 37038114 37038114 G T MLH1 Missense_Mutation p.D41Y 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 3 38127850 38127850 G A DLEC1 Nonsense_Mutation p.W518* 0.24 TCGA-AA-A01P-01 3 38163910 38163910 G A DLEC1 3'UTR 0.20 TCGA-AA-A01P-01 3 38616934 38616934 G A SCN5A Missense_Mutation p.R1174W 0.28 deleterious(0) possibly_damaging(0.814) TCGA-AA-A01P-01 3 41504649 41504649 G A ULK4 Missense_Mutation p.L1108F 0.06 deleterious(0) probably_damaging(0.994) TCGA-AA-A01P-01 3 42703053 42703055 AGA - ZBTB47 In_Frame_Del p.K519del 0.21 TCGA-AA-A01P-01 3 44975466 44975466 G A ZDHHC3 Missense_Mutation p.R148W 0.22 deleterious(0) probably_damaging(0.967) TCGA-AA-A01P-01 3 46416458 46416458 G T CCR5 3'UTR 0.05 TCGA-AA-A01P-01 3 46501147 46501147 G A LTF Missense_Mutation p.A69V 0.23 tolerated(0.24) benign(0.029) TCGA-AA-A01P-01 3 46751364 46751364 C - TMIE 3'UTR 0.11 TCGA-AA-A01P-01 3 47282419 47282419 T A KIF9 Missense_Mutation p.N599I 0.08 deleterious(0) probably_damaging(0.98) TCGA-AA-A01P-01 3 48683179 48683180 - G CELSR3 Frame_Shift_Ins p.R2529Pfs*2 0.18 TCGA-AA-A01P-01 3 48720403 48720403 C T NCKIPSD Missense_Mutation p.E72K 0.29 deleterious(0.02) probably_damaging(0.986) TCGA-AA-A01P-01 3 48730458 48730458 A G IP6K2 Silent p.H119H 0.25 TCGA-AA-A01P-01 3 49136103 49136103 C T QARS Missense_Mutation p.R629H 0.15 deleterious(0.01) probably_damaging(1) TCGA-AA-A01P-01 3 49148555 49148555 C T USP19 Missense_Mutation p.V1123I 0.11 tolerated(0.53) benign(0.274) TCGA-AA-A01P-01 3 49405932 49405932 A G RHOA Missense_Mutation p.L69P 0.21 deleterious(0) probably_damaging(0.993) TCGA-AA-A01P-01 3 49569197 49569197 C - DAG1 Frame_Shift_Del p.P419Lfs*88 0.19 TCGA-AA-A01P-01 3 50257403 50257403 C - SLC38A3 RNA 0.20 TCGA-AA-A01P-01 3 5214397 5214397 T C ARL8B Missense_Mutation p.L115P 0.21 deleterious(0) probably_damaging(0.997) TCGA-AA-A01P-01 3 52256056 52256056 G A TLR9 Missense_Mutation p.A913V 0.16 deleterious(0.03) benign(0.236) TCGA-AA-A01P-01 3 52256660 52256660 G A TLR9 Missense_Mutation p.P712S 0.13 tolerated(0.95) possibly_damaging(0.782) TCGA-AA-A01P-01 3 52521275 52521275 C A NISCH Silent p.P589P 0.23 TCGA-AA-A01P-01 3 52556822 52556822 T C STAB1 Missense_Mutation p.L2259P 0.21 deleterious(0) probably_damaging(0.988) TCGA-AA-A01P-01 3 52818447 52818447 G A ITIH1 Missense_Mutation p.R454Q 0.20 deleterious(0.04) benign(0.026) TCGA-AA-A01P-01 3 52837988 52837988 C T ITIH3 Silent p.N609N 0.27 TCGA-AA-A01P-01 3 52966194 52966194 C T SFMBT1 Missense_Mutation p.R195H 0.23 deleterious(0.02) benign(0.004) TCGA-AA-A01P-01 3 53269131 53269131 G A TKT Missense_Mutation p.A174V 0.22 deleterious(0) probably_damaging(0.973) TCGA-AA-A01P-01 3 53781420 53781420 G A CACNA1D Missense_Mutation p.V1107I 0.05 deleterious(0.03) probably_damaging(0.994) TCGA-AA-A01P-01 3 55733483 55733483 G A ERC2 Missense_Mutation p.H924Y 0.25 tolerated(0.16) benign(0.296) TCGA-AA-A01P-01 3 62355885 62355885 G A FEZF2 Missense_Mutation p.T418M 0.22 deleterious(0) probably_damaging(0.981) TCGA-AA-A01P-01 3 72861878 72861878 C T SHQ1 Missense_Mutation p.R335H 0.16 deleterious(0) probably_damaging(0.993) TCGA-AA-A01P-01 3 74548922 74548922 G A CNTN3 Nonsense_Mutation p.Q24* 0.19 TCGA-AA-A01P-01 3 75679951 75679951 G T MIR1324 RNA 0.05 TCGA-AA-A01P-01 3 88041324 88041324 A G HTR1F 3'UTR 0.18 TCGA-AA-A01P-01 3 93592935 93592935 T - PROS1 3'UTR 0.22 TCGA-AA-A01P-01 3 99567751 99567751 G A FILIP1L Silent p.T923T 0.20 TCGA-AA-A01P-01 4 10080591 10080591 C T WDR1 Missense_Mutation p.S440N 0.23 tolerated(0.11) benign(0.001) TCGA-AA-A01P-01 4 106161908 106161908 C T TET2 Intron 0.17 TCGA-AA-A01P-01 4 114275049 114275049 G A ANK2 Missense_Mutation p.E1759K 0.25 probably_damaging(0.916) TCGA-AA-A01P-01 4 120169912 120169912 G A USP53 Missense_Mutation p.A83T 0.15 tolerated(0.18) benign(0.431) TCGA-AA-A01P-01 4 123747942 123747942 G - FGF2 Frame_Shift_Del p.G6Vfs*4 0.14 TCGA-AA-A01P-01 4 125593090 125593090 T C ANKRD50 Missense_Mutation p.T448A 0.15 tolerated(0.65) benign(0.012) TCGA-AA-A01P-01 4 126412800 126412800 C T FAT4 Silent p.G4941G 0.14 TCGA-AA-A01P-01 4 129782983 129782983 G A JADE1 Missense_Mutation p.S369N 0.16 deleterious(0) probably_damaging(0.924) TCGA-AA-A01P-01 4 135121385 135121385 G A PABPC4L Missense_Mutation p.R322W 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 4 13601771 13601771 G A BOD1L1 Silent p.D2251D 0.15 TCGA-AA-A01P-01 4 146058958 146058958 T C OTUD4 Missense_Mutation p.E925G 0.05 tolerated(0.09) benign(0.084) TCGA-AA-A01P-01 4 146073755 146073755 A G OTUD4 Silent p.N237N 0.26 TCGA-AA-A01P-01 4 151177332 151177332 C - DCLK2 Frame_Shift_Del p.H764Tfs*153 0.26 TCGA-AA-A01P-01 4 153750858 153750858 C T ARFIP1 Missense_Mutation p.R25C 0.27 tolerated_low_confidence(0.1) benign(0.001) TCGA-AA-A01P-01 4 153893619 153893619 A - FHDC1 Frame_Shift_Del p.T439Pfs*2 0.21 TCGA-AA-A01P-01 4 155242025 155242025 G T DCHS2 Missense_Mutation p.S1054Y 0.22 tolerated(1) benign(0.017) TCGA-AA-A01P-01 4 156137252 156137252 C T NPY2R 3'UTR 0.16 TCGA-AA-A01P-01 4 15780190 15780190 C T CD38 Silent p.S51S 0.15 TCGA-AA-A01P-01 4 160235806 160235806 G A RAPGEF2 Missense_Mutation p.E86K 0.16 deleterious(0) probably_damaging(0.973) TCGA-AA-A01P-01 4 169393052 169393052 T C DDX60L Missense_Mutation p.N37S 0.20 deleterious(0) benign(0.138) TCGA-AA-A01P-01 4 173734773 173734773 A C GALNTL6 Missense_Mutation p.Q274H 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 4 175897391 175897392 - T ADAM29 Frame_Shift_Ins p.G240Wfs*3 0.20 TCGA-AA-A01P-01 4 183721173 183721173 C T TENM3 Missense_Mutation p.T2590M 0.23 deleterious(0.01) probably_damaging(0.93) TCGA-AA-A01P-01 4 185941614 185941614 G A HELT Silent p.S224S 0.20 TCGA-AA-A01P-01 4 186263256 186263256 C T SNX25 Missense_Mutation p.R561W 0.27 deleterious(0) probably_damaging(0.99) TCGA-AA-A01P-01 4 20529990 20529990 G A SLIT2 Intron 0.18 TCGA-AA-A01P-01 4 20598058 20598058 C A SLIT2 Missense_Mutation p.S1114Y 0.30 deleterious(0) possibly_damaging(0.701) TCGA-AA-A01P-01 4 2065765 2065765 G A NAT8L Missense_Mutation p.V274M 0.26 tolerated(0.06) possibly_damaging(0.661) TCGA-AA-A01P-01 4 2194939 2194939 C T POLN Nonsense_Mutation p.W338* 0.20 TCGA-AA-A01P-01 4 2943186 2943187 - T NOP14 Intron 0.10 TCGA-AA-A01P-01 4 37447352 37447352 G A KIAA1239 Missense_Mutation p.A1248T 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 4 40818246 40818246 G A APBB2 Missense_Mutation p.P715S 0.18 tolerated(0.12) probably_damaging(0.999) TCGA-AA-A01P-01 4 42025372 42025372 G A SLC30A9 Missense_Mutation p.R194H 0.19 deleterious(0.01) benign(0.144) TCGA-AA-A01P-01 4 44449637 44449637 C T KCTD8 Missense_Mutation p.V302I 0.15 tolerated(0.33) benign(0.001) TCGA-AA-A01P-01 4 501346 501346 C T PIGG Silent p.S241S 0.12 TCGA-AA-A01P-01 4 52862092 52862092 C A LRRC66 Missense_Mutation p.G366C 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-AA-A01P-01 4 54374387 54374387 C T LNX1 Missense_Mutation p.G130S 0.17 deleterious(0.01) possibly_damaging(0.78) TCGA-AA-A01P-01 4 5570198 5570198 G A EVC2 Missense_Mutation p.A1177V 0.13 tolerated(0.14) benign(0.167) TCGA-AA-A01P-01 4 5843119 5843119 C T CRMP1 Missense_Mutation p.A357T 0.05 deleterious(0.02) benign(0.084) TCGA-AA-A01P-01 4 68543398 68543398 G C UBA6 Nonsense_Mutation p.Y132* 0.16 TCGA-AA-A01P-01 4 69195927 69195927 T A YTHDC1 Missense_Mutation p.K408N 0.16 deleterious(0.02) probably_damaging(0.981) TCGA-AA-A01P-01 4 72319251 72319251 G A SLC4A4 Silent p.A454A 0.05 TCGA-AA-A01P-01 4 74364946 74364946 G A AFM Missense_Mutation p.A469T 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-AA-A01P-01 4 79284771 79284771 G A FRAS1 Missense_Mutation p.V843I 0.23 benign(0.028) TCGA-AA-A01P-01 4 80898696 80898696 T - ANTXR2 3'Flank 0.20 TCGA-AA-A01P-01 4 80905088 80905088 T G ANTXR2 Missense_Mutation p.T375P 0.20 deleterious(0) probably_damaging(0.99) TCGA-AA-A01P-01 4 81504249 81504249 C T C4orf22 Missense_Mutation p.T82M 0.20 deleterious(0.05) benign(0.157) TCGA-AA-A01P-01 4 81884735 81884735 T - C4orf22 Frame_Shift_Del p.F242Lfs*? 0.14 TCGA-AA-A01P-01 4 8588870 8588870 C T GPR78 Missense_Mutation p.P291L 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 4 860814 860814 C T GAK Silent p.P934P 0.14 TCGA-AA-A01P-01 4 87672194 87672194 C T PTPN13 Missense_Mutation p.A1028V 0.14 deleterious(0.03) probably_damaging(0.916) TCGA-AA-A01P-01 4 88099711 88099711 G T KLHL8 Nonsense_Mutation p.C338* 0.11 TCGA-AA-A01P-01 4 88766851 88766851 A C MEPE Missense_Mutation p.E277D 0.19 tolerated(0.11) benign(0.022) TCGA-AA-A01P-01 4 89591056 89591056 T C HERC3 Missense_Mutation p.V560A 0.17 deleterious(0.03) benign(0.003) TCGA-AA-A01P-01 4 95199873 95199873 T A SMARCAD1 Missense_Mutation p.I762N 0.16 deleterious(0.04) possibly_damaging(0.521) TCGA-AA-A01P-01 4 96166235 96166235 C T UNC5C Missense_Mutation p.G279E 0.06 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 4 9785349 9785349 G C DRD5 3'UTR 0.07 TCGA-AA-A01P-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.24 TCGA-AA-A01P-01 5 108290522 108290522 A - FER Frame_Shift_Del p.K476Nfs*53 0.18 TCGA-AA-A01P-01 5 1088464 1088464 G A SLC12A7 Silent p.T167T 0.16 TCGA-AA-A01P-01 5 110448831 110448831 C A WDR36 Missense_Mutation p.T648N 0.23 deleterious(0) probably_damaging(0.958) TCGA-AA-A01P-01 5 112349152 112349152 A G DCP2 Missense_Mutation p.N412D 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-AA-A01P-01 5 114515765 114515765 C T TRIM36 5'UTR 0.20 TCGA-AA-A01P-01 5 114632271 114632271 G A CCDC112 5'UTR 0.45 TCGA-AA-A01P-01 5 118513925 118513925 C T DMXL1 Missense_Mutation p.S2374L 0.22 tolerated(0.15) benign(0.005) TCGA-AA-A01P-01 5 128862019 128862019 G T ADAMTS19 Missense_Mutation p.R313I 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A01P-01 5 133481442 133481442 G A TCF7 Intron 0.08 TCGA-AA-A01P-01 5 134296467 134296467 T - PCBD2 Intron 0.21 TCGA-AA-A01P-01 5 134871050 134871050 C T NEUROG1 Missense_Mutation p.A111T 0.22 deleterious(0) probably_damaging(0.98) TCGA-AA-A01P-01 5 137500012 137500012 A G BRD8 Missense_Mutation p.S608P 0.06 tolerated(0.09) possibly_damaging(0.885) TCGA-AA-A01P-01 5 139751200 139751200 C - SLC4A9 Frame_Shift_Del p.L913Sfs*28 0.20 TCGA-AA-A01P-01 5 140057562 140057562 A G HARS Silent p.P187P 0.21 TCGA-AA-A01P-01 5 140188624 140188624 G A PCDHA4 Missense_Mutation p.A618T 0.24 tolerated_low_confidence(0.16) benign(0.009) TCGA-AA-A01P-01 5 140227969 140227969 T C PCDHA9 5'UTR 0.13 TCGA-AA-A01P-01 5 140229580 140229580 C T PCDHA9 Silent p.G500G 0.22 TCGA-AA-A01P-01 5 140256910 140256910 C T PCDHA12 Missense_Mutation p.A618V 0.25 tolerated_low_confidence(0.14) benign(0.071) TCGA-AA-A01P-01 5 140263878 140263878 G A PCDHA13 Silent p.A675A 0.24 TCGA-AA-A01P-01 5 140480897 140480897 C T PCDHB3 Missense_Mutation p.R222W 0.27 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AA-A01P-01 5 140553840 140553840 C A PCDHB7 Missense_Mutation p.A475D 0.24 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-AA-A01P-01 5 140554567 140554567 G T PCDHB7 Silent p.A717A 0.09 TCGA-AA-A01P-01 5 140558615 140558615 G A PCDHB8 Missense_Mutation p.V334I 0.12 tolerated_low_confidence(0.11) benign(0.037) TCGA-AA-A01P-01 5 140710513 140710513 C T PCDHGA1 Missense_Mutation p.R88C 0.24 deleterious_low_confidence(0) benign(0.113) TCGA-AA-A01P-01 5 140719021 140719021 C T PCDHGA2 Silent p.D161D 0.16 TCGA-AA-A01P-01 5 140754997 140754997 G A PCDHGA6 Silent p.P449P 0.21 TCGA-AA-A01P-01 5 140769076 140769076 C T PCDHGB4 Missense_Mutation p.A542V 0.17 deleterious(0.02) possibly_damaging(0.634) TCGA-AA-A01P-01 5 140774511 140774512 - T PCDHGA8 Frame_Shift_Ins p.L712Sfs*33 0.13 TCGA-AA-A01P-01 5 140798162 140798162 G A PCDHGB7 Missense_Mutation p.V246M 0.30 tolerated(0.12) benign(0.068) TCGA-AA-A01P-01 5 141019326 141019326 C T FCHSD1 3'UTR 0.25 TCGA-AA-A01P-01 5 141023816 141023816 G - FCHSD1 Frame_Shift_Del p.P611Qfs*52 0.18 TCGA-AA-A01P-01 5 145838849 145838849 T C TCERG1 Missense_Mutation p.S281P 0.17 tolerated_low_confidence(0.11) unknown(0) TCGA-AA-A01P-01 5 149772326 149772326 C T TCOF1 Silent p.S1191S 0.19 TCGA-AA-A01P-01 5 150028275 150028275 G A SYNPO Silent p.P390P 0.25 TCGA-AA-A01P-01 5 154396894 154396894 C T KIF4B Missense_Mutation p.P1159S 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-AA-A01P-01 5 156608025 156608025 A G ITK Missense_Mutation p.K13E 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 5 156899705 156899705 T C NIPAL4 Missense_Mutation p.Y380H 0.20 tolerated(0.31) benign(0.002) TCGA-AA-A01P-01 5 160763657 160763657 T G GABRB2 Missense_Mutation p.K221Q 0.31 tolerated(0.39) benign(0.08) TCGA-AA-A01P-01 5 167553787 167553787 C T TENM2 Silent p.H746H 0.24 TCGA-AA-A01P-01 5 169026014 169026014 A G SPDL1 Missense_Mutation p.Q392R 0.19 deleterious(0) probably_damaging(0.947) TCGA-AA-A01P-01 5 169533268 169533268 G - FOXI1 Frame_Shift_Del p.S105Afs*14 0.11 TCGA-AA-A01P-01 5 172750262 172750262 T A STC2 Missense_Mutation p.I156L 0.13 tolerated(0.1) benign(0.007) TCGA-AA-A01P-01 5 173380277 173380277 T C CPEB4 Splice_Site p.X654_splice 0.23 TCGA-AA-A01P-01 5 173416304 173416304 C T C5orf47 Missense_Mutation p.A13V 0.28 tolerated(0.06) possibly_damaging(0.873) TCGA-AA-A01P-01 5 175387087 175387087 G A THOC3 Missense_Mutation p.A314V 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A01P-01 5 176011640 176011640 G - CDHR2 Frame_Shift_Del p.G788Vfs*4 0.24 TCGA-AA-A01P-01 5 176397750 176397750 C A UIMC1 Missense_Mutation p.S117I 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 5 176884454 176884456 CCT - DBN1 In_Frame_Del p.E645del 0.20 TCGA-AA-A01P-01 5 180651682 180651682 C A TRIM41 Missense_Mutation p.P228H 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-AA-A01P-01 5 24487659 24487659 A - CDH10 3'UTR 0.33 TCGA-AA-A01P-01 5 37196023 37196023 C T C5orf42 Missense_Mutation p.A1250T 0.14 tolerated(0.05) benign(0.014) TCGA-AA-A01P-01 5 39383080 39383080 C T DAB2 Silent p.S327S 0.23 TCGA-AA-A01P-01 5 40852608 40852608 C T CARD6 Missense_Mutation p.R392C 0.25 tolerated(0.22) benign(0.032) TCGA-AA-A01P-01 5 41731726 41731726 A - OXCT1 3'UTR 0.09 TCGA-AA-A01P-01 5 6449202 6449202 C T UBE2QL1 Missense_Mutation p.P66S 0.06 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 5 66427757 66427757 C T MAST4 Missense_Mutation p.H691Y 0.30 probably_damaging(0.997) TCGA-AA-A01P-01 5 6755007 6755008 - A PAPD7 Frame_Shift_Ins p.H529Tfs*80 0.16 TCGA-AA-A01P-01 5 72370576 72370576 A G FCHO2 Silent p.S529S 0.15 TCGA-AA-A01P-01 5 79025547 79025547 A G CMYA5 Missense_Mutation p.H320R 0.16 benign(0) TCGA-AA-A01P-01 5 96122183 96122183 T - ERAP1 Frame_Shift_Del p.T584Qfs*21 0.16 TCGA-AA-A01P-01 5 96315041 96315041 A G LNPEP Silent p.S73S 0.21 TCGA-AA-A01P-01 6 100062573 100062573 G A PRDM13 Missense_Mutation p.V688I 0.26 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-AA-A01P-01 6 107390843 107390843 C T BEND3 Missense_Mutation p.E518K 0.24 tolerated(0.05) benign(0.169) TCGA-AA-A01P-01 6 110301008 110301008 C T GPR6 Silent p.S231S 0.19 TCGA-AA-A01P-01 6 110539001 110539001 A C CDC40 Missense_Mutation p.E362A 0.21 deleterious(0) probably_damaging(0.993) TCGA-AA-A01P-01 6 110714137 110714138 CT - DDO Frame_Shift_Del p.E317Afs*58 0.21 TCGA-AA-A01P-01 6 111995735 111995735 C T FYN Missense_Mutation p.E458K 0.19 deleterious(0) probably_damaging(0.984) TCGA-AA-A01P-01 6 116914281 116914281 G A RWDD1 3'UTR 0.34 TCGA-AA-A01P-01 6 119149102 119149102 G A MCM9 Nonsense_Mutation p.R574* 0.19 TCGA-AA-A01P-01 6 123318465 123318465 G A CLVS2 5'UTR 0.18 TCGA-AA-A01P-01 6 126249786 126249786 C T NCOA7 Nonsense_Mutation p.R900* 0.18 TCGA-AA-A01P-01 6 131220647 131220647 T C EPB41L2 Missense_Mutation p.D407G 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-A01P-01 6 139237066 139237066 G - REPS1 Frame_Shift_Del p.P549Lfs*14 0.19 TCGA-AA-A01P-01 6 143999165 143999167 AGA - PHACTR2 5'UTR 0.13 TCGA-AA-A01P-01 6 146351085 146351085 C T GRM1 Silent p.G144G 0.13 TCGA-AA-A01P-01 6 149983141 149983141 A - LATS1 Frame_Shift_Del p.F1039Lfs*19 0.15 TCGA-AA-A01P-01 6 151270242 151270242 G A MTHFD1L Missense_Mutation p.D567N 0.23 deleterious(0.04) possibly_damaging(0.811) TCGA-AA-A01P-01 6 151670581 151670581 C T AKAP12 Missense_Mutation p.A352V 0.12 tolerated(0.27) benign(0.005) TCGA-AA-A01P-01 6 151738447 151738447 C T RMND1 Silent p.T389T 0.16 TCGA-AA-A01P-01 6 15513220 15513220 A - JARID2 Frame_Shift_Del p.E1073Kfs*106 0.13 TCGA-AA-A01P-01 6 157528909 157528909 C T ARID1B Missense_Mutation p.R2212C 0.21 probably_damaging(0.959) TCGA-AA-A01P-01 6 158923159 158923160 - C TULP4 Frame_Shift_Ins p.Q824Pfs*63 0.14 TCGA-AA-A01P-01 6 158994509 158994509 C T TMEM181 Silent p.V159V 0.17 TCGA-AA-A01P-01 6 159653361 159653361 C T FNDC1 Missense_Mutation p.T606M 0.24 deleterious_low_confidence(0) unknown(0) TCGA-AA-A01P-01 6 160106000 160106000 C T SOD2 Missense_Mutation p.A137T 0.18 tolerated(0.28) benign(0.003) TCGA-AA-A01P-01 6 161532985 161532985 C T MAP3K4 Missense_Mutation p.T1505I 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 6 16327431 16327431 T C ATXN1 Missense_Mutation p.S371G 0.22 tolerated(0.59) benign(0) TCGA-AA-A01P-01 6 168377044 168377044 C T RP3-470B24.5 RNA 0.08 TCGA-AA-A01P-01 6 168464428 168464428 G A FRMD1 Silent p.T219T 0.15 TCGA-AA-A01P-01 6 168710929 168710929 C T DACT2 Missense_Mutation p.E193K 0.19 tolerated(0.42) benign(0.099) TCGA-AA-A01P-01 6 169632891 169632891 G A THBS2 Silent p.I600I 0.20 TCGA-AA-A01P-01 6 18222307 18222307 A - KDM1B 3'UTR 0.15 TCGA-AA-A01P-01 6 26184045 26184045 G A HIST1H2BE Missense_Mutation p.A8T 0.22 tolerated_low_confidence(0.13) unknown(0) TCGA-AA-A01P-01 6 26199226 26199226 T G HIST1H2AD Silent p.R82R 0.13 TCGA-AA-A01P-01 6 26199229 26199229 G C HIST1H2AD Silent p.P81P 0.13 TCGA-AA-A01P-01 6 26225715 26225715 C T HIST1H3E Silent p.C111C 0.20 TCGA-AA-A01P-01 6 26225743 26225743 A G HIST1H3E Missense_Mutation p.M121V 0.14 deleterious_low_confidence(0.03) benign(0.009) TCGA-AA-A01P-01 6 27100534 27100534 C T HIST1H2BJ 5'Flank 0.09 TCGA-AA-A01P-01 6 30557493 30557493 G A ABCF1 Missense_Mutation p.R687Q 0.18 tolerated(0.06) possibly_damaging(0.49) TCGA-AA-A01P-01 6 30954670 30954670 G A MUC21 Missense_Mutation p.A240T 0.20 tolerated(0.17) unknown(0) TCGA-AA-A01P-01 6 3111145 3111145 C T RIPK1 Missense_Mutation p.T562M 0.17 tolerated(0.31) benign(0.001) TCGA-AA-A01P-01 6 3127600 3127601 - T BPHL Frame_Shift_Ins p.E115* 0.15 TCGA-AA-A01P-01 6 31323363 31323363 G - HLA-B Frame_Shift_Del p.P209Qfs*5 0.24 TCGA-AA-A01P-01 6 31324558 31324558 A G HLA-B Missense_Mutation p.W84R 0.06 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-AA-A01P-01 6 31744482 31744482 G - VWA7 Frame_Shift_Del p.T26Hfs*23 0.08 TCGA-AA-A01P-01 6 31783747 31783747 C T HSPA1A Missense_Mutation p.R72W 0.38 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AA-A01P-01 6 31864131 31864131 C A EHMT2 Missense_Mutation p.G164V 0.16 tolerated_low_confidence(0.13) possibly_damaging(0.476) TCGA-AA-A01P-01 6 32064925 32064925 G A TNXB Silent p.C235C 0.27 TCGA-AA-A01P-01 6 32118178 32118178 G A PRRT1 Silent p.C175C 0.26 TCGA-AA-A01P-01 6 32782938 32782938 G A HLA-DOB Missense_Mutation p.P82S 0.20 tolerated(0.07) benign(0.172) TCGA-AA-A01P-01 6 32942322 32942325 TCTT - BRD2 Frame_Shift_Del p.L38Rfs*47 0.27 TCGA-AA-A01P-01 6 33273073 33273073 G - TAPBP Frame_Shift_Del p.T188Pfs*17 0.15 TCGA-AA-A01P-01 6 33636850 33636850 G A ITPR3 Silent p.E702E 0.21 TCGA-AA-A01P-01 6 36981534 36981534 G A FGD2 Missense_Mutation p.R226H 0.12 tolerated(0.06) probably_damaging(0.963) TCGA-AA-A01P-01 6 37631751 37631751 G T MDGA1 Silent p.R67R 0.31 TCGA-AA-A01P-01 6 42906613 42906613 C T CNPY3 3'UTR 0.25 TCGA-AA-A01P-01 6 42980325 42980325 T C MEA1 Silent p.G147G 0.12 TCGA-AA-A01P-01 6 43481339 43481339 A T YIPF3 Missense_Mutation p.V143D 0.19 deleterious(0.01) benign(0.18) TCGA-AA-A01P-01 6 51929757 51929757 C T PKHD1 Silent p.Q324Q 0.16 TCGA-AA-A01P-01 6 52344014 52344014 C - EFHC1 Frame_Shift_Del p.S488Vfs*8 0.09 TCGA-AA-A01P-01 6 54735369 54735369 C T FAM83B Missense_Mutation p.P109S 0.10 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 6 56564456 56564456 A C DST Missense_Mutation p.F137V 0.26 benign(0.023) TCGA-AA-A01P-01 6 57512629 57512629 C T PRIM2 3'UTR 0.07 TCGA-AA-A01P-01 6 70071069 70071069 A C BAI3 Silent p.R1302R 0.17 TCGA-AA-A01P-01 6 72011539 72011539 C T OGFRL1 Silent p.S381S 0.07 TCGA-AA-A01P-01 6 7231856 7231856 G A RREB1 Missense_Mutation p.S1175N 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-AA-A01P-01 6 72960766 72960766 C T RIMS1 Nonsense_Mutation p.Q839* 0.19 TCGA-AA-A01P-01 6 74073402 74073402 G A KHDC3L Missense_Mutation p.R158H 0.32 tolerated(0.26) possibly_damaging(0.762) TCGA-AA-A01P-01 6 7414617 7414618 - A RIOK1 Frame_Shift_Ins p.E533Rfs*20 0.15 TCGA-AA-A01P-01 6 74517808 74517808 T C CD109 Silent p.P1064P 0.27 TCGA-AA-A01P-01 6 7891941 7891941 C T TXNDC5 Silent p.P215P 0.19 TCGA-AA-A01P-01 6 82462398 82462398 C T FAM46A 5'UTR 0.08 TCGA-AA-A01P-01 6 86195018 86195018 C T NT5E Missense_Mutation p.R273W 0.23 deleterious(0) possibly_damaging(0.776) TCGA-AA-A01P-01 6 89638748 89638748 C T RNGTT Missense_Mutation p.R108H 0.32 tolerated(0.09) benign(0.01) TCGA-AA-A01P-01 6 90396732 90396732 T C MDN1 Missense_Mutation p.M3821V 0.10 benign(0.001) TCGA-AA-A01P-01 6 96653239 96653239 A G FUT9 3'UTR 0.20 TCGA-AA-A01P-01 6 99283692 99283692 C A POU3F2 Missense_Mutation p.Q315K 0.20 deleterious(0) probably_damaging(0.992) TCGA-AA-A01P-01 6 9933072 9933072 C T OFCC1 Missense_Mutation p.D63N 0.22 deleterious(0) probably_damaging(0.997) TCGA-AA-A01P-01 7 100192801 100192801 C - FBXO24 Frame_Shift_Del p.L383Wfs*45 0.23 TCGA-AA-A01P-01 7 100230654 100230654 C T TFR2 Silent p.V273V 0.26 TCGA-AA-A01P-01 7 100732819 100732819 C T TRIM56 Silent p.N742N 0.18 TCGA-AA-A01P-01 7 1024858 1024858 C T CYP2W1 Missense_Mutation p.L182F 0.08 deleterious(0.04) probably_damaging(0.97) TCGA-AA-A01P-01 7 102738930 102738930 T C ARMC10 Missense_Mutation p.I321T 0.11 deleterious(0) benign(0.388) TCGA-AA-A01P-01 7 104719405 104719405 G A KMT2E Missense_Mutation p.A415T 0.19 deleterious(0) possibly_damaging(0.787) TCGA-AA-A01P-01 7 107580511 107580511 G A LAMB1 Silent p.S1228S 0.20 TCGA-AA-A01P-01 7 110764096 110764096 T A LRRN3 Missense_Mutation p.I423K 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 7 111405192 111405192 T - DOCK4 Frame_Shift_Del p.K1325Nfs*6 0.13 TCGA-AA-A01P-01 7 122377108 122377108 C G CADPS2 Missense_Mutation p.Q118H 0.13 deleterious(0.04) benign(0.078) TCGA-AA-A01P-01 7 122635198 122635198 C A TAS2R16 Missense_Mutation p.S164I 0.19 tolerated(0.15) benign(0.223) TCGA-AA-A01P-01 7 123301920 123301920 G A LMOD2 Missense_Mutation p.E94K 0.18 tolerated(0.17) benign(0.04) TCGA-AA-A01P-01 7 128477759 128477759 G A FLNC Missense_Mutation p.V307M 0.12 tolerated(0.35) benign(0.008) TCGA-AA-A01P-01 7 128494069 128494069 C T FLNC Missense_Mutation p.R2176C 0.20 tolerated(0.06) benign(0.019) TCGA-AA-A01P-01 7 128587985 128587985 G A IRF5 Silent p.T330T 0.21 TCGA-AA-A01P-01 7 134891927 134891927 G A WDR91 Missense_Mutation p.A180V 0.20 tolerated(0.11) benign(0.003) TCGA-AA-A01P-01 7 135269736 135269736 T A NUP205 Missense_Mutation p.L400H 0.24 deleterious(0) probably_damaging(0.967) TCGA-AA-A01P-01 7 138522621 138522621 A T KIAA1549 3'UTR 0.22 TCGA-AA-A01P-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-AA-A01P-01 7 143057313 143057313 C A FAM131B Intron 0.17 TCGA-AA-A01P-01 7 143929853 143929853 C T OR2A42 Silent p.G28G 0.18 TCGA-AA-A01P-01 7 148768290 148768290 C T ZNF786 Missense_Mutation p.R525H 0.22 deleterious(0.02) possibly_damaging(0.784) TCGA-AA-A01P-01 7 150710222 150710222 C T ATG9B 3'UTR 0.20 TCGA-AA-A01P-01 7 150711114 150711114 G A NOS3 Missense_Mutation p.E1157K 0.26 deleterious(0) probably_damaging(0.988) TCGA-AA-A01P-01 7 155532564 155532564 G A RBM33 Silent p.P631P 0.19 TCGA-AA-A01P-01 7 156451715 156451715 A G RNF32 Intron 0.29 TCGA-AA-A01P-01 7 1579709 1579709 C T MAFK Missense_Mutation p.R57C 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 7 2314850 2314850 C T SNX8 Silent p.S105S 0.14 TCGA-AA-A01P-01 7 28996923 28996923 C T AC005013.5 5'Flank 0.04 TCGA-AA-A01P-01 7 2956957 2956957 C T CARD11 Silent p.S890S 0.20 TCGA-AA-A01P-01 7 30197174 30197174 C T MTURN 3'UTR 0.13 TCGA-AA-A01P-01 7 36462288 36462288 C T ANLN Silent p.N782N 0.18 TCGA-AA-A01P-01 7 38835207 38835207 A G VPS41 Missense_Mutation p.V192A 0.22 deleterious(0) possibly_damaging(0.697) TCGA-AA-A01P-01 7 44747227 44747228 - C OGDH Frame_Shift_Ins p.N950Qfs*3 0.21 TCGA-AA-A01P-01 7 48467362 48467362 G T ABCA13 Splice_Site p.X4154_splice 0.11 TCGA-AA-A01P-01 7 51095669 51095669 G A COBL Missense_Mutation p.R1042C 0.20 tolerated(0.22) benign(0.001) TCGA-AA-A01P-01 7 53104597 53104597 T C POM121L12 3'UTR 0.32 TCGA-AA-A01P-01 7 5529616 5529616 T - FBXL18 Intron 0.18 TCGA-AA-A01P-01 7 5567354 5567354 G A ACTB 3'UTR 0.06 TCGA-AA-A01P-01 7 55886855 55886855 A G SEPT14 Missense_Mutation p.V261A 0.28 deleterious(0.04) benign(0.186) TCGA-AA-A01P-01 7 56046064 56046064 G A GBAS Missense_Mutation p.C85Y 0.21 tolerated(0.18) benign(0.009) TCGA-AA-A01P-01 7 65419202 65419202 A G VKORC1L1 Missense_Mutation p.N149S 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 7 72717980 72717980 G A NSUN5 Missense_Mutation p.R330C 0.20 deleterious(0) benign(0.366) TCGA-AA-A01P-01 7 75051222 75051222 C T POM121C Silent p.T771T 0.16 TCGA-AA-A01P-01 7 75615044 75615044 G A POR Missense_Mutation p.V516M 0.22 deleterious(0) possibly_damaging(0.824) TCGA-AA-A01P-01 7 82538192 82538192 C T PCLO Splice_Site p.X4479_splice 0.21 TCGA-AA-A01P-01 7 89748935 89748935 C T RP5-1121E10.2 Intron 0.19 TCGA-AA-A01P-01 7 90897542 90897542 G - FZD1 3'UTR 0.20 TCGA-AA-A01P-01 7 94185017 94185017 T - CASD1 Frame_Shift_Del p.C783Vfs*21 0.18 TCGA-AA-A01P-01 7 98563387 98563387 A G TRRAP Missense_Mutation p.M2342V 0.21 benign(0.024) TCGA-AA-A01P-01 7 99817868 99817868 G - PVRIG Frame_Shift_Del p.T86Pfs*238 0.26 TCGA-AA-A01P-01 8 100050689 100050689 T C VPS13B Silent p.I62I 0.24 TCGA-AA-A01P-01 8 120759047 120759047 T - TAF2 Frame_Shift_Del p.A1003Lfs*3 0.16 TCGA-AA-A01P-01 8 121220582 121220582 C T COL14A1 Missense_Mutation p.R435W 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-AA-A01P-01 8 124035970 124035970 A G DERL1 Silent p.L114L 0.17 TCGA-AA-A01P-01 8 12863856 12863856 G A KIAA1456 Missense_Mutation p.A49T 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-A01P-01 8 131072873 131072873 C T ASAP1 Silent p.T1048T 0.15 TCGA-AA-A01P-01 8 132991637 132991637 T - EFR3A Frame_Shift_Del p.C516Afs*8 0.14 TCGA-AA-A01P-01 8 139149483 139149483 C T FAM135B Missense_Mutation p.V1308I 0.24 tolerated(0.13) probably_damaging(0.932) TCGA-AA-A01P-01 8 143560832 143560832 C T BAI1 Silent p.G570G 0.26 TCGA-AA-A01P-01 8 143955720 143955720 G - CYP11B1 3'UTR 0.15 TCGA-AA-A01P-01 8 144239903 144239903 C A LY6H Splice_Site p.X84_splice 0.08 TCGA-AA-A01P-01 8 145095915 145095915 C T SPATC1 Missense_Mutation p.P405S 0.18 tolerated(0.49) benign(0.022) TCGA-AA-A01P-01 8 145624870 145624872 CTT - CPSF1 In_Frame_Del p.K422del 0.20 TCGA-AA-A01P-01 8 145700967 145700967 T C FOXH1 Missense_Mutation p.Q58R 0.14 deleterious(0) probably_damaging(0.997) TCGA-AA-A01P-01 8 145773375 145773375 G - ARHGAP39 Frame_Shift_Del p.S366Rfs*18 0.22 TCGA-AA-A01P-01 8 145998821 145998821 A G ZNF34 Missense_Mutation p.C505R 0.13 deleterious(0) probably_damaging(1) TCGA-AA-A01P-01 8 1616710 1616710 G A DLGAP2 Missense_Mutation p.A596T 0.18 tolerated(0.09) possibly_damaging(0.887) TCGA-AA-A01P-01 8 16859438 16859438 G A FGF20 Missense_Mutation p.P35L 0.26 tolerated(0.4) benign(0) TCGA-AA-A01P-01 8 17804814 17804814 T C PCM1 Silent p.A301A 0.27 TCGA-AA-A01P-01 8 1876698 1876698 A G ARHGEF10 Missense_Mutation p.M935V 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-AA-A01P-01 8 20110818 20110818 G A LZTS1 Silent p.G208G 0.16 TCGA-AA-A01P-01 8 22058651 22058651 C - BMP1 Intron 0.16 TCGA-AA-A01P-01 8 22106000 22106000 G A POLR3D Missense_Mutation p.D165N 0.18 deleterious(0.04) possibly_damaging(0.509) TCGA-AA-A01P-01 8 23294509 23294509 T C ENTPD4 Missense_Mutation p.T438A 0.16 deleterious(0.01) possibly_damaging(0.812) TCGA-AA-A01P-01 8 27308338 27308338 C T PTK2B Missense_Mutation p.R805W 0.14 deleterious(0) benign(0.339) TCGA-AA-A01P-01 8 27528787 27528787 G A SCARA3 Silent p.G580G 0.28 TCGA-AA-A01P-01 8 2836296 2836296 C A CSMD1 Missense_Mutation p.V2802L 0.15 possibly_damaging(0.879) TCGA-AA-A01P-01 8 29963355 29963355 G A LEPROTL1 Intron 0.16 TCGA-AA-A01P-01 8 30705146 30705146 C A TEX15 Missense_Mutation p.S463I 0.23 deleterious(0) benign(0.005) TCGA-AA-A01P-01 8 38810831 38810831 G A PLEKHA2 Missense_Mutation p.R240H 0.19 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 8 41557016 41557016 C T ANK1 Missense_Mutation p.D879N 0.24 tolerated(0.15) benign(0.001) TCGA-AA-A01P-01 8 43048988 43048988 T C HGSNAT Splice_Site p.X488_splice 0.29 TCGA-AA-A01P-01 8 43212102 43212102 C T POTEA RNA 0.24 TCGA-AA-A01P-01 8 48701525 48701525 G A PRKDC Missense_Mutation p.A3614V 0.17 benign(0.152) TCGA-AA-A01P-01 8 52336137 52336137 G A PXDNL Missense_Mutation p.T598M 0.18 tolerated(0.09) benign(0.301) TCGA-AA-A01P-01 8 61655611 61655611 C A CHD7 Silent p.L540L 0.18 TCGA-AA-A01P-01 8 75927084 75927084 C T CRISPLD1 Missense_Mutation p.R222W 0.18 deleterious(0) benign(0.339) TCGA-AA-A01P-01 8 95690487 95690487 G A ESRP1 Missense_Mutation p.A570T 0.17 tolerated(0.16) benign(0.303) TCGA-AA-A01P-01 8 96167699 96167699 A C PLEKHF2 3'UTR 0.21 TCGA-AA-A01P-01 9 100693490 100693490 G A HEMGN Missense_Mutation p.R63C 0.23 tolerated(0.26) benign(0.185) TCGA-AA-A01P-01 9 101765754 101765754 C T COL15A1 Missense_Mutation p.A362V 0.15 deleterious_low_confidence(0.03) benign(0.074) TCGA-AA-A01P-01 9 104124695 104124695 G T BAAT 3'UTR 0.28 TCGA-AA-A01P-01 9 105767539 105767539 A - CYLC2 Frame_Shift_Del p.G211Efs*22 0.14 TCGA-AA-A01P-01 9 109687976 109687976 G A ZNF462 Missense_Mutation p.A595T 0.21 benign(0.016) TCGA-AA-A01P-01 9 113341746 113341746 C T SVEP1 Silent p.P26P 0.22 TCGA-AA-A01P-01 9 114184268 114184268 G A KIAA0368 Missense_Mutation p.A641V 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A01P-01 9 115030439 115030439 T C PTBP3 Missense_Mutation p.T115A 0.26 tolerated(0.22) benign(0.02) TCGA-AA-A01P-01 9 116858357 116858357 C T KIF12 Missense_Mutation p.S152N 0.18 tolerated(0.85) benign(0.075) TCGA-AA-A01P-01 9 117825267 117825267 G T TNC Missense_Mutation p.P1321H 0.28 tolerated(0.07) benign(0.023) TCGA-AA-A01P-01 9 118949512 118949512 C A PAPPA Missense_Mutation p.N165K 0.15 tolerated(0.84) benign(0.009) TCGA-AA-A01P-01 9 125621237 125621237 T C RC3H2 Missense_Mutation p.D665G 0.11 deleterious(0) probably_damaging(0.98) TCGA-AA-A01P-01 9 126392730 126392730 G A DENND1A Missense_Mutation p.A215V 0.12 deleterious(0.04) possibly_damaging(0.591) TCGA-AA-A01P-01 9 129870365 129870365 G A ANGPTL2 Missense_Mutation p.P216S 0.25 tolerated(0.55) benign(0.003) TCGA-AA-A01P-01 9 129946283 129946283 C T RALGPS1 Intron 0.22 TCGA-AA-A01P-01 9 131467662 131467662 G - PKN3 Frame_Shift_Del p.V37Wfs*71 0.14 TCGA-AA-A01P-01 9 131586155 131586155 G A C9orf114 Silent p.F311F 0.22 TCGA-AA-A01P-01 9 135759343 135759343 G A C9orf9 Silent p.E3E 0.20 TCGA-AA-A01P-01 9 136404993 136404993 C T ADAMTSL2 Missense_Mutation p.P137L 0.07 deleterious(0) probably_damaging(0.998) TCGA-AA-A01P-01 9 136529005 136529005 G A SARDH 3'UTR 0.05 TCGA-AA-A01P-01 9 136913403 136913403 G A BRD3 Silent p.G296G 0.13 TCGA-AA-A01P-01 9 137300040 137300040 C - RXRA Frame_Shift_Del p.L111Wfs*57 0.09 TCGA-AA-A01P-01 9 137702136 137702136 G - COL5A1 Frame_Shift_Del p.D1172Tfs*104 0.17 TCGA-AA-A01P-01 9 139358049 139358049 C T SEC16A Missense_Mutation p.D1505N 0.11 deleterious(0) possibly_damaging(0.723) TCGA-AA-A01P-01 9 139837872 139837872 G T FBXW5 Missense_Mutation p.Q94K 0.21 deleterious(0) probably_damaging(0.966) TCGA-AA-A01P-01 9 139945517 139945517 C - ENTPD2 Frame_Shift_Del p.G204Vfs*171 0.08 TCGA-AA-A01P-01 9 140329325 140329325 G T ENTPD8 3'UTR 0.27 TCGA-AA-A01P-01 9 140330216 140330216 C T ENTPD8 Silent p.T372T 0.16 TCGA-AA-A01P-01 9 16436764 16436764 G T BNC2 Nonsense_Mutation p.C476* 0.19 TCGA-AA-A01P-01 9 2054628 2054628 G T SMARCA2 Nonsense_Mutation p.E360* 0.11 TCGA-AA-A01P-01 9 2718198 2718198 C T KCNV2 Silent p.R153R 0.24 TCGA-AA-A01P-01 9 27950347 27950347 C T LINGO2 Missense_Mutation p.R108H 0.19 tolerated(0.14) benign(0.016) TCGA-AA-A01P-01 9 32457301 32457301 C T DDX58 Missense_Mutation p.R866Q 0.17 tolerated(0.15) benign(0.227) TCGA-AA-A01P-01 9 33472349 33472349 C T NOL6 Missense_Mutation p.R39H 0.26 tolerated(0.1) benign(0.008) TCGA-AA-A01P-01 9 35958087 35958087 T - OR2S2 Frame_Shift_Del p.A4Pfs*7 0.13 TCGA-AA-A01P-01 9 37781981 37781981 A G EXOSC3 Splice_Site p.X209_splice 0.16 TCGA-AA-A01P-01 9 70177694 70177694 G A FOXD4L5 Missense_Mutation p.A97V 0.10 tolerated(0.16) possibly_damaging(0.689) TCGA-AA-A01P-01 9 71854929 71854929 T - TJP2 Frame_Shift_Del p.F844Sfs*12 0.19 TCGA-AA-A01P-01 9 79322854 79322854 T C PRUNE2 Missense_Mutation p.T1446A 0.19 tolerated(0.22) benign(0.05) TCGA-AA-A01P-01 9 79934521 79934521 G A VPS13A Missense_Mutation p.E1783K 0.12 deleterious(0) probably_damaging(0.999) TCGA-AA-A01P-01 9 80262674 80262676 CTT - GNA14 In_Frame_Del p.K12del 0.15 TCGA-AA-A01P-01 9 8733791 8733791 G A PTPRD Missense_Mutation p.T18M 0.20 deleterious(0.04) benign(0.201) TCGA-AA-A01P-01 9 88655711 88655712 - T GOLM1 Frame_Shift_Ins p.N182Efs*2 0.17 TCGA-AA-A01P-01 9 91606858 91606858 G A C9orf47 Silent p.R188R 0.15 TCGA-AA-A01P-01 9 91616303 91616303 C T S1PR3 Missense_Mutation p.A63V 0.16 tolerated(0.05) probably_damaging(0.996) TCGA-AA-A01P-01 9 96030038 96030038 A G WNK2 Missense_Mutation p.D1236G 0.13 unknown(0) TCGA-AA-A01P-01 X 100653792 100653792 C - GLA Frame_Shift_Del p.G261Vfs*8 0.16 TCGA-AA-A01P-01 X 10153218 10153218 T C CLCN4 Splice_Site p.X48_splice 0.05 TCGA-AA-A01P-01 X 101971055 101971055 G A GPRASP2 Missense_Mutation p.G420R 0.13 deleterious(0.04) probably_damaging(0.942) TCGA-AA-A01P-01 X 102529121 102529121 G A TCEAL5 Missense_Mutation p.T124M 0.20 tolerated(0.11) possibly_damaging(0.73) TCGA-AA-A01P-01 X 103267817 103267817 C T H2BFWT Missense_Mutation p.R139Q 0.21 tolerated(1) benign(0.009) TCGA-AA-A01P-01 X 107911576 107911576 G T COL4A5 Missense_Mutation p.G1211V 0.18 unknown(0) TCGA-AA-A01P-01 X 108708430 108708430 G A GUCY2F Nonsense_Mutation p.Q325* 0.20 TCGA-AA-A01P-01 X 112022857 112022857 G T AMOT Nonsense_Mutation p.S842* 0.16 TCGA-AA-A01P-01 X 11316902 11316902 T C AMELX Missense_Mutation p.Y141H 0.20 tolerated(0.42) unknown(0) TCGA-AA-A01P-01 X 11317019 11317019 C - AMELX Frame_Shift_Del p.L181Cfs*8 0.17 TCGA-AA-A01P-01 X 114424297 114424297 C - RBMXL3 Frame_Shift_Del p.G100Afs*176 0.22 TCGA-AA-A01P-01 X 114425107 114425107 G A RBMXL3 Missense_Mutation p.G368E 0.05 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-AA-A01P-01 X 119388771 119388771 A G ZBTB33 Missense_Mutation p.R501G 0.23 deleterious(0) probably_damaging(0.996) TCGA-AA-A01P-01 X 120181535 120181535 C T GLUD2 5'UTR 0.19 TCGA-AA-A01P-01 X 123041144 123041144 G A XIAP 3'UTR 0.13 TCGA-AA-A01P-01 X 123554201 123554201 C T TENM1 Missense_Mutation p.A1648T 0.22 deleterious(0.02) benign(0.001) TCGA-AA-A01P-01 X 125299071 125299071 C T DCAF12L2 Silent p.A279A 0.14 TCGA-AA-A01P-01 X 12734434 12734434 A C FRMPD4 Missense_Mutation p.E619A 0.22 tolerated_low_confidence(0.17) benign(0.001) TCGA-AA-A01P-01 X 128605243 128605243 T A SMARCA1 Missense_Mutation p.I835F 0.10 deleterious(0.02) possibly_damaging(0.618) TCGA-AA-A01P-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.33 TCGA-AA-A01P-01 X 139795999 139796000 - C LINC00632 3'UTR 0.22 TCGA-AA-A01P-01 X 149013937 149013937 T C MAGEA8 Silent p.N297N 0.24 TCGA-AA-A01P-01 X 150840657 150840657 G A PASD1 Silent p.Q480Q 0.21 TCGA-AA-A01P-01 X 151123901 151123901 G A GABRE Missense_Mutation p.A359V 0.14 deleterious(0) probably_damaging(0.961) TCGA-AA-A01P-01 X 152228668 152228668 C T PNMA3 3'UTR 0.20 TCGA-AA-A01P-01 X 153129362 153129362 G A L1CAM Missense_Mutation p.R1145C 0.22 deleterious(0) probably_damaging(0.982) TCGA-AA-A01P-01 X 153629213 153629213 C - RPL10 3'UTR 0.18 TCGA-AA-A01P-01 X 154444843 154444843 C T VBP1 Silent p.A28A 0.20 TCGA-AA-A01P-01 X 15599443 15599443 G C ACE2 Missense_Mutation p.T324S 0.20 tolerated(0.14) benign(0.256) TCGA-AA-A01P-01 X 16170910 16170910 A T GRPR 3'UTR 0.45 TCGA-AA-A01P-01 X 17745047 17745047 G A NHS Missense_Mutation p.E920K 0.19 tolerated(0.13) possibly_damaging(0.457) TCGA-AA-A01P-01 X 21875175 21875175 C T YY2 Silent p.N191N 0.15 TCGA-AA-A01P-01 X 224136 224136 G A GTPBP6 Missense_Mutation p.R211W 0.20 deleterious(0.03) possibly_damaging(0.676) TCGA-AA-A01P-01 X 2700137 2700137 A T XG Missense_Mutation p.Y53F 0.11 tolerated(0.67) benign(0.192) TCGA-AA-A01P-01 X 2835914 2835914 G A ARSD Missense_Mutation p.T265M 0.23 deleterious(0.01) possibly_damaging(0.564) TCGA-AA-A01P-01 X 30268653 30268653 C T MAGEB1 Missense_Mutation p.R15C 0.22 deleterious(0.04) possibly_damaging(0.839) TCGA-AA-A01P-01 X 32536245 32536245 C A DMD Missense_Mutation p.L724F 0.18 probably_damaging(0.943) TCGA-AA-A01P-01 X 41394006 41394006 T - CASK Frame_Shift_Del p.N752Tfs*40 0.13 TCGA-AA-A01P-01 X 46359512 46359512 T - ZNF674 Frame_Shift_Del p.A505Pfs*32 0.15 TCGA-AA-A01P-01 X 47004068 47004068 C T NDUFB11 Missense_Mutation p.G4E 0.16 tolerated_low_confidence(0.07) unknown(0) TCGA-AA-A01P-01 X 47426415 47426415 C - ARAF Frame_Shift_Del p.R255Gfs*37 0.20 TCGA-AA-A01P-01 X 48336406 48336406 C T FTSJ1 5'UTR 0.12 TCGA-AA-A01P-01 X 48372643 48372643 C T PORCN Silent p.Y245Y 0.20 TCGA-AA-A01P-01 X 48382420 48382420 C T EBP Silent p.Y87Y 0.21 TCGA-AA-A01P-01 X 49034779 49034779 G A PRICKLE3 Missense_Mutation p.R204C 0.37 deleterious(0) probably_damaging(0.995) TCGA-AA-A01P-01 X 49048086 49048086 G A SYP Silent p.Y250Y 0.20 TCGA-AA-A01P-01 X 49081389 49081389 C T CACNA1F Missense_Mutation p.G582S 0.09 tolerated(1) benign(0.084) TCGA-AA-A01P-01 X 50339761 50339761 G T SHROOM4 Silent p.I1472I 0.20 TCGA-AA-A01P-01 X 51149993 51149993 C T CXorf67 Missense_Mutation p.A42V 0.24 tolerated(0.13) probably_damaging(0.986) TCGA-AA-A01P-01 X 51239421 51239421 G A NUDT11 5'UTR 0.24 TCGA-AA-A01P-01 X 51488409 51488409 A - GSPT2 Frame_Shift_Del p.K564Nfs*13 0.16 TCGA-AA-A01P-01 X 53111923 53111923 G - TSPYL2 Frame_Shift_Del p.I84Sfs*63 0.12 TCGA-AA-A01P-01 X 53223518 53223518 G T KDM5C Missense_Mutation p.L1281I 0.29 deleterious(0) probably_damaging(0.989) TCGA-AA-A01P-01 X 53563202 53563202 A G HUWE1 Missense_Mutation p.M4146T 0.25 unknown(0) TCGA-AA-A01P-01 X 55515316 55515316 G A USP51 Silent p.S19S 0.22 TCGA-AA-A01P-01 X 57623823 57623823 T - ZXDB 3'UTR 0.14 TCGA-AA-A01P-01 X 64709199 64709199 T C ZC3H12B Missense_Mutation p.I173T 0.22 tolerated(0.69) benign(0) TCGA-AA-A01P-01 X 66765619 66765619 G A AR Missense_Mutation p.A211T 0.13 tolerated_low_confidence(0.06) benign(0.281) TCGA-AA-A01P-01 X 69699035 69699035 C T DLG3 Nonsense_Mutation p.R481* 0.22 TCGA-AA-A01P-01 X 70288022 70288022 C T SNX12 Silent p.A45A 0.08 TCGA-AA-A01P-01 X 70316385 70316385 C G FOXO4 Missense_Mutation p.P3A 0.19 tolerated_low_confidence(0.17) benign(0.16) TCGA-AA-A01P-01 X 70361088 70361088 G A MED12 Silent p.Q2092Q 0.12 TCGA-AA-A01P-01 X 71351057 71351057 T C RGAG4 Missense_Mutation p.S112G 0.35 tolerated_low_confidence(0.47) benign(0.002) TCGA-AA-A01P-01 X 71353958 71353958 T C NHSL2 Missense_Mutation p.Y152H 0.12 tolerated(0.09) benign(0.089) TCGA-AA-A01P-01 X 79283562 79283562 C T TBX22 Silent p.G312G 0.14 TCGA-AA-A01P-01 X 79698524 79698524 G T FAM46D Silent p.V162V 0.14 TCGA-AA-A01P-01 X 79984354 79984354 A G BRWD3 Missense_Mutation p.M428T 0.20 deleterious(0) possibly_damaging(0.461) TCGA-AA-A01P-01 X 83129490 83129490 G A CYLC1 Missense_Mutation p.G592R 0.12 deleterious(0.01) probably_damaging(0.937) TCGA-AA-A01P-01 X 86880632 86880632 G T KLHL4 Missense_Mutation p.S387I 0.22 tolerated(0.06) possibly_damaging(0.549) TCGA-AA-A01P-01 X 91134077 91134077 T A PCDH11X Silent p.P946P 0.21 TCGA-AA-A01P-01 X 9863925 9863925 C T SHROOM2 Silent p.G659G 0.32 TCGA-AA-A01P-01 X 9915028 9915028 C T SHROOM2 3'UTR 0.20 TCGA-AA-A01P-01 X 99891633 99891633 A G TSPAN6 Missense_Mutation p.V20A 0.17 deleterious(0.01) benign(0.04) TCGA-AA-A01R-01 10 101590551 101590551 C T ABCC2 Silent p.D942D 0.52 TCGA-AA-A01R-01 10 102054399 102054399 G A PKD2L1 Missense_Mutation p.R518W 0.25 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 10 102850083 102850083 G A TLX1NB 5'UTR 0.20 TCGA-AA-A01R-01 10 103368671 103368671 G A DPCD Missense_Mutation p.A162T 0.18 deleterious(0.03) probably_damaging(0.964) TCGA-AA-A01R-01 10 103534501 103534501 C T FGF8 Missense_Mutation p.G109S 0.25 deleterious(0.01) benign(0.213) TCGA-AA-A01R-01 10 103907146 103907146 G A PPRC1 Missense_Mutation p.R1466Q 0.60 deleterious_low_confidence(0) benign(0.238) TCGA-AA-A01R-01 10 103920362 103920362 C T NOLC1 Missense_Mutation p.T418M 0.21 tolerated_low_confidence(0.12) benign(0) TCGA-AA-A01R-01 10 104139294 104139294 C T GBF1 Silent p.C1553C 0.17 TCGA-AA-A01R-01 10 104183292 104183292 A G CUEDC2 Missense_Mutation p.V252A 0.25 deleterious(0) benign(0.119) TCGA-AA-A01R-01 10 104230800 104230800 C A TMEM180 Silent p.A210A 0.22 TCGA-AA-A01R-01 10 104557748 104557748 A G WBP1L Splice_Site p.X31_splice 0.28 TCGA-AA-A01R-01 10 104572927 104572927 C T WBP1L Missense_Mutation p.R311W 0.09 deleterious(0.05) benign(0.031) TCGA-AA-A01R-01 10 105139363 105139363 A G TAF5 Splice_Site p.X372_splice 0.47 TCGA-AA-A01R-01 10 107023248 107023248 C T SORCS3 3'UTR 0.17 TCGA-AA-A01R-01 10 112838875 112838875 C T ADRA2A Missense_Mutation p.A374V 0.57 tolerated(0.54) benign(0.257) TCGA-AA-A01R-01 10 115540378 115540378 C T PLEKHS1 3'Flank 0.51 TCGA-AA-A01R-01 10 115618353 115618353 T C NHLRC2 Missense_Mutation p.V82A 0.26 deleterious(0) possibly_damaging(0.79) TCGA-AA-A01R-01 10 115668361 115668361 T C NHLRC2 3'UTR 0.63 TCGA-AA-A01R-01 10 115804949 115804949 T G ADRB1 Missense_Mutation p.L353R 0.18 deleterious(0.04) benign(0.286) TCGA-AA-A01R-01 10 115986880 115986880 A T TDRD1 Missense_Mutation p.L1075F 0.48 deleterious(0) benign(0.001) TCGA-AA-A01R-01 10 116045771 116045771 C T VWA2 Silent p.D357D 0.52 TCGA-AA-A01R-01 10 118434719 118434719 G A HSPA12A Missense_Mutation p.P534L 0.56 deleterious(0.04) possibly_damaging(0.608) TCGA-AA-A01R-01 10 118441315 118441315 G A HSPA12A Silent p.S303S 0.24 TCGA-AA-A01R-01 10 118969176 118969176 G A KCNK18 Missense_Mutation p.R174H 0.43 tolerated(0.19) benign(0) TCGA-AA-A01R-01 10 121569645 121569645 G A INPP5F Missense_Mutation p.A535T 0.49 tolerated(0.55) probably_damaging(0.987) TCGA-AA-A01R-01 10 121612620 121612620 G A MCMBP Silent p.D172D 0.06 TCGA-AA-A01R-01 10 124403039 124403039 C T DMBT1 3'UTR 0.40 TCGA-AA-A01R-01 10 124909222 124909222 G A HMX2 Silent p.R135R 0.53 TCGA-AA-A01R-01 10 124909545 124909545 C T HMX2 Missense_Mutation p.P243L 0.46 deleterious(0) probably_damaging(0.932) TCGA-AA-A01R-01 10 127789788 127789788 C T ADAM12 Missense_Mutation p.R258Q 0.51 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 10 129869112 129869112 C T PTPRE Missense_Mutation p.T445M 0.46 deleterious(0.01) possibly_damaging(0.899) TCGA-AA-A01R-01 10 129906377 129906377 C T MKI67 Missense_Mutation p.A1243T 0.22 tolerated(0.65) possibly_damaging(0.53) TCGA-AA-A01R-01 10 132902562 132902562 C T TCERG1L Missense_Mutation p.R484H 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 10 132944882 132944882 T A TCERG1L Missense_Mutation p.N359I 0.28 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 10 133961495 133961495 G A JAKMIP3 Missense_Mutation p.E597K 0.32 deleterious(0) possibly_damaging(0.699) TCGA-AA-A01R-01 10 135032422 135032422 A G KNDC1 Missense_Mutation p.S1589G 0.55 tolerated(1) benign(0.002) TCGA-AA-A01R-01 10 135044946 135044946 A G UTF1 Nonstop_Mutation p.*342Wext*? 0.34 TCGA-AA-A01R-01 10 135085361 135085361 C T ADAM8 Missense_Mutation p.R352H 0.25 tolerated(0.35) benign(0.001) TCGA-AA-A01R-01 10 135106712 135106712 G A TUBGCP2 Silent p.Y313Y 0.46 TCGA-AA-A01R-01 10 135107177 135107177 A G TUBGCP2 Missense_Mutation p.L266P 0.17 deleterious(0) possibly_damaging(0.786) TCGA-AA-A01R-01 10 135165619 135165619 T C PRAP1 Silent p.G79G 0.28 TCGA-AA-A01R-01 10 135204929 135204929 G A RP11-108K14.8 Missense_Mutation p.A42T 0.39 tolerated(0.46) benign(0.002) TCGA-AA-A01R-01 10 13698982 13698982 C T FRMD4A Silent p.T869T 0.47 TCGA-AA-A01R-01 10 15115237 15115237 C A OLAH 3'UTR 0.13 TCGA-AA-A01R-01 10 16989308 16989308 G T CUBN Missense_Mutation p.D1756E 0.23 tolerated(1) benign(0.014) TCGA-AA-A01R-01 10 21804079 21804079 G A SKIDA1 Silent p.G891G 0.34 TCGA-AA-A01R-01 10 25887777 25887777 G A GPR158 Nonsense_Mutation p.W1074* 0.43 TCGA-AA-A01R-01 10 28196631 28196631 G A ARMC4 Silent p.S857S 0.33 TCGA-AA-A01R-01 10 3109884 3109884 G A PFKP Missense_Mutation p.G33S 0.29 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 10 31810806 31810806 C T ZEB1 Missense_Mutation p.T849M 0.29 deleterious(0.01) possibly_damaging(0.901) TCGA-AA-A01R-01 10 32197261 32197261 G A ARHGAP12 Missense_Mutation p.R175C 0.30 tolerated(0.06) possibly_damaging(0.677) TCGA-AA-A01R-01 10 34630665 34630665 A G PARD3 Silent p.L769L 0.31 TCGA-AA-A01R-01 10 43089361 43089361 C T ZNF33B Missense_Mutation p.R346Q 0.35 tolerated(0.6) probably_damaging(0.999) TCGA-AA-A01R-01 10 43288513 43288513 C T BMS1 Missense_Mutation p.A337V 0.25 deleterious(0.02) benign(0.027) TCGA-AA-A01R-01 10 45467064 45467064 C T RASSF4 Intron 0.45 TCGA-AA-A01R-01 10 45496203 45496203 G T C10orf25 Missense_Mutation p.S35R 0.25 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-AA-A01R-01 10 46252580 46252580 A - FAM21C Frame_Shift_Del p.K516Rfs*41 0.20 TCGA-AA-A01R-01 10 47087896 47087896 G A NPY4R Silent p.R371R 0.17 TCGA-AA-A01R-01 10 48372221 48372221 G A ZNF488 3'UTR 0.25 TCGA-AA-A01R-01 10 48372979 48372979 G A ZNF488 3'UTR 0.37 TCGA-AA-A01R-01 10 48388523 48388523 G A RBP3 Silent p.N785N 0.28 TCGA-AA-A01R-01 10 48429259 48429259 G A GDF10 Silent p.I209I 0.26 TCGA-AA-A01R-01 10 4877927 4877927 C T AKR1E2 Nonsense_Mutation p.R129* 0.29 TCGA-AA-A01R-01 10 50285340 50285340 G A VSTM4 Silent p.C186C 0.40 TCGA-AA-A01R-01 10 51579211 51579211 C T NCOA4 Missense_Mutation p.R40W 0.33 deleterious(0.04) benign(0.051) TCGA-AA-A01R-01 10 5255064 5255064 G A AKR1C4 Missense_Mutation p.R263H 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-AA-A01R-01 10 5694896 5694896 G A ASB13 Missense_Mutation p.T54M 0.41 deleterious(0) probably_damaging(0.985) TCGA-AA-A01R-01 10 5957384 5957384 C T FBXO18 Missense_Mutation p.T523M 0.44 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 10 61028434 61028434 C T FAM13C Missense_Mutation p.R274H 0.33 tolerated(0.14) probably_damaging(1) TCGA-AA-A01R-01 10 6154291 6154291 G A RBM17 Missense_Mutation p.G275S 0.37 deleterious(0.03) benign(0.082) TCGA-AA-A01R-01 10 61566688 61566688 G A CCDC6 Silent p.D332D 0.30 TCGA-AA-A01R-01 10 61829890 61829890 C T ANK3 Silent p.T3583T 0.33 TCGA-AA-A01R-01 10 61842392 61842392 G T ANK3 Missense_Mutation p.T1435N 0.27 probably_damaging(0.936) TCGA-AA-A01R-01 10 61959898 61959898 C A ANK3 Missense_Mutation p.A494S 0.37 probably_damaging(0.967) TCGA-AA-A01R-01 10 62671289 62671289 G A RHOBTB1 Silent p.D4D 0.26 TCGA-AA-A01R-01 10 72358173 72358173 G A PRF1 Missense_Mutation p.T435M 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 10 7269822 7269822 G A SFMBT2 Nonsense_Mutation p.R400* 0.12 TCGA-AA-A01R-01 10 73455225 73455225 C T CDH23 Silent p.D372D 0.43 TCGA-AA-A01R-01 10 73553361 73553361 A G CDH23 5'Flank 0.57 TCGA-AA-A01R-01 10 73567274 73567274 C T CDH23 Silent p.A530A 0.22 TCGA-AA-A01R-01 10 7409783 7409783 C T SFMBT2 Silent p.P88P 0.22 TCGA-AA-A01R-01 10 75198057 75198057 A G PPP3CB Silent p.S507S 0.54 TCGA-AA-A01R-01 10 75406859 75406859 G A SYNPO2L Missense_Mutation p.R851W 0.20 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 10 76789769 76789769 C T KAT6B Silent p.S1729S 0.23 TCGA-AA-A01R-01 10 77158342 77158342 G A ZNF503 3'UTR 0.46 TCGA-AA-A01R-01 10 7765503 7765503 C T ITIH2 Silent p.G319G 0.34 TCGA-AA-A01R-01 10 78651307 78651307 G A KCNMA1 Silent p.L1089L 0.38 TCGA-AA-A01R-01 10 82180343 82180343 G A FAM213A Silent p.K40K 0.17 TCGA-AA-A01R-01 10 85962823 85962823 G T CDHR1 Missense_Mutation p.A243S 0.24 deleterious(0.05) benign(0.027) TCGA-AA-A01R-01 10 87407088 87407088 A G GRID1 Silent p.Y688Y 0.20 TCGA-AA-A01R-01 10 88768400 88768400 C T RP11-96C23.10 3'Flank 0.06 TCGA-AA-A01R-01 10 88911269 88911269 A - FAM35A Frame_Shift_Del p.K54Nfs*25 0.31 TCGA-AA-A01R-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.26 TCGA-AA-A01R-01 10 89265140 89265140 G A MINPP1 Silent p.Q156Q 0.04 TCGA-AA-A01R-01 10 90534233 90534233 C T LIPN Nonsense_Mutation p.R275* 0.55 TCGA-AA-A01R-01 10 90537809 90537809 C T LIPN Missense_Mutation p.T336I 0.46 tolerated(0.25) probably_damaging(1) TCGA-AA-A01R-01 10 93252213 93252213 A G HECTD2 Silent p.L468L 0.47 TCGA-AA-A01R-01 10 97192278 97192278 C T SORBS1 Silent p.S76S 0.50 TCGA-AA-A01R-01 10 97366614 97366614 G A ALDH18A1 Nonsense_Mutation p.R765* 0.22 TCGA-AA-A01R-01 10 98823276 98823276 C T SLIT1 Silent p.S243S 0.49 TCGA-AA-A01R-01 10 99216547 99216547 C T ZDHHC16 Missense_Mutation p.R345W 0.49 deleterious(0) possibly_damaging(0.726) TCGA-AA-A01R-01 10 99439502 99439502 C T AVPI1 Missense_Mutation p.R54Q 0.50 deleterious(0.02) benign(0.346) TCGA-AA-A01R-01 11 100064254 100064254 A C CNTN5 Silent p.T581T 0.26 TCGA-AA-A01R-01 11 101375176 101375176 C T TRPC6 Missense_Mutation p.R175Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 11 102702662 102702662 A G MMP3 3'Flank 0.57 TCGA-AA-A01R-01 11 102706736 102706736 T G MMP3 3'UTR 0.27 TCGA-AA-A01R-01 11 102985923 102985923 G A DYNC2H1 Missense_Mutation p.D174N 0.38 possibly_damaging(0.875) TCGA-AA-A01R-01 11 103070177 103070177 T C DYNC2H1 Missense_Mutation p.L2687P 0.32 benign(0.004) TCGA-AA-A01R-01 11 103908374 103908374 G A DDI1 Missense_Mutation p.R275Q 0.30 deleterious(0) possibly_damaging(0.634) TCGA-AA-A01R-01 11 104034683 104034683 G A PDGFD 5'UTR 0.43 TCGA-AA-A01R-01 11 108218036 108218036 A G ATM Missense_Mutation p.H2872R 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 11 108382478 108382478 T C EXPH5 Missense_Mutation p.I1252M 0.32 deleterious(0) probably_damaging(0.943) TCGA-AA-A01R-01 11 109294853 109294853 C T C11orf87 Missense_Mutation p.P165L 0.35 deleterious_low_confidence(0.01) benign(0.077) TCGA-AA-A01R-01 11 1097326 1097326 C A MUC2 Missense_Mutation p.P2248T 0.48 unknown(0) TCGA-AA-A01R-01 11 113075148 113075148 G A NCAM1 Missense_Mutation p.D149N 0.29 tolerated(0.25) benign(0.314) TCGA-AA-A01R-01 11 113659973 113659973 G A ATF4P4 RNA 0.33 TCGA-AA-A01R-01 11 113848606 113848606 G A HTR3A Missense_Mutation p.V67I 0.22 tolerated(0.2) benign(0.157) TCGA-AA-A01R-01 11 117265189 117265189 C T CEP164 Missense_Mutation p.R914W 0.29 deleterious(0.05) benign(0.035) TCGA-AA-A01R-01 11 118081200 118081200 A G AMICA1 Splice_Site p.X142_splice 0.29 TCGA-AA-A01R-01 11 118773385 118773385 G A BCL9L Missense_Mutation p.P356L 0.62 probably_damaging(0.913) TCGA-AA-A01R-01 11 118773976 118773976 C T BCL9L Missense_Mutation p.V240I 0.32 benign(0.133) TCGA-AA-A01R-01 11 118952370 118952370 C T VPS11 3'UTR 0.25 TCGA-AA-A01R-01 11 119535465 119535465 A G PVRL1 Missense_Mutation p.Y516H 0.30 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 11 120744870 120744870 C A GRIK4 Silent p.S334S 0.44 TCGA-AA-A01R-01 11 121478873 121478873 A T SORL1 Missense_Mutation p.I1743L 0.31 tolerated(0.33) benign(0.003) TCGA-AA-A01R-01 11 122756862 122756862 A T C11orf63 Missense_Mutation p.E102V 0.34 tolerated(0.11) benign(0.046) TCGA-AA-A01R-01 11 122944275 122944275 A G CLMP Silent p.S343S 0.32 TCGA-AA-A01R-01 11 122944456 122944456 C T CLMP Missense_Mutation p.R283H 0.28 tolerated(0.1) benign(0.013) TCGA-AA-A01R-01 11 124747423 124747423 T C ROBO3 Missense_Mutation p.M952T 0.27 deleterious(0.01) benign(0.034) TCGA-AA-A01R-01 11 124789978 124789978 G A HEPACAM 3'UTR 0.22 TCGA-AA-A01R-01 11 1261149 1261149 C A MUC5B Missense_Mutation p.P1235H 0.47 unknown(0) TCGA-AA-A01R-01 11 129734509 129734509 G A NFRKB 3'UTR 0.24 TCGA-AA-A01R-01 11 1311608 1311608 C T TOLLIP Missense_Mutation p.R72H 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01R-01 11 133801988 133801988 C T IGSF9B Missense_Mutation p.G363D 0.32 deleterious(0) probably_damaging(0.989) TCGA-AA-A01R-01 11 134127059 134127059 C T ACAD8 Silent p.G96G 0.27 TCGA-AA-A01R-01 11 14865557 14865557 T C PDE3B Silent p.A835A 0.26 TCGA-AA-A01R-01 11 16812635 16812635 C T PLEKHA7 Missense_Mutation p.V953M 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 11 20385668 20385668 A G HTATIP2 Intron 0.33 TCGA-AA-A01R-01 11 21392488 21392488 G A NELL1 Missense_Mutation p.E547K 0.40 deleterious(0) possibly_damaging(0.89) TCGA-AA-A01R-01 11 27406981 27406981 C T LGR4 Missense_Mutation p.E146K 0.35 tolerated(0.28) benign(0.032) TCGA-AA-A01R-01 11 30033552 30033552 C T KCNA4 Missense_Mutation p.R225H 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-AA-A01R-01 11 3129055 3129055 G A OSBPL5 Missense_Mutation p.S271L 0.29 tolerated(0.09) benign(0.006) TCGA-AA-A01R-01 11 31455073 31455073 A T IMMP1L Missense_Mutation p.N122K 0.30 deleterious(0) benign(0.092) TCGA-AA-A01R-01 11 33106558 33106558 G A CSTF3 3'UTR 0.44 TCGA-AA-A01R-01 11 34098006 34098006 G A CAPRIN1 Missense_Mutation p.R197Q 0.33 deleterious(0) benign(0.295) TCGA-AA-A01R-01 11 35457675 35457675 G A PAMR1 Missense_Mutation p.P387L 0.28 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 11 3716744 3716744 G T NUP98 Missense_Mutation p.L1368I 0.32 deleterious(0.04) probably_damaging(0.995) TCGA-AA-A01R-01 11 44105040 44105040 C A ACCS Missense_Mutation p.L441M 0.33 tolerated(0.06) probably_damaging(0.998) TCGA-AA-A01R-01 11 45246044 45246044 A C PRDM11 Missense_Mutation p.D340A 0.41 deleterious_low_confidence(0) benign(0.341) TCGA-AA-A01R-01 11 45671416 45671416 G A CHST1 Missense_Mutation p.S353L 0.34 deleterious(0) probably_damaging(0.991) TCGA-AA-A01R-01 11 45671693 45671693 C T CHST1 Missense_Mutation p.G261R 0.41 deleterious(0.02) probably_damaging(0.917) TCGA-AA-A01R-01 11 45931566 45931566 A G PEX16 3'UTR 0.18 TCGA-AA-A01R-01 11 4608339 4608339 G T OR52I2 Silent p.V99V 0.27 TCGA-AA-A01R-01 11 4615487 4615487 G T OR52I1 Silent p.V73V 0.05 TCGA-AA-A01R-01 11 46393057 46393057 C T DGKZ Silent p.C409C 0.34 TCGA-AA-A01R-01 11 46564499 46564499 C T AMBRA1 Silent p.S266S 0.37 TCGA-AA-A01R-01 11 4703571 4703571 G A OR51E2 Missense_Mutation p.A124V 0.23 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 11 47199390 47199390 C T PACSIN3 3'UTR 0.22 TCGA-AA-A01R-01 11 47593081 47593081 T A PTPMT1 Missense_Mutation p.I169N 0.28 deleterious(0) probably_damaging(0.995) TCGA-AA-A01R-01 11 4824753 4824753 T C OR52R1 Missense_Mutation p.I286M 0.31 tolerated(0.09) benign(0.016) TCGA-AA-A01R-01 11 49831320 49831320 G C RP11-707M1.1 RNA 0.48 TCGA-AA-A01R-01 11 5221093 5221093 C T OR51V1 Missense_Mutation p.V280M 0.30 tolerated(0.08) benign(0.072) TCGA-AA-A01R-01 11 5410752 5410752 C T OR51M1 Missense_Mutation p.P42S 0.29 deleterious(0.01) benign(0.062) TCGA-AA-A01R-01 11 55657418 55657418 G A TRIM51 Silent p.R254R 0.27 TCGA-AA-A01R-01 11 5566132 5566132 A G OR52H1 Missense_Mutation p.F208L 0.22 tolerated(1) probably_damaging(0.999) TCGA-AA-A01R-01 11 55927362 55927362 C T OR8K5 Silent p.L144L 0.32 TCGA-AA-A01R-01 11 56058495 56058495 G A OR8H1 Missense_Mutation p.T15M 0.22 tolerated(1) benign(0.001) TCGA-AA-A01R-01 11 57558938 57558938 G A CTNND1 5'UTR 0.24 TCGA-AA-A01R-01 11 57561544 57561544 C T CTNND1 Silent p.N86N 0.36 TCGA-AA-A01R-01 11 58377437 58377437 C T ZFP91 Nonsense_Mutation p.R169* 0.33 TCGA-AA-A01R-01 11 60701034 60701034 C T TMEM132A Silent p.A460A 0.41 TCGA-AA-A01R-01 11 611718 611718 C T PHRF1 Missense_Mutation p.R1630C 0.62 deleterious(0) probably_damaging(0.942) TCGA-AA-A01R-01 11 61213502 61213502 C T SDHAF2 Missense_Mutation p.R154C 0.33 tolerated(0.09) possibly_damaging(0.8) TCGA-AA-A01R-01 11 61631312 61631312 C A FADS2 Intron 0.34 TCGA-AA-A01R-01 11 61897859 61897859 C T INCENP Missense_Mutation p.P287L 0.19 tolerated(0.06) unknown(0) TCGA-AA-A01R-01 11 62289853 62289853 G T AHNAK Silent p.G4012G 0.28 TCGA-AA-A01R-01 11 62298396 62298396 C T AHNAK Missense_Mutation p.E1165K 0.37 benign(0.388) TCGA-AA-A01R-01 11 62545450 62545450 G A TAF6L Missense_Mutation p.A79T 0.28 tolerated(0.15) benign(0.052) TCGA-AA-A01R-01 11 62567946 62567946 G A NXF1 Missense_Mutation p.R307W 0.27 tolerated(0.91) benign(0) TCGA-AA-A01R-01 11 62744677 62744677 G A SLC22A6 Missense_Mutation p.T515M 0.30 deleterious(0) probably_damaging(0.992) TCGA-AA-A01R-01 11 63998321 63998321 G A DNAJC4 5'UTR 0.34 TCGA-AA-A01R-01 11 64521142 64521142 C T PYGM Missense_Mutation p.A418T 0.40 tolerated(0.29) benign(0.001) TCGA-AA-A01R-01 11 6462125 6462125 G T HPX Silent p.A23A 0.31 TCGA-AA-A01R-01 11 64669629 64669629 C T ATG2A Silent p.A1308A 0.37 TCGA-AA-A01R-01 11 64677335 64677335 G A ATG2A Missense_Mutation p.T642M 0.43 tolerated(0.23) benign(0.029) TCGA-AA-A01R-01 11 64684470 64684470 G T ATG2A Missense_Mutation p.S46R 0.29 deleterious(0.01) benign(0.11) TCGA-AA-A01R-01 11 6477898 6477898 C T TRIM3 Missense_Mutation p.R353Q 0.31 tolerated(0.17) benign(0.007) TCGA-AA-A01R-01 11 64824858 64824858 T C NAALADL1 Silent p.V196V 0.29 TCGA-AA-A01R-01 11 65003966 65003966 G A SLC22A20 RNA 0.28 TCGA-AA-A01R-01 11 65111482 65111482 C T DPF2 Silent p.A193A 0.33 TCGA-AA-A01R-01 11 6532625 6532625 G A DNHD1 Missense_Mutation p.R453H 0.31 benign(0.052) TCGA-AA-A01R-01 11 65367228 65367228 G A MAP3K11 Missense_Mutation p.R615W 0.35 deleterious(0.01) benign(0.442) TCGA-AA-A01R-01 11 65418110 65418110 C T SIPA1 Missense_Mutation p.A1018V 0.31 deleterious(0.02) possibly_damaging(0.794) TCGA-AA-A01R-01 11 65638763 65638763 A G EFEMP2 Missense_Mutation p.Y78H 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 11 65652460 65652460 G A FIBP Silent p.C262C 0.39 TCGA-AA-A01R-01 11 6567562 6567562 G A DNHD1 Missense_Mutation p.R1798H 0.23 benign(0.284) TCGA-AA-A01R-01 11 6578029 6578029 G A DNHD1 Missense_Mutation p.A2502T 0.21 possibly_damaging(0.888) TCGA-AA-A01R-01 11 66000459 66000459 G A PACS1 Missense_Mutation p.R587Q 0.32 tolerated(0.69) benign(0.233) TCGA-AA-A01R-01 11 66030380 66030380 G A KLC2 Missense_Mutation p.A209T 0.29 tolerated(0.1) possibly_damaging(0.854) TCGA-AA-A01R-01 11 66030507 66030507 G A KLC2 Missense_Mutation p.R251Q 0.31 deleterious(0) benign(0.336) TCGA-AA-A01R-01 11 66043617 66043617 C T RAB1B Missense_Mutation p.R172W 0.44 deleterious(0) benign(0.311) TCGA-AA-A01R-01 11 66105293 66105293 C T BRMS1 Intron 0.27 TCGA-AA-A01R-01 11 66238807 66238807 G A PELI3 Missense_Mutation p.V107I 0.36 tolerated(0.13) possibly_damaging(0.508) TCGA-AA-A01R-01 11 66241211 66241211 C T PELI3 Nonsense_Mutation p.R219* 0.25 TCGA-AA-A01R-01 11 66468736 66468736 C T SPTBN2 Missense_Mutation p.R945H 0.27 deleterious(0.01) benign(0.193) TCGA-AA-A01R-01 11 6649973 6649973 G T DCHS1 Silent p.T1750T 0.33 TCGA-AA-A01R-01 11 66619987 66619987 C T PC Missense_Mutation p.R583H 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 11 66625911 66625911 C T LRFN4 Silent p.S232S 0.30 TCGA-AA-A01R-01 11 66816271 66816271 G A SYT12 3'UTR 0.57 TCGA-AA-A01R-01 11 67012860 67012860 C T KDM2A Silent p.C588C 0.27 TCGA-AA-A01R-01 11 67164735 67164735 C T RAD9A Missense_Mutation p.R320W 0.05 deleterious(0.03) benign(0.006) TCGA-AA-A01R-01 11 67258411 67258411 C T AIP Missense_Mutation p.R314W 0.31 deleterious(0) probably_damaging(0.983) TCGA-AA-A01R-01 11 674719 674719 C T DEAF1 Silent p.A440A 0.56 TCGA-AA-A01R-01 11 67837693 67837693 G A CHKA Missense_Mutation p.L278F 0.35 tolerated(0.11) probably_damaging(0.996) TCGA-AA-A01R-01 11 67925554 67925554 G A SUV420H1 Silent p.N753N 0.27 TCGA-AA-A01R-01 11 68201131 68201131 C T LRP5 Silent p.P1275P 0.39 TCGA-AA-A01R-01 11 68682435 68682435 C T IGHMBP2 Missense_Mutation p.R286W 0.27 deleterious(0) probably_damaging(0.978) TCGA-AA-A01R-01 11 68773151 68773151 G A MRGPRF Silent p.C209C 0.30 TCGA-AA-A01R-01 11 68846071 68846071 T C TPCN2 Splice_Site p.X450_splice 0.28 TCGA-AA-A01R-01 11 7021577 7021577 T C ZNF214 Missense_Mutation p.D446G 0.36 tolerated(0.31) benign(0.096) TCGA-AA-A01R-01 11 70333178 70333178 C T SHANK2 Missense_Mutation p.V1075I 0.39 tolerated(0.21) benign(0.042) TCGA-AA-A01R-01 11 7067910 7067910 G A NLRP14 Missense_Mutation p.R657H 0.25 tolerated(0.8) benign(0.001) TCGA-AA-A01R-01 11 71249694 71249694 C A KRTAP5-8 3'UTR 0.30 TCGA-AA-A01R-01 11 71849923 71849923 T C FOLR3 Silent p.D71D 0.37 TCGA-AA-A01R-01 11 72326125 72326125 C T PDE2A Intron 0.29 TCGA-AA-A01R-01 11 72414102 72414102 G A ARAP1 Missense_Mutation p.T672I 0.21 deleterious(0.03) probably_damaging(0.917) TCGA-AA-A01R-01 11 72421468 72421468 C T ARAP1 Missense_Mutation p.V460M 0.32 deleterious(0) possibly_damaging(0.832) TCGA-AA-A01R-01 11 72422184 72422184 G A ARAP1 Silent p.D365D 0.30 TCGA-AA-A01R-01 11 72492206 72492206 A G STARD10 Silent p.S7S 0.32 TCGA-AA-A01R-01 11 72539930 72539930 C T ATG16L2 Missense_Mutation p.P558L 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 11 72945647 72945647 G A P2RY2 Missense_Mutation p.R148H 0.53 tolerated(0.2) benign(0.022) TCGA-AA-A01R-01 11 72945734 72945734 G A P2RY2 Missense_Mutation p.R177H 0.32 deleterious(0.03) benign(0.035) TCGA-AA-A01R-01 11 73073210 73073210 G T ARHGEF17 Missense_Mutation p.E1540D 0.29 tolerated(0.12) benign(0.293) TCGA-AA-A01R-01 11 73388998 73388998 A G RAB6A Missense_Mutation p.I191T 0.26 deleterious(0.03) possibly_damaging(0.462) TCGA-AA-A01R-01 11 73915489 73915489 C T PPME1 Missense_Mutation p.T96M 0.32 deleterious(0) probably_damaging(0.946) TCGA-AA-A01R-01 11 73957184 73957184 G A PPME1 Missense_Mutation p.G300S 0.44 deleterious(0.02) probably_damaging(0.972) TCGA-AA-A01R-01 11 74985178 74985178 C T ARRB1 Missense_Mutation p.R285Q 0.36 tolerated(0.11) possibly_damaging(0.741) TCGA-AA-A01R-01 11 76063538 76063538 C T PRKRIR Missense_Mutation p.R219Q 0.26 tolerated(0.13) benign(0.042) TCGA-AA-A01R-01 11 76508322 76508322 G A TSKU 3'UTR 0.26 TCGA-AA-A01R-01 11 76833670 76833670 C T CAPN5 Missense_Mutation p.S551L 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A01R-01 11 7718080 7718081 - A OVCH2 Frame_Shift_Ins p.S358Ffs*6 0.22 TCGA-AA-A01R-01 11 78380594 78380594 C T TENM4 Missense_Mutation p.G2266S 0.29 tolerated(0.57) benign(0.001) TCGA-AA-A01R-01 11 8122092 8122092 G A TUB Missense_Mutation p.V442M 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 11 82874870 82874870 G A PCF11 Silent p.T156T 0.31 TCGA-AA-A01R-01 11 86520704 86520704 G A PRSS23 3'UTR 0.30 TCGA-AA-A01R-01 11 89106611 89106611 C T NOX4 Missense_Mutation p.G375E 0.13 deleterious(0) probably_damaging(0.948) TCGA-AA-A01R-01 11 89185011 89185011 C A NOX4 Missense_Mutation p.S69I 0.32 deleterious(0.01) possibly_damaging(0.776) TCGA-AA-A01R-01 11 89447408 89447408 G A TRIM77 Missense_Mutation p.V186M 0.28 tolerated(0.36) possibly_damaging(0.539) TCGA-AA-A01R-01 11 89537224 89537224 T A TRIM49 Intron 0.19 TCGA-AA-A01R-01 11 92714975 92714975 G A MTNR1B Missense_Mutation p.A196T 0.26 tolerated(0.54) benign(0.052) TCGA-AA-A01R-01 11 93432377 93432377 A G KIAA1731 Silent p.S1433S 0.33 TCGA-AA-A01R-01 11 9431628 9431628 T A IPO7 Missense_Mutation p.N158K 0.31 tolerated(0.48) benign(0.097) TCGA-AA-A01R-01 11 96092181 96092181 T C CCDC82 Silent p.S514S 0.29 TCGA-AA-A01R-01 12 101005838 101005838 C T GAS2L3 Missense_Mutation p.R122W 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 12 102025861 102025861 C T MYBPC1 Silent p.C142C 0.28 TCGA-AA-A01R-01 12 10313003 10313003 C T OLR1 Missense_Mutation p.R208Q 0.28 tolerated(0.16) benign(0.194) TCGA-AA-A01R-01 12 106480538 106480538 C T NUAK1 Missense_Mutation p.V163I 0.28 deleterious(0.04) benign(0.096) TCGA-AA-A01R-01 12 106633423 106633423 C T CKAP4 Silent p.S396S 0.38 TCGA-AA-A01R-01 12 10772921 10772921 C T STYK1 Missense_Mutation p.R364H 0.35 tolerated(0.28) benign(0.009) TCGA-AA-A01R-01 12 109604704 109604704 G A ACACB Missense_Mutation p.R231Q 0.20 tolerated(0.08) possibly_damaging(0.716) TCGA-AA-A01R-01 12 109692038 109692038 C A ACACB Missense_Mutation p.P2022H 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 12 109693957 109693957 C T ACACB Missense_Mutation p.T2060M 0.34 tolerated(0.09) benign(0.176) TCGA-AA-A01R-01 12 109698294 109698294 A G ACACB Missense_Mutation p.D2169G 0.33 deleterious(0) possibly_damaging(0.816) TCGA-AA-A01R-01 12 111089113 111089113 G A HVCN1 Silent p.L184L 0.36 TCGA-AA-A01R-01 12 111729243 111729243 C T CUX2 Missense_Mutation p.A108V 0.32 tolerated(0.39) benign(0.002) TCGA-AA-A01R-01 12 111748139 111748139 C T CUX2 Missense_Mutation p.T518I 0.35 tolerated(0.2) benign(0.002) TCGA-AA-A01R-01 12 112610509 112610509 C T HECTD4 Silent p.A3771A 0.37 TCGA-AA-A01R-01 12 113835055 113835055 C T SDS Missense_Mutation p.V190I 0.36 tolerated(1) benign(0.017) TCGA-AA-A01R-01 12 113865908 113865908 G A SDSL Missense_Mutation p.V41M 0.35 tolerated(0.15) benign(0.034) TCGA-AA-A01R-01 12 117615422 117615422 G A FBXO21 Silent p.Y165Y 0.26 TCGA-AA-A01R-01 12 117996345 117996345 G A KSR2 Silent p.A453A 0.30 TCGA-AA-A01R-01 12 118199015 118199015 G A KSR2 Missense_Mutation p.R263C 0.25 deleterious(0.01) possibly_damaging(0.854) TCGA-AA-A01R-01 12 118506296 118506296 G A VSIG10 Missense_Mutation p.R485C 0.35 deleterious_low_confidence(0.04) benign(0.247) TCGA-AA-A01R-01 12 119563215 119563215 G A SRRM4 Missense_Mutation p.R182H 0.30 tolerated_low_confidence(0.08) unknown(0) TCGA-AA-A01R-01 12 121176985 121176985 G A ACADS Missense_Mutation p.A358T 0.33 tolerated(0.47) benign(0.003) TCGA-AA-A01R-01 12 122107452 122107452 G A MORN3 5'UTR 0.21 TCGA-AA-A01R-01 12 122252160 122252160 C T SETD1B Missense_Mutation p.P680L 0.25 unknown(0) TCGA-AA-A01R-01 12 122257644 122257644 C T SETD1B Silent p.D1208D 0.23 TCGA-AA-A01R-01 12 122468668 122468668 C T BCL7A Missense_Mutation p.T52M 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-AA-A01R-01 12 122658468 122658468 G A IL31 Missense_Mutation p.R30C 0.39 tolerated(0.19) benign(0.157) TCGA-AA-A01R-01 12 122676006 122676006 G A LRRC43 Silent p.P327P 0.32 TCGA-AA-A01R-01 12 122735536 122735536 G A VPS33A Silent p.C198C 0.28 TCGA-AA-A01R-01 12 12302006 12302006 G A LRP6 Missense_Mutation p.R1026C 0.39 deleterious(0) probably_damaging(0.981) TCGA-AA-A01R-01 12 123341638 123341638 G A HIP1R Missense_Mutation p.R564Q 0.42 tolerated(0.31) benign(0.006) TCGA-AA-A01R-01 12 123419945 123419945 C T ABCB9 Missense_Mutation p.A593T 0.48 deleterious(0) probably_damaging(0.978) TCGA-AA-A01R-01 12 123687267 123687267 G A MPHOSPH9 Missense_Mutation p.S410L 0.28 tolerated(0.06) benign(0.066) TCGA-AA-A01R-01 12 123738488 123738488 A G C12orf65 Silent p.S89S 0.38 TCGA-AA-A01R-01 12 123889471 123889471 C T SETD8 Missense_Mutation p.T233I 0.39 deleterious(0.03) possibly_damaging(0.906) TCGA-AA-A01R-01 12 125460012 125460012 G A DHX37 Silent p.A311A 0.29 TCGA-AA-A01R-01 12 129278781 129278781 C T SLC15A4 Missense_Mutation p.R565Q 0.29 tolerated(0.15) benign(0.002) TCGA-AA-A01R-01 12 130185052 130185052 G A TMEM132D Missense_Mutation p.P91S 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 12 13061271 13061271 G A GPRC5A Missense_Mutation p.V30I 0.29 tolerated(0.14) benign(0.038) TCGA-AA-A01R-01 12 130647762 130647762 C T FZD10 Missense_Mutation p.A92V 0.33 tolerated(0.69) probably_damaging(0.996) TCGA-AA-A01R-01 12 131291562 131291562 C T STX2 Missense_Mutation p.R143Q 0.29 deleterious(0) benign(0.075) TCGA-AA-A01R-01 12 132204075 132204075 C T SFSWAP Silent p.D199D 0.32 TCGA-AA-A01R-01 12 132325199 132325199 C T MMP17 Silent p.S168S 0.29 TCGA-AA-A01R-01 12 132428202 132428202 G A PUS1 3'UTR 0.32 TCGA-AA-A01R-01 12 132445192 132445192 G A EP400 Missense_Mutation p.V10I 0.35 unknown(0) TCGA-AA-A01R-01 12 133158852 133158852 G A FBRSL1 Missense_Mutation p.R777Q 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A01R-01 12 14576917 14576917 G A ATF7IP Missense_Mutation p.R23H 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-A01R-01 12 1702472 1702472 C T FBXL14 Missense_Mutation p.S254N 0.35 tolerated(0.26) benign(0.057) TCGA-AA-A01R-01 12 18237463 18237463 C T RERGL Missense_Mutation p.S108N 0.20 tolerated(0.19) benign(0.02) TCGA-AA-A01R-01 12 21196481 21196481 G A SLCO1B7 Missense_Mutation p.R267Q 0.28 tolerated(1) benign(0) TCGA-AA-A01R-01 12 21201706 21201706 A G SLCO1B7 Missense_Mutation p.K352R 0.33 tolerated(0.1) benign(0.315) TCGA-AA-A01R-01 12 21377670 21377670 C T SLCO1B1 Missense_Mutation p.P588S 0.25 deleterious(0.02) probably_damaging(0.922) TCGA-AA-A01R-01 12 21919124 21919124 C T KCNJ8 Missense_Mutation p.V270M 0.39 deleterious(0.03) benign(0.296) TCGA-AA-A01R-01 12 22778368 22778368 G A ETNK1 Missense_Mutation p.A91T 0.26 tolerated_low_confidence(0.07) possibly_damaging(0.811) TCGA-AA-A01R-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.26 deleterious(0.04) possibly_damaging(0.506) TCGA-AA-A01R-01 12 27235211 27235211 C T C12orf71 Missense_Mutation p.R69H 0.30 tolerated(0.4) possibly_damaging(0.459) TCGA-AA-A01R-01 12 29669387 29669387 T - TMTC1 Frame_Shift_Del p.E735Kfs*5 0.20 TCGA-AA-A01R-01 12 331746 331746 C A SLC6A13 Missense_Mutation p.W489C 0.35 tolerated(0.32) possibly_damaging(0.895) TCGA-AA-A01R-01 12 3749682 3749682 T G EFCAB4B Intron 0.33 TCGA-AA-A01R-01 12 46592460 46592460 C A SLC38A1 Missense_Mutation p.R357L 0.32 deleterious(0) possibly_damaging(0.477) TCGA-AA-A01R-01 12 4736173 4736173 G A AKAP3 Missense_Mutation p.P632L 0.57 deleterious(0.01) possibly_damaging(0.883) TCGA-AA-A01R-01 12 48131373 48131373 G T RAPGEF3 Missense_Mutation p.L917I 0.48 deleterious(0.02) probably_damaging(0.967) TCGA-AA-A01R-01 12 48192638 48192638 C T HDAC7 Missense_Mutation p.R63H 0.38 tolerated(1) benign(0.001) TCGA-AA-A01R-01 12 48539576 48539577 - T PFKM 3'UTR 0.29 TCGA-AA-A01R-01 12 49061475 49061475 C T KANSL2 Splice_Site p.X325_splice 0.32 TCGA-AA-A01R-01 12 49220151 49220151 G A CACNB3 Silent p.A248A 0.41 TCGA-AA-A01R-01 12 49230359 49230359 C T DDX23 Missense_Mutation p.G410D 0.03 deleterious(0.01) probably_damaging(0.986) TCGA-AA-A01R-01 12 4923563 4923563 C T KCNA6 3'UTR 0.36 TCGA-AA-A01R-01 12 49360145 49360145 G T WNT10B Silent p.P301P 0.32 TCGA-AA-A01R-01 12 49360216 49360216 G A WNT10B Missense_Mutation p.R278W 0.26 deleterious(0) probably_damaging(0.913) TCGA-AA-A01R-01 12 49427267 49427267 G A KMT2D Nonsense_Mutation p.Q3741* 0.30 TCGA-AA-A01R-01 12 49434914 49434914 G A KMT2D Silent p.G2213G 0.25 TCGA-AA-A01R-01 12 49447880 49447880 C T KMT2D Missense_Mutation p.R185H 0.33 unknown(0) TCGA-AA-A01R-01 12 50232624 50232624 T C BCDIN3D Missense_Mutation p.M137V 0.33 tolerated(0.09) benign(0.003) TCGA-AA-A01R-01 12 50284471 50284471 C T FAIM2 Missense_Mutation p.V174I 0.28 tolerated(1) benign(0.003) TCGA-AA-A01R-01 12 50400233 50400233 G T RACGAP1 Missense_Mutation p.A91D 0.07 deleterious(0.01) possibly_damaging(0.721) TCGA-AA-A01R-01 12 51754523 51754523 G A GALNT6 Silent p.N383N 0.39 TCGA-AA-A01R-01 12 52377920 52377920 C T ACVR1B Missense_Mutation p.H358Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 12 52758769 52758769 C A KRT85 Missense_Mutation p.E202D 0.13 tolerated(0.84) probably_damaging(0.992) TCGA-AA-A01R-01 12 52758820 52758820 G A KRT85 Silent p.C185C 0.36 TCGA-AA-A01R-01 12 52758836 52758836 C T KRT85 Missense_Mutation p.R180Q 0.30 tolerated(0.05) benign(0.195) TCGA-AA-A01R-01 12 52799668 52799668 C T KRT82 Missense_Mutation p.A132T 0.36 deleterious(0) possibly_damaging(0.662) TCGA-AA-A01R-01 12 52941728 52941728 G A KRT71 Silent p.D339D 0.36 TCGA-AA-A01R-01 12 53216903 53216903 G T KRT79 Missense_Mutation p.L422M 0.29 tolerated(0.5) probably_damaging(1) TCGA-AA-A01R-01 12 53238383 53238383 C T KRT78 Missense_Mutation p.R294Q 0.41 tolerated(1) benign(0.041) TCGA-AA-A01R-01 12 53898576 53898576 G A TARBP2 Missense_Mutation p.R197Q 0.28 deleterious(0.02) benign(0.097) TCGA-AA-A01R-01 12 54447940 54447940 G A HOXC4 Silent p.S78S 0.27 TCGA-AA-A01R-01 12 54686486 54686486 G A NFE2 Missense_Mutation p.A265V 0.35 deleterious(0.04) possibly_damaging(0.639) TCGA-AA-A01R-01 12 55422864 55422864 T C NEUROD4 3'UTR 0.34 TCGA-AA-A01R-01 12 56233331 56233331 G A MMP19 Missense_Mutation p.P239S 0.31 tolerated(0.18) probably_damaging(0.948) TCGA-AA-A01R-01 12 56636904 56636904 G A ANKRD52 3'UTR 0.35 TCGA-AA-A01R-01 12 56999644 56999644 C T BAZ2A Silent p.P823P 0.32 TCGA-AA-A01R-01 12 57486732 57486732 T C NAB2 Missense_Mutation p.L375P 0.33 tolerated(0.35) benign(0.008) TCGA-AA-A01R-01 12 57861208 57861208 C T GLI1 Silent p.H335H 0.31 TCGA-AA-A01R-01 12 57919851 57919851 G A MBD6 Missense_Mutation p.R367H 0.30 deleterious_low_confidence(0) unknown(0) TCGA-AA-A01R-01 12 57966449 57966449 C T KIF5A Silent p.N552N 0.34 TCGA-AA-A01R-01 12 58114605 58114605 G A OS9 Silent p.R639R 0.37 TCGA-AA-A01R-01 12 58174255 58174255 G A METTL21B Silent p.L169L 0.30 TCGA-AA-A01R-01 12 63042384 63042384 C T PPM1H Missense_Mutation p.R477H 0.27 tolerated(0.28) probably_damaging(0.975) TCGA-AA-A01R-01 12 6346971 6346971 C T CD9 Missense_Mutation p.R222C 0.34 deleterious(0) probably_damaging(0.972) TCGA-AA-A01R-01 12 64521457 64521457 G T SRGAP1 Missense_Mutation p.K831N 0.32 tolerated(0.06) benign(0.142) TCGA-AA-A01R-01 12 64873877 64873877 A G TBK1 Missense_Mutation p.M263V 0.34 deleterious(0) benign(0.438) TCGA-AA-A01R-01 12 6730052 6730052 G A LPAR5 Silent p.A121A 0.39 TCGA-AA-A01R-01 12 68051740 68051740 C T DYRK2 Silent p.P351P 0.30 TCGA-AA-A01R-01 12 70133607 70133607 G A RAB3IP 5'UTR 0.29 TCGA-AA-A01R-01 12 7076552 7076552 C A PHB2 Intron 0.54 TCGA-AA-A01R-01 12 70794041 70794041 T G KCNMB4 Missense_Mutation p.V130G 0.26 tolerated(0.08) probably_damaging(0.997) TCGA-AA-A01R-01 12 7171652 7171653 - C C1S Frame_Shift_Ins p.E161Gfs*6 0.25 TCGA-AA-A01R-01 12 7249644 7249644 G A C1RL Silent p.G269G 0.38 TCGA-AA-A01R-01 12 7295807 7295807 G A CLSTN3 Missense_Mutation p.V583M 0.29 deleterious(0.02) benign(0.147) TCGA-AA-A01R-01 12 7351701 7351701 C T PEX5 Silent p.T196T 0.31 TCGA-AA-A01R-01 12 75601404 75601404 G A KCNC2 Silent p.T120T 0.40 TCGA-AA-A01R-01 12 76786437 76786437 C T OSBPL8 Missense_Mutation p.V285I 0.30 tolerated(0.41) benign(0) TCGA-AA-A01R-01 12 78444658 78444658 G A NAV3 Silent p.P749P 0.39 TCGA-AA-A01R-01 12 78515850 78515850 G A NAV3 Missense_Mutation p.G1294S 0.37 tolerated(0.53) probably_damaging(1) TCGA-AA-A01R-01 12 80936582 80936582 A T PTPRQ Silent p.P1261P 0.28 TCGA-AA-A01R-01 12 82147852 82147852 C T PPFIA2 Missense_Mutation p.R50Q 0.33 tolerated(0.11) possibly_damaging(0.66) TCGA-AA-A01R-01 12 85279713 85279713 C T SLC6A15 Missense_Mutation p.G142R 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 12 85279754 85279754 C T SLC6A15 Missense_Mutation p.G128D 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 12 90013984 90013984 C T ATP2B1 Missense_Mutation p.V541I 0.34 tolerated(0.12) probably_damaging(0.994) TCGA-AA-A01R-01 12 9021194 9021194 T C A2ML1 Missense_Mutation p.F1375L 0.26 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 12 91497970 91497970 C T LUM Missense_Mutation p.R330H 0.41 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 12 93100581 93100581 C T C12orf74 Silent p.G58G 0.43 TCGA-AA-A01R-01 12 96077487 96077487 G A NTN4 Missense_Mutation p.P394L 0.27 tolerated(0.23) benign(0.003) TCGA-AA-A01R-01 12 96617349 96617349 A T ELK3 Missense_Mutation p.E2V 0.25 deleterious(0) probably_damaging(0.972) TCGA-AA-A01R-01 12 968524 968524 G A WNK1 Missense_Mutation p.R505H 0.33 deleterious(0.01) unknown(0) TCGA-AA-A01R-01 12 970362 970362 G T WNK1 Nonsense_Mutation p.G602* 0.27 TCGA-AA-A01R-01 12 97345929 97345929 A G NEDD1 3'UTR 0.56 TCGA-AA-A01R-01 13 100172322 100172322 G A TM9SF2 Missense_Mutation p.R91H 0.27 tolerated(0.22) probably_damaging(0.951) TCGA-AA-A01R-01 13 100518550 100518550 G A CLYBL Missense_Mutation p.V231I 0.29 tolerated(0.06) benign(0.049) TCGA-AA-A01R-01 13 101735217 101735217 C T NALCN Silent p.P1236P 0.36 TCGA-AA-A01R-01 13 102568810 102568810 C T FGF14 Intron 0.31 TCGA-AA-A01R-01 13 103385397 103385397 G C CCDC168 Missense_Mutation p.P1255A 0.33 deleterious(0.02) unknown(0) TCGA-AA-A01R-01 13 103386300 103386300 G T CCDC168 Missense_Mutation p.P954T 0.33 deleterious(0.02) possibly_damaging(0.803) TCGA-AA-A01R-01 13 103459804 103459804 C T BIVM-ERCC5 Missense_Mutation p.R35W 0.37 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-AA-A01R-01 13 106124954 106124954 C T DAOA Silent p.D67D 0.30 TCGA-AA-A01R-01 13 110818589 110818589 C T COL4A1 Silent p.P1337P 0.33 TCGA-AA-A01R-01 13 111290668 111290668 G A CARKD Missense_Mutation p.G325S 0.45 tolerated_low_confidence(0.16) benign(0.042) TCGA-AA-A01R-01 13 113439518 113439518 G A ATP11A Missense_Mutation p.A37T 0.28 tolerated(0.99) benign(0) TCGA-AA-A01R-01 13 113731467 113731467 C T MCF2L Silent p.P534P 0.31 TCGA-AA-A01R-01 13 113735527 113735527 G A MCF2L Silent p.R603R 0.31 TCGA-AA-A01R-01 13 114504662 114504662 C T TMEM255B Silent p.G182G 0.30 TCGA-AA-A01R-01 13 20279843 20279843 C T PSPC1 Missense_Mutation p.A449T 0.20 tolerated(0.21) benign(0.001) TCGA-AA-A01R-01 13 21961744 21961744 C T ZDHHC20 Missense_Mutation p.G253R 0.36 deleterious(0.02) probably_damaging(1) TCGA-AA-A01R-01 13 24242862 24242862 A G TNFRSF19 Missense_Mutation p.T291A 0.30 tolerated_low_confidence(0.9) benign(0.004) TCGA-AA-A01R-01 13 27847385 27847385 C T RASL11A Silent p.D161D 0.32 TCGA-AA-A01R-01 13 28127556 28127556 T C LNX2 Missense_Mutation p.N523D 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-AA-A01R-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.04 TCGA-AA-A01R-01 13 32747532 32747532 T A FRY Missense_Mutation p.I727N 0.30 tolerated(0.29) benign(0.004) TCGA-AA-A01R-01 13 33704196 33704196 G A STARD13 Silent p.S206S 0.32 TCGA-AA-A01R-01 13 36776096 36776096 A G SOHLH2 Silent p.D138D 0.33 TCGA-AA-A01R-01 13 36900694 36900694 T G SPG20 Intron 0.30 TCGA-AA-A01R-01 13 37427645 37427645 C T SMAD9 Missense_Mutation p.A391T 0.39 deleterious(0.02) possibly_damaging(0.629) TCGA-AA-A01R-01 13 37679640 37679640 G A CSNK1A1L 5'UTR 0.26 TCGA-AA-A01R-01 13 38154761 38154761 C T POSTN Missense_Mutation p.R489H 0.30 tolerated(0.13) possibly_damaging(0.896) TCGA-AA-A01R-01 13 38158993 38158993 G A POSTN Missense_Mutation p.T323M 0.34 deleterious(0) probably_damaging(0.992) TCGA-AA-A01R-01 13 41381542 41381542 G T SLC25A15 Missense_Mutation p.G189C 0.24 deleterious(0.01) possibly_damaging(0.639) TCGA-AA-A01R-01 13 41507962 41507962 G A ELF1 Nonsense_Mutation p.Q487* 0.30 TCGA-AA-A01R-01 13 46288280 46288280 C T SPERT Missense_Mutation p.R374W 0.44 deleterious(0.04) benign(0.006) TCGA-AA-A01R-01 13 46559530 46559530 G A ZC3H13 Missense_Mutation p.T541M 0.32 probably_damaging(0.995) TCGA-AA-A01R-01 13 51825615 51825615 G A FAM124A Missense_Mutation p.V74I 0.34 tolerated(0.06) benign(0.169) TCGA-AA-A01R-01 13 52604737 52604737 T G UTP14C Silent p.A599A 0.27 TCGA-AA-A01R-01 13 53422446 53422446 G - PCDH8 Frame_Shift_Del p.G43Afs*13 0.23 TCGA-AA-A01R-01 13 58207331 58207331 C T PCDH17 Silent p.D217D 0.32 TCGA-AA-A01R-01 13 58209099 58209099 A T PCDH17 Missense_Mutation p.S807C 0.16 deleterious(0.03) possibly_damaging(0.848) TCGA-AA-A01R-01 13 58209100 58209100 G A PCDH17 Missense_Mutation p.S807N 0.17 tolerated(0.59) benign(0.277) TCGA-AA-A01R-01 13 73320709 73320709 G A BORA Silent p.P314P 0.41 TCGA-AA-A01R-01 13 76397791 76397791 G A LMO7 Missense_Mutation p.A678T 0.28 tolerated(0.67) benign(0.002) TCGA-AA-A01R-01 13 76423370 76423370 C T LMO7 Nonsense_Mutation p.R1203* 0.26 TCGA-AA-A01R-01 13 77581908 77581908 G T FBXL3 Missense_Mutation p.A220D 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-AA-A01R-01 13 77792087 77792087 C T MYCBP2 Missense_Mutation p.C944Y 0.41 benign(0.377) TCGA-AA-A01R-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.22 TCGA-AA-A01R-01 13 86370451 86370451 G A SLITRK6 Nonsense_Mutation p.R65* 0.32 TCGA-AA-A01R-01 13 95279295 95279295 A G GPR180 Missense_Mutation p.Q398R 0.30 tolerated(0.1) probably_damaging(0.954) TCGA-AA-A01R-01 13 95861752 95861752 T C ABCC4 Missense_Mutation p.M241V 0.28 tolerated(0.56) benign(0.006) TCGA-AA-A01R-01 13 97999177 97999177 T A MBNL2 Missense_Mutation p.D220E 0.29 deleterious(0) probably_damaging(0.973) TCGA-AA-A01R-01 13 98009823 98009823 G A MBNL2 Missense_Mutation p.V298I 0.28 tolerated(0.25) benign(0.008) TCGA-AA-A01R-01 13 99047627 99047627 C T FARP1 Silent p.N437N 0.46 TCGA-AA-A01R-01 14 100363543 100363543 G A EML1 Missense_Mutation p.V266I 0.29 deleterious(0.04) possibly_damaging(0.53) TCGA-AA-A01R-01 14 101004947 101004947 G A BEGAIN Missense_Mutation p.R381C 0.36 deleterious(0) probably_damaging(0.959) TCGA-AA-A01R-01 14 102463572 102463572 C T DYNC1H1 Silent p.T1255T 0.33 TCGA-AA-A01R-01 14 102478789 102478789 C T DYNC1H1 Silent p.R2332R 0.35 TCGA-AA-A01R-01 14 102508438 102508438 C T DYNC1H1 Missense_Mutation p.T4064M 0.36 benign(0.042) TCGA-AA-A01R-01 14 102516871 102516871 C T DYNC1H1 Missense_Mutation p.R4638W 0.34 probably_damaging(0.978) TCGA-AA-A01R-01 14 102675299 102675299 C T WDR20 Silent p.G295G 0.13 TCGA-AA-A01R-01 14 102805557 102805557 G A ZNF839 Missense_Mutation p.A642T 0.33 tolerated(0.59) benign(0.168) TCGA-AA-A01R-01 14 103352553 103352553 G A TRAF3 Missense_Mutation p.V200M 0.27 tolerated(0.19) probably_damaging(0.922) TCGA-AA-A01R-01 14 104165107 104165107 G A XRCC3 3'UTR 0.13 TCGA-AA-A01R-01 14 104640609 104640609 G A KIF26A Missense_Mutation p.A719T 0.33 deleterious(0) probably_damaging(0.994) TCGA-AA-A01R-01 14 105174182 105174182 C T INF2 Silent p.C526C 0.38 TCGA-AA-A01R-01 14 105179646 105179646 G T INF2 Missense_Mutation p.V960F 0.31 tolerated(0.08) unknown(0) TCGA-AA-A01R-01 14 105609126 105609126 G A JAG2 Missense_Mutation p.S1208L 0.27 deleterious(0.01) benign(0.002) TCGA-AA-A01R-01 14 105639376 105639376 G - NUDT14 Frame_Shift_Del p.N218Tfs*11 0.23 TCGA-AA-A01R-01 14 105927197 105927197 C T MTA1 Silent p.D283D 0.29 TCGA-AA-A01R-01 14 105931487 105931487 C T MTA1 Missense_Mutation p.R531C 0.54 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 14 106815945 106815945 G A IGHV3-33 Missense_Mutation p.A43V 0.21 deleterious_low_confidence(0.02) benign(0.361) TCGA-AA-A01R-01 14 19988215 19988215 G A POTEM 3'UTR 0.28 TCGA-AA-A01R-01 14 20444015 20444015 G A OR4K15 Missense_Mutation p.R113H 0.09 tolerated(1) benign(0) TCGA-AA-A01R-01 14 21830443 21830443 C T SUPT16H Missense_Mutation p.R569Q 0.35 deleterious(0) probably_damaging(0.987) TCGA-AA-A01R-01 14 23523478 23523478 G T CDH24 Silent p.R282R 0.28 TCGA-AA-A01R-01 14 23530359 23530359 C A ACIN1 Silent p.L1211L 0.32 TCGA-AA-A01R-01 14 23851679 23851679 C A MYH6 Missense_Mutation p.Q1918H 0.32 deleterious(0) probably_damaging(0.987) TCGA-AA-A01R-01 14 23945564 23945564 C T NGDN Missense_Mutation p.R221C 0.29 deleterious(0.03) benign(0.035) TCGA-AA-A01R-01 14 24026298 24026298 G A THTPA Missense_Mutation p.G111D 0.28 tolerated(0.18) benign(0.001) TCGA-AA-A01R-01 14 24523641 24523641 C T LRRC16B Nonsense_Mutation p.R95* 0.35 TCGA-AA-A01R-01 14 24658626 24658626 C T TM9SF1 Missense_Mutation p.D606N 0.33 deleterious(0) probably_damaging(0.986) TCGA-AA-A01R-01 14 24706532 24706532 A G GMPR2 Missense_Mutation p.H228R 0.12 tolerated(0.1) probably_damaging(0.993) TCGA-AA-A01R-01 14 24728975 24728975 G A TGM1 Missense_Mutation p.R307W 0.24 deleterious(0) probably_damaging(0.977) TCGA-AA-A01R-01 14 24780361 24780361 G T LTB4R2 Missense_Mutation p.R164M 0.34 tolerated(0.09) benign(0.382) TCGA-AA-A01R-01 14 24900095 24900095 G A KHNYN Nonsense_Mutation p.W53* 0.26 TCGA-AA-A01R-01 14 25043500 25043500 C T CTSG Missense_Mutation p.R182Q 0.62 tolerated(0.43) benign(0.005) TCGA-AA-A01R-01 14 29237275 29237275 G A FOXG1 Missense_Mutation p.V264M 0.44 tolerated(0.17) probably_damaging(0.992) TCGA-AA-A01R-01 14 29261506 29261506 C T C14orf23 3'UTR 0.64 TCGA-AA-A01R-01 14 32562545 32562545 T - ARHGAP5 Frame_Shift_Del p.F892Lfs*9 0.21 TCGA-AA-A01R-01 14 36988522 36988522 G A NKX2-1 Missense_Mutation p.S44F 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 14 37641552 37641552 A T SLC25A21 Missense_Mutation p.S2T 0.24 tolerated_low_confidence(0.52) benign(0.001) TCGA-AA-A01R-01 14 47120920 47120920 C T RPL10L Missense_Mutation p.R7H 0.25 deleterious(0.03) benign(0.038) TCGA-AA-A01R-01 14 51710663 51710663 C T TMX1 Missense_Mutation p.A81V 0.27 deleterious(0) possibly_damaging(0.642) TCGA-AA-A01R-01 14 52535684 52535684 G A NID2 Missense_Mutation p.P10L 0.30 tolerated_low_confidence(0.31) benign(0.006) TCGA-AA-A01R-01 14 54898881 54898881 C T CNIH1 Missense_Mutation p.A70T 0.35 tolerated(0.14) benign(0.034) TCGA-AA-A01R-01 14 55243162 55243162 A G SAMD4A Missense_Mutation p.N650D 0.33 tolerated(0.1) probably_damaging(0.967) TCGA-AA-A01R-01 14 55429791 55429791 G A WDHD1 Missense_Mutation p.R804W 0.35 deleterious(0) probably_damaging(0.949) TCGA-AA-A01R-01 14 55880993 55880993 G A TBPL2 3'UTR 0.32 TCGA-AA-A01R-01 14 56128268 56128268 G A KTN1 Missense_Mutation p.G1010S 0.32 tolerated(1) benign(0.001) TCGA-AA-A01R-01 14 58056152 58056152 G T SLC35F4 Silent p.S159S 0.18 TCGA-AA-A01R-01 14 58831166 58831166 G A ARID4A Missense_Mutation p.E787K 0.35 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AA-A01R-01 14 59114451 59114451 A G DACT1 3'Flank 0.26 TCGA-AA-A01R-01 14 61186499 61186499 C T SIX4 Missense_Mutation p.V510M 0.32 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-AA-A01R-01 14 62547885 62547885 A T SYT16 Missense_Mutation p.M443L 0.31 deleterious(0.03) benign(0.062) TCGA-AA-A01R-01 14 63316475 63316475 G A KCNH5 Missense_Mutation p.R489W 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 14 64692269 64692269 C T SYNE2 3'UTR 0.29 TCGA-AA-A01R-01 14 64908814 64908814 G A MTHFD1 Missense_Mutation p.A643T 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A01R-01 14 64989161 64989161 C T ZBTB1 Silent p.S313S 0.40 TCGA-AA-A01R-01 14 65543379 65543379 G A MAX Missense_Mutation p.R100C 0.28 deleterious(0.05) benign(0.143) TCGA-AA-A01R-01 14 67346679 67346679 G A GPHN Missense_Mutation p.R106Q 0.29 deleterious(0.01) possibly_damaging(0.702) TCGA-AA-A01R-01 14 67850263 67850263 T - EIF2S1 3'UTR 0.36 TCGA-AA-A01R-01 14 68086632 68086632 C T ARG2 5'UTR 0.23 TCGA-AA-A01R-01 14 68086765 68086765 A C ARG2 Missense_Mutation p.H24P 0.27 deleterious(0.03) benign(0.057) TCGA-AA-A01R-01 14 69346681 69346681 G A ACTN1 Missense_Mutation p.R760W 0.31 deleterious(0) probably_damaging(0.948) TCGA-AA-A01R-01 14 69994568 69994568 G A PLEKHD1 Missense_Mutation p.V424M 0.31 deleterious(0) benign(0.149) TCGA-AA-A01R-01 14 70512793 70512793 C T SLC8A3 Silent p.P885P 0.22 TCGA-AA-A01R-01 14 72139291 72139291 C T SIPA1L1 Missense_Mutation p.T1019M 0.28 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 14 72961956 72961956 G T RGS6 Missense_Mutation p.W317C 0.32 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 14 73404707 73404707 G T DCAF4 Missense_Mutation p.Q7H 0.18 deleterious(0.01) possibly_damaging(0.781) TCGA-AA-A01R-01 14 73538444 73538444 C A RBM25 Missense_Mutation p.P32H 0.28 probably_damaging(0.924) TCGA-AA-A01R-01 14 73989219 73989219 C T HEATR4 Missense_Mutation p.R213H 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 14 74179998 74179998 G A PNMA1 Silent p.T115T 0.33 TCGA-AA-A01R-01 14 74824804 74824804 C T VRTN Missense_Mutation p.R440W 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 14 77493450 77493450 C T IRF2BPL Missense_Mutation p.R229H 0.32 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-AA-A01R-01 14 77718233 77718233 G A TMEM63C Missense_Mutation p.D714N 0.27 tolerated(1) benign(0.006) TCGA-AA-A01R-01 14 77791217 77791217 T A GSTZ1 Missense_Mutation p.I7N 0.42 deleterious(0) probably_damaging(0.926) TCGA-AA-A01R-01 14 88477203 88477203 A C GPR65 Silent p.T4T 0.33 TCGA-AA-A01R-01 14 88945780 88945780 C T PTPN21 Silent p.A665A 0.48 TCGA-AA-A01R-01 14 89069348 89069348 A C ZC3H14 Missense_Mutation p.Q564P 0.36 tolerated(0.22) probably_damaging(0.997) TCGA-AA-A01R-01 14 91338358 91338358 C T RPS6KA5 3'UTR 0.31 TCGA-AA-A01R-01 14 91766287 91766287 G A CCDC88C Missense_Mutation p.R1255W 0.36 deleterious(0.03) benign(0.028) TCGA-AA-A01R-01 14 91779510 91779510 C T CCDC88C Missense_Mutation p.G884S 0.29 tolerated(0.88) benign(0.002) TCGA-AA-A01R-01 14 91809955 91809955 G A CCDC88C Silent p.G129G 0.30 TCGA-AA-A01R-01 14 93408110 93408110 G A ITPK1 Silent p.G347G 0.29 TCGA-AA-A01R-01 14 93653246 93653246 A G TMEM251 3'UTR 0.29 TCGA-AA-A01R-01 14 96157199 96157199 C T TCL1B Nonsense_Mutation p.R97* 0.30 TCGA-AA-A01R-01 14 96707546 96707546 C T BDKRB2 Missense_Mutation p.T294M 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-AA-A01R-01 14 99866494 99866494 C T SETD3 Nonsense_Mutation p.W427* 0.31 TCGA-AA-A01R-01 15 100252748 100252748 G A MEF2A Silent p.P424P 0.23 TCGA-AA-A01R-01 15 22743131 22743131 G A GOLGA6L1 Missense_Mutation p.D506N 0.49 unknown(0) TCGA-AA-A01R-01 15 23932374 23932374 G A NDN 5'UTR 0.51 TCGA-AA-A01R-01 15 24922024 24922024 C T NPAP1 Missense_Mutation p.P337L 0.25 tolerated(0.1) probably_damaging(0.991) TCGA-AA-A01R-01 15 25959112 25959112 G A ATP10A Nonsense_Mutation p.Q685* 0.27 TCGA-AA-A01R-01 15 29385398 29385398 C T APBA2 Missense_Mutation p.A397V 0.61 deleterious(0.02) probably_damaging(0.986) TCGA-AA-A01R-01 15 29996472 29996472 G T TJP1 Silent p.P1702P 0.78 TCGA-AA-A01R-01 15 30664537 30664537 G A CHRFAM7A Silent p.P112P 0.67 TCGA-AA-A01R-01 15 34110877 34110877 G A RYR3 Silent p.T3566T 0.64 TCGA-AA-A01R-01 15 34659383 34659383 C A LPCAT4 5'UTR 0.55 TCGA-AA-A01R-01 15 38776701 38776701 A T FAM98B Silent p.G381G 0.56 TCGA-AA-A01R-01 15 40564827 40564827 G A PAK6 Missense_Mutation p.V421I 0.62 deleterious(0) probably_damaging(0.994) TCGA-AA-A01R-01 15 40648424 40648424 C - PHGR1 Frame_Shift_Del p.H59Tfs*49 0.14 TCGA-AA-A01R-01 15 41827751 41827751 G T RPAP1 Missense_Mutation p.P167Q 0.76 tolerated(0.16) benign(0.126) TCGA-AA-A01R-01 15 41961511 41961511 G A MGA Missense_Mutation p.R140H 0.62 deleterious(0.03) possibly_damaging(0.901) TCGA-AA-A01R-01 15 43820965 43820965 G T MAP1A Missense_Mutation p.A2432S 0.67 probably_damaging(0.998) TCGA-AA-A01R-01 15 44898282 44898282 G T SPG11 Nonsense_Mutation p.S1154* 0.59 TCGA-AA-A01R-01 15 45007752 45007753 - A B2M Frame_Shift_Ins p.V69Sfs*21 0.39 TCGA-AA-A01R-01 15 50831018 50831018 C T USP50 Missense_Mutation p.A231T 0.70 tolerated(1) benign(0.001) TCGA-AA-A01R-01 15 51024859 51024859 T C SPPL2A Missense_Mutation p.I319V 0.29 tolerated(0.36) benign(0.042) TCGA-AA-A01R-01 15 51747414 51747414 C T DMXL2 Silent p.A2825A 0.27 TCGA-AA-A01R-01 15 52553222 52553222 T G MYO5C Missense_Mutation p.T384P 0.34 deleterious(0) probably_damaging(0.948) TCGA-AA-A01R-01 15 52556415 52556415 G A MYO5C Missense_Mutation p.A340V 0.79 tolerated(0.2) benign(0.029) TCGA-AA-A01R-01 15 57565320 57565320 G A TCF12 Missense_Mutation p.R613H 0.60 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 15 62211516 62211516 T C VPS13C Missense_Mutation p.K2537R 0.73 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 15 62300933 62300933 A G VPS13C Missense_Mutation p.S347P 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 15 65623385 65623385 C A IGDCC3 Intron 0.66 TCGA-AA-A01R-01 15 67692501 67692501 G A IQCH Missense_Mutation p.R652H 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 15 68489809 68489809 C T RP11-315D16.2 Missense_Mutation p.E81K 0.62 unknown(0) TCGA-AA-A01R-01 15 70358541 70358541 G A TLE3 Missense_Mutation p.A130V 0.64 tolerated(0.16) possibly_damaging(0.59) TCGA-AA-A01R-01 15 71124560 71124560 C T LARP6 Missense_Mutation p.R436H 0.66 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 15 72040788 72040788 G A THSD4 Missense_Mutation p.R757K 0.72 tolerated(0.06) possibly_damaging(0.6) TCGA-AA-A01R-01 15 72104776 72104776 G A NR2E3 RNA 0.69 TCGA-AA-A01R-01 15 72494863 72494863 G A PKM Intron 0.31 TCGA-AA-A01R-01 15 72549731 72549731 G A PARP6 Silent p.G319G 0.58 TCGA-AA-A01R-01 15 73616168 73616168 C T HCN4 Missense_Mutation p.A756T 0.60 tolerated(0.16) unknown(0) TCGA-AA-A01R-01 15 74032755 74032755 C T C15orf59 Missense_Mutation p.E129K 0.73 tolerated(0.29) probably_damaging(0.996) TCGA-AA-A01R-01 15 75045573 75045573 C T CYP1A2 Silent p.C405C 0.52 TCGA-AA-A01R-01 15 75221512 75221512 A G COX5A Silent p.A54A 0.35 TCGA-AA-A01R-01 15 75310872 75310872 G A SCAMP5 Missense_Mutation p.S170N 0.72 tolerated(0.33) benign(0.082) TCGA-AA-A01R-01 15 75499491 75499491 C A C15orf39 Missense_Mutation p.P368T 0.66 deleterious(0.01) possibly_damaging(0.803) TCGA-AA-A01R-01 15 75646104 75646104 G A NEIL1 Missense_Mutation p.S248N 0.34 tolerated(0.57) benign(0) TCGA-AA-A01R-01 15 75648350 75648350 T C MAN2C1 Missense_Mutation p.D1024G 0.34 tolerated(0.2) benign(0.018) TCGA-AA-A01R-01 15 75942251 75942251 T G SNX33 Missense_Mutation p.F270V 0.34 deleterious(0) probably_damaging(0.992) TCGA-AA-A01R-01 15 81239401 81239401 T C KIAA1199 Missense_Mutation p.L1318S 0.61 tolerated(0.16) probably_damaging(0.999) TCGA-AA-A01R-01 15 81571200 81571200 T C IL16 Missense_Mutation p.L278P 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 15 82512020 82512020 T C EFTUD1 Silent p.K528K 0.25 TCGA-AA-A01R-01 15 83679095 83679095 T C C15orf40 Silent p.E44E 0.62 TCGA-AA-A01R-01 15 86312570 86312570 C T KLHL25 Missense_Mutation p.A158T 0.33 tolerated(0.34) benign(0.385) TCGA-AA-A01R-01 15 89400154 89400154 G T ACAN Missense_Mutation p.E1446D 0.63 tolerated(0.52) possibly_damaging(0.599) TCGA-AA-A01R-01 15 89744206 89744206 G A ABHD2 3'UTR 0.58 TCGA-AA-A01R-01 15 90020784 90020784 G A RHCG Missense_Mutation p.A359V 0.63 tolerated(0.14) possibly_damaging(0.665) TCGA-AA-A01R-01 15 91326121 91326121 A G BLM Silent p.A875A 0.29 TCGA-AA-A01R-01 15 91769649 91769649 T C SV2B Silent p.G52G 0.29 TCGA-AA-A01R-01 15 93567632 93567632 C T CHD2 Silent p.S1728S 0.72 TCGA-AA-A01R-01 15 98514526 98514526 C T ARRDC4 3'UTR 0.35 TCGA-AA-A01R-01 15 99451929 99451929 C T IGF1R Silent p.Y421Y 0.26 TCGA-AA-A01R-01 16 10032029 10032029 G A GRIN2A Missense_Mutation p.T265M 0.29 tolerated(0.27) possibly_damaging(0.749) TCGA-AA-A01R-01 16 10729702 10729702 G A TEKT5 Missense_Mutation p.P387L 0.35 tolerated(0.09) possibly_damaging(0.817) TCGA-AA-A01R-01 16 11001239 11001239 C T CIITA Silent p.D630D 0.33 TCGA-AA-A01R-01 16 11016097 11016097 C T CIITA Missense_Mutation p.R1075W 0.07 deleterious(0) probably_damaging(0.982) TCGA-AA-A01R-01 16 1129923 1129923 G A SSTR5 Missense_Mutation p.R352H 0.57 tolerated(0.13) benign(0.003) TCGA-AA-A01R-01 16 14041667 14041667 C T ERCC4 Silent p.N738N 0.34 TCGA-AA-A01R-01 16 1412882 1412882 C T GNPTG Silent p.H266H 0.21 TCGA-AA-A01R-01 16 1484742 1484742 G A CCDC154 Missense_Mutation p.R609W 0.36 deleterious(0) possibly_damaging(0.901) TCGA-AA-A01R-01 16 1488877 1488877 C T CCDC154 Missense_Mutation p.R282Q 0.48 deleterious(0.04) benign(0.233) TCGA-AA-A01R-01 16 15029089 15029089 G A NPIPA1 5'Flank 0.22 TCGA-AA-A01R-01 16 15811172 15811172 G A MYH11 Missense_Mutation p.R1784C 0.40 probably_damaging(1) TCGA-AA-A01R-01 16 15812270 15812270 G A MYH11 Missense_Mutation p.R1740C 0.38 probably_damaging(1) TCGA-AA-A01R-01 16 15835450 15835450 C T MYH11 Missense_Mutation p.R917Q 0.22 probably_damaging(0.996) TCGA-AA-A01R-01 16 1676164 1676164 C T CRAMP1L Silent p.Y179Y 0.28 TCGA-AA-A01R-01 16 1719106 1719106 A G CRAMP1L Missense_Mutation p.T1147A 0.48 deleterious(0.03) possibly_damaging(0.508) TCGA-AA-A01R-01 16 1828471 1828471 C T SPSB3 Missense_Mutation p.R90Q 0.41 tolerated(0.36) benign(0.006) TCGA-AA-A01R-01 16 18908139 18908139 C T SMG1 Missense_Mutation p.A78T 0.25 tolerated_low_confidence(0.62) benign(0.001) TCGA-AA-A01R-01 16 19721832 19721832 G A KNOP1 Missense_Mutation p.T355M 0.32 tolerated(0.11) benign(0.087) TCGA-AA-A01R-01 16 2012454 2012454 G A RPS2 Intron 0.37 TCGA-AA-A01R-01 16 20948094 20948094 C A DNAH3 Missense_Mutation p.E3912D 0.31 deleterious(0.03) possibly_damaging(0.666) TCGA-AA-A01R-01 16 20975196 20975196 G A DNAH3 Missense_Mutation p.T3337M 0.33 deleterious(0.02) benign(0.006) TCGA-AA-A01R-01 16 2136812 2136812 C T TSC2 Silent p.N1643N 0.32 TCGA-AA-A01R-01 16 2167554 2167554 C T PKD1 Missense_Mutation p.G441R 0.28 probably_damaging(0.995) TCGA-AA-A01R-01 16 2226115 2226115 C A TRAF7 Silent p.A604A 0.33 TCGA-AA-A01R-01 16 2256628 2256628 C T MLST8 Silent p.G104G 0.34 TCGA-AA-A01R-01 16 2284704 2284704 G A E4F1 Missense_Mutation p.E572K 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 16 23391835 23391835 G A SCNN1B Missense_Mutation p.D546N 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 16 23717720 23717720 G T ERN2 Missense_Mutation p.P222T 0.37 tolerated(0.13) possibly_damaging(0.635) TCGA-AA-A01R-01 16 24202517 24202517 G A PRKCB Missense_Mutation p.R610H 0.32 tolerated(0.07) benign(0.011) TCGA-AA-A01R-01 16 24573231 24573231 G A RBBP6 Silent p.P346P 0.28 TCGA-AA-A01R-01 16 24802272 24802272 C T TNRC6A Missense_Mutation p.T770I 0.29 tolerated(0.07) benign(0.332) TCGA-AA-A01R-01 16 25704454 25704454 A G HS3ST4 Missense_Mutation p.K239R 0.27 tolerated(0.54) benign(0.023) TCGA-AA-A01R-01 16 26147442 26147442 G A HS3ST4 Missense_Mutation p.R415Q 0.35 deleterious(0.04) possibly_damaging(0.867) TCGA-AA-A01R-01 16 28508816 28508816 G T APOBR Missense_Mutation p.E818D 0.04 tolerated(0.06) benign(0.011) TCGA-AA-A01R-01 16 28834576 28834576 C T ATXN2L 5'UTR 0.31 TCGA-AA-A01R-01 16 28847674 28847674 G A ATXN2L Missense_Mutation p.R1056H 0.32 tolerated_low_confidence(0.15) benign(0.108) TCGA-AA-A01R-01 16 28883862 28883862 G A SH2B1 Missense_Mutation p.R578H 0.23 deleterious(0.01) benign(0.041) TCGA-AA-A01R-01 16 2980420 2980420 A G FLYWCH1 Missense_Mutation p.Q111R 0.32 tolerated_low_confidence(0.21) possibly_damaging(0.527) TCGA-AA-A01R-01 16 29882918 29882918 G A SEZ6L2 3'UTR 0.26 TCGA-AA-A01R-01 16 30018552 30018552 C T DOC2A Missense_Mutation p.R199H 0.33 deleterious(0) benign(0.031) TCGA-AA-A01R-01 16 30133325 30133325 G A MAPK3 Missense_Mutation p.S58L 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-AA-A01R-01 16 30518158 30518158 G A ITGAL Missense_Mutation p.R830H 0.36 deleterious(0) probably_damaging(0.987) TCGA-AA-A01R-01 16 30724941 30724941 G A SRCAP Missense_Mutation p.R801H 0.34 unknown(0) TCGA-AA-A01R-01 16 30778093 30778093 G A RNF40 Missense_Mutation p.R442H 0.27 deleterious(0) probably_damaging(0.991) TCGA-AA-A01R-01 16 31106823 31106823 C T VKORC1 5'Flank 0.33 TCGA-AA-A01R-01 16 31234182 31234182 G A TRIM72 Missense_Mutation p.A259T 0.39 tolerated(0.1) benign(0.408) TCGA-AA-A01R-01 16 31409192 31409192 G A ITGAD Missense_Mutation p.R130H 0.30 tolerated(0.45) benign(0) TCGA-AA-A01R-01 16 31414843 31414843 A C ITGAD Missense_Mutation p.N194T 0.29 tolerated(0.08) benign(0.026) TCGA-AA-A01R-01 16 31475730 31475730 C A ARMC5 Silent p.S462S 0.39 TCGA-AA-A01R-01 16 31484787 31484787 T C TGFB1I1 Silent p.T13T 0.28 TCGA-AA-A01R-01 16 3170227 3170227 C T ZNF205 Silent p.H522H 0.33 TCGA-AA-A01R-01 16 31765251 31765251 G A ZNF720 Intron 0.36 TCGA-AA-A01R-01 16 3188458 3188458 C T ZNF213 Missense_Mutation p.R147W 0.37 deleterious(0.01) possibly_damaging(0.513) TCGA-AA-A01R-01 16 32266271 32266271 C A TP53TG3D 3'UTR 0.27 TCGA-AA-A01R-01 16 3293534 3293534 G A MEFV Silent p.G651G 0.29 TCGA-AA-A01R-01 16 336593 336593 C T PDIA2 Missense_Mutation p.A427V 0.10 tolerated(0.37) benign(0.129) TCGA-AA-A01R-01 16 3367832 3367832 G A ZNF75A Missense_Mutation p.R285Q 0.44 tolerated(0.15) benign(0.092) TCGA-AA-A01R-01 16 3486828 3486828 C T ZNF597 Missense_Mutation p.V291I 0.41 tolerated(0.1) benign(0) TCGA-AA-A01R-01 16 3639380 3639380 G - SLX4 Frame_Shift_Del p.P1420Qfs*30 0.34 TCGA-AA-A01R-01 16 3639799 3639799 G A SLX4 Silent p.S1280S 0.24 TCGA-AA-A01R-01 16 3658481 3658481 G A SLX4 Missense_Mutation p.T162M 0.29 deleterious(0) benign(0.391) TCGA-AA-A01R-01 16 3713478 3713478 G A TRAP1 Missense_Mutation p.T552M 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-AA-A01R-01 16 4029167 4029167 C T ADCY9 Missense_Mutation p.A877T 0.30 tolerated(0.13) benign(0.029) TCGA-AA-A01R-01 16 4386971 4386971 G A GLIS2 Missense_Mutation p.A341T 0.26 tolerated(0.59) benign(0.006) TCGA-AA-A01R-01 16 4431738 4431738 T C VASN Missense_Mutation p.F287S 0.24 deleterious(0.04) benign(0.257) TCGA-AA-A01R-01 16 4498739 4498739 C T DNAJA3 Silent p.P377P 0.32 TCGA-AA-A01R-01 16 4625722 4625722 G A C16orf96 Missense_Mutation p.R414Q 0.32 tolerated(1) benign(0.417) TCGA-AA-A01R-01 16 4643242 4643242 G A C16orf96 Missense_Mutation p.R931H 0.30 tolerated(0.05) possibly_damaging(0.715) TCGA-AA-A01R-01 16 47162257 47162257 C A NETO2 Missense_Mutation p.A154S 0.29 tolerated(0.05) benign(0.386) TCGA-AA-A01R-01 16 4744986 4744986 T C NUDT16L1 Missense_Mutation p.Y148H 0.33 deleterious(0.02) probably_damaging(0.94) TCGA-AA-A01R-01 16 4797410 4797410 C T C16orf71 Silent p.P449P 0.28 TCGA-AA-A01R-01 16 4827789 4827789 C T SEPT12 3'UTR 0.31 TCGA-AA-A01R-01 16 4828088 4828088 G A SEPT12 Missense_Mutation p.R292C 0.27 deleterious(0) probably_damaging(0.982) TCGA-AA-A01R-01 16 4953943 4953943 C T PPL Silent p.A87A 0.29 TCGA-AA-A01R-01 16 49669708 49669708 C T ZNF423 Missense_Mutation p.G1119S 0.26 tolerated(0.78) benign(0.001) TCGA-AA-A01R-01 16 50745017 50745017 G A NOD2 Missense_Mutation p.D399N 0.26 tolerated(0.08) benign(0.072) TCGA-AA-A01R-01 16 51171334 51171334 C A SALL1 Missense_Mutation p.A1222S 0.22 deleterious(0.03) benign(0.016) TCGA-AA-A01R-01 16 57113024 57113024 C - NLRC5 Frame_Shift_Del p.H1717Ifs*29 0.23 TCGA-AA-A01R-01 16 57713122 57713122 G A GPR97 Missense_Mutation p.V176M 0.25 tolerated(0.07) probably_damaging(0.98) TCGA-AA-A01R-01 16 57719693 57719693 G T GPR97 Silent p.A465A 0.34 TCGA-AA-A01R-01 16 57722356 57722356 T C GPR97 Missense_Mutation p.S545P 0.31 deleterious(0.03) possibly_damaging(0.794) TCGA-AA-A01R-01 16 57799480 57799480 G A KIFC3 Missense_Mutation p.A468V 0.25 tolerated(1) benign(0.015) TCGA-AA-A01R-01 16 58043956 58043956 G A USB1 Missense_Mutation p.R130H 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-AA-A01R-01 16 597017 597017 G A CAPN15 Missense_Mutation p.G60D 0.36 tolerated_low_confidence(0.1) possibly_damaging(0.899) TCGA-AA-A01R-01 16 65016004 65016004 G A CDH11 Silent p.T400T 0.30 TCGA-AA-A01R-01 16 66511470 66511470 C T BEAN1 Silent p.D99D 0.30 TCGA-AA-A01R-01 16 66600453 66600453 G T CMTM1 Missense_Mutation p.A13S 0.41 tolerated(0.86) possibly_damaging(0.866) TCGA-AA-A01R-01 16 66997155 66997155 C T CES3 Silent p.G52G 0.38 TCGA-AA-A01R-01 16 67183633 67183633 C T B3GNT9 Silent p.L252L 0.40 TCGA-AA-A01R-01 16 67226189 67226189 A C E2F4 Missense_Mutation p.K20T 0.28 deleterious(0) benign(0.044) TCGA-AA-A01R-01 16 67265246 67265246 C T FHOD1 Missense_Mutation p.G838S 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 16 67270509 67270509 T C FHOD1 Missense_Mutation p.I424V 0.30 tolerated(0.74) benign(0.001) TCGA-AA-A01R-01 16 67319312 67319312 G A PLEKHG4 Missense_Mutation p.R772H 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 16 67682156 67682156 T C RLTPR Missense_Mutation p.S425P 0.18 tolerated(0.23) benign(0.106) TCGA-AA-A01R-01 16 67991926 67991926 T C SLC12A4 Missense_Mutation p.M124V 0.39 tolerated(0.1) possibly_damaging(0.535) TCGA-AA-A01R-01 16 682615 682615 G A WFIKKN1 Missense_Mutation p.V69M 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 16 68732331 68732331 A C CDH3 3'UTR 0.35 TCGA-AA-A01R-01 16 68835711 68835711 A G CDH1 Missense_Mutation p.Y101C 0.33 deleterious(0.05) possibly_damaging(0.84) TCGA-AA-A01R-01 16 70211271 70211271 C T CLEC18C Missense_Mutation p.A115V 0.23 tolerated(0.6) benign(0.001) TCGA-AA-A01R-01 16 71007853 71007854 - GA HYDIN Frame_Shift_Ins p.R1703Lfs*51 0.13 TCGA-AA-A01R-01 16 71894204 71894204 C T ZNF821 Missense_Mutation p.R319Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 16 720944 720944 C T RHOT2 Missense_Mutation p.T231M 0.33 tolerated(0.22) benign(0.006) TCGA-AA-A01R-01 16 72153458 72153458 C T PMFBP1 Intron 0.54 TCGA-AA-A01R-01 16 72830681 72830681 A G ZFHX3 Missense_Mutation p.V1967A 0.08 benign(0.012) TCGA-AA-A01R-01 16 72984449 72984449 A G ZFHX3 Silent p.C1045C 0.32 TCGA-AA-A01R-01 16 74919552 74919552 G A WDR59 Silent p.I896I 0.23 TCGA-AA-A01R-01 16 74983682 74983682 G A WDR59 Missense_Mutation p.A114V 0.31 tolerated(0.11) benign(0.255) TCGA-AA-A01R-01 16 780555 780555 C T NARFL Silent p.A431A 0.47 TCGA-AA-A01R-01 16 82101901 82101901 G A HSD17B2 Missense_Mutation p.R131H 0.34 tolerated(0.12) benign(0.103) TCGA-AA-A01R-01 16 84199465 84199465 C T DNAAF1 Missense_Mutation p.R314W 0.33 deleterious(0) possibly_damaging(0.888) TCGA-AA-A01R-01 16 84514302 84514303 - C TLDC1 Frame_Shift_Ins p.Q364Afs*12 0.28 TCGA-AA-A01R-01 16 84691277 84691277 G A KLHL36 Silent p.T288T 0.23 TCGA-AA-A01R-01 16 84879517 84879517 G A CRISPLD2 Intron 0.31 TCGA-AA-A01R-01 16 85143971 85143971 G A FAM92B Missense_Mutation p.T39M 0.32 deleterious(0.01) possibly_damaging(0.906) TCGA-AA-A01R-01 16 85952279 85952279 C T IRF8 Silent p.G286G 0.23 TCGA-AA-A01R-01 16 8738510 8738510 G T METTL22 Missense_Mutation p.K369N 0.32 deleterious(0.03) benign(0.005) TCGA-AA-A01R-01 16 88495834 88495835 - C ZNF469 Frame_Shift_Ins p.H655Pfs*83 0.27 TCGA-AA-A01R-01 16 88783090 88783090 G A PIEZO1 Missense_Mutation p.A2268V 0.47 deleterious(0.03) possibly_damaging(0.573) TCGA-AA-A01R-01 16 89167349 89167349 G A ACSF3 Missense_Mutation p.G87E 0.24 tolerated(0.38) benign(0.021) TCGA-AA-A01R-01 16 89757906 89757906 G A CDK10 Silent p.P96P 0.34 TCGA-AA-A01R-01 16 8987895 8987895 C T USP7 Missense_Mutation p.R1090H 0.23 deleterious(0.03) probably_damaging(0.983) TCGA-AA-A01R-01 16 89970553 89970553 G C TCF25 Missense_Mutation p.S470T 0.32 tolerated(0.23) benign(0.378) TCGA-AA-A01R-01 16 90110318 90110318 C T GAS8 3'UTR 0.34 TCGA-AA-A01R-01 16 9014216 9014216 G A USP7 Missense_Mutation p.A204V 0.36 tolerated(0.55) benign(0.002) TCGA-AA-A01R-01 16 904627 904627 G A LMF1 Missense_Mutation p.R537W 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 16 929712 929712 G A LMF1 Missense_Mutation p.A252V 0.25 deleterious(0) probably_damaging(0.958) TCGA-AA-A01R-01 17 10233778 10233778 C T MYH13 Silent p.T787T 0.37 TCGA-AA-A01R-01 17 1520020 1520020 C T SLC43A2 Silent p.G68G 0.28 TCGA-AA-A01R-01 17 1549654 1549654 G T RILP 3'UTR 0.56 TCGA-AA-A01R-01 17 15968278 15968278 T C NCOR1 Silent p.G1669G 0.34 TCGA-AA-A01R-01 17 16470734 16470734 C A ZNF287 Missense_Mutation p.E104D 0.35 tolerated(0.06) probably_damaging(0.987) TCGA-AA-A01R-01 17 16665759 16665759 G A CCDC144A Missense_Mutation p.D1267N 0.15 deleterious(0.04) benign(0.27) TCGA-AA-A01R-01 17 17030083 17030083 G A MPRIP Missense_Mutation p.R112H 0.32 deleterious(0) probably_damaging(0.984) TCGA-AA-A01R-01 17 17715868 17715868 C T SREBF1 3'UTR 0.36 TCGA-AA-A01R-01 17 18047264 18047264 C A MYO15A Missense_Mutation p.L2043M 0.29 unknown(0) TCGA-AA-A01R-01 17 18208457 18208457 G A TOP3A Silent p.I156I 0.22 TCGA-AA-A01R-01 17 18874870 18874870 G A FAM83G Silent p.P758P 0.28 TCGA-AA-A01R-01 17 18881884 18881884 A G FAM83G Silent p.S365S 0.28 TCGA-AA-A01R-01 17 19284064 19284064 G A MAPK7 Missense_Mutation p.R181H 0.35 deleterious(0) possibly_damaging(0.898) TCGA-AA-A01R-01 17 1936801 1936801 C T DPH1 Missense_Mutation p.R27W 0.42 deleterious(0) possibly_damaging(0.609) TCGA-AA-A01R-01 17 19687020 19687020 G A ULK2 Missense_Mutation p.T817M 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 17 20406525 20406525 G A RP11-434D2.7 3'Flank 0.20 TCGA-AA-A01R-01 17 20931957 20931957 C T USP22 Missense_Mutation p.V68I 0.32 tolerated(0.06) benign(0.003) TCGA-AA-A01R-01 17 25944415 25944415 G A KSR1 Missense_Mutation p.R748Q 0.30 deleterious(0) possibly_damaging(0.861) TCGA-AA-A01R-01 17 2597230 2597230 G A CLUH Silent p.L1026L 0.34 TCGA-AA-A01R-01 17 26818764 26818764 G A SLC13A2 Missense_Mutation p.G307S 0.32 tolerated(0.31) benign(0.177) TCGA-AA-A01R-01 17 26942076 26942076 G A KIAA0100 3'UTR 0.32 TCGA-AA-A01R-01 17 26946934 26946934 G A KIAA0100 Missense_Mutation p.R1822W 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 17 27030737 27030737 G A PROCA1 Missense_Mutation p.R284W 0.25 deleterious(0.02) probably_damaging(0.963) TCGA-AA-A01R-01 17 27044252 27044252 G A RAB34 Silent p.R68R 0.36 TCGA-AA-A01R-01 17 27238234 27238234 G A PHF12 Missense_Mutation p.T704M 0.35 tolerated(0.06) possibly_damaging(0.474) TCGA-AA-A01R-01 17 27278116 27278116 T G PHF12 5'UTR 0.36 TCGA-AA-A01R-01 17 27935076 27935076 G A ANKRD13B Missense_Mutation p.R108Q 0.36 tolerated(0.09) possibly_damaging(0.776) TCGA-AA-A01R-01 17 28545151 28545151 G A SLC6A4 Missense_Mutation p.A228V 0.32 deleterious(0) probably_damaging(0.99) TCGA-AA-A01R-01 17 30806366 30806366 G A PSMD11 Missense_Mutation p.R337Q 0.26 deleterious(0) probably_damaging(0.947) TCGA-AA-A01R-01 17 33463189 33463189 C T NLE1 Missense_Mutation p.R337Q 0.34 tolerated(0.24) benign(0.066) TCGA-AA-A01R-01 17 33769111 33769111 C T SLFN13 Missense_Mutation p.A465T 0.21 tolerated(0.12) benign(0.181) TCGA-AA-A01R-01 17 3402461 3402461 C T ASPA 3'UTR 0.26 TCGA-AA-A01R-01 17 3491525 3491527 TTC - SHPK In_Frame_Del p.K393del 0.25 TCGA-AA-A01R-01 17 36070626 36070628 GAG - HNF1B In_Frame_Del p.S364del 0.25 TCGA-AA-A01R-01 17 3660366 3660366 C T ITGAE Silent p.P361P 0.40 TCGA-AA-A01R-01 17 37420430 37420430 T A FBXL20 Missense_Mutation p.R401W 0.30 deleterious(0) benign(0.04) TCGA-AA-A01R-01 17 38176550 38176550 G A MED24 Missense_Mutation p.R894W 0.29 deleterious(0) possibly_damaging(0.812) TCGA-AA-A01R-01 17 38179499 38179499 G A MED24 Missense_Mutation p.T712M 0.34 tolerated(0.13) benign(0.035) TCGA-AA-A01R-01 17 38252961 38252961 C T NR1D1 Missense_Mutation p.A148T 0.35 deleterious(0) probably_damaging(0.992) TCGA-AA-A01R-01 17 38345551 38345551 G A RAPGEFL1 Silent p.T140T 0.26 TCGA-AA-A01R-01 17 3839671 3839671 G A ATP2A3 Missense_Mutation p.T805M 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01R-01 17 38512519 38512519 G A RARA 3'UTR 0.28 TCGA-AA-A01R-01 17 38793808 38793808 G A SMARCE1 Missense_Mutation p.T58M 0.35 deleterious(0.01) possibly_damaging(0.791) TCGA-AA-A01R-01 17 38935973 38935973 C T KRT27 Silent p.A275A 0.33 TCGA-AA-A01R-01 17 39991473 39991473 G A NT5C3B Nonsense_Mutation p.R55* 0.19 TCGA-AA-A01R-01 17 40179658 40179658 G A ZNF385C Missense_Mutation p.A419V 0.49 tolerated(0.29) probably_damaging(0.996) TCGA-AA-A01R-01 17 40269779 40269779 G A KAT2A Missense_Mutation p.R449C 0.35 deleterious(0) probably_damaging(0.95) TCGA-AA-A01R-01 17 4053288 4053288 T C CYB5D2 Silent p.N118N 0.32 TCGA-AA-A01R-01 17 40557353 40557353 C T PTRF Silent p.S175S 0.30 TCGA-AA-A01R-01 17 40720554 40720554 G A MLX Missense_Mutation p.S103N 0.39 tolerated(0.09) possibly_damaging(0.691) TCGA-AA-A01R-01 17 40765685 40765685 C A TUBG1 Silent p.A209A 0.34 TCGA-AA-A01R-01 17 40957864 40957864 C T CNTD1 Missense_Mutation p.T181I 0.37 deleterious(0.03) probably_damaging(0.972) TCGA-AA-A01R-01 17 40986380 40986380 G A PSME3 Missense_Mutation p.R21Q 0.30 tolerated(0.23) benign(0.069) TCGA-AA-A01R-01 17 40997137 40997137 G A AOC2 Missense_Mutation p.R165H 0.44 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 17 42153097 42153097 G A G6PC3 Missense_Mutation p.V243M 0.34 tolerated(0.48) benign(0.003) TCGA-AA-A01R-01 17 42156199 42156199 C T HDAC5 Missense_Mutation p.A1044T 0.29 deleterious(0) possibly_damaging(0.522) TCGA-AA-A01R-01 17 42271702 42271702 C A ATXN7L3 Missense_Mutation p.G332C 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.47) TCGA-AA-A01R-01 17 42284924 42284924 G A UBTF Silent p.D689D 0.38 TCGA-AA-A01R-01 17 42334804 42334804 G A SLC4A1 Missense_Mutation p.R514C 0.31 deleterious(0) probably_damaging(0.989) TCGA-AA-A01R-01 17 42750877 42750877 G A CCDC43 3'Flank 0.34 TCGA-AA-A01R-01 17 42828231 42828231 G A DBF4B Silent p.A486A 0.28 TCGA-AA-A01R-01 17 42929110 42929110 G A EFTUD2 Missense_Mutation p.R931W 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 17 43180340 43180340 C T NMT1 Nonsense_Mutation p.R339* 0.32 TCGA-AA-A01R-01 17 43227152 43227152 C T HEXIM1 Missense_Mutation p.P199S 0.47 deleterious(0.03) probably_damaging(0.992) TCGA-AA-A01R-01 17 43347913 43347913 C T MAP3K14-AS1 3'Flank 0.37 TCGA-AA-A01R-01 17 43472970 43472970 A G ARHGAP27 Missense_Mutation p.M500T 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 17 43922344 43922344 C T SPPL2C Silent p.Y24Y 0.35 TCGA-AA-A01R-01 17 44051760 44051760 C T MAPT Missense_Mutation p.A77V 0.28 deleterious(0) benign(0.04) TCGA-AA-A01R-01 17 44117146 44117146 C A KANSL1 Missense_Mutation p.A709S 0.40 tolerated(0.82) benign(0.005) TCGA-AA-A01R-01 17 4446342 4446342 C T MYBBP1A Missense_Mutation p.A920T 0.26 deleterious(0.02) benign(0.263) TCGA-AA-A01R-01 17 44827147 44827147 G T NSF Missense_Mutation p.K639N 0.31 deleterious(0) probably_damaging(0.995) TCGA-AA-A01R-01 17 4500203 4500203 C T SMTNL2 Silent p.G346G 0.38 TCGA-AA-A01R-01 17 45914531 45914531 C T LRRC46 3'UTR 0.19 TCGA-AA-A01R-01 17 46135912 46135912 T G NFE2L1 Missense_Mutation p.S410A 0.38 tolerated(0.85) benign(0.001) TCGA-AA-A01R-01 17 47123644 47123644 C T IGF2BP1 Missense_Mutation p.T517M 0.27 deleterious(0.03) probably_damaging(0.961) TCGA-AA-A01R-01 17 47590210 47590210 T C NGFR Missense_Mutation p.S375P 0.29 deleterious(0.01) possibly_damaging(0.876) TCGA-AA-A01R-01 17 4795792 4795792 C T MINK1 Missense_Mutation p.P728L 0.30 tolerated(0.18) benign(0.058) TCGA-AA-A01R-01 17 48153045 48153045 C T ITGA3 Silent p.H540H 0.31 TCGA-AA-A01R-01 17 48154481 48154481 G A ITGA3 Missense_Mutation p.R689H 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 17 48431106 48431106 G A XYLT2 Missense_Mutation p.R84H 0.33 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-AA-A01R-01 17 48545768 48545768 G A CHAD Missense_Mutation p.T136I 0.41 tolerated(0.22) benign(0.007) TCGA-AA-A01R-01 17 48560712 48560712 C T RSAD1 Nonsense_Mutation p.R306* 0.30 TCGA-AA-A01R-01 17 48614046 48614046 C T EPN3 Silent p.I43I 0.26 TCGA-AA-A01R-01 17 48650000 48650000 G A CACNA1G Missense_Mutation p.G278S 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 17 48741100 48741100 G A ABCC3 Missense_Mutation p.A353T 0.34 tolerated(0.25) possibly_damaging(0.654) TCGA-AA-A01R-01 17 4927270 4927270 G A KIF1C Missense_Mutation p.A1046T 0.44 tolerated_low_confidence(0.64) benign(0.001) TCGA-AA-A01R-01 17 4936850 4936850 C T SLC52A1 Missense_Mutation p.A312T 0.36 tolerated(0.26) benign(0.116) TCGA-AA-A01R-01 17 5085053 5085053 T C ZNF594 3'UTR 0.27 TCGA-AA-A01R-01 17 51901020 51901020 C T KIF2B Missense_Mutation p.P209L 0.36 tolerated(0.18) benign(0.001) TCGA-AA-A01R-01 17 53798000 53798000 C A TMEM100 3'UTR 0.15 TCGA-AA-A01R-01 17 56386197 56386197 C T BZRAP1 Missense_Mutation p.G1479D 0.47 deleterious(0.02) probably_damaging(0.946) TCGA-AA-A01R-01 17 56403666 56403666 C T BZRAP1 Silent p.T186T 0.21 TCGA-AA-A01R-01 17 56429405 56429405 A G SUPT4H1 Intron 0.37 TCGA-AA-A01R-01 17 56679902 56679902 T C TEX14 Silent p.V468V 0.36 TCGA-AA-A01R-01 17 56688700 56688700 G A TEX14 Missense_Mutation p.R342W 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 17 57754436 57754436 C T CLTC Missense_Mutation p.R895C 0.39 deleterious(0.01) probably_damaging(0.958) TCGA-AA-A01R-01 17 58227391 58227391 G A CA4 5'UTR 0.50 TCGA-AA-A01R-01 17 58286133 58286133 C G USP32 Silent p.G885G 0.31 TCGA-AA-A01R-01 17 58740537 58740537 C T PPM1D Missense_Mutation p.A481V 0.23 deleterious_low_confidence(0.02) benign(0.046) TCGA-AA-A01R-01 17 59971158 59971158 G A INTS2 Missense_Mutation p.R564C 0.35 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 17 60743591 60743591 C T MRC2 Silent p.Y219Y 0.35 TCGA-AA-A01R-01 17 60744869 60744869 C T MRC2 Silent p.N364N 0.35 TCGA-AA-A01R-01 17 62038709 62038709 C T SCN4A Silent p.P563P 0.35 TCGA-AA-A01R-01 17 62859226 62859226 A G LRRC37A3 Intron 0.27 TCGA-AA-A01R-01 17 63526054 63526054 C T AXIN2 3'UTR 0.40 TCGA-AA-A01R-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.31 TCGA-AA-A01R-01 17 64219836 64219836 G A APOH Missense_Mutation p.P132L 0.32 tolerated(0.34) benign(0.304) TCGA-AA-A01R-01 17 650566 650566 C T GEMIN4 Silent p.A239A 0.25 TCGA-AA-A01R-01 17 65134178 65134178 G A HELZ Missense_Mutation p.A941V 0.35 deleterious(0.01) probably_damaging(0.93) TCGA-AA-A01R-01 17 66267544 66267544 T C SLC16A6 Missense_Mutation p.T253A 0.06 tolerated(0.64) benign(0.003) TCGA-AA-A01R-01 17 6690670 6690670 C T FBXO39 Nonsense_Mutation p.Q418* 0.31 TCGA-AA-A01R-01 17 67136855 67136855 C T ABCA6 5'UTR 0.26 TCGA-AA-A01R-01 17 67304435 67304435 C T ABCA5 Missense_Mutation p.A182T 0.27 deleterious(0.02) benign(0.11) TCGA-AA-A01R-01 17 68171231 68171231 C T KCNJ2 Silent p.D17D 0.32 TCGA-AA-A01R-01 17 70117952 70117952 C T SOX9 Silent p.G140G 0.35 TCGA-AA-A01R-01 17 70118949 70118949 A G SOX9 Missense_Mutation p.Y174C 0.28 deleterious(0.01) possibly_damaging(0.671) TCGA-AA-A01R-01 17 70118954 70118954 C T SOX9 Missense_Mutation p.P176S 0.35 deleterious(0.01) benign(0.021) TCGA-AA-A01R-01 17 7129388 7129388 C T DVL2 Silent p.P669P 0.28 TCGA-AA-A01R-01 17 71411954 71411954 C A SDK2 Missense_Mutation p.Q788H 0.15 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 17 71427803 71427803 G A SDK2 Missense_Mutation p.R440C 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A01R-01 17 71431659 71431659 G A SDK2 Silent p.T375T 0.24 TCGA-AA-A01R-01 17 722782 722782 C T NXN Silent p.S239S 0.28 TCGA-AA-A01R-01 17 7256610 7256610 G A KCTD11 Missense_Mutation p.V117I 0.31 tolerated(0.07) benign(0.026) TCGA-AA-A01R-01 17 72915594 72915594 C T USH1G Missense_Mutation p.R446Q 0.28 deleterious(0) probably_damaging(0.936) TCGA-AA-A01R-01 17 72920984 72920984 G A OTOP2 Missense_Mutation p.R86H 0.32 deleterious(0) possibly_damaging(0.66) TCGA-AA-A01R-01 17 72999642 72999642 G A CDR2L Missense_Mutation p.G291S 0.42 tolerated(0.49) benign(0.041) TCGA-AA-A01R-01 17 7323728 7323728 C - SPEM1 Frame_Shift_Del p.E10Sfs*36 0.26 TCGA-AA-A01R-01 17 73568096 73568096 A G LLGL2 Missense_Mutation p.D804G 0.28 tolerated(0.09) possibly_damaging(0.698) TCGA-AA-A01R-01 17 73623540 73623540 C T RECQL5 Missense_Mutation p.E980K 0.32 deleterious(0) possibly_damaging(0.79) TCGA-AA-A01R-01 17 73748396 73748396 C T ITGB4 Missense_Mutation p.A1312V 0.39 deleterious(0.03) probably_damaging(0.968) TCGA-AA-A01R-01 17 74150250 74150250 C A RNF157 Intron 0.28 TCGA-AA-A01R-01 17 74261640 74261640 G A UBALD2 Silent p.V18V 0.21 TCGA-AA-A01R-01 17 74287751 74287751 G A QRICH2 Silent p.Y853Y 0.35 TCGA-AA-A01R-01 17 74288292 74288292 C T QRICH2 Missense_Mutation p.R673H 0.30 tolerated(0.74) benign(0.002) TCGA-AA-A01R-01 17 74340789 74340789 G A PRPSAP1 Missense_Mutation p.R85C 0.30 deleterious(0) probably_damaging(0.995) TCGA-AA-A01R-01 17 7468154 7468154 C T SENP3 Nonsense_Mutation p.R310* 0.53 TCGA-AA-A01R-01 17 74714887 74714887 G A JMJD6 Missense_Mutation p.T379M 0.26 tolerated_low_confidence(0.18) benign(0.135) TCGA-AA-A01R-01 17 74944948 74944948 C T MGAT5B 3'UTR 0.41 TCGA-AA-A01R-01 17 75202891 75202891 C T SEC14L1 Silent p.L475L 0.31 TCGA-AA-A01R-01 17 76115097 76115097 G A TMC6 Silent p.P614P 0.30 TCGA-AA-A01R-01 17 76487582 76487582 G A DNAH17 Silent p.D2190D 0.36 TCGA-AA-A01R-01 17 76851793 76851793 C T TIMP2 Missense_Mutation p.A207T 0.32 tolerated(0.49) benign(0.001) TCGA-AA-A01R-01 17 76972209 76972209 C T LGALS3BP Missense_Mutation p.D28N 0.23 tolerated(0.67) benign(0.004) TCGA-AA-A01R-01 17 7758884 7758884 G A TMEM88 Missense_Mutation p.R111H 0.44 deleterious(0.04) probably_damaging(0.923) TCGA-AA-A01R-01 17 77755566 77755566 C T CBX2 Missense_Mutation p.A85V 0.32 tolerated(1) benign(0.001) TCGA-AA-A01R-01 17 77914831 77914831 C T TBC1D16 Missense_Mutation p.G711R 0.30 deleterious(0) probably_damaging(0.962) TCGA-AA-A01R-01 17 77987304 77987304 A T TBC1D16 Missense_Mutation p.S15T 0.30 tolerated(0.08) probably_damaging(0.995) TCGA-AA-A01R-01 17 78178056 78178056 C T CARD14 Missense_Mutation p.R772C 0.26 deleterious(0) probably_damaging(0.988) TCGA-AA-A01R-01 17 78857651 78857651 G A RPTOR Missense_Mutation p.R574H 0.42 deleterious(0) probably_damaging(0.971) TCGA-AA-A01R-01 17 79060365 79060365 G A BAIAP2 Silent p.S158S 0.26 TCGA-AA-A01R-01 17 79174160 79174160 C T AZI1 Missense_Mutation p.R292H 0.34 tolerated(0.1) benign(0.004) TCGA-AA-A01R-01 17 79424554 79424554 C A RP11-1055B8.7 Silent p.S1659S 0.37 TCGA-AA-A01R-01 17 79425413 79425413 G A RP11-1055B8.7 Missense_Mutation p.R1755H 0.31 benign(0.008) TCGA-AA-A01R-01 17 7942706 7942706 G T ALOX15B Missense_Mutation p.E50D 0.30 tolerated(0.36) possibly_damaging(0.881) TCGA-AA-A01R-01 17 7976993 7976993 A G ALOX12B Silent p.A579A 0.32 TCGA-AA-A01R-01 17 79826624 79826624 C T ARHGDIA 3'UTR 0.24 TCGA-AA-A01R-01 17 79870453 79870453 G A SIRT7 Missense_Mutation p.R348C 0.36 tolerated(0.06) benign(0.005) TCGA-AA-A01R-01 17 79954685 79954685 G A ASPSCR1 Missense_Mutation p.R299Q 0.13 tolerated(0.59) unknown(0) TCGA-AA-A01R-01 17 80013952 80013952 C T GPS1 Missense_Mutation p.R344C 0.43 tolerated(0.05) benign(0.033) TCGA-AA-A01R-01 17 80020776 80020776 G A DUS1L Silent p.T157T 0.29 TCGA-AA-A01R-01 17 8050604 8050604 G A PER1 Silent p.N531N 0.23 TCGA-AA-A01R-01 17 8092521 8092521 A G C17orf59 Missense_Mutation p.M313T 0.24 tolerated(0.1) benign(0.299) TCGA-AA-A01R-01 17 8363448 8363448 G A NDEL1 Missense_Mutation p.R305Q 0.29 tolerated(0.71) benign(0.002) TCGA-AA-A01R-01 17 8409702 8409702 G A MYH10 Missense_Mutation p.A1107V 0.30 benign(0.115) TCGA-AA-A01R-01 17 9808215 9808215 C T RCVRN Missense_Mutation p.A95T 0.29 tolerated(0.1) benign(0) TCGA-AA-A01R-01 18 10468502 10468502 G T APCDD1 Missense_Mutation p.S32I 0.28 tolerated(0.08) possibly_damaging(0.452) TCGA-AA-A01R-01 18 10532792 10532792 C T NAPG Missense_Mutation p.A70V 0.22 tolerated(0.09) benign(0.07) TCGA-AA-A01R-01 18 11752540 11752540 C T GNAL Intron 0.35 TCGA-AA-A01R-01 18 13055897 13055897 C T CEP192 Missense_Mutation p.T1103I 0.37 tolerated(0.17) benign(0.107) TCGA-AA-A01R-01 18 13069738 13069738 T C CEP192 Missense_Mutation p.V1686A 0.30 tolerated(0.17) benign(0.302) TCGA-AA-A01R-01 18 14822643 14822643 T C ANKRD30B Silent p.L785L 0.34 TCGA-AA-A01R-01 18 19057271 19057271 G A GREB1L Missense_Mutation p.R837H 0.34 tolerated(0.08) possibly_damaging(0.682) TCGA-AA-A01R-01 18 202914 202914 C T USP14 Missense_Mutation p.T304M 0.33 deleterious(0.01) benign(0.291) TCGA-AA-A01R-01 18 21136549 21136549 G A NPC1 Silent p.S328S 0.37 TCGA-AA-A01R-01 18 22804373 22804373 C T ZNF521 Missense_Mutation p.S1170N 0.28 tolerated_low_confidence(0.26) benign(0.142) TCGA-AA-A01R-01 18 22804685 22804685 T G ZNF521 Missense_Mutation p.K1066T 0.42 tolerated(0.19) benign(0.035) TCGA-AA-A01R-01 18 23854787 23854787 C T TAF4B Missense_Mutation p.P253L 0.27 tolerated(0.06) possibly_damaging(0.449) TCGA-AA-A01R-01 18 23901113 23901113 C T TAF4B Silent p.G694G 0.21 TCGA-AA-A01R-01 18 24445655 24445655 C A AQP4 5'UTR 0.36 TCGA-AA-A01R-01 18 28908192 28908192 G A DSG1 Missense_Mutation p.R86H 0.21 tolerated(0.1) probably_damaging(0.932) TCGA-AA-A01R-01 18 29044177 29044177 C - DSG3 Frame_Shift_Del p.P369Qfs*6 0.20 TCGA-AA-A01R-01 18 29211052 29211052 T C B4GALT6 Missense_Mutation p.M216V 0.32 tolerated(0.08) benign(0.021) TCGA-AA-A01R-01 18 29790608 29790608 T C MEP1B Missense_Mutation p.L355P 0.27 deleterious(0) probably_damaging(0.995) TCGA-AA-A01R-01 18 30092759 30092759 C A WBP11P1 RNA 0.37 TCGA-AA-A01R-01 18 3067309 3067309 G A MYOM1 Missense_Mutation p.A1670V 0.32 tolerated(0.13) benign(0.048) TCGA-AA-A01R-01 18 31325464 31325464 G A ASXL3 Missense_Mutation p.M1884I 0.29 benign(0.005) TCGA-AA-A01R-01 18 31325872 31325872 A G ASXL3 Silent p.P2020P 0.20 TCGA-AA-A01R-01 18 39637995 39637995 G A PIK3C3 Silent p.T804T 0.25 TCGA-AA-A01R-01 18 43205654 43205654 C T SLC14A2 Missense_Mutation p.R53W 0.30 deleterious(0) possibly_damaging(0.677) TCGA-AA-A01R-01 18 43484051 43484051 C T EPG5 Missense_Mutation p.R1454H 0.32 tolerated(0.07) probably_damaging(0.984) TCGA-AA-A01R-01 18 43495562 43495562 G A EPG5 Missense_Mutation p.R1203W 0.30 deleterious(0) probably_damaging(0.988) TCGA-AA-A01R-01 18 44560277 44560277 C T TCEB3B Silent p.T453T 0.39 TCGA-AA-A01R-01 18 44561631 44561631 G A TCEB3B Missense_Mutation p.A2V 0.05 deleterious_low_confidence(0.04) benign(0.408) TCGA-AA-A01R-01 18 44627434 44627434 A G KATNAL2 3'UTR 0.55 TCGA-AA-A01R-01 18 45566339 45566339 C T ZBTB7C Silent p.P380P 0.30 TCGA-AA-A01R-01 18 47329180 47329180 G A ACAA2 Silent p.Y20Y 0.28 TCGA-AA-A01R-01 18 48458652 48458652 A G ME2 Missense_Mutation p.S447G 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 18 51888161 51888161 G A C18orf54 Silent p.P144P 0.37 TCGA-AA-A01R-01 18 5397204 5397204 C T EPB41L3 Silent p.T898T 0.27 TCGA-AA-A01R-01 18 55222145 55222145 C T FECH Missense_Mutation p.A288T 0.20 deleterious(0.01) probably_damaging(0.934) TCGA-AA-A01R-01 18 55230168 55230168 G A FECH Missense_Mutation p.R221W 0.34 deleterious(0.02) benign(0.415) TCGA-AA-A01R-01 18 55270050 55270050 A C NARS Silent p.T459T 0.26 TCGA-AA-A01R-01 18 55335534 55335534 C T ATP8B1 Intron 0.38 TCGA-AA-A01R-01 18 59894589 59894589 G A KIAA1468 Missense_Mutation p.R309Q 0.28 deleterious(0) probably_damaging(0.988) TCGA-AA-A01R-01 18 61654508 61654508 C T SERPINB8 Missense_Mutation p.P374L 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 18 64172238 64172238 C T CDH19 Silent p.P710P 0.27 TCGA-AA-A01R-01 18 67068504 67068504 A G DOK6 Missense_Mutation p.I8M 0.31 deleterious(0) probably_damaging(0.947) TCGA-AA-A01R-01 18 6966164 6966164 G A LAMA1 Silent p.Y2344Y 0.25 TCGA-AA-A01R-01 18 6974995 6974995 G A LAMA1 Missense_Mutation p.A2177V 0.24 deleterious(0.04) probably_damaging(0.955) TCGA-AA-A01R-01 18 72173141 72173141 G A CNDP2 Missense_Mutation p.D88N 0.38 deleterious(0.05) benign(0.009) TCGA-AA-A01R-01 18 72775188 72775188 G A ZNF407 Silent p.A1837A 0.33 TCGA-AA-A01R-01 18 74153495 74153495 C T ZNF516 Missense_Mutation p.A506T 0.53 tolerated(0.33) benign(0.006) TCGA-AA-A01R-01 18 74155026 74155026 G A ZNF516 5'UTR 0.28 TCGA-AA-A01R-01 18 74592156 74592156 G A ZNF236 Missense_Mutation p.D356N 0.34 deleterious(0) probably_damaging(0.981) TCGA-AA-A01R-01 18 76856576 76856576 C T ATP9B Nonsense_Mutation p.R74* 0.34 TCGA-AA-A01R-01 18 77037137 77037137 G A ATP9B Missense_Mutation p.R451Q 0.34 deleterious(0) probably_damaging(0.994) TCGA-AA-A01R-01 18 77477579 77477579 G A CTDP1 Missense_Mutation p.V705M 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A01R-01 18 77926971 77926971 C T AC139100.2 3'UTR 0.39 TCGA-AA-A01R-01 19 10204056 10204056 G A ANGPTL6 Silent p.S397S 0.28 TCGA-AA-A01R-01 19 1043731 1043731 G A ABCA7 Missense_Mutation p.R313Q 0.24 tolerated(0.5) benign(0.002) TCGA-AA-A01R-01 19 1047604 1047604 C T ABCA7 Silent p.D740D 0.33 TCGA-AA-A01R-01 19 10610687 10610687 C T KEAP1 Missense_Mutation p.S8N 0.38 tolerated_low_confidence(0.1) benign(0.137) TCGA-AA-A01R-01 19 11039497 11039497 G T C19orf52 5'UTR 0.44 TCGA-AA-A01R-01 19 11285332 11285332 G A KANK2 Missense_Mutation p.R637C 0.49 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 19 11347514 11347514 G A DOCK6 Silent p.G705G 0.34 TCGA-AA-A01R-01 19 11446143 11446143 C T RAB3D Missense_Mutation p.R151Q 0.32 tolerated(0.88) benign(0.001) TCGA-AA-A01R-01 19 11559765 11559765 G A PRKCSH Silent p.S434S 0.32 TCGA-AA-A01R-01 19 11624044 11624044 G A ECSIT Missense_Mutation p.R189C 0.28 deleterious(0.01) probably_damaging(0.939) TCGA-AA-A01R-01 19 11796656 11796656 A G ZNF833P RNA 0.22 TCGA-AA-A01R-01 19 11833064 11833064 C T ZNF823 Missense_Mutation p.G429S 0.36 tolerated(1) benign(0.003) TCGA-AA-A01R-01 19 1233549 1233549 A G C19orf26 Silent p.G285G 0.36 TCGA-AA-A01R-01 19 1278990 1278990 G A C19orf24 3'UTR 0.30 TCGA-AA-A01R-01 19 13008224 13008224 G A GCDH Missense_Mutation p.R355H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.631) TCGA-AA-A01R-01 19 13041434 13041434 C T FARSA Missense_Mutation p.E93K 0.17 tolerated(0.18) benign(0.003) TCGA-AA-A01R-01 19 13058787 13058787 C T RAD23A Silent p.I66I 0.28 TCGA-AA-A01R-01 19 13059152 13059152 G A RAD23A Silent p.T132T 0.36 TCGA-AA-A01R-01 19 13216195 13216195 G A TRMT1 Silent p.D573D 0.38 TCGA-AA-A01R-01 19 1369293 1369293 C T MUM1 Silent p.D485D 0.29 TCGA-AA-A01R-01 19 13869999 13869999 G A CCDC130 Silent p.A162A 0.24 TCGA-AA-A01R-01 19 14070072 14070072 G A DCAF15 Missense_Mutation p.A334T 0.36 tolerated(0.05) probably_damaging(0.969) TCGA-AA-A01R-01 19 14073849 14073849 G A RFX1 Silent p.F909F 0.31 TCGA-AA-A01R-01 19 14076457 14076457 G A RFX1 Silent p.D698D 0.28 TCGA-AA-A01R-01 19 14208433 14208433 G A PRKACA Silent p.C200C 0.27 TCGA-AA-A01R-01 19 15065029 15065029 C T SLC1A6 Missense_Mutation p.A428T 0.36 deleterious(0) benign(0.303) TCGA-AA-A01R-01 19 15221487 15221487 G A SYDE1 Missense_Mutation p.G411S 0.29 tolerated(0.91) benign(0.061) TCGA-AA-A01R-01 19 15281154 15281154 G A NOTCH3 Missense_Mutation p.A1701V 0.27 deleterious(0.04) possibly_damaging(0.892) TCGA-AA-A01R-01 19 15285151 15285151 G A NOTCH3 Silent p.C1488C 0.34 TCGA-AA-A01R-01 19 15296398 15296398 G T NOTCH3 Missense_Mutation p.L682I 0.43 tolerated(0.31) benign(0.188) TCGA-AA-A01R-01 19 1555362 1555362 C T MEX3D 3'UTR 0.38 TCGA-AA-A01R-01 19 15651382 15651382 C T CYP4F22 Missense_Mutation p.R265W 0.38 deleterious(0.02) benign(0.017) TCGA-AA-A01R-01 19 16038091 16038091 C T CYP4F11 Silent p.T152T 0.03 TCGA-AA-A01R-01 19 1623996 1623996 G A TCF3 Missense_Mutation p.T168M 0.50 tolerated(0.22) benign(0.433) TCGA-AA-A01R-01 19 16344325 16344325 C T AP1M1 Missense_Mutation p.R369W 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01R-01 19 16435777 16435777 G A KLF2 Missense_Mutation p.A15T 0.34 deleterious(0.01) benign(0.256) TCGA-AA-A01R-01 19 16631603 16631603 G C C19orf44 3'UTR 0.33 TCGA-AA-A01R-01 19 16643469 16643469 C A CHERP Missense_Mutation p.G205V 0.28 deleterious(0.01) possibly_damaging(0.476) TCGA-AA-A01R-01 19 16976445 16976445 C T SIN3B Silent p.P568P 0.39 TCGA-AA-A01R-01 19 17650452 17650452 C G FAM129C Missense_Mutation p.S317C 0.37 deleterious(0) probably_damaging(0.971) TCGA-AA-A01R-01 19 17654145 17654145 C T FAM129C Missense_Mutation p.A481V 0.35 tolerated(0.56) possibly_damaging(0.801) TCGA-AA-A01R-01 19 17670202 17670202 G A COLGALT1 Missense_Mutation p.V115M 0.28 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 19 17881602 17881602 C T FCHO1 Missense_Mutation p.A164V 0.16 deleterious(0.03) benign(0.017) TCGA-AA-A01R-01 19 17895541 17895541 G A FCHO1 Missense_Mutation p.R745H 0.33 deleterious(0.05) benign(0.007) TCGA-AA-A01R-01 19 17945718 17945718 C T JAK3 Silent p.T714T 0.32 TCGA-AA-A01R-01 19 17986774 17986774 C A SLC5A5 Missense_Mutation p.A186D 0.34 deleterious(0) probably_damaging(0.986) TCGA-AA-A01R-01 19 18004703 18004703 G A SLC5A5 3'UTR 0.31 TCGA-AA-A01R-01 19 18092728 18092728 C T KCNN1 Missense_Mutation p.R237C 0.24 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 19 18245670 18245670 G A MAST3 Missense_Mutation p.R554H 0.32 deleterious(0.02) benign(0.097) TCGA-AA-A01R-01 19 1827903 1827903 C T REXO1 Silent p.T295T 0.38 TCGA-AA-A01R-01 19 18561353 18561353 G A ELL Missense_Mutation p.R467W 0.36 deleterious(0.02) benign(0.394) TCGA-AA-A01R-01 19 18860639 18860639 G A CRTC1 Silent p.Q180Q 0.29 TCGA-AA-A01R-01 19 18897428 18897428 C T COMP Missense_Mutation p.V390I 0.36 tolerated(0.15) benign(0.001) TCGA-AA-A01R-01 19 19606651 19606651 C T GATAD2A Missense_Mutation p.A238V 0.37 tolerated(0.49) benign(0.018) TCGA-AA-A01R-01 19 19766732 19766732 G A ATP13A1 Silent p.S408S 0.31 TCGA-AA-A01R-01 19 2043502 2043502 C A MKNK2 Missense_Mutation p.R140M 0.30 deleterious(0.04) probably_damaging(0.976) TCGA-AA-A01R-01 19 20748464 20748464 C T ZNF737 5'UTR 0.34 TCGA-AA-A01R-01 19 2110171 2110171 C T AP3D1 Silent p.A1076A 0.33 TCGA-AA-A01R-01 19 2214622 2214622 G A DOT1L Intron 0.32 TCGA-AA-A01R-01 19 2246936 2246936 C T SF3A2 Missense_Mutation p.A154V 0.38 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-AA-A01R-01 19 2254260 2254260 G T JSRP1 Missense_Mutation p.P63H 0.45 deleterious(0.04) probably_damaging(0.979) TCGA-AA-A01R-01 19 2338839 2338839 C T SPPL2B Intron 0.32 TCGA-AA-A01R-01 19 23542477 23542477 C T ZNF91 Missense_Mutation p.G1102R 0.06 deleterious(0.01) possibly_damaging(0.907) TCGA-AA-A01R-01 19 2763719 2763719 G A SGTA Silent p.G143G 0.44 TCGA-AA-A01R-01 19 2813118 2813118 C T THOP1 Silent p.G638G 0.32 TCGA-AA-A01R-01 19 31767881 31767881 C T TSHZ3 Missense_Mutation p.G940R 0.33 deleterious(0) probably_damaging(0.992) TCGA-AA-A01R-01 19 32971457 32971457 C T DPY19L3 Silent p.N661N 0.27 TCGA-AA-A01R-01 19 33695616 33695616 A G LRP3 Silent p.P111P 0.25 TCGA-AA-A01R-01 19 33892638 33892638 G A PEPD Missense_Mutation p.A319V 0.36 deleterious(0.04) benign(0.025) TCGA-AA-A01R-01 19 34706070 34706070 A G LSM14A Missense_Mutation p.T194A 0.34 tolerated(0.1) benign(0.167) TCGA-AA-A01R-01 19 34887520 34887520 G A GPI Silent p.P420P 0.24 TCGA-AA-A01R-01 19 34891002 34891002 G A GPI 3'UTR 0.38 TCGA-AA-A01R-01 19 34983947 34983947 C T WTIP Nonsense_Mutation p.R259* 0.21 TCGA-AA-A01R-01 19 35434734 35434734 C T ZNF30 Silent p.Y289Y 0.28 TCGA-AA-A01R-01 19 35551318 35551318 G A HPN Nonsense_Mutation p.W174* 0.32 TCGA-AA-A01R-01 19 35657168 35657168 C T FXYD5 Missense_Mutation p.R143W 0.40 tolerated(0.05) probably_damaging(0.996) TCGA-AA-A01R-01 19 36033442 36033442 G A GAPDHS Silent p.P197P 0.27 TCGA-AA-A01R-01 19 36124005 36124005 G A RBM42 Missense_Mutation p.G179S 0.39 deleterious(0.04) benign(0.143) TCGA-AA-A01R-01 19 36322217 36322217 C T NPHS1 Missense_Mutation p.R1123Q 0.33 tolerated(0.49) benign(0.003) TCGA-AA-A01R-01 19 36333319 36333319 G A NPHS1 Missense_Mutation p.A823V 0.29 deleterious(0.05) possibly_damaging(0.809) TCGA-AA-A01R-01 19 36338957 36338957 G A NPHS1 Missense_Mutation p.L476F 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 19 36505140 36505140 G A ALKBH6 5'UTR 0.28 TCGA-AA-A01R-01 19 36573979 36573979 C T WDR62 Silent p.V462V 0.28 TCGA-AA-A01R-01 19 37038163 37038163 C T ZNF529 Missense_Mutation p.V433I 0.28 tolerated(0.39) possibly_damaging(0.875) TCGA-AA-A01R-01 19 3748060 3748060 C T TJP3 Missense_Mutation p.S873L 0.25 tolerated(0.26) benign(0.001) TCGA-AA-A01R-01 19 3779033 3779033 C T MATK Missense_Mutation p.R386Q 0.39 deleterious(0.01) possibly_damaging(0.608) TCGA-AA-A01R-01 19 3779422 3779422 G A MATK Missense_Mutation p.R320W 0.29 deleterious(0) probably_damaging(0.968) TCGA-AA-A01R-01 19 38189846 38189846 T A ZNF607 Missense_Mutation p.N396Y 0.31 deleterious(0.01) possibly_damaging(0.854) TCGA-AA-A01R-01 19 3831779 3831779 C T ZFR2 Silent p.A159A 0.36 TCGA-AA-A01R-01 19 38375481 38375481 A G WDR87 3'Flank 0.55 TCGA-AA-A01R-01 19 38778556 38778556 G A SPINT2 Silent p.A106A 0.30 TCGA-AA-A01R-01 19 38896167 38896167 G A FAM98C Silent p.L214L 0.30 TCGA-AA-A01R-01 19 39037099 39037099 C T RYR1 Silent p.I4009I 0.40 TCGA-AA-A01R-01 19 39096305 39096305 C T MAP4K1 Silent p.P422P 0.27 TCGA-AA-A01R-01 19 39398240 39398240 G A NFKBIB Missense_Mutation p.E304K 0.34 deleterious(0.03) benign(0.011) TCGA-AA-A01R-01 19 39860434 39860434 A G SAMD4B Silent p.S112S 0.18 TCGA-AA-A01R-01 19 39905887 39905887 G A PLEKHG2 Missense_Mutation p.R122H 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A01R-01 19 40006407 40006407 C T SELV Silent p.A185A 0.42 TCGA-AA-A01R-01 19 40398312 40398312 C T FCGBP Missense_Mutation p.A2219T 0.18 possibly_damaging(0.798) TCGA-AA-A01R-01 19 40433368 40433368 G A FCGBP Missense_Mutation p.P301S 0.56 benign(0.027) TCGA-AA-A01R-01 19 40740933 40740933 G A AKT2 Intron 0.43 TCGA-AA-A01R-01 19 40741244 40741244 G A AKT2 Missense_Mutation p.P397S 0.32 tolerated(0.16) benign(0.009) TCGA-AA-A01R-01 19 40947494 40947494 C A SERTAD3 Missense_Mutation p.R165L 0.36 tolerated(0.51) benign(0) TCGA-AA-A01R-01 19 40964428 40964428 C A BLVRB Missense_Mutation p.R35L 0.39 deleterious(0) probably_damaging(0.936) TCGA-AA-A01R-01 19 40995993 40995993 G A SPTBN4 Silent p.T111T 0.31 TCGA-AA-A01R-01 19 41245499 41245499 G A ITPKC 3'UTR 0.19 TCGA-AA-A01R-01 19 41255557 41255557 G T C19orf54 Missense_Mutation p.P51H 0.35 tolerated_low_confidence(0.09) unknown(0) TCGA-AA-A01R-01 19 41255675 41255675 G A C19orf54 Missense_Mutation p.P12S 0.31 tolerated_low_confidence(0.1) unknown(0) TCGA-AA-A01R-01 19 41454991 41454991 G A AC092071.1 3'Flank 0.29 TCGA-AA-A01R-01 19 41774165 41774165 C T HNRNPUL1 Silent p.Y111Y 0.35 TCGA-AA-A01R-01 19 41860774 41860774 C T B9D2 Missense_Mutation p.R120Q 0.34 tolerated(0.35) benign(0.003) TCGA-AA-A01R-01 19 41931575 41931575 C T B3GNT8 Missense_Mutation p.R370H 0.28 deleterious(0.03) possibly_damaging(0.611) TCGA-AA-A01R-01 19 42752782 42752782 G A ERF Silent p.L494L 0.22 TCGA-AA-A01R-01 19 42793060 42793060 G A CIC Missense_Mutation p.V318I 0.43 benign(0.017) TCGA-AA-A01R-01 19 42856465 42856465 C T MEGF8 Silent p.Y1002Y 0.26 TCGA-AA-A01R-01 19 4366964 4366964 C T SH3GL1 Missense_Mutation p.E25K 0.32 tolerated(0.15) possibly_damaging(0.827) TCGA-AA-A01R-01 19 43910554 43910554 G T TEX101 5'UTR 0.36 TCGA-AA-A01R-01 19 44127515 44127515 G A CADM4 Silent p.D378D 0.41 TCGA-AA-A01R-01 19 44152987 44152987 G T PLAUR 3'UTR 0.35 TCGA-AA-A01R-01 19 44251908 44251908 C T SMG9 Missense_Mutation p.A123T 0.36 tolerated(0.47) benign(0.002) TCGA-AA-A01R-01 19 4428824 4428824 G A CHAF1A Missense_Mutation p.G514D 0.08 tolerated(0.16) benign(0.143) TCGA-AA-A01R-01 19 44559325 44559325 G A ZNF223 5'UTR 0.32 TCGA-AA-A01R-01 19 44740580 44740580 G A ZNF227 Missense_Mutation p.G666E 0.36 deleterious(0.02) probably_damaging(1) TCGA-AA-A01R-01 19 45381667 45381667 G A PVRL2 Intron 0.22 TCGA-AA-A01R-01 19 45385556 45385556 G A PVRL2 Silent p.T377T 0.37 TCGA-AA-A01R-01 19 45716536 45716536 G A EXOC3L2 Missense_Mutation p.R341W 0.27 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 19 45810118 45810118 C T CKM Missense_Mutation p.E346K 0.26 deleterious(0) possibly_damaging(0.903) TCGA-AA-A01R-01 19 45926585 45926585 C T ERCC1 Silent p.P16P 0.30 TCGA-AA-A01R-01 19 46289367 46289367 G T DMWD Missense_Mutation p.P463T 0.28 tolerated(1) possibly_damaging(0.908) TCGA-AA-A01R-01 19 46444134 46444134 C T NOVA2 Missense_Mutation p.V156M 0.37 deleterious(0.01) unknown(0) TCGA-AA-A01R-01 19 46519603 46519603 C T CCDC61 Missense_Mutation p.T348M 0.14 deleterious(0) probably_damaging(0.968) TCGA-AA-A01R-01 19 46973568 46973568 C T PNMAL1 Missense_Mutation p.R242K 0.31 tolerated(0.08) benign(0.14) TCGA-AA-A01R-01 19 46998695 46998695 A C PNMAL2 Missense_Mutation p.C10G 0.26 deleterious(0) benign(0.378) TCGA-AA-A01R-01 19 4704161 4704161 G A DPP9 Silent p.G194G 0.48 TCGA-AA-A01R-01 19 47542319 47542319 C T NPAS1 Silent p.P238P 0.32 TCGA-AA-A01R-01 19 47712419 47712419 C T SAE1 Silent p.L318L 0.40 TCGA-AA-A01R-01 19 47941204 47941204 C T SLC8A2 Missense_Mutation p.E638K 0.31 tolerated(0.33) benign(0.119) TCGA-AA-A01R-01 19 48204990 48204990 C T GLTSCR1 Missense_Mutation p.P1334L 0.38 benign(0.345) TCGA-AA-A01R-01 19 48248827 48248827 G A GLTSCR2 Missense_Mutation p.G4E 0.30 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-AA-A01R-01 19 48260365 48260365 C T GLTSCR2 3'Flank 0.32 TCGA-AA-A01R-01 19 4852178 4852178 C T PLIN3 Missense_Mutation p.V162M 0.25 tolerated(0.17) benign(0.217) TCGA-AA-A01R-01 19 48956135 48956135 C T GRWD1 Silent p.P398P 0.36 TCGA-AA-A01R-01 19 49104398 49104398 C G FAM83E Missense_Mutation p.A469P 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.548) TCGA-AA-A01R-01 19 49247795 49247795 G A IZUMO1 Silent p.G104G 0.29 TCGA-AA-A01R-01 19 49303323 49303323 C T BCAT2 Missense_Mutation p.R149H 0.35 tolerated(0.06) possibly_damaging(0.804) TCGA-AA-A01R-01 19 49967724 49967724 C T ALDH16A1 Missense_Mutation p.S461L 0.39 deleterious(0) benign(0.042) TCGA-AA-A01R-01 19 50046559 50046559 G A RCN3 3'UTR 0.50 TCGA-AA-A01R-01 19 50100983 50100983 C T PRR12 Missense_Mutation p.R1131C 0.34 probably_damaging(0.947) TCGA-AA-A01R-01 19 50285221 50285221 G T AP2A1 Missense_Mutation p.G52C 0.33 deleterious(0) probably_damaging(0.994) TCGA-AA-A01R-01 19 50364896 50364896 G A PNKP Missense_Mutation p.A452V 0.46 tolerated(0.17) possibly_damaging(0.58) TCGA-AA-A01R-01 19 50381442 50381442 A G TBC1D17 Missense_Mutation p.K22E 0.34 tolerated(0.75) possibly_damaging(0.549) TCGA-AA-A01R-01 19 50412397 50412397 G T NUP62 Missense_Mutation p.A223E 0.28 deleterious(0.01) possibly_damaging(0.67) TCGA-AA-A01R-01 19 50434211 50434211 C - ATF5 Frame_Shift_Del p.L37Wfs*31 0.21 TCGA-AA-A01R-01 19 50775819 50775819 C T MYH14 Missense_Mutation p.R1100C 0.34 deleterious(0) probably_damaging(0.99) TCGA-AA-A01R-01 19 50781488 50781488 G A MYH14 Missense_Mutation p.R1325Q 0.33 tolerated(0.06) benign(0.387) TCGA-AA-A01R-01 19 50813055 50813055 C A MYH14 3'UTR 0.27 TCGA-AA-A01R-01 19 50939080 50939080 G A MYBPC2 Missense_Mutation p.V53I 0.26 tolerated(0.21) benign(0.002) TCGA-AA-A01R-01 19 50946767 50946767 G A MYBPC2 Missense_Mutation p.V307I 0.36 tolerated(0.28) benign(0.229) TCGA-AA-A01R-01 19 51017832 51017832 C T ASPDH 5'Flank 0.36 TCGA-AA-A01R-01 19 51273896 51273896 C T GPR32 Silent p.D13D 0.28 TCGA-AA-A01R-01 19 51525880 51525880 G A KLK11 Missense_Mutation p.A257V 0.34 deleterious(0.02) probably_damaging(0.987) TCGA-AA-A01R-01 19 52148736 52148736 C A SIGLEC14 Missense_Mutation p.G250C 0.06 tolerated(0.06) benign(0.014) TCGA-AA-A01R-01 19 52327714 52327714 G A FPR3 Missense_Mutation p.R238H 0.36 tolerated(0.11) benign(0.258) TCGA-AA-A01R-01 19 52715982 52715982 C T PPP2R1A Missense_Mutation p.R183W 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 19 52942311 52942311 G A ZNF534 Missense_Mutation p.R546Q 0.30 tolerated(1) benign(0.01) TCGA-AA-A01R-01 19 53057130 53057130 G T ZNF808 Missense_Mutation p.G321C 0.34 deleterious(0) probably_damaging(0.981) TCGA-AA-A01R-01 19 53611927 53611927 G A ZNF415 Silent p.T457T 0.35 TCGA-AA-A01R-01 19 53959586 53959586 A G ZNF761 RNA 0.31 TCGA-AA-A01R-01 19 54139966 54139966 C T DPRX Silent p.G100G 0.08 TCGA-AA-A01R-01 19 54401762 54401762 C T PRKCG Silent p.I387I 0.37 TCGA-AA-A01R-01 19 54611507 54611507 C T TFPT Silent p.A156A 0.26 TCGA-AA-A01R-01 19 54659487 54659487 C T LENG1 Missense_Mutation p.R256H 0.36 deleterious(0.01) possibly_damaging(0.832) TCGA-AA-A01R-01 19 54782801 54782801 G A LILRB2 Missense_Mutation p.A274V 0.34 deleterious(0.03) possibly_damaging(0.633) TCGA-AA-A01R-01 19 55329874 55329874 A G KIR3DL1 Missense_Mutation p.M59V 0.38 tolerated(0.13) benign(0.079) TCGA-AA-A01R-01 19 55451568 55451568 C T NLRP7 Missense_Mutation p.A207T 0.38 deleterious(0.04) possibly_damaging(0.899) TCGA-AA-A01R-01 19 55496562 55496562 C T NLRP2 Silent p.D726D 0.39 TCGA-AA-A01R-01 19 55593477 55593477 C T EPS8L1 Missense_Mutation p.R307W 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 19 55670727 55670727 G A DNAAF3 Silent p.T510T 0.33 TCGA-AA-A01R-01 19 55748152 55748152 C T PPP6R1 Missense_Mutation p.R616H 0.35 tolerated(0.16) probably_damaging(0.912) TCGA-AA-A01R-01 19 56103914 56103914 C A FIZ1 Missense_Mutation p.G465C 0.38 deleterious(0.01) probably_damaging(0.958) TCGA-AA-A01R-01 19 56104131 56104131 G A FIZ1 Silent p.A392A 0.58 TCGA-AA-A01R-01 19 56220323 56220323 T C NLRP9 Silent p.G977G 0.37 TCGA-AA-A01R-01 19 56274176 56274176 G A RFPL4A Missense_Mutation p.V167M 0.14 deleterious(0) probably_damaging(0.953) TCGA-AA-A01R-01 19 56379186 56379186 C T NLRP4 Silent p.G766G 0.36 TCGA-AA-A01R-01 19 56538996 56538996 A G NLRP5 Missense_Mutation p.D466G 0.34 deleterious(0.01) possibly_damaging(0.835) TCGA-AA-A01R-01 19 56952755 56952755 T G ZNF667 Missense_Mutation p.S537R 0.33 tolerated(0.1) probably_damaging(0.999) TCGA-AA-A01R-01 19 5745965 5745965 C T CATSPERD Silent p.F233F 0.32 TCGA-AA-A01R-01 19 57646264 57646264 T - ZIM3 3'UTR 0.28 TCGA-AA-A01R-01 19 57840177 57840177 A C ZNF543 Missense_Mutation p.K449N 0.26 deleterious(0) probably_damaging(0.986) TCGA-AA-A01R-01 19 5785772 5785772 C T DUS3L Silent p.T531T 0.35 TCGA-AA-A01R-01 19 5787321 5787321 G A DUS3L Missense_Mutation p.R422C 0.32 deleterious(0) benign(0.325) TCGA-AA-A01R-01 19 57966866 57966866 G A VN1R1 Missense_Mutation p.T330I 0.34 tolerated(0.09) benign(0.348) TCGA-AA-A01R-01 19 58018494 58018494 C A ZNF773 Missense_Mutation p.S344Y 0.32 deleterious(0) probably_damaging(0.979) TCGA-AA-A01R-01 19 5867076 5867076 G A FUT5 Missense_Mutation p.R221C 0.31 deleterious(0) possibly_damaging(0.761) TCGA-AA-A01R-01 19 59023094 59023094 G A SLC27A5 Missense_Mutation p.P77S 0.35 deleterious(0.02) possibly_damaging(0.71) TCGA-AA-A01R-01 19 59067448 59067448 C T UBE2M 3'UTR 0.22 TCGA-AA-A01R-01 19 6004288 6004288 C T RFX2 Missense_Mutation p.R475H 0.28 deleterious(0) probably_damaging(0.987) TCGA-AA-A01R-01 19 6040050 6040050 C T RFX2 Missense_Mutation p.G155R 0.25 deleterious(0) probably_damaging(0.935) TCGA-AA-A01R-01 19 620030 620030 G A POLRMT Silent p.S938S 0.48 TCGA-AA-A01R-01 19 620447 620447 G A POLRMT Missense_Mutation p.T894M 0.35 deleterious(0.01) probably_damaging(0.954) TCGA-AA-A01R-01 19 6413995 6413995 G A KHSRP 3'UTR 0.30 TCGA-AA-A01R-01 19 6495277 6495277 G A TUBB4A Silent p.A411A 0.27 TCGA-AA-A01R-01 19 6751350 6751350 T C TRIP10 3'UTR 0.36 TCGA-AA-A01R-01 19 6760878 6760878 G A SH2D3A Missense_Mutation p.R64C 0.34 deleterious(0.03) benign(0.027) TCGA-AA-A01R-01 19 6822293 6822293 G A VAV1 Missense_Mutation p.D171N 0.31 tolerated(0.07) benign(0.171) TCGA-AA-A01R-01 19 7267488 7267488 A G INSR Silent p.L174L 0.31 TCGA-AA-A01R-01 19 7509252 7509252 G A ARHGEF18 Missense_Mutation p.R320Q 0.52 tolerated(0.22) benign(0.318) TCGA-AA-A01R-01 19 7547000 7547000 C T PEX11G Missense_Mutation p.R116Q 0.37 tolerated(0.15) benign(0.007) TCGA-AA-A01R-01 19 7928526 7928526 G T EVI5L Missense_Mutation p.G786C 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A01R-01 19 808413 808413 G A PTBP1 Missense_Mutation p.A403T 0.31 deleterious(0) possibly_damaging(0.652) TCGA-AA-A01R-01 19 8131068 8131068 C A FBN3 Missense_Mutation p.R2722L 0.29 deleterious(0.01) benign(0.168) TCGA-AA-A01R-01 19 8616651 8616651 G A MYO1F Silent p.D248D 0.25 TCGA-AA-A01R-01 19 861738 861738 C A CFD Missense_Mutation p.L133M 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A01R-01 19 877125 877125 G A MED16 Missense_Mutation p.A470V 0.39 deleterious(0.03) benign(0.306) TCGA-AA-A01R-01 19 8933377 8933377 G A ZNF558 5'UTR 0.31 TCGA-AA-A01R-01 19 9017354 9017354 T C MUC16 Missense_Mutation p.Y12657C 0.30 probably_damaging(0.944) TCGA-AA-A01R-01 19 9204345 9204345 G A OR1M1 Missense_Mutation p.R142H 0.21 tolerated(0.54) benign(0.007) TCGA-AA-A01R-01 19 920806 920806 G A KISS1R 3'UTR 0.25 TCGA-AA-A01R-01 1 100154472 100154472 C T PALMD Missense_Mutation p.A219V 0.31 deleterious(0) probably_damaging(0.957) TCGA-AA-A01R-01 1 101343115 101343115 T C EXTL2 Missense_Mutation p.H117R 0.34 tolerated(0.21) probably_damaging(0.984) TCGA-AA-A01R-01 1 1026914 1026914 G A C1orf159 Missense_Mutation p.R4W 0.42 deleterious(0.01) benign(0.365) TCGA-AA-A01R-01 1 104113208 104113208 C T AMY2B Intron 0.36 TCGA-AA-A01R-01 1 10699967 10699967 C T CASZ1 Missense_Mutation p.D1438N 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A01R-01 1 107600334 107600334 C T PRMT6 Nonsense_Mutation p.Q333* 0.32 TCGA-AA-A01R-01 1 107601084 107601084 T C PRMT6 3'UTR 0.39 TCGA-AA-A01R-01 1 108507337 108507337 G A VAV3 Missense_Mutation p.A52V 0.26 deleterious(0) benign(0.006) TCGA-AA-A01R-01 1 109607295 109607295 A G TAF13 Silent p.I75I 0.35 TCGA-AA-A01R-01 1 109870189 109870189 G A SORT1 Missense_Mutation p.S469F 0.40 tolerated(0.13) benign(0.106) TCGA-AA-A01R-01 1 110051166 110051166 A G AMIGO1 Silent p.R123R 0.36 TCGA-AA-A01R-01 1 11007855 11007855 G A C1orf127 Silent p.Y779Y 0.32 TCGA-AA-A01R-01 1 110173837 110173837 G A AMPD2 3'UTR 0.09 TCGA-AA-A01R-01 1 110582021 110582021 G A STRIP1 Silent p.T155T 0.32 TCGA-AA-A01R-01 1 11116779 11116779 G A SRM Silent p.G139G 0.25 TCGA-AA-A01R-01 1 111435051 111435051 C A CD53 Missense_Mutation p.L50I 0.27 deleterious(0.01) possibly_damaging(0.781) TCGA-AA-A01R-01 1 111490863 111490863 T C LRIF1 Silent p.S676S 0.28 TCGA-AA-A01R-01 1 111660804 111660804 C T DRAM2 Missense_Mutation p.R260Q 0.30 tolerated(0.61) benign(0.001) TCGA-AA-A01R-01 1 111825610 111825610 G A CHIAP2 RNA 0.31 TCGA-AA-A01R-01 1 1118413 1118413 G A TTLL10 Silent p.A358A 0.41 TCGA-AA-A01R-01 1 113232693 113232693 G A MOV10 Missense_Mutation p.R270Q 0.27 tolerated(0.42) benign(0.002) TCGA-AA-A01R-01 1 113471890 113471890 G - SLC16A1 Frame_Shift_Del p.P14Qfs*10 0.27 TCGA-AA-A01R-01 1 115166211 115166211 G A DENND2C Missense_Mutation p.T287M 0.26 tolerated(0.08) benign(0.146) TCGA-AA-A01R-01 1 115268950 115268950 G A CSDE1 Nonsense_Mutation p.R554* 0.36 TCGA-AA-A01R-01 1 11561078 11561078 A G PTCHD2 Missense_Mutation p.Q10R 0.31 deleterious_low_confidence(0.04) probably_damaging(0.978) TCGA-AA-A01R-01 1 116936293 116936293 C T ATP1A1 Silent p.D536D 0.26 TCGA-AA-A01R-01 1 1169574 1169574 C T B3GALT6 3'UTR 0.35 TCGA-AA-A01R-01 1 117487548 117487548 C T PTGFRN Silent p.L222L 0.38 TCGA-AA-A01R-01 1 117618193 117618193 G A TTF2 Silent p.A329A 0.35 TCGA-AA-A01R-01 1 117618265 117618265 C T TTF2 Silent p.D353D 0.45 TCGA-AA-A01R-01 1 118168242 118168242 T C FAM46C 3'UTR 0.28 TCGA-AA-A01R-01 1 118168911 118168911 T - FAM46C 3'UTR 0.22 TCGA-AA-A01R-01 1 118420757 118420757 A - GDAP2 Frame_Shift_Del p.F440Lfs*9 0.20 TCGA-AA-A01R-01 1 11855293 11855293 C T MTHFR Missense_Mutation p.G298D 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 119474345 119474345 C T TBX15 5'UTR 0.34 TCGA-AA-A01R-01 1 12067173 12067173 G A MFN2 Missense_Mutation p.V646I 0.31 tolerated(0.06) benign(0.041) TCGA-AA-A01R-01 1 120935907 120935907 C T FCGR1B 5'UTR 0.29 TCGA-AA-A01R-01 1 12337745 12337745 C T VPS13D Missense_Mutation p.S1367L 0.35 benign(0.011) TCGA-AA-A01R-01 1 12418603 12418603 C T VPS13D Nonsense_Mutation p.R3363* 0.27 TCGA-AA-A01R-01 1 12520351 12520351 G T VPS13D Missense_Mutation p.G4188W 0.30 probably_damaging(0.996) TCGA-AA-A01R-01 1 1271825 1271825 C T DVL1 Silent p.A570A 0.33 TCGA-AA-A01R-01 1 1275637 1275637 C T DVL1 Silent p.T253T 0.25 TCGA-AA-A01R-01 1 13503 13503 C T DDX11L1 RNA 0.10 TCGA-AA-A01R-01 1 13669060 13669060 G A PRAMEF14 Missense_Mutation p.R424C 0.25 tolerated(0.19) benign(0.443) TCGA-AA-A01R-01 1 14142933 14142933 G A PRDM2 Missense_Mutation p.R1683H 0.34 unknown(0) TCGA-AA-A01R-01 1 145075692 145075692 G A PDE4DIP Silent p.A57A 0.08 TCGA-AA-A01R-01 1 145763570 145763570 G A PDZK1 Missense_Mutation p.A503T 0.31 tolerated(0.08) benign(0.04) TCGA-AA-A01R-01 1 147091373 147091373 C T BCL9 Missense_Mutation p.A471V 0.35 tolerated(0.09) probably_damaging(0.972) TCGA-AA-A01R-01 1 148591317 148591317 G A NBPF15 Missense_Mutation p.S461N 0.21 tolerated(0.37) benign(0.441) TCGA-AA-A01R-01 1 149903217 149903217 G A MTMR11 Nonsense_Mutation p.R409* 0.34 TCGA-AA-A01R-01 1 150416763 150416763 C T RPRD2 Missense_Mutation p.R202C 0.47 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-AA-A01R-01 1 150445877 150445877 T C RPRD2 3'UTR 0.55 TCGA-AA-A01R-01 1 151011326 151011326 G A BNIPL Missense_Mutation p.R86H 0.31 deleterious(0) probably_damaging(0.985) TCGA-AA-A01R-01 1 151027510 151027510 G A CDC42SE1 Silent p.A49A 0.32 TCGA-AA-A01R-01 1 151108068 151108068 G A SEMA6C Missense_Mutation p.R478W 0.30 deleterious(0) possibly_damaging(0.835) TCGA-AA-A01R-01 1 151139899 151139899 C T SCNM1 Intron 0.30 TCGA-AA-A01R-01 1 151400826 151400826 G T POGZ Missense_Mutation p.P211H 0.29 tolerated(0.08) benign(0.418) TCGA-AA-A01R-01 1 151497303 151497303 C T CGN Missense_Mutation p.R519W 0.33 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 1 152192058 152192058 C T HRNR Missense_Mutation p.G683S 0.34 unknown(0) TCGA-AA-A01R-01 1 152277643 152277643 C T FLG Missense_Mutation p.R3240H 0.31 unknown(0) TCGA-AA-A01R-01 1 152285900 152285900 T C FLG Missense_Mutation p.S488G 0.30 benign(0.034) TCGA-AA-A01R-01 1 153122266 153122266 C T SPRR2G 3'UTR 0.25 TCGA-AA-A01R-01 1 153313047 153313047 C T PGLYRP4 Missense_Mutation p.G212S 0.32 tolerated(0.94) benign(0.002) TCGA-AA-A01R-01 1 153507086 153507086 A - S100A6 3'UTR 0.50 TCGA-AA-A01R-01 1 153662433 153662433 G A NPR1 Missense_Mutation p.R970H 0.38 deleterious(0.03) possibly_damaging(0.838) TCGA-AA-A01R-01 1 153912692 153912692 G A DENND4B Missense_Mutation p.R515C 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 1 153923813 153923813 C T CRTC2 Missense_Mutation p.D443N 0.32 tolerated(0.14) benign(0.008) TCGA-AA-A01R-01 1 153924004 153924004 C T CRTC2 Missense_Mutation p.R379H 0.28 tolerated(0.62) benign(0.001) TCGA-AA-A01R-01 1 154233433 154233433 C G UBAP2L Missense_Mutation p.P882A 0.33 tolerated(0.16) possibly_damaging(0.824) TCGA-AA-A01R-01 1 154245954 154245954 A G HAX1 Missense_Mutation p.S66G 0.31 tolerated(0.13) benign(0.001) TCGA-AA-A01R-01 1 15441059 15441059 C T KAZN Silent p.D752D 0.31 TCGA-AA-A01R-01 1 154744848 154744848 C T KCNN3 Missense_Mutation p.A351T 0.37 deleterious(0.01) possibly_damaging(0.767) TCGA-AA-A01R-01 1 154960995 154960995 C T FLAD1 Missense_Mutation p.R263W 0.44 deleterious(0.01) probably_damaging(0.953) TCGA-AA-A01R-01 1 155003009 155003009 C A DCST2 Missense_Mutation p.M306I 0.30 tolerated(0.07) benign(0.007) TCGA-AA-A01R-01 1 155228742 155228742 C T SCAMP3 Missense_Mutation p.R131Q 0.04 tolerated(0.07) benign(0.27) TCGA-AA-A01R-01 1 155230400 155230400 T C SCAMP3 Silent p.S65S 0.35 TCGA-AA-A01R-01 1 155308161 155308161 C T ASH1L Missense_Mutation p.R2841H 0.34 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-AA-A01R-01 1 156046345 156046345 G A MEX3A 3'UTR 0.41 TCGA-AA-A01R-01 1 156517944 156517944 C T IQGAP3 Missense_Mutation p.R742H 0.31 deleterious(0.01) probably_damaging(1) TCGA-AA-A01R-01 1 156552053 156552053 A G TTC24 Missense_Mutation p.Y246C 0.31 deleterious(0) probably_damaging(0.985) TCGA-AA-A01R-01 1 156555793 156555793 G A TTC24 Silent p.A541A 0.34 TCGA-AA-A01R-01 1 15671999 15671999 C T RP3-467K16.2 5'Flank 0.27 TCGA-AA-A01R-01 1 156897411 156897411 C A LRRC71 Missense_Mutation p.N262K 0.30 deleterious(0) probably_damaging(0.971) TCGA-AA-A01R-01 1 157556159 157556159 C T FCRL4 Missense_Mutation p.V312M 0.50 tolerated(0.06) benign(0.286) TCGA-AA-A01R-01 1 157557187 157557187 C T FCRL4 Silent p.T242T 0.45 TCGA-AA-A01R-01 1 158259914 158259914 C T CD1C Silent p.D20D 0.27 TCGA-AA-A01R-01 1 159888674 159888674 G A TAGLN2 Silent p.N172N 0.25 TCGA-AA-A01R-01 1 16060397 16060397 C T PLEKHM2 Missense_Mutation p.R1010C 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A01R-01 1 16064627 16064627 G T SLC25A34 Missense_Mutation p.G162W 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 160654942 160654942 G A CD48 Silent p.N40N 0.53 TCGA-AA-A01R-01 1 160851800 160851800 C T ITLN1 Missense_Mutation p.A118T 0.24 tolerated(0.06) probably_damaging(0.933) TCGA-AA-A01R-01 1 161134865 161134865 C T USP21 Silent p.S513S 0.46 TCGA-AA-A01R-01 1 161143483 161143483 C A B4GALT3 Missense_Mutation p.A239S 0.21 tolerated(0.1) probably_damaging(1) TCGA-AA-A01R-01 1 161953499 161953499 T C OLFML2B Missense_Mutation p.H740R 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 162469795 162469795 C T UHMK1 Missense_Mutation p.R107C 0.25 deleterious(0.01) possibly_damaging(0.828) TCGA-AA-A01R-01 1 16270535 16270535 C A ZBTB17 Intron 0.44 TCGA-AA-A01R-01 1 165513742 165513742 C T LRRC52 Missense_Mutation p.A70V 0.56 deleterious(0.02) benign(0.41) TCGA-AA-A01R-01 1 16577872 16577872 C G FBXO42 Missense_Mutation p.A483P 0.32 deleterious_low_confidence(0.02) benign(0.084) TCGA-AA-A01R-01 1 16721675 16721675 G A SZRD1 3'UTR 0.34 TCGA-AA-A01R-01 1 167407839 167407839 G A CD247 Missense_Mutation p.R90C 0.45 deleterious(0.01) possibly_damaging(0.639) TCGA-AA-A01R-01 1 167734960 167734960 C T MPZL1 Missense_Mutation p.P78S 0.54 tolerated(0.27) benign(0.314) TCGA-AA-A01R-01 1 16782333 16782333 C T NECAP2 Intron 0.37 TCGA-AA-A01R-01 1 168074035 168074035 C A GPR161 Missense_Mutation p.E38D 0.22 tolerated(0.66) benign(0.001) TCGA-AA-A01R-01 1 17023191 17023191 T C ESPNP Splice_Site 0.11 TCGA-AA-A01R-01 1 170967486 170967486 A T MROH9 Intron 0.24 TCGA-AA-A01R-01 1 171505242 171505242 G A PRRC2C Silent p.P704P 0.50 TCGA-AA-A01R-01 1 171753313 171753313 C T METTL13 Missense_Mutation p.A196V 0.22 tolerated(0.1) benign(0.017) TCGA-AA-A01R-01 1 17350484 17350484 G T SDHB Missense_Mutation p.P209H 0.25 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 1 174769577 174769577 C T RABGAP1L Intron 0.25 TCGA-AA-A01R-01 1 175299238 175299238 G A TNR Silent p.L1255L 0.23 TCGA-AA-A01R-01 1 178846706 178846706 A G RALGPS2 Silent p.Q227Q 0.50 TCGA-AA-A01R-01 1 179090856 179090856 G A ABL2 Silent p.H278H 0.24 TCGA-AA-A01R-01 1 17991088 17991088 C T ARHGEF10L Nonsense_Mutation p.Q1003* 0.32 TCGA-AA-A01R-01 1 180794315 180794315 C T XPR1 Silent p.L323L 0.26 TCGA-AA-A01R-01 1 18149503 18149503 C A ACTL8 5'UTR 0.33 TCGA-AA-A01R-01 1 181741277 181741277 C T CACNA1E Silent p.T1683T 0.25 TCGA-AA-A01R-01 1 181764120 181764120 C T CACNA1E Missense_Mutation p.R2050C 0.23 deleterious(0) probably_damaging(0.919) TCGA-AA-A01R-01 1 182443545 182443545 C T RGSL1 Silent p.C433C 0.48 TCGA-AA-A01R-01 1 182569455 182569455 C T RGS16 Missense_Mutation p.C194Y 0.41 tolerated_low_confidence(0.88) benign(0.087) TCGA-AA-A01R-01 1 183867013 183867013 G C RGL1 Silent p.L439L 0.22 TCGA-AA-A01R-01 1 186330029 186330029 C A TPR Missense_Mutation p.A323S 0.25 benign(0.364) TCGA-AA-A01R-01 1 186916028 186916028 T C PLA2G4A Missense_Mutation p.L400S 0.23 tolerated(0.09) probably_damaging(0.997) TCGA-AA-A01R-01 1 18809556 18809556 G A KLHDC7A Missense_Mutation p.R694H 0.28 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 193104564 193104564 T C CDC73 Silent p.G117G 0.19 TCGA-AA-A01R-01 1 19665986 19665986 C T CAPZB 3'UTR 0.37 TCGA-AA-A01R-01 1 196706042 196706042 A G CFH Silent p.K834K 0.18 TCGA-AA-A01R-01 1 197071585 197071585 C T ASPM Missense_Mutation p.A2266T 0.46 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 197411383 197411383 C T CRB1 Silent p.L1322L 0.22 TCGA-AA-A01R-01 1 200080383 200080383 C T NR5A2 Silent p.L388L 0.19 TCGA-AA-A01R-01 1 20008956 20008956 G A TMCO4 3'UTR 0.32 TCGA-AA-A01R-01 1 203677064 203677064 C T ATP2B4 Silent p.C463C 0.23 TCGA-AA-A01R-01 1 204103735 204103735 G T ETNK2 Intron 0.27 TCGA-AA-A01R-01 1 20411359 20411359 T G PLA2G5 Silent p.A12A 0.37 TCGA-AA-A01R-01 1 204416639 204416639 C T PIK3C2B Missense_Mutation p.R805H 0.21 tolerated(0.32) benign(0.256) TCGA-AA-A01R-01 1 204923461 204923461 C T NFASC Missense_Mutation p.R121C 0.29 deleterious(0) probably_damaging(0.979) TCGA-AA-A01R-01 1 205797787 205797787 G A PM20D1 Silent p.D490D 0.15 TCGA-AA-A01R-01 1 206145541 206145541 C A FAM72A Missense_Mutation p.S106R 0.08 deleterious(0.01) probably_damaging(0.979) TCGA-AA-A01R-01 1 206225273 206225273 G A AVPR1B Missense_Mutation p.R278Q 0.51 deleterious(0.02) benign(0.43) TCGA-AA-A01R-01 1 206611440 206611440 C A SRGAP2 Missense_Mutation p.A501D 0.29 deleterious(0.05) benign(0.041) TCGA-AA-A01R-01 1 206647748 206647748 G T IKBKE Missense_Mutation p.R54S 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 1 206648328 206648328 C T IKBKE Missense_Mutation p.R117C 0.22 deleterious(0.03) probably_damaging(0.932) TCGA-AA-A01R-01 1 20678579 20678579 C T VWA5B1 Nonsense_Mutation p.R1024* 0.31 TCGA-AA-A01R-01 1 206822071 206822071 C T DYRK3 Missense_Mutation p.R510C 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 207642150 207642150 C T CR2 Missense_Mutation p.R214C 0.48 deleterious(0) possibly_damaging(0.594) TCGA-AA-A01R-01 1 208212318 208212318 G A PLXNA2 Silent p.C1504C 0.23 TCGA-AA-A01R-01 1 21071441 21071441 G A HP1BP3 Missense_Mutation p.T504M 0.25 deleterious_low_confidence(0) benign(0.219) TCGA-AA-A01R-01 1 210761368 210761368 G A HHAT Silent p.A391A 0.18 TCGA-AA-A01R-01 1 21102316 21102316 T C HP1BP3 Intron 0.28 TCGA-AA-A01R-01 1 211192388 211192388 C T KCNH1 Missense_Mutation p.V257M 0.53 deleterious(0) probably_damaging(0.993) TCGA-AA-A01R-01 1 211652576 211652576 C T RD3 Silent p.K130K 0.24 TCGA-AA-A01R-01 1 212151747 212151747 C T INTS7 Missense_Mutation p.R446Q 0.24 tolerated(0.38) benign(0.017) TCGA-AA-A01R-01 1 214567075 214567075 G A PTPN14 Nonsense_Mutation p.R298* 0.48 TCGA-AA-A01R-01 1 215972340 215972340 G A USH2A Silent p.G3289G 0.27 TCGA-AA-A01R-01 1 220702137 220702137 C A MARK1 5'UTR 0.28 TCGA-AA-A01R-01 1 225211627 225211627 C T DNAH14 3'UTR 0.43 TCGA-AA-A01R-01 1 225600291 225600291 C T LBR Missense_Mutation p.V317I 0.22 tolerated(0.7) benign(0.013) TCGA-AA-A01R-01 1 226034785 226034785 G A TMEM63A Nonsense_Mutation p.Q794* 0.51 TCGA-AA-A01R-01 1 226453982 226453982 G A LIN9 Missense_Mutation p.R306W 0.26 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 1 226564978 226564978 C T PARP1 Missense_Mutation p.R591H 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 227333286 227333286 A G CDC42BPA Silent p.D349D 0.24 TCGA-AA-A01R-01 1 227921399 227921399 G A SNAP47 5'Flank 0.17 TCGA-AA-A01R-01 1 228033921 228033921 C T PRSS38 3'UTR 0.20 TCGA-AA-A01R-01 1 228285837 228285837 G A ARF1 3'UTR 0.15 TCGA-AA-A01R-01 1 229567638 229567638 C T ACTA1 Missense_Mutation p.A274T 0.50 tolerated_low_confidence(0.27) probably_damaging(0.931) TCGA-AA-A01R-01 1 229600595 229600595 G A NUP133 Missense_Mutation p.T776M 0.22 tolerated(0.1) probably_damaging(0.996) TCGA-AA-A01R-01 1 231090108 231090108 C T TTC13 Missense_Mutation p.A162T 0.24 deleterious(0) benign(0.021) TCGA-AA-A01R-01 1 231298739 231298739 C T TRIM67 Silent p.P8P 0.26 TCGA-AA-A01R-01 1 232172517 232172517 G A DISC1 Silent p.A835A 0.11 TCGA-AA-A01R-01 1 232561526 232561526 C A SIPA1L2 Missense_Mutation p.R1480M 0.22 deleterious(0.01) probably_damaging(0.949) TCGA-AA-A01R-01 1 232601052 232601052 A T SIPA1L2 Missense_Mutation p.I785N 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 232945085 232945085 T C MAP10 3'UTR 0.28 TCGA-AA-A01R-01 1 233393964 233393964 A G PCNXL2 Silent p.I548I 0.48 TCGA-AA-A01R-01 1 233394783 233394783 C T PCNXL2 Silent p.P275P 0.25 TCGA-AA-A01R-01 1 234367267 234367267 G T SLC35F3 Missense_Mutation p.A130S 0.24 tolerated(0.63) benign(0.007) TCGA-AA-A01R-01 1 237054552 237054552 G A MTR Missense_Mutation p.D1043N 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 237494214 237494214 C T RYR2 Silent p.L69L 0.20 TCGA-AA-A01R-01 1 237777658 237777658 A - RYR2 Frame_Shift_Del p.K1745Nfs*25 0.30 TCGA-AA-A01R-01 1 238090812 238090812 A C RP11-193H5.1 RNA 0.33 TCGA-AA-A01R-01 1 240070951 240070951 A G CHRM3 Missense_Mutation p.Q67R 0.49 deleterious(0) benign(0.423) TCGA-AA-A01R-01 1 24119249 24119249 C T LYPLA2 Missense_Mutation p.A26V 0.26 tolerated(0.11) benign(0.002) TCGA-AA-A01R-01 1 24134781 24134781 G A HMGCL Silent p.Y198Y 0.35 TCGA-AA-A01R-01 1 241667497 241667497 T C FH Missense_Mutation p.H318R 0.16 tolerated(0.08) possibly_damaging(0.638) TCGA-AA-A01R-01 1 247464071 247464071 G A ZNF496 Missense_Mutation p.A505V 0.23 tolerated(0.4) benign(0) TCGA-AA-A01R-01 1 248084904 248084904 C T OR2T8 Silent p.N195N 0.24 TCGA-AA-A01R-01 1 248436532 248436532 G A OR2T33 Silent p.N195N 0.35 TCGA-AA-A01R-01 1 248652117 248652117 G A OR2T5 Silent p.A76A 0.23 TCGA-AA-A01R-01 1 248722565 248722565 C T OR2T29 Silent p.A76A 0.20 TCGA-AA-A01R-01 1 248902929 248902929 G A LYPD8 Missense_Mutation p.R75W 0.23 deleterious_low_confidence(0.03) unknown(0) TCGA-AA-A01R-01 1 249142288 249142288 G A ZNF672 Missense_Mutation p.R272H 0.25 tolerated(0.07) probably_damaging(0.963) TCGA-AA-A01R-01 1 26609406 26609406 C T UBXN11 Missense_Mutation p.R367Q 0.24 tolerated(0.26) benign(0.011) TCGA-AA-A01R-01 1 26738031 26738031 C T LIN28A Silent p.A62A 0.34 TCGA-AA-A01R-01 1 27087503 27087503 C T ARID1A Nonsense_Mutation p.R693* 0.29 TCGA-AA-A01R-01 1 27190465 27190465 C T SFN 3'UTR 0.35 TCGA-AA-A01R-01 1 27875057 27875057 T C AHDC1 Silent p.S1190S 0.26 TCGA-AA-A01R-01 1 32151695 32151695 C T COL16A1 Silent p.A627A 0.11 TCGA-AA-A01R-01 1 32498801 32498801 C T KHDRBS1 Missense_Mutation p.R213C 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-AA-A01R-01 1 32538634 32538634 C T TMEM39B 5'UTR 0.33 TCGA-AA-A01R-01 1 3313156 3313156 C T PRDM16 Silent p.D225D 0.24 TCGA-AA-A01R-01 1 33248074 33248074 G A YARS Missense_Mutation p.R325W 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-AA-A01R-01 1 33354525 33354525 G A HPCA Missense_Mutation p.R9Q 0.26 tolerated(0.15) benign(0.007) TCGA-AA-A01R-01 1 33363904 33363904 G A TMEM54 Silent p.G11G 0.40 TCGA-AA-A01R-01 1 3382669 3382669 C T ARHGEF16 Intron 0.46 TCGA-AA-A01R-01 1 34033233 34033233 C T CSMD2 Silent p.Q2757Q 0.27 TCGA-AA-A01R-01 1 3417267 3417267 G A MEGF6 Silent p.H879H 0.35 TCGA-AA-A01R-01 1 3425669 3425669 G A MEGF6 Missense_Mutation p.R500W 0.53 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 1 3425766 3425766 G A MEGF6 Silent p.F467F 0.24 TCGA-AA-A01R-01 1 35227066 35227066 G A GJB4 Missense_Mutation p.V71M 0.31 deleterious(0.03) possibly_damaging(0.893) TCGA-AA-A01R-01 1 36319247 36319247 C T AGO4 3'UTR 0.32 TCGA-AA-A01R-01 1 36552839 36552839 C T TEKT2 Missense_Mutation p.T261M 0.33 deleterious(0) probably_damaging(0.922) TCGA-AA-A01R-01 1 3703493 3703493 G A LRRC47 Missense_Mutation p.R333W 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 39913120 39913120 C T MACF1 Missense_Mutation p.A4482V 0.35 benign(0.207) TCGA-AA-A01R-01 1 43110443 43110443 C T CCDC30 Nonsense_Mutation p.R619* 0.33 TCGA-AA-A01R-01 1 43200949 43200949 C T CLDN19 Intron 0.36 TCGA-AA-A01R-01 1 43232511 43232511 T C LEPRE1 Silent p.A44A 0.25 TCGA-AA-A01R-01 1 43317628 43317628 G T ZNF691 3'Flank 0.32 TCGA-AA-A01R-01 1 43779015 43779015 C T TIE1 Missense_Mutation p.R713C 0.31 tolerated(0.11) benign(0.001) TCGA-AA-A01R-01 1 43870113 43870113 C T SZT2 Silent p.G130G 0.05 TCGA-AA-A01R-01 1 44463274 44463274 C T SLC6A9 Silent p.A688A 0.30 TCGA-AA-A01R-01 1 44684829 44684829 G A DMAP1 Silent p.A274A 0.42 TCGA-AA-A01R-01 1 45251901 45251901 C A BEST4 Splice_Site p.X161_splice 0.30 TCGA-AA-A01R-01 1 45474833 45474833 C T HECTD3 Missense_Mutation p.R352H 0.34 deleterious(0.01) benign(0.329) TCGA-AA-A01R-01 1 45671939 45671939 C T ZSWIM5 Silent p.P28P 0.34 TCGA-AA-A01R-01 1 46733194 46733194 C T RAD54L Missense_Mutation p.R319W 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 1 47013316 47013316 C T KNCN 3'UTR 0.29 TCGA-AA-A01R-01 1 47078684 47078684 G A MOB3C Missense_Mutation p.R156C 0.45 deleterious(0.05) benign(0.279) TCGA-AA-A01R-01 1 51439665 51439665 C T CDKN2C Missense_Mutation p.A77V 0.37 tolerated(0.21) benign(0.046) TCGA-AA-A01R-01 1 52854183 52854183 A C ORC1 Silent p.T438T 0.29 TCGA-AA-A01R-01 1 53925309 53925309 C T DMRTB1 Silent p.A61A 0.34 TCGA-AA-A01R-01 1 54387365 54387365 C T HSPB11 Missense_Mutation p.V132I 0.30 tolerated(0.36) benign(0.042) TCGA-AA-A01R-01 1 55518402 55518402 G T PCSK9 Missense_Mutation p.S246I 0.32 tolerated(0.07) benign(0.068) TCGA-AA-A01R-01 1 57476449 57476449 C A DAB1 Missense_Mutation p.Q529H 0.31 tolerated(0.21) benign(0.364) TCGA-AA-A01R-01 1 59139308 59139308 A G MYSM1 Silent p.R503R 0.28 TCGA-AA-A01R-01 1 5965733 5965733 C T NPHP4 Silent p.T574T 0.35 TCGA-AA-A01R-01 1 62329910 62329910 G A INADL Missense_Mutation p.G814R 0.22 tolerated(0.13) benign(0.439) TCGA-AA-A01R-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.43 TCGA-AA-A01R-01 1 6310547 6310547 G A GPR153 Missense_Mutation p.L373F 0.35 tolerated(0.61) benign(0.002) TCGA-AA-A01R-01 1 64644491 64644491 G T ROR1 Missense_Mutation p.A923S 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-AA-A01R-01 1 6500789 6500789 T C ESPN Missense_Mutation p.L260P 0.17 deleterious(0) possibly_damaging(0.844) TCGA-AA-A01R-01 1 65243523 65243523 T C RAVER2 Silent p.V178V 0.33 TCGA-AA-A01R-01 1 66087082 66087082 G A LEPR Silent p.V846V 0.26 TCGA-AA-A01R-01 1 6615461 6615461 G A TAS1R1 Missense_Mutation p.G10S 0.25 tolerated_low_confidence(0.48) benign(0.011) TCGA-AA-A01R-01 1 6727837 6727837 G A DNAJC11 Nonsense_Mutation p.R104* 0.31 TCGA-AA-A01R-01 1 70385472 70385472 C A LRRC7 Intron 0.38 TCGA-AA-A01R-01 1 77042615 77042616 - AAAG ST6GALNAC3 Intron 0.18 TCGA-AA-A01R-01 1 7724710 7724710 C T CAMTA1 Silent p.S701S 0.34 TCGA-AA-A01R-01 1 79356672 79356672 C T ELTD1 3'UTR 0.21 TCGA-AA-A01R-01 1 79357355 79357355 C T ELTD1 Missense_Mutation p.A622T 0.24 tolerated(0.09) probably_damaging(0.974) TCGA-AA-A01R-01 1 8025436 8025436 G A PARK7 Missense_Mutation p.R48H 0.27 deleterious(0) benign(0.443) TCGA-AA-A01R-01 1 82409238 82409238 A G LPHN2 Missense_Mutation p.Y328C 0.29 deleterious(0) probably_damaging(0.993) TCGA-AA-A01R-01 1 85331167 85331167 C T LPAR3 Missense_Mutation p.V213I 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A01R-01 1 86523622 86523622 C A COL24A1 Missense_Mutation p.G615C 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 1 86900313 86900313 A G CLCA2 Missense_Mutation p.H286R 0.33 tolerated(0.56) benign(0) TCGA-AA-A01R-01 1 89299057 89299057 C T PKN2 Nonsense_Mutation p.R961* 0.24 TCGA-AA-A01R-01 1 89733128 89733128 T - GBP5 Frame_Shift_Del p.I134Lfs*12 0.23 TCGA-AA-A01R-01 1 897797 897797 C T KLHL17 Silent p.A258A 0.36 TCGA-AA-A01R-01 1 91182128 91182128 C T BARHL2 Missense_Mutation p.G209R 0.28 deleterious(0.04) unknown(0) TCGA-AA-A01R-01 1 93646441 93646441 T C CCDC18 Splice_Site p.X53_splice 0.53 TCGA-AA-A01R-01 1 9642611 9642611 T - SLC25A33 3'UTR 0.44 TCGA-AA-A01R-01 1 989314 989314 G A AGRN Missense_Mutation p.V1945M 0.40 deleterious(0.04) possibly_damaging(0.897) TCGA-AA-A01R-01 20 1293998 1293998 G A SDCBP2 Missense_Mutation p.R124W 0.30 deleterious(0) probably_damaging(0.967) TCGA-AA-A01R-01 20 17417497 17417497 C T PCSK2 Missense_Mutation p.T285M 0.38 deleterious(0) probably_damaging(0.985) TCGA-AA-A01R-01 20 21346263 21346263 C T XRN2 Missense_Mutation p.R793W 0.33 deleterious(0) possibly_damaging(0.696) TCGA-AA-A01R-01 20 2321301 2321301 G A TGM3 3'UTR 0.44 TCGA-AA-A01R-01 20 23335390 23335390 A G NXT1 3'UTR 0.30 TCGA-AA-A01R-01 20 24989998 24989998 C T ACSS1 Missense_Mutation p.D600N 0.33 tolerated(0.22) benign(0.365) TCGA-AA-A01R-01 20 24993513 24993513 G A ACSS1 Missense_Mutation p.R548W 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 20 25459586 25459586 C A NINL Missense_Mutation p.R725L 0.29 deleterious(0) benign(0.341) TCGA-AA-A01R-01 20 25657018 25657018 G A ZNF337 Silent p.N302N 0.30 TCGA-AA-A01R-01 20 3018831 3018831 A G PTPRA 3'UTR 0.16 TCGA-AA-A01R-01 20 30232801 30232801 A - COX4I2 3'UTR 0.31 TCGA-AA-A01R-01 20 30432939 30432939 G A FOXS1 Missense_Mutation p.A136V 0.35 tolerated(0.16) benign(0.001) TCGA-AA-A01R-01 20 30496395 30496395 G A TTLL9 Missense_Mutation p.E70K 0.29 deleterious(0.04) benign(0.217) TCGA-AA-A01R-01 20 30602741 30602741 C T CCM2L Missense_Mutation p.P22L 0.30 tolerated(0.09) probably_damaging(0.974) TCGA-AA-A01R-01 20 31040105 31040105 C T C20orf112 Missense_Mutation p.G342R 0.29 deleterious(0) benign(0.027) TCGA-AA-A01R-01 20 3146855 3146855 C T LZTS3 Missense_Mutation p.R204Q 0.38 tolerated(0.17) possibly_damaging(0.885) TCGA-AA-A01R-01 20 3214824 3214824 A C SLC4A11 Missense_Mutation p.F186C 0.27 deleterious(0) possibly_damaging(0.831) TCGA-AA-A01R-01 20 333980 333980 G T NRSN2 Missense_Mutation p.A106S 0.25 deleterious(0.02) possibly_damaging(0.61) TCGA-AA-A01R-01 20 33632433 33632433 C T TRPC4AP Missense_Mutation p.R247Q 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A01R-01 20 33842534 33842534 C T MMP24 Missense_Mutation p.T265M 0.27 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 20 34025076 34025076 A C GDF5 Splice_Site p.X211_splice 0.35 TCGA-AA-A01R-01 20 34092442 34092442 A G CEP250 Missense_Mutation p.Q2082R 0.27 benign(0.012) TCGA-AA-A01R-01 20 34092665 34092665 G T CEP250 Missense_Mutation p.Q2156H 0.35 probably_damaging(0.981) TCGA-AA-A01R-01 20 34263091 34263091 C T NFS1 Missense_Mutation p.R275H 0.32 deleterious(0) probably_damaging(0.978) TCGA-AA-A01R-01 20 35545145 35545145 G A SAMHD1 Missense_Mutation p.R348C 0.28 deleterious(0.03) benign(0.002) TCGA-AA-A01R-01 20 36867997 36867997 T C KIAA1755 Silent p.P560P 0.34 TCGA-AA-A01R-01 20 3722951 3722951 C A HSPA12B Silent p.P54P 0.21 TCGA-AA-A01R-01 20 37353721 37353721 G A SLC32A1 Silent p.A118A 0.35 TCGA-AA-A01R-01 20 37580996 37580996 C T FAM83D Missense_Mutation p.R561W 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 20 39798134 39798134 G A PLCG1 Missense_Mutation p.R873Q 0.35 tolerated(0.08) benign(0.184) TCGA-AA-A01R-01 20 39830759 39830759 C T ZHX3 Missense_Mutation p.R933H 0.31 deleterious_low_confidence(0.01) benign(0.001) TCGA-AA-A01R-01 20 42331170 42331170 C A MYBL2 Missense_Mutation p.P331H 0.28 deleterious(0) benign(0.216) TCGA-AA-A01R-01 20 43353617 43353617 G A WISP2 Silent p.Q172Q 0.39 TCGA-AA-A01R-01 20 44507213 44507213 C T ZSWIM3 Silent p.G672G 0.42 TCGA-AA-A01R-01 20 44512884 44512884 T C ZSWIM1 3'UTR 0.34 TCGA-AA-A01R-01 20 44589331 44589331 C T ZNF335 Missense_Mutation p.R569H 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-AA-A01R-01 20 44665950 44665950 G A SLC12A5 Missense_Mutation p.V203M 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 20 44979101 44979101 G A SLC35C2 Missense_Mutation p.R344W 0.39 deleterious(0.01) benign(0) TCGA-AA-A01R-01 20 47266108 47266108 A C PREX1 Missense_Mutation p.L1012R 0.31 deleterious(0) possibly_damaging(0.866) TCGA-AA-A01R-01 20 47269910 47269910 C T PREX1 Missense_Mutation p.E779K 0.31 tolerated(0.32) benign(0.047) TCGA-AA-A01R-01 20 47630126 47630126 A G ARFGEF2 Missense_Mutation p.D1315G 0.28 deleterious(0.02) benign(0.027) TCGA-AA-A01R-01 20 48522746 48522746 G A SPATA2 Missense_Mutation p.R325C 0.41 deleterious(0.02) probably_damaging(0.985) TCGA-AA-A01R-01 20 489270 489270 G T CSNK2A1 5'UTR 0.30 TCGA-AA-A01R-01 20 49510791 49510791 G A ADNP Missense_Mutation p.P154S 0.30 tolerated(0.7) benign(0.026) TCGA-AA-A01R-01 20 49626464 49626464 G A KCNG1 Silent p.L138L 0.30 TCGA-AA-A01R-01 20 50287791 50287791 C T ATP9A Missense_Mutation p.R348H 0.50 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 20 50406576 50406576 G A SALL4 Missense_Mutation p.R816C 0.31 deleterious(0.02) possibly_damaging(0.73) TCGA-AA-A01R-01 20 5559069 5559069 G A GPCPD1 Missense_Mutation p.T221M 0.36 tolerated(0.07) probably_damaging(0.912) TCGA-AA-A01R-01 20 56099084 56099084 C T CTCFL Missense_Mutation p.V60I 0.30 tolerated(1) benign(0.002) TCGA-AA-A01R-01 20 56185392 56185392 C T ZBP1 Silent p.S302S 0.32 TCGA-AA-A01R-01 20 57269550 57269550 C T NPEPL1 Missense_Mutation p.R137C 0.35 deleterious(0) possibly_damaging(0.856) TCGA-AA-A01R-01 20 57603816 57603816 T C ATP5E 3'UTR 0.34 TCGA-AA-A01R-01 20 57766702 57766702 G - ZNF831 Frame_Shift_Del p.G211Afs*51 0.26 TCGA-AA-A01R-01 20 58519584 58519584 G A FAM217B Missense_Mutation p.V196I 0.35 tolerated(0.15) benign(0.05) TCGA-AA-A01R-01 20 58559834 58559834 C T CDH26 Nonsense_Mutation p.R228* 0.34 TCGA-AA-A01R-01 20 60294135 60294135 G A RP11-429E11.3 Missense_Mutation p.S31L 0.36 possibly_damaging(0.514) TCGA-AA-A01R-01 20 60448839 60448839 C T CDH4 Silent p.N311N 0.25 TCGA-AA-A01R-01 20 60884518 60884518 C T LAMA5 Silent p.V3654V 0.38 TCGA-AA-A01R-01 20 60990844 60990844 C A RBBP8NL Nonsense_Mutation p.E182* 0.42 TCGA-AA-A01R-01 20 61050191 61050191 C T GATA5 Silent p.P129P 0.35 TCGA-AA-A01R-01 20 61288316 61288316 G A SLCO4A1 Silent p.P170P 0.39 TCGA-AA-A01R-01 20 61439021 61439021 T C OGFR Intron 0.33 TCGA-AA-A01R-01 20 61510766 61510766 C T DIDO1 Missense_Mutation p.R2181H 0.25 possibly_damaging(0.522) TCGA-AA-A01R-01 20 61538606 61538606 C T DIDO1 Missense_Mutation p.A423T 0.33 benign(0.191) TCGA-AA-A01R-01 20 61981579 61981579 G A CHRNA4 Missense_Mutation p.T395M 0.31 tolerated(0.2) benign(0.017) TCGA-AA-A01R-01 20 62172298 62172298 C T SRMS Missense_Mutation p.R447H 0.33 tolerated(0.14) probably_damaging(0.959) TCGA-AA-A01R-01 20 62173907 62173907 G A SRMS Missense_Mutation p.R225W 0.28 deleterious(0.03) probably_damaging(0.984) TCGA-AA-A01R-01 20 62196773 62196773 G A HELZ2 Silent p.F1134F 0.31 TCGA-AA-A01R-01 20 62198436 62198436 C T HELZ2 Missense_Mutation p.V759M 0.29 tolerated(0.06) benign(0.329) TCGA-AA-A01R-01 20 62493011 62493011 G A ABHD16B Missense_Mutation p.A40T 0.44 tolerated(0.76) benign(0.001) TCGA-AA-A01R-01 20 745857 745857 C T SLC52A3 Missense_Mutation p.A188T 0.24 tolerated(0.95) benign(0) TCGA-AA-A01R-01 20 825798 825798 C T FAM110A Silent p.P117P 0.30 TCGA-AA-A01R-01 21 10951369 10951369 A T TPTE Missense_Mutation p.F115I 0.18 tolerated(0.46) benign(0.028) TCGA-AA-A01R-01 21 28213485 28213485 C A ADAMTS1 Splice_Site p.X404_splice 0.28 TCGA-AA-A01R-01 21 30339395 30339395 G A LTN1 Missense_Mutation p.T519M 0.28 tolerated(0.24) benign(0.005) TCGA-AA-A01R-01 21 30359089 30359089 C T LTN1 Missense_Mutation p.R116Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 21 31852451 31852451 G A KRTAP19-1 Silent p.Y62Y 0.33 TCGA-AA-A01R-01 21 32624446 32624446 G A TIAM1 Silent p.T341T 0.28 TCGA-AA-A01R-01 21 34123489 34123489 G A PAXBP1 Silent p.R516R 0.37 TCGA-AA-A01R-01 21 35183527 35183527 G A ITSN1 Splice_Site p.X856_splice 0.26 TCGA-AA-A01R-01 21 35279670 35279670 A G AP000304.12 Missense_Mutation p.V88A 0.27 deleterious(0.04) possibly_damaging(0.56) TCGA-AA-A01R-01 21 38118123 38118123 C T SIM2 Intron 0.30 TCGA-AA-A01R-01 21 38437839 38437839 T A PIGP 3'UTR 0.29 TCGA-AA-A01R-01 21 39870398 39870398 G T ERG Intron 0.30 TCGA-AA-A01R-01 21 40667674 40667675 AG - BRWD1 Frame_Shift_Del p.F202Yfs*5 0.25 TCGA-AA-A01R-01 21 41447080 41447080 T G DSCAM Missense_Mutation p.E1591A 0.33 tolerated(0.23) benign(0.007) TCGA-AA-A01R-01 21 42767625 42767625 G A MX2 Missense_Mutation p.R328Q 0.34 deleterious(0) probably_damaging(0.994) TCGA-AA-A01R-01 21 42807880 42807880 C T MX1 Silent p.A74A 0.34 TCGA-AA-A01R-01 21 43327878 43327878 G A C2CD2 Missense_Mutation p.A345V 0.26 tolerated(0.74) possibly_damaging(0.597) TCGA-AA-A01R-01 21 43782466 43782466 C T TFF1 3'UTR 0.39 TCGA-AA-A01R-01 21 43863428 43863428 G A UBASH3A Silent p.A546A 0.26 TCGA-AA-A01R-01 21 44279795 44279795 C T WDR4 Missense_Mutation p.G202R 0.37 tolerated(0.16) benign(0.003) TCGA-AA-A01R-01 21 44841560 44841560 C T SIK1 Missense_Mutation p.E153K 0.32 deleterious(0) probably_damaging(0.988) TCGA-AA-A01R-01 21 45564756 45564756 C T C21orf33 Silent p.C244C 0.23 TCGA-AA-A01R-01 21 45838422 45838422 G A TRPM2 Missense_Mutation p.E1149K 0.26 tolerated(0.44) benign(0.002) TCGA-AA-A01R-01 21 46021398 46021398 T C KRTAP10-7 Missense_Mutation p.C293R 0.37 deleterious(0) unknown(0) TCGA-AA-A01R-01 21 46326942 46326942 G A ITGB2 Silent p.G72G 0.06 TCGA-AA-A01R-01 21 46907403 46907403 C T COL18A1 Nonsense_Mutation p.R806* 0.32 TCGA-AA-A01R-01 21 47539014 47539014 G A COL6A2 Missense_Mutation p.R417H 0.30 tolerated(0.08) benign(0.41) TCGA-AA-A01R-01 21 47581586 47581586 C T SPATC1L Missense_Mutation p.E244K 0.28 deleterious(0.05) benign(0.056) TCGA-AA-A01R-01 21 47642586 47642586 C T LSS Missense_Mutation p.R129Q 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A01R-01 21 47685882 47685882 C T MCM3AP Silent p.A996A 0.27 TCGA-AA-A01R-01 21 47811276 47811276 G A PCNT Missense_Mutation p.E1401K 0.38 benign(0.001) TCGA-AA-A01R-01 21 47971612 47971612 G A DIP2A Missense_Mutation p.G969R 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 22 18021577 18021577 C T CECR2 Missense_Mutation p.A624V 0.46 tolerated(0.12) benign(0.005) TCGA-AA-A01R-01 22 18304842 18304842 C T MICAL3 Silent p.S1134S 0.25 TCGA-AA-A01R-01 22 19119399 19119399 C T TSSK2 Missense_Mutation p.R163W 0.31 deleterious(0.05) probably_damaging(0.935) TCGA-AA-A01R-01 22 19279197 19279197 A G CLTCL1 5'UTR 0.14 TCGA-AA-A01R-01 22 19766797 19766798 - AG GNB1L 3'Flank 0.24 TCGA-AA-A01R-01 22 20130698 20130698 C T ZDHHC8 Silent p.G515G 0.42 TCGA-AA-A01R-01 22 20458591 20458591 C T RIMBP3 Missense_Mutation p.G904D 0.05 tolerated(0.34) benign(0.003) TCGA-AA-A01R-01 22 21044595 21044595 A G POM121L4P RNA 0.57 TCGA-AA-A01R-01 22 21403296 21403296 G A AC002472.13 Missense_Mutation p.A158T 0.19 tolerated(0.23) benign(0.216) TCGA-AA-A01R-01 22 22041233 22041233 C T PPIL2 Silent p.Y281Y 0.27 TCGA-AA-A01R-01 22 22300481 22300481 C A PPM1F Splice_Site 0.50 TCGA-AA-A01R-01 22 24108331 24108331 C T CHCHD10 Silent p.Q131Q 0.31 TCGA-AA-A01R-01 22 24125612 24125612 C A MMP11 Missense_Mutation p.L450M 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-AA-A01R-01 22 24491942 24491942 G A CABIN1 Missense_Mutation p.D1279N 0.24 tolerated(0.12) benign(0.311) TCGA-AA-A01R-01 22 24982316 24982316 C T FAM211B Silent p.P162P 0.34 TCGA-AA-A01R-01 22 26168327 26168327 C T MYO18B Silent p.V573V 0.33 TCGA-AA-A01R-01 22 26173603 26173603 G A MYO18B Silent p.Q641Q 0.32 TCGA-AA-A01R-01 22 26830455 26830455 C T ASPHD2 Nonsense_Mutation p.R292* 0.25 TCGA-AA-A01R-01 22 26937140 26937140 G A TPST2 Missense_Mutation p.R153C 0.39 deleterious(0.01) possibly_damaging(0.826) TCGA-AA-A01R-01 22 28196403 28196403 C - MN1 Frame_Shift_Del p.P45Lfs*8 0.24 TCGA-AA-A01R-01 22 28395228 28395228 C T TTC28 Silent p.P1473P 0.29 TCGA-AA-A01R-01 22 30067836 30067836 C T NF2 Nonsense_Mutation p.R341* 0.34 TCGA-AA-A01R-01 22 30887872 30887872 C T SEC14L4 Missense_Mutation p.G287D 0.28 deleterious(0.03) benign(0.137) TCGA-AA-A01R-01 22 32011093 32011093 C T SFI1 Missense_Mutation p.T1043M 0.33 tolerated(0.23) benign(0.046) TCGA-AA-A01R-01 22 32108593 32108593 C T PRR14L Silent p.P1744P 0.27 TCGA-AA-A01R-01 22 32289604 32289604 A G DEPDC5 Missense_Mutation p.D1348G 0.27 tolerated(0.07) probably_damaging(0.989) TCGA-AA-A01R-01 22 32621682 32621682 A G SLC5A4 Missense_Mutation p.V470A 0.30 deleterious(0) possibly_damaging(0.816) TCGA-AA-A01R-01 22 32626992 32626992 G A SLC5A4 Silent p.Y364Y 0.38 TCGA-AA-A01R-01 22 36710222 36710222 G T MYH9 Missense_Mutation p.L508M 0.33 probably_damaging(0.991) TCGA-AA-A01R-01 22 37407100 37407100 G A TST Missense_Mutation p.R288C 0.32 tolerated(0.14) possibly_damaging(0.513) TCGA-AA-A01R-01 22 37770540 37770540 G A ELFN2 Silent p.I345I 0.32 TCGA-AA-A01R-01 22 38136960 38136960 C T TRIOBP Missense_Mutation p.T1748I 0.27 deleterious_low_confidence(0) benign(0.126) TCGA-AA-A01R-01 22 38369885 38369885 C T SOX10 Missense_Mutation p.V340M 0.22 tolerated(0.26) benign(0.379) TCGA-AA-A01R-01 22 38474456 38474456 C T SLC16A8 Missense_Mutation p.R485Q 0.39 tolerated(0.83) benign(0.001) TCGA-AA-A01R-01 22 38692409 38692409 C A CSNK1E Intron 0.33 TCGA-AA-A01R-01 22 38823839 38823839 G A KCNJ4 Missense_Mutation p.A100V 0.46 tolerated(0.2) benign(0.219) TCGA-AA-A01R-01 22 39083943 39083943 C A JOSD1 Missense_Mutation p.E191D 0.31 tolerated(0.16) benign(0.018) TCGA-AA-A01R-01 22 39358687 39358687 G A APOBEC3A 3'UTR 0.29 TCGA-AA-A01R-01 22 39411671 39411671 G A APOBEC3C Missense_Mutation p.R30Q 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-AA-A01R-01 22 39413961 39413961 G A APOBEC3C Missense_Mutation p.R122H 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-AA-A01R-01 22 39534655 39534655 G A CBX7 Missense_Mutation p.R78W 0.40 deleterious(0) possibly_damaging(0.821) TCGA-AA-A01R-01 22 40657951 40657951 C T TNRC6B Silent p.N77N 0.26 TCGA-AA-A01R-01 22 40805788 40805788 G A SGSM3 3'UTR 0.23 TCGA-AA-A01R-01 22 40831511 40831511 G A MKL1 Missense_Mutation p.R19W 0.36 deleterious(0) probably_damaging(0.988) TCGA-AA-A01R-01 22 41645346 41645346 G A RANGAP1 Missense_Mutation p.A561V 0.32 tolerated(0.33) probably_damaging(0.935) TCGA-AA-A01R-01 22 41967916 41967916 C A CSDC2 5'UTR 0.40 TCGA-AA-A01R-01 22 42296962 42296962 A G SREBF2 Intron 0.35 TCGA-AA-A01R-01 22 42981828 42981828 G A POLDIP3 Missense_Mutation p.T412M 0.34 deleterious(0.03) benign(0.014) TCGA-AA-A01R-01 22 43289531 43289531 C T PACSIN2 Missense_Mutation p.R50H 0.36 deleterious(0) probably_damaging(0.951) TCGA-AA-A01R-01 22 45601757 45601757 G A KIAA0930 Missense_Mutation p.R90W 0.27 deleterious(0.02) probably_damaging(0.965) TCGA-AA-A01R-01 22 46505159 46505159 C T FLJ27365 Silent p.G54G 0.34 TCGA-AA-A01R-01 22 50278253 50278253 C T ZBED4 Missense_Mutation p.R315W 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 22 50356614 50356614 C A PIM3 Missense_Mutation p.L274M 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 22 50943248 50943248 C T LMF2 Missense_Mutation p.D474N 0.29 tolerated(0.08) benign(0.325) TCGA-AA-A01R-01 22 50944794 50944794 C A LMF2 Missense_Mutation p.R172L 0.28 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 22 51012968 51012968 G A CPT1B Missense_Mutation p.A280V 0.30 deleterious(0) possibly_damaging(0.493) TCGA-AA-A01R-01 22 51016293 51016293 C T CPT1B Missense_Mutation p.G18R 0.19 deleterious(0) probably_damaging(0.995) TCGA-AA-A01R-01 22 51017484 51017484 G A CHKB 3'UTR 0.26 TCGA-AA-A01R-01 22 51117070 51117070 C T SHANK3 Missense_Mutation p.R133C 0.33 probably_damaging(0.998) TCGA-AA-A01R-01 22 51117813 51117813 C T SHANK3 Missense_Mutation p.A281V 0.10 probably_damaging(0.997) TCGA-AA-A01R-01 2 101594247 101594247 G A NPAS2 Missense_Mutation p.A490T 0.41 tolerated(0.4) benign(0.006) TCGA-AA-A01R-01 2 101650217 101650217 G A TBC1D8 Missense_Mutation p.A521V 0.32 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 2 102959977 102959977 C - IL1RL1 Intron 0.17 TCGA-AA-A01R-01 2 10581946 10581946 T C ODC1 Silent p.Q341Q 0.27 TCGA-AA-A01R-01 2 105859199 105859199 G A GPR45 Missense_Mutation p.R295H 0.35 tolerated(0.2) benign(0.016) TCGA-AA-A01R-01 2 106761671 106761671 G A UXS1 Silent p.D149D 0.27 TCGA-AA-A01R-01 2 109383653 109383653 C T RANBP2 Missense_Mutation p.P2220S 0.32 deleterious(0.02) probably_damaging(0.954) TCGA-AA-A01R-01 2 109964226 109964226 C T SH3RF3 Missense_Mutation p.R224W 0.28 deleterious(0) probably_damaging(0.995) TCGA-AA-A01R-01 2 110376317 110376317 A T SOWAHC 3'UTR 0.33 TCGA-AA-A01R-01 2 113950879 113950879 G A PSD4 Missense_Mutation p.R655Q 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 2 114709344 114709344 T C ACTR3 Silent p.R333R 0.33 TCGA-AA-A01R-01 2 116525901 116525901 G A DPP10 Missense_Mutation p.G385D 0.36 deleterious(0) benign(0.31) TCGA-AA-A01R-01 2 11767167 11767167 G A GREB1 Silent p.A1462A 0.26 TCGA-AA-A01R-01 2 118866049 118866049 C T INSIG2 3'UTR 0.21 TCGA-AA-A01R-01 2 120194496 120194496 G A TMEM37 Missense_Mutation p.R18H 0.38 tolerated(0.74) benign(0.001) TCGA-AA-A01R-01 2 120692413 120692413 C T PTPN4 Nonsense_Mutation p.R412* 0.34 TCGA-AA-A01R-01 2 120836117 120836117 C A EPB41L5 Missense_Mutation p.L255I 0.33 deleterious(0.03) possibly_damaging(0.651) TCGA-AA-A01R-01 2 124999867 124999867 C T CNTNAP5 Missense_Mutation p.T93M 0.34 deleterious(0) probably_damaging(0.985) TCGA-AA-A01R-01 2 127808779 127808779 G A BIN1 Missense_Mutation p.A471V 0.30 tolerated(0.2) benign(0.002) TCGA-AA-A01R-01 2 127950678 127950678 C T CYP27C1 Missense_Mutation p.V332M 0.34 deleterious(0.04) benign(0.021) TCGA-AA-A01R-01 2 128186454 128186454 C T PROC Missense_Mutation p.R440C 0.38 deleterious(0.04) benign(0.071) TCGA-AA-A01R-01 2 128482658 128482658 C T WDR33 Missense_Mutation p.R328Q 0.34 deleterious(0) unknown(0) TCGA-AA-A01R-01 2 128628468 128628468 G A AMMECR1L Nonsense_Mutation p.R185* 0.34 TCGA-AA-A01R-01 2 12880482 12880482 C T TRIB2 Silent p.D198D 0.33 TCGA-AA-A01R-01 2 12880574 12880574 G A TRIB2 Missense_Mutation p.S229N 0.31 tolerated(0.15) possibly_damaging(0.449) TCGA-AA-A01R-01 2 130737494 130737494 C T RAB6C 5'UTR 0.36 TCGA-AA-A01R-01 2 130739458 130739458 G A RAB6C 3'UTR 0.46 TCGA-AA-A01R-01 2 130939427 130939427 C - SMPD4 5'UTR 0.58 TCGA-AA-A01R-01 2 131525666 131525666 C T AMER3 3'UTR 0.36 TCGA-AA-A01R-01 2 132240254 132240254 G A TUBA3D Missense_Mutation p.D396N 0.25 deleterious_low_confidence(0.01) benign(0.014) TCGA-AA-A01R-01 2 133539951 133539951 A T NCKAP5 Nonsense_Mutation p.L1478* 0.26 TCGA-AA-A01R-01 2 133547741 133547741 G T NCKAP5 Missense_Mutation p.P316H 0.32 tolerated(0.23) benign(0.032) TCGA-AA-A01R-01 2 136561516 136561516 G A LCT Silent p.Y1549Y 0.26 TCGA-AA-A01R-01 2 136570445 136570445 C T LCT Missense_Mutation p.V597M 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 2 136620271 136620271 C T MCM6 Missense_Mutation p.V376I 0.37 deleterious(0) probably_damaging(0.986) TCGA-AA-A01R-01 2 136872415 136872415 A - CXCR4 3'UTR 0.25 TCGA-AA-A01R-01 2 139307764 139307764 T C SPOPL 5'UTR 0.33 TCGA-AA-A01R-01 2 141093272 141093272 C T LRP1B Missense_Mutation p.V4010I 0.32 benign(0.103) TCGA-AA-A01R-01 2 14776420 14776420 G A FAM84A 3'UTR 0.40 TCGA-AA-A01R-01 2 149226675 149226675 A G MBD5 Missense_Mutation p.Q388R 0.31 deleterious(0) benign(0.145) TCGA-AA-A01R-01 2 1500436 1500436 G A TPO Missense_Mutation p.R762H 0.33 tolerated(0.18) benign(0.009) TCGA-AA-A01R-01 2 152371377 152371377 C T NEB Silent p.T7657T 0.26 TCGA-AA-A01R-01 2 152396866 152396866 C T NEB Missense_Mutation p.A6962T 0.35 probably_damaging(1) TCGA-AA-A01R-01 2 152727063 152727063 C T CACNB4 Silent p.P227P 0.27 TCGA-AA-A01R-01 2 158115922 158115922 G A GALNT5 Missense_Mutation p.R443H 0.42 tolerated(0.5) benign(0.009) TCGA-AA-A01R-01 2 160035154 160035154 G A TANC1 Missense_Mutation p.V664I 0.33 tolerated(1) benign(0.003) TCGA-AA-A01R-01 2 160734962 160734962 A T LY75-CD302 Missense_Mutation p.D549E 0.26 tolerated(0.08) probably_damaging(0.971) TCGA-AA-A01R-01 2 162273121 162273121 A T TBR1 Missense_Mutation p.N67I 0.19 deleterious(0.01) benign(0.137) TCGA-AA-A01R-01 2 162757512 162757512 G A SLC4A10 Missense_Mutation p.R478Q 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-AA-A01R-01 2 163279905 163279905 G A KCNH7 Missense_Mutation p.R699C 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 2 163360976 163360976 T C KCNH7 Missense_Mutation p.N369D 0.27 deleterious(0.01) benign(0.289) TCGA-AA-A01R-01 2 165771691 165771691 C T SLC38A11 Missense_Mutation p.V205M 0.29 tolerated(0.26) benign(0.025) TCGA-AA-A01R-01 2 166170146 166170146 T A SCN2A Missense_Mutation p.Y351N 0.39 deleterious(0) probably_damaging(0.97) TCGA-AA-A01R-01 2 166201167 166201167 G A SCN2A Missense_Mutation p.A889T 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A01R-01 2 166535654 166535654 G T CSRNP3 Missense_Mutation p.E383D 0.30 tolerated(0.25) benign(0.006) TCGA-AA-A01R-01 2 168102643 168102643 C T XIRP2 Nonsense_Mutation p.R1581* 0.29 TCGA-AA-A01R-01 2 169780045 169780045 G T ABCB11 3'UTR 0.45 TCGA-AA-A01R-01 2 170090031 170090031 C T LRP2 Missense_Mutation p.R1663H 0.31 benign(0.001) TCGA-AA-A01R-01 2 170101288 170101288 G A LRP2 Silent p.T1115T 0.24 TCGA-AA-A01R-01 2 170147494 170147494 A G LRP2 Silent p.H261H 0.36 TCGA-AA-A01R-01 2 170371185 170371185 A G KLHL41 Silent p.A404A 0.30 TCGA-AA-A01R-01 2 172928559 172928559 G A METAP1D Missense_Mutation p.V107I 0.24 tolerated(0.74) benign(0.007) TCGA-AA-A01R-01 2 174783367 174783367 G A SP3 Missense_Mutation p.R596W 0.25 deleterious(0) probably_damaging(0.95) TCGA-AA-A01R-01 2 175268839 175268839 C T SCRN3 Missense_Mutation p.R184C 0.31 deleterious(0.03) possibly_damaging(0.709) TCGA-AA-A01R-01 2 179396154 179396154 G T TTN Missense_Mutation p.A35063D 0.39 TCGA-AA-A01R-01 2 179407817 179407817 C T TTN Missense_Mutation p.V32295M 0.36 TCGA-AA-A01R-01 2 179421585 179421585 G A TTN Silent p.I29432I 0.32 TCGA-AA-A01R-01 2 179449081 179449081 T C TTN Missense_Mutation p.R21733G 0.29 TCGA-AA-A01R-01 2 179471892 179471892 G A TTN Nonsense_Mutation p.Q17813* 0.29 TCGA-AA-A01R-01 2 1795050 1795050 A - MYT1L 3'UTR 0.21 TCGA-AA-A01R-01 2 179574536 179574536 C T TTN Missense_Mutation p.E9504K 0.29 TCGA-AA-A01R-01 2 179574564 179574564 A T TTN Missense_Mutation p.S9494R 0.27 TCGA-AA-A01R-01 2 179587192 179587192 C T TTN Missense_Mutation p.R7441Q 0.34 TCGA-AA-A01R-01 2 179610900 179610900 G A TTN Intron 0.25 TCGA-AA-A01R-01 2 18112959 18112959 G A KCNS3 Silent p.A228A 0.38 TCGA-AA-A01R-01 2 186673611 186673611 A - FSIP2 Frame_Shift_Del p.K6617Nfs*5 0.24 TCGA-AA-A01R-01 2 18765920 18765920 C T NT5C1B Missense_Mutation p.A255T 0.41 tolerated_low_confidence(1) benign(0.005) TCGA-AA-A01R-01 2 191845365 191845365 G A STAT1 Missense_Mutation p.P538L 0.37 tolerated(0.19) benign(0.103) TCGA-AA-A01R-01 2 198358153 198358153 T C HSPD1 Missense_Mutation p.Q255R 0.36 deleterious(0.02) benign(0.269) TCGA-AA-A01R-01 2 198361985 198361985 G T HSPD1 Silent p.A102A 0.30 TCGA-AA-A01R-01 2 20153593 20153593 A G WDR35 Splice_Site p.X478_splice 0.29 TCGA-AA-A01R-01 2 204599772 204599772 G C CD28 3'UTR 0.29 TCGA-AA-A01R-01 2 20478422 20478422 G A PUM2 Missense_Mutation p.P627S 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-AA-A01R-01 2 205986516 205986516 C T PARD3B Silent p.T336T 0.28 TCGA-AA-A01R-01 2 20649023 20649023 T - RHOB 3'UTR 0.24 TCGA-AA-A01R-01 2 207041182 207041182 G T GPR1 Missense_Mutation p.L264M 0.30 deleterious(0.02) possibly_damaging(0.888) TCGA-AA-A01R-01 2 207174321 207174321 G A ZDBF2 Missense_Mutation p.R1690Q 0.30 tolerated(0.36) benign(0.01) TCGA-AA-A01R-01 2 207953263 207953263 C T KLF7 Missense_Mutation p.R259H 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 2 20824597 20824597 G A HS1BP3 Missense_Mutation p.R227W 0.28 deleterious(0.01) probably_damaging(0.964) TCGA-AA-A01R-01 2 208841726 208841726 C T PLEKHM3 Missense_Mutation p.E399K 0.27 tolerated(0.49) possibly_damaging(0.574) TCGA-AA-A01R-01 2 210783291 210783291 G A UNC80 Silent p.S1683S 0.33 TCGA-AA-A01R-01 2 211019062 211019062 A - KANSL1L Frame_Shift_Del p.L82* 0.21 TCGA-AA-A01R-01 2 21230680 21230680 C T APOB Silent p.R3020R 0.28 TCGA-AA-A01R-01 2 214149327 214149327 C T SPAG16 Silent p.G40G 0.45 TCGA-AA-A01R-01 2 216190751 216190751 C T ATIC Nonsense_Mutation p.R141* 0.26 TCGA-AA-A01R-01 2 216256429 216256429 T C FN1 Missense_Mutation p.Y1393C 0.31 deleterious(0) probably_damaging(0.992) TCGA-AA-A01R-01 2 219856851 219856851 C T CRYBA2 Silent p.L92L 0.37 TCGA-AA-A01R-01 2 219892386 219892386 A T CCDC108 Missense_Mutation p.F733I 0.34 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 2 220073248 220073248 C G ZFAND2B Intron 0.30 TCGA-AA-A01R-01 2 220135956 220135956 C T TUBA4B RNA 0.41 TCGA-AA-A01R-01 2 220162130 220162130 G A PTPRN Missense_Mutation p.T638M 0.31 deleterious(0.02) possibly_damaging(0.587) TCGA-AA-A01R-01 2 220414496 220414496 G A TMEM198 Missense_Mutation p.A335T 0.44 tolerated(0.67) benign(0) TCGA-AA-A01R-01 2 220431579 220431579 G A OBSL1 Nonsense_Mutation p.Q703* 0.36 TCGA-AA-A01R-01 2 220435055 220435055 G A OBSL1 Silent p.G300G 0.36 TCGA-AA-A01R-01 2 220504357 220504357 G A SLC4A3 Silent p.A1086A 0.33 TCGA-AA-A01R-01 2 224849483 224849483 C T SERPINE2 Silent p.Q302Q 0.41 TCGA-AA-A01R-01 2 226447266 226447266 C T NYAP2 Missense_Mutation p.A378V 0.37 deleterious(0.03) benign(0.019) TCGA-AA-A01R-01 2 227662351 227662351 C T IRS1 Silent p.P368P 0.47 TCGA-AA-A01R-01 2 230650571 230650571 G A TRIP12 Missense_Mutation p.R1591C 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-AA-A01R-01 2 230705620 230705620 G A TRIP12 Missense_Mutation p.R309C 0.07 deleterious(0) possibly_damaging(0.642) TCGA-AA-A01R-01 2 232672230 232672230 G A COPS7B Missense_Mutation p.A224T 0.36 tolerated(0.15) benign(0.278) TCGA-AA-A01R-01 2 233195473 233195473 C T DIS3L2 Missense_Mutation p.S666F 0.36 deleterious(0.04) possibly_damaging(0.857) TCGA-AA-A01R-01 2 233322351 233322351 A G ALPI Missense_Mutation p.Q242R 0.33 tolerated(0.25) benign(0.007) TCGA-AA-A01R-01 2 234858740 234858740 C T TRPM8 Missense_Mutation p.R364C 0.37 deleterious(0) possibly_damaging(0.65) TCGA-AA-A01R-01 2 234869591 234869591 G A TRPM8 Missense_Mutation p.A512T 0.28 tolerated(0.14) probably_damaging(0.964) TCGA-AA-A01R-01 2 237272456 237272457 - T IQCA1 Frame_Shift_Ins p.N612Kfs*25 0.17 TCGA-AA-A01R-01 2 238253701 238253701 G A COL6A3 Missense_Mutation p.P2388S 0.30 unknown(0) TCGA-AA-A01R-01 2 238785934 238785934 C A RAMP1 Missense_Mutation p.L41I 0.37 deleterious(0.01) probably_damaging(0.966) TCGA-AA-A01R-01 2 24055128 24055128 G A ATAD2B Intron 0.22 TCGA-AA-A01R-01 2 240960787 240960787 C A NDUFA10 Missense_Mutation p.S96I 0.33 tolerated(0.15) benign(0.194) TCGA-AA-A01R-01 2 241696755 241696755 G - KIF1A Frame_Shift_Del p.L947Cfs*4 0.22 TCGA-AA-A01R-01 2 241973253 241973253 C T SNED1 Silent p.S201S 0.33 TCGA-AA-A01R-01 2 242170238 242170238 C T HDLBP Missense_Mutation p.R1137H 0.32 deleterious(0.01) possibly_damaging(0.57) TCGA-AA-A01R-01 2 242173274 242173274 G A HDLBP Silent p.D1083D 0.26 TCGA-AA-A01R-01 2 242434990 242434990 A G STK25 3'UTR 0.21 TCGA-AA-A01R-01 2 24245737 24245737 C T MFSD2B Missense_Mutation p.R342C 0.30 deleterious(0) probably_damaging(0.977) TCGA-AA-A01R-01 2 242573366 242573366 A T THAP4 Missense_Mutation p.L69Q 0.35 tolerated_low_confidence(0.19) probably_damaging(0.999) TCGA-AA-A01R-01 2 242651431 242651431 C T ING5 Nonsense_Mutation p.R143* 0.34 TCGA-AA-A01R-01 2 242742949 242742949 G A GAL3ST2 Missense_Mutation p.A189T 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 2 24952627 24952627 G A NCOA1 Silent p.P1048P 0.27 TCGA-AA-A01R-01 2 24964907 24964907 G A NCOA1 Silent p.P1186P 0.34 TCGA-AA-A01R-01 2 26203965 26203965 G A KIF3C Silent p.G274G 0.27 TCGA-AA-A01R-01 2 26696038 26696038 C T OTOF Missense_Mutation p.R1232Q 0.31 tolerated(0.06) benign(0.235) TCGA-AA-A01R-01 2 27249157 27249157 G A MAPRE3 Missense_Mutation p.A263T 0.32 deleterious(0.01) benign(0.042) TCGA-AA-A01R-01 2 27263267 27263267 C T TMEM214 Silent p.L616L 0.29 TCGA-AA-A01R-01 2 27305048 27305048 C T EMILIN1 Silent p.S203S 0.30 TCGA-AA-A01R-01 2 27305052 27305052 C T EMILIN1 Missense_Mutation p.R205C 0.30 probably_damaging(0.983) TCGA-AA-A01R-01 2 27308928 27308928 G A EMILIN1 3'UTR 0.36 TCGA-AA-A01R-01 2 27439904 27439904 G A ATRAID 3'UTR 0.46 TCGA-AA-A01R-01 2 27685972 27685972 G A IFT172 Missense_Mutation p.R672W 0.31 deleterious(0) benign(0.001) TCGA-AA-A01R-01 2 28764630 28764630 C T PLB1 Silent p.T277T 0.22 TCGA-AA-A01R-01 2 29226424 29226424 G A FAM179A Missense_Mutation p.V236M 0.32 tolerated(0.05) benign(0.085) TCGA-AA-A01R-01 2 29606679 29606679 G A ALK Nonsense_Mutation p.R401* 0.26 TCGA-AA-A01R-01 2 31489172 31489172 C T EHD3 Missense_Mutation p.R404W 0.35 deleterious(0.02) benign(0.339) TCGA-AA-A01R-01 2 32157190 32157190 G A MEMO1 Missense_Mutation p.T53M 0.29 deleterious(0.01) possibly_damaging(0.527) TCGA-AA-A01R-01 2 33622300 33622300 C T LTBP1 Silent p.C1645C 0.27 TCGA-AA-A01R-01 2 33764177 33764177 C T RASGRP3 Missense_Mutation p.T393M 0.36 tolerated(0.23) possibly_damaging(0.802) TCGA-AA-A01R-01 2 3691420 3691420 G A COLEC11 Silent p.T190T 0.06 TCGA-AA-A01R-01 2 38978538 38978538 C A SRSF7 5'UTR 0.33 TCGA-AA-A01R-01 2 39089429 39089429 T C DHX57 Missense_Mutation p.N144D 0.34 tolerated(0.84) benign(0) TCGA-AA-A01R-01 2 42991306 42991306 C T OXER1 Missense_Mutation p.R5H 0.30 tolerated_low_confidence(0.21) benign(0.009) TCGA-AA-A01R-01 2 43010506 43010506 C T HAAO Missense_Mutation p.V100M 0.22 tolerated(0.17) benign(0.138) TCGA-AA-A01R-01 2 43989479 43989479 T C PLEKHH2 Missense_Mutation p.W1370R 0.30 deleterious(0) possibly_damaging(0.894) TCGA-AA-A01R-01 2 44132916 44132916 C T LRPPRC Silent p.A1093A 0.24 TCGA-AA-A01R-01 2 44502985 44502985 C T SLC3A1 Missense_Mutation p.T104I 0.38 deleterious(0) probably_damaging(0.931) TCGA-AA-A01R-01 2 48025864 48025864 C T MSH6 Nonsense_Mutation p.R248* 0.46 TCGA-AA-A01R-01 2 51255121 51255121 G A NRXN1 Silent p.C97C 0.69 TCGA-AA-A01R-01 2 54482285 54482285 C T TSPYL6 Missense_Mutation p.G335E 0.37 tolerated(1) benign(0.007) TCGA-AA-A01R-01 2 54849604 54849604 C T SPTBN1 Silent p.R348R 0.29 TCGA-AA-A01R-01 2 55479717 55479717 G A MTIF2 Missense_Mutation p.A246V 0.10 deleterious(0.02) possibly_damaging(0.907) TCGA-AA-A01R-01 2 60998723 60998723 C T PAPOLG Missense_Mutation p.R188C 0.29 tolerated(0.12) benign(0.032) TCGA-AA-A01R-01 2 61544864 61544864 G A USP34 Silent p.G1069G 0.29 TCGA-AA-A01R-01 2 63272232 63272232 C T EHBP1 Silent p.R1174R 0.30 TCGA-AA-A01R-01 2 65243671 65243671 G A SLC1A4 Missense_Mutation p.A300T 0.31 tolerated(1) benign(0.037) TCGA-AA-A01R-01 2 65540997 65540997 G A SPRED2 Missense_Mutation p.R299W 0.23 deleterious(0) possibly_damaging(0.794) TCGA-AA-A01R-01 2 68385659 68385659 A G PNO1 Missense_Mutation p.R119G 0.27 deleterious(0) possibly_damaging(0.691) TCGA-AA-A01R-01 2 68882574 68882574 G A PROKR1 Missense_Mutation p.V350I 0.34 tolerated(0.28) benign(0) TCGA-AA-A01R-01 2 69002484 69002484 C T ARHGAP25 Nonsense_Mutation p.Q65* 0.45 TCGA-AA-A01R-01 2 69053261 69053261 A G ARHGAP25 Missense_Mutation p.K626E 0.35 tolerated(0.2) benign(0.015) TCGA-AA-A01R-01 2 71795459 71795459 C T DYSF Missense_Mutation p.P952L 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 2 74043619 74043619 A G C2orf78 Missense_Mutation p.T757A 0.26 deleterious(0.04) possibly_damaging(0.742) TCGA-AA-A01R-01 2 74327637 74327638 - G TET3 Frame_Shift_Ins p.V1107Gfs*44 0.27 TCGA-AA-A01R-01 2 74642137 74642137 C A C2orf81 Silent p.L362L 0.20 TCGA-AA-A01R-01 2 74642813 74642813 G A C2orf81 Intron 0.31 TCGA-AA-A01R-01 2 74733181 74733181 G T PCGF1 Missense_Mutation p.P143Q 0.35 tolerated(0.32) benign(0.067) TCGA-AA-A01R-01 2 74753830 74753831 - T AUP1 3'UTR 0.28 TCGA-AA-A01R-01 2 74900582 74900583 - G SEMA4F Splice_Site p.X186_splice 0.35 TCGA-AA-A01R-01 2 79350057 79350057 G A REG1A Missense_Mutation p.V138M 0.33 deleterious(0.05) probably_damaging(0.963) TCGA-AA-A01R-01 2 80529941 80529941 C T LRRTM1 Missense_Mutation p.R335H 0.28 tolerated(0.35) benign(0.002) TCGA-AA-A01R-01 2 8925926 8925926 C T KIDINS220 Missense_Mutation p.R725H 0.25 tolerated(0.24) possibly_damaging(0.861) TCGA-AA-A01R-01 2 9547147 9547147 G A ITGB1BP1 Intron 0.29 TCGA-AA-A01R-01 2 96525700 96525700 C T ANKRD36C Missense_Mutation p.V296I 0.14 tolerated(0.19) benign(0.013) TCGA-AA-A01R-01 2 96781057 96781057 G A ADRA2B Missense_Mutation p.P278S 0.37 tolerated(0.11) benign(0.032) TCGA-AA-A01R-01 2 97267997 97267997 T C KANSL3 Missense_Mutation p.I780V 0.28 tolerated_low_confidence(0.38) benign(0.002) TCGA-AA-A01R-01 2 97365733 97365733 C T FER1L5 RNA 0.39 TCGA-AA-A01R-01 2 97405588 97405588 C T LMAN2L Intron 0.28 TCGA-AA-A01R-01 2 98354277 98354277 C T ZAP70 Missense_Mutation p.R514C 0.28 tolerated(0.1) probably_damaging(0.98) TCGA-AA-A01R-01 2 98779407 98779407 C A VWA3B Missense_Mutation p.P361H 0.32 tolerated(0.54) benign(0.003) TCGA-AA-A01R-01 2 99170757 99170757 C T INPP4A Silent p.C462C 0.29 TCGA-AA-A01R-01 2 99907878 99907878 C T LYG1 Missense_Mutation p.R52H 0.29 tolerated(0.1) benign(0.187) TCGA-AA-A01R-01 3 100105110 100105110 G A TOMM70A Missense_Mutation p.R193C 0.25 deleterious(0) probably_damaging(0.989) TCGA-AA-A01R-01 3 100174741 100174741 G T LNP1 Missense_Mutation p.A170S 0.30 tolerated(0.4) benign(0.318) TCGA-AA-A01R-01 3 100566448 100566448 G A ABI3BP Missense_Mutation p.P507L 0.29 tolerated(0.59) benign(0) TCGA-AA-A01R-01 3 10251350 10251350 G A IRAK2 Missense_Mutation p.D168N 0.35 tolerated(1) benign(0.001) TCGA-AA-A01R-01 3 108388535 108388535 C T DZIP3 Missense_Mutation p.R811C 0.38 deleterious(0) probably_damaging(0.983) TCGA-AA-A01R-01 3 108836946 108836946 C T MORC1 5'UTR 0.38 TCGA-AA-A01R-01 3 109178740 109178740 T A RP11-702L6.4 RNA 0.29 TCGA-AA-A01R-01 3 112324501 112324501 G A CCDC80 Silent p.D872D 0.31 TCGA-AA-A01R-01 3 112326062 112326062 C A CCDC80 Nonsense_Mutation p.E823* 0.42 TCGA-AA-A01R-01 3 112358139 112358139 C T CCDC80 Missense_Mutation p.S205N 0.41 tolerated(0.41) benign(0.002) TCGA-AA-A01R-01 3 113595109 113595109 T C GRAMD1C Splice_Site p.X153_splice 0.32 TCGA-AA-A01R-01 3 113697176 113697176 G A KIAA1407 Silent p.Y821Y 0.33 TCGA-AA-A01R-01 3 11744445 11744445 G A VGLL4 Missense_Mutation p.R22C 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.534) TCGA-AA-A01R-01 3 118931614 118931614 A G B4GALT4 Intron 0.44 TCGA-AA-A01R-01 3 119121221 119121221 C T ARHGAP31 Missense_Mutation p.P541L 0.33 tolerated(0.22) benign(0.015) TCGA-AA-A01R-01 3 119336940 119336940 C T PLA1A Silent p.L277L 0.34 TCGA-AA-A01R-01 3 119379006 119379007 - GCAGACCACA POPDC2 Frame_Shift_Ins p.L89Cfs*16 0.10 TCGA-AA-A01R-01 3 12195178 12195178 G A TIMP4 Missense_Mutation p.S171L 0.35 deleterious(0.01) possibly_damaging(0.625) TCGA-AA-A01R-01 3 122168454 122168454 G A KPNA1 Missense_Mutation p.A295V 0.39 tolerated(0.05) benign(0.424) TCGA-AA-A01R-01 3 122354952 122354953 - T PARP15 3'UTR 0.17 TCGA-AA-A01R-01 3 123419707 123419707 G A MYLK Nonsense_Mutation p.R870* 0.12 TCGA-AA-A01R-01 3 123452975 123452975 C T MYLK Missense_Mutation p.A290T 0.25 tolerated(0.9) benign(0.044) TCGA-AA-A01R-01 3 124629311 124629311 C T MUC13 Missense_Mutation p.A429T 0.40 deleterious(0.02) possibly_damaging(0.64) TCGA-AA-A01R-01 3 125824614 125824614 C T ALDH1L1 Missense_Mutation p.A880T 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-AA-A01R-01 3 126160629 126160629 G A ZXDC Silent p.G791G 0.28 TCGA-AA-A01R-01 3 126733152 126733152 C T PLXNA1 Silent p.D846D 0.48 TCGA-AA-A01R-01 3 126736304 126736304 C T PLXNA1 Missense_Mutation p.R1105C 0.27 tolerated(0.17) possibly_damaging(0.564) TCGA-AA-A01R-01 3 128200118 128200118 C T GATA2 Missense_Mutation p.R396Q 0.35 deleterious(0) probably_damaging(0.945) TCGA-AA-A01R-01 3 12858669 12858669 G A CAND2 Silent p.S746S 0.38 TCGA-AA-A01R-01 3 129112044 129112044 G A SNORA7B 3'Flank 0.50 TCGA-AA-A01R-01 3 129251142 129251142 G A RHO Silent p.T193T 0.25 TCGA-AA-A01R-01 3 129373835 129373835 G T TMCC1 Silent p.S541S 0.32 TCGA-AA-A01R-01 3 12983283 12983283 C T IQSEC1 Missense_Mutation p.G50S 0.24 tolerated_low_confidence(0.8) benign(0.003) TCGA-AA-A01R-01 3 130159520 130159520 T C COL6A5 Missense_Mutation p.V2113A 0.32 tolerated(0.16) possibly_damaging(0.694) TCGA-AA-A01R-01 3 130285973 130285973 C T COL6A6 Silent p.I570I 0.31 TCGA-AA-A01R-01 3 130871280 130871280 C T NEK11 Silent p.F232F 0.32 TCGA-AA-A01R-01 3 131253981 131253981 A G CPNE4 3'UTR 0.33 TCGA-AA-A01R-01 3 13379370 13379370 G A NUP210 Silent p.R1173R 0.48 TCGA-AA-A01R-01 3 13438917 13438917 G A NUP210 Missense_Mutation p.R126C 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-AA-A01R-01 3 134968251 134968251 G A EPHB1 Missense_Mutation p.A922T 0.29 tolerated(0.1) probably_damaging(0.977) TCGA-AA-A01R-01 3 13670511 13670511 C T FBLN2 Silent p.R892R 0.26 TCGA-AA-A01R-01 3 138256129 138256129 G A CEP70 Nonsense_Mutation p.Q176* 0.28 TCGA-AA-A01R-01 3 14190420 14190420 C T XPC Missense_Mutation p.R715Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 3 142681379 142681379 C T PAQR9 Missense_Mutation p.R267H 0.30 tolerated(0.24) possibly_damaging(0.71) TCGA-AA-A01R-01 3 143186026 143186026 C T SLC9A9 Missense_Mutation p.R441Q 0.35 deleterious(0) probably_damaging(0.932) TCGA-AA-A01R-01 3 14551449 14551449 C T GRIP2 RNA 0.38 TCGA-AA-A01R-01 3 14693278 14693278 G A CCDC174 5'UTR 0.35 TCGA-AA-A01R-01 3 147108853 147108853 C T ZIC4 Missense_Mutation p.R340H 0.47 deleterious(0.01) probably_damaging(0.976) TCGA-AA-A01R-01 3 151155382 151155382 C T IGSF10 Missense_Mutation p.V2323M 0.44 tolerated(0.48) benign(0.271) TCGA-AA-A01R-01 3 153840505 153840505 G A ARHGEF26 Missense_Mutation p.A242T 0.18 deleterious(0) possibly_damaging(0.878) TCGA-AA-A01R-01 3 154146568 154146568 C T GPR149 Silent p.A279A 0.25 TCGA-AA-A01R-01 3 155205891 155205891 G A PLCH1 Missense_Mutation p.R837W 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 3 157154588 157154588 C A PTX3 5'UTR 0.27 TCGA-AA-A01R-01 3 158428698 158428698 G A RARRES1 Missense_Mutation p.R122C 0.26 deleterious(0.01) possibly_damaging(0.892) TCGA-AA-A01R-01 3 160395094 160395094 A G ARL14 5'UTR 0.42 TCGA-AA-A01R-01 3 16250164 16250164 A G GALNT15 Missense_Mutation p.I356V 0.41 tolerated(0.42) benign(0.024) TCGA-AA-A01R-01 3 17052001 17052001 A G PLCL2 Missense_Mutation p.Y262C 0.34 tolerated(0.1) benign(0.182) TCGA-AA-A01R-01 3 170723136 170723136 G A SLC2A2 Nonsense_Mutation p.R301* 0.33 TCGA-AA-A01R-01 3 182910862 182910862 C T MCF2L2 Missense_Mutation p.G981R 0.24 tolerated(0.52) benign(0.007) TCGA-AA-A01R-01 3 183474383 183474383 G A YEATS2 Silent p.V486V 0.30 TCGA-AA-A01R-01 3 183479892 183479892 T C YEATS2 Missense_Mutation p.I591T 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-A01R-01 3 183679308 183679308 C T ABCC5 Silent p.P790P 0.25 TCGA-AA-A01R-01 3 183770910 183770910 C T HTR3C Silent p.C14C 0.37 TCGA-AA-A01R-01 3 183824012 183824012 C T HTR3E Missense_Mutation p.P367L 0.20 tolerated(0.06) benign(0.179) TCGA-AA-A01R-01 3 183824016 183824016 C T HTR3E Silent p.P368P 0.21 TCGA-AA-A01R-01 3 183824082 183824082 G A HTR3E Silent p.A390A 0.26 TCGA-AA-A01R-01 3 183897972 183897972 G A AP2M1 Missense_Mutation p.G119D 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 3 184009965 184009965 G T ECE2 Missense_Mutation p.R864L 0.34 tolerated(0.06) benign(0.169) TCGA-AA-A01R-01 3 186303350 186303350 C T DNAJB11 3'UTR 0.75 TCGA-AA-A01R-01 3 186953436 186953436 G A MASP1 3'UTR 0.42 TCGA-AA-A01R-01 3 188242500 188242500 C T LPP Silent p.D118D 0.29 TCGA-AA-A01R-01 3 188327613 188327613 C T LPP Missense_Mutation p.A365V 0.33 tolerated(0.31) benign(0.002) TCGA-AA-A01R-01 3 189456541 189456541 C T TP63 Missense_Mutation p.S101L 0.28 tolerated(0.24) benign(0.002) TCGA-AA-A01R-01 3 190159254 190159254 T C TMEM207 Missense_Mutation p.D44G 0.42 tolerated(0.08) benign(0.024) TCGA-AA-A01R-01 3 195245974 195245974 G A PPP1R2 Nonsense_Mutation p.R138* 0.06 TCGA-AA-A01R-01 3 197420648 197420648 C T KIAA0226 Missense_Mutation p.R575H 0.31 tolerated(0.46) benign(0.003) TCGA-AA-A01R-01 3 23631283 23631283 C T UBE2E2 Silent p.D189D 0.29 TCGA-AA-A01R-01 3 25668727 25668727 C T TOP2B Missense_Mutation p.R651H 0.31 deleterious(0) probably_damaging(0.931) TCGA-AA-A01R-01 3 30715678 30715678 G A TGFBR2 Missense_Mutation p.D471N 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 3 31621412 31621412 G A STT3B Missense_Mutation p.G179S 0.29 tolerated(0.37) probably_damaging(0.996) TCGA-AA-A01R-01 3 32815000 32815000 C G CNOT10 Missense_Mutation p.A771G 0.30 tolerated(0.38) benign(0.03) TCGA-AA-A01R-01 3 33134757 33134757 G A TMPPE Missense_Mutation p.R311W 0.34 deleterious(0.02) possibly_damaging(0.72) TCGA-AA-A01R-01 3 33183964 33183964 C A CRTAP 3'UTR 0.28 TCGA-AA-A01R-01 3 36779289 36779289 G A DCLK3 Missense_Mutation p.R288C 0.27 deleterious(0) benign(0.01) TCGA-AA-A01R-01 3 37845355 37845355 C T ITGA9 Silent p.Y977Y 0.32 TCGA-AA-A01R-01 3 38043990 38043990 C T VILL Missense_Mutation p.A528V 0.07 tolerated(0.13) probably_damaging(0.998) TCGA-AA-A01R-01 3 38127738 38127738 C T DLEC1 Missense_Mutation p.P481L 0.33 tolerated(0.47) benign(0.091) TCGA-AA-A01R-01 3 38743435 38743435 C T SCN10A Missense_Mutation p.V1518I 0.27 tolerated(1) benign(0.28) TCGA-AA-A01R-01 3 38781051 38781051 G A SCN10A Silent p.G745G 0.32 TCGA-AA-A01R-01 3 38888499 38888499 C T SCN11A Missense_Mutation p.A1688T 0.26 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 3 39229229 39229229 G A XIRP1 Nonsense_Mutation p.R570* 0.30 TCGA-AA-A01R-01 3 40468994 40468994 G A ENTPD3 Missense_Mutation p.D529N 0.25 deleterious_low_confidence(0.01) benign(0.157) TCGA-AA-A01R-01 3 40528746 40528746 C T ZNF619 Missense_Mutation p.R289W 0.32 tolerated(0.16) benign(0.004) TCGA-AA-A01R-01 3 40574507 40574507 C T ZNF621 Missense_Mutation p.R416C 0.34 tolerated(0.08) benign(0.002) TCGA-AA-A01R-01 3 41973481 41973481 A G ULK4 Silent p.P132P 0.25 TCGA-AA-A01R-01 3 42229597 42229597 G A TRAK1 Missense_Mutation p.A181T 0.37 tolerated(0.13) probably_damaging(0.921) TCGA-AA-A01R-01 3 42610409 42610409 G A SEC22C Silent p.L44L 0.41 TCGA-AA-A01R-01 3 42732452 42732452 C T KLHL40 Missense_Mutation p.T570M 0.42 tolerated(0.13) benign(0.225) TCGA-AA-A01R-01 3 45942966 45942966 T C CCR9 Missense_Mutation p.V229A 0.33 deleterious(0) benign(0.402) TCGA-AA-A01R-01 3 46245736 46245736 C T CCR1 Silent p.P23P 0.23 TCGA-AA-A01R-01 3 46415455 46415455 C T CCR5 3'UTR 0.36 TCGA-AA-A01R-01 3 46717821 46717821 G A ALS2CL Silent p.Y700Y 0.33 TCGA-AA-A01R-01 3 46727067 46727067 G A ALS2CL Missense_Mutation p.P245L 0.37 tolerated(0.11) benign(0.028) TCGA-AA-A01R-01 3 47042540 47042540 C T NBEAL2 Missense_Mutation p.S1452L 0.36 tolerated(0.65) benign(0.003) TCGA-AA-A01R-01 3 47050845 47050845 G A NBEAL2 3'UTR 0.49 TCGA-AA-A01R-01 3 47361205 47361205 T C KLHL18 Silent p.H64H 0.40 TCGA-AA-A01R-01 3 47450484 47450484 C T PTPN23 Missense_Mutation p.R517C 0.25 unknown(0) TCGA-AA-A01R-01 3 47454400 47454400 C A PTPN23 Missense_Mutation p.P1546T 0.25 unknown(0) TCGA-AA-A01R-01 3 47727560 47727560 G A SMARCC1 Missense_Mutation p.A455V 0.25 deleterious(0) probably_damaging(0.988) TCGA-AA-A01R-01 3 47891532 47891532 G A DHX30 Silent p.G1169G 0.32 TCGA-AA-A01R-01 3 48336668 48336668 C T NME6 Silent p.T105T 0.30 TCGA-AA-A01R-01 3 48465623 48465623 C T PLXNB1 Missense_Mutation p.R133Q 0.35 tolerated(0.54) benign(0.01) TCGA-AA-A01R-01 3 48677684 48677684 G A CELSR3 Silent p.L3112L 0.28 TCGA-AA-A01R-01 3 48686637 48686637 G A CELSR3 Missense_Mutation p.R2162W 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 3 48697085 48697085 G A CELSR3 Missense_Mutation p.R995W 0.21 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 3 49148412 49148412 C T USP19 Silent p.R1170R 0.35 TCGA-AA-A01R-01 3 49152447 49152447 C T USP19 Missense_Mutation p.R707H 0.39 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 3 49159157 49159157 G A LAMB2 Missense_Mutation p.T1687M 0.37 tolerated(0.12) probably_damaging(0.964) TCGA-AA-A01R-01 3 49349075 49349075 C T USP4 Silent p.A236A 0.36 TCGA-AA-A01R-01 3 49413009 49413009 C T RHOA Missense_Mutation p.R5Q 0.23 tolerated(0.06) benign(0.012) TCGA-AA-A01R-01 3 49452264 49452264 C T TCTA Missense_Mutation p.A94V 0.26 deleterious(0.02) benign(0.023) TCGA-AA-A01R-01 3 49455006 49455006 G T AMT Silent p.P393P 0.32 TCGA-AA-A01R-01 3 49568496 49568496 G A DAG1 Silent p.A184A 0.25 TCGA-AA-A01R-01 3 49690023 49690023 C T BSN Missense_Mutation p.R1012C 0.31 unknown(0) TCGA-AA-A01R-01 3 49738946 49738946 G A RNF123 Missense_Mutation p.V434I 0.34 tolerated(0.51) benign(0.003) TCGA-AA-A01R-01 3 49757038 49757038 G A AMIGO3 5'UTR 0.38 TCGA-AA-A01R-01 3 49869404 49869404 G A TRAIP Missense_Mutation p.R328W 0.24 tolerated(0.09) possibly_damaging(0.462) TCGA-AA-A01R-01 3 50312866 50312866 C T LSMEM2 5'Flank 0.23 TCGA-AA-A01R-01 3 50338046 50338046 C T HYAL1 Silent p.T392T 0.34 TCGA-AA-A01R-01 3 52383097 52383097 A G DNAH1 Missense_Mutation p.K767R 0.29 benign(0.002) TCGA-AA-A01R-01 3 52473987 52473987 C T SEMA3G Missense_Mutation p.R424H 0.33 deleterious(0.02) benign(0.07) TCGA-AA-A01R-01 3 52474084 52474084 G A SEMA3G Missense_Mutation p.R392W 0.35 deleterious(0.02) probably_damaging(0.927) TCGA-AA-A01R-01 3 52475291 52475291 G A SEMA3G Missense_Mutation p.R268C 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 3 52548456 52548456 C T STAB1 Missense_Mutation p.R1208C 0.31 deleterious(0) probably_damaging(0.985) TCGA-AA-A01R-01 3 53223108 53223108 A G PRKCD Missense_Mutation p.D530G 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 3 53276233 53276233 C T TKT Missense_Mutation p.A45T 0.31 deleterious(0.02) probably_damaging(0.913) TCGA-AA-A01R-01 3 53700473 53700473 G T CACNA1D Missense_Mutation p.G343C 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 3 56667936 56667936 G A FAM208A Silent p.N961N 0.39 TCGA-AA-A01R-01 3 58135897 58135897 C T FLNB Missense_Mutation p.R2135W 0.36 deleterious(0) probably_damaging(0.916) TCGA-AA-A01R-01 3 62570893 62570893 C T CADPS Missense_Mutation p.R515Q 0.35 deleterious(0) benign(0.238) TCGA-AA-A01R-01 3 63264045 63264045 G A SYNPR 5'UTR 0.35 TCGA-AA-A01R-01 3 63601164 63601164 A G SYNPR 3'UTR 0.28 TCGA-AA-A01R-01 3 65416493 65416493 C T MAGI1 Missense_Mutation p.R476Q 0.37 tolerated(0.31) benign(0.367) TCGA-AA-A01R-01 3 66420958 66420958 C T SLC25A26 Silent p.G213G 0.26 TCGA-AA-A01R-01 3 66434606 66434606 T C LRIG1 Missense_Mutation p.N627S 0.15 tolerated(0.89) benign(0.033) TCGA-AA-A01R-01 3 67053715 67053715 C A KBTBD8 Silent p.A108A 0.26 TCGA-AA-A01R-01 3 68466451 68466451 T G FAM19A1 Missense_Mutation p.I47R 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 3 74418355 74418355 G A CNTN3 Missense_Mutation p.R311C 0.23 deleterious(0) probably_damaging(0.982) TCGA-AA-A01R-01 3 74474039 74474039 G A CNTN3 Silent p.G137G 0.30 TCGA-AA-A01R-01 3 8809219 8809219 A C OXTR Missense_Mutation p.C219G 0.32 deleterious(0) probably_damaging(0.992) TCGA-AA-A01R-01 3 97185299 97185299 A G EPHA6 Intron 0.29 TCGA-AA-A01R-01 3 9870828 9870828 G A TTLL3 Missense_Mutation p.A578T 0.34 tolerated(0.41) benign(0.341) TCGA-AA-A01R-01 4 100264146 100264146 A T ADH1C Missense_Mutation p.C212S 0.33 possibly_damaging(0.731) TCGA-AA-A01R-01 4 103499935 103499935 G T NFKB1 Intron 0.29 TCGA-AA-A01R-01 4 106640422 106640422 C T GSTCD Missense_Mutation p.P211L 0.31 tolerated(0.06) benign(0.034) TCGA-AA-A01R-01 4 108824419 108824419 C T SGMS2 Missense_Mutation p.R202W 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 4 108866751 108866751 C T CYP2U1 Silent p.P372P 0.42 TCGA-AA-A01R-01 4 110610408 110610408 A G CASP6 3'UTR 0.35 TCGA-AA-A01R-01 4 113348783 113348783 G A ALPK1 Missense_Mutation p.D253N 0.19 deleterious(0) probably_damaging(0.965) TCGA-AA-A01R-01 4 114213658 114213658 C T ANK2 Silent p.N788N 0.33 TCGA-AA-A01R-01 4 114823912 114823912 T C ARSJ Missense_Mutation p.I440V 0.27 tolerated(0.28) benign(0.1) TCGA-AA-A01R-01 4 121843746 121843746 C T PRDM5 Silent p.V6V 0.27 TCGA-AA-A01R-01 4 1232000 1232000 C T CTBP1 Missense_Mutation p.A56T 0.31 deleterious(0) probably_damaging(0.945) TCGA-AA-A01R-01 4 123377577 123377577 G T IL2 Missense_Mutation p.L7M 0.36 deleterious(0.01) probably_damaging(0.961) TCGA-AA-A01R-01 4 126329914 126329914 C T FAT4 Missense_Mutation p.T1962I 0.25 possibly_damaging(0.477) TCGA-AA-A01R-01 4 126372370 126372370 A G FAT4 Missense_Mutation p.D3400G 0.33 probably_damaging(0.999) TCGA-AA-A01R-01 4 129964613 129964613 A G SCLT1 Silent p.A57A 0.25 TCGA-AA-A01R-01 4 1309303 1309303 G A MAEA Missense_Mutation p.R124H 0.32 deleterious(0.03) benign(0.334) TCGA-AA-A01R-01 4 1321459 1321459 C T MAEA Silent p.L208L 0.41 TCGA-AA-A01R-01 4 134075509 134075509 C T PCDH10 Silent p.R893R 0.34 TCGA-AA-A01R-01 4 135122152 135122152 C T PABPC4L Missense_Mutation p.R66H 0.30 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-AA-A01R-01 4 138442805 138442805 T A PCDH18 Missense_Mutation p.D929V 0.45 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 4 140283020 140283020 C A NAA15 Missense_Mutation p.A561D 0.35 deleterious(0) probably_damaging(0.994) TCGA-AA-A01R-01 4 140640663 140640663 T C MAML3 Silent p.P1077P 0.37 TCGA-AA-A01R-01 4 141543896 141543896 G A TBC1D9 Missense_Mutation p.P1085L 0.44 tolerated(0.07) benign(0.014) TCGA-AA-A01R-01 4 144481050 144481050 C T SMARCA5 3'Flank 0.39 TCGA-AA-A01R-01 4 146824038 146824038 G A ZNF827 Missense_Mutation p.R125W 0.21 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 4 147561255 147561255 C T POU4F2 Silent p.H175H 0.24 TCGA-AA-A01R-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.61 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 4 154318377 154318377 C T MND1 Nonsense_Mutation p.R120* 0.17 TCGA-AA-A01R-01 4 154709583 154709583 G - SFRP2 Frame_Shift_Del p.W136Gfs*50 0.14 TCGA-AA-A01R-01 4 15504503 15504503 G A CC2D2A Missense_Mutation p.R132Q 0.29 tolerated_low_confidence(0.56) benign(0.004) TCGA-AA-A01R-01 4 155156525 155156525 G A DCHS2 Silent p.G2638G 0.18 TCGA-AA-A01R-01 4 155157203 155157203 C A DCHS2 Missense_Mutation p.W2412C 0.02 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A01R-01 4 155180787 155180787 C A DCHS2 Missense_Mutation p.Q1778H 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-AA-A01R-01 4 155250756 155250756 C T DCHS2 Silent p.A824A 0.18 TCGA-AA-A01R-01 4 156643241 156643241 A T GUCY1A3 Nonsense_Mutation p.K590* 0.61 TCGA-AA-A01R-01 4 156723425 156723425 G T GUCY1B3 Intron 0.54 TCGA-AA-A01R-01 4 16189968 16189968 C T TAPT1 Missense_Mutation p.R208H 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 4 164272572 164272572 C T NPY5R Missense_Mutation p.P383S 0.18 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 4 175225483 175225483 G T CEP44 Missense_Mutation p.G157V 0.48 tolerated(0.3) possibly_damaging(0.527) TCGA-AA-A01R-01 4 177071291 177071292 - A WDR17 Frame_Shift_Ins p.L742Tfs*15 0.32 TCGA-AA-A01R-01 4 17707404 17707404 G A FAM184B Missense_Mutation p.P381S 0.36 tolerated(0.39) benign(0.013) TCGA-AA-A01R-01 4 178355642 178355642 G A AGA Missense_Mutation p.R234C 0.21 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 4 1808053 1808053 G A FGFR3 Missense_Mutation p.V679I 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-AA-A01R-01 4 183714058 183714058 C T TENM3 Missense_Mutation p.T2078M 0.49 deleterious(0) probably_damaging(0.93) TCGA-AA-A01R-01 4 187524362 187524362 C T FAT1 Missense_Mutation p.R3773H 0.55 benign(0.022) TCGA-AA-A01R-01 4 187630303 187630303 G A FAT1 Missense_Mutation p.R227C 0.47 probably_damaging(1) TCGA-AA-A01R-01 4 1962776 1962776 C T WHSC1 Silent p.N1090N 0.24 TCGA-AA-A01R-01 4 20525513 20525513 G A SLIT2 Missense_Mutation p.A421T 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-AA-A01R-01 4 20535200 20535200 T G SLIT2 Missense_Mutation p.F565C 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-AA-A01R-01 4 2306226 2306226 G C ZFYVE28 Missense_Mutation p.P614R 0.48 tolerated_low_confidence(0.14) benign(0.001) TCGA-AA-A01R-01 4 23833222 23833222 A G PPARGC1A Silent p.P129P 0.39 TCGA-AA-A01R-01 4 3240237 3240237 C T HTT Silent p.D2985D 0.29 TCGA-AA-A01R-01 4 3318586 3318586 T C RGS12 Missense_Mutation p.M230T 0.37 deleterious(0) probably_damaging(0.989) TCGA-AA-A01R-01 4 3432494 3432494 C T RGS12 Missense_Mutation p.A1309V 0.28 tolerated(0.62) benign(0.002) TCGA-AA-A01R-01 4 36231095 36231095 C T ARAP2 Missense_Mutation p.S5N 0.33 tolerated(0.07) benign(0.002) TCGA-AA-A01R-01 4 38016396 38016396 G A TBC1D1 Silent p.V228V 0.33 TCGA-AA-A01R-01 4 41984122 41984122 C T DCAF4L1 Nonsense_Mutation p.R105* 0.26 TCGA-AA-A01R-01 4 41988429 41988429 T G DCAF4L1 3'UTR 0.31 TCGA-AA-A01R-01 4 42065022 42065022 C T SLC30A9 Missense_Mutation p.R306C 0.07 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 4 46737005 46737005 G T COX7B2 Missense_Mutation p.P69T 0.30 deleterious(0) probably_damaging(0.964) TCGA-AA-A01R-01 4 48069667 48069667 G A TXK Missense_Mutation p.A524V 0.26 tolerated(0.23) benign(0.079) TCGA-AA-A01R-01 4 48542543 48542543 C T FRYL Missense_Mutation p.R2041Q 0.28 deleterious(0.04) possibly_damaging(0.778) TCGA-AA-A01R-01 4 55155225 55155225 T C PDGFRA Missense_Mutation p.S942P 0.27 tolerated(0.59) probably_damaging(0.937) TCGA-AA-A01R-01 4 56230247 56230247 A G SRD5A3 Missense_Mutation p.E124G 0.31 tolerated(0.13) benign(0.002) TCGA-AA-A01R-01 4 56301763 56301763 T A CLOCK Splice_Site p.X788_splice 0.36 TCGA-AA-A01R-01 4 56345063 56345063 A G CLOCK Missense_Mutation p.S59P 0.32 deleterious(0) possibly_damaging(0.864) TCGA-AA-A01R-01 4 57181042 57181042 C T KIAA1211 Silent p.A458A 0.27 TCGA-AA-A01R-01 4 57219643 57219643 C T AASDH Silent p.L501L 0.29 TCGA-AA-A01R-01 4 5857906 5857906 C T CRMP1 Missense_Mutation p.V262I 0.30 tolerated(0.29) benign(0.009) TCGA-AA-A01R-01 4 6107413 6107413 G A JAKMIP1 Silent p.R137R 0.24 TCGA-AA-A01R-01 4 6290749 6290749 G A WFS1 Silent p.T117T 0.40 TCGA-AA-A01R-01 4 6293666 6293666 C T WFS1 Silent p.P218P 0.28 TCGA-AA-A01R-01 4 65147223 65147223 A - TECRL Frame_Shift_Del p.F296Sfs*21 0.24 TCGA-AA-A01R-01 4 6588823 6588823 G A MAN2B2 Silent p.A164A 0.29 TCGA-AA-A01R-01 4 68610310 68610310 G A GNRHR Missense_Mutation p.R240W 0.36 deleterious(0) possibly_damaging(0.79) TCGA-AA-A01R-01 4 69202893 69202893 C T YTHDC1 Silent p.E245E 0.30 TCGA-AA-A01R-01 4 70512815 70512815 C T UGT2A1 Missense_Mutation p.C183Y 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 4 71588315 71588315 G A RUFY3 Missense_Mutation p.D9N 0.30 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-AA-A01R-01 4 73148756 73148756 T A ADAMTS3 3'UTR 0.34 TCGA-AA-A01R-01 4 7719883 7719883 C T SORCS2 Silent p.D799D 0.29 TCGA-AA-A01R-01 4 77941690 77941690 C T SEPT11 Nonsense_Mutation p.R274* 0.30 TCGA-AA-A01R-01 4 78652648 78652648 G A CNOT6L Missense_Mutation p.A306V 0.39 deleterious(0.01) probably_damaging(1) TCGA-AA-A01R-01 4 79461921 79461921 G A FRAS1 Silent p.A3894A 0.38 TCGA-AA-A01R-01 4 79832589 79832589 C T BMP2K Missense_Mutation p.T963M 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-AA-A01R-01 4 8229160 8229160 G A SH3TC1 Missense_Mutation p.R580Q 0.38 deleterious(0.04) probably_damaging(0.993) TCGA-AA-A01R-01 4 86643084 86643084 A T ARHGAP24 Missense_Mutation p.N76I 0.32 deleterious(0) benign(0.192) TCGA-AA-A01R-01 4 88989152 88989152 G A PKD2 Missense_Mutation p.G821R 0.31 deleterious(0.01) probably_damaging(1) TCGA-AA-A01R-01 4 90036012 90036012 G T TIGD2 3'UTR 0.39 TCGA-AA-A01R-01 4 94690558 94690558 C T GRID2 Missense_Mutation p.T853M 0.33 tolerated(0.3) benign(0.047) TCGA-AA-A01R-01 4 9785349 9785349 G C DRD5 3'UTR 0.13 TCGA-AA-A01R-01 5 1038076 1038076 G A NKD2 Missense_Mutation p.R315Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-AA-A01R-01 5 1057750 1057750 G A SLC12A7 Silent p.H954H 0.29 TCGA-AA-A01R-01 5 108168476 108168476 G A FER Nonsense_Mutation p.W71* 0.27 TCGA-AA-A01R-01 5 108691616 108691616 C A PJA2 Missense_Mutation p.E588D 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01R-01 5 109106146 109106146 G A MAN2A1 Missense_Mutation p.C367Y 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 5 110407439 110407439 G A TSLP 5'UTR 0.24 TCGA-AA-A01R-01 5 11082866 11082866 G A CTNND2 Silent p.C910C 0.30 TCGA-AA-A01R-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.28 TCGA-AA-A01R-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.28 TCGA-AA-A01R-01 5 112384920 112384920 G A MCC Missense_Mutation p.T842M 0.36 deleterious(0.02) possibly_damaging(0.781) TCGA-AA-A01R-01 5 112770587 112770587 C T TSSK1B 5'UTR 0.42 TCGA-AA-A01R-01 5 112860778 112860778 G A YTHDC2 Missense_Mutation p.V127I 0.32 tolerated(1) benign(0.001) TCGA-AA-A01R-01 5 115177087 115177087 T - ATG12 Frame_Shift_Del p.I55Lfs*5 0.26 TCGA-AA-A01R-01 5 115350146 115350146 C T AQPEP Missense_Mutation p.A791V 0.25 tolerated(0.11) benign(0.139) TCGA-AA-A01R-01 5 120022338 120022338 G A PRR16 Silent p.V260V 0.26 TCGA-AA-A01R-01 5 126771097 126771097 A G MEGF10 Missense_Mutation p.T674A 0.32 tolerated(0.71) benign(0.002) TCGA-AA-A01R-01 5 126869328 126869328 A G PRRC1 Silent p.E257E 0.32 TCGA-AA-A01R-01 5 1278780 1278780 G A TERT Silent p.H754H 0.34 TCGA-AA-A01R-01 5 129520371 129520371 C A CHSY3 Missense_Mutation p.S512R 0.29 tolerated(0.51) benign(0.159) TCGA-AA-A01R-01 5 131310506 131310506 G A ACSL6 Intron 0.29 TCGA-AA-A01R-01 5 132736510 132736510 T C FSTL4 Missense_Mutation p.N110S 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 5 133642368 133642368 G A CDKL3 Missense_Mutation p.R464C 0.31 tolerated(0.08) possibly_damaging(0.893) TCGA-AA-A01R-01 5 134193802 134193802 A G C5orf24 3'UTR 0.36 TCGA-AA-A01R-01 5 137426786 137426786 G C WNT8A 3'UTR 0.55 TCGA-AA-A01R-01 5 137500599 137500599 G T BRD8 Missense_Mutation p.P512H 0.07 tolerated(0.16) possibly_damaging(0.541) TCGA-AA-A01R-01 5 137902719 137902719 G A HSPA9 Missense_Mutation p.R284W 0.29 tolerated_low_confidence(0.07) benign(0.003) TCGA-AA-A01R-01 5 138266583 138266583 G T CTNNA1 Nonsense_Mutation p.G753* 0.30 TCGA-AA-A01R-01 5 138723350 138723350 G A MZB1 3'UTR 0.23 TCGA-AA-A01R-01 5 139060342 139060342 G A CXXC5 Silent p.P78P 0.28 TCGA-AA-A01R-01 5 139267060 139267060 G A NRG2 Missense_Mutation p.T246M 0.27 deleterious(0.02) probably_damaging(0.922) TCGA-AA-A01R-01 5 139726031 139726031 G T HBEGF 5'UTR 0.53 TCGA-AA-A01R-01 5 139946949 139946949 C T SLC35A4 Silent p.C65C 0.36 TCGA-AA-A01R-01 5 140222666 140222666 C T PCDHA8 Missense_Mutation p.A587V 0.35 tolerated_low_confidence(0.11) benign(0.016) TCGA-AA-A01R-01 5 140230078 140230078 G A PCDHA9 Silent p.L666L 0.34 TCGA-AA-A01R-01 5 140256614 140256614 G A PCDHA12 Silent p.A519A 0.34 TCGA-AA-A01R-01 5 140347072 140347072 G A PCDHAC2 Missense_Mutation p.A241T 0.36 tolerated(0.08) possibly_damaging(0.585) TCGA-AA-A01R-01 5 140553577 140553577 C T PCDHB7 Silent p.D387D 0.30 TCGA-AA-A01R-01 5 140562651 140562651 A G PCDHB16 Missense_Mutation p.S173G 0.33 deleterious_low_confidence(0.04) benign(0.119) TCGA-AA-A01R-01 5 140596168 140596168 G A PCDHB13 3'UTR 0.30 TCGA-AA-A01R-01 5 1406340 1406340 C T SLC6A3 Missense_Mutation p.R521Q 0.36 tolerated(0.09) benign(0.364) TCGA-AA-A01R-01 5 140720504 140720504 G A PCDHGA2 Missense_Mutation p.A656T 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.577) TCGA-AA-A01R-01 5 140788426 140788426 C T PCDHGB6 Silent p.D219D 0.31 TCGA-AA-A01R-01 5 140807357 140807357 C T PCDHGB6 Intron 0.53 TCGA-AA-A01R-01 5 140812230 140812230 G T PCDHGA12 Missense_Mutation p.R635I 0.35 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-AA-A01R-01 5 141021127 141021127 G A FCHSD1 Missense_Mutation p.R671C 0.33 deleterious(0) unknown(0) TCGA-AA-A01R-01 5 141041285 141041285 G A ARAP3 Missense_Mutation p.R1029C 0.34 deleterious(0.04) possibly_damaging(0.86) TCGA-AA-A01R-01 5 14487619 14487619 C G TRIO Silent p.G2294G 0.30 TCGA-AA-A01R-01 5 147040853 147040853 C T JAKMIP2 Silent p.Q95Q 0.31 TCGA-AA-A01R-01 5 14711255 14711255 G A ANKH 3'UTR 0.42 TCGA-AA-A01R-01 5 147806845 147806845 T C FBXO38 Missense_Mutation p.F663S 0.42 tolerated_low_confidence(0.38) probably_damaging(0.981) TCGA-AA-A01R-01 5 149406394 149406394 G A HMGXB3 Missense_Mutation p.R529Q 0.12 tolerated(0.24) benign(0.085) TCGA-AA-A01R-01 5 150029070 150029070 G - SYNPO Frame_Shift_Del p.E657Rfs*2 0.33 TCGA-AA-A01R-01 5 150922979 150922979 G A FAT2 Missense_Mutation p.T2570M 0.31 possibly_damaging(0.634) TCGA-AA-A01R-01 5 151771837 151771837 A G NMUR2 Missense_Mutation p.M388T 0.36 tolerated_low_confidence(0.28) benign(0) TCGA-AA-A01R-01 5 156670725 156670725 A G ITK Missense_Mutation p.K385E 0.33 tolerated(0.07) benign(0.001) TCGA-AA-A01R-01 5 157106902 157106902 G A C5orf52 Silent p.L125L 0.31 TCGA-AA-A01R-01 5 162880887 162880887 C T NUDCD2 3'UTR 0.26 TCGA-AA-A01R-01 5 162910099 162910100 - A HMMR Frame_Shift_Ins p.I538Nfs*3 0.25 TCGA-AA-A01R-01 5 163039 163039 G A PLEKHG4B Missense_Mutation p.R595Q 0.33 tolerated(0.4) benign(0.007) TCGA-AA-A01R-01 5 164028152 164028152 G T CTC-340A15.2 RNA 0.33 TCGA-AA-A01R-01 5 16572168 16572168 C T FAM134B Missense_Mutation p.V122I 0.23 tolerated(0.52) benign(0.019) TCGA-AA-A01R-01 5 171296813 171296813 T C FBXW11 Splice_Site p.X463_splice 0.42 TCGA-AA-A01R-01 5 171773199 171773199 C T SH3PXD2B Missense_Mutation p.A377T 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 5 175717455 175717455 C T SIMC1 Intron 0.32 TCGA-AA-A01R-01 5 176315478 176315478 C T HK3 Missense_Mutation p.V387I 0.39 tolerated(0.36) benign(0.046) TCGA-AA-A01R-01 5 176738407 176738408 - G MXD3 Frame_Shift_Ins p.Q50Pfs*15 0.34 TCGA-AA-A01R-01 5 176813546 176813546 G A SLC34A1 Missense_Mutation p.V171I 0.36 tolerated(0.14) possibly_damaging(0.881) TCGA-AA-A01R-01 5 176829187 176829187 G A F12 3'UTR 0.50 TCGA-AA-A01R-01 5 176859022 176859022 C T GRK6 Missense_Mutation p.R59W 0.35 deleterious(0) probably_damaging(0.923) TCGA-AA-A01R-01 5 176881993 176881993 G T PRR7 5'UTR 0.67 TCGA-AA-A01R-01 5 176915210 176915210 C T PDLIM7 Silent p.P303P 0.23 TCGA-AA-A01R-01 5 177035584 177035584 C T B4GALT7 Silent p.D228D 0.48 TCGA-AA-A01R-01 5 177059616 177059616 T C RP11-1277A3.2 Intron 0.39 TCGA-AA-A01R-01 5 180219193 180219193 C T MGAT1 Missense_Mutation p.R260H 0.13 probably_damaging(0.996) TCGA-AA-A01R-01 5 180661483 180661483 G A TRIM41 Missense_Mutation p.R534H 0.32 deleterious(0) possibly_damaging(0.501) TCGA-AA-A01R-01 5 21802329 21802329 G T CDH12 Silent p.T401T 0.38 TCGA-AA-A01R-01 5 224547 224547 C T SDHA Nonsense_Mutation p.R75* 0.32 TCGA-AA-A01R-01 5 23526569 23526569 G T PRDM9 Nonsense_Mutation p.E458* 0.35 TCGA-AA-A01R-01 5 24498606 24498606 G A CDH10 Silent p.R472R 0.37 TCGA-AA-A01R-01 5 31511212 31511212 G A DROSHA Silent p.S454S 0.31 TCGA-AA-A01R-01 5 31526817 31526817 G A DROSHA Nonsense_Mutation p.R75* 0.33 TCGA-AA-A01R-01 5 32074084 32074084 C T PDZD2 Missense_Mutation p.R958C 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 5 32090758 32090758 G A PDZD2 Missense_Mutation p.E2402K 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A01R-01 5 32739001 32739001 C T NPR3 Silent p.H308H 0.28 TCGA-AA-A01R-01 5 3599390 3599390 G A IRX1 Missense_Mutation p.A110T 0.29 tolerated(0.18) probably_damaging(0.959) TCGA-AA-A01R-01 5 36680546 36680546 G A SLC1A3 Missense_Mutation p.V382M 0.43 tolerated(0.06) probably_damaging(0.975) TCGA-AA-A01R-01 5 37000958 37000958 G T NIPBL Missense_Mutation p.R1181M 0.31 deleterious(0.03) probably_damaging(0.969) TCGA-AA-A01R-01 5 38975693 38975693 C A RICTOR Missense_Mutation p.A279S 0.09 tolerated(0.3) benign(0.031) TCGA-AA-A01R-01 5 40692317 40692317 G A PTGER4 Missense_Mutation p.R435Q 0.05 tolerated_low_confidence(0.41) benign(0.033) TCGA-AA-A01R-01 5 40981632 40981632 T C C7 Missense_Mutation p.I830T 0.04 deleterious(0) benign(0.216) TCGA-AA-A01R-01 5 41038981 41038981 A - MROH2B Frame_Shift_Del p.S691Lfs*6 0.30 TCGA-AA-A01R-01 5 476160 476160 C T SLC9A3 Silent p.A705A 0.32 TCGA-AA-A01R-01 5 488456 488456 G A SLC9A3 Missense_Mutation p.S217L 0.35 deleterious(0) probably_damaging(0.99) TCGA-AA-A01R-01 5 5460617 5460617 G T KIAA0947 Missense_Mutation p.E390D 0.32 tolerated(0.22) benign(0.045) TCGA-AA-A01R-01 5 56170877 56170877 G A MAP3K1 Missense_Mutation p.V569I 0.31 deleterious(0.04) probably_damaging(0.969) TCGA-AA-A01R-01 5 56180651 56180651 C T MAP3K1 Missense_Mutation p.A1327V 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-AA-A01R-01 5 58511691 58511691 G A PDE4D Nonsense_Mutation p.R187* 0.07 TCGA-AA-A01R-01 5 60186734 60186734 T C ERCC8 Silent p.V341V 0.05 TCGA-AA-A01R-01 5 61645900 61645900 G A KIF2A Missense_Mutation p.R96Q 0.28 tolerated(0.23) benign(0.175) TCGA-AA-A01R-01 5 65440175 65440175 G A SREK1 5'UTR 0.35 TCGA-AA-A01R-01 5 6746494 6746494 C T PAPD7 Silent p.S221S 0.35 TCGA-AA-A01R-01 5 71015031 71015031 T C CARTPT 5'UTR 0.21 TCGA-AA-A01R-01 5 72744053 72744053 C T FOXD1 Silent p.R45R 0.43 TCGA-AA-A01R-01 5 74072584 74072584 C A NSA2 3'UTR 0.26 TCGA-AA-A01R-01 5 77330247 77330247 G A AP3B1 Silent p.S944S 0.28 TCGA-AA-A01R-01 5 77712399 77712399 G A SCAMP1 Missense_Mutation p.R90H 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 5 78752771 78752771 G A HOMER1 Missense_Mutation p.P26S 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01R-01 5 79030606 79030606 G T CMYA5 Missense_Mutation p.E2006D 0.29 benign(0.184) TCGA-AA-A01R-01 5 79372746 79372746 C T THBS4 Missense_Mutation p.T654I 0.33 deleterious(0) possibly_damaging(0.695) TCGA-AA-A01R-01 5 79815570 79815570 C T FAM151B Missense_Mutation p.R126C 0.39 deleterious(0.03) benign(0.12) TCGA-AA-A01R-01 5 81571879 81571879 T - RPS23 3'UTR 0.26 TCGA-AA-A01R-01 5 82833364 82833364 A G VCAN Silent p.T1514T 0.18 TCGA-AA-A01R-01 5 85578365 85578365 C A NBPF22P RNA 0.62 TCGA-AA-A01R-01 5 89975443 89975443 C T GPR98 Missense_Mutation p.R1841C 0.31 possibly_damaging(0.454) TCGA-AA-A01R-01 5 90059269 90059269 A G GPR98 Missense_Mutation p.T4090A 0.33 possibly_damaging(0.874) TCGA-AA-A01R-01 5 93798171 93798171 T A KIAA0825 Missense_Mutation p.I723F 0.32 deleterious(0.01) possibly_damaging(0.812) TCGA-AA-A01R-01 6 10398532 10398532 A G TFAP2A 3'UTR 0.61 TCGA-AA-A01R-01 6 105729686 105729686 G A PREP Silent p.I591I 0.29 TCGA-AA-A01R-01 6 107391251 107391251 G A BEND3 Missense_Mutation p.R382W 0.33 tolerated(0.05) possibly_damaging(0.855) TCGA-AA-A01R-01 6 10796341 10796341 G A MAK Nonsense_Mutation p.Q345* 0.09 TCGA-AA-A01R-01 6 10802142 10802142 G A MAK Nonsense_Mutation p.R272* 0.45 TCGA-AA-A01R-01 6 108985790 108985790 A C FOXO3 Missense_Mutation p.D585A 0.23 tolerated(0.35) benign(0.016) TCGA-AA-A01R-01 6 109786988 109786988 G A ZBTB24 3'UTR 0.38 TCGA-AA-A01R-01 6 110644068 110644068 C T METTL24 Missense_Mutation p.R109Q 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-AA-A01R-01 6 110988759 110988759 G A CDK19 Missense_Mutation p.R112C 0.30 deleterious(0) probably_damaging(0.989) TCGA-AA-A01R-01 6 111913040 111913040 G A TRAF3IP2 Missense_Mutation p.R84C 0.27 deleterious_low_confidence(0.01) benign(0.017) TCGA-AA-A01R-01 6 114277295 114277295 G A HDAC2 Nonsense_Mutation p.R127* 0.24 TCGA-AA-A01R-01 6 117869392 117869392 C T DCBLD1 Intron 0.36 TCGA-AA-A01R-01 6 118887261 118887261 G A CEP85L Missense_Mutation p.R154W 0.30 deleterious(0) probably_damaging(0.974) TCGA-AA-A01R-01 6 119149123 119149123 G A MCM9 Missense_Mutation p.R567W 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 6 119510998 119510998 G A MAN1A1 Silent p.I459I 0.34 TCGA-AA-A01R-01 6 128561245 128561245 G A PTPRK Nonsense_Mutation p.Q210* 0.31 TCGA-AA-A01R-01 6 132859536 132859536 C T TAAR9 Silent p.Y36Y 0.37 TCGA-AA-A01R-01 6 135516913 135516913 G A MYB Missense_Mutation p.G326R 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-AA-A01R-01 6 137519128 137519128 A G IFNGR1 3'UTR 0.41 TCGA-AA-A01R-01 6 144081724 144081724 A C PHACTR2 Missense_Mutation p.Q214P 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-AA-A01R-01 6 144508883 144508883 C T STX11 3'UTR 0.26 TCGA-AA-A01R-01 6 145160380 145160380 G A UTRN Silent p.S3379S 0.33 TCGA-AA-A01R-01 6 146266723 146266724 - T SHPRH Frame_Shift_Ins p.G458Rfs*9 0.31 TCGA-AA-A01R-01 6 147042632 147042632 G A ADGB Missense_Mutation p.E696K 0.28 deleterious(0.02) possibly_damaging(0.827) TCGA-AA-A01R-01 6 147057707 147057707 G A ADGB Silent p.Q956Q 0.25 TCGA-AA-A01R-01 6 148808782 148808782 G A SASH1 Silent p.S220S 0.30 TCGA-AA-A01R-01 6 150343322 150343322 C T RAET1L Missense_Mutation p.R48Q 0.27 tolerated(0.55) benign(0.007) TCGA-AA-A01R-01 6 151673000 151673000 C - AKAP12 Frame_Shift_Del p.P1160Lfs*18 0.26 TCGA-AA-A01R-01 6 151779639 151779639 G A C6orf211 Nonsense_Mutation p.W108* 0.33 TCGA-AA-A01R-01 6 154429207 154429207 C T OPRM1 Intron 0.34 TCGA-AA-A01R-01 6 158565405 158565405 T C SERAC1 Missense_Mutation p.I179V 0.09 tolerated(1) benign(0.002) TCGA-AA-A01R-01 6 158735122 158735122 G A TULP4 Missense_Mutation p.R25H 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A01R-01 6 160103509 160103509 G C SOD2 3'UTR 0.28 TCGA-AA-A01R-01 6 160514770 160514770 G A IGF2R Intron 0.38 TCGA-AA-A01R-01 6 160517488 160517488 G A IGF2R Missense_Mutation p.V2225M 0.35 tolerated(0.06) probably_damaging(0.995) TCGA-AA-A01R-01 6 160551194 160551194 C T SLC22A1 Missense_Mutation p.A157V 0.27 tolerated(1) benign(0.001) TCGA-AA-A01R-01 6 161470128 161470128 G A MAP3K4 Missense_Mutation p.R275Q 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A01R-01 6 163987695 163987695 T - QKI Intron 0.20 TCGA-AA-A01R-01 6 167352449 167352449 G A RNASET2 Missense_Mutation p.A127V 0.35 tolerated(0.29) benign(0.053) TCGA-AA-A01R-01 6 168999659 168999659 C T SMOC2 Missense_Mutation p.R278C 0.27 deleterious(0) probably_damaging(0.961) TCGA-AA-A01R-01 6 169053754 169053754 G A SMOC2 Silent p.R388R 0.27 TCGA-AA-A01R-01 6 24423365 24423365 A G MRS2 Intron 0.21 TCGA-AA-A01R-01 6 25966902 25966902 A C TRIM38 Missense_Mutation p.Q51P 0.20 tolerated(0.25) benign(0.021) TCGA-AA-A01R-01 6 25983838 25983838 T C TRIM38 Missense_Mutation p.S441P 0.11 deleterious(0) probably_damaging(0.995) TCGA-AA-A01R-01 6 26017597 26017597 C A HIST1H1A Missense_Mutation p.G122C 0.68 deleterious(0.04) unknown(0) TCGA-AA-A01R-01 6 26158515 26158515 G A HIST1H2BD Missense_Mutation p.V40M 0.63 tolerated_low_confidence(0.16) benign(0.02) TCGA-AA-A01R-01 6 26271298 26271298 A G HIST1H3G Silent p.F105F 0.15 TCGA-AA-A01R-01 6 26374575 26374575 G A BTN3A2 Missense_Mutation p.D329N 0.65 tolerated_low_confidence(0.24) benign(0.003) TCGA-AA-A01R-01 6 28268873 28268873 C T PGBD1 Silent p.S414S 0.61 TCGA-AA-A01R-01 6 28404116 28404116 G A ZSCAN23 5'UTR 0.60 TCGA-AA-A01R-01 6 2892113 2892113 A G SERPINB9 Missense_Mutation p.L226P 0.46 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 6 29012249 29012249 C T OR2W1 Missense_Mutation p.R235Q 0.26 tolerated(0.34) benign(0.011) TCGA-AA-A01R-01 6 30136199 30136199 G T TRIM15 Missense_Mutation p.K200N 0.16 deleterious(0.01) possibly_damaging(0.503) TCGA-AA-A01R-01 6 30297258 30297258 G A TRIM39 Missense_Mutation p.R55H 0.23 tolerated(0.12) possibly_damaging(0.58) TCGA-AA-A01R-01 6 30856994 30856994 C T DDR1 Silent p.D68D 0.19 TCGA-AA-A01R-01 6 31627955 31627955 A G C6orf47 5'UTR 0.26 TCGA-AA-A01R-01 6 31747397 31747397 C T VARS Silent p.P1092P 0.25 TCGA-AA-A01R-01 6 31785598 31785598 G A HSPA1A 3'UTR 0.22 TCGA-AA-A01R-01 6 31895931 31895931 G A CFB Silent p.A82A 0.77 TCGA-AA-A01R-01 6 31936247 31936247 C T SKIV2L Missense_Mutation p.R1001W 0.16 deleterious(0) probably_damaging(0.971) TCGA-AA-A01R-01 6 32010352 32010352 G A TNXB Silent p.C459C 0.57 TCGA-AA-A01R-01 6 32064566 32064566 C T TNXB Missense_Mutation p.G355D 0.08 probably_damaging(0.996) TCGA-AA-A01R-01 6 3225820 3225820 C T TUBB2B Missense_Mutation p.S168N 0.13 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-AA-A01R-01 6 33170839 33170839 G A SLC39A7 Missense_Mutation p.G365R 0.57 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 6 33219690 33219690 T A VPS52 Missense_Mutation p.E618V 0.18 deleterious(0) possibly_damaging(0.594) TCGA-AA-A01R-01 6 33286559 33286559 G A DAXX Silent p.C728C 0.56 TCGA-AA-A01R-01 6 33406568 33406568 T G SYNGAP1 Silent p.A516A 0.06 TCGA-AA-A01R-01 6 348125 348125 G A DUSP22 Missense_Mutation p.V96M 0.39 deleterious(0) probably_damaging(0.993) TCGA-AA-A01R-01 6 35056460 35056460 C T ANKS1A 3'UTR 0.24 TCGA-AA-A01R-01 6 35258057 35258057 C T ZNF76 Silent p.S149S 0.17 TCGA-AA-A01R-01 6 35260380 35260380 C T ZNF76 Silent p.T327T 0.58 TCGA-AA-A01R-01 6 35444120 35444120 C A TEAD3 Nonsense_Mutation p.E229* 0.47 TCGA-AA-A01R-01 6 35773652 35773652 G A LHFPL5 Missense_Mutation p.V69M 0.20 tolerated(0.06) possibly_damaging(0.629) TCGA-AA-A01R-01 6 35923016 35923016 C T SLC26A8 Silent p.A715A 0.57 TCGA-AA-A01R-01 6 37284924 37284924 T C TBC1D22B Missense_Mutation p.V444A 0.08 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 6 38885713 38885713 A T DNAH8 Missense_Mutation p.T3224S 0.31 benign(0.002) TCGA-AA-A01R-01 6 39866712 39866712 T C DAAM2 Missense_Mutation p.V893A 0.25 tolerated(1) benign(0.005) TCGA-AA-A01R-01 6 4052974 4052975 - A PRPF4B Frame_Shift_Ins p.Y781Ifs*3 0.39 TCGA-AA-A01R-01 6 41566851 41566851 G A FOXP4 3'UTR 0.19 TCGA-AA-A01R-01 6 41738516 41738516 T G FRS3 Missense_Mutation p.Q440H 0.30 tolerated(0.47) benign(0.089) TCGA-AA-A01R-01 6 41738808 41738808 G A FRS3 Missense_Mutation p.A343V 0.31 tolerated(0.24) benign(0.101) TCGA-AA-A01R-01 6 43018059 43018059 A G CUL7 Silent p.I521I 0.30 TCGA-AA-A01R-01 6 43143699 43143699 A G SRF Missense_Mutation p.M346V 0.23 tolerated(0.14) benign(0.019) TCGA-AA-A01R-01 6 43473539 43473539 G A TJAP1 Silent p.L540L 0.42 TCGA-AA-A01R-01 6 43483725 43483725 C T YIPF3 Missense_Mutation p.A64T 0.28 tolerated(0.62) benign(0.003) TCGA-AA-A01R-01 6 43501741 43501741 G A XPO5 Silent p.T782T 0.25 TCGA-AA-A01R-01 6 44200705 44200705 C T SLC29A1 Silent p.N407N 0.32 TCGA-AA-A01R-01 6 46967880 46967880 G T GPR110 3'UTR 0.33 TCGA-AA-A01R-01 6 4935881 4935881 G A CDYL Missense_Mutation p.R275H 0.43 tolerated(0.09) benign(0.01) TCGA-AA-A01R-01 6 50791468 50791468 G C TFAP2B Missense_Mutation p.V144L 0.33 tolerated(0.27) benign(0.031) TCGA-AA-A01R-01 6 51875135 51875135 A G PKHD1 Missense_Mutation p.I1908T 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-AA-A01R-01 6 51930801 51930802 - A PKHD1 Frame_Shift_Ins p.D285* 0.23 TCGA-AA-A01R-01 6 52268131 52268131 G A PAQR8 Silent p.T40T 0.15 TCGA-AA-A01R-01 6 52268178 52268178 G A PAQR8 Missense_Mutation p.R56H 0.47 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 6 52334208 52334208 A - EFHC1 Frame_Shift_Del p.D408Tfs*7 0.28 TCGA-AA-A01R-01 6 52905990 52905990 G A ICK Silent p.Y15Y 0.44 TCGA-AA-A01R-01 6 549246 549246 G A EXOC2 Missense_Mutation p.R723C 0.22 deleterious(0.03) benign(0.001) TCGA-AA-A01R-01 6 55304272 55304272 T C HMGCLL1 Missense_Mutation p.E324G 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 6 56337016 56337016 T - DST Frame_Shift_Del p.K4710Nfs*24 0.21 TCGA-AA-A01R-01 6 56471085 56471085 C T DST Intron 0.31 TCGA-AA-A01R-01 6 56480761 56480761 C T DST Intron 0.26 TCGA-AA-A01R-01 6 70423652 70423652 C T LMBRD1 Missense_Mutation p.R267H 0.27 tolerated(0.11) benign(0.058) TCGA-AA-A01R-01 6 71571705 71571705 A G SMAP1 3'UTR 0.32 TCGA-AA-A01R-01 6 72806830 72806830 C T RIMS1 Missense_Mutation p.R142C 0.33 deleterious(0) probably_damaging(0.994) TCGA-AA-A01R-01 6 74351590 74351590 A - SLC17A5 Frame_Shift_Del p.Y117Mfs*17 0.25 TCGA-AA-A01R-01 6 78172741 78172741 G A HTR1B Missense_Mutation p.S127L 0.36 tolerated(0.05) possibly_damaging(0.597) TCGA-AA-A01R-01 6 82881217 82881217 A G IBTK Silent p.P1329P 0.34 TCGA-AA-A01R-01 6 83869550 83869550 C T DOPEY1 Missense_Mutation p.T2278M 0.24 deleterious(0.01) probably_damaging(0.961) TCGA-AA-A01R-01 6 88317401 88317401 T - ORC3 Frame_Shift_Del p.L148Cfs*4 0.23 TCGA-AA-A01R-01 6 90371809 90371809 A G MDN1 Silent p.D4854D 0.29 TCGA-AA-A01R-01 6 90573531 90573531 A G CASP8AP2 RNA 0.30 TCGA-AA-A01R-01 6 90604650 90604650 C T GJA10 Missense_Mutation p.R155C 0.32 tolerated(0.2) benign(0.075) TCGA-AA-A01R-01 6 97246967 97246967 G A GPR63 Missense_Mutation p.A214V 0.25 tolerated(1) benign(0.042) TCGA-AA-A01R-01 7 100358106 100358106 C T ZAN Silent p.F1263F 0.29 TCGA-AA-A01R-01 7 100807020 100807020 G C VGF Missense_Mutation p.Q369E 0.24 tolerated_low_confidence(0.63) unknown(0) TCGA-AA-A01R-01 7 102768975 102768975 C T NAPEPLD Nonsense_Mutation p.W83* 0.29 TCGA-AA-A01R-01 7 103061308 103061308 T - SLC26A5 Frame_Shift_Del p.I57* 0.21 TCGA-AA-A01R-01 7 110764264 110764264 G C LRRN3 Missense_Mutation p.G479A 0.40 deleterious(0.01) probably_damaging(1) TCGA-AA-A01R-01 7 121944301 121944301 G T FEZF1 Missense_Mutation p.S64Y 0.31 tolerated(0.08) possibly_damaging(0.635) TCGA-AA-A01R-01 7 12376862 12376862 C T VWDE Missense_Mutation p.C1468Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 7 127014059 127014059 G A ZNF800 Missense_Mutation p.P444L 0.34 deleterious(0.04) benign(0) TCGA-AA-A01R-01 7 12727890 12727890 G T ARL4A Missense_Mutation p.G4V 0.04 tolerated(0.53) possibly_damaging(0.784) TCGA-AA-A01R-01 7 127976029 127976029 A G RBM28 Silent p.D227D 0.32 TCGA-AA-A01R-01 7 128622359 128622359 C T TNPO3 Missense_Mutation p.S601N 0.36 tolerated(0.44) benign(0.001) TCGA-AA-A01R-01 7 128852088 128852088 A C SMO Silent p.G720G 0.30 TCGA-AA-A01R-01 7 129122719 129122719 C T STRIP2 Missense_Mutation p.R696W 0.29 deleterious(0) probably_damaging(0.993) TCGA-AA-A01R-01 7 130418117 130418117 C T KLF14 Silent p.T248T 0.31 TCGA-AA-A01R-01 7 133812236 133812236 A G LRGUK Missense_Mutation p.Q39R 0.33 tolerated_low_confidence(0.2) benign(0.002) TCGA-AA-A01R-01 7 134222395 134222396 - A AKR1B10 Frame_Shift_Ins p.T244Nfs*29 0.34 TCGA-AA-A01R-01 7 135303192 135303192 A G NUP205 Silent p.G1268G 0.08 TCGA-AA-A01R-01 7 135366342 135366342 G A SLC13A4 Missense_Mutation p.A617V 0.36 deleterious(0.01) benign(0.171) TCGA-AA-A01R-01 7 136938300 136938300 C T PTN Missense_Mutation p.R67Q 0.32 deleterious(0) probably_damaging(0.978) TCGA-AA-A01R-01 7 138363728 138363728 G A SVOPL Silent p.T21T 0.29 TCGA-AA-A01R-01 7 138546200 138546200 C T KIAA1549 Silent p.S1644S 0.23 TCGA-AA-A01R-01 7 138552736 138552736 G T KIAA1549 Silent p.A1638A 0.35 TCGA-AA-A01R-01 7 138602453 138602453 G A KIAA1549 Missense_Mutation p.S640L 0.33 tolerated(0.42) benign(0.011) TCGA-AA-A01R-01 7 138603258 138603258 C T KIAA1549 Missense_Mutation p.A372T 0.46 tolerated(0.64) benign(0.003) TCGA-AA-A01R-01 7 141478773 141478773 C T TAS2R4 Missense_Mutation p.T162M 0.30 tolerated(0.13) benign(0.001) TCGA-AA-A01R-01 7 142627463 142627463 G A TRPV5 Silent p.T69T 0.28 TCGA-AA-A01R-01 7 143097002 143097002 C T EPHA1 Missense_Mutation p.A193T 0.28 deleterious(0.01) benign(0.212) TCGA-AA-A01R-01 7 143881206 143881206 C T CTAGE4 Nonsense_Mutation p.R204* 0.16 TCGA-AA-A01R-01 7 143885468 143885468 A G ARHGEF35 Silent p.A3A 0.29 TCGA-AA-A01R-01 7 144060987 144060987 G A ARHGEF5 Missense_Mutation p.A409T 0.31 tolerated(0.27) benign(0.064) TCGA-AA-A01R-01 7 146741036 146741036 G A CNTNAP2 Missense_Mutation p.R147Q 0.32 tolerated(0.43) benign(0.027) TCGA-AA-A01R-01 7 148514988 148514988 A G EZH2 Silent p.D407D 0.34 TCGA-AA-A01R-01 7 148769184 148769184 G A ZNF786 Missense_Mutation p.T227M 0.35 tolerated(0.17) benign(0.165) TCGA-AA-A01R-01 7 148801589 148801589 G A ZNF425 Silent p.R458R 0.50 TCGA-AA-A01R-01 7 149191149 149191149 G A ZNF746 Silent p.L113L 0.37 TCGA-AA-A01R-01 7 149317031 149317031 A G ZNF767 RNA 0.36 TCGA-AA-A01R-01 7 149427638 149427638 A G KRBA1 Missense_Mutation p.Y708C 0.28 tolerated(0.13) possibly_damaging(0.823) TCGA-AA-A01R-01 7 149475969 149475969 A G SSPO RNA 0.35 TCGA-AA-A01R-01 7 150163814 150163814 G A GIMAP8 Missense_Mutation p.E10K 0.30 tolerated(0.06) benign(0.442) TCGA-AA-A01R-01 7 150831565 150831565 C T AGAP3 Nonsense_Mutation p.R469* 0.42 TCGA-AA-A01R-01 7 151065005 151065005 G A NUB1 Missense_Mutation p.R373Q 0.43 tolerated(0.33) benign(0.014) TCGA-AA-A01R-01 7 151074175 151074175 C T NUB1 Missense_Mutation p.A595V 0.28 tolerated(1) possibly_damaging(0.846) TCGA-AA-A01R-01 7 156629550 156629550 G A LMBR1 Silent p.Y32Y 0.30 TCGA-AA-A01R-01 7 158457250 158457250 C T NCAPG2 Missense_Mutation p.A558T 0.32 deleterious(0.03) possibly_damaging(0.856) TCGA-AA-A01R-01 7 158457405 158457405 C T NCAPG2 Missense_Mutation p.R506H 0.34 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 7 158531716 158531716 G A ESYT2 Silent p.C782C 0.34 TCGA-AA-A01R-01 7 16666737 16666737 G A ANKMY2 Nonsense_Mutation p.R67* 0.14 TCGA-AA-A01R-01 7 18067214 18067214 G A PRPS1L1 Silent p.N64N 0.35 TCGA-AA-A01R-01 7 19184785 19184785 G A FERD3L Silent p.C67C 0.35 TCGA-AA-A01R-01 7 21630802 21630802 G A DNAH11 Splice_Site p.X759_splice 0.41 TCGA-AA-A01R-01 7 2290469 2290469 C T NUDT1 Missense_Mutation p.R125C 0.35 tolerated(0.05) benign(0.138) TCGA-AA-A01R-01 7 23165570 23165570 T - KLHL7 Intron 0.29 TCGA-AA-A01R-01 7 24756913 24756913 G A DFNA5 Silent p.Y219Y 0.27 TCGA-AA-A01R-01 7 26225319 26225319 C T NFE2L3 Silent p.T667T 0.26 TCGA-AA-A01R-01 7 2687176 2687176 C T TTYH3 Missense_Mutation p.T177M 0.57 tolerated(0.07) benign(0.189) TCGA-AA-A01R-01 7 2740161 2740161 G A AMZ1 Missense_Mutation p.A26T 0.35 tolerated(0.16) benign(0.003) TCGA-AA-A01R-01 7 2802394 2802394 C T GNA12 Intron 0.35 TCGA-AA-A01R-01 7 29152419 29152419 G A CPVL Silent p.V63V 0.30 TCGA-AA-A01R-01 7 30695267 30695267 C T CRHR2 Missense_Mutation p.V355I 0.38 tolerated(0.23) benign(0.047) TCGA-AA-A01R-01 7 32535302 32535302 C T AVL9 5'UTR 0.46 TCGA-AA-A01R-01 7 36895067 36895067 C T ELMO1 3'UTR 0.24 TCGA-AA-A01R-01 7 38254028 38254028 A G STARD3NL Missense_Mutation p.D99G 0.16 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 7 4153028 4153028 C T SDK1 Missense_Mutation p.T1181M 0.29 deleterious(0.02) possibly_damaging(0.72) TCGA-AA-A01R-01 7 41729345 41729345 T C INHBA Missense_Mutation p.K395R 0.33 tolerated(0.65) probably_damaging(0.988) TCGA-AA-A01R-01 7 4185416 4185416 G A SDK1 Missense_Mutation p.G1431S 0.43 tolerated(0.28) benign(0.107) TCGA-AA-A01R-01 7 42974676 42974676 C T MRPL32 Missense_Mutation p.R85C 0.31 deleterious(0.01) possibly_damaging(0.545) TCGA-AA-A01R-01 7 44100497 44100497 C T DBNL Silent p.Y434Y 0.39 TCGA-AA-A01R-01 7 44612026 44612026 G A DDX56 Missense_Mutation p.R189W 0.32 deleterious(0) probably_damaging(0.948) TCGA-AA-A01R-01 7 44736044 44736044 C T OGDH Silent p.D596D 0.27 TCGA-AA-A01R-01 7 44805021 44805021 G A ZMIZ2 Silent p.P695P 0.17 TCGA-AA-A01R-01 7 4800856 4800856 C T FOXK1 Missense_Mutation p.R620W 0.26 deleterious(0) probably_damaging(0.973) TCGA-AA-A01R-01 7 4841484 4841484 G - RADIL Frame_Shift_Del p.P881Lfs*110 0.23 TCGA-AA-A01R-01 7 4949627 4949627 C T MMD2 Missense_Mutation p.R165H 0.28 tolerated_low_confidence(0.21) benign(0) TCGA-AA-A01R-01 7 5112728 5112728 G T RBAK-RBAKDN 3'UTR 0.29 TCGA-AA-A01R-01 7 51203960 51203960 C T COBL Silent p.S284S 0.33 TCGA-AA-A01R-01 7 5402371 5402371 C T TNRC18 Silent p.G1435G 0.32 TCGA-AA-A01R-01 7 540801 540801 C T PDGFA Missense_Mutation p.A178T 0.33 tolerated(1) benign(0.004) TCGA-AA-A01R-01 7 55223573 55223573 G A EGFR Missense_Mutation p.D314N 0.27 tolerated(1) benign(0.074) TCGA-AA-A01R-01 7 55540719 55540719 C T VOPP1 Silent p.P116P 0.27 TCGA-AA-A01R-01 7 56142408 56142408 G A SUMF2 Missense_Mutation p.A191T 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 7 56604569 56604569 T G RP11-760D2.5 RNA 0.37 TCGA-AA-A01R-01 7 6018236 6018236 C T PMS2 Missense_Mutation p.D756N 0.17 tolerated(0.29) benign(0.19) TCGA-AA-A01R-01 7 6038813 6038813 G A PMS2 Nonsense_Mutation p.R211* 0.31 TCGA-AA-A01R-01 7 64863783 64863783 T C ZNF92 Silent p.T252T 0.33 TCGA-AA-A01R-01 7 72420847 72420847 G T POM121 3'UTR 0.40 TCGA-AA-A01R-01 7 7634699 7634699 A G MIOS Missense_Mutation p.H711R 0.31 tolerated(0.1) possibly_damaging(0.828) TCGA-AA-A01R-01 7 80418628 80418628 C T SEMA3C Missense_Mutation p.G450R 0.24 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 7 82451893 82451893 G A PCLO Silent p.S4903S 0.11 TCGA-AA-A01R-01 7 82470819 82470819 C T PCLO Missense_Mutation p.D4685N 0.33 unknown(0) TCGA-AA-A01R-01 7 82580448 82580448 C T PCLO Silent p.T3152T 0.35 TCGA-AA-A01R-01 7 86811589 86811589 G A DMTF1 Silent p.A252A 0.33 TCGA-AA-A01R-01 7 87370826 87370826 A C RUNDC3B Missense_Mutation p.K204T 0.33 deleterious(0.02) probably_damaging(0.919) TCGA-AA-A01R-01 7 89790423 89790423 A G STEAP1 Missense_Mutation p.Y130C 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 7 89874766 89874766 G A C7orf63 Missense_Mutation p.A10T 0.28 tolerated_low_confidence(0.24) possibly_damaging(0.695) TCGA-AA-A01R-01 7 91936936 91936936 A G ANKIB1 Missense_Mutation p.Y151C 0.33 deleterious(0) probably_damaging(0.992) TCGA-AA-A01R-01 7 92731748 92731748 A G SAMD9 Silent p.N1221N 0.40 TCGA-AA-A01R-01 7 92987813 92987813 T - CCDC132 3'UTR 0.25 TCGA-AA-A01R-01 7 93519504 93519504 G A TFPI2 Silent p.N72N 0.25 TCGA-AA-A01R-01 7 94540145 94540145 T G PPP1R9A Silent p.S240S 0.35 TCGA-AA-A01R-01 7 97851727 97851727 C T TECPR1 Missense_Mutation p.R1012Q 0.36 deleterious(0) probably_damaging(0.955) TCGA-AA-A01R-01 7 97984375 97984375 A G BAIAP2L1 Missense_Mutation p.S65P 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 7 98257719 98257719 C T NPTX2 Silent p.T358T 0.35 TCGA-AA-A01R-01 7 98457836 98457836 C T TMEM130 Missense_Mutation p.A173T 0.29 deleterious(0) probably_damaging(0.995) TCGA-AA-A01R-01 7 98545942 98545942 G A TRRAP Silent p.T1542T 0.30 TCGA-AA-A01R-01 7 98579550 98579550 C T TRRAP Silent p.H2924H 0.36 TCGA-AA-A01R-01 7 98591250 98591250 C T TRRAP Missense_Mutation p.R3299C 0.35 probably_damaging(0.988) TCGA-AA-A01R-01 7 98608719 98608719 G A TRRAP Silent p.P3647P 0.34 TCGA-AA-A01R-01 7 98786054 98786054 C T KPNA7 Missense_Mutation p.V257I 0.31 tolerated(0.79) benign(0.007) TCGA-AA-A01R-01 7 98985795 98985795 C T ARPC1B Silent p.C101C 0.38 TCGA-AA-A01R-01 7 99688711 99688711 G A COPS6 Silent p.A195A 0.30 TCGA-AA-A01R-01 7 99757694 99757694 G A GAL3ST4 Missense_Mutation p.R440W 0.33 deleterious(0) probably_damaging(0.971) TCGA-AA-A01R-01 7 99758106 99758106 C T GAL3ST4 Missense_Mutation p.M302I 0.31 deleterious(0.01) benign(0.11) TCGA-AA-A01R-01 8 100454693 100454693 T C VPS13B Missense_Mutation p.V1092A 0.31 deleterious(0) possibly_damaging(0.858) TCGA-AA-A01R-01 8 100829831 100829831 G A VPS13B Missense_Mutation p.V2746I 0.32 tolerated(0.1) benign(0.103) TCGA-AA-A01R-01 8 101052208 101052208 G A RGS22 Silent p.C682C 0.30 TCGA-AA-A01R-01 8 105368376 105368376 A - DCSTAMP Frame_Shift_Del p.M456* 0.22 TCGA-AA-A01R-01 8 105601180 105601180 T C LRP12 5'UTR 0.47 TCGA-AA-A01R-01 8 107782176 107782176 C T ABRA Silent p.S81S 0.30 TCGA-AA-A01R-01 8 110984616 110984616 T C KCNV1 Missense_Mutation p.I288V 0.25 tolerated(1) benign(0.02) TCGA-AA-A01R-01 8 11174117 11174117 C T MTMR9 Intron 0.29 TCGA-AA-A01R-01 8 116426316 116426316 G A TRPS1 Missense_Mutation p.H1274Y 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-A01R-01 8 116599711 116599711 G A TRPS1 Silent p.G739G 0.34 TCGA-AA-A01R-01 8 117768030 117768030 A G EIF3H Missense_Mutation p.S3P 0.25 deleterious_low_confidence(0.01) benign(0.307) TCGA-AA-A01R-01 8 118812030 118812030 T C EXT1 Missense_Mutation p.Q721R 0.29 tolerated(0.8) possibly_damaging(0.704) TCGA-AA-A01R-01 8 124221769 124221769 C T FAM83A 3'UTR 0.29 TCGA-AA-A01R-01 8 13251063 13251063 G A DLC1 Missense_Mutation p.T438M 0.38 tolerated(0.24) benign(0.002) TCGA-AA-A01R-01 8 133076083 133076083 A G OC90 5'Flank 0.45 TCGA-AA-A01R-01 8 133111175 133111175 A G HHLA1 Silent p.L114L 0.27 TCGA-AA-A01R-01 8 133953756 133953756 C T TG Silent p.C1734C 0.31 TCGA-AA-A01R-01 8 13424650 13424650 C A C8orf48 Silent p.T50T 0.28 TCGA-AA-A01R-01 8 135612824 135612824 T C ZFAT Missense_Mutation p.Y777C 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 8 139164811 139164811 G A FAM135B Missense_Mutation p.T636I 0.31 tolerated(0.56) benign(0) TCGA-AA-A01R-01 8 139207506 139207506 G T FAM135B Missense_Mutation p.L290I 0.17 tolerated(0.13) benign(0.346) TCGA-AA-A01R-01 8 139833397 139833397 G A COL22A1 Silent p.Y409Y 0.34 TCGA-AA-A01R-01 8 140631062 140631062 G A KCNK9 Silent p.H188H 0.23 TCGA-AA-A01R-01 8 142229000 142229000 C T SLC45A4 Missense_Mutation p.A196T 0.39 tolerated(0.52) benign(0.011) TCGA-AA-A01R-01 8 143559548 143559548 G A BAI1 Missense_Mutation p.G463D 0.32 tolerated(0.11) benign(0) TCGA-AA-A01R-01 8 143763396 143763396 A G PSCA Missense_Mutation p.D64G 0.35 tolerated(0.09) probably_damaging(0.953) TCGA-AA-A01R-01 8 144663257 144663257 C T EEF1D Silent p.S485S 0.31 TCGA-AA-A01R-01 8 144942483 144942483 G A EPPK1 Missense_Mutation p.R1647C 0.34 possibly_damaging(0.893) TCGA-AA-A01R-01 8 144946056 144946056 C T EPPK1 Missense_Mutation p.V456I 0.33 benign(0.035) TCGA-AA-A01R-01 8 144993572 144993572 C T PLEC Missense_Mutation p.G3610S 0.30 probably_damaging(1) TCGA-AA-A01R-01 8 144994198 144994198 G A PLEC Missense_Mutation p.A3401V 0.28 benign(0.053) TCGA-AA-A01R-01 8 145623291 145623291 C T CPSF1 Missense_Mutation p.V651M 0.35 tolerated(0.05) benign(0.327) TCGA-AA-A01R-01 8 145650190 145650190 G A VPS28 Silent p.L105L 0.32 TCGA-AA-A01R-01 8 145748540 145748540 C T LRRC24 Silent p.P287P 0.29 TCGA-AA-A01R-01 8 146015242 146015242 G A RPL8 Missense_Mutation p.R241C 0.37 deleterious(0) probably_damaging(0.985) TCGA-AA-A01R-01 8 146015266 146015266 G A RPL8 Missense_Mutation p.R233C 0.38 deleterious(0.02) benign(0.026) TCGA-AA-A01R-01 8 146032884 146032884 C T ZNF517 Missense_Mutation p.H195Y 0.18 deleterious(0.04) benign(0.136) TCGA-AA-A01R-01 8 16884779 16884779 G A MICU3 5'UTR 0.30 TCGA-AA-A01R-01 8 16961932 16961932 T C MICU3 Silent p.D339D 0.38 TCGA-AA-A01R-01 8 20038485 20038485 C T SLC18A1 5'UTR 0.38 TCGA-AA-A01R-01 8 21965422 21965422 G A NUDT18 Intron 0.28 TCGA-AA-A01R-01 8 21973883 21973883 G A HR Missense_Mutation p.S1146F 0.35 tolerated(0.1) benign(0.439) TCGA-AA-A01R-01 8 22067133 22067133 C T BMP1 Silent p.C917C 0.35 TCGA-AA-A01R-01 8 22069194 22069194 C T BMP1 Nonsense_Mutation p.R972* 0.30 TCGA-AA-A01R-01 8 22412001 22412001 C A SORBS3 5'UTR 0.35 TCGA-AA-A01R-01 8 22477100 22477100 T G CCAR2 Intron 0.37 TCGA-AA-A01R-01 8 23539069 23539069 G A NKX3-1 Nonsense_Mutation p.Q124* 0.25 TCGA-AA-A01R-01 8 24344824 24344824 A T ADAM7 Missense_Mutation p.D362V 0.30 tolerated(0.29) benign(0.016) TCGA-AA-A01R-01 8 26252748 26252748 C A BNIP3L Missense_Mutation p.P96H 0.34 tolerated(0.07) probably_damaging(0.989) TCGA-AA-A01R-01 8 26484796 26484796 C T DPYSL2 Silent p.G202G 0.34 TCGA-AA-A01R-01 8 26722159 26722159 A G ADRA1A Missense_Mutation p.C110R 0.26 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 8 27398101 27398101 C A EPHX2 Missense_Mutation p.P436H 0.40 deleterious(0.02) benign(0.426) TCGA-AA-A01R-01 8 27457326 27457326 C T CLU Missense_Mutation p.E379K 0.38 tolerated(0.5) benign(0.017) TCGA-AA-A01R-01 8 27528637 27528637 T C SCARA3 Silent p.T530T 0.27 TCGA-AA-A01R-01 8 2808661 2808661 G A CSMD1 Silent p.A3392A 0.24 TCGA-AA-A01R-01 8 28608183 28608183 C T EXTL3 Missense_Mutation p.R854W 0.27 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 8 30977906 30977906 G A WRN Missense_Mutation p.V866I 0.30 tolerated(0.12) benign(0.005) TCGA-AA-A01R-01 8 32611938 32611938 G A NRG1 Missense_Mutation p.C255Y 0.29 deleterious(0) probably_damaging(0.972) TCGA-AA-A01R-01 8 37704403 37704403 A C BRF2 Missense_Mutation p.L169V 0.27 tolerated(0.15) benign(0.025) TCGA-AA-A01R-01 8 37794557 37794557 C T GOT1L1 Missense_Mutation p.V180I 0.26 tolerated(1) benign(0.006) TCGA-AA-A01R-01 8 38172292 38172292 C T WHSC1L1 Splice_Site p.X706_splice 0.36 TCGA-AA-A01R-01 8 39646227 39646227 G A ADAM2 Silent p.V201V 0.29 TCGA-AA-A01R-01 8 40532421 40532421 G A ZMAT4 Missense_Mutation p.R127W 0.16 deleterious(0.02) benign(0.394) TCGA-AA-A01R-01 8 41476486 41476486 G T AGPAT6 Missense_Mutation p.D418Y 0.34 deleterious(0) probably_damaging(0.993) TCGA-AA-A01R-01 8 48766641 48766641 T C PRKDC Intron 0.34 TCGA-AA-A01R-01 8 55060285 55060285 C T MRPL15 3'UTR 0.35 TCGA-AA-A01R-01 8 57906091 57906091 C T IMPAD1 Silent p.L18L 0.43 TCGA-AA-A01R-01 8 59535941 59535941 C T NSMAF Missense_Mutation p.A198T 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A01R-01 8 6679536 6679536 A G XKR5 RNA 0.07 TCGA-AA-A01R-01 8 68934286 68934286 A T PREX2 Missense_Mutation p.I118F 0.37 deleterious(0) possibly_damaging(0.81) TCGA-AA-A01R-01 8 69351747 69351747 A C C8orf34 Missense_Mutation p.K114T 0.33 deleterious(0) probably_damaging(0.944) TCGA-AA-A01R-01 8 70744278 70744278 G T SLCO5A1 Missense_Mutation p.L211I 0.31 tolerated(0.24) benign(0.078) TCGA-AA-A01R-01 8 72754954 72754954 G A MSC Missense_Mutation p.P188L 0.31 deleterious(0) probably_damaging(0.982) TCGA-AA-A01R-01 8 72950287 72950287 A T TRPA1 Silent p.T772T 0.31 TCGA-AA-A01R-01 8 72987577 72987577 T C TRPA1 Missense_Mutation p.E23G 0.19 tolerated(0.13) benign(0.076) TCGA-AA-A01R-01 8 73848578 73848578 C T KCNB2 Missense_Mutation p.R330W 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 8 8185246 8185246 C T SGK223 Missense_Mutation p.G1016S 0.41 probably_damaging(0.999) TCGA-AA-A01R-01 8 8185525 8185525 C T SGK223 Missense_Mutation p.V923M 0.14 probably_damaging(0.994) TCGA-AA-A01R-01 8 8234725 8234725 C T SGK223 Silent p.P398P 0.37 TCGA-AA-A01R-01 8 87226722 87226722 T A SLC7A13 Nonsense_Mutation p.R445* 0.24 TCGA-AA-A01R-01 8 88885382 88885382 A G DCAF4L2 Missense_Mutation p.V273A 0.26 deleterious(0) probably_damaging(0.963) TCGA-AA-A01R-01 8 8998765 8998765 C T PPP1R3B Missense_Mutation p.V133I 0.35 deleterious(0.03) possibly_damaging(0.775) TCGA-AA-A01R-01 8 90937786 90937786 G A OSGIN2 3'UTR 0.31 TCGA-AA-A01R-01 8 92020996 92020996 C T TMEM55A Missense_Mutation p.A172T 0.34 deleterious(0) probably_damaging(0.989) TCGA-AA-A01R-01 8 95539335 95539335 G A KIAA1429 Silent p.I379I 0.30 TCGA-AA-A01R-01 8 9912041 9912041 C A MSRA Silent p.T5T 0.33 TCGA-AA-A01R-01 8 99142440 99142440 C T POP1 Missense_Mutation p.R241W 0.28 deleterious(0) possibly_damaging(0.849) TCGA-AA-A01R-01 8 99779547 99779547 C T STK3 Missense_Mutation p.A82T 0.24 deleterious(0.02) probably_damaging(0.989) TCGA-AA-A01R-01 9 100139118 100139118 A G CCDC180 Missense_Mutation p.Q1683R 0.27 tolerated(0.19) benign(0.145) TCGA-AA-A01R-01 9 100894473 100894473 C A CORO2A Missense_Mutation p.W253C 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A01R-01 9 101785683 101785683 C T COL15A1 Silent p.D602D 0.27 TCGA-AA-A01R-01 9 101980162 101980162 C T ALG2 3'UTR 0.31 TCGA-AA-A01R-01 9 102988438 102988438 G A INVS Missense_Mutation p.R123Q 0.30 tolerated(0.1) possibly_damaging(0.883) TCGA-AA-A01R-01 9 103204373 103204373 G A MSANTD3 Silent p.A51A 0.29 TCGA-AA-A01R-01 9 107562120 107562120 C T ABCA1 Silent p.Q1641Q 0.37 TCGA-AA-A01R-01 9 107645364 107645364 C T ABCA1 Missense_Mutation p.R126H 0.32 tolerated(0.13) benign(0) TCGA-AA-A01R-01 9 108234183 108234183 A G FSD1L Splice_Site p.X114_splice 0.30 TCGA-AA-A01R-01 9 109687408 109687408 T C ZNF462 Silent p.D405D 0.29 TCGA-AA-A01R-01 9 111761423 111761423 T C CTNNAL1 Silent p.V85V 0.31 TCGA-AA-A01R-01 9 112017804 112017804 G A EPB41L4B Missense_Mutation p.R386C 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 9 112963592 112963592 G A C9orf152 Missense_Mutation p.T119M 0.34 deleterious(0) probably_damaging(0.942) TCGA-AA-A01R-01 9 115648838 115648838 G T SLC46A2 Silent p.T424T 0.38 TCGA-AA-A01R-01 9 117838850 117838850 G A TNC Silent p.L893L 0.42 TCGA-AA-A01R-01 9 119204756 119204756 G A ASTN2 Silent p.L1141L 0.33 TCGA-AA-A01R-01 9 119461145 119461145 T G TRIM32 Missense_Mutation p.V375G 0.43 deleterious(0.01) probably_damaging(0.982) TCGA-AA-A01R-01 9 124544747 124544747 C T DAB2IP Intron 0.42 TCGA-AA-A01R-01 9 124979565 124979565 C T LHX6 Missense_Mutation p.R155Q 0.24 tolerated(0.1) probably_damaging(0.999) TCGA-AA-A01R-01 9 125315558 125315558 G A OR1N2 Nonsense_Mutation p.W37* 0.23 TCGA-AA-A01R-01 9 125551894 125551894 C T OR5C1 Missense_Mutation p.A228V 0.29 deleterious(0.02) possibly_damaging(0.685) TCGA-AA-A01R-01 9 127298312 127298312 G T NR6A1 Missense_Mutation p.F308L 0.30 tolerated(0.08) benign(0.038) TCGA-AA-A01R-01 9 127789184 127789184 C T SCAI Missense_Mutation p.R163H 0.39 deleterious(0) benign(0.319) TCGA-AA-A01R-01 9 128111712 128111712 C T GAPVD1 Silent p.D1098D 0.41 TCGA-AA-A01R-01 9 128692039 128692039 C T PBX3 Nonsense_Mutation p.R208* 0.29 TCGA-AA-A01R-01 9 129596216 129596216 G A ZBTB43 3'UTR 0.39 TCGA-AA-A01R-01 9 129643017 129643017 C A ZBTB34 Missense_Mutation p.L443I 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A01R-01 9 130211595 130211595 T C RPL12 Missense_Mutation p.K86R 0.07 deleterious(0.01) benign(0.009) TCGA-AA-A01R-01 9 130289472 130289472 C T FAM129B Splice_Site p.X105_splice 0.29 TCGA-AA-A01R-01 9 130829150 130829150 G A NAIF1 Silent p.T77T 0.37 TCGA-AA-A01R-01 9 131256922 131256922 C T ODF2 Missense_Mutation p.A629V 0.40 tolerated(0.43) benign(0.021) TCGA-AA-A01R-01 9 131346164 131346164 G A SPTAN1 Silent p.S703S 0.40 TCGA-AA-A01R-01 9 131367602 131367602 C T SPTAN1 Missense_Mutation p.R1298C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 9 131403105 131403105 C T WDR34 Silent p.P100P 0.31 TCGA-AA-A01R-01 9 132084605 132084605 A C C9orf106 RNA 0.37 TCGA-AA-A01R-01 9 132576488 132576488 G A TOR1A Silent p.H254H 0.30 TCGA-AA-A01R-01 9 133342131 133342131 T C ASS1 Missense_Mutation p.M147T 0.44 tolerated(0.31) benign(0.013) TCGA-AA-A01R-01 9 135224714 135224714 G A SETX Silent p.D34D 0.43 TCGA-AA-A01R-01 9 136270388 136270388 C T C9orf96 Missense_Mutation p.P629L 0.25 tolerated(0.88) benign(0.014) TCGA-AA-A01R-01 9 136301964 136301964 C T ADAMTS13 Nonsense_Mutation p.Q442* 0.32 TCGA-AA-A01R-01 9 136501519 136501519 G A DBH Missense_Mutation p.S9N 0.17 tolerated_low_confidence(0.06) benign(0.055) TCGA-AA-A01R-01 9 136633692 136633692 C A VAV2 Missense_Mutation p.A821S 0.27 deleterious(0) probably_damaging(0.967) TCGA-AA-A01R-01 9 136906969 136906969 G A BRD3 Silent p.S440S 0.05 TCGA-AA-A01R-01 9 137655564 137655564 G T COL5A1 Missense_Mutation p.R672M 0.39 probably_damaging(0.974) TCGA-AA-A01R-01 9 137710739 137710739 G A COL5A1 Missense_Mutation p.G1462S 0.34 unknown(0) TCGA-AA-A01R-01 9 138377448 138377448 C T PPP1R26 Silent p.S364S 0.33 TCGA-AA-A01R-01 9 138379807 138379807 G A PPP1R26 Missense_Mutation p.A1151T 0.27 tolerated(0.23) benign(0) TCGA-AA-A01R-01 9 138754442 138754442 G A CAMSAP1 Nonsense_Mutation p.R227* 0.41 TCGA-AA-A01R-01 9 139371250 139371250 G A SEC16A Missense_Mutation p.A273V 0.37 tolerated(0.22) benign(0.306) TCGA-AA-A01R-01 9 139733379 139733379 C T RABL6 Silent p.G434G 0.39 TCGA-AA-A01R-01 9 139735478 139735478 C T RABL6 3'UTR 0.19 TCGA-AA-A01R-01 9 139740449 139740449 A C C9orf172 Missense_Mutation p.Y528S 0.25 deleterious(0) probably_damaging(0.953) TCGA-AA-A01R-01 9 139740869 139740869 C T C9orf172 Missense_Mutation p.A668V 0.35 tolerated(0.3) possibly_damaging(0.861) TCGA-AA-A01R-01 9 139749954 139749954 C T MAMDC4 Missense_Mutation p.R452W 0.39 deleterious(0.05) benign(0.004) TCGA-AA-A01R-01 9 140128173 140128173 C T SLC34A3 Missense_Mutation p.P282L 0.32 tolerated(0.81) benign(0) TCGA-AA-A01R-01 9 140320738 140320738 G A NOXA1 Silent p.A72A 0.36 TCGA-AA-A01R-01 9 140329507 140329507 G A ENTPD8 Silent p.T449T 0.34 TCGA-AA-A01R-01 9 140400527 140400527 C A PNPLA7 Missense_Mutation p.G412C 0.37 tolerated(0.21) benign(0.002) TCGA-AA-A01R-01 9 140416114 140416114 C T PNPLA7 Missense_Mutation p.G311S 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 9 14088154 14088154 A T NFIB 3'UTR 0.34 TCGA-AA-A01R-01 9 14146730 14146730 A G NFIB Missense_Mutation p.S295P 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-AA-A01R-01 9 15171910 15171910 T - TTC39B 3'UTR 0.26 TCGA-AA-A01R-01 9 15225991 15225991 C T TTC39B Missense_Mutation p.A99T 0.34 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-AA-A01R-01 9 15423928 15423928 T C SNAPC3 Silent p.L112L 0.33 TCGA-AA-A01R-01 9 15695249 15695249 C A CCDC171 Missense_Mutation p.A411D 0.30 deleterious(0.01) possibly_damaging(0.888) TCGA-AA-A01R-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.29 TCGA-AA-A01R-01 9 20413791 20413791 C T MLLT3 Silent p.T351T 0.29 TCGA-AA-A01R-01 9 27157989 27157989 G A TEK Silent p.P71P 0.26 TCGA-AA-A01R-01 9 2717905 2717905 G A KCNV2 Missense_Mutation p.E56K 0.29 tolerated_low_confidence(0.06) benign(0.028) TCGA-AA-A01R-01 9 2718710 2718710 C T KCNV2 Missense_Mutation p.T324M 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 9 2718982 2718982 C T KCNV2 Silent p.L415L 0.40 TCGA-AA-A01R-01 9 2811476 2811476 G A KIAA0020 Missense_Mutation p.A507V 0.30 tolerated(0.11) benign(0.013) TCGA-AA-A01R-01 9 33113848 33113848 G A B4GALT1 Missense_Mutation p.R330C 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 9 33385103 33385103 G A AQP7 Missense_Mutation p.T310M 0.29 tolerated_low_confidence(0.31) benign(0.001) TCGA-AA-A01R-01 9 33443872 33443872 C T AQP3 Missense_Mutation p.V43M 0.21 deleterious(0.03) probably_damaging(0.972) TCGA-AA-A01R-01 9 33924247 33924247 C T UBAP2 Silent p.A849A 0.35 TCGA-AA-A01R-01 9 34658543 34658543 C T IL11RA Missense_Mutation p.R225W 0.25 deleterious(0.02) possibly_damaging(0.88) TCGA-AA-A01R-01 9 35062244 35062244 C T VCP Silent p.E305E 0.27 TCGA-AA-A01R-01 9 35398614 35398614 G T UNC13B Nonsense_Mutation p.E1217* 0.35 TCGA-AA-A01R-01 9 35799675 35799675 C T NPR2 Missense_Mutation p.R312C 0.34 deleterious(0) possibly_damaging(0.849) TCGA-AA-A01R-01 9 35800154 35800154 G A NPR2 Missense_Mutation p.G375S 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-A01R-01 9 35810674 35810674 G A SPAG8 Missense_Mutation p.R349C 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 9 36122920 36122920 T G RECK Missense_Mutation p.S932A 0.35 tolerated(0.68) benign(0.006) TCGA-AA-A01R-01 9 36670999 36670999 C T MELK Missense_Mutation p.R504C 0.34 deleterious(0) possibly_damaging(0.816) TCGA-AA-A01R-01 9 36677423 36677423 T C MELK 3'UTR 0.50 TCGA-AA-A01R-01 9 37740705 37740705 C T FRMPD1 Missense_Mutation p.A727V 0.40 tolerated(0.06) benign(0.02) TCGA-AA-A01R-01 9 38396053 38396053 G A ALDH1B1 Missense_Mutation p.R103Q 0.28 tolerated(0.18) benign(0.001) TCGA-AA-A01R-01 9 38396960 38396960 C T ALDH1B1 Silent p.G405G 0.27 TCGA-AA-A01R-01 9 39085568 39085568 T C CNTNAP3 Intron 0.33 TCGA-AA-A01R-01 9 4118462 4118462 G T GLIS3 Missense_Mutation p.A339D 0.16 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 9 67786062 67786062 G A FAM27E3 Missense_Mutation p.R65W 0.19 deleterious_low_confidence(0.04) unknown(0) TCGA-AA-A01R-01 9 7103868 7103868 G A KDM4C Missense_Mutation p.V870M 0.24 tolerated(0.27) benign(0.018) TCGA-AA-A01R-01 9 71628894 71628894 C T PRKACG Missense_Mutation p.A39T 0.26 tolerated(0.11) benign(0.115) TCGA-AA-A01R-01 9 72131956 72131956 G A APBA1 Silent p.L57L 0.37 TCGA-AA-A01R-01 9 72758539 72758539 C T MAMDC2 Missense_Mutation p.S403F 0.23 tolerated(0.76) probably_damaging(0.962) TCGA-AA-A01R-01 9 72840704 72840704 T C MAMDC2 Silent p.S650S 0.29 TCGA-AA-A01R-01 9 74305071 74305071 G A TMEM2 Missense_Mutation p.T1263M 0.31 tolerated(0.12) benign(0.001) TCGA-AA-A01R-01 9 77353353 77353353 G A TRPM6 Missense_Mutation p.R1916W 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A01R-01 9 79955337 79955337 C T VPS13A Silent p.D2299D 0.31 TCGA-AA-A01R-01 9 86586984 86586984 G A HNRNPK Missense_Mutation p.R256W 0.29 tolerated(0.07) benign(0) TCGA-AA-A01R-01 9 90301507 90301507 G A DAPK1 Missense_Mutation p.V756M 0.32 tolerated(0.22) probably_damaging(0.932) TCGA-AA-A01R-01 9 90322213 90322213 G T DAPK1 Missense_Mutation p.E1409D 0.30 tolerated(0.57) benign(0.003) TCGA-AA-A01R-01 9 90500932 90500932 G A SPATA31E1 Nonsense_Mutation p.W510* 0.27 TCGA-AA-A01R-01 9 90502753 90502753 G T SPATA31E1 Silent p.P1117P 0.27 TCGA-AA-A01R-01 9 90585530 90585530 G A CDK20 Silent p.P172P 0.23 TCGA-AA-A01R-01 9 91965612 91965612 T C SECISBP2 Missense_Mutation p.V653A 0.25 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 9 91978860 91978860 C T SECISBP2 3'Flank 0.12 TCGA-AA-A01R-01 9 92006198 92006198 C T SEMA4D Missense_Mutation p.R252Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A01R-01 9 94794709 94794709 G A SPTLC1 3'UTR 0.25 TCGA-AA-A01R-01 9 96055113 96055113 G A WNK2 Missense_Mutation p.R1826Q 0.29 unknown(0) TCGA-AA-A01R-01 9 96425189 96425189 G A PHF2 Missense_Mutation p.A567T 0.35 tolerated(0.16) unknown(0) TCGA-AA-A01R-01 9 96438003 96438003 C T PHF2 Missense_Mutation p.R922C 0.28 deleterious(0) unknown(0) TCGA-AA-A01R-01 9 98278975 98278975 C T RP11-435O5.4 3'Flank 0.32 TCGA-AA-A01R-01 9 99160583 99160583 C T ZNF367 Missense_Mutation p.R145H 0.30 deleterious(0) probably_damaging(0.982) TCGA-AA-A01R-01 X 100177878 100177878 G A XKRX Missense_Mutation p.R170C 0.66 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 X 100807810 100807810 C T ARMCX1 5'UTR 0.70 TCGA-AA-A01R-01 X 102974002 102974002 G A GLRA4 Missense_Mutation p.R306W 0.66 deleterious(0) probably_damaging(0.982) TCGA-AA-A01R-01 X 105277413 105277413 C T SERPINA7 3'UTR 0.86 TCGA-AA-A01R-01 X 107225261 107225261 C T TEX13B Missense_Mutation p.E33K 0.68 deleterious(0.03) possibly_damaging(0.66) TCGA-AA-A01R-01 X 107418399 107418399 A G COL4A6 Silent p.R960R 0.56 TCGA-AA-A01R-01 X 110987999 110987999 T A ALG13 Silent p.P933P 0.48 TCGA-AA-A01R-01 X 117043552 117043552 G A KLHL13 Missense_Mutation p.R363C 0.56 tolerated(0.1) probably_damaging(0.954) TCGA-AA-A01R-01 X 118724000 118724000 C T NKRF Missense_Mutation p.R478Q 0.69 deleterious(0.02) benign(0.114) TCGA-AA-A01R-01 X 119387935 119387935 G A ZBTB33 Missense_Mutation p.G222D 0.62 tolerated(0.42) benign(0.001) TCGA-AA-A01R-01 X 125299639 125299639 C T DCAF12L2 Missense_Mutation p.R90H 0.60 tolerated(0.09) benign(0.022) TCGA-AA-A01R-01 X 125299849 125299849 G A DCAF12L2 Missense_Mutation p.A20V 0.61 deleterious_low_confidence(0.02) possibly_damaging(0.544) TCGA-AA-A01R-01 X 129629114 129629114 C T RP1-274L7.1 RNA 0.57 TCGA-AA-A01R-01 X 132833959 132833959 T C GPC3 Missense_Mutation p.H400R 0.64 tolerated(0.63) benign(0.001) TCGA-AA-A01R-01 X 133609219 133609219 G A HPRT1 Missense_Mutation p.R48H 0.52 deleterious(0.01) benign(0.117) TCGA-AA-A01R-01 X 134185171 134185171 C T FAM127B 3'UTR 0.63 TCGA-AA-A01R-01 X 134482892 134482892 T C ZNF449 Intron 0.67 TCGA-AA-A01R-01 X 134988659 134988659 C T SAGE1 Missense_Mutation p.R229C 0.32 deleterious(0.03) possibly_damaging(0.496) TCGA-AA-A01R-01 X 135764963 135764963 A G ARHGEF6 Missense_Mutation p.L478P 0.60 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 X 139038324 139038325 - T CXorf66 Frame_Shift_Ins p.H273Tfs*8 0.35 TCGA-AA-A01R-01 X 140785772 140785772 C T SPANXD Silent p.S48S 0.24 TCGA-AA-A01R-01 X 152858068 152858068 G A FAM58A Missense_Mutation p.R183C 0.66 tolerated(0.05) benign(0.049) TCGA-AA-A01R-01 X 153037462 153037462 G A PLXNB3 Silent p.T910T 0.49 TCGA-AA-A01R-01 X 153041376 153041376 G A PLXNB3 Missense_Mutation p.R1502Q 0.74 deleterious(0) possibly_damaging(0.874) TCGA-AA-A01R-01 X 153063846 153063846 C A SSR4 Silent p.I160I 0.63 TCGA-AA-A01R-01 X 153461579 153461579 C A OPN1MW 3'UTR 0.32 TCGA-AA-A01R-01 X 154507219 154507219 G A CLIC2 Silent p.Y239Y 0.78 TCGA-AA-A01R-01 X 155010467 155010468 - GCAA SPRY3 3'UTR 0.28 TCGA-AA-A01R-01 X 17746117 17746117 C T NHS Silent p.D1276D 0.66 TCGA-AA-A01R-01 X 18265952 18265952 T G SCML2 Missense_Mutation p.T503P 0.59 tolerated(0.64) benign(0) TCGA-AA-A01R-01 X 19028880 19028880 G A GPR64 Silent p.S372S 0.50 TCGA-AA-A01R-01 X 21674527 21674527 C T KLHL34 Silent p.P460P 0.59 TCGA-AA-A01R-01 X 2407595 2407595 C T ZBED1 Missense_Mutation p.S389N 0.28 tolerated(0.07) benign(0.046) TCGA-AA-A01R-01 X 24597510 24597510 G A PCYT1B Missense_Mutation p.R211C 0.66 deleterious(0) benign(0.114) TCGA-AA-A01R-01 X 26157695 26157695 G A MAGEB18 Missense_Mutation p.G198D 0.62 deleterious(0) probably_damaging(0.998) TCGA-AA-A01R-01 X 27766473 27766473 C T DCAF8L2 Silent p.S487S 0.66 TCGA-AA-A01R-01 X 30237920 30237920 T - MAGEB2 3'UTR 0.36 TCGA-AA-A01R-01 X 30873032 30873032 C T TAB3 Nonsense_Mutation p.W250* 0.66 TCGA-AA-A01R-01 X 37961665 37961665 G A SYTL5 Missense_Mutation p.R378H 0.68 tolerated(0.44) benign(0.001) TCGA-AA-A01R-01 X 44703735 44703735 G A DUSP21 Silent p.A119A 0.63 TCGA-AA-A01R-01 X 46433581 46433581 G A CHST7 Missense_Mutation p.R72Q 0.44 tolerated_low_confidence(0.45) benign(0.001) TCGA-AA-A01R-01 X 47444680 47444680 G A TIMP1 Missense_Mutation p.C93Y 0.64 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 X 47497566 47497566 G A ELK1 Missense_Mutation p.P224S 0.69 tolerated(0.1) probably_damaging(0.998) TCGA-AA-A01R-01 X 48054727 48054727 T G SSX5 Missense_Mutation p.K23T 0.61 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-AA-A01R-01 X 48650479 48650479 C A GATA1 Missense_Mutation p.P150H 0.67 deleterious(0) benign(0.063) TCGA-AA-A01R-01 X 48847367 48847367 A G GRIPAP1 Silent p.L205L 0.58 TCGA-AA-A01R-01 X 53439001 53439001 G A SMC1A Missense_Mutation p.R353W 0.68 deleterious(0) probably_damaging(0.97) TCGA-AA-A01R-01 X 55247041 55247041 G A PAGE5 Silent p.A3A 0.61 TCGA-AA-A01R-01 X 69421804 69421804 C T DGAT2L6 Silent p.A179A 0.69 TCGA-AA-A01R-01 X 69478741 69478741 C T P2RY4 Missense_Mutation p.R245H 0.68 tolerated(0.1) benign(0.12) TCGA-AA-A01R-01 X 69497289 69497289 G A ARR3 Silent p.P173P 0.69 TCGA-AA-A01R-01 X 69646848 69646848 G A GDPD2 Missense_Mutation p.R230Q 0.59 deleterious(0) probably_damaging(1) TCGA-AA-A01R-01 X 70607290 70607290 G A TAF1 Silent p.T822T 0.61 TCGA-AA-A01R-01 X 75004797 75004797 G A MAGEE2 Silent p.N30N 0.47 TCGA-AA-A01R-01 X 79698516 79698516 A C FAM46D Missense_Mutation p.K160Q 0.54 deleterious(0) probably_damaging(0.94) TCGA-AA-A01R-01 X 79979277 79979277 A - BRWD3 Frame_Shift_Del p.F540Lfs*91 0.36 TCGA-AA-A01R-01 X 86773204 86773204 A G KLHL4 Missense_Mutation p.N103S 0.62 tolerated_low_confidence(0.54) benign(0.015) TCGA-AA-A022-01 10 102676523 102676523 T C FAM178A Silent p.G127G 0.40 TCGA-AA-A022-01 10 102738534 102738534 G T MRPL43 3'Flank 0.36 TCGA-AA-A022-01 10 102849560 102849560 C A TLX1NB Nonsense_Mutation p.E35* 0.20 TCGA-AA-A022-01 10 103371405 103371405 G A FBXW4 Missense_Mutation p.R367C 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 10 103921993 103921993 C T NOLC1 Silent p.V689V 0.35 TCGA-AA-A022-01 10 104165232 104165232 T C PSD Missense_Mutation p.K733E 0.33 tolerated(0.05) probably_damaging(0.989) TCGA-AA-A022-01 10 105761238 105761238 C T SLK Nonsense_Mutation p.R301* 0.33 TCGA-AA-A022-01 10 105768031 105768031 C T SLK Nonsense_Mutation p.R901* 0.38 TCGA-AA-A022-01 10 105905244 105905244 G A WDR96 Missense_Mutation p.R1312C 0.44 tolerated(0.08) possibly_damaging(0.773) TCGA-AA-A022-01 10 106075023 106075023 C T ITPRIP Missense_Mutation p.G263R 0.41 deleterious(0) probably_damaging(0.951) TCGA-AA-A022-01 10 108923927 108923927 G A SORCS1 Missense_Mutation p.R120W 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-AA-A022-01 10 1094868 1094868 C A IDI1 Missense_Mutation p.A26S 0.50 tolerated_low_confidence(0.76) benign(0.006) TCGA-AA-A022-01 10 112054991 112054992 - T SMNDC1 Frame_Shift_Ins p.G192Rfs*12 0.23 TCGA-AA-A022-01 10 112350788 112350788 G A SMC3 Silent p.T570T 0.32 TCGA-AA-A022-01 10 112769048 112769048 G A SHOC2 Missense_Mutation p.G443S 0.38 tolerated(1) probably_damaging(0.928) TCGA-AA-A022-01 10 114925715 114925715 C A TCF7L2 Missense_Mutation p.T598N 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A022-01 10 115804701 115804701 G A ADRB1 Silent p.A270A 0.45 TCGA-AA-A022-01 10 116608480 116608480 G A FAM160B1 Missense_Mutation p.R596Q 0.31 tolerated(0.12) possibly_damaging(0.475) TCGA-AA-A022-01 10 117026461 117026461 G A ATRNL1 Missense_Mutation p.A654T 0.23 tolerated(0.09) benign(0.164) TCGA-AA-A022-01 10 120819152 120819152 G A EIF3A Missense_Mutation p.R469W 0.30 deleterious(0) unknown(0) TCGA-AA-A022-01 10 123844193 123844193 T C TACC2 Silent p.T726T 0.33 TCGA-AA-A022-01 10 124740202 124740202 G A PSTK Silent p.A69A 0.24 TCGA-AA-A022-01 10 127705753 127705753 A - ADAM12 3'UTR 0.31 TCGA-AA-A022-01 10 133058622 133058622 G A TCERG1L Silent p.D252D 0.43 TCGA-AA-A022-01 10 134623955 134623955 G A TTC40 Missense_Mutation p.A2541V 0.47 tolerated_low_confidence(0.13) benign(0.045) TCGA-AA-A022-01 10 135093332 135093332 G - TUBGCP2 Frame_Shift_Del p.Q911Kfs*25 0.22 TCGA-AA-A022-01 10 135126305 135126305 A G ZNF511 Missense_Mutation p.I232V 0.39 tolerated(0.48) benign(0.039) TCGA-AA-A022-01 10 135215082 135215082 G A MTG1 Missense_Mutation p.M187I 0.38 deleterious(0.02) benign(0.314) TCGA-AA-A022-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.29 TCGA-AA-A022-01 10 13735926 13735926 G A FRMD4A Silent p.S363S 0.41 TCGA-AA-A022-01 10 14951099 14951101 CTT - DCLRE1C In_Frame_Del p.E462del 0.27 TCGA-AA-A022-01 10 15255177 15255177 T C FAM171A1 Missense_Mutation p.T804A 0.34 tolerated(1) benign(0.003) TCGA-AA-A022-01 10 15255986 15255986 C T FAM171A1 Missense_Mutation p.R534H 0.37 tolerated(0.3) possibly_damaging(0.906) TCGA-AA-A022-01 10 17142081 17142081 G A CUBN Missense_Mutation p.A563V 0.30 tolerated(0.12) benign(0.344) TCGA-AA-A022-01 10 21845699 21845699 C A MLLT10 Intron 0.35 TCGA-AA-A022-01 10 22171213 22171214 - T DNAJC1 Frame_Shift_Ins p.Q326Tfs*4 0.22 TCGA-AA-A022-01 10 23290921 23290921 C T ARMC3 Missense_Mutation p.A500V 0.37 deleterious(0.04) benign(0.167) TCGA-AA-A022-01 10 27329038 27329038 T - ANKRD26 Frame_Shift_Del p.N744Ifs*8 0.37 TCGA-AA-A022-01 10 295088 295088 G A ZMYND11 Intron 0.28 TCGA-AA-A022-01 10 29751323 29751324 - T SVIL Frame_Shift_Ins p.N2095Kfs*36 0.19 TCGA-AA-A022-01 10 29811463 29811463 A G SVIL Missense_Mutation p.S1089P 0.34 deleterious_low_confidence(0.05) benign(0.013) TCGA-AA-A022-01 10 32306164 32306164 G A KIF5B Missense_Mutation p.R890C 0.28 deleterious(0) possibly_damaging(0.549) TCGA-AA-A022-01 10 34985345 34985345 A G PARD3 Silent p.D41D 0.37 TCGA-AA-A022-01 10 35299234 35299234 C T CUL2 3'UTR 0.35 TCGA-AA-A022-01 10 43610164 43610164 G A RET Missense_Mutation p.V706M 0.38 deleterious(0.01) possibly_damaging(0.527) TCGA-AA-A022-01 10 43882805 43882805 T C HNRNPF Missense_Mutation p.I176M 0.43 tolerated(0.08) probably_damaging(0.997) TCGA-AA-A022-01 10 47909193 47909193 C - FAM21B Frame_Shift_Del p.K257Sfs*2 0.31 TCGA-AA-A022-01 10 48390266 48390266 G T RBP3 Silent p.S204S 0.30 TCGA-AA-A022-01 10 4888083 4888083 C T AKR1E2 Intron 0.33 TCGA-AA-A022-01 10 49446107 49446107 G T FRMPD2 Missense_Mutation p.S283Y 0.33 deleterious(0) possibly_damaging(0.744) TCGA-AA-A022-01 10 50285348 50285348 C T VSTM4 Missense_Mutation p.V184M 0.37 tolerated(0.06) possibly_damaging(0.742) TCGA-AA-A022-01 10 50315806 50315806 C T VSTM4 Missense_Mutation p.R97Q 0.45 tolerated(1) benign(0.008) TCGA-AA-A022-01 10 50684305 50684305 C T ERCC6 Missense_Mutation p.V780I 0.36 tolerated(1) benign(0.002) TCGA-AA-A022-01 10 50854692 50854692 C T CHAT Missense_Mutation p.A418V 0.34 deleterious(0.02) benign(0.404) TCGA-AA-A022-01 10 5494838 5494838 C T NET1 Silent p.S183S 0.15 TCGA-AA-A022-01 10 59955944 59955944 G A IPMK Nonsense_Mutation p.R382* 0.25 TCGA-AA-A022-01 10 59986858 59986858 G A IPMK Nonsense_Mutation p.R107* 0.25 TCGA-AA-A022-01 10 60123413 60123413 T - UBE2D1 Frame_Shift_Del p.P57Rfs*22 0.26 TCGA-AA-A022-01 10 60273015 60273015 G - BICC1 Frame_Shift_Del p.A39Rfs*56 0.20 TCGA-AA-A022-01 10 60546735 60546735 T C BICC1 Missense_Mutation p.V147A 0.33 deleterious(0) probably_damaging(0.99) TCGA-AA-A022-01 10 60562922 60562922 G A BICC1 Missense_Mutation p.A701T 0.36 tolerated(0.11) probably_damaging(0.998) TCGA-AA-A022-01 10 60996335 60996335 A G PHYHIPL Silent p.V132V 0.10 TCGA-AA-A022-01 10 64973443 64973443 T C JMJD1C Silent p.L828L 0.03 TCGA-AA-A022-01 10 70404762 70404762 G A TET1 Missense_Mutation p.G759D 0.32 deleterious(0) probably_damaging(0.992) TCGA-AA-A022-01 10 71902479 71902479 C T TYSND1 Silent p.V476V 0.08 TCGA-AA-A022-01 10 72015103 72015103 C T NPFFR1 Silent p.P301P 0.59 TCGA-AA-A022-01 10 7213917 7213917 C T SFMBT2 Silent p.P785P 0.71 TCGA-AA-A022-01 10 73461946 73461946 A C CDH23 Missense_Mutation p.K447N 0.35 tolerated(0.33) benign(0.025) TCGA-AA-A022-01 10 75567929 75567929 C T NDST2 Missense_Mutation p.R73Q 0.31 tolerated(0.23) benign(0.005) TCGA-AA-A022-01 10 75609030 75609030 T C CAMK2G Missense_Mutation p.R135G 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A022-01 10 7684021 7684021 C T ITIH5 Silent p.V56V 0.37 TCGA-AA-A022-01 10 8006195 8006195 C A TAF3 Missense_Mutation p.P241H 0.27 deleterious(0) probably_damaging(0.923) TCGA-AA-A022-01 10 8100461 8100461 C T GATA3 Silent p.H145H 0.48 TCGA-AA-A022-01 10 81192473 81192473 G A ZCCHC24 Silent p.G96G 0.32 TCGA-AA-A022-01 10 82180354 82180354 C T FAM213A Missense_Mutation p.A44V 0.39 deleterious(0) probably_damaging(0.995) TCGA-AA-A022-01 10 94243045 94243045 A - IDE Frame_Shift_Del p.L569Cfs*45 0.39 TCGA-AA-A022-01 10 94836916 94836918 TTC - CYP26A1 In_Frame_Del p.L452del 0.23 TCGA-AA-A022-01 10 95372835 95372835 C - PDE6C Frame_Shift_Del p.T120Pfs*23 0.29 TCGA-AA-A022-01 10 95660637 95660637 C T SLC35G1 Missense_Mutation p.T163M 0.31 tolerated(0.29) benign(0.165) TCGA-AA-A022-01 10 96025670 96025670 G A PLCE1 Silent p.T1412T 0.36 TCGA-AA-A022-01 10 96112806 96112806 T - NOC3L Frame_Shift_Del p.K235Nfs*2 0.28 TCGA-AA-A022-01 10 96117053 96117053 C T NOC3L Missense_Mutation p.R129H 0.32 tolerated(0.3) benign(0.005) TCGA-AA-A022-01 10 96353272 96353272 C T HELLS Missense_Mutation p.T663M 0.08 tolerated(0.11) benign(0.023) TCGA-AA-A022-01 10 96454744 96454744 T C CYP2C18 Silent p.H184H 0.28 TCGA-AA-A022-01 10 99625282 99625282 G A CRTAC1 3'UTR 0.31 TCGA-AA-A022-01 11 101342866 101342866 A G TRPC6 Splice_Site p.X735_splice 0.05 TCGA-AA-A022-01 11 102220647 102220647 T C BIRC2 Missense_Mutation p.I21T 0.31 deleterious(0.03) benign(0.005) TCGA-AA-A022-01 11 102575399 102575399 A - MMP27 Frame_Shift_Del p.F70Lfs*3 0.24 TCGA-AA-A022-01 11 103047033 103047033 G T DYNC2H1 Missense_Mutation p.C1915F 0.04 possibly_damaging(0.521) TCGA-AA-A022-01 11 103228990 103228990 T - DYNC2H1 Frame_Shift_Del p.L4028Wfs*5 0.21 TCGA-AA-A022-01 11 10597936 10597936 G T MRVI1 Silent p.A894A 0.34 TCGA-AA-A022-01 11 107207381 107207381 A - CWF19L2 Frame_Shift_Del p.L754Wfs*5 0.22 TCGA-AA-A022-01 11 107578640 107578640 C T SLN Missense_Mutation p.R6Q 0.33 tolerated_low_confidence(0.38) possibly_damaging(0.553) TCGA-AA-A022-01 11 108142126 108142126 G A ATM Missense_Mutation p.A1024T 0.30 deleterious(0.01) possibly_damaging(0.493) TCGA-AA-A022-01 11 108186756 108186756 C T ATM Silent p.H2038H 0.32 TCGA-AA-A022-01 11 10823133 10823133 G A EIF4G2 Intron 0.25 TCGA-AA-A022-01 11 108348342 108348342 C T KDELC2 Missense_Mutation p.V464I 0.37 deleterious(0.01) possibly_damaging(0.644) TCGA-AA-A022-01 11 108546426 108546426 T C DDX10 Silent p.S117S 0.34 TCGA-AA-A022-01 11 1095795 1095795 C T MUC2 Silent p.R2102R 0.35 TCGA-AA-A022-01 11 111407396 111407396 T - C11orf88 Intron 0.31 TCGA-AA-A022-01 11 112046327 112046328 - T BCO2 Frame_Shift_Ins p.R4Sfs*75 0.23 TCGA-AA-A022-01 11 114320714 114320714 G A REXO2 3'UTR 0.30 TCGA-AA-A022-01 11 114392604 114392604 C T NXPE1 3'UTR 0.28 TCGA-AA-A022-01 11 114577555 114577555 C T NXPE2 Missense_Mutation p.A528V 0.24 tolerated(0.05) possibly_damaging(0.589) TCGA-AA-A022-01 11 115047097 115047097 A - CADM1 3'UTR 0.27 TCGA-AA-A022-01 11 117052529 117052529 G A SIDT2 Silent p.Q104Q 0.22 TCGA-AA-A022-01 11 118083239 118083239 C T AMICA1 Silent p.P27P 0.29 TCGA-AA-A022-01 11 118175632 118175632 G A CD3E 5'UTR 0.42 TCGA-AA-A022-01 11 118343529 118343529 C - KMT2A Frame_Shift_Del p.Q554Sfs*13 0.26 TCGA-AA-A022-01 11 119535897 119535897 C T PVRL1 Missense_Mutation p.G372S 0.39 tolerated(0.07) benign(0.028) TCGA-AA-A022-01 11 120827517 120827517 C T GRIK4 Missense_Mutation p.H577Y 0.33 deleterious(0.02) possibly_damaging(0.708) TCGA-AA-A022-01 11 120831686 120831686 G A GRIK4 Missense_Mutation p.R648H 0.09 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 11 121028656 121028656 C T TECTA Missense_Mutation p.A1471V 0.40 tolerated(0.22) benign(0.028) TCGA-AA-A022-01 11 122850030 122850030 C T BSX Missense_Mutation p.R133H 0.43 deleterious(0) probably_damaging(0.955) TCGA-AA-A022-01 11 125831661 125831661 C T CDON Missense_Mutation p.V1197I 0.35 tolerated(1) benign(0) TCGA-AA-A022-01 11 126110774 126110774 A T FAM118B Missense_Mutation p.Q58H 0.36 tolerated(0.09) benign(0.003) TCGA-AA-A022-01 11 126136150 126136150 C - SRPR Frame_Shift_Del p.Q289Sfs*36 0.33 TCGA-AA-A022-01 11 126294638 126294638 G A KIRREL3 Missense_Mutation p.T725M 0.43 tolerated(0.1) probably_damaging(0.997) TCGA-AA-A022-01 11 1269960 1269960 G T MUC5B Silent p.T3950T 0.35 TCGA-AA-A022-01 11 1272693 1272693 C T MUC5B Silent p.T4861T 0.34 TCGA-AA-A022-01 11 128781565 128781565 C A KCNJ5 Missense_Mutation p.L133I 0.33 tolerated(0.25) benign(0.431) TCGA-AA-A022-01 11 128846505 128846505 C T ARHGAP32 Missense_Mutation p.R702H 0.37 deleterious(0) possibly_damaging(0.79) TCGA-AA-A022-01 11 130066300 130066300 G A ST14 Missense_Mutation p.A394T 0.33 tolerated(0.62) benign(0.065) TCGA-AA-A022-01 11 134010644 134010644 T - JAM3 Frame_Shift_Del p.F80Lfs*21 0.31 TCGA-AA-A022-01 11 1482273 1482273 C T BRSK2 3'UTR 0.39 TCGA-AA-A022-01 11 1643055 1643055 C - KRTAP5-4 Frame_Shift_Del p.G90Afs*148 0.13 TCGA-AA-A022-01 11 1780829 1780830 - G CTSD Frame_Shift_Ins p.Q90Pfs*50 0.22 TCGA-AA-A022-01 11 20075653 20075653 G A NAV2 Silent p.T1526T 0.33 TCGA-AA-A022-01 11 20124950 20124950 C A NAV2 Missense_Mutation p.H2248Q 0.33 tolerated(0.26) benign(0.003) TCGA-AA-A022-01 11 20139919 20139919 C T NAV2 3'UTR 0.33 TCGA-AA-A022-01 11 2167538 2167538 C A INS-IGF2 3'Flank 0.50 TCGA-AA-A022-01 11 2188245 2188245 G A TH Missense_Mutation p.T269M 0.47 deleterious(0.04) probably_damaging(0.925) TCGA-AA-A022-01 11 2424486 2424486 G A TSSC4 Missense_Mutation p.C208Y 0.30 tolerated(0.08) benign(0.42) TCGA-AA-A022-01 11 24927590 24927590 C T LUZP2 Silent p.H150H 0.38 TCGA-AA-A022-01 11 27018394 27018394 T - FIBIN 3'UTR 0.20 TCGA-AA-A022-01 11 27360303 27360303 A - CCDC34 3'UTR 0.29 TCGA-AA-A022-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.24 TCGA-AA-A022-01 11 32460465 32460465 C T WT1 5'Flank 0.32 TCGA-AA-A022-01 11 33120281 33120281 A G CSTF3 Silent p.S361S 0.40 TCGA-AA-A022-01 11 34153750 34153750 C T NAT10 Silent p.Y533Y 0.30 TCGA-AA-A022-01 11 34515068 34515068 C T ELF5 Missense_Mutation p.G115S 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-AA-A022-01 11 35454205 35454206 - C PAMR1 Frame_Shift_Ins p.V638Gfs*11 0.26 TCGA-AA-A022-01 11 4510269 4510269 C A OR52K1 Missense_Mutation p.L47I 0.37 tolerated(1) benign(0.241) TCGA-AA-A022-01 11 45924292 45924292 C T MAPK8IP1 Missense_Mutation p.P325L 0.50 tolerated(0.1) benign(0.055) TCGA-AA-A022-01 11 47296553 47296553 C T MADD Missense_Mutation p.R168C 0.05 deleterious(0) possibly_damaging(0.696) TCGA-AA-A022-01 11 47460263 47460264 - C RAPSN Intron 0.31 TCGA-AA-A022-01 11 47594825 47594825 G C KBTBD4 Missense_Mutation p.T421R 0.06 tolerated(0.05) probably_damaging(0.952) TCGA-AA-A022-01 11 47804645 47804645 G A NUP160 Missense_Mutation p.H1366Y 0.32 deleterious(0.01) probably_damaging(0.922) TCGA-AA-A022-01 11 49974622 49974622 C T OR4C13 Silent p.C216C 0.36 TCGA-AA-A022-01 11 5068683 5068683 A - OR52J3 Frame_Shift_Del p.K311Nfs*? 0.14 TCGA-AA-A022-01 11 5221777 5221777 A G OR51V1 Missense_Mutation p.C52R 0.26 tolerated(0.05) possibly_damaging(0.873) TCGA-AA-A022-01 11 5264349 5264349 G T HBG1 3'Flank 0.39 TCGA-AA-A022-01 11 55653042 55653042 G A TRIM51 Silent p.T46T 0.36 TCGA-AA-A022-01 11 55653532 55653532 C T TRIM51 Intron 0.39 TCGA-AA-A022-01 11 55873046 55873046 C A OR8H2 Missense_Mutation p.H176Q 0.03 deleterious(0) benign(0.362) TCGA-AA-A022-01 11 56113775 56113775 G A OR8K1 Missense_Mutation p.M87I 0.38 deleterious_low_confidence(0.02) benign(0.144) TCGA-AA-A022-01 11 5632025 5632025 C T TRIM6 Missense_Mutation p.P335L 0.20 deleterious(0.02) benign(0.331) TCGA-AA-A022-01 11 57077118 57077119 CT - TNKS1BP1 Frame_Shift_Del p.G1023Ifs*8 0.36 TCGA-AA-A022-01 11 57080071 57080071 G A TNKS1BP1 Silent p.G697G 0.26 TCGA-AA-A022-01 11 57296238 57296238 C A TIMM10 Missense_Mutation p.Q75H 0.44 deleterious(0.03) possibly_damaging(0.88) TCGA-AA-A022-01 11 57296325 57296325 G A TIMM10 Silent p.G46G 0.40 TCGA-AA-A022-01 11 57314100 57314100 T G SMTNL1 Missense_Mutation p.F457V 0.06 deleterious(0) probably_damaging(0.994) TCGA-AA-A022-01 11 57319948 57319948 C T UBE2L6 Silent p.P115P 0.34 TCGA-AA-A022-01 11 58034331 58034332 - A OR10W1 3'UTR 0.24 TCGA-AA-A022-01 11 6048667 6048667 C T OR56A1 Missense_Mutation p.A90T 0.31 deleterious(0.04) benign(0.197) TCGA-AA-A022-01 11 61058755 61058755 C T VWCE Silent p.E92E 0.20 TCGA-AA-A022-01 11 61109940 61109940 C T DAK Silent p.H221H 0.31 TCGA-AA-A022-01 11 61183940 61183940 C T CPSF7 Missense_Mutation p.R244Q 0.41 tolerated(0.14) possibly_damaging(0.748) TCGA-AA-A022-01 11 61493538 61493538 C T DAGLA Missense_Mutation p.T207M 0.26 tolerated(0.07) possibly_damaging(0.792) TCGA-AA-A022-01 11 61563566 61563566 C G FEN1 Missense_Mutation p.R245G 0.37 tolerated(0.06) benign(0.384) TCGA-AA-A022-01 11 61632644 61632644 G A FADS2 Missense_Mutation p.R393Q 0.36 deleterious(0.02) benign(0.324) TCGA-AA-A022-01 11 62291058 62291058 T C AHNAK Missense_Mutation p.S3611G 0.30 benign(0.031) TCGA-AA-A022-01 11 62299919 62299920 - T AHNAK Frame_Shift_Ins p.I657Nfs*25 0.25 TCGA-AA-A022-01 11 62434413 62434413 C T METTL12 Nonsense_Mutation p.R205* 0.43 TCGA-AA-A022-01 11 62563395 62563396 AG - NXF1 Frame_Shift_Del p.S494Cfs*29 0.38 TCGA-AA-A022-01 11 62751092 62751092 G A SLC22A6 Missense_Mutation p.A182V 0.26 tolerated(0.4) possibly_damaging(0.79) TCGA-AA-A022-01 11 62761028 62761028 G A SLC22A8 Missense_Mutation p.T466M 0.35 tolerated(0.2) possibly_damaging(0.683) TCGA-AA-A022-01 11 63594420 63594420 G A C11orf84 Missense_Mutation p.G319R 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A022-01 11 63886076 63886079 TTTC - FLRT1 3'UTR 0.13 TCGA-AA-A022-01 11 64084572 64084574 CTC - TRMT112 In_Frame_Del p.E76del 0.26 TCGA-AA-A022-01 11 64329603 64329603 G A SLC22A11 Missense_Mutation p.G209S 0.37 tolerated(0.07) possibly_damaging(0.775) TCGA-AA-A022-01 11 64536710 64536710 C T SF1 Missense_Mutation p.R380Q 0.36 deleterious(0.02) possibly_damaging(0.685) TCGA-AA-A022-01 11 64599911 64599911 G A CDC42BPG Missense_Mutation p.R1026C 0.36 tolerated(1) benign(0.141) TCGA-AA-A022-01 11 65365989 65365989 G A MAP3K11 Missense_Mutation p.R773C 0.40 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-AA-A022-01 11 65394884 65394884 C T PCNXL3 Missense_Mutation p.A1178V 0.40 tolerated(0.39) possibly_damaging(0.825) TCGA-AA-A022-01 11 65562601 65562601 G A OVOL1 Missense_Mutation p.G198D 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 11 65685557 65685557 G A C11orf68 Silent p.R85R 0.30 TCGA-AA-A022-01 11 66190313 66190313 G A NPAS4 Missense_Mutation p.R200H 0.42 tolerated(0.12) possibly_damaging(0.793) TCGA-AA-A022-01 11 6661923 6661923 C T DCHS1 Missense_Mutation p.D308N 0.33 tolerated(0.12) possibly_damaging(0.844) TCGA-AA-A022-01 11 67021752 67021752 G A KDM2A Missense_Mutation p.R1057H 0.41 deleterious(0) probably_damaging(0.974) TCGA-AA-A022-01 11 67186363 67186363 C - CARNS1 Frame_Shift_Del p.P169Rfs*28 0.21 TCGA-AA-A022-01 11 67290769 67290769 C T CABP2 Missense_Mutation p.R10H 0.43 tolerated_low_confidence(0.18) benign(0) TCGA-AA-A022-01 11 68031177 68031177 G A C11orf24 Missense_Mutation p.A20V 0.24 tolerated(1) unknown(0) TCGA-AA-A022-01 11 68562372 68562372 A C CPT1A Missense_Mutation p.L260R 0.37 deleterious(0) possibly_damaging(0.745) TCGA-AA-A022-01 11 68748325 68748325 C T MRGPRD Missense_Mutation p.G44D 0.40 deleterious(0.05) probably_damaging(0.967) TCGA-AA-A022-01 11 6891706 6891706 T C OR10A2 Missense_Mutation p.S241P 0.30 deleterious(0.02) probably_damaging(0.93) TCGA-AA-A022-01 11 70281196 70281196 C T CTTN Silent p.D490D 0.28 TCGA-AA-A022-01 11 70331580 70331580 G A SHANK2 Silent p.G1607G 0.38 TCGA-AA-A022-01 11 70348374 70348374 G A SHANK2 Missense_Mutation p.R740W 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 11 71146564 71146564 G A DHCR7 Missense_Mutation p.P429S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A022-01 11 71277572 71277572 G T KRTAP5-10 3'UTR 0.36 TCGA-AA-A022-01 11 721589 721589 G A EPS8L2 Missense_Mutation p.D265N 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 11 72425238 72425238 G - ARAP1 Frame_Shift_Del p.P213Rfs*33 0.33 TCGA-AA-A022-01 11 73785377 73785377 C T C2CD3 Silent p.T1624T 0.36 TCGA-AA-A022-01 11 73789296 73789296 C T C2CD3 Silent p.R1489R 0.34 TCGA-AA-A022-01 11 74413952 74413952 C A CHRDL2 Missense_Mutation p.G336V 0.37 tolerated(0.42) benign(0.197) TCGA-AA-A022-01 11 75136621 75136621 G A KLHL35 Silent p.F397F 0.33 TCGA-AA-A022-01 11 76868045 76868045 C T MYO7A Missense_Mutation p.R244C 0.38 deleterious(0.01) probably_damaging(0.931) TCGA-AA-A022-01 11 77066713 77066713 G A PAK1 Nonsense_Mutation p.R258* 0.37 TCGA-AA-A022-01 11 78614422 78614422 C T TENM4 Missense_Mutation p.A214T 0.55 tolerated_low_confidence(0.07) probably_damaging(0.964) TCGA-AA-A022-01 11 83243779 83243779 G A DLG2 Missense_Mutation p.A722V 0.21 deleterious(0.01) possibly_damaging(0.775) TCGA-AA-A022-01 11 840326 840326 C T POLR2L 3'UTR 0.33 TCGA-AA-A022-01 11 86665998 86665998 G A FZD4 Missense_Mutation p.R44C 0.38 deleterious(0.01) benign(0.368) TCGA-AA-A022-01 11 9047358 9047358 G A SCUBE2 Silent p.Y858Y 0.35 TCGA-AA-A022-01 11 9080916 9080916 C T SCUBE2 Missense_Mutation p.V342M 0.29 deleterious(0.04) probably_damaging(0.958) TCGA-AA-A022-01 11 9164392 9164392 G A DENND5A Nonsense_Mutation p.R1130* 0.43 TCGA-AA-A022-01 11 92086081 92086081 T C FAT3 Missense_Mutation p.V268A 0.33 benign(0.003) TCGA-AA-A022-01 11 92565107 92565107 A G FAT3 Silent p.T3267T 0.30 TCGA-AA-A022-01 11 92616112 92616112 G A FAT3 Missense_Mutation p.V4164I 0.36 benign(0.005) TCGA-AA-A022-01 11 93469191 93469191 T - TAF1D 3'UTR 0.66 TCGA-AA-A022-01 11 9598715 9598715 C T WEE1 Missense_Mutation p.A349V 0.33 deleterious(0) probably_damaging(0.954) TCGA-AA-A022-01 12 10066192 10066192 A G CLEC2A Silent p.I166I 0.25 TCGA-AA-A022-01 12 104155174 104155174 C - STAB2 Frame_Shift_Del p.P2450Lfs*4 0.32 TCGA-AA-A022-01 12 106461470 106461470 G A NUAK1 Missense_Mutation p.R366W 0.51 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 12 106633360 106633360 C A CKAP4 Missense_Mutation p.E417D 0.50 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 12 106838352 106838352 G - POLR3B Frame_Shift_Del p.K691Nfs*7 0.18 TCGA-AA-A022-01 12 108604021 108604021 C T WSCD2 Silent p.C207C 0.36 TCGA-AA-A022-01 12 10862703 10862703 T C YBX3 Missense_Mutation p.E195G 0.55 tolerated(0.13) probably_damaging(0.993) TCGA-AA-A022-01 12 109309621 109309621 C T SVOP Missense_Mutation p.G395S 0.36 deleterious(0) possibly_damaging(0.731) TCGA-AA-A022-01 12 110017673 110017673 C T MVK Missense_Mutation p.P98L 0.53 deleterious(0.03) benign(0.022) TCGA-AA-A022-01 12 110371862 110371862 C T GIT2 Missense_Mutation p.V678I 0.22 tolerated(0.18) benign(0.008) TCGA-AA-A022-01 12 110630424 110630425 - A IFT81 Frame_Shift_Ins p.L493Tfs*7 0.27 TCGA-AA-A022-01 12 111757886 111757886 C T CUX2 Silent p.D691D 0.54 TCGA-AA-A022-01 12 111779779 111779779 C T CUX2 Missense_Mutation p.S1194L 0.04 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 12 112223124 112223124 T G ALDH2 Missense_Mutation p.D138E 0.24 tolerated(0.17) possibly_damaging(0.69) TCGA-AA-A022-01 12 113875787 113875787 C A SDSL Missense_Mutation p.P298H 0.23 tolerated(0.16) benign(0.012) TCGA-AA-A022-01 12 11420899 11420899 C T PRB3 Missense_Mutation p.R95H 0.32 tolerated(0.22) unknown(0) TCGA-AA-A022-01 12 117013714 117013714 G A MAP1LC3B2 5'UTR 0.68 TCGA-AA-A022-01 12 117274039 117274039 C T RNFT2 Silent p.C384C 0.49 TCGA-AA-A022-01 12 117476812 117476812 G A TESC 3'UTR 0.33 TCGA-AA-A022-01 12 118588768 118588768 T C TAOK3 3'UTR 0.22 TCGA-AA-A022-01 12 120806011 120806011 G - MSI1 Frame_Shift_Del p.L56* 0.25 TCGA-AA-A022-01 12 121683022 121683022 G A CAMKK2 Missense_Mutation p.R492C 0.20 deleterious(0) possibly_damaging(0.861) TCGA-AA-A022-01 12 122261617 122261617 T G SETD1B Missense_Mutation p.M1668R 0.21 unknown(0) TCGA-AA-A022-01 12 122359531 122359531 T C WDR66 Missense_Mutation p.M107T 0.21 tolerated_low_confidence(0.3) benign(0) TCGA-AA-A022-01 12 122359548 122359548 C T WDR66 Nonsense_Mutation p.Q113* 0.52 TCGA-AA-A022-01 12 122468669 122468669 G T BCL7A Silent p.T52T 0.54 TCGA-AA-A022-01 12 122689127 122689127 C A B3GNT4 5'UTR 0.57 TCGA-AA-A022-01 12 12291876 12291876 C T LRP6 Intron 0.24 TCGA-AA-A022-01 12 123480139 123480139 G A PITPNM2 Silent p.G617G 0.33 TCGA-AA-A022-01 12 124411208 124411208 C A DNAH10 Missense_Mutation p.S3864R 0.54 benign(0.261) TCGA-AA-A022-01 12 125302128 125302128 C T SCARB1 Silent p.P84P 0.25 TCGA-AA-A022-01 12 12815389 12815389 T - GPR19 5'UTR 0.20 TCGA-AA-A022-01 12 130839154 130839154 G - PIWIL1 Frame_Shift_Del p.T375Hfs*18 0.23 TCGA-AA-A022-01 12 130839451 130839451 G A PIWIL1 Missense_Mutation p.R397H 0.49 tolerated(0.11) probably_damaging(0.993) TCGA-AA-A022-01 12 130856192 130856192 T - PIWIL1 3'UTR 0.09 TCGA-AA-A022-01 12 132547132 132547133 - CAA EP400 In_Frame_Ins p.Q2748dup 0.26 TCGA-AA-A022-01 12 133197056 133197056 G A P2RX2 Missense_Mutation p.G221R 0.18 tolerated(0.12) benign(0.083) TCGA-AA-A022-01 12 13716610 13716610 C T GRIN2B Missense_Mutation p.G1188S 0.43 tolerated_low_confidence(0.51) benign(0.007) TCGA-AA-A022-01 12 15811053 15811053 G A EPS8 Missense_Mutation p.A354V 0.20 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 12 1863508 1863508 C A ADIPOR2 5'UTR 0.52 TCGA-AA-A022-01 12 248348 248348 G A IQSEC3 Missense_Mutation p.A607T 0.29 tolerated(0.2) possibly_damaging(0.821) TCGA-AA-A022-01 12 25054936 25054937 - A BCAT1 Intron 0.44 TCGA-AA-A022-01 12 27127081 27127081 C T TM7SF3 Silent p.P510P 0.53 TCGA-AA-A022-01 12 2907025 2907025 G A FKBP4 Silent p.T127T 0.49 TCGA-AA-A022-01 12 2921866 2921866 G A ITFG2 5'UTR 0.29 TCGA-AA-A022-01 12 29493951 29493951 T - ERGIC2 3'UTR 0.53 TCGA-AA-A022-01 12 309899 309899 C T SLC6A12 Missense_Mutation p.R210H 0.24 tolerated(0.11) probably_damaging(1) TCGA-AA-A022-01 12 3129823 3129823 G A TEAD4 Missense_Mutation p.A203T 0.55 tolerated(0.37) benign(0.003) TCGA-AA-A022-01 12 32893061 32893061 G T DNM1L Nonsense_Mutation p.G591* 0.26 TCGA-AA-A022-01 12 40618961 40618961 G A LRRK2 Missense_Mutation p.E10K 0.14 deleterious_low_confidence(0.01) benign(0.154) TCGA-AA-A022-01 12 40742256 40742259 AATT - LRRK2 Frame_Shift_Del p.I2111Nfs*4 0.17 TCGA-AA-A022-01 12 41957395 41957395 C T PDZRN4 Silent p.L471L 0.07 TCGA-AA-A022-01 12 42631469 42631469 G A YAF2 Silent p.C28C 0.18 TCGA-AA-A022-01 12 43777663 43777663 G A ADAMTS20 Nonsense_Mutation p.R1524* 0.62 TCGA-AA-A022-01 12 46230604 46230604 C T ARID2 Missense_Mutation p.R285W 0.23 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 12 48192379 48192379 C T HDAC7 Silent p.L105L 0.50 TCGA-AA-A022-01 12 49220217 49220217 C T CACNB3 Silent p.D270D 0.53 TCGA-AA-A022-01 12 49427936 49427937 - T KMT2D Frame_Shift_Ins p.A3552Sfs*4 0.31 TCGA-AA-A022-01 12 49431834 49431834 G - KMT2D Frame_Shift_Del p.P3102Lfs*17 0.19 TCGA-AA-A022-01 12 49432271 49432271 G T KMT2D Silent p.T2956T 0.25 TCGA-AA-A022-01 12 49433600 49433600 T C KMT2D Silent p.G2651G 0.25 TCGA-AA-A022-01 12 49445873 49445873 T C KMT2D Silent p.A531A 0.41 TCGA-AA-A022-01 12 49888628 49888628 C T SPATS2 Silent p.S123S 0.26 TCGA-AA-A022-01 12 50189330 50189330 G A NCKAP5L Silent p.C771C 0.62 TCGA-AA-A022-01 12 50294951 50294951 G A FAIM2 Missense_Mutation p.A58V 0.18 tolerated(0.16) benign(0.022) TCGA-AA-A022-01 12 50499454 50499454 G T GPD1 Missense_Mutation p.G115C 0.24 deleterious(0.01) possibly_damaging(0.768) TCGA-AA-A022-01 12 50500070 50500070 G - GPD1 Splice_Site p.X122_splice 0.29 TCGA-AA-A022-01 12 52385731 52385731 A T ACVR1B Missense_Mutation p.D490V 0.49 tolerated(1) possibly_damaging(0.887) TCGA-AA-A022-01 12 53647841 53647841 A G MFSD5 Missense_Mutation p.M515V 0.53 tolerated(0.2) benign(0.056) TCGA-AA-A022-01 12 53701367 53701367 G A AAAS Missense_Mutation p.P516L 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-AA-A022-01 12 53861091 53861091 A G PCBP2 Intron 0.48 TCGA-AA-A022-01 12 53898958 53898958 C T TARBP2 Missense_Mutation p.A218V 0.54 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 12 54117423 54117423 C A CALCOCO1 Missense_Mutation p.G135V 0.29 tolerated(0.07) possibly_damaging(0.697) TCGA-AA-A022-01 12 54635433 54635433 T - CBX5 3'UTR 0.18 TCGA-AA-A022-01 12 55038967 55038967 G A DCD Silent p.S93S 0.51 TCGA-AA-A022-01 12 551254 551254 C T CCDC77 3'UTR 0.23 TCGA-AA-A022-01 12 55367299 55367299 A G TESPA1 Silent p.N56N 0.24 TCGA-AA-A022-01 12 56115525 56115525 A G RDH5 Silent p.T121T 0.29 TCGA-AA-A022-01 12 56492543 56492543 G A ERBB3 Missense_Mutation p.G898D 0.09 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 12 56553800 56553800 A G MYL6 Missense_Mutation p.M73V 0.08 tolerated(0.1) benign(0.004) TCGA-AA-A022-01 12 56630240 56630240 A G SLC39A5 Missense_Mutation p.S336G 0.31 tolerated(0.17) benign(0.01) TCGA-AA-A022-01 12 56817204 56817204 G A TIMELESS Nonsense_Mutation p.Q716* 0.55 TCGA-AA-A022-01 12 56848402 56848402 G - MIP 5'UTR 0.17 TCGA-AA-A022-01 12 56992791 56992791 T C BAZ2A Missense_Mutation p.I1805V 0.15 deleterious(0) benign(0.416) TCGA-AA-A022-01 12 57113135 57113135 C A NACA Intron 0.25 TCGA-AA-A022-01 12 57601929 57601929 G A LRP1 Missense_Mutation p.E3990K 0.27 benign(0.243) TCGA-AA-A022-01 12 57869353 57869353 C T ARHGAP9 Missense_Mutation p.A453T 0.47 tolerated(0.1) possibly_damaging(0.867) TCGA-AA-A022-01 12 58110252 58110252 A T OS9 Missense_Mutation p.E317V 0.47 tolerated(0.07) benign(0.13) TCGA-AA-A022-01 12 63083476 63083476 T C PPM1H Intron 0.47 TCGA-AA-A022-01 12 63543865 63543865 G A AVPR1A Missense_Mutation p.T251M 0.21 deleterious(0.05) benign(0.418) TCGA-AA-A022-01 12 6443403 6443403 A G TNFRSF1A Missense_Mutation p.L16P 0.22 tolerated(0.14) benign(0.006) TCGA-AA-A022-01 12 64521663 64521663 C - SRGAP1 Frame_Shift_Del p.P856Lfs*3 0.33 TCGA-AA-A022-01 12 64521867 64521867 C T SRGAP1 Missense_Mutation p.R923W 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-AA-A022-01 12 64664422 64664422 A - C12orf56 Frame_Shift_Del p.C393Afs*23 0.14 TCGA-AA-A022-01 12 65672638 65672638 G A MSRB3 Silent p.A30A 0.28 TCGA-AA-A022-01 12 65702403 65702403 C T MSRB3 Intron 0.04 TCGA-AA-A022-01 12 658957 658957 T C B4GALNT3 Silent p.D292D 0.20 TCGA-AA-A022-01 12 6635473 6635473 C - NCAPD2 Frame_Shift_Del p.F837Sfs*36 0.36 TCGA-AA-A022-01 12 6883760 6883760 G A LAG3 Splice_Site p.X171_splice 0.58 TCGA-AA-A022-01 12 6928606 6928606 G A CD4 3'UTR 0.20 TCGA-AA-A022-01 12 6943190 6943190 G - LEPREL2 Frame_Shift_Del p.V479Cfs*59 0.18 TCGA-AA-A022-01 12 6965312 6965312 C T USP5 Missense_Mutation p.R146W 0.27 deleterious(0.01) possibly_damaging(0.859) TCGA-AA-A022-01 12 69656322 69656322 G A CPSF6 Missense_Mutation p.E547K 0.28 tolerated_low_confidence(0.22) unknown(0) TCGA-AA-A022-01 12 6968704 6968704 G A USP5 Missense_Mutation p.V377M 0.17 tolerated(1) benign(0.101) TCGA-AA-A022-01 12 7067210 7067210 C T PTPN6 Silent p.H445H 0.34 TCGA-AA-A022-01 12 7249035 7249035 C T C1RL Silent p.V472V 0.60 TCGA-AA-A022-01 12 74934651 74934651 C - ATXN7L3B 3'UTR 0.23 TCGA-AA-A022-01 12 75897733 75897734 - T KRR1 Frame_Shift_Ins p.T261Nfs*3 0.22 TCGA-AA-A022-01 12 76424919 76424919 C T PHLDA1 Silent p.Q201Q 0.44 TCGA-AA-A022-01 12 7647955 7647955 C T CD163 Missense_Mutation p.R381H 0.31 tolerated(0.18) benign(0.179) TCGA-AA-A022-01 12 81593148 81593148 C T ACSS3 Nonsense_Mutation p.R427* 0.23 TCGA-AA-A022-01 12 81762908 81762908 C A PPFIA2 Missense_Mutation p.K444N 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A022-01 12 89743266 89743266 G A DUSP6 Missense_Mutation p.T304I 0.25 deleterious(0.02) possibly_damaging(0.818) TCGA-AA-A022-01 12 89865994 89865994 A C POC1B Missense_Mutation p.W171G 0.48 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 12 91365698 91365698 C T EPYC Missense_Mutation p.R194Q 0.24 tolerated(1) benign(0.022) TCGA-AA-A022-01 12 91502246 91502246 G T LUM Missense_Mutation p.L171M 0.28 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 12 94543431 94543431 C T PLXNC1 Silent p.G228G 0.50 TCGA-AA-A022-01 12 95603281 95603281 C T FGD6 Silent p.E593E 0.05 TCGA-AA-A022-01 12 95604071 95604071 C T FGD6 Missense_Mutation p.C330Y 0.27 tolerated_low_confidence(1) benign(0) TCGA-AA-A022-01 12 95922601 95922601 C T USP44 Missense_Mutation p.V536I 0.28 tolerated(0.15) benign(0.005) TCGA-AA-A022-01 12 96350699 96350699 C T AMDHD1 Silent p.I182I 0.52 TCGA-AA-A022-01 12 96370437 96370437 G A HAL Missense_Mutation p.R568C 0.18 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 13 100196154 100196154 A G TM9SF2 Missense_Mutation p.H352R 0.09 deleterious(0) probably_damaging(0.948) TCGA-AA-A022-01 13 101910916 101910916 G A NALCN Missense_Mutation p.R382W 0.33 deleterious(0) possibly_damaging(0.696) TCGA-AA-A022-01 13 101944633 101944633 C T NALCN Missense_Mutation p.R295H 0.36 deleterious(0.04) probably_damaging(0.93) TCGA-AA-A022-01 13 102368097 102368097 G T ITGBL1 3'UTR 0.34 TCGA-AA-A022-01 13 110814734 110814734 C - COL4A1 Frame_Shift_Del p.P1437Qfs*12 0.10 TCGA-AA-A022-01 13 111532439 111532439 C T ANKRD10 Missense_Mutation p.V270I 0.49 tolerated(0.36) benign(0.164) TCGA-AA-A022-01 13 111935663 111935663 C T ARHGEF7 Missense_Mutation p.R656W 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 13 113556574 113556575 - C MCF2L Frame_Shift_Ins p.Q22Tfs*5 0.22 TCGA-AA-A022-01 13 113718650 113718650 C T MCF2L Silent p.H174H 0.39 TCGA-AA-A022-01 13 113975948 113975948 G A LAMP1 Silent p.A340A 0.25 TCGA-AA-A022-01 13 114277524 114277524 T A TFDP1 Missense_Mutation p.S37T 0.34 tolerated(0.06) benign(0.009) TCGA-AA-A022-01 13 114523858 114523858 G - GAS6 Frame_Shift_Del p.V673Wfs*85 0.31 TCGA-AA-A022-01 13 114765080 114765080 T G RASA3 Missense_Mutation p.E638A 0.31 tolerated(0.37) benign(0.209) TCGA-AA-A022-01 13 115057218 115057219 - G UPF3A Frame_Shift_Ins p.E267Rfs*4 0.15 TCGA-AA-A022-01 13 115090562 115090562 G A CHAMP1 Silent p.V415V 0.32 TCGA-AA-A022-01 13 19751332 19751332 C T TUBA3C Missense_Mutation p.R264H 0.34 tolerated_low_confidence(0.06) benign(0.262) TCGA-AA-A022-01 13 23905345 23905345 T A SACS Missense_Mutation p.I4224L 0.25 benign(0.006) TCGA-AA-A022-01 13 24411877 24411877 G T MIPEP Missense_Mutation p.R453S 0.32 deleterious(0) probably_damaging(0.961) TCGA-AA-A022-01 13 24413812 24413812 A - MIPEP Frame_Shift_Del p.Q439Sfs*19 0.23 TCGA-AA-A022-01 13 25263404 25263404 A G ATP12A Missense_Mutation p.Y146C 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-AA-A022-01 13 25338341 25338341 G A RNF17 5'UTR 0.38 TCGA-AA-A022-01 13 25457445 25457445 T G CENPJ Missense_Mutation p.K1296T 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 13 27333612 27333612 C T GPR12 Missense_Mutation p.G118D 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 13 30062123 30062123 C T MTUS2 Silent p.D1172D 0.38 TCGA-AA-A022-01 13 30097525 30097525 C T SLC7A1 Silent p.T309T 0.48 TCGA-AA-A022-01 13 30098324 30098324 C T SLC7A1 Silent p.S257S 0.35 TCGA-AA-A022-01 13 30423708 30423708 A - UBL3 5'UTR 0.28 TCGA-AA-A022-01 13 32798468 32798468 C - FRY Frame_Shift_Del p.L1623Wfs*22 0.30 TCGA-AA-A022-01 13 33629273 33629273 C T KL Missense_Mutation p.R474C 0.05 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 13 37270750 37270750 G A SERTM1 3'UTR 0.37 TCGA-AA-A022-01 13 37583684 37583684 T C SUPT20H 3'UTR 0.33 TCGA-AA-A022-01 13 37607682 37607682 G A SUPT20H Missense_Mutation p.A204V 0.33 deleterious(0) possibly_damaging(0.639) TCGA-AA-A022-01 13 37622737 37622737 C T SUPT20H Splice_Site p.X2_splice 0.36 TCGA-AA-A022-01 13 39612694 39612694 G A NHLRC3 5'UTR 0.30 TCGA-AA-A022-01 13 41656934 41656935 - A WBP4 Frame_Shift_Ins p.T341Nfs*22 0.25 TCGA-AA-A022-01 13 41897288 41897288 G T NAA16 Missense_Mutation p.A167S 0.31 deleterious(0.02) possibly_damaging(0.907) TCGA-AA-A022-01 13 43148355 43148355 G A TNFSF11 5'UTR 0.44 TCGA-AA-A022-01 13 43810854 43810854 A G ENOX1 Silent p.V544V 0.41 TCGA-AA-A022-01 13 45515406 45515406 G A NUFIP1 Missense_Mutation p.R475W 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 13 46357656 46357656 G A SIAH3 Silent p.C224C 0.40 TCGA-AA-A022-01 13 49795039 49795039 C T MLNR Missense_Mutation p.P189L 0.37 tolerated(0.2) benign(0.005) TCGA-AA-A022-01 13 49854797 49854797 T C CDADC1 Missense_Mutation p.M458T 0.30 deleterious(0) possibly_damaging(0.497) TCGA-AA-A022-01 13 50235138 50235138 T G EBPL Missense_Mutation p.Q196P 0.05 tolerated(0.38) benign(0.009) TCGA-AA-A022-01 13 51855296 51855296 C T FAM124A Silent p.C551C 0.38 TCGA-AA-A022-01 13 58207547 58207547 C T PCDH17 Silent p.R289R 0.38 TCGA-AA-A022-01 13 58298770 58298770 C T PCDH17 Missense_Mutation p.T941I 0.07 tolerated(0.06) possibly_damaging(0.542) TCGA-AA-A022-01 13 58299138 58299138 C A PCDH17 Missense_Mutation p.L1064M 0.45 tolerated_low_confidence(0.07) possibly_damaging(0.592) TCGA-AA-A022-01 13 77724946 77724946 C A MYCBP2 Missense_Mutation p.A2314S 0.33 benign(0.031) TCGA-AA-A022-01 13 79175651 79175651 C T POU4F1 Missense_Mutation p.A387T 0.39 deleterious(0.01) unknown(0) TCGA-AA-A022-01 13 88331025 88331025 C A SLITRK5 3'UTR 0.38 TCGA-AA-A022-01 13 88331433 88331433 C T SLITRK5 3'UTR 0.23 TCGA-AA-A022-01 13 95727803 95727803 G A ABCC4 Missense_Mutation p.R897W 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A022-01 13 99361879 99361879 C T SLC15A1 Silent p.P338P 0.25 TCGA-AA-A022-01 13 99907704 99907704 C T GPR18 Silent p.A141A 0.35 TCGA-AA-A022-01 14 101193447 101193447 G A DLK1 Silent p.L14L 0.37 TCGA-AA-A022-01 14 101492444 101492444 C - MIR758 RNA 0.16 TCGA-AA-A022-01 14 101531951 101531951 C T MIR369 RNA 0.42 TCGA-AA-A022-01 14 102494335 102494336 - TCACAAG DYNC1H1 Frame_Shift_Ins p.K3112Hfs*3 0.14 TCGA-AA-A022-01 14 103371803 103371803 C T TRAF3 Silent p.D463D 0.39 TCGA-AA-A022-01 14 103593007 103593007 G A TNFAIP2 Silent p.G71G 0.44 TCGA-AA-A022-01 14 103998945 103998945 G A TRMT61A Missense_Mutation p.A120T 0.28 deleterious(0.01) possibly_damaging(0.743) TCGA-AA-A022-01 14 104001193 104001193 C T TRMT61A 3'UTR 0.53 TCGA-AA-A022-01 14 105196523 105196523 C T ADSSL1 Silent p.A98A 0.19 TCGA-AA-A022-01 14 105344289 105344289 G A CEP170B Missense_Mutation p.R88H 0.34 deleterious(0) possibly_damaging(0.766) TCGA-AA-A022-01 14 105409989 105409989 G A AHNAK2 Silent p.S3933S 0.23 TCGA-AA-A022-01 14 105618357 105618357 G A JAG2 Silent p.N319N 0.27 TCGA-AA-A022-01 14 105850732 105850732 G A PACS2 Missense_Mutation p.R608H 0.21 deleterious(0) probably_damaging(0.988) TCGA-AA-A022-01 14 106090965 106090965 G A IGHG4 Silent p.L278L 0.27 TCGA-AA-A022-01 14 106174413 106174413 G - IGHA1 Frame_Shift_Del p.R126Dfs*14 0.23 TCGA-AA-A022-01 14 19988227 19988227 G A POTEM 3'UTR 0.21 TCGA-AA-A022-01 14 20296502 20296502 A - OR4N2 Frame_Shift_Del p.K300Rfs*7 0.13 TCGA-AA-A022-01 14 21511564 21511564 A G RNASE7 Missense_Mutation p.Q138R 0.34 deleterious(0.04) benign(0.149) TCGA-AA-A022-01 14 21546604 21546604 G - ARHGEF40 Frame_Shift_Del p.A737Pfs*3 0.20 TCGA-AA-A022-01 14 21558908 21558908 C T ZNF219 Silent p.P652P 0.42 TCGA-AA-A022-01 14 21679573 21679573 C - HNRNPC Frame_Shift_Del p.D277Mfs*6 0.26 TCGA-AA-A022-01 14 21785844 21785844 T C RPGRIP1 Intron 0.10 TCGA-AA-A022-01 14 21861699 21861700 - GAA CHD8 In_Frame_Ins p.S2094dup 0.16 TCGA-AA-A022-01 14 23249170 23249170 G A SLC7A7 Missense_Mutation p.A197V 0.09 tolerated(0.41) benign(0.006) TCGA-AA-A022-01 14 23524047 23524047 G A CDH24 Silent p.H175H 0.44 TCGA-AA-A022-01 14 23524502 23524502 C - CDH24 Frame_Shift_Del p.A88Qfs*6 0.22 TCGA-AA-A022-01 14 24108183 24108183 G A DHRS2 Missense_Mutation p.R37Q 0.38 deleterious(0.04) benign(0.065) TCGA-AA-A022-01 14 24429200 24429200 G A DHRS4 Silent p.E132E 0.37 TCGA-AA-A022-01 14 24635385 24635385 G A IRF9 Missense_Mutation p.A388T 0.36 deleterious(0) possibly_damaging(0.849) TCGA-AA-A022-01 14 24646920 24646921 - C REC8 Frame_Shift_Ins p.E276Gfs*85 0.25 TCGA-AA-A022-01 14 24652821 24652821 C T IPO4 Missense_Mutation p.V680M 0.29 tolerated(0.05) benign(0.001) TCGA-AA-A022-01 14 24702528 24702528 C A GMPR2 Silent p.T41T 0.41 TCGA-AA-A022-01 14 26917042 26917042 C T NOVA1 3'UTR 0.37 TCGA-AA-A022-01 14 30046385 30046385 A G PRKD1 3'UTR 0.34 TCGA-AA-A022-01 14 31139601 31139601 G A SCFD1 Missense_Mutation p.S332N 0.08 tolerated(0.15) benign(0.119) TCGA-AA-A022-01 14 33408565 33408565 C T NPAS3 Nonsense_Mutation p.R15* 0.31 TCGA-AA-A022-01 14 36094636 36094636 C A RALGAPA1 Missense_Mutation p.R1781M 0.28 deleterious(0.02) possibly_damaging(0.804) TCGA-AA-A022-01 14 38725518 38725518 G A CLEC14A 5'UTR 0.36 TCGA-AA-A022-01 14 45658311 45658311 A G FANCM Missense_Mutation p.K1696E 0.04 tolerated(0.89) benign(0.055) TCGA-AA-A022-01 14 47613360 47613360 T C MDGA2 Missense_Mutation p.Y238C 0.32 deleterious(0) probably_damaging(0.994) TCGA-AA-A022-01 14 50877355 50877355 C T CDKL1 RNA 0.06 TCGA-AA-A022-01 14 51352507 51352507 C T ABHD12B Missense_Mutation p.P186S 0.29 deleterious(0) possibly_damaging(0.486) TCGA-AA-A022-01 14 51372173 51372173 G A PYGL Silent p.N827N 0.17 TCGA-AA-A022-01 14 54896992 54896992 A - CNIH1 Frame_Shift_Del p.Y132Tfs*6 0.27 TCGA-AA-A022-01 14 59112171 59112171 C T DACT1 Missense_Mutation p.A277V 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-AA-A022-01 14 59798094 59798094 T C DAAM1 Silent p.P576P 0.34 TCGA-AA-A022-01 14 63784542 63784542 G T GPHB5 RNA 0.30 TCGA-AA-A022-01 14 64669624 64669626 TGT - SYNE2 In_Frame_Del p.V6050del 0.40 TCGA-AA-A022-01 14 65032383 65032383 G A PPP1R36 Missense_Mutation p.R136Q 0.03 deleterious(0.04) possibly_damaging(0.819) TCGA-AA-A022-01 14 66958397 66958397 C T LINC00238 RNA 0.42 TCGA-AA-A022-01 14 71493585 71493585 T - PCNX Frame_Shift_Del p.F1152Lfs*23 0.19 TCGA-AA-A022-01 14 77327163 77327163 A C C14orf166B Missense_Mutation p.N411T 0.32 deleterious(0) benign(0.284) TCGA-AA-A022-01 14 86090304 86090304 C A FLRT2 3'UTR 0.27 TCGA-AA-A022-01 14 89206917 89206917 C T EML5 Splice_Site p.X176_splice 0.09 TCGA-AA-A022-01 14 89878534 89878534 G - FOXN3 Frame_Shift_Del p.P96Hfs*42 0.31 TCGA-AA-A022-01 14 90738816 90738816 G - PSMC1 3'UTR 0.12 TCGA-AA-A022-01 14 91636353 91636353 C T C14orf159 Silent p.G88G 0.42 TCGA-AA-A022-01 14 91770293 91770293 G A CCDC88C Silent p.S1129S 0.43 TCGA-AA-A022-01 14 92268600 92268600 G A TC2N Missense_Mutation p.S156L 0.37 deleterious(0.01) probably_damaging(0.957) TCGA-AA-A022-01 14 92278732 92278732 A G TC2N Silent p.F75F 0.40 TCGA-AA-A022-01 14 92472630 92472630 G A TRIP11 Silent p.L564L 0.25 TCGA-AA-A022-01 14 93483080 93483080 C T ITPK1 Missense_Mutation p.V63I 0.38 tolerated(0.38) benign(0.074) TCGA-AA-A022-01 15 101589853 101589853 G A LRRK1 Missense_Mutation p.E1102K 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A022-01 15 20488893 20488893 G T CHEK2P2 RNA 0.09 TCGA-AA-A022-01 15 23811187 23811187 G A MKRN3 Silent p.P86P 0.49 TCGA-AA-A022-01 15 23890894 23890894 G - MAGEL2 Frame_Shift_Del p.Q63Sfs*36 0.30 TCGA-AA-A022-01 15 24925731 24925732 - AG NPAP1 3'UTR 0.47 TCGA-AA-A022-01 15 27772635 27772635 C T GABRG3 Missense_Mutation p.P308S 0.46 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 15 28389859 28389859 C A HERC2 Missense_Mutation p.W3700C 0.45 probably_damaging(0.999) TCGA-AA-A022-01 15 28456263 28456263 G A HERC2 Silent p.C2318C 0.07 TCGA-AA-A022-01 15 31776859 31776859 C T OTUD7A Silent p.S473S 0.52 TCGA-AA-A022-01 15 33025337 33025337 G A GREM1 3'UTR 0.51 TCGA-AA-A022-01 15 33066543 33066543 G A FMN1 Missense_Mutation p.R1187C 0.66 deleterious(0.01) benign(0.349) TCGA-AA-A022-01 15 34015001 34015001 G - RYR3 Frame_Shift_Del p.G2237Efs*57 0.27 TCGA-AA-A022-01 15 37329122 37329122 C A MEIS2 Missense_Mutation p.G265C 0.55 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 15 42052632 42052632 C T MGA Missense_Mutation p.R2435W 0.58 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 15 42500376 42500376 G A VPS39 5'UTR 0.43 TCGA-AA-A022-01 15 43656160 43656160 G - ZSCAN29 Frame_Shift_Del p.P548Qfs*5 0.32 TCGA-AA-A022-01 15 43712881 43712881 A G TP53BP1 Missense_Mutation p.S1435P 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 15 44751367 44751367 T A CTDSPL2 Missense_Mutation p.I52N 0.62 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AA-A022-01 15 44858184 44858184 C T SPG11 Silent p.Q2289Q 0.46 TCGA-AA-A022-01 15 49118291 49118291 G A SHC4 Silent p.V590V 0.35 TCGA-AA-A022-01 15 50886719 50886719 G A TRPM7 Silent p.L1128L 0.31 TCGA-AA-A022-01 15 50926659 50926660 - G TRPM7 Frame_Shift_Ins p.V310Cfs*7 0.26 TCGA-AA-A022-01 15 54307641 54307641 A T UNC13C Silent p.T847T 0.39 TCGA-AA-A022-01 15 56209071 56209071 C T NEDD4 5'UTR 0.47 TCGA-AA-A022-01 15 57554304 57554304 C T TCF12 Missense_Mutation p.R494W 0.38 deleterious(0.03) probably_damaging(0.963) TCGA-AA-A022-01 15 58933010 58933010 G A ADAM10 Silent p.G326G 0.40 TCGA-AA-A022-01 15 59548577 59548577 C T MYO1E Missense_Mutation p.A80T 0.06 tolerated(0.06) probably_damaging(1) TCGA-AA-A022-01 15 60740186 60740187 - T NARG2 Frame_Shift_Ins p.R760Tfs*25 0.23 TCGA-AA-A022-01 15 65497705 65497705 C T CILP Missense_Mutation p.R175H 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 15 65621765 65621765 G - IGDCC3 Frame_Shift_Del p.P723Rfs*37 0.24 TCGA-AA-A022-01 15 65868689 65868689 A G PTPLAD1 Missense_Mutation p.Y354C 0.08 deleterious(0) unknown(0) TCGA-AA-A022-01 15 68118544 68118544 G A SKOR1 Silent p.T312T 0.41 TCGA-AA-A022-01 15 71535345 71535346 - G THSD4 Frame_Shift_Ins p.A276Gfs*36 0.23 TCGA-AA-A022-01 15 72558286 72558286 T C PARP6 Missense_Mutation p.D43G 0.39 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 15 74427014 74427014 G A ISLR2 Missense_Mutation p.R640H 0.33 tolerated(0.61) benign(0.007) TCGA-AA-A022-01 15 74627438 74627438 C - CCDC33 Intron 0.23 TCGA-AA-A022-01 15 74912558 74912558 G A CLK3 Missense_Mutation p.A269T 0.26 tolerated(0.14) benign(0.013) TCGA-AA-A022-01 15 74963986 74963986 A G EDC3 Silent p.N98N 0.33 TCGA-AA-A022-01 15 75133824 75133824 G A ULK3 Missense_Mutation p.R131W 0.29 deleterious(0.01) possibly_damaging(0.713) TCGA-AA-A022-01 15 75137290 75137292 GGA - SCAMP2 3'UTR 0.25 TCGA-AA-A022-01 15 75182874 75182874 C A MPI Missense_Mutation p.P8Q 0.38 tolerated(0.07) benign(0.038) TCGA-AA-A022-01 15 75499290 75499290 G A C15orf39 Missense_Mutation p.A301T 0.08 tolerated(0.28) benign(0.002) TCGA-AA-A022-01 15 75500918 75500918 C T C15orf39 Silent p.F843F 0.18 TCGA-AA-A022-01 15 75798052 75798052 C T PTPN9 Missense_Mutation p.R311H 0.38 deleterious(0) benign(0.344) TCGA-AA-A022-01 15 78894141 78894143 GAG - CHRNA3 In_Frame_Del p.L281del 0.34 TCGA-AA-A022-01 15 78917374 78917374 T C CHRNB4 3'UTR 0.30 TCGA-AA-A022-01 15 79589719 79589719 T C ANKRD34C 3'UTR 0.35 TCGA-AA-A022-01 15 80467356 80467356 A G FAH Splice_Site p.X280_splice 0.34 TCGA-AA-A022-01 15 81172105 81172105 G A KIAA1199 Missense_Mutation p.R97Q 0.40 deleterious(0) probably_damaging(0.961) TCGA-AA-A022-01 15 81173368 81173368 C T KIAA1199 Missense_Mutation p.P170S 0.35 tolerated(0.43) probably_damaging(0.999) TCGA-AA-A022-01 15 82335970 82335970 C - MEX3B Frame_Shift_Del p.G414Vfs*113 0.17 TCGA-AA-A022-01 15 83499629 83499629 A T WHAMM Silent p.P640P 0.40 TCGA-AA-A022-01 15 85326762 85326762 G A ZNF592 Missense_Mutation p.A286T 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-AA-A022-01 15 88472523 88472523 G A NTRK3 Nonsense_Mutation p.R678* 0.37 TCGA-AA-A022-01 15 89417739 89417739 C T ACAN 3'UTR 0.41 TCGA-AA-A022-01 15 89760442 89760442 C T RLBP1 Silent p.A85A 0.40 TCGA-AA-A022-01 15 90146032 90146032 A C TICRR Missense_Mutation p.N858T 0.32 tolerated(0.13) benign(0.049) TCGA-AA-A022-01 15 90214736 90214736 C T PLIN1 Missense_Mutation p.A104T 0.36 deleterious(0.01) probably_damaging(1) TCGA-AA-A022-01 15 90628595 90628595 G A IDH2 Missense_Mutation p.T331M 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AA-A022-01 15 90768261 90768261 T C SEMA4B Missense_Mutation p.V419A 0.09 tolerated(0.39) probably_damaging(0.981) TCGA-AA-A022-01 15 92671719 92671719 G A SLCO3A1 Silent p.T504T 0.08 TCGA-AA-A022-01 15 93470476 93470476 G A CHD2 Missense_Mutation p.M99I 0.07 tolerated(0.4) benign(0.258) TCGA-AA-A022-01 15 93482924 93482924 G A CHD2 Missense_Mutation p.R223H 0.37 deleterious(0.01) benign(0.188) TCGA-AA-A022-01 15 93543777 93543777 G T CHD2 Missense_Mutation p.K1348N 0.07 tolerated(0.05) probably_damaging(0.995) TCGA-AA-A022-01 15 95022270 95022270 C T MCTP2 3'UTR 0.34 TCGA-AA-A022-01 15 99251018 99251018 G A IGF1R Missense_Mutation p.G108S 0.12 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 16 1033829 1033829 G A SOX8 Missense_Mutation p.R175H 0.50 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 16 10989621 10989621 G A CIITA Missense_Mutation p.A99T 0.26 deleterious(0) probably_damaging(0.915) TCGA-AA-A022-01 16 11136132 11136132 C T CLEC16A Missense_Mutation p.T561M 0.28 deleterious(0) possibly_damaging(0.77) TCGA-AA-A022-01 16 1129609 1129609 G A SSTR5 Silent p.T247T 0.37 TCGA-AA-A022-01 16 11367273 11367273 C A PRM3 Silent p.G60G 0.35 TCGA-AA-A022-01 16 1265065 1265065 C T CACNA1H Missense_Mutation p.R1675W 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 16 1306865 1306865 C T TPSD1 Silent p.L108L 0.35 TCGA-AA-A022-01 16 1389121 1389121 G A BAIAP3 Intron 0.43 TCGA-AA-A022-01 16 1576772 1576772 G A IFT140 Missense_Mutation p.R809C 0.40 deleterious(0) benign(0.159) TCGA-AA-A022-01 16 1608112 1608112 G A IFT140 Silent p.D741D 0.35 TCGA-AA-A022-01 16 16215990 16215990 C T ABCC1 Silent p.D1183D 0.22 TCGA-AA-A022-01 16 16248569 16248569 A G ABCC6 Missense_Mutation p.L1375P 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 16 16263524 16263524 C T ABCC6 Missense_Mutation p.G992R 0.42 deleterious(0) probably_damaging(0.934) TCGA-AA-A022-01 16 2002899 2002899 C T RPL3L Missense_Mutation p.C114Y 0.30 tolerated(0.06) possibly_damaging(0.525) TCGA-AA-A022-01 16 2090161 2090161 C T NTHL1 Missense_Mutation p.R263H 0.31 deleterious(0) probably_damaging(0.993) TCGA-AA-A022-01 16 21278912 21278912 C T CRYM Silent p.L212L 0.29 TCGA-AA-A022-01 16 22334201 22334201 C - POLR3E Frame_Shift_Del p.P340Lfs*35 0.23 TCGA-AA-A022-01 16 2284186 2284186 G A E4F1 Missense_Mutation p.A464T 0.59 tolerated(0.61) benign(0.002) TCGA-AA-A022-01 16 2285300 2285300 C T E4F1 Silent p.T694T 0.54 TCGA-AA-A022-01 16 2373492 2373492 C T ABCA3 Intron 0.39 TCGA-AA-A022-01 16 24196837 24196837 C T PRKCB Silent p.N557N 0.31 TCGA-AA-A022-01 16 24800858 24800858 A G TNRC6A Missense_Mutation p.S299G 0.41 tolerated(0.25) benign(0) TCGA-AA-A022-01 16 27556754 27556754 T C GTF3C1 Silent p.L104L 0.34 TCGA-AA-A022-01 16 28916197 28916197 A G RABEP2 3'UTR 0.15 TCGA-AA-A022-01 16 29883830 29883830 G A SEZ6L2 Missense_Mutation p.P836S 0.38 tolerated(0.46) benign(0.024) TCGA-AA-A022-01 16 29990778 29990778 T C TAOK2 Missense_Mutation p.Y202H 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 16 30199718 30199718 G A CORO1A Missense_Mutation p.A368T 0.62 tolerated(0.08) benign(0.176) TCGA-AA-A022-01 16 30369488 30369488 C T TBC1D10B Missense_Mutation p.R735Q 0.30 tolerated_low_confidence(0.17) benign(0.01) TCGA-AA-A022-01 16 30536607 30536607 C T ZNF768 Missense_Mutation p.G285D 0.35 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AA-A022-01 16 3063473 3063473 G A CLDN9 Missense_Mutation p.G37D 0.32 tolerated(0.11) probably_damaging(0.993) TCGA-AA-A022-01 16 3077223 3077225 CCA - THOC6 In_Frame_Del p.T253del 0.26 TCGA-AA-A022-01 16 3100090 3100090 C T MMP25 Missense_Mutation p.R105C 0.57 deleterious(0) probably_damaging(0.971) TCGA-AA-A022-01 16 31045346 31045346 T C STX4 Missense_Mutation p.S15P 0.25 tolerated(0.05) probably_damaging(0.914) TCGA-AA-A022-01 16 31098131 31098131 C - RP11-196G11.1 3'Flank 0.20 TCGA-AA-A022-01 16 31196403 31196405 GGC - FUS In_Frame_Del p.G231del 0.30 TCGA-AA-A022-01 16 31426249 31426249 C - ITGAD Frame_Shift_Del p.S742Pfs*49 0.18 TCGA-AA-A022-01 16 323530 323531 - C RGS11 Frame_Shift_Ins p.D178Gfs*50 0.17 TCGA-AA-A022-01 16 3434605 3434605 G A ZSCAN32 Missense_Mutation p.A151V 0.30 tolerated(0.38) benign(0.097) TCGA-AA-A022-01 16 3447246 3447246 G A ZSCAN32 5'UTR 0.35 TCGA-AA-A022-01 16 3658727 3658727 G A SLX4 Missense_Mutation p.A80V 0.06 deleterious(0.03) benign(0.172) TCGA-AA-A022-01 16 3778597 3778597 G A CREBBP Missense_Mutation p.R2151W 0.32 unknown(0) TCGA-AA-A022-01 16 3779309 3779309 G A CREBBP Silent p.P1913P 0.11 TCGA-AA-A022-01 16 3779534 3779534 G A CREBBP Silent p.C1838C 0.28 TCGA-AA-A022-01 16 4432695 4432695 C T VASN Missense_Mutation p.A606V 0.36 deleterious(0.04) benign(0.282) TCGA-AA-A022-01 16 4433244 4433244 G - VASN 3'UTR 0.19 TCGA-AA-A022-01 16 4700414 4700414 C - MGRN1 Frame_Shift_Del p.H48Tfs*13 0.25 TCGA-AA-A022-01 16 48201105 48201105 C T ABCC11 3'UTR 0.18 TCGA-AA-A022-01 16 4902929 4902929 C T UBN1 Missense_Mutation p.P4L 0.32 deleterious(0) benign(0.193) TCGA-AA-A022-01 16 49430486 49430486 G A C16orf78 Missense_Mutation p.D183N 0.33 deleterious(0.01) benign(0.333) TCGA-AA-A022-01 16 49433070 49433070 C T C16orf78 Missense_Mutation p.R227W 0.32 deleterious(0) possibly_damaging(0.877) TCGA-AA-A022-01 16 49670036 49670036 C T ZNF423 Missense_Mutation p.M1009I 0.31 tolerated(0.07) benign(0.109) TCGA-AA-A022-01 16 5037580 5037580 C T SEC14L5 Missense_Mutation p.T29M 0.38 deleterious(0) probably_damaging(0.976) TCGA-AA-A022-01 16 53496539 53496539 A - RBL2 Frame_Shift_Del p.R513Dfs*2 0.26 TCGA-AA-A022-01 16 55519308 55519308 C T MMP2 Silent p.D209D 0.27 TCGA-AA-A022-01 16 55855409 55855409 C - CES1 Frame_Shift_Del p.N189Tfs*28 0.15 TCGA-AA-A022-01 16 56912065 56912065 C T SLC12A3 Missense_Mutation p.A391V 0.32 tolerated(1) benign(0.396) TCGA-AA-A022-01 16 57992349 57992349 G T CNGB1 Missense_Mutation p.P268T 0.41 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AA-A022-01 16 58072231 58072231 C A MMP15 Missense_Mutation p.L125M 0.40 tolerated(0.27) benign(0.085) TCGA-AA-A022-01 16 633049 633049 T C PIGQ Silent p.A566A 0.35 TCGA-AA-A022-01 16 66420974 66420974 C T CDH5 Missense_Mutation p.A158V 0.33 tolerated(0.13) possibly_damaging(0.576) TCGA-AA-A022-01 16 66946249 66946249 C T CDH16 Missense_Mutation p.A482T 0.07 tolerated(0.19) benign(0.065) TCGA-AA-A022-01 16 67472372 67472372 A G ATP6V0D1 3'UTR 0.23 TCGA-AA-A022-01 16 67683046 67683046 G A RLTPR Silent p.A553A 0.46 TCGA-AA-A022-01 16 67917103 67917103 C T EDC4 Intron 0.26 TCGA-AA-A022-01 16 67961298 67961298 G - PSKH1 Frame_Shift_Del p.R343Lfs*2 0.25 TCGA-AA-A022-01 16 68156121 68156121 A G NFATC3 Missense_Mutation p.Q112R 0.43 tolerated(0.13) probably_damaging(0.989) TCGA-AA-A022-01 16 68721632 68721632 C T CDH3 Silent p.N596N 0.35 TCGA-AA-A022-01 16 69189846 69189846 T - CIRH1A Frame_Shift_Del p.L415Sfs*4 0.27 TCGA-AA-A022-01 16 70722098 70722098 G A VAC14 Intron 0.39 TCGA-AA-A022-01 16 70819682 70819682 C T VAC14 Missense_Mutation p.A116T 0.09 deleterious(0.01) probably_damaging(1) TCGA-AA-A022-01 16 708974 708974 G A WDR90 Missense_Mutation p.A992T 0.31 tolerated(0.1) benign(0.05) TCGA-AA-A022-01 16 70954585 70954585 C A HYDIN Missense_Mutation p.G2565V 0.40 probably_damaging(0.988) TCGA-AA-A022-01 16 70986415 70986415 C T HYDIN Missense_Mutation p.R2147H 0.26 probably_damaging(0.984) TCGA-AA-A022-01 16 71512142 71512142 T - ZNF19 Frame_Shift_Del p.N88Tfs*16 0.27 TCGA-AA-A022-01 16 71885475 71885475 C T ATXN1L Missense_Mutation p.T611M 0.28 tolerated(0.1) benign(0.013) TCGA-AA-A022-01 16 71895833 71895833 C T ZNF821 Missense_Mutation p.V144M 0.04 tolerated(0.3) benign(0.104) TCGA-AA-A022-01 16 71988068 71988068 G A PKD1L3 RNA 0.26 TCGA-AA-A022-01 16 72135074 72135074 G A DHX38 Silent p.E456E 0.34 TCGA-AA-A022-01 16 72984578 72984578 G A ZFHX3 Silent p.H1002H 0.32 TCGA-AA-A022-01 16 7637292 7637292 G A RBFOX1 Missense_Mutation p.R173Q 0.36 deleterious(0.01) possibly_damaging(0.596) TCGA-AA-A022-01 16 76483754 76483754 T C CNTNAP4 Intron 0.38 TCGA-AA-A022-01 16 76528873 76528873 C T CNTNAP4 Missense_Mutation p.S643L 0.35 tolerated(1) benign(0) TCGA-AA-A022-01 16 778935 778955 GAGGGAACAGGCTTCGGGGTG AGGGAACAGGCTTCGGGGT HAGHL Intron 0.31 TCGA-AA-A022-01 16 79632958 79632958 A C MAF Missense_Mutation p.V281G 0.51 deleterious(0.01) probably_damaging(0.974) TCGA-AA-A022-01 16 81095211 81095211 C T C16orf46 Missense_Mutation p.C248Y 0.30 deleterious(0.03) possibly_damaging(0.827) TCGA-AA-A022-01 16 83251054 83251054 C T CDH13 Silent p.S243S 0.28 TCGA-AA-A022-01 16 84030845 84030845 C T NECAB2 Missense_Mutation p.R274C 0.24 deleterious(0) possibly_damaging(0.891) TCGA-AA-A022-01 16 84255839 84255839 G T KCNG4 Missense_Mutation p.P515H 0.08 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-AA-A022-01 16 84690779 84690779 G A KLHL36 Silent p.T122T 0.42 TCGA-AA-A022-01 16 85814050 85814050 G A EMC8 Silent p.C136C 0.36 TCGA-AA-A022-01 16 87678048 87678048 G A JPH3 Silent p.P189P 0.29 TCGA-AA-A022-01 16 87678575 87678575 G A JPH3 Missense_Mutation p.R365H 0.40 tolerated(0.1) benign(0.259) TCGA-AA-A022-01 16 88504852 88504852 G - ZNF469 Frame_Shift_Del p.R3634Efs*58 0.33 TCGA-AA-A022-01 16 89289567 89289567 C T ZNF778 Silent p.D40D 0.32 TCGA-AA-A022-01 16 89289576 89289576 C A ZNF778 Silent p.T43T 0.34 TCGA-AA-A022-01 16 89805934 89805934 C T FANCA Missense_Mutation p.R1321H 0.32 tolerated(0.31) possibly_damaging(0.522) TCGA-AA-A022-01 16 9862888 9862888 G A GRIN2A Silent p.N805N 0.33 TCGA-AA-A022-01 17 10555877 10555877 G - MYH3 Frame_Shift_Del p.L70Wfs*11 0.16 TCGA-AA-A022-01 17 13400087 13400087 C T HS3ST3A1 Silent p.T216T 0.22 TCGA-AA-A022-01 17 13504345 13504345 C T HS3ST3A1 Silent p.T34T 0.21 TCGA-AA-A022-01 17 14683331 14683331 C T AC005863.1 RNA 0.36 TCGA-AA-A022-01 17 15516054 15516054 G A RP11-385D13.1 Silent p.S671S 0.30 TCGA-AA-A022-01 17 16251946 16251946 C T CENPV Missense_Mutation p.R188H 0.35 tolerated(0.11) benign(0.098) TCGA-AA-A022-01 17 16833177 16833177 G A TBC1D27 RNA 0.12 TCGA-AA-A022-01 17 17050703 17050703 T C MPRIP Splice_Site p.X425_splice 0.23 TCGA-AA-A022-01 17 17697441 17697441 G A RAI1 Missense_Mutation p.M393I 0.41 deleterious(0) benign(0.153) TCGA-AA-A022-01 17 18009788 18009788 C T DRG2 Silent p.Y332Y 0.39 TCGA-AA-A022-01 17 18167197 18167197 G A MIEF2 Missense_Mutation p.A173T 0.45 tolerated(0.51) benign(0.069) TCGA-AA-A022-01 17 18167942 18167942 G A MIEF2 Missense_Mutation p.G421D 0.41 tolerated(0.07) benign(0.006) TCGA-AA-A022-01 17 18188760 18188760 G A TOP3A Missense_Mutation p.R558W 0.33 tolerated(0.15) possibly_damaging(0.893) TCGA-AA-A022-01 17 20108479 20108479 C A SPECC1 Missense_Mutation p.L373I 0.32 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 17 2268520 2268520 C T SGSM2 Silent p.F391F 0.38 TCGA-AA-A022-01 17 2298378 2298378 G T MNT Silent p.P148P 0.10 TCGA-AA-A022-01 17 25909803 25909803 G T KSR1 Missense_Mutation p.A81S 0.41 tolerated(0.5) benign(0.009) TCGA-AA-A022-01 17 26088231 26088231 C T NOS2 Missense_Mutation p.V943I 0.28 deleterious(0.03) benign(0.27) TCGA-AA-A022-01 17 26960101 26960101 G - KIAA0100 Frame_Shift_Del p.H1222Mfs*42 0.27 TCGA-AA-A022-01 17 27086257 27086258 - G FAM222B Frame_Shift_Ins p.N241Efs*27 0.29 TCGA-AA-A022-01 17 27614071 27614071 T - NUFIP2 Frame_Shift_Del p.K314Sfs*39 0.14 TCGA-AA-A022-01 17 27899578 27899578 C T TP53I13 Missense_Mutation p.A311V 0.46 tolerated(0.23) probably_damaging(0.999) TCGA-AA-A022-01 17 2929643 2929643 G T RAP1GAP2 Splice_Site p.X622_splice 0.35 TCGA-AA-A022-01 17 30267338 30267338 G A SUZ12 Missense_Mutation p.R103Q 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 17 30529818 30529818 A - RHOT1 Frame_Shift_Del p.K412Nfs*12 0.30 TCGA-AA-A022-01 17 3119722 3119722 G A OR1A1 Missense_Mutation p.A270T 0.34 tolerated(1) probably_damaging(0.937) TCGA-AA-A022-01 17 3301292 3301292 G T OR1E1 Missense_Mutation p.P138H 0.31 tolerated(0.08) benign(0.114) TCGA-AA-A022-01 17 33459366 33459366 G A NLE1 3'UTR 0.39 TCGA-AA-A022-01 17 33904385 33904385 T C PEX12 Missense_Mutation p.M118V 0.31 deleterious(0.04) benign(0.001) TCGA-AA-A022-01 17 36734842 36734842 G A SRCIN1 Silent p.D75D 0.38 TCGA-AA-A022-01 17 36829706 36829706 G A C17orf96 Missense_Mutation p.P348L 0.47 deleterious(0) possibly_damaging(0.859) TCGA-AA-A022-01 17 36872935 36872935 C - MLLT6 Frame_Shift_Del p.P452Lfs*12 0.21 TCGA-AA-A022-01 17 37455310 37455310 G A FBXL20 Nonsense_Mutation p.R88* 0.33 TCGA-AA-A022-01 17 37819094 37819094 C T STARD3 Missense_Mutation p.A424V 0.29 deleterious(0.01) possibly_damaging(0.854) TCGA-AA-A022-01 17 38282467 38282467 G A MSL1 Missense_Mutation p.R4Q 0.28 deleterious(0) probably_damaging(0.993) TCGA-AA-A022-01 17 38318158 38318158 C T CASC3 Silent p.D150D 0.39 TCGA-AA-A022-01 17 38926571 38926571 G A KRT26 Silent p.T205T 0.32 TCGA-AA-A022-01 17 39274001 39274001 G A KRTAP4-11 Silent p.C189C 0.06 TCGA-AA-A022-01 17 39280214 39280214 A G KRTAP4-12 Missense_Mutation p.V54A 0.28 tolerated(0.12) unknown(0) TCGA-AA-A022-01 17 39296595 39296595 G - KRTAP4-6 Frame_Shift_Del p.Q49Sfs*162 0.16 TCGA-AA-A022-01 17 39553527 39553527 G A KRT31 Missense_Mutation p.R89W 0.36 deleterious(0.02) benign(0.02) TCGA-AA-A022-01 17 39673066 39673066 G A KRT15 Silent p.H244H 0.33 TCGA-AA-A022-01 17 39921291 39921291 T C JUP Missense_Mutation p.Q313R 0.39 tolerated(0.51) benign(0.029) TCGA-AA-A022-01 17 39973363 39973363 C A FKBP10 Missense_Mutation p.T100N 0.35 tolerated(0.29) probably_damaging(0.969) TCGA-AA-A022-01 17 39975559 39975559 C - FKBP10 Frame_Shift_Del p.G278Afs*20 0.24 TCGA-AA-A022-01 17 4060468 4060468 C T CYB5D2 3'UTR 0.40 TCGA-AA-A022-01 17 40734159 40734159 T C FAM134C Missense_Mutation p.Y358C 0.42 tolerated(0.14) benign(0.004) TCGA-AA-A022-01 17 41365218 41365218 A G TMEM106A Missense_Mutation p.D53G 0.29 tolerated(1) benign(0) TCGA-AA-A022-01 17 42392346 42392346 G A RUNDC3A Missense_Mutation p.D200N 0.28 deleterious(0.04) possibly_damaging(0.772) TCGA-AA-A022-01 17 42394005 42394005 G A RUNDC3A Silent p.T370T 0.29 TCGA-AA-A022-01 17 42397758 42397758 C T SLC25A39 Missense_Mutation p.R283H 0.08 deleterious(0) possibly_damaging(0.502) TCGA-AA-A022-01 17 42437276 42437276 G A FAM171A2 Missense_Mutation p.P115S 0.47 deleterious(0) probably_damaging(0.966) TCGA-AA-A022-01 17 43159062 43159062 A - NMT1 Frame_Shift_Del p.K63Rfs*17 0.22 TCGA-AA-A022-01 17 43907809 43907809 C T CRHR1 Silent p.A223A 0.29 TCGA-AA-A022-01 17 4435856 4435856 T C SPNS2 Missense_Mutation p.M271T 0.48 tolerated(0.07) benign(0.182) TCGA-AA-A022-01 17 4544992 4544992 A G ALOX15 Intron 0.25 TCGA-AA-A022-01 17 45736003 45736003 A G KPNB1 Missense_Mutation p.T205A 0.07 deleterious(0.02) benign(0.108) TCGA-AA-A022-01 17 46607839 46607839 G - HOXB1 Frame_Shift_Del p.P143Lfs*41 0.22 TCGA-AA-A022-01 17 4689332 4689332 C A VMO1 Missense_Mutation p.G71C 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 17 47486739 47486739 T G PHB Missense_Mutation p.E116A 0.19 deleterious(0.01) possibly_damaging(0.825) TCGA-AA-A022-01 17 48562123 48562123 G T RSAD1 Missense_Mutation p.W410C 0.40 tolerated(0.19) probably_damaging(0.986) TCGA-AA-A022-01 17 48598737 48598737 G A MYCBPAP Missense_Mutation p.D408N 0.32 tolerated(0.37) benign(0.133) TCGA-AA-A022-01 17 4860137 4860137 C T ENO3 Silent p.G396G 0.06 TCGA-AA-A022-01 17 48646309 48646309 C T CACNA1G Silent p.I107I 0.44 TCGA-AA-A022-01 17 4927078 4927078 A G KIF1C Missense_Mutation p.K982E 0.47 deleterious_low_confidence(0) benign(0.027) TCGA-AA-A022-01 17 56385076 56385076 C T BZRAP1 Missense_Mutation p.V1627I 0.35 tolerated(0.37) benign(0.005) TCGA-AA-A022-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.21 TCGA-AA-A022-01 17 57157199 57157199 G A TRIM37 Missense_Mutation p.R178C 0.23 deleterious(0) probably_damaging(0.982) TCGA-AA-A022-01 17 59477805 59477805 C T TBX2 Missense_Mutation p.R90C 0.52 deleterious(0) benign(0.299) TCGA-AA-A022-01 17 6023795 6023795 G T WSCD1 Missense_Mutation p.E514D 0.33 deleterious(0.03) probably_damaging(0.994) TCGA-AA-A022-01 17 61987296 61987296 A G CSHL1 Intron 0.30 TCGA-AA-A022-01 17 62038744 62038744 C T SCN4A Missense_Mutation p.A552T 0.29 deleterious(0.02) possibly_damaging(0.453) TCGA-AA-A022-01 17 62133186 62133186 G A ERN1 Silent p.D507D 0.46 TCGA-AA-A022-01 17 63221384 63221384 G A RGS9 Missense_Mutation p.E558K 0.42 tolerated_low_confidence(0.22) benign(0.079) TCGA-AA-A022-01 17 63633296 63633296 A G CEP112 Missense_Mutation p.L937P 0.31 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 17 64873403 64873403 G A CACNG5 5'UTR 0.07 TCGA-AA-A022-01 17 650298 650298 C - GEMIN4 Frame_Shift_Del p.E329Rfs*24 0.21 TCGA-AA-A022-01 17 6510506 6510506 T - KIAA0753 Frame_Shift_Del p.K638Nfs*18 0.23 TCGA-AA-A022-01 17 65141912 65141912 G A HELZ Nonsense_Mutation p.R906* 0.34 TCGA-AA-A022-01 17 65988192 65988192 A G C17orf58 Missense_Mutation p.I44T 0.38 deleterious_low_confidence(0.03) benign(0.306) TCGA-AA-A022-01 17 66246316 66246316 T - AMZ2 Intron 0.44 TCGA-AA-A022-01 17 66265257 66265257 C T SLC16A6 Missense_Mutation p.V518M 0.31 tolerated_low_confidence(0.47) benign(0.002) TCGA-AA-A022-01 17 66992093 66992093 A - ABCA9 Frame_Shift_Del p.F1166Lfs*5 0.24 TCGA-AA-A022-01 17 71253859 71253859 G A CPSF4L Missense_Mutation p.L90F 0.31 deleterious(0) benign(0.07) TCGA-AA-A022-01 17 7130762 7130762 G A DVL2 Missense_Mutation p.R442C 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 17 72436011 72436011 C T GPRC5C Silent p.S77S 0.55 TCGA-AA-A022-01 17 72519742 72519742 G A CD300LB Missense_Mutation p.A177V 0.38 tolerated(0.27) benign(0.003) TCGA-AA-A022-01 17 73089869 73089869 G T SLC16A5 Missense_Mutation p.Q46H 0.37 tolerated(0.35) benign(0.158) TCGA-AA-A022-01 17 7320470 7320470 G A NLGN2 Silent p.T620T 0.23 TCGA-AA-A022-01 17 7324326 7324326 G A SPEM1 Missense_Mutation p.R111H 0.32 tolerated(0.17) benign(0.001) TCGA-AA-A022-01 17 73486821 73486821 G A KIAA0195 Silent p.T370T 0.31 TCGA-AA-A022-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.23 TCGA-AA-A022-01 17 73748606 73748606 C T ITGB4 Silent p.D1352D 0.35 TCGA-AA-A022-01 17 73870588 73870588 G A TRIM47 Silent p.C631C 0.38 TCGA-AA-A022-01 17 73997996 73997996 C T CDK3 Missense_Mutation p.S53L 0.30 deleterious(0) probably_damaging(0.977) TCGA-AA-A022-01 17 74902245 74902245 C - MGAT5B Frame_Shift_Del p.T345Kfs*4 0.15 TCGA-AA-A022-01 17 75186930 75186930 G A SEC14L1 Missense_Mutation p.V37M 0.30 deleterious(0.01) possibly_damaging(0.795) TCGA-AA-A022-01 17 75484812 75484812 G A SEPT9 Nonsense_Mutation p.W376* 0.35 TCGA-AA-A022-01 17 76071242 76071242 C T TNRC6C Silent p.D978D 0.37 TCGA-AA-A022-01 17 76168029 76168029 C T SYNGR2 3'UTR 0.40 TCGA-AA-A022-01 17 76170848 76170848 C T TK1 Missense_Mutation p.A233T 0.31 tolerated_low_confidence(0.05) benign(0) TCGA-AA-A022-01 17 76227609 76227609 C T TMEM235 5'Flank 0.38 TCGA-AA-A022-01 17 76457702 76457702 C T DNAH17 Missense_Mutation p.G3074D 0.16 probably_damaging(0.935) TCGA-AA-A022-01 17 76475640 76475640 C T DNAH17 Silent p.T2595T 0.30 TCGA-AA-A022-01 17 76499039 76499039 C T DNAH17 Missense_Mutation p.E1667K 0.27 benign(0.034) TCGA-AA-A022-01 17 76528692 76528692 C G DNAH17 Missense_Mutation p.D996H 0.27 benign(0.339) TCGA-AA-A022-01 17 7689608 7689608 C T DNAH2 Missense_Mutation p.A2099V 0.42 benign(0.061) TCGA-AA-A022-01 17 76968408 76968408 A G LGALS3BP Silent p.H336H 0.21 TCGA-AA-A022-01 17 77808579 77808579 C - CBX4 Frame_Shift_Del p.E288Rfs*117 0.27 TCGA-AA-A022-01 17 78024051 78024051 C A CCDC40 Silent p.T376T 0.36 TCGA-AA-A022-01 17 79100323 79100323 G A AATK Missense_Mutation p.A220V 0.33 deleterious(0.02) benign(0.177) TCGA-AA-A022-01 17 79278447 79278447 C T LINC00482 RNA 0.42 TCGA-AA-A022-01 17 79414120 79414120 C T RP11-1055B8.7 Silent p.D1074D 0.35 TCGA-AA-A022-01 17 79428809 79428809 G A RP11-1055B8.7 Missense_Mutation p.E2374K 0.26 possibly_damaging(0.729) TCGA-AA-A022-01 17 7978913 7978913 C A ALOX12B Missense_Mutation p.G552C 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 17 7979987 7979987 C - ALOX12B Frame_Shift_Del p.L451Sfs*16 0.09 TCGA-AA-A022-01 17 80159738 80159738 C T CCDC57 Missense_Mutation p.R28H 0.39 tolerated(0.18) benign(0.019) TCGA-AA-A022-01 17 80273243 80273243 G A CD7 Missense_Mutation p.S226L 0.22 deleterious(0) probably_damaging(0.97) TCGA-AA-A022-01 17 80373367 80373367 C T OGFOD3 Missense_Mutation p.A71T 0.44 tolerated(1) benign(0.007) TCGA-AA-A022-01 17 80585164 80585164 A G WDR45B Missense_Mutation p.M83T 0.40 deleterious(0.02) benign(0.002) TCGA-AA-A022-01 17 80900502 80900502 G A TBCD 3'UTR 0.31 TCGA-AA-A022-01 17 8396259 8396259 G A MYH10 Silent p.D1431D 0.31 TCGA-AA-A022-01 17 8656722 8656722 G A SPDYE4 Nonsense_Mutation p.R191* 0.37 TCGA-AA-A022-01 17 9801318 9801318 C T RCVRN 3'UTR 0.29 TCGA-AA-A022-01 18 12311032 12311032 G A TUBB6 Missense_Mutation p.R86Q 0.50 tolerated_low_confidence(0.06) benign(0.251) TCGA-AA-A022-01 18 13068894 13068894 C T CEP192 Silent p.I1622I 0.28 TCGA-AA-A022-01 18 13885108 13885108 C T MC2R Missense_Mutation p.R137Q 0.28 tolerated(0.18) benign(0) TCGA-AA-A022-01 18 18564451 18564451 G A ROCK1 Silent p.L784L 0.28 TCGA-AA-A022-01 18 20774432 20774432 C G CABLES1 Nonsense_Mutation p.S313* 0.55 TCGA-AA-A022-01 18 21494774 21494774 G A LAMA3 Missense_Mutation p.D2532N 0.24 possibly_damaging(0.819) TCGA-AA-A022-01 18 21495340 21495340 A - LAMA3 Frame_Shift_Del p.T2580Hfs*68 0.33 TCGA-AA-A022-01 18 28609535 28609535 T C DSC3 Silent p.A138A 0.53 TCGA-AA-A022-01 18 29211084 29211084 G A B4GALT6 Missense_Mutation p.A205V 0.55 deleterious(0) probably_damaging(0.957) TCGA-AA-A022-01 18 30091776 30091776 T - WBP11P1 RNA 0.29 TCGA-AA-A022-01 18 30321955 30321955 G A KLHL14 Silent p.D335D 0.26 TCGA-AA-A022-01 18 30803106 30803107 - T CCDC178 Frame_Shift_Ins p.K634Efs*5 0.34 TCGA-AA-A022-01 18 32889116 32889116 T A ZNF271 RNA 0.21 TCGA-AA-A022-01 18 33694162 33694162 G A SLC39A6 Missense_Mutation p.R581C 0.27 tolerated(0.21) probably_damaging(0.996) TCGA-AA-A022-01 18 33718276 33718276 A G ELP2 Missense_Mutation p.Y111C 0.25 tolerated(0.24) benign(0.004) TCGA-AA-A022-01 18 39537593 39537593 A C PIK3C3 Missense_Mutation p.M43L 0.22 tolerated(0.7) benign(0.002) TCGA-AA-A022-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.32 TCGA-AA-A022-01 18 42281767 42281767 G T SETBP1 Missense_Mutation p.K152N 0.55 deleterious(0.02) probably_damaging(0.996) TCGA-AA-A022-01 18 44057674 44057674 G A LOXHD1 Missense_Mutation p.R1084C 0.53 deleterious(0.03) benign(0.067) TCGA-AA-A022-01 18 44236897 44236897 C - LOXHD1 Frame_Shift_Del p.E34Sfs*64 0.20 TCGA-AA-A022-01 18 44559302 44559302 G A TCEB3B 3'UTR 0.28 TCGA-AA-A022-01 18 54270273 54270273 T - TXNL1 Frame_Shift_Del p.G286Efs*23 0.22 TCGA-AA-A022-01 18 55315637 55315638 CA - ATP8B1 3'UTR 0.28 TCGA-AA-A022-01 18 5956181 5956181 C T L3MBTL4 3'UTR 0.51 TCGA-AA-A022-01 18 66564655 66564655 A - CCDC102B Frame_Shift_Del p.N420Tfs*5 0.16 TCGA-AA-A022-01 18 6971913 6971913 G T LAMA1 Missense_Mutation p.S2281Y 0.27 deleterious(0) probably_damaging(0.964) TCGA-AA-A022-01 18 7032076 7032076 C T LAMA1 Missense_Mutation p.G755S 0.20 deleterious(0.01) probably_damaging(1) TCGA-AA-A022-01 18 71791794 71791794 G T FBXO15 Missense_Mutation p.L309M 0.22 tolerated(0.1) possibly_damaging(0.539) TCGA-AA-A022-01 18 73001111 73001111 A - TSHZ1 3'UTR 0.33 TCGA-AA-A022-01 18 74590095 74590095 C T ZNF236 Missense_Mutation p.A322V 0.44 tolerated(0.38) benign(0.15) TCGA-AA-A022-01 18 76755013 76755013 G A SALL3 Missense_Mutation p.A1008T 0.54 tolerated(1) benign(0.012) TCGA-AA-A022-01 18 8113555 8113555 A G PTPRM Missense_Mutation p.Y643C 0.28 deleterious(0) probably_damaging(0.951) TCGA-AA-A022-01 18 9550351 9550351 A G PPP4R1 Silent p.Y779Y 0.19 TCGA-AA-A022-01 19 10157501 10157501 C T C3P1 RNA 0.40 TCGA-AA-A022-01 19 10404529 10404529 C T ICAM5 Missense_Mutation p.R541C 0.37 deleterious(0.04) possibly_damaging(0.79) TCGA-AA-A022-01 19 10404738 10404738 G A ICAM5 Silent p.P578P 0.44 TCGA-AA-A022-01 19 10472834 10472834 G A TYK2 Missense_Mutation p.R565W 0.26 tolerated(0.06) benign(0.189) TCGA-AA-A022-01 19 10625022 10625022 G A S1PR5 Silent p.N222N 0.40 TCGA-AA-A022-01 19 1074149 1074149 G - HMHA1 Frame_Shift_Del p.G297Afs*16 0.22 TCGA-AA-A022-01 19 10792843 10792843 C T ILF3 Missense_Mutation p.T452M 0.31 deleterious(0) probably_damaging(0.995) TCGA-AA-A022-01 19 11100020 11100020 T C SMARCA4 Silent p.I382I 0.41 TCGA-AA-A022-01 19 11136181 11136181 C T SMARCA4 Silent p.I1055I 0.34 TCGA-AA-A022-01 19 11558529 11558529 C - PRKCSH Frame_Shift_Del p.P345Rfs*40 0.20 TCGA-AA-A022-01 19 11591485 11591485 G - ELAVL3 5'UTR 0.23 TCGA-AA-A022-01 19 11591496 11591496 G A ELAVL3 5'UTR 0.41 TCGA-AA-A022-01 19 11943463 11943463 G A ZNF440 Missense_Mutation p.R491H 0.21 deleterious(0.03) benign(0) TCGA-AA-A022-01 19 11943911 11943911 T C ZNF440 3'UTR 0.25 TCGA-AA-A022-01 19 1244345 1244345 C T ATP5D Missense_Mutation p.A139V 0.39 deleterious(0.01) benign(0.102) TCGA-AA-A022-01 19 12878702 12878702 G A HOOK2 Missense_Mutation p.R411W 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 19 13210137 13210137 C T LYL1 Missense_Mutation p.R280Q 0.39 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-AA-A022-01 19 13211960 13211960 T A LYL1 Missense_Mutation p.E9V 0.25 deleterious_low_confidence(0) possibly_damaging(0.524) TCGA-AA-A022-01 19 13394088 13394088 C T CACNA1A Missense_Mutation p.R1272Q 0.41 benign(0.056) TCGA-AA-A022-01 19 13993680 13993680 G - C19orf57 Frame_Shift_Del p.L617Cfs*25 0.28 TCGA-AA-A022-01 19 14581408 14581410 GAG - PKN1 In_Frame_Del p.E828del 0.33 TCGA-AA-A022-01 19 1467009 1467009 G A APC2 Missense_Mutation p.V1237M 0.38 probably_damaging(0.982) TCGA-AA-A022-01 19 14805848 14805848 C T ZNF333 Silent p.A10A 0.32 TCGA-AA-A022-01 19 1508093 1508093 C A ADAMTSL5 Missense_Mutation p.G169W 0.36 deleterious(0) probably_damaging(0.97) TCGA-AA-A022-01 19 15082641 15082641 C T SLC1A6 Missense_Mutation p.R84H 0.28 deleterious(0.02) possibly_damaging(0.545) TCGA-AA-A022-01 19 16240378 16240378 C T RAB8A Silent p.L165L 0.28 TCGA-AA-A022-01 19 1632385 1632385 G A TCF3 Silent p.S55S 0.27 TCGA-AA-A022-01 19 16631023 16631023 G T CHERP Missense_Mutation p.S800Y 0.47 deleterious(0.02) unknown(0) TCGA-AA-A022-01 19 16687966 16687966 G A MED26 Silent p.A225A 0.35 TCGA-AA-A022-01 19 17004089 17004089 C T CPAMD8 Missense_Mutation p.A1877T 0.42 tolerated_low_confidence(0.26) benign(0.001) TCGA-AA-A022-01 19 17438056 17438056 G A ANO8 Silent p.R883R 0.33 TCGA-AA-A022-01 19 17438122 17438122 G A ANO8 Silent p.H861H 0.42 TCGA-AA-A022-01 19 17439433 17439433 C G ANO8 Missense_Mutation p.E588D 0.16 tolerated_low_confidence(0.25) unknown(0) TCGA-AA-A022-01 19 17940991 17940991 G T JAK3 Missense_Mutation p.P1045T 0.35 tolerated(1) benign(0.182) TCGA-AA-A022-01 19 17945701 17945701 C T JAK3 Missense_Mutation p.S720N 0.27 tolerated(0.33) benign(0.077) TCGA-AA-A022-01 19 18245498 18245498 G A MAST3 Missense_Mutation p.A532T 0.27 tolerated(0.93) benign(0.001) TCGA-AA-A022-01 19 18255452 18255452 C T MAST3 Missense_Mutation p.R892C 0.25 deleterious(0) benign(0.015) TCGA-AA-A022-01 19 18378026 18378026 C T KIAA1683 Silent p.T108T 0.34 TCGA-AA-A022-01 19 18557267 18557267 G A ELL Missense_Mutation p.S519L 0.26 tolerated(0.64) benign(0.011) TCGA-AA-A022-01 19 19313895 19313895 C T NR2C2AP 5'UTR 0.37 TCGA-AA-A022-01 19 19371815 19371815 G A HAPLN4 Silent p.D97D 0.35 TCGA-AA-A022-01 19 19372295 19372295 C T HAPLN4 Silent p.A27A 0.27 TCGA-AA-A022-01 19 19735209 19735209 G A LPAR2 Silent p.R304R 0.29 TCGA-AA-A022-01 19 19764900 19764900 G A ATP13A1 Missense_Mutation p.R623C 0.23 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 19 19767480 19767480 G A ATP13A1 Missense_Mutation p.P358S 0.45 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 19 21720353 21720353 A - ZNF429 Frame_Shift_Del p.I502Ffs*? 0.14 TCGA-AA-A022-01 19 21720811 21720811 T C ZNF429 Silent p.C652C 0.47 TCGA-AA-A022-01 19 22847323 22847323 A G ZNF492 Silent p.E284E 0.36 TCGA-AA-A022-01 19 23414131 23414131 A G ZNF724P Missense_Mutation p.C55R 0.35 deleterious(0.03) possibly_damaging(0.831) TCGA-AA-A022-01 19 2344557 2344557 A G SPPL2B RNA 0.35 TCGA-AA-A022-01 19 287736 287736 C T PPAP2C Missense_Mutation p.A95T 0.28 tolerated(0.26) possibly_damaging(0.857) TCGA-AA-A022-01 19 2991865 2991865 A C TLE6 Silent p.G423G 0.33 TCGA-AA-A022-01 19 30020766 30020766 G A VSTM2B Missense_Mutation p.R113Q 0.33 tolerated(0.56) possibly_damaging(0.771) TCGA-AA-A022-01 19 30936287 30936287 T - ZNF536 Frame_Shift_Del p.L608Cfs*5 0.26 TCGA-AA-A022-01 19 33089118 33089118 A G ANKRD27 Missense_Mutation p.V1029A 0.42 tolerated_low_confidence(0.26) benign(0.153) TCGA-AA-A022-01 19 33439186 33439186 C T CEP89 Missense_Mutation p.R194Q 0.36 tolerated(0.58) benign(0.068) TCGA-AA-A022-01 19 33878217 33878217 G A PEPD 3'UTR 0.35 TCGA-AA-A022-01 19 3452663 3452663 C T NFIC Missense_Mutation p.P423L 0.48 tolerated(0.09) possibly_damaging(0.776) TCGA-AA-A022-01 19 34718414 34718414 T - LSM14A 3'UTR 0.18 TCGA-AA-A022-01 19 34884165 34884165 C T GPI Missense_Mutation p.R284C 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-AA-A022-01 19 3496805 3496805 G A DOHH Missense_Mutation p.T3M 0.33 deleterious(0.03) possibly_damaging(0.772) TCGA-AA-A022-01 19 35250871 35250871 C T ZNF599 Missense_Mutation p.G279R 0.33 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 19 35250882 35250882 C T ZNF599 Missense_Mutation p.R275H 0.32 deleterious(0) benign(0.07) TCGA-AA-A022-01 19 35835825 35835825 G A CD22 Missense_Mutation p.R710Q 0.45 tolerated(0.52) benign(0.006) TCGA-AA-A022-01 19 36018890 36018890 G T SBSN Silent p.A98A 0.34 TCGA-AA-A022-01 19 362114 362114 G A THEG 3'UTR 0.32 TCGA-AA-A022-01 19 36278096 36278096 C - ARHGAP33 Frame_Shift_Del p.P717Lfs*79 0.18 TCGA-AA-A022-01 19 36278635 36278635 C - ARHGAP33 Frame_Shift_Del p.P897Hfs*115 0.29 TCGA-AA-A022-01 19 36590380 36590380 G A WDR62 Missense_Mutation p.R867Q 0.34 tolerated(0.15) probably_damaging(0.987) TCGA-AA-A022-01 19 3733756 3733756 C T TJP3 Silent p.N250N 0.34 TCGA-AA-A022-01 19 37369436 37369437 - A ZNF345 3'UTR 0.34 TCGA-AA-A022-01 19 3784219 3784219 C T MATK Missense_Mutation p.V90I 0.34 deleterious(0.02) benign(0.228) TCGA-AA-A022-01 19 38028414 38028415 - T ZNF793 Frame_Shift_Ins p.C288Lfs*28 0.37 TCGA-AA-A022-01 19 3831746 3831746 C T ZFR2 Silent p.T170T 0.30 TCGA-AA-A022-01 19 38378736 38378736 T C WDR87 Missense_Mutation p.I1820V 0.34 benign(0.003) TCGA-AA-A022-01 19 38956881 38956881 C T RYR1 Silent p.S1007S 0.59 TCGA-AA-A022-01 19 39086331 39086331 G A MAP4K1 Missense_Mutation p.R740W 0.41 deleterious(0.01) possibly_damaging(0.803) TCGA-AA-A022-01 19 3909578 3909578 G T ATCAY Missense_Mutation p.G248C 0.49 deleterious(0) possibly_damaging(0.899) TCGA-AA-A022-01 19 39331172 39331172 C T HNRNPL Missense_Mutation p.R303H 0.41 deleterious(0.02) possibly_damaging(0.469) TCGA-AA-A022-01 19 39976423 39976423 C T TIMM50 Silent p.G259G 0.40 TCGA-AA-A022-01 19 39998494 39998494 T C DLL3 Silent p.P566P 0.32 TCGA-AA-A022-01 19 40320999 40320999 G - DYRK1B Intron 0.27 TCGA-AA-A022-01 19 4054011 4054011 T A ZBTB7A Missense_Mutation p.E407V 0.33 deleterious(0) possibly_damaging(0.726) TCGA-AA-A022-01 19 4054012 4054012 C A ZBTB7A Nonsense_Mutation p.E407* 0.32 TCGA-AA-A022-01 19 40722134 40722134 T A TTC9B Missense_Mutation p.N219I 0.32 deleterious(0) benign(0.118) TCGA-AA-A022-01 19 41096990 41096990 C G SHKBP1 Missense_Mutation p.C667W 0.32 deleterious_low_confidence(0) benign(0.425) TCGA-AA-A022-01 19 41209515 41209515 C A ADCK4 Missense_Mutation p.A244S 0.40 deleterious(0.02) probably_damaging(1) TCGA-AA-A022-01 19 41384772 41384772 G A CYP2A7 Nonsense_Mutation p.Q242* 0.60 TCGA-AA-A022-01 19 4157142 4157142 C T CREB3L3 Missense_Mutation p.R103C 0.49 tolerated(0.12) benign(0.425) TCGA-AA-A022-01 19 41860774 41860774 C T B9D2 Missense_Mutation p.R120Q 0.28 tolerated(0.35) benign(0.003) TCGA-AA-A022-01 19 425142 425142 C T SHC2 Missense_Mutation p.A422T 0.32 tolerated(0.19) benign(0.016) TCGA-AA-A022-01 19 42585595 42585595 G - ZNF574 3'UTR 0.27 TCGA-AA-A022-01 19 42792117 42792117 T C CIC Silent p.A307A 0.31 TCGA-AA-A022-01 19 42793140 42793140 T C CIC Silent p.V344V 0.27 TCGA-AA-A022-01 19 42797376 42797376 C - CIC Frame_Shift_Del p.P1248Hfs*54 0.23 TCGA-AA-A022-01 19 42847725 42847725 G A MEGF8 Missense_Mutation p.R537H 0.31 tolerated(0.13) benign(0.229) TCGA-AA-A022-01 19 42875612 42875612 G A MEGF8 Missense_Mutation p.R2349H 0.31 deleterious(0.02) benign(0.254) TCGA-AA-A022-01 19 43093012 43093012 G A CEACAM8 Silent p.S294S 0.30 TCGA-AA-A022-01 19 43259170 43259170 G A PSG8 Missense_Mutation p.R320C 0.35 tolerated(0.16) possibly_damaging(0.788) TCGA-AA-A022-01 19 44111920 44111920 G A ZNF428 Missense_Mutation p.P139L 0.36 deleterious_low_confidence(0.01) benign(0.125) TCGA-AA-A022-01 19 44131041 44131041 G A CADM4 Missense_Mutation p.R132W 0.56 deleterious(0) probably_damaging(0.912) TCGA-AA-A022-01 19 44150698 44150698 G A PLAUR 3'Flank 0.44 TCGA-AA-A022-01 19 44174256 44174256 A G PLAUR Missense_Mutation p.L6P 0.20 deleterious(0) probably_damaging(0.979) TCGA-AA-A022-01 19 44590674 44590674 G A ZNF284 Missense_Mutation p.C348Y 0.26 deleterious(0) benign(0.425) TCGA-AA-A022-01 19 45211327 45211327 C T CEACAM16 Missense_Mutation p.R379W 0.38 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 19 4529279 4529279 C - PLIN5 Intron 0.29 TCGA-AA-A022-01 19 45655593 45655593 A G NKPD1 Missense_Mutation p.L701P 0.36 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 19 45659119 45659119 G A NKPD1 Silent p.H195H 0.35 TCGA-AA-A022-01 19 46268710 46268710 C A SIX5 3'UTR 0.29 TCGA-AA-A022-01 19 46319295 46319295 G - SYMPK Frame_Shift_Del p.S1168Pfs*46 0.24 TCGA-AA-A022-01 19 46417578 46417578 C T NANOS2 Missense_Mutation p.R125H 0.31 tolerated(0.13) probably_damaging(0.997) TCGA-AA-A022-01 19 46815431 46815431 G A HIF3A Missense_Mutation p.A262T 0.36 tolerated(0.37) probably_damaging(0.997) TCGA-AA-A022-01 19 48024387 48024387 G - ZNF541 3'UTR 0.24 TCGA-AA-A022-01 19 48638958 48638958 A G LIG1 Missense_Mutation p.M501T 0.30 tolerated(0.09) benign(0.023) TCGA-AA-A022-01 19 48908269 48908269 C T GRIN2D Silent p.C248C 0.43 TCGA-AA-A022-01 19 49107038 49107038 G - FAM83E Frame_Shift_Del p.Q297Rfs*6 0.35 TCGA-AA-A022-01 19 49183456 49183456 T G RN7SL345P 5'Flank 0.56 TCGA-AA-A022-01 19 49246726 49246726 A G IZUMO1 Missense_Mutation p.C159R 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 19 49552133 49552133 G - CGB8 5'UTR 0.17 TCGA-AA-A022-01 19 49843591 49843591 G A CD37 3'UTR 0.38 TCGA-AA-A022-01 19 50060371 50060371 T G NOSIP Missense_Mutation p.K132Q 0.51 tolerated(0.24) benign(0.049) TCGA-AA-A022-01 19 50098808 50098808 C - PRR12 Frame_Shift_Del p.P408Hfs*62 0.40 TCGA-AA-A022-01 19 50363638 50363639 - G PTOV1 3'UTR 0.21 TCGA-AA-A022-01 19 50386921 50386921 C T TBC1D17 Missense_Mutation p.R349C 0.33 deleterious(0.04) probably_damaging(0.982) TCGA-AA-A022-01 19 504871 504871 A G MADCAM1 Missense_Mutation p.D352G 0.35 tolerated_low_confidence(0.83) benign(0) TCGA-AA-A022-01 19 50881012 50881012 C T NR1H2 Silent p.G22G 0.44 TCGA-AA-A022-01 19 51016027 51016027 C T ASPDH Missense_Mutation p.R108Q 0.34 tolerated(1) benign(0.003) TCGA-AA-A022-01 19 51170511 51170511 G A SHANK1 Missense_Mutation p.P1569L 0.14 unknown(0) TCGA-AA-A022-01 19 52273225 52273225 C A FPR2 3'UTR 0.33 TCGA-AA-A022-01 19 5239002 5239002 G A PTPRS Missense_Mutation p.R593C 0.19 deleterious(0.02) possibly_damaging(0.77) TCGA-AA-A022-01 19 52568296 52568296 T A ZNF841 3'UTR 0.39 TCGA-AA-A022-01 19 52888041 52888041 C T ZNF880 Missense_Mutation p.T403M 0.50 deleterious(0) possibly_damaging(0.632) TCGA-AA-A022-01 19 53393494 53393494 C T ZNF320 Silent p.Q5Q 0.40 TCGA-AA-A022-01 19 53761683 53761683 G A VN1R2 Missense_Mutation p.A19T 0.28 benign(0.194) TCGA-AA-A022-01 19 54260014 54260014 C T MIR516A1 RNA 0.32 TCGA-AA-A022-01 19 54656002 54656002 C T CNOT3 Missense_Mutation p.R549W 0.36 deleterious(0) possibly_damaging(0.689) TCGA-AA-A022-01 19 54744915 54744915 G A LILRA6 Silent p.V249V 0.14 TCGA-AA-A022-01 19 54932497 54932497 G - TTYH1 Frame_Shift_Del p.V119Cfs*33 0.22 TCGA-AA-A022-01 19 54973077 54973077 C T LENG8 3'UTR 0.07 TCGA-AA-A022-01 19 55047027 55047027 G T KIR3DX1 Missense_Mutation p.G191V 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 19 55445856 55445856 C T NLRP7 Splice_Site p.X824_splice 0.40 TCGA-AA-A022-01 19 55598941 55598943 AAG - EPS8L1 In_Frame_Del p.K713del 0.30 TCGA-AA-A022-01 19 55653283 55653283 G A TNNT1 Missense_Mutation p.P45L 0.14 tolerated(0.39) unknown(0) TCGA-AA-A022-01 19 55715404 55715404 A G PTPRH Missense_Mutation p.V211A 0.32 unknown(0) TCGA-AA-A022-01 19 5604818 5604818 G A SAFB2 Nonsense_Mutation p.R476* 0.07 TCGA-AA-A022-01 19 56274033 56274033 G A RFPL4A Missense_Mutation p.R119Q 0.20 tolerated(0.24) benign(0.025) TCGA-AA-A022-01 19 57089371 57089371 C T ZNF470 Missense_Mutation p.A525V 0.35 tolerated(0.23) benign(0.001) TCGA-AA-A022-01 19 57326142 57326142 G A PEG3 Missense_Mutation p.S1223L 0.37 tolerated(0.34) benign(0.001) TCGA-AA-A022-01 19 57327346 57327346 C A PEG3 Missense_Mutation p.G822W 0.38 deleterious(0.01) probably_damaging(0.941) TCGA-AA-A022-01 19 57764507 57764508 - T ZNF805 Frame_Shift_Ins p.W109Lfs*51 0.19 TCGA-AA-A022-01 19 57765267 57765267 G A ZNF805 Nonsense_Mutation p.W360* 0.31 TCGA-AA-A022-01 19 58018562 58018562 T - ZNF773 Frame_Shift_Del p.F368Lfs*100 0.19 TCGA-AA-A022-01 19 58083614 58083614 C T ZNF416 Missense_Mutation p.G553D 0.38 tolerated(0.21) benign(0.055) TCGA-AA-A022-01 19 58361631 58361631 A G CTD-2583A14.10 Intron 0.36 TCGA-AA-A022-01 19 58458856 58458856 C T ZNF256 5'UTR 0.12 TCGA-AA-A022-01 19 621138 621138 G A POLRMT Missense_Mutation p.R854W 0.32 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 19 694923 694923 G - PRSS57 Frame_Shift_Del p.H43Tfs*51 0.25 TCGA-AA-A022-01 19 7516152 7516152 G T ARHGEF18 Missense_Mutation p.A431S 0.37 deleterious(0.03) probably_damaging(0.917) TCGA-AA-A022-01 19 8002975 8002975 T - TIMM44 Frame_Shift_Del p.K83Nfs*9 0.09 TCGA-AA-A022-01 19 8601852 8601852 G A MYO1F Nonsense_Mutation p.R594* 0.38 TCGA-AA-A022-01 19 9084723 9084723 G T MUC16 Silent p.P2364P 0.04 TCGA-AA-A022-01 19 9085800 9085800 G T MUC16 Silent p.V2005V 0.36 TCGA-AA-A022-01 19 932584 932584 C T ARID3A Missense_Mutation p.P179S 0.35 tolerated(0.1) benign(0.319) TCGA-AA-A022-01 19 9730254 9730254 C T ZNF561 5'UTR 0.14 TCGA-AA-A022-01 19 990869 990869 G - WDR18 Frame_Shift_Del p.E207Sfs*15 0.21 TCGA-AA-A022-01 19 9965018 9965018 G A OLFM2 Silent p.Y403Y 0.37 TCGA-AA-A022-01 1 100464874 100464874 T C SLC35A3 Missense_Mutation p.M82T 0.34 tolerated(0.31) benign(0.001) TCGA-AA-A022-01 1 100736202 100736202 C T RTCA Missense_Mutation p.A140V 0.37 tolerated(0.11) benign(0.086) TCGA-AA-A022-01 1 101339425 101339425 A - EXTL2 3'UTR 0.29 TCGA-AA-A022-01 1 101705929 101705929 C - S1PR1 3'UTR 0.21 TCGA-AA-A022-01 1 10192507 10192507 C T UBE4B Silent p.V664V 0.19 TCGA-AA-A022-01 1 1021356 1021356 G A C1orf159 Missense_Mutation p.T116M 0.38 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 1 103484385 103484385 C T COL11A1 Missense_Mutation p.A447T 0.32 probably_damaging(0.93) TCGA-AA-A022-01 1 104094349 104094349 G A RNPC3 Missense_Mutation p.A501T 0.29 deleterious(0.02) possibly_damaging(0.475) TCGA-AA-A022-01 1 10511575 10511575 C - CORT Frame_Shift_Del p.Q83Sfs*43 0.28 TCGA-AA-A022-01 1 109103058 109103058 A T FAM102B Missense_Mutation p.K3M 0.37 deleterious(0) probably_damaging(0.934) TCGA-AA-A022-01 1 109461391 109461391 C T GPSM2 Nonsense_Mutation p.R474* 0.34 TCGA-AA-A022-01 1 109801515 109801515 T G CELSR2 Missense_Mutation p.S1258A 0.23 deleterious(0) benign(0.005) TCGA-AA-A022-01 1 110170826 110170826 C T AMPD2 Missense_Mutation p.T455M 0.28 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 1 110603358 110603358 C T ALX3 Silent p.T343T 0.36 TCGA-AA-A022-01 1 110883998 110883998 T C RBM15 Silent p.P657P 0.38 TCGA-AA-A022-01 1 11249916 11249916 C T ANGPTL7 Missense_Mutation p.R94W 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 1 115118321 115118321 C T BCAS2 Nonsense_Mutation p.W103* 0.35 TCGA-AA-A022-01 1 115267926 115267926 C T CSDE1 Missense_Mutation p.E603K 0.24 tolerated(0.08) benign(0.023) TCGA-AA-A022-01 1 116233774 116233774 C - VANGL1 Frame_Shift_Del p.L451Cfs*21 0.23 TCGA-AA-A022-01 1 116675997 116675997 G A MAB21L3 3'UTR 0.38 TCGA-AA-A022-01 1 116946569 116946569 A - ATP1A1 Frame_Shift_Del p.K1006Nfs*54 0.25 TCGA-AA-A022-01 1 11710106 11710106 C T FBXO2 Silent p.V139V 0.34 TCGA-AA-A022-01 1 11728991 11728991 G - FBXO6 Frame_Shift_Del p.C93Vfs*57 0.29 TCGA-AA-A022-01 1 11775212 11775212 C T DRAXIN Missense_Mutation p.P295L 0.32 tolerated(0.16) possibly_damaging(0.645) TCGA-AA-A022-01 1 118167739 118167739 T C FAM46C 3'UTR 0.38 TCGA-AA-A022-01 1 11838743 11838743 G A C1orf167 Missense_Mutation p.R813Q 0.47 tolerated(0.36) unknown(0) TCGA-AA-A022-01 1 11848743 11848743 C T C1orf167 Silent p.D1395D 0.05 TCGA-AA-A022-01 1 120284473 120284473 G A PHGDH Missense_Mutation p.V388M 0.29 tolerated(0.11) benign(0.094) TCGA-AA-A022-01 1 120462179 120462179 T C NOTCH2 Missense_Mutation p.D1846G 0.34 tolerated(0.16) benign(0.126) TCGA-AA-A022-01 1 12336223 12336223 C T VPS13D Missense_Mutation p.R860C 0.27 probably_damaging(0.994) TCGA-AA-A022-01 1 1269674 1269674 G A TAS1R3 Missense_Mutation p.A797T 0.35 tolerated(0.58) benign(0.144) TCGA-AA-A022-01 1 14149815 14149815 C T PRDM2 3'UTR 0.30 TCGA-AA-A022-01 1 145273202 145273203 - G NOTCH2NL Frame_Shift_Ins p.E21Gfs*10 0.08 TCGA-AA-A022-01 1 145415825 145415825 C T HFE2 Missense_Mutation p.T215I 0.25 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 1 145562138 145562138 C T ANKRD35 Missense_Mutation p.A609V 0.34 tolerated(0.1) benign(0) TCGA-AA-A022-01 1 147415652 147415652 C T GPR89B Nonsense_Mutation p.R103* 0.30 TCGA-AA-A022-01 1 149784856 149784856 C A HIST2H3D Missense_Mutation p.L127F 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AA-A022-01 1 149895562 149895562 G - SF3B4 Frame_Shift_Del p.H383Mfs*75 0.27 TCGA-AA-A022-01 1 150131702 150131702 G A PLEKHO1 Missense_Mutation p.R405Q 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A022-01 1 150551933 150551933 C T MCL1 Missense_Mutation p.S25N 0.36 tolerated_low_confidence(0.12) benign(0.011) TCGA-AA-A022-01 1 150784399 150784399 A G ARNT 3'UTR 0.20 TCGA-AA-A022-01 1 151678725 151678725 C T CELF3 Silent p.Q367Q 0.37 TCGA-AA-A022-01 1 151773784 151773784 T C LINGO4 Missense_Mutation p.D466G 0.28 tolerated(0.27) benign(0.136) TCGA-AA-A022-01 1 152277455 152277455 C T FLG Missense_Mutation p.G3303R 0.52 unknown(0) TCGA-AA-A022-01 1 152282494 152282494 C T FLG Missense_Mutation p.R1623Q 0.27 benign(0.238) TCGA-AA-A022-01 1 152283373 152283373 C T FLG Missense_Mutation p.G1330D 0.29 probably_damaging(0.931) TCGA-AA-A022-01 1 153904742 153904742 G A DENND4B Missense_Mutation p.R1312C 0.37 deleterious(0) benign(0.165) TCGA-AA-A022-01 1 153949452 153949452 C T JTB Missense_Mutation p.A41T 0.35 tolerated(0.63) benign(0.005) TCGA-AA-A022-01 1 155152336 155152336 G A TRIM46 Missense_Mutation p.R505H 0.32 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 1 155169837 155169837 G A THBS3 Silent p.D592D 0.39 TCGA-AA-A022-01 1 155294982 155294982 G - RUSC1 Intron 0.26 TCGA-AA-A022-01 1 156235987 156235987 C T SMG5 Silent p.S480S 0.34 TCGA-AA-A022-01 1 156446855 156446855 G A MEF2D Silent p.P268P 0.43 TCGA-AA-A022-01 1 156696860 156696860 A T ISG20L2 Silent p.V195V 0.39 TCGA-AA-A022-01 1 156814053 156814053 C - INSRR Frame_Shift_Del p.L920Cfs*37 0.22 TCGA-AA-A022-01 1 156819230 156819230 C T INSRR Missense_Mutation p.D418N 0.45 tolerated(0.05) probably_damaging(0.999) TCGA-AA-A022-01 1 15701062 15701062 G A FHAD1 Missense_Mutation p.R384H 0.28 deleterious(0.04) benign(0.036) TCGA-AA-A022-01 1 15702189 15702189 C A FHAD1 Missense_Mutation p.P436Q 0.41 deleterious(0) probably_damaging(0.935) TCGA-AA-A022-01 1 1572451 1572451 T C CDK11B Missense_Mutation p.I565V 0.06 unknown(0) TCGA-AA-A022-01 1 157504567 157504567 C G FCRL5 Missense_Mutation p.Q506H 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-AA-A022-01 1 158669890 158669890 G A OR6K2 Missense_Mutation p.R185C 0.39 deleterious(0.03) benign(0.081) TCGA-AA-A022-01 1 158687400 158687400 C T OR6K3 Missense_Mutation p.C169Y 0.39 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 1 15956855 15956855 C T DDI2 Missense_Mutation p.P102S 0.29 tolerated(0.07) possibly_damaging(0.899) TCGA-AA-A022-01 1 159898452 159898452 G - IGSF9 Frame_Shift_Del p.P909Lfs*19 0.29 TCGA-AA-A022-01 1 159901322 159901322 C T IGSF9 Silent p.K478K 0.32 TCGA-AA-A022-01 1 160324013 160324013 C T NCSTN Nonsense_Mutation p.R429* 0.37 TCGA-AA-A022-01 1 160970914 160970914 A G F11R Missense_Mutation p.V46A 0.30 tolerated(1) benign(0.123) TCGA-AA-A022-01 1 161695731 161695731 C T FCRLB Missense_Mutation p.A143V 0.33 tolerated(0.19) benign(0.14) TCGA-AA-A022-01 1 161953999 161953999 G A OLFML2B Silent p.G573G 0.45 TCGA-AA-A022-01 1 162325081 162325081 A G NOS1AP Missense_Mutation p.S234G 0.30 tolerated(0.09) benign(0.008) TCGA-AA-A022-01 1 1635670 1635670 T C CDK11A Missense_Mutation p.I560V 0.16 tolerated(0.12) unknown(0) TCGA-AA-A022-01 1 16464669 16464669 C T EPHA2 Missense_Mutation p.A331T 0.35 deleterious(0.01) possibly_damaging(0.899) TCGA-AA-A022-01 1 165398130 165398130 G A RXRG Silent p.S41S 0.36 TCGA-AA-A022-01 1 166819082 166819082 C - POGK Frame_Shift_Del p.P424Rfs*18 0.28 TCGA-AA-A022-01 1 168054869 168054869 C - GPR161 Frame_Shift_Del p.G517Afs*13 0.41 TCGA-AA-A022-01 1 169293675 169293675 G A NME7 Missense_Mutation p.R23C 0.42 deleterious(0.02) benign(0.12) TCGA-AA-A022-01 1 169487691 169487691 G A F5 Missense_Mutation p.R2102C 0.28 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 1 169512354 169512354 T C F5 Splice_Site p.X659_splice 0.34 TCGA-AA-A022-01 1 16952465 16952465 C A CROCCP2 3'Flank 0.10 TCGA-AA-A022-01 1 169890855 169890855 G A KIFAP3 Missense_Mutation p.R781C 0.35 deleterious_low_confidence(0) possibly_damaging(0.623) TCGA-AA-A022-01 1 171085407 171085407 A - FMO3 Frame_Shift_Del p.K416Sfs*72 0.27 TCGA-AA-A022-01 1 172628264 172628264 G A FASLG 5'UTR 0.38 TCGA-AA-A022-01 1 17296919 17296919 C T CROCC Missense_Mutation p.R1875C 0.28 possibly_damaging(0.835) TCGA-AA-A022-01 1 17332216 17332216 G C ATP13A2 Missense_Mutation p.T23R 0.31 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-AA-A022-01 1 175365829 175365829 A G TNR Missense_Mutation p.L364P 0.30 tolerated(1) benign(0.002) TCGA-AA-A022-01 1 176863804 176863805 - G ASTN1 Frame_Shift_Ins p.L945Pfs*9 0.32 TCGA-AA-A022-01 1 17725321 17725321 C T PADI6 RNA 0.37 TCGA-AA-A022-01 1 17739585 17739585 G A RCC2 Missense_Mutation p.R433W 0.28 deleterious(0) benign(0.019) TCGA-AA-A022-01 1 177928011 177928011 C T SEC16B Silent p.L366L 0.36 TCGA-AA-A022-01 1 17930016 17930016 T - ARHGEF10L Frame_Shift_Del p.F122Sfs*8 0.16 TCGA-AA-A022-01 1 180775668 180775668 G A XPR1 Missense_Mutation p.R219H 0.41 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 1 181021450 181021450 C - MR1 Frame_Shift_Del p.P230Qfs*5 0.17 TCGA-AA-A022-01 1 181765941 181765941 C T CACNA1E Missense_Mutation p.R2116C 0.26 deleterious(0.02) probably_damaging(0.919) TCGA-AA-A022-01 1 193149734 193149735 - A B3GALT2 Frame_Shift_Ins p.S320Ffs*10 0.27 TCGA-AA-A022-01 1 1961755 1961755 C T GABRD 3'UTR 0.26 TCGA-AA-A022-01 1 198703511 198703511 C T PTPRC Missense_Mutation p.A745V 0.26 deleterious(0.03) possibly_damaging(0.708) TCGA-AA-A022-01 1 200378734 200378734 C T ZNF281 Missense_Mutation p.G34S 0.45 tolerated_low_confidence(0.09) unknown(0) TCGA-AA-A022-01 1 200946505 200946505 C A KIF21B Splice_Site p.X1387_splice 0.07 TCGA-AA-A022-01 1 201164969 201164969 A - IGFN1 Frame_Shift_Del p.N45Mfs*49 0.24 TCGA-AA-A022-01 1 201817695 201817695 G A IPO9 Missense_Mutation p.V163I 0.29 tolerated(0.08) benign(0.41) TCGA-AA-A022-01 1 203453089 203453089 C T PRELP Silent p.N259N 0.32 TCGA-AA-A022-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.21 TCGA-AA-A022-01 1 205065950 205065950 G - RBBP5 Frame_Shift_Del p.P419Hfs*9 0.26 TCGA-AA-A022-01 1 20518632 20518632 C T UBXN10 3'UTR 0.30 TCGA-AA-A022-01 1 206821067 206821067 C T DYRK3 Missense_Mutation p.A175V 0.34 deleterious(0.01) probably_damaging(0.979) TCGA-AA-A022-01 1 208062528 208062528 T - CD34 Frame_Shift_Del p.K262Sfs*6 0.26 TCGA-AA-A022-01 1 209790826 209790826 G A LAMB3 Nonsense_Mutation p.Q1053* 0.41 TCGA-AA-A022-01 1 21044131 21044131 G A KIF17 Silent p.R23R 0.77 TCGA-AA-A022-01 1 21187006 21187006 T C EIF4G3 Missense_Mutation p.N989S 0.36 tolerated(0.18) possibly_damaging(0.5) TCGA-AA-A022-01 1 214557491 214557491 G - PTPN14 Frame_Shift_Del p.Y570Tfs*29 0.25 TCGA-AA-A022-01 1 215793422 215793422 C T KCTD3 Missense_Mutation p.T637I 0.25 tolerated_low_confidence(0.11) benign(0.209) TCGA-AA-A022-01 1 216424432 216424432 T G USH2A Silent p.G660G 0.31 TCGA-AA-A022-01 1 22047660 22047660 C T USP48 Splice_Site p.X588_splice 0.29 TCGA-AA-A022-01 1 220702191 220702191 G T MARK1 Silent p.T9T 0.40 TCGA-AA-A022-01 1 221055680 221055680 C T HLX Missense_Mutation p.T316M 0.45 deleterious(0) probably_damaging(0.922) TCGA-AA-A022-01 1 22150901 22150901 C T LDLRAD2 3'UTR 0.47 TCGA-AA-A022-01 1 22333867 22333867 C T CELA3A Silent p.T167T 0.32 TCGA-AA-A022-01 1 223986098 223986098 C A TP53BP2 Silent p.R589R 0.40 TCGA-AA-A022-01 1 227751427 227751427 T C ZNF678 Splice_Site 0.10 TCGA-AA-A022-01 1 228362990 228362990 C T IBA57 Missense_Mutation p.R283W 0.46 deleterious(0) possibly_damaging(0.892) TCGA-AA-A022-01 1 228504571 228504571 A G OBSCN Missense_Mutation p.T5440A 0.38 possibly_damaging(0.721) TCGA-AA-A022-01 1 228559436 228559436 C T OBSCN Missense_Mutation p.P7943L 0.35 benign(0.083) TCGA-AA-A022-01 1 228879271 228879271 G A RHOU Silent p.A187A 0.38 TCGA-AA-A022-01 1 229568621 229568621 T C ACTA1 Missense_Mutation p.M46V 0.36 deleterious_low_confidence(0.02) benign(0) TCGA-AA-A022-01 1 229750133 229750133 G T TAF5L Missense_Mutation p.L33M 0.34 tolerated(0.27) benign(0.114) TCGA-AA-A022-01 1 229750175 229750175 G A TAF5L Missense_Mutation p.R19C 0.40 deleterious(0) probably_damaging(0.912) TCGA-AA-A022-01 1 230846185 230846185 C T AGT Missense_Mutation p.A138T 0.39 tolerated(0.32) benign(0.074) TCGA-AA-A022-01 1 231044529 231044529 G A TTC13 Silent p.D799D 0.33 TCGA-AA-A022-01 1 23417944 23417945 - G LUZP1 Frame_Shift_Ins p.T938Nfs*5 0.19 TCGA-AA-A022-01 1 235506500 235506500 T - GGPS1 3'UTR 0.28 TCGA-AA-A022-01 1 236145017 236145017 T C NID1 Missense_Mutation p.N1041D 0.30 tolerated(0.21) benign(0.052) TCGA-AA-A022-01 1 237777707 237777707 G A RYR2 Missense_Mutation p.R1760Q 0.35 benign(0.107) TCGA-AA-A022-01 1 237948066 237948066 A G RYR2 Missense_Mutation p.K4352E 0.16 benign(0.067) TCGA-AA-A022-01 1 241757691 241757691 C T OPN3 3'UTR 0.27 TCGA-AA-A022-01 1 242042227 242042227 C T EXO1 Missense_Mutation p.P564L 0.27 tolerated(0.09) benign(0.003) TCGA-AA-A022-01 1 242253159 242253159 T C PLD5 Silent p.V536V 0.30 TCGA-AA-A022-01 1 2440426 2440426 G A PANK4 Missense_Mutation p.R728C 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 1 24483648 24483648 C T IFNLR1 Missense_Mutation p.R512Q 0.27 tolerated(0.61) benign(0.165) TCGA-AA-A022-01 1 247319872 247319873 - T ZNF124 Frame_Shift_Ins p.M289Nfs*28 0.27 TCGA-AA-A022-01 1 248112171 248112174 CAAT - OR2L8 Frame_Shift_Del p.N5Kfs*30 0.36 TCGA-AA-A022-01 1 248224362 248224362 T C OR2L3 Missense_Mutation p.F127L 0.42 tolerated(0.13) benign(0.027) TCGA-AA-A022-01 1 248262920 248262920 G A OR2L13 Silent p.A81A 0.30 TCGA-AA-A022-01 1 248367073 248367073 G A OR2M3 Missense_Mutation p.R235H 0.35 tolerated(0.34) benign(0.002) TCGA-AA-A022-01 1 248487129 248487129 C G OR2M7 Missense_Mutation p.V248L 0.30 deleterious(0) probably_damaging(0.975) TCGA-AA-A022-01 1 248737659 248737659 G A OR2T34 Missense_Mutation p.P134S 0.27 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 1 24998908 24998908 A - SRRM1 3'UTR 0.18 TCGA-AA-A022-01 1 26488243 26488243 C T FAM110D Missense_Mutation p.T154M 0.45 tolerated(0.13) probably_damaging(0.959) TCGA-AA-A022-01 1 26515156 26515156 G A CNKSR1 Missense_Mutation p.R553H 0.39 tolerated(0.15) benign(0.001) TCGA-AA-A022-01 1 26646734 26646734 G A CD52 Missense_Mutation p.G43R 0.27 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AA-A022-01 1 26793695 26793695 C A DHDDS Intron 0.38 TCGA-AA-A022-01 1 27179294 27179294 C A ZDHHC18 Silent p.P329P 0.36 TCGA-AA-A022-01 1 27878507 27878507 G T AHDC1 Silent p.P40P 0.46 TCGA-AA-A022-01 1 28279863 28279863 A - SMPDL3B Frame_Shift_Del p.G173Vfs*31 0.23 TCGA-AA-A022-01 1 28599251 28599251 C - SESN2 Frame_Shift_Del p.P234Lfs*13 0.22 TCGA-AA-A022-01 1 28607257 28607257 C T SESN2 Missense_Mutation p.R463C 0.25 deleterious(0) probably_damaging(0.991) TCGA-AA-A022-01 1 28920438 28920438 G A RAB42 Missense_Mutation p.V43M 0.20 tolerated(0.52) benign(0.047) TCGA-AA-A022-01 1 31465299 31465299 G A PUM1 Nonsense_Mutation p.Q366* 0.37 TCGA-AA-A022-01 1 31898738 31898738 C T SERINC2 Silent p.C205C 0.29 TCGA-AA-A022-01 1 32090604 32090604 C A HCRTR1 Missense_Mutation p.F324L 0.30 tolerated(0.11) benign(0.01) TCGA-AA-A022-01 1 32157107 32157107 G A COL16A1 Missense_Mutation p.P437S 0.39 unknown(0) TCGA-AA-A022-01 1 32660512 32660512 C T TXLNA Missense_Mutation p.R453W 0.06 deleterious(0) probably_damaging(0.983) TCGA-AA-A022-01 1 33237921 33237921 T C KIAA1522 Silent p.L1047L 0.06 TCGA-AA-A022-01 1 33549681 33549681 C T ADC Silent p.L78L 0.39 TCGA-AA-A022-01 1 33764597 33764597 C T ZNF362 Missense_Mutation p.P405S 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AA-A022-01 1 34180305 34180305 G A CSMD2 Silent p.G1056G 0.41 TCGA-AA-A022-01 1 3425664 3425664 G A MEGF6 Silent p.G501G 0.31 TCGA-AA-A022-01 1 35250487 35250487 C T GJB3 Missense_Mutation p.R42C 0.33 deleterious(0) probably_damaging(0.982) TCGA-AA-A022-01 1 35579186 35579186 T - ZMYM1 Frame_Shift_Del p.L587* 0.21 TCGA-AA-A022-01 1 36068807 36068807 A - PSMB2 3'UTR 0.25 TCGA-AA-A022-01 1 36291531 36291531 T C AGO4 Silent p.S210S 0.34 TCGA-AA-A022-01 1 36359963 36359963 C T AGO1 Missense_Mutation p.R278C 0.31 deleterious(0) benign(0.004) TCGA-AA-A022-01 1 36384825 36384825 G A AGO1 Missense_Mutation p.R812Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 1 36505412 36505412 C T AGO3 Missense_Mutation p.H622Y 0.42 tolerated(0.07) possibly_damaging(0.461) TCGA-AA-A022-01 1 36886171 36886171 A T OSCP1 Missense_Mutation p.L289M 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 1 38034452 38034452 C A GNL2 Missense_Mutation p.R623I 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A022-01 1 39991356 39991356 G A BMP8A Silent p.A365A 0.22 TCGA-AA-A022-01 1 40236012 40236012 C T OXCT2 Missense_Mutation p.A306T 0.36 deleterious(0.01) possibly_damaging(0.789) TCGA-AA-A022-01 1 41483568 41483568 G A SLFNL1 Silent p.G232G 0.38 TCGA-AA-A022-01 1 42875747 42875747 G A RIMKLA Missense_Mutation p.V192M 0.14 deleterious(0) probably_damaging(0.975) TCGA-AA-A022-01 1 44386217 44386218 - G ST3GAL3 Frame_Shift_Ins 0.22 TCGA-AA-A022-01 1 44476503 44476503 C T SLC6A9 Missense_Mutation p.G101S 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 1 45484670 45484670 C T ZSWIM5 Missense_Mutation p.R1005H 0.26 deleterious(0.01) unknown(0) TCGA-AA-A022-01 1 46088691 46088691 C T CCDC17 Missense_Mutation p.G198R 0.29 tolerated(0.11) benign(0.109) TCGA-AA-A022-01 1 47078943 47078943 C T MOB3C Silent p.P69P 0.29 TCGA-AA-A022-01 1 4715475 4715475 G A AJAP1 5'UTR 0.48 TCGA-AA-A022-01 1 48764291 48764291 T - SPATA6 3'UTR 0.27 TCGA-AA-A022-01 1 52279738 52279738 A T NRD1 Missense_Mutation p.I616N 0.09 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 1 53370343 53370343 G A ECHDC2 Missense_Mutation p.A226V 0.31 deleterious(0.03) benign(0.141) TCGA-AA-A022-01 1 54375618 54375618 T G DIO1 Silent p.P232P 0.43 TCGA-AA-A022-01 1 54417905 54417906 GA - LRRC42 Frame_Shift_Del p.E79Gfs*26 0.28 TCGA-AA-A022-01 1 57395224 57395224 G - C8B Frame_Shift_Del p.I544Lfs*51 0.27 TCGA-AA-A022-01 1 61547569 61547569 A - NFIA 5'UTR 0.22 TCGA-AA-A022-01 1 61818202 61818202 G A NFIA Missense_Mutation p.A306T 0.28 tolerated(0.46) benign(0.075) TCGA-AA-A022-01 1 6191717 6191717 C T CHD5 Missense_Mutation p.R1079Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 1 6202342 6202342 A G CHD5 Missense_Mutation p.I761T 0.31 deleterious(0) probably_damaging(0.988) TCGA-AA-A022-01 1 63300481 63300481 C T ATG4C Silent p.C349C 0.33 TCGA-AA-A022-01 1 63902727 63902727 T C ALG6 3'UTR 0.41 TCGA-AA-A022-01 1 63991268 63991268 G A EFCAB7 Missense_Mutation p.A9T 0.30 tolerated(0.41) benign(0.004) TCGA-AA-A022-01 1 6521394 6521394 C T TNFRSF25 3'UTR 0.30 TCGA-AA-A022-01 1 65273018 65273018 C T RAVER2 Missense_Mutation p.T501M 0.36 tolerated(0.1) benign(0.312) TCGA-AA-A022-01 1 6640629 6640629 G A ZBTB48 5'UTR 0.34 TCGA-AA-A022-01 1 68895521 68895521 C T RPE65 Missense_Mutation p.A514T 0.23 deleterious(0) probably_damaging(0.971) TCGA-AA-A022-01 1 70226019 70226019 C T LRRC7 Silent p.F44F 0.34 TCGA-AA-A022-01 1 70697727 70697727 C T SRSF11 Intron 0.33 TCGA-AA-A022-01 1 74836080 74836080 T - FPGT-TNNI3K Intron 0.19 TCGA-AA-A022-01 1 75139253 75139253 G A C1orf173 5'UTR 0.37 TCGA-AA-A022-01 1 76254926 76254926 G A RABGGTB Missense_Mutation p.R65H 0.31 deleterious(0.04) benign(0.006) TCGA-AA-A022-01 1 76378661 76378661 A T MSH4 3'UTR 0.23 TCGA-AA-A022-01 1 7724297 7724297 G A CAMTA1 Missense_Mutation p.A564T 0.53 tolerated_low_confidence(0.88) benign(0.001) TCGA-AA-A022-01 1 7731097 7731097 G T CAMTA1 Missense_Mutation p.A927S 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-AA-A022-01 1 77528823 77528823 T - ST6GALNAC5 Frame_Shift_Del p.Q317Nfs*11 0.23 TCGA-AA-A022-01 1 78001725 78001725 C T AK5 Splice_Site p.X540_splice 0.31 TCGA-AA-A022-01 1 8418549 8418549 C T RERE Missense_Mutation p.R1349Q 0.38 unknown(0) TCGA-AA-A022-01 1 85035745 85035745 T - CTBS Frame_Shift_Del p.T132Hfs*9 0.25 TCGA-AA-A022-01 1 85113267 85113267 G T SSX2IP Missense_Mutation p.T565N 0.33 deleterious_low_confidence(0.02) benign(0.002) TCGA-AA-A022-01 1 85506829 85506829 A G MCOLN3 Missense_Mutation p.V87A 0.35 tolerated(0.12) possibly_damaging(0.573) TCGA-AA-A022-01 1 8927257 8927257 A T ENO1 Silent p.A121A 0.22 TCGA-AA-A022-01 1 94512499 94512499 T G ABCA4 Missense_Mutation p.N965T 0.06 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 1 95357871 95357871 T G SLC44A3 Missense_Mutation p.L552R 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 1 9783259 9783259 G A PIK3CD Missense_Mutation p.A835T 0.26 deleterious(0) probably_damaging(0.957) TCGA-AA-A022-01 20 11903989 11903989 C G BTBD3 Missense_Mutation p.S415C 0.38 deleterious(0) probably_damaging(0.992) TCGA-AA-A022-01 20 18445962 18445962 A G DZANK1 Missense_Mutation p.L14S 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 20 20018196 20018196 T C CRNKL1 Missense_Mutation p.Q717R 0.31 tolerated(0.21) benign(0.015) TCGA-AA-A022-01 20 20269417 20269417 C T C20orf26 Silent p.Y987Y 0.32 TCGA-AA-A022-01 20 20349193 20349193 G A INSM1 Silent p.A94A 0.22 TCGA-AA-A022-01 20 20493824 20493824 T C RALGAPA2 Missense_Mutation p.I1397V 0.33 tolerated(1) benign(0) TCGA-AA-A022-01 20 21686316 21686316 G A PAX1 5'UTR 0.28 TCGA-AA-A022-01 20 23028478 23028478 G A THBD Missense_Mutation p.A555V 0.38 deleterious(0.01) possibly_damaging(0.656) TCGA-AA-A022-01 20 23966527 23966527 C - GGTLC1 Frame_Shift_Del p.G130Afs*22 0.28 TCGA-AA-A022-01 20 25485532 25485532 C T NINL Missense_Mutation p.E234K 0.10 tolerated(0.41) benign(0.005) TCGA-AA-A022-01 20 2730144 2730144 G A EBF4 Missense_Mutation p.R242H 0.35 deleterious(0) probably_damaging(0.967) TCGA-AA-A022-01 20 2778691 2778691 T C CPXM1 Missense_Mutation p.T202A 0.32 deleterious(0.02) benign(0.34) TCGA-AA-A022-01 20 30640229 30640230 - G HCK Frame_Shift_Ins p.R4Afs*38 0.28 TCGA-AA-A022-01 20 32255961 32255961 C T ACTL10 Missense_Mutation p.H220Y 0.37 deleterious(0) benign(0.284) TCGA-AA-A022-01 20 32665039 32665039 C T RALY Silent p.S288S 0.32 TCGA-AA-A022-01 20 33439059 33439059 G A GGT7 Missense_Mutation p.A567V 0.08 tolerated(0.13) benign(0.084) TCGA-AA-A022-01 20 33513509 33513509 C T ACSS2 Missense_Mutation p.R569W 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 20 33524578 33524578 C T GSS Missense_Mutation p.R252Q 0.31 deleterious(0.05) benign(0.107) TCGA-AA-A022-01 20 33735083 33735083 C T EDEM2 5'UTR 0.39 TCGA-AA-A022-01 20 33879850 33879850 G A FAM83C Silent p.R86R 0.30 TCGA-AA-A022-01 20 34214276 34214276 C T CPNE1 Missense_Mutation p.V506M 0.45 deleterious(0.01) benign(0.221) TCGA-AA-A022-01 20 34292367 34292367 A - RBM39 3'UTR 0.22 TCGA-AA-A022-01 20 34783254 34783254 G T EPB41L1 Nonsense_Mutation p.E485* 0.37 TCGA-AA-A022-01 20 35421910 35421910 G A SOGA1 Silent p.Y1525Y 0.12 TCGA-AA-A022-01 20 35425352 35425352 G A SOGA1 Missense_Mutation p.R1139C 0.30 tolerated(0.17) possibly_damaging(0.466) TCGA-AA-A022-01 20 35431429 35431429 G C SOGA1 Missense_Mutation p.Q1057E 0.19 deleterious(0) benign(0.183) TCGA-AA-A022-01 20 39690066 39690066 C A TOP1 Silent p.R31R 0.40 TCGA-AA-A022-01 20 40125930 40125930 G A CHD6 Intron 0.26 TCGA-AA-A022-01 20 40733250 40733250 C T PTPRT Missense_Mutation p.D1167N 0.40 deleterious(0) probably_damaging(0.989) TCGA-AA-A022-01 20 40739031 40739031 C T PTPRT Missense_Mutation p.V1066I 0.30 tolerated(1) benign(0.003) TCGA-AA-A022-01 20 4163386 4163386 C T SMOX Silent p.Y420Y 0.33 TCGA-AA-A022-01 20 44144175 44144175 C T SPINT3 Missense_Mutation p.R25Q 0.32 tolerated(0.52) benign(0) TCGA-AA-A022-01 20 44641994 44641994 C A MMP9 Silent p.P477P 0.29 TCGA-AA-A022-01 20 46264965 46264965 C A NCOA3 Missense_Mutation p.P612H 0.34 tolerated(0.56) benign(0.365) TCGA-AA-A022-01 20 47733750 47733750 G A STAU1 Silent p.N515N 0.31 TCGA-AA-A022-01 20 47845326 47845326 G A DDX27 Missense_Mutation p.V292M 0.36 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 20 47887747 47887747 C T ZNFX1 Missense_Mutation p.R201H 0.30 tolerated(0.06) probably_damaging(0.998) TCGA-AA-A022-01 20 48098851 48098851 C T KCNB1 Missense_Mutation p.R56Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 20 48525036 48525036 G - SPATA2 5'UTR 0.23 TCGA-AA-A022-01 20 50769312 50769312 C T ZFP64 Silent p.T473T 0.43 TCGA-AA-A022-01 20 50769623 50769623 G T ZFP64 Missense_Mutation p.P370T 0.35 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 20 5157302 5157302 C T CDS2 Silent p.C100C 0.06 TCGA-AA-A022-01 20 55072343 55072343 C T GCNT7 5'UTR 0.34 TCGA-AA-A022-01 20 55904875 55904875 C T SPO11 5'UTR 0.39 TCGA-AA-A022-01 20 57392726 57392726 G - MIR296 RNA 0.20 TCGA-AA-A022-01 20 57782044 57782044 C A ZNF831 Silent p.R1320R 0.40 TCGA-AA-A022-01 20 58439223 58439223 T - SYCP2 3'UTR 0.44 TCGA-AA-A022-01 20 58514139 58514139 G A PPP1R3D Missense_Mutation p.A283V 0.43 tolerated(0.25) benign(0.048) TCGA-AA-A022-01 20 58547177 58547177 C T CDH26 Missense_Mutation p.T131M 0.30 tolerated(0.7) benign(0.004) TCGA-AA-A022-01 20 60485521 60485521 C A CDH4 Missense_Mutation p.A411E 0.31 deleterious(0) possibly_damaging(0.839) TCGA-AA-A022-01 20 60589748 60589748 C T TAF4 Missense_Mutation p.R459Q 0.39 probably_damaging(0.921) TCGA-AA-A022-01 20 60697758 60697758 C T LSM14B Silent p.S12S 0.27 TCGA-AA-A022-01 20 60709455 60709455 C T LSM14B 3'UTR 0.33 TCGA-AA-A022-01 20 60749678 60749678 A G SS18L1 Missense_Mutation p.Q381R 0.08 deleterious_low_confidence(0) unknown(0) TCGA-AA-A022-01 20 60885243 60885243 G A LAMA5 Silent p.T3575T 0.30 TCGA-AA-A022-01 20 61526425 61526425 C T DIDO1 Silent p.T769T 0.39 TCGA-AA-A022-01 20 61943276 61943277 - C COL20A1 Frame_Shift_Ins p.R561Efs*168 0.33 TCGA-AA-A022-01 20 62331798 62331798 C T ARFRP1 Silent p.T201T 0.48 TCGA-AA-A022-01 20 62333493 62333493 G A ARFRP1 Missense_Mutation p.A114V 0.34 tolerated(0.57) benign(0.396) TCGA-AA-A022-01 20 62367247 62367247 C A ZGPAT Silent p.T524T 0.37 TCGA-AA-A022-01 20 62630972 62630972 C T PRPF6 Nonsense_Mutation p.R295* 0.25 TCGA-AA-A022-01 21 19628948 19628948 C A CHODL Missense_Mutation p.L68I 0.14 deleterious(0) probably_damaging(0.955) TCGA-AA-A022-01 21 28327084 28327084 G A ADAMTS5 Missense_Mutation p.A404V 0.54 deleterious(0) possibly_damaging(0.889) TCGA-AA-A022-01 21 28338228 28338228 C T ADAMTS5 Silent p.A161A 0.16 TCGA-AA-A022-01 21 30332978 30332978 G A LTN1 Silent p.G784G 0.36 TCGA-AA-A022-01 21 33044494 33044495 TG - SCAF4 Frame_Shift_Del p.H887Qfs*30 0.13 TCGA-AA-A022-01 21 33296813 33296813 A - HUNK Frame_Shift_Del p.K100Rfs*18 0.32 TCGA-AA-A022-01 21 33692875 33692875 G T URB1 Missense_Mutation p.L1854I 0.07 deleterious(0.05) probably_damaging(0.925) TCGA-AA-A022-01 21 33694869 33694869 G A URB1 Silent p.S1753S 0.65 TCGA-AA-A022-01 21 34017964 34017966 GGA - SYNJ1 In_Frame_Del p.P1168del 0.13 TCGA-AA-A022-01 21 34443672 34443672 C T OLIG1 3'UTR 0.18 TCGA-AA-A022-01 21 37649322 37649322 C A DOPEY2 Missense_Mutation p.A1879D 0.44 tolerated(0.4) benign(0.005) TCGA-AA-A022-01 21 38117346 38117346 C - SIM2 Frame_Shift_Del p.L497* 0.27 TCGA-AA-A022-01 21 38309369 38309369 C T HLCS Missense_Mutation p.E126K 0.19 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 21 38884680 38884680 G A DYRK1A Missense_Mutation p.G713D 0.23 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AA-A022-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.14 TCGA-AA-A022-01 21 41033797 41033797 C T B3GALT5 3'UTR 0.17 TCGA-AA-A022-01 21 43161932 43161932 G - RIPK4 Frame_Shift_Del p.P474Rfs*90 0.22 TCGA-AA-A022-01 21 43547287 43547287 G A UMODL1 Silent p.T1283T 0.09 TCGA-AA-A022-01 21 43693453 43693453 C - ABCG1 Frame_Shift_Del p.R150Gfs*29 0.28 TCGA-AA-A022-01 21 43906545 43906545 C T RSPH1 Missense_Mutation p.G101S 0.11 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 21 45161415 45161415 C T PDXK Intron 0.19 TCGA-AA-A022-01 21 45175963 45175963 G A PDXK 3'UTR 0.26 TCGA-AA-A022-01 21 45649715 45649715 G A ICOSLG Intron 0.58 TCGA-AA-A022-01 21 45736382 45736382 C T PFKL Missense_Mutation p.T304M 0.32 deleterious(0) benign(0.015) TCGA-AA-A022-01 21 45821663 45821663 C T TRPM2 Silent p.F807F 0.41 TCGA-AA-A022-01 21 46396612 46396612 G A FAM207A Missense_Mutation p.R196Q 0.11 tolerated(0.08) probably_damaging(0.995) TCGA-AA-A022-01 21 47412098 47412098 G C COL6A1 Silent p.G401G 0.48 TCGA-AA-A022-01 21 47852061 47852061 G A PCNT Missense_Mutation p.A2895T 0.17 benign(0) TCGA-AA-A022-01 22 16287419 16287419 G T POTEH Missense_Mutation p.P156H 0.18 deleterious(0) benign(0.289) TCGA-AA-A022-01 22 17119535 17119535 C A TPTEP1 RNA 0.37 TCGA-AA-A022-01 22 17443537 17443537 C T GAB4 3'UTR 0.48 TCGA-AA-A022-01 22 17584432 17584432 C T IL17RA Missense_Mutation p.R271C 0.31 tolerated(0.06) benign(0.001) TCGA-AA-A022-01 22 18367052 18367052 G - MICAL3 Intron 0.22 TCGA-AA-A022-01 22 19492973 19492973 G A CDC45 Missense_Mutation p.V297M 0.41 tolerated(0.09) benign(0.244) TCGA-AA-A022-01 22 19867758 19867758 A G TXNRD2 Missense_Mutation p.C407R 0.27 deleterious(0) probably_damaging(0.994) TCGA-AA-A022-01 22 19967735 19967735 G A ARVCF Silent p.G309G 0.40 TCGA-AA-A022-01 22 20080367 20080367 A G DGCR8 Missense_Mutation p.I548V 0.32 tolerated(0.08) probably_damaging(0.977) TCGA-AA-A022-01 22 20723749 20723749 A - USP41 Frame_Shift_Del p.F199Lfs*8 0.28 TCGA-AA-A022-01 22 20812116 20812116 G A KLHL22 Silent p.Y428Y 0.37 TCGA-AA-A022-01 22 20918896 20918897 - GCA MED15 In_Frame_Ins p.Q209dup 0.23 TCGA-AA-A022-01 22 21084262 21084262 G A PI4KA Silent p.V1442V 0.34 TCGA-AA-A022-01 22 21224765 21224765 A G SNAP29 Silent p.K126K 0.32 TCGA-AA-A022-01 22 21327654 21327654 G A AIFM3 Silent p.S30S 0.31 TCGA-AA-A022-01 22 21351649 21351649 G A LZTR1 3'UTR 0.44 TCGA-AA-A022-01 22 22317241 22317241 T G TOP3B Missense_Mutation p.E410A 0.32 deleterious(0.01) possibly_damaging(0.809) TCGA-AA-A022-01 22 22937361 22937361 C - IGLV3-32 Frame_Shift_Del p.V62Cfs*29 0.12 TCGA-AA-A022-01 22 23523678 23523678 C T BCR Silent p.Y177Y 0.24 TCGA-AA-A022-01 22 24134056 24134057 - A SMARCB1 Frame_Shift_Ins p.T72Nfs*4 0.35 TCGA-AA-A022-01 22 24135750 24135750 C T SMARCB1 Silent p.H79H 0.24 TCGA-AA-A022-01 22 24810567 24810567 G A SPECC1L Silent p.A1110A 0.05 TCGA-AA-A022-01 22 26829563 26829563 C - ASPHD2 5'UTR 0.25 TCGA-AA-A022-01 22 26830029 26830029 C T ASPHD2 Missense_Mutation p.R150C 0.31 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 22 26862202 26862203 - G HPS4 Frame_Shift_Ins p.Q233Afs*25 0.32 TCGA-AA-A022-01 22 29695662 29695662 C T EWSR1 Silent p.P589P 0.35 TCGA-AA-A022-01 22 30688802 30688802 G A TBC1D10A Silent p.R370R 0.26 TCGA-AA-A022-01 22 30821837 30821837 C A MTFP1 5'UTR 0.47 TCGA-AA-A022-01 22 31492874 31492874 G A SMTN Missense_Mutation p.V673I 0.36 tolerated(0.25) benign(0.008) TCGA-AA-A022-01 22 31530136 31530136 C T INPP5J Missense_Mutation p.R550C 0.34 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-AA-A022-01 22 32017668 32017668 C T PISD Silent p.P141P 0.28 TCGA-AA-A022-01 22 32021781 32021781 C T PISD Silent p.A7A 0.42 TCGA-AA-A022-01 22 32586740 32586741 - T RFPL2 3'UTR 0.22 TCGA-AA-A022-01 22 34022259 34022259 C T LARGE Missense_Mutation p.V154I 0.32 tolerated(0.22) probably_damaging(0.997) TCGA-AA-A022-01 22 35689100 35689100 A G HMGXB4 Missense_Mutation p.Q585R 0.37 tolerated(0.12) benign(0.231) TCGA-AA-A022-01 22 36629217 36629217 C T APOL2 5'UTR 0.35 TCGA-AA-A022-01 22 36718564 36718564 G A MYH9 Silent p.G205G 0.40 TCGA-AA-A022-01 22 36737437 36737437 G A MYH9 Silent p.T156T 0.36 TCGA-AA-A022-01 22 37333806 37333806 G T CSF2RB Silent p.V652V 0.44 TCGA-AA-A022-01 22 37603003 37603003 G A SSTR3 Silent p.N280N 0.26 TCGA-AA-A022-01 22 38027025 38027025 C - GGA1 Frame_Shift_Del p.R485Gfs*31 0.29 TCGA-AA-A022-01 22 38097466 38097466 G C TRIOBP Missense_Mutation p.A32P 0.33 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-AA-A022-01 22 38323751 38323751 C T MICALL1 Missense_Mutation p.A600V 0.29 tolerated(0.13) benign(0.049) TCGA-AA-A022-01 22 38511538 38511538 C T PLA2G6 Missense_Mutation p.R677H 0.40 tolerated(0.32) benign(0.013) TCGA-AA-A022-01 22 39888064 39888064 T - MGAT3 3'UTR 0.24 TCGA-AA-A022-01 22 40797676 40797684 GCAGGTATA - SGSM3 Splice_Site p.X30_splice 0.30 TCGA-AA-A022-01 22 40814582 40814582 G A MKL1 Silent p.S620S 0.45 TCGA-AA-A022-01 22 42263037 42263037 A G SREBF2 Silent p.L97L 0.29 TCGA-AA-A022-01 22 42575629 42575629 C T TCF20 Missense_Mutation p.C1912Y 0.18 probably_damaging(1) TCGA-AA-A022-01 22 42606630 42606630 G - TCF20 Frame_Shift_Del p.P1561Lfs*54 0.23 TCGA-AA-A022-01 22 42607043 42607044 - TCCT TCF20 Frame_Shift_Ins p.L1424Gfs*21 0.29 TCGA-AA-A022-01 22 42972540 42972540 G A SERHL2 3'Flank 0.07 TCGA-AA-A022-01 22 43089594 43089594 C T A4GALT Missense_Mutation p.A122T 0.42 tolerated(0.31) benign(0.042) TCGA-AA-A022-01 22 43089757 43089757 G - A4GALT Frame_Shift_Del p.T68Pfs*46 0.38 TCGA-AA-A022-01 22 44543790 44543790 C T PARVB Silent p.S287S 0.43 TCGA-AA-A022-01 22 46644141 46644141 T C CDPF1 Missense_Mutation p.E14G 0.30 tolerated(0.1) benign(0.405) TCGA-AA-A022-01 22 46654849 46654849 C T PKDREJ Silent p.A1457A 0.27 TCGA-AA-A022-01 22 46859959 46859959 C T CELSR1 Silent p.P1276P 0.39 TCGA-AA-A022-01 22 46930923 46930923 G A CELSR1 Silent p.D715D 0.29 TCGA-AA-A022-01 22 50181256 50181256 C T BRD1 Intron 0.30 TCGA-AA-A022-01 22 50181303 50181303 C T BRD1 Intron 0.16 TCGA-AA-A022-01 22 50649279 50649279 G T SELO Missense_Mutation p.Q430H 0.37 tolerated(0.18) benign(0.008) TCGA-AA-A022-01 22 50688300 50688300 G A HDAC10 Silent p.H161H 0.32 TCGA-AA-A022-01 22 50704717 50704717 G A MAPK11 Missense_Mutation p.R234C 0.23 tolerated(0.09) probably_damaging(0.999) TCGA-AA-A022-01 22 50882377 50882377 C - PPP6R2 Frame_Shift_Del p.E864Rfs*10 0.28 TCGA-AA-A022-01 22 50900090 50900090 G A SBF1 Missense_Mutation p.R901C 0.50 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 22 50925232 50925232 C T MIOX 5'Flank 0.29 TCGA-AA-A022-01 22 50987858 50987858 C T KLHDC7B Silent p.Y421Y 0.39 TCGA-AA-A022-01 22 50988644 50988644 C - KLHDC7B 3'UTR 0.28 TCGA-AA-A022-01 2 100007106 100007106 C T EIF5B Missense_Mutation p.P896S 0.35 probably_damaging(0.992) TCGA-AA-A022-01 2 100167878 100167879 - A AFF3 3'UTR 0.22 TCGA-AA-A022-01 2 101192826 101192826 G T PDCL3 Missense_Mutation p.W196C 0.24 deleterious(0) probably_damaging(0.97) TCGA-AA-A022-01 2 101606759 101606759 C T NPAS2 Silent p.S623S 0.25 TCGA-AA-A022-01 2 102038222 102038222 G A RFX8 Silent p.D67D 0.36 TCGA-AA-A022-01 2 102083338 102083338 G A RFX8 5'UTR 0.41 TCGA-AA-A022-01 2 102957259 102957259 T C IL1RL1 Missense_Mutation p.V194A 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A022-01 2 103040281 103040281 A - IL18RAP Frame_Shift_Del p.K29Nfs*66 0.12 TCGA-AA-A022-01 2 105705463 105705463 A G MRPS9 Missense_Mutation p.N171D 0.23 tolerated(0.64) benign(0.001) TCGA-AA-A022-01 2 106729176 106729176 G A UXS1 Missense_Mutation p.P269S 0.35 deleterious(0.03) benign(0.402) TCGA-AA-A022-01 2 1079206 1079206 G A SNTG2 Silent p.T25T 0.35 TCGA-AA-A022-01 2 109374989 109374989 G - RANBP2 Frame_Shift_Del p.A864Lfs*3 0.21 TCGA-AA-A022-01 2 112834771 112834771 T C TMEM87B Silent p.D168D 0.05 TCGA-AA-A022-01 2 112944906 112944906 C T FBLN7 Silent p.R381R 0.41 TCGA-AA-A022-01 2 113033574 113033577 GACA - ZC3H6 Frame_Shift_Del p.D3Lfs*13 0.23 TCGA-AA-A022-01 2 113089876 113089876 A G ZC3H6 Silent p.P1127P 0.34 TCGA-AA-A022-01 2 113330330 113330330 G A POLR1B Missense_Mutation p.A756T 0.29 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 2 113332840 113332840 G A POLR1B Missense_Mutation p.S981N 0.34 deleterious(0) probably_damaging(0.98) TCGA-AA-A022-01 2 114195410 114195410 C T CBWD2 5'UTR 0.41 TCGA-AA-A022-01 2 114195577 114195578 CA - CBWD2 Frame_Shift_Del p.T45Nfs*23 0.30 TCGA-AA-A022-01 2 114513856 114513856 C T SLC35F5 Intron 0.33 TCGA-AA-A022-01 2 120125456 120125456 G A DBI Intron 0.32 TCGA-AA-A022-01 2 121685003 121685003 G A GLI2 Missense_Mutation p.R72K 0.36 deleterious(0.02) probably_damaging(0.965) TCGA-AA-A022-01 2 127809861 127809861 G A BIN1 Silent p.P447P 0.32 TCGA-AA-A022-01 2 128398504 128398506 CTT - LIMS2 In_Frame_Del p.K264del 0.29 TCGA-AA-A022-01 2 12858525 12858525 G A TRIB2 Missense_Mutation p.R31K 0.31 tolerated(1) benign(0.275) TCGA-AA-A022-01 2 128707882 128707883 - G SAP130 Frame_Shift_Ins p.R868Kfs*17 0.26 TCGA-AA-A022-01 2 128930222 128930222 A T UGGT1 Missense_Mutation p.K1060N 0.25 deleterious(0.02) possibly_damaging(0.735) TCGA-AA-A022-01 2 130739581 130739581 T - RAB6C 3'UTR 0.25 TCGA-AA-A022-01 2 130868150 130868150 C T POTEF Missense_Mutation p.A341T 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.906) TCGA-AA-A022-01 2 130939427 130939427 C - SMPD4 5'UTR 0.39 TCGA-AA-A022-01 2 131797860 131797860 C T ARHGEF4 Silent p.R317R 0.29 TCGA-AA-A022-01 2 135621025 135621025 G A ACMSD Missense_Mutation p.V104I 0.33 tolerated(0.07) benign(0.023) TCGA-AA-A022-01 2 136743055 136743055 G A DARS 5'UTR 0.32 TCGA-AA-A022-01 2 145156918 145156918 C T ZEB2 Silent p.A612A 0.28 TCGA-AA-A022-01 2 152132055 152132055 G A NMI Missense_Mutation p.R193C 0.28 tolerated(0.62) benign(0) TCGA-AA-A022-01 2 153529129 153529129 G A PRPF40A Missense_Mutation p.A405V 0.24 tolerated(0.17) possibly_damaging(0.787) TCGA-AA-A022-01 2 155566260 155566260 T G KCNJ3 Missense_Mutation p.L283R 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 15758382 15758382 A - DDX1 Frame_Shift_Del p.R400Dfs*4 0.23 TCGA-AA-A022-01 2 159481697 159481697 C A PKP4 Missense_Mutation p.P304H 0.19 deleterious(0.04) benign(0.372) TCGA-AA-A022-01 2 160623914 160623914 A G MARCH7 3'UTR 0.38 TCGA-AA-A022-01 2 160628452 160628453 TG - LY75 Frame_Shift_Del p.T1844Sfs*11 0.25 TCGA-AA-A022-01 2 160889514 160889514 G A PLA2R1 Missense_Mutation p.T266M 0.28 deleterious(0.04) possibly_damaging(0.505) TCGA-AA-A022-01 2 160901596 160901596 A T PLA2R1 Missense_Mutation p.L61Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 2 1652984 1652984 G - PXDN Frame_Shift_Del p.C857Afs*5 0.25 TCGA-AA-A022-01 2 1653244 1653244 C T PXDN Missense_Mutation p.V770M 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-AA-A022-01 2 165953817 165953817 T - SCN3A Frame_Shift_Del p.N1395Tfs*2 0.27 TCGA-AA-A022-01 2 166854686 166854686 C T SCN1A Splice_Site p.X1447_splice 0.07 TCGA-AA-A022-01 2 167055968 167055968 T G SCN9A Missense_Mutation p.E1716D 0.41 deleterious(0) benign(0.179) TCGA-AA-A022-01 2 169985073 169985073 T - LRP2 3'UTR 0.35 TCGA-AA-A022-01 2 170502600 170502603 TTCT - CCDC173 Frame_Shift_Del p.K469Nfs*9 0.38 TCGA-AA-A022-01 2 170668381 170668381 A - SSB 3'UTR 0.22 TCGA-AA-A022-01 2 175201997 175201997 C T AC018470.1 Missense_Mutation p.R52Q 0.42 tolerated_low_confidence(0.56) unknown(0) TCGA-AA-A022-01 2 178482803 178482803 C A TTC30A Missense_Mutation p.K209N 0.30 deleterious(0.04) probably_damaging(0.978) TCGA-AA-A022-01 2 179434153 179434153 T C TTN Missense_Mutation p.D25569G 0.36 TCGA-AA-A022-01 2 179475827 179475827 G A TTN Missense_Mutation p.A17010V 0.20 TCGA-AA-A022-01 2 179542873 179542874 - T TTN Frame_Shift_Ins p.V11325Sfs*13 0.23 TCGA-AA-A022-01 2 179615048 179615048 T - TTN Intron 0.26 TCGA-AA-A022-01 2 179634453 179634453 G A TTN Missense_Mutation p.T2952I 0.35 TCGA-AA-A022-01 2 183606013 183606014 - A DNAJC10 Frame_Shift_Ins p.N376Kfs*2 0.23 TCGA-AA-A022-01 2 185801410 185801410 T C ZNF804A Silent p.L429L 0.26 TCGA-AA-A022-01 2 187626997 187626997 T C FAM171B Missense_Mutation p.M643T 0.09 deleterious(0) probably_damaging(0.978) TCGA-AA-A022-01 2 189871077 189871077 C T COL3A1 Missense_Mutation p.R1034C 0.22 probably_damaging(0.996) TCGA-AA-A022-01 2 196545469 196545469 A - SLC39A10 Frame_Shift_Del p.R238Gfs*84 0.26 TCGA-AA-A022-01 2 196671483 196671483 C T DNAH7 Missense_Mutation p.R3386H 0.25 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 200790681 200790682 - T C2orf69 3'UTR 0.29 TCGA-AA-A022-01 2 201354922 201354922 G - KCTD18 Frame_Shift_Del p.T395Rfs*56 0.27 TCGA-AA-A022-01 2 202074042 202074042 A - CASP10 Frame_Shift_Del p.K392Nfs*26 0.10 TCGA-AA-A022-01 2 202139642 202139642 C T CASP8 Missense_Mutation p.S268L 0.35 tolerated(0.75) benign(0.012) TCGA-AA-A022-01 2 202141587 202141587 G - CASP8 Frame_Shift_Del p.G293Dfs*4 0.23 TCGA-AA-A022-01 2 202569302 202569302 T C ALS2 Silent p.K1571K 0.33 TCGA-AA-A022-01 2 202591522 202591522 G - ALS2 Frame_Shift_Del p.P1016Lfs*29 0.23 TCGA-AA-A022-01 2 203693800 203693800 G A ICA1L Intron 0.45 TCGA-AA-A022-01 2 203881066 203881066 A T NBEAL1 5'UTR 0.20 TCGA-AA-A022-01 2 203933177 203933177 G A NBEAL1 Missense_Mutation p.E193K 0.32 deleterious(0) possibly_damaging(0.514) TCGA-AA-A022-01 2 204016238 204016238 G A NBEAL1 Missense_Mutation p.R1809H 0.42 deleterious(0) probably_damaging(0.941) TCGA-AA-A022-01 2 205983712 205983712 G A PARD3B Missense_Mutation p.E250K 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 2 206036969 206036969 C T PARD3B Missense_Mutation p.A490V 0.36 deleterious(0) probably_damaging(0.993) TCGA-AA-A022-01 2 208994242 208994242 G A CRYGC Missense_Mutation p.R59W 0.35 deleterious(0.05) probably_damaging(0.994) TCGA-AA-A022-01 2 210698848 210698848 G T UNC80 Missense_Mutation p.K966N 0.32 probably_damaging(0.99) TCGA-AA-A022-01 2 21230334 21230334 G A APOB Missense_Mutation p.R3136C 0.34 benign(0.276) TCGA-AA-A022-01 2 21234677 21234677 C A APOB Missense_Mutation p.G1688V 0.33 possibly_damaging(0.902) TCGA-AA-A022-01 2 213403342 213403342 G A ERBB4 5'UTR 0.32 TCGA-AA-A022-01 2 216226754 216226754 C A FN1 Nonsense_Mutation p.E2434* 0.35 TCGA-AA-A022-01 2 216272025 216272025 C T FN1 Silent p.S846S 0.35 TCGA-AA-A022-01 2 217234762 217234762 C T MARCH4 Silent p.A74A 0.45 TCGA-AA-A022-01 2 217525350 217525350 C T IGFBP2 Silent p.G171G 0.29 TCGA-AA-A022-01 2 217541471 217541471 G A IGFBP5 3'UTR 0.27 TCGA-AA-A022-01 2 218700875 218700875 C T TNS1 Missense_Mutation p.A898T 0.10 tolerated(1) benign(0.061) TCGA-AA-A022-01 2 219507397 219507397 T C ZNF142 Missense_Mutation p.Q1281R 0.04 tolerated(0.73) benign(0.069) TCGA-AA-A022-01 2 219563960 219563960 C T STK36 Silent p.C1231C 0.38 TCGA-AA-A022-01 2 219854948 219854948 A G CRYBA2 3'UTR 0.38 TCGA-AA-A022-01 2 219894773 219894773 T C CCDC108 Missense_Mutation p.Y440C 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 220326765 220326765 C - SPEG Frame_Shift_Del p.T870Pfs*11 0.25 TCGA-AA-A022-01 2 220492742 220492742 G - SLC4A3 Frame_Shift_Del p.G11Afs*17 0.32 TCGA-AA-A022-01 2 223169587 223169587 G A CCDC140 3'UTR 0.47 TCGA-AA-A022-01 2 223917787 223917787 G - KCNE4 Frame_Shift_Del p.E82Rfs*3 0.27 TCGA-AA-A022-01 2 225781465 225781465 A G DOCK10 Missense_Mutation p.S94P 0.34 tolerated(0.34) benign(0.031) TCGA-AA-A022-01 2 228211954 228211954 G A MFF Silent p.S202S 0.07 TCGA-AA-A022-01 2 228884028 228884028 C A SPHKAP Missense_Mutation p.Q514H 0.34 tolerated(0.17) benign(0.026) TCGA-AA-A022-01 2 230272054 230272055 GT - DNER Frame_Shift_Del p.H539Lfs*2 0.20 TCGA-AA-A022-01 2 230724269 230724269 A G TRIP12 Silent p.A40A 0.30 TCGA-AA-A022-01 2 230902146 230902146 G A SLC16A14 Nonsense_Mutation p.R495* 0.12 TCGA-AA-A022-01 2 231266389 231266389 C T SP140L Missense_Mutation p.A504V 0.11 tolerated(0.46) benign(0.036) TCGA-AA-A022-01 2 234367038 234367038 G A DGKD Missense_Mutation p.A897T 0.35 tolerated(0.05) possibly_damaging(0.745) TCGA-AA-A022-01 2 234401949 234401949 G T USP40 Intron 0.32 TCGA-AA-A022-01 2 235950545 235950545 C T SH3BP4 Silent p.L378L 0.39 TCGA-AA-A022-01 2 236649682 236649682 C T AGAP1 Missense_Mutation p.P129L 0.29 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 237028945 237028945 G A AGAP1 Missense_Mutation p.D742N 0.33 tolerated(0.11) benign(0.021) TCGA-AA-A022-01 2 237489589 237489589 C T ACKR3 Missense_Mutation p.R161C 0.29 deleterious(0.04) benign(0.44) TCGA-AA-A022-01 2 237489664 237489664 G A ACKR3 Missense_Mutation p.V186I 0.26 tolerated(0.21) benign(0.056) TCGA-AA-A022-01 2 238253354 238253354 T C COL6A3 Missense_Mutation p.E2436G 0.11 unknown(0) TCGA-AA-A022-01 2 239079169 239079169 G A ILKAP 3'UTR 0.35 TCGA-AA-A022-01 2 239757281 239757281 G A TWIST2 Missense_Mutation p.S142N 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-AA-A022-01 2 239976530 239976530 C A HDAC4 Splice_Site p.X997_splice 0.30 TCGA-AA-A022-01 2 240085520 240085520 C T HDAC4 Missense_Mutation p.S197N 0.08 tolerated(0.59) benign(0.005) TCGA-AA-A022-01 2 240984767 240984767 G A OR6B3 Silent p.C241C 0.38 TCGA-AA-A022-01 2 241531450 241531450 G T CAPN10 Missense_Mutation p.A191S 0.39 tolerated(0.3) benign(0.232) TCGA-AA-A022-01 2 241538170 241538170 C T CAPN10 3'UTR 0.44 TCGA-AA-A022-01 2 242076594 242076594 C G PASK Missense_Mutation p.S321T 0.29 tolerated(0.29) possibly_damaging(0.466) TCGA-AA-A022-01 2 242077460 242077460 C T PASK Missense_Mutation p.G262R 0.30 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 242346972 242346972 C T FARP2 Missense_Mutation p.R118C 0.36 deleterious(0) probably_damaging(0.977) TCGA-AA-A022-01 2 24522848 24522848 C T ITSN2 Missense_Mutation p.R425H 0.37 deleterious(0.03) unknown(0) TCGA-AA-A022-01 2 25966572 25966572 C T ASXL2 Silent p.V878V 0.33 TCGA-AA-A022-01 2 26022282 26022282 C A ASXL2 Missense_Mutation p.E125D 0.07 tolerated(0.48) benign(0) TCGA-AA-A022-01 2 26204488 26204488 C T KIF3C Missense_Mutation p.G100D 0.43 probably_damaging(1) TCGA-AA-A022-01 2 26535919 26535919 C T GPR113 Silent p.A515A 0.35 TCGA-AA-A022-01 2 27302078 27302079 - C EMILIN1 Frame_Shift_Ins p.R51Pfs*23 0.23 TCGA-AA-A022-01 2 27532685 27532685 C T MPV17 3'UTR 0.12 TCGA-AA-A022-01 2 27545417 27545417 C - MPV17 Intron 0.28 TCGA-AA-A022-01 2 27549613 27549613 A G GTF3C2 Missense_Mutation p.F889L 0.37 deleterious(0.02) possibly_damaging(0.676) TCGA-AA-A022-01 2 27677513 27677513 G A IFT172 Missense_Mutation p.A1129V 0.33 deleterious(0) probably_damaging(0.986) TCGA-AA-A022-01 2 31155033 31155033 C A GALNT14 Missense_Mutation p.G325V 0.29 deleterious(0) probably_damaging(0.912) TCGA-AA-A022-01 2 33412086 33412086 G A LTBP1 Silent p.T455T 0.35 TCGA-AA-A022-01 2 33952443 33952443 C T AC009499.1 Intron 0.53 TCGA-AA-A022-01 2 33952844 33952844 G A AC009499.1 Intron 0.40 TCGA-AA-A022-01 2 37113865 37113865 C - STRN Frame_Shift_Del p.V346* 0.27 TCGA-AA-A022-01 2 38179034 38179034 G A RMDN2 Missense_Mutation p.D226N 0.39 tolerated_low_confidence(1) benign(0.006) TCGA-AA-A022-01 2 38298328 38298328 C T CYP1B1 Missense_Mutation p.R390H 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 38301883 38301883 C T CYP1B1 Missense_Mutation p.D217N 0.38 tolerated(0.17) benign(0.065) TCGA-AA-A022-01 2 42284408 42284408 T A PKDCC Missense_Mutation p.C424S 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 44058953 44058953 C T ABCG5 Silent p.A152A 0.39 TCGA-AA-A022-01 2 44531200 44531200 A G SLC3A1 Intron 0.42 TCGA-AA-A022-01 2 47205968 47205968 G A TTC7A Missense_Mutation p.C229Y 0.34 tolerated(1) benign(0.001) TCGA-AA-A022-01 2 50765595 50765595 A C NRXN1 Missense_Mutation p.L687V 0.34 tolerated(0.06) probably_damaging(0.98) TCGA-AA-A022-01 2 55195862 55195864 ATG - EML6 In_Frame_Del p.D1939del 0.23 TCGA-AA-A022-01 2 55800829 55800829 T - SMEK2 Frame_Shift_Del p.N564Tfs*4 0.23 TCGA-AA-A022-01 2 5839994 5839994 T - SOX11 3'UTR 0.28 TCGA-AA-A022-01 2 69098272 69098272 C T BMP10 Silent p.T73T 0.34 TCGA-AA-A022-01 2 69372532 69372532 C T ANTXR1 Intron 0.37 TCGA-AA-A022-01 2 70463305 70463305 T C TIA1 Missense_Mutation p.Y10C 0.40 deleterious(0) probably_damaging(0.992) TCGA-AA-A022-01 2 72360319 72360319 G A CYP26B1 Missense_Mutation p.R327W 0.33 deleterious(0.03) probably_damaging(0.97) TCGA-AA-A022-01 2 73518744 73518744 G A EGR4 Silent p.G537G 0.48 TCGA-AA-A022-01 2 73901106 73901106 G A ALMS1P RNA 0.29 TCGA-AA-A022-01 2 74074671 74074671 G A STAMBP Missense_Mutation p.R178Q 0.39 tolerated(0.44) probably_damaging(0.97) TCGA-AA-A022-01 2 74320707 74320707 C T TET3 Missense_Mutation p.R926W 0.22 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 74883687 74883687 G A SEMA4F Missense_Mutation p.A58T 0.29 tolerated(0.19) benign(0.001) TCGA-AA-A022-01 2 75907392 75907392 C T GCFC2 Missense_Mutation p.S580N 0.29 tolerated(0.7) benign(0.134) TCGA-AA-A022-01 2 77748890 77748890 C T LRRTM4 Intron 0.34 TCGA-AA-A022-01 2 79253280 79253280 C T REG3G Silent p.L21L 0.32 TCGA-AA-A022-01 2 80530343 80530343 G A LRRTM1 Missense_Mutation p.A201V 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A022-01 2 84686557 84686557 G A SUCLG1 5'UTR 0.35 TCGA-AA-A022-01 2 85892794 85892794 G A SFTPB Silent p.L185L 0.33 TCGA-AA-A022-01 2 86269132 86269132 C T POLR1A Missense_Mutation p.R1151H 0.35 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 2 86676998 86676998 G A KDM3A Silent p.R85R 0.29 TCGA-AA-A022-01 2 89036160 89036160 C T RPIA Silent p.G235G 0.37 TCGA-AA-A022-01 2 89246914 89246914 C T IGKV1-5 Missense_Mutation p.G86S 0.32 deleterious(0.01) possibly_damaging(0.872) TCGA-AA-A022-01 2 89952886 89952886 C T IGKV1D-33 Silent p.D2D 0.27 TCGA-AA-A022-01 2 95940539 95940539 G A PROM2 Missense_Mutation p.R69H 0.31 tolerated(0.32) benign(0.094) TCGA-AA-A022-01 2 97474980 97474980 G A CNNM4 Intron 0.31 TCGA-AA-A022-01 2 98275450 98275450 G A ACTR1B Missense_Mutation p.T111M 0.41 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 2 99136477 99136477 C T INPP4A 5'UTR 0.33 TCGA-AA-A022-01 2 99227329 99227329 C T UNC50 Silent p.G124G 0.34 TCGA-AA-A022-01 3 107768491 107768491 T G CD47 Missense_Mutation p.K314N 0.25 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-AA-A022-01 3 108278849 108278849 T C KIAA1524 Silent p.R618R 0.25 TCGA-AA-A022-01 3 10953798 10953798 G T SLC6A11 Missense_Mutation p.Q305H 0.27 deleterious(0) probably_damaging(0.986) TCGA-AA-A022-01 3 112357963 112357963 C T CCDC80 Missense_Mutation p.G264S 0.30 tolerated(1) probably_damaging(0.982) TCGA-AA-A022-01 3 112358362 112358362 G A CCDC80 Missense_Mutation p.R131C 0.43 deleterious(0) possibly_damaging(0.876) TCGA-AA-A022-01 3 112997617 112997617 C T BOC Silent p.H600H 0.34 TCGA-AA-A022-01 3 113323794 113323794 G A SIDT1 Missense_Mutation p.V459M 0.31 deleterious(0) probably_damaging(0.993) TCGA-AA-A022-01 3 114070445 114070445 G A ZBTB20 Silent p.S160S 0.35 TCGA-AA-A022-01 3 11606279 11606279 G A VGLL4 Missense_Mutation p.R163W 0.44 deleterious(0) probably_damaging(0.992) TCGA-AA-A022-01 3 120049969 120049969 G A LRRC58 3'UTR 0.26 TCGA-AA-A022-01 3 121725968 121725968 G T ILDR1 Silent p.R33R 0.30 TCGA-AA-A022-01 3 12195143 12195143 A G TIMP4 Silent p.L183L 0.31 TCGA-AA-A022-01 3 122002574 122002574 C T CASR Silent p.S601S 0.36 TCGA-AA-A022-01 3 123010115 123010115 G A ADCY5 Missense_Mutation p.R1058C 0.44 deleterious(0.01) benign(0.055) TCGA-AA-A022-01 3 124048822 124048822 A G KALRN Missense_Mutation p.T465A 0.35 tolerated(0.59) benign(0.051) TCGA-AA-A022-01 3 124141677 124141677 A - KALRN Frame_Shift_Del p.D854Tfs*33 0.21 TCGA-AA-A022-01 3 126735391 126735391 C - PLXNA1 Frame_Shift_Del p.Q1019Rfs*22 0.26 TCGA-AA-A022-01 3 127358286 127358286 G A PODXL2 Missense_Mutation p.R90Q 0.41 deleterious(0.01) possibly_damaging(0.787) TCGA-AA-A022-01 3 127379500 127379500 G C PODXL2 Missense_Mutation p.S210T 0.33 tolerated(0.26) benign(0.007) TCGA-AA-A022-01 3 127820454 127820454 C T RUVBL1 Missense_Mutation p.R184Q 0.28 deleterious(0.03) benign(0.045) TCGA-AA-A022-01 3 129251142 129251142 G A RHO Silent p.T193T 0.27 TCGA-AA-A022-01 3 130285704 130285704 G A COL6A6 Missense_Mutation p.A481T 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 3 132423134 132423134 C T NPHP3 Missense_Mutation p.G478S 0.27 tolerated(0.09) possibly_damaging(0.849) TCGA-AA-A022-01 3 134077486 134077486 C A AMOTL2 Missense_Mutation p.G727V 0.05 tolerated(0.06) probably_damaging(0.995) TCGA-AA-A022-01 3 137483813 137483813 C T SOX14 Missense_Mutation p.R63W 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 3 138191502 138191502 G A ESYT3 Missense_Mutation p.G680R 0.28 deleterious(0.05) benign(0.062) TCGA-AA-A022-01 3 138224303 138224303 A G CEP70 Missense_Mutation p.L352P 0.19 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 3 14183281 14183281 A - TMEM43 Frame_Shift_Del p.K398Sfs*17 0.21 TCGA-AA-A022-01 3 14223156 14223156 C T LSM3 Nonsense_Mutation p.R40* 0.28 TCGA-AA-A022-01 3 142840727 142840727 C T CHST2 Missense_Mutation p.R357C 0.46 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 3 14558584 14558584 G A GRIP2 RNA 0.38 TCGA-AA-A022-01 3 149087702 149087702 C A TM4SF1 Intron 0.38 TCGA-AA-A022-01 3 151463407 151463407 C T AADACL2 Missense_Mutation p.T181I 0.33 tolerated(0.12) possibly_damaging(0.794) TCGA-AA-A022-01 3 151475000 151475000 G T AADACL2 Missense_Mutation p.R275I 0.27 deleterious(0.05) possibly_damaging(0.883) TCGA-AA-A022-01 3 152554162 152554162 C T P2RY1 Silent p.N197N 0.24 TCGA-AA-A022-01 3 152880597 152880598 TT - RAP2B Frame_Shift_Del p.F39Lfs*6 0.25 TCGA-AA-A022-01 3 153993877 153993877 C T DHX36 3'UTR 0.35 TCGA-AA-A022-01 3 154056048 154056048 C T GPR149 Missense_Mutation p.A546T 0.25 deleterious(0.05) benign(0.014) TCGA-AA-A022-01 3 15497437 15497437 G A COLQ Silent p.D388D 0.34 TCGA-AA-A022-01 3 155628567 155628567 A C GMPS Missense_Mutation p.N205H 0.11 deleterious(0.04) probably_damaging(0.927) TCGA-AA-A022-01 3 157839900 157839900 C T RSRC1 Missense_Mutation p.R3C 0.13 tolerated_low_confidence(0.09) unknown(0) TCGA-AA-A022-01 3 158322930 158322930 C G MLF1 Nonsense_Mutation p.S280* 0.08 TCGA-AA-A022-01 3 160135515 160135515 G A SMC4 Missense_Mutation p.R481Q 0.39 tolerated(0.34) benign(0.009) TCGA-AA-A022-01 3 160233272 160233272 G A KPNA4 Missense_Mutation p.L334F 0.34 deleterious(0) probably_damaging(0.993) TCGA-AA-A022-01 3 161214715 161214715 G A OTOL1 Missense_Mutation p.M40I 0.34 tolerated(0.43) unknown(0) TCGA-AA-A022-01 3 16358512 16358512 C T RFTN1 Silent p.L520L 0.38 TCGA-AA-A022-01 3 167039927 167039927 A T ZBBX Missense_Mutation p.L321I 0.32 deleterious(0.03) probably_damaging(0.974) TCGA-AA-A022-01 3 169485433 169485433 A T ACTRT3 Silent p.S302S 0.34 TCGA-AA-A022-01 3 169574279 169574279 G T LRRC31 Missense_Mutation p.P223H 0.40 tolerated(0.15) possibly_damaging(0.764) TCGA-AA-A022-01 3 169998082 169998082 G A PRKCI Missense_Mutation p.R258Q 0.07 tolerated(0.07) probably_damaging(0.995) TCGA-AA-A022-01 3 169998104 169998104 T A PRKCI Nonsense_Mutation p.Y265* 0.10 TCGA-AA-A022-01 3 172165374 172165374 G A GHSR Intron 0.36 TCGA-AA-A022-01 3 176763959 176763959 C T TBL1XR1 Missense_Mutation p.A295T 0.33 tolerated(0.14) possibly_damaging(0.701) TCGA-AA-A022-01 3 181431402 181431402 C T SOX2 3'UTR 0.11 TCGA-AA-A022-01 3 182755030 182755030 C T MCCC1 Missense_Mutation p.D524N 0.29 tolerated(0.36) benign(0.004) TCGA-AA-A022-01 3 184008628 184008628 C T ECE2 Missense_Mutation p.T723M 0.34 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 3 185209377 185209377 T C TMEM41A Missense_Mutation p.Q248R 0.30 tolerated(0.25) benign(0) TCGA-AA-A022-01 3 185978295 185978295 G A DGKG Missense_Mutation p.R453W 0.26 tolerated(0.11) probably_damaging(0.971) TCGA-AA-A022-01 3 186572213 186572213 G A ADIPOQ Missense_Mutation p.C152Y 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 3 189507524 189507524 G - TP63 Intron 0.25 TCGA-AA-A022-01 3 195507899 195507899 C T MUC4 Missense_Mutation p.A3518T 0.12 benign(0.048) TCGA-AA-A022-01 3 196229864 196229864 A G RNF168 Missense_Mutation p.W61R 0.25 deleterious(0) probably_damaging(0.982) TCGA-AA-A022-01 3 196626861 196626861 C T SENP5 Silent p.I562I 0.32 TCGA-AA-A022-01 3 25668727 25668727 C T TOP2B Missense_Mutation p.R651H 0.32 deleterious(0) probably_damaging(0.931) TCGA-AA-A022-01 3 2613112 2613112 A G CNTN4 5'UTR 0.34 TCGA-AA-A022-01 3 27436082 27436082 C T SLC4A7 Missense_Mutation p.R1006H 0.31 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 3 33450240 33450240 T C UBP1 Missense_Mutation p.K290R 0.36 tolerated(0.21) benign(0.01) TCGA-AA-A022-01 3 36422209 36422209 C T STAC Missense_Mutation p.P25L 0.47 deleterious(0) possibly_damaging(0.747) TCGA-AA-A022-01 3 38043296 38043296 G A VILL Missense_Mutation p.G475D 0.35 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 3 38319085 38319085 G A SLC22A13 3'UTR 0.44 TCGA-AA-A022-01 3 38647507 38647507 C T SCN5A Missense_Mutation p.A425T 0.44 tolerated(0.16) probably_damaging(0.998) TCGA-AA-A022-01 3 38991804 38991804 C T SCN11A Missense_Mutation p.R17H 0.37 tolerated(0.06) benign(0.091) TCGA-AA-A022-01 3 39433494 39433494 A - SLC25A38 Frame_Shift_Del p.N204Ifs*2 0.26 TCGA-AA-A022-01 3 4345510 4345510 G - SETMAR Intron 0.21 TCGA-AA-A022-01 3 43618556 43618556 C T ANO10 Missense_Mutation p.G264S 0.41 tolerated(0.4) benign(0.004) TCGA-AA-A022-01 3 44312243 44312243 C T TOPAZ1 Missense_Mutation p.R1105C 0.39 deleterious(0.02) probably_damaging(0.99) TCGA-AA-A022-01 3 44496789 44496789 T C ZNF445 Missense_Mutation p.R85G 0.35 deleterious(0) benign(0.415) TCGA-AA-A022-01 3 45823591 45823591 C T SLC6A20 Silent p.P82P 0.30 TCGA-AA-A022-01 3 46415067 46415067 G A CCR5 Missense_Mutation p.R225Q 0.31 tolerated(0.06) benign(0.407) TCGA-AA-A022-01 3 46416395 46416395 C T CCR5 3'UTR 0.36 TCGA-AA-A022-01 3 46491493 46491493 G A LTF Missense_Mutation p.P303L 0.34 tolerated(0.13) benign(0.044) TCGA-AA-A022-01 3 47040312 47040312 C T NBEAL2 Silent p.D1109D 0.26 TCGA-AA-A022-01 3 47462191 47462191 C T SCAP Silent p.T472T 0.50 TCGA-AA-A022-01 3 47891428 47891428 G A DHX30 Missense_Mutation p.V1135M 0.40 tolerated(0.11) benign(0.365) TCGA-AA-A022-01 3 48465456 48465456 G T PLXNB1 Missense_Mutation p.L189M 0.33 deleterious(0.01) probably_damaging(1) TCGA-AA-A022-01 3 48474560 48474560 C T CCDC51 Missense_Mutation p.R165H 0.42 deleterious(0) probably_damaging(0.977) TCGA-AA-A022-01 3 48630626 48630628 GAA - COL7A1 In_Frame_Del p.F197del 0.27 TCGA-AA-A022-01 3 48677788 48677788 C T CELSR3 Missense_Mutation p.R3077Q 0.35 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-AA-A022-01 3 48694192 48694192 G A CELSR3 Silent p.N1446N 0.43 TCGA-AA-A022-01 3 48727116 48727116 C T IP6K2 Missense_Mutation p.R212H 0.05 tolerated(0.59) possibly_damaging(0.899) TCGA-AA-A022-01 3 49569501 49569501 G A DAG1 Silent p.P519P 0.37 TCGA-AA-A022-01 3 49693908 49693908 C T BSN Missense_Mutation p.R2307W 0.34 unknown(0) TCGA-AA-A022-01 3 49722917 49722920 GATT - MST1 Frame_Shift_Del p.I470Wfs*55 0.31 TCGA-AA-A022-01 3 49756178 49756178 C T AMIGO3 Missense_Mutation p.A241T 0.61 deleterious(0.01) benign(0.164) TCGA-AA-A022-01 3 50005234 50005234 C T RBM6 Missense_Mutation p.R126W 0.32 deleterious(0.01) probably_damaging(0.981) TCGA-AA-A022-01 3 50380623 50380623 C T ZMYND10 Silent p.Q175Q 0.33 TCGA-AA-A022-01 3 51127717 51127717 C T DOCK3 Silent p.H216H 0.07 TCGA-AA-A022-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.27 TCGA-AA-A022-01 3 51418506 51418506 C - DOCK3 Frame_Shift_Del p.T1872Qfs*25 0.29 TCGA-AA-A022-01 3 51431691 51431691 A - RBM15B 3'UTR 0.19 TCGA-AA-A022-01 3 51696446 51696446 C T RAD54L2 Silent p.S1138S 0.39 TCGA-AA-A022-01 3 52004098 52004098 G - ABHD14B Frame_Shift_Del p.P105Rfs*3 0.27 TCGA-AA-A022-01 3 52005609 52005609 G T ABHD14A 5'Flank 0.36 TCGA-AA-A022-01 3 52237926 52237926 G A ALAS1 Missense_Mutation p.D159N 0.39 tolerated(0.23) benign(0.002) TCGA-AA-A022-01 3 52548799 52548799 C T STAB1 Missense_Mutation p.T1254M 0.38 tolerated(0.08) benign(0.018) TCGA-AA-A022-01 3 52555387 52555387 C T STAB1 Silent p.G1973G 0.36 TCGA-AA-A022-01 3 53694272 53694272 C T CACNA1D Nonsense_Mutation p.R246* 0.25 TCGA-AA-A022-01 3 53820895 53820895 G T CACNA1D Missense_Mutation p.Q1633H 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-AA-A022-01 3 53845152 53845152 G A CACNA1D Missense_Mutation p.E2089K 0.36 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-AA-A022-01 3 53899003 53899003 G A IL17RB Missense_Mutation p.V393I 0.32 tolerated(1) benign(0.002) TCGA-AA-A022-01 3 57390698 57390698 A - DNAH12 Frame_Shift_Del p.F2232Lfs*15 0.24 TCGA-AA-A022-01 3 57509529 57509529 C G DNAH12 Splice_Site p.X84_splice 0.37 TCGA-AA-A022-01 3 57545252 57545253 - A PDE12 Intron 0.27 TCGA-AA-A022-01 3 58155458 58155458 C T FLNB Missense_Mutation p.A2551V 0.23 tolerated(0.33) probably_damaging(0.916) TCGA-AA-A022-01 3 58302694 58302694 A - RPP14 Frame_Shift_Del p.K99Nfs*6 0.19 TCGA-AA-A022-01 3 58519857 58519857 G T ACOX2 Missense_Mutation p.D113E 0.39 tolerated(0.4) benign(0.015) TCGA-AA-A022-01 3 62253431 62253431 G T PTPRG Missense_Mutation p.R937S 0.48 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 3 71247474 71247474 G A FOXP1 Missense_Mutation p.S20L 0.35 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-AA-A022-01 3 87017955 87017955 C T VGLL3 Missense_Mutation p.R241H 0.31 tolerated(0.51) benign(0) TCGA-AA-A022-01 3 87295033 87295033 C T CHMP2B Missense_Mutation p.A99V 0.34 deleterious(0.01) possibly_damaging(0.86) TCGA-AA-A022-01 3 89468398 89468398 A - EPHA3 Frame_Shift_Del p.E647Rfs*9 0.24 TCGA-AA-A022-01 3 9517543 9517543 C - SETD5 Frame_Shift_Del p.T1366Kfs*4 0.21 TCGA-AA-A022-01 3 9547736 9547736 G A LHFPL4 Silent p.N186N 0.37 TCGA-AA-A022-01 3 97596057 97596057 C A CRYBG3 Missense_Mutation p.L59I 0.43 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-AA-A022-01 3 98235919 98235919 G A CLDND1 Missense_Mutation p.T196M 0.30 deleterious(0.01) probably_damaging(0.917) TCGA-AA-A022-01 3 9985631 9985631 G A CRELD1 Missense_Mutation p.R365H 0.37 tolerated(0.16) benign(0.015) TCGA-AA-A022-01 4 1019076 1019076 T A FGFRL1 Missense_Mutation p.S486T 0.22 tolerated(1) benign(0.005) TCGA-AA-A022-01 4 103964459 103964459 G A SLC9B2 Silent p.S380S 0.46 TCGA-AA-A022-01 4 103987657 103987657 G A SLC9B2 Missense_Mutation p.T33I 0.04 tolerated(0.2) benign(0.042) TCGA-AA-A022-01 4 111026731 111026731 C T ELOVL6 Missense_Mutation p.R48Q 0.34 tolerated(1) benign(0.044) TCGA-AA-A022-01 4 113108276 113108276 A G C4orf32 3'UTR 0.38 TCGA-AA-A022-01 4 113298835 113298835 T C ALPK1 Intron 0.33 TCGA-AA-A022-01 4 113508865 113508865 C A C4orf21 Missense_Mutation p.E1116D 0.31 deleterious(0.01) benign(0.029) TCGA-AA-A022-01 4 114275560 114275560 C T ANK2 Missense_Mutation p.S1929L 0.31 possibly_damaging(0.597) TCGA-AA-A022-01 4 114279199 114279200 CT - ANK2 Frame_Shift_Del p.S3144* 0.31 TCGA-AA-A022-01 4 114823485 114823487 TTC - ARSJ In_Frame_Del p.K582del 0.36 TCGA-AA-A022-01 4 119660425 119660425 C T SEC24D Silent p.T752T 0.22 TCGA-AA-A022-01 4 121737698 121737698 C - PRDM5 Frame_Shift_Del p.D259Mfs*15 0.24 TCGA-AA-A022-01 4 122740711 122740711 G - CCNA2 Frame_Shift_Del p.P273Qfs*3 0.23 TCGA-AA-A022-01 4 122791562 122791562 C A BBS7 5'UTR 0.27 TCGA-AA-A022-01 4 123246880 123246880 T C KIAA1109 Intron 0.40 TCGA-AA-A022-01 4 123317445 123317445 G A ADAD1 Missense_Mutation p.V213I 0.26 tolerated(0.24) benign(0.013) TCGA-AA-A022-01 4 123536968 123536968 A - IL21 Frame_Shift_Del p.S77Pfs*8 0.25 TCGA-AA-A022-01 4 125593026 125593026 G A ANKRD50 Missense_Mutation p.A469V 0.30 tolerated(0.5) benign(0.008) TCGA-AA-A022-01 4 126238149 126238149 G T FAT4 Missense_Mutation p.G195C 0.40 probably_damaging(1) TCGA-AA-A022-01 4 126239891 126239891 C T FAT4 Silent p.N775N 0.30 TCGA-AA-A022-01 4 126412071 126412071 G A FAT4 Silent p.L4698L 0.05 TCGA-AA-A022-01 4 126412535 126412535 T C FAT4 Missense_Mutation p.M4853T 0.31 probably_damaging(0.943) TCGA-AA-A022-01 4 13383174 13383177 GTAA - RAB28 Frame_Shift_Del p.L145Gfs*37 0.35 TCGA-AA-A022-01 4 134071185 134071185 C T PCDH10 5'UTR 0.50 TCGA-AA-A022-01 4 134072099 134072099 C T PCDH10 Silent p.L268L 0.34 TCGA-AA-A022-01 4 134072551 134072551 C - PCDH10 Frame_Shift_Del p.L421Wfs*11 0.22 TCGA-AA-A022-01 4 135121319 135121319 G A PABPC4L Nonsense_Mutation p.R344* 0.30 TCGA-AA-A022-01 4 13543759 13543759 C T NKX3-2 Missense_Mutation p.R287H 0.42 tolerated(0.05) probably_damaging(0.996) TCGA-AA-A022-01 4 142143532 142143532 A - ZNF330 Frame_Shift_Del p.K5Rfs*18 0.35 TCGA-AA-A022-01 4 146468035 146468035 G A SMAD1 Missense_Mutation p.R319Q 0.35 deleterious(0.03) probably_damaging(0.928) TCGA-AA-A022-01 4 153244184 153244184 C T FBXW7 Missense_Mutation p.R658Q 0.25 tolerated(0.15) probably_damaging(0.993) TCGA-AA-A022-01 4 154517447 154517447 A G KIAA0922 Missense_Mutation p.H678R 0.35 tolerated(0.59) benign(0.017) TCGA-AA-A022-01 4 155155875 155155875 C T DCHS2 Missense_Mutation p.R2855H 0.38 tolerated(0.4) benign(0.006) TCGA-AA-A022-01 4 155254578 155254578 G A DCHS2 Missense_Mutation p.R429W 0.49 tolerated(0.19) benign(0) TCGA-AA-A022-01 4 155411088 155411088 C T DCHS2 Missense_Mutation p.G474R 0.19 deleterious(0) probably_damaging(0.99) TCGA-AA-A022-01 4 155411897 155411897 T A DCHS2 Missense_Mutation p.Y204F 0.24 deleterious(0) probably_damaging(0.997) TCGA-AA-A022-01 4 156137318 156137318 A - NPY2R 3'UTR 0.28 TCGA-AA-A022-01 4 156826238 156826238 C T TDO2 Missense_Mutation p.A54V 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-AA-A022-01 4 15689531 15689531 A - FAM200B Frame_Shift_Del p.K312Nfs*3 0.23 TCGA-AA-A022-01 4 164393673 164393673 C T TKTL2 Missense_Mutation p.R405Q 0.46 deleterious(0.02) possibly_damaging(0.784) TCGA-AA-A022-01 4 168155223 168155223 G A SPOCK3 Silent p.D34D 0.17 TCGA-AA-A022-01 4 1725510 1725510 G T TACC3 Missense_Mutation p.S73I 0.30 deleterious(0) possibly_damaging(0.497) TCGA-AA-A022-01 4 17516848 17516848 G A CLRN2 5'UTR 0.34 TCGA-AA-A022-01 4 175749941 175749941 G A GLRA3 Missense_Mutation p.R8W 0.31 deleterious_low_confidence(0.01) benign(0.041) TCGA-AA-A022-01 4 183713901 183713901 C T TENM3 Nonsense_Mutation p.R2026* 0.44 TCGA-AA-A022-01 4 1843106 1843106 C T LETM1 Missense_Mutation p.G188S 0.33 deleterious(0.05) probably_damaging(0.918) TCGA-AA-A022-01 4 185698119 185698119 C A ACSL1 Nonsense_Mutation p.G166* 0.05 TCGA-AA-A022-01 4 185709846 185709846 C T ACSL1 Missense_Mutation p.D79N 0.31 tolerated(0.46) benign(0.004) TCGA-AA-A022-01 4 186296770 186296770 G A LRP2BP Silent p.D109D 0.32 TCGA-AA-A022-01 4 187540603 187540603 G A FAT1 Silent p.D2379D 0.28 TCGA-AA-A022-01 4 1940200 1940200 C T WHSC1 Missense_Mutation p.T566M 0.35 tolerated(0.14) benign(0.012) TCGA-AA-A022-01 4 22389651 22389651 C T GPR125 Missense_Mutation p.E1215K 0.33 tolerated(0.35) benign(0.035) TCGA-AA-A022-01 4 23816079 23816079 T C PPARGC1A Missense_Mutation p.N343D 0.33 tolerated(0.4) benign(0.179) TCGA-AA-A022-01 4 24586106 24586106 C T DHX15 5'UTR 0.52 TCGA-AA-A022-01 4 25005398 25005398 C A LGI2 Missense_Mutation p.R438L 0.35 deleterious(0) possibly_damaging(0.843) TCGA-AA-A022-01 4 2749534 2749534 C T TNIP2 Missense_Mutation p.A139T 0.52 tolerated(1) benign(0.41) TCGA-AA-A022-01 4 2940408 2940408 T - NOP14 3'UTR 0.38 TCGA-AA-A022-01 4 3475289 3475289 C A DOK7 Missense_Mutation p.A86D 0.39 deleterious(0.02) possibly_damaging(0.57) TCGA-AA-A022-01 4 3495242 3495242 C T DOK7 3'UTR 0.39 TCGA-AA-A022-01 4 41270148 41270149 - C UCHL1 3'UTR 0.33 TCGA-AA-A022-01 4 41940649 41940649 G T TMEM33 Missense_Mutation p.A26S 0.28 tolerated(0.18) benign(0.285) TCGA-AA-A022-01 4 41984874 41984874 G A DCAF4L1 Silent p.P355P 0.37 TCGA-AA-A022-01 4 41985385 41985385 A G DCAF4L1 3'UTR 0.33 TCGA-AA-A022-01 4 44450100 44450100 C T KCTD8 Silent p.S147S 0.33 TCGA-AA-A022-01 4 44719257 44719257 A - GNPDA2 Frame_Shift_Del p.F94Lfs*6 0.21 TCGA-AA-A022-01 4 55964878 55964878 G A KDR Missense_Mutation p.R787W 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-AA-A022-01 4 57181218 57181218 G A KIAA1211 Missense_Mutation p.R517H 0.39 deleterious(0) possibly_damaging(0.715) TCGA-AA-A022-01 4 57265462 57265462 A - PPAT Frame_Shift_Del p.F373Lfs*16 0.09 TCGA-AA-A022-01 4 5961272 5961272 G A C4orf50 Missense_Mutation p.R695C 0.28 tolerated(0.21) benign(0.019) TCGA-AA-A022-01 4 6304343 6304343 C T WFS1 3'UTR 0.23 TCGA-AA-A022-01 4 6925431 6925431 C T TBC1D14 Silent p.C105C 0.25 TCGA-AA-A022-01 4 69964387 69964387 C A UGT2B7 Missense_Mutation p.P284H 0.23 deleterious(0.01) possibly_damaging(0.696) TCGA-AA-A022-01 4 70455069 70455069 A G UGT2A1 3'UTR 0.11 TCGA-AA-A022-01 4 70513073 70513073 T - UGT2A1 Frame_Shift_Del p.N97Ifs*18 0.23 TCGA-AA-A022-01 4 727506 727506 G A PCGF3 Missense_Mutation p.A13T 0.21 tolerated(0.1) benign(0.137) TCGA-AA-A022-01 4 728799 728799 C - PCGF3 Frame_Shift_Del p.L65Cfs*26 0.28 TCGA-AA-A022-01 4 74863311 74863311 C T CXCL5 3'UTR 0.29 TCGA-AA-A022-01 4 76650040 76650040 G A USO1 Missense_Mutation p.A13T 0.38 tolerated(0.25) benign(0.035) TCGA-AA-A022-01 4 7677887 7677887 C T SORCS2 Silent p.Y424Y 0.47 TCGA-AA-A022-01 4 76912022 76912022 G T SDAD1 5'UTR 0.39 TCGA-AA-A022-01 4 77661720 77661720 G A SHROOM3 Silent p.P798P 0.40 TCGA-AA-A022-01 4 79334176 79334176 C T FRAS1 Silent p.I1454I 0.36 TCGA-AA-A022-01 4 79368027 79368027 T C FRAS1 Silent p.P2001P 0.20 TCGA-AA-A022-01 4 81967644 81967644 A - BMP3 Frame_Shift_Del p.K358Rfs*20 0.27 TCGA-AA-A022-01 4 85748006 85748006 A - WDFY3 Frame_Shift_Del p.L362Yfs*17 0.21 TCGA-AA-A022-01 4 8588903 8588903 G A GPR78 Missense_Mutation p.R302H 0.39 deleterious(0) probably_damaging(0.973) TCGA-AA-A022-01 4 91844593 91844593 T C CCSER1 Missense_Mutation p.Y723H 0.06 tolerated(0.57) benign(0.011) TCGA-AA-A022-01 4 93225713 93225713 G A GRID2 5'UTR 0.34 TCGA-AA-A022-01 4 96140320 96140320 T C UNC5C Missense_Mutation p.Y482C 0.37 tolerated(0.15) benign(0.118) TCGA-AA-A022-01 4 9785349 9785349 G C DRD5 3'UTR 0.34 TCGA-AA-A022-01 4 99407948 99407948 T C TSPAN5 Missense_Mutation p.I74V 0.47 tolerated(0.45) benign(0.012) TCGA-AA-A022-01 4 99996087 99996087 T C ADH5 Silent p.T313T 0.34 TCGA-AA-A022-01 5 10239183 10239183 C T FAM173B Missense_Mutation p.R101H 0.37 deleterious(0.03) possibly_damaging(0.751) TCGA-AA-A022-01 5 102611724 102611724 G A C5orf30 Missense_Mutation p.R35H 0.33 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AA-A022-01 5 102886462 102886462 G A NUDT12 3'UTR 0.58 TCGA-AA-A022-01 5 1073845 1073845 G A SLC12A7 Missense_Mutation p.T715M 0.38 deleterious(0) probably_damaging(0.932) TCGA-AA-A022-01 5 112384666 112384666 C A MCC Intron 0.38 TCGA-AA-A022-01 5 112891792 112891792 T C YTHDC2 Missense_Mutation p.V726A 0.33 tolerated(0.41) benign(0.042) TCGA-AA-A022-01 5 115336129 115336129 G T AQPEP Splice_Site p.X506_splice 0.31 TCGA-AA-A022-01 5 115811251 115811251 C T SEMA6A Silent p.G566G 0.24 TCGA-AA-A022-01 5 121413662 121413662 C T LOX Missense_Mutation p.V7M 0.23 tolerated(0.08) benign(0.003) TCGA-AA-A022-01 5 122881406 122881406 C T CSNK1G3 Nonsense_Mutation p.R17* 0.40 TCGA-AA-A022-01 5 1232371 1232371 C T SLC6A18 Silent p.F66F 0.38 TCGA-AA-A022-01 5 1244882 1244882 C T SLC6A18 Silent p.Y552Y 0.36 TCGA-AA-A022-01 5 132009685 132009685 T C IL4 5'UTR 0.43 TCGA-AA-A022-01 5 132216670 132216670 G T AFF4 3'UTR 0.28 TCGA-AA-A022-01 5 133912469 133912469 A G JADE2 Intron 0.42 TCGA-AA-A022-01 5 133912578 133912578 G A JADE2 Intron 0.06 TCGA-AA-A022-01 5 134345111 134345111 G A CATSPER3 Missense_Mutation p.M289I 0.35 tolerated(0.45) benign(0) TCGA-AA-A022-01 5 136964097 136964097 C T KLHL3 Missense_Mutation p.A494T 0.22 deleterious(0.01) possibly_damaging(0.737) TCGA-AA-A022-01 5 137206565 137206565 G T MYOT Missense_Mutation p.Q75H 0.31 deleterious(0.03) benign(0.305) TCGA-AA-A022-01 5 137527973 137527973 C T CDC23 Missense_Mutation p.R424Q 0.35 tolerated(0.73) benign(0.019) TCGA-AA-A022-01 5 137534337 137534337 C T CDC23 Silent p.S263S 0.37 TCGA-AA-A022-01 5 137780186 137780186 C T REEP2 Missense_Mutation p.R89C 0.32 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 5 138724213 138724213 C T MZB1 Missense_Mutation p.R80Q 0.37 tolerated(0.76) benign(0.009) TCGA-AA-A022-01 5 138857920 138857920 G A TMEM173 Missense_Mutation p.H232Y 0.32 deleterious(0) benign(0.074) TCGA-AA-A022-01 5 140186808 140186808 G A PCDHA4 Silent p.R12R 0.34 TCGA-AA-A022-01 5 140201828 140201828 G A PCDHA5 Silent p.A156A 0.41 TCGA-AA-A022-01 5 140228174 140228174 C A PCDHA9 Missense_Mutation p.H32N 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.773) TCGA-AA-A022-01 5 140263781 140263781 C T PCDHA13 Missense_Mutation p.P643L 0.46 tolerated_low_confidence(0.07) benign(0.017) TCGA-AA-A022-01 5 140433078 140433078 C A PCDHB1 Missense_Mutation p.Q675K 0.26 deleterious(0.02) benign(0.006) TCGA-AA-A022-01 5 140594495 140594495 C T PCDHB13 Missense_Mutation p.A267V 0.34 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AA-A022-01 5 140604667 140604667 C T PCDHB14 Silent p.R530R 0.23 TCGA-AA-A022-01 5 140712483 140712483 C T PCDHGA1 Silent p.D744D 0.34 TCGA-AA-A022-01 5 140719021 140719021 C T PCDHGA2 Silent p.D161D 0.40 TCGA-AA-A022-01 5 140734801 140734801 C T PCDHGA4 Missense_Mutation p.R12W 0.34 deleterious_low_confidence(0.05) benign(0.006) TCGA-AA-A022-01 5 140744155 140744155 C T PCDHGA5 Silent p.T86T 0.35 TCGA-AA-A022-01 5 140794893 140794893 G A PCDHGA10 Silent p.A717A 0.38 TCGA-AA-A022-01 5 140802233 140802233 C T PCDHGA11 Missense_Mutation p.P480L 0.08 tolerated_low_confidence(0.08) benign(0.1) TCGA-AA-A022-01 5 14487781 14487781 C - TRIO Frame_Shift_Del p.V2351Cfs*62 0.23 TCGA-AA-A022-01 5 145665677 145665677 A - RBM27 3'UTR 0.50 TCGA-AA-A022-01 5 145719440 145719440 C T POU4F3 Silent p.G150G 0.28 TCGA-AA-A022-01 5 146777237 146777237 G A DPYSL3 Missense_Mutation p.R599W 0.07 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 5 148406320 148406320 A T SH3TC2 Intron 0.34 TCGA-AA-A022-01 5 148886677 148886677 G A CSNK1A1 Missense_Mutation p.A285V 0.39 tolerated_low_confidence(0.13) benign(0.066) TCGA-AA-A022-01 5 149583576 149583576 T C SLC6A7 Missense_Mutation p.L436P 0.44 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 5 150436467 150436467 G A TNIP1 Missense_Mutation p.R163C 0.44 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 5 150663634 150663634 G T SLC36A3 Silent p.A356A 0.37 TCGA-AA-A022-01 5 150933923 150933923 C T FAT2 Silent p.T1315T 0.32 TCGA-AA-A022-01 5 152870386 152870386 G - GRIA1 5'Flank 0.29 TCGA-AA-A022-01 5 152873559 152873559 C - GRIA1 Frame_Shift_Del p.P63Rfs*10 0.27 TCGA-AA-A022-01 5 153674442 153674442 G A GALNT10 Missense_Mutation p.D76N 0.25 tolerated(0.24) benign(0.002) TCGA-AA-A022-01 5 158588366 158588366 G A RNF145 Missense_Mutation p.R542C 0.36 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 5 158590070 158590070 A G RNF145 Missense_Mutation p.F410S 0.34 deleterious(0) probably_damaging(0.954) TCGA-AA-A022-01 5 158601112 158601112 C T RNF145 Missense_Mutation p.V256I 0.30 tolerated(0.32) possibly_damaging(0.593) TCGA-AA-A022-01 5 158710265 158710265 G T UBLCP1 Nonsense_Mutation p.E283* 0.31 TCGA-AA-A022-01 5 159781983 159781983 G T C1QTNF2 Silent p.P57P 0.39 TCGA-AA-A022-01 5 161495076 161495076 C T GABRG2 Missense_Mutation p.T24M 0.34 tolerated_low_confidence(0.26) benign(0.01) TCGA-AA-A022-01 5 161938 161938 C T PLEKHG4B Missense_Mutation p.P487L 0.32 tolerated(0.5) benign(0.093) TCGA-AA-A022-01 5 161984 161984 C T PLEKHG4B Silent p.S502S 0.32 TCGA-AA-A022-01 5 163580 163580 C - PLEKHG4B Frame_Shift_Del p.P777Rfs*30 0.16 TCGA-AA-A022-01 5 166711942 166711942 G A TENM2 Missense_Mutation p.V34M 0.36 deleterious_low_confidence(0.01) benign(0.097) TCGA-AA-A022-01 5 16675056 16675056 C T MYO10 Missense_Mutation p.G1624S 0.37 tolerated(0.15) probably_damaging(1) TCGA-AA-A022-01 5 167855047 167855047 C T WWC1 Missense_Mutation p.T607M 0.40 tolerated(0.13) benign(0.006) TCGA-AA-A022-01 5 169469027 169469027 A C DOCK2 Missense_Mutation p.E1256A 0.35 deleterious(0.04) benign(0.149) TCGA-AA-A022-01 5 174156219 174156219 G A MSX2 Missense_Mutation p.R146H 0.26 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 5 176008367 176008367 C T CDHR2 Silent p.G614G 0.47 TCGA-AA-A022-01 5 176056502 176056502 C T SNCB Intron 0.36 TCGA-AA-A022-01 5 176308393 176308393 G A HK3 Missense_Mutation p.A846V 0.35 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 5 176734572 176734572 G A MXD3 3'UTR 0.26 TCGA-AA-A022-01 5 176833048 176833048 C T F12 Missense_Mutation p.G44R 0.41 deleterious(0.02) probably_damaging(1) TCGA-AA-A022-01 5 177059507 177059507 G A RP11-1277A3.2 Intron 0.37 TCGA-AA-A022-01 5 177548744 177548744 C T N4BP3 Silent p.S459S 0.23 TCGA-AA-A022-01 5 177571044 177571044 C T RMND5B Missense_Mutation p.A210V 0.41 tolerated(0.3) benign(0.006) TCGA-AA-A022-01 5 178410024 178410024 C T GRM6 Missense_Mutation p.V775M 0.32 deleterious(0.04) possibly_damaging(0.832) TCGA-AA-A022-01 5 180219975 180219975 G T MGAT1 5'UTR 0.07 TCGA-AA-A022-01 5 24487770 24487770 C T CDH10 3'UTR 0.33 TCGA-AA-A022-01 5 34823169 34823169 G T RAI14 Missense_Mutation p.D411Y 0.32 deleterious(0.01) possibly_damaging(0.69) TCGA-AA-A022-01 5 34824014 34824014 C T RAI14 Silent p.N692N 0.11 TCGA-AA-A022-01 5 38370555 38370555 C A EGFLAM Silent p.R235R 0.33 TCGA-AA-A022-01 5 38923329 38923329 A - OSMR Frame_Shift_Del p.T617Qfs*20 0.32 TCGA-AA-A022-01 5 41049516 41049516 G T MROH2B Missense_Mutation p.T456N 0.42 tolerated(0.29) benign(0.026) TCGA-AA-A022-01 5 43543182 43543182 G T PAIP1 Missense_Mutation p.R220S 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-AA-A022-01 5 45262221 45262221 C T HCN1 Silent p.T825T 0.33 TCGA-AA-A022-01 5 45262693 45262693 T C HCN1 Missense_Mutation p.Y668C 0.34 tolerated_low_confidence(0.17) probably_damaging(0.99) TCGA-AA-A022-01 5 45396653 45396653 C A HCN1 Missense_Mutation p.G391C 0.26 deleterious(0) probably_damaging(0.991) TCGA-AA-A022-01 5 50685508 50685508 C T ISL1 Silent p.A169A 0.32 TCGA-AA-A022-01 5 56160643 56160643 G A MAP3K1 Missense_Mutation p.R306H 0.28 deleterious(0) probably_damaging(0.979) TCGA-AA-A022-01 5 56234723 56234723 A G MIER3 Missense_Mutation p.M101T 0.31 deleterious(0.02) possibly_damaging(0.514) TCGA-AA-A022-01 5 56527098 56527098 G A GPBP1 Missense_Mutation p.G128R 0.37 tolerated(0.9) benign(0.035) TCGA-AA-A022-01 5 57913527 57913527 G A RAB3C Missense_Mutation p.D28N 0.36 deleterious(0.01) benign(0.282) TCGA-AA-A022-01 5 60840166 60840166 G - ZSWIM6 3'UTR 0.31 TCGA-AA-A022-01 5 71739971 71739971 C T ZNF366 Missense_Mutation p.C616Y 0.32 deleterious_low_confidence(0) benign(0.003) TCGA-AA-A022-01 5 72196846 72196846 A G TNPO1 Silent p.S820S 0.22 TCGA-AA-A022-01 5 72370577 72370577 C T FCHO2 Missense_Mutation p.R530W 0.35 deleterious(0) probably_damaging(0.912) TCGA-AA-A022-01 5 74655887 74655887 C T HMGCR Silent p.T845T 0.09 TCGA-AA-A022-01 5 76264840 76264840 G A CRHBP 3'UTR 0.23 TCGA-AA-A022-01 5 76989061 76989061 T A TBCA Intron 0.37 TCGA-AA-A022-01 5 7784558 7784558 G T ADCY2 Missense_Mutation p.R822I 0.26 deleterious(0.01) possibly_damaging(0.565) TCGA-AA-A022-01 5 78533327 78533328 TG - JMY Frame_Shift_Del p.C286Lfs*29 0.21 TCGA-AA-A022-01 5 79034791 79034791 C T CMYA5 Silent p.I3401I 0.35 TCGA-AA-A022-01 5 80631702 80631702 C A ACOT12 Nonsense_Mutation p.E383* 0.33 TCGA-AA-A022-01 5 82808252 82808252 A - VCAN Intron 0.18 TCGA-AA-A022-01 5 89975448 89975448 T C GPR98 Splice_Site p.X1842_splice 0.39 TCGA-AA-A022-01 5 90459618 90459618 T C GPR98 Silent p.S6274S 0.29 TCGA-AA-A022-01 5 9190440 9190440 G A SEMA5A Silent p.H404H 0.42 TCGA-AA-A022-01 5 96090399 96090399 A - CAST Frame_Shift_Del p.E516Kfs*10 0.27 TCGA-AA-A022-01 5 98206408 98206409 - T CHD1 Frame_Shift_Ins p.E1321Rfs*17 0.43 TCGA-AA-A022-01 6 100957310 100957310 C A ASCC3 Missense_Mutation p.Q2187H 0.42 deleterious_low_confidence(0) benign(0.012) TCGA-AA-A022-01 6 10415202 10415202 G A TFAP2A Missense_Mutation p.T6M 0.38 deleterious(0) benign(0.444) TCGA-AA-A022-01 6 107390069 107390069 G A BEND3 Missense_Mutation p.R776W 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 6 107390888 107390888 T C BEND3 Missense_Mutation p.S503G 0.34 tolerated(0.13) probably_damaging(0.986) TCGA-AA-A022-01 6 109220943 109220943 C T ARMC2 Silent p.D265D 0.42 TCGA-AA-A022-01 6 109771544 109771544 C T MICAL1 Missense_Mutation p.A384T 0.33 tolerated(0.21) benign(0.005) TCGA-AA-A022-01 6 117681532 117681532 C T ROS1 Missense_Mutation p.A1140T 0.42 tolerated(0.12) benign(0.002) TCGA-AA-A022-01 6 123318719 123318720 - C CLVS2 5'UTR 0.24 TCGA-AA-A022-01 6 129573388 129573389 AA - LAMA2 Frame_Shift_Del p.K682Efs*22 0.25 TCGA-AA-A022-01 6 135318749 135318749 T - HBS1L Frame_Shift_Del p.G196Dfs*40 0.21 TCGA-AA-A022-01 6 136687037 136687037 C T MAP7 Missense_Mutation p.R392H 0.05 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 6 138655984 138655984 C T KIAA1244 Missense_Mutation p.R2001W 0.31 deleterious(0) possibly_damaging(0.591) TCGA-AA-A022-01 6 139266635 139266635 T C REPS1 Intron 0.22 TCGA-AA-A022-01 6 139488147 139488147 G - HECA Frame_Shift_Del p.G335Dfs*27 0.27 TCGA-AA-A022-01 6 139694105 139694105 T - CITED2 3'UTR 0.56 TCGA-AA-A022-01 6 142703103 142703103 C T GPR126 Missense_Mutation p.P362L 0.43 tolerated(0.1) benign(0.09) TCGA-AA-A022-01 6 144207179 144207179 G A ZC2HC1B Missense_Mutation p.G34E 0.40 tolerated(0.53) benign(0.014) TCGA-AA-A022-01 6 144262631 144262631 G T PLAGL1 Missense_Mutation p.P441H 0.44 tolerated(0.51) benign(0.005) TCGA-AA-A022-01 6 146673439 146673439 A G GRM1 Missense_Mutation p.I414V 0.39 tolerated(0.13) possibly_damaging(0.773) TCGA-AA-A022-01 6 147109544 147109544 C T ADGB Silent p.G1445G 0.38 TCGA-AA-A022-01 6 151673069 151673069 C T AKAP12 Silent p.D1181D 0.34 TCGA-AA-A022-01 6 152420067 152420067 C T ESR1 Missense_Mutation p.T585M 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.69) TCGA-AA-A022-01 6 154412518 154412518 A G OPRM1 Missense_Mutation p.N452D 0.39 tolerated(0.58) benign(0.014) TCGA-AA-A022-01 6 15524787 15524789 CTC - DTNBP1 In_Frame_Del p.G260del 0.33 TCGA-AA-A022-01 6 155561691 155561693 AGG - TIAM2 In_Frame_Del p.R1066del 0.33 TCGA-AA-A022-01 6 158490643 158490643 G A SYNJ2 Silent p.S626S 0.33 TCGA-AA-A022-01 6 159190904 159190904 C T EZR Missense_Mutation p.R388H 0.31 tolerated(0.15) benign(0.117) TCGA-AA-A022-01 6 161519386 161519386 G A MAP3K4 Missense_Mutation p.A1201T 0.38 tolerated(0.71) benign(0.001) TCGA-AA-A022-01 6 16306873 16306874 TT - ATXN1 Frame_Shift_Del p.K712Gfs*28 0.42 TCGA-AA-A022-01 6 165713945 165713945 G - C6orf118 Frame_Shift_Del p.Q262Sfs*21 0.23 TCGA-AA-A022-01 6 167417716 167417716 T - FGFR1OP Intron 0.27 TCGA-AA-A022-01 6 167753705 167753705 G - TTLL2 Frame_Shift_Del p.W108Gfs*25 0.23 TCGA-AA-A022-01 6 168352153 168352153 G A MLLT4 Silent p.P1366P 0.29 TCGA-AA-A022-01 6 168476510 168476510 C T FRMD1 Intron 0.26 TCGA-AA-A022-01 6 170059580 170059580 C T WDR27 Silent p.S388S 0.52 TCGA-AA-A022-01 6 170151582 170151582 G A TCTE3 5'UTR 0.38 TCGA-AA-A022-01 6 170592611 170592611 C - DLL1 Frame_Shift_Del p.E586Rfs*5 0.23 TCGA-AA-A022-01 6 18258250 18258250 A - DEK Frame_Shift_Del p.L98* 0.18 TCGA-AA-A022-01 6 21597934 21597935 - A SOX4 3'UTR 0.37 TCGA-AA-A022-01 6 24601407 24601407 T - KIAA0319 5'UTR 0.41 TCGA-AA-A022-01 6 25862634 25862634 C T SLC17A3 Missense_Mutation p.V44I 0.71 tolerated(1) benign(0.006) TCGA-AA-A022-01 6 29556041 29556041 C T OR2H2 Missense_Mutation p.T107I 0.37 deleterious(0.02) benign(0.023) TCGA-AA-A022-01 6 30529872 30529872 C T PRR3 Missense_Mutation p.P144L 0.73 deleterious_low_confidence(0.04) benign(0.061) TCGA-AA-A022-01 6 30614507 30614510 CATT - ATAT1 3'UTR 0.33 TCGA-AA-A022-01 6 31431933 31431933 G A HCP5 RNA 0.32 TCGA-AA-A022-01 6 31602932 31602933 - C PRRC2A Frame_Shift_Ins p.G1731Wfs*35 0.35 TCGA-AA-A022-01 6 31639665 31639665 G A CSNK2B-LY6G5B-1181 3'UTR 0.66 TCGA-AA-A022-01 6 31726899 31726899 G A MSH5 Missense_Mutation p.R451H 0.73 deleterious(0.01) probably_damaging(0.954) TCGA-AA-A022-01 6 32010262 32010262 G A TNXB Silent p.C489C 0.73 TCGA-AA-A022-01 6 32049307 32049307 G T RNA5SP206 5'Flank 0.08 TCGA-AA-A022-01 6 32096845 32096845 C T FKBPL Missense_Mutation p.R238Q 0.69 deleterious(0.04) probably_damaging(0.919) TCGA-AA-A022-01 6 32796600 32796600 C T TAP2 Intron 0.60 TCGA-AA-A022-01 6 33406053 33406053 T C SYNGAP1 Silent p.S457S 0.05 TCGA-AA-A022-01 6 33990441 33990441 C T GRM4 3'UTR 0.23 TCGA-AA-A022-01 6 36274105 36274105 C A PNPLA1 Missense_Mutation p.A474D 0.34 deleterious_low_confidence(0.04) benign(0.303) TCGA-AA-A022-01 6 38644985 38644985 T C GLO1 3'UTR 0.15 TCGA-AA-A022-01 6 40360308 40360308 C T LRFN2 Missense_Mutation p.A582T 0.45 tolerated(0.25) benign(0.06) TCGA-AA-A022-01 6 42824931 42824931 C T GLTSCR1L Silent p.H737H 0.30 TCGA-AA-A022-01 6 43193501 43193501 C T DNPH1 Silent p.Q165Q 0.25 TCGA-AA-A022-01 6 43267761 43267761 C T SLC22A7 Silent p.L262L 0.37 TCGA-AA-A022-01 6 43268949 43268949 G A SLC22A7 Missense_Mutation p.A302T 0.45 deleterious(0) possibly_damaging(0.692) TCGA-AA-A022-01 6 43269358 43269358 G A SLC22A7 Missense_Mutation p.R330Q 0.39 tolerated(0.38) benign(0.023) TCGA-AA-A022-01 6 43418566 43418566 C T DLK2 Missense_Mutation p.R288Q 0.38 deleterious(0.01) benign(0.251) TCGA-AA-A022-01 6 44250139 44250139 C T TCTE1 Missense_Mutation p.R335H 0.37 tolerated(0.21) benign(0.036) TCGA-AA-A022-01 6 44253791 44253791 G A TCTE1 Silent p.C252C 0.49 TCGA-AA-A022-01 6 44272508 44272508 G A AARS2 Silent p.D542D 0.43 TCGA-AA-A022-01 6 49989681 49989681 G T DEFB110 5'UTR 0.34 TCGA-AA-A022-01 6 51695753 51695753 C T PKHD1 Nonsense_Mutation p.W2736* 0.07 TCGA-AA-A022-01 6 51947261 51947261 G T PKHD1 Silent p.P70P 0.30 TCGA-AA-A022-01 6 52268497 52268500 TTTC - PAQR8 Frame_Shift_Del p.F163Sfs*45 0.29 TCGA-AA-A022-01 6 52876886 52876886 C T ICK Missense_Mutation p.S431N 0.35 deleterious(0.01) benign(0.128) TCGA-AA-A022-01 6 52957244 52957244 G A FBXO9 Missense_Mutation p.R234H 0.36 tolerated(0.16) benign(0.127) TCGA-AA-A022-01 6 53141002 53141002 C T ELOVL5 Missense_Mutation p.R127H 0.34 tolerated(1) benign(0.002) TCGA-AA-A022-01 6 54254646 54254646 C T TINAG Nonsense_Mutation p.R452* 0.34 TCGA-AA-A022-01 6 56472747 56472747 C T DST Intron 0.25 TCGA-AA-A022-01 6 56484816 56484816 G A DST Intron 0.41 TCGA-AA-A022-01 6 64394047 64394047 C T PHF3 Nonsense_Mutation p.R142* 0.37 TCGA-AA-A022-01 6 65300498 65300498 C T EYS Silent p.P1754P 0.37 TCGA-AA-A022-01 6 69666661 69666661 G A BAI3 Silent p.T495T 0.26 TCGA-AA-A022-01 6 72596775 72596775 C - RIMS1 Frame_Shift_Del p.M19Cfs*7 0.27 TCGA-AA-A022-01 6 72806727 72806727 C T RIMS1 Silent p.G107G 0.36 TCGA-AA-A022-01 6 72892321 72892321 C T RIMS1 Missense_Mutation p.R383C 0.48 deleterious(0) possibly_damaging(0.614) TCGA-AA-A022-01 6 74104868 74104868 C T DDX43 Silent p.G80G 0.36 TCGA-AA-A022-01 6 76751630 76751630 T C IMPG1 Missense_Mutation p.Q94R 0.28 tolerated(0.13) probably_damaging(0.955) TCGA-AA-A022-01 6 79577410 79577410 C - IRAK1BP1 Frame_Shift_Del p.L41Sfs*15 0.22 TCGA-AA-A022-01 6 82941534 82941534 G A IBTK Silent p.G148G 0.20 TCGA-AA-A022-01 6 83842028 83842028 A G DOPEY1 Missense_Mutation p.Q917R 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-AA-A022-01 6 83847871 83847871 C T DOPEY1 Silent p.L1370L 0.37 TCGA-AA-A022-01 6 85472340 85472340 C T TBX18 Missense_Mutation p.R140Q 0.39 tolerated(1) probably_damaging(0.988) TCGA-AA-A022-01 6 87966380 87966380 C T ZNF292 Silent p.L1011L 0.24 TCGA-AA-A022-01 6 87969426 87969426 G A ZNF292 Missense_Mutation p.A2027T 0.42 tolerated(0.61) benign(0.001) TCGA-AA-A022-01 6 89322303 89322304 - T RNGTT 3'UTR 0.47 TCGA-AA-A022-01 6 89323996 89323996 G A RNGTT Missense_Mutation p.A542V 0.32 deleterious(0) probably_damaging(0.96) TCGA-AA-A022-01 6 89790572 89790574 CTC - PNRC1 5'UTR 0.44 TCGA-AA-A022-01 6 90396700 90396700 G A MDN1 Silent p.T3831T 0.41 TCGA-AA-A022-01 6 90424274 90424274 T C MDN1 Missense_Mutation p.S2353G 0.09 benign(0.008) TCGA-AA-A022-01 6 90482360 90482360 G T MDN1 Missense_Mutation p.P672H 0.34 probably_damaging(1) TCGA-AA-A022-01 6 90484370 90484370 C T MDN1 Missense_Mutation p.R635Q 0.34 possibly_damaging(0.904) TCGA-AA-A022-01 6 90572378 90572378 G A CASP8AP2 RNA 0.35 TCGA-AA-A022-01 6 90661005 90661006 - C BACH2 Frame_Shift_Ins p.Q274Afs*3 0.27 TCGA-AA-A022-01 6 96654334 96654334 T - FUT9 3'UTR 0.24 TCGA-AA-A022-01 6 97339122 97339122 A G NDUFAF4 Missense_Mutation p.F129S 0.34 tolerated(0.52) benign(0) TCGA-AA-A022-01 6 97345678 97345680 CTC - NDUFAF4 5'UTR 0.24 TCGA-AA-A022-01 6 99284903 99284903 A G POU3F2 3'UTR 0.41 TCGA-AA-A022-01 6 99353377 99353377 C T FBXL4 Missense_Mutation p.R343H 0.37 deleterious(0) probably_damaging(0.939) TCGA-AA-A022-01 7 100180080 100180080 G A LRCH4 Silent p.L75L 0.18 TCGA-AA-A022-01 7 100485895 100485895 G A SRRT Missense_Mutation p.A816T 0.40 tolerated(0.39) benign(0.002) TCGA-AA-A022-01 7 100843787 100843790 AAGA - MOGAT3 Frame_Shift_Del p.F39Sfs*41 0.30 TCGA-AA-A022-01 7 102574641 102574641 G A LRRC17 Missense_Mutation p.R94H 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-AA-A022-01 7 107114482 107114482 A - GPR22 Intron 0.22 TCGA-AA-A022-01 7 108524055 108524056 - T C7orf66 3'UTR 0.10 TCGA-AA-A022-01 7 11022193 11022195 GAA - PHF14 In_Frame_Del p.E106del 0.21 TCGA-AA-A022-01 7 110765260 110765260 T - LRRN3 3'UTR 0.34 TCGA-AA-A022-01 7 112124909 112124909 T A LSMEM1 Missense_Mutation p.I13N 0.36 deleterious(0.02) benign(0.231) TCGA-AA-A022-01 7 112424046 112424047 - A TMEM168 Frame_Shift_Ins p.I279Yfs*8 0.25 TCGA-AA-A022-01 7 1132552 1132552 G A GPER1 3'UTR 0.31 TCGA-AA-A022-01 7 117417770 117417770 C T CTTNBP2 Missense_Mutation p.S858N 0.53 tolerated(0.1) benign(0.021) TCGA-AA-A022-01 7 119915105 119915105 G A KCND2 Missense_Mutation p.R140H 0.30 tolerated(0.09) probably_damaging(0.982) TCGA-AA-A022-01 7 120971879 120971879 G - WNT16 Frame_Shift_Del p.G167Afs*17 0.25 TCGA-AA-A022-01 7 122768983 122768983 G A SLC13A1 Missense_Mutation p.T350I 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-AA-A022-01 7 127991468 127991468 G A PRRT4 Silent p.S714S 0.30 TCGA-AA-A022-01 7 128587456 128587457 - C IRF5 Frame_Shift_Ins p.G221Wfs*12 0.28 TCGA-AA-A022-01 7 130353848 130353848 C A TSGA13 3'UTR 0.48 TCGA-AA-A022-01 7 131982958 131982958 G A PLXNA4 Silent p.G465G 0.35 TCGA-AA-A022-01 7 136700946 136700946 C G CHRM2 Missense_Mutation p.A445G 0.39 deleterious(0.01) benign(0.423) TCGA-AA-A022-01 7 138279285 138279285 A - SVOPL 3'Flank 0.29 TCGA-AA-A022-01 7 138344621 138344621 C T SVOPL Missense_Mutation p.G153D 0.34 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 7 138536987 138536987 G - KIAA1549 Frame_Shift_Del p.P1759Rfs*66 0.31 TCGA-AA-A022-01 7 138602338 138602338 C T KIAA1549 Silent p.L678L 0.26 TCGA-AA-A022-01 7 138732162 138732162 G T ZC3HAV1 3'UTR 0.56 TCGA-AA-A022-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-AA-A022-01 7 141352586 141352586 G T AGK Splice_Site p.X378_splice 0.34 TCGA-AA-A022-01 7 141464298 141464298 T C TAS2R3 Missense_Mutation p.F114L 0.37 deleterious(0) probably_damaging(0.994) TCGA-AA-A022-01 7 141478295 141478295 C T TAS2R4 Missense_Mutation p.R3W 0.07 tolerated(0.08) benign(0) TCGA-AA-A022-01 7 141952087 141952088 - T PRSS58 Frame_Shift_Ins p.I227Nfs*9 0.10 TCGA-AA-A022-01 7 142561984 142561984 C A EPHB6 Missense_Mutation p.D142E 0.29 tolerated(0.22) benign(0.001) TCGA-AA-A022-01 7 142562397 142562398 - C EPHB6 Frame_Shift_Ins p.R283Qfs*41 0.36 TCGA-AA-A022-01 7 142564281 142564281 A G EPHB6 Missense_Mutation p.N502S 0.30 tolerated(0.53) benign(0.012) TCGA-AA-A022-01 7 143048992 143048992 C T CLCN1 Silent p.A967A 0.33 TCGA-AA-A022-01 7 147815226 147815226 C T CNTNAP2 Silent p.A800A 0.26 TCGA-AA-A022-01 7 148950682 148950682 T C ZNF212 Missense_Mutation p.Y222H 0.33 tolerated(0.5) benign(0.006) TCGA-AA-A022-01 7 149499217 149499217 C T SSPO RNA 0.44 TCGA-AA-A022-01 7 149504000 149504000 C T SSPO RNA 0.27 TCGA-AA-A022-01 7 150269440 150269440 G A GIMAP4 Silent p.V94V 0.36 TCGA-AA-A022-01 7 150725510 150725510 G T ABCB8 5'UTR 0.29 TCGA-AA-A022-01 7 150768867 150768867 C A SLC4A2 Silent p.P761P 0.44 TCGA-AA-A022-01 7 150935244 150935244 C A CHPF2 Missense_Mutation p.P599H 0.52 deleterious(0) benign(0.396) TCGA-AA-A022-01 7 151845524 151845524 A - KMT2C Frame_Shift_Del p.F4496Lfs*21 0.10 TCGA-AA-A022-01 7 155504066 155504066 C - RBM33 Frame_Shift_Del p.P374Rfs*4 0.20 TCGA-AA-A022-01 7 157985072 157985072 C T PTPRN2 Missense_Mutation p.A166T 0.40 tolerated(0.33) benign(0.01) TCGA-AA-A022-01 7 16832522 16832522 T - AGR2 3'UTR 0.53 TCGA-AA-A022-01 7 193427 193427 C T FAM20C Silent p.A76A 0.46 TCGA-AA-A022-01 7 20199355 20199355 G A MACC1 Missense_Mutation p.A210V 0.31 tolerated(1) possibly_damaging(0.558) TCGA-AA-A022-01 7 20782556 20782556 C T ABCB5 Silent p.R1027R 0.24 TCGA-AA-A022-01 7 20795130 20795130 C T ABCB5 Silent p.N1219N 0.40 TCGA-AA-A022-01 7 22767172 22767172 C T IL6 Silent p.H43H 0.23 TCGA-AA-A022-01 7 23509610 23509610 C T IGF2BP3 Silent p.A40A 0.42 TCGA-AA-A022-01 7 23545864 23545864 T G TRA2A Silent p.G221G 0.34 TCGA-AA-A022-01 7 24903159 24903159 C T OSBPL3 Missense_Mutation p.V245I 0.29 tolerated(0.48) benign(0.003) TCGA-AA-A022-01 7 27211556 27211556 G T HOXA10 Silent p.R399R 0.08 TCGA-AA-A022-01 7 28997782 28997782 G A AC005013.5 Intron 0.62 TCGA-AA-A022-01 7 30486604 30486604 C T NOD1 Missense_Mutation p.C783Y 0.31 tolerated(0.09) probably_damaging(1) TCGA-AA-A022-01 7 30494853 30494853 T G NOD1 Missense_Mutation p.Q92H 0.29 deleterious(0.01) probably_damaging(0.912) TCGA-AA-A022-01 7 30656825 30656825 G A GARS Silent p.R430R 0.26 TCGA-AA-A022-01 7 30876298 30876298 G A FAM188B Missense_Mutation p.R386K 0.31 tolerated(0.41) benign(0.002) TCGA-AA-A022-01 7 32528860 32528860 C T LSM5 Splice_Site p.X48_splice 0.31 TCGA-AA-A022-01 7 33136124 33136124 G A RP9 Nonsense_Mutation p.R150* 0.36 TCGA-AA-A022-01 7 36438942 36438942 A - ANLN Frame_Shift_Del p.T144Hfs*18 0.24 TCGA-AA-A022-01 7 36561669 36561669 G A AOAH Silent p.P525P 0.42 TCGA-AA-A022-01 7 37990025 37990025 C T EPDR1 3'UTR 0.30 TCGA-AA-A022-01 7 42088155 42088155 C T GLI3 Missense_Mutation p.R205H 0.34 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 7 43547679 43547679 G A HECW1 Missense_Mutation p.R1272Q 0.36 deleterious(0.01) possibly_damaging(0.892) TCGA-AA-A022-01 7 44796659 44796659 G A ZMIZ2 Silent p.A93A 0.38 TCGA-AA-A022-01 7 45222854 45222854 A G RAMP3 Missense_Mutation p.H97R 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 7 48312955 48312955 T C ABCA13 Missense_Mutation p.L1231P 0.33 probably_damaging(0.959) TCGA-AA-A022-01 7 48314550 48314550 A - ABCA13 Frame_Shift_Del p.N1764Tfs*18 0.23 TCGA-AA-A022-01 7 51203914 51203914 G A COBL Missense_Mutation p.R300C 0.37 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 7 53104528 53104528 C G POM121L12 3'UTR 0.26 TCGA-AA-A022-01 7 5410187 5410187 C T TNRC18 Silent p.A1346A 0.30 TCGA-AA-A022-01 7 54820004 54820004 A C SEC61G 3'UTR 0.37 TCGA-AA-A022-01 7 5645021 5645021 C T FSCN1 Silent p.G466G 0.39 TCGA-AA-A022-01 7 64438973 64438973 T - ZNF117 Frame_Shift_Del p.I326Ffs*28 0.29 TCGA-AA-A022-01 7 69364442 69364442 G A AUTS2 Silent p.Q160Q 0.35 TCGA-AA-A022-01 7 70885934 70885934 C T WBSCR17 Missense_Mutation p.R269C 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-AA-A022-01 7 72849237 72849237 G A FZD9 Silent p.A300A 0.41 TCGA-AA-A022-01 7 72849359 72849359 C T FZD9 Missense_Mutation p.A341V 0.32 deleterious(0) probably_damaging(0.996) TCGA-AA-A022-01 7 72850251 72850251 A G FZD9 3'UTR 0.28 TCGA-AA-A022-01 7 74563868 74563869 - A GTF2IRD2B Frame_Shift_Ins p.I541Nfs*13 0.31 TCGA-AA-A022-01 7 75167401 75167401 G T HIP1 3'UTR 0.35 TCGA-AA-A022-01 7 75617579 75617579 T C POR 3'Flank 0.40 TCGA-AA-A022-01 7 75933373 75933373 C A HSPB1 Silent p.A167A 0.34 TCGA-AA-A022-01 7 77265143 77265143 C T PTPN12 Nonsense_Mutation p.R707* 0.34 TCGA-AA-A022-01 7 83034823 83034823 A - SEMA3E Frame_Shift_Del p.L314Cfs*11 0.27 TCGA-AA-A022-01 7 83610681 83610681 A G SEMA3A Silent p.A536A 0.39 TCGA-AA-A022-01 7 87047908 87047908 T - ABCB4 Frame_Shift_Del p.N808Tfs*27 0.28 TCGA-AA-A022-01 7 925724 925724 C T GET4 Missense_Mutation p.R63W 0.38 deleterious(0.04) possibly_damaging(0.882) TCGA-AA-A022-01 7 96639245 96639245 C T DLX6 Silent p.D256D 0.24 TCGA-AA-A022-01 7 98530921 98530921 G A TRRAP Missense_Mutation p.A1304T 0.16 benign(0.115) TCGA-AA-A022-01 7 98985724 98985724 G A ARPC1B Missense_Mutation p.V78M 0.41 deleterious(0.03) benign(0.248) TCGA-AA-A022-01 7 99027400 99027400 G A ATP5J2-PTCD1 Silent p.D257D 0.39 TCGA-AA-A022-01 7 99751503 99751504 AC - LAMTOR4 Frame_Shift_Del p.L75Afs*23 0.28 TCGA-AA-A022-01 7 99797919 99797919 C A STAG3 Missense_Mutation p.L580I 0.28 deleterious(0) possibly_damaging(0.891) TCGA-AA-A022-01 8 100832166 100832166 A G VPS13B Missense_Mutation p.Q2962R 0.29 deleterious(0.01) benign(0.069) TCGA-AA-A022-01 8 101936216 101936216 C T YWHAZ Silent p.T215T 0.37 TCGA-AA-A022-01 8 102585914 102585914 C A GRHL2 Silent p.T251T 0.31 TCGA-AA-A022-01 8 102731865 102731865 G A NCALD 5'UTR 0.17 TCGA-AA-A022-01 8 103220379 103220379 G A RRM2B Silent p.T346T 0.05 TCGA-AA-A022-01 8 103663384 103663384 C T KLF10 Silent p.T392T 0.32 TCGA-AA-A022-01 8 105010443 105010446 CAGT - RIMS2 Intron 0.24 TCGA-AA-A022-01 8 113933906 113933906 C T CSMD3 Missense_Mutation p.R528Q 0.35 deleterious(0.05) probably_damaging(0.986) TCGA-AA-A022-01 8 113988188 113988188 T A CSMD3 Missense_Mutation p.D407V 0.30 tolerated_low_confidence(0.31) benign(0) TCGA-AA-A022-01 8 116430587 116430587 C T TRPS1 Missense_Mutation p.A932T 0.36 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 8 11705328 11705328 C T CTSB Missense_Mutation p.C179Y 0.33 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 8 118159312 118159312 C T SLC30A8 Missense_Mutation p.A64V 0.35 tolerated(0.3) benign(0.002) TCGA-AA-A022-01 8 123965152 123965152 G A ZHX2 Missense_Mutation p.E468K 0.21 deleterious(0.01) probably_damaging(0.945) TCGA-AA-A022-01 8 124359474 124359474 G A ATAD2 Silent p.S690S 0.37 TCGA-AA-A022-01 8 124664151 124664151 C - KLHL38 Frame_Shift_Del p.G339Afs*20 0.45 TCGA-AA-A022-01 8 12958130 12958130 C T DLC1 Silent p.P572P 0.35 TCGA-AA-A022-01 8 133067268 133067268 A G OC90 Silent p.I2I 0.36 TCGA-AA-A022-01 8 133806672 133806673 - A PHF20L1 Frame_Shift_Ins p.I36Nfs*2 0.22 TCGA-AA-A022-01 8 133883698 133883698 C T TG Missense_Mutation p.A127V 0.34 tolerated(0.25) benign(0.169) TCGA-AA-A022-01 8 13424529 13424529 C T C8orf48 Missense_Mutation p.T10M 0.46 tolerated_low_confidence(0.25) benign(0.01) TCGA-AA-A022-01 8 141554388 141554388 T C AGO2 Missense_Mutation p.Q588R 0.12 tolerated(0.18) benign(0.012) TCGA-AA-A022-01 8 142228531 142228531 G A SLC45A4 Missense_Mutation p.T352M 0.31 tolerated(0.52) benign(0.003) TCGA-AA-A022-01 8 142367588 142367588 C T GPR20 Missense_Mutation p.V146M 0.24 deleterious(0.05) probably_damaging(0.997) TCGA-AA-A022-01 8 143695326 143695326 C T ARC Missense_Mutation p.A103T 0.32 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-AA-A022-01 8 144810353 144810353 C T FAM83H Silent p.A426A 0.39 TCGA-AA-A022-01 8 144998287 144998287 G A PLEC Missense_Mutation p.A2074V 0.35 unknown(0) TCGA-AA-A022-01 8 145009242 145009242 G A PLEC Silent p.Y391Y 0.27 TCGA-AA-A022-01 8 145582873 145582873 C T SLC52A2 5'UTR 0.35 TCGA-AA-A022-01 8 145621616 145621616 C T CPSF1 Missense_Mutation p.A976T 0.35 tolerated(0.14) benign(0.065) TCGA-AA-A022-01 8 145699574 145699574 G T KIFC2 3'UTR 0.50 TCGA-AA-A022-01 8 145731275 145731275 G A GPT Missense_Mutation p.A262T 0.62 deleterious(0) probably_damaging(0.961) TCGA-AA-A022-01 8 145999587 145999587 T - ZNF34 Frame_Shift_Del p.K249Nfs*75 0.26 TCGA-AA-A022-01 8 146076245 146076245 T C COMMD5 Missense_Mutation p.D160G 0.29 deleterious(0.01) possibly_damaging(0.489) TCGA-AA-A022-01 8 1497178 1497178 C T DLGAP2 Missense_Mutation p.R107C 0.33 deleterious(0) probably_damaging(0.999) TCGA-AA-A022-01 8 1497660 1497660 C T DLGAP2 Silent p.N267N 0.32 TCGA-AA-A022-01 8 1626539 1626539 C T DLGAP2 Silent p.S736S 0.29 TCGA-AA-A022-01 8 17401165 17401165 C T SLC7A2 Missense_Mutation p.T146I 0.07 deleterious(0) probably_damaging(0.988) TCGA-AA-A022-01 8 17726471 17726471 T - FGL1 Frame_Shift_Del p.N182Ifs*21 0.23 TCGA-AA-A022-01 8 17797359 17797359 A - PCM1 Frame_Shift_Del p.I260Sfs*14 0.27 TCGA-AA-A022-01 8 1853833 1853833 C A ARHGEF10 Silent p.R640R 0.20 TCGA-AA-A022-01 8 20112723 20112723 C T LZTS1 5'UTR 0.24 TCGA-AA-A022-01 8 23290492 23290492 C T ENTPD4 Missense_Mutation p.A600T 0.33 tolerated(0.32) benign(0.001) TCGA-AA-A022-01 8 23538820 23538820 G A NKX3-1 Missense_Mutation p.R207W 0.33 deleterious(0.01) possibly_damaging(0.794) TCGA-AA-A022-01 8 24771478 24771478 G A NEFM Missense_Mutation p.A58T 0.40 deleterious(0.05) unknown(0) TCGA-AA-A022-01 8 27319044 27319044 G A CHRNA2 3'UTR 0.38 TCGA-AA-A022-01 8 28385308 28385308 T C FZD3 Missense_Mutation p.I344T 0.28 deleterious(0) benign(0.158) TCGA-AA-A022-01 8 35406823 35406823 C T UNC5D Silent p.G39G 0.46 TCGA-AA-A022-01 8 37554762 37554762 G A ZNF703 Missense_Mutation p.A115T 0.54 tolerated(0.12) benign(0.003) TCGA-AA-A022-01 8 38133372 38133372 G A WHSC1L1 Silent p.C1367C 0.28 TCGA-AA-A022-01 8 38184289 38184289 G A WHSC1L1 Missense_Mutation p.T556M 0.38 tolerated(0.11) benign(0.157) TCGA-AA-A022-01 8 39695662 39695662 G A ADAM2 Missense_Mutation p.R15W 0.36 tolerated(0.17) benign(0.006) TCGA-AA-A022-01 8 41166279 41166279 C T SFRP1 Missense_Mutation p.E134K 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-AA-A022-01 8 42940492 42940492 C T FNTA 3'UTR 0.34 TCGA-AA-A022-01 8 48805866 48805866 C - PRKDC Frame_Shift_Del p.G1227Vfs*49 0.23 TCGA-AA-A022-01 8 53853440 53853440 C T NPBWR1 Missense_Mutation p.R325C 0.33 deleterious(0) probably_damaging(0.945) TCGA-AA-A022-01 8 57025655 57025655 C T MOS Missense_Mutation p.R296H 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 8 59359961 59359961 C T UBXN2B Missense_Mutation p.R283W 0.31 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 8 63492114 63492114 G T NKAIN3 Missense_Mutation p.R24M 0.28 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 8 63492159 63492159 G A NKAIN3 Missense_Mutation p.G39E 0.32 deleterious(0) probably_damaging(0.948) TCGA-AA-A022-01 8 6385198 6385198 C A ANGPT2 Splice_Site p.X149_splice 0.34 TCGA-AA-A022-01 8 68179199 68179199 T - ARFGEF1 Frame_Shift_Del p.G612Vfs*2 0.21 TCGA-AA-A022-01 8 71570094 71570095 - T LACTB2 Frame_Shift_Ins p.L104Tfs*28 0.20 TCGA-AA-A022-01 8 72755866 72755866 C T RP11-383H13.1 Missense_Mutation p.A77V 0.33 unknown(0) TCGA-AA-A022-01 8 77617144 77617144 G T ZFHX4 Missense_Mutation p.R274M 0.30 possibly_damaging(0.702) TCGA-AA-A022-01 8 82592944 82592944 C T IMPA1 Silent p.T105T 0.41 TCGA-AA-A022-01 8 87242135 87242135 A - SLC7A13 Frame_Shift_Del p.S126Afs*20 0.29 TCGA-AA-A022-01 8 87492520 87492520 G A RMDN1 Silent p.H209H 0.29 TCGA-AA-A022-01 8 88365929 88365929 C T CNBD1 Silent p.S406S 0.31 TCGA-AA-A022-01 8 88885440 88885440 G A DCAF4L2 Missense_Mutation p.R254C 0.39 deleterious(0) probably_damaging(0.991) TCGA-AA-A022-01 8 89131040 89131040 A G MMP16 Silent p.L254L 0.40 TCGA-AA-A022-01 8 95508622 95508622 T - KIAA1429 Frame_Shift_Del p.K1439Nfs*18 0.25 TCGA-AA-A022-01 8 9627762 9627764 GAG - TNKS In_Frame_Del p.G1297del 0.32 TCGA-AA-A022-01 8 97172790 97172790 C T GDF6 Missense_Mutation p.R44Q 0.39 deleterious(0.02) benign(0.123) TCGA-AA-A022-01 8 97243287 97243287 T G UQCRB 3'UTR 0.26 TCGA-AA-A022-01 9 100136833 100136833 C - CCDC180 Frame_Shift_Del p.K1583Nfs*17 0.22 TCGA-AA-A022-01 9 100971115 100971115 C T TBC1D2 Missense_Mutation p.R662H 0.24 tolerated(0.56) benign(0.005) TCGA-AA-A022-01 9 101763198 101763198 G - COL15A1 Frame_Shift_Del p.A345Lfs*13 0.20 TCGA-AA-A022-01 9 103235979 103235979 C T TMEFF1 Silent p.G51G 0.62 TCGA-AA-A022-01 9 104152833 104152833 T C MRPL50 Missense_Mutation p.N131S 0.22 tolerated(1) benign(0.006) TCGA-AA-A022-01 9 107298682 107298682 C T OR13C3 Missense_Mutation p.G138E 0.14 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 9 108151461 108151462 - AC SLC44A1 3'UTR 0.27 TCGA-AA-A022-01 9 109687544 109687544 C T ZNF462 Nonsense_Mutation p.R451* 0.22 TCGA-AA-A022-01 9 111761528 111761528 C T CTNNAL1 Silent p.T50T 0.15 TCGA-AA-A022-01 9 112015790 112015790 G A EPB41L4B Nonsense_Mutation p.R404* 0.18 TCGA-AA-A022-01 9 113341578 113341578 C A SVEP1 Silent p.L82L 0.19 TCGA-AA-A022-01 9 113562990 113562990 C T MUSK Missense_Mutation p.R778C 0.60 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 9 114176913 114176913 T C KIAA0368 Missense_Mutation p.M773V 0.22 tolerated(0.16) benign(0.036) TCGA-AA-A022-01 9 114904607 114904607 A G SUSD1 Silent p.H233H 0.43 TCGA-AA-A022-01 9 115408102 115408102 G T KIAA1958 Missense_Mutation p.K448N 0.12 tolerated(0.17) possibly_damaging(0.908) TCGA-AA-A022-01 9 115956398 115956398 C T FKBP15 Missense_Mutation p.D306N 0.44 deleterious(0.03) possibly_damaging(0.734) TCGA-AA-A022-01 9 115959230 115959230 G A FKBP15 Silent p.F282F 0.28 TCGA-AA-A022-01 9 116299183 116299184 - C RGS3 Frame_Shift_Ins p.D677Gfs*6 0.26 TCGA-AA-A022-01 9 116305 116305 G T FOXD4 3'UTR 0.12 TCGA-AA-A022-01 9 116972 116972 G A FOXD4 Missense_Mutation p.A383V 0.39 tolerated(0.16) benign(0.031) TCGA-AA-A022-01 9 117786408 117786408 G A TNC Silent p.S2113S 0.10 TCGA-AA-A022-01 9 119462148 119462148 T G TRIM32 3'UTR 0.22 TCGA-AA-A022-01 9 119582946 119582946 C T ASTN2 Silent p.T668T 0.19 TCGA-AA-A022-01 9 121929600 121929600 C T BRINP1 Missense_Mutation p.G683D 0.17 deleterious(0) benign(0.29) TCGA-AA-A022-01 9 122011351 122011351 G A BRINP1 Missense_Mutation p.P99L 0.25 deleterious(0) probably_damaging(0.995) TCGA-AA-A022-01 9 123177357 123177357 G A CDK5RAP2 Missense_Mutation p.R1420W 0.18 deleterious(0) probably_damaging(0.973) TCGA-AA-A022-01 9 124751546 124751546 C T TTLL11 Silent p.A489A 0.63 TCGA-AA-A022-01 9 125622272 125622272 C T RC3H2 Silent p.P591P 0.19 TCGA-AA-A022-01 9 125852055 125852055 A - RABGAP1 Frame_Shift_Del p.K816Nfs*9 0.15 TCGA-AA-A022-01 9 126777747 126777747 C T LHX2 Missense_Mutation p.R224W 0.45 deleterious(0) possibly_damaging(0.849) TCGA-AA-A022-01 9 127217142 127217142 C T GPR144 Silent p.S395S 0.43 TCGA-AA-A022-01 9 127454775 127454775 G A NR6A1 Intron 0.15 TCGA-AA-A022-01 9 128321915 128321915 C T MAPKAP1 Missense_Mutation p.R282Q 0.23 tolerated(0.28) benign(0.163) TCGA-AA-A022-01 9 129646019 129646019 C T ZBTB34 3'UTR 0.29 TCGA-AA-A022-01 9 129646242 129646242 C T ZBTB34 3'UTR 0.36 TCGA-AA-A022-01 9 129870669 129870669 G A ANGPTL2 Silent p.G114G 0.17 TCGA-AA-A022-01 9 130166034 130166034 C T SLC2A8 Silent p.N273N 0.28 TCGA-AA-A022-01 9 130287335 130287335 A G FAM129B Splice_Site p.X141_splice 0.20 TCGA-AA-A022-01 9 130485396 130485396 A G TTC16 Splice_Site p.X220_splice 0.15 TCGA-AA-A022-01 9 130689596 130689596 G A PIP5KL1 Missense_Mutation p.R192W 0.19 deleterious(0.01) probably_damaging(0.94) TCGA-AA-A022-01 9 130947917 130947917 C A CIZ1 Missense_Mutation p.G166V 0.22 deleterious(0) probably_damaging(0.965) TCGA-AA-A022-01 9 131262457 131262457 G A ODF2 Missense_Mutation p.A805T 0.34 tolerated(0.29) benign(0.095) TCGA-AA-A022-01 9 131369974 131369974 C T SPTAN1 Nonsense_Mutation p.R1380* 0.22 TCGA-AA-A022-01 9 131480648 131480650 AGA - PKN3 In_Frame_Del p.K679del 0.21 TCGA-AA-A022-01 9 131482084 131482084 C T PKN3 Missense_Mutation p.L749F 0.12 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 9 131559435 131559435 T C TBC1D13 Missense_Mutation p.V162A 0.29 deleterious(0) possibly_damaging(0.786) TCGA-AA-A022-01 9 131670374 131670374 G A LRRC8A Missense_Mutation p.A311T 0.22 tolerated(1) probably_damaging(0.984) TCGA-AA-A022-01 9 131770942 131770942 G - SH3GLB2 3'UTR 0.25 TCGA-AA-A022-01 9 132084319 132084319 G A C9orf106 RNA 0.17 TCGA-AA-A022-01 9 132671201 132671201 T C FNBP1 Silent p.L421L 0.12 TCGA-AA-A022-01 9 133339541 133339541 C - ASS1 Frame_Shift_Del p.Q138Rfs*2 0.14 TCGA-AA-A022-01 9 133759812 133759812 G A ABL1 Missense_Mutation p.R731H 0.40 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-AA-A022-01 9 133760024 133760024 C - ABL1 Frame_Shift_Del p.R804Gfs*3 0.16 TCGA-AA-A022-01 9 134183501 134183501 C T PPAPDC3 Missense_Mutation p.R215C 0.39 deleterious(0) probably_damaging(0.977) TCGA-AA-A022-01 9 134363281 134363281 G A PRRC2B Missense_Mutation p.S2008N 0.51 tolerated(0.27) benign(0.005) TCGA-AA-A022-01 9 135277709 135277709 T - TTF1 Frame_Shift_Del p.K167Rfs*101 0.09 TCGA-AA-A022-01 9 135601064 135601064 C A AK8 3'UTR 0.11 TCGA-AA-A022-01 9 135782190 135782190 G A TSC1 Silent p.L456L 0.21 TCGA-AA-A022-01 9 136508631 136508631 G A DBH Missense_Mutation p.G281R 0.09 deleterious(0) probably_damaging(0.993) TCGA-AA-A022-01 9 136555642 136555642 A G SARDH Silent p.G643G 0.26 TCGA-AA-A022-01 9 136582526 136582526 T C SARDH Missense_Mutation p.T358A 0.28 tolerated(0.69) benign(0.008) TCGA-AA-A022-01 9 137005842 137005842 A G WDR5 Silent p.P33P 0.06 TCGA-AA-A022-01 9 137708907 137708907 G - COL5A1 Frame_Shift_Del p.P1388Lfs*100 0.42 TCGA-AA-A022-01 9 137801784 137801784 C T FCN1 Missense_Mutation p.A281T 0.11 tolerated(0.66) benign(0.005) TCGA-AA-A022-01 9 137982070 137982070 G A OLFM1 Nonsense_Mutation p.W42* 0.25 TCGA-AA-A022-01 9 137989712 137989712 T - OLFM1 Intron 0.16 TCGA-AA-A022-01 9 138235243 138235243 C T C9orf62 5'UTR 0.16 TCGA-AA-A022-01 9 138379640 138379640 G - PPP1R26 Frame_Shift_Del p.G1097Afs*57 0.19 TCGA-AA-A022-01 9 138606496 138606496 C A KCNT1 Missense_Mutation p.L62M 0.35 tolerated_low_confidence(0.05) possibly_damaging(0.594) TCGA-AA-A022-01 9 138716727 138716727 C T CAMSAP1 Splice_Site p.X408_splice 0.15 TCGA-AA-A022-01 9 139276485 139276485 G - SNAPC4 Frame_Shift_Del p.P703Qfs*38 0.20 TCGA-AA-A022-01 9 139301730 139301730 G A SDCCAG3 Missense_Mutation p.S229L 0.21 tolerated(0.14) benign(0.002) TCGA-AA-A022-01 9 139370534 139370534 T C SEC16A Missense_Mutation p.T512A 0.11 tolerated(0.64) benign(0.002) TCGA-AA-A022-01 9 139396277 139396277 C T NOTCH1 Missense_Mutation p.R1854H 0.52 deleterious(0) possibly_damaging(0.816) TCGA-AA-A022-01 9 139396303 139396303 C T NOTCH1 Silent p.Q1845Q 0.23 TCGA-AA-A022-01 9 139732080 139732080 G A RABL6 Silent p.T365T 0.26 TCGA-AA-A022-01 9 139740402 139740402 G A C9orf172 Silent p.S512S 0.26 TCGA-AA-A022-01 9 139740819 139740819 G A C9orf172 Silent p.A651A 0.42 TCGA-AA-A022-01 9 139835461 139835461 G A FBXW5 Silent p.S540S 0.22 TCGA-AA-A022-01 9 139910760 139910760 C T ABCA2 Silent p.A1029A 0.49 TCGA-AA-A022-01 9 139925138 139925138 C A FUT7 3'UTR 0.22 TCGA-AA-A022-01 9 139926069 139926069 G - FUT7 Frame_Shift_Del p.P41Rfs*38 0.32 TCGA-AA-A022-01 9 140051433 140051433 G A GRIN1 Silent p.P325P 0.53 TCGA-AA-A022-01 9 140108286 140108286 C T NDOR1 Silent p.S122S 0.20 TCGA-AA-A022-01 9 140137054 140137054 C T TUBB4B Silent p.D128D 0.53 TCGA-AA-A022-01 9 140328471 140328471 G A NOXA1 Missense_Mutation p.A412T 0.13 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 9 140344073 140344073 T C NSMF Silent p.S491S 0.56 TCGA-AA-A022-01 9 14770771 14770771 T C FREM1 Missense_Mutation p.T1631A 0.09 tolerated(0.25) benign(0.011) TCGA-AA-A022-01 9 14848727 14848727 A G FREM1 Silent p.P399P 0.19 TCGA-AA-A022-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.25 TCGA-AA-A022-01 9 2029048 2029048 C T SMARCA2 Missense_Mutation p.A9V 0.18 unknown(0) TCGA-AA-A022-01 9 2039812 2039812 G A SMARCA2 Silent p.Q234Q 0.16 TCGA-AA-A022-01 9 20413785 20413785 C T MLLT3 Silent p.P353P 0.17 TCGA-AA-A022-01 9 2060867 2060867 C T SMARCA2 Missense_Mutation p.R525C 0.03 possibly_damaging(0.689) TCGA-AA-A022-01 9 22006194 22006194 G A CDKN2B Missense_Mutation p.A70V 0.40 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 9 26886120 26886120 T A CAAP1 Missense_Mutation p.I191F 0.43 deleterious(0.05) benign(0.011) TCGA-AA-A022-01 9 26928096 26928096 A G PLAA Splice_Site p.X189_splice 0.03 TCGA-AA-A022-01 9 27206637 27206637 A - TEK Frame_Shift_Del p.N809Tfs*21 0.17 TCGA-AA-A022-01 9 32473004 32473015 CAATATGCCAGG - DDX58 In_Frame_Del p.P658_L661del 0.13 TCGA-AA-A022-01 9 32631859 32631859 C T TAF1L Missense_Mutation p.R1240Q 0.05 deleterious(0.04) benign(0.133) TCGA-AA-A022-01 9 33548767 33548767 G T ANKRD18B Nonsense_Mutation p.E599* 0.63 TCGA-AA-A022-01 9 33676806 33676806 C T PTENP1 RNA 0.20 TCGA-AA-A022-01 9 33817924 33817924 T C UBE2R2 Missense_Mutation p.Y57H 0.17 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 9 34257972 34257972 C A KIF24 Nonsense_Mutation p.E545* 0.54 TCGA-AA-A022-01 9 34370907 34370907 C T KIAA1161 Missense_Mutation p.A645T 0.05 deleterious(0.03) probably_damaging(0.97) TCGA-AA-A022-01 9 34610875 34610875 G - RPP25L Frame_Shift_Del p.P140Lfs*36 0.16 TCGA-AA-A022-01 9 34834378 34834378 G - FAM205B RNA 0.08 TCGA-AA-A022-01 9 35377554 35377554 C T UNC13B Nonsense_Mutation p.R560* 0.20 TCGA-AA-A022-01 9 35403470 35403470 C T UNC13B Missense_Mutation p.A1455V 0.05 deleterious(0.01) possibly_damaging(0.608) TCGA-AA-A022-01 9 36170694 36170694 C T CCIN Missense_Mutation p.R399W 0.31 tolerated(0.11) benign(0.007) TCGA-AA-A022-01 9 37745824 37745824 G T FRMPD1 Missense_Mutation p.E1265D 0.30 tolerated_low_confidence(0.25) benign(0.169) TCGA-AA-A022-01 9 37780636 37780637 - T EXOSC3 3'UTR 0.14 TCGA-AA-A022-01 9 38398324 38398324 T C ALDH1B1 3'UTR 0.16 TCGA-AA-A022-01 9 43861013 43861013 G A CNTNAP3B Silent p.A629A 0.11 TCGA-AA-A022-01 9 67785602 67785603 CT - FAM27E3 3'UTR 0.15 TCGA-AA-A022-01 9 6880040 6880040 C T KDM4C Nonsense_Mutation p.R220* 0.15 TCGA-AA-A022-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.11 deleterious(0.01) possibly_damaging(0.573) TCGA-AA-A022-01 9 71679915 71679915 C T FXN Missense_Mutation p.T149M 0.23 deleterious(0) probably_damaging(0.998) TCGA-AA-A022-01 9 71840276 71840276 C A TJP2 Missense_Mutation p.L368M 0.22 deleterious(0) probably_damaging(0.991) TCGA-AA-A022-01 9 71869244 71869244 G A TJP2 Missense_Mutation p.R1207H 0.35 tolerated(0.08) benign(0.077) TCGA-AA-A022-01 9 73151945 73151945 T C TRPM3 Missense_Mutation p.I1350V 0.04 tolerated_low_confidence(0.61) benign(0.032) TCGA-AA-A022-01 9 75540464 75540464 A T ALDH1A1 Missense_Mutation p.V190E 0.58 deleterious(0.03) benign(0.182) TCGA-AA-A022-01 9 77286764 77286764 G T RORB Missense_Mutation p.A391S 0.55 deleterious(0.05) benign(0.419) TCGA-AA-A022-01 9 77390808 77390808 C T TRPM6 Missense_Mutation p.V1132I 0.19 tolerated(0.35) benign(0.048) TCGA-AA-A022-01 9 82321725 82321725 C T TLE4 Missense_Mutation p.R283C 0.25 tolerated(0.08) possibly_damaging(0.841) TCGA-AA-A022-01 9 86276366 86276366 A G UBQLN1 3'UTR 0.26 TCGA-AA-A022-01 9 86618505 86618505 A G RMI1 3'UTR 0.24 TCGA-AA-A022-01 9 88193940 88193940 T - AGTPBP1 Frame_Shift_Del p.K1039Nfs*10 0.25 TCGA-AA-A022-01 9 90256962 90256962 A - DAPK1 Frame_Shift_Del p.K304Nfs*8 0.16 TCGA-AA-A022-01 9 90264932 90264932 C A DAPK1 Silent p.R509R 0.20 TCGA-AA-A022-01 9 90321496 90321496 G T DAPK1 Missense_Mutation p.W1170C 0.05 deleterious(0) probably_damaging(0.991) TCGA-AA-A022-01 9 90503331 90503331 A T SPATA31E1 Missense_Mutation p.D1310V 0.19 tolerated(0.05) possibly_damaging(0.661) TCGA-AA-A022-01 9 91041330 91041330 C T SPIN1 5'UTR 0.18 TCGA-AA-A022-01 9 91609148 91609148 C - C9orf47 3'UTR 0.19 TCGA-AA-A022-01 9 94487262 94487262 G A ROR2 Missense_Mutation p.A505V 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-AA-A022-01 9 95040520 95040520 G A IARS Missense_Mutation p.A265V 0.20 tolerated(0.16) benign(0.033) TCGA-AA-A022-01 9 95285118 95285119 - A ECM2 Frame_Shift_Ins p.L11Sfs*8 0.19 TCGA-AA-A022-01 9 95841797 95841797 C T SUSD3 Missense_Mutation p.T157M 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-AA-A022-01 9 95887312 95887312 C T NINJ1 Missense_Mutation p.A113T 0.17 tolerated(0.4) probably_damaging(0.989) TCGA-AA-A022-01 9 95947803 95947803 G A WNK2 Missense_Mutation p.D198N 0.25 unknown(0) TCGA-AA-A022-01 9 96061493 96061493 C T WNK2 Missense_Mutation p.S2059L 0.41 unknown(0) TCGA-AA-A022-01 9 96080573 96080573 T C WNK2 3'Flank 0.15 TCGA-AA-A022-01 9 96422668 96422668 C A PHF2 Silent p.P508P 0.48 TCGA-AA-A022-01 9 97081278 97081278 T C NUTM2F Silent p.G580G 0.38 TCGA-AA-A022-01 9 97718205 97718205 C T C9orf3 Missense_Mutation p.R594W 0.18 deleterious(0.04) benign(0.192) TCGA-AA-A022-01 9 98212156 98212156 G A PTCH1 Silent p.P1172P 0.10 TCGA-AA-A022-01 9 98229498 98229498 G A PTCH1 Silent p.Y820Y 0.20 TCGA-AA-A022-01 9 99694699 99694699 A G NUTM2G Missense_Mutation p.I238V 0.15 deleterious(0.01) possibly_damaging(0.479) TCGA-AA-A022-01 9 99795260 99795260 C T CTSV Missense_Mutation p.A326T 0.33 deleterious(0.04) possibly_damaging(0.736) TCGA-AA-A022-01 9 99795330 99795330 G T CTSV Missense_Mutation p.S302R 0.14 deleterious(0.01) possibly_damaging(0.905) TCGA-AA-A022-01 X 100911266 100911266 T C ARMCX2 Missense_Mutation p.I437V 0.58 tolerated(0.07) probably_damaging(0.972) TCGA-AA-A022-01 X 101395943 101395943 A G TCEAL6 Missense_Mutation p.S121P 0.64 tolerated(0.21) possibly_damaging(0.601) TCGA-AA-A022-01 X 102864676 102864676 A T TCEAL3 3'UTR 0.03 TCGA-AA-A022-01 X 107412774 107412774 G A COL4A6 Silent p.G1215G 0.03 TCGA-AA-A022-01 X 107977961 107977961 C A IRS4 Missense_Mutation p.Q538H 0.61 tolerated_low_confidence(0.17) unknown(0) TCGA-AA-A022-01 X 109247078 109247078 G A TMEM164 Missense_Mutation p.G26S 0.61 deleterious(0.01) probably_damaging(1) TCGA-AA-A022-01 X 111020011 111020011 G A TRPC5 Missense_Mutation p.P818S 0.28 tolerated_low_confidence(1) benign(0) TCGA-AA-A022-01 X 111698858 111698858 C T ZCCHC16 Missense_Mutation p.P301L 0.68 tolerated(0.45) benign(0.143) TCGA-AA-A022-01 X 114424379 114424379 C T RBMXL3 Silent p.G125G 0.40 TCGA-AA-A022-01 X 117677528 117677528 T C DOCK11 Missense_Mutation p.F122L 0.10 deleterious(0) benign(0.083) TCGA-AA-A022-01 X 119388200 119388200 G A ZBTB33 Silent p.V310V 0.64 TCGA-AA-A022-01 X 120008747 120008747 T A CT47B1 Intron 0.74 TCGA-AA-A022-01 X 125299587 125299587 G A DCAF12L2 Silent p.N107N 0.05 TCGA-AA-A022-01 X 128605193 128605193 T - SMARCA1 Frame_Shift_Del p.K851Nfs*33 0.37 TCGA-AA-A022-01 X 128945382 128945382 C A ZDHHC9 Missense_Mutation p.S294I 0.58 deleterious(0) probably_damaging(0.991) TCGA-AA-A022-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.34 TCGA-AA-A022-01 X 129208635 129208635 G A ELF4 Silent p.D56D 0.05 TCGA-AA-A022-01 X 129537773 129537773 T C RBMX2 Intron 0.67 TCGA-AA-A022-01 X 129799638 129799638 G A ENOX2 Silent p.S360S 0.27 TCGA-AA-A022-01 X 130220560 130220560 T C ARHGAP36 Silent p.D469D 0.29 TCGA-AA-A022-01 X 130411114 130411114 G - IGSF1 Frame_Shift_Del p.H808Tfs*4 0.37 TCGA-AA-A022-01 X 130417191 130417191 C T IGSF1 Missense_Mutation p.A239T 0.06 tolerated(0.44) probably_damaging(0.999) TCGA-AA-A022-01 X 132458442 132458442 G A GPC4 Missense_Mutation p.R148C 0.03 deleterious(0) probably_damaging(0.916) TCGA-AA-A022-01 X 134679422 134679422 C T DDX26B Silent p.L88L 0.23 TCGA-AA-A022-01 X 136113520 136113520 G A GPR101 Missense_Mutation p.T105M 0.69 deleterious(0.01) probably_damaging(0.991) TCGA-AA-A022-01 X 141290687 141290687 T C MAGEC2 Missense_Mutation p.S363G 0.60 tolerated(0.19) unknown(0) TCGA-AA-A022-01 X 150348632 150348632 G A GPR50 Missense_Mutation p.V193I 0.56 tolerated(0.08) benign(0.111) TCGA-AA-A022-01 X 151130966 151130966 G A GABRE Silent p.H164H 0.23 TCGA-AA-A022-01 X 153009011 153009011 C T ABCD1 Missense_Mutation p.A687V 0.07 tolerated(0.21) benign(0.003) TCGA-AA-A022-01 X 153055688 153055688 G A IDH3G Silent p.I65I 0.58 TCGA-AA-A022-01 X 153216408 153216408 C T HCFC1 Silent p.K1853K 0.73 TCGA-AA-A022-01 X 153295696 153295696 A - MECP2 3'UTR 0.88 TCGA-AA-A022-01 X 153577928 153577928 G - FLNA Frame_Shift_Del p.R2520Vfs*16 0.40 TCGA-AA-A022-01 X 15527528 15527528 C T BMX Missense_Mutation p.T72M 0.75 deleterious(0.04) probably_damaging(0.956) TCGA-AA-A022-01 X 15591550 15591550 T C ACE2 Missense_Mutation p.D494G 0.06 deleterious(0.01) benign(0.329) TCGA-AA-A022-01 X 15596408 15596408 G A ACE2 Silent p.D367D 0.76 TCGA-AA-A022-01 X 18660093 18660093 C - RS1 3'UTR 0.40 TCGA-AA-A022-01 X 18943834 18943834 G A PHKA2 Silent p.T507T 0.27 TCGA-AA-A022-01 X 19984666 19984666 G A CXorf23 Missense_Mutation p.A48V 0.03 tolerated(0.28) benign(0.099) TCGA-AA-A022-01 X 21675817 21675817 G A KLHL34 Silent p.D30D 0.92 TCGA-AA-A022-01 X 30852223 30852223 G A TAB3 Silent p.S645S 0.73 TCGA-AA-A022-01 X 31089872 31089872 C T FTHL17 Missense_Mutation p.A67T 0.27 deleterious(0.05) possibly_damaging(0.733) TCGA-AA-A022-01 X 38186635 38186635 G A RPGR 5'UTR 0.13 TCGA-AA-A022-01 X 39933665 39933665 G A BCOR Nonsense_Mutation p.Q312* 0.72 TCGA-AA-A022-01 X 40982871 40982871 C T USP9X 5'UTR 0.27 TCGA-AA-A022-01 X 46618244 46618244 A G SLC9A7 Missense_Mutation p.L74P 0.76 deleterious(0) probably_damaging(0.977) TCGA-AA-A022-01 X 48457193 48457193 G A WDR13 Missense_Mutation p.A44T 0.40 tolerated(0.61) benign(0.014) TCGA-AA-A022-01 X 48762125 48762130 GAGGCA - SLC35A2 In_Frame_Del p.A355_S356del 0.57 TCGA-AA-A022-01 X 48825998 48825998 G T KCND1 Missense_Mutation p.F227L 0.22 deleterious(0) benign(0.065) TCGA-AA-A022-01 X 48826136 48826136 C T KCND1 Silent p.T181T 0.16 TCGA-AA-A022-01 X 50052615 50052616 - C CCNB3 Frame_Shift_Ins p.T485Hfs*37 0.19 TCGA-AA-A022-01 X 53106815 53106815 A G GPR173 Missense_Mutation p.I338V 0.30 tolerated(0.54) benign(0.042) TCGA-AA-A022-01 X 53432287 53432287 C A SMC1A Nonsense_Mutation p.G650* 0.30 TCGA-AA-A022-01 X 53458004 53458004 A - RIBC1 3'UTR 0.39 TCGA-AA-A022-01 X 53589856 53589856 G A HUWE1 Silent p.D2380D 0.29 TCGA-AA-A022-01 X 54587166 54587166 C - GNL3L 3'UTR 0.37 TCGA-AA-A022-01 X 56259639 56259639 C T KLF8 5'UTR 0.79 TCGA-AA-A022-01 X 63411921 63411921 A G AMER1 Missense_Mutation p.Y416H 0.03 tolerated(0.11) probably_damaging(0.972) TCGA-AA-A022-01 X 64708944 64708944 G A ZC3H12B Missense_Mutation p.R88H 0.63 tolerated(0.63) benign(0.002) TCGA-AA-A022-01 X 64887616 64887616 G A MSN 5'UTR 0.75 TCGA-AA-A022-01 X 69424253 69424253 T C DGAT2L6 Missense_Mutation p.F249S 0.24 deleterious(0) benign(0.119) TCGA-AA-A022-01 X 69507147 69507147 G A PDZD11 Missense_Mutation p.R123C 0.04 tolerated(0.14) benign(0.005) TCGA-AA-A022-01 X 69673621 69673621 G A DLG3 Missense_Mutation p.R427H 0.33 deleterious(0.04) probably_damaging(0.997) TCGA-AA-A022-01 X 70444255 70444255 C T GJB1 Missense_Mutation p.S233L 0.69 tolerated(0.13) possibly_damaging(0.885) TCGA-AA-A022-01 X 70837157 70837157 G A CXCR3 Silent p.F102F 0.71 TCGA-AA-A022-01 X 73963700 73963700 G A KIAA2022 Missense_Mutation p.A231V 0.57 deleterious(0.01) benign(0.281) TCGA-AA-A022-01 X 75649509 75649509 G A MAGEE1 Missense_Mutation p.A396T 0.08 deleterious(0) benign(0.163) TCGA-AA-A022-01 X 77264680 77264680 G A ATP7A Missense_Mutation p.V597M 0.61 deleterious(0) probably_damaging(1) TCGA-AA-A022-01 X 82763849 82763849 G A POU3F4 Missense_Mutation p.G173S 0.62 tolerated(0.38) benign(0.002) TCGA-AA-A022-01 X 84614599 84614599 G A POF1B Missense_Mutation p.P132S 0.65 tolerated_low_confidence(0.22) probably_damaging(0.999) TCGA-AA-A022-01 X 90691133 90691133 G A PABPC5 Missense_Mutation p.R186Q 0.69 deleterious(0) probably_damaging(0.986) TCGA-AA-A022-01 X 92927789 92927789 C T NAP1L3 Missense_Mutation p.S172N 0.60 tolerated(0.09) possibly_damaging(0.517) TCGA-AA-A022-01 X 96203956 96203956 G A DIAPH2 Missense_Mutation p.R511Q 0.64 deleterious(0.01) unknown(0) TCGA-AA-A022-01 X 9863764 9863764 G A SHROOM2 Missense_Mutation p.A606T 0.53 tolerated(0.87) benign(0) TCGA-AA-A022-01 X 99551531 99551531 G T PCDH19 Missense_Mutation p.P1064H 0.10 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AA-A022-01 X 99658566 99658566 C T PCDH19 Silent p.E748E 0.23 TCGA-AA-A022-01 X 99891620 99891620 G A TSPAN6 Silent p.Y24Y 0.20 TCGA-AD-5900-01 10 100189381 100189381 G A HPS1 Missense_Mutation p.L296F 0.19 tolerated(0.48) benign(0.011) TCGA-AD-5900-01 10 101934006 101934006 G A ERLIN1 Nonsense_Mutation p.Q155* 0.27 TCGA-AD-5900-01 10 102039982 102039982 G T BLOC1S2 Missense_Mutation p.A99D 0.29 tolerated(0.44) benign(0.211) TCGA-AD-5900-01 10 102247788 102247788 C A SEC31B Missense_Mutation p.G1119V 0.31 tolerated(0.06) possibly_damaging(0.461) TCGA-AD-5900-01 10 103345715 103345715 G - POLL Frame_Shift_Del p.P105Rfs*6 0.09 TCGA-AD-5900-01 10 103371430 103371430 G A FBXW4 Silent p.Y358Y 0.28 TCGA-AD-5900-01 10 103587995 103587995 G A KCNIP2 Silent p.S185S 0.27 TCGA-AD-5900-01 10 103868806 103868806 C T LDB1 Missense_Mutation p.A329T 0.05 tolerated(0.13) benign(0.192) TCGA-AD-5900-01 10 103901206 103901206 C T PPRC1 Missense_Mutation p.P981S 0.32 tolerated_low_confidence(0.1) benign(0.031) TCGA-AD-5900-01 10 105048142 105048142 C T INA Missense_Mutation p.R406C 0.36 deleterious(0) probably_damaging(0.93) TCGA-AD-5900-01 10 105143007 105143007 T C TAF5 Missense_Mutation p.I516T 0.05 deleterious(0) benign(0.155) TCGA-AD-5900-01 10 105233405 105233405 G A CALHM3 Silent p.C200C 0.17 TCGA-AD-5900-01 10 105953637 105953637 C T WDR96 Missense_Mutation p.V477M 0.32 deleterious(0) probably_damaging(0.927) TCGA-AD-5900-01 10 106976746 106976746 T C SORCS3 Missense_Mutation p.V867A 0.28 tolerated(0.67) possibly_damaging(0.731) TCGA-AD-5900-01 10 112257965 112257965 G A DUSP5 Missense_Mutation p.R29Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 10 112572540 112572540 C - RBM20 Frame_Shift_Del p.H797Ifs*113 0.28 TCGA-AD-5900-01 10 113915903 113915903 C T GPAM Intron 0.12 TCGA-AD-5900-01 10 115481532 115481532 A - CASP7 Frame_Shift_Del p.A159Lfs*17 0.17 TCGA-AD-5900-01 10 115594792 115594792 T C DCLRE1A 3'UTR 0.34 TCGA-AD-5900-01 10 116073649 116073649 T C AFAP1L2 Missense_Mutation p.Q258R 0.15 deleterious(0) possibly_damaging(0.864) TCGA-AD-5900-01 10 120085726 120085726 A G FAM204A Silent p.A161A 0.24 TCGA-AD-5900-01 10 120825026 120825026 G A EIF3A Missense_Mutation p.T336M 0.11 deleterious(0.03) unknown(0) TCGA-AD-5900-01 10 120896092 120896092 G A FAM45A Missense_Mutation p.R336Q 0.25 tolerated(0.13) benign(0.062) TCGA-AD-5900-01 10 124248467 124248467 C T HTRA1 Silent p.D174D 0.27 TCGA-AD-5900-01 10 127542590 127542591 CT - DHX32 Frame_Shift_Del p.E344Vfs*62 0.20 TCGA-AD-5900-01 10 127555656 127555656 C T DHX32 Missense_Mutation p.A127T 0.27 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 10 127685186 127685186 T C FANK1 Missense_Mutation p.Y156H 0.25 tolerated(0.06) probably_damaging(0.946) TCGA-AD-5900-01 10 12940404 12940404 C T CCDC3 3'UTR 0.22 TCGA-AD-5900-01 10 135084525 135084525 A G ADAM8 Missense_Mutation p.L475P 0.33 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 10 15255942 15255942 C T FAM171A1 Missense_Mutation p.E549K 0.11 tolerated(0.11) probably_damaging(0.984) TCGA-AD-5900-01 10 16980984 16980984 T - CUBN Frame_Shift_Del p.N1904Tfs*7 0.19 TCGA-AD-5900-01 10 16982090 16982090 A G CUBN Missense_Mutation p.V1830A 0.10 deleterious(0) possibly_damaging(0.528) TCGA-AD-5900-01 10 17271632 17271632 C T VIM Missense_Mutation p.R71W 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-AD-5900-01 10 17747018 17747018 T C STAM Silent p.I350I 0.25 TCGA-AD-5900-01 10 22048256 22048256 C A DNAJC1 Missense_Mutation p.S480I 0.27 deleterious(0.03) probably_damaging(0.926) TCGA-AD-5900-01 10 22896899 22896899 C T PIP4K2A Missense_Mutation p.R99H 0.21 deleterious(0.03) possibly_damaging(0.867) TCGA-AD-5900-01 10 24833058 24833058 C G KIAA1217 Missense_Mutation p.A1620G 0.14 deleterious(0) probably_damaging(0.995) TCGA-AD-5900-01 10 24833406 24833406 G A KIAA1217 Missense_Mutation p.R1736H 0.23 tolerated(0.12) possibly_damaging(0.488) TCGA-AD-5900-01 10 27035540 27035540 T - PDSS1 3'UTR 0.30 TCGA-AD-5900-01 10 29821030 29821030 C T SVIL Missense_Mutation p.R637Q 0.28 deleterious(0.01) benign(0.135) TCGA-AD-5900-01 10 3155580 3155580 C A PFKP Missense_Mutation p.A414D 0.18 deleterious(0) possibly_damaging(0.888) TCGA-AD-5900-01 10 38126593 38126595 CTC - ZNF248 In_Frame_Del p.G63del 0.26 TCGA-AD-5900-01 10 48438695 48438695 C T GDF10 Missense_Mutation p.A6T 0.16 tolerated_low_confidence(0.67) benign(0.001) TCGA-AD-5900-01 10 49654462 49654462 C T ARHGAP22 Missense_Mutation p.G706E 0.22 tolerated(0.08) probably_damaging(0.967) TCGA-AD-5900-01 10 50339643 50339643 T C FAM170B 3'UTR 0.27 TCGA-AD-5900-01 10 50724499 50724499 C T ERCC6-PGBD3 Missense_Mutation p.R689Q 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-AD-5900-01 10 50824639 50824639 T C CHAT Silent p.S126S 0.27 TCGA-AD-5900-01 10 52502712 52502712 C T ASAH2B Missense_Mutation p.R10C 0.26 deleterious_low_confidence(0) benign(0.009) TCGA-AD-5900-01 10 54074811 54074811 C T DKK1 Silent p.H124H 0.25 TCGA-AD-5900-01 10 55582399 55582399 C T PCDH15 Missense_Mutation p.C1698Y 0.26 deleterious_low_confidence(0.03) benign(0.091) TCGA-AD-5900-01 10 61829483 61829483 C T ANK3 Missense_Mutation p.R3719H 0.32 probably_damaging(0.98) TCGA-AD-5900-01 10 6262754 6262754 C A PFKFB3 Silent p.R253R 0.26 TCGA-AD-5900-01 10 62631337 62631337 C T RHOBTB1 Missense_Mutation p.R665H 0.28 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 10 62631980 62631980 G T RHOBTB1 Nonsense_Mutation p.C628* 0.08 TCGA-AD-5900-01 10 63422786 63422786 C T C10orf107 5'UTR 0.17 TCGA-AD-5900-01 10 69665951 69665951 A - SIRT1 Intron 0.20 TCGA-AD-5900-01 10 70645583 70645583 C T STOX1 Silent p.G677G 0.08 TCGA-AD-5900-01 10 71136781 71136781 C T HK1 Missense_Mutation p.R327W 0.26 deleterious(0.01) possibly_damaging(0.861) TCGA-AD-5900-01 10 71640303 71640303 C - COL13A1 Frame_Shift_Del p.P162Lfs*33 0.30 TCGA-AD-5900-01 10 72061171 72061171 G - LRRC20 Frame_Shift_Del p.P165Rfs*72 0.26 TCGA-AD-5900-01 10 73562768 73562768 G T CDH23 Missense_Mutation p.M292I 0.26 tolerated(0.22) benign(0) TCGA-AD-5900-01 10 73565704 73565704 C A CDH23 Missense_Mutation p.L432I 0.20 tolerated(0.89) benign(0.262) TCGA-AD-5900-01 10 75255502 75255502 C T PPP3CB Intron 0.31 TCGA-AD-5900-01 10 75413125 75413125 C T SYNPO2L Missense_Mutation p.A182T 0.23 tolerated(0.4) probably_damaging(0.992) TCGA-AD-5900-01 10 76790310 76790310 A G KAT6B Missense_Mutation p.S1910G 0.18 benign(0.159) TCGA-AD-5900-01 10 76797819 76797819 G A DUPD1 Silent p.H146H 0.30 TCGA-AD-5900-01 10 77159886 77159886 G A ZNF503 Missense_Mutation p.P188S 0.15 tolerated(0.55) benign(0.006) TCGA-AD-5900-01 10 81275869 81275869 G A EIF5AL1 3'UTR 0.33 TCGA-AD-5900-01 10 84738861 84738861 C T NRG3 Missense_Mutation p.T523M 0.19 deleterious(0.04) possibly_damaging(0.901) TCGA-AD-5900-01 10 84745273 84745274 - C NRG3 Frame_Shift_Ins p.L670Pfs*18 0.28 TCGA-AD-5900-01 10 93744151 93744151 C A BTAF1 Missense_Mutation p.A806D 0.10 deleterious(0.01) probably_damaging(0.928) TCGA-AD-5900-01 10 95386565 95386565 G A PDE6C Silent p.T336T 0.07 TCGA-AD-5900-01 10 96354463 96354463 G A HELLS Silent p.S700S 0.25 TCGA-AD-5900-01 10 98469552 98469552 C T PIK3AP1 Missense_Mutation p.V68M 0.26 tolerated(0.09) benign(0.03) TCGA-AD-5900-01 10 98744986 98744986 T G C10orf12 3'UTR 0.24 TCGA-AD-5900-01 10 99225906 99225906 C A MMS19 Missense_Mutation p.A506S 0.07 tolerated(0.26) benign(0.074) TCGA-AD-5900-01 11 1016238 1016238 G A MUC6 Missense_Mutation p.T2188M 0.27 benign(0.03) TCGA-AD-5900-01 11 1020163 1020163 G T MUC6 Silent p.T1245T 0.24 TCGA-AD-5900-01 11 103055671 103055671 G A DYNC2H1 Missense_Mutation p.G2175D 0.26 probably_damaging(0.956) TCGA-AD-5900-01 11 107974989 107974989 A G CUL5 Missense_Mutation p.I741V 0.25 tolerated(0.13) benign(0.33) TCGA-AD-5900-01 11 1081115 1081115 C A MUC2 Missense_Mutation p.L471M 0.10 possibly_damaging(0.462) TCGA-AD-5900-01 11 108384917 108384917 G A EXPH5 Silent p.P439P 0.25 TCGA-AD-5900-01 11 108594056 108594056 G A DDX10 Missense_Mutation p.S611N 0.26 tolerated(0.54) benign(0) TCGA-AD-5900-01 11 10874300 10874300 A - ZBED5 3'UTR 0.26 TCGA-AD-5900-01 11 111575828 111575828 C T SIK2 Missense_Mutation p.R356W 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 11 111781031 111781032 - A CRYAB Intron 0.25 TCGA-AD-5900-01 11 113813759 113813759 T C HTR3B Missense_Mutation p.I251T 0.23 deleterious(0) probably_damaging(0.957) TCGA-AD-5900-01 11 113860365 113860365 C T HTR3A Silent p.A477A 0.39 TCGA-AD-5900-01 11 114577230 114577230 A - NXPE2 Frame_Shift_Del p.K421Nfs*5 0.22 TCGA-AD-5900-01 11 1159377 1159377 G A MUC5AC Missense_Mutation p.V452M 0.35 tolerated(0.11) probably_damaging(0.969) TCGA-AD-5900-01 11 116692169 116692169 G A APOA4 Missense_Mutation p.T202M 0.27 tolerated(0.13) benign(0.273) TCGA-AD-5900-01 11 117314617 117314617 C T DSCAML1 Missense_Mutation p.E1343K 0.19 tolerated(0.16) possibly_damaging(0.677) TCGA-AD-5900-01 11 117651425 117651425 G A DSCAML1 Silent p.A109A 0.22 TCGA-AD-5900-01 11 118520891 118520891 G A PHLDB1 Missense_Mutation p.S1255N 0.30 deleterious(0.03) possibly_damaging(0.908) TCGA-AD-5900-01 11 119057350 119057350 G T PDZD3 Missense_Mutation p.R94M 0.21 deleterious(0) possibly_damaging(0.882) TCGA-AD-5900-01 11 119182825 119182825 G A MCAM Silent p.S360S 0.43 TCGA-AD-5900-01 11 119206223 119206223 C T RNF26 Missense_Mutation p.R131C 0.35 deleterious(0) benign(0.106) TCGA-AD-5900-01 11 122944318 122944318 G A CLMP Missense_Mutation p.A329V 0.31 tolerated(0.19) benign(0.146) TCGA-AD-5900-01 11 123479453 123479453 C A GRAMD1B Missense_Mutation p.L391I 0.29 tolerated(0.24) benign(0.015) TCGA-AD-5900-01 11 123848009 123848009 T G OR10S1 Silent p.T130T 0.27 TCGA-AD-5900-01 11 123909288 123909288 C T OR10G7 Missense_Mutation p.A141T 0.06 tolerated(0.56) benign(0.075) TCGA-AD-5900-01 11 124793888 124793888 T C HEPACAM Missense_Mutation p.Q149R 0.39 tolerated(0.34) benign(0.374) TCGA-AD-5900-01 11 126136698 126136698 C T SRPR Missense_Mutation p.E216K 0.27 tolerated(0.71) benign(0.1) TCGA-AD-5900-01 11 1267931 1267931 T C MUC5B Missense_Mutation p.V3274A 0.17 unknown(0) TCGA-AD-5900-01 11 1271923 1271923 C T MUC5B Missense_Mutation p.P4605S 0.27 unknown(0) TCGA-AD-5900-01 11 128839183 128839183 T C ARHGAP32 Silent p.K1961K 0.29 TCGA-AD-5900-01 11 128839787 128839787 C T ARHGAP32 Missense_Mutation p.R1760H 0.17 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 11 132204992 132204992 C T NTM Silent p.C340C 0.30 TCGA-AD-5900-01 11 133815978 133815978 C T IGSF9B Silent p.P80P 0.23 TCGA-AD-5900-01 11 134118753 134118753 T - THYN1 Frame_Shift_Del p.N194Ifs*15 0.25 TCGA-AD-5900-01 11 14281164 14281164 G A RP11-21L19.1 3'Flank 0.20 TCGA-AD-5900-01 11 14501222 14501222 A T COPB1 Silent p.A417A 0.31 TCGA-AD-5900-01 11 1501990 1501990 C T MOB2 Missense_Mutation p.R79H 0.22 tolerated(0.28) probably_damaging(0.91) TCGA-AD-5900-01 11 17485083 17485083 C T ABCC8 Missense_Mutation p.A161T 0.22 tolerated(0.23) benign(0.009) TCGA-AD-5900-01 11 17519725 17519725 G A USH1C Missense_Mutation p.A825V 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AD-5900-01 11 1780830 1780830 G - CTSD Frame_Shift_Del p.Q90Sfs*43 0.41 TCGA-AD-5900-01 11 18956154 18956154 C T MRGPRX1 Missense_Mutation p.A60T 0.25 tolerated(0.09) benign(0.072) TCGA-AD-5900-01 11 19077833 19077834 - A MRGPRX2 Frame_Shift_Ins p.I40Hfs*53 0.13 TCGA-AD-5900-01 11 19180545 19180546 - T ZDHHC13 Frame_Shift_Ins p.W358Lfs*13 0.23 TCGA-AD-5900-01 11 19955644 19955644 C A NAV2 Silent p.S641S 0.22 TCGA-AD-5900-01 11 20127175 20127175 G A NAV2 Missense_Mutation p.R2307H 0.19 deleterious(0.05) probably_damaging(0.994) TCGA-AD-5900-01 11 21135134 21135134 G T NELL1 Splice_Site p.X434_splice 0.27 TCGA-AD-5900-01 11 2323355 2323355 A G TSPAN32 5'UTR 0.26 TCGA-AD-5900-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.29 TCGA-AD-5900-01 11 30034022 30034022 G A KCNA4 Silent p.R68R 0.25 TCGA-AD-5900-01 11 30352566 30352566 G A ARL14EP Missense_Mutation p.R24H 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.674) TCGA-AD-5900-01 11 314978 314978 C T IFITM1 Silent p.T81T 0.30 TCGA-AD-5900-01 11 31812299 31812299 A G PAX6 Missense_Mutation p.M395T 0.26 tolerated(0.26) benign(0.028) TCGA-AD-5900-01 11 32860425 32860425 T A PRRG4 Intron 0.25 TCGA-AD-5900-01 11 33308963 33308963 C T HIPK3 Missense_Mutation p.R335W 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 11 33564561 33564561 C T KIAA1549L Silent p.A187A 0.31 TCGA-AD-5900-01 11 34111804 34111804 C T CAPRIN1 Nonsense_Mutation p.R458* 0.23 TCGA-AD-5900-01 11 4389384 4389384 T C OR52B4 Missense_Mutation p.I48V 0.23 tolerated(0.11) benign(0.032) TCGA-AD-5900-01 11 4406833 4406833 C T TRIM21 Silent p.L370L 0.28 TCGA-AD-5900-01 11 44129682 44129682 T C EXT2 Silent p.S173S 0.22 TCGA-AD-5900-01 11 45204461 45204461 C - PRDM11 Frame_Shift_Del p.P93Rfs*40 0.29 TCGA-AD-5900-01 11 46407919 46407919 C T CHRM4 Silent p.L63L 0.09 TCGA-AD-5900-01 11 46702203 46702203 C A ARHGAP1 Missense_Mutation p.V244F 0.33 deleterious(0) probably_damaging(0.979) TCGA-AD-5900-01 11 46750934 46750934 C T F2 Missense_Mutation p.L493F 0.36 tolerated(0.11) benign(0.053) TCGA-AD-5900-01 11 4676051 4676051 A T OR51E1 3'UTR 0.24 TCGA-AD-5900-01 11 46760963 46760963 C T F2 3'UTR 0.27 TCGA-AD-5900-01 11 46911849 46911849 G A LRP4 Missense_Mutation p.R632C 0.30 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 11 47354769 47354769 C T MYBPC3 Silent p.V1102V 0.21 TCGA-AD-5900-01 11 47469447 47469447 G T RAPSN Missense_Mutation p.L150M 0.46 tolerated(0.14) possibly_damaging(0.9) TCGA-AD-5900-01 11 47599757 47599757 C T KBTBD4 3'UTR 0.20 TCGA-AD-5900-01 11 47826101 47826101 C T NUP160 Silent p.Q892Q 0.23 TCGA-AD-5900-01 11 49229880 49229880 G A FOLH1 Silent p.L28L 0.43 TCGA-AD-5900-01 11 5444142 5444142 C T OR51Q1 Missense_Mutation p.R238C 0.29 deleterious(0) probably_damaging(0.954) TCGA-AD-5900-01 11 5510415 5510415 C - OR52D1 Frame_Shift_Del p.F162Sfs*5 0.29 TCGA-AD-5900-01 11 5529332 5529332 A G UBQLN3 Missense_Mutation p.L486P 0.27 tolerated_low_confidence(0.12) benign(0.036) TCGA-AD-5900-01 11 5537319 5537319 G A UBQLNL Missense_Mutation p.T118M 0.30 deleterious(0.03) benign(0.185) TCGA-AD-5900-01 11 55735676 55735676 A G OR10AG1 Silent p.C88C 0.31 TCGA-AD-5900-01 11 57185235 57185235 G - SLC43A3 Frame_Shift_Del p.N220Tfs*69 0.25 TCGA-AD-5900-01 11 57259277 57259277 G T SLC43A1 Silent p.T310T 0.09 TCGA-AD-5900-01 11 57449992 57449992 T C ZDHHC5 Missense_Mutation p.M68T 0.23 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 11 58126243 58126243 G A OR5B17 Silent p.F100F 0.05 TCGA-AD-5900-01 11 58980257 58980257 C T MPEG1 Missense_Mutation p.E28K 0.28 tolerated(0.26) benign(0.001) TCGA-AD-5900-01 11 59610509 59610509 G A GIF Missense_Mutation p.A121V 0.07 tolerated(0.26) benign(0.001) TCGA-AD-5900-01 11 60274227 60274227 G A MS4A12 Silent p.T205T 0.10 TCGA-AD-5900-01 11 60701157 60701157 G A TMEM132A Silent p.E501E 0.24 TCGA-AD-5900-01 11 60777255 60777255 T C CD6 Silent p.N331N 0.26 TCGA-AD-5900-01 11 613300 613300 G A IRF7 Silent p.G394G 0.23 TCGA-AD-5900-01 11 62286114 62286114 G A AHNAK Silent p.L5259L 0.21 TCGA-AD-5900-01 11 6260329 6260330 - A CNGA4 5'UTR 0.33 TCGA-AD-5900-01 11 62678127 62678127 G A CHRM1 Missense_Mutation p.A149V 0.25 deleterious(0) possibly_damaging(0.627) TCGA-AD-5900-01 11 63673557 63673605 TAGAAATCTGTCTTTCAGGTTTGCCAGAAGGTAGGCGTTGAGCCCGCTG AGAAATCTGTCTTTCAGGTTTGCCAGAAGGTAGGCGTTGAGCCCGC MARK2 Splice_Site p.X645_splice 0.12 TCGA-AD-5900-01 11 63963153 63963153 C T STIP1 Silent p.S180S 0.25 TCGA-AD-5900-01 11 64055631 64055631 C - GPR137 Frame_Shift_Del p.Q303Rfs*21 0.46 TCGA-AD-5900-01 11 64374536 64374536 G A NRXN2 3'UTR 0.25 TCGA-AD-5900-01 11 64666145 64666145 G A ATG2A Missense_Mutation p.T1545M 0.24 deleterious(0.01) probably_damaging(0.943) TCGA-AD-5900-01 11 65375277 65375277 C T MAP3K11 Silent p.A360A 0.28 TCGA-AD-5900-01 11 65655588 65655588 G A FIBP Missense_Mutation p.A34V 0.38 tolerated(0.33) benign(0.038) TCGA-AD-5900-01 11 65792843 65792843 G A CATSPER1 Silent p.H336H 0.23 TCGA-AD-5900-01 11 6622593 6622593 C T RRP8 Missense_Mutation p.A235T 0.08 tolerated(0.06) possibly_damaging(0.653) TCGA-AD-5900-01 11 6645123 6645123 A G DCHS1 Missense_Mutation p.V2595A 0.35 tolerated(0.2) benign(0.145) TCGA-AD-5900-01 11 66613420 66613420 C T RCE1 Missense_Mutation p.R282W 0.32 tolerated(0.19) benign(0) TCGA-AD-5900-01 11 66616463 66616463 C T PC Silent p.V1148V 0.26 TCGA-AD-5900-01 11 66617758 66617758 C T PC Missense_Mutation p.G884D 0.22 deleterious(0.01) possibly_damaging(0.906) TCGA-AD-5900-01 11 66813326 66813326 C T SYT12 Missense_Mutation p.S357L 0.20 deleterious(0) probably_damaging(0.924) TCGA-AD-5900-01 11 67207812 67207812 G A CORO1B Silent p.C285C 0.23 TCGA-AD-5900-01 11 67256797 67256797 C - AIP Frame_Shift_Del p.L115Wfs*41 0.40 TCGA-AD-5900-01 11 67818115 67818115 G A TCIRG1 Missense_Mutation p.A800T 0.11 tolerated(0.28) probably_damaging(0.98) TCGA-AD-5900-01 11 68334504 68334504 G - PPP6R3 Frame_Shift_Del p.G334Vfs*12 0.22 TCGA-AD-5900-01 11 71155908 71155908 G T DHCR7 Missense_Mutation p.R31S 0.05 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 11 71948432 71948432 G A INPPL1 Silent p.L1048L 0.27 TCGA-AD-5900-01 11 72114055 72114055 A C CLPB Missense_Mutation p.L166R 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-AD-5900-01 11 72613652 72613652 A - FCHSD2 Frame_Shift_Del p.L287Cfs*26 0.17 TCGA-AD-5900-01 11 73387459 73387459 G T RAB6A 3'UTR 0.06 TCGA-AD-5900-01 11 75152264 75152264 C T GDPD5 Missense_Mutation p.V473I 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-AD-5900-01 11 75280165 75280165 T C SERPINH1 Silent p.A301A 0.24 TCGA-AD-5900-01 11 76507398 76507398 G A TSKU Silent p.A246A 0.28 TCGA-AD-5900-01 11 76795941 76795941 G A CAPN5 Silent p.S3S 0.29 TCGA-AD-5900-01 11 76893642 76893642 C T MYO7A Silent p.G1094G 0.30 TCGA-AD-5900-01 11 77383147 77383147 G A RSF1 Nonsense_Mutation p.R1231* 0.26 TCGA-AD-5900-01 11 77531708 77531708 C T RSF1 Missense_Mutation p.G18D 0.54 tolerated(0.07) probably_damaging(0.994) TCGA-AD-5900-01 11 78369348 78369348 G - TENM4 Frame_Shift_Del p.R2689Gfs*41 0.32 TCGA-AD-5900-01 11 8014547 8014547 G A EIF3F Missense_Mutation p.R210H 0.05 tolerated(0.24) benign(0.028) TCGA-AD-5900-01 11 82644592 82644592 A G C11orf82 Missense_Mutation p.S738G 0.23 deleterious(0.03) benign(0.146) TCGA-AD-5900-01 11 8662091 8662091 G C TRIM66 Missense_Mutation p.H464D 0.31 deleterious(0.02) benign(0.227) TCGA-AD-5900-01 11 86749134 86749134 G A TMEM135 Missense_Mutation p.G16D 0.21 tolerated(0.08) probably_damaging(0.915) TCGA-AD-5900-01 11 86947694 86947694 C T TMEM135 Silent p.C159C 0.05 TCGA-AD-5900-01 11 8739330 8739330 C T ST5 Missense_Mutation p.M529I 0.28 tolerated(0.34) benign(0.328) TCGA-AD-5900-01 11 8751554 8751554 G - ST5 Frame_Shift_Del p.P428Rfs*56 0.24 TCGA-AD-5900-01 11 88059450 88059450 G A CTSC Intron 0.33 TCGA-AD-5900-01 11 89867856 89867856 G A NAALAD2 5'UTR 0.33 TCGA-AD-5900-01 11 9164305 9164305 G A DENND5A Missense_Mutation p.R1159W 0.35 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 11 9215204 9215204 G A DENND5A Missense_Mutation p.A325V 0.30 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 11 92577819 92577819 C T FAT3 Silent p.H3762H 0.21 TCGA-AD-5900-01 12 100042240 100042240 C T FAM71C Silent p.D96D 0.48 TCGA-AD-5900-01 12 100709484 100709484 C A SCYL2 Missense_Mutation p.P415H 0.08 deleterious(0.02) possibly_damaging(0.649) TCGA-AD-5900-01 12 100751193 100751193 C A SLC17A8 Silent p.T8T 0.40 TCGA-AD-5900-01 12 10151708 10151708 G A CLEC1B 5'UTR 0.04 TCGA-AD-5900-01 12 10165474 10165474 G T CLEC12B Missense_Mutation p.G61V 0.48 deleterious(0.02) probably_damaging(0.963) TCGA-AD-5900-01 12 101731937 101731937 T C UTP20 Silent p.S1250S 0.20 TCGA-AD-5900-01 12 103310881 103310881 C T PAH Missense_Mutation p.G10S 0.37 tolerated(0.83) benign(0.001) TCGA-AD-5900-01 12 104720173 104720174 - A TXNRD1 Frame_Shift_Ins p.T454Nfs*8 0.31 TCGA-AD-5900-01 12 107371846 107371846 T G MTERFD3 Missense_Mutation p.N216T 0.18 deleterious(0) probably_damaging(0.935) TCGA-AD-5900-01 12 108929170 108929170 G A SART3 Silent p.Y507Y 0.06 TCGA-AD-5900-01 12 109674991 109674991 C T ACACB Missense_Mutation p.R1490C 0.24 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 12 109893941 109893941 A G KCTD10 Silent p.T235T 0.42 TCGA-AD-5900-01 12 109959089 109959089 T C UBE3B Missense_Mutation p.I738T 0.06 tolerated(1) benign(0.036) TCGA-AD-5900-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.51 TCGA-AD-5900-01 12 110765398 110765398 T C ATP2A2 Missense_Mutation p.V224A 0.21 tolerated(0.11) benign(0.008) TCGA-AD-5900-01 12 110826370 110826370 G A ANAPC7 Missense_Mutation p.T190I 0.19 deleterious(0) possibly_damaging(0.806) TCGA-AD-5900-01 12 112369335 112369335 A G TMEM116 3'UTR 0.43 TCGA-AD-5900-01 12 112924356 112924356 C T PTPN11 Silent p.G434G 0.41 TCGA-AD-5900-01 12 113549952 113549952 C T RASAL1 Missense_Mutation p.R438H 0.27 deleterious(0) probably_damaging(0.938) TCGA-AD-5900-01 12 113573324 113573324 A G RASAL1 5'UTR 0.37 TCGA-AD-5900-01 12 113796584 113796584 G A PLBD2 Missense_Mutation p.R60H 0.67 tolerated(0.09) benign(0.017) TCGA-AD-5900-01 12 11420684 11420684 G T PRB3 Missense_Mutation p.P167T 0.06 tolerated(0.09) unknown(0) TCGA-AD-5900-01 12 119617377 119617377 C - HSPB8 Frame_Shift_Del p.P89Hfs*12 0.40 TCGA-AD-5900-01 12 120139749 120139749 T C CIT Silent p.S1773S 0.18 TCGA-AD-5900-01 12 12037509 12037509 G T ETV6 Missense_Mutation p.W380C 0.37 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 12 120509459 120509459 C T CCDC64 Missense_Mutation p.R315C 0.12 deleterious(0) probably_damaging(0.949) TCGA-AD-5900-01 12 120572449 120572449 G A GCN1L1 Missense_Mutation p.R2364C 0.46 possibly_damaging(0.717) TCGA-AD-5900-01 12 120597971 120597971 G A GCN1L1 Missense_Mutation p.A842V 0.07 benign(0.116) TCGA-AD-5900-01 12 120876032 120876032 G T AL021546.6 Missense_Mutation p.A12S 0.11 tolerated_low_confidence(0.3) benign(0.144) TCGA-AD-5900-01 12 121861407 121861407 C - RNF34 3'UTR 0.42 TCGA-AD-5900-01 12 122252481 122252481 C T SETD1B Missense_Mutation p.T787M 0.34 unknown(0) TCGA-AD-5900-01 12 122614650 122614650 C T MLXIP Missense_Mutation p.R301W 0.23 deleterious(0) probably_damaging(0.995) TCGA-AD-5900-01 12 122748228 122748228 T - VPS33A Frame_Shift_Del p.M63Cfs*14 0.31 TCGA-AD-5900-01 12 122958629 122958629 G A ZCCHC8 Silent p.D513D 0.46 TCGA-AD-5900-01 12 12312011 12312011 G A LRP6 Missense_Mutation p.T848M 0.23 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 12 124810909 124810909 G A NCOR2 Silent p.G2397G 0.24 TCGA-AD-5900-01 12 125302137 125302137 G A SCARB1 Silent p.G81G 0.09 TCGA-AD-5900-01 12 129190513 129190513 C T TMEM132C Silent p.R1000R 0.33 TCGA-AD-5900-01 12 130015642 130015642 G A TMEM132D Silent p.V359V 0.08 TCGA-AD-5900-01 12 130649721 130649721 G - FZD10 3'UTR 0.14 TCGA-AD-5900-01 12 132284046 132284046 G A SFSWAP 3'UTR 0.42 TCGA-AD-5900-01 12 132624213 132624213 C T DDX51 Silent p.E647E 0.27 TCGA-AD-5900-01 12 132624667 132624668 - G DDX51 Frame_Shift_Ins p.Q584Pfs*40 0.21 TCGA-AD-5900-01 12 132685783 132685783 G A GALNT9 Silent p.D63D 0.20 TCGA-AD-5900-01 12 1992123 1992123 G A CACNA2D4 Silent p.N465N 0.45 TCGA-AD-5900-01 12 2016630 2016630 T C CACNA2D4 Missense_Mutation p.T253A 0.24 deleterious(0.03) benign(0.183) TCGA-AD-5900-01 12 21472310 21472310 G A SLCO1A2 Intron 0.19 TCGA-AD-5900-01 12 21644545 21644545 A C RECQL Missense_Mutation p.V41G 0.20 tolerated(0.37) benign(0.028) TCGA-AD-5900-01 12 21926614 21926614 C T KCNJ8 5'UTR 0.33 TCGA-AD-5900-01 12 24048900 24048900 C T SOX5 Missense_Mutation p.V33M 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.736) TCGA-AD-5900-01 12 24736581 24736581 C A LINC00477 RNA 0.17 TCGA-AD-5900-01 12 250438 250438 C T IQSEC3 Missense_Mutation p.R714C 0.21 deleterious(0) probably_damaging(0.993) TCGA-AD-5900-01 12 25054767 25054767 T G BCAT1 Missense_Mutation p.E32A 0.17 tolerated(0.4) benign(0.003) TCGA-AD-5900-01 12 25356893 25356893 G T LYRM5 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.584) TCGA-AD-5900-01 12 2659130 2659130 C T CACNA1C Missense_Mutation p.T471I 0.47 deleterious(0.04) benign(0.023) TCGA-AD-5900-01 12 27133506 27133506 C T TM7SF3 Silent p.K343K 0.49 TCGA-AD-5900-01 12 27944771 27944771 G A KLHL42 Missense_Mutation p.A335T 0.50 tolerated(0.63) benign(0.077) TCGA-AD-5900-01 12 34179976 34179976 T - ALG10 3'UTR 0.21 TCGA-AD-5900-01 12 40651060 40651060 A - LRRK2 Frame_Shift_Del p.I435Yfs*9 0.30 TCGA-AD-5900-01 12 40657647 40657647 A - LRRK2 Frame_Shift_Del p.K535Nfs*13 0.17 TCGA-AD-5900-01 12 41967774 41967774 C T PDZRN4 3'UTR 0.21 TCGA-AD-5900-01 12 46320890 46320890 C T SCAF11 Missense_Mutation p.R865Q 0.21 tolerated(0.18) benign(0.007) TCGA-AD-5900-01 12 46582766 46582766 T C SLC38A1 Missense_Mutation p.D484G 0.09 tolerated(0.46) benign(0) TCGA-AD-5900-01 12 47471493 47471493 C A AMIGO2 Missense_Mutation p.Q431H 0.04 deleterious(0.04) benign(0.309) TCGA-AD-5900-01 12 48134933 48134933 A G RAPGEF3 Intron 0.62 TCGA-AD-5900-01 12 48722941 48722941 G A H1FNT 5'UTR 0.18 TCGA-AD-5900-01 12 4920103 4920103 T C KCNA6 Missense_Mutation p.I299T 0.22 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 12 4920761 4920761 G T KCNA6 Silent p.R518R 0.22 TCGA-AD-5900-01 12 49425613 49425613 G A KMT2D Missense_Mutation p.P4292L 0.13 unknown(0) TCGA-AD-5900-01 12 49425745 49425745 G A KMT2D Missense_Mutation p.T4248I 0.48 unknown(0) TCGA-AD-5900-01 12 49446044 49446044 C T KMT2D Silent p.L474L 0.07 TCGA-AD-5900-01 12 49484986 49484986 G A DHH Missense_Mutation p.R164C 0.26 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 12 49689992 49689992 G A PRPH Missense_Mutation p.A193T 0.10 deleterious(0.02) possibly_damaging(0.899) TCGA-AD-5900-01 12 49854700 49854700 G A SPATS2 5'UTR 0.07 TCGA-AD-5900-01 12 49937796 49937796 C A KCNH3 Missense_Mutation p.L308M 0.18 deleterious(0.02) benign(0.439) TCGA-AD-5900-01 12 49959352 49959352 C T MCRS1 Missense_Mutation p.R96H 0.22 tolerated(0.08) probably_damaging(0.909) TCGA-AD-5900-01 12 51213668 51213668 T - ATF1 3'UTR 0.19 TCGA-AD-5900-01 12 52771810 52771810 C T KRT84 3'UTR 0.24 TCGA-AD-5900-01 12 52826894 52826894 A G KRT75 Missense_Mutation p.I214T 0.09 deleterious(0.02) benign(0.196) TCGA-AD-5900-01 12 53012246 53012246 G A KRT73 Silent p.S21S 0.28 TCGA-AD-5900-01 12 53433048 53433048 G T EIF4B Missense_Mutation p.A535S 0.06 tolerated_low_confidence(0.74) benign(0.053) TCGA-AD-5900-01 12 53457158 53457158 G A TENC1 Missense_Mutation p.V1350M 0.23 deleterious(0) benign(0.035) TCGA-AD-5900-01 12 53682437 53682437 G T ESPL1 Missense_Mutation p.K1554N 0.39 tolerated(0.38) benign(0.045) TCGA-AD-5900-01 12 54109748 54109748 C T CALCOCO1 Silent p.G363G 0.46 TCGA-AD-5900-01 12 54812950 54812950 G A ITGA5 Silent p.H11H 0.39 TCGA-AD-5900-01 12 55715217 55715217 A G OR6C1 Silent p.S278S 0.38 TCGA-AD-5900-01 12 56094842 56094842 C T ITGA7 Missense_Mutation p.A171T 0.41 tolerated(1) benign(0.007) TCGA-AD-5900-01 12 56563642 56563642 G A SMARCC2 Silent p.S791S 0.21 TCGA-AD-5900-01 12 56663030 56663030 G A COQ10A Missense_Mutation p.V157I 0.21 tolerated(0.1) possibly_damaging(0.735) TCGA-AD-5900-01 12 56666942 56666942 C A CS Missense_Mutation p.G443C 0.05 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 12 56995610 56995610 T C BAZ2A Missense_Mutation p.Q1266R 0.25 deleterious(0) probably_damaging(0.978) TCGA-AD-5900-01 12 57114642 57114642 T C NACA Silent p.Q224Q 0.38 TCGA-AD-5900-01 12 57390368 57390368 G A GPR182 3'UTR 0.19 TCGA-AD-5900-01 12 57390433 57390433 A - GPR182 3'UTR 0.15 TCGA-AD-5900-01 12 57598195 57598195 C T LRP1 Missense_Mutation p.R3652W 0.12 probably_damaging(0.993) TCGA-AD-5900-01 12 58121032 58121032 C T AGAP2-AS1 Missense_Mutation p.T86M 0.29 possibly_damaging(0.897) TCGA-AD-5900-01 12 58165785 58165785 T C METTL1 Missense_Mutation p.N28D 0.26 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 12 58207099 58207099 G A AVIL Silent p.D83D 0.21 TCGA-AD-5900-01 12 5941725 5941725 G A ANO2 Silent p.S222S 0.25 TCGA-AD-5900-01 12 62148777 62148777 C T FAM19A2 Silent p.E45E 0.06 TCGA-AD-5900-01 12 63544065 63544065 C T AVPR1A Silent p.P184P 0.17 TCGA-AD-5900-01 12 64436633 64436633 G A SRGAP1 Missense_Mutation p.A185T 0.38 deleterious(0) probably_damaging(0.971) TCGA-AD-5900-01 12 6672287 6672287 C T NOP2 Missense_Mutation p.R346Q 0.33 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 12 66742697 66742697 C T GRIP1 3'UTR 0.27 TCGA-AD-5900-01 12 66856834 66856834 G A GRIP1 Silent p.I304I 0.45 TCGA-AD-5900-01 12 6692036 6692036 G A CHD4 Missense_Mutation p.A1405V 0.41 deleterious(0.01) probably_damaging(0.918) TCGA-AD-5900-01 12 68054726 68054726 A G DYRK2 3'UTR 0.08 TCGA-AD-5900-01 12 6969543 6969543 G A USP5 Missense_Mutation p.G411D 0.23 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 12 70983938 70983938 G - PTPRB Frame_Shift_Del p.P619Lfs*55 0.08 TCGA-AD-5900-01 12 75601437 75601437 G A KCNC2 Silent p.G109G 0.40 TCGA-AD-5900-01 12 77449690 77449690 T C E2F7 Missense_Mutation p.K105R 0.40 tolerated(0.27) probably_damaging(0.998) TCGA-AD-5900-01 12 78443855 78443855 T C NAV3 Silent p.S702S 0.05 TCGA-AD-5900-01 12 78593213 78593213 G A NAV3 Missense_Mutation p.R2184H 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-AD-5900-01 12 80648837 80648837 G A OTOGL Missense_Mutation p.G478S 0.20 deleterious(0.01) probably_damaging(1) TCGA-AD-5900-01 12 80764438 80764438 G C OTOGL Missense_Mutation p.C2226S 0.26 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 12 8078532 8078532 A G SLC2A3 Missense_Mutation p.S292P 0.16 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 12 81111287 81111287 C T MYF5 Missense_Mutation p.P149S 0.39 tolerated(0.25) possibly_damaging(0.741) TCGA-AD-5900-01 12 88566516 88566517 - A TMTC3 Frame_Shift_Ins p.S400Kfs*4 0.30 TCGA-AD-5900-01 12 89860564 89860564 T C POC1B Missense_Mutation p.K339E 0.25 tolerated(0.09) benign(0.184) TCGA-AD-5900-01 12 93100751 93100751 C T C12orf74 Missense_Mutation p.A115V 0.42 tolerated(0.08) benign(0.046) TCGA-AD-5900-01 12 9312608 9312608 C T PZP Silent p.Q1021Q 0.43 TCGA-AD-5900-01 12 93226554 93226554 C T EEA1 Missense_Mutation p.V330M 0.03 tolerated(0.21) benign(0.007) TCGA-AD-5900-01 12 95566508 95566508 G T FGD6 Silent p.S818S 0.45 TCGA-AD-5900-01 12 96641444 96641444 G A ELK3 Missense_Mutation p.G312S 0.14 tolerated(1) probably_damaging(0.974) TCGA-AD-5900-01 12 9750664 9750664 C T KLRB1 Missense_Mutation p.G170S 0.05 deleterious(0.03) possibly_damaging(0.9) TCGA-AD-5900-01 13 101184642 101184642 G A GGACT Silent p.Y68Y 0.30 TCGA-AD-5900-01 13 103297360 103297360 G A TPP2 Splice_Site p.X798_splice 0.50 TCGA-AD-5900-01 13 108885494 108885494 G A ABHD13 3'UTR 0.55 TCGA-AD-5900-01 13 20277228 20277228 A - PSPC1 3'UTR 0.32 TCGA-AD-5900-01 13 20796809 20796809 G A GJB6 3'UTR 0.08 TCGA-AD-5900-01 13 25823501 25823501 T G MTMR6 Missense_Mutation p.N579H 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.533) TCGA-AD-5900-01 13 27333266 27333266 C T GPR12 Silent p.L233L 0.49 TCGA-AD-5900-01 13 29274888 29274888 T - SLC46A3 3'UTR 0.18 TCGA-AD-5900-01 13 32721476 32721477 - T FRY Frame_Shift_Ins p.Y414Lfs*6 0.22 TCGA-AD-5900-01 13 41523943 41523943 T - ELF1 Frame_Shift_Del p.G177Efs*20 0.26 TCGA-AD-5900-01 13 43934081 43934081 G A ENOX1 Silent p.C165C 0.27 TCGA-AD-5900-01 13 45147569 45147569 T G TSC22D1 Missense_Mutation p.N881T 0.05 tolerated(0.66) benign(0.297) TCGA-AD-5900-01 13 49781431 49781431 G A FNDC3A Missense_Mutation p.R1166Q 0.08 tolerated(0.66) benign(0.004) TCGA-AD-5900-01 13 49795055 49795055 C T MLNR Silent p.T194T 0.65 TCGA-AD-5900-01 13 50588563 50588563 G C TRIM13 3'Flank 0.07 TCGA-AD-5900-01 13 51544124 51544124 T C RNASEH2B 3'UTR 0.50 TCGA-AD-5900-01 13 52646148 52646148 T C NEK5 Missense_Mutation p.Y619C 0.55 tolerated(0.17) benign(0.003) TCGA-AD-5900-01 13 53029673 53029673 C - CKAP2 5'UTR 0.12 TCGA-AD-5900-01 13 61141715 61141715 G A TDRD3 Silent p.Q725Q 0.54 TCGA-AD-5900-01 13 78320811 78320811 G A SLAIN1 Missense_Mutation p.R196H 0.22 deleterious(0.02) unknown(0) TCGA-AD-5900-01 13 96086240 96086240 C T CLDN10 Silent p.C51C 0.48 TCGA-AD-5900-01 13 99378680 99378680 G T SLC15A1 Missense_Mutation p.S15R 0.44 deleterious(0) probably_damaging(0.923) TCGA-AD-5900-01 14 100187646 100187646 C T CYP46A1 Nonsense_Mutation p.Q351* 0.27 TCGA-AD-5900-01 14 100563994 100563994 A G EVL Silent p.G119G 0.22 TCGA-AD-5900-01 14 100593073 100593073 G A EVL Missense_Mutation p.R151H 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-AD-5900-01 14 101347507 101347507 G - RTL1 Frame_Shift_Del p.Q1207Rfs*77 0.11 TCGA-AD-5900-01 14 102029613 102029613 G - DIO3 3'UTR 0.30 TCGA-AD-5900-01 14 102548631 102548631 T C HSP90AA1 Missense_Mutation p.I758V 0.08 deleterious_low_confidence(0.04) unknown(0) TCGA-AD-5900-01 14 102793062 102793062 C T ZNF839 Silent p.P343P 0.33 TCGA-AD-5900-01 14 102808333 102808333 C T ZNF839 Silent p.G867G 0.24 TCGA-AD-5900-01 14 103371834 103371834 T - TRAF3 Frame_Shift_Del p.F475Lfs*20 0.25 TCGA-AD-5900-01 14 103593922 103593922 C T TNFAIP2 Silent p.R272R 0.50 TCGA-AD-5900-01 14 103804757 103804759 CAC - EIF5 In_Frame_Del p.P185del 0.26 TCGA-AD-5900-01 14 105415998 105415998 G A AHNAK2 Silent p.G1930G 0.21 TCGA-AD-5900-01 14 105420827 105420827 G A AHNAK2 Missense_Mutation p.R321W 0.33 probably_damaging(0.928) TCGA-AD-5900-01 14 105860986 105860986 G A PACS2 Missense_Mutation p.G898R 0.33 tolerated(0.08) probably_damaging(1) TCGA-AD-5900-01 14 106091127 106091127 G A IGHG4 Nonsense_Mutation p.R224* 0.18 TCGA-AD-5900-01 14 106573502 106573502 C A IGHV3-11 Nonsense_Mutation p.G28* 0.16 TCGA-AD-5900-01 14 21811356 21811358 AGG - RPGRIP1 In_Frame_Del p.G1168del 0.28 TCGA-AD-5900-01 14 21883133 21883133 G A CHD8 Missense_Mutation p.T663I 0.26 tolerated(0.62) benign(0.14) TCGA-AD-5900-01 14 23248121 23248121 G T SLC7A7 Silent p.S217S 0.26 TCGA-AD-5900-01 14 23530543 23530543 G A ACIN1 Missense_Mutation p.R1188C 0.30 probably_damaging(0.993) TCGA-AD-5900-01 14 23623517 23623517 T A SLC7A8 Intron 0.22 TCGA-AD-5900-01 14 23855576 23855576 C T MYH6 Missense_Mutation p.R1636H 0.25 deleterious(0.04) possibly_damaging(0.458) TCGA-AD-5900-01 14 24530776 24530776 A G LRRC16B Missense_Mutation p.H792R 0.21 tolerated(1) benign(0.026) TCGA-AD-5900-01 14 24552035 24552036 - G NRL Frame_Shift_Ins p.L8Pfs*8 0.15 TCGA-AD-5900-01 14 24601902 24601902 T C FITM1 Missense_Mutation p.V250A 0.22 tolerated(0.08) possibly_damaging(0.6) TCGA-AD-5900-01 14 24608203 24608203 C - EMC9 3'UTR 0.28 TCGA-AD-5900-01 14 24718584 24718586 AGA - TGM1 In_Frame_Del p.F796del 0.29 TCGA-AD-5900-01 14 24886342 24886342 A GG NYNRIN Frame_Shift_Ins p.E1796Gfs*11 0.31 TCGA-AD-5900-01 14 27066542 27066543 GG - NOVA1 Frame_Shift_Del p.P34* 0.18 TCGA-AD-5900-01 14 28733757 28733757 G A BNIP3P1 RNA 0.32 TCGA-AD-5900-01 14 30068296 30068297 - T PRKD1 Frame_Shift_Ins p.N701Kfs*6 0.20 TCGA-AD-5900-01 14 30102142 30102142 T C PRKD1 Missense_Mutation p.H442R 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-AD-5900-01 14 33293642 33293642 C T AKAP6 Missense_Mutation p.A2208V 0.22 tolerated_low_confidence(0.42) benign(0.004) TCGA-AD-5900-01 14 35002655 35002655 C A EAPP Missense_Mutation p.R116I 0.07 tolerated(0.05) benign(0.001) TCGA-AD-5900-01 14 35331475 35331475 A G BAZ1A Missense_Mutation p.V56A 0.28 deleterious(0) benign(0.418) TCGA-AD-5900-01 14 35742950 35742950 T - KIAA0391 3'UTR 0.38 TCGA-AD-5900-01 14 36004783 36004783 G A INSM2 Missense_Mutation p.R442H 0.23 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 14 36987039 36987039 G A NKX2-1 Missense_Mutation p.S217L 0.23 deleterious(0) possibly_damaging(0.794) TCGA-AD-5900-01 14 38679489 38679489 C T SSTR1 Nonsense_Mutation p.Q299* 0.27 TCGA-AD-5900-01 14 38679498 38679498 G A SSTR1 Missense_Mutation p.A302T 0.26 tolerated(0.39) benign(0.009) TCGA-AD-5900-01 14 42355887 42355887 G T LRFN5 Missense_Mutation p.C20F 0.23 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 14 50824776 50824776 C - CDKL1 Intron 0.32 TCGA-AD-5900-01 14 52186856 52186856 G A FRMD6 Missense_Mutation p.G370R 0.29 deleterious(0.05) probably_damaging(1) TCGA-AD-5900-01 14 54416913 54416913 G A BMP4 Missense_Mutation p.A355V 0.27 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 14 55604937 55604937 G A LGALS3 Missense_Mutation p.G65R 0.24 deleterious(0) unknown(0) TCGA-AD-5900-01 14 58599960 58599961 TC - C14orf37 Frame_Shift_Del p.D490Qfs*5 0.27 TCGA-AD-5900-01 14 65237803 65237803 A G SPTB Silent p.Y1866Y 0.28 TCGA-AD-5900-01 14 65271700 65271700 C T SPTB Missense_Mutation p.R86H 0.28 deleterious(0.01) probably_damaging(0.939) TCGA-AD-5900-01 14 66028403 66028403 G A FUT8 Missense_Mutation p.R41Q 0.27 tolerated(0.37) benign(0.012) TCGA-AD-5900-01 14 68038954 68038954 G A PLEKHH1 Missense_Mutation p.R563H 0.39 deleterious(0) benign(0.173) TCGA-AD-5900-01 14 71540387 71540387 C T PCNX Nonsense_Mutation p.R1660* 0.26 TCGA-AD-5900-01 14 73141016 73141016 C - DPF3 Frame_Shift_Del p.G268Afs*4 0.31 TCGA-AD-5900-01 14 73412690 73412690 G A DCAF4 Silent p.T211T 0.09 TCGA-AD-5900-01 14 74196580 74196580 C T ELMSAN1 Missense_Mutation p.A620T 0.24 tolerated(0.06) benign(0.009) TCGA-AD-5900-01 14 74413181 74413182 - A FAM161B Frame_Shift_Ins p.S124Ffs*2 0.21 TCGA-AD-5900-01 14 75601555 75601555 G T TMED10 3'UTR 0.11 TCGA-AD-5900-01 14 76045429 76045429 C T FLVCR2 Silent p.S38S 0.09 TCGA-AD-5900-01 14 77808140 77808141 AG - TMED8 Frame_Shift_Del p.Y318Lfs*79 0.36 TCGA-AD-5900-01 14 77942189 77942189 C A ISM2 Missense_Mutation p.A489S 0.32 deleterious(0.02) benign(0.037) TCGA-AD-5900-01 14 81557428 81557428 T C TSHR Silent p.T136T 0.19 TCGA-AD-5900-01 14 86088863 86088863 G A FLRT2 Silent p.R335R 0.26 TCGA-AD-5900-01 14 91763818 91763818 T C CCDC88C Missense_Mutation p.H1266R 0.24 tolerated(0.56) benign(0.001) TCGA-AD-5900-01 14 91942289 91942289 G A SMEK1 Nonsense_Mutation p.R378* 0.25 TCGA-AD-5900-01 14 92549503 92549503 A T ATXN3 Missense_Mutation p.I192N 0.25 tolerated(0.1) benign(0.012) TCGA-AD-5900-01 14 93170567 93170567 C T LGMN 3'UTR 0.13 TCGA-AD-5900-01 14 94756360 94756360 C T SERPINA10 Missense_Mutation p.V191M 0.29 tolerated(0.07) probably_damaging(0.952) TCGA-AD-5900-01 14 95571517 95571517 G A DICER1 Missense_Mutation p.L1054F 0.28 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 14 96129941 96129942 GT - TCL6 RNA 0.20 TCGA-AD-5900-01 14 96706806 96706806 C - BDKRB2 Frame_Shift_Del p.Q49Kfs*25 0.08 TCGA-AD-5900-01 14 96924532 96924532 G A AK7 Missense_Mutation p.S447N 0.34 tolerated(0.37) benign(0.008) TCGA-AD-5900-01 14 99959173 99959173 C T CCNK Silent p.G53G 0.28 TCGA-AD-5900-01 15 100332611 100332612 - G AC090825.1 3'Flank 0.24 TCGA-AD-5900-01 15 101775437 101775437 C - CHSY1 Frame_Shift_Del p.P223Lfs*3 0.30 TCGA-AD-5900-01 15 25925003 25925003 G A ATP10A Missense_Mutation p.R1329C 0.43 tolerated(0.23) benign(0.002) TCGA-AD-5900-01 15 27772701 27772701 G A GABRG3 Missense_Mutation p.A330T 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-AD-5900-01 15 29429272 29429273 - G FAM189A1 Frame_Shift_Ins p.E253Rfs*9 0.28 TCGA-AD-5900-01 15 31206148 31206148 C T FAN1 Silent p.T555T 0.33 TCGA-AD-5900-01 15 31221463 31221463 G A FAN1 Missense_Mutation p.E884K 0.29 deleterious(0.03) benign(0.346) TCGA-AD-5900-01 15 31221469 31221469 A G FAN1 Missense_Mutation p.R886G 0.09 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 15 31338437 31338437 C T TRPM1 Splice_Site p.X606_splice 0.25 TCGA-AD-5900-01 15 34530551 34530551 T - SLC12A6 Frame_Shift_Del p.N895Tfs*36 0.25 TCGA-AD-5900-01 15 35086968 35086968 G A ACTC1 Silent p.N14N 0.32 TCGA-AD-5900-01 15 37390309 37390309 G - MEIS2 Frame_Shift_Del p.P35Rfs*5 0.27 TCGA-AD-5900-01 15 39546861 39546862 - A C15orf54 3'UTR 0.19 TCGA-AD-5900-01 15 41102942 41102944 AGG - ZFYVE19 In_Frame_Del p.G274del 0.27 TCGA-AD-5900-01 15 41624774 41624774 C T OIP5 5'UTR 0.25 TCGA-AD-5900-01 15 42059545 42059545 G A MGA 3'UTR 0.47 TCGA-AD-5900-01 15 43569140 43569140 G A TGM7 Silent p.T631T 0.28 TCGA-AD-5900-01 15 45895358 45895358 T C BLOC1S6 Silent p.C95C 0.28 TCGA-AD-5900-01 15 48593523 48593523 A C SLC12A1 Missense_Mutation p.Q1036H 0.31 tolerated(0.28) benign(0.181) TCGA-AD-5900-01 15 49171338 49171338 A - EID1 3'UTR 0.26 TCGA-AD-5900-01 15 49509454 49509454 T C GALK2 Silent p.A70A 0.26 TCGA-AD-5900-01 15 50528150 50528150 C T SLC27A2 Missense_Mutation p.R574C 0.22 tolerated(0.23) benign(0.001) TCGA-AD-5900-01 15 50751267 50751268 - A USP8 Frame_Shift_Ins p.R138Kfs*14 0.25 TCGA-AD-5900-01 15 52017269 52017269 A C LYSMD2 Missense_Mutation p.F108C 0.09 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 15 52536572 52536572 G A MYO5C Missense_Mutation p.R791W 0.26 deleterious(0) probably_damaging(0.983) TCGA-AD-5900-01 15 56155179 56155179 A G NEDD4 Silent p.D549D 0.25 TCGA-AD-5900-01 15 59499648 59499648 T A LDHAL6B Missense_Mutation p.I170N 0.27 deleterious(0) probably_damaging(0.968) TCGA-AD-5900-01 15 59911378 59911378 A C GCNT3 Missense_Mutation p.K314T 0.27 tolerated(0.54) benign(0.05) TCGA-AD-5900-01 15 60656680 60656680 C A ANXA2 Missense_Mutation p.S82I 0.30 deleterious(0) possibly_damaging(0.728) TCGA-AD-5900-01 15 62221851 62221851 A G VPS13C Silent p.L2045L 0.27 TCGA-AD-5900-01 15 63040633 63040633 G A TLN2 Missense_Mutation p.R1370Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-AD-5900-01 15 63353066 63353066 A G TPM1 Splice_Site p.X165_splice 0.21 TCGA-AD-5900-01 15 63986192 63986192 C T HERC1 Missense_Mutation p.S1882N 0.30 benign(0) TCGA-AD-5900-01 15 65110228 65110228 C T PIF1 Missense_Mutation p.V531M 0.31 tolerated(0.06) possibly_damaging(0.793) TCGA-AD-5900-01 15 65771354 65771354 A - DPP8 Frame_Shift_Del p.Q458Kfs*29 0.20 TCGA-AD-5900-01 15 66190347 66190347 A G MEGF11 Silent p.H1020H 0.07 TCGA-AD-5900-01 15 66853377 66853377 G A LCTL Silent p.T224T 0.24 TCGA-AD-5900-01 15 68631921 68631921 G A ITGA11 Missense_Mutation p.T398M 0.16 deleterious(0.01) probably_damaging(0.969) TCGA-AD-5900-01 15 69348948 69348950 TCT - NOX5 In_Frame_Del p.F739del 0.31 TCGA-AD-5900-01 15 70994417 70994417 G A UACA Intron 0.26 TCGA-AD-5900-01 15 71184407 71184407 T C THAP10 Missense_Mutation p.I69V 0.25 tolerated(0.37) benign(0.038) TCGA-AD-5900-01 15 72557510 72557510 C A PARP6 Missense_Mutation p.E80D 0.30 tolerated(0.14) benign(0.005) TCGA-AD-5900-01 15 73580877 73580877 C T NEO1 Nonsense_Mutation p.R1212* 0.29 TCGA-AD-5900-01 15 73996585 73996585 A G CD276 Missense_Mutation p.I381V 0.26 tolerated(0.5) benign(0.086) TCGA-AD-5900-01 15 74177214 74177214 G A TBC1D21 Missense_Mutation p.V154I 0.12 tolerated(0.07) benign(0.136) TCGA-AD-5900-01 15 74635334 74635334 G A CYP11A1 Missense_Mutation p.A325V 0.31 deleterious(0) probably_damaging(0.991) TCGA-AD-5900-01 15 74911640 74911640 C T CLK3 Nonsense_Mutation p.R183* 0.24 TCGA-AD-5900-01 15 74948327 74948327 G A EDC3 Silent p.D189D 0.23 TCGA-AD-5900-01 15 75132971 75132971 C T ULK3 Missense_Mutation p.A161T 0.30 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 15 75189523 75189524 - C MPI Frame_Shift_Ins p.V342Cfs*17 0.18 TCGA-AD-5900-01 15 75586111 75586111 G A GOLGA6D Silent p.T545T 0.18 TCGA-AD-5900-01 15 75942736 75942736 C - SNX33 Frame_Shift_Del p.C435Afs*62 0.32 TCGA-AD-5900-01 15 78882365 78882366 - T CHRNA5 Frame_Shift_Ins p.D214* 0.18 TCGA-AD-5900-01 15 81295807 81295807 C A MESDC1 3'UTR 0.08 TCGA-AD-5900-01 15 83218232 83218232 T G CPEB1 Silent p.T459T 0.08 TCGA-AD-5900-01 15 84651301 84651301 C T ADAMTSL3 Missense_Mutation p.A974V 0.12 deleterious(0.05) probably_damaging(0.936) TCGA-AD-5900-01 15 85333993 85333993 C T ZNF592 Missense_Mutation p.R760W 0.19 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 15 85478725 85478725 C T SLC28A1 Silent p.V519V 0.37 TCGA-AD-5900-01 15 88680676 88680676 C T NTRK3 Missense_Mutation p.G194D 0.30 tolerated(0.27) benign(0.002) TCGA-AD-5900-01 15 89392690 89392690 G T ACAN Missense_Mutation p.R585L 0.31 deleterious(0.01) unknown(0) TCGA-AD-5900-01 15 90168789 90168789 T C TICRR Missense_Mutation p.S1750P 0.19 deleterious(0) probably_damaging(0.973) TCGA-AD-5900-01 15 90280854 90280854 G T WDR93 Missense_Mutation p.K553N 0.05 tolerated(0.07) probably_damaging(0.973) TCGA-AD-5900-01 15 90378853 90378853 G A C15orf38-AP3S2 Missense_Mutation p.A360V 0.31 deleterious_low_confidence(0.04) benign(0.307) TCGA-AD-5900-01 15 91801758 91801758 C A SV2B Missense_Mutation p.P298T 0.09 deleterious(0.02) probably_damaging(1) TCGA-AD-5900-01 15 93162659 93162659 G T FAM174B 3'UTR 0.26 TCGA-AD-5900-01 15 93482926 93482926 C T CHD2 Nonsense_Mutation p.R224* 0.23 TCGA-AD-5900-01 15 94841690 94841690 C A MCTP2 Silent p.R66R 0.32 TCGA-AD-5900-01 15 95022368 95022368 G A MCTP2 3'UTR 0.25 TCGA-AD-5900-01 15 99670283 99670284 GA - SYNM Frame_Shift_Del p.E575Gfs*4 0.27 TCGA-AD-5900-01 16 111222 111222 C T RHBDF1 Missense_Mutation p.V485M 0.44 deleterious(0) benign(0.318) TCGA-AD-5900-01 16 11374697 11374697 A G PRM1 3'UTR 0.30 TCGA-AD-5900-01 16 11855841 11855841 G A ZC3H7A Missense_Mutation p.A713V 0.28 deleterious(0) possibly_damaging(0.635) TCGA-AD-5900-01 16 1394634 1394634 G A BAIAP3 Silent p.V599V 0.11 TCGA-AD-5900-01 16 1399273 1399273 C T TSR3 3'UTR 0.26 TCGA-AD-5900-01 16 1411904 1411904 G A GNPTG Missense_Mutation p.V89M 0.20 deleterious(0) probably_damaging(0.993) TCGA-AD-5900-01 16 14341140 14341140 A - MKL2 Frame_Shift_Del p.K676Rfs*3 0.18 TCGA-AD-5900-01 16 14766439 14766439 A - PLA2G10 3'UTR 0.24 TCGA-AD-5900-01 16 1550167 1550167 T C TELO2 Splice_Site p.X334_splice 0.29 TCGA-AD-5900-01 16 15813155 15813155 G A MYH11 Missense_Mutation p.A1705V 0.33 probably_damaging(0.931) TCGA-AD-5900-01 16 18433273 18433273 G A NPIPA8 5'Flank 0.26 TCGA-AD-5900-01 16 19131320 19131320 C T ITPRIPL2 3'UTR 0.27 TCGA-AD-5900-01 16 19195025 19195025 C T SYT17 Silent p.D169D 0.31 TCGA-AD-5900-01 16 19452150 19452150 T C TMC5 Splice_Site p.X263_splice 0.28 TCGA-AD-5900-01 16 19639973 19639973 A T C16orf62 Silent p.R555R 0.08 TCGA-AD-5900-01 16 20084928 20084928 G A GPR139 Missense_Mutation p.T4M 0.26 deleterious_low_confidence(0) benign(0.23) TCGA-AD-5900-01 16 2011238 2011240 AGG - NDUFB10 In_Frame_Del p.E74del 0.11 TCGA-AD-5900-01 16 204330 204330 C T HBZ Silent p.A120A 0.13 TCGA-AD-5900-01 16 20981235 20981235 C T DNAH3 Silent p.P2779P 0.24 TCGA-AD-5900-01 16 20996657 20996657 C T DNAH3 Nonsense_Mutation p.W2469* 0.29 TCGA-AD-5900-01 16 2129087 2129087 C T TSC2 Silent p.S1007S 0.12 TCGA-AD-5900-01 16 21475190 21475190 C T CTD-2547E10.2 RNA 0.07 TCGA-AD-5900-01 16 22358764 22358764 A G CDR2 Missense_Mutation p.L296P 0.22 tolerated(0.28) benign(0.028) TCGA-AD-5900-01 16 2329025 2329025 C T ABCA3 Missense_Mutation p.R1489H 0.13 tolerated(0.25) benign(0.003) TCGA-AD-5900-01 16 2335445 2335445 G C ABCA3 Missense_Mutation p.L1161V 0.29 tolerated(0.09) benign(0.381) TCGA-AD-5900-01 16 23478870 23478870 G A GGA2 3'UTR 0.12 TCGA-AD-5900-01 16 24582525 24582525 G A RBBP6 Missense_Mutation p.V1380M 0.29 tolerated_low_confidence(0.07) unknown(0) TCGA-AD-5900-01 16 27473650 27473650 C - GTF3C1 Frame_Shift_Del p.V2028Sfs*25 0.14 TCGA-AD-5900-01 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.25 TCGA-AD-5900-01 16 27788248 27788248 G T KIAA0556 Splice_Site p.X1484_splice 0.27 TCGA-AD-5900-01 16 29096560 29096560 C T RRN3P2 RNA 0.17 TCGA-AD-5900-01 16 29824760 29824760 G A PRRT2 Missense_Mutation p.A129T 0.27 tolerated_low_confidence(0.08) benign(0.046) TCGA-AD-5900-01 16 29825146 29825146 G - PRRT2 Frame_Shift_Del p.G259Vfs*54 0.27 TCGA-AD-5900-01 16 29993036 29993036 T G TAOK2 Missense_Mutation p.I237S 0.31 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 16 30997993 30997993 G A HSD3B7 Missense_Mutation p.E167K 0.30 deleterious(0) possibly_damaging(0.725) TCGA-AD-5900-01 16 31097797 31097797 C T PRSS53 Missense_Mutation p.R175H 0.16 deleterious(0.01) probably_damaging(1) TCGA-AD-5900-01 16 31288051 31288051 G A ITGAM Missense_Mutation p.A357T 0.10 deleterious(0.04) benign(0.408) TCGA-AD-5900-01 16 3293270 3293270 G A MEFV Silent p.H739H 0.32 TCGA-AD-5900-01 16 3297099 3297099 C T MEFV Missense_Mutation p.V502I 0.23 tolerated(0.19) benign(0.012) TCGA-AD-5900-01 16 3534843 3534843 C T NAA60 Silent p.S239S 0.39 TCGA-AD-5900-01 16 3556362 3556362 G A CLUAP1 Missense_Mutation p.V56M 0.28 deleterious(0.02) possibly_damaging(0.771) TCGA-AD-5900-01 16 3777817 3777817 G - CREBBP Frame_Shift_Del p.Q2411Sfs*2 0.22 TCGA-AD-5900-01 16 4164055 4164055 G A ADCY9 Silent p.I463I 0.10 TCGA-AD-5900-01 16 4433067 4433067 A G VASN 3'UTR 0.17 TCGA-AD-5900-01 16 4924217 4924217 G A UBN1 Silent p.S602S 0.40 TCGA-AD-5900-01 16 4935089 4935089 C T PPL Silent p.A1189A 0.23 TCGA-AD-5900-01 16 49559286 49559286 C T ZNF423 Missense_Mutation p.V1233M 0.17 tolerated(0.11) probably_damaging(0.955) TCGA-AD-5900-01 16 53488672 53488672 C T RBL2 Missense_Mutation p.S366L 0.26 tolerated(0.16) benign(0.045) TCGA-AD-5900-01 16 55516959 55516959 C T MMP2 Missense_Mutation p.R98W 0.25 deleterious(0) possibly_damaging(0.774) TCGA-AD-5900-01 16 55857496 55857496 T C CES1 Missense_Mutation p.I169V 0.11 deleterious(0.02) benign(0.351) TCGA-AD-5900-01 16 56531727 56531727 A - BBS2 Frame_Shift_Del p.F575Lfs*8 0.17 TCGA-AD-5900-01 16 56871556 56871556 C T NUP93 Silent p.L646L 0.32 TCGA-AD-5900-01 16 57504258 57504258 G A POLR2C Silent p.K225K 0.08 TCGA-AD-5900-01 16 57689811 57689811 G - GPR56 Frame_Shift_Del p.G309Vfs*14 0.31 TCGA-AD-5900-01 16 57787128 57787128 C A KATNB1 Missense_Mutation p.P332H 0.33 deleterious(0.04) possibly_damaging(0.893) TCGA-AD-5900-01 16 57991251 57991251 G A CNGB1 Nonsense_Mutation p.Q290* 0.26 TCGA-AD-5900-01 16 58438667 58438667 C T GINS3 3'UTR 0.28 TCGA-AD-5900-01 16 58552804 58552804 A - SETD6 Frame_Shift_Del p.T433Lfs*31 0.23 TCGA-AD-5900-01 16 618994 618994 G - PIGQ 5'Flank 0.52 TCGA-AD-5900-01 16 66437076 66437076 G A CDH5 3'UTR 0.41 TCGA-AD-5900-01 16 66655998 66655998 A G CMTM4 Missense_Mutation p.V197A 0.22 tolerated(0.12) benign(0.026) TCGA-AD-5900-01 16 66945906 66945906 G - CDH16 Frame_Shift_Del p.K563Sfs*22 0.30 TCGA-AD-5900-01 16 67201666 67201666 G - HSF4 Frame_Shift_Del p.D302Mfs*17 0.50 TCGA-AD-5900-01 16 67271439 67271439 A G FHOD1 Missense_Mutation p.L263P 0.26 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 16 67320910 67320910 A G PLEKHG4 Missense_Mutation p.D978G 0.43 deleterious(0) probably_damaging(0.987) TCGA-AD-5900-01 16 67472507 67472507 C T ATP6V0D1 Missense_Mutation p.R327H 0.05 deleterious(0) probably_damaging(0.995) TCGA-AD-5900-01 16 67696271 67696271 C T PARD6A Silent p.N254N 0.27 TCGA-AD-5900-01 16 67701796 67701796 G C C16orf86 Silent p.P116P 0.34 TCGA-AD-5900-01 16 67963906 67963906 G A CTRL Silent p.R242R 0.25 TCGA-AD-5900-01 16 67980379 67980379 C T SLC12A4 Missense_Mutation p.R802Q 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-AD-5900-01 16 69354998 69354998 G A VPS4A Missense_Mutation p.R299H 0.39 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 16 69395368 69395368 G T TERF2 Missense_Mutation p.S413R 0.06 deleterious(0) benign(0.205) TCGA-AD-5900-01 16 70508709 70508709 G A FUK Silent p.T724T 0.33 TCGA-AD-5900-01 16 71423757 71423757 C - CALB2 Frame_Shift_Del p.M271Cfs*60 0.32 TCGA-AD-5900-01 16 71887162 71887162 C - ATXN1L 3'UTR 0.30 TCGA-AD-5900-01 16 72829139 72829139 G A ZFHX3 Missense_Mutation p.P2481L 0.09 unknown(0) TCGA-AD-5900-01 16 72993336 72993336 G A ZFHX3 Nonsense_Mutation p.R237* 0.07 TCGA-AD-5900-01 16 731333 731333 T C STUB1 Missense_Mutation p.I114T 0.33 deleterious(0) probably_damaging(0.994) TCGA-AD-5900-01 16 733865 733865 T A JMJD8 Missense_Mutation p.N95I 0.50 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 16 74338233 74338233 C T PSMD7 Silent p.H157H 0.22 TCGA-AD-5900-01 16 74695154 74695154 G A RFWD3 Missense_Mutation p.A65V 0.30 tolerated_low_confidence(0.42) benign(0.001) TCGA-AD-5900-01 16 77822709 77822709 G A VAT1L Missense_Mutation p.A44T 0.38 tolerated(0.12) benign(0.255) TCGA-AD-5900-01 16 81062307 81062307 C T CENPN Intron 0.31 TCGA-AD-5900-01 16 83984849 83984849 C T OSGIN1 Intron 0.07 TCGA-AD-5900-01 16 84456022 84456022 C T ATP2C2 Silent p.S217S 0.27 TCGA-AD-5900-01 16 85682157 85682157 G T GSE1 Splice_Site p.X76_splice 0.24 TCGA-AD-5900-01 16 86614474 86614474 G - FOXL1 3'UTR 0.29 TCGA-AD-5900-01 16 87448108 87448108 C T ZCCHC14 Silent p.P368P 0.25 TCGA-AD-5900-01 16 87448149 87448149 T A ZCCHC14 Splice_Site p.X355_splice 0.24 TCGA-AD-5900-01 16 87678282 87678282 C T JPH3 Silent p.G267G 0.38 TCGA-AD-5900-01 16 89167279 89167279 G A ACSF3 Missense_Mutation p.G64S 0.20 deleterious(0.03) possibly_damaging(0.684) TCGA-AD-5900-01 16 89755702 89755702 C A CDK10 Missense_Mutation p.R44S 0.08 deleterious(0.01) possibly_damaging(0.83) TCGA-AD-5900-01 16 89865434 89865434 G A FANCA Intron 0.39 TCGA-AD-5900-01 16 89940110 89940110 A G TCF25 Missense_Mutation p.E12G 0.23 deleterious(0.02) unknown(0) TCGA-AD-5900-01 16 90096225 90096225 C T C16orf3 5'UTR 0.34 TCGA-AD-5900-01 16 90110098 90110098 G A GAS8 3'UTR 0.28 TCGA-AD-5900-01 17 10295283 10295283 A T MYH8 Missense_Mutation p.D1860E 0.08 deleterious(0.03) benign(0.026) TCGA-AD-5900-01 17 10353804 10353804 C T MYH4 Missense_Mutation p.A1383T 0.27 deleterious(0.04) benign(0.133) TCGA-AD-5900-01 17 11461291 11461291 C T SHISA6 Silent p.S442S 0.21 TCGA-AD-5900-01 17 11593643 11593643 C T DNAH9 Silent p.L1502L 0.07 TCGA-AD-5900-01 17 15619927 15619927 C A ZNF286A Missense_Mutation p.L297I 0.27 tolerated(0.31) probably_damaging(0.994) TCGA-AD-5900-01 17 15938192 15938192 C A NCOR1 Missense_Mutation p.G2341V 0.29 probably_damaging(1) TCGA-AD-5900-01 17 1630802 1630802 C A WDR81 Missense_Mutation p.P850H 0.36 deleterious(0.04) benign(0.379) TCGA-AD-5900-01 17 1649110 1649110 G A SERPINF2 Missense_Mutation p.D92N 0.36 deleterious(0.04) benign(0.124) TCGA-AD-5900-01 17 1657514 1657514 G A SERPINF2 Missense_Mutation p.E388K 0.33 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 17 1703946 1703946 C T SMYD4 Missense_Mutation p.V248I 0.28 tolerated(0.57) benign(0.123) TCGA-AD-5900-01 17 18003703 18003703 C T DRG2 Missense_Mutation p.S165F 0.24 deleterious(0) possibly_damaging(0.797) TCGA-AD-5900-01 17 18232647 18232647 C T SHMT1 Silent p.T409T 0.28 TCGA-AD-5900-01 17 18881022 18881022 G - FAM83G Frame_Shift_Del p.H653Ifs*2 0.15 TCGA-AD-5900-01 17 18881242 18881242 C T FAM83G Silent p.V579V 0.22 TCGA-AD-5900-01 17 20921317 20921317 G A USP22 Missense_Mutation p.R210C 0.25 tolerated(0.08) benign(0.013) TCGA-AD-5900-01 17 21101506 21101506 T - TMEM11 3'UTR 0.25 TCGA-AD-5900-01 17 21321467 21321467 G A KCNJ12 3'UTR 0.19 TCGA-AD-5900-01 17 2310286 2310287 - G AC006435.1 3'UTR 0.19 TCGA-AD-5900-01 17 27047808 27047810 AAG - RPL23A In_Frame_Del p.K39del 0.22 TCGA-AD-5900-01 17 27061208 27061208 T C NEK8 Splice_Site p.X85_splice 0.12 TCGA-AD-5900-01 17 27061855 27061855 C T NEK8 Missense_Mutation p.H107Y 0.22 deleterious(0.02) possibly_damaging(0.745) TCGA-AD-5900-01 17 27208844 27208844 G A FLOT2 Missense_Mutation p.A301V 0.47 deleterious(0) possibly_damaging(0.806) TCGA-AD-5900-01 17 27899563 27899563 G A TP53I13 Missense_Mutation p.R306H 0.46 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 17 27963658 27963658 T C SSH2 Missense_Mutation p.I503M 0.31 tolerated_low_confidence(0.52) benign(0.01) TCGA-AD-5900-01 17 28384818 28384818 C T EFCAB5 Silent p.D830D 0.34 TCGA-AD-5900-01 17 29631826 29631826 A G EVI2B Missense_Mutation p.S268P 0.26 deleterious(0.02) possibly_damaging(0.82) TCGA-AD-5900-01 17 30796174 30796174 C - PSMD11 Frame_Shift_Del p.P204Lfs*48 0.20 TCGA-AD-5900-01 17 32687534 32687534 T C CCL1 3'UTR 0.27 TCGA-AD-5900-01 17 32953487 32953487 G A TMEM132E Missense_Mutation p.A137T 0.29 tolerated(0.25) benign(0.225) TCGA-AD-5900-01 17 3301305 3301305 C T OR1E1 Missense_Mutation p.A134T 0.09 tolerated(1) benign(0.001) TCGA-AD-5900-01 17 33326452 33326452 T C LIG3 Missense_Mutation p.M747T 0.16 deleterious(0.01) possibly_damaging(0.836) TCGA-AD-5900-01 17 33680022 33680022 T C SLFN11 Missense_Mutation p.I687V 0.21 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 17 33905203 33905203 A - PEX12 5'UTR 0.28 TCGA-AD-5900-01 17 3470029 3470029 A G SHPK 3'UTR 0.26 TCGA-AD-5900-01 17 35583275 35583275 T C ACACA Silent p.A1115A 0.21 TCGA-AD-5900-01 17 35620744 35620744 T A ACACA Missense_Mutation p.Q391H 0.28 tolerated(0.99) benign(0.004) TCGA-AD-5900-01 17 35736291 35736291 T C C17orf78 Missense_Mutation p.F121S 0.29 tolerated(0.1) benign(0.007) TCGA-AD-5900-01 17 36634074 36634074 G T ARHGAP23 Missense_Mutation p.E791D 0.07 deleterious(0.04) possibly_damaging(0.821) TCGA-AD-5900-01 17 36891671 36891675 GGCTG - PCGF2 Frame_Shift_Del p.P279Hfs*37 0.21 TCGA-AD-5900-01 17 37263682 37263682 C T PLXDC1 Missense_Mutation p.R230H 0.31 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 17 37826686 37826686 C A PNMT 3'UTR 0.39 TCGA-AD-5900-01 17 38555154 38555154 G A TOP2A Silent p.N1108N 0.26 TCGA-AD-5900-01 17 38643458 38643458 G T TNS4 Missense_Mutation p.P373H 0.06 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 17 38976349 38976349 T C KRT10 Silent p.R369R 0.27 TCGA-AD-5900-01 17 39081726 39081726 G A KRT23 Missense_Mutation p.T341M 0.26 tolerated(0.34) benign(0.001) TCGA-AD-5900-01 17 3916872 3916872 C A ZZEF1 Missense_Mutation p.R2817M 0.08 deleterious(0) possibly_damaging(0.75) TCGA-AD-5900-01 17 39616376 39616376 G - KRT32 Frame_Shift_Del p.Q445Rfs*40 0.26 TCGA-AD-5900-01 17 39671648 39671648 C T KRT15 Intron 0.25 TCGA-AD-5900-01 17 39743024 39743024 C T KRT14 Silent p.G21G 0.25 TCGA-AD-5900-01 17 39743092 39743092 A C KRT14 5'UTR 0.27 TCGA-AD-5900-01 17 39743093 39743093 G A KRT14 5'UTR 0.20 TCGA-AD-5900-01 17 39777083 39777083 C T KRT17 Missense_Mutation p.V337M 0.30 tolerated(0.49) benign(0.006) TCGA-AD-5900-01 17 39783202 39783202 A G KRT17 5'Flank 0.31 TCGA-AD-5900-01 17 40028377 40028377 C T ACLY Missense_Mutation p.G901R 0.33 deleterious(0.01) probably_damaging(1) TCGA-AD-5900-01 17 40269445 40269445 C T KAT2A Missense_Mutation p.R533H 0.11 deleterious(0) probably_damaging(0.985) TCGA-AD-5900-01 17 40369410 40369410 G T STAT5B Silent p.A414A 0.36 TCGA-AD-5900-01 17 40468879 40468879 G - STAT3 Frame_Shift_Del p.R729Afs*3 0.23 TCGA-AD-5900-01 17 40557114 40557114 G A PTRF Missense_Mutation p.T255M 0.22 deleterious(0) probably_damaging(0.994) TCGA-AD-5900-01 17 40821936 40821936 C T PLEKHH3 Silent p.T671T 0.22 TCGA-AD-5900-01 17 40837406 40837407 - G CNTNAP1 Frame_Shift_Ins p.A230Gfs*31 0.26 TCGA-AD-5900-01 17 41477482 41477482 G A ARL4D Missense_Mutation p.V128M 0.27 deleterious(0) possibly_damaging(0.708) TCGA-AD-5900-01 17 41570084 41570084 G A DHX8 Missense_Mutation p.R180Q 0.34 tolerated(0.21) unknown(0) TCGA-AD-5900-01 17 42249544 42249544 C T ASB16 Silent p.R144R 0.34 TCGA-AD-5900-01 17 42271474 42271474 C - ATXN7L3 3'UTR 0.17 TCGA-AD-5900-01 17 42427902 42427902 C - GRN Frame_Shift_Del p.L187Wfs*69 0.34 TCGA-AD-5900-01 17 42476293 42476295 TCT - GPATCH8 In_Frame_Del p.K1050_D1051delinsN 0.29 TCGA-AD-5900-01 17 43318931 43318931 C T FMNL1 Silent p.P505P 0.21 TCGA-AD-5900-01 17 4458667 4458667 C T MYBBP1A 5'UTR 0.38 TCGA-AD-5900-01 17 45901819 45901819 A C MRPL10 Missense_Mutation p.C190G 0.18 deleterious(0.01) possibly_damaging(0.78) TCGA-AD-5900-01 17 4686189 4686189 G A TM4SF5 Missense_Mutation p.E146K 0.26 tolerated(0.8) benign(0.007) TCGA-AD-5900-01 17 47915778 47915778 A C TAC4 3'UTR 0.24 TCGA-AD-5900-01 17 48046845 48046845 C T DLX4 Missense_Mutation p.P5S 0.20 tolerated(0.13) benign(0.048) TCGA-AD-5900-01 17 48165619 48165619 G A ITGA3 Intron 0.20 TCGA-AD-5900-01 17 4862729 4862729 G T SPAG7 3'UTR 0.32 TCGA-AD-5900-01 17 48627368 48627368 C A SPATA20 Silent p.S295S 0.26 TCGA-AD-5900-01 17 4862809 4862809 A T SPAG7 3'UTR 0.25 TCGA-AD-5900-01 17 48940322 48940322 A G TOB1 3'UTR 0.28 TCGA-AD-5900-01 17 49231761 49231761 C T NME1 Silent p.I9I 0.25 TCGA-AD-5900-01 17 50235196 50235196 G - CA10 5'UTR 0.28 TCGA-AD-5900-01 17 51900589 51900590 - A KIF2B Frame_Shift_Ins p.G68Rfs*5 0.23 TCGA-AD-5900-01 17 53121134 53121134 A - STXBP4 Intron 0.23 TCGA-AD-5900-01 17 5393822 5393822 C T MIS12 3'UTR 0.05 TCGA-AD-5900-01 17 55183786 55183788 GAG - AKAP1 In_Frame_Del p.E322del 0.09 TCGA-AD-5900-01 17 56082691 56082691 A - SRSF1 3'UTR 0.27 TCGA-AD-5900-01 17 56679811 56679811 G A TEX14 Nonsense_Mutation p.R499* 0.25 TCGA-AD-5900-01 17 57078967 57078967 G - TRIM37 Frame_Shift_Del p.P935Rfs*15 0.26 TCGA-AD-5900-01 17 6051 6051 C T DOC2B Missense_Mutation p.A295T 0.32 deleterious(0) probably_damaging(0.942) TCGA-AD-5900-01 17 61417621 61417621 C T TANC2 Missense_Mutation p.R505C 0.21 deleterious(0) probably_damaging(0.915) TCGA-AD-5900-01 17 61767716 61767716 C T MAP3K3 Missense_Mutation p.R417C 0.23 deleterious(0) probably_damaging(0.983) TCGA-AD-5900-01 17 61898949 61898949 C T FTSJ3 Missense_Mutation p.A551T 0.25 tolerated(0.85) possibly_damaging(0.844) TCGA-AD-5900-01 17 62034754 62034754 G T SCN4A Missense_Mutation p.A715D 0.22 deleterious(0) probably_damaging(0.956) TCGA-AD-5900-01 17 62080178 62080178 G A ICAM2 Missense_Mutation p.R253C 0.33 tolerated(0.12) benign(0.086) TCGA-AD-5900-01 17 63532567 63532567 C T AXIN2 Missense_Mutation p.R671H 0.22 tolerated(0.15) probably_damaging(0.999) TCGA-AD-5900-01 17 63533658 63533659 - G AXIN2 Frame_Shift_Ins p.L499Pfs*129 0.26 TCGA-AD-5900-01 17 64880962 64880962 A G CACNG5 Intron 0.08 TCGA-AD-5900-01 17 65132287 65132287 C T HELZ Missense_Mutation p.S994N 0.04 deleterious(0.01) probably_damaging(0.98) TCGA-AD-5900-01 17 65740061 65740061 G A NOL11 3'UTR 0.30 TCGA-AD-5900-01 17 66417948 66417948 C T WIPI1 Missense_Mutation p.R436H 0.26 deleterious_low_confidence(0.04) benign(0.006) TCGA-AD-5900-01 17 66928444 66928444 C T ABCA8 Missense_Mutation p.R261Q 0.27 tolerated(1) benign(0.034) TCGA-AD-5900-01 17 67256519 67256519 G T ABCA5 Missense_Mutation p.T1200N 0.06 tolerated(0.31) benign(0.003) TCGA-AD-5900-01 17 6919110 6919110 C T C17orf49 Missense_Mutation p.T45M 0.28 deleterious(0.02) probably_damaging(0.917) TCGA-AD-5900-01 17 7077523 7077523 A G ASGR1 Silent p.A176A 0.20 TCGA-AD-5900-01 17 70845812 70845812 C T SLC39A11 Missense_Mutation p.A195T 0.35 tolerated(0.08) benign(0.003) TCGA-AD-5900-01 17 71281791 71281791 A G CDC42EP4 Silent p.D283D 0.29 TCGA-AD-5900-01 17 72736930 72736930 C T RAB37 Silent p.G44G 0.17 TCGA-AD-5900-01 17 72920874 72920874 C T OTOP2 Silent p.G49G 0.23 TCGA-AD-5900-01 17 72939782 72939782 C T OTOP3 Silent p.I256I 0.14 TCGA-AD-5900-01 17 72943000 72943000 A G OTOP3 Silent p.A350A 0.21 TCGA-AD-5900-01 17 73000040 73000040 G T CDR2L Missense_Mutation p.E423D 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-AD-5900-01 17 73489947 73489947 G T KIAA0195 Missense_Mutation p.S786I 0.15 deleterious(0.05) possibly_damaging(0.498) TCGA-AD-5900-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.35 TCGA-AD-5900-01 17 73495447 73495447 G A KIAA0195 3'UTR 0.25 TCGA-AD-5900-01 17 73498439 73498439 T C CASKIN2 Missense_Mutation p.T906A 0.22 tolerated(0.07) possibly_damaging(0.899) TCGA-AD-5900-01 17 73499250 73499250 G A CASKIN2 Silent p.G635G 0.26 TCGA-AD-5900-01 17 73733490 73733490 G A ITGB4 Missense_Mutation p.G693E 0.28 tolerated(0.27) probably_damaging(0.998) TCGA-AD-5900-01 17 73870812 73870812 G A TRIM47 Missense_Mutation p.R557C 0.29 deleterious(0.01) probably_damaging(0.961) TCGA-AD-5900-01 17 74004782 74004782 G T EVPL Missense_Mutation p.L1502M 0.39 deleterious(0.01) benign(0.311) TCGA-AD-5900-01 17 74470595 74470595 C - RHBDF2 Frame_Shift_Del p.A471Pfs*208 0.23 TCGA-AD-5900-01 17 74719935 74719935 G A JMJD6 Missense_Mutation p.R242W 0.19 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 17 7499267 7499267 G A FXR2 Nonsense_Mutation p.R236* 0.30 TCGA-AD-5900-01 17 7592225 7592225 A G WRAP53 Missense_Mutation p.S87G 0.33 tolerated_low_confidence(0.39) benign(0.003) TCGA-AD-5900-01 17 76128558 76128558 C - TMC8 Frame_Shift_Del p.P141Lfs*7 0.33 TCGA-AD-5900-01 17 76396823 76396823 C T PGS1 Missense_Mutation p.A256V 0.25 deleterious(0.03) benign(0.075) TCGA-AD-5900-01 17 76441711 76441711 G A DNAH17 Missense_Mutation p.R3741W 0.22 probably_damaging(0.997) TCGA-AD-5900-01 17 76475682 76475682 G - DNAH17 Frame_Shift_Del p.G2582Afs*13 0.31 TCGA-AD-5900-01 17 76496602 76496602 T - DNAH17-AS1 3'UTR 0.24 TCGA-AD-5900-01 17 76498808 76498808 C T DNAH17-AS1 3'UTR 0.27 TCGA-AD-5900-01 17 76565497 76565497 G A DNAH17 Missense_Mutation p.T386M 0.28 benign(0.015) TCGA-AD-5900-01 17 7733759 7733759 C A DNAH2 Missense_Mutation p.L3999M 0.26 probably_damaging(0.992) TCGA-AD-5900-01 17 78358917 78358917 G A RNF213 Missense_Mutation p.V4801I 0.23 possibly_damaging(0.492) TCGA-AD-5900-01 17 78389007 78389007 G A ENDOV Missense_Mutation p.A5T 0.24 tolerated(0.09) benign(0.156) TCGA-AD-5900-01 17 79205223 79205223 C T ENTHD2 Missense_Mutation p.R290H 0.32 tolerated(0.12) benign(0.003) TCGA-AD-5900-01 17 79226391 79226391 G T SLC38A10 Missense_Mutation p.P517T 0.24 tolerated(0.05) benign(0.284) TCGA-AD-5900-01 17 7942572 7942572 C - ALOX15B Frame_Shift_Del p.P35Hfs*21 0.41 TCGA-AD-5900-01 17 79573788 79573788 C T NPLOC4 Missense_Mutation p.E195K 0.26 tolerated(0.91) benign(0.069) TCGA-AD-5900-01 17 79612605 79612605 C T TSPAN10 Silent p.L208L 0.21 TCGA-AD-5900-01 17 79898714 79898714 G A MYADML2 Missense_Mutation p.R302C 0.17 tolerated(0.19) probably_damaging(0.943) TCGA-AD-5900-01 17 80393745 80393745 G A HEXDC Missense_Mutation p.A210T 0.21 tolerated(0.25) benign(0.005) TCGA-AD-5900-01 17 8044550 8044550 C T PER1 Missense_Mutation p.E1237K 0.35 tolerated(0.2) benign(0.033) TCGA-AD-5900-01 17 8046870 8046870 G T PER1 Missense_Mutation p.P929Q 0.24 deleterious(0) benign(0.035) TCGA-AD-5900-01 17 80708458 80708458 G - FN3K Frame_Shift_Del p.F255Sfs*32 0.25 TCGA-AD-5900-01 17 80788454 80788454 G A ZNF750 Missense_Mutation p.A579V 0.19 tolerated(0.13) benign(0.054) TCGA-AD-5900-01 17 8133261 8133261 G A CTC1 Missense_Mutation p.R987W 0.28 deleterious(0.02) possibly_damaging(0.901) TCGA-AD-5900-01 17 8141769 8141769 G A CTC1 Nonsense_Mutation p.Q126* 0.25 TCGA-AD-5900-01 17 8215388 8215388 C - ARHGEF15 Frame_Shift_Del p.T13Rfs*169 0.34 TCGA-AD-5900-01 17 8701484 8701484 G A MFSD6L Nonsense_Mutation p.R319* 0.32 TCGA-AD-5900-01 17 9791262 9791262 C T GLP2R Missense_Mutation p.A433V 0.27 deleterious(0) probably_damaging(0.991) TCGA-AD-5900-01 18 10546354 10546355 - A NAPG Frame_Shift_Ins p.N182Kfs*4 0.24 TCGA-AD-5900-01 18 11881047 11881047 C T GNAL Silent p.A430A 0.33 TCGA-AD-5900-01 18 12254857 12254857 C G CIDEA Intron 0.20 TCGA-AD-5900-01 18 12785778 12785778 T C PTPN2 3'UTR 0.19 TCGA-AD-5900-01 18 14828278 14828278 G T ANKRD30B Missense_Mutation p.E796D 0.13 tolerated(0.51) benign(0.001) TCGA-AD-5900-01 18 20573495 20573495 C A RBBP8 Missense_Mutation p.P569T 0.28 deleterious(0.01) possibly_damaging(0.776) TCGA-AD-5900-01 18 21121150 21121151 - A NPC1 Frame_Shift_Ins p.C799Lfs*7 0.31 TCGA-AD-5900-01 18 21396387 21396387 A G LAMA3 Missense_Mutation p.M695V 0.05 benign(0.001) TCGA-AD-5900-01 18 216583 216583 C T THOC1 Missense_Mutation p.R502Q 0.29 deleterious(0.01) benign(0.419) TCGA-AD-5900-01 18 22805247 22805247 C T ZNF521 Missense_Mutation p.V879I 0.04 tolerated(0.64) benign(0.029) TCGA-AD-5900-01 18 2706440 2706440 A - SMCHD1 Frame_Shift_Del p.K680Nfs*3 0.23 TCGA-AD-5900-01 18 29178836 29178836 A - TTR 3'UTR 0.56 TCGA-AD-5900-01 18 30903470 30903470 G T CCDC178 Missense_Mutation p.T336N 0.29 tolerated(0.54) benign(0.001) TCGA-AD-5900-01 18 32409011 32409011 C T DTNA Intron 0.26 TCGA-AD-5900-01 18 32888087 32888090 AAAC - ZNF271 RNA 0.09 TCGA-AD-5900-01 18 43437981 43437981 G A EPG5 Missense_Mutation p.L2427F 0.23 deleterious(0) possibly_damaging(0.453) TCGA-AD-5900-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.28 TCGA-AD-5900-01 18 43495486 43495486 G A EPG5 Missense_Mutation p.T1228M 0.30 tolerated(0.22) benign(0.014) TCGA-AD-5900-01 18 44181304 44181304 C T LOXHD1 Missense_Mutation p.G337D 0.18 tolerated(1) probably_damaging(0.982) TCGA-AD-5900-01 18 47799807 47799807 G A MBD1 Missense_Mutation p.A494V 0.09 tolerated_low_confidence(0.06) benign(0.05) TCGA-AD-5900-01 18 47803083 47803084 CT - MBD1 Frame_Shift_Del p.D143Wfs*29 0.33 TCGA-AD-5900-01 18 50994293 50994293 A G DCC Missense_Mutation p.M1217V 0.27 deleterious(0.01) benign(0.009) TCGA-AD-5900-01 18 51863515 51863515 T C STARD6 Missense_Mutation p.M83V 0.35 tolerated(1) benign(0.007) TCGA-AD-5900-01 18 54483287 54483287 G A WDR7 Silent p.Q1072Q 0.24 TCGA-AD-5900-01 18 56205242 56205243 TC - ALPK2 Frame_Shift_Del p.D726Wfs*5 0.35 TCGA-AD-5900-01 18 581208 581208 C T CETN1 3'UTR 0.20 TCGA-AD-5900-01 18 59895676 59895676 A - KIAA1468 Frame_Shift_Del p.N433Tfs*73 0.31 TCGA-AD-5900-01 18 6978201 6978201 T C LAMA1 Missense_Mutation p.M2062V 0.32 tolerated(0.13) benign(0.004) TCGA-AD-5900-01 18 7012051 7012051 G T LAMA1 Nonsense_Mutation p.C1150* 0.22 TCGA-AD-5900-01 18 72593040 72593040 G A ZNF407 Missense_Mutation p.R1698H 0.42 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 18 73001785 73001785 T A TSHZ1 3'UTR 0.35 TCGA-AD-5900-01 18 76754190 76754190 G A SALL3 Silent p.P733P 0.39 TCGA-AD-5900-01 18 77090050 77090050 C T ATP9B Silent p.G658G 0.06 TCGA-AD-5900-01 18 77624217 77624217 G A KCNG2 Missense_Mutation p.V184M 0.43 deleterious(0.02) benign(0.135) TCGA-AD-5900-01 18 9255215 9255215 A - ANKRD12 Frame_Shift_Del p.K652Nfs*4 0.09 TCGA-AD-5900-01 18 9256311 9256312 - A ANKRD12 Frame_Shift_Ins p.D1018Rfs*2 0.24 TCGA-AD-5900-01 19 1004972 1004972 C T GRIN3B Missense_Mutation p.T491M 0.45 tolerated(1) benign(0.021) TCGA-AD-5900-01 19 10934546 10934546 C T DNM2 Nonsense_Mutation p.R622* 0.21 TCGA-AD-5900-01 19 11470601 11470601 C - DKFZP761J1410 Frame_Shift_Del p.P97Qfs*29 0.36 TCGA-AD-5900-01 19 11616952 11616952 T A ECSIT 3'UTR 0.16 TCGA-AD-5900-01 19 11917899 11917899 C T ZNF491 Silent p.H377H 0.27 TCGA-AD-5900-01 19 12175602 12175602 G T ZNF844 5'UTR 0.24 TCGA-AD-5900-01 19 1234275 1234275 C T C19orf26 Missense_Mutation p.G228D 0.32 deleterious(0) probably_damaging(0.994) TCGA-AD-5900-01 19 1254980 1254980 C - MIDN Frame_Shift_Del p.R261Afs*13 0.32 TCGA-AD-5900-01 19 12774185 12774185 G A MAN2B1 Silent p.P285P 0.27 TCGA-AD-5900-01 19 12822392 12822392 G A TNPO2 Missense_Mutation p.S309L 0.33 deleterious(0) benign(0.093) TCGA-AD-5900-01 19 12939512 12939512 T C RTBDN Silent p.V140V 0.16 TCGA-AD-5900-01 19 13184813 13184813 G A NFIX Missense_Mutation p.R264Q 0.30 tolerated(0.06) possibly_damaging(0.848) TCGA-AD-5900-01 19 13919922 13919922 G A ZSWIM4 Silent p.A300A 0.44 TCGA-AD-5900-01 19 14048619 14048619 G A PODNL1 Silent p.A75A 0.23 TCGA-AD-5900-01 19 14272195 14272195 A G LPHN1 Missense_Mutation p.V485A 0.24 tolerated(1) benign(0.006) TCGA-AD-5900-01 19 14513641 14513641 C T CD97 Silent p.S472S 0.35 TCGA-AD-5900-01 19 15308383 15308383 G - NOTCH3 Frame_Shift_Del p.P42Lfs*194 0.38 TCGA-AD-5900-01 19 15350213 15350213 G A BRD4 Missense_Mutation p.A1189V 0.26 possibly_damaging(0.499) TCGA-AD-5900-01 19 15374305 15374305 G A BRD4 Nonsense_Mutation p.R423* 0.35 TCGA-AD-5900-01 19 15558926 15558926 C A WIZ Missense_Mutation p.G65C 0.27 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-AD-5900-01 19 15662127 15662127 G A CYP4F22 Missense_Mutation p.A481T 0.33 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 19 15839412 15839412 T A OR10H2 Missense_Mutation p.L187M 0.34 deleterious(0) possibly_damaging(0.71) TCGA-AD-5900-01 19 16630951 16630951 G T C19orf44 3'UTR 0.38 TCGA-AD-5900-01 19 16638927 16638927 G A CHERP Silent p.D423D 0.25 TCGA-AD-5900-01 19 17039884 17039884 C - CPAMD8 Frame_Shift_Del p.H1052Ifs*127 0.31 TCGA-AD-5900-01 19 17088294 17088294 C T CPAMD8 Missense_Mutation p.A595T 0.37 tolerated(0.59) benign(0.004) TCGA-AD-5900-01 19 17397475 17397475 G T ANKLE1 3'UTR 0.24 TCGA-AD-5900-01 19 17435828 17435828 G - ANO8 Frame_Shift_Del p.P1010Lfs*309 0.18 TCGA-AD-5900-01 19 17835936 17835936 C T MAP1S Silent p.L128L 0.38 TCGA-AD-5900-01 19 17940956 17940956 C T JAK3 Silent p.E1056E 0.31 TCGA-AD-5900-01 19 17974063 17974065 CTT - RPL18A In_Frame_Del p.F176del 0.25 TCGA-AD-5900-01 19 18054581 18054581 G A CCDC124 3'UTR 0.12 TCGA-AD-5900-01 19 18546161 18546161 G T ISYNA1 Missense_Mutation p.L463I 0.37 deleterious(0.03) possibly_damaging(0.451) TCGA-AD-5900-01 19 18981079 18981079 A T GDF1 Missense_Mutation p.L13H 0.37 tolerated_low_confidence(0.28) unknown(0) TCGA-AD-5900-01 19 19049813 19049813 G A HOMER3 5'UTR 0.32 TCGA-AD-5900-01 19 19256495 19256495 G - MEF2B 3'Flank 0.36 TCGA-AD-5900-01 19 19337726 19337726 G - NCAN Frame_Shift_Del p.M504Wfs*14 0.14 TCGA-AD-5900-01 19 19603236 19603236 G A GATAD2A Missense_Mutation p.E131K 0.24 deleterious(0.01) benign(0.145) TCGA-AD-5900-01 19 19626851 19626851 C - NDUFA13 5'UTR 0.33 TCGA-AD-5900-01 19 19654650 19654650 C T CILP2 Silent p.D432D 0.23 TCGA-AD-5900-01 19 19735101 19735101 G A LPAR2 Silent p.P340P 0.31 TCGA-AD-5900-01 19 19737852 19737852 G A LPAR2 Missense_Mutation p.A81V 0.34 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 19 20045756 20045756 G A ZNF93 3'UTR 0.30 TCGA-AD-5900-01 19 20808247 20808247 G A ZNF626 Nonsense_Mutation p.Q146* 0.09 TCGA-AD-5900-01 19 2216630 2216630 G A DOT1L Silent p.P758P 0.36 TCGA-AD-5900-01 19 2280909 2280910 - G C19orf35 Frame_Shift_Ins p.T8Hfs*18 0.20 TCGA-AD-5900-01 19 22847896 22847896 A C ZNF492 Missense_Mutation p.K475N 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-AD-5900-01 19 2290042 2290042 C G LINGO3 Silent p.A578A 0.34 TCGA-AD-5900-01 19 23328198 23328198 A - ZNF730 Frame_Shift_Del p.N119Mfs*19 0.22 TCGA-AD-5900-01 19 23543407 23543407 G A ZNF91 Missense_Mutation p.H792Y 0.25 deleterious(0) probably_damaging(0.981) TCGA-AD-5900-01 19 23543437 23543437 A G ZNF91 Missense_Mutation p.S782P 0.25 tolerated(0.24) possibly_damaging(0.874) TCGA-AD-5900-01 19 23543486 23543486 A G ZNF91 Silent p.T765T 0.27 TCGA-AD-5900-01 19 2520686 2520686 T C GNG7 Translation_Start_Site p.M1? 0.35 tolerated(0.2) benign(0.197) TCGA-AD-5900-01 19 31770043 31770043 C T TSHZ3 Missense_Mutation p.C219Y 0.33 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 19 31770258 31770258 G A TSHZ3 Silent p.N147N 0.08 TCGA-AD-5900-01 19 33699805 33699805 G T SLC7A10 Missense_Mutation p.P522T 0.09 tolerated_low_confidence(1) benign(0) TCGA-AD-5900-01 19 33871371 33871372 AG - CEBPG 3'UTR 0.25 TCGA-AD-5900-01 19 35085231 35085231 G A SCGB2B2 Missense_Mutation p.A32V 0.27 tolerated_low_confidence(0.07) benign(0.004) TCGA-AD-5900-01 19 35451893 35451893 G A ZNF792 Silent p.C13C 0.36 TCGA-AD-5900-01 19 35556774 35556774 C T HPN Silent p.G351G 0.31 TCGA-AD-5900-01 19 35773421 35773421 G A HAMP 5'UTR 0.24 TCGA-AD-5900-01 19 35850466 35850466 G A FFAR3 Missense_Mutation p.G225E 0.14 deleterious(0) probably_damaging(0.995) TCGA-AD-5900-01 19 3586583 3586583 G A GIPC3 Missense_Mutation p.V106M 0.20 deleterious(0.01) probably_damaging(0.945) TCGA-AD-5900-01 19 35940959 35940959 G A FFAR2 Missense_Mutation p.V115M 0.35 deleterious(0) possibly_damaging(0.776) TCGA-AD-5900-01 19 36019071 36019071 C T SBSN Missense_Mutation p.R38Q 0.22 tolerated(0.11) probably_damaging(0.988) TCGA-AD-5900-01 19 3612140 3612140 G A CACTIN Silent p.I686I 0.28 TCGA-AD-5900-01 19 36209284 36209284 G A KMT2B Splice_Site p.X121_splice 0.14 TCGA-AD-5900-01 19 36276165 36276165 G A ARHGAP33 Missense_Mutation p.R599Q 0.18 deleterious_low_confidence(0) benign(0.417) TCGA-AD-5900-01 19 36499464 36499464 C T SYNE4 Silent p.E40E 0.35 TCGA-AD-5900-01 19 37383062 37383063 - T ZNF829 Frame_Shift_Ins p.P292Tfs*3 0.21 TCGA-AD-5900-01 19 37642465 37642466 - G ZNF585A 3'UTR 0.09 TCGA-AD-5900-01 19 37880679 37880679 C T ZNF527 Silent p.H576H 0.21 TCGA-AD-5900-01 19 38189329 38189329 T G ZNF607 Missense_Mutation p.K568T 0.27 deleterious(0) probably_damaging(0.989) TCGA-AD-5900-01 19 38230631 38230631 C T ZNF573 Missense_Mutation p.A254T 0.24 tolerated(0.48) benign(0.013) TCGA-AD-5900-01 19 38573513 38573513 C T SIPA1L3 Silent p.G436G 0.23 TCGA-AD-5900-01 19 38956953 38956953 G A RYR1 Silent p.K1031K 0.25 TCGA-AD-5900-01 19 38985017 38985017 C T RYR1 Silent p.H2100H 0.16 TCGA-AD-5900-01 19 38993310 38993310 G A RYR1 Missense_Mutation p.R2593H 0.16 benign(0.202) TCGA-AD-5900-01 19 39078375 39078375 C - MAP4K1 3'UTR 0.25 TCGA-AD-5900-01 19 39798948 39798948 C T LRFN1 Silent p.S547S 0.36 TCGA-AD-5900-01 19 39805146 39805146 C T LRFN1 Silent p.T277T 0.33 TCGA-AD-5900-01 19 40370522 40370522 G A FCGBP Silent p.H4048H 0.10 TCGA-AD-5900-01 19 40902865 40902865 A T PRX Missense_Mutation p.L465H 0.27 deleterious(0.05) probably_damaging(0.938) TCGA-AD-5900-01 19 41089318 41089318 G A SHKBP1 Silent p.Q325Q 0.15 TCGA-AD-5900-01 19 41897793 41897793 G A EXOSC5 Missense_Mutation p.R113C 0.41 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 19 41916565 41916565 G A BCKDHA Silent p.Q44Q 0.33 TCGA-AD-5900-01 19 42510040 42510040 C T GRIK5 Missense_Mutation p.V700M 0.29 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 19 42931474 42931474 C T LIPE 5'UTR 0.25 TCGA-AD-5900-01 19 43013354 43013354 C T CEACAM1 Silent p.L496L 0.26 TCGA-AD-5900-01 19 44352816 44352817 - TG ZNF283 3'UTR 0.26 TCGA-AD-5900-01 19 4488867 4488867 G A HDGFRP2 Silent p.A161A 0.20 TCGA-AD-5900-01 19 4510798 4510798 A G PLIN4 Silent p.S1044S 0.33 TCGA-AD-5900-01 19 45974241 45974241 G T FOSB Intron 0.33 TCGA-AD-5900-01 19 46269007 46269009 ACA - SIX5 In_Frame_Del p.L657del 0.70 TCGA-AD-5900-01 19 4653489 4653489 C T TNFAIP8L1 3'UTR 0.33 TCGA-AD-5900-01 19 47503700 47503700 C T ARHGAP35 Missense_Mutation p.R1419C 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 19 4793795 4793795 G A FEM1A Silent p.A643A 0.38 TCGA-AD-5900-01 19 47960453 47960453 C T SLC8A2 Silent p.T358T 0.37 TCGA-AD-5900-01 19 48041500 48041500 G - ZNF541 Frame_Shift_Del p.P1017Qfs*46 0.21 TCGA-AD-5900-01 19 4816800 4816800 G T TICAM1 Silent p.P530P 0.19 TCGA-AD-5900-01 19 48517565 48517565 G T ELSPBP1 Missense_Mutation p.D70Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 19 48879393 48879393 C A SYNGR4 Missense_Mutation p.P175T 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-AD-5900-01 19 48892853 48892853 G A KDELR1 Missense_Mutation p.A103V 0.33 tolerated(0.39) possibly_damaging(0.619) TCGA-AD-5900-01 19 49090536 49090536 C A SULT2B1 Missense_Mutation p.P89T 0.28 tolerated(0.08) possibly_damaging(0.868) TCGA-AD-5900-01 19 49207083 49207083 G A FUT2 Silent p.T290T 0.08 TCGA-AD-5900-01 19 49207932 49207932 G A FUT2 3'UTR 0.26 TCGA-AD-5900-01 19 49458971 49458972 GG - BAX Frame_Shift_Del p.E41Gfs*32 0.29 TCGA-AD-5900-01 19 49842673 49842673 G A CD37 Intron 0.36 TCGA-AD-5900-01 19 49937288 49937288 G A SLC17A7 Missense_Mutation p.A218V 0.33 tolerated(0.19) possibly_damaging(0.781) TCGA-AD-5900-01 19 50046382 50046382 C T RCN3 Missense_Mutation p.A300V 0.25 deleterious(0.03) benign(0.398) TCGA-AD-5900-01 19 50316458 50316458 C T FUZ 5'UTR 0.26 TCGA-AD-5900-01 19 50357983 50357983 C T PTOV1 Silent p.G128G 0.21 TCGA-AD-5900-01 19 50376380 50376380 G A AKT1S1 Missense_Mutation p.A78V 0.28 tolerated(0.22) probably_damaging(0.972) TCGA-AD-5900-01 19 50455598 50455598 C T SIGLEC11 Missense_Mutation p.V569I 0.26 tolerated(0.63) benign(0.002) TCGA-AD-5900-01 19 50755933 50755933 T C MYH14 Missense_Mutation p.M623T 0.16 deleterious(0) possibly_damaging(0.839) TCGA-AD-5900-01 19 50909518 50909518 C T POLD1 Missense_Mutation p.T441M 0.43 tolerated(1) benign(0.008) TCGA-AD-5900-01 19 51022199 51022199 C T LRRC4B Silent p.K257K 0.24 TCGA-AD-5900-01 19 51411648 51411648 G A KLK4 Silent p.A193A 0.36 TCGA-AD-5900-01 19 51509928 51509928 C A KLK9 Silent p.P84P 0.30 TCGA-AD-5900-01 19 51512495 51512495 A G KLK9 Silent p.C48C 0.24 TCGA-AD-5900-01 19 51874921 51874921 G - NKG7 3'UTR 0.33 TCGA-AD-5900-01 19 51955721 51955721 G A SIGLEC8 Missense_Mutation p.S471L 0.27 deleterious(0.02) benign(0.091) TCGA-AD-5900-01 19 52084728 52084728 C T ZNF175 Missense_Mutation p.R53W 0.34 tolerated(0.22) benign(0.001) TCGA-AD-5900-01 19 52216660 52216660 C T HAS1 3'UTR 0.20 TCGA-AD-5900-01 19 52394930 52394930 A G ZNF649 Silent p.P153P 0.23 TCGA-AD-5900-01 19 52520370 52520370 C A ZNF614 Missense_Mutation p.G161C 0.24 deleterious(0.04) benign(0.159) TCGA-AD-5900-01 19 52529060 52529060 T C ZNF614 5'UTR 0.29 TCGA-AD-5900-01 19 52715982 52715982 C T PPP2R1A Missense_Mutation p.R183W 0.33 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 19 53302573 53302573 T C ZNF28 3'UTR 0.39 TCGA-AD-5900-01 19 544042 544042 C T GZMM 5'UTR 0.35 TCGA-AD-5900-01 19 5456809 5456809 G - ZNRF4 3'UTR 0.28 TCGA-AD-5900-01 19 54664635 54664635 C T TMC4 Silent p.V657V 0.28 TCGA-AD-5900-01 19 54722727 54722727 G T LILRB3 Intron 0.27 TCGA-AD-5900-01 19 54780706 54780706 A G LILRB2 Missense_Mutation p.F480L 0.21 tolerated(0.89) benign(0.006) TCGA-AD-5900-01 19 54871663 54871663 C T LAIR1 Silent p.P127P 0.16 TCGA-AD-5900-01 19 54969597 54969597 C T LENG8 Missense_Mutation p.R713C 0.20 deleterious(0.03) probably_damaging(0.99) TCGA-AD-5900-01 19 55399487 55399487 G T FCAR Missense_Mutation p.A159S 0.08 tolerated(0.34) benign(0.208) TCGA-AD-5900-01 19 55399671 55399671 G A FCAR Intron 0.33 TCGA-AD-5900-01 19 55450407 55450407 T A NLRP7 Missense_Mutation p.I594F 0.23 deleterious(0.01) benign(0.365) TCGA-AD-5900-01 19 55494276 55494276 G A NLRP2 Missense_Mutation p.V404M 0.39 deleterious(0.01) probably_damaging(0.971) TCGA-AD-5900-01 19 55525878 55525878 G T GP6 Missense_Mutation p.P479T 0.24 deleterious_low_confidence(0.01) benign(0.039) TCGA-AD-5900-01 19 55593943 55593943 C T EPS8L1 Missense_Mutation p.S396L 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-AD-5900-01 19 55687089 55687089 G T SYT5 Silent p.T176T 0.30 TCGA-AD-5900-01 19 55773948 55773948 G T HSPBP1 3'UTR 0.26 TCGA-AD-5900-01 19 55815036 55815036 C - BRSK1 Frame_Shift_Del p.R379Gfs*9 0.36 TCGA-AD-5900-01 19 55823533 55823533 G - BRSK1 3'UTR 0.35 TCGA-AD-5900-01 19 55899556 55899556 G - RPL28 Intron 0.12 TCGA-AD-5900-01 19 56090220 56090220 C - ZNF579 Frame_Shift_Del p.P264Rfs*141 0.39 TCGA-AD-5900-01 19 56156247 56156247 C T ZNF581 Nonsense_Mutation p.R104* 0.30 TCGA-AD-5900-01 19 56671123 56671123 G A ZNF444 Silent p.T179T 0.30 TCGA-AD-5900-01 19 56935621 56935621 C T ZNF583 Missense_Mutation p.R532C 0.24 tolerated(0.06) probably_damaging(0.997) TCGA-AD-5900-01 19 572642 572642 C T BSG Missense_Mutation p.A3V 0.16 tolerated(0.34) unknown(0) TCGA-AD-5900-01 19 57325753 57325753 G A PEG3 Missense_Mutation p.L1353F 0.29 tolerated(0.46) benign(0.137) TCGA-AD-5900-01 19 5754191 5754191 A G CATSPERD Missense_Mutation p.M405V 0.29 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 19 57641106 57641106 A - USP29 Frame_Shift_Del p.V357Sfs*21 0.24 TCGA-AD-5900-01 19 5770995 5770995 G A CATSPERD Missense_Mutation p.E559K 0.31 tolerated(0.85) benign(0.003) TCGA-AD-5900-01 19 57984692 57984692 T A ZNF772 Missense_Mutation p.R474W 0.29 deleterious(0.02) probably_damaging(1) TCGA-AD-5900-01 19 5843911 5843911 C T FUT3 Missense_Mutation p.A314T 0.27 tolerated(0.51) benign(0.022) TCGA-AD-5900-01 19 58757774 58757774 G T ZNF544 Missense_Mutation p.W47C 0.22 tolerated(0.26) benign(0.002) TCGA-AD-5900-01 19 58982800 58982800 C T ZNF324 Missense_Mutation p.A314V 0.20 tolerated(0.06) benign(0.165) TCGA-AD-5900-01 19 6417826 6417826 G A KHSRP Silent p.G335G 0.22 TCGA-AD-5900-01 19 6684650 6684650 C T C3 Missense_Mutation p.M1347I 0.08 tolerated(0.17) benign(0.001) TCGA-AD-5900-01 19 6707236 6707236 C T C3 Missense_Mutation p.R699Q 0.29 tolerated(0.43) benign(0.154) TCGA-AD-5900-01 19 6720532 6720532 A G C3 Silent p.S23S 0.17 TCGA-AD-5900-01 19 6730387 6730387 T C GPR108 Missense_Mutation p.D523G 0.21 tolerated(0.36) benign(0.002) TCGA-AD-5900-01 19 6743778 6743778 G A TRIP10 Silent p.A191A 0.29 TCGA-AD-5900-01 19 6754149 6754149 C T SH2D3A Missense_Mutation p.R433H 0.26 tolerated(0.05) benign(0.284) TCGA-AD-5900-01 19 7152850 7152850 G A INSR Silent p.A706A 0.28 TCGA-AD-5900-01 19 7166402 7166402 C T INSR Missense_Mutation p.V542M 0.21 deleterious(0) probably_damaging(0.995) TCGA-AD-5900-01 19 814661 814661 C A LPPR3 Missense_Mutation p.A230S 0.43 tolerated_low_confidence(0.87) unknown(0) TCGA-AD-5900-01 19 8196610 8196610 C T FBN3 Silent p.T606T 0.30 TCGA-AD-5900-01 19 9061431 9061431 G T MUC16 Missense_Mutation p.P8672H 0.29 unknown(0) TCGA-AD-5900-01 19 9085145 9085145 C T MUC16 Missense_Mutation p.A2224T 0.27 unknown(0) TCGA-AD-5900-01 19 9085881 9085881 G A MUC16 Silent p.G1978G 0.06 TCGA-AD-5900-01 19 9086995 9086996 - A MUC16 Frame_Shift_Ins p.W1607Lfs*13 0.26 TCGA-AD-5900-01 19 9091107 9091107 G T MUC16 Silent p.S236S 0.26 TCGA-AD-5900-01 19 9213375 9213375 G A OR7G2 Missense_Mutation p.A203V 0.28 tolerated(0.33) benign(0.03) TCGA-AD-5900-01 19 9267985 9267985 G T ZNF317 Missense_Mutation p.E68D 0.06 tolerated(0.2) benign(0.012) TCGA-AD-5900-01 19 9728847 9728847 A - ZNF561 Frame_Shift_Del p.S12Pfs*14 0.23 TCGA-AD-5900-01 1 100613758 100613758 C T TRMT13 Missense_Mutation p.R376W 0.26 deleterious(0) probably_damaging(0.913) TCGA-AD-5900-01 1 100661832 100661832 A - DBT Frame_Shift_Del p.F476Lfs*4 0.20 TCGA-AD-5900-01 1 102269682 102269682 C T OLFM3 3'UTR 0.25 TCGA-AD-5900-01 1 102269731 102269731 G T OLFM3 3'UTR 0.08 TCGA-AD-5900-01 1 102462522 102462522 A G OLFM3 5'UTR 0.32 TCGA-AD-5900-01 1 104116387 104116387 C T AMY2B Missense_Mutation p.R191C 0.03 deleterious(0) probably_damaging(0.978) TCGA-AD-5900-01 1 109261508 109261508 C T FNDC7 Silent p.S145S 0.17 TCGA-AD-5900-01 1 109883413 109883413 G A SORT1 Silent p.G399G 0.24 TCGA-AD-5900-01 1 110033990 110033990 C T ATXN7L2 Missense_Mutation p.S602L 0.21 deleterious_low_confidence(0.05) benign(0.102) TCGA-AD-5900-01 1 11007833 11007833 C - C1orf127 Frame_Shift_Del p.A787Pfs*7 0.28 TCGA-AD-5900-01 1 110996653 110996653 G A PROK1 Missense_Mutation p.R48Q 0.33 deleterious(0) probably_damaging(0.937) TCGA-AD-5900-01 1 111494787 111494787 T - LRIF1 Frame_Shift_Del p.N240Mfs*2 0.20 TCGA-AD-5900-01 1 111739807 111739807 C T DENND2D Silent p.L165L 0.30 TCGA-AD-5900-01 1 112999602 112999602 C T CTTNBP2NL Silent p.A496A 0.35 TCGA-AD-5900-01 1 113161435 113161435 C T ST7L Intron 0.11 TCGA-AD-5900-01 1 113254664 113254664 G A PPM1J Missense_Mutation p.R286W 0.23 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 1 1139612 1139612 T C TNFRSF18 Intron 0.20 TCGA-AD-5900-01 1 114362165 114362165 T - PTPN22 Intron 0.26 TCGA-AD-5900-01 1 114940225 114940233 TTTCGTTTT CG TRIM33 3'UTR 0.11 TCGA-AD-5900-01 1 114963057 114963057 A G TRIM33 Intron 0.23 TCGA-AD-5900-01 1 115829232 115829232 C T NGF Missense_Mutation p.R62H 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-AD-5900-01 1 117078661 117078662 - T CD58 Frame_Shift_Ins p.I185Nfs*6 0.28 TCGA-AD-5900-01 1 117484440 117484440 C T PTGFRN Silent p.P51P 0.33 TCGA-AD-5900-01 1 117661036 117661036 G A TRIM45 Missense_Mutation p.S281L 0.29 deleterious(0.03) benign(0.018) TCGA-AD-5900-01 1 11796206 11796206 G T AGTRAP 5'Flank 0.31 TCGA-AD-5900-01 1 120548121 120548121 C A NOTCH2 Missense_Mutation p.Q82H 0.27 tolerated(0.47) possibly_damaging(0.489) TCGA-AD-5900-01 1 12067237 12067237 A C MFN2 Missense_Mutation p.E667A 0.28 tolerated(0.32) benign(0.289) TCGA-AD-5900-01 1 120839624 120839624 G A FAM72B 5'UTR 0.18 TCGA-AD-5900-01 1 1225705 1225705 T C SCNN1D Missense_Mutation p.Y573H 0.27 tolerated(0.24) probably_damaging(0.996) TCGA-AD-5900-01 1 12954609 12954609 G A PRAMEF10 Missense_Mutation p.A225V 0.08 deleterious(0.03) possibly_damaging(0.461) TCGA-AD-5900-01 1 13001201 13001201 T C PRAMEF6 Missense_Mutation p.D161G 0.08 tolerated(0.06) probably_damaging(0.919) TCGA-AD-5900-01 1 13839553 13839553 C T LRRC38 Missense_Mutation p.R179H 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-AD-5900-01 1 14108713 14108713 G A PRDM2 Missense_Mutation p.A1475T 0.16 unknown(0) TCGA-AD-5900-01 1 14109226 14109226 G - PRDM2 Frame_Shift_Del p.P1648Qfs*14 0.31 TCGA-AD-5900-01 1 144856823 144856823 C T PDE4DIP Missense_Mutation p.G2221D 0.11 tolerated(0.09) benign(0.073) TCGA-AD-5900-01 1 145527651 145527651 C T ITGA10 Missense_Mutation p.R31C 0.31 deleterious(0) probably_damaging(0.959) TCGA-AD-5900-01 1 150315911 150315911 C A PRPF3 Missense_Mutation p.P470H 0.29 deleterious(0) probably_damaging(0.981) TCGA-AD-5900-01 1 150483606 150483606 G T ECM1 Nonsense_Mutation p.E241* 0.30 TCGA-AD-5900-01 1 150526088 150526088 C T ADAMTSL4 Silent p.N207N 0.22 TCGA-AD-5900-01 1 151090918 151090919 - T GABPB2 3'UTR 0.20 TCGA-AD-5900-01 1 151131331 151131331 G A TNFAIP8L2 Missense_Mutation p.R53Q 0.27 deleterious(0) probably_damaging(0.924) TCGA-AD-5900-01 1 151133354 151133354 G A LYSMD1 3'UTR 0.29 TCGA-AD-5900-01 1 151150502 151150502 T C VPS72 Missense_Mutation p.K228E 0.26 deleterious(0.02) benign(0.006) TCGA-AD-5900-01 1 151315061 151315062 GA - RFX5 Frame_Shift_Del p.L484Qfs*41 0.27 TCGA-AD-5900-01 1 151315510 151315510 G - RFX5 Frame_Shift_Del p.R335Gfs*6 0.24 TCGA-AD-5900-01 1 151789214 151789215 - T RORC Frame_Shift_Ins p.I75Nfs*91 0.31 TCGA-AD-5900-01 1 152005245 152005245 T C S100A11 Missense_Mutation p.S71G 0.19 tolerated(0.48) possibly_damaging(0.461) TCGA-AD-5900-01 1 152079879 152079879 T C TCHH Silent p.R1938R 0.29 TCGA-AD-5900-01 1 152187552 152187552 G A HRNR Missense_Mutation p.R2185C 0.08 unknown(0) TCGA-AD-5900-01 1 152192391 152192391 C A HRNR Missense_Mutation p.G572C 0.06 unknown(0) TCGA-AD-5900-01 1 152671781 152671781 T C LCE2A 3'UTR 0.29 TCGA-AD-5900-01 1 154918886 154918886 C T PBXIP1 Missense_Mutation p.G422R 0.22 tolerated(0.06) benign(0.208) TCGA-AD-5900-01 1 155030533 155030533 C T ADAM15 Silent p.P541P 0.34 TCGA-AD-5900-01 1 155718006 155718006 C T GON4L 3'Flank 0.23 TCGA-AD-5900-01 1 156047088 156047088 C T MEX3A Silent p.A280A 0.27 TCGA-AD-5900-01 1 1562546 1562546 G A MIB2 Missense_Mutation p.A560T 0.29 tolerated(0.28) benign(0.059) TCGA-AD-5900-01 1 156263208 156263208 G A C1orf85 Nonsense_Mutation p.R320* 0.28 TCGA-AD-5900-01 1 15635146 15635146 G A FHAD1 Missense_Mutation p.C24Y 0.34 tolerated(0.25) benign(0.058) TCGA-AD-5900-01 1 15655697 15655698 - A FHAD1 Intron 0.22 TCGA-AD-5900-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.38 TCGA-AD-5900-01 1 156843595 156843595 G A NTRK1 Missense_Mutation p.V341M 0.28 tolerated(0.25) benign(0.036) TCGA-AD-5900-01 1 157771856 157771856 C A FCRL1 Missense_Mutation p.E245D 0.26 deleterious(0.04) possibly_damaging(0.734) TCGA-AD-5900-01 1 158450510 158450510 G A OR10R2 Silent p.R281R 0.07 TCGA-AD-5900-01 1 158669503 158669503 A - OR6K2 Frame_Shift_Del p.S314Pfs*2 0.23 TCGA-AD-5900-01 1 158724760 158724760 G A OR6K6 Missense_Mutation p.G52D 0.05 tolerated(0.17) benign(0.147) TCGA-AD-5900-01 1 15899935 15899935 T - AGMAT 3'UTR 0.84 TCGA-AD-5900-01 1 160001229 160001229 T G PIGM Missense_Mutation p.S101R 0.09 tolerated(0.23) benign(0.129) TCGA-AD-5900-01 1 161011524 161011524 C - USF1 Frame_Shift_Del p.G130Vfs*33 0.29 TCGA-AD-5900-01 1 161071913 161071913 G A PFDN2 Silent p.Y71Y 0.29 TCGA-AD-5900-01 1 161695810 161695810 G A FCRLB Silent p.S169S 0.27 TCGA-AD-5900-01 1 16257918 16257918 C T SPEN Missense_Mutation p.P1728L 0.36 benign(0) TCGA-AD-5900-01 1 162745517 162745517 T C DDR2 Silent p.C644C 0.30 TCGA-AD-5900-01 1 16378297 16378297 G - CLCNKB Frame_Shift_Del p.Y466Mfs*13 0.28 TCGA-AD-5900-01 1 1650795 1650795 A G CDK11A Silent p.C109C 0.17 TCGA-AD-5900-01 1 165648770 165648770 C T ALDH9A1 Missense_Mutation p.G280E 0.28 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 1 165859446 165859446 C T UCK2 Silent p.S35S 0.27 TCGA-AD-5900-01 1 170135789 170135789 G A METTL11B Silent p.L159L 0.25 TCGA-AD-5900-01 1 17280775 17280775 C T CROCC Missense_Mutation p.R1082W 0.27 probably_damaging(0.921) TCGA-AD-5900-01 1 173950091 173950091 G T RC3H1 Silent p.T275T 0.07 TCGA-AD-5900-01 1 175063369 175063369 C T TNN Missense_Mutation p.A523V 0.07 tolerated(0.07) benign(0.12) TCGA-AD-5900-01 1 17570617 17570617 G A PADI1 Missense_Mutation p.G624D 0.29 deleterious(0.03) probably_damaging(1) TCGA-AD-5900-01 1 176563777 176563777 G A PAPPA2 Missense_Mutation p.R346H 0.35 deleterious(0.03) benign(0.212) TCGA-AD-5900-01 1 179077894 179077894 T - ABL2 Frame_Shift_Del p.K836Nfs*34 0.28 TCGA-AD-5900-01 1 179609014 179609014 A G TDRD5 Missense_Mutation p.M521V 0.06 tolerated(0.13) benign(0.3) TCGA-AD-5900-01 1 179965890 179965890 C T CEP350 Nonsense_Mutation p.R200* 0.31 TCGA-AD-5900-01 1 179989598 179989598 C T CEP350 Silent p.L897L 0.29 TCGA-AD-5900-01 1 18023747 18023747 G A ARHGEF10L Missense_Mutation p.V1238M 0.37 deleterious(0.01) benign(0.061) TCGA-AD-5900-01 1 182554796 182554796 C - RNASEL Frame_Shift_Del p.F383Sfs*7 0.20 TCGA-AD-5900-01 1 182555766 182555766 C T RNASEL Missense_Mutation p.G59D 0.27 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 1 186386686 186386688 TTC - C1orf27 In_Frame_Del p.S401del 0.32 TCGA-AD-5900-01 1 18810703 18810703 C T KLHDC7A 3'UTR 0.08 TCGA-AD-5900-01 1 1919975 1919975 T C C1orf222 Missense_Mutation p.Q82R 0.28 deleterious(0.03) possibly_damaging(0.607) TCGA-AD-5900-01 1 19472402 19472402 C T UBR4 Silent p.P2610P 0.27 TCGA-AD-5900-01 1 19566920 19566920 C T EMC1 Nonsense_Mutation p.W219* 0.33 TCGA-AD-5900-01 1 196758869 196758869 C T CFHR3 Intron 0.31 TCGA-AD-5900-01 1 197890479 197890479 C T LHX9 Silent p.S141S 0.28 TCGA-AD-5900-01 1 198721836 198721837 - C PTPRC Frame_Shift_Ins p.Q1150Pfs*6 0.21 TCGA-AD-5900-01 1 20005479 20005479 C T HTR6 Missense_Mutation p.T314I 0.23 deleterious(0) probably_damaging(0.972) TCGA-AD-5900-01 1 201687683 201687683 G A NAV1 Silent p.T342T 0.24 TCGA-AD-5900-01 1 202245516 202245516 G A LGR6 Missense_Mutation p.D171N 0.34 tolerated(0.11) probably_damaging(1) TCGA-AD-5900-01 1 203098027 203098027 G A ADORA1 Missense_Mutation p.A20T 0.32 deleterious(0) benign(0.074) TCGA-AD-5900-01 1 203186053 203186053 C T CHIT1 Silent p.V455V 0.26 TCGA-AD-5900-01 1 204083516 204083516 C T SOX13 Missense_Mutation p.S96F 0.29 deleterious(0.01) benign(0.24) TCGA-AD-5900-01 1 204085749 204085749 C T SOX13 Missense_Mutation p.A178V 0.29 deleterious(0) probably_damaging(0.936) TCGA-AD-5900-01 1 204170802 204170804 GAG - GOLT1A In_Frame_Del p.L85del 0.35 TCGA-AD-5900-01 1 204226908 204226908 G A PLEKHA6 Missense_Mutation p.P366L 0.22 tolerated(0.07) benign(0.315) TCGA-AD-5900-01 1 205042285 205042285 C T CNTN2 Silent p.G978G 0.23 TCGA-AD-5900-01 1 205117394 205117395 - T DSTYK Frame_Shift_Ins p.L848Afs*3 0.21 TCGA-AD-5900-01 1 20517653 20517653 T C UBXN10 Missense_Mutation p.L200P 0.19 deleterious(0) probably_damaging(0.993) TCGA-AD-5900-01 1 205631216 205631216 C T SLC45A3 Missense_Mutation p.A333T 0.34 tolerated(0.27) benign(0.018) TCGA-AD-5900-01 1 205892473 205892473 A C SLC26A9 Missense_Mutation p.V550G 0.23 deleterious(0) probably_damaging(0.945) TCGA-AD-5900-01 1 207870983 207870983 C T CR1L Missense_Mutation p.T333I 0.27 tolerated(0.06) possibly_damaging(0.637) TCGA-AD-5900-01 1 208315769 208315769 C T PLXNA2 Missense_Mutation p.E471K 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-AD-5900-01 1 208390184 208390184 C T PLXNA2 Missense_Mutation p.A362T 0.28 tolerated(0.46) benign(0.001) TCGA-AD-5900-01 1 208391071 208391071 G A PLXNA2 Missense_Mutation p.A66V 0.28 deleterious(0) probably_damaging(0.986) TCGA-AD-5900-01 1 20972103 20972103 G A PINK1 Missense_Mutation p.R337H 0.17 tolerated(0.08) benign(0.104) TCGA-AD-5900-01 1 210407341 210407341 A T SERTAD4 Intron 0.42 TCGA-AD-5900-01 1 210407342 210407342 A T SERTAD4 Intron 0.25 TCGA-AD-5900-01 1 21044101 21044101 C T KIF17 Silent p.A33A 0.37 TCGA-AD-5900-01 1 211192509 211192509 A - KCNH1 Frame_Shift_Del p.F216Lfs*10 0.26 TCGA-AD-5900-01 1 211842532 211842532 A G NEK2 Missense_Mutation p.L303S 0.07 tolerated(0.43) benign(0.001) TCGA-AD-5900-01 1 212798307 212798307 C T FAM71A Nonsense_Mutation p.R30* 0.28 TCGA-AD-5900-01 1 212955712 212955712 A G NSL1 Splice_Site p.X167_splice 0.06 TCGA-AD-5900-01 1 215256664 215256664 C T KCNK2 5'UTR 0.23 TCGA-AD-5900-01 1 215768773 215768773 G T KCTD3 Missense_Mutation p.G298V 0.34 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 1 220156132 220156132 G A EPRS Missense_Mutation p.R1119C 0.07 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 1 22056235 22056235 T C USP48 Missense_Mutation p.Q421R 0.29 tolerated(0.23) benign(0.002) TCGA-AD-5900-01 1 22178591 22178591 G A HSPG2 Missense_Mutation p.A2287V 0.21 possibly_damaging(0.72) TCGA-AD-5900-01 1 222713383 222713383 A G HHIPL2 Silent p.Y473Y 0.28 TCGA-AD-5900-01 1 22310264 22310264 C A CELA3B Missense_Mutation p.A147D 0.07 deleterious(0.04) possibly_damaging(0.824) TCGA-AD-5900-01 1 224418928 224418929 - T NVL Frame_Shift_Ins p.D843Gfs*6 0.23 TCGA-AD-5900-01 1 226925111 226925111 C A ITPKB Missense_Mutation p.A17S 0.45 tolerated_low_confidence(0.28) benign(0.423) TCGA-AD-5900-01 1 228109359 228109359 C T WNT9A Missense_Mutation p.E320K 0.24 deleterious(0.01) possibly_damaging(0.589) TCGA-AD-5900-01 1 228474494 228474494 C T OBSCN Missense_Mutation p.R3529W 0.25 benign(0.066) TCGA-AD-5900-01 1 228527715 228527715 G A OBSCN Silent p.A6733A 0.26 TCGA-AD-5900-01 1 228547776 228547777 AG - OBSCN Intron 0.47 TCGA-AD-5900-01 1 229661732 229661732 G A ABCB10 Silent p.F619F 0.09 TCGA-AD-5900-01 1 229729925 229729925 C A TAF5L 3'UTR 0.12 TCGA-AD-5900-01 1 231359896 231359896 T - C1orf131 3'UTR 0.27 TCGA-AD-5900-01 1 231471418 231471418 T C EXOC8 Missense_Mutation p.R692G 0.25 deleterious(0.02) possibly_damaging(0.786) TCGA-AD-5900-01 1 232941035 232941035 A - MAP10 Frame_Shift_Del p.N90Tfs*32 0.21 TCGA-AD-5900-01 1 233767004 233767004 C T KCNK1 Intron 0.20 TCGA-AD-5900-01 1 2337996 2337996 C T PEX10 Missense_Mutation p.R300H 0.08 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 1 236189411 236189411 G A NID1 Missense_Mutation p.T590M 0.17 deleterious(0) possibly_damaging(0.52) TCGA-AD-5900-01 1 236717913 236717913 C T HEATR1 Missense_Mutation p.M2021I 0.08 tolerated(0.3) benign(0.017) TCGA-AD-5900-01 1 23768165 23768165 C T ASAP3 Missense_Mutation p.A244T 0.26 tolerated(0.14) benign(0.391) TCGA-AD-5900-01 1 237754082 237754082 C T RYR2 Missense_Mutation p.T1317M 0.22 benign(0.022) TCGA-AD-5900-01 1 237791188 237791188 C A RYR2 Missense_Mutation p.A2083D 0.28 possibly_damaging(0.677) TCGA-AD-5900-01 1 244527994 244527994 C A C1orf100 5'UTR 0.22 TCGA-AD-5900-01 1 245006670 245006670 T A COX20 3'UTR 0.38 TCGA-AD-5900-01 1 246711869 246711869 G A TFB2M Missense_Mutation p.P279L 0.32 tolerated(0.45) benign(0.002) TCGA-AD-5900-01 1 247463817 247463817 A G ZNF496 3'UTR 0.32 TCGA-AD-5900-01 1 247582217 247582217 C A NLRP3 Missense_Mutation p.L41I 0.30 tolerated(1) benign(0.123) TCGA-AD-5900-01 1 247587420 247587420 G - NLRP3 Frame_Shift_Del p.A227Rfs*13 0.27 TCGA-AD-5900-01 1 248031320 248031320 G A TRIM58 Missense_Mutation p.A276T 0.29 tolerated(0.63) benign(0.002) TCGA-AD-5900-01 1 24861883 24861883 T C RCAN3 3'UTR 0.26 TCGA-AD-5900-01 1 248685749 248685749 A - OR2G6 Frame_Shift_Del p.N269Tfs*12 0.23 TCGA-AD-5900-01 1 248756996 248756996 C T OR2T10 Missense_Mutation p.G25D 0.36 tolerated(0.45) benign(0.065) TCGA-AD-5900-01 1 2522495 2522495 G A MMEL1 Silent p.F758F 0.27 TCGA-AD-5900-01 1 25573091 25573091 G A C1orf63 Missense_Mutation p.R122W 0.21 deleterious(0) unknown(0) TCGA-AD-5900-01 1 26153204 26153204 G T MTFR1L Missense_Mutation p.R113M 0.09 deleterious(0) possibly_damaging(0.575) TCGA-AD-5900-01 1 26596088 26596090 CTC - CEP85 In_Frame_Del p.S546del 0.32 TCGA-AD-5900-01 1 26650683 26650683 C T AIM1L Missense_Mutation p.S692N 0.27 tolerated(0.11) probably_damaging(0.998) TCGA-AD-5900-01 1 27189638 27189639 AC - SFN 5'UTR 0.24 TCGA-AD-5900-01 1 28920980 28920980 C T RAB42 3'UTR 0.28 TCGA-AD-5900-01 1 29023494 29023494 A G GMEB1 Missense_Mutation p.N176D 0.25 deleterious(0.01) possibly_damaging(0.714) TCGA-AD-5900-01 1 29069012 29069013 - G YTHDF2 Frame_Shift_Ins p.D80* 0.32 TCGA-AD-5900-01 1 29070190 29070190 G A YTHDF2 Missense_Mutation p.V470M 0.30 tolerated(0.47) possibly_damaging(0.852) TCGA-AD-5900-01 1 29314328 29314328 A G EPB41 Missense_Mutation p.I127V 0.28 tolerated(0.65) benign(0.103) TCGA-AD-5900-01 1 31742184 31742184 G T SNRNP40 Intron 0.29 TCGA-AD-5900-01 1 32192965 32192965 G T BAI2 3'UTR 0.25 TCGA-AD-5900-01 1 32222344 32222344 C T BAI2 Missense_Mutation p.A32T 0.27 tolerated(0.13) possibly_damaging(0.542) TCGA-AD-5900-01 1 32256280 32256280 G - SPOCD1 Frame_Shift_Del p.P1192Lfs*36 0.09 TCGA-AD-5900-01 1 32657979 32657979 C T TXLNA Missense_Mutation p.A344V 0.26 deleterious(0.03) possibly_damaging(0.837) TCGA-AD-5900-01 1 33263371 33263371 G A YARS Missense_Mutation p.A195V 0.31 deleterious(0) possibly_damaging(0.703) TCGA-AD-5900-01 1 33646644 33646644 G A TRIM62 Silent p.D130D 0.12 TCGA-AD-5900-01 1 33820159 33820159 C A PHC2 Missense_Mutation p.Q466H 0.29 tolerated(0.07) benign(0.004) TCGA-AD-5900-01 1 3382700 3382703 TCTT - ARHGEF16 Intron 0.33 TCGA-AD-5900-01 1 36359342 36359342 C T AGO1 Missense_Mutation p.R194C 0.28 deleterious(0.03) probably_damaging(0.967) TCGA-AD-5900-01 1 36605395 36605395 T C TRAPPC3 Missense_Mutation p.I56V 0.23 tolerated(0.29) benign(0.007) TCGA-AD-5900-01 1 36639077 36639077 C T MAP7D1 Missense_Mutation p.T246I 0.28 benign(0.439) TCGA-AD-5900-01 1 36889004 36889004 C A OSCP1 Missense_Mutation p.G194W 0.18 deleterious(0) probably_damaging(0.975) TCGA-AD-5900-01 1 36941051 36941051 C A CSF3R Missense_Mutation p.Q96H 0.22 tolerated(0.29) benign(0) TCGA-AD-5900-01 1 3731926 3731926 G A CEP104 3'UTR 0.36 TCGA-AD-5900-01 1 38511620 38511620 G A POU3F1 Missense_Mutation p.R266C 0.29 deleterious(0) probably_damaging(0.99) TCGA-AD-5900-01 1 39876198 39876198 A G KIAA0754 5'UTR 0.27 TCGA-AD-5900-01 1 40098380 40098380 C T HEYL Missense_Mutation p.A30T 0.33 tolerated(0.28) benign(0.231) TCGA-AD-5900-01 1 40125052 40125052 C T NT5C1A Missense_Mutation p.R283H 0.24 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 1 40228230 40228230 A - PPIE Frame_Shift_Del p.N295Tfs*46 0.23 TCGA-AD-5900-01 1 41236312 41236312 G A NFYC Intron 0.30 TCGA-AD-5900-01 1 42047532 42047532 G A HIVEP3 Silent p.P979P 0.25 TCGA-AD-5900-01 1 42048982 42048982 C A HIVEP3 Missense_Mutation p.S496I 0.31 probably_damaging(0.997) TCGA-AD-5900-01 1 43205543 43205543 G A CLDN19 Silent p.C64C 0.28 TCGA-AD-5900-01 1 43396840 43396840 C T SLC2A1 Missense_Mutation p.R51H 0.32 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 1 43778815 43778815 C - TIE1 Frame_Shift_Del p.R648Dfs*15 0.28 TCGA-AD-5900-01 1 43898812 43898812 C T SZT2 Missense_Mutation p.L1862F 0.23 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 1 44450593 44450593 G A B4GALT2 Silent p.A231A 0.27 TCGA-AD-5900-01 1 44584621 44584621 G A KLF17 Silent p.G14G 0.30 TCGA-AD-5900-01 1 44804833 44804833 C T ERI3 Missense_Mutation p.A125T 0.26 tolerated(0.12) benign(0.003) TCGA-AD-5900-01 1 46033564 46033564 T C AKR1A1 Intron 0.37 TCGA-AD-5900-01 1 46049748 46049748 C A NASP 5'UTR 0.14 TCGA-AD-5900-01 1 46744870 46744871 AG - LRRC41 Frame_Shift_Del p.C735Sfs*61 0.23 TCGA-AD-5900-01 1 50956266 50956266 T G FAF1 Missense_Mutation p.E549D 0.24 tolerated(0.11) benign(0.057) TCGA-AD-5900-01 1 52520880 52520880 T - TXNDC12 5'UTR 0.39 TCGA-AD-5900-01 1 53925109 53925109 C T DMRTB1 5'UTR 0.31 TCGA-AD-5900-01 1 54273361 54273361 A G NDC1 Missense_Mutation p.S287P 0.05 deleterious(0.03) possibly_damaging(0.864) TCGA-AD-5900-01 1 57373787 57373787 G A C8A Splice_Site p.X460_splice 0.05 TCGA-AD-5900-01 1 60073488 60073488 C T FGGY Missense_Mutation p.P306L 0.27 deleterious(0) benign(0.127) TCGA-AD-5900-01 1 60370606 60370606 G A CYP2J2 Silent p.I376I 0.27 TCGA-AD-5900-01 1 63790507 63790507 A - FOXD3 3'UTR 0.17 TCGA-AD-5900-01 1 63902812 63902812 G T ALG6 3'UTR 0.29 TCGA-AD-5900-01 1 6585790 6585790 A - NOL9 3'UTR 0.22 TCGA-AD-5900-01 1 65874392 65874392 A - DNAJC6 Frame_Shift_Del p.K855Rfs*6 0.19 TCGA-AD-5900-01 1 67391832 67391832 G T MIER1 Silent p.V25V 0.29 TCGA-AD-5900-01 1 74670507 74670507 C T FPGT Missense_Mutation p.A259V 0.06 tolerated(0.28) benign(0.004) TCGA-AD-5900-01 1 76198536 76198536 A G ACADM Splice_Site p.X77_splice 0.26 TCGA-AD-5900-01 1 7725175 7725175 G A CAMTA1 Silent p.S856S 0.30 TCGA-AD-5900-01 1 78097750 78097750 A G ZZZ3 Silent p.P430P 0.22 TCGA-AD-5900-01 1 78340863 78340863 A - FAM73A 3'UTR 0.32 TCGA-AD-5900-01 1 8420845 8420845 G A RERE Nonsense_Mutation p.Q908* 0.20 TCGA-AD-5900-01 1 86847991 86847991 A G ODF2L Silent p.H186H 0.23 TCGA-AD-5900-01 1 86959253 86959253 G A CLCA1 Missense_Mutation p.A551T 0.23 deleterious(0.04) benign(0.09) TCGA-AD-5900-01 1 879180 879180 C T SAMD11 Missense_Mutation p.R598W 0.28 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 1 89401885 89401885 C A CCBL2 Missense_Mutation p.W449L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-AD-5900-01 1 89426913 89426914 GT - CCBL2 Frame_Shift_Del p.C243Hfs*4 0.27 TCGA-AD-5900-01 1 89448234 89448234 C T RBMXL1 3'UTR 0.29 TCGA-AD-5900-01 1 89729563 89729563 C T GBP5 Silent p.S406S 0.29 TCGA-AD-5900-01 1 914779 914779 A G C1orf170 Missense_Mutation p.V450A 0.27 tolerated(0.06) probably_damaging(0.978) TCGA-AD-5900-01 1 92327066 92327066 G A TGFBR3 Missense_Mutation p.A8V 0.22 tolerated(0.28) benign(0.001) TCGA-AD-5900-01 1 93091457 93091457 G A EVI5 Missense_Mutation p.A505V 0.24 tolerated(0.15) benign(0.01) TCGA-AD-5900-01 1 94337679 94337679 C T DNTTIP2 Silent p.P672P 0.25 TCGA-AD-5900-01 1 94522379 94522379 C T ABCA4 Splice_Site p.X721_splice 0.23 TCGA-AD-5900-01 1 94564521 94564521 C T ABCA4 Silent p.A199A 0.65 TCGA-AD-5900-01 1 9613739 9613739 C T SLC25A33 Missense_Mutation p.R38W 0.29 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 1 9795196 9795197 - G CLSTN1 Frame_Shift_Ins p.V641Gfs*29 0.25 TCGA-AD-5900-01 20 13279911 13279911 G A ISM1 Silent p.A400A 0.14 TCGA-AD-5900-01 20 14306094 14306094 T - FLRT3 3'UTR 0.10 TCGA-AD-5900-01 20 16030706 16030706 A - MACROD2 3'UTR 0.30 TCGA-AD-5900-01 20 17605259 17605259 C T RRBP1 Missense_Mutation p.A604T 0.26 tolerated(0.58) possibly_damaging(0.682) TCGA-AD-5900-01 20 18513345 18513345 C A SEC23B Missense_Mutation p.P424Q 0.20 tolerated(0.08) probably_damaging(0.913) TCGA-AD-5900-01 20 19701833 19701833 G A SLC24A3 3'UTR 0.23 TCGA-AD-5900-01 20 23016359 23016359 C T SSTR4 Missense_Mutation p.T80M 0.21 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 20 25274843 25274843 G A PYGB Missense_Mutation p.V743M 0.21 tolerated(0.27) benign(0.155) TCGA-AD-5900-01 20 2688610 2688611 - A EBF4 Frame_Shift_Ins p.Q141Tfs*15 0.12 TCGA-AD-5900-01 20 2841719 2841719 T C VPS16 Missense_Mutation p.M245T 0.23 tolerated(0.32) benign(0.013) TCGA-AD-5900-01 20 3053021 3053021 C T OXT Missense_Mutation p.A112V 0.20 tolerated(1) benign(0.004) TCGA-AD-5900-01 20 309046 309046 G A SOX12 3'UTR 0.06 TCGA-AD-5900-01 20 31041378 31041378 C T C20orf112 Splice_Site p.X191_splice 0.04 TCGA-AD-5900-01 20 32663785 32663785 C T RALY Silent p.N161N 0.21 TCGA-AD-5900-01 20 33530668 33530668 A - GSS Intron 0.32 TCGA-AD-5900-01 20 33586407 33586407 G A MYH7B Missense_Mutation p.R1365Q 0.38 benign(0.324) TCGA-AD-5900-01 20 3363134 3363134 C T C20orf194 Missense_Mutation p.V35I 0.09 tolerated(0.32) benign(0.003) TCGA-AD-5900-01 20 34116759 34116759 A G C20orf173 Intron 0.23 TCGA-AD-5900-01 20 34241725 34241725 T C RBM12 Missense_Mutation p.K507R 0.22 tolerated(0.75) benign(0.24) TCGA-AD-5900-01 20 34487476 34487476 G A PHF20 Silent p.P489P 0.19 TCGA-AD-5900-01 20 3541484 3541484 T C ATRN Missense_Mutation p.V460A 0.04 tolerated(0.11) benign(0.115) TCGA-AD-5900-01 20 35422823 35422824 - C SOGA1 Frame_Shift_Ins p.D1221Gfs*26 0.36 TCGA-AD-5900-01 20 36361416 36361416 A - CTNNBL1 Frame_Shift_Del p.R58Gfs*25 0.23 TCGA-AD-5900-01 20 3674140 3674141 - G SIGLEC1 Frame_Shift_Ins p.G1155Wfs*82 0.35 TCGA-AD-5900-01 20 36854123 36854123 C T KIAA1755 Missense_Mutation p.A705T 0.24 tolerated(0.59) benign(0.005) TCGA-AD-5900-01 20 36992652 36992652 G A LBP Missense_Mutation p.A226T 0.50 tolerated(0.13) benign(0.086) TCGA-AD-5900-01 20 3730747 3730747 G A HSPA12B Missense_Mutation p.E392K 0.46 deleterious(0) probably_damaging(0.993) TCGA-AD-5900-01 20 39317119 39317119 G A MAFB Silent p.F124F 0.14 TCGA-AD-5900-01 20 39832224 39832224 G - ZHX3 Frame_Shift_Del p.L445Sfs*3 0.22 TCGA-AD-5900-01 20 40735467 40735467 G A PTPRT Missense_Mutation p.R1117C 0.39 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 20 42143743 42143743 C A L3MBTL1 Silent p.A177A 0.11 TCGA-AD-5900-01 20 43739049 43739049 G T WFDC5 Missense_Mutation p.P120H 0.19 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 20 43995703 43995703 G A SYS1 Missense_Mutation p.R140Q 0.22 deleterious(0.03) possibly_damaging(0.693) TCGA-AD-5900-01 20 44038606 44038606 G A DBNDD2 Silent p.P206P 0.21 TCGA-AD-5900-01 20 44162971 44162971 G A WFDC6 3'UTR 0.24 TCGA-AD-5900-01 20 44513007 44513007 T C ZSWIM1 3'UTR 0.35 TCGA-AD-5900-01 20 44513008 44513008 T C ZSWIM1 3'UTR 0.11 TCGA-AD-5900-01 20 44691133 44691133 G A NCOA5 Silent p.L516L 0.25 TCGA-AD-5900-01 20 44757521 44757522 - C CD40 Frame_Shift_Ins p.H228Pfs*79 0.28 TCGA-AD-5900-01 20 47990802 47990802 C T KCNB1 Missense_Mutation p.R432Q 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-AD-5900-01 20 49366458 49366458 T C PARD6B Silent p.H184H 0.24 TCGA-AD-5900-01 20 50768533 50768533 G A ZFP64 3'UTR 0.46 TCGA-AD-5900-01 20 56735727 56735727 C - C20orf85 Frame_Shift_Del p.P90Qfs*19 0.40 TCGA-AD-5900-01 20 57036348 57036348 C T APCDD1L Missense_Mutation p.R335H 0.34 tolerated(0.91) benign(0.01) TCGA-AD-5900-01 20 57475134 57475134 G T GNAS Intron 0.48 TCGA-AD-5900-01 20 57485765 57485765 C T GNAS Missense_Mutation p.R999C 0.21 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 20 58581780 58581780 G A CDH26 Missense_Mutation p.A745T 0.41 tolerated(0.57) benign(0.003) TCGA-AD-5900-01 20 60885968 60885968 C T LAMA5 Missense_Mutation p.R3424H 0.33 benign(0.2) TCGA-AD-5900-01 20 60901751 60901751 C T LAMA5 Silent p.G1760G 0.22 TCGA-AD-5900-01 20 61461028 61461028 G A COL9A3 Missense_Mutation p.V368I 0.30 tolerated(1) benign(0.058) TCGA-AD-5900-01 20 61488943 61488943 G A TCFL5 Missense_Mutation p.R348C 0.18 tolerated(0.06) possibly_damaging(0.891) TCGA-AD-5900-01 20 62178752 62178752 G A SRMS Missense_Mutation p.A22V 0.38 tolerated(0.38) benign(0.001) TCGA-AD-5900-01 20 62319100 62319100 C A RTEL1 Silent p.S510S 0.25 TCGA-AD-5900-01 20 62654198 62654198 G A PRPF6 Missense_Mutation p.R579H 0.17 deleterious(0) possibly_damaging(0.84) TCGA-AD-5900-01 20 62705341 62705341 G A RGS19 Silent p.S173S 0.51 TCGA-AD-5900-01 20 62729848 62729848 C T OPRL1 Missense_Mutation p.A270V 0.06 tolerated(0.05) benign(0.057) TCGA-AD-5900-01 20 62737363 62737363 C T NPBWR2 Silent p.T274T 0.14 TCGA-AD-5900-01 20 62836917 62836918 - C MYT1 Frame_Shift_Ins p.L56Pfs*11 0.21 TCGA-AD-5900-01 20 62891516 62891516 G A PCMTD2 Silent p.P66P 0.19 TCGA-AD-5900-01 20 629471 629471 G A SRXN1 Missense_Mutation p.R101C 0.53 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 20 825500 825500 G A FAM110A Missense_Mutation p.C18Y 0.41 deleterious(0.01) benign(0) TCGA-AD-5900-01 21 31691796 31691796 C A KRTAP26-1 Silent p.L186L 0.10 TCGA-AD-5900-01 21 31692296 31692296 G A KRTAP26-1 Missense_Mutation p.R20C 0.30 tolerated(1) benign(0) TCGA-AD-5900-01 21 31914122 31914122 G T KRTAP19-6 Missense_Mutation p.L11M 0.30 deleterious_low_confidence(0) unknown(0) TCGA-AD-5900-01 21 33032189 33032189 G A SOD1 Intron 0.29 TCGA-AD-5900-01 21 33651204 33651204 C T MIS18A Missense_Mutation p.R41H 0.33 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-AD-5900-01 21 33954543 33954543 C T AP000275.65 Silent p.A283A 0.24 TCGA-AD-5900-01 21 34804640 34804640 G C IFNGR2 Missense_Mutation p.D240H 0.20 deleterious(0.01) probably_damaging(0.945) TCGA-AD-5900-01 21 35474994 35474994 G A SLC5A3 3'UTR 0.24 TCGA-AD-5900-01 21 35772104 35772104 G T C21orf140 3'Flank 0.30 TCGA-AD-5900-01 21 41034349 41034349 T C B3GALT5 3'UTR 0.33 TCGA-AD-5900-01 21 43319369 43319369 C T C2CD2 Missense_Mutation p.A555T 0.34 tolerated(0.55) benign(0.007) TCGA-AD-5900-01 21 43771138 43771139 - C TFF2 5'UTR 0.31 TCGA-AD-5900-01 21 43803176 43803176 G A TMPRSS3 Silent p.L250L 0.12 TCGA-AD-5900-01 21 43913176 43913176 C - RSPH1 Frame_Shift_Del p.G23Vfs*120 0.40 TCGA-AD-5900-01 21 44323568 44323568 C T NDUFV3 Missense_Mutation p.T149M 0.28 tolerated(0.06) possibly_damaging(0.882) TCGA-AD-5900-01 21 45497590 45497590 C T TRAPPC10 Missense_Mutation p.T465I 0.28 deleterious(0) benign(0.197) TCGA-AD-5900-01 21 45502749 45502749 G A TRAPPC10 Missense_Mutation p.V602M 0.32 tolerated(0.13) benign(0.044) TCGA-AD-5900-01 21 46320316 46320316 G A ITGB2 Silent p.D272D 0.33 TCGA-AD-5900-01 21 46326852 46326852 T - ITGB2 Frame_Shift_Del p.V103* 0.36 TCGA-AD-5900-01 21 47361602 47361602 C T PCBP3 Silent p.T366T 0.36 TCGA-AD-5900-01 21 47628165 47628165 C A LSS Missense_Mutation p.K439N 0.36 deleterious(0) possibly_damaging(0.771) TCGA-AD-5900-01 21 47655322 47655322 G A MCM3AP Nonsense_Mutation p.Q1935* 0.33 TCGA-AD-5900-01 21 47773040 47773040 G A PCNT Silent p.A493A 0.27 TCGA-AD-5900-01 21 47776939 47776939 G A PCNT Missense_Mutation p.D663N 0.25 benign(0) TCGA-AD-5900-01 21 47836077 47836077 A G PCNT Missense_Mutation p.Y2082C 0.19 benign(0.091) TCGA-AD-5900-01 22 17590404 17590404 G - IL17RA Frame_Shift_Del p.G767Afs*70 0.29 TCGA-AD-5900-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.33 TCGA-AD-5900-01 22 19208953 19208953 G - CLTCL1 Frame_Shift_Del p.H915Ifs*56 0.37 TCGA-AD-5900-01 22 21742908 21742908 G - RIMBP3B Frame_Shift_Del p.G1589Afs*9 0.14 TCGA-AD-5900-01 22 22042383 22042383 G T PPIL2 Missense_Mutation p.G337C 0.30 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 22 23040415 23040415 C T IGLV2-23 5'UTR 0.36 TCGA-AD-5900-01 22 24106835 24106835 A T C22orf15 Missense_Mutation p.D87V 0.08 deleterious(0.03) benign(0.168) TCGA-AD-5900-01 22 24580147 24580147 G T SUSD2 Silent p.V161V 0.29 TCGA-AD-5900-01 22 24640565 24640565 G A GGT5 Silent p.H43H 0.24 TCGA-AD-5900-01 22 25750632 25750632 G A LRP5L Missense_Mutation p.R196W 0.36 deleterious(0) probably_damaging(0.992) TCGA-AD-5900-01 22 25755985 25755985 C T LRP5L Silent p.A25A 0.35 TCGA-AD-5900-01 22 26688610 26688610 C T SEZ6L Silent p.H111H 0.24 TCGA-AD-5900-01 22 26706641 26706641 C T SEZ6L Missense_Mutation p.T507M 0.28 tolerated(0.64) benign(0.017) TCGA-AD-5900-01 22 30200649 30200649 G A ASCC2 Missense_Mutation p.P444L 0.24 tolerated(0.72) benign(0.001) TCGA-AD-5900-01 22 30414048 30414048 C - MTMR3 Frame_Shift_Del p.L605* 0.35 TCGA-AD-5900-01 22 30659930 30659930 C A OSM Missense_Mutation p.R234M 0.24 deleterious(0) probably_damaging(0.956) TCGA-AD-5900-01 22 30736271 30736271 C T SF3A1 Missense_Mutation p.R430H 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-AD-5900-01 22 30857300 30857300 C T SEC14L3 Missense_Mutation p.V360I 0.22 tolerated(0.43) possibly_damaging(0.796) TCGA-AD-5900-01 22 31331065 31331065 C T MORC2 Silent p.L570L 0.22 TCGA-AD-5900-01 22 31536041 31536041 G - PLA2G3 Frame_Shift_Del p.G101Dfs*252 0.39 TCGA-AD-5900-01 22 32081449 32081453 AAAAC - PRR14L 3'UTR 0.18 TCGA-AD-5900-01 22 32629009 32629009 G A SLC5A4 Missense_Mutation p.R300C 0.34 deleterious(0) benign(0.344) TCGA-AD-5900-01 22 32924896 32924896 G A SYN3 Missense_Mutation p.P399S 0.23 tolerated(0.49) unknown(0) TCGA-AD-5900-01 22 35799502 35799502 G A MCM5 Silent p.S130S 0.37 TCGA-AD-5900-01 22 36688070 36688070 C T MYH9 Missense_Mutation p.A1436T 0.23 benign(0.105) TCGA-AD-5900-01 22 37273718 37273718 G - NCF4 3'UTR 0.27 TCGA-AD-5900-01 22 38042923 38042923 G A SH3BP1 Silent p.P341P 0.33 TCGA-AD-5900-01 22 38087245 38087245 C T NOL12 Nonsense_Mutation p.R182* 0.08 TCGA-AD-5900-01 22 38109264 38109264 C - TRIOBP Frame_Shift_Del p.R103Gfs*16 0.23 TCGA-AD-5900-01 22 38516825 38516825 C A PLA2G6 Missense_Mutation p.E561D 0.13 tolerated(0.13) benign(0.032) TCGA-AD-5900-01 22 38823018 38823018 C T KCNJ4 Missense_Mutation p.E374K 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-AD-5900-01 22 38890056 38890056 T C DDX17 Missense_Mutation p.D432G 0.11 deleterious(0) probably_damaging(0.954) TCGA-AD-5900-01 22 39124115 39124115 G C GTPBP1 Missense_Mutation p.Q555H 0.25 tolerated(0.06) benign(0.049) TCGA-AD-5900-01 22 39418983 39418983 G A APOBEC3D Silent p.P58P 0.32 TCGA-AD-5900-01 22 39824169 39824169 G A TAB1 Missense_Mutation p.A430T 0.26 tolerated(0.72) benign(0.003) TCGA-AD-5900-01 22 40015365 40015365 G A CACNA1I Missense_Mutation p.R178H 0.27 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 22 40660897 40660897 C A TNRC6B Silent p.A221A 0.16 TCGA-AD-5900-01 22 40807274 40807274 A G MKL1 3'UTR 0.23 TCGA-AD-5900-01 22 41753263 41753263 C T ZC3H7B Missense_Mutation p.R922W 0.26 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 22 41980034 41980034 T C PMM1 Missense_Mutation p.M135V 0.24 deleterious(0.02) possibly_damaging(0.627) TCGA-AD-5900-01 22 42206210 42206210 G T CCDC134 Splice_Site p.X76_splice 0.24 TCGA-AD-5900-01 22 42263062 42263063 - C SREBF2 Frame_Shift_Ins p.Q108Tfs*70 0.26 TCGA-AD-5900-01 22 42393075 42393075 C A SEPT3 3'UTR 0.36 TCGA-AD-5900-01 22 42970767 42970767 C T SERHL2 3'Flank 0.26 TCGA-AD-5900-01 22 43036187 43036187 A G ATP5L2 Missense_Mutation p.Y32H 0.21 tolerated(0.37) benign(0.006) TCGA-AD-5900-01 22 43576939 43576939 G A TTLL12 Missense_Mutation p.L119F 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-AD-5900-01 22 45316294 45316294 G A PHF21B Missense_Mutation p.A66V 0.12 tolerated_low_confidence(0.12) benign(0.039) TCGA-AD-5900-01 22 46096203 46096203 C T ATXN10 Missense_Mutation p.R145W 0.28 deleterious(0) probably_damaging(0.937) TCGA-AD-5900-01 22 46751342 46751342 C - TRMU Frame_Shift_Del p.R294Gfs*12 0.16 TCGA-AD-5900-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.69 TCGA-AD-5900-01 22 50315279 50315279 C T CRELD2 Silent p.C154C 0.15 TCGA-AD-5900-01 22 50439537 50439537 C T IL17REL Missense_Mutation p.R28H 0.23 deleterious(0.03) benign(0.14) TCGA-AD-5900-01 22 50633419 50633419 C T TRABD Missense_Mutation p.R124W 0.26 deleterious(0) possibly_damaging(0.846) TCGA-AD-5900-01 22 50648623 50648623 C T SELO Missense_Mutation p.T318M 0.28 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 22 50705705 50705705 G A MAPK11 Missense_Mutation p.S143L 0.14 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 22 50717350 50717352 TCT - PLXNB2 In_Frame_Del p.K1493del 0.32 TCGA-AD-5900-01 22 50727184 50727184 C T PLXNB2 Missense_Mutation p.M456I 0.27 tolerated(0.06) benign(0.004) TCGA-AD-5900-01 22 50751447 50751447 C T DENND6B Missense_Mutation p.D480N 0.41 tolerated(0.09) possibly_damaging(0.624) TCGA-AD-5900-01 22 50928027 50928027 T C MIOX Missense_Mutation p.C235R 0.29 tolerated(0.07) probably_damaging(0.998) TCGA-AD-5900-01 22 50941833 50941833 C T LMF2 Missense_Mutation p.R704Q 0.35 tolerated(0.14) benign(0.059) TCGA-AD-5900-01 22 50988610 50988610 G A KLHDC7B 3'UTR 0.25 TCGA-AD-5900-01 22 51041917 51041917 T C MAPK8IP2 Missense_Mutation p.L146P 0.11 tolerated(0.13) possibly_damaging(0.883) TCGA-AD-5900-01 22 51160682 51160682 G - SHANK3 Frame_Shift_Del p.D1492Tfs*18 0.16 TCGA-AD-5900-01 2 100199430 100199430 T - AFF3 Frame_Shift_Del p.M900Cfs*22 0.19 TCGA-AD-5900-01 2 103059702 103059702 A - IL18RAP Frame_Shift_Del p.R281Gfs*7 0.25 TCGA-AD-5900-01 2 109088365 109088367 TCT - GCC2 In_Frame_Del p.L862del 0.27 TCGA-AD-5900-01 2 109300585 109300585 T - LIMS1 3'UTR 0.15 TCGA-AD-5900-01 2 10933246 10933246 G A PDIA6 Silent p.S143S 0.26 TCGA-AD-5900-01 2 109371464 109371464 G A RANBP2 Missense_Mutation p.R769Q 0.24 tolerated(0.28) benign(0.035) TCGA-AD-5900-01 2 109964230 109964230 G A SH3RF3 Missense_Mutation p.R225H 0.32 deleterious(0.05) benign(0.127) TCGA-AD-5900-01 2 11052957 11052957 C T KCNF1 Silent p.R135R 0.36 TCGA-AD-5900-01 2 110922263 110922263 G A NPHP1 Missense_Mutation p.A258V 0.06 tolerated(0.65) benign(0) TCGA-AD-5900-01 2 113067707 113067707 A G ZC3H6 Silent p.G194G 0.31 TCGA-AD-5900-01 2 113090071 113090071 G A ZC3H6 3'UTR 0.33 TCGA-AD-5900-01 2 11593886 11593886 G A E2F6 Silent p.L68L 0.25 TCGA-AD-5900-01 2 11721016 11721016 G A GREB1 Intron 0.31 TCGA-AD-5900-01 2 11732975 11732975 C T GREB1 Silent p.T473T 0.31 TCGA-AD-5900-01 2 122006619 122006619 C T TFCP2L1 Silent p.T112T 0.39 TCGA-AD-5900-01 2 125367458 125367458 G A CNTNAP5 Missense_Mutation p.G612S 0.15 deleterious(0) probably_damaging(0.913) TCGA-AD-5900-01 2 125672734 125672734 C T CNTNAP5 3'UTR 0.16 TCGA-AD-5900-01 2 128699440 128699440 T C SAP130 3'UTR 0.24 TCGA-AD-5900-01 2 131331980 131331980 G T AC140481.2 Missense_Mutation p.G19W 0.15 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 2 131522428 131522428 C T AMER3 3'UTR 0.29 TCGA-AD-5900-01 2 132249560 132249560 G - MZT2A Frame_Shift_Del p.L70Sfs*16 0.38 TCGA-AD-5900-01 2 133541822 133541822 C T NCKAP5 Silent p.G854G 0.04 TCGA-AD-5900-01 2 135214280 135214280 G T TMEM163 3'UTR 0.17 TCGA-AD-5900-01 2 135655983 135655983 A G ACMSD Missense_Mutation p.M308V 0.21 tolerated(0.19) benign(0.011) TCGA-AD-5900-01 2 135740771 135740771 C A MAP3K19 Intron 0.30 TCGA-AD-5900-01 2 137917865 137917865 C T THSD7B Silent p.D484D 0.07 TCGA-AD-5900-01 2 139307748 139307748 G T SPOPL 5'UTR 0.33 TCGA-AD-5900-01 2 141762918 141762918 C A LRP1B Missense_Mutation p.G830V 0.16 probably_damaging(0.953) TCGA-AD-5900-01 2 144525565 144525565 G A ARHGAP15 Missense_Mutation p.A418T 0.16 tolerated(0.41) benign(0.007) TCGA-AD-5900-01 2 145146450 145146450 C A ZEB2 3'UTR 0.28 TCGA-AD-5900-01 2 148602583 148602583 T G ACVR2A 5'UTR 0.25 TCGA-AD-5900-01 2 149501278 149501278 T A EPC2 Missense_Mutation p.I134N 0.26 deleterious(0) possibly_damaging(0.876) TCGA-AD-5900-01 2 152319441 152319441 C T RIF1 Missense_Mutation p.T1136M 0.25 tolerated(0.31) benign(0.012) TCGA-AD-5900-01 2 152492789 152492789 G A NEB Silent p.D3018D 0.23 TCGA-AD-5900-01 2 152518796 152518796 G T NEB Silent p.G1941G 0.28 TCGA-AD-5900-01 2 158177925 158177925 G T ERMN Missense_Mutation p.P251H 0.05 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 2 166245289 166245289 C A SCN2A Missense_Mutation p.P1658H 0.25 deleterious(0) probably_damaging(0.986) TCGA-AD-5900-01 2 166535430 166535430 G A CSRNP3 Missense_Mutation p.V309I 0.26 tolerated(0.18) benign(0.159) TCGA-AD-5900-01 2 166797590 166797590 C T TTC21B Missense_Mutation p.M219I 0.09 deleterious(0.01) probably_damaging(0.949) TCGA-AD-5900-01 2 166930050 166930050 G A SCN1A Missense_Mutation p.R28C 0.29 deleterious(0.04) possibly_damaging(0.855) TCGA-AD-5900-01 2 167108302 167108302 C T SCN9A Missense_Mutation p.D1138N 0.05 tolerated(0.49) benign(0.194) TCGA-AD-5900-01 2 168096424 168096424 T C XIRP2 Silent p.N306N 0.26 TCGA-AD-5900-01 2 170031747 170031747 T C LRP2 Missense_Mutation p.H3575R 0.27 benign(0.013) TCGA-AD-5900-01 2 170531383 170531384 - T CCDC173 Frame_Shift_Ins p.N154Kfs*9 0.23 TCGA-AD-5900-01 2 170850848 170850848 G A UBR3 Missense_Mutation p.R1267H 0.24 tolerated(0.1) possibly_damaging(0.852) TCGA-AD-5900-01 2 171675146 171675146 G A GAD1 Silent p.A15A 0.23 TCGA-AD-5900-01 2 171822527 171822527 C - GORASP2 Frame_Shift_Del p.T418Lfs*74 0.32 TCGA-AD-5900-01 2 173356215 173356215 T C ITGA6 Silent p.A984A 0.31 TCGA-AD-5900-01 2 174229583 174229583 C T CDCA7 Missense_Mutation p.R254W 0.19 deleterious(0.05) benign(0.139) TCGA-AD-5900-01 2 174232001 174232001 G A CDCA7 Missense_Mutation p.A437T 0.26 deleterious(0.04) benign(0.186) TCGA-AD-5900-01 2 175006709 175006711 ATC - OLA1 In_Frame_Del p.D131del 0.28 TCGA-AD-5900-01 2 176945431 176945431 G T EVX2 Missense_Mutation p.H279N 0.24 tolerated(0.18) possibly_damaging(0.474) TCGA-AD-5900-01 2 176959481 176959481 C T HOXD13 3'UTR 0.08 TCGA-AD-5900-01 2 176983888 176983888 C T HOXD10 Nonsense_Mutation p.R318* 0.21 TCGA-AD-5900-01 2 179398434 179398434 T A TTN Missense_Mutation p.N34303I 0.11 TCGA-AD-5900-01 2 179413291 179413291 C T TTN Missense_Mutation p.G31021D 0.23 TCGA-AD-5900-01 2 179465644 179465644 T C TTN Missense_Mutation p.N18663D 0.27 TCGA-AD-5900-01 2 179512143 179512143 G T TTN Missense_Mutation p.P13369H 0.25 TCGA-AD-5900-01 2 179542421 179542421 A G TTN Silent p.P11406P 0.27 TCGA-AD-5900-01 2 179574312 179574312 C A TTN Silent p.T9578T 0.27 TCGA-AD-5900-01 2 179718220 179718220 C T CCDC141 Silent p.P1064P 0.06 TCGA-AD-5900-01 2 18113027 18113027 G A KCNS3 Nonsense_Mutation p.W251* 0.21 TCGA-AD-5900-01 2 183641975 183641975 A T DNAJC10 3'UTR 0.28 TCGA-AD-5900-01 2 185801262 185801262 T A ZNF804A Missense_Mutation p.V380D 0.28 tolerated(0.66) benign(0.282) TCGA-AD-5900-01 2 189907968 189907968 C T COL5A2 Missense_Mutation p.R1127H 0.08 unknown(0) TCGA-AD-5900-01 2 189940143 189940143 A G COL5A2 Silent p.G360G 0.27 TCGA-AD-5900-01 2 191302246 191302246 T - MFSD6 Frame_Shift_Del p.F499Lfs*8 0.25 TCGA-AD-5900-01 2 191373999 191373999 A G TMEM194B Silent p.P390P 0.27 TCGA-AD-5900-01 2 191523906 191523906 G A NAB1 Missense_Mutation p.A2T 0.27 tolerated(0.07) probably_damaging(0.995) TCGA-AD-5900-01 2 191905837 191905837 G A STAT4 Missense_Mutation p.T430M 0.30 deleterious(0.04) probably_damaging(0.945) TCGA-AD-5900-01 2 196786882 196786882 G A DNAH7 Nonsense_Mutation p.R1289* 0.26 TCGA-AD-5900-01 2 197085637 197085637 C - HECW2 Frame_Shift_Del p.G1392Vfs*19 0.19 TCGA-AD-5900-01 2 202002933 202002933 C T CFLAR Intron 0.34 TCGA-AD-5900-01 2 202672357 202672357 T - CDK15 Frame_Shift_Del p.Q90Sfs*15 0.27 TCGA-AD-5900-01 2 203149168 203149168 G A NOP58 Missense_Mutation p.R133H 0.22 tolerated(0.08) possibly_damaging(0.512) TCGA-AD-5900-01 2 203421005 203421005 C T BMPR2 Nonsense_Mutation p.R873* 0.30 TCGA-AD-5900-01 2 205550903 205550903 G T PARD3B Splice_Site p.X41_splice 0.22 TCGA-AD-5900-01 2 20649010 20649010 C T RHOB 3'UTR 0.07 TCGA-AD-5900-01 2 208795845 208795845 T C PLEKHM3 Splice_Site p.X565_splice 0.29 TCGA-AD-5900-01 2 209116173 209116173 C T IDH1 Missense_Mutation p.V35M 0.29 deleterious_low_confidence(0.01) benign(0.303) TCGA-AD-5900-01 2 210557847 210557847 A C MAP2 Missense_Mutation p.Q318P 0.27 tolerated_low_confidence(0.06) possibly_damaging(0.52) TCGA-AD-5900-01 2 213871973 213871974 - A IKZF2 3'UTR 0.25 TCGA-AD-5900-01 2 216229657 216229657 C A FN1 Missense_Mutation p.W2399L 0.25 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 2 216960846 216960846 A G TMEM169 Missense_Mutation p.I54V 0.06 tolerated(0.82) benign(0.005) TCGA-AD-5900-01 2 218712955 218712955 C - TNS1 Frame_Shift_Del p.G637Efs*11 0.23 TCGA-AD-5900-01 2 219001201 219001201 G - CXCR2 3'UTR 0.17 TCGA-AD-5900-01 2 219141780 219141780 T C TMBIM1 Missense_Mutation p.I228V 0.26 tolerated(0.38) benign(0.241) TCGA-AD-5900-01 2 219498507 219498507 G - PLCD4 Intron 0.19 TCGA-AD-5900-01 2 219561813 219561813 G A STK36 Missense_Mutation p.V880I 0.25 tolerated(0.77) benign(0.001) TCGA-AD-5900-01 2 220439783 220439783 G A INHA Silent p.T212T 0.25 TCGA-AD-5900-01 2 223161908 223161908 C T PAX3 Missense_Mutation p.R37H 0.24 deleterious(0.01) possibly_damaging(0.714) TCGA-AD-5900-01 2 233323594 233323594 C T ALPI Missense_Mutation p.A442V 0.24 deleterious(0) possibly_damaging(0.708) TCGA-AD-5900-01 2 233735096 233735096 C T C2orf82 Silent p.S15S 0.26 TCGA-AD-5900-01 2 235962556 235962556 G T SH3BP4 3'UTR 0.45 TCGA-AD-5900-01 2 238280796 238280796 G T COL6A3 Silent p.A1288A 0.21 TCGA-AD-5900-01 2 238881802 238881802 G A UBE2F Missense_Mutation p.R18Q 0.29 tolerated(0.4) benign(0.004) TCGA-AD-5900-01 2 239140709 239140709 C - AC016757.3 5'Flank 0.31 TCGA-AD-5900-01 2 241066258 241066258 T C MYEOV2 Missense_Mutation p.R161G 0.24 deleterious_low_confidence(0) unknown(0) TCGA-AD-5900-01 2 241398472 241398472 G T GPC1 Missense_Mutation p.Q64H 0.10 deleterious(0.02) probably_damaging(1) TCGA-AD-5900-01 2 241404115 241404115 G A GPC1 Silent p.A322A 0.34 TCGA-AD-5900-01 2 241465828 241465828 C T ANKMY1 Missense_Mutation p.A241T 0.23 tolerated(0.11) benign(0.2) TCGA-AD-5900-01 2 241516390 241516390 C T RNPEPL1 Missense_Mutation p.R392C 0.17 deleterious(0.04) possibly_damaging(0.761) TCGA-AD-5900-01 2 241816973 241816973 G A AGXT Missense_Mutation p.R289H 0.32 tolerated(0.11) benign(0.003) TCGA-AD-5900-01 2 241988167 241988167 G A SNED1 Silent p.G496G 0.35 TCGA-AD-5900-01 2 242168910 242168910 C T HDLBP 3'UTR 0.25 TCGA-AD-5900-01 2 24428099 24428099 T - ITSN2 Frame_Shift_Del p.A1583Pfs*86 0.23 TCGA-AD-5900-01 2 26698814 26698814 C T OTOF Missense_Mutation p.V987I 0.33 tolerated(0.06) benign(0.272) TCGA-AD-5900-01 2 27001158 27001158 C T SLC35F6 Missense_Mutation p.R299C 0.27 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 2 27121389 27121389 G A DPYSL5 Missense_Mutation p.V8M 0.24 tolerated(0.22) benign(0.001) TCGA-AD-5900-01 2 27290367 27290367 C T AGBL5 Nonsense_Mutation p.R699* 0.23 TCGA-AD-5900-01 2 27303102 27303102 G - EMILIN1 Frame_Shift_Del p.C85Lfs*29 0.25 TCGA-AD-5900-01 2 27466335 27466335 C T CAD Silent p.N2209N 0.27 TCGA-AD-5900-01 2 29136955 29136955 G A WDR43 Silent p.T209T 0.26 TCGA-AD-5900-01 2 29225416 29225416 G - FAM179A Frame_Shift_Del p.G149Efs*21 0.27 TCGA-AD-5900-01 2 31133847 31133847 T C GALNT14 Missense_Mutation p.T532A 0.26 tolerated(0.72) benign(0.013) TCGA-AD-5900-01 2 32249034 32249034 A - DPY30 3'UTR 0.28 TCGA-AD-5900-01 2 32379499 32379499 C T SPAST Silent p.S595S 0.25 TCGA-AD-5900-01 2 32724803 32724803 C T BIRC6 Silent p.S2886S 0.27 TCGA-AD-5900-01 2 32743918 32743918 T A BIRC6 Missense_Mutation p.V3843D 0.07 benign(0.333) TCGA-AD-5900-01 2 36808670 36808670 G A FEZ2 Intron 0.28 TCGA-AD-5900-01 2 3727551 3727551 C T ALLC Nonsense_Mutation p.R89* 0.26 TCGA-AD-5900-01 2 38301821 38301821 C T CYP1B1 Silent p.A237A 0.22 TCGA-AD-5900-01 2 39212978 39212978 G A SOS1 Missense_Mutation p.A1330V 0.07 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-AD-5900-01 2 40342411 40342411 G T SLC8A1 Nonsense_Mutation p.C968* 0.31 TCGA-AD-5900-01 2 43451357 43451357 C - ZFP36L2 3'UTR 0.45 TCGA-AD-5900-01 2 45474 45474 C A FAM110C Missense_Mutation p.K304N 0.08 deleterious(0.03) probably_damaging(0.932) TCGA-AD-5900-01 2 53995002 53995002 G T CHAC2 5'UTR 0.09 TCGA-AD-5900-01 2 55254374 55254377 TCTA - RTN4 Frame_Shift_Del p.D286Efs*3 0.31 TCGA-AD-5900-01 2 5837312 5837312 C T SOX11 3'UTR 0.30 TCGA-AD-5900-01 2 58390068 58390068 C T FANCL Missense_Mutation p.S284N 0.22 deleterious(0.02) benign(0.255) TCGA-AD-5900-01 2 5839882 5839883 - T SOX11 3'UTR 0.18 TCGA-AD-5900-01 2 5840223 5840223 G C SOX11 3'UTR 0.21 TCGA-AD-5900-01 2 61570980 61570980 C T USP34 Missense_Mutation p.A824T 0.25 deleterious(0.02) benign(0.093) TCGA-AD-5900-01 2 62067182 62067183 - A FAM161A Frame_Shift_Ins p.L319Ffs*8 0.21 TCGA-AD-5900-01 2 67626345 67626345 T C ETAA1 Missense_Mutation p.S90P 0.05 tolerated(0.21) benign(0.05) TCGA-AD-5900-01 2 67630374 67630376 AAG - ETAA1 In_Frame_Del p.E190del 0.26 TCGA-AD-5900-01 2 68622887 68622887 C - PLEK Frame_Shift_Del p.K333Rfs*29 0.22 TCGA-AD-5900-01 2 69093656 69093656 G - BMP10 Frame_Shift_Del p.L128Sfs*29 0.09 TCGA-AD-5900-01 2 69709789 69709789 T C AAK1 Intron 0.29 TCGA-AD-5900-01 2 71036934 71036934 C A CLEC4F Missense_Mutation p.R532M 0.23 tolerated(0.14) benign(0.02) TCGA-AD-5900-01 2 71206991 71206991 G A ANKRD53 Splice_Site p.X206_splice 0.26 TCGA-AD-5900-01 2 73653602 73653602 A T ALMS1 Missense_Mutation p.E420V 0.22 probably_damaging(0.93) TCGA-AD-5900-01 2 73676839 73676839 A G ALMS1 Missense_Mutation p.Q1061R 0.24 possibly_damaging(0.876) TCGA-AD-5900-01 2 74718725 74718725 G A TTC31 Missense_Mutation p.A268T 0.27 tolerated(0.05) benign(0.016) TCGA-AD-5900-01 2 74761757 74761757 C T LOXL3 Missense_Mutation p.R575Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-AD-5900-01 2 80530568 80530568 G A LRRTM1 Missense_Mutation p.T126I 0.25 tolerated(0.1) benign(0.214) TCGA-AD-5900-01 2 84517881 84517881 C T FUNDC2P2 RNA 0.29 TCGA-AD-5900-01 2 84844108 84844108 T C DNAH6 Splice_Site p.X1191_splice 0.26 TCGA-AD-5900-01 2 86271375 86271375 G A POLR1A Missense_Mutation p.R1008C 0.33 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 2 88056409 88056409 C T PLGLB2 3'UTR 0.04 TCGA-AD-5900-01 2 89385184 89385184 C A IGKV3-15 Translation_Start_Site p.M1? 0.15 deleterious(0) probably_damaging(0.994) TCGA-AD-5900-01 2 96932117 96932117 G A CIAO1 Missense_Mutation p.R10H 0.13 deleterious(0.03) possibly_damaging(0.797) TCGA-AD-5900-01 2 96953639 96953639 G A SNRNP200 Silent p.D1109D 0.27 TCGA-AD-5900-01 2 97217541 97217541 G A ARID5A Missense_Mutation p.A426T 0.29 tolerated(0.42) benign(0.024) TCGA-AD-5900-01 2 98341659 98341659 G A ZAP70 Silent p.T169T 0.23 TCGA-AD-5900-01 2 98429163 98429163 A G TMEM131 Missense_Mutation p.V556A 0.07 deleterious(0.02) benign(0.239) TCGA-AD-5900-01 2 99779519 99779520 - A LIPT1 Frame_Shift_Ins p.I369Nfs*2 0.20 TCGA-AD-5900-01 2 99978108 99978108 G A EIF5B Silent p.A248A 0.29 TCGA-AD-5900-01 3 100058051 100058051 T G NIT2 Splice_Site p.X42_splice 0.24 TCGA-AD-5900-01 3 100473473 100473473 G A ABI3BP Missense_Mutation p.A927V 0.09 deleterious(0) benign(0.015) TCGA-AD-5900-01 3 101284160 101284160 T - TRMT10C Frame_Shift_Del p.L180Yfs*10 0.28 TCGA-AD-5900-01 3 10420025 10420025 T G ATP2B2 Missense_Mutation p.D371A 0.30 tolerated(0.06) possibly_damaging(0.676) TCGA-AD-5900-01 3 10452384 10452384 G A ATP2B2 Silent p.D105D 0.39 TCGA-AD-5900-01 3 108147390 108147390 C A MYH15 Missense_Mutation p.Q1237H 0.06 deleterious(0.03) benign(0.119) TCGA-AD-5900-01 3 10916662 10916662 C T SLC6A11 Missense_Mutation p.A258V 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AD-5900-01 3 10976830 10976830 G A SLC6A11 Missense_Mutation p.C564Y 0.30 tolerated(0.06) possibly_damaging(0.863) TCGA-AD-5900-01 3 11068028 11068028 C A SLC6A1 Missense_Mutation p.A354D 0.25 tolerated(0.12) benign(0.045) TCGA-AD-5900-01 3 112993315 112993315 G - BOC Frame_Shift_Del p.Q445Nfs*66 0.27 TCGA-AD-5900-01 3 11300949 11300949 G A HRH1 Missense_Mutation p.V76M 0.31 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 3 113673092 113673092 G A ZDHHC23 Missense_Mutation p.R236H 0.29 tolerated(0.1) benign(0.059) TCGA-AD-5900-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.18 TCGA-AD-5900-01 3 118945817 118945817 A G B4GALT4 Missense_Mutation p.S109P 0.06 tolerated(0.3) benign(0.317) TCGA-AD-5900-01 3 120130748 120130748 C T FSTL1 Missense_Mutation p.C84Y 0.31 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 3 120876401 120876401 C T STXBP5L Silent p.S268S 0.07 TCGA-AD-5900-01 3 122247571 122247571 G A PARP9 Silent p.G735G 0.27 TCGA-AD-5900-01 3 122647441 122647441 G A SEMA5B Nonsense_Mutation p.R241* 0.39 TCGA-AD-5900-01 3 125877315 125877315 G - ALDH1L1 Frame_Shift_Del p.R109Gfs*62 0.35 TCGA-AD-5900-01 3 126153166 126153166 G A CCDC37 Missense_Mutation p.V524M 0.32 tolerated(0.06) possibly_damaging(0.811) TCGA-AD-5900-01 3 126707730 126707730 G A PLXNA1 Silent p.P98P 0.28 TCGA-AD-5900-01 3 126710314 126710314 G A PLXNA1 Missense_Mutation p.V428M 0.33 tolerated(0.21) benign(0.318) TCGA-AD-5900-01 3 127338034 127338034 C T MCM2 Silent p.Y726Y 0.29 TCGA-AD-5900-01 3 127396115 127396115 C - ABTB1 Frame_Shift_Del p.E252Sfs*102 0.28 TCGA-AD-5900-01 3 128292593 128292593 C T C3orf27 5'UTR 0.09 TCGA-AD-5900-01 3 12858760 12858760 C A CAND2 Missense_Mutation p.L777I 0.10 tolerated(0.06) probably_damaging(0.997) TCGA-AD-5900-01 3 12955015 12955015 G A IQSEC1 Silent p.C757C 0.26 TCGA-AD-5900-01 3 131206525 131206525 T - MRPL3 Frame_Shift_Del p.T210Lfs*10 0.25 TCGA-AD-5900-01 3 132153456 132153456 G - DNAJC13 Frame_Shift_Del p.K23Sfs*21 0.22 TCGA-AD-5900-01 3 13407457 13407457 G T NUP210 Missense_Mutation p.L641M 0.28 tolerated(0.09) benign(0.091) TCGA-AD-5900-01 3 13441258 13441258 G A NUP210 Missense_Mutation p.R91C 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-AD-5900-01 3 13659604 13659604 G T FBLN2 Missense_Mutation p.E586D 0.32 deleterious(0.01) possibly_damaging(0.863) TCGA-AD-5900-01 3 137822362 137822362 C A DZIP1L Missense_Mutation p.S151I 0.09 tolerated(0.09) benign(0.031) TCGA-AD-5900-01 3 137843707 137843707 G A A4GNT Missense_Mutation p.A141V 0.22 tolerated(0.47) benign(0.003) TCGA-AD-5900-01 3 13916563 13916563 A G WNT7A Missense_Mutation p.I60T 0.20 deleterious(0.03) benign(0.221) TCGA-AD-5900-01 3 13921328 13921328 G A WNT7A 5'UTR 0.36 TCGA-AD-5900-01 3 140281670 140281670 C T CLSTN2 Missense_Mutation p.R744C 0.23 tolerated(0.07) benign(0.145) TCGA-AD-5900-01 3 141235173 141235174 - T RASA2 Frame_Shift_Ins p.S88Qfs*2 0.22 TCGA-AD-5900-01 3 14189441 14189441 A G XPC Silent p.N827N 0.21 TCGA-AD-5900-01 3 147128468 147128468 C A ZIC1 Missense_Mutation p.A190D 0.30 deleterious(0.01) possibly_damaging(0.599) TCGA-AD-5900-01 3 148460007 148460007 T C AGTR1 3'UTR 0.29 TCGA-AD-5900-01 3 148460672 148460672 A - AGTR1 3'UTR 0.17 TCGA-AD-5900-01 3 149216604 149216604 T C TM4SF4 Missense_Mutation p.V166A 0.29 tolerated(0.32) benign(0.178) TCGA-AD-5900-01 3 14963502 14963502 C T FGD5 Missense_Mutation p.A1216V 0.33 tolerated(0.08) probably_damaging(0.98) TCGA-AD-5900-01 3 14964003 14964003 G A FGD5 Missense_Mutation p.G1252D 0.26 deleterious(0.01) possibly_damaging(0.737) TCGA-AD-5900-01 3 150690295 150690295 G A CLRN1 Silent p.H67H 0.30 TCGA-AD-5900-01 3 151102897 151102897 T C MED12L Missense_Mutation p.V1634A 0.29 deleterious(0) benign(0.119) TCGA-AD-5900-01 3 151458545 151458547 ACA - AADACL2 In_Frame_Del p.T85del 0.30 TCGA-AD-5900-01 3 152554519 152554519 C T P2RY1 Silent p.N316N 0.31 TCGA-AD-5900-01 3 152881457 152881457 T C RAP2B 3'UTR 0.18 TCGA-AD-5900-01 3 15300442 15300442 C T SH3BP5 Missense_Mutation p.R262H 0.30 deleterious(0.03) benign(0.135) TCGA-AD-5900-01 3 154138920 154138920 G A GPR149 Missense_Mutation p.P511S 0.06 tolerated(0.15) benign(0.063) TCGA-AD-5900-01 3 155212303 155212303 G T PLCH1 Missense_Mutation p.T621N 0.05 deleterious(0.03) possibly_damaging(0.809) TCGA-AD-5900-01 3 155311814 155311814 C T PLCH1 Missense_Mutation p.R117H 0.27 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 3 15751232 15751232 C T ANKRD28 Missense_Mutation p.C420Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 3 160130365 160130365 T G SMC4 Intron 0.11 TCGA-AD-5900-01 3 16450919 16450919 G T RFTN1 Missense_Mutation p.P135Q 0.22 deleterious(0.01) benign(0.021) TCGA-AD-5900-01 3 168838875 168838876 - TTGTG MECOM Frame_Shift_Ins p.K244Nfs*9 0.18 TCGA-AD-5900-01 3 170141078 170141078 G A CLDN11 Silent p.R118R 0.08 TCGA-AD-5900-01 3 170244695 170244695 G A SLC7A14 Missense_Mutation p.R11W 0.40 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-AD-5900-01 3 178916725 178916725 C T PIK3CA Missense_Mutation p.R38C 0.24 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 3 178960977 178960977 G - KCNMB3 Frame_Shift_Del p.S187Hfs*16 0.13 TCGA-AD-5900-01 3 180326659 180326659 C T TTC14 Intron 0.30 TCGA-AD-5900-01 3 180328139 180328139 A G TTC14 Missense_Mutation p.N708D 0.06 tolerated_low_confidence(0.55) unknown(0) TCGA-AD-5900-01 3 180332568 180332568 T - CCDC39 3'UTR 0.28 TCGA-AD-5900-01 3 180334332 180334332 C T CCDC39 Missense_Mutation p.R853H 0.26 tolerated(0.64) benign(0.013) TCGA-AD-5900-01 3 183667647 183667647 G A ABCC5 Missense_Mutation p.R1041C 0.25 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 3 183901470 183901470 C - AP2M1 3'UTR 0.31 TCGA-AD-5900-01 3 183995072 183995072 G T ECE2 Missense_Mutation p.C217F 0.26 deleterious(0) probably_damaging(0.994) TCGA-AD-5900-01 3 184020170 184020170 C T PSMD2 Silent p.Y239Y 0.26 TCGA-AD-5900-01 3 184020174 184020174 C T PSMD2 Missense_Mutation p.P241S 0.26 tolerated(0.07) possibly_damaging(0.792) TCGA-AD-5900-01 3 185985531 185985531 G A DGKG Silent p.D384D 0.28 TCGA-AD-5900-01 3 186293717 186293717 T - DNAJB11 Frame_Shift_Del p.S107Hfs*30 0.23 TCGA-AD-5900-01 3 193036847 193036847 G A ATP13A5 Missense_Mutation p.R656C 0.26 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 3 193051541 193051541 C T ATP13A5 Missense_Mutation p.G424R 0.24 tolerated(0.19) benign(0.031) TCGA-AD-5900-01 3 195251671 195251671 G A PPP1R2 Missense_Mutation p.A85V 0.06 tolerated(0.1) benign(0.026) TCGA-AD-5900-01 3 195515301 195515301 G A MUC4 Silent p.S1050S 0.08 TCGA-AD-5900-01 3 195538816 195538816 C T MUC4 5'UTR 0.32 TCGA-AD-5900-01 3 196288199 196288199 C A WDR53 Missense_Mutation p.G50W 0.30 deleterious(0) possibly_damaging(0.844) TCGA-AD-5900-01 3 196386909 196386909 C T NRROS Missense_Mutation p.P132L 0.17 tolerated(0.12) benign(0.003) TCGA-AD-5900-01 3 20194018 20194018 T - KAT2B 3'UTR 0.33 TCGA-AD-5900-01 3 25470284 25470284 C T RARB Missense_Mutation p.A21V 0.30 tolerated_low_confidence(0.17) benign(0.043) TCGA-AD-5900-01 3 25781138 25781138 G A NGLY1 Silent p.L271L 0.27 TCGA-AD-5900-01 3 25833042 25833043 - T OXSM Frame_Shift_Ins p.V180Cfs*3 0.26 TCGA-AD-5900-01 3 3098025 3098026 - T CNTN4 3'UTR 0.14 TCGA-AD-5900-01 3 36898484 36898484 C T TRANK1 Missense_Mutation p.R866Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 3 37323516 37323516 G A GOLGA4 Missense_Mutation p.R99Q 0.25 probably_damaging(0.974) TCGA-AD-5900-01 3 37340377 37340377 C A GOLGA4 Missense_Mutation p.R312S 0.29 probably_damaging(0.998) TCGA-AD-5900-01 3 37367279 37367279 A C GOLGA4 Missense_Mutation p.E1323A 0.32 probably_damaging(0.999) TCGA-AD-5900-01 3 3887728 3887728 C A LRRN1 Missense_Mutation p.T468N 0.44 tolerated(0.13) benign(0.07) TCGA-AD-5900-01 3 39229170 39229170 G A XIRP1 Silent p.G589G 0.27 TCGA-AD-5900-01 3 41759287 41759287 A G ULK4 Silent p.N796N 0.24 TCGA-AD-5900-01 3 43122847 43122847 C T POMGNT2 Missense_Mutation p.R26H 0.33 tolerated_low_confidence(0.33) benign(0.425) TCGA-AD-5900-01 3 43344719 43344719 T C SNRK Silent p.Y8Y 0.25 TCGA-AD-5900-01 3 44284457 44284457 C T TOPAZ1 Silent p.C153C 0.07 TCGA-AD-5900-01 3 44952783 44952783 G C TGM4 Missense_Mutation p.G600R 0.25 deleterious(0.05) possibly_damaging(0.528) TCGA-AD-5900-01 3 46307844 46307844 C T CCR3 3'UTR 0.14 TCGA-AD-5900-01 3 46399635 46399635 G T CCR2 Missense_Mutation p.R206M 0.05 tolerated(1) benign(0.048) TCGA-AD-5900-01 3 47155365 47155365 C T SETD2 Splice_Site p.X1572_splice 0.32 TCGA-AD-5900-01 3 47277929 47277929 G A KIF9 Intron 0.33 TCGA-AD-5900-01 3 47282501 47282501 C T KIF9 Missense_Mutation p.D572N 0.31 deleterious(0.05) benign(0.001) TCGA-AD-5900-01 3 47454433 47454433 C T PTPN23 Nonsense_Mutation p.Q1557* 0.29 TCGA-AD-5900-01 3 47467615 47467615 C T SCAP Missense_Mutation p.S261N 0.10 tolerated(0.11) benign(0.186) TCGA-AD-5900-01 3 47629570 47629570 C T SMARCC1 3'UTR 0.40 TCGA-AD-5900-01 3 48502043 48502043 T C ATRIP Silent p.A530A 0.25 TCGA-AD-5900-01 3 49394965 49394965 A T GPX1 Nonsense_Mutation p.C156* 0.33 TCGA-AD-5900-01 3 49568304 49568304 C - DAG1 Frame_Shift_Del p.D123Tfs*11 0.27 TCGA-AD-5900-01 3 49569279 49569279 G A DAG1 Silent p.T445T 0.29 TCGA-AD-5900-01 3 49700334 49700334 G A BSN Silent p.T3581T 0.27 TCGA-AD-5900-01 3 49760541 49760541 G T GMPPB Missense_Mutation p.P89H 0.34 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 3 49940837 49940837 G A MST1R Missense_Mutation p.A69V 0.31 deleterious(0.04) possibly_damaging(0.893) TCGA-AD-5900-01 3 50211778 50211778 G A SEMA3F Missense_Mutation p.A151T 0.37 tolerated(0.27) benign(0.166) TCGA-AD-5900-01 3 50333953 50333953 G T NAT6 3'UTR 0.32 TCGA-AD-5900-01 3 50645162 50645162 C T CISH Missense_Mutation p.S235N 0.30 tolerated(0.48) benign(0.002) TCGA-AD-5900-01 3 51431353 51431353 G - RBM15B Frame_Shift_Del p.S844Pfs*27 0.33 TCGA-AD-5900-01 3 51864627 51864627 C T IQCF3 Missense_Mutation p.A92V 0.20 deleterious(0) benign(0.266) TCGA-AD-5900-01 3 52233349 52233349 A - ALAS1 Frame_Shift_Del p.N32Tfs*5 0.13 TCGA-AD-5900-01 3 52281709 52281709 C T PPM1M 5'UTR 0.34 TCGA-AD-5900-01 3 52326768 52326768 G A GLYCTK Missense_Mutation p.G400S 0.34 tolerated(0.18) benign(0.001) TCGA-AD-5900-01 3 52403925 52403925 C T DNAH1 Missense_Mutation p.P2010S 0.33 probably_damaging(0.991) TCGA-AD-5900-01 3 52729539 52729539 C T GLT8D1 Missense_Mutation p.S237N 0.23 tolerated(0.44) benign(0.021) TCGA-AD-5900-01 3 53212542 53212542 C T PRKCD Missense_Mutation p.A35V 0.32 tolerated(0.37) possibly_damaging(0.471) TCGA-AD-5900-01 3 53531355 53531355 C A CACNA1D Missense_Mutation p.Q82K 0.28 deleterious(0.03) probably_damaging(0.979) TCGA-AD-5900-01 3 53774358 53774358 C A CACNA1D Missense_Mutation p.L955M 0.21 tolerated(0.08) benign(0.085) TCGA-AD-5900-01 3 53891654 53891654 G T IL17RB Missense_Mutation p.K228N 0.29 tolerated(0.72) benign(0) TCGA-AD-5900-01 3 56468977 56468977 C T ERC2 Missense_Mutation p.R20H 0.28 tolerated(0.05) probably_damaging(0.984) TCGA-AD-5900-01 3 56703783 56703783 G A FAM208A Missense_Mutation p.A227V 0.23 tolerated(0.8) benign(0.35) TCGA-AD-5900-01 3 62254808 62254808 T C PTPRG Silent p.V991V 0.30 TCGA-AD-5900-01 3 73433890 73433890 G A PDZRN3 Silent p.S609S 0.38 TCGA-AD-5900-01 3 78766436 78766436 C A ROBO1 Silent p.L302L 0.24 TCGA-AD-5900-01 3 81643104 81643104 G A GBE1 Missense_Mutation p.R355C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 3 9027423 9027423 C T SRGAP3 Missense_Mutation p.R1027H 0.35 deleterious_low_confidence(0) possibly_damaging(0.684) TCGA-AD-5900-01 3 9034650 9034650 T - SRGAP3 Frame_Shift_Del p.N833Tfs*18 0.31 TCGA-AD-5900-01 3 9106160 9106160 G A SRGAP3 Missense_Mutation p.L198F 0.28 tolerated(0.5) benign(0.145) TCGA-AD-5900-01 3 9489429 9489429 G A SETD5 Silent p.R614R 0.30 TCGA-AD-5900-01 3 9803319 9803319 G A CAMK1 Silent p.Y184Y 0.22 TCGA-AD-5900-01 3 98216981 98216981 A C OR5K2 Missense_Mutation p.N153H 0.21 tolerated(0.54) benign(0.078) TCGA-AD-5900-01 3 9843440 9843440 G T ARPC4 Missense_Mutation p.E129D 0.10 tolerated(0.31) benign(0.001) TCGA-AD-5900-01 4 104059573 104059573 T - CENPE Frame_Shift_Del p.R2080Gfs*3 0.26 TCGA-AD-5900-01 4 110792090 110792090 C A LRIT3 3'UTR 0.20 TCGA-AD-5900-01 4 111781789 111781789 G A MIR297 RNA 0.25 TCGA-AD-5900-01 4 114117535 114117535 C T ANK2 Silent p.N66N 0.23 TCGA-AD-5900-01 4 1206020 1206020 C A CTBP1 3'UTR 0.23 TCGA-AD-5900-01 4 123249410 123249410 G A KIAA1109 Missense_Mutation p.G3716D 0.24 benign(0.063) TCGA-AD-5900-01 4 1245287 1245287 C T CTBP1 5'Flank 0.31 TCGA-AD-5900-01 4 126238664 126238664 G A FAT4 Silent p.S366S 0.13 TCGA-AD-5900-01 4 126337744 126337744 C T FAT4 Missense_Mutation p.R2329C 0.33 possibly_damaging(0.773) TCGA-AD-5900-01 4 129767608 129767608 G A JADE1 Missense_Mutation p.A73T 0.31 tolerated(0.07) possibly_damaging(0.656) TCGA-AD-5900-01 4 134072955 134072955 C A PCDH10 Missense_Mutation p.L554M 0.31 deleterious(0) probably_damaging(0.966) TCGA-AD-5900-01 4 13605314 13605314 C T BOD1L1 Silent p.L1070L 0.04 TCGA-AD-5900-01 4 138451932 138451932 A G PCDH18 Silent p.A437A 0.24 TCGA-AD-5900-01 4 138453350 138453350 C T PCDH18 5'UTR 0.31 TCGA-AD-5900-01 4 1389637 1389637 G A CRIPAK Silent p.T446T 0.24 TCGA-AD-5900-01 4 139106388 139106388 G T SLC7A11 Missense_Mutation p.L268I 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-AD-5900-01 4 141316977 141316980 TAGT - CLGN Frame_Shift_Del p.N381Ifs*24 0.23 TCGA-AD-5900-01 4 141483372 141483372 C T UCP1 Missense_Mutation p.E262K 0.25 deleterious(0.03) benign(0.226) TCGA-AD-5900-01 4 147860973 147860973 G T TTC29 Silent p.S25S 0.09 TCGA-AD-5900-01 4 149357843 149357843 T G NR3C2 Missense_Mutation p.N57T 0.06 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-AD-5900-01 4 151504741 151504741 G T MAB21L2 Missense_Mutation p.W187L 0.29 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 4 151504912 151504912 G T MAB21L2 Missense_Mutation p.G244V 0.31 deleterious(0) probably_damaging(0.934) TCGA-AD-5900-01 4 155412480 155412480 C T DCHS2 Missense_Mutation p.E10K 0.29 tolerated_low_confidence(0.17) benign(0.004) TCGA-AD-5900-01 4 155533739 155533739 C T FGG Missense_Mutation p.R8Q 0.27 tolerated_low_confidence(0.27) benign(0.007) TCGA-AD-5900-01 4 158142818 158142818 G - GRIA2 Splice_Site p.X31_splice 0.27 TCGA-AD-5900-01 4 158284067 158284067 C T GRIA2 Silent p.A841A 0.30 TCGA-AD-5900-01 4 159091556 159091556 A - FAM198B Intron 0.22 TCGA-AD-5900-01 4 159133813 159133813 T C TMEM144 5'UTR 0.05 TCGA-AD-5900-01 4 159592832 159592832 A G C4orf46 Missense_Mutation p.V41A 0.21 tolerated_low_confidence(0.16) benign(0.01) TCGA-AD-5900-01 4 16215452 16215452 T C TAPT1 Missense_Mutation p.K90R 0.26 tolerated(1) benign(0.174) TCGA-AD-5900-01 4 162307319 162307319 G A FSTL5 Silent p.S708S 0.21 TCGA-AD-5900-01 4 165962641 165962641 G T TRIM60 3'UTR 0.26 TCGA-AD-5900-01 4 166150034 166150034 C A KLHL2 Silent p.A80A 0.20 TCGA-AD-5900-01 4 166795095 166795095 G A TLL1 Nonsense_Mutation p.W13* 0.06 TCGA-AD-5900-01 4 166913983 166913983 A C TLL1 Missense_Mutation p.K103T 0.23 tolerated(0.37) benign(0.147) TCGA-AD-5900-01 4 174219421 174219421 T G GALNT7 Missense_Mutation p.L374R 0.30 tolerated(0.94) benign(0.002) TCGA-AD-5900-01 4 1746535 1746535 G A TACC3 Silent p.S809S 0.41 TCGA-AD-5900-01 4 176622771 176622771 A G GPM6A Missense_Mutation p.F62S 0.30 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 4 177190117 177190117 C T ASB5 Missense_Mutation p.R48H 0.25 deleterious(0) probably_damaging(0.99) TCGA-AD-5900-01 4 178352842 178352842 A G AGA 3'UTR 0.25 TCGA-AD-5900-01 4 1838221 1838221 G A LETM1 Silent p.L225L 0.26 TCGA-AD-5900-01 4 184203805 184203805 C T WWC2 Intron 0.15 TCGA-AD-5900-01 4 184432081 184432081 A - ING2 Frame_Shift_Del p.K275Rfs*32 0.20 TCGA-AD-5900-01 4 184587544 184587544 G T TRAPPC11 Missense_Mutation p.K113N 0.06 deleterious(0) benign(0.403) TCGA-AD-5900-01 4 185684329 185684329 C T ACSL1 Missense_Mutation p.E505K 0.29 tolerated(0.15) benign(0.048) TCGA-AD-5900-01 4 187158028 187158028 G A KLKB1 Missense_Mutation p.C141Y 0.27 deleterious(0) probably_damaging(0.982) TCGA-AD-5900-01 4 187557272 187557273 - A FAT1 Frame_Shift_Ins p.T1364Yfs*8 0.22 TCGA-AD-5900-01 4 20597356 20597356 C T SLIT2 Silent p.C1073C 0.27 TCGA-AD-5900-01 4 20711308 20711308 T C PACRGL Missense_Mutation p.L93S 0.24 deleterious(0) probably_damaging(0.992) TCGA-AD-5900-01 4 2242086 2242086 C T HAUS3 Silent p.S196S 0.25 TCGA-AD-5900-01 4 2632811 2632811 C T FAM193A Missense_Mutation p.A27V 0.37 deleterious(0) probably_damaging(0.987) TCGA-AD-5900-01 4 264518 264518 G T ZNF732 3'UTR 0.43 TCGA-AD-5900-01 4 2930185 2930185 A - ADD1 Frame_Shift_Del p.K749Rfs*11 0.27 TCGA-AD-5900-01 4 30724479 30724479 G A PCDH7 Missense_Mutation p.D479N 0.22 tolerated_low_confidence(0.06) benign(0.043) TCGA-AD-5900-01 4 3241642 3241642 C T HTT Silent p.A3095A 0.28 TCGA-AD-5900-01 4 3251269 3251269 G T MSANTD1 Missense_Mutation p.R107M 0.33 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 4 3478158 3478158 G A DOK7 Missense_Mutation p.A141T 0.26 tolerated(0.54) probably_damaging(1) TCGA-AD-5900-01 4 37432315 37432315 G T KIAA1239 Missense_Mutation p.W160L 0.08 tolerated(0.32) possibly_damaging(0.521) TCGA-AD-5900-01 4 38830707 38830707 A T TLR6 Missense_Mutation p.F130I 0.31 deleterious(0) possibly_damaging(0.703) TCGA-AD-5900-01 4 40104016 40104016 C T N4BP2 Missense_Mutation p.S184L 0.31 deleterious(0.03) possibly_damaging(0.548) TCGA-AD-5900-01 4 42403410 42403410 C A SHISA3 Missense_Mutation p.P220H 0.08 deleterious(0) probably_damaging(0.972) TCGA-AD-5900-01 4 44449744 44449744 G A KCTD8 Missense_Mutation p.T266M 0.20 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 4 44693686 44693686 C T GUF1 Nonsense_Mutation p.R495* 0.38 TCGA-AD-5900-01 4 46976285 46976285 G A GABRA4 Nonsense_Mutation p.Q229* 0.24 TCGA-AD-5900-01 4 47953471 47953471 A G CNGA1 Silent p.D114D 0.29 TCGA-AD-5900-01 4 5749909 5749909 A G EVC Missense_Mutation p.Q325R 0.27 tolerated(0.25) benign(0.009) TCGA-AD-5900-01 4 6083334 6083334 A G JAKMIP1 Splice_Site p.X367_splice 0.22 TCGA-AD-5900-01 4 6303447 6303447 C T WFS1 Missense_Mutation p.A642V 0.33 tolerated(0.19) probably_damaging(0.994) TCGA-AD-5900-01 4 6325037 6325037 T C PPP2R2C Missense_Mutation p.M446V 0.06 tolerated_low_confidence(0.49) benign(0) TCGA-AD-5900-01 4 68619622 68619622 C T GNRHR Silent p.T144T 0.28 TCGA-AD-5900-01 4 70066338 70066338 G A UGT2B11 Silent p.H470H 0.24 TCGA-AD-5900-01 4 7056895 7056895 T - TADA2B 3'UTR 0.26 TCGA-AD-5900-01 4 71384512 71384512 A G AMTN Silent p.L6L 0.25 TCGA-AD-5900-01 4 79296909 79296909 C T FRAS1 Silent p.C1056C 0.31 TCGA-AD-5900-01 4 83778873 83778873 A G SEC31A Silent p.S557S 0.26 TCGA-AD-5900-01 4 83859585 83859585 C A LIN54 Missense_Mutation p.A505S 0.31 tolerated(0.24) benign(0.37) TCGA-AD-5900-01 4 85715716 85715716 C T WDFY3 Missense_Mutation p.R1148Q 0.31 deleterious(0.02) benign(0.148) TCGA-AD-5900-01 4 85738618 85738618 T A WDFY3 Missense_Mutation p.D605V 0.22 deleterious(0) possibly_damaging(0.889) TCGA-AD-5900-01 4 86898758 86898758 A G ARHGAP24 Missense_Mutation p.N281S 0.26 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 4 87637703 87637703 A G PTPN13 Missense_Mutation p.T406A 0.05 tolerated(0.25) benign(0.001) TCGA-AD-5900-01 4 88047357 88047357 C T AFF1 Missense_Mutation p.R894W 0.32 deleterious(0.01) unknown(0) TCGA-AD-5900-01 4 88898083 88898083 C T SPP1 Silent p.G12G 0.04 TCGA-AD-5900-01 4 90856466 90856466 C T MMRN1 Silent p.Y545Y 0.29 TCGA-AD-5900-01 4 91229476 91229476 G A CCSER1 Missense_Mutation p.R14Q 0.06 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 4 95210764 95210764 G T SMARCAD1 3'UTR 0.05 TCGA-AD-5900-01 4 96075816 96075816 A G BMPR1B Missense_Mutation p.K531E 0.21 deleterious(0) probably_damaging(0.956) TCGA-AD-5900-01 4 9785349 9785349 G C DRD5 3'UTR 0.23 TCGA-AD-5900-01 4 9785566 9785566 C T DRD5 3'UTR 0.08 TCGA-AD-5900-01 4 995815 995815 G A IDUA Missense_Mutation p.A280T 0.14 deleterious(0.01) benign(0.129) TCGA-AD-5900-01 5 1053489 1053489 G - SLC12A7 Frame_Shift_Del p.N1047Tfs*15 0.27 TCGA-AD-5900-01 5 110407195 110407195 G T TSLP 5'Flank 0.24 TCGA-AD-5900-01 5 110784892 110784892 G T CAMK4 Missense_Mutation p.G206W 0.08 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 5 112174907 112174907 A G APC Missense_Mutation p.S1206G 0.22 benign(0.014) TCGA-AD-5900-01 5 112420978 112420978 G A MCC Silent p.S476S 0.25 TCGA-AD-5900-01 5 115152116 115152116 G A CDO1 5'UTR 0.43 TCGA-AD-5900-01 5 121356050 121356050 C A SRFBP1 Missense_Mutation p.P207H 0.31 deleterious(0.01) possibly_damaging(0.868) TCGA-AD-5900-01 5 121758872 121758872 A C SNCAIP Missense_Mutation p.D147A 0.24 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 5 127666303 127666303 C A FBN2 Missense_Mutation p.C1436F 0.23 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 5 127700330 127700330 A T FBN2 Missense_Mutation p.S797R 0.26 tolerated(0.52) benign(0.021) TCGA-AD-5900-01 5 1278818 1278818 G A TERT Missense_Mutation p.R742C 0.09 deleterious(0) probably_damaging(0.969) TCGA-AD-5900-01 5 131042146 131042146 C T FNIP1 Missense_Mutation p.R291H 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-AD-5900-01 5 131726410 131726410 C T SLC22A5 Missense_Mutation p.L361F 0.05 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 5 132232692 132232692 G A AFF4 Missense_Mutation p.R544C 0.31 tolerated(0.05) probably_damaging(0.999) TCGA-AD-5900-01 5 133480497 133480497 C T TCF7 Intron 0.25 TCGA-AD-5900-01 5 133695598 133695598 T G CDKL3 Missense_Mutation p.H117P 0.09 deleterious(0.01) probably_damaging(1) TCGA-AD-5900-01 5 1338081 1338081 T - CLPTM1L Frame_Shift_Del p.T206Pfs*17 0.25 TCGA-AD-5900-01 5 134074381 134074381 C T CAMLG Missense_Mutation p.A24V 0.36 tolerated_low_confidence(0.07) benign(0.244) TCGA-AD-5900-01 5 134724775 134724775 G A H2AFY Silent p.S3S 0.10 TCGA-AD-5900-01 5 134871470 134871470 C T NEUROG1 5'UTR 0.31 TCGA-AD-5900-01 5 135207744 135207744 C G SLC25A48 Intron 0.50 TCGA-AD-5900-01 5 137506099 137506099 C A BRD8 Splice_Site p.X147_splice 0.08 TCGA-AD-5900-01 5 13786382 13786382 C T DNAH5 Missense_Mutation p.R2909H 0.09 possibly_damaging(0.522) TCGA-AD-5900-01 5 138456742 138456742 A G SIL1 Missense_Mutation p.W76R 0.24 deleterious(0) probably_damaging(0.996) TCGA-AD-5900-01 5 13917279 13917279 A C DNAH5 Missense_Mutation p.C354W 0.23 possibly_damaging(0.892) TCGA-AD-5900-01 5 139495110 139495110 C T PURA 3'UTR 0.07 TCGA-AD-5900-01 5 139905676 139905676 A - ANKHD1 Frame_Shift_Del p.R1532Gfs*5 0.22 TCGA-AD-5900-01 5 140209595 140209595 C T PCDHA6 Missense_Mutation p.A640V 0.08 tolerated_low_confidence(0.08) benign(0.068) TCGA-AD-5900-01 5 140255333 140255333 C T PCDHA12 Silent p.R92R 0.07 TCGA-AD-5900-01 5 140262577 140262577 T - PCDHA13 Frame_Shift_Del p.Y243Tfs*7 0.18 TCGA-AD-5900-01 5 140516694 140516694 G A PCDHB5 Missense_Mutation p.V560M 0.10 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-AD-5900-01 5 140536697 140536697 C T PCDHB17 Missense_Mutation p.P374L 0.38 tolerated_low_confidence(0.37) benign(0.06) TCGA-AD-5900-01 5 140564228 140564228 G A PCDHB16 Silent p.S698S 0.28 TCGA-AD-5900-01 5 140590167 140590167 A G PCDHB12 Missense_Mutation p.Y563C 0.19 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-AD-5900-01 5 140594619 140594619 C T PCDHB13 Silent p.L308L 0.28 TCGA-AD-5900-01 5 140730136 140730136 C T PCDHGB1 Silent p.F103F 0.23 TCGA-AD-5900-01 5 140731517 140731517 G A PCDHGB1 Missense_Mutation p.G564R 0.19 tolerated(0.14) possibly_damaging(0.796) TCGA-AD-5900-01 5 140744887 140744887 C T PCDHGA5 Silent p.S330S 0.25 TCGA-AD-5900-01 5 140753721 140753721 G - PCDHGA6 Frame_Shift_Del p.A26Pfs*20 0.46 TCGA-AD-5900-01 5 140787955 140787955 G A PCDHGB6 Silent p.S62S 0.07 TCGA-AD-5900-01 5 140868995 140868995 G A PCDHGC5 Missense_Mutation p.R63Q 0.08 deleterious(0.02) benign(0.022) TCGA-AD-5900-01 5 141026179 141026179 A G FCHSD1 Silent p.H345H 0.21 TCGA-AD-5900-01 5 146763010 146763010 C A STK32A Missense_Mutation p.L347I 0.26 tolerated(0.3) benign(0.178) TCGA-AD-5900-01 5 14713005 14713005 G A ANKH Missense_Mutation p.A448V 0.22 tolerated(0.15) benign(0.033) TCGA-AD-5900-01 5 147481451 147481451 C T SPINK5 Silent p.C470C 0.30 TCGA-AD-5900-01 5 147719378 147719378 G A SPINK9 3'UTR 0.34 TCGA-AD-5900-01 5 148876409 148876409 T C CSNK1A1 3'Flank 0.11 TCGA-AD-5900-01 5 149212796 149212796 G A PPARGC1B Missense_Mutation p.R387H 0.27 tolerated(1) benign(0) TCGA-AD-5900-01 5 149776102 149776102 C T TCOF1 Missense_Mutation p.R1347W 0.32 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 5 151047075 151047075 C T SPARC Missense_Mutation p.E180K 0.24 tolerated(0.14) benign(0.384) TCGA-AD-5900-01 5 151784413 151784413 C T NMUR2 Missense_Mutation p.A88T 0.30 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 5 153026609 153026609 C T GRIA1 Silent p.P124P 0.28 TCGA-AD-5900-01 5 153432836 153432836 G A MFAP3 Missense_Mutation p.A218T 0.30 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 5 154297547 154297547 G A GEMIN5 Silent p.H539H 0.25 TCGA-AD-5900-01 5 156533949 156533949 G A HAVCR2 Missense_Mutation p.A28V 0.18 tolerated(0.47) benign(0.004) TCGA-AD-5900-01 5 162896725 162896725 G T HMMR Missense_Mutation p.A118S 0.23 tolerated(0.07) benign(0.256) TCGA-AD-5900-01 5 16681451 16681451 C T MYO10 Missense_Mutation p.V1451I 0.05 tolerated(0.23) probably_damaging(0.993) TCGA-AD-5900-01 5 167631389 167631389 A G TENM2 Missense_Mutation p.K1196R 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-AD-5900-01 5 168199835 168199835 G A SLIT3 Silent p.L470L 0.25 TCGA-AD-5900-01 5 169135219 169135219 G A DOCK2 Missense_Mutation p.R477H 0.19 tolerated(0.18) benign(0.022) TCGA-AD-5900-01 5 169310372 169310372 C A FAM196B Silent p.V177V 0.09 TCGA-AD-5900-01 5 171433499 171433499 G T FBXW11 Missense_Mutation p.P3H 0.32 deleterious_low_confidence(0.01) benign(0.054) TCGA-AD-5900-01 5 171777454 171777454 C T SH3PXD2B Missense_Mutation p.A309T 0.22 tolerated(0.54) benign(0.004) TCGA-AD-5900-01 5 172113803 172113803 A G NEURL1B Missense_Mutation p.I515V 0.15 deleterious(0) possibly_damaging(0.883) TCGA-AD-5900-01 5 172659963 172659963 C T NKX2-5 Missense_Mutation p.R195Q 0.20 deleterious(0) probably_damaging(0.968) TCGA-AD-5900-01 5 175957911 175957911 G - RNF44 Frame_Shift_Del p.Q193Sfs*80 0.36 TCGA-AD-5900-01 5 176794441 176794441 C A RGS14 Missense_Mutation p.S170R 0.25 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 5 176923456 176923456 C A PDLIM7 Missense_Mutation p.G20W 0.28 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 5 178413742 178413742 G A GRM6 Nonsense_Mutation p.Q505* 0.23 TCGA-AD-5900-01 5 178771042 178771042 C T ADAMTS2 Missense_Mutation p.R87H 0.29 tolerated(0.08) probably_damaging(0.995) TCGA-AD-5900-01 5 179302135 179302135 C T TBC1D9B Silent p.P651P 0.39 TCGA-AD-5900-01 5 180622324 180622324 G A TRIM7 Missense_Mutation p.R460C 0.29 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 5 180668573 180668573 G A GNB2L1 Silent p.D116D 0.30 TCGA-AD-5900-01 5 19544076 19544076 A - CDH18 Frame_Shift_Del p.F431Sfs*39 0.23 TCGA-AD-5900-01 5 21783502 21783502 G A CDH12 Missense_Mutation p.A453V 0.23 tolerated(0.19) benign(0.071) TCGA-AD-5900-01 5 23527861 23527861 C T PRDM9 Silent p.Y888Y 0.27 TCGA-AD-5900-01 5 235370 235370 C T SDHA Silent p.G392G 0.32 TCGA-AD-5900-01 5 32087964 32087964 C T PDZD2 Silent p.C1470C 0.34 TCGA-AD-5900-01 5 36103960 36103960 A - LMBRD2 3'UTR 0.28 TCGA-AD-5900-01 5 36226584 36226584 A G NADK2 Silent p.A157A 0.22 TCGA-AD-5900-01 5 37213702 37213702 G - C5orf42 Frame_Shift_Del p.P960Lfs*4 0.27 TCGA-AD-5900-01 5 39289038 39289039 TA - C9 Nonsense_Mutation p.Y477* 0.21 TCGA-AD-5900-01 5 44809163 44809163 C T MRPS30 Silent p.C33C 0.38 TCGA-AD-5900-01 5 52214637 52214637 C T ITGA1 Silent p.C688C 0.06 TCGA-AD-5900-01 5 53815022 53815022 C - SNX18 Frame_Shift_Del p.A416Pfs*42 0.20 TCGA-AD-5900-01 5 58272201 58272203 AAG - PDE4D In_Frame_Del p.L602del 0.22 TCGA-AD-5900-01 5 59189020 59189020 G A PDE4D Missense_Mutation p.P144S 0.26 deleterious_low_confidence(0.03) benign(0) TCGA-AD-5900-01 5 60067889 60067889 G T ELOVL7 Silent p.S32S 0.38 TCGA-AD-5900-01 5 63257120 63257120 C T HTR1A Missense_Mutation p.D143N 0.18 tolerated(0.08) probably_damaging(0.999) TCGA-AD-5900-01 5 63257353 63257353 C T HTR1A Missense_Mutation p.R65H 0.22 deleterious(0.03) probably_damaging(1) TCGA-AD-5900-01 5 65449295 65449295 G A SREK1 Missense_Mutation p.A56T 0.28 tolerated(0.19) benign(0.119) TCGA-AD-5900-01 5 66459562 66459562 G T MAST4 Missense_Mutation p.G1519C 0.40 probably_damaging(0.999) TCGA-AD-5900-01 5 68902976 68902976 C T RP11-848G14.2 RNA 0.14 TCGA-AD-5900-01 5 7396475 7396475 C T ADCY2 Silent p.G22G 0.43 TCGA-AD-5900-01 5 79733226 79733227 - T ZFYVE16 Frame_Shift_Ins p.N243* 0.20 TCGA-AD-5900-01 5 82648949 82648949 G T XRCC4 Missense_Mutation p.R300M 0.04 deleterious(0.05) benign(0.004) TCGA-AD-5900-01 5 86665702 86665702 T C RASA1 Silent p.T561T 0.33 TCGA-AD-5900-01 5 89990096 89990096 G T GPR98 Missense_Mutation p.R2508M 0.07 probably_damaging(0.962) TCGA-AD-5900-01 5 9066666 9066666 G A SEMA5A Silent p.G722G 0.24 TCGA-AD-5900-01 5 93788720 93788720 A - KIAA0825 Frame_Shift_Del p.F767Lfs*27 0.19 TCGA-AD-5900-01 5 93798265 93798265 G A KIAA0825 Silent p.V691V 0.22 TCGA-AD-5900-01 5 94956183 94956183 C T GPR150 Silent p.C68C 0.33 TCGA-AD-5900-01 5 95011304 95011304 C T SPATA9 Missense_Mutation p.A64T 0.28 tolerated(0.06) possibly_damaging(0.536) TCGA-AD-5900-01 5 96430305 96430305 A G LIX1 3'UTR 0.42 TCGA-AD-5900-01 5 98236745 98236745 T - CHD1 Frame_Shift_Del p.K210Rfs*39 0.18 TCGA-AD-5900-01 6 100062433 100062433 G A PRDM13 Missense_Mutation p.R641H 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-AD-5900-01 6 108192791 108192791 A - SEC63 3'UTR 0.29 TCGA-AD-5900-01 6 109797433 109797433 G A ZBTB24 Silent p.C383C 0.28 TCGA-AD-5900-01 6 110534291 110534291 C T CDC40 Silent p.G290G 0.21 TCGA-AD-5900-01 6 112393216 112393216 G A TUBE1 Silent p.S386S 0.37 TCGA-AD-5900-01 6 112443346 112443346 C T LAMA4 Missense_Mutation p.R1449Q 0.24 tolerated(0.93) benign(0.002) TCGA-AD-5900-01 6 112671308 112671308 C A RFPL4B Missense_Mutation p.A133D 0.32 deleterious(0.01) benign(0.194) TCGA-AD-5900-01 6 116747770 116747770 G A DSE Silent p.P150P 0.30 TCGA-AD-5900-01 6 11770309 11770309 G A ADTRP Silent p.N54N 0.18 TCGA-AD-5900-01 6 12123115 12123115 A - HIVEP1 Frame_Shift_Del p.R1031Gfs*4 0.20 TCGA-AD-5900-01 6 12130044 12130044 C T HIVEP1 Missense_Mutation p.A2043V 0.31 tolerated(0.27) benign(0.003) TCGA-AD-5900-01 6 122741326 122741326 C T HSF2 Nonsense_Mutation p.Q214* 0.22 TCGA-AD-5900-01 6 126072981 126072982 - CAA HEY2 In_Frame_Ins p.T43dup 0.22 TCGA-AD-5900-01 6 126210860 126210860 G - NCOA7 Frame_Shift_Del p.G555Efs*2 0.21 TCGA-AD-5900-01 6 129475744 129475745 - G LAMA2 Frame_Shift_Ins p.V377Cfs*4 0.21 TCGA-AD-5900-01 6 129813061 129813061 A G LAMA2 Silent p.Q2638Q 0.31 TCGA-AD-5900-01 6 130762494 130762494 T C TMEM200A Silent p.T309T 0.30 TCGA-AD-5900-01 6 134327978 134327978 G A SLC2A12 Silent p.L513L 0.33 TCGA-AD-5900-01 6 134350402 134350402 G A SLC2A12 Silent p.Y187Y 0.26 TCGA-AD-5900-01 6 13642747 13642747 C T RANBP9 Missense_Mutation p.V397I 0.21 tolerated(0.62) probably_damaging(0.972) TCGA-AD-5900-01 6 136500261 136500261 C T PDE7B Silent p.D310D 0.29 TCGA-AD-5900-01 6 136926487 136926487 C T MAP3K5 Missense_Mutation p.A847T 0.05 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 6 137815024 137815024 C T OLIG3 Missense_Mutation p.R95Q 0.18 deleterious(0) possibly_damaging(0.502) TCGA-AD-5900-01 6 138754008 138754008 C T NHSL1 Missense_Mutation p.A496T 0.23 tolerated(1) benign(0.002) TCGA-AD-5900-01 6 143999232 143999232 G T PHACTR2 5'UTR 0.27 TCGA-AD-5900-01 6 144086652 144086652 G A PHACTR2 Missense_Mutation p.E317K 0.27 deleterious_low_confidence(0.03) benign(0.012) TCGA-AD-5900-01 6 147124876 147124876 C T ADGB Intron 0.38 TCGA-AD-5900-01 6 149285691 149285691 C T UST Missense_Mutation p.R225C 0.21 deleterious(0) benign(0.44) TCGA-AD-5900-01 6 151142342 151142342 C T PLEKHG1 Missense_Mutation p.R474W 0.04 deleterious(0.03) possibly_damaging(0.852) TCGA-AD-5900-01 6 151152580 151152580 G A PLEKHG1 Missense_Mutation p.C778Y 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.646) TCGA-AD-5900-01 6 152265534 152265534 C A ESR1 Silent p.S329S 0.25 TCGA-AD-5900-01 6 152477186 152477186 A G SYNE1 Missense_Mutation p.V7946A 0.29 probably_damaging(0.984) TCGA-AD-5900-01 6 152630996 152630996 C T SYNE1 Missense_Mutation p.A5726T 0.32 probably_damaging(0.983) TCGA-AD-5900-01 6 152823800 152823800 G T SYNE1 Missense_Mutation p.H286N 0.31 benign(0.007) TCGA-AD-5900-01 6 153315778 153315778 C - MTRF1L Frame_Shift_Del p.G186Vfs*8 0.18 TCGA-AD-5900-01 6 157488293 157488293 C T ARID1B Missense_Mutation p.A1000V 0.18 possibly_damaging(0.468) TCGA-AD-5900-01 6 158327184 158327184 C T SNX9 Silent p.G215G 0.34 TCGA-AD-5900-01 6 158735242 158735242 G A TULP4 Missense_Mutation p.R65H 0.10 deleterious(0.02) benign(0.111) TCGA-AD-5900-01 6 159462441 159462441 C A TAGAP Missense_Mutation p.G141V 0.21 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 6 159655087 159655087 G C FNDC1 Missense_Mutation p.E1181D 0.28 tolerated_low_confidence(0.25) unknown(0) TCGA-AD-5900-01 6 163987807 163987807 G T QKI Missense_Mutation p.R330M 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AD-5900-01 6 167571310 167571310 G T GPR31 Missense_Mutation p.P4T 0.35 tolerated(0.12) benign(0.005) TCGA-AD-5900-01 6 169639696 169639696 T C THBS2 Missense_Mutation p.H376R 0.24 tolerated(0.52) benign(0.001) TCGA-AD-5900-01 6 170594750 170594750 A G DLL1 Missense_Mutation p.C257R 0.19 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 6 17675210 17675210 A - NUP153 Frame_Shift_Del p.Y260Ifs*14 0.22 TCGA-AD-5900-01 6 17834246 17834246 T A KIF13A Missense_Mutation p.K404N 0.32 deleterious(0.01) benign(0.244) TCGA-AD-5900-01 6 20113188 20113188 C T MBOAT1 Silent p.L376L 0.23 TCGA-AD-5900-01 6 20152983 20152983 G T MBOAT1 Nonsense_Mutation p.C39* 0.09 TCGA-AD-5900-01 6 22290423 22290423 T C PRL Missense_Mutation p.M158V 0.23 tolerated(0.32) benign(0.105) TCGA-AD-5900-01 6 22570331 22570331 C T HDGFL1 Missense_Mutation p.A176V 0.23 tolerated_low_confidence(0.21) possibly_damaging(0.499) TCGA-AD-5900-01 6 24429304 24429304 G A GPLD1 Nonsense_Mutation p.R827* 0.33 TCGA-AD-5900-01 6 25914849 25914849 C A SLC17A2 Missense_Mutation p.Q371H 0.29 tolerated(0.54) benign(0.104) TCGA-AD-5900-01 6 26043596 26043596 G A HIST1H2BB Missense_Mutation p.T97M 0.27 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-AD-5900-01 6 26413431 26413431 C A BTN3A1 Silent p.P351P 0.27 TCGA-AD-5900-01 6 27100356 27100356 C T HIST1H2BJ Silent p.K58K 0.24 TCGA-AD-5900-01 6 27101078 27101078 G A HIST1H2AG Silent p.K76K 0.29 TCGA-AD-5900-01 6 27278463 27278463 G - POM121L2 Frame_Shift_Del p.P496Qfs*17 0.17 TCGA-AD-5900-01 6 29430124 29430124 A G OR2H1 Missense_Mutation p.N193S 0.30 tolerated(0.07) benign(0.137) TCGA-AD-5900-01 6 2949168 2949168 C T SERPINB6 Missense_Mutation p.E237K 0.22 tolerated(0.09) benign(0.077) TCGA-AD-5900-01 6 29524058 29524058 T - UBD Frame_Shift_Del p.I33Sfs*25 0.25 TCGA-AD-5900-01 6 30032471 30032471 T A ZNRD1 Silent p.S126S 0.28 TCGA-AD-5900-01 6 30309925 30309925 C A TRIM39 Silent p.T482T 0.24 TCGA-AD-5900-01 6 30640499 30640499 G T DHX16 Silent p.A40A 0.23 TCGA-AD-5900-01 6 31239102 31239102 A G HLA-C Missense_Mutation p.S123P 0.18 deleterious_low_confidence(0.01) benign(0.174) TCGA-AD-5900-01 6 31322962 31322963 - A HLA-B Frame_Shift_Ins p.V312Cfs*22 0.52 TCGA-AD-5900-01 6 31599780 31599780 C T PRRC2A Silent p.S1110S 0.26 TCGA-AD-5900-01 6 31962351 31962351 C A C4A Missense_Mutation p.P890H 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-AD-5900-01 6 32041461 32041461 C T RNA5SP206 3'Flank 0.28 TCGA-AD-5900-01 6 32918306 32918306 C T HLA-DMA Silent p.P121P 0.27 TCGA-AD-5900-01 6 32975853 32975853 C T HLA-DOA Missense_Mutation p.A90T 0.36 deleterious(0.01) benign(0.07) TCGA-AD-5900-01 6 33387955 33387955 T A SYNGAP1 5'UTR 0.44 TCGA-AD-5900-01 6 33636344 33636344 G A ITPR3 Missense_Mutation p.V647I 0.34 tolerated(0.17) benign(0.127) TCGA-AD-5900-01 6 33740551 33740551 G A LEMD2 Missense_Mutation p.R456C 0.11 deleterious(0) probably_damaging(0.991) TCGA-AD-5900-01 6 3410515 3410515 C T SLC22A23 Missense_Mutation p.V274M 0.26 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 6 34208675 34208675 G A HMGA1 Missense_Mutation p.A40T 0.31 tolerated_low_confidence(0.33) benign(0.007) TCGA-AD-5900-01 6 35216473 35216473 C A SCUBE3 Silent p.P991P 0.22 TCGA-AD-5900-01 6 36181729 36181729 C - BRPF3 Frame_Shift_Del p.P854Rfs*6 0.26 TCGA-AD-5900-01 6 36189953 36189953 C T BRPF3 Missense_Mutation p.T1031M 0.27 tolerated(0.12) benign(0.013) TCGA-AD-5900-01 6 36713264 36713264 C T CPNE5 Missense_Mutation p.C410Y 0.21 tolerated(0.23) benign(0.049) TCGA-AD-5900-01 6 37328234 37328234 C T RNF8 Nonsense_Mutation p.R42* 0.26 TCGA-AD-5900-01 6 38749075 38749075 C T DNAH8 Missense_Mutation p.P512S 0.23 probably_damaging(0.989) TCGA-AD-5900-01 6 398901 398901 A C IRF4 Silent p.P237P 0.11 TCGA-AD-5900-01 6 41766458 41766458 G A USP49 Missense_Mutation p.A627V 0.26 tolerated_low_confidence(0.06) benign(0.12) TCGA-AD-5900-01 6 41897994 41897995 - G BYSL Frame_Shift_Ins p.V188Gfs*7 0.14 TCGA-AD-5900-01 6 42906510 42906511 - C CNPY3 Frame_Shift_Ins p.D276* 0.27 TCGA-AD-5900-01 6 43015993 43015993 T C CUL7 Splice_Site p.X772_splice 0.25 TCGA-AD-5900-01 6 43111177 43111177 G A PTK7 Silent p.S698S 0.38 TCGA-AD-5900-01 6 43273607 43273607 T C CRIP3 Missense_Mutation p.N187S 0.21 deleterious(0.04) probably_damaging(0.996) TCGA-AD-5900-01 6 43402483 43402483 T C ABCC10 Missense_Mutation p.L502P 0.23 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 6 43970673 43970673 G A C6orf223 Missense_Mutation p.R180H 0.42 deleterious_low_confidence(0) unknown(0) TCGA-AD-5900-01 6 46128930 46128930 G A ENPP5 3'UTR 0.42 TCGA-AD-5900-01 6 46135862 46135862 A G ENPP5 Silent p.V46V 0.21 TCGA-AD-5900-01 6 486711 486711 G A EXOC2 Missense_Mutation p.T912I 0.27 tolerated(0.21) benign(0.007) TCGA-AD-5900-01 6 52268989 52268991 CTT - PAQR8 In_Frame_Del p.F329del 0.23 TCGA-AD-5900-01 6 52660986 52660986 C T GSTA1 Missense_Mutation p.R89K 0.21 tolerated(0.08) benign(0.386) TCGA-AD-5900-01 6 52661071 52661071 C T GSTA1 Missense_Mutation p.D61N 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-AD-5900-01 6 52945766 52945766 C T FBXO9 Silent p.Y146Y 0.26 TCGA-AD-5900-01 6 55924911 55924911 G A COL21A1 Missense_Mutation p.P838L 0.30 tolerated(0.1) benign(0.002) TCGA-AD-5900-01 6 56470576 56470576 A G DST Intron 0.31 TCGA-AD-5900-01 6 56498986 56498986 A T DST Missense_Mutation p.S652T 0.24 benign(0.075) TCGA-AD-5900-01 6 56505235 56505235 C T DST Silent p.G195G 0.31 TCGA-AD-5900-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.27 TCGA-AD-5900-01 6 64416646 64416646 T C PHF3 Silent p.V1197V 0.27 TCGA-AD-5900-01 6 70778335 70778335 C - COL19A1 Frame_Shift_Del p.Q399Kfs*59 0.27 TCGA-AD-5900-01 6 72003069 72003069 G A OGFRL1 Missense_Mutation p.R103Q 0.27 deleterious(0.02) probably_damaging(0.963) TCGA-AD-5900-01 6 72011643 72011643 A - OGFRL1 Frame_Shift_Del p.K418Rfs*32 0.36 TCGA-AD-5900-01 6 72892269 72892269 G A RIMS1 Silent p.P365P 0.28 TCGA-AD-5900-01 6 73100433 73100433 G T RIMS1 Missense_Mutation p.E1500D 0.26 deleterious(0.01) benign(0.152) TCGA-AD-5900-01 6 7584346 7584346 G A DSP Missense_Mutation p.R2284Q 0.21 probably_damaging(0.991) TCGA-AD-5900-01 6 76344521 76344521 C G SENP6 Missense_Mutation p.A151G 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-AD-5900-01 6 78172781 78172781 G A HTR1B Missense_Mutation p.R114C 0.20 deleterious(0.02) possibly_damaging(0.901) TCGA-AD-5900-01 6 79770396 79770396 C T PHIP Missense_Mutation p.R110H 0.25 deleterious(0) probably_damaging(0.964) TCGA-AD-5900-01 6 83075811 83075811 G A TPBG Missense_Mutation p.R378H 0.28 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 6 83810526 83810526 C T DOPEY1 Missense_Mutation p.R81W 0.29 deleterious(0.01) probably_damaging(0.971) TCGA-AD-5900-01 6 84834981 84834981 T G KIAA1009 Silent p.T1340T 0.05 TCGA-AD-5900-01 6 84884558 84884558 G A KIAA1009 Missense_Mutation p.A638V 0.27 tolerated(1) benign(0.001) TCGA-AD-5900-01 6 88853781 88853781 G A CNR1 Nonsense_Mutation p.R405* 0.31 TCGA-AD-5900-01 6 90338912 90338912 G A ANKRD6 Missense_Mutation p.A523T 0.22 tolerated(0.46) benign(0.002) TCGA-AD-5900-01 6 94067991 94067991 G T EPHA7 Missense_Mutation p.P324Q 0.24 deleterious(0.04) possibly_damaging(0.572) TCGA-AD-5900-01 6 96657547 96657547 T - FUT9 3'UTR 0.22 TCGA-AD-5900-01 6 99285816 99285816 T - POU3F2 3'UTR 0.22 TCGA-AD-5900-01 6 99848583 99848584 - T PNISR Frame_Shift_Ins p.H751Tfs*5 0.39 TCGA-AD-5900-01 7 100028513 100028513 C - MEPCE Frame_Shift_Del p.L293Yfs*145 0.41 TCGA-AD-5900-01 7 100084739 100084739 C A NYAP1 Missense_Mutation p.P122T 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 7 100225243 100225243 G A TFR2 Missense_Mutation p.T575M 0.30 deleterious(0.03) probably_damaging(0.981) TCGA-AD-5900-01 7 100320785 100320785 C A EPO 3'UTR 0.21 TCGA-AD-5900-01 7 100364214 100364214 C T ZAN Missense_Mutation p.R1513C 0.21 unknown(0) TCGA-AD-5900-01 7 100469184 100469184 C T TRIP6 Missense_Mutation p.A340V 0.25 deleterious(0.01) benign(0.16) TCGA-AD-5900-01 7 100486520 100486522 AGA - UFSP1 In_Frame_Del p.F124del 0.27 TCGA-AD-5900-01 7 100859237 100859237 G A PLOD3 Silent p.D189D 0.31 TCGA-AD-5900-01 7 101844953 101844953 C T CUX1 Silent p.P803P 0.24 TCGA-AD-5900-01 7 101943973 101943973 C T SH2B2 Missense_Mutation p.R90W 0.15 deleterious(0) possibly_damaging(0.828) TCGA-AD-5900-01 7 102087414 102087414 C T ORAI2 Missense_Mutation p.T227M 0.32 tolerated(0.22) probably_damaging(0.998) TCGA-AD-5900-01 7 102107870 102107870 G A LRWD1 Missense_Mutation p.A173T 0.32 tolerated(0.13) probably_damaging(0.998) TCGA-AD-5900-01 7 1022852 1022852 C A CYP2W1 Missense_Mutation p.A2D 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-AD-5900-01 7 103805691 103805692 - T ORC5 Frame_Shift_Ins p.H344Tfs*25 0.19 TCGA-AD-5900-01 7 107236418 107236418 T A BCAP29 Missense_Mutation p.F151I 0.40 deleterious(0.04) benign(0.407) TCGA-AD-5900-01 7 107743598 107743598 G A LAMB4 Silent p.G357G 0.36 TCGA-AD-5900-01 7 112424778 112424778 A G TMEM168 Missense_Mutation p.Y35H 0.30 tolerated(0.16) probably_damaging(0.989) TCGA-AD-5900-01 7 115850756 115850756 G A TES 5'UTR 0.32 TCGA-AD-5900-01 7 117365285 117365285 A G CTTNBP2 Missense_Mutation p.V1361A 0.29 deleterious(0.03) benign(0.405) TCGA-AD-5900-01 7 121000151 121000151 G A FAM3C Missense_Mutation p.A138V 0.27 tolerated(0.16) benign(0.038) TCGA-AD-5900-01 7 121701164 121701164 C A PTPRZ1 Missense_Mutation p.L2280I 0.26 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 7 126173275 126173275 T C GRM8 Missense_Mutation p.I721V 0.24 tolerated(0.18) benign(0.017) TCGA-AD-5900-01 7 130023626 130023626 G A CPA1 Silent p.T229T 0.10 TCGA-AD-5900-01 7 135277855 135277855 G A NUP205 Missense_Mutation p.R582H 0.25 deleterious(0.02) probably_damaging(0.922) TCGA-AD-5900-01 7 135304299 135304299 G T NUP205 Missense_Mutation p.E1364D 0.09 tolerated(0.55) benign(0.004) TCGA-AD-5900-01 7 136700234 136700234 C A CHRM2 Missense_Mutation p.H208N 0.32 tolerated(0.09) benign(0.014) TCGA-AD-5900-01 7 138239520 138239520 C T TRIM24 Missense_Mutation p.P447S 0.26 deleterious(0.01) benign(0.128) TCGA-AD-5900-01 7 138603663 138603663 G A KIAA1549 Missense_Mutation p.R237C 0.28 tolerated_low_confidence(0.07) benign(0.443) TCGA-AD-5900-01 7 138604074 138604074 C T KIAA1549 Missense_Mutation p.G100S 0.29 tolerated(0.1) benign(0.139) TCGA-AD-5900-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-AD-5900-01 7 141352829 141352829 G T AGK 3'UTR 0.33 TCGA-AD-5900-01 7 141755524 141755524 G - MGAM Frame_Shift_Del 0.20 TCGA-AD-5900-01 7 142562177 142562177 C T EPHB6 Missense_Mutation p.R207C 0.28 deleterious(0) probably_damaging(0.932) TCGA-AD-5900-01 7 146997279 146997279 C G CNTNAP2 Silent p.A465A 0.24 TCGA-AD-5900-01 7 147092872 147092872 G T CNTNAP2 Missense_Mutation p.R557I 0.22 deleterious(0) probably_damaging(0.957) TCGA-AD-5900-01 7 147336244 147336244 G A CNTNAP2 Silent p.T648T 0.32 TCGA-AD-5900-01 7 147869567 147869567 A G CNTNAP2 Missense_Mutation p.K1003E 0.25 tolerated(0.26) benign(0.045) TCGA-AD-5900-01 7 148718185 148718185 T C PDIA4 Missense_Mutation p.D48G 0.27 tolerated(0.1) benign(0.014) TCGA-AD-5900-01 7 148921280 148921280 G A ZNF282 Silent p.S519S 0.19 TCGA-AD-5900-01 7 149129714 149129714 T C ZNF777 Missense_Mutation p.E550G 0.07 deleterious(0) possibly_damaging(0.718) TCGA-AD-5900-01 7 149427527 149427527 G A KRBA1 Missense_Mutation p.R671H 0.26 tolerated(0.68) possibly_damaging(0.706) TCGA-AD-5900-01 7 149484959 149484959 G - SSPO RNA 0.30 TCGA-AD-5900-01 7 149506196 149506196 G A SSPO RNA 0.22 TCGA-AD-5900-01 7 150656805 150656805 C T KCNH2 Silent p.L109L 0.33 TCGA-AD-5900-01 7 150706508 150706508 C A NOS3 Missense_Mutation p.L783M 0.20 deleterious(0.02) possibly_damaging(0.883) TCGA-AD-5900-01 7 150746096 150746097 - G ASIC3 Frame_Shift_Ins p.M44Dfs*19 0.18 TCGA-AD-5900-01 7 150939812 150939812 T C SMARCD3 Missense_Mutation p.M151V 0.28 tolerated(0.55) benign(0.01) TCGA-AD-5900-01 7 1515624 1515624 A G INTS1 Missense_Mutation p.L1821P 0.23 deleterious(0.03) benign(0.027) TCGA-AD-5900-01 7 154585886 154585886 G A DPP6 Missense_Mutation p.D412N 0.08 tolerated(0.11) benign(0.085) TCGA-AD-5900-01 7 154863245 154863245 G A HTR5A Silent p.P212P 0.16 TCGA-AD-5900-01 7 156976656 156976656 C T UBE3C Missense_Mutation p.A359V 0.30 tolerated(0.22) benign(0.001) TCGA-AD-5900-01 7 1786588 1786588 C T ELFN1 Missense_Mutation p.R786W 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-AD-5900-01 7 19156347 19156347 C T TWIST1 Missense_Mutation p.A200T 0.24 tolerated(0.31) benign(0.053) TCGA-AD-5900-01 7 2290568 2290568 G A NUDT1 Missense_Mutation p.G158R 0.29 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 7 23854762 23854762 G A STK31 Splice_Site p.X921_splice 0.26 TCGA-AD-5900-01 7 2473530 2473530 G A CHST12 3'UTR 0.23 TCGA-AD-5900-01 7 24874339 24874339 A G OSBPL3 Silent p.S504S 0.30 TCGA-AD-5900-01 7 27141005 27141005 C T HOXA2 Silent p.E157E 0.25 TCGA-AD-5900-01 7 27187304 27187306 AAG - HOXA6 In_Frame_Del p.F21del 0.27 TCGA-AD-5900-01 7 27285903 27285903 G A EVX1 Silent p.A361A 0.30 TCGA-AD-5900-01 7 2771156 2771156 G A GNA12 Missense_Mutation p.R269W 0.26 deleterious(0) probably_damaging(0.99) TCGA-AD-5900-01 7 29111432 29111432 C T CPVL Missense_Mutation p.C274Y 0.07 tolerated(0.58) probably_damaging(0.917) TCGA-AD-5900-01 7 29134726 29134726 G A CPVL Missense_Mutation p.L146F 0.11 tolerated(0.88) benign(0.058) TCGA-AD-5900-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.33 TCGA-AD-5900-01 7 34979762 34979762 T A DPY19L1 Intron 0.21 TCGA-AD-5900-01 7 38502595 38502595 G A AMPH Missense_Mutation p.R290W 0.30 deleterious(0.02) probably_damaging(1) TCGA-AD-5900-01 7 44155842 44155842 G A POLD2 Silent p.G297G 0.13 TCGA-AD-5900-01 7 44806093 44806093 C T ZMIZ2 Missense_Mutation p.A829V 0.29 tolerated(0.3) benign(0.027) TCGA-AD-5900-01 7 45077975 45077975 C T CCM2 Missense_Mutation p.R73C 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-AD-5900-01 7 45148786 45148786 A G TBRG4 Silent p.A17A 0.27 TCGA-AD-5900-01 7 47842892 47842892 G A PKD1L1 Silent p.C2626C 0.23 TCGA-AD-5900-01 7 4917247 4917247 G A RADIL Missense_Mutation p.T175I 0.25 deleterious(0) probably_damaging(0.948) TCGA-AD-5900-01 7 5391706 5391706 G A TNRC18 Silent p.D1738D 0.09 TCGA-AD-5900-01 7 5401344 5401344 G A TNRC18 Silent p.R1514R 0.21 TCGA-AD-5900-01 7 5540509 5540509 G A FBXL18 Missense_Mutation p.S464L 0.23 tolerated(0.3) benign(0.001) TCGA-AD-5900-01 7 56148781 56148781 G A PHKG1 Missense_Mutation p.A409V 0.24 tolerated(0.2) benign(0.018) TCGA-AD-5900-01 7 6189845 6189845 G A USP42 Missense_Mutation p.G673D 0.16 tolerated(0.07) possibly_damaging(0.901) TCGA-AD-5900-01 7 6194574 6194574 A G USP42 Missense_Mutation p.D1130G 0.20 deleterious(0.01) benign(0.121) TCGA-AD-5900-01 7 63505827 63505827 G A ZNF727 5'UTR 0.18 TCGA-AD-5900-01 7 64152317 64152317 G A ZNF107 5'UTR 0.22 TCGA-AD-5900-01 7 65156771 65156771 T - INTS4L2 RNA 0.31 TCGA-AD-5900-01 7 72419181 72419181 T C POM121 3'UTR 0.19 TCGA-AD-5900-01 7 72742434 72742434 G - FKBP6 Frame_Shift_Del p.G3Efs*4 0.21 TCGA-AD-5900-01 7 73461083 73461083 C T ELN Missense_Mutation p.A210V 0.20 unknown(0) TCGA-AD-5900-01 7 75045952 75045952 C T POM121C 3'Flank 0.29 TCGA-AD-5900-01 7 76058670 76058670 C T ZP3 Intron 0.25 TCGA-AD-5900-01 7 76239352 76239352 C T POMZP3 3'UTR 0.34 TCGA-AD-5900-01 7 76958657 76958657 C T GSAP Missense_Mutation p.A576T 0.26 tolerated(0.38) possibly_damaging(0.85) TCGA-AD-5900-01 7 76984731 76984731 A G GSAP Silent p.I379I 0.26 TCGA-AD-5900-01 7 77807330 77807330 G A MAGI2 Missense_Mutation p.P801S 0.24 tolerated(0.17) possibly_damaging(0.472) TCGA-AD-5900-01 7 81388120 81388120 C A HGF Missense_Mutation p.K85N 0.29 deleterious(0.01) probably_damaging(0.939) TCGA-AD-5900-01 7 82072877 82072877 C T CACNA2D1 5'UTR 0.60 TCGA-AD-5900-01 7 82579900 82579900 G A PCLO Missense_Mutation p.A3335V 0.30 unknown(0) TCGA-AD-5900-01 7 86569340 86569340 T - KIAA1324L Frame_Shift_Del p.N278Ifs*47 0.25 TCGA-AD-5900-01 7 86978446 86978446 C A CROT Missense_Mutation p.P21Q 0.22 deleterious(0) probably_damaging(0.972) TCGA-AD-5900-01 7 87133728 87133728 C T ABCB1 Missense_Mutation p.R1225H 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-AD-5900-01 7 87175276 87175276 A G ABCB1 Missense_Mutation p.V597A 0.29 deleterious(0.04) benign(0.04) TCGA-AD-5900-01 7 87811337 87811337 T C ADAM22 Silent p.T858T 0.17 TCGA-AD-5900-01 7 90894707 90894707 C T FZD1 Missense_Mutation p.S171F 0.25 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 7 91746472 91746472 C T CYP51A1 Missense_Mutation p.V413I 0.08 tolerated(0.24) benign(0.012) TCGA-AD-5900-01 7 92099209 92099209 G A ERVW-1 Missense_Mutation p.R163C 0.23 deleterious(0.01) possibly_damaging(0.665) TCGA-AD-5900-01 7 95709788 95709788 T C DYNC1I1 Silent p.Y605Y 0.22 TCGA-AD-5900-01 7 96318150 96318150 T - SHFM1 3'UTR 0.14 TCGA-AD-5900-01 7 97875402 97875402 G T TECPR1 Silent p.S19S 0.40 TCGA-AD-5900-01 7 99631626 99631626 C T ZKSCAN1 Nonsense_Mutation p.R500* 0.27 TCGA-AD-5900-01 7 99704905 99704905 G A TAF6 Silent p.S703S 0.38 TCGA-AD-5900-01 7 99707697 99707697 C A TAF6 Splice_Site p.X424_splice 0.32 TCGA-AD-5900-01 8 100899842 100899842 C T COX6C Missense_Mutation p.R40H 0.61 tolerated(0.14) benign(0.141) TCGA-AD-5900-01 8 101146259 101146259 G C FBXO43 Missense_Mutation p.T633S 0.70 tolerated(0.33) benign(0.016) TCGA-AD-5900-01 8 104831715 104831715 G - RIMS2 Intron 0.11 TCGA-AD-5900-01 8 106801004 106801004 C A ZFPM2 Silent p.A197A 0.21 TCGA-AD-5900-01 8 106814983 106814983 C T ZFPM2 Silent p.D891D 0.26 TCGA-AD-5900-01 8 110984579 110984579 G A KCNV1 Missense_Mutation p.T300I 0.65 tolerated(0.08) benign(0.172) TCGA-AD-5900-01 8 116599372 116599372 C T TRPS1 Silent p.A852A 0.82 TCGA-AD-5900-01 8 11667306 11667306 C T FDFT1 Missense_Mutation p.R110W 0.07 deleterious(0.03) possibly_damaging(0.664) TCGA-AD-5900-01 8 11831592 11831592 G A DEFB136 Missense_Mutation p.R31C 0.69 deleterious(0) probably_damaging(0.968) TCGA-AD-5900-01 8 124033691 124033691 C A DERL1 Missense_Mutation p.G168C 0.69 deleterious(0) probably_damaging(0.995) TCGA-AD-5900-01 8 124121727 124121727 C T TBC1D31 Missense_Mutation p.R435C 0.15 deleterious(0) probably_damaging(0.998) TCGA-AD-5900-01 8 126096146 126096146 G T KIAA0196 5'UTR 0.64 TCGA-AD-5900-01 8 12883967 12883967 G - KIAA1456 3'UTR 0.59 TCGA-AD-5900-01 8 12952624 12952624 G A DLC1 Nonsense_Mutation p.R1100* 0.09 TCGA-AD-5900-01 8 13357027 13357027 T C DLC1 Missense_Mutation p.D185G 0.65 tolerated_low_confidence(0.31) benign(0) TCGA-AD-5900-01 8 133764220 133764220 C G TMEM71 Missense_Mutation p.G42A 0.63 deleterious(0.03) possibly_damaging(0.894) TCGA-AD-5900-01 8 141461422 141461422 G A TRAPPC9 Silent p.L115L 0.75 TCGA-AD-5900-01 8 142151514 142151514 G - DENND3 Intron 0.49 TCGA-AD-5900-01 8 143623556 143623556 G A BAI1 Missense_Mutation p.G1321S 0.28 tolerated(0.36) possibly_damaging(0.862) TCGA-AD-5900-01 8 143745838 143745838 C T JRK RNA 0.29 TCGA-AD-5900-01 8 143867880 143867880 C - LY6D Splice_Site p.X18_splice 0.16 TCGA-AD-5900-01 8 144358793 144358793 A G GLI4 Missense_Mutation p.H317R 0.61 deleterious(0) probably_damaging(0.997) TCGA-AD-5900-01 8 144945050 144945050 G A EPPK1 Missense_Mutation p.T791M 0.24 probably_damaging(0.999) TCGA-AD-5900-01 8 144996317 144996317 G A PLEC Missense_Mutation p.R2695W 0.76 probably_damaging(0.96) TCGA-AD-5900-01 8 145268003 145268003 C T MROH1 Intron 0.63 TCGA-AD-5900-01 8 145556903 145556903 C T SCRT1 Missense_Mutation p.G331S 0.24 tolerated(0.27) unknown(0) TCGA-AD-5900-01 8 145620486 145620486 C T CPSF1 Missense_Mutation p.E1061K 0.79 deleterious(0.02) benign(0.285) TCGA-AD-5900-01 8 145623325 145623325 G - CPSF1 Frame_Shift_Del p.V640Wfs*20 0.32 TCGA-AD-5900-01 8 145668150 145668150 C T TONSL Missense_Mutation p.R163H 0.08 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 8 145676014 145676014 G A CYHR1 Silent p.C279C 0.72 TCGA-AD-5900-01 8 146015299 146015299 G A RPL8 Missense_Mutation p.P222S 0.60 tolerated(0.06) possibly_damaging(0.563) TCGA-AD-5900-01 8 146157349 146157349 C T ZNF16 Missense_Mutation p.R275Q 0.67 tolerated(0.14) benign(0.017) TCGA-AD-5900-01 8 17612375 17612375 G T MTUS1 Silent p.S314S 0.05 TCGA-AD-5900-01 8 18257913 18257913 C T NAT2 Missense_Mutation p.P134S 0.17 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 8 1905019 1905019 G T ARHGEF10 Missense_Mutation p.A1209S 0.09 tolerated(0.74) benign(0.015) TCGA-AD-5900-01 8 20008223 20008223 G A SLC18A1 Missense_Mutation p.L350F 0.65 tolerated(0.06) probably_damaging(0.944) TCGA-AD-5900-01 8 21859658 21859658 G T XPO7 Missense_Mutation p.D940Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-AD-5900-01 8 21964983 21964983 C T NUDT18 Missense_Mutation p.G267D 0.72 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 8 22034502 22034502 G A BMP1 Missense_Mutation p.G194R 0.69 tolerated(0.14) benign(0.059) TCGA-AD-5900-01 8 23049287 23049288 TC - TNFRSF10A Frame_Shift_Del p.K443Dfs*39 0.52 TCGA-AD-5900-01 8 24771448 24771448 G A NEFM Missense_Mutation p.V48M 0.23 deleterious(0.04) unknown(0) TCGA-AD-5900-01 8 25257429 25257429 T - DOCK5 Frame_Shift_Del p.F1571Lfs*19 0.17 TCGA-AD-5900-01 8 25290078 25290078 T - KCTD9 Frame_Shift_Del p.N332Mfs*4 0.47 TCGA-AD-5900-01 8 27094256 27094256 C - STMN4 3'UTR 0.67 TCGA-AD-5900-01 8 27098728 27098728 T C STMN4 Missense_Mutation p.E81G 0.20 deleterious(0) possibly_damaging(0.907) TCGA-AD-5900-01 8 27528550 27528550 T C SCARA3 Silent p.P501P 0.62 TCGA-AD-5900-01 8 28997630 28997630 C T KIF13B Missense_Mutation p.A855T 0.07 tolerated(0.72) benign(0.001) TCGA-AD-5900-01 8 30703516 30703516 T - TEX15 Frame_Shift_Del p.A1007Lfs*12 0.09 TCGA-AD-5900-01 8 30853885 30853885 A - PURG 3'UTR 0.67 TCGA-AD-5900-01 8 3226811 3226811 T C CSMD1 Missense_Mutation p.N955S 0.16 probably_damaging(0.998) TCGA-AD-5900-01 8 37691605 37691605 G - GPR124 Frame_Shift_Del p.A525Pfs*12 0.52 TCGA-AD-5900-01 8 38646225 38646225 G A TACC1 Silent p.S55S 0.68 TCGA-AD-5900-01 8 38873645 38873645 T C ADAM9 Silent p.C114C 0.20 TCGA-AD-5900-01 8 41399678 41399678 G T GINS4 3'UTR 0.13 TCGA-AD-5900-01 8 42623559 42623559 C T CHRNA6 Silent p.K5K 0.64 TCGA-AD-5900-01 8 442474 442474 G A TDRP Silent p.R161R 0.20 TCGA-AD-5900-01 8 48774662 48774662 G A PRKDC Silent p.I1981I 0.21 TCGA-AD-5900-01 8 54912502 54912502 T C TCEA1 Intron 0.21 TCGA-AD-5900-01 8 56864542 56864542 G A LYN Missense_Mutation p.V169I 0.40 tolerated(0.54) benign(0.002) TCGA-AD-5900-01 8 57358314 57358314 C T PENK Intron 0.68 TCGA-AD-5900-01 8 614608 614608 C T ERICH1 Missense_Mutation p.D443N 0.23 deleterious(0) benign(0.277) TCGA-AD-5900-01 8 70617403 70617403 T - SLCO5A1 Frame_Shift_Del p.K495Nfs*2 0.42 TCGA-AD-5900-01 8 72111458 72111458 C T EYA1 3'UTR 0.78 TCGA-AD-5900-01 8 74526095 74526096 - T STAU2 Frame_Shift_Ins p.L259Tfs*15 0.42 TCGA-AD-5900-01 8 74868172 74868172 G A TCEB1 Missense_Mutation p.T41M 0.05 tolerated(0.05) possibly_damaging(0.703) TCGA-AD-5900-01 8 77617337 77617337 A - ZFHX4 Frame_Shift_Del p.K340Nfs*15 0.48 TCGA-AD-5900-01 8 77895466 77895466 T - PEX2 3'UTR 0.64 TCGA-AD-5900-01 8 88885440 88885440 G A DCAF4L2 Missense_Mutation p.R254C 0.64 deleterious(0) probably_damaging(0.991) TCGA-AD-5900-01 8 95444607 95444607 G A FSBP Missense_Mutation p.R218W 0.05 deleterious_low_confidence(0.01) benign(0.249) TCGA-AD-5900-01 8 95837226 95837226 G A INTS8 Missense_Mutation p.R79H 0.70 deleterious(0.03) probably_damaging(0.999) TCGA-AD-5900-01 8 99076895 99076895 G A C8orf47 5'UTR 0.14 TCGA-AD-5900-01 9 102784353 102784353 G A ERP44 Missense_Mutation p.R148W 0.26 tolerated(0.05) benign(0.031) TCGA-AD-5900-01 9 103348277 103348277 T - MURC Frame_Shift_Del p.D215Tfs*4 0.09 TCGA-AD-5900-01 9 104171173 104171174 AA - ZNF189 Frame_Shift_Del p.K375Rfs*26 0.15 TCGA-AD-5900-01 9 107298134 107298134 G T OR13C3 Missense_Mutation p.L321M 0.25 tolerated(0.07) probably_damaging(0.993) TCGA-AD-5900-01 9 110068775 110068775 C A RAD23B Missense_Mutation p.P115H 0.28 deleterious(0.01) unknown(0) TCGA-AD-5900-01 9 110250089 110250090 - T KLF4 Frame_Shift_Ins p.S196Ifs*61 0.28 TCGA-AD-5900-01 9 111746669 111746669 T C CTNNAL1 Silent p.A229A 0.27 TCGA-AD-5900-01 9 112199239 112199239 T C PTPN3 Missense_Mutation p.Q200R 0.22 tolerated(0.06) possibly_damaging(0.794) TCGA-AD-5900-01 9 113547110 113547110 C T MUSK Missense_Mutation p.T467M 0.10 tolerated(0.22) benign(0.005) TCGA-AD-5900-01 9 114860936 114860936 C T SUSD1 Missense_Mutation p.V430I 0.26 tolerated(0.39) benign(0.052) TCGA-AD-5900-01 9 116624 116626 GAA - FOXD4 3'UTR 0.19 TCGA-AD-5900-01 9 116825032 116825032 G A AMBP Missense_Mutation p.R204W 0.26 deleterious(0) probably_damaging(0.984) TCGA-AD-5900-01 9 116854897 116854897 C T KIF12 Missense_Mutation p.G403D 0.33 tolerated_low_confidence(0.54) benign(0.002) TCGA-AD-5900-01 9 118138977 118138977 C A DEC1 5'UTR 0.29 TCGA-AD-5900-01 9 123201869 123201869 A G CDK5RAP2 Missense_Mutation p.V1177A 0.24 deleterious(0.01) probably_damaging(0.93) TCGA-AD-5900-01 9 123206011 123206011 G - CDK5RAP2 Frame_Shift_Del p.P1012Lfs*62 0.23 TCGA-AD-5900-01 9 123914741 123914741 T - CNTRL Intron 0.20 TCGA-AD-5900-01 9 124534883 124534883 C T DAB2IP Intron 0.28 TCGA-AD-5900-01 9 125014158 125014158 C A RBM18 Missense_Mutation p.G70C 0.09 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 9 125673735 125673735 G A ZBTB6 Missense_Mutation p.S206F 0.06 tolerated(0.09) probably_damaging(0.996) TCGA-AD-5900-01 9 125865437 125865437 G A RABGAP1 Missense_Mutation p.R1052Q 0.25 deleterious(0) probably_damaging(0.968) TCGA-AD-5900-01 9 125887899 125887899 C T STRBP Missense_Mutation p.V666I 0.28 tolerated_low_confidence(0.23) benign(0.036) TCGA-AD-5900-01 9 126176674 126176674 A - DENND1A Intron 0.35 TCGA-AD-5900-01 9 12694214 12694214 G A TYRP1 Missense_Mutation p.R73Q 0.31 tolerated(0.24) benign(0.298) TCGA-AD-5900-01 9 127231518 127231518 G A GPR144 Missense_Mutation p.V776M 0.20 deleterious(0) probably_damaging(0.963) TCGA-AD-5900-01 9 127651770 127651770 G A GOLGA1 Missense_Mutation p.R515W 0.25 deleterious(0.01) benign(0.339) TCGA-AD-5900-01 9 129856164 129856164 C T ANGPTL2 Missense_Mutation p.D287N 0.25 tolerated(0.47) benign(0.102) TCGA-AD-5900-01 9 130106596 130106596 C T GARNL3 Missense_Mutation p.A445V 0.27 tolerated(0.48) benign(0.439) TCGA-AD-5900-01 9 130152958 130152958 C T GARNL3 Missense_Mutation p.P928S 0.32 tolerated_low_confidence(0.71) benign(0.001) TCGA-AD-5900-01 9 130501188 130501188 C T SH2D3C Missense_Mutation p.R807Q 0.22 tolerated(0.38) benign(0.002) TCGA-AD-5900-01 9 130931780 130931780 G A CIZ1 Nonsense_Mutation p.R684* 0.29 TCGA-AD-5900-01 9 131012623 131012623 C T DNM1 Missense_Mutation p.P769L 0.33 tolerated(0.13) benign(0.001) TCGA-AD-5900-01 9 13115251 13115251 C T MPDZ Intron 0.24 TCGA-AD-5900-01 9 131262483 131262483 T A ODF2 Nonsense_Mutation p.Y813* 0.15 TCGA-AD-5900-01 9 131348235 131348236 CT - SPTAN1 Frame_Shift_Del p.S924Cfs*2 0.29 TCGA-AD-5900-01 9 131394910 131394910 G A SPTAN1 Missense_Mutation p.R2358H 0.12 deleterious(0) benign(0.042) TCGA-AD-5900-01 9 131469642 131469642 C A PKN3 Missense_Mutation p.P265T 0.40 tolerated(0.22) benign(0.008) TCGA-AD-5900-01 9 13158037 13158037 G A MPDZ Silent p.S1144S 0.23 TCGA-AD-5900-01 9 131702665 131702665 G A PHYHD1 Silent p.T151T 0.30 TCGA-AD-5900-01 9 131904742 131904742 G A PPP2R4 Missense_Mutation p.A269T 0.24 deleterious(0.01) possibly_damaging(0.597) TCGA-AD-5900-01 9 133493188 133493188 G A FUBP3 Missense_Mutation p.R191Q 0.28 tolerated(0.11) possibly_damaging(0.863) TCGA-AD-5900-01 9 133506076 133506076 C - FUBP3 Frame_Shift_Del p.P395Lfs*27 0.19 TCGA-AD-5900-01 9 133738308 133738308 G A ABL1 Silent p.E255E 0.34 TCGA-AD-5900-01 9 133768901 133768901 T C QRFP Missense_Mutation p.S109G 0.16 tolerated(0.36) benign(0.008) TCGA-AD-5900-01 9 134501617 134501617 T G RAPGEF1 Missense_Mutation p.Q466P 0.32 tolerated_low_confidence(0.1) benign(0.002) TCGA-AD-5900-01 9 135797261 135797261 A - TSC1 Frame_Shift_Del p.L203Cfs*7 0.23 TCGA-AD-5900-01 9 135979168 135979168 A G RALGDS Missense_Mutation p.V575A 0.33 deleterious(0.01) unknown(0) TCGA-AD-5900-01 9 136218167 136218167 T C RPL7A Silent p.R249R 0.29 TCGA-AD-5900-01 9 136320455 136320455 C A ADAMTS13 Missense_Mutation p.L1100I 0.31 tolerated(0.14) benign(0.219) TCGA-AD-5900-01 9 136507565 136507565 C T DBH Silent p.F241F 0.26 TCGA-AD-5900-01 9 136522371 136522371 G A DBH Intron 0.13 TCGA-AD-5900-01 9 136918533 136918534 GG A BRD3 Frame_Shift_Del p.P24Rfs*24 0.09 TCGA-AD-5900-01 9 137623482 137623482 G A COL5A1 Silent p.P435P 0.23 TCGA-AD-5900-01 9 138378661 138378661 C - PPP1R26 Frame_Shift_Del p.S771Vfs*10 0.22 TCGA-AD-5900-01 9 138742056 138742056 C T CAMSAP1 Silent p.A324A 0.07 TCGA-AD-5900-01 9 138903707 138903707 G A NACC2 Silent p.A473A 0.14 TCGA-AD-5900-01 9 139110589 139110589 G A QSOX2 Missense_Mutation p.A341V 0.29 tolerated(0.08) benign(0.058) TCGA-AD-5900-01 9 139256582 139256582 G A DNLZ Missense_Mutation p.A140V 0.30 tolerated(0.28) benign(0.005) TCGA-AD-5900-01 9 139279204 139279204 T C SNAPC4 Missense_Mutation p.Q463R 0.29 deleterious(0.04) benign(0.438) TCGA-AD-5900-01 9 139282925 139282925 C T SNAPC4 Missense_Mutation p.R365H 0.45 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 9 139326316 139326316 C T INPP5E Silent p.A503A 0.24 TCGA-AD-5900-01 9 139369211 139369211 C T SEC16A Missense_Mutation p.G953R 0.28 deleterious(0.02) benign(0.001) TCGA-AD-5900-01 9 139391507 139391507 G T NOTCH1 Silent p.S2228S 0.30 TCGA-AD-5900-01 9 139571564 139571564 C T AGPAT2 Missense_Mutation p.R114H 0.30 deleterious(0.02) benign(0.33) TCGA-AD-5900-01 9 139839779 139839779 C - C8G Frame_Shift_Del p.P4Lfs*7 0.31 TCGA-AD-5900-01 9 139911463 139911463 G A ABCA2 Silent p.D889D 0.40 TCGA-AD-5900-01 9 139925312 139925312 G A FUT7 Silent p.S293S 0.21 TCGA-AD-5900-01 9 139973014 139973016 CTT - UAP1L1 In_Frame_Del p.F187del 0.28 TCGA-AD-5900-01 9 140051322 140051322 C T GRIN1 Silent p.L288L 0.30 TCGA-AD-5900-01 9 140175265 140175265 C - TOR4A 3'UTR 0.19 TCGA-AD-5900-01 9 140329506 140329506 C T ENTPD8 Missense_Mutation p.G450R 0.26 deleterious(0) benign(0.301) TCGA-AD-5900-01 9 140343871 140343871 A G NSMF Missense_Mutation p.L523P 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-AD-5900-01 9 140509080 140509080 G A ARRDC1 Missense_Mutation p.A289T 0.36 tolerated(0.29) benign(0.003) TCGA-AD-5900-01 9 140510374 140510374 G - C9orf37 Frame_Shift_Del p.P93Lfs*115 0.38 TCGA-AD-5900-01 9 140732961 140732961 C - EHMT1 3'Flank 0.29 TCGA-AD-5900-01 9 19049769 19049769 C T RRAGA Missense_Mutation p.R38C 0.24 deleterious(0) benign(0.195) TCGA-AD-5900-01 9 2028984 2028984 T C SMARCA2 Intron 0.33 TCGA-AD-5900-01 9 20346449 20346449 T G MLLT3 Missense_Mutation p.T567P 0.24 deleterious(0.01) benign(0.368) TCGA-AD-5900-01 9 26905369 26905369 C T PLAA 3'UTR 0.33 TCGA-AD-5900-01 9 27157958 27157958 T G TEK Missense_Mutation p.F61C 0.28 tolerated(0.17) probably_damaging(0.918) TCGA-AD-5900-01 9 27566799 27566799 C T C9orf72 Missense_Mutation p.R107H 0.30 tolerated(0.06) possibly_damaging(0.584) TCGA-AD-5900-01 9 33675682 33675682 T - PTENP1 RNA 0.22 TCGA-AD-5900-01 9 34098471 34098473 CAT - DCAF12 In_Frame_Del p.D215del 0.25 TCGA-AD-5900-01 9 34521749 34521749 C T ENHO 5'UTR 0.20 TCGA-AD-5900-01 9 35045689 35045689 A G C9orf131 Silent p.A1021A 0.26 TCGA-AD-5900-01 9 35560473 35560473 A G RUSC2 Missense_Mutation p.Q1279R 0.22 tolerated(0.17) probably_damaging(0.978) TCGA-AD-5900-01 9 35679959 35679959 G A CA9 Missense_Mutation p.A392T 0.28 tolerated(0.55) benign(0.013) TCGA-AD-5900-01 9 35841573 35841574 - G TMEM8B 5'UTR 0.18 TCGA-AD-5900-01 9 35842684 35842684 C T TMEM8B Silent p.G83G 0.23 TCGA-AD-5900-01 9 37731074 37731074 G A FRMPD1 Missense_Mutation p.V278M 0.30 deleterious(0) possibly_damaging(0.906) TCGA-AD-5900-01 9 38595914 38595914 G C ANKRD18A Missense_Mutation p.Q475E 0.08 tolerated(0.06) benign(0.217) TCGA-AD-5900-01 9 3932361 3932361 T - GLIS3 Frame_Shift_Del p.K661Sfs*145 0.23 TCGA-AD-5900-01 9 43815943 43815943 A G CNTNAP3B Missense_Mutation p.T233A 0.11 deleterious(0.01) benign(0.274) TCGA-AD-5900-01 9 6460623 6460623 G A UHRF2 Missense_Mutation p.R232Q 0.29 deleterious(0) probably_damaging(0.99) TCGA-AD-5900-01 9 71623432 71623432 C T PIP5K1B 3'UTR 0.31 TCGA-AD-5900-01 9 71628730 71628730 C A PRKACG Missense_Mutation p.K93N 0.28 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 9 72893514 72893514 C T SMC5 Silent p.N217N 0.24 TCGA-AD-5900-01 9 74312990 74312990 C A TMEM2 Missense_Mutation p.A1170S 0.05 deleterious(0) possibly_damaging(0.893) TCGA-AD-5900-01 9 75775256 75775256 G A ANXA1 Silent p.A116A 0.28 TCGA-AD-5900-01 9 77343224 77343224 C - TRPM6 Frame_Shift_Del p.E1956Kfs*25 0.27 TCGA-AD-5900-01 9 77436693 77436693 A G TRPM6 Missense_Mutation p.L301P 0.20 tolerated(0.1) possibly_damaging(0.812) TCGA-AD-5900-01 9 77703533 77703533 G A OSTF1 5'UTR 0.22 TCGA-AD-5900-01 9 7798476 7798476 A G TMEM261 3'UTR 0.17 TCGA-AD-5900-01 9 79324557 79324557 G A PRUNE2 Missense_Mutation p.A878V 0.25 tolerated(0.36) benign(0.001) TCGA-AD-5900-01 9 80412517 80412517 G A GNAQ Missense_Mutation p.T175M 0.10 deleterious(0) probably_damaging(0.981) TCGA-AD-5900-01 9 84603896 84603896 G A SPATA31D1 Missense_Mutation p.E55K 0.24 tolerated(0.65) benign(0.014) TCGA-AD-5900-01 9 84607520 84607520 T C SPATA31D1 Missense_Mutation p.L712S 0.26 deleterious(0) possibly_damaging(0.826) TCGA-AD-5900-01 9 88633285 88633285 C T NAA35 Missense_Mutation p.P630L 0.20 deleterious(0) possibly_damaging(0.754) TCGA-AD-5900-01 9 90296415 90296415 A - DAPK1 Frame_Shift_Del p.T701Pfs*4 0.19 TCGA-AD-5900-01 9 91652986 91652986 G T SHC3 Silent p.T526T 0.24 TCGA-AD-5900-01 9 92003658 92003658 C T SEMA4D Missense_Mutation p.E334K 0.22 deleterious(0.05) benign(0.029) TCGA-AD-5900-01 9 95179387 95179387 T C OMD Missense_Mutation p.N152D 0.31 tolerated(0.34) benign(0.009) TCGA-AD-5900-01 9 95179835 95179835 A C OMD Silent p.G2G 0.12 TCGA-AD-5900-01 9 96051190 96051190 C - WNK2 Frame_Shift_Del p.S1424Pfs*5 0.35 TCGA-AD-5900-01 9 96051509 96051509 C T WNK2 Silent p.P1528P 0.20 TCGA-AD-5900-01 9 97177455 97177455 C T HIATL1 Nonsense_Mutation p.R42* 0.29 TCGA-AD-5900-01 9 977211 977211 G A DMRT3 Silent p.A70A 0.23 TCGA-AD-5900-01 X 10058861 10058861 C T WWC3 Missense_Mutation p.A143V 0.49 deleterious(0) probably_damaging(0.988) TCGA-AD-5900-01 X 100911769 100911769 G A ARMCX2 Missense_Mutation p.P269L 0.61 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AD-5900-01 X 102864747 102864747 C T TCEAL3 3'UTR 0.07 TCGA-AD-5900-01 X 105879793 105879793 C T CXorf57 Nonsense_Mutation p.Q442* 0.51 TCGA-AD-5900-01 X 107464523 107464523 C T COL4A6 Missense_Mutation p.G77R 0.54 unknown(0) TCGA-AD-5900-01 X 11316252 11316252 C T AMELX Silent p.D44D 0.55 TCGA-AD-5900-01 X 114426055 114426055 G A RBMXL3 Missense_Mutation p.R684H 0.50 tolerated_low_confidence(0.25) benign(0.072) TCGA-AD-5900-01 X 118678354 118678354 T - CXorf56 Frame_Shift_Del p.T129Rfs*14 0.38 TCGA-AD-5900-01 X 118968745 118968748 TCTC - UPF3B 3'UTR 0.70 TCGA-AD-5900-01 X 119070616 119070616 T A NKAP Missense_Mutation p.E166V 0.11 deleterious(0) possibly_damaging(0.889) TCGA-AD-5900-01 X 119077214 119077214 C T NKAP Missense_Mutation p.D119N 0.12 deleterious(0.02) possibly_damaging(0.823) TCGA-AD-5900-01 X 123019514 123019514 T C XIAP Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AD-5900-01 X 123164862 123164862 G A STAG2 Missense_Mutation p.G59R 0.06 tolerated(0.46) benign(0.158) TCGA-AD-5900-01 X 129058787 129058787 G T UTP14A Missense_Mutation p.E455D 0.10 tolerated(0.09) benign(0.098) TCGA-AD-5900-01 X 12937961 12937961 G A TLR8 Missense_Mutation p.V268M 0.49 tolerated(0.06) benign(0.432) TCGA-AD-5900-01 X 135055810 135055810 G A MMGT1 Silent p.L9L 0.66 TCGA-AD-5900-01 X 13587943 13587944 - G EGFL6 5'UTR 0.55 TCGA-AD-5900-01 X 1497560 1497560 C T IL3RA Nonsense_Mutation p.Q295* 0.28 TCGA-AD-5900-01 X 150348421 150348421 C T GPR50 Silent p.I122I 0.54 TCGA-AD-5900-01 X 150348664 150348664 C T GPR50 Silent p.I203I 0.83 TCGA-AD-5900-01 X 1505541 1505541 C - SLC25A6 Frame_Shift_Del p.G284Afs*14 0.25 TCGA-AD-5900-01 X 150789417 150789417 A - PASD1 Frame_Shift_Del p.K76Nfs*3 0.08 TCGA-AD-5900-01 X 151935063 151935063 G T MAGEA3 3'UTR 0.54 TCGA-AD-5900-01 X 152100302 152100302 C T ZNF185 Missense_Mutation p.P334L 0.34 tolerated(0.17) benign(0.03) TCGA-AD-5900-01 X 152721027 152721027 C T HAUS7 Silent p.T311T 0.14 TCGA-AD-5900-01 X 152823696 152823696 C T ATP2B3 Nonsense_Mutation p.Q854* 0.57 TCGA-AD-5900-01 X 153037338 153037338 C A PLXNB3 Missense_Mutation p.P869H 0.50 deleterious(0) probably_damaging(0.999) TCGA-AD-5900-01 X 153042691 153042691 G - PLXNB3 Frame_Shift_Del p.V1678Cfs*7 0.41 TCGA-AD-5900-01 X 153069983 153069983 G - PDZD4 Frame_Shift_Del p.R379Gfs*28 0.35 TCGA-AD-5900-01 X 153663636 153663636 C T ATP6AP1 Missense_Mutation p.R330C 0.47 deleterious(0) probably_damaging(0.912) TCGA-AD-5900-01 X 153688564 153688565 - G PLXNA3 Frame_Shift_Ins p.A17Gfs*39 0.57 TCGA-AD-5900-01 X 153695019 153695019 G T PLXNA3 Missense_Mutation p.S997I 0.13 tolerated(0.16) possibly_damaging(0.83) TCGA-AD-5900-01 X 15782835 15782835 C A CA5B Missense_Mutation p.L93I 0.08 tolerated(0.07) possibly_damaging(0.778) TCGA-AD-5900-01 X 16887317 16887317 C T RBBP7 Missense_Mutation p.V59I 0.54 tolerated(0.64) benign(0.001) TCGA-AD-5900-01 X 18936849 18936849 G A PHKA2 Missense_Mutation p.T696M 0.56 deleterious(0.04) benign(0.432) TCGA-AD-5900-01 X 19568110 19568110 C T SH3KBP1 Silent p.P492P 0.65 TCGA-AD-5900-01 X 21673949 21673949 G A KLHL34 3'UTR 0.58 TCGA-AD-5900-01 X 27998387 27998387 A G DCAF8L1 Silent p.H355H 0.54 TCGA-AD-5900-01 X 30260302 30260302 G A MAGEB4 Missense_Mutation p.R17Q 0.12 tolerated(1) benign(0.003) TCGA-AD-5900-01 X 38226586 38226586 T C OTC Silent p.R40R 0.12 TCGA-AD-5900-01 X 38540477 38540477 C T TSPAN7 Missense_Mutation p.T206I 0.50 tolerated(0.2) benign(0.05) TCGA-AD-5900-01 X 40514248 40514248 G A MED14 Missense_Mutation p.A1346V 0.52 deleterious(0) possibly_damaging(0.487) TCGA-AD-5900-01 X 44120479 44120479 A G EFHC2 Missense_Mutation p.Y150H 0.54 tolerated(0.53) benign(0.006) TCGA-AD-5900-01 X 48418638 48418638 C - TBC1D25 Frame_Shift_Del p.S450Afs*22 0.50 TCGA-AD-5900-01 X 48649689 48649689 C T GATA1 Missense_Mutation p.A58V 0.45 deleterious_low_confidence(0.02) benign(0.015) TCGA-AD-5900-01 X 49957544 49957544 G - AKAP4 Frame_Shift_Del p.P607Lfs*25 0.35 TCGA-AD-5900-01 X 50377314 50377314 G A SHROOM4 Missense_Mutation p.R587C 0.27 deleterious(0) probably_damaging(1) TCGA-AD-5900-01 X 54578770 54578770 G A GNL3L Silent p.L409L 0.09 TCGA-AD-5900-01 X 57619832 57619832 G A ZXDB Missense_Mutation p.E451K 0.50 deleterious(0) probably_damaging(0.964) TCGA-AD-5900-01 X 57934441 57934441 T C ZXDA 3'UTR 0.55 TCGA-AD-5900-01 X 6968238 6968238 C T HDHD1 3'UTR 0.50 TCGA-AD-5900-01 X 70836828 70836828 G - CXCR3 Frame_Shift_Del p.P212Rfs*4 0.54 TCGA-AD-5900-01 X 72673466 72673466 C T CDX4 Silent p.L206L 0.50 TCGA-AD-5900-01 X 73964004 73964004 C A KIAA2022 Missense_Mutation p.G130C 0.09 deleterious(0) probably_damaging(0.937) TCGA-AD-5900-01 X 77913562 77913562 G T ZCCHC5 Missense_Mutation p.A119E 0.55 tolerated(0.44) benign(0.009) TCGA-AD-5900-01 X 82764244 82764244 C A POU3F4 Silent p.A304A 0.53 TCGA-AD-5900-01 X 83362031 83362031 C A RPS6KA6 Missense_Mutation p.A377S 0.14 deleterious(0.03) benign(0.11) TCGA-AD-5900-01 X 90690694 90690694 C T PABPC5 Missense_Mutation p.P40S 0.42 tolerated(0.34) benign(0.135) TCGA-AD-5900-01 X 92927641 92927641 C A NAP1L3 Missense_Mutation p.K221N 0.10 tolerated_low_confidence(0.17) possibly_damaging(0.728) TCGA-AD-5900-01 X 9693637 9693637 C T GPR143 3'UTR 0.32 TCGA-AD-5900-01 Y 16835135 16835135 G A NLGN4Y Missense_Mutation p.R204H 0.51 deleterious(0) probably_damaging(0.988) TCGA-AD-6548-01 10 115806508 115806508 T A ADRB1 3'UTR 0.28 TCGA-AD-6548-01 10 116417809 116417809 C T ABLIM1 Missense_Mutation p.A51T 0.30 tolerated_low_confidence(0.12) benign(0.005) TCGA-AD-6548-01 10 117486790 117486790 C A ATRNL1 Missense_Mutation p.S1276R 0.22 deleterious(0) possibly_damaging(0.823) TCGA-AD-6548-01 10 29581474 29581474 G A LYZL1 Missense_Mutation p.G102S 0.37 tolerated(0.36) possibly_damaging(0.856) TCGA-AD-6548-01 10 43597850 43597850 G A RET Missense_Mutation p.R133H 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.579) TCGA-AD-6548-01 10 85992355 85992355 G T LRIT1 Missense_Mutation p.S400R 0.32 tolerated(0.48) benign(0.002) TCGA-AD-6548-01 10 99327783 99327783 C T UBTD1 Silent p.F61F 0.26 TCGA-AD-6548-01 11 119058324 119058324 G A PDZD3 Missense_Mutation p.R191Q 0.27 deleterious(0.04) benign(0.263) TCGA-AD-6548-01 11 121000387 121000387 C T TECTA Missense_Mutation p.S803L 0.09 tolerated(0.22) benign(0.003) TCGA-AD-6548-01 11 126396494 126396494 G A KIRREL3 Silent p.Y74Y 0.15 TCGA-AD-6548-01 11 133805604 133805604 C T IGSF9B Missense_Mutation p.R292Q 0.29 tolerated(0.24) benign(0.104) TCGA-AD-6548-01 11 18339331 18339331 G C HPS5 Silent p.L25L 0.22 TCGA-AD-6548-01 11 280822 280822 G A NLRP6 Missense_Mutation p.R363Q 0.23 tolerated(0.63) benign(0.005) TCGA-AD-6548-01 11 55563656 55563656 G A OR5D14 Missense_Mutation p.E209K 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-AD-6548-01 11 66436522 66436522 A G RBM4B Missense_Mutation p.L218P 0.10 deleterious(0.05) possibly_damaging(0.553) TCGA-AD-6548-01 11 92257974 92257974 T C FAT3 Missense_Mutation p.V1156A 0.46 benign(0.004) TCGA-AD-6548-01 11 95825242 95825242 C T MAML2 Silent p.Q651Q 0.31 TCGA-AD-6548-01 12 104391311 104391311 C A GLT8D2 Silent p.L135L 0.16 TCGA-AD-6548-01 12 124829399 124829399 G A NCOR2 Silent p.P1486P 0.36 TCGA-AD-6548-01 12 130846146 130846146 G A PIWIL1 Missense_Mutation p.R657H 0.34 deleterious(0) probably_damaging(0.995) TCGA-AD-6548-01 12 133358982 133358982 G A GOLGA3 Missense_Mutation p.T1122M 0.26 tolerated(0.19) benign(0.26) TCGA-AD-6548-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.21 deleterious(0.04) possibly_damaging(0.506) TCGA-AD-6548-01 12 49231139 49231139 G A DDX23 Missense_Mutation p.T264M 0.27 tolerated(0.15) benign(0.011) TCGA-AD-6548-01 12 58166630 58166630 C A METTL21B Silent p.T41T 0.24 TCGA-AD-6548-01 12 75670027 75670027 C A CAPS2 Missense_Mutation p.G557V 0.18 deleterious(0) probably_damaging(0.995) TCGA-AD-6548-01 12 80762088 80762088 C T OTOGL Missense_Mutation p.A2196V 0.29 tolerated(0.1) benign(0.012) TCGA-AD-6548-01 12 81719600 81719600 G T PPFIA2 Silent p.G866G 0.22 TCGA-AD-6548-01 12 91552186 91552186 T G DCN Missense_Mutation p.K142T 0.22 tolerated(1) benign(0.006) TCGA-AD-6548-01 13 36909178 36909178 G A SPG20 Missense_Mutation p.R264C 0.19 deleterious(0) possibly_damaging(0.899) TCGA-AD-6548-01 13 49281222 49281222 C T CYSLTR2 Missense_Mutation p.T90M 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-AD-6548-01 13 52034990 52034990 C T RPS4XP16 RNA 0.40 TCGA-AD-6548-01 13 58240848 58240848 G T PCDH17 Missense_Mutation p.G893V 0.31 deleterious(0.04) probably_damaging(0.933) TCGA-AD-6548-01 13 99498191 99498192 GA - DOCK9 Frame_Shift_Del p.L1372Hfs*3 0.28 TCGA-AD-6548-01 14 100192533 100192533 G A CYP46A1 Silent p.R424R 0.21 TCGA-AD-6548-01 14 104639448 104639448 T C KIF26A Missense_Mutation p.S519P 0.12 deleterious(0) probably_damaging(0.998) TCGA-AD-6548-01 14 105395197 105395197 C T PLD4 Silent p.S132S 0.47 TCGA-AD-6548-01 14 21681240 21681241 - G HNRNPC Frame_Shift_Ins p.P148Sfs*29 0.21 TCGA-AD-6548-01 14 21992069 21992069 T C SALL2 Missense_Mutation p.K598R 0.09 deleterious(0.03) probably_damaging(0.991) TCGA-AD-6548-01 14 25043007 25043007 C T CTSG Missense_Mutation p.G202R 0.40 deleterious(0.02) probably_damaging(1) TCGA-AD-6548-01 14 70125344 70125344 C T KIAA0247 Missense_Mutation p.S12L 0.13 deleterious_low_confidence(0.01) benign(0.031) TCGA-AD-6548-01 14 77880451 77880451 G C NOXRED1 Missense_Mutation p.Q59E 0.15 tolerated(1) benign(0.002) TCGA-AD-6548-01 14 94088193 94088193 C T UNC79 Silent p.I1361I 0.24 TCGA-AD-6548-01 15 26107960 26107960 G A ATP10A Missense_Mutation p.A95V 0.18 tolerated(1) benign(0.131) TCGA-AD-6548-01 15 28273200 28273200 C T OCA2 Missense_Mutation p.R111Q 0.24 tolerated_low_confidence(0.77) benign(0.001) TCGA-AD-6548-01 15 70979908 70979908 C T UACA Silent p.A191A 0.27 TCGA-AD-6548-01 15 91420416 91420416 C T FURIN Missense_Mutation p.R185W 0.25 deleterious(0) probably_damaging(0.998) TCGA-AD-6548-01 16 2026222 2026222 T C TBL3 Missense_Mutation p.V400A 0.08 tolerated(0.06) benign(0.257) TCGA-AD-6548-01 16 20471449 20471449 C T ACSM2A Nonsense_Mutation p.R5* 0.34 TCGA-AD-6548-01 16 29107504 29107504 G A RRN3P2 RNA 0.23 TCGA-AD-6548-01 16 4790543 4790543 G A C16orf71 Silent p.P222P 0.36 TCGA-AD-6548-01 16 55860117 55860117 A G CES1 Silent p.C117C 0.11 TCGA-AD-6548-01 16 70301577 70301577 T C AARS Missense_Mutation p.S403G 0.08 tolerated(0.25) benign(0) TCGA-AD-6548-01 16 70502786 70502786 C T FUK Missense_Mutation p.A233V 0.28 deleterious(0) probably_damaging(0.992) TCGA-AD-6548-01 16 705435 705435 G A WDR90 Missense_Mutation p.R562Q 0.33 tolerated(0.68) benign(0) TCGA-AD-6548-01 16 88788432 88788432 C T PIEZO1 Silent p.A1666A 0.45 TCGA-AD-6548-01 17 12013714 12013714 T C MAP2K4 Missense_Mutation p.L219S 0.28 deleterious(0) probably_damaging(1) TCGA-AD-6548-01 17 39887791 39887792 AA - HAP1 Frame_Shift_Del p.L341Rfs*3 0.59 TCGA-AD-6548-01 17 70120199 70120199 C T SOX9 Nonsense_Mutation p.Q401* 0.52 TCGA-AD-6548-01 17 72875597 72875597 C T FADS6 Silent p.S281S 0.21 TCGA-AD-6548-01 17 7578202 7578202 A C TP53 Missense_Mutation p.V216G 0.41 deleterious(0) probably_damaging(1) TCGA-AD-6548-01 17 76567099 76567099 G A DNAH17 Silent p.N283N 0.62 TCGA-AD-6548-01 17 80071435 80071435 C T CCDC57 Missense_Mutation p.G282R 0.29 deleterious_low_confidence(0) unknown(0) TCGA-AD-6548-01 18 14542978 14542978 C A POTEC Missense_Mutation p.M56I 0.11 deleterious_low_confidence(0.01) benign(0) TCGA-AD-6548-01 18 44085875 44085875 G A LOXHD1 Missense_Mutation p.T824M 0.24 tolerated(0.3) benign(0.421) TCGA-AD-6548-01 19 10439684 10439684 C T RAVER1 Silent p.T147T 0.25 TCGA-AD-6548-01 19 22156897 22156897 G T ZNF208 Nonsense_Mutation p.Y313* 0.31 TCGA-AD-6548-01 19 31039960 31039960 T A ZNF536 Missense_Mutation p.V1145D 0.24 tolerated_low_confidence(0.63) benign(0.013) TCGA-AD-6548-01 19 3179472 3179472 C T S1PR4 Missense_Mutation p.R228C 0.24 tolerated(0.19) benign(0.011) TCGA-AD-6548-01 19 39227907 39227907 C T CAPN12 Silent p.R417R 0.36 TCGA-AD-6548-01 19 44721973 44721973 C T ZNF227 Nonsense_Mutation p.Q10* 0.15 TCGA-AD-6548-01 19 48183811 48183811 G T GLTSCR1 Missense_Mutation p.A462S 0.42 unknown(0) TCGA-AD-6548-01 19 48197757 48197757 C T GLTSCR1 Missense_Mutation p.S890F 0.22 unknown(0) TCGA-AD-6548-01 19 56012520 56012520 C T SSC5D Missense_Mutation p.R913W 0.29 possibly_damaging(0.859) TCGA-AD-6548-01 19 57134545 57134545 A T ZNF71 3'UTR 0.31 TCGA-AD-6548-01 19 8564270 8564270 C T PRAM1 Missense_Mutation p.R141K 0.09 tolerated(0.48) benign(0.014) TCGA-AD-6548-01 19 9087603 9087603 T C MUC16 Silent p.K1404K 0.21 TCGA-AD-6548-01 1 1114630 1114630 G A TTLL10 Missense_Mutation p.R12Q 0.29 tolerated_low_confidence(0.12) benign(0.036) TCGA-AD-6548-01 1 120054160 120054160 A G HSD3B1 Silent p.E60E 0.25 TCGA-AD-6548-01 1 158436045 158436045 G A OR10K1 Missense_Mutation p.V232I 0.28 deleterious(0.02) benign(0.16) TCGA-AD-6548-01 1 159901386 159901386 C T IGSF9 Missense_Mutation p.R457Q 0.21 tolerated(0.32) benign(0.006) TCGA-AD-6548-01 1 176679292 176679292 A T PAPPA2 Missense_Mutation p.T1211S 0.14 deleterious(0.04) possibly_damaging(0.865) TCGA-AD-6548-01 1 196797279 196797279 G C CFHR1 Missense_Mutation p.E170D 0.22 tolerated(0.29) unknown(0) TCGA-AD-6548-01 1 201017777 201017777 G A CACNA1S Silent p.D1458D 0.38 TCGA-AD-6548-01 1 201183351 201183351 G T IGFN1 Missense_Mutation p.Q2925H 0.27 possibly_damaging(0.655) TCGA-AD-6548-01 1 20827887 20827887 G A MUL1 Nonsense_Mutation p.Q119* 0.22 TCGA-AD-6548-01 1 218520124 218520124 C T TGFB2 Silent p.L27L 0.37 TCGA-AD-6548-01 1 32120951 32120951 C T COL16A1 Silent p.S1418S 0.28 TCGA-AD-6548-01 1 32497155 32497155 C A KHDRBS1 Missense_Mutation p.Q180K 0.26 tolerated(0.76) possibly_damaging(0.82) TCGA-AD-6548-01 1 34554715 34554715 G A CSMD2 Silent p.Y49Y 0.37 TCGA-AD-6548-01 1 44169933 44169933 T A KDM4A Silent p.I1029I 0.18 TCGA-AD-6548-01 20 16354951 16354951 A C KIF16B Missense_Mutation p.L1101V 0.13 tolerated_low_confidence(0.5) benign(0.02) TCGA-AD-6548-01 20 30584486 30584486 C T XKR7 Silent p.S322S 0.10 TCGA-AD-6548-01 20 3065289 3065289 A G AVP Missense_Mutation p.L11P 0.08 deleterious(0) possibly_damaging(0.885) TCGA-AD-6548-01 20 34828386 34828386 A G AAR2 Missense_Mutation p.K199R 0.09 tolerated(0.14) benign(0.021) TCGA-AD-6548-01 20 43378842 43378842 C T KCNK15 Missense_Mutation p.P119L 0.29 deleterious(0) probably_damaging(0.911) TCGA-AD-6548-01 20 44869642 44869642 G A CDH22 Silent p.H170H 0.36 TCGA-AD-6548-01 22 17669270 17669270 T A CECR1 Missense_Mutation p.D347V 0.33 tolerated(0.29) benign(0.009) TCGA-AD-6548-01 22 18003289 18003289 C G CECR2 Missense_Mutation p.A326G 0.18 deleterious(0.01) possibly_damaging(0.742) TCGA-AD-6548-01 2 112940424 112940424 G A FBLN7 Missense_Mutation p.A243T 0.39 tolerated(0.61) benign(0.003) TCGA-AD-6548-01 2 170060595 170060595 G A LRP2 Silent p.L2634L 0.33 TCGA-AD-6548-01 2 170761797 170761797 T C UBR3 Missense_Mutation p.F547L 0.30 tolerated(0.22) possibly_damaging(0.777) TCGA-AD-6548-01 2 179584533 179584533 C T TTN Missense_Mutation p.E7896K 0.39 TCGA-AD-6548-01 2 219508535 219508535 G T ZNF142 Missense_Mutation p.P902T 0.17 tolerated(0.06) possibly_damaging(0.641) TCGA-AD-6548-01 2 220412406 220412406 C T TMEM198 Silent p.S115S 0.29 TCGA-AD-6548-01 2 223086093 223086093 T C PAX3 Missense_Mutation p.N269S 0.36 deleterious(0.02) possibly_damaging(0.764) TCGA-AD-6548-01 2 27303629 27303629 G A EMILIN1 Missense_Mutation p.R107H 0.22 probably_damaging(0.987) TCGA-AD-6548-01 2 44079574 44079574 G A ABCG8 Missense_Mutation p.G215R 0.11 deleterious(0) probably_damaging(1) TCGA-AD-6548-01 2 50765666 50765666 G T NRXN1 Missense_Mutation p.A663D 0.08 tolerated(0.29) benign(0.241) TCGA-AD-6548-01 2 71159918 71159918 C T VAX2 Missense_Mutation p.R153C 0.32 deleterious(0) probably_damaging(0.998) TCGA-AD-6548-01 2 71192102 71192102 C T ATP6V1B1 Missense_Mutation p.R465C 0.39 deleterious(0) probably_damaging(1) TCGA-AD-6548-01 2 73490860 73490860 C T FBXO41 Missense_Mutation p.R674H 0.39 deleterious(0) probably_damaging(0.994) TCGA-AD-6548-01 3 130282083 130282084 - CCA COL6A6 In_Frame_Ins p.H80dup 0.41 TCGA-AD-6548-01 3 134880932 134880932 G A EPHB1 Missense_Mutation p.G499S 0.25 tolerated(0.14) benign(0.077) TCGA-AD-6548-01 3 148858103 148858103 G A HPS3 Missense_Mutation p.R177H 0.38 tolerated(0.1) probably_damaging(0.984) TCGA-AD-6548-01 3 155200740 155200744 GAGCA - PLCH1 Frame_Shift_Del p.L1032Pfs*29 0.36 TCGA-AD-6548-01 3 197746209 197746209 G A LMLN Missense_Mutation p.V477M 0.26 deleterious(0.01) possibly_damaging(0.468) TCGA-AD-6548-01 3 44948656 44948656 C T TGM4 Missense_Mutation p.R431W 0.26 deleterious(0) probably_damaging(0.998) TCGA-AD-6548-01 3 47061326 47061326 G A SETD2 Missense_Mutation p.S2452L 0.19 deleterious(0) probably_damaging(0.99) TCGA-AD-6548-01 3 7348250 7348250 G T GRM7 Missense_Mutation p.S315I 0.20 deleterious(0) benign(0.238) TCGA-AD-6548-01 4 126336543 126336543 T G FAT4 Missense_Mutation p.V2142G 0.31 probably_damaging(0.93) TCGA-AD-6548-01 4 129783438 129783438 A G JADE1 Intron 0.18 TCGA-AD-6548-01 4 138442116 138442116 T A PCDH18 3'UTR 0.35 TCGA-AD-6548-01 4 153251895 153251895 T A FBXW7 Nonsense_Mutation p.K371* 0.20 TCGA-AD-6548-01 4 184241127 184241127 A C CLDN22 Missense_Mutation p.I82S 0.20 deleterious(0) probably_damaging(0.949) TCGA-AD-6548-01 4 5857976 5857976 G A CRMP1 Silent p.H238H 0.37 TCGA-AD-6548-01 4 71275274 71275274 C T PROL1 Nonsense_Mutation p.R77* 0.31 TCGA-AD-6548-01 4 8220031 8220031 C T SH3TC1 Silent p.D291D 0.25 TCGA-AD-6548-01 5 112175162 112175162 C T APC Nonsense_Mutation p.Q1291* 0.50 TCGA-AD-6548-01 5 133473786 133473789 CTCT - TCF7 Frame_Shift_Del p.L162Tfs*36 0.30 TCGA-AD-6548-01 5 13841844 13841844 G A DNAH5 Missense_Mutation p.T1814I 0.23 possibly_damaging(0.507) TCGA-AD-6548-01 5 140812210 140812210 G A PCDHGA12 Silent p.T628T 0.28 TCGA-AD-6548-01 5 16091106 16091106 T C MARCH11 Missense_Mutation p.T260A 0.27 tolerated(0.13) benign(0.082) TCGA-AD-6548-01 5 175387010 175387010 C T THOC3 Missense_Mutation p.G340R 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-AD-6548-01 5 177310793 177310793 G A RP11-423H2.1 RNA 0.32 TCGA-AD-6548-01 5 177683871 177683871 G A COL23A1 Missense_Mutation p.P278L 0.73 tolerated(0.45) benign(0.029) TCGA-AD-6548-01 5 19483515 19483515 T C CDH18 Missense_Mutation p.R593G 0.20 tolerated(0.2) benign(0.022) TCGA-AD-6548-01 5 311488 311488 G A PDCD6 Missense_Mutation p.D150N 0.16 tolerated(0.22) probably_damaging(0.938) TCGA-AD-6548-01 5 78384336 78384336 A G BHMT2 Missense_Mutation p.E344G 0.14 deleterious(0.02) benign(0.025) TCGA-AD-6548-01 6 107955144 107955144 G A SOBP Missense_Mutation p.V366I 0.18 tolerated(0.46) benign(0.009) TCGA-AD-6548-01 6 130764105 130764105 T A TMEM200A 3'UTR 0.25 TCGA-AD-6548-01 6 18149254 18149254 G A TPMT Silent p.N35N 0.25 TCGA-AD-6548-01 6 33043830 33043830 G T HLA-DPB1 Silent p.L4L 0.21 TCGA-AD-6548-01 6 66042212 66042212 C G EYS Intron 0.24 TCGA-AD-6548-01 6 70744174 70744174 G T COL19A1 Missense_Mutation p.G373V 0.35 deleterious(0) unknown(0) TCGA-AD-6548-01 7 123143030 123143030 C T IQUB Missense_Mutation p.E279K 0.17 tolerated(0.08) benign(0.009) TCGA-AD-6548-01 7 139790915 139790915 G A KDM7A Silent p.G935G 0.20 TCGA-AD-6548-01 7 142626635 142626635 A C TRPV5 Silent p.V125V 0.25 TCGA-AD-6548-01 7 143807373 143807373 G A OR2A2 Missense_Mutation p.R233H 0.32 deleterious(0.04) possibly_damaging(0.519) TCGA-AD-6548-01 7 30054363 30054363 G A FKBP14 Silent p.H208H 0.36 TCGA-AD-6548-01 7 36910057 36910057 C T ELMO1 Missense_Mutation p.V616M 0.65 tolerated(0.13) benign(0.07) TCGA-AD-6548-01 7 48318088 48318088 T A ABCA13 Missense_Mutation p.S2433T 0.21 benign(0.092) TCGA-AD-6548-01 7 83592560 83592560 A G SEMA3A Silent p.Y607Y 0.22 TCGA-AD-6548-01 7 87483582 87483582 A G SLC25A40 Silent p.C67C 0.08 TCGA-AD-6548-01 7 91755716 91755716 G C CYP51A1 Silent p.L207L 0.27 TCGA-AD-6548-01 7 96651537 96651537 C T DLX5 Missense_Mutation p.R167H 0.21 deleterious(0) possibly_damaging(0.703) TCGA-AD-6548-01 8 38117562 38117562 T C DDHD2 Missense_Mutation p.S687P 0.08 deleterious(0) probably_damaging(1) TCGA-AD-6548-01 8 59488596 59488596 A T SDCBP Silent p.G126G 0.13 TCGA-AD-6548-01 8 81411959 81411959 T G ZBTB10 Silent p.P401P 0.40 TCGA-AD-6548-01 9 135771689 135771689 G A TSC1 Missense_Mutation p.P1143L 0.27 tolerated(0.51) benign(0.002) TCGA-AD-6548-01 9 137653777 137653777 C G COL5A1 Missense_Mutation p.P648A 0.33 probably_damaging(0.971) TCGA-AD-6548-01 9 21239877 21239877 A C IFNA14 Missense_Mutation p.C20G 0.31 tolerated(0.46) benign(0.033) TCGA-AD-6548-01 9 32633639 32633639 G A TAF1L Missense_Mutation p.L647F 0.22 deleterious(0.03) probably_damaging(0.978) TCGA-AD-6548-01 9 88203272 88203272 T C AGTPBP1 Silent p.R908R 0.19 TCGA-AD-6548-01 X 106038929 106038929 G T RNF128 Nonsense_Mutation p.E425* 0.19 TCGA-AD-6548-01 X 106844477 106844477 C T FRMPD3 Nonsense_Mutation p.R1103* 0.11 TCGA-AD-6548-01 X 11130257 11130257 C G HCCS Missense_Mutation p.P26R 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6548-01 X 118109343 118109343 C T LONRF3 Silent p.S200S 0.24 TCGA-AD-6548-01 X 138708859 138708859 C A MCF2 Silent p.V225V 0.36 TCGA-AD-6548-01 X 151093270 151093271 TC - MAGEA4 3'UTR 0.26 TCGA-AD-6548-01 X 152225595 152225595 C T PNMA3 Silent p.N61N 0.23 TCGA-AD-6548-01 X 36254941 36254941 T C CXorf30 5'UTR 0.15 TCGA-AD-6548-01 X 54956131 54956131 G A TRO Missense_Mutation p.A992T 0.21 tolerated(0.09) benign(0.313) TCGA-AD-6548-01 X 72347749 72347749 G A NAP1L6 5'UTR 0.08 TCGA-AD-6548-01 X 78216129 78216129 G A P2RY10 Missense_Mutation p.A38T 0.18 tolerated(0.17) benign(0.05) TCGA-AD-6548-01 X 83128479 83128479 G T CYLC1 Missense_Mutation p.D255Y 0.08 tolerated(0.21) probably_damaging(0.934) TCGA-AD-6548-01 X 88008568 88008568 G A CPXCR1 Silent p.R51R 0.32 TCGA-AD-6548-01 X 90693238 90693238 A G PABPC5 3'UTR 0.35 TCGA-AD-6548-01 X 96192329 96192329 A G DIAPH2 Missense_Mutation p.N396S 0.16 deleterious(0.05) unknown(0) TCGA-AD-6888-01 10 105218008 105218008 G A CALHM1 Silent p.G167G 0.33 TCGA-AD-6888-01 10 127437957 127437957 T C EDRF1 Intron 0.30 TCGA-AD-6888-01 10 436310 436310 C A DIP2C Missense_Mutation p.W463L 0.18 deleterious(0) probably_damaging(0.998) TCGA-AD-6888-01 10 7218057 7218057 G A SFMBT2 Missense_Mutation p.R627C 0.23 deleterious(0) probably_damaging(0.93) TCGA-AD-6888-01 10 77167122 77167122 C T RP11-399K21.14 5'Flank 0.41 TCGA-AD-6888-01 10 78711874 78711874 G A KCNMA1 Missense_Mutation p.T785I 0.49 deleterious(0.05) benign(0.001) TCGA-AD-6888-01 11 2356953 2356953 C T CD81-AS1 Intron 0.14 TCGA-AD-6888-01 11 532707 532707 T C HRAS Missense_Mutation p.K167E 0.13 tolerated(0.12) benign(0.001) TCGA-AD-6888-01 11 60885800 60885800 G A CD5 Missense_Mutation p.R83Q 0.29 tolerated(1) benign(0.001) TCGA-AD-6888-01 11 6415770 6415770 G A SMPD1 Missense_Mutation p.R610H 0.13 tolerated(0.1) benign(0.013) TCGA-AD-6888-01 11 66461717 66461717 C T SPTBN2 Missense_Mutation p.V1466M 0.15 deleterious(0) probably_damaging(0.999) TCGA-AD-6888-01 11 68772956 68772956 G A MRGPRF Silent p.Y274Y 0.27 TCGA-AD-6888-01 12 111924599 111924599 T C ATXN2 Missense_Mutation p.N917S 0.22 probably_damaging(0.91) TCGA-AD-6888-01 12 117271670 117271670 A C RNFT2 Missense_Mutation p.K319T 0.25 deleterious(0) probably_damaging(0.986) TCGA-AD-6888-01 12 120125805 120125805 G A CIT 3'UTR 0.15 TCGA-AD-6888-01 12 132530374 132530374 C T EP400 Nonsense_Mutation p.R2377* 0.21 TCGA-AD-6888-01 12 49912897 49912899 AAG - SPATS2 In_Frame_Del p.K315del 0.29 TCGA-AD-6888-01 12 5021247 5021247 G A KCNA1 Missense_Mutation p.E235K 0.11 deleterious(0) probably_damaging(0.997) TCGA-AD-6888-01 12 52799885 52799885 G A KRT82 Silent p.N59N 0.22 TCGA-AD-6888-01 13 101736134 101736134 C T NALCN Missense_Mutation p.D1171N 0.07 deleterious(0) probably_damaging(0.933) TCGA-AD-6888-01 13 36700037 36700037 G A DCLK1 Missense_Mutation p.R80W 0.28 deleterious(0) unknown(0) TCGA-AD-6888-01 13 39266578 39266578 C T FREM2 Silent p.I1699I 0.17 TCGA-AD-6888-01 13 58298910 58298910 G A PCDH17 Missense_Mutation p.E988K 0.14 deleterious(0.04) possibly_damaging(0.664) TCGA-AD-6888-01 14 23896795 23896795 C T MYH7 Silent p.A629A 0.37 TCGA-AD-6888-01 14 75991472 75991472 C T BATF Missense_Mutation p.R37C 0.58 deleterious(0) probably_damaging(0.999) TCGA-AD-6888-01 14 86091470 86091470 C A FLRT2 3'UTR 0.11 TCGA-AD-6888-01 15 100589136 100589136 G A ADAMTS17 Silent p.N839N 0.22 TCGA-AD-6888-01 15 22956344 22956344 G A CYFIP1 Intron 0.34 TCGA-AD-6888-01 15 41191534 41191534 A G VPS18 Missense_Mutation p.E173G 0.30 deleterious(0) possibly_damaging(0.641) TCGA-AD-6888-01 15 43017381 43017381 C G CDAN1 Missense_Mutation p.E1173D 0.24 tolerated(0.16) benign(0.275) TCGA-AD-6888-01 15 51993436 51993436 C A SCG3 Missense_Mutation p.P401H 0.20 deleterious_low_confidence(0.03) benign(0.014) TCGA-AD-6888-01 15 52517303 52517303 C T MYO5C Missense_Mutation p.E1112K 0.50 tolerated(0.41) benign(0.003) TCGA-AD-6888-01 15 59209190 59209191 - T SLTM Frame_Shift_Ins p.H87Tfs*2 0.15 TCGA-AD-6888-01 16 20043470 20043470 G A GPR139 Missense_Mutation p.R217C 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-AD-6888-01 16 24801465 24801465 G T TNRC6A Missense_Mutation p.G501V 0.22 deleterious(0) possibly_damaging(0.807) TCGA-AD-6888-01 16 31050953 31050953 A G STX4 Missense_Mutation p.N265S 0.09 tolerated(0.12) benign(0.006) TCGA-AD-6888-01 16 56448186 56448186 G C AMFR Missense_Mutation p.P109R 0.33 deleterious(0.05) benign(0.01) TCGA-AD-6888-01 17 26603606 26603606 T C AC061975.8 5'Flank 0.38 TCGA-AD-6888-01 17 26668433 26668433 G A TNFAIP1 Missense_Mutation p.V157M 0.36 deleterious(0.03) possibly_damaging(0.72) TCGA-AD-6888-01 17 33269890 33269890 C T CCT6B Missense_Mutation p.R217H 0.30 deleterious(0.01) possibly_damaging(0.705) TCGA-AD-6888-01 17 33771752 33771752 C A SLFN13 Silent p.V316V 0.43 TCGA-AD-6888-01 17 37881000 37881000 G T ERBB2 Missense_Mutation p.V777L 0.90 deleterious(0.05) benign(0.006) TCGA-AD-6888-01 17 39597060 39597060 G T KRT38 Silent p.A38A 0.39 TCGA-AD-6888-01 17 40840485 40840485 C T CNTNAP1 Nonsense_Mutation p.R438* 0.38 TCGA-AD-6888-01 17 42426884 42426884 G A GRN Missense_Mutation p.V77I 0.18 tolerated(0.42) benign(0.021) TCGA-AD-6888-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.62 deleterious(0) probably_damaging(0.996) TCGA-AD-6888-01 18 22056880 22056880 C G HRH4 Missense_Mutation p.A176G 0.27 deleterious(0) possibly_damaging(0.568) TCGA-AD-6888-01 18 29340800 29340800 G A SLC25A52 5'UTR 0.17 TCGA-AD-6888-01 18 346586 346586 T G COLEC12 Missense_Mutation p.I346L 0.60 deleterious(0.05) possibly_damaging(0.456) TCGA-AD-6888-01 18 76756928 76756928 C T SALL3 Missense_Mutation p.A1170V 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6888-01 19 31768425 31768425 C T TSHZ3 Silent p.A758A 0.06 TCGA-AD-6888-01 19 34833066 34833074 CCGCAGCAG - KIAA0355 In_Frame_Del p.Q744_P746del 0.45 TCGA-AD-6888-01 19 36206026 36206026 C T ZBTB32 Silent p.H166H 0.53 TCGA-AD-6888-01 19 38089290 38089290 T G ZNF540 5'UTR 0.25 TCGA-AD-6888-01 19 40366177 40366177 G A FCGBP Missense_Mutation p.P4686L 0.25 probably_damaging(0.971) TCGA-AD-6888-01 19 42410923 42410923 G A ARHGEF1 Silent p.Q923Q 0.25 TCGA-AD-6888-01 19 42563599 42563599 G A GRIK5 Missense_Mutation p.R197W 0.35 deleterious(0.05) benign(0.004) TCGA-AD-6888-01 19 43372351 43372351 C T PSG1 Missense_Mutation p.R382H 0.47 tolerated(0.58) benign(0.006) TCGA-AD-6888-01 19 7535040 7535040 G A ARHGEF18 Silent p.P1126P 0.18 TCGA-AD-6888-01 1 1019613 1019613 C T C1orf159 Intron 0.62 TCGA-AD-6888-01 1 11190804 11190804 C T MTOR Missense_Mutation p.E1799K 0.40 tolerated(0.08) probably_damaging(0.996) TCGA-AD-6888-01 1 114680217 114680217 C T SYT6 Missense_Mutation p.R239H 0.08 deleterious(0.05) probably_damaging(0.973) TCGA-AD-6888-01 1 1169045 1169045 A C B3GALT6 3'UTR 0.22 TCGA-AD-6888-01 1 12090137 12090137 C T MIIP Missense_Mutation p.R300W 0.20 deleterious(0) probably_damaging(0.998) TCGA-AD-6888-01 1 152328180 152328180 G T FLG2 Silent p.G694G 0.15 TCGA-AD-6888-01 1 153431416 153431416 T C S100A7 Missense_Mutation p.D25G 0.27 tolerated(0.2) benign(0.026) TCGA-AD-6888-01 1 153431426 153431426 T C S100A7 Missense_Mutation p.R22G 0.20 tolerated(1) benign(0) TCGA-AD-6888-01 1 160121943 160121943 G A ATP1A4 Missense_Mutation p.R38H 0.26 tolerated(0.12) benign(0.023) TCGA-AD-6888-01 1 215802154 215802168 ACCAGTCCACTGTTG - USH2A Splice_Site p.X5169_splice 0.15 TCGA-AD-6888-01 1 215901723 215901723 G A USH2A Silent p.R3905R 0.35 TCGA-AD-6888-01 1 228495837 228495837 G A OBSCN Silent p.G5121G 0.36 TCGA-AD-6888-01 1 235884120 235884120 A C LYST Nonsense_Mutation p.L3134* 0.36 TCGA-AD-6888-01 1 237167445 237167445 C T MT1HL1 3'UTR 0.32 TCGA-AD-6888-01 1 248402643 248402643 C T OR2M4 Missense_Mutation p.P138L 0.17 tolerated(0.66) benign(0.002) TCGA-AD-6888-01 1 27690450 27690450 G A MAP3K6 Silent p.P274P 0.36 TCGA-AD-6888-01 1 31349839 31349839 C T SDC3 Missense_Mutation p.V144M 0.45 tolerated(0.19) possibly_damaging(0.488) TCGA-AD-6888-01 1 32946542 32946543 - C ZBTB8B Frame_Shift_Ins p.Y348Sfs*25 0.17 TCGA-AD-6888-01 1 39352113 39352121 TTCCTTTTT - RHBDL2 3'UTR 0.31 TCGA-AD-6888-01 1 77627056 77627056 A G PIGK Missense_Mutation p.M246T 0.43 deleterious(0.01) benign(0.281) TCGA-AD-6888-01 20 25274922 25274922 A G PYGB Missense_Mutation p.H769R 0.50 tolerated(0.2) benign(0.279) TCGA-AD-6888-01 20 34064300 34064301 GA - CEP250 Frame_Shift_Del p.S582Ffs*2 0.12 TCGA-AD-6888-01 20 42788956 42788956 C T JPH2 Silent p.S157S 0.61 TCGA-AD-6888-01 20 4883156 4883156 G A SLC23A2 Nonsense_Mutation p.R86* 0.25 TCGA-AD-6888-01 20 62195238 62195238 G A HELZ2 Missense_Mutation p.A1646V 0.66 tolerated(0.6) benign(0.001) TCGA-AD-6888-01 21 33948995 33948995 A T TCP10L 3'UTR 0.50 TCGA-AD-6888-01 21 44485564 44485564 G A CBS Missense_Mutation p.P200L 0.21 deleterious(0) possibly_damaging(0.781) TCGA-AD-6888-01 22 19119970 19119970 T C TSSK2 Missense_Mutation p.V353A 0.16 tolerated_low_confidence(0.53) benign(0) TCGA-AD-6888-01 22 25315859 25315859 C T SGSM1 Missense_Mutation p.A1086V 0.28 tolerated(0.16) benign(0.156) TCGA-AD-6888-01 22 43089032 43089032 C G A4GALT Missense_Mutation p.S309T 0.58 deleterious(0.02) benign(0.049) TCGA-AD-6888-01 2 107459975 107459975 G A ST6GAL2 Silent p.P153P 0.20 TCGA-AD-6888-01 2 141571322 141571322 C A LRP1B Nonsense_Mutation p.G1755* 0.13 TCGA-AD-6888-01 2 152222684 152222684 G A TNFAIP6 Missense_Mutation p.R116H 0.37 deleterious(0.03) probably_damaging(1) TCGA-AD-6888-01 2 175311411 175311411 A C GPR155 Nonsense_Mutation p.Y647* 0.21 TCGA-AD-6888-01 2 176973648 176973648 G A HOXD11 Silent p.R265R 0.46 TCGA-AD-6888-01 2 179530112 179530112 C T TTN Missense_Mutation p.R12012H 0.18 TCGA-AD-6888-01 2 179581822 179581822 C A TTN Nonsense_Mutation p.E8547* 0.21 TCGA-AD-6888-01 2 207513527 207513527 C T DYTN 3'Flank 0.39 TCGA-AD-6888-01 2 210588354 210588354 A C MAP2 Intron 0.18 TCGA-AD-6888-01 2 233408404 233408404 C T CHRNG Missense_Mutation p.R344C 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-AD-6888-01 2 26409154 26409154 C T GAREML Missense_Mutation p.R509C 0.13 deleterious(0.04) possibly_damaging(0.61) TCGA-AD-6888-01 2 31483636 31483636 G A EHD3 Missense_Mutation p.G255S 0.35 tolerated(0.06) probably_damaging(0.927) TCGA-AD-6888-01 2 5838928 5838928 A G SOX11 3'UTR 0.18 TCGA-AD-6888-01 2 71909725 71909725 G A DYSF Missense_Mutation p.R2080Q 0.15 deleterious(0.05) probably_damaging(0.982) TCGA-AD-6888-01 3 129275463 129275463 C T PLXND1 Silent p.P1886P 0.35 TCGA-AD-6888-01 3 130463989 130463989 T C PIK3R4 Missense_Mutation p.D25G 0.09 tolerated(0.1) possibly_damaging(0.697) TCGA-AD-6888-01 3 35763243 35763243 C T ARPP21 Missense_Mutation p.T347M 0.35 deleterious(0) probably_damaging(0.981) TCGA-AD-6888-01 3 51126687 51126687 G A DOCK3 Missense_Mutation p.R188Q 0.20 tolerated(0.18) probably_damaging(0.984) TCGA-AD-6888-01 4 156775284 156775284 A C ASIC5 Missense_Mutation p.L177R 0.17 deleterious(0) probably_damaging(0.992) TCGA-AD-6888-01 4 175899305 175899305 G T ADAM29 3'UTR 0.30 TCGA-AD-6888-01 4 186066150 186066150 G A SLC25A4 Missense_Mutation p.G115D 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-AD-6888-01 4 186347123 186347123 G T UFSP2 5'UTR 0.17 TCGA-AD-6888-01 4 42627645 42627645 T - ATP8A1 Frame_Shift_Del p.I84Lfs*26 0.16 TCGA-AD-6888-01 4 77177384 77177384 G A FAM47E Missense_Mutation p.R43Q 0.39 tolerated(0.15) benign(0.038) TCGA-AD-6888-01 4 87022325 87022325 T C MAPK10 Missense_Mutation p.K204E 0.41 deleterious(0) probably_damaging(1) TCGA-AD-6888-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.49 TCGA-AD-6888-01 5 112175303 112175303 C T APC Nonsense_Mutation p.Q1338* 0.22 TCGA-AD-6888-01 5 135561006 135561006 T A TRPC7 Missense_Mutation p.N767Y 0.25 tolerated(0.06) benign(0.025) TCGA-AD-6888-01 5 136328269 136328269 G A SPOCK1 Missense_Mutation p.R204W 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-AD-6888-01 5 140250541 140250541 G A PCDHA11 Missense_Mutation p.R618H 0.18 tolerated_low_confidence(0.09) benign(0.035) TCGA-AD-6888-01 5 140475252 140475252 C T PCDHB2 Missense_Mutation p.T293M 0.12 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-AD-6888-01 5 140746164 140746164 A T PCDHGA5 Missense_Mutation p.E756V 0.50 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-AD-6888-01 5 140755384 140755384 G A PCDHGA6 Silent p.A578A 0.36 TCGA-AD-6888-01 5 140800990 140800990 C T PCDHGA11 Missense_Mutation p.R66C 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AD-6888-01 5 140963080 140963080 G A DIAPH1 Missense_Mutation p.R169C 0.33 unknown(0) TCGA-AD-6888-01 5 156381626 156381626 G A TIMD4 Missense_Mutation p.A67V 0.23 deleterious(0.01) benign(0.081) TCGA-AD-6888-01 5 34929912 34929912 G A DNAJC21 5'UTR 0.18 TCGA-AD-6888-01 5 37244531 37244531 C A C5orf42 Missense_Mutation p.L172F 0.26 deleterious(0) probably_damaging(0.955) TCGA-AD-6888-01 5 89990220 89990220 C T GPR98 Silent p.N2549N 0.22 TCGA-AD-6888-01 6 136582155 136582155 G A BCLAF1 3'UTR 0.12 TCGA-AD-6888-01 6 152644680 152644680 C T SYNE1 Missense_Mutation p.A5284T 0.69 benign(0) TCGA-AD-6888-01 6 166576020 166576020 C T T Silent p.T273T 0.47 TCGA-AD-6888-01 6 29054029 29054029 C A OR2B3 3'UTR 0.20 TCGA-AD-6888-01 6 3111145 3111145 C T RIPK1 Missense_Mutation p.T562M 0.20 tolerated(0.31) benign(0.001) TCGA-AD-6888-01 6 35466230 35466230 A T TULP1 Nonsense_Mutation p.Y501* 0.19 TCGA-AD-6888-01 6 54805844 54805844 G A FAM83B Missense_Mutation p.R692Q 0.21 tolerated(0.06) benign(0.004) TCGA-AD-6888-01 6 90387403 90387403 C T MDN1 Missense_Mutation p.R4142H 0.31 probably_damaging(0.992) TCGA-AD-6888-01 7 150733031 150733031 C T ABCB8 Silent p.F330F 0.12 TCGA-AD-6888-01 7 3678685 3678685 G A SDK1 Missense_Mutation p.V170M 0.10 tolerated(0.1) benign(0.223) TCGA-AD-6888-01 7 4794118 4794118 C T FOXK1 Missense_Mutation p.R259C 0.18 deleterious(0) probably_damaging(0.972) TCGA-AD-6888-01 7 57187418 57187418 G T ZNF479 3'UTR 0.12 TCGA-AD-6888-01 7 76126706 76126706 C T DTX2 Silent p.R354R 0.06 TCGA-AD-6888-01 7 84628858 84628858 G T SEMA3D Missense_Mutation p.N744K 0.24 tolerated(1) benign(0.021) TCGA-AD-6888-01 8 145006599 145006599 G A PLEC Missense_Mutation p.T786I 0.16 unknown(0) TCGA-AD-6888-01 8 1616768 1616768 G A DLGAP2 Missense_Mutation p.R615Q 0.40 tolerated(0.59) benign(0.012) TCGA-AD-6888-01 8 21770012 21770012 G A DOK2 Missense_Mutation p.R25C 0.44 deleterious(0) probably_damaging(0.927) TCGA-AD-6888-01 8 38139035 38139035 G A WHSC1L1 Nonsense_Mutation p.R1190* 0.22 TCGA-AD-6888-01 8 86569827 86569827 G A REXO1L1P 3'UTR 0.23 TCGA-AD-6888-01 9 127781229 127781229 G A SCAI Missense_Mutation p.A260V 0.22 tolerated(0.05) probably_damaging(0.927) TCGA-AD-6888-01 9 131038507 131038507 G T SWI5 Missense_Mutation p.R28M 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.831) TCGA-AD-6888-01 9 84603886 84603886 G A SPATA31D1 Silent p.S51S 0.25 TCGA-AD-6888-01 X 37893174 37893174 C T SYTL5 Missense_Mutation p.S11L 0.19 deleterious(0) probably_damaging(0.971) TCGA-AD-6888-01 X 55479048 55479048 C T MAGEH1 Missense_Mutation p.R81W 0.35 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-AD-6889-01 10 100186987 100186988 GG - HPS1 Frame_Shift_Del p.P324Hfs*128 0.49 TCGA-AD-6889-01 10 100190986 100190986 G A HPS1 Silent p.H190H 0.45 TCGA-AD-6889-01 10 101090663 101090663 C T CNNM1 Missense_Mutation p.H507Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 10 101370935 101370935 G - SLC25A28 Frame_Shift_Del p.Q256Rfs*19 0.35 TCGA-AD-6889-01 10 101611407 101611407 A G ABCC2 3'UTR 0.40 TCGA-AD-6889-01 10 102049785 102049785 G A PKD2L1 Missense_Mutation p.P746L 0.27 tolerated_low_confidence(0.08) benign(0.002) TCGA-AD-6889-01 10 102783347 102783347 C A PDZD7 Missense_Mutation p.G130W 0.21 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 10 102987299 102987299 C A LBX1 Nonsense_Mutation p.E192* 0.36 TCGA-AD-6889-01 10 104129067 104129067 C T GBF1 Missense_Mutation p.R1024W 0.53 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 10 104465211 104465211 T C ARL3 Silent p.A13A 0.43 TCGA-AD-6889-01 10 104679763 104679763 C - CNNM2 Frame_Shift_Del p.L511* 0.27 TCGA-AD-6889-01 10 105037912 105037912 A T INA Missense_Mutation p.Y315F 0.15 tolerated(0.11) benign(0.137) TCGA-AD-6889-01 10 105344928 105344928 C T NEURL1 Missense_Mutation p.P429S 0.59 tolerated(0.16) probably_damaging(1) TCGA-AD-6889-01 10 105778008 105778009 GA - SLK Frame_Shift_Del p.E992Vfs*4 0.40 TCGA-AD-6889-01 10 105921760 105921760 C A WDR96 Nonsense_Mutation p.G1125* 0.45 TCGA-AD-6889-01 10 105923980 105923980 G A WDR96 Missense_Mutation p.R1040C 0.46 deleterious(0) probably_damaging(0.992) TCGA-AD-6889-01 10 106074472 106074472 G A ITPRIP Silent p.A446A 0.47 TCGA-AD-6889-01 10 106075669 106075669 C T ITPRIP Silent p.K47K 0.42 TCGA-AD-6889-01 10 106118231 106118231 G A CCDC147 Missense_Mutation p.A48T 0.56 tolerated(0.59) benign(0.003) TCGA-AD-6889-01 10 108459131 108459131 G A SORCS1 Silent p.T418T 0.34 TCGA-AD-6889-01 10 112839126 112839126 C T ADRA2A Missense_Mutation p.R458W 0.44 deleterious(0) probably_damaging(0.975) TCGA-AD-6889-01 10 115355414 115355414 G A NRAP Nonsense_Mutation p.R1502* 0.56 TCGA-AD-6889-01 10 115610254 115610254 C A DCLRE1A Missense_Mutation p.G204C 0.40 deleterious(0.01) possibly_damaging(0.885) TCGA-AD-6889-01 10 116059064 116059064 G A AFAP1L2 Missense_Mutation p.R690W 0.34 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 10 116075496 116075496 G A AFAP1L2 Silent p.Y145Y 0.32 TCGA-AD-6889-01 10 117884807 117884807 A G GFRA1 Missense_Mutation p.V232A 0.12 tolerated(0.36) benign(0.004) TCGA-AD-6889-01 10 118228781 118228781 A G PNLIPRP3 Missense_Mutation p.N338D 0.44 tolerated(0.62) benign(0.005) TCGA-AD-6889-01 10 119042781 119042782 AC - PDZD8 Frame_Shift_Del p.*1155A 0.37 TCGA-AD-6889-01 10 119768425 119768426 TC - RAB11FIP2 3'UTR 0.33 TCGA-AD-6889-01 10 120353679 120353679 G - PRLHR Frame_Shift_Del p.H360Mfs*5 0.37 TCGA-AD-6889-01 10 124598699 124598699 G A CUZD1 Silent p.D94D 0.54 TCGA-AD-6889-01 10 126691539 126691539 G A CTBP2 Silent p.A656A 0.29 TCGA-AD-6889-01 10 128798493 128798493 C T DOCK1 Missense_Mutation p.R303C 0.41 deleterious(0) possibly_damaging(0.689) TCGA-AD-6889-01 10 129676471 129676471 C T CLRN3 Missense_Mutation p.R208Q 0.41 tolerated(0.45) benign(0.01) TCGA-AD-6889-01 10 132896619 132896619 T C TCERG1L Silent p.L518L 0.08 TCGA-AD-6889-01 10 134174960 134174960 G T LRRC27 Splice_Site p.X391_splice 0.38 TCGA-AD-6889-01 10 134692983 134692983 C A TTC40 Missense_Mutation p.G1318C 0.45 tolerated(0.18) possibly_damaging(0.796) TCGA-AD-6889-01 10 134699445 134699445 G A TTC40 Missense_Mutation p.A1108V 0.25 deleterious(0) benign(0.031) TCGA-AD-6889-01 10 135015189 135015189 C T KNDC1 Silent p.G1058G 0.53 TCGA-AD-6889-01 10 135038427 135038427 C T KNDC1 3'UTR 0.13 TCGA-AD-6889-01 10 135126422 135126422 G A ZNF511 3'UTR 0.35 TCGA-AD-6889-01 10 135180481 135180481 C A ECHS1 Missense_Mutation p.Q177H 0.20 deleterious(0.02) possibly_damaging(0.457) TCGA-AD-6889-01 10 15014534 15014534 G A MEIG1 Missense_Mutation p.G54E 0.36 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 10 18087578 18087579 - C TMEM236 3'UTR 0.51 TCGA-AD-6889-01 10 18242443 18242443 G A SLC39A12 Missense_Mutation p.G80R 0.07 tolerated(0.2) benign(0.005) TCGA-AD-6889-01 10 18629714 18629714 C T CACNB2 Intron 0.25 TCGA-AD-6889-01 10 19896717 19896717 T G MALRD1 Missense_Mutation p.C1365G 0.38 deleterious(0) benign(0.271) TCGA-AD-6889-01 10 23482680 23482680 G A PTF1A Missense_Mutation p.G278R 0.43 deleterious(0) unknown(0) TCGA-AD-6889-01 10 24820775 24820775 G A KIAA1217 Silent p.S1033S 0.32 TCGA-AD-6889-01 10 25284576 25284576 T - ENKUR Frame_Shift_Del p.K149Rfs*17 0.34 TCGA-AD-6889-01 10 26462732 26462732 A C MYO3A Missense_Mutation p.E1180A 0.37 deleterious(0.05) benign(0.066) TCGA-AD-6889-01 10 27352939 27352940 - T ANKRD26 Frame_Shift_Ins p.N447Kfs*5 0.26 TCGA-AD-6889-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.32 TCGA-AD-6889-01 10 3176774 3176774 G T PFKP Nonsense_Mutation p.G708* 0.35 TCGA-AD-6889-01 10 32304463 32304463 T A KIF5B Missense_Mutation p.Q962H 0.48 deleterious_low_confidence(0) benign(0.069) TCGA-AD-6889-01 10 34601219 34601219 A - PARD3 Intron 0.59 TCGA-AD-6889-01 10 35320289 35320289 C T CUL2 Missense_Mutation p.R461H 0.27 deleterious(0) probably_damaging(0.993) TCGA-AD-6889-01 10 35929957 35929957 C T FZD8 Missense_Mutation p.R134H 0.47 deleterious(0.02) unknown(0) TCGA-AD-6889-01 10 3823819 3823819 G A KLF6 Intron 0.32 TCGA-AD-6889-01 10 43016046 43016046 A T ZNF37BP RNA 0.38 TCGA-AD-6889-01 10 43285945 43285945 A G BMS1 Missense_Mutation p.T208A 0.38 deleterious(0) possibly_damaging(0.565) TCGA-AD-6889-01 10 43883060 43883060 G A HNRNPF Silent p.T91T 0.47 TCGA-AD-6889-01 10 45429139 45429139 C T TMEM72 Silent p.G88G 0.30 TCGA-AD-6889-01 10 45500123 45500123 T - ZNF22 3'UTR 0.35 TCGA-AD-6889-01 10 45799423 45799423 A G OR13A1 Missense_Mutation p.Y150H 0.46 deleterious(0) possibly_damaging(0.875) TCGA-AD-6889-01 10 48370727 48370727 G A ZNF488 Silent p.A65A 0.53 TCGA-AD-6889-01 10 48389527 48389527 A G RBP3 Missense_Mutation p.S451P 0.08 deleterious(0.04) probably_damaging(0.957) TCGA-AD-6889-01 10 48390124 48390124 C T RBP3 Missense_Mutation p.A252T 0.12 deleterious(0.02) probably_damaging(0.992) TCGA-AD-6889-01 10 48414243 48414243 T C GDF2 Missense_Mutation p.S209G 0.38 tolerated(0.12) benign(0.015) TCGA-AD-6889-01 10 49635147 49635147 C T MAPK8 Nonsense_Mutation p.Q341* 0.46 TCGA-AD-6889-01 10 50029155 50029155 G A WDFY4 Missense_Mutation p.E1920K 0.40 tolerated(0.24) benign(0.06) TCGA-AD-6889-01 10 50835685 50835685 G A CHAT Missense_Mutation p.R322H 0.39 deleterious(0.03) benign(0.012) TCGA-AD-6889-01 10 5496270 5496270 C T NET1 Silent p.L271L 0.35 TCGA-AD-6889-01 10 55568491 55568491 C T PCDH15 Silent p.S707S 0.43 TCGA-AD-6889-01 10 55582615 55582615 G A PCDH15 Missense_Mutation p.P1626L 0.41 tolerated_low_confidence(0.1) benign(0.001) TCGA-AD-6889-01 10 61832804 61832804 T - ANK3 Frame_Shift_Del p.K2612Rfs*25 0.31 TCGA-AD-6889-01 10 63944045 63944046 - T RTKN2 3'UTR 0.27 TCGA-AD-6889-01 10 64573565 64573565 G A EGR2 Missense_Mutation p.A278V 0.51 tolerated(0.27) benign(0.074) TCGA-AD-6889-01 10 71144595 71144595 A T HK1 Missense_Mutation p.Y592F 0.44 tolerated(0.23) probably_damaging(0.969) TCGA-AD-6889-01 10 71174795 71174795 G A TACR2 Missense_Mutation p.P165S 0.48 deleterious(0.03) probably_damaging(0.996) TCGA-AD-6889-01 10 71392599 71392599 G A C10orf35 Silent p.Q50Q 0.47 TCGA-AD-6889-01 10 71392765 71392765 C A C10orf35 Missense_Mutation p.L106I 0.43 tolerated(0.18) probably_damaging(0.99) TCGA-AD-6889-01 10 72015286 72015286 C T NPFFR1 Silent p.A240A 0.45 TCGA-AD-6889-01 10 72015370 72015370 C T NPFFR1 Missense_Mutation p.M212I 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-AD-6889-01 10 7205747 7205747 G A SFMBT2 Silent p.A890A 0.45 TCGA-AD-6889-01 10 73051326 73051326 C T UNC5B Missense_Mutation p.P478S 0.29 tolerated(0.19) possibly_damaging(0.725) TCGA-AD-6889-01 10 73570308 73570308 G A CDH23 Missense_Mutation p.R780H 0.43 deleterious(0.02) possibly_damaging(0.742) TCGA-AD-6889-01 10 73767342 73767342 G A CHST3 Missense_Mutation p.A185T 0.49 tolerated(0.09) probably_damaging(0.97) TCGA-AD-6889-01 10 7423898 7423898 G A SFMBT2 5'UTR 0.29 TCGA-AD-6889-01 10 75280699 75280700 CA - USP54 Frame_Shift_Del p.A817Cfs*7 0.36 TCGA-AD-6889-01 10 75412918 75412918 T C SYNPO2L Missense_Mutation p.T251A 0.41 tolerated(0.7) benign(0.001) TCGA-AD-6889-01 10 75487217 75487217 T - RP11-464F9.1 RNA 0.30 TCGA-AD-6889-01 10 75567581 75567581 A G NDST2 Missense_Mutation p.L189P 0.63 deleterious(0) possibly_damaging(0.539) TCGA-AD-6889-01 10 75612069 75612069 C T CAMK2G Missense_Mutation p.G95D 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-AD-6889-01 10 77158950 77158950 G - ZNF503 Frame_Shift_Del p.L500Sfs*37 0.44 TCGA-AD-6889-01 10 7844736 7844736 A G ATP5C1 Missense_Mutation p.K270R 0.39 tolerated(0.12) benign(0.147) TCGA-AD-6889-01 10 78646919 78646919 A G KCNMA1 3'Flank 0.42 TCGA-AD-6889-01 10 78832881 78832881 G T KCNMA1 Missense_Mutation p.L575I 0.47 deleterious(0) probably_damaging(0.947) TCGA-AD-6889-01 10 8007368 8007369 AG - TAF3 Frame_Shift_Del p.K635Rfs*6 0.43 TCGA-AD-6889-01 10 81273955 81273955 T C EIF5AL1 3'UTR 0.19 TCGA-AD-6889-01 10 81275670 81275670 A C EIF5AL1 3'UTR 0.24 TCGA-AD-6889-01 10 87484179 87484179 C T GRID1 Silent p.Q596Q 0.43 TCGA-AD-6889-01 10 90774093 90774094 - A FAS Frame_Shift_Ins p.A301Sfs*20 0.27 TCGA-AD-6889-01 10 92679968 92679968 C A ANKRD1 Silent p.L55L 0.40 TCGA-AD-6889-01 10 94821086 94821086 G A CYP26C1 Silent p.A22A 0.41 TCGA-AD-6889-01 10 95242049 95242049 A G MYOF 5'Flank 0.44 TCGA-AD-6889-01 10 95518555 95518555 G A LGI1 Missense_Mutation p.G85E 0.53 tolerated(0.11) benign(0.26) TCGA-AD-6889-01 10 95791743 95791743 G A PLCE1 Missense_Mutation p.A314T 0.40 tolerated_low_confidence(0.07) benign(0.001) TCGA-AD-6889-01 10 96970510 96970510 T C C10orf129 Missense_Mutation p.S239P 0.39 deleterious(0) possibly_damaging(0.723) TCGA-AD-6889-01 10 97111102 97111102 C T SORBS1 Missense_Mutation p.R749H 0.34 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 10 97453499 97453499 G A TCTN3 Missense_Mutation p.A53V 0.14 deleterious(0.04) benign(0.037) TCGA-AD-6889-01 10 98292805 98292805 T C TM9SF3 Intron 0.55 TCGA-AD-6889-01 10 98380135 98380135 G A PIK3AP1 Nonsense_Mutation p.R639* 0.47 TCGA-AD-6889-01 10 98816118 98816118 C T SLIT1 Missense_Mutation p.A421T 0.45 tolerated(0.05) benign(0.015) TCGA-AD-6889-01 10 99213327 99213329 CTT - ZDHHC16 In_Frame_Del p.F201del 0.42 TCGA-AD-6889-01 10 99504578 99504578 G A ZFYVE27 Missense_Mutation p.E121K 0.30 tolerated(0.07) possibly_damaging(0.502) TCGA-AD-6889-01 10 99509277 99509277 C T ZFYVE27 Missense_Mutation p.P200S 0.45 tolerated(0.1) probably_damaging(0.969) TCGA-AD-6889-01 11 1000484 1000484 C T AP2A2 Missense_Mutation p.A670V 0.43 tolerated(0.31) benign(0.002) TCGA-AD-6889-01 11 100803906 100803906 G T ARHGAP42 Missense_Mutation p.G206V 0.40 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 11 100998685 100998685 C T PGR Missense_Mutation p.A373T 0.10 tolerated(0.3) benign(0.013) TCGA-AD-6889-01 11 1017683 1017683 G T MUC6 Silent p.A1706A 0.12 TCGA-AD-6889-01 11 101833945 101833945 C T KIAA1377 Missense_Mutation p.P727S 0.08 tolerated(0.06) benign(0.046) TCGA-AD-6889-01 11 1026400 1026401 - G MUC6 Frame_Shift_Ins p.E825Rfs*6 0.33 TCGA-AD-6889-01 11 102713170 102713170 G A MMP3 Missense_Mutation p.A164V 0.12 tolerated(0.44) benign(0.111) TCGA-AD-6889-01 11 102743626 102743627 - C MMP12 RNA 0.31 TCGA-AD-6889-01 11 103339345 103339345 G T DYNC2H1 Missense_Mutation p.S4233I 0.43 benign(0.053) TCGA-AD-6889-01 11 105481680 105481680 C T GRIA4 5'UTR 0.54 TCGA-AD-6889-01 11 107501189 107501189 C T ELMOD1 Missense_Mutation p.R22C 0.44 tolerated(0.18) probably_damaging(0.998) TCGA-AD-6889-01 11 108043549 108043549 T C NPAT Missense_Mutation p.D721G 0.39 tolerated(0.68) benign(0.003) TCGA-AD-6889-01 11 108196153 108196153 T - ATM Frame_Shift_Del p.L2231Wfs*4 0.34 TCGA-AD-6889-01 11 111229512 111229512 C T POU2AF1 Splice_Site p.X49_splice 0.30 TCGA-AD-6889-01 11 111594554 111594554 C - SIK2 Frame_Shift_Del p.P829Lfs*49 0.38 TCGA-AD-6889-01 11 111746295 111746295 T C FDXACB1 Missense_Mutation p.Q409R 0.34 tolerated(0.09) benign(0.007) TCGA-AD-6889-01 11 111753213 111753213 G A C11orf1 Missense_Mutation p.R56Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 11 111941932 111941932 T - PIH1D2 Frame_Shift_Del p.N126Ifs*3 0.36 TCGA-AD-6889-01 11 113258696 113258696 C T ANKK1 Silent p.S30S 0.42 TCGA-AD-6889-01 11 114057674 114057674 C T ZBTB16 Missense_Mutation p.A456V 0.42 deleterious(0) probably_damaging(0.996) TCGA-AD-6889-01 11 117257955 117257955 C A CEP164 Silent p.L587L 0.66 TCGA-AD-6889-01 11 117321332 117321332 G - DSCAML1 Frame_Shift_Del p.P1274Lfs*7 0.38 TCGA-AD-6889-01 11 118392685 118392685 G A KMT2A Missense_Mutation p.R3906H 0.31 probably_damaging(0.999) TCGA-AD-6889-01 11 118771608 118771608 G T BCL9L Silent p.P948P 0.62 TCGA-AD-6889-01 11 118849885 118849885 C T FOXR1 Missense_Mutation p.R119W 0.36 tolerated(0.28) benign(0.004) TCGA-AD-6889-01 11 118963723 118963723 C A HMBS Missense_Mutation p.P302T 0.42 tolerated(0.15) benign(0.014) TCGA-AD-6889-01 11 119052937 119052937 A G NLRX1 Missense_Mutation p.Q830R 0.43 tolerated(0.98) benign(0.002) TCGA-AD-6889-01 11 119059851 119059851 C T PDZD3 Silent p.C475C 0.14 TCGA-AD-6889-01 11 119077221 119077221 G A CBL Missense_Mutation p.A32T 0.56 deleterious(0.05) benign(0.132) TCGA-AD-6889-01 11 119209960 119209960 C G C1QTNF5 3'UTR 0.44 TCGA-AD-6889-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.50 TCGA-AD-6889-01 11 11977548 11977548 G T USP47 Missense_Mutation p.R1230S 0.44 deleterious(0) possibly_damaging(0.855) TCGA-AD-6889-01 11 124739423 124739423 C - ROBO3 Frame_Shift_Del p.R191Afs*31 0.31 TCGA-AD-6889-01 11 124767017 124767017 G A ROBO4 Missense_Mutation p.P71S 0.22 tolerated(0.13) probably_damaging(0.992) TCGA-AD-6889-01 11 125867172 125867172 G A CDON Silent p.S764S 0.49 TCGA-AD-6889-01 11 125875841 125875841 G A CDON Missense_Mutation p.P555L 0.45 deleterious(0.04) possibly_damaging(0.877) TCGA-AD-6889-01 11 126073478 126073478 G A RPUSD4 Silent p.H323H 0.55 TCGA-AD-6889-01 11 1281905 1281905 C T MUC5B Silent p.C5672C 0.45 TCGA-AD-6889-01 11 1283397 1283397 T C MUC5B 3'UTR 0.43 TCGA-AD-6889-01 11 128782051 128782051 C T KCNJ5 Missense_Mutation p.H295Y 0.37 deleterious(0.01) benign(0.028) TCGA-AD-6889-01 11 128858019 128858019 C T ARHGAP32 Silent p.V385V 0.48 TCGA-AD-6889-01 11 130777965 130777965 G A SNX19 Missense_Mutation p.A683V 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-AD-6889-01 11 132306128 132306128 T C OPCML Silent p.L263L 0.40 TCGA-AD-6889-01 11 133790373 133790374 - G IGSF9B Frame_Shift_Ins p.T1083Hfs*72 0.49 TCGA-AD-6889-01 11 134064020 134064020 C T NCAPD3 Missense_Mutation p.C572Y 0.30 deleterious(0.04) benign(0.058) TCGA-AD-6889-01 11 134241040 134241040 C T GLB1L2 Nonsense_Mutation p.Q452* 0.40 TCGA-AD-6889-01 11 13466668 13466668 C T BTBD10 Missense_Mutation p.A2T 0.50 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-AD-6889-01 11 15096318 15096318 C T CALCB Silent p.Y18Y 0.45 TCGA-AD-6889-01 11 15197354 15197354 G A INSC Missense_Mutation p.E89K 0.45 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 11 1628838 1628838 G A KRTAP5-3 3'UTR 0.31 TCGA-AD-6889-01 11 16838673 16838673 C T PLEKHA7 Missense_Mutation p.A514T 0.59 deleterious(0.02) possibly_damaging(0.638) TCGA-AD-6889-01 11 17418505 17418505 C T ABCC8 Silent p.P1359P 0.40 TCGA-AD-6889-01 11 17655386 17655386 G A OTOG Missense_Mutation p.R2423H 0.33 benign(0.006) TCGA-AD-6889-01 11 17757900 17757900 G T KCNC1 Missense_Mutation p.E117D 0.50 tolerated(0.11) benign(0.381) TCGA-AD-6889-01 11 19077003 19077003 C A MRGPRX2 Missense_Mutation p.C316F 0.35 deleterious(0.02) benign(0.005) TCGA-AD-6889-01 11 2193005 2193005 G - TH Frame_Shift_Del p.D5Tfs*27 0.31 TCGA-AD-6889-01 11 22363206 22363206 C T SLC17A6 Silent p.I73I 0.51 TCGA-AD-6889-01 11 233361 233361 C T SIRT3 Missense_Mutation p.S152N 0.65 deleterious(0) probably_damaging(0.923) TCGA-AD-6889-01 11 2434055 2434055 G - TRPM5 Frame_Shift_Del p.Q762Rfs*35 0.33 TCGA-AD-6889-01 11 27017166 27017166 C T FIBIN 3'UTR 0.50 TCGA-AD-6889-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.29 TCGA-AD-6889-01 11 30914385 30914385 A G DCDC1 Missense_Mutation p.W1685R 0.46 tolerated(0.12) possibly_damaging(0.781) TCGA-AD-6889-01 11 33117910 33117910 T - CSTF3 Frame_Shift_Del p.K439Nfs*33 0.27 TCGA-AD-6889-01 11 33682559 33682559 C T KIAA1549L Missense_Mutation p.S1756L 0.30 deleterious(0) probably_damaging(0.923) TCGA-AD-6889-01 11 34104590 34104590 T C CAPRIN1 Splice_Site p.X322_splice 0.46 TCGA-AD-6889-01 11 36596059 36596059 T C RAG1 Missense_Mutation p.L402P 0.55 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AD-6889-01 11 3660998 3660998 C T ART5 Missense_Mutation p.E221K 0.30 deleterious(0) probably_damaging(0.983) TCGA-AD-6889-01 11 4091253 4091253 C A STIM1 Intron 0.40 TCGA-AD-6889-01 11 4091345 4091345 C A STIM1 Missense_Mutation p.R235S 0.06 deleterious(0) probably_damaging(0.993) TCGA-AD-6889-01 11 428790 428790 A G ANO9 Missense_Mutation p.Y318H 0.82 tolerated(0.56) benign(0.166) TCGA-AD-6889-01 11 44941453 44941453 C T TSPAN18 Missense_Mutation p.P173L 0.54 deleterious(0) probably_damaging(0.987) TCGA-AD-6889-01 11 45948373 45948373 C - GYLTL1B Frame_Shift_Del p.R428Gfs*30 0.41 TCGA-AD-6889-01 11 46717659 46717659 G A ARHGAP1 5'UTR 0.12 TCGA-AD-6889-01 11 46916184 46916184 C T LRP4 Missense_Mutation p.G499D 0.39 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 11 47354131 47354131 G A MYBPC3 Missense_Mutation p.R1205W 0.17 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 11 47505048 47505048 G A CELF1 Missense_Mutation p.A187V 0.40 deleterious(0) benign(0.012) TCGA-AD-6889-01 11 48286119 48286119 C A OR4X1 Missense_Mutation p.S236Y 0.42 deleterious(0.03) probably_damaging(1) TCGA-AD-6889-01 11 48347205 48347205 T C OR4C3 Missense_Mutation p.M238T 0.18 deleterious(0.01) benign(0.302) TCGA-AD-6889-01 11 49204780 49204780 G A FOLH1 Missense_Mutation p.R281C 0.08 tolerated(0.07) benign(0.179) TCGA-AD-6889-01 11 4936269 4936269 C T OR51G2 Missense_Mutation p.V209I 0.49 tolerated(0.51) benign(0.021) TCGA-AD-6889-01 11 5254224 5254224 C A HBD Silent p.V138V 0.46 TCGA-AD-6889-01 11 55065381 55065381 C T TRIM51HP RNA 0.41 TCGA-AD-6889-01 11 5528925 5528925 G T UBQLN3 Missense_Mutation p.Q622K 0.45 deleterious(0) benign(0.277) TCGA-AD-6889-01 11 55339686 55339686 T - OR4C16 Frame_Shift_Del p.L30Cfs*13 0.46 TCGA-AD-6889-01 11 55371373 55371373 G A OR4C11 Silent p.I159I 0.40 TCGA-AD-6889-01 11 56128419 56128419 G T OR8J1 Nonsense_Mutation p.G233* 0.43 TCGA-AD-6889-01 11 57147266 57147266 G - PRG3 Frame_Shift_Del p.H26Ifs*5 0.31 TCGA-AD-6889-01 11 57235087 57235087 G A RTN4RL2 Missense_Mutation p.A13T 0.41 tolerated_low_confidence(0.08) possibly_damaging(0.499) TCGA-AD-6889-01 11 57947456 57947456 C A OR9Q1 Missense_Mutation p.D180E 0.48 deleterious(0.02) probably_damaging(1) TCGA-AD-6889-01 11 58126449 58126449 T C OR5B17 Missense_Mutation p.I32V 0.43 tolerated_low_confidence(0.06) benign(0.101) TCGA-AD-6889-01 11 58170770 58170771 - C OR5B3 Frame_Shift_Ins p.V38Gfs*26 0.30 TCGA-AD-6889-01 11 59828705 59828705 G A MS4A3 Silent p.A24A 0.53 TCGA-AD-6889-01 11 60640738 60640738 C T ZP1 Missense_Mutation p.R406W 0.33 tolerated(0.12) possibly_damaging(0.851) TCGA-AD-6889-01 11 60777250 60777250 T C CD6 Missense_Mutation p.C330R 0.33 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 11 62291978 62291978 C T AHNAK Missense_Mutation p.G3304D 0.50 probably_damaging(0.969) TCGA-AD-6889-01 11 62371639 62371639 C T EML3 Missense_Mutation p.V673M 0.11 deleterious(0) benign(0.04) TCGA-AD-6889-01 11 62455707 62455707 G A LRRN4CL Missense_Mutation p.R92C 0.40 tolerated(0.06) possibly_damaging(0.877) TCGA-AD-6889-01 11 62549768 62549768 C T TAF6L Missense_Mutation p.R264W 0.53 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 11 63071594 63071594 C T SLC22A10 Missense_Mutation p.R434C 0.11 tolerated(0.06) benign(0.431) TCGA-AD-6889-01 11 6340747 6340747 G T PRKCDBP Silent p.P144P 0.37 TCGA-AD-6889-01 11 63742126 63742127 - T AP000721.4 5'UTR 0.31 TCGA-AD-6889-01 11 63884604 63884604 A G FLRT1 Missense_Mutation p.T289A 0.12 tolerated(1) benign(0.002) TCGA-AD-6889-01 11 63961667 63961667 T C STIP1 Missense_Mutation p.S76P 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6889-01 11 64011559 64011559 A C FKBP2 3'UTR 0.54 TCGA-AD-6889-01 11 64497598 64497598 C T RASGRP2 Missense_Mutation p.R494H 0.09 deleterious(0.04) benign(0.11) TCGA-AD-6889-01 11 65143979 65143979 C A SLC25A45 Nonsense_Mutation p.G256* 0.46 TCGA-AD-6889-01 11 65363227 65363227 G A KCNK7 Missense_Mutation p.P6L 0.42 deleterious(0) possibly_damaging(0.848) TCGA-AD-6889-01 11 65389824 65389824 G A PCNXL3 Missense_Mutation p.A782T 0.41 deleterious(0.04) possibly_damaging(0.869) TCGA-AD-6889-01 11 6541385 6541385 C A DNHD1 Intron 0.54 TCGA-AD-6889-01 11 65632703 65632703 C T MUS81 Nonsense_Mutation p.R472* 0.33 TCGA-AD-6889-01 11 65633542 65633542 C - MUS81 3'UTR 0.16 TCGA-AD-6889-01 11 6566657 6566657 C T DNHD1 Silent p.V1496V 0.46 TCGA-AD-6889-01 11 65687482 65687482 G A DRAP1 Missense_Mutation p.R60Q 0.38 deleterious(0) probably_damaging(0.979) TCGA-AD-6889-01 11 6592321 6592321 G A DNHD1 Missense_Mutation p.A4527T 0.64 probably_damaging(0.978) TCGA-AD-6889-01 11 66006741 66006741 A G PACS1 Missense_Mutation p.I808V 0.38 tolerated(0.6) benign(0.004) TCGA-AD-6889-01 11 66045915 66045915 C T CNIH2 5'UTR 0.45 TCGA-AD-6889-01 11 66055105 66055105 G - YIF1A Frame_Shift_Del p.R131Gfs*50 0.42 TCGA-AD-6889-01 11 66062234 66062234 G A TMEM151A Missense_Mutation p.A173T 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-AD-6889-01 11 66291306 66291306 G A BBS1 Missense_Mutation p.V355I 0.55 tolerated(0.34) benign(0.102) TCGA-AD-6889-01 11 66407427 66407427 T C RBM4 Missense_Mutation p.V82A 0.36 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 11 66436624 66436624 G A RBM4B Missense_Mutation p.A184V 0.44 tolerated(0.29) benign(0.044) TCGA-AD-6889-01 11 66620051 66620051 C A PC Missense_Mutation p.G562W 0.52 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 11 67232552 67232552 C A TMEM134 Silent p.V142V 0.57 TCGA-AD-6889-01 11 68380594 68380594 G A PPP6R3 3'UTR 0.40 TCGA-AD-6889-01 11 68571493 68571493 G T CPT1A Missense_Mutation p.P177Q 0.39 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 11 69063404 69063404 G A MYEOV Missense_Mutation p.A163T 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-AD-6889-01 11 70201770 70201770 G - PPFIA1 Frame_Shift_Del p.V781* 0.26 TCGA-AD-6889-01 11 7111516 7111516 C T RBMXL2 Missense_Mutation p.R389W 0.37 tolerated(0.06) benign(0.001) TCGA-AD-6889-01 11 71164306 71164306 C - NADSYN1 5'UTR 0.38 TCGA-AD-6889-01 11 71724791 71724791 C T NUMA1 Missense_Mutation p.R1253Q 0.28 benign(0.027) TCGA-AD-6889-01 11 73536804 73536804 G A MRPL48 Missense_Mutation p.G55D 0.50 deleterious(0.01) possibly_damaging(0.89) TCGA-AD-6889-01 11 73676057 73676057 A - DNAJB13 Frame_Shift_Del p.I159Lfs*8 0.35 TCGA-AD-6889-01 11 74022442 74022442 T C P4HA3 Intron 0.43 TCGA-AD-6889-01 11 74421929 74421929 G A CHRDL2 Missense_Mutation p.R133C 0.43 deleterious(0) probably_damaging(0.95) TCGA-AD-6889-01 11 74799812 74799812 C T OR2AT4 Missense_Mutation p.C316Y 0.43 tolerated_low_confidence(0.93) benign(0.004) TCGA-AD-6889-01 11 75113468 75113468 C A RPS3 Missense_Mutation p.L126I 0.32 tolerated(0.16) benign(0.01) TCGA-AD-6889-01 11 7586924 7586925 GA - PPFIBP2 Frame_Shift_Del p.R70Sfs*20 0.39 TCGA-AD-6889-01 11 76239346 76239346 C T C11orf30 Missense_Mutation p.A677V 0.40 deleterious(0) probably_damaging(0.939) TCGA-AD-6889-01 11 76814249 76814249 G A OMP Missense_Mutation p.A122T 0.65 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-AD-6889-01 11 76922261 76922261 C T MYO7A Missense_Mutation p.A2039V 0.31 deleterious(0) probably_damaging(0.982) TCGA-AD-6889-01 11 77386245 77386245 G A RSF1 Missense_Mutation p.P1133L 0.54 tolerated(0.15) benign(0.295) TCGA-AD-6889-01 11 78523299 78523300 TG - TENM4 Frame_Shift_Del p.H615Qfs*7 0.38 TCGA-AD-6889-01 11 8118320 8118320 C T TUB Silent p.R273R 0.50 TCGA-AD-6889-01 11 82443411 82443411 G A FAM181B 3'UTR 0.48 TCGA-AD-6889-01 11 82643976 82643976 T - C11orf82 Frame_Shift_Del p.L534Yfs*16 0.32 TCGA-AD-6889-01 11 82880627 82880627 C T PCF11 Nonsense_Mutation p.Q1084* 0.35 TCGA-AD-6889-01 11 82984690 82984691 - T CCDC90B Frame_Shift_Ins p.D199Gfs*13 0.31 TCGA-AD-6889-01 11 84028280 84028280 T - DLG2 Intron 0.30 TCGA-AD-6889-01 11 85435483 85435483 C T SYTL2 Missense_Mutation p.G673R 0.27 tolerated(0.27) benign(0.033) TCGA-AD-6889-01 11 8642705 8642705 G - TRIM66 Frame_Shift_Del p.P993Qfs*4 0.26 TCGA-AD-6889-01 11 8646536 8646536 G A TRIM66 Silent p.S703S 0.44 TCGA-AD-6889-01 11 86521900 86521900 T G PRSS23 3'UTR 0.40 TCGA-AD-6889-01 11 88242020 88242020 C T GRM5 Missense_Mutation p.A1127T 0.44 tolerated_low_confidence(0.51) benign(0.003) TCGA-AD-6889-01 11 9004896 9004896 C T NRIP3 3'UTR 0.36 TCGA-AD-6889-01 11 92616149 92616149 G A FAT3 Missense_Mutation p.R4176H 0.53 possibly_damaging(0.868) TCGA-AD-6889-01 11 94040776 94040776 G A FOLR4 Missense_Mutation p.R217H 0.07 tolerated(0.09) benign(0.021) TCGA-AD-6889-01 11 94528271 94528271 G A AMOTL1 Silent p.R48R 0.36 TCGA-AD-6889-01 12 100451902 100451902 A G UHRF1BP1L Silent p.D1051D 0.43 TCGA-AD-6889-01 12 100452981 100452981 C A UHRF1BP1L Missense_Mutation p.D692Y 0.45 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 12 102455066 102455066 G A CCDC53 Missense_Mutation p.T37I 0.41 deleterious(0) probably_damaging(0.987) TCGA-AD-6889-01 12 104131518 104131519 - G STAB2 Frame_Shift_Ins p.R1889Pfs*3 0.26 TCGA-AD-6889-01 12 106461692 106461692 C T NUAK1 Missense_Mutation p.D292N 0.56 deleterious(0.05) possibly_damaging(0.614) TCGA-AD-6889-01 12 107126849 107126849 G A RFX4 Missense_Mutation p.G549D 0.12 tolerated(0.33) benign(0.17) TCGA-AD-6889-01 12 108926087 108926087 C T SART3 Missense_Mutation p.C527Y 0.55 tolerated(0.11) probably_damaging(0.984) TCGA-AD-6889-01 12 109278816 109278816 G A DAO Missense_Mutation p.G12R 0.46 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 12 109490439 109490439 C T USP30 5'UTR 0.50 TCGA-AD-6889-01 12 109526092 109526092 G A ALKBH2 Silent p.Y235Y 0.28 TCGA-AD-6889-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.37 TCGA-AD-6889-01 12 110385110 110385110 G A GIT2 Missense_Mutation p.A531V 0.44 tolerated(0.28) benign(0) TCGA-AD-6889-01 12 11091220 11091220 G A TAS2R14 Missense_Mutation p.A196V 0.45 tolerated(0.77) benign(0.048) TCGA-AD-6889-01 12 110977633 110977634 - T PPTC7 Frame_Shift_Ins p.L241Vfs*7 0.35 TCGA-AD-6889-01 12 111080113 111080113 C T TCTN1 Missense_Mutation p.T417I 0.36 tolerated(0.18) benign(0.054) TCGA-AD-6889-01 12 111158750 111158750 A - PPP1CC Intron 0.34 TCGA-AD-6889-01 12 111907920 111907920 G A ATXN2 Missense_Mutation p.A1103V 0.43 benign(0.277) TCGA-AD-6889-01 12 113592262 113592262 C T CCDC42B Missense_Mutation p.A171V 0.57 tolerated(0.72) benign(0.004) TCGA-AD-6889-01 12 113595332 113595332 C - DDX54 3'UTR 0.30 TCGA-AD-6889-01 12 114793439 114793440 - G TBX5 Frame_Shift_Ins p.E486* 0.39 TCGA-AD-6889-01 12 115109975 115109975 G A TBX3 Missense_Mutation p.R635C 0.31 deleterious(0) possibly_damaging(0.847) TCGA-AD-6889-01 12 117655959 117655959 C T NOS1 Missense_Mutation p.R1428Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-AD-6889-01 12 117725890 117725890 T C NOS1 Silent p.S372S 0.47 TCGA-AD-6889-01 12 118105388 118105388 C T KSR2 Silent p.Q354Q 0.59 TCGA-AD-6889-01 12 118490204 118490204 G A WSB2 Silent p.S31S 0.47 TCGA-AD-6889-01 12 120599364 120599364 T - GCN1L1 Frame_Shift_Del p.K789Rfs*4 0.08 TCGA-AD-6889-01 12 121431384 121431384 C A HNF1A Silent p.T196T 0.10 TCGA-AD-6889-01 12 122261244 122261244 C - SETD1B Frame_Shift_Del p.Q1546Sfs*11 0.37 TCGA-AD-6889-01 12 122691051 122691051 G A B3GNT4 Missense_Mutation p.A85T 0.32 tolerated(0.79) benign(0.003) TCGA-AD-6889-01 12 123290799 123290799 C T CCDC62 Missense_Mutation p.T603M 0.41 tolerated(0.05) benign(0.136) TCGA-AD-6889-01 12 12356330 12356330 T C LRP6 Missense_Mutation p.M152V 0.50 deleterious(0) possibly_damaging(0.902) TCGA-AD-6889-01 12 123694601 123694601 A G MPHOSPH9 Splice_Site p.X246_splice 0.50 TCGA-AD-6889-01 12 124081421 124081421 A G TMED2 3'UTR 0.50 TCGA-AD-6889-01 12 124421689 124421689 C A CCDC92 Missense_Mutation p.Q304H 0.52 tolerated_low_confidence(0.15) benign(0.404) TCGA-AD-6889-01 12 124827661 124827661 G A NCOR2 Missense_Mutation p.S1609L 0.48 probably_damaging(0.999) TCGA-AD-6889-01 12 124832800 124832801 - G NCOR2 Frame_Shift_Ins p.H1302Pfs*2 0.26 TCGA-AD-6889-01 12 124848228 124848228 G - NCOR2 Frame_Shift_Del p.I976Sfs*87 0.55 TCGA-AD-6889-01 12 124862905 124862905 T C NCOR2 Missense_Mutation p.K682R 0.43 unknown(0) TCGA-AD-6889-01 12 129180402 129180402 C T TMEM132C Silent p.D561D 0.41 TCGA-AD-6889-01 12 130184705 130184705 G - TMEM132D Frame_Shift_Del p.T207Rfs*75 0.41 TCGA-AD-6889-01 12 130648177 130648177 G A FZD10 Nonsense_Mutation p.W230* 0.46 TCGA-AD-6889-01 12 132209988 132209988 G A SFSWAP Silent p.T215T 0.37 TCGA-AD-6889-01 12 133281247 133281247 G A PXMP2 Missense_Mutation p.A188T 0.37 tolerated(0.44) benign(0.038) TCGA-AD-6889-01 12 133312085 133312085 C T ANKLE2 Missense_Mutation p.R536H 0.48 tolerated(0.18) benign(0.091) TCGA-AD-6889-01 12 133375018 133375018 C T GOLGA3 Missense_Mutation p.E616K 0.52 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 12 133502446 133502446 C A ZNF605 Missense_Mutation p.S511I 0.42 deleterious(0.03) possibly_damaging(0.493) TCGA-AD-6889-01 12 13716818 13716818 G A GRIN2B Silent p.D1118D 0.07 TCGA-AD-6889-01 12 14578391 14578391 T C ATF7IP Silent p.N514N 0.44 TCGA-AD-6889-01 12 14929002 14929002 A - H2AFJ 3'UTR 0.12 TCGA-AD-6889-01 12 19283064 19283064 G T PLEKHA5 Missense_Mutation p.D57Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 12 20522734 20522734 G A PDE3A Silent p.A172A 0.37 TCGA-AD-6889-01 12 21220308 21220308 C T SLCO1B7 Nonsense_Mutation p.R533* 0.43 TCGA-AD-6889-01 12 21531214 21531214 A G IAPP Missense_Mutation p.T42A 0.52 deleterious(0.01) benign(0.298) TCGA-AD-6889-01 12 24365429 24365429 G A MIR920 RNA 0.33 TCGA-AD-6889-01 12 2675693 2675693 G A CACNA1C Silent p.T538T 0.40 TCGA-AD-6889-01 12 27234970 27234970 G A C12orf71 Silent p.D149D 0.43 TCGA-AD-6889-01 12 29485599 29485599 A - FAR2 Frame_Shift_Del p.K443Nfs*4 0.39 TCGA-AD-6889-01 12 305292 305292 C T SLC6A12 Missense_Mutation p.E442K 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-AD-6889-01 12 31545313 31545313 G A DENND5B Silent p.T1118T 0.49 TCGA-AD-6889-01 12 32832278 32832278 G T DNM1L 5'UTR 0.61 TCGA-AD-6889-01 12 336822 336822 C T SLC6A13 Missense_Mutation p.A282T 0.38 deleterious(0.01) probably_damaging(1) TCGA-AD-6889-01 12 40643744 40643744 C A LRRK2 Missense_Mutation p.L319I 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-AD-6889-01 12 40953036 40953036 G A MUC19 Splice_Site 0.08 TCGA-AD-6889-01 12 41386998 41386998 C T CNTN1 Silent p.R680R 0.41 TCGA-AD-6889-01 12 44180569 44180569 T - IRAK4 3'UTR 0.37 TCGA-AD-6889-01 12 44782339 44782339 G A TMEM117 Missense_Mutation p.V477I 0.45 tolerated_low_confidence(0.16) benign(0.288) TCGA-AD-6889-01 12 48174350 48174350 T C SLC48A1 3'UTR 0.50 TCGA-AD-6889-01 12 48179648 48179648 G T HDAC7 Missense_Mutation p.Q865K 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-AD-6889-01 12 48180480 48180480 G A HDAC7 Silent p.V820V 0.38 TCGA-AD-6889-01 12 48272678 48272678 G A VDR Intron 0.67 TCGA-AD-6889-01 12 48380200 48380200 A G COL2A1 Silent p.P482P 0.70 TCGA-AD-6889-01 12 49176473 49176473 C T ADCY6 Missense_Mutation p.A249T 0.38 tolerated(0.59) benign(0) TCGA-AD-6889-01 12 49360095 49360095 C T WNT10B Missense_Mutation p.C318Y 0.47 deleterious(0.04) probably_damaging(0.996) TCGA-AD-6889-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.55 TCGA-AD-6889-01 12 49934797 49934797 C A KCNH3 Silent p.G64G 0.48 TCGA-AD-6889-01 12 50536902 50536902 C A CERS5 Missense_Mutation p.R130M 0.35 deleterious(0) probably_damaging(0.98) TCGA-AD-6889-01 12 50745048 50745049 AG - FAM186A Frame_Shift_Del p.L1856Ffs*9 0.44 TCGA-AD-6889-01 12 52307552 52307552 G T ACVRL1 Missense_Mutation p.G175W 0.23 deleterious(0.02) benign(0.058) TCGA-AD-6889-01 12 52863634 52863634 C T KRT6C Missense_Mutation p.R415H 0.08 deleterious(0.04) probably_damaging(0.996) TCGA-AD-6889-01 12 52881343 52881343 G T KRT6A 3'UTR 0.30 TCGA-AD-6889-01 12 53689707 53689707 C T PFDN5 Silent p.L53L 0.28 TCGA-AD-6889-01 12 53881047 53881047 C T MAP3K12 Silent p.T43T 0.33 TCGA-AD-6889-01 12 54964039 54964039 G T PDE1B Missense_Mutation p.W164C 0.38 deleterious(0) probably_damaging(0.993) TCGA-AD-6889-01 12 56090710 56090710 G T ITGA7 Silent p.V574V 0.41 TCGA-AD-6889-01 12 56320939 56320939 C - WIBG Intron 0.43 TCGA-AD-6889-01 12 57106300 57106300 A - NACA 3'UTR 0.35 TCGA-AD-6889-01 12 57111124 57111150 GATGGGATAGCTGGTCCTCTTTTGGGG - NACA Intron 0.53 TCGA-AD-6889-01 12 57114325 57114325 G A NACA Missense_Mutation p.A330V 0.50 tolerated_low_confidence(1) benign(0.001) TCGA-AD-6889-01 12 57552324 57552324 C T LRP1 Silent p.H567H 0.22 TCGA-AD-6889-01 12 57595335 57595335 C - LRP1 Frame_Shift_Del p.R3469Gfs*24 0.39 TCGA-AD-6889-01 12 57605597 57605597 C T LRP1 Missense_Mutation p.H4420Y 0.43 benign(0.056) TCGA-AD-6889-01 12 57619332 57619332 G A NXPH4 Silent p.A243A 0.40 TCGA-AD-6889-01 12 57872364 57872364 G T ARHGAP9 Missense_Mutation p.L165I 0.10 tolerated(0.23) benign(0.009) TCGA-AD-6889-01 12 57940885 57940885 G A DCTN2 5'UTR 0.44 TCGA-AD-6889-01 12 57976959 57976959 C A KIF5A Missense_Mutation p.S1032R 0.31 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AD-6889-01 12 62892771 62892771 C T MON2 Nonsense_Mutation p.R170* 0.42 TCGA-AD-6889-01 12 62959078 62959078 T C MON2 Missense_Mutation p.L1365S 0.38 deleterious(0.02) benign(0.407) TCGA-AD-6889-01 12 62960130 62960130 C T MON2 Missense_Mutation p.P1408L 0.40 deleterious(0.02) possibly_damaging(0.527) TCGA-AD-6889-01 12 6425569 6425569 C T PLEKHG6 Missense_Mutation p.T252M 0.45 tolerated(0.51) benign(0.028) TCGA-AD-6889-01 12 64436735 64436736 - A SRGAP1 Frame_Shift_Ins p.M221Nfs*13 0.30 TCGA-AD-6889-01 12 6457044 6457045 - C SCNN1A Frame_Shift_Ins p.P728Afs*62 0.50 TCGA-AD-6889-01 12 6730270 6730270 G A LPAR5 Missense_Mutation p.R49C 0.38 tolerated(0.28) possibly_damaging(0.747) TCGA-AD-6889-01 12 6777202 6777202 G A ZNF384 Missense_Mutation p.A471V 0.46 tolerated(0.07) possibly_damaging(0.483) TCGA-AD-6889-01 12 68054793 68054793 G A DYRK2 3'UTR 0.45 TCGA-AD-6889-01 12 6952626 6952626 A G GNB3 Missense_Mutation p.I123V 0.31 tolerated(0.7) benign(0.125) TCGA-AD-6889-01 12 7016524 7016524 T C LRRC23 Missense_Mutation p.I179T 0.46 tolerated(0.56) benign(0) TCGA-AD-6889-01 12 7169069 7169069 C A C1S Intron 0.32 TCGA-AD-6889-01 12 7177938 7177939 - C C1S Frame_Shift_Ins p.R686Pfs*2 0.31 TCGA-AD-6889-01 12 71946963 71946963 A C LGR5 Missense_Mutation p.Q180P 0.40 tolerated(0.13) possibly_damaging(0.718) TCGA-AD-6889-01 12 71977712 71977713 - T LGR5 Frame_Shift_Ins p.L643Ffs*31 0.33 TCGA-AD-6889-01 12 7242010 7242010 G - C1R Frame_Shift_Del p.P215Lfs*100 0.39 TCGA-AD-6889-01 12 72667155 72667155 G A TRHDE Silent p.A199A 0.47 TCGA-AD-6889-01 12 7310658 7310658 C - CLSTN3 Frame_Shift_Del p.P953Hfs*106 0.38 TCGA-AD-6889-01 12 74932351 74932351 T - ATXN7L3B 3'UTR 0.38 TCGA-AD-6889-01 12 7526162 7526162 C T CD163L1 Missense_Mutation p.G1162R 0.38 deleterious(0.01) probably_damaging(1) TCGA-AD-6889-01 12 76424951 76424952 GC - PHLDA1 Frame_Shift_Del p.Q191Afs*225 0.45 TCGA-AD-6889-01 12 76424974 76424974 G A PHLDA1 Missense_Mutation p.P183L 0.39 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AD-6889-01 12 77439953 77439953 C T E2F7 Missense_Mutation p.E232K 0.06 tolerated(0.28) possibly_damaging(0.851) TCGA-AD-6889-01 12 78515774 78515774 T C NAV3 Silent p.G1268G 0.23 TCGA-AD-6889-01 12 78570998 78570998 G A NAV3 Silent p.E1734E 0.44 TCGA-AD-6889-01 12 81839374 81839374 C A PPFIA2 Silent p.L177L 0.46 TCGA-AD-6889-01 12 88487638 88487638 G A CEP290 Missense_Mutation p.A1073V 0.44 probably_damaging(0.999) TCGA-AD-6889-01 12 9008109 9008109 G T A2ML1 Missense_Mutation p.K923N 0.40 tolerated(0.81) benign(0.001) TCGA-AD-6889-01 12 9090444 9090444 G - PHC1 Frame_Shift_Del p.G884Vfs*21 0.18 TCGA-AD-6889-01 12 91348110 91348110 G A CCER1 Missense_Mutation p.P137L 0.55 deleterious(0.02) probably_damaging(0.958) TCGA-AD-6889-01 12 9261989 9261989 A G A2M Missense_Mutation p.F229S 0.34 deleterious(0) possibly_damaging(0.899) TCGA-AD-6889-01 12 95927672 95927672 G A USP44 Missense_Mutation p.R121W 0.42 deleterious(0) probably_damaging(0.955) TCGA-AD-6889-01 12 9875191 9875191 T - CLECL1 3'UTR 0.29 TCGA-AD-6889-01 12 98927407 98927409 TCT - TMPO In_Frame_Del p.S459del 0.42 TCGA-AD-6889-01 13 100037614 100037614 G A UBAC2 3'UTR 0.50 TCGA-AD-6889-01 13 100037662 100037662 C T UBAC2 3'UTR 0.38 TCGA-AD-6889-01 13 100153821 100153821 A G TM9SF2 5'UTR 0.39 TCGA-AD-6889-01 13 101278382 101278382 T - TMTC4 Frame_Shift_Del p.N510Tfs*19 0.28 TCGA-AD-6889-01 13 102568810 102568810 C T FGF14 Intron 0.48 TCGA-AD-6889-01 13 103459867 103459867 A - BIVM-ERCC5 Frame_Shift_Del p.T57Lfs*67 0.29 TCGA-AD-6889-01 13 111125470 111125470 G A COL4A2 Missense_Mutation p.G800R 0.39 probably_damaging(0.98) TCGA-AD-6889-01 13 111137373 111137373 A C COL4A2 Missense_Mutation p.K1008N 0.32 possibly_damaging(0.727) TCGA-AD-6889-01 13 112723708 112723708 G A SOX1 3'UTR 0.38 TCGA-AD-6889-01 13 114112219 114112219 G A DCUN1D2 3'UTR 0.42 TCGA-AD-6889-01 13 114164669 114164669 G A TMCO3 Silent p.T385T 0.44 TCGA-AD-6889-01 13 114542717 114542718 - C GAS6 Frame_Shift_Ins p.R151Pfs*27 0.29 TCGA-AD-6889-01 13 115057218 115057219 - G UPF3A Frame_Shift_Ins p.E267Rfs*4 0.19 TCGA-AD-6889-01 13 20277352 20277352 C - PSPC1 Frame_Shift_Del p.G512Afs*56 0.16 TCGA-AD-6889-01 13 20398701 20398701 C - ZMYM5 Frame_Shift_Del p.N645Ifs*56 0.31 TCGA-AD-6889-01 13 20641014 20641014 A G ZMYM2 Silent p.S1052S 0.49 TCGA-AD-6889-01 13 23909377 23909377 G A SACS Missense_Mutation p.P2880S 0.38 probably_damaging(0.998) TCGA-AD-6889-01 13 24520002 24520002 C T ANKRD20A19P RNA 0.49 TCGA-AD-6889-01 13 24520245 24520245 G A ANKRD20A19P RNA 0.68 TCGA-AD-6889-01 13 26620786 26620786 C T SHISA2 Silent p.T251T 0.38 TCGA-AD-6889-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.11 TCGA-AD-6889-01 13 28537478 28537478 G A CDX2 Missense_Mutation p.A239V 0.44 deleterious(0) probably_damaging(0.992) TCGA-AD-6889-01 13 29599502 29599502 C A MTUS2 Missense_Mutation p.H233N 0.41 deleterious(0.04) benign(0.09) TCGA-AD-6889-01 13 29600312 29600312 C T MTUS2 Missense_Mutation p.R503C 0.35 tolerated(0.06) benign(0.172) TCGA-AD-6889-01 13 32977300 32977300 G A N4BP2L1 Nonsense_Mutation p.R171* 0.43 TCGA-AD-6889-01 13 33344286 33344286 A - PDS5B Frame_Shift_Del p.T1220Rfs*10 0.31 TCGA-AD-6889-01 13 33638206 33638206 T C KL Silent p.S974S 0.41 TCGA-AD-6889-01 13 36049630 36049630 G T MAB21L1 Missense_Mutation p.H216N 0.37 tolerated(0.31) benign(0) TCGA-AD-6889-01 13 36348568 36348568 T G DCLK1 3'UTR 0.30 TCGA-AD-6889-01 13 37269921 37269921 C T SERTM1 3'UTR 0.41 TCGA-AD-6889-01 13 39261449 39261449 A G FREM2 5'UTR 0.45 TCGA-AD-6889-01 13 39588334 39588334 C T PROSER1 Missense_Mutation p.S352N 0.41 deleterious(0) benign(0.039) TCGA-AD-6889-01 13 39612707 39612707 G A NHLRC3 5'UTR 0.45 TCGA-AD-6889-01 13 42440166 42440166 C G VWA8 Missense_Mutation p.A407P 0.38 deleterious(0.04) benign(0.021) TCGA-AD-6889-01 13 46658431 46658431 T - CPB2 Frame_Shift_Del p.K66Nfs*7 0.32 TCGA-AD-6889-01 13 47345456 47345456 T C ESD 3'UTR 0.29 TCGA-AD-6889-01 13 49054264 49054264 G T RB1 3'UTR 0.59 TCGA-AD-6889-01 13 49089760 49089760 C T RCBTB2 Missense_Mutation p.A54T 0.38 tolerated(0.39) probably_damaging(0.962) TCGA-AD-6889-01 13 49924998 49924998 C T CAB39L Missense_Mutation p.C149Y 0.37 deleterious(0) probably_damaging(0.952) TCGA-AD-6889-01 13 50108187 50108187 G A RCBTB1 3'UTR 0.30 TCGA-AD-6889-01 13 50235246 50235246 C T EBPL Missense_Mutation p.S160N 0.41 tolerated(0.26) benign(0.034) TCGA-AD-6889-01 13 50587846 50587846 G T TRIM13 3'Flank 0.33 TCGA-AD-6889-01 13 52606363 52606364 - A UTP14C 3'UTR 0.38 TCGA-AD-6889-01 13 53035332 53035332 A T CKAP2 Missense_Mutation p.N125I 0.11 deleterious(0.04) possibly_damaging(0.803) TCGA-AD-6889-01 13 53418723 53418723 G A PCDH8 Missense_Mutation p.P1062L 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AD-6889-01 13 58208363 58208363 G A PCDH17 Silent p.A561A 0.52 TCGA-AD-6889-01 13 61083902 61083902 T C TDRD3 Silent p.D288D 0.31 TCGA-AD-6889-01 13 73357634 73357634 A - PIBF1 Frame_Shift_Del p.V12* 0.29 TCGA-AD-6889-01 13 75936218 75936218 C T TBC1D4 Missense_Mutation p.A342T 0.42 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 13 78184183 78184183 G A SCEL Missense_Mutation p.G427S 0.11 tolerated(0.18) benign(0.085) TCGA-AD-6889-01 13 80911526 80911526 G A SPRY2 Silent p.A105A 0.10 TCGA-AD-6889-01 13 92345610 92345611 - T GPC5 Frame_Shift_Ins p.D168* 0.33 TCGA-AD-6889-01 13 96410006 96410006 G A DNAJC3 Missense_Mutation p.G168R 0.33 tolerated(0.39) benign(0.005) TCGA-AD-6889-01 13 99040702 99040702 C A FARP1 Silent p.R275R 0.45 TCGA-AD-6889-01 13 99083386 99083386 C T FARP1 Silent p.C665C 0.58 TCGA-AD-6889-01 13 99361023 99361023 T C SLC15A1 Splice_Site p.X356_splice 0.40 TCGA-AD-6889-01 14 100182224 100182224 G T CYP46A1 Missense_Mutation p.W257C 0.15 tolerated(1) benign(0.01) TCGA-AD-6889-01 14 100616005 100616005 C T DEGS2 Missense_Mutation p.R42H 0.46 tolerated(0.77) benign(0.001) TCGA-AD-6889-01 14 101350503 101350503 C T RTL1 Missense_Mutation p.G208D 0.40 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 14 101509372 101509373 - G MIR1185-1 RNA 0.09 TCGA-AD-6889-01 14 102028466 102028466 C T DIO3 Silent p.D211D 0.28 TCGA-AD-6889-01 14 102028508 102028508 G A DIO3 Silent p.R225R 0.73 TCGA-AD-6889-01 14 102481602 102481602 A G DYNC1H1 Missense_Mutation p.D2392G 0.41 benign(0.007) TCGA-AD-6889-01 14 103416895 103416895 G - CDC42BPB Frame_Shift_Del p.Q1073Rfs*38 0.26 TCGA-AD-6889-01 14 103986541 103986541 C T CKB Silent p.V295V 0.47 TCGA-AD-6889-01 14 104145760 104145760 C T KLC1 Missense_Mutation p.L510F 0.53 deleterious(0.03) probably_damaging(0.975) TCGA-AD-6889-01 14 104642401 104642401 G - KIF26A Frame_Shift_Del p.L1096Wfs*152 0.45 TCGA-AD-6889-01 14 105212633 105212633 C T ADSSL1 Missense_Mutation p.A454V 0.45 tolerated(0.08) benign(0.004) TCGA-AD-6889-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.47 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 14 105411783 105411783 C T AHNAK2 Silent p.A3335A 0.43 TCGA-AD-6889-01 14 105412000 105412000 G A AHNAK2 Missense_Mutation p.T3263M 0.34 benign(0.003) TCGA-AD-6889-01 14 105415228 105415228 A G AHNAK2 Missense_Mutation p.M2187T 0.39 benign(0) TCGA-AD-6889-01 14 105617212 105617212 C - JAG2 Frame_Shift_Del p.G473Afs*7 0.29 TCGA-AD-6889-01 14 105686425 105686425 T A BRF1 Missense_Mutation p.D453V 0.32 deleterious(0) probably_damaging(0.982) TCGA-AD-6889-01 14 105716863 105716863 G A BTBD6 Missense_Mutation p.G438S 0.58 deleterious(0.03) possibly_damaging(0.775) TCGA-AD-6889-01 14 106733539 106733539 G A IGHV1-24 Missense_Mutation p.A14V 0.51 tolerated(0.2) benign(0.032) TCGA-AD-6889-01 14 106780613 106780613 T G IGHV4-28 Missense_Mutation p.K84T 0.29 deleterious(0.01) possibly_damaging(0.511) TCGA-AD-6889-01 14 107078774 107078774 C T IGHV1-58 Missense_Mutation p.G12E 0.43 benign(0.004) TCGA-AD-6889-01 14 107178837 107178837 A G IGHV2-70 Missense_Mutation p.Y114H 0.41 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 14 19563514 19563514 A G POTEG Missense_Mutation p.E343G 0.30 deleterious(0.01) benign(0.297) TCGA-AD-6889-01 14 20852291 20852291 C T TEP1 Missense_Mutation p.R1147H 0.36 tolerated(0.08) benign(0.017) TCGA-AD-6889-01 14 20871889 20871889 C T TEP1 Missense_Mutation p.R396H 0.35 tolerated(0.11) benign(0.081) TCGA-AD-6889-01 14 21561195 21561195 G A ZNF219 Silent p.C87C 0.56 TCGA-AD-6889-01 14 21961134 21961135 - C TOX4 Frame_Shift_Ins p.T456Dfs*60 0.31 TCGA-AD-6889-01 14 21966439 21966439 T C METTL3 Missense_Mutation p.Y569C 0.41 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 14 23282566 23282566 C T SLC7A7 Silent p.E14E 0.33 TCGA-AD-6889-01 14 23315101 23315101 C T MMP14 Silent p.G534G 0.08 TCGA-AD-6889-01 14 23502724 23502724 G A PSMB5 Missense_Mutation p.R120W 0.64 deleterious(0.01) probably_damaging(0.987) TCGA-AD-6889-01 14 23568742 23568742 C T C14orf119 3'UTR 0.40 TCGA-AD-6889-01 14 23853760 23853760 G A MYH6 Missense_Mutation p.A1819V 0.47 tolerated(0.06) benign(0.045) TCGA-AD-6889-01 14 23898532 23898532 A G MYH7 Missense_Mutation p.M388T 0.33 tolerated(0.05) benign(0.209) TCGA-AD-6889-01 14 23944942 23944942 T C NGDN Silent p.N125N 0.47 TCGA-AD-6889-01 14 24025914 24025914 G A THTPA 5'UTR 0.26 TCGA-AD-6889-01 14 24619809 24619809 G - RNF31 Frame_Shift_Del p.D402Mfs*90 0.29 TCGA-AD-6889-01 14 24729844 24729844 C G TGM1 Missense_Mutation p.S190T 0.53 tolerated(0.41) benign(0.42) TCGA-AD-6889-01 14 24877215 24877215 C - NYNRIN Frame_Shift_Del p.P115Lfs*4 0.40 TCGA-AD-6889-01 14 28733948 28733948 C T BNIP3P1 RNA 0.44 TCGA-AD-6889-01 14 31144249 31144249 C T SCFD1 Missense_Mutation p.T407I 0.43 deleterious(0) probably_damaging(0.996) TCGA-AD-6889-01 14 32562695 32562696 - A ARHGAP5 Frame_Shift_Ins p.N943Kfs*10 0.38 TCGA-AD-6889-01 14 35032213 35032213 T - SNX6 3'UTR 0.33 TCGA-AD-6889-01 14 35331519 35331519 A - BAZ1A Frame_Shift_Del p.F41Lfs*16 0.35 TCGA-AD-6889-01 14 35761806 35761806 G T PSMA6 Intron 0.42 TCGA-AD-6889-01 14 36005555 36005556 - T INSM2 3'UTR 0.34 TCGA-AD-6889-01 14 36988636 36988636 T - NKX2-1 Intron 0.73 TCGA-AD-6889-01 14 38724799 38724799 G A CLEC14A Silent p.C143C 0.35 TCGA-AD-6889-01 14 42373514 42373514 G T LRFN5 3'UTR 0.33 TCGA-AD-6889-01 14 45668042 45668042 A G FANCM Missense_Mutation p.E1971G 0.41 tolerated(0.05) benign(0.01) TCGA-AD-6889-01 14 50136311 50136311 G T POLE2 Silent p.T141T 0.46 TCGA-AD-6889-01 14 51378574 51378574 G A PYGL Missense_Mutation p.H615Y 0.42 tolerated(0.5) benign(0.006) TCGA-AD-6889-01 14 51410879 51410879 C A PYGL Missense_Mutation p.K81N 0.38 deleterious(0) benign(0.373) TCGA-AD-6889-01 14 53223317 53223317 T - STYX Frame_Shift_Del p.F99Sfs*3 0.32 TCGA-AD-6889-01 14 54944722 54944722 T - GMFB 3'UTR 0.36 TCGA-AD-6889-01 14 56126396 56126396 C - KTN1 Frame_Shift_Del p.P993Lfs*6 0.23 TCGA-AD-6889-01 14 57271049 57271049 G - OTX2 Frame_Shift_Del p.R44Gfs*15 0.33 TCGA-AD-6889-01 14 59114372 59114372 A G DACT1 3'Flank 0.57 TCGA-AD-6889-01 14 59114800 59114801 - T DACT1 3'Flank 0.33 TCGA-AD-6889-01 14 60591629 60591629 G A PCNXL4 Missense_Mutation p.A680T 0.44 tolerated(0.32) benign(0.002) TCGA-AD-6889-01 14 61190422 61190422 C - SIX4 Frame_Shift_Del p.G124Afs*26 0.41 TCGA-AD-6889-01 14 61997206 61997206 G A RP11-47I22.4 Missense_Mutation p.A57T 0.40 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 14 64542818 64542818 G T SYNE2 Missense_Mutation p.K3674N 0.47 probably_damaging(0.999) TCGA-AD-6889-01 14 64936713 64936713 T C AKAP5 3'UTR 0.45 TCGA-AD-6889-01 14 64939546 64939546 A G AKAP5 3'UTR 0.33 TCGA-AD-6889-01 14 65008440 65008440 C T HSPA2 Silent p.Y291Y 0.56 TCGA-AD-6889-01 14 65194687 65194687 G A PLEKHG3 Missense_Mutation p.R113H 0.25 tolerated(0.37) benign(0.049) TCGA-AD-6889-01 14 65251016 65251016 C T SPTB Silent p.A1317A 0.34 TCGA-AD-6889-01 14 65544615 65544615 G A MAX Intron 0.33 TCGA-AD-6889-01 14 67389497 67389497 C - GPHN Frame_Shift_Del p.P192Lfs*44 0.17 TCGA-AD-6889-01 14 69847232 69847232 C - ERH 3'UTR 0.36 TCGA-AD-6889-01 14 70989233 70989234 - A ADAM20 3'UTR 0.29 TCGA-AD-6889-01 14 74205720 74205720 G T ELMSAN1 Missense_Mutation p.P331Q 0.41 tolerated(0.18) benign(0.014) TCGA-AD-6889-01 14 74967607 74967607 G - LTBP2 Frame_Shift_Del p.H1816Tfs*32 0.33 TCGA-AD-6889-01 14 75142569 75142569 T C AREL1 Missense_Mutation p.T305A 0.37 tolerated(0.85) benign(0) TCGA-AD-6889-01 14 77715670 77715670 G A TMEM63C Missense_Mutation p.R636H 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-AD-6889-01 14 77796689 77796689 G A GSTZ1 Missense_Mutation p.A171T 0.47 deleterious(0.02) benign(0.023) TCGA-AD-6889-01 14 77893874 77893874 C T VIPAS39 3'UTR 0.58 TCGA-AD-6889-01 14 80669336 80669336 G A DIO2 Missense_Mutation p.P209L 0.49 deleterious(0.01) possibly_damaging(0.808) TCGA-AD-6889-01 14 81646522 81646522 T - GTF2A1 3'UTR 0.55 TCGA-AD-6889-01 14 86090421 86090421 C T FLRT2 3'UTR 0.33 TCGA-AD-6889-01 14 89030002 89030002 T C ZC3H14 Missense_Mutation p.I15T 0.43 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 14 90871080 90871080 T - CALM1 3'UTR 0.28 TCGA-AD-6889-01 14 92442460 92442460 T C TRIP11 Silent p.K1778K 0.46 TCGA-AD-6889-01 14 93303735 93303735 C T GOLGA5 Missense_Mutation p.R686C 0.47 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 14 93650304 93650304 G A MOAP1 Missense_Mutation p.P95L 0.66 deleterious(0.01) possibly_damaging(0.856) TCGA-AD-6889-01 14 94776243 94776243 G A SERPINA6 Silent p.S238S 0.62 TCGA-AD-6889-01 14 95235395 95235395 A C GSC Missense_Mutation p.L172R 0.42 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 14 96178697 96178697 G A TCL1A Missense_Mutation p.R53W 0.54 deleterious(0) possibly_damaging(0.785) TCGA-AD-6889-01 14 99866536 99866536 T A SETD3 Missense_Mutation p.N413I 0.36 deleterious(0.01) probably_damaging(0.925) TCGA-AD-6889-01 15 22382845 22382845 G A OR4N4 Missense_Mutation p.A125T 0.19 deleterious(0) benign(0.108) TCGA-AD-6889-01 15 23048919 23048919 G A NIPA1 Silent p.T300T 0.39 TCGA-AD-6889-01 15 23811791 23811791 G A MKRN3 Missense_Mutation p.A288T 0.51 deleterious(0.01) probably_damaging(0.984) TCGA-AD-6889-01 15 23931814 23931814 C T NDN Missense_Mutation p.R184H 0.43 tolerated(0.2) benign(0.005) TCGA-AD-6889-01 15 27188386 27188386 C T GABRA5 Missense_Mutation p.T301M 0.64 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 15 28326976 28326976 C T OCA2 Silent p.P15P 0.48 TCGA-AD-6889-01 15 28389921 28389921 G A HERC2 Silent p.L3680L 0.36 TCGA-AD-6889-01 15 28443784 28443784 G A HERC2 Silent p.G2616G 0.09 TCGA-AD-6889-01 15 31217427 31217427 C T FAN1 Missense_Mutation p.P757L 0.42 deleterious(0) possibly_damaging(0.864) TCGA-AD-6889-01 15 31327768 31327768 G A TRPM1 Missense_Mutation p.A911V 0.67 deleterious(0) probably_damaging(0.95) TCGA-AD-6889-01 15 32925291 32925291 C T ARHGAP11A Missense_Mutation p.A406V 0.15 tolerated(0.07) probably_damaging(0.916) TCGA-AD-6889-01 15 32935855 32935855 G A SCG5 Nonsense_Mutation p.W21* 0.39 TCGA-AD-6889-01 15 34032098 34032098 A G RYR3 Silent p.P2574P 0.26 TCGA-AD-6889-01 15 34105692 34105692 A G RYR3 Missense_Mutation p.K3472E 0.36 possibly_damaging(0.782) TCGA-AD-6889-01 15 34522181 34522181 T G EMC4 3'UTR 0.56 TCGA-AD-6889-01 15 40630004 40630004 C T C15orf52 Missense_Mutation p.D246N 0.38 deleterious(0.02) possibly_damaging(0.726) TCGA-AD-6889-01 15 40631782 40631782 C - C15orf52 Frame_Shift_Del p.M99Wfs*3 0.38 TCGA-AD-6889-01 15 40913628 40913628 A G CASC5 Missense_Mutation p.H415R 0.48 deleterious(0) probably_damaging(0.921) TCGA-AD-6889-01 15 41064073 41064073 G A C15orf62 3'UTR 0.40 TCGA-AD-6889-01 15 41226908 41226908 G A DLL4 Missense_Mutation p.S338N 0.37 deleterious(0.01) possibly_damaging(0.867) TCGA-AD-6889-01 15 42115703 42115703 C T MAPKBP1 Silent p.I1225I 0.43 TCGA-AD-6889-01 15 42201952 42201952 A G EHD4 Missense_Mutation p.L345P 0.46 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 15 42836268 42836268 G A LRRC57 3'UTR 0.39 TCGA-AD-6889-01 15 43712668 43712668 A C TP53BP1 Missense_Mutation p.F1506V 0.37 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 15 44066474 44066474 C T ELL3 Missense_Mutation p.R315H 0.14 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 15 45248933 45248933 G A C15orf43 Missense_Mutation p.R6H 0.11 deleterious(0.02) possibly_damaging(0.484) TCGA-AD-6889-01 15 45404917 45404917 C A DUOX2 Splice_Site p.X54_splice 0.17 TCGA-AD-6889-01 15 45725493 45725493 A T C15orf48 3'UTR 0.33 TCGA-AD-6889-01 15 45848337 45848338 - G RP11-96O20.2 5'Flank 0.31 TCGA-AD-6889-01 15 49143443 49143443 A G SHC4 Silent p.P415P 0.48 TCGA-AD-6889-01 15 49304985 49304985 C T SECISBP2L Missense_Mutation p.D531N 0.09 deleterious(0.03) benign(0.199) TCGA-AD-6889-01 15 52497193 52497193 G A MYO5C Silent p.C1563C 0.09 TCGA-AD-6889-01 15 52901069 52901070 TT - FAM214A Frame_Shift_Del p.N681* 0.26 TCGA-AD-6889-01 15 54626040 54626040 T - UNC13C Frame_Shift_Del p.F1525Lfs*3 0.28 TCGA-AD-6889-01 15 55632953 55632953 C A PIGB Silent p.G330G 0.39 TCGA-AD-6889-01 15 55971482 55971482 A G PRTG Splice_Site p.X378_splice 0.53 TCGA-AD-6889-01 15 56155239 56155239 G A NEDD4 Silent p.C529C 0.42 TCGA-AD-6889-01 15 56388705 56388705 C A RFX7 Missense_Mutation p.Q407H 0.60 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 15 57809176 57809176 A G CGNL1 Missense_Mutation p.K868E 0.46 deleterious(0.04) benign(0.005) TCGA-AD-6889-01 15 58902629 58902629 G - ADAM10 Frame_Shift_Del p.P631Lfs*17 0.31 TCGA-AD-6889-01 15 59041763 59041763 T G ADAM10 5'UTR 0.42 TCGA-AD-6889-01 15 63881043 63881043 A - USP3 Intron 0.30 TCGA-AD-6889-01 15 63967184 63967184 G A HERC1 Silent p.G2401G 0.45 TCGA-AD-6889-01 15 63986650 63986650 C T HERC1 Missense_Mutation p.V1781I 0.40 benign(0.132) TCGA-AD-6889-01 15 64204325 64204325 A G DAPK2 Silent p.Y310Y 0.46 TCGA-AD-6889-01 15 64418320 64418320 A G SNX1 Missense_Mutation p.R185G 0.43 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 15 67681234 67681234 A - IQCH Frame_Shift_Del p.I510Sfs*2 0.28 TCGA-AD-6889-01 15 68118647 68118647 C T SKOR1 Missense_Mutation p.R347C 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AD-6889-01 15 68491954 68491954 T C CALML4 Missense_Mutation p.M77V 0.45 tolerated(0.22) benign(0.016) TCGA-AD-6889-01 15 68503608 68503608 A G CLN6 Missense_Mutation p.C179R 0.32 deleterious(0.03) benign(0.046) TCGA-AD-6889-01 15 69238506 69238506 C T SPESP1 Silent p.P211P 0.45 TCGA-AD-6889-01 15 71124693 71124693 C T LARP6 Missense_Mutation p.V392I 0.42 tolerated(0.29) benign(0.001) TCGA-AD-6889-01 15 72533869 72533869 T C PARP6 Missense_Mutation p.N607S 0.34 tolerated(0.22) benign(0.328) TCGA-AD-6889-01 15 73470706 73470706 G A NEO1 Missense_Mutation p.C410Y 0.47 deleterious(0) probably_damaging(0.939) TCGA-AD-6889-01 15 73635757 73635757 C T HCN4 Missense_Mutation p.R393H 0.51 deleterious(0) unknown(0) TCGA-AD-6889-01 15 73862580 73862580 G T NPTN Missense_Mutation p.P342H 0.43 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 15 73889609 73889609 A G NPTN Missense_Mutation p.W65R 0.41 deleterious(0) probably_damaging(0.986) TCGA-AD-6889-01 15 74467702 74467702 C T ISLR Missense_Mutation p.P168L 0.61 tolerated(0.05) possibly_damaging(0.617) TCGA-AD-6889-01 15 75308987 75308987 G A SCAMP5 Missense_Mutation p.G64R 0.44 deleterious(0.04) probably_damaging(1) TCGA-AD-6889-01 15 75982101 75982101 G A CSPG4 Silent p.S435S 0.45 TCGA-AD-6889-01 15 75982325 75982325 T C CSPG4 Missense_Mutation p.N361D 0.47 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 15 77425347 77425347 C A PEAK1 Missense_Mutation p.K1359N 0.42 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 15 78214111 78214111 T C RP11-114H24.7 Intron 0.39 TCGA-AD-6889-01 15 78305373 78305373 C T TBC1D2B Missense_Mutation p.E688K 0.41 tolerated(0.59) benign(0.004) TCGA-AD-6889-01 15 79292251 79292251 G A RASGRF1 Silent p.F876F 0.44 TCGA-AD-6889-01 15 79749974 79749974 G T KIAA1024 Missense_Mutation p.Q495H 0.38 tolerated_low_confidence(0.43) benign(0.001) TCGA-AD-6889-01 15 81201537 81201537 G A KIAA1199 Missense_Mutation p.G563S 0.55 deleterious(0.01) probably_damaging(1) TCGA-AD-6889-01 15 83437637 83437637 T C FSD2 Silent p.V516V 0.47 TCGA-AD-6889-01 15 83776431 83776431 C T TM6SF1 5'UTR 0.45 TCGA-AD-6889-01 15 83790720 83790720 T C TM6SF1 Missense_Mutation p.M149T 0.42 tolerated(0.09) benign(0.007) TCGA-AD-6889-01 15 89021115 89021115 G A MRPS11 Missense_Mutation p.G164R 0.53 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 15 89073985 89073985 G A DET1 Missense_Mutation p.R329C 0.37 deleterious(0.01) probably_damaging(0.93) TCGA-AD-6889-01 15 89719055 89719055 A G ABHD2 Missense_Mutation p.E184G 0.33 deleterious(0) probably_damaging(0.988) TCGA-AD-6889-01 15 90176924 90176924 C T KIF7 Missense_Mutation p.R862H 0.20 deleterious(0.03) possibly_damaging(0.731) TCGA-AD-6889-01 15 90190147 90190147 G - KIF7 Frame_Shift_Del p.L568Wfs*31 0.27 TCGA-AD-6889-01 15 90335552 90335552 G A ANPEP Silent p.H789H 0.40 TCGA-AD-6889-01 15 90611596 90611596 C T ZNF710 Silent p.C409C 0.60 TCGA-AD-6889-01 15 90631709 90631709 T A IDH2 Missense_Mutation p.D187V 0.47 deleterious_low_confidence(0.01) benign(0.151) TCGA-AD-6889-01 15 91421473 91421473 G T FURIN Missense_Mutation p.G260V 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 15 91430230 91430230 C T FES Nonsense_Mutation p.R143* 0.54 TCGA-AD-6889-01 15 91436532 91436532 C A FES Missense_Mutation p.L645M 0.43 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 15 99486166 99486166 C T IGF1R Nonsense_Mutation p.R1158* 0.44 TCGA-AD-6889-01 16 10524962 10524962 G A ATF7IP2 Missense_Mutation p.C162Y 0.37 tolerated(0.27) benign(0.013) TCGA-AD-6889-01 16 10868921 10868921 A - TVP23A Frame_Shift_Del p.F41Sfs*3 0.33 TCGA-AD-6889-01 16 11000890 11000890 C T CIITA Missense_Mutation p.T514M 0.65 deleterious(0.05) benign(0.067) TCGA-AD-6889-01 16 111242 111242 C T RHBDF1 Missense_Mutation p.C478Y 0.33 deleterious(0) benign(0.372) TCGA-AD-6889-01 16 12450129 12450129 G A SNX29 Missense_Mutation p.R631Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 16 1246005 1246005 G A CACNA1H Missense_Mutation p.A209T 0.10 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 16 14346301 14346301 C A MKL2 Missense_Mutation p.P832H 0.55 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 16 1498422 1498422 G A CLCN7 Silent p.D649D 0.32 TCGA-AD-6889-01 16 1498435 1498435 C T CLCN7 Missense_Mutation p.G645D 0.37 deleterious(0.04) possibly_damaging(0.599) TCGA-AD-6889-01 16 1592020 1592020 C T TMEM204 Silent p.L127L 0.41 TCGA-AD-6889-01 16 16150126 16150126 T G ABCC1 Missense_Mutation p.F551V 0.39 deleterious(0) possibly_damaging(0.816) TCGA-AD-6889-01 16 17292142 17292142 G A XYLT1 Missense_Mutation p.R406W 0.43 deleterious(0) probably_damaging(0.967) TCGA-AD-6889-01 16 1756641 1756641 C T MAPK8IP3 Missense_Mutation p.R101C 0.35 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 16 19078970 19078970 T - COQ7 5'UTR 0.43 TCGA-AD-6889-01 16 19128924 19128924 T - ITPRIPL2 3'UTR 0.34 TCGA-AD-6889-01 16 19132822 19132822 C - ITPRIPL2 3'UTR 0.33 TCGA-AD-6889-01 16 19548632 19548632 A - CCP110 Frame_Shift_Del p.N549Tfs*6 0.35 TCGA-AD-6889-01 16 19718153 19718153 A - KNOP1 3'UTR 0.62 TCGA-AD-6889-01 16 19725515 19725515 G A KNOP1 Silent p.I281I 0.10 TCGA-AD-6889-01 16 20329743 20329743 G A GP2 Silent p.N342N 0.43 TCGA-AD-6889-01 16 2042700 2042700 C T SYNGR3 Missense_Mutation p.A134V 0.54 tolerated(0.14) benign(0.227) TCGA-AD-6889-01 16 20975597 20975597 A G DNAH3 Silent p.D3203D 0.48 TCGA-AD-6889-01 16 20976721 20976721 C - DNAH3 Frame_Shift_Del p.V2829Yfs*9 0.30 TCGA-AD-6889-01 16 21063028 21063028 G - DNAH3 Frame_Shift_Del p.R1401Gfs*3 0.28 TCGA-AD-6889-01 16 21123382 21123382 C A DNAH3 Missense_Mutation p.D618Y 0.42 deleterious(0) possibly_damaging(0.781) TCGA-AD-6889-01 16 2138135 2138135 G A TSC2 Missense_Mutation p.A1719T 0.24 tolerated(0.06) possibly_damaging(0.763) TCGA-AD-6889-01 16 22256035 22256035 C T EEF2K Missense_Mutation p.R111C 0.36 tolerated(0.19) benign(0) TCGA-AD-6889-01 16 22358911 22358911 G A CDR2 Missense_Mutation p.A247V 0.42 tolerated(1) benign(0.079) TCGA-AD-6889-01 16 2283955 2283955 G A E4F1 Missense_Mutation p.A447T 0.38 tolerated(0.24) possibly_damaging(0.802) TCGA-AD-6889-01 16 2288454 2288454 C A DNASE1L2 3'UTR 0.19 TCGA-AD-6889-01 16 2367377 2367377 G A ABCA3 Missense_Mutation p.R340C 0.46 deleterious(0.03) benign(0.141) TCGA-AD-6889-01 16 23700914 23700914 C T PLK1 Missense_Mutation p.P509S 0.49 deleterious(0.04) probably_damaging(0.914) TCGA-AD-6889-01 16 27761369 27761369 G A KIAA0556 Missense_Mutation p.V1030M 0.45 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 16 2809397 2809397 G A SRRM2 Missense_Mutation p.R245Q 0.08 unknown(0) TCGA-AD-6889-01 16 2848614 2848614 G T SNORA3 5'Flank 0.58 TCGA-AD-6889-01 16 28509835 28509835 C T APOBR 3'UTR 0.35 TCGA-AD-6889-01 16 28604809 28604821 GTGAGGGTACACT CTCAGGGTGCACC SULT1A2 Missense_Mutation p.YPH149HPE 0.14 TCGA-AD-6889-01 16 28618303 28618303 G T SULT1A1 Missense_Mutation p.D156E 0.15 tolerated(1) benign(0.023) TCGA-AD-6889-01 16 29825915 29825915 C - PRRT2 Frame_Shift_Del p.V383Sfs*? 0.38 TCGA-AD-6889-01 16 30106700 30106700 G - YPEL3 Frame_Shift_Del p.P35Rfs*59 0.30 TCGA-AD-6889-01 16 30369819 30369819 G A TBC1D10B Missense_Mutation p.R625W 0.47 deleterious(0) probably_damaging(0.943) TCGA-AD-6889-01 16 30407069 30407069 G A ZNF48 5'UTR 0.40 TCGA-AD-6889-01 16 30616148 30616148 C T ZNF689 Missense_Mutation p.E314K 0.36 tolerated(0.13) probably_damaging(0.996) TCGA-AD-6889-01 16 30666121 30666121 C - PRR14 Frame_Shift_Del p.P279Qfs*2 0.40 TCGA-AD-6889-01 16 30777867 30777867 C T RNF40 Silent p.I427I 0.62 TCGA-AD-6889-01 16 30785347 30785347 G A RNF40 Missense_Mutation p.R973Q 0.54 deleterious(0.05) benign(0.059) TCGA-AD-6889-01 16 30977317 30977317 C - SETD1A Frame_Shift_Del p.G708Vfs*95 0.37 TCGA-AD-6889-01 16 30990683 30990683 C A SETD1A Silent p.P1192P 0.42 TCGA-AD-6889-01 16 310110 310110 C T ITFG3 Silent p.C176C 0.55 TCGA-AD-6889-01 16 31141636 31141636 C - KAT8 Frame_Shift_Del p.Y323Tfs*48 0.34 TCGA-AD-6889-01 16 3163440 3163440 A G ZNF205 Silent p.A3A 0.46 TCGA-AD-6889-01 16 3299631 3299631 G - MEFV Frame_Shift_Del p.R354Gfs*14 0.39 TCGA-AD-6889-01 16 3351122 3351122 T C TIGD7 5'UTR 0.52 TCGA-AD-6889-01 16 335342 335342 C T PDIA2 Missense_Mutation p.L276F 0.44 tolerated(0.2) possibly_damaging(0.808) TCGA-AD-6889-01 16 348211 348211 G - AXIN1 Frame_Shift_Del p.P432Qfs*48 0.33 TCGA-AD-6889-01 16 3632466 3632466 C T SLX4 Silent p.S1794S 0.44 TCGA-AD-6889-01 16 3705910 3705910 G A DNASE1 Missense_Mutation p.V70M 0.12 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 16 3706638 3706638 G T DNASE1 Splice_Site p.X107_splice 0.52 TCGA-AD-6889-01 16 50825519 50825519 A - CYLD Frame_Shift_Del p.N722Mfs*13 0.46 TCGA-AD-6889-01 16 51174727 51174727 C T SALL1 Missense_Mutation p.R469H 0.42 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 16 53191220 53191220 G A CHD9 Missense_Mutation p.E407K 0.24 possibly_damaging(0.593) TCGA-AD-6889-01 16 53269155 53269155 G A CHD9 Missense_Mutation p.G857D 0.31 probably_damaging(0.947) TCGA-AD-6889-01 16 53288425 53288426 GA - CHD9 Frame_Shift_Del p.E1315Dfs*3 0.38 TCGA-AD-6889-01 16 53679759 53679760 - A RPGRIP1L Frame_Shift_Ins p.D821* 0.25 TCGA-AD-6889-01 16 55734142 55734142 T C SLC6A2 Missense_Mutation p.I561T 0.42 deleterious(0) possibly_damaging(0.772) TCGA-AD-6889-01 16 56700687 56700687 A - MT1G 3'UTR 0.35 TCGA-AD-6889-01 16 57449845 57449845 C A CCL17 3'UTR 0.37 TCGA-AD-6889-01 16 57785560 57785560 G A KATNB1 Missense_Mutation p.S147N 0.41 tolerated(0.19) benign(0.119) TCGA-AD-6889-01 16 58043955 58043955 C T USB1 Missense_Mutation p.R130C 0.46 deleterious(0) probably_damaging(0.993) TCGA-AD-6889-01 16 58589340 58589340 A - CNOT1 Frame_Shift_Del p.Q904Sfs*9 0.29 TCGA-AD-6889-01 16 58608605 58608605 G A CNOT1 Silent p.G629G 0.60 TCGA-AD-6889-01 16 66514659 66514659 G A BEAN1 Missense_Mutation p.G204D 0.39 tolerated(0.31) benign(0.054) TCGA-AD-6889-01 16 66919002 66919002 C T PDP2 Missense_Mutation p.A272V 0.56 tolerated(0.08) probably_damaging(0.913) TCGA-AD-6889-01 16 66919986 66919986 C T PDP2 3'UTR 0.47 TCGA-AD-6889-01 16 67241513 67241513 G A LRRC29 Missense_Mutation p.L223F 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-AD-6889-01 16 67397616 67397616 A G LRRC36 Missense_Mutation p.Q234R 0.38 deleterious(0) probably_damaging(0.993) TCGA-AD-6889-01 16 67576720 67576720 C T FAM65A Silent p.S697S 0.39 TCGA-AD-6889-01 16 67699995 67699995 C A ENKD1 Missense_Mutation p.G87C 0.39 tolerated(0.11) benign(0.395) TCGA-AD-6889-01 16 67918744 67918744 G - NRN1L 5'UTR 0.38 TCGA-AD-6889-01 16 67984300 67984300 G A SLC12A4 Silent p.G519G 0.51 TCGA-AD-6889-01 16 68011555 68011555 C A DPEP3 Splice_Site p.X336_splice 0.11 TCGA-AD-6889-01 16 68382293 68382293 C T PRMT7 Missense_Mutation p.R458W 0.43 deleterious(0.01) possibly_damaging(0.586) TCGA-AD-6889-01 16 684473 684473 G A C16orf13 3'UTR 0.45 TCGA-AD-6889-01 16 70305734 70305734 G A AARS Silent p.D207D 0.45 TCGA-AD-6889-01 16 70398467 70398467 G A DDX19A Silent p.Q136Q 0.55 TCGA-AD-6889-01 16 70405379 70405379 G T DDX19A Missense_Mutation p.G430C 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 16 70998735 70998735 C A HYDIN Missense_Mutation p.G1895V 0.38 probably_damaging(0.998) TCGA-AD-6889-01 16 71886135 71886136 - T ATXN1L 3'UTR 0.38 TCGA-AD-6889-01 16 74660349 74660349 A - RFWD3 Frame_Shift_Del p.F691Lfs*9 0.32 TCGA-AD-6889-01 16 74662492 74662492 A G RFWD3 Silent p.A609A 0.45 TCGA-AD-6889-01 16 746986 746986 C T FBXL16 Silent p.V140V 0.51 TCGA-AD-6889-01 16 75258738 75258738 G A CTRB1 Missense_Mutation p.V256M 0.50 tolerated(0.06) probably_damaging(0.947) TCGA-AD-6889-01 16 7568255 7568255 A G RBFOX1 Missense_Mutation p.H65R 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-AD-6889-01 16 80667007 80667007 C T CDYL2 Missense_Mutation p.R248Q 0.15 deleterious(0.01) probably_damaging(0.961) TCGA-AD-6889-01 16 81737546 81737546 C T CMIP Silent p.D649D 0.38 TCGA-AD-6889-01 16 823254 823254 G A MSLNL Missense_Mutation p.H672Y 0.61 benign(0.02) TCGA-AD-6889-01 16 83159066 83159066 C A CDH13 Missense_Mutation p.P195Q 0.43 deleterious(0) probably_damaging(0.916) TCGA-AD-6889-01 16 84070481 84070481 C T SLC38A8 Missense_Mutation p.G72R 0.60 deleterious(0) probably_damaging(0.969) TCGA-AD-6889-01 16 84256461 84256461 C T KCNG4 Missense_Mutation p.V308M 0.47 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 16 84270939 84270939 G A KCNG4 Silent p.D51D 0.42 TCGA-AD-6889-01 16 84402237 84402237 G A ATP2C2 Missense_Mutation p.V6I 0.48 tolerated_low_confidence(0.15) benign(0.004) TCGA-AD-6889-01 16 84485697 84485697 G T ATP2C2 Nonsense_Mutation p.G611* 0.50 TCGA-AD-6889-01 16 84495390 84495392 TCT - ATP2C2 In_Frame_Del p.F852del 0.43 TCGA-AD-6889-01 16 84514303 84514303 C - TLDC1 Frame_Shift_Del p.Q364Sfs*110 0.30 TCGA-AD-6889-01 16 84520304 84520304 C A TLDC1 Missense_Mutation p.E297D 0.42 deleterious(0.01) possibly_damaging(0.772) TCGA-AD-6889-01 16 84806268 84806268 C A USP10 Missense_Mutation p.P707H 0.45 deleterious(0) probably_damaging(0.976) TCGA-AD-6889-01 16 85100889 85100889 G A KIAA0513 Missense_Mutation p.R71H 0.52 deleterious(0.02) benign(0.032) TCGA-AD-6889-01 16 85711832 85711832 A G GINS2 Missense_Mutation p.S182P 0.47 deleterious(0.04) benign(0.006) TCGA-AD-6889-01 16 85838672 85838674 CCT - COX4I1 In_Frame_Del p.S69del 0.42 TCGA-AD-6889-01 16 87717818 87717818 A G JPH3 Missense_Mutation p.I411V 0.50 tolerated(0.24) benign(0.001) TCGA-AD-6889-01 16 88495317 88495317 C - ZNF469 Frame_Shift_Del p.L482Cfs*20 0.42 TCGA-AD-6889-01 16 88496440 88496440 G A ZNF469 Silent p.Q854Q 0.25 TCGA-AD-6889-01 16 88601370 88601370 G A ZFPM1 Missense_Mutation p.A1002T 0.38 deleterious(0) possibly_damaging(0.499) TCGA-AD-6889-01 16 89661836 89661836 A G CPNE7 Missense_Mutation p.E530G 0.50 deleterious(0.02) probably_damaging(0.995) TCGA-AD-6889-01 16 89715787 89715787 T G CHMP1A Missense_Mutation p.K75T 0.43 deleterious(0) possibly_damaging(0.88) TCGA-AD-6889-01 16 89777774 89777775 - C VPS9D1 Frame_Shift_Ins p.D265Gfs*127 0.35 TCGA-AD-6889-01 16 89871753 89871754 CA - FANCA Frame_Shift_Del p.C215Lfs*4 0.32 TCGA-AD-6889-01 16 90095794 90095795 - T C16orf3 5'UTR 0.34 TCGA-AD-6889-01 16 90109480 90109480 T C GAS8 Intron 0.58 TCGA-AD-6889-01 16 9010986 9010986 C - USP7 Frame_Shift_Del p.D250Mfs*9 0.33 TCGA-AD-6889-01 16 90160898 90160898 G A TUBB8P7 RNA 0.39 TCGA-AD-6889-01 16 9858585 9858585 C A GRIN2A Missense_Mutation p.G939V 0.41 tolerated(0.06) probably_damaging(1) TCGA-AD-6889-01 17 10209864 10209864 G A MYH13 Missense_Mutation p.T1793M 0.45 deleterious(0.01) benign(0.005) TCGA-AD-6889-01 17 10222492 10222492 C T MYH13 Missense_Mutation p.R1118H 0.60 deleterious(0.04) benign(0.016) TCGA-AD-6889-01 17 10399611 10399611 G A MYH1 Missense_Mutation p.R1638C 0.42 deleterious(0.02) possibly_damaging(0.883) TCGA-AD-6889-01 17 10417226 10417226 G A MYH1 Missense_Mutation p.T218I 0.49 deleterious(0.02) probably_damaging(0.992) TCGA-AD-6889-01 17 11572854 11572854 G A DNAH9 Silent p.G1032G 0.41 TCGA-AD-6889-01 17 14110263 14110263 C T COX10 Silent p.R355R 0.54 TCGA-AD-6889-01 17 14140041 14140041 A G CDRT15 Missense_Mutation p.L37P 0.37 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AD-6889-01 17 1650400 1650400 G A SERPINF2 Missense_Mutation p.C152Y 0.54 tolerated(1) benign(0.013) TCGA-AD-6889-01 17 17158229 17158229 C T COPS3 Missense_Mutation p.A323T 0.47 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 17 18034601 18034601 G A MYO15A Missense_Mutation p.V1363I 0.43 unknown(0) TCGA-AD-6889-01 17 18155082 18155082 C T FLII Missense_Mutation p.R432K 0.27 tolerated(0.09) benign(0.034) TCGA-AD-6889-01 17 19189092 19189092 G A EPN2 Missense_Mutation p.R252H 0.40 tolerated(0.07) benign(0.004) TCGA-AD-6889-01 17 19459346 19459346 G A SLC47A1 Missense_Mutation p.V298M 0.48 tolerated(0.05) benign(0.298) TCGA-AD-6889-01 17 2202267 2202267 G A SMG6 Nonsense_Mutation p.Q594* 0.15 TCGA-AD-6889-01 17 2202749 2202749 C T SMG6 Missense_Mutation p.R433Q 0.48 deleterious(0.04) possibly_damaging(0.477) TCGA-AD-6889-01 17 26856225 26856225 A C FOXN1 Missense_Mutation p.K271N 0.43 deleterious(0) probably_damaging(0.948) TCGA-AD-6889-01 17 26890503 26890503 C T PIGS Silent p.A138A 0.43 TCGA-AD-6889-01 17 26898372 26898372 C - PIGS Intron 0.36 TCGA-AD-6889-01 17 27001555 27001555 C T SUPT6H Missense_Mutation p.T90I 0.47 tolerated(0.08) unknown(0) TCGA-AD-6889-01 17 27228295 27228295 C T DHRS13 Missense_Mutation p.R132H 0.07 deleterious(0.03) benign(0.027) TCGA-AD-6889-01 17 27401398 27401398 C A TIAF1 5'UTR 0.39 TCGA-AD-6889-01 17 27870111 27870111 G T TAOK1 3'UTR 0.50 TCGA-AD-6889-01 17 28772834 28772834 G C CPD Missense_Mutation p.S890T 0.41 tolerated(0.49) benign(0.001) TCGA-AD-6889-01 17 28804466 28804466 C A GOSR1 Silent p.T5T 0.42 TCGA-AD-6889-01 17 28886710 28886710 T C TBC1D29 5'UTR 0.38 TCGA-AD-6889-01 17 29111376 29111376 G A CRLF3 Silent p.A386A 0.52 TCGA-AD-6889-01 17 29162357 29162357 A - ATAD5 Frame_Shift_Del p.K421Sfs*17 0.25 TCGA-AD-6889-01 17 30321002 30321002 A G SUZ12 Missense_Mutation p.H471R 0.42 deleterious(0) benign(0.3) TCGA-AD-6889-01 17 30529847 30529847 A T RHOT1 Missense_Mutation p.R420S 0.39 tolerated(0.29) benign(0.015) TCGA-AD-6889-01 17 30648026 30648026 C A RHBDL3 Silent p.A331A 0.43 TCGA-AD-6889-01 17 31048141 31048141 G A MYO1D Missense_Mutation p.R605C 0.37 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 17 32956191 32956191 C T TMEM132E Missense_Mutation p.R346W 0.10 deleterious(0) possibly_damaging(0.862) TCGA-AD-6889-01 17 33289311 33289311 C A ZNF830 Silent p.T242T 0.42 TCGA-AD-6889-01 17 33767741 33767741 C T SLFN13 Missense_Mutation p.R856Q 0.43 tolerated(0.09) probably_damaging(0.999) TCGA-AD-6889-01 17 35298137 35298137 C T LHX1 Missense_Mutation p.R210C 0.50 deleterious(0) probably_damaging(0.988) TCGA-AD-6889-01 17 36059119 36059119 C A HNF1B Missense_Mutation p.S539I 0.37 deleterious(0) probably_damaging(0.962) TCGA-AD-6889-01 17 36499057 36499057 G T GPR179 Missense_Mutation p.L206I 0.58 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 17 36499333 36499333 G A GPR179 Nonsense_Mutation p.Q114* 0.51 TCGA-AD-6889-01 17 37009975 37009976 - A RPL23 5'UTR 0.38 TCGA-AD-6889-01 17 37417765 37417765 G - FBXL20 Frame_Shift_Del p.P420Hfs*3 0.28 TCGA-AD-6889-01 17 38065264 38065264 C T GSDMB Missense_Mutation p.R203Q 0.39 tolerated(0.32) benign(0.009) TCGA-AD-6889-01 17 38412736 38412736 C - WIPF2 Frame_Shift_Del p.P10Hfs*20 0.34 TCGA-AD-6889-01 17 38498977 38498977 G - RARA Intron 0.28 TCGA-AD-6889-01 17 38978477 38978477 C T KRT10 Missense_Mutation p.G121S 0.42 tolerated(0.37) unknown(0) TCGA-AD-6889-01 17 3937343 3937343 G T ZZEF1 Missense_Mutation p.L2184M 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6889-01 17 39596892 39596892 G T KRT38 Silent p.A94A 0.37 TCGA-AD-6889-01 17 39767403 39767403 C T KRT16 Missense_Mutation p.R284H 0.50 tolerated(0.12) benign(0.198) TCGA-AD-6889-01 17 39915012 39915012 C A JUP Missense_Mutation p.Q536H 0.40 deleterious(0.04) probably_damaging(0.965) TCGA-AD-6889-01 17 40556696 40556696 G - PTRF 3'UTR 0.33 TCGA-AD-6889-01 17 40832446 40832446 C T CCR10 Missense_Mutation p.A72T 0.38 tolerated(0.59) benign(0.004) TCGA-AD-6889-01 17 40936555 40936555 C T WNK4 Silent p.S376S 0.33 TCGA-AD-6889-01 17 41477362 41477362 C T ARL4D Missense_Mutation p.R88C 0.37 deleterious(0) possibly_damaging(0.765) TCGA-AD-6889-01 17 42082049 42082049 G T NAGS Missense_Mutation p.M6I 0.43 tolerated_low_confidence(0.21) unknown(0) TCGA-AD-6889-01 17 4391253 4391253 G A SPNS3 3'UTR 0.40 TCGA-AD-6889-01 17 44408549 44408549 A - LRRC37A Frame_Shift_Del p.K1304Nfs*11 0.17 TCGA-AD-6889-01 17 4712401 4712401 C T PLD2 Silent p.A130A 0.34 TCGA-AD-6889-01 17 4719139 4719139 G - PLD2 Frame_Shift_Del p.G457Dfs*16 0.45 TCGA-AD-6889-01 17 47656587 47656587 G A NXPH3 Silent p.T228T 0.33 TCGA-AD-6889-01 17 48356598 48356598 C - TMEM92 Frame_Shift_Del p.P138Lfs*86 0.37 TCGA-AD-6889-01 17 48703575 48703575 C T CACNA1G Silent p.G2199G 0.47 TCGA-AD-6889-01 17 4883808 4883808 G - CAMTA2 Frame_Shift_Del p.P293Qfs*6 0.27 TCGA-AD-6889-01 17 49067978 49067978 T C SPAG9 Missense_Mutation p.Q817R 0.45 tolerated(0.26) benign(0.162) TCGA-AD-6889-01 17 49279405 49279405 G A MBTD1 Missense_Mutation p.T366I 0.44 deleterious(0.01) benign(0.025) TCGA-AD-6889-01 17 53471698 53471699 - A MMD Frame_Shift_Ins p.L238Ffs*7 0.36 TCGA-AD-6889-01 17 5366865 5366865 G A DHX33 Missense_Mutation p.T145I 0.38 deleterious(0.05) possibly_damaging(0.549) TCGA-AD-6889-01 17 5442787 5442787 G A NLRP1 Nonsense_Mutation p.R940* 0.36 TCGA-AD-6889-01 17 54921519 54921519 A - DGKE Frame_Shift_Del p.T204Qfs*6 0.29 TCGA-AD-6889-01 17 55123290 55123290 C T RNF126P1 RNA 0.47 TCGA-AD-6889-01 17 56326939 56326939 G A LPO Silent p.A152A 0.56 TCGA-AD-6889-01 17 56386200 56386200 C T BZRAP1 Missense_Mutation p.R1478H 0.09 tolerated(0.17) benign(0.127) TCGA-AD-6889-01 17 56435047 56435047 T C RNF43 Missense_Mutation p.H697R 0.46 deleterious_low_confidence(0.02) benign(0.006) TCGA-AD-6889-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.46 TCGA-AD-6889-01 17 59560365 59560365 C A TBX4 Missense_Mutation p.Q376K 0.38 tolerated(0.06) benign(0.159) TCGA-AD-6889-01 17 59934573 59934573 G A BRIP1 Silent p.G75G 0.34 TCGA-AD-6889-01 17 60455329 60455329 C T EFCAB3 Missense_Mutation p.P30L 0.33 tolerated_low_confidence(0.1) benign(0.086) TCGA-AD-6889-01 17 60749356 60749356 C T MRC2 Intron 0.29 TCGA-AD-6889-01 17 60759150 60759150 C T MRC2 Intron 0.40 TCGA-AD-6889-01 17 62029094 62029094 A G SCN4A Missense_Mutation p.I848T 0.38 tolerated(0.37) benign(0.077) TCGA-AD-6889-01 17 62271031 62271031 A T TEX2 Nonsense_Mutation p.Y688* 0.46 TCGA-AD-6889-01 17 63822338 63822338 T G CEP112 Intron 0.42 TCGA-AD-6889-01 17 6441358 6441358 C T PITPNM3 Missense_Mutation p.V23I 0.47 tolerated(1) benign(0.004) TCGA-AD-6889-01 17 64637546 64637546 T C PRKCA Missense_Mutation p.L121P 0.48 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 17 6503775 6503775 A G KIAA0753 Silent p.V671V 0.37 TCGA-AD-6889-01 17 65732026 65732026 A G NOL11 Missense_Mutation p.Y314C 0.28 deleterious(0) benign(0.123) TCGA-AD-6889-01 17 66267675 66267675 G A SLC16A6 Missense_Mutation p.A209V 0.44 tolerated(0.2) benign(0) TCGA-AD-6889-01 17 66864183 66864183 A - ABCA8 3'UTR 0.30 TCGA-AD-6889-01 17 6703371 6703371 C - TEKT1 Frame_Shift_Del p.G411Afs*18 0.32 TCGA-AD-6889-01 17 67189268 67189268 T C ABCA10 Missense_Mutation p.E588G 0.34 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 17 67247972 67247972 C T ABCA5 Missense_Mutation p.R1484Q 0.53 tolerated(0.28) benign(0.023) TCGA-AD-6889-01 17 6940177 6940177 G A SLC16A13 Missense_Mutation p.G111R 0.42 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 17 70119112 70119112 G - SOX9 Frame_Shift_Del 0.25 TCGA-AD-6889-01 17 71244527 71244527 C T C17orf80 3'UTR 0.62 TCGA-AD-6889-01 17 71412117 71412117 C A SDK2 Missense_Mutation p.G734V 0.40 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 17 72846745 72846745 G T GRIN2C Silent p.G425G 0.32 TCGA-AD-6889-01 17 72868187 72868187 A C FDXR Missense_Mutation p.F51V 0.46 deleterious(0) possibly_damaging(0.681) TCGA-AD-6889-01 17 72959143 72959143 G - HID1 Frame_Shift_Del p.L141Wfs*62 0.34 TCGA-AD-6889-01 17 7324274 7324274 C T SPEM1 Missense_Mutation p.R94W 0.43 deleterious(0.02) benign(0.003) TCGA-AD-6889-01 17 73658753 73658753 C T RECQL5 Missense_Mutation p.A193T 0.41 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 17 73835925 73835925 G T UNC13D Silent p.S350S 0.43 TCGA-AD-6889-01 17 73906781 73906782 - G FBF1 3'UTR 0.42 TCGA-AD-6889-01 17 73919309 73919309 C T FBF1 Missense_Mutation p.G446D 0.09 tolerated(0.37) benign(0.117) TCGA-AD-6889-01 17 73923610 73923610 C - FBF1 Frame_Shift_Del p.G120Vfs*31 0.32 TCGA-AD-6889-01 17 73975135 73975135 C A ACOX1 Missense_Mutation p.R7M 0.42 deleterious(0.03) possibly_damaging(0.547) TCGA-AD-6889-01 17 7417342 7417342 C - POLR2A Frame_Shift_Del p.K1922Sfs*59 0.34 TCGA-AD-6889-01 17 74309086 74309086 A G PRPSAP1 Silent p.I288I 0.36 TCGA-AD-6889-01 17 74465822 74465822 C T AANAT Nonsense_Mutation p.Q177* 0.52 TCGA-AD-6889-01 17 74868844 74868844 G A MGAT5B Missense_Mutation p.V5I 0.54 unknown(0) TCGA-AD-6889-01 17 74936499 74936499 G A MGAT5B Missense_Mutation p.G543S 0.51 tolerated(0.1) probably_damaging(0.98) TCGA-AD-6889-01 17 75316386 75316386 C T SEPT9 Intron 0.47 TCGA-AD-6889-01 17 76459108 76459108 C T DNAH17 Missense_Mutation p.V2984I 0.11 possibly_damaging(0.897) TCGA-AD-6889-01 17 76562722 76562722 A G DNAH17 Missense_Mutation p.C515R 0.40 possibly_damaging(0.87) TCGA-AD-6889-01 17 76672022 76672022 A - CYTH1 3'UTR 0.36 TCGA-AD-6889-01 17 7667330 7667330 C A DNAH2 Missense_Mutation p.L1054M 0.37 benign(0.222) TCGA-AD-6889-01 17 7682600 7682600 A G DNAH2 Missense_Mutation p.N1861D 0.45 probably_damaging(0.988) TCGA-AD-6889-01 17 77755902 77755902 G - CBX2 Intron 0.35 TCGA-AD-6889-01 17 77808541 77808541 G A CBX4 Silent p.D300D 0.43 TCGA-AD-6889-01 17 77987272 77987272 G A TBC1D16 Silent p.S25S 0.09 TCGA-AD-6889-01 17 79094434 79094434 A - AATK Frame_Shift_Del p.F1101Sfs*3 0.34 TCGA-AD-6889-01 17 79166131 79166131 C T AZI1 Missense_Mutation p.R870H 0.38 tolerated(0.36) benign(0.001) TCGA-AD-6889-01 17 79414762 79414763 - C RP11-1055B8.7 Frame_Shift_Ins p.S1291Qfs*8 0.37 TCGA-AD-6889-01 17 79477834 79477834 T C ACTG1 Missense_Mutation p.Y337C 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AD-6889-01 17 79495973 79495973 C A FSCN2 Missense_Mutation p.P139Q 0.58 deleterious(0) probably_damaging(0.964) TCGA-AD-6889-01 17 7984601 7984601 G - AC129492.6 3'UTR 0.30 TCGA-AD-6889-01 17 80008639 80008639 G A RFNG Silent p.G106G 0.38 TCGA-AD-6889-01 17 80047548 80047548 C T FASN Missense_Mutation p.C642Y 0.54 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 17 80159458 80159458 C T CCDC57 Silent p.Q121Q 0.41 TCGA-AD-6889-01 17 80332534 80332534 G A UTS2R Missense_Mutation p.V112I 0.46 tolerated(0.36) benign(0.021) TCGA-AD-6889-01 17 8157548 8157548 G A PFAS Silent p.L69L 0.43 TCGA-AD-6889-01 17 8439081 8439081 C T MYH10 Missense_Mutation p.G592R 0.40 probably_damaging(1) TCGA-AD-6889-01 17 8741937 8741937 G A PIK3R6 Nonsense_Mutation p.R45* 0.49 TCGA-AD-6889-01 17 9515717 9515717 C T WDR16 Missense_Mutation p.R316C 0.41 tolerated(0.08) benign(0.033) TCGA-AD-6889-01 17 9586185 9586185 A G USP43 Missense_Mutation p.E384G 0.43 tolerated(0.06) benign(0.048) TCGA-AD-6889-01 18 10696407 10696407 C T PIEZO2 Missense_Mutation p.G2207S 0.56 deleterious(0) possibly_damaging(0.809) TCGA-AD-6889-01 18 117224 117224 C T ROCK1P1 RNA 0.83 TCGA-AD-6889-01 18 13049656 13049656 C T CEP192 Missense_Mutation p.R956C 0.51 tolerated(0.3) benign(0) TCGA-AD-6889-01 18 13072834 13072834 A G CEP192 Missense_Mutation p.D1810G 0.43 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 18 13682064 13682064 C T FAM210A Missense_Mutation p.V5I 0.12 tolerated_low_confidence(0.32) benign(0.006) TCGA-AD-6889-01 18 14478596 14478596 G A CXADRP3 RNA 0.40 TCGA-AD-6889-01 18 19098010 19098010 G T GREB1L Missense_Mutation p.A1763S 0.20 tolerated(0.09) benign(0.393) TCGA-AD-6889-01 18 19154750 19154750 T - ESCO1 Frame_Shift_Del p.S19Vfs*17 0.27 TCGA-AD-6889-01 18 21396413 21396413 C T LAMA3 Silent p.C703C 0.38 TCGA-AD-6889-01 18 21474875 21474875 C T LAMA3 Silent p.C1822C 0.50 TCGA-AD-6889-01 18 214782 214782 A G THOC1 Silent p.S606S 0.45 TCGA-AD-6889-01 18 22804912 22804912 G A ZNF521 Silent p.C990C 0.47 TCGA-AD-6889-01 18 24722869 24722869 C A CHST9 Intron 0.43 TCGA-AD-6889-01 18 28588019 28588020 - T DSC3 Frame_Shift_Ins p.N542Kfs*2 0.10 TCGA-AD-6889-01 18 32888085 32888090 AAAAAC - ZNF271 RNA 0.18 TCGA-AD-6889-01 18 33289755 33289756 - A GALNT1 3'UTR 0.37 TCGA-AD-6889-01 18 33718822 33718822 G A ELP2 Silent p.L170L 0.44 TCGA-AD-6889-01 18 33848508 33848508 A G MOCOS Missense_Mutation p.M843V 0.42 tolerated(1) benign(0) TCGA-AD-6889-01 18 34174815 34174815 C T FHOD3 Silent p.N224N 0.41 TCGA-AD-6889-01 18 34844652 34844652 G - CELF4 Frame_Shift_Del p.Q412Sfs*26 0.42 TCGA-AD-6889-01 18 39542516 39542516 C T PIK3C3 Missense_Mutation p.A107V 0.38 tolerated(0.12) benign(0.126) TCGA-AD-6889-01 18 39573290 39573290 C - PIK3C3 Frame_Shift_Del p.Q259Rfs*7 0.16 TCGA-AD-6889-01 18 44146279 44146279 T G LOXHD1 Missense_Mutation p.Q793P 0.45 deleterious(0) benign(0.113) TCGA-AD-6889-01 18 45567213 45567213 A G ZBTB7C Missense_Mutation p.L89P 0.44 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 18 51809249 51809249 T C POLI Missense_Mutation p.I280T 0.37 deleterious(0) possibly_damaging(0.791) TCGA-AD-6889-01 18 54424480 54424480 G A WDR7 Missense_Mutation p.V886I 0.37 tolerated(0.09) probably_damaging(0.99) TCGA-AD-6889-01 18 54815010 54815010 C A BOD1L2 Missense_Mutation p.P156H 0.47 tolerated(0.06) possibly_damaging(0.808) TCGA-AD-6889-01 18 56651602 56651602 A - ZNF532 Frame_Shift_Del p.T1272Lfs*8 0.34 TCGA-AD-6889-01 18 59925179 59925179 A G KIAA1468 Splice_Site p.X633_splice 0.45 TCGA-AD-6889-01 18 60191494 60191494 C A ZCCHC2 Silent p.T279T 0.38 TCGA-AD-6889-01 18 61570285 61570285 G A SERPINB2 Missense_Mutation p.A332T 0.42 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 18 61620679 61620679 T - HMSD 5'UTR 0.31 TCGA-AD-6889-01 18 66378627 66378627 G A TMX3 Nonsense_Mutation p.R39* 0.13 TCGA-AD-6889-01 18 6873484 6873484 G A ARHGAP28 Missense_Mutation p.R185H 0.42 tolerated(0.58) benign(0.154) TCGA-AD-6889-01 18 70205472 70205472 C T CBLN2 Missense_Mutation p.G205D 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6889-01 18 7231207 7231207 G T LRRC30 Missense_Mutation p.R24I 0.36 tolerated(0.1) possibly_damaging(0.448) TCGA-AD-6889-01 18 724268 724268 A G YES1 3'UTR 0.53 TCGA-AD-6889-01 18 73130808 73130808 G A RP11-321M21.3 Missense_Mutation p.A68T 0.10 unknown(0) TCGA-AD-6889-01 18 74154217 74154217 G A ZNF516 Missense_Mutation p.A265V 0.49 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 18 77107793 77107793 G A ATP9B Silent p.A902A 0.37 TCGA-AD-6889-01 18 77917854 77917854 G A PARD6G Missense_Mutation p.R311C 0.64 tolerated_low_confidence(0.13) benign(0.416) TCGA-AD-6889-01 18 9256207 9256207 A - ANKRD12 Frame_Shift_Del p.K983Nfs*4 0.34 TCGA-AD-6889-01 19 10114779 10114779 C T COL5A3 Missense_Mutation p.A213T 0.41 unknown(0) TCGA-AD-6889-01 19 10221476 10221476 G A PPAN Missense_Mutation p.D379N 0.48 tolerated(0.42) benign(0.037) TCGA-AD-6889-01 19 10224767 10224767 C T PPAN-P2RY11 Silent p.L580L 0.50 TCGA-AD-6889-01 19 1037848 1037848 G - CNN2 Frame_Shift_Del p.E295Rfs*45 0.35 TCGA-AD-6889-01 19 10419286 10419286 G - ZGLP1 Frame_Shift_Del p.W25Gfs*107 0.28 TCGA-AD-6889-01 19 10428395 10428395 C T RAVER1 Missense_Mutation p.G699R 0.42 tolerated(0.14) possibly_damaging(0.839) TCGA-AD-6889-01 19 1047290 1047290 C T ABCA7 Silent p.G660G 0.55 TCGA-AD-6889-01 19 10568686 10568686 G T PDE4A Missense_Mutation p.G337W 0.15 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 19 11096048 11096048 C - SMARCA4 Frame_Shift_Del p.P109Rfs*194 0.22 TCGA-AD-6889-01 19 1114385 1114385 A G SBNO2 Missense_Mutation p.L641P 0.25 tolerated(0.29) benign(0.002) TCGA-AD-6889-01 19 11152049 11152049 C T SMARCA4 Missense_Mutation p.R1413C 0.48 probably_damaging(0.915) TCGA-AD-6889-01 19 11223988 11223988 C T LDLR Silent p.H407H 0.48 TCGA-AD-6889-01 19 11526762 11526762 G - RGL3 Frame_Shift_Del p.P163Lfs*93 0.16 TCGA-AD-6889-01 19 11594642 11594642 C T ZNF653 Missense_Mutation p.R568H 0.46 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 19 11918251 11918251 T C ZNF491 3'UTR 0.46 TCGA-AD-6889-01 19 11944607 11944607 G A ZNF440 3'UTR 0.37 TCGA-AD-6889-01 19 12461741 12461741 A - ZNF442 Frame_Shift_Del p.W220Gfs*34 0.32 TCGA-AD-6889-01 19 12772078 12772078 G A MAN2B1 Missense_Mutation p.A341V 0.14 deleterious(0.02) benign(0.184) TCGA-AD-6889-01 19 12781594 12781594 C T WDR83 Silent p.G155G 0.13 TCGA-AD-6889-01 19 14938266 14938266 G A OR7A5 Missense_Mutation p.A263V 0.49 deleterious_low_confidence(0.01) benign(0.314) TCGA-AD-6889-01 19 15072962 15072962 C T SLC1A6 Missense_Mutation p.A263T 0.45 tolerated(0.15) probably_damaging(0.994) TCGA-AD-6889-01 19 15079262 15079262 T C SLC1A6 Missense_Mutation p.Y134C 0.43 deleterious(0) possibly_damaging(0.579) TCGA-AD-6889-01 19 15852774 15852774 G A OR10H3 Missense_Mutation p.G191E 0.20 tolerated(0.07) benign(0.049) TCGA-AD-6889-01 19 15852775 15852775 G A OR10H3 Silent p.G191G 0.19 TCGA-AD-6889-01 19 15852777 15852777 G A OR10H3 Missense_Mutation p.S192N 0.20 tolerated(0.25) benign(0.001) TCGA-AD-6889-01 19 15918641 15918641 G A OR10H1 Silent p.S69S 0.53 TCGA-AD-6889-01 19 16060352 16060352 T C OR10H4 Missense_Mutation p.F179L 0.12 tolerated(0.09) benign(0.001) TCGA-AD-6889-01 19 16060456 16060456 A G OR10H4 Silent p.L213L 0.07 TCGA-AD-6889-01 19 16860457 16860457 C - NWD1 Frame_Shift_Del p.L337Wfs*14 0.23 TCGA-AD-6889-01 19 17013523 17013523 C T CPAMD8 Missense_Mutation p.D1588N 0.36 tolerated(0.11) probably_damaging(0.929) TCGA-AD-6889-01 19 17329386 17329386 A G USE1 Intron 0.53 TCGA-AD-6889-01 19 17392653 17392653 C T ANKLE1 5'UTR 0.40 TCGA-AD-6889-01 19 17441025 17441025 G A ANO8 Silent p.L394L 0.41 TCGA-AD-6889-01 19 17441688 17441688 C - ANO8 Frame_Shift_Del p.T315Rfs*45 0.42 TCGA-AD-6889-01 19 1827959 1827960 CA - REXO1 Nonsense_Mutation p.C276* 0.09 TCGA-AD-6889-01 19 18542165 18542165 C - SSBP4 Frame_Shift_Del p.G127Afs*13 0.43 TCGA-AD-6889-01 19 1877374 1877374 G A ABHD17A Missense_Mutation p.T304M 0.56 deleterious(0.02) possibly_damaging(0.618) TCGA-AD-6889-01 19 19378802 19378802 C T TM6SF2 Missense_Mutation p.R235Q 0.53 deleterious(0) probably_damaging(0.953) TCGA-AD-6889-01 19 19381069 19381069 C T TM6SF2 Missense_Mutation p.R105H 0.14 tolerated(0.08) possibly_damaging(0.847) TCGA-AD-6889-01 19 19655508 19655508 C T CILP2 Silent p.N718N 0.42 TCGA-AD-6889-01 19 20236230 20236230 C T CTC-260E6.2 RNA 0.52 TCGA-AD-6889-01 19 2042074 2042074 C T MKNK2 Intron 0.40 TCGA-AD-6889-01 19 20748546 20748546 C T ZNF737 5'Flank 0.58 TCGA-AD-6889-01 19 2109941 2109941 G T AP3D1 Missense_Mutation p.T1094N 0.45 tolerated(0.05) benign(0.021) TCGA-AD-6889-01 19 2234067 2234067 A - PLEKHJ1 Intron 0.32 TCGA-AD-6889-01 19 2249538 2249538 C T AMH Silent p.P69P 0.51 TCGA-AD-6889-01 19 22574128 22574128 T - ZNF98 3'UTR 0.24 TCGA-AD-6889-01 19 22575731 22575731 A T ZNF98 Missense_Mutation p.N102K 0.36 deleterious(0.01) benign(0.109) TCGA-AD-6889-01 19 22846818 22846818 A G ZNF492 Missense_Mutation p.D116G 0.43 tolerated(0.22) probably_damaging(0.971) TCGA-AD-6889-01 19 2805099 2805099 C - THOP1 Frame_Shift_Del p.L227Sfs*2 0.25 TCGA-AD-6889-01 19 2808336 2808336 C T THOP1 Missense_Mutation p.A450V 0.14 tolerated(0.13) probably_damaging(0.927) TCGA-AD-6889-01 19 33167313 33167313 G T RGS9BP Missense_Mutation p.Q48H 0.36 tolerated(0.06) benign(0.01) TCGA-AD-6889-01 19 33239417 33239417 A G TDRD12 Missense_Mutation p.Y159C 0.50 deleterious(0) probably_damaging(0.989) TCGA-AD-6889-01 19 33571974 33571974 T C GPATCH1 5'UTR 0.69 TCGA-AD-6889-01 19 33584417 33584417 G A GPATCH1 Silent p.T149T 0.35 TCGA-AD-6889-01 19 33701729 33701729 G - SLC7A10 Frame_Shift_Del p.I365Sfs*58 0.30 TCGA-AD-6889-01 19 34663461 34663461 C T LSM14A 5'Flank 0.53 TCGA-AD-6889-01 19 35250827 35250827 G T ZNF599 Silent p.T293T 0.39 TCGA-AD-6889-01 19 35504557 35504557 C T GRAMD1A Missense_Mutation p.P278S 0.37 tolerated(0.62) benign(0.008) TCGA-AD-6889-01 19 35551060 35551060 C A HPN Silent p.A147A 0.53 TCGA-AD-6889-01 19 3595782 3595782 G A TBXA2R Silent p.R312R 0.48 TCGA-AD-6889-01 19 36212225 36212225 T C KMT2B Missense_Mutation p.L659P 0.39 possibly_damaging(0.795) TCGA-AD-6889-01 19 36213368 36213368 G A KMT2B Silent p.R855R 0.38 TCGA-AD-6889-01 19 36321785 36321786 - G NPHS1 Frame_Shift_Ins p.S1186Vfs*10 0.37 TCGA-AD-6889-01 19 36431077 36431077 C A LRFN3 Silent p.P250P 0.43 TCGA-AD-6889-01 19 3643248 3643248 G A PIP5K1C Missense_Mutation p.R548W 0.16 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-AD-6889-01 19 36673443 36673443 G A ZNF565 Silent p.Y475Y 0.46 TCGA-AD-6889-01 19 37854451 37854451 G T HKR1 Missense_Mutation p.G585V 0.42 deleterious(0) probably_damaging(0.972) TCGA-AD-6889-01 19 38610084 38610084 C T SIPA1L3 Silent p.S810S 0.08 TCGA-AD-6889-01 19 38746874 38746874 G A PPP1R14A Missense_Mutation p.R36C 0.50 deleterious(0) probably_damaging(0.994) TCGA-AD-6889-01 19 38881004 38881005 - G SPRED3 Frame_Shift_Ins p.G24Rfs*63 0.31 TCGA-AD-6889-01 19 38939141 38939141 G A RYR1 Missense_Mutation p.R316H 0.35 probably_damaging(0.999) TCGA-AD-6889-01 19 38943504 38943504 C T RYR1 Silent p.P430P 0.39 TCGA-AD-6889-01 19 38990275 38990275 G T RYR1 Missense_Mutation p.G2343V 0.38 benign(0.154) TCGA-AD-6889-01 19 39008205 39008205 G A RYR1 Missense_Mutation p.A3298T 0.52 benign(0.031) TCGA-AD-6889-01 19 39076775 39076775 G A RYR1 Silent p.T4971T 0.49 TCGA-AD-6889-01 19 39589193 39589193 C T PAPL Missense_Mutation p.R73C 0.47 deleterious(0.03) possibly_damaging(0.462) TCGA-AD-6889-01 19 39915375 39915375 A C PLEKHG2 Missense_Mutation p.K1201T 0.37 deleterious_low_confidence(0.01) benign(0.055) TCGA-AD-6889-01 19 40320569 40320569 C T DYRK1B Silent p.R157R 0.46 TCGA-AD-6889-01 19 40325322 40325322 G A FBL Silent p.V309V 0.50 TCGA-AD-6889-01 19 40408285 40408285 G C FCGBP Missense_Mutation p.H1518Q 0.24 benign(0.281) TCGA-AD-6889-01 19 40540639 40540641 ATG - ZNF780B In_Frame_Del p.H709del 0.34 TCGA-AD-6889-01 19 40723094 40723094 C A TTC9B Missense_Mutation p.D204Y 0.53 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 19 40929395 40929395 G A SERTAD1 Missense_Mutation p.A20V 0.48 tolerated(0.15) benign(0.075) TCGA-AD-6889-01 19 40947706 40947706 G T SERTAD3 Silent p.T94T 0.53 TCGA-AD-6889-01 19 4099375 4099375 G A MAP2K2 Missense_Mutation p.S248L 0.36 deleterious(0) probably_damaging(0.958) TCGA-AD-6889-01 19 41000844 41000844 C T SPTBN4 Missense_Mutation p.R210W 0.41 deleterious(0) possibly_damaging(0.902) TCGA-AD-6889-01 19 41354283 41354283 G A CYP2A6 Silent p.G165G 0.38 TCGA-AD-6889-01 19 41860825 41860825 G A B9D2 Missense_Mutation p.P103L 0.36 deleterious(0) probably_damaging(0.909) TCGA-AD-6889-01 19 4216019 4216019 T C ANKRD24 Silent p.D414D 0.42 TCGA-AD-6889-01 19 42400459 42400459 C - ARHGEF1 Frame_Shift_Del p.L359Wfs*12 0.28 TCGA-AD-6889-01 19 42729206 42729206 C T ZNF526 Silent p.G217G 0.49 TCGA-AD-6889-01 19 42794441 42794441 C - CIC Frame_Shift_Del p.P509Hfs*14 0.35 TCGA-AD-6889-01 19 42858830 42858830 G A MEGF8 Missense_Mutation p.G1301S 0.45 tolerated(0.09) probably_damaging(0.973) TCGA-AD-6889-01 19 42873728 42873728 C T MEGF8 Silent p.N2162N 0.41 TCGA-AD-6889-01 19 4366524 4366524 G A SH3GL1 Missense_Mutation p.T54I 0.37 deleterious(0) possibly_damaging(0.642) TCGA-AD-6889-01 19 43683296 43683296 C T PSG5 Intron 0.42 TCGA-AD-6889-01 19 44112254 44112254 C T ZNF428 Missense_Mutation p.E28K 0.52 deleterious_low_confidence(0.04) benign(0.003) TCGA-AD-6889-01 19 44352079 44352079 T C ZNF283 Silent p.R442R 0.38 TCGA-AD-6889-01 19 4452472 4452472 C T UBXN6 Silent p.E110E 0.45 TCGA-AD-6889-01 19 44679832 44679832 T C ZNF226 Silent p.S139S 0.40 TCGA-AD-6889-01 19 45322334 45322334 C T BCAM Missense_Mutation p.A453V 0.35 tolerated(0.09) benign(0.023) TCGA-AD-6889-01 19 45918121 45918121 G A ERCC1 Missense_Mutation p.R234W 0.33 deleterious(0) possibly_damaging(0.776) TCGA-AD-6889-01 19 464279 464279 C T ODF3L2 Silent p.L145L 0.38 TCGA-AD-6889-01 19 46526055 46526055 C T PGLYRP1 Silent p.Q75Q 0.53 TCGA-AD-6889-01 19 46807169 46807169 T G HIF3A Missense_Mutation p.L14R 0.44 tolerated(1) probably_damaging(0.987) TCGA-AD-6889-01 19 46850393 46850393 C - PPP5C Frame_Shift_Del p.R16Gfs*10 0.28 TCGA-AD-6889-01 19 47290694 47290695 - G SLC1A5 Frame_Shift_Ins p.S177Qfs*33 0.25 TCGA-AD-6889-01 19 47424303 47424303 G T ARHGAP35 Nonsense_Mutation p.G791* 0.45 TCGA-AD-6889-01 19 47425387 47425387 T C ARHGAP35 Missense_Mutation p.V1152A 0.40 tolerated(0.62) benign(0.001) TCGA-AD-6889-01 19 47548499 47548500 - C NPAS1 Frame_Shift_Ins p.Q457Pfs*155 0.33 TCGA-AD-6889-01 19 47960277 47960277 G A SLC8A2 Missense_Mutation p.T417M 0.39 tolerated(0.05) benign(0.429) TCGA-AD-6889-01 19 48182688 48182689 - G GLTSCR1 Frame_Shift_Ins p.G90Rfs*9 0.32 TCGA-AD-6889-01 19 48342758 48342758 C A CRX Missense_Mutation p.P145H 0.31 deleterious(0.02) probably_damaging(0.94) TCGA-AD-6889-01 19 48922959 48922959 T C GRIN2D Missense_Mutation p.L660P 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-AD-6889-01 19 48973694 48973694 G A CTC-273B12.7 Missense_Mutation p.R19H 0.31 tolerated(0.18) benign(0.009) TCGA-AD-6889-01 19 49012756 49012756 G - LMTK3 Frame_Shift_Del p.L155Wfs*8 0.35 TCGA-AD-6889-01 19 49104572 49104572 G A FAM83E Missense_Mutation p.R411W 0.57 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 19 49404125 49404125 G A NUCB1 Silent p.V24V 0.42 TCGA-AD-6889-01 19 49458854 49458854 G - BAX Frame_Shift_Del 0.32 TCGA-AD-6889-01 19 49513771 49513771 G T RUVBL2 Silent p.G230G 0.48 TCGA-AD-6889-01 19 49637294 49637294 C T PPFIA3 Missense_Mutation p.R417W 0.34 deleterious(0) probably_damaging(0.984) TCGA-AD-6889-01 19 49657038 49657038 T - HRC Frame_Shift_Del p.K486Rfs*45 0.35 TCGA-AD-6889-01 19 49657603 49657603 G A HRC Nonsense_Mutation p.R298* 0.47 TCGA-AD-6889-01 19 49685966 49685966 C T TRPM4 Silent p.S465S 0.09 TCGA-AD-6889-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.54 TCGA-AD-6889-01 19 50087198 50087199 - T PRRG2 Frame_Shift_Ins p.G98Wfs*54 0.29 TCGA-AD-6889-01 19 50099771 50099771 G A PRR12 Missense_Mutation p.E727K 0.15 possibly_damaging(0.486) TCGA-AD-6889-01 19 50360301 50360303 AAG - PTOV1 In_Frame_Del p.K212del 0.37 TCGA-AD-6889-01 19 50374832 50374832 G A AKT1S1 Missense_Mutation p.A220V 0.40 tolerated(0.15) benign(0.115) TCGA-AD-6889-01 19 50812992 50812992 C A MYH14 Missense_Mutation p.P2019H 0.55 tolerated(0.06) unknown(0) TCGA-AD-6889-01 19 50939286 50939286 G A MYBPC2 Missense_Mutation p.V72M 0.49 deleterious(0.02) benign(0.171) TCGA-AD-6889-01 19 51021044 51021044 A C LRRC4B Silent p.G642G 0.38 TCGA-AD-6889-01 19 51192559 51192559 G - SHANK1 Intron 0.35 TCGA-AD-6889-01 19 5131361 5131361 C T KDM4B Silent p.Y530Y 0.38 TCGA-AD-6889-01 19 51411862 51411862 C T KLK4 Missense_Mutation p.V150I 0.57 tolerated(0.23) benign(0.393) TCGA-AD-6889-01 19 51830350 51830350 G A IGLON5 Silent p.T221T 0.53 TCGA-AD-6889-01 19 51885676 51885676 G T LIM2 Silent p.S149S 0.35 TCGA-AD-6889-01 19 52002932 52002932 G T SIGLEC12 Missense_Mutation p.L283M 0.39 deleterious(0.02) probably_damaging(0.949) TCGA-AD-6889-01 19 5243975 5243975 C T PTPRS Missense_Mutation p.A503T 0.61 deleterious(0.01) probably_damaging(0.997) TCGA-AD-6889-01 19 52619334 52619334 T C ZNF616 Silent p.A361A 0.38 TCGA-AD-6889-01 19 53057361 53057361 A G ZNF808 Missense_Mutation p.T398A 0.49 deleterious(0) benign(0.009) TCGA-AD-6889-01 19 53453423 53453423 T - ZNF816 Frame_Shift_Del p.K535Nfs*159 0.28 TCGA-AD-6889-01 19 53885051 53885051 G A ZNF525 Missense_Mutation p.G407R 0.38 deleterious(0.02) probably_damaging(0.922) TCGA-AD-6889-01 19 54759341 54759341 C T LILRB5 Missense_Mutation p.V254I 0.33 deleterious(0.02) benign(0.032) TCGA-AD-6889-01 19 54964805 54964805 C T LENG8 Silent p.S132S 0.50 TCGA-AD-6889-01 19 54967272 54967272 G A LENG8 Silent p.T384T 0.70 TCGA-AD-6889-01 19 54974755 54974755 G A LENG9 Silent p.C7C 0.60 TCGA-AD-6889-01 19 5587733 5587733 G A SAFB2 Missense_Mutation p.A895V 0.43 tolerated(0.21) benign(0.001) TCGA-AD-6889-01 19 55992598 55992598 C T ZNF628 Missense_Mutation p.A13V 0.52 tolerated(0.32) benign(0.035) TCGA-AD-6889-01 19 56243793 56243793 C T NLRP9 Silent p.P468P 0.62 TCGA-AD-6889-01 19 56249721 56249722 - A NLRP9 Frame_Shift_Ins p.S7Ffs*21 0.39 TCGA-AD-6889-01 19 5696269 5696269 G A LONP1 Silent p.D629D 0.47 TCGA-AD-6889-01 19 57133356 57133356 G A ZNF71 Missense_Mutation p.R234Q 0.45 deleterious(0) probably_damaging(0.996) TCGA-AD-6889-01 19 57133567 57133567 C A ZNF71 Silent p.G304G 0.48 TCGA-AD-6889-01 19 57175159 57175159 C T ZNF835 Missense_Mutation p.G470R 0.44 deleterious(0.03) probably_damaging(0.988) TCGA-AD-6889-01 19 57175727 57175727 G A ZNF835 Silent p.C280C 0.37 TCGA-AD-6889-01 19 57325892 57325892 A G PEG3 Silent p.N1306N 0.40 TCGA-AD-6889-01 19 57988861 57988861 G A ZNF772 5'UTR 0.35 TCGA-AD-6889-01 19 58005059 58005060 - T ZNF419 Frame_Shift_Ins p.T382Yfs*20 0.32 TCGA-AD-6889-01 19 58578858 58578858 C T ZNF135 Missense_Mutation p.R360W 0.44 deleterious(0.05) probably_damaging(0.993) TCGA-AD-6889-01 19 58639636 58639636 G A ZNF329 Missense_Mutation p.A412V 0.43 deleterious(0) possibly_damaging(0.839) TCGA-AD-6889-01 19 58772490 58772490 T C ZNF544 Missense_Mutation p.L173P 0.39 deleterious(0.04) possibly_damaging(0.894) TCGA-AD-6889-01 19 58928326 58928326 G A ZNF584 Silent p.G147G 0.38 TCGA-AD-6889-01 19 58946122 58946122 C T ZNF132 Missense_Mutation p.C230Y 0.40 tolerated(1) benign(0.007) TCGA-AD-6889-01 19 619238 619238 T A POLRMT Missense_Mutation p.E1042V 0.14 deleterious(0) probably_damaging(0.986) TCGA-AD-6889-01 19 6452375 6452375 G T SLC25A23 Missense_Mutation p.P340H 0.54 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 19 6746514 6746514 C T TRIP10 Missense_Mutation p.R346W 0.42 deleterious(0) probably_damaging(0.994) TCGA-AD-6889-01 19 7570993 7570993 G T C19orf45 Missense_Mutation p.Q383H 0.11 tolerated(0.09) benign(0.002) TCGA-AD-6889-01 19 7682254 7682254 T C CAMSAP3 Silent p.P1112P 0.32 TCGA-AD-6889-01 19 7686072 7686072 G A XAB2 Missense_Mutation p.R577W 0.50 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 19 7689214 7689214 C T XAB2 Missense_Mutation p.A314T 0.38 tolerated(0.37) benign(0) TCGA-AD-6889-01 19 7987438 7987438 C - SNAPC2 Frame_Shift_Del p.Q267Sfs*38 0.45 TCGA-AD-6889-01 19 8193949 8193949 G - FBN3 Frame_Shift_Del p.G754Afs*23 0.43 TCGA-AD-6889-01 19 8491523 8491523 G T MARCH2 Missense_Mutation p.E69D 0.37 tolerated(0.12) possibly_damaging(0.699) TCGA-AD-6889-01 19 8619618 8619618 C T MYO1F Missense_Mutation p.G51S 0.50 deleterious(0.02) probably_damaging(1) TCGA-AD-6889-01 19 8842179 8842179 C T OR2Z1 Silent p.C263C 0.43 TCGA-AD-6889-01 19 9048529 9048529 A G MUC16 Silent p.V11034V 0.49 TCGA-AD-6889-01 19 9049103 9049103 A - MUC16 Frame_Shift_Del p.F10843Sfs*11 0.37 TCGA-AD-6889-01 19 9677546 9677546 C T ZNF121 Silent p.T81T 0.34 TCGA-AD-6889-01 19 990951 990951 G A WDR18 Missense_Mutation p.G233R 0.44 deleterious(0) probably_damaging(0.992) TCGA-AD-6889-01 1 103488537 103488537 C A COL11A1 Nonsense_Mutation p.E336* 0.38 TCGA-AD-6889-01 1 10397496 10397496 C T KIF1B Silent p.N1063N 0.43 TCGA-AD-6889-01 1 107600473 107600473 C T PRMT6 3'UTR 0.43 TCGA-AD-6889-01 1 107691371 107691371 G A NTNG1 Silent p.P52P 0.56 TCGA-AD-6889-01 1 108771617 108771617 C T NBPF4 Missense_Mutation p.A529T 0.21 tolerated(0.05) benign(0) TCGA-AD-6889-01 1 109794938 109794938 G A CELSR2 Missense_Mutation p.R746H 0.52 deleterious(0.01) probably_damaging(0.994) TCGA-AD-6889-01 1 110883380 110883380 T C RBM15 Silent p.A451A 0.33 TCGA-AD-6889-01 1 1115550 1115550 A G TTLL10 Silent p.G112G 0.37 TCGA-AD-6889-01 1 111964219 111964219 G - OVGP1 Frame_Shift_Del p.L229Sfs*15 0.31 TCGA-AD-6889-01 1 113231497 113231497 C T MOV10 Intron 0.77 TCGA-AD-6889-01 1 113255605 113255605 C T PPM1J Missense_Mutation p.G164R 0.43 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 1 114680432 114680432 C A SYT6 Missense_Mutation p.K167N 0.41 deleterious(0) probably_damaging(0.952) TCGA-AD-6889-01 1 11580873 11580873 G A PTCHD2 Missense_Mutation p.S777N 0.45 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 1 116605411 116605411 C T SLC22A15 Silent p.S400S 0.08 TCGA-AD-6889-01 1 117061744 117061744 T C CD58 Intron 0.42 TCGA-AD-6889-01 1 117078661 117078662 - T CD58 Frame_Shift_Ins p.I185Nfs*6 0.32 TCGA-AD-6889-01 1 11893605 11893605 T - CLCN6 Frame_Shift_Del p.C430Vfs*73 0.40 TCGA-AD-6889-01 1 12202647 12202647 G A TNFRSF8 3'UTR 0.37 TCGA-AD-6889-01 1 1223319 1223319 G T SCNN1D Missense_Mutation p.D522Y 0.59 deleterious(0) probably_damaging(0.969) TCGA-AD-6889-01 1 12343303 12343303 A T VPS13D Missense_Mutation p.N1715I 0.17 benign(0.201) TCGA-AD-6889-01 1 1273499 1273499 C T DVL1 Silent p.P499P 0.47 TCGA-AD-6889-01 1 12779585 12779585 C T AADACL3 Missense_Mutation p.R36C 0.39 tolerated(0.29) benign(0.001) TCGA-AD-6889-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.61 TCGA-AD-6889-01 1 12954580 12954580 G A PRAMEF10 Missense_Mutation p.R235C 0.44 deleterious(0.02) benign(0.031) TCGA-AD-6889-01 1 1354699 1354699 C A ANKRD65 Missense_Mutation p.Q327H 0.12 tolerated(0.1) unknown(0) TCGA-AD-6889-01 1 144952160 144952160 G T PDE4DIP Intron 0.16 TCGA-AD-6889-01 1 145578475 145578475 C T PIAS3 Silent p.T146T 0.45 TCGA-AD-6889-01 1 145581220 145581220 G A PIAS3 Missense_Mutation p.A317T 0.47 deleterious(0.05) possibly_damaging(0.901) TCGA-AD-6889-01 1 1459280 1459280 G A ATAD3A Missense_Mutation p.R390H 0.41 tolerated(0.18) benign(0.006) TCGA-AD-6889-01 1 149895759 149895760 - GG SF3B4 Frame_Shift_Ins p.R354Pfs*27 0.40 TCGA-AD-6889-01 1 150445639 150445639 C T RPRD2 Silent p.D1405D 0.47 TCGA-AD-6889-01 1 150921647 150921647 C T SETDB1 Silent p.T439T 0.11 TCGA-AD-6889-01 1 150936004 150936004 A G SETDB1 Splice_Site p.X1153_splice 0.47 TCGA-AD-6889-01 1 151079640 151079640 A G GABPB2 Silent p.S288S 0.46 TCGA-AD-6889-01 1 151236495 151236495 C T PSMD4 Silent p.R91R 0.36 TCGA-AD-6889-01 1 151237951 151237951 C T PSMD4 Missense_Mutation p.P174S 0.41 deleterious(0.03) possibly_damaging(0.859) TCGA-AD-6889-01 1 152083693 152083693 C A TCHH Missense_Mutation p.R667M 0.35 unknown(0) TCGA-AD-6889-01 1 15287350 15287350 A G KAZN Missense_Mutation p.R133G 0.41 deleterious(0.01) possibly_damaging(0.587) TCGA-AD-6889-01 1 153746040 153746040 C - INTS3 3'UTR 0.28 TCGA-AD-6889-01 1 153750724 153750724 G A SLC27A3 Missense_Mutation p.G464R 0.38 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 1 153914686 153914686 G A DENND4B Missense_Mutation p.L263F 0.38 deleterious(0) possibly_damaging(0.644) TCGA-AD-6889-01 1 153945733 153945735 ACA - CREB3L4 In_Frame_Del p.N270del 0.31 TCGA-AD-6889-01 1 153995626 153995627 TG - NUP210L Frame_Shift_Del p.H1423Qfs*12 0.09 TCGA-AD-6889-01 1 15421378 15421378 G A KAZN Missense_Mutation p.R499H 0.44 deleterious(0) possibly_damaging(0.696) TCGA-AD-6889-01 1 154898943 154898943 C T PMVK Missense_Mutation p.R110Q 0.45 deleterious(0) probably_damaging(0.992) TCGA-AD-6889-01 1 154988002 154988002 G T ZBTB7B Missense_Mutation p.G323V 0.55 tolerated(0.07) benign(0.245) TCGA-AD-6889-01 1 155028558 155028558 C T ADAM15 Silent p.F249F 0.40 TCGA-AD-6889-01 1 155178629 155178629 T - MTX1 Frame_Shift_Del p.S12Rfs*106 0.33 TCGA-AD-6889-01 1 155258051 155258051 C T HCN3 Missense_Mutation p.R708W 0.67 tolerated_low_confidence(0.12) benign(0) TCGA-AD-6889-01 1 155264925 155264925 G T PKLR Missense_Mutation p.L226I 0.39 deleterious(0.01) probably_damaging(0.948) TCGA-AD-6889-01 1 155265244 155265244 G A PKLR Missense_Mutation p.T164I 0.50 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 1 155582059 155582059 G A MSTO1 Silent p.G255G 0.47 TCGA-AD-6889-01 1 155721661 155721661 C A GON4L Splice_Site p.X2157_splice 0.56 TCGA-AD-6889-01 1 155887376 155887381 GGGGCT - KIAA0907 In_Frame_Del p.Q450_P451del 0.26 TCGA-AD-6889-01 1 155988060 155988060 C T SSR2 Splice_Site p.X85_splice 0.49 TCGA-AD-6889-01 1 156142773 156142773 C A SEMA4A Missense_Mutation p.H431N 0.33 tolerated(0.12) possibly_damaging(0.613) TCGA-AD-6889-01 1 156213889 156213889 C T PAQR6 Silent p.G273G 0.44 TCGA-AD-6889-01 1 156220734 156220735 - C SMG5 Frame_Shift_Ins p.A961Gfs*3 0.26 TCGA-AD-6889-01 1 156236129 156236129 G T SMG5 Missense_Mutation p.P433Q 0.71 tolerated(0.6) benign(0.049) TCGA-AD-6889-01 1 156269097 156269098 - C VHLL 5'UTR 0.31 TCGA-AD-6889-01 1 1565023 1565023 C T MIB2 Silent p.C971C 0.42 TCGA-AD-6889-01 1 15655748 15655748 G A FHAD1 Intron 0.39 TCGA-AD-6889-01 1 156646681 156646681 G A NES Silent p.L126L 0.44 TCGA-AD-6889-01 1 156890677 156890677 A - LRRC71 Frame_Shift_Del p.K29Rfs*75 0.11 TCGA-AD-6889-01 1 159019310 159019310 C T IFI16 Intron 0.35 TCGA-AD-6889-01 1 159170779 159170779 G A CADM3 3'UTR 0.54 TCGA-AD-6889-01 1 159505289 159505289 C T OR10J5 Missense_Mutation p.G170D 0.07 tolerated(0.4) benign(0.004) TCGA-AD-6889-01 1 160263174 160263174 A G COPA Splice_Site p.X927_splice 0.36 TCGA-AD-6889-01 1 160389227 160389227 C T VANGL2 Missense_Mutation p.R210C 0.46 deleterious(0.05) possibly_damaging(0.828) TCGA-AD-6889-01 1 16065936 16065936 G A SLC25A34 3'UTR 0.36 TCGA-AD-6889-01 1 161071911 161071911 C T PFDN2 Missense_Mutation p.R72H 0.51 deleterious(0) probably_damaging(0.975) TCGA-AD-6889-01 1 161127443 161127443 G A UFC1 Missense_Mutation p.A98T 0.36 tolerated(0.16) possibly_damaging(0.564) TCGA-AD-6889-01 1 161130716 161130716 C A USP21 Missense_Mutation p.P96T 0.37 deleterious_low_confidence(0.02) benign(0.243) TCGA-AD-6889-01 1 161130861 161130861 T A USP21 Missense_Mutation p.L144H 0.38 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AD-6889-01 1 161928412 161928412 G A ATF6 Missense_Mutation p.V661I 0.32 tolerated_low_confidence(0.22) benign(0.116) TCGA-AD-6889-01 1 162312408 162312409 - T NOS1AP Intron 0.32 TCGA-AD-6889-01 1 162745477 162745477 G A DDR2 Missense_Mutation p.R631Q 0.47 tolerated(0.1) probably_damaging(1) TCGA-AD-6889-01 1 16345629 16345629 C T HSPB7 5'Flank 0.42 TCGA-AD-6889-01 1 165182967 165182967 G A LMX1A Missense_Mutation p.R194C 0.50 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 1 168013867 168013867 G T DCAF6 Nonsense_Mutation p.G630* 0.46 TCGA-AD-6889-01 1 168511286 168511286 G A XCL2 Missense_Mutation p.P41S 0.42 deleterious(0.05) probably_damaging(0.914) TCGA-AD-6889-01 1 168549360 168549360 C T XCL1 Missense_Mutation p.P41S 0.14 deleterious(0.05) probably_damaging(0.995) TCGA-AD-6889-01 1 16895569 16895569 G A NBPF1 Silent p.G871G 0.15 TCGA-AD-6889-01 1 169806193 169806193 C T C1orf112 Silent p.G555G 0.48 TCGA-AD-6889-01 1 170521402 170521402 A T GORAB Silent p.P328P 0.47 TCGA-AD-6889-01 1 171605018 171605018 G T MYOC 3'UTR 0.43 TCGA-AD-6889-01 1 171753253 171753253 G A METTL13 Missense_Mutation p.R176Q 0.53 tolerated(1) benign(0.001) TCGA-AD-6889-01 1 1721939 1721939 C T GNB1 Silent p.L198L 0.38 TCGA-AD-6889-01 1 17266539 17266540 - CC CROCC Frame_Shift_Ins p.Q588Pfs*15 0.32 TCGA-AD-6889-01 1 17282568 17282568 G A CROCC Missense_Mutation p.A1261T 0.47 possibly_damaging(0.755) TCGA-AD-6889-01 1 17282584 17282584 C T CROCC Missense_Mutation p.T1266I 0.44 benign(0.138) TCGA-AD-6889-01 1 173551047 173551047 A - SLC9C2 Frame_Shift_Del p.F247Lfs*5 0.10 TCGA-AD-6889-01 1 173780280 173780280 G A CENPL Missense_Mutation p.S53L 0.48 tolerated(0.15) benign(0.331) TCGA-AD-6889-01 1 174418283 174418283 A G GPR52 Missense_Mutation p.Q345R 0.39 tolerated_low_confidence(0.77) benign(0) TCGA-AD-6889-01 1 175048613 175048613 G A TNN Missense_Mutation p.R185H 0.48 tolerated(0.07) benign(0.003) TCGA-AD-6889-01 1 175372641 175372641 C A TNR Missense_Mutation p.C204F 0.41 deleterious(0) probably_damaging(0.934) TCGA-AD-6889-01 1 17575654 17575654 C T PADI3 Missense_Mutation p.R8C 0.39 tolerated(0.06) probably_damaging(0.983) TCGA-AD-6889-01 1 179013256 179013256 G A FAM20B Missense_Mutation p.A92T 0.43 tolerated(0.31) benign(0.002) TCGA-AD-6889-01 1 17914073 17914073 C - ARHGEF10L Frame_Shift_Del p.S54Afs*12 0.19 TCGA-AD-6889-01 1 17945893 17945893 C A ARHGEF10L Missense_Mutation p.P299T 0.42 deleterious(0.04) benign(0.11) TCGA-AD-6889-01 1 179815787 179815787 G A TOR1AIP2 Missense_Mutation p.R278W 0.41 deleterious(0) probably_damaging(0.978) TCGA-AD-6889-01 1 181708390 181708390 G A CACNA1E Splice_Site p.X1240_splice 0.40 TCGA-AD-6889-01 1 183209572 183209572 G T LAMC2 Intron 0.42 TCGA-AD-6889-01 1 183515466 183515466 G A SMG7 Silent p.P866P 0.45 TCGA-AD-6889-01 1 18811650 18811650 C T KLHDC7A 3'UTR 0.50 TCGA-AD-6889-01 1 190068140 190068140 C T BRINP3 Missense_Mutation p.A437T 0.44 tolerated(0.16) benign(0.001) TCGA-AD-6889-01 1 192780124 192780124 A G RGS2 Silent p.A96A 0.45 TCGA-AD-6889-01 1 1961597 1961598 - G GABRD Frame_Shift_Ins p.I415Hfs*14 0.21 TCGA-AD-6889-01 1 197087005 197087005 G A ASPM Nonsense_Mutation p.R1327* 0.41 TCGA-AD-6889-01 1 198725101 198725101 A - PTPRC Frame_Shift_Del p.N1239Tfs*17 0.39 TCGA-AD-6889-01 1 200956153 200956153 G A KIF21B Silent p.T1195T 0.44 TCGA-AD-6889-01 1 20249129 20249129 G T PLA2G2E Missense_Mutation p.P54T 0.34 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 1 203138165 203138165 C T MYBPH Missense_Mutation p.R429H 0.47 deleterious(0.02) benign(0.077) TCGA-AD-6889-01 1 203138404 203138404 A G MYBPH Missense_Mutation p.C403R 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-AD-6889-01 1 203667458 203667458 C T ATP2B4 Missense_Mutation p.R123C 0.41 tolerated(0.11) possibly_damaging(0.888) TCGA-AD-6889-01 1 203681211 203681211 T C ATP2B4 Missense_Mutation p.F719L 0.41 tolerated(0.1) benign(0.015) TCGA-AD-6889-01 1 204587829 204587829 G - LRRN2 Frame_Shift_Del p.P431Qfs*5 0.28 TCGA-AD-6889-01 1 204944502 204944502 C T NFASC Silent p.T554T 0.49 TCGA-AD-6889-01 1 205128706 205128706 C T DSTYK Missense_Mutation p.R736Q 0.50 deleterious(0.02) benign(0.327) TCGA-AD-6889-01 1 20518035 20518035 C T UBXN10 3'UTR 0.42 TCGA-AD-6889-01 1 20518886 20518886 A G UBXN10 3'UTR 0.29 TCGA-AD-6889-01 1 20519841 20519841 C G UBXN10 3'UTR 0.39 TCGA-AD-6889-01 1 205549826 205549827 - C MFSD4 Frame_Shift_Ins p.L158Pfs*4 0.32 TCGA-AD-6889-01 1 206610321 206610321 A G SRGAP2 Missense_Mutation p.Q435R 0.35 deleterious(0.04) benign(0.019) TCGA-AD-6889-01 1 20680810 20680810 A G VWA5B1 3'Flank 0.38 TCGA-AD-6889-01 1 207131815 207131815 C T FCAMR 3'UTR 0.16 TCGA-AD-6889-01 1 207131927 207131927 C T FCAMR Missense_Mutation p.M556I 0.39 tolerated(0.2) benign(0.007) TCGA-AD-6889-01 1 20827484 20827484 G A MUL1 Missense_Mutation p.A253V 0.39 tolerated(0.08) benign(0.055) TCGA-AD-6889-01 1 209785205 209785205 C T CAMK1G Silent p.G328G 0.39 TCGA-AD-6889-01 1 209788731 209788731 C T LAMB3 Missense_Mutation p.R1135Q 0.67 tolerated(0.24) benign(0.005) TCGA-AD-6889-01 1 209961733 209961733 A - IRF6 3'UTR 0.37 TCGA-AD-6889-01 1 21031010 21031010 G A KIF17 Silent p.R351R 0.34 TCGA-AD-6889-01 1 210577855 210577855 G A HHAT Silent p.T173T 0.36 TCGA-AD-6889-01 1 21181545 21181546 - T EIF4G3 Frame_Shift_Ins p.I1070Nfs*6 0.27 TCGA-AD-6889-01 1 212236291 212236291 G - DTL Frame_Shift_Del 0.30 TCGA-AD-6889-01 1 214170136 214170136 T C PROX1 Silent p.P86P 0.34 TCGA-AD-6889-01 1 216369958 216369958 C T USH2A Silent p.G1396G 0.42 TCGA-AD-6889-01 1 220101371 220101371 C T SLC30A10 Missense_Mutation p.A138T 0.50 tolerated(0.1) possibly_damaging(0.544) TCGA-AD-6889-01 1 220310239 220310239 G A IARS2 Missense_Mutation p.V679I 0.42 tolerated(1) benign(0.004) TCGA-AD-6889-01 1 221053229 221053229 C T HLX Silent p.Y10Y 0.59 TCGA-AD-6889-01 1 22169837 22169837 G A HSPG2 Missense_Mutation p.A2904V 0.56 benign(0.042) TCGA-AD-6889-01 1 2235467 2235467 C T SKI Missense_Mutation p.T467M 0.39 tolerated(0.15) benign(0.004) TCGA-AD-6889-01 1 225428437 225428437 C T DNAH14 Missense_Mutation p.P1794S 0.11 tolerated(0.71) benign(0.235) TCGA-AD-6889-01 1 226110104 226110104 C T RP4-559A3.7 Intron 0.53 TCGA-AD-6889-01 1 226127302 226127302 T C LEFTY2 Splice_Site p.X166_splice 0.45 TCGA-AD-6889-01 1 226411735 226411735 G A MIXL1 Missense_Mutation p.R118H 0.48 tolerated(0.06) probably_damaging(0.994) TCGA-AD-6889-01 1 227198699 227198699 T C CDC42BPA Intron 0.10 TCGA-AD-6889-01 1 227204674 227204674 G A CDC42BPA Missense_Mutation p.R1530C 0.13 deleterious(0) probably_damaging(0.982) TCGA-AD-6889-01 1 228246914 228246914 C T WNT3A Silent p.R269R 0.39 TCGA-AD-6889-01 1 228294496 228294496 G A MRPL55 Missense_Mutation p.R154C 0.58 deleterious(0) probably_damaging(0.949) TCGA-AD-6889-01 1 228346935 228346935 C T GJC2 3'UTR 0.39 TCGA-AD-6889-01 1 228404339 228404339 C T OBSCN Silent p.D771D 0.54 TCGA-AD-6889-01 1 228495135 228495135 G A OBSCN Silent p.T5080T 0.27 TCGA-AD-6889-01 1 2290099 2290099 T C MORN1 Silent p.S267S 0.44 TCGA-AD-6889-01 1 22925500 22925500 G A EPHA8 Missense_Mutation p.R783Q 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-AD-6889-01 1 229773770 229773770 C T URB2 Missense_Mutation p.A1137V 0.51 tolerated(0.3) benign(0.086) TCGA-AD-6889-01 1 234367337 234367337 C T SLC35F3 Missense_Mutation p.T153M 0.51 deleterious(0) possibly_damaging(0.853) TCGA-AD-6889-01 1 236306010 236306010 C T GPR137B Missense_Mutation p.P30S 0.43 tolerated(0.07) benign(0.022) TCGA-AD-6889-01 1 236433242 236433242 A G ERO1LB Missense_Mutation p.F52S 0.45 deleterious(0) probably_damaging(0.986) TCGA-AD-6889-01 1 237205814 237205814 G A RYR2 5'UTR 0.45 TCGA-AD-6889-01 1 237205827 237205827 C T RYR2 Silent p.A2A 0.43 TCGA-AD-6889-01 1 24080730 24080730 A - TCEB3 Frame_Shift_Del p.N587Tfs*32 0.33 TCGA-AD-6889-01 1 24119502 24119502 T - LYPLA2 Frame_Shift_Del p.L30Yfs*35 0.32 TCGA-AD-6889-01 1 2452249 2452249 G A PANK4 Silent p.S173S 0.39 TCGA-AD-6889-01 1 247051811 247051811 C A AHCTF1 Missense_Mutation p.W727L 0.48 deleterious(0.02) possibly_damaging(0.607) TCGA-AD-6889-01 1 247607351 247607351 A G NLRP3 Missense_Mutation p.H916R 0.41 deleterious(0.01) benign(0.197) TCGA-AD-6889-01 1 247751847 247751847 G A OR2G2 Missense_Mutation p.M62I 0.48 deleterious(0.01) benign(0.047) TCGA-AD-6889-01 1 247978773 247978773 T C OR14A16 Missense_Mutation p.N87D 0.40 tolerated(0.28) benign(0.001) TCGA-AD-6889-01 1 248737471 248737471 G A OR2T34 Silent p.D196D 0.17 TCGA-AD-6889-01 1 249144609 249144609 C T ZNF692 Missense_Mutation p.G459S 0.52 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 1 26189474 26189474 G A PAQR7 Missense_Mutation p.T286M 0.43 deleterious(0) probably_damaging(0.979) TCGA-AD-6889-01 1 26190076 26190076 C T PAQR7 Silent p.L85L 0.48 TCGA-AD-6889-01 1 26609137 26609137 C A UBXN11 Intron 0.43 TCGA-AD-6889-01 1 26664050 26664050 G A AIM1L Missense_Mutation p.S334F 0.23 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 1 26664051 26664051 A C AIM1L Missense_Mutation p.S334A 0.23 deleterious(0) probably_damaging(0.996) TCGA-AD-6889-01 1 27190758 27190758 G A SFN 3'UTR 0.46 TCGA-AD-6889-01 1 27268132 27268132 T G NUDC Missense_Mutation p.L115R 0.43 deleterious(0.02) probably_damaging(0.977) TCGA-AD-6889-01 1 27631661 27631661 C T WDTC1 Missense_Mutation p.R604W 0.09 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 1 27876986 27876986 G A AHDC1 Silent p.R547R 0.15 TCGA-AD-6889-01 1 28293175 28293175 G A XKR8 Missense_Mutation p.V218M 0.32 tolerated(0.07) possibly_damaging(0.457) TCGA-AD-6889-01 1 28864625 28864626 TG - RCC1 3'UTR 0.37 TCGA-AD-6889-01 1 28905029 28905029 A - TRNAU1AP 3'UTR 0.37 TCGA-AD-6889-01 1 32696723 32696723 A G EIF3I Missense_Mutation p.S302G 0.45 deleterious(0) probably_damaging(0.993) TCGA-AD-6889-01 1 33235942 33235942 G A KIAA1522 Missense_Mutation p.A388T 0.31 deleterious(0) unknown(0) TCGA-AD-6889-01 1 3413232 3413232 C T MEGF6 Silent p.T1243T 0.48 TCGA-AD-6889-01 1 34166229 34166229 A - CSMD2 Frame_Shift_Del p.F1167Lfs*6 0.41 TCGA-AD-6889-01 1 3440732 3440732 C T MEGF6 Missense_Mutation p.C187Y 0.46 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 1 35251604 35251604 C T GJB3 3'UTR 0.36 TCGA-AD-6889-01 1 35496340 35496340 T - ZMYM6 Intron 0.25 TCGA-AD-6889-01 1 36026545 36026545 C T NCDN Silent p.L265L 0.42 TCGA-AD-6889-01 1 36859630 36859630 C T LSM10 Missense_Mutation p.R34Q 0.53 tolerated(0.06) benign(0.408) TCGA-AD-6889-01 1 37941312 37941312 T G ZC3H12A Missense_Mutation p.L72R 0.45 deleterious(0) probably_damaging(0.965) TCGA-AD-6889-01 1 37949003 37949003 C - ZC3H12A Frame_Shift_Del p.P532Qfs*41 0.38 TCGA-AD-6889-01 1 38185675 38185675 A T EPHA10 Missense_Mutation p.F823Y 0.47 deleterious(0.03) probably_damaging(0.989) TCGA-AD-6889-01 1 39823310 39823310 C T MACF1 Silent p.S1834S 0.49 TCGA-AD-6889-01 1 40149765 40149766 - T HPCAL4 Frame_Shift_Ins p.N75Efs*32 0.33 TCGA-AD-6889-01 1 43201627 43201627 C T CLDN19 Missense_Mutation p.C183Y 0.39 deleterious(0) possibly_damaging(0.646) TCGA-AD-6889-01 1 43897463 43897463 G A SZT2 Missense_Mutation p.R1665H 0.44 tolerated(0.12) probably_damaging(0.958) TCGA-AD-6889-01 1 44364940 44364940 G A ST3GAL3 Intron 0.42 TCGA-AD-6889-01 1 44443768 44443768 G T ATP6V0B 3'UTR 0.45 TCGA-AD-6889-01 1 45268997 45268997 C - PLK3 Frame_Shift_Del p.N338Tfs*35 0.33 TCGA-AD-6889-01 1 45292204 45292204 C T PTCH2 Missense_Mutation p.V978I 0.43 tolerated(0.08) benign(0.05) TCGA-AD-6889-01 1 45480612 45480612 G A UROD Silent p.R292R 0.42 TCGA-AD-6889-01 1 45485783 45485783 G A ZSWIM5 Missense_Mutation p.R884C 0.43 deleterious(0) unknown(0) TCGA-AD-6889-01 1 47400685 47400685 G A CYP4A11 Silent p.A259A 0.39 TCGA-AD-6889-01 1 47614422 47614422 C T CYP4A22 Missense_Mutation p.R505C 0.44 tolerated(0.12) benign(0.022) TCGA-AD-6889-01 1 47685461 47685461 C T TAL1 Silent p.A309A 0.53 TCGA-AD-6889-01 1 52264076 52264076 G A NRD1 Missense_Mutation p.R885W 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 1 52385448 52385448 G A RAB3B 3'UTR 0.33 TCGA-AD-6889-01 1 53099277 53099277 G A FAM159A Missense_Mutation p.D38N 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-AD-6889-01 1 53237299 53237299 T C ZYG11B Silent p.L268L 0.11 TCGA-AD-6889-01 1 53544218 53544218 C T PODN Missense_Mutation p.R394W 0.33 deleterious(0.01) possibly_damaging(0.828) TCGA-AD-6889-01 1 54692739 54692739 T C SSBP3 3'UTR 0.50 TCGA-AD-6889-01 1 55136585 55136585 A G MROH7 Missense_Mutation p.K528E 0.42 tolerated(0.19) benign(0.009) TCGA-AD-6889-01 1 55473912 55473913 - C BSND Frame_Shift_Ins p.A195Gfs*6 0.31 TCGA-AD-6889-01 1 57341788 57341788 G A C8A Missense_Mutation p.G124S 0.39 tolerated(0.18) possibly_damaging(0.733) TCGA-AD-6889-01 1 57383434 57383434 C A C8A 3'UTR 0.42 TCGA-AD-6889-01 1 57406647 57406647 C T C8B Missense_Mutation p.V425I 0.46 tolerated(0.14) benign(0.396) TCGA-AD-6889-01 1 59148049 59148051 CTT - MYSM1 In_Frame_Del p.E222del 0.48 TCGA-AD-6889-01 1 60370669 60370669 G T CYP2J2 Silent p.A355A 0.65 TCGA-AD-6889-01 1 61548337 61548338 - C NFIA Intron 0.61 TCGA-AD-6889-01 1 62713165 62713165 G A KANK4 Silent p.C954C 0.16 TCGA-AD-6889-01 1 63881568 63881568 G A ALG6 Silent p.L309L 0.39 TCGA-AD-6889-01 1 6526133 6526133 G A TNFRSF25 Missense_Mutation p.A12V 0.56 tolerated(0.31) benign(0.015) TCGA-AD-6889-01 1 6585790 6585790 A - NOL9 3'UTR 0.35 TCGA-AD-6889-01 1 67833573 67833573 C T IL12RB2 Nonsense_Mutation p.Q442* 0.14 TCGA-AD-6889-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.29 TCGA-AD-6889-01 1 70740493 70740493 T C ANKRD13C Missense_Mutation p.H435R 0.40 tolerated(0.61) benign(0.066) TCGA-AD-6889-01 1 75037452 75037452 C T C1orf173 Silent p.S1314S 0.58 TCGA-AD-6889-01 1 75039163 75039163 T C C1orf173 Missense_Mutation p.N744S 0.38 tolerated(0.1) possibly_damaging(0.604) TCGA-AD-6889-01 1 7700514 7700514 G T CAMTA1 Missense_Mutation p.G189C 0.57 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 1 7887432 7887432 G A PER3 Missense_Mutation p.A807T 0.34 tolerated(0.53) benign(0.006) TCGA-AD-6889-01 1 84967643 84967643 G A GNG5 Missense_Mutation p.A31V 0.43 tolerated(0.06) benign(0.367) TCGA-AD-6889-01 1 84991422 84991422 C T SPATA1 RNA 0.39 TCGA-AD-6889-01 1 85424217 85424217 T C MCOLN2 Missense_Mutation p.N136D 0.40 tolerated(1) benign(0.001) TCGA-AD-6889-01 1 8716211 8716211 T - RERE Frame_Shift_Del p.N49Ifs*46 0.29 TCGA-AD-6889-01 1 874781 874782 - C SAMD11 Frame_Shift_Ins p.S218Qfs*4 0.32 TCGA-AD-6889-01 1 87810502 87810502 C T LMO4 3'UTR 0.09 TCGA-AD-6889-01 1 90058708 90058708 C T LRRC8B 3'UTR 0.33 TCGA-AD-6889-01 1 906123 906123 G A PLEKHN1 Missense_Mutation p.A157T 0.41 tolerated(0.09) possibly_damaging(0.697) TCGA-AD-6889-01 1 91182225 91182225 G A BARHL2 Silent p.N176N 0.49 TCGA-AD-6889-01 1 914497 914497 G A C1orf170 Missense_Mutation p.P544L 0.08 tolerated(0.29) probably_damaging(0.998) TCGA-AD-6889-01 1 914587 914587 G A C1orf170 Missense_Mutation p.A514V 0.32 tolerated(0.06) possibly_damaging(0.782) TCGA-AD-6889-01 1 92712011 92712011 T A GLMN 3'UTR 0.07 TCGA-AD-6889-01 1 93584949 93584949 C A MTF2 Missense_Mutation p.P263Q 0.43 deleterious(0) benign(0.089) TCGA-AD-6889-01 1 9416315 9416315 C - SPSB1 Frame_Shift_Del p.L124Cfs*56 0.34 TCGA-AD-6889-01 1 94337719 94337719 T - DNTTIP2 Frame_Shift_Del p.N659Mfs*6 0.30 TCGA-AD-6889-01 1 9640224 9640225 - T SLC25A33 Frame_Shift_Ins p.G235Wfs*10 0.41 TCGA-AD-6889-01 1 9791919 9791919 G A CLSTN1 Silent p.H821H 0.46 TCGA-AD-6889-01 1 98186257 98186257 T G DPYD Intron 0.29 TCGA-AD-6889-01 1 983209 983209 G T AGRN Missense_Mutation p.V1229L 0.35 deleterious(0.04) benign(0.103) TCGA-AD-6889-01 1 99470111 99470111 G C LPPR5 Missense_Mutation p.N39K 0.42 deleterious(0.01) benign(0.231) TCGA-AD-6889-01 20 13550202 13550202 C T TASP1 Missense_Mutation p.A174T 0.30 deleterious(0) probably_damaging(0.991) TCGA-AD-6889-01 20 18724849 18724849 G A DTD1 Missense_Mutation p.A195T 0.47 tolerated_low_confidence(0.06) benign(0.012) TCGA-AD-6889-01 20 2377210 2377210 C T TGM6 Silent p.S161S 0.50 TCGA-AD-6889-01 20 2377254 2377254 G A TGM6 Missense_Mutation p.G176D 0.38 deleterious(0.01) probably_damaging(0.932) TCGA-AD-6889-01 20 25459618 25459618 G T NINL Nonsense_Mutation p.C714* 0.33 TCGA-AD-6889-01 20 25666239 25666239 C A ZNF337 Nonsense_Mutation p.G72* 0.45 TCGA-AD-6889-01 20 25755929 25755929 C A FAM182B Missense_Mutation p.W9C 0.27 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-AD-6889-01 20 2779088 2779088 G A CPXM1 Missense_Mutation p.R146W 0.39 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 20 306806 306806 C T SOX12 Silent p.L80L 0.41 TCGA-AD-6889-01 20 3102655 3102655 C T UBOX5 Silent p.L210L 0.43 TCGA-AD-6889-01 20 31611230 31611230 G A BPIFB2 3'UTR 0.39 TCGA-AD-6889-01 20 31619502 31619502 C T BPIFB6 Nonsense_Mutation p.R17* 0.53 TCGA-AD-6889-01 20 3215228 3215228 G A SLC4A11 Missense_Mutation p.H136Y 0.49 tolerated(0.58) benign(0.017) TCGA-AD-6889-01 20 32224503 32224504 - A CBFA2T2 Nonsense_Mutation p.W438* 0.19 TCGA-AD-6889-01 20 32224504 32224504 G A CBFA2T2 Nonsense_Mutation p.W438* 0.40 TCGA-AD-6889-01 20 32245750 32245750 G - NECAB3 Frame_Shift_Del p.P387Qfs*6 0.35 TCGA-AD-6889-01 20 32264598 32264598 G A E2F1 Silent p.G418G 0.31 TCGA-AD-6889-01 20 32664597 32664597 G A RALY Missense_Mutation p.A212T 0.47 tolerated(0.11) benign(0.044) TCGA-AD-6889-01 20 32856864 32856864 G A ASIP Missense_Mutation p.R97H 0.76 tolerated(0.59) probably_damaging(0.991) TCGA-AD-6889-01 20 32883267 32883267 A T AHCY Silent p.A51A 0.50 TCGA-AD-6889-01 20 3354710 3354710 A - C20orf194 Frame_Shift_Del p.F199Lfs*3 0.28 TCGA-AD-6889-01 20 34025559 34025559 C G GDF5 Missense_Mutation p.R50S 0.46 deleterious_low_confidence(0) benign(0.01) TCGA-AD-6889-01 20 34064421 34064421 G T CEP250 Splice_Site p.X621_splice 0.24 TCGA-AD-6889-01 20 34144037 34144037 G A ERGIC3 Missense_Mutation p.G297R 0.58 deleterious(0) probably_damaging(0.978) TCGA-AD-6889-01 20 35540921 35540921 C T SAMHD1 Missense_Mutation p.R366H 0.39 deleterious(0) possibly_damaging(0.904) TCGA-AD-6889-01 20 37356293 37356293 C T SLC32A1 Missense_Mutation p.R197C 0.42 deleterious(0.01) probably_damaging(0.98) TCGA-AD-6889-01 20 3802796 3802796 G T AP5S1 Missense_Mutation p.R11M 0.59 tolerated(0.12) possibly_damaging(0.614) TCGA-AD-6889-01 20 39981287 39981287 A - LPIN3 Frame_Shift_Del p.N470Tfs*10 0.31 TCGA-AD-6889-01 20 40744685 40744685 G A PTPRT Intron 0.41 TCGA-AD-6889-01 20 42907913 42907913 C G GDAP1L1 Nonsense_Mutation p.Y359* 0.39 TCGA-AD-6889-01 20 42908163 42908164 GA - GDAP1L1 3'UTR 0.35 TCGA-AD-6889-01 20 43090735 43090738 CAGG - C20orf62 Frame_Shift_Del p.S102Qfs*28 0.14 TCGA-AD-6889-01 20 43384834 43384834 G A RIMS4 Missense_Mutation p.R252W 0.47 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AD-6889-01 20 44006234 44006234 C T TP53TG5 Missense_Mutation p.R23Q 0.47 tolerated(1) benign(0) TCGA-AD-6889-01 20 44108503 44108503 G - WFDC2 Intron 0.29 TCGA-AD-6889-01 20 44685075 44685075 G - SLC12A5 Frame_Shift_Del p.E1019Kfs*40 0.32 TCGA-AD-6889-01 20 44803286 44803286 G A CDH22 Silent p.A782A 0.44 TCGA-AD-6889-01 20 45016004 45016004 G A ELMO2 Silent p.D166D 0.48 TCGA-AD-6889-01 20 45174333 45174333 C T OCSTAMP Missense_Mutation p.R227Q 0.44 tolerated(0.19) benign(0.022) TCGA-AD-6889-01 20 4707293 4707293 T C PRND 3'UTR 0.38 TCGA-AD-6889-01 20 4708755 4708755 C A PRND 3'UTR 0.44 TCGA-AD-6889-01 20 47872451 47872451 T - ZNFX1 Frame_Shift_Del p.R900Efs*2 0.33 TCGA-AD-6889-01 20 47877068 47877068 A G ZNFX1 Missense_Mutation p.L783P 0.15 deleterious(0.02) probably_damaging(0.946) TCGA-AD-6889-01 20 48129758 48129758 G - PTGIS Frame_Shift_Del p.F356Sfs*34 0.36 TCGA-AD-6889-01 20 50701243 50701243 G A ZFP64 Silent p.C597C 0.48 TCGA-AD-6889-01 20 50701379 50701379 G A ZFP64 Missense_Mutation p.T552M 0.35 tolerated(0.22) benign(0.105) TCGA-AD-6889-01 20 52193226 52193226 C - ZNF217 Frame_Shift_Del p.A693Lfs*10 0.34 TCGA-AD-6889-01 20 52774698 52774698 G A CYP24A1 Missense_Mutation p.T388M 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-AD-6889-01 20 55982767 55982767 G A RBM38 Silent p.S195S 0.48 TCGA-AD-6889-01 20 57429207 57429207 C T GNAS Missense_Mutation p.T296M 0.41 deleterious_low_confidence(0.05) unknown(0) TCGA-AD-6889-01 20 57766178 57766178 T C ZNF831 Missense_Mutation p.L35P 0.46 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 20 6022768 6022768 G T LRRN4 Missense_Mutation p.P375T 0.48 tolerated(0.23) benign(0.218) TCGA-AD-6889-01 20 60511828 60511828 C - CDH4 Frame_Shift_Del p.Y862Mfs*22 0.38 TCGA-AD-6889-01 20 60879541 60879542 TG - ADRM1 Frame_Shift_Del p.C80* 0.10 TCGA-AD-6889-01 20 60897449 60897449 C T LAMA5 Silent p.P2074P 0.47 TCGA-AD-6889-01 20 60989596 60989596 G A RBBP8NL Missense_Mutation p.R271W 0.45 deleterious(0) probably_damaging(0.928) TCGA-AD-6889-01 20 61299153 61299153 G A SLCO4A1 Missense_Mutation p.C510Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 20 61488887 61488887 G A TCFL5 Silent p.G366G 0.51 TCGA-AD-6889-01 20 61574894 61574894 G A GID8 Silent p.A121A 0.50 TCGA-AD-6889-01 20 61917759 61917760 - T ARFGAP1 Frame_Shift_Ins p.S303Ffs*42 0.40 TCGA-AD-6889-01 20 62051000 62051000 G T KCNQ2 Missense_Mutation p.L425M 0.08 tolerated(0.09) benign(0.365) TCGA-AD-6889-01 20 62103792 62103792 C T KCNQ2 Missense_Mutation p.G9S 0.30 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-AD-6889-01 20 62378531 62378531 C A ZBTB46 Missense_Mutation p.G508C 0.36 deleterious(0.04) probably_damaging(0.964) TCGA-AD-6889-01 20 62421432 62421432 G A ZBTB46 Missense_Mutation p.R227C 0.52 tolerated(0.06) benign(0.006) TCGA-AD-6889-01 20 9453962 9453962 A - PLCB4 Frame_Shift_Del p.V1139Sfs*6 0.30 TCGA-AD-6889-01 20 9525016 9525016 C A PAK7 Missense_Mutation p.E623D 0.45 deleterious(0.01) probably_damaging(0.982) TCGA-AD-6889-01 21 17199433 17199433 C T USP25 Missense_Mutation p.P535L 0.37 deleterious(0) benign(0.306) TCGA-AD-6889-01 21 17203797 17203797 T C USP25 Silent p.D614D 0.39 TCGA-AD-6889-01 21 17205756 17205756 C T USP25 Nonsense_Mutation p.R695* 0.36 TCGA-AD-6889-01 21 27141332 27141332 A G GABPA Missense_Mutation p.D385G 0.43 deleterious(0) possibly_damaging(0.514) TCGA-AD-6889-01 21 28338289 28338289 C T ADAMTS5 Missense_Mutation p.R141H 0.46 tolerated(0.12) possibly_damaging(0.848) TCGA-AD-6889-01 21 30426572 30426572 A - USP16 3'UTR 0.25 TCGA-AD-6889-01 21 32638803 32638803 C T TIAM1 Silent p.T162T 0.45 TCGA-AD-6889-01 21 33068954 33068954 G - SCAF4 Frame_Shift_Del p.P296Lfs*50 0.42 TCGA-AD-6889-01 21 33679113 33679113 G T MRAP Intron 0.52 TCGA-AD-6889-01 21 33975424 33975424 A C C21orf59 Intron 0.42 TCGA-AD-6889-01 21 35474332 35474332 G A SLC5A3 3'UTR 0.41 TCGA-AD-6889-01 21 36231807 36231807 T C RUNX1 Missense_Mutation p.I193V 0.42 deleterious(0) benign(0.175) TCGA-AD-6889-01 21 37617519 37617519 C T DOPEY2 Nonsense_Mutation p.R1081* 0.38 TCGA-AD-6889-01 21 38441909 38441909 C A PIGP Missense_Mutation p.W57L 0.07 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 21 38592591 38592591 G A DSCR3 3'Flank 0.31 TCGA-AD-6889-01 21 42779933 42779933 C T MX2 Missense_Mutation p.L641F 0.54 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 21 43171279 43171279 C T RIPK4 Missense_Mutation p.D201N 0.40 tolerated(0.23) probably_damaging(0.949) TCGA-AD-6889-01 21 43504322 43504322 G - UMODL1 Frame_Shift_Del p.R152Afs*26 0.37 TCGA-AD-6889-01 21 43523753 43523753 G A C21orf128 Silent p.D160D 0.53 TCGA-AD-6889-01 21 43802181 43802181 C T TMPRSS3 Silent p.T315T 0.42 TCGA-AD-6889-01 21 44323655 44323655 T A NDUFV3 Missense_Mutation p.V178E 0.47 tolerated(0.15) benign(0.083) TCGA-AD-6889-01 21 44513132 44513132 A T U2AF1 3'UTR 0.46 TCGA-AD-6889-01 21 45499494 45499494 A - TRAPPC10 Frame_Shift_Del p.N508Tfs*38 0.32 TCGA-AD-6889-01 21 45656840 45656840 G - ICOSLG Frame_Shift_Del p.Q106Rfs*11 0.40 TCGA-AD-6889-01 21 46925342 46925343 - G COL18A1 Frame_Shift_Ins 0.39 TCGA-AD-6889-01 21 46950797 46950797 C A SLC19A1 Missense_Mutation p.Q346H 0.10 deleterious(0.05) probably_damaging(0.954) TCGA-AD-6889-01 21 47330915 47330915 G A PCBP3 Missense_Mutation p.V191I 0.61 tolerated(0.35) benign(0.212) TCGA-AD-6889-01 21 47422174 47422174 G - COL6A1 Frame_Shift_Del p.E705Rfs*98 0.60 TCGA-AD-6889-01 21 47532162 47532162 C T COL6A2 Missense_Mutation p.R129C 0.46 deleterious(0.01) probably_damaging(0.943) TCGA-AD-6889-01 21 47845806 47845806 C T PCNT Missense_Mutation p.A2414V 0.35 benign(0) TCGA-AD-6889-01 22 17072754 17072754 A G CCT8L2 Silent p.C229C 0.45 TCGA-AD-6889-01 22 17447062 17447062 G A GAB4 Missense_Mutation p.H406Y 0.27 tolerated(0.34) benign(0.053) TCGA-AD-6889-01 22 17590422 17590422 C T IL17RA Silent p.P771P 0.42 TCGA-AD-6889-01 22 18609253 18609253 G A TUBA8 Missense_Mutation p.A170T 0.37 tolerated_low_confidence(0.24) probably_damaging(0.996) TCGA-AD-6889-01 22 19511720 19511720 C - CLDN5 Frame_Shift_Del p.G105Vfs*2 0.32 TCGA-AD-6889-01 22 19511943 19511944 - G CLDN5 Frame_Shift_Ins p.G31Rfs*307 0.43 TCGA-AD-6889-01 22 20457894 20457894 A G RIMBP3 Silent p.C1136C 0.14 TCGA-AD-6889-01 22 21088713 21088713 G - PI4KA Frame_Shift_Del p.E1291Kfs*2 0.37 TCGA-AD-6889-01 22 21799658 21799659 - C HIC2 Frame_Shift_Ins p.R161Pfs*40 0.52 TCGA-AD-6889-01 22 21990948 21990948 G T CCDC116 Silent p.L477L 0.44 TCGA-AD-6889-01 22 24583313 24583313 C A SUSD2 Missense_Mutation p.L596I 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-AD-6889-01 22 24615946 24615946 C A GGT5 Missense_Mutation p.G586C 0.47 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 22 26860581 26860581 C T HPS4 Missense_Mutation p.A339T 0.42 tolerated(0.6) benign(0.003) TCGA-AD-6889-01 22 26884164 26884165 GT - SRRD Frame_Shift_Del p.C143Lfs*13 0.36 TCGA-AD-6889-01 22 26895205 26895205 G A TFIP11 Silent p.D398D 0.34 TCGA-AD-6889-01 22 28192808 28192808 C T MN1 Missense_Mutation p.D1242N 0.44 probably_damaging(0.993) TCGA-AD-6889-01 22 28392224 28392224 C T TTC28 Missense_Mutation p.V1715I 0.50 tolerated(0.15) benign(0.013) TCGA-AD-6889-01 22 28395159 28395159 C A TTC28 Missense_Mutation p.M1496I 0.30 tolerated(0.18) probably_damaging(0.93) TCGA-AD-6889-01 22 29439321 29439321 C T ZNRF3 Missense_Mutation p.P179L 0.48 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 22 29444463 29444463 T A ZNRF3 Nonsense_Mutation p.C333* 0.43 TCGA-AD-6889-01 22 29908111 29908111 C T THOC5 Missense_Mutation p.A566T 0.44 tolerated(0.23) benign(0.015) TCGA-AD-6889-01 22 30221155 30221155 T C ASCC2 Missense_Mutation p.E111G 0.49 tolerated(0.12) benign(0.101) TCGA-AD-6889-01 22 30887655 30887655 C A SEC14L4 Missense_Mutation p.S329I 0.09 deleterious(0.01) benign(0.167) TCGA-AD-6889-01 22 30887895 30887895 C T SEC14L4 Silent p.E279E 0.26 TCGA-AD-6889-01 22 31534738 31534738 G T PLA2G3 Missense_Mutation p.P188T 0.34 deleterious(0.01) probably_damaging(0.95) TCGA-AD-6889-01 22 31836695 31836695 C T EIF4ENIF1 Missense_Mutation p.R904H 0.43 deleterious(0.02) probably_damaging(0.991) TCGA-AD-6889-01 22 31838071 31838071 G A EIF4ENIF1 Missense_Mutation p.A747V 0.42 tolerated(0.62) benign(0.054) TCGA-AD-6889-01 22 32002407 32002407 A G SFI1 Missense_Mutation p.I716M 0.70 tolerated(0.17) benign(0.011) TCGA-AD-6889-01 22 32072978 32072978 G T PRR14L 3'Flank 0.38 TCGA-AD-6889-01 22 32193592 32193592 G T DEPDC5 Silent p.V258V 0.43 TCGA-AD-6889-01 22 36205939 36205940 GT - RBFOX2 Frame_Shift_Del p.T117Sfs*9 0.36 TCGA-AD-6889-01 22 36920660 36920660 G A EIF3D Nonsense_Mutation p.R97* 0.39 TCGA-AD-6889-01 22 37273713 37273713 G A NCF4 3'UTR 0.48 TCGA-AD-6889-01 22 37471274 37471274 C T TMPRSS6 Missense_Mutation p.V424M 0.08 tolerated(0.07) benign(0.133) TCGA-AD-6889-01 22 37771293 37771293 G A ELFN2 Silent p.I94I 0.32 TCGA-AD-6889-01 22 38467748 38467748 C T PICK1 Missense_Mutation p.R185W 0.47 deleterious(0) possibly_damaging(0.846) TCGA-AD-6889-01 22 38477024 38477024 G A SLC16A8 Missense_Mutation p.R341C 0.78 deleterious(0.04) probably_damaging(0.964) TCGA-AD-6889-01 22 38478818 38478818 C T SLC16A8 Silent p.V21V 0.56 TCGA-AD-6889-01 22 38897211 38897211 T - DDX17 Frame_Shift_Del p.K121Sfs*4 0.48 TCGA-AD-6889-01 22 39824173 39824173 C - TAB1 Frame_Shift_Del p.T433Pfs*9 0.30 TCGA-AD-6889-01 22 39887063 39887063 C - MGAT3 3'UTR 0.52 TCGA-AD-6889-01 22 40574097 40574097 C A TNRC6B 5'UTR 0.41 TCGA-AD-6889-01 22 40814619 40814619 T C MKL1 Missense_Mutation p.H608R 0.39 tolerated(0.53) benign(0.016) TCGA-AD-6889-01 22 41574487 41574487 C T EP300 Nonsense_Mutation p.Q2258* 0.40 TCGA-AD-6889-01 22 41747617 41747617 G T ZC3H7B Missense_Mutation p.M667I 0.44 tolerated(0.08) benign(0.005) TCGA-AD-6889-01 22 42523508 42523508 G - CYP2D6 Frame_Shift_Del p.L372Wfs*3 0.29 TCGA-AD-6889-01 22 42610947 42610948 - G TCF20 Frame_Shift_Ins p.Q122Pfs*12 0.45 TCGA-AD-6889-01 22 42908895 42908895 A T RRP7A 3'UTR 0.24 TCGA-AD-6889-01 22 42910178 42910178 G A RRP7A Missense_Mutation p.R231W 0.41 deleterious(0.01) benign(0.047) TCGA-AD-6889-01 22 42912060 42912060 G A RRP7A Missense_Mutation p.P100L 0.27 tolerated(0.06) benign(0.002) TCGA-AD-6889-01 22 42988073 42988073 A C POLDIP3 Missense_Mutation p.C303W 0.41 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 22 43287010 43287010 C T PACSIN2 Silent p.K132K 0.54 TCGA-AD-6889-01 22 44063056 44063056 C T EFCAB6 Silent p.P637P 0.42 TCGA-AD-6889-01 22 44967960 44967960 G A LINC00207 RNA 0.40 TCGA-AD-6889-01 22 45133066 45133066 G A PRR5 Missense_Mutation p.R392Q 0.57 tolerated_low_confidence(0.08) possibly_damaging(0.616) TCGA-AD-6889-01 22 46327020 46327020 C T WNT7B Silent p.A176A 0.35 TCGA-AD-6889-01 22 46768913 46768913 G A CELSR1 Silent p.Y2542Y 0.29 TCGA-AD-6889-01 22 46785282 46785282 G A CELSR1 Missense_Mutation p.R2154C 0.43 deleterious(0) probably_damaging(0.993) TCGA-AD-6889-01 22 50502484 50502484 C T MLC1 Silent p.P346P 0.37 TCGA-AD-6889-01 22 50615953 50615953 C T PANX2 Missense_Mutation p.A271V 0.50 tolerated(0.36) benign(0.055) TCGA-AD-6889-01 22 50689167 50689167 G A HDAC10 Intron 0.56 TCGA-AD-6889-01 22 50877036 50877036 C - PPP6R2 Frame_Shift_Del p.H634Mfs*72 0.36 TCGA-AD-6889-01 22 50942859 50942859 T C LMF2 Missense_Mutation p.Q543R 0.37 deleterious(0) benign(0.158) TCGA-AD-6889-01 22 50943765 50943765 T C LMF2 Splice_Site p.X351_splice 0.30 TCGA-AD-6889-01 22 51008054 51008054 T C CPT1B Missense_Mutation p.E729G 0.44 deleterious(0.04) benign(0.12) TCGA-AD-6889-01 22 51017685 51017685 C A CHKB Splice_Site p.X372_splice 0.41 TCGA-AD-6889-01 2 100006829 100006829 G A EIF5B Missense_Mutation p.A851T 0.43 benign(0.119) TCGA-AD-6889-01 2 100170798 100170798 G A AFF3 Silent p.A1203A 0.46 TCGA-AD-6889-01 2 101612040 101612040 G A NPAS2 Missense_Mutation p.R824Q 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-AD-6889-01 2 101612063 101612063 G A NPAS2 3'UTR 0.48 TCGA-AD-6889-01 2 101902593 101902593 G A RNF149 Nonsense_Mutation p.R304* 0.39 TCGA-AD-6889-01 2 101967234 101967234 G T CREG2 3'UTR 0.41 TCGA-AD-6889-01 2 102031316 102031316 C A RFX8 Missense_Mutation p.K187N 0.35 deleterious(0) possibly_damaging(0.888) TCGA-AD-6889-01 2 107423286 107423286 C T ST6GAL2 Missense_Mutation p.G480R 0.47 probably_damaging(1) TCGA-AD-6889-01 2 109087914 109087914 T - GCC2 Frame_Shift_Del p.L712Cfs*16 0.32 TCGA-AD-6889-01 2 10930938 10930938 G A PDIA6 Silent p.A202A 0.42 TCGA-AD-6889-01 2 109380720 109380720 T G RANBP2 Missense_Mutation p.I1242S 0.15 deleterious(0) probably_damaging(0.956) TCGA-AD-6889-01 2 11053253 11053253 C T KCNF1 Missense_Mutation p.T234I 0.45 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 112751939 112751939 G A MERTK Missense_Mutation p.G470R 0.51 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 113783720 113783720 G A IL36B Silent p.S117S 0.46 TCGA-AD-6889-01 2 11923988 11923988 T C LPIN1 Missense_Mutation p.V482A 0.39 deleterious(0) possibly_damaging(0.69) TCGA-AD-6889-01 2 119604427 119604427 A - EN1 Frame_Shift_Del p.F106Sfs*6 0.48 TCGA-AD-6889-01 2 120639695 120639695 G A PTPN4 Missense_Mutation p.A146T 0.38 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 2 120714431 120714432 - A PTPN4 Frame_Shift_Ins p.P667Tfs*18 0.26 TCGA-AD-6889-01 2 122098300 122098300 G A CLASP1 3'UTR 0.54 TCGA-AD-6889-01 2 122363377 122363377 G T CLASP1 Nonsense_Mutation p.S32* 0.47 TCGA-AD-6889-01 2 124999952 124999952 A T CNTNAP5 Missense_Mutation p.K121N 0.24 deleterious(0.01) benign(0.02) TCGA-AD-6889-01 2 125672796 125672796 T C CNTNAP5 3'UTR 0.35 TCGA-AD-6889-01 2 1263162 1263162 G A SNTG2 Silent p.V342V 0.44 TCGA-AD-6889-01 2 127413868 127413868 C T GYPC Missense_Mutation p.T10M 0.39 deleterious(0.01) benign(0.001) TCGA-AD-6889-01 2 128605749 128605749 G A POLR2D Missense_Mutation p.R121W 0.40 deleterious(0) probably_damaging(0.989) TCGA-AD-6889-01 2 128703080 128703080 G A SAP130 Missense_Mutation p.R977C 0.40 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AD-6889-01 2 131127349 131127349 G A PTPN18 Silent p.K165K 0.44 TCGA-AD-6889-01 2 131128144 131128144 G A PTPN18 Missense_Mutation p.R235Q 0.48 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 131356270 131356270 G A CFC1 Silent p.S64S 0.08 TCGA-AD-6889-01 2 131522735 131522735 A G AMER3 3'UTR 0.47 TCGA-AD-6889-01 2 136566101 136566101 G A LCT Silent p.T1272T 0.38 TCGA-AD-6889-01 2 136664820 136664820 T C DARS 3'UTR 0.15 TCGA-AD-6889-01 2 144903216 144903216 G A GTDC1 Silent p.H90H 0.31 TCGA-AD-6889-01 2 149226939 149226939 C T MBD5 Missense_Mutation p.P476L 0.48 deleterious(0) possibly_damaging(0.851) TCGA-AD-6889-01 2 152354365 152354366 - T NEB Intron 0.36 TCGA-AD-6889-01 2 152382495 152382495 C A NEB Nonsense_Mutation p.E7380* 0.35 TCGA-AD-6889-01 2 152584342 152584342 C T NEB Missense_Mutation p.A53T 0.47 benign(0.209) TCGA-AD-6889-01 2 153378469 153378469 C T FMNL2 Silent p.L44L 0.41 TCGA-AD-6889-01 2 157184376 157184376 A C NR4A2 Missense_Mutation p.L382R 0.42 deleterious(0.01) probably_damaging(0.976) TCGA-AD-6889-01 2 157186671 157186671 A G NR4A2 Missense_Mutation p.S10P 0.37 tolerated(1) benign(0.003) TCGA-AD-6889-01 2 15768639 15768639 A G DDX1 Missense_Mutation p.Y586C 0.10 deleterious(0) probably_damaging(0.981) TCGA-AD-6889-01 2 158272492 158272492 A G CYTIP Silent p.D259D 0.40 TCGA-AD-6889-01 2 160706638 160706638 G T LY75-CD302 Silent p.S1001S 0.13 TCGA-AD-6889-01 2 160982992 160982992 C T ITGB6 Missense_Mutation p.R594H 0.41 tolerated(0.07) probably_damaging(0.995) TCGA-AD-6889-01 2 165578962 165578962 A - COBLL1 Frame_Shift_Del p.Q245Nfs*18 0.31 TCGA-AD-6889-01 2 167056039 167056039 G A SCN9A Silent p.L1693L 0.51 TCGA-AD-6889-01 2 167298136 167298136 C T SCN7A Missense_Mutation p.A643T 0.45 deleterious(0.01) benign(0.186) TCGA-AD-6889-01 2 167330393 167330393 A - SCN7A Frame_Shift_Del p.F120Sfs*6 0.29 TCGA-AD-6889-01 2 168115055 168115055 C T XIRP2 3'UTR 0.05 TCGA-AD-6889-01 2 168727289 168727290 TT - B3GALT1 3'UTR 0.35 TCGA-AD-6889-01 2 169939876 169939876 C T DHRS9 Silent p.G117G 0.49 TCGA-AD-6889-01 2 170677728 170677728 C T METTL5 Missense_Mutation p.A94T 0.49 tolerated(0.27) benign(0.034) TCGA-AD-6889-01 2 172585320 172585320 A G DYNC1I2 Missense_Mutation p.S451G 0.44 deleterious(0.04) benign(0.117) TCGA-AD-6889-01 2 173332274 173332274 G A ITGA6 Missense_Mutation p.G125R 0.51 deleterious(0) probably_damaging(0.994) TCGA-AD-6889-01 2 176948219 176948219 C T EVX2 Missense_Mutation p.A96T 0.45 tolerated(0.28) benign(0.013) TCGA-AD-6889-01 2 178482808 178482808 G A TTC30A Silent p.L208L 0.47 TCGA-AD-6889-01 2 17864974 17864974 A G SMC6 Missense_Mutation p.L912S 0.47 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 2 179259091 179259091 A G OSBPL6 Silent p.V900V 0.49 TCGA-AD-6889-01 2 179404278 179404278 C T TTN Silent p.V32838V 0.42 TCGA-AD-6889-01 2 179410758 179410758 G A TTN Silent p.D31735D 0.44 TCGA-AD-6889-01 2 179427121 179427121 C A TTN Missense_Mutation p.C27913F 0.27 TCGA-AD-6889-01 2 179439575 179439575 A G TTN Missense_Mutation p.Y23762H 0.43 TCGA-AD-6889-01 2 179449540 179449540 C T TTN Missense_Mutation p.A21610T 0.31 TCGA-AD-6889-01 2 179458726 179458726 G A TTN Missense_Mutation p.T19465I 0.08 TCGA-AD-6889-01 2 179563607 179563607 T - TTN Frame_Shift_Del p.V10240Lfs*8 0.20 TCGA-AD-6889-01 2 179575961 179575961 C A TTN Missense_Mutation p.W9334C 0.42 TCGA-AD-6889-01 2 179585797 179585797 T C TTN Missense_Mutation p.H7650R 0.49 TCGA-AD-6889-01 2 182347271 182347271 G T ITGA4 Missense_Mutation p.A312S 0.40 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 182403899 182403899 C A CERKL Missense_Mutation p.E512D 0.48 tolerated(0.56) benign(0.001) TCGA-AD-6889-01 2 186673204 186673204 G A FSIP2 Missense_Mutation p.A6480T 0.40 benign(0.089) TCGA-AD-6889-01 2 187626640 187626640 G A FAM171B Missense_Mutation p.R524H 0.13 tolerated(0.52) benign(0.001) TCGA-AD-6889-01 2 190615331 190615331 T - OSGEPL1 Frame_Shift_Del p.V407Yfs*4 0.31 TCGA-AD-6889-01 2 191302262 191302281 CTTATTGAATTGATCGGCCA - MFSD6 Frame_Shift_Del p.L503Hfs*56 0.21 TCGA-AD-6889-01 2 191524183 191524183 T C NAB1 Missense_Mutation p.I94T 0.44 deleterious(0) probably_damaging(0.918) TCGA-AD-6889-01 2 196600990 196600990 C A SLC39A10 3'UTR 0.76 TCGA-AD-6889-01 2 197183506 197183506 G A HECW2 Missense_Mutation p.T703I 0.53 tolerated_low_confidence(0.19) benign(0.006) TCGA-AD-6889-01 2 197986249 197986249 T C ANKRD44 Missense_Mutation p.Y238C 0.33 tolerated(0.14) benign(0.091) TCGA-AD-6889-01 2 200137115 200137115 C A SATB2 Missense_Mutation p.G674V 0.46 deleterious(0) possibly_damaging(0.811) TCGA-AD-6889-01 2 201485877 201485877 G A AOX1 Missense_Mutation p.G637S 0.51 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 203155109 203155109 G A NOP58 Missense_Mutation p.G188D 0.33 deleterious(0.01) probably_damaging(1) TCGA-AD-6889-01 2 203407071 203407072 AG - BMPR2 Frame_Shift_Del p.E439Gfs*8 0.31 TCGA-AD-6889-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.49 TCGA-AD-6889-01 2 203630500 203630500 C T FAM117B 3'UTR 0.41 TCGA-AD-6889-01 2 208030305 208030305 G A KLF7 5'UTR 0.26 TCGA-AD-6889-01 2 209191072 209191072 T C PIKFYVE Silent p.T1179T 0.44 TCGA-AD-6889-01 2 21001117 21001117 T C C2orf43 Missense_Mutation p.H36R 0.11 tolerated(0.1) benign(0.001) TCGA-AD-6889-01 2 210800483 210800483 C T UNC80 Missense_Mutation p.P2009L 0.34 probably_damaging(0.997) TCGA-AD-6889-01 2 211541814 211541814 G A CPS1 Missense_Mutation p.R1459Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 2 216960780 216960780 G T TMEM169 Missense_Mutation p.D32Y 0.44 deleterious(0) possibly_damaging(0.9) TCGA-AD-6889-01 2 217012833 217012833 C T XRCC5 Missense_Mutation p.R502W 0.40 deleterious(0) benign(0.301) TCGA-AD-6889-01 2 217329339 217329339 C T SMARCAL1 Missense_Mutation p.A697V 0.38 tolerated(0.07) probably_damaging(0.983) TCGA-AD-6889-01 2 218677936 218677936 A G TNS1 Splice_Site p.X1548_splice 0.32 TCGA-AD-6889-01 2 218924782 218924782 G T CXCR2P1 RNA 0.43 TCGA-AD-6889-01 2 219144059 219144059 G T TMBIM1 Silent p.S107S 0.38 TCGA-AD-6889-01 2 219884263 219884263 G - CCDC108 Frame_Shift_Del p.C1147Vfs*13 0.38 TCGA-AD-6889-01 2 219897294 219897294 C G CCDC108 Missense_Mutation p.R181S 0.43 tolerated(0.1) possibly_damaging(0.833) TCGA-AD-6889-01 2 220284878 220284878 G A DES Splice_Site p.X213_splice 0.45 TCGA-AD-6889-01 2 220285043 220285043 C T DES Missense_Mutation p.A237V 0.47 tolerated(0.2) benign(0.03) TCGA-AD-6889-01 2 220342716 220342716 A G SPEG Missense_Mutation p.K1639R 0.39 possibly_damaging(0.809) TCGA-AD-6889-01 2 220366731 220366731 G A GMPPA Missense_Mutation p.R134H 0.38 tolerated(0.11) benign(0) TCGA-AD-6889-01 2 220379130 220379130 G A ASIC4 Missense_Mutation p.R22H 0.41 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-AD-6889-01 2 220402417 220402417 G - ASIC4 Frame_Shift_Del p.G598Afs*10 0.30 TCGA-AD-6889-01 2 220427343 220427343 G A OBSL1 Missense_Mutation p.R912C 0.44 tolerated(0.08) benign(0.017) TCGA-AD-6889-01 2 220502412 220502413 - C SLC4A3 Frame_Shift_Ins p.S912Qfs*83 0.40 TCGA-AD-6889-01 2 222299008 222299008 C A EPHA4 Missense_Mutation p.G784C 0.45 deleterious(0.01) probably_damaging(0.976) TCGA-AD-6889-01 2 223168564 223168564 A G CCDC140 5'UTR 0.41 TCGA-AD-6889-01 2 225668855 225668855 G A DOCK10 Silent p.C1414C 0.35 TCGA-AD-6889-01 2 227662514 227662514 G C IRS1 Missense_Mutation p.A314G 0.41 deleterious(0.01) possibly_damaging(0.757) TCGA-AD-6889-01 2 228552273 228552273 C A SLC19A3 Missense_Mutation p.S444I 0.43 deleterious(0.02) possibly_damaging(0.781) TCGA-AD-6889-01 2 230661315 230661315 A - TRIP12 Frame_Shift_Del p.S1195Lfs*24 0.32 TCGA-AD-6889-01 2 232327966 232327968 TCT - NCL In_Frame_Del p.E26del 0.41 TCGA-AD-6889-01 2 232790183 232790184 - A NPPC Frame_Shift_Ins p.G112Rfs*32 0.34 TCGA-AD-6889-01 2 233322764 233322764 C A ALPI Missense_Mutation p.P305T 0.52 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 233349745 233349745 G A ECEL1 Silent p.D304D 0.25 TCGA-AD-6889-01 2 233433793 233433793 C T EIF4E2 3'UTR 0.54 TCGA-AD-6889-01 2 234229431 234229431 A - SAG Frame_Shift_Del p.K114Sfs*11 0.26 TCGA-AD-6889-01 2 237123067 237123067 G A ASB18 Missense_Mutation p.R347C 0.44 tolerated(0.19) possibly_damaging(0.776) TCGA-AD-6889-01 2 237406002 237406002 A G IQCA1 Missense_Mutation p.V47A 0.37 deleterious(0) benign(0.041) TCGA-AD-6889-01 2 238257027 238257027 C T COL6A3 Missense_Mutation p.G2311R 0.37 unknown(0) TCGA-AD-6889-01 2 238726546 238726546 T C RBM44 Silent p.T329T 0.46 TCGA-AD-6889-01 2 239757154 239757154 A G TWIST2 Missense_Mutation p.K100E 0.43 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 240111713 240111713 C T HDAC4 Missense_Mutation p.R52H 0.38 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 2 240969682 240985323 2:240969682-240985323 - PRR21 large deletion 0.23 TCGA-AD-6889-01 2 241827877 241827877 G A C2orf54 Silent p.R361R 0.44 TCGA-AD-6889-01 2 241835350 241835350 A G C2orf54 Missense_Mutation p.L22P 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AD-6889-01 2 242097257 242097257 A - PPP1R7 Frame_Shift_Del p.N73Tfs*11 0.26 TCGA-AD-6889-01 2 242187458 242187458 T C HDLBP Missense_Mutation p.E564G 0.38 deleterious(0.04) possibly_damaging(0.462) TCGA-AD-6889-01 2 242194477 242194477 G A HDLBP Nonsense_Mutation p.Q393* 0.38 TCGA-AD-6889-01 2 242380875 242380875 A G FARP2 Missense_Mutation p.S439G 0.35 tolerated(0.2) benign(0.044) TCGA-AD-6889-01 2 242611788 242611788 C - ATG4B 3'UTR 0.40 TCGA-AD-6889-01 2 242743476 242743476 C T GAL3ST2 Silent p.G364G 0.44 TCGA-AD-6889-01 2 249813 249813 T C SH3YL1 Silent p.A48A 0.40 TCGA-AD-6889-01 2 26177214 26177214 T C KIF3C Missense_Mutation p.D604G 0.08 benign(0.057) TCGA-AD-6889-01 2 26409196 26409196 C A GAREML Missense_Mutation p.L523I 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-AD-6889-01 2 27121602 27121602 G A DPYSL5 Missense_Mutation p.V79M 0.40 deleterious(0.02) benign(0.003) TCGA-AD-6889-01 2 27248791 27248791 G A MAPRE3 Missense_Mutation p.R223H 0.38 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 27249250 27249250 C - MAPRE3 3'UTR 0.35 TCGA-AD-6889-01 2 27322186 27322186 G T CGREF1 3'Flank 0.43 TCGA-AD-6889-01 2 27503077 27503077 T - DNAJC5G Frame_Shift_Del p.*190K 0.29 TCGA-AD-6889-01 2 27587405 27587405 G A EIF2B4 Silent p.N498N 0.49 TCGA-AD-6889-01 2 27668181 27668181 G T IFT172 Missense_Mutation p.L1684M 0.35 tolerated(0.09) benign(0.085) TCGA-AD-6889-01 2 27849625 27849625 A G CCDC121 3'Flank 0.29 TCGA-AD-6889-01 2 27870765 27870765 G A GPN1 Missense_Mutation p.E346K 0.43 tolerated(0.05) benign(0.08) TCGA-AD-6889-01 2 27888027 27888027 C T SLC4A1AP Missense_Mutation p.R296C 0.51 deleterious(0) probably_damaging(0.943) TCGA-AD-6889-01 2 29274913 29274913 C A FAM179A Missense_Mutation p.P1005H 0.53 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-AD-6889-01 2 29295790 29295790 T C C2orf71 Silent p.P446P 0.10 TCGA-AD-6889-01 2 30143307 30143307 C T ALK Silent p.L73L 0.43 TCGA-AD-6889-01 2 31401443 31401443 A G CAPN14 Silent p.L571L 0.56 TCGA-AD-6889-01 2 33810402 33810402 G C FAM98A Missense_Mutation p.T333R 0.50 tolerated(0.56) benign(0.08) TCGA-AD-6889-01 2 36583469 36583469 G A CRIM1 Missense_Mutation p.G12S 0.54 tolerated_low_confidence(0.06) probably_damaging(0.97) TCGA-AD-6889-01 2 37208635 37208635 A - HEATR5B Frame_Shift_Del p.*2072N 0.47 TCGA-AD-6889-01 2 37513421 37513421 A T PRKD3 Missense_Mutation p.V270D 0.48 deleterious(0) probably_damaging(0.98) TCGA-AD-6889-01 2 39250024 39250024 T C SOS1 Silent p.E515E 0.41 TCGA-AD-6889-01 2 43971105 43971105 C T PLEKHH2 Missense_Mutation p.H1178Y 0.47 deleterious(0) probably_damaging(0.973) TCGA-AD-6889-01 2 47705415 47705415 G A MSH2 Missense_Mutation p.A739T 0.30 deleterious(0) probably_damaging(0.996) TCGA-AD-6889-01 2 54131196 54131196 G T PSME4 Missense_Mutation p.P1014H 0.38 deleterious(0.02) probably_damaging(0.94) TCGA-AD-6889-01 2 54483336 54483336 G T TSPYL6 5'UTR 0.48 TCGA-AD-6889-01 2 55119795 55119795 T C EML6 Splice_Site p.X914_splice 0.42 TCGA-AD-6889-01 2 55777081 55777081 G A SMEK2 Missense_Mutation p.S839L 0.55 tolerated(0.16) benign(0.029) TCGA-AD-6889-01 2 55813814 55813814 C A SMEK2 Missense_Mutation p.R352S 0.47 deleterious(0) probably_damaging(0.983) TCGA-AD-6889-01 2 61389728 61389729 - T C2orf74 Frame_Shift_Ins p.L36Ffs*3 0.38 TCGA-AD-6889-01 2 61522099 61522100 - T USP34 Frame_Shift_Ins p.N1482Kfs*21 0.27 TCGA-AD-6889-01 2 68873251 68873251 C T PROKR1 Missense_Mutation p.L100F 0.42 deleterious(0) benign(0.1) TCGA-AD-6889-01 2 69092786 69092786 C T BMP10 Missense_Mutation p.V418I 0.39 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 2 71206385 71206385 A G ANKRD53 Missense_Mutation p.Y110C 0.49 tolerated(0.13) benign(0.087) TCGA-AD-6889-01 2 73172093 73172093 G A SFXN5 3'UTR 0.37 TCGA-AD-6889-01 2 73718038 73718038 T - ALMS1 Frame_Shift_Del p.L2986Ffs*8 0.26 TCGA-AD-6889-01 2 74074626 74074626 A G STAMBP Missense_Mutation p.H163R 0.41 tolerated(1) benign(0.012) TCGA-AD-6889-01 2 74274984 74274984 C A TET3 Missense_Mutation p.P512H 0.42 deleterious(0) benign(0.303) TCGA-AD-6889-01 2 74327683 74327683 C T TET3 Silent p.S1121S 0.62 TCGA-AD-6889-01 2 74328854 74328854 C T TET3 Silent p.L1512L 0.37 TCGA-AD-6889-01 2 74329281 74329281 G A TET3 Missense_Mutation p.G1654D 0.56 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 2 74512979 74512979 C T SLC4A5 Missense_Mutation p.A108T 0.38 tolerated(0.54) benign(0.004) TCGA-AD-6889-01 2 74531615 74531615 C T SLC4A5 Splice_Site p.X91_splice 0.49 TCGA-AD-6889-01 2 74592704 74592704 C A DCTN1 Missense_Mutation p.E989D 0.39 tolerated(0.83) benign(0.004) TCGA-AD-6889-01 2 74906846 74906846 C - SEMA4F Frame_Shift_Del p.R610Gfs*9 0.29 TCGA-AD-6889-01 2 74907378 74907378 C T SEMA4F 3'UTR 0.24 TCGA-AD-6889-01 2 85011873 85011873 T - DNAH6 Frame_Shift_Del p.L3633* 0.29 TCGA-AD-6889-01 2 85273316 85273316 C T KCMF1 Silent p.H172H 0.44 TCGA-AD-6889-01 2 85570828 85570828 G A RETSAT Missense_Mutation p.R543C 0.24 deleterious(0.03) possibly_damaging(0.637) TCGA-AD-6889-01 2 87069373 87069373 G A CD8B Intron 0.36 TCGA-AD-6889-01 2 88474165 88474165 C A THNSL2 Silent p.I77I 0.40 TCGA-AD-6889-01 2 88857126 88857126 A - EIF2AK3 3'UTR 0.26 TCGA-AD-6889-01 2 89417121 89417121 C T IGKV1-17 Silent p.R21R 0.40 TCGA-AD-6889-01 2 89544323 89544323 T C IGKV2-30 Missense_Mutation p.S101G 0.32 deleterious(0.02) benign(0.116) TCGA-AD-6889-01 2 91843448 91843448 C T AC027612.6 RNA 0.11 TCGA-AD-6889-01 2 96040896 96040896 C A KCNIP3 Silent p.T129T 0.40 TCGA-AD-6889-01 2 96459538 96459539 - C AC008268.2 RNA 0.20 TCGA-AD-6889-01 2 96993311 96993311 C T ITPRIPL1 Silent p.D322D 0.49 TCGA-AD-6889-01 2 97218118 97218118 G - ARID5A 3'UTR 0.17 TCGA-AD-6889-01 2 97493474 97493474 A G CNNM3 Missense_Mutation p.D509G 0.27 deleterious(0.02) possibly_damaging(0.45) TCGA-AD-6889-01 2 97862350 97862350 A G ANKRD36 Missense_Mutation p.T858A 0.42 tolerated_low_confidence(1) benign(0) TCGA-AD-6889-01 2 99778466 99778466 A G LIPT1 Missense_Mutation p.N16D 0.41 tolerated(0.34) benign(0.021) TCGA-AD-6889-01 2 99861879 99861879 G A LYG2 Missense_Mutation p.A76V 0.35 tolerated(0.46) benign(0.013) TCGA-AD-6889-01 3 10084751 10084751 G A FANCD2 Silent p.R302R 0.38 TCGA-AD-6889-01 3 10183784 10183784 C T VHL Silent p.L85L 0.27 TCGA-AD-6889-01 3 10427004 10427004 G A ATP2B2 Silent p.D316D 0.27 TCGA-AD-6889-01 3 105250904 105250904 A - ALCAM Frame_Shift_Del p.K153Sfs*34 0.10 TCGA-AD-6889-01 3 105588202 105588202 C T CBLB 5'Flank 0.44 TCGA-AD-6889-01 3 107429449 107429449 G A BBX Missense_Mutation p.E48K 0.51 deleterious(0.01) benign(0.169) TCGA-AD-6889-01 3 107520065 107520065 C T BBX Missense_Mutation p.A892V 0.45 deleterious(0) possibly_damaging(0.505) TCGA-AD-6889-01 3 108363318 108363319 - A DZIP3 Frame_Shift_Ins p.G486Rfs*10 0.27 TCGA-AD-6889-01 3 109056324 109056324 G A DPPA4 Missense_Mutation p.A14V 0.55 tolerated(0.13) benign(0.003) TCGA-AD-6889-01 3 10960089 10960089 T - SLC6A11 Frame_Shift_Del p.F358Lfs*31 0.36 TCGA-AD-6889-01 3 110790980 110790980 T C PVRL3 Missense_Mutation p.L39P 0.43 tolerated(0.22) probably_damaging(0.928) TCGA-AD-6889-01 3 112738501 112738502 - G C3orf17 5'UTR 0.44 TCGA-AD-6889-01 3 113004367 113004367 G A BOC Missense_Mutation p.D1038N 0.39 tolerated_low_confidence(0.44) benign(0.03) TCGA-AD-6889-01 3 119013847 119013847 G T ARHGAP31 Missense_Mutation p.Q32H 0.31 deleterious(0) possibly_damaging(0.711) TCGA-AD-6889-01 3 119112324 119112324 T C ARHGAP31 Missense_Mutation p.S298P 0.50 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 3 119210364 119210364 G A POGLUT1 Splice_Site p.X322_splice 0.48 TCGA-AD-6889-01 3 119528944 119528944 C A NR1I2 Silent p.P117P 0.40 TCGA-AD-6889-01 3 119886915 119886915 T G GPR156 Missense_Mutation p.E470A 0.41 tolerated(0.43) benign(0.055) TCGA-AD-6889-01 3 120489585 120489585 C T GTF2E1 Silent p.R153R 0.46 TCGA-AD-6889-01 3 121248601 121248601 C T POLQ Silent p.T333T 0.55 TCGA-AD-6889-01 3 121342046 121342046 C T FBXO40 Silent p.S590S 0.37 TCGA-AD-6889-01 3 121641884 121641884 C T SLC15A2 Intron 0.49 TCGA-AD-6889-01 3 122003855 122003855 C T CASR Silent p.C1028C 0.41 TCGA-AD-6889-01 3 122259383 122259383 A G PARP9 Silent p.D602D 0.38 TCGA-AD-6889-01 3 122496601 122496601 G A HSPBAP1 Nonsense_Mutation p.R73* 0.46 TCGA-AD-6889-01 3 122835106 122835106 G A PDIA5 Silent p.P190P 0.31 TCGA-AD-6889-01 3 123166485 123166485 T C ADCY5 Missense_Mutation p.Y303C 0.56 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 3 125176130 125176130 A G SNX4 Missense_Mutation p.C342R 0.44 tolerated(0.92) benign(0.001) TCGA-AD-6889-01 3 12650747 12650747 G A RAF1 Silent p.L136L 0.47 TCGA-AD-6889-01 3 126707994 126707994 C T PLXNA1 Silent p.F186F 0.37 TCGA-AD-6889-01 3 126735391 126735391 C - PLXNA1 Frame_Shift_Del p.Q1019Rfs*22 0.37 TCGA-AD-6889-01 3 127336235 127336235 C T MCM2 Silent p.A629A 0.65 TCGA-AD-6889-01 3 129389419 129389421 TCT - TMCC1 In_Frame_Del p.E421del 0.38 TCGA-AD-6889-01 3 130852756 130852756 T C NEK11 Silent p.P201P 0.49 TCGA-AD-6889-01 3 132415626 132415626 G A NPHP3 Missense_Mutation p.A707V 0.40 deleterious(0.05) benign(0.11) TCGA-AD-6889-01 3 13377002 13377002 C - NUP210 Frame_Shift_Del p.Q1266Sfs*28 0.31 TCGA-AD-6889-01 3 133907728 133907728 T C RYK Missense_Mutation p.E353G 0.41 deleterious(0.04) benign(0.019) TCGA-AD-6889-01 3 136060331 136060331 C A STAG1 Missense_Mutation p.R1170I 0.42 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-AD-6889-01 3 140865986 140865986 G A SPSB4 Missense_Mutation p.E233K 0.49 tolerated(0.12) benign(0.005) TCGA-AD-6889-01 3 141305569 141305569 A T RASA2 Missense_Mutation p.R636S 0.44 tolerated(0.11) benign(0.185) TCGA-AD-6889-01 3 147108991 147108991 C T ZIC4 Missense_Mutation p.R294H 0.37 deleterious(0.02) probably_damaging(0.988) TCGA-AD-6889-01 3 150321127 150321127 C T SELT 5'UTR 0.37 TCGA-AD-6889-01 3 150690465 150690465 A - CLRN1 Frame_Shift_Del p.C11Afs*15 0.33 TCGA-AD-6889-01 3 15100904 15100904 C T MRPS25 Silent p.T71T 0.36 TCGA-AD-6889-01 3 151045825 151045825 C T P2RY13 Missense_Mutation p.S340N 0.35 tolerated(0.24) benign(0.009) TCGA-AD-6889-01 3 151164755 151164755 G A IGSF10 Missense_Mutation p.P1005L 0.22 deleterious(0.04) benign(0.026) TCGA-AD-6889-01 3 153839879 153839879 G A ARHGEF26 Missense_Mutation p.S33N 0.45 tolerated_low_confidence(0.18) benign(0.02) TCGA-AD-6889-01 3 154055633 154055633 T C GPR149 Missense_Mutation p.D684G 0.37 tolerated(0.1) benign(0.068) TCGA-AD-6889-01 3 156877240 156877242 AAC - CCNL1 In_Frame_Del p.L110del 0.48 TCGA-AD-6889-01 3 158538003 158538003 G A MFSD1 Splice_Site p.X300_splice 0.45 TCGA-AD-6889-01 3 159482843 159482843 G T IQCJ-SCHIP1 Missense_Mutation p.E301D 0.43 tolerated(0.3) benign(0.121) TCGA-AD-6889-01 3 16343189 16343189 T C OXNAD1 Silent p.P163P 0.46 TCGA-AD-6889-01 3 165547794 165547795 - T BCHE Frame_Shift_Ins p.T343Nfs*8 0.42 TCGA-AD-6889-01 3 167742804 167742804 A G GOLIM4 Missense_Mutation p.V568A 0.35 tolerated(0.21) benign(0.015) TCGA-AD-6889-01 3 168833560 168833560 A - MECOM Frame_Shift_Del p.P578Qfs*15 0.30 TCGA-AD-6889-01 3 172642099 172642099 T - SPATA16 Frame_Shift_Del p.T413Hfs*5 0.32 TCGA-AD-6889-01 3 180326404 180326404 G A TTC14 Intron 0.43 TCGA-AD-6889-01 3 183777417 183777417 C - HTR3C Frame_Shift_Del p.L307Sfs*12 0.31 TCGA-AD-6889-01 3 18391030 18391030 G A SATB1 Nonsense_Mutation p.R674* 0.36 TCGA-AD-6889-01 3 183911374 183911374 T C ABCF3 Missense_Mutation p.V673A 0.39 deleterious(0) benign(0.213) TCGA-AD-6889-01 3 184090466 184090466 A G THPO Silent p.P299P 0.41 TCGA-AD-6889-01 3 185766510 185766510 G A ETV5 Missense_Mutation p.T484I 0.22 deleterious(0) possibly_damaging(0.601) TCGA-AD-6889-01 3 186289885 186289885 C T DNAJB11 Nonsense_Mutation p.R24* 0.46 TCGA-AD-6889-01 3 189526189 189526189 G A TP63 Silent p.Q151Q 0.42 TCGA-AD-6889-01 3 194080443 194080443 T C LRRC15 Missense_Mutation p.R450G 0.49 deleterious(0.01) possibly_damaging(0.74) TCGA-AD-6889-01 3 194140689 194140689 A - ATP13A3 Frame_Shift_Del p.F1107Lfs*5 0.28 TCGA-AD-6889-01 3 194151723 194151723 C T ATP13A3 Missense_Mutation p.R858H 0.07 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 3 194409104 194409104 G A FAM43A 3'UTR 0.38 TCGA-AD-6889-01 3 195295728 195295728 C T APOD 3'UTR 0.48 TCGA-AD-6889-01 3 195712607 195712607 G A SDHAP1 RNA 0.22 TCGA-AD-6889-01 3 196094916 196094917 - G UBXN7 Frame_Shift_Ins p.K273Qfs*14 0.38 TCGA-AD-6889-01 3 25622124 25622124 G A RARB Missense_Mutation p.V233M 0.49 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 3 25654073 25654073 C T TOP2B Missense_Mutation p.R1235K 0.40 tolerated(0.32) benign(0.007) TCGA-AD-6889-01 3 2967337 2967337 C A CNTN4 Missense_Mutation p.T411K 0.39 deleterious(0.02) benign(0.065) TCGA-AD-6889-01 3 30936112 30936112 C T GADL1 5'UTR 0.44 TCGA-AD-6889-01 3 33427137 33427137 C A FBXL2 3'UTR 0.39 TCGA-AD-6889-01 3 36874441 36874441 C A TRANK1 Missense_Mutation p.R2167S 0.34 tolerated(0.16) benign(0.128) TCGA-AD-6889-01 3 37053347 37053348 - A MLH1 Frame_Shift_Ins p.Q197Tfs*7 0.33 TCGA-AD-6889-01 3 39161506 39161506 C T TTC21A Nonsense_Mutation p.R307* 0.11 TCGA-AD-6889-01 3 42727604 42727604 G A KLHL40 Missense_Mutation p.R165H 0.42 deleterious(0) probably_damaging(0.941) TCGA-AD-6889-01 3 42906595 42906595 G A ACKR2 Missense_Mutation p.G201R 0.50 tolerated(0.1) possibly_damaging(0.792) TCGA-AD-6889-01 3 42908365 42908371 GATTGAT AGATTGA ACKR2 3'UTR 0.17 TCGA-AD-6889-01 3 43389939 43389939 G A SNRK Missense_Mutation p.V730M 0.48 deleterious_low_confidence(0) possibly_damaging(0.671) TCGA-AD-6889-01 3 44541546 44541546 T G ZNF852 Missense_Mutation p.K241N 0.36 deleterious(0) possibly_damaging(0.77) TCGA-AD-6889-01 3 44775874 44775874 A - ZNF501 5'UTR 0.50 TCGA-AD-6889-01 3 46008574 46008575 - TCTC FYCO1 Frame_Shift_Ins p.K751Rfs*12 0.43 TCGA-AD-6889-01 3 46306845 46306845 C T CCR3 Nonsense_Mutation p.R87* 0.12 TCGA-AD-6889-01 3 46718411 46718411 T G ALS2CL Missense_Mutation p.E620A 0.39 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 3 46935416 46935416 T C PTH1R Missense_Mutation p.M32T 0.44 deleterious(0.03) benign(0.02) TCGA-AD-6889-01 3 47125832 47125832 T - SETD2 Frame_Shift_Del p.N1813Ifs*25 0.27 TCGA-AD-6889-01 3 47951360 47951360 T A MAP4 Intron 0.47 TCGA-AD-6889-01 3 47969775 47969775 G A MAP4 Missense_Mutation p.P120S 0.42 deleterious(0.02) probably_damaging(1) TCGA-AD-6889-01 3 48459713 48459713 G A PLXNB1 Missense_Mutation p.P1037S 0.24 tolerated(0.37) probably_damaging(0.998) TCGA-AD-6889-01 3 48610630 48610630 G T COL7A1 Missense_Mutation p.P2231T 0.29 possibly_damaging(0.641) TCGA-AD-6889-01 3 48659073 48659073 C - TMEM89 Frame_Shift_Del p.C40Vfs*13 0.36 TCGA-AD-6889-01 3 48684257 48684257 C T CELSR3 Missense_Mutation p.V2412I 0.34 tolerated(1) benign(0.021) TCGA-AD-6889-01 3 48716604 48716604 G A NCKIPSD Missense_Mutation p.T528M 0.46 deleterious(0.02) benign(0.302) TCGA-AD-6889-01 3 49051280 49051280 T C WDR6 Silent p.C801C 0.33 TCGA-AD-6889-01 3 49065925 49065925 G A IMPDH2 Missense_Mutation p.T63I 0.43 tolerated(0.19) possibly_damaging(0.868) TCGA-AD-6889-01 3 49170091 49170091 C T LAMB2 Missense_Mutation p.A28T 0.51 tolerated(0.19) benign(0.002) TCGA-AD-6889-01 3 49946704 49946704 G A MON1A Silent p.N600N 0.46 TCGA-AD-6889-01 3 49947569 49947569 G A MON1A Silent p.S551S 0.51 TCGA-AD-6889-01 3 49949168 49949168 G T MON1A Missense_Mutation p.P232H 0.21 tolerated(0.12) benign(0.264) TCGA-AD-6889-01 3 50256254 50256254 C T SLC38A3 RNA 0.44 TCGA-AD-6889-01 3 50293702 50293702 G A GNAI2 Silent p.K181K 0.14 TCGA-AD-6889-01 3 50295109 50295109 G A GNAI2 Missense_Mutation p.C352Y 0.26 tolerated(0.06) probably_damaging(0.996) TCGA-AD-6889-01 3 51992098 51992098 C T PCBP4 Silent p.R397R 0.35 TCGA-AD-6889-01 3 52327214 52327214 T C GLYCTK 3'UTR 0.43 TCGA-AD-6889-01 3 52415720 52415720 T C DNAH1 Missense_Mutation p.L2558P 0.40 probably_damaging(1) TCGA-AD-6889-01 3 52432055 52432055 A T DNAH1 Missense_Mutation p.E3989V 0.40 benign(0.062) TCGA-AD-6889-01 3 52543930 52543930 G - STAB1 Frame_Shift_Del p.V800Cfs*113 0.36 TCGA-AD-6889-01 3 52552008 52552008 C T STAB1 Nonsense_Mutation p.R1584* 0.44 TCGA-AD-6889-01 3 52554001 52554001 G A STAB1 Silent p.R1759R 0.45 TCGA-AD-6889-01 3 53844275 53844275 C T CACNA1D Missense_Mutation p.R2068W 0.47 tolerated_low_confidence(0.19) possibly_damaging(0.648) TCGA-AD-6889-01 3 56653359 56653359 A G CCDC66 Silent p.L813L 0.43 TCGA-AD-6889-01 3 57542677 57542677 G A PDE12 Missense_Mutation p.A191T 0.42 tolerated(0.59) benign(0.001) TCGA-AD-6889-01 3 58089788 58089788 G - FLNB Frame_Shift_Del p.G531Dfs*42 0.33 TCGA-AD-6889-01 3 61975381 61975381 G C PTPRG Missense_Mutation p.Q91H 0.34 tolerated(0.32) benign(0.002) TCGA-AD-6889-01 3 62278359 62278359 T - PTPRG Intron 0.31 TCGA-AD-6889-01 3 66444486 66444487 CA - LRIG1 Frame_Shift_Del p.V482Afs*9 0.31 TCGA-AD-6889-01 3 69084177 69084177 C T TMF1 Silent p.Q747Q 0.33 TCGA-AD-6889-01 3 69169050 69169050 A T LMOD3 Missense_Mutation p.D152E 0.43 tolerated(1) benign(0.001) TCGA-AD-6889-01 3 72971486 72971486 G A GXYLT2 Silent p.P200P 0.47 TCGA-AD-6889-01 3 77595587 77595588 - T ROBO2 Frame_Shift_Ins p.W363Lfs*21 0.29 TCGA-AD-6889-01 3 89480310 89480310 C T EPHA3 Missense_Mutation p.A716V 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-AD-6889-01 3 93761945 93761945 T C ARL13B Silent p.H295H 0.08 TCGA-AD-6889-01 3 97851713 97851713 C A OR5H1 Missense_Mutation p.P58T 0.36 deleterious(0) possibly_damaging(0.901) TCGA-AD-6889-01 3 9825771 9825771 C T TADA3 Silent p.R349R 0.10 TCGA-AD-6889-01 3 99514534 99514534 C - COL8A1 Frame_Shift_Del p.H599Mfs*24 0.37 TCGA-AD-6889-01 4 10083043 10083043 C T WDR1 Missense_Mutation p.V408I 0.44 tolerated(0.4) benign(0.003) TCGA-AD-6889-01 4 10445147 10445147 A G ZNF518B Missense_Mutation p.C936R 0.41 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 4 106160233 106160233 T G TET2 Intron 0.33 TCGA-AD-6889-01 4 106888343 106888343 A G NPNT Splice_Site p.X479_splice 0.54 TCGA-AD-6889-01 4 114254358 114254358 G T ANK2 Missense_Mutation p.D1125Y 0.23 probably_damaging(1) TCGA-AD-6889-01 4 119948013 119948013 C T SYNPO2 Silent p.S163S 0.37 TCGA-AD-6889-01 4 122722883 122722883 C T EXOSC9 Intron 0.39 TCGA-AD-6889-01 4 122833202 122833202 G A TRPC3 Missense_Mutation p.A463V 0.31 deleterious(0) possibly_damaging(0.756) TCGA-AD-6889-01 4 123176009 123176009 G A KIAA1109 Missense_Mutation p.V2042I 0.48 benign(0.11) TCGA-AD-6889-01 4 124323508 124323508 C A SPRY1 Nonsense_Mutation p.C254* 0.43 TCGA-AD-6889-01 4 126239624 126239624 C T FAT4 Silent p.S686S 0.38 TCGA-AD-6889-01 4 126371493 126371493 G A FAT4 Missense_Mutation p.V3108I 0.43 benign(0.012) TCGA-AD-6889-01 4 126372831 126372831 G A FAT4 Missense_Mutation p.A3554T 0.38 probably_damaging(0.983) TCGA-AD-6889-01 4 13615149 13615149 C T BOD1L1 Silent p.E437E 0.45 TCGA-AD-6889-01 4 144258385 144258385 C - GAB1 Frame_Shift_Del p.P17Rfs*5 0.31 TCGA-AD-6889-01 4 146058514 146058514 T - OTUD4 3'UTR 0.50 TCGA-AD-6889-01 4 151935891 151935891 C T LRBA 5'UTR 0.67 TCGA-AD-6889-01 4 152054200 152054200 C A SH3D19 Missense_Mutation p.G635V 0.45 tolerated(0.08) benign(0.128) TCGA-AD-6889-01 4 152212394 152212394 A - PRSS48 Frame_Shift_Del p.K260Nfs*13 0.33 TCGA-AD-6889-01 4 153303407 153303407 A G FBXW7 Intron 0.51 TCGA-AD-6889-01 4 153332679 153332679 C A FBXW7 Nonsense_Mutation p.G93* 0.42 TCGA-AD-6889-01 4 155160425 155160425 C - DCHS2 Frame_Shift_Del p.Y2009Ifs*4 0.34 TCGA-AD-6889-01 4 155254146 155254146 C T DCHS2 Missense_Mutation p.V573I 0.50 tolerated(0.78) benign(0.006) TCGA-AD-6889-01 4 155507480 155507480 G A FGA Silent p.R367R 0.40 TCGA-AD-6889-01 4 155510670 155510670 G A FGA Silent p.G33G 0.41 TCGA-AD-6889-01 4 156631861 156631861 A G GUCY1A3 Missense_Mutation p.R182G 0.34 tolerated(0.27) benign(0.003) TCGA-AD-6889-01 4 156751150 156751150 G A ASIC5 Missense_Mutation p.T459M 0.42 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 4 156831258 156831258 G A TDO2 Missense_Mutation p.M171I 0.45 tolerated(0.48) benign(0.016) TCGA-AD-6889-01 4 158064989 158064989 C T GLRB Missense_Mutation p.T261I 0.12 tolerated(0.29) probably_damaging(0.977) TCGA-AD-6889-01 4 158142160 158142161 AG - GRIA2 5'UTR 0.22 TCGA-AD-6889-01 4 158224769 158224769 A G GRIA2 Missense_Mutation p.T99A 0.45 deleterious(0.04) benign(0.291) TCGA-AD-6889-01 4 158281188 158281188 G A GRIA2 Silent p.T728T 0.46 TCGA-AD-6889-01 4 160235805 160235805 C T RAPGEF2 Silent p.S85S 0.62 TCGA-AD-6889-01 4 162306859 162306859 A G FSTL5 3'UTR 0.40 TCGA-AD-6889-01 4 164048114 164048114 T - NAF1 3'Flank 0.27 TCGA-AD-6889-01 4 164393491 164393491 C T TKTL2 Missense_Mutation p.A466T 0.45 deleterious(0.03) probably_damaging(0.97) TCGA-AD-6889-01 4 16504316 16504316 C T LDB2 Missense_Mutation p.A358T 0.43 tolerated(0.24) benign(0.002) TCGA-AD-6889-01 4 170057631 170057631 C T SH3RF1 Silent p.R302R 0.40 TCGA-AD-6889-01 4 1737016 1737016 G A TACC3 Silent p.A536A 0.42 TCGA-AD-6889-01 4 174450159 174450159 C - HAND2 Frame_Shift_Del p.P95Rfs*4 0.26 TCGA-AD-6889-01 4 176923521 176923521 G A GPM6A 5'Flank 0.40 TCGA-AD-6889-01 4 17711250 17711250 G T FAM184B Missense_Mutation p.N53K 0.39 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 4 1804706 1804706 C T FGFR3 Silent p.D332D 0.35 TCGA-AD-6889-01 4 1806690 1806690 G A FGFR3 Missense_Mutation p.R471Q 0.48 deleterious(0) possibly_damaging(0.611) TCGA-AD-6889-01 4 184205540 184205540 C T WWC2 Silent p.C1015C 0.41 TCGA-AD-6889-01 4 185310142 185310142 G A IRF2 Silent p.L274L 0.44 TCGA-AD-6889-01 4 185593330 185593330 A T PRIMPOL Missense_Mutation p.N187I 0.38 probably_damaging(0.975) TCGA-AD-6889-01 4 186326934 186326934 C T UFSP2 Missense_Mutation p.G400R 0.46 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 4 187522486 187522486 G A FAT1 Silent p.L3859L 0.42 TCGA-AD-6889-01 4 188924787 188924787 G A ZFP42 Missense_Mutation p.V276M 0.41 deleterious(0.02) benign(0.037) TCGA-AD-6889-01 4 20255528 20255528 G A SLIT2 Silent p.A30A 0.47 TCGA-AD-6889-01 4 20270490 20270490 G C SLIT2 Silent p.A127A 0.47 TCGA-AD-6889-01 4 23833260 23833260 C T PPARGC1A Missense_Mutation p.V117M 0.46 tolerated(0.06) probably_damaging(0.988) TCGA-AD-6889-01 4 25664150 25664150 G A SLC34A2 Missense_Mutation p.A10T 0.40 tolerated(0.15) benign(0.284) TCGA-AD-6889-01 4 26483255 26483255 A T CCKAR 3'UTR 0.41 TCGA-AD-6889-01 4 2941287 2941287 G T NOP14 Missense_Mutation p.P762Q 0.52 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 4 30726089 30726089 A - PCDH7 Frame_Shift_Del p.K1017Nfs*47 0.11 TCGA-AD-6889-01 4 3129169 3129169 G T HTT Missense_Mutation p.E527D 0.33 benign(0.014) TCGA-AD-6889-01 4 3445788 3445788 C T HGFAC Silent p.S166S 0.56 TCGA-AD-6889-01 4 36115854 36115854 T - ARAP2 Frame_Shift_Del p.N1365Ifs*21 0.30 TCGA-AD-6889-01 4 38691475 38691476 - C KLF3 Frame_Shift_Ins p.Q227Afs*37 0.38 TCGA-AD-6889-01 4 40245027 40245027 C T RHOH Silent p.C7C 0.42 TCGA-AD-6889-01 4 41987126 41987127 TA - DCAF4L1 3'UTR 0.41 TCGA-AD-6889-01 4 44177044 44177044 T - KCTD8 Frame_Shift_Del p.A396Hfs*39 0.34 TCGA-AD-6889-01 4 4419189 4419189 G A NSG1 3'UTR 0.53 TCGA-AD-6889-01 4 46314590 46314590 T - GABRA2 Frame_Shift_Del p.K133Nfs*3 0.30 TCGA-AD-6889-01 4 48536581 48536581 A T FRYL Missense_Mutation p.I2229N 0.40 deleterious(0.02) benign(0.367) TCGA-AD-6889-01 4 499522 499522 A G PIGG Missense_Mutation p.S126G 0.38 tolerated(0.25) possibly_damaging(0.734) TCGA-AD-6889-01 4 52862110 52862110 G A LRRC66 Missense_Mutation p.R360C 0.30 deleterious(0.03) possibly_damaging(0.855) TCGA-AD-6889-01 4 52890074 52890074 A - SGCB 3'UTR 0.33 TCGA-AD-6889-01 4 54966752 54966752 G T GSX2 Missense_Mutation p.G81W 0.59 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-AD-6889-01 4 54967815 54967815 T C GSX2 Missense_Mutation p.L214P 0.47 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 4 55968584 55968584 A G KDR Silent p.N693N 0.40 TCGA-AD-6889-01 4 57181401 57181401 C A KIAA1211 Missense_Mutation p.A578D 0.60 deleterious(0.01) benign(0.31) TCGA-AD-6889-01 4 57182824 57182824 A C KIAA1211 Missense_Mutation p.K1052N 0.15 deleterious(0) possibly_damaging(0.607) TCGA-AD-6889-01 4 57318148 57318148 A C PAICS Silent p.P301P 0.42 TCGA-AD-6889-01 4 65188404 65188404 T C TECRL Intron 0.40 TCGA-AD-6889-01 4 68380388 68380388 G A CENPC Missense_Mutation p.A283V 0.16 tolerated(0.73) benign(0.001) TCGA-AD-6889-01 4 68512497 68512497 C A UBA6 Missense_Mutation p.A421S 0.36 tolerated(0.09) benign(0.031) TCGA-AD-6889-01 4 71114916 71114916 C T CSN3 Nonsense_Mutation p.Q97* 0.41 TCGA-AD-6889-01 4 71847820 71847820 G T MOB1B 3'UTR 0.45 TCGA-AD-6889-01 4 7435247 7435247 T C PSAPL1 Missense_Mutation p.K454E 0.33 tolerated(0.89) benign(0.098) TCGA-AD-6889-01 4 74442377 74442377 C T RASSF6 Missense_Mutation p.A297T 0.32 deleterious(0.05) probably_damaging(0.919) TCGA-AD-6889-01 4 74847144 74847144 C T PF4 Missense_Mutation p.A70T 0.45 tolerated(0.32) benign(0.011) TCGA-AD-6889-01 4 77300523 77300523 G A CCDC158 Missense_Mutation p.R317C 0.21 tolerated(0.09) benign(0.004) TCGA-AD-6889-01 4 786363 786363 C - CPLX1 Frame_Shift_Del p.G22Vfs*73 0.37 TCGA-AD-6889-01 4 78783991 78783991 G A MRPL1 5'UTR 0.43 TCGA-AD-6889-01 4 78804517 78804517 A C MRPL1 Missense_Mutation p.K89Q 0.14 tolerated(0.09) possibly_damaging(0.616) TCGA-AD-6889-01 4 80247154 80247154 G A NAA11 5'UTR 0.38 TCGA-AD-6889-01 4 81952644 81952644 C T BMP3 Missense_Mutation p.T69M 0.41 tolerated(0.08) benign(0.003) TCGA-AD-6889-01 4 8307777 8307777 G A HTRA3 Missense_Mutation p.V426M 0.46 deleterious(0) possibly_damaging(0.843) TCGA-AD-6889-01 4 83778151 83778151 C T SEC31A Missense_Mutation p.R612Q 0.47 tolerated(0.57) benign(0.008) TCGA-AD-6889-01 4 84230097 84230097 T C HPSE Missense_Mutation p.E331G 0.43 tolerated(0.22) benign(0.013) TCGA-AD-6889-01 4 84361142 84361142 T - HELQ Frame_Shift_Del p.K561Rfs*8 0.32 TCGA-AD-6889-01 4 8582927 8582927 C T GPR78 Missense_Mutation p.P73L 0.47 tolerated(0.07) benign(0.36) TCGA-AD-6889-01 4 86938502 86938502 T C MAPK10 Missense_Mutation p.E425G 0.46 tolerated_low_confidence(0.07) benign(0.001) TCGA-AD-6889-01 4 87622733 87622733 A G PTPN13 Missense_Mutation p.H325R 0.56 tolerated(0.34) benign(0.003) TCGA-AD-6889-01 4 88416222 88416222 C T SPARCL1 Missense_Mutation p.D38N 0.48 tolerated(0.28) benign(0.002) TCGA-AD-6889-01 4 89591405 89591405 T C HERC3 Splice_Site p.X637_splice 0.37 TCGA-AD-6889-01 4 89941749 89941749 C T FAM13A Missense_Mutation p.E97K 0.44 deleterious(0.01) probably_damaging(0.976) TCGA-AD-6889-01 4 94436427 94436427 G A GRID2 Silent p.A686A 0.38 TCGA-AD-6889-01 4 951641 951641 T C TMEM175 Missense_Mutation p.V291A 0.47 deleterious(0.03) benign(0.327) TCGA-AD-6889-01 4 9785349 9785349 G C DRD5 3'UTR 0.25 TCGA-AD-6889-01 4 983924 983924 G A SLC26A1 Missense_Mutation p.T268M 0.48 tolerated(0.07) benign(0.358) TCGA-AD-6889-01 4 99064317 99064317 G - STPG2 5'UTR 0.10 TCGA-AD-6889-01 5 100147787 100147787 G T ST8SIA4 Missense_Mutation p.L282I 0.49 possibly_damaging(0.679) TCGA-AD-6889-01 5 100191952 100191952 G A ST8SIA4 Silent p.L218L 0.41 TCGA-AD-6889-01 5 102613144 102613144 A G C5orf30 3'UTR 0.43 TCGA-AD-6889-01 5 109117120 109117120 T - MAN2A1 Frame_Shift_Del p.F468Lfs*22 0.30 TCGA-AD-6889-01 5 109120576 109120576 A T MAN2A1 Missense_Mutation p.D570V 0.47 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 5 114604650 114604650 G A CCDC112 Silent p.T492T 0.49 TCGA-AD-6889-01 5 11565087 11565087 C T CTNND2 Missense_Mutation p.G86R 0.36 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 5 118502339 118502339 T - DMXL1 Frame_Shift_Del p.F1668Lfs*15 0.31 TCGA-AD-6889-01 5 121355908 121355908 C T SRFBP1 Missense_Mutation p.R160C 0.13 deleterious(0.04) benign(0.022) TCGA-AD-6889-01 5 121356129 121356130 - A SRFBP1 Frame_Shift_Ins p.N236Kfs*5 0.27 TCGA-AD-6889-01 5 121786371 121786371 A G SNCAIP Missense_Mutation p.K610R 0.17 tolerated(0.32) benign(0.029) TCGA-AD-6889-01 5 122713081 122713081 C T CEP120 Missense_Mutation p.R782H 0.42 deleterious(0.01) possibly_damaging(0.506) TCGA-AD-6889-01 5 126784821 126784821 A - MEGF10 Frame_Shift_Del p.N964Mfs*2 0.32 TCGA-AD-6889-01 5 129519965 129519965 G T CHSY3 Missense_Mutation p.G377V 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-AD-6889-01 5 130764700 130764700 C T CTC-432M15.3 Missense_Mutation p.V1609M 0.09 tolerated_low_confidence(0.31) benign(0.004) TCGA-AD-6889-01 5 131978660 131978660 G A RAD50 3'UTR 0.46 TCGA-AD-6889-01 5 134193709 134193711 TAT - C5orf24 3'UTR 0.45 TCGA-AD-6889-01 5 137534426 137534427 - A CDC23 Frame_Shift_Ins p.L234Sfs*23 0.29 TCGA-AD-6889-01 5 137680836 137680836 G T FAM53C Silent p.G153G 0.54 TCGA-AD-6889-01 5 138160357 138160357 C A CTNNA1 Missense_Mutation p.L243M 0.44 tolerated(0.06) possibly_damaging(0.581) TCGA-AD-6889-01 5 138728749 138728749 G - PROB1 Frame_Shift_Del p.A675Pfs*73 0.58 TCGA-AD-6889-01 5 139741431 139741432 - C SLC4A9 Frame_Shift_Ins p.L208Pfs*18 0.30 TCGA-AD-6889-01 5 140083576 140083576 C T ZMAT2 Missense_Mutation p.H104Y 0.45 deleterious(0) probably_damaging(0.989) TCGA-AD-6889-01 5 140229518 140229518 C T PCDHA9 Missense_Mutation p.R480W 0.09 tolerated_low_confidence(0.12) benign(0.003) TCGA-AD-6889-01 5 140242448 140242448 G A AC005609.1 Silent p.S176S 0.65 TCGA-AD-6889-01 5 140242843 140242843 G A AC005609.1 Missense_Mutation p.R45W 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.835) TCGA-AD-6889-01 5 140263604 140263604 C T PCDHA13 Missense_Mutation p.S584L 0.52 deleterious_low_confidence(0.04) benign(0.077) TCGA-AD-6889-01 5 140346484 140346484 C T PCDHAC2 Nonsense_Mutation p.R45* 0.07 TCGA-AD-6889-01 5 140475571 140475571 T C PCDHB2 Silent p.V399V 0.42 TCGA-AD-6889-01 5 140480345 140480346 - A PCDHB3 Frame_Shift_Ins p.E40Rfs*44 0.28 TCGA-AD-6889-01 5 140516182 140516182 C T PCDHB5 Missense_Mutation p.P389L 0.39 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-AD-6889-01 5 140554097 140554097 G A PCDHB7 Missense_Mutation p.V561M 0.47 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-AD-6889-01 5 140555044 140555044 C A PCDHB7 3'UTR 0.10 TCGA-AD-6889-01 5 140590335 140590335 C T PCDHB12 Missense_Mutation p.A619V 0.18 deleterious_low_confidence(0) benign(0.432) TCGA-AD-6889-01 5 140595573 140595573 C T PCDHB13 Silent p.T626T 0.58 TCGA-AD-6889-01 5 140627280 140627280 C T PCDHB15 Missense_Mutation p.R712W 0.43 deleterious_low_confidence(0.01) benign(0.154) TCGA-AD-6889-01 5 140744913 140744913 A G PCDHGA5 Missense_Mutation p.D339G 0.41 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-AD-6889-01 5 140751686 140751686 C T PCDHGB3 Silent p.F575F 0.47 TCGA-AD-6889-01 5 140794296 140794296 G A PCDHGA10 Silent p.L518L 0.48 TCGA-AD-6889-01 5 141019155 141019155 C T RELL2 Missense_Mutation p.R148C 0.58 deleterious(0) probably_damaging(0.919) TCGA-AD-6889-01 5 141020095 141020095 C - FCHSD1 3'UTR 0.29 TCGA-AD-6889-01 5 141059754 141059754 G A ARAP3 Silent p.T100T 0.35 TCGA-AD-6889-01 5 1414854 1414855 - C SLC6A3 Frame_Shift_Ins p.Y370Vfs*68 0.43 TCGA-AD-6889-01 5 14358331 14358331 C T TRIO Silent p.D697D 0.44 TCGA-AD-6889-01 5 14363962 14363962 T C TRIO Missense_Mutation p.M838T 0.40 benign(0.346) TCGA-AD-6889-01 5 145665677 145665677 A - RBM27 3'UTR 0.57 TCGA-AD-6889-01 5 145972549 145972550 CA - PPP2R2B Frame_Shift_Del p.W349Efs*26 0.40 TCGA-AD-6889-01 5 146030186 146030186 G A PPP2R2B Silent p.S186S 0.52 TCGA-AD-6889-01 5 146728377 146728377 G A STK32A Intron 0.58 TCGA-AD-6889-01 5 147889179 147889179 C T HTR4 Missense_Mutation p.G306R 0.41 deleterious(0.02) probably_damaging(0.974) TCGA-AD-6889-01 5 148388466 148388466 A G SH3TC2 Silent p.Y1142Y 0.55 TCGA-AD-6889-01 5 148743642 148743642 C T PCYOX1L Silent p.F113F 0.09 TCGA-AD-6889-01 5 148929652 148929652 G A CSNK1A1 Silent p.G72G 0.43 TCGA-AD-6889-01 5 1489889 1489889 C T LPCAT1 Missense_Mutation p.R193Q 0.45 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 5 149495484 149495484 A T PDGFRB Missense_Mutation p.S1055T 0.50 tolerated(0.15) benign(0.025) TCGA-AD-6889-01 5 150410296 150410296 T - TNIP1 Frame_Shift_Del p.N630Mfs*24 0.30 TCGA-AD-6889-01 5 150502504 150502504 G A ANXA6 Nonsense_Mutation p.Q403* 0.42 TCGA-AD-6889-01 5 150867584 150867584 C A SLC36A1 Silent p.I400I 0.13 TCGA-AD-6889-01 5 150924144 150924144 C A FAT2 Nonsense_Mutation p.E2182* 0.31 TCGA-AD-6889-01 5 150948242 150948242 G A FAT2 Missense_Mutation p.T84I 0.43 possibly_damaging(0.774) TCGA-AD-6889-01 5 151055763 151055763 C A SPARC Splice_Site 0.42 TCGA-AD-6889-01 5 151180345 151180345 G A G3BP1 Missense_Mutation p.R370H 0.48 tolerated(0.1) benign(0.002) TCGA-AD-6889-01 5 151784323 151784323 C A NMUR2 Missense_Mutation p.G118C 0.52 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 5 154346364 154346364 C A MRPL22 Silent p.P176P 0.51 TCGA-AD-6889-01 5 159680570 159680570 C A CCNJL Missense_Mutation p.G375C 0.57 tolerated(0.08) possibly_damaging(0.572) TCGA-AD-6889-01 5 159686665 159686665 G T CCNJL Missense_Mutation p.L180M 0.44 tolerated(0.16) possibly_damaging(0.505) TCGA-AD-6889-01 5 160061438 160061438 G A ATP10B Missense_Mutation p.T435M 0.42 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 5 160972293 160972293 G - GABRB2 Frame_Shift_Del p.V60Wfs*5 0.35 TCGA-AD-6889-01 5 162880962 162880962 A - NUDCD2 3'UTR 0.35 TCGA-AD-6889-01 5 162944559 162944559 G A MAT2B Intron 0.49 TCGA-AD-6889-01 5 167645334 167645334 A G TENM2 Missense_Mutation p.I1480V 0.14 deleterious(0.03) benign(0.027) TCGA-AD-6889-01 5 167674912 167674912 A G TENM2 Missense_Mutation p.Y2323C 0.52 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 5 169186717 169186717 T G DOCK2 Silent p.A795A 0.46 TCGA-AD-6889-01 5 169435730 169435730 G A DOCK2 Missense_Mutation p.R1071H 0.40 deleterious(0.01) possibly_damaging(0.506) TCGA-AD-6889-01 5 169472840 169472840 T C DOCK2 Silent p.S1299S 0.51 TCGA-AD-6889-01 5 169533382 169533382 G A FOXI1 Missense_Mutation p.D141N 0.41 tolerated(0.09) possibly_damaging(0.899) TCGA-AD-6889-01 5 170722928 170722928 A C RANBP17 Missense_Mutation p.Q1027P 0.50 deleterious(0.02) benign(0.003) TCGA-AD-6889-01 5 171517345 171517345 T - STK10 Frame_Shift_Del p.T526Pfs*15 0.34 TCGA-AD-6889-01 5 174870389 174870389 G A DRD1 5'UTR 0.45 TCGA-AD-6889-01 5 175523888 175523888 G A FAM153B Silent p.L65L 0.21 TCGA-AD-6889-01 5 176729434 176729434 G A RAB24 Missense_Mutation p.R133C 0.50 tolerated(0.05) possibly_damaging(0.717) TCGA-AD-6889-01 5 176885119 176885119 C T DBN1 Silent p.E574E 0.16 TCGA-AD-6889-01 5 176938918 176938918 G A DDX41 Silent p.G581G 0.17 TCGA-AD-6889-01 5 176939371 176939371 G A DDX41 Missense_Mutation p.R525C 0.39 deleterious(0.01) benign(0.042) TCGA-AD-6889-01 5 178418987 178418987 G A GRM6 Missense_Mutation p.A201V 0.21 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 5 178541281 178541281 C - ADAMTS2 Frame_Shift_Del p.V1075Sfs*32 0.28 TCGA-AD-6889-01 5 178564930 178564930 G A ADAMTS2 Silent p.G597G 0.43 TCGA-AD-6889-01 5 179193282 179193282 C G MAML1 Missense_Mutation p.P424R 0.32 deleterious(0) possibly_damaging(0.69) TCGA-AD-6889-01 5 179193360 179193360 C T MAML1 Missense_Mutation p.A450V 0.34 tolerated(0.09) benign(0.206) TCGA-AD-6889-01 5 179739488 179739488 G A GFPT2 Silent p.D496D 0.45 TCGA-AD-6889-01 5 180338425 180338425 C A BTNL8 Silent p.R162R 0.51 TCGA-AD-6889-01 5 180486569 180486569 G A BTNL9 Missense_Mutation p.A439T 0.53 tolerated(0.24) possibly_damaging(0.683) TCGA-AD-6889-01 5 1881937 1881937 G A IRX4 Silent p.S94S 0.49 TCGA-AD-6889-01 5 23527461 23527461 G A PRDM9 Missense_Mutation p.R755Q 0.40 tolerated(0.27) probably_damaging(0.998) TCGA-AD-6889-01 5 31521250 31521250 T - DROSHA Frame_Shift_Del p.E310Sfs*42 0.28 TCGA-AD-6889-01 5 32088487 32088487 C T PDZD2 Missense_Mutation p.P1645S 0.43 tolerated(0.28) benign(0.009) TCGA-AD-6889-01 5 34687701 34687702 - T RAI14 Intron 0.32 TCGA-AD-6889-01 5 34922853 34922853 C T BRIX1 Missense_Mutation p.P164S 0.08 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 5 35618146 35618146 C T SPEF2 Missense_Mutation p.S16F 0.43 deleterious(0) benign(0.426) TCGA-AD-6889-01 5 36143290 36143290 C G LMBRD2 Silent p.L54L 0.42 TCGA-AD-6889-01 5 37065070 37065070 A - NIPBL 3'UTR 0.81 TCGA-AD-6889-01 5 38407192 38407192 G - EGFLAM Frame_Shift_Del p.G366Afs*32 0.41 TCGA-AD-6889-01 5 41912200 41912200 A G C5orf51 Silent p.L172L 0.40 TCGA-AD-6889-01 5 433966 433966 A G AHRR Splice_Site p.X393_splice 0.53 TCGA-AD-6889-01 5 482218 482218 G A SLC9A3 Missense_Mutation p.R471W 0.56 deleterious(0) possibly_damaging(0.816) TCGA-AD-6889-01 5 52227943 52227943 T C ITGA1 Silent p.Y946Y 0.36 TCGA-AD-6889-01 5 53752149 53752149 A G HSPB3 3'UTR 0.52 TCGA-AD-6889-01 5 60188320 60188320 G A ERCC8 Intron 0.37 TCGA-AD-6889-01 5 65105915 65105915 A G NLN Missense_Mutation p.H589R 0.40 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 5 65374370 65374370 A - ERBB2IP 3'UTR 0.36 TCGA-AD-6889-01 5 65465943 65465943 A - SREK1 Frame_Shift_Del p.K357Nfs*34 0.30 TCGA-AD-6889-01 5 6652014 6652014 C T SRD5A1 Missense_Mutation p.T118I 0.52 tolerated(0.29) benign(0.004) TCGA-AD-6889-01 5 68710114 68710114 A G RAD17 Missense_Mutation p.T681A 0.42 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AD-6889-01 5 70797446 70797446 G C BDP1 Missense_Mutation p.E672Q 0.40 deleterious(0.01) benign(0.401) TCGA-AD-6889-01 5 70849103 70849103 C T BDP1 Missense_Mutation p.R2386C 0.36 tolerated(0.12) benign(0) TCGA-AD-6889-01 5 71522028 71522028 T C MRPS27 Splice_Site p.X232_splice 0.40 TCGA-AD-6889-01 5 72377621 72377621 T C FCHO2 Silent p.N664N 0.43 TCGA-AD-6889-01 5 73072480 73072480 C G ARHGEF28 Missense_Mutation p.L267V 0.46 tolerated(0.06) benign(0.334) TCGA-AD-6889-01 5 74078861 74078861 A G FAM169A Silent p.D453D 0.41 TCGA-AD-6889-01 5 76717794 76717794 C G PDE8B Missense_Mutation p.S800C 0.39 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 5 78417094 78417094 C T BHMT Silent p.S177S 0.46 TCGA-AD-6889-01 5 7867038 7867039 - T FASTKD3 Frame_Shift_Ins p.P387Tfs*44 0.30 TCGA-AD-6889-01 5 79031780 79031780 A - CMYA5 Frame_Shift_Del p.N2399Ifs*16 0.30 TCGA-AD-6889-01 5 79817895 79817895 C T FAM151B Silent p.V203V 0.44 TCGA-AD-6889-01 5 79966082 79966082 G A MSH3 Missense_Mutation p.C249Y 0.49 deleterious(0) possibly_damaging(0.616) TCGA-AD-6889-01 5 82808328 82808328 G A VCAN Intron 0.50 TCGA-AD-6889-01 5 88056859 88056859 T - MEF2C Frame_Shift_Del p.K134Nfs*12 0.30 TCGA-AD-6889-01 5 884136 884136 C T BRD9 Missense_Mutation p.A295T 0.53 tolerated(0.1) possibly_damaging(0.743) TCGA-AD-6889-01 5 89921010 89921010 C - GPR98 Frame_Shift_Del p.P209Lfs*6 0.32 TCGA-AD-6889-01 5 90016873 90016873 A G GPR98 Missense_Mutation p.M3249V 0.40 benign(0.067) TCGA-AD-6889-01 5 9197385 9197385 G T SEMA5A Silent p.V321V 0.45 TCGA-AD-6889-01 5 93788720 93788720 A - KIAA0825 Frame_Shift_Del p.F767Lfs*27 0.32 TCGA-AD-6889-01 5 94050578 94050578 T - MCTP1 Frame_Shift_Del p.K875Rfs*4 0.32 TCGA-AD-6889-01 5 96121568 96121568 G T ERAP1 Missense_Mutation p.L623I 0.47 tolerated(0.05) probably_damaging(0.983) TCGA-AD-6889-01 5 96122248 96122248 A C ERAP1 Missense_Mutation p.L562R 0.42 deleterious(0) possibly_damaging(0.856) TCGA-AD-6889-01 6 100061181 100061181 C T PRDM13 Missense_Mutation p.R224W 0.67 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AD-6889-01 6 100061882 100061882 C T PRDM13 Silent p.A457A 0.43 TCGA-AD-6889-01 6 102247582 102247583 - C GRIK2 Frame_Shift_Ins p.Q339Pfs*10 0.34 TCGA-AD-6889-01 6 10557410 10557410 C - GCNT2 Intron 0.32 TCGA-AD-6889-01 6 10586243 10586244 - T GCNT2 Intron 0.32 TCGA-AD-6889-01 6 107391505 107391505 C T BEND3 Missense_Mutation p.R297H 0.33 deleterious(0.01) possibly_damaging(0.839) TCGA-AD-6889-01 6 108372297 108372297 T - OSTM1 Frame_Shift_Del p.M241* 0.31 TCGA-AD-6889-01 6 10874558 10874559 - G GCM2 Frame_Shift_Ins p.A398Cfs*6 0.32 TCGA-AD-6889-01 6 108985662 108985662 C T FOXO3 Silent p.G542G 0.37 TCGA-AD-6889-01 6 111409145 111409145 C - SLC16A10 Frame_Shift_Del p.E66Rfs*8 0.54 TCGA-AD-6889-01 6 116836954 116836954 T - FAM26E Frame_Shift_Del p.F246Lfs*75 0.35 TCGA-AD-6889-01 6 116981912 116981913 - T ZUFSP Frame_Shift_Ins p.N219Kfs*9 0.29 TCGA-AD-6889-01 6 117248538 117248538 C T RFX6 Missense_Mutation p.A745V 0.45 deleterious_low_confidence(0.02) benign(0.005) TCGA-AD-6889-01 6 123319247 123319247 G A CLVS2 Missense_Mutation p.A109T 0.37 tolerated(0.45) benign(0.027) TCGA-AD-6889-01 6 124125338 124125338 C T NKAIN2 5'UTR 0.56 TCGA-AD-6889-01 6 129601285 129601285 T G LAMA2 Missense_Mutation p.C844G 0.40 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 6 129634198 129634198 A - LAMA2 Frame_Shift_Del p.K1124Nfs*15 0.26 TCGA-AD-6889-01 6 129762070 129762072 GAA - LAMA2 In_Frame_Del p.K2067del 0.41 TCGA-AD-6889-01 6 130467265 130467265 A - SAMD3 Frame_Shift_Del p.L362Wfs*9 0.33 TCGA-AD-6889-01 6 130476012 130476012 C A SAMD3 Missense_Mutation p.K327N 0.05 deleterious(0.03) benign(0.282) TCGA-AD-6889-01 6 130505305 130505305 G A SAMD3 Silent p.D199D 0.10 TCGA-AD-6889-01 6 131908784 131908784 A T MED23 3'UTR 0.45 TCGA-AD-6889-01 6 135254039 135254039 G T ALDH8A1 Missense_Mutation p.L242M 0.27 tolerated(0.14) benign(0.043) TCGA-AD-6889-01 6 135787349 135787349 C A AHI1 Nonsense_Mutation p.E118* 0.41 TCGA-AD-6889-01 6 13615812 13615812 G A NOL7 Silent p.A74A 0.55 TCGA-AD-6889-01 6 136564055 136564055 A C MTFR2 Silent p.S75S 0.34 TCGA-AD-6889-01 6 136704883 136704883 G A MAP7 Missense_Mutation p.S210L 0.44 deleterious(0) probably_damaging(0.983) TCGA-AD-6889-01 6 137234717 137234717 A C PEX7 3'UTR 0.39 TCGA-AD-6889-01 6 137243614 137243614 C T SLC35D3 Silent p.I16I 0.37 TCGA-AD-6889-01 6 137814585 137814585 G A OLIG3 Silent p.C241C 0.53 TCGA-AD-6889-01 6 138751900 138751900 G - NHSL1 Frame_Shift_Del p.I1199Ffs*26 0.28 TCGA-AD-6889-01 6 138752699 138752699 G - NHSL1 Frame_Shift_Del p.P932Rfs*70 0.12 TCGA-AD-6889-01 6 143091031 143091031 G - HIVEP2 Frame_Shift_Del p.S1616Afs*32 0.36 TCGA-AD-6889-01 6 146127468 146127468 C T FBXO30 Missense_Mutation p.G25E 0.42 deleterious(0.05) probably_damaging(0.964) TCGA-AD-6889-01 6 148854102 148854102 G T SASH1 Missense_Mutation p.K578N 0.56 deleterious(0.01) probably_damaging(0.971) TCGA-AD-6889-01 6 150001188 150001188 G A LATS1 Nonsense_Mutation p.R806* 0.39 TCGA-AD-6889-01 6 150158535 150158535 C T LRP11 Silent p.T326T 0.41 TCGA-AD-6889-01 6 152555016 152555016 T - SYNE1 Frame_Shift_Del p.K6871Rfs*22 0.35 TCGA-AD-6889-01 6 155153706 155153706 A - SCAF8 Frame_Shift_Del p.R1000Gfs*22 0.35 TCGA-AD-6889-01 6 15524703 15524703 G T DTNBP1 Intron 0.40 TCGA-AD-6889-01 6 155775982 155775982 C T NOX3 Missense_Mutation p.S73N 0.12 deleterious(0) possibly_damaging(0.784) TCGA-AD-6889-01 6 157739925 157739925 C T TMEM242 Silent p.P72P 0.46 TCGA-AD-6889-01 6 158049440 158049440 T - ZDHHC14 Frame_Shift_Del p.Y211Ifs*10 0.12 TCGA-AD-6889-01 6 158923159 158923160 - C TULP4 Frame_Shift_Ins p.Q824Pfs*63 0.41 TCGA-AD-6889-01 6 159026359 159026359 G A TMEM181 Missense_Mutation p.V322M 0.47 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 6 160198450 160198450 A G ACAT2 Missense_Mutation p.I292V 0.41 tolerated(0.33) benign(0.007) TCGA-AD-6889-01 6 160468859 160468859 C A IGF2R Nonsense_Mutation p.Y755* 0.39 TCGA-AD-6889-01 6 160831832 160831832 G A SLC22A3 Missense_Mutation p.R310H 0.44 tolerated(1) benign(0.002) TCGA-AD-6889-01 6 161134154 161134154 G A PLG Missense_Mutation p.E182K 0.47 deleterious(0.04) possibly_damaging(0.598) TCGA-AD-6889-01 6 161469829 161469829 A - MAP3K4 Frame_Shift_Del p.K177Nfs*30 0.32 TCGA-AD-6889-01 6 16327894 16327894 C A ATXN1 Missense_Mutation p.Q216H 0.34 tolerated_low_confidence(0.18) benign(0.02) TCGA-AD-6889-01 6 16327900 16327900 C A ATXN1 Missense_Mutation p.Q214H 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-AD-6889-01 6 165715105 165715105 A G C6orf118 Missense_Mutation p.F236L 0.48 tolerated(0.12) benign(0.176) TCGA-AD-6889-01 6 166576059 166576059 A C T Silent p.P260P 0.10 TCGA-AD-6889-01 6 166833415 166833415 C T RPS6KA2 Missense_Mutation p.C600Y 0.41 deleterious(0) probably_damaging(0.996) TCGA-AD-6889-01 6 167549617 167549617 C T CCR6 5'UTR 0.42 TCGA-AD-6889-01 6 168465559 168465559 G T FRMD1 Missense_Mutation p.P214T 0.46 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 6 168709600 168709600 C T DACT2 Silent p.L279L 0.54 TCGA-AD-6889-01 6 170104397 170104397 G A C6orf120 3'UTR 0.46 TCGA-AD-6889-01 6 170173476 170173476 C T ERMARD Missense_Mutation p.P432L 0.45 deleterious(0.01) possibly_damaging(0.683) TCGA-AD-6889-01 6 18222350 18222350 G A KDM1B 3'UTR 0.42 TCGA-AD-6889-01 6 20481625 20481627 AAG - E2F3 In_Frame_Del p.K234del 0.44 TCGA-AD-6889-01 6 24580179 24580179 C T KIAA0319 Splice_Site p.X427_splice 0.42 TCGA-AD-6889-01 6 25110233 25110233 C T CMAHP RNA 0.53 TCGA-AD-6889-01 6 25813137 25813137 C T SLC17A1 Silent p.T273T 0.43 TCGA-AD-6889-01 6 28227127 28227127 C T NKAPL 5'UTR 0.38 TCGA-AD-6889-01 6 28268928 28268928 A G PGBD1 Missense_Mutation p.N433D 0.45 tolerated(0.19) possibly_damaging(0.575) TCGA-AD-6889-01 6 29342843 29342843 C A OR12D3 Silent p.V74V 0.41 TCGA-AD-6889-01 6 29796367 29796367 G A HLA-G Missense_Mutation p.G131R 0.13 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-AD-6889-01 6 29912019 29912019 A G HLA-A Missense_Mutation p.D247G 0.21 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AD-6889-01 6 30657966 30657967 - G NRM Frame_Shift_Ins p.L63Pfs*21 0.35 TCGA-AD-6889-01 6 30697813 30697813 C T FLOT1 Missense_Mutation p.V414M 0.38 deleterious(0) possibly_damaging(0.828) TCGA-AD-6889-01 6 31239048 31239048 C T HLA-C Missense_Mutation p.A141T 0.20 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-AD-6889-01 6 31661208 31661208 C A ABHD16A Missense_Mutation p.R144M 0.31 tolerated(0.08) possibly_damaging(0.533) TCGA-AD-6889-01 6 31692688 31692688 G A C6orf25 Intron 0.40 TCGA-AD-6889-01 6 31842534 31842535 - T SLC44A4 Frame_Shift_Ins p.N144Kfs*55 0.30 TCGA-AD-6889-01 6 31996952 31996952 C A C4B Silent p.S1171S 0.51 TCGA-AD-6889-01 6 32053832 32053832 G A TNXB Missense_Mutation p.T948M 0.13 probably_damaging(0.997) TCGA-AD-6889-01 6 32063630 32063630 C T TNXB Missense_Mutation p.C667Y 0.54 probably_damaging(0.983) TCGA-AD-6889-01 6 32797242 32797242 G A TAP2 Nonsense_Mutation p.R623* 0.29 TCGA-AD-6889-01 6 32803531 32803531 G A TAP2 Nonsense_Mutation p.R210* 0.54 TCGA-AD-6889-01 6 33162585 33162585 A G RXRB Silent p.R496R 0.42 TCGA-AD-6889-01 6 33164224 33164224 C - RXRB Frame_Shift_Del p.G327Vfs*10 0.36 TCGA-AD-6889-01 6 33283645 33283645 C - ZBTB22 Frame_Shift_Del p.G350Efs*9 0.36 TCGA-AD-6889-01 6 33284713 33284713 C - ZBTB22 5'UTR 0.45 TCGA-AD-6889-01 6 33643509 33643509 G A ITPR3 Missense_Mutation p.R1053H 0.49 deleterious(0) probably_damaging(0.99) TCGA-AD-6889-01 6 33644692 33644692 G A ITPR3 Missense_Mutation p.A1144T 0.40 tolerated(0.49) benign(0.001) TCGA-AD-6889-01 6 33650365 33650365 T C ITPR3 Missense_Mutation p.L1514P 0.46 tolerated(0.12) benign(0.034) TCGA-AD-6889-01 6 34208627 34208627 C T HMGA1 Missense_Mutation p.R24W 0.09 deleterious(0.05) possibly_damaging(0.898) TCGA-AD-6889-01 6 34855774 34855774 C T TAF11 5'UTR 0.58 TCGA-AD-6889-01 6 348862 348862 C T DUSP22 Intron 0.22 TCGA-AD-6889-01 6 351030 351030 A T DUSP22 3'UTR 0.19 TCGA-AD-6889-01 6 35259373 35259373 C T ZNF76 Missense_Mutation p.R264C 0.34 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 6 35473878 35473878 G - TULP1 Frame_Shift_Del p.Q301Rfs*9 0.38 TCGA-AD-6889-01 6 35587956 35587956 C T FKBP5 Missense_Mutation p.A116T 0.39 tolerated(0.15) benign(0.001) TCGA-AD-6889-01 6 37140778 37140778 G A PIM1 Missense_Mutation p.R205Q 0.32 deleterious(0.02) possibly_damaging(0.899) TCGA-AD-6889-01 6 37281660 37281660 G A TBC1D22B Silent p.R386R 0.48 TCGA-AD-6889-01 6 37403454 37403454 A - CMTR1 Frame_Shift_Del p.R19Efs*7 0.29 TCGA-AD-6889-01 6 37442376 37442376 G A CMTR1 Missense_Mutation p.R633Q 0.52 tolerated(0.07) benign(0.079) TCGA-AD-6889-01 6 3850359 3850359 G A FAM50B Missense_Mutation p.R105Q 0.40 tolerated(0.13) benign(0.096) TCGA-AD-6889-01 6 38883039 38883039 G T DNAH8 Missense_Mutation p.E3125D 0.45 benign(0.266) TCGA-AD-6889-01 6 39688547 39688547 A G KIF6 Missense_Mutation p.L36S 0.45 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 6 40400521 40400521 C T LRFN2 Missense_Mutation p.R111Q 0.52 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 6 4069711 4069711 G T FAM217A Missense_Mutation p.P249H 0.38 deleterious(0) probably_damaging(0.995) TCGA-AD-6889-01 6 40996109 40996109 C T UNC5CL 3'UTR 0.33 TCGA-AD-6889-01 6 40996183 40996183 C T UNC5CL Missense_Mutation p.G496S 0.23 tolerated_low_confidence(1) benign(0) TCGA-AD-6889-01 6 41060658 41060658 C A NFYA Missense_Mutation p.P241H 0.29 deleterious(0) probably_damaging(0.974) TCGA-AD-6889-01 6 42130746 42130746 C T RP1-139D8.6 Missense_Mutation p.A48V 0.53 tolerated_low_confidence(0.1) benign(0.011) TCGA-AD-6889-01 6 42832929 42832929 C T GLTSCR1L Silent p.G995G 0.32 TCGA-AD-6889-01 6 42936640 42936640 C T PEX6 Missense_Mutation p.C484Y 0.33 deleterious(0) probably_damaging(0.979) TCGA-AD-6889-01 6 42957352 42957352 C - PPP2R5D Frame_Shift_Del p.K13Rfs*94 0.27 TCGA-AD-6889-01 6 43466717 43466717 C T TJAP1 5'UTR 0.54 TCGA-AD-6889-01 6 46129277 46129277 A T ENPP5 Missense_Mutation p.V407D 0.38 tolerated(0.49) benign(0.015) TCGA-AD-6889-01 6 4937867 4937867 C T CDYL Silent p.S339S 0.43 TCGA-AD-6889-01 6 49427047 49427047 C T MUT Missense_Mutation p.A45T 0.46 tolerated_low_confidence(0.15) benign(0.001) TCGA-AD-6889-01 6 49676854 49676854 G A CRISP2 Missense_Mutation p.A19V 0.39 tolerated(0.15) benign(0.146) TCGA-AD-6889-01 6 50682972 50682972 C A TFAP2D Silent p.S61S 0.48 TCGA-AD-6889-01 6 52269005 52269005 G A PAQR8 Missense_Mutation p.A332T 0.50 tolerated(0.52) benign(0.001) TCGA-AD-6889-01 6 54791223 54791223 G A FAM83B Missense_Mutation p.V167I 0.09 tolerated(0.1) benign(0.117) TCGA-AD-6889-01 6 54805296 54805296 G A FAM83B Silent p.P509P 0.44 TCGA-AD-6889-01 6 55378899 55378899 T C HMGCLL1 Silent p.G193G 0.33 TCGA-AD-6889-01 6 57048609 57048609 G A BAG2 Missense_Mutation p.R86H 0.42 deleterious(0) probably_damaging(0.996) TCGA-AD-6889-01 6 62390775 62390775 A - KHDRBS2 3'UTR 0.23 TCGA-AD-6889-01 6 69703693 69703693 C T BAI3 Silent p.L590L 0.52 TCGA-AD-6889-01 6 71003997 71003999 CTC - COL9A1 In_Frame_Del p.R189del 0.46 TCGA-AD-6889-01 6 72596672 72596672 G A RIMS1 5'Flank 0.50 TCGA-AD-6889-01 6 74078536 74078536 G A OOEP Missense_Mutation p.P141S 0.49 tolerated(0.2) benign(0.058) TCGA-AD-6889-01 6 74161692 74161692 C T MB21D1 Silent p.R71R 0.53 TCGA-AD-6889-01 6 75965691 75965692 - T TMEM30A 3'UTR 0.36 TCGA-AD-6889-01 6 76023206 76023206 C T FILIP1 Missense_Mutation p.R781H 0.50 tolerated(0.2) probably_damaging(0.964) TCGA-AD-6889-01 6 76376615 76376615 A G SENP6 Silent p.L394L 0.36 TCGA-AD-6889-01 6 76633367 76633367 T - IMPG1 Frame_Shift_Del p.N767Ifs*7 0.26 TCGA-AD-6889-01 6 76660585 76660585 G A IMPG1 Silent p.S506S 0.41 TCGA-AD-6889-01 6 79655055 79655055 G A PHIP Missense_Mutation p.A1597V 0.32 tolerated_low_confidence(0.38) benign(0.006) TCGA-AD-6889-01 6 83889536 83889536 A G PGM3 Missense_Mutation p.L341P 0.52 deleterious(0) probably_damaging(0.982) TCGA-AD-6889-01 6 84350910 84350911 - A SNAP91 Frame_Shift_Ins p.E224* 0.30 TCGA-AD-6889-01 6 87725456 87725456 C T HTR1E Missense_Mutation p.T135M 0.42 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 6 87971188 87971188 A G ZNF292 Missense_Mutation p.H2614R 0.09 tolerated(0.09) possibly_damaging(0.616) TCGA-AD-6889-01 6 90411765 90411765 G A MDN1 Missense_Mutation p.R2722W 0.49 benign(0.007) TCGA-AD-6889-01 6 90661193 90661193 T C BACH2 Missense_Mutation p.D211G 0.37 tolerated(0.26) benign(0.001) TCGA-AD-6889-01 6 96654334 96654334 T - FUT9 3'UTR 0.39 TCGA-AD-6889-01 6 99857200 99857200 T C PNISR Silent p.P174P 0.48 TCGA-AD-6889-01 6 99858807 99858807 G - PNISR Frame_Shift_Del p.P104Lfs*58 0.36 TCGA-AD-6889-01 7 100001810 100001810 C - ZCWPW1 Frame_Shift_Del p.E437Kfs*10 0.33 TCGA-AD-6889-01 7 100276494 100276494 G T GNB2 3'UTR 0.50 TCGA-AD-6889-01 7 100280309 100280309 C T GIGYF1 Missense_Mutation p.S835N 0.35 tolerated(1) possibly_damaging(0.535) TCGA-AD-6889-01 7 100815318 100815319 - G NAT16 3'UTR 0.33 TCGA-AD-6889-01 7 100841925 100841925 C T MOGAT3 Missense_Mutation p.D159N 0.22 deleterious(0.04) benign(0.219) TCGA-AD-6889-01 7 100860504 100860504 G A PLOD3 Silent p.L18L 0.47 TCGA-AD-6889-01 7 102574320 102574320 C T LRRC17 5'UTR 0.38 TCGA-AD-6889-01 7 102743751 102743752 AT - NAPEPLD 3'UTR 0.27 TCGA-AD-6889-01 7 103113351 103113351 G A RELN Missense_Mutation p.R3431C 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.772) TCGA-AD-6889-01 7 103214553 103214553 G A RELN Silent p.D1499D 0.46 TCGA-AD-6889-01 7 104746985 104746985 A - KMT2E Frame_Shift_Del p.K873Nfs*8 0.34 TCGA-AD-6889-01 7 105111209 105111209 T - PUS7 Frame_Shift_Del p.R442Gfs*16 0.35 TCGA-AD-6889-01 7 105248235 105248235 C A ATXN7L1 3'UTR 0.53 TCGA-AD-6889-01 7 105672843 105672843 C T CDHR3 Silent p.T786T 0.37 TCGA-AD-6889-01 7 106508498 106508498 C T PIK3CG Silent p.D164D 0.39 TCGA-AD-6889-01 7 107591718 107591718 C T LAMB1 Missense_Mutation p.S1115N 0.45 tolerated(0.12) benign(0.007) TCGA-AD-6889-01 7 10977771 10977771 C T NDUFA4 Nonsense_Mutation p.W45* 0.58 TCGA-AD-6889-01 7 1132675 1132675 T C GPER1 3'UTR 0.36 TCGA-AD-6889-01 7 115580506 115580506 A - TFEC 3'UTR 0.57 TCGA-AD-6889-01 7 116165017 116165017 T - CAV1 5'UTR 0.93 TCGA-AD-6889-01 7 116418874 116418876 ATC - MET In_Frame_Del p.I1148del 0.40 TCGA-AD-6889-01 7 116859143 116859143 C T ST7 Missense_Mutation p.R471W 0.24 deleterious(0) probably_damaging(0.939) TCGA-AD-6889-01 7 117267716 117267716 C T CFTR Silent p.I1203I 0.32 TCGA-AD-6889-01 7 12419114 12419115 - A VWDE Frame_Shift_Ins p.A290Cfs*4 0.29 TCGA-AD-6889-01 7 127732229 127732229 A C SND1 3'UTR 0.60 TCGA-AD-6889-01 7 128470659 128470659 C A FLNC 5'UTR 0.34 TCGA-AD-6889-01 7 128487758 128487758 G A FLNC Silent p.P1432P 0.32 TCGA-AD-6889-01 7 130025046 130025046 G A CPA1 Missense_Mutation p.E283K 0.40 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 7 132192577 132192577 G T PLXNA4 Silent p.S292S 0.50 TCGA-AD-6889-01 7 134613526 134613526 C T CALD1 Silent p.D31D 0.41 TCGA-AD-6889-01 7 139229096 139229096 G T CLEC2L 3'UTR 0.50 TCGA-AD-6889-01 7 140221766 140221766 G A DENND2A Missense_Mutation p.R934C 0.12 deleterious(0) benign(0.344) TCGA-AD-6889-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-AD-6889-01 7 142659350 142659350 G T KEL 5'UTR 0.35 TCGA-AD-6889-01 7 143632531 143632531 T C OR2F2 Missense_Mutation p.V69A 0.33 tolerated(0.34) benign(0.15) TCGA-AD-6889-01 7 147600656 147600656 G T CNTNAP2 Splice_Site p.X700_splice 0.35 TCGA-AD-6889-01 7 148876153 148876153 C - ZNF398 Frame_Shift_Del p.T399Pfs*68 0.34 TCGA-AD-6889-01 7 149152797 149152797 G T ZNF777 Missense_Mutation p.P106Q 0.32 deleterious_low_confidence(0.02) benign(0.344) TCGA-AD-6889-01 7 149171421 149171421 G A ZNF746 3'UTR 0.47 TCGA-AD-6889-01 7 149171703 149171703 G A ZNF746 Silent p.T570T 0.42 TCGA-AD-6889-01 7 149483304 149483304 G T SSPO RNA 0.33 TCGA-AD-6889-01 7 149485459 149485459 C - SSPO RNA 0.32 TCGA-AD-6889-01 7 149500088 149500088 G - SSPO RNA 0.44 TCGA-AD-6889-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.34 TCGA-AD-6889-01 7 150704217 150704217 G T NOS3 Silent p.R655R 0.24 TCGA-AD-6889-01 7 150747234 150747234 C T ASIC3 Silent p.G192G 0.50 TCGA-AD-6889-01 7 151164247 151164247 G A RHEB Silent p.D171D 0.38 TCGA-AD-6889-01 7 1513225 1513225 C T INTS1 Silent p.L1978L 0.46 TCGA-AD-6889-01 7 153584597 153584597 C T DPP6 5'UTR 0.40 TCGA-AD-6889-01 7 153584687 153584687 C T DPP6 5'UTR 0.36 TCGA-AD-6889-01 7 154875913 154875913 G A HTR5A Missense_Mutation p.A264T 0.44 tolerated(0.1) benign(0.013) TCGA-AD-6889-01 7 155604765 155604765 C T SHH Missense_Mutation p.V18I 0.49 tolerated(0.23) unknown(0) TCGA-AD-6889-01 7 157475517 157475517 C T PTPRN2 Missense_Mutation p.G634D 0.39 deleterious(0.01) possibly_damaging(0.86) TCGA-AD-6889-01 7 1590467 1590467 C A TMEM184A Missense_Mutation p.R124L 0.59 tolerated(0.05) possibly_damaging(0.669) TCGA-AD-6889-01 7 17855898 17855898 T C SNX13 Silent p.S620S 0.33 TCGA-AD-6889-01 7 1786012 1786012 G A ELFN1 Missense_Mutation p.A594T 0.30 tolerated(0.1) benign(0.197) TCGA-AD-6889-01 7 21737770 21737770 G A DNAH11 Missense_Mutation p.R2047H 0.36 probably_damaging(0.982) TCGA-AD-6889-01 7 21946004 21946004 G A CDCA7L Missense_Mutation p.A275V 0.40 deleterious(0) probably_damaging(0.992) TCGA-AD-6889-01 7 22478141 22478141 T - STEAP1B Frame_Shift_Del p.D333Tfs*5 0.36 TCGA-AD-6889-01 7 23381749 23381749 A C IGF2BP3 Silent p.T379T 0.38 TCGA-AD-6889-01 7 23561888 23561888 A - TRA2A Intron 0.47 TCGA-AD-6889-01 7 26245989 26245989 A - CBX3 Frame_Shift_Del p.M11Wfs*26 0.31 TCGA-AD-6889-01 7 2625935 2625936 AG - IQCE Frame_Shift_Del p.N308Pfs*172 0.17 TCGA-AD-6889-01 7 26678911 26678911 G A C7orf71 Missense_Mutation p.G50R 0.17 tolerated_low_confidence(0.75) benign(0) TCGA-AD-6889-01 7 27181631 27181633 CTT - HOXA5 In_Frame_Del p.K212del 0.50 TCGA-AD-6889-01 7 27204577 27204577 T C HOXA9 Missense_Mutation p.E167G 0.44 tolerated(0.24) benign(0.188) TCGA-AD-6889-01 7 2946277 2946277 G A CARD11 Silent p.L1154L 0.41 TCGA-AD-6889-01 7 2955004 2955004 G A CARD11 Silent p.F902F 0.38 TCGA-AD-6889-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.35 TCGA-AD-6889-01 7 30491556 30491556 T C NOD1 Missense_Mutation p.M493V 0.40 tolerated(0.16) benign(0.002) TCGA-AD-6889-01 7 34867157 34867157 C T NPSR1 Missense_Mutation p.T208I 0.49 tolerated(0.18) benign(0.017) TCGA-AD-6889-01 7 38816280 38816281 - T VPS41 Frame_Shift_Ins p.T294Nfs*10 0.30 TCGA-AD-6889-01 7 39472764 39472764 C - POU6F2 Frame_Shift_Del p.Q374Sfs*22 0.37 TCGA-AD-6889-01 7 42004974 42004974 T C GLI3 Missense_Mutation p.N1233D 0.45 tolerated_low_confidence(0.27) benign(0.009) TCGA-AD-6889-01 7 42079730 42079730 G A GLI3 Missense_Mutation p.T312M 0.39 deleterious(0) probably_damaging(0.97) TCGA-AD-6889-01 7 42188011 42188011 G A GLI3 Nonsense_Mutation p.Q61* 0.42 TCGA-AD-6889-01 7 44612541 44612541 G - DDX56 Frame_Shift_Del p.R111Gfs*21 0.29 TCGA-AD-6889-01 7 47342828 47342828 C A TNS3 Silent p.G1059G 0.34 TCGA-AD-6889-01 7 47342836 47342836 C A TNS3 Missense_Mutation p.A1057S 0.48 tolerated(0.49) benign(0.045) TCGA-AD-6889-01 7 47384426 47384426 C T TNS3 Silent p.A859A 0.37 TCGA-AD-6889-01 7 47882666 47882666 T - PKD1L1 Frame_Shift_Del p.K1780Rfs*33 0.26 TCGA-AD-6889-01 7 47886639 47886639 T C PKD1L1 Missense_Mutation p.D1664G 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-AD-6889-01 7 47898367 47898367 G A PKD1L1 Silent p.L1422L 0.42 TCGA-AD-6889-01 7 48142906 48142906 A C UPP1 Missense_Mutation p.I112L 0.13 deleterious(0.02) benign(0.136) TCGA-AD-6889-01 7 4825194 4825194 G A AP5Z1 Silent p.R337R 0.10 TCGA-AD-6889-01 7 4830445 4830445 C - AP5Z1 Frame_Shift_Del p.Q696Rfs*6 0.40 TCGA-AD-6889-01 7 4841483 4841484 - G RADIL Frame_Shift_Ins p.G882Wfs*32 0.41 TCGA-AD-6889-01 7 51092909 51092909 G A COBL Missense_Mutation p.T1222M 0.41 tolerated(0.1) benign(0.014) TCGA-AD-6889-01 7 51096762 51096762 G A COBL Silent p.N677N 0.14 TCGA-AD-6889-01 7 51111352 51111352 C T COBL Silent p.P378P 0.37 TCGA-AD-6889-01 7 6369282 6369282 G T FAM220A 3'UTR 0.33 TCGA-AD-6889-01 7 64388313 64388313 A G ZNF273 Missense_Mutation p.K203E 0.38 tolerated(0.43) benign(0.257) TCGA-AD-6889-01 7 65705895 65705895 T - TPST1 Frame_Shift_Del p.F162Lfs*3 0.31 TCGA-AD-6889-01 7 70853384 70853384 G A WBSCR17 Missense_Mutation p.E196K 0.41 deleterious(0.03) benign(0.141) TCGA-AD-6889-01 7 71130514 71130514 G A WBSCR17 Missense_Mutation p.R400H 0.33 deleterious(0.01) probably_damaging(0.98) TCGA-AD-6889-01 7 71135080 71135080 G A WBSCR17 Missense_Mutation p.V464I 0.34 tolerated(0.41) benign(0) TCGA-AD-6889-01 7 72436421 72436421 C T TRIM74 Missense_Mutation p.V90M 0.18 tolerated(0.08) benign(0.028) TCGA-AD-6889-01 7 73101048 73101048 C A WBSCR22 Missense_Mutation p.L57M 0.08 deleterious(0) possibly_damaging(0.839) TCGA-AD-6889-01 7 73101224 73101224 A G WBSCR22 Missense_Mutation p.M87V 0.43 deleterious(0) benign(0.345) TCGA-AD-6889-01 7 73151393 73151393 G A ABHD11 Silent p.D227D 0.50 TCGA-AD-6889-01 7 75051006 75051006 G A POM121C Silent p.P843P 0.29 TCGA-AD-6889-01 7 75517427 75517427 C A RHBDD2 Silent p.S285S 0.24 TCGA-AD-6889-01 7 75915184 75915184 C - SRRM3 3'UTR 0.38 TCGA-AD-6889-01 7 76903908 76903908 G A CCDC146 Missense_Mutation p.R460H 0.39 tolerated(0.45) benign(0.043) TCGA-AD-6889-01 7 82435121 82435121 G A PCLO Missense_Mutation p.A4939V 0.41 unknown(0) TCGA-AD-6889-01 7 82544761 82544761 C A PCLO Missense_Mutation p.A4181S 0.38 unknown(0) TCGA-AD-6889-01 7 83021978 83021978 G A SEMA3E Silent p.D520D 0.47 TCGA-AD-6889-01 7 86493698 86493698 T - GRM3 3'UTR 0.27 TCGA-AD-6889-01 7 87069144 87069144 T C ABCB4 Missense_Mutation p.T524A 0.37 deleterious(0) probably_damaging(0.984) TCGA-AD-6889-01 7 87476265 87476265 T C SLC25A40 Silent p.S210S 0.14 TCGA-AD-6889-01 7 87912029 87912029 T C STEAP4 Missense_Mutation p.H304R 0.50 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 7 91570283 91570283 G A AKAP9 5'UTR 0.31 TCGA-AD-6889-01 7 91936914 91936914 A - ANKIB1 Frame_Shift_Del p.N146Tfs*12 0.47 TCGA-AD-6889-01 7 91948737 91948737 G T ANKIB1 Missense_Mutation p.A194S 0.34 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 7 91948770 91948770 C T ANKIB1 Missense_Mutation p.R205W 0.54 deleterious(0.02) possibly_damaging(0.892) TCGA-AD-6889-01 7 92123613 92123615 AGG - PEX1 In_Frame_Del p.P1008del 0.35 TCGA-AD-6889-01 7 92733672 92733672 G A SAMD9 Missense_Mutation p.P580L 0.39 tolerated(0.15) benign(0.003) TCGA-AD-6889-01 7 94295995 94295995 T C PEG10 3'UTR 0.44 TCGA-AD-6889-01 7 99017680 99017680 C T ATP5J2-PTCD1 Silent p.P720P 0.45 TCGA-AD-6889-01 7 99128951 99128951 T C ZKSCAN5 Silent p.S533S 0.38 TCGA-AD-6889-01 7 99159591 99159591 T C ZNF655 Intron 0.46 TCGA-AD-6889-01 7 99654965 99654965 C T ZSCAN21 Silent p.S112S 0.52 TCGA-AD-6889-01 7 99696936 99696936 G - MCM7 Frame_Shift_Del p.Q123Rfs*26 0.35 TCGA-AD-6889-01 8 101146524 101146524 A G FBXO43 Silent p.S581S 0.43 TCGA-AD-6889-01 8 101153816 101153816 T - FBXO43 Frame_Shift_Del p.K222Nfs*2 0.37 TCGA-AD-6889-01 8 104513213 104513213 G A RIMS2 Silent p.T33T 0.42 TCGA-AD-6889-01 8 10470310 10470310 C T RP1L1 Missense_Mutation p.R433H 0.55 benign(0.021) TCGA-AD-6889-01 8 105264056 105264056 A - RIMS2 3'Flank 0.29 TCGA-AD-6889-01 8 113304832 113304832 G A CSMD3 Nonsense_Mutation p.Q2908* 0.34 TCGA-AD-6889-01 8 113314043 113314043 C T CSMD3 Missense_Mutation p.E2807K 0.37 deleterious(0.01) benign(0.007) TCGA-AD-6889-01 8 11607630 11607630 G A GATA4 Missense_Mutation p.R265H 0.30 deleterious(0) probably_damaging(0.991) TCGA-AD-6889-01 8 116616340 116616340 G A TRPS1 Missense_Mutation p.A619V 0.10 tolerated_low_confidence(0.37) benign(0.002) TCGA-AD-6889-01 8 124817528 124817528 G T FAM91A1 Nonsense_Mutation p.G611* 0.47 TCGA-AD-6889-01 8 125464133 125464133 G A TRMT12 Missense_Mutation p.C322Y 0.45 deleterious(0) probably_damaging(0.994) TCGA-AD-6889-01 8 12886546 12886547 - AT KIAA1456 3'UTR 0.29 TCGA-AD-6889-01 8 130760687 130760687 C A GSDMC 3'UTR 0.48 TCGA-AD-6889-01 8 139164158 139164158 G C FAM135B Missense_Mutation p.Q854E 0.37 tolerated(0.39) benign(0.035) TCGA-AD-6889-01 8 139603697 139603697 G A COL22A1 Nonsense_Mutation p.R1555* 0.50 TCGA-AD-6889-01 8 139705907 139705907 A G COL22A1 Silent p.P912P 0.65 TCGA-AD-6889-01 8 140922470 140922470 T C TRAPPC9 Missense_Mutation p.N1060S 0.37 tolerated(0.76) benign(0.01) TCGA-AD-6889-01 8 141381183 141381183 C T TRAPPC9 Missense_Mutation p.A509T 0.41 deleterious(0) possibly_damaging(0.836) TCGA-AD-6889-01 8 142481202 142481202 G A MROH5 3'UTR 0.43 TCGA-AD-6889-01 8 144886073 144886073 C T SCRIB Missense_Mutation p.R1053Q 0.29 probably_damaging(0.976) TCGA-AD-6889-01 8 144886852 144886852 G - SCRIB Frame_Shift_Del p.T966Pfs*9 0.38 TCGA-AD-6889-01 8 144891742 144891742 G A SCRIB Silent p.D559D 0.48 TCGA-AD-6889-01 8 145107467 145107467 C T OPLAH Missense_Mutation p.R1063Q 0.56 tolerated(0.21) benign(0.001) TCGA-AD-6889-01 8 145108219 145108219 C A OPLAH Missense_Mutation p.D922Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 8 145150876 145150876 C - CYC1 Frame_Shift_Del p.S93Afs*161 0.35 TCGA-AD-6889-01 8 15095138 15095138 G A SGCZ 5'UTR 0.46 TCGA-AD-6889-01 8 17055141 17055141 C T ZDHHC2 Missense_Mutation p.H142Y 0.14 deleterious(0.03) benign(0.081) TCGA-AD-6889-01 8 18257673 18257673 G A NAT2 Missense_Mutation p.A54T 0.18 tolerated(0.46) benign(0.005) TCGA-AD-6889-01 8 21853031 21853031 C T XPO7 Missense_Mutation p.R756W 0.46 deleterious(0) possibly_damaging(0.556) TCGA-AD-6889-01 8 23290534 23290534 G A ENTPD4 Missense_Mutation p.R586W 0.64 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 8 24814058 24814058 G A CTD-2168K21.2 5'Flank 0.35 TCGA-AD-6889-01 8 2795926 2795926 A T CSMD1 3'Flank 0.50 TCGA-AD-6889-01 8 28206201 28206201 C T ZNF395 3'UTR 0.48 TCGA-AD-6889-01 8 28218518 28218518 C T ZNF395 Missense_Mutation p.A42T 0.52 tolerated(0.33) benign(0.014) TCGA-AD-6889-01 8 28638469 28638469 C T INTS9 Missense_Mutation p.G381R 0.30 tolerated(0.05) probably_damaging(0.991) TCGA-AD-6889-01 8 28651404 28651404 G A INTS9 Silent p.A319A 0.25 TCGA-AD-6889-01 8 29196013 29196014 - C DUSP4 Frame_Shift_Ins p.P196Sfs*42 0.36 TCGA-AD-6889-01 8 30404966 30404967 - A RBPMS 3'UTR 0.25 TCGA-AD-6889-01 8 30890090 30890090 T - PURG Frame_Shift_Del p.K70Rfs*5 0.39 TCGA-AD-6889-01 8 36642085 36642085 A - KCNU1 Frame_Shift_Del p.K54Nfs*25 0.30 TCGA-AD-6889-01 8 37823272 37823272 C T ADRB3 Missense_Mutation p.R239H 0.48 deleterious(0.05) probably_damaging(0.988) TCGA-AD-6889-01 8 38645002 38645002 G A TACC1 5'UTR 0.48 TCGA-AD-6889-01 8 39785599 39785599 A C IDO1 Missense_Mutation p.E369D 0.41 tolerated(0.36) possibly_damaging(0.805) TCGA-AD-6889-01 8 41790054 41790054 C T KAT6A Missense_Mutation p.R1895H 0.46 unknown(0) TCGA-AD-6889-01 8 42587571 42587571 A - CHRNB3 Frame_Shift_Del p.K376Rfs*13 0.32 TCGA-AD-6889-01 8 42812242 42812242 G A HOOK3 Missense_Mutation p.M158I 0.52 tolerated(0.08) benign(0.15) TCGA-AD-6889-01 8 48697773 48697773 T - PRKDC Frame_Shift_Del p.M3669* 0.36 TCGA-AD-6889-01 8 51503442 51503442 A - SNTG1 Frame_Shift_Del p.I274Sfs*7 0.29 TCGA-AD-6889-01 8 52567250 52567250 G C PXDNL Missense_Mutation p.L79V 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-AD-6889-01 8 52773693 52773693 C T PCMTD1 Missense_Mutation p.A7T 0.35 tolerated(0.18) benign(0.17) TCGA-AD-6889-01 8 55538813 55538813 A - RP1 Frame_Shift_Del p.R793Efs*55 0.29 TCGA-AD-6889-01 8 56436528 56436528 G A XKR4 Silent p.E565E 0.38 TCGA-AD-6889-01 8 61654304 61654304 T C CHD7 Missense_Mutation p.Y105H 0.42 benign(0.403) TCGA-AD-6889-01 8 63973890 63973890 T A TTPA Missense_Mutation p.E253V 0.39 deleterious(0) benign(0.042) TCGA-AD-6889-01 8 68334614 68334615 - T CPA6 3'UTR 0.31 TCGA-AD-6889-01 8 70498635 70498635 C - SULF1 Frame_Shift_Del p.P154Lfs*9 0.46 TCGA-AD-6889-01 8 70964301 70964301 G A PRDM14 3'UTR 0.33 TCGA-AD-6889-01 8 72936129 72936130 - A TRPA1 Frame_Shift_Ins p.L1023Ffs*15 0.28 TCGA-AD-6889-01 8 73849337 73849337 C T KCNB2 Nonsense_Mutation p.Q583* 0.53 TCGA-AD-6889-01 8 77617547 77617547 G - ZFHX4 Frame_Shift_Del p.L411Cfs*4 0.34 TCGA-AD-6889-01 8 85762216 85762216 G A RALYL Missense_Mutation p.G136S 0.39 tolerated(0.32) benign(0.026) TCGA-AD-6889-01 8 86021960 86021960 A G LRRCC1 Missense_Mutation p.R79G 0.45 deleterious(0.04) benign(0.039) TCGA-AD-6889-01 8 87126033 87126033 A - ATP6V0D2 Frame_Shift_Del p.R77Dfs*24 0.27 TCGA-AD-6889-01 8 87486583 87486583 T C RMDN1 Missense_Mutation p.Q300R 0.44 tolerated(0.15) benign(0.037) TCGA-AD-6889-01 8 87563435 87563435 T G CPNE3 Missense_Mutation p.F365V 0.47 deleterious(0) possibly_damaging(0.895) TCGA-AD-6889-01 8 88886262 88886262 C T DCAF4L2 5'UTR 0.50 TCGA-AD-6889-01 8 92972446 92972446 C A RUNX1T1 3'UTR 0.39 TCGA-AD-6889-01 8 94712874 94712874 G A FAM92A1 5'UTR 0.51 TCGA-AD-6889-01 8 94746983 94746983 C T RBM12B Silent p.R552R 0.62 TCGA-AD-6889-01 8 95869074 95869074 C T INTS8 Missense_Mutation p.R608C 0.47 tolerated(0.12) probably_damaging(0.999) TCGA-AD-6889-01 8 96047735 96047736 - A NDUFAF6 Frame_Shift_Ins p.T120Nfs*8 0.44 TCGA-AD-6889-01 8 98289662 98289662 G A TSPYL5 Silent p.R137R 0.47 TCGA-AD-6889-01 8 98731406 98731406 A - MTDH Frame_Shift_Del p.N505Ifs*18 0.28 TCGA-AD-6889-01 9 100353622 100353622 A - TMOD1 Frame_Shift_Del p.N309Tfs*24 0.27 TCGA-AD-6889-01 9 100437844 100437844 G A XPA Silent p.S233S 0.43 TCGA-AD-6889-01 9 100692595 100692595 G T HEMGN Missense_Mutation p.P361H 0.44 tolerated(0.06) probably_damaging(0.979) TCGA-AD-6889-01 9 101216493 101216493 G A GABBR2 Nonsense_Mutation p.Q336* 0.35 TCGA-AD-6889-01 9 104184121 104184121 C T ALDOB Silent p.Q355Q 0.43 TCGA-AD-6889-01 9 104499574 104499574 G A GRIN3A Missense_Mutation p.R230W 0.49 tolerated(0.19) probably_damaging(0.947) TCGA-AD-6889-01 9 1056342 1056342 G T DMRT2 Missense_Mutation p.R252I 0.38 deleterious(0) probably_damaging(0.99) TCGA-AD-6889-01 9 111617043 111617043 G T ACTL7B Missense_Mutation p.L390M 0.47 deleterious(0) probably_damaging(0.999) TCGA-AD-6889-01 9 111618016 111618016 G A ACTL7B Silent p.Y65Y 0.76 TCGA-AD-6889-01 9 111618213 111618214 - CCTC ACTL7B 5'UTR 0.33 TCGA-AD-6889-01 9 113173370 113173370 T C SVEP1 Silent p.P2207P 0.48 TCGA-AD-6889-01 9 113431160 113431160 C T MUSK 5'UTR 0.44 TCGA-AD-6889-01 9 113637633 113637633 C T LPAR1 3'UTR 0.32 TCGA-AD-6889-01 9 114206731 114206731 C T KIAA0368 Missense_Mutation p.R244H 0.45 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 9 114476864 114476864 A - C9orf84 Frame_Shift_Del p.L695* 0.28 TCGA-AD-6889-01 9 114693580 114693580 T C UGCG Missense_Mutation p.V256A 0.59 tolerated(0.4) possibly_damaging(0.517) TCGA-AD-6889-01 9 115948554 115948554 C T FKBP15 Silent p.P491P 0.49 TCGA-AD-6889-01 9 116018424 116018424 A - SLC31A1 5'UTR p.M1? 0.35 TCGA-AD-6889-01 9 116085176 116085176 C T WDR31 Missense_Mutation p.C162Y 0.46 deleterious(0) probably_damaging(0.991) TCGA-AD-6889-01 9 117266613 117266613 G A DFNB31 Missense_Mutation p.R157C 0.33 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 9 117808904 117808904 C T TNC Missense_Mutation p.R1637H 0.39 tolerated(0.06) benign(0.177) TCGA-AD-6889-01 9 119187835 119187835 G A ASTN2 3'UTR 0.35 TCGA-AD-6889-01 9 119460141 119460141 C T TRIM32 Silent p.G40G 0.41 TCGA-AD-6889-01 9 123169350 123169350 G A CDK5RAP2 Missense_Mutation p.L1635F 0.38 tolerated(0.1) possibly_damaging(0.86) TCGA-AD-6889-01 9 123535075 123535075 G T FBXW2 Missense_Mutation p.P288H 0.44 tolerated(0.05) benign(0.176) TCGA-AD-6889-01 9 124534938 124534938 T - DAB2IP Frame_Shift_Del p.F684Lfs*81 0.34 TCGA-AD-6889-01 9 125551916 125551916 C T OR5C1 Silent p.V235V 0.38 TCGA-AD-6889-01 9 128347857 128347857 G A MAPKAP1 Silent p.S216S 0.43 TCGA-AD-6889-01 9 129597712 129597712 T - ZBTB43 3'UTR 0.51 TCGA-AD-6889-01 9 129642244 129642244 C - ZBTB34 Frame_Shift_Del p.S187Afs*29 0.15 TCGA-AD-6889-01 9 129645670 129645670 C T ZBTB34 3'UTR 0.41 TCGA-AD-6889-01 9 129647253 129647256 TTAT - ZBTB34 3'UTR 0.38 TCGA-AD-6889-01 9 130550664 130550664 G A CDK9 Missense_Mutation p.G202R 0.24 deleterious(0) possibly_damaging(0.901) TCGA-AD-6889-01 9 130742355 130742355 A G FAM102A Missense_Mutation p.L21P 0.42 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 9 130915392 130915392 C T LCN2 Silent p.D197D 0.49 TCGA-AD-6889-01 9 130928382 130928382 A - CIZ1 3'UTR 0.21 TCGA-AD-6889-01 9 130980932 130980932 G A DNM1 Missense_Mutation p.A103T 0.50 tolerated(0.18) benign(0.091) TCGA-AD-6889-01 9 131221879 131221879 T C ODF2 Silent p.S22S 0.37 TCGA-AD-6889-01 9 131247124 131247124 G A ODF2 Missense_Mutation p.E417K 0.11 deleterious(0.02) possibly_damaging(0.671) TCGA-AD-6889-01 9 131669508 131669508 C T LRRC8A Missense_Mutation p.P22L 0.42 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 9 131671479 131671479 C T LRRC8A Missense_Mutation p.T679I 0.53 tolerated(0.18) benign(0.037) TCGA-AD-6889-01 9 133294411 133294411 C T HMCN2 Missense_Mutation p.A115V 0.48 tolerated(0.78) benign(0.019) TCGA-AD-6889-01 9 133542125 133542125 C T PRDM12 Silent p.T118T 0.40 TCGA-AD-6889-01 9 133729537 133729537 G A ABL1 Missense_Mutation p.A75T 0.44 deleterious(0.03) benign(0.055) TCGA-AD-6889-01 9 134354637 134354637 A G PRRC2B Splice_Site p.X1587_splice 0.49 TCGA-AD-6889-01 9 134459978 134459978 C T RAPGEF1 Missense_Mutation p.R912Q 0.46 deleterious(0) possibly_damaging(0.848) TCGA-AD-6889-01 9 135865293 135865293 A G GFI1B Silent p.T271T 0.14 TCGA-AD-6889-01 9 136289572 136289572 C T ADAMTS13 Missense_Mutation p.R102C 0.45 deleterious(0) probably_damaging(0.997) TCGA-AD-6889-01 9 136507382 136507382 G A DBH Silent p.L180L 0.53 TCGA-AD-6889-01 9 136535857 136535857 C T SARDH Missense_Mutation p.A782T 0.39 tolerated(0.25) benign(0.178) TCGA-AD-6889-01 9 137707451 137707451 C - COL5A1 Frame_Shift_Del p.G1351Efs*137 0.30 TCGA-AD-6889-01 9 137801785 137801785 G A FCN1 Silent p.Y280Y 0.38 TCGA-AD-6889-01 9 139360539 139360539 G A SEC16A Missense_Mutation p.P1393L 0.53 deleterious(0) probably_damaging(0.942) TCGA-AD-6889-01 9 139390961 139390961 C T NOTCH1 Silent p.P2410P 0.29 TCGA-AD-6889-01 9 139395076 139395076 G A NOTCH1 Silent p.A1954A 0.37 TCGA-AD-6889-01 9 139814846 139814846 C T TRAF2 Missense_Mutation p.A280V 0.10 tolerated(0.38) benign(0.002) TCGA-AD-6889-01 9 139837052 139837052 G A FBXW5 Missense_Mutation p.R208C 0.62 tolerated(0.12) possibly_damaging(0.836) TCGA-AD-6889-01 9 139840404 139840404 G A C8G Missense_Mutation p.R100H 0.52 deleterious(0) possibly_damaging(0.842) TCGA-AD-6889-01 9 139926144 139926144 C A FUT7 Missense_Mutation p.G16V 0.46 tolerated(0.18) benign(0.001) TCGA-AD-6889-01 9 139959097 139959097 G A SAPCD2 3'UTR 0.51 TCGA-AD-6889-01 9 140107031 140107031 C T NDOR1 Silent p.L97L 0.44 TCGA-AD-6889-01 9 140438251 140438251 T C PNPLA7 Missense_Mutation p.N97S 0.43 tolerated(1) benign(0.037) TCGA-AD-6889-01 9 140509521 140509521 C T ARRDC1 Intron 0.44 TCGA-AD-6889-01 9 140732961 140732961 C - EHMT1 3'Flank 0.44 TCGA-AD-6889-01 9 140946601 140946601 G A CACNA1B Silent p.L1256L 0.44 TCGA-AD-6889-01 9 141069869 141069869 G A TUBBP5 RNA 0.27 TCGA-AD-6889-01 9 15479657 15479657 G A PSIP1 Missense_Mutation p.A162V 0.39 tolerated(0.21) benign(0.001) TCGA-AD-6889-01 9 15506622 15506622 G T PSIP1 Missense_Mutation p.P29H 0.33 deleterious(0) probably_damaging(0.978) TCGA-AD-6889-01 9 15564028 15564028 C T CCDC171 5'UTR 0.49 TCGA-AD-6889-01 9 15657310 15657310 G A CCDC171 Intron 0.47 TCGA-AD-6889-01 9 15744289 15744290 - A CCDC171 Frame_Shift_Ins p.N692Kfs*9 0.40 TCGA-AD-6889-01 9 15745613 15745613 C T CCDC171 Silent p.D885D 0.35 TCGA-AD-6889-01 9 21207092 21207092 G A IFNA10 Missense_Mutation p.A2V 0.47 deleterious(0.01) possibly_damaging(0.562) TCGA-AD-6889-01 9 2643960 2643960 G A VLDLR Splice_Site p.X356_splice 0.45 TCGA-AD-6889-01 9 27047359 27047359 A G IFT74 Missense_Mutation p.H399R 0.39 tolerated(0.1) benign(0.005) TCGA-AD-6889-01 9 32635664 32635664 G - TAF1L 5'UTR 0.62 TCGA-AD-6889-01 9 34241252 34241252 C T UBAP1 Missense_Mutation p.R141W 0.31 tolerated(0.06) benign(0.011) TCGA-AD-6889-01 9 34512401 34512401 G T DNAI1 Missense_Mutation p.G490W 0.38 deleterious(0) probably_damaging(0.983) TCGA-AD-6889-01 9 35680802 35680802 G A CA9 Silent p.A430A 0.35 TCGA-AD-6889-01 9 35707141 35707141 G - TLN1 Frame_Shift_Del p.P1628Rfs*20 0.38 TCGA-AD-6889-01 9 37518347 37518347 G T FBXO10 Silent p.A763A 0.47 TCGA-AD-6889-01 9 37780696 37780698 AGA - EXOSC3 In_Frame_Del p.F269del 0.43 TCGA-AD-6889-01 9 4722618 4722618 G A AK3 Silent p.G53G 0.50 TCGA-AD-6889-01 9 69127024 69127024 G A PGM5P2 RNA 0.34 TCGA-AD-6889-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.07 deleterious(0.01) possibly_damaging(0.573) TCGA-AD-6889-01 9 75524539 75524539 G T ALDH1A1 Missense_Mutation p.A446D 0.43 deleterious(0.01) possibly_damaging(0.873) TCGA-AD-6889-01 9 77755747 77755747 A G OSTF1 Intron 0.31 TCGA-AD-6889-01 9 79634682 79634682 G A FOXB2 Missense_Mutation p.D38N 0.44 deleterious(0) unknown(0) TCGA-AD-6889-01 9 84531279 84531279 A - SPATA31D5P RNA 0.36 TCGA-AD-6889-01 9 86585198 86585198 G A HNRNPK Missense_Mutation p.R414C 0.52 deleterious(0.03) benign(0.01) TCGA-AD-6889-01 9 91609148 91609148 C - C9orf47 3'UTR 0.48 TCGA-AD-6889-01 9 94171688 94171688 C A NFIL3 Missense_Mutation p.E443D 0.50 tolerated(0.05) benign(0.058) TCGA-AD-6889-01 9 96080206 96080207 - C WNK2 Frame_Shift_Ins p.T2267Hfs*48 0.36 TCGA-AD-6889-01 9 96438893 96438894 - AA PHF2 Frame_Shift_Ins p.S954Rfs*7 0.37 TCGA-AD-6889-01 9 99404060 99404060 G T AAED1 Missense_Mutation p.P221H 0.42 deleterious(0.04) benign(0.062) TCGA-AD-6889-01 X 100658929 100658929 C A GLA Missense_Mutation p.G80V 0.88 deleterious(0) probably_damaging(1) TCGA-AD-6889-01 X 101093359 101093359 T C NXF5 Silent p.P253P 0.70 TCGA-AD-6889-01 X 102471808 102471808 A - BEX4 3'UTR 0.48 TCGA-AD-6889-01 X 102528984 102528984 A G TCEAL5 Missense_Mutation p.W170R 0.79 deleterious(0.02) probably_damaging(1) TCGA-AD-6889-01 X 105855262 105855262 C T CXorf57 5'UTR 0.94 TCGA-AD-6889-01 X 106846480 106846480 G A FRMPD3 Silent p.Q1770Q 0.89 TCGA-AD-6889-01 X 107920863 107920863 G T COL4A5 Missense_Mutation p.Q1314H 0.92 unknown(0) TCGA-AD-6889-01 X 109694612 109694612 C A RGAG1 Missense_Mutation p.S256Y 0.90 deleterious(0) probably_damaging(0.996) TCGA-AD-6889-01 X 111025269 111025269 G T TRPC5 Missense_Mutation p.P665H 0.82 deleterious(0) probably_damaging(0.95) TCGA-AD-6889-01 X 11133039 11133039 A G HCCS Missense_Mutation p.E62G 0.10 deleterious(0.05) benign(0.008) TCGA-AD-6889-01 X 117960026 117960026 C T ZCCHC12 Silent p.S273S 0.19 TCGA-AD-6889-01 X 118605036 118605036 T - SLC25A5 3'UTR 0.50 TCGA-AD-6889-01 X 118678410 118678410 G A CXorf56 Missense_Mutation p.P110L 0.92 tolerated(0.12) benign(0.068) TCGA-AD-6889-01 X 119389225 119389225 T A ZBTB33 Missense_Mutation p.I652N 0.10 tolerated(0.5) benign(0.326) TCGA-AD-6889-01 X 119402170 119402170 G - TMEM255A Frame_Shift_Del p.Q274Kfs*104 0.48 TCGA-AD-6889-01 X 124097460 124097460 T C TENM1 Missense_Mutation p.E48G 0.91 deleterious_low_confidence(0.03) benign(0.314) TCGA-AD-6889-01 X 129149901 129149901 G T BCORL1 Missense_Mutation p.M1051I 0.84 benign(0.07) TCGA-AD-6889-01 X 131540364 131540364 C T MBNL3 Silent p.T78T 0.86 TCGA-AD-6889-01 X 13338371 13338371 A - ATXN3L 5'UTR 0.47 TCGA-AD-6889-01 X 134993403 134993403 G A SAGE1 Silent p.Q686Q 0.93 TCGA-AD-6889-01 X 135278979 135278979 C A FHL1 Intron 0.79 TCGA-AD-6889-01 X 135443684 135443684 C - GPR112 Frame_Shift_Del p.P2406Lfs*10 0.47 TCGA-AD-6889-01 X 13681975 13681975 T G TCEANC 3'UTR 0.85 TCGA-AD-6889-01 X 13754594 13754594 T C OFD1 Intron 0.90 TCGA-AD-6889-01 X 13786313 13786313 G A OFD1 Silent p.Q966Q 0.22 TCGA-AD-6889-01 X 140993556 140993556 G T MAGEC1 Missense_Mutation p.E122D 0.88 deleterious_low_confidence(0.01) benign(0.005) TCGA-AD-6889-01 X 142968073 142968073 T - UBE2NL 3'UTR 0.46 TCGA-AD-6889-01 X 144909832 144909833 - A TMEM257 3'UTR 0.43 TCGA-AD-6889-01 X 148693008 148693008 T C TMEM185A Silent p.S59S 0.82 TCGA-AD-6889-01 X 150840069 150840069 G A PASD1 Missense_Mutation p.V419I 0.92 tolerated(1) benign(0.002) TCGA-AD-6889-01 X 152915736 152915736 C T DUSP9 Silent p.G377G 0.89 TCGA-AD-6889-01 X 153036088 153036088 C T PLXNB3 Silent p.S690S 0.91 TCGA-AD-6889-01 X 153209596 153209596 G A RENBP Missense_Mutation p.T50M 0.96 deleterious(0) probably_damaging(0.983) TCGA-AD-6889-01 X 153585844 153585844 G A FLNA Missense_Mutation p.R1635C 0.91 deleterious(0) possibly_damaging(0.529) TCGA-AD-6889-01 X 153609453 153609453 C T EMD Missense_Mutation p.R221C 0.88 deleterious(0) possibly_damaging(0.667) TCGA-AD-6889-01 X 153706295 153706295 G - LAGE3 Frame_Shift_Del p.V141Ffs*20 0.54 TCGA-AD-6889-01 X 155004852 155004852 G A SPRY3 3'UTR 0.42 TCGA-AD-6889-01 X 18768006 18768006 G A PPEF1 Missense_Mutation p.R111Q 0.89 deleterious(0.04) probably_damaging(1) TCGA-AD-6889-01 X 18919691 18919691 G T PHKA2 Missense_Mutation p.P980H 0.85 deleterious(0.02) probably_damaging(0.971) TCGA-AD-6889-01 X 19560215 19560215 G - SH3KBP1 Frame_Shift_Del p.L574Cfs*39 0.52 TCGA-AD-6889-01 X 205449 205449 G A PLCXD1 Silent p.S59S 0.07 TCGA-AD-6889-01 X 221718 221718 C T GTPBP6 3'UTR 0.50 TCGA-AD-6889-01 X 22291938 22291938 C T ZNF645 Missense_Mutation p.P277L 0.92 tolerated(0.06) benign(0.022) TCGA-AD-6889-01 X 24228885 24228885 C T ZFX Missense_Mutation p.P604S 0.32 deleterious(0.05) benign(0.19) TCGA-AD-6889-01 X 2670114 2670115 - T XG 5'UTR 0.28 TCGA-AD-6889-01 X 27998150 27998150 G A DCAF8L1 Silent p.H434H 0.16 TCGA-AD-6889-01 X 30327206 30327206 G A NR0B1 Missense_Mutation p.A92V 0.92 tolerated_low_confidence(0.17) benign(0.033) TCGA-AD-6889-01 X 31676262 31676262 C A DMD Splice_Site p.X2625_splice 0.87 TCGA-AD-6889-01 X 46539128 46539128 T C SLC9A7 Silent p.G196G 0.88 TCGA-AD-6889-01 X 47086411 47086411 C T CDK16 Missense_Mutation p.T459M 0.87 deleterious(0.01) probably_damaging(0.962) TCGA-AD-6889-01 X 47434551 47434551 G A SYN1 Silent p.S427S 0.08 TCGA-AD-6889-01 X 47517024 47517024 C A UXT Silent p.S77S 0.88 TCGA-AD-6889-01 X 48378760 48378760 C T PORCN Intron 0.86 TCGA-AD-6889-01 X 48460282 48460282 C A WDR13 Silent p.A314A 0.84 TCGA-AD-6889-01 X 48460474 48460474 G A WDR13 Missense_Mutation p.R345H 0.88 deleterious(0) probably_damaging(0.957) TCGA-AD-6889-01 X 48463285 48463285 G A WDR13 Silent p.A441A 0.79 TCGA-AD-6889-01 X 48895848 48895848 T C TFE3 Silent p.P218P 0.96 TCGA-AD-6889-01 X 48896732 48896732 G T TFE3 Missense_Mutation p.P145H 0.44 tolerated(0.09) unknown(0) TCGA-AD-6889-01 X 49075803 49075803 G A CACNA1F Nonsense_Mutation p.R895* 0.96 TCGA-AD-6889-01 X 49645808 49645808 A G USP27X Missense_Mutation p.N300D 0.79 tolerated(0.06) benign(0.004) TCGA-AD-6889-01 X 49646963 49646963 A G USP27X 3'UTR 0.63 TCGA-AD-6889-01 X 50377271 50377271 G A SHROOM4 Missense_Mutation p.A601V 0.77 deleterious(0) probably_damaging(0.998) TCGA-AD-6889-01 X 51238948 51238948 G A NUDT11 Nonsense_Mutation p.R117* 0.25 TCGA-AD-6889-01 X 54497148 54497148 G - FGD1 Frame_Shift_Del p.P176Hfs*39 0.82 TCGA-AD-6889-01 X 57621319 57621319 T A ZXDB 3'UTR 0.83 TCGA-AD-6889-01 X 57934823 57934824 - A ZXDA Frame_Shift_Ins p.G678Wfs*16 0.17 TCGA-AD-6889-01 X 5821798 5821798 G A NLGN4X Silent p.N307N 0.94 TCGA-AD-6889-01 X 68748881 68748881 C A FAM155B Missense_Mutation p.Q303K 0.91 deleterious(0.04) possibly_damaging(0.879) TCGA-AD-6889-01 X 70348499 70348499 A G MED12 Missense_Mutation p.I1136V 0.86 benign(0.034) TCGA-AD-6889-01 X 70360635 70360635 G A MED12 Silent p.Q2065Q 0.86 TCGA-AD-6889-01 X 70514290 70514290 T C NONO Missense_Mutation p.S188P 0.89 deleterious(0) possibly_damaging(0.857) TCGA-AD-6889-01 X 73524629 73524629 C - ZCCHC13 3'UTR 0.55 TCGA-AD-6889-01 X 75649329 75649329 G A MAGEE1 Missense_Mutation p.A336T 0.31 tolerated_low_confidence(0.19) benign(0.005) TCGA-AD-6889-01 X 75650125 75650125 C T MAGEE1 Missense_Mutation p.A601V 0.89 deleterious(0.02) possibly_damaging(0.544) TCGA-AD-6889-01 X 78011099 78011099 A - LPAR4 Frame_Shift_Del p.V247Yfs*2 0.49 TCGA-AD-6889-01 X 83128901 83128901 C A CYLC1 Missense_Mutation p.D395E 0.76 deleterious(0.03) unknown(0) TCGA-AD-6889-01 X 83411162 83411162 T C RPS6KA6 Missense_Mutation p.H60R 0.90 tolerated(0.37) benign(0.194) TCGA-AD-6889-01 X 83723955 83723955 T - HDX Frame_Shift_Del p.N259Tfs*58 0.51 TCGA-AD-6889-01 X 8764410 8764410 C A FAM9A Missense_Mutation p.K129N 0.88 tolerated_low_confidence(0.37) benign(0.096) TCGA-AD-6889-01 X 91134309 91134309 T - PCDH11X Intron 0.31 TCGA-AD-6889-01 Y 2655461 2655461 G A SRY Nonsense_Mutation p.R62* 0.94 TCGA-AD-6890-01 10 112343967 112343967 C T SMC3 Missense_Mutation p.T373M 0.19 deleterious(0.01) possibly_damaging(0.532) TCGA-AD-6890-01 10 124336021 124336021 C T DMBT1 Silent p.S130S 0.13 TCGA-AD-6890-01 10 135027569 135027569 C T KNDC1 Silent p.N1540N 0.51 TCGA-AD-6890-01 10 17949640 17949640 T A MRC1L1 Nonsense_Mutation p.L1335* 0.20 TCGA-AD-6890-01 10 23622006 23622006 C T C10orf67 Silent p.T105T 0.15 TCGA-AD-6890-01 10 76910741 76910741 C T SAMD8 Missense_Mutation p.T152I 0.33 tolerated(0.08) possibly_damaging(0.885) TCGA-AD-6890-01 10 8056667 8056669 AAG - TAF3 In_Frame_Del p.K917del 0.23 TCGA-AD-6890-01 11 118772414 118772414 G A BCL9L Missense_Mutation p.R680W 0.09 probably_damaging(0.991) TCGA-AD-6890-01 11 119044232 119044232 C T NLRX1 Missense_Mutation p.R92W 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6890-01 11 120008480 120008480 T G TRIM29 Missense_Mutation p.D87A 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AD-6890-01 11 121367678 121367678 C T SORL1 Missense_Mutation p.R287W 0.08 deleterious(0.03) benign(0) TCGA-AD-6890-01 11 133402185 133402185 G T OPCML Missense_Mutation p.A12E 0.31 tolerated(0.46) benign(0.106) TCGA-AD-6890-01 11 57382081 57382081 C T SERPING1 3'UTR 0.17 TCGA-AD-6890-01 11 65715006 65715006 G A TSGA10IP RNA 0.20 TCGA-AD-6890-01 11 66328763 66328763 C T CTSF 3'Flank 0.38 TCGA-AD-6890-01 11 70130130 70130130 A G PPFIA1 Intron 0.16 TCGA-AD-6890-01 11 7334753 7334753 G T SYT9 Missense_Mutation p.D209Y 0.45 deleterious(0) possibly_damaging(0.907) TCGA-AD-6890-01 11 94732501 94732501 G A KDM4D 3'UTR 0.41 TCGA-AD-6890-01 12 108097519 108097519 G A PWP1 Missense_Mutation p.D321N 0.41 deleterious(0) probably_damaging(0.996) TCGA-AD-6890-01 12 18234307 18234307 G A RERGL Nonsense_Mutation p.R146* 0.45 TCGA-AD-6890-01 12 2659200 2659200 G A CACNA1C Splice_Site p.X494_splice 0.34 TCGA-AD-6890-01 12 50471785 50471785 G A ASIC1 Missense_Mutation p.E238K 0.53 deleterious(0) possibly_damaging(0.796) TCGA-AD-6890-01 12 5153902 5153902 G A KCNA5 Missense_Mutation p.A197T 0.24 tolerated(0.41) benign(0.006) TCGA-AD-6890-01 12 53009976 53009976 G A KRT73 Silent p.R212R 0.21 TCGA-AD-6890-01 12 72372861 72372861 C T TPH2 Missense_Mutation p.P312L 0.24 deleterious(0) probably_damaging(1) TCGA-AD-6890-01 12 7966886 7966886 G A SLC2A14 3'UTR 0.78 TCGA-AD-6890-01 13 84455772 84455772 G - SLITRK1 5'UTR 0.22 TCGA-AD-6890-01 13 96547508 96547508 C A UGGT2 Missense_Mutation p.L895F 0.32 deleterious(0) possibly_damaging(0.907) TCGA-AD-6890-01 14 105407001 105407001 C A AHNAK2 Missense_Mutation p.L4929F 0.15 possibly_damaging(0.769) TCGA-AD-6890-01 14 24901626 24901626 G A KHNYN Missense_Mutation p.D387N 0.25 deleterious(0.04) benign(0.402) TCGA-AD-6890-01 14 60976476 60976476 G A SIX6 Silent p.P120P 0.24 TCGA-AD-6890-01 15 101169889 101169889 G A ASB7 Silent p.P153P 0.53 TCGA-AD-6890-01 15 23889459 23889459 C T MAGEL2 Missense_Mutation p.R541Q 0.25 tolerated(0.61) benign(0.027) TCGA-AD-6890-01 15 25963540 25963540 C T ATP10A Missense_Mutation p.R457H 0.24 deleterious(0) probably_damaging(0.998) TCGA-AD-6890-01 15 41192380 41192380 A G VPS18 Missense_Mutation p.E455G 0.12 deleterious(0) probably_damaging(0.954) TCGA-AD-6890-01 15 49254749 49254749 G T SHC4 Missense_Mutation p.A155E 0.41 tolerated(0.36) benign(0.01) TCGA-AD-6890-01 15 86807634 86807634 T C AGBL1 Missense_Mutation p.V365A 0.29 tolerated(0.2) benign(0.008) TCGA-AD-6890-01 16 29998322 29998322 C T TAOK2 Missense_Mutation p.P910L 0.13 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AD-6890-01 16 30778155 30778155 C T RNF40 Missense_Mutation p.R463C 0.21 deleterious(0) probably_damaging(0.991) TCGA-AD-6890-01 16 69333636 69333636 C T SNTB2 Nonsense_Mutation p.R497* 0.28 TCGA-AD-6890-01 16 88505414 88505414 C A ZNF469 Silent p.R3818R 0.21 TCGA-AD-6890-01 17 39593770 39593770 G A KRT38 Missense_Mutation p.T422M 0.13 deleterious(0.03) benign(0.146) TCGA-AD-6890-01 17 65988114 65988114 A G C17orf58 Missense_Mutation p.L70P 0.07 deleterious(0) possibly_damaging(0.867) TCGA-AD-6890-01 17 70118881 70118883 GCG - SOX9 In_Frame_Del p.R152del 0.36 TCGA-AD-6890-01 17 70119762 70119763 - GGGGC SOX9 Frame_Shift_Ins p.P258Gfs*23 0.62 TCGA-AD-6890-01 17 73282773 73282774 AC - SLC25A19 Frame_Shift_Del p.S25Wfs*23 0.46 TCGA-AD-6890-01 17 75483634 75483634 G A SEPT9 Missense_Mutation p.D348N 0.19 deleterious(0.03) benign(0.41) TCGA-AD-6890-01 17 78220343 78220343 T C SLC26A11 Missense_Mutation p.S397P 0.09 tolerated(1) benign(0.002) TCGA-AD-6890-01 18 44065086 44065086 G A LOXHD1 Silent p.N915N 0.39 TCGA-AD-6890-01 18 8798236 8798236 G A SOGA2 Missense_Mutation p.G795R 0.33 tolerated(0.07) possibly_damaging(0.568) TCGA-AD-6890-01 19 11510878 11510878 G A RGL3 Missense_Mutation p.A527V 0.24 tolerated(0.19) probably_damaging(0.961) TCGA-AD-6890-01 19 1912940 1912940 C T ADAT3 Silent p.Y298Y 0.57 TCGA-AD-6890-01 19 4362729 4362729 G A SH3GL1 Missense_Mutation p.R245W 0.22 deleterious(0.01) benign(0.236) TCGA-AD-6890-01 19 47712633 47712633 T G SAE1 3'UTR 0.58 TCGA-AD-6890-01 19 56419175 56419175 G T NLRP13 Nonsense_Mutation p.C810* 0.33 TCGA-AD-6890-01 19 57286436 57286436 G A ZIM2 Missense_Mutation p.R402C 0.21 deleterious(0.01) benign(0.015) TCGA-AD-6890-01 19 58438841 58438841 C T ZNF418 Silent p.G236G 0.18 TCGA-AD-6890-01 19 59061351 59061351 C T TRIM28 Silent p.H714H 0.27 TCGA-AD-6890-01 19 7975916 7975916 G A MAP2K7 Missense_Mutation p.D243N 0.36 deleterious(0) probably_damaging(1) TCGA-AD-6890-01 19 8660759 8660759 G A ADAMTS10 Missense_Mutation p.R456W 0.31 deleterious(0.01) possibly_damaging(0.873) TCGA-AD-6890-01 19 8962380 8962380 C A MUC16 Missense_Mutation p.R14440I 0.39 possibly_damaging(0.858) TCGA-AD-6890-01 1 100684201 100684201 C T DBT Missense_Mutation p.R179H 0.17 deleterious(0.02) possibly_damaging(0.479) TCGA-AD-6890-01 1 101006490 101006490 T C GPR88 3'UTR 0.23 TCGA-AD-6890-01 1 101006492 101006492 T A GPR88 3'UTR 0.26 TCGA-AD-6890-01 1 109607062 109607062 G A TAF13 3'UTR 0.29 TCGA-AD-6890-01 1 11839137 11839137 G A C1orf167 Missense_Mutation p.R908H 0.70 deleterious(0) possibly_damaging(0.715) TCGA-AD-6890-01 1 154296167 154296167 A G AQP10 Missense_Mutation p.I198V 0.39 tolerated(0.99) benign(0.005) TCGA-AD-6890-01 1 156046950 156046950 G A MEX3A Silent p.P326P 0.44 TCGA-AD-6890-01 1 172102116 172102116 G T DNM3 Intron 0.58 TCGA-AD-6890-01 1 173493219 173493219 T - SLC9C2 Frame_Shift_Del p.K843Nfs*2 0.36 TCGA-AD-6890-01 1 190234142 190234142 G T BRINP3 Missense_Mutation p.S157R 0.29 deleterious(0.01) benign(0.17) TCGA-AD-6890-01 1 196197446 196197446 G T KCNT2 Missense_Mutation p.P1106T 0.22 deleterious(0) benign(0.288) TCGA-AD-6890-01 1 220157568 220157568 G C EPRS Missense_Mutation p.L1024V 0.61 deleterious(0.02) possibly_damaging(0.814) TCGA-AD-6890-01 1 234367389 234367389 G A SLC35F3 Silent p.T170T 0.15 TCGA-AD-6890-01 1 34046389 34046389 C T CSMD2 Missense_Mutation p.A2453T 0.34 tolerated(0.12) benign(0.376) TCGA-AD-6890-01 1 38227576 38227576 G A EPHA10 Silent p.G117G 0.12 TCGA-AD-6890-01 1 95330392 95330392 A C SLC44A3 Missense_Mutation p.L444F 0.25 tolerated(0.06) benign(0.35) TCGA-AD-6890-01 20 23345742 23345742 C T GZF1 Missense_Mutation p.T241M 0.47 deleterious(0.02) probably_damaging(0.991) TCGA-AD-6890-01 20 31828048 31828048 C T BPIFA1 Silent p.V146V 0.33 TCGA-AD-6890-01 20 33703611 33703611 G A EDEM2 Silent p.F454F 0.37 TCGA-AD-6890-01 20 7875846 7875846 T C HAO1 Silent p.K249K 0.19 TCGA-AD-6890-01 22 21329042 21329042 C T AIFM3 Silent p.S219S 0.23 TCGA-AD-6890-01 22 26706742 26706742 C T SEZ6L Missense_Mutation p.R541C 0.35 tolerated(0.17) benign(0.262) TCGA-AD-6890-01 22 26706756 26706756 G A SEZ6L Silent p.T545T 0.58 TCGA-AD-6890-01 22 51183295 51183295 C T ACR Missense_Mutation p.P309L 0.16 tolerated(0.14) benign(0.002) TCGA-AD-6890-01 2 109276122 109276122 G A LIMS1 Missense_Mutation p.A82T 0.25 tolerated(0.7) benign(0.028) TCGA-AD-6890-01 2 128703130 128703130 T C SAP130 Missense_Mutation p.E960G 0.11 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AD-6890-01 2 165984285 165984285 G A SCN3A Silent p.Y1083Y 0.15 TCGA-AD-6890-01 2 179611382 179611382 C A TTN Intron 0.21 TCGA-AD-6890-01 2 179669350 179669350 G A TTN Missense_Mutation p.T7M 0.24 TCGA-AD-6890-01 2 223086087 223086087 C T PAX3 Missense_Mutation p.R271H 0.54 deleterious(0) probably_damaging(0.927) TCGA-AD-6890-01 2 29415994 29415994 G A ALK 3'UTR 0.26 TCGA-AD-6890-01 2 43939486 43939486 T C PLEKHH2 Silent p.P808P 0.22 TCGA-AD-6890-01 2 48018193 48018193 C A MSH6 Missense_Mutation p.H130N 0.25 deleterious(0) probably_damaging(0.999) TCGA-AD-6890-01 2 64863477 64863477 C T SERTAD2 Missense_Mutation p.E177K 0.25 deleterious(0) probably_damaging(0.986) TCGA-AD-6890-01 3 126291398 126291398 T G TXNRD3NB 5'UTR 0.41 TCGA-AD-6890-01 3 12858539 12858539 T C CAND2 Missense_Mutation p.V703A 0.13 deleterious(0) benign(0.338) TCGA-AD-6890-01 3 1443162 1443162 C G CNTN6 Missense_Mutation p.S917C 0.19 deleterious(0) probably_damaging(0.999) TCGA-AD-6890-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.40 deleterious(0.02) probably_damaging(0.959) TCGA-AD-6890-01 3 193372685 193372685 G T OPA1 Missense_Mutation p.V665L 0.23 tolerated(0.25) benign(0.008) TCGA-AD-6890-01 3 33038424 33038424 C T GLB1 3'UTR 0.36 TCGA-AD-6890-01 3 42794099 42794099 G A CCDC13 Silent p.L161L 0.33 TCGA-AD-6890-01 4 123175353 123175353 G A KIAA1109 Missense_Mutation p.E1976K 0.18 benign(0.243) TCGA-AD-6890-01 4 126411850 126411850 G A FAT4 Missense_Mutation p.A4625T 0.22 probably_damaging(0.993) TCGA-AD-6890-01 4 183245350 183245350 C T TENM3 Silent p.Y59Y 0.50 TCGA-AD-6890-01 4 48835420 48835420 A G OCIAD1 Missense_Mutation p.I21V 0.22 tolerated(0.46) probably_damaging(0.996) TCGA-AD-6890-01 4 56458328 56458328 C T PDCL2 5'UTR 0.26 TCGA-AD-6890-01 4 72618247 72618247 G A GC Silent p.Y480Y 0.25 TCGA-AD-6890-01 4 84368032 84368032 C A HELQ Nonsense_Mutation p.E450* 0.22 TCGA-AD-6890-01 4 88766500 88766500 G A MEPE Silent p.A160A 0.32 TCGA-AD-6890-01 5 112174096 112174096 C A APC Nonsense_Mutation p.Y935* 0.46 TCGA-AD-6890-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.26 TCGA-AD-6890-01 5 140174742 140174742 C T PCDHA2 Missense_Mutation p.R65W 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-AD-6890-01 5 140481574 140481574 C T PCDHB3 Silent p.N447N 0.56 TCGA-AD-6890-01 5 140802601 140802601 G A PCDHGA11 Missense_Mutation p.A603T 0.21 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-AD-6890-01 5 153190775 153190775 C T GRIA1 Missense_Mutation p.T914M 0.50 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-AD-6890-01 5 15937084 15937084 G A FBXL7 Missense_Mutation p.C422Y 0.27 tolerated(0.49) benign(0.016) TCGA-AD-6890-01 5 162944550 162944550 T A MAT2B Intron 0.20 TCGA-AD-6890-01 5 168180893 168180893 C T SLIT3 Missense_Mutation p.R602H 0.29 tolerated(0.06) probably_damaging(0.915) TCGA-AD-6890-01 5 176793263 176793263 C A RGS14 Missense_Mutation p.S51R 0.29 deleterious(0.01) possibly_damaging(0.544) TCGA-AD-6890-01 5 644520 644520 C T CEP72 Missense_Mutation p.T549M 0.25 deleterious(0.02) possibly_damaging(0.847) TCGA-AD-6890-01 5 76987495 76987495 T C TBCA Intron 0.19 TCGA-AD-6890-01 6 152651656 152651656 C T SYNE1 Missense_Mutation p.E4722K 0.50 benign(0.084) TCGA-AD-6890-01 6 15496953 15496953 G A JARID2 Silent p.P499P 0.65 TCGA-AD-6890-01 6 169632192 169632192 G A THBS2 Silent p.C678C 0.23 TCGA-AD-6890-01 6 30919513 30919513 C T DPCR1 Missense_Mutation p.T1091M 0.27 deleterious(0.02) probably_damaging(0.993) TCGA-AD-6890-01 6 43220515 43220515 C T TTBK1 Silent p.Y49Y 0.61 TCGA-AD-6890-01 6 76540142 76540142 G A MYO6 Missense_Mutation p.A91T 0.42 deleterious(0) unknown(0) TCGA-AD-6890-01 6 87967758 87967758 C T ZNF292 Missense_Mutation p.P1471S 0.44 tolerated(0.11) benign(0.102) TCGA-AD-6890-01 7 100017356 100017356 A - ZCWPW1 Frame_Shift_Del p.L60* 0.27 TCGA-AD-6890-01 7 128641271 128641271 C T TNPO3 Silent p.S238S 0.43 TCGA-AD-6890-01 7 139813312 139813312 T A KDM7A Missense_Mutation p.L439F 0.16 tolerated(0.78) possibly_damaging(0.574) TCGA-AD-6890-01 7 142626640 142626640 C T TRPV5 Missense_Mutation p.A124T 0.25 deleterious(0) probably_damaging(0.942) TCGA-AD-6890-01 7 146829418 146829418 C T CNTNAP2 Missense_Mutation p.R389W 0.39 tolerated(0.13) possibly_damaging(0.786) TCGA-AD-6890-01 7 38725582 38725582 C A FAM183B Missense_Mutation p.R8S 0.42 deleterious(0) benign(0.049) TCGA-AD-6890-01 7 4169592 4169592 G A SDK1 Missense_Mutation p.R1331Q 0.44 tolerated(0.2) benign(0.041) TCGA-AD-6890-01 7 44104803 44104804 - C PGAM2 Frame_Shift_Ins p.E109Gfs*29 0.17 TCGA-AD-6890-01 7 48311513 48311513 C T ABCA13 Silent p.D750D 0.32 TCGA-AD-6890-01 7 54636852 54636852 G A VSTM2A 3'UTR 0.16 TCGA-AD-6890-01 8 10470131 10470131 G A RP1L1 Missense_Mutation p.R493W 0.20 benign(0.005) TCGA-AD-6890-01 8 131792811 131792811 G A ADCY8 Missense_Mutation p.A1194V 0.19 tolerated(0.05) benign(0.058) TCGA-AD-6890-01 8 25287303 25287303 T C KCTD9 3'UTR 0.21 TCGA-AD-6890-01 8 77776548 77776548 C T ZFHX4 Missense_Mutation p.A3533V 0.20 probably_damaging(0.987) TCGA-AD-6890-01 9 109688117 109688117 G T ZNF462 Nonsense_Mutation p.E642* 0.40 TCGA-AD-6890-01 9 118164500 118164500 C T DEC1 3'UTR 0.13 TCGA-AD-6890-01 9 125659815 125659815 A C RC3H2 5'UTR 0.58 TCGA-AD-6890-01 X 105449568 105449568 T A MUM1L1 Missense_Mutation p.I48N 0.28 deleterious(0) possibly_damaging(0.791) TCGA-AD-6890-01 X 107403865 107403865 G C COL4A6 Silent p.G1452G 0.47 TCGA-AD-6890-01 X 119512629 119512629 G A ATP1B4 Splice_Site p.X304_splice 0.10 TCGA-AD-6890-01 X 135431480 135431480 C A GPR112 Missense_Mutation p.S1872Y 0.27 deleterious(0) probably_damaging(0.921) TCGA-AD-6890-01 X 153925458 153925458 A G GAB3 Missense_Mutation p.L459P 0.08 deleterious(0) probably_damaging(0.996) TCGA-AD-6890-01 X 63411366 63411366 G A AMER1 Nonsense_Mutation p.R601* 0.62 TCGA-AD-6890-01 Y 16845408 16845408 T - NLGN4Y Intron 0.52 TCGA-AD-6895-01 10 101090548 101090548 G T CNNM1 Missense_Mutation p.E468D 0.25 tolerated(0.09) probably_damaging(0.978) TCGA-AD-6895-01 10 101090649 101090649 A T CNNM1 Missense_Mutation p.Y502F 0.41 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 10 101295029 101295029 G A NKX2-3 Missense_Mutation p.A216T 0.30 tolerated(0.21) benign(0.001) TCGA-AD-6895-01 10 102267231 102267231 C T SEC31B Missense_Mutation p.D245N 0.28 deleterious(0) probably_damaging(0.971) TCGA-AD-6895-01 10 102762419 102762419 C G LZTS2 Missense_Mutation p.P42A 0.14 tolerated(0.36) benign(0) TCGA-AD-6895-01 10 102789779 102789779 G A PDZD7 Silent p.R66R 0.28 TCGA-AD-6895-01 10 102795280 102795280 C T SFXN3 Missense_Mutation p.T67I 0.16 deleterious(0.01) possibly_damaging(0.905) TCGA-AD-6895-01 10 103339475 103339475 C T POLL Missense_Mutation p.R488H 0.15 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 10 103530135 103530135 G A FGF8 Missense_Mutation p.T229M 0.22 deleterious(0.01) possibly_damaging(0.852) TCGA-AD-6895-01 10 103900021 103900021 C T PPRC1 Missense_Mutation p.P586S 0.31 deleterious_low_confidence(0.04) benign(0.368) TCGA-AD-6895-01 10 104416963 104416963 C G TRIM8 Nonsense_Mutation p.S503* 0.21 TCGA-AD-6895-01 10 105037712 105037712 C T INA Silent p.A248A 0.35 TCGA-AD-6895-01 10 105038005 105038005 G A INA Missense_Mutation p.R346Q 0.20 deleterious(0.01) possibly_damaging(0.521) TCGA-AD-6895-01 10 105238874 105238874 G A CALHM3 5'UTR 0.20 TCGA-AD-6895-01 10 105795271 105795271 G A COL17A1 Missense_Mutation p.P1157S 0.27 probably_damaging(0.998) TCGA-AD-6895-01 10 105815651 105815651 C A COL17A1 Missense_Mutation p.G526C 0.35 unknown(0) TCGA-AD-6895-01 10 108447970 108447970 C - SORCS1 Frame_Shift_Del p.D514Tfs*16 0.24 TCGA-AD-6895-01 10 108466376 108466376 C T SORCS1 Missense_Mutation p.R387Q 0.23 tolerated(0.2) possibly_damaging(0.627) TCGA-AD-6895-01 10 111860545 111860545 T C ADD3 Missense_Mutation p.L45P 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-AD-6895-01 10 112356173 112356173 C T SMC3 Missense_Mutation p.R661W 0.20 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 10 112540592 112540592 G T RBM20 Silent p.S75S 0.22 TCGA-AD-6895-01 10 112837982 112837982 C T ADRA2A Silent p.S76S 0.18 TCGA-AD-6895-01 10 112838029 112838029 C T ADRA2A Missense_Mutation p.S92L 0.21 deleterious(0) probably_damaging(0.986) TCGA-AD-6895-01 10 112838297 112838297 C T ADRA2A Silent p.F181F 0.25 TCGA-AD-6895-01 10 112839887 112839887 T - ADRA2A 3'UTR 0.18 TCGA-AD-6895-01 10 115804599 115804599 C T ADRB1 Silent p.P236P 0.12 TCGA-AD-6895-01 10 120353836 120353836 G A PRLHR Silent p.A307A 0.50 TCGA-AD-6895-01 10 121578933 121578933 C T INPP5F Intron 0.25 TCGA-AD-6895-01 10 12208880 12208880 T G NUDT5 3'UTR 0.44 TCGA-AD-6895-01 10 123659396 123659396 C T ATE1 Intron 0.29 TCGA-AD-6895-01 10 123842738 123842738 G - TACC2 Frame_Shift_Del p.V243Wfs*6 0.20 TCGA-AD-6895-01 10 123844510 123844510 C T TACC2 Missense_Mutation p.P832L 0.21 benign(0.193) TCGA-AD-6895-01 10 124390770 124390770 C T DMBT1 Missense_Mutation p.R1978C 0.29 tolerated(0.07) probably_damaging(0.959) TCGA-AD-6895-01 10 127412385 127412385 A - EDRF1 Frame_Shift_Del p.K132Nfs*3 0.16 TCGA-AD-6895-01 10 12870873 12870873 C T CAMK1D Missense_Mutation p.S382F 0.31 deleterious_low_confidence(0.01) benign(0.094) TCGA-AD-6895-01 10 131646712 131646713 - A EBF3 Frame_Shift_Ins p.Q349Sfs*13 0.19 TCGA-AD-6895-01 10 131762007 131762007 G A EBF3 Missense_Mutation p.P9L 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.711) TCGA-AD-6895-01 10 131762071 131762071 C T EBF3 5'UTR 0.38 TCGA-AD-6895-01 10 131959247 131959247 A C GLRX3 Missense_Mutation p.Q155P 0.18 deleterious(0.05) possibly_damaging(0.85) TCGA-AD-6895-01 10 133949565 133949565 G T JAKMIP3 Missense_Mutation p.Q367H 0.23 deleterious(0) possibly_damaging(0.693) TCGA-AD-6895-01 10 134218926 134218926 G A PWWP2B Missense_Mutation p.A308T 0.33 tolerated(0.25) benign(0.003) TCGA-AD-6895-01 10 135093332 135093332 G - TUBGCP2 Frame_Shift_Del p.Q911Kfs*25 0.27 TCGA-AD-6895-01 10 13658467 13658467 A T RP11-295P9.3 Missense_Mutation p.I165F 0.35 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 10 13698819 13698819 C T FRMD4A Missense_Mutation p.V924I 0.40 deleterious(0.01) probably_damaging(0.981) TCGA-AD-6895-01 10 13743383 13743383 G A FRMD4A Missense_Mutation p.A311V 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-AD-6895-01 10 15120522 15120522 C T ACBD7 3'UTR 0.27 TCGA-AD-6895-01 10 16562711 16562711 G A C1QL3 Silent p.A118A 0.38 TCGA-AD-6895-01 10 17088075 17088075 T - CUBN Frame_Shift_Del p.K1116Nfs*26 0.19 TCGA-AD-6895-01 10 17373507 17373507 A T ST8SIA6 Missense_Mutation p.V141D 0.33 deleterious(0) possibly_damaging(0.873) TCGA-AD-6895-01 10 17756587 17756587 G A STAM Silent p.A477A 0.21 TCGA-AD-6895-01 10 18112083 18112083 G A MRC1 Missense_Mutation p.R34H 0.56 tolerated(0.13) probably_damaging(0.982) TCGA-AD-6895-01 10 23730996 23730996 T - OTUD1 3'UTR 0.20 TCGA-AD-6895-01 10 24880209 24880210 TA - ARHGAP21 Frame_Shift_Del p.I1365Rfs*23 0.20 TCGA-AD-6895-01 10 25701392 25701392 G A GPR158 Missense_Mutation p.R442H 0.18 deleterious(0) probably_damaging(0.991) TCGA-AD-6895-01 10 26785260 26785260 C G APBB1IP Missense_Mutation p.P34A 0.37 tolerated(0.13) benign(0.015) TCGA-AD-6895-01 10 27324385 27324385 G A ANKRD26 Silent p.S998S 0.06 TCGA-AD-6895-01 10 27964310 27964310 T C MKX Missense_Mutation p.T303A 0.29 tolerated(0.15) probably_damaging(0.97) TCGA-AD-6895-01 10 28822515 28822515 A G WAC Missense_Mutation p.M3V 0.30 deleterious(0) benign(0.003) TCGA-AD-6895-01 10 292894 292894 C T ZMYND11 Missense_Mutation p.S380F 0.27 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 10 30605092 30605092 G A MTPAP Missense_Mutation p.R423C 0.23 tolerated(0.1) benign(0.006) TCGA-AD-6895-01 10 3189835 3189835 C T PITRM1 Missense_Mutation p.A723T 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 10 33199309 33199309 T A ITGB1 Missense_Mutation p.N669I 0.05 tolerated(0.24) possibly_damaging(0.616) TCGA-AD-6895-01 10 34408584 34408584 C T PARD3 Missense_Mutation p.E1212K 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-AD-6895-01 10 43318660 43318660 G A BMS1 Missense_Mutation p.R1076Q 0.23 tolerated(0.14) possibly_damaging(0.464) TCGA-AD-6895-01 10 43326443 43326443 C T BMS1 Missense_Mutation p.R1250W 0.38 deleterious(0) possibly_damaging(0.513) TCGA-AD-6895-01 10 43606686 43606686 C T RET Missense_Mutation p.A432V 0.28 tolerated(0.11) benign(0.046) TCGA-AD-6895-01 10 45924196 45924196 T C ALOX5 Missense_Mutation p.V322A 0.28 deleterious(0.01) possibly_damaging(0.726) TCGA-AD-6895-01 10 52834501 52834501 T A PRKG1 Missense_Mutation p.S51T 0.27 tolerated(0.09) probably_damaging(0.918) TCGA-AD-6895-01 10 5499014 5499014 T - NET1 3'UTR 0.26 TCGA-AD-6895-01 10 55616974 55616974 G A PCDH15 Missense_Mutation p.P1256L 0.24 deleterious(0) probably_damaging(0.967) TCGA-AD-6895-01 10 5682581 5682581 G A ASB13 3'UTR 0.29 TCGA-AD-6895-01 10 5931162 5931162 C T ANKRD16 Silent p.V52V 0.46 TCGA-AD-6895-01 10 60154896 60154896 C T TFAM 3'UTR 0.42 TCGA-AD-6895-01 10 61830475 61830475 G A ANK3 Silent p.N3388N 0.25 TCGA-AD-6895-01 10 63662034 63662034 T A ARID5B Nonsense_Mutation p.C46* 0.18 TCGA-AD-6895-01 10 64415162 64415162 T CC ZNF365 Intron 0.40 TCGA-AD-6895-01 10 71267420 71267420 T G TSPAN15 3'UTR 0.27 TCGA-AD-6895-01 10 73082782 73082782 G A SLC29A3 Missense_Mutation p.G91R 0.17 tolerated(0.59) benign(0.002) TCGA-AD-6895-01 10 73767187 73767187 G A CHST3 Missense_Mutation p.R133H 0.29 deleterious(0.01) possibly_damaging(0.9) TCGA-AD-6895-01 10 73767775 73767775 G C CHST3 Missense_Mutation p.G329A 0.27 deleterious(0.05) probably_damaging(0.969) TCGA-AD-6895-01 10 74104788 74104788 G A DNAJB12 Silent p.T111T 0.27 TCGA-AD-6895-01 10 74885040 74885041 TG - NUDT13 Intron 0.23 TCGA-AD-6895-01 10 75204379 75204379 A - PPP3CB Intron 0.26 TCGA-AD-6895-01 10 75408420 75408420 C G SYNPO2L Silent p.T330T 0.23 TCGA-AD-6895-01 10 76781825 76781827 GAA - KAT6B In_Frame_Del p.E1076del 0.14 TCGA-AD-6895-01 10 78673837 78673837 G A KCNMA1 Intron 0.29 TCGA-AD-6895-01 10 8100514 8100514 C T GATA3 Missense_Mutation p.P163L 0.29 deleterious(0) probably_damaging(0.957) TCGA-AD-6895-01 10 81274792 81274792 T - EIF5AL1 3'UTR 0.22 TCGA-AD-6895-01 10 85912239 85912239 C T GHITM 3'UTR 0.31 TCGA-AD-6895-01 10 85967999 85967999 G A CDHR1 Missense_Mutation p.D345N 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-AD-6895-01 10 87487770 87487770 G T GRID1 Missense_Mutation p.Q459K 0.32 tolerated(0.68) possibly_damaging(0.601) TCGA-AD-6895-01 10 88213494 88213494 C T WAPAL Missense_Mutation p.V918I 0.22 tolerated(0.42) benign(0.223) TCGA-AD-6895-01 10 88835765 88835765 C - GLUD1 Frame_Shift_Del p.G181Vfs*29 0.11 TCGA-AD-6895-01 10 89516601 89516601 G A ATAD1 Nonsense_Mutation p.R304* 0.25 TCGA-AD-6895-01 10 91098507 91098507 G T IFIT3 Missense_Mutation p.R32M 0.35 tolerated(0.22) benign(0.258) TCGA-AD-6895-01 10 91099706 91099706 C T IFIT3 Silent p.L432L 0.36 TCGA-AD-6895-01 10 91203598 91203598 A - SLC16A12 Frame_Shift_Del p.F73Lfs*22 0.24 TCGA-AD-6895-01 10 92508879 92508879 C T HTR7 Missense_Mutation p.V338M 0.29 tolerated(0.08) benign(0.094) TCGA-AD-6895-01 10 95517985 95517985 G A LGI1 Silent p.A28A 0.09 TCGA-AD-6895-01 10 95720015 95720015 C T PIPSL RNA 0.27 TCGA-AD-6895-01 10 96162496 96162496 C T TBC1D12 Silent p.G42G 0.31 TCGA-AD-6895-01 10 96162525 96162525 C T TBC1D12 Missense_Mutation p.A52V 0.32 tolerated_low_confidence(0.12) benign(0.016) TCGA-AD-6895-01 10 96602627 96602627 G A CYP2C19 Missense_Mutation p.G332D 0.25 deleterious(0) probably_damaging(0.986) TCGA-AD-6895-01 10 97684580 97684580 C T C10orf131 Silent p.S65S 0.27 TCGA-AD-6895-01 10 98192713 98192713 C T TLL2 Missense_Mutation p.R124Q 0.26 tolerated(0.62) benign(0) TCGA-AD-6895-01 10 99006085 99006085 A G ARHGAP19 Missense_Mutation p.Y313H 0.30 tolerated(0.07) probably_damaging(0.971) TCGA-AD-6895-01 10 99664498 99664498 G A CRTAC1 Silent p.I308I 0.38 TCGA-AD-6895-01 11 1025856 1025856 G A MUC6 Silent p.I916I 0.27 TCGA-AD-6895-01 11 1026422 1026422 G A MUC6 Silent p.A817A 0.31 TCGA-AD-6895-01 11 103814332 103814332 G A PDGFD Missense_Mutation p.A207V 0.26 tolerated(0.19) benign(0.035) TCGA-AD-6895-01 11 104879627 104879627 C T CASP5 Missense_Mutation p.V43M 0.17 deleterious_low_confidence(0.01) benign(0.32) TCGA-AD-6895-01 11 10615137 10615137 G A MRVI1 Missense_Mutation p.R693C 0.23 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 11 107396278 107396278 T A ALKBH8 Missense_Mutation p.S307C 0.21 tolerated(0.05) possibly_damaging(0.656) TCGA-AD-6895-01 11 109295441 109295441 G A C11orf87 3'UTR 0.23 TCGA-AD-6895-01 11 111367846 111367847 - T BTG4 Intron 0.33 TCGA-AD-6895-01 11 111473305 111473305 C G SIK2 Silent p.G6G 0.28 TCGA-AD-6895-01 11 116619077 116619077 C T BUD13 3'UTR 0.32 TCGA-AD-6895-01 11 117265118 117265118 G A CEP164 Missense_Mutation p.R890H 0.22 deleterious(0.01) benign(0.187) TCGA-AD-6895-01 11 117340686 117340686 C - DSCAML1 Frame_Shift_Del p.M1051Wfs*8 0.27 TCGA-AD-6895-01 11 117870326 117870326 C T IL10RA Silent p.P569P 0.30 TCGA-AD-6895-01 11 117975436 117975436 A G TMPRSS4 Missense_Mutation p.Q114R 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-AD-6895-01 11 118404167 118404167 C T TMEM25 Silent p.L236L 0.36 TCGA-AD-6895-01 11 118422963 118422963 G A IFT46 Missense_Mutation p.R242C 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-AD-6895-01 11 118772020 118772020 C T BCL9L Missense_Mutation p.G811D 0.36 possibly_damaging(0.696) TCGA-AD-6895-01 11 119206049 119206049 G A RNF26 Missense_Mutation p.V73I 0.21 tolerated(0.26) benign(0.007) TCGA-AD-6895-01 11 119996467 119996467 C T TRIM29 Missense_Mutation p.R422H 0.22 deleterious(0) possibly_damaging(0.72) TCGA-AD-6895-01 11 120082124 120082124 A T OAF Missense_Mutation p.E46V 0.38 deleterious(0) possibly_damaging(0.824) TCGA-AD-6895-01 11 124120558 124120558 A T OR8G1 Missense_Mutation p.T46S 0.28 deleterious_low_confidence(0.01) benign(0.072) TCGA-AD-6895-01 11 124735538 124735538 A T ROBO3 Missense_Mutation p.D22V 0.24 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-AD-6895-01 11 124761327 124761327 G A ROBO4 Missense_Mutation p.R606C 0.22 tolerated(0.19) benign(0.003) TCGA-AD-6895-01 11 124908478 124908478 C T CCDC15 Nonsense_Mutation p.Q855* 0.21 TCGA-AD-6895-01 11 125472304 125472304 G T STT3A Nonsense_Mutation p.G86* 0.17 TCGA-AD-6895-01 11 1270362 1270362 G A MUC5B Silent p.T4084T 0.24 TCGA-AD-6895-01 11 129725756 129725758 TCA - TMEM45B In_Frame_Del p.I182del 0.25 TCGA-AD-6895-01 11 130297696 130297696 C T ADAMTS8 Silent p.P162P 0.23 TCGA-AD-6895-01 11 134121181 134121181 C T THYN1 Missense_Mutation p.R22H 0.10 tolerated(0.07) benign(0.008) TCGA-AD-6895-01 11 1492540 1492540 A G MOB2 Missense_Mutation p.F159L 0.16 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 11 18159320 18159320 C A MRGPRX3 Missense_Mutation p.L191I 0.10 deleterious(0.01) probably_damaging(0.967) TCGA-AD-6895-01 11 18322447 18322447 T A HPS5 Missense_Mutation p.T305S 0.28 tolerated(0.15) probably_damaging(0.96) TCGA-AD-6895-01 11 1862070 1862070 G A TNNI2 Missense_Mutation p.A70T 0.35 tolerated(0.28) benign(0.03) TCGA-AD-6895-01 11 20691198 20691198 G A NELL1 5'UTR 0.31 TCGA-AD-6895-01 11 2606518 2606518 C T KCNQ1 Missense_Mutation p.A370V 0.33 deleterious(0.03) possibly_damaging(0.691) TCGA-AD-6895-01 11 26484621 26484621 A G ANO3 Missense_Mutation p.T120A 0.30 tolerated(0.68) benign(0) TCGA-AD-6895-01 11 28058157 28058157 C T KIF18A Missense_Mutation p.R668Q 0.24 deleterious(0.02) possibly_damaging(0.813) TCGA-AD-6895-01 11 281463 281463 C T NLRP6 Missense_Mutation p.R577W 0.38 deleterious(0) possibly_damaging(0.794) TCGA-AD-6895-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.21 TCGA-AD-6895-01 11 30925086 30925086 G T DCDC1 Missense_Mutation p.Q1485K 0.23 tolerated_low_confidence(0.52) benign(0.092) TCGA-AD-6895-01 11 32414302 32414302 C T WT1 Splice_Site p.X417_splice 0.24 TCGA-AD-6895-01 11 32450101 32450101 C T WT1 Silent p.A237A 0.30 TCGA-AD-6895-01 11 32452253 32452253 G A WT1 Intron 0.44 TCGA-AD-6895-01 11 33731540 33731540 G C CD59 3'UTR 0.36 TCGA-AD-6895-01 11 34937721 34937721 C T PDHX 5'Flank 0.70 TCGA-AD-6895-01 11 400076 400077 - C PKP3 Frame_Shift_Ins p.L464Pfs*224 0.43 TCGA-AD-6895-01 11 40137183 40137183 T - LRRC4C Frame_Shift_Del p.K220Nfs*2 0.22 TCGA-AD-6895-01 11 40137193 40137193 G A LRRC4C Missense_Mutation p.P217L 0.12 deleterious(0.04) probably_damaging(0.923) TCGA-AD-6895-01 11 428766 428766 A G ANO9 Missense_Mutation p.S326P 0.29 deleterious(0.01) probably_damaging(1) TCGA-AD-6895-01 11 43876354 43876354 T C HSD17B12 Silent p.S258S 0.27 TCGA-AD-6895-01 11 44957190 44957190 C T TP53I11 Missense_Mutation p.A120T 0.42 tolerated(0.44) benign(0.176) TCGA-AD-6895-01 11 45924595 45924595 C T MAPK8IP1 Missense_Mutation p.A426V 0.23 tolerated(0.06) probably_damaging(0.941) TCGA-AD-6895-01 11 4608061 4608061 C T OR52I2 Missense_Mutation p.R7W 0.31 tolerated_low_confidence(0.12) benign(0.016) TCGA-AD-6895-01 11 4615525 4615525 T C OR52I1 Missense_Mutation p.V86A 0.26 deleterious(0) possibly_damaging(0.491) TCGA-AD-6895-01 11 4675242 4675242 T C OR51E1 3'UTR 0.25 TCGA-AD-6895-01 11 46908033 46908033 C T LRP4 Missense_Mutation p.S756N 0.30 tolerated(0.19) possibly_damaging(0.696) TCGA-AD-6895-01 11 46908039 46908039 C T LRP4 Missense_Mutation p.R754Q 0.35 deleterious(0.04) benign(0.425) TCGA-AD-6895-01 11 46908045 46908045 A T LRP4 Missense_Mutation p.I752N 0.32 deleterious(0) possibly_damaging(0.885) TCGA-AD-6895-01 11 47611523 47611523 G A C1QTNF4 Silent p.R280R 0.32 TCGA-AD-6895-01 11 47746278 47746278 C T FNBP4 Missense_Mutation p.M687I 0.24 tolerated(0.22) benign(0.003) TCGA-AD-6895-01 11 48238499 48238499 G A OR4B1 Silent p.T46T 0.33 TCGA-AD-6895-01 11 48286124 48286124 T C OR4X1 Missense_Mutation p.C238R 0.22 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 11 5013348 5013348 T G MMP26 Missense_Mutation p.H250Q 0.27 tolerated(0.72) benign(0.001) TCGA-AD-6895-01 11 55135613 55135613 C - OR4A15 Frame_Shift_Del p.M87Cfs*11 0.14 TCGA-AD-6895-01 11 5529961 5529961 A G UBQLN3 Silent p.N276N 0.27 TCGA-AD-6895-01 11 55406748 55406748 C T OR4P4 Silent p.L305L 0.30 TCGA-AD-6895-01 11 55873208 55873208 C T OR8H2 Silent p.S230S 0.22 TCGA-AD-6895-01 11 57311109 57311109 C T SMTNL1 Missense_Mutation p.P267S 0.26 deleterious(0) benign(0.252) TCGA-AD-6895-01 11 57314069 57314069 A G SMTNL1 Silent p.A446A 0.31 TCGA-AD-6895-01 11 57576842 57576842 A T CTNND1 Missense_Mutation p.N780I 0.28 deleterious(0.01) possibly_damaging(0.811) TCGA-AD-6895-01 11 57947111 57947111 C T OR9Q1 Silent p.H65H 0.32 TCGA-AD-6895-01 11 60102354 60102354 G A MS4A6E 5'UTR 0.28 TCGA-AD-6895-01 11 60620625 60620625 G T PTGDR2 Missense_Mutation p.P191T 0.30 tolerated(0.05) benign(0.052) TCGA-AD-6895-01 11 61059032 61059032 G - VWCE Frame_Shift_Del p.H43Tfs*89 0.33 TCGA-AD-6895-01 11 612798 612798 C T IRF7 Silent p.L466L 0.50 TCGA-AD-6895-01 11 61505207 61505207 G A DAGLA Silent p.L521L 0.19 TCGA-AD-6895-01 11 61584198 61584198 C A FADS1 Silent p.A68A 0.18 TCGA-AD-6895-01 11 61595819 61595819 G A FADS2 5'UTR 0.30 TCGA-AD-6895-01 11 62381330 62381330 C T ROM1 Missense_Mutation p.R193W 0.25 deleterious(0) possibly_damaging(0.733) TCGA-AD-6895-01 11 6245376 6245376 C T FAM160A2 Missense_Mutation p.A81T 0.24 tolerated(0.27) benign(0.314) TCGA-AD-6895-01 11 6281299 6281299 C T CCKBR Silent p.A47A 0.19 TCGA-AD-6895-01 11 63381609 63381609 C T PLA2G16 5'UTR 0.18 TCGA-AD-6895-01 11 63681430 63681430 C T RCOR2 Missense_Mutation p.R296H 0.27 deleterious(0) probably_damaging(0.968) TCGA-AD-6895-01 11 63681730 63681730 C T RCOR2 Intron 0.45 TCGA-AD-6895-01 11 63682169 63682169 G T RCOR2 Silent p.A146A 0.38 TCGA-AD-6895-01 11 63965011 63965011 T A STIP1 Nonsense_Mutation p.C282* 0.09 TCGA-AD-6895-01 11 63967492 63967492 C T STIP1 Silent p.N368N 0.24 TCGA-AD-6895-01 11 64021917 64021917 C T PLCB3 Missense_Mutation p.R44C 0.21 deleterious(0.03) probably_damaging(0.944) TCGA-AD-6895-01 11 64137816 64137816 C A RPS6KA4 Silent p.A639A 0.24 TCGA-AD-6895-01 11 6417140 6417140 A G APBB1 Missense_Mutation p.V612A 0.20 deleterious(0) probably_damaging(0.992) TCGA-AD-6895-01 11 64361006 64361006 C T SLC22A12 Silent p.G212G 0.36 TCGA-AD-6895-01 11 64390265 64390265 C T NRXN2 Missense_Mutation p.R1378H 0.32 deleterious(0) benign(0.015) TCGA-AD-6895-01 11 64410186 64410186 C T NRXN2 Intron 0.16 TCGA-AD-6895-01 11 64535057 64535057 C T SF1 Missense_Mutation p.G568D 0.28 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-AD-6895-01 11 64673626 64673626 G A ATG2A Missense_Mutation p.R1075C 0.16 deleterious(0) probably_damaging(0.99) TCGA-AD-6895-01 11 64875106 64875106 C T VPS51 Missense_Mutation p.R138W 0.18 tolerated(0.09) possibly_damaging(0.903) TCGA-AD-6895-01 11 64972290 64972290 C T CAPN1 Silent p.F434F 0.29 TCGA-AD-6895-01 11 65000742 65000742 G A SLC22A20 RNA 0.33 TCGA-AD-6895-01 11 65088467 65088467 C T CDC42EP2 Missense_Mutation p.P33L 0.29 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 11 65089440 65089440 G T CDC42EP2 3'UTR 0.35 TCGA-AD-6895-01 11 65617921 65617923 AAG - SNX32 In_Frame_Del p.K133del 0.29 TCGA-AD-6895-01 11 65622836 65622836 C T CFL1 Missense_Mutation p.V158I 0.11 tolerated(0.42) benign(0.005) TCGA-AD-6895-01 11 65649778 65649778 C T CTSW Missense_Mutation p.A140V 0.27 tolerated(0.67) benign(0.02) TCGA-AD-6895-01 11 66045978 66045978 C T CNIH2 Silent p.C17C 0.36 TCGA-AD-6895-01 11 66083221 66083221 C A CD248 Missense_Mutation p.E426D 0.25 tolerated(0.58) benign(0.003) TCGA-AD-6895-01 11 66188695 66188695 G A NPAS4 Silent p.Q15Q 0.10 TCGA-AD-6895-01 11 66192261 66192261 C T NPAS4 Missense_Mutation p.R634C 0.32 deleterious(0.01) possibly_damaging(0.891) TCGA-AD-6895-01 11 66240860 66240860 G A PELI3 Missense_Mutation p.R202H 0.41 deleterious(0.05) probably_damaging(0.997) TCGA-AD-6895-01 11 66243390 66243390 C T PELI3 Missense_Mutation p.R388C 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-AD-6895-01 11 66276649 66276649 T A DPP3 Missense_Mutation p.I714N 0.28 tolerated(0.59) benign(0.011) TCGA-AD-6895-01 11 6629392 6629392 C - ILK Frame_Shift_Del p.L71Cfs*26 0.25 TCGA-AD-6895-01 11 66328722 66328722 G A CTSF 3'Flank 0.19 TCGA-AD-6895-01 11 66333869 66333869 C T CTSF Missense_Mutation p.R205Q 0.30 tolerated(1) benign(0.003) TCGA-AD-6895-01 11 6644735 6644735 G A DCHS1 Silent p.L2724L 0.21 TCGA-AD-6895-01 11 6652892 6652892 C T DCHS1 Silent p.T1210T 0.28 TCGA-AD-6895-01 11 66620291 66620291 G A PC Silent p.N510N 0.25 TCGA-AD-6895-01 11 66625510 66625510 C T LRFN4 Missense_Mutation p.R99C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 11 66812106 66812106 C A SYT12 Missense_Mutation p.L294I 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-AD-6895-01 11 67209530 67209530 C T CORO1B Silent p.T77T 0.23 TCGA-AD-6895-01 11 67290825 67290825 C - CABP2 5'UTR 0.23 TCGA-AD-6895-01 11 67803782 67803782 C T NDUFS8 Silent p.I145I 0.35 TCGA-AD-6895-01 11 67817465 67817465 G A TCIRG1 Missense_Mutation p.A684T 0.28 tolerated(0.41) benign(0.01) TCGA-AD-6895-01 11 70653230 70653230 C T SHANK2 Missense_Mutation p.E515K 0.24 tolerated(0.43) benign(0.283) TCGA-AD-6895-01 11 7078926 7078926 A T NLRP14 Silent p.L770L 0.27 TCGA-AD-6895-01 11 70805604 70805604 C T SHANK2 Silent p.A241A 0.34 TCGA-AD-6895-01 11 71238597 71238598 - G KRTAP5-7 Frame_Shift_Ins p.C87Lfs*13 0.24 TCGA-AD-6895-01 11 71726012 71726012 C T NUMA1 Missense_Mutation p.R846H 0.34 possibly_damaging(0.855) TCGA-AD-6895-01 11 71819878 71819878 C T LRTOMT Silent p.G261G 0.29 TCGA-AD-6895-01 11 72466010 72466010 C T STARD10 Missense_Mutation p.E270K 0.19 deleterious(0) possibly_damaging(0.905) TCGA-AD-6895-01 11 72470396 72470396 C T STARD10 Missense_Mutation p.E80K 0.22 tolerated(0.06) benign(0.046) TCGA-AD-6895-01 11 73008783 73008783 T C P2RY6 3'UTR 0.20 TCGA-AD-6895-01 11 73020968 73020968 C T ARHGEF17 Missense_Mutation p.R429W 0.36 tolerated_low_confidence(0.15) probably_damaging(0.965) TCGA-AD-6895-01 11 74977038 74977038 G A ARRB1 3'UTR 0.33 TCGA-AD-6895-01 11 76063586 76063586 G A PRKRIR Missense_Mutation p.A203V 0.36 deleterious(0) probably_damaging(0.989) TCGA-AD-6895-01 11 76255441 76255441 A T C11orf30 Nonsense_Mutation p.K950* 0.36 TCGA-AD-6895-01 11 76814137 76814137 G A OMP Silent p.S84S 0.22 TCGA-AD-6895-01 11 76901847 76901847 G A MYO7A Missense_Mutation p.A1286T 0.19 tolerated(0.4) possibly_damaging(0.508) TCGA-AD-6895-01 11 823837 823837 C T PNPLA2 Missense_Mutation p.P301S 0.14 tolerated(0.45) possibly_damaging(0.468) TCGA-AD-6895-01 11 85396906 85396906 G A CCDC89 Missense_Mutation p.R90C 0.37 deleterious(0.05) probably_damaging(0.998) TCGA-AD-6895-01 11 86209056 86209056 C T ME3 Silent p.V218V 0.30 TCGA-AD-6895-01 11 88242129 88242129 G A GRM5 Silent p.G1090G 0.32 TCGA-AD-6895-01 11 92531407 92531407 C T FAT3 Missense_Mutation p.A1743V 0.33 probably_damaging(1) TCGA-AD-6895-01 11 94153208 94153209 - A MRE11A 3'UTR 0.24 TCGA-AD-6895-01 11 94800589 94800589 G A SRSF8 Missense_Mutation p.D67N 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AD-6895-01 11 9530342 9530342 G A ZNF143 Missense_Mutation p.D442N 0.29 deleterious(0.02) probably_damaging(0.964) TCGA-AD-6895-01 11 96125613 96125613 G A JRKL 3'UTR 0.24 TCGA-AD-6895-01 12 100378031 100378031 C - ANKS1B 5'Flank 0.29 TCGA-AD-6895-01 12 100606260 100606260 A G ACTR6 Missense_Mutation p.D235G 0.21 deleterious(0) probably_damaging(0.925) TCGA-AD-6895-01 12 10165478 10165478 G A CLEC12B Missense_Mutation p.M62I 0.23 tolerated(1) benign(0) TCGA-AD-6895-01 12 101880233 101880234 - A SPIC Frame_Shift_Ins p.N146Kfs*50 0.20 TCGA-AD-6895-01 12 102122661 102122661 T A SYCP3 3'UTR 0.25 TCGA-AD-6895-01 12 102155482 102155482 C T GNPTAB Silent p.R925R 0.26 TCGA-AD-6895-01 12 102811733 102811733 C A IGF1 Missense_Mutation p.G151C 0.27 deleterious(0.03) possibly_damaging(0.817) TCGA-AD-6895-01 12 102811770 102811770 T C IGF1 Silent p.P138P 0.27 TCGA-AD-6895-01 12 104327921 104327921 A T HSP90B1 Missense_Mutation p.Y200F 0.28 deleterious(0) possibly_damaging(0.887) TCGA-AD-6895-01 12 107393588 107393588 C T CRY1 Missense_Mutation p.R293H 0.29 deleterious(0) probably_damaging(0.994) TCGA-AD-6895-01 12 108082252 108082252 C T PWP1 Missense_Mutation p.R34C 0.25 deleterious(0) benign(0.432) TCGA-AD-6895-01 12 108170329 108170329 C - ASCL4 3'UTR 0.16 TCGA-AD-6895-01 12 108985733 108985733 G A TMEM119 Missense_Mutation p.R143W 0.13 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 12 109719563 109719563 G A FOXN4 Missense_Mutation p.R315W 0.39 deleterious(0) probably_damaging(0.995) TCGA-AD-6895-01 12 110221343 110221343 G - TRPV4 3'UTR 0.28 TCGA-AD-6895-01 12 111786115 111786115 G A CUX2 Missense_Mutation p.E1483K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 12 111800967 111800967 G A FAM109A Missense_Mutation p.R102C 0.22 deleterious(0) probably_damaging(0.976) TCGA-AD-6895-01 12 112926872 112926872 C T PTPN11 Missense_Mutation p.R498W 0.08 deleterious(0.01) benign(0.396) TCGA-AD-6895-01 12 113612903 113612903 C - DDX54 Frame_Shift_Del p.G271Afs*41 0.20 TCGA-AD-6895-01 12 115109884 115109884 G A TBX3 Missense_Mutation p.A665V 0.33 tolerated(0.3) benign(0.002) TCGA-AD-6895-01 12 116440811 116440811 G C MED13L Missense_Mutation p.P856A 0.26 tolerated(0.59) unknown(0) TCGA-AD-6895-01 12 117158227 117158228 - A C12orf49 Frame_Shift_Ins p.L98Ffs*8 0.10 TCGA-AD-6895-01 12 119594419 119594419 G A SRRM4 Missense_Mutation p.R551Q 0.32 deleterious_low_confidence(0) unknown(0) TCGA-AD-6895-01 12 12022444 12022444 T A ETV6 Missense_Mutation p.S184T 0.16 tolerated(0.06) possibly_damaging(0.835) TCGA-AD-6895-01 12 12037492 12037492 G A ETV6 Missense_Mutation p.G375R 0.41 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 12 120427939 120427939 G T CCDC64 Silent p.P89P 0.22 TCGA-AD-6895-01 12 121600317 121600317 C - P2RX7 Frame_Shift_Del p.R178Gfs*5 0.31 TCGA-AD-6895-01 12 122255526 122255526 G A SETD1B Silent p.E1050E 0.25 TCGA-AD-6895-01 12 122720396 122720397 - C VPS33A Frame_Shift_Ins p.R460Qfs*17 0.25 TCGA-AD-6895-01 12 123028713 123028713 G A KNTC1 Missense_Mutation p.G189E 0.26 tolerated(0.07) benign(0.002) TCGA-AD-6895-01 12 123333015 123333015 A T HIP1R Missense_Mutation p.I54F 0.39 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 12 12334197 12334197 G A LRP6 Missense_Mutation p.R385C 0.18 deleterious(0) probably_damaging(0.977) TCGA-AD-6895-01 12 124093340 124093340 A C DDX55 Missense_Mutation p.E172A 0.31 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 12 124335508 124335508 G A DNAH10 Missense_Mutation p.R1941H 0.16 probably_damaging(0.99) TCGA-AD-6895-01 12 124383343 124383343 G A DNAH10 Missense_Mutation p.A3090T 0.23 benign(0.002) TCGA-AD-6895-01 12 124824908 124824913 TCCCGG - NCOR2 In_Frame_Del p.D1807_R1808del 0.28 TCGA-AD-6895-01 12 12482967 12482967 G A MANSC1 Silent p.D430D 0.30 TCGA-AD-6895-01 12 129190708 129190708 C T TMEM132C Silent p.D1065D 0.21 TCGA-AD-6895-01 12 12976158 12976158 G A DDX47 Missense_Mutation p.A219T 0.19 deleterious(0.03) benign(0.015) TCGA-AD-6895-01 12 130648269 130648269 G A FZD10 Missense_Mutation p.R261H 0.30 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 12 130922973 130922973 C T RIMBP2 Silent p.T514T 0.33 TCGA-AD-6895-01 12 13526202 13526202 T - C12orf36 Frame_Shift_Del p.K118Rfs*9 0.20 TCGA-AD-6895-01 12 13716680 13716680 G A GRIN2B Silent p.R1164R 0.37 TCGA-AD-6895-01 12 15264307 15264307 A - RERG Frame_Shift_Del p.S55Pfs*5 0.15 TCGA-AD-6895-01 12 15784422 15784422 G A EPS8 Silent p.G666G 0.29 TCGA-AD-6895-01 12 16036492 16036492 C T STRAP Missense_Mutation p.R44C 0.21 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 12 18496286 18496286 C T PIK3C2G Missense_Mutation p.S474L 0.27 tolerated(0.33) benign(0.103) TCGA-AD-6895-01 12 21054394 21054394 T - SLCO1B3 Frame_Shift_Del p.F621Lfs*10 0.25 TCGA-AD-6895-01 12 248100 248100 C T IQSEC3 Missense_Mutation p.A524V 0.38 tolerated(0.42) benign(0.005) TCGA-AD-6895-01 12 25380277 25380277 G T KRAS Missense_Mutation p.Q61K 0.36 deleterious(0.01) benign(0.279) TCGA-AD-6895-01 12 25380278 25380278 A T KRAS Silent p.G60G 0.35 TCGA-AD-6895-01 12 28122359 28122359 G A PTHLH Silent p.C23C 0.25 TCGA-AD-6895-01 12 39087460 39087460 A T CPNE8 Nonsense_Mutation p.L381* 0.20 TCGA-AD-6895-01 12 41337799 41337799 C T CNTN1 Missense_Mutation p.P504S 0.31 tolerated(0.2) benign(0.003) TCGA-AD-6895-01 12 4479531 4479531 C T FGF23 Missense_Mutation p.R245H 0.37 tolerated_low_confidence(0.05) benign(0.002) TCGA-AD-6895-01 12 45784262 45784262 C T ANO6 Missense_Mutation p.A477V 0.11 tolerated(0.63) benign(0.141) TCGA-AD-6895-01 12 46245109 46245111 GTG - ARID2 In_Frame_Del p.G1069del 0.15 TCGA-AD-6895-01 12 4722821 4722821 T A DYRK4 Missense_Mutation p.S489T 0.11 tolerated_low_confidence(0.12) benign(0.02) TCGA-AD-6895-01 12 47629035 47629035 C T PCED1B Silent p.D63D 0.21 TCGA-AD-6895-01 12 48107160 48107160 A T ENDOU Missense_Mutation p.S255T 0.44 tolerated(0.26) benign(0.361) TCGA-AD-6895-01 12 48370701 48370701 C T COL2A1 Missense_Mutation p.G1110D 0.24 unknown(0) TCGA-AD-6895-01 12 48376366 48376367 - G COL2A1 Frame_Shift_Ins p.G741Wfs*29 0.22 TCGA-AD-6895-01 12 49094836 49094836 T A CCNT1 Missense_Mutation p.Q131H 0.28 deleterious(0.01) probably_damaging(0.936) TCGA-AD-6895-01 12 49168294 49168294 G A ADCY6 Missense_Mutation p.P725L 0.28 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 12 49391248 49391248 G A DDN Nonsense_Mutation p.R471* 0.26 TCGA-AD-6895-01 12 49432625 49432625 T A KMT2D Silent p.P2838P 0.28 TCGA-AD-6895-01 12 49729922 49729922 G A C1QL4 Silent p.Y113Y 0.35 TCGA-AD-6895-01 12 50036070 50036070 G A PRPF40B Missense_Mutation p.R646H 0.11 deleterious(0) probably_damaging(0.992) TCGA-AD-6895-01 12 50185661 50185661 T C NCKAP5L Silent p.S1322S 0.20 TCGA-AD-6895-01 12 50503260 50503260 T C GPD1 Silent p.G336G 0.30 TCGA-AD-6895-01 12 51034605 51034605 G - DIP2B Frame_Shift_Del p.G92Efs*63 0.14 TCGA-AD-6895-01 12 51392999 51392999 A - SLC11A2 Frame_Shift_Del p.F240Lfs*19 0.30 TCGA-AD-6895-01 12 51685446 51685446 T A BIN2 Nonsense_Mutation p.K482* 0.30 TCGA-AD-6895-01 12 51685661 51685661 G A BIN2 Missense_Mutation p.T410I 0.30 deleterious_low_confidence(0.05) possibly_damaging(0.632) TCGA-AD-6895-01 12 52281902 52281902 G A ANKRD33 5'UTR 0.32 TCGA-AD-6895-01 12 52309066 52309066 C T ACVRL1 Missense_Mutation p.T277M 0.26 deleterious(0.04) probably_damaging(1) TCGA-AD-6895-01 12 52913995 52913995 C T KRT5 Missense_Mutation p.R29H 0.21 tolerated(0.18) possibly_damaging(0.522) TCGA-AD-6895-01 12 53002019 53002019 G A KRT73 Silent p.T528T 0.30 TCGA-AD-6895-01 12 53677019 53677019 G A ESPL1 Silent p.V966V 0.25 TCGA-AD-6895-01 12 53681785 53681785 A G ESPL1 Silent p.E1402E 0.29 TCGA-AD-6895-01 12 53687162 53687162 T A ESPL1 Silent p.L2089L 0.22 TCGA-AD-6895-01 12 53722500 53722500 C A SP7 Silent p.G242G 0.26 TCGA-AD-6895-01 12 54396531 54396531 G A HOXC9 3'UTR 0.22 TCGA-AD-6895-01 12 55356787 55356787 G A TESPA1 Missense_Mutation p.R299W 0.34 deleterious(0) probably_damaging(0.949) TCGA-AD-6895-01 12 55688084 55688084 T C OR6C6 Silent p.K311K 0.24 TCGA-AD-6895-01 12 56554337 56554338 TG - MYL6 Intron 0.30 TCGA-AD-6895-01 12 56559137 56559138 - C SMARCC2 Frame_Shift_Ins p.A1035Gfs*42 0.18 TCGA-AD-6895-01 12 56811320 56811320 G T TIMELESS 3'UTR 0.41 TCGA-AD-6895-01 12 57113254 57113254 T - NACA Intron 0.25 TCGA-AD-6895-01 12 57398096 57398096 C T ZBTB39 Silent p.P202P 0.27 TCGA-AD-6895-01 12 57492355 57492355 G A STAT6 Missense_Mutation p.H698Y 0.23 tolerated(0.41) benign(0.163) TCGA-AD-6895-01 12 57921981 57921981 T C MBD6 Missense_Mutation p.S820P 0.30 tolerated_low_confidence(0.49) unknown(0) TCGA-AD-6895-01 12 58007138 58007138 C T ARHGEF25 Missense_Mutation p.T174M 0.34 deleterious(0.03) benign(0.027) TCGA-AD-6895-01 12 58016411 58016411 C T SLC26A10 Silent p.L260L 0.29 TCGA-AD-6895-01 12 6062730 6062730 A C VWF Missense_Mutation p.C2640G 0.08 deleterious(0) possibly_damaging(0.849) TCGA-AD-6895-01 12 6436855 6436856 CT - PLEKHG6 Frame_Shift_Del p.S703Cfs*33 0.43 TCGA-AD-6895-01 12 6456952 6456952 G A SCNN1A 3'UTR 0.50 TCGA-AD-6895-01 12 6664487 6664487 C T IFFO1 Missense_Mutation p.E237K 0.33 deleterious(0.01) probably_damaging(0.946) TCGA-AD-6895-01 12 6966795 6966795 G A USP5 Missense_Mutation p.V258M 0.13 deleterious(0) probably_damaging(0.995) TCGA-AD-6895-01 12 70070790 70070790 A - BEST3 Frame_Shift_Del p.L258Wfs*33 0.24 TCGA-AD-6895-01 12 7045323 7045323 C T ATN1 Missense_Mutation p.T298I 0.22 benign(0.01) TCGA-AD-6895-01 12 7069309 7069309 G A PTPN6 Silent p.S496S 0.20 TCGA-AD-6895-01 12 71946959 71946959 G A LGR5 Missense_Mutation p.V179I 0.30 tolerated(0.16) benign(0.008) TCGA-AD-6895-01 12 7242060 7242060 C T C1R Silent p.T198T 0.19 TCGA-AD-6895-01 12 7356082 7356082 C T PEX5 Missense_Mutation p.R316W 0.34 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 12 82832496 82832496 G A METTL25 Splice_Site p.X469_splice 0.16 TCGA-AD-6895-01 12 863045 863045 C A WNK1 Missense_Mutation p.P105H 0.30 deleterious(0) unknown(0) TCGA-AD-6895-01 12 86373364 86373364 C T MGAT4C Silent p.V380V 0.32 TCGA-AD-6895-01 12 8673825 8673825 A T CLEC4D Missense_Mutation p.E202D 0.14 tolerated(0.06) possibly_damaging(0.699) TCGA-AD-6895-01 12 9087747 9087747 T C PHC1 Missense_Mutation p.S761P 0.26 tolerated(0.33) unknown(0) TCGA-AD-6895-01 12 9089870 9089870 G A PHC1 Missense_Mutation p.R859H 0.23 deleterious(0.02) unknown(0) TCGA-AD-6895-01 12 9162222 9162222 A T KLRG1 3'UTR 0.54 TCGA-AD-6895-01 12 9162241 9162241 A C KLRG1 3'UTR 0.33 TCGA-AD-6895-01 12 98927002 98927002 A G TMPO Missense_Mutation p.K323E 0.21 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AD-6895-01 12 98927085 98927085 A G TMPO Silent p.Q350Q 0.26 TCGA-AD-6895-01 13 102345033 102345033 G A ITGBL1 Missense_Mutation p.D372N 0.24 tolerated(0.38) benign(0.005) TCGA-AD-6895-01 13 107211880 107211880 A T ARGLU1 Missense_Mutation p.L158H 0.27 tolerated(0.06) probably_damaging(0.938) TCGA-AD-6895-01 13 108955874 108955874 G T TNFSF13B Nonsense_Mutation p.E223* 0.31 TCGA-AD-6895-01 13 110829230 110829230 G A COL4A1 Splice_Site p.X957_splice 0.18 TCGA-AD-6895-01 13 111144460 111144460 G A COL4A2 Silent p.L1166L 0.24 TCGA-AD-6895-01 13 111558398 111558398 G A ANKRD10 Missense_Mutation p.A146V 0.46 tolerated(0.53) benign(0.42) TCGA-AD-6895-01 13 111896631 111896631 G A ARHGEF7 Missense_Mutation p.E335K 0.29 deleterious(0.01) benign(0.273) TCGA-AD-6895-01 13 113202005 113202005 C T TUBGCP3 Missense_Mutation p.R366H 0.29 deleterious(0) benign(0.21) TCGA-AD-6895-01 13 113481130 113481130 C T ATP11A Silent p.D382D 0.08 TCGA-AD-6895-01 13 113975895 113975895 G A LAMP1 Missense_Mutation p.G323S 0.27 tolerated(1) benign(0.003) TCGA-AD-6895-01 13 114088093 114088093 C T ADPRHL1 Missense_Mutation p.V157M 0.44 deleterious(0) possibly_damaging(0.61) TCGA-AD-6895-01 13 115091462 115091462 C T CHAMP1 Silent p.C715C 0.30 TCGA-AD-6895-01 13 20638677 20638677 A - ZMYM2 Frame_Shift_Del p.K1044Rfs*33 0.45 TCGA-AD-6895-01 13 20763457 20763457 C T GJB2 Silent p.A88A 0.23 TCGA-AD-6895-01 13 21199961 21199961 A G IFT88 Silent p.T433T 0.37 TCGA-AD-6895-01 13 23894857 23894857 G A SGCG Silent p.A220A 0.22 TCGA-AD-6895-01 13 25670328 25670328 G A PABPC3 5'UTR 0.21 TCGA-AD-6895-01 13 25743872 25743872 G A AMER2 Missense_Mutation p.P629L 0.09 tolerated(0.24) probably_damaging(0.999) TCGA-AD-6895-01 13 26154070 26154070 C T ATP8A2 Silent p.Y664Y 0.12 TCGA-AD-6895-01 13 26621038 26621038 G T SHISA2 Silent p.I167I 0.14 TCGA-AD-6895-01 13 27680066 27680066 A T USP12 Missense_Mutation p.Y49N 0.29 deleterious(0.02) probably_damaging(0.986) TCGA-AD-6895-01 13 28197203 28197203 C T POLR1D Missense_Mutation p.T73I 0.19 deleterious(0.01) possibly_damaging(0.701) TCGA-AD-6895-01 13 32805400 32805400 A G FRY Silent p.L1830L 0.33 TCGA-AD-6895-01 13 33634996 33634996 C T KL Missense_Mutation p.R594C 0.19 deleterious(0) possibly_damaging(0.893) TCGA-AD-6895-01 13 36700058 36700058 C T DCLK1 Missense_Mutation p.V73M 0.22 deleterious(0.03) unknown(0) TCGA-AD-6895-01 13 38160951 38160951 T C POSTN Missense_Mutation p.I241V 0.22 tolerated(0.25) benign(0.004) TCGA-AD-6895-01 13 39432071 39432071 T C FREM2 Silent p.P2372P 0.09 TCGA-AD-6895-01 13 40325341 40325341 T A COG6 3'UTR 0.21 TCGA-AD-6895-01 13 41706397 41706397 C T KBTBD6 Missense_Mutation p.C84Y 0.20 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 13 41797486 41797486 C T MTRF1 Missense_Mutation p.G377E 0.31 deleterious(0.02) probably_damaging(0.987) TCGA-AD-6895-01 13 41834695 41834695 C T MTRF1 Missense_Mutation p.A117T 0.07 tolerated(0.11) benign(0.009) TCGA-AD-6895-01 13 41892982 41892982 A - NAA16 Frame_Shift_Del p.E63Kfs*38 0.21 TCGA-AD-6895-01 13 42874336 42874336 A G AKAP11 Missense_Mutation p.Y485C 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-AD-6895-01 13 43597805 43597805 C T DNAJC15 Missense_Mutation p.R15C 0.36 deleterious_low_confidence(0.04) probably_damaging(0.964) TCGA-AD-6895-01 13 47355694 47355694 A - ESD Frame_Shift_Del p.F146Lfs*11 0.21 TCGA-AD-6895-01 13 50205496 50205496 G A ARL11 3'UTR 0.28 TCGA-AD-6895-01 13 61986210 61986210 G A PCDH20 Silent p.V674V 0.22 TCGA-AD-6895-01 13 61987455 61987455 G A PCDH20 Silent p.D259D 0.36 TCGA-AD-6895-01 13 67800594 67800594 T G PCDH9 Missense_Mutation p.K660T 0.28 tolerated(0.46) probably_damaging(0.992) TCGA-AD-6895-01 13 77632488 77632488 C A MYCBP2 Silent p.G4360G 0.25 TCGA-AD-6895-01 13 77745707 77745707 T - MYCBP2 Frame_Shift_Del p.N1867Tfs*9 0.16 TCGA-AD-6895-01 13 84455803 84455804 - C SLITRK1 5'UTR 0.31 TCGA-AD-6895-01 14 100758797 100758797 G A SLC25A29 Silent p.R245R 0.45 TCGA-AD-6895-01 14 102029130 102029130 C T DIO3 3'UTR 0.22 TCGA-AD-6895-01 14 102029613 102029613 G - DIO3 3'UTR 0.25 TCGA-AD-6895-01 14 103174921 103174921 G A RCOR1 Splice_Site p.X260_splice 0.32 TCGA-AD-6895-01 14 103452887 103452887 G A CDC42BPB Silent p.D209D 0.24 TCGA-AD-6895-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.25 TCGA-AD-6895-01 14 105209439 105209439 G A ADSSL1 Silent p.E371E 0.32 TCGA-AD-6895-01 14 105351847 105351847 C T CEP170B Missense_Mutation p.P638S 0.30 tolerated(0.24) benign(0.022) TCGA-AD-6895-01 14 105615134 105615134 G A JAG2 Silent p.D656D 0.28 TCGA-AD-6895-01 14 105624056 105624056 A T JAG2 Missense_Mutation p.D154E 0.21 tolerated(0.28) benign(0.006) TCGA-AD-6895-01 14 105676918 105676918 G A BRF1 Silent p.G668G 0.09 TCGA-AD-6895-01 14 20216045 20216045 T - OR4Q3 Frame_Shift_Del p.F154Lfs*10 0.08 TCGA-AD-6895-01 14 20897322 20897322 C T KLHL33 Missense_Mutation p.E430K 0.31 tolerated(0.8) benign(0.002) TCGA-AD-6895-01 14 20897463 20897463 A T KLHL33 Missense_Mutation p.Y383N 0.21 deleterious(0) possibly_damaging(0.659) TCGA-AD-6895-01 14 21424242 21424242 G T RNASE2 Missense_Mutation p.Q104H 0.31 tolerated(0.09) possibly_damaging(0.84) TCGA-AD-6895-01 14 21702375 21702376 CA - HNRNPC 5'UTR 0.26 TCGA-AD-6895-01 14 21790087 21790087 T A RPGRIP1 Silent p.T562T 0.23 TCGA-AD-6895-01 14 21871807 21871808 - T CHD8 Frame_Shift_Ins p.I1108Nfs*7 0.19 TCGA-AD-6895-01 14 21961037 21961037 G A TOX4 Missense_Mutation p.R421Q 0.27 tolerated(0.15) benign(0.13) TCGA-AD-6895-01 14 23512007 23512007 C T PSMB11 Silent p.G191G 0.22 TCGA-AD-6895-01 14 23844900 23844900 C T IL25 Silent p.C115C 0.22 TCGA-AD-6895-01 14 23859484 23859484 C T MYH6 Missense_Mutation p.E1172K 0.12 tolerated(0.1) probably_damaging(0.999) TCGA-AD-6895-01 14 23883033 23883033 G A MYH7 Missense_Mutation p.R1909W 0.33 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 14 24040238 24040238 C T JPH4 Missense_Mutation p.A568T 0.37 tolerated(0.38) benign(0) TCGA-AD-6895-01 14 24436660 24436660 A C DHRS4 Intron 0.16 TCGA-AD-6895-01 14 24573144 24573144 G A PCK2 Missense_Mutation p.A632T 0.10 tolerated(0.17) possibly_damaging(0.87) TCGA-AD-6895-01 14 24590658 24590658 G A DCAF11 Missense_Mutation p.R444Q 0.42 deleterious(0.03) possibly_damaging(0.801) TCGA-AD-6895-01 14 24838823 24838823 G A NFATC4 Silent p.S136S 0.29 TCGA-AD-6895-01 14 24885194 24885194 C T NYNRIN Silent p.Y1413Y 0.21 TCGA-AD-6895-01 14 24902239 24902239 G A KHNYN Splice_Site p.X526_splice 0.08 TCGA-AD-6895-01 14 29236600 29236600 C T FOXG1 Missense_Mutation p.H39Y 0.22 tolerated_low_confidence(0.1) unknown(0) TCGA-AD-6895-01 14 29237904 29237904 T G FOXG1 Missense_Mutation p.D473E 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.739) TCGA-AD-6895-01 14 36339748 36339748 A - BRMS1L 3'UTR 0.13 TCGA-AD-6895-01 14 36946271 36946271 A G SFTA3 Missense_Mutation p.C56R 0.08 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-AD-6895-01 14 37050618 37050618 G A NKX2-8 Missense_Mutation p.P70L 0.29 tolerated(0.14) benign(0) TCGA-AD-6895-01 14 37050622 37050622 G A NKX2-8 Missense_Mutation p.R69W 0.29 deleterious(0.01) possibly_damaging(0.483) TCGA-AD-6895-01 14 37050638 37050638 C T NKX2-8 Silent p.P63P 0.28 TCGA-AD-6895-01 14 42373536 42373536 G A LRFN5 3'UTR 0.46 TCGA-AD-6895-01 14 45373605 45373605 G T C14orf28 Missense_Mutation p.G208C 0.30 tolerated_low_confidence(0.07) benign(0.001) TCGA-AD-6895-01 14 45644555 45644556 - A FANCM Frame_Shift_Ins p.E869Rfs*3 0.17 TCGA-AD-6895-01 14 45673612 45673612 T C MIS18BP1 Silent p.P1095P 0.27 TCGA-AD-6895-01 14 50101684 50101684 C T DNAAF2 Missense_Mutation p.E62K 0.26 deleterious(0) probably_damaging(0.996) TCGA-AD-6895-01 14 50266214 50266214 T A NEMF Missense_Mutation p.H815L 0.22 tolerated(0.2) probably_damaging(0.954) TCGA-AD-6895-01 14 50266221 50266221 G A NEMF Missense_Mutation p.R813W 0.20 deleterious(0.02) probably_damaging(0.968) TCGA-AD-6895-01 14 50295406 50295406 T C NEMF Missense_Mutation p.Q451R 0.23 tolerated(0.19) benign(0.023) TCGA-AD-6895-01 14 51410903 51410903 C T PYGL Silent p.Q73Q 0.24 TCGA-AD-6895-01 14 55529735 55529735 G C MAPK1IP1L Missense_Mutation p.G140R 0.23 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-AD-6895-01 14 56078836 56078836 T A KTN1 Missense_Mutation p.F24I 0.28 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 14 56078837 56078837 T A KTN1 Missense_Mutation p.F24Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 14 57937993 57937993 A G C14orf105 3'UTR 0.27 TCGA-AD-6895-01 14 58030830 58030830 G A SLC35F4 3'UTR 0.20 TCGA-AD-6895-01 14 59931490 59931490 G A GPR135 Missense_Mutation p.T152M 0.33 tolerated(0.11) probably_damaging(0.948) TCGA-AD-6895-01 14 60193652 60193652 G T RTN1 Missense_Mutation p.L584I 0.23 deleterious(0.02) benign(0.142) TCGA-AD-6895-01 14 60193674 60193674 G A RTN1 Silent p.G576G 0.29 TCGA-AD-6895-01 14 61190336 61190336 C G SIX4 Missense_Mutation p.A153P 0.25 deleterious(0) probably_damaging(0.994) TCGA-AD-6895-01 14 63316466 63316466 G A KCNH5 Silent p.L492L 0.29 TCGA-AD-6895-01 14 64006394 64006394 C T PPP2R5E Missense_Mutation p.A4T 0.30 tolerated_low_confidence(0.46) benign(0.001) TCGA-AD-6895-01 14 64735576 64735576 G A ESR2 Missense_Mutation p.R197W 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 14 64855044 64855044 C G MTHFD1 5'Flank 0.26 TCGA-AD-6895-01 14 64906864 64906864 G T MTHFD1 Silent p.V565V 0.26 TCGA-AD-6895-01 14 64954147 64954147 C T ZBTB25 Missense_Mutation p.G268S 0.30 tolerated(0.26) probably_damaging(0.999) TCGA-AD-6895-01 14 65220354 65220354 G A SPTB Missense_Mutation p.T2168M 0.39 deleterious(0.01) probably_damaging(0.92) TCGA-AD-6895-01 14 65544753 65544753 G A MAX Missense_Mutation p.A58V 0.33 tolerated(0.11) possibly_damaging(0.759) TCGA-AD-6895-01 14 69256173 69256173 G A ZFP36L1 3'UTR 0.35 TCGA-AD-6895-01 14 71413696 71413696 T C PCNX Missense_Mutation p.V73A 0.31 tolerated(0.37) benign(0.002) TCGA-AD-6895-01 14 73459950 73459950 G A ZFYVE1 Silent p.P368P 0.26 TCGA-AD-6895-01 14 73459955 73459955 G A ZFYVE1 Missense_Mutation p.P367S 0.26 tolerated(0.2) benign(0.041) TCGA-AD-6895-01 14 73731402 73731402 C T PAPLN Silent p.A1004A 0.24 TCGA-AD-6895-01 14 73959163 73959163 T C HEATR4 Intron 0.12 TCGA-AD-6895-01 14 74706343 74706343 G A VSX2 Missense_Mutation p.A27T 0.35 tolerated(0.46) benign(0.001) TCGA-AD-6895-01 14 76662232 76662232 T C GPATCH2L Missense_Mutation p.V402A 0.19 tolerated(0.08) benign(0.002) TCGA-AD-6895-01 14 77580598 77580598 A T CIPC Missense_Mutation p.L379F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6895-01 14 78197429 78197430 - T SNW1 Frame_Shift_Ins p.M312Nfs*10 0.10 TCGA-AD-6895-01 14 89061445 89061445 C T ZC3H14 Intron 0.44 TCGA-AD-6895-01 14 89131804 89131804 C T EML5 Missense_Mutation p.G1052S 0.31 deleterious(0.01) probably_damaging(1) TCGA-AD-6895-01 14 90738888 90738888 C T PSMC1 3'UTR 0.20 TCGA-AD-6895-01 14 91701093 91701095 AGG - GPR68 In_Frame_Del p.L101del 0.41 TCGA-AD-6895-01 14 91755652 91755652 T A CCDC88C Missense_Mutation p.K1413I 0.19 deleterious(0) probably_damaging(0.98) TCGA-AD-6895-01 14 92088258 92088258 T C CATSPERB Missense_Mutation p.T652A 0.29 tolerated(0.08) benign(0.085) TCGA-AD-6895-01 14 94079286 94079286 A G UNC79 Missense_Mutation p.S1123G 0.13 tolerated(0.43) benign(0.024) TCGA-AD-6895-01 14 94929581 94929581 G A SERPINA9 Missense_Mutation p.A386V 0.07 deleterious(0.04) possibly_damaging(0.495) TCGA-AD-6895-01 14 94962814 94962815 - T SERPINA12 Frame_Shift_Ins p.N267Kfs*10 0.13 TCGA-AD-6895-01 15 101605651 101605651 G A LRRK1 Missense_Mutation p.C1670Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 15 22954216 22954216 G A CYFIP1 Missense_Mutation p.A456T 0.11 tolerated(0.12) benign(0.409) TCGA-AD-6895-01 15 25223575 25223575 G A SNRPN Missense_Mutation p.R236H 0.30 tolerated_low_confidence(0.74) unknown(0) TCGA-AD-6895-01 15 27017849 27017849 G A GABRB3 Missense_Mutation p.R51C 0.33 deleterious(0) probably_damaging(0.956) TCGA-AD-6895-01 15 27185143 27185143 C A GABRA5 Missense_Mutation p.L266I 0.11 tolerated(1) possibly_damaging(0.669) TCGA-AD-6895-01 15 28202840 28202840 G A OCA2 Missense_Mutation p.R560C 0.24 deleterious(0) probably_damaging(0.982) TCGA-AD-6895-01 15 29390721 29390721 C T APBA2 Missense_Mutation p.T427M 0.27 deleterious(0) probably_damaging(0.982) TCGA-AD-6895-01 15 29393816 29393816 C T APBA2 Silent p.D451D 0.34 TCGA-AD-6895-01 15 29393819 29393819 C T APBA2 Silent p.H452H 0.36 TCGA-AD-6895-01 15 30018641 30018641 G A TJP1 Missense_Mutation p.A785V 0.17 deleterious(0.02) possibly_damaging(0.896) TCGA-AD-6895-01 15 31329988 31329989 - T TRPM1 Frame_Shift_Ins p.Q850Tfs*12 0.21 TCGA-AD-6895-01 15 40308809 40308809 A C EIF2AK4 Missense_Mutation p.K1289T 0.34 deleterious(0) possibly_damaging(0.609) TCGA-AD-6895-01 15 41229111 41229111 G A DLL4 Silent p.A642A 0.22 TCGA-AD-6895-01 15 41828339 41828339 C T RPAP1 Silent p.S136S 0.42 TCGA-AD-6895-01 15 41989040 41989040 C A MGA Missense_Mutation p.P611H 0.26 tolerated(0.08) benign(0.013) TCGA-AD-6895-01 15 42168817 42168817 C A SPTBN5 Missense_Mutation p.A1294S 0.27 benign(0.228) TCGA-AD-6895-01 15 42614213 42614213 C T GANC Missense_Mutation p.R430C 0.27 probably_damaging(1) TCGA-AD-6895-01 15 43771645 43771645 C A TP53BP1 Missense_Mutation p.Q246H 0.23 tolerated(0.09) benign(0.006) TCGA-AD-6895-01 15 43814552 43814552 C T MAP1A Missense_Mutation p.A294V 0.25 benign(0.021) TCGA-AD-6895-01 15 45394032 45394032 A T DUOX2 Missense_Mutation p.F937Y 0.30 tolerated(0.43) benign(0.032) TCGA-AD-6895-01 15 45402898 45402898 A G DUOX2 Missense_Mutation p.V298A 0.26 deleterious(0.01) benign(0.078) TCGA-AD-6895-01 15 45409786 45409786 C T DUOXA1 Missense_Mutation p.R460H 0.40 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-AD-6895-01 15 45694604 45694604 G A SPATA5L1 5'UTR 0.21 TCGA-AD-6895-01 15 48525014 48525014 A G SLC12A1 Missense_Mutation p.R356G 0.21 deleterious(0.01) benign(0.166) TCGA-AD-6895-01 15 48634444 48634444 A - DUT 3'UTR 0.62 TCGA-AD-6895-01 15 48791234 48791234 C T FBN1 Silent p.A705A 0.28 TCGA-AD-6895-01 15 49048461 49048461 G A CEP152 Missense_Mutation p.A995V 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-AD-6895-01 15 49073395 49073395 G T CEP152 Silent p.T525T 0.26 TCGA-AD-6895-01 15 50546375 50546375 A T HDC Silent p.L224L 0.48 TCGA-AD-6895-01 15 52245364 52245364 T C LEO1 Silent p.L479L 0.31 TCGA-AD-6895-01 15 52258353 52258353 T C LEO1 Missense_Mutation p.E136G 0.31 tolerated_low_confidence(0.14) benign(0.002) TCGA-AD-6895-01 15 52258354 52258354 C A LEO1 Nonsense_Mutation p.E136* 0.30 TCGA-AD-6895-01 15 52356636 52356636 T A MAPK6 Silent p.I535I 0.05 TCGA-AD-6895-01 15 53049699 53049700 - T ONECUT1 3'UTR 0.24 TCGA-AD-6895-01 15 53081248 53081248 C T ONECUT1 Silent p.A278A 0.12 TCGA-AD-6895-01 15 53081670 53081670 G A ONECUT1 Missense_Mutation p.H138Y 0.27 tolerated(0.09) possibly_damaging(0.783) TCGA-AD-6895-01 15 53889439 53889439 C T WDR72 Silent p.A995A 0.24 TCGA-AD-6895-01 15 54306141 54306141 T - UNC13C Frame_Shift_Del p.S349Qfs*15 0.15 TCGA-AD-6895-01 15 60760471 60760471 G A NARG2 Missense_Mutation p.P66L 0.30 deleterious(0.02) benign(0.039) TCGA-AD-6895-01 15 62147137 62147137 T G VPS13C Missense_Mutation p.H3698P 0.23 deleterious(0) benign(0.071) TCGA-AD-6895-01 15 63918255 63918255 G A HERC1 Missense_Mutation p.R4402W 0.32 probably_damaging(0.997) TCGA-AD-6895-01 15 64966241 64966241 T C ZNF609 Silent p.S396S 0.28 TCGA-AD-6895-01 15 65295555 65295555 A T MTFMT Missense_Mutation p.S339T 0.24 tolerated(0.32) benign(0) TCGA-AD-6895-01 15 65491074 65491074 A G CILP Missense_Mutation p.V517A 0.23 deleterious(0.04) benign(0.257) TCGA-AD-6895-01 15 65808157 65808157 A T DPP8 5'UTR 0.44 TCGA-AD-6895-01 15 65917766 65917766 C T SLC24A1 Missense_Mutation p.R450W 0.28 possibly_damaging(0.876) TCGA-AD-6895-01 15 66995566 66995566 C - SMAD6 5'UTR 0.27 TCGA-AD-6895-01 15 69003153 69003153 G A CORO2B Missense_Mutation p.R139H 0.18 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 15 69560841 69560841 A G GLCE Missense_Mutation p.K371R 0.23 tolerated(0.25) benign(0.093) TCGA-AD-6895-01 15 71507393 71507393 C T THSD4 Missense_Mutation p.A40V 0.50 tolerated(0.27) benign(0.001) TCGA-AD-6895-01 15 73409052 73409052 G A NEO1 Missense_Mutation p.R101H 0.22 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 15 73660551 73660551 C - HCN4 Frame_Shift_Del p.A21Pfs*211 0.26 TCGA-AD-6895-01 15 74425553 74425553 G A ISLR2 Missense_Mutation p.R153H 0.19 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 15 75135362 75135362 A T ULK3 Missense_Mutation p.Y29N 0.32 deleterious(0) possibly_damaging(0.809) TCGA-AD-6895-01 15 75501141 75501141 C T C15orf39 Missense_Mutation p.R918C 0.22 deleterious(0) probably_damaging(0.981) TCGA-AD-6895-01 15 75586775 75586775 C A GOLGA6D Missense_Mutation p.Q681K 0.30 deleterious(0.01) possibly_damaging(0.491) TCGA-AD-6895-01 15 75654730 75654730 G A MAN2C1 Missense_Mutation p.A321V 0.22 tolerated(1) benign(0.03) TCGA-AD-6895-01 15 75656960 75656960 C T MAN2C1 Missense_Mutation p.G157R 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-AD-6895-01 15 76630126 76630126 C T ISL2 Silent p.P22P 0.29 TCGA-AD-6895-01 15 78316666 78316666 G A TBC1D2B Silent p.G434G 0.33 TCGA-AD-6895-01 15 78403505 78403505 A G CIB2 Splice_Site p.X66_splice 0.21 TCGA-AD-6895-01 15 78463790 78463791 - T ACSBG1 Frame_Shift_Ins p.M724Nfs*59 0.21 TCGA-AD-6895-01 15 78837982 78837982 G A PSMA4 Missense_Mutation p.R128H 0.23 deleterious(0) possibly_damaging(0.762) TCGA-AD-6895-01 15 81582825 81582825 C T IL16 Missense_Mutation p.A455V 0.26 tolerated(0.08) benign(0.013) TCGA-AD-6895-01 15 82335546 82335546 C T MEX3B Silent p.P555P 0.28 TCGA-AD-6895-01 15 82336129 82336129 G T MEX3B Missense_Mutation p.P361H 0.27 tolerated(0.06) unknown(0) TCGA-AD-6895-01 15 82336174 82336174 C - MEX3B Frame_Shift_Del p.G346Efs*181 0.24 TCGA-AD-6895-01 15 83933056 83933056 T C BNC1 Missense_Mutation p.D316G 0.27 tolerated(0.07) possibly_damaging(0.838) TCGA-AD-6895-01 15 83935704 83935704 G A BNC1 Missense_Mutation p.R107C 0.30 deleterious(0) possibly_damaging(0.81) TCGA-AD-6895-01 15 89444812 89444812 C T MFGE8 Silent p.A280A 0.21 TCGA-AD-6895-01 15 90904478 90904478 C T ZNF774 Missense_Mutation p.A472V 0.20 tolerated(0.07) possibly_damaging(0.883) TCGA-AD-6895-01 15 91312368 91312368 T A BLM Nonsense_Mutation p.C771* 0.19 TCGA-AD-6895-01 15 91769710 91769710 A T SV2B Missense_Mutation p.S73C 0.32 deleterious(0.04) benign(0.264) TCGA-AD-6895-01 15 92690230 92690230 C T SLCO3A1 Missense_Mutation p.A510V 0.21 deleterious(0.03) benign(0.006) TCGA-AD-6895-01 15 92706163 92706163 C T SLCO3A1 Missense_Mutation p.T644M 0.08 tolerated(0.11) probably_damaging(0.937) TCGA-AD-6895-01 15 93524659 93524659 C G CHD2 Missense_Mutation p.A1013G 0.18 tolerated(0.23) benign(0.017) TCGA-AD-6895-01 15 99482565 99482565 G A IGF1R Missense_Mutation p.E1145K 0.20 deleterious(0) probably_damaging(0.984) TCGA-AD-6895-01 15 99673044 99673044 G A SYNM Silent p.A1492A 0.23 TCGA-AD-6895-01 16 10626897 10626897 A G EMP2 Silent p.I123I 0.27 TCGA-AD-6895-01 16 10641447 10641447 C T EMP2 Missense_Mutation p.A10T 0.20 tolerated(0.08) benign(0.196) TCGA-AD-6895-01 16 11348891 11348891 C T SOCS1 Missense_Mutation p.E149K 0.22 tolerated(1) benign(0.002) TCGA-AD-6895-01 16 11444634 11444634 G T RMI2 Missense_Mutation p.R144M 0.24 deleterious(0) possibly_damaging(0.883) TCGA-AD-6895-01 16 11770804 11770805 - C SNN 3'UTR 0.21 TCGA-AD-6895-01 16 1251870 1251870 C T CACNA1H Missense_Mutation p.R474C 0.33 deleterious(0) probably_damaging(0.994) TCGA-AD-6895-01 16 1257796 1257796 C T CACNA1H Silent p.D1030D 0.34 TCGA-AD-6895-01 16 12875065 12875065 C T CPPED1 Missense_Mutation p.G89D 0.38 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 16 1396026 1396026 C T BAIAP3 Missense_Mutation p.R785W 0.36 deleterious(0) possibly_damaging(0.677) TCGA-AD-6895-01 16 15225420 15225420 A G RP11-1186N24.5 RNA 0.30 TCGA-AD-6895-01 16 15692828 15692828 C T KIAA0430 Missense_Mutation p.D1623N 0.42 deleterious(0.01) possibly_damaging(0.671) TCGA-AD-6895-01 16 15730178 15730178 T A KIAA0430 Nonsense_Mutation p.K56* 0.30 TCGA-AD-6895-01 16 16173263 16173263 C T ABCC1 Silent p.G681G 0.09 TCGA-AD-6895-01 16 1877635 1877635 G A FAHD1 Silent p.V135V 0.30 TCGA-AD-6895-01 16 19085311 19085311 G A COQ7 Silent p.R107R 0.13 TCGA-AD-6895-01 16 19130505 19130505 G A ITPRIPL2 3'UTR 0.32 TCGA-AD-6895-01 16 19130810 19130810 T A ITPRIPL2 3'UTR 0.32 TCGA-AD-6895-01 16 19131835 19131835 T A ITPRIPL2 3'UTR 0.27 TCGA-AD-6895-01 16 19191785 19191785 G A SYT17 Silent p.R85R 0.22 TCGA-AD-6895-01 16 19659166 19659166 T C C16orf62 Missense_Mutation p.F753L 0.26 deleterious(0.03) possibly_damaging(0.509) TCGA-AD-6895-01 16 2042125 2042125 G A SYNGR3 Missense_Mutation p.A84T 0.19 deleterious(0.02) benign(0.42) TCGA-AD-6895-01 16 20808061 20808061 T C ERI2 3'UTR 0.15 TCGA-AD-6895-01 16 21213512 21213512 G A ZP2 Silent p.N400N 0.25 TCGA-AD-6895-01 16 2153667 2153667 G A PKD1 Silent p.G2797G 0.27 TCGA-AD-6895-01 16 2153673 2153673 G A PKD1 Silent p.C2795C 0.27 TCGA-AD-6895-01 16 2161760 2161760 G A PKD1 Silent p.G1136G 0.45 TCGA-AD-6895-01 16 21716557 21716557 C T OTOA Missense_Mutation p.L350F 0.26 tolerated(0.06) probably_damaging(1) TCGA-AD-6895-01 16 21809084 21809085 - A RP11-645C24.5 5'Flank 0.20 TCGA-AD-6895-01 16 2279661 2279661 G A E4F1 Missense_Mutation p.A134T 0.32 tolerated(0.49) benign(0.013) TCGA-AD-6895-01 16 2285268 2285268 G A E4F1 Missense_Mutation p.A684T 0.29 tolerated(0.09) benign(0.005) TCGA-AD-6895-01 16 23366809 23366809 C T SCNN1B Missense_Mutation p.R259W 0.14 deleterious(0) probably_damaging(0.979) TCGA-AD-6895-01 16 23703532 23703532 G C ERN2 Missense_Mutation p.L789V 0.23 deleterious(0) possibly_damaging(0.877) TCGA-AD-6895-01 16 2607848 2607848 G A PDPK1 Missense_Mutation p.E57K 0.20 tolerated_low_confidence(0.6) benign(0.015) TCGA-AD-6895-01 16 27455971 27455971 C T IL21R Missense_Mutation p.P206S 0.38 deleterious(0.01) possibly_damaging(0.869) TCGA-AD-6895-01 16 27692719 27692719 G T KIAA0556 Splice_Site p.X270_splice 0.30 TCGA-AD-6895-01 16 2849408 2849408 G A SNORA3 5'Flank 0.30 TCGA-AD-6895-01 16 2867447 2867447 G A PRSS21 Silent p.A27A 0.19 TCGA-AD-6895-01 16 28912098 28912098 C T ATP2A1 Missense_Mutation p.T654M 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 16 28943739 28943739 G T CD19 Missense_Mutation p.R54L 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-AD-6895-01 16 29675468 29675468 C T SPN Missense_Mutation p.P140L 0.23 tolerated(1) benign(0) TCGA-AD-6895-01 16 30041821 30041821 C - FAM57B Frame_Shift_Del p.V10Wfs*112 0.35 TCGA-AD-6895-01 16 30369652 30369652 C G TBC1D10B Silent p.P680P 0.16 TCGA-AD-6895-01 16 30536152 30536152 G C ZNF768 Missense_Mutation p.R437G 0.30 tolerated_low_confidence(0.15) possibly_damaging(0.857) TCGA-AD-6895-01 16 30616237 30616237 G A ZNF689 Missense_Mutation p.T284M 0.35 deleterious(0) probably_damaging(0.983) TCGA-AD-6895-01 16 30795503 30795503 G A ZNF629 Missense_Mutation p.P49L 0.21 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-AD-6895-01 16 30846381 30846381 A T BCL7C Missense_Mutation p.L206H 0.25 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-AD-6895-01 16 30983020 30983020 C T SETD1A Missense_Mutation p.A1113V 0.13 unknown(0) TCGA-AD-6895-01 16 31094852 31094852 A T PRSS53 3'UTR 0.21 TCGA-AD-6895-01 16 31152831 31152831 C T PRSS36 Silent p.L620L 0.23 TCGA-AD-6895-01 16 31196420 31196420 C T FUS Silent p.G228G 0.30 TCGA-AD-6895-01 16 3168963 3168963 C T ZNF205 Missense_Mutation p.S181L 0.25 tolerated(0.19) benign(0.021) TCGA-AD-6895-01 16 3170224 3170224 G A ZNF205 Silent p.R521R 0.15 TCGA-AD-6895-01 16 396165 396165 G A AXIN1 Silent p.S287S 0.28 TCGA-AD-6895-01 16 4390345 4390346 TC - CORO7-PAM16 Frame_Shift_Del p.E1041Kfs*? 0.27 TCGA-AD-6895-01 16 47117582 47117582 C T NETO2 Silent p.K376K 0.22 TCGA-AD-6895-01 16 4935720 4935720 C T PPL Missense_Mutation p.R979H 0.15 tolerated(0.46) benign(0.005) TCGA-AD-6895-01 16 50354205 50354205 C T BRD7 Silent p.P571P 0.28 TCGA-AD-6895-01 16 51174898 51174899 - T SALL1 Frame_Shift_Ins p.T412Nfs*26 0.18 TCGA-AD-6895-01 16 52478207 52478207 C T TOX3 Missense_Mutation p.R323K 0.30 tolerated(0.09) probably_damaging(0.987) TCGA-AD-6895-01 16 53243678 53243679 - A CHD9 Frame_Shift_Ins p.T582Nfs*6 0.14 TCGA-AD-6895-01 16 55519246 55519246 G A MMP2 Missense_Mutation p.G189R 0.15 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 16 57012086 57012086 C T CETP Silent p.V355V 0.27 TCGA-AD-6895-01 16 57265193 57265193 C T RSPRY1 Silent p.Y497Y 0.32 TCGA-AD-6895-01 16 57449014 57449014 G A CCL17 Missense_Mutation p.R31Q 0.27 tolerated(0.13) benign(0.391) TCGA-AD-6895-01 16 58325032 58325032 C T PRSS54 Missense_Mutation p.V32I 0.42 tolerated(1) benign(0) TCGA-AD-6895-01 16 633118 633118 C T PIGQ Silent p.R589R 0.27 TCGA-AD-6895-01 16 65038783 65038783 G A CDH11 5'UTR 0.23 TCGA-AD-6895-01 16 67196754 67196754 C T FBXL8 Silent p.C52C 0.22 TCGA-AD-6895-01 16 67472493 67472493 T A ATP6V0D1 Missense_Mutation p.I332F 0.38 deleterious(0) probably_damaging(0.994) TCGA-AD-6895-01 16 67861863 67861863 T C TSNAXIP1 Silent p.R648R 0.37 TCGA-AD-6895-01 16 68026995 68026996 - G DPEP2 Frame_Shift_Ins p.R41Qfs*26 0.23 TCGA-AD-6895-01 16 68057486 68057486 C T DDX28 5'UTR 0.28 TCGA-AD-6895-01 16 68308628 68308628 T C SLC7A6 5'UTR 0.19 TCGA-AD-6895-01 16 68395643 68395643 C T SMPD3 Missense_Mutation p.G577S 0.31 tolerated(0.42) probably_damaging(0.968) TCGA-AD-6895-01 16 69333589 69333589 A G SNTB2 Missense_Mutation p.Y481C 0.25 deleterious(0.03) possibly_damaging(0.628) TCGA-AD-6895-01 16 70694012 70694012 G A IL34 Silent p.P217P 0.34 TCGA-AD-6895-01 16 71418266 71418266 C T CALB2 Silent p.F186F 0.22 TCGA-AD-6895-01 16 71683548 71683548 T C PHLPP2 Missense_Mutation p.S1073G 0.16 tolerated(0.05) possibly_damaging(0.744) TCGA-AD-6895-01 16 71884658 71884658 C T ATXN1L Missense_Mutation p.R339W 0.14 deleterious(0) possibly_damaging(0.482) TCGA-AD-6895-01 16 71955352 71955352 T A IST1 Missense_Mutation p.V196D 0.14 deleterious(0) benign(0.137) TCGA-AD-6895-01 16 731505 731507 GAA - STUB1 In_Frame_Del p.K145del 0.26 TCGA-AD-6895-01 16 739418 739418 G A WDR24 Silent p.L75L 0.27 TCGA-AD-6895-01 16 745598 745598 G C FBXL16 Missense_Mutation p.P320R 0.12 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 16 75203656 75203656 A T ZFP1 Silent p.V216V 0.33 TCGA-AD-6895-01 16 75263595 75263595 G A BCAR1 Silent p.R855R 0.25 TCGA-AD-6895-01 16 75512637 75512637 C T CHST6 Missense_Mutation p.E364K 0.14 tolerated(0.05) benign(0.142) TCGA-AD-6895-01 16 75565511 75565511 C T CHST5 5'UTR 0.23 TCGA-AD-6895-01 16 76482784 76482784 T A CNTNAP4 Missense_Mutation p.V263E 0.33 deleterious(0) probably_damaging(0.982) TCGA-AD-6895-01 16 79633573 79633573 G A MAF Missense_Mutation p.P76L 0.30 deleterious(0) unknown(0) TCGA-AD-6895-01 16 79634380 79634381 - T MAF 5'UTR 0.28 TCGA-AD-6895-01 16 82660677 82660677 G A CDH13 Silent p.P5P 0.39 TCGA-AD-6895-01 16 83983102 83983102 C T OSGIN1 5'UTR 0.16 TCGA-AD-6895-01 16 84050789 84050789 A C SLC38A8 Silent p.A303A 0.26 TCGA-AD-6895-01 16 84213447 84213447 G A TAF1C Silent p.A570A 0.18 TCGA-AD-6895-01 16 84488451 84488451 G A ATP2C2 Missense_Mutation p.A670T 0.33 deleterious(0) possibly_damaging(0.7) TCGA-AD-6895-01 16 85682273 85682273 C T GSE1 Silent p.G114G 0.41 TCGA-AD-6895-01 16 85952338 85952338 G A IRF8 Missense_Mutation p.C306Y 0.27 tolerated(1) benign(0.116) TCGA-AD-6895-01 16 87445462 87445462 G A ZCCHC14 Silent p.S818S 0.32 TCGA-AD-6895-01 16 87446041 87446041 C T ZCCHC14 Silent p.T625T 0.33 TCGA-AD-6895-01 16 88500012 88500012 C T ZNF469 Missense_Mutation p.A2017V 0.14 benign(0.078) TCGA-AD-6895-01 16 88501836 88501836 C T ZNF469 Missense_Mutation p.A2625V 0.14 benign(0.002) TCGA-AD-6895-01 16 88502504 88502504 C T ZNF469 Missense_Mutation p.H2848Y 0.34 benign(0) TCGA-AD-6895-01 16 8866766 8866766 G A ABAT Missense_Mutation p.A316T 0.15 tolerated(0.43) benign(0.002) TCGA-AD-6895-01 16 88788287 88788287 A T PIEZO1 Missense_Mutation p.F1715I 0.22 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 16 88874666 88874666 C T CDT1 Missense_Mutation p.R541C 0.31 deleterious(0.02) possibly_damaging(0.719) TCGA-AD-6895-01 16 89623599 89623599 C T SPG7 3'UTR 0.38 TCGA-AD-6895-01 16 90109717 90109717 C T GAS8 Silent p.G467G 0.25 TCGA-AD-6895-01 16 9186021 9186021 C T C16orf72 Silent p.P40P 0.33 TCGA-AD-6895-01 17 11696947 11696947 A G DNAH9 Missense_Mutation p.K2730R 0.32 benign(0.008) TCGA-AD-6895-01 17 14095457 14095457 G C COX10 Missense_Mutation p.A283P 0.24 tolerated(0.06) probably_damaging(0.945) TCGA-AD-6895-01 17 15878711 15878711 A T ADORA2B 3'UTR 0.28 TCGA-AD-6895-01 17 16692548 16692548 A T CCDC144A Intron 0.14 TCGA-AD-6895-01 17 1684431 1684431 T C SMYD4 3'UTR 0.21 TCGA-AD-6895-01 17 17062146 17062146 G A MPRIP Missense_Mutation p.D626N 0.26 deleterious(0.03) benign(0.181) TCGA-AD-6895-01 17 17183983 17183983 C T COPS3 Intron 0.15 TCGA-AD-6895-01 17 17698508 17698508 A - RAI1 Frame_Shift_Del p.N750Tfs*69 0.32 TCGA-AD-6895-01 17 17699399 17699399 G - RAI1 Frame_Shift_Del p.A1048Pfs*16 0.28 TCGA-AD-6895-01 17 1782566 1782566 A - RPA1 Frame_Shift_Del p.N274Mfs*5 0.13 TCGA-AD-6895-01 17 18023602 18023602 C T MYO15A Silent p.P496P 0.24 TCGA-AD-6895-01 17 18111693 18111693 A G ALKBH5 Missense_Mutation p.K390E 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AD-6895-01 17 18219788 18219788 G A SMCR8 Missense_Mutation p.A229T 0.26 tolerated(0.13) possibly_damaging(0.739) TCGA-AD-6895-01 17 18659418 18659418 G A FBXW10 Missense_Mutation p.E395K 0.21 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 17 19699446 19699446 C T ULK2 Silent p.R653R 0.24 TCGA-AD-6895-01 17 20109123 20109123 C T SPECC1 Silent p.A587A 0.17 TCGA-AD-6895-01 17 20224581 20224581 G A AC004702.2 Intron 0.19 TCGA-AD-6895-01 17 2264966 2264966 C T SGSM2 Missense_Mutation p.R57C 0.28 deleterious(0) probably_damaging(0.969) TCGA-AD-6895-01 17 2598735 2598735 C T CLUH Missense_Mutation p.R787H 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 26874270 26874270 C T UNC119 3'UTR 0.32 TCGA-AD-6895-01 17 27493283 27493283 G A MYO18A Missense_Mutation p.R226W 0.29 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 29283361 29283361 G A ADAP2 Missense_Mutation p.G329R 0.26 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 17 29283471 29283471 G A ADAP2 Silent p.T365T 0.17 TCGA-AD-6895-01 17 2930248 2930248 C T RAP1GAP2 Missense_Mutation p.P664L 0.31 tolerated(0.11) benign(0.009) TCGA-AD-6895-01 17 30529898 30529900 TCT - RHOT1 In_Frame_Del p.L439del 0.27 TCGA-AD-6895-01 17 3343429 3343429 T - SPATA22 3'UTR 0.17 TCGA-AD-6895-01 17 33460468 33460468 A C NLE1 Missense_Mutation p.W422G 0.32 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 17 3417235 3417235 C A TRPV3 Missense_Mutation p.E784D 0.11 tolerated_low_confidence(0.91) benign(0.001) TCGA-AD-6895-01 17 35548086 35548086 G T ACACA Missense_Mutation p.P1516H 0.33 deleterious(0.04) probably_damaging(1) TCGA-AD-6895-01 17 35742958 35742958 G T C17orf78 Missense_Mutation p.G135W 0.24 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 36493023 36493023 C G GPR179 Missense_Mutation p.Q355H 0.29 deleterious(0.01) benign(0.139) TCGA-AD-6895-01 17 36646734 36646734 C T ARHGAP23 Missense_Mutation p.T1031M 0.08 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 36881863 36881863 C T MLLT6 3'UTR 0.33 TCGA-AD-6895-01 17 37687679 37687679 G A CDK12 3'UTR 0.27 TCGA-AD-6895-01 17 37829796 37829796 C T PGAP3 Missense_Mutation p.G222D 0.21 deleterious(0) probably_damaging(0.973) TCGA-AD-6895-01 17 3787185 3787185 C T CAMKK1 Missense_Mutation p.R152K 0.25 tolerated(0.98) benign(0.009) TCGA-AD-6895-01 17 3802294 3802294 G A P2RX1 Silent p.N300N 0.13 TCGA-AD-6895-01 17 38250298 38250298 G A NR1D1 Silent p.S504S 0.30 TCGA-AD-6895-01 17 38346906 38346906 G A RAPGEFL1 Silent p.E203E 0.22 TCGA-AD-6895-01 17 38551787 38551787 T C TOP2A Missense_Mutation p.E1242G 0.31 deleterious(0.04) benign(0.206) TCGA-AD-6895-01 17 38552557 38552557 T A TOP2A Missense_Mutation p.K1233M 0.23 deleterious(0.01) probably_damaging(0.926) TCGA-AD-6895-01 17 38552562 38552562 T A TOP2A Silent p.A1231A 0.21 TCGA-AD-6895-01 17 38569498 38569498 G T TOP2A Silent p.T175T 0.23 TCGA-AD-6895-01 17 38978230 38978230 A G KRT10 Missense_Mutation p.I203T 0.23 deleterious(0.01) probably_damaging(0.967) TCGA-AD-6895-01 17 39296603 39296603 C T KRTAP4-6 Missense_Mutation p.C46Y 0.29 deleterious(0.01) unknown(0) TCGA-AD-6895-01 17 39553197 39553197 G A KRT31 Silent p.N133N 0.38 TCGA-AD-6895-01 17 39923674 39923674 G A JUP Missense_Mutation p.T289I 0.29 deleterious(0.04) possibly_damaging(0.809) TCGA-AD-6895-01 17 39994343 39994343 T C KLHL10 Silent p.H53H 0.06 TCGA-AD-6895-01 17 40001602 40001602 C T KLHL10 Silent p.S303S 0.26 TCGA-AD-6895-01 17 40174510 40174510 G - NKIRAS2 Frame_Shift_Del p.L65Sfs*66 0.29 TCGA-AD-6895-01 17 4020435 4020435 C T ZZEF1 Silent p.S175S 0.25 TCGA-AD-6895-01 17 40557003 40557003 G A PTRF Missense_Mutation p.T292M 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-AD-6895-01 17 40557348 40557348 G A PTRF Missense_Mutation p.A177V 0.18 tolerated(0.17) benign(0.018) TCGA-AD-6895-01 17 40817719 40817719 C T TUBG2 Silent p.S239S 0.32 TCGA-AD-6895-01 17 40825491 40825491 C - PLEKHH3 Frame_Shift_Del p.V192Wfs*6 0.22 TCGA-AD-6895-01 17 40843470 40843470 C T CNTNAP1 Missense_Mutation p.T762M 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-AD-6895-01 17 40914372 40914372 G - RAMP2 Splice_Site p.X56_splice 0.13 TCGA-AD-6895-01 17 41297124 41297124 A - NBR2 3'Flank 0.24 TCGA-AD-6895-01 17 42086025 42086025 C T NAGS 3'UTR 0.32 TCGA-AD-6895-01 17 42113621 42113621 A C LSM12 Silent p.R181R 0.09 TCGA-AD-6895-01 17 42231990 42231990 C T C17orf53 Missense_Mutation p.R507W 0.22 deleterious(0.02) possibly_damaging(0.604) TCGA-AD-6895-01 17 423084 423084 C T VPS53 Silent p.Q770Q 0.17 TCGA-AD-6895-01 17 42432555 42432555 G A FAM171A2 Missense_Mutation p.R343C 0.19 deleterious(0) probably_damaging(0.963) TCGA-AD-6895-01 17 42462692 42462692 G A ITGA2B Missense_Mutation p.R196C 0.38 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 43181246 43181246 T A NMT1 Splice_Site p.X444_splice 0.27 TCGA-AD-6895-01 17 43190017 43190017 C T PLCD3 Silent p.T778T 0.31 TCGA-AD-6895-01 17 43246672 43246672 G A HEXIM2 Silent p.R119R 0.31 TCGA-AD-6895-01 17 43309754 43309755 - C FMNL1 Frame_Shift_Ins p.A81Rfs*23 0.22 TCGA-AD-6895-01 17 43345018 43345018 G A MAP3K14-AS1 RNA 0.11 TCGA-AD-6895-01 17 43522955 43522955 C T PLEKHM1 Silent p.A906A 0.26 TCGA-AD-6895-01 17 4686311 4686311 C T TM4SF5 Silent p.C186C 0.27 TCGA-AD-6895-01 17 47785094 47785094 C T SLC35B1 Silent p.K34K 0.25 TCGA-AD-6895-01 17 4805202 4805202 C T C17orf107 3'UTR 0.38 TCGA-AD-6895-01 17 48156541 48156541 G T ITGA3 Silent p.T834T 0.32 TCGA-AD-6895-01 17 48453345 48453345 G A EME1 Splice_Site p.X259_splice 0.19 TCGA-AD-6895-01 17 48557385 48557385 G A RSAD1 Silent p.P138P 0.27 TCGA-AD-6895-01 17 53007453 53007453 G A TOM1L1 Missense_Mutation p.R247Q 0.23 tolerated(0.07) possibly_damaging(0.899) TCGA-AD-6895-01 17 53798148 53798148 G T TMEM100 Missense_Mutation p.S95Y 0.28 tolerated(0.68) benign(0.165) TCGA-AD-6895-01 17 55123277 55123277 G A RNF126P1 RNA 0.42 TCGA-AD-6895-01 17 56051937 56051937 A T VEZF1 Missense_Mutation p.L488Q 0.25 deleterious_low_confidence(0) benign(0.193) TCGA-AD-6895-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.46 TCGA-AD-6895-01 17 56435431 56435431 G T RNF43 Missense_Mutation p.P569H 0.38 deleterious_low_confidence(0) possibly_damaging(0.572) TCGA-AD-6895-01 17 56635191 56635191 A - TEX14 Frame_Shift_Del p.W1476Gfs*4 0.20 TCGA-AD-6895-01 17 56663426 56663426 C T TEX14 Missense_Mutation p.A942T 0.22 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 57109446 57109446 T A TRIM37 Missense_Mutation p.S587C 0.31 tolerated_low_confidence(0.09) benign(0.002) TCGA-AD-6895-01 17 57287390 57287390 G A SMG8 5'UTR 0.40 TCGA-AD-6895-01 17 57737842 57737842 C T CLTC Missense_Mutation p.R354C 0.17 deleterious(0.01) benign(0.098) TCGA-AD-6895-01 17 57895084 57895084 T A VMP1 Silent p.V308V 0.07 TCGA-AD-6895-01 17 57895086 57895086 T C VMP1 Missense_Mutation p.I309T 0.07 deleterious(0) possibly_damaging(0.883) TCGA-AD-6895-01 17 58234013 58234013 C T CA4 Missense_Mutation p.R69C 0.24 deleterious(0) possibly_damaging(0.782) TCGA-AD-6895-01 17 59945339 59945339 A - INTS2 Frame_Shift_Del p.F1100Lfs*26 0.19 TCGA-AD-6895-01 17 59989359 59989359 G A INTS2 Missense_Mutation p.A249V 0.35 tolerated(0.55) benign(0.285) TCGA-AD-6895-01 17 60028269 60028269 A C MED13 Missense_Mutation p.S2070A 0.21 deleterious(0) benign(0.039) TCGA-AD-6895-01 17 61897705 61897707 CTT - FTSJ3 In_Frame_Del p.K722del 0.20 TCGA-AD-6895-01 17 61911601 61911601 G A SMARCD2 Missense_Mutation p.L337F 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-AD-6895-01 17 61949449 61949449 C G CSH2 3'UTR 0.29 TCGA-AD-6895-01 17 62290198 62290198 G A TEX2 Silent p.D460D 0.23 TCGA-AD-6895-01 17 62758678 62758678 A T hsa-mir-6080 RNA 0.27 TCGA-AD-6895-01 17 6428680 6428680 A G PITPNM3 Silent p.H74H 0.26 TCGA-AD-6895-01 17 648854 648854 C T GEMIN4 Missense_Mutation p.G810E 0.23 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 66267456 66267456 G A SLC16A6 Missense_Mutation p.P282L 0.26 tolerated(0.09) benign(0.36) TCGA-AD-6895-01 17 67170424 67170425 - A ABCA10 Frame_Shift_Ins p.I1054Yfs*16 0.16 TCGA-AD-6895-01 17 67218780 67218780 T - ABCA10 Frame_Shift_Del p.K31Nfs*18 0.19 TCGA-AD-6895-01 17 68128833 68128833 G A KCNJ16 Missense_Mutation p.R202H 0.21 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 685555 685556 - G GLOD4 5'UTR 0.24 TCGA-AD-6895-01 17 70117624 70117624 C T SOX9 Missense_Mutation p.A31V 0.32 tolerated(0.13) benign(0.033) TCGA-AD-6895-01 17 7120464 7120464 C T DLG4 Intron 0.25 TCGA-AD-6895-01 17 71228233 71228233 G C FAM104A Silent p.L71L 0.33 TCGA-AD-6895-01 17 71228238 71228238 G A FAM104A Missense_Mutation p.R70C 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AD-6895-01 17 71232732 71232732 T A C17orf80 Missense_Mutation p.S371T 0.37 deleterious(0.02) benign(0.056) TCGA-AD-6895-01 17 7140047 7140047 G A PHF23 Nonsense_Mutation p.R67* 0.21 TCGA-AD-6895-01 17 72366742 72366742 C T GPR142 Silent p.I147I 0.27 TCGA-AD-6895-01 17 7256746 7256746 G A KCTD11 Missense_Mutation p.R162H 0.37 tolerated(0.16) benign(0.001) TCGA-AD-6895-01 17 72840411 72840411 C T GRIN2C Intron 0.31 TCGA-AD-6895-01 17 72858996 72858996 C T FDXR Silent p.G516G 0.30 TCGA-AD-6895-01 17 72926891 72926891 C T OTOP2 Silent p.I387I 0.42 TCGA-AD-6895-01 17 7319074 7319074 C T NLGN2 Missense_Mutation p.R428W 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6895-01 17 73490980 73490980 T C KIAA0195 Missense_Mutation p.F865L 0.26 deleterious(0) probably_damaging(0.995) TCGA-AD-6895-01 17 73492380 73492380 T C KIAA0195 Missense_Mutation p.L1024P 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6895-01 17 73518289 73518289 C T TSEN54 Missense_Mutation p.S376F 0.12 deleterious(0) probably_damaging(0.94) TCGA-AD-6895-01 17 73832933 73832933 G A UNC13D Silent p.P374P 0.21 TCGA-AD-6895-01 17 73836169 73836169 G A UNC13D Missense_Mutation p.S294L 0.29 tolerated(0.17) benign(0.028) TCGA-AD-6895-01 17 73886796 73886796 C T TRIM65 3'UTR 0.19 TCGA-AD-6895-01 17 74053557 74053557 G A SRP68 Missense_Mutation p.T302M 0.16 deleterious(0) possibly_damaging(0.872) TCGA-AD-6895-01 17 74288254 74288254 C T QRICH2 Missense_Mutation p.V686I 0.42 deleterious(0.03) benign(0.034) TCGA-AD-6895-01 17 74289598 74289598 G A QRICH2 Missense_Mutation p.P238S 0.14 tolerated(0.47) benign(0.03) TCGA-AD-6895-01 17 74563601 74563601 A - ST6GALNAC2 Frame_Shift_Del p.F297Lfs*15 0.21 TCGA-AD-6895-01 17 74570528 74570528 C T ST6GALNAC2 Missense_Mutation p.G94R 0.27 benign(0.049) TCGA-AD-6895-01 17 7467090 7467090 C T SENP3 Missense_Mutation p.P233S 0.25 tolerated(0.21) benign(0.137) TCGA-AD-6895-01 17 7533517 7533517 C T SHBG Silent p.T9T 0.33 TCGA-AD-6895-01 17 76227553 76227553 G A TMEM235 5'Flank 0.29 TCGA-AD-6895-01 17 7646343 7646343 G A DNAH2 Missense_Mutation p.R596Q 0.18 probably_damaging(0.997) TCGA-AD-6895-01 17 76887750 76887750 C T DDC8 Missense_Mutation p.R279K 0.35 deleterious(0) probably_damaging(0.996) TCGA-AD-6895-01 17 77092758 77092758 C T RBFOX3 Missense_Mutation p.G258R 0.20 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-AD-6895-01 17 77093457 77093457 G A RBFOX3 Silent p.G224G 0.30 TCGA-AD-6895-01 17 7758770 7758770 G A TMEM88 Missense_Mutation p.R73H 0.20 tolerated(1) benign(0) TCGA-AD-6895-01 17 77770738 77770738 G A CBX8 Silent p.R20R 0.39 TCGA-AD-6895-01 17 77914679 77914679 G A TBC1D16 Silent p.D761D 0.33 TCGA-AD-6895-01 17 78032409 78032409 G A CCDC40 Missense_Mutation p.E426K 0.45 deleterious(0) possibly_damaging(0.666) TCGA-AD-6895-01 17 78055729 78055729 G A CCDC40 Missense_Mutation p.E621K 0.28 tolerated(0.18) possibly_damaging(0.701) TCGA-AD-6895-01 17 7814196 7814196 C T CHD3 Missense_Mutation p.P1988L 0.21 possibly_damaging(0.726) TCGA-AD-6895-01 17 78291079 78291079 T C RNF213 Splice_Site p.X967_splice 0.27 TCGA-AD-6895-01 17 79059488 79059488 T C BAIAP2 Missense_Mutation p.L105P 0.33 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 79108218 79108218 C T AATK Missense_Mutation p.V47I 0.29 tolerated(0.08) benign(0.01) TCGA-AD-6895-01 17 79169743 79169743 C T AZI1 Silent p.E636E 0.38 TCGA-AD-6895-01 17 79220400 79220400 C A SLC38A10 Silent p.T772T 0.35 TCGA-AD-6895-01 17 79410249 79410249 C T RP11-1055B8.7 Missense_Mutation p.A625V 0.19 benign(0.173) TCGA-AD-6895-01 17 79412654 79412654 A T RP11-1055B8.7 Missense_Mutation p.E1037V 0.27 benign(0.004) TCGA-AD-6895-01 17 79422295 79422295 C T RP11-1055B8.7 Missense_Mutation p.A1483V 0.15 benign(0.357) TCGA-AD-6895-01 17 79860653 79860653 G C NPB 3'UTR 0.27 TCGA-AD-6895-01 17 79898797 79898797 C T MYADML2 Nonsense_Mutation p.W274* 0.23 TCGA-AD-6895-01 17 80018654 80018656 CTC - DUS1L In_Frame_Del p.E315del 0.28 TCGA-AD-6895-01 17 80041417 80041417 C T FASN Missense_Mutation p.D1773N 0.13 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 17 80043245 80043245 G T FASN Missense_Mutation p.L1386M 0.35 deleterious(0.02) possibly_damaging(0.632) TCGA-AD-6895-01 17 80049440 80049440 G A FASN Missense_Mutation p.R384C 0.27 deleterious(0.03) benign(0.003) TCGA-AD-6895-01 17 80059588 80059588 G - FASN 5'Flank 0.26 TCGA-AD-6895-01 17 80601875 80601875 T A WDR45B Missense_Mutation p.N31I 0.22 tolerated(0.05) benign(0.211) TCGA-AD-6895-01 17 8065039 8065039 C T VAMP2 Missense_Mutation p.D57N 0.41 deleterious(0) possibly_damaging(0.709) TCGA-AD-6895-01 17 8167233 8167233 C T PFAS Silent p.G590G 0.56 TCGA-AD-6895-01 17 8192927 8192927 G A SLC25A35 3'UTR 0.26 TCGA-AD-6895-01 17 9083206 9083206 G A NTN1 Silent p.T430T 0.17 TCGA-AD-6895-01 17 9511483 9511483 C T WDR16 Silent p.G267G 0.22 TCGA-AD-6895-01 17 9808388 9808388 T G RCVRN Missense_Mutation p.K37T 0.20 deleterious(0) benign(0.145) TCGA-AD-6895-01 18 10487720 10487720 C T APCDD1 Silent p.C410C 0.38 TCGA-AD-6895-01 18 12884092 12884092 G A PTPN2 Missense_Mutation p.R17C 0.19 tolerated(0.05) benign(0) TCGA-AD-6895-01 18 15316521 15316521 C T RNU6-721P 3'Flank 0.24 TCGA-AD-6895-01 18 21086968 21086968 T - C18orf8 Frame_Shift_Del p.S73Pfs*2 0.18 TCGA-AD-6895-01 18 22007881 22007881 A T IMPACT Splice_Site p.X13_splice 0.08 TCGA-AD-6895-01 18 24126895 24126895 G T KCTD1 Intron 0.23 TCGA-AD-6895-01 18 24497274 24497274 T - CHST9 Frame_Shift_Del p.K94Rfs*15 0.19 TCGA-AD-6895-01 18 28736050 28736050 A G DSC1 Silent p.L143L 0.08 TCGA-AD-6895-01 18 30260177 30260177 C T KLHL14 Missense_Mutation p.V515I 0.27 deleterious(0.04) benign(0.043) TCGA-AD-6895-01 18 30349921 30349921 C T KLHL14 Missense_Mutation p.D212N 0.28 tolerated(0.49) possibly_damaging(0.892) TCGA-AD-6895-01 18 3879556 3879556 G A DLGAP1 Silent p.D171D 0.35 TCGA-AD-6895-01 18 3879598 3879598 C T DLGAP1 Silent p.G157G 0.27 TCGA-AD-6895-01 18 42281739 42281739 G A SETBP1 Missense_Mutation p.R143H 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-AD-6895-01 18 42456737 42456737 A T SETBP1 Intron 0.27 TCGA-AD-6895-01 18 43316498 43316498 C T SLC14A1 Missense_Mutation p.A239V 0.26 tolerated(0.39) benign(0.138) TCGA-AD-6895-01 18 43316572 43316572 A G SLC14A1 Missense_Mutation p.T264A 0.24 tolerated(0.49) benign(0.001) TCGA-AD-6895-01 18 44101229 44101229 G T LOXHD1 Missense_Mutation p.A590D 0.09 deleterious(0.02) probably_damaging(0.917) TCGA-AD-6895-01 18 44104677 44104677 G A LOXHD1 Silent p.Y467Y 0.36 TCGA-AD-6895-01 18 44560470 44560470 T A TCEB3B Missense_Mutation p.Y389F 0.19 deleterious(0) possibly_damaging(0.739) TCGA-AD-6895-01 18 44561532 44561532 G T TCEB3B Missense_Mutation p.S35Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-AD-6895-01 18 45567053 45567053 A G ZBTB7C Silent p.D142D 0.28 TCGA-AD-6895-01 18 47110052 47110052 G T LIPG Missense_Mutation p.K428N 0.31 tolerated(0.2) benign(0.026) TCGA-AD-6895-01 18 48255857 48255857 C T MAPK4 Missense_Mutation p.A466V 0.36 tolerated_low_confidence(0.18) benign(0.048) TCGA-AD-6895-01 18 5416021 5416021 C T EPB41L3 Silent p.L621L 0.29 TCGA-AD-6895-01 18 56148861 56148861 G A ALPK2 3'UTR 0.31 TCGA-AD-6895-01 18 56615342 56615342 C A ZNF532 Missense_Mutation p.Q917K 0.29 tolerated(0.62) possibly_damaging(0.861) TCGA-AD-6895-01 18 57026321 57026321 G A LMAN1 Silent p.F52F 0.20 TCGA-AD-6895-01 18 65180980 65180980 T C DSEL Missense_Mutation p.Q299R 0.13 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 18 65181385 65181385 C T DSEL Missense_Mutation p.G164D 0.24 tolerated(0.37) benign(0.142) TCGA-AD-6895-01 18 67715217 67715217 A G RTTN Missense_Mutation p.V1844A 0.27 tolerated(0.38) benign(0.004) TCGA-AD-6895-01 18 6955526 6955526 C T LAMA1 Intron 0.30 TCGA-AD-6895-01 18 6986168 6986168 G A LAMA1 Missense_Mutation p.L1783F 0.20 tolerated(0.47) benign(0.008) TCGA-AD-6895-01 18 72632747 72632747 G A ZNF407 Intron 0.21 TCGA-AD-6895-01 18 72775184 72775184 C T ZNF407 Missense_Mutation p.A1836V 0.12 deleterious(0) probably_damaging(0.965) TCGA-AD-6895-01 18 77134019 77134019 G A ATP9B Silent p.T1064T 0.11 TCGA-AD-6895-01 18 9102736 9102736 C G NDUFV2 5'UTR 0.32 TCGA-AD-6895-01 18 9577157 9577157 A T PPP4R1 Silent p.P317P 0.24 TCGA-AD-6895-01 19 10132252 10132252 C T RDH8 Nonsense_Mutation p.R275* 0.32 TCGA-AD-6895-01 19 10206676 10206676 G A ANGPTL6 Silent p.G188G 0.33 TCGA-AD-6895-01 19 10625018 10625018 G A S1PR5 Missense_Mutation p.R224W 0.36 deleterious(0.01) possibly_damaging(0.861) TCGA-AD-6895-01 19 10791741 10791741 G A ILF3 Missense_Mutation p.G335D 0.48 deleterious(0.02) probably_damaging(1) TCGA-AD-6895-01 19 10940881 10940882 - C DNM2 Frame_Shift_Ins p.L793Pfs*31 0.30 TCGA-AD-6895-01 19 11027108 11027108 C T CARM1 Silent p.D291D 0.45 TCGA-AD-6895-01 19 11326479 11326479 C T DOCK6 Missense_Mutation p.R1340H 0.20 deleterious(0.01) possibly_damaging(0.762) TCGA-AD-6895-01 19 11332662 11332662 C T DOCK6 Missense_Mutation p.V1139M 0.24 deleterious(0.04) benign(0.089) TCGA-AD-6895-01 19 11356361 11356361 T A DOCK6 Missense_Mutation p.N301Y 0.35 deleterious(0) probably_damaging(0.987) TCGA-AD-6895-01 19 11517412 11517412 T C RGL3 Missense_Mutation p.T256A 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 19 11596576 11596576 T C ZNF653 Missense_Mutation p.N489D 0.24 deleterious(0.01) probably_damaging(0.917) TCGA-AD-6895-01 19 11598407 11598407 C T ZNF653 Missense_Mutation p.A291T 0.30 tolerated(0.94) benign(0.001) TCGA-AD-6895-01 19 11944772 11944772 A G ZNF440 3'UTR 0.26 TCGA-AD-6895-01 19 12721579 12721579 T C ZNF490 5'UTR 0.38 TCGA-AD-6895-01 19 12936727 12936727 G A RTBDN Silent p.D193D 0.36 TCGA-AD-6895-01 19 13409900 13409900 G A CACNA1A Silent p.L849L 0.17 TCGA-AD-6895-01 19 13882968 13882968 C - MRI1 Frame_Shift_Del p.H330Tfs*24 0.26 TCGA-AD-6895-01 19 14067013 14067013 C T DCAF15 Silent p.T184T 0.29 TCGA-AD-6895-01 19 14203850 14203850 T A PRKACA 3'UTR 0.20 TCGA-AD-6895-01 19 14267774 14267774 C T LPHN1 Missense_Mutation p.A982T 0.29 deleterious(0.04) possibly_damaging(0.646) TCGA-AD-6895-01 19 14273568 14273568 G A LPHN1 Missense_Mutation p.R354C 0.29 deleterious(0) probably_damaging(0.969) TCGA-AD-6895-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.37 TCGA-AD-6895-01 19 14521056 14521056 C T DDX39A Missense_Mutation p.R235Q 0.26 deleterious(0.02) benign(0.339) TCGA-AD-6895-01 19 14552114 14552114 C T PKN1 Missense_Mutation p.R67W 0.17 deleterious(0) probably_damaging(0.99) TCGA-AD-6895-01 19 14580163 14580163 G A PKN1 Missense_Mutation p.E669K 0.25 deleterious(0.03) probably_damaging(0.983) TCGA-AD-6895-01 19 14765800 14765800 T C EMR3 Missense_Mutation p.S191G 0.35 tolerated(0.13) benign(0.036) TCGA-AD-6895-01 19 1482154 1482154 G A PCSK4 Silent p.P624P 0.46 TCGA-AD-6895-01 19 15132628 15132628 C T CCDC105 Missense_Mutation p.S383L 0.19 tolerated(0.58) benign(0.016) TCGA-AD-6895-01 19 15198309 15198309 C T OR1I1 Silent p.L145L 0.20 TCGA-AD-6895-01 19 15349068 15349068 C T BRD4 3'UTR 0.38 TCGA-AD-6895-01 19 15349876 15349876 C T BRD4 Missense_Mutation p.R1259H 0.21 benign(0.004) TCGA-AD-6895-01 19 1555227 1555227 G A MEX3D 3'UTR 0.22 TCGA-AD-6895-01 19 15562543 15562544 - C RASAL3 3'UTR 0.33 TCGA-AD-6895-01 19 16003187 16003187 G T CYP4F2 Missense_Mutation p.P153T 0.36 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 19 16860011 16860011 C T NWD1 Silent p.T186T 0.23 TCGA-AD-6895-01 19 17213251 17213251 G A MYO9B Missense_Mutation p.G242S 0.31 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 19 17373670 17373671 - GG USHBP1 Frame_Shift_Ins p.G112Lfs*16 0.20 TCGA-AD-6895-01 19 17534316 17534316 C T MVB12A Silent p.G141G 0.47 TCGA-AD-6895-01 19 17679360 17679360 C T COLGALT1 Nonsense_Mutation p.R223* 0.26 TCGA-AD-6895-01 19 18191784 18191784 G A IL12RB1 Silent p.F89F 0.19 TCGA-AD-6895-01 19 18255303 18255303 G A MAST3 Missense_Mutation p.R842H 0.40 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-AD-6895-01 19 18255820 18255820 C T MAST3 Silent p.G911G 0.27 TCGA-AD-6895-01 19 1828200 1828200 G A REXO1 Silent p.G196G 0.35 TCGA-AD-6895-01 19 18284647 18284647 C T IFI30 5'UTR 0.33 TCGA-AD-6895-01 19 18305801 18305801 G A MPV17L2 Missense_Mutation p.V157M 0.08 deleterious(0.04) benign(0.426) TCGA-AD-6895-01 19 18420647 18420647 G A LSM4 Missense_Mutation p.P57S 0.21 tolerated(0.13) benign(0.194) TCGA-AD-6895-01 19 18543990 18543990 G A SSBP4 Missense_Mutation p.A320T 0.33 tolerated_low_confidence(0.08) benign(0.081) TCGA-AD-6895-01 19 18724755 18724755 G A TMEM59L Missense_Mutation p.R82H 0.30 deleterious(0.01) probably_damaging(1) TCGA-AD-6895-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.31 TCGA-AD-6895-01 19 19413132 19413132 C T SUGP1 Missense_Mutation p.G277R 0.21 deleterious(0.03) probably_damaging(0.921) TCGA-AD-6895-01 19 19626883 19626883 C - NDUFA13 5'UTR 0.36 TCGA-AD-6895-01 19 19650544 19650544 G A CILP2 Missense_Mutation p.V41M 0.26 tolerated_low_confidence(0.2) benign(0.002) TCGA-AD-6895-01 19 19767709 19767709 T G ATP13A1 Missense_Mutation p.K308T 0.12 deleterious(0) probably_damaging(0.98) TCGA-AD-6895-01 19 20044269 20044270 - A ZNF93 Frame_Shift_Ins p.P172Tfs*12 0.25 TCGA-AD-6895-01 19 20229928 20229928 C T ZNF90 Missense_Mutation p.S522L 0.20 deleterious(0.02) benign(0.066) TCGA-AD-6895-01 19 20308487 20308487 C T ZNF486 Missense_Mutation p.T323M 0.18 deleterious(0) benign(0.011) TCGA-AD-6895-01 19 20807526 20807526 G A ZNF626 Missense_Mutation p.T386M 0.31 deleterious(0.04) possibly_damaging(0.811) TCGA-AD-6895-01 19 2338759 2338759 G - SPPL2B RNA 0.27 TCGA-AD-6895-01 19 23544412 23544412 T A ZNF91 Missense_Mutation p.T457S 0.07 tolerated(0.21) benign(0.223) TCGA-AD-6895-01 19 2933759 2933759 G A ZNF77 Nonsense_Mutation p.R456* 0.36 TCGA-AD-6895-01 19 3119326 3119326 G A GNA11 Silent p.S286S 0.20 TCGA-AD-6895-01 19 31767752 31767752 A G TSHZ3 Missense_Mutation p.S983P 0.31 deleterious(0) probably_damaging(0.987) TCGA-AD-6895-01 19 31769252 31769252 C T TSHZ3 Missense_Mutation p.E483K 0.29 tolerated(0.5) benign(0.254) TCGA-AD-6895-01 19 3204720 3204720 C T NCLN Silent p.D393D 0.25 TCGA-AD-6895-01 19 33076724 33076724 A G PDCD5 Missense_Mutation p.S57G 0.21 tolerated(0.07) benign(0.376) TCGA-AD-6895-01 19 33096771 33096771 G A ANKRD27 Silent p.G821G 0.25 TCGA-AD-6895-01 19 33609927 33609927 G A GPATCH1 Missense_Mutation p.A809T 0.29 tolerated(0.55) benign(0.008) TCGA-AD-6895-01 19 3599997 3599997 G A TBXA2R Silent p.F212F 0.19 TCGA-AD-6895-01 19 36018925 36018925 C T SBSN Missense_Mutation p.V87I 0.29 tolerated(0.77) possibly_damaging(0.485) TCGA-AD-6895-01 19 36034314 36034314 C T GAPDHS Missense_Mutation p.R272W 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-AD-6895-01 19 36110564 36110564 C T HAUS5 Missense_Mutation p.A437V 0.30 tolerated(0.14) benign(0.126) TCGA-AD-6895-01 19 36145535 36145535 T C COX6B1 Missense_Mutation p.Y57H 0.44 tolerated(0.06) possibly_damaging(0.582) TCGA-AD-6895-01 19 36606397 36606397 G A TBCB 5'UTR 0.73 TCGA-AD-6895-01 19 36606546 36606546 C T TBCB Silent p.Y28Y 0.26 TCGA-AD-6895-01 19 37211381 37211381 A T ZNF567 Silent p.G554G 0.14 TCGA-AD-6895-01 19 37618889 37618889 A G ZNF420 Silent p.E332E 0.24 TCGA-AD-6895-01 19 37642422 37642422 T C ZNF585A 3'UTR 0.18 TCGA-AD-6895-01 19 37642893 37642893 A T ZNF585A Nonsense_Mutation p.C581* 0.32 TCGA-AD-6895-01 19 37642910 37642910 C T ZNF585A Missense_Mutation p.E576K 0.30 deleterious(0.01) possibly_damaging(0.573) TCGA-AD-6895-01 19 37678038 37678038 T A ZNF585B Missense_Mutation p.E134V 0.28 tolerated(0.1) benign(0.312) TCGA-AD-6895-01 19 38912742 38912742 G A RASGRP4 Silent p.R25R 0.27 TCGA-AD-6895-01 19 39016081 39016081 T G RYR1 Missense_Mutation p.L3522R 0.12 benign(0.004) TCGA-AD-6895-01 19 40362825 40362825 G A FCGBP Missense_Mutation p.A5082V 0.30 benign(0.183) TCGA-AD-6895-01 19 40363231 40363231 C T FCGBP Missense_Mutation p.A4947T 0.24 probably_damaging(0.914) TCGA-AD-6895-01 19 40399728 40399728 G A FCGBP Silent p.C1989C 0.26 TCGA-AD-6895-01 19 40424316 40424316 C T FCGBP Silent p.L629L 0.26 TCGA-AD-6895-01 19 40698537 40698537 C A MAP3K10 Missense_Mutation p.A200D 0.19 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 19 40880506 40880506 T A PLD3 Missense_Mutation p.L333Q 0.17 deleterious(0.02) benign(0.148) TCGA-AD-6895-01 19 40889726 40889726 C T HIPK4 Silent p.Q262Q 0.25 TCGA-AD-6895-01 19 41096183 41096183 C T SHKBP1 Silent p.P541P 0.38 TCGA-AD-6895-01 19 41594955 41594955 G A CYP2A13 Missense_Mutation p.R101Q 0.26 deleterious(0.01) probably_damaging(1) TCGA-AD-6895-01 19 41895699 41895699 C T EXOSC5 Missense_Mutation p.V166M 0.26 tolerated(0.09) benign(0.007) TCGA-AD-6895-01 19 42402678 42402678 C T ARHGEF1 Silent p.P418P 0.22 TCGA-AD-6895-01 19 42471070 42471070 C T ATP1A3 3'UTR 0.29 TCGA-AD-6895-01 19 42861608 42861608 G A MEGF8 Missense_Mutation p.R1561H 0.17 deleterious(0) probably_damaging(0.983) TCGA-AD-6895-01 19 44097417 44097417 C T IRGQ Silent p.S211S 0.29 TCGA-AD-6895-01 19 44500546 44500546 T C ZNF155 Silent p.D190D 0.17 TCGA-AD-6895-01 19 44570550 44570550 C G ZNF223 Missense_Mutation p.A190G 0.32 tolerated(0.45) benign(0.006) TCGA-AD-6895-01 19 44570979 44570979 A T ZNF223 Missense_Mutation p.K333M 0.33 tolerated(0.09) benign(0.065) TCGA-AD-6895-01 19 44679970 44679970 C T ZNF226 Silent p.N185N 0.24 TCGA-AD-6895-01 19 44933156 44933156 G A ZNF229 Silent p.Y600Y 0.25 TCGA-AD-6895-01 19 45175935 45175935 G A CEACAM19 Silent p.E41E 0.38 TCGA-AD-6895-01 19 45179626 45179626 G A CEACAM19 Missense_Mutation p.G170R 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-AD-6895-01 19 45593739 45593739 G A GEMIN7 Missense_Mutation p.D123N 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 19 45731011 45731011 G A EXOC3L2 Nonsense_Mutation p.R105* 0.34 TCGA-AD-6895-01 19 46136160 46136160 C - EML2 Frame_Shift_Del p.V358Cfs*83 0.19 TCGA-AD-6895-01 19 46137656 46137656 C T EML2 Missense_Mutation p.A286T 0.26 deleterious(0) probably_damaging(0.967) TCGA-AD-6895-01 19 46141770 46141770 C A EML2 Nonsense_Mutation p.E259* 0.27 TCGA-AD-6895-01 19 46307922 46307922 A T RSPH6A Missense_Mutation p.I414N 0.27 deleterious(0) probably_damaging(0.973) TCGA-AD-6895-01 19 46393819 46393819 G A MYPOP 3'UTR 0.40 TCGA-AD-6895-01 19 46627350 46627350 T C IGFL3 Missense_Mutation p.Y48C 0.22 deleterious(0.03) probably_damaging(0.993) TCGA-AD-6895-01 19 47422569 47422569 G A ARHGAP35 Missense_Mutation p.A213T 0.33 tolerated(0.15) benign(0.017) TCGA-AD-6895-01 19 47440587 47440587 C T ARHGAP35 Missense_Mutation p.P1250S 0.22 deleterious(0) probably_damaging(0.994) TCGA-AD-6895-01 19 47858312 47858312 G A DHX34 Missense_Mutation p.R241H 0.12 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 19 48281909 48281909 T C SEPW1 5'UTR 0.31 TCGA-AD-6895-01 19 48643325 48643325 G T LIG1 Silent p.V330V 0.40 TCGA-AD-6895-01 19 48894662 48894662 G - KDELR1 5'UTR 0.28 TCGA-AD-6895-01 19 48945183 48945183 G A GRIN2D Missense_Mutation p.D804N 0.11 tolerated(0.26) probably_damaging(1) TCGA-AD-6895-01 19 48953746 48953746 C T GRWD1 Silent p.G215G 0.22 TCGA-AD-6895-01 19 49206566 49206566 C T FUT2 Missense_Mutation p.T118M 0.19 tolerated(0.17) benign(0.378) TCGA-AD-6895-01 19 49207430 49207430 G A FUT2 3'UTR 0.28 TCGA-AD-6895-01 19 49253680 49253680 C T FUT1 Missense_Mutation p.E287K 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6895-01 19 49793514 49793514 C T SLC6A16 Missense_Mutation p.G693R 0.26 tolerated(0.67) benign(0.001) TCGA-AD-6895-01 19 50161519 50161519 C T SCAF1 Missense_Mutation p.R1268W 0.26 probably_damaging(0.994) TCGA-AD-6895-01 19 50188039 50188039 G A PRMT1 Missense_Mutation p.R195Q 0.16 tolerated(0.06) benign(0.183) TCGA-AD-6895-01 19 50214056 50214056 G A CPT1C Missense_Mutation p.R603Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 19 50357726 50357726 G - PTOV1 Frame_Shift_Del p.G80Vfs*4 0.27 TCGA-AD-6895-01 19 50384601 50384601 C T TBC1D17 Silent p.S132S 0.13 TCGA-AD-6895-01 19 50397641 50397641 C T IL4I1 Missense_Mutation p.E173K 0.42 tolerated(0.05) benign(0.244) TCGA-AD-6895-01 19 50752275 50752275 C T MYH14 Missense_Mutation p.A454V 0.35 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 19 50931460 50931460 G T SPIB Missense_Mutation p.R219L 0.24 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 19 51227196 51227196 G - CLEC11A Frame_Shift_Del p.D63Mfs*77 0.08 TCGA-AD-6895-01 19 51527988 51527988 A G KLK11 Missense_Mutation p.W67R 0.35 deleterious(0) probably_damaging(0.983) TCGA-AD-6895-01 19 51649339 51649339 C A SIGLEC7 Missense_Mutation p.H330N 0.26 tolerated(0.07) possibly_damaging(0.87) TCGA-AD-6895-01 19 51844469 51844469 G A VSIG10L Missense_Mutation p.T278M 0.12 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 19 51890493 51890493 C T LIM2 Missense_Mutation p.A69T 0.10 tolerated_low_confidence(0.49) benign(0) TCGA-AD-6895-01 19 52091192 52091192 C T ZNF175 Silent p.C536C 0.29 TCGA-AD-6895-01 19 5225784 5225784 G A PTPRS Silent p.G816G 0.21 TCGA-AD-6895-01 19 52394723 52394723 A T ZNF649 Silent p.T222T 0.24 TCGA-AD-6895-01 19 52569187 52569187 C T ZNF841 Missense_Mutation p.E650K 0.30 deleterious(0.04) possibly_damaging(0.644) TCGA-AD-6895-01 19 52659267 52659267 T A ZNF836 Missense_Mutation p.N557Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 19 52869876 52869876 A T ZNF610 Silent p.L415L 0.17 TCGA-AD-6895-01 19 52888460 52888460 A G ZNF880 Missense_Mutation p.T543A 0.29 deleterious(0.02) benign(0.005) TCGA-AD-6895-01 19 52941328 52941328 A C ZNF534 Missense_Mutation p.Q218H 0.31 deleterious(0.04) benign(0.011) TCGA-AD-6895-01 19 53056667 53056667 A G ZNF808 Silent p.E166E 0.23 TCGA-AD-6895-01 19 53057889 53057889 A T ZNF808 Nonsense_Mutation p.K574* 0.21 TCGA-AD-6895-01 19 53117936 53117936 A C ZNF83 5'UTR 0.22 TCGA-AD-6895-01 19 53207849 53207849 T C ZNF611 3'UTR 0.23 TCGA-AD-6895-01 19 53269484 53269484 G C ZNF600 Missense_Mutation p.L509V 0.20 tolerated(0.74) benign(0.098) TCGA-AD-6895-01 19 53301706 53301706 G A ZNF28 3'UTR 0.24 TCGA-AD-6895-01 19 53572977 53572977 C T ZNF160 Silent p.S270S 0.09 TCGA-AD-6895-01 19 535838 535838 C T CDC34 Missense_Mutation p.A60V 0.29 deleterious(0.04) benign(0.234) TCGA-AD-6895-01 19 53856596 53856596 A G ZNF845 Missense_Mutation p.N890D 0.14 tolerated(0.38) possibly_damaging(0.815) TCGA-AD-6895-01 19 54233169 54233169 A G MIR518E RNA 0.23 TCGA-AD-6895-01 19 54378034 54378034 T C MYADM 3'UTR 0.10 TCGA-AD-6895-01 19 54667604 54667604 G - TMC4 Frame_Shift_Del p.Q383Rfs*6 0.32 TCGA-AD-6895-01 19 55107952 55107952 C T LILRA1 Silent p.V419V 0.17 TCGA-AD-6895-01 19 56012520 56012520 C T SSC5D Missense_Mutation p.R913W 0.33 possibly_damaging(0.859) TCGA-AD-6895-01 19 56538393 56538393 C T NLRP5 Missense_Mutation p.T265M 0.10 tolerated(0.42) benign(0.001) TCGA-AD-6895-01 19 56733563 56733563 G A ZSCAN5A Missense_Mutation p.A291V 0.17 tolerated(0.21) benign(0.069) TCGA-AD-6895-01 19 56736166 56736166 G T ZSCAN5A Missense_Mutation p.L84M 0.18 tolerated(0.31) probably_damaging(1) TCGA-AD-6895-01 19 56935622 56935622 G A ZNF583 Missense_Mutation p.R532H 0.28 tolerated(0.16) probably_damaging(0.994) TCGA-AD-6895-01 19 57326787 57326787 C T PEG3 Missense_Mutation p.R1008H 0.27 tolerated(0.37) benign(0.014) TCGA-AD-6895-01 19 57839495 57839495 C T ZNF543 Missense_Mutation p.T222I 0.25 tolerated(0.09) benign(0.009) TCGA-AD-6895-01 19 57967646 57967646 T A VN1R1 Missense_Mutation p.Y70F 0.25 deleterious(0.01) possibly_damaging(0.803) TCGA-AD-6895-01 19 57988800 57988800 T G ZNF772 5'UTR 0.27 TCGA-AD-6895-01 19 58004770 58004770 C G ZNF419 Missense_Mutation p.T283S 0.19 tolerated(0.09) benign(0.347) TCGA-AD-6895-01 19 58005387 58005387 T C ZNF419 Missense_Mutation p.C489R 0.38 deleterious(0) probably_damaging(0.92) TCGA-AD-6895-01 19 58111429 58111429 G A ZNF530 5'UTR 0.21 TCGA-AD-6895-01 19 58290225 58290226 - G ZNF586 Frame_Shift_Ins p.E92Gfs*3 0.16 TCGA-AD-6895-01 19 58549582 58549582 G A ZSCAN1 Intron 0.33 TCGA-AD-6895-01 19 58578231 58578231 G A ZNF135 Missense_Mutation p.E151K 0.31 tolerated(0.39) benign(0.087) TCGA-AD-6895-01 19 58579353 58579353 A T ZNF135 Nonsense_Mutation p.K525* 0.20 TCGA-AD-6895-01 19 58639978 58639978 C T ZNF329 Missense_Mutation p.R298Q 0.24 tolerated(1) probably_damaging(0.973) TCGA-AD-6895-01 19 58867517 58867517 G A ZNF497 Silent p.R495R 0.22 TCGA-AD-6895-01 19 5917854 5917854 G A RANBP3 Silent p.D537D 0.30 TCGA-AD-6895-01 19 6421659 6421660 AC - KHSRP Splice_Site p.X129_splice 0.21 TCGA-AD-6895-01 19 648431 648431 G A RNF126 Missense_Mutation p.R243W 0.44 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 19 6732382 6732382 G A GPR108 Silent p.G339G 0.40 TCGA-AD-6895-01 19 7083105 7083105 A - ZNF557 Frame_Shift_Del p.T216Pfs*40 0.20 TCGA-AD-6895-01 19 7534892 7534892 G A ARHGEF18 Missense_Mutation p.R1109K 0.31 tolerated(0.16) benign(0.004) TCGA-AD-6895-01 19 7585855 7585855 G - ZNF358 3'UTR 0.25 TCGA-AD-6895-01 19 7598448 7598448 G A MCOLN1 Missense_Mutation p.A539T 0.20 tolerated(0.52) benign(0.007) TCGA-AD-6895-01 19 7747621 7747621 C T TRAPPC5 Missense_Mutation p.T161M 0.25 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 19 7806539 7806539 G A CD209 3'UTR 0.29 TCGA-AD-6895-01 19 7808070 7808070 G A CD209 Missense_Mutation p.A357V 0.35 tolerated(0.6) benign(0.006) TCGA-AD-6895-01 19 7927330 7927330 G A EVI5L Silent p.Q619Q 0.16 TCGA-AD-6895-01 19 7960585 7960585 G A LRRC8E Missense_Mutation p.V33M 0.08 tolerated(0.21) benign(0.333) TCGA-AD-6895-01 19 808381 808381 G T PTBP1 Missense_Mutation p.R392L 0.30 deleterious(0.03) possibly_damaging(0.594) TCGA-AD-6895-01 19 8188383 8188383 C - FBN3 Frame_Shift_Del p.G1016Afs*50 0.19 TCGA-AD-6895-01 19 8386868 8386868 G A RPS28 Missense_Mutation p.R40Q 0.25 deleterious(0.01) possibly_damaging(0.723) TCGA-AD-6895-01 19 847965 847965 C A PRTN3 Missense_Mutation p.P256H 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AD-6895-01 19 8654465 8654465 G A ADAMTS10 Silent p.G635G 0.24 TCGA-AD-6895-01 19 9005681 9005681 C T MUC16 Missense_Mutation p.R13242H 0.23 benign(0.262) TCGA-AD-6895-01 19 9026265 9026265 G A MUC16 Silent p.L12241L 0.29 TCGA-AD-6895-01 19 9058909 9058909 G A MUC16 Missense_Mutation p.H9513Y 0.30 unknown(0) TCGA-AD-6895-01 19 9059892 9059892 G A MUC16 Missense_Mutation p.T9185I 0.29 unknown(0) TCGA-AD-6895-01 19 9061401 9061401 A G MUC16 Missense_Mutation p.L8682P 0.32 unknown(0) TCGA-AD-6895-01 19 9062780 9062780 T A MUC16 Silent p.T8222T 0.29 TCGA-AD-6895-01 19 9075920 9075920 T C MUC16 Silent p.T3842T 0.29 TCGA-AD-6895-01 19 9271875 9271875 G A ZNF317 Silent p.K518K 0.36 TCGA-AD-6895-01 19 9491970 9491970 T C ZNF177 Silent p.F321F 0.35 TCGA-AD-6895-01 19 9677342 9677342 A G ZNF121 Silent p.C149C 0.33 TCGA-AD-6895-01 1 100194046 100194046 T A FRRS1 Intron 0.12 TCGA-AD-6895-01 1 10032101 10032101 C T NMNAT1 5'UTR 0.36 TCGA-AD-6895-01 1 100326971 100326971 T - AGL Intron 0.19 TCGA-AD-6895-01 1 100327835 100327835 T A AGL Missense_Mutation p.Y106N 0.28 deleterious(0) probably_damaging(0.996) TCGA-AD-6895-01 1 100380997 100380997 A G AGL Missense_Mutation p.E1405G 0.27 tolerated(0.1) benign(0.019) TCGA-AD-6895-01 1 10042490 10042490 A G NMNAT1 Missense_Mutation p.N191D 0.32 tolerated(0.12) benign(0.403) TCGA-AD-6895-01 1 100752722 100752722 C T RTCA Missense_Mutation p.T334M 0.11 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 1 103363710 103363710 C T COL11A1 Missense_Mutation p.A1425T 0.30 unknown(0) TCGA-AD-6895-01 1 10436627 10436627 G A KIF1B Silent p.P1765P 0.25 TCGA-AD-6895-01 1 10708045 10708045 C T CASZ1 Missense_Mutation p.A1104T 0.25 tolerated(1) benign(0.006) TCGA-AD-6895-01 1 107600357 107600357 G A PRMT6 Silent p.E340E 0.30 TCGA-AD-6895-01 1 107601687 107601687 T C PRMT6 3'UTR 0.11 TCGA-AD-6895-01 1 109270502 109270502 T C FNDC7 Missense_Mutation p.V395A 0.14 tolerated(0.12) benign(0.02) TCGA-AD-6895-01 1 109461327 109461328 - A GPSM2 Frame_Shift_Ins p.Y455Ifs*8 0.12 TCGA-AD-6895-01 1 109473905 109473905 T A GPSM2 3'UTR 0.29 TCGA-AD-6895-01 1 109810488 109810488 C T CELSR2 Missense_Mutation p.R2042W 0.25 deleterious(0.01) probably_damaging(0.952) TCGA-AD-6895-01 1 109810593 109810593 G A CELSR2 Missense_Mutation p.A2077T 0.27 tolerated(0.33) possibly_damaging(0.817) TCGA-AD-6895-01 1 110172043 110172043 A C AMPD2 Missense_Mutation p.D652A 0.14 tolerated(0.07) possibly_damaging(0.673) TCGA-AD-6895-01 1 110884006 110884006 A T RBM15 Missense_Mutation p.D660V 0.12 tolerated(0.13) benign(0.01) TCGA-AD-6895-01 1 111217049 111217049 G A KCNA3 Missense_Mutation p.T128M 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 1 111781398 111781398 T C CHI3L2 Silent p.H254H 0.28 TCGA-AD-6895-01 1 112999503 112999503 C T CTTNBP2NL Silent p.R463R 0.24 TCGA-AD-6895-01 1 113237175 113237175 C T MOV10 Missense_Mutation p.R466C 0.15 tolerated(0.05) benign(0.009) TCGA-AD-6895-01 1 115128032 115128032 C T DENND2C 3'UTR 0.27 TCGA-AD-6895-01 1 116676006 116676006 G T MAB21L3 3'UTR 0.20 TCGA-AD-6895-01 1 117086971 117086971 T - CD58 Frame_Shift_Del p.N109Ifs*6 0.08 TCGA-AD-6895-01 1 117087038 117087039 AC - CD58 Frame_Shift_Del p.S87Rfs*2 0.22 TCGA-AD-6895-01 1 117503993 117503993 T C PTGFRN Missense_Mutation p.Y448H 0.35 tolerated(0.09) probably_damaging(0.993) TCGA-AD-6895-01 1 117656011 117656011 C T TRIM45 Missense_Mutation p.A522T 0.37 deleterious(0.02) benign(0.133) TCGA-AD-6895-01 1 11808642 11808642 C T AGTRAP Silent p.R113R 0.16 TCGA-AD-6895-01 1 118439490 118439490 T A GDAP2 Missense_Mutation p.L306F 0.14 tolerated(0.49) possibly_damaging(0.629) TCGA-AD-6895-01 1 11849472 11849472 G T C1orf167 Missense_Mutation p.G1464V 0.35 deleterious_low_confidence(0) unknown(0) TCGA-AD-6895-01 1 118537125 118537125 A T SPAG17 Silent p.P1694P 0.25 TCGA-AD-6895-01 1 120165853 120165853 G C ZNF697 Missense_Mutation p.H371Q 0.60 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 1 1233231 1233231 G A ACAP3 Missense_Mutation p.R367C 0.30 deleterious(0) possibly_damaging(0.556) TCGA-AD-6895-01 1 1268068 1268069 - T TAS1R3 Frame_Shift_Ins p.H387Sfs*13 0.14 TCGA-AD-6895-01 1 12854192 12854193 - A PRAMEF1 Frame_Shift_Ins p.R140Kfs*23 0.18 TCGA-AD-6895-01 1 143906103 143906103 T C FAM72D Silent p.P88P 0.23 TCGA-AD-6895-01 1 144855784 144855784 C T PDE4DIP Missense_Mutation p.A2257T 0.14 deleterious(0.04) probably_damaging(0.955) TCGA-AD-6895-01 1 144882779 144882779 G A PDE4DIP Silent p.G1080G 0.12 TCGA-AD-6895-01 1 147231045 147231045 C T GJA5 Missense_Mutation p.R101H 0.17 tolerated(0.09) possibly_damaging(0.663) TCGA-AD-6895-01 1 148594438 148594438 T A NBPF15 Nonsense_Mutation p.L604* 0.30 TCGA-AD-6895-01 1 149858582 149858582 T C HIST2H2AC Missense_Mutation p.S20P 0.29 deleterious_low_confidence(0.02) unknown(0) TCGA-AD-6895-01 1 150049214 150049214 G A VPS45 Missense_Mutation p.G161R 0.23 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 1 150131249 150131249 C - PLEKHO1 Frame_Shift_Del p.Q256Rfs*6 0.26 TCGA-AD-6895-01 1 150234562 150234563 CT - CA14 Frame_Shift_Del p.L90Afs*38 0.25 TCGA-AD-6895-01 1 150485742 150485742 T C ECM1 Silent p.G501G 0.22 TCGA-AD-6895-01 1 150530537 150530537 G A ADAMTSL4 Missense_Mutation p.R765H 0.24 deleterious(0.01) possibly_damaging(0.74) TCGA-AD-6895-01 1 150686572 150686572 G A HORMAD1 Nonsense_Mutation p.Q90* 0.29 TCGA-AD-6895-01 1 150814920 150814920 C T ARNT Silent p.A84A 0.22 TCGA-AD-6895-01 1 150997194 150997194 G - PRUNE Frame_Shift_Del p.C148Lfs*5 0.22 TCGA-AD-6895-01 1 151006578 151006578 G A PRUNE Silent p.T410T 0.12 TCGA-AD-6895-01 1 151315111 151315111 G A RFX5 Missense_Mutation p.R468C 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AD-6895-01 1 151315864 151315864 T C RFX5 Missense_Mutation p.E271G 0.33 deleterious(0.03) possibly_damaging(0.619) TCGA-AD-6895-01 1 151665905 151665905 T A SNX27 Missense_Mutation p.N508K 0.21 tolerated(0.86) probably_damaging(0.985) TCGA-AD-6895-01 1 152083450 152083450 C T TCHH Nonsense_Mutation p.W748* 0.33 TCGA-AD-6895-01 1 152285281 152285281 G A FLG Missense_Mutation p.A694V 0.21 benign(0.087) TCGA-AD-6895-01 1 153271671 153271671 C T PGLYRP3 Silent p.G255G 0.26 TCGA-AD-6895-01 1 153598862 153598862 C T S100A13 Silent p.R29R 0.12 TCGA-AD-6895-01 1 153932901 153932901 G A SLC39A1 Silent p.L216L 0.38 TCGA-AD-6895-01 1 154108347 154108347 T A NUP210L Missense_Mutation p.T318S 0.32 tolerated(0.08) possibly_damaging(0.488) TCGA-AD-6895-01 1 154142924 154142924 C T TPM3 Missense_Mutation p.A243T 0.24 deleterious(0.01) possibly_damaging(0.739) TCGA-AD-6895-01 1 154144674 154144674 A G TPM3 Intron 0.33 TCGA-AD-6895-01 1 154296469 154296469 G C AQP10 Intron 0.31 TCGA-AD-6895-01 1 154407132 154407132 G A IL6R Missense_Mutation p.G199E 0.27 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 1 154543671 154543671 C T CHRNB2 Silent p.D124D 0.31 TCGA-AD-6895-01 1 154560638 154560638 A G ADAR Silent p.N994N 0.17 TCGA-AD-6895-01 1 154936230 154936230 G T SHC1 3'UTR 0.24 TCGA-AD-6895-01 1 154956217 154956217 G T FLAD1 Missense_Mutation p.R16M 0.43 possibly_damaging(0.507) TCGA-AD-6895-01 1 154989227 154989227 C T ZBTB7B 3'UTR 0.28 TCGA-AD-6895-01 1 155014041 155014041 C A DCST1 Missense_Mutation p.L234M 0.23 deleterious(0.01) probably_damaging(0.923) TCGA-AD-6895-01 1 155167294 155167294 G C THBS3 Missense_Mutation p.T820R 0.29 deleterious(0) possibly_damaging(0.821) TCGA-AD-6895-01 1 155224446 155224446 A T FAM189B Missense_Mutation p.S75T 0.23 tolerated(0.2) probably_damaging(0.989) TCGA-AD-6895-01 1 155236617 155236617 G A CLK2 Silent p.G246G 0.25 TCGA-AD-6895-01 1 155257029 155257029 T A HCN3 Missense_Mutation p.Y515N 0.31 deleterious(0) probably_damaging(0.986) TCGA-AD-6895-01 1 156215649 156215649 G A PAQR6 5'UTR 0.28 TCGA-AD-6895-01 1 156639075 156639075 G A NES 3'UTR 0.36 TCGA-AD-6895-01 1 156819193 156819193 G A INSRR Missense_Mutation p.A430V 0.22 tolerated(0.14) benign(0.328) TCGA-AD-6895-01 1 156883285 156883285 C T PEAR1 Missense_Mutation p.R872W 0.23 tolerated(0.08) benign(0.004) TCGA-AD-6895-01 1 1573205 1573207 CTC - CDK11B In_Frame_Del p.E464del 0.19 TCGA-AD-6895-01 1 157508905 157508905 C T FCRL5 Missense_Mutation p.R458H 0.37 tolerated(0.09) possibly_damaging(0.46) TCGA-AD-6895-01 1 158725146 158725146 T C OR6K6 Missense_Mutation p.F181L 0.28 tolerated(0.24) benign(0.174) TCGA-AD-6895-01 1 158736283 158736283 T C OR6N1 Missense_Mutation p.S64G 0.19 tolerated(0.34) benign(0.016) TCGA-AD-6895-01 1 15905397 15905397 C - AGMAT Frame_Shift_Del p.G226Afs*19 0.27 TCGA-AD-6895-01 1 160340612 160340612 G A NHLH1 Missense_Mutation p.G31S 0.47 tolerated(0.67) possibly_damaging(0.855) TCGA-AD-6895-01 1 161496635 161496635 T A HSPA6 3'UTR 0.26 TCGA-AD-6895-01 1 162482303 162482303 G A UHMK1 Missense_Mutation p.D288N 0.24 tolerated(0.3) benign(0.025) TCGA-AD-6895-01 1 1663894 1663894 T C SLC35E2 Nonstop_Mutation p.*267Wext*47 0.24 TCGA-AD-6895-01 1 167023549 167023549 G A GPA33 3'UTR 0.34 TCGA-AD-6895-01 1 167798602 167798602 A G ADCY10 Missense_Mutation p.I1218T 0.09 deleterious(0.02) benign(0.117) TCGA-AD-6895-01 1 167935952 167935952 G A DCAF6 Missense_Mutation p.S82N 0.20 tolerated(0.67) probably_damaging(0.916) TCGA-AD-6895-01 1 169439227 169439227 G A SLC19A2 Silent p.G335G 0.26 TCGA-AD-6895-01 1 169762037 169762038 - A METTL18 Frame_Shift_Ins p.S267Ffs*3 0.10 TCGA-AD-6895-01 1 171510454 171510454 A C PRRC2C Missense_Mutation p.L1281F 0.27 unknown(0) TCGA-AD-6895-01 1 171546716 171546716 C T PRRC2C Missense_Mutation p.P2365S 0.32 possibly_damaging(0.519) TCGA-AD-6895-01 1 174979137 174979137 C T CACYBP Silent p.D203D 0.29 TCGA-AD-6895-01 1 176564373 176564373 G A PAPPA2 Missense_Mutation p.E545K 0.37 tolerated(0.08) benign(0.169) TCGA-AD-6895-01 1 179081509 179081509 C A ABL2 Missense_Mutation p.R529M 0.34 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 1 179089402 179089402 G A ABL2 Missense_Mutation p.T323I 0.24 deleterious(0.01) benign(0.11) TCGA-AD-6895-01 1 179631287 179631287 G A TDRD5 Missense_Mutation p.D791N 0.42 deleterious(0.04) possibly_damaging(0.697) TCGA-AD-6895-01 1 182025982 182025982 G A ZNF648 Silent p.G388G 0.40 TCGA-AD-6895-01 1 182554909 182554909 C - RNASEL Frame_Shift_Del p.A345Qfs*3 0.21 TCGA-AD-6895-01 1 185269143 185269143 G A IVNS1ABP Missense_Mutation p.P497S 0.21 tolerated(0.41) benign(0.054) TCGA-AD-6895-01 1 185953328 185953328 C T HMCN1 Missense_Mutation p.R940C 0.30 probably_damaging(0.999) TCGA-AD-6895-01 1 186120369 186120369 T C HMCN1 Silent p.N4882N 0.30 TCGA-AD-6895-01 1 186649396 186649396 G A PTGS2 Silent p.C9C 0.16 TCGA-AD-6895-01 1 19407892 19407892 G T UBR4 Missense_Mutation p.L5062M 0.21 probably_damaging(0.992) TCGA-AD-6895-01 1 19484347 19484347 G A UBR4 Missense_Mutation p.R1908C 0.09 benign(0.215) TCGA-AD-6895-01 1 1956964 1956964 C T GABRD Missense_Mutation p.T86I 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 1 197108910 197108910 T - ASPM Frame_Shift_Del p.K671Nfs*3 0.17 TCGA-AD-6895-01 1 197160890 197160892 CTT - ZBTB41 In_Frame_Del p.K420del 0.26 TCGA-AD-6895-01 1 198723415 198723415 C T PTPRC Missense_Mutation p.T1176M 0.30 deleterious(0) probably_damaging(0.988) TCGA-AD-6895-01 1 19992655 19992655 C T HTR6 Missense_Mutation p.R137C 0.29 deleterious(0) possibly_damaging(0.901) TCGA-AD-6895-01 1 200635390 200635390 G T DDX59 Missense_Mutation p.S160Y 0.23 tolerated(1) benign(0.001) TCGA-AD-6895-01 1 200843191 200843191 C T GPR25 Silent p.D342D 0.38 TCGA-AD-6895-01 1 201687680 201687680 G A NAV1 Silent p.G341G 0.26 TCGA-AD-6895-01 1 201749585 201749585 C T NAV1 Silent p.S421S 0.25 TCGA-AD-6895-01 1 201934574 201934574 C T TIMM17A Silent p.A111A 0.35 TCGA-AD-6895-01 1 202287284 202287284 T C LGR6 Missense_Mutation p.L618P 0.33 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 1 20234277 20234277 A G OTUD3 3'UTR 0.33 TCGA-AD-6895-01 1 203053060 203053060 G A MYOG Missense_Mutation p.P218L 0.27 tolerated(0.32) benign(0.036) TCGA-AD-6895-01 1 203097966 203097966 C T ADORA1 5'UTR 0.28 TCGA-AD-6895-01 1 204588856 204588856 G A LRRN2 Silent p.L89L 0.33 TCGA-AD-6895-01 1 205350971 205350971 C T LEMD1 Missense_Mutation p.A121T 0.31 tolerated(0.27) possibly_damaging(0.483) TCGA-AD-6895-01 1 206634731 206634731 C - SRGAP2 Frame_Shift_Del p.P976Hfs*13 0.09 TCGA-AD-6895-01 1 207135615 207135615 C T FCAMR Missense_Mutation p.G199S 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-AD-6895-01 1 207236530 207236530 C T PFKFB2 Silent p.L117L 0.26 TCGA-AD-6895-01 1 207679347 207679347 C T CR1 Missense_Mutation p.R74C 0.33 deleterious(0) probably_damaging(0.982) TCGA-AD-6895-01 1 207975842 207975842 C A C1orf132 RNA 0.25 TCGA-AD-6895-01 1 20879562 20879562 G A FAM43B Silent p.L32L 0.15 TCGA-AD-6895-01 1 20976973 20976973 G - PINK1 Frame_Shift_Del p.G513Vfs*5 0.23 TCGA-AD-6895-01 1 21011457 21011457 G A KIF17 Silent p.G692G 0.23 TCGA-AD-6895-01 1 210273496 210273496 C T SYT14 Missense_Mutation p.T330I 0.08 tolerated(0.06) benign(0.146) TCGA-AD-6895-01 1 211276869 211276869 A G KCNH1 Silent p.N93N 0.28 TCGA-AD-6895-01 1 211449606 211449606 G A RCOR3 Missense_Mutation p.G121D 0.23 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 1 211652493 211652493 C T RD3 Missense_Mutation p.R158H 0.29 deleterious(0) probably_damaging(0.983) TCGA-AD-6895-01 1 212119984 212119984 A T INTS7 Missense_Mutation p.Y794N 0.28 deleterious(0) probably_damaging(0.996) TCGA-AD-6895-01 1 212156110 212156110 A T INTS7 Nonsense_Mutation p.L347* 0.25 TCGA-AD-6895-01 1 2124344 2124344 T C C1orf86 Intron 0.35 TCGA-AD-6895-01 1 212534125 212534125 C G PPP2R5A 3'UTR 0.25 TCGA-AD-6895-01 1 212860204 212860204 G A BATF3 Silent p.L105L 0.28 TCGA-AD-6895-01 1 213403855 213403855 G A RPS6KC1 Missense_Mutation p.D354N 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-AD-6895-01 1 216420349 216420349 T C USH2A Missense_Mutation p.D796G 0.09 benign(0.02) TCGA-AD-6895-01 1 216591893 216591893 C T USH2A Missense_Mutation p.R205K 0.20 possibly_damaging(0.528) TCGA-AD-6895-01 1 216850645 216850645 G A ESRRG Missense_Mutation p.P87L 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-AD-6895-01 1 220174484 220174484 T - EPRS Frame_Shift_Del p.N726Mfs*15 0.24 TCGA-AD-6895-01 1 22078013 22078013 G A USP48 Missense_Mutation p.S254L 0.27 tolerated(0.06) benign(0.017) TCGA-AD-6895-01 1 222837428 222837428 G A MIA3 Missense_Mutation p.R1784Q 0.28 deleterious(0.04) probably_damaging(0.989) TCGA-AD-6895-01 1 226076647 226076647 C T LEFTY1 Silent p.V40V 0.30 TCGA-AD-6895-01 1 227076694 227076694 T A PSEN2 Missense_Mutation p.I244N 0.25 deleterious(0) probably_damaging(0.992) TCGA-AD-6895-01 1 227171749 227171749 G A ADCK3 Intron 0.28 TCGA-AD-6895-01 1 228399615 228399615 A T OBSCN Missense_Mutation p.E44V 0.30 probably_damaging(0.999) TCGA-AD-6895-01 1 228456470 228456470 G - OBSCN Frame_Shift_Del p.G1886Vfs*44 0.30 TCGA-AD-6895-01 1 228497242 228497242 G A OBSCN Missense_Mutation p.A5289T 0.22 probably_damaging(0.999) TCGA-AD-6895-01 1 228554730 228554730 C T OBSCN Silent p.C7451C 0.35 TCGA-AD-6895-01 1 228556472 228556472 G A OBSCN Missense_Mutation p.C7563Y 0.27 probably_damaging(0.992) TCGA-AD-6895-01 1 228564498 228564498 T A OBSCN Silent p.S8611S 0.23 TCGA-AD-6895-01 1 228588766 228588766 G A TRIM11 Missense_Mutation p.R212W 0.30 deleterious(0) possibly_damaging(0.677) TCGA-AD-6895-01 1 229593969 229593969 C G NUP133 Missense_Mutation p.L973F 0.32 deleterious(0) probably_damaging(0.992) TCGA-AD-6895-01 1 230410294 230410294 A - GALNT2 Frame_Shift_Del p.N516Mfs*16 0.18 TCGA-AD-6895-01 1 230914820 230914820 C T CAPN9 Missense_Mutation p.T352M 0.32 deleterious(0.03) benign(0.065) TCGA-AD-6895-01 1 231298860 231298860 C T TRIM67 Missense_Mutation p.L49F 0.40 tolerated(0.69) benign(0.202) TCGA-AD-6895-01 1 231472815 231472815 C T EXOC8 Missense_Mutation p.R226H 0.12 deleterious(0.01) possibly_damaging(0.676) TCGA-AD-6895-01 1 2316483 2316483 G A MORN1 Silent p.G157G 0.32 TCGA-AD-6895-01 1 232942557 232942557 G - MAP10 Frame_Shift_Del p.G598Dfs*6 0.24 TCGA-AD-6895-01 1 2340069 2340069 G A PEX10 Missense_Mutation p.A141V 0.35 tolerated(1) benign(0.005) TCGA-AD-6895-01 1 234509555 234509555 G A COA6 Missense_Mutation p.G31S 0.36 tolerated_low_confidence(0.38) benign(0.129) TCGA-AD-6895-01 1 235345255 235345255 A G ARID4B Silent p.D993D 0.29 TCGA-AD-6895-01 1 235345425 235345425 T A ARID4B Nonsense_Mutation p.K937* 0.34 TCGA-AD-6895-01 1 235383729 235383729 T - ARID4B Frame_Shift_Del p.N432Mfs*8 0.19 TCGA-AD-6895-01 1 235872545 235872545 G A LYST Missense_Mutation p.A3330V 0.08 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 1 235884060 235884060 C T LYST Missense_Mutation p.G3154D 0.23 deleterious(0) probably_damaging(0.924) TCGA-AD-6895-01 1 236201423 236201423 G A NID1 Silent p.G422G 0.19 TCGA-AD-6895-01 1 23637444 23637444 C T HNRNPR Missense_Mutation p.D472N 0.24 tolerated(0.44) unknown(0) TCGA-AD-6895-01 1 23637477 23637477 A T HNRNPR Missense_Mutation p.Y461N 0.20 tolerated(0.2) unknown(0) TCGA-AD-6895-01 1 23637487 23637487 C T HNRNPR Silent p.G457G 0.21 TCGA-AD-6895-01 1 236631572 236631572 T A EDARADD Silent p.L87L 0.37 TCGA-AD-6895-01 1 240071264 240071264 G A CHRM3 Silent p.T171T 0.28 TCGA-AD-6895-01 1 240975295 240975295 G A RGS7 Silent p.D335D 0.19 TCGA-AD-6895-01 1 24122403 24122403 C T GALE 3'UTR 0.46 TCGA-AD-6895-01 1 241676974 241676974 C T FH Missense_Mutation p.A103T 0.08 deleterious(0.02) benign(0.314) TCGA-AD-6895-01 1 24460771 24460771 A T IL22RA1 Missense_Mutation p.L154Q 0.23 tolerated(0.17) benign(0.141) TCGA-AD-6895-01 1 24768664 24768664 C T NIPAL3 Silent p.Y94Y 0.22 TCGA-AD-6895-01 1 247712471 247712471 A C GCSAML 5'UTR 0.27 TCGA-AD-6895-01 1 24776067 24776067 G A NIPAL3 Missense_Mutation p.G164D 0.21 deleterious(0) probably_damaging(0.958) TCGA-AD-6895-01 1 248129158 248129158 A T OR2AK2 Silent p.T175T 0.30 TCGA-AD-6895-01 1 248202217 248202217 C A OR2L2 Silent p.S216S 0.33 TCGA-AD-6895-01 1 248343817 248343817 T C OR2M2 Missense_Mutation p.F177S 0.31 deleterious(0.02) probably_damaging(0.913) TCGA-AD-6895-01 1 248685329 248685329 C T OR2G6 Missense_Mutation p.R128W 0.25 deleterious(0.02) benign(0.028) TCGA-AD-6895-01 1 248845151 248845151 G C OR14I1 Missense_Mutation p.S152C 0.11 deleterious(0.01) benign(0.021) TCGA-AD-6895-01 1 249149986 249149986 G A ZNF692 Silent p.V278V 0.27 TCGA-AD-6895-01 1 24995729 24995729 C - SRRM1 Frame_Shift_Del p.P620Lfs*114 0.30 TCGA-AD-6895-01 1 26370908 26370908 A G SLC30A2 Missense_Mutation p.V100A 0.22 deleterious(0) benign(0.157) TCGA-AD-6895-01 1 26514778 26514778 C - CNKSR1 Frame_Shift_Del p.P505Hfs*58 0.28 TCGA-AD-6895-01 1 26524847 26524847 C T CATSPER4 Missense_Mutation p.A250V 0.25 deleterious(0) probably_damaging(0.974) TCGA-AD-6895-01 1 26900923 26900923 T - RPS6KA1 3'Flank 0.32 TCGA-AD-6895-01 1 27106918 27106918 G A ARID1A Missense_Mutation p.G2177R 0.33 probably_damaging(0.997) TCGA-AD-6895-01 1 27699636 27699637 - C FCN3 Frame_Shift_Ins p.G129Rfs*32 0.29 TCGA-AD-6895-01 1 27720452 27720452 A T GPR3 Silent p.S50S 0.30 TCGA-AD-6895-01 1 27720998 27720998 C T GPR3 Silent p.H232H 0.23 TCGA-AD-6895-01 1 27721910 27721910 A G GPR3 3'UTR 0.25 TCGA-AD-6895-01 1 27877959 27877959 G A AHDC1 Missense_Mutation p.T223M 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.897) TCGA-AD-6895-01 1 28600589 28600589 T A SESN2 Missense_Mutation p.C314S 0.52 tolerated(0.41) possibly_damaging(0.725) TCGA-AD-6895-01 1 29189622 29189622 G A OPRD1 Missense_Mutation p.V316M 0.26 deleterious(0.01) benign(0.097) TCGA-AD-6895-01 1 2939250 2939250 C - ACTRT2 Frame_Shift_Del p.D336Tfs*16 0.21 TCGA-AD-6895-01 1 32052494 32052494 G A TINAGL1 Missense_Mutation p.V440M 0.41 deleterious(0.01) possibly_damaging(0.482) TCGA-AD-6895-01 1 32193614 32193614 G - BAI2 Intron 0.36 TCGA-AD-6895-01 1 32193802 32193802 C T BAI2 Missense_Mutation p.R1499H 0.29 deleterious(0.02) benign(0.018) TCGA-AD-6895-01 1 32221789 32221789 C T BAI2 Missense_Mutation p.G217S 0.45 deleterious(0.03) benign(0.34) TCGA-AD-6895-01 1 32628888 32628888 G A KPNA6 Missense_Mutation p.V322I 0.24 deleterious(0) possibly_damaging(0.891) TCGA-AD-6895-01 1 32671458 32671458 T C IQCC Missense_Mutation p.V59A 0.24 tolerated_low_confidence(0.17) unknown(0) TCGA-AD-6895-01 1 33235610 33235610 C T KIAA1522 Missense_Mutation p.A277V 0.30 tolerated(0.15) unknown(0) TCGA-AD-6895-01 1 33236507 33236507 G A KIAA1522 Missense_Mutation p.R576Q 0.17 deleterious(0) unknown(0) TCGA-AD-6895-01 1 33292050 33292050 C A S100PBP Missense_Mutation p.P117H 0.30 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 1 33333823 33333823 C T FNDC5 Missense_Mutation p.R51H 0.26 deleterious(0.02) possibly_damaging(0.563) TCGA-AD-6895-01 1 33361163 33361163 C T TMEM54 Missense_Mutation p.R151H 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 1 33560207 33560207 G A ADC Missense_Mutation p.A216T 0.41 deleterious(0.02) probably_damaging(1) TCGA-AD-6895-01 1 3386005 3386005 C T ARHGEF16 Silent p.F290F 0.20 TCGA-AD-6895-01 1 34090727 34090727 C A CSMD2 Missense_Mutation p.Q1768H 0.21 tolerated(0.4) benign(0.292) TCGA-AD-6895-01 1 35227884 35227884 C T GJB4 3'UTR 0.22 TCGA-AD-6895-01 1 35260556 35260556 G A GJA4 Missense_Mutation p.A248T 0.33 tolerated(0.37) benign(0.002) TCGA-AD-6895-01 1 35351697 35351697 C T DLGAP3 Missense_Mutation p.A526T 0.28 tolerated(0.91) benign(0.005) TCGA-AD-6895-01 1 35906542 35906542 G A KIAA0319L Intron 0.29 TCGA-AD-6895-01 1 3645975 3645975 G T TP73 Missense_Mutation p.D387Y 0.34 deleterious(0) probably_damaging(0.926) TCGA-AD-6895-01 1 36553833 36553833 A C TEKT2 3'UTR 0.26 TCGA-AD-6895-01 1 36563293 36563293 G A COL8A2 Silent p.A663A 0.46 TCGA-AD-6895-01 1 36564110 36564110 C T COL8A2 Missense_Mutation p.G391D 0.25 deleterious(0) unknown(0) TCGA-AD-6895-01 1 3662693 3662693 G A TP73-AS1 RNA 0.27 TCGA-AD-6895-01 1 36889003 36889003 C T OSCP1 Missense_Mutation p.G194E 0.10 deleterious(0) probably_damaging(0.991) TCGA-AD-6895-01 1 3712568 3712568 A T LRRC47 Missense_Mutation p.L158H 0.17 deleterious(0) probably_damaging(0.99) TCGA-AD-6895-01 1 3800430 3800430 A - DFFB 3'UTR 0.17 TCGA-AD-6895-01 1 38032543 38032543 G A GNL2 Silent p.N703N 0.25 TCGA-AD-6895-01 1 38188764 38188764 C T EPHA10 Missense_Mutation p.A637T 0.30 tolerated(0.19) benign(0.033) TCGA-AD-6895-01 1 38304394 38304394 T - MTF1 Frame_Shift_Del p.T228Rfs*19 0.13 TCGA-AD-6895-01 1 39305164 39305164 G A RRAGC 3'UTR 0.32 TCGA-AD-6895-01 1 39782097 39782097 C G MACF1 Missense_Mutation p.Q1167E 0.30 benign(0.001) TCGA-AD-6895-01 1 39853900 39853900 G A MACF1 Missense_Mutation p.R3067Q 0.25 probably_damaging(0.999) TCGA-AD-6895-01 1 39888476 39888476 G A MACF1 Silent p.L3289L 0.19 TCGA-AD-6895-01 1 40149717 40149717 C T HPCAL4 Silent p.S90S 0.30 TCGA-AD-6895-01 1 40240562 40240562 G A BMP8B Silent p.L161L 0.19 TCGA-AD-6895-01 1 40733542 40733542 G A ZMPSTE24 Missense_Mutation p.E119K 0.33 deleterious(0) probably_damaging(0.917) TCGA-AD-6895-01 1 40922640 40922640 A G ZFP69B Silent p.V79V 0.33 TCGA-AD-6895-01 1 42620455 42620455 C T GUCA2B Silent p.A65A 0.38 TCGA-AD-6895-01 1 42620461 42620461 C A GUCA2B Nonsense_Mutation p.C67* 0.36 TCGA-AD-6895-01 1 42898932 42898932 C T ZMYND12 Missense_Mutation p.R286H 0.15 tolerated(0.09) benign(0.003) TCGA-AD-6895-01 1 43392681 43392681 G T SLC2A1 3'UTR 0.25 TCGA-AD-6895-01 1 43893029 43893029 G - SZT2 Frame_Shift_Del p.A1115Lfs*4 0.20 TCGA-AD-6895-01 1 44063555 44063555 C T PTPRF Silent p.D650D 0.48 TCGA-AD-6895-01 1 44156684 44156684 G A KDM4A Missense_Mutation p.V736I 0.31 tolerated(1) benign(0.003) TCGA-AD-6895-01 1 44466706 44466706 G T SLC6A9 Missense_Mutation p.L526M 0.40 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 1 44684319 44684319 C T DMAP1 Silent p.N204N 0.24 TCGA-AD-6895-01 1 44818550 44818550 G A ERI3 Silent p.A61A 0.21 TCGA-AD-6895-01 1 45227651 45227651 G A KIF2C Missense_Mutation p.D583N 0.23 tolerated(0.36) probably_damaging(0.914) TCGA-AD-6895-01 1 45471734 45471734 C T HECTD3 Missense_Mutation p.D594N 0.33 deleterious(0.01) possibly_damaging(0.776) TCGA-AD-6895-01 1 46733187 46733187 C T RAD54L Silent p.N316N 0.31 TCGA-AD-6895-01 1 46871416 46871416 C A FAAH Silent p.P245P 0.20 TCGA-AD-6895-01 1 47101586 47101586 A G ATPAF1 Silent p.D306D 0.37 TCGA-AD-6895-01 1 47571912 47571912 G A CYP4Z1 Missense_Mutation p.D394N 0.30 deleterious(0) probably_damaging(0.945) TCGA-AD-6895-01 1 47611806 47611806 C T CYP4A22 Missense_Mutation p.P449S 0.23 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 1 47840867 47840867 A G CMPK1 Splice_Site p.X183_splice 0.29 TCGA-AD-6895-01 1 51826993 51826993 A T EPS15 Missense_Mutation p.D798E 0.25 tolerated(0.22) benign(0.009) TCGA-AD-6895-01 1 54370373 54370373 T C DIO1 Silent p.C124C 0.26 TCGA-AD-6895-01 1 55085577 55085577 G A FAM151A Silent p.H74H 0.26 TCGA-AD-6895-01 1 55096499 55096499 C T ACOT11 Silent p.S574S 0.29 TCGA-AD-6895-01 1 55279545 55279545 A G C1orf177 Missense_Mutation p.H274R 0.23 tolerated(1) benign(0) TCGA-AD-6895-01 1 5993346 5993346 A G NPHP4 Missense_Mutation p.M388T 0.20 tolerated(0.4) benign(0.004) TCGA-AD-6895-01 1 6160042 6160042 G A KCNAB2 3'UTR 0.36 TCGA-AD-6895-01 1 63003606 63003606 G C DOCK7 Missense_Mutation p.P1112A 0.09 tolerated(0.36) benign(0.016) TCGA-AD-6895-01 1 6355022 6355022 A T ACOT7 Missense_Mutation p.M254K 0.29 deleterious(0) probably_damaging(0.955) TCGA-AD-6895-01 1 63789107 63789107 G A FOXD3 Silent p.S126S 0.22 TCGA-AD-6895-01 1 63789297 63789297 C T FOXD3 Missense_Mutation p.R190C 0.34 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 1 64120069 64120069 G A PGM1 Missense_Mutation p.G529R 0.29 tolerated(0.05) probably_damaging(0.989) TCGA-AD-6895-01 1 65323452 65323452 C T JAK1 Missense_Mutation p.A449T 0.24 tolerated(0.07) probably_damaging(0.95) TCGA-AD-6895-01 1 6653586 6653586 G A KLHL21 Missense_Mutation p.R545W 0.39 deleterious(0.01) possibly_damaging(0.828) TCGA-AD-6895-01 1 67558973 67558973 T C C1orf141 Silent p.L306L 0.27 TCGA-AD-6895-01 1 72163743 72163743 C A NEGR1 Silent p.A205A 0.28 TCGA-AD-6895-01 1 75217984 75217984 G A TYW3 Silent p.R145R 0.31 TCGA-AD-6895-01 1 78189059 78189059 T A USP33 Missense_Mutation p.D480V 0.30 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 1 78340701 78340701 T A FAM73A Missense_Mutation p.S617R 0.24 tolerated(0.25) benign(0.019) TCGA-AD-6895-01 1 78340884 78340884 T A FAM73A 3'UTR 0.43 TCGA-AD-6895-01 1 78340894 78340894 T C FAM73A 3'UTR 0.42 TCGA-AD-6895-01 1 8073432 8073432 T A ERRFI1 Missense_Mutation p.K409N 0.31 deleterious(0) possibly_damaging(0.451) TCGA-AD-6895-01 1 8390540 8390540 C T SLC45A1 Silent p.H329H 0.38 TCGA-AD-6895-01 1 84412924 84412924 C T TTLL7 Missense_Mutation p.R130Q 0.30 deleterious(0.01) benign(0.426) TCGA-AD-6895-01 1 84944943 84944943 C A RPF1 5'Flank 0.28 TCGA-AD-6895-01 1 84981989 84981989 A - SPATA1 RNA 0.24 TCGA-AD-6895-01 1 84988152 84988152 T A SPATA1 RNA 0.23 TCGA-AD-6895-01 1 85020800 85020800 C T CTBS Missense_Mutation p.R347H 0.30 deleterious(0.05) benign(0.002) TCGA-AD-6895-01 1 86590585 86590585 T C COL24A1 Silent p.L478L 0.29 TCGA-AD-6895-01 1 86590592 86590592 T A COL24A1 Missense_Mutation p.E476V 0.32 tolerated(0.15) probably_damaging(0.915) TCGA-AD-6895-01 1 86591677 86591677 T A COL24A1 Silent p.S114S 0.28 TCGA-AD-6895-01 1 86959135 86959135 C T CLCA1 Silent p.T511T 0.42 TCGA-AD-6895-01 1 87045800 87045800 C T CLCA4 Silent p.A844A 0.26 TCGA-AD-6895-01 1 87810636 87810636 T C LMO4 3'UTR 0.29 TCGA-AD-6895-01 1 9005967 9005967 C A CA6 Missense_Mutation p.L8M 0.30 tolerated(0.06) possibly_damaging(0.548) TCGA-AD-6895-01 1 909406 909406 C T PLEKHN1 Missense_Mutation p.P543L 0.15 tolerated(0.1) benign(0.025) TCGA-AD-6895-01 1 91180244 91180244 G A BARHL2 Missense_Mutation p.P232L 0.11 deleterious(0.05) unknown(0) TCGA-AD-6895-01 1 92182146 92182146 G A TGFBR3 Silent p.F562F 0.37 TCGA-AD-6895-01 1 92789302 92789302 C T RPAP2 Silent p.G275G 0.35 TCGA-AD-6895-01 1 95358034 95358034 A T SLC44A3 Silent p.G606G 0.27 TCGA-AD-6895-01 1 9775614 9775614 G A PIK3CD Missense_Mutation p.A53T 0.29 deleterious(0.01) probably_damaging(1) TCGA-AD-6895-01 20 11900419 11900419 T A BTBD3 Silent p.L157L 0.31 TCGA-AD-6895-01 20 14306461 14306461 T C FLRT3 Silent p.A564A 0.27 TCGA-AD-6895-01 20 1460596 1460596 G A SIRPB2 Missense_Mutation p.T67I 0.27 tolerated(0.57) benign(0.002) TCGA-AD-6895-01 20 16030536 16030536 G A MACROD2 3'UTR 0.35 TCGA-AD-6895-01 20 17434396 17434396 G A PCSK2 Missense_Mutation p.G299S 0.43 deleterious(0.01) probably_damaging(1) TCGA-AD-6895-01 20 17587834 17587834 A T DSTN 3'UTR 0.30 TCGA-AD-6895-01 20 18446006 18446006 C T DZANK1 5'UTR 0.54 TCGA-AD-6895-01 20 21492998 21492998 G A NKX2-2 Nonsense_Mutation p.R129* 0.40 TCGA-AD-6895-01 20 23028346 23028346 T C THBD 3'UTR 0.31 TCGA-AD-6895-01 20 2443676 2443676 A G SNRPB Intron 0.25 TCGA-AD-6895-01 20 25667131 25667131 C T ZNF337 5'UTR 0.38 TCGA-AD-6895-01 20 2641573 2641573 G A IDH3B Missense_Mutation p.S127F 0.17 deleterious(0) probably_damaging(0.942) TCGA-AD-6895-01 20 29628260 29628260 T C FRG1B Missense_Mutation p.F88L 0.05 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 20 3016450 3016450 G A PTPRA Silent p.R687R 0.14 TCGA-AD-6895-01 20 30371722 30371722 G T TPX2 Missense_Mutation p.V471L 0.24 deleterious(0.01) probably_damaging(0.97) TCGA-AD-6895-01 20 309541 309541 A G SOX12 3'UTR 0.23 TCGA-AD-6895-01 20 31172534 31172534 G A RP11-410N8.4 5'Flank 0.44 TCGA-AD-6895-01 20 32358031 32358031 G A ZNF341 Missense_Mutation p.G512S 0.39 deleterious(0) possibly_damaging(0.586) TCGA-AD-6895-01 20 32663706 32663706 C T RALY Missense_Mutation p.S135L 0.30 tolerated(0.17) possibly_damaging(0.579) TCGA-AD-6895-01 20 32878667 32878667 G A AHCY Silent p.A212A 0.38 TCGA-AD-6895-01 20 33345741 33345741 C T NCOA6 Silent p.Q270Q 0.34 TCGA-AD-6895-01 20 33345744 33345744 C T NCOA6 Silent p.Q269Q 0.37 TCGA-AD-6895-01 20 33585100 33585100 C T MYH7B Missense_Mutation p.A1177V 0.24 benign(0.228) TCGA-AD-6895-01 20 33588395 33588395 A T MYH7B Missense_Mutation p.E1736V 0.28 probably_damaging(0.999) TCGA-AD-6895-01 20 34055280 34055280 G A CEP250 Missense_Mutation p.A251T 0.37 benign(0.071) TCGA-AD-6895-01 20 35521570 35521570 A T TLDC2 3'UTR 0.24 TCGA-AD-6895-01 20 36030858 36030858 C T SRC Silent p.Y379Y 0.36 TCGA-AD-6895-01 20 3650222 3650222 G T ADAM33 Missense_Mutation p.P768H 0.33 deleterious(0.03) possibly_damaging(0.838) TCGA-AD-6895-01 20 36854123 36854123 C T KIAA1755 Missense_Mutation p.A705T 0.35 tolerated(0.59) benign(0.005) TCGA-AD-6895-01 20 37187090 37187090 C T RALGAPB Silent p.N1175N 0.21 TCGA-AD-6895-01 20 37209889 37209889 G T ADIG 5'UTR 0.09 TCGA-AD-6895-01 20 43851292 43851292 G A SEMG2 Missense_Mutation p.G340D 0.40 deleterious(0.04) possibly_damaging(0.871) TCGA-AD-6895-01 20 43922443 43922443 C T MATN4 Silent p.L570L 0.21 TCGA-AD-6895-01 20 43945347 43945347 C T RBPJL Silent p.C434C 0.30 TCGA-AD-6895-01 20 44528172 44528172 T C PLTP Missense_Mutation p.T430A 0.20 tolerated(0.07) possibly_damaging(0.524) TCGA-AD-6895-01 20 45131125 45131125 T G ZNF334 Silent p.R285R 0.38 TCGA-AD-6895-01 20 45242314 45242314 C T SLC13A3 Silent p.T54T 0.40 TCGA-AD-6895-01 20 45354398 45354398 C A SLC2A10 Missense_Mutation p.F241L 0.31 tolerated(0.08) benign(0.032) TCGA-AD-6895-01 20 45853062 45853062 G A ZMYND8 Missense_Mutation p.A1009V 0.45 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 20 46331333 46331333 T - SULF2 Frame_Shift_Del p.N166Tfs*14 0.21 TCGA-AD-6895-01 20 47892380 47892380 T C ZNFX1 5'UTR 0.22 TCGA-AD-6895-01 20 50140568 50140568 G T NFATC2 Missense_Mutation p.P71Q 0.32 tolerated(0.11) possibly_damaging(0.474) TCGA-AD-6895-01 20 56807946 56807946 A G ANKRD60 5'Flank 0.22 TCGA-AD-6895-01 20 56885000 56885000 C T RAB22A 5'UTR 0.09 TCGA-AD-6895-01 20 57042263 57042263 G A APCDD1L Missense_Mutation p.R214W 0.41 tolerated(0.13) possibly_damaging(0.809) TCGA-AD-6895-01 20 57227133 57227133 T A STX16 Nonsense_Mutation p.L24* 0.22 TCGA-AD-6895-01 20 57829841 57829841 C T ZNF831 3'UTR 0.38 TCGA-AD-6895-01 20 58439263 58439263 C A SYCP2 3'UTR 0.23 TCGA-AD-6895-01 20 58521534 58521535 - A FAM217B 3'UTR 0.16 TCGA-AD-6895-01 20 5987963 5987963 G A CRLS1 Intron 0.24 TCGA-AD-6895-01 20 60470056 60470056 A G CDH4 Missense_Mutation p.T381A 0.33 tolerated(0.15) benign(0.007) TCGA-AD-6895-01 20 61473404 61473404 G T TCFL5 Missense_Mutation p.L476M 0.29 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-AD-6895-01 20 61950484 61950484 G A COL20A1 Missense_Mutation p.R913H 0.28 deleterious(0.04) probably_damaging(0.973) TCGA-AD-6895-01 20 62076679 62076679 G A KCNQ2 Silent p.F142F 0.26 TCGA-AD-6895-01 20 62221387 62221387 C T GMEB2 3'UTR 0.20 TCGA-AD-6895-01 20 62319037 62319037 C T RTEL1 Silent p.H489H 0.39 TCGA-AD-6895-01 20 62321395 62321395 T C RTEL1 Intron 0.33 TCGA-AD-6895-01 20 62321432 62321432 C - RTEL1 Intron 0.29 TCGA-AD-6895-01 20 62705623 62705623 G A RGS19 Silent p.Y112Y 0.33 TCGA-AD-6895-01 21 17250709 17250709 T C USP25 Missense_Mutation p.L1028S 0.23 deleterious(0) probably_damaging(0.99) TCGA-AD-6895-01 21 27113931 27113931 G T GABPA Nonsense_Mutation p.E8* 0.21 TCGA-AD-6895-01 21 30432906 30432906 T C CCT8 Missense_Mutation p.K509E 0.23 deleterious(0.02) possibly_damaging(0.867) TCGA-AD-6895-01 21 31992950 31992950 C T KRTAP20-4 5'UTR 0.27 TCGA-AD-6895-01 21 34060637 34060637 G A SYNJ1 Missense_Mutation p.A316V 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6895-01 21 34975784 34975784 G A CRYZL1 Missense_Mutation p.R131C 0.29 tolerated(0.17) benign(0.114) TCGA-AD-6895-01 21 35169726 35169726 C T ITSN1 Nonsense_Mutation p.Q666* 0.36 TCGA-AD-6895-01 21 37734510 37734510 C T MORC3 Missense_Mutation p.P479L 0.28 tolerated(0.38) benign(0.003) TCGA-AD-6895-01 21 38118162 38118162 G A SIM2 Intron 0.33 TCGA-AD-6895-01 21 39817371 39817371 G A ERG Silent p.V71V 0.31 TCGA-AD-6895-01 21 40194762 40194762 G A ETS2 Silent p.T453T 0.40 TCGA-AD-6895-01 21 40572234 40572234 G A BRWD1 Missense_Mutation p.S1555F 0.31 tolerated(0.13) benign(0.08) TCGA-AD-6895-01 21 41710210 41710210 G A DSCAM Missense_Mutation p.S534F 0.26 tolerated(0.1) possibly_damaging(0.617) TCGA-AD-6895-01 21 42647328 42647328 C T BACE2 Missense_Mutation p.S445F 0.27 deleterious(0.03) possibly_damaging(0.761) TCGA-AD-6895-01 21 42694869 42694869 C T FAM3B Silent p.F13F 0.18 TCGA-AD-6895-01 21 42813754 42813754 G - MX1 Frame_Shift_Del p.G282Afs*9 0.22 TCGA-AD-6895-01 21 42839674 42839674 T A TMPRSS2 Missense_Mutation p.Y522F 0.31 deleterious(0.02) probably_damaging(0.97) TCGA-AD-6895-01 21 43161868 43161868 G A RIPK4 Silent p.I495I 0.32 TCGA-AD-6895-01 21 43913132 43913132 G A RSPH1 Silent p.L38L 0.27 TCGA-AD-6895-01 21 44473932 44473932 C T CBS 3'UTR 0.41 TCGA-AD-6895-01 21 45220480 45220480 A G RRP1 Missense_Mutation p.Y325C 0.10 tolerated(0.16) benign(0.302) TCGA-AD-6895-01 21 45504093 45504093 C T TRAPPC10 Nonsense_Mutation p.Q777* 0.26 TCGA-AD-6895-01 21 45821766 45821766 G A TRPM2 Missense_Mutation p.E842K 0.22 deleterious(0) possibly_damaging(0.804) TCGA-AD-6895-01 21 45953660 45953660 C T TSPEAR Silent p.P150P 0.33 TCGA-AD-6895-01 21 45970824 45970824 C T KRTAP10-2 Missense_Mutation p.C173Y 0.31 deleterious(0.01) unknown(0) TCGA-AD-6895-01 21 46313370 46313370 C T ITGB2 Silent p.T391T 0.29 TCGA-AD-6895-01 21 46945835 46945835 C T SLC19A1 Missense_Mutation p.A397T 0.31 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 21 46951692 46951692 T G SLC19A1 Missense_Mutation p.Y187S 0.35 tolerated(0.1) benign(0.223) TCGA-AD-6895-01 21 46951849 46951849 C T SLC19A1 Missense_Mutation p.A135T 0.35 deleterious(0) probably_damaging(0.992) TCGA-AD-6895-01 21 47581896 47581896 G A SPATC1L Silent p.Y210Y 0.27 TCGA-AD-6895-01 21 47862474 47862474 G A PCNT Missense_Mutation p.A3230T 0.23 benign(0.003) TCGA-AD-6895-01 22 17082997 17082997 C G TPTEP1 RNA 0.27 TCGA-AD-6895-01 22 17590359 17590359 C A IL17RA Silent p.G750G 0.31 TCGA-AD-6895-01 22 19130246 19130246 C T DGCR14 Silent p.P99P 0.35 TCGA-AD-6895-01 22 20080432 20080432 T C DGCR8 Splice_Site p.X569_splice 0.15 TCGA-AD-6895-01 22 20130613 20130613 C T ZDHHC8 Missense_Mutation p.S487L 0.19 deleterious(0.02) benign(0.02) TCGA-AD-6895-01 22 20130977 20130977 C T ZDHHC8 Silent p.D608D 0.25 TCGA-AD-6895-01 22 20459932 20459932 C T RIMBP3 Missense_Mutation p.G457D 0.19 tolerated(0.2) benign(0.003) TCGA-AD-6895-01 22 20760248 20760248 T C ZNF74 Missense_Mutation p.C309R 0.10 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 22 21335385 21335385 C T AIFM3 3'UTR 0.35 TCGA-AD-6895-01 22 21947219 21947219 T A UBE2L3 Missense_Mutation p.L91M 0.30 deleterious(0.04) possibly_damaging(0.747) TCGA-AD-6895-01 22 21989362 21989362 C T CCDC116 Missense_Mutation p.P337L 0.33 deleterious(0) probably_damaging(0.988) TCGA-AD-6895-01 22 22049867 22049867 C A PPIL2 Intron 0.33 TCGA-AD-6895-01 22 24439481 24439481 A T CABIN1 Missense_Mutation p.N154I 0.15 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 22 24562838 24562838 C T CABIN1 Missense_Mutation p.R1747W 0.33 tolerated_low_confidence(0.21) benign(0) TCGA-AD-6895-01 22 24982087 24982087 G A FAM211B Missense_Mutation p.P239S 0.15 tolerated(0.05) probably_damaging(0.988) TCGA-AD-6895-01 22 26771575 26771575 G A SEZ6L Silent p.G954G 0.24 TCGA-AD-6895-01 22 28193341 28193341 T C MN1 Missense_Mutation p.D1064G 0.22 probably_damaging(0.998) TCGA-AD-6895-01 22 28195101 28195101 C T MN1 Missense_Mutation p.M477I 0.33 benign(0.004) TCGA-AD-6895-01 22 29521273 29521273 A G KREMEN1 Missense_Mutation p.Y167C 0.29 deleterious(0.05) probably_damaging(0.992) TCGA-AD-6895-01 22 30660108 30660108 G A OSM Missense_Mutation p.P175S 0.24 tolerated(0.66) benign(0.201) TCGA-AD-6895-01 22 31998602 31998602 C T SFI1 Missense_Mutation p.H546Y 0.37 deleterious(0.02) benign(0.009) TCGA-AD-6895-01 22 32198783 32198783 G A DEPDC5 Missense_Mutation p.R347H 0.24 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 22 32794006 32794006 T - RTCB Frame_Shift_Del p.M246Wfs*11 0.11 TCGA-AD-6895-01 22 36541544 36541544 G A APOL3 Silent p.F109F 0.41 TCGA-AD-6895-01 22 36688156 36688156 G A MYH9 Missense_Mutation p.A1407V 0.19 possibly_damaging(0.61) TCGA-AD-6895-01 22 36700126 36700126 C T MYH9 Missense_Mutation p.A769T 0.25 probably_damaging(0.998) TCGA-AD-6895-01 22 36960240 36960240 G T CACNG2 3'UTR 0.30 TCGA-AD-6895-01 22 37771136 37771136 A C ELFN2 Missense_Mutation p.F147V 0.18 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 22 38074613 38074613 C T LGALS1 Silent p.T71T 0.26 TCGA-AD-6895-01 22 38111856 38111856 G A TRIOBP Silent p.G181G 0.19 TCGA-AD-6895-01 22 38219412 38219412 A T GALR3 5'UTR 0.36 TCGA-AD-6895-01 22 38273846 38273846 T C EIF3L Missense_Mutation p.Y415H 0.21 tolerated(0.15) possibly_damaging(0.793) TCGA-AD-6895-01 22 38524341 38524341 G A PLA2G6 Missense_Mutation p.A428V 0.35 tolerated(0.27) benign(0.001) TCGA-AD-6895-01 22 39711402 39711402 G A RPL3 Silent p.I220I 0.28 TCGA-AD-6895-01 22 39760187 39760187 C T SYNGR1 Intron 0.12 TCGA-AD-6895-01 22 40800325 40800325 C T SGSM3 Nonsense_Mutation p.Q78* 0.16 TCGA-AD-6895-01 22 41631243 41631243 G A CHADL Missense_Mutation p.P723L 0.19 deleterious(0.04) benign(0.02) TCGA-AD-6895-01 22 41634878 41634878 C T CHADL Silent p.R66R 0.20 TCGA-AD-6895-01 22 42608229 42608229 C - TCF20 Frame_Shift_Del p.G1028Efs*6 0.10 TCGA-AD-6895-01 22 42610707 42610707 G A TCF20 Missense_Mutation p.A202V 0.14 benign(0.06) TCGA-AD-6895-01 22 44258121 44258121 C T SULT4A1 Missense_Mutation p.V48M 0.25 deleterious(0.01) possibly_damaging(0.847) TCGA-AD-6895-01 22 44282322 44282322 G A PNPLA5 Silent p.P270P 0.36 TCGA-AD-6895-01 22 44893594 44893594 C T LDOC1L 5'UTR 0.24 TCGA-AD-6895-01 22 45749999 45749999 G T SMC1B Missense_Mutation p.S1044R 0.35 deleterious(0.01) probably_damaging(0.978) TCGA-AD-6895-01 22 46509593 46509593 T A FLJ27365 3'UTR 0.21 TCGA-AD-6895-01 22 46806423 46806423 C - CELSR1 Frame_Shift_Del p.G1602Vfs*104 0.11 TCGA-AD-6895-01 22 46931180 46931180 A G CELSR1 Missense_Mutation p.F630L 0.33 tolerated(0.12) probably_damaging(0.999) TCGA-AD-6895-01 22 50470537 50470537 C T TTLL8 Missense_Mutation p.A445T 0.36 deleterious(0) probably_damaging(0.975) TCGA-AD-6895-01 22 50615972 50615972 G A PANX2 Silent p.V277V 0.27 TCGA-AD-6895-01 22 50660148 50660148 C - TUBGCP6 Frame_Shift_Del p.L881Cfs*77 0.19 TCGA-AD-6895-01 2 100019358 100019358 T C REV1 Silent p.K1126K 0.25 TCGA-AD-6895-01 2 10016087 10016087 C T TAF1B Missense_Mutation p.A216V 0.13 deleterious(0) probably_damaging(0.989) TCGA-AD-6895-01 2 100210301 100210301 G A AFF3 Missense_Mutation p.P633S 0.67 tolerated(0.19) benign(0.156) TCGA-AD-6895-01 2 10091870 10091870 G A GRHL1 5'UTR 0.33 TCGA-AD-6895-01 2 105858885 105858885 C T GPR45 Silent p.P190P 0.17 TCGA-AD-6895-01 2 105859058 105859058 G A GPR45 Missense_Mutation p.R248H 0.37 tolerated(0.55) possibly_damaging(0.553) TCGA-AD-6895-01 2 106498393 106498393 G A NCK2 Missense_Mutation p.R279H 0.29 tolerated(0.28) possibly_damaging(0.518) TCGA-AD-6895-01 2 106690438 106690438 G A C2orf40 Missense_Mutation p.R75Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-AD-6895-01 2 10717792 10717792 G A NOL10 Silent p.G639G 0.28 TCGA-AD-6895-01 2 108507212 108507212 G T RGPD4 3'UTR 0.23 TCGA-AD-6895-01 2 10929977 10929977 G A PDIA6 Silent p.G246G 0.15 TCGA-AD-6895-01 2 10937251 10937251 A G PDIA6 Missense_Mutation p.I101T 0.27 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 2 110015264 110015264 G A SH3RF3 Silent p.T388T 0.19 TCGA-AD-6895-01 2 110065927 110065927 C A SH3RF3 Missense_Mutation p.D710E 0.32 tolerated(0.64) benign(0.028) TCGA-AD-6895-01 2 110350642 110350642 C T SEPT10 Missense_Mutation p.D29N 0.29 tolerated(0.13) benign(0.03) TCGA-AD-6895-01 2 112813293 112813293 C T TMEM87B Missense_Mutation p.A42V 0.23 deleterious(0) possibly_damaging(0.801) TCGA-AD-6895-01 2 113082571 113082571 A G ZC3H6 Missense_Mutation p.Q628R 0.20 tolerated(0.08) benign(0.118) TCGA-AD-6895-01 2 113830191 113830191 C T IL1F10 5'UTR 0.38 TCGA-AD-6895-01 2 113953763 113953763 G A PSD4 Silent p.P755P 0.31 TCGA-AD-6895-01 2 119750788 119750788 C T MARCO Silent p.C447C 0.27 TCGA-AD-6895-01 2 120005381 120005381 C T STEAP3 Missense_Mutation p.R217C 0.24 deleterious(0.04) benign(0.034) TCGA-AD-6895-01 2 120194747 120194747 G A TMEM37 Missense_Mutation p.A102T 0.25 deleterious(0.02) probably_damaging(0.949) TCGA-AD-6895-01 2 120734602 120734602 G A PTPN4 Missense_Mutation p.E913K 0.07 tolerated(0.79) benign(0.001) TCGA-AD-6895-01 2 120734692 120734692 T C PTPN4 3'UTR 0.11 TCGA-AD-6895-01 2 125672722 125672722 C T CNTNAP5 3'UTR 0.46 TCGA-AD-6895-01 2 128399650 128399650 C T LIMS2 Missense_Mutation p.A236T 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-AD-6895-01 2 130951451 130951451 C - TUBA3E Frame_Shift_Del p.D322Tfs*57 0.22 TCGA-AD-6895-01 2 132273925 132273927 TCT - AC093838.4 RNA 0.32 TCGA-AD-6895-01 2 136393484 136393484 T A R3HDM1 Missense_Mutation p.H241Q 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-AD-6895-01 2 144381712 144381712 G T ARHGAP15 Silent p.L338L 0.19 TCGA-AD-6895-01 2 14774955 14774955 C T FAM84A Silent p.L284L 0.30 TCGA-AD-6895-01 2 14775633 14775633 C G AC011897.1 Missense_Mutation p.P103A 0.14 tolerated_low_confidence(0.3) unknown(0) TCGA-AD-6895-01 2 14775637 14775637 A T AC011897.1 Missense_Mutation p.D104V 0.15 tolerated_low_confidence(0.06) unknown(0) TCGA-AD-6895-01 2 149226935 149226935 C T MBD5 Missense_Mutation p.P475S 0.21 tolerated_low_confidence(0.16) possibly_damaging(0.803) TCGA-AD-6895-01 2 149633168 149633169 CT - KIF5C 5'UTR 0.43 TCGA-AD-6895-01 2 1497599 1497599 C T TPO Silent p.C598C 0.23 TCGA-AD-6895-01 2 152490296 152490296 C T NEB Missense_Mutation p.V3096M 0.23 possibly_damaging(0.738) TCGA-AD-6895-01 2 152955215 152955215 A G CACNB4 Intron 0.24 TCGA-AD-6895-01 2 155252622 155252622 C T GALNT13 Missense_Mutation p.R426C 0.32 deleterious(0) possibly_damaging(0.513) TCGA-AD-6895-01 2 155711297 155711297 T - KCNJ3 Frame_Shift_Del p.P329Lfs*2 0.22 TCGA-AD-6895-01 2 159490706 159490706 G T PKP4 Silent p.V489V 0.19 TCGA-AD-6895-01 2 160994126 160994126 G A ITGB6 Silent p.G493G 0.27 TCGA-AD-6895-01 2 161223794 161223794 T - RBMS1 Frame_Shift_Del p.T62Rfs*18 0.08 TCGA-AD-6895-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.28 TCGA-AD-6895-01 2 167060577 167060577 A G SCN9A Silent p.F1543F 0.23 TCGA-AD-6895-01 2 167129280 167129280 T C SCN9A Missense_Mutation p.R983G 0.36 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 2 168106361 168106361 A - XIRP2 Frame_Shift_Del p.N2822Ifs*6 0.27 TCGA-AD-6895-01 2 169869922 169869922 A - ABCB11 Frame_Shift_Del p.F83Lfs*4 0.22 TCGA-AD-6895-01 2 170003369 170003369 G A LRP2 Missense_Mutation p.P4231S 0.12 probably_damaging(1) TCGA-AD-6895-01 2 170025080 170025080 G A LRP2 Silent p.G3868G 0.24 TCGA-AD-6895-01 2 170033031 170033031 T C LRP2 Silent p.K3487K 0.11 TCGA-AD-6895-01 2 170081867 170081867 T A LRP2 Missense_Mutation p.I1831F 0.31 possibly_damaging(0.563) TCGA-AD-6895-01 2 176794923 176794923 A G KIAA1715 Silent p.S353S 0.12 TCGA-AD-6895-01 2 178977334 178977334 G A RBM45 Missense_Mutation p.D21N 0.30 deleterious(0) probably_damaging(0.925) TCGA-AD-6895-01 2 179248771 179248771 C T OSBPL6 Silent p.L652L 0.06 TCGA-AD-6895-01 2 179296937 179296937 A T PRKRA Missense_Mutation p.S277T 0.10 tolerated(0.06) possibly_damaging(0.831) TCGA-AD-6895-01 2 179358718 179358718 T G PLEKHA3 Splice_Site p.X150_splice 0.32 TCGA-AD-6895-01 2 179398941 179398941 T A TTN Missense_Mutation p.E34134V 0.33 TCGA-AD-6895-01 2 179439031 179439031 A G TTN Missense_Mutation p.L23943P 0.22 TCGA-AD-6895-01 2 179441920 179441920 C T TTN Missense_Mutation p.E23048K 0.27 TCGA-AD-6895-01 2 179456504 179456504 T C TTN Silent p.V20014V 0.30 TCGA-AD-6895-01 2 179600594 179600594 T A TTN Missense_Mutation p.Q4860L 0.27 TCGA-AD-6895-01 2 187694551 187694551 T G ZSWIM2 Missense_Mutation p.K333T 0.30 deleterious(0) probably_damaging(0.933) TCGA-AD-6895-01 2 190428520 190428520 G - SLC40A1 Frame_Shift_Del p.L398Wfs*55 0.17 TCGA-AD-6895-01 2 190592695 190592695 A T ANKAR Nonsense_Mutation p.K917* 0.26 TCGA-AD-6895-01 2 190618995 190618995 G A OSGEPL1 Missense_Mutation p.A229V 0.18 deleterious(0) probably_damaging(0.969) TCGA-AD-6895-01 2 191379344 191379344 G A TMEM194B Missense_Mutation p.A263V 0.26 tolerated(1) benign(0.002) TCGA-AD-6895-01 2 191524441 191524441 C - NAB1 Frame_Shift_Del p.A182Rfs*34 0.30 TCGA-AD-6895-01 2 191524668 191524668 T C NAB1 Missense_Mutation p.Y256H 0.26 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 2 197122568 197122568 G A HECW2 Missense_Mutation p.A1133V 0.35 tolerated(0.13) benign(0.075) TCGA-AD-6895-01 2 198338653 198338653 A - COQ10B 3'UTR 0.21 TCGA-AD-6895-01 2 201284141 201284141 G A SPATS2L Missense_Mutation p.E123K 0.25 deleterious(0.01) possibly_damaging(0.823) TCGA-AD-6895-01 2 202150015 202150015 C T CASP8 Nonsense_Mutation p.Q486* 0.42 TCGA-AD-6895-01 2 203162109 203162109 G A NOP58 Missense_Mutation p.R360Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 2 203383769 203383769 T A BMPR2 Nonsense_Mutation p.Y282* 0.27 TCGA-AD-6895-01 2 207174686 207174686 C A ZDBF2 Missense_Mutation p.P1812T 0.16 tolerated(0.55) benign(0) TCGA-AD-6895-01 2 208477900 208477900 C T METTL21A Missense_Mutation p.R176H 0.35 deleterious(0.03) possibly_damaging(0.751) TCGA-AD-6895-01 2 210654280 210654280 G A UNC80 Missense_Mutation p.S250N 0.13 benign(0) TCGA-AD-6895-01 2 210680060 210680060 G A UNC80 Missense_Mutation p.R427H 0.15 probably_damaging(0.928) TCGA-AD-6895-01 2 211070373 211070373 T - ACADL Frame_Shift_Del p.M251Wfs*3 0.17 TCGA-AD-6895-01 2 212530175 212530175 G A ERBB4 Missense_Mutation p.H582Y 0.23 deleterious(0) benign(0.125) TCGA-AD-6895-01 2 213886733 213886733 C A IKZF2 Missense_Mutation p.Q232H 0.19 tolerated(0.31) possibly_damaging(0.736) TCGA-AD-6895-01 2 215440420 215440420 C T VWC2L Missense_Mutation p.T182M 0.21 tolerated(0.09) possibly_damaging(0.738) TCGA-AD-6895-01 2 215645975 215645975 T - BARD1 Frame_Shift_Del p.K208Rfs*4 0.19 TCGA-AD-6895-01 2 219127982 219127982 G T GPBAR1 Missense_Mutation p.G179C 0.39 deleterious(0.02) probably_damaging(0.922) TCGA-AD-6895-01 2 219135242 219135242 G - PNKD 5'UTR 0.13 TCGA-AD-6895-01 2 219135295 219135296 - G PNKD Frame_Shift_Ins p.A15Gfs*17 0.25 TCGA-AD-6895-01 2 219875671 219875671 G C CCDC108 Silent p.V1335V 0.18 TCGA-AD-6895-01 2 219888911 219888911 C T CCDC108 Silent p.L807L 0.33 TCGA-AD-6895-01 2 220353301 220353301 C T SPEG Missense_Mutation p.A2647V 0.32 possibly_damaging(0.718) TCGA-AD-6895-01 2 220478597 220478597 T C STK11IP Silent p.C898C 0.44 TCGA-AD-6895-01 2 223168752 223168752 A G CCDC140 Missense_Mutation p.H44R 0.30 tolerated_low_confidence(0.4) benign(0.001) TCGA-AD-6895-01 2 223488424 223488424 A C FARSB Missense_Mutation p.L399R 0.29 tolerated(0.09) benign(0.025) TCGA-AD-6895-01 2 228148563 228148563 G T COL4A3 Missense_Mutation p.G913W 0.09 unknown(0) TCGA-AD-6895-01 2 228419156 228419156 G A AGFG1 Missense_Mutation p.G567D 0.28 deleterious(0) benign(0.279) TCGA-AD-6895-01 2 228758589 228758589 C T DAW1 Silent p.G132G 0.29 TCGA-AD-6895-01 2 228882341 228882341 G A SPHKAP Missense_Mutation p.R1077W 0.22 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 2 230723946 230723946 T C TRIP12 Missense_Mutation p.K148R 0.32 deleterious_low_confidence(0.03) probably_damaging(0.931) TCGA-AD-6895-01 2 232326288 232326288 G A NCL Silent p.D192D 0.29 TCGA-AD-6895-01 2 232393453 232393453 C A NMUR1 Silent p.T93T 0.17 TCGA-AD-6895-01 2 232574934 232574934 G A PTMA Intron 0.47 TCGA-AD-6895-01 2 233246379 233246379 C T ALPP Silent p.T494T 0.22 TCGA-AD-6895-01 2 233709241 233709241 C G GIGYF2 Missense_Mutation p.P1109A 0.33 unknown(0) TCGA-AD-6895-01 2 234217900 234217900 G A SAG Missense_Mutation p.R22Q 0.29 tolerated(0.12) possibly_damaging(0.699) TCGA-AD-6895-01 2 234418767 234418767 A - USP40 Frame_Shift_Del p.F858Lfs*16 0.20 TCGA-AD-6895-01 2 234526505 234526505 G - UGT1A8 Frame_Shift_Del p.H53Mfs*5 0.24 TCGA-AD-6895-01 2 235950963 235950963 C T SH3BP4 Missense_Mutation p.A517V 0.26 deleterious(0.01) benign(0.097) TCGA-AD-6895-01 2 237149997 237149997 G A ASB18 Missense_Mutation p.A85V 0.33 tolerated(0.68) benign(0.203) TCGA-AD-6895-01 2 238428570 238428570 C T MLPH Silent p.S191S 0.20 TCGA-AD-6895-01 2 239355080 239355080 C T ASB1 Silent p.G312G 0.15 TCGA-AD-6895-01 2 24098743 24098743 C T ATAD2B Silent p.T311T 0.24 TCGA-AD-6895-01 2 241621922 241621922 C T AQP12B Silent p.T111T 0.31 TCGA-AD-6895-01 2 242021150 242021150 C T SNED1 Silent p.G1325G 0.12 TCGA-AD-6895-01 2 242501856 242501856 C T BOK Missense_Mutation p.A105V 0.27 tolerated(0.18) probably_damaging(1) TCGA-AD-6895-01 2 242594017 242594017 G A ATG4B Missense_Mutation p.A114T 0.18 tolerated(0.32) benign(0.109) TCGA-AD-6895-01 2 242694919 242694919 C T D2HGDH Intron 0.26 TCGA-AD-6895-01 2 242814314 242814314 G A CXXC11 Missense_Mutation p.A203T 0.27 tolerated(1) benign(0.009) TCGA-AD-6895-01 2 24338441 24338441 G A PFN4 3'UTR 0.45 TCGA-AD-6895-01 2 25180791 25180791 A T DNAJC27 Missense_Mutation p.V98D 0.26 deleterious(0) probably_damaging(0.968) TCGA-AD-6895-01 2 25799862 25799862 C T DTNB Missense_Mutation p.V241M 0.24 deleterious(0.03) probably_damaging(0.984) TCGA-AD-6895-01 2 26179246 26179246 A G KIF3C Missense_Mutation p.M538T 0.30 benign(0.045) TCGA-AD-6895-01 2 26203739 26203739 C T KIF3C Missense_Mutation p.D350N 0.29 possibly_damaging(0.815) TCGA-AD-6895-01 2 26411219 26411220 TA - GAREML 3'UTR 0.53 TCGA-AD-6895-01 2 26726672 26726672 T - OTOF Frame_Shift_Del p.N184Tfs*29 0.31 TCGA-AD-6895-01 2 27292983 27292983 G T AGBL5 Missense_Mutation p.R838L 0.16 deleterious_low_confidence(0) benign(0.195) TCGA-AD-6895-01 2 27360429 27360429 G A C2orf53 Missense_Mutation p.R257W 0.27 deleterious(0) probably_damaging(0.96) TCGA-AD-6895-01 2 27360939 27360939 A T C2orf53 Missense_Mutation p.Y87N 0.27 tolerated(0.16) benign(0.007) TCGA-AD-6895-01 2 27429797 27429797 C T SLC5A6 Missense_Mutation p.R136Q 0.28 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 2 27702969 27702969 G C IFT172 Missense_Mutation p.A278G 0.19 tolerated(0.3) benign(0.012) TCGA-AD-6895-01 2 29295401 29295401 G - C2orf71 Frame_Shift_Del p.P576Qfs*6 0.29 TCGA-AD-6895-01 2 31483676 31483676 G A EHD3 Missense_Mutation p.R268Q 0.26 deleterious(0.01) benign(0.154) TCGA-AD-6895-01 2 31489066 31489066 T C EHD3 Silent p.F368F 0.35 TCGA-AD-6895-01 2 32475395 32475395 T A NLRC4 Missense_Mutation p.Y513F 0.26 tolerated(0.63) benign(0.179) TCGA-AD-6895-01 2 32983506 32983506 G T TTC27 Missense_Mutation p.A534S 0.31 deleterious(0.02) benign(0.089) TCGA-AD-6895-01 2 33174012 33174012 C T LTBP1 Missense_Mutation p.P189S 0.34 deleterious(0) probably_damaging(0.988) TCGA-AD-6895-01 2 33590516 33590516 C T LTBP1 Silent p.L1553L 0.16 TCGA-AD-6895-01 2 33813409 33813409 T C FAM98A Missense_Mutation p.E172G 0.18 deleterious(0.03) benign(0.346) TCGA-AD-6895-01 2 37376193 37376193 A - EIF2AK2 Intron 0.17 TCGA-AD-6895-01 2 37499576 37499576 C T PRKD3 Splice_Site p.X551_splice 0.08 TCGA-AD-6895-01 2 39029941 39029941 G A DHX57 Silent p.G1311G 0.24 TCGA-AD-6895-01 2 40656862 40656862 C A SLC8A1 Missense_Mutation p.V187F 0.34 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 2 42281195 42281195 G A PKDCC Missense_Mutation p.R261H 0.26 deleterious(0.03) possibly_damaging(0.701) TCGA-AD-6895-01 2 43452512 43452512 C - ZFP36L2 Frame_Shift_Del p.G144Afs*43 0.18 TCGA-AD-6895-01 2 46986015 46986015 C T SOCS5 Nonsense_Mutation p.R116* 0.12 TCGA-AD-6895-01 2 47387811 47387811 T - CALM2 3'UTR 0.25 TCGA-AD-6895-01 2 47656896 47656896 A G MSH2 Silent p.E364E 0.29 TCGA-AD-6895-01 2 48063069 48063069 T C FBXO11 Missense_Mutation p.Q220R 0.23 tolerated(0.55) benign(0.068) TCGA-AD-6895-01 2 48906687 48906687 T - STON1-GTF2A1L 3'UTR 0.20 TCGA-AD-6895-01 2 54040108 54040108 C A ERLEC1 Missense_Mutation p.S375Y 0.22 deleterious(0.02) possibly_damaging(0.861) TCGA-AD-6895-01 2 54895832 54895832 T A SPTBN1 3'UTR 0.44 TCGA-AD-6895-01 2 5834100 5834100 A G SOX11 Missense_Mutation p.Y416C 0.27 deleterious(0) probably_damaging(0.99) TCGA-AD-6895-01 2 5837787 5837787 G A SOX11 3'UTR 0.26 TCGA-AD-6895-01 2 61324967 61324967 G C KIAA1841 Missense_Mutation p.D449H 0.21 deleterious(0) probably_damaging(0.985) TCGA-AD-6895-01 2 61391542 61391542 T A C2orf74 Silent p.V155V 0.14 TCGA-AD-6895-01 2 61450271 61450271 C T USP34 Missense_Mutation p.R2558H 0.26 deleterious(0) probably_damaging(0.964) TCGA-AD-6895-01 2 61575066 61575066 G A USP34 Nonsense_Mutation p.R742* 0.25 TCGA-AD-6895-01 2 62100430 62100430 T C CCT4 Splice_Site p.X306_splice 0.31 TCGA-AD-6895-01 2 64863430 64863430 C T SERTAD2 Silent p.A192A 0.23 TCGA-AD-6895-01 2 68882259 68882259 G A PROKR1 Missense_Mutation p.V245M 0.31 deleterious(0) probably_damaging(0.913) TCGA-AD-6895-01 2 69240585 69240585 G A ANTXR1 5'UTR 0.33 TCGA-AD-6895-01 2 70130332 70130332 C T SNRNP27 Missense_Mutation p.S123F 0.27 deleterious(0.01) probably_damaging(0.916) TCGA-AD-6895-01 2 70524373 70524373 A - FAM136A 3'UTR 0.21 TCGA-AD-6895-01 2 73453096 73453096 C A SMYD5 3'UTR 0.30 TCGA-AD-6895-01 2 74146639 74146639 G A ACTG2 Missense_Mutation p.M356I 0.32 deleterious_low_confidence(0.02) benign(0.098) TCGA-AD-6895-01 2 74173946 74173946 T A DGUOK Missense_Mutation p.L119Q 0.13 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 2 74641991 74641991 C T C2orf81 Missense_Mutation p.R411Q 0.19 tolerated(0.74) benign(0.003) TCGA-AD-6895-01 2 74642322 74642322 C T C2orf81 Missense_Mutation p.A301T 0.08 tolerated(0.27) possibly_damaging(0.586) TCGA-AD-6895-01 2 74653435 74653435 A T RTKN Missense_Mutation p.S543T 0.27 tolerated(0.09) benign(0.153) TCGA-AD-6895-01 2 74724839 74724839 C T LBX2 3'UTR 0.38 TCGA-AD-6895-01 2 74749713 74749713 G A DQX1 Missense_Mutation p.L497F 0.22 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 2 74751195 74751195 A C DQX1 Missense_Mutation p.I224R 0.33 deleterious(0) benign(0.11) TCGA-AD-6895-01 2 85529689 85529689 C - TCF7L1 Frame_Shift_Del p.G205Afs*72 0.19 TCGA-AD-6895-01 2 85777736 85777736 G A GGCX Missense_Mutation p.P676S 0.34 tolerated(0.73) benign(0.002) TCGA-AD-6895-01 2 85786081 85786081 G T GGCX Missense_Mutation p.P111Q 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-AD-6895-01 2 85838750 85838750 A T C2orf68 Intron 0.17 TCGA-AD-6895-01 2 87015653 87015653 C T CD8A Missense_Mutation p.R219Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 2 88327747 88327747 T C KRCC1 Silent p.S112S 0.27 TCGA-AD-6895-01 2 8873728 8873728 G A KIDINS220 Missense_Mutation p.P1300L 0.25 tolerated_low_confidence(0.49) benign(0.001) TCGA-AD-6895-01 2 90192973 90192973 T A IGKV1D-13 Missense_Mutation p.L9H 0.22 deleterious(0) probably_damaging(0.953) TCGA-AD-6895-01 2 96260831 96260831 A - TRIM43 Frame_Shift_Del p.K150Rfs*29 0.18 TCGA-AD-6895-01 2 96525816 96525816 A G ANKRD36C Missense_Mutation p.V257A 0.15 tolerated(0.21) probably_damaging(0.932) TCGA-AD-6895-01 2 97007437 97007437 C T NCAPH Missense_Mutation p.A26V 0.32 tolerated(0.4) benign(0.005) TCGA-AD-6895-01 2 97363413 97363413 A C FER1L5 RNA 0.23 TCGA-AD-6895-01 2 98737883 98737883 C T VWA3B Missense_Mutation p.R222C 0.43 tolerated(0.23) benign(0.004) TCGA-AD-6895-01 3 101232047 101232047 G A SENP7 5'Flank 0.32 TCGA-AD-6895-01 3 10370597 10370597 G A ATP2B2 Silent p.S1211S 0.23 TCGA-AD-6895-01 3 113376326 113376326 T C KIAA2018 Silent p.L1401L 0.24 TCGA-AD-6895-01 3 119306732 119306732 G A ADPRH 3'UTR 0.38 TCGA-AD-6895-01 3 120118751 120118751 G T FSTL1 Silent p.V287V 0.31 TCGA-AD-6895-01 3 121489186 121489186 T G IQCB1 3'UTR 0.26 TCGA-AD-6895-01 3 121838411 121838411 T - CD86 3'UTR 0.17 TCGA-AD-6895-01 3 122002846 122002846 C T CASR Missense_Mutation p.P692L 0.29 tolerated(0.24) probably_damaging(0.986) TCGA-AD-6895-01 3 122134853 122134853 C T WDR5B 5'UTR 0.18 TCGA-AD-6895-01 3 124635228 124635228 C T MUC13 Silent p.K299K 0.29 TCGA-AD-6895-01 3 126260704 126260704 C T CHST13 Silent p.D103D 0.33 TCGA-AD-6895-01 3 127298993 127298993 G A TPRA1 5'UTR 0.25 TCGA-AD-6895-01 3 127395140 127395140 G A ABTB1 Missense_Mutation p.D116N 0.31 deleterious(0) probably_damaging(0.954) TCGA-AD-6895-01 3 128998601 128998601 T A HMCES Nonsense_Mutation p.L9* 0.22 TCGA-AD-6895-01 3 13413351 13413351 A G NUP210 Missense_Mutation p.V590A 0.21 deleterious(0.05) benign(0.097) TCGA-AD-6895-01 3 135721048 135721048 A T PPP2R3A Missense_Mutation p.L236F 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AD-6895-01 3 13670715 13670715 G A FBLN2 Missense_Mutation p.C922Y 0.25 deleterious(0) probably_damaging(0.956) TCGA-AD-6895-01 3 13671425 13671425 C T FBLN2 Missense_Mutation p.A983V 0.33 tolerated(0.32) possibly_damaging(0.559) TCGA-AD-6895-01 3 138739335 138739335 G A PRR23B Missense_Mutation p.L57F 0.29 tolerated(0.1) probably_damaging(0.939) TCGA-AD-6895-01 3 140265502 140265502 A T CLSTN2 Missense_Mutation p.E551D 0.21 tolerated(0.29) benign(0.011) TCGA-AD-6895-01 3 142030643 142030643 T - XRN1 Frame_Shift_Del p.R1611Gfs*34 0.22 TCGA-AD-6895-01 3 14208712 14208712 G A XPC Missense_Mutation p.A193V 0.28 tolerated(0.05) benign(0.002) TCGA-AD-6895-01 3 14208718 14208718 C T XPC Missense_Mutation p.R191Q 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-AD-6895-01 3 142261540 142261540 C T ATR Silent p.L1139L 0.33 TCGA-AD-6895-01 3 142503840 142503840 G A TRPC1 Missense_Mutation p.A419T 0.32 tolerated(0.18) benign(0.352) TCGA-AD-6895-01 3 142840229 142840229 T C CHST2 Missense_Mutation p.F191L 0.15 deleterious(0) probably_damaging(0.982) TCGA-AD-6895-01 3 142840664 142840664 G A CHST2 Missense_Mutation p.A336T 0.20 deleterious(0) probably_damaging(0.996) TCGA-AD-6895-01 3 142840811 142840811 G A CHST2 Missense_Mutation p.G385S 0.24 tolerated(0.43) probably_damaging(0.997) TCGA-AD-6895-01 3 143691812 143691812 C T C3orf58 Missense_Mutation p.P213L 0.24 deleterious(0.01) benign(0.433) TCGA-AD-6895-01 3 147113721 147113721 C A ZIC4 Missense_Mutation p.K252N 0.29 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 3 148563303 148563303 C T CPB1 Missense_Mutation p.R291C 0.34 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 3 148863159 148863160 - A HPS3 Frame_Shift_Ins p.N332Kfs*31 0.26 TCGA-AD-6895-01 3 150289746 150289746 A - EIF2A Frame_Shift_Del p.N273Mfs*7 0.26 TCGA-AD-6895-01 3 150903202 150903202 C T MED12L Missense_Mutation p.A527V 0.35 tolerated(1) benign(0.038) TCGA-AD-6895-01 3 152881371 152881371 A - RAP2B 3'UTR 0.28 TCGA-AD-6895-01 3 15300258 15300258 G A SH3BP5 Intron 0.22 TCGA-AD-6895-01 3 15468085 15468085 G A METTL6 5'UTR 0.29 TCGA-AD-6895-01 3 156260937 156260937 C A SSR3 3'UTR 0.22 TCGA-AD-6895-01 3 160219841 160219841 T C KPNA4 3'UTR 0.32 TCGA-AD-6895-01 3 16306413 16306413 C T DPH3 5'UTR 0.29 TCGA-AD-6895-01 3 169587586 169587586 T A LRRC31 Missense_Mutation p.T4S 0.25 tolerated(0.3) benign(0.081) TCGA-AD-6895-01 3 170184762 170184762 A - SLC7A14 3'UTR 0.17 TCGA-AD-6895-01 3 179082915 179082915 T - MFN1 Frame_Shift_Del p.H221Tfs*3 0.22 TCGA-AD-6895-01 3 182871831 182871831 G A LAMP3 Missense_Mutation p.S133L 0.30 deleterious(0.05) probably_damaging(0.909) TCGA-AD-6895-01 3 183683237 183683237 G A ABCC5 Missense_Mutation p.A629V 0.09 deleterious(0.01) possibly_damaging(0.533) TCGA-AD-6895-01 3 183896709 183896709 G A AP2M1 Missense_Mutation p.V47I 0.25 tolerated(1) benign(0.068) TCGA-AD-6895-01 3 183905456 183905456 T C ABCF3 Missense_Mutation p.V118A 0.16 deleterious(0) probably_damaging(0.927) TCGA-AD-6895-01 3 183959316 183959316 C T VWA5B2 Silent p.D1073D 0.30 TCGA-AD-6895-01 3 183959456 183959456 A G VWA5B2 Missense_Mutation p.D1120G 0.40 tolerated(0.17) benign(0.001) TCGA-AD-6895-01 3 184025733 184025733 G A PSMD2 Missense_Mutation p.R785Q 0.26 deleterious(0) possibly_damaging(0.9) TCGA-AD-6895-01 3 184094104 184094104 C T THPO 5'UTR 0.19 TCGA-AD-6895-01 3 184099308 184099308 C T CHRD Missense_Mutation p.P136L 0.27 tolerated(0.27) benign(0.002) TCGA-AD-6895-01 3 184922247 184922247 C A EHHADH Missense_Mutation p.W289C 0.50 deleterious(0) benign(0.023) TCGA-AD-6895-01 3 185209397 185209397 T - TMEM41A Frame_Shift_Del p.K241Nfs*9 0.18 TCGA-AD-6895-01 3 185783834 185783834 G A ETV5 Silent p.C226C 0.31 TCGA-AD-6895-01 3 186256578 186256578 C T CRYGS Silent p.R148R 0.24 TCGA-AD-6895-01 3 186336325 186336325 C - AHSG Frame_Shift_Del p.L193Sfs*53 0.12 TCGA-AD-6895-01 3 189713187 189713188 - A LEPREL1 Frame_Shift_Ins p.V176Rfs*3 0.18 TCGA-AD-6895-01 3 195480081 195480081 A T MUC4 Missense_Mutation p.C5117S 0.28 benign(0.027) TCGA-AD-6895-01 3 195487777 195487777 G A MUC4 Silent p.Y4942Y 0.31 TCGA-AD-6895-01 3 195984687 195984687 A T PCYT1A Silent p.T63T 0.50 TCGA-AD-6895-01 3 196050717 196050717 C T TM4SF19 Missense_Mutation p.G201S 0.11 tolerated(0.09) possibly_damaging(0.504) TCGA-AD-6895-01 3 196235001 196235001 T C SMCO1 Silent p.G134G 0.29 TCGA-AD-6895-01 3 197807344 197807344 C G ANKRD18DP RNA 0.25 TCGA-AD-6895-01 3 25792650 25792650 C T NGLY1 Silent p.P199P 0.25 TCGA-AD-6895-01 3 32932353 32932353 C T TRIM71 Nonsense_Mutation p.R553* 0.27 TCGA-AD-6895-01 3 33644564 33644564 G A CLASP2 Nonsense_Mutation p.R603* 0.32 TCGA-AD-6895-01 3 33894077 33894077 T C PDCD6IP Missense_Mutation p.M585T 0.28 deleterious(0) probably_damaging(0.992) TCGA-AD-6895-01 3 38347996 38347996 T A SLC22A14 Missense_Mutation p.I160N 0.24 deleterious(0) probably_damaging(0.995) TCGA-AD-6895-01 3 386302 386302 T G CHL1 Missense_Mutation p.L253R 0.19 deleterious(0) probably_damaging(0.913) TCGA-AD-6895-01 3 3887235 3887235 G A LRRN1 Missense_Mutation p.D304N 0.36 deleterious(0) probably_damaging(0.98) TCGA-AD-6895-01 3 3889142 3889142 T - LRRN1 3'UTR 0.13 TCGA-AD-6895-01 3 38962603 38962603 T A SCN11A Missense_Mutation p.R286W 0.23 tolerated(0.24) possibly_damaging(0.591) TCGA-AD-6895-01 3 38986961 38986961 G A SCN11A Silent p.C143C 0.24 TCGA-AD-6895-01 3 42916565 42916567 CTT - CYP8B1 In_Frame_Del p.K248del 0.42 TCGA-AD-6895-01 3 43122414 43122414 G A POMGNT2 Silent p.D170D 0.20 TCGA-AD-6895-01 3 44489577 44489577 G A ZNF445 Missense_Mutation p.A529V 0.14 tolerated(1) possibly_damaging(0.798) TCGA-AD-6895-01 3 45077290 45077290 C T CLEC3B Silent p.I161I 0.25 TCGA-AD-6895-01 3 4726852 4726852 G A ITPR1 Missense_Mutation p.A1207T 0.20 tolerated(0.69) benign(0.006) TCGA-AD-6895-01 3 47889791 47889791 T C DHX30 Missense_Mutation p.M803T 0.30 deleterious(0) probably_damaging(0.922) TCGA-AD-6895-01 3 47891023 47891023 T A DHX30 Missense_Mutation p.L1057Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 3 47891171 47891171 G A DHX30 Silent p.K1081K 0.12 TCGA-AD-6895-01 3 4856822 4856822 T C ITPR1 Missense_Mutation p.V2581A 0.32 deleterious(0) probably_damaging(0.989) TCGA-AD-6895-01 3 48696668 48696668 C T CELSR3 Missense_Mutation p.A1134T 0.34 tolerated(0.99) benign(0.011) TCGA-AD-6895-01 3 49405932 49405932 A G RHOA Missense_Mutation p.L69P 0.23 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 3 49412866 49412866 C T RHOA Splice_Site p.X52_splice 0.11 TCGA-AD-6895-01 3 49724499 49724499 G A MST1 Silent p.A203A 0.43 TCGA-AD-6895-01 3 49755795 49755797 GTT - AMIGO3 In_Frame_Del p.N368del 0.33 TCGA-AD-6895-01 3 49849433 49849433 G A UBA7 Missense_Mutation p.A270V 0.30 deleterious(0) possibly_damaging(0.753) TCGA-AD-6895-01 3 50137640 50137640 G T RBM5 Intron 0.29 TCGA-AD-6895-01 3 50223716 50223716 G A SEMA3F Missense_Mutation p.R583Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 3 50294932 50294932 G A GNAI2 Missense_Mutation p.G293E 0.30 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 3 50405271 50405271 G A CACNA2D2 Missense_Mutation p.R743C 0.25 deleterious(0.01) possibly_damaging(0.901) TCGA-AD-6895-01 3 51477862 51477862 T C VPRBP Missense_Mutation p.T145A 0.26 tolerated(0.55) benign(0.121) TCGA-AD-6895-01 3 52255665 52255665 G A TLR9 Silent p.N1043N 0.28 TCGA-AD-6895-01 3 52387422 52387422 C T DNAH1 Missense_Mutation p.R1085W 0.43 benign(0.197) TCGA-AD-6895-01 3 52523372 52523372 A T NISCH Missense_Mutation p.E1045V 0.28 tolerated(0.08) possibly_damaging(0.558) TCGA-AD-6895-01 3 52539939 52539939 A T STAB1 Missense_Mutation p.Y579F 0.29 tolerated(0.32) benign(0.075) TCGA-AD-6895-01 3 52547936 52547936 A G STAB1 Missense_Mutation p.Q1129R 0.09 tolerated(0.22) benign(0.001) TCGA-AD-6895-01 3 52552790 52552790 G T STAB1 Missense_Mutation p.V1647L 0.36 tolerated(0.17) possibly_damaging(0.837) TCGA-AD-6895-01 3 52559102 52559102 G A NT5DC2 Silent p.H408H 0.36 TCGA-AD-6895-01 3 52730284 52730286 CTT - GLT8D1 In_Frame_Del p.K166del 0.19 TCGA-AD-6895-01 3 56330161 56330161 T A ERC2 Missense_Mutation p.K320N 0.35 tolerated(0.23) possibly_damaging(0.574) TCGA-AD-6895-01 3 56681079 56681079 A - FAM208A Frame_Shift_Del p.F562Lfs*21 0.24 TCGA-AD-6895-01 3 57415431 57415431 A T DNAH12 Missense_Mutation p.L1661H 0.24 deleterious(0) probably_damaging(0.963) TCGA-AD-6895-01 3 57457279 57457280 TC - snoU13 5'Flank 0.26 TCGA-AD-6895-01 3 58639468 58639468 C A FAM3D Silent p.T18T 0.35 TCGA-AD-6895-01 3 63981399 63981399 C T ATXN7 Missense_Mutation p.A634V 0.24 tolerated(0.08) probably_damaging(0.999) TCGA-AD-6895-01 3 63996422 63996422 C T PSMD6 Nonsense_Mutation p.W364* 0.19 TCGA-AD-6895-01 3 64636696 64636696 A - ADAMTS9 Frame_Shift_Del p.L487* 0.28 TCGA-AD-6895-01 3 69074743 69074743 T A TMF1 Nonsense_Mutation p.K994* 0.29 TCGA-AD-6895-01 3 69074854 69074854 G A TMF1 Missense_Mutation p.H957Y 0.25 tolerated(1) benign(0.002) TCGA-AD-6895-01 3 71745643 71745643 C T EIF4E3 Missense_Mutation p.V125I 0.31 tolerated(0.37) benign(0.036) TCGA-AD-6895-01 3 89498400 89498400 C T EPHA3 Missense_Mutation p.T791I 0.23 deleterious(0) possibly_damaging(0.802) TCGA-AD-6895-01 3 9027478 9027478 G T SRGAP3 Missense_Mutation p.P1009T 0.43 tolerated(0.2) benign(0.003) TCGA-AD-6895-01 3 97677972 97677973 - G MINA Frame_Shift_Ins p.T202Hfs*22 0.29 TCGA-AD-6895-01 3 98503844 98503844 A G ST3GAL6 Missense_Mutation p.T131A 0.34 deleterious(0) benign(0.303) TCGA-AD-6895-01 3 9868895 9868895 G A TTLL3 Silent p.T506T 0.26 TCGA-AD-6895-01 4 104510736 104510736 T C TACR3 3'UTR 0.16 TCGA-AD-6895-01 4 109677622 109677622 C A ETNPPL Missense_Mutation p.R121L 0.38 deleterious(0) probably_damaging(0.92) TCGA-AD-6895-01 4 109748306 109748306 C T COL25A1 Silent p.G583G 0.37 TCGA-AD-6895-01 4 109861724 109861724 C A COL25A1 Missense_Mutation p.D215Y 0.30 tolerated(0.09) unknown(0) TCGA-AD-6895-01 4 110223188 110223188 G A COL25A1 5'UTR 0.21 TCGA-AD-6895-01 4 110615798 110615798 G A CASP6 Silent p.G122G 0.23 TCGA-AD-6895-01 4 113538886 113538886 T - C4orf21 Frame_Shift_Del p.K771Sfs*52 0.09 TCGA-AD-6895-01 4 113567544 113567545 - A LARP7 Frame_Shift_Ins p.L90Ifs*4 0.22 TCGA-AD-6895-01 4 115585217 115585217 G A UGT8 Missense_Mutation p.V297I 0.35 tolerated(0.45) possibly_damaging(0.779) TCGA-AD-6895-01 4 115792072 115792072 C G NDST4 Missense_Mutation p.G524A 0.23 tolerated(0.1) probably_damaging(0.995) TCGA-AD-6895-01 4 122766818 122766818 C T BBS7 Silent p.L357L 0.09 TCGA-AD-6895-01 4 123150334 123150334 G A KIAA1109 Missense_Mutation p.R994H 0.27 possibly_damaging(0.685) TCGA-AD-6895-01 4 123813454 123813454 A T FGF2 Missense_Mutation p.Y257F 0.28 tolerated(0.2) benign(0.313) TCGA-AD-6895-01 4 123859340 123859340 C T SPATA5 Missense_Mutation p.A465V 0.25 tolerated(0.54) probably_damaging(0.938) TCGA-AD-6895-01 4 124322989 124322989 A G SPRY1 Missense_Mutation p.I81M 0.27 tolerated(0.13) benign(0.256) TCGA-AD-6895-01 4 126355485 126355485 G A FAT4 Silent p.A2368A 0.33 TCGA-AD-6895-01 4 126369942 126369942 G T FAT4 Nonsense_Mutation p.G2591* 0.24 TCGA-AD-6895-01 4 126411586 126411586 C - FAT4 Frame_Shift_Del p.E4539Rfs*31 0.10 TCGA-AD-6895-01 4 1305832 1305832 C G MAEA Missense_Mutation p.S45R 0.21 tolerated(0.11) benign(0.087) TCGA-AD-6895-01 4 135122388 135122388 C T PABPC4L 5'UTR 0.32 TCGA-AD-6895-01 4 140201232 140201232 G A MGARP Silent p.D27D 0.15 TCGA-AD-6895-01 4 140641217 140641217 T C MAML3 Missense_Mutation p.T893A 0.11 benign(0.001) TCGA-AD-6895-01 4 141543860 141543860 G A TBC1D9 Missense_Mutation p.P1097L 0.26 tolerated(0.06) benign(0.021) TCGA-AD-6895-01 4 144135593 144135593 A - USP38 Frame_Shift_Del p.K823Nfs*2 0.16 TCGA-AD-6895-01 4 144801563 144801563 C T GYPE Splice_Site p.X46_splice 0.18 TCGA-AD-6895-01 4 146076751 146076751 C A OTUD4 Nonsense_Mutation p.E195* 0.29 TCGA-AD-6895-01 4 149356390 149356390 G A NR3C2 Silent p.D541D 0.36 TCGA-AD-6895-01 4 15444084 15444084 C T C1QTNF7 Silent p.H184H 0.32 TCGA-AD-6895-01 4 154709640 154709640 C T SFRP2 Silent p.S116S 0.25 TCGA-AD-6895-01 4 155249246 155249246 T A DCHS2 Silent p.S884S 0.20 TCGA-AD-6895-01 4 15530282 15530282 C T CC2D2A Missense_Mutation p.P467S 0.29 tolerated(1) benign(0.006) TCGA-AD-6895-01 4 15534831 15534831 C A CC2D2A Missense_Mutation p.F494L 0.28 tolerated(1) benign(0) TCGA-AD-6895-01 4 155505491 155505491 C T FGA Missense_Mutation p.E796K 0.17 deleterious(0) possibly_damaging(0.601) TCGA-AD-6895-01 4 156723538 156723538 G A GUCY1B3 Missense_Mutation p.R407Q 0.25 tolerated(0.05) possibly_damaging(0.691) TCGA-AD-6895-01 4 158041763 158041763 T C GLRB Silent p.L60L 0.07 TCGA-AD-6895-01 4 158060079 158060079 T C GLRB Silent p.C243C 0.12 TCGA-AD-6895-01 4 159569825 159569825 T - RXFP1 Frame_Shift_Del p.F645Lfs*2 0.12 TCGA-AD-6895-01 4 160253755 160253755 A - RAPGEF2 Frame_Shift_Del p.S522Vfs*12 0.21 TCGA-AD-6895-01 4 170641091 170641091 C T CLCN3 Missense_Mutation p.P826S 0.27 tolerated_low_confidence(0.14) probably_damaging(0.986) TCGA-AD-6895-01 4 1720258 1720258 C T TMEM129 Missense_Mutation p.V101M 0.25 deleterious(0.03) benign(0.318) TCGA-AD-6895-01 4 17806161 17806161 T - DCAF16 5'UTR 0.22 TCGA-AD-6895-01 4 1807877 1807877 G A FGFR3 Missense_Mutation p.D648N 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-AD-6895-01 4 183675847 183675847 G A TENM3 Missense_Mutation p.G1443R 0.21 deleterious(0) probably_damaging(0.98) TCGA-AD-6895-01 4 183812470 183812470 T G DCTD 3'UTR 0.38 TCGA-AD-6895-01 4 184366071 184366071 C T CDKN2AIP Missense_Mutation p.R41C 0.28 deleterious(0) unknown(0) TCGA-AD-6895-01 4 187628612 187628612 C T FAT1 Silent p.L790L 0.26 TCGA-AD-6895-01 4 188924330 188924331 - A ZFP42 Frame_Shift_Ins p.G126Rfs*17 0.15 TCGA-AD-6895-01 4 25915840 25915840 A G SMIM20 5'UTR 0.35 TCGA-AD-6895-01 4 2696768 2696768 A G FAM193A Missense_Mutation p.E772G 0.37 deleterious(0.01) benign(0.154) TCGA-AD-6895-01 4 3318036 3318036 G A RGS12 Missense_Mutation p.V47I 0.40 tolerated(0.9) possibly_damaging(0.904) TCGA-AD-6895-01 4 3430400 3430400 A G RGS12 Missense_Mutation p.K1176R 0.30 tolerated(0.2) benign(0.037) TCGA-AD-6895-01 4 37246740 37246740 G A KIAA1239 Silent p.A17A 0.33 TCGA-AD-6895-01 4 38698868 38698868 G A KLF3 Missense_Mutation p.R341H 0.27 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 4 39905787 39905787 T C PDS5A Missense_Mutation p.M420V 0.26 tolerated(0.47) benign(0.219) TCGA-AD-6895-01 4 40439905 40439905 C T RBM47 Missense_Mutation p.A336T 0.26 tolerated(0.5) benign(0.002) TCGA-AD-6895-01 4 42119666 42119666 C T BEND4 Missense_Mutation p.G492S 0.22 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AD-6895-01 4 42122162 42122162 G A BEND4 Silent p.C432C 0.31 TCGA-AD-6895-01 4 42154045 42154045 T A BEND4 Missense_Mutation p.K39M 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-AD-6895-01 4 42403533 42403533 C T SHISA3 3'UTR 0.17 TCGA-AD-6895-01 4 4285435 4285435 G A LYAR Missense_Mutation p.S12L 0.19 deleterious(0) probably_damaging(0.909) TCGA-AD-6895-01 4 54966681 54966681 C T GSX2 Missense_Mutation p.A57V 0.42 tolerated(0.19) benign(0.041) TCGA-AD-6895-01 4 55141062 55141062 C T PDGFRA Missense_Mutation p.H570Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 4 55991418 55991418 C T KDR Missense_Mutation p.V15M 0.34 tolerated(0.1) benign(0.02) TCGA-AD-6895-01 4 5633565 5633565 T C EVC2 Silent p.K555K 0.18 TCGA-AD-6895-01 4 57216120 57216120 A G AASDH Silent p.I599I 0.26 TCGA-AD-6895-01 4 5798886 5798886 G A EVC Missense_Mutation p.R675Q 0.20 deleterious(0) probably_damaging(0.939) TCGA-AD-6895-01 4 6302713 6302713 C T WFS1 Silent p.F397F 0.34 TCGA-AD-6895-01 4 6303455 6303455 C A WFS1 Missense_Mutation p.L645M 0.20 deleterious(0.03) possibly_damaging(0.527) TCGA-AD-6895-01 4 69198530 69198530 C T YTHDC1 Missense_Mutation p.V337I 0.22 deleterious(0.05) benign(0.09) TCGA-AD-6895-01 4 7056536 7056536 G A TADA2B Missense_Mutation p.A340T 0.36 tolerated(0.47) benign(0.001) TCGA-AD-6895-01 4 71640914 71640914 A T RUFY3 Missense_Mutation p.Q263L 0.27 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 4 75065526 75065526 G A MTHFD2L Missense_Mutation p.R156Q 0.25 tolerated(0.25) benign(0.405) TCGA-AD-6895-01 4 75937686 75937686 C T PARM1 Missense_Mutation p.P32L 0.21 tolerated(0.06) benign(0.082) TCGA-AD-6895-01 4 76703899 76703900 - T USO1 Frame_Shift_Ins p.K253* 0.22 TCGA-AD-6895-01 4 76878741 76878741 C A SDAD1 Nonsense_Mutation p.E567* 0.28 TCGA-AD-6895-01 4 77662335 77662335 C T SHROOM3 Silent p.A1003A 0.50 TCGA-AD-6895-01 4 77816391 77816391 C T SOWAHB 3'UTR 0.33 TCGA-AD-6895-01 4 79792072 79792072 G A BMP2K Missense_Mutation p.R456H 0.33 tolerated_low_confidence(0.42) unknown(0) TCGA-AD-6895-01 4 81791227 81791227 G A C4orf22 Silent p.T155T 0.27 TCGA-AD-6895-01 4 81952486 81952486 C T BMP3 Silent p.C16C 0.33 TCGA-AD-6895-01 4 83765654 83765654 A T SEC31A Missense_Mutation p.N837K 0.36 tolerated(0.74) benign(0.033) TCGA-AD-6895-01 4 8584278 8584278 T C GPR78 Missense_Mutation p.I230T 0.41 tolerated(0.56) benign(0.005) TCGA-AD-6895-01 4 87744877 87744877 A C SLC10A6 Silent p.A366A 0.22 TCGA-AD-6895-01 4 90856382 90856382 T C MMRN1 Silent p.H517H 0.26 TCGA-AD-6895-01 4 91844570 91844570 C T CCSER1 Missense_Mutation p.S715F 0.48 deleterious(0.04) probably_damaging(0.914) TCGA-AD-6895-01 4 96075852 96075852 A T BMPR1B 3'UTR 0.41 TCGA-AD-6895-01 4 96075855 96075855 A G BMPR1B 3'UTR 0.44 TCGA-AD-6895-01 4 9785349 9785349 G C DRD5 3'UTR 0.26 TCGA-AD-6895-01 4 99397352 99397352 A C TSPAN5 Missense_Mutation p.I243M 0.35 deleterious(0) possibly_damaging(0.472) TCGA-AD-6895-01 5 101576452 101576452 C T SLCO4C1 Missense_Mutation p.G616R 0.27 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 5 112770494 112770494 C A TSSK1B Missense_Mutation p.G15W 0.26 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 5 118480259 118480259 T A DMXL1 Missense_Mutation p.V832D 0.08 deleterious(0) possibly_damaging(0.764) TCGA-AD-6895-01 5 118485646 118485646 C T DMXL1 Missense_Mutation p.T1375I 0.19 deleterious(0.04) possibly_damaging(0.461) TCGA-AD-6895-01 5 118574737 118574737 C T DMXL1 Silent p.S2850S 0.23 TCGA-AD-6895-01 5 121187927 121187927 C T FTMT Missense_Mutation p.A90V 0.37 deleterious(0.02) possibly_damaging(0.784) TCGA-AD-6895-01 5 126993460 126993460 G A CTXN3 3'UTR 0.34 TCGA-AD-6895-01 5 126993464 126993464 G A CTXN3 3'UTR 0.32 TCGA-AD-6895-01 5 128448683 128448683 T C ISOC1 Missense_Mutation p.S296P 0.08 tolerated(0.06) benign(0.016) TCGA-AD-6895-01 5 130797767 130797767 T - RAPGEF6 Frame_Shift_Del p.N832Ifs*17 0.25 TCGA-AD-6895-01 5 1320765 1320765 C T CLPTM1L Missense_Mutation p.D500N 0.27 deleterious(0) probably_damaging(0.985) TCGA-AD-6895-01 5 132198032 132198032 A T GDF9 Missense_Mutation p.F205Y 0.26 tolerated(0.84) benign(0.106) TCGA-AD-6895-01 5 132228029 132228029 T A AFF4 Nonsense_Mutation p.K822* 0.34 TCGA-AD-6895-01 5 134296448 134296448 T C PCBD2 Intron 0.31 TCGA-AD-6895-01 5 134296450 134296450 G C PCBD2 Intron 0.32 TCGA-AD-6895-01 5 135551948 135551948 G A TRPC7 Missense_Mutation p.L787F 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-AD-6895-01 5 137756590 137756590 T A KDM3B Missense_Mutation p.L1304H 0.22 deleterious(0) probably_damaging(0.946) TCGA-AD-6895-01 5 138260304 138260304 G T CTNNA1 Missense_Mutation p.R551L 0.28 deleterious(0) probably_damaging(0.992) TCGA-AD-6895-01 5 138707778 138707778 A G SLC23A1 Missense_Mutation p.S576P 0.25 tolerated(0.12) benign(0) TCGA-AD-6895-01 5 138727719 138727719 G A PROB1 3'UTR 0.13 TCGA-AD-6895-01 5 139495191 139495191 T A PURA 3'UTR 0.28 TCGA-AD-6895-01 5 140023384 140023384 G A TMCO6 Missense_Mutation p.R313Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 5 140070448 140070448 T G HARS Missense_Mutation p.T58P 0.10 deleterious(0.01) possibly_damaging(0.548) TCGA-AD-6895-01 5 140071175 140071175 A T HARS2 5'UTR 0.14 TCGA-AD-6895-01 5 140174875 140174875 T G PCDHA2 Missense_Mutation p.I109S 0.09 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-AD-6895-01 5 140176054 140176054 G A PCDHA2 Missense_Mutation p.R502H 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.489) TCGA-AD-6895-01 5 140188796 140188796 C T PCDHA4 Missense_Mutation p.A675V 0.28 tolerated_low_confidence(0.11) benign(0.005) TCGA-AD-6895-01 5 140215327 140215327 G A PCDHA7 Silent p.P453P 0.26 TCGA-AD-6895-01 5 140222273 140222273 C T PCDHA8 Missense_Mutation p.A456V 0.26 deleterious_low_confidence(0.04) benign(0.024) TCGA-AD-6895-01 5 140223024 140223024 G A PCDHA8 Silent p.A706A 0.33 TCGA-AD-6895-01 5 140263695 140263695 G A PCDHA13 Silent p.A614A 0.36 TCGA-AD-6895-01 5 140532307 140532307 T C PCDHB6 3'UTR 0.18 TCGA-AD-6895-01 5 140532308 140532308 A C PCDHB6 3'UTR 0.18 TCGA-AD-6895-01 5 140558873 140558873 G A PCDHB8 Missense_Mutation p.V420I 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-AD-6895-01 5 140572732 140572732 G A PCDHB10 Missense_Mutation p.E203K 0.35 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AD-6895-01 5 140595714 140595714 C T PCDHB13 Silent p.L673L 0.15 TCGA-AD-6895-01 5 140724707 140724707 C T PCDHGA3 Silent p.I369I 0.31 TCGA-AD-6895-01 5 140741107 140741107 G A PCDHGB2 Missense_Mutation p.A469T 0.30 tolerated(0.11) benign(0.202) TCGA-AD-6895-01 5 140788959 140788959 C A PCDHGB6 Missense_Mutation p.S397Y 0.26 deleterious(0.03) benign(0.33) TCGA-AD-6895-01 5 140856226 140856226 G A PCDHGC3 Silent p.A181A 0.27 TCGA-AD-6895-01 5 140870426 140870426 G A PCDHGC5 Missense_Mutation p.G540D 0.26 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 5 141027073 141027073 C T FCHSD1 Silent p.E240E 0.32 TCGA-AD-6895-01 5 141046180 141046180 G A ARAP3 Silent p.L795L 0.32 TCGA-AD-6895-01 5 141243142 141243142 G T PCDH1 Silent p.S918S 0.28 TCGA-AD-6895-01 5 141244089 141244089 G A PCDH1 Silent p.L603L 0.24 TCGA-AD-6895-01 5 145493696 145493696 G A LARS Silent p.G1168G 0.25 TCGA-AD-6895-01 5 145529245 145529245 T A LARS Silent p.G481G 0.33 TCGA-AD-6895-01 5 145536967 145536967 T C LARS Missense_Mutation p.E355G 0.29 tolerated(0.06) benign(0.097) TCGA-AD-6895-01 5 146070692 146070692 C T PPP2R2B Missense_Mutation p.R152Q 0.30 tolerated(0.16) benign(0.006) TCGA-AD-6895-01 5 147024557 147024557 T C JAKMIP2 Silent p.L313L 0.23 TCGA-AD-6895-01 5 147481387 147481387 T - SPINK5 Frame_Shift_Del p.C451Afs*53 0.19 TCGA-AD-6895-01 5 147928285 147928285 T C HTR4 Missense_Mutation p.D100G 0.27 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 5 148207021 148207021 C T ADRB2 Silent p.Y209Y 0.36 TCGA-AD-6895-01 5 1483544 1483544 A C LPCAT1 Missense_Mutation p.L242R 0.18 deleterious(0) probably_damaging(0.98) TCGA-AD-6895-01 5 148617090 148617090 G A ABLIM3 Missense_Mutation p.R323H 0.31 deleterious(0.03) benign(0.03) TCGA-AD-6895-01 5 149502666 149502666 G A PDGFRB Missense_Mutation p.R708C 0.24 tolerated(0.08) benign(0.289) TCGA-AD-6895-01 5 149602730 149602730 T C CAMK2A Missense_Mutation p.I430V 0.25 tolerated_low_confidence(1) benign(0.002) TCGA-AD-6895-01 5 149901095 149901095 C T NDST1 Silent p.Y93Y 0.34 TCGA-AD-6895-01 5 150027975 150027975 A T SYNPO Missense_Mutation p.Q290H 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6895-01 5 150078817 150078817 C A RBM22 Missense_Mutation p.G42V 0.26 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 5 150411907 150411907 C T TNIP1 Missense_Mutation p.R606Q 0.33 deleterious_low_confidence(0.02) benign(0.165) TCGA-AD-6895-01 5 150900998 150900998 C T FAT2 Missense_Mutation p.R3719Q 0.26 possibly_damaging(0.59) TCGA-AD-6895-01 5 154181822 154181822 G - LARP1 Frame_Shift_Del p.D583Tfs*12 0.34 TCGA-AD-6895-01 5 154191081 154191081 T C LARP1 Missense_Mutation p.Y911H 0.34 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 5 157098783 157098783 C T C5orf52 Missense_Mutation p.P54L 0.29 deleterious(0.01) probably_damaging(0.96) TCGA-AD-6895-01 5 159659148 159659148 C T FABP6 Silent p.I86I 0.28 TCGA-AD-6895-01 5 160114896 160114896 G C ATP10B Silent p.V62V 0.09 TCGA-AD-6895-01 5 161580359 161580359 C A GABRG2 Silent p.S511S 0.07 TCGA-AD-6895-01 5 168098227 168098227 G A SLIT3 Missense_Mutation p.A1368V 0.17 tolerated(0.42) benign(0.003) TCGA-AD-6895-01 5 169145742 169145742 G A DOCK2 Silent p.K738K 0.24 TCGA-AD-6895-01 5 170814944 170814944 C T NPM1 5'UTR 0.33 TCGA-AD-6895-01 5 170817077 170817077 A T NPM1 Missense_Mutation p.K27N 0.29 deleterious(0.02) possibly_damaging(0.809) TCGA-AD-6895-01 5 175798855 175798855 G A ARL10 Missense_Mutation p.G231D 0.22 tolerated(0.1) probably_damaging(0.972) TCGA-AD-6895-01 5 175819819 175819819 G A CLTB Missense_Mutation p.R216C 0.23 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 5 176004549 176004549 G A CDHR2 Silent p.A448A 0.27 TCGA-AD-6895-01 5 176084007 176084007 G - TSPAN17 Intron 0.25 TCGA-AD-6895-01 5 176732997 176732997 T A MXD3 3'Flank 0.33 TCGA-AD-6895-01 5 176935503 176935503 C T DOK3 Missense_Mutation p.G92D 0.32 deleterious(0.03) probably_damaging(0.935) TCGA-AD-6895-01 5 178373410 178373410 G A ZNF454 Nonsense_Mutation p.W28* 0.32 TCGA-AD-6895-01 5 23524478 23524478 A C PRDM9 Missense_Mutation p.N329T 0.35 deleterious(0) benign(0.134) TCGA-AD-6895-01 5 2752293 2752293 G A C5orf38 5'UTR 0.37 TCGA-AD-6895-01 5 32087540 32087540 G A PDZD2 Missense_Mutation p.G1329E 0.26 tolerated(1) benign(0.003) TCGA-AD-6895-01 5 34950377 34950377 A T DNAJC21 Missense_Mutation p.S475C 0.28 deleterious(0.03) possibly_damaging(0.556) TCGA-AD-6895-01 5 37008131 37008131 C T NIPBL Missense_Mutation p.P1421S 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-AD-6895-01 5 37294433 37294433 G A NUP155 Missense_Mutation p.R1310W 0.15 deleterious(0) possibly_damaging(0.556) TCGA-AD-6895-01 5 37307533 37307533 C T NUP155 Silent p.V923V 0.31 TCGA-AD-6895-01 5 38933486 38933486 G A OSMR Silent p.P960P 0.34 TCGA-AD-6895-01 5 40746959 40746959 G A TTC33 Silent p.G54G 0.19 TCGA-AD-6895-01 5 40945395 40945395 G A C7 Silent p.K221K 0.25 TCGA-AD-6895-01 5 488433 488433 C T SLC9A3 Missense_Mutation p.V225M 0.23 deleterious(0) probably_damaging(0.955) TCGA-AD-6895-01 5 52097250 52097252 CCT - PELO In_Frame_Del p.S247del 0.25 TCGA-AD-6895-01 5 54593119 54593119 T - DHX29 Frame_Shift_Del p.K123Nfs*23 0.08 TCGA-AD-6895-01 5 66461181 66461183 CTC - MAST4 In_Frame_Del p.S2060del 0.37 TCGA-AD-6895-01 5 68590648 68590648 C T CCDC125 Missense_Mutation p.R299Q 0.26 tolerated(0.07) benign(0.128) TCGA-AD-6895-01 5 74647128 74647128 C A HMGCR Silent p.R393R 0.39 TCGA-AD-6895-01 5 76645337 76645337 C T PDE8B Missense_Mutation p.R324W 0.28 deleterious(0) probably_damaging(0.981) TCGA-AD-6895-01 5 78415128 78415128 G A BHMT Missense_Mutation p.M71I 0.19 tolerated(0.28) benign(0.001) TCGA-AD-6895-01 5 78752826 78752826 G A HOMER1 Silent p.F7F 0.22 TCGA-AD-6895-01 5 78985730 78985730 G A CMYA5 5'UTR 0.42 TCGA-AD-6895-01 5 79286480 79286480 C T MTX3 Intron 0.30 TCGA-AD-6895-01 5 79732943 79732943 A - ZFYVE16 Frame_Shift_Del p.K148Nfs*14 0.17 TCGA-AD-6895-01 5 82352935 82352935 C G TMEM167A Missense_Mutation p.V63L 0.34 tolerated(0.33) benign(0.002) TCGA-AD-6895-01 5 89703570 89703570 A G CETN3 Silent p.A33A 0.25 TCGA-AD-6895-01 5 90106342 90106342 T - GPR98 Frame_Shift_Del p.Y5091Tfs*7 0.21 TCGA-AD-6895-01 5 92956811 92956811 G A FAM172A Missense_Mutation p.S378F 0.09 deleterious(0) possibly_damaging(0.831) TCGA-AD-6895-01 5 95018615 95018615 T C SPATA9 5'UTR 0.33 TCGA-AD-6895-01 5 95226961 95226961 A G ELL2 Missense_Mutation p.V536A 0.27 tolerated(0.69) benign(0.28) TCGA-AD-6895-01 6 100395740 100395740 C - MCHR2 Frame_Shift_Del p.G97Efs*28 0.21 TCGA-AD-6895-01 6 102074447 102074447 C T GRIK2 Missense_Mutation p.A159V 0.19 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 6 10404789 10404789 G A TFAP2A Missense_Mutation p.S239L 0.21 deleterious(0.01) benign(0.119) TCGA-AD-6895-01 6 105726144 105726144 G - PREP Frame_Shift_Del p.L670Cfs*20 0.17 TCGA-AD-6895-01 6 10687244 10687244 C T C6orf52 Silent p.A75A 0.26 TCGA-AD-6895-01 6 107390747 107390747 C T BEND3 Missense_Mutation p.G550S 0.20 tolerated_low_confidence(0.47) benign(0.004) TCGA-AD-6895-01 6 108496084 108496084 G A NR2E1 Silent p.A72A 0.22 TCGA-AD-6895-01 6 108535825 108535825 A C SNX3 Missense_Mutation p.V87G 0.26 deleterious(0) benign(0.276) TCGA-AD-6895-01 6 108984826 108984826 C A FOXO3 Missense_Mutation p.R264S 0.27 deleterious(0) possibly_damaging(0.782) TCGA-AD-6895-01 6 109691653 109691653 G A CD164 Missense_Mutation p.P130S 0.27 tolerated(0.06) probably_damaging(0.96) TCGA-AD-6895-01 6 109772808 109772808 G A MICAL1 Missense_Mutation p.R310C 0.22 deleterious(0.03) possibly_damaging(0.546) TCGA-AD-6895-01 6 110988657 110988657 A G CDK19 Missense_Mutation p.W146R 0.31 deleterious(0) probably_damaging(0.987) TCGA-AD-6895-01 6 11104272 11104272 C T ERVFRD-1 Silent p.T424T 0.12 TCGA-AD-6895-01 6 111498640 111498640 C T SLC16A10 Silent p.C238C 0.28 TCGA-AD-6895-01 6 112486414 112486414 T A LAMA4 Missense_Mutation p.D539V 0.33 tolerated(0.21) benign(0.008) TCGA-AD-6895-01 6 117622175 117622175 T C ROS1 Missense_Mutation p.E2232G 0.20 tolerated(0.07) benign(0.014) TCGA-AD-6895-01 6 117707012 117707012 T A ROS1 Missense_Mutation p.Y713F 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-AD-6895-01 6 119669822 119669822 C T MAN1A1 Missense_Mutation p.E137K 0.20 tolerated(0.15) possibly_damaging(0.69) TCGA-AD-6895-01 6 126288039 126288039 G A HINT3 Missense_Mutation p.D70N 0.47 deleterious(0.02) benign(0.093) TCGA-AD-6895-01 6 127836978 127836978 T C SOGA3 Missense_Mutation p.Q261R 0.21 deleterious_low_confidence(0) benign(0.069) TCGA-AD-6895-01 6 127837446 127837446 G A SOGA3 Missense_Mutation p.A105V 0.17 tolerated_low_confidence(0.22) possibly_damaging(0.499) TCGA-AD-6895-01 6 128561247 128561247 C T PTPRK Missense_Mutation p.G209E 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 6 129204345 129204345 C T LAMA2 5'UTR 0.16 TCGA-AD-6895-01 6 129813060 129813060 A G LAMA2 Missense_Mutation p.Q2638R 0.38 deleterious(0) probably_damaging(0.981) TCGA-AD-6895-01 6 129929112 129929112 A G ARHGAP18 Missense_Mutation p.L403P 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 6 138192632 138192632 C T TNFAIP3 Missense_Mutation p.R90W 0.27 deleterious(0) probably_damaging(0.982) TCGA-AD-6895-01 6 138745811 138745811 G A NHSL1 Nonsense_Mutation p.R1414* 0.31 TCGA-AD-6895-01 6 144794961 144794961 C A UTRN Missense_Mutation p.Q1058K 0.15 deleterious(0.04) benign(0.089) TCGA-AD-6895-01 6 145079112 145079112 C T UTRN Missense_Mutation p.P2828S 0.29 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 6 145948713 145948713 C T EPM2A Missense_Mutation p.G279S 0.13 tolerated(0.1) probably_damaging(0.991) TCGA-AD-6895-01 6 150266502 150266502 G A ULBP2 Missense_Mutation p.R48Q 0.08 tolerated(0.5) benign(0.007) TCGA-AD-6895-01 6 150387137 150387137 C T ULBP3 Missense_Mutation p.A84T 0.31 tolerated(1) benign(0.152) TCGA-AD-6895-01 6 152751688 152751688 C G SYNE1 Missense_Mutation p.A1540P 0.25 possibly_damaging(0.878) TCGA-AD-6895-01 6 152765686 152765686 C T SYNE1 Missense_Mutation p.D1233N 0.21 possibly_damaging(0.69) TCGA-AD-6895-01 6 153319702 153319702 T A MTRF1L Missense_Mutation p.T108S 0.33 tolerated(0.68) benign(0.065) TCGA-AD-6895-01 6 154771281 154771281 C T CNKSR3 Missense_Mutation p.R55Q 0.41 tolerated(0.05) possibly_damaging(0.672) TCGA-AD-6895-01 6 157522211 157522211 C T ARID1B Missense_Mutation p.R1495C 0.31 probably_damaging(0.997) TCGA-AD-6895-01 6 158925069 158925069 G T TULP4 Silent p.L1458L 0.29 TCGA-AD-6895-01 6 159401919 159401919 G A RSPH3 Missense_Mutation p.T391I 0.25 deleterious(0.02) possibly_damaging(0.893) TCGA-AD-6895-01 6 160482536 160482536 C T IGF2R Silent p.D1088D 0.08 TCGA-AD-6895-01 6 160555066 160555066 G A SLC22A1 Missense_Mutation p.A250T 0.30 deleterious(0) benign(0.054) TCGA-AD-6895-01 6 168466616 168466616 T C FRMD1 Intron 0.08 TCGA-AD-6895-01 6 170103991 170103991 A T C6orf120 3'UTR 0.37 TCGA-AD-6895-01 6 26056036 26056038 CTT - HIST1H1C In_Frame_Del p.K207del 0.42 TCGA-AD-6895-01 6 26225516 26225516 G C HIST1H3E Missense_Mutation p.G45A 0.22 deleterious_low_confidence(0.02) benign(0.07) TCGA-AD-6895-01 6 29275013 29275013 C T OR14J1 Silent p.L183L 0.46 TCGA-AD-6895-01 6 29555755 29555757 CTT - OR2H2 In_Frame_Del p.L13del 0.41 TCGA-AD-6895-01 6 30297230 30297230 C T TRIM39 Missense_Mutation p.H46Y 0.59 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 6 3105936 3105936 G T RIPK1 Missense_Mutation p.E409D 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-AD-6895-01 6 31083919 31083919 A G CDSN Silent p.A491A 0.27 TCGA-AD-6895-01 6 31670675 31670675 G - ABHD16A Intron 0.36 TCGA-AD-6895-01 6 31948431 31948431 G A STK19 Missense_Mutation p.G305E 0.29 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 6 32047096 32047096 G A RNA5SP206 5'Flank 0.27 TCGA-AD-6895-01 6 32812093 32812093 A T PSMB8 5'Flank 0.31 TCGA-AD-6895-01 6 32944478 32944478 G A BRD2 Missense_Mutation p.R322H 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-AD-6895-01 6 33133984 33133984 C A COL11A2 Splice_Site p.X1379_splice 0.40 TCGA-AD-6895-01 6 33169558 33169558 T - SLC39A7 Frame_Shift_Del p.F151Lfs*87 0.10 TCGA-AD-6895-01 6 33170434 33170434 G A SLC39A7 Silent p.G299G 0.28 TCGA-AD-6895-01 6 33263938 33263938 C T RGL2 Missense_Mutation p.R212Q 0.56 tolerated(0.24) benign(0.14) TCGA-AD-6895-01 6 35927506 35927506 A G SLC26A8 Silent p.H572H 0.20 TCGA-AD-6895-01 6 36652020 36652020 C T CDKN1A Nonsense_Mutation p.R48* 0.50 TCGA-AD-6895-01 6 36946353 36946353 C T MTCH1 Silent p.G147G 0.32 TCGA-AD-6895-01 6 37450858 37450858 G A CCDC167 3'UTR 0.30 TCGA-AD-6895-01 6 38834643 38834643 T A DNAH8 Silent p.L2011L 0.26 TCGA-AD-6895-01 6 38950164 38950164 G A DNAH8 Missense_Mutation p.E4076K 0.36 probably_damaging(0.956) TCGA-AD-6895-01 6 39272396 39272396 G A KCNK17 Missense_Mutation p.R130C 0.40 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 6 39290259 39290259 C T KCNK16 Missense_Mutation p.A20T 0.27 deleterious(0.01) benign(0.304) TCGA-AD-6895-01 6 39513390 39513390 C T KIF6 Missense_Mutation p.R419H 0.35 deleterious(0.01) benign(0.191) TCGA-AD-6895-01 6 39864701 39864701 G A DAAM2 Missense_Mutation p.G819R 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 6 40360458 40360458 C T LRFN2 Missense_Mutation p.G532S 0.22 deleterious(0.01) possibly_damaging(0.795) TCGA-AD-6895-01 6 40400471 40400471 G A LRFN2 Missense_Mutation p.H128Y 0.17 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 6 4041058 4041058 G A PRPF4B Missense_Mutation p.G489S 0.49 tolerated(0.55) possibly_damaging(0.862) TCGA-AD-6895-01 6 42147170 42147170 C T GUCA1A 3'UTR 0.38 TCGA-AD-6895-01 6 42231202 42231202 C T TRERF1 Silent p.T580T 0.29 TCGA-AD-6895-01 6 42936685 42936685 C T PEX6 Missense_Mutation p.R469Q 0.42 tolerated(0.47) benign(0.006) TCGA-AD-6895-01 6 43325341 43325341 A G ZNF318 Silent p.S237S 0.25 TCGA-AD-6895-01 6 43489100 43489100 G A POLR1C 3'UTR 0.15 TCGA-AD-6895-01 6 44397615 44397615 G A CDC5L Missense_Mutation p.D687N 0.29 deleterious(0.03) possibly_damaging(0.612) TCGA-AD-6895-01 6 45480098 45480098 G T RUNX2 Silent p.R325R 0.26 TCGA-AD-6895-01 6 45882250 45882250 A T CLIC5 Intron 0.56 TCGA-AD-6895-01 6 50810805 50810805 G A TFAP2B Silent p.K361K 0.21 TCGA-AD-6895-01 6 56391229 56391229 T C DST Missense_Mutation p.Y3397C 0.19 probably_damaging(0.947) TCGA-AD-6895-01 6 65300192 65300192 C T EYS Silent p.R1856R 0.22 TCGA-AD-6895-01 6 70610229 70610229 A G COL19A1 Missense_Mutation p.I89V 0.30 tolerated(0.28) unknown(0) TCGA-AD-6895-01 6 73933346 73933346 A C KHDC1L 3'UTR 0.57 TCGA-AD-6895-01 6 74207538 74207538 A T MTO1 Missense_Mutation p.K652N 0.26 tolerated(0.22) benign(0.149) TCGA-AD-6895-01 6 7580007 7580007 T C DSP Missense_Mutation p.V1195A 0.29 benign(0.054) TCGA-AD-6895-01 6 76369066 76369066 C A SENP6 Silent p.T213T 0.27 TCGA-AD-6895-01 6 83848850 83848850 T C DOPEY1 Missense_Mutation p.Y1697H 0.25 tolerated(0.09) benign(0.061) TCGA-AD-6895-01 6 85454036 85454036 C T TBX18 Missense_Mutation p.R316H 0.27 deleterious(0) possibly_damaging(0.781) TCGA-AD-6895-01 6 89808273 89808273 G A SRSF12 3'UTR 0.30 TCGA-AD-6895-01 6 90331678 90331679 AG - ANKRD6 Frame_Shift_Del p.R280Afs*14 0.35 TCGA-AD-6895-01 6 90402560 90402560 C T MDN1 Missense_Mutation p.V3397M 0.34 possibly_damaging(0.832) TCGA-AD-6895-01 6 91226088 91226088 C A MAP3K7 3'UTR 0.25 TCGA-AD-6895-01 6 96654354 96654354 T A FUT9 3'UTR 0.31 TCGA-AD-6895-01 6 96654644 96654644 T - FUT9 3'UTR 0.35 TCGA-AD-6895-01 6 99374514 99374514 C T FBXL4 Silent p.T117T 0.25 TCGA-AD-6895-01 6 99849342 99849343 - T PNISR Frame_Shift_Ins p.E498Rfs*3 0.24 TCGA-AD-6895-01 6 99894051 99894051 G A USP45 Missense_Mutation p.P533S 0.33 tolerated(0.41) benign(0.167) TCGA-AD-6895-01 7 100082876 100082876 C - NYAP1 5'UTR 0.17 TCGA-AD-6895-01 7 100275032 100275034 CAA - GNB2 In_Frame_Del p.N88del 0.10 TCGA-AD-6895-01 7 100373130 100373130 G A ZAN Missense_Mutation p.R1986H 0.31 unknown(0) TCGA-AD-6895-01 7 100466483 100466483 C - TRIP6 Frame_Shift_Del p.Q245Rfs*4 0.22 TCGA-AD-6895-01 7 100675546 100675546 C T MUC17 Silent p.S283S 0.33 TCGA-AD-6895-01 7 100684395 100684395 C T MUC17 Missense_Mutation p.P3233L 0.25 benign(0.022) TCGA-AD-6895-01 7 100779013 100779013 G A SERPINE1 Missense_Mutation p.V340I 0.33 deleterious(0.04) benign(0.128) TCGA-AD-6895-01 7 101957725 101957725 G A SH2B2 Missense_Mutation p.G457R 0.27 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 7 102100202 102100202 C T ALKBH4 Missense_Mutation p.G57D 0.22 tolerated(0.09) benign(0.009) TCGA-AD-6895-01 7 102110021 102110021 C T LRWD1 Missense_Mutation p.T410M 0.23 deleterious(0) probably_damaging(0.975) TCGA-AD-6895-01 7 102110270 102110270 C T LRWD1 Silent p.A461A 0.29 TCGA-AD-6895-01 7 1024851 1024851 C T CYP2W1 Silent p.T179T 0.27 TCGA-AD-6895-01 7 103061298 103061298 A C SLC26A5 Missense_Mutation p.I60S 0.09 tolerated(0.25) probably_damaging(0.993) TCGA-AD-6895-01 7 103767168 103767168 G T ORC5 3'UTR 0.23 TCGA-AD-6895-01 7 104746087 104746088 - A KMT2E Frame_Shift_Ins p.R802Kfs*8 0.24 TCGA-AD-6895-01 7 105189010 105189010 A G RINT1 Silent p.L283L 0.21 TCGA-AD-6895-01 7 105189015 105189015 C G RINT1 Missense_Mutation p.T285S 0.22 tolerated(0.57) benign(0.002) TCGA-AD-6895-01 7 107204357 107204357 G A COG5 Silent p.N26N 0.36 TCGA-AD-6895-01 7 108155376 108155376 C T PNPLA8 Missense_Mutation p.R187H 0.28 tolerated(0.18) benign(0.001) TCGA-AD-6895-01 7 111509647 111509647 T C DOCK4 Missense_Mutation p.I698V 0.32 deleterious(0.02) benign(0.102) TCGA-AD-6895-01 7 116870023 116870023 A G ST7 Missense_Mutation p.D515G 0.26 unknown(0) TCGA-AD-6895-01 7 120608137 120608137 A G ING3 Missense_Mutation p.T236A 0.24 deleterious(0.03) probably_damaging(0.952) TCGA-AD-6895-01 7 12376803 12376803 T - VWDE Frame_Shift_Del p.S1488Afs*8 0.18 TCGA-AD-6895-01 7 126542726 126542726 A G GRM8 Silent p.D342D 0.22 TCGA-AD-6895-01 7 128477803 128477803 C T FLNC Silent p.T321T 0.21 TCGA-AD-6895-01 7 128492998 128492998 G A FLNC Missense_Mutation p.A2041T 0.25 deleterious(0.01) probably_damaging(1) TCGA-AD-6895-01 7 128529001 128529001 C T KCP RNA 0.29 TCGA-AD-6895-01 7 128630096 128630096 C T TNPO3 Missense_Mutation p.V473I 0.31 tolerated(0.1) benign(0.018) TCGA-AD-6895-01 7 129008221 129008221 G A AHCYL2 Intron 0.26 TCGA-AD-6895-01 7 131190736 131190736 C T PODXL Missense_Mutation p.R457H 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-AD-6895-01 7 132766730 132766730 G - CHCHD3 5'UTR 0.25 TCGA-AD-6895-01 7 133502113 133502113 G C EXOC4 Missense_Mutation p.G517A 0.26 tolerated(0.62) benign(0.004) TCGA-AD-6895-01 7 134221875 134221875 G A AKR1B10 Missense_Mutation p.A209T 0.08 deleterious(0.04) possibly_damaging(0.817) TCGA-AD-6895-01 7 134223684 134223684 C T AKR1B10 Intron 0.19 TCGA-AD-6895-01 7 138554378 138554378 G A KIAA1549 Nonsense_Mutation p.R1561* 0.19 TCGA-AD-6895-01 7 139102373 139102373 G A LUC7L2 Missense_Mutation p.R366H 0.14 tolerated(0.12) unknown(0) TCGA-AD-6895-01 7 140179072 140179072 C T MKRN1 Missense_Mutation p.A25T 0.28 tolerated(0.28) unknown(0) TCGA-AD-6895-01 7 140476881 140476881 G A BRAF Nonsense_Mutation p.R509* 0.25 TCGA-AD-6895-01 7 141756636 141756636 C T MGAM Missense_Mutation p.T1196M 0.21 deleterious(0) possibly_damaging(0.537) TCGA-AD-6895-01 7 142568282 142568282 G T EPHB6 Splice_Site p.X934_splice 0.28 TCGA-AD-6895-01 7 142605797 142605797 G A TRPV5 Silent p.T691T 0.22 TCGA-AD-6895-01 7 142750340 142750340 G T OR6V1 Silent p.G301G 0.17 TCGA-AD-6895-01 7 148767388 148767388 C T ZNF786 3'UTR 0.22 TCGA-AD-6895-01 7 148947604 148947604 C T ZNF212 Missense_Mutation p.R127W 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 7 149481094 149481094 G T SSPO RNA 0.34 TCGA-AD-6895-01 7 150095199 150095199 C T ZNF775 3'UTR 0.25 TCGA-AD-6895-01 7 150417990 150417990 G A GIMAP1 Missense_Mutation p.V300I 0.32 tolerated_low_confidence(0.76) benign(0.002) TCGA-AD-6895-01 7 150773738 150773738 T A FASTK 3'UTR 0.20 TCGA-AD-6895-01 7 151097232 151097232 C T WDR86 Missense_Mutation p.G87R 0.29 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 7 154667715 154667715 C T DPP6 Silent p.D661D 0.30 TCGA-AD-6895-01 7 154875919 154875919 G A HTR5A Missense_Mutation p.V266I 0.17 tolerated(0.24) benign(0.023) TCGA-AD-6895-01 7 15725538 15725538 C T MEOX2 Missense_Mutation p.G164S 0.27 tolerated(1) possibly_damaging(0.862) TCGA-AD-6895-01 7 15725740 15725740 C T MEOX2 Silent p.Q96Q 0.33 TCGA-AD-6895-01 7 16714136 16714136 A G BZW2 Missense_Mutation p.D53G 0.08 deleterious(0) probably_damaging(0.989) TCGA-AD-6895-01 7 18535947 18535947 G T HDAC9 Missense_Mutation p.V8L 0.23 deleterious_low_confidence(0.05) benign(0.228) TCGA-AD-6895-01 7 21630954 21630954 G A DNAH11 Missense_Mutation p.C809Y 0.36 benign(0.022) TCGA-AD-6895-01 7 23240119 23240119 G A NUPL2 Missense_Mutation p.A343T 0.26 tolerated(0.18) benign(0.061) TCGA-AD-6895-01 7 23821096 23821096 G A STK31 Missense_Mutation p.R675H 0.23 deleterious(0.03) benign(0.082) TCGA-AD-6895-01 7 2416637 2416637 A G EIF3B Missense_Mutation p.N694S 0.19 tolerated(0.46) benign(0.352) TCGA-AD-6895-01 7 28848898 28848898 C T CREB5 Missense_Mutation p.P374L 0.29 deleterious(0) unknown(0) TCGA-AD-6895-01 7 28996824 28996824 C T AC005013.5 5'Flank 0.21 TCGA-AD-6895-01 7 32956730 32956730 A G RP9P RNA 0.39 TCGA-AD-6895-01 7 33388731 33388731 G A BBS9 Missense_Mutation p.V461M 0.23 deleterious(0.01) possibly_damaging(0.897) TCGA-AD-6895-01 7 37955717 37955717 G T SFRP4 Silent p.A141A 0.25 TCGA-AD-6895-01 7 38254634 38254634 G A STARD3NL Silent p.L103L 0.12 TCGA-AD-6895-01 7 42005730 42005730 C T GLI3 Missense_Mutation p.D981N 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-AD-6895-01 7 4304782 4304782 G A SDK1 Silent p.A2136A 0.14 TCGA-AD-6895-01 7 44098996 44098996 A G DBNL Silent p.P302P 0.22 TCGA-AD-6895-01 7 4827308 4827308 C T AP5Z1 Missense_Mutation p.A452V 0.18 tolerated(0.13) benign(0.001) TCGA-AD-6895-01 7 53104198 53104198 C T POM121L12 Silent p.C278C 0.38 TCGA-AD-6895-01 7 65579835 65579835 G A CRCP 5'UTR 0.36 TCGA-AD-6895-01 7 66785166 66785166 A - STAG3L4 RNA 0.17 TCGA-AD-6895-01 7 71177084 71177084 C T WBSCR17 Missense_Mutation p.R584C 0.33 deleterious(0) possibly_damaging(0.83) TCGA-AD-6895-01 7 73530226 73530226 A G LIMK1 Missense_Mutation p.D502G 0.26 tolerated(0.05) possibly_damaging(0.738) TCGA-AD-6895-01 7 73535348 73535348 G A LIMK1 Missense_Mutation p.V584M 0.24 deleterious(0.05) probably_damaging(0.979) TCGA-AD-6895-01 7 73768319 73768319 C T CLIP2 Missense_Mutation p.A263V 0.33 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 7 73938437 73938437 T A GTF2IRD1 Missense_Mutation p.I380N 0.19 deleterious(0) possibly_damaging(0.773) TCGA-AD-6895-01 7 75614990 75614990 C T POR Missense_Mutation p.R498W 0.10 tolerated(0.08) benign(0.248) TCGA-AD-6895-01 7 7634642 7634642 G A MIOS Missense_Mutation p.R692K 0.25 tolerated(0.2) probably_damaging(0.91) TCGA-AD-6895-01 7 77569443 77569443 G A PHTF2 Missense_Mutation p.A488T 0.27 tolerated(0.62) benign(0.005) TCGA-AD-6895-01 7 77764356 77764356 G A MAGI2 Missense_Mutation p.R1005C 0.23 deleterious(0.01) benign(0.046) TCGA-AD-6895-01 7 81662216 81662216 T C CACNA2D1 Missense_Mutation p.Y347C 0.30 tolerated(0.17) possibly_damaging(0.51) TCGA-AD-6895-01 7 82582494 82582494 G T PCLO Missense_Mutation p.P2592Q 0.26 unknown(0) TCGA-AD-6895-01 7 82583436 82583436 A T PCLO Missense_Mutation p.V2278E 0.31 unknown(0) TCGA-AD-6895-01 7 86415790 86415790 G A GRM3 Missense_Mutation p.E228K 0.21 deleterious(0) possibly_damaging(0.694) TCGA-AD-6895-01 7 87908604 87908604 C T STEAP4 3'UTR 0.17 TCGA-AD-6895-01 7 89862034 89862034 G A STEAP2 3'UTR 0.33 TCGA-AD-6895-01 7 92761596 92761596 T A SAMD9L Missense_Mutation p.Q1230L 0.24 deleterious(0.05) benign(0.019) TCGA-AD-6895-01 7 92818510 92818510 T C HEPACAM2 3'UTR 0.25 TCGA-AD-6895-01 7 94054441 94054441 C T COL1A2 Missense_Mutation p.P896S 0.27 unknown(0) TCGA-AD-6895-01 7 94139490 94139490 C A CASD1 Missense_Mutation p.L32M 0.33 tolerated(0.2) possibly_damaging(0.601) TCGA-AD-6895-01 7 96639185 96639185 C - DLX6 Frame_Shift_Del p.L238Sfs*55 0.19 TCGA-AD-6895-01 7 97841647 97841647 G A BHLHA15 Missense_Mutation p.R9Q 0.14 tolerated_low_confidence(0.06) probably_damaging(0.978) TCGA-AD-6895-01 7 97851777 97851777 C T TECPR1 Silent p.G995G 0.27 TCGA-AD-6895-01 7 98988798 98988798 C T ARPC1B Intron 0.17 TCGA-AD-6895-01 7 99654732 99654732 G T ZSCAN21 Missense_Mutation p.G35C 0.24 deleterious(0.01) possibly_damaging(0.635) TCGA-AD-6895-01 7 99690596 99690596 A G MCM7 Missense_Mutation p.W707R 0.29 deleterious(0) probably_damaging(0.971) TCGA-AD-6895-01 8 100866442 100866442 G A VPS13B Missense_Mutation p.A3634T 0.25 tolerated(0.07) possibly_damaging(0.499) TCGA-AD-6895-01 8 101084439 101084439 C T RGS22 Missense_Mutation p.G120D 0.18 deleterious(0) probably_damaging(0.972) TCGA-AD-6895-01 8 101733746 101733746 C T PABPC1 Silent p.V22V 0.36 TCGA-AD-6895-01 8 10480500 10480500 C T RP1L1 Missense_Mutation p.R71H 0.30 probably_damaging(1) TCGA-AD-6895-01 8 104927794 104927794 A G RIMS2 Silent p.L628L 0.39 TCGA-AD-6895-01 8 105001543 105001543 G A RIMS2 Missense_Mutation p.E980K 0.23 tolerated_low_confidence(0.8) benign(0.096) TCGA-AD-6895-01 8 105503359 105503359 C A LRP12 Nonsense_Mutation p.G708* 0.30 TCGA-AD-6895-01 8 11301727 11301727 G A FAM167A Missense_Mutation p.A65V 0.32 tolerated(0.29) benign(0.004) TCGA-AD-6895-01 8 113308133 113308133 C T CSMD3 Missense_Mutation p.R2848Q 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-AD-6895-01 8 113702205 113702205 G A CSMD3 Missense_Mutation p.R683C 0.24 deleterious(0) probably_damaging(0.982) TCGA-AD-6895-01 8 114389081 114389081 C T CSMD3 Intron 0.56 TCGA-AD-6895-01 8 114448945 114448945 A G CSMD3 Missense_Mutation p.W47R 0.18 deleterious_low_confidence(0.01) benign(0) TCGA-AD-6895-01 8 117779003 117779003 T C UTP23 Missense_Mutation p.M54T 0.37 tolerated(0.4) benign(0.281) TCGA-AD-6895-01 8 118147564 118147564 G A SLC30A8 5'Flank 0.19 TCGA-AD-6895-01 8 11994917 11994917 G A USP17L2 Silent p.N451N 0.16 TCGA-AD-6895-01 8 121344422 121344422 C T COL14A1 Missense_Mutation p.P1568S 0.21 tolerated(0.13) probably_damaging(1) TCGA-AD-6895-01 8 124140529 124140529 T C TBC1D31 Silent p.F631F 0.25 TCGA-AD-6895-01 8 124238595 124238595 T C ZHX1-C8ORF76 3'UTR 0.31 TCGA-AD-6895-01 8 124267386 124267386 T A ZHX1 Silent p.V267V 0.31 TCGA-AD-6895-01 8 125988724 125988724 C T ZNF572 Missense_Mutation p.P72S 0.23 tolerated(0.66) benign(0.011) TCGA-AD-6895-01 8 126044524 126044524 C T KIAA0196 Silent p.L1098L 0.28 TCGA-AD-6895-01 8 126448512 126448512 C T TRIB1 Silent p.H306H 0.31 TCGA-AD-6895-01 8 127568823 127568823 G A FAM84B Missense_Mutation p.T271M 0.27 tolerated(0.17) benign(0.001) TCGA-AD-6895-01 8 140714976 140714976 G A KCNK9 Missense_Mutation p.A87V 0.24 deleterious(0.03) possibly_damaging(0.754) TCGA-AD-6895-01 8 143623328 143623328 C T BAI1 Missense_Mutation p.R1245C 0.23 deleterious(0.02) possibly_damaging(0.689) TCGA-AD-6895-01 8 143695306 143695306 G A ARC Silent p.V109V 0.43 TCGA-AD-6895-01 8 143816833 143816833 C T THEM6 Silent p.L201L 0.29 TCGA-AD-6895-01 8 144378657 144378657 G A ZNF696 Missense_Mutation p.G271D 0.24 deleterious(0) probably_damaging(0.99) TCGA-AD-6895-01 8 144407649 144407649 C G TOP1MT Missense_Mutation p.D180H 0.21 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 8 144650358 144650358 G A MROH6 Missense_Mutation p.A573V 0.17 tolerated(0.07) probably_damaging(0.941) TCGA-AD-6895-01 8 144660083 144660083 G - NAPRT1 Frame_Shift_Del p.P86Qfs*19 0.20 TCGA-AD-6895-01 8 144899284 144899284 G A PUF60 Silent p.V392V 0.18 TCGA-AD-6895-01 8 144899288 144899288 G A PUF60 Missense_Mutation p.P391L 0.17 tolerated(0.17) benign(0.037) TCGA-AD-6895-01 8 144943092 144943092 C T EPPK1 Missense_Mutation p.D1444N 0.19 benign(0.001) TCGA-AD-6895-01 8 144943164 144943164 G A EPPK1 Missense_Mutation p.R1420C 0.42 benign(0.007) TCGA-AD-6895-01 8 144946586 144946586 C T EPPK1 Missense_Mutation p.R279H 0.26 benign(0.004) TCGA-AD-6895-01 8 145109584 145109584 G C OPLAH Missense_Mutation p.H856D 0.40 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 8 145111607 145111607 G T OPLAH Missense_Mutation p.D586E 0.20 tolerated(0.28) probably_damaging(0.983) TCGA-AD-6895-01 8 145616790 145616790 G T ADCK5 Missense_Mutation p.G270V 0.55 deleterious(0) possibly_damaging(0.71) TCGA-AD-6895-01 8 145625455 145625455 T A CPSF1 Missense_Mutation p.I320F 0.18 deleterious(0.01) possibly_damaging(0.493) TCGA-AD-6895-01 8 145651586 145651586 C T VPS28 Missense_Mutation p.G15R 0.23 tolerated(0.06) possibly_damaging(0.839) TCGA-AD-6895-01 8 145738994 145738994 G A RECQL4 Nonsense_Mutation p.R721* 0.21 TCGA-AD-6895-01 8 145806563 145806563 C T ARHGAP39 Missense_Mutation p.R60H 0.31 tolerated(0.08) probably_damaging(0.977) TCGA-AD-6895-01 8 146107481 146107481 T C ZNF250 Missense_Mutation p.T368A 0.12 tolerated(0.17) benign(0.023) TCGA-AD-6895-01 8 1814739 1814739 C T ARHGEF10 Missense_Mutation p.A198V 0.20 deleterious_low_confidence(0.03) benign(0.238) TCGA-AD-6895-01 8 1846622 1846622 T A ARHGEF10 Missense_Mutation p.D527E 0.23 deleterious(0) probably_damaging(0.984) TCGA-AD-6895-01 8 22006171 22006171 G A LGI3 Silent p.D383D 0.28 TCGA-AD-6895-01 8 22054260 22054260 C - BMP1 Frame_Shift_Del p.N614Tfs*138 0.34 TCGA-AD-6895-01 8 22463333 22463333 G A CCAR2 Missense_Mutation p.R16H 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-AD-6895-01 8 22974231 22974231 A G TNFRSF10C Missense_Mutation p.N156S 0.24 tolerated(0.43) benign(0.011) TCGA-AD-6895-01 8 23021418 23021418 C T TNFRSF10D Missense_Mutation p.A11T 0.17 tolerated(0.19) benign(0.007) TCGA-AD-6895-01 8 23160888 23160888 A T LOXL2 Missense_Mutation p.F635I 0.12 deleterious(0) possibly_damaging(0.834) TCGA-AD-6895-01 8 23306283 23306283 G A ENTPD4 Nonsense_Mutation p.R60* 0.22 TCGA-AD-6895-01 8 23423756 23423756 C T SLC25A37 Missense_Mutation p.P116S 0.26 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 8 23560393 23560393 C T NKX2-6 Silent p.A159A 0.28 TCGA-AD-6895-01 8 23702229 23702229 C T STC1 3'UTR 0.21 TCGA-AD-6895-01 8 26481760 26481760 G A DPYSL2 Missense_Mutation p.V139M 0.29 tolerated(0.1) possibly_damaging(0.537) TCGA-AD-6895-01 8 27462568 27462568 C T CLU Silent p.P234P 0.38 TCGA-AD-6895-01 8 27737230 27737230 C T SCARA5 Missense_Mutation p.E403K 0.25 deleterious(0.01) possibly_damaging(0.713) TCGA-AD-6895-01 8 2857500 2857500 C T CSMD1 Missense_Mutation p.G2728E 0.32 probably_damaging(1) TCGA-AD-6895-01 8 2967758 2967758 G A CSMD1 Missense_Mutation p.T2177M 0.27 benign(0.095) TCGA-AD-6895-01 8 3015423 3015423 G T CSMD1 Nonsense_Mutation p.C1970* 0.22 TCGA-AD-6895-01 8 30209884 30209884 C T TUBBP1 RNA 0.08 TCGA-AD-6895-01 8 3046416 3046416 C T CSMD1 Missense_Mutation p.G1839E 0.32 possibly_damaging(0.821) TCGA-AD-6895-01 8 30694476 30694476 G A TEX15 Silent p.G2725G 0.34 TCGA-AD-6895-01 8 3253834 3253834 G A CSMD1 Silent p.I825I 0.23 TCGA-AD-6895-01 8 3267030 3267030 G A CSMD1 Silent p.C553C 0.26 TCGA-AD-6895-01 8 37620198 37620198 G A PROSC Missense_Mutation p.M7I 0.16 tolerated(0.05) benign(0.055) TCGA-AD-6895-01 8 38133957 38133957 C T WHSC1L1 Missense_Mutation p.R1310Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 8 39782854 39782854 G A IDO1 Missense_Mutation p.D274N 0.11 deleterious(0) probably_damaging(0.998) TCGA-AD-6895-01 8 42022947 42022947 C T AP3M2 Silent p.N224N 0.31 TCGA-AD-6895-01 8 48701562 48701621 TATTTACAGGGGTTTTTGCTAGTTCAGCTCTTACATCATTGCTCCAATCCTGTCAGGGGA ATTTACAGGGGTTTTTGCTAGTTCAGCTCTTACATCATTGCTCCAATCCTGTCAGGGG PRKDC Splice_Site p.X3586_splice 0.11 TCGA-AD-6895-01 8 48887350 48887350 T A MCM4 Silent p.P731P 0.28 TCGA-AD-6895-01 8 52396229 52396229 A G PXDNL Silent p.F166F 0.28 TCGA-AD-6895-01 8 53071514 53071514 G A ST18 Missense_Mutation p.R584C 0.30 deleterious(0) probably_damaging(0.997) TCGA-AD-6895-01 8 53580702 53580702 A T RB1CC1 Missense_Mutation p.I351N 0.25 deleterious(0) possibly_damaging(0.701) TCGA-AD-6895-01 8 54852180 54852180 C T RGS20 Silent p.P185P 0.15 TCGA-AD-6895-01 8 56715035 56715035 G A TGS1 Silent p.K623K 0.26 TCGA-AD-6895-01 8 59059602 59059602 C T FAM110B Silent p.D271D 0.29 TCGA-AD-6895-01 8 61121422 61121422 G A CA8 Silent p.G265G 0.10 TCGA-AD-6895-01 8 61743121 61743121 C T CHD7 Missense_Mutation p.P1255S 0.32 probably_damaging(0.999) TCGA-AD-6895-01 8 67086850 67086850 C A TRIM55 3'UTR 0.21 TCGA-AD-6895-01 8 72755976 72755976 C T MSC Silent p.L146L 0.20 TCGA-AD-6895-01 8 77618141 77618141 C T ZFHX4 Silent p.D606D 0.41 TCGA-AD-6895-01 8 77767692 77767692 G T ZFHX4 Silent p.L2845L 0.26 TCGA-AD-6895-01 8 79717339 79717339 G T IL7 5'UTR 0.38 TCGA-AD-6895-01 8 94747013 94747013 A G RBM12B Silent p.H542H 0.32 TCGA-AD-6895-01 8 95264324 95264324 C T GEM Missense_Mutation p.R179Q 0.19 deleterious(0) possibly_damaging(0.714) TCGA-AD-6895-01 8 95653452 95653452 T G ESRP1 5'UTR 0.42 TCGA-AD-6895-01 8 97274191 97274191 C T PTDSS1 5'UTR 0.30 TCGA-AD-6895-01 8 97892124 97892124 C A CPQ Missense_Mutation p.S247Y 0.34 deleterious(0.03) benign(0.092) TCGA-AD-6895-01 9 100773658 100773658 A G ANP32B Missense_Mutation p.E208G 0.36 tolerated(0.17) unknown(0) TCGA-AD-6895-01 9 101900240 101900240 G A TGFBR1 Missense_Mutation p.R225Q 0.33 tolerated(0.16) probably_damaging(0.99) TCGA-AD-6895-01 9 104190767 104190770 TTTG - ALDOB Frame_Shift_Del p.N120Kfs*32 0.30 TCGA-AD-6895-01 9 104238234 104238234 C T TMEM246 Missense_Mutation p.E381K 0.18 deleterious(0) probably_damaging(0.994) TCGA-AD-6895-01 9 105767561 105767561 T C CYLC2 Silent p.D216D 0.27 TCGA-AD-6895-01 9 106901627 106901627 T - SMC2 3'UTR 0.27 TCGA-AD-6895-01 9 107581905 107581905 C T ABCA1 Missense_Mutation p.R1068H 0.36 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 9 107581923 107581923 C T ABCA1 Missense_Mutation p.G1062D 0.35 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 9 109687813 109687813 A G ZNF462 Silent p.Q540Q 0.08 TCGA-AD-6895-01 9 113137744 113137744 C T SVEP1 Splice_Site p.X3502_splice 0.35 TCGA-AD-6895-01 9 113196613 113196613 C G SVEP1 Intron 0.30 TCGA-AD-6895-01 9 113312146 113312146 C T SVEP1 Missense_Mutation p.R257H 0.19 probably_damaging(1) TCGA-AD-6895-01 9 114090675 114090676 - A OR2K2 Frame_Shift_Ins p.E15Gfs*42 0.23 TCGA-AD-6895-01 9 114188022 114188022 C T KIAA0368 Splice_Site p.X557_splice 0.27 TCGA-AD-6895-01 9 116994116 116994116 C T COL27A1 Silent p.S845S 0.09 TCGA-AD-6895-01 9 117038015 117038015 G C COL27A1 Silent p.G1228G 0.25 TCGA-AD-6895-01 9 117797562 117797562 G T TNC Missense_Mutation p.A1903D 0.33 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 9 119188283 119188283 G A ASTN2 Silent p.R1238R 0.42 TCGA-AD-6895-01 9 119449003 119449003 G C ASTN2 Intron 0.25 TCGA-AD-6895-01 9 123907556 123907556 C T CNTRL Missense_Mutation p.T1068I 0.24 benign(0.197) TCGA-AD-6895-01 9 124535539 124535539 C T DAB2IP Missense_Mutation p.A883V 0.22 tolerated(0.16) possibly_damaging(0.763) TCGA-AD-6895-01 9 125140256 125140256 G A PTGS1 Missense_Mutation p.C58Y 0.21 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 9 127110081 127110081 G A NEK6 Missense_Mutation p.G305R 0.20 tolerated(0.21) benign(0.149) TCGA-AD-6895-01 9 127781175 127781175 C T SCAI Missense_Mutation p.R278H 0.21 deleterious(0) probably_damaging(0.992) TCGA-AD-6895-01 9 129870607 129870607 G A ANGPTL2 Missense_Mutation p.T135M 0.17 deleterious(0.01) probably_damaging(0.941) TCGA-AD-6895-01 9 130265258 130265258 A G LRSAM1 3'UTR 0.27 TCGA-AD-6895-01 9 130570896 130570896 C T FPGS Silent p.T294T 0.33 TCGA-AD-6895-01 9 130925852 130925852 C A C9orf16 Missense_Mutation p.F70L 0.38 tolerated(0.15) benign(0.391) TCGA-AD-6895-01 9 131388953 131388953 A G SPTAN1 Missense_Mutation p.Q2188R 0.27 tolerated(0.1) benign(0.276) TCGA-AD-6895-01 9 131755474 131755474 A G NUP188 Splice_Site p.X881_splice 0.38 TCGA-AD-6895-01 9 132566533 132566533 C T TOR1B Silent p.H127H 0.25 TCGA-AD-6895-01 9 133346869 133346869 C T ASS1 Intron 0.33 TCGA-AD-6895-01 9 133495814 133495814 T A FUBP3 Missense_Mutation p.F247Y 0.23 tolerated(0.79) benign(0.003) TCGA-AD-6895-01 9 133511424 133511424 C T FUBP3 Missense_Mutation p.P541S 0.36 deleterious(0.02) possibly_damaging(0.885) TCGA-AD-6895-01 9 135042407 135042407 C - NTNG2 Frame_Shift_Del p.P65Lfs*69 0.20 TCGA-AD-6895-01 9 135413041 135413041 T C C9orf171 Missense_Mutation p.V229A 0.31 deleterious(0.04) benign(0.187) TCGA-AD-6895-01 9 135763841 135763841 C T C9orf9 Intron 0.30 TCGA-AD-6895-01 9 135944144 135944144 C T CEL Silent p.A330A 0.10 TCGA-AD-6895-01 9 136131491 136131491 G A RP11-430N14.4 5'Flank 0.17 TCGA-AD-6895-01 9 137619120 137619120 C G COL5A1 Missense_Mutation p.I221M 0.33 probably_damaging(0.998) TCGA-AD-6895-01 9 137979834 137979834 C T OLFM1 Intron 0.42 TCGA-AD-6895-01 9 138376530 138376530 G A PPP1R26 Silent p.G58G 0.40 TCGA-AD-6895-01 9 138376710 138376710 G A PPP1R26 Silent p.P118P 0.36 TCGA-AD-6895-01 9 139301821 139301821 C T SDCCAG3 Missense_Mutation p.E199K 0.24 tolerated(0.51) benign(0.003) TCGA-AD-6895-01 9 139730343 139730343 C T RABL6 Intron 0.28 TCGA-AD-6895-01 9 139849827 139849827 G A LCN12 Nonsense_Mutation p.W185* 0.28 TCGA-AD-6895-01 9 139909886 139909886 G A ABCA2 Missense_Mutation p.A1226V 0.24 tolerated(0.46) benign(0.059) TCGA-AD-6895-01 9 139910919 139910919 C T ABCA2 Silent p.E976E 0.41 TCGA-AD-6895-01 9 139974454 139974454 G A UAP1L1 Silent p.R346R 0.24 TCGA-AD-6895-01 9 140137041 140137041 C T TUBB4B Missense_Mutation p.A124V 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.7) TCGA-AD-6895-01 9 140327678 140327678 C A NOXA1 Missense_Mutation p.P291H 0.19 deleterious(0.01) probably_damaging(0.946) TCGA-AD-6895-01 9 140865931 140865931 G A CACNA1B Missense_Mutation p.R477H 0.21 tolerated(0.25) benign(0.065) TCGA-AD-6895-01 9 14776045 14776045 G A FREM1 Silent p.T1533T 0.25 TCGA-AD-6895-01 9 17761458 17761458 T A SH3GL2 Silent p.A46A 0.29 TCGA-AD-6895-01 9 19786013 19786013 G A SLC24A2 Silent p.V284V 0.24 TCGA-AD-6895-01 9 21974677 21974677 C T CDKN2A Silent p.Q50Q 0.32 TCGA-AD-6895-01 9 26910389 26910392 AAAT - PLAA Frame_Shift_Del p.Y534Sfs*18 0.26 TCGA-AD-6895-01 9 33030444 33030444 G A DNAJA1 Missense_Mutation p.G141E 0.27 deleterious(0) probably_damaging(0.99) TCGA-AD-6895-01 9 33462049 33462049 C T NOL6 3'UTR 0.28 TCGA-AD-6895-01 9 33675326 33675326 T C PTENP1 RNA 0.15 TCGA-AD-6895-01 9 33675405 33675405 C T PTENP1 RNA 0.20 TCGA-AD-6895-01 9 3395481 3395481 T A RFX3 Silent p.V36V 0.25 TCGA-AD-6895-01 9 36108009 36108009 G A RECK Missense_Mutation p.R538H 0.22 tolerated(0.14) benign(0.007) TCGA-AD-6895-01 9 37034103 37034103 T C PAX5 5'UTR 0.31 TCGA-AD-6895-01 9 37441262 37441264 ATC - ZBTB5 In_Frame_Del p.D429del 0.25 TCGA-AD-6895-01 9 39361041 39361041 T A SPATA31A1 Nonsense_Mutation p.C1093* 0.48 TCGA-AD-6895-01 9 39361330 39361331 - A SPATA31A1 Frame_Shift_Ins p.T1192Nfs*14 0.50 TCGA-AD-6895-01 9 3937058 3937058 G A GLIS3 Silent p.R614R 0.27 TCGA-AD-6895-01 9 6565389 6565389 C A GLDC Missense_Mutation p.A631S 0.13 tolerated(0.22) benign(0.168) TCGA-AD-6895-01 9 75526981 75526981 C T ALDH1A1 Missense_Mutation p.G365R 0.40 deleterious(0) probably_damaging(0.938) TCGA-AD-6895-01 9 75543859 75543859 G A ALDH1A1 Missense_Mutation p.R131C 0.27 deleterious(0) probably_damaging(0.939) TCGA-AD-6895-01 9 77390897 77390897 G T TRPM6 Missense_Mutation p.P1102H 0.34 deleterious(0.01) benign(0.349) TCGA-AD-6895-01 9 77473602 77473602 G C TRPM6 Missense_Mutation p.S32R 0.23 deleterious(0) possibly_damaging(0.786) TCGA-AD-6895-01 9 79635004 79635004 A C FOXB2 Missense_Mutation p.H145P 0.38 deleterious_low_confidence(0.05) unknown(0) TCGA-AD-6895-01 9 79635358 79635358 C T FOXB2 Missense_Mutation p.T263M 0.27 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-AD-6895-01 9 79938134 79938134 C T VPS13A Silent p.S1994S 0.30 TCGA-AD-6895-01 9 80919676 80919677 - T PSAT1 Frame_Shift_Ins p.L75Sfs*26 0.31 TCGA-AD-6895-01 9 84547410 84547410 A - RP11-383M4.6 Intron 0.16 TCGA-AD-6895-01 9 87635142 87635142 C T NTRK2 Missense_Mutation p.P732S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6895-01 9 91926199 91926199 G C CKS2 5'UTR 0.16 TCGA-AD-6895-01 9 94519695 94519695 G A ROR2 Missense_Mutation p.R108W 0.29 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 9 94809924 94809924 A C SPTLC1 Missense_Mutation p.C319G 0.24 deleterious(0) probably_damaging(0.978) TCGA-AD-6895-01 9 96418259 96418259 C T PHF2 Silent p.F332F 0.22 TCGA-AD-6895-01 9 96860644 96860644 C A PTPDC1 Missense_Mutation p.P597H 0.25 tolerated(0.58) benign(0.003) TCGA-AD-6895-01 9 97869544 97869544 A T FANCC Missense_Mutation p.V446E 0.26 tolerated(0.06) possibly_damaging(0.773) TCGA-AD-6895-01 9 98718273 98718273 A G ERCC6L2 Missense_Mutation p.Y653C 0.31 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 X 100667857 100667857 G - HNRNPH2 Frame_Shift_Del p.L296Yfs*20 0.33 TCGA-AD-6895-01 X 10422949 10422949 C T MID1 Missense_Mutation p.G539D 0.48 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 X 10437807 10437807 G A MID1 Silent p.S405S 0.65 TCGA-AD-6895-01 X 106466042 106466042 T G PIH1D3 Missense_Mutation p.S134A 0.51 tolerated(0.09) benign(0.012) TCGA-AD-6895-01 X 107911660 107911660 C T COL4A5 Missense_Mutation p.P1239L 0.49 unknown(0) TCGA-AD-6895-01 X 107911672 107911672 C T COL4A5 Missense_Mutation p.P1243L 0.49 unknown(0) TCGA-AD-6895-01 X 111155847 111155847 C T TRPC5 Missense_Mutation p.R191H 0.80 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 X 113949651 113949651 G C HTR2C Intron 0.47 TCGA-AD-6895-01 X 117959821 117959821 G A ZCCHC12 Missense_Mutation p.R205Q 0.53 tolerated(0.53) benign(0.007) TCGA-AD-6895-01 X 118678358 118678358 C T CXorf56 Silent p.G127G 0.64 TCGA-AD-6895-01 X 120181943 120181943 C A GLUD2 Nonsense_Mutation p.Y135* 0.53 TCGA-AD-6895-01 X 123518289 123518289 C T TENM1 Silent p.G2164G 0.50 TCGA-AD-6895-01 X 129055690 129055690 C T UTP14A Intron 0.38 TCGA-AD-6895-01 X 129148242 129148242 G T BCORL1 Missense_Mutation p.E498D 0.65 benign(0.079) TCGA-AD-6895-01 X 129263995 129263995 C T AIFM1 Missense_Mutation p.V574M 0.68 deleterious(0) probably_damaging(0.956) TCGA-AD-6895-01 X 135757248 135757248 A G ARHGEF6 Silent p.A651A 0.57 TCGA-AD-6895-01 X 13734198 13734198 A T TRAPPC2 Missense_Mutation p.F117L 0.54 tolerated(0.08) possibly_damaging(0.55) TCGA-AD-6895-01 X 1407724 1407724 C T CSF2RA Missense_Mutation p.A139V 0.30 deleterious(0.01) possibly_damaging(0.876) TCGA-AD-6895-01 X 142967300 142967300 G A UBE2NL Missense_Mutation p.R33H 0.47 tolerated(0.16) benign(0.109) TCGA-AD-6895-01 X 147010268 147010268 C T FMR1 Missense_Mutation p.A121V 0.48 tolerated(1) benign(0.027) TCGA-AD-6895-01 X 148796198 148796198 C A MAGEA11 Missense_Mutation p.P52T 0.57 tolerated_low_confidence(0.11) possibly_damaging(0.908) TCGA-AD-6895-01 X 149828207 149828207 G A MTM1 Missense_Mutation p.C444Y 0.54 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 X 149963935 149963935 G A CD99L2 Missense_Mutation p.T101M 0.19 deleterious(0) probably_damaging(0.999) TCGA-AD-6895-01 X 152615004 152615004 C A ZNF275 3'UTR 0.61 TCGA-AD-6895-01 X 153041816 153041816 C T PLXNB3 Missense_Mutation p.R1602C 0.60 deleterious(0) probably_damaging(0.971) TCGA-AD-6895-01 X 153128276 153128276 C T L1CAM Missense_Mutation p.D1206N 0.49 deleterious(0.04) probably_damaging(1) TCGA-AD-6895-01 X 154090100 154090100 C T F8 Missense_Mutation p.D2206N 0.40 tolerated(0.16) probably_damaging(0.999) TCGA-AD-6895-01 X 15415586 15415586 G A PIR Silent p.V226V 0.15 TCGA-AD-6895-01 X 22112104 22112104 C T PHEX Missense_Mutation p.R246W 0.52 deleterious(0) probably_damaging(1) TCGA-AD-6895-01 X 30877722 30877722 G A TAB3 5'UTR 0.16 TCGA-AD-6895-01 X 3241354 3241354 C T MXRA5 Missense_Mutation p.R791H 0.13 deleterious(0) possibly_damaging(0.886) TCGA-AD-6895-01 X 32613995 32613995 T C DMD Splice_Site p.X495_splice 0.55 TCGA-AD-6895-01 X 35990026 35990026 A - CXorf22 Frame_Shift_Del p.K734Nfs*6 0.11 TCGA-AD-6895-01 X 36103602 36103602 A C CHDC2 Missense_Mutation p.E196D 0.10 deleterious(0.04) possibly_damaging(0.601) TCGA-AD-6895-01 X 36319194 36319194 T A CXorf30 Missense_Mutation p.F70I 0.55 deleterious(0) probably_damaging(0.996) TCGA-AD-6895-01 X 37027582 37027582 C T FAM47C Missense_Mutation p.R367C 0.50 deleterious(0) benign(0.03) TCGA-AD-6895-01 X 37699854 37699854 C T DYNLT3 Missense_Mutation p.V109I 0.18 tolerated(0.07) probably_damaging(0.995) TCGA-AD-6895-01 X 38262943 38262943 A G OTC Missense_Mutation p.M205V 0.59 deleterious(0.04) benign(0.264) TCGA-AD-6895-01 X 39933575 39933575 G A BCOR Nonsense_Mutation p.R342* 0.62 TCGA-AD-6895-01 X 46466593 46466593 C T SLC9A7 Missense_Mutation p.E658K 0.81 deleterious(0.02) benign(0.075) TCGA-AD-6895-01 X 47272585 47272585 A G ZNF157 Silent p.S371S 0.57 TCGA-AD-6895-01 X 48460474 48460474 G A WDR13 Missense_Mutation p.R345H 0.54 deleterious(0) probably_damaging(0.957) TCGA-AD-6895-01 X 48771540 48771540 G A PIM2 Silent p.A268A 0.65 TCGA-AD-6895-01 X 49031025 49031025 C T PLP2 Silent p.P147P 0.57 TCGA-AD-6895-01 X 49142862 49142862 C A PPP1R3F Silent p.T570T 0.50 TCGA-AD-6895-01 X 49646963 49646963 A G USP27X 3'UTR 0.32 TCGA-AD-6895-01 X 50053686 50053686 T C CCNB3 Silent p.T839T 0.19 TCGA-AD-6895-01 X 50213048 50213048 C T DGKK RNA 0.51 TCGA-AD-6895-01 X 51075979 51075979 C T NUDT10 Silent p.P54P 0.49 TCGA-AD-6895-01 X 53106508 53106508 C T GPR173 Silent p.P235P 0.30 TCGA-AD-6895-01 X 53571521 53571521 C A HUWE1 Missense_Mutation p.G3751C 0.57 unknown(0) TCGA-AD-6895-01 X 54263467 54263467 G T WNK3 Nonsense_Mutation p.S1511* 0.47 TCGA-AD-6895-01 X 54784766 54784766 C T ITIH6 Missense_Mutation p.D581N 0.16 tolerated(0.06) possibly_damaging(0.786) TCGA-AD-6895-01 X 55753777 55753777 T A RRAGB Missense_Mutation p.S88R 0.50 tolerated_low_confidence(0.07) benign(0.008) TCGA-AD-6895-01 X 57621250 57621251 - C ZXDB 3'UTR 0.42 TCGA-AD-6895-01 X 63412124 63412124 C - AMER1 Frame_Shift_Del p.G348Afs*16 0.36 TCGA-AD-6895-01 X 63412524 63412524 G A AMER1 Missense_Mutation p.P215S 0.56 tolerated(0.61) benign(0.007) TCGA-AD-6895-01 X 69282830 69282830 C T OTUD6A Silent p.C152C 0.58 TCGA-AD-6895-01 X 71426551 71426551 T A ERCC6L Missense_Mutation p.D689V 0.49 deleterious(0.02) benign(0.021) TCGA-AD-6895-01 X 79283568 79283568 C T TBX22 Silent p.D314D 0.59 TCGA-AD-6895-01 X 79948464 79948464 T A BRWD3 Missense_Mutation p.S1080C 0.40 deleterious(0) probably_damaging(0.993) TCGA-AD-6895-01 X 91131784 91131784 A - PCDH11X Frame_Shift_Del p.N183Tfs*19 0.31 TCGA-AD-6895-01 Y 14922685 14922685 G A USP9Y Missense_Mutation p.G1391S 0.22 tolerated(1) benign(0) TCGA-AD-6895-01 Y 15027677 15027677 G A DDX3Y Silent p.K385K 0.54 TCGA-AD-6899-01 10 102850251 102850251 G A TLX1NB 5'UTR 0.41 TCGA-AD-6899-01 10 115384633 115384633 G A NRAP Silent p.D767D 0.18 TCGA-AD-6899-01 10 118138975 118138975 G T CCDC172 3'UTR 0.19 TCGA-AD-6899-01 10 118434690 118434690 G A HSPA12A Missense_Mutation p.R544C 0.28 deleterious(0) probably_damaging(0.931) TCGA-AD-6899-01 10 124358363 124358363 C G DMBT1 Nonsense_Mutation p.Y1010* 0.37 TCGA-AD-6899-01 10 131762046 131762046 G T EBF3 5'UTR 0.15 TCGA-AD-6899-01 10 26446411 26446411 C - MYO3A Frame_Shift_Del p.H990Ifs*9 0.20 TCGA-AD-6899-01 10 64567220 64567220 C T ADO 3'UTR 0.17 TCGA-AD-6899-01 10 74644119 74644119 A G MCU Silent p.Q319Q 0.11 TCGA-AD-6899-01 10 76865590 76865590 C T DUSP13 Intron 0.09 TCGA-AD-6899-01 11 108224583 108224583 C T ATM Missense_Mutation p.T2921M 0.44 deleterious(0) probably_damaging(0.995) TCGA-AD-6899-01 11 111250111 111250111 G A POU2AF1 5'UTR 0.25 TCGA-AD-6899-01 11 280823 280823 G A NLRP6 Silent p.R363R 0.21 TCGA-AD-6899-01 11 46389290 46389290 G A DGKZ Missense_Mutation p.R309K 0.37 tolerated(1) benign(0.001) TCGA-AD-6899-01 11 47397252 47397252 G A SPI1 Missense_Mutation p.T26M 0.22 tolerated(0.14) possibly_damaging(0.548) TCGA-AD-6899-01 11 51515622 51515622 C A OR4C46 Missense_Mutation p.T114N 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-AD-6899-01 11 5410952 5410952 G A OR51M1 Silent p.A108A 0.10 TCGA-AD-6899-01 11 55653081 55653081 G A TRIM51 Silent p.T59T 0.09 TCGA-AD-6899-01 11 59245059 59245059 T C OR4D10 Missense_Mutation p.S53P 0.22 tolerated(0.57) benign(0.005) TCGA-AD-6899-01 11 67208981 67208981 G A CORO1B Silent p.C153C 0.50 TCGA-AD-6899-01 11 87024485 87024485 C T TMEM135 Missense_Mutation p.R319C 0.11 deleterious(0) possibly_damaging(0.891) TCGA-AD-6899-01 11 94352937 94352937 C T PIWIL4 Missense_Mutation p.S727L 0.37 deleterious(0) benign(0.36) TCGA-AD-6899-01 12 103234225 103234225 A G PAH Missense_Mutation p.V423A 0.34 deleterious(0.01) benign(0.059) TCGA-AD-6899-01 12 104077060 104077060 C T STAB2 Silent p.T961T 0.08 TCGA-AD-6899-01 12 123281894 123281894 G A CCDC62 Silent p.A271A 0.23 TCGA-AD-6899-01 12 18836249 18836249 C T PLCZ1 Missense_Mutation p.R584H 0.26 tolerated(1) benign(0.004) TCGA-AD-6899-01 12 2711120 2711120 G T CACNA1C Missense_Mutation p.G1005V 0.35 tolerated(0.09) benign(0.176) TCGA-AD-6899-01 12 40757342 40757342 C T LRRK2 Silent p.C2389C 0.24 TCGA-AD-6899-01 12 51890906 51890906 G A SLC4A8 Missense_Mutation p.E1027K 0.19 tolerated(0.1) probably_damaging(0.956) TCGA-AD-6899-01 12 52771925 52771925 C T KRT84 Missense_Mutation p.V566I 0.31 tolerated_low_confidence(0.41) benign(0.002) TCGA-AD-6899-01 12 69158642 69158642 G A SLC35E3 Missense_Mutation p.S305N 0.13 tolerated(0.44) benign(0.001) TCGA-AD-6899-01 12 6964971 6964971 C T USP5 Missense_Mutation p.T97M 0.12 deleterious(0) benign(0.359) TCGA-AD-6899-01 12 8926162 8926162 C T RIMKLB Missense_Mutation p.R315C 0.23 deleterious_low_confidence(0) possibly_damaging(0.772) TCGA-AD-6899-01 12 95422203 95422203 G A NR2C1 Silent p.Y497Y 0.26 TCGA-AD-6899-01 13 28578214 28578214 G A FLT3 Missense_Mutation p.P986L 0.42 deleterious_low_confidence(0.04) benign(0.002) TCGA-AD-6899-01 13 36700031 36700031 G A DCLK1 Nonsense_Mutation p.R82* 0.11 TCGA-AD-6899-01 13 46288214 46288214 G A SPERT Missense_Mutation p.G352S 0.36 tolerated(0.64) benign(0.015) TCGA-AD-6899-01 13 53049257 53049257 A G CKAP2 Missense_Mutation p.Y678C 0.27 tolerated(0.13) benign(0.01) TCGA-AD-6899-01 13 60545113 60545113 G A DIAPH3 Missense_Mutation p.P611L 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-AD-6899-01 13 94958372 94958372 C T GPC6 Missense_Mutation p.R383W 0.35 deleterious(0) probably_damaging(0.985) TCGA-AD-6899-01 14 100615479 100615479 G A DEGS2 Silent p.F217F 0.13 TCGA-AD-6899-01 14 23523861 23523861 G A CDH24 Missense_Mutation p.P213L 0.16 tolerated(0.07) probably_damaging(1) TCGA-AD-6899-01 14 26917729 26917729 A C NOVA1 Missense_Mutation p.N320K 0.12 deleterious(0.02) possibly_damaging(0.607) TCGA-AD-6899-01 14 32563404 32563404 G A ARHGAP5 Missense_Mutation p.D1177N 0.09 deleterious(0.04) benign(0.178) TCGA-AD-6899-01 14 58949270 58949270 A T KIAA0586 Missense_Mutation p.D1048V 0.28 deleterious(0) probably_damaging(0.964) TCGA-AD-6899-01 14 61190422 61190422 C T SIX4 Missense_Mutation p.G124D 0.31 deleterious(0) probably_damaging(0.986) TCGA-AD-6899-01 15 23931923 23931923 C T NDN Missense_Mutation p.A148T 0.18 tolerated(0.1) probably_damaging(0.999) TCGA-AD-6899-01 15 34153331 34153331 A G RYR3 Missense_Mutation p.H4806R 0.37 possibly_damaging(0.765) TCGA-AD-6899-01 15 57565459 57565459 A G TCF12 Silent p.R659R 0.41 TCGA-AD-6899-01 15 90454031 90454031 T C C15orf38-AP3S2 Missense_Mutation p.E38G 0.10 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-AD-6899-01 15 90808965 90808965 C T NGRN Silent p.L7L 0.18 TCGA-AD-6899-01 15 93588310 93588310 G A RGMA Missense_Mutation p.A432V 0.64 deleterious(0.04) unknown(0) TCGA-AD-6899-01 16 14334369 14334369 C T MKL2 Intron 0.07 TCGA-AD-6899-01 16 20548586 20548586 C T ACSM2B Silent p.A576A 0.12 TCGA-AD-6899-01 16 46764540 46764540 C T MYLK3 Silent p.A511A 0.55 TCGA-AD-6899-01 16 67919692 67919692 C T NRN1L Silent p.F49F 0.08 TCGA-AD-6899-01 16 70884426 70884426 C A HYDIN Missense_Mutation p.E4192D 0.18 possibly_damaging(0.801) TCGA-AD-6899-01 16 71674757 71674757 G A MARVELD3 Missense_Mutation p.A354T 0.12 tolerated(0.43) possibly_damaging(0.545) TCGA-AD-6899-01 16 7383011 7383011 G A RBFOX1 Silent p.A3A 0.26 TCGA-AD-6899-01 16 7637261 7637261 A G RBFOX1 Missense_Mutation p.I163V 0.19 tolerated(0.05) benign(0.239) TCGA-AD-6899-01 16 81164172 81164172 G A PKD1L2 RNA 0.44 TCGA-AD-6899-01 17 10304037 10304037 C T MYH8 Silent p.A1135A 0.58 TCGA-AD-6899-01 17 11998898 11998898 C T MAP2K4 Missense_Mutation p.R134W 0.11 deleterious(0) benign(0.115) TCGA-AD-6899-01 17 36093776 36093776 C T HNF1B Missense_Mutation p.D195N 0.59 tolerated(0.16) benign(0.358) TCGA-AD-6899-01 17 36093778 36093778 G C HNF1B Missense_Mutation p.T194R 0.57 tolerated(0.2) benign(0.265) TCGA-AD-6899-01 17 37319045 37319045 C T ARL5C Silent p.P58P 0.10 TCGA-AD-6899-01 17 38978371 38978371 C T KRT10 Missense_Mutation p.R156H 0.52 deleterious(0) probably_damaging(0.999) TCGA-AD-6899-01 17 49059988 49059988 C T SPAG9 Missense_Mutation p.R1045Q 0.71 deleterious(0.02) possibly_damaging(0.474) TCGA-AD-6899-01 17 72352924 72352924 C T BTBD17 Missense_Mutation p.E437K 0.59 deleterious(0) possibly_damaging(0.851) TCGA-AD-6899-01 17 74019681 74019681 G A EVPL Missense_Mutation p.R85C 0.19 tolerated(0.05) benign(0.026) TCGA-AD-6899-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.67 deleterious(0) probably_damaging(0.997) TCGA-AD-6899-01 18 14848862 14848862 C T ANKRD30B Missense_Mutation p.A991V 0.42 deleterious(0.05) benign(0.034) TCGA-AD-6899-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.13 deleterious(0.03) probably_damaging(1) TCGA-AD-6899-01 18 48604787 48604787 G C SMAD4 Missense_Mutation p.D537H 0.23 deleterious(0) probably_damaging(1) TCGA-AD-6899-01 19 11849702 11849702 G A ZNF823 5'UTR 0.37 TCGA-AD-6899-01 19 17837716 17837716 G A MAP1S Missense_Mutation p.R508Q 0.17 tolerated(0.34) probably_damaging(0.99) TCGA-AD-6899-01 19 2717757 2717757 G A DIRAS1 Silent p.G16G 0.31 TCGA-AD-6899-01 19 30499972 30499972 A T URI1 Missense_Mutation p.E249D 0.35 tolerated(0.11) benign(0.224) TCGA-AD-6899-01 19 31767496 31767496 G A TSHZ3 Missense_Mutation p.P1068L 0.43 deleterious(0) probably_damaging(0.999) TCGA-AD-6899-01 19 31770444 31770444 C T TSHZ3 Missense_Mutation p.M85I 0.06 tolerated(0.11) benign(0.042) TCGA-AD-6899-01 19 37642882 37642882 C G ZNF585A Missense_Mutation p.G585A 0.34 deleterious(0) probably_damaging(0.998) TCGA-AD-6899-01 19 47587652 47587652 T C ZC3H4 Missense_Mutation p.K390E 0.16 unknown(0) TCGA-AD-6899-01 19 47984287 47984287 G C KPTN Silent p.V151V 0.09 TCGA-AD-6899-01 19 50062175 50062177 CTT - NOSIP In_Frame_Del p.K79del 0.42 TCGA-AD-6899-01 19 52619509 52619509 C T ZNF616 Missense_Mutation p.G303E 0.14 deleterious(0) probably_damaging(0.99) TCGA-AD-6899-01 19 53086084 53086084 C A ZNF701 Missense_Mutation p.L324I 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-AD-6899-01 19 55046981 55046981 G A KIR3DX1 Missense_Mutation p.V176I 0.46 tolerated(0.3) possibly_damaging(0.613) TCGA-AD-6899-01 19 5783214 5783214 G A PRR22 Silent p.T348T 0.20 TCGA-AD-6899-01 19 7927911 7927911 G A EVI5L Silent p.A667A 0.38 TCGA-AD-6899-01 19 9524594 9524594 G A ZNF266 Missense_Mutation p.S336F 0.33 deleterious(0.03) benign(0.06) TCGA-AD-6899-01 1 1022568 1022568 C T C1orf159 Silent p.A87A 0.50 TCGA-AD-6899-01 1 10689898 10689898 G T PEX14 Nonsense_Mutation p.E330* 0.33 TCGA-AD-6899-01 1 107867369 107867369 C T NTNG1 Missense_Mutation p.R238C 0.33 deleterious(0.01) probably_damaging(0.92) TCGA-AD-6899-01 1 145414756 145414756 C T HFE2 5'UTR 0.21 TCGA-AD-6899-01 1 147380309 147380309 G A GJA8 Missense_Mutation p.R76H 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-AD-6899-01 1 149783896 149783896 G C HIST2H2BF 5'UTR 0.40 TCGA-AD-6899-01 1 151823624 151823624 T G THEM5 Missense_Mutation p.E123D 0.29 tolerated(0.5) benign(0.038) TCGA-AD-6899-01 1 156641686 156641686 C T NES Missense_Mutation p.R765Q 0.45 tolerated(0.12) benign(0.001) TCGA-AD-6899-01 1 160000112 160000112 G A PIGM 3'UTR 0.53 TCGA-AD-6899-01 1 161176280 161176280 C T NDUFS2 Nonsense_Mutation p.R96* 0.27 TCGA-AD-6899-01 1 162469947 162469947 G A UHMK1 Silent p.A157A 0.13 TCGA-AD-6899-01 1 175304922 175304922 C T TNR Missense_Mutation p.G1186S 0.06 deleterious(0) probably_damaging(1) TCGA-AD-6899-01 1 206626644 206626644 C T SRGAP2 Missense_Mutation p.R674W 0.16 deleterious(0) probably_damaging(0.998) TCGA-AD-6899-01 1 235860531 235860531 G A LYST Silent p.Y3472Y 0.45 TCGA-AD-6899-01 1 23696191 23696191 C T C1orf213 3'UTR 0.35 TCGA-AD-6899-01 1 23696209 23696209 C T C1orf213 3'UTR 0.42 TCGA-AD-6899-01 1 27333202 27333202 C G FAM46B Missense_Mutation p.E171Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-AD-6899-01 1 3350436 3350436 C T PRDM16 3'UTR 0.50 TCGA-AD-6899-01 1 35579069 35579069 G C ZMYM1 Missense_Mutation p.Q546H 0.25 deleterious(0.03) possibly_damaging(0.83) TCGA-AD-6899-01 1 39797137 39797137 C T MACF1 Intron 0.27 TCGA-AD-6899-01 1 46661486 46661486 G C POMGNT1 Silent p.V177V 0.10 TCGA-AD-6899-01 1 57383376 57383376 C T C8A Missense_Mutation p.T581M 0.33 deleterious(0) probably_damaging(0.973) TCGA-AD-6899-01 1 93682289 93682289 G C CCDC18 Missense_Mutation p.E659Q 0.16 deleterious(0) probably_damaging(0.99) TCGA-AD-6899-01 20 36031742 36031742 C T SRC Missense_Mutation p.T524M 0.18 deleterious(0.01) possibly_damaging(0.726) TCGA-AD-6899-01 20 3641213 3641213 G A GFRA4 Silent p.C229C 0.18 TCGA-AD-6899-01 20 36687855 36687855 T G RPRD1B Silent p.T196T 0.15 TCGA-AD-6899-01 20 44644925 44644925 G A MMP9 Missense_Mutation p.R681H 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-6899-01 20 45192179 45192179 C G SLC13A3 Silent p.L502L 0.14 TCGA-AD-6899-01 21 22906869 22906869 C A NCAM2 Nonsense_Mutation p.S765* 0.15 TCGA-AD-6899-01 21 31869220 31869220 G A KRTAP19-4 Missense_Mutation p.T70M 0.26 deleterious_low_confidence(0.04) unknown(0) TCGA-AD-6899-01 21 41741083 41741083 G A DSCAM Missense_Mutation p.R200W 0.58 deleterious(0.03) probably_damaging(0.992) TCGA-AD-6899-01 21 47703711 47703711 C T MCM3AP Missense_Mutation p.E421K 0.15 tolerated(0.13) benign(0.247) TCGA-AD-6899-01 2 118743565 118743565 A G CCDC93 Silent p.A200A 0.23 TCGA-AD-6899-01 2 118743566 118743566 G C CCDC93 Missense_Mutation p.A200G 0.23 tolerated(0.24) benign(0.005) TCGA-AD-6899-01 2 133543187 133543187 G T NCKAP5 Missense_Mutation p.S399R 0.39 deleterious(0) possibly_damaging(0.76) TCGA-AD-6899-01 2 165802218 165802218 C T SLC38A11 Silent p.L27L 0.13 TCGA-AD-6899-01 2 166245738 166245738 G A SCN2A Missense_Mutation p.D1808N 0.07 deleterious(0.02) benign(0.023) TCGA-AD-6899-01 2 180383274 180383274 T A ZNF385B Missense_Mutation p.Q163L 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-AD-6899-01 2 202900249 202900249 G A FZD7 Silent p.S293S 0.27 TCGA-AD-6899-01 2 20648536 20648536 G A RHOB 3'UTR 0.13 TCGA-AD-6899-01 2 220095081 220095081 C T ANKZF1 Silent p.H34H 0.45 TCGA-AD-6899-01 2 220309663 220309663 G A SPEG Missense_Mutation p.A199T 0.26 benign(0.146) TCGA-AD-6899-01 2 231074724 231074724 C G SP110 Splice_Site p.X251_splice 0.15 TCGA-AD-6899-01 2 241463491 241463491 C T ANKMY1 Missense_Mutation p.G459D 0.22 tolerated(0.59) benign(0.002) TCGA-AD-6899-01 2 26717864 26717864 G A OTOF Silent p.D281D 0.48 TCGA-AD-6899-01 2 27930980 27930980 G T AC074091.13 Missense_Mutation p.A18D 0.24 possibly_damaging(0.82) TCGA-AD-6899-01 2 38603385 38603387 CTC - ATL2 Intron 0.27 TCGA-AD-6899-01 2 43805671 43805671 G C THADA Missense_Mutation p.S266C 0.35 tolerated(0.18) possibly_damaging(0.447) TCGA-AD-6899-01 2 55826000 55826000 C T SMEK2 Missense_Mutation p.R158H 0.08 tolerated(0.24) benign(0.009) TCGA-AD-6899-01 2 71185487 71185487 G C ATP6V1B1 Missense_Mutation p.D100H 0.17 deleterious(0) probably_damaging(0.991) TCGA-AD-6899-01 3 125652461 125652461 G C ALG1L Silent p.L19L 0.06 TCGA-AD-6899-01 3 130447404 130447404 A T PIK3R4 Silent p.R570R 0.51 TCGA-AD-6899-01 3 140275465 140275465 G A CLSTN2 Silent p.T595T 0.62 TCGA-AD-6899-01 3 140785563 140785563 G A SPSB4 Missense_Mutation p.G206D 0.49 deleterious(0.02) probably_damaging(0.949) TCGA-AD-6899-01 3 151458448 151458448 A T AADACL2 Missense_Mutation p.E51D 0.15 tolerated(0.11) benign(0.263) TCGA-AD-6899-01 3 164906571 164906571 C T SLITRK3 Missense_Mutation p.R683Q 0.27 tolerated(0.11) benign(0.032) TCGA-AD-6899-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.41 deleterious(0.04) probably_damaging(0.96) TCGA-AD-6899-01 3 190127794 190127794 C G CLDN16 Missense_Mutation p.A296G 0.13 tolerated(0.07) benign(0.055) TCGA-AD-6899-01 3 195509433 195509433 G A MUC4 Silent p.A3006A 0.07 TCGA-AD-6899-01 3 197598290 197598290 G A LRCH3 Missense_Mutation p.R696Q 0.08 deleterious(0) probably_damaging(0.934) TCGA-AD-6899-01 3 39374902 39374902 G T CCR8 3'UTR 0.18 TCGA-AD-6899-01 3 43121987 43121987 C G POMGNT2 Missense_Mutation p.E313Q 0.09 tolerated(0.23) probably_damaging(0.999) TCGA-AD-6899-01 3 44438319 44438319 G A TCAIM Nonsense_Mutation p.W293* 0.19 TCGA-AD-6899-01 3 47910710 47910710 C T MAP4 Silent p.A989A 0.48 TCGA-AD-6899-01 3 77147280 77147280 G A ROBO2 Silent p.T75T 0.24 TCGA-AD-6899-01 4 102783754 102783754 A T BANK1 Silent p.S232S 0.42 TCGA-AD-6899-01 4 119204228 119204228 C T PRSS12 Missense_Mutation p.G693E 0.26 deleterious(0) probably_damaging(0.998) TCGA-AD-6899-01 4 167983650 167983650 G A SPOCK3 Silent p.F79F 0.16 TCGA-AD-6899-01 4 1956967 1956967 C T WHSC1 Silent p.I806I 0.07 TCGA-AD-6899-01 4 3227387 3227387 G A HTT Splice_Site p.X2589_splice 0.11 TCGA-AD-6899-01 5 102440311 102440311 A G GIN1 Silent p.N191N 0.40 TCGA-AD-6899-01 5 112174860 112174860 C - APC Frame_Shift_Del p.S1190Yfs*75 0.29 TCGA-AD-6899-01 5 11397305 11397305 C A CTNND2 Silent p.L150L 0.15 TCGA-AD-6899-01 5 11732305 11732305 G A CTNND2 Silent p.N39N 0.33 TCGA-AD-6899-01 5 140229803 140229803 G A PCDHA9 Missense_Mutation p.G575S 0.46 tolerated_low_confidence(0.3) benign(0.048) TCGA-AD-6899-01 5 140476334 140476334 C T PCDHB2 Missense_Mutation p.R654C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.846) TCGA-AD-6899-01 5 140573715 140573715 C T PCDHB10 Silent p.R530R 0.09 TCGA-AD-6899-01 5 140736920 140736920 G A PCDHGA4 Missense_Mutation p.R718H 0.26 tolerated_low_confidence(0.1) benign(0.03) TCGA-AD-6899-01 5 146763566 146763566 T G STK32A 3'UTR 0.32 TCGA-AD-6899-01 5 171615001 171615001 C T STK10 Missense_Mutation p.E16K 0.53 tolerated(0.21) benign(0.366) TCGA-AD-6899-01 5 176829643 176829643 C T F12 Missense_Mutation p.E530K 0.60 deleterious(0.03) benign(0.219) TCGA-AD-6899-01 5 176829692 176829692 C T F12 Silent p.E513E 0.56 TCGA-AD-6899-01 5 21854831 21854831 C T CDH12 Missense_Mutation p.V199I 0.38 tolerated(0.09) benign(0.214) TCGA-AD-6899-01 5 2749846 2749846 G A IRX2 Missense_Mutation p.P102L 0.35 deleterious(0) probably_damaging(0.998) TCGA-AD-6899-01 5 53751881 53751881 C T HSPB3 Nonsense_Mutation p.Q88* 0.09 TCGA-AD-6899-01 5 54327461 54327461 G T GZMK Missense_Mutation p.K211N 0.19 tolerated(0.76) benign(0.266) TCGA-AD-6899-01 5 95759067 95759067 C T PCSK1 Missense_Mutation p.V165I 0.11 tolerated(1) possibly_damaging(0.691) TCGA-AD-6899-01 6 111580789 111580789 G A KIAA1919 5'UTR 0.38 TCGA-AD-6899-01 6 112420550 112420550 G A FAM229B Missense_Mutation p.E22K 0.13 tolerated_low_confidence(0.12) benign(0.031) TCGA-AD-6899-01 6 116757216 116757216 G A DSE Missense_Mutation p.E529K 0.38 tolerated(0.92) benign(0) TCGA-AD-6899-01 6 133005561 133005561 C A VNN1 Missense_Mutation p.M424I 0.72 tolerated(0.31) benign(0.118) TCGA-AD-6899-01 6 136599662 136599662 G A BCLAF1 Silent p.S119S 0.07 TCGA-AD-6899-01 6 39196842 39196842 G A KCNK5 Silent p.L16L 0.51 TCGA-AD-6899-01 6 41162311 41162311 C T TREML2 Missense_Mutation p.A213T 0.14 tolerated(0.45) benign(0.002) TCGA-AD-6899-01 6 43038482 43038482 T C KLC4 Missense_Mutation p.L363P 0.10 deleterious(0) probably_damaging(0.997) TCGA-AD-6899-01 6 66204690 66204690 G T EYS Missense_Mutation p.P205Q 0.14 tolerated(0.34) probably_damaging(0.986) TCGA-AD-6899-01 7 100686389 100686389 C G MUC17 Missense_Mutation p.P3898A 0.55 benign(0) TCGA-AD-6899-01 7 108210134 108210134 G A THAP5 5'UTR 0.40 TCGA-AD-6899-01 7 117232393 117232393 C T CFTR Silent p.I724I 0.57 TCGA-AD-6899-01 7 139661721 139661721 C T TBXAS1 Missense_Mutation p.R322W 0.52 deleterious(0) probably_damaging(0.995) TCGA-AD-6899-01 7 143793070 143793070 C T OR2A12 Silent p.S290S 0.57 TCGA-AD-6899-01 7 150217395 150217395 C T GIMAP7 Silent p.T111T 0.40 TCGA-AD-6899-01 7 152027816 152027816 C A KMT2C Nonsense_Mutation p.E87* 0.52 TCGA-AD-6899-01 7 17338837 17338837 G T AHR 5'UTR 0.36 TCGA-AD-6899-01 7 38305053 38305053 C T TRGC1 Silent p.T76T 0.40 TCGA-AD-6899-01 7 6449843 6449843 G T DAGLB Missense_Mutation p.P580T 0.22 deleterious(0.03) possibly_damaging(0.838) TCGA-AD-6899-01 8 104948857 104948857 A G RIMS2 Silent p.P818P 0.23 TCGA-AD-6899-01 8 18725497 18725497 A T PSD3 Missense_Mutation p.Y441N 0.25 deleterious(0) probably_damaging(0.987) TCGA-AD-6899-01 8 27886850 27886850 C T NUGGC Missense_Mutation p.R696Q 0.45 tolerated(0.18) benign(0.023) TCGA-AD-6899-01 8 41559612 41559612 G A ANK1 Silent p.V815V 0.09 TCGA-AD-6899-01 8 41754048 41754048 C A ANK1 5'UTR 0.11 TCGA-AD-6899-01 8 52232545 52232545 G T PXDNL Missense_Mutation p.P1433Q 0.12 tolerated(0.08) possibly_damaging(0.565) TCGA-AD-6899-01 8 67726105 67726105 C T SGK3 Nonsense_Mutation p.R91* 0.57 TCGA-AD-6899-01 8 77775798 77775799 - G ZFHX4 Frame_Shift_Ins p.Y3286Ifs*70 0.29 TCGA-AD-6899-01 9 113194231 113194231 C T SVEP1 Missense_Mutation p.V1773I 0.29 benign(0.001) TCGA-AD-6899-01 9 117808873 117808873 G A TNC Silent p.F1647F 0.32 TCGA-AD-6899-01 9 127083782 127083782 C T NEK6 Silent p.I147I 0.11 TCGA-AD-6899-01 9 127253479 127253479 G A NR5A1 Missense_Mutation p.A340V 0.39 deleterious(0.03) benign(0.045) TCGA-AD-6899-01 9 135983730 135983730 C T RALGDS Missense_Mutation p.R281Q 0.36 tolerated(0.4) benign(0.001) TCGA-AD-6899-01 9 19446293 19446293 G A ACER2 Missense_Mutation p.R173H 0.38 deleterious(0) probably_damaging(0.992) TCGA-AD-6899-01 9 2056778 2056778 G A SMARCA2 Missense_Mutation p.R427H 0.18 possibly_damaging(0.522) TCGA-AD-6899-01 9 34125223 34125223 C T DCAF12 Missense_Mutation p.R44K 0.32 tolerated(0.13) benign(0.002) TCGA-AD-6899-01 9 35108137 35108137 G A FAM214B Silent p.P45P 0.50 TCGA-AD-6899-01 9 73458034 73458034 C T TRPM3 Missense_Mutation p.R229H 0.31 deleterious(0.02) possibly_damaging(0.839) TCGA-AD-6899-01 X 12734226 12734226 G T FRMPD4 Missense_Mutation p.D550Y 0.69 deleterious(0.04) benign(0.008) TCGA-AD-6899-01 X 1546978 1546978 G A ASMTL Silent p.G182G 0.14 TCGA-AD-6899-01 X 78217263 78217263 G T P2RY10 3'UTR 0.31 TCGA-AD-6899-01 X 95993591 95993591 C T DIAPH2 Nonsense_Mutation p.R58* 0.79 TCGA-AD-6901-01 10 122625220 122625220 T C WDR11 Missense_Mutation p.Y320H 0.30 tolerated(0.54) benign(0) TCGA-AD-6901-01 10 28908511 28908511 A C WAC Missense_Mutation p.K640N 0.32 deleterious(0.01) probably_damaging(0.976) TCGA-AD-6901-01 10 43595976 43595976 C T RET Missense_Mutation p.T48M 0.29 tolerated_low_confidence(0.13) benign(0.1) TCGA-AD-6901-01 10 49994911 49994911 C G WDFY4 Silent p.V1268V 0.33 TCGA-AD-6901-01 10 50121545 50121545 T C LRRC18 Missense_Mutation p.D219G 0.25 tolerated(0.06) benign(0.055) TCGA-AD-6901-01 10 71060583 71060583 G A HK1 Intron 0.27 TCGA-AD-6901-01 10 75071625 75071625 A G TTC18 Silent p.G447G 0.24 TCGA-AD-6901-01 10 7621866 7621866 G A ITIH5 Nonsense_Mutation p.R424* 0.22 TCGA-AD-6901-01 10 8106073 8106073 G A GATA3 Missense_Mutation p.R299Q 0.35 deleterious(0) possibly_damaging(0.749) TCGA-AD-6901-01 10 98129884 98129884 T C TLL2 Missense_Mutation p.M951V 0.38 tolerated(1) benign(0.003) TCGA-AD-6901-01 11 1009762 1009762 C T AP2A2 Missense_Mutation p.T896M 0.07 tolerated(0.18) probably_damaging(0.981) TCGA-AD-6901-01 11 106810251 106810251 G A GUCY1A2 Nonsense_Mutation p.R381* 0.24 TCGA-AD-6901-01 11 108811027 108811027 C T DDX10 Silent p.D835D 0.23 TCGA-AD-6901-01 11 117780623 117780623 T C TMPRSS13 Missense_Mutation p.K336R 0.10 deleterious(0.03) benign(0.028) TCGA-AD-6901-01 11 130284506 130284506 C T ADAMTS8 Missense_Mutation p.A496T 0.33 deleterious(0) possibly_damaging(0.598) TCGA-AD-6901-01 11 18387394 18387394 G A GTF2H1 Missense_Mutation p.R542Q 0.56 deleterious(0.01) benign(0.408) TCGA-AD-6901-01 11 1955642 1955642 C T TNNT3 Silent p.S149S 0.64 TCGA-AD-6901-01 11 281405 281405 C T NLRP6 Silent p.R557R 0.12 TCGA-AD-6901-01 11 33090345 33090345 G A TCP11L1 Missense_Mutation p.V423M 0.61 tolerated(0.26) possibly_damaging(0.849) TCGA-AD-6901-01 11 34111793 34111793 C G CAPRIN1 Missense_Mutation p.A454G 0.68 tolerated(0.57) benign(0.257) TCGA-AD-6901-01 11 55587445 55587445 T G OR5D18 Missense_Mutation p.F114V 0.10 deleterious(0.05) benign(0.027) TCGA-AD-6901-01 11 55927333 55927333 A T OR8K5 Missense_Mutation p.F154Y 0.64 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-AD-6901-01 11 56043537 56043537 T A OR5T1 Silent p.P141P 0.06 TCGA-AD-6901-01 11 56258044 56258044 T A OR5M8 Missense_Mutation p.E268V 0.91 deleterious(0) possibly_damaging(0.673) TCGA-AD-6901-01 11 56431997 56431997 C T OR5AR1 Missense_Mutation p.T279M 0.38 deleterious(0.01) benign(0.374) TCGA-AD-6901-01 11 57193047 57193047 C T SLC43A3 Missense_Mutation p.R94Q 0.21 deleterious(0.02) probably_damaging(0.965) TCGA-AD-6901-01 11 5776137 5776137 C - OR52N4 Frame_Shift_Del p.L57Cfs*86 0.38 TCGA-AD-6901-01 11 66332107 66332107 C T CTSF Missense_Mutation p.G415R 0.11 deleterious(0) probably_damaging(0.994) TCGA-AD-6901-01 11 66454631 66454631 G T SPTBN2 Missense_Mutation p.Q2244K 0.19 tolerated(0.62) probably_damaging(0.968) TCGA-AD-6901-01 11 9200515 9200515 C T DENND5A Missense_Mutation p.A521T 0.63 tolerated(0.06) probably_damaging(0.988) TCGA-AD-6901-01 11 93212419 93212419 G T SMCO4 5'UTR 0.24 TCGA-AD-6901-01 11 93912906 93912906 T A PANX1 Nonsense_Mutation p.C228* 0.40 TCGA-AD-6901-01 12 100042096 100042096 C T FAM71C Silent p.S48S 0.12 TCGA-AD-6901-01 12 100478308 100478308 C T UHRF1BP1L Missense_Mutation p.V412I 0.12 tolerated(0.44) benign(0.004) TCGA-AD-6901-01 12 10342505 10342505 G A TMEM52B Silent p.S86S 0.22 TCGA-AD-6901-01 12 112608194 112608194 T A HECTD4 Missense_Mutation p.R3853W 0.28 probably_damaging(0.997) TCGA-AD-6901-01 12 113612845 113612845 C T DDX54 Silent p.R290R 0.23 TCGA-AD-6901-01 12 14018844 14018844 G A GRIN2B Missense_Mutation p.A100V 0.43 tolerated(0.09) benign(0.376) TCGA-AD-6901-01 12 15718558 15718561 ACAA - PTPRO Frame_Shift_Del p.N916Rfs*29 0.13 TCGA-AD-6901-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.48 deleterious(0.02) possibly_damaging(0.773) TCGA-AD-6901-01 12 39064567 39064567 G T CPNE8 Silent p.S490S 0.64 TCGA-AD-6901-01 12 41961603 41961603 G C PDZRN4 Missense_Mutation p.E496Q 0.42 deleterious(0.02) possibly_damaging(0.448) TCGA-AD-6901-01 12 42854063 42854063 G A PRICKLE1 Missense_Mutation p.R682C 0.10 tolerated(0.06) benign(0.064) TCGA-AD-6901-01 12 42854336 42854336 T A PRICKLE1 Missense_Mutation p.S591C 0.20 deleterious(0) possibly_damaging(0.907) TCGA-AD-6901-01 12 42854337 42854337 C A PRICKLE1 Missense_Mutation p.R590S 0.20 tolerated(0.06) possibly_damaging(0.711) TCGA-AD-6901-01 12 42854338 42854338 C A PRICKLE1 Missense_Mutation p.R590M 0.19 deleterious(0) probably_damaging(0.944) TCGA-AD-6901-01 12 46316724 46316724 C A SCAF11 Missense_Mutation p.D1374Y 0.46 deleterious(0) probably_damaging(0.997) TCGA-AD-6901-01 12 4716533 4716533 C G DYRK4 Missense_Mutation p.S332C 0.19 deleterious(0) probably_damaging(0.98) TCGA-AD-6901-01 12 51323902 51323902 G A METTL7A Missense_Mutation p.R235H 0.28 deleterious(0.04) possibly_damaging(0.628) TCGA-AD-6901-01 12 57323179 57323179 C T SDR9C7 Missense_Mutation p.R240H 0.31 tolerated(0.19) benign(0.001) TCGA-AD-6901-01 12 77438460 77438460 C T E2F7 Silent p.L315L 0.08 TCGA-AD-6901-01 12 78225198 78225198 A G NAV3 5'UTR 0.47 TCGA-AD-6901-01 12 8800755 8800755 G A MFAP5 Missense_Mutation p.R152C 0.13 deleterious(0) probably_damaging(0.939) TCGA-AD-6901-01 13 101736068 101736068 G A NALCN Missense_Mutation p.R1193C 0.20 deleterious(0) probably_damaging(0.997) TCGA-AD-6901-01 13 113669099 113669099 C T MCF2L Silent p.I34I 0.24 TCGA-AD-6901-01 13 114523843 114523843 T C GAS6 Silent p.A677A 0.59 TCGA-AD-6901-01 13 19748022 19748022 T G TUBA3C Missense_Mutation p.E445A 0.08 tolerated_low_confidence(0.06) unknown(0) TCGA-AD-6901-01 13 25825817 25825817 T C MTMR6 Silent p.Q525Q 0.55 TCGA-AD-6901-01 13 37269561 37269561 G A SERTM1 3'UTR 0.20 TCGA-AD-6901-01 13 42888058 42888058 C G AKAP11 Missense_Mutation p.H1796D 0.22 tolerated(0.63) benign(0.002) TCGA-AD-6901-01 13 78474742 78474742 G C EDNRB Silent p.A423A 0.32 TCGA-AD-6901-01 14 105409039 105409039 G A AHNAK2 Missense_Mutation p.A4250V 0.10 possibly_damaging(0.526) TCGA-AD-6901-01 14 23530726 23530726 G A ACIN1 Missense_Mutation p.P1127S 0.33 probably_damaging(0.941) TCGA-AD-6901-01 14 23826497 23826497 C A EFS Missense_Mutation p.V542L 0.17 deleterious(0.04) possibly_damaging(0.895) TCGA-AD-6901-01 14 70712779 70712779 G A ADAM21P1 RNA 0.16 TCGA-AD-6901-01 14 89307801 89307801 T A TTC8 Missense_Mutation p.F174L 0.56 deleterious(0) possibly_damaging(0.682) TCGA-AD-6901-01 15 23194734 23194734 T C WHAMMP3 RNA 0.09 TCGA-AD-6901-01 15 23890184 23890184 C T MAGEL2 Silent p.T299T 0.30 TCGA-AD-6901-01 15 25616657 25616657 G A UBE3A Nonsense_Mutation p.Q225* 0.21 TCGA-AD-6901-01 15 29346719 29346719 G A APBA2 Missense_Mutation p.R211H 0.20 tolerated_low_confidence(0.26) benign(0.001) TCGA-AD-6901-01 15 41229721 41229721 G A DLL4 Silent p.T683T 0.26 TCGA-AD-6901-01 15 49426009 49426009 C G COPS2 Splice_Site p.X306_splice 0.43 TCGA-AD-6901-01 15 52350900 52350900 G A MAPK6 Silent p.Q257Q 0.22 TCGA-AD-6901-01 15 57730905 57730905 C T CGNL1 Silent p.N236N 0.29 TCGA-AD-6901-01 15 77092607 77092607 C A SCAPER Missense_Mutation p.R198L 0.28 deleterious(0.04) possibly_damaging(0.652) TCGA-AD-6901-01 16 1262089 1262089 G A CACNA1H Silent p.A1570A 0.59 TCGA-AD-6901-01 16 15853489 15853489 G A MYH11 Missense_Mutation p.R456W 0.33 probably_damaging(1) TCGA-AD-6901-01 16 1709929 1709929 G T CRAMP1L Missense_Mutation p.A760S 0.59 tolerated(0.4) benign(0.015) TCGA-AD-6901-01 16 22926517 22926517 C T HS3ST2 Silent p.N246N 0.48 TCGA-AD-6901-01 16 2499428 2499428 C A CCNF Missense_Mutation p.A455E 0.24 deleterious(0) possibly_damaging(0.892) TCGA-AD-6901-01 16 32266001 32266001 G T TP53TG3D Intron 0.29 TCGA-AD-6901-01 16 3486517 3486517 C T ZNF597 Silent p.A394A 0.23 TCGA-AD-6901-01 16 49407824 49407824 C T C16orf78 5'UTR 0.18 TCGA-AD-6901-01 16 50746089 50746089 G A NOD2 Missense_Mutation p.R756Q 0.20 tolerated(0.61) benign(0.01) TCGA-AD-6901-01 16 86612427 86612427 C T FOXL1 Missense_Mutation p.A33V 0.35 tolerated(0.44) benign(0.01) TCGA-AD-6901-01 17 14140071 14140071 C T CDRT15 Missense_Mutation p.R27Q 0.17 tolerated_low_confidence(0.09) benign(0.045) TCGA-AD-6901-01 17 1635692 1635692 C T WDR81 Missense_Mutation p.R1411C 0.57 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 17 21320361 21320361 T G KCNJ12 3'UTR 0.13 TCGA-AD-6901-01 17 29272008 29272008 G T ADAP2 Silent p.L198L 0.31 TCGA-AD-6901-01 17 293193 293193 G A FAM101B Missense_Mutation p.T66M 0.60 deleterious(0.01) probably_damaging(0.984) TCGA-AD-6901-01 17 35614772 35614772 G A ACACA Missense_Mutation p.S560L 0.44 deleterious(0) possibly_damaging(0.608) TCGA-AD-6901-01 17 39659909 39659909 G A KRT13 Silent p.D188D 0.47 TCGA-AD-6901-01 17 65027096 65027096 G T CACNG4 Silent p.L320L 0.13 TCGA-AD-6901-01 17 7077200 7077200 G A ASGR1 Intron 0.36 TCGA-AD-6901-01 17 7578253 7578253 C A TP53 Missense_Mutation p.G199V 0.51 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 17 80048932 80048932 C A FASN Missense_Mutation p.Q502H 0.71 tolerated(0.07) probably_damaging(0.926) TCGA-AD-6901-01 17 8736312 8736312 G A PIK3R6 Silent p.A232A 0.36 TCGA-AD-6901-01 18 10471697 10471697 G A APCDD1 Missense_Mutation p.R138Q 0.48 tolerated(0.06) probably_damaging(0.937) TCGA-AD-6901-01 18 2960785 2960785 G C LPIN2 Silent p.L18L 0.53 TCGA-AD-6901-01 18 50589734 50589734 G T DCC Nonsense_Mutation p.E349* 0.22 TCGA-AD-6901-01 18 56401597 56401597 G A MALT1 Missense_Mutation p.V487M 0.31 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 18 58038602 58038602 G C MC4R Missense_Mutation p.D327E 0.33 tolerated_low_confidence(1) benign(0.004) TCGA-AD-6901-01 18 64212059 64212059 C G CDH19 Missense_Mutation p.G286A 0.35 deleterious(0.01) probably_damaging(0.942) TCGA-AD-6901-01 18 674331 674331 T C ENOSF1 Missense_Mutation p.K443E 0.12 tolerated(0.42) benign(0.001) TCGA-AD-6901-01 18 76754109 76754109 G A SALL3 Silent p.P706P 0.27 TCGA-AD-6901-01 19 11107218 11107218 G A SMARCA4 Missense_Mutation p.E604K 0.15 probably_damaging(0.995) TCGA-AD-6901-01 19 11491584 11491584 A C EPOR Missense_Mutation p.V268G 0.22 tolerated(0.08) benign(0.393) TCGA-AD-6901-01 19 13394175 13394175 C T CACNA1A Missense_Mutation p.R1243H 0.35 probably_damaging(0.923) TCGA-AD-6901-01 19 15789114 15789114 C T CYP4F12 Missense_Mutation p.S81L 0.26 tolerated(0.34) benign(0.015) TCGA-AD-6901-01 19 16982172 16982172 T G SIN3B Missense_Mutation p.F884C 0.43 deleterious(0) probably_damaging(0.996) TCGA-AD-6901-01 19 18277972 18277972 G A PIK3R2 Missense_Mutation p.R531H 0.39 deleterious(0) possibly_damaging(0.903) TCGA-AD-6901-01 19 18375560 18375560 C T KIAA1683 Silent p.Q930Q 0.41 TCGA-AD-6901-01 19 18943118 18943118 G A UPF1 Missense_Mutation p.E34K 0.12 deleterious(0.01) benign(0.192) TCGA-AD-6901-01 19 22847069 22847069 G A ZNF492 Missense_Mutation p.E200K 0.15 tolerated(0.19) benign(0.016) TCGA-AD-6901-01 19 33623072 33623072 C T WDR88 5'UTR 0.58 TCGA-AD-6901-01 19 33693787 33693787 A G LRP3 Missense_Mutation p.E52G 0.15 deleterious(0.05) benign(0.192) TCGA-AD-6901-01 19 36884884 36884884 C A ZFP82 Missense_Mutation p.D120Y 0.38 tolerated(0.1) possibly_damaging(0.594) TCGA-AD-6901-01 19 38056164 38056164 C T ZNF571 Missense_Mutation p.R389K 0.45 tolerated(1) benign(0.002) TCGA-AD-6901-01 19 39109856 39109856 C T EIF3K 5'UTR 0.51 TCGA-AD-6901-01 19 40093172 40093172 G A LGALS13 5'UTR 0.46 TCGA-AD-6901-01 19 40392715 40392715 C T FCGBP Missense_Mutation p.D2597N 0.11 benign(0.013) TCGA-AD-6901-01 19 40957392 40957392 C A BLVRB Silent p.L114L 0.40 TCGA-AD-6901-01 19 41627443 41627443 G A CYP2F1 Missense_Mutation p.D189N 0.21 deleterious(0.04) benign(0.005) TCGA-AD-6901-01 19 41860534 41860534 C A B9D2 3'UTR 0.15 TCGA-AD-6901-01 19 41928947 41928947 C T BCKDHA Missense_Mutation p.S347L 0.20 deleterious(0.02) benign(0.428) TCGA-AD-6901-01 19 43979572 43979572 T C PHLDB3 Missense_Mutation p.H638R 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AD-6901-01 19 44807589 44807589 G C ZNF235 5'UTR 0.16 TCGA-AD-6901-01 19 46283072 46283072 C T DMPK Silent p.E82E 0.43 TCGA-AD-6901-01 19 50985691 50985691 C G EMC10 3'UTR 0.76 TCGA-AD-6901-01 19 52149781 52149781 C T SIGLEC14 Nonsense_Mutation p.W50* 0.11 TCGA-AD-6901-01 19 53959795 53959795 A G ZNF761 RNA 0.50 TCGA-AD-6901-01 19 54245786 54245786 G T MIR520H RNA 0.48 TCGA-AD-6901-01 19 55336502 55336502 G T KIR3DL1 Missense_Mutation p.W323C 0.58 tolerated(0.74) benign(0.015) TCGA-AD-6901-01 19 55677696 55677696 C A DNAAF3 Splice_Site p.X76_splice 0.19 TCGA-AD-6901-01 19 58384056 58384056 G T ZNF814 3'UTR 0.20 TCGA-AD-6901-01 19 694912 694912 G A PRSS57 Silent p.P46P 0.41 TCGA-AD-6901-01 19 8138035 8138035 G A FBN3 Missense_Mutation p.R2617W 0.17 tolerated(0.2) possibly_damaging(0.849) TCGA-AD-6901-01 1 110604073 110604073 G - ALX3 Frame_Shift_Del p.T236Mfs*95 0.17 TCGA-AD-6901-01 1 111894021 111894021 T A PIFO 3'UTR 0.12 TCGA-AD-6901-01 1 11561200 11561200 C A PTCHD2 Missense_Mutation p.L51M 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.724) TCGA-AD-6901-01 1 150531615 150531615 C T ADAMTSL4 Missense_Mutation p.R913C 0.45 tolerated(0.16) benign(0.001) TCGA-AD-6901-01 1 152190799 152190799 G A HRNR Silent p.H1102H 0.21 TCGA-AD-6901-01 1 152760144 152760144 A T LCE1E 3'UTR 0.20 TCGA-AD-6901-01 1 154698441 154698441 G A KCNN3 Missense_Mutation p.A551V 0.09 deleterious(0.02) benign(0.014) TCGA-AD-6901-01 1 161519647 161519647 C A FCGR3A 5'UTR 0.45 TCGA-AD-6901-01 1 166826813 166826813 C A TADA1 Missense_Mutation p.L333F 0.08 tolerated_low_confidence(0.08) benign(0.003) TCGA-AD-6901-01 1 167599604 167599604 G T RCSD1 5'UTR 0.54 TCGA-AD-6901-01 1 185269591 185269591 C T IVNS1ABP Missense_Mutation p.R407Q 0.21 tolerated(0.1) probably_damaging(0.999) TCGA-AD-6901-01 1 197141359 197141359 G A ZBTB41 Nonsense_Mutation p.Q669* 0.21 TCGA-AD-6901-01 1 203465175 203465175 G T OPTC Silent p.L14L 0.45 TCGA-AD-6901-01 1 232942258 232942258 C T MAP10 Missense_Mutation p.P497S 0.30 tolerated(0.34) benign(0.057) TCGA-AD-6901-01 1 237729972 237729972 C T RYR2 Missense_Mutation p.T1107M 0.28 benign(0.193) TCGA-AD-6901-01 1 240071286 240071286 A G CHRM3 Missense_Mutation p.K179E 0.25 deleterious(0) probably_damaging(0.952) TCGA-AD-6901-01 1 247150633 247150633 A C ZNF695 Missense_Mutation p.L395R 0.20 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 1 248512694 248512694 C T OR14C36 Silent p.G206G 0.25 TCGA-AD-6901-01 1 26751862 26751862 G C LIN28A Missense_Mutation p.K99N 0.28 tolerated(0.07) possibly_damaging(0.741) TCGA-AD-6901-01 1 27632864 27632864 G T WDTC1 Missense_Mutation p.R674L 0.32 deleterious(0) probably_damaging(0.998) TCGA-AD-6901-01 1 36785374 36785374 C T SH3D21 Silent p.N370N 0.26 TCGA-AD-6901-01 1 75172801 75172801 C T CRYZ Missense_Mutation p.G240R 0.20 tolerated(0.21) benign(0.269) TCGA-AD-6901-01 1 94027932 94027932 A T BCAR3 Missense_Mutation p.F782I 0.28 deleterious(0) probably_damaging(0.994) TCGA-AD-6901-01 1 97243196 97243196 T G PTBP2 Missense_Mutation p.L163R 0.22 tolerated(0.47) benign(0.015) TCGA-AD-6901-01 20 17462587 17462587 G T PCSK2 Missense_Mutation p.A597S 0.19 tolerated(0.66) benign(0.178) TCGA-AD-6901-01 20 2843737 2843737 T G VPS16 Missense_Mutation p.L453R 0.40 deleterious(0) probably_damaging(0.996) TCGA-AD-6901-01 20 31022350 31022350 G T ASXL1 Missense_Mutation p.R612M 0.20 deleterious(0) possibly_damaging(0.8) TCGA-AD-6901-01 20 37357011 37357011 G A SLC32A1 Missense_Mutation p.R436H 0.38 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 20 39751885 39751885 G A TOP1 Missense_Mutation p.R749Q 0.28 deleterious(0.02) probably_damaging(0.951) TCGA-AD-6901-01 20 44839071 44839071 G A CDH22 Silent p.D387D 0.38 TCGA-AD-6901-01 20 57766991 57766991 C T ZNF831 Missense_Mutation p.S306L 0.42 deleterious(0) possibly_damaging(0.512) TCGA-AD-6901-01 20 60711963 60711963 C A PSMA7 Nonsense_Mutation p.E233* 0.16 TCGA-AD-6901-01 20 60893663 60893665 CTC - LAMA5 In_Frame_Del p.E2362del 0.24 TCGA-AD-6901-01 20 62172218 62172218 C T SRMS Missense_Mutation p.A474T 0.14 tolerated(0.43) benign(0.011) TCGA-AD-6901-01 21 28306866 28306866 C T ADAMTS5 Silent p.A536A 0.20 TCGA-AD-6901-01 21 43413181 43413181 G A ZBTB21 Missense_Mutation p.R342W 0.30 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 21 47635650 47635650 C T LSS Missense_Mutation p.A281T 0.23 deleterious(0.02) possibly_damaging(0.538) TCGA-AD-6901-01 22 17071908 17071908 C A CCT8L2 Silent p.V511V 0.26 TCGA-AD-6901-01 22 25023452 25023452 C A GGT1 Silent p.I358I 0.09 TCGA-AD-6901-01 22 30125063 30125063 C T CABP7 Missense_Mutation p.T129M 0.13 deleterious(0) probably_damaging(0.953) TCGA-AD-6901-01 22 31529191 31529191 C A INPP5J Silent p.R399R 0.40 TCGA-AD-6901-01 22 32270390 32270390 A G DEPDC5 Missense_Mutation p.Q1223R 0.09 deleterious(0) probably_damaging(0.928) TCGA-AD-6901-01 22 32647765 32647765 C G SLC5A4 Missense_Mutation p.E102Q 0.21 deleterious(0.02) probably_damaging(1) TCGA-AD-6901-01 22 40552173 40552173 G A TNRC6B Missense_Mutation p.E34K 0.30 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-AD-6901-01 22 41188620 41188620 G A SLC25A17 Silent p.V81V 0.25 TCGA-AD-6901-01 22 50484378 50484378 G A TTLL8 Missense_Mutation p.R175W 0.20 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 22 51065277 51065277 C T ARSA Silent p.L223L 0.24 TCGA-AD-6901-01 2 112847206 112847206 C T TMEM87B Missense_Mutation p.R315C 0.21 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 2 136545955 136545955 C T LCT Missense_Mutation p.R1908H 0.24 tolerated_low_confidence(0.57) benign(0.001) TCGA-AD-6901-01 2 1437254 1437254 C A TPO Missense_Mutation p.S75Y 0.21 deleterious(0) possibly_damaging(0.781) TCGA-AD-6901-01 2 148657317 148657317 T - ACVR2A Frame_Shift_Del p.S127Qfs*23 0.32 TCGA-AD-6901-01 2 153437545 153437545 A G FMNL2 Silent p.A286A 0.15 TCGA-AD-6901-01 2 158406807 158406807 C G ACVR1C Missense_Mutation p.W214C 0.27 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 2 167133735 167133735 A G SCN9A Missense_Mutation p.F867L 0.17 deleterious(0) benign(0.057) TCGA-AD-6901-01 2 167298152 167298152 G A SCN7A Silent p.F637F 0.41 TCGA-AD-6901-01 2 16746936 16746936 C T FAM49A Missense_Mutation p.G57D 0.12 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 2 173341126 173341126 C T ITGA6 Missense_Mutation p.L425F 0.23 deleterious(0) probably_damaging(0.962) TCGA-AD-6901-01 2 179437307 179437307 C T TTN Missense_Mutation p.D24518N 0.15 TCGA-AD-6901-01 2 208993045 208993045 A G CRYGC Missense_Mutation p.L136P 0.18 tolerated(0.17) possibly_damaging(0.875) TCGA-AD-6901-01 2 210681781 210681781 G A UNC80 Missense_Mutation p.G495E 0.59 probably_damaging(0.994) TCGA-AD-6901-01 2 216245775 216245775 G T FN1 Missense_Mutation p.F1731L 0.16 deleterious(0.04) probably_damaging(0.992) TCGA-AD-6901-01 2 218683429 218683429 G A TNS1 Missense_Mutation p.T1105M 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-AD-6901-01 2 225750460 225750460 A T DOCK10 Missense_Mutation p.F225L 0.15 tolerated(0.41) probably_damaging(0.999) TCGA-AD-6901-01 2 226516164 226516164 C A NYAP2 Nonsense_Mutation p.C615* 0.20 TCGA-AD-6901-01 2 233272657 233272657 T G ALPPL2 Missense_Mutation p.V193G 0.21 deleterious(0) probably_damaging(0.979) TCGA-AD-6901-01 2 235943745 235943745 G A SH3BP4 Silent p.T33T 0.47 TCGA-AD-6901-01 2 242608058 242608058 G A ATG4B Silent p.P305P 0.18 TCGA-AD-6901-01 2 39185191 39185191 C G ARHGEF33 Missense_Mutation p.L463V 0.39 deleterious(0) probably_damaging(0.996) TCGA-AD-6901-01 2 50758479 50758479 G A NRXN1 Missense_Mutation p.R785W 0.46 deleterious(0) probably_damaging(1) TCGA-AD-6901-01 2 53956641 53956641 G A ASB3 Missense_Mutation p.S176F 0.17 tolerated(0.32) benign(0.248) TCGA-AD-6901-01 2 54853341 54853341 C G SPTBN1 Silent p.L538L 0.24 TCGA-AD-6901-01 2 69093335 69093335 T A BMP10 Missense_Mutation p.S235C 0.43 deleterious(0.04) possibly_damaging(0.586) TCGA-AD-6901-01 2 71622389 71622389 G A ZNF638 Intron 0.24 TCGA-AD-6901-01 2 71801397 71801397 G A DYSF Missense_Mutation p.E1100K 0.23 tolerated(1) benign(0.009) TCGA-AD-6901-01 2 9593140 9593140 C T CPSF3 Silent p.C498C 0.07 TCGA-AD-6901-01 3 100328620 100328620 T G GPR128 5'UTR 0.26 TCGA-AD-6901-01 3 121413304 121413304 T G GOLGB1 Missense_Mutation p.K2022N 0.15 probably_damaging(1) TCGA-AD-6901-01 3 129140467 129140467 G A EFCAB12 Missense_Mutation p.P77S 0.18 deleterious(0.04) benign(0.008) TCGA-AD-6901-01 3 12978126 12978126 C T IQSEC1 Silent p.A144A 0.41 TCGA-AD-6901-01 3 133648547 133648547 G A C3orf36 5'UTR 0.31 TCGA-AD-6901-01 3 134851758 134851758 G T EPHB1 Missense_Mutation p.E388D 0.23 tolerated(0.39) benign(0.031) TCGA-AD-6901-01 3 142396903 142396903 C T PLS1 Missense_Mutation p.T176I 0.24 deleterious(0) benign(0.171) TCGA-AD-6901-01 3 155232631 155232631 T C PLCH1 Missense_Mutation p.K493E 0.33 deleterious(0) possibly_damaging(0.571) TCGA-AD-6901-01 3 164906184 164906184 A T SLITRK3 Missense_Mutation p.L812Q 0.28 deleterious(0.01) possibly_damaging(0.556) TCGA-AD-6901-01 3 167016215 167016215 G T ZBBX Missense_Mutation p.P586H 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-AD-6901-01 3 181430986 181430986 G A SOX2 Missense_Mutation p.G280S 0.09 tolerated(0.13) benign(0.032) TCGA-AD-6901-01 3 184297566 184297566 C T EPHB3 Silent p.T672T 0.39 TCGA-AD-6901-01 3 192516241 192516241 G C MB21D2 Missense_Mutation p.I470M 0.24 deleterious(0) probably_damaging(0.998) TCGA-AD-6901-01 3 19575237 19575237 C T KCNH8 Silent p.S990S 0.47 TCGA-AD-6901-01 3 27243055 27243055 T A NEK10 Missense_Mutation p.Y746F 0.12 tolerated(0.08) possibly_damaging(0.808) TCGA-AD-6901-01 3 39307922 39307922 C T CX3CR1 Missense_Mutation p.V59M 0.26 deleterious(0.01) benign(0.102) TCGA-AD-6901-01 3 39374816 39374816 A G CCR8 Missense_Mutation p.R332G 0.46 tolerated(0.49) benign(0.001) TCGA-AD-6901-01 3 45988069 45988069 C T CXCR6 Silent p.V32V 0.45 TCGA-AD-6901-01 3 47040272 47040272 T C NBEAL2 Missense_Mutation p.L1096P 0.51 deleterious(0) benign(0.12) TCGA-AD-6901-01 3 48613110 48613110 C T COL7A1 Silent p.R1976R 0.19 TCGA-AD-6901-01 3 51679153 51679153 A C RAD54L2 Missense_Mutation p.Q855P 0.13 deleterious(0) probably_damaging(0.974) TCGA-AD-6901-01 3 52554110 52554110 C T STAB1 Missense_Mutation p.R1796W 0.25 deleterious(0) probably_damaging(0.932) TCGA-AD-6901-01 3 71804208 71804208 C T GPR27 Silent p.V336V 0.14 TCGA-AD-6901-01 3 75480034 75480034 G A RP11-803B1.8 5'Flank 0.45 TCGA-AD-6901-01 3 9476004 9476004 C G SETD5 Intron 0.32 TCGA-AD-6901-01 3 97517081 97517081 T A ARL6 3'UTR 0.25 TCGA-AD-6901-01 3 9860739 9860739 T A TTLL3 Intron 0.33 TCGA-AD-6901-01 4 123167330 123167330 A T KIAA1109 Missense_Mutation p.R1687S 0.08 benign(0.05) TCGA-AD-6901-01 4 134071179 134071179 C T PCDH10 5'UTR 0.43 TCGA-AD-6901-01 4 162306979 162306979 C G FSTL5 Missense_Mutation p.D822H 0.29 deleterious(0) probably_damaging(0.986) TCGA-AD-6901-01 4 17524636 17524636 G T CLRN2 Missense_Mutation p.G135W 0.48 tolerated(0.19) probably_damaging(0.967) TCGA-AD-6901-01 4 175750111 175750111 C T GLRA3 5'UTR 0.64 TCGA-AD-6901-01 4 41987164 41987164 T G DCAF4L1 3'UTR 0.15 TCGA-AD-6901-01 4 79258911 79258911 G A FRAS1 Missense_Mutation p.G788S 0.11 probably_damaging(1) TCGA-AD-6901-01 4 94750181 94750181 C A ATOH1 Missense_Mutation p.P35Q 0.10 tolerated_low_confidence(0.3) probably_damaging(0.997) TCGA-AD-6901-01 5 112175480 112175480 G T APC Nonsense_Mutation p.E1397* 0.57 TCGA-AD-6901-01 5 118513711 118513711 C T DMXL1 Missense_Mutation p.L2303F 0.38 deleterious(0) probably_damaging(0.999) TCGA-AD-6901-01 5 140250710 140250710 G A PCDHA11 Silent p.A674A 0.24 TCGA-AD-6901-01 5 140256773 140256773 C T PCDHA12 Silent p.S572S 0.26 TCGA-AD-6901-01 5 140432198 140432198 A T PCDHB1 Missense_Mutation p.K381N 0.23 deleterious(0.01) possibly_damaging(0.87) TCGA-AD-6901-01 5 140798586 140798586 G A PCDHGB7 Missense_Mutation p.S387N 0.24 tolerated(0.43) benign(0.033) TCGA-AD-6901-01 5 14608873 14608873 G T FAM105A Missense_Mutation p.G215V 0.33 tolerated(0.05) possibly_damaging(0.628) TCGA-AD-6901-01 5 148411146 148411146 C T SH3TC2 Missense_Mutation p.R369H 0.36 tolerated(0.85) benign(0.001) TCGA-AD-6901-01 5 180166927 180166927 G A OR2Y1 Silent p.I44I 0.12 TCGA-AD-6901-01 5 23527862 23527862 G A PRDM9 Missense_Mutation p.V889I 0.29 tolerated(0.22) benign(0.153) TCGA-AD-6901-01 5 71495084 71495084 G A MAP1B Missense_Mutation p.E1968K 0.10 possibly_damaging(0.649) TCGA-AD-6901-01 5 72469123 72469123 T A TMEM174 Missense_Mutation p.V18D 0.23 tolerated(0.06) possibly_damaging(0.885) TCGA-AD-6901-01 5 73163756 73163756 C T ARHGEF28 Silent p.S736S 0.28 TCGA-AD-6901-01 5 74655094 74655094 G T HMGCR Missense_Mutation p.A753S 0.30 deleterious(0.01) possibly_damaging(0.585) TCGA-AD-6901-01 6 110012626 110012626 A G FIG4 5'UTR 0.35 TCGA-AD-6901-01 6 112454030 112454030 G T LAMA4 Missense_Mutation p.F1253L 0.19 tolerated(0.11) benign(0.016) TCGA-AD-6901-01 6 117704573 117704573 G C ROS1 Silent p.L801L 0.20 TCGA-AD-6901-01 6 121642941 121642941 C T TBC1D32 Splice_Site p.X52_splice 0.38 TCGA-AD-6901-01 6 123786070 123786070 C T TRDN Silent p.P304P 0.17 TCGA-AD-6901-01 6 132068153 132068153 T A ENPP3 3'UTR 0.15 TCGA-AD-6901-01 6 134492229 134492229 C T SGK1 Missense_Mutation p.A419T 0.13 deleterious(0.01) possibly_damaging(0.715) TCGA-AD-6901-01 6 13639981 13639981 G A RANBP9 Missense_Mutation p.R447C 0.22 deleterious(0) probably_damaging(0.998) TCGA-AD-6901-01 6 139564297 139564297 G T TXLNB Missense_Mutation p.S474Y 0.22 deleterious(0) probably_damaging(0.931) TCGA-AD-6901-01 6 146755534 146755534 C T GRM1 Missense_Mutation p.R1063W 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.586) TCGA-AD-6901-01 6 159621607 159621607 G A FNDC1 Missense_Mutation p.V152I 0.10 tolerated(0.21) unknown(0) TCGA-AD-6901-01 6 161071518 161071518 G T LPA Missense_Mutation p.Q21K 0.21 tolerated(1) possibly_damaging(0.723) TCGA-AD-6901-01 6 161134081 161134081 C T PLG Silent p.N157N 0.20 TCGA-AD-6901-01 6 167709568 167709568 G A UNC93A Silent p.P106P 0.44 TCGA-AD-6901-01 6 169053874 169053875 AG - SMOC2 Frame_Shift_Del p.E429Gfs*17 0.16 TCGA-AD-6901-01 6 170121136 170121136 A G PHF10 Silent p.S53S 0.21 TCGA-AD-6901-01 6 24278429 24278429 C T DCDC2 Missense_Mutation p.R257H 0.19 deleterious(0.04) probably_damaging(0.964) TCGA-AD-6901-01 6 27276911 27276911 G A POM121L2 Silent p.G1013G 0.19 TCGA-AD-6901-01 6 29395299 29395299 G C OR11A1 Missense_Mutation p.I40M 0.42 deleterious(0) possibly_damaging(0.615) TCGA-AD-6901-01 6 29574954 29574954 G A GABBR1 Silent p.Y678Y 0.21 TCGA-AD-6901-01 6 35945098 35945098 G A SLC26A8 Silent p.S352S 0.40 TCGA-AD-6901-01 6 44120388 44120388 C T TMEM63B Missense_Mutation p.T632M 0.17 deleterious(0) probably_damaging(0.983) TCGA-AD-6901-01 6 70944266 70944266 G C COL9A1 Missense_Mutation p.Q764E 0.21 possibly_damaging(0.654) TCGA-AD-6901-01 6 78172235 78172235 C T HTR1B Missense_Mutation p.D296N 0.29 deleterious(0.04) possibly_damaging(0.46) TCGA-AD-6901-01 6 83667109 83667109 G A UBE3D Silent p.T357T 0.22 TCGA-AD-6901-01 7 100253177 100253177 G A ACTL6B Silent p.A45A 0.18 TCGA-AD-6901-01 7 103368566 103368566 G A RELN Nonsense_Mutation p.R249* 0.19 TCGA-AD-6901-01 7 106508490 106508490 G A PIK3CG Missense_Mutation p.V162I 0.48 tolerated(0.26) benign(0.362) TCGA-AD-6901-01 7 107621118 107621118 A G LAMB1 Missense_Mutation p.F272S 0.24 deleterious(0) probably_damaging(0.999) TCGA-AD-6901-01 7 11514192 11514192 C A THSD7A Missense_Mutation p.G674V 0.19 deleterious(0) possibly_damaging(0.833) TCGA-AD-6901-01 7 121671579 121671579 T C PTPRZ1 Missense_Mutation p.L1711S 0.39 deleterious(0) probably_damaging(0.986) TCGA-AD-6901-01 7 12409622 12409622 C T VWDE Silent p.T770T 0.15 TCGA-AD-6901-01 7 127234008 127234008 A G FSCN3 Missense_Mutation p.K34R 0.24 tolerated(0.2) benign(0.026) TCGA-AD-6901-01 7 141755416 141755416 C T MGAM Missense_Mutation p.R1125C 0.24 deleterious(0) possibly_damaging(0.889) TCGA-AD-6901-01 7 144463037 144463037 C G TPK1 Missense_Mutation p.L17F 0.47 tolerated(0.4) benign(0.199) TCGA-AD-6901-01 7 15666537 15666537 T A MEOX2 Missense_Mutation p.Q175L 0.20 deleterious(0) possibly_damaging(0.901) TCGA-AD-6901-01 7 41739819 41739819 G A INHBA Missense_Mutation p.P52S 0.38 tolerated(0.86) benign(0.008) TCGA-AD-6901-01 7 43495895 43495895 G C HECW1 Splice_Site p.X834_splice 0.32 TCGA-AD-6901-01 7 45125343 45125343 G A NACAD Missense_Mutation p.H146Y 0.36 tolerated(0.18) benign(0.001) TCGA-AD-6901-01 7 4856887 4856887 C T RADIL Missense_Mutation p.V571I 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-AD-6901-01 7 50070900 50070900 C T ZPBP Missense_Mutation p.R165H 0.17 deleterious(0.02) probably_damaging(0.952) TCGA-AD-6901-01 7 72419544 72419544 G A POM121 3'UTR 0.21 TCGA-AD-6901-01 7 79082451 79082451 C T MAGI2 Silent p.S62S 0.17 TCGA-AD-6901-01 7 81591263 81591263 G A CACNA2D1 Silent p.F971F 0.46 TCGA-AD-6901-01 7 81714153 81714153 C T CACNA2D1 Missense_Mutation p.R197H 0.25 tolerated(0.12) probably_damaging(0.931) TCGA-AD-6901-01 7 87778335 87778335 G C ADAM22 Missense_Mutation p.C510S 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-AD-6901-01 7 91794031 91794031 T G LRRD1 Missense_Mutation p.K162N 0.15 tolerated(0.1) possibly_damaging(0.527) TCGA-AD-6901-01 7 94228183 94228183 G A SGCE Missense_Mutation p.T386M 0.23 deleterious(0) probably_damaging(0.979) TCGA-AD-6901-01 7 98574637 98574637 C T TRRAP Missense_Mutation p.R2768W 0.27 possibly_damaging(0.556) TCGA-AD-6901-01 8 104427572 104427572 T C DCAF13 Silent p.T118T 0.25 TCGA-AD-6901-01 8 131136311 131136311 T C ASAP1 Missense_Mutation p.M519V 0.25 tolerated(0.14) possibly_damaging(0.604) TCGA-AD-6901-01 8 133198404 133198404 C A KCNQ3 Missense_Mutation p.L137F 0.22 deleterious(0) probably_damaging(0.968) TCGA-AD-6901-01 8 142446013 142446013 C T PTP4A3 3'Flank 0.47 TCGA-AD-6901-01 8 144644267 144644267 G A GSDMD Missense_Mutation p.R321Q 0.54 tolerated(0.55) benign(0.167) TCGA-AD-6901-01 8 15398025 15398025 T C TUSC3 Missense_Mutation p.L29P 0.12 deleterious(0.04) benign(0.044) TCGA-AD-6901-01 8 22472458 22472458 C T CCAR2 Silent p.T383T 0.40 TCGA-AD-6901-01 8 41542063 41542063 A G ANK1 Silent p.N1553N 0.42 TCGA-AD-6901-01 8 56699290 56699290 A G TGS1 Missense_Mutation p.E278G 0.42 tolerated(0.15) benign(0.037) TCGA-AD-6901-01 8 87543396 87543397 - G CPNE3 Frame_Shift_Ins p.K110Efs*24 0.15 TCGA-AD-6901-01 8 97307323 97307323 T G PTDSS1 Intron 0.26 TCGA-AD-6901-01 8 98289558 98289558 G A TSPYL5 Missense_Mutation p.A172V 0.24 tolerated(0.31) benign(0.089) TCGA-AD-6901-01 8 99961777 99961777 G A OSR2 Silent p.P199P 0.17 TCGA-AD-6901-01 9 108125133 108125133 G A SLC44A1 Missense_Mutation p.R311H 0.09 deleterious(0) probably_damaging(0.924) TCGA-AD-6901-01 9 139265834 139265834 C T CARD9 Silent p.P88P 0.23 TCGA-AD-6901-01 9 17273796 17273796 T C CNTLN Silent p.A305A 0.15 TCGA-AD-6901-01 9 21970975 21970975 C T CDKN2A Missense_Mutation p.R128Q 0.33 tolerated(0.36) benign(0.005) TCGA-AD-6901-01 9 3271080 3271080 C G RFX3 Silent p.L375L 0.07 TCGA-AD-6901-01 9 33053232 33053232 G A SMU1 Silent p.T393T 0.37 TCGA-AD-6901-01 9 33442770 33442770 C A AQP3 Intron 0.45 TCGA-AD-6901-01 9 35091693 35091693 G - PIGO Frame_Shift_Del p.R731Vfs*17 0.38 TCGA-AD-6901-01 9 4741076 4741076 G A AK3 Silent p.S4S 0.55 TCGA-AD-6901-01 9 79981755 79981755 C T VPS13A Missense_Mutation p.A2813V 0.23 tolerated(0.1) probably_damaging(0.999) TCGA-AD-6901-01 9 96714397 96714397 G T BARX1 3'UTR 0.12 TCGA-AD-6901-01 9 97355963 97355963 G A FBP2 Missense_Mutation p.R16C 0.07 deleterious(0) probably_damaging(0.999) TCGA-AD-6901-01 X 125298589 125298589 T C DCAF12L2 Missense_Mutation p.E440G 0.76 tolerated(0.26) possibly_damaging(0.78) TCGA-AD-6901-01 X 140995606 140995606 G T MAGEC1 Missense_Mutation p.A806S 0.50 tolerated_low_confidence(0.51) benign(0.364) TCGA-AD-6901-01 X 142717583 142717583 G A SLITRK4 Missense_Mutation p.L448F 0.36 deleterious(0) probably_damaging(0.998) TCGA-AD-6901-01 X 153172055 153172055 G A AVPR2 Missense_Mutation p.S330N 0.15 tolerated(0.19) benign(0.388) TCGA-AD-6901-01 X 306309 306309 C A PPP2R3B Silent p.L326L 0.10 TCGA-AD-6901-01 X 54949797 54949797 C G TRO Missense_Mutation p.L278V 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-AD-6901-01 X 64951013 64951013 G A MSN Missense_Mutation p.R171Q 0.65 deleterious(0) possibly_damaging(0.85) TCGA-AD-6901-01 X 69516975 69516975 G T KIF4A Silent p.L121L 0.28 TCGA-AD-6901-01 X 73961555 73961555 T C KIAA2022 Missense_Mutation p.N946S 0.37 tolerated(0.47) benign(0.005) TCGA-AD-6901-01 X 73964068 73964068 G A KIAA2022 Silent p.G108G 0.65 TCGA-AD-6901-01 X 74513340 74513340 G A UPRT Silent p.A140A 0.63 TCGA-AD-6963-01 10 33559763 33559763 G A NRP1 Silent p.F90F 0.09 TCGA-AD-6963-01 10 61874049 61874050 - T ANK3 Frame_Shift_Ins p.R961Kfs*27 0.08 TCGA-AD-6963-01 10 64000948 64000948 C T RTKN2 Missense_Mutation p.R108Q 0.14 deleterious(0.02) probably_damaging(1) TCGA-AD-6963-01 10 77542723 77542723 C T C10orf11 5'UTR 0.12 TCGA-AD-6963-01 10 81850656 81850656 C T TMEM254 Missense_Mutation p.R119C 0.11 deleterious(0.04) possibly_damaging(0.797) TCGA-AD-6963-01 11 100126628 100126628 G T CNTN5 Silent p.L714L 0.21 TCGA-AD-6963-01 11 101375164 101375164 G T TRPC6 Missense_Mutation p.A179E 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6963-01 11 108170605 108170605 G C ATM Missense_Mutation p.E1724Q 0.28 tolerated(0.22) benign(0.024) TCGA-AD-6963-01 11 121037343 121037343 T C TECTA Missense_Mutation p.S1814P 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-AD-6963-01 11 122669701 122669701 C T UBASH3B Missense_Mutation p.P470L 0.31 deleterious(0.02) probably_damaging(1) TCGA-AD-6963-01 11 49974244 49974244 C G OR4C13 Missense_Mutation p.I90M 0.10 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-AD-6963-01 11 5776744 5776744 C T OR52N4 Silent p.F258F 0.26 TCGA-AD-6963-01 11 64504337 64504337 C T RASGRP2 Missense_Mutation p.R328Q 0.26 tolerated(0.25) benign(0.017) TCGA-AD-6963-01 11 77036422 77036422 C T PAK1 Splice_Site p.X518_splice 0.21 TCGA-AD-6963-01 11 88027273 88027273 G T CTSC Silent p.T431T 0.12 TCGA-AD-6963-01 12 49522092 49522092 G C TUBA1B Missense_Mutation p.I335M 0.12 tolerated_low_confidence(0.06) probably_damaging(0.99) TCGA-AD-6963-01 12 57849517 57849517 T C INHBE Silent p.P66P 0.10 TCGA-AD-6963-01 12 6942971 6942971 A G LEPREL2 Missense_Mutation p.K443R 0.13 tolerated(0.45) benign(0.004) TCGA-AD-6963-01 13 23904795 23904795 C A SACS Missense_Mutation p.S4407I 0.14 benign(0.231) TCGA-AD-6963-01 13 25284697 25284697 C T ATP12A Missense_Mutation p.R961W 0.37 deleterious(0) probably_damaging(0.996) TCGA-AD-6963-01 13 37006822 37006822 T A CCNA1 Missense_Mutation p.Y22N 0.19 deleterious_low_confidence(0.01) benign(0) TCGA-AD-6963-01 13 48985955 48985955 G A LPAR6 Missense_Mutation p.T202I 0.09 tolerated(0.27) benign(0.042) TCGA-AD-6963-01 13 52857398 52857398 C T RP11-248G5.8 RNA 0.27 TCGA-AD-6963-01 13 67800080 67800080 G A PCDH9 Silent p.F831F 0.11 TCGA-AD-6963-01 14 101488466 101488466 C A MIR379 RNA 0.18 TCGA-AD-6963-01 14 21561036 21561036 T C ZNF219 Silent p.S140S 0.09 TCGA-AD-6963-01 14 50100259 50100259 G C DNAAF2 Missense_Mutation p.L537V 0.14 tolerated(0.17) benign(0.009) TCGA-AD-6963-01 14 79423683 79423683 G A NRXN3 Missense_Mutation p.V419M 0.16 deleterious(0) probably_damaging(0.996) TCGA-AD-6963-01 15 25959028 25959028 C T ATP10A Missense_Mutation p.V713M 0.17 deleterious(0) benign(0.049) TCGA-AD-6963-01 15 74625571 74625571 G A CCDC33 Intron 0.15 TCGA-AD-6963-01 16 1544420 1544420 G A TELO2 Silent p.A46A 0.12 TCGA-AD-6963-01 16 21110028 21110028 C T DNAH3 Missense_Mutation p.R810H 0.10 tolerated(0.49) benign(0.136) TCGA-AD-6963-01 16 30581357 30581357 G A ZNF688 Silent p.S237S 0.28 TCGA-AD-6963-01 16 3191388 3191388 C T ZNF213 3'UTR 0.31 TCGA-AD-6963-01 17 28443880 28443880 C T NSRP1 Nonsense_Mutation p.Q7* 0.24 TCGA-AD-6963-01 17 39253799 39253799 A T KRTAP4-8 Missense_Mutation p.C180S 0.13 tolerated(0.09) unknown(0) TCGA-AD-6963-01 17 39389106 39389106 A G KRTAP9-3 Missense_Mutation p.N118S 0.25 tolerated(0.78) possibly_damaging(0.884) TCGA-AD-6963-01 17 39637023 39637023 G A KRT35 Silent p.A109A 0.22 TCGA-AD-6963-01 17 43216428 43216428 C T ACBD4 Missense_Mutation p.T243M 0.09 deleterious_low_confidence(0.01) benign(0.433) TCGA-AD-6963-01 17 7577586 7577586 A C TP53 Missense_Mutation p.I232S 0.36 deleterious(0) probably_damaging(0.966) TCGA-AD-6963-01 18 43219774 43219774 G A SLC14A2 Missense_Mutation p.G303S 0.30 tolerated(0.11) benign(0.046) TCGA-AD-6963-01 19 19638843 19638843 C T NDUFA13 Missense_Mutation p.R115C 0.31 deleterious(0) probably_damaging(0.998) TCGA-AD-6963-01 19 34819007 34819007 A G KIAA0355 Missense_Mutation p.K352R 0.18 tolerated_low_confidence(0.3) benign(0.004) TCGA-AD-6963-01 19 35260435 35260435 A G ZNF599 Missense_Mutation p.V15A 0.11 tolerated(1) benign(0) TCGA-AD-6963-01 19 56273270 56273270 T C RFPL4A Missense_Mutation p.L35P 0.11 deleterious(0) possibly_damaging(0.594) TCGA-AD-6963-01 19 56565005 56565005 T C NLRP5 Silent p.L1044L 0.08 TCGA-AD-6963-01 19 58945182 58945182 G A ZNF132 Silent p.Y543Y 0.09 TCGA-AD-6963-01 1 103480099 103480099 C T COL11A1 Missense_Mutation p.A514T 0.31 probably_damaging(0.999) TCGA-AD-6963-01 1 1572344 1572344 C T CDK11B Missense_Mutation p.R575Q 0.19 unknown(0) TCGA-AD-6963-01 1 160771692 160771692 C T LY9 Intron 0.12 TCGA-AD-6963-01 1 162724541 162724541 C T DDR2 Missense_Mutation p.R105C 0.36 deleterious(0) probably_damaging(1) TCGA-AD-6963-01 1 182025501 182025501 G A ZNF648 Nonsense_Mutation p.R549* 0.18 TCGA-AD-6963-01 1 19071498 19071498 G A PAX7 3'UTR 0.40 TCGA-AD-6963-01 1 205238113 205238113 C T TMCC2 Silent p.P261P 0.25 TCGA-AD-6963-01 1 207741186 207741186 C A CR1 Missense_Mutation p.P1324T 0.08 deleterious(0.01) possibly_damaging(0.714) TCGA-AD-6963-01 1 22156152 22156152 G A HSPG2 Intron 0.14 TCGA-AD-6963-01 1 232551279 232551279 C G SIPA1L2 Missense_Mutation p.D1575H 0.29 deleterious(0) probably_damaging(0.988) TCGA-AD-6963-01 1 236381715 236381715 G T ERO1LB 3'UTR 0.20 TCGA-AD-6963-01 1 243319532 243319532 T A CEP170 Missense_Mutation p.E1301V 0.21 deleterious(0) benign(0.291) TCGA-AD-6963-01 1 248652015 248652015 G A OR2T5 Silent p.A42A 0.11 TCGA-AD-6963-01 1 50957470 50957470 C T FAF1 Missense_Mutation p.E500K 0.06 deleterious(0) possibly_damaging(0.873) TCGA-AD-6963-01 1 6165264 6165264 C T CHD5 3'UTR 0.64 TCGA-AD-6963-01 1 63018542 63018542 T A DOCK7 Missense_Mutation p.Y876F 0.10 tolerated(0.13) benign(0.067) TCGA-AD-6963-01 1 77333281 77333281 T C ST6GALNAC5 5'UTR 0.15 TCGA-AD-6963-01 1 79385973 79385973 G A ELTD1 Silent p.F452F 0.10 TCGA-AD-6963-01 20 2321081 2321081 G A TGM3 Missense_Mutation p.V646M 0.29 tolerated(0.13) possibly_damaging(0.781) TCGA-AD-6963-01 20 62370296 62370297 - CCCCG LIME1 3'UTR 0.41 TCGA-AD-6963-01 20 62851219 62851219 G A MYT1 Missense_Mutation p.A709T 0.43 benign(0.182) TCGA-AD-6963-01 22 24236660 24236660 T G AP000350.4 3'UTR 0.40 TCGA-AD-6963-01 22 42475294 42475294 C A FAM109B 3'UTR 0.07 TCGA-AD-6963-01 2 179427882 179427882 A T TTN Silent p.T27659T 0.12 TCGA-AD-6963-01 2 204048090 204048090 C G NBEAL1 Missense_Mutation p.I2199M 0.27 deleterious(0) probably_damaging(1) TCGA-AD-6963-01 2 238483682 238483682 C T RAB17 Missense_Mutation p.A207T 0.28 tolerated(0.33) benign(0.002) TCGA-AD-6963-01 2 240985294 240985294 T G OR6B3 Missense_Mutation p.M66L 0.09 tolerated(1) benign(0.002) TCGA-AD-6963-01 2 46707893 46707893 C T TMEM247 Missense_Mutation p.A156V 0.35 tolerated(0.23) benign(0.079) TCGA-AD-6963-01 3 137822705 137822705 G A DZIP1L Missense_Mutation p.R37C 0.12 deleterious(0) probably_damaging(1) TCGA-AD-6963-01 3 138724539 138724539 C T PRR23A Missense_Mutation p.R191Q 0.31 tolerated(0.29) benign(0.007) TCGA-AD-6963-01 3 38620865 38620865 T A SCN5A Missense_Mutation p.Q1117L 0.14 tolerated(0.2) benign(0.046) TCGA-AD-6963-01 3 52402873 52402873 C T DNAH1 Missense_Mutation p.T1961M 0.20 probably_damaging(1) TCGA-AD-6963-01 4 100463307 100463307 C T C4orf17 3'UTR 0.17 TCGA-AD-6963-01 4 153574013 153574013 G C TMEM154 Missense_Mutation p.T44S 0.18 tolerated(0.16) possibly_damaging(0.801) TCGA-AD-6963-01 4 173269752 173269752 A T GALNTL6 Silent p.S155S 0.13 TCGA-AD-6963-01 5 112174868 112174868 C T APC Nonsense_Mutation p.Q1193* 0.43 TCGA-AD-6963-01 5 179137002 179137002 T C CANX Silent p.A219A 0.38 TCGA-AD-6963-01 5 38919094 38919094 C T OSMR Silent p.C505C 0.17 TCGA-AD-6963-01 6 13273092 13273092 G A TBC1D7 Intron 0.13 TCGA-AD-6963-01 6 135265012 135265012 C T ALDH8A1 Silent p.A77A 0.24 TCGA-AD-6963-01 6 147067191 147067191 C T ADGB Missense_Mutation p.A1104V 0.17 tolerated(0.15) benign(0.027) TCGA-AD-6963-01 6 28121204 28121205 GT - ZKSCAN8 Frame_Shift_Del p.C383Wfs*52 0.21 TCGA-AD-6963-01 6 30917540 30917540 C G DPCR1 Missense_Mutation p.N433K 0.21 tolerated(1) unknown(0) TCGA-AD-6963-01 6 43422583 43422583 A G DLK2 5'UTR 0.29 TCGA-AD-6963-01 6 64709021 64709021 C T EYS Missense_Mutation p.D2261N 0.19 tolerated(0.06) benign(0.136) TCGA-AD-6963-01 6 96661950 96661950 G A FUT9 3'UTR 0.15 TCGA-AD-6963-01 7 128483368 128483368 G A FLNC Missense_Mutation p.R879H 0.17 tolerated(0.12) possibly_damaging(0.903) TCGA-AD-6963-01 7 131155693 131155693 A G MKLN1 Missense_Mutation p.E674G 0.10 deleterious(0) probably_damaging(0.984) TCGA-AD-6963-01 7 143658069 143658069 G T OR2F1 3'UTR 0.13 TCGA-AD-6963-01 7 21599285 21599285 C G DNAH11 Missense_Mutation p.Q253E 0.22 probably_damaging(0.916) TCGA-AD-6963-01 7 53103771 53103771 C T POM121L12 Missense_Mutation p.P136L 0.12 tolerated(0.07) probably_damaging(0.96) TCGA-AD-6963-01 7 6661685 6661685 C T ZNF853 Missense_Mutation p.R355W 0.19 deleterious_low_confidence(0) unknown(0) TCGA-AD-6963-01 7 72718855 72718855 C T NSUN5 Missense_Mutation p.S215N 0.12 deleterious(0) probably_damaging(0.986) TCGA-AD-6963-01 7 75890723 75890723 G A SRRM3 Missense_Mutation p.R210H 0.29 deleterious(0.02) unknown(0) TCGA-AD-6963-01 8 118812046 118812046 G T EXT1 Missense_Mutation p.P716T 0.12 deleterious(0) probably_damaging(1) TCGA-AD-6963-01 8 42218836 42218836 G C POLB Missense_Mutation p.D192H 0.09 deleterious(0) probably_damaging(1) TCGA-AD-6963-01 8 67813655 67813655 T A MCMDC2 Intron 0.19 TCGA-AD-6963-01 8 93088265 93088265 T C RUNX1T1 Intron 0.25 TCGA-AD-6963-01 9 136419672 136419672 G A ADAMTSL2 Missense_Mutation p.R378Q 0.42 tolerated(0.54) benign(0.002) TCGA-AD-6963-01 X 105451298 105451298 C T MUM1L1 Missense_Mutation p.P625S 0.20 deleterious(0) benign(0.108) TCGA-AD-6963-01 X 119513445 119513445 C T ATP1B4 Missense_Mutation p.R344C 0.15 deleterious(0) probably_damaging(0.969) TCGA-AD-6963-01 X 13787191 13787191 A T OFD1 Silent p.T1001T 0.24 TCGA-AD-6963-01 X 140985211 140985211 T A MAGEC3 Missense_Mutation p.I556N 0.10 deleterious(0) probably_damaging(0.999) TCGA-AD-6963-01 X 1505599 1505599 C T SLC25A6 Missense_Mutation p.E265K 0.08 deleterious(0.02) benign(0.4) TCGA-AD-6963-01 X 151909301 151909301 G A CSAG1 3'UTR 0.39 TCGA-AD-6963-01 X 153223681 153223681 C T HCFC1 Missense_Mutation p.R608H 0.67 tolerated(0.08) probably_damaging(0.992) TCGA-AD-6963-01 X 16142160 16142160 C G GRPR Silent p.L28L 0.27 TCGA-AD-6963-01 X 77914092 77914092 G A ZCCHC5 5'UTR 0.21 TCGA-AD-6964-01 10 103898993 103898993 G A PPRC1 Missense_Mutation p.R243H 0.21 deleterious(0) probably_damaging(0.994) TCGA-AD-6964-01 10 103921895 103921895 C T NOLC1 Nonsense_Mutation p.R657* 0.21 TCGA-AD-6964-01 10 104140293 104140293 A G GBF1 Missense_Mutation p.M1674V 0.11 deleterious(0.02) possibly_damaging(0.698) TCGA-AD-6964-01 10 104488265 104488265 C T SFXN2 Missense_Mutation p.A137V 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-AD-6964-01 10 105926421 105926421 T C WDR96 Missense_Mutation p.H955R 0.16 tolerated(0.15) benign(0.005) TCGA-AD-6964-01 10 105944867 105944867 C T WDR96 Missense_Mutation p.G683D 0.12 deleterious(0.01) possibly_damaging(0.568) TCGA-AD-6964-01 10 106937864 106937864 T C SORCS3 Missense_Mutation p.F648L 0.06 deleterious(0.01) possibly_damaging(0.754) TCGA-AD-6964-01 10 112352934 112352934 C T SMC3 Missense_Mutation p.S639L 0.11 deleterious(0) possibly_damaging(0.675) TCGA-AD-6964-01 10 114711332 114711332 T A TCF7L2 Missense_Mutation p.L116H 0.26 deleterious(0.04) possibly_damaging(0.873) TCGA-AD-6964-01 10 114903698 114903698 G A TCF7L2 Silent p.P234P 0.27 TCGA-AD-6964-01 10 115402763 115402763 C T NRAP Missense_Mutation p.G382D 0.28 deleterious(0.01) probably_damaging(1) TCGA-AD-6964-01 10 115489088 115489088 G A CASP7 Missense_Mutation p.S267N 0.32 tolerated(1) benign(0) TCGA-AD-6964-01 10 118646046 118646047 - T KIAA1598 Frame_Shift_Ins p.Y569Ifs*3 0.10 TCGA-AD-6964-01 10 120919265 120919265 G T SFXN4 Missense_Mutation p.A112E 0.38 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 10 121600381 121600381 G A MCMBP Nonsense_Mutation p.R408* 0.22 TCGA-AD-6964-01 10 124350186 124350186 C A DMBT1 Missense_Mutation p.Q705K 0.05 tolerated(0.82) unknown(0) TCGA-AD-6964-01 10 124399805 124399805 G A DMBT1 Missense_Mutation p.V2269M 0.18 tolerated(0.06) probably_damaging(0.997) TCGA-AD-6964-01 10 124596429 124596429 G A CUZD1 Silent p.V245V 0.30 TCGA-AD-6964-01 10 126086651 126086651 A G OAT Missense_Mutation p.C394R 0.22 tolerated(0.06) benign(0.021) TCGA-AD-6964-01 10 126631606 126631606 G A ZRANB1 Missense_Mutation p.A182T 0.07 tolerated(0.6) benign(0.002) TCGA-AD-6964-01 10 126686569 126686569 G A CTBP2 Missense_Mutation p.R717C 0.23 deleterious(0.03) probably_damaging(0.992) TCGA-AD-6964-01 10 131641447 131641447 G A EBF3 Missense_Mutation p.A374V 0.14 deleterious(0) benign(0.003) TCGA-AD-6964-01 10 134726192 134726192 T C TTC40 Silent p.A822A 0.12 TCGA-AD-6964-01 10 17432578 17432578 C T ST8SIA6 Missense_Mutation p.C81Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 10 21139325 21139325 T C NEBL Missense_Mutation p.E372G 0.10 tolerated(0.26) benign(0.008) TCGA-AD-6964-01 10 22048447 22048447 G A DNAJC1 Silent p.D416D 0.21 TCGA-AD-6964-01 10 23729932 23729932 C T OTUD1 3'UTR 0.22 TCGA-AD-6964-01 10 24832556 24832556 A G KIAA1217 Missense_Mutation p.I1453V 0.17 deleterious(0) probably_damaging(0.976) TCGA-AD-6964-01 10 24909084 24909084 C T ARHGAP21 Silent p.V580V 0.26 TCGA-AD-6964-01 10 25885604 25885604 T A GPR158 Missense_Mutation p.D677E 0.14 tolerated(0.57) benign(0.034) TCGA-AD-6964-01 10 26802502 26802502 A G APBB1IP Silent p.E242E 0.13 TCGA-AD-6964-01 10 27444511 27444511 G A MASTL Silent p.G52G 0.14 TCGA-AD-6964-01 10 27702383 27702383 T C PTCHD3 Missense_Mutation p.N266S 0.19 deleterious(0.02) possibly_damaging(0.669) TCGA-AD-6964-01 10 29751240 29751240 T G SVIL Missense_Mutation p.E2123A 0.23 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 10 33208993 33208993 A G ITGB1 Missense_Mutation p.I430T 0.15 deleterious(0.02) benign(0.426) TCGA-AD-6964-01 10 35894520 35894520 T C GJD4 Missense_Mutation p.F9L 0.11 tolerated(0.08) probably_damaging(0.972) TCGA-AD-6964-01 10 38344019 38344019 G A ZNF33A Missense_Mutation p.D323N 0.10 tolerated(0.33) benign(0.004) TCGA-AD-6964-01 10 436025 436025 C T DIP2C Silent p.T501T 0.21 TCGA-AD-6964-01 10 43651126 43651126 C T CSGALNACT2 Nonsense_Mutation p.R177* 0.29 TCGA-AD-6964-01 10 48373288 48373288 C A ZNF488 3'UTR 0.14 TCGA-AD-6964-01 10 48414167 48414167 C A GDF2 Missense_Mutation p.R234M 0.22 tolerated(0.09) benign(0.07) TCGA-AD-6964-01 10 49450321 49450321 C T FRMPD2 Silent p.T150T 0.29 TCGA-AD-6964-01 10 5008185 5008185 A G AKR1C1 Missense_Mutation p.Y55C 0.07 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 10 50227658 50227658 G A VSTM4 3'UTR 0.38 TCGA-AD-6964-01 10 50667140 50667140 C T ERCC6 Silent p.L1401L 0.19 TCGA-AD-6964-01 10 50690778 50690778 G A ERCC6 Silent p.S708S 0.37 TCGA-AD-6964-01 10 50723735 50723735 A G ERCC6-PGBD3 Missense_Mutation p.S944P 0.20 tolerated_low_confidence(0.32) unknown(0) TCGA-AD-6964-01 10 50732816 50732816 C T ERCC6-PGBD3 Silent p.G220G 0.17 TCGA-AD-6964-01 10 50819624 50819624 A G SLC18A3 Missense_Mutation p.T280A 0.16 deleterious(0.03) probably_damaging(0.983) TCGA-AD-6964-01 10 51562481 51562481 G A MSMB 3'UTR 0.16 TCGA-AD-6964-01 10 54048697 54048697 T A PRKG1 Missense_Mutation p.N613K 0.18 deleterious(0) possibly_damaging(0.599) TCGA-AD-6964-01 10 55626564 55626564 T C PCDH15 Missense_Mutation p.I1185M 0.08 deleterious(0) probably_damaging(0.992) TCGA-AD-6964-01 10 5838766 5838766 G A GDI2 Silent p.D71D 0.27 TCGA-AD-6964-01 10 5842607 5842607 T C GDI2 Missense_Mutation p.N36S 0.10 deleterious(0.01) possibly_damaging(0.629) TCGA-AD-6964-01 10 60560059 60560059 A G BICC1 Missense_Mutation p.T611A 0.11 tolerated(0.76) benign(0) TCGA-AD-6964-01 10 61718317 61718317 A G C10orf40 Missense_Mutation p.V38A 0.10 tolerated_low_confidence(0.31) benign(0.007) TCGA-AD-6964-01 10 61958200 61958200 T C ANK3 Silent p.T529T 0.19 TCGA-AD-6964-01 10 64414622 64414622 A G ZNF365 Intron 0.31 TCGA-AD-6964-01 10 64573543 64573543 G - EGR2 Frame_Shift_Del p.S286Vfs*36 0.08 TCGA-AD-6964-01 10 64979730 64979730 C T JMJD1C Missense_Mutation p.S154N 0.09 tolerated(0.08) benign(0.006) TCGA-AD-6964-01 10 69571204 69571205 - T DNAJC12 Intron 0.20 TCGA-AD-6964-01 10 70765591 70765591 C T KIAA1279 Missense_Mutation p.R237C 0.28 deleterious(0) probably_damaging(0.955) TCGA-AD-6964-01 10 71853533 71853533 A T H2AFY2 Missense_Mutation p.T174S 0.26 tolerated(0.23) benign(0.007) TCGA-AD-6964-01 10 72360349 72360349 G A PRF1 Missense_Mutation p.R104C 0.09 deleterious(0) possibly_damaging(0.817) TCGA-AD-6964-01 10 73330577 73330577 C A CDH23 Missense_Mutation p.L219M 0.28 deleterious(0.02) possibly_damaging(0.586) TCGA-AD-6964-01 10 73768167 73768167 G A CHST3 Missense_Mutation p.A460T 0.28 tolerated(0.2) benign(0.009) TCGA-AD-6964-01 10 74934479 74934479 C - FAM149B1 Frame_Shift_Del p.P29Lfs*92 0.10 TCGA-AD-6964-01 10 75394397 75394397 C T MYOZ1 Missense_Mutation p.S116N 0.28 tolerated(0.51) benign(0.005) TCGA-AD-6964-01 10 75530199 75530201 CTC - SEC24C In_Frame_Del p.S1010del 0.12 TCGA-AD-6964-01 10 7618562 7618562 C T ITIH5 Missense_Mutation p.S611N 0.28 tolerated(0.57) benign(0.002) TCGA-AD-6964-01 10 78651443 78651443 C T KCNMA1 Missense_Mutation p.R1044Q 0.44 tolerated(0.67) probably_damaging(0.989) TCGA-AD-6964-01 10 81146004 81146004 C T ZCCHC24 3'UTR 0.14 TCGA-AD-6964-01 10 88683438 88683438 C T BMPR1A Missense_Mutation p.L521F 0.09 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 10 89474749 89474749 T C PAPSS2 Missense_Mutation p.V216A 0.07 deleterious(0.02) benign(0.36) TCGA-AD-6964-01 10 89622821 89622821 C T KLLN 5'UTR 0.33 TCGA-AD-6964-01 10 90577640 90577640 A - LIPM Frame_Shift_Del p.K331Nfs*8 0.19 TCGA-AD-6964-01 10 91498838 91498838 G A KIF20B Silent p.K1260K 0.09 TCGA-AD-6964-01 10 93016 93016 G A TUBB8 Missense_Mutation p.A439V 0.32 tolerated_low_confidence(0.36) unknown(0) TCGA-AD-6964-01 10 93113 93113 C T TUBB8 Missense_Mutation p.E407K 0.14 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-AD-6964-01 10 94449988 94449988 A G HHEX Missense_Mutation p.H82R 0.25 tolerated(0.28) benign(0.133) TCGA-AD-6964-01 10 94821946 94821946 C T CYP26C1 Silent p.H128H 0.25 TCGA-AD-6964-01 10 95931110 95931110 C A PLCE1 Missense_Mutation p.L556I 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6964-01 10 96018889 96018889 G T PLCE1 Missense_Mutation p.D1266Y 0.24 deleterious(0.01) possibly_damaging(0.619) TCGA-AD-6964-01 10 96114746 96114746 C T NOC3L Missense_Mutation p.A224T 0.13 tolerated(0.15) benign(0.007) TCGA-AD-6964-01 10 97423973 97423973 G A TCTN3 Nonsense_Mutation p.Q559* 0.25 TCGA-AD-6964-01 10 97916980 97916981 - A ZNF518A RNA 0.21 TCGA-AD-6964-01 10 97919137 97919139 AAT - ZNF518A RNA 0.28 TCGA-AD-6964-01 10 98355274 98355274 T C PIK3AP1 3'UTR 0.35 TCGA-AD-6964-01 10 98985864 98985864 A G ARHGAP19 3'UTR 0.08 TCGA-AD-6964-01 10 99156034 99156034 T C RRP12 Missense_Mutation p.T132A 0.22 deleterious(0) possibly_damaging(0.638) TCGA-AD-6964-01 10 99205605 99205605 C A EXOSC1 Splice_Site p.X11_splice 0.21 TCGA-AD-6964-01 10 99439536 99439536 A G AVPI1 Missense_Mutation p.F43L 0.10 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 10 99991401 99991401 G A R3HCC1L Missense_Mutation p.E640K 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-AD-6964-01 11 100141857 100141857 C T CNTN5 Missense_Mutation p.A733V 0.16 deleterious(0) probably_damaging(0.982) TCGA-AD-6964-01 11 100812615 100812615 G A ARHGAP42 Missense_Mutation p.M311I 0.09 tolerated(0.59) benign(0.003) TCGA-AD-6964-01 11 1009393 1009393 C - AP2A2 Frame_Shift_Del p.K869Rfs*99 0.16 TCGA-AD-6964-01 11 102713479 102713479 A G MMP3 Missense_Mutation p.C92R 0.20 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 11 103024239 103024239 T C DYNC2H1 Splice_Site p.X1101_splice 0.06 TCGA-AD-6964-01 11 103349846 103349846 G A DYNC2H1 Silent p.P4270P 0.26 TCGA-AD-6964-01 11 103780311 103780311 T C PDGFD 3'UTR 0.27 TCGA-AD-6964-01 11 108357050 108357050 A G KDELC2 Missense_Mutation p.I173T 0.24 deleterious(0) probably_damaging(0.975) TCGA-AD-6964-01 11 1090915 1090915 C A MUC2 Silent p.T1270T 0.22 TCGA-AD-6964-01 11 109295378 109295378 C T C11orf87 3'UTR 0.27 TCGA-AD-6964-01 11 109296352 109296353 - A C11orf87 3'UTR 0.20 TCGA-AD-6964-01 11 110007609 110007609 T C ZC3H12C Silent p.S81S 0.24 TCGA-AD-6964-01 11 110128833 110128833 T A RDX Missense_Mutation p.L183F 0.18 deleterious(0.02) benign(0.091) TCGA-AD-6964-01 11 110143339 110143339 G A RDX Silent p.N6N 0.16 TCGA-AD-6964-01 11 111594233 111594233 C T SIK2 Nonsense_Mutation p.R721* 0.16 TCGA-AD-6964-01 11 111808235 111808235 C T DIXDC1 Silent p.C4C 0.12 TCGA-AD-6964-01 11 113209530 113209530 A G TTC12 Missense_Mutation p.N204S 0.22 tolerated(0.09) benign(0.023) TCGA-AD-6964-01 11 114112919 114112920 - T ZBTB16 Frame_Shift_Ins p.G496Wfs*27 0.19 TCGA-AD-6964-01 11 116660733 116660733 A G APOA5 3'UTR 0.24 TCGA-AD-6964-01 11 117079769 117079769 A G PCSK7 Missense_Mutation p.V512A 0.10 tolerated(0.06) possibly_damaging(0.574) TCGA-AD-6964-01 11 117258023 117258023 T C CEP164 Missense_Mutation p.L610P 0.11 deleterious(0.02) possibly_damaging(0.589) TCGA-AD-6964-01 11 118343236 118343236 G A KMT2A Silent p.P454P 0.13 TCGA-AD-6964-01 11 118769959 118769959 G A BCL9L Missense_Mutation p.S1222F 0.16 possibly_damaging(0.862) TCGA-AD-6964-01 11 118773004 118773004 G - BCL9L Frame_Shift_Del p.P483Rfs*19 0.26 TCGA-AD-6964-01 11 120352237 120352237 G T ARHGEF12 Missense_Mutation p.Q1502H 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.548) TCGA-AD-6964-01 11 12263786 12263786 A G MICAL2 Missense_Mutation p.H788R 0.15 tolerated_low_confidence(0.49) benign(0.002) TCGA-AD-6964-01 11 12278493 12278493 C T MICAL2 Silent p.A1039A 0.15 TCGA-AD-6964-01 11 12281413 12281413 C T MICAL2 Silent p.A1101A 0.16 TCGA-AD-6964-01 11 122929085 122929085 A G HSPA8 Missense_Mutation p.S544P 0.20 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-AD-6964-01 11 1244303 1244303 C T MUC5B 5'UTR 0.55 TCGA-AD-6964-01 11 124757670 124757670 T C ROBO4 Missense_Mutation p.E672G 0.27 deleterious(0.02) benign(0.146) TCGA-AD-6964-01 11 1252675 1252675 C A MUC5B Silent p.P521P 0.20 TCGA-AD-6964-01 11 125280738 125280738 T C PKNOX2 Missense_Mutation p.I261T 0.22 tolerated(0.27) benign(0.004) TCGA-AD-6964-01 11 125775113 125775113 A G DDX25 Missense_Mutation p.N24D 0.15 tolerated_low_confidence(0.11) benign(0.142) TCGA-AD-6964-01 11 126283429 126283429 G A ST3GAL4 Silent p.T267T 0.15 TCGA-AD-6964-01 11 1271320 1271320 G A MUC5B Missense_Mutation p.A4404T 0.26 benign(0.008) TCGA-AD-6964-01 11 128332206 128332206 G A ETS1 3'UTR 0.24 TCGA-AD-6964-01 11 128332298 128332298 C A ETS1 Missense_Mutation p.E472D 0.07 deleterious(0) possibly_damaging(0.806) TCGA-AD-6964-01 11 128680400 128680400 C T FLI1 Silent p.S292S 0.13 TCGA-AD-6964-01 11 128781301 128781301 G A KCNJ5 Missense_Mutation p.E45K 0.32 tolerated(0.49) benign(0.029) TCGA-AD-6964-01 11 130078533 130078533 C T ST14 Silent p.A741A 0.12 TCGA-AD-6964-01 11 1316984 1316984 G A TOLLIP Missense_Mutation p.T25M 0.26 deleterious(0.03) benign(0.017) TCGA-AD-6964-01 11 134240241 134240241 T C GLB1L2 Missense_Mutation p.L388S 0.16 deleterious(0.01) benign(0.01) TCGA-AD-6964-01 11 13749138 13749138 A G FAR1 Silent p.A431A 0.36 TCGA-AD-6964-01 11 14880794 14880794 T C PDE3B Splice_Site p.X908_splice 0.13 TCGA-AD-6964-01 11 16007903 16007903 A G SOX6 Missense_Mutation p.L657P 0.13 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 11 17483271 17483271 T A ABCC8 Missense_Mutation p.K227N 0.09 deleterious(0) possibly_damaging(0.67) TCGA-AD-6964-01 11 17793947 17793947 G A KCNC1 Missense_Mutation p.V436M 0.30 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 11 18231975 18231976 - C RP11-113D6.10 3'UTR 0.17 TCGA-AD-6964-01 11 1857405 1857405 T C SYT8 Missense_Mutation p.V150A 0.13 tolerated(0.69) benign(0.002) TCGA-AD-6964-01 11 18600354 18600354 T C UEVLD Missense_Mutation p.Y15C 0.30 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 11 1907994 1907994 G T LSP1 Missense_Mutation p.Q378H 0.28 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AD-6964-01 11 20648387 20648387 C T SLC6A5 Missense_Mutation p.T465M 0.15 tolerated(0.29) benign(0.028) TCGA-AD-6964-01 11 2185574 2185574 C T TH Silent p.P492P 0.16 TCGA-AD-6964-01 11 2191024 2191024 C T TH Silent p.A87A 0.25 TCGA-AD-6964-01 11 26692576 26692576 G A SLC5A12 3'UTR 0.19 TCGA-AD-6964-01 11 3128630 3128631 TC - OSBPL5 Frame_Shift_Del p.N308Pfs*2 0.18 TCGA-AD-6964-01 11 32615495 32615495 G T EIF3M Missense_Mutation p.R206M 0.10 deleterious(0) possibly_damaging(0.896) TCGA-AD-6964-01 11 33689783 33689783 A T KIAA1549L 3'UTR 0.30 TCGA-AD-6964-01 11 34161970 34161970 G A NAT10 Missense_Mutation p.A815T 0.08 tolerated(0.73) benign(0.009) TCGA-AD-6964-01 11 34502351 34502351 T A ELF5 Missense_Mutation p.R223S 0.24 tolerated(1) probably_damaging(0.989) TCGA-AD-6964-01 11 3661226 3661226 G A ART5 Nonsense_Mutation p.R145* 0.28 TCGA-AD-6964-01 11 3707305 3707305 G A NUP98 Missense_Mutation p.A1525V 0.22 tolerated(0.11) benign(0.003) TCGA-AD-6964-01 11 379997 379997 C A B4GALNT4 Missense_Mutation p.L874M 0.19 deleterious(0) unknown(0) TCGA-AD-6964-01 11 45928471 45928471 C T C11orf94 Missense_Mutation p.A42T 0.26 deleterious(0.01) benign(0.035) TCGA-AD-6964-01 11 4608755 4608755 G A OR52I2 Missense_Mutation p.G238D 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6964-01 11 46393630 46393630 C T DGKZ Silent p.G467G 0.18 TCGA-AD-6964-01 11 46750235 46750235 G T F2 Missense_Mutation p.K440N 0.12 deleterious(0) possibly_damaging(0.886) TCGA-AD-6964-01 11 49179513 49179513 C T FOLH1 Missense_Mutation p.G508D 0.22 tolerated(1) benign(0.001) TCGA-AD-6964-01 11 498026 498026 C T RNH1 Missense_Mutation p.V358M 0.29 tolerated(0.06) benign(0.254) TCGA-AD-6964-01 11 49805507 49805507 C T RP11-707M1.1 RNA 0.09 TCGA-AD-6964-01 11 5474762 5474762 C T OR51I2 Missense_Mutation p.T15I 0.11 tolerated(0.11) probably_damaging(0.998) TCGA-AD-6964-01 11 5566287 5566287 A G OR52H1 Missense_Mutation p.I156T 0.17 tolerated(0.12) benign(0.1) TCGA-AD-6964-01 11 55798421 55798422 - T OR5AS1 Frame_Shift_Ins p.C179Lfs*2 0.16 TCGA-AD-6964-01 11 55872954 55872954 A G OR8H2 Missense_Mutation p.T146A 0.22 tolerated(0.89) benign(0.012) TCGA-AD-6964-01 11 56344968 56344968 A G OR5M10 Missense_Mutation p.V77A 0.23 tolerated(0.16) benign(0.081) TCGA-AD-6964-01 11 56380043 56380043 T A OR5M1 Missense_Mutation p.K312N 0.19 deleterious(0.03) benign(0.357) TCGA-AD-6964-01 11 5653546 5653546 C T TRIM6-TRIM34 Silent p.S349S 0.24 TCGA-AD-6964-01 11 57101945 57101945 G A SSRP1 Nonsense_Mutation p.R78* 0.10 TCGA-AD-6964-01 11 58377433 58377433 C T ZFP91 Silent p.N167N 0.23 TCGA-AD-6964-01 11 58391699 58391699 G T CNTF Missense_Mutation p.G103C 0.07 deleterious(0.04) possibly_damaging(0.868) TCGA-AD-6964-01 11 58958609 58958609 A - DTX4 Frame_Shift_Del p.K396Nfs*34 0.21 TCGA-AD-6964-01 11 5906410 5906410 G T OR52E4 Missense_Mutation p.R296S 0.21 deleterious(0) possibly_damaging(0.589) TCGA-AD-6964-01 11 60899548 60899548 C T VPS37C Missense_Mutation p.G271D 0.15 deleterious(0) possibly_damaging(0.744) TCGA-AD-6964-01 11 60899887 60899887 C T VPS37C Missense_Mutation p.R158K 0.26 tolerated(0.17) benign(0.037) TCGA-AD-6964-01 11 61081949 61081949 C T DDB1 Missense_Mutation p.A474T 0.11 tolerated(0.62) benign(0.003) TCGA-AD-6964-01 11 617243 617243 G A CDHR5 3'UTR 0.45 TCGA-AD-6964-01 11 62549404 62549404 G A TAF6L Silent p.G190G 0.17 TCGA-AD-6964-01 11 63488016 63488016 T C RTN3 Missense_Mutation p.M681T 0.23 tolerated(1) benign(0) TCGA-AD-6964-01 11 63885288 63885288 G A FLRT1 Missense_Mutation p.V517I 0.27 tolerated(0.19) benign(0.025) TCGA-AD-6964-01 11 63997081 63997081 C T NUDT22 Intron 0.11 TCGA-AD-6964-01 11 64679371 64679371 A T ATG2A Missense_Mutation p.S391T 0.21 tolerated(0.2) benign(0.405) TCGA-AD-6964-01 11 64888164 64888164 C T FAU Missense_Mutation p.A131T 0.23 deleterious(0.04) possibly_damaging(0.89) TCGA-AD-6964-01 11 65178744 65178744 C T FRMD8 Silent p.R436R 0.10 TCGA-AD-6964-01 11 65408823 65408823 G T SIPA1 Missense_Mutation p.G144V 0.26 deleterious(0.02) benign(0.147) TCGA-AD-6964-01 11 65658977 65658977 T C CCDC85B 3'UTR 0.30 TCGA-AD-6964-01 11 65771228 65771228 C T BANF1 Silent p.C85C 0.09 TCGA-AD-6964-01 11 6592140 6592140 C T DNHD1 Silent p.S4466S 0.19 TCGA-AD-6964-01 11 66130741 66130741 A G RP11-867G23.8 Intron 0.50 TCGA-AD-6964-01 11 66294202 66294202 G T BBS1 Missense_Mutation p.Q421H 0.21 deleterious(0) probably_damaging(0.983) TCGA-AD-6964-01 11 6636782 6636782 G T TPP1 Missense_Mutation p.T386N 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-AD-6964-01 11 66411375 66411375 A T RBM14-RBM4 Silent p.A264A 0.14 TCGA-AD-6964-01 11 66453700 66453700 T C SPTBN2 Intron 0.16 TCGA-AD-6964-01 11 66483313 66483313 C T SPTBN2 Silent p.S99S 0.15 TCGA-AD-6964-01 11 6653534 6653534 A G DCHS1 Missense_Mutation p.L1070P 0.22 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 11 6653654 6653654 C - DCHS1 Frame_Shift_Del p.G1030Afs*31 0.15 TCGA-AD-6964-01 11 67017963 67017963 C T KDM2A Missense_Mutation p.A821V 0.19 tolerated(0.09) possibly_damaging(0.575) TCGA-AD-6964-01 11 67166260 67166260 T C PPP1CA Missense_Mutation p.Y283C 0.29 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-AD-6964-01 11 67810469 67810470 - G TCIRG1 Frame_Shift_Ins p.P161Afs*66 0.21 TCGA-AD-6964-01 11 68524965 68524965 A - CPT1A 3'UTR 0.38 TCGA-AD-6964-01 11 68700900 68700900 T C IGHMBP2 Missense_Mutation p.Y457H 0.09 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 11 6891523 6891523 G A OR10A2 Missense_Mutation p.A180T 0.26 tolerated(0.39) benign(0.011) TCGA-AD-6964-01 11 69978156 69978156 T C ANO1 Missense_Mutation p.V410A 0.25 deleterious(0) benign(0.423) TCGA-AD-6964-01 11 71146750 71146750 G A DHCR7 Missense_Mutation p.R367C 0.41 tolerated(0.06) benign(0.009) TCGA-AD-6964-01 11 71192981 71192981 C T NADSYN1 Silent p.L354L 0.24 TCGA-AD-6964-01 11 71943724 71943724 G A INPPL1 Silent p.Q589Q 0.22 TCGA-AD-6964-01 11 72316212 72316212 G - PDE2A Frame_Shift_Del p.P98Hfs*53 0.24 TCGA-AD-6964-01 11 72409144 72409144 A G ARAP1 Missense_Mutation p.V850A 0.24 deleterious(0) benign(0.01) TCGA-AD-6964-01 11 73008286 73008286 C A P2RY6 Silent p.A241A 0.18 TCGA-AD-6964-01 11 73825472 73825472 T - C2CD3 Frame_Shift_Del p.S563Afs*9 0.08 TCGA-AD-6964-01 11 74546800 74546800 C A RNF169 Silent p.P384P 0.16 TCGA-AD-6964-01 11 7655769 7655769 G A PPFIBP2 Missense_Mutation p.E394K 0.18 tolerated(0.4) benign(0.06) TCGA-AD-6964-01 11 76980055 76980055 G A GDPD4 Missense_Mutation p.P180S 0.07 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 11 77885356 77885356 C A KCTD21 Missense_Mutation p.R82M 0.16 deleterious(0.04) benign(0.246) TCGA-AD-6964-01 11 78574130 78574130 G A TENM4 Nonsense_Mutation p.Q378* 0.22 TCGA-AD-6964-01 11 794874 794874 G A SLC25A22 Silent p.G16G 0.26 TCGA-AD-6964-01 11 82881022 82881022 T C PCF11 Silent p.I1215I 0.33 TCGA-AD-6964-01 11 86111817 86111817 T C CCDC81 Silent p.S285S 0.08 TCGA-AD-6964-01 11 86520374 86520374 T C PRSS23 3'UTR 0.10 TCGA-AD-6964-01 11 89907027 89907027 A G NAALAD2 Silent p.S482S 0.09 TCGA-AD-6964-01 11 92086088 92086088 T A FAT3 Silent p.T270T 0.14 TCGA-AD-6964-01 11 93797524 93797524 G A HEPHL1 Missense_Mutation p.R219Q 0.20 tolerated(0.07) possibly_damaging(0.863) TCGA-AD-6964-01 11 94281322 94281322 T C FUT4 3'UTR 0.12 TCGA-AD-6964-01 11 95512820 95512820 T A FAM76B Missense_Mutation p.T215S 0.12 tolerated(0.83) benign(0.431) TCGA-AD-6964-01 11 96074623 96074623 C T MAML2 Missense_Mutation p.G146D 0.23 probably_damaging(0.959) TCGA-AD-6964-01 11 96098303 96098303 T C CCDC82 Silent p.E407E 0.10 TCGA-AD-6964-01 11 9983587 9983587 C A SBF2 Missense_Mutation p.G593C 0.18 tolerated(0.12) benign(0.021) TCGA-AD-6964-01 12 100774560 100774560 C - SLC17A8 Frame_Shift_Del p.P63Hfs*19 0.18 TCGA-AD-6964-01 12 104719179 104719179 A T TXNRD1 Missense_Mutation p.E427V 0.16 tolerated(0.12) benign(0.016) TCGA-AD-6964-01 12 105150990 105150990 C T CHST11 Silent p.H156H 0.23 TCGA-AD-6964-01 12 106848292 106848292 A T POLR3B Missense_Mutation p.Y699F 0.28 tolerated(0.08) benign(0.049) TCGA-AD-6964-01 12 10786649 10786649 C T STYK1 Missense_Mutation p.V43I 0.17 tolerated(0.34) benign(0.022) TCGA-AD-6964-01 12 108013785 108013785 G A BTBD11 Silent p.T825T 0.18 TCGA-AD-6964-01 12 108128211 108128211 G A PRDM4 Missense_Mutation p.R728W 0.25 deleterious(0) probably_damaging(0.993) TCGA-AD-6964-01 12 108641795 108641795 C T WSCD2 Missense_Mutation p.A458V 0.28 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 12 108931959 108931959 C T SART3 Silent p.K361K 0.11 TCGA-AD-6964-01 12 108939039 108939039 C T SART3 Missense_Mutation p.G202D 0.16 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 12 108957930 108957930 A G ISCU Intron 0.10 TCGA-AD-6964-01 12 10955045 10955045 G A TAS2R7 Missense_Mutation p.A42V 0.06 deleterious(0.04) benign(0.434) TCGA-AD-6964-01 12 110234478 110234478 G A TRPV4 Missense_Mutation p.T395M 0.21 tolerated(0.11) benign(0.043) TCGA-AD-6964-01 12 111760303 111760303 C T CUX2 Missense_Mutation p.R949W 0.25 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 12 111958722 111958722 A G ATXN2 Missense_Mutation p.V411A 0.09 possibly_damaging(0.791) TCGA-AD-6964-01 12 112891129 112891129 G A PTPN11 Missense_Mutation p.D155N 0.23 tolerated(0.08) probably_damaging(0.993) TCGA-AD-6964-01 12 113388545 113388545 T C OAS3 Silent p.V474V 0.12 TCGA-AD-6964-01 12 113515269 113515269 G A DTX1 Silent p.S100S 0.21 TCGA-AD-6964-01 12 114261093 114261093 T C RBM19 Missense_Mutation p.D940G 0.24 deleterious(0.01) benign(0.421) TCGA-AD-6964-01 12 114404094 114404094 A G RBM19 5'UTR 0.20 TCGA-AD-6964-01 12 117705875 117705875 G A NOS1 Silent p.I638I 0.23 TCGA-AD-6964-01 12 120795685 120795685 C T MSI1 Silent p.T156T 0.36 TCGA-AD-6964-01 12 120960114 120960114 C T COQ5 Missense_Mutation p.M85I 0.19 tolerated(0.49) benign(0.065) TCGA-AD-6964-01 12 121131917 121131917 C T MLEC Missense_Mutation p.P87S 0.18 tolerated(0.45) benign(0.029) TCGA-AD-6964-01 12 121426787 121426787 G A HNF1A Missense_Mutation p.A160T 0.10 deleterious(0.03) probably_damaging(0.993) TCGA-AD-6964-01 12 122107285 122107285 G A MORN3 Silent p.G35G 0.20 TCGA-AD-6964-01 12 122441599 122441599 A G WDR66 Missense_Mutation p.T1127A 0.27 deleterious(0) possibly_damaging(0.802) TCGA-AD-6964-01 12 122709075 122709075 G A DIABLO Missense_Mutation p.A56V 0.14 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 12 123087604 123087604 G A KNTC1 Missense_Mutation p.A1639T 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-AD-6964-01 12 123687331 123687331 T C MPHOSPH9 Missense_Mutation p.T389A 0.12 tolerated(0.15) possibly_damaging(0.701) TCGA-AD-6964-01 12 124352471 124352471 T C DNAH10 Silent p.L2324L 0.09 TCGA-AD-6964-01 12 124498604 124498604 C A ZNF664 3'UTR 0.28 TCGA-AD-6964-01 12 125587614 125587614 A G AACS Missense_Mutation p.K252E 0.21 tolerated(0.43) benign(0.024) TCGA-AD-6964-01 12 130647482 130647482 G A FZD10 5'UTR 0.36 TCGA-AD-6964-01 12 130648707 130648707 T C FZD10 Missense_Mutation p.V407A 0.09 tolerated(0.16) benign(0.119) TCGA-AD-6964-01 12 130845841 130845841 G A PIWIL1 Silent p.Q594Q 0.10 TCGA-AD-6964-01 12 130926744 130926744 C T RIMBP2 Missense_Mutation p.V368M 0.22 deleterious(0) probably_damaging(0.915) TCGA-AD-6964-01 12 133249805 133249805 T C POLE Missense_Mutation p.Y473C 0.26 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 12 133294311 133294311 G A PGAM5 Missense_Mutation p.S171N 0.17 tolerated(0.22) benign(0.006) TCGA-AD-6964-01 12 133393135 133393135 T A GOLGA3 Missense_Mutation p.T133S 0.12 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-AD-6964-01 12 133502193 133502193 G A ZNF605 Silent p.S595S 0.23 TCGA-AD-6964-01 12 13722763 13722763 C T GRIN2B Splice_Site p.X787_splice 0.19 TCGA-AD-6964-01 12 14650874 14650874 C T ATF7IP Missense_Mutation p.A1227V 0.17 deleterious_low_confidence(0) unknown(0) TCGA-AD-6964-01 12 14930190 14930190 A G H2AFJ 3'UTR 0.13 TCGA-AD-6964-01 12 1889692 1889694 AGA - ADIPOR2 In_Frame_Del p.K181del 0.09 TCGA-AD-6964-01 12 2058335 2058335 T C DCP1B Missense_Mutation p.I564V 0.15 tolerated(0.52) benign(0.001) TCGA-AD-6964-01 12 21918811 21918811 A G KCNJ8 Missense_Mutation p.L374P 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6964-01 12 21919434 21919434 A C KCNJ8 Silent p.G166G 0.16 TCGA-AD-6964-01 12 22643110 22643110 T C C2CD5 Silent p.V435V 0.10 TCGA-AD-6964-01 12 22676462 22676462 C T C2CD5 Missense_Mutation p.G233E 0.25 deleterious(0) probably_damaging(0.92) TCGA-AD-6964-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.20 deleterious(0.03) possibly_damaging(0.876) TCGA-AD-6964-01 12 2714282 2714282 T C CACNA1C Missense_Mutation p.V1019A 0.17 deleterious(0) probably_damaging(0.966) TCGA-AD-6964-01 12 2927305 2927305 T C ITFG2 Missense_Mutation p.F90L 0.18 tolerated(0.5) benign(0.011) TCGA-AD-6964-01 12 29596301 29596301 T - OVCH1 Frame_Shift_Del p.K1050Nfs*2 0.16 TCGA-AD-6964-01 12 2968463 2968463 G A FOXM1 Missense_Mutation p.R583W 0.29 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 12 30824018 30824018 T - IPO8 Frame_Shift_Del p.I308Ffs*2 0.22 TCGA-AD-6964-01 12 32136061 32136061 T C KIAA1551 Silent p.N724N 0.12 TCGA-AD-6964-01 12 40715921 40715921 C A LRRK2 Missense_Mutation p.S1752Y 0.17 deleterious(0) possibly_damaging(0.855) TCGA-AD-6964-01 12 41374720 41374720 G A CNTN1 Missense_Mutation p.G605D 0.10 deleterious(0.01) probably_damaging(1) TCGA-AD-6964-01 12 42853672 42853672 T C PRICKLE1 Missense_Mutation p.Q812R 0.24 tolerated(0.54) benign(0.135) TCGA-AD-6964-01 12 45270482 45270482 C T NELL2 Silent p.G9G 0.21 TCGA-AD-6964-01 12 45410239 45410239 G A DBX2 Nonsense_Mutation p.Q284* 0.21 TCGA-AD-6964-01 12 46215214 46215214 T - ARID2 Frame_Shift_Del p.S218Pfs*74 0.21 TCGA-AD-6964-01 12 46287514 46287514 A G ARID2 Intron 0.19 TCGA-AD-6964-01 12 46600982 46600982 T G SLC38A1 Silent p.L173L 0.25 TCGA-AD-6964-01 12 4722773 4722773 G A DYRK4 Missense_Mutation p.G473R 0.24 tolerated_low_confidence(0.61) benign(0) TCGA-AD-6964-01 12 48185485 48185485 A T HDAC7 Missense_Mutation p.L606H 0.14 deleterious(0) probably_damaging(0.988) TCGA-AD-6964-01 12 4872441 4872441 A T GALNT8 Missense_Mutation p.D461V 0.17 deleterious(0) possibly_damaging(0.786) TCGA-AD-6964-01 12 48919835 48919835 T C OR8S1 Missense_Mutation p.Y141H 0.08 deleterious(0.02) possibly_damaging(0.852) TCGA-AD-6964-01 12 49418361 49418361 C A KMT2D Missense_Mutation p.R5351L 0.22 unknown(0) TCGA-AD-6964-01 12 49426283 49426283 G C KMT2D Missense_Mutation p.L4069V 0.22 unknown(0) TCGA-AD-6964-01 12 49426880 49426880 T C KMT2D Missense_Mutation p.M3870V 0.23 benign(0.004) TCGA-AD-6964-01 12 49438209 49438209 C T KMT2D Missense_Mutation p.R1687H 0.11 probably_damaging(0.989) TCGA-AD-6964-01 12 49491448 49491448 C T LMBR1L 3'UTR 0.18 TCGA-AD-6964-01 12 49578901 49578901 A G TUBA1A Silent p.G416G 0.18 TCGA-AD-6964-01 12 50847266 50847267 - T LARP4 Frame_Shift_Ins p.A279Cfs*2 0.15 TCGA-AD-6964-01 12 51390685 51390685 C T SLC11A2 Missense_Mutation p.R278H 0.35 deleterious(0.05) benign(0.003) TCGA-AD-6964-01 12 51639958 51639958 A G DAZAP2 3'Flank 0.33 TCGA-AD-6964-01 12 53185502 53185502 C T KRT3 Silent p.R429R 0.15 TCGA-AD-6964-01 12 53680591 53680591 C T ESPL1 Silent p.G1357G 0.08 TCGA-AD-6964-01 12 53880738 53880738 C T MAP3K12 Silent p.Q146Q 0.19 TCGA-AD-6964-01 12 56346661 56346661 A G DGKA Silent p.L629L 0.21 TCGA-AD-6964-01 12 56717590 56717590 C T PAN2 Splice_Site p.X728_splice 0.11 TCGA-AD-6964-01 12 56743438 56743438 G A STAT2 Intron 0.09 TCGA-AD-6964-01 12 56822846 56822846 C T TIMELESS Silent p.E375E 0.24 TCGA-AD-6964-01 12 57038812 57038812 C A ATP5B Intron 0.09 TCGA-AD-6964-01 12 57110594 57110594 G A NACA Intron 0.21 TCGA-AD-6964-01 12 57663759 57663759 G A R3HDM2 Missense_Mutation p.P441S 0.11 deleterious(0.03) benign(0.194) TCGA-AD-6964-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.63 TCGA-AD-6964-01 12 5848535 5848535 A G ANO2 Missense_Mutation p.L457P 0.17 deleterious(0.03) probably_damaging(0.994) TCGA-AD-6964-01 12 59270266 59270266 A G LRIG3 Missense_Mutation p.S886P 0.12 deleterious(0.04) possibly_damaging(0.52) TCGA-AD-6964-01 12 6436542 6436543 - A PLEKHG6 Frame_Shift_Ins p.T599Hfs*71 0.23 TCGA-AD-6964-01 12 65088593 65088593 C A RASSF3 Missense_Mutation p.D206E 0.11 tolerated(0.79) benign(0.057) TCGA-AD-6964-01 12 6572128 6572128 G A VAMP1 3'Flank 0.10 TCGA-AD-6964-01 12 68709891 68709891 A G MDM1 Missense_Mutation p.V383A 0.20 deleterious(0) benign(0.138) TCGA-AD-6964-01 12 69651537 69651537 G A CPSF6 Silent p.G182G 0.08 TCGA-AD-6964-01 12 70048739 70048739 T G BEST3 Missense_Mutation p.K652T 0.09 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-AD-6964-01 12 7050700 7050700 C T ATN1 Silent p.A1174A 0.23 TCGA-AD-6964-01 12 70946620 70946620 C T PTPRB Missense_Mutation p.G1775E 0.10 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 12 7245018 7245018 C A C1R 5'UTR 0.14 TCGA-AD-6964-01 12 72955974 72955974 T C TRHDE Silent p.N561N 0.17 TCGA-AD-6964-01 12 74932643 74932643 T C ATXN7L3B 3'UTR 0.19 TCGA-AD-6964-01 12 7548910 7548910 C T CD163L1 Missense_Mutation p.G611S 0.11 tolerated(0.7) benign(0.27) TCGA-AD-6964-01 12 772642 772642 A C NINJ2 Missense_Mutation p.L8R 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AD-6964-01 12 78400345 78400345 G A NAV3 Missense_Mutation p.A343T 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 12 7848090 7848090 G A GDF3 Missense_Mutation p.R79C 0.10 deleterious(0.01) possibly_damaging(0.88) TCGA-AD-6964-01 12 78582045 78582045 A G NAV3 Silent p.A1914A 0.11 TCGA-AD-6964-01 12 7984225 7984225 C T SLC2A14 Missense_Mutation p.G106R 0.23 deleterious(0.03) probably_damaging(0.933) TCGA-AD-6964-01 12 83289909 83289909 C A TMTC2 Missense_Mutation p.L323I 0.26 tolerated(0.12) possibly_damaging(0.449) TCGA-AD-6964-01 12 85279790 85279790 A - SLC6A15 Frame_Shift_Del p.F116Sfs*21 0.11 TCGA-AD-6964-01 12 85285805 85285805 T C SLC6A15 Missense_Mutation p.D32G 0.25 tolerated(0.15) benign(0.16) TCGA-AD-6964-01 12 85450016 85450016 A - LRRIQ1 Frame_Shift_Del p.N484Mfs*4 0.09 TCGA-AD-6964-01 12 8687228 8687228 C T CLEC4E 3'UTR 0.16 TCGA-AD-6964-01 12 9074289 9074289 A T PHC1 Silent p.L133L 0.18 TCGA-AD-6964-01 12 9259184 9259184 G A A2M Silent p.C299C 0.12 TCGA-AD-6964-01 12 92818751 92818751 A - CLLU1 Frame_Shift_Del p.K100Nfs*37 0.22 TCGA-AD-6964-01 12 94648559 94648559 T C PLXNC1 Intron 0.10 TCGA-AD-6964-01 12 95416130 95416130 T C NR2C1 Missense_Mutation p.T563A 0.23 tolerated(0.7) benign(0.007) TCGA-AD-6964-01 12 95531368 95531368 T C FGD6 Missense_Mutation p.K975R 0.08 tolerated(0.47) benign(0.074) TCGA-AD-6964-01 12 99102460 99102460 T C APAF1 Missense_Mutation p.V940A 0.09 tolerated(1) benign(0.001) TCGA-AD-6964-01 13 100206626 100206626 G T TM9SF2 Missense_Mutation p.K519N 0.24 tolerated(0.73) benign(0.35) TCGA-AD-6964-01 13 102227889 102227889 T A ITGBL1 Missense_Mutation p.I193K 0.05 deleterious(0) benign(0.347) TCGA-AD-6964-01 13 102379044 102379044 T C FGF14 Silent p.L180L 0.13 TCGA-AD-6964-01 13 103297360 103297360 G A TPP2 Splice_Site p.X798_splice 0.17 TCGA-AD-6964-01 13 103387351 103387351 A - CCDC168 Frame_Shift_Del p.L605* 0.10 TCGA-AD-6964-01 13 103387974 103387974 T - CCDC168 Frame_Shift_Del p.M396Cfs*8 0.22 TCGA-AD-6964-01 13 103436774 103436774 A - KDELC1 3'UTR 0.16 TCGA-AD-6964-01 13 108882091 108882091 C T ABHD13 Silent p.Y175Y 0.32 TCGA-AD-6964-01 13 111164511 111164511 C T COL4A2 Silent p.R1704R 0.14 TCGA-AD-6964-01 13 113882344 113882344 C T CUL4A Silent p.D141D 0.18 TCGA-AD-6964-01 13 113975961 113975961 C T LAMP1 Missense_Mutation p.R345C 0.29 tolerated(0.17) possibly_damaging(0.806) TCGA-AD-6964-01 13 114202739 114202739 C T TMCO3 Missense_Mutation p.A631V 0.08 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 13 19751479 19751479 C T TUBA3C Missense_Mutation p.R215H 0.22 tolerated_low_confidence(0.07) benign(0.009) TCGA-AD-6964-01 13 20567731 20567731 T C ZMYM2 Silent p.G173G 0.30 TCGA-AD-6964-01 13 22095397 22095398 - T MICU2 Frame_Shift_Ins p.R195Kfs*5 0.18 TCGA-AD-6964-01 13 23853594 23853594 G A SGCG Missense_Mutation p.G161D 0.31 deleterious(0.01) possibly_damaging(0.558) TCGA-AD-6964-01 13 24242845 24242845 C T TNFRSF19 Missense_Mutation p.A285V 0.17 tolerated_low_confidence(1) benign(0.003) TCGA-AD-6964-01 13 25670902 25670902 A G PABPC3 Missense_Mutation p.E189G 0.22 tolerated(0.06) benign(0.025) TCGA-AD-6964-01 13 25672306 25672306 A - PABPC3 3'UTR 0.26 TCGA-AD-6964-01 13 31797106 31797106 T C B3GALTL Silent p.G46G 0.31 TCGA-AD-6964-01 13 32365987 32365987 G A RXFP2 Missense_Mutation p.R397Q 0.21 tolerated(0.06) possibly_damaging(0.646) TCGA-AD-6964-01 13 32884822 32884822 G A ZAR1L Missense_Mutation p.T234I 0.26 tolerated(0.3) probably_damaging(0.987) TCGA-AD-6964-01 13 32914373 32914373 A G BRCA2 Missense_Mutation p.S1961G 0.10 deleterious(0.04) benign(0.022) TCGA-AD-6964-01 13 37270436 37270436 A C SERTM1 3'UTR 0.08 TCGA-AD-6964-01 13 39613779 39613779 A G NHLRC3 Missense_Mutation p.T106A 0.09 tolerated(0.16) benign(0.098) TCGA-AD-6964-01 13 42703750 42703750 T C DGKH Silent p.N122N 0.22 TCGA-AD-6964-01 13 49649454 49649454 A G FNDC3A Silent p.E43E 0.26 TCGA-AD-6964-01 13 50591131 50591131 G A TRIM13 3'Flank 0.21 TCGA-AD-6964-01 13 52606090 52606090 G C UTP14C 3'UTR 0.28 TCGA-AD-6964-01 13 52661584 52661584 G A NEK5 Missense_Mutation p.R428C 0.26 deleterious(0.01) benign(0.346) TCGA-AD-6964-01 13 52745302 52745302 T C MRPS31P5 RNA 0.08 TCGA-AD-6964-01 13 52952071 52952071 G A THSD1 Silent p.A678A 0.17 TCGA-AD-6964-01 13 77642770 77642770 G A MYCBP2 Missense_Mutation p.A3996V 0.14 probably_damaging(0.98) TCGA-AD-6964-01 13 77700630 77700630 G A MYCBP2 Silent p.C2531C 0.24 TCGA-AD-6964-01 13 78218524 78218524 C T SCEL 3'UTR 0.32 TCGA-AD-6964-01 13 96239823 96239823 C T DZIP1 Missense_Mutation p.E730K 0.36 tolerated(0.07) benign(0.067) TCGA-AD-6964-01 13 96511853 96511853 T A UGGT2 Missense_Mutation p.T1273S 0.07 tolerated(0.18) benign(0.113) TCGA-AD-6964-01 13 98865665 98865665 C T FARP1 Missense_Mutation p.P57S 0.13 tolerated(0.33) benign(0.006) TCGA-AD-6964-01 14 101005324 101005324 C T BEGAIN Missense_Mutation p.G255D 0.43 tolerated(0.34) possibly_damaging(0.628) TCGA-AD-6964-01 14 101349643 101349643 C T RTL1 Missense_Mutation p.V495I 0.26 tolerated(0.39) benign(0.006) TCGA-AD-6964-01 14 102508808 102508808 C T DYNC1H1 Silent p.C4121C 0.17 TCGA-AD-6964-01 14 103599852 103599852 C T TNFAIP2 Missense_Mutation p.H567Y 0.21 tolerated(0.1) benign(0.044) TCGA-AD-6964-01 14 104206616 104206616 C T PPP1R13B Missense_Mutation p.E713K 0.12 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 14 105411255 105411255 G A AHNAK2 Silent p.S3511S 0.20 TCGA-AD-6964-01 14 105715621 105715621 G A BRF1 Intron 0.36 TCGA-AD-6964-01 14 105929578 105929578 G A MTA1 Missense_Mutation p.D334N 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-AD-6964-01 14 106208025 106208025 T C IGHG1 Missense_Mutation p.I260V 0.22 tolerated(0.07) benign(0.048) TCGA-AD-6964-01 14 106370563 106370563 G A IGHD3-9 Nonsense_Mutation p.R3* 0.20 TCGA-AD-6964-01 14 106780938 106780938 T A IGHV4-28 Missense_Mutation p.H3L 0.18 tolerated(0.66) benign(0.002) TCGA-AD-6964-01 14 20248974 20248974 C T OR4M1 Nonsense_Mutation p.R165* 0.24 TCGA-AD-6964-01 14 20404435 20404435 G T OR4K1 Missense_Mutation p.G204C 0.24 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 14 20825916 20825916 A G PARP2 Missense_Mutation p.Y571C 0.09 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 14 20925372 20925372 G A APEX1 Missense_Mutation p.R221H 0.24 tolerated(0.09) possibly_damaging(0.658) TCGA-AD-6964-01 14 21464382 21464382 C T METTL17 Silent p.L337L 0.25 TCGA-AD-6964-01 14 22102477 22102477 A G OR10G2 Silent p.C174C 0.22 TCGA-AD-6964-01 14 23299155 23299155 T C MRPL52 Intron 0.15 TCGA-AD-6964-01 14 23375466 23375466 C T RBM23 Silent p.S113S 0.38 TCGA-AD-6964-01 14 24632181 24632181 G A IRF9 Missense_Mutation p.A63T 0.16 deleterious(0) probably_damaging(0.973) TCGA-AD-6964-01 14 24740111 24740111 C T RABGGTA Missense_Mutation p.A16T 0.27 tolerated(0.1) possibly_damaging(0.511) TCGA-AD-6964-01 14 24884849 24884849 G A NYNRIN Silent p.L1298L 0.21 TCGA-AD-6964-01 14 24884857 24884857 T G NYNRIN Missense_Mutation p.F1301C 0.20 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-AD-6964-01 14 34268947 34268947 C T NPAS3 Silent p.N478N 0.17 TCGA-AD-6964-01 14 35780078 35780078 C T PSMA6 Missense_Mutation p.A129V 0.22 deleterious(0.02) probably_damaging(0.952) TCGA-AD-6964-01 14 36986603 36986603 G A NKX2-1 Silent p.H362H 0.48 TCGA-AD-6964-01 14 37754542 37754542 T C MIPOL1 Silent p.Y171Y 0.09 TCGA-AD-6964-01 14 39645301 39645301 C T PNN Silent p.L45L 0.24 TCGA-AD-6964-01 14 44975433 44975433 G A FSCB Missense_Mutation p.A253V 0.30 tolerated(0.41) possibly_damaging(0.733) TCGA-AD-6964-01 14 45696029 45696029 C T MIS18BP1 Missense_Mutation p.G586E 0.12 tolerated(0.39) benign(0.01) TCGA-AD-6964-01 14 50626601 50626601 A T SOS2 Missense_Mutation p.I467N 0.23 deleterious(0) possibly_damaging(0.905) TCGA-AD-6964-01 14 51190080 51190080 G A NIN 3'Flank 0.33 TCGA-AD-6964-01 14 59942664 59942664 C A L3HYPDH Missense_Mutation p.G288W 0.19 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 14 60193884 60193884 G A RTN1 Silent p.A506A 0.26 TCGA-AD-6964-01 14 63671699 63671699 C T RHOJ Silent p.L38L 0.26 TCGA-AD-6964-01 14 64557767 64557767 G A SYNE2 Splice_Site p.X3992_splice 0.25 TCGA-AD-6964-01 14 64676271 64676271 C T SYNE2 Missense_Mutation p.A6172V 0.19 benign(0.104) TCGA-AD-6964-01 14 64938960 64938960 T C AKAP5 3'UTR 0.24 TCGA-AD-6964-01 14 67940155 67940155 G A TMEM229B Silent p.G162G 0.16 TCGA-AD-6964-01 14 69619498 69619498 G A DCAF5 Silent p.G66G 0.13 TCGA-AD-6964-01 14 69707602 69707602 A T EXD2 Missense_Mutation p.I551F 0.17 deleterious(0.01) possibly_damaging(0.635) TCGA-AD-6964-01 14 72976943 72976943 G C RGS6 Missense_Mutation p.Q349H 0.12 tolerated(0.3) possibly_damaging(0.523) TCGA-AD-6964-01 14 73987739 73987739 G A HEATR4 Missense_Mutation p.P296S 0.24 tolerated(0.06) benign(0.275) TCGA-AD-6964-01 14 74008278 74008278 G T ACOT1 Missense_Mutation p.G180V 0.28 deleterious(0) possibly_damaging(0.546) TCGA-AD-6964-01 14 74973914 74973914 C T LTBP2 Missense_Mutation p.G1292D 0.23 deleterious(0.03) probably_damaging(1) TCGA-AD-6964-01 14 75376524 75376524 C T RPS6KL1 Missense_Mutation p.R331K 0.19 tolerated(0.27) benign(0.405) TCGA-AD-6964-01 14 76147930 76147930 G A TTLL5 Missense_Mutation p.R75H 0.26 deleterious(0) possibly_damaging(0.883) TCGA-AD-6964-01 14 81662539 81662539 G T GTF2A1 Silent p.I175I 0.12 TCGA-AD-6964-01 14 88652021 88652021 T - KCNK10 Frame_Shift_Del p.K497Rfs*13 0.10 TCGA-AD-6964-01 14 95562799 95562799 T - DICER1 Frame_Shift_Del p.K1486Nfs*4 0.18 TCGA-AD-6964-01 14 96790256 96790256 C T ATG2B Silent p.S839S 0.15 TCGA-AD-6964-01 15 101606368 101606368 C T LRRK1 Missense_Mutation p.A1909V 0.19 tolerated(0.13) probably_damaging(0.999) TCGA-AD-6964-01 15 20644326 20644326 T C HERC2P3 RNA 0.19 TCGA-AD-6964-01 15 27188542 27188542 G A GABRA5 Missense_Mutation p.G353D 0.25 tolerated(0.08) probably_damaging(1) TCGA-AD-6964-01 15 28370231 28370231 T C HERC2 Missense_Mutation p.N4304S 0.13 benign(0.361) TCGA-AD-6964-01 15 28412847 28412847 T C HERC2 Missense_Mutation p.T3514A 0.32 benign(0.001) TCGA-AD-6964-01 15 28493789 28493789 A G HERC2 Silent p.S1048S 0.12 TCGA-AD-6964-01 15 28508102 28508102 T A HERC2 Missense_Mutation p.E695V 0.12 possibly_damaging(0.894) TCGA-AD-6964-01 15 31197248 31197248 T C FAN1 Missense_Mutation p.Y128H 0.19 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 15 31206063 31206063 C T FAN1 Missense_Mutation p.A527V 0.20 tolerated(0.21) probably_damaging(0.998) TCGA-AD-6964-01 15 31295264 31295264 A G TRPM1 Silent p.N1230N 0.21 TCGA-AD-6964-01 15 32915790 32915790 G A ARHGAP11A Splice_Site p.X99_splice 0.21 TCGA-AD-6964-01 15 34152815 34152815 C T RYR3 Silent p.F4773F 0.24 TCGA-AD-6964-01 15 34648168 34648168 G T NUTM1 Missense_Mutation p.Q625H 0.27 deleterious(0) possibly_damaging(0.907) TCGA-AD-6964-01 15 34657307 34657307 G A LPCAT4 Missense_Mutation p.A127V 0.13 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 15 35044832 35044832 T C GJD2 Silent p.E271E 0.08 TCGA-AD-6964-01 15 37329105 37329105 C T MEIS2 Silent p.P270P 0.18 TCGA-AD-6964-01 15 40648424 40648424 C - PHGR1 Frame_Shift_Del p.H59Tfs*49 0.17 TCGA-AD-6964-01 15 41192325 41192325 C T VPS18 Missense_Mutation p.R437C 0.13 deleterious(0) possibly_damaging(0.676) TCGA-AD-6964-01 15 41624723 41624723 C T OIP5 Missense_Mutation p.A13T 0.29 tolerated_low_confidence(0.14) benign(0.004) TCGA-AD-6964-01 15 41797953 41797953 G T LTK Missense_Mutation p.P552H 0.26 tolerated_low_confidence(0.61) benign(0.003) TCGA-AD-6964-01 15 42137045 42137045 G T PLA2G4B Splice_Site p.X570_splice 0.17 TCGA-AD-6964-01 15 42246059 42246059 C T EHD4 Missense_Mutation p.G106R 0.20 deleterious(0.02) probably_damaging(0.939) TCGA-AD-6964-01 15 42379556 42379556 T C PLA2G4D Missense_Mutation p.D66G 0.24 deleterious(0) benign(0.314) TCGA-AD-6964-01 15 42551095 42551095 G A TMEM87A Intron 0.08 TCGA-AD-6964-01 15 43697583 43697583 A G TUBGCP4 3'UTR 0.26 TCGA-AD-6964-01 15 44065327 44065327 T C ELL3 Missense_Mutation p.N394S 0.22 deleterious(0.01) possibly_damaging(0.501) TCGA-AD-6964-01 15 44090663 44090663 A G SERINC4 Silent p.C166C 0.08 TCGA-AD-6964-01 15 48056925 48056925 T C SEMA6D Silent p.H396H 0.18 TCGA-AD-6964-01 15 48428985 48428985 C T SLC24A5 Silent p.C232C 0.09 TCGA-AD-6964-01 15 48707816 48707816 C A FBN1 Missense_Mutation p.Q2656H 0.21 benign(0.159) TCGA-AD-6964-01 15 48766554 48766554 C A FBN1 Nonsense_Mutation p.G1370* 0.38 TCGA-AD-6964-01 15 48818447 48818447 C T FBN1 Missense_Mutation p.D290N 0.27 probably_damaging(0.952) TCGA-AD-6964-01 15 50884273 50884273 A G TRPM7 Missense_Mutation p.S1387P 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-AD-6964-01 15 52515815 52515815 T C MYO5C Missense_Mutation p.K1185E 0.23 tolerated(0.1) benign(0.103) TCGA-AD-6964-01 15 52539684 52539684 T C MYO5C Missense_Mutation p.K618E 0.08 deleterious(0.04) probably_damaging(0.982) TCGA-AD-6964-01 15 52571806 52571806 G A MYO5C Silent p.G68G 0.36 TCGA-AD-6964-01 15 55652399 55652399 T - CCPG1 Frame_Shift_Del p.K524Nfs*118 0.22 TCGA-AD-6964-01 15 59911845 59911845 G A GCNT3 3'UTR 0.08 TCGA-AD-6964-01 15 62211609 62211609 G T VPS13C Missense_Mutation p.A2506D 0.19 tolerated(0.31) benign(0.003) TCGA-AD-6964-01 15 62250829 62250829 C T VPS13C Silent p.V1381V 0.18 TCGA-AD-6964-01 15 62361617 62361617 A G C2CD4A 3'UTR 0.33 TCGA-AD-6964-01 15 63594626 63594626 C A APH1B Silent p.G187G 0.23 TCGA-AD-6964-01 15 64422125 64422125 C T SNX1 Missense_Mutation p.A273V 0.25 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 15 65107942 65107942 T C PIF1 3'UTR 0.20 TCGA-AD-6964-01 15 65112166 65112166 G A PIF1 Missense_Mutation p.R405C 0.27 deleterious(0.02) possibly_damaging(0.906) TCGA-AD-6964-01 15 65262525 65262526 - T SPG21 Frame_Shift_Ins p.I163Nfs*17 0.25 TCGA-AD-6964-01 15 65447160 65447160 G A CLPX Missense_Mutation p.A524V 0.14 deleterious(0.02) probably_damaging(0.919) TCGA-AD-6964-01 15 67793167 67793167 G - IQCH 3'UTR 0.18 TCGA-AD-6964-01 15 69222899 69222899 A G SPESP1 5'UTR 0.08 TCGA-AD-6964-01 15 69238888 69238888 A G SPESP1 Missense_Mutation p.R339G 0.28 deleterious(0.05) benign(0.018) TCGA-AD-6964-01 15 76146817 76146819 AAC - UBE2Q2 In_Frame_Del p.N93del 0.15 TCGA-AD-6964-01 15 77236185 77236185 G A RCN2 Silent p.E178E 0.13 TCGA-AD-6964-01 15 78894052 78894052 G A CHRNA3 Missense_Mutation p.T311I 0.09 deleterious(0.01) probably_damaging(1) TCGA-AD-6964-01 15 78909415 78909415 G A CHRNA3 Missense_Mutation p.R110C 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-AD-6964-01 15 79327535 79327535 A - RASGRF1 Frame_Shift_Del p.L299Yfs*9 0.16 TCGA-AD-6964-01 15 79589727 79589727 T - ANKRD34C 3'UTR 0.11 TCGA-AD-6964-01 15 81172168 81172168 G A KIAA1199 Missense_Mutation p.G118D 0.24 tolerated(0.05) probably_damaging(0.911) TCGA-AD-6964-01 15 82336260 82336260 G T MEX3B Missense_Mutation p.D317E 0.26 tolerated(0.08) possibly_damaging(0.525) TCGA-AD-6964-01 15 83328455 83328455 C A AP3B2 Missense_Mutation p.G1036W 0.11 deleterious(0) probably_damaging(0.965) TCGA-AD-6964-01 15 85165763 85165763 T C ZSCAN2 3'UTR 0.06 TCGA-AD-6964-01 15 89060026 89060026 C A DET1 Missense_Mutation p.D495Y 0.23 deleterious(0) probably_damaging(0.982) TCGA-AD-6964-01 15 89698703 89698703 T C ABHD2 Missense_Mutation p.V159A 0.12 deleterious(0.03) benign(0.373) TCGA-AD-6964-01 15 90227160 90227160 C A PEX11A Silent p.V64V 0.31 TCGA-AD-6964-01 15 90623130 90623130 C T ZNF710 3'UTR 0.44 TCGA-AD-6964-01 15 91026675 91026675 C T IQGAP1 Missense_Mutation p.A1213V 0.22 deleterious(0.04) benign(0.04) TCGA-AD-6964-01 15 91551121 91551121 T G VPS33B Missense_Mutation p.E159D 0.22 tolerated(0.33) benign(0.023) TCGA-AD-6964-01 15 95001435 95001435 G A MCTP2 Missense_Mutation p.V774I 0.28 tolerated(1) benign(0.002) TCGA-AD-6964-01 15 99678198 99678198 T C TTC23 3'UTR 0.18 TCGA-AD-6964-01 16 11362995 11362995 C T TNP2 Missense_Mutation p.R42H 0.28 tolerated(0.3) possibly_damaging(0.812) TCGA-AD-6964-01 16 11650407 11650407 C T LITAF Silent p.S60S 0.16 TCGA-AD-6964-01 16 1265376 1265376 G A CACNA1H Splice_Site p.X1725_splice 0.13 TCGA-AD-6964-01 16 1270897 1270897 G A CACNA1H Missense_Mutation p.R2322Q 0.20 tolerated_low_confidence(0.41) benign(0.001) TCGA-AD-6964-01 16 1417804 1417804 G - UNKL Frame_Shift_Del p.S545Afs*6 0.12 TCGA-AD-6964-01 16 15180221 15180221 C T RRN3 Splice_Site p.X114_splice 0.05 TCGA-AD-6964-01 16 15224106 15224106 C T RP11-1186N24.5 RNA 0.11 TCGA-AD-6964-01 16 1557625 1557625 C T TELO2 Missense_Mutation p.S772L 0.15 tolerated(0.23) benign(0.241) TCGA-AD-6964-01 16 15719360 15719361 - T KIAA0430 Frame_Shift_Ins p.L608Tfs*2 0.15 TCGA-AD-6964-01 16 15727614 15727615 - A KIAA0430 Frame_Shift_Ins p.P365Sfs*15 0.09 TCGA-AD-6964-01 16 15841548 15841548 C T MYH11 Missense_Mutation p.G771R 0.29 probably_damaging(1) TCGA-AD-6964-01 16 1825968 1825968 C - EME2 Frame_Shift_Del p.R319Afs*48 0.32 TCGA-AD-6964-01 16 1872941 1872941 G T HAGH Silent p.T58T 0.35 TCGA-AD-6964-01 16 19128810 19128810 C T ITPRIPL2 3'UTR 0.11 TCGA-AD-6964-01 16 2012587 2012587 G A RPS2 Missense_Mutation p.A207V 0.34 deleterious(0.05) possibly_damaging(0.7) TCGA-AD-6964-01 16 2027139 2027139 C T TBL3 Missense_Mutation p.P509S 0.23 tolerated(1) benign(0.013) TCGA-AD-6964-01 16 21069482 21069482 T C DNAH3 Silent p.G1283G 0.08 TCGA-AD-6964-01 16 21136675 21136675 C T DNAH3 Missense_Mutation p.A409T 0.25 tolerated(0.27) benign(0.052) TCGA-AD-6964-01 16 21156623 21156623 G A DNAH3 Silent p.S109S 0.28 TCGA-AD-6964-01 16 2149887 2149887 C T PKD1 Missense_Mutation p.G3300R 0.28 benign(0.419) TCGA-AD-6964-01 16 2223810 2223810 G A TRAF7 Missense_Mutation p.A370T 0.20 tolerated(0.14) benign(0.095) TCGA-AD-6964-01 16 22326436 22326436 G A POLR3E Silent p.E183E 0.16 TCGA-AD-6964-01 16 2326694 2326694 G A ABCA3 Missense_Mutation p.T1699I 0.27 deleterious(0.04) benign(0.088) TCGA-AD-6964-01 16 23546257 23546257 G A EARS2 Missense_Mutation p.P304S 0.28 deleterious(0.03) possibly_damaging(0.859) TCGA-AD-6964-01 16 23702651 23702651 G A ERN2 Silent p.H872H 0.16 TCGA-AD-6964-01 16 24185841 24185841 T C PRKCB Missense_Mutation p.F445S 0.09 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 16 2770169 2770169 G T PRSS27 5'UTR 0.29 TCGA-AD-6964-01 16 2835816 2835816 C T PRSS33 Missense_Mutation p.A76T 0.29 deleterious(0) probably_damaging(0.986) TCGA-AD-6964-01 16 2849490 2849490 G A SNORA3 5'Flank 0.09 TCGA-AD-6964-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.15 TCGA-AD-6964-01 16 28912073 28912075 GAG - ATP2A1 In_Frame_Del p.E647del 0.38 TCGA-AD-6964-01 16 28995683 28995683 G A SPNS1 3'UTR 0.24 TCGA-AD-6964-01 16 29755754 29755754 C T C16orf54 Silent p.E173E 0.31 TCGA-AD-6964-01 16 2983207 2983207 G T FLYWCH1 Missense_Mutation p.K290N 0.24 deleterious(0) benign(0.058) TCGA-AD-6964-01 16 2983574 2983574 G A FLYWCH1 Missense_Mutation p.A413T 0.19 tolerated(0.52) benign(0.167) TCGA-AD-6964-01 16 29974607 29974607 T C TMEM219 Missense_Mutation p.L48P 0.10 deleterious(0) probably_damaging(0.947) TCGA-AD-6964-01 16 29997897 29997897 C T TAOK2 Silent p.G768G 0.12 TCGA-AD-6964-01 16 30037938 30037938 G A FAM57B Missense_Mutation p.L146F 0.34 deleterious(0.01) possibly_damaging(0.702) TCGA-AD-6964-01 16 30094990 30094990 C T PPP4C Silent p.H164H 0.33 TCGA-AD-6964-01 16 30106759 30106759 C T YPEL3 Silent p.R15R 0.21 TCGA-AD-6964-01 16 30582874 30582874 A G ZNF688 Missense_Mutation p.V26A 0.24 deleterious(0) possibly_damaging(0.492) TCGA-AD-6964-01 16 30666089 30666089 G T PRR14 Silent p.T266T 0.31 TCGA-AD-6964-01 16 30723392 30723392 A G SRCAP Missense_Mutation p.T577A 0.12 unknown(0) TCGA-AD-6964-01 16 30780626 30780626 A G RNF40 Silent p.L789L 0.20 TCGA-AD-6964-01 16 31004515 31004515 T C STX1B Missense_Mutation p.D241G 0.18 tolerated(0.1) probably_damaging(0.985) TCGA-AD-6964-01 16 31160517 31160517 C - PRSS36 Frame_Shift_Del p.G50Afs*13 0.17 TCGA-AD-6964-01 16 31485234 31485234 T C TGFB1I1 Silent p.G87G 0.09 TCGA-AD-6964-01 16 31498656 31498656 T C SLC5A2 Missense_Mutation p.L197P 0.33 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 16 3458813 3458813 A G ZNF174 Missense_Mutation p.Q373R 0.12 tolerated(0.23) probably_damaging(0.995) TCGA-AD-6964-01 16 3779538 3779538 T C CREBBP Missense_Mutation p.K1837R 0.17 unknown(0) TCGA-AD-6964-01 16 4431830 4431830 G A VASN Missense_Mutation p.V318I 0.26 tolerated(0.31) benign(0.026) TCGA-AD-6964-01 16 46638005 46638005 C T SHCBP1 Missense_Mutation p.R325H 0.32 tolerated(0.05) possibly_damaging(0.488) TCGA-AD-6964-01 16 4764131 4764131 C T ANKS3 Silent p.K210K 0.22 TCGA-AD-6964-01 16 4777143 4777143 C T ANKS3 Missense_Mutation p.G69D 0.26 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 16 48395897 48395897 A T SIAH1 Missense_Mutation p.L179Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 16 48396098 48396098 G T SIAH1 Missense_Mutation p.S112Y 0.12 deleterious(0.01) probably_damaging(0.919) TCGA-AD-6964-01 16 49669611 49669611 C T ZNF423 Missense_Mutation p.S1151N 0.30 tolerated(0.2) benign(0.003) TCGA-AD-6964-01 16 5047008 5047008 G A SEC14L5 Silent p.E311E 0.12 TCGA-AD-6964-01 16 50745331 50745331 G - NOD2 Frame_Shift_Del p.S506Pfs*11 0.15 TCGA-AD-6964-01 16 55601212 55601212 G T CAPNS2 Missense_Mutation p.G182C 0.15 deleterious(0.03) possibly_damaging(0.9) TCGA-AD-6964-01 16 56362683 56362683 G A GNAO1 Silent p.Q148Q 0.34 TCGA-AD-6964-01 16 56995960 56995960 G A CETP Silent p.S23S 0.17 TCGA-AD-6964-01 16 57060195 57060196 - C NLRC5 Frame_Shift_Ins p.G450Wfs*105 0.14 TCGA-AD-6964-01 16 57088670 57088670 C T NLRC5 Nonsense_Mutation p.Q1172* 0.18 TCGA-AD-6964-01 16 57989264 57989264 C T CNGB1 Intron 0.22 TCGA-AD-6964-01 16 58147865 58147865 A G C16orf80 3'UTR 0.29 TCGA-AD-6964-01 16 618994 618994 G - PIGQ 5'Flank 0.25 TCGA-AD-6964-01 16 66545798 66545798 T C TK2 3'UTR 0.19 TCGA-AD-6964-01 16 66613964 66613964 A G CMTM2 Silent p.S107S 0.11 TCGA-AD-6964-01 16 66643347 66643347 C T CMTM3 Missense_Mutation p.R105C 0.38 deleterious(0.05) possibly_damaging(0.565) TCGA-AD-6964-01 16 67006571 67006571 C A CES3 Missense_Mutation p.A481D 0.28 tolerated(0.34) probably_damaging(1) TCGA-AD-6964-01 16 67199626 67199626 T G HSF4 Silent p.G79G 0.15 TCGA-AD-6964-01 16 67214417 67214417 G A KIAA0895L Nonsense_Mutation p.R33* 0.23 TCGA-AD-6964-01 16 67271642 67271643 - T FHOD1 Frame_Shift_Ins p.L225Afs*46 0.19 TCGA-AD-6964-01 16 67271993 67271993 C T FHOD1 Missense_Mutation p.G196R 0.18 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 16 67323445 67323445 G A KCTD19 3'UTR 0.21 TCGA-AD-6964-01 16 67416068 67416068 A T LRRC36 Missense_Mutation p.M655L 0.14 tolerated(0.65) benign(0.003) TCGA-AD-6964-01 16 67682036 67682036 A G RLTPR Missense_Mutation p.R385G 0.19 tolerated(0.25) benign(0.011) TCGA-AD-6964-01 16 67685912 67685912 G A RLTPR Splice_Site p.X892_splice 0.32 TCGA-AD-6964-01 16 67697663 67697663 G - ENKD1 Frame_Shift_Del p.R214Gfs*14 0.34 TCGA-AD-6964-01 16 67778214 67778214 T C RANBP10 Missense_Mutation p.Y182C 0.11 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 16 67918831 67918831 T C NRN1L Missense_Mutation p.C9R 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-AD-6964-01 16 68000656 68000656 C T SLC12A4 Intron 0.38 TCGA-AD-6964-01 16 68844126 68844126 C T CDH1 Silent p.N238N 0.24 TCGA-AD-6964-01 16 68857418 68857418 G A CDH1 Missense_Mutation p.V685M 0.32 deleterious(0.01) benign(0.354) TCGA-AD-6964-01 16 69167422 69167422 C T CIRH1A Silent p.R20R 0.10 TCGA-AD-6964-01 16 69350148 69350148 G A VPS4A Missense_Mutation p.A52T 0.14 tolerated(0.23) benign(0.034) TCGA-AD-6964-01 16 69353308 69353308 G A VPS4A Missense_Mutation p.R161Q 0.38 deleterious(0.05) benign(0.062) TCGA-AD-6964-01 16 70154507 70154507 G A PDPR Missense_Mutation p.A38T 0.13 tolerated(0.57) benign(0.001) TCGA-AD-6964-01 16 70698034 70698034 G A MTSS1L Missense_Mutation p.T597M 0.27 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 16 70699378 70699378 G A MTSS1L Silent p.S373S 0.16 TCGA-AD-6964-01 16 71571151 71571151 C T CHST4 Silent p.L191L 0.17 TCGA-AD-6964-01 16 71894133 71894133 G A ZNF821 Missense_Mutation p.L343F 0.27 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 16 71894304 71894304 C T ZNF821 Missense_Mutation p.D286N 0.18 tolerated(0.07) probably_damaging(0.939) TCGA-AD-6964-01 16 71956538 71956538 G A IST1 Missense_Mutation p.M251I 0.21 tolerated(0.43) benign(0.065) TCGA-AD-6964-01 16 72094854 72094854 C T HP 3'UTR 0.27 TCGA-AD-6964-01 16 72132837 72132837 G A DHX38 Missense_Mutation p.G259D 0.20 tolerated(0.32) benign(0) TCGA-AD-6964-01 16 7382864 7382864 C T RBFOX1 5'UTR 0.31 TCGA-AD-6964-01 16 74425674 74425674 C A NPIPB15 Missense_Mutation p.P343H 0.08 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AD-6964-01 16 76486518 76486518 T - CNTNAP4 Frame_Shift_Del p.Q324Nfs*18 0.13 TCGA-AD-6964-01 16 77240399 77240399 T C SYCE1L Splice_Site p.X41_splice 0.12 TCGA-AD-6964-01 16 78143679 78143679 G A WWOX Silent p.L59L 0.24 TCGA-AD-6964-01 16 78466617 78466617 T C WWOX Missense_Mutation p.F342L 0.09 deleterious(0.02) benign(0.151) TCGA-AD-6964-01 16 837127 837127 C T RPUSD1 Missense_Mutation p.R120K 0.18 tolerated(1) benign(0.001) TCGA-AD-6964-01 16 84014677 84014677 C T NECAB2 Missense_Mutation p.A135V 0.08 deleterious(0) probably_damaging(0.914) TCGA-AD-6964-01 16 84212624 84212624 C T TAF1C Missense_Mutation p.A845T 0.29 tolerated(0.21) benign(0.011) TCGA-AD-6964-01 16 84691083 84691083 C T KLHL36 Missense_Mutation p.R224C 0.19 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 16 84693512 84693512 C T KLHL36 Silent p.A428A 0.27 TCGA-AD-6964-01 16 84793052 84793052 T C USP10 Silent p.C456C 0.16 TCGA-AD-6964-01 16 855637 855637 G A PRR25 Nonsense_Mutation p.W65* 0.16 TCGA-AD-6964-01 16 85699663 85699663 C T GSE1 Missense_Mutation p.A947V 0.27 tolerated(0.47) benign(0.005) TCGA-AD-6964-01 16 87677908 87677908 G A JPH3 Missense_Mutation p.G143S 0.36 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 16 88643634 88643634 G T ZC3H18 Missense_Mutation p.D35Y 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-AD-6964-01 16 88781473 88781473 G A CTU2 Silent p.L479L 0.21 TCGA-AD-6964-01 16 88880868 88880868 C A GALNS Missense_Mutation p.K516N 0.22 tolerated_low_confidence(0.48) benign(0.039) TCGA-AD-6964-01 16 8953107 8953107 G A CARHSP1 Missense_Mutation p.R27C 0.25 deleterious(0) probably_damaging(0.93) TCGA-AD-6964-01 16 89807205 89807205 G A FANCA Intron 0.07 TCGA-AD-6964-01 17 10209936 10209936 A G MYH13 Missense_Mutation p.M1769T 0.09 deleterious(0.02) benign(0.212) TCGA-AD-6964-01 17 10429120 10429120 C T MYH2 Missense_Mutation p.E1421K 0.31 deleterious(0) probably_damaging(0.937) TCGA-AD-6964-01 17 10532942 10532942 G A MYH3 Missense_Mutation p.A1923V 0.23 tolerated(0.37) benign(0.101) TCGA-AD-6964-01 17 12647590 12647590 C - MYOCD Frame_Shift_Del p.P271Qfs*46 0.15 TCGA-AD-6964-01 17 12855819 12855819 G A ARHGAP44 Missense_Mutation p.V353I 0.16 tolerated(1) benign(0.001) TCGA-AD-6964-01 17 1516509 1516509 T A SLC43A2 Missense_Mutation p.M161L 0.08 tolerated(1) benign(0.002) TCGA-AD-6964-01 17 16735073 16735073 G A KRT16P2 RNA 0.10 TCGA-AD-6964-01 17 17106004 17106004 G A PLD6 3'UTR 0.17 TCGA-AD-6964-01 17 17119777 17119777 C T FLCN Missense_Mutation p.S406N 0.20 deleterious(0.04) benign(0.055) TCGA-AD-6964-01 17 17900842 17900842 G A LRRC48 Missense_Mutation p.R298Q 0.26 deleterious(0) probably_damaging(0.94) TCGA-AD-6964-01 17 18150284 18150284 A G FLII Missense_Mutation p.L920P 0.12 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 17 18156968 18156968 G A FLII Missense_Mutation p.R249C 0.35 deleterious(0.03) benign(0.017) TCGA-AD-6964-01 17 20149241 20149241 C A SPECC1 Missense_Mutation p.P785H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.764) TCGA-AD-6964-01 17 21322942 21322942 C - KCNJ12 3'UTR 0.24 TCGA-AD-6964-01 17 2595945 2595945 C T CLUH Missense_Mutation p.A1081T 0.11 tolerated(0.07) benign(0.406) TCGA-AD-6964-01 17 26675073 26675073 C T POLDIP2 3'UTR 0.32 TCGA-AD-6964-01 17 26905754 26905754 T C SPAG5 Missense_Mutation p.Q1045R 0.12 deleterious(0) benign(0.243) TCGA-AD-6964-01 17 27402362 27402362 G A TIAF1 5'UTR 0.12 TCGA-AD-6964-01 17 27426770 27426770 C T MYO18A Missense_Mutation p.R1173Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 17 27948317 27948317 G A CORO6 Silent p.A41A 0.35 TCGA-AD-6964-01 17 29662016 29662016 T C NF1 Silent p.S1991S 0.14 TCGA-AD-6964-01 17 29848944 29848944 C T RAB11FIP4 Missense_Mutation p.T257M 0.26 tolerated(0.05) probably_damaging(0.996) TCGA-AD-6964-01 17 2995686 2995686 G A OR1D2 Missense_Mutation p.T202I 0.12 tolerated(0.18) possibly_damaging(0.794) TCGA-AD-6964-01 17 32483386 32483386 G A ASIC2 Silent p.L56L 0.21 TCGA-AD-6964-01 17 33331331 33331331 C T LIG3 Missense_Mutation p.P946S 0.11 tolerated(0.18) benign(0.02) TCGA-AD-6964-01 17 33586034 33586034 C T SLFN5 Missense_Mutation p.P109S 0.28 tolerated(0.76) benign(0.031) TCGA-AD-6964-01 17 33875867 33875867 G A SLFN14 Silent p.H710H 0.15 TCGA-AD-6964-01 17 33903143 33903143 G T PEX12 Silent p.S246S 0.22 TCGA-AD-6964-01 17 3445971 3445971 G A TRPV3 Missense_Mutation p.T163M 0.27 deleterious(0.01) probably_damaging(0.959) TCGA-AD-6964-01 17 36486676 36486676 T C GPR179 Missense_Mutation p.R926G 0.28 deleterious(0) benign(0.193) TCGA-AD-6964-01 17 36918704 36918704 T C PSMB3 Missense_Mutation p.L172P 0.22 deleterious(0) probably_damaging(0.986) TCGA-AD-6964-01 17 37985668 37985668 G A IKZF3 Silent p.G45G 0.12 TCGA-AD-6964-01 17 38031528 38031528 T - ZPBP2 Frame_Shift_Del p.R246Gfs*27 0.21 TCGA-AD-6964-01 17 38172758 38172758 C T CSF3 Silent p.L111L 0.19 TCGA-AD-6964-01 17 39023275 39023275 C - KRT12 Frame_Shift_Del p.G55Efs*56 0.23 TCGA-AD-6964-01 17 39253492 39253492 A - KRTAP4-8 3'UTR 0.36 TCGA-AD-6964-01 17 39538384 39538384 C T KRT34 Missense_Mutation p.A81T 0.35 tolerated(0.08) benign(0.086) TCGA-AD-6964-01 17 39620558 39620558 G A KRT32 Silent p.D282D 0.26 TCGA-AD-6964-01 17 39670463 39670463 A G KRT15 Intron 0.19 TCGA-AD-6964-01 17 39738751 39738751 A G KRT14 Missense_Mutation p.V452A 0.22 deleterious(0.02) possibly_damaging(0.63) TCGA-AD-6964-01 17 40001858 40001858 T C KLHL10 Missense_Mutation p.Y389H 0.17 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 17 40061799 40061799 T C ACLY Missense_Mutation p.M327V 0.19 deleterious(0.04) benign(0.019) TCGA-AD-6964-01 17 40815027 40815027 G A TUBG2 Missense_Mutation p.G146S 0.26 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 17 40849680 40849680 G A CNTNAP1 Missense_Mutation p.R1226Q 0.20 deleterious(0) possibly_damaging(0.821) TCGA-AD-6964-01 17 41570235 41570236 - C DHX8 Frame_Shift_Ins p.K233Qfs*16 0.23 TCGA-AD-6964-01 17 42169648 42169648 C T HDAC5 Silent p.S309S 0.10 TCGA-AD-6964-01 17 42287790 42287790 G A UBTF Missense_Mutation p.P471S 0.14 tolerated(0.7) benign(0.21) TCGA-AD-6964-01 17 42335471 42335471 G A SLC4A1 Missense_Mutation p.R389C 0.25 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 17 42739758 42739758 C T C17orf104 Missense_Mutation p.S93F 0.12 deleterious(0) probably_damaging(0.966) TCGA-AD-6964-01 17 42932291 42932291 C T EFTUD2 Nonsense_Mutation p.W709* 0.25 TCGA-AD-6964-01 17 42941103 42941103 C T EFTUD2 Missense_Mutation p.A445T 0.22 tolerated(0.14) benign(0.093) TCGA-AD-6964-01 17 43553022 43553022 G A PLEKHM1 Missense_Mutation p.R123W 0.25 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 17 46474066 46474066 C T SKAP1 Missense_Mutation p.R43Q 0.29 tolerated(0.06) possibly_damaging(0.476) TCGA-AD-6964-01 17 47241524 47241524 C A B4GALNT2 Silent p.R341R 0.17 TCGA-AD-6964-01 17 4800502 4800502 T - MINK1 Frame_Shift_Del p.F1308Lfs*15 0.16 TCGA-AD-6964-01 17 48141454 48141455 - C ITGA3 Frame_Shift_Ins p.R76Pfs*27 0.27 TCGA-AD-6964-01 17 48267715 48267715 G - COL1A1 Frame_Shift_Del p.G809Afs*299 0.38 TCGA-AD-6964-01 17 48445440 48445440 C T MRPL27 3'UTR 0.20 TCGA-AD-6964-01 17 48460412 48460412 C T LRRC59 Silent p.A287A 0.17 TCGA-AD-6964-01 17 48627925 48627925 T C SPATA20 Missense_Mutation p.V376A 0.28 deleterious(0.04) benign(0.17) TCGA-AD-6964-01 17 48677150 48677150 G A CACNA1G Missense_Mutation p.R1207H 0.13 tolerated(0.27) benign(0.001) TCGA-AD-6964-01 17 48696330 48696330 C T CACNA1G Silent p.H1914H 0.18 TCGA-AD-6964-01 17 49098616 49098616 G A SPAG9 Silent p.N298N 0.24 TCGA-AD-6964-01 17 55183816 55183816 T G AKAP1 Missense_Mutation p.L331V 0.20 tolerated(0.06) benign(0.011) TCGA-AD-6964-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.46 TCGA-AD-6964-01 17 56688668 56688668 C T TEX14 Silent p.V352V 0.21 TCGA-AD-6964-01 17 56811497 56811497 A G RAD51C Missense_Mutation p.T349A 0.24 tolerated(0.73) benign(0.001) TCGA-AD-6964-01 17 58275693 58275693 G A USP32 Missense_Mutation p.A1121V 0.25 tolerated(0.16) probably_damaging(0.989) TCGA-AD-6964-01 17 602598 602598 A G VPS53 Missense_Mutation p.V64A 0.13 tolerated(0.07) possibly_damaging(0.721) TCGA-AD-6964-01 17 61499220 61499220 C T TANC2 Silent p.Y1959Y 0.35 TCGA-AD-6964-01 17 61613392 61613392 C T KCNH6 Silent p.S488S 0.34 TCGA-AD-6964-01 17 61615469 61615469 C T KCNH6 Silent p.I515I 0.18 TCGA-AD-6964-01 17 61895738 61895739 AA - DDX42 Frame_Shift_Del p.R935Mfs*9 0.19 TCGA-AD-6964-01 17 61902751 61902751 G A FTSJ3 Missense_Mutation p.A149V 0.23 tolerated(0.33) benign(0.005) TCGA-AD-6964-01 17 62968724 62968724 C T AMZ2P1 RNA 0.05 TCGA-AD-6964-01 17 63223482 63223482 G T RGS9 Missense_Mutation p.R661L 0.11 tolerated_low_confidence(0.06) benign(0.003) TCGA-AD-6964-01 17 63533939 63533940 CT - AXIN2 Frame_Shift_Del p.E405Gfs*56 0.23 TCGA-AD-6964-01 17 63554554 63554554 A G AXIN2 Missense_Mutation p.L62S 0.19 deleterious(0) probably_damaging(0.939) TCGA-AD-6964-01 17 6358603 6358603 C T PITPNM3 3'UTR 0.24 TCGA-AD-6964-01 17 64023649 64023649 T G CEP112 Missense_Mutation p.K542N 0.10 deleterious(0) possibly_damaging(0.628) TCGA-AD-6964-01 17 65989239 65989239 G - C17orf58 Frame_Shift_Del p.D9Tfs*10 0.25 TCGA-AD-6964-01 17 66928602 66928603 - T ABCA8 Frame_Shift_Ins p.N208Kfs*16 0.19 TCGA-AD-6964-01 17 67189694 67189694 T - ABCA10 Frame_Shift_Del p.K527Nfs*2 0.18 TCGA-AD-6964-01 17 68130465 68130465 A G KCNJ16 3'UTR 0.14 TCGA-AD-6964-01 17 68172201 68172201 T A KCNJ2 Missense_Mutation p.Y341N 0.25 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 17 691203 691203 A G RNMTL1 Splice_Site p.X187_splice 0.09 TCGA-AD-6964-01 17 6913755 6913756 CT - ALOX12 3'UTR 0.10 TCGA-AD-6964-01 17 6945895 6945895 C T SLC16A11 Silent p.A202A 0.46 TCGA-AD-6964-01 17 7214927 7214927 G C EIF5A Missense_Mutation p.A175P 0.14 tolerated(0.13) possibly_damaging(0.56) TCGA-AD-6964-01 17 72436467 72436467 C T GPRC5C Silent p.G229G 0.22 TCGA-AD-6964-01 17 73016670 73016670 C T ICT1 Nonsense_Mutation p.Q152* 0.22 TCGA-AD-6964-01 17 73317862 73317862 C T GRB2 Missense_Mutation p.G116R 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 17 73494749 73494749 T - KIAA0195 Frame_Shift_Del p.L1258Rfs*7 0.16 TCGA-AD-6964-01 17 73662551 73662551 A - RECQL5 Frame_Shift_Del p.F29Lfs*13 0.23 TCGA-AD-6964-01 17 73723517 73723517 G A ITGB4 Silent p.A65A 0.14 TCGA-AD-6964-01 17 74068434 74068434 C T SRP68 Missense_Mutation p.G47R 0.23 tolerated(0.49) benign(0.201) TCGA-AD-6964-01 17 74151337 74151337 G A RNF157 Missense_Mutation p.A587V 0.26 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-AD-6964-01 17 74472927 74472927 C A RHBDF2 Missense_Mutation p.S396I 0.12 tolerated(0.1) benign(0.002) TCGA-AD-6964-01 17 74475265 74475265 C T RHBDF2 Missense_Mutation p.G152S 0.19 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 17 75398534 75398534 C T SEPT9 Missense_Mutation p.P157L 0.29 tolerated_low_confidence(0.13) benign(0.193) TCGA-AD-6964-01 17 76395408 76395408 G A PGS1 Intron 0.28 TCGA-AD-6964-01 17 76415786 76415786 G A PGS1 Intron 0.31 TCGA-AD-6964-01 17 76421525 76421525 T C DNAH17 Missense_Mutation p.D4371G 0.23 probably_damaging(0.996) TCGA-AD-6964-01 17 7671326 7671326 A G DNAH2 Missense_Mutation p.T1262A 0.30 benign(0.005) TCGA-AD-6964-01 17 76887060 76887060 A G DDC8 Missense_Mutation p.M509T 0.13 tolerated(0.45) benign(0.012) TCGA-AD-6964-01 17 76887859 76887859 G A DDC8 Missense_Mutation p.R243W 0.12 tolerated(0.1) benign(0.101) TCGA-AD-6964-01 17 77078114 77078114 A G ENGASE Missense_Mutation p.N336S 0.24 tolerated(0.28) benign(0.081) TCGA-AD-6964-01 17 7761573 7761573 C T CYB5D1 Missense_Mutation p.R41C 0.18 tolerated(0.06) benign(0.013) TCGA-AD-6964-01 17 78061474 78061474 C A CCDC40 Missense_Mutation p.L840M 0.22 tolerated(0.12) possibly_damaging(0.852) TCGA-AD-6964-01 17 78197106 78197106 T C SLC26A11 Silent p.A161A 0.15 TCGA-AD-6964-01 17 78264416 78264416 T C RNF213 Missense_Mutation p.I387T 0.24 benign(0.215) TCGA-AD-6964-01 17 78796989 78796989 C T RPTOR Missense_Mutation p.P368S 0.26 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 17 80014568 80014568 G A GPS1 Missense_Mutation p.A434T 0.23 tolerated(0.18) benign(0.003) TCGA-AD-6964-01 17 80678216 80678216 G A FN3KRP Missense_Mutation p.R121H 0.26 tolerated(0.54) possibly_damaging(0.532) TCGA-AD-6964-01 17 8092196 8092196 G A C17orf59 3'UTR 0.43 TCGA-AD-6964-01 17 81043050 81043050 G A METRNL Missense_Mutation p.G136D 0.20 tolerated(0.62) benign(0.022) TCGA-AD-6964-01 17 8168399 8168399 G A PFAS Missense_Mutation p.E746K 0.23 deleterious(0.01) probably_damaging(1) TCGA-AD-6964-01 17 8741908 8741908 G A PIK3R6 Silent p.V54V 0.17 TCGA-AD-6964-01 18 12429355 12429355 G A SLMO1 Missense_Mutation p.A158T 0.16 tolerated(0.06) benign(0.312) TCGA-AD-6964-01 18 14542679 14542679 T C POTEC Missense_Mutation p.D156G 0.19 deleterious(0.02) possibly_damaging(0.785) TCGA-AD-6964-01 18 18540139 18540139 T C ROCK1 Silent p.V1127V 0.27 TCGA-AD-6964-01 18 19065632 19065632 A T GREB1L Nonsense_Mutation p.K870* 0.12 TCGA-AD-6964-01 18 19996672 19996672 C A CTAGE1 Missense_Mutation p.R368M 0.23 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 18 21705442 21705442 T C TTC39C Missense_Mutation p.S450P 0.30 tolerated(0.11) benign(0.356) TCGA-AD-6964-01 18 23866239 23866239 G C TAF4B Missense_Mutation p.V456L 0.28 tolerated(0.18) benign(0.008) TCGA-AD-6964-01 18 28588040 28588040 C T DSC3 Silent p.R535R 0.10 TCGA-AD-6964-01 18 29693727 29693727 G A RNF138 Missense_Mutation p.R99K 0.23 tolerated(0.11) possibly_damaging(0.471) TCGA-AD-6964-01 18 29868113 29868113 A G GAREM Silent p.C149C 0.11 TCGA-AD-6964-01 18 32887561 32887562 - A ZNF271 RNA 0.10 TCGA-AD-6964-01 18 51729254 51729254 A G MBD2 Intron 0.09 TCGA-AD-6964-01 18 51796052 51796052 C T POLI Intron 0.40 TCGA-AD-6964-01 18 52946786 52946786 C T TCF4 Missense_Mutation p.M319I 0.24 tolerated(0.08) benign(0.269) TCGA-AD-6964-01 18 54591322 54591322 C T WDR7 Silent p.A1232A 0.32 TCGA-AD-6964-01 18 55247406 55247406 A G FECH Silent p.C31C 0.08 TCGA-AD-6964-01 18 60036673 60036673 G T TNFRSF11A Missense_Mutation p.G508V 0.21 deleterious(0.04) possibly_damaging(0.813) TCGA-AD-6964-01 18 60639886 60639887 - A PHLPP1 Frame_Shift_Ins p.T1236Nfs*38 0.21 TCGA-AD-6964-01 18 61587039 61587039 G A SERPINB10 Missense_Mutation p.M130I 0.15 tolerated(0.49) benign(0.002) TCGA-AD-6964-01 18 66377322 66377322 A G TMX3 Silent p.G67G 0.20 TCGA-AD-6964-01 18 67614723 67614723 A G CD226 Intron 0.14 TCGA-AD-6964-01 18 67997014 67997014 G T SOCS6 3'UTR 0.14 TCGA-AD-6964-01 18 7010223 7010223 C A LAMA1 Missense_Mutation p.Q1283H 0.22 tolerated(0.07) possibly_damaging(0.811) TCGA-AD-6964-01 18 77664115 77664115 G A PQLC1 Missense_Mutation p.A226V 0.29 tolerated(0.06) benign(0.25) TCGA-AD-6964-01 19 10291060 10291060 C T DNMT1 Silent p.T137T 0.16 TCGA-AD-6964-01 19 10439467 10439467 G T RAVER1 Missense_Mutation p.L220I 0.08 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 19 1046382 1046382 C A ABCA7 Silent p.P533P 0.29 TCGA-AD-6964-01 19 10789837 10789837 G A ILF3 Missense_Mutation p.R239H 0.09 deleterious(0.05) possibly_damaging(0.686) TCGA-AD-6964-01 19 10791973 10791973 C T ILF3 Missense_Mutation p.P383L 0.17 tolerated(0.24) probably_damaging(0.95) TCGA-AD-6964-01 19 10795267 10795267 G A ILF3 Intron 0.19 TCGA-AD-6964-01 19 11141427 11141427 G - SMARCA4 Frame_Shift_Del p.G1136Afs*4 0.21 TCGA-AD-6964-01 19 11144072 11144072 C T SMARCA4 Missense_Mutation p.A1218V 0.33 probably_damaging(0.995) TCGA-AD-6964-01 19 11145743 11145743 C A SMARCA4 Missense_Mutation p.R1369S 0.24 probably_damaging(0.998) TCGA-AD-6964-01 19 1119584 1119584 C T SBNO2 Missense_Mutation p.R435H 0.20 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 19 11594418 11594418 G A ZNF653 3'UTR 0.28 TCGA-AD-6964-01 19 1226542 1226542 C T STK11 Silent p.L400L 0.15 TCGA-AD-6964-01 19 12383990 12383990 A G ZNF44 Silent p.T408T 0.15 TCGA-AD-6964-01 19 12384166 12384166 T C ZNF44 Missense_Mutation p.I350V 0.13 tolerated(0.07) benign(0.217) TCGA-AD-6964-01 19 13255266 13255266 C A STX10 Silent p.V236V 0.13 TCGA-AD-6964-01 19 14199788 14199788 G A SAMD1 Missense_Mutation p.A311V 0.23 tolerated(0.34) possibly_damaging(0.584) TCGA-AD-6964-01 19 14523892 14523892 C T DDX39A Silent p.R47R 0.12 TCGA-AD-6964-01 19 14589193 14589193 C T GIPC1 3'UTR 0.38 TCGA-AD-6964-01 19 14854519 14854519 G A EMR2 Missense_Mutation p.P754L 0.40 deleterious(0) probably_damaging(0.993) TCGA-AD-6964-01 19 15219980 15219980 G A SYDE1 Missense_Mutation p.A68T 0.14 tolerated(0.1) benign(0.001) TCGA-AD-6964-01 19 15297738 15297738 G A NOTCH3 Silent p.C634C 0.21 TCGA-AD-6964-01 19 15793308 15793308 G A CYP4F12 Missense_Mutation p.S212N 0.13 deleterious(0.01) possibly_damaging(0.841) TCGA-AD-6964-01 19 16060647 16060647 C T OR10H4 Missense_Mutation p.A277V 0.10 deleterious(0) possibly_damaging(0.809) TCGA-AD-6964-01 19 17169425 17169425 G A HAUS8 Silent p.H193H 0.12 TCGA-AD-6964-01 19 17355849 17355849 C T NR2F6 Missense_Mutation p.D61N 0.12 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 19 17450321 17450321 G A GTPBP3 Missense_Mutation p.G328E 0.13 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 19 17768995 17768995 T A UNC13A Missense_Mutation p.T215S 0.07 tolerated_low_confidence(0.13) benign(0.004) TCGA-AD-6964-01 19 18368115 18368115 C T KIAA1683 Missense_Mutation p.A1327T 0.19 deleterious(0.04) probably_damaging(1) TCGA-AD-6964-01 19 19232568 19232568 G A TMEM161A Missense_Mutation p.A219V 0.28 tolerated(0.13) benign(0.013) TCGA-AD-6964-01 19 1924232 1924232 G A SCAMP4 Silent p.L213L 0.22 TCGA-AD-6964-01 19 19448007 19448007 T C MAU2 Missense_Mutation p.L130P 0.13 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 19 19741000 19741000 G A GMIP Silent p.C895C 0.41 TCGA-AD-6964-01 19 19760705 19760705 G A ATP13A1 Missense_Mutation p.P794S 0.16 tolerated(0.09) benign(0.34) TCGA-AD-6964-01 19 19822025 19822025 G A ZNF14 3'UTR 0.18 TCGA-AD-6964-01 19 20829165 20829165 T C ZNF626 Missense_Mutation p.E17G 0.07 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 19 2226246 2226246 G C DOT1L Missense_Mutation p.K1242N 0.16 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AD-6964-01 19 2269673 2269673 G A OAZ1 Missense_Mutation p.A26T 0.21 tolerated_low_confidence(0.41) benign(0.001) TCGA-AD-6964-01 19 2275646 2275646 G A C19orf35 3'UTR 0.16 TCGA-AD-6964-01 19 2290839 2290839 C T LINGO3 Missense_Mutation p.A313T 0.09 deleterious(0) probably_damaging(0.987) TCGA-AD-6964-01 19 2934030 2934030 G T ZNF77 Silent p.S365S 0.32 TCGA-AD-6964-01 19 2997833 2997833 G - TLE2 3'UTR 0.14 TCGA-AD-6964-01 19 3005449 3005449 C T TLE2 Missense_Mutation p.D628N 0.10 deleterious(0.03) benign(0.032) TCGA-AD-6964-01 19 31025818 31025818 C T ZNF536 Silent p.S745S 0.12 TCGA-AD-6964-01 19 32845487 32845487 G A ZNF507 Missense_Mutation p.S584N 0.16 deleterious(0) possibly_damaging(0.827) TCGA-AD-6964-01 19 33597788 33597788 G A GPATCH1 Missense_Mutation p.G423E 0.08 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 19 34263558 34263558 G A CHST8 Missense_Mutation p.A289T 0.14 tolerated(0.07) benign(0.42) TCGA-AD-6964-01 19 35230451 35230451 T C ZNF181 Missense_Mutation p.Y52H 0.08 tolerated(0.35) benign(0.003) TCGA-AD-6964-01 19 35434155 35434155 C T ZNF30 Silent p.G96G 0.09 TCGA-AD-6964-01 19 35435665 35435665 A - ZNF30 Frame_Shift_Del p.K601Nfs*16 0.19 TCGA-AD-6964-01 19 3590156 3590156 G A GIPC3 Missense_Mutation p.A303T 0.28 deleterious(0.01) benign(0.032) TCGA-AD-6964-01 19 36049521 36049521 G A ATP4A Silent p.R441R 0.13 TCGA-AD-6964-01 19 36218439 36218439 C T KMT2B Silent p.S1406S 0.27 TCGA-AD-6964-01 19 36590341 36590341 C T WDR62 Missense_Mutation p.A854V 0.40 tolerated(0.09) possibly_damaging(0.46) TCGA-AD-6964-01 19 37047041 37047041 G A ZNF529 Missense_Mutation p.P25S 0.13 tolerated(0.23) benign(0.039) TCGA-AD-6964-01 19 37314612 37314612 A G ZNF790 Silent p.Y30Y 0.14 TCGA-AD-6964-01 19 3784382 3784382 A G MATK Missense_Mutation p.L68P 0.20 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 19 38384841 38384841 A G WDR87 Missense_Mutation p.M462T 0.19 benign(0.068) TCGA-AD-6964-01 19 38573602 38573602 C A SIPA1L3 Missense_Mutation p.A466D 0.50 deleterious(0.01) benign(0.036) TCGA-AD-6964-01 19 39330959 39330960 GG - HNRNPL Frame_Shift_Del p.P337Tfs*56 0.23 TCGA-AD-6964-01 19 39591242 39591242 C T PAPL Missense_Mutation p.R218C 0.18 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 19 39666048 39666048 C T PAK4 Silent p.S443S 0.08 TCGA-AD-6964-01 19 39950569 39950569 G A SUPT5H Missense_Mutation p.R198H 0.16 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 19 40331395 40331395 G A FBL Nonsense_Mutation p.R15* 0.34 TCGA-AD-6964-01 19 40719501 40719501 C T MAP3K10 Missense_Mutation p.P639S 0.32 tolerated(0.07) benign(0.3) TCGA-AD-6964-01 19 40741046 40741046 T C AKT2 Silent p.P424P 0.14 TCGA-AD-6964-01 19 40890024 40890024 C T HIPK4 Missense_Mutation p.S163N 0.33 deleterious(0) probably_damaging(0.989) TCGA-AD-6964-01 19 41125283 41125283 A G LTBP4 Silent p.V1100V 0.19 TCGA-AD-6964-01 19 41128332 41128332 G A LTBP4 Missense_Mutation p.A1148T 0.22 tolerated(0.2) benign(0.017) TCGA-AD-6964-01 19 41239148 41239148 A G ITPKC Missense_Mutation p.D518G 0.10 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 19 4174726 4174726 G A SIRT6 Missense_Mutation p.P319L 0.12 deleterious(0) benign(0.002) TCGA-AD-6964-01 19 41810135 41810135 C - HNRNPUL1 Frame_Shift_Del p.T746Pfs*169 0.19 TCGA-AD-6964-01 19 42558519 42558519 C T GRIK5 Missense_Mutation p.A337T 0.24 tolerated(0.68) benign(0.119) TCGA-AD-6964-01 19 42794926 42794926 C T CIC Missense_Mutation p.A669V 0.09 possibly_damaging(0.584) TCGA-AD-6964-01 19 43268243 43268243 G A PSG8 Silent p.D85D 0.28 TCGA-AD-6964-01 19 4359976 4359976 G A MPND Missense_Mutation p.G465S 0.23 tolerated(1) benign(0.004) TCGA-AD-6964-01 19 44501530 44501531 - G ZNF155 Frame_Shift_Ins p.E520Gfs*7 0.24 TCGA-AD-6964-01 19 44791953 44791953 A G ZNF235 Silent p.C545C 0.33 TCGA-AD-6964-01 19 4498898 4498898 G A HDGFRP2 Missense_Mutation p.A521T 0.21 tolerated(0.17) possibly_damaging(0.682) TCGA-AD-6964-01 19 45260401 45260401 G A BCL3 Missense_Mutation p.R216H 0.41 tolerated(0.14) possibly_damaging(0.519) TCGA-AD-6964-01 19 45391602 45391602 A G PVRL2 Missense_Mutation p.K528R 0.07 deleterious(0.02) possibly_damaging(0.554) TCGA-AD-6964-01 19 4552597 4552597 G - SEMA6B Frame_Shift_Del p.R276Afs*11 0.28 TCGA-AD-6964-01 19 4653353 4653353 T C TNFAIP8L1 3'UTR 0.21 TCGA-AD-6964-01 19 46811997 46811997 G A HIF3A Missense_Mutation p.G176R 0.25 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 19 46997108 46997108 G A PNMAL2 Missense_Mutation p.R539C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-AD-6964-01 19 47217204 47217204 C T PRKD2 Missense_Mutation p.D99N 0.13 tolerated(0.15) probably_damaging(0.963) TCGA-AD-6964-01 19 474764 474764 C T ODF3L2 5'UTR 0.23 TCGA-AD-6964-01 19 47575671 47575671 G A ZC3H4 Silent p.I580I 0.20 TCGA-AD-6964-01 19 47856203 47856203 C T DHX34 5'UTR 0.21 TCGA-AD-6964-01 19 47910160 47910160 C T MEIS3 Missense_Mutation p.A401T 0.27 tolerated_low_confidence(0.55) benign(0.003) TCGA-AD-6964-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.26 TCGA-AD-6964-01 19 48183159 48183159 G A GLTSCR1 Silent p.A244A 0.50 TCGA-AD-6964-01 19 49116520 49116520 G A FAM83E Missense_Mutation p.A37V 0.24 tolerated(0.13) benign(0.094) TCGA-AD-6964-01 19 49132534 49132534 C - SPHK2 Frame_Shift_Del p.V492* 0.20 TCGA-AD-6964-01 19 49206871 49206871 C T FUT2 Missense_Mutation p.R220W 0.21 tolerated(0.05) benign(0.382) TCGA-AD-6964-01 19 49842611 49842611 T A CD37 Missense_Mutation p.W237R 0.17 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 19 50059648 50059648 G A NOSIP Silent p.L254L 0.31 TCGA-AD-6964-01 19 50102640 50102640 G A PRR12 Missense_Mutation p.E1264K 0.20 possibly_damaging(0.502) TCGA-AD-6964-01 19 50461665 50461665 G A SIGLEC11 Missense_Mutation p.S509L 0.21 deleterious(0) probably_damaging(0.983) TCGA-AD-6964-01 19 50862906 50862906 T C NAPSA Splice_Site p.X264_splice 0.20 TCGA-AD-6964-01 19 50912775 50912775 G T POLD1 Splice_Site p.X669_splice 0.24 TCGA-AD-6964-01 19 51767259 51767259 G A SIGLECL1 5'UTR 0.11 TCGA-AD-6964-01 19 51844503 51844503 C T VSIG10L Missense_Mutation p.A267T 0.31 tolerated(0.73) benign(0.002) TCGA-AD-6964-01 19 52033996 52033996 A G SIGLEC6 Silent p.C215C 0.09 TCGA-AD-6964-01 19 52133133 52133133 T C SIGLEC5 Missense_Mutation p.D125G 0.22 tolerated(0.43) benign(0.01) TCGA-AD-6964-01 19 52272066 52272066 G A FPR2 Missense_Mutation p.G52E 0.22 deleterious(0) probably_damaging(0.98) TCGA-AD-6964-01 19 52272072 52272072 G A FPR2 Missense_Mutation p.R54Q 0.34 tolerated(0.11) possibly_damaging(0.477) TCGA-AD-6964-01 19 52619959 52619959 T C ZNF616 Missense_Mutation p.K153R 0.09 tolerated(0.59) benign(0.009) TCGA-AD-6964-01 19 52919904 52919904 T C ZNF528 Missense_Mutation p.I600T 0.16 tolerated(1) benign(0.003) TCGA-AD-6964-01 19 53303071 53303071 G A ZNF28 Missense_Mutation p.A676V 0.10 deleterious(0) benign(0.091) TCGA-AD-6964-01 19 53884383 53884383 C T ZNF525 Missense_Mutation p.P184L 0.22 tolerated(0.24) probably_damaging(0.999) TCGA-AD-6964-01 19 54377386 54377386 G A MYADM Silent p.P201P 0.36 TCGA-AD-6964-01 19 54710477 54710477 C T RPS9 Intron 0.39 TCGA-AD-6964-01 19 54744293 54744293 T C LILRA6 Missense_Mutation p.Y372C 0.10 tolerated(0.13) benign(0.112) TCGA-AD-6964-01 19 54783401 54783401 A T LILRB2 Missense_Mutation p.F153I 0.07 deleterious(0) probably_damaging(0.969) TCGA-AD-6964-01 19 54927968 54927968 C T TTYH1 Intron 0.24 TCGA-AD-6964-01 19 55224683 55224683 G A LILRP2 RNA 0.15 TCGA-AD-6964-01 19 55525816 55525816 A C GP6 Silent p.G499G 0.21 TCGA-AD-6964-01 19 56090077 56090077 G A ZNF579 Missense_Mutation p.A310V 0.24 tolerated(0.1) probably_damaging(0.955) TCGA-AD-6964-01 19 56103966 56103966 G A FIZ1 Silent p.C447C 0.22 TCGA-AD-6964-01 19 56303726 56303726 G A NLRP11 Silent p.Y818Y 0.18 TCGA-AD-6964-01 19 5667386 5667386 C T SAFB Nonsense_Mutation p.R828* 0.21 TCGA-AD-6964-01 19 56935184 56935184 G A ZNF583 Missense_Mutation p.R386K 0.18 deleterious(0.03) possibly_damaging(0.835) TCGA-AD-6964-01 19 58002858 58002858 A G ZNF419 Missense_Mutation p.D32G 0.08 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 19 58059286 58059286 C - ZNF550 Frame_Shift_Del p.G68Efs*3 0.26 TCGA-AD-6964-01 19 58198372 58198372 T C ZNF551 Silent p.S243S 0.18 TCGA-AD-6964-01 19 58384237 58384237 A G ZNF814 Missense_Mutation p.S841P 0.08 tolerated(0.11) possibly_damaging(0.582) TCGA-AD-6964-01 19 58640854 58640854 G A ZNF329 Missense_Mutation p.T6M 0.27 tolerated(0.08) benign(0.093) TCGA-AD-6964-01 19 6897312 6897312 A G EMR1 Missense_Mutation p.T131A 0.08 tolerated(0.22) benign(0.039) TCGA-AD-6964-01 19 7964644 7964644 C T LRRC8E Missense_Mutation p.R413C 0.34 deleterious(0) possibly_damaging(0.53) TCGA-AD-6964-01 19 7998810 7998810 G A TIMM44 Missense_Mutation p.R208W 0.27 deleterious(0) probably_damaging(0.945) TCGA-AD-6964-01 19 808413 808413 G A PTBP1 Missense_Mutation p.A403T 0.15 deleterious(0) possibly_damaging(0.652) TCGA-AD-6964-01 19 8171044 8171044 C T FBN3 Silent p.Q1587Q 0.28 TCGA-AD-6964-01 19 8969276 8969276 C T MUC16 Silent p.A14356A 0.23 TCGA-AD-6964-01 19 9020825 9020825 G T MUC16 Missense_Mutation p.P12426H 0.15 benign(0.137) TCGA-AD-6964-01 19 9065842 9065842 C T MUC16 Missense_Mutation p.D7202N 0.23 unknown(0) TCGA-AD-6964-01 19 9225981 9225981 A C OR7G1 Silent p.T153T 0.08 TCGA-AD-6964-01 1 100152269 100152269 C T PALMD Silent p.L97L 0.08 TCGA-AD-6964-01 1 100614491 100614491 C T LRRC39 3'UTR 0.22 TCGA-AD-6964-01 1 100740462 100740462 C A RTCA Missense_Mutation p.R199S 0.20 tolerated(0.07) benign(0.23) TCGA-AD-6964-01 1 102269719 102269719 A - OLFM3 3'UTR 0.16 TCGA-AD-6964-01 1 10399838 10399838 G A KIF1B Missense_Mutation p.R1099H 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-AD-6964-01 1 10412707 10412707 C A KIF1B Missense_Mutation p.P1277H 0.16 deleterious(0) benign(0.405) TCGA-AD-6964-01 1 10479486 10479486 C T PGD Missense_Mutation p.R408W 0.27 deleterious(0) possibly_damaging(0.87) TCGA-AD-6964-01 1 10699877 10699877 A G CASZ1 Missense_Mutation p.F1468L 0.24 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 1 110884025 110884025 C A RBM15 Missense_Mutation p.H666Q 0.13 tolerated(0.33) benign(0.191) TCGA-AD-6964-01 1 111061748 111061748 T C KCNA10 5'UTR 0.21 TCGA-AD-6964-01 1 112270130 112270130 G T FAM212B Silent p.P118P 0.29 TCGA-AD-6964-01 1 112997073 112997073 G A CTTNBP2NL Silent p.V111V 0.23 TCGA-AD-6964-01 1 113235435 113235435 C T MOV10 Silent p.L342L 0.23 TCGA-AD-6964-01 1 11345827 11345827 T C UBIAD1 Missense_Mutation p.I219T 0.29 deleterious(0) possibly_damaging(0.472) TCGA-AD-6964-01 1 114484009 114484009 T C HIPK1 Missense_Mutation p.V335A 0.24 deleterious(0) probably_damaging(0.952) TCGA-AD-6964-01 1 114963073 114963073 C T TRIM33 Intron 0.16 TCGA-AD-6964-01 1 1169837 1169837 C T B3GALT6 3'UTR 0.21 TCGA-AD-6964-01 1 11854048 11854048 G T MTHFR Silent p.I482I 0.16 TCGA-AD-6964-01 1 11982665 11982665 G A KIAA2013 Intron 0.17 TCGA-AD-6964-01 1 120054138 120054138 A C HSD3B1 Missense_Mutation p.K53T 0.23 deleterious(0.02) benign(0.367) TCGA-AD-6964-01 1 12164562 12164562 C T TNFRSF8 Missense_Mutation p.P132L 0.21 deleterious(0.03) possibly_damaging(0.531) TCGA-AD-6964-01 1 1235556 1235558 CTT - ACAP3 In_Frame_Del p.K183del 0.27 TCGA-AD-6964-01 1 1274813 1274813 G A DVL1 Missense_Mutation p.P354L 0.20 deleterious(0) probably_damaging(0.96) TCGA-AD-6964-01 1 1288815 1288815 C - MXRA8 3'UTR 0.10 TCGA-AD-6964-01 1 1288894 1288894 G T MXRA8 3'UTR 0.16 TCGA-AD-6964-01 1 145539728 145539728 C T ITGA10 Nonsense_Mutation p.Q1054* 0.14 TCGA-AD-6964-01 1 146631209 146631209 C A PRKAB2 Missense_Mutation p.V252F 0.22 deleterious(0) possibly_damaging(0.857) TCGA-AD-6964-01 1 147092566 147092566 C T BCL9 Missense_Mutation p.H869Y 0.23 deleterious(0.05) benign(0.013) TCGA-AD-6964-01 1 147126385 147126385 A G ACP6 Missense_Mutation p.V235A 0.31 deleterious(0) benign(0.42) TCGA-AD-6964-01 1 147400562 147400562 G A GPR89B 5'UTR 0.38 TCGA-AD-6964-01 1 149783733 149783733 A G HIST2H2BF Missense_Mutation p.V49A 0.27 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AD-6964-01 1 150445477 150445477 C - RPRD2 Frame_Shift_Del p.T1353Pfs*60 0.11 TCGA-AD-6964-01 1 150445586 150445586 G - RPRD2 Frame_Shift_Del p.G1389Efs*24 0.32 TCGA-AD-6964-01 1 150938657 150938657 G - CERS2 Frame_Shift_Del p.I371Sfs*63 0.22 TCGA-AD-6964-01 1 151315454 151315454 G - RFX5 Frame_Shift_Del p.R354Gfs*7 0.23 TCGA-AD-6964-01 1 151337076 151337076 G A SELENBP1 Silent p.A454A 0.17 TCGA-AD-6964-01 1 151518331 151518331 T C TUFT1 Intron 0.11 TCGA-AD-6964-01 1 151665504 151665504 T A SNX27 Missense_Mutation p.F503I 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-AD-6964-01 1 151732618 151732618 C T MRPL9 Missense_Mutation p.V238M 0.15 tolerated(0.08) probably_damaging(0.96) TCGA-AD-6964-01 1 151732620 151732620 A G MRPL9 Missense_Mutation p.V237A 0.15 tolerated(0.06) possibly_damaging(0.456) TCGA-AD-6964-01 1 152185747 152185747 G A HRNR Silent p.G2786G 0.24 TCGA-AD-6964-01 1 152279739 152279739 G A FLG Silent p.A2541A 0.10 TCGA-AD-6964-01 1 153277515 153277515 A T PGLYRP3 Missense_Mutation p.V95E 0.07 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 1 153747817 153747817 G - SLC27A3 5'UTR 0.24 TCGA-AD-6964-01 1 153789947 153789947 T C GATAD2B Silent p.A267A 0.11 TCGA-AD-6964-01 1 154185009 154185009 C T C1orf43 Silent p.T144T 0.23 TCGA-AD-6964-01 1 155150502 155150502 G T TRIM46 Nonsense_Mutation p.E312* 0.24 TCGA-AD-6964-01 1 155234021 155234021 C T CLK2 Missense_Mutation p.R405Q 0.17 tolerated(0.52) possibly_damaging(0.833) TCGA-AD-6964-01 1 155265030 155265030 A T PKLR Missense_Mutation p.F191I 0.36 deleterious(0.01) benign(0.093) TCGA-AD-6964-01 1 155837956 155837956 C T SYT11 Missense_Mutation p.R79W 0.12 deleterious(0.02) possibly_damaging(0.719) TCGA-AD-6964-01 1 156374151 156374151 G A C1orf61 3'UTR 0.23 TCGA-AD-6964-01 1 156396608 156396608 C T C1orf61 5'UTR 0.25 TCGA-AD-6964-01 1 156507089 156507089 C T IQGAP3 Silent p.P1102P 0.29 TCGA-AD-6964-01 1 156521805 156521805 C T IQGAP3 Missense_Mutation p.V511M 0.08 deleterious(0) possibly_damaging(0.677) TCGA-AD-6964-01 1 156901785 156901785 T C LRRC71 Silent p.P469P 0.19 TCGA-AD-6964-01 1 157736746 157736746 C T FCRL2 Missense_Mutation p.R393K 0.08 tolerated(0.21) benign(0.04) TCGA-AD-6964-01 1 157738451 157738451 G C FCRL2 Silent p.P212P 0.36 TCGA-AD-6964-01 1 158064555 158064555 G A KIRREL Missense_Mutation p.R640H 0.19 deleterious(0.02) possibly_damaging(0.73) TCGA-AD-6964-01 1 158323604 158323604 G A CD1E 5'UTR 0.29 TCGA-AD-6964-01 1 158747342 158747342 A - OR6N2 Frame_Shift_Del p.F28Lfs*107 0.16 TCGA-AD-6964-01 1 160098835 160098835 C T ATP1A2 Missense_Mutation p.R428C 0.20 deleterious(0) probably_damaging(0.979) TCGA-AD-6964-01 1 16101363 16101363 G T FBLIM1 Missense_Mutation p.S321I 0.19 deleterious(0.01) possibly_damaging(0.607) TCGA-AD-6964-01 1 161089692 161089692 A G NIT1 Missense_Mutation p.T181A 0.21 deleterious(0.05) benign(0.444) TCGA-AD-6964-01 1 161519601 161519601 A G FCGR3A Missense_Mutation p.S12P 0.29 tolerated_low_confidence(0.2) possibly_damaging(0.855) TCGA-AD-6964-01 1 161789455 161789455 A - ATF6 Frame_Shift_Del p.N316Ifs*17 0.19 TCGA-AD-6964-01 1 161969959 161969959 C T OLFML2B Missense_Mutation p.G298D 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-AD-6964-01 1 163043365 163043365 G A RGS4 Missense_Mutation p.A208T 0.12 deleterious(0) probably_damaging(0.987) TCGA-AD-6964-01 1 1635425 1635425 C T CDK11A Intron 0.22 TCGA-AD-6964-01 1 167088574 167088574 C T DUSP27 Missense_Mutation p.P176S 0.11 tolerated(0.06) benign(0.159) TCGA-AD-6964-01 1 16802336 16802336 T C CROCCP3 RNA 0.17 TCGA-AD-6964-01 1 168054644 168054644 G T GPR161 3'UTR 0.35 TCGA-AD-6964-01 1 168059836 168059836 C T GPR161 Silent p.T410T 0.27 TCGA-AD-6964-01 1 1686082 1686082 G A NADK Silent p.L393L 0.19 TCGA-AD-6964-01 1 169806089 169806090 - C C1orf112 Frame_Shift_Ins p.E524Rfs*19 0.26 TCGA-AD-6964-01 1 173593952 173593952 G T ANKRD45 Missense_Mutation p.P235H 0.21 deleterious(0) probably_damaging(0.959) TCGA-AD-6964-01 1 173628487 173628487 T C ANKRD45 Missense_Mutation p.E24G 0.24 tolerated(0.1) unknown(0) TCGA-AD-6964-01 1 17395685 17395685 C T PADI2 Missense_Mutation p.V618M 0.29 tolerated(0.14) benign(0.021) TCGA-AD-6964-01 1 174188379 174188379 T C RABGAP1L Silent p.V28V 0.20 TCGA-AD-6964-01 1 174606567 174606567 C T RABGAP1L Missense_Mutation p.H589Y 0.21 deleterious(0) probably_damaging(0.993) TCGA-AD-6964-01 1 174977765 174977765 T C CACYBP Silent p.L151L 0.23 TCGA-AD-6964-01 1 179599978 179599978 A T TDRD5 Missense_Mutation p.D350V 0.08 deleterious(0) probably_damaging(0.966) TCGA-AD-6964-01 1 181701737 181701737 G A CACNA1E Missense_Mutation p.G839S 0.22 tolerated(0.26) possibly_damaging(0.855) TCGA-AD-6964-01 1 182856586 182856586 T C DHX9 3'UTR 0.08 TCGA-AD-6964-01 1 183510135 183510135 A G SMG7 Missense_Mutation p.K438E 0.21 deleterious(0.01) possibly_damaging(0.757) TCGA-AD-6964-01 1 183510188 183510188 A G SMG7 Silent p.R455R 0.22 TCGA-AD-6964-01 1 184021000 184021000 C T TSEN15 Silent p.D37D 0.38 TCGA-AD-6964-01 1 185113050 185113051 - T TRMT1L Frame_Shift_Ins p.M256Nfs*17 0.11 TCGA-AD-6964-01 1 186279000 186279000 G A PRG4 Missense_Mutation p.R1166Q 0.24 unknown(0) TCGA-AD-6964-01 1 186306175 186306175 T A TPR Silent p.S1492S 0.23 TCGA-AD-6964-01 1 19203999 19203999 C T ALDH4A1 Missense_Mutation p.A350T 0.20 deleterious(0) possibly_damaging(0.901) TCGA-AD-6964-01 1 192780685 192780685 T A RGS2 Missense_Mutation p.C199S 0.10 deleterious(0) probably_damaging(0.984) TCGA-AD-6964-01 1 193046159 193046159 T A TROVE2 Silent p.A355A 0.10 TCGA-AD-6964-01 1 19433178 19433178 C T UBR4 Missense_Mutation p.R4093H 0.12 benign(0) TCGA-AD-6964-01 1 19488988 19488988 G A UBR4 Missense_Mutation p.R1628W 0.31 possibly_damaging(0.702) TCGA-AD-6964-01 1 196621242 196621243 - A CFH 5'UTR p.M1? 0.13 TCGA-AD-6964-01 1 196695653 196695654 - A CFH Frame_Shift_Ins p.T645Nfs*9 0.20 TCGA-AD-6964-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.18 TCGA-AD-6964-01 1 201056981 201056981 A T CACNA1S Missense_Mutation p.L326H 0.16 deleterious(0) probably_damaging(0.95) TCGA-AD-6964-01 1 201334404 201334404 A G TNNT2 Missense_Mutation p.L99P 0.28 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 1 201969108 201969108 A C RNPEP Missense_Mutation p.N390T 0.26 tolerated(0.06) benign(0.328) TCGA-AD-6964-01 1 202880233 202880233 C T KLHL12 Silent p.V222V 0.11 TCGA-AD-6964-01 1 202917523 202917523 A G ADIPOR1 Missense_Mutation p.V56A 0.20 tolerated(0.89) benign(0) TCGA-AD-6964-01 1 203054675 203054675 G T MYOG Missense_Mutation p.L139I 0.18 deleterious(0.01) possibly_damaging(0.899) TCGA-AD-6964-01 1 203194944 203194944 C A CHIT1 Missense_Mutation p.G37V 0.21 deleterious(0) probably_damaging(0.994) TCGA-AD-6964-01 1 204120809 204120809 C T ETNK2 Missense_Mutation p.V58M 0.35 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 1 205277783 205277783 G A NUAK2 Missense_Mutation p.R144W 0.24 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 1 205779318 205779318 G A SLC41A1 Silent p.G84G 0.12 TCGA-AD-6964-01 1 206225275 206225275 A T AVPR1B Missense_Mutation p.T279S 0.22 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 1 207317316 207317316 C A C4BPA Missense_Mutation p.P533Q 0.29 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 1 2075933 2075933 G A PRKCZ Intron 0.39 TCGA-AD-6964-01 1 207758197 207758197 C T CR1 Missense_Mutation p.R1836C 0.09 deleterious(0) probably_damaging(0.989) TCGA-AD-6964-01 1 207782683 207782683 G A CR1 Missense_Mutation p.S1982N 0.35 deleterious(0.01) possibly_damaging(0.815) TCGA-AD-6964-01 1 209801426 209801426 C T LAMB3 Silent p.K414K 0.39 TCGA-AD-6964-01 1 21011347 21011347 G A KIF17 Missense_Mutation p.T729I 0.11 deleterious(0) benign(0.221) TCGA-AD-6964-01 1 210796927 210796927 T C HHAT Missense_Mutation p.S436P 0.10 tolerated(0.14) probably_damaging(0.921) TCGA-AD-6964-01 1 210857248 210857248 A G KCNH1 Missense_Mutation p.L782P 0.16 tolerated(0.18) benign(0.048) TCGA-AD-6964-01 1 211654526 211654526 G A RD3 Missense_Mutation p.R78W 0.22 deleterious(0) benign(0.003) TCGA-AD-6964-01 1 215753258 215753258 C T KCTD3 Missense_Mutation p.P181L 0.20 tolerated(0.11) benign(0.104) TCGA-AD-6964-01 1 216498728 216498728 C T USH2A Nonsense_Mutation p.W354* 0.19 TCGA-AD-6964-01 1 218614769 218614769 C T TGFB2 3'UTR 0.29 TCGA-AD-6964-01 1 225340565 225340565 C T DNAH14 Missense_Mutation p.R806C 0.14 tolerated(0.06) benign(0) TCGA-AD-6964-01 1 225699533 225699533 G A ENAH Missense_Mutation p.A484V 0.19 tolerated(0.17) benign(0.05) TCGA-AD-6964-01 1 226549777 226549777 G A PARP1 Silent p.G952G 0.19 TCGA-AD-6964-01 1 22816384 22816384 C T ZBTB40 5'UTR 0.21 TCGA-AD-6964-01 1 228295518 228295518 G A MRPL55 Missense_Mutation p.H63Y 0.41 tolerated(0.06) benign(0.251) TCGA-AD-6964-01 1 228503665 228503665 A T OBSCN Missense_Mutation p.D5334V 0.28 probably_damaging(0.996) TCGA-AD-6964-01 1 22927419 22927419 G A EPHA8 Missense_Mutation p.R856H 0.20 deleterious(0) probably_damaging(0.971) TCGA-AD-6964-01 1 229568838 229568838 C T ACTA1 Missense_Mutation p.A9T 0.29 tolerated_low_confidence(0.06) benign(0.009) TCGA-AD-6964-01 1 229653803 229653804 - A ABCB10 3'UTR 0.30 TCGA-AD-6964-01 1 229772136 229772136 C G URB2 Silent p.G592G 0.09 TCGA-AD-6964-01 1 230493041 230493041 C T PGBD5 Missense_Mutation p.A51T 0.41 tolerated(0.15) benign(0.116) TCGA-AD-6964-01 1 231487256 231487256 A - SPRTN Frame_Shift_Del p.G222Afs*7 0.23 TCGA-AD-6964-01 1 23237007 23237007 A G EPHB2 Missense_Mutation p.T880A 0.23 tolerated(0.93) benign(0.026) TCGA-AD-6964-01 1 232575211 232575211 C T SIPA1L2 Missense_Mutation p.S1225N 0.28 tolerated(0.08) possibly_damaging(0.455) TCGA-AD-6964-01 1 233515325 233515325 A G MLK4 Missense_Mutation p.D858G 0.10 tolerated(0.28) benign(0.001) TCGA-AD-6964-01 1 233807125 233807125 A G KCNK1 Missense_Mutation p.D287G 0.15 tolerated(0.06) benign(0) TCGA-AD-6964-01 1 235969113 235969113 G A LYST Missense_Mutation p.A1108V 0.22 deleterious(0) possibly_damaging(0.583) TCGA-AD-6964-01 1 236016357 236016357 C T LYST Intron 0.24 TCGA-AD-6964-01 1 236748486 236748486 C T HEATR1 Missense_Mutation p.E694K 0.12 deleterious(0.04) benign(0.066) TCGA-AD-6964-01 1 236758872 236758873 - G HEATR1 Frame_Shift_Ins p.H353Pfs*16 0.23 TCGA-AD-6964-01 1 236925902 236925902 G A ACTN2 Missense_Mutation p.G890R 0.22 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 1 23697801 23697801 G - C1orf213 3'UTR 0.21 TCGA-AD-6964-01 1 237972262 237972262 A T RYR2 Missense_Mutation p.N4787I 0.08 probably_damaging(0.973) TCGA-AD-6964-01 1 240256810 240256810 G C FMN2 Missense_Mutation p.K467N 0.17 unknown(0) TCGA-AD-6964-01 1 241714307 241714308 - A KMO Frame_Shift_Ins p.S95Vfs*29 0.10 TCGA-AD-6964-01 1 241798341 241798341 A G CHML Missense_Mutation p.L243S 0.12 tolerated(1) benign(0.004) TCGA-AD-6964-01 1 244217563 244217563 G A ZBTB18 Missense_Mutation p.D163N 0.16 tolerated(0.48) possibly_damaging(0.455) TCGA-AD-6964-01 1 244541908 244541908 C T C1orf100 Nonsense_Mutation p.R98* 0.19 TCGA-AD-6964-01 1 246498777 246498777 C T SMYD3 Splice_Site p.X77_splice 0.28 TCGA-AD-6964-01 1 246939881 246939881 G A RP11-439E19.10 3'Flank 0.21 TCGA-AD-6964-01 1 24790604 24790604 A G NIPAL3 Missense_Mutation p.M339V 0.13 tolerated(0.29) benign(0.012) TCGA-AD-6964-01 1 247921159 247921159 G A OR1C1 Missense_Mutation p.L184F 0.14 deleterious(0) probably_damaging(0.938) TCGA-AD-6964-01 1 248402247 248402247 A T OR2M4 Missense_Mutation p.Q6L 0.08 tolerated(0.09) benign(0.013) TCGA-AD-6964-01 1 24995923 24995923 G A SRRM1 Silent p.S683S 0.09 TCGA-AD-6964-01 1 25228798 25228798 G A RUNX3 Missense_Mutation p.R369C 0.14 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 1 26356198 26356198 G T EXTL1 Missense_Mutation p.Q327H 0.23 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 1 27056064 27056065 - C ARID1A Intron 0.17 TCGA-AD-6964-01 1 27223922 27223922 T C GPATCH3 Missense_Mutation p.E249G 0.13 tolerated(0.05) benign(0.016) TCGA-AD-6964-01 1 27226719 27226719 G A GPATCH3 Missense_Mutation p.A72V 0.09 tolerated(0.19) benign(0.003) TCGA-AD-6964-01 1 27705910 27705910 C - CD164L2 3'UTR 0.28 TCGA-AD-6964-01 1 27875212 27875212 G A AHDC1 Missense_Mutation p.P1139S 0.18 tolerated(0.33) possibly_damaging(0.803) TCGA-AD-6964-01 1 27995047 27995047 C A IFI6 Splice_Site p.X32_splice 0.27 TCGA-AD-6964-01 1 32100991 32100991 C T PEF1 Missense_Mutation p.G53R 0.24 deleterious(0.04) unknown(0) TCGA-AD-6964-01 1 32149746 32149746 C T COL16A1 Silent p.E749E 0.17 TCGA-AD-6964-01 1 32694367 32694367 C T EIF3I Missense_Mutation p.R227W 0.26 deleterious(0.01) possibly_damaging(0.792) TCGA-AD-6964-01 1 3347499 3347499 G T PRDM16 Missense_Mutation p.E1116D 0.07 tolerated(0.63) benign(0.001) TCGA-AD-6964-01 1 34101972 34101972 G C CSMD2 Missense_Mutation p.P1613A 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-AD-6964-01 1 3411049 3411049 G A MEGF6 Missense_Mutation p.R1339C 0.11 tolerated(0.11) possibly_damaging(0.776) TCGA-AD-6964-01 1 34238333 34238333 G A CSMD2 Silent p.C521C 0.13 TCGA-AD-6964-01 1 34276370 34276370 T A CSMD2 Missense_Mutation p.I434F 0.08 deleterious(0) possibly_damaging(0.694) TCGA-AD-6964-01 1 3431148 3431148 G T MEGF6 Silent p.G273G 0.27 TCGA-AD-6964-01 1 35852756 35852756 A G ZMYM4 Silent p.A663A 0.10 TCGA-AD-6964-01 1 36229901 36229901 A T CLSPN Missense_Mutation p.I183N 0.07 deleterious(0.01) possibly_damaging(0.8) TCGA-AD-6964-01 1 36636626 36636626 C - MAP7D1 Frame_Shift_Del p.P36Hfs*20 0.27 TCGA-AD-6964-01 1 37949076 37949076 G T ZC3H12A Missense_Mutation p.S555I 0.11 tolerated(0.18) benign(0.014) TCGA-AD-6964-01 1 38166168 38166168 A G CDCA8 Missense_Mutation p.E133G 0.13 tolerated(0.32) benign(0.01) TCGA-AD-6964-01 1 38220020 38220020 C A EPHA10 Missense_Mutation p.K291N 0.13 deleterious(0.01) benign(0.344) TCGA-AD-6964-01 1 38327971 38327973 AGG - INPP5B 3'UTR 0.31 TCGA-AD-6964-01 1 40124965 40124965 G A NT5C1A Missense_Mutation p.A312V 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-AD-6964-01 1 41493970 41493970 G A SCMH1 Silent p.L627L 0.11 TCGA-AD-6964-01 1 43815006 43815006 G T MPL Missense_Mutation p.R514M 0.24 deleterious(0) benign(0.443) TCGA-AD-6964-01 1 43851662 43851662 C A MED8 Missense_Mutation p.Q243H 0.22 tolerated(0.08) benign(0.003) TCGA-AD-6964-01 1 43908662 43908662 G A SZT2 Missense_Mutation p.R2718H 0.14 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 1 44085063 44085063 G A PTPRF Missense_Mutation p.R1584Q 0.22 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 1 45243428 45243428 G A RPS8 Silent p.A118A 0.23 TCGA-AD-6964-01 1 45484702 45484702 A G ZSWIM5 Silent p.G994G 0.24 TCGA-AD-6964-01 1 45797957 45797957 G T MUTYH Missense_Mutation p.P269T 0.10 deleterious(0.03) probably_damaging(0.933) TCGA-AD-6964-01 1 45798094 45798094 G A MUTYH Missense_Mutation p.P250S 0.11 tolerated(0.56) benign(0.003) TCGA-AD-6964-01 1 46972718 46972718 C T DMBX1 Silent p.H12H 0.28 TCGA-AD-6964-01 1 47685538 47685538 C T TAL1 Missense_Mutation p.V284M 0.31 tolerated(0.73) benign(0.026) TCGA-AD-6964-01 1 47906015 47906015 C T FOXD2 3'UTR 0.18 TCGA-AD-6964-01 1 49711505 49711505 T C AGBL4 Missense_Mutation p.K105R 0.14 tolerated(0.06) probably_damaging(0.992) TCGA-AD-6964-01 1 52252287 52252287 C T OSBPL9 Silent p.R676R 0.09 TCGA-AD-6964-01 1 52803516 52803516 T A ZFYVE9 Missense_Mutation p.F1248Y 0.08 tolerated(0.12) possibly_damaging(0.842) TCGA-AD-6964-01 1 52854887 52854887 A G ORC1 Splice_Site p.X396_splice 0.16 TCGA-AD-6964-01 1 54870294 54870294 T - SSBP3 Frame_Shift_Del p.N49Tfs*95 0.23 TCGA-AD-6964-01 1 55148361 55148361 T C MROH7 Missense_Mutation p.L805P 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-AD-6964-01 1 55564161 55564161 T C USP24 Missense_Mutation p.D1814G 0.08 tolerated(0.2) benign(0.34) TCGA-AD-6964-01 1 58946773 58946773 C T OMA1 Missense_Mutation p.S480N 0.11 tolerated(0.68) benign(0.002) TCGA-AD-6964-01 1 59041945 59041945 A G TACSTD2 Missense_Mutation p.L295P 0.13 deleterious(0) probably_damaging(0.959) TCGA-AD-6964-01 1 60505678 60505678 G A C1orf87 Missense_Mutation p.R220C 0.24 tolerated(0.11) benign(0) TCGA-AD-6964-01 1 6184675 6184675 C T CHD5 Missense_Mutation p.D1481N 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-AD-6964-01 1 62914240 62914240 T C USP1 Missense_Mutation p.C509R 0.09 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 1 65301171 65301171 C A JAK1 Missense_Mutation p.G1093C 0.22 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 1 66379009 66379009 C T PDE4B Silent p.S4S 0.18 TCGA-AD-6964-01 1 70832204 70832204 C T HHLA3 Nonsense_Mutation p.R80* 0.18 TCGA-AD-6964-01 1 74835261 74835261 G A FPGT-TNNI3K Silent p.E667E 0.18 TCGA-AD-6964-01 1 75037783 75037783 A G C1orf173 Missense_Mutation p.L1204P 0.25 tolerated(0.28) benign(0) TCGA-AD-6964-01 1 75199055 75199055 T - TYW3 Frame_Shift_Del p.F44Sfs*17 0.27 TCGA-AD-6964-01 1 76255665 76255665 T C RABGGTB Missense_Mutation p.V113A 0.10 tolerated(0.7) benign(0) TCGA-AD-6964-01 1 77620074 77620074 A - PIGK Intron 0.20 TCGA-AD-6964-01 1 8419854 8419854 T C RERE Silent p.R1196R 0.35 TCGA-AD-6964-01 1 84963325 84963325 T C RPF1 3'UTR 0.09 TCGA-AD-6964-01 1 85787101 85787101 C T DDAH1 3'UTR 0.28 TCGA-AD-6964-01 1 861366 861366 C T SAMD11 Silent p.C15C 0.12 TCGA-AD-6964-01 1 86173534 86173534 T C ZNHIT6 Missense_Mutation p.E145G 0.06 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-AD-6964-01 1 91967256 91967256 C T CDC7 5'UTR 0.19 TCGA-AD-6964-01 1 92647039 92647039 G T KIAA1107 Nonsense_Mutation p.E829* 0.25 TCGA-AD-6964-01 1 94012990 94012990 A T FNBP1L Silent p.G498G 0.14 TCGA-AD-6964-01 1 94645330 94645330 G A ARHGAP29 Missense_Mutation p.P811S 0.19 deleterious(0.02) probably_damaging(1) TCGA-AD-6964-01 1 94645426 94645426 T A ARHGAP29 Missense_Mutation p.T779S 0.19 tolerated(0.68) benign(0.016) TCGA-AD-6964-01 1 97217035 97217035 A T PTBP2 Missense_Mutation p.M32L 0.22 tolerated(0.84) benign(0.001) TCGA-AD-6964-01 1 98186336 98186336 A G DPYD Intron 0.10 TCGA-AD-6964-01 20 13765812 13765812 T A NDUFAF5 Missense_Mutation p.V33D 0.21 tolerated(0.25) benign(0.032) TCGA-AD-6964-01 20 1552533 1552533 G A SIRPB1 Missense_Mutation p.T195I 0.09 tolerated(0.07) possibly_damaging(0.864) TCGA-AD-6964-01 20 18505199 18505199 G A SEC23B Silent p.L163L 0.22 TCGA-AD-6964-01 20 20168615 20168615 G A C20orf26 Missense_Mutation p.G476D 0.17 deleterious(0.03) benign(0.082) TCGA-AD-6964-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.30 TCGA-AD-6964-01 20 23357866 23357866 A G NAPB 3'UTR 0.26 TCGA-AD-6964-01 20 23420871 23420871 T A CSTL1 5'UTR 0.10 TCGA-AD-6964-01 20 2634022 2634022 C T NOP56 Missense_Mutation p.A64V 0.17 tolerated(1) benign(0.002) TCGA-AD-6964-01 20 2637825 2637825 G A NOP56 Silent p.A460A 0.10 TCGA-AD-6964-01 20 2845831 2845831 G A VPS16 Missense_Mutation p.R681Q 0.33 tolerated(0.15) benign(0.107) TCGA-AD-6964-01 20 3001963 3001963 C T PTPRA Silent p.C350C 0.28 TCGA-AD-6964-01 20 30388807 30388807 G A TPX2 Missense_Mutation p.G723D 0.18 tolerated(0.53) benign(0.075) TCGA-AD-6964-01 20 30619057 30619057 C G CCM2L 3'UTR 0.12 TCGA-AD-6964-01 20 31023045 31023046 - C ASXL1 Frame_Shift_Ins p.S846Qfs*5 0.22 TCGA-AD-6964-01 20 3145319 3145319 C T LZTS3 Silent p.E601E 0.16 TCGA-AD-6964-01 20 3210230 3210230 C T SLC4A11 Missense_Mutation p.S604N 0.10 tolerated(0.3) probably_damaging(0.986) TCGA-AD-6964-01 20 33067504 33067504 G T ITCH Missense_Mutation p.K617N 0.19 tolerated(0.06) benign(0.388) TCGA-AD-6964-01 20 33320381 33320381 G A NCOA6 Missense_Mutation p.A1994V 0.21 benign(0.003) TCGA-AD-6964-01 20 33330558 33330559 - T NCOA6 Frame_Shift_Ins p.P1168Tfs*41 0.08 TCGA-AD-6964-01 20 33447366 33447366 C T GGT7 Silent p.P298P 0.32 TCGA-AD-6964-01 20 35155374 35155374 A G DLGAP4 Silent p.S970S 0.31 TCGA-AD-6964-01 20 35422742 35422742 G A SOGA1 Missense_Mutation p.T1248M 0.31 tolerated(0.13) probably_damaging(0.996) TCGA-AD-6964-01 20 39802944 39802944 G A PLCG1 Missense_Mutation p.E1276K 0.11 tolerated(0.12) benign(0.118) TCGA-AD-6964-01 20 42196560 42196560 T C SGK2 Missense_Mutation p.L110P 0.15 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 20 42338651 42338651 G A MYBL2 Silent p.T518T 0.34 TCGA-AD-6964-01 20 42835589 42835589 G A OSER1 Silent p.S3S 0.27 TCGA-AD-6964-01 20 43090567 43090567 G A C20orf62 Silent p.C157C 0.15 TCGA-AD-6964-01 20 44567892 44567892 C T PCIF1 Missense_Mutation p.R55W 0.26 deleterious(0) probably_damaging(0.95) TCGA-AD-6964-01 20 44579160 44579162 CTT - ZNF335 In_Frame_Del p.K1088del 0.22 TCGA-AD-6964-01 20 44588010 44588010 G A ZNF335 Silent p.L695L 0.43 TCGA-AD-6964-01 20 44641107 44641107 G A MMP9 Missense_Mutation p.A406T 0.28 tolerated(0.07) possibly_damaging(0.649) TCGA-AD-6964-01 20 45188718 45188718 C T SLC13A3 Silent p.S584S 0.17 TCGA-AD-6964-01 20 45801424 45801424 C T EYA2 Silent p.G369G 0.25 TCGA-AD-6964-01 20 45905111 45905111 G A ZMYND8 Missense_Mutation p.S476L 0.23 deleterious_low_confidence(0.03) benign(0.054) TCGA-AD-6964-01 20 48491302 48491302 C - SLC9A8 Frame_Shift_Del p.P357Qfs*46 0.08 TCGA-AD-6964-01 20 4850589 4850589 A G SLC23A2 Missense_Mutation p.S405P 0.11 deleterious(0.04) possibly_damaging(0.855) TCGA-AD-6964-01 20 50287685 50287685 G T ATP9A Silent p.G383G 0.21 TCGA-AD-6964-01 20 50408357 50408357 T A SALL4 Missense_Mutation p.Q222L 0.22 tolerated(0.08) probably_damaging(0.989) TCGA-AD-6964-01 20 52198773 52198773 G T ZNF217 Missense_Mutation p.T198K 0.17 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 20 54974080 54974080 G A CSTF1 Missense_Mutation p.G235R 0.22 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 20 56993358 56993358 T C VAPB Silent p.R50R 0.14 TCGA-AD-6964-01 20 57035902 57035902 C T APCDD1L Missense_Mutation p.A484T 0.17 tolerated(0.43) possibly_damaging(0.682) TCGA-AD-6964-01 20 5924272 5924272 G A TRMT6 Silent p.G200G 0.20 TCGA-AD-6964-01 20 60905860 60905860 C T LAMA5 Missense_Mutation p.R1264Q 0.32 benign(0.01) TCGA-AD-6964-01 20 60921153 60921153 G A LAMA5 Silent p.G467G 0.10 TCGA-AD-6964-01 20 61981869 61981869 G T CHRNA4 Silent p.S298S 0.18 TCGA-AD-6964-01 20 61982237 61982237 T C CHRNA4 Missense_Mutation p.T176A 0.18 deleterious(0.01) benign(0.306) TCGA-AD-6964-01 20 62372671 62372671 G T SLC2A4RG Intron 0.38 TCGA-AD-6964-01 20 62572571 62572571 A G UCKL1 Intron 0.23 TCGA-AD-6964-01 20 62577831 62577831 C T UCKL1 Silent p.T93T 0.17 TCGA-AD-6964-01 21 17250698 17250698 G A USP25 Silent p.E1024E 0.14 TCGA-AD-6964-01 21 27425588 27425588 G A APP Silent p.C144C 0.36 TCGA-AD-6964-01 21 31538357 31538357 T C CLDN17 Silent p.Q193Q 0.13 TCGA-AD-6964-01 21 31661706 31661706 A T KRTAP25-1 Missense_Mutation p.S35T 0.08 tolerated(0.34) benign(0) TCGA-AD-6964-01 21 31768648 31768648 C A KRTAP13-1 Missense_Mutation p.R82S 0.26 tolerated(0.16) benign(0.273) TCGA-AD-6964-01 21 31965087 31965087 A G KRTAP6-3 Missense_Mutation p.Y101C 0.22 unknown(0) TCGA-AD-6964-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.20 TCGA-AD-6964-01 21 34053869 34053869 G A SYNJ1 Silent p.S469S 0.13 TCGA-AD-6964-01 21 34134464 34134464 G A PAXBP1 Missense_Mutation p.R272W 0.24 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 21 35107497 35107497 G A ITSN1 Missense_Mutation p.A112T 0.32 tolerated(0.72) unknown(0) TCGA-AD-6964-01 21 35183447 35183447 C T ITSN1 Missense_Mutation p.R830C 0.31 tolerated(0.06) benign(0.01) TCGA-AD-6964-01 21 37623528 37623528 G A DOPEY2 Silent p.A1689A 0.23 TCGA-AD-6964-01 21 41450761 41450761 T C DSCAM Missense_Mutation p.T1522A 0.09 deleterious(0.04) benign(0.026) TCGA-AD-6964-01 21 43255570 43255570 G A PRDM15 Silent p.L814L 0.20 TCGA-AD-6964-01 21 43826451 43826451 G A UBASH3A Missense_Mutation p.A50T 0.22 tolerated(0.05) benign(0.027) TCGA-AD-6964-01 21 43983939 43983939 A - SLC37A1 Frame_Shift_Del p.K364Rfs*22 0.20 TCGA-AD-6964-01 21 44840224 44840224 C T SIK1 Missense_Mutation p.A288T 0.28 tolerated(0.6) benign(0.002) TCGA-AD-6964-01 21 45391304 45391304 G A AGPAT3 Missense_Mutation p.G234R 0.32 tolerated(0.15) benign(0.001) TCGA-AD-6964-01 21 45681137 45681137 C T DNMT3L Silent p.A2A 0.30 TCGA-AD-6964-01 21 46078207 46078207 G - KRTAP12-3 3'UTR 0.25 TCGA-AD-6964-01 21 46387090 46387090 C T FAM207A Missense_Mutation p.A165V 0.29 tolerated(0.23) benign(0.012) TCGA-AD-6964-01 21 46705748 46705748 G A POFUT2 Missense_Mutation p.T76M 0.28 tolerated(0.1) benign(0.042) TCGA-AD-6964-01 21 46929315 46929315 G A COL18A1 Missense_Mutation p.D1279N 0.28 possibly_damaging(0.598) TCGA-AD-6964-01 21 47423836 47423836 G A COL6A1 Missense_Mutation p.G999D 0.09 deleterious(0.01) probably_damaging(0.966) TCGA-AD-6964-01 21 47704111 47704111 T C MCM3AP Missense_Mutation p.T364A 0.20 tolerated(0.75) benign(0) TCGA-AD-6964-01 21 47969809 47969809 C T DIP2A Intron 0.30 TCGA-AD-6964-01 22 17600912 17600912 G A CECR6 Missense_Mutation p.A369V 0.23 deleterious(0.03) probably_damaging(0.971) TCGA-AD-6964-01 22 18232941 18232941 C A BID Splice_Site p.X27_splice 0.11 TCGA-AD-6964-01 22 18918568 18918568 G A PRODH Silent p.S139S 0.38 TCGA-AD-6964-01 22 19222151 19222151 G A CLTCL1 Missense_Mutation p.R350C 0.24 deleterious(0.01) probably_damaging(0.964) TCGA-AD-6964-01 22 19344545 19344545 C T HIRA Missense_Mutation p.R755K 0.20 tolerated(0.44) benign(0.111) TCGA-AD-6964-01 22 19920044 19920044 G - TXNRD2 Intron 0.28 TCGA-AD-6964-01 22 19978217 19978217 C T ARVCF Missense_Mutation p.R34Q 0.10 deleterious(0) probably_damaging(0.984) TCGA-AD-6964-01 22 20043482 20043482 G A TANGO2 Missense_Mutation p.V133I 0.18 tolerated(0.33) benign(0.013) TCGA-AD-6964-01 22 20800863 20800863 C T KLHL22 Missense_Mutation p.G469D 0.35 tolerated(0.71) benign(0.005) TCGA-AD-6964-01 22 21998346 21998346 G A SDF2L1 Missense_Mutation p.R183H 0.26 tolerated(0.65) benign(0.141) TCGA-AD-6964-01 22 23656757 23656757 A C BCR Silent p.A1194A 0.19 TCGA-AD-6964-01 22 23658691 23658691 A G BCR 3'UTR 0.19 TCGA-AD-6964-01 22 24087071 24087071 T C ZNF70 Missense_Mutation p.Q86R 0.27 deleterious(0) benign(0.091) TCGA-AD-6964-01 22 24145518 24145518 C T SMARCB1 Silent p.N179N 0.15 TCGA-AD-6964-01 22 24629877 24629877 C - GGT5 Frame_Shift_Del p.G90Efs*10 0.20 TCGA-AD-6964-01 22 25024949 25024949 C T GGT1 3'UTR 0.22 TCGA-AD-6964-01 22 26736555 26736555 C T SEZ6L Silent p.G723G 0.26 TCGA-AD-6964-01 22 30951103 30951103 G T GAL3ST1 Missense_Mutation p.T370N 0.32 tolerated(0.34) benign(0.102) TCGA-AD-6964-01 22 30976157 30976157 C T PES1 Missense_Mutation p.G351D 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-AD-6964-01 22 31354670 31354670 C T MORC2 5'UTR 0.24 TCGA-AD-6964-01 22 31495879 31495879 C T SMTN Missense_Mutation p.A867V 0.21 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 22 35480397 35480397 G T ISX Missense_Mutation p.A135S 0.15 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 22 38167690 38167690 T C TRIOBP Missense_Mutation p.Y2295H 0.21 deleterious(0.01) benign(0.063) TCGA-AD-6964-01 22 38343338 38343338 C T C22orf23 Missense_Mutation p.C100Y 0.10 deleterious(0) probably_damaging(0.993) TCGA-AD-6964-01 22 38369851 38369851 T C SOX10 Missense_Mutation p.D351G 0.11 tolerated(0.37) benign(0.071) TCGA-AD-6964-01 22 38824021 38824021 C T KCNJ4 Silent p.S39S 0.23 TCGA-AD-6964-01 22 38964393 38964393 G A DMC1 Intron 0.37 TCGA-AD-6964-01 22 39358258 39388194 22:39358258-39388194 - APOBEC3B large deletion 0.23 TCGA-AD-6964-01 22 39710191 39710191 T C RPL3 Missense_Mutation p.Y291C 0.18 tolerated(0.17) benign(0.024) TCGA-AD-6964-01 22 39883680 39883680 C T MGAT3 Missense_Mutation p.R110C 0.26 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-AD-6964-01 22 39884666 39884666 C T MGAT3 Silent p.G438G 0.40 TCGA-AD-6964-01 22 39887315 39887315 C T MGAT3 3'UTR 0.12 TCGA-AD-6964-01 22 40819664 40819664 C T MKL1 Missense_Mutation p.R168Q 0.32 tolerated(0.12) benign(0.017) TCGA-AD-6964-01 22 41310258 41310258 C T XPNPEP3 Missense_Mutation p.L329F 0.15 deleterious(0) probably_damaging(0.989) TCGA-AD-6964-01 22 41751834 41751834 C T ZC3H7B Missense_Mutation p.P748S 0.19 deleterious(0) probably_damaging(0.987) TCGA-AD-6964-01 22 41914541 41914541 C A ACO2 Missense_Mutation p.H333N 0.22 tolerated_low_confidence(0.14) benign(0.018) TCGA-AD-6964-01 22 42093946 42093946 A G C22orf46 3'UTR 0.28 TCGA-AD-6964-01 22 42606473 42606473 T C TCF20 Silent p.K1613K 0.10 TCGA-AD-6964-01 22 43563350 43563350 T C TTLL12 3'UTR 0.33 TCGA-AD-6964-01 22 45607958 45607958 C T KIAA0930 Nonsense_Mutation p.W37* 0.31 TCGA-AD-6964-01 22 45959149 45959149 A G FBLN1 Intron 0.14 TCGA-AD-6964-01 22 46345819 46345819 G A WNT7B Silent p.F93F 0.36 TCGA-AD-6964-01 22 46773080 46773080 C T CELSR1 Missense_Mutation p.V2488I 0.20 tolerated(0.62) benign(0.014) TCGA-AD-6964-01 22 50281805 50281805 G A ZBED4 3'UTR 0.10 TCGA-AD-6964-01 22 50307402 50307402 C T ALG12 Silent p.K4K 0.17 TCGA-AD-6964-01 22 50552083 50552083 C T MOV10L1 Silent p.A250A 0.22 TCGA-AD-6964-01 22 50617427 50617427 G - PANX2 Frame_Shift_Del p.G587Afs*17 0.21 TCGA-AD-6964-01 22 50716665 50716665 G A PLXNB2 Missense_Mutation p.H1590Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 22 50726096 50726096 C A PLXNB2 Missense_Mutation p.E536D 0.29 tolerated(0.21) benign(0.004) TCGA-AD-6964-01 22 50728947 50728947 G A PLXNB2 Missense_Mutation p.R23C 0.17 deleterious(0.05) possibly_damaging(0.724) TCGA-AD-6964-01 22 50873400 50873400 C T PPP6R2 Missense_Mutation p.A470V 0.21 tolerated(0.09) possibly_damaging(0.723) TCGA-AD-6964-01 22 50885538 50885538 C A SBF1 3'UTR 0.15 TCGA-AD-6964-01 22 50897728 50897728 C T SBF1 Missense_Mutation p.R1261H 0.22 tolerated(0.07) probably_damaging(0.997) TCGA-AD-6964-01 22 50967599 50967599 A T TYMP Missense_Mutation p.V128D 0.29 deleterious(0.01) possibly_damaging(0.904) TCGA-AD-6964-01 22 51007811 51007811 G A CPT1B Silent p.L759L 0.21 TCGA-AD-6964-01 22 51044278 51044278 G T MAPK8IP2 Silent p.V679V 0.19 TCGA-AD-6964-01 2 100010995 100010995 A C EIF5B Silent p.P1012P 0.23 TCGA-AD-6964-01 2 101638911 101638911 A G TBC1D8 Missense_Mutation p.Y850H 0.30 deleterious(0.01) benign(0.179) TCGA-AD-6964-01 2 101655076 101655076 C T TBC1D8 Silent p.P359P 0.22 TCGA-AD-6964-01 2 102955363 102955363 G A IL1RL1 Missense_Mutation p.S43N 0.07 tolerated(0.5) benign(0.216) TCGA-AD-6964-01 2 105473009 105473009 G - POU3F3 Frame_Shift_Del p.G348Afs*21 0.14 TCGA-AD-6964-01 2 105858865 105858865 C T GPR45 Silent p.L184L 0.11 TCGA-AD-6964-01 2 109746189 109746189 G A SH3RF3 Missense_Mutation p.D65N 0.23 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 2 112686791 112686791 C A MERTK Silent p.S52S 0.17 TCGA-AD-6964-01 2 113082197 113082197 A G ZC3H6 Silent p.A603A 0.20 TCGA-AD-6964-01 2 120129876 120129877 - A DBI Frame_Shift_Ins p.Y146Ifs*19 0.18 TCGA-AD-6964-01 2 120799581 120799582 - A EPB41L5 Frame_Shift_Ins p.A63Sfs*8 0.16 TCGA-AD-6964-01 2 121107289 121107289 G A INHBB Missense_Mutation p.V355M 0.10 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 2 125504920 125504920 A T CNTNAP5 Missense_Mutation p.D730V 0.16 deleterious(0) possibly_damaging(0.721) TCGA-AD-6964-01 2 128014985 128014985 C T ERCC3 3'UTR 0.15 TCGA-AD-6964-01 2 128066194 128066194 C T MAP3K2 Missense_Mutation p.S534N 0.08 tolerated(0.56) benign(0.014) TCGA-AD-6964-01 2 128079649 128079649 C T MAP3K2 Missense_Mutation p.V340I 0.24 tolerated(0.05) benign(0.275) TCGA-AD-6964-01 2 128476955 128476955 C T WDR33 Missense_Mutation p.G882R 0.38 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-AD-6964-01 2 128522141 128522142 - A WDR33 Intron 0.19 TCGA-AD-6964-01 2 129025921 129025921 C T HS6ST1 Missense_Mutation p.A351T 0.08 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 2 130737628 130737628 G A RAB6C 5'UTR 0.12 TCGA-AD-6964-01 2 130956024 130956024 G A TUBA3E 5'UTR 0.09 TCGA-AD-6964-01 2 132021401 132021402 - A POTEE Frame_Shift_Ins p.N792Kfs*34 0.15 TCGA-AD-6964-01 2 132241671 132241671 C - MZT2A Frame_Shift_Del p.G147Afs*? 0.10 TCGA-AD-6964-01 2 132266133 132266133 T C AC093838.4 RNA 0.17 TCGA-AD-6964-01 2 132273215 132273215 G A AC093838.4 RNA 0.15 TCGA-AD-6964-01 2 133402861 133402861 G A GPR39 Silent p.S348S 0.25 TCGA-AD-6964-01 2 135848570 135848570 T C RAB3GAP1 Silent p.G51G 0.31 TCGA-AD-6964-01 2 136409479 136409479 A T R3HDM1 Silent p.P600P 0.31 TCGA-AD-6964-01 2 136537877 136537877 C T UBXN4 Missense_Mutation p.P437L 0.18 deleterious(0) probably_damaging(0.927) TCGA-AD-6964-01 2 137814057 137814057 T C THSD7B Silent p.F69F 0.11 TCGA-AD-6964-01 2 138771411 138771411 A G HNMT Missense_Mutation p.Q197R 0.24 tolerated(0.34) benign(0.077) TCGA-AD-6964-01 2 145146388 145146388 T C ZEB2 3'UTR 0.19 TCGA-AD-6964-01 2 145146954 145146954 T C ZEB2 3'UTR 0.10 TCGA-AD-6964-01 2 149227013 149227013 A C MBD5 Silent p.R501R 0.23 TCGA-AD-6964-01 2 149866659 149866659 A G KIF5C Missense_Mutation p.D854G 0.08 deleterious(0) probably_damaging(0.993) TCGA-AD-6964-01 2 152118306 152118306 G A RBM43 5'UTR 0.21 TCGA-AD-6964-01 2 152515676 152515676 T A NEB Missense_Mutation p.Y1993F 0.13 probably_damaging(0.999) TCGA-AD-6964-01 2 152711871 152711871 A G CACNB4 Missense_Mutation p.I296T 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-AD-6964-01 2 157184420 157184420 G T NR4A2 Silent p.A367A 0.32 TCGA-AD-6964-01 2 15732025 15732025 C G DDX1 5'UTR 0.09 TCGA-AD-6964-01 2 158272355 158272355 A C CYTIP Missense_Mutation p.I305S 0.21 tolerated(0.09) benign(0.432) TCGA-AD-6964-01 2 158300577 158300577 G A CYTIP 5'UTR 0.21 TCGA-AD-6964-01 2 160087231 160087231 C T TANC1 Missense_Mutation p.A1765V 0.25 tolerated_low_confidence(0.28) benign(0.001) TCGA-AD-6964-01 2 160289735 160289735 T C BAZ2B Missense_Mutation p.N478S 0.21 benign(0.292) TCGA-AD-6964-01 2 160628500 160628500 T A LY75 Silent p.A1828A 0.14 TCGA-AD-6964-01 2 160958329 160958329 T C ITGB6 Missense_Mutation p.Y762C 0.12 deleterious(0) probably_damaging(0.992) TCGA-AD-6964-01 2 166732676 166732676 T C TTC21B Missense_Mutation p.Q1291R 0.21 tolerated(0.22) benign(0.005) TCGA-AD-6964-01 2 166852564 166852564 A T SCN1A Missense_Mutation p.L1514I 0.25 deleterious(0) probably_damaging(0.914) TCGA-AD-6964-01 2 168074795 168074795 G A XIRP2 Silent p.Q281Q 0.21 TCGA-AD-6964-01 2 168726445 168726445 G A B3GALT1 Missense_Mutation p.R299Q 0.21 tolerated(0.4) benign(0.025) TCGA-AD-6964-01 2 171356292 171356292 A T MYO3B Missense_Mutation p.E1088V 0.20 deleterious(0.05) benign(0.315) TCGA-AD-6964-01 2 171715334 171715334 T - GAD1 Frame_Shift_Del p.W516Gfs*30 0.13 TCGA-AD-6964-01 2 172017048 172017048 C T TLK1 5'UTR 0.12 TCGA-AD-6964-01 2 173885423 173885423 C T RAPGEF4 Nonsense_Mutation p.R745* 0.22 TCGA-AD-6964-01 2 174774516 174774516 A G SP3 3'UTR 0.36 TCGA-AD-6964-01 2 174820423 174820423 C T SP3 Missense_Mutation p.D273N 0.20 deleterious(0.03) probably_damaging(0.972) TCGA-AD-6964-01 2 179319250 179319250 A G DFNB59 Missense_Mutation p.T135A 0.10 tolerated(0.4) benign(0.002) TCGA-AD-6964-01 2 179399802 179399802 G T TTN Missense_Mutation p.A33847D 0.24 TCGA-AD-6964-01 2 179402296 179402296 G A TTN Missense_Mutation p.T33213I 0.25 TCGA-AD-6964-01 2 179429955 179429955 G A TTN Silent p.I26968I 0.04 TCGA-AD-6964-01 2 179431832 179431832 T A TTN Missense_Mutation p.T26343S 0.25 TCGA-AD-6964-01 2 179454575 179454575 C T TTN Missense_Mutation p.R20626Q 0.10 TCGA-AD-6964-01 2 179465640 179465640 G T TTN Missense_Mutation p.A18664D 0.30 TCGA-AD-6964-01 2 179559370 179559370 T C TTN Missense_Mutation p.K10461R 0.07 TCGA-AD-6964-01 2 17961388 17961388 C T GEN1 Missense_Mutation p.R470C 0.40 deleterious(0.03) benign(0.001) TCGA-AD-6964-01 2 179639029 179639029 T C TTN Missense_Mutation p.Q2321R 0.15 TCGA-AD-6964-01 2 179644669 179644669 A - TTN Intron 0.08 TCGA-AD-6964-01 2 190531840 190531840 G - ASNSD1 Frame_Shift_Del p.G329Afs*17 0.17 TCGA-AD-6964-01 2 190593549 190593549 T C ANKAR Splice_Site p.X1065_splice 0.20 TCGA-AD-6964-01 2 192711194 192711194 T C SDPR Missense_Mutation p.N153S 0.08 tolerated(0.09) benign(0.201) TCGA-AD-6964-01 2 196729451 196729452 - T DNAH7 Frame_Shift_Ins p.P2310Tfs*50 0.11 TCGA-AD-6964-01 2 197645342 197645342 C A GTF3C3 Missense_Mutation p.D387Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 2 201171051 201171051 T C SPATS2L Intron 0.22 TCGA-AD-6964-01 2 201173778 201173778 G A SPATS2L Intron 0.21 TCGA-AD-6964-01 2 201776085 201776088 AATA - ORC2 Frame_Shift_Del p.L557* 0.39 TCGA-AD-6964-01 2 202245445 202245445 C A TRAK2 Nonsense_Mutation p.G856* 0.24 TCGA-AD-6964-01 2 202252667 202252667 T C TRAK2 Silent p.A485A 0.22 TCGA-AD-6964-01 2 202342451 202342451 T C STRADB Missense_Mutation p.Y220H 0.10 tolerated(0.93) benign(0.123) TCGA-AD-6964-01 2 202402200 202402200 T C ALS2CR11 Missense_Mutation p.I389V 0.07 tolerated(1) benign(0.001) TCGA-AD-6964-01 2 20990022 20990024 TGT - C2orf43 In_Frame_Del p.T97del 0.21 TCGA-AD-6964-01 2 210559703 210559703 G A MAP2 Missense_Mutation p.A937T 0.23 deleterious_low_confidence(0.02) benign(0.164) TCGA-AD-6964-01 2 211018375 211018375 T - KANSL1L Frame_Shift_Del p.N311Mfs*63 0.22 TCGA-AD-6964-01 2 212248283 212248283 G - ERBB4 3'UTR 0.14 TCGA-AD-6964-01 2 21233711 21233711 G A APOB Missense_Mutation p.T2010I 0.08 benign(0.001) TCGA-AD-6964-01 2 21233771 21233771 T C APOB Missense_Mutation p.N1990S 0.06 benign(0.115) TCGA-AD-6964-01 2 21234060 21234060 T C APOB Missense_Mutation p.N1894D 0.08 benign(0.339) TCGA-AD-6964-01 2 215855503 215855503 A G ABCA12 Missense_Mutation p.Y1183H 0.14 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 2 216257675 216257675 T C FN1 Missense_Mutation p.T1350A 0.11 tolerated(0.51) benign(0.007) TCGA-AD-6964-01 2 217148425 217148425 C A MARCH4 Missense_Mutation p.D182Y 0.28 deleterious(0) probably_damaging(0.98) TCGA-AD-6964-01 2 219869033 219869033 A G CCDC108 Silent p.P1732P 0.22 TCGA-AD-6964-01 2 219900150 219900150 C T CCDC108 Intron 0.14 TCGA-AD-6964-01 2 220146464 220146464 G A DNAJB2 Missense_Mutation p.R67H 0.19 deleterious(0.02) benign(0.006) TCGA-AD-6964-01 2 220402397 220402397 C - ASIC4 Frame_Shift_Del p.L592Cfs*16 0.20 TCGA-AD-6964-01 2 223920330 223920330 T - KCNE4 3'UTR 0.24 TCGA-AD-6964-01 2 225346735 225346735 C T CUL3 Missense_Mutation p.A635T 0.26 tolerated(0.06) possibly_damaging(0.74) TCGA-AD-6964-01 2 228220457 228220457 G A MFF Missense_Mutation p.A293T 0.26 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 2 229890279 229890279 G A PID1 3'UTR 0.38 TCGA-AD-6964-01 2 230411765 230411765 G A DNER Silent p.R297R 0.14 TCGA-AD-6964-01 2 232323789 232323789 G A NCL Missense_Mutation p.A363V 0.08 probably_damaging(0.997) TCGA-AD-6964-01 2 233243970 233243970 T C ALPP Missense_Mutation p.L85P 0.07 tolerated(0.27) benign(0.012) TCGA-AD-6964-01 2 233394783 233394783 A G CHRND Missense_Mutation p.N252D 0.26 deleterious(0) possibly_damaging(0.68) TCGA-AD-6964-01 2 234449323 234449323 A G USP40 Silent p.H396H 0.26 TCGA-AD-6964-01 2 239039298 239039298 G - ESPNL Frame_Shift_Del p.V650Cfs*35 0.28 TCGA-AD-6964-01 2 240056326 240056326 T C HDAC4 Missense_Mutation p.H331R 0.15 tolerated(0.12) benign(0.016) TCGA-AD-6964-01 2 240061475 240061475 C T HDAC4 Missense_Mutation p.A295T 0.26 tolerated(0.54) probably_damaging(0.999) TCGA-AD-6964-01 2 241066357 241066357 T G MYEOV2 Silent p.R128R 0.14 TCGA-AD-6964-01 2 241492425 241492425 T C ANKMY1 Missense_Mutation p.Y40C 0.14 deleterious(0.03) probably_damaging(0.98) TCGA-AD-6964-01 2 242075415 242075415 C T PASK Missense_Mutation p.D393N 0.24 deleterious(0.04) probably_damaging(0.968) TCGA-AD-6964-01 2 242407619 242407619 G A FARP2 Missense_Mutation p.R653H 0.26 tolerated(0.26) benign(0.045) TCGA-AD-6964-01 2 242743017 242743017 C T GAL3ST2 Silent p.R211R 0.19 TCGA-AD-6964-01 2 25186335 25186335 A C DNAJC27 Missense_Mutation p.V60G 0.18 tolerated(0.1) possibly_damaging(0.529) TCGA-AD-6964-01 2 25799750 25799750 C T DTNB Missense_Mutation p.G278D 0.19 deleterious(0.03) probably_damaging(0.964) TCGA-AD-6964-01 2 25966199 25966199 T C ASXL2 Missense_Mutation p.T1003A 0.11 tolerated(0.57) benign(0.002) TCGA-AD-6964-01 2 25973187 25973187 G T ASXL2 Missense_Mutation p.P413H 0.22 tolerated(0.61) benign(0.401) TCGA-AD-6964-01 2 26407414 26407414 T C GAREML Missense_Mutation p.C233R 0.28 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 2 26409205 26409205 T A GAREML Missense_Mutation p.Y526N 0.18 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 2 26684670 26684670 G A OTOF Silent p.S1809S 0.26 TCGA-AD-6964-01 2 26739456 26739456 G A OTOF Silent p.C113C 0.50 TCGA-AD-6964-01 2 27322186 27322186 G T CGREF1 3'Flank 0.21 TCGA-AD-6964-01 2 27444100 27444100 G A CAD Silent p.S79S 0.20 TCGA-AD-6964-01 2 27458286 27458286 C T CAD Silent p.G1320G 0.35 TCGA-AD-6964-01 2 27549651 27549651 C T GTF3C2 Missense_Mutation p.R876H 0.29 deleterious(0.01) probably_damaging(0.91) TCGA-AD-6964-01 2 29004683 29004683 T C PPP1CB Silent p.D165D 0.08 TCGA-AD-6964-01 2 29386762 29386762 C T CLIP4 Nonsense_Mutation p.Q534* 0.21 TCGA-AD-6964-01 2 31484520 31484520 C T EHD3 Missense_Mutation p.R341W 0.39 deleterious(0) benign(0.339) TCGA-AD-6964-01 2 32530567 32530567 G A YIPF4 Missense_Mutation p.V203M 0.25 deleterious(0) probably_damaging(0.989) TCGA-AD-6964-01 2 3685159 3685159 G A COLEC11 Missense_Mutation p.G94D 0.26 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 2 37596880 37596881 - T QPCT Frame_Shift_Ins p.P262Sfs*14 0.30 TCGA-AD-6964-01 2 39040985 39040985 G A DHX57 Missense_Mutation p.A1220V 0.08 deleterious(0) probably_damaging(0.994) TCGA-AD-6964-01 2 43452512 43452512 C - ZFP36L2 Frame_Shift_Del p.G144Afs*43 0.27 TCGA-AD-6964-01 2 46986141 46986141 G A SOCS5 Missense_Mutation p.V158I 0.26 tolerated(0.29) benign(0.05) TCGA-AD-6964-01 2 47132658 47132658 C A MCFD2 Missense_Mutation p.D129Y 0.06 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 2 48848017 48848017 G A STON1-GTF2A1L Missense_Mutation p.D721N 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-AD-6964-01 2 54125045 54125046 - A PSME4 Frame_Shift_Ins p.V1190Cfs*2 0.12 TCGA-AD-6964-01 2 54895588 54895588 C T SPTBN1 Missense_Mutation p.A2326V 0.26 deleterious(0) probably_damaging(0.915) TCGA-AD-6964-01 2 55536367 55536367 C T CCDC88A Missense_Mutation p.R1367H 0.17 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 2 55576663 55576663 C T CCDC88A Silent p.L291L 0.27 TCGA-AD-6964-01 2 5841387 5841387 C - SOX11 3'UTR 0.24 TCGA-AD-6964-01 2 61571056 61571056 T A USP34 Silent p.G798G 0.10 TCGA-AD-6964-01 2 61709610 61709610 A G XPO1 Silent p.S959S 0.10 TCGA-AD-6964-01 2 61722693 61722693 T C XPO1 Missense_Mutation p.E315G 0.20 tolerated(0.11) possibly_damaging(0.57) TCGA-AD-6964-01 2 62449563 62449563 T C B3GNT2 Missense_Mutation p.Y70H 0.13 tolerated(0.77) benign(0.016) TCGA-AD-6964-01 2 669510 669510 C T TMEM18 3'UTR 0.24 TCGA-AD-6964-01 2 70315551 70315551 G A PCBP1 Missense_Mutation p.G226R 0.14 deleterious(0.02) benign(0.259) TCGA-AD-6964-01 2 71361229 71361229 C T MPHOSPH10 Missense_Mutation p.S307L 0.19 tolerated(0.51) benign(0.017) TCGA-AD-6964-01 2 71376420 71376420 G A MPHOSPH10 Missense_Mutation p.R578Q 0.10 deleterious(0.03) probably_damaging(0.937) TCGA-AD-6964-01 2 73449041 73449041 C A SMYD5 Missense_Mutation p.L209M 0.19 deleterious(0.02) probably_damaging(0.912) TCGA-AD-6964-01 2 74598138 74598138 C T DCTN1 Missense_Mutation p.D271N 0.18 deleterious(0.01) possibly_damaging(0.595) TCGA-AD-6964-01 2 74726458 74726458 A G LBX2 Intron 0.16 TCGA-AD-6964-01 2 75893155 75893156 - T GCFC2 Frame_Shift_Ins p.W710Mfs*3 0.16 TCGA-AD-6964-01 2 84518119 84518119 G A FUNDC2P2 RNA 0.25 TCGA-AD-6964-01 2 84518228 84518228 C T FUNDC2P2 RNA 0.25 TCGA-AD-6964-01 2 85532498 85532498 C - TCF7L1 Frame_Shift_Del p.S323Afs*2 0.14 TCGA-AD-6964-01 2 85628420 85628420 G T CAPG Silent p.T128T 0.32 TCGA-AD-6964-01 2 85628437 85628437 A G CAPG Missense_Mutation p.S123P 0.16 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 2 88751436 88751436 G C FOXI3 RNA 0.13 TCGA-AD-6964-01 2 89399564 89399564 C T IGKV1-16 Missense_Mutation p.A47T 0.08 deleterious(0.04) benign(0.361) TCGA-AD-6964-01 2 89999295 89999295 G A IGKV2D-28 Missense_Mutation p.V33I 0.20 tolerated(0.17) benign(0.036) TCGA-AD-6964-01 2 90229439 90229439 A G IGKV1D-42 Missense_Mutation p.R87G 0.17 deleterious(0.03) benign(0.001) TCGA-AD-6964-01 2 96589250 96589250 A G ANKRD36C 3'Flank 0.10 TCGA-AD-6964-01 2 96780870 96780870 A G ADRA2B Missense_Mutation p.V340A 0.09 tolerated(0.78) benign(0.05) TCGA-AD-6964-01 2 96944585 96944585 C T SNRNP200 Missense_Mutation p.R1762H 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-AD-6964-01 2 97877475 97877475 A T ANKRD36 Missense_Mutation p.T1156S 0.09 tolerated(0.06) possibly_damaging(0.54) TCGA-AD-6964-01 2 98275871 98275871 C T ACTR1B Missense_Mutation p.E87K 0.26 deleterious(0.01) possibly_damaging(0.509) TCGA-AD-6964-01 2 98355976 98355976 G - ZAP70 3'UTR 0.17 TCGA-AD-6964-01 2 99012788 99012789 - T CNGA3 Frame_Shift_Ins p.L386Ffs*33 0.08 TCGA-AD-6964-01 2 99342963 99342963 C A MGAT4A 5'UTR 0.15 TCGA-AD-6964-01 2 99936053 99936053 G T TXNDC9 3'UTR 0.30 TCGA-AD-6964-01 3 10081417 10081417 A G FANCD2 Missense_Mutation p.K195E 0.23 deleterious(0) possibly_damaging(0.897) TCGA-AD-6964-01 3 10491125 10491125 T C ATP2B2 Missense_Mutation p.M35V 0.11 deleterious(0.02) possibly_damaging(0.636) TCGA-AD-6964-01 3 108107881 108107881 C T MYH15 Missense_Mutation p.R1844H 0.36 deleterious(0.04) benign(0.043) TCGA-AD-6964-01 3 108205371 108205371 G A MYH15 Silent p.L312L 0.15 TCGA-AD-6964-01 3 108355511 108355511 G A DZIP3 Missense_Mutation p.V323I 0.22 tolerated(0.21) benign(0.009) TCGA-AD-6964-01 3 111312929 111312929 A G ZBED2 Silent p.S40S 0.10 TCGA-AD-6964-01 3 113164121 113164121 A G SPICE1 3'UTR 0.26 TCGA-AD-6964-01 3 113179497 113179497 C T SPICE1 Missense_Mutation p.G468R 0.05 deleterious(0.05) benign(0.077) TCGA-AD-6964-01 3 114070275 114070275 T C ZBTB20 Missense_Mutation p.E217G 0.21 tolerated(0.19) probably_damaging(0.932) TCGA-AD-6964-01 3 119150811 119150811 C T TMEM39A 3'UTR 0.17 TCGA-AD-6964-01 3 119545571 119545571 G A GSK3B 3'UTR 0.22 TCGA-AD-6964-01 3 120500049 120500049 G A GTF2E1 Missense_Mutation p.G351D 0.32 tolerated(0.62) benign(0.081) TCGA-AD-6964-01 3 121591409 121591409 G T EAF2 Missense_Mutation p.M170I 0.11 tolerated(1) benign(0.048) TCGA-AD-6964-01 3 121994885 121994885 G T CASR Missense_Mutation p.R535M 0.14 deleterious(0.02) possibly_damaging(0.615) TCGA-AD-6964-01 3 123649986 123649986 G A CCDC14 Missense_Mutation p.R588C 0.22 deleterious(0) probably_damaging(0.942) TCGA-AD-6964-01 3 123675174 123675174 A G CCDC14 Intron 0.11 TCGA-AD-6964-01 3 124281804 124281804 C T KALRN Missense_Mutation p.R55W 0.14 deleterious(0) probably_damaging(0.953) TCGA-AD-6964-01 3 124351287 124351287 A G KALRN Missense_Mutation p.S36G 0.18 tolerated(0.09) benign(0) TCGA-AD-6964-01 3 124351294 124351294 A T KALRN Missense_Mutation p.N38I 0.17 deleterious(0) possibly_damaging(0.809) TCGA-AD-6964-01 3 124627081 124627081 A G MUC13 Silent p.F483F 0.30 TCGA-AD-6964-01 3 125282633 125282633 T - OSBPL11 Frame_Shift_Del p.N308Mfs*29 0.20 TCGA-AD-6964-01 3 126261310 126261310 G A CHST13 Silent p.A305A 0.14 TCGA-AD-6964-01 3 127396326 127396326 C T ABTB1 Missense_Mutation p.P261S 0.08 tolerated(0.08) possibly_damaging(0.78) TCGA-AD-6964-01 3 127786337 127786337 C A SEC61A1 Missense_Mutation p.S350Y 0.11 deleterious(0) probably_damaging(0.914) TCGA-AD-6964-01 3 129035056 129035056 G A H1FX 5'UTR 0.21 TCGA-AD-6964-01 3 129140524 129140524 G A EFCAB12 Nonsense_Mutation p.R58* 0.08 TCGA-AD-6964-01 3 132345608 132345608 T C ACAD11 Missense_Mutation p.Q375R 0.18 tolerated(0.3) benign(0.011) TCGA-AD-6964-01 3 132411561 132411561 G A NPHP3 Silent p.H804H 0.21 TCGA-AD-6964-01 3 133930412 133930412 C T RYK Missense_Mutation p.A130T 0.31 deleterious(0.02) possibly_damaging(0.488) TCGA-AD-6964-01 3 13441257 13441257 C T NUP210 Missense_Mutation p.R91H 0.32 deleterious(0) probably_damaging(0.939) TCGA-AD-6964-01 3 136287655 136287655 C T STAG1 Missense_Mutation p.A116T 0.10 deleterious(0.01) benign(0.271) TCGA-AD-6964-01 3 136664708 136664708 C T NCK1 Silent p.D170D 0.14 TCGA-AD-6964-01 3 1367620 1367620 A T CNTN6 Missense_Mutation p.E356D 0.10 tolerated(0.18) benign(0.423) TCGA-AD-6964-01 3 138762950 138762950 T C PRR23C Silent p.A171A 0.10 TCGA-AD-6964-01 3 140785512 140785512 G A SPSB4 Missense_Mutation p.S189N 0.22 deleterious(0.01) probably_damaging(0.926) TCGA-AD-6964-01 3 141291993 141291993 G A RASA2 Missense_Mutation p.C430Y 0.20 tolerated(0.16) possibly_damaging(0.71) TCGA-AD-6964-01 3 142746004 142746004 C T U2SURP Silent p.L430L 0.18 TCGA-AD-6964-01 3 142841089 142841089 G A CHST2 Silent p.T477T 0.32 TCGA-AD-6964-01 3 145788544 145788544 T - PLOD2 Frame_Shift_Del p.N746Mfs*11 0.11 TCGA-AD-6964-01 3 14763253 14763253 G A C3orf20 Missense_Mutation p.A510T 0.24 tolerated(0.09) possibly_damaging(0.869) TCGA-AD-6964-01 3 149216619 149216619 T A TM4SF4 Missense_Mutation p.M171K 0.12 deleterious(0.02) possibly_damaging(0.46) TCGA-AD-6964-01 3 149470246 149470246 G A COMMD2 5'UTR 0.23 TCGA-AD-6964-01 3 151045815 151045815 A G P2RY13 Silent p.N343N 0.11 TCGA-AD-6964-01 3 152132786 152132786 G T MBNL1 Silent p.T77T 0.09 TCGA-AD-6964-01 3 154032839 154032839 A G DHX36 Missense_Mutation p.M200T 0.30 deleterious(0) possibly_damaging(0.809) TCGA-AD-6964-01 3 160037702 160037702 T C IFT80 Missense_Mutation p.N268S 0.17 tolerated(0.52) benign(0.002) TCGA-AD-6964-01 3 160073829 160073829 T C IFT80 Missense_Mutation p.H250R 0.19 deleterious(0) benign(0.167) TCGA-AD-6964-01 3 16327858 16327858 G A OXNAD1 Missense_Mutation p.A65T 0.13 tolerated(0.34) benign(0.001) TCGA-AD-6964-01 3 164906381 164906381 C T SLITRK3 Silent p.P746P 0.38 TCGA-AD-6964-01 3 167745582 167745582 A G GOLIM4 Silent p.D519D 0.10 TCGA-AD-6964-01 3 167813191 167813191 C T GOLIM4 5'UTR 0.23 TCGA-AD-6964-01 3 169381249 169381249 C T MECOM 5'UTR 0.23 TCGA-AD-6964-01 3 169497081 169497081 G A MYNN Silent p.Q264Q 0.08 TCGA-AD-6964-01 3 170198402 170198402 G A SLC7A14 Missense_Mutation p.P557S 0.27 deleterious(0.01) probably_damaging(0.915) TCGA-AD-6964-01 3 172080484 172080484 A T FNDC3B Nonsense_Mutation p.K953* 0.09 TCGA-AD-6964-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.09 tolerated(0.36) benign(0.4) TCGA-AD-6964-01 3 179291194 179291194 T C ACTL6A Silent p.H105H 0.10 TCGA-AD-6964-01 3 179478931 179478931 G A USP13 Silent p.Q660Q 0.08 TCGA-AD-6964-01 3 181430792 181430792 C T SOX2 Missense_Mutation p.T215I 0.29 deleterious(0.05) benign(0.024) TCGA-AD-6964-01 3 183014951 183014951 C T MCF2L2 Missense_Mutation p.S437N 0.20 tolerated(0.38) benign(0.068) TCGA-AD-6964-01 3 183097178 183097178 G A MCF2L2 Missense_Mutation p.A61V 0.08 deleterious(0) benign(0.378) TCGA-AD-6964-01 3 183273212 183273212 C T KLHL6 Missense_Mutation p.C77Y 0.08 tolerated(1) possibly_damaging(0.833) TCGA-AD-6964-01 3 183952511 183952511 C T VWA5B2 Silent p.L305L 0.19 TCGA-AD-6964-01 3 184717501 184717501 A G VPS8 Missense_Mutation p.H1285R 0.26 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 3 184742172 184742172 A T VPS8 Nonsense_Mutation p.K1351* 0.11 TCGA-AD-6964-01 3 185986670 185986670 C T DGKG Missense_Mutation p.V346I 0.17 tolerated(0.14) benign(0.327) TCGA-AD-6964-01 3 186505132 186505132 T A EIF4A2 Intron 0.11 TCGA-AD-6964-01 3 186917712 186917712 A G RTP1 Missense_Mutation p.T216A 0.10 tolerated(0.66) benign(0.012) TCGA-AD-6964-01 3 190986179 190986180 - T UTS2B 3'UTR 0.19 TCGA-AD-6964-01 3 192516188 192516188 T A MB21D2 Missense_Mutation p.D488V 0.09 deleterious(0) probably_damaging(0.942) TCGA-AD-6964-01 3 194790642 194790642 G A XXYLT1 Silent p.L328L 0.28 TCGA-AD-6964-01 3 195512967 195512967 G T MUC4 Silent p.T1828T 0.10 TCGA-AD-6964-01 3 195597006 195597006 G - TNK2 Frame_Shift_Del p.Q571Sfs*3 0.19 TCGA-AD-6964-01 3 196778526 196778526 G A DLG1 Missense_Mutation p.R866C 0.34 deleterious(0) probably_damaging(0.989) TCGA-AD-6964-01 3 197241228 197241228 T C BDH1 Missense_Mutation p.S157G 0.22 deleterious(0.03) possibly_damaging(0.743) TCGA-AD-6964-01 3 197687179 197687179 G A LMLN Nonsense_Mutation p.W29* 0.15 TCGA-AD-6964-01 3 20193994 20193994 G C KAT2B Missense_Mutation p.E826Q 0.11 deleterious(0.02) possibly_damaging(0.843) TCGA-AD-6964-01 3 27233606 27233606 G A NEK10 Missense_Mutation p.R807W 0.07 tolerated(0.08) probably_damaging(0.994) TCGA-AD-6964-01 3 27436607 27436607 C T SLC4A7 Splice_Site p.X893_splice 0.10 TCGA-AD-6964-01 3 30713643 30713643 T C TGFBR2 Missense_Mutation p.L348P 0.22 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 3 37033489 37033489 C T EPM2AIP1 Silent p.A360A 0.20 TCGA-AD-6964-01 3 3888619 3888619 T - LRRN1 3'UTR 0.15 TCGA-AD-6964-01 3 39229341 39229341 G A XIRP1 Silent p.D532D 0.16 TCGA-AD-6964-01 3 41266134 41266136 CTT - CTNNB1 In_Frame_Del p.S45del 0.28 TCGA-AD-6964-01 3 419529 419529 A G CHL1 Missense_Mutation p.I594V 0.16 deleterious(0.05) benign(0.071) TCGA-AD-6964-01 3 43344784 43344784 T C SNRK Missense_Mutation p.V30A 0.19 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 3 43345276 43345276 C A SNRK Missense_Mutation p.P194H 0.12 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 3 44541741 44541741 A G ZNF852 Silent p.G176G 0.21 TCGA-AD-6964-01 3 44541753 44541753 C A ZNF852 Silent p.S172S 0.21 TCGA-AD-6964-01 3 44598829 44598829 T G ZKSCAN7 Missense_Mutation p.L97R 0.10 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 3 44637172 44637173 - A ZNF660 3'UTR 0.15 TCGA-AD-6964-01 3 45052750 45052750 A G EXOSC7 Silent p.V265V 0.11 TCGA-AD-6964-01 3 45637325 45637325 G - LIMD1 Frame_Shift_Del p.G320Vfs*6 0.21 TCGA-AD-6964-01 3 45972609 45972609 C T FYCO1 Missense_Mutation p.S1402N 0.22 deleterious(0) possibly_damaging(0.791) TCGA-AD-6964-01 3 46008091 46008091 A G FYCO1 Missense_Mutation p.V912A 0.10 deleterious(0) benign(0.188) TCGA-AD-6964-01 3 46008818 46008818 T C FYCO1 Missense_Mutation p.I670V 0.10 tolerated(0.4) probably_damaging(0.994) TCGA-AD-6964-01 3 47036645 47036645 C T NBEAL2 Missense_Mutation p.R474C 0.23 tolerated(0.08) benign(0.004) TCGA-AD-6964-01 3 47315066 47315066 C - KIF9 Frame_Shift_Del p.I115Sfs*12 0.15 TCGA-AD-6964-01 3 47537587 47537587 G A ELP6 Missense_Mutation p.A258V 0.32 deleterious(0) possibly_damaging(0.611) TCGA-AD-6964-01 3 47917234 47917234 G A MAP4 Missense_Mutation p.R755C 0.20 deleterious(0) probably_damaging(0.991) TCGA-AD-6964-01 3 48465485 48465485 C - PLXNB1 Frame_Shift_Del p.G179Vfs*41 0.19 TCGA-AD-6964-01 3 48677486 48677486 G A CELSR3 Missense_Mutation p.R3178W 0.24 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-AD-6964-01 3 48685385 48685385 C - CELSR3 Frame_Shift_Del p.A2340Pfs*45 0.14 TCGA-AD-6964-01 3 48694461 48694461 A G CELSR3 Missense_Mutation p.Y1357H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6964-01 3 49051482 49051482 C T WDR6 Missense_Mutation p.R869W 0.31 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 3 49723700 49723700 A G MST1 Intron 0.20 TCGA-AD-6964-01 3 50127814 50127815 - A RBM5 Intron 0.09 TCGA-AD-6964-01 3 50325515 50325516 - A IFRD2 3'UTR 0.33 TCGA-AD-6964-01 3 50655080 50655080 G - MAPKAPK3 Frame_Shift_Del p.R31Gfs*9 0.30 TCGA-AD-6964-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.29 TCGA-AD-6964-01 3 51423767 51423767 G T MANF Splice_Site p.X74_splice 0.08 TCGA-AD-6964-01 3 51433531 51433531 A G VPRBP 3'UTR 0.10 TCGA-AD-6964-01 3 5216048 5216048 G A ARL8B Missense_Mutation p.D154N 0.23 tolerated(0.19) benign(0.012) TCGA-AD-6964-01 3 52431826 52431826 C T DNAH1 Missense_Mutation p.A3964V 0.18 benign(0.043) TCGA-AD-6964-01 3 52448586 52448586 G A PHF7 Missense_Mutation p.V57M 0.23 tolerated(0.07) benign(0.066) TCGA-AD-6964-01 3 52544424 52544425 - G STAB1 Frame_Shift_Ins p.D898Gfs*9 0.13 TCGA-AD-6964-01 3 52558720 52558720 C T NT5DC2 Silent p.A480A 0.24 TCGA-AD-6964-01 3 52568677 52568677 G A NT5DC2 5'Flank 0.12 TCGA-AD-6964-01 3 56601001 56601001 A T CCDC66 Missense_Mutation p.D245V 0.24 deleterious(0) probably_damaging(0.988) TCGA-AD-6964-01 3 57108785 57108785 G A SPATA12 3'UTR 0.20 TCGA-AD-6964-01 3 57542657 57542657 G A PDE12 Missense_Mutation p.S184N 0.35 tolerated(0.26) benign(0.001) TCGA-AD-6964-01 3 57743485 57743485 G A SLMAP Missense_Mutation p.R36H 0.16 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 3 58133972 58133972 C T FLNB Missense_Mutation p.A1954V 0.11 tolerated(0.1) benign(0.44) TCGA-AD-6964-01 3 58382815 58382815 C T PXK Missense_Mutation p.A291V 0.11 deleterious(0.02) possibly_damaging(0.493) TCGA-AD-6964-01 3 58512208 58512208 T C ACOX2 Missense_Mutation p.Y444C 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-AD-6964-01 3 62229480 62229481 - A PTPRG Frame_Shift_Ins p.C794Mfs*20 0.21 TCGA-AD-6964-01 3 62278997 62278997 G T PTPRG 3'UTR 0.23 TCGA-AD-6964-01 3 63968081 63968081 C T ATXN7 Silent p.D324D 0.29 TCGA-AD-6964-01 3 71733609 71733609 G T EIF4E3 3'UTR 0.29 TCGA-AD-6964-01 3 71733741 71733741 G A EIF4E3 3'UTR 0.17 TCGA-AD-6964-01 3 72799331 72799331 A G SHQ1 3'UTR 0.32 TCGA-AD-6964-01 3 73433314 73433314 G A PDZRN3 Silent p.Y801Y 0.33 TCGA-AD-6964-01 3 7620555 7620555 G A GRM7 Silent p.V654V 0.24 TCGA-AD-6964-01 3 78655925 78655925 C T ROBO1 Missense_Mutation p.A1568T 0.20 tolerated_low_confidence(0.53) benign(0.002) TCGA-AD-6964-01 3 8543607 8543607 C - LMCD1 5'UTR 0.18 TCGA-AD-6964-01 3 93593245 93593245 A G PROS1 Silent p.V625V 0.09 TCGA-AD-6964-01 3 97634569 97634569 C T CRYBG3 Missense_Mutation p.P796S 0.17 tolerated(0.07) probably_damaging(1) TCGA-AD-6964-01 3 97868615 97868615 C A OR5H14 Missense_Mutation p.P129H 0.20 deleterious(0) probably_damaging(0.967) TCGA-AD-6964-01 4 103644150 103644150 G A MANBA Missense_Mutation p.R143C 0.19 tolerated(0.12) benign(0.035) TCGA-AD-6964-01 4 106159134 106159134 A G TET2 Intron 0.22 TCGA-AD-6964-01 4 106197498 106197498 C T TET2 Missense_Mutation p.S1944F 0.09 deleterious(0) benign(0.14) TCGA-AD-6964-01 4 106861270 106861270 A G NPNT Missense_Mutation p.R212G 0.41 deleterious(0.03) benign(0.039) TCGA-AD-6964-01 4 110580237 110580237 C T CCDC109B Missense_Mutation p.P57L 0.17 tolerated(0.09) benign(0.005) TCGA-AD-6964-01 4 110745623 110745623 G A GAR1 3'UTR 0.10 TCGA-AD-6964-01 4 110908966 110908966 C T EGF Missense_Mutation p.A853V 0.23 tolerated(0.12) benign(0.018) TCGA-AD-6964-01 4 111397707 111397707 G A ENPEP Missense_Mutation p.S46N 0.11 tolerated(0.25) benign(0.002) TCGA-AD-6964-01 4 113540067 113540067 C T C4orf21 Silent p.T377T 0.28 TCGA-AD-6964-01 4 114277950 114277950 A G ANK2 Missense_Mutation p.T2726A 0.18 benign(0.001) TCGA-AD-6964-01 4 119606699 119606699 C A METTL14 Missense_Mutation p.R4S 0.28 tolerated_low_confidence(0.1) unknown(0) TCGA-AD-6964-01 4 124324089 124324090 - T SPRY1 3'UTR 0.20 TCGA-AD-6964-01 4 1245402 1245402 T - CTBP1 5'Flank 0.12 TCGA-AD-6964-01 4 126240169 126240169 C T FAT4 Missense_Mutation p.A868V 0.13 probably_damaging(0.999) TCGA-AD-6964-01 4 126371343 126371343 A G FAT4 Missense_Mutation p.T3058A 0.09 benign(0.101) TCGA-AD-6964-01 4 13338330 13338330 C T HSP90AB2P RNA 0.24 TCGA-AD-6964-01 4 138450866 138450866 G A PCDH18 Missense_Mutation p.R793W 0.07 deleterious(0) possibly_damaging(0.776) TCGA-AD-6964-01 4 138451499 138451499 G A PCDH18 Missense_Mutation p.R582C 0.26 tolerated(0.17) possibly_damaging(0.556) TCGA-AD-6964-01 4 143094848 143094848 A G INPP4B Silent p.L432L 0.27 TCGA-AD-6964-01 4 148605058 148605058 C A PRMT10 Silent p.R27R 0.16 TCGA-AD-6964-01 4 153268222 153268222 T A FBXW7 Missense_Mutation p.T196S 0.12 tolerated(0.44) benign(0.002) TCGA-AD-6964-01 4 153864280 153864280 T C FHDC1 Missense_Mutation p.F24S 0.24 deleterious(0) benign(0.22) TCGA-AD-6964-01 4 153864627 153864627 C T FHDC1 Nonsense_Mutation p.Q140* 0.19 TCGA-AD-6964-01 4 153895918 153895919 - G FHDC1 Frame_Shift_Ins p.A494Gfs*8 0.21 TCGA-AD-6964-01 4 155156713 155156713 T C DCHS2 Missense_Mutation p.K2576E 0.16 tolerated(0.08) benign(0.063) TCGA-AD-6964-01 4 155156889 155156889 C - DCHS2 Frame_Shift_Del p.C2517Sfs*5 0.10 TCGA-AD-6964-01 4 155250707 155250707 G - DCHS2 Frame_Shift_Del p.Q841Sfs*10 0.20 TCGA-AD-6964-01 4 155505786 155505786 G A FGA Silent p.G697G 0.07 TCGA-AD-6964-01 4 16025966 16025966 A C PROM1 Missense_Mutation p.L216V 0.09 tolerated(0.44) benign(0.163) TCGA-AD-6964-01 4 169209432 169209432 A G DDX60 Missense_Mutation p.I359T 0.09 deleterious(0.04) benign(0.015) TCGA-AD-6964-01 4 169340523 169340523 A G DDX60L Missense_Mutation p.F847S 0.16 deleterious(0) probably_damaging(0.93) TCGA-AD-6964-01 4 1705383 1705383 T G SLBP Missense_Mutation p.D74A 0.13 deleterious(0) probably_damaging(0.993) TCGA-AD-6964-01 4 17503361 17503361 A G QDPR Silent p.A139A 0.11 TCGA-AD-6964-01 4 177067311 177067311 G A WDR17 Splice_Site p.X589_splice 0.21 TCGA-AD-6964-01 4 1795767 1795767 G A FGFR3 Missense_Mutation p.A36T 0.18 tolerated_low_confidence(0.43) benign(0.005) TCGA-AD-6964-01 4 183721226 183721226 C T TENM3 Missense_Mutation p.R2608C 0.25 deleterious(0) possibly_damaging(0.876) TCGA-AD-6964-01 4 184241706 184241706 T C CLDN22 5'UTR 0.12 TCGA-AD-6964-01 4 184930978 184930978 G T STOX2 Silent p.R329R 0.12 TCGA-AD-6964-01 4 185650180 185650180 G T CENPU Missense_Mutation p.Q36K 0.09 tolerated(0.34) benign(0.231) TCGA-AD-6964-01 4 186066261 186066261 G A SLC25A4 Missense_Mutation p.R152H 0.13 deleterious(0) probably_damaging(0.993) TCGA-AD-6964-01 4 186545274 186545274 T C SORBS2 Missense_Mutation p.N533D 0.14 tolerated(0.24) benign(0.158) TCGA-AD-6964-01 4 186598563 186598564 - T SORBS2 Intron 0.18 TCGA-AD-6964-01 4 187584714 187584714 G T FAT1 Missense_Mutation p.L1107I 0.36 probably_damaging(0.999) TCGA-AD-6964-01 4 189012979 189012979 C T TRIML2 Missense_Mutation p.D238N 0.23 deleterious(0.02) possibly_damaging(0.452) TCGA-AD-6964-01 4 1980380 1980380 C A WHSC1 Missense_Mutation p.P1281H 0.14 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 4 25153615 25153615 C T SEPSECS Silent p.V257V 0.26 TCGA-AD-6964-01 4 2695498 2695498 G A FAM193A Missense_Mutation p.A706T 0.12 deleterious(0.03) benign(0.306) TCGA-AD-6964-01 4 3221909 3221909 G A HTT Missense_Mutation p.V2415M 0.20 probably_damaging(0.999) TCGA-AD-6964-01 4 36231003 36231003 T A ARAP2 Nonsense_Mutation p.K36* 0.11 TCGA-AD-6964-01 4 38117522 38117522 A C TBC1D1 Missense_Mutation p.M917L 0.22 tolerated(0.1) benign(0.348) TCGA-AD-6964-01 4 39291611 39291611 G A RFC1 Missense_Mutation p.P1074S 0.07 tolerated(0.09) possibly_damaging(0.883) TCGA-AD-6964-01 4 40440030 40440030 G A RBM47 Missense_Mutation p.A294V 0.23 deleterious(0.01) possibly_damaging(0.747) TCGA-AD-6964-01 4 40818128 40818128 G A APBB2 Missense_Mutation p.P754L 0.11 tolerated(0.24) probably_damaging(0.993) TCGA-AD-6964-01 4 41984609 41984609 T C DCAF4L1 Missense_Mutation p.L267P 0.21 deleterious(0) probably_damaging(0.987) TCGA-AD-6964-01 4 4199013 4199013 C A OTOP1 Missense_Mutation p.Q516H 0.11 tolerated(0.06) benign(0.401) TCGA-AD-6964-01 4 46967106 46967106 C T GABRA4 Missense_Mutation p.A339T 0.11 tolerated(0.75) probably_damaging(1) TCGA-AD-6964-01 4 48597607 48597607 C A FRYL Missense_Mutation p.Q416H 0.10 deleterious(0) possibly_damaging(0.793) TCGA-AD-6964-01 4 48854024 48854024 T - OCIAD1 Intron 0.17 TCGA-AD-6964-01 4 533128 533128 A G PIGG Silent p.A974A 0.09 TCGA-AD-6964-01 4 54966805 54966805 C T GSX2 Silent p.A98A 0.20 TCGA-AD-6964-01 4 56322445 56322445 G A CLOCK Missense_Mutation p.P272L 0.12 deleterious(0) possibly_damaging(0.694) TCGA-AD-6964-01 4 57797732 57797732 A C REST Missense_Mutation p.D903A 0.15 tolerated(0.07) benign(0.004) TCGA-AD-6964-01 4 6037728 6037728 G A JAKMIP1 Missense_Mutation p.A761V 0.27 deleterious(0.02) benign(0.281) TCGA-AD-6964-01 4 62812695 62812695 C T LPHN3 Missense_Mutation p.A760V 0.10 deleterious(0.01) possibly_damaging(0.803) TCGA-AD-6964-01 4 62936471 62936471 C T LPHN3 Missense_Mutation p.P1419S 0.25 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AD-6964-01 4 6302420 6302420 A G WFS1 Missense_Mutation p.K300E 0.20 deleterious(0.03) probably_damaging(0.987) TCGA-AD-6964-01 4 678571 678571 G - MFSD7 Frame_Shift_Del p.T221Pfs*38 0.14 TCGA-AD-6964-01 4 68544158 68544158 T C UBA6 Missense_Mutation p.R118G 0.16 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 4 6925426 6925426 G A TBC1D14 Missense_Mutation p.A104T 0.31 tolerated_low_confidence(0.1) benign(0.035) TCGA-AD-6964-01 4 69520848 69520848 C G UGT2B15 Missense_Mutation p.R353P 0.05 deleterious(0) probably_damaging(0.955) TCGA-AD-6964-01 4 69817282 69817282 T C UGT2A3 Missense_Mutation p.Y66C 0.10 tolerated(0.14) probably_damaging(0.926) TCGA-AD-6964-01 4 71471988 71471988 C T AMBN Silent p.N295N 0.25 TCGA-AD-6964-01 4 77662395 77662395 C T SHROOM3 Silent p.P1023P 0.27 TCGA-AD-6964-01 4 84216651 84216651 A G HPSE Missense_Mutation p.V493A 0.31 deleterious(0) possibly_damaging(0.899) TCGA-AD-6964-01 4 85672858 85672858 A G WDFY3 Silent p.L1917L 0.17 TCGA-AD-6964-01 4 85676453 85676453 A - WDFY3 Frame_Shift_Del p.L1842Yfs*10 0.19 TCGA-AD-6964-01 4 95503873 95503873 C A PDLIM5 Intron 0.19 TCGA-AD-6964-01 4 96761499 96761499 G A PDHA2 Missense_Mutation p.M66I 0.10 deleterious(0.02) benign(0.199) TCGA-AD-6964-01 4 9785349 9785349 G C DRD5 3'UTR 0.17 TCGA-AD-6964-01 4 9785364 9785381 AATGATACTTGGTCCTTA TGATACTTGGTCCTT DRD5 3'UTR 0.16 TCGA-AD-6964-01 4 9785381 9785381 A - DRD5 3'UTR 0.12 TCGA-AD-6964-01 4 9785421 9785421 G T DRD5 3'UTR 0.10 TCGA-AD-6964-01 4 99964420 99964420 C T METAP1 Silent p.C179C 0.19 TCGA-AD-6964-01 5 114557642 114557643 - A PGGT1B Frame_Shift_Ins p.S241Ffs*25 0.26 TCGA-AD-6964-01 5 118788370 118788370 G A HSD17B4 5'UTR 0.33 TCGA-AD-6964-01 5 121362805 121362805 T A SRFBP1 Missense_Mutation p.I425N 0.15 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 5 128351677 128351677 G A SLC27A6 Missense_Mutation p.V357M 0.10 tolerated(0.39) benign(0.019) TCGA-AD-6964-01 5 131302122 131302122 C T ACSL6 Missense_Mutation p.G567E 0.32 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 5 131307292 131307292 G A ACSL6 Missense_Mutation p.P462L 0.20 deleterious(0) possibly_damaging(0.856) TCGA-AD-6964-01 5 132270258 132270259 - T AFF4 Frame_Shift_Ins p.G167Rfs*27 0.22 TCGA-AD-6964-01 5 133948388 133948388 A G SAR1B Silent p.H79H 0.12 TCGA-AD-6964-01 5 13776763 13776763 G A DNAH5 Missense_Mutation p.A3053V 0.23 benign(0) TCGA-AD-6964-01 5 139574067 139574067 C A CYSTM1 Missense_Mutation p.P6H 0.26 deleterious_low_confidence(0) unknown(0) TCGA-AD-6964-01 5 139908474 139908474 C T ANKHD1 Silent p.S1981S 0.09 TCGA-AD-6964-01 5 140056953 140056953 G A HARS Missense_Mutation p.P261L 0.16 deleterious(0.03) benign(0.081) TCGA-AD-6964-01 5 140166823 140166823 C T PCDHA1 Silent p.Y316Y 0.27 TCGA-AD-6964-01 5 140167594 140167594 T C PCDHA1 Silent p.T573T 0.06 TCGA-AD-6964-01 5 140180866 140180866 C T PCDHA3 Silent p.S28S 0.18 TCGA-AD-6964-01 5 140235815 140235815 G A PCDHA10 Missense_Mutation p.R61H 0.25 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-AD-6964-01 5 140263405 140263405 T C PCDHA13 Missense_Mutation p.Y518H 0.18 deleterious_low_confidence(0.03) benign(0.049) TCGA-AD-6964-01 5 140263705 140263705 G A PCDHA13 Missense_Mutation p.A618T 0.36 tolerated_low_confidence(0.09) benign(0.012) TCGA-AD-6964-01 5 140476340 140476340 G T PCDHB2 Missense_Mutation p.A656S 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.517) TCGA-AD-6964-01 5 140502965 140502965 A G PCDHB4 Missense_Mutation p.N462S 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-AD-6964-01 5 140559173 140559173 C T PCDHB8 Silent p.L520L 0.09 TCGA-AD-6964-01 5 140565360 140565360 A C PCDHB16 3'UTR 0.11 TCGA-AD-6964-01 5 140741361 140741361 C T PCDHGB2 Silent p.G553G 0.09 TCGA-AD-6964-01 5 140767552 140767552 G A PCDHGB4 Missense_Mutation p.R34H 0.20 tolerated(0.22) benign(0.077) TCGA-AD-6964-01 5 140788792 140788792 C T PCDHGB6 Silent p.N341N 0.20 TCGA-AD-6964-01 5 140793014 140793014 C T PCDHGA10 Missense_Mutation p.A91V 0.23 deleterious_low_confidence(0.02) benign(0.428) TCGA-AD-6964-01 5 140905877 140905877 C T DIAPH1 Missense_Mutation p.R1142Q 0.18 possibly_damaging(0.771) TCGA-AD-6964-01 5 142779719 142779719 G A NR3C1 Missense_Mutation p.A229V 0.28 tolerated(0.09) benign(0.013) TCGA-AD-6964-01 5 14358340 14358340 C T TRIO Silent p.A700A 0.25 TCGA-AD-6964-01 5 145202692 145202692 G - PRELID2 Frame_Shift_Del p.N28Tfs*10 0.20 TCGA-AD-6964-01 5 145838668 145838668 G A TCERG1 Silent p.Q220Q 0.26 TCGA-AD-6964-01 5 147805223 147805223 A T FBXO38 Missense_Mutation p.E626V 0.30 tolerated_low_confidence(0.13) probably_damaging(0.99) TCGA-AD-6964-01 5 148407355 148407355 C T SH3TC2 Missense_Mutation p.G647D 0.15 deleterious(0.04) possibly_damaging(0.885) TCGA-AD-6964-01 5 149782836 149782836 G A CD74 Missense_Mutation p.A222V 0.17 tolerated(0.06) benign(0.014) TCGA-AD-6964-01 5 150028823 150028823 C A SYNPO Missense_Mutation p.P573H 0.12 deleterious(0) probably_damaging(0.946) TCGA-AD-6964-01 5 1501715 1501715 C T LPCAT1 Missense_Mutation p.A47T 0.31 tolerated(0.18) benign(0.035) TCGA-AD-6964-01 5 153181988 153181988 G A GRIA1 Missense_Mutation p.A830T 0.11 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 5 156903 156903 C T PLEKHG4B Silent p.A432A 0.09 TCGA-AD-6964-01 5 156968 156968 G A PLEKHG4B Missense_Mutation p.R454H 0.25 tolerated(0.57) possibly_damaging(0.769) TCGA-AD-6964-01 5 158621762 158621763 - A RNF145 Frame_Shift_Ins p.L115Ffs*20 0.17 TCGA-AD-6964-01 5 159519341 159519341 A G PWWP2A 3'UTR 0.16 TCGA-AD-6964-01 5 16465384 16465384 C T ZNF622 Missense_Mutation p.A131T 0.18 deleterious(0.01) probably_damaging(1) TCGA-AD-6964-01 5 167303071 167303071 A G TENM2 Missense_Mutation p.S195G 0.11 tolerated_low_confidence(0.33) benign(0.158) TCGA-AD-6964-01 5 167674545 167674545 T C TENM2 Missense_Mutation p.Y2201H 0.11 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 5 170626734 170626734 T C RANBP17 Missense_Mutation p.V700A 0.12 deleterious(0.01) probably_damaging(0.97) TCGA-AD-6964-01 5 170736697 170736697 G A TLX3 Missense_Mutation p.A110T 0.13 tolerated(0.46) benign(0.003) TCGA-AD-6964-01 5 171777375 171777375 G C SH3PXD2B Missense_Mutation p.A335G 0.19 tolerated(0.27) benign(0.001) TCGA-AD-6964-01 5 173531252 173531252 G A NSG2 Missense_Mutation p.A79T 0.18 tolerated(0.43) possibly_damaging(0.555) TCGA-AD-6964-01 5 175530774 175530774 C T FAM153B Missense_Mutation p.P174S 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.644) TCGA-AD-6964-01 5 176520342 176520342 G A FGFR4 Intron 0.16 TCGA-AD-6964-01 5 176524321 176524321 G A FGFR4 Missense_Mutation p.A728T 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-AD-6964-01 5 176738408 176738408 G - MXD3 Frame_Shift_Del p.Q50Rfs*24 0.22 TCGA-AD-6964-01 5 176868313 176868313 T - GRK6 Intron 0.31 TCGA-AD-6964-01 5 177019237 177019237 C T TMED9 Silent p.L8L 0.27 TCGA-AD-6964-01 5 177684570 177684570 T C COL23A1 Splice_Site p.X244_splice 0.22 TCGA-AD-6964-01 5 178562943 178562943 G A ADAMTS2 Silent p.D684D 0.22 TCGA-AD-6964-01 5 180047299 180047299 C T FLT4 Missense_Mutation p.A806T 0.23 deleterious(0.01) possibly_damaging(0.907) TCGA-AD-6964-01 5 192413 192413 C - LRRC14B Frame_Shift_Del p.T256Pfs*36 0.15 TCGA-AD-6964-01 5 31305311 31305311 A G CDH6 Missense_Mutation p.T344A 0.10 deleterious(0.02) benign(0.005) TCGA-AD-6964-01 5 31421395 31421395 T C DROSHA Missense_Mutation p.H1170R 0.26 deleterious(0.01) possibly_damaging(0.704) TCGA-AD-6964-01 5 32791083 32791083 C T NPR3 3'UTR 0.12 TCGA-AD-6964-01 5 35646878 35646878 A - SPEF2 Frame_Shift_Del p.M234* 0.11 TCGA-AD-6964-01 5 35965688 35965688 A G UGT3A1 Missense_Mutation p.W215R 0.09 tolerated(0.48) benign(0.019) TCGA-AD-6964-01 5 35965919 35965919 T C UGT3A1 Missense_Mutation p.N138D 0.09 tolerated(0.12) benign(0.232) TCGA-AD-6964-01 5 36108666 36108666 A T LMBRD2 Missense_Mutation p.S623T 0.06 tolerated(0.84) benign(0.002) TCGA-AD-6964-01 5 37226792 37226792 A G C5orf42 Silent p.C635C 0.08 TCGA-AD-6964-01 5 37305221 37305221 G T NUP155 Missense_Mutation p.P999T 0.09 deleterious(0.01) probably_damaging(1) TCGA-AD-6964-01 5 38482038 38482038 C T LIFR Missense_Mutation p.A985T 0.12 tolerated(0.11) benign(0.015) TCGA-AD-6964-01 5 39108350 39108350 T C FYB Missense_Mutation p.Y827C 0.10 deleterious(0) possibly_damaging(0.868) TCGA-AD-6964-01 5 39364588 39364588 C T C9 5'UTR 0.48 TCGA-AD-6964-01 5 40999881 40999881 C A MROH2B Missense_Mutation p.A1495S 0.07 tolerated(0.13) benign(0.078) TCGA-AD-6964-01 5 41510641 41510641 C T PLCXD3 5'UTR 0.19 TCGA-AD-6964-01 5 44809317 44809317 A G MRPS30 Missense_Mutation p.K85E 0.09 deleterious(0.01) possibly_damaging(0.742) TCGA-AD-6964-01 5 50137881 50137881 T C PARP8 Silent p.G848G 0.26 TCGA-AD-6964-01 5 61847143 61847143 G A IPO11 Missense_Mutation p.A854T 0.22 tolerated(0.07) possibly_damaging(0.818) TCGA-AD-6964-01 5 6378580 6378580 T A MED10 Missense_Mutation p.D6V 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-AD-6964-01 5 64100133 64100134 - A CWC27 Frame_Shift_Ins p.L289Ifs*10 0.20 TCGA-AD-6964-01 5 64867917 64867917 A G PPWD1 Missense_Mutation p.K258R 0.09 tolerated(0.12) benign(0.001) TCGA-AD-6964-01 5 65374370 65374370 A - ERBB2IP 3'UTR 0.24 TCGA-AD-6964-01 5 6609993 6609993 A - NSUN2 Frame_Shift_Del p.F423Lfs*6 0.18 TCGA-AD-6964-01 5 67592116 67592116 C T PIK3R1 Silent p.G644G 0.27 TCGA-AD-6964-01 5 68588101 68588101 T - CCDC125 Frame_Shift_Del p.N338Mfs*7 0.16 TCGA-AD-6964-01 5 70805777 70805777 T A BDP1 Missense_Mutation p.V953E 0.08 tolerated(0.95) benign(0.001) TCGA-AD-6964-01 5 75621230 75621230 C T SV2C Missense_Mutation p.A681V 0.31 deleterious(0) probably_damaging(0.968) TCGA-AD-6964-01 5 79025743 79025743 A G CMYA5 Silent p.T385T 0.23 TCGA-AD-6964-01 5 81574208 81574208 G A RPS23 5'UTR 0.13 TCGA-AD-6964-01 5 82948433 82948434 - T HAPLN1 Frame_Shift_Ins p.T104Nfs*8 0.14 TCGA-AD-6964-01 5 9052074 9052074 T C SEMA5A Missense_Mutation p.Q919R 0.16 tolerated(0.53) benign(0.287) TCGA-AD-6964-01 5 9190428 9190428 G A SEMA5A Silent p.D408D 0.20 TCGA-AD-6964-01 5 93077185 93077185 C T POU5F2 Missense_Mutation p.V29I 0.27 tolerated(0.17) benign(0.097) TCGA-AD-6964-01 5 93859758 93859761 TTGT - KIAA0825 Frame_Shift_Del p.K58Nfs*17 0.19 TCGA-AD-6964-01 5 95757599 95757599 G A PCSK1 Missense_Mutation p.P202L 0.12 tolerated(0.77) benign(0.006) TCGA-AD-6964-01 6 102516272 102516272 C T GRIK2 Silent p.C871C 0.25 TCGA-AD-6964-01 6 10529287 10529287 C T GCNT2 Missense_Mutation p.A48V 0.20 tolerated(1) benign(0.002) TCGA-AD-6964-01 6 107390028 107390028 C T BEND3 Silent p.P789P 0.21 TCGA-AD-6964-01 6 108093490 108093490 G T SCML4 Silent p.P14P 0.30 TCGA-AD-6964-01 6 108279192 108279192 A G SEC63 Missense_Mutation p.Y8H 0.23 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 6 10874796 10874796 C T GCM2 Missense_Mutation p.S318N 0.10 tolerated(0.33) benign(0.003) TCGA-AD-6964-01 6 109764938 109764938 G T SMPD2 Missense_Mutation p.A368S 0.27 tolerated(0.08) benign(0.035) TCGA-AD-6964-01 6 109993319 109993319 A G AK9 Missense_Mutation p.M78T 0.25 tolerated(0.16) benign(0.069) TCGA-AD-6964-01 6 110534296 110534296 G A CDC40 Missense_Mutation p.S292N 0.18 tolerated(0.19) benign(0.247) TCGA-AD-6964-01 6 110763698 110763698 A G SLC22A16 Missense_Mutation p.M311T 0.31 deleterious(0) possibly_damaging(0.513) TCGA-AD-6964-01 6 111698971 111698971 A G REV3L Silent p.S510S 0.09 TCGA-AD-6964-01 6 112453977 112453977 A G LAMA4 Missense_Mutation p.L1271S 0.31 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 6 116559436 116559436 A G NT5DC1 Silent p.E336E 0.13 TCGA-AD-6964-01 6 117681120 117681120 A - ROS1 Frame_Shift_Del p.L1167* 0.17 TCGA-AD-6964-01 6 117997107 117997107 C T NUS1 Missense_Mutation p.R92C 0.19 tolerated(0.08) benign(0.026) TCGA-AD-6964-01 6 125550342 125550342 G A TPD52L1 Missense_Mutation p.G72S 0.16 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 6 127608074 127608074 T C RNF146 Missense_Mutation p.W106R 0.24 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 6 127797118 127797118 C T SOGA3 Missense_Mutation p.G685S 0.23 tolerated(0.28) benign(0.153) TCGA-AD-6964-01 6 129641771 129641771 C T LAMA2 Missense_Mutation p.P1383S 0.10 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 6 131996291 131996291 A - ENPP3 Frame_Shift_Del p.N279Mfs*25 0.22 TCGA-AD-6964-01 6 132031241 132031241 T C CTAGE9 Missense_Mutation p.N306S 0.10 tolerated(0.13) benign(0.002) TCGA-AD-6964-01 6 132859733 132859733 A T TAAR9 Missense_Mutation p.D102V 0.10 deleterious(0.01) benign(0.175) TCGA-AD-6964-01 6 135318663 135318663 G A HBS1L Missense_Mutation p.A224V 0.23 tolerated(0.47) benign(0.001) TCGA-AD-6964-01 6 13592091 13592091 G A SIRT5 Missense_Mutation p.R147H 0.29 tolerated(0.14) benign(0.009) TCGA-AD-6964-01 6 136512924 136512924 C T PDE7B Silent p.H433H 0.24 TCGA-AD-6964-01 6 136960710 136960710 G A MAP3K5 Silent p.I635I 0.08 TCGA-AD-6964-01 6 138613006 138613006 C - KIAA1244 Frame_Shift_Del p.E1064Sfs*10 0.26 TCGA-AD-6964-01 6 144178913 144178913 C T LTV1 Silent p.S188S 0.23 TCGA-AD-6964-01 6 150063668 150063668 G T NUP43 Nonsense_Mutation p.Y120* 0.18 TCGA-AD-6964-01 6 151673000 151673000 C - AKAP12 Frame_Shift_Del p.P1160Lfs*18 0.25 TCGA-AD-6964-01 6 153332849 153332849 C T RGS17 Missense_Mutation p.D165N 0.18 deleterious(0.05) benign(0.009) TCGA-AD-6964-01 6 155153514 155153514 C A SCAF8 Missense_Mutation p.A934E 0.43 deleterious_low_confidence(0.01) benign(0.4) TCGA-AD-6964-01 6 155597257 155597257 C T CLDN20 Missense_Mutation p.S135L 0.10 deleterious(0) benign(0.003) TCGA-AD-6964-01 6 157522287 157522287 A G ARID1B Missense_Mutation p.Q1520R 0.10 probably_damaging(0.974) TCGA-AD-6964-01 6 157527802 157527802 C T ARID1B Missense_Mutation p.R1843C 0.27 probably_damaging(0.959) TCGA-AD-6964-01 6 158483176 158483176 G - SYNJ2 Frame_Shift_Del p.E371Rfs*14 0.14 TCGA-AD-6964-01 6 158613336 158613336 A - GTF2H5 3'UTR 0.33 TCGA-AD-6964-01 6 160468897 160468897 T A IGF2R Missense_Mutation p.V768E 0.21 deleterious(0.01) possibly_damaging(0.776) TCGA-AD-6964-01 6 160543103 160543103 C T SLC22A1 Missense_Mutation p.P46S 0.25 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 6 160906844 160906844 T C LPAL2 Intron 0.16 TCGA-AD-6964-01 6 161494625 161494625 A T MAP3K4 Missense_Mutation p.D693V 0.09 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 6 161557582 161557582 A C AGPAT4 Missense_Mutation p.L376R 0.18 tolerated_low_confidence(0.58) benign(0) TCGA-AD-6964-01 6 163987590 163987590 T C QKI Intron 0.17 TCGA-AD-6964-01 6 163987631 163987631 T C QKI Intron 0.14 TCGA-AD-6964-01 6 166826370 166826370 C T RPS6KA2 Silent p.A702A 0.17 TCGA-AD-6964-01 6 169641947 169641947 T C THBS2 Silent p.E267E 0.16 TCGA-AD-6964-01 6 17629253 17629253 T G NUP153 Silent p.S1059S 0.12 TCGA-AD-6964-01 6 18201848 18201848 G A KDM1B Intron 0.23 TCGA-AD-6964-01 6 25850144 25850144 G A SLC17A3 Missense_Mutation p.P387L 0.15 tolerated(0.83) benign(0.074) TCGA-AD-6964-01 6 26124022 26124022 A G HIST1H2BC Silent p.S37S 0.27 TCGA-AD-6964-01 6 26271171 26271171 T A HIST1H3G 3'UTR 0.16 TCGA-AD-6964-01 6 26406282 26406282 C T BTN3A1 Silent p.N77N 0.32 TCGA-AD-6964-01 6 26505212 26505212 G A BTN1A1 Missense_Mutation p.E163K 0.12 deleterious(0.04) benign(0.134) TCGA-AD-6964-01 6 27101045 27101045 A G HIST1H2AG Silent p.E65E 0.08 TCGA-AD-6964-01 6 29910345 29910346 - C HLA-A Frame_Shift_Ins p.R7Pfs*92 0.15 TCGA-AD-6964-01 6 30309622 30309622 C T TRIM39 Silent p.C381C 0.23 TCGA-AD-6964-01 6 30955106 30955106 G A MUC21 Missense_Mutation p.S385N 0.29 deleterious(0.02) unknown(0) TCGA-AD-6964-01 6 31127312 31127312 C - TCF19 Frame_Shift_Del p.A25Pfs*72 0.23 TCGA-AD-6964-01 6 31239042 31239042 C T HLA-C Missense_Mutation p.D143N 0.13 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-AD-6964-01 6 31430967 31430967 C T HCP5 RNA 0.09 TCGA-AD-6964-01 6 31615400 31615400 G A BAG6 Silent p.G258G 0.22 TCGA-AD-6964-01 6 31659420 31659420 C T ABHD16A Missense_Mutation p.G260D 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-AD-6964-01 6 31759677 31759677 G A VARS Nonsense_Mutation p.Q315* 0.20 TCGA-AD-6964-01 6 31795828 31795828 G A HSPA1B Missense_Mutation p.G34D 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-AD-6964-01 6 31852462 31852462 G - EHMT2 Frame_Shift_Del p.L855Cfs*36 0.19 TCGA-AD-6964-01 6 31917262 31917263 AA - CFB Frame_Shift_Del p.K948Rfs*3 0.17 TCGA-AD-6964-01 6 32083641 32083641 G A ATF6B Missense_Mutation p.P663S 0.22 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 6 32125680 32125680 T C PPT2 Missense_Mutation p.V236A 0.11 deleterious(0) probably_damaging(0.968) TCGA-AD-6964-01 6 33269406 33269406 A G TAPBP 3'Flank 0.20 TCGA-AD-6964-01 6 33694511 33694511 G A IP6K3 Missense_Mutation p.H196Y 0.16 tolerated(0.84) benign(0.091) TCGA-AD-6964-01 6 34212659 34212659 T C HMGA1 Nonstop_Mutation p.*108Rext*66 0.09 TCGA-AD-6964-01 6 35287441 35287441 A G DEF6 Silent p.E452E 0.14 TCGA-AD-6964-01 6 35745647 35745647 G A CLPSL2 Intron 0.09 TCGA-AD-6964-01 6 38831750 38831750 G A DNAH8 Missense_Mutation p.A1921T 0.11 possibly_damaging(0.869) TCGA-AD-6964-01 6 38942300 38942300 G A DNAH8 Missense_Mutation p.V4060M 0.09 probably_damaging(1) TCGA-AD-6964-01 6 39864686 39864686 C T DAAM2 Missense_Mutation p.R814C 0.21 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 6 40400058 40400058 A G LRFN2 Silent p.C265C 0.17 TCGA-AD-6964-01 6 41250249 41250249 C T TREM1 Missense_Mutation p.R97H 0.22 tolerated(1) benign(0.001) TCGA-AD-6964-01 6 41555171 41555171 C - FOXP4 Frame_Shift_Del p.K267Rfs*100 0.23 TCGA-AD-6964-01 6 42044971 42044971 G T TAF8 Missense_Mutation p.R305M 0.14 deleterious(0.01) possibly_damaging(0.507) TCGA-AD-6964-01 6 43307426 43307426 G A ZNF318 Missense_Mutation p.P1437L 0.28 possibly_damaging(0.474) TCGA-AD-6964-01 6 43322718 43322718 G - ZNF318 Frame_Shift_Del p.P785Lfs*37 0.19 TCGA-AD-6964-01 6 43541310 43541310 G T XPO5 Missense_Mutation p.P45H 0.14 deleterious(0) probably_damaging(0.962) TCGA-AD-6964-01 6 44120356 44120356 C T TMEM63B Silent p.G621G 0.11 TCGA-AD-6964-01 6 44279937 44279937 C T AARS2 Missense_Mutation p.A103T 0.26 tolerated(0.06) possibly_damaging(0.825) TCGA-AD-6964-01 6 44397572 44397572 T C CDC5L Silent p.P672P 0.27 TCGA-AD-6964-01 6 47682381 47682381 C A GPR115 Missense_Mutation p.A467D 0.19 tolerated(0.48) benign(0.009) TCGA-AD-6964-01 6 50683037 50683037 C T TFAP2D Missense_Mutation p.P83L 0.25 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-AD-6964-01 6 5404849 5404850 - AC FARS2 Frame_Shift_Ins p.M233Pfs*5 0.09 TCGA-AD-6964-01 6 56342213 56342213 G A DST Missense_Mutation p.A4579V 0.09 possibly_damaging(0.452) TCGA-AD-6964-01 6 56707970 56707970 A T RP11-472M19.2 5'Flank 0.25 TCGA-AD-6964-01 6 66204931 66204931 G A EYS Missense_Mutation p.L125F 0.22 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-AD-6964-01 6 70589511 70589511 C T COL19A1 Missense_Mutation p.L18F 0.10 tolerated(0.22) unknown(0) TCGA-AD-6964-01 6 70637830 70637830 A G COL19A1 Missense_Mutation p.E99G 0.15 deleterious(0) unknown(0) TCGA-AD-6964-01 6 70639566 70639566 C T COL19A1 Nonsense_Mutation p.R214* 0.31 TCGA-AD-6964-01 6 72952102 72952102 A G RIMS1 Silent p.S681S 0.11 TCGA-AD-6964-01 6 75950900 75950901 - T COX7A2 Frame_Shift_Ins p.L66Tfs*6 0.17 TCGA-AD-6964-01 6 76568632 76568632 T G MYO6 Missense_Mutation p.H465Q 0.15 tolerated(0.29) unknown(0) TCGA-AD-6964-01 6 76712682 76712682 A T IMPG1 Missense_Mutation p.V415D 0.19 tolerated(0.32) benign(0.001) TCGA-AD-6964-01 6 79665401 79665401 T C PHIP Splice_Site p.X1261_splice 0.11 TCGA-AD-6964-01 6 83889601 83889601 G A PGM3 Silent p.G319G 0.14 TCGA-AD-6964-01 6 84895045 84895045 G A KIAA1009 Missense_Mutation p.A508V 0.25 tolerated(0.06) benign(0.048) TCGA-AD-6964-01 6 85446436 85446436 C T TBX18 Silent p.L597L 0.23 TCGA-AD-6964-01 6 85472262 85472262 C T TBX18 Missense_Mutation p.R166K 0.19 deleterious(0) probably_damaging(0.965) TCGA-AD-6964-01 6 87967392 87967392 C T ZNF292 Missense_Mutation p.R1349W 0.25 deleterious(0.04) benign(0.032) TCGA-AD-6964-01 6 90340363 90340363 G A ANKRD6 Silent p.Q608Q 0.14 TCGA-AD-6964-01 6 93953209 93953209 T A EPHA7 Missense_Mutation p.M978L 0.14 tolerated(1) benign(0.003) TCGA-AD-6964-01 6 96655534 96655534 G T FUT9 3'UTR 0.17 TCGA-AD-6964-01 6 99286413 99286413 T - POU3F2 3'UTR 0.13 TCGA-AD-6964-01 7 101188735 101188735 G A COL26A1 Missense_Mutation p.A274T 0.19 tolerated(0.47) benign(0.054) TCGA-AD-6964-01 7 103124224 103124224 G - RELN Frame_Shift_Del p.H3353Tfs*46 0.20 TCGA-AD-6964-01 7 105635233 105635233 T A CDHR3 Missense_Mutation p.S184T 0.12 tolerated(0.17) probably_damaging(0.998) TCGA-AD-6964-01 7 105738152 105738152 C T SYPL1 Missense_Mutation p.R147H 0.16 tolerated(0.15) benign(0.06) TCGA-AD-6964-01 7 111368368 111368368 G A DOCK4 Missense_Mutation p.R1955W 0.24 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-AD-6964-01 7 112127036 112127037 - T LSMEM1 Frame_Shift_Ins p.V65Cfs*30 0.21 TCGA-AD-6964-01 7 112723783 112723783 C T GPR85 Missense_Mutation p.A332T 0.33 tolerated(0.07) possibly_damaging(0.673) TCGA-AD-6964-01 7 117431938 117431938 G A CTTNBP2 Missense_Mutation p.H438Y 0.10 tolerated(0.07) benign(0.005) TCGA-AD-6964-01 7 122303552 122303552 T G CADPS2 Missense_Mutation p.E175D 0.15 tolerated(0.12) benign(0.007) TCGA-AD-6964-01 7 128525272 128525272 G - KCP RNA 0.32 TCGA-AD-6964-01 7 131865460 131865460 C - PLXNA4 Frame_Shift_Del p.G1175Afs*3 0.25 TCGA-AD-6964-01 7 131870139 131870139 G A PLXNA4 Missense_Mutation p.A1026V 0.22 deleterious(0) possibly_damaging(0.897) TCGA-AD-6964-01 7 133979400 133979400 G A SLC35B4 3'UTR 0.31 TCGA-AD-6964-01 7 134617944 134617944 G A CALD1 Missense_Mutation p.A142T 0.23 tolerated(0.26) unknown(0) TCGA-AD-6964-01 7 135047678 135047678 G T CNOT4 Missense_Mutation p.P701T 0.10 tolerated_low_confidence(0.07) benign(0.001) TCGA-AD-6964-01 7 137304603 137304603 C T DGKI Silent p.P320P 0.16 TCGA-AD-6964-01 7 139706955 139706955 C T TBXAS1 Missense_Mutation p.T447M 0.30 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 7 139829300 139829300 A G KDM7A Silent p.R184R 0.23 TCGA-AD-6964-01 7 141479159 141479159 G A TAS2R4 Missense_Mutation p.A291T 0.20 tolerated(0.3) probably_damaging(0.953) TCGA-AD-6964-01 7 141734143 141734143 A T MGAM Missense_Mutation p.N584I 0.26 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 7 142564301 142564301 C T EPHB6 Missense_Mutation p.P509S 0.19 tolerated(0.82) possibly_damaging(0.654) TCGA-AD-6964-01 7 143027904 143027904 C T CLCN1 Missense_Mutation p.A298V 0.26 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 7 144101755 144101755 G A NOBOX Missense_Mutation p.P35L 0.23 deleterious_low_confidence(0.01) benign(0.005) TCGA-AD-6964-01 7 147259261 147259261 A G CNTNAP2 Silent p.K603K 0.07 TCGA-AD-6964-01 7 148515109 148515109 C T EZH2 Missense_Mutation p.S367N 0.28 tolerated(0.22) benign(0.002) TCGA-AD-6964-01 7 148768381 148768381 T C ZNF786 Missense_Mutation p.M495V 0.26 tolerated(0.46) benign(0.113) TCGA-AD-6964-01 7 148802285 148802285 C T ZNF425 Silent p.S226S 0.29 TCGA-AD-6964-01 7 149557533 149557533 G A ZNF862 Silent p.A428A 0.26 TCGA-AD-6964-01 7 150324758 150324759 - G GIMAP6 3'UTR 0.30 TCGA-AD-6964-01 7 150654408 150654408 T C KCNH2 Missense_Mutation p.T367A 0.18 deleterious(0.03) benign(0.2) TCGA-AD-6964-01 7 150931124 150931124 G A CHPF2 Silent p.L9L 0.12 TCGA-AD-6964-01 7 1520922 1520922 G A INTS1 Intron 0.47 TCGA-AD-6964-01 7 1526995 1526995 G A INTS1 Silent p.S869S 0.20 TCGA-AD-6964-01 7 154667715 154667715 C T DPP6 Silent p.D661D 0.29 TCGA-AD-6964-01 7 154760463 154760463 C T PAXIP1 Missense_Mutation p.R483H 0.21 deleterious(0.03) unknown(0) TCGA-AD-6964-01 7 156743304 156743304 G - NOM1 Frame_Shift_Del p.E293Kfs*34 0.24 TCGA-AD-6964-01 7 156963109 156963109 T - UBE3C Frame_Shift_Del p.Y105Tfs*10 0.12 TCGA-AD-6964-01 7 16793536 16793536 G T TSPAN13 5'UTR 0.16 TCGA-AD-6964-01 7 18624914 18624914 G A HDAC9 Silent p.K11K 0.19 TCGA-AD-6964-01 7 21521560 21521560 A - SP4 Frame_Shift_Del p.K644Rfs*195 0.18 TCGA-AD-6964-01 7 2297052 2297052 G A SNX8 Missense_Mutation p.A361V 0.37 tolerated(1) benign(0.002) TCGA-AD-6964-01 7 23381702 23381702 G A IGF2BP3 Missense_Mutation p.P395L 0.08 tolerated(0.11) benign(0.004) TCGA-AD-6964-01 7 24846424 24846424 A G OSBPL3 Silent p.P805P 0.14 TCGA-AD-6964-01 7 25266578 25266578 T - NPVF Frame_Shift_Del p.N69Mfs*5 0.17 TCGA-AD-6964-01 7 26224928 26224928 G A NFE2L3 Missense_Mutation p.R537H 0.23 deleterious(0.05) possibly_damaging(0.847) TCGA-AD-6964-01 7 2946397 2946397 G A CARD11 Missense_Mutation p.P1114S 0.23 deleterious(0) possibly_damaging(0.768) TCGA-AD-6964-01 7 29923941 29923941 G A WIPF3 Silent p.A277A 0.29 TCGA-AD-6964-01 7 30054462 30054462 C T FKBP14 Silent p.V175V 0.13 TCGA-AD-6964-01 7 3991503 3991503 G - SDK1 Frame_Shift_Del p.S369Afs*15 0.22 TCGA-AD-6964-01 7 4308114 4308114 A - SDK1 3'UTR 0.18 TCGA-AD-6964-01 7 43916606 43916606 T C URGCP Missense_Mutation p.Y819C 0.11 deleterious(0.02) benign(0.015) TCGA-AD-6964-01 7 44323765 44323765 G A CAMK2B Missense_Mutation p.A42V 0.09 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-AD-6964-01 7 47341860 47341860 A G TNS3 Silent p.G1156G 0.20 TCGA-AD-6964-01 7 50169357 50169357 A G C7orf72 Silent p.A232A 0.09 TCGA-AD-6964-01 7 50444393 50444393 G A IKZF1 Missense_Mutation p.G108E 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-AD-6964-01 7 5256731 5256731 G A WIPI2 Silent p.A163A 0.16 TCGA-AD-6964-01 7 5347675 5347675 A T TNRC18 3'UTR 0.10 TCGA-AD-6964-01 7 5372297 5372297 G A TNRC18 Missense_Mutation p.R2035C 0.24 possibly_damaging(0.852) TCGA-AD-6964-01 7 54610315 54610315 A T VSTM2A 5'UTR 0.22 TCGA-AD-6964-01 7 55269028 55269028 A T EGFR Missense_Mutation p.T1032S 0.11 tolerated(0.44) probably_damaging(0.997) TCGA-AD-6964-01 7 55272966 55272966 G A EGFR Missense_Mutation p.V1097I 0.21 tolerated(0.26) benign(0.001) TCGA-AD-6964-01 7 5540723 5540723 C T FBXL18 Missense_Mutation p.A393T 0.27 tolerated(0.65) probably_damaging(0.999) TCGA-AD-6964-01 7 55750178 55750178 C A RNU6-389P 5'Flank 0.16 TCGA-AD-6964-01 7 56126354 56126354 C T CCT6A Silent p.G309G 0.17 TCGA-AD-6964-01 7 5983058 5983058 T C RSPH10B Missense_Mutation p.Y552C 0.11 deleterious(0.03) benign(0.234) TCGA-AD-6964-01 7 6063211 6063211 A G AIMP2 Silent p.V284V 0.18 TCGA-AD-6964-01 7 6086660 6086660 G A EIF2AK1 Missense_Mutation p.A171V 0.13 tolerated(0.08) possibly_damaging(0.9) TCGA-AD-6964-01 7 69364415 69364415 T A AUTS2 Missense_Mutation p.D151E 0.38 tolerated(0.29) probably_damaging(0.971) TCGA-AD-6964-01 7 70231165 70231165 G A AUTS2 Missense_Mutation p.A512T 0.13 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 7 70231245 70231245 G A AUTS2 Silent p.T538T 0.12 TCGA-AD-6964-01 7 70255219 70255219 C T AUTS2 Missense_Mutation p.P1006L 0.31 tolerated(0.12) benign(0.014) TCGA-AD-6964-01 7 72849198 72849198 C T FZD9 Silent p.A287A 0.20 TCGA-AD-6964-01 7 74103548 74103548 C A GTF2I Missense_Mutation p.A29D 0.25 deleterious(0) probably_damaging(0.988) TCGA-AD-6964-01 7 751131 751131 C T PRKAR1B Silent p.P4P 0.21 TCGA-AD-6964-01 7 77256171 77256171 T C PTPN12 Missense_Mutation p.V392A 0.21 deleterious(0) probably_damaging(0.952) TCGA-AD-6964-01 7 81355221 81355221 T C HGF Missense_Mutation p.M385V 0.07 tolerated(0.46) benign(0) TCGA-AD-6964-01 7 82584090 82584090 T C PCLO Missense_Mutation p.D2060G 0.14 unknown(0) TCGA-AD-6964-01 7 89862019 89862019 T C STEAP2 3'UTR 0.21 TCGA-AD-6964-01 7 90897491 90897491 T C FZD1 3'UTR 0.32 TCGA-AD-6964-01 7 91630484 91630484 T C AKAP9 Missense_Mutation p.I418T 0.09 benign(0.003) TCGA-AD-6964-01 7 91670134 91670134 G A AKAP9 Missense_Mutation p.M1613I 0.15 probably_damaging(0.921) TCGA-AD-6964-01 7 92129069 92129069 T C PEX1 Silent p.L889L 0.16 TCGA-AD-6964-01 7 92131268 92131268 A G PEX1 Silent p.F784F 0.22 TCGA-AD-6964-01 7 94041433 94041433 C T COL1A2 Silent p.V468V 0.10 TCGA-AD-6964-01 7 94285379 94285379 T C SGCE Missense_Mutation p.D11G 0.18 deleterious_low_confidence(0.02) benign(0.1) TCGA-AD-6964-01 7 95625304 95625305 - C DYNC1I1 Frame_Shift_Ins p.H315Pfs*2 0.17 TCGA-AD-6964-01 7 97933608 97933608 T C BAIAP2L1 Missense_Mutation p.E441G 0.27 tolerated(0.25) benign(0.005) TCGA-AD-6964-01 7 97991694 97991694 C - BAIAP2L1 Frame_Shift_Del p.N36Ifs*6 0.18 TCGA-AD-6964-01 7 98941918 98941918 A G ARPC1A Missense_Mutation p.I58V 0.31 tolerated(0.11) benign(0.041) TCGA-AD-6964-01 7 99700369 99700369 C T AP4M1 Silent p.N73N 0.32 TCGA-AD-6964-01 7 99773256 99773256 G A GPC2 Missense_Mutation p.A196V 0.29 tolerated(0.07) possibly_damaging(0.828) TCGA-AD-6964-01 7 99774701 99774701 G A GPC2 Missense_Mutation p.A41V 0.13 deleterious(0.01) possibly_damaging(0.486) TCGA-AD-6964-01 7 99914726 99914726 C T SPDYE3 Missense_Mutation p.R432W 0.19 deleterious(0.01) benign(0.288) TCGA-AD-6964-01 8 100514077 100514077 A G VPS13B Missense_Mutation p.K1345E 0.12 tolerated(0.21) benign(0.024) TCGA-AD-6964-01 8 101178046 101178046 G A SPAG1 Missense_Mutation p.G49S 0.12 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 8 101281053 101281053 G T RNF19A Missense_Mutation p.P384H 0.29 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 8 104330885 104330885 T C FZD6 Missense_Mutation p.V82A 0.25 tolerated(1) possibly_damaging(0.5) TCGA-AD-6964-01 8 104340564 104340564 C T FZD6 Silent p.G487G 0.18 TCGA-AD-6964-01 8 104427266 104427266 C T DCAF13 Silent p.T16T 0.40 TCGA-AD-6964-01 8 10470467 10470467 C - RP1L1 Frame_Shift_Del p.V381Cfs*109 0.21 TCGA-AD-6964-01 8 104897933 104897933 G A RIMS2 Missense_Mutation p.S369N 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AD-6964-01 8 105511619 105511619 T C LRP12 Missense_Mutation p.Q134R 0.13 tolerated(1) benign(0.053) TCGA-AD-6964-01 8 106331191 106331191 A T ZFPM2 Nonsense_Mutation p.K8* 0.11 TCGA-AD-6964-01 8 106814826 106814826 A G ZFPM2 Missense_Mutation p.Q839R 0.11 tolerated(0.35) benign(0.232) TCGA-AD-6964-01 8 106815168 106815168 C T ZFPM2 Missense_Mutation p.A953V 0.13 tolerated_low_confidence(0.23) benign(0.103) TCGA-AD-6964-01 8 108264242 108264242 T C ANGPT1 Silent p.G446G 0.10 TCGA-AD-6964-01 8 110460519 110460519 G C PKHD1L1 Missense_Mutation p.G1975A 0.09 deleterious(0.03) probably_damaging(1) TCGA-AD-6964-01 8 11683666 11683666 A G FDFT1 Missense_Mutation p.N215S 0.21 deleterious(0.02) possibly_damaging(0.884) TCGA-AD-6964-01 8 121522256 121522256 T C MTBP Missense_Mutation p.Y656H 0.12 tolerated(0.05) probably_damaging(0.972) TCGA-AD-6964-01 8 124799557 124799557 G A FAM91A1 Missense_Mutation p.A379T 0.30 deleterious(0) probably_damaging(0.985) TCGA-AD-6964-01 8 125465108 125465108 G A TRMT12 3'UTR 0.23 TCGA-AD-6964-01 8 125498533 125498533 A G RNF139 Missense_Mutation p.M215V 0.10 tolerated(0.15) benign(0.082) TCGA-AD-6964-01 8 126445743 126445743 C T TRIB1 Missense_Mutation p.A182V 0.23 deleterious(0) probably_damaging(0.934) TCGA-AD-6964-01 8 134251196 134251196 G A NDRG1 Silent p.A370A 0.27 TCGA-AD-6964-01 8 142178477 142178477 G A DENND3 Missense_Mutation p.E630K 0.11 tolerated(0.17) possibly_damaging(0.796) TCGA-AD-6964-01 8 142367851 142367851 G A GPR20 Missense_Mutation p.A58V 0.29 tolerated(1) benign(0.001) TCGA-AD-6964-01 8 143425721 143425721 G A TSNARE1 Silent p.S117S 0.09 TCGA-AD-6964-01 8 143746682 143746682 T A JRK RNA 0.11 TCGA-AD-6964-01 8 144411603 144411603 C T TOP1MT Missense_Mutation p.A93T 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-AD-6964-01 8 144697027 144697027 C T TSTA3 Missense_Mutation p.R107H 0.11 tolerated(0.09) benign(0.013) TCGA-AD-6964-01 8 144697077 144697077 G A TSTA3 Silent p.N90N 0.14 TCGA-AD-6964-01 8 144808779 144808779 G A FAM83H Missense_Mutation p.A951V 0.36 tolerated(0.17) benign(0.001) TCGA-AD-6964-01 8 144994234 144994234 G A PLEC Missense_Mutation p.T3389M 0.26 probably_damaging(0.985) TCGA-AD-6964-01 8 145004642 145004642 C A PLEC Missense_Mutation p.K926N 0.30 unknown(0) TCGA-AD-6964-01 8 145007473 145007474 - C PLEC Frame_Shift_Ins p.E574Gfs*11 0.16 TCGA-AD-6964-01 8 145540171 145540171 C T DGAT1 3'UTR 0.21 TCGA-AD-6964-01 8 145541629 145541629 G T DGAT1 Missense_Mutation p.P268H 0.18 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 8 146156747 146156747 G A ZNF16 Missense_Mutation p.L476F 0.22 deleterious(0.02) probably_damaging(0.97) TCGA-AD-6964-01 8 17611619 17611619 T - MTUS1 Frame_Shift_Del p.A567Qfs*4 0.17 TCGA-AD-6964-01 8 1812553 1812553 A G ARHGEF10 Missense_Mutation p.T166A 0.27 tolerated_low_confidence(1) benign(0.003) TCGA-AD-6964-01 8 18257673 18257673 G A NAT2 Missense_Mutation p.A54T 0.30 tolerated(0.46) benign(0.005) TCGA-AD-6964-01 8 20068135 20068135 C T ATP6V1B2 Silent p.A147A 0.24 TCGA-AD-6964-01 8 23290534 23290534 G A ENTPD4 Missense_Mutation p.R586W 0.27 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 8 24813100 24813100 A G CTD-2168K21.2 5'Flank 0.12 TCGA-AD-6964-01 8 25189794 25189794 G A DOCK5 Missense_Mutation p.R644H 0.25 deleterious(0.04) benign(0.189) TCGA-AD-6964-01 8 25261113 25261113 T A DOCK5 Missense_Mutation p.S1656T 0.07 deleterious(0.02) possibly_damaging(0.569) TCGA-AD-6964-01 8 28209174 28209174 G - ZNF395 Frame_Shift_Del p.S358Afs*2 0.11 TCGA-AD-6964-01 8 28575124 28575124 G A EXTL3 Nonsense_Mutation p.W516* 0.14 TCGA-AD-6964-01 8 29194905 29194905 G A DUSP4 Missense_Mutation p.R275C 0.36 deleterious(0) probably_damaging(0.997) TCGA-AD-6964-01 8 37978473 37978473 G A ASH2L Missense_Mutation p.R324H 0.31 deleterious(0.01) benign(0.016) TCGA-AD-6964-01 8 38775491 38775491 A T PLEKHA2 Missense_Mutation p.D15V 0.13 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 8 41470367 41470367 G T AGPAT6 Missense_Mutation p.G267C 0.15 deleterious(0) probably_damaging(0.984) TCGA-AD-6964-01 8 41551514 41551514 A G ANK1 Missense_Mutation p.I1186T 0.10 deleterious(0) possibly_damaging(0.583) TCGA-AD-6964-01 8 42552617 42552617 A - CHRNB3 5'UTR 0.18 TCGA-AD-6964-01 8 48650068 48650068 C T CEBPD Silent p.V205V 0.24 TCGA-AD-6964-01 8 48696334 48696334 T C PRKDC Missense_Mutation p.Y3714C 0.27 probably_damaging(0.986) TCGA-AD-6964-01 8 48790380 48790380 A G PRKDC Silent p.P1755P 0.12 TCGA-AD-6964-01 8 51351101 51351101 A T SNTG1 Splice_Site p.X55_splice 0.26 TCGA-AD-6964-01 8 56015683 56015683 C A XKR4 Missense_Mutation p.P212Q 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-AD-6964-01 8 57079353 57079353 G A PLAG1 Missense_Mutation p.P318S 0.09 tolerated(0.19) probably_damaging(0.968) TCGA-AD-6964-01 8 59404207 59404207 A G CYP7A1 Silent p.L448L 0.30 TCGA-AD-6964-01 8 61773613 61773613 A - CHD7 Frame_Shift_Del p.N2588Ifs*4 0.14 TCGA-AD-6964-01 8 62559344 62559344 C T ASPH Missense_Mutation p.R195K 0.11 tolerated_low_confidence(0.92) benign(0.004) TCGA-AD-6964-01 8 67039498 67039498 G A TRIM55 5'UTR 0.12 TCGA-AD-6964-01 8 67974146 67974146 T C COPS5 Missense_Mutation p.Y29C 0.07 deleterious(0) probably_damaging(0.928) TCGA-AD-6964-01 8 69011966 69011966 C T PREX2 Missense_Mutation p.T868I 0.08 tolerated(0.06) benign(0.017) TCGA-AD-6964-01 8 75227506 75227506 C T JPH1 Silent p.A243A 0.21 TCGA-AD-6964-01 8 77763181 77763182 - A ZFHX4 Frame_Shift_Ins p.V1343Sfs*4 0.07 TCGA-AD-6964-01 8 80992548 80992548 A G TPD52 Splice_Site p.X47_splice 0.16 TCGA-AD-6964-01 8 87393738 87393738 G A WWP1 Missense_Mutation p.V72I 0.21 deleterious(0.04) benign(0.37) TCGA-AD-6964-01 8 87541196 87541196 G A CPNE3 Silent p.K52K 0.15 TCGA-AD-6964-01 8 87588069 87588069 A T CNGB3 Missense_Mutation p.V798D 0.13 deleterious(0) probably_damaging(0.914) TCGA-AD-6964-01 8 88885043 88885043 C T DCAF4L2 Missense_Mutation p.R386Q 0.17 tolerated(0.44) benign(0.014) TCGA-AD-6964-01 8 91055019 91055019 A - DECR1 Frame_Shift_Del p.T245Pfs*18 0.10 TCGA-AD-6964-01 8 92090886 92090886 G A OTUD6B Missense_Mutation p.M236I 0.18 tolerated(0.26) benign(0.005) TCGA-AD-6964-01 8 94797553 94797553 C T TMEM67 Missense_Mutation p.A412V 0.32 deleterious(0.03) possibly_damaging(0.848) TCGA-AD-6964-01 8 94935250 94935250 A G PDP1 Silent p.E346E 0.35 TCGA-AD-6964-01 8 9609160 9609160 A G TNKS Silent p.P958P 0.09 TCGA-AD-6964-01 8 96167271 96167271 A G PLEKHF2 3'UTR 0.21 TCGA-AD-6964-01 9 100431245 100431245 G A NCBP1 Missense_Mutation p.V712I 0.24 tolerated(1) benign(0.085) TCGA-AD-6964-01 9 100431906 100431906 T C NCBP1 Missense_Mutation p.V726A 0.20 tolerated(0.38) benign(0.163) TCGA-AD-6964-01 9 100767307 100767307 A G ANP32B Missense_Mutation p.D130G 0.23 tolerated(0.09) benign(0.308) TCGA-AD-6964-01 9 101594232 101594232 G A GALNT12 Missense_Mutation p.V304I 0.32 deleterious(0.03) probably_damaging(0.969) TCGA-AD-6964-01 9 104124591 104124591 C T BAAT 3'UTR 0.24 TCGA-AD-6964-01 9 104323203 104323203 C T RNF20 Missense_Mutation p.R835C 0.27 deleterious(0) probably_damaging(0.982) TCGA-AD-6964-01 9 108126887 108126887 C A SLC44A1 Missense_Mutation p.P380H 0.12 tolerated(0.55) benign(0.393) TCGA-AD-6964-01 9 109686964 109686964 C T ZNF462 Silent p.R257R 0.23 TCGA-AD-6964-01 9 114904698 114904698 C T SUSD1 Missense_Mutation p.R203H 0.26 tolerated(1) benign(0.022) TCGA-AD-6964-01 9 116183406 116183406 G A C9orf43 Silent p.E123E 0.24 TCGA-AD-6964-01 9 117121737 117121737 A G AKNA Intron 0.42 TCGA-AD-6964-01 9 117166271 117166271 C T DFNB31 Missense_Mutation p.A775T 0.11 tolerated(0.33) benign(0.002) TCGA-AD-6964-01 9 117803337 117803337 C T TNC Missense_Mutation p.G1759R 0.19 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 9 117808756 117808756 G A TNC Silent p.Y1686Y 0.23 TCGA-AD-6964-01 9 117848369 117848369 G A TNC Silent p.C547C 0.28 TCGA-AD-6964-01 9 119188364 119188364 C T ASTN2 Silent p.K1211K 0.25 TCGA-AD-6964-01 9 125616818 125616818 A G RC3H2 Silent p.Y964Y 0.11 TCGA-AD-6964-01 9 126776273 126776273 C T LHX2 Silent p.L52L 0.17 TCGA-AD-6964-01 9 128099735 128099735 T C GAPVD1 Silent p.S941S 0.12 TCGA-AD-6964-01 9 129646451 129646451 T - ZBTB34 3'UTR 0.12 TCGA-AD-6964-01 9 130486543 130486543 G A TTC16 Silent p.V339V 0.24 TCGA-AD-6964-01 9 130616696 130616696 C T ENG 5'UTR 0.14 TCGA-AD-6964-01 9 131222909 131222909 A - ODF2 Intron 0.19 TCGA-AD-6964-01 9 131345476 131345476 C A SPTAN1 Missense_Mutation p.H643N 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 9 131503116 131503116 C T ZER1 Silent p.G596G 0.14 TCGA-AD-6964-01 9 132631176 132631176 C T USP20 Missense_Mutation p.R391C 0.23 deleterious(0.01) possibly_damaging(0.846) TCGA-AD-6964-01 9 132848739 132848739 G A GPR107 Missense_Mutation p.G202E 0.21 tolerated(0.07) benign(0.013) TCGA-AD-6964-01 9 133506120 133506120 G - FUBP3 Frame_Shift_Del p.V410Ffs*12 0.12 TCGA-AD-6964-01 9 135703335 135703335 A G AK8 Intron 0.24 TCGA-AD-6964-01 9 138836959 138836959 C T UBAC1 Missense_Mutation p.S264N 0.18 tolerated(0.15) benign(0.002) TCGA-AD-6964-01 9 138903627 138903627 C T NACC2 Missense_Mutation p.R500Q 0.33 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-AD-6964-01 9 139257541 139257541 C T DNLZ Missense_Mutation p.A90T 0.12 deleterious(0) probably_damaging(0.994) TCGA-AD-6964-01 9 139694552 139694552 C T CCDC183 Silent p.S123S 0.29 TCGA-AD-6964-01 9 139818402 139818402 G A TRAF2 Missense_Mutation p.V413M 0.25 deleterious(0) benign(0.439) TCGA-AD-6964-01 9 140201674 140201674 G A EXD3 Missense_Mutation p.R787C 0.12 deleterious(0.04) benign(0.332) TCGA-AD-6964-01 9 14307384 14307385 CT - NFIB Frame_Shift_Del p.R55Sfs*5 0.17 TCGA-AD-6964-01 9 14619086 14619086 G - ZDHHC21 Frame_Shift_Del p.R226Efs*61 0.18 TCGA-AD-6964-01 9 14722233 14722233 C T CER1 Silent p.Q146Q 0.14 TCGA-AD-6964-01 9 15564014 15564014 G A CCDC171 5'UTR 0.21 TCGA-AD-6964-01 9 16583007 16583007 T C BNC2 Missense_Mutation p.Q136R 0.15 tolerated(0.06) benign(0.255) TCGA-AD-6964-01 9 20414362 20414362 C T MLLT3 Missense_Mutation p.S161N 0.17 tolerated(0.55) benign(0.001) TCGA-AD-6964-01 9 2718429 2718429 G T KCNV2 Missense_Mutation p.E230D 0.16 tolerated(0.15) benign(0.008) TCGA-AD-6964-01 9 2718884 2718884 T C KCNV2 Missense_Mutation p.M382T 0.14 deleterious(0.01) possibly_damaging(0.891) TCGA-AD-6964-01 9 33120463 33120463 A - B4GALT1 Frame_Shift_Del p.S264Hfs*29 0.18 TCGA-AD-6964-01 9 33944453 33944453 G A UBAP2 Silent p.S485S 0.17 TCGA-AD-6964-01 9 34371118 34371118 G A KIAA1161 Silent p.A574A 0.11 TCGA-AD-6964-01 9 34635675 34635675 C T SIGMAR1 Missense_Mutation p.G209D 0.14 deleterious(0.01) possibly_damaging(0.653) TCGA-AD-6964-01 9 34972417 34972417 C T KIAA1045 Silent p.T151T 0.20 TCGA-AD-6964-01 9 34996846 34996846 C A DNAJB5 Missense_Mutation p.L380M 0.12 tolerated(0.1) benign(0.011) TCGA-AD-6964-01 9 35679916 35679916 G A CA9 Silent p.A377A 0.11 TCGA-AD-6964-01 9 35714663 35714663 G A TLN1 Silent p.L965L 0.19 TCGA-AD-6964-01 9 35739367 35739367 G T GBA2 Silent p.S544S 0.18 TCGA-AD-6964-01 9 37002690 37002690 T C PAX5 Missense_Mutation p.I187V 0.10 deleterious(0.05) benign(0.207) TCGA-AD-6964-01 9 37440706 37440706 A G ZBTB5 Missense_Mutation p.C615R 0.20 deleterious(0) probably_damaging(0.998) TCGA-AD-6964-01 9 37522875 37522875 C A FBXO10 Missense_Mutation p.G626V 0.10 deleterious(0) probably_damaging(0.98) TCGA-AD-6964-01 9 4117892 4117892 C T GLIS3 Missense_Mutation p.R529H 0.23 deleterious(0) probably_damaging(0.996) TCGA-AD-6964-01 9 43624945 43624945 G A SPATA31A6 Missense_Mutation p.H1248Y 0.24 tolerated(1) benign(0.066) TCGA-AD-6964-01 9 4663700 4663700 C T PPAPDC2 3'UTR 0.21 TCGA-AD-6964-01 9 4841261 4841261 C T RCL1 Missense_Mutation p.A205V 0.23 tolerated(0.09) benign(0.072) TCGA-AD-6964-01 9 676976 676976 G A KANK1 Missense_Mutation p.A2T 0.26 deleterious_low_confidence(0) benign(0.171) TCGA-AD-6964-01 9 71397332 71397333 - T FAM122A 3'UTR 0.23 TCGA-AD-6964-01 9 74312965 74312965 G A TMEM2 Missense_Mutation p.P1178L 0.23 deleterious(0.01) benign(0.426) TCGA-AD-6964-01 9 74349881 74349881 C A TMEM2 Missense_Mutation p.V412F 0.11 tolerated(0.56) benign(0.057) TCGA-AD-6964-01 9 74865635 74865636 - T GDA Intron 0.18 TCGA-AD-6964-01 9 77277412 77277412 A G RORB Missense_Mutation p.Q261R 0.10 tolerated(0.88) benign(0.029) TCGA-AD-6964-01 9 78953338 78953338 C T PCSK5 Silent p.C1620C 0.18 TCGA-AD-6964-01 9 78973585 78973585 C T PCSK5 Missense_Mutation p.A1777V 0.18 tolerated(0.14) benign(0.004) TCGA-AD-6964-01 9 79320085 79320085 G A PRUNE2 Missense_Mutation p.P2369S 0.26 tolerated(0.3) probably_damaging(1) TCGA-AD-6964-01 9 79946949 79946949 A G VPS13A Silent p.P2005P 0.23 TCGA-AD-6964-01 9 86893217 86893217 G A SLC28A3 Silent p.N664N 0.16 TCGA-AD-6964-01 9 88204523 88204523 G A AGTPBP1 Missense_Mutation p.T841I 0.17 deleterious(0) probably_damaging(0.988) TCGA-AD-6964-01 9 91657029 91657029 G A SHC3 Silent p.Y424Y 0.26 TCGA-AD-6964-01 9 91994519 91994519 C T SEMA4D Silent p.Q563Q 0.32 TCGA-AD-6964-01 9 96009887 96009887 C T WNK2 Silent p.R535R 0.28 TCGA-AD-6964-01 9 96051650 96051650 G A WNK2 Silent p.P1575P 0.33 TCGA-AD-6964-01 9 96411361 96411361 C T PHF2 Missense_Mutation p.R157W 0.34 deleterious(0) unknown(0) TCGA-AD-6964-01 9 96439161 96439161 A G PHF2 Missense_Mutation p.T1040A 0.16 tolerated(0.42) benign(0.001) TCGA-AD-6964-01 X 100668495 100668495 T - HNRNPH2 3'UTR 0.33 TCGA-AD-6964-01 X 101409227 101409227 A T BEX5 Missense_Mutation p.V4D 0.16 tolerated(0.19) benign(0.007) TCGA-AD-6964-01 X 10153089 10153089 C T CLCN4 Missense_Mutation p.A6V 0.56 tolerated(0.09) benign(0.001) TCGA-AD-6964-01 X 101572159 101572159 C T NXF2 Intron 0.11 TCGA-AD-6964-01 X 106173763 106173763 C T CLDN2 3'UTR 0.13 TCGA-AD-6964-01 X 106841074 106841074 G A FRMPD3 Silent p.E688E 0.50 TCGA-AD-6964-01 X 107824235 107824235 A - COL4A5 Frame_Shift_Del p.N306Mfs*40 0.23 TCGA-AD-6964-01 X 108636125 108636125 G A GUCY2F Missense_Mutation p.P862S 0.14 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 X 110644242 110644242 T - DCX Frame_Shift_Del p.K308Nfs*10 0.36 TCGA-AD-6964-01 X 115593978 115593978 C T CT83 Missense_Mutation p.A14T 0.44 tolerated(0.16) possibly_damaging(0.908) TCGA-AD-6964-01 X 117714102 117714102 C T DOCK11 Missense_Mutation p.R519C 0.12 deleterious(0) possibly_damaging(0.84) TCGA-AD-6964-01 X 118603951 118603951 A G SLC25A5 Missense_Mutation p.K147E 0.47 deleterious(0) benign(0.134) TCGA-AD-6964-01 X 127185266 127185266 A - ACTRT1 Frame_Shift_Del p.L307Pfs*9 0.10 TCGA-AD-6964-01 X 128621084 128621084 T - SMARCA1 Frame_Shift_Del p.M710Wfs*6 0.27 TCGA-AD-6964-01 X 12937472 12937472 G A TLR8 Missense_Mutation p.G105R 0.58 tolerated(0.21) benign(0.001) TCGA-AD-6964-01 X 129480555 129480555 G A SLC25A14 Silent p.Q69Q 0.57 TCGA-AD-6964-01 X 129499400 129499400 C T SLC25A14 Intron 0.12 TCGA-AD-6964-01 X 129804010 129804010 C T ENOX2 Missense_Mutation p.R237H 0.49 deleterious(0.04) benign(0.011) TCGA-AD-6964-01 X 130420579 130420579 G A IGSF1 Missense_Mutation p.R24W 0.41 tolerated(0.19) benign(0.001) TCGA-AD-6964-01 X 133922811 133922811 A G FAM122B Silent p.I128I 0.14 TCGA-AD-6964-01 X 134125373 134125373 T C SMIM10 Missense_Mutation p.I83T 0.38 deleterious(0) probably_damaging(0.99) TCGA-AD-6964-01 X 135427705 135427705 A G GPR112 Missense_Mutation p.T614A 0.15 deleterious(0.02) benign(0.192) TCGA-AD-6964-01 X 137717699 137717699 T C FGF13 Missense_Mutation p.N184D 0.48 tolerated(0.08) benign(0.14) TCGA-AD-6964-01 X 13787409 13787409 C T OFD1 3'UTR 0.12 TCGA-AD-6964-01 X 139866261 139866261 T C CDR1 Missense_Mutation p.M91V 0.49 tolerated(0.48) benign(0.043) TCGA-AD-6964-01 X 144905353 144905353 G A SLITRK2 Silent p.L470L 0.53 TCGA-AD-6964-01 X 148059905 148059905 T C AFF2 Missense_Mutation p.S1164P 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-AD-6964-01 X 1484106 1484106 T C IL3RA Missense_Mutation p.Y279H 0.09 tolerated(0.55) benign(0.254) TCGA-AD-6964-01 X 1497618 1497618 C T IL3RA Missense_Mutation p.T314M 0.20 tolerated(0.07) possibly_damaging(0.557) TCGA-AD-6964-01 X 149787548 149787548 G A MTM1 Missense_Mutation p.G127D 0.50 tolerated(0.26) probably_damaging(0.957) TCGA-AD-6964-01 X 150348647 150348647 G A GPR50 Missense_Mutation p.V198I 0.67 tolerated(0.35) benign(0.044) TCGA-AD-6964-01 X 1508192 1508192 G A SLC25A6 Silent p.S180S 0.20 TCGA-AD-6964-01 X 152101441 152101441 C T ZNF185 Silent p.G348G 0.56 TCGA-AD-6964-01 X 153039461 153039461 C T PLXNB3 Silent p.L1166L 0.33 TCGA-AD-6964-01 X 153593019 153593019 C T FLNA Missense_Mutation p.V633M 0.44 deleterious(0) probably_damaging(0.995) TCGA-AD-6964-01 X 154133284 154133284 A G F8 Silent p.N1796N 0.65 TCGA-AD-6964-01 X 154194815 154194815 G A F8 Missense_Mutation p.S386F 0.43 tolerated(0.2) possibly_damaging(0.615) TCGA-AD-6964-01 X 155003632 155003632 C T SPRY3 Silent p.A33A 0.14 TCGA-AD-6964-01 X 155007254 155007254 G A SPRY3 3'UTR 0.18 TCGA-AD-6964-01 X 1584668 1584668 C T P2RY8 Missense_Mutation p.V262M 0.20 deleterious(0) probably_damaging(0.94) TCGA-AD-6964-01 X 16168472 16168472 C T GRPR Missense_Mutation p.A153V 0.41 deleterious(0.01) probably_damaging(0.924) TCGA-AD-6964-01 X 16627692 16627692 A G CTPS2 Silent p.L555L 0.11 TCGA-AD-6964-01 X 18198700 18198700 G A BEND2 Silent p.R453R 0.34 TCGA-AD-6964-01 X 2161227 2161227 G A DHRSX Missense_Mutation p.A214V 0.12 deleterious(0) probably_damaging(0.999) TCGA-AD-6964-01 X 21761875 21761875 A G SMPX Missense_Mutation p.V42A 0.50 tolerated_low_confidence(0.46) benign(0) TCGA-AD-6964-01 X 21772400 21772400 C T SMPX Missense_Mutation p.M3I 0.48 deleterious_low_confidence(0.01) benign(0.069) TCGA-AD-6964-01 X 21875626 21875626 G A YY2 Missense_Mutation p.V342M 0.42 deleterious(0.03) possibly_damaging(0.814) TCGA-AD-6964-01 X 22012551 22012551 G A SMS 3'UTR 0.37 TCGA-AD-6964-01 X 221820 221820 G A GTPBP6 Missense_Mutation p.P262L 0.08 deleterious(0.04) possibly_damaging(0.843) TCGA-AD-6964-01 X 23411385 23411385 C T PTCHD1 Missense_Mutation p.R584W 0.47 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 X 30322739 30322739 C T NR0B1 Missense_Mutation p.S457N 0.38 tolerated(0.19) benign(0.042) TCGA-AD-6964-01 X 307467 307467 G A PPP2R3B Missense_Mutation p.A254V 0.20 deleterious(0.02) benign(0.075) TCGA-AD-6964-01 X 3261696 3261696 A T MXRA5 Missense_Mutation p.I60N 0.09 deleterious(0) probably_damaging(0.985) TCGA-AD-6964-01 X 41205800 41205800 A G DDX3X Missense_Mutation p.I514V 0.44 tolerated(0.26) benign(0.287) TCGA-AD-6964-01 X 44935952 44935952 A - KDM6A Frame_Shift_Del p.N906Mfs*31 0.26 TCGA-AD-6964-01 X 48819729 48819730 - G KCND1 3'UTR 0.50 TCGA-AD-6964-01 X 49957594 49957594 G A AKAP4 Silent p.G590G 0.13 TCGA-AD-6964-01 X 53584222 53584222 T C HUWE1 Intron 0.33 TCGA-AD-6964-01 X 53603879 53603879 T C HUWE1 Silent p.A1955A 0.48 TCGA-AD-6964-01 X 53613484 53613484 G A HUWE1 Missense_Mutation p.A1597V 0.32 benign(0.1) TCGA-AD-6964-01 X 54836306 54836306 C T MAGED2 Missense_Mutation p.A66V 0.18 tolerated(0.16) benign(0.025) TCGA-AD-6964-01 X 56292152 56292152 A G KLF8 Silent p.G207G 0.22 TCGA-AD-6964-01 X 57621245 57621250 TAACTG AACTGCC ZXDB 3'UTR 0.25 TCGA-AD-6964-01 X 69247794 69247798 TTCCT CCCCCA EDA Frame_Shift_Ins p.I205Tfs*35 0.12 TCGA-AD-6964-01 X 70341237 70341237 C T MED12 Missense_Mutation p.R266C 0.32 probably_damaging(0.988) TCGA-AD-6964-01 X 70832747 70832747 G A ACRC Missense_Mutation p.R664H 0.08 unknown(0) TCGA-AD-6964-01 X 73960046 73960046 C T KIAA2022 Missense_Mutation p.R1449H 0.57 deleterious(0) probably_damaging(1) TCGA-AD-6964-01 X 79989615 79989615 A G BRWD3 Splice_Site p.X362_splice 0.08 TCGA-AD-6964-01 Y 14847611 14847611 T - USP9Y Frame_Shift_Del p.F243Lfs*6 0.24 TCGA-AD-6964-01 Y 15016794 15016794 C T DDX3Y 5'UTR 0.45 TCGA-AD-6964-01 Y 15363005 15363005 T A UTY Silent p.V1303V 0.39 TCGA-AD-6964-01 Y 15817173 15817173 C A TMSB4Y 3'UTR 0.45 TCGA-AD-6964-01 Y 4925462 4925462 G A PCDH11Y Missense_Mutation p.V200I 0.56 tolerated(0.54) benign(0.006) TCGA-AD-6965-01 10 106960988 106960988 C A SORCS3 Silent p.V746V 0.62 TCGA-AD-6965-01 10 115663308 115663309 - A NHLRC2 Frame_Shift_Ins p.N508Kfs*13 0.26 TCGA-AD-6965-01 10 134013952 134013952 G A DPYSL4 Missense_Mutation p.V302I 0.37 tolerated(0.06) possibly_damaging(0.769) TCGA-AD-6965-01 10 26446430 26446430 T C MYO3A Silent p.A995A 0.41 TCGA-AD-6965-01 10 43316033 43316033 G A BMS1 Silent p.R949R 0.41 TCGA-AD-6965-01 10 49452863 49452863 G T FRMPD2 Silent p.L113L 0.37 TCGA-AD-6965-01 10 49634523 49634523 G C MAPK8 Missense_Mutation p.W324C 0.09 deleterious(0.01) probably_damaging(1) TCGA-AD-6965-01 10 49951468 49951468 C A WDFY4 Silent p.L778L 0.25 TCGA-AD-6965-01 10 71391489 71391489 C T C10orf35 5'UTR 0.42 TCGA-AD-6965-01 10 72500825 72500825 G A ADAMTS14 Missense_Mutation p.E614K 0.63 tolerated(0.12) benign(0.285) TCGA-AD-6965-01 10 75561118 75561118 C T ZSWIM8 Silent p.D1790D 0.47 TCGA-AD-6965-01 11 105850542 105850542 C T GRIA4 3'UTR 0.40 TCGA-AD-6965-01 11 134074808 134074808 G A NCAPD3 Missense_Mutation p.H359Y 0.46 deleterious(0.01) probably_damaging(0.99) TCGA-AD-6965-01 11 46401472 46401472 G A DGKZ Missense_Mutation p.R1110Q 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-AD-6965-01 11 56409353 56409353 G A OR5AP2 Missense_Mutation p.P188L 0.48 tolerated(0.06) benign(0.378) TCGA-AD-6965-01 11 61032483 61032483 G A VWCE Missense_Mutation p.A695V 0.43 tolerated(0.66) benign(0.005) TCGA-AD-6965-01 11 7110495 7110495 G A RBMXL2 Silent p.S48S 0.44 TCGA-AD-6965-01 11 71169524 71169524 C T NADSYN1 Missense_Mutation p.S66L 0.36 deleterious(0.01) probably_damaging(0.983) TCGA-AD-6965-01 11 72611365 72611365 T A FCHSD2 Intron 0.42 TCGA-AD-6965-01 11 800206 800206 G A PIDD Silent p.P733P 0.35 TCGA-AD-6965-01 11 92714838 92714838 G A MTNR1B Missense_Mutation p.R150Q 0.40 tolerated(0.1) benign(0.087) TCGA-AD-6965-01 12 132682497 132682497 C T GALNT9 Missense_Mutation p.R136Q 0.84 tolerated(0.36) probably_damaging(0.992) TCGA-AD-6965-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.85 deleterious(0.02) possibly_damaging(0.773) TCGA-AD-6965-01 12 5020851 5020851 C T KCNA1 Missense_Mutation p.R103W 0.10 deleterious(0) probably_damaging(0.999) TCGA-AD-6965-01 12 56532018 56532018 C T ESYT1 Missense_Mutation p.R777C 0.38 tolerated(0.08) benign(0.006) TCGA-AD-6965-01 12 75601158 75601158 G A KCNC2 Silent p.D202D 0.82 TCGA-AD-6965-01 13 112725709 112725709 T G SOX1 3'UTR 0.18 TCGA-AD-6965-01 13 30107090 30107090 C T SLC7A1 Missense_Mutation p.A134T 0.14 tolerated(0.1) probably_damaging(1) TCGA-AD-6965-01 13 58208229 58208229 G A PCDH17 Missense_Mutation p.G517S 0.21 tolerated(0.19) benign(0.079) TCGA-AD-6965-01 14 20389104 20389104 G T OR4K5 Silent p.V113V 0.12 TCGA-AD-6965-01 14 20849744 20849744 C T TEP1 Missense_Mutation p.G1509E 0.30 tolerated(0.31) benign(0.04) TCGA-AD-6965-01 14 29237820 29237820 G A FOXG1 Silent p.P445P 0.50 TCGA-AD-6965-01 14 39645767 39645770 CAAA - PNN Frame_Shift_Del p.K75Rfs*42 0.08 TCGA-AD-6965-01 14 52481931 52481931 C T NID2 Missense_Mutation p.G1031S 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-AD-6965-01 15 52675297 52675297 A G MYO5A Missense_Mutation p.F668S 0.52 tolerated(0.19) benign(0.026) TCGA-AD-6965-01 15 56958597 56958597 T C ZNF280D Missense_Mutation p.M664V 0.08 tolerated(0.2) benign(0.358) TCGA-AD-6965-01 15 89400924 89400924 G C ACAN Missense_Mutation p.S1703T 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-AD-6965-01 16 11868329 11868329 C T ZC3H7A Silent p.P222P 0.45 TCGA-AD-6965-01 16 22335947 22335947 C T POLR3E Missense_Mutation p.R418W 0.57 deleterious(0) probably_damaging(0.951) TCGA-AD-6965-01 16 25266629 25266629 T A ZKSCAN2 Missense_Mutation p.T162S 0.59 tolerated(0.68) benign(0.003) TCGA-AD-6965-01 16 32266446 32266446 C T TP53TG3D 3'UTR 0.33 TCGA-AD-6965-01 16 58320039 58320042 TGTG - PRSS54 Frame_Shift_Del p.H107Qfs*19 0.40 TCGA-AD-6965-01 16 66956067 66956067 C T RRAD Missense_Mutation p.R280H 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-AD-6965-01 16 72822521 72822521 C T ZFHX3 Silent p.P3218P 0.49 TCGA-AD-6965-01 16 77769770 77769770 G A NUDT7 Missense_Mutation p.D79N 0.50 deleterious(0) possibly_damaging(0.639) TCGA-AD-6965-01 16 84256337 84256337 C T KCNG4 Missense_Mutation p.R349H 0.50 deleterious(0) probably_damaging(0.999) TCGA-AD-6965-01 17 36104758 36104758 C G HNF1B Missense_Mutation p.G40R 0.65 tolerated(0.18) probably_damaging(1) TCGA-AD-6965-01 17 45258958 45258958 C A CDC27 Missense_Mutation p.V25F 0.31 deleterious(0.01) probably_damaging(0.918) TCGA-AD-6965-01 17 4688708 4688708 G A VMO1 Silent p.L186L 0.85 TCGA-AD-6965-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.81 TCGA-AD-6965-01 18 77171375 77171375 C T NFATC1 Missense_Mutation p.A354V 0.71 tolerated(0.52) benign(0.048) TCGA-AD-6965-01 19 1108205 1108205 C T SBNO2 3'UTR 0.50 TCGA-AD-6965-01 19 17283620 17283620 T A MYO9B Missense_Mutation p.L663Q 0.69 deleterious(0) probably_damaging(1) TCGA-AD-6965-01 19 17516283 17516283 G A BST2 Silent p.I34I 0.28 TCGA-AD-6965-01 19 34180130 34180130 C T CHST8 5'UTR 0.33 TCGA-AD-6965-01 19 35251242 35251242 T C ZNF599 Missense_Mutation p.D155G 0.90 tolerated(0.42) benign(0.001) TCGA-AD-6965-01 19 36362870 36362870 C T APLP1 Missense_Mutation p.P261L 0.34 tolerated(0.66) benign(0.012) TCGA-AD-6965-01 19 50796921 50796921 C T MYH14 Missense_Mutation p.R1816C 0.08 deleterious(0) probably_damaging(0.95) TCGA-AD-6965-01 19 51170069 51170069 G A SHANK1 Silent p.A1716A 0.32 TCGA-AD-6965-01 19 52327908 52327908 G A FPR3 Missense_Mutation p.V303I 0.19 deleterious(0) possibly_damaging(0.899) TCGA-AD-6965-01 19 54672262 54672262 T C TMC4 Missense_Mutation p.D202G 0.18 tolerated(0.24) benign(0.001) TCGA-AD-6965-01 19 56089469 56089469 A T ZNF579 Missense_Mutation p.S513T 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.827) TCGA-AD-6965-01 19 56953864 56953864 G A ZNF667 Missense_Mutation p.T167I 0.21 deleterious(0.03) benign(0.015) TCGA-AD-6965-01 19 7755089 7755089 C T FCER2 Silent p.L228L 0.36 TCGA-AD-6965-01 1 1249116 1249116 G A CPSF3L Missense_Mutation p.P324L 0.52 deleterious(0) probably_damaging(0.97) TCGA-AD-6965-01 1 146696535 146696535 A G FMO5 Silent p.P29P 0.09 TCGA-AD-6965-01 1 156883830 156883830 G A PEAR1 Missense_Mutation p.R967Q 0.23 tolerated(0.29) benign(0.005) TCGA-AD-6965-01 1 16111114 16111114 C T FBLIM1 Silent p.C263C 0.33 TCGA-AD-6965-01 1 186275620 186275620 C A PRG4 Missense_Mutation p.P257T 0.26 possibly_damaging(0.504) TCGA-AD-6965-01 1 227268622 227268622 C T CDC42BPA Missense_Mutation p.E818K 0.24 deleterious(0) probably_damaging(0.999) TCGA-AD-6965-01 1 228566375 228566375 C A OBSCN Missense_Mutation p.P8884Q 0.24 possibly_damaging(0.814) TCGA-AD-6965-01 1 228879371 228879371 G A RHOU Missense_Mutation p.A221T 0.32 deleterious(0.05) possibly_damaging(0.58) TCGA-AD-6965-01 1 6188947 6188947 G A CHD5 Silent p.D1190D 0.72 TCGA-AD-6965-01 1 64101904 64101904 G T PGM1 Splice_Site p.X310_splice 0.30 TCGA-AD-6965-01 1 8930528 8930528 G C ENO1 Missense_Mutation p.P75A 0.28 deleterious_low_confidence(0.03) benign(0.011) TCGA-AD-6965-01 20 1286148 1286148 G A SNPH Missense_Mutation p.R312H 0.59 deleterious(0.02) possibly_damaging(0.537) TCGA-AD-6965-01 20 30407979 30407979 G A MYLK2 Missense_Mutation p.D35N 0.16 deleterious_low_confidence(0.01) benign(0.054) TCGA-AD-6965-01 20 47266679 47266679 C T PREX1 Silent p.P961P 0.72 TCGA-AD-6965-01 20 54578977 54578977 G C CBLN4 Missense_Mutation p.S84C 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-AD-6965-01 20 58533624 58533624 G A CDH26 5'UTR 0.43 TCGA-AD-6965-01 20 9434022 9434022 G T PLCB4 Missense_Mutation p.C958F 0.67 tolerated(0.25) possibly_damaging(0.805) TCGA-AD-6965-01 21 31986192 31986192 C T KRTAP6-1 Missense_Mutation p.G11D 0.51 unknown(0) TCGA-AD-6965-01 21 44839068 44839068 C T SIK1 Missense_Mutation p.R432Q 0.45 tolerated(0.05) probably_damaging(0.984) TCGA-AD-6965-01 22 33376642 33376642 G C SYN3 Missense_Mutation p.I119M 0.88 deleterious(0) unknown(0) TCGA-AD-6965-01 22 46611089 46611089 G A PPARA Silent p.S76S 0.68 TCGA-AD-6965-01 2 132273953 132273953 G A AC093838.4 RNA 0.45 TCGA-AD-6965-01 2 167060871 167060871 C G SCN9A Missense_Mutation p.G1490A 0.41 tolerated(0.79) benign(0.004) TCGA-AD-6965-01 2 167284443 167284443 C T SCN7A Missense_Mutation p.R903H 0.46 deleterious(0.03) benign(0.04) TCGA-AD-6965-01 2 180809944 180809944 T C CWC22 Missense_Mutation p.E880G 0.43 deleterious_low_confidence(0.04) benign(0.001) TCGA-AD-6965-01 2 197990583 197990583 G A ANKRD44 Missense_Mutation p.A147V 0.46 deleterious(0) probably_damaging(0.996) TCGA-AD-6965-01 2 210559274 210559274 G T MAP2 Missense_Mutation p.D794Y 0.49 deleterious(0) probably_damaging(0.98) TCGA-AD-6965-01 2 220113176 220113176 G A STK16 Silent p.S271S 0.47 TCGA-AD-6965-01 2 25523048 25523048 C T DNMT3A Missense_Mutation p.R46Q 0.64 deleterious_low_confidence(0.04) possibly_damaging(0.602) TCGA-AD-6965-01 2 26683738 26683738 G A OTOF Silent p.N1898N 0.44 TCGA-AD-6965-01 2 56144917 56144917 G A EFEMP1 Nonsense_Mutation p.R134* 0.40 TCGA-AD-6965-01 2 66691327 66691327 C G MEIS1 Missense_Mutation p.H239Q 0.35 tolerated(1) benign(0.001) TCGA-AD-6965-01 2 74720210 74720210 A T TTC31 Silent p.S475S 0.46 TCGA-AD-6965-01 3 1363509 1363510 - T CNTN6 Frame_Shift_Ins p.Y315Lfs*19 0.17 TCGA-AD-6965-01 3 142840668 142840668 T A CHST2 Missense_Mutation p.V337E 0.24 deleterious(0) probably_damaging(0.997) TCGA-AD-6965-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.47 tolerated(0.21) possibly_damaging(0.893) TCGA-AD-6965-01 3 185304163 185304163 C T SENP2 5'UTR 0.33 TCGA-AD-6965-01 3 49405862 49405863 TA - RHOA Frame_Shift_Del p.L92* 0.29 TCGA-AD-6965-01 3 57312577 57312577 G T ASB14 Missense_Mutation p.P420H 0.41 deleterious(0.03) possibly_damaging(0.827) TCGA-AD-6965-01 4 114294251 114294251 C T ANK2 Silent p.D3872D 0.60 TCGA-AD-6965-01 4 122853493 122853493 G A TRPC3 Missense_Mutation p.P307L 0.63 deleterious(0) probably_damaging(0.996) TCGA-AD-6965-01 4 128816107 128816107 G C PLK4 Splice_Site p.X855_splice 0.27 TCGA-AD-6965-01 4 155250757 155250757 G A DCHS2 Missense_Mutation p.A824V 0.60 tolerated(0.83) benign(0.001) TCGA-AD-6965-01 4 162307468 162307468 C T FSTL5 Missense_Mutation p.G659S 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-AD-6965-01 4 162307653 162307653 G A FSTL5 Intron 0.62 TCGA-AD-6965-01 4 2828957 2828957 C T SH3BP2 Silent p.S200S 0.38 TCGA-AD-6965-01 4 48503733 48503733 T C FRYL Silent p.R2833R 0.45 TCGA-AD-6965-01 4 57181694 57181694 C A KIAA1211 Missense_Mutation p.L676M 0.13 tolerated(0.06) possibly_damaging(0.82) TCGA-AD-6965-01 4 66201700 66201700 C A EPHA5 Missense_Mutation p.K934N 0.23 deleterious(0) probably_damaging(0.98) TCGA-AD-6965-01 4 66201815 66201815 C T EPHA5 Missense_Mutation p.R896H 0.64 deleterious(0.01) probably_damaging(0.996) TCGA-AD-6965-01 4 74349998 74349998 A G AFM Missense_Mutation p.Y54C 0.22 deleterious(0.01) probably_damaging(0.976) TCGA-AD-6965-01 4 89052266 89052266 G A ABCG2 Missense_Mutation p.R160W 0.59 deleterious(0) probably_damaging(0.996) TCGA-AD-6965-01 4 89380622 89380622 G T HERC5 Splice_Site p.X130_splice 0.54 TCGA-AD-6965-01 4 98480083 98480083 G A STPG2 3'UTR 0.26 TCGA-AD-6965-01 5 112116586 112116586 G T APC Nonsense_Mutation p.E211* 0.25 TCGA-AD-6965-01 5 112175513 112175513 G T APC Nonsense_Mutation p.E1408* 0.66 TCGA-AD-6965-01 5 140222268 140222268 G A PCDHA8 Silent p.A454A 0.65 TCGA-AD-6965-01 5 140745874 140745874 G A PCDHGA5 Silent p.T659T 0.62 TCGA-AD-6965-01 5 140754997 140754997 G A PCDHGA6 Silent p.P449P 0.65 TCGA-AD-6965-01 5 140769219 140769219 G C PCDHGB4 Missense_Mutation p.V590L 0.12 deleterious(0) probably_damaging(0.996) TCGA-AD-6965-01 5 145719482 145719482 G A POU4F3 Silent p.P164P 0.62 TCGA-AD-6965-01 5 154395556 154395556 C T KIF4B Nonsense_Mutation p.R713* 0.26 TCGA-AD-6965-01 5 159738892 159738892 C T CCNJL Silent p.S13S 0.09 TCGA-AD-6965-01 5 161281176 161281176 G T GABRA1 Silent p.P29P 0.36 TCGA-AD-6965-01 5 38407068 38407068 C T EGFLAM Missense_Mutation p.P323S 0.55 tolerated(0.13) benign(0.007) TCGA-AD-6965-01 5 79031242 79031242 T C CMYA5 Silent p.D2218D 0.45 TCGA-AD-6965-01 5 85582717 85582717 A G NBPF22P Intron 0.55 TCGA-AD-6965-01 6 11185548 11185548 G A NEDD9 Silent p.C784C 0.42 TCGA-AD-6965-01 6 132910504 132910504 G A TAAR5 Missense_Mutation p.R108C 0.46 deleterious(0.04) benign(0.08) TCGA-AD-6965-01 6 155581417 155581417 G A TFB1M Nonsense_Mutation p.R262* 0.43 TCGA-AD-6965-01 6 159401969 159401969 C A RSPH3 Splice_Site p.X375_splice 0.22 TCGA-AD-6965-01 6 169623564 169623564 C A THBS2 Missense_Mutation p.G927V 0.43 deleterious(0) probably_damaging(0.995) TCGA-AD-6965-01 6 27216973 27216973 A G PRSS16 Silent p.E144E 0.36 TCGA-AD-6965-01 6 27833117 27833117 T G HIST1H2AL 5'UTR 0.21 TCGA-AD-6965-01 6 43100188 43100188 C T PTK7 Missense_Mutation p.R339W 0.18 deleterious(0) possibly_damaging(0.893) TCGA-AD-6965-01 6 73933428 73933428 C T KHDC1L 3'UTR 0.41 TCGA-AD-6965-01 7 141764254 141764254 C T MGAM Silent p.D1472D 0.44 TCGA-AD-6965-01 7 57529575 57529575 G A ZNF716 Missense_Mutation p.D470N 0.37 deleterious(0) benign(0.04) TCGA-AD-6965-01 7 98552774 98552774 A G TRRAP Silent p.R1921R 0.08 TCGA-AD-6965-01 8 110655225 110655225 G A SYBU Intron 0.18 TCGA-AD-6965-01 8 132051773 132051773 G A ADCY8 Silent p.D269D 0.33 TCGA-AD-6965-01 8 16001119 16001119 T G MSR1 Silent p.G327G 0.77 TCGA-AD-6965-01 8 27927154 27927154 G A NUGGC Missense_Mutation p.S55L 0.89 tolerated(0.06) benign(0.093) TCGA-AD-6965-01 8 3059242 3059242 A T CSMD1 Missense_Mutation p.F1664I 0.61 possibly_damaging(0.804) TCGA-AD-6965-01 8 99961203 99961203 C T OSR2 Missense_Mutation p.A8V 0.56 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-AD-6965-01 9 103055224 103055224 C T INVS Silent p.P895P 0.65 TCGA-AD-6965-01 9 130493655 130493655 C A TTC16 Missense_Mutation p.Q865K 0.24 tolerated(0.06) benign(0.256) TCGA-AD-6965-01 9 131860910 131860910 G A CRAT Missense_Mutation p.R369W 0.49 deleterious(0) possibly_damaging(0.749) TCGA-AD-6965-01 9 135102260 135102260 C A NTNG2 Missense_Mutation p.N294K 0.26 tolerated(0.08) benign(0.031) TCGA-AD-6965-01 9 137646133 137646133 G A COL5A1 Silent p.V596V 0.32 TCGA-AD-6965-01 9 138011798 138011798 C T OLFM1 Missense_Mutation p.T393M 0.33 deleterious(0) probably_damaging(0.981) TCGA-AD-6965-01 9 139397703 139397703 C T NOTCH1 Missense_Mutation p.A1700T 0.42 deleterious(0) probably_damaging(0.999) TCGA-AD-6965-01 9 35735169 35735169 A G CREB3 Missense_Mutation p.S167G 0.84 deleterious(0) probably_damaging(0.999) TCGA-AD-6965-01 9 85862777 85862778 - A FRMD3 3'UTR 0.62 TCGA-AD-6965-01 9 93983252 93983252 G A AUH Silent p.R226R 0.48 TCGA-AD-6965-01 9 95179687 95179687 C T OMD Missense_Mutation p.G52R 0.61 tolerated(0.48) benign(0.011) TCGA-AD-6965-01 X 107978194 107978194 A G IRS4 Missense_Mutation p.S461P 0.43 deleterious_low_confidence(0.05) benign(0.015) TCGA-AD-6965-01 X 108638586 108638586 T C GUCY2F Missense_Mutation p.D803G 0.92 deleterious(0.01) possibly_damaging(0.653) TCGA-AD-6965-01 X 117570667 117570667 C T WDR44 Silent p.N618N 0.43 TCGA-AD-6965-01 X 140786655 140786655 C T SPANXD 5'UTR 0.45 TCGA-AD-6965-01 X 152936618 152936618 G A PNCK Silent p.D297D 0.09 TCGA-AD-6965-01 X 153716061 153716061 G - SLC10A3 Frame_Shift_Del p.L407* 0.47 TCGA-AD-6965-01 X 47044719 47044719 C T RBM10 Nonsense_Mutation p.Q707* 0.91 TCGA-AD-6965-01 X 47498500 47498500 G A ELK1 Missense_Mutation p.R150W 0.93 deleterious(0) probably_damaging(0.997) TCGA-AD-6965-01 X 48935213 48935213 G A WDR45 Intron 0.82 TCGA-AD-A5EJ-01 10 100202989 100202989 G A HPS1 Silent p.C3C 0.30 TCGA-AD-A5EJ-01 10 102738188 102738188 G A MRPL43 3'Flank 0.06 TCGA-AD-A5EJ-01 10 102748918 102748918 C T C10orf2 Silent p.A317A 0.36 TCGA-AD-A5EJ-01 10 102762593 102762593 C - LZTS2 Frame_Shift_Del p.S102Afs*41 0.26 TCGA-AD-A5EJ-01 10 102824710 102824710 C T KAZALD1 3'UTR 0.33 TCGA-AD-A5EJ-01 10 103342715 103342715 C T POLL Intron 0.33 TCGA-AD-A5EJ-01 10 104162031 104162031 G A NFKB2 Silent p.A867A 0.29 TCGA-AD-A5EJ-01 10 104614146 104614146 C T C10orf32 Missense_Mutation p.L35F 0.32 deleterious(0.03) probably_damaging(0.925) TCGA-AD-A5EJ-01 10 105349927 105349927 C T NEURL1 Missense_Mutation p.S508L 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-AD-A5EJ-01 10 105812888 105812888 G T COL17A1 Missense_Mutation p.P614T 0.27 unknown(0) TCGA-AD-A5EJ-01 10 120790422 120790422 C T NANOS1 3'UTR 0.05 TCGA-AD-A5EJ-01 10 121285560 121285561 - T RGS10 Frame_Shift_Ins p.M80Nfs*4 0.29 TCGA-AD-A5EJ-01 10 121429440 121429440 C T BAG3 Silent p.Y86Y 0.37 TCGA-AD-A5EJ-01 10 121556359 121556359 T C INPP5F Missense_Mutation p.C268R 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-AD-A5EJ-01 10 123846779 123846779 C T TACC2 Silent p.A1588A 0.14 TCGA-AD-A5EJ-01 10 126395368 126395368 G T FAM53B 5'UTR 0.40 TCGA-AD-A5EJ-01 10 126715849 126715849 G A CTBP2 Silent p.D160D 0.07 TCGA-AD-A5EJ-01 10 127427001 127427002 - T EDRF1 Frame_Shift_Ins p.L658Ffs*26 0.15 TCGA-AD-A5EJ-01 10 127434276 127434276 T C EDRF1 Missense_Mutation p.V864A 0.07 tolerated(0.86) benign(0.005) TCGA-AD-A5EJ-01 10 127697855 127697855 C T FANK1 Intron 0.36 TCGA-AD-A5EJ-01 10 127806630 127806630 G A ADAM12 Missense_Mutation p.P197S 0.13 tolerated(0.32) benign(0.004) TCGA-AD-A5EJ-01 10 129905119 129905119 G A MKI67 Missense_Mutation p.T1662I 0.30 tolerated(0.08) benign(0.02) TCGA-AD-A5EJ-01 10 1313176 1313176 G A ADARB2 Missense_Mutation p.A389V 0.36 tolerated(1) benign(0.075) TCGA-AD-A5EJ-01 10 131671761 131671761 G A EBF3 Missense_Mutation p.R246C 0.31 deleterious(0) probably_damaging(0.916) TCGA-AD-A5EJ-01 10 133107533 133107533 T C TCERG1L Silent p.L124L 0.30 TCGA-AD-A5EJ-01 10 13378340 13378340 G A SEPHS1 Missense_Mutation p.A103V 0.05 deleterious(0.04) possibly_damaging(0.564) TCGA-AD-A5EJ-01 10 133930598 133930598 C T JAKMIP3 Silent p.R51R 0.05 TCGA-AD-A5EJ-01 10 135076733 135076733 G A ADAM8 Missense_Mutation p.A801V 0.35 tolerated(0.3) benign(0.016) TCGA-AD-A5EJ-01 10 14862076 14862077 - C CDNF Frame_Shift_Ins p.E156Gfs*11 0.28 TCGA-AD-A5EJ-01 10 16877106 16877106 A G CUBN Silent p.V3423V 0.35 TCGA-AD-A5EJ-01 10 21804267 21804267 G A SKIDA1 Missense_Mutation p.R829C 0.34 deleterious(0) unknown(0) TCGA-AD-A5EJ-01 10 21875278 21875278 G A MLLT10 Splice_Site p.X99_splice 0.07 TCGA-AD-A5EJ-01 10 23607673 23607673 A G C10orf67 3'UTR 0.45 TCGA-AD-A5EJ-01 10 27318242 27318242 G A ANKRD26 Missense_Mutation p.A1284V 0.45 tolerated(0.56) benign(0.004) TCGA-AD-A5EJ-01 10 27450020 27450020 C T MASTL Intron 0.39 TCGA-AD-A5EJ-01 10 27538056 27538056 T C RP11-85G18.6 Intron 0.35 TCGA-AD-A5EJ-01 10 27822871 27822871 C T RAB18 Silent p.V131V 0.39 TCGA-AD-A5EJ-01 10 28224177 28224177 G A ARMC4 Missense_Mutation p.R753W 0.30 deleterious(0) probably_damaging(0.953) TCGA-AD-A5EJ-01 10 28358776 28358776 C T MPP7 Missense_Mutation p.V377M 0.40 deleterious(0.05) probably_damaging(0.919) TCGA-AD-A5EJ-01 10 294522 294522 C T ZMYND11 Missense_Mutation p.R492C 0.21 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 10 29762877 29762877 C T SVIL Missense_Mutation p.G1807S 0.52 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 10 32143029 32143029 G A ARHGAP12 Missense_Mutation p.H352Y 0.17 tolerated(0.05) benign(0.282) TCGA-AD-A5EJ-01 10 410947 410947 C A DIP2C Intron 0.26 TCGA-AD-A5EJ-01 10 45500019 45500019 T C ZNF22 3'UTR 0.50 TCGA-AD-A5EJ-01 10 45959128 45959128 G A MARCH8 Intron 0.36 TCGA-AD-A5EJ-01 10 48390567 48390567 G A RBP3 Missense_Mutation p.A104V 0.47 tolerated(0.23) benign(0.444) TCGA-AD-A5EJ-01 10 48413759 48413759 G A GDF2 Missense_Mutation p.P370L 0.40 deleterious(0.03) probably_damaging(0.934) TCGA-AD-A5EJ-01 10 49420069 49420069 C T FRMPD2 Silent p.Q513Q 0.37 TCGA-AD-A5EJ-01 10 49994855 49994855 G A WDFY4 Missense_Mutation p.E1250K 0.18 tolerated(0.24) benign(0.423) TCGA-AD-A5EJ-01 10 5197833 5197833 A - AKR1CL1 3'Flank 0.29 TCGA-AD-A5EJ-01 10 61574507 61574507 G A CCDC6 Missense_Mutation p.R197W 0.15 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 10 61946588 61946588 G A ANK3 Missense_Mutation p.A657V 0.36 probably_damaging(0.958) TCGA-AD-A5EJ-01 10 64573268 64573268 C T EGR2 Missense_Mutation p.R377H 0.25 deleterious(0) probably_damaging(0.954) TCGA-AD-A5EJ-01 10 71664696 71664696 C A COL13A1 Missense_Mutation p.P299H 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 10 71966090 71966090 C T PPA1 Splice_Site p.X242_splice 0.06 TCGA-AD-A5EJ-01 10 7242435 7242435 G A SFMBT2 Missense_Mutation p.T500I 0.35 tolerated(0.09) benign(0.07) TCGA-AD-A5EJ-01 10 72531131 72531131 C T TBATA 3'UTR 0.31 TCGA-AD-A5EJ-01 10 74928096 74928096 G T FAM149B1 5'UTR 0.30 TCGA-AD-A5EJ-01 10 75276502 75276502 C T USP54 Missense_Mutation p.A1228T 0.31 tolerated_low_confidence(0.28) benign(0.005) TCGA-AD-A5EJ-01 10 75391589 75391589 T C MYOZ1 3'UTR 0.41 TCGA-AD-A5EJ-01 10 76735201 76735201 G - KAT6B Frame_Shift_Del p.S371Hfs*86 0.11 TCGA-AD-A5EJ-01 10 77167501 77167501 G A RP11-399K21.14 5'Flank 0.13 TCGA-AD-A5EJ-01 10 79603395 79603395 C T DLG5 Missense_Mutation p.V312M 0.05 deleterious(0.01) benign(0.143) TCGA-AD-A5EJ-01 10 79814423 79814423 C T RPS24 Silent p.S175S 0.34 TCGA-AD-A5EJ-01 10 82348515 82348515 C T SH2D4B Nonsense_Mutation p.R209* 0.10 TCGA-AD-A5EJ-01 10 88220947 88220947 T C WAPAL Missense_Mutation p.H823R 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-AD-A5EJ-01 10 88728416 88728416 A G ADIRF Intron 0.15 TCGA-AD-A5EJ-01 10 88911312 88911313 TA - FAM35A Frame_Shift_Del p.I68Wfs*6 0.25 TCGA-AD-A5EJ-01 10 88988123 88988123 G A NUTM2A Silent p.G162G 0.22 TCGA-AD-A5EJ-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.29 TCGA-AD-A5EJ-01 10 89725060 89725061 - A PTEN Frame_Shift_Ins p.T350Nfs*11 0.25 TCGA-AD-A5EJ-01 10 90354490 90354490 A C LIPJ Missense_Mutation p.Q132H 0.45 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 10 90661477 90661477 T C STAMBPL1 Silent p.P4P 0.20 TCGA-AD-A5EJ-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.47 TCGA-AD-A5EJ-01 10 92654533 92654533 C T RPP30 Missense_Mutation p.A145V 0.33 deleterious(0.01) possibly_damaging(0.721) TCGA-AD-A5EJ-01 10 94695643 94695643 G A EXOC6 Splice_Site p.X404_splice 0.33 TCGA-AD-A5EJ-01 10 94822668 94822668 C T CYP26C1 Silent p.C207C 0.17 TCGA-AD-A5EJ-01 10 97920108 97920108 A C ZNF518A RNA 0.11 TCGA-AD-A5EJ-01 10 97923329 97923329 T - ZNF518A RNA 0.26 TCGA-AD-A5EJ-01 11 101362287 101362287 T - TRPC6 Frame_Shift_Del p.K376Nfs*3 0.16 TCGA-AD-A5EJ-01 11 101833372 101833373 - A KIAA1377 Frame_Shift_Ins p.Q538Tfs*5 0.15 TCGA-AD-A5EJ-01 11 102980268 102980268 C - DYNC2H1 5'Flank 0.13 TCGA-AD-A5EJ-01 11 104874011 104874011 T - CASP5 Frame_Shift_Del p.N191Ifs*8 0.43 TCGA-AD-A5EJ-01 11 10524411 10524411 C T AMPD3 Silent p.T671T 0.27 TCGA-AD-A5EJ-01 11 107403112 107403112 G A ALKBH8 Silent p.H264H 0.30 TCGA-AD-A5EJ-01 11 107832982 107832982 A - RAB39A Frame_Shift_Del p.K181Rfs*29 0.18 TCGA-AD-A5EJ-01 11 108044069 108044069 T - NPAT Frame_Shift_Del p.S548Vfs*11 0.30 TCGA-AD-A5EJ-01 11 109296164 109296164 G C C11orf87 3'UTR 0.30 TCGA-AD-A5EJ-01 11 1095682 1095682 C A MUC2 Missense_Mutation p.L2065M 0.27 unknown(0) TCGA-AD-A5EJ-01 11 113270610 113270610 C T ANKK1 Missense_Mutation p.A640V 0.35 tolerated(0.3) benign(0.001) TCGA-AD-A5EJ-01 11 116766979 116766979 A - SIK3 Frame_Shift_Del p.F227Lfs*9 0.23 TCGA-AD-A5EJ-01 11 117097903 117097903 C T PCSK7 Missense_Mutation p.V247M 0.36 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 11 117152961 117152961 C A RNF214 Missense_Mutation p.L563M 0.39 tolerated(0.2) probably_damaging(0.996) TCGA-AD-A5EJ-01 11 118772510 118772510 C G BCL9L Missense_Mutation p.G648R 0.32 possibly_damaging(0.786) TCGA-AD-A5EJ-01 11 119044363 119044363 G A NLRX1 Silent p.Q135Q 0.29 TCGA-AD-A5EJ-01 11 120198341 120198341 C - TMEM136 Frame_Shift_Del p.H87Tfs*37 0.16 TCGA-AD-A5EJ-01 11 121058631 121058632 - G TECTA Frame_Shift_Ins p.D2032Gfs*22 0.11 TCGA-AD-A5EJ-01 11 123676690 123676690 G A OR6M1 Missense_Mutation p.A123V 0.24 deleterious(0) probably_damaging(0.948) TCGA-AD-A5EJ-01 11 123847615 123847615 C - OR10S1 Frame_Shift_Del p.V262Cfs*32 0.22 TCGA-AD-A5EJ-01 11 124739422 124739423 - C ROBO3 Frame_Shift_Ins p.R191Pfs*61 0.30 TCGA-AD-A5EJ-01 11 124747075 124747075 C T ROBO3 Missense_Mutation p.P933L 0.10 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 11 124747173 124747173 G A ROBO3 Silent p.P938P 0.40 TCGA-AD-A5EJ-01 11 124789948 124789948 C T HEPACAM 3'UTR 0.13 TCGA-AD-A5EJ-01 11 124805857 124805857 G A HEPACAM Missense_Mutation p.R16C 0.31 tolerated(0.07) benign(0) TCGA-AD-A5EJ-01 11 124947134 124947134 G A SLC37A2 Silent p.L50L 0.36 TCGA-AD-A5EJ-01 11 125887269 125887269 A G CDON Silent p.R214R 0.10 TCGA-AD-A5EJ-01 11 126080817 126080819 ACC - RPUSD4 In_Frame_Del p.V108del 0.34 TCGA-AD-A5EJ-01 11 126135710 126135710 C T SRPR Missense_Mutation p.V354M 0.36 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 11 126139243 126139243 T G FOXRED1 Intron 0.15 TCGA-AD-A5EJ-01 11 1263882 1263882 C T MUC5B Silent p.A1924A 0.19 TCGA-AD-A5EJ-01 11 1268097 1268097 G A MUC5B Silent p.T3329T 0.31 TCGA-AD-A5EJ-01 11 12901294 12901294 G A TEAD1 Missense_Mutation p.A124T 0.32 tolerated(0.5) benign(0.012) TCGA-AD-A5EJ-01 11 1309881 1309881 G A TOLLIP Silent p.G164G 0.10 TCGA-AD-A5EJ-01 11 131781469 131781469 C T NTM Missense_Mutation p.R32C 0.32 deleterious(0) probably_damaging(0.988) TCGA-AD-A5EJ-01 11 132812960 132812960 G A OPCML Missense_Mutation p.P10S 0.18 tolerated(0.41) benign(0.067) TCGA-AD-A5EJ-01 11 134118274 134118275 - A THYN1 3'UTR 0.16 TCGA-AD-A5EJ-01 11 134131678 134131678 C T ACAD8 Missense_Mutation p.A329V 0.12 deleterious(0) benign(0.147) TCGA-AD-A5EJ-01 11 16847919 16847919 G A PLEKHA7 Missense_Mutation p.P364L 0.37 tolerated(0.26) benign(0.002) TCGA-AD-A5EJ-01 11 17631824 17631824 C A OTOG Silent p.T1671T 0.17 TCGA-AD-A5EJ-01 11 17803379 17803379 G A KCNC1 3'UTR 0.50 TCGA-AD-A5EJ-01 11 18266893 18266893 A G SAA2 3'UTR 0.15 TCGA-AD-A5EJ-01 11 19914121 19914121 G A NAV2 Silent p.P327P 0.45 TCGA-AD-A5EJ-01 11 20486091 20486091 C T PRMT3 Missense_Mutation p.T449M 0.40 probably_damaging(1) TCGA-AD-A5EJ-01 11 2154242 2154242 G - IGF2 Frame_Shift_Del p.P229Qfs*27 0.26 TCGA-AD-A5EJ-01 11 2181019 2181019 G T INS 3'UTR 0.04 TCGA-AD-A5EJ-01 11 3128630 3128631 TC - OSBPL5 Frame_Shift_Del p.N308Pfs*2 0.25 TCGA-AD-A5EJ-01 11 31805171 31805171 C T ELP4 3'UTR 0.64 TCGA-AD-A5EJ-01 11 32461333 32461333 A G WT1 5'Flank 0.38 TCGA-AD-A5EJ-01 11 32461418 32461418 G T WT1 5'Flank 0.12 TCGA-AD-A5EJ-01 11 33777399 33777400 - A FBXO3 Frame_Shift_Ins p.C199Lfs*22 0.24 TCGA-AD-A5EJ-01 11 3392276 3392276 A G ZNF195 Missense_Mutation p.L52P 0.22 deleterious(0.05) probably_damaging(0.944) TCGA-AD-A5EJ-01 11 40136703 40136703 G A LRRC4C Silent p.S380S 0.37 TCGA-AD-A5EJ-01 11 44228394 44228394 A - EXT2 Frame_Shift_Del p.N550Tfs*3 0.31 TCGA-AD-A5EJ-01 11 45955607 45955607 G - PHF21A Frame_Shift_Del p.P652Lfs*104 0.32 TCGA-AD-A5EJ-01 11 47591388 47591388 A G PTPMT1 Missense_Mutation p.H131R 0.10 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 11 47600654 47600654 C T NDUFS3 Missense_Mutation p.A4V 0.31 tolerated(0.07) benign(0.053) TCGA-AD-A5EJ-01 11 47640350 47640350 G A MTCH2 3'UTR 0.33 TCGA-AD-A5EJ-01 11 5322863 5322863 G A OR51B4 Missense_Mutation p.A105V 0.34 deleterious(0) benign(0.196) TCGA-AD-A5EJ-01 11 55111214 55111214 T C OR4A16 Missense_Mutation p.Y180H 0.29 deleterious_low_confidence(0.01) benign(0.443) TCGA-AD-A5EJ-01 11 5529933 5529933 C T UBQLN3 Missense_Mutation p.A286T 0.20 tolerated(0.31) benign(0.004) TCGA-AD-A5EJ-01 11 558069 558069 G - C11orf35 Intron 0.27 TCGA-AD-A5EJ-01 11 5631649 5631649 C T TRIM6 Intron 0.37 TCGA-AD-A5EJ-01 11 56431737 56431737 C A OR5AR1 Silent p.T192T 0.23 TCGA-AD-A5EJ-01 11 56467865 56467865 T C OR9G1 Translation_Start_Site p.M1? 0.12 deleterious(0) probably_damaging(0.986) TCGA-AD-A5EJ-01 11 57075876 57075876 C T TNKS1BP1 Missense_Mutation p.G1437R 0.42 tolerated(0.06) probably_damaging(0.968) TCGA-AD-A5EJ-01 11 59418247 59418247 T G PATL1 Missense_Mutation p.T522P 0.21 deleterious(0.05) probably_damaging(0.995) TCGA-AD-A5EJ-01 11 59604665 59604665 G - GIF Frame_Shift_Del p.Q285Rfs*34 0.19 TCGA-AD-A5EJ-01 11 60229781 60229781 C T MS4A1 5'UTR 0.42 TCGA-AD-A5EJ-01 11 60885660 60885660 G A CD5 Silent p.R36R 0.26 TCGA-AD-A5EJ-01 11 61018691 61018691 C T PGA5 Missense_Mutation p.R369C 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AD-A5EJ-01 11 61291959 61291959 A G SYT7 Missense_Mutation p.V298A 0.33 deleterious(0.02) benign(0.398) TCGA-AD-A5EJ-01 11 61646061 61646061 C T FADS3 Missense_Mutation p.A224T 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-AD-A5EJ-01 11 61912488 61912488 G A INCENP Missense_Mutation p.R547Q 0.39 deleterious(0.01) unknown(0) TCGA-AD-A5EJ-01 11 62189810 62189810 C T SCGB1A1 Missense_Mutation p.A58V 0.28 deleterious(0) probably_damaging(0.918) TCGA-AD-A5EJ-01 11 6243681 6243681 A G FAM160A2 Silent p.S394S 0.04 TCGA-AD-A5EJ-01 11 63313709 63313709 A - RARRES3 Frame_Shift_Del p.A162Rfs*56 0.39 TCGA-AD-A5EJ-01 11 63320492 63320492 C T HRASLS2 Missense_Mutation p.A145T 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-AD-A5EJ-01 11 63676544 63676544 G A MARK2 Silent p.L734L 0.19 TCGA-AD-A5EJ-01 11 63886417 63886417 T - FLRT1 3'UTR 0.41 TCGA-AD-A5EJ-01 11 64012138 64012138 C T PPP1R14B 3'UTR 0.22 TCGA-AD-A5EJ-01 11 64509577 64509577 G A RASGRP2 Silent p.S27S 0.41 TCGA-AD-A5EJ-01 11 64669762 64669762 G A ATG2A Missense_Mutation p.R1292C 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-AD-A5EJ-01 11 64679872 64679872 G A ATG2A Silent p.G283G 0.33 TCGA-AD-A5EJ-01 11 6478192 6478192 G A TRIM3 Missense_Mutation p.A255V 0.16 tolerated(0.09) benign(0.004) TCGA-AD-A5EJ-01 11 65304472 65304472 C - SCYL1 Frame_Shift_Del p.T613Pfs*60 0.23 TCGA-AD-A5EJ-01 11 65350549 65350549 G T EHBP1L1 Silent p.G802G 0.30 TCGA-AD-A5EJ-01 11 6554964 6554964 A G DNHD1 Silent p.V853V 0.31 TCGA-AD-A5EJ-01 11 65824768 65824768 T G SF3B2 Silent p.T233T 0.27 TCGA-AD-A5EJ-01 11 66034306 66034306 C T KLC2 Intron 0.23 TCGA-AD-A5EJ-01 11 66134944 66134944 G T SLC29A2 Missense_Mutation p.L242I 0.10 tolerated(0.54) probably_damaging(0.999) TCGA-AD-A5EJ-01 11 66311212 66311212 A G ZDHHC24 Silent p.A174A 0.28 TCGA-AD-A5EJ-01 11 6637978 6637978 C G TPP1 Missense_Mutation p.G267A 0.32 tolerated(0.13) benign(0.204) TCGA-AD-A5EJ-01 11 6643926 6643926 G T DCHS1 Missense_Mutation p.P2994H 0.41 deleterious(0.03) benign(0.099) TCGA-AD-A5EJ-01 11 67196651 67196651 G A RPS6KB2 Silent p.E60E 0.23 TCGA-AD-A5EJ-01 11 68030116 68030116 G A C11orf24 Missense_Mutation p.A116V 0.18 tolerated(0.32) unknown(0) TCGA-AD-A5EJ-01 11 68204387 68204387 C T LRP5 Missense_Mutation p.A1344V 0.46 tolerated(0.16) benign(0.066) TCGA-AD-A5EJ-01 11 68701288 68701288 G T IGHMBP2 Nonsense_Mutation p.E482* 0.26 TCGA-AD-A5EJ-01 11 71714512 71714512 G A NUMA1 3'UTR 0.17 TCGA-AD-A5EJ-01 11 73021527 73021527 C - ARHGEF17 Frame_Shift_Del p.P617Lfs*10 0.22 TCGA-AD-A5EJ-01 11 74904425 74904425 T C SLCO2B1 Missense_Mutation p.I413T 0.16 deleterious(0) probably_damaging(0.932) TCGA-AD-A5EJ-01 11 74992133 74992135 CTC - ARRB1 In_Frame_Del p.E156del 0.25 TCGA-AD-A5EJ-01 11 75279852 75279852 T C SERPINH1 Silent p.G233G 0.38 TCGA-AD-A5EJ-01 11 75501741 75501741 G A DGAT2 Missense_Mutation p.V132M 0.05 tolerated(0.14) benign(0.314) TCGA-AD-A5EJ-01 11 772511 772511 G A PDDC1 Silent p.C122C 0.32 TCGA-AD-A5EJ-01 11 8123060 8123060 G A TUB Missense_Mutation p.R527Q 0.39 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 11 83962306 83962306 G A DLG2 Missense_Mutation p.T183I 0.30 deleterious(0) probably_damaging(0.994) TCGA-AD-A5EJ-01 11 85365238 85365238 G T TMEM126A Missense_Mutation p.G73V 0.36 tolerated(1) benign(0) TCGA-AD-A5EJ-01 11 86158135 86158135 G A ME3 Missense_Mutation p.T451M 0.29 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 11 8640992 8640992 T C TRIM66 Missense_Mutation p.T1133A 0.09 tolerated(0.78) benign(0.075) TCGA-AD-A5EJ-01 11 8671319 8671319 G - TRIM66 Frame_Shift_Del p.P42Hfs*13 0.30 TCGA-AD-A5EJ-01 11 88911521 88911521 T - TYR Frame_Shift_Del p.F135Lfs*6 0.25 TCGA-AD-A5EJ-01 11 8941056 8941056 T - AKIP1 3'UTR 0.27 TCGA-AD-A5EJ-01 11 89447443 89447443 C G TRIM77 Missense_Mutation p.H197Q 0.36 deleterious(0.01) possibly_damaging(0.732) TCGA-AD-A5EJ-01 11 9304992 9304992 T - TMEM41B Frame_Shift_Del p.K285Nfs*2 0.29 TCGA-AD-A5EJ-01 11 93090126 93090126 C T CCDC67 Nonsense_Mutation p.R72* 0.28 TCGA-AD-A5EJ-01 11 93141578 93141578 A G CCDC67 Missense_Mutation p.E503G 0.31 tolerated(0.13) benign(0.005) TCGA-AD-A5EJ-01 11 93463265 93463267 AAC - KIAA1731 In_Frame_Del p.Q2574del 0.30 TCGA-AD-A5EJ-01 11 94602613 94602613 G A AMOTL1 Silent p.A913A 0.44 TCGA-AD-A5EJ-01 11 96124517 96124517 G A JRKL Missense_Mutation p.R235H 0.41 tolerated(0.08) benign(0.126) TCGA-AD-A5EJ-01 12 100463852 100463852 C T UHRF1BP1L Intron 0.20 TCGA-AD-A5EJ-01 12 100550559 100550559 G A AC010203.1 3'Flank 0.27 TCGA-AD-A5EJ-01 12 100707248 100707248 C T SCYL2 Missense_Mutation p.R301C 0.26 deleterious(0.01) benign(0.173) TCGA-AD-A5EJ-01 12 10206877 10206877 C T CLEC9A Silent p.C33C 0.24 TCGA-AD-A5EJ-01 12 103234262 103234262 A T PAH Missense_Mutation p.S411T 0.28 tolerated(0.22) benign(0.017) TCGA-AD-A5EJ-01 12 104151951 104151951 G A STAB2 Missense_Mutation p.V2331M 0.11 deleterious(0) possibly_damaging(0.643) TCGA-AD-A5EJ-01 12 104336397 104336397 T C HSP90B1 Silent p.G489G 0.18 TCGA-AD-A5EJ-01 12 105322353 105322353 A G SLC41A2 5'UTR 0.31 TCGA-AD-A5EJ-01 12 105589059 105589059 T - APPL2 Frame_Shift_Del p.K413Nfs*11 0.28 TCGA-AD-A5EJ-01 12 10569304 10569304 A G KLRC3 Silent p.H183H 0.16 TCGA-AD-A5EJ-01 12 108043022 108043022 C T BTBD11 Silent p.L988L 0.16 TCGA-AD-A5EJ-01 12 108145468 108145468 C A PRDM4 Missense_Mutation p.A284S 0.21 tolerated(0.48) benign(0.003) TCGA-AD-A5EJ-01 12 10954990 10954990 G A TAS2R7 Silent p.C60C 0.33 TCGA-AD-A5EJ-01 12 10962722 10962722 T G TAS2R9 5'UTR 0.08 TCGA-AD-A5EJ-01 12 111066573 111066573 T C TCTN1 Silent p.Y158Y 0.40 TCGA-AD-A5EJ-01 12 111772366 111772366 G T CUX2 Missense_Mutation p.E1016D 0.10 tolerated(0.18) benign(0.014) TCGA-AD-A5EJ-01 12 111951255 111951255 T C ATXN2 Silent p.E648E 0.32 TCGA-AD-A5EJ-01 12 112499173 112499173 C T NAA25 Missense_Mutation p.G390E 0.37 tolerated(1) benign(0.007) TCGA-AD-A5EJ-01 12 112589677 112589677 C T TRAFD1 Missense_Mutation p.P451L 0.10 deleterious(0.05) benign(0.031) TCGA-AD-A5EJ-01 12 112677725 112677725 C T HECTD4 Missense_Mutation p.A1543T 0.06 probably_damaging(0.966) TCGA-AD-A5EJ-01 12 113542005 113542005 G A RASAL1 Silent p.D644D 0.30 TCGA-AD-A5EJ-01 12 113553542 113553542 A G RASAL1 Missense_Mutation p.C301R 0.05 deleterious(0.04) possibly_damaging(0.726) TCGA-AD-A5EJ-01 12 114793694 114793694 C T TBX5 Silent p.T400T 0.20 TCGA-AD-A5EJ-01 12 116440828 116440828 G A MED13L Missense_Mutation p.A850V 0.18 tolerated(0.43) unknown(0) TCGA-AD-A5EJ-01 12 117178869 117178869 G T RNFT2 Missense_Mutation p.S18I 0.38 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AD-A5EJ-01 12 117909045 117909045 G A KSR2 Missense_Mutation p.T888I 0.15 deleterious(0.01) benign(0.013) TCGA-AD-A5EJ-01 12 118511645 118511645 G A VSIG10 Missense_Mutation p.R360C 0.46 deleterious(0) probably_damaging(0.932) TCGA-AD-A5EJ-01 12 118520098 118520098 C T VSIG10 Nonsense_Mutation p.W166* 0.33 TCGA-AD-A5EJ-01 12 120567150 120567150 A G GCN1L1 Missense_Mutation p.V2607A 0.35 benign(0.001) TCGA-AD-A5EJ-01 12 121431421 121431421 G A HNF1A Missense_Mutation p.A209T 0.33 deleterious(0.02) probably_damaging(0.938) TCGA-AD-A5EJ-01 12 122018740 122018740 T - KDM2B Frame_Shift_Del p.K26Rfs*81 0.33 TCGA-AD-A5EJ-01 12 122217382 122217382 C T TMEM120B 3'UTR 0.50 TCGA-AD-A5EJ-01 12 122992929 122992929 G T RSRC2 Missense_Mutation p.P291T 0.21 deleterious(0) unknown(0) TCGA-AD-A5EJ-01 12 123186647 123186647 C T HCAR2 3'UTR 0.31 TCGA-AD-A5EJ-01 12 123187050 123187050 A C HCAR2 Missense_Mutation p.S261A 0.13 tolerated(0.88) benign(0.001) TCGA-AD-A5EJ-01 12 123419905 123419905 G A ABCB9 Missense_Mutation p.T606I 0.27 tolerated(0.06) benign(0.094) TCGA-AD-A5EJ-01 12 123665710 123665710 C A MPHOSPH9 Missense_Mutation p.K611N 0.07 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 12 123751766 123751766 C T CDK2AP1 Missense_Mutation p.S40N 0.08 tolerated(0.6) benign(0.02) TCGA-AD-A5EJ-01 12 123879614 123879614 G A SETD8 Missense_Mutation p.A104T 0.44 tolerated(0.44) benign(0.003) TCGA-AD-A5EJ-01 12 124289545 124289545 G T DNAH10 Missense_Mutation p.W864L 0.31 possibly_damaging(0.882) TCGA-AD-A5EJ-01 12 124399418 124399418 C - DNAH10 Frame_Shift_Del p.D3416Mfs*54 0.23 TCGA-AD-A5EJ-01 12 124421639 124421639 A G CCDC92 Missense_Mutation p.V321A 0.35 tolerated_low_confidence(0.14) benign(0.006) TCGA-AD-A5EJ-01 12 125396267 125396267 C - UBC Frame_Shift_Del p.G684Vfs*? 0.30 TCGA-AD-A5EJ-01 12 13153100 13153100 G A HEBP1 5'UTR 0.43 TCGA-AD-A5EJ-01 12 132445702 132445702 A T EP400 Missense_Mutation p.I180F 0.17 unknown(0) TCGA-AD-A5EJ-01 12 133151083 133151083 C T FBRSL1 Missense_Mutation p.P588L 0.36 deleterious(0) probably_damaging(0.997) TCGA-AD-A5EJ-01 12 14650946 14650946 G A ATF7IP Missense_Mutation p.R1251H 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AD-A5EJ-01 12 14796622 14796622 A G GUCY2C Missense_Mutation p.S606P 0.30 deleterious(0) possibly_damaging(0.87) TCGA-AD-A5EJ-01 12 14946844 14946844 T C WBP11 Missense_Mutation p.H245R 0.40 tolerated_low_confidence(0.1) unknown(0) TCGA-AD-A5EJ-01 12 15132137 15132137 G A PDE6H Missense_Mutation p.M53I 0.26 deleterious_low_confidence(0) possibly_damaging(0.484) TCGA-AD-A5EJ-01 12 19475579 19475579 G A PLEKHA5 Missense_Mutation p.R809Q 0.21 tolerated(0.09) probably_damaging(0.997) TCGA-AD-A5EJ-01 12 19506935 19506935 C T PLEKHA5 Missense_Mutation p.T1046M 0.22 tolerated(0.17) benign(0.018) TCGA-AD-A5EJ-01 12 2017149 2017149 C T CACNA2D4 Missense_Mutation p.V181M 0.34 deleterious(0.02) benign(0.327) TCGA-AD-A5EJ-01 12 21028266 21028267 - T SLCO1B3 Frame_Shift_Ins p.P280Afs*6 0.26 TCGA-AD-A5EJ-01 12 21623051 21623051 A G PYROXD1 3'UTR 0.33 TCGA-AD-A5EJ-01 12 21721878 21721878 G A GYS2 Silent p.S248S 0.32 TCGA-AD-A5EJ-01 12 21791390 21791390 C A LDHB Missense_Mutation p.G204C 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-AD-A5EJ-01 12 21998683 21998683 G A ABCC9 Missense_Mutation p.R984C 0.29 tolerated(0.21) benign(0) TCGA-AD-A5EJ-01 12 22837437 22837437 A T ETNK1 Silent p.G411G 0.28 TCGA-AD-A5EJ-01 12 2622093 2622093 G A CACNA1C Missense_Mutation p.E445K 0.11 deleterious(0) probably_damaging(0.997) TCGA-AD-A5EJ-01 12 26383798 26383798 G T SSPN Missense_Mutation p.R174M 0.39 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 12 26774090 26774090 T C ITPR2 Missense_Mutation p.E1143G 0.18 tolerated(0.12) benign(0) TCGA-AD-A5EJ-01 12 27152592 27152592 G T TM7SF3 Silent p.S88S 0.26 TCGA-AD-A5EJ-01 12 27553583 27553583 C A ARNTL2 Missense_Mutation p.L346I 0.35 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 12 2789726 2789726 C - CACNA1C Intron 0.21 TCGA-AD-A5EJ-01 12 305939 305939 G A SLC6A12 Silent p.S395S 0.31 TCGA-AD-A5EJ-01 12 32530543 32530544 - A BICD1 Frame_Shift_Ins p.P972Afs*20 0.26 TCGA-AD-A5EJ-01 12 32945242 32945242 G T PKP2 3'UTR 0.26 TCGA-AD-A5EJ-01 12 33003710 33003710 T - PKP2 Frame_Shift_Del p.K456Nfs*3 0.29 TCGA-AD-A5EJ-01 12 33592459 33592459 G A SYT10 5'UTR 0.44 TCGA-AD-A5EJ-01 12 351803 351803 C T SLC6A13 Missense_Mutation p.G152D 0.20 deleterious(0.02) benign(0.142) TCGA-AD-A5EJ-01 12 3747362 3747362 C T EFCAB4B Silent p.P510P 0.50 TCGA-AD-A5EJ-01 12 39047733 39047733 G A CPNE8 Missense_Mutation p.A549V 0.41 tolerated(0.22) benign(0.186) TCGA-AD-A5EJ-01 12 40925451 40925451 T G MUC19 Intron 0.38 TCGA-AD-A5EJ-01 12 46318686 46318686 C T SCAF11 Missense_Mutation p.R1244H 0.33 tolerated(0.29) benign(0.021) TCGA-AD-A5EJ-01 12 4634441 4634441 T - C12orf4 Frame_Shift_Del p.N236Tfs*22 0.25 TCGA-AD-A5EJ-01 12 47170785 47170785 C T SLC38A4 Missense_Mutation p.R359Q 0.29 tolerated(0.27) probably_damaging(0.989) TCGA-AD-A5EJ-01 12 47629075 47629075 C T PCED1B Missense_Mutation p.R77C 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-AD-A5EJ-01 12 47629507 47629507 G A PCED1B Missense_Mutation p.A221T 0.14 tolerated(0.06) benign(0.072) TCGA-AD-A5EJ-01 12 48393705 48393705 T C COL2A1 Missense_Mutation p.S97G 0.07 unknown(0) TCGA-AD-A5EJ-01 12 49255823 49255823 C T RND1 Missense_Mutation p.R96H 0.21 deleterious(0.02) probably_damaging(0.939) TCGA-AD-A5EJ-01 12 49424139 49424139 G A KMT2D Silent p.G4641G 0.29 TCGA-AD-A5EJ-01 12 49445897 49445897 C T KMT2D Silent p.P523P 0.35 TCGA-AD-A5EJ-01 12 49495298 49495298 A G LMBR1L Missense_Mutation p.L322P 0.21 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 12 49742875 49742875 C - DNAJC22 Frame_Shift_Del p.P75Lfs*2 0.25 TCGA-AD-A5EJ-01 12 49948128 49948128 G A KCNH3 Missense_Mutation p.D643N 0.28 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 12 50452821 50452821 C T ASIC1 Missense_Mutation p.T91M 0.32 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 12 51511531 51511531 C T TFCP2 Splice_Site p.X92_splice 0.33 TCGA-AD-A5EJ-01 12 5155012 5155012 G - KCNA5 Frame_Shift_Del p.T569Pfs*15 0.27 TCGA-AD-A5EJ-01 12 52162722 52162722 G A SCN8A Missense_Mutation p.G992E 0.41 tolerated(0.06) possibly_damaging(0.881) TCGA-AD-A5EJ-01 12 52200775 52200775 A G SCN8A Silent p.P1835P 0.25 TCGA-AD-A5EJ-01 12 52374855 52374855 G T ACVR1B Missense_Mutation p.G228V 0.34 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 12 52779074 52779075 - C KRT84 Frame_Shift_Ins p.A99Gfs*2 0.25 TCGA-AD-A5EJ-01 12 52886684 52886684 C T KRT6A Missense_Mutation p.G97R 0.36 tolerated(0.16) unknown(0) TCGA-AD-A5EJ-01 12 52943836 52943836 G A KRT71 Silent p.D211D 0.32 TCGA-AD-A5EJ-01 12 53069310 53069310 G A KRT1 Silent p.S534S 0.48 TCGA-AD-A5EJ-01 12 53170636 53170636 C T KRT76 Missense_Mutation p.G147D 0.18 tolerated(0.08) unknown(0) TCGA-AD-A5EJ-01 12 53232820 53232820 C T KRT78 3'UTR 0.40 TCGA-AD-A5EJ-01 12 53298714 53298714 G - KRT8 Frame_Shift_Del p.R46Gfs*56 0.19 TCGA-AD-A5EJ-01 12 53666626 53666626 G T ESPL1 Missense_Mutation p.E497D 0.37 tolerated(0.33) benign(0.007) TCGA-AD-A5EJ-01 12 53898978 53898978 G A TARBP2 Missense_Mutation p.V225M 0.37 deleterious(0.03) possibly_damaging(0.642) TCGA-AD-A5EJ-01 12 54338915 54338915 C T HOXC13 Missense_Mutation p.R290C 0.47 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 12 56547745 56547745 C A MYL6B Missense_Mutation p.P15T 0.12 tolerated_low_confidence(0.09) unknown(0) TCGA-AD-A5EJ-01 12 57113275 57113275 G A NACA Intron 0.36 TCGA-AD-A5EJ-01 12 57575039 57575039 G A LRP1 Missense_Mutation p.G1876D 0.20 probably_damaging(1) TCGA-AD-A5EJ-01 12 57866375 57866375 G A ARHGAP9 Silent p.D707D 0.40 TCGA-AD-A5EJ-01 12 57920946 57920946 T G MBD6 Missense_Mutation p.L673R 0.35 deleterious_low_confidence(0) unknown(0) TCGA-AD-A5EJ-01 12 58114782 58114782 G T OS9 3'UTR 0.32 TCGA-AD-A5EJ-01 12 6062718 6062718 A G VWF Missense_Mutation p.C2644R 0.38 deleterious(0) probably_damaging(0.951) TCGA-AD-A5EJ-01 12 6421479 6421479 C A PLEKHG6 Silent p.A29A 0.06 TCGA-AD-A5EJ-01 12 64671499 64671499 C T C12orf56 Silent p.V305V 0.19 TCGA-AD-A5EJ-01 12 64812754 64812755 - T XPOT Frame_Shift_Ins p.D127* 0.27 TCGA-AD-A5EJ-01 12 65471603 65471603 C T WIF1 Missense_Mutation p.R107H 0.19 tolerated(0.1) benign(0.021) TCGA-AD-A5EJ-01 12 65857151 65857151 A T MSRB3 3'UTR 0.19 TCGA-AD-A5EJ-01 12 6666187 6666188 - A NOP2 Frame_Shift_Ins p.R837Mfs*13 0.26 TCGA-AD-A5EJ-01 12 66725128 66725130 CTC - HELB In_Frame_Del p.S958del 0.21 TCGA-AD-A5EJ-01 12 6729143 6729143 G T LPAR5 3'UTR 0.30 TCGA-AD-A5EJ-01 12 6729407 6729407 G A LPAR5 Silent p.A336A 0.36 TCGA-AD-A5EJ-01 12 674585 674585 G - NINJ2 Intron 0.22 TCGA-AD-A5EJ-01 12 69084382 69084382 G A NUP107 Intron 0.29 TCGA-AD-A5EJ-01 12 6933309 6933309 A G GPR162 Missense_Mutation p.D82G 0.39 tolerated(0.06) benign(0.022) TCGA-AD-A5EJ-01 12 6973264 6973264 A C USP5 Missense_Mutation p.S717R 0.30 tolerated(0.33) benign(0.384) TCGA-AD-A5EJ-01 12 69982016 69982016 G A CCT2 Silent p.A140A 0.24 TCGA-AD-A5EJ-01 12 70740047 70740047 C A CNOT2 Silent p.T493T 0.38 TCGA-AD-A5EJ-01 12 71946867 71946867 A G LGR5 Missense_Mutation p.N148S 0.30 deleterious(0) probably_damaging(0.994) TCGA-AD-A5EJ-01 12 72666968 72666968 C T TRHDE Missense_Mutation p.T137M 0.26 deleterious(0.01) possibly_damaging(0.7) TCGA-AD-A5EJ-01 12 7636189 7636189 A C CD163 Missense_Mutation p.C954W 0.19 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 12 7639500 7639500 C A CD163 Silent p.V711V 0.17 TCGA-AD-A5EJ-01 12 76740040 76740040 T C BBS10 Silent p.P575P 0.17 TCGA-AD-A5EJ-01 12 79679573 79679573 C T SYT1 Missense_Mutation p.P58L 0.15 tolerated(0.12) benign(0.008) TCGA-AD-A5EJ-01 12 80761990 80761990 G A OTOGL Silent p.Q2163Q 0.14 TCGA-AD-A5EJ-01 12 81537007 81537007 G A ACSS3 Missense_Mutation p.G301D 0.33 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 12 86383326 86383326 C A MGAT4C 5'UTR 0.28 TCGA-AD-A5EJ-01 12 8666271 8666271 A - CLEC4D 5'UTR 0.36 TCGA-AD-A5EJ-01 12 9086489 9086489 G A PHC1 Missense_Mutation p.R641H 0.34 deleterious(0) unknown(0) TCGA-AD-A5EJ-01 12 9223092 9223092 C T A2M Missense_Mutation p.V1396M 0.29 deleterious(0) probably_damaging(0.989) TCGA-AD-A5EJ-01 12 96260938 96260938 T - CCDC38 Frame_Shift_Del p.K536Nfs*12 0.30 TCGA-AD-A5EJ-01 12 99043371 99043371 T C APAF1 Silent p.G145G 0.46 TCGA-AD-A5EJ-01 12 9905997 9905997 G A CD69 3'UTR 0.33 TCGA-AD-A5EJ-01 13 100617887 100617887 G A ZIC5 Missense_Mutation p.P579L 0.30 deleterious(0) probably_damaging(0.995) TCGA-AD-A5EJ-01 13 101717783 101717783 C T NALCN Missense_Mutation p.G1526D 0.39 tolerated(0.47) benign(0.005) TCGA-AD-A5EJ-01 13 101717877 101717877 G A NALCN Missense_Mutation p.R1495W 0.39 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 13 103292692 103292692 T - TPP2 Frame_Shift_Del p.F663Lfs*13 0.12 TCGA-AD-A5EJ-01 13 103514790 103514790 G T BIVM-ERCC5 Nonsense_Mutation p.G857* 0.35 TCGA-AD-A5EJ-01 13 111102134 111102134 G A COL4A2 Missense_Mutation p.G396E 0.24 benign(0.035) TCGA-AD-A5EJ-01 13 111287619 111287619 C A CARKD Intron 0.31 TCGA-AD-A5EJ-01 13 113210483 113210483 G A TUBGCP3 Nonsense_Mutation p.R202* 0.05 TCGA-AD-A5EJ-01 13 113738380 113738380 G A MCF2L Missense_Mutation p.R687K 0.10 deleterious(0) benign(0.143) TCGA-AD-A5EJ-01 13 113814421 113814421 A - PROZ Frame_Shift_Del p.E79Nfs*20 0.19 TCGA-AD-A5EJ-01 13 113826114 113826114 C A PROZ Missense_Mutation p.L322I 0.45 tolerated(0.32) benign(0.354) TCGA-AD-A5EJ-01 13 114290873 114290873 C T TFDP1 Silent p.D288D 0.45 TCGA-AD-A5EJ-01 13 20224276 20224276 G T MPHOSPH8 Missense_Mutation p.K484N 0.18 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-AD-A5EJ-01 13 20399261 20399261 T - ZMYM5 Frame_Shift_Del p.I456* 0.21 TCGA-AD-A5EJ-01 13 20426263 20426263 C T ZMYM5 Missense_Mutation p.G20R 0.07 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AD-A5EJ-01 13 21417174 21417174 C T XPO4 Missense_Mutation p.R196H 0.36 deleterious(0.01) possibly_damaging(0.513) TCGA-AD-A5EJ-01 13 22275368 22275368 G A FGF9 Missense_Mutation p.E141K 0.32 deleterious(0.03) probably_damaging(0.93) TCGA-AD-A5EJ-01 13 23913690 23913690 C A SACS Missense_Mutation p.R1442I 0.42 possibly_damaging(0.723) TCGA-AD-A5EJ-01 13 24200907 24200909 CCT - TNFRSF19 In_Frame_Del p.P144del 0.24 TCGA-AD-A5EJ-01 13 28901607 28901607 G T FLT1 Missense_Mutation p.L930I 0.26 tolerated(0.5) benign(0.168) TCGA-AD-A5EJ-01 13 28913379 28913379 G T FLT1 Missense_Mutation p.P805H 0.07 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 13 31233314 31233314 C T USPL1 Missense_Mutation p.P1034S 0.25 tolerated(0.09) benign(0.069) TCGA-AD-A5EJ-01 13 32783242 32783242 C T FRY Missense_Mutation p.A1424V 0.19 tolerated(0.28) possibly_damaging(0.895) TCGA-AD-A5EJ-01 13 32972589 32972590 - A BRCA2 Frame_Shift_Ins p.E3316Rfs*11 0.22 TCGA-AD-A5EJ-01 13 35685016 35685016 C T NBEA Missense_Mutation p.R635C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 13 36743067 36743067 G T SOHLH2 3'UTR 0.11 TCGA-AD-A5EJ-01 13 37453512 37453512 G A SMAD9 Silent p.H105H 0.31 TCGA-AD-A5EJ-01 13 46923419 46923419 A G KIAA0226L Splice_Site p.X544_splice 0.20 TCGA-AD-A5EJ-01 13 46946498 46946498 G T KIAA0226L Missense_Mutation p.P38H 0.21 deleterious(0) possibly_damaging(0.847) TCGA-AD-A5EJ-01 13 50489153 50489153 A T SPRYD7 3'UTR 0.23 TCGA-AD-A5EJ-01 13 51855338 51855338 A G FAM124A Silent p.P565P 0.14 TCGA-AD-A5EJ-01 13 51935472 51935472 G T SERPINE3 Missense_Mutation p.E353D 0.31 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 13 52598258 52598258 T - ALG11 Frame_Shift_Del p.L133* 0.20 TCGA-AD-A5EJ-01 13 52693487 52693487 G A NEK5 Missense_Mutation p.P61L 0.28 deleterious(0) probably_damaging(0.993) TCGA-AD-A5EJ-01 13 53010475 53010475 T A VPS36 Missense_Mutation p.S101C 0.36 deleterious(0) probably_damaging(0.982) TCGA-AD-A5EJ-01 13 58207522 58207523 - T PCDH17 Frame_Shift_Ins p.S283Qfs*6 0.13 TCGA-AD-A5EJ-01 13 58208231 58208231 C T PCDH17 Silent p.G517G 0.27 TCGA-AD-A5EJ-01 13 60545025 60545025 A G DIAPH3 Silent p.F640F 0.11 TCGA-AD-A5EJ-01 13 70370982 70370983 AA - KLHL1 Frame_Shift_Del p.F509Cfs*15 0.24 TCGA-AD-A5EJ-01 13 77672645 77672645 G A MYCBP2 Missense_Mutation p.R2844C 0.30 probably_damaging(0.994) TCGA-AD-A5EJ-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.13 TCGA-AD-A5EJ-01 13 93518563 93518563 T C GPC5 Silent p.D530D 0.12 TCGA-AD-A5EJ-01 13 96599320 96599320 T C UGGT2 Missense_Mutation p.I550V 0.45 tolerated(0.34) benign(0) TCGA-AD-A5EJ-01 13 96743584 96743584 G - HS6ST3 Frame_Shift_Del p.G158Afs*9 0.27 TCGA-AD-A5EJ-01 13 99112684 99112684 A G STK24 Missense_Mutation p.I367T 0.31 tolerated(0.23) benign(0.001) TCGA-AD-A5EJ-01 13 99532886 99532886 T G DOCK9 Missense_Mutation p.K929T 0.20 tolerated(0.11) probably_damaging(0.913) TCGA-AD-A5EJ-01 13 99554694 99554694 T C DOCK9 Missense_Mutation p.K410E 0.20 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 14 102493032 102493032 T C DYNC1H1 Missense_Mutation p.L2920P 0.11 probably_damaging(1) TCGA-AD-A5EJ-01 14 102549179 102549179 G A HSP90AA1 Intron 0.42 TCGA-AD-A5EJ-01 14 102550895 102550895 A - HSP90AA1 Frame_Shift_Del p.S452Qfs*48 0.17 TCGA-AD-A5EJ-01 14 102898442 102898443 - GAA TECPR2 In_Frame_Ins p.K471dup 0.26 TCGA-AD-A5EJ-01 14 103420582 103420582 C T CDC42BPB Missense_Mutation p.A1007T 0.36 tolerated(0.59) benign(0.002) TCGA-AD-A5EJ-01 14 105207521 105207522 - CC ADSSL1 Frame_Shift_Ins p.K291Pfs*24 0.28 TCGA-AD-A5EJ-01 14 105639449 105639449 G A NUDT14 Missense_Mutation p.A193V 0.35 tolerated(0.3) benign(0.013) TCGA-AD-A5EJ-01 14 105843103 105843103 A G PACS2 Splice_Site p.X268_splice 0.40 TCGA-AD-A5EJ-01 14 105843207 105843207 G A PACS2 Missense_Mutation p.G302S 0.34 deleterious(0.01) probably_damaging(0.977) TCGA-AD-A5EJ-01 14 106866671 106866671 C - IGHV3-38 Frame_Shift_Del p.G28Efs*10 0.24 TCGA-AD-A5EJ-01 14 20248897 20248897 G A OR4M1 Missense_Mutation p.R139H 0.22 tolerated(0.14) benign(0.032) TCGA-AD-A5EJ-01 14 20404482 20404482 C T OR4K1 Silent p.T219T 0.06 TCGA-AD-A5EJ-01 14 20898204 20898204 G A KLHL33 Silent p.L211L 0.17 TCGA-AD-A5EJ-01 14 20943241 20943241 C T PNP Missense_Mutation p.A161V 0.29 tolerated(0.07) benign(0.36) TCGA-AD-A5EJ-01 14 20979122 20979122 A - RNASE10 Frame_Shift_Del p.K165Nfs*11 0.24 TCGA-AD-A5EJ-01 14 21168090 21168091 TT - RNASE4 3'UTR 0.32 TCGA-AD-A5EJ-01 14 21681144 21681144 C T HNRNPC Silent p.Q179Q 0.15 TCGA-AD-A5EJ-01 14 21868426 21868426 T - CHD8 Frame_Shift_Del p.V1538* 0.26 TCGA-AD-A5EJ-01 14 21896151 21896151 C T CHD8 Missense_Mutation p.R493Q 0.32 tolerated(0.72) benign(0.003) TCGA-AD-A5EJ-01 14 23243595 23243595 A G SLC7A7 Missense_Mutation p.W405R 0.19 deleterious(0.03) possibly_damaging(0.873) TCGA-AD-A5EJ-01 14 23549722 23549722 C A ACIN1 Missense_Mutation p.E332D 0.34 benign(0.003) TCGA-AD-A5EJ-01 14 23828952 23828952 G A EFS Silent p.G245G 0.33 TCGA-AD-A5EJ-01 14 23891501 23891501 G A MYH7 Missense_Mutation p.R1045C 0.33 deleterious(0.03) benign(0.203) TCGA-AD-A5EJ-01 14 24529963 24529963 G A LRRC16B Missense_Mutation p.A730T 0.33 tolerated(0.9) probably_damaging(0.991) TCGA-AD-A5EJ-01 14 24635419 24635419 C A IRF9 3'UTR 0.33 TCGA-AD-A5EJ-01 14 31856515 31856515 A - HEATR5A Frame_Shift_Del p.S41Lfs*4 0.15 TCGA-AD-A5EJ-01 14 32560579 32560579 T C ARHGAP5 Missense_Mutation p.I235T 0.21 deleterious(0) benign(0.008) TCGA-AD-A5EJ-01 14 32624038 32624038 C T ARHGAP5 Missense_Mutation p.P1465S 0.33 tolerated_low_confidence(0.52) benign(0.048) TCGA-AD-A5EJ-01 14 36103851 36103851 C T RALGAPA1 Missense_Mutation p.S1469N 0.23 tolerated(1) benign(0.027) TCGA-AD-A5EJ-01 14 36219760 36219760 C T RALGAPA1 Nonsense_Mutation p.W313* 0.37 TCGA-AD-A5EJ-01 14 36784114 36784114 A - MBIP Frame_Shift_Del p.L86* 0.25 TCGA-AD-A5EJ-01 14 39868656 39868656 A - FBXO33 3'UTR 0.30 TCGA-AD-A5EJ-01 14 45605505 45605505 G A FANCM Missense_Mutation p.V91M 0.34 deleterious(0) possibly_damaging(0.482) TCGA-AD-A5EJ-01 14 45605621 45605621 C T FANCM Silent p.Y129Y 0.35 TCGA-AD-A5EJ-01 14 45645393 45645393 G A FANCM Missense_Mutation p.D1146N 0.33 tolerated(0.38) benign(0.04) TCGA-AD-A5EJ-01 14 45679654 45679654 T C MIS18BP1 Silent p.S1027S 0.36 TCGA-AD-A5EJ-01 14 50863892 50863892 C T CDKL1 5'Flank 0.22 TCGA-AD-A5EJ-01 14 51233102 51233102 C T NIN Missense_Mutation p.D520N 0.31 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 14 51464716 51464716 C T TRIM9 Intron 0.28 TCGA-AD-A5EJ-01 14 55203994 55203994 G A SAMD4A Missense_Mutation p.S323N 0.32 tolerated(0.05) possibly_damaging(0.886) TCGA-AD-A5EJ-01 14 56078886 56078886 A G KTN1 Silent p.K40K 0.11 TCGA-AD-A5EJ-01 14 56145162 56145162 G A KTN1 Silent p.T1316T 0.46 TCGA-AD-A5EJ-01 14 59835592 59835592 T - DAAM1 3'UTR 0.35 TCGA-AD-A5EJ-01 14 60712748 60712748 A - PPM1A Frame_Shift_Del p.K63Nfs*6 0.15 TCGA-AD-A5EJ-01 14 64488143 64488143 C T SYNE2 Silent p.L1754L 0.38 TCGA-AD-A5EJ-01 14 64488222 64488222 A G SYNE2 Missense_Mutation p.T1781A 0.40 probably_damaging(0.928) TCGA-AD-A5EJ-01 14 64727461 64727461 G T ESR2 Silent p.R220R 0.39 TCGA-AD-A5EJ-01 14 65406268 65406268 G T GPX2 Missense_Mutation p.R171S 0.26 deleterious(0.04) benign(0.043) TCGA-AD-A5EJ-01 14 68050497 68050497 C A PLEKHH1 Missense_Mutation p.P1156T 0.37 tolerated(0.13) benign(0.038) TCGA-AD-A5EJ-01 14 71543008 71543008 G A PCNX Missense_Mutation p.D1737N 0.34 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 14 72169049 72169049 A G SIPA1L1 Intron 0.25 TCGA-AD-A5EJ-01 14 73442355 73442355 C T ZFYVE1 Silent p.S570S 0.36 TCGA-AD-A5EJ-01 14 73718746 73718746 C T PAPLN Silent p.N261N 0.36 TCGA-AD-A5EJ-01 14 73732166 73732166 C - PAPLN Frame_Shift_Del p.P1046Qfs*32 0.35 TCGA-AD-A5EJ-01 14 73958723 73958723 G A HEATR4 Intron 0.04 TCGA-AD-A5EJ-01 14 74083828 74083828 G A ACOT6 5'UTR 0.31 TCGA-AD-A5EJ-01 14 74364814 74364814 T C ZNF410 Silent p.D160D 0.36 TCGA-AD-A5EJ-01 14 74763124 74763124 G A ABCD4 Nonsense_Mutation p.R152* 0.08 TCGA-AD-A5EJ-01 14 75473355 75473355 G A EIF2B2 Missense_Mutation p.A257T 0.32 deleterious(0) probably_damaging(0.989) TCGA-AD-A5EJ-01 14 77600035 77600035 C A ZDHHC22 Missense_Mutation p.Q261H 0.15 tolerated_low_confidence(0.06) benign(0) TCGA-AD-A5EJ-01 14 77924609 77924609 A G AHSA1 Missense_Mutation p.H26R 0.32 deleterious(0.04) possibly_damaging(0.717) TCGA-AD-A5EJ-01 14 77984451 77984451 G A SPTLC2 Missense_Mutation p.A500V 0.35 deleterious(0) possibly_damaging(0.9) TCGA-AD-A5EJ-01 14 80328136 80328136 C T NRXN3 Silent p.Y1005Y 0.18 TCGA-AD-A5EJ-01 14 90770634 90770634 C T NRDE2 Missense_Mutation p.R217H 0.28 tolerated(1) benign(0.002) TCGA-AD-A5EJ-01 14 93119367 93119367 G T RIN3 Missense_Mutation p.S658I 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 14 94088435 94088435 A - UNC79 Frame_Shift_Del p.K1443Nfs*23 0.25 TCGA-AD-A5EJ-01 14 94100953 94100954 - C UNC79 Frame_Shift_Ins p.H1760Pfs*2 0.22 TCGA-AD-A5EJ-01 14 94594917 94594917 C T IFI27L2 Missense_Mutation p.A45T 0.26 tolerated(0.18) possibly_damaging(0.798) TCGA-AD-A5EJ-01 14 94703914 94703914 A - PPP4R4 Frame_Shift_Del p.S250Vfs*7 0.25 TCGA-AD-A5EJ-01 14 95234748 95234748 C T GSC 3'UTR 0.26 TCGA-AD-A5EJ-01 14 95234790 95234790 G A GSC 3'UTR 0.34 TCGA-AD-A5EJ-01 15 100516256 100516256 G - ADAMTS17 Frame_Shift_Del p.R1041Afs*5 0.31 TCGA-AD-A5EJ-01 15 101113934 101113934 G T LINS Missense_Mutation p.L382I 0.18 deleterious(0.02) probably_damaging(0.991) TCGA-AD-A5EJ-01 15 101113991 101113992 - A LINS Frame_Shift_Ins p.G363Wfs*3 0.09 TCGA-AD-A5EJ-01 15 20644358 20644358 C T HERC2P3 RNA 0.32 TCGA-AD-A5EJ-01 15 21051254 21051254 A G POTEB2 Silent p.A402A 0.21 TCGA-AD-A5EJ-01 15 22383015 22383015 C A OR4N4 Silent p.V181V 0.33 TCGA-AD-A5EJ-01 15 23049280 23049280 G A NIPA1 Missense_Mutation p.A180V 0.11 deleterious(0.03) possibly_damaging(0.563) TCGA-AD-A5EJ-01 15 23891085 23891085 G A MAGEL2 5'UTR 0.29 TCGA-AD-A5EJ-01 15 24921564 24921564 G T NPAP1 Nonsense_Mutation p.E184* 0.28 TCGA-AD-A5EJ-01 15 24927892 24927892 A - NPAP1 3'UTR 0.46 TCGA-AD-A5EJ-01 15 26026247 26026247 C T ATP10A Silent p.G191G 0.16 TCGA-AD-A5EJ-01 15 28482260 28482260 C A HERC2 Splice_Site p.X1285_splice 0.29 TCGA-AD-A5EJ-01 15 31197375 31197375 T C FAN1 Missense_Mutation p.I170T 0.40 tolerated(0.36) benign(0.002) TCGA-AD-A5EJ-01 15 33360057 33360057 C T FMN1 Missense_Mutation p.G10D 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-AD-A5EJ-01 15 33938601 33938601 C T RYR3 Missense_Mutation p.T1272M 0.25 benign(0.109) TCGA-AD-A5EJ-01 15 39880805 39880805 G A THBS1 Missense_Mutation p.R517H 0.33 deleterious(0) probably_damaging(0.983) TCGA-AD-A5EJ-01 15 40257982 40257982 A - EIF2AK4 Frame_Shift_Del p.M321Wfs*31 0.11 TCGA-AD-A5EJ-01 15 40865912 40865912 C T RPUSD2 Missense_Mutation p.P364S 0.42 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 15 41192406 41192406 C A VPS18 Silent p.R464R 0.15 TCGA-AD-A5EJ-01 15 41226862 41226862 C T DLL4 Silent p.L323L 0.30 TCGA-AD-A5EJ-01 15 41297869 41297869 C A INO80 Missense_Mutation p.R1140M 0.15 deleterious(0) possibly_damaging(0.713) TCGA-AD-A5EJ-01 15 41476730 41476730 C A EXD1 Missense_Mutation p.R315M 0.28 deleterious(0.03) possibly_damaging(0.718) TCGA-AD-A5EJ-01 15 41522849 41522849 G A EXD1 5'UTR 0.61 TCGA-AD-A5EJ-01 15 41961717 41961717 G A MGA Missense_Mutation p.A209T 0.43 deleterious(0.03) possibly_damaging(0.781) TCGA-AD-A5EJ-01 15 42046766 42046766 G A MGA Splice_Site p.X2380_splice 0.10 TCGA-AD-A5EJ-01 15 42054340 42054340 A C MGA Missense_Mutation p.E2508D 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-AD-A5EJ-01 15 42148630 42148630 C T SPTBN5 Missense_Mutation p.R2992Q 0.28 probably_damaging(0.963) TCGA-AD-A5EJ-01 15 42149679 42149679 C T SPTBN5 Missense_Mutation p.R2793Q 0.39 benign(0.023) TCGA-AD-A5EJ-01 15 42483760 42483760 T C VPS39 Splice_Site p.X47_splice 0.37 TCGA-AD-A5EJ-01 15 43545075 43545075 G A TGM5 Silent p.D248D 0.18 TCGA-AD-A5EJ-01 15 43569117 43569117 C T TGM7 Missense_Mutation p.S639N 0.34 tolerated(0.23) benign(0.015) TCGA-AD-A5EJ-01 15 44067736 44067736 G A ELL3 Nonsense_Mutation p.Q186* 0.25 TCGA-AD-A5EJ-01 15 45353388 45353388 G A SORD Missense_Mutation p.C130Y 0.12 deleterious(0.01) probably_damaging(0.97) TCGA-AD-A5EJ-01 15 45560408 45560408 G C SLC28A2 Silent p.G400G 0.37 TCGA-AD-A5EJ-01 15 48435177 48435177 T - MYEF2 Frame_Shift_Del p.A578Pfs*4 0.20 TCGA-AD-A5EJ-01 15 49170369 49170369 G A EID1 5'UTR 0.36 TCGA-AD-A5EJ-01 15 49800466 49800466 T - FAM227B Frame_Shift_Del p.A319Hfs*6 0.32 TCGA-AD-A5EJ-01 15 51780284 51780284 A - DMXL2 Frame_Shift_Del p.F1695Sfs*15 0.17 TCGA-AD-A5EJ-01 15 53907717 53907717 G A WDR72 Nonsense_Mutation p.R896* 0.33 TCGA-AD-A5EJ-01 15 55497651 55497651 A G RAB27A 3'UTR 0.39 TCGA-AD-A5EJ-01 15 55972397 55972397 A G PRTG Silent p.I276I 0.35 TCGA-AD-A5EJ-01 15 56387980 56387980 G T RFX7 Missense_Mutation p.P649H 0.19 deleterious_low_confidence(0.01) benign(0.24) TCGA-AD-A5EJ-01 15 56388683 56388683 C T RFX7 Missense_Mutation p.V415I 0.06 tolerated(0.99) benign(0.023) TCGA-AD-A5EJ-01 15 58925401 58925401 T C ADAM10 Silent p.G390G 0.15 TCGA-AD-A5EJ-01 15 59350726 59350726 G A RNF111 Missense_Mutation p.S448N 0.32 tolerated_low_confidence(0.07) benign(0.002) TCGA-AD-A5EJ-01 15 59934435 59934435 G A GTF2A2 Silent p.C68C 0.27 TCGA-AD-A5EJ-01 15 59956188 59956188 C A BNIP2 3'UTR 0.29 TCGA-AD-A5EJ-01 15 63069082 63069082 G T TLN2 Silent p.V1829V 0.20 TCGA-AD-A5EJ-01 15 63632966 63632966 G A CA12 Missense_Mutation p.P181L 0.19 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 15 65054640 65054640 G A RBPMS2 Intron 0.16 TCGA-AD-A5EJ-01 15 65273297 65273297 A G SPG21 Missense_Mutation p.C44R 0.38 tolerated(0.06) benign(0.274) TCGA-AD-A5EJ-01 15 65347142 65347142 G A RASL12 3'UTR 0.29 TCGA-AD-A5EJ-01 15 65621392 65621392 G A IGDCC3 Missense_Mutation p.A767V 0.06 tolerated_low_confidence(0.16) possibly_damaging(0.499) TCGA-AD-A5EJ-01 15 65623076 65623076 G - IGDCC3 Frame_Shift_Del p.P522Lfs*71 0.44 TCGA-AD-A5EJ-01 15 65682628 65682628 G A IGDCC4 Missense_Mutation p.A758V 0.29 tolerated(0.14) benign(0.386) TCGA-AD-A5EJ-01 15 66806331 66806331 T C ZWILCH Silent p.D37D 0.29 TCGA-AD-A5EJ-01 15 68582071 68582071 G A FEM1B Silent p.L125L 0.22 TCGA-AD-A5EJ-01 15 69548464 69548464 A T GLCE Missense_Mutation p.I107F 0.34 deleterious(0) possibly_damaging(0.888) TCGA-AD-A5EJ-01 15 72105912 72105912 C T CTD-2524L6.3 5'Flank 0.40 TCGA-AD-A5EJ-01 15 72691014 72691014 A G TMEM202 Silent p.K34K 0.40 TCGA-AD-A5EJ-01 15 73889643 73889643 G A NPTN Silent p.D53D 0.33 TCGA-AD-A5EJ-01 15 74032581 74032581 G A C15orf59 Missense_Mutation p.R187W 0.30 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 15 74653889 74653889 A G CYP11A1 Intron 0.27 TCGA-AD-A5EJ-01 15 75091204 75091204 G A CSK Missense_Mutation p.R56H 0.17 tolerated(0.07) benign(0.02) TCGA-AD-A5EJ-01 15 75798232 75798232 A G PTPN9 Missense_Mutation p.L251P 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-AD-A5EJ-01 15 79587853 79587853 T C ANKRD34C 3'UTR 0.17 TCGA-AD-A5EJ-01 15 80800574 80800574 C T ARNT2 Missense_Mutation p.R234W 0.36 deleterious(0) benign(0.146) TCGA-AD-A5EJ-01 15 83495560 83495560 C T WHAMM Missense_Mutation p.R535C 0.22 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 15 88678589 88678589 C A NTRK3 Missense_Mutation p.R316L 0.35 tolerated(0.32) benign(0.116) TCGA-AD-A5EJ-01 15 89424766 89424766 G A HAPLN3 Silent p.I105I 0.15 TCGA-AD-A5EJ-01 15 90142614 90142614 G A TICRR Missense_Mutation p.A654T 0.22 tolerated(0.15) benign(0.139) TCGA-AD-A5EJ-01 15 90167670 90167670 C - TICRR Frame_Shift_Del p.P1378Lfs*50 0.17 TCGA-AD-A5EJ-01 15 90340949 90340949 G A ANPEP Missense_Mutation p.H672Y 0.34 deleterious(0.02) benign(0.003) TCGA-AD-A5EJ-01 15 91424648 91424648 C - FURIN Frame_Shift_Del p.C644Afs*13 0.24 TCGA-AD-A5EJ-01 15 91433138 91433138 C T FES Missense_Mutation p.T332M 0.30 tolerated(0.1) benign(0.007) TCGA-AD-A5EJ-01 15 91549611 91549611 G A VPS33B Silent p.A281A 0.37 TCGA-AD-A5EJ-01 15 91573131 91573131 C T AC068831.10 Intron 0.28 TCGA-AD-A5EJ-01 15 92705995 92705995 C A SLCO3A1 Missense_Mutation p.P588H 0.23 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 16 109449 109449 A G RHBDF1 Missense_Mutation p.Y621H 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-AD-A5EJ-01 16 11009471 11009471 G A CIITA Missense_Mutation p.R978Q 0.36 tolerated(0.13) benign(0.048) TCGA-AD-A5EJ-01 16 11785878 11785878 G T TXNDC11 Missense_Mutation p.L390I 0.05 tolerated(0.13) possibly_damaging(0.894) TCGA-AD-A5EJ-01 16 14758878 14758878 A G BFAR Silent p.S370S 0.34 TCGA-AD-A5EJ-01 16 1505797 1505797 C A CLCN7 Splice_Site p.X306_splice 0.37 TCGA-AD-A5EJ-01 16 15820795 15820797 CTT - MYH11 In_Frame_Del p.K1263del 0.42 TCGA-AD-A5EJ-01 16 1706499 1706499 G A CRAMP1L Missense_Mutation p.D581N 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-AD-A5EJ-01 16 1717380 1717380 G A CRAMP1L Silent p.E1027E 0.10 TCGA-AD-A5EJ-01 16 1748941 1748941 G A HN1L Missense_Mutation p.R172H 0.41 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 16 18845696 18845696 G A SMG1 Missense_Mutation p.R2799W 0.28 deleterious(0) probably_damaging(0.99) TCGA-AD-A5EJ-01 16 19058559 19058559 C A TMC7 Missense_Mutation p.F576L 0.05 deleterious(0.02) possibly_damaging(0.651) TCGA-AD-A5EJ-01 16 19130809 19130845 TTAAAGTGAAACTTGATGATTTTTAAACAAGTAATTA AAAGTGAAACTTGATGATTTTTAAACAAGTAATT ITPRIPL2 3'UTR 0.10 TCGA-AD-A5EJ-01 16 19130845 19130845 A - ITPRIPL2 3'UTR 0.19 TCGA-AD-A5EJ-01 16 19184071 19184072 - A SYT17 Intron 0.16 TCGA-AD-A5EJ-01 16 19548127 19548127 G A CCP110 Missense_Mutation p.R379H 0.34 tolerated(0.13) benign(0) TCGA-AD-A5EJ-01 16 19552050 19552050 G A CCP110 Missense_Mutation p.A664T 0.10 tolerated(0.05) probably_damaging(0.99) TCGA-AD-A5EJ-01 16 2028594 2028594 G A TBL3 Missense_Mutation p.A779T 0.32 tolerated(1) benign(0.001) TCGA-AD-A5EJ-01 16 20448387 20448387 A C ACSM5 Missense_Mutation p.K441T 0.37 deleterious(0.01) probably_damaging(0.984) TCGA-AD-A5EJ-01 16 2048968 2048968 T - ZNF598 Frame_Shift_Del p.A737Hfs*12 0.26 TCGA-AD-A5EJ-01 16 20807775 20807776 - A ACSM3 Frame_Shift_Ins p.T549Nfs*29 0.38 TCGA-AD-A5EJ-01 16 20976176 20976176 G A DNAH3 Silent p.G3010G 0.36 TCGA-AD-A5EJ-01 16 20999308 20999308 A G DNAH3 Silent p.I2227I 0.32 TCGA-AD-A5EJ-01 16 21726384 21726384 C T OTOA Missense_Mutation p.R467C 0.33 tolerated(0.08) benign(0) TCGA-AD-A5EJ-01 16 22359050 22359050 T - CDR2 Frame_Shift_Del p.T201Qfs*2 0.25 TCGA-AD-A5EJ-01 16 2348450 2348450 G A ABCA3 Silent p.C611C 0.17 TCGA-AD-A5EJ-01 16 2546341 2546341 C T RP11-20I23.1 Silent p.C64C 0.18 TCGA-AD-A5EJ-01 16 26147335 26147335 T C HS3ST4 Silent p.R379R 0.06 TCGA-AD-A5EJ-01 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.25 TCGA-AD-A5EJ-01 16 2809357 2809357 C T SRRM2 Missense_Mutation p.P232S 0.41 unknown(0) TCGA-AD-A5EJ-01 16 2813343 2813343 T C SRRM2 Silent p.P938P 0.30 TCGA-AD-A5EJ-01 16 28841228 28841228 C T ATXN2L Missense_Mutation p.R295C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 16 28847821 28847821 G A ATXN2L Intron 0.39 TCGA-AD-A5EJ-01 16 28877711 28877711 C T SH2B1 Missense_Mutation p.A99V 0.07 tolerated(0.55) benign(0.001) TCGA-AD-A5EJ-01 16 29824990 29824990 A - PRRT2 Frame_Shift_Del p.K207Nfs*22 0.12 TCGA-AD-A5EJ-01 16 29842232 29842232 C - MVP Frame_Shift_Del p.P55Hfs*69 0.26 TCGA-AD-A5EJ-01 16 29872765 29872765 A C CDIPT Intron 0.19 TCGA-AD-A5EJ-01 16 29909253 29909253 G - SEZ6L2 Frame_Shift_Del p.T45Rfs*16 0.23 TCGA-AD-A5EJ-01 16 29993210 29993210 C A TAOK2 Silent p.S260S 0.37 TCGA-AD-A5EJ-01 16 30016796 30016796 G A INO80E 3'UTR 0.33 TCGA-AD-A5EJ-01 16 3063354 3063354 G C CLDN9 5'UTR 0.19 TCGA-AD-A5EJ-01 16 30679930 30679930 C T FBRS Silent p.N708N 0.14 TCGA-AD-A5EJ-01 16 3073266 3073266 G - HCFC1R1 Frame_Shift_Del p.M84* 0.30 TCGA-AD-A5EJ-01 16 30779680 30779680 G A RNF40 Missense_Mutation p.G603D 0.26 tolerated(0.63) benign(0.023) TCGA-AD-A5EJ-01 16 3079338 3079338 G A CCDC64B Silent p.L350L 0.39 TCGA-AD-A5EJ-01 16 31271374 31271374 C A ITGAM 5'UTR 0.30 TCGA-AD-A5EJ-01 16 31500564 31500564 G A SLC5A2 Missense_Mutation p.V524M 0.40 tolerated(0.11) benign(0.036) TCGA-AD-A5EJ-01 16 31504964 31504964 G A C16orf58 Silent p.L306L 0.31 TCGA-AD-A5EJ-01 16 32890554 32890554 C T SLC6A10P RNA 0.31 TCGA-AD-A5EJ-01 16 3336043 3336043 C T ZNF263 Silent p.D221D 0.36 TCGA-AD-A5EJ-01 16 4242075 4242075 G T SRL 3'UTR 0.36 TCGA-AD-A5EJ-01 16 4562466 4562466 G A CDIP1 3'UTR 0.35 TCGA-AD-A5EJ-01 16 4606545 4606545 G T C16orf96 Missense_Mutation p.G19W 0.24 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 16 4733894 4733894 C G MGRN1 Missense_Mutation p.H527D 0.29 tolerated_low_confidence(0.1) benign(0.139) TCGA-AD-A5EJ-01 16 47621625 47621625 G A PHKB Missense_Mutation p.R274H 0.47 deleterious(0.01) benign(0.344) TCGA-AD-A5EJ-01 16 49671925 49671925 G A ZNF423 Missense_Mutation p.R380C 0.16 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-AD-A5EJ-01 16 5080390 5080390 G A NAGPA Missense_Mutation p.R263C 0.30 probably_damaging(0.993) TCGA-AD-A5EJ-01 16 50813856 50813856 C T CYLD Silent p.G473G 0.24 TCGA-AD-A5EJ-01 16 52497937 52497937 A G TOX3 Missense_Mutation p.F106S 0.34 deleterious(0.03) probably_damaging(0.914) TCGA-AD-A5EJ-01 16 53243679 53243679 A - CHD9 Frame_Shift_Del p.T582Qfs*7 0.24 TCGA-AD-A5EJ-01 16 53340221 53340221 A G CHD9 Missense_Mutation p.Q2231R 0.18 unknown(0) TCGA-AD-A5EJ-01 16 55600629 55600629 C A CAPNS2 5'UTR 0.29 TCGA-AD-A5EJ-01 16 56652646 56652647 - T MT1L RNA 0.30 TCGA-AD-A5EJ-01 16 57085532 57085532 C T NLRC5 Nonsense_Mutation p.Q1169* 0.25 TCGA-AD-A5EJ-01 16 57104486 57104486 G A NLRC5 Silent p.A1541A 0.31 TCGA-AD-A5EJ-01 16 57116382 57116382 A G NLRC5 Missense_Mutation p.E1848G 0.27 deleterious(0) possibly_damaging(0.821) TCGA-AD-A5EJ-01 16 57490504 57490504 G A COQ9 Missense_Mutation p.R156Q 0.31 tolerated(0.49) benign(0.006) TCGA-AD-A5EJ-01 16 57788844 57788844 G A KATNB1 Missense_Mutation p.A411T 0.17 tolerated(0.62) benign(0) TCGA-AD-A5EJ-01 16 57951357 57951357 A G CNGB1 Missense_Mutation p.F661L 0.33 tolerated(0.23) benign(0.023) TCGA-AD-A5EJ-01 16 58031608 58031608 C T ZNF319 Missense_Mutation p.A188T 0.18 tolerated(0.58) benign(0.058) TCGA-AD-A5EJ-01 16 64984732 64984732 A C CDH11 Missense_Mutation p.L611R 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-AD-A5EJ-01 16 67213972 67213972 C T KIAA0895L Missense_Mutation p.C181Y 0.19 deleterious(0.04) benign(0.393) TCGA-AD-A5EJ-01 16 67220553 67220553 T A EXOC3L1 Missense_Mutation p.E431V 0.29 deleterious(0.05) benign(0.128) TCGA-AD-A5EJ-01 16 67765249 67765249 C A RANBP10 Intron 0.18 TCGA-AD-A5EJ-01 16 68225399 68225399 C T NFATC3 Missense_Mutation p.P943S 0.19 tolerated_low_confidence(1) benign(0.002) TCGA-AD-A5EJ-01 16 68308874 68308874 T A SLC7A6 Missense_Mutation p.I82N 0.37 deleterious(0) possibly_damaging(0.467) TCGA-AD-A5EJ-01 16 68867505 68867505 A - CDH1 3'UTR 0.43 TCGA-AD-A5EJ-01 16 69988415 69988415 A G CLEC18A Missense_Mutation p.Q132R 0.34 tolerated(0.35) benign(0.02) TCGA-AD-A5EJ-01 16 70165297 70165297 G A PDPR Silent p.E274E 0.21 TCGA-AD-A5EJ-01 16 71674609 71674609 C T MARVELD3 Silent p.A304A 0.34 TCGA-AD-A5EJ-01 16 72829114 72829115 - G ZFHX3 Frame_Shift_Ins p.P2490Sfs*44 0.23 TCGA-AD-A5EJ-01 16 75269636 75269636 G A BCAR1 Silent p.Y433Y 0.35 TCGA-AD-A5EJ-01 16 75563939 75563939 C T CHST5 Missense_Mutation p.R115H 0.22 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 16 7568372 7568372 C G RBFOX1 Missense_Mutation p.T104S 0.28 tolerated(0.69) possibly_damaging(0.511) TCGA-AD-A5EJ-01 16 77228997 77228997 T C MON1B Missense_Mutation p.L414P 0.38 deleterious(0) probably_damaging(0.99) TCGA-AD-A5EJ-01 16 81097444 81097445 - T C16orf46 Frame_Shift_Ins p.N39Kfs*11 0.26 TCGA-AD-A5EJ-01 16 81641207 81641207 C T CMIP Silent p.S112S 0.43 TCGA-AD-A5EJ-01 16 823129 823129 C A MSLNL Missense_Mutation p.Q713H 0.31 probably_damaging(0.964) TCGA-AD-A5EJ-01 16 84209600 84209600 T C DNAAF1 Missense_Mutation p.L587P 0.11 tolerated(0.09) benign(0.018) TCGA-AD-A5EJ-01 16 84497395 84497395 C A ATP2C2 3'UTR 0.40 TCGA-AD-A5EJ-01 16 84600482 84600482 C A COTL1 Missense_Mutation p.G133V 0.41 deleterious(0) probably_damaging(0.994) TCGA-AD-A5EJ-01 16 85010045 85010045 C - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.25 TCGA-AD-A5EJ-01 16 85948094 85948094 C T IRF8 Missense_Mutation p.T190M 0.36 tolerated(0.2) benign(0.012) TCGA-AD-A5EJ-01 16 88504852 88504852 G - ZNF469 Frame_Shift_Del p.R3634Efs*58 0.33 TCGA-AD-A5EJ-01 16 88873811 88873811 G A CDT1 Silent p.V466V 0.41 TCGA-AD-A5EJ-01 16 89337296 89337296 G A ANKRD11 Missense_Mutation p.R2579C 0.32 probably_damaging(0.999) TCGA-AD-A5EJ-01 16 89763987 89763987 A G SPATA2L Missense_Mutation p.S344P 0.31 tolerated(0.31) benign(0.004) TCGA-AD-A5EJ-01 16 89777022 89777022 G A VPS9D1 Silent p.T410T 0.31 TCGA-AD-A5EJ-01 16 9000392 9000393 - T USP7 Frame_Shift_Ins p.T440Nfs*4 0.11 TCGA-AD-A5EJ-01 16 9196927 9196927 A - C16orf72 Frame_Shift_Del p.K133Nfs*11 0.17 TCGA-AD-A5EJ-01 17 10235454 10235454 C T MYH13 Missense_Mutation p.D754N 0.30 deleterious(0.04) benign(0.006) TCGA-AD-A5EJ-01 17 10428116 10428116 A G MYH2 Silent p.A1643A 0.32 TCGA-AD-A5EJ-01 17 14248414 14248414 G C HS3ST3B1 Silent p.R208R 0.23 TCGA-AD-A5EJ-01 17 1577847 1577847 C T PRPF8 Missense_Mutation p.G1063E 0.18 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 17 17697826 17697826 G A RAI1 Missense_Mutation p.E522K 0.35 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 17 17699359 17699359 C - RAI1 Frame_Shift_Del p.Q1035Rfs*29 0.23 TCGA-AD-A5EJ-01 17 17896116 17896116 T A LRRC48 Missense_Mutation p.L161H 0.14 deleterious(0) probably_damaging(0.974) TCGA-AD-A5EJ-01 17 18181545 18181545 G - TOP3A Frame_Shift_Del p.R758Gfs*15 0.24 TCGA-AD-A5EJ-01 17 18647481 18647481 C T FBXW10 5'UTR 0.28 TCGA-AD-A5EJ-01 17 21731086 21731086 C A UBBP4 Missense_Mutation p.R130S 0.31 tolerated(0.07) possibly_damaging(0.785) TCGA-AD-A5EJ-01 17 2224875 2224875 G T SRR Nonsense_Mutation p.G187* 0.17 TCGA-AD-A5EJ-01 17 25974364 25974364 C T LGALS9 Missense_Mutation p.A276V 0.33 tolerated(0.26) benign(0.036) TCGA-AD-A5EJ-01 17 26096029 26096029 G A NOS2 Missense_Mutation p.R670C 0.29 deleterious(0.01) benign(0.077) TCGA-AD-A5EJ-01 17 26655634 26655634 T - IFT20 3'UTR 0.54 TCGA-AD-A5EJ-01 17 26883220 26883220 A G PIGS Missense_Mutation p.M382T 0.08 deleterious(0.04) benign(0.03) TCGA-AD-A5EJ-01 17 26906804 26906804 G A SPAG5 Missense_Mutation p.T950I 0.35 tolerated(0.05) probably_damaging(0.999) TCGA-AD-A5EJ-01 17 27402234 27402234 G A TIAF1 5'UTR 0.37 TCGA-AD-A5EJ-01 17 27424288 27424288 C T MYO18A Missense_Mutation p.D1395N 0.28 deleterious(0) probably_damaging(0.986) TCGA-AD-A5EJ-01 17 29686033 29686033 G T NF1 Missense_Mutation p.K2720N 0.11 tolerated(0.1) probably_damaging(0.977) TCGA-AD-A5EJ-01 17 30180007 30180007 C - COPRS Frame_Shift_Del p.G70Vfs*22 0.13 TCGA-AD-A5EJ-01 17 31107610 31107610 A G MYO1D Silent p.T96T 0.25 TCGA-AD-A5EJ-01 17 33460499 33460499 G A NLE1 Silent p.R411R 0.24 TCGA-AD-A5EJ-01 17 33884646 33884646 C T SLFN14 Missense_Mutation p.A146T 0.30 deleterious(0.02) possibly_damaging(0.871) TCGA-AD-A5EJ-01 17 35830558 35830558 G A TADA2A Missense_Mutation p.R317H 0.16 deleterious(0.02) benign(0.047) TCGA-AD-A5EJ-01 17 3629138 3629138 G A GSG2 Missense_Mutation p.A637T 0.27 deleterious(0) probably_damaging(0.983) TCGA-AD-A5EJ-01 17 36896574 36896574 C T PCGF2 Missense_Mutation p.A28T 0.22 deleterious(0.02) possibly_damaging(0.573) TCGA-AD-A5EJ-01 17 37188094 37188094 C A CTD-2206N4.2 5'Flank 0.31 TCGA-AD-A5EJ-01 17 37809880 37809882 CTC - STARD3 In_Frame_Del p.S34del 0.46 TCGA-AD-A5EJ-01 17 37900857 37900857 G A GRB7 Missense_Mutation p.V308M 0.35 tolerated(0.36) benign(0.049) TCGA-AD-A5EJ-01 17 3819462 3819462 G - P2RX1 Frame_Shift_Del p.R20Afs*16 0.22 TCGA-AD-A5EJ-01 17 38323817 38323817 G A CASC3 Missense_Mutation p.A535T 0.24 tolerated(0.17) benign(0.031) TCGA-AD-A5EJ-01 17 38510584 38510584 G A RARA Missense_Mutation p.E280K 0.35 deleterious(0.03) benign(0.271) TCGA-AD-A5EJ-01 17 39274446 39274446 C T KRTAP4-11 Missense_Mutation p.R41H 0.38 tolerated(0.06) unknown(0) TCGA-AD-A5EJ-01 17 39340911 39340911 G A KRTAP4-1 Missense_Mutation p.H66Y 0.34 deleterious(0.03) benign(0) TCGA-AD-A5EJ-01 17 39768744 39768744 C - KRT16 Frame_Shift_Del p.G66Afs*54 0.19 TCGA-AD-A5EJ-01 17 3981257 3981257 C T ZZEF1 Missense_Mutation p.S970N 0.13 tolerated(0.06) possibly_damaging(0.488) TCGA-AD-A5EJ-01 17 39975906 39975906 G A FKBP10 Missense_Mutation p.A348T 0.44 deleterious(0) probably_damaging(0.977) TCGA-AD-A5EJ-01 17 39976559 39976559 G A FKBP10 Missense_Mutation p.V368I 0.30 tolerated(0.95) benign(0.064) TCGA-AD-A5EJ-01 17 40467732 40467732 G A STAT3 3'UTR 0.19 TCGA-AD-A5EJ-01 17 40622113 40622113 T - ATP6V0A1 Frame_Shift_Del p.F101Lfs*8 0.26 TCGA-AD-A5EJ-01 17 40695083 40695083 C A NAGLU Silent p.L353L 0.21 TCGA-AD-A5EJ-01 17 40847564 40847564 C T CNTNAP1 Silent p.G1006G 0.22 TCGA-AD-A5EJ-01 17 42092401 42092401 A C TMEM101 5'UTR 0.32 TCGA-AD-A5EJ-01 17 42979783 42979783 G A CCDC103 Nonsense_Mutation p.W109* 0.07 TCGA-AD-A5EJ-01 17 43175894 43175894 A G NMT1 Silent p.V286V 0.31 TCGA-AD-A5EJ-01 17 44115975 44115975 G A KANSL1 Nonsense_Mutation p.R824* 0.38 TCGA-AD-A5EJ-01 17 46005200 46005200 C T SP2 3'UTR 0.30 TCGA-AD-A5EJ-01 17 46136921 46136921 G A NFE2L1 Missense_Mutation p.G746D 0.41 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 17 4692325 4692325 C - GLTPD2 Frame_Shift_Del p.P8Qfs*28 0.40 TCGA-AD-A5EJ-01 17 47247152 47247152 A - B4GALNT2 3'UTR 0.24 TCGA-AD-A5EJ-01 17 47375883 47375883 C T ZNF652 Silent p.P571P 0.36 TCGA-AD-A5EJ-01 17 4838060 4838060 G A GP1BA 3'UTR 0.06 TCGA-AD-A5EJ-01 17 48432874 48432874 G A XYLT2 Silent p.E340E 0.27 TCGA-AD-A5EJ-01 17 48457845 48457845 C T EME1 Missense_Mutation p.P520S 0.37 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 17 4857073 4857073 A G ENO3 Missense_Mutation p.K126R 0.13 tolerated_low_confidence(0.06) probably_damaging(0.991) TCGA-AD-A5EJ-01 17 48598683 48598683 G A MYCBPAP Missense_Mutation p.D390N 0.16 deleterious(0) probably_damaging(0.969) TCGA-AD-A5EJ-01 17 48605618 48605618 G A MYCBPAP Silent p.V841V 0.20 TCGA-AD-A5EJ-01 17 48918239 48918239 G - WFIKKN2 Frame_Shift_Del p.E532Rfs*75 0.10 TCGA-AD-A5EJ-01 17 49233032 49233032 G A NME1 Missense_Mutation p.R31H 0.33 tolerated(0.05) benign(0.039) TCGA-AD-A5EJ-01 17 4937186 4937186 G A SLC52A1 Silent p.L200L 0.25 TCGA-AD-A5EJ-01 17 5012249 5012249 A G ZNF232 Silent p.P199P 0.24 TCGA-AD-A5EJ-01 17 5250132 5250132 T C RABEP1 Silent p.T232T 0.12 TCGA-AD-A5EJ-01 17 5353552 5353555 GATA - DHX33 Frame_Shift_Del p.Y566Gfs*6 0.32 TCGA-AD-A5EJ-01 17 54939546 54939546 C A DGKE Missense_Mutation p.F486L 0.34 tolerated(0.19) probably_damaging(0.996) TCGA-AD-A5EJ-01 17 54969288 54969288 T C TRIM25 Missense_Mutation p.T556A 0.31 tolerated(0.16) benign(0.088) TCGA-AD-A5EJ-01 17 54985876 54985876 C - TRIM25 Frame_Shift_Del p.A216Rfs*8 0.10 TCGA-AD-A5EJ-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.36 TCGA-AD-A5EJ-01 17 56435713 56435713 G T RNF43 Missense_Mutation p.S475Y 0.35 deleterious(0) probably_damaging(0.987) TCGA-AD-A5EJ-01 17 56679907 56679908 - T TEX14 Frame_Shift_Ins p.A467Sfs*11 0.15 TCGA-AD-A5EJ-01 17 57776292 57776295 AATT - PTRH2 5'UTR 0.39 TCGA-AD-A5EJ-01 17 60005254 60005254 G T INTS2 Intron 0.37 TCGA-AD-A5EJ-01 17 61560495 61560495 C - ACE Frame_Shift_Del p.P485Lfs*40 0.28 TCGA-AD-A5EJ-01 17 61620958 61620959 - C KCNH6 Frame_Shift_Ins p.R726Pfs*16 0.29 TCGA-AD-A5EJ-01 17 61987062 61987062 C T CSHL1 3'Flank 0.37 TCGA-AD-A5EJ-01 17 6371585 6371585 C T PITPNM3 Missense_Mutation p.R617Q 0.32 deleterious(0.01) benign(0.029) TCGA-AD-A5EJ-01 17 64225516 64225516 G T APOH 5'UTR 0.38 TCGA-AD-A5EJ-01 17 64738737 64738737 C T PRKCA Intron 0.37 TCGA-AD-A5EJ-01 17 6661461 6661461 G A XAF1 Missense_Mutation p.R29Q 0.19 tolerated(0.11) benign(0.183) TCGA-AD-A5EJ-01 17 67183876 67183876 A C ABCA10 Missense_Mutation p.V759G 0.35 deleterious(0) possibly_damaging(0.714) TCGA-AD-A5EJ-01 17 726955 726955 G A NXN Missense_Mutation p.P177S 0.34 tolerated(0.33) possibly_damaging(0.685) TCGA-AD-A5EJ-01 17 72838476 72838476 C A GRIN2C 3'UTR 0.37 TCGA-AD-A5EJ-01 17 73016650 73016650 G A ICT1 Missense_Mutation p.R145Q 0.42 tolerated(0.13) probably_damaging(0.986) TCGA-AD-A5EJ-01 17 73017169 73017169 C T ICT1 3'UTR 0.27 TCGA-AD-A5EJ-01 17 73222250 73222250 C T NUP85 Silent p.C364C 0.51 TCGA-AD-A5EJ-01 17 7329686 7329688 CGC - C17orf74 In_Frame_Del p.R130del 0.37 TCGA-AD-A5EJ-01 17 73565079 73565079 G T LLGL2 Missense_Mutation p.R448L 0.21 deleterious(0) probably_damaging(0.922) TCGA-AD-A5EJ-01 17 7366244 7366244 C - ZBTB4 Frame_Shift_Del p.G686Afs*53 0.44 TCGA-AD-A5EJ-01 17 73814722 73814722 G T UNK Splice_Site p.X458_splice 0.32 TCGA-AD-A5EJ-01 17 73842727 73842727 G A WBP2 3'UTR 0.43 TCGA-AD-A5EJ-01 17 74006428 74006428 C A EVPL Missense_Mutation p.R953M 0.31 deleterious(0.04) possibly_damaging(0.907) TCGA-AD-A5EJ-01 17 74036992 74036992 G A SRP68 Missense_Mutation p.A531V 0.35 deleterious(0.05) possibly_damaging(0.476) TCGA-AD-A5EJ-01 17 74475014 74475014 C G RHBDF2 Silent p.P211P 0.21 TCGA-AD-A5EJ-01 17 74625764 74625764 C A ST6GALNAC1 Missense_Mutation p.R54M 0.17 probably_damaging(0.915) TCGA-AD-A5EJ-01 17 74673610 74673610 G A MXRA7 3'UTR 0.18 TCGA-AD-A5EJ-01 17 74772591 74772591 G A MFSD11 Missense_Mutation p.A385T 0.26 tolerated(0.1) possibly_damaging(0.578) TCGA-AD-A5EJ-01 17 7577035 7577036 - G TP53 Frame_Shift_Ins p.G302Rfs*4 0.10 TCGA-AD-A5EJ-01 17 7578275 7578277 GAG - TP53 In_Frame_Del p.P191del 0.13 TCGA-AD-A5EJ-01 17 76047107 76047107 G - TNRC6C Frame_Shift_Del p.E657Rfs*3 0.20 TCGA-AD-A5EJ-01 17 76116793 76116793 G A TMC6 Silent p.F552F 0.19 TCGA-AD-A5EJ-01 17 77015668 77015668 C A C1QTNF1-AS1 Missense_Mutation p.K57N 0.37 benign(0.001) TCGA-AD-A5EJ-01 17 77923616 77923616 G A TBC1D16 Missense_Mutation p.P436S 0.11 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 17 78196528 78196528 C G SLC26A11 Silent p.G103G 0.05 TCGA-AD-A5EJ-01 17 78272192 78272192 T C RNF213 Missense_Mutation p.L695P 0.17 probably_damaging(0.998) TCGA-AD-A5EJ-01 17 78449390 78449390 G - NPTX1 Frame_Shift_Del p.R192Gfs*14 0.10 TCGA-AD-A5EJ-01 17 78681741 78681741 A G RPTOR Missense_Mutation p.Y150C 0.16 deleterious(0) possibly_damaging(0.786) TCGA-AD-A5EJ-01 17 78899231 78899231 C T RPTOR Missense_Mutation p.T957M 0.19 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 17 79409732 79409732 C T RP11-1055B8.7 Missense_Mutation p.R453W 0.38 probably_damaging(0.997) TCGA-AD-A5EJ-01 17 79575789 79575789 G A NPLOC4 Silent p.H165H 0.39 TCGA-AD-A5EJ-01 17 79683846 79683846 G A SLC25A10 Missense_Mutation p.A142T 0.31 deleterious(0.03) benign(0.022) TCGA-AD-A5EJ-01 17 80398955 80398955 A G HEXDC Silent p.Q355Q 0.40 TCGA-AD-A5EJ-01 17 80882840 80882840 T C TBCD Silent p.A762A 0.31 TCGA-AD-A5EJ-01 17 8380358 8380358 C A MYH10 Missense_Mutation p.K1905N 0.38 probably_damaging(0.997) TCGA-AD-A5EJ-01 17 8448867 8448867 G A MYH10 Missense_Mutation p.R444C 0.25 probably_damaging(0.949) TCGA-AD-A5EJ-01 17 909374 909374 G - ABR Frame_Shift_Del p.I843Ffs*41 0.31 TCGA-AD-A5EJ-01 17 9580068 9580068 T C USP43 Missense_Mutation p.L280S 0.34 deleterious(0) probably_damaging(0.918) TCGA-AD-A5EJ-01 17 9862623 9862623 T - GAS7 Intron 0.20 TCGA-AD-A5EJ-01 18 11853119 11853119 C T CHMP1B 3'UTR 0.40 TCGA-AD-A5EJ-01 18 18534827 18534827 G - ROCK1 Frame_Shift_Del p.P1257Lfs*3 0.17 TCGA-AD-A5EJ-01 18 28588429 28588429 T C DSC3 Silent p.P442P 0.10 TCGA-AD-A5EJ-01 18 28991227 28991227 C T DSG4 Missense_Mutation p.T743M 0.21 tolerated(0.11) benign(0.064) TCGA-AD-A5EJ-01 18 3131475 3131475 C A MYOM1 Missense_Mutation p.V802L 0.17 tolerated(0.12) benign(0.013) TCGA-AD-A5EJ-01 18 32395872 32395873 - A DTNA Frame_Shift_Ins p.V204Sfs*39 0.26 TCGA-AD-A5EJ-01 18 39617680 39617680 T - PIK3C3 Frame_Shift_Del p.F623Lfs*43 0.29 TCGA-AD-A5EJ-01 18 42530319 42530320 - A SETBP1 Frame_Shift_Ins p.D341Rfs*23 0.25 TCGA-AD-A5EJ-01 18 43247924 43247924 C T SLC14A2 Missense_Mutation p.A615V 0.34 deleterious(0) possibly_damaging(0.903) TCGA-AD-A5EJ-01 18 43329814 43329814 T A SLC14A1 Missense_Mutation p.N412K 0.30 deleterious(0) probably_damaging(0.931) TCGA-AD-A5EJ-01 18 44408012 44408012 G A PIAS2 Missense_Mutation p.T473I 0.16 deleterious(0.01) benign(0.155) TCGA-AD-A5EJ-01 18 47369662 47369662 C A MYO5B Missense_Mutation p.K1520N 0.38 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 18 51820023 51820023 T C POLI Missense_Mutation p.M470T 0.40 tolerated(0.4) benign(0.011) TCGA-AD-A5EJ-01 18 55268966 55268966 C T NARS Missense_Mutation p.R522Q 0.26 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 18 56001094 56001094 C T NEDD4L Silent p.D345D 0.35 TCGA-AD-A5EJ-01 18 57013194 57013194 T - LMAN1 Frame_Shift_Del p.E305Rfs*22 0.35 TCGA-AD-A5EJ-01 18 58039584 58039584 C T MC4R 5'UTR 0.26 TCGA-AD-A5EJ-01 18 60241838 60241838 G A ZCCHC2 Missense_Mutation p.A842T 0.33 deleterious(0.04) benign(0.013) TCGA-AD-A5EJ-01 18 61565040 61565041 - A SERPINB2 Frame_Shift_Ins p.I169Dfs*2 0.24 TCGA-AD-A5EJ-01 18 61602379 61602379 C A SERPINB10 Missense_Mutation p.P366Q 0.45 tolerated(0.5) probably_damaging(0.951) TCGA-AD-A5EJ-01 18 70461454 70461454 G A NETO1 Silent p.S179S 0.37 TCGA-AD-A5EJ-01 18 70534514 70534514 G A NETO1 Missense_Mutation p.R5C 0.35 deleterious_low_confidence(0.01) benign(0.446) TCGA-AD-A5EJ-01 18 72344421 72344421 G A ZNF407 Silent p.A482A 0.41 TCGA-AD-A5EJ-01 18 74091445 74091445 G A ZNF516 Silent p.C875C 0.34 TCGA-AD-A5EJ-01 18 74700846 74700846 G - RP11-862L9.3 3'Flank 0.20 TCGA-AD-A5EJ-01 18 77489068 77489068 A C CTDP1 Missense_Mutation p.E860A 0.15 deleterious(0) probably_damaging(0.969) TCGA-AD-A5EJ-01 18 77926971 77926971 C T AC139100.2 3'UTR 0.15 TCGA-AD-A5EJ-01 19 10270390 10270390 G A DNMT1 Silent p.N408N 0.38 TCGA-AD-A5EJ-01 19 10439719 10439719 G A RAVER1 Missense_Mutation p.R136W 0.42 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 19 10461542 10461542 C A TYK2 Missense_Mutation p.G1178C 0.37 deleterious(0.01) possibly_damaging(0.602) TCGA-AD-A5EJ-01 19 10468590 10468590 C T TYK2 Silent p.R772R 0.07 TCGA-AD-A5EJ-01 19 10472580 10472580 G A TYK2 Nonsense_Mutation p.R609* 0.32 TCGA-AD-A5EJ-01 19 10502122 10502122 A G CDC37 3'UTR 0.33 TCGA-AD-A5EJ-01 19 10794615 10794615 G A ILF3 Silent p.G680G 0.32 TCGA-AD-A5EJ-01 19 1090916 1090916 C T POLR2E Silent p.T140T 0.50 TCGA-AD-A5EJ-01 19 11038331 11038331 C A YIPF2 Missense_Mutation p.S85I 0.37 deleterious(0.01) possibly_damaging(0.617) TCGA-AD-A5EJ-01 19 11100101 11100101 G A SMARCA4 Silent p.L409L 0.27 TCGA-AD-A5EJ-01 19 11280900 11280900 C T KANK2 Missense_Mutation p.A754T 0.16 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 19 12296931 12296931 A G ZNF136 Missense_Mutation p.K45E 0.31 tolerated(0.27) benign(0.012) TCGA-AD-A5EJ-01 19 1251849 1251849 A G MIDN Silent p.S111S 0.20 TCGA-AD-A5EJ-01 19 12936802 12936802 C T RTBDN Intron 0.29 TCGA-AD-A5EJ-01 19 12987090 12987090 T G DNASE2 Missense_Mutation p.N266T 0.22 deleterious(0) probably_damaging(0.964) TCGA-AD-A5EJ-01 19 13008608 13008608 A G GCDH Missense_Mutation p.N392D 0.16 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-AD-A5EJ-01 19 13063879 13063879 C T RAD23A 3'UTR 0.05 TCGA-AD-A5EJ-01 19 13873959 13873959 C T CCDC130 3'UTR 0.31 TCGA-AD-A5EJ-01 19 14034390 14034390 C A CC2D1A Silent p.T598T 0.39 TCGA-AD-A5EJ-01 19 14046633 14046633 G A PODNL1 Missense_Mutation p.A139V 0.35 tolerated(0.21) possibly_damaging(0.539) TCGA-AD-A5EJ-01 19 14581662 14581662 G T PKN1 Missense_Mutation p.R881M 0.12 deleterious(0) possibly_damaging(0.694) TCGA-AD-A5EJ-01 19 15662233 15662233 C T CYP4F22 Missense_Mutation p.T516M 0.28 deleterious(0) possibly_damaging(0.864) TCGA-AD-A5EJ-01 19 16000343 16000343 C T CYP4F2 Missense_Mutation p.V270I 0.36 tolerated(0.11) benign(0.19) TCGA-AD-A5EJ-01 19 16204531 16204531 C T TPM4 Missense_Mutation p.A247V 0.16 tolerated(0.08) possibly_damaging(0.575) TCGA-AD-A5EJ-01 19 16634021 16634021 G - CHERP Frame_Shift_Del p.Q608Sfs*47 0.24 TCGA-AD-A5EJ-01 19 16643879 16643879 G A CHERP Silent p.N155N 0.26 TCGA-AD-A5EJ-01 19 17441949 17441949 A G ANO8 Missense_Mutation p.V260A 0.31 deleterious(0) benign(0.18) TCGA-AD-A5EJ-01 19 17476302 17476302 C A PLVAP Missense_Mutation p.K324N 0.33 deleterious(0.03) probably_damaging(0.938) TCGA-AD-A5EJ-01 19 17598272 17598272 G A SLC27A1 Missense_Mutation p.R243H 0.23 deleterious(0.03) benign(0.056) TCGA-AD-A5EJ-01 19 17919159 17919161 CTT - B3GNT3 In_Frame_Del p.F183del 0.33 TCGA-AD-A5EJ-01 19 1800042 1800042 G T ATP8B3 Missense_Mutation p.L486M 0.41 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 19 18256564 18256564 C T MAST3 Silent p.D988D 0.11 TCGA-AD-A5EJ-01 19 18271752 18271752 C T PIK3R2 Missense_Mutation p.R147C 0.34 deleterious(0.02) possibly_damaging(0.668) TCGA-AD-A5EJ-01 19 18327598 18327598 G T PDE4C Missense_Mutation p.L480I 0.35 deleterious(0.01) possibly_damaging(0.787) TCGA-AD-A5EJ-01 19 18542165 18542165 C - SSBP4 Frame_Shift_Del p.G127Afs*13 0.57 TCGA-AD-A5EJ-01 19 18724772 18724772 C T TMEM59L Nonsense_Mutation p.R88* 0.34 TCGA-AD-A5EJ-01 19 18778679 18778679 G A KLHL26 Missense_Mutation p.A158T 0.11 tolerated(0.05) benign(0.422) TCGA-AD-A5EJ-01 19 18901943 18901943 G A COMP Intron 0.06 TCGA-AD-A5EJ-01 19 19039135 19039135 G T DDX49 3'UTR 0.36 TCGA-AD-A5EJ-01 19 19360728 19360729 - A NCAN 3'UTR 0.19 TCGA-AD-A5EJ-01 19 1978991 1978991 A C CSNK1G2 Missense_Mutation p.E194A 0.74 deleterious(0) probably_damaging(0.995) TCGA-AD-A5EJ-01 19 20308936 20308936 T - ZNF486 3'UTR 0.21 TCGA-AD-A5EJ-01 19 22170076 22170076 C T ZNF208 Silent p.L56L 0.31 TCGA-AD-A5EJ-01 19 2252522 2252522 G A JSRP1 Missense_Mutation p.R268W 0.40 tolerated(0.07) probably_damaging(0.942) TCGA-AD-A5EJ-01 19 2334673 2334673 C T AC004410.3 3'Flank 0.35 TCGA-AD-A5EJ-01 19 2989135 2989135 G A TLE6 Missense_Mutation p.V273I 0.30 tolerated(0.28) benign(0.002) TCGA-AD-A5EJ-01 19 31768452 31768452 C T TSHZ3 Missense_Mutation p.M749I 0.29 deleterious(0.04) benign(0.184) TCGA-AD-A5EJ-01 19 33133037 33133037 C T ANKRD27 Missense_Mutation p.R266H 0.31 deleterious(0.02) possibly_damaging(0.812) TCGA-AD-A5EJ-01 19 35625531 35625531 C A LGI4 Silent p.V18V 0.40 TCGA-AD-A5EJ-01 19 35836515 35836515 C - CD22 Frame_Shift_Del p.L742Sfs*14 0.20 TCGA-AD-A5EJ-01 19 35850478 35850478 C A FFAR3 Missense_Mutation p.A229D 0.15 deleterious(0) probably_damaging(0.969) TCGA-AD-A5EJ-01 19 35851125 35851125 G A FFAR3 3'UTR 0.17 TCGA-AD-A5EJ-01 19 36216189 36216189 C - KMT2B Frame_Shift_Del p.P1201Rfs*154 0.22 TCGA-AD-A5EJ-01 19 36258832 36258832 C A C19orf55 Missense_Mutation p.T362N 0.30 tolerated(0.36) benign(0.025) TCGA-AD-A5EJ-01 19 36317405 36317405 T C NPHS1 3'UTR 0.35 TCGA-AD-A5EJ-01 19 36339899 36339899 C T NPHS1 Missense_Mutation p.G331S 0.28 tolerated(1) benign(0.001) TCGA-AD-A5EJ-01 19 36365714 36365714 C T APLP1 Silent p.R429R 0.49 TCGA-AD-A5EJ-01 19 36577642 36577642 G A WDR62 Missense_Mutation p.V566M 0.44 tolerated(0.09) probably_damaging(0.912) TCGA-AD-A5EJ-01 19 38102988 38102988 A C ZNF540 Missense_Mutation p.K269N 0.37 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 19 39191761 39191761 G T ACTN4 Nonsense_Mutation p.E133* 0.38 TCGA-AD-A5EJ-01 19 39330958 39330959 - G HNRNPL Frame_Shift_Ins p.P338Tfs*56 0.24 TCGA-AD-A5EJ-01 19 39924333 39924333 C T RPS16 Silent p.K73K 0.37 TCGA-AD-A5EJ-01 19 40005964 40005964 C A SELV Silent p.R38R 0.41 TCGA-AD-A5EJ-01 19 40903759 40903759 C T PRX Missense_Mutation p.R167H 0.42 deleterious(0.01) possibly_damaging(0.715) TCGA-AD-A5EJ-01 19 40996037 40996037 C T SPTBN4 Missense_Mutation p.A126V 0.29 deleterious(0) benign(0.016) TCGA-AD-A5EJ-01 19 41009841 41009841 G A SPTBN4 Silent p.A489A 0.38 TCGA-AD-A5EJ-01 19 41916832 41916832 C T BCKDHA Missense_Mutation p.P98L 0.38 tolerated(0.12) benign(0.244) TCGA-AD-A5EJ-01 19 4224541 4224541 G A ANKRD24 3'UTR 0.43 TCGA-AD-A5EJ-01 19 42729024 42729024 G A ZNF526 Missense_Mutation p.A157T 0.41 tolerated(0.13) probably_damaging(0.999) TCGA-AD-A5EJ-01 19 42729835 42729835 C T ZNF526 Missense_Mutation p.A427V 0.36 tolerated(0.35) benign(0.053) TCGA-AD-A5EJ-01 19 43430029 43430029 G A PSG7 Missense_Mutation p.S380F 0.09 tolerated(1) benign(0.003) TCGA-AD-A5EJ-01 19 43430081 43430081 G C PSG7 Missense_Mutation p.Q363E 0.14 tolerated(1) benign(0.004) TCGA-AD-A5EJ-01 19 45202432 45202432 G T CEACAM16 5'UTR 0.36 TCGA-AD-A5EJ-01 19 45296779 45296779 T C CBLC Missense_Mutation p.W396R 0.12 tolerated(0.37) benign(0) TCGA-AD-A5EJ-01 19 4538954 4538955 - C LRG1 Frame_Shift_Ins p.I15Hfs*7 0.16 TCGA-AD-A5EJ-01 19 45540995 45540995 C T RELB Missense_Mutation p.R563C 0.33 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-AD-A5EJ-01 19 45810799 45810799 T C CKM Missense_Mutation p.H296R 0.38 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 19 45858934 45858934 C T ERCC2 Missense_Mutation p.R511Q 0.38 deleterious(0.01) possibly_damaging(0.889) TCGA-AD-A5EJ-01 19 45923631 45923631 C T ERCC1 Missense_Mutation p.V126I 0.28 tolerated(1) benign(0.007) TCGA-AD-A5EJ-01 19 46388262 46388262 G A IRF2BP1 Silent p.F257F 0.30 TCGA-AD-A5EJ-01 19 47112418 47112418 C T CALM3 3'UTR 0.12 TCGA-AD-A5EJ-01 19 47424493 47424493 G T ARHGAP35 Missense_Mutation p.G854V 0.39 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 19 47712448 47712450 CTT - SAE1 In_Frame_Del p.F331del 0.23 TCGA-AD-A5EJ-01 19 47880356 47880356 G T DHX34 Splice_Site p.X867_splice 0.28 TCGA-AD-A5EJ-01 19 47978759 47978759 G A KPTN Nonsense_Mutation p.R409* 0.37 TCGA-AD-A5EJ-01 19 49548486 49548486 C - CGB5 Frame_Shift_Del p.S147Afs*? 0.31 TCGA-AD-A5EJ-01 19 49564915 49564915 G A NTF4 Missense_Mutation p.R114C 0.28 deleterious(0) possibly_damaging(0.803) TCGA-AD-A5EJ-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.28 TCGA-AD-A5EJ-01 19 50002830 50002830 C T RPS11 Missense_Mutation p.R139C 0.16 tolerated(0.09) benign(0.037) TCGA-AD-A5EJ-01 19 50434266 50434266 G - ATF5 Frame_Shift_Del p.G55Efs*13 0.36 TCGA-AD-A5EJ-01 19 50812903 50812903 C - MYH14 Frame_Shift_Del p.L1991Sfs*14 0.27 TCGA-AD-A5EJ-01 19 50955225 50955225 C - MYBPC2 Frame_Shift_Del p.P573Lfs*7 0.22 TCGA-AD-A5EJ-01 19 51192197 51192197 G - SHANK1 Frame_Shift_Del p.T693Pfs*33 0.18 TCGA-AD-A5EJ-01 19 51274830 51274830 G C GPR32 Missense_Mutation p.E325Q 0.09 tolerated(0.09) benign(0.024) TCGA-AD-A5EJ-01 19 51361309 51361309 G A KLK3 Silent p.R77R 0.10 TCGA-AD-A5EJ-01 19 52273147 52273147 T C FPR2 3'UTR 0.37 TCGA-AD-A5EJ-01 19 52273323 52273323 A - FPR2 3'UTR 0.24 TCGA-AD-A5EJ-01 19 5238994 5238994 C T PTPRS Silent p.A595A 0.24 TCGA-AD-A5EJ-01 19 52448041 52448041 G A ZNF613 Missense_Mutation p.R302Q 0.12 tolerated(0.48) benign(0.015) TCGA-AD-A5EJ-01 19 52942595 52942595 C A ZNF534 Missense_Mutation p.H641N 0.40 deleterious(0) benign(0.325) TCGA-AD-A5EJ-01 19 53357540 53357540 C A ZNF468 5'UTR 0.13 TCGA-AD-A5EJ-01 19 53577451 53577451 G A ZNF160 Silent p.S71S 0.37 TCGA-AD-A5EJ-01 19 53854393 53854393 G A ZNF845 Silent p.Q155Q 0.16 TCGA-AD-A5EJ-01 19 54310804 54310804 C - NLRP12 Frame_Shift_Del p.V730* 0.24 TCGA-AD-A5EJ-01 19 54379371 54379371 C T MYADM 3'UTR 0.36 TCGA-AD-A5EJ-01 19 54697321 54697321 C T TSEN34 3'UTR 0.31 TCGA-AD-A5EJ-01 19 54973314 54973314 T C LENG9 Missense_Mutation p.T488A 0.08 tolerated(1) benign(0.003) TCGA-AD-A5EJ-01 19 55247674 55247674 C T KIR3DL3 3'UTR 0.80 TCGA-AD-A5EJ-01 19 55512184 55512184 A - NLRP2 Frame_Shift_Del p.N1038Tfs*4 0.29 TCGA-AD-A5EJ-01 19 55597439 55597440 AC - EPS8L1 Frame_Shift_Del p.D510Efs*3 0.28 TCGA-AD-A5EJ-01 19 56190212 56190212 C T EPN1 Silent p.H184H 0.32 TCGA-AD-A5EJ-01 19 56490767 56490767 A C NLRP8 Missense_Mutation p.N962H 0.22 tolerated(0.17) benign(0.165) TCGA-AD-A5EJ-01 19 56901741 56901741 T C ZNF582 Intron 0.34 TCGA-AD-A5EJ-01 19 56953573 56953576 TGAT - ZNF667 Frame_Shift_Del p.N263Rfs*52 0.25 TCGA-AD-A5EJ-01 19 57646264 57646264 T - ZIM3 3'UTR 0.19 TCGA-AD-A5EJ-01 19 57723920 57723920 C T ZNF264 Silent p.C485C 0.10 TCGA-AD-A5EJ-01 19 57967105 57967105 C T AC004076.9 Missense_Mutation p.S88N 0.31 tolerated(0.08) benign(0.275) TCGA-AD-A5EJ-01 19 57988936 57988936 C T ZNF772 5'UTR 0.32 TCGA-AD-A5EJ-01 19 58361288 58361288 T G ZNF587 5'UTR 0.14 TCGA-AD-A5EJ-01 19 58385384 58385384 G A ZNF814 Silent p.H458H 0.32 TCGA-AD-A5EJ-01 19 58452947 58452947 C A ZNF256 Missense_Mutation p.S410I 0.32 tolerated(0.18) probably_damaging(0.917) TCGA-AD-A5EJ-01 19 5914613 5914613 G A CAPS Silent p.L41L 0.06 TCGA-AD-A5EJ-01 19 7615223 7615223 G A PNPLA6 Silent p.A627A 0.21 TCGA-AD-A5EJ-01 19 7618840 7618840 G A PNPLA6 Silent p.V790V 0.08 TCGA-AD-A5EJ-01 19 7677045 7677045 G T CAMSAP3 Missense_Mutation p.A583S 0.38 tolerated(0.36) benign(0.167) TCGA-AD-A5EJ-01 19 7806378 7806378 A - CD209 3'UTR 0.36 TCGA-AD-A5EJ-01 19 7830675 7830675 A G CLEC4M Silent p.A122A 0.11 TCGA-AD-A5EJ-01 19 7928137 7928137 A - EVI5L Frame_Shift_Del p.K704Rfs*7 0.17 TCGA-AD-A5EJ-01 19 8555084 8555084 G T PRAM1 Missense_Mutation p.L668M 0.38 tolerated_low_confidence(0.09) possibly_damaging(0.655) TCGA-AD-A5EJ-01 19 9049520 9049520 T C MUC16 Missense_Mutation p.H10704R 0.35 benign(0.003) TCGA-AD-A5EJ-01 19 9066987 9066987 A T MUC16 Nonsense_Mutation p.L6820* 0.33 TCGA-AD-A5EJ-01 19 9492311 9492311 A T ZNF177 Missense_Mutation p.N435I 0.28 tolerated(0.4) probably_damaging(0.999) TCGA-AD-A5EJ-01 19 9801646 9801646 G T ZNF812 Missense_Mutation p.A178E 0.35 deleterious(0.02) possibly_damaging(0.887) TCGA-AD-A5EJ-01 1 100358073 100358073 C T AGL Missense_Mutation p.P1057S 0.42 deleterious(0.01) probably_damaging(0.973) TCGA-AD-A5EJ-01 1 100378028 100378028 A - AGL Frame_Shift_Del p.N1304Ifs*10 0.40 TCGA-AD-A5EJ-01 1 101004724 101004724 G A GPR88 Missense_Mutation p.A68T 0.05 deleterious(0) probably_damaging(0.994) TCGA-AD-A5EJ-01 1 101190444 101190444 A G VCAM1 Missense_Mutation p.Q309R 0.21 deleterious(0.02) benign(0.197) TCGA-AD-A5EJ-01 1 102462425 102462425 C T OLFM3 5'UTR 0.15 TCGA-AD-A5EJ-01 1 10523196 10523196 G A DFFA Silent p.D234D 0.30 TCGA-AD-A5EJ-01 1 10705067 10705067 G A CASZ1 Missense_Mutation p.L1259F 0.16 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 1 109607185 109607185 C T TAF13 Missense_Mutation p.R112Q 0.34 tolerated(0.4) benign(0.01) TCGA-AD-A5EJ-01 1 109811555 109811555 C T CELSR2 Missense_Mutation p.R2186C 0.36 deleterious(0) benign(0.077) TCGA-AD-A5EJ-01 1 110163704 110163704 G - AMPD2 Frame_Shift_Del p.A25Rfs*162 0.22 TCGA-AD-A5EJ-01 1 110168006 110168006 C T AMPD2 Missense_Mutation p.P112L 0.05 deleterious(0) benign(0.208) TCGA-AD-A5EJ-01 1 11150673 11150673 G A EXOSC10 Silent p.D232D 0.39 TCGA-AD-A5EJ-01 1 111854874 111854874 C T CHIA Missense_Mutation p.R40C 0.33 deleterious(0.03) possibly_damaging(0.778) TCGA-AD-A5EJ-01 1 11288779 11288779 C A MTOR Missense_Mutation p.Q992H 0.33 deleterious(0.05) probably_damaging(0.979) TCGA-AD-A5EJ-01 1 11318560 11318560 C T MTOR Missense_Mutation p.G85S 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-AD-A5EJ-01 1 113658998 113658998 G A LRIG2 Missense_Mutation p.A874T 0.15 tolerated(0.11) benign(0.067) TCGA-AD-A5EJ-01 1 114225919 114225919 A - MAGI3 Frame_Shift_Del p.N1245Ifs*65 0.24 TCGA-AD-A5EJ-01 1 1147434 1147434 C T TNFRSF4 Silent p.T174T 0.34 TCGA-AD-A5EJ-01 1 117150721 117150721 G A IGSF3 Silent p.S355S 0.40 TCGA-AD-A5EJ-01 1 11715896 11715896 G A FBXO44 Missense_Mutation p.A2T 0.29 deleterious_low_confidence(0.03) probably_damaging(0.956) TCGA-AD-A5EJ-01 1 117658238 117658238 C T TRIM45 Missense_Mutation p.V476I 0.32 tolerated(0.27) benign(0.001) TCGA-AD-A5EJ-01 1 12056267 12056267 G A MFN2 Silent p.L122L 0.11 TCGA-AD-A5EJ-01 1 12726365 12726365 C T AADACL4 Silent p.Y281Y 0.28 TCGA-AD-A5EJ-01 1 12943057 12943057 G T PRAMEF4 Silent p.A53A 0.21 TCGA-AD-A5EJ-01 1 1354439 1354439 G A ANKRD65 3'UTR 0.40 TCGA-AD-A5EJ-01 1 13910413 13910413 C - PDPN Frame_Shift_Del p.P40Hfs*16 0.31 TCGA-AD-A5EJ-01 1 1431042 1431042 C A ATAD3B Missense_Mutation p.L598M 0.10 deleterious_low_confidence(0.03) benign(0.282) TCGA-AD-A5EJ-01 1 145440999 145440999 T C TXNIP Silent p.P362P 0.14 TCGA-AD-A5EJ-01 1 149871801 149871801 C T BOLA1 Silent p.G63G 0.36 TCGA-AD-A5EJ-01 1 150230506 150230506 A G CA14 5'UTR 0.32 TCGA-AD-A5EJ-01 1 151158379 151158379 G A VPS72 Silent p.D55D 0.30 TCGA-AD-A5EJ-01 1 151261880 151261881 AC - ZNF687 Frame_Shift_Del p.T834Sfs*25 0.24 TCGA-AD-A5EJ-01 1 151413450 151413450 G A POGZ Silent p.S79S 0.18 TCGA-AD-A5EJ-01 1 151680363 151680363 G A CELF3 Nonsense_Mutation p.R179* 0.13 TCGA-AD-A5EJ-01 1 151810336 151810336 C T C2CD4D 3'UTR 0.33 TCGA-AD-A5EJ-01 1 151847389 151847389 A G THEM4 Missense_Mutation p.L233P 0.26 deleterious(0) probably_damaging(0.982) TCGA-AD-A5EJ-01 1 153431447 153431447 C T S100A7 Missense_Mutation p.D15N 0.37 tolerated(0.49) benign(0.009) TCGA-AD-A5EJ-01 1 153610673 153610673 G A CHTOP Intron 0.21 TCGA-AD-A5EJ-01 1 153789892 153789892 G A GATAD2B Missense_Mutation p.R286C 0.28 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 1 153905777 153905777 T G DENND4B Missense_Mutation p.S1117R 0.14 deleterious(0.02) probably_damaging(0.986) TCGA-AD-A5EJ-01 1 154744869 154744869 G T KCNN3 Missense_Mutation p.L344I 0.35 tolerated(0.12) probably_damaging(0.99) TCGA-AD-A5EJ-01 1 155005169 155005169 G A DCST2 Missense_Mutation p.S172L 0.35 deleterious(0) benign(0.421) TCGA-AD-A5EJ-01 1 155013956 155013956 G A DCST1 Silent p.T205T 0.36 TCGA-AD-A5EJ-01 1 155217533 155217533 G C FAM189B 3'UTR 0.38 TCGA-AD-A5EJ-01 1 155227153 155227153 G A SCAMP3 Silent p.F234F 0.22 TCGA-AD-A5EJ-01 1 155642453 155642453 G A YY1AP1 Silent p.L299L 0.29 TCGA-AD-A5EJ-01 1 156180110 156180110 T A SLC25A44 Missense_Mutation p.L278H 0.38 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 1 156235772 156235772 A G SMG5 Missense_Mutation p.L552P 0.26 tolerated(0.23) benign(0.126) TCGA-AD-A5EJ-01 1 156639403 156639403 G A NES Missense_Mutation p.A1526V 0.32 tolerated(0.07) benign(0.008) TCGA-AD-A5EJ-01 1 156756687 156756687 T C PRCC Silent p.D268D 0.48 TCGA-AD-A5EJ-01 1 156786532 156786532 G T SH2D2A 5'UTR 0.28 TCGA-AD-A5EJ-01 1 156815745 156815745 G A INSRR Silent p.R659R 0.38 TCGA-AD-A5EJ-01 1 156843672 156843672 C A NTRK1 Silent p.P366P 0.35 TCGA-AD-A5EJ-01 1 156884483 156884483 C - PEAR1 Frame_Shift_Del p.G1005Afs*57 0.23 TCGA-AD-A5EJ-01 1 156905712 156905713 - C ARHGEF11 3'UTR 0.24 TCGA-AD-A5EJ-01 1 15789274 15789274 G A CELA2A Missense_Mutation p.V92I 0.34 tolerated(0.22) benign(0) TCGA-AD-A5EJ-01 1 158669824 158669824 C A OR6K2 Nonsense_Mutation p.E207* 0.13 TCGA-AD-A5EJ-01 1 159015241 159015241 G A IFI16 Missense_Mutation p.S495N 0.33 deleterious(0.03) benign(0.188) TCGA-AD-A5EJ-01 1 15909826 15909826 C - AGMAT Frame_Shift_Del p.A113Pfs*12 0.23 TCGA-AD-A5EJ-01 1 159505063 159505063 A G OR10J5 Silent p.T245T 0.35 TCGA-AD-A5EJ-01 1 159847152 159847152 T C CCDC19 Missense_Mutation p.Y382C 0.15 deleterious(0.04) probably_damaging(0.928) TCGA-AD-A5EJ-01 1 160063010 160063010 G A IGSF8 Missense_Mutation p.A339V 0.35 tolerated(0.74) probably_damaging(0.993) TCGA-AD-A5EJ-01 1 160261229 160261229 G A COPA Missense_Mutation p.R1115C 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-AD-A5EJ-01 1 1602975 1602975 G A SLC35E2B Missense_Mutation p.A227V 0.28 deleterious(0.02) probably_damaging(0.955) TCGA-AD-A5EJ-01 1 160593919 160593919 T C SLAMF1 Missense_Mutation p.I253V 0.36 tolerated(0.39) benign(0.004) TCGA-AD-A5EJ-01 1 161145720 161145720 G A B4GALT3 Missense_Mutation p.P44L 0.29 deleterious(0.01) possibly_damaging(0.57) TCGA-AD-A5EJ-01 1 161163164 161163164 C T ADAMTS4 Missense_Mutation p.E584K 0.28 deleterious(0.01) possibly_damaging(0.894) TCGA-AD-A5EJ-01 1 161176249 161176249 G A NDUFS2 Silent p.G85G 0.28 TCGA-AD-A5EJ-01 1 162337227 162337227 C A NOS1AP Silent p.G497G 0.20 TCGA-AD-A5EJ-01 1 163122455 163122455 T - RGS5 Frame_Shift_Del p.N90Tfs*44 0.16 TCGA-AD-A5EJ-01 1 16459728 16459728 A G EPHA2 Missense_Mutation p.M667T 0.29 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 1 166135235 166135235 C A FAM78B Missense_Mutation p.S84I 0.14 deleterious(0) possibly_damaging(0.466) TCGA-AD-A5EJ-01 1 166818601 166818601 T C POGK Missense_Mutation p.V262A 0.37 tolerated(0.07) probably_damaging(0.973) TCGA-AD-A5EJ-01 1 16946341 16946341 T C RP5-1182A14.5 3'Flank 0.09 TCGA-AD-A5EJ-01 1 169499006 169499006 T - F5 Frame_Shift_Del p.G1754Efs*13 0.27 TCGA-AD-A5EJ-01 1 169511389 169511389 C T F5 Missense_Mutation p.R980H 0.34 tolerated(0.06) benign(0.025) TCGA-AD-A5EJ-01 1 169773244 169773244 T C C1orf112 Missense_Mutation p.L114S 0.11 deleterious(0) probably_damaging(0.978) TCGA-AD-A5EJ-01 1 169798452 169798452 T C C1orf112 Silent p.G392G 0.32 TCGA-AD-A5EJ-01 1 173174486 173174486 T C TNFSF4 Intron 0.30 TCGA-AD-A5EJ-01 1 173931048 173931048 G A RC3H1 Missense_Mutation p.R673C 0.34 deleterious(0) probably_damaging(0.912) TCGA-AD-A5EJ-01 1 174274148 174274148 G A RABGAP1L Missense_Mutation p.A450T 0.36 tolerated(0.61) benign(0.001) TCGA-AD-A5EJ-01 1 174606608 174606608 G A RABGAP1L Silent p.S602S 0.05 TCGA-AD-A5EJ-01 1 175956108 175956108 C A RFWD2 Missense_Mutation p.A702S 0.08 tolerated(0.05) possibly_damaging(0.67) TCGA-AD-A5EJ-01 1 17597617 17597617 G A PADI3 Missense_Mutation p.G331S 0.36 tolerated(0.33) benign(0.426) TCGA-AD-A5EJ-01 1 176740116 176740116 G T PAPPA2 Missense_Mutation p.W1505C 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-AD-A5EJ-01 1 177133606 177133606 C T ASTN1 Silent p.S69S 0.34 TCGA-AD-A5EJ-01 1 177936828 177936828 A G SEC16B Silent p.L97L 0.15 TCGA-AD-A5EJ-01 1 178427632 178427632 A G RASAL2 Missense_Mutation p.S1069G 0.49 tolerated(0.07) benign(0.006) TCGA-AD-A5EJ-01 1 178848089 178848091 AGA - RALGPS2 In_Frame_Del p.E268del 0.17 TCGA-AD-A5EJ-01 1 17944938 17944938 G A ARHGEF10L Intron 0.27 TCGA-AD-A5EJ-01 1 179990037 179990037 G A CEP350 Missense_Mutation p.G1043E 0.19 benign(0.394) TCGA-AD-A5EJ-01 1 180023063 180023063 A - CEP350 Frame_Shift_Del p.K1725Nfs*24 0.26 TCGA-AD-A5EJ-01 1 180044289 180044289 G T CEP350 Missense_Mutation p.W1900C 0.33 probably_damaging(0.999) TCGA-AD-A5EJ-01 1 182517930 182517930 C A RGSL1 Silent p.V968V 0.37 TCGA-AD-A5EJ-01 1 182845332 182845333 - T DHX9 Frame_Shift_Ins p.L657Ffs*44 0.28 TCGA-AD-A5EJ-01 1 182849707 182849707 G A DHX9 Missense_Mutation p.R863H 0.35 deleterious(0.05) probably_damaging(0.985) TCGA-AD-A5EJ-01 1 184688314 184688314 T - EDEM3 Frame_Shift_Del p.K381Nfs*22 0.22 TCGA-AD-A5EJ-01 1 184690450 184690450 A G EDEM3 Silent p.D308D 0.08 TCGA-AD-A5EJ-01 1 186292894 186292894 G A TPR Missense_Mutation p.P2074L 0.20 benign(0.005) TCGA-AD-A5EJ-01 1 186332019 186332020 - T TPR Frame_Shift_Ins p.G216Rfs*3 0.23 TCGA-AD-A5EJ-01 1 193065778 193065778 T - GLRX2 Frame_Shift_Del p.S159Vfs*22 0.35 TCGA-AD-A5EJ-01 1 19419377 19419377 C T UBR4 Missense_Mutation p.R4716H 0.06 probably_damaging(0.991) TCGA-AD-A5EJ-01 1 19600407 19600407 G A AKR7L 5'UTR 0.34 TCGA-AD-A5EJ-01 1 197145703 197145703 T - ZBTB41 Frame_Shift_Del p.I624Yfs*88 0.25 TCGA-AD-A5EJ-01 1 197390140 197390140 C T CRB1 Silent p.C394C 0.33 TCGA-AD-A5EJ-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.22 TCGA-AD-A5EJ-01 1 201437534 201437534 G A PHLDA3 Silent p.S127S 0.35 TCGA-AD-A5EJ-01 1 201869132 201869132 C T LMOD1 Missense_Mutation p.V337I 0.30 benign(0.051) TCGA-AD-A5EJ-01 1 203025986 203025986 G A PPFIA4 Missense_Mutation p.R266H 0.37 deleterious(0) possibly_damaging(0.557) TCGA-AD-A5EJ-01 1 203144807 203144808 - T MYBPH Frame_Shift_Ins p.T26Nfs*37 0.25 TCGA-AD-A5EJ-01 1 203816474 203816474 G A ZC3H11A Missense_Mutation p.R402H 0.38 tolerated(0.11) possibly_damaging(0.585) TCGA-AD-A5EJ-01 1 204085768 204085768 G A SOX13 Silent p.Q184Q 0.34 TCGA-AD-A5EJ-01 1 204426889 204426889 G - PIK3C2B Frame_Shift_Del p.C561Afs*18 0.28 TCGA-AD-A5EJ-01 1 205052667 205052667 A G TMEM81 3'UTR 0.15 TCGA-AD-A5EJ-01 1 205073045 205073045 G A RBBP5 Silent p.N154N 0.34 TCGA-AD-A5EJ-01 1 205117459 205117459 C T DSTYK Missense_Mutation p.D826N 0.37 deleterious(0) probably_damaging(0.957) TCGA-AD-A5EJ-01 1 205225540 205225540 C T TMCC2 Intron 0.31 TCGA-AD-A5EJ-01 1 205632400 205632400 G A SLC45A3 Silent p.C173C 0.40 TCGA-AD-A5EJ-01 1 205696911 205696911 C T NUCKS1 Silent p.S30S 0.33 TCGA-AD-A5EJ-01 1 206658635 206658635 G T IKBKE Missense_Mutation p.E536D 0.32 tolerated(0.08) benign(0.016) TCGA-AD-A5EJ-01 1 206758543 206758543 C - RASSF5 Frame_Shift_Del p.L342Sfs*18 0.21 TCGA-AD-A5EJ-01 1 206905540 206905540 T C MAPKAPK2 Intron 0.22 TCGA-AD-A5EJ-01 1 206972216 206972217 - CA IL19 5'UTR 0.29 TCGA-AD-A5EJ-01 1 207139142 207139143 GA - FCAMR Frame_Shift_Del p.L77Pfs*91 0.30 TCGA-AD-A5EJ-01 1 207643446 207643446 G A CR2 Silent p.K408K 0.37 TCGA-AD-A5EJ-01 1 207850832 207850832 C T CR1L Missense_Mutation p.R66C 0.39 deleterious(0.01) probably_damaging(0.915) TCGA-AD-A5EJ-01 1 21571523 21571523 C T ECE1 Missense_Mutation p.A413T 0.34 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 1 215914777 215914777 T G USH2A Missense_Mutation p.E3884A 0.08 benign(0.144) TCGA-AD-A5EJ-01 1 21795289 21795289 G A NBPF3 Missense_Mutation p.R81H 0.37 tolerated(0.19) benign(0) TCGA-AD-A5EJ-01 1 218520237 218520237 C A TGFB2 Missense_Mutation p.P65Q 0.37 tolerated(0.43) benign(0.037) TCGA-AD-A5EJ-01 1 220179495 220179495 G T EPRS Missense_Mutation p.L635I 0.22 tolerated(0.24) benign(0.118) TCGA-AD-A5EJ-01 1 220300157 220300157 C T IARS2 Silent p.S603S 0.32 TCGA-AD-A5EJ-01 1 220324698 220324698 T C RAB3GAP2 Silent p.K1359K 0.20 TCGA-AD-A5EJ-01 1 222802586 222802586 T A MIA3 Missense_Mutation p.I675K 0.13 tolerated(0.4) benign(0.002) TCGA-AD-A5EJ-01 1 223176649 223176649 C T DISP1 Missense_Mutation p.A637V 0.28 tolerated(0.18) probably_damaging(0.974) TCGA-AD-A5EJ-01 1 226109647 226109647 G A PYCR2 Nonsense_Mutation p.Q151* 0.19 TCGA-AD-A5EJ-01 1 228005093 228005093 C T PRSS38 Silent p.S165S 0.33 TCGA-AD-A5EJ-01 1 228109340 228109340 C T WNT9A Missense_Mutation p.R326H 0.31 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 1 228347077 228347077 A C GJC2 3'UTR 0.41 TCGA-AD-A5EJ-01 1 228462484 228462484 G A OBSCN Silent p.A2340A 0.40 TCGA-AD-A5EJ-01 1 228487677 228487677 C T OBSCN Silent p.P4523P 0.41 TCGA-AD-A5EJ-01 1 228529231 228529231 C T OBSCN Silent p.L6941L 0.44 TCGA-AD-A5EJ-01 1 22965550 22965550 G A C1QA Missense_Mutation p.V130M 0.40 tolerated(0.08) benign(0.128) TCGA-AD-A5EJ-01 1 22965716 22965716 G A C1QA Missense_Mutation p.R185H 0.28 tolerated(0.1) benign(0.064) TCGA-AD-A5EJ-01 1 23111490 23111490 C T EPHB2 Silent p.D244D 0.08 TCGA-AD-A5EJ-01 1 231487256 231487256 A - SPRTN Frame_Shift_Del p.G222Afs*7 0.27 TCGA-AD-A5EJ-01 1 231700444 231700444 T C TSNAX Silent p.R222R 0.39 TCGA-AD-A5EJ-01 1 232941734 232941734 G A MAP10 Missense_Mutation p.R322H 0.36 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 1 23520249 23520249 G A HTR1D Missense_Mutation p.A155V 0.29 deleterious(0.02) benign(0.208) TCGA-AD-A5EJ-01 1 235291935 235291935 G - TOMM20 Frame_Shift_Del p.N33Tfs*49 0.22 TCGA-AD-A5EJ-01 1 235897964 235897964 A - LYST Intron 0.21 TCGA-AD-A5EJ-01 1 236744586 236744586 G A HEATR1 Silent p.G897G 0.30 TCGA-AD-A5EJ-01 1 236972006 236972006 C A MTR Silent p.A114A 0.34 TCGA-AD-A5EJ-01 1 241753344 241753345 - T KMO Frame_Shift_Ins p.Q379Sfs*32 0.30 TCGA-AD-A5EJ-01 1 242042489 242042489 G A EXO1 Silent p.V651V 0.35 TCGA-AD-A5EJ-01 1 243319748 243319748 C A CEP170 Missense_Mutation p.R1229I 0.19 deleterious(0) possibly_damaging(0.905) TCGA-AD-A5EJ-01 1 24447939 24447939 G A IL22RA1 Missense_Mutation p.P361S 0.37 tolerated(0.15) benign(0.091) TCGA-AD-A5EJ-01 1 24484360 24484360 G T IFNLR1 Missense_Mutation p.P275T 0.21 tolerated(0.15) benign(0.232) TCGA-AD-A5EJ-01 1 248551625 248551625 C T OR2T6 Missense_Mutation p.A239V 0.11 deleterious(0.01) benign(0.25) TCGA-AD-A5EJ-01 1 25775375 25775375 T - TMEM57 Frame_Shift_Del p.F102Lfs*47 0.47 TCGA-AD-A5EJ-01 1 26514778 26514778 C - CNKSR1 Frame_Shift_Del p.P505Hfs*58 0.28 TCGA-AD-A5EJ-01 1 27736379 27736379 G T WASF2 Silent p.P382P 0.23 TCGA-AD-A5EJ-01 1 29543137 29543137 C T MECR Silent p.A79A 0.29 TCGA-AD-A5EJ-01 1 31734425 31734425 G C SNRNP40 Silent p.G325G 0.35 TCGA-AD-A5EJ-01 1 33161088 33161088 C T SYNC Missense_Mutation p.R204Q 0.29 tolerated(0.1) probably_damaging(1) TCGA-AD-A5EJ-01 1 33237879 33237879 C - KIAA1522 Frame_Shift_Del p.P1035Hfs*70 0.29 TCGA-AD-A5EJ-01 1 3350248 3350248 C T PRDM16 Missense_Mutation p.A1235V 0.29 deleterious(0) possibly_damaging(0.76) TCGA-AD-A5EJ-01 1 3390014 3390014 C T ARHGEF16 Silent p.C411C 0.35 TCGA-AD-A5EJ-01 1 34058033 34058033 G - CSMD2 Intron 0.26 TCGA-AD-A5EJ-01 1 34204914 34204914 G A CSMD2 Missense_Mutation p.P692L 0.36 deleterious(0.02) possibly_damaging(0.853) TCGA-AD-A5EJ-01 1 35370061 35370061 C T DLGAP3 Silent p.S308S 0.39 TCGA-AD-A5EJ-01 1 35370070 35370070 C T DLGAP3 Silent p.S305S 0.33 TCGA-AD-A5EJ-01 1 35453214 35453214 G A ZMYM6 Missense_Mutation p.R1157C 0.36 deleterious_low_confidence(0) benign(0.024) TCGA-AD-A5EJ-01 1 35454512 35454512 T - ZMYM6 Frame_Shift_Del p.N724Mfs*15 0.26 TCGA-AD-A5EJ-01 1 36921811 36921811 T C MRPS15 Missense_Mutation p.T205A 0.09 tolerated(1) benign(0.01) TCGA-AD-A5EJ-01 1 37959522 37959522 T G MEAF6 3'UTR 0.31 TCGA-AD-A5EJ-01 1 38447468 38447468 T C SF3A3 Missense_Mutation p.T162A 0.28 tolerated(0.41) benign(0.012) TCGA-AD-A5EJ-01 1 40230324 40230324 G A BMP8B Missense_Mutation p.P280L 0.35 deleterious(0.04) benign(0.08) TCGA-AD-A5EJ-01 1 40235402 40235402 A T OXCT2 Missense_Mutation p.L509H 0.28 deleterious(0) probably_damaging(0.983) TCGA-AD-A5EJ-01 1 40366800 40366800 C G MYCL Missense_Mutation p.E133Q 0.42 tolerated(0.35) probably_damaging(0.996) TCGA-AD-A5EJ-01 1 41107543 41107543 G A RIMS3 Missense_Mutation p.R19W 0.12 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-AD-A5EJ-01 1 41483318 41483318 C T SLFNL1 Missense_Mutation p.V316I 0.05 tolerated(0.67) benign(0.021) TCGA-AD-A5EJ-01 1 41503116 41503116 G T SCMH1 Silent p.T522T 0.14 TCGA-AD-A5EJ-01 1 43225056 43225056 T C LEPRE1 Silent p.E208E 0.16 TCGA-AD-A5EJ-01 1 44035417 44035417 C T PTPRF Missense_Mutation p.T179M 0.39 tolerated(0.23) possibly_damaging(0.554) TCGA-AD-A5EJ-01 1 44071253 44071253 C T PTPRF Missense_Mutation p.T1148M 0.38 tolerated(0.16) benign(0.004) TCGA-AD-A5EJ-01 1 44458013 44458013 C T CCDC24 Missense_Mutation p.R86W 0.26 deleterious(0.03) probably_damaging(0.994) TCGA-AD-A5EJ-01 1 44468548 44468548 G A SLC6A9 Nonsense_Mutation p.R307* 0.30 TCGA-AD-A5EJ-01 1 45477876 45477876 G - UROD 5'UTR 0.20 TCGA-AD-A5EJ-01 1 47013416 47013416 C - KNCN Frame_Shift_Del p.A98Lfs*? 0.24 TCGA-AD-A5EJ-01 1 47118273 47118273 G A ATPAF1 Missense_Mutation p.R213W 0.32 deleterious(0.02) probably_damaging(1) TCGA-AD-A5EJ-01 1 47759201 47759201 A G STIL Silent p.I267I 0.44 TCGA-AD-A5EJ-01 1 47905325 47905325 G A FOXD2 3'UTR 0.35 TCGA-AD-A5EJ-01 1 52704621 52704621 G A ZFYVE9 Missense_Mutation p.S511N 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 1 52826217 52826217 C A CC2D1B Missense_Mutation p.G161V 0.35 tolerated(0.08) benign(0.017) TCGA-AD-A5EJ-01 1 53343512 53343512 G T ZYG11A Missense_Mutation p.L567F 0.24 deleterious(0) probably_damaging(0.924) TCGA-AD-A5EJ-01 1 55172120 55172120 C T MROH7 Nonsense_Mutation p.R1193* 0.32 TCGA-AD-A5EJ-01 1 55565494 55565494 C T USP24 Missense_Mutation p.A1774T 0.31 deleterious(0) probably_damaging(0.993) TCGA-AD-A5EJ-01 1 59139301 59139301 G A MYSM1 Nonsense_Mutation p.R506* 0.09 TCGA-AD-A5EJ-01 1 5937202 5937202 C T NPHP4 Missense_Mutation p.R923H 0.37 tolerated(0.07) probably_damaging(0.982) TCGA-AD-A5EJ-01 1 6046350 6046350 C T NPHP4 5'UTR 0.33 TCGA-AD-A5EJ-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.61 TCGA-AD-A5EJ-01 1 65141639 65141639 C T CACHD1 Missense_Mutation p.T932I 0.43 tolerated(0.1) possibly_damaging(0.88) TCGA-AD-A5EJ-01 1 65323437 65323437 G A JAK1 Missense_Mutation p.R454W 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-AD-A5EJ-01 1 6680179 6680179 C T PHF13 Missense_Mutation p.T153M 0.33 tolerated(0.36) benign(0.002) TCGA-AD-A5EJ-01 1 6688731 6688731 G A THAP3 Missense_Mutation p.A83T 0.37 tolerated(0.21) possibly_damaging(0.849) TCGA-AD-A5EJ-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.21 TCGA-AD-A5EJ-01 1 68895536 68895536 C T RPE65 Missense_Mutation p.D509N 0.29 tolerated(0.35) benign(0.006) TCGA-AD-A5EJ-01 1 70504419 70504419 C - LRRC7 Frame_Shift_Del p.L935* 0.22 TCGA-AD-A5EJ-01 1 70504692 70504693 - A LRRC7 Frame_Shift_Ins p.V1027Sfs*5 0.42 TCGA-AD-A5EJ-01 1 75214478 75214478 C T TYW3 Missense_Mutation p.T133M 0.33 deleterious(0) probably_damaging(0.941) TCGA-AD-A5EJ-01 1 7723879 7723879 A G CAMTA1 Silent p.S424S 0.14 TCGA-AD-A5EJ-01 1 77629565 77629565 C T PIGK Missense_Mutation p.A184T 0.33 deleterious(0.01) probably_damaging(0.937) TCGA-AD-A5EJ-01 1 78162897 78162897 A - USP33 3'UTR 0.33 TCGA-AD-A5EJ-01 1 78392424 78392424 A - NEXN Frame_Shift_Del p.E240Nfs*8 0.24 TCGA-AD-A5EJ-01 1 78401649 78401649 A - NEXN Frame_Shift_Del p.I467* 0.29 TCGA-AD-A5EJ-01 1 79116116 79116116 T - IFI44 Frame_Shift_Del p.F80Lfs*13 0.17 TCGA-AD-A5EJ-01 1 8025475 8025476 - A PARK7 Frame_Shift_Ins p.E64Rfs*5 0.13 TCGA-AD-A5EJ-01 1 82432276 82432277 - C LPHN2 Frame_Shift_Ins p.L762Pfs*5 0.21 TCGA-AD-A5EJ-01 1 82436204 82436204 T G LPHN2 Nonsense_Mutation p.Y963* 0.17 TCGA-AD-A5EJ-01 1 89270078 89270078 G A PKN2 Missense_Mutation p.R429H 0.30 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 1 89618076 89618076 C A GBP7 Missense_Mutation p.S167I 0.04 tolerated(0.06) benign(0.023) TCGA-AD-A5EJ-01 1 94037376 94037376 T C BCAR3 Missense_Mutation p.I609V 0.15 tolerated(0.39) benign(0.006) TCGA-AD-A5EJ-01 1 94668100 94668100 T - ARHGAP29 Frame_Shift_Del p.V382* 0.24 TCGA-AD-A5EJ-01 1 949469 949469 G A ISG15 Missense_Mutation p.G37S 0.17 deleterious(0.04) possibly_damaging(0.644) TCGA-AD-A5EJ-01 1 97278429 97278429 A - PTBP2 Frame_Shift_Del p.N446Ifs*21 0.18 TCGA-AD-A5EJ-01 20 1184271 1184272 - T C20orf202 Frame_Shift_Ins p.L38Ffs*10 0.11 TCGA-AD-A5EJ-01 20 1285893 1285893 G A SNPH Missense_Mutation p.R227H 0.37 tolerated(0.11) benign(0.014) TCGA-AD-A5EJ-01 20 1617910 1617910 G T SIRPG Intron 0.26 TCGA-AD-A5EJ-01 20 21687680 21687680 C A PAX1 Silent p.G297G 0.28 TCGA-AD-A5EJ-01 20 23066657 23066657 C - CD93 Frame_Shift_Del p.G58Afs*6 0.28 TCGA-AD-A5EJ-01 20 2688601 2688601 C A EBF4 Silent p.I137I 0.33 TCGA-AD-A5EJ-01 20 309000 309000 C T SOX12 3'UTR 0.21 TCGA-AD-A5EJ-01 20 32295627 32295627 C T PXMP4 Missense_Mutation p.R175Q 0.34 tolerated(0.29) benign(0.006) TCGA-AD-A5EJ-01 20 33147570 33147572 CTT - MAP1LC3A In_Frame_Del p.F84del 0.34 TCGA-AD-A5EJ-01 20 33508835 33508835 C T ACSS2 Silent p.D403D 0.32 TCGA-AD-A5EJ-01 20 33734703 33734703 T C EDEM2 Missense_Mutation p.D48G 0.29 deleterious(0.03) benign(0.098) TCGA-AD-A5EJ-01 20 33862153 33862153 G A MMP24 Missense_Mutation p.R560H 0.28 deleterious(0) probably_damaging(0.91) TCGA-AD-A5EJ-01 20 34022103 34022103 A C GDF5 Nonsense_Mutation p.Y370* 0.05 TCGA-AD-A5EJ-01 20 34050180 34050180 A G CEP250 5'UTR 0.26 TCGA-AD-A5EJ-01 20 34208803 34208803 C - SPAG4 Frame_Shift_Del p.P393Qfs*7 0.23 TCGA-AD-A5EJ-01 20 35742484 35742484 T G MROH8 Missense_Mutation p.N894T 0.18 tolerated(0.37) benign(0.108) TCGA-AD-A5EJ-01 20 36031660 36031660 C A SRC Missense_Mutation p.L497I 0.33 tolerated(1) probably_damaging(0.997) TCGA-AD-A5EJ-01 20 37146233 37146233 C - RALGAPB Frame_Shift_Del p.P381Hfs*11 0.27 TCGA-AD-A5EJ-01 20 37150173 37150173 G A RALGAPB Missense_Mutation p.R484Q 0.29 tolerated(0.06) possibly_damaging(0.573) TCGA-AD-A5EJ-01 20 37357248 37357248 T C SLC32A1 Missense_Mutation p.L515P 0.37 deleterious(0) probably_damaging(0.993) TCGA-AD-A5EJ-01 20 37378732 37378732 T - ACTR5 Frame_Shift_Del p.F153Lfs*13 0.23 TCGA-AD-A5EJ-01 20 37400339 37400339 C A ACTR5 Missense_Mutation p.H568Q 0.37 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 20 40050362 40050362 T C CHD6 Missense_Mutation p.K1638R 0.36 tolerated_low_confidence(0.08) benign(0.002) TCGA-AD-A5EJ-01 20 4162990 4162990 C T SMOX Silent p.H288H 0.19 TCGA-AD-A5EJ-01 20 42089660 42089660 G A SRSF6 Missense_Mutation p.R331H 0.23 tolerated_low_confidence(0.06) unknown(0) TCGA-AD-A5EJ-01 20 42354972 42354972 A - GTSF1L Frame_Shift_Del p.P122Lfs*50 0.22 TCGA-AD-A5EJ-01 20 43933304 43933304 G A MATN4 Silent p.N69N 0.28 TCGA-AD-A5EJ-01 20 44002582 44002582 T C TP53TG5 Missense_Mutation p.R280G 0.23 deleterious_low_confidence(0.01) benign(0.056) TCGA-AD-A5EJ-01 20 44314552 44314552 A G WFDC10B Intron 0.21 TCGA-AD-A5EJ-01 20 44527103 44527103 C G CTSA 3'UTR 0.21 TCGA-AD-A5EJ-01 20 44669254 44669254 G A SLC12A5 Splice_Site p.X308_splice 0.30 TCGA-AD-A5EJ-01 20 44985273 44985273 A G SLC35C2 Missense_Mutation p.L92P 0.09 deleterious(0) probably_damaging(0.928) TCGA-AD-A5EJ-01 20 45169921 45169921 G A OCSTAMP Missense_Mutation p.P565S 0.19 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-AD-A5EJ-01 20 45192166 45192166 G - SLC13A3 Frame_Shift_Del p.L507Cfs*3 0.21 TCGA-AD-A5EJ-01 20 47990229 47990229 T C KCNB1 Missense_Mutation p.E623G 0.35 tolerated_low_confidence(0.13) benign(0.006) TCGA-AD-A5EJ-01 20 49577578 49577578 C T MOCS3 3'UTR 0.25 TCGA-AD-A5EJ-01 20 49620597 49620597 C T KCNG1 Silent p.S507S 0.11 TCGA-AD-A5EJ-01 20 50048960 50048960 C T NFATC2 Missense_Mutation p.G789D 0.36 deleterious(0) probably_damaging(0.973) TCGA-AD-A5EJ-01 20 50346509 50346509 T A ATP9A Missense_Mutation p.E26V 0.15 tolerated(0.21) benign(0.017) TCGA-AD-A5EJ-01 20 5157348 5157348 G A CDS2 Missense_Mutation p.V116I 0.14 tolerated(0.05) possibly_damaging(0.899) TCGA-AD-A5EJ-01 20 5170762 5170762 G T CDS2 Missense_Mutation p.S407I 0.35 deleterious(0.01) benign(0.211) TCGA-AD-A5EJ-01 20 57767352 57767352 C T ZNF831 Silent p.N426N 0.25 TCGA-AD-A5EJ-01 20 58444989 58444990 - T SYCP2 Frame_Shift_Ins p.I1202Nfs*14 0.24 TCGA-AD-A5EJ-01 20 58567469 58567469 C T CDH26 Silent p.S440S 0.29 TCGA-AD-A5EJ-01 20 60348061 60348061 G A CDH4 Silent p.P133P 0.29 TCGA-AD-A5EJ-01 20 60734000 60734000 T A SS18L1 Intron 0.33 TCGA-AD-A5EJ-01 20 60883521 60883521 A T ADRM1 Missense_Mutation p.K371M 0.10 deleterious(0.01) unknown(0) TCGA-AD-A5EJ-01 20 61525233 61525233 T C DIDO1 Silent p.T962T 0.38 TCGA-AD-A5EJ-01 20 62190548 62190548 G C HELZ2 3'Flank 0.21 TCGA-AD-A5EJ-01 20 62200195 62200195 T C HELZ2 Missense_Mutation p.S416G 0.40 tolerated(0.14) benign(0.242) TCGA-AD-A5EJ-01 20 62321432 62321432 C - RTEL1 Intron 0.27 TCGA-AD-A5EJ-01 20 62324609 62324609 C T RTEL1 Missense_Mutation p.R1013W 0.35 tolerated(0.11) benign(0.014) TCGA-AD-A5EJ-01 21 15872908 15872908 C A SAMSN1 Missense_Mutation p.R305M 0.48 tolerated(0.06) benign(0.135) TCGA-AD-A5EJ-01 21 28214271 28214271 C A ADAMTS1 Missense_Mutation p.M372I 0.07 deleterious(0.04) benign(0.011) TCGA-AD-A5EJ-01 21 31964994 31964994 A T KRTAP6-3 Missense_Mutation p.D70V 0.08 unknown(0) TCGA-AD-A5EJ-01 21 32582481 32582481 G A TIAM1 Silent p.C756C 0.50 TCGA-AD-A5EJ-01 21 33044195 33044195 G A SCAF4 Silent p.N987N 0.42 TCGA-AD-A5EJ-01 21 34165954 34165954 C A C21orf62 3'UTR 0.55 TCGA-AD-A5EJ-01 21 34444365 34444365 G A OLIG1 3'UTR 0.59 TCGA-AD-A5EJ-01 21 34799292 34799292 T - IFNGR2 Frame_Shift_Del p.C174Vfs*29 0.28 TCGA-AD-A5EJ-01 21 35247757 35247757 C T ITSN1 Missense_Mutation p.R1425W 0.52 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 21 38610790 38610790 T C DSCR3 Missense_Mutation p.T108A 0.46 deleterious(0) probably_damaging(0.974) TCGA-AD-A5EJ-01 21 40581948 40581948 T - BRWD1 Frame_Shift_Del p.A1391Rfs*13 0.35 TCGA-AD-A5EJ-01 21 43732185 43732185 G T TFF3 3'UTR 0.15 TCGA-AD-A5EJ-01 21 43862576 43862576 A - UBASH3A Frame_Shift_Del p.I503Sfs*25 0.21 TCGA-AD-A5EJ-01 21 47734643 47734643 A G C21orf58 Missense_Mutation p.I199T 0.08 deleterious(0) possibly_damaging(0.873) TCGA-AD-A5EJ-01 22 16449042 16449042 T C OR11H1 Missense_Mutation p.T255A 0.36 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 22 17590404 17590404 G - IL17RA Frame_Shift_Del p.G767Afs*70 0.11 TCGA-AD-A5EJ-01 22 18301493 18301493 G - MICAL3 Frame_Shift_Del p.A1313Lfs*17 0.19 TCGA-AD-A5EJ-01 22 18324677 18324677 C A MICAL3 Missense_Mutation p.E904D 0.10 benign(0.266) TCGA-AD-A5EJ-01 22 19026248 19026248 G A DGCR2 3'UTR 0.39 TCGA-AD-A5EJ-01 22 19118824 19118824 C T TSSK2 5'UTR 0.41 TCGA-AD-A5EJ-01 22 20073812 20073812 C - DGCR8 Frame_Shift_Del p.P110Lfs*9 0.14 TCGA-AD-A5EJ-01 22 21331025 21331025 G - AIFM3 Frame_Shift_Del p.E374Sfs*8 0.19 TCGA-AD-A5EJ-01 22 22280023 22280023 G A PPM1F Missense_Mutation p.R302C 0.23 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 22 23101571 23101571 G A IGLV2-14 Silent p.R75R 0.30 TCGA-AD-A5EJ-01 22 24219942 24219942 C T SLC2A11 Silent p.L198L 0.24 TCGA-AD-A5EJ-01 22 26164427 26164427 C - MYO18B Frame_Shift_Del p.A184Pfs*48 0.37 TCGA-AD-A5EJ-01 22 28379104 28379104 C T TTC28 Missense_Mutation p.G2184D 0.22 deleterious_low_confidence(0.03) benign(0.101) TCGA-AD-A5EJ-01 22 29439321 29439321 C T ZNRF3 Missense_Mutation p.P179L 0.28 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 22 29708063 29708063 T C GAS2L1 3'UTR 0.22 TCGA-AD-A5EJ-01 22 30032838 30032838 A G NF2 Silent p.T71T 0.33 TCGA-AD-A5EJ-01 22 30198069 30198069 G A ASCC2 Silent p.Y494Y 0.39 TCGA-AD-A5EJ-01 22 31486953 31486953 C - SMTN Frame_Shift_Del p.A318Pfs*39 0.23 TCGA-AD-A5EJ-01 22 31838050 31838050 G A EIF4ENIF1 Missense_Mutation p.T754I 0.10 deleterious(0.04) benign(0.027) TCGA-AD-A5EJ-01 22 31971228 31971228 C T SFI1 Nonsense_Mutation p.R312* 0.31 TCGA-AD-A5EJ-01 22 32017125 32017125 G A PISD Missense_Mutation p.A200V 0.41 tolerated(0.37) benign(0.002) TCGA-AD-A5EJ-01 22 32200841 32200841 G A DEPDC5 Missense_Mutation p.S386N 0.41 tolerated(0.25) benign(0.003) TCGA-AD-A5EJ-01 22 32853344 32853344 C A BPIFC Missense_Mutation p.W10C 0.39 deleterious(0.02) probably_damaging(0.969) TCGA-AD-A5EJ-01 22 32894262 32894262 C T FBXO7 Silent p.R438R 0.33 TCGA-AD-A5EJ-01 22 33828156 33828156 A G LARGE Missense_Mutation p.Y295H 0.34 deleterious(0) possibly_damaging(0.815) TCGA-AD-A5EJ-01 22 33960854 33960854 G A LARGE Missense_Mutation p.A256V 0.36 tolerated(0.13) benign(0.014) TCGA-AD-A5EJ-01 22 36055607 36055607 G A APOL6 Silent p.V332V 0.44 TCGA-AD-A5EJ-01 22 36701091 36701091 C T MYH9 Silent p.A739A 0.25 TCGA-AD-A5EJ-01 22 37425265 37425265 C T MPST Missense_Mutation p.P222S 0.28 tolerated(0.3) benign(0.126) TCGA-AD-A5EJ-01 22 38028845 38028845 C T GGA1 3'UTR 0.41 TCGA-AD-A5EJ-01 22 38046671 38046672 CC - SH3BP1 Frame_Shift_Del p.P513Gfs*24 0.18 TCGA-AD-A5EJ-01 22 38121460 38121460 G T TRIOBP Missense_Mutation p.G966V 0.16 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-AD-A5EJ-01 22 38525547 38525547 T G PLA2G6 Missense_Mutation p.K367T 0.31 deleterious(0.01) probably_damaging(1) TCGA-AD-A5EJ-01 22 39813797 39813797 G T TAB1 Missense_Mutation p.G165W 0.26 deleterious(0) probably_damaging(0.984) TCGA-AD-A5EJ-01 22 40719225 40719225 G T TNRC6B Nonsense_Mutation p.G1828* 0.29 TCGA-AD-A5EJ-01 22 40798182 40798182 G A SGSM3 Missense_Mutation p.E44K 0.05 deleterious(0.01) possibly_damaging(0.755) TCGA-AD-A5EJ-01 22 40816541 40816542 - G MKL1 Frame_Shift_Ins p.V308Sfs*9 0.41 TCGA-AD-A5EJ-01 22 42057350 42057350 C T XRCC6 Missense_Mutation p.A513V 0.44 tolerated(0.31) benign(0.002) TCGA-AD-A5EJ-01 22 42392902 42392902 G A SEPT3 Intron 0.32 TCGA-AD-A5EJ-01 22 42473376 42473377 - G FAM109B Frame_Shift_Ins p.G31Rfs*26 0.27 TCGA-AD-A5EJ-01 22 46658009 46658009 G A PKDREJ Missense_Mutation p.A404V 0.20 tolerated(0.33) benign(0.05) TCGA-AD-A5EJ-01 22 50170744 50170744 C T BRD1 Missense_Mutation p.R889H 0.34 tolerated(0.11) probably_damaging(0.935) TCGA-AD-A5EJ-01 22 50191477 50191477 G A BRD1 Missense_Mutation p.R692W 0.21 tolerated(0.1) benign(0.339) TCGA-AD-A5EJ-01 22 50728947 50728947 G T PLXNB2 Missense_Mutation p.R23S 0.15 tolerated(0.41) benign(0.14) TCGA-AD-A5EJ-01 22 50897721 50897721 C T SBF1 Silent p.T1263T 0.33 TCGA-AD-A5EJ-01 22 51064042 51064042 C T ARSA Missense_Mutation p.R392Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 22 51160785 51160785 G A SHANK3 Silent p.T1524T 0.32 TCGA-AD-A5EJ-01 2 102038235 102038235 G A RFX8 Missense_Mutation p.A63V 0.25 tolerated(0.41) benign(0.058) TCGA-AD-A5EJ-01 2 103040319 103040319 A C IL18RAP Missense_Mutation p.E40A 0.06 deleterious(0.01) probably_damaging(0.983) TCGA-AD-A5EJ-01 2 103057818 103057818 C T IL18RAP Silent p.D259D 0.09 TCGA-AD-A5EJ-01 2 108487679 108487679 G T RGPD4 Missense_Mutation p.E1073D 0.09 tolerated(0.33) benign(0.16) TCGA-AD-A5EJ-01 2 112786445 112786445 G T MERTK 3'UTR 0.11 TCGA-AD-A5EJ-01 2 113033525 113033525 C T ZC3H6 5'UTR 0.13 TCGA-AD-A5EJ-01 2 113532689 113532689 C - IL1A Frame_Shift_Del p.P258Hfs*27 0.28 TCGA-AD-A5EJ-01 2 119739230 119739230 A G MARCO Missense_Mutation p.Q300R 0.37 tolerated(0.35) benign(0.002) TCGA-AD-A5EJ-01 2 119915353 119915353 G T C1QL2 Missense_Mutation p.L165I 0.34 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 2 121989537 121989537 G A TFCP2L1 Silent p.H402H 0.37 TCGA-AD-A5EJ-01 2 125232358 125232358 T - CNTNAP5 Frame_Shift_Del p.L322* 0.26 TCGA-AD-A5EJ-01 2 125504907 125504907 G A CNTNAP5 Missense_Mutation p.E726K 0.27 tolerated(0.22) benign(0.056) TCGA-AD-A5EJ-01 2 125660517 125660517 C T CNTNAP5 Silent p.C1164C 0.25 TCGA-AD-A5EJ-01 2 125672808 125672808 C T CNTNAP5 3'UTR 0.25 TCGA-AD-A5EJ-01 2 128462095 128462095 G A WDR33 3'UTR 0.11 TCGA-AD-A5EJ-01 2 128462192 128462192 A - WDR33 3'UTR 0.36 TCGA-AD-A5EJ-01 2 132021078 132021078 A - POTEE Frame_Shift_Del p.K686Rfs*6 0.08 TCGA-AD-A5EJ-01 2 132259053 132259053 G - AC093838.4 RNA 0.23 TCGA-AD-A5EJ-01 2 136479529 136479529 C T R3HDM1 Nonsense_Mutation p.Q938* 0.32 TCGA-AD-A5EJ-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.63 TCGA-AD-A5EJ-01 2 1497660 1497660 G A TPO Missense_Mutation p.A619T 0.09 tolerated(0.28) benign(0.158) TCGA-AD-A5EJ-01 2 150071081 150071081 G A LYPD6B Missense_Mutation p.G161R 0.29 probably_damaging(1) TCGA-AD-A5EJ-01 2 152273411 152273411 G A RIF1 Missense_Mutation p.V167I 0.33 tolerated(1) benign(0) TCGA-AD-A5EJ-01 2 152423815 152423815 G A NEB Missense_Mutation p.S6008L 0.35 probably_damaging(0.919) TCGA-AD-A5EJ-01 2 152476228 152476228 C G NEB Missense_Mutation p.A3537P 0.29 probably_damaging(0.993) TCGA-AD-A5EJ-01 2 160585675 160585675 T C MARCH7 Missense_Mutation p.S48P 0.32 tolerated(0.06) benign(0.007) TCGA-AD-A5EJ-01 2 160673462 160673462 T - LY75-CD302 Frame_Shift_Del p.K1412Rfs*2 0.32 TCGA-AD-A5EJ-01 2 16086045 16086045 C T MYCN Silent p.H407H 0.34 TCGA-AD-A5EJ-01 2 162036165 162036165 C T TANK 5'UTR 0.32 TCGA-AD-A5EJ-01 2 162087741 162087741 G A TANK Silent p.T260T 0.20 TCGA-AD-A5EJ-01 2 1653174 1653174 G A PXDN Missense_Mutation p.P793L 0.14 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 2 1653181 1653181 C T PXDN Missense_Mutation p.A791T 0.31 tolerated(0.13) benign(0.001) TCGA-AD-A5EJ-01 2 166848164 166848164 C T SCN1A Missense_Mutation p.R1874Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 2 170806185 170806185 G A UBR3 Missense_Mutation p.R1052H 0.32 deleterious(0.02) probably_damaging(0.991) TCGA-AD-A5EJ-01 2 172549339 172549339 A G DYNC1I2 Missense_Mutation p.E54G 0.39 tolerated(0.07) benign(0.007) TCGA-AD-A5EJ-01 2 174081922 174081922 C T MLTK Nonsense_Mutation p.R311* 0.20 TCGA-AD-A5EJ-01 2 179417446 179417446 C T TTN Missense_Mutation p.V30061I 0.40 TCGA-AD-A5EJ-01 2 179427726 179427726 C G TTN Missense_Mutation p.K27711N 0.35 TCGA-AD-A5EJ-01 2 179479068 179479068 G - TTN Frame_Shift_Del p.G16353Dfs*11 0.21 TCGA-AD-A5EJ-01 2 179528601 179528601 G A TTN Silent p.R12131R 0.28 TCGA-AD-A5EJ-01 2 179611798 179611798 G - TTN Intron 0.26 TCGA-AD-A5EJ-01 2 179611811 179611811 A G TTN Intron 0.23 TCGA-AD-A5EJ-01 2 179642043 179642043 A T TTN Silent p.A1549A 0.31 TCGA-AD-A5EJ-01 2 182322501 182322501 C A ITGA4 Missense_Mutation p.S40R 0.36 tolerated(0.36) benign(0.346) TCGA-AD-A5EJ-01 2 186673703 186673703 A G FSIP2 Missense_Mutation p.E6646G 0.32 possibly_damaging(0.612) TCGA-AD-A5EJ-01 2 1914066 1914066 T - MYT1L Frame_Shift_Del p.K586Sfs*24 0.21 TCGA-AD-A5EJ-01 2 1926366 1926366 C T MYT1L Missense_Mutation p.R392Q 0.24 tolerated(0.1) probably_damaging(0.91) TCGA-AD-A5EJ-01 2 19553510 19553510 G A OSR1 Silent p.T19T 0.09 TCGA-AD-A5EJ-01 2 196825600 196825600 T - DNAH7 Frame_Shift_Del p.I759Sfs*5 0.09 TCGA-AD-A5EJ-01 2 197118721 197118721 G T HECW2 Missense_Mutation p.P1151H 0.16 deleterious(0) probably_damaging(0.98) TCGA-AD-A5EJ-01 2 198266175 198266175 A - SF3B1 Frame_Shift_Del p.F815Lfs*19 0.13 TCGA-AD-A5EJ-01 2 198570344 198570344 T C MARS2 Missense_Mutation p.L72P 0.29 deleterious(0.05) probably_damaging(0.951) TCGA-AD-A5EJ-01 2 201342446 201342446 A G SPATS2L Missense_Mutation p.N457D 0.27 tolerated(0.14) benign(0.046) TCGA-AD-A5EJ-01 2 201683505 201683505 A - BZW1 Frame_Shift_Del p.N317Tfs*11 0.33 TCGA-AD-A5EJ-01 2 202257675 202257675 G A TRAK2 Missense_Mutation p.T357I 0.06 tolerated(0.16) benign(0.001) TCGA-AD-A5EJ-01 2 202900773 202900773 T C FZD7 Missense_Mutation p.M468T 0.21 deleterious(0) possibly_damaging(0.893) TCGA-AD-A5EJ-01 2 203748346 203748346 C T WDR12 Silent p.L369L 0.37 TCGA-AD-A5EJ-01 2 20451293 20451293 A - PUM2 3'UTR 0.26 TCGA-AD-A5EJ-01 2 20648169 20648169 C T RHOB 3'UTR 0.39 TCGA-AD-A5EJ-01 2 206580990 206580990 G A NRP2 Missense_Mutation p.A109T 0.08 deleterious(0.02) probably_damaging(1) TCGA-AD-A5EJ-01 2 207827266 207827266 G A CPO Missense_Mutation p.M235I 0.25 tolerated(1) benign(0.001) TCGA-AD-A5EJ-01 2 208442378 208442378 A G CREB1 Missense_Mutation p.R294G 0.23 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 2 209025727 209025728 - A CRYGA Frame_Shift_Ins p.C109Lfs*12 0.22 TCGA-AD-A5EJ-01 2 209218780 209218780 G A PIKFYVE Silent p.S2001S 0.31 TCGA-AD-A5EJ-01 2 210887678 210887679 TA - KANSL1L Frame_Shift_Del p.N986Kfs*20 0.08 TCGA-AD-A5EJ-01 2 212488657 212488657 G A ERBB4 Missense_Mutation p.T731M 0.31 deleterious(0.01) possibly_damaging(0.885) TCGA-AD-A5EJ-01 2 216995707 216995707 T A XRCC5 Silent p.S349S 0.33 TCGA-AD-A5EJ-01 2 217526659 217526659 G A IGFBP2 Missense_Mutation p.E251K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 2 217724762 217724762 A C TNP1 5'UTR 0.21 TCGA-AD-A5EJ-01 2 219001835 219001835 A - CXCR2 3'UTR 0.31 TCGA-AD-A5EJ-01 2 219144833 219144833 A G TMBIM1 Silent p.Y73Y 0.30 TCGA-AD-A5EJ-01 2 219617532 219617532 G A TTLL4 Missense_Mutation p.R1008Q 0.37 deleterious(0.04) benign(0.094) TCGA-AD-A5EJ-01 2 219694778 219694778 G A PRKAG3 Missense_Mutation p.R186C 0.38 deleterious(0.01) benign(0.39) TCGA-AD-A5EJ-01 2 220089070 220089070 G A ATG9A Silent p.R341R 0.21 TCGA-AD-A5EJ-01 2 220428305 220428305 G A OBSL1 Missense_Mutation p.H818Y 0.38 tolerated(0.05) possibly_damaging(0.745) TCGA-AD-A5EJ-01 2 220499180 220499180 G A SLC4A3 Missense_Mutation p.V561M 0.22 deleterious(0.01) probably_damaging(1) TCGA-AD-A5EJ-01 2 223489025 223489025 A G FARSB Missense_Mutation p.M379T 0.07 tolerated(0.13) benign(0.008) TCGA-AD-A5EJ-01 2 225811604 225811604 A C DOCK10 Intron 0.29 TCGA-AD-A5EJ-01 2 225811605 225811605 C T DOCK10 Intron 0.30 TCGA-AD-A5EJ-01 2 227872271 227872271 C T COL4A4 Missense_Mutation p.A1615T 0.37 unknown(0) TCGA-AD-A5EJ-01 2 227984609 227984609 A G COL4A4 Splice_Site p.X124_splice 0.33 TCGA-AD-A5EJ-01 2 228777040 228777040 C A DAW1 Intron 0.38 TCGA-AD-A5EJ-01 2 230652221 230652221 T - TRIP12 Frame_Shift_Del p.K1590Nfs*4 0.28 TCGA-AD-A5EJ-01 2 231738163 231738163 G - ITM2C Frame_Shift_Del p.G53Afs*66 0.25 TCGA-AD-A5EJ-01 2 231740456 231740456 G A ITM2C Missense_Mutation p.R128H 0.30 tolerated(0.54) benign(0.002) TCGA-AD-A5EJ-01 2 232029972 232029972 A - PSMD1 Frame_Shift_Del p.K849Rfs*44 0.24 TCGA-AD-A5EJ-01 2 233345151 233345151 T C ECEL1 Missense_Mutation p.Y729C 0.46 tolerated(0.1) probably_damaging(0.969) TCGA-AD-A5EJ-01 2 233445881 233445881 T - AC073254.1 3'Flank 0.33 TCGA-AD-A5EJ-01 2 233546386 233546386 G A EFHD1 Missense_Mutation p.R226H 0.34 deleterious(0.01) benign(0.391) TCGA-AD-A5EJ-01 2 233635974 233635974 G A KCNJ13 Silent p.G33G 0.32 TCGA-AD-A5EJ-01 2 233659644 233659645 - T GIGYF2 Frame_Shift_Ins p.L512Ffs*6 0.23 TCGA-AD-A5EJ-01 2 235950683 235950683 C T SH3BP4 Missense_Mutation p.P424S 0.15 deleterious(0.03) benign(0.04) TCGA-AD-A5EJ-01 2 238303387 238303387 C T COL6A3 Silent p.A184A 0.31 TCGA-AD-A5EJ-01 2 238484063 238484063 T C RAB17 Missense_Mutation p.N166D 0.38 tolerated(0.5) benign(0.134) TCGA-AD-A5EJ-01 2 240500105 240500105 G A AC079612.1 5'UTR 0.42 TCGA-AD-A5EJ-01 2 241405062 241405062 G A GPC1 Missense_Mutation p.A481T 0.06 tolerated(0.97) benign(0.025) TCGA-AD-A5EJ-01 2 241452305 241452305 C - ANKMY1 Frame_Shift_Del p.V598Yfs*37 0.20 TCGA-AD-A5EJ-01 2 241512528 241512528 C T RNPEPL1 Intron 0.17 TCGA-AD-A5EJ-01 2 242438475 242438475 T C STK25 Missense_Mutation p.T234A 0.21 tolerated(0.08) benign(0.002) TCGA-AD-A5EJ-01 2 25457215 25457215 C T DNMT3A Missense_Mutation p.R891Q 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-AD-A5EJ-01 2 26712564 26712564 G A OTOF Silent p.D314D 0.29 TCGA-AD-A5EJ-01 2 27667249 27667249 T C IFT172 3'UTR 0.39 TCGA-AD-A5EJ-01 2 28561509 28561509 A G BRE 3'UTR 0.33 TCGA-AD-A5EJ-01 2 28865911 28865911 G A PLB1 Missense_Mutation p.R1454H 0.37 tolerated_low_confidence(0.12) benign(0.001) TCGA-AD-A5EJ-01 2 30863560 30863560 T - LCLAT1 3'UTR 0.33 TCGA-AD-A5EJ-01 2 32422776 32422776 C A SLC30A6 Missense_Mutation p.S222R 0.29 deleterious(0.01) benign(0.358) TCGA-AD-A5EJ-01 2 33500958 33500958 G T LTBP1 Missense_Mutation p.G987V 0.28 deleterious(0) probably_damaging(0.984) TCGA-AD-A5EJ-01 2 42990761 42990761 C T OXER1 Missense_Mutation p.A187T 0.31 deleterious(0.03) probably_damaging(0.962) TCGA-AD-A5EJ-01 2 44100956 44100956 G A ABCG8 Silent p.L414L 0.23 TCGA-AD-A5EJ-01 2 46739615 46739615 G A ATP6V1E2 Missense_Mutation p.A79V 0.41 deleterious(0.03) benign(0.365) TCGA-AD-A5EJ-01 2 48915468 48915468 C A LHCGR Nonsense_Mutation p.G490* 0.15 TCGA-AD-A5EJ-01 2 50850704 50850704 G A NRXN1 Silent p.Y327Y 0.30 TCGA-AD-A5EJ-01 2 55138130 55138130 T - EML6 Frame_Shift_Del p.F1152Lfs*10 0.33 TCGA-AD-A5EJ-01 2 55189708 55189708 A - EML6 Frame_Shift_Del p.N1675Mfs*7 0.18 TCGA-AD-A5EJ-01 2 56098194 56098194 G A EFEMP1 Silent p.G355G 0.20 TCGA-AD-A5EJ-01 2 5835011 5835011 T - SOX11 3'UTR 0.47 TCGA-AD-A5EJ-01 2 58468421 58468421 G A FANCL Missense_Mutation p.R10C 0.36 deleterious(0) possibly_damaging(0.88) TCGA-AD-A5EJ-01 2 61014680 61014680 A G PAPOLG Missense_Mutation p.I441V 0.40 tolerated(1) benign(0.01) TCGA-AD-A5EJ-01 2 61389729 61389729 T - C2orf74 Frame_Shift_Del p.L36Yfs*25 0.26 TCGA-AD-A5EJ-01 2 61475691 61475691 G A USP34 Missense_Mutation p.P2117S 0.26 tolerated(0.51) benign(0.011) TCGA-AD-A5EJ-01 2 64113482 64113485 CACT - UGP2 Frame_Shift_Del p.T296Nfs*6 0.27 TCGA-AD-A5EJ-01 2 669549 669549 A G TMEM18 3'UTR 0.33 TCGA-AD-A5EJ-01 2 67624643 67624643 G A ETAA1 Silent p.V21V 0.16 TCGA-AD-A5EJ-01 2 70444039 70444039 C T TIA1 Missense_Mutation p.A188T 0.39 tolerated(0.29) benign(0.029) TCGA-AD-A5EJ-01 2 71883333 71883333 C T DYSF Silent p.G1556G 0.45 TCGA-AD-A5EJ-01 2 74274174 74274174 C - TET3 Frame_Shift_Del p.Q244Rfs*162 0.21 TCGA-AD-A5EJ-01 2 74328859 74328859 C T TET3 Silent p.D1513D 0.36 TCGA-AD-A5EJ-01 2 74596450 74596450 G A DCTN1 Missense_Mutation p.R521C 0.19 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 2 74719132 74719132 C T TTC31 Missense_Mutation p.A293V 0.22 tolerated(0.21) benign(0.027) TCGA-AD-A5EJ-01 2 74742912 74742912 G A TLX2 Missense_Mutation p.A185T 0.24 deleterious(0.04) benign(0.349) TCGA-AD-A5EJ-01 2 74763556 74763556 G A LOXL3 Missense_Mutation p.R319W 0.41 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 2 74784077 74784077 C A DOK1 Missense_Mutation p.P428T 0.42 tolerated(0.53) benign(0.046) TCGA-AD-A5EJ-01 2 75107420 75107420 C T HK2 Missense_Mutation p.R432W 0.16 deleterious(0.05) benign(0.007) TCGA-AD-A5EJ-01 2 75196606 75196606 G A POLE4 3'UTR 0.08 TCGA-AD-A5EJ-01 2 77746438 77746438 A - LRRTM4 Frame_Shift_Del p.L186Wfs*20 0.23 TCGA-AD-A5EJ-01 2 84686381 84686381 G T SUCLG1 Missense_Mutation p.L5I 0.16 deleterious_low_confidence(0.05) unknown(0) TCGA-AD-A5EJ-01 2 84848408 84848408 T C DNAH6 Missense_Mutation p.C1296R 0.06 tolerated(0.24) benign(0.139) TCGA-AD-A5EJ-01 2 85892892 85892892 A C SFTPB Missense_Mutation p.L152R 0.35 deleterious(0) probably_damaging(0.992) TCGA-AD-A5EJ-01 2 86297391 86297391 C T POLR1A Missense_Mutation p.C539Y 0.37 tolerated(1) benign(0.34) TCGA-AD-A5EJ-01 2 86373195 86373195 A G IMMT Silent p.V553V 0.10 TCGA-AD-A5EJ-01 2 86479109 86479109 C T REEP1 Missense_Mutation p.A137T 0.04 tolerated(0.18) possibly_damaging(0.537) TCGA-AD-A5EJ-01 2 88056400 88056400 A - PLGLB2 3'UTR 0.15 TCGA-AD-A5EJ-01 2 8890342 8890342 G A KIDINS220 Missense_Mutation p.T1105M 0.18 deleterious(0.04) benign(0.302) TCGA-AD-A5EJ-01 2 8926140 8926140 T - KIDINS220 Frame_Shift_Del p.T654Hfs*34 0.16 TCGA-AD-A5EJ-01 2 89326856 89326856 A C IGKV3-11 Missense_Mutation p.L53V 0.20 tolerated(0.09) benign(0.125) TCGA-AD-A5EJ-01 2 95542532 95542532 C - TEKT4 3'UTR 0.31 TCGA-AD-A5EJ-01 2 96551827 96551827 T C ANKRD36C Silent p.T71T 0.12 TCGA-AD-A5EJ-01 2 97372981 97372981 C T LMAN2L 3'UTR 0.39 TCGA-AD-A5EJ-01 2 97507821 97507821 G - ANKRD23 Frame_Shift_Del p.R93Gfs*24 0.26 TCGA-AD-A5EJ-01 2 97638039 97638039 C T FAM178B Missense_Mutation p.V55M 0.42 tolerated_low_confidence(0.53) benign(0.004) TCGA-AD-A5EJ-01 2 99013075 99013075 G A CNGA3 Missense_Mutation p.R481H 0.18 deleterious(0.01) possibly_damaging(0.891) TCGA-AD-A5EJ-01 2 99725882 99725882 T G TSGA10 Missense_Mutation p.K7N 0.24 tolerated(0.28) possibly_damaging(0.607) TCGA-AD-A5EJ-01 3 10050259 10050260 - G AC022007.5 RNA 0.19 TCGA-AD-A5EJ-01 3 100567689 100567689 G A ABI3BP Missense_Mutation p.T469I 0.25 deleterious(0.02) possibly_damaging(0.507) TCGA-AD-A5EJ-01 3 102183086 102183086 T G ZPLD1 Missense_Mutation p.L267R 0.37 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 3 10392124 10392124 C A ATP2B2 Missense_Mutation p.E758D 0.06 tolerated(0.16) benign(0.007) TCGA-AD-A5EJ-01 3 10400426 10400426 G A ATP2B2 Silent p.N695N 0.32 TCGA-AD-A5EJ-01 3 10436244 10436244 C T ATP2B2 Intron 0.17 TCGA-AD-A5EJ-01 3 107776415 107776415 C T CD47 Silent p.A262A 0.31 TCGA-AD-A5EJ-01 3 108549566 108549566 C A TRAT1 Silent p.G19G 0.09 TCGA-AD-A5EJ-01 3 111667811 111667811 G A PHLDB2 Silent p.P840P 0.09 TCGA-AD-A5EJ-01 3 112185083 112185083 G T BTLA Missense_Mutation p.L248M 0.17 deleterious(0.04) possibly_damaging(0.849) TCGA-AD-A5EJ-01 3 112992013 112992013 C T BOC Silent p.S353S 0.38 TCGA-AD-A5EJ-01 3 113667810 113667810 G A ZDHHC23 Missense_Mutation p.R54Q 0.24 deleterious(0) probably_damaging(0.965) TCGA-AD-A5EJ-01 3 113798833 113798833 C A QTRTD1 Missense_Mutation p.P288H 0.08 deleterious(0) probably_damaging(0.997) TCGA-AD-A5EJ-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.22 TCGA-AD-A5EJ-01 3 11643436 11643436 C T VGLL4 Missense_Mutation p.S48N 0.10 tolerated(0.1) benign(0.018) TCGA-AD-A5EJ-01 3 119177057 119177057 T C TMEM39A Silent p.P48P 0.10 TCGA-AD-A5EJ-01 3 120876476 120876476 T C STXBP5L Splice_Site p.X293_splice 0.06 TCGA-AD-A5EJ-01 3 121376170 121376170 C A HCLS1 Missense_Mutation p.W38C 0.45 deleterious(0) possibly_damaging(0.759) TCGA-AD-A5EJ-01 3 121641670 121641670 C T SLC15A2 Nonsense_Mutation p.R277* 0.32 TCGA-AD-A5EJ-01 3 122296665 122296665 C T PARP15 Missense_Mutation p.R51W 0.32 deleterious_low_confidence(0.03) benign(0.245) TCGA-AD-A5EJ-01 3 122873873 122873873 C T PDIA5 Silent p.F443F 0.14 TCGA-AD-A5EJ-01 3 123418936 123418936 C T MYLK Missense_Mutation p.A1127T 0.16 tolerated(0.09) possibly_damaging(0.849) TCGA-AD-A5EJ-01 3 124201667 124201667 C T KALRN Missense_Mutation p.R1400W 0.27 deleterious(0) probably_damaging(0.973) TCGA-AD-A5EJ-01 3 124482306 124482306 G A ITGB5 3'UTR 0.38 TCGA-AD-A5EJ-01 3 125637770 125637770 G A FAM86JP Splice_Site 0.36 TCGA-AD-A5EJ-01 3 125694419 125694419 C A ROPN1B Missense_Mutation p.L44M 0.26 tolerated(0.19) benign(0.104) TCGA-AD-A5EJ-01 3 126155210 126155210 A G CCDC37 Missense_Mutation p.D600G 0.39 deleterious(0.01) benign(0.132) TCGA-AD-A5EJ-01 3 126726731 126726731 T C PLXNA1 Missense_Mutation p.L696P 0.12 tolerated(0.09) possibly_damaging(0.664) TCGA-AD-A5EJ-01 3 127703082 127703082 C A KBTBD12 Silent p.P611P 0.34 TCGA-AD-A5EJ-01 3 127703158 127703158 A C KBTBD12 3'UTR 0.07 TCGA-AD-A5EJ-01 3 12869016 12869016 A G CAND2 Silent p.S1096S 0.05 TCGA-AD-A5EJ-01 3 128852998 128852999 CT - ISY1 Frame_Shift_Del p.E216Gfs*58 0.31 TCGA-AD-A5EJ-01 3 132196737 132196737 G A DNAJC13 Splice_Site p.X850_splice 0.21 TCGA-AD-A5EJ-01 3 132215419 132215419 A C DNAJC13 Missense_Mutation p.K1356N 0.14 deleterious(0.01) benign(0.411) TCGA-AD-A5EJ-01 3 133647420 133647420 C T C3orf36 Silent p.A76A 0.08 TCGA-AD-A5EJ-01 3 134089677 134089677 G - AMOTL2 Frame_Shift_Del p.P200Lfs*19 0.29 TCGA-AD-A5EJ-01 3 137729144 137729144 G A CLDN18 Missense_Mutation p.G26E 0.36 tolerated(0.77) benign(0.03) TCGA-AD-A5EJ-01 3 138403508 138403508 C T PIK3CB Silent p.L758L 0.24 TCGA-AD-A5EJ-01 3 138403540 138403540 G A PIK3CB Nonsense_Mutation p.Q748* 0.21 TCGA-AD-A5EJ-01 3 13860736 13860736 A G WNT7A Missense_Mutation p.L252P 0.34 deleterious(0.03) possibly_damaging(0.548) TCGA-AD-A5EJ-01 3 138762837 138762837 C T PRR23C Missense_Mutation p.R209H 0.36 tolerated(0.54) benign(0.009) TCGA-AD-A5EJ-01 3 139108439 139108439 T C COPB2 5'UTR 0.14 TCGA-AD-A5EJ-01 3 140401710 140401710 C T TRIM42 Missense_Mutation p.R250C 0.31 deleterious(0) probably_damaging(0.912) TCGA-AD-A5EJ-01 3 140419903 140419903 A G TRIM42 3'UTR 0.56 TCGA-AD-A5EJ-01 3 141327431 141327431 G A RASA2 Missense_Mutation p.C706Y 0.33 deleterious(0.04) possibly_damaging(0.556) TCGA-AD-A5EJ-01 3 142122606 142122607 - A XRN1 Frame_Shift_Ins p.L671Ffs*30 0.23 TCGA-AD-A5EJ-01 3 142430755 142430755 A G PLS1 Missense_Mutation p.Y599C 0.34 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 3 143708700 143708701 - T C3orf58 3'UTR 0.16 TCGA-AD-A5EJ-01 3 14708323 14708323 C G CCDC174 Missense_Mutation p.P198R 0.35 tolerated(0.1) possibly_damaging(0.53) TCGA-AD-A5EJ-01 3 149089450 149089450 C T TM4SF1 Intron 0.31 TCGA-AD-A5EJ-01 3 149485697 149485697 C T ANKUB1 Missense_Mutation p.G251D 0.30 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 3 151545715 151545715 G A AADAC Missense_Mutation p.A319T 0.13 deleterious(0.03) probably_damaging(0.973) TCGA-AD-A5EJ-01 3 152150667 152150667 T A MBNL1 Silent p.A169A 0.36 TCGA-AD-A5EJ-01 3 152885729 152885729 A C RAP2B 3'UTR 0.38 TCGA-AD-A5EJ-01 3 154802055 154802055 C A MME Silent p.V33V 0.29 TCGA-AD-A5EJ-01 3 155547615 155547615 G A SLC33A1 Silent p.Y448Y 0.07 TCGA-AD-A5EJ-01 3 156979108 156979108 T C VEPH1 Missense_Mutation p.K773E 0.37 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 3 157160222 157160222 A C PTX3 Missense_Mutation p.R200S 0.15 tolerated(0.46) benign(0.007) TCGA-AD-A5EJ-01 3 159998573 159998573 C T IFT80 Missense_Mutation p.D516N 0.35 tolerated(0.07) benign(0.17) TCGA-AD-A5EJ-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.23 TCGA-AD-A5EJ-01 3 169557805 169557805 T - LRRC31 Frame_Shift_Del p.R542Efs*37 0.09 TCGA-AD-A5EJ-01 3 17053266 17053267 - T PLCL2 Frame_Shift_Ins p.D686* 0.19 TCGA-AD-A5EJ-01 3 17131376 17131376 A - PLCL2 Frame_Shift_Del p.A995Qfs*19 0.22 TCGA-AD-A5EJ-01 3 175042042 175042042 C T NAALADL2 Missense_Mutation p.P340S 0.10 tolerated(0.33) benign(0.002) TCGA-AD-A5EJ-01 3 178936083 178936083 A G PIK3CA Missense_Mutation p.E542G 0.34 tolerated(0.07) benign(0.286) TCGA-AD-A5EJ-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.32 tolerated(0.11) possibly_damaging(0.529) TCGA-AD-A5EJ-01 3 182989418 182989418 T - B3GNT5 3'UTR 0.35 TCGA-AD-A5EJ-01 3 183823167 183823167 C T HTR3E Silent p.T250T 0.13 TCGA-AD-A5EJ-01 3 183911408 183911408 C T ABCF3 Silent p.G684G 0.40 TCGA-AD-A5EJ-01 3 183960182 183960182 G A ALG3 3'UTR 0.15 TCGA-AD-A5EJ-01 3 184298645 184298645 C T EPHB3 Silent p.Y839Y 0.09 TCGA-AD-A5EJ-01 3 186947564 186947564 G A MASP1 3'Flank 0.30 TCGA-AD-A5EJ-01 3 192516328 192516328 C A MB21D2 Missense_Mutation p.Q441H 0.31 tolerated(0.17) benign(0.001) TCGA-AD-A5EJ-01 3 194062235 194062235 G A CPN2 Silent p.C399C 0.28 TCGA-AD-A5EJ-01 3 194325130 194325130 G T TMEM44 Missense_Mutation p.S401R 0.11 tolerated(0.06) benign(0.01) TCGA-AD-A5EJ-01 3 195778909 195778909 C T TFRC Silent p.T729T 0.40 TCGA-AD-A5EJ-01 3 196664485 196664485 G A NCBP2 Missense_Mutation p.R99W 0.25 tolerated(0.17) benign(0.218) TCGA-AD-A5EJ-01 3 196730948 196730948 T G MFI2 Missense_Mutation p.N654T 0.09 tolerated(0.26) benign(0.401) TCGA-AD-A5EJ-01 3 23541151 23541151 C - UBE2E2 Frame_Shift_Del p.P95Qfs*43 0.22 TCGA-AD-A5EJ-01 3 29910347 29910347 A G RBMS3 Splice_Site p.X213_splice 0.08 TCGA-AD-A5EJ-01 3 30842534 30842534 T G GADL1 Missense_Mutation p.Q366P 0.36 deleterious(0) possibly_damaging(0.532) TCGA-AD-A5EJ-01 3 33216511 33216511 G A SUSD5 Silent p.T155T 0.29 TCGA-AD-A5EJ-01 3 361509 361509 T C CHL1 Missense_Mutation p.L17P 0.31 tolerated(0.1) benign(0.373) TCGA-AD-A5EJ-01 3 37053348 37053348 A - MLH1 Frame_Shift_Del p.K196Nfs*6 0.21 TCGA-AD-A5EJ-01 3 37356964 37356964 C T GOLGA4 Missense_Mutation p.R452W 0.31 probably_damaging(0.979) TCGA-AD-A5EJ-01 3 38040426 38040426 C - VILL Frame_Shift_Del p.P323Rfs*9 0.19 TCGA-AD-A5EJ-01 3 38349170 38349170 C T SLC22A14 Missense_Mutation p.S245L 0.35 tolerated(0.16) benign(0.04) TCGA-AD-A5EJ-01 3 38518838 38518838 T G ACVR2B Missense_Mutation p.L38R 0.36 tolerated(0.53) benign(0.021) TCGA-AD-A5EJ-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.42 TCGA-AD-A5EJ-01 3 39145003 39145003 G T GORASP1 Silent p.P35P 0.11 TCGA-AD-A5EJ-01 3 40192658 40192658 C T MYRIP Missense_Mutation p.A151V 0.39 tolerated(0.09) benign(0.005) TCGA-AD-A5EJ-01 3 42906689 42906689 G A ACKR2 Missense_Mutation p.R232H 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-AD-A5EJ-01 3 42906764 42906764 T C ACKR2 Missense_Mutation p.V257A 0.37 tolerated(0.36) benign(0.054) TCGA-AD-A5EJ-01 3 44607052 44607052 C A RP11-944L7.5 Translation_Start_Site p.P1? 0.35 deleterious(0) probably_damaging(0.992) TCGA-AD-A5EJ-01 3 45823592 45823592 G T SLC6A20 Missense_Mutation p.P82Q 0.36 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 3 46416036 46416036 G A CCR5 3'UTR 0.39 TCGA-AD-A5EJ-01 3 46416385 46416385 G T CCR5 3'UTR 0.21 TCGA-AD-A5EJ-01 3 47378188 47378188 G T KLHL18 Missense_Mutation p.E354D 0.14 deleterious(0) probably_damaging(0.924) TCGA-AD-A5EJ-01 3 47888778 47888778 G A DHX30 Missense_Mutation p.A649T 0.18 tolerated(0.48) benign(0.003) TCGA-AD-A5EJ-01 3 48624676 48624676 G A COL7A1 Missense_Mutation p.T1029M 0.40 unknown(0) TCGA-AD-A5EJ-01 3 48629609 48629609 G A COL7A1 Missense_Mutation p.T389M 0.14 unknown(0) TCGA-AD-A5EJ-01 3 48916832 48916832 C A SLC25A20 Nonsense_Mutation p.G126* 0.14 TCGA-AD-A5EJ-01 3 49168416 49168416 G A LAMB2 Silent p.P294P 0.24 TCGA-AD-A5EJ-01 3 49278759 49278759 A C CCDC36 Missense_Mutation p.K111T 0.18 deleterious(0) probably_damaging(0.981) TCGA-AD-A5EJ-01 3 49866639 49866639 C T TRAIP Missense_Mutation p.R436H 0.35 tolerated(0.05) benign(0.232) TCGA-AD-A5EJ-01 3 50224092 50224092 C T SEMA3F Silent p.S620S 0.38 TCGA-AD-A5EJ-01 3 50313156 50313156 C T LSMEM2 5'Flank 0.26 TCGA-AD-A5EJ-01 3 50655080 50655080 G - MAPKAPK3 Frame_Shift_Del p.R31Gfs*9 0.26 TCGA-AD-A5EJ-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.22 TCGA-AD-A5EJ-01 3 51431680 51431680 T - RBM15B 3'UTR 0.34 TCGA-AD-A5EJ-01 3 52084997 52084997 T G DUSP7 Missense_Mutation p.K365T 0.38 deleterious(0) possibly_damaging(0.775) TCGA-AD-A5EJ-01 3 52087970 52087970 G A DUSP7 Missense_Mutation p.A313V 0.17 deleterious(0) probably_damaging(0.979) TCGA-AD-A5EJ-01 3 52425503 52425503 G T DNAH1 Silent p.T3312T 0.34 TCGA-AD-A5EJ-01 3 52543890 52543890 C T STAB1 Silent p.C784C 0.29 TCGA-AD-A5EJ-01 3 52745813 52745814 - A NEK4 Frame_Shift_Ins p.E836* 0.16 TCGA-AD-A5EJ-01 3 52861117 52861117 G A ITIH4 Silent p.G116G 0.36 TCGA-AD-A5EJ-01 3 52877789 52877789 T G TMEM110 Missense_Mutation p.N189T 0.05 deleterious(0) probably_damaging(0.946) TCGA-AD-A5EJ-01 3 53139803 53139803 C T RFT1 Silent p.V281V 0.24 TCGA-AD-A5EJ-01 3 53845488 53845488 G T CACNA1D 3'UTR 0.33 TCGA-AD-A5EJ-01 3 58156440 58156440 G - FLNB Frame_Shift_Del p.E2620Rfs*? 0.11 TCGA-AD-A5EJ-01 3 58899501 58899501 T G C3orf67 Silent p.S36S 0.22 TCGA-AD-A5EJ-01 3 71804033 71804033 C T GPR27 Missense_Mutation p.T278M 0.26 tolerated(0.56) benign(0.051) TCGA-AD-A5EJ-01 3 9034600 9034600 C - SRGAP3 Frame_Shift_Del p.V850* 0.26 TCGA-AD-A5EJ-01 3 9036209 9036209 T C SRGAP3 Splice_Site p.X743_splice 0.40 TCGA-AD-A5EJ-01 3 96706498 96706498 C T EPHA6 Missense_Mutation p.R259C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 3 9803385 9803385 G T CAMK1 Missense_Mutation p.D162E 0.33 deleterious(0.01) possibly_damaging(0.774) TCGA-AD-A5EJ-01 3 9848053 9848053 G A ARPC4 3'UTR 0.34 TCGA-AD-A5EJ-01 3 99568179 99568179 G T FILIP1L Missense_Mutation p.L781I 0.37 deleterious(0.05) benign(0.028) TCGA-AD-A5EJ-01 3 9979714 9979714 G A CRELD1 Silent p.P128P 0.11 TCGA-AD-A5EJ-01 4 100340189 100340189 C T ADH7 Silent p.P325P 0.35 TCGA-AD-A5EJ-01 4 100503217 100503217 G A MTTP Missense_Mutation p.D73N 0.30 tolerated(0.42) benign(0.029) TCGA-AD-A5EJ-01 4 103556039 103556039 T C MANBA Missense_Mutation p.Y774C 0.32 tolerated(0.14) benign(0.009) TCGA-AD-A5EJ-01 4 106159507 106159508 - T TET2 Intron 0.47 TCGA-AD-A5EJ-01 4 106621122 106621122 A - INTS12 Frame_Shift_Del p.L14* 0.27 TCGA-AD-A5EJ-01 4 109675790 109675791 - T ETNPPL Frame_Shift_Ins p.E163Rfs*17 0.23 TCGA-AD-A5EJ-01 4 109745158 109745158 C T COL25A1 Intron 0.37 TCGA-AD-A5EJ-01 4 114276474 114276474 G A ANK2 Missense_Mutation p.E2234K 0.28 probably_damaging(0.999) TCGA-AD-A5EJ-01 4 115997655 115997655 A T NDST4 Missense_Mutation p.F180I 0.20 deleterious(0) benign(0.056) TCGA-AD-A5EJ-01 4 121738037 121738037 C T PRDM5 Silent p.S231S 0.31 TCGA-AD-A5EJ-01 4 122301539 122301539 C T QRFPR Silent p.A88A 0.27 TCGA-AD-A5EJ-01 4 1245879 1245880 - A CTBP1 5'Flank 0.42 TCGA-AD-A5EJ-01 4 126241016 126241016 C A FAT4 Silent p.A1150A 0.28 TCGA-AD-A5EJ-01 4 128716930 128716930 C T HSPA4L Missense_Mutation p.T58M 0.36 deleterious(0.02) probably_damaging(0.944) TCGA-AD-A5EJ-01 4 134071442 134071442 G A PCDH10 Silent p.S49S 0.29 TCGA-AD-A5EJ-01 4 134073583 134073583 G A PCDH10 Missense_Mutation p.C763Y 0.39 tolerated(0.09) benign(0.039) TCGA-AD-A5EJ-01 4 13485808 13485808 G - RAB28 5'UTR 0.29 TCGA-AD-A5EJ-01 4 141548602 141548602 A G TBC1D9 Silent p.C964C 0.09 TCGA-AD-A5EJ-01 4 144359537 144359537 A G GAB1 Missense_Mutation p.T327A 0.39 tolerated(0.29) benign(0.002) TCGA-AD-A5EJ-01 4 145567805 145567805 G A HHIP 5'UTR 0.15 TCGA-AD-A5EJ-01 4 146059724 146059724 A G OTUD4 Missense_Mutation p.Y670H 0.30 deleterious(0) probably_damaging(0.964) TCGA-AD-A5EJ-01 4 147442908 147442908 T - SLC10A7 5'UTR 0.14 TCGA-AD-A5EJ-01 4 148993259 148993259 C A ARHGAP10 3'UTR 0.32 TCGA-AD-A5EJ-01 4 153691757 153691757 C A TIGD4 Missense_Mutation p.D134Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 4 153691874 153691874 A G TIGD4 Missense_Mutation p.Y95H 0.31 deleterious(0) probably_damaging(0.99) TCGA-AD-A5EJ-01 4 15640162 15640162 A T FBXL5 Missense_Mutation p.F184L 0.13 tolerated(0.82) benign(0.004) TCGA-AD-A5EJ-01 4 15690894 15690894 A G FAM200B 3'Flank 0.33 TCGA-AD-A5EJ-01 4 164069510 164069510 C T NAF1 Missense_Mutation p.S206N 0.29 deleterious(0.02) possibly_damaging(0.573) TCGA-AD-A5EJ-01 4 169194503 169194503 T C DDX60 Missense_Mutation p.K834R 0.36 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 4 1732954 1732955 - GCCAGT TACC3 In_Frame_Ins p.V508_P509dup 0.17 TCGA-AD-A5EJ-01 4 17654594 17654594 G A FAM184B Missense_Mutation p.R684C 0.10 deleterious(0.04) benign(0.112) TCGA-AD-A5EJ-01 4 176923515 176923515 C T GPM6A 5'Flank 0.35 TCGA-AD-A5EJ-01 4 17709341 17709342 - T FAM184B Frame_Shift_Ins p.L321Tfs*29 0.32 TCGA-AD-A5EJ-01 4 17805832 17805832 T A DCAF16 5'UTR 0.10 TCGA-AD-A5EJ-01 4 17816592 17816592 A G NCAPG Missense_Mutation p.K221E 0.40 deleterious(0) benign(0.129) TCGA-AD-A5EJ-01 4 17838781 17838781 G T NCAPG Splice_Site p.X704_splice 0.20 TCGA-AD-A5EJ-01 4 1824724 1824724 C A LETM1 Silent p.S489S 0.33 TCGA-AD-A5EJ-01 4 183603129 183603129 C T TENM3 Missense_Mutation p.T666M 0.36 tolerated(0.09) probably_damaging(0.93) TCGA-AD-A5EJ-01 4 183714672 183714672 G T TENM3 Missense_Mutation p.A2283S 0.32 deleterious(0.02) possibly_damaging(0.739) TCGA-AD-A5EJ-01 4 184622940 184622942 ATT - TRAPPC11 In_Frame_Del p.Y982del 0.20 TCGA-AD-A5EJ-01 4 185340623 185340623 C A IRF2 Nonsense_Mutation p.G63* 0.37 TCGA-AD-A5EJ-01 4 186112044 186112045 - T KIAA1430 Frame_Shift_Ins p.L103Ifs*3 0.15 TCGA-AD-A5EJ-01 4 186392126 186392126 C - CCDC110 Frame_Shift_Del p.V30* 0.24 TCGA-AD-A5EJ-01 4 186423408 186423408 C T PDLIM3 3'UTR 0.48 TCGA-AD-A5EJ-01 4 187630604 187630605 - T FAT1 Frame_Shift_Ins p.N126Kfs*3 0.13 TCGA-AD-A5EJ-01 4 21950325 21950325 C T KCNIP4 5'UTR 0.23 TCGA-AD-A5EJ-01 4 2339177 2339177 C T ZFYVE28 Missense_Mutation p.V190M 0.36 tolerated(0.17) benign(0.298) TCGA-AD-A5EJ-01 4 24534564 24534564 G A DHX15 Missense_Mutation p.R675C 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-AD-A5EJ-01 4 2948228 2948228 C T NOP14 Missense_Mutation p.A516T 0.08 tolerated(0.39) benign(0.426) TCGA-AD-A5EJ-01 4 30724026 30724026 C A PCDH7 Missense_Mutation p.L328M 0.06 deleterious(0.03) probably_damaging(0.992) TCGA-AD-A5EJ-01 4 367382 367382 A - ZNF141 Frame_Shift_Del p.I388Ffs*51 0.12 TCGA-AD-A5EJ-01 4 38037290 38037290 G C TBC1D1 Missense_Mutation p.E462Q 0.33 tolerated(0.27) benign(0.354) TCGA-AD-A5EJ-01 4 44683195 44683195 T - GUF1 Frame_Shift_Del p.L162Yfs*15 0.09 TCGA-AD-A5EJ-01 4 52938115 52938115 G A SPATA18 Missense_Mutation p.R184H 0.39 tolerated(0.09) probably_damaging(0.984) TCGA-AD-A5EJ-01 4 54344832 54344832 G A LNX1 Silent p.T521T 0.14 TCGA-AD-A5EJ-01 4 5785362 5785362 C - EVC Frame_Shift_Del p.P551Rfs*7 0.24 TCGA-AD-A5EJ-01 4 6107636 6107636 C T JAKMIP1 Missense_Mutation p.R63Q 0.49 tolerated(0.12) benign(0.219) TCGA-AD-A5EJ-01 4 6302888 6302888 C T WFS1 Missense_Mutation p.R456C 0.44 deleterious(0.02) probably_damaging(0.995) TCGA-AD-A5EJ-01 4 68488865 68488865 T C UBA6 Missense_Mutation p.I972M 0.39 tolerated(0.2) possibly_damaging(0.475) TCGA-AD-A5EJ-01 4 69107436 69107436 A G TMPRSS11B Missense_Mutation p.I32T 0.35 deleterious(0.01) possibly_damaging(0.541) TCGA-AD-A5EJ-01 4 69362400 69362400 G A TMPRSS11E Missense_Mutation p.D384N 0.34 tolerated(0.59) benign(0.055) TCGA-AD-A5EJ-01 4 70079959 70079959 G A UGT2B11 Missense_Mutation p.A161V 0.37 deleterious(0.02) possibly_damaging(0.898) TCGA-AD-A5EJ-01 4 70460365 70460365 G T UGT2A1 Silent p.I544I 0.09 TCGA-AD-A5EJ-01 4 71115009 71115009 A - CSN3 Frame_Shift_Del p.I129* 0.12 TCGA-AD-A5EJ-01 4 71503554 71503555 - G ENAM Frame_Shift_Ins 0.27 TCGA-AD-A5EJ-01 4 74351595 74351595 A - AFM Frame_Shift_Del p.I98Yfs*62 0.14 TCGA-AD-A5EJ-01 4 75250531 75250531 G A EREG 3'UTR 0.07 TCGA-AD-A5EJ-01 4 76489680 76489680 A - C4orf26 Frame_Shift_Del p.S159Afs*? 0.47 TCGA-AD-A5EJ-01 4 77652061 77652061 C A SHROOM3 Missense_Mutation p.P187H 0.30 deleterious(0.01) possibly_damaging(0.533) TCGA-AD-A5EJ-01 4 79428719 79428719 A G FRAS1 Missense_Mutation p.D3154G 0.32 benign(0.244) TCGA-AD-A5EJ-01 4 79754809 79754809 G T BMP2K Missense_Mutation p.W124L 0.23 deleterious(0) possibly_damaging(0.853) TCGA-AD-A5EJ-01 4 79832865 79832865 G A BMP2K Missense_Mutation p.R1055K 0.30 tolerated_low_confidence(0.24) unknown(0) TCGA-AD-A5EJ-01 4 83839910 83839910 A - THAP9 Frame_Shift_Del p.N850Mfs*7 0.29 TCGA-AD-A5EJ-01 4 860760 860760 T C GAK Silent p.G952G 0.14 TCGA-AD-A5EJ-01 4 88379185 88379185 C T NUDT9 3'UTR 0.30 TCGA-AD-A5EJ-01 4 89039365 89039365 C T ABCG2 Missense_Mutation p.R246Q 0.30 tolerated(0.19) benign(0.406) TCGA-AD-A5EJ-01 4 90034221 90034221 C T TIGD2 Silent p.S32S 0.20 TCGA-AD-A5EJ-01 4 91549290 91549290 C T CCSER1 Silent p.N613N 0.33 TCGA-AD-A5EJ-01 4 95506761 95506761 T C PDLIM5 Silent p.H149H 0.42 TCGA-AD-A5EJ-01 4 9785421 9785421 G T DRD5 3'UTR 0.06 TCGA-AD-A5EJ-01 5 102886494 102886494 C A NUDT12 3'UTR 0.33 TCGA-AD-A5EJ-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.25 TCGA-AD-A5EJ-01 5 1075487 1075487 C T SLC12A7 Missense_Mutation p.G656R 0.38 deleterious(0.01) possibly_damaging(0.751) TCGA-AD-A5EJ-01 5 112884685 112884685 G A YTHDC2 Silent p.Q552Q 0.38 TCGA-AD-A5EJ-01 5 115335468 115335468 T - AQPEP Frame_Shift_Del p.S464Lfs*15 0.18 TCGA-AD-A5EJ-01 5 118176732 118176732 A C DTWD2 Silent p.G259G 0.07 TCGA-AD-A5EJ-01 5 118502437 118502438 - T DMXL1 Frame_Shift_Ins p.L1702Sfs*11 0.24 TCGA-AD-A5EJ-01 5 121739547 121739547 C T SNCAIP Silent p.N39N 0.36 TCGA-AD-A5EJ-01 5 125939711 125939712 - A PHAX Frame_Shift_Ins p.M185Nfs*32 0.36 TCGA-AD-A5EJ-01 5 129070681 129070681 G A ADAMTS19 Silent p.K1117K 0.32 TCGA-AD-A5EJ-01 5 132159202 132159202 C T SHROOM1 Missense_Mutation p.A656T 0.28 tolerated(0.11) benign(0.011) TCGA-AD-A5EJ-01 5 132159425 132159425 G A SHROOM1 Missense_Mutation p.P615S 0.19 tolerated(0.14) benign(0.432) TCGA-AD-A5EJ-01 5 134705744 134705744 A G H2AFY Silent p.N87N 0.17 TCGA-AD-A5EJ-01 5 134871329 134871329 T C NEUROG1 Missense_Mutation p.S18G 0.15 tolerated(0.21) benign(0) TCGA-AD-A5EJ-01 5 135692712 135692712 C T TRPC7 Missense_Mutation p.V122M 0.29 deleterious(0) probably_damaging(0.997) TCGA-AD-A5EJ-01 5 137625245 137625245 G A CDC25C Missense_Mutation p.A291V 0.29 tolerated(1) benign(0.003) TCGA-AD-A5EJ-01 5 138287023 138287023 A G SIL1 Missense_Mutation p.V289A 0.20 tolerated(0.86) benign(0.003) TCGA-AD-A5EJ-01 5 138724217 138724217 G C MZB1 Missense_Mutation p.R79G 0.08 tolerated(0.06) benign(0.232) TCGA-AD-A5EJ-01 5 139251395 139251395 G A NRG2 Silent p.H341H 0.30 TCGA-AD-A5EJ-01 5 140021308 140021308 C A TMCO6 Missense_Mutation p.A86D 0.06 tolerated(0.24) probably_damaging(0.999) TCGA-AD-A5EJ-01 5 140166068 140166068 C T PCDHA1 Missense_Mutation p.R65W 0.23 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-AD-A5EJ-01 5 140222954 140222954 C T PCDHA8 Missense_Mutation p.S683L 0.34 tolerated_low_confidence(0.85) benign(0.002) TCGA-AD-A5EJ-01 5 140237532 140237532 G A PCDHA10 Silent p.T633T 0.37 TCGA-AD-A5EJ-01 5 140249016 140249016 G A PCDHA11 Missense_Mutation p.V110M 0.25 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-AD-A5EJ-01 5 140474995 140474995 G A PCDHB2 Silent p.Q207Q 0.38 TCGA-AD-A5EJ-01 5 140530740 140530740 T C PCDHB6 Missense_Mutation p.L301P 0.27 deleterious(0) probably_damaging(0.961) TCGA-AD-A5EJ-01 5 140537176 140537176 G A PCDHB17 Missense_Mutation p.A534T 0.35 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-AD-A5EJ-01 5 140616346 140616346 C T PCDHB18 RNA 0.37 TCGA-AD-A5EJ-01 5 140700242 140700242 G T TAF7 5'UTR 0.30 TCGA-AD-A5EJ-01 5 140731491 140731491 C T PCDHGB1 Missense_Mutation p.A555V 0.34 tolerated(0.07) benign(0.285) TCGA-AD-A5EJ-01 5 140735511 140735511 C T PCDHGA4 Silent p.H248H 0.36 TCGA-AD-A5EJ-01 5 140755197 140755197 C T PCDHGA6 Missense_Mutation p.A516V 0.21 deleterious_low_confidence(0) possibly_damaging(0.687) TCGA-AD-A5EJ-01 5 140793403 140793403 G - PCDHGA10 Frame_Shift_Del p.G222Vfs*13 0.30 TCGA-AD-A5EJ-01 5 140811312 140811312 C T PCDHGA12 Missense_Mutation p.A329V 0.33 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-AD-A5EJ-01 5 141026156 141026156 C - FCHSD1 Intron 0.28 TCGA-AD-A5EJ-01 5 141035294 141035294 C T ARAP3 Missense_Mutation p.R1335H 0.11 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 5 14369574 14369574 C T TRIO Missense_Mutation p.T1053M 0.31 possibly_damaging(0.854) TCGA-AD-A5EJ-01 5 147024552 147024552 C T JAKMIP2 Missense_Mutation p.R315H 0.33 deleterious(0) probably_damaging(0.989) TCGA-AD-A5EJ-01 5 148207662 148207662 C G ADRB2 3'UTR 0.24 TCGA-AD-A5EJ-01 5 149011829 149011829 C T ARHGEF37 3'UTR 0.33 TCGA-AD-A5EJ-01 5 149441366 149441366 C T CSF1R Missense_Mutation p.G558D 0.26 deleterious(0.03) benign(0.145) TCGA-AD-A5EJ-01 5 150097846 150097846 T C DCTN4 Missense_Mutation p.T362A 0.21 deleterious(0.03) benign(0.294) TCGA-AD-A5EJ-01 5 150411928 150411928 C T TNIP1 Missense_Mutation p.R599H 0.36 tolerated(0.23) probably_damaging(0.996) TCGA-AD-A5EJ-01 5 150527461 150527461 A G ANXA6 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0.01) benign(0.169) TCGA-AD-A5EJ-01 5 150632800 150632800 C A GM2A Missense_Mutation p.P8H 0.16 deleterious(0.02) unknown(0) TCGA-AD-A5EJ-01 5 15500794 15500794 G A FBXL7 Silent p.A3A 0.33 TCGA-AD-A5EJ-01 5 156381448 156381448 G A TIMD4 Silent p.N126N 0.34 TCGA-AD-A5EJ-01 5 156746853 156746853 C T CYFIP2 Silent p.Y454Y 0.10 TCGA-AD-A5EJ-01 5 156908843 156908843 C T ADAM19 Missense_Mutation p.A887T 0.34 tolerated(0.37) benign(0.004) TCGA-AD-A5EJ-01 5 158139211 158139211 G A EBF1 Silent p.G500G 0.29 TCGA-AD-A5EJ-01 5 158608996 158608997 AG - RNF145 Frame_Shift_Del p.S149Yfs*54 0.24 TCGA-AD-A5EJ-01 5 1593359 1593359 C T CTD-2012J19.3 5'Flank 0.14 TCGA-AD-A5EJ-01 5 16091025 16091025 A G MARCH11 Missense_Mutation p.Y287H 0.31 deleterious(0) probably_damaging(0.993) TCGA-AD-A5EJ-01 5 162917426 162917426 A - HMMR Frame_Shift_Del p.K667Nfs*11 0.35 TCGA-AD-A5EJ-01 5 16672827 16672827 G A MYO10 Silent p.V1760V 0.27 TCGA-AD-A5EJ-01 5 167868721 167868721 G A WWC1 Missense_Mutation p.R772Q 0.28 tolerated(0.29) benign(0.001) TCGA-AD-A5EJ-01 5 169015404 169015404 A - SPDL1 5'UTR 0.37 TCGA-AD-A5EJ-01 5 173316678 173316701 AGGCGTGAGACATCAGGTTGTCAT GGCGTGAGACATCAGGTTGTCA CPEB4 5'UTR 0.16 TCGA-AD-A5EJ-01 5 173316701 173316701 T - CPEB4 5'UTR 0.18 TCGA-AD-A5EJ-01 5 176022599 176022599 C T CDHR2 Missense_Mutation p.R1287W 0.35 deleterious(0) possibly_damaging(0.53) TCGA-AD-A5EJ-01 5 176722543 176722543 A - NSD1 3'UTR 0.27 TCGA-AD-A5EJ-01 5 176935486 176935486 G A DOK3 Missense_Mutation p.R98W 0.20 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 5 176939790 176939790 C T DDX41 Missense_Mutation p.G464R 0.26 deleterious(0) probably_damaging(0.957) TCGA-AD-A5EJ-01 5 177576686 177576686 G A NHP2 3'UTR 0.39 TCGA-AD-A5EJ-01 5 178360013 178360013 A - ZFP2 3'UTR 0.24 TCGA-AD-A5EJ-01 5 179297261 179297261 C A TBC1D9B Missense_Mutation p.G907W 0.34 tolerated(0.22) probably_damaging(0.986) TCGA-AD-A5EJ-01 5 179318551 179318551 C T TBC1D9B Missense_Mutation p.R291Q 0.38 deleterious(0.01) benign(0.265) TCGA-AD-A5EJ-01 5 180377036 180377036 C T BTNL8 Missense_Mutation p.A332V 0.03 tolerated(0.08) probably_damaging(1) TCGA-AD-A5EJ-01 5 180650959 180650959 C - TRIM41 5'UTR 0.53 TCGA-AD-A5EJ-01 5 21802330 21802330 G A CDH12 Missense_Mutation p.T401I 0.15 deleterious(0.03) possibly_damaging(0.535) TCGA-AD-A5EJ-01 5 23527530 23527530 G A PRDM9 Missense_Mutation p.C778Y 0.10 deleterious(0.01) unknown(0) TCGA-AD-A5EJ-01 5 23527614 23527614 G A PRDM9 Missense_Mutation p.C806Y 0.06 deleterious(0.03) probably_damaging(1) TCGA-AD-A5EJ-01 5 24487771 24487771 G A CDH10 3'UTR 0.36 TCGA-AD-A5EJ-01 5 24537693 24537693 T - CDH10 Frame_Shift_Del p.T108Qfs*30 0.31 TCGA-AD-A5EJ-01 5 26881625 26881625 C T CDH9 Missense_Mutation p.G664S 0.24 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 5 31526833 31526833 G T DROSHA Silent p.P69P 0.29 TCGA-AD-A5EJ-01 5 31541482 31541482 C T C5orf22 Missense_Mutation p.T322M 0.40 deleterious(0.03) benign(0.217) TCGA-AD-A5EJ-01 5 33938039 33938039 G T RXFP3 Missense_Mutation p.K398N 0.16 tolerated(0.11) benign(0.013) TCGA-AD-A5EJ-01 5 34033429 34033429 C T C1QTNF3 Missense_Mutation p.G184R 0.37 deleterious(0) probably_damaging(0.997) TCGA-AD-A5EJ-01 5 35938671 35938671 G A CAPSL Intron 0.25 TCGA-AD-A5EJ-01 5 36197658 36197658 C T NADK2 Missense_Mutation p.R392H 0.44 deleterious(0.02) benign(0.081) TCGA-AD-A5EJ-01 5 37006464 37006464 C T NIPBL Silent p.N1287N 0.27 TCGA-AD-A5EJ-01 5 37180261 37180262 - T C5orf42 Frame_Shift_Ins p.N1865Kfs*3 0.22 TCGA-AD-A5EJ-01 5 40981579 40981579 G T C7 Missense_Mutation p.E812D 0.19 tolerated(0.31) benign(0.031) TCGA-AD-A5EJ-01 5 41159223 41159223 C T C6 Missense_Mutation p.R606Q 0.27 tolerated(0.41) benign(0.005) TCGA-AD-A5EJ-01 5 446304 446304 C T EXOC3 5'UTR 0.20 TCGA-AD-A5EJ-01 5 5182285 5182285 G A ADAMTS16 Silent p.E210E 0.21 TCGA-AD-A5EJ-01 5 52097555 52097555 T G PELO Missense_Mutation p.S347A 0.17 deleterious(0) probably_damaging(0.994) TCGA-AD-A5EJ-01 5 54572184 54572184 T - DHX29 Frame_Shift_Del p.D780Tfs*15 0.26 TCGA-AD-A5EJ-01 5 54618259 54618259 C A SKIV2L2 Missense_Mutation p.P80H 0.36 tolerated(0.59) benign(0.002) TCGA-AD-A5EJ-01 5 63256816 63256816 G T HTR1A Missense_Mutation p.A244E 0.28 tolerated(1) benign(0.128) TCGA-AD-A5EJ-01 5 63257005 63257005 C T HTR1A Missense_Mutation p.R181H 0.31 tolerated(0.11) probably_damaging(0.992) TCGA-AD-A5EJ-01 5 64942985 64942985 A G TRAPPC13 Missense_Mutation p.E135G 0.36 deleterious(0) probably_damaging(0.953) TCGA-AD-A5EJ-01 5 6668385 6668385 C T SRD5A1 3'UTR 0.10 TCGA-AD-A5EJ-01 5 67522781 67522781 G A PIK3R1 Missense_Mutation p.R93Q 0.42 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-AD-A5EJ-01 5 68665576 68665576 G A TAF9 5'UTR 0.32 TCGA-AD-A5EJ-01 5 70766233 70766233 T - BDP1 Frame_Shift_Del p.L313* 0.30 TCGA-AD-A5EJ-01 5 73930719 73930719 C T ENC1 Missense_Mutation p.C531Y 0.20 deleterious(0) probably_damaging(0.99) TCGA-AD-A5EJ-01 5 75505676 75505676 G A SV2C Missense_Mutation p.A293T 0.28 deleterious(0) benign(0.32) TCGA-AD-A5EJ-01 5 76028231 76028231 A - F2R Frame_Shift_Del p.N62Mfs*5 0.15 TCGA-AD-A5EJ-01 5 76646969 76646969 G A PDE8B Missense_Mutation p.G366D 0.38 deleterious(0.01) probably_damaging(1) TCGA-AD-A5EJ-01 5 76934403 76934403 C - OTP 5'UTR 0.25 TCGA-AD-A5EJ-01 5 79617568 79617569 - T SPZ1 3'UTR 0.22 TCGA-AD-A5EJ-01 5 79854592 79854592 G - ANKRD34B Frame_Shift_Del p.P416Qfs*4 0.16 TCGA-AD-A5EJ-01 5 850652 850652 C T ZDHHC11 Silent p.L22L 0.34 TCGA-AD-A5EJ-01 5 88057096 88057096 G A MEF2C Missense_Mutation p.A103V 0.51 deleterious(0) unknown(0) TCGA-AD-A5EJ-01 5 89924496 89924496 C T GPR98 Silent p.S452S 0.34 TCGA-AD-A5EJ-01 5 93800689 93800689 G A KIAA0825 Silent p.L650L 0.17 TCGA-AD-A5EJ-01 5 96231020 96231020 T C ERAP2 Missense_Mutation p.M399T 0.27 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 6 100062247 100062247 G A PRDM13 Missense_Mutation p.G579D 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-AD-A5EJ-01 6 100896034 100896034 C T SIM1 Missense_Mutation p.A280T 0.29 tolerated(0.13) possibly_damaging(0.582) TCGA-AD-A5EJ-01 6 10529982 10529982 G T GCNT2 Missense_Mutation p.D280Y 0.14 deleterious(0) probably_damaging(0.982) TCGA-AD-A5EJ-01 6 105606534 105606534 G A POPDC3 Silent p.R229R 0.31 TCGA-AD-A5EJ-01 6 106968796 106968796 A - AIM1 Frame_Shift_Del p.S832Vfs*21 0.25 TCGA-AD-A5EJ-01 6 106989458 106989458 C T AIM1 Intron 0.38 TCGA-AD-A5EJ-01 6 10704763 10704763 C A PAK1IP1 Missense_Mutation p.P174T 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-AD-A5EJ-01 6 10705022 10705022 T - PAK1IP1 Frame_Shift_Del p.F230Lfs*6 0.15 TCGA-AD-A5EJ-01 6 10796496 10796496 G A MAK Missense_Mutation p.S293L 0.21 tolerated(0.15) benign(0.004) TCGA-AD-A5EJ-01 6 109764273 109764273 G A SMPD2 Missense_Mutation p.V240M 0.31 tolerated(0.1) possibly_damaging(0.634) TCGA-AD-A5EJ-01 6 112388199 112388199 C A WISP3 Intron 0.29 TCGA-AD-A5EJ-01 6 112671473 112671473 C T RFPL4B Missense_Mutation p.A188V 0.33 tolerated(0.22) benign(0.15) TCGA-AD-A5EJ-01 6 117244285 117244285 G A RFX6 Missense_Mutation p.G485R 0.34 tolerated(0.05) probably_damaging(0.993) TCGA-AD-A5EJ-01 6 117869517 117869517 C T DCBLD1 Intron 0.32 TCGA-AD-A5EJ-01 6 119341203 119341204 - A FAM184A Frame_Shift_Ins p.L424Ffs*10 0.28 TCGA-AD-A5EJ-01 6 12121957 12121957 C T HIVEP1 Silent p.H643H 0.24 TCGA-AD-A5EJ-01 6 123376953 123376954 - T CLVS2 Frame_Shift_Ins p.L228Ffs*4 0.09 TCGA-AD-A5EJ-01 6 123892171 123892171 C T TRDN Silent p.T43T 0.05 TCGA-AD-A5EJ-01 6 127768831 127768831 A G KIAA0408 Silent p.H211H 0.19 TCGA-AD-A5EJ-01 6 128291315 128291315 C T PTPRK 3'UTR 0.22 TCGA-AD-A5EJ-01 6 130535565 130535565 T - SAMD3 Frame_Shift_Del p.K62Nfs*9 0.15 TCGA-AD-A5EJ-01 6 131199299 131199299 C T EPB41L2 Missense_Mutation p.R663H 0.37 deleterious(0.02) probably_damaging(0.994) TCGA-AD-A5EJ-01 6 132031982 132031982 A - CTAGE9 Frame_Shift_Del p.L59Cfs*27 0.25 TCGA-AD-A5EJ-01 6 132938650 132938651 - T TAAR2 Frame_Shift_Ins p.I232Nfs*14 0.16 TCGA-AD-A5EJ-01 6 13365380 13365380 C T GFOD1 Silent p.G256G 0.44 TCGA-AD-A5EJ-01 6 135358427 135358427 G T HBS1L Intron 0.38 TCGA-AD-A5EJ-01 6 138576848 138576848 G A KIAA1244 Missense_Mutation p.R349Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 6 139487597 139487597 C T HECA Missense_Mutation p.R150C 0.37 deleterious(0) probably_damaging(0.989) TCGA-AD-A5EJ-01 6 144081704 144081704 T - PHACTR2 Frame_Shift_Del p.N207Kfs*80 0.10 TCGA-AD-A5EJ-01 6 144869807 144869807 A G UTRN Silent p.V2209V 0.24 TCGA-AD-A5EJ-01 6 146875716 146875716 C T RAB32 Missense_Mutation p.A218V 0.22 tolerated(0.1) benign(0.006) TCGA-AD-A5EJ-01 6 147635041 147635041 C T STXBP5 Silent p.P389P 0.35 TCGA-AD-A5EJ-01 6 148795284 148795284 A C SASH1 Missense_Mutation p.S185R 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 6 150291167 150291167 C - ULBP1 Frame_Shift_Del p.P215Qfs*27 0.25 TCGA-AD-A5EJ-01 6 150322671 150322671 G T RAET1K RNA 0.38 TCGA-AD-A5EJ-01 6 152454510 152454510 T - SYNE1 Frame_Shift_Del p.V8635Sfs*12 0.12 TCGA-AD-A5EJ-01 6 152461127 152461127 G A SYNE1 Silent p.S8472S 0.30 TCGA-AD-A5EJ-01 6 152644801 152644801 C T SYNE1 Silent p.S5243S 0.26 TCGA-AD-A5EJ-01 6 152730699 152730699 A - SYNE1 Frame_Shift_Del p.S2126Pfs*10 0.24 TCGA-AD-A5EJ-01 6 154567768 154567768 A G IPCEF1 Missense_Mutation p.V68A 0.30 tolerated(0.16) benign(0.356) TCGA-AD-A5EJ-01 6 155123208 155123208 C T SCAF8 Missense_Mutation p.T237M 0.41 deleterious(0.02) unknown(0) TCGA-AD-A5EJ-01 6 158349730 158349730 G A SNX9 Silent p.T428T 0.44 TCGA-AD-A5EJ-01 6 158438708 158438708 A G SYNJ2 Intron 0.30 TCGA-AD-A5EJ-01 6 158483176 158483176 G - SYNJ2 Frame_Shift_Del p.E371Rfs*14 0.30 TCGA-AD-A5EJ-01 6 159636016 159636016 G A FNDC1 Missense_Mutation p.R167Q 0.34 tolerated(0.13) unknown(0) TCGA-AD-A5EJ-01 6 159660689 159660689 A - FNDC1 Frame_Shift_Del p.T1443Pfs*84 0.24 TCGA-AD-A5EJ-01 6 160113351 160113351 A - SOD2 Intron 0.42 TCGA-AD-A5EJ-01 6 160169553 160169553 G T WTAP Intron 0.19 TCGA-AD-A5EJ-01 6 160481708 160481708 C T IGF2R Missense_Mutation p.A1074V 0.32 deleterious(0) possibly_damaging(0.841) TCGA-AD-A5EJ-01 6 160670399 160670399 G A SLC22A2 Missense_Mutation p.R231W 0.30 deleterious(0.02) benign(0.289) TCGA-AD-A5EJ-01 6 161771122 161771122 C T PARK2 3'UTR 0.34 TCGA-AD-A5EJ-01 6 167709743 167709743 A G UNC93A Missense_Mutation p.S165G 0.34 tolerated(0.35) benign(0.014) TCGA-AD-A5EJ-01 6 168323562 168323562 C T MLLT4 Missense_Mutation p.R972C 0.34 deleterious(0.02) possibly_damaging(0.88) TCGA-AD-A5EJ-01 6 168352328 168352328 C T MLLT4 Missense_Mutation p.R1425C 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 6 168708852 168708852 G - DACT2 Frame_Shift_Del p.Q529Sfs*228 0.37 TCGA-AD-A5EJ-01 6 170104005 170104006 - A PHF10 3'UTR 0.27 TCGA-AD-A5EJ-01 6 170886633 170886633 G A PDCD2 3'UTR 0.33 TCGA-AD-A5EJ-01 6 170892725 170892725 C T PDCD2 Missense_Mutation p.A132T 0.43 tolerated(0.2) benign(0.021) TCGA-AD-A5EJ-01 6 17765157 17765157 A G KIF13A Silent p.N1534N 0.42 TCGA-AD-A5EJ-01 6 17817284 17817284 G A KIF13A Missense_Mutation p.A656V 0.32 tolerated(0.22) benign(0.426) TCGA-AD-A5EJ-01 6 18130929 18130929 A - TPMT Frame_Shift_Del p.F236Lfs*12 0.25 TCGA-AD-A5EJ-01 6 21596841 21596841 T - SOX4 3'UTR 0.35 TCGA-AD-A5EJ-01 6 21597490 21597490 A - SOX4 3'UTR 0.46 TCGA-AD-A5EJ-01 6 22570635 22570635 C T HDGFL1 3'UTR 0.34 TCGA-AD-A5EJ-01 6 24429295 24429295 C T GPLD1 Missense_Mutation p.G830R 0.36 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 6 24523088 24523088 G A ALDH5A1 Missense_Mutation p.V383I 0.39 tolerated(0.14) benign(0.007) TCGA-AD-A5EJ-01 6 24580109 24580109 G A KIAA0319 Missense_Mutation p.T450M 0.24 deleterious(0) probably_damaging(0.977) TCGA-AD-A5EJ-01 6 24830866 24830866 G A FAM65B Silent p.L814L 0.34 TCGA-AD-A5EJ-01 6 26428124 26428124 A G BTN2A3P RNA 0.40 TCGA-AD-A5EJ-01 6 2685594 2685594 C T MYLK4 Missense_Mutation p.A161T 0.10 tolerated(0.19) benign(0.008) TCGA-AD-A5EJ-01 6 28227314 28227314 G A NKAPL Nonsense_Mutation p.W55* 0.26 TCGA-AD-A5EJ-01 6 29275018 29275018 A C OR14J1 Missense_Mutation p.K184N 0.06 deleterious(0.02) benign(0.424) TCGA-AD-A5EJ-01 6 30658698 30658698 G T NRM Silent p.A18A 0.32 TCGA-AD-A5EJ-01 6 30671821 30671821 C T MDC1 Silent p.E1713E 0.39 TCGA-AD-A5EJ-01 6 30856710 30856710 G A DDR1 Missense_Mutation p.M37I 0.31 deleterious(0) probably_damaging(0.968) TCGA-AD-A5EJ-01 6 30867046 30867046 G A DDR1 Silent p.L911L 0.43 TCGA-AD-A5EJ-01 6 30919763 30919763 G A DPCR1 Silent p.T1174T 0.10 TCGA-AD-A5EJ-01 6 30951763 30951763 C A MUC21 Missense_Mutation p.L10I 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AD-A5EJ-01 6 31595591 31595591 A G PRRC2A Missense_Mutation p.E447G 0.12 unknown(0) TCGA-AD-A5EJ-01 6 31611902 31611902 G T BAG6 Missense_Mutation p.A512D 0.25 tolerated(0.2) probably_damaging(0.994) TCGA-AD-A5EJ-01 6 31637105 31637105 A G CSNK2B-LY6G5B-1181 Missense_Mutation p.D126G 0.09 deleterious(0) probably_damaging(0.962) TCGA-AD-A5EJ-01 6 31644633 31644633 G A LY6G5C 3'UTR 0.21 TCGA-AD-A5EJ-01 6 31749530 31749530 C T VARS Missense_Mutation p.V786I 0.45 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 6 31779702 31779702 G T HSPA1L Silent p.T16T 0.16 TCGA-AD-A5EJ-01 6 31842608 31842610 AGG - SLC44A4 In_Frame_Del p.S119del 0.36 TCGA-AD-A5EJ-01 6 32121394 32121394 G A PPT2 5'UTR 0.12 TCGA-AD-A5EJ-01 6 32134975 32134975 G A EGFL8 Missense_Mutation p.R181H 0.43 tolerated(0.15) benign(0.039) TCGA-AD-A5EJ-01 6 32150617 32150617 C - AGER Splice_Site p.X231_splice 0.17 TCGA-AD-A5EJ-01 6 33245916 33245916 G - B3GALT4 Frame_Shift_Del p.G242Afs*48 0.23 TCGA-AD-A5EJ-01 6 33419549 33419549 C - SYNGAP1 Frame_Shift_Del p.L1302Wfs*8 0.17 TCGA-AD-A5EJ-01 6 33423414 33423414 A G ZBTB9 Silent p.P179P 0.46 TCGA-AD-A5EJ-01 6 33740289 33740289 G A LEMD2 3'UTR 0.31 TCGA-AD-A5EJ-01 6 350824 350824 G T DUSP22 Missense_Mutation p.A171S 0.20 tolerated(0.3) benign(0.018) TCGA-AD-A5EJ-01 6 36189955 36189955 C - BRPF3 Frame_Shift_Del p.K1034Nfs*18 0.22 TCGA-AD-A5EJ-01 6 36922646 36922646 T C PI16 Missense_Mutation p.V37A 0.15 deleterious(0) probably_damaging(0.958) TCGA-AD-A5EJ-01 6 37418091 37418091 A C CMTR1 Missense_Mutation p.E170A 0.30 tolerated(0.12) benign(0.219) TCGA-AD-A5EJ-01 6 41129194 41129194 C T TREM2 Silent p.T66T 0.26 TCGA-AD-A5EJ-01 6 41162347 41162347 C A TREML2 Nonsense_Mutation p.G201* 0.36 TCGA-AD-A5EJ-01 6 43266148 43266148 C A SLC22A7 Missense_Mutation p.L18M 0.39 tolerated(0.16) possibly_damaging(0.873) TCGA-AD-A5EJ-01 6 43420768 43420768 G A DLK2 Silent p.G82G 0.38 TCGA-AD-A5EJ-01 6 43516059 43516059 C T XPO5 Missense_Mutation p.V667M 0.27 deleterious(0.02) benign(0.01) TCGA-AD-A5EJ-01 6 43589757 43589757 C T GTPBP2 Missense_Mutation p.E539K 0.14 tolerated(0.9) benign(0.11) TCGA-AD-A5EJ-01 6 44217235 44217235 G A HSP90AB1 Missense_Mutation p.G90D 0.35 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.20 TCGA-AD-A5EJ-01 6 45390355 45390355 C - RUNX2 Frame_Shift_Del p.S31Pfs*9 0.22 TCGA-AD-A5EJ-01 6 45514856 45514856 G - RUNX2 Frame_Shift_Del p.G462Efs*22 0.26 TCGA-AD-A5EJ-01 6 47847563 47847563 G T PTCHD4 Silent p.T339T 0.28 TCGA-AD-A5EJ-01 6 51882267 51882267 G T PKHD1 Silent p.L1847L 0.14 TCGA-AD-A5EJ-01 6 52129524 52129524 G T MCM3 Silent p.I808I 0.39 TCGA-AD-A5EJ-01 6 52334208 52334208 A - EFHC1 Frame_Shift_Del p.D408Tfs*7 0.24 TCGA-AD-A5EJ-01 6 54792330 54792330 G T FAM83B Missense_Mutation p.G212C 0.31 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 6 55638932 55638932 G A BMP5 Silent p.S314S 0.36 TCGA-AD-A5EJ-01 6 56323997 56323997 G A DST Missense_Mutation p.R5108C 0.31 probably_damaging(0.999) TCGA-AD-A5EJ-01 6 56374651 56374651 C A DST Missense_Mutation p.Q3644H 0.25 possibly_damaging(0.785) TCGA-AD-A5EJ-01 6 56484485 56484485 T C DST Intron 0.30 TCGA-AD-A5EJ-01 6 56883333 56883333 A G BEND6 Missense_Mutation p.Q276R 0.33 tolerated_low_confidence(0.12) possibly_damaging(0.775) TCGA-AD-A5EJ-01 6 6251042 6251042 A C F13A1 Splice_Site p.X230_splice 0.22 TCGA-AD-A5EJ-01 6 66005817 66005818 - T EYS Frame_Shift_Ins p.N654Kfs*5 0.23 TCGA-AD-A5EJ-01 6 70875837 70875837 G T COL19A1 Missense_Mutation p.S802I 0.25 deleterious(0.02) probably_damaging(0.95) TCGA-AD-A5EJ-01 6 72889515 72889515 G A RIMS1 Missense_Mutation p.A237T 0.43 tolerated(0.55) benign(0.033) TCGA-AD-A5EJ-01 6 7393536 7393536 G T RIOK1 Missense_Mutation p.Q92H 0.18 deleterious(0.04) probably_damaging(0.99) TCGA-AD-A5EJ-01 6 74176308 74176308 C T MTO1 Missense_Mutation p.R172C 0.20 tolerated(0.13) benign(0.028) TCGA-AD-A5EJ-01 6 76744470 76744470 G T IMPG1 Silent p.I112I 0.37 TCGA-AD-A5EJ-01 6 82949918 82949918 A - IBTK Frame_Shift_Del p.Y96Mfs*11 0.10 TCGA-AD-A5EJ-01 6 83076165 83076165 T C TPBG 3'UTR 0.38 TCGA-AD-A5EJ-01 6 83830503 83830503 T C DOPEY1 Silent p.P364P 0.50 TCGA-AD-A5EJ-01 6 84862599 84862600 - T KIAA1009 Frame_Shift_Ins p.R1099Efs*46 0.18 TCGA-AD-A5EJ-01 6 90398343 90398343 C A MDN1 Missense_Mutation p.E3736D 0.14 benign(0.304) TCGA-AD-A5EJ-01 6 90503607 90503607 G T MDN1 Silent p.S243S 0.28 TCGA-AD-A5EJ-01 6 90661373 90661373 C T BACH2 Missense_Mutation p.R151H 0.19 tolerated(0.07) possibly_damaging(0.474) TCGA-AD-A5EJ-01 6 96651869 96651869 T C FUT9 Missense_Mutation p.Y280H 0.05 tolerated(0.14) benign(0.035) TCGA-AD-A5EJ-01 6 96654644 96654644 T - FUT9 3'UTR 0.38 TCGA-AD-A5EJ-01 6 99286374 99286374 T - POU3F2 3'UTR 0.30 TCGA-AD-A5EJ-01 6 99856023 99856023 T - PNISR Frame_Shift_Del p.E267Kfs*59 0.19 TCGA-AD-A5EJ-01 7 100064758 100064758 G A TSC22D4 Missense_Mutation p.R338W 0.20 deleterious(0) probably_damaging(0.953) TCGA-AD-A5EJ-01 7 100283063 100283063 A G GIGYF1 Missense_Mutation p.S366P 0.20 tolerated(0.33) unknown(0) TCGA-AD-A5EJ-01 7 100285710 100285710 C T GIGYF1 Missense_Mutation p.G20D 0.28 deleterious(0.01) unknown(0) TCGA-AD-A5EJ-01 7 100334609 100334609 G C ZAN Missense_Mutation p.R144P 0.74 probably_damaging(0.963) TCGA-AD-A5EJ-01 7 103138297 103138297 C A RELN Missense_Mutation p.G2974C 0.27 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 7 107698368 107698368 T G LAMB4 Silent p.T1096T 0.09 TCGA-AD-A5EJ-01 7 117243754 117243755 CA - CFTR Frame_Shift_Del p.T943Sfs*31 0.22 TCGA-AD-A5EJ-01 7 117864739 117864739 G A ANKRD7 5'UTR 0.29 TCGA-AD-A5EJ-01 7 12414659 12414659 T C VWDE Missense_Mutation p.N407D 0.21 tolerated(0.11) benign(0.003) TCGA-AD-A5EJ-01 7 128356894 128356894 G A FAM71F1 Missense_Mutation p.V93I 0.37 tolerated(0.93) benign(0.001) TCGA-AD-A5EJ-01 7 128852004 128852004 C - SMO Frame_Shift_Del p.P694Lfs*82 0.50 TCGA-AD-A5EJ-01 7 136700834 136700834 C A CHRM2 Missense_Mutation p.L408I 0.33 deleterious(0.03) probably_damaging(0.926) TCGA-AD-A5EJ-01 7 138265390 138265390 A - TRIM24 Frame_Shift_Del p.K892Rfs*9 0.29 TCGA-AD-A5EJ-01 7 139268720 139268720 G A HIPK2 Silent p.Y936Y 0.18 TCGA-AD-A5EJ-01 7 140179156 140179156 C T MKRN1 5'UTR 0.29 TCGA-AD-A5EJ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.19 deleterious(0) probably_damaging(0.967) TCGA-AD-A5EJ-01 7 143530939 143530939 C T RP11-61L23.2 RNA 0.30 TCGA-AD-A5EJ-01 7 144061096 144061096 C - ARHGEF5 Frame_Shift_Del p.A447Qfs*7 0.07 TCGA-AD-A5EJ-01 7 148489817 148489817 G T CUL1 Splice_Site p.X603_splice 0.48 TCGA-AD-A5EJ-01 7 150695648 150695648 G A NOS3 Silent p.P232P 0.33 TCGA-AD-A5EJ-01 7 151921239 151921239 C A KMT2C Missense_Mutation p.A1062S 0.37 probably_damaging(0.972) TCGA-AD-A5EJ-01 7 151945128 151945128 C T KMT2C Silent p.L797L 0.02 TCGA-AD-A5EJ-01 7 155599468 155599468 G A SHH Intron 0.25 TCGA-AD-A5EJ-01 7 156752752 156752752 C T NOM1 Silent p.L506L 0.33 TCGA-AD-A5EJ-01 7 157449123 157449123 G A PTPRN2 Missense_Mutation p.R708C 0.37 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 7 20668329 20668329 C T ABCB5 Silent p.L43L 0.32 TCGA-AD-A5EJ-01 7 21813564 21813564 A - DNAH11 Frame_Shift_Del p.E3104Nfs*4 0.13 TCGA-AD-A5EJ-01 7 21956458 21956458 C T CDCA7L Missense_Mutation p.V27I 0.39 tolerated(0.35) benign(0.002) TCGA-AD-A5EJ-01 7 23236353 23236353 A - NUPL2 Frame_Shift_Del p.S194Vfs*2 0.14 TCGA-AD-A5EJ-01 7 27187143 27187143 C - HOXA6 Frame_Shift_Del p.A76Pfs*68 0.20 TCGA-AD-A5EJ-01 7 30951802 30951802 G A AQP1 Missense_Mutation p.R93H 0.30 deleterious(0) possibly_damaging(0.717) TCGA-AD-A5EJ-01 7 33014963 33014963 C T FKBP9 Silent p.D179D 0.38 TCGA-AD-A5EJ-01 7 4189037 4189037 G T SDK1 Nonsense_Mutation p.E1523* 0.15 TCGA-AD-A5EJ-01 7 42065887 42065887 G T GLI3 Missense_Mutation p.P385T 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-AD-A5EJ-01 7 43484125 43484126 - C HECW1 Frame_Shift_Ins p.S454Qfs*13 0.22 TCGA-AD-A5EJ-01 7 43485107 43485107 A G HECW1 Missense_Mutation p.H779R 0.06 tolerated_low_confidence(0.33) benign(0) TCGA-AD-A5EJ-01 7 44155494 44155494 T C POLD2 Splice_Site p.X340_splice 0.29 TCGA-AD-A5EJ-01 7 44184869 44184869 G A GCK Missense_Mutation p.R423W 0.38 tolerated(0.19) probably_damaging(0.914) TCGA-AD-A5EJ-01 7 47882665 47882666 - T PKD1L1 Frame_Shift_Ins p.K1781Efs*23 0.20 TCGA-AD-A5EJ-01 7 56128526 56128526 G A CCT6A Missense_Mutation p.V414M 0.25 deleterious(0) benign(0.356) TCGA-AD-A5EJ-01 7 6196678 6196678 A G USP42 Missense_Mutation p.Y1312C 0.26 tolerated_low_confidence(0.37) benign(0.004) TCGA-AD-A5EJ-01 7 624197 624197 C T PRKAR1B Silent p.T239T 0.26 TCGA-AD-A5EJ-01 7 63796647 63796647 C A ZNF736 Missense_Mutation p.T5K 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-AD-A5EJ-01 7 66703671 66703671 G A TYW1 3'UTR 0.32 TCGA-AD-A5EJ-01 7 72892381 72892381 A G BAZ1B Silent p.H470H 0.33 TCGA-AD-A5EJ-01 7 72987709 72987709 G - TBL2 Frame_Shift_Del p.P180Qfs*25 0.27 TCGA-AD-A5EJ-01 7 72992920 72992920 G T TBL2 5'UTR 0.32 TCGA-AD-A5EJ-01 7 73246063 73246063 G - CLDN4 Frame_Shift_Del p.L180Cfs*115 0.36 TCGA-AD-A5EJ-01 7 73249104 73249104 T C WBSCR27 Missense_Mutation p.E236G 0.21 tolerated_low_confidence(0.2) benign(0) TCGA-AD-A5EJ-01 7 73474486 73474486 T C ELN Silent p.A531A 0.24 TCGA-AD-A5EJ-01 7 74105346 74105346 T C GTF2I Silent p.I47I 0.11 TCGA-AD-A5EJ-01 7 75052242 75052242 C T POM121C Silent p.P431P 0.32 TCGA-AD-A5EJ-01 7 75053898 75053898 T C POM121C Missense_Mutation p.Q261R 0.27 deleterious(0.02) benign(0.077) TCGA-AD-A5EJ-01 7 75617095 75617095 C T POR 3'Flank 0.47 TCGA-AD-A5EJ-01 7 76112232 76112232 G A DTX2 Missense_Mutation p.V226I 0.10 tolerated(0.26) benign(0.002) TCGA-AD-A5EJ-01 7 78119106 78119106 A C MAGI2 Silent p.A339A 0.16 TCGA-AD-A5EJ-01 7 82580680 82580680 T C PCLO Missense_Mutation p.Q3075R 0.42 unknown(0) TCGA-AD-A5EJ-01 7 899876 899876 G A SUN1 Missense_Mutation p.D546N 0.27 tolerated(0.05) probably_damaging(0.978) TCGA-AD-A5EJ-01 7 91631460 91631460 A G AKAP9 Silent p.Q743Q 0.15 TCGA-AD-A5EJ-01 7 92136406 92136406 G A PEX1 Missense_Mutation p.H569Y 0.39 deleterious(0.02) benign(0.111) TCGA-AD-A5EJ-01 7 94740656 94740656 A - PPP1R9A Frame_Shift_Del p.K495Nfs*3 0.28 TCGA-AD-A5EJ-01 7 97821169 97821169 C T LMTK2 Silent p.T464T 0.15 TCGA-AD-A5EJ-01 7 98445715 98445715 C T TMEM130 Silent p.P424P 0.26 TCGA-AD-A5EJ-01 7 98446241 98446241 G T TMEM130 Missense_Mutation p.L362M 0.32 tolerated(0.1) benign(0.328) TCGA-AD-A5EJ-01 7 98957282 98957282 C T ARPC1A Missense_Mutation p.R302C 0.36 tolerated(0.06) benign(0.004) TCGA-AD-A5EJ-01 7 99017750 99017750 A G ATP5J2-PTCD1 Missense_Mutation p.L697P 0.24 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 7 99473974 99473974 C T OR2AE1 Missense_Mutation p.R228H 0.16 tolerated(0.42) benign(0.016) TCGA-AD-A5EJ-01 7 99950478 99950478 C T PILRB 5'UTR 0.12 TCGA-AD-A5EJ-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.39 TCGA-AD-A5EJ-01 8 10467016 10467016 A G RP1L1 Missense_Mutation p.L1531P 0.32 unknown(0) TCGA-AD-A5EJ-01 8 105509429 105509429 A - LRP12 Frame_Shift_Del p.C451Afs*37 0.22 TCGA-AD-A5EJ-01 8 11412929 11412929 C - BLK Frame_Shift_Del p.R238Gfs*27 0.20 TCGA-AD-A5EJ-01 8 116426253 116426253 A G TRPS1 Nonstop_Mutation p.*1295Qext*5 0.06 TCGA-AD-A5EJ-01 8 116616566 116616566 G A TRPS1 Nonsense_Mutation p.R544* 0.27 TCGA-AD-A5EJ-01 8 11705263 11705263 C - CTSB Frame_Shift_Del p.E201Rfs*74 0.29 TCGA-AD-A5EJ-01 8 121467729 121467729 T G MTBP Missense_Mutation p.L180W 0.27 deleterious(0.01) benign(0.001) TCGA-AD-A5EJ-01 8 123965336 123965336 C - ZHX2 Frame_Shift_Del p.Q531Rfs*19 0.23 TCGA-AD-A5EJ-01 8 123965770 123965770 C T ZHX2 Missense_Mutation p.R674C 0.31 deleterious(0) probably_damaging(0.994) TCGA-AD-A5EJ-01 8 124164227 124164227 C T TBC1D31 3'UTR 0.28 TCGA-AD-A5EJ-01 8 124335302 124335302 A G ATAD2 Missense_Mutation p.L1336P 0.53 deleterious(0) probably_damaging(0.966) TCGA-AD-A5EJ-01 8 125052193 125052193 A G FER1L6 Silent p.G845G 0.32 TCGA-AD-A5EJ-01 8 125080031 125080031 A - FER1L6 Frame_Shift_Del p.G1237Afs*10 0.24 TCGA-AD-A5EJ-01 8 128750684 128750684 C T MYC Missense_Mutation p.P74L 0.46 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 8 132051909 132051909 A G ADCY8 Missense_Mutation p.V224A 0.26 tolerated(0.37) possibly_damaging(0.522) TCGA-AD-A5EJ-01 8 133837586 133837586 A - PHF20L1 Frame_Shift_Del p.K574Rfs*28 0.26 TCGA-AD-A5EJ-01 8 13425581 13425581 T - C8orf48 3'UTR 0.29 TCGA-AD-A5EJ-01 8 134478210 134478210 C T ST3GAL1 Missense_Mutation p.V144I 0.34 probably_damaging(0.997) TCGA-AD-A5EJ-01 8 139160877 139160877 G A FAM135B Silent p.L1112L 0.37 TCGA-AD-A5EJ-01 8 141711058 141711058 G A PTK2 Missense_Mutation p.R811C 0.32 deleterious(0) possibly_damaging(0.888) TCGA-AD-A5EJ-01 8 143694590 143694590 A C ARC Missense_Mutation p.L348R 0.20 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 8 143784843 143784843 G A LY6K 3'UTR 0.37 TCGA-AD-A5EJ-01 8 144403514 144403514 C T TOP1MT Missense_Mutation p.A335T 0.42 deleterious(0) probably_damaging(0.993) TCGA-AD-A5EJ-01 8 144462897 144462897 C T RHPN1 Missense_Mutation p.A452V 0.37 deleterious(0) benign(0.124) TCGA-AD-A5EJ-01 8 144618527 144618527 G T ZC3H3 Missense_Mutation p.S487R 0.29 deleterious(0.01) possibly_damaging(0.718) TCGA-AD-A5EJ-01 8 144898901 144898901 A G PUF60 Missense_Mutation p.F490S 0.38 deleterious(0.02) benign(0.055) TCGA-AD-A5EJ-01 8 145158047 145158047 C A SHARPIN Missense_Mutation p.G95W 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-AD-A5EJ-01 8 145278043 145278043 C A MROH1 Silent p.A416A 0.23 TCGA-AD-A5EJ-01 8 145650100 145650100 C - VPS28 Splice_Site p.X134_splice 0.47 TCGA-AD-A5EJ-01 8 145830989 145830989 G A ARHGAP39 Missense_Mutation p.T4M 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.79) TCGA-AD-A5EJ-01 8 15977986 15977986 C T MSR1 Missense_Mutation p.C388Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 8 20112409 20112409 C A LZTS1 Missense_Mutation p.G95V 0.38 tolerated(0.11) probably_damaging(1) TCGA-AD-A5EJ-01 8 22165564 22165564 G A PIWIL2 Missense_Mutation p.R555H 0.29 tolerated(0.55) benign(0.003) TCGA-AD-A5EJ-01 8 22458551 22458551 C - C8orf58 Frame_Shift_Del p.R67Gfs*39 0.27 TCGA-AD-A5EJ-01 8 22464197 22464198 - T CCAR2 Frame_Shift_Ins p.Q79Sfs*14 0.16 TCGA-AD-A5EJ-01 8 22494456 22494456 C A BIN3 Missense_Mutation p.R26M 0.18 deleterious(0) probably_damaging(0.986) TCGA-AD-A5EJ-01 8 23058050 23058050 G A TNFRSF10A Missense_Mutation p.A256V 0.31 tolerated(0.46) benign(0.026) TCGA-AD-A5EJ-01 8 25298100 25298100 T C KCTD9 Missense_Mutation p.T102A 0.06 deleterious(0) probably_damaging(0.964) TCGA-AD-A5EJ-01 8 27094280 27094280 C T STMN4 3'UTR 0.25 TCGA-AD-A5EJ-01 8 27297755 27297755 C T PTK2B Silent p.A612A 0.32 TCGA-AD-A5EJ-01 8 27634297 27634297 G A ESCO2 Missense_Mutation p.V158I 0.34 tolerated(0.26) benign(0.005) TCGA-AD-A5EJ-01 8 27903075 27903075 G A NUGGC Missense_Mutation p.T472I 0.08 tolerated(0.81) benign(0.004) TCGA-AD-A5EJ-01 8 2910116 2910116 C T CSMD1 Missense_Mutation p.E2510K 0.44 benign(0.388) TCGA-AD-A5EJ-01 8 30541683 30541683 C T GSR Missense_Mutation p.V359I 0.29 deleterious(0) benign(0.18) TCGA-AD-A5EJ-01 8 30560643 30560643 T C GSR Missense_Mutation p.M203V 0.36 tolerated(0.55) benign(0.001) TCGA-AD-A5EJ-01 8 30701411 30701412 - T TEX15 Frame_Shift_Ins p.R1708Kfs*6 0.34 TCGA-AD-A5EJ-01 8 37687381 37687381 C T GPR124 Silent p.T189T 0.33 TCGA-AD-A5EJ-01 8 38826155 38826155 G A PLEKHA2 Missense_Mutation p.A295T 0.08 deleterious(0.03) benign(0.025) TCGA-AD-A5EJ-01 8 41551480 41551480 G A ANK1 Silent p.T1197T 0.35 TCGA-AD-A5EJ-01 8 42038078 42038078 G A PLAT Missense_Mutation p.R339W 0.23 tolerated(0.17) possibly_damaging(0.898) TCGA-AD-A5EJ-01 8 43147783 43147783 C T POTEA RNA 0.34 TCGA-AD-A5EJ-01 8 56922697 56922697 G - LYN 3'UTR 0.08 TCGA-AD-A5EJ-01 8 6360490 6360490 G A ANGPT2 3'UTR 0.40 TCGA-AD-A5EJ-01 8 6420187 6420187 T C ANGPT2 Missense_Mutation p.N90S 0.39 tolerated(0.22) probably_damaging(0.997) TCGA-AD-A5EJ-01 8 70588896 70588896 A G SLCO5A1 Silent p.D679D 0.11 TCGA-AD-A5EJ-01 8 70981447 70981447 C T PRDM14 Missense_Mutation p.A217T 0.31 tolerated(0.48) benign(0.005) TCGA-AD-A5EJ-01 8 70981936 70981936 G A PRDM14 Missense_Mutation p.R54W 0.20 deleterious(0.03) benign(0.446) TCGA-AD-A5EJ-01 8 73480397 73480397 A - KCNB2 Frame_Shift_Del p.E146Nfs*3 0.29 TCGA-AD-A5EJ-01 8 81733778 81733778 T - ZNF704 Frame_Shift_Del p.M18Cfs*15 0.21 TCGA-AD-A5EJ-01 8 86129664 86129664 T - C8orf59 Frame_Shift_Del p.N22Tfs*18 0.30 TCGA-AD-A5EJ-01 8 86163119 86163119 G A CA13 Missense_Mutation p.S63N 0.34 tolerated(1) benign(0.002) TCGA-AD-A5EJ-01 8 88885187 88885187 G A DCAF4L2 Missense_Mutation p.T338M 0.38 deleterious(0.01) probably_damaging(0.953) TCGA-AD-A5EJ-01 8 95140516 95140516 A G CDH17 Silent p.D817D 0.35 TCGA-AD-A5EJ-01 8 95531563 95531563 A - KIAA1429 Frame_Shift_Del p.F721Lfs*11 0.38 TCGA-AD-A5EJ-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.33 TCGA-AD-A5EJ-01 8 95837187 95837187 A - INTS8 Frame_Shift_Del p.N67Tfs*15 0.21 TCGA-AD-A5EJ-01 8 97296346 97296346 C G PTDSS1 Missense_Mutation p.T94S 0.24 deleterious(0.01) possibly_damaging(0.524) TCGA-AD-A5EJ-01 8 98900320 98900320 G A MATN2 5'UTR 0.40 TCGA-AD-A5EJ-01 8 98943420 98943420 C T MATN2 Missense_Mutation p.R128W 0.26 deleterious(0.01) probably_damaging(0.93) TCGA-AD-A5EJ-01 8 99168468 99168468 A - POP1 Frame_Shift_Del p.T752Lfs*12 0.22 TCGA-AD-A5EJ-01 9 103338934 103338934 T - TMEFF1 3'UTR 0.09 TCGA-AD-A5EJ-01 9 109690316 109690317 - T ZNF462 Frame_Shift_Ins p.E1377Rfs*10 0.25 TCGA-AD-A5EJ-01 9 112705314 112705314 G T PALM2 Missense_Mutation p.R282M 0.37 tolerated(0.14) possibly_damaging(0.571) TCGA-AD-A5EJ-01 9 113191589 113191589 C T SVEP1 Missense_Mutation p.G1881S 0.48 probably_damaging(1) TCGA-AD-A5EJ-01 9 115806416 115806416 T - ZFP37 Frame_Shift_Del p.N161Ifs*24 0.41 TCGA-AD-A5EJ-01 9 116060423 116060423 G A RNF183 Silent p.P14P 0.24 TCGA-AD-A5EJ-01 9 117266505 117266505 C T DFNB31 Missense_Mutation p.D193N 0.20 tolerated(0.13) possibly_damaging(0.73) TCGA-AD-A5EJ-01 9 117389271 117389271 G A C9orf91 Silent p.R103R 0.29 TCGA-AD-A5EJ-01 9 121929650 121929650 G A BRINP1 Silent p.A666A 0.40 TCGA-AD-A5EJ-01 9 123550174 123550174 C A FBXW2 Missense_Mutation p.K121N 0.33 tolerated(0.18) benign(0.014) TCGA-AD-A5EJ-01 9 125932275 125932275 A G STRBP Silent p.S147S 0.47 TCGA-AD-A5EJ-01 9 127074825 127074825 C T NEK6 Missense_Mutation p.A77V 0.31 tolerated(0.1) benign(0.051) TCGA-AD-A5EJ-01 9 127216353 127216353 C T GPR144 Missense_Mutation p.P352L 0.29 tolerated(0.07) benign(0) TCGA-AD-A5EJ-01 9 128724417 128724417 A G PBX3 Missense_Mutation p.D349G 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-AD-A5EJ-01 9 129642644 129642644 G A ZBTB34 Silent p.G318G 0.32 TCGA-AD-A5EJ-01 9 129646764 129646764 T - ZBTB34 3'UTR 0.34 TCGA-AD-A5EJ-01 9 129796755 129796755 G T RALGPS1 Missense_Mutation p.A88S 0.29 tolerated(0.22) benign(0.181) TCGA-AD-A5EJ-01 9 130198186 130198186 G T ZNF79 Splice_Site p.X78_splice 0.30 TCGA-AD-A5EJ-01 9 130444788 130444788 C T STXBP1 Missense_Mutation p.R551C 0.20 deleterious(0) possibly_damaging(0.897) TCGA-AD-A5EJ-01 9 131336962 131336962 G A SPTAN1 Silent p.L124L 0.06 TCGA-AD-A5EJ-01 9 131370495 131370495 G A SPTAN1 Silent p.L1477L 0.18 TCGA-AD-A5EJ-01 9 132397613 132397613 G T NTMT1 Missense_Mutation p.S181I 0.23 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 9 133759416 133759416 C T ABL1 Missense_Mutation p.P599L 0.17 tolerated_low_confidence(0.23) benign(0.049) TCGA-AD-A5EJ-01 9 133932496 133932496 G A LAMC3 Missense_Mutation p.C707Y 0.37 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 9 133954573 133954573 C T LAMC3 Missense_Mutation p.A1272V 0.14 tolerated(0.93) benign(0.002) TCGA-AD-A5EJ-01 9 134366812 134366812 C T PRRC2B Silent p.L2076L 0.36 TCGA-AD-A5EJ-01 9 135204309 135204309 A G SETX Silent p.D892D 0.30 TCGA-AD-A5EJ-01 9 135537661 135537661 A C DDX31 Missense_Mutation p.L237R 0.16 deleterious(0) probably_damaging(0.996) TCGA-AD-A5EJ-01 9 135782168 135782168 A - TSC1 Frame_Shift_Del p.L463* 0.26 TCGA-AD-A5EJ-01 9 136131559 136131559 G A RP11-430N14.4 5'Flank 0.25 TCGA-AD-A5EJ-01 9 136200589 136200589 G A SURF6 Nonsense_Mutation p.R120* 0.32 TCGA-AD-A5EJ-01 9 136516854 136516854 G A DBH Silent p.E430E 0.23 TCGA-AD-A5EJ-01 9 137019598 137019598 C - WDR5 Frame_Shift_Del p.V217Cfs*4 0.28 TCGA-AD-A5EJ-01 9 137023210 137023210 T C WDR5 3'UTR 0.25 TCGA-AD-A5EJ-01 9 138664610 138664610 C T KCNT1 Silent p.S686S 0.41 TCGA-AD-A5EJ-01 9 139100689 139100689 A G QSOX2 Missense_Mutation p.M661T 0.09 deleterious(0) probably_damaging(0.96) TCGA-AD-A5EJ-01 9 139256491 139256491 G - DNLZ Frame_Shift_Del p.S171Afs*? 0.25 TCGA-AD-A5EJ-01 9 139879516 139879516 C T LCNL1 3'UTR 0.28 TCGA-AD-A5EJ-01 9 139973436 139973436 G - UAP1L1 Frame_Shift_Del p.G228Afs*125 0.18 TCGA-AD-A5EJ-01 9 140034053 140034053 G T GRIN1 Nonsense_Mutation p.E39* 0.27 TCGA-AD-A5EJ-01 9 140115175 140115175 G A RNF208 Missense_Mutation p.H164Y 0.36 deleterious(0) probably_damaging(0.986) TCGA-AD-A5EJ-01 9 140139770 140139771 - G FAM166A Frame_Shift_Ins p.R171Qfs*12 0.15 TCGA-AD-A5EJ-01 9 140246651 140246651 G A EXD3 Missense_Mutation p.A347V 0.36 tolerated(0.68) benign(0.005) TCGA-AD-A5EJ-01 9 140669652 140669652 G A EHMT1 Missense_Mutation p.G580D 0.17 tolerated(0.06) benign(0.265) TCGA-AD-A5EJ-01 9 15474030 15474032 CTT - PSIP1 In_Frame_Del p.E278del 0.32 TCGA-AD-A5EJ-01 9 16435982 16435982 G A BNC2 Missense_Mutation p.S737F 0.31 deleterious(0.05) benign(0.254) TCGA-AD-A5EJ-01 9 18680368 18680368 C T ADAMTSL1 Missense_Mutation p.R399W 0.27 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 9 19058323 19058323 T A HAUS6 Missense_Mutation p.E814D 0.32 tolerated(0.38) benign(0.019) TCGA-AD-A5EJ-01 9 20414361 20414361 G A MLLT3 Silent p.S161S 0.19 TCGA-AD-A5EJ-01 9 21077633 21077633 G A IFNB1 Missense_Mutation p.T79I 0.15 tolerated(0.36) benign(0) TCGA-AD-A5EJ-01 9 2647572 2647572 G T VLDLR Missense_Mutation p.W601L 0.41 deleterious(0.03) probably_damaging(0.982) TCGA-AD-A5EJ-01 9 32544143 32544143 C T TOPORS Missense_Mutation p.C127Y 0.41 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 9 32544241 32544241 T C TOPORS Silent p.P94P 0.35 TCGA-AD-A5EJ-01 9 33973227 33973227 G A UBAP2 Missense_Mutation p.R177C 0.27 deleterious(0.03) probably_damaging(0.98) TCGA-AD-A5EJ-01 9 35560101 35560102 - GCT RUSC2 In_Frame_Ins p.L1160dup 0.24 TCGA-AD-A5EJ-01 9 35846533 35846533 G A TMEM8B Missense_Mutation p.D189N 0.22 deleterious(0.03) benign(0.332) TCGA-AD-A5EJ-01 9 35957140 35957140 T C OR2S2 Missense_Mutation p.Q319R 0.25 tolerated(0.35) benign(0.002) TCGA-AD-A5EJ-01 9 36211784 36211784 T C CLTA 3'UTR 0.29 TCGA-AD-A5EJ-01 9 37518191 37518191 G A FBXO10 Silent p.I815I 0.31 TCGA-AD-A5EJ-01 9 37768121 37768121 A - TRMT10B Frame_Shift_Del p.A159Lfs*23 0.10 TCGA-AD-A5EJ-01 9 37888070 37888070 C T SLC25A51 Missense_Mutation p.A160T 0.19 tolerated(0.2) benign(0.181) TCGA-AD-A5EJ-01 9 5054721 5054721 T C JAK2 Missense_Mutation p.L258P 0.33 deleterious(0) possibly_damaging(0.828) TCGA-AD-A5EJ-01 9 69256859 69256859 C T CBWD6 Missense_Mutation p.S91N 0.04 tolerated(0.21) possibly_damaging(0.838) TCGA-AD-A5EJ-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.06 deleterious(0.01) possibly_damaging(0.573) TCGA-AD-A5EJ-01 9 71831375 71831375 C A TJP2 Missense_Mutation p.L110I 0.14 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 9 73150478 73150478 C T TRPM3 3'UTR 0.53 TCGA-AD-A5EJ-01 9 73167767 73167767 G A TRPM3 Silent p.Y1177Y 0.30 TCGA-AD-A5EJ-01 9 77642980 77642981 - CTC C9orf41 In_Frame_Ins p.E59dup 0.44 TCGA-AD-A5EJ-01 9 79318927 79318927 T G PRUNE2 Missense_Mutation p.E2534D 0.15 tolerated(0.85) benign(0.034) TCGA-AD-A5EJ-01 9 79917830 79917830 G T VPS13A Splice_Site p.X1271_splice 0.29 TCGA-AD-A5EJ-01 9 79931118 79931118 A T VPS13A Missense_Mutation p.E1553D 0.33 deleterious(0.04) benign(0.177) TCGA-AD-A5EJ-01 9 79952283 79952283 A - VPS13A Frame_Shift_Del p.N2071Tfs*18 0.19 TCGA-AD-A5EJ-01 9 80943972 80943973 - A PSAT1 Frame_Shift_Ins p.F364Ifs*12 0.13 TCGA-AD-A5EJ-01 9 8528682 8528682 A G PTPRD Silent p.S150S 0.41 TCGA-AD-A5EJ-01 9 85905575 85905575 G T FRMD3 Missense_Mutation p.L380M 0.09 tolerated(0.08) probably_damaging(0.997) TCGA-AD-A5EJ-01 9 86518428 86518428 G T KIF27 Silent p.A335A 0.26 TCGA-AD-A5EJ-01 9 89763658 89763658 C T C9orf170 Missense_Mutation p.R5C 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.835) TCGA-AD-A5EJ-01 9 90535986 90535986 G T SPATA31C1 RNA 0.34 TCGA-AD-A5EJ-01 9 90584835 90584835 C A CDK20 Splice_Site p.X188_splice 0.13 TCGA-AD-A5EJ-01 9 91083363 91083363 G T SPIN1 Missense_Mutation p.E144D 0.17 tolerated(0.11) benign(0.005) TCGA-AD-A5EJ-01 9 93606152 93606152 G A SYK 5'UTR 0.17 TCGA-AD-A5EJ-01 9 93983102 93983102 T G AUH Missense_Mutation p.R276S 0.44 deleterious(0.01) possibly_damaging(0.78) TCGA-AD-A5EJ-01 9 95076761 95076761 C T NOL8 Missense_Mutation p.G716S 0.35 tolerated(1) benign(0) TCGA-AD-A5EJ-01 9 99154713 99154713 G A ZNF367 Missense_Mutation p.A266V 0.35 tolerated(0.72) benign(0.015) TCGA-AD-A5EJ-01 9 99581000 99581000 T C ZNF782 Silent p.S435S 0.10 TCGA-AD-A5EJ-01 X 100400126 100400126 G A CENPI Missense_Mutation p.A547T 0.21 deleterious(0) possibly_damaging(0.851) TCGA-AD-A5EJ-01 X 100536708 100536709 - T TAF7L Frame_Shift_Ins p.V241Gfs*3 0.41 TCGA-AD-A5EJ-01 X 101396295 101396295 T - TCEAL6 Frame_Shift_Del p.K3Nfs*20 0.22 TCGA-AD-A5EJ-01 X 10181861 10181861 G A CLCN4 Missense_Mutation p.E573K 0.32 deleterious(0) possibly_damaging(0.627) TCGA-AD-A5EJ-01 X 101913482 101913482 T - GPRASP1 3'UTR 0.27 TCGA-AD-A5EJ-01 X 101970890 101970890 A G GPRASP2 Missense_Mutation p.R365G 0.05 tolerated(0.4) benign(0.004) TCGA-AD-A5EJ-01 X 102003967 102003967 A - BHLHB9 Frame_Shift_Del p.K17Rfs*21 0.23 TCGA-AD-A5EJ-01 X 102755379 102755379 G A RAB40A Silent p.F102F 0.33 TCGA-AD-A5EJ-01 X 102885617 102885617 A - TCEAL1 3'UTR 0.31 TCGA-AD-A5EJ-01 X 103080278 103080278 C A RAB9B Missense_Mutation p.G146V 0.41 deleterious(0.01) probably_damaging(0.975) TCGA-AD-A5EJ-01 X 106840785 106840785 G T FRMPD3 Missense_Mutation p.R592L 0.31 deleterious(0) probably_damaging(0.997) TCGA-AD-A5EJ-01 X 107979506 107979506 C T IRS4 Silent p.A23A 0.08 TCGA-AD-A5EJ-01 X 108867794 108867794 G A KCNE1L 3'UTR 0.23 TCGA-AD-A5EJ-01 X 108867968 108867968 C T KCNE1L Silent p.P94P 0.30 TCGA-AD-A5EJ-01 X 112065639 112065639 G - AMOT Frame_Shift_Del p.P239Hfs*14 0.30 TCGA-AD-A5EJ-01 X 117960714 117960714 A - ZCCHC12 3'UTR 0.19 TCGA-AD-A5EJ-01 X 118767398 118767398 T - SEPT6 Frame_Shift_Del p.E339Kfs*4 0.20 TCGA-AD-A5EJ-01 X 119496076 119496076 G A ATP1B4 Missense_Mutation p.R18H 0.24 tolerated_low_confidence(0.19) benign(0.005) TCGA-AD-A5EJ-01 X 120181769 120181769 C T GLUD2 Silent p.G77G 0.35 TCGA-AD-A5EJ-01 X 122459909 122459909 G A GRIA3 Missense_Mutation p.A181T 0.34 tolerated(0.17) probably_damaging(1) TCGA-AD-A5EJ-01 X 122532510 122532510 C T GRIA3 Silent p.D312D 0.23 TCGA-AD-A5EJ-01 X 123190006 123190006 G T STAG2 Missense_Mutation p.D409Y 0.27 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 X 125954644 125954644 T A CXorf64 Missense_Mutation p.L8H 0.41 deleterious(0) probably_damaging(0.984) TCGA-AD-A5EJ-01 X 128642026 128642026 G A SMARCA1 Silent p.C286C 0.05 TCGA-AD-A5EJ-01 X 128927617 128927617 G A SASH3 Splice_Site p.X318_splice 0.31 TCGA-AD-A5EJ-01 X 129147515 129147515 C T BCORL1 Missense_Mutation p.P256L 0.27 unknown(0) TCGA-AD-A5EJ-01 X 129148636 129148636 C T BCORL1 Missense_Mutation p.R630C 0.33 probably_damaging(0.994) TCGA-AD-A5EJ-01 X 129200741 129200741 T C ELF4 Silent p.P649P 0.36 TCGA-AD-A5EJ-01 X 129629281 129629281 C T RP1-274L7.1 Intron 0.18 TCGA-AD-A5EJ-01 X 1317674 1317674 A G CRLF2 Intron 0.16 TCGA-AD-A5EJ-01 X 134185842 134185842 G A FAM127B Silent p.A99A 0.28 TCGA-AD-A5EJ-01 X 134680346 134680346 C A DDX26B Silent p.T127T 0.20 TCGA-AD-A5EJ-01 X 135313913 135313913 C T MAP7D3 Silent p.L401L 0.32 TCGA-AD-A5EJ-01 X 135956336 135956336 G A RBMX Nonsense_Mutation p.R381* 0.23 TCGA-AD-A5EJ-01 X 136113414 136113415 - G GPR101 Frame_Shift_Ins p.S141Vfs*36 0.19 TCGA-AD-A5EJ-01 X 139038480 139038480 G A CXorf66 Missense_Mutation p.P221S 0.27 tolerated(0.25) probably_damaging(0.932) TCGA-AD-A5EJ-01 X 139865753 139865753 C A CDR1 Missense_Mutation p.W260L 0.20 deleterious_low_confidence(0) benign(0.005) TCGA-AD-A5EJ-01 X 140992783 140992783 G A MAGEC1 5'UTR 0.31 TCGA-AD-A5EJ-01 X 142718949 142718949 T C SLITRK4 5'UTR 0.31 TCGA-AD-A5EJ-01 X 144905424 144905424 C A SLITRK2 Missense_Mutation p.T494K 0.33 deleterious(0.03) possibly_damaging(0.644) TCGA-AD-A5EJ-01 X 145075860 145075860 G T MIR890 RNA 0.24 TCGA-AD-A5EJ-01 X 147026456 147026456 G A FMR1 Nonsense_Mutation p.W513* 0.15 TCGA-AD-A5EJ-01 X 147743718 147743718 C A AFF2 Missense_Mutation p.P157H 0.35 deleterious(0.05) possibly_damaging(0.879) TCGA-AD-A5EJ-01 X 148035195 148035195 G A AFF2 Missense_Mutation p.E495K 0.32 tolerated(0.07) benign(0.371) TCGA-AD-A5EJ-01 X 149106835 149106835 C T CXorf40B 5'UTR 0.21 TCGA-AD-A5EJ-01 X 149931175 149931175 C T MTMR1 Silent p.S657S 0.06 TCGA-AD-A5EJ-01 X 151909300 151909300 C T CSAG1 3'UTR 0.34 TCGA-AD-A5EJ-01 X 152770762 152770762 T C BGN Missense_Mutation p.I102T 0.30 deleterious(0) probably_damaging(0.999) TCGA-AD-A5EJ-01 X 152959380 152959380 G A SLC6A8 Missense_Mutation p.A388T 0.28 deleterious(0.02) possibly_damaging(0.902) TCGA-AD-A5EJ-01 X 153030932 153030933 - C PLXNB3 5'UTR 0.30 TCGA-AD-A5EJ-01 X 153040503 153040503 G A PLXNB3 Missense_Mutation p.R1390H 0.37 deleterious(0.04) benign(0.003) TCGA-AD-A5EJ-01 X 153043402 153043402 G A PLXNB3 Splice_Site p.X1777_splice 0.42 TCGA-AD-A5EJ-01 X 153055685 153055685 C T IDH3G Silent p.G66G 0.20 TCGA-AD-A5EJ-01 X 153224175 153224175 C T HCFC1 Missense_Mutation p.A550T 0.34 deleterious(0) probably_damaging(0.991) TCGA-AD-A5EJ-01 X 153578524 153578524 T C FLNA Missense_Mutation p.D2403G 0.31 deleterious(0.05) possibly_damaging(0.457) TCGA-AD-A5EJ-01 X 153589789 153589789 G A FLNA Missense_Mutation p.R1032C 0.13 deleterious(0.01) possibly_damaging(0.871) TCGA-AD-A5EJ-01 X 153944388 153944388 G A GAB3 Silent p.L97L 0.14 TCGA-AD-A5EJ-01 X 154013399 154013399 G A MPP1 Silent p.S237S 0.14 TCGA-AD-A5EJ-01 X 15415641 15415641 G A PIR Missense_Mutation p.A208V 0.29 tolerated(0.37) benign(0.001) TCGA-AD-A5EJ-01 X 22051057 22051057 C T PHEX 5'UTR 0.36 TCGA-AD-A5EJ-01 X 2408656 2408656 G A ZBED1 Silent p.A35A 0.20 TCGA-AD-A5EJ-01 X 27765568 27765568 C T DCAF8L2 Missense_Mutation p.R186C 0.11 deleterious(0.03) benign(0.119) TCGA-AD-A5EJ-01 X 2873545 2873545 G A ARSE Silent p.G73G 0.18 TCGA-AD-A5EJ-01 X 34150286 34150286 C T FAM47A Missense_Mutation p.R37H 0.35 tolerated(0.28) probably_damaging(0.967) TCGA-AD-A5EJ-01 X 34961431 34961431 C T FAM47B Silent p.D161D 0.19 TCGA-AD-A5EJ-01 X 37965963 37965964 - T SYTL5 Frame_Shift_Ins p.V449Cfs*12 0.22 TCGA-AD-A5EJ-01 X 46884301 46884301 G T JADE3 Missense_Mutation p.D154Y 0.25 deleterious(0) probably_damaging(0.956) TCGA-AD-A5EJ-01 X 47270086 47270086 C T ZNF157 Silent p.C69C 0.30 TCGA-AD-A5EJ-01 X 48419268 48419268 C T TBC1D25 Missense_Mutation p.R658C 0.33 deleterious(0) benign(0.446) TCGA-AD-A5EJ-01 X 48665091 48665091 C T HDAC6 Missense_Mutation p.R204W 0.21 deleterious(0) probably_damaging(0.995) TCGA-AD-A5EJ-01 X 48687893 48687893 C T ERAS Silent p.F120F 0.32 TCGA-AD-A5EJ-01 X 48776072 48776073 - G PIM2 Frame_Shift_Ins p.G14Rfs*27 0.27 TCGA-AD-A5EJ-01 X 48838260 48838261 - CTG GRIPAP1 In_Frame_Ins p.Q541dup 0.25 TCGA-AD-A5EJ-01 X 49104962 49104963 - A CCDC22 Frame_Shift_Ins p.L438Afs*28 0.10 TCGA-AD-A5EJ-01 X 49107832 49107832 C A FOXP3 Missense_Mutation p.R420M 0.10 deleterious(0) probably_damaging(1) TCGA-AD-A5EJ-01 X 49110466 49110466 T C FOXP3 Silent p.P293P 0.07 TCGA-AD-A5EJ-01 X 49142945 49142945 C T PPP1R3F Missense_Mutation p.S598L 0.28 deleterious_low_confidence(0) benign(0.36) TCGA-AD-A5EJ-01 X 49595680 49595680 G A PAGE4 Silent p.P53P 0.35 TCGA-AD-A5EJ-01 X 52679406 52679406 C T SSX7 Silent p.P109P 0.31 TCGA-AD-A5EJ-01 X 53575207 53575207 G A HUWE1 Missense_Mutation p.R3355W 0.30 possibly_damaging(0.689) TCGA-AD-A5EJ-01 X 54785156 54785156 G A ITIH6 Missense_Mutation p.R451C 0.26 tolerated(0.25) benign(0.01) TCGA-AD-A5EJ-01 X 54817470 54817470 C T ITIH6 Missense_Mutation p.G139D 0.12 deleterious(0) possibly_damaging(0.891) TCGA-AD-A5EJ-01 X 54817486 54817486 T C ITIH6 Missense_Mutation p.T134A 0.10 tolerated(0.16) possibly_damaging(0.56) TCGA-AD-A5EJ-01 X 54954149 54954149 T A TRO Missense_Mutation p.F605I 0.39 deleterious(0.03) unknown(0) TCGA-AD-A5EJ-01 X 55041244 55041244 C T ALAS2 Missense_Mutation p.R458H 0.33 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EJ-01 X 55057399 55057399 C T ALAS2 5'UTR 0.38 TCGA-AD-A5EJ-01 X 55651085 55651085 C T FOXR2 3'UTR 0.32 TCGA-AD-A5EJ-01 X 57936947 57936947 A - ZXDA 5'UTR 0.37 TCGA-AD-A5EJ-01 X 591733 591733 C T SHOX Missense_Mutation p.T34M 0.35 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-AD-A5EJ-01 X 62570787 62570788 - T SPIN4 5'UTR 0.21 TCGA-AD-A5EJ-01 X 66765966 66765966 C T AR Silent p.G326G 0.12 TCGA-AD-A5EJ-01 X 69672602 69672602 C T DLG3 Intron 0.24 TCGA-AD-A5EJ-01 X 70145724 70145724 C T SLC7A3 Missense_Mutation p.R600H 0.27 tolerated(0.14) benign(0.001) TCGA-AD-A5EJ-01 X 70367626 70367626 G A NLGN3 Silent p.S9S 0.26 TCGA-AD-A5EJ-01 X 70514146 70514146 C T NONO Missense_Mutation p.R140C 0.34 deleterious(0.03) benign(0.385) TCGA-AD-A5EJ-01 X 70823742 70823742 C T ACRC Silent p.S205S 0.38 TCGA-AD-A5EJ-01 X 7177656 7177656 C A STS Missense_Mutation p.L222I 0.35 tolerated(0.19) benign(0.089) TCGA-AD-A5EJ-01 X 73751203 73751203 G A SLC16A2 Missense_Mutation p.A479T 0.29 deleterious(0) probably_damaging(0.972) TCGA-AD-A5EJ-01 X 78011061 78011061 G A LPAR4 Missense_Mutation p.R232H 0.31 tolerated(0.06) possibly_damaging(0.557) TCGA-AD-A5EJ-01 X 79277847 79277847 C A TBX22 Missense_Mutation p.P27T 0.06 tolerated(0.31) benign(0.003) TCGA-AD-A5EJ-01 X 79699087 79699087 A G FAM46D Missense_Mutation p.Q350R 0.38 deleterious(0.05) possibly_damaging(0.874) TCGA-AD-A5EJ-01 X 79947385 79947385 C - BRWD3 Frame_Shift_Del p.A1140Lfs*42 0.09 TCGA-AD-A5EJ-01 X 80370463 80370463 T - HMGN5 Frame_Shift_Del p.G179Vfs*48 0.15 TCGA-AD-A5EJ-01 X 8507758 8507758 C T KAL1 Missense_Mutation p.A466T 0.38 tolerated(0.52) benign(0.019) TCGA-AD-A5EJ-01 X 8764320 8764320 T - FAM9A Frame_Shift_Del p.K159Nfs*3 0.26 TCGA-AD-A5EJ-01 X 91090570 91090570 G A PCDH11X Missense_Mutation p.A23T 0.03 deleterious(0) probably_damaging(0.93) TCGA-AD-A5EJ-01 X 91642812 91642812 G A PCDH11X Missense_Mutation p.A1075T 0.33 tolerated(1) benign(0.003) TCGA-AD-A5EJ-01 X 92966933 92966933 C A FAM133A 3'UTR 0.42 TCGA-AD-A5EJ-01 X 96139929 96139929 G A RPA4 Missense_Mutation p.R207H 0.35 tolerated(0.34) benign(0.133) TCGA-AD-A5EK-01 10 16932462 16932462 G A CUBN Missense_Mutation p.P2888L 0.52 deleterious(0.03) probably_damaging(1) TCGA-AD-A5EK-01 10 81917432 81917432 G A ANXA11 Missense_Mutation p.R475W 0.46 deleterious(0) probably_damaging(0.995) TCGA-AD-A5EK-01 11 103187333 103187333 T C DYNC2H1 Silent p.I3910I 0.46 TCGA-AD-A5EK-01 11 1262377 1262377 C T MUC5B Missense_Mutation p.R1423W 0.36 unknown(0) TCGA-AD-A5EK-01 11 3688865 3688865 G A CHRNA10 Silent p.D164D 0.35 TCGA-AD-A5EK-01 11 5730403 5730403 C A TRIM22 Missense_Mutation p.A341D 0.28 tolerated(1) benign(0.003) TCGA-AD-A5EK-01 11 62458124 62458124 G A BSCL2 Silent p.P398P 0.35 TCGA-AD-A5EK-01 11 67764211 67764211 G A UNC93B1 Silent p.I316I 0.41 TCGA-AD-A5EK-01 11 77314647 77314647 G A AQP11 Silent p.S222S 0.35 TCGA-AD-A5EK-01 12 105508988 105508988 C G KIAA1033 Silent p.L116L 0.36 TCGA-AD-A5EK-01 12 117718592 117718592 C T NOS1 Missense_Mutation p.A488T 0.41 deleterious(0) probably_damaging(0.946) TCGA-AD-A5EK-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.56 deleterious(0) benign(0.361) TCGA-AD-A5EK-01 12 4923556 4923556 C T KCNA6 3'UTR 0.44 TCGA-AD-A5EK-01 12 5020839 5020839 G A KCNA1 Missense_Mutation p.G99S 0.39 deleterious(0.01) probably_damaging(0.968) TCGA-AD-A5EK-01 12 5154058 5154058 G A KCNA5 Missense_Mutation p.A249T 0.59 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EK-01 12 52451023 52451023 C A NR4A1 Missense_Mutation p.F460L 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-AD-A5EK-01 12 6122726 6122726 G A VWF Silent p.N1847N 0.35 TCGA-AD-A5EK-01 12 91550949 91550949 C T DCN Silent p.P185P 0.38 TCGA-AD-A5EK-01 13 110818594 110818594 C T COL4A1 Missense_Mutation p.V1336I 0.30 benign(0.124) TCGA-AD-A5EK-01 13 53418811 53418811 G T PCDH8 Missense_Mutation p.L1033I 0.27 tolerated(0.14) benign(0.393) TCGA-AD-A5EK-01 13 66878773 66878773 C T PCDH9 3'UTR 0.10 TCGA-AD-A5EK-01 14 24791282 24791282 C T ADCY4 Missense_Mutation p.R859Q 0.39 tolerated(0.36) probably_damaging(0.995) TCGA-AD-A5EK-01 14 44974878 44974878 C T FSCB Missense_Mutation p.R438Q 0.55 tolerated(0.61) benign(0.001) TCGA-AD-A5EK-01 14 92959983 92959983 C T SLC24A4 3'UTR 0.40 TCGA-AD-A5EK-01 15 24927101 24927101 G T NPAP1 3'UTR 0.32 TCGA-AD-A5EK-01 15 26026181 26026181 G A ATP10A Silent p.R213R 0.36 TCGA-AD-A5EK-01 15 81585001 81585001 C T IL16 Missense_Mutation p.R509C 0.37 deleterious(0) probably_damaging(1) TCGA-AD-A5EK-01 15 88680765 88680765 G T NTRK3 Nonsense_Mutation p.C164* 0.38 TCGA-AD-A5EK-01 16 1254132 1254132 G T CACNA1H Missense_Mutation p.D709Y 0.84 deleterious(0) possibly_damaging(0.867) TCGA-AD-A5EK-01 16 19548620 19548620 G A CCP110 Silent p.K543K 0.36 TCGA-AD-A5EK-01 16 47683033 47683033 C A PHKB Missense_Mutation p.T572N 0.36 deleterious(0) probably_damaging(0.995) TCGA-AD-A5EK-01 16 57392781 57392781 C T CCL22 Missense_Mutation p.A18V 0.39 tolerated(1) unknown(0) TCGA-AD-A5EK-01 17 18389369 18389369 G A LGALS9C Missense_Mutation p.E85K 0.81 deleterious(0) probably_damaging(1) TCGA-AD-A5EK-01 17 38936058 38936058 G A KRT27 Missense_Mutation p.A247V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-AD-A5EK-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.68 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EK-01 18 56586092 56586092 G A ZNF532 Silent p.T191T 0.81 TCGA-AD-A5EK-01 19 11233926 11233926 G A LDLR Silent p.Q739Q 0.29 TCGA-AD-A5EK-01 19 12817269 12817269 C G TNPO2 Intron 0.30 TCGA-AD-A5EK-01 19 19656796 19656796 C T CILP2 Missense_Mutation p.R1148C 0.28 deleterious_low_confidence(0) benign(0.432) TCGA-AD-A5EK-01 19 19681549 19681549 G A PBX4 Missense_Mutation p.P96L 0.29 deleterious(0.01) benign(0.35) TCGA-AD-A5EK-01 19 281329 281329 C G PPAP2C 3'Flank 0.27 TCGA-AD-A5EK-01 19 41019388 41019388 G A SPTBN4 Missense_Mutation p.G898S 0.61 tolerated(0.27) possibly_damaging(0.754) TCGA-AD-A5EK-01 19 41073620 41073620 G A SPTBN4 Missense_Mutation p.G2130R 0.24 deleterious(0) possibly_damaging(0.484) TCGA-AD-A5EK-01 19 5131279 5131279 C T KDM4B Missense_Mutation p.P503L 0.35 benign(0) TCGA-AD-A5EK-01 19 5144342 5144342 C T KDM4B Silent p.I940I 0.28 TCGA-AD-A5EK-01 19 53644357 53644357 C A ZNF347 Missense_Mutation p.G576V 0.16 deleterious(0) probably_damaging(0.994) TCGA-AD-A5EK-01 19 55174402 55174402 C T LILRB4 5'UTR 0.27 TCGA-AD-A5EK-01 19 56090797 56090797 C T ZNF579 Missense_Mutation p.R70Q 0.38 deleterious(0.01) benign(0.043) TCGA-AD-A5EK-01 1 116534761 116534761 C A SLC22A15 Missense_Mutation p.A66D 0.37 tolerated(0.43) benign(0.003) TCGA-AD-A5EK-01 1 12855847 12855847 G T PRAMEF1 Missense_Mutation p.C376F 0.33 deleterious(0) benign(0.408) TCGA-AD-A5EK-01 1 146401786 146401786 G T NBPF12 Missense_Mutation p.Q298H 0.29 benign(0.398) TCGA-AD-A5EK-01 1 1469505 1469505 C T ATAD3A 3'UTR 0.39 TCGA-AD-A5EK-01 1 152883392 152883392 G A IVL Silent p.L373L 0.45 TCGA-AD-A5EK-01 1 161127434 161127434 C T UFC1 Missense_Mutation p.P95S 0.44 deleterious(0) probably_damaging(0.995) TCGA-AD-A5EK-01 1 33841004 33841004 G A PHC2 Missense_Mutation p.S46F 0.44 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EK-01 1 47399985 47399985 C T CYP4A11 Silent p.T317T 0.48 TCGA-AD-A5EK-01 1 47610275 47610275 G A CYP4A22 Silent p.T317T 0.14 TCGA-AD-A5EK-01 1 99767443 99767443 C A LPPR4 Missense_Mutation p.A319E 0.10 deleterious(0) probably_damaging(0.917) TCGA-AD-A5EK-01 20 1349926 1349926 A C FKBP1A 3'UTR 0.09 TCGA-AD-A5EK-01 20 1349948 1349948 A C FKBP1A 3'UTR 0.10 TCGA-AD-A5EK-01 20 23016284 23016284 C T SSTR4 Missense_Mutation p.A55V 0.15 tolerated(0.3) benign(0.377) TCGA-AD-A5EK-01 20 30530758 30530758 C T TTLL9 Silent p.N418N 0.76 TCGA-AD-A5EK-01 21 19638412 19638412 A G CHODL 3'UTR 0.29 TCGA-AD-A5EK-01 21 41684056 41684056 G A DSCAM Missense_Mutation p.R672W 0.34 deleterious(0.01) probably_damaging(0.969) TCGA-AD-A5EK-01 22 37603249 37603249 C T SSTR3 Silent p.P198P 0.38 TCGA-AD-A5EK-01 22 39413947 39413947 C T APOBEC3C Silent p.T117T 0.41 TCGA-AD-A5EK-01 22 42609586 42609586 C T TCF20 Missense_Mutation p.A576T 0.56 benign(0.002) TCGA-AD-A5EK-01 2 100911982 100911982 G T LONRF2 Missense_Mutation p.L504M 0.20 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EK-01 2 141083421 141083421 G A LRP1B Missense_Mutation p.R4084C 0.26 possibly_damaging(0.689) TCGA-AD-A5EK-01 2 215890474 215890474 G A ABCA12 Nonsense_Mutation p.R404* 0.20 TCGA-AD-A5EK-01 2 220285262 220285262 G T DES Missense_Mutation p.V261L 0.22 deleterious(0.02) benign(0.158) TCGA-AD-A5EK-01 2 227942634 227942634 G A COL4A4 Missense_Mutation p.P655S 0.59 probably_damaging(0.96) TCGA-AD-A5EK-01 2 233445716 233445716 G A AC073254.1 3'Flank 0.43 TCGA-AD-A5EK-01 2 24395609 24395609 G T FAM228A 5'Flank 0.44 TCGA-AD-A5EK-01 2 25377336 25377336 C A EFR3B 3'UTR 0.30 TCGA-AD-A5EK-01 2 26432747 26432747 C T HADHA Silent p.E329E 0.21 TCGA-AD-A5EK-01 2 27801022 27801022 C T C2orf16 Missense_Mutation p.T528M 0.30 tolerated(0.17) benign(0.005) TCGA-AD-A5EK-01 2 37347276 37347276 C G EIF2AK2 Missense_Mutation p.K358N 0.33 tolerated(0.12) benign(0.03) TCGA-AD-A5EK-01 2 50850529 50850529 C A NRXN1 Missense_Mutation p.A386S 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-AD-A5EK-01 2 98274907 98274907 C A ACTR1B Missense_Mutation p.V214F 0.27 deleterious(0) probably_damaging(0.992) TCGA-AD-A5EK-01 2 99439589 99439589 G A KIAA1211L Missense_Mutation p.P383S 0.64 tolerated(0.7) possibly_damaging(0.803) TCGA-AD-A5EK-01 3 112358141 112358141 G A CCDC80 Silent p.T204T 0.51 TCGA-AD-A5EK-01 3 119526101 119526101 G A NR1I2 Missense_Mutation p.E41K 0.37 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-AD-A5EK-01 3 133557057 133557057 C A RAB6B Missense_Mutation p.V150F 0.38 deleterious(0.01) possibly_damaging(0.474) TCGA-AD-A5EK-01 3 44701406 44701406 C T ZNF35 Silent p.L517L 0.45 TCGA-AD-A5EK-01 3 69079117 69079117 G A TMF1 Missense_Mutation p.R815C 0.34 deleterious(0) probably_damaging(1) TCGA-AD-A5EK-01 4 107845000 107845000 C T DKK2 3'UTR 0.26 TCGA-AD-A5EK-01 4 47559814 47559814 C A ATP10D Missense_Mutation p.P653Q 0.26 tolerated(0.06) probably_damaging(0.972) TCGA-AD-A5EK-01 4 5624604 5624604 G T EVC2 Missense_Mutation p.L721M 0.31 tolerated(0.1) probably_damaging(0.999) TCGA-AD-A5EK-01 5 112175411 112175411 G T APC Nonsense_Mutation p.E1374* 0.89 TCGA-AD-A5EK-01 5 140415 140415 A T PLEKHG4B 5'UTR 0.32 TCGA-AD-A5EK-01 5 140555659 140555659 C A PCDHB7 3'UTR 0.25 TCGA-AD-A5EK-01 5 16475313 16475313 G A FAM134B Missense_Mutation p.S344F 0.60 deleterious(0.04) possibly_damaging(0.775) TCGA-AD-A5EK-01 5 17275470 17275470 G A BASP1 Missense_Mutation p.A49T 0.34 tolerated(1) unknown(0) TCGA-AD-A5EK-01 5 23524614 23524614 G T PRDM9 Missense_Mutation p.K374N 0.50 tolerated(0.07) benign(0.074) TCGA-AD-A5EK-01 5 5182169 5182169 C T ADAMTS16 Nonsense_Mutation p.R172* 0.70 TCGA-AD-A5EK-01 5 56180522 56180524 AAG - MAP3K1 In_Frame_Del p.E1286del 0.56 TCGA-AD-A5EK-01 5 66055657 66055657 C A MAST4 Missense_Mutation p.L162I 0.55 benign(0.116) TCGA-AD-A5EK-01 5 79029584 79029584 G T CMYA5 Missense_Mutation p.D1666Y 0.21 possibly_damaging(0.667) TCGA-AD-A5EK-01 6 10419688 10419688 G A TFAP2A 5'Flank 0.41 TCGA-AD-A5EK-01 6 146755215 146755215 C T GRM1 Silent p.N956N 0.45 TCGA-AD-A5EK-01 6 170103567 170103567 C A C6orf120 3'UTR 0.52 TCGA-AD-A5EK-01 6 43227421 43227421 G A TTBK1 Silent p.G467G 0.38 TCGA-AD-A5EK-01 7 143792936 143792936 G A OR2A12 Missense_Mutation p.V246M 0.20 deleterious(0.04) possibly_damaging(0.868) TCGA-AD-A5EK-01 7 2958175 2958175 C G CARD11 Missense_Mutation p.G853R 0.20 deleterious(0) probably_damaging(0.988) TCGA-AD-A5EK-01 7 31617544 31617544 C A CCDC129 Silent p.V248V 0.65 TCGA-AD-A5EK-01 7 34097738 34097738 G A BMPER Missense_Mutation p.R332H 0.24 tolerated(0.55) benign(0.004) TCGA-AD-A5EK-01 7 41729838 41729838 G T INHBA Missense_Mutation p.L231M 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-AD-A5EK-01 7 44739861 44739861 G A OGDH Missense_Mutation p.R851Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-AD-A5EK-01 7 87483524 87483524 T G SLC25A40 Missense_Mutation p.T87P 0.20 deleterious(0) probably_damaging(0.98) TCGA-AD-A5EK-01 8 10756017 10756017 C T XKR6 Silent p.T457T 0.29 TCGA-AD-A5EK-01 8 17830191 17830191 A C PCM1 Missense_Mutation p.N1313T 0.27 tolerated(0.08) benign(0.004) TCGA-AD-A5EK-01 8 24344810 24344810 C T ADAM7 Silent p.C357C 0.24 TCGA-AD-A5EK-01 8 38262000 38262000 G T LETM2 Silent p.P351P 0.30 TCGA-AD-A5EK-01 8 65509218 65509218 C G CYP7B1 Missense_Mutation p.R501T 0.45 deleterious(0) possibly_damaging(0.884) TCGA-AD-A5EK-01 8 87162356 87162356 C G ATP6V0D2 Missense_Mutation p.R219G 0.28 deleterious(0.02) possibly_damaging(0.859) TCGA-AD-A5EK-01 9 119625888 119625888 G A ASTN2 Missense_Mutation p.R621W 0.34 deleterious(0) unknown(0) TCGA-AD-A5EK-01 9 134136686 134136686 G A FAM78A Silent p.S125S 0.24 TCGA-AD-A5EK-01 9 136131247 136131247 C T RP11-430N14.4 5'Flank 0.29 TCGA-AD-A5EK-01 9 136277476 136277476 G A REXO4 Missense_Mutation p.P285S 0.24 deleterious(0.04) benign(0.215) TCGA-AD-A5EK-01 9 140437103 140437103 G A PNPLA7 Silent p.I219I 0.33 TCGA-AD-A5EK-01 9 91606057 91606057 G A C9orf47 Nonsense_Mutation p.W49* 0.65 TCGA-AD-A5EK-01 X 105011054 105011054 C T IL1RAPL2 Silent p.F487F 0.15 TCGA-AD-A5EK-01 X 130407782 130407782 G A IGSF1 Silent p.P1338P 0.46 TCGA-AD-A5EK-01 X 140785682 140785682 G T SPANXD Missense_Mutation p.N78K 0.69 deleterious(0.01) probably_damaging(0.995) TCGA-AD-A5EK-01 X 29414411 29414411 G A IL1RAPL1 Silent p.L133L 0.42 TCGA-AD-A5EK-01 X 49855457 49855457 C T CLCN5 Silent p.F758F 0.87 TCGA-AD-A5EK-01 X 53432291 53432291 C T SMC1A Silent p.K648K 0.41 TCGA-AM-5820-01 10 38344224 38344224 G C ZNF33A Missense_Mutation p.G391A 0.09 tolerated(0.1) possibly_damaging(0.461) TCGA-AM-5820-01 10 43089265 43089265 G A ZNF33B Missense_Mutation p.S378L 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-AM-5820-01 10 64573863 64573863 C T EGR2 Missense_Mutation p.G179R 0.44 deleterious(0) probably_damaging(0.999) TCGA-AM-5820-01 11 14004480 14004480 G C SPON1 RNA 0.36 TCGA-AM-5820-01 11 18382184 18382184 T C GTF2H1 Missense_Mutation p.L497S 0.25 deleterious(0.02) benign(0.185) TCGA-AM-5820-01 11 33308184 33308184 A G HIPK3 Missense_Mutation p.N75S 0.51 tolerated(0.53) benign(0.001) TCGA-AM-5820-01 11 65113482 65113482 C T DPF2 Missense_Mutation p.T286M 0.30 deleterious(0.03) possibly_damaging(0.708) TCGA-AM-5820-01 11 6651257 6651257 C T DCHS1 Missense_Mutation p.G1590S 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-AM-5820-01 11 94917705 94917705 A - SESN3 Frame_Shift_Del p.Q273Kfs*14 0.32 TCGA-AM-5820-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.33 deleterious(0) possibly_damaging(0.479) TCGA-AM-5820-01 12 47471655 47471655 G A AMIGO2 Silent p.D377D 0.40 TCGA-AM-5820-01 12 68720705 68720705 T A MDM1 Missense_Mutation p.E77V 0.35 tolerated(0.08) probably_damaging(0.92) TCGA-AM-5820-01 12 7985319 7985319 G T SLC2A14 Missense_Mutation p.T60K 0.21 tolerated(1) benign(0.003) TCGA-AM-5820-01 12 8086445 8086445 T C SLC2A3 Silent p.Q23Q 0.11 TCGA-AM-5820-01 13 109707405 109707405 G T MYO16 Missense_Mutation p.K998N 0.39 deleterious(0) probably_damaging(0.99) TCGA-AM-5820-01 13 32745404 32745404 A G FRY Silent p.S716S 0.38 TCGA-AM-5820-01 13 95822837 95822837 A C ABCC4 Silent p.T591T 0.28 TCGA-AM-5820-01 14 24877374 24877374 G T NYNRIN Silent p.L166L 0.21 TCGA-AM-5820-01 14 29237209 29237209 G A FOXG1 Missense_Mutation p.V242M 0.48 deleterious(0) probably_damaging(0.991) TCGA-AM-5820-01 14 94517600 94517600 C A DDX24 Missense_Mutation p.K839N 0.27 tolerated(0.2) unknown(0) TCGA-AM-5820-01 16 88503112 88503112 C T ZNF469 Silent p.F3050F 0.36 TCGA-AM-5820-01 16 88747825 88747825 G A SNAI3 Missense_Mutation p.S125F 0.28 deleterious(0.01) possibly_damaging(0.485) TCGA-AM-5820-01 17 15983373 15983373 C T NCOR1 Missense_Mutation p.A1136T 0.63 benign(0) TCGA-AM-5820-01 17 4356423 4356423 G A SPNS3 Missense_Mutation p.A346T 0.61 deleterious(0) probably_damaging(0.981) TCGA-AM-5820-01 17 73728004 73728004 G A ITGB4 Missense_Mutation p.G443S 0.11 tolerated(0.58) probably_damaging(1) TCGA-AM-5820-01 18 43247805 43247805 C T SLC14A2 Silent p.S575S 0.70 TCGA-AM-5820-01 18 48446853 48446853 C T ME2 Silent p.F254F 0.61 TCGA-AM-5820-01 19 13873603 13873603 G A CCDC130 Silent p.P304P 0.27 TCGA-AM-5820-01 19 13988438 13988438 C T NANOS3 Missense_Mutation p.R126C 0.56 deleterious(0) probably_damaging(1) TCGA-AM-5820-01 19 17355881 17355881 G T NR2F6 Missense_Mutation p.P50Q 0.44 tolerated(0.25) possibly_damaging(0.597) TCGA-AM-5820-01 19 17631789 17631789 G A PGLS Missense_Mutation p.A226T 0.33 deleterious(0) probably_damaging(0.972) TCGA-AM-5820-01 19 30936533 30936533 G A ZNF536 Silent p.T688T 0.43 TCGA-AM-5820-01 19 36220899 36220899 C T KMT2B Missense_Mutation p.T1650M 0.34 probably_damaging(0.996) TCGA-AM-5820-01 19 46198876 46198876 C T QPCTL Missense_Mutation p.S178L 0.15 tolerated(0.23) benign(0.004) TCGA-AM-5820-01 19 54848923 54848923 C T LILRA4 Missense_Mutation p.V234M 0.43 tolerated(0.1) benign(0.354) TCGA-AM-5820-01 19 58193596 58193596 T A AC003006.7 Missense_Mutation p.L6Q 0.52 tolerated(0.17) possibly_damaging(0.517) TCGA-AM-5820-01 1 150923196 150923196 C T SETDB1 Missense_Mutation p.R615C 0.33 deleterious(0.05) probably_damaging(1) TCGA-AM-5820-01 1 161654934 161654934 G A RPL31P11 RNA 0.61 TCGA-AM-5820-01 1 176668659 176668659 G A PAPPA2 Missense_Mutation p.R1057H 0.35 deleterious(0) probably_damaging(0.988) TCGA-AM-5820-01 1 179078450 179078450 C T ABL2 Missense_Mutation p.G651D 0.44 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-AM-5820-01 1 247978380 247978380 G A OR14A16 Missense_Mutation p.H218Y 0.25 tolerated(0.63) benign(0.029) TCGA-AM-5820-01 1 26508402 26508402 G A CNKSR1 Silent p.L149L 0.09 TCGA-AM-5820-01 1 26524547 26524547 C A CATSPER4 Silent p.V219V 0.59 TCGA-AM-5820-01 20 10394233 10394234 - CA MKKS 5'UTR 0.47 TCGA-AM-5820-01 20 30584994 30584994 C T XKR7 Missense_Mutation p.R492C 0.44 deleterious(0) possibly_damaging(0.836) TCGA-AM-5820-01 20 35833202 35833202 C T RPN2 Silent p.G196G 0.24 TCGA-AM-5820-01 20 52192334 52192334 T C ZNF217 Missense_Mutation p.Y990C 0.30 deleterious(0.02) possibly_damaging(0.867) TCGA-AM-5820-01 20 60892012 60892012 G A LAMA5 Missense_Mutation p.R2527C 0.31 possibly_damaging(0.872) TCGA-AM-5820-01 20 62187795 62187795 T C C20orf195 Missense_Mutation p.V260A 0.58 tolerated(0.08) benign(0.115) TCGA-AM-5820-01 21 38573942 38573942 G A TTC3 3'UTR 0.41 TCGA-AM-5820-01 21 46876477 46876477 G A COL18A1 Intron 0.45 TCGA-AM-5820-01 22 29091764 29091764 G C CHEK2 Missense_Mutation p.S441C 0.34 deleterious(0) probably_damaging(0.95) TCGA-AM-5820-01 2 141777660 141777660 C A LRP1B Missense_Mutation p.V601L 0.08 benign(0.299) TCGA-AM-5820-01 2 143913139 143913139 G C ARHGAP15 Missense_Mutation p.R27T 0.35 deleterious(0) probably_damaging(0.999) TCGA-AM-5820-01 2 152236005 152236005 T A TNFAIP6 Silent p.T264T 0.36 TCGA-AM-5820-01 2 170804118 170804118 A T UBR3 Missense_Mutation p.M993L 0.29 tolerated(1) benign(0) TCGA-AM-5820-01 2 179466466 179466466 G A TTN Nonsense_Mutation p.R18451* 0.40 TCGA-AM-5820-01 2 183860556 183860556 T C NCKAP1 Missense_Mutation p.D211G 0.12 tolerated(0.36) benign(0.002) TCGA-AM-5820-01 2 201355109 201355109 G A KCTD18 Missense_Mutation p.T332M 0.46 deleterious_low_confidence(0.05) benign(0.079) TCGA-AM-5820-01 3 114070006 114070006 C T ZBTB20 Missense_Mutation p.E307K 0.11 deleterious(0.02) possibly_damaging(0.905) TCGA-AM-5820-01 3 122631758 122631758 C T SEMA5B Missense_Mutation p.R940H 0.30 deleterious(0.03) probably_damaging(0.961) TCGA-AM-5820-01 3 153840375 153840375 C T ARHGEF26 Silent p.P198P 0.49 TCGA-AM-5820-01 3 38616870 38616870 C T SCN5A Missense_Mutation p.R1195H 0.38 deleterious(0) probably_damaging(0.948) TCGA-AM-5820-01 3 48694333 48694333 G A CELSR3 Silent p.S1399S 0.66 TCGA-AM-5820-01 3 78719328 78719328 C A ROBO1 Missense_Mutation p.R489I 0.39 tolerated(0.06) probably_damaging(0.995) TCGA-AM-5820-01 4 110790957 110790957 C T LRIT3 Missense_Mutation p.T351I 0.40 deleterious(0) possibly_damaging(0.79) TCGA-AM-5820-01 4 81188057 81188057 G T FGF5 Missense_Mutation p.A27S 0.29 tolerated_low_confidence(0.19) benign(0.233) TCGA-AM-5820-01 5 11364898 11364898 C T CTNND2 Missense_Mutation p.V428I 0.36 deleterious(0.01) benign(0.156) TCGA-AM-5820-01 5 115152019 115152019 C T CDO1 Missense_Mutation p.D26N 0.42 tolerated(0.21) benign(0.004) TCGA-AM-5820-01 5 140182150 140182150 G A PCDHA3 Silent p.S456S 0.43 TCGA-AM-5820-01 5 167674866 167674866 C T TENM2 Missense_Mutation p.R2308W 0.43 deleterious(0) probably_damaging(1) TCGA-AM-5820-01 5 179071859 179071859 G A C5orf60 Missense_Mutation p.R55C 0.36 tolerated(0.09) benign(0.439) TCGA-AM-5820-01 5 180166695 180166695 G A OR2Y1 Missense_Mutation p.R122C 0.39 deleterious(0.02) benign(0.308) TCGA-AM-5820-01 5 19571871 19571871 C T CDH18 Missense_Mutation p.R357H 0.40 deleterious(0.05) probably_damaging(0.999) TCGA-AM-5820-01 5 23524525 23524525 C T PRDM9 Nonsense_Mutation p.R345* 0.39 TCGA-AM-5820-01 6 129802447 129802447 G C LAMA2 Missense_Mutation p.E2538Q 0.64 tolerated(0.11) probably_damaging(0.999) TCGA-AM-5820-01 6 13659015 13659015 G A RANBP9 Missense_Mutation p.P245S 0.26 deleterious(0) possibly_damaging(0.687) TCGA-AM-5820-01 6 149846320 149846320 T C PPIL4 Missense_Mutation p.T277A 0.12 deleterious(0) possibly_damaging(0.868) TCGA-AM-5820-01 6 168316099 168316099 A G MLLT4 Missense_Mutation p.S844G 0.10 tolerated(0.34) benign(0.044) TCGA-AM-5820-01 6 24448385 24448385 G A GPLD1 Missense_Mutation p.P500S 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-AM-5820-01 6 38810444 38810444 G A DNAH8 Missense_Mutation p.R1320H 0.31 benign(0.344) TCGA-AM-5820-01 6 43533454 43533454 T C XPO5 Missense_Mutation p.K285R 0.10 tolerated(0.06) possibly_damaging(0.653) TCGA-AM-5820-01 6 79918264 79918264 C T HMGN3 Silent p.A32A 0.59 TCGA-AM-5820-01 7 100681846 100681846 C T MUC17 Silent p.D2383D 0.26 TCGA-AM-5820-01 7 121623809 121623809 C A PTPRZ1 Missense_Mutation p.S237Y 0.46 deleterious(0) probably_damaging(1) TCGA-AM-5820-01 7 150644015 150644015 G T KCNH2 Missense_Mutation p.L1094M 0.11 tolerated(0.08) benign(0.193) TCGA-AM-5820-01 7 4119147 4119147 C T SDK1 Silent p.S1085S 0.32 TCGA-AM-5820-01 7 54612379 54612379 C T VSTM2A Silent p.C48C 0.35 TCGA-AM-5820-01 7 7420478 7420478 G A COL28A1 Missense_Mutation p.R741W 0.55 deleterious(0.04) possibly_damaging(0.773) TCGA-AM-5820-01 7 93516175 93516175 C T TFPI2 Missense_Mutation p.R222H 0.29 tolerated(0.39) benign(0.05) TCGA-AM-5820-01 8 143623672 143623672 C A BAI1 Silent p.P1359P 0.38 TCGA-AM-5820-01 8 3015433 3015433 G A CSMD1 Missense_Mutation p.S1967F 0.46 possibly_damaging(0.891) TCGA-AM-5820-01 8 37602185 37602185 C T ERLIN2 Missense_Mutation p.T132M 0.59 deleterious(0) possibly_damaging(0.877) TCGA-AM-5820-01 8 52233382 52233382 G A PXDNL Missense_Mutation p.R1408C 0.38 tolerated(0.05) benign(0.022) TCGA-AM-5820-01 9 100054918 100054918 G A CCDC180 Intron 0.39 TCGA-AM-5820-01 9 139818359 139818359 C T TRAF2 Silent p.G398G 0.36 TCGA-AM-5820-01 9 139818422 139818422 C T TRAF2 Silent p.D419D 0.43 TCGA-AM-5820-01 9 34514421 34514421 C T DNAI1 Silent p.L533L 0.42 TCGA-AM-5820-01 9 79634582 79634582 G A FOXB2 Silent p.P4P 0.31 TCGA-AM-5820-01 X 12735116 12735116 C T FRMPD4 Silent p.P846P 0.45 TCGA-AM-5820-01 X 12904491 12904491 G A TLR7 Silent p.A288A 0.39 TCGA-AM-5820-01 X 142596891 142596891 C A SPANXN3 Missense_Mutation p.G60V 0.34 tolerated(0.64) benign(0.025) TCGA-AM-5820-01 X 48399786 48399786 C T TBC1D25 Silent p.L63L 0.37 TCGA-AM-5820-01 X 70367959 70367959 G A NLGN3 Silent p.P120P 0.46 TCGA-AM-5821-01 10 100015473 100015473 C T LOXL4 Silent p.T484T 0.28 TCGA-AM-5821-01 10 101556999 101556999 C T ABCC2 Missense_Mutation p.R260W 0.12 tolerated(0.1) benign(0.022) TCGA-AM-5821-01 10 101715292 101715292 G T DNMBP Missense_Mutation p.L647M 0.34 deleterious(0.02) probably_damaging(0.982) TCGA-AM-5821-01 10 102051098 102051098 T G PKD2L1 Missense_Mutation p.K656T 0.22 tolerated(0.25) benign(0.142) TCGA-AM-5821-01 10 102510473 102510473 A G PAX2 Missense_Mutation p.K79E 0.19 deleterious(0) probably_damaging(0.978) TCGA-AM-5821-01 10 102850144 102850144 G - TLX1NB 5'UTR 0.35 TCGA-AM-5821-01 10 104183229 104183229 G A CUEDC2 Missense_Mutation p.A273V 0.33 deleterious(0.02) benign(0.021) TCGA-AM-5821-01 10 108458994 108458994 T A SORCS1 Missense_Mutation p.N464I 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-AM-5821-01 10 112257970 112257970 T C DUSP5 Missense_Mutation p.Y31H 0.27 deleterious(0) probably_damaging(0.984) TCGA-AM-5821-01 10 1142214 1142214 T C WDR37 Intron 0.20 TCGA-AM-5821-01 10 115481532 115481532 A T CASP7 Nonsense_Mutation p.K157* 0.47 TCGA-AM-5821-01 10 116606090 116606090 T C FAM160B1 Silent p.H454H 0.16 TCGA-AM-5821-01 10 118896029 118896029 C T VAX1 Missense_Mutation p.R128H 0.40 deleterious(0.01) unknown(0) TCGA-AM-5821-01 10 119001290 119001290 C T SLC18A2 Missense_Mutation p.A29V 0.09 deleterious(0.01) probably_damaging(1) TCGA-AM-5821-01 10 119805617 119805617 G A RAB11FIP2 Missense_Mutation p.L20F 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-AM-5821-01 10 12071011 12071011 T - UPF2 Frame_Shift_Del p.N293Ifs*15 0.25 TCGA-AM-5821-01 10 123243303 123243303 C A FGFR2 Missense_Mutation p.R738M 0.53 deleterious(0) possibly_damaging(0.772) TCGA-AM-5821-01 10 123243304 123243304 T C FGFR2 Missense_Mutation p.R738G 0.53 deleterious(0) benign(0.285) TCGA-AM-5821-01 10 124597000 124597000 C T CUZD1 Silent p.P173P 0.19 TCGA-AM-5821-01 10 124697418 124697418 G T C10orf88 Silent p.S302S 0.26 TCGA-AM-5821-01 10 125539748 125539748 G A CPXM2 Missense_Mutation p.R305W 0.28 deleterious(0) probably_damaging(0.939) TCGA-AM-5821-01 10 128150014 128150014 A G C10orf90 Missense_Mutation p.C559R 0.32 tolerated(0.32) benign(0.001) TCGA-AM-5821-01 10 13344024 13344024 T - PHYH 5'Flank 0.27 TCGA-AM-5821-01 10 133958649 133958649 G T JAKMIP3 Missense_Mutation p.Q547H 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-AM-5821-01 10 134503931 134503931 A - INPP5A Frame_Shift_Del p.N116Tfs*25 0.17 TCGA-AM-5821-01 10 135053794 135053794 C T VENTX Missense_Mutation p.T254M 0.29 tolerated_low_confidence(0.08) benign(0.092) TCGA-AM-5821-01 10 135209682 135209682 C T RP11-108K14.8 Missense_Mutation p.R70C 0.25 deleterious(0.01) benign(0.41) TCGA-AM-5821-01 10 135438709 135438709 G A FRG2B Missense_Mutation p.A244V 0.10 deleterious(0.01) benign(0.364) TCGA-AM-5821-01 10 13838541 13838541 T C FRMD4A Missense_Mutation p.D85G 0.38 deleterious(0.01) benign(0.419) TCGA-AM-5821-01 10 14563242 14563242 T C FAM107B Missense_Mutation p.K290E 0.08 deleterious(0) probably_damaging(0.994) TCGA-AM-5821-01 10 15107665 15107665 C - OLAH Frame_Shift_Del p.K217Sfs*10 0.15 TCGA-AM-5821-01 10 15658511 15658511 A C ITGA8 Splice_Site p.X482_splice 0.14 TCGA-AM-5821-01 10 18823077 18823077 A G CACNB2 Missense_Mutation p.D376G 0.14 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 10 23287197 23287197 C T ARMC3 Silent p.R432R 0.26 TCGA-AM-5821-01 10 26849122 26849122 G A APBB1IP Missense_Mutation p.R415Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 10 298310 298310 C T ZMYND11 Missense_Mutation p.A570V 0.11 deleterious(0) benign(0.029) TCGA-AM-5821-01 10 3162162 3162162 G A PFKP Missense_Mutation p.A537T 0.14 deleterious(0) benign(0.216) TCGA-AM-5821-01 10 32304451 32304451 A G KIF5B 3'UTR 0.09 TCGA-AM-5821-01 10 323381 323381 C T DIP2C Missense_Mutation p.V1519M 0.31 deleterious(0.01) possibly_damaging(0.888) TCGA-AM-5821-01 10 34420475 34420475 C T PARD3 Silent p.Q1155Q 0.18 TCGA-AM-5821-01 10 43650826 43650826 C T CSGALNACT2 Missense_Mutation p.R77C 0.29 deleterious(0) probably_damaging(0.959) TCGA-AM-5821-01 10 48414037 48414037 G A GDF2 Silent p.S277S 0.32 TCGA-AM-5821-01 10 49982646 49982646 C - WDFY4 Frame_Shift_Del p.L901Sfs*22 0.16 TCGA-AM-5821-01 10 50121755 50121755 A G LRRC18 Missense_Mutation p.V149A 0.08 deleterious(0) benign(0.098) TCGA-AM-5821-01 10 50531524 50531524 C T C10orf71 Silent p.L312L 0.14 TCGA-AM-5821-01 10 50955199 50955199 A G OGDHL Missense_Mutation p.V348A 0.31 tolerated(0.87) benign(0.003) TCGA-AM-5821-01 10 51769434 51769434 C T AGAP6 Nonsense_Mutation p.R517* 0.34 TCGA-AM-5821-01 10 51889689 51889689 C A FAM21A Missense_Mutation p.P1200T 0.61 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 10 61412384 61412384 A T SLC16A9 3'UTR 0.27 TCGA-AM-5821-01 10 64565689 64565689 C T ADO 3'UTR 0.17 TCGA-AM-5821-01 10 68688167 68688167 C T LRRTM3 Missense_Mutation p.T498M 0.29 deleterious(0.03) possibly_damaging(0.886) TCGA-AM-5821-01 10 69881811 69881811 C T MYPN Nonsense_Mutation p.R206* 0.32 TCGA-AM-5821-01 10 70644062 70644062 G A STOX1 Silent p.T170T 0.15 TCGA-AM-5821-01 10 73046614 73046614 G A UNC5B Missense_Mutation p.V241I 0.34 tolerated(0.2) benign(0.03) TCGA-AM-5821-01 10 73464820 73464820 G T CDH23 Missense_Mutation p.Q554H 0.09 tolerated(0.47) benign(0.02) TCGA-AM-5821-01 10 74885044 74885044 C T NUDT13 Intron 0.10 TCGA-AM-5821-01 10 81697824 81697824 G A SFTPD Silent p.V304V 0.36 TCGA-AM-5821-01 10 87406928 87406928 T C GRID1 Intron 0.30 TCGA-AM-5821-01 10 89621735 89621735 G A KLLN Silent p.C170C 0.27 TCGA-AM-5821-01 10 94223655 94223655 G A IDE Missense_Mutation p.A865V 0.28 tolerated(0.24) possibly_damaging(0.729) TCGA-AM-5821-01 10 95123755 95123755 C - MYOF Frame_Shift_Del p.G944Afs*24 0.38 TCGA-AM-5821-01 10 97023645 97023645 C T PDLIM1 Missense_Mutation p.S170N 0.29 tolerated(0.5) benign(0.001) TCGA-AM-5821-01 10 97453593 97453593 G A TCTN3 Missense_Mutation p.P22S 0.31 tolerated_low_confidence(0.17) benign(0.014) TCGA-AM-5821-01 10 98742370 98742370 T C C10orf12 Missense_Mutation p.M408T 0.25 tolerated(0.72) benign(0.002) TCGA-AM-5821-01 10 98761033 98761033 G A SLIT1 Missense_Mutation p.R1481C 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AM-5821-01 10 99190832 99190832 A G PGAM1 Missense_Mutation p.K179E 0.16 tolerated(0.06) benign(0.053) TCGA-AM-5821-01 11 105929626 105929626 G A KBTBD3 Missense_Mutation p.R67C 0.30 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 11 107506430 107506430 A - ELMOD1 Frame_Shift_Del p.K121Nfs*19 0.28 TCGA-AM-5821-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 11 108164164 108164164 A - ATM Frame_Shift_Del p.I1581Sfs*20 0.19 TCGA-AM-5821-01 11 108196900 108196900 C T ATM Missense_Mutation p.A2308V 0.11 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 11 112064414 112064414 G A BCO2 Missense_Mutation p.A171T 0.13 tolerated(0.58) benign(0.006) TCGA-AM-5821-01 11 113628486 113628486 T C ZW10 Missense_Mutation p.I275V 0.15 tolerated(0.28) benign(0.002) TCGA-AM-5821-01 11 117049945 117049945 G A SIDT2 5'UTR 0.26 TCGA-AM-5821-01 11 117302387 117302387 C T DSCAML1 Missense_Mutation p.S1806N 0.29 deleterious(0) probably_damaging(0.944) TCGA-AM-5821-01 11 118960755 118960755 C A HMBS Missense_Mutation p.L134I 0.33 tolerated(0.24) possibly_damaging(0.85) TCGA-AM-5821-01 11 119020763 119020763 C - ABCG4 Frame_Shift_Del p.P31Lfs*3 0.17 TCGA-AM-5821-01 11 119056602 119056604 CTC - PDZD3 Intron 0.46 TCGA-AM-5821-01 11 119155690 119155690 G A CBL Silent p.P481P 0.15 TCGA-AM-5821-01 11 119215690 119215690 G - MFRP Frame_Shift_Del p.T223Rfs*83 0.22 TCGA-AM-5821-01 11 120200910 120200910 A C TMEM136 Missense_Mutation p.M164L 0.11 tolerated(0.88) benign(0) TCGA-AM-5821-01 11 121986752 121986753 - A BLID 5'UTR 0.18 TCGA-AM-5821-01 11 123464862 123464862 C T GRAMD1B Missense_Mutation p.R110C 0.09 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 11 123886664 123886664 C T OR10G4 Missense_Mutation p.P128L 0.09 deleterious(0.01) benign(0.069) TCGA-AM-5821-01 11 123894102 123894102 C T OR10G9 Missense_Mutation p.P128L 0.23 deleterious(0.01) benign(0.069) TCGA-AM-5821-01 11 123909348 123909348 G T OR10G7 Missense_Mutation p.R121S 0.30 deleterious(0) possibly_damaging(0.635) TCGA-AM-5821-01 11 123989023 123989023 T C VWA5A Missense_Mutation p.V125A 0.17 deleterious(0) possibly_damaging(0.755) TCGA-AM-5821-01 11 124135157 124135158 AG - OR8G5 Frame_Shift_Del p.E146Vfs*10 0.17 TCGA-AM-5821-01 11 124189343 124189343 A G OR8D2 Missense_Mutation p.F251L 0.14 deleterious(0.03) probably_damaging(0.992) TCGA-AM-5821-01 11 124440401 124440401 C T OR8A1 Missense_Mutation p.P146L 0.14 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 11 124495762 124495763 - A TBRG1 Frame_Shift_Ins p.E142Rfs*53 0.25 TCGA-AM-5821-01 11 124933193 124933193 T C SLC37A2 5'Flank 0.21 TCGA-AM-5821-01 11 125325975 125325975 A G FEZ1 Missense_Mutation p.L232P 0.38 deleterious(0) probably_damaging(0.977) TCGA-AM-5821-01 11 126215452 126215452 G A DCPS Missense_Mutation p.A320T 0.18 tolerated(0.33) benign(0) TCGA-AM-5821-01 11 1263452 1263452 C T MUC5B Missense_Mutation p.T1781M 0.34 unknown(0) TCGA-AM-5821-01 11 129814800 129814800 G - PRDM10 Frame_Shift_Del p.L210Wfs*5 0.16 TCGA-AM-5821-01 11 130339265 130339265 G A ADAMTS15 Missense_Mutation p.G551R 0.45 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 11 133794770 133794770 G A IGSF9B Silent p.A688A 0.14 TCGA-AM-5821-01 11 134244962 134244962 C - GLB1L2 3'UTR 0.12 TCGA-AM-5821-01 11 17522604 17522604 G A USH1C Missense_Mutation p.R792W 0.26 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-AM-5821-01 11 17538967 17538967 G A USH1C Intron 0.45 TCGA-AM-5821-01 11 18579822 18579822 G A UEVLD Missense_Mutation p.T223M 0.18 tolerated(0.83) benign(0.226) TCGA-AM-5821-01 11 18750514 18750514 G A PTPN5 Silent p.Y555Y 0.30 TCGA-AM-5821-01 11 1902785 1902786 - C LSP1 Frame_Shift_Ins p.Q236Pfs*6 0.25 TCGA-AM-5821-01 11 20622938 20622938 G A SLC6A5 Silent p.A89A 0.50 TCGA-AM-5821-01 11 21250933 21250933 C A NELL1 Silent p.T494T 0.26 TCGA-AM-5821-01 11 2187274 2187274 C T TH Silent p.A385A 0.11 TCGA-AM-5821-01 11 27681155 27681155 T G BDNF Intron 0.13 TCGA-AM-5821-01 11 28318351 28318351 G T METTL15 Missense_Mutation p.Q217H 0.26 deleterious(0.01) benign(0.033) TCGA-AM-5821-01 11 31653835 31653835 C T ELP4 Silent p.C270C 0.12 TCGA-AM-5821-01 11 34107698 34107698 C G CAPRIN1 Missense_Mutation p.P352A 0.30 deleterious(0.01) probably_damaging(0.938) TCGA-AM-5821-01 11 36598366 36598366 T - RAG1 3'UTR 0.46 TCGA-AM-5821-01 11 397555 397555 C A PKP3 Missense_Mutation p.L321M 0.41 tolerated(0.76) possibly_damaging(0.46) TCGA-AM-5821-01 11 44296905 44296905 C T ALX4 Missense_Mutation p.R257H 0.11 deleterious(0) probably_damaging(0.995) TCGA-AM-5821-01 11 46515674 46515674 C A AMBRA1 Missense_Mutation p.R717M 0.42 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-AM-5821-01 11 4661451 4661451 G A OR51D1 Missense_Mutation p.R144H 0.10 tolerated(0.31) benign(0.007) TCGA-AM-5821-01 11 46774978 46774978 T C CKAP5 Missense_Mutation p.I1647V 0.31 tolerated(0.06) benign(0.245) TCGA-AM-5821-01 11 46895081 46895081 G A LRP4 Silent p.D1431D 0.32 TCGA-AM-5821-01 11 47290212 47290212 C T NR1H3 Missense_Mutation p.P437S 0.16 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 11 48510378 48510378 C T OR4A47 Missense_Mutation p.L12F 0.30 tolerated_low_confidence(0.05) benign(0.077) TCGA-AM-5821-01 11 49176021 49176021 A G FOLH1 Silent p.Y549Y 0.21 TCGA-AM-5821-01 11 5020266 5020266 T G OR51L1 Silent p.G18G 0.14 TCGA-AM-5821-01 11 533280 533280 G A HRAS Intron 0.22 TCGA-AM-5821-01 11 55540966 55540966 G A OR5D13 Missense_Mutation p.G18D 0.26 deleterious(0) possibly_damaging(0.809) TCGA-AM-5821-01 11 55587441 55587441 A C OR5D18 Missense_Mutation p.E112D 0.19 deleterious(0.03) possibly_damaging(0.549) TCGA-AM-5821-01 11 55587588 55587588 G A OR5D18 Silent p.T161T 0.31 TCGA-AM-5821-01 11 55653151 55653151 C T TRIM51 Missense_Mutation p.R83W 0.31 tolerated(0.9) benign(0.005) TCGA-AM-5821-01 11 55872840 55872840 G T OR8H2 Missense_Mutation p.G108C 0.28 deleterious(0.04) benign(0.043) TCGA-AM-5821-01 11 56127975 56127975 T - OR8J1 Frame_Shift_Del p.L86* 0.27 TCGA-AM-5821-01 11 57314012 57314012 T C SMTNL1 Silent p.S427S 0.14 TCGA-AM-5821-01 11 5776531 5776532 - A OR52N4 Frame_Shift_Ins p.L189Ifs*5 0.25 TCGA-AM-5821-01 11 5798972 5798972 T A OR52N5 Missense_Mutation p.N298I 0.29 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 11 57995990 57995990 C T OR10Q1 Missense_Mutation p.A120T 0.16 deleterious(0.03) benign(0.164) TCGA-AM-5821-01 11 58892819 58892819 C A FAM111B Silent p.R417R 0.23 TCGA-AM-5821-01 11 60150627 60150627 T C MS4A7 Missense_Mutation p.S5P 0.15 tolerated(0.33) benign(0.001) TCGA-AM-5821-01 11 60704389 60704389 G A TMEM132A 3'UTR 0.20 TCGA-AM-5821-01 11 614797 614797 C T IRF7 Missense_Mutation p.E145K 0.33 tolerated(0.58) possibly_damaging(0.849) TCGA-AM-5821-01 11 61508806 61508806 G A DAGLA Missense_Mutation p.R719H 0.12 deleterious_low_confidence(0.02) benign(0.29) TCGA-AM-5821-01 11 61537756 61537756 T C MYRF Missense_Mutation p.C167R 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-AM-5821-01 11 61539394 61539394 C T MYRF Missense_Mutation p.A362V 0.30 tolerated(0.26) benign(0.132) TCGA-AM-5821-01 11 61541622 61541622 G A MYRF Silent p.L433L 0.50 TCGA-AM-5821-01 11 62292030 62292030 G A AHNAK Missense_Mutation p.H3287Y 0.11 benign(0.291) TCGA-AM-5821-01 11 62348902 62348902 A T TUT1 Missense_Mutation p.L220Q 0.14 deleterious(0) probably_damaging(0.99) TCGA-AM-5821-01 11 62376947 62376947 C A EML3 Missense_Mutation p.G213C 0.09 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 11 6244363 6244363 G A FAM160A2 Missense_Mutation p.P295S 0.38 tolerated(0.33) benign(0.032) TCGA-AM-5821-01 11 62444228 62444228 G A UBXN1 Silent p.L301L 0.13 TCGA-AM-5821-01 11 62748524 62748524 C A SLC22A6 Missense_Mutation p.A324S 0.09 tolerated(0.3) benign(0.297) TCGA-AM-5821-01 11 63764526 63764526 T C OTUB1 Missense_Mutation p.M143T 0.39 deleterious(0) possibly_damaging(0.713) TCGA-AM-5821-01 11 64029923 64029923 C T PLCB3 Missense_Mutation p.R695C 0.26 deleterious(0) probably_damaging(0.951) TCGA-AM-5821-01 11 64030200 64030200 C T PLCB3 Missense_Mutation p.R759W 0.21 deleterious(0) probably_damaging(0.929) TCGA-AM-5821-01 11 64504426 64504426 G T RASGRP2 Silent p.G298G 0.14 TCGA-AM-5821-01 11 64605611 64605611 G A CDC42BPG Silent p.H383H 0.20 TCGA-AM-5821-01 11 64802352 64802352 G A SNX15 Missense_Mutation p.R97Q 0.12 deleterious(0) possibly_damaging(0.477) TCGA-AM-5821-01 11 64812906 64812906 G - NAALADL1 Frame_Shift_Del p.T687Rfs*4 0.18 TCGA-AM-5821-01 11 65338205 65338205 C A SSSCA1 Silent p.G50G 0.12 TCGA-AM-5821-01 11 6559701 6559701 C T DNHD1 Silent p.S1029S 0.32 TCGA-AM-5821-01 11 66191992 66191992 G A NPAS4 Missense_Mutation p.S544N 0.13 tolerated(0.25) possibly_damaging(0.679) TCGA-AM-5821-01 11 66458907 66458907 G A SPTBN2 Missense_Mutation p.R1805C 0.41 deleterious(0) possibly_damaging(0.812) TCGA-AM-5821-01 11 66626542 66626542 G A LRFN4 Missense_Mutation p.E443K 0.38 tolerated(0.8) possibly_damaging(0.49) TCGA-AM-5821-01 11 67187257 67187257 G A CARNS1 Missense_Mutation p.R354Q 0.14 deleterious(0) probably_damaging(0.954) TCGA-AM-5821-01 11 67208620 67208620 C T CORO1B Silent p.E244E 0.15 TCGA-AM-5821-01 11 67259551 67259551 G A PITPNM1 Missense_Mutation p.R1230W 0.22 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-AM-5821-01 11 68153929 68153929 C A LRP5 Silent p.V387V 0.20 TCGA-AM-5821-01 11 7021462 7021462 C A ZNF214 Missense_Mutation p.K484N 0.29 tolerated(1) possibly_damaging(0.549) TCGA-AM-5821-01 11 71948675 71948675 G A INPPL1 Silent p.T1129T 0.10 TCGA-AM-5821-01 11 72326140 72326140 A G PDE2A Intron 0.20 TCGA-AM-5821-01 11 73689392 73689392 G - UCP2 Frame_Shift_Del p.P11Lfs*5 0.24 TCGA-AM-5821-01 11 75136452 75136452 C T KLHL35 Missense_Mutation p.V454I 0.38 tolerated(0.44) unknown(0) TCGA-AM-5821-01 11 75148088 75148088 C T GDPD5 Missense_Mutation p.R521H 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-AM-5821-01 11 77409617 77409617 T A RSF1 Missense_Mutation p.E877V 0.28 deleterious(0.02) probably_damaging(0.98) TCGA-AM-5821-01 11 77911779 77911779 G A USP35 Silent p.A374A 0.25 TCGA-AM-5821-01 11 84027991 84027991 C - DLG2 Intron 0.34 TCGA-AM-5821-01 11 89028386 89028386 C T TYR Missense_Mutation p.A481V 0.16 tolerated(0.1) probably_damaging(0.919) TCGA-AM-5821-01 11 94134041 94134041 T C GPR83 Missense_Mutation p.T125A 0.14 deleterious(0.03) possibly_damaging(0.836) TCGA-AM-5821-01 11 95656930 95656930 C T MTMR2 Intron 0.29 TCGA-AM-5821-01 11 96117385 96117385 T C CCDC82 Missense_Mutation p.D176G 0.30 tolerated(0.61) benign(0.034) TCGA-AM-5821-01 11 96125440 96125440 C T JRKL 3'UTR 0.12 TCGA-AM-5821-01 12 10124251 10124251 A - CLEC12A Frame_Shift_Del p.I31Sfs*26 0.10 TCGA-AM-5821-01 12 101603614 101603614 G A SLC5A8 Missense_Mutation p.R5W 0.41 deleterious(0.01) possibly_damaging(0.634) TCGA-AM-5821-01 12 108932766 108932766 C T SART3 Missense_Mutation p.A336T 0.10 deleterious(0.05) benign(0.191) TCGA-AM-5821-01 12 109230701 109230701 T C SSH1 Intron 0.13 TCGA-AM-5821-01 12 111085688 111085688 G A TCTN1 Silent p.P590P 0.12 TCGA-AM-5821-01 12 112171802 112171802 C T ACAD10 Silent p.G521G 0.08 TCGA-AM-5821-01 12 112924287 112924287 G A PTPN11 Silent p.T411T 0.33 TCGA-AM-5821-01 12 113873144 113873144 G A SDSL Missense_Mutation p.A152T 0.12 tolerated(0.36) benign(0.369) TCGA-AM-5821-01 12 116972625 116972625 C T LINC00173 RNA 0.10 TCGA-AM-5821-01 12 119554806 119554806 C T SRRM4 Nonsense_Mutation p.R144* 0.38 TCGA-AM-5821-01 12 12037511 12037511 G A ETV6 Missense_Mutation p.G381E 0.53 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 12 120502584 120502584 C T CCDC64 Silent p.S270S 0.27 TCGA-AM-5821-01 12 120591163 120591163 C T GCN1L1 Missense_Mutation p.A1306T 0.50 probably_damaging(0.935) TCGA-AM-5821-01 12 120595690 120595690 C A GCN1L1 Missense_Mutation p.R1017M 0.29 probably_damaging(0.997) TCGA-AM-5821-01 12 121659753 121659753 T C P2RX4 Missense_Mutation p.L123P 0.50 deleterious(0.03) possibly_damaging(0.633) TCGA-AM-5821-01 12 122724476 122724476 A - VPS33A Frame_Shift_Del p.F371Lfs*4 0.15 TCGA-AM-5821-01 12 123032079 123032079 T C KNTC1 Splice_Site p.X311_splice 0.12 TCGA-AM-5821-01 12 123433200 123433200 C T ABCB9 Missense_Mutation p.V342M 0.48 deleterious(0.02) benign(0.283) TCGA-AM-5821-01 12 123466390 123466390 T C ARL6IP4 Missense_Mutation p.W268R 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AM-5821-01 12 123661315 123661315 A C MPHOSPH9 Silent p.A640A 0.13 TCGA-AM-5821-01 12 123749820 123749820 G A CDK2AP1 Missense_Mutation p.A68V 0.12 deleterious(0.02) possibly_damaging(0.88) TCGA-AM-5821-01 12 124839385 124839385 A G NCOR2 Missense_Mutation p.L1161P 0.16 possibly_damaging(0.908) TCGA-AM-5821-01 12 125263062 125263062 G T SCARB1 3'UTR 0.55 TCGA-AM-5821-01 12 12814181 12814181 T - GPR19 Frame_Shift_Del p.K401Sfs*28 0.15 TCGA-AM-5821-01 12 129558689 129558689 T - TMEM132D Frame_Shift_Del p.S1011Afs*35 0.34 TCGA-AM-5821-01 12 130184705 130184705 G - TMEM132D Frame_Shift_Del p.T207Rfs*75 0.29 TCGA-AM-5821-01 12 132588983 132588983 C T EP400NL Intron 0.06 TCGA-AM-5821-01 12 132688209 132688209 C A GALNT9 Missense_Mutation p.E2D 0.18 deleterious(0) benign(0.297) TCGA-AM-5821-01 12 133398704 133398704 G A GOLGA3 Missense_Mutation p.A4V 0.23 tolerated_low_confidence(0.25) benign(0.003) TCGA-AM-5821-01 12 133419635 133419635 G A CHFR Silent p.G638G 0.12 TCGA-AM-5821-01 12 133780354 133780354 A C ZNF268 Missense_Mutation p.K694N 0.15 deleterious(0) probably_damaging(0.987) TCGA-AM-5821-01 12 18800923 18800923 T C PIK3C2G Silent p.D1433D 0.11 TCGA-AM-5821-01 12 2058282 2058282 C T DCP1B Silent p.Q581Q 0.19 TCGA-AM-5821-01 12 21958125 21958125 C T ABCC9 Intron 0.53 TCGA-AM-5821-01 12 25302675 25302675 T G CASC1 Missense_Mutation p.T158P 0.14 deleterious(0.01) probably_damaging(0.956) TCGA-AM-5821-01 12 26709180 26709180 G A ITPR2 Silent p.G1650G 0.47 TCGA-AM-5821-01 12 26869141 26869141 A G ITPR2 Missense_Mutation p.V187A 0.17 deleterious(0.02) probably_damaging(0.968) TCGA-AM-5821-01 12 27058375 27058375 A G ASUN 3'UTR 0.23 TCGA-AM-5821-01 12 31585981 31585981 T - DENND5B Intron 0.56 TCGA-AM-5821-01 12 33030999 33030999 C A PKP2 Missense_Mutation p.R272M 0.34 deleterious(0) probably_damaging(0.928) TCGA-AM-5821-01 12 33592504 33592504 T - SYT10 5'UTR 0.13 TCGA-AM-5821-01 12 40697778 40697778 G A LRRK2 Missense_Mutation p.D1207N 0.21 tolerated(0.44) benign(0) TCGA-AM-5821-01 12 40702296 40702296 T G LRRK2 Silent p.A1329A 0.40 TCGA-AM-5821-01 12 40940940 40940940 C A MUC19 3'UTR 0.20 TCGA-AM-5821-01 12 40962836 40962836 G T MUC19 3'UTR 0.49 TCGA-AM-5821-01 12 42835169 42835169 A - PPHLN1 Frame_Shift_Del p.D323Ifs*4 0.16 TCGA-AM-5821-01 12 432829 432829 C T KDM5A Missense_Mutation p.R696Q 0.50 tolerated(0.66) benign(0.03) TCGA-AM-5821-01 12 44162037 44162037 A C IRAK4 Missense_Mutation p.K41N 0.11 tolerated(0.09) benign(0.049) TCGA-AM-5821-01 12 44194246 44194246 T C TWF1 Missense_Mutation p.T124A 0.06 deleterious(0) possibly_damaging(0.674) TCGA-AM-5821-01 12 45410035 45410035 G A DBX2 3'UTR 0.49 TCGA-AM-5821-01 12 45784266 45784266 T C ANO6 Silent p.S478S 0.13 TCGA-AM-5821-01 12 4627957 4627957 C T C12orf4 Missense_Mutation p.S273N 0.13 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 12 48372525 48372525 G - COL2A1 Frame_Shift_Del p.P917Lfs*111 0.12 TCGA-AM-5821-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.11 TCGA-AM-5821-01 12 49435199 49435199 G - KMT2D Frame_Shift_Del p.A2119Lfs*25 0.24 TCGA-AM-5821-01 12 49442971 49442971 G A KMT2D Missense_Mutation p.R1313W 0.26 probably_damaging(0.997) TCGA-AM-5821-01 12 49994363 49994363 T C FAM186B Missense_Mutation p.M354V 0.36 tolerated(0.49) benign(0.004) TCGA-AM-5821-01 12 50045797 50045797 G T FMNL3 Missense_Mutation p.P508T 0.52 tolerated(0.33) benign(0.049) TCGA-AM-5821-01 12 50528446 50528446 G A CERS5 Silent p.I304I 0.07 TCGA-AM-5821-01 12 51470252 51470252 G A CSRNP2 Silent p.S31S 0.59 TCGA-AM-5821-01 12 51847391 51847391 T G SLC4A8 Missense_Mutation p.L161R 0.10 deleterious(0) possibly_damaging(0.899) TCGA-AM-5821-01 12 52200971 52200971 G A SCN8A Missense_Mutation p.V1901I 0.11 tolerated(0.81) benign(0.014) TCGA-AM-5821-01 12 52881878 52881878 G A KRT6A Silent p.G478G 0.13 TCGA-AM-5821-01 12 52908918 52908918 A G KRT5 Silent p.G527G 0.16 TCGA-AM-5821-01 12 53164796 53164796 C T KRT76 Missense_Mutation p.G491R 0.55 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 12 53496020 53496020 C T IGFBP6 3'UTR 0.14 TCGA-AM-5821-01 12 53516885 53516886 - G SOAT2 Frame_Shift_Ins p.V421Gfs*15 0.13 TCGA-AM-5821-01 12 53607281 53607281 T A RARG Silent p.G339G 0.43 TCGA-AM-5821-01 12 53607282 53607282 C A RARG Missense_Mutation p.G339V 0.44 deleterious(0.04) probably_damaging(0.983) TCGA-AM-5821-01 12 54744273 54744273 C T COPZ1 Missense_Mutation p.A167V 0.17 deleterious(0) benign(0.266) TCGA-AM-5821-01 12 54966512 54966512 G A PDE1B Missense_Mutation p.R241H 0.50 tolerated(0.63) possibly_damaging(0.898) TCGA-AM-5821-01 12 56397469 56397469 G T SUOX Missense_Mutation p.G99V 0.08 tolerated(0.09) possibly_damaging(0.882) TCGA-AM-5821-01 12 56510435 56510435 T - RPL41 5'UTR 0.38 TCGA-AM-5821-01 12 56604322 56604322 C T RNF41 Missense_Mutation p.A41T 0.41 tolerated(0.51) benign(0.07) TCGA-AM-5821-01 12 56718899 56718899 T C PAN2 Missense_Mutation p.Y498C 0.11 deleterious(0) possibly_damaging(0.906) TCGA-AM-5821-01 12 56846890 56846890 G T MIP Missense_Mutation p.P191H 0.16 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 12 57674225 57674225 T C R3HDM2 Silent p.Q406Q 0.38 TCGA-AM-5821-01 12 57920920 57920920 C - MBD6 Frame_Shift_Del p.P666Hfs*9 0.25 TCGA-AM-5821-01 12 58121337 58121337 G A AGAP2-AS1 Missense_Mutation p.A188T 0.15 possibly_damaging(0.695) TCGA-AM-5821-01 12 58144819 58144819 C T CDK4 Missense_Mutation p.V137I 0.12 tolerated(0.38) benign(0.011) TCGA-AM-5821-01 12 6140674 6140674 A G VWF Missense_Mutation p.V919A 0.10 tolerated(0.87) possibly_damaging(0.579) TCGA-AM-5821-01 12 6181496 6181496 C A VWF Splice_Site p.X370_splice 0.58 TCGA-AM-5821-01 12 63544377 63544377 C T AVPR1A Silent p.P80P 0.15 TCGA-AM-5821-01 12 6649555 6649555 A G IFFO1 3'UTR 0.23 TCGA-AM-5821-01 12 6649573 6649573 C A IFFO1 3'UTR 0.15 TCGA-AM-5821-01 12 66712429 66712429 G A HELB Missense_Mutation p.R671H 0.12 deleterious(0.03) benign(0.26) TCGA-AM-5821-01 12 6707098 6707098 T G CHD4 Missense_Mutation p.K618N 0.15 deleterious(0.03) possibly_damaging(0.788) TCGA-AM-5821-01 12 68720768 68720769 - T MDM1 Frame_Shift_Ins p.R56Kfs*7 0.09 TCGA-AM-5821-01 12 69044226 69044226 C T RAP1B Missense_Mutation p.T35M 0.09 deleterious(0) possibly_damaging(0.531) TCGA-AM-5821-01 12 69140060 69140060 G A SLC35E3 5'UTR 0.33 TCGA-AM-5821-01 12 6924140 6924140 A G CD4 Missense_Mutation p.I197V 0.22 tolerated(0.17) benign(0.043) TCGA-AM-5821-01 12 71155297 71155297 A - PTPRR Frame_Shift_Del p.L194Cfs*48 0.23 TCGA-AM-5821-01 12 72366366 72366366 G A TPH2 Missense_Mutation p.E226K 0.25 tolerated(0.28) benign(0.081) TCGA-AM-5821-01 12 7362360 7362360 G A PEX5 Missense_Mutation p.A563T 0.19 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 12 7649641 7649641 T C CD163 Silent p.T289T 0.28 TCGA-AM-5821-01 12 77257090 77257090 C A CSRP2 Silent p.V49V 0.35 TCGA-AM-5821-01 12 81014140 81014141 - A PTPRQ Frame_Shift_Ins p.Q1865Afs*5 0.26 TCGA-AM-5821-01 12 81568620 81568620 G A ACSS3 Silent p.E384E 0.23 TCGA-AM-5821-01 12 8666243 8666243 C A CLEC4D 5'UTR 0.25 TCGA-AM-5821-01 12 88480223 88480223 C T CEP290 Missense_Mutation p.R1416H 0.56 probably_damaging(0.999) TCGA-AM-5821-01 12 90049658 90049658 G A ATP2B1 Silent p.G2G 0.11 TCGA-AM-5821-01 12 94543542 94543542 G A PLXNC1 Silent p.A265A 0.21 TCGA-AM-5821-01 12 94703751 94703751 G T CCDC41 Missense_Mutation p.S648R 0.13 deleterious(0.05) benign(0.39) TCGA-AM-5821-01 12 96370389 96370389 G A HAL Missense_Mutation p.R584C 0.10 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 12 96679844 96679844 C T CDK17 Silent p.Q433Q 0.11 TCGA-AM-5821-01 12 97301426 97301426 C T NEDD1 Intron 0.13 TCGA-AM-5821-01 12 99145235 99145235 T C ANKS1B Silent p.L1190L 0.21 TCGA-AM-5821-01 13 101182500 101182500 T C PCCA 3'UTR 0.22 TCGA-AM-5821-01 13 101777029 101777029 G A NALCN Missense_Mutation p.R708C 0.35 tolerated(0.12) benign(0.276) TCGA-AM-5821-01 13 101910853 101910853 T C NALCN Missense_Mutation p.S403G 0.25 tolerated(0.07) possibly_damaging(0.546) TCGA-AM-5821-01 13 103388907 103388908 - T CCDC168 Frame_Shift_Ins p.G85Rfs*2 0.15 TCGA-AM-5821-01 13 103519119 103519119 G T BIVM-ERCC5 Silent p.R1245R 0.22 TCGA-AM-5821-01 13 108883920 108883920 G A ABHD13 3'UTR 0.29 TCGA-AM-5821-01 13 111372556 111372556 G A ING1 3'UTR 0.37 TCGA-AM-5821-01 13 113750830 113750830 G A MCF2L Intron 0.13 TCGA-AM-5821-01 13 113817388 113817388 T C PROZ Missense_Mutation p.Y131H 0.31 deleterious(0) probably_damaging(0.986) TCGA-AM-5821-01 13 20315777 20315777 C T PSPC1 Missense_Mutation p.R327H 0.31 deleterious(0.02) possibly_damaging(0.548) TCGA-AM-5821-01 13 21752184 21752184 T - MRP63 3'UTR 0.14 TCGA-AM-5821-01 13 21752255 21752255 C T MRP63 3'UTR 0.16 TCGA-AM-5821-01 13 23911931 23911931 T A SACS Missense_Mutation p.E2028D 0.16 benign(0.003) TCGA-AM-5821-01 13 25171653 25171653 T A RP11-556N21.1 RNA 0.37 TCGA-AM-5821-01 13 30107104 30107104 G A SLC7A1 Missense_Mutation p.A129V 0.32 deleterious(0.03) probably_damaging(0.98) TCGA-AM-5821-01 13 30801561 30801562 - TA KATNAL1 Frame_Shift_Ins p.P379Yfs*13 0.24 TCGA-AM-5821-01 13 31495914 31495914 G A MEDAG Missense_Mutation p.E240K 0.19 deleterious(0.02) benign(0.031) TCGA-AM-5821-01 13 36686252 36686252 A G DCLK1 Silent p.A159A 0.17 TCGA-AM-5821-01 13 37011900 37011900 G - CCNA1 Frame_Shift_Del p.D146Tfs*19 0.26 TCGA-AM-5821-01 13 38934964 38934964 T - UFM1 3'UTR 0.12 TCGA-AM-5821-01 13 39261380 39261380 C T FREM2 5'UTR 0.35 TCGA-AM-5821-01 13 39263072 39263072 A G FREM2 Missense_Mutation p.N531D 0.18 deleterious(0) possibly_damaging(0.889) TCGA-AM-5821-01 13 39264204 39264204 A C FREM2 Missense_Mutation p.K908T 0.35 tolerated(0.05) benign(0.012) TCGA-AM-5821-01 13 41932460 41932460 C T NAA16 Missense_Mutation p.P370S 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-AM-5821-01 13 42189201 42189201 C G VWA8 Missense_Mutation p.S1544T 0.28 deleterious(0.01) probably_damaging(0.96) TCGA-AM-5821-01 13 44411268 44411269 - A CCDC122 3'UTR 0.29 TCGA-AM-5821-01 13 50206745 50206745 T - ARL11 3'UTR 0.14 TCGA-AM-5821-01 13 50235311 50235311 C T EBPL Silent p.E138E 0.09 TCGA-AM-5821-01 13 50590335 50590336 GT - TRIM13 3'Flank 0.20 TCGA-AM-5821-01 13 53421218 53421218 C T PCDH8 Missense_Mutation p.A452T 0.26 tolerated(1) benign(0.016) TCGA-AM-5821-01 13 60548500 60548500 C T DIAPH3 Missense_Mutation p.A546T 0.31 tolerated(0.21) benign(0.007) TCGA-AM-5821-01 13 72131174 72131174 T - DACH1 Frame_Shift_Del p.R520Gfs*25 0.26 TCGA-AM-5821-01 13 76430745 76430745 G A LMO7 Splice_Site p.X1355_splice 0.23 TCGA-AM-5821-01 13 77632521 77632521 A G MYCBP2 Silent p.C4349C 0.29 TCGA-AM-5821-01 13 77779661 77779661 G A MYCBP2 Missense_Mutation p.A1183V 0.29 possibly_damaging(0.85) TCGA-AM-5821-01 13 84453964 84453964 G A SLITRK1 Missense_Mutation p.T560M 0.29 deleterious(0.02) benign(0.035) TCGA-AM-5821-01 13 88330203 88330203 T - SLITRK5 Frame_Shift_Del p.Y855Tfs*5 0.21 TCGA-AM-5821-01 13 88330433 88330433 C T SLITRK5 Silent p.N930N 0.29 TCGA-AM-5821-01 13 88331828 88331828 T - SLITRK5 3'UTR 0.23 TCGA-AM-5821-01 13 99376193 99376193 C T SLC15A1 Missense_Mutation p.G113D 0.25 deleterious(0) probably_damaging(0.967) TCGA-AM-5821-01 13 99948212 99948212 A T GPR183 Missense_Mutation p.I63N 0.29 deleterious(0) probably_damaging(0.958) TCGA-AM-5821-01 14 100801206 100801206 C T WARS 3'UTR 0.38 TCGA-AM-5821-01 14 101349302 101349302 G A RTL1 Silent p.Y608Y 0.27 TCGA-AM-5821-01 14 102499745 102499745 G A DYNC1H1 Missense_Mutation p.R3446H 0.26 possibly_damaging(0.806) TCGA-AM-5821-01 14 102698107 102698107 C T MOK Silent p.E306E 0.15 TCGA-AM-5821-01 14 104570977 104570977 G A ASPG Missense_Mutation p.V319I 0.29 tolerated(0.61) benign(0.007) TCGA-AM-5821-01 14 105177461 105177461 C A INF2 Missense_Mutation p.L786M 0.23 deleterious(0) unknown(0) TCGA-AM-5821-01 14 105270813 105270813 T C ZBTB42 3'UTR 0.33 TCGA-AM-5821-01 14 105353223 105353223 C - CEP170B Frame_Shift_Del p.H885Tfs*28 0.40 TCGA-AM-5821-01 14 105959056 105959056 C T C14orf80 Silent p.C190C 0.37 TCGA-AM-5821-01 14 20296386 20296386 G A OR4N2 Missense_Mutation p.R260H 0.17 tolerated(0.07) benign(0.072) TCGA-AM-5821-01 14 20978992 20978992 A T RNASE10 Missense_Mutation p.D121V 0.26 tolerated(0.52) benign(0.001) TCGA-AM-5821-01 14 21560520 21560520 C A ZNF219 Missense_Mutation p.K312N 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-AM-5821-01 14 23237363 23237363 G - OXA1L Frame_Shift_Del p.A203Pfs*12 0.31 TCGA-AM-5821-01 14 23884233 23884233 C T MYH7 Missense_Mutation p.E1844K 0.22 deleterious(0) probably_damaging(0.961) TCGA-AM-5821-01 14 33243056 33243056 T C AKAP6 Missense_Mutation p.V1182A 0.16 deleterious(0) probably_damaging(0.968) TCGA-AM-5821-01 14 36004323 36004323 G A INSM2 Missense_Mutation p.V289I 0.27 deleterious(0.05) probably_damaging(0.992) TCGA-AM-5821-01 14 38679878 38679878 C T SSTR1 3'UTR 0.12 TCGA-AM-5821-01 14 45369733 45369733 T - C14orf28 Frame_Shift_Del p.F33Lfs*19 0.12 TCGA-AM-5821-01 14 47342737 47342737 A T MDGA2 Missense_Mutation p.L884H 0.30 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 14 50121730 50121730 A C POLE2 Silent p.A337A 0.33 TCGA-AM-5821-01 14 50251650 50251650 C T NEMF Missense_Mutation p.S1049N 0.11 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 14 51410987 51410987 G A PYGL Silent p.N45N 0.35 TCGA-AM-5821-01 14 52485858 52485858 G A NID2 Silent p.C983C 0.14 TCGA-AM-5821-01 14 52526937 52526937 C A NID2 Silent p.R224R 0.16 TCGA-AM-5821-01 14 55514703 55514703 A G SOCS4 3'UTR 0.39 TCGA-AM-5821-01 14 55650437 55650437 T - DLGAP5 Frame_Shift_Del p.K91Nfs*16 0.24 TCGA-AM-5821-01 14 57268466 57268466 A T OTX2 Missense_Mutation p.F294Y 0.10 deleterious(0.04) probably_damaging(0.985) TCGA-AM-5821-01 14 63735880 63735880 G A RHOJ Silent p.A77A 0.30 TCGA-AM-5821-01 14 64749662 64749662 G T ESR2 Silent p.S14S 0.29 TCGA-AM-5821-01 14 65008165 65008165 A G HSPA2 Missense_Mutation p.I200V 0.11 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-AM-5821-01 14 65198126 65198126 C A PLEKHG3 Silent p.T243T 0.20 TCGA-AM-5821-01 14 65208712 65208712 G A PLEKHG3 Missense_Mutation p.G770E 0.38 tolerated(0.43) benign(0.008) TCGA-AM-5821-01 14 67940378 67940378 T G TMEM229B Missense_Mutation p.E88A 0.31 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 14 69346788 69346788 A C ACTN1 Missense_Mutation p.I724S 0.31 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 14 70634850 70634850 C T SLC8A3 Missense_Mutation p.R97H 0.36 deleterious(0) probably_damaging(0.996) TCGA-AM-5821-01 14 71267734 71267734 T A MAP3K9 Missense_Mutation p.K157M 0.12 deleterious(0.04) benign(0.153) TCGA-AM-5821-01 14 72090894 72090894 C T SIPA1L1 Missense_Mutation p.R587W 0.27 deleterious(0) possibly_damaging(0.727) TCGA-AM-5821-01 14 74538992 74538992 G A ALDH6A1 Missense_Mutation p.R88C 0.28 deleterious(0.01) possibly_damaging(0.863) TCGA-AM-5821-01 14 74562660 74562660 T C LIN52 Missense_Mutation p.V39A 0.21 deleterious(0) probably_damaging(0.983) TCGA-AM-5821-01 14 75283721 75283721 T - YLPM1 Frame_Shift_Del p.F1928Sfs*33 0.08 TCGA-AM-5821-01 14 75373806 75373806 G A RPS6KL1 Missense_Mutation p.R521W 0.30 tolerated(0.08) benign(0.168) TCGA-AM-5821-01 14 75376668 75376668 G A RPS6KL1 Missense_Mutation p.T283I 0.16 tolerated(0.08) benign(0.01) TCGA-AM-5821-01 14 75538555 75538555 C T ZC2HC1C Missense_Mutation p.R427W 0.22 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 14 75601536 75601536 G T TMED10 3'UTR 0.21 TCGA-AM-5821-01 14 76045905 76045905 T C FLVCR2 Missense_Mutation p.M197T 0.35 deleterious(0.03) benign(0.105) TCGA-AM-5821-01 14 77275428 77275428 G T ANGEL1 Missense_Mutation p.P208H 0.36 tolerated(0.12) benign(0.285) TCGA-AM-5821-01 14 77765877 77765877 G A POMT2 Missense_Mutation p.R282C 0.14 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 14 81744248 81744248 T - STON2 Frame_Shift_Del p.K469Nfs*33 0.13 TCGA-AM-5821-01 14 86089825 86089825 A G FLRT2 Missense_Mutation p.E656G 0.30 deleterious(0) benign(0.097) TCGA-AM-5821-01 14 89016642 89016642 G A PTPN21 Silent p.S40S 0.17 TCGA-AM-5821-01 14 89343814 89343815 TA - TTC8 3'UTR 0.20 TCGA-AM-5821-01 14 92140527 92140527 A G CATSPERB Missense_Mutation p.L324P 0.34 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 14 94088580 94088580 T C UNC79 Silent p.S1490S 0.22 TCGA-AM-5821-01 14 94158179 94158179 G A UNC79 Missense_Mutation p.A2315T 0.16 tolerated(0.2) benign(0.016) TCGA-AM-5821-01 15 100331926 100331926 C A AC090825.1 5'Flank 0.53 TCGA-AM-5821-01 15 22383210 22383210 T C OR4N4 Silent p.I246I 0.28 TCGA-AM-5821-01 15 23931520 23931520 A G NDN Missense_Mutation p.V282A 0.26 deleterious(0) probably_damaging(0.985) TCGA-AM-5821-01 15 24925039 24925039 C A NPAP1 3'UTR 0.27 TCGA-AM-5821-01 15 24927833 24927833 A G NPAP1 3'UTR 0.28 TCGA-AM-5821-01 15 25981277 25981277 G A ATP10A Silent p.F222F 0.33 TCGA-AM-5821-01 15 29415697 29415697 C T FAM189A1 Missense_Mutation p.A489T 0.13 tolerated(1) benign(0.002) TCGA-AM-5821-01 15 31325066 31325066 G A TRPM1 Silent p.L943L 0.36 TCGA-AM-5821-01 15 33358847 33358847 G - FMN1 Frame_Shift_Del p.R414Efs*18 0.18 TCGA-AM-5821-01 15 33858957 33858957 C T RYR3 Missense_Mutation p.R409W 0.29 probably_damaging(0.983) TCGA-AM-5821-01 15 34649679 34649679 G A NUTM1 Missense_Mutation p.R1129H 0.54 tolerated(0.3) possibly_damaging(0.776) TCGA-AM-5821-01 15 39874924 39874924 G A THBS1 Missense_Mutation p.A200T 0.41 deleterious(0.03) benign(0.108) TCGA-AM-5821-01 15 39881262 39881262 G A THBS1 Missense_Mutation p.G583D 0.35 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 15 40917398 40917398 A G CASC5 Missense_Mutation p.R1672G 0.07 deleterious(0) possibly_damaging(0.888) TCGA-AM-5821-01 15 41388463 41388463 G A INO80 Silent p.L16L 0.33 TCGA-AM-5821-01 15 42703984 42703984 T G CAPN3 3'UTR 0.16 TCGA-AM-5821-01 15 44066398 44066398 T A ELL3 Silent p.R340R 0.15 TCGA-AM-5821-01 15 44166646 44166646 G A FRMD5 Missense_Mutation p.R384W 0.40 deleterious(0) possibly_damaging(0.614) TCGA-AM-5821-01 15 45388177 45388177 A G DUOX2 Missense_Mutation p.L1310P 0.31 deleterious(0.03) benign(0.092) TCGA-AM-5821-01 15 45406881 45406881 C T DUOXA2 Silent p.I26I 0.26 TCGA-AM-5821-01 15 56152961 56152961 A G NEDD4 Silent p.D577D 0.11 TCGA-AM-5821-01 15 58006972 58006972 A G POLR2M 3'UTR 0.14 TCGA-AM-5821-01 15 58834023 58834023 G A LIPC Missense_Mutation p.A105T 0.19 tolerated(0.39) benign(0.05) TCGA-AM-5821-01 15 59063742 59063742 G A FAM63B Missense_Mutation p.G50S 0.38 deleterious_low_confidence(0.03) benign(0.003) TCGA-AM-5821-01 15 62147081 62147081 C T VPS13C Missense_Mutation p.A3717T 0.05 tolerated(0.66) benign(0.002) TCGA-AM-5821-01 15 63363514 63363514 A - TPM1 3'UTR 0.35 TCGA-AM-5821-01 15 64995363 64995363 A C OAZ2 5'UTR 0.46 TCGA-AM-5821-01 15 65962527 65962527 C A DENND4A Splice_Site p.X1488_splice 0.33 TCGA-AM-5821-01 15 66727518 66727518 T C MAP2K1 Silent p.N78N 0.09 TCGA-AM-5821-01 15 66729175 66729175 G A MAP2K1 Missense_Mutation p.G128D 0.10 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 15 66995566 66995566 C - SMAD6 5'UTR 0.39 TCGA-AM-5821-01 15 68486294 68486294 A T CALML4 3'UTR 0.34 TCGA-AM-5821-01 15 72170430 72170430 A - MYO9A Frame_Shift_Del p.L1961* 0.10 TCGA-AM-5821-01 15 72552943 72552943 C T PARP6 Missense_Mutation p.R211H 0.38 tolerated_low_confidence(0.23) benign(0.008) TCGA-AM-5821-01 15 73028309 73028309 T C BBS4 Splice_Site p.X416_splice 0.29 TCGA-AM-5821-01 15 74640341 74640341 G T CYP11A1 Missense_Mutation p.L109I 0.21 tolerated(0.3) benign(0.002) TCGA-AM-5821-01 15 75221558 75221558 C T COX5A Missense_Mutation p.R39H 0.31 deleterious(0.04) benign(0.081) TCGA-AM-5821-01 15 75982078 75982078 C - CSPG4 Frame_Shift_Del p.G443Afs*16 0.12 TCGA-AM-5821-01 15 76235826 76235826 T C NRG4 3'UTR 0.27 TCGA-AM-5821-01 15 77407441 77407441 T - PEAK1 Frame_Shift_Del p.N1433Tfs*19 0.10 TCGA-AM-5821-01 15 77763281 77763281 G T HMG20A Missense_Mutation p.K160N 0.28 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 15 78582397 78582397 C T WDR61 Missense_Mutation p.A122T 0.10 deleterious(0.03) possibly_damaging(0.736) TCGA-AM-5821-01 15 85345286 85345288 CTC - ZNF592 In_Frame_Del p.L1157del 0.15 TCGA-AM-5821-01 15 85405949 85405949 C T ALPK3 Nonsense_Mutation p.R1607* 0.36 TCGA-AM-5821-01 15 85487850 85487850 C T SLC28A1 Missense_Mutation p.L573F 0.31 deleterious(0.01) probably_damaging(1) TCGA-AM-5821-01 15 89421320 89421320 G A HAPLN3 Missense_Mutation p.R322C 0.26 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 15 89422370 89422370 G A HAPLN3 Silent p.G208G 0.27 TCGA-AM-5821-01 15 90195874 90195874 C T KIF7 Silent p.T96T 0.23 TCGA-AM-5821-01 15 91034773 91034773 C T IQGAP1 Missense_Mutation p.A1486V 0.10 tolerated(0.07) probably_damaging(0.951) TCGA-AM-5821-01 15 91422969 91422969 C T FURIN Missense_Mutation p.A408V 0.14 deleterious(0.04) benign(0.024) TCGA-AM-5821-01 15 94888389 94888389 G T MCTP2 Missense_Mutation p.S334I 0.06 tolerated(0.07) benign(0.14) TCGA-AM-5821-01 15 96876677 96876677 C T NR2F2 Intron 0.38 TCGA-AM-5821-01 16 14970528 14970528 C T NOMO1 Missense_Mutation p.P842S 0.31 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 16 1498434 1498434 G A CLCN7 Silent p.G645G 0.14 TCGA-AM-5821-01 16 15788062 15788062 G A NDE1 Silent p.A248A 0.25 TCGA-AM-5821-01 16 16360925 16360925 C T NOMO3 Missense_Mutation p.R611C 0.31 deleterious(0.01) benign(0.326) TCGA-AM-5821-01 16 2004061 2004061 G A RPL3L Missense_Mutation p.T31M 0.37 deleterious(0) benign(0.34) TCGA-AM-5821-01 16 2030700 2030700 C T NOXO1 Silent p.A60A 0.22 TCGA-AM-5821-01 16 20430566 20430566 G A ACSM5 Silent p.P144P 0.33 TCGA-AM-5821-01 16 20975196 20975196 G A DNAH3 Missense_Mutation p.T3337M 0.35 deleterious(0.02) benign(0.006) TCGA-AM-5821-01 16 21261113 21261113 G A ANKS4B Missense_Mutation p.G76S 0.32 deleterious(0) probably_damaging(0.964) TCGA-AM-5821-01 16 2140780 2140780 C T PKD1 Silent p.Q4011Q 0.36 TCGA-AM-5821-01 16 21994468 21994468 T C UQCRC2 Silent p.H446H 0.32 TCGA-AM-5821-01 16 22335720 22335720 G A POLR3E Missense_Mutation p.A372T 0.27 tolerated(0.13) benign(0.007) TCGA-AM-5821-01 16 22558313 22558313 C A RP11-368J21.3 RNA 0.16 TCGA-AM-5821-01 16 23113727 23113727 C T USP31 Missense_Mutation p.D383N 0.33 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 16 23716336 23716336 C T ERN2 Missense_Mutation p.R289H 0.16 tolerated(0.2) benign(0.02) TCGA-AM-5821-01 16 27784454 27784454 C T KIAA0556 Silent p.G1411G 0.26 TCGA-AM-5821-01 16 2821449 2821449 G - TCEB2 3'UTR 0.18 TCGA-AM-5821-01 16 28509206 28509206 G T APOBR Missense_Mutation p.E948D 0.19 tolerated(0.76) possibly_damaging(0.682) TCGA-AM-5821-01 16 30080204 30080204 C T ALDOA Missense_Mutation p.R203C 0.31 deleterious(0) possibly_damaging(0.668) TCGA-AM-5821-01 16 30536535 30536535 C T ZNF768 Missense_Mutation p.R309H 0.09 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AM-5821-01 16 30596778 30596778 G A ZNF785 Missense_Mutation p.A52V 0.18 deleterious(0.02) probably_damaging(0.918) TCGA-AM-5821-01 16 30977188 30977188 C A SETD1A Silent p.S662S 0.12 TCGA-AM-5821-01 16 30983032 30983032 G T SETD1A Missense_Mutation p.R1117M 0.20 unknown(0) TCGA-AM-5821-01 16 30990795 30990795 C T SETD1A Missense_Mutation p.R1230W 0.33 unknown(0) TCGA-AM-5821-01 16 31122032 31122032 T C BCKDK Silent p.C222C 0.14 TCGA-AM-5821-01 16 31228178 31228178 C T PYDC1 Missense_Mutation p.A58T 0.12 tolerated(0.07) benign(0.064) TCGA-AM-5821-01 16 31447251 31447251 G T ZNF843 Missense_Mutation p.A307D 0.51 tolerated_low_confidence(0.43) possibly_damaging(0.82) TCGA-AM-5821-01 16 3349765 3349765 A T TIGD7 Missense_Mutation p.F284I 0.18 tolerated(0.56) benign(0.006) TCGA-AM-5821-01 16 3554749 3554749 T C CLUAP1 Missense_Mutation p.Y18H 0.15 deleterious(0) probably_damaging(0.996) TCGA-AM-5821-01 16 3842083 3842083 G A CREBBP Missense_Mutation p.A410V 0.33 probably_damaging(0.981) TCGA-AM-5821-01 16 4164735 4164735 C T ADCY9 Missense_Mutation p.V237I 0.27 tolerated(0.07) benign(0.02) TCGA-AM-5821-01 16 47001498 47001498 G A DNAJA2 Silent p.R168R 0.31 TCGA-AM-5821-01 16 4738599 4738599 A G MGRN1 Intron 0.22 TCGA-AM-5821-01 16 4933707 4933707 C T PPL Missense_Mutation p.R1650Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 16 50753861 50753861 G A NOD2 Missense_Mutation p.A886T 0.26 tolerated(0.05) benign(0.005) TCGA-AM-5821-01 16 5125391 5125391 C - ALG1 Frame_Shift_Del p.P133Qfs*59 0.19 TCGA-AM-5821-01 16 5140153 5140153 T C FAM86A Missense_Mutation p.Q225R 0.45 tolerated(0.09) benign(0.086) TCGA-AM-5821-01 16 53190077 53190077 G A CHD9 Missense_Mutation p.A26T 0.19 benign(0.028) TCGA-AM-5821-01 16 53686654 53686654 G A RPGRIP1L Nonsense_Mutation p.R649* 0.12 TCGA-AM-5821-01 16 54967591 54967591 C T IRX5 Missense_Mutation p.H420Y 0.10 deleterious(0.04) unknown(0) TCGA-AM-5821-01 16 55363164 55363164 C T IRX6 Missense_Mutation p.A425V 0.14 tolerated(0.08) benign(0.015) TCGA-AM-5821-01 16 57059431 57059431 G - NLRC5 Frame_Shift_Del p.A194Pfs*14 0.11 TCGA-AM-5821-01 16 66551054 66551056 CTC - TK2 In_Frame_Del p.E201del 0.32 TCGA-AM-5821-01 16 66839724 66839724 C T NAE1 Missense_Mutation p.R484Q 0.37 deleterious(0) probably_damaging(0.988) TCGA-AM-5821-01 16 66946745 66946745 G A CDH16 Silent p.S368S 0.31 TCGA-AM-5821-01 16 67188405 67188405 G T TRADD 3'UTR 0.12 TCGA-AM-5821-01 16 67229829 67229829 G A E2F4 Missense_Mutation p.S318N 0.30 tolerated(0.53) benign(0.002) TCGA-AM-5821-01 16 67858552 67858552 A G TSNAXIP1 Missense_Mutation p.D129G 0.28 deleterious(0.03) benign(0.007) TCGA-AM-5821-01 16 67859941 67859941 G A TSNAXIP1 Missense_Mutation p.R315H 0.22 tolerated(0.24) benign(0.077) TCGA-AM-5821-01 16 68732445 68732445 C T CDH3 3'UTR 0.45 TCGA-AM-5821-01 16 68893886 68893886 C A TANGO6 Missense_Mutation p.P65H 0.24 deleterious(0.01) possibly_damaging(0.711) TCGA-AM-5821-01 16 69418540 69418540 C T TERF2 Silent p.T141T 0.36 TCGA-AM-5821-01 16 70721827 70721827 C T VAC14 3'UTR 0.18 TCGA-AM-5821-01 16 71888910 71888910 A C ATXN1L 3'UTR 0.20 TCGA-AM-5821-01 16 721703 721703 C T RHOT2 Silent p.H292H 0.35 TCGA-AM-5821-01 16 72993737 72993737 C T ZFHX3 Missense_Mutation p.R103H 0.27 possibly_damaging(0.749) TCGA-AM-5821-01 16 731452 731452 A G STUB1 Missense_Mutation p.K125E 0.37 tolerated(0.08) possibly_damaging(0.85) TCGA-AM-5821-01 16 74501659 74501659 C T GLG1 Missense_Mutation p.A842T 0.33 deleterious(0.01) possibly_damaging(0.852) TCGA-AM-5821-01 16 75573858 75573858 C G TMEM231 3'UTR 0.32 TCGA-AM-5821-01 16 77359905 77359905 A C ADAMTS18 Silent p.G630G 0.33 TCGA-AM-5821-01 16 778792 778794 AGA - HAGHL Splice_Site p.X167_splice 0.13 TCGA-AM-5821-01 16 81053830 81053830 C T CENPN Silent p.Y160Y 0.23 TCGA-AM-5821-01 16 81151024 81151024 G A PKD1L2 RNA 0.13 TCGA-AM-5821-01 16 81181814 81181814 C - PKD1L2 RNA 0.23 TCGA-AM-5821-01 16 81204175 81204175 G T PKD1L2 3'Flank 0.30 TCGA-AM-5821-01 16 81295810 81295810 C T BCMO1 Silent p.C131C 0.14 TCGA-AM-5821-01 16 81398954 81398954 G T GAN Splice_Site p.X458_splice 0.36 TCGA-AM-5821-01 16 84456129 84456129 A G ATP2C2 Missense_Mutation p.Q253R 0.15 tolerated(1) benign(0.042) TCGA-AM-5821-01 16 84691284 84691284 C T KLHL36 Missense_Mutation p.R291C 0.14 deleterious(0.04) benign(0.247) TCGA-AM-5821-01 16 87921872 87921872 C T CA5A Missense_Mutation p.A261T 0.35 tolerated(0.2) benign(0.248) TCGA-AM-5821-01 16 88778697 88778697 G A CTU2 Missense_Mutation p.G120D 0.12 tolerated(0.06) possibly_damaging(0.665) TCGA-AM-5821-01 16 88873500 88873500 G A CDT1 Silent p.A388A 0.41 TCGA-AM-5821-01 16 88945840 88945840 C A CBFA2T3 Missense_Mutation p.Q500H 0.19 deleterious(0.02) possibly_damaging(0.844) TCGA-AM-5821-01 16 89345531 89345531 C T ANKRD11 Silent p.T2473T 0.37 TCGA-AM-5821-01 16 9934865 9934865 G A GRIN2A Silent p.Y475Y 0.36 TCGA-AM-5821-01 17 10322227 10322227 G A MYH8 Missense_Mutation p.R111C 0.34 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 17 1442224 1442224 G A PITPNA Missense_Mutation p.A132V 0.42 tolerated(0.22) benign(0) TCGA-AM-5821-01 17 1553124 1553124 C - RILP 5'UTR 0.30 TCGA-AM-5821-01 17 15535931 15535931 G T RP11-385D13.1 Missense_Mutation p.L303M 0.13 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-AM-5821-01 17 16553061 16553061 C A ZNF624 Splice_Site 0.13 TCGA-AM-5821-01 17 17119707 17119707 G A FLCN Silent p.H429H 0.22 TCGA-AM-5821-01 17 17700182 17700182 G A RAI1 Missense_Mutation p.R1307Q 0.22 tolerated(0.12) benign(0.037) TCGA-AM-5821-01 17 17723596 17723596 G T SREBF1 Missense_Mutation p.P141T 0.13 tolerated(0.14) possibly_damaging(0.818) TCGA-AM-5821-01 17 18141423 18141423 G A LLGL1 Silent p.P649P 0.32 TCGA-AM-5821-01 17 18429017 18429017 A G FAM106A 3'UTR 0.29 TCGA-AM-5821-01 17 26958612 26958612 G A KIAA0100 Missense_Mutation p.A1395V 0.27 deleterious(0.01) possibly_damaging(0.709) TCGA-AM-5821-01 17 27869690 27869690 G T TAOK1 Missense_Mutation p.G886C 0.10 deleterious(0) probably_damaging(0.978) TCGA-AM-5821-01 17 28747870 28747870 G A CPD Missense_Mutation p.D336N 0.12 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 17 3195642 3195642 C T OR3A1 Missense_Mutation p.V79I 0.13 tolerated(0.1) benign(0.069) TCGA-AM-5821-01 17 33462328 33462328 C T NLE1 Missense_Mutation p.R385H 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-AM-5821-01 17 33463213 33463213 G A NLE1 Missense_Mutation p.A329V 0.15 deleterious(0.03) possibly_damaging(0.615) TCGA-AM-5821-01 17 33769162 33769162 C A SLFN13 Missense_Mutation p.D448Y 0.33 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 17 34183736 34183736 G A C17orf66 Missense_Mutation p.A409V 0.15 tolerated(0.13) benign(0.14) TCGA-AM-5821-01 17 34893348 34893348 G A PIGW Missense_Mutation p.R133H 0.30 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 17 34894593 34894593 G A PIGW 3'UTR 0.31 TCGA-AM-5821-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.49 TCGA-AM-5821-01 17 35932032 35932032 G A SYNRG Missense_Mutation p.A319V 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-AM-5821-01 17 36708773 36708773 G A SRCIN1 Missense_Mutation p.A797V 0.15 deleterious(0) probably_damaging(0.979) TCGA-AM-5821-01 17 36878142 36878142 A G MLLT6 Silent p.S818S 0.23 TCGA-AM-5821-01 17 36878933 36878933 T C MLLT6 Missense_Mutation p.L932P 0.13 deleterious(0.03) probably_damaging(0.979) TCGA-AM-5821-01 17 37321999 37321999 G A ARL5C Silent p.I5I 0.30 TCGA-AM-5821-01 17 37686892 37686892 C - CDK12 Frame_Shift_Del p.P1267Lfs*27 0.35 TCGA-AM-5821-01 17 37922003 37922003 C T IKZF3 3'UTR 0.14 TCGA-AM-5821-01 17 3819509 3819509 C T P2RX1 Missense_Mutation p.R4Q 0.19 tolerated(0.61) benign(0.002) TCGA-AM-5821-01 17 38711700 38711700 A G CCR7 Missense_Mutation p.M144T 0.14 deleterious(0) probably_damaging(0.988) TCGA-AM-5821-01 17 39240487 39240487 G A KRTAP4-7 Missense_Mutation p.C10Y 0.15 deleterious(0) unknown(0) TCGA-AM-5821-01 17 39657471 39657471 G T KRT13 3'UTR 0.25 TCGA-AM-5821-01 17 39661725 39661725 G A KRT13 Silent p.G26G 0.29 TCGA-AM-5821-01 17 40120732 40120732 A G CNP Missense_Mutation p.K217R 0.51 tolerated(0.13) benign(0.019) TCGA-AM-5821-01 17 40277793 40277794 - G RAB5C 3'UTR 0.38 TCGA-AM-5821-01 17 40341708 40341708 G A GHDC 3'UTR 0.21 TCGA-AM-5821-01 17 41004706 41004706 C T AOC3 Missense_Mutation p.S449L 0.33 deleterious(0) probably_damaging(0.977) TCGA-AM-5821-01 17 41143478 41143478 T - RUNDC1 Frame_Shift_Del p.F530Lfs*9 0.09 TCGA-AM-5821-01 17 41166342 41166342 C - IFI35 3'UTR 0.31 TCGA-AM-5821-01 17 41177446 41177446 G A RND2 Missense_Mutation p.A28T 0.37 deleterious(0.03) probably_damaging(0.943) TCGA-AM-5821-01 17 41931306 41931306 C A CD300LG Missense_Mutation p.P205T 0.37 tolerated(0.81) benign(0.002) TCGA-AM-5821-01 17 42330593 42330593 G A SLC4A1 Missense_Mutation p.A735V 0.23 tolerated(0.88) benign(0.168) TCGA-AM-5821-01 17 42429850 42429850 G A GRN Missense_Mutation p.V519M 0.30 deleterious(0) probably_damaging(0.974) TCGA-AM-5821-01 17 43189957 43189957 G T PLCD3 3'UTR 0.12 TCGA-AM-5821-01 17 43322238 43322238 A G FMNL1 Missense_Mutation p.Y857C 0.24 deleterious(0.01) probably_damaging(0.925) TCGA-AM-5821-01 17 43506966 43506966 C T ARHGAP27 5'Flank 0.35 TCGA-AM-5821-01 17 4461360 4461360 C T GGT6 Missense_Mutation p.A478T 0.16 tolerated(0.09) benign(0.028) TCGA-AM-5821-01 17 45369872 45369872 C T ITGB3 Missense_Mutation p.T543M 0.33 deleterious(0.01) possibly_damaging(0.805) TCGA-AM-5821-01 17 46135788 46135788 G - NFE2L1 Frame_Shift_Del p.G370Afs*44 0.36 TCGA-AM-5821-01 17 46136380 46136380 C T NFE2L1 Missense_Mutation p.P566S 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-AM-5821-01 17 46675595 46675595 T C HOXB6 5'UTR 0.40 TCGA-AM-5821-01 17 47295170 47295170 C T ABI3 Missense_Mutation p.P119S 0.44 tolerated(0.55) benign(0.137) TCGA-AM-5821-01 17 47300020 47300020 C T ABI3 Silent p.G348G 0.21 TCGA-AM-5821-01 17 47301826 47301826 C A PHOSPHO1 Nonsense_Mutation p.E221* 0.25 TCGA-AM-5821-01 17 48072373 48072373 G A DLX3 5'UTR 0.26 TCGA-AM-5821-01 17 48244831 48244831 G A SGCA Missense_Mutation p.S47N 0.21 tolerated(0.59) benign(0.01) TCGA-AM-5821-01 17 48458305 48458305 A G EME1 3'UTR 0.15 TCGA-AM-5821-01 17 48685328 48685328 G A CACNA1G Silent p.E1551E 0.16 TCGA-AM-5821-01 17 48917546 48917546 T C WFIKKN2 Silent p.D299D 0.17 TCGA-AM-5821-01 17 4997794 4997795 - G ZFP3 3'UTR 0.22 TCGA-AM-5821-01 17 5035591 5035591 T C USP6 Intron 0.11 TCGA-AM-5821-01 17 5265072 5265072 C T RABEP1 Intron 0.54 TCGA-AM-5821-01 17 53121179 53121179 T - STXBP4 Intron 0.17 TCGA-AM-5821-01 17 54968999 54968999 C T TRIM25 3'UTR 0.31 TCGA-AM-5821-01 17 56388483 56388483 C T BZRAP1 Missense_Mutation p.R1058H 0.19 deleterious(0) probably_damaging(0.991) TCGA-AM-5821-01 17 56405061 56405061 C - BZRAP1 Frame_Shift_Del p.G74Efs*37 0.28 TCGA-AM-5821-01 17 56833357 56833357 C T PPM1E 5'UTR 0.30 TCGA-AM-5821-01 17 6338416 6338416 G A AIPL1 Silent p.A3A 0.38 TCGA-AM-5821-01 17 7127173 7127173 G - ACADVL Frame_Shift_Del p.G462Vfs*5 0.28 TCGA-AM-5821-01 17 7230844 7230844 A G NEURL4 Silent p.P214P 0.22 TCGA-AM-5821-01 17 72368615 72368615 G A GPR142 Missense_Mutation p.R422Q 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-AM-5821-01 17 7296184 7296184 C T TMEM256-PLSCR3 Missense_Mutation p.A199T 0.19 tolerated(0.12) possibly_damaging(0.765) TCGA-AM-5821-01 17 73657035 73657035 C A RECQL5 Missense_Mutation p.R329M 0.11 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 17 73832678 73832678 G A UNC13D Missense_Mutation p.P425S 0.19 tolerated(0.11) benign(0.071) TCGA-AM-5821-01 17 73840387 73840387 C G UNC13D Missense_Mutation p.R11P 0.50 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-AM-5821-01 17 74878237 74878237 G - MGAT5B Frame_Shift_Del p.G75Afs*11 0.17 TCGA-AM-5821-01 17 75208197 75208197 C T SEC14L1 Nonsense_Mutation p.Q593* 0.20 TCGA-AM-5821-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.16 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 17 76354785 76354785 G - SOCS3 Frame_Shift_Del p.P131Lfs*48 0.26 TCGA-AM-5821-01 17 76445502 76445502 C T DNAH17 Silent p.T3721T 0.40 TCGA-AM-5821-01 17 76888494 76888494 G A DDC8 Missense_Mutation p.A31V 0.57 deleterious_low_confidence(0) benign(0.006) TCGA-AM-5821-01 17 7689453 7689453 C T DNAH2 Silent p.T2047T 0.28 TCGA-AM-5821-01 17 7696054 7696054 C A DNAH2 Missense_Mutation p.Q2409K 0.36 benign(0.013) TCGA-AM-5821-01 17 7750924 7750924 C T KDM6B Missense_Mutation p.P440S 0.32 unknown(0) TCGA-AM-5821-01 17 7752681 7752681 C T KDM6B Silent p.S1025S 0.11 TCGA-AM-5821-01 17 7756658 7756658 G A KDM6B Missense_Mutation p.R1623H 0.19 possibly_damaging(0.516) TCGA-AM-5821-01 17 7829035 7829035 G A KCNAB3 Silent p.T168T 0.34 TCGA-AM-5821-01 17 78367363 78367363 G A RNF213 3'UTR 0.68 TCGA-AM-5821-01 17 79517820 79517820 T C C17orf70 Missense_Mutation p.T234A 0.28 tolerated(1) benign(0.006) TCGA-AM-5821-01 17 79612317 79612317 G - TSPAN10 Frame_Shift_Del p.L116Cfs*19 0.19 TCGA-AM-5821-01 17 79863270 79863270 G A PCYT2 Silent p.S337S 0.16 TCGA-AM-5821-01 17 79873373 79873373 G A SIRT7 Silent p.S141S 0.16 TCGA-AM-5821-01 17 80043564 80043564 C T FASN Missense_Mutation p.A1306T 0.21 tolerated(0.57) benign(0.003) TCGA-AM-5821-01 17 80772758 80772758 G A TBCD Silent p.A422A 0.34 TCGA-AM-5821-01 17 80789740 80789740 C T ZNF750 Silent p.K197K 0.32 TCGA-AM-5821-01 17 8141718 8141718 T C CTC1 Missense_Mutation p.S143G 0.19 tolerated(1) benign(0.001) TCGA-AM-5821-01 17 9739711 9739711 G T GLP2R Missense_Mutation p.D101Y 0.32 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 18 11752477 11752477 C T GNAL Intron 0.40 TCGA-AM-5821-01 18 12703132 12703132 C - PSMG2 Frame_Shift_Del p.D11Tfs*8 0.29 TCGA-AM-5821-01 18 13053084 13053084 C T CEP192 Missense_Mutation p.R1062C 0.38 tolerated(0.34) benign(0.002) TCGA-AM-5821-01 18 14542881 14542881 A G POTEC Missense_Mutation p.S89P 0.08 deleterious_low_confidence(0) benign(0.307) TCGA-AM-5821-01 18 19437126 19437126 C T MIB1 Nonsense_Mutation p.R901* 0.25 TCGA-AM-5821-01 18 21426335 21426335 C A LAMA3 Missense_Mutation p.P1265H 0.17 probably_damaging(1) TCGA-AM-5821-01 18 214889 214889 C T THOC1 Missense_Mutation p.G571R 0.23 tolerated(0.48) benign(0.124) TCGA-AM-5821-01 18 22807422 22807422 G T ZNF521 Missense_Mutation p.L154M 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-AM-5821-01 18 25585818 25585818 T C CDH2 Missense_Mutation p.K281R 0.08 tolerated(0.2) probably_damaging(0.939) TCGA-AM-5821-01 18 29210958 29210958 C T B4GALT6 Missense_Mutation p.R247H 0.31 deleterious(0) probably_damaging(0.967) TCGA-AM-5821-01 18 42530560 42530560 A - SETBP1 Frame_Shift_Del p.R421Dfs*23 0.19 TCGA-AM-5821-01 18 44013234 44013234 T G RNF165 Missense_Mutation p.L48R 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-AM-5821-01 18 44057761 44057761 G A LOXHD1 Missense_Mutation p.P1055S 0.28 tolerated(0.12) probably_damaging(1) TCGA-AM-5821-01 18 44426805 44426805 C A PIAS2 Splice_Site p.X243_splice 0.10 TCGA-AM-5821-01 18 44560893 44560893 A G TCEB3B Missense_Mutation p.L248S 0.15 tolerated(0.15) benign(0.002) TCGA-AM-5821-01 18 44561726 44561726 G A TCEB3B 5'UTR 0.32 TCGA-AM-5821-01 18 48510668 48510668 T C ELAC1 Silent p.V120V 0.25 TCGA-AM-5821-01 18 50918079 50918079 T C DCC Missense_Mutation p.V837A 0.35 tolerated(0.08) benign(0.001) TCGA-AM-5821-01 18 54424391 54424391 G A WDR7 Missense_Mutation p.C856Y 0.11 tolerated(1) benign(0) TCGA-AM-5821-01 18 56247236 56247236 G A ALPK2 Missense_Mutation p.R258C 0.14 tolerated(0.08) benign(0) TCGA-AM-5821-01 18 56606813 56606813 G A ZNF532 Missense_Mutation p.A889T 0.37 tolerated(0.33) benign(0.107) TCGA-AM-5821-01 18 624894 624894 A G CLUL1 Silent p.Q95Q 0.10 TCGA-AM-5821-01 18 64211252 64211252 G A CDH19 Silent p.G390G 0.23 TCGA-AM-5821-01 18 72244121 72244121 T C CNDP1 Missense_Mutation p.S287P 0.32 deleterious(0.04) possibly_damaging(0.646) TCGA-AM-5821-01 18 74082494 74082494 C T ZNF516 Missense_Mutation p.A1141T 0.15 deleterious(0.02) benign(0.002) TCGA-AM-5821-01 18 77960621 77960621 G A PARD6G Silent p.P89P 0.34 TCGA-AM-5821-01 18 9570385 9570386 AA - PPP4R1 Frame_Shift_Del p.L448Rfs*6 0.24 TCGA-AM-5821-01 19 1010455 1010455 G - TMEM259 Frame_Shift_Del p.P586Rfs*16 0.29 TCGA-AM-5821-01 19 1011127 1011127 G T TMEM259 Missense_Mutation p.L429M 0.27 tolerated(0.05) probably_damaging(1) TCGA-AM-5821-01 19 10561295 10561295 G A PDE4A Missense_Mutation p.G213S 0.34 tolerated(0.41) benign(0.011) TCGA-AM-5821-01 19 10561553 10561553 G T PDE4A Missense_Mutation p.W240L 0.24 deleterious(0.01) benign(0.412) TCGA-AM-5821-01 19 10574526 10574526 C T PDE4A Silent p.L601L 0.28 TCGA-AM-5821-01 19 10781796 10781796 C T ILF3 Silent p.D50D 0.15 TCGA-AM-5821-01 19 10941731 10941731 G - DNM2 3'UTR 0.22 TCGA-AM-5821-01 19 11015634 11015637 TGTG - CARM1 Frame_Shift_Del p.C78Sfs*46 0.12 TCGA-AM-5821-01 19 11892550 11892550 T C ZNF441 Silent p.H637H 0.40 TCGA-AM-5821-01 19 12359487 12359487 A G ZNF44 Silent p.H76H 0.18 TCGA-AM-5821-01 19 12384585 12384585 G T ZNF44 Missense_Mutation p.P210H 0.16 deleterious(0.02) possibly_damaging(0.88) TCGA-AM-5821-01 19 1279035 1279035 A C C19orf24 3'UTR 0.38 TCGA-AM-5821-01 19 14582523 14582523 G A PKN1 Missense_Mutation p.R925H 0.22 tolerated(0.09) benign(0.393) TCGA-AM-5821-01 19 15271820 15271820 G A NOTCH3 Missense_Mutation p.R2207W 0.23 deleterious(0.03) possibly_damaging(0.846) TCGA-AM-5821-01 19 15296215 15296215 G A NOTCH3 Missense_Mutation p.R717C 0.30 tolerated(0.06) probably_damaging(0.927) TCGA-AM-5821-01 19 15349122 15349122 G A BRD4 3'UTR 0.23 TCGA-AM-5821-01 19 15355127 15355127 C A BRD4 Missense_Mutation p.Q832H 0.12 benign(0.216) TCGA-AM-5821-01 19 16625351 16625351 G A C19orf44 Silent p.V593V 0.09 TCGA-AM-5821-01 19 17085982 17085982 C T CPAMD8 Silent p.T712T 0.38 TCGA-AM-5821-01 19 17449356 17449356 C T GTPBP3 Missense_Mutation p.P133S 0.26 deleterious(0.04) possibly_damaging(0.828) TCGA-AM-5821-01 19 17974089 17974089 C T RPL18A 3'UTR 0.42 TCGA-AM-5821-01 19 19291512 19291512 G - MEF2BNB 3'UTR 0.21 TCGA-AM-5821-01 19 19654796 19654796 C A CILP2 Missense_Mutation p.A481D 0.34 deleterious(0) possibly_damaging(0.717) TCGA-AM-5821-01 19 1979523 1979523 C T CSNK1G2 Missense_Mutation p.R295W 0.14 deleterious(0.01) probably_damaging(1) TCGA-AM-5821-01 19 20236058 20236058 G A CTC-260E6.2 RNA 0.21 TCGA-AM-5821-01 19 2290108 2290108 G A LINGO3 Silent p.R556R 0.36 TCGA-AM-5821-01 19 23159585 23159585 A C ZNF728 Missense_Mutation p.L185R 0.26 tolerated(0.16) probably_damaging(0.929) TCGA-AM-5821-01 19 23405872 23405872 T C ZNF724P Missense_Mutation p.K392R 0.20 deleterious(0.03) probably_damaging(0.976) TCGA-AM-5821-01 19 23544457 23544457 C A ZNF91 Missense_Mutation p.A442S 0.36 tolerated(0.1) benign(0.265) TCGA-AM-5821-01 19 2917024 2917024 T C ZNF57 Silent p.A135A 0.08 TCGA-AM-5821-01 19 31040352 31040352 T G ZNF536 Missense_Mutation p.L1276V 0.11 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-AM-5821-01 19 3224953 3224953 C T CELF5 Silent p.Y72Y 0.31 TCGA-AM-5821-01 19 34263570 34263570 G A CHST8 Missense_Mutation p.A293T 0.15 tolerated(0.32) benign(0.047) TCGA-AM-5821-01 19 34842451 34842451 C A KIAA0355 Missense_Mutation p.T953K 0.31 deleterious_low_confidence(0.02) benign(0.177) TCGA-AM-5821-01 19 3539212 3539212 A G C19orf71 Missense_Mutation p.I13V 0.15 tolerated(1) benign(0) TCGA-AM-5821-01 19 36033853 36033853 G A GAPDHS Silent p.A222A 0.15 TCGA-AM-5821-01 19 36109528 36109528 C T HAUS5 Missense_Mutation p.R315W 0.43 tolerated(0.1) possibly_damaging(0.493) TCGA-AM-5821-01 19 36128409 36128409 G A RBM42 Missense_Mutation p.V466M 0.36 deleterious(0) unknown(0) TCGA-AM-5821-01 19 36216701 36216701 G A KMT2B Silent p.T1289T 0.14 TCGA-AM-5821-01 19 36222828 36222828 C - KMT2B Frame_Shift_Del p.P1821Hfs*74 0.31 TCGA-AM-5821-01 19 362345 362345 G A THEG Missense_Mutation p.A332V 0.39 deleterious(0) probably_damaging(0.994) TCGA-AM-5821-01 19 36607021 36607021 A G TBCB Missense_Mutation p.S65G 0.17 tolerated(0.43) benign(0) TCGA-AM-5821-01 19 38102620 38102620 A - ZNF540 Frame_Shift_Del p.M149Cfs*12 0.14 TCGA-AM-5821-01 19 38774302 38774302 C T SPINT2 Missense_Mutation p.R48W 0.32 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 19 38942453 38942453 G A RYR1 Missense_Mutation p.R391H 0.15 probably_damaging(0.978) TCGA-AM-5821-01 19 39359782 39359782 A G RINL Missense_Mutation p.W555R 0.27 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 19 39516190 39516190 G A FBXO27 Missense_Mutation p.T238I 0.09 deleterious(0) probably_damaging(0.925) TCGA-AM-5821-01 19 39669069 39669069 G A PAK4 Silent p.S542S 0.36 TCGA-AM-5821-01 19 40899959 40899959 G A PRX Missense_Mutation p.R1434W 0.18 deleterious(0) benign(0.266) TCGA-AM-5821-01 19 4168366 4168366 A - CREB3L3 Frame_Shift_Del p.I247Sfs*57 0.15 TCGA-AM-5821-01 19 41854348 41854348 T A TGFB1 Missense_Mutation p.K123M 0.32 tolerated(0.12) benign(0.282) TCGA-AM-5821-01 19 41928158 41928158 G A BCKDHA Missense_Mutation p.A246T 0.37 tolerated(0.28) possibly_damaging(0.848) TCGA-AM-5821-01 19 42510076 42510076 G A GRIK5 Missense_Mutation p.R688C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 19 42584767 42584767 G A ZNF574 Missense_Mutation p.G670D 0.14 tolerated(0.42) benign(0.021) TCGA-AM-5821-01 19 43439730 43439730 C T PSG7 Missense_Mutation p.G86S 0.26 tolerated(0.58) benign(0.005) TCGA-AM-5821-01 19 44224168 44224168 A - IRGC 3'UTR 0.14 TCGA-AM-5821-01 19 45004259 45004259 C A ZNF180 Nonsense_Mutation p.G12* 0.29 TCGA-AM-5821-01 19 45004260 45004260 A T ZNF180 Silent p.A11A 0.30 TCGA-AM-5821-01 19 45150616 45150616 G A PVR Silent p.A67A 0.32 TCGA-AM-5821-01 19 45262880 45262880 G - BCL3 3'UTR 0.35 TCGA-AM-5821-01 19 4558363 4558363 A G SEMA6B Missense_Mutation p.V36A 0.30 deleterious(0.04) possibly_damaging(0.528) TCGA-AM-5821-01 19 45856391 45856391 G T ERCC2 Missense_Mutation p.A594D 0.22 deleterious(0) probably_damaging(0.996) TCGA-AM-5821-01 19 46282773 46282773 A G DMPK Missense_Mutation p.V97A 0.13 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 19 46319754 46319754 C T SYMPK Missense_Mutation p.G1114R 0.30 tolerated(0.39) benign(0.034) TCGA-AM-5821-01 19 47768028 47768028 A C CCDC9 Splice_Site p.X183_splice 0.43 TCGA-AM-5821-01 19 47920145 47920145 G A MEIS3 Silent p.A87A 0.37 TCGA-AM-5821-01 19 48049093 48049094 - G ZNF541 Frame_Shift_Ins p.E232Gfs*50 0.17 TCGA-AM-5821-01 19 48821807 48821807 A G CCDC114 Missense_Mutation p.V29A 0.19 tolerated(0.3) benign(0.064) TCGA-AM-5821-01 19 48919285 48919285 C A GRIN2D Silent p.A536A 0.10 TCGA-AM-5821-01 19 49334971 49334971 C T HSD17B14 Missense_Mutation p.R108H 0.37 deleterious(0.04) possibly_damaging(0.478) TCGA-AM-5821-01 19 49377402 49377402 C T PPP1R15A Silent p.C304C 0.39 TCGA-AM-5821-01 19 49656860 49656860 C T HRC Silent p.E545E 0.37 TCGA-AM-5821-01 19 49841967 49841967 G T CD37 Missense_Mutation p.C153F 0.27 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 19 49925761 49925761 C T PTH2 Silent p.S89S 0.30 TCGA-AM-5821-01 19 50059027 50059027 C T NOSIP Missense_Mutation p.R296Q 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-AM-5821-01 19 50099147 50099147 G A PRR12 Missense_Mutation p.A519T 0.36 possibly_damaging(0.695) TCGA-AM-5821-01 19 50397643 50397643 T G IL4I1 Missense_Mutation p.H172P 0.17 deleterious(0) benign(0.334) TCGA-AM-5821-01 19 50720975 50720975 T C MYH14 Missense_Mutation p.V170A 0.09 deleterious(0) possibly_damaging(0.597) TCGA-AM-5821-01 19 52222967 52222967 G A HAS1 Missense_Mutation p.A65V 0.25 tolerated(0.23) benign(0.007) TCGA-AM-5821-01 19 52394414 52394414 T - ZNF649 Frame_Shift_Del p.G326Afs*37 0.15 TCGA-AM-5821-01 19 5244448 5244448 G A PTPRS Missense_Mutation p.A345V 0.28 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 19 53612015 53612015 G A ZNF415 Missense_Mutation p.A428V 0.24 tolerated(0.45) possibly_damaging(0.555) TCGA-AM-5821-01 19 53657015 53657015 T A ZNF347 5'UTR 0.34 TCGA-AM-5821-01 19 53761655 53761655 T - VN1R2 Frame_Shift_Del p.F10Lfs*6 0.34 TCGA-AM-5821-01 19 54660648 54660648 C T LENG1 Missense_Mutation p.G143D 0.13 tolerated(0.42) possibly_damaging(0.597) TCGA-AM-5821-01 19 55247587 55247587 G A KIR3DL3 3'UTR 0.37 TCGA-AM-5821-01 19 55888959 55888959 A G TMEM190 Splice_Site p.X32_splice 0.17 TCGA-AM-5821-01 19 56189059 56189059 C T EPN1 Missense_Mutation p.T64M 0.15 deleterious_low_confidence(0) unknown(0) TCGA-AM-5821-01 19 57175391 57175391 G A ZNF835 Silent p.C392C 0.09 TCGA-AM-5821-01 19 57705287 57705287 G T ZNF264 Missense_Mutation p.E26D 0.28 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 19 57910688 57910688 T - ZNF548 Frame_Shift_Del p.F358Lfs*163 0.15 TCGA-AM-5821-01 19 58083805 58083805 A G ZNF416 Silent p.T489T 0.13 TCGA-AM-5821-01 19 58084837 58084837 T G ZNF416 Silent p.A145A 0.31 TCGA-AM-5821-01 19 58319737 58319738 CA - ZNF552 Nonsense_Mutation p.C298* 0.32 TCGA-AM-5821-01 19 58863897 58863897 G A A1BG Missense_Mutation p.S122L 0.33 deleterious(0.03) possibly_damaging(0.549) TCGA-AM-5821-01 19 58879872 58879872 G A ZNF837 Silent p.C276C 0.24 TCGA-AM-5821-01 19 58904801 58904801 G A RPS5 Missense_Mutation p.G132R 0.38 deleterious(0.04) benign(0.005) TCGA-AM-5821-01 19 58967595 58967595 C T ZNF324B Silent p.A428A 0.12 TCGA-AM-5821-01 19 59061964 59061964 T C TRIM28 3'UTR 0.09 TCGA-AM-5821-01 19 6669996 6669996 G A TNFSF14 Missense_Mutation p.R29W 0.15 deleterious(0) probably_damaging(0.949) TCGA-AM-5821-01 19 7030646 7030646 T G MBD3L5 Silent p.S8S 0.14 TCGA-AM-5821-01 19 7592456 7592456 G A MCOLN1 Missense_Mutation p.D208N 0.31 tolerated(0.4) benign(0.016) TCGA-AM-5821-01 19 7974730 7974730 G A MAP2K7 Missense_Mutation p.R72H 0.26 deleterious(0.01) possibly_damaging(0.871) TCGA-AM-5821-01 19 805112 805112 C A PTBP1 Missense_Mutation p.R273S 0.38 deleterious(0.01) benign(0.413) TCGA-AM-5821-01 19 8974096 8974096 G A MUC16 Missense_Mutation p.A14192V 0.41 probably_damaging(0.958) TCGA-AM-5821-01 19 9018559 9018559 C A MUC16 Missense_Mutation p.A12539S 0.28 benign(0.095) TCGA-AM-5821-01 1 10322018 10322018 A G KIF1B Missense_Mutation p.Y140C 0.29 deleterious(0.02) possibly_damaging(0.74) TCGA-AM-5821-01 1 103381235 103381235 T G COL11A1 Missense_Mutation p.E1256D 0.12 unknown(0) TCGA-AM-5821-01 1 10720462 10720462 A G CASZ1 Missense_Mutation p.S213P 0.12 tolerated_low_confidence(0.1) benign(0.007) TCGA-AM-5821-01 1 107600688 107600688 C T PRMT6 3'UTR 0.19 TCGA-AM-5821-01 1 109808446 109808446 G T CELSR2 Missense_Mutation p.E1939D 0.20 tolerated(0.36) benign(0.05) TCGA-AM-5821-01 1 110050927 110050927 G T AMIGO1 Missense_Mutation p.P203H 0.28 tolerated(0.13) benign(0.004) TCGA-AM-5821-01 1 110594455 110594455 G A STRIP1 Missense_Mutation p.A738T 0.12 deleterious(0.02) possibly_damaging(0.487) TCGA-AM-5821-01 1 11083336 11083336 C G TARDBP 3'UTR 0.13 TCGA-AM-5821-01 1 111146245 111146245 C T KCNA2 Missense_Mutation p.G387E 0.22 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 1 1149134 1149134 G T TNFRSF4 Silent p.S59S 0.20 TCGA-AM-5821-01 1 115164530 115164530 T C DENND2C Missense_Mutation p.K405E 0.43 deleterious(0.01) possibly_damaging(0.497) TCGA-AM-5821-01 1 115280176 115280176 G A CSDE1 Silent p.C152C 0.16 TCGA-AM-5821-01 1 11562081 11562081 T C PTCHD2 Silent p.F344F 0.24 TCGA-AM-5821-01 1 11595162 11595162 C T PTCHD2 Silent p.P1210P 0.31 TCGA-AM-5821-01 1 11596558 11596558 T C PTCHD2 Missense_Mutation p.Y1332H 0.25 deleterious(0) possibly_damaging(0.908) TCGA-AM-5821-01 1 117122168 117122168 C T IGSF3 Silent p.P1080P 0.41 TCGA-AM-5821-01 1 1177964 1177964 C T FAM132A Silent p.A291A 0.35 TCGA-AM-5821-01 1 118042153 118042153 C T MAN1A2 Nonsense_Mutation p.Q552* 0.33 TCGA-AM-5821-01 1 120548005 120548005 C T NOTCH2 Missense_Mutation p.C121Y 0.15 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 1 12157180 12157180 C T TNFRSF8 Silent p.C58C 0.11 TCGA-AM-5821-01 1 12164522 12164522 G A TNFRSF8 Missense_Mutation p.V119I 0.32 tolerated(0.19) benign(0.016) TCGA-AM-5821-01 1 12837464 12837464 G A PRAMEF12 Missense_Mutation p.A392T 0.30 tolerated(0.54) benign(0.005) TCGA-AM-5821-01 1 144994617 144994617 C T PDE4DIP Missense_Mutation p.A39T 0.07 tolerated(0.11) benign(0.139) TCGA-AM-5821-01 1 146672934 146672934 A C FMO5 Missense_Mutation p.F328C 0.15 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 1 146758079 146758079 A C CHD1L Missense_Mutation p.D708A 0.28 tolerated(0.14) benign(0.003) TCGA-AM-5821-01 1 1470669 1470669 T C TMEM240 3'UTR 0.27 TCGA-AM-5821-01 1 150131249 150131249 C - PLEKHO1 Frame_Shift_Del p.Q256Rfs*6 0.27 TCGA-AM-5821-01 1 150691977 150691977 G A HORMAD1 Missense_Mutation p.A2V 0.20 deleterious(0.02) possibly_damaging(0.831) TCGA-AM-5821-01 1 151146876 151146876 C T TMOD4 Missense_Mutation p.E91K 0.32 tolerated(0.07) benign(0.313) TCGA-AM-5821-01 1 151262391 151262391 G - ZNF687 Frame_Shift_Del p.P960Lfs*23 0.32 TCGA-AM-5821-01 1 152084330 152084330 G A TCHH Missense_Mutation p.R455C 0.22 unknown(0) TCGA-AM-5821-01 1 152085187 152085187 C T TCHH Missense_Mutation p.R169H 0.31 unknown(0) TCGA-AM-5821-01 1 152732484 152732484 T C KPRP Silent p.Y140Y 0.28 TCGA-AM-5821-01 1 153390655 153390655 C T S100A7A Silent p.L33L 0.19 TCGA-AM-5821-01 1 153659747 153659747 T C NPR1 Silent p.D669D 0.33 TCGA-AM-5821-01 1 153905728 153905728 C T DENND4B Missense_Mutation p.R1133H 0.27 tolerated(0.1) benign(0.001) TCGA-AM-5821-01 1 153906302 153906302 G T DENND4B Missense_Mutation p.P996H 0.20 deleterious(0.02) possibly_damaging(0.554) TCGA-AM-5821-01 1 153914685 153914685 A C DENND4B Missense_Mutation p.L263R 0.10 deleterious(0) possibly_damaging(0.88) TCGA-AM-5821-01 1 153941442 153941442 C T CREB3L4 Missense_Mutation p.L71F 0.14 tolerated(0.3) benign(0.078) TCGA-AM-5821-01 1 154072499 154072499 G A NUP210L Missense_Mutation p.T647I 0.31 deleterious(0.02) possibly_damaging(0.798) TCGA-AM-5821-01 1 154300640 154300641 - C ATP8B2 Frame_Shift_Ins p.E44Rfs*9 0.11 TCGA-AM-5821-01 1 15441044 15441044 C T KAZN Silent p.N747N 0.38 TCGA-AM-5821-01 1 155209448 155209448 G - GBA Frame_Shift_Del p.P138Lfs*62 0.08 TCGA-AM-5821-01 1 155227123 155227123 A G SCAMP3 Silent p.D244D 0.26 TCGA-AM-5821-01 1 156046386 156046386 T G MEX3A Missense_Mutation p.Q514H 0.32 deleterious(0.03) probably_damaging(0.991) TCGA-AM-5821-01 1 156046435 156046435 C T MEX3A Missense_Mutation p.C498Y 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-AM-5821-01 1 156438029 156438029 C T MEF2D Missense_Mutation p.S437N 0.26 tolerated(1) probably_damaging(0.985) TCGA-AM-5821-01 1 156622654 156622654 C T BCAN Nonsense_Mutation p.R638* 0.10 TCGA-AM-5821-01 1 156642516 156642516 T A NES Missense_Mutation p.R488S 0.35 tolerated(0.26) benign(0.118) TCGA-AM-5821-01 1 156642695 156642695 G A NES Missense_Mutation p.R429W 0.30 tolerated(1) benign(0) TCGA-AM-5821-01 1 156834543 156834543 G A NTRK1 Missense_Mutation p.R104H 0.21 tolerated(0.15) benign(0.001) TCGA-AM-5821-01 1 157514099 157514099 G T FCRL5 Missense_Mutation p.P266H 0.20 tolerated(0.47) benign(0.07) TCGA-AM-5821-01 1 157557096 157557096 G A FCRL4 Missense_Mutation p.H273Y 0.29 tolerated(0.27) benign(0.002) TCGA-AM-5821-01 1 158626376 158626376 C A SPTA1 Missense_Mutation p.R959L 0.25 deleterious(0.01) benign(0.262) TCGA-AM-5821-01 1 158669716 158669716 C G OR6K2 Missense_Mutation p.V243L 0.22 deleterious(0.01) benign(0.013) TCGA-AM-5821-01 1 158906924 158906925 - G PYHIN1 Frame_Shift_Ins p.D77Rfs*4 0.23 TCGA-AM-5821-01 1 159558546 159558546 G T APCS 3'UTR 0.11 TCGA-AM-5821-01 1 159912845 159912846 - G IGSF9 Frame_Shift_Ins p.L52Pfs*27 0.26 TCGA-AM-5821-01 1 160062744 160062744 G A IGSF8 Missense_Mutation p.R428W 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-AM-5821-01 1 160098512 160098512 A G ATP1A2 Missense_Mutation p.E363G 0.22 deleterious(0.01) probably_damaging(0.92) TCGA-AM-5821-01 1 160265586 160265586 T G COPA Missense_Mutation p.T815P 0.18 tolerated(0.24) benign(0.012) TCGA-AM-5821-01 1 161049401 161049401 G A PVRL4 Missense_Mutation p.R140W 0.43 deleterious(0.01) possibly_damaging(0.832) TCGA-AM-5821-01 1 161695840 161695840 G A FCRLB Silent p.A179A 0.22 TCGA-AM-5821-01 1 161697465 161697465 C T FCRLB 3'UTR 0.26 TCGA-AM-5821-01 1 16200811 16200812 - A SPEN Intron 0.10 TCGA-AM-5821-01 1 16258907 16258907 G A SPEN Missense_Mutation p.A2058T 0.12 benign(0.002) TCGA-AM-5821-01 1 166039354 166039354 C A FAM78B 3'UTR 0.32 TCGA-AM-5821-01 1 167095235 167095235 G - DUSP27 Frame_Shift_Del p.G291Dfs*22 0.38 TCGA-AM-5821-01 1 167343421 167343421 T C POU2F1 Missense_Mutation p.V160A 0.36 tolerated_low_confidence(1) unknown(0) TCGA-AM-5821-01 1 167847774 167847774 G A ADCY10 Missense_Mutation p.A439V 0.27 deleterious(0.01) benign(0.222) TCGA-AM-5821-01 1 167871011 167871011 G A ADCY10 Nonsense_Mutation p.R109* 0.36 TCGA-AM-5821-01 1 169511900 169511900 G A F5 Silent p.L810L 0.15 TCGA-AM-5821-01 1 169697355 169697355 G A SELE Nonsense_Mutation p.R375* 0.28 TCGA-AM-5821-01 1 171251131 171251131 A G FMO1 Missense_Mutation p.E281G 0.50 deleterious(0.01) probably_damaging(0.917) TCGA-AM-5821-01 1 171604977 171604977 C T MYOC 3'UTR 0.19 TCGA-AM-5821-01 1 171759754 171759754 T G METTL13 Missense_Mutation p.L491R 0.10 tolerated(0.08) benign(0.027) TCGA-AM-5821-01 1 171810921 171810921 C T DNM3 Missense_Mutation p.A42V 0.28 deleterious(0) probably_damaging(0.977) TCGA-AM-5821-01 1 172437625 172437625 G T C1orf105 Missense_Mutation p.R148M 0.12 deleterious(0) possibly_damaging(0.702) TCGA-AM-5821-01 1 173754326 173754326 C A KLHL20 Silent p.R591R 0.38 TCGA-AM-5821-01 1 179821836 179821836 T - TOR1AIP2 5'UTR 0.26 TCGA-AM-5821-01 1 180063391 180063391 A C CEP350 Silent p.T2717T 0.15 TCGA-AM-5821-01 1 18023927 18023927 G A ARHGEF10L 3'UTR 0.13 TCGA-AM-5821-01 1 180904879 180904879 C A KIAA1614 Missense_Mutation p.L612M 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-AM-5821-01 1 183083773 183083773 G A LAMC1 Missense_Mutation p.A377T 0.11 deleterious(0) possibly_damaging(0.493) TCGA-AM-5821-01 1 184671985 184671985 C T EDEM3 Silent p.E783E 0.30 TCGA-AM-5821-01 1 1849796 1849796 C T TMEM52 Missense_Mutation p.R82Q 0.20 deleterious(0.03) probably_damaging(0.983) TCGA-AM-5821-01 1 186057781 186057781 C T HMCN1 Silent p.S3207S 0.38 TCGA-AM-5821-01 1 186277936 186277936 A - PRG4 Frame_Shift_Del p.K1030Nfs*14 0.13 TCGA-AM-5821-01 1 190068079 190068079 C T BRINP3 Missense_Mutation p.R457H 0.44 tolerated(0.55) benign(0.001) TCGA-AM-5821-01 1 19212027 19212027 C T ALDH4A1 Silent p.A131A 0.22 TCGA-AM-5821-01 1 192335145 192335145 G A RGS21 Missense_Mutation p.C117Y 0.09 deleterious(0.01) benign(0.325) TCGA-AM-5821-01 1 19523648 19523648 A G UBR4 Silent p.S335S 0.16 TCGA-AM-5821-01 1 196295983 196295983 A G KCNT2 Missense_Mutation p.Y714H 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-AM-5821-01 1 19630541 19630541 C - AKR7A2 3'UTR 0.25 TCGA-AM-5821-01 1 196670640 196670640 A G CFH Intron 0.50 TCGA-AM-5821-01 1 200610196 200610196 T C DDX59 3'Flank 0.40 TCGA-AM-5821-01 1 201182066 201182066 C T IGFN1 Missense_Mutation p.A2682V 0.38 benign(0.063) TCGA-AM-5821-01 1 201282447 201282447 C T PKP1 Missense_Mutation p.R154C 0.32 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 1 201618272 201618272 C - NAV1 Frame_Shift_Del p.L161Wfs*33 0.37 TCGA-AM-5821-01 1 201915402 201915402 T A LMOD1 Missense_Mutation p.T23S 0.32 probably_damaging(0.995) TCGA-AM-5821-01 1 201924649 201924649 G C TIMM17A 5'UTR 0.18 TCGA-AM-5821-01 1 202287327 202287327 C T LGR6 Silent p.Y632Y 0.42 TCGA-AM-5821-01 1 204234135 204234135 G - PLEKHA6 Frame_Shift_Del p.L106Sfs*2 0.28 TCGA-AM-5821-01 1 205073024 205073024 C T RBBP5 Silent p.R161R 0.29 TCGA-AM-5821-01 1 205811282 205811282 C A PM20D1 Missense_Mutation p.R322M 0.09 deleterious(0.02) possibly_damaging(0.771) TCGA-AM-5821-01 1 207498002 207498002 T C CD55 Missense_Mutation p.C129R 0.08 deleterious(0) probably_damaging(0.994) TCGA-AM-5821-01 1 207500166 207500166 G A CD55 Silent p.P216P 0.28 TCGA-AM-5821-01 1 207700405 207700405 G A CR1 Missense_Mutation p.G368D 0.58 deleterious(0.03) probably_damaging(0.986) TCGA-AM-5821-01 1 209849437 209849437 C - G0S2 3'UTR 0.14 TCGA-AM-5821-01 1 21133884 21133884 G A EIF4G3 Silent p.G1568G 0.14 TCGA-AM-5821-01 1 214557604 214557604 C T PTPN14 Missense_Mutation p.A532T 0.27 tolerated(0.22) benign(0.003) TCGA-AM-5821-01 1 21564731 21564731 G A ECE1 Missense_Mutation p.L429F 0.12 tolerated(0.11) possibly_damaging(0.843) TCGA-AM-5821-01 1 215812567 215812567 C A USH2A Missense_Mutation p.Q4994H 0.34 probably_damaging(0.976) TCGA-AM-5821-01 1 221912922 221912922 A G DUSP10 Silent p.A55A 0.10 TCGA-AM-5821-01 1 225706963 225706963 G A ENAH Nonsense_Mutation p.R247* 0.12 TCGA-AM-5821-01 1 228246746 228246746 G T WNT3A Missense_Mutation p.E213D 0.12 deleterious(0.02) probably_damaging(0.93) TCGA-AM-5821-01 1 228495870 228495870 T C OBSCN Silent p.D5132D 0.34 TCGA-AM-5821-01 1 22965815 22965815 A - C1QA Frame_Shift_Del p.D220Tfs*62 0.12 TCGA-AM-5821-01 1 230820945 230820945 T C COG2 Missense_Mutation p.L448P 0.26 deleterious(0) probably_damaging(0.968) TCGA-AM-5821-01 1 230820946 230820946 G T COG2 Silent p.L448L 0.26 TCGA-AM-5821-01 1 230824295 230824295 G A COG2 Missense_Mutation p.R594Q 0.34 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 1 231829613 231829613 C T DISC1 Missense_Mutation p.R37W 0.09 deleterious(0) probably_damaging(0.968) TCGA-AM-5821-01 1 232944656 232944656 A G MAP10 3'UTR 0.24 TCGA-AM-5821-01 1 23419460 23419460 G A LUZP1 Missense_Mutation p.A432V 0.20 tolerated(0.32) benign(0.031) TCGA-AM-5821-01 1 235331836 235331836 G A ARID4B 3'UTR 0.31 TCGA-AM-5821-01 1 235956908 235956908 G A LYST Silent p.C1337C 0.11 TCGA-AM-5821-01 1 236750777 236750777 T C HEATR1 Missense_Mutation p.H547R 0.35 tolerated(0.38) benign(0.005) TCGA-AM-5821-01 1 236882306 236882306 C T ACTN2 Silent p.G118G 0.25 TCGA-AM-5821-01 1 237015915 237015915 T - MTR Frame_Shift_Del p.F598Sfs*14 0.14 TCGA-AM-5821-01 1 23724330 23724330 G A TCEA3 Missense_Mutation p.R188W 0.31 deleterious(0) possibly_damaging(0.874) TCGA-AM-5821-01 1 237791188 237791188 C T RYR2 Missense_Mutation p.A2083V 0.20 benign(0.05) TCGA-AM-5821-01 1 237794758 237794758 C T RYR2 Missense_Mutation p.H2158Y 0.23 probably_damaging(0.992) TCGA-AM-5821-01 1 238046090 238046090 C A ZP4 Missense_Mutation p.G483C 0.30 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 1 240256592 240256592 G A FMN2 Missense_Mutation p.A395T 0.07 unknown(0) TCGA-AM-5821-01 1 240286626 240286626 C T FMN2 Missense_Mutation p.T588M 0.21 unknown(0) TCGA-AM-5821-01 1 241797836 241797836 G A CHML Silent p.V411V 0.31 TCGA-AM-5821-01 1 243327916 243327916 G A CEP170 Missense_Mutation p.L1116F 0.34 deleterious(0.04) probably_damaging(0.951) TCGA-AM-5821-01 1 24465170 24465170 C T IL22RA1 Silent p.Q26Q 0.26 TCGA-AM-5821-01 1 2461133 2461133 G T HES5 Nonsense_Mutation p.Y92* 0.25 TCGA-AM-5821-01 1 246940202 246940202 C A RP11-439E19.10 3'Flank 0.26 TCGA-AM-5821-01 1 247267303 247267303 T C ZNF669 Missense_Mutation p.T67A 0.37 tolerated(1) benign(0.006) TCGA-AM-5821-01 1 248113044 248113044 G T OR2L8 Missense_Mutation p.E295D 0.33 tolerated(0.25) benign(0.206) TCGA-AM-5821-01 1 248569305 248569305 G T OR2T1 Nonsense_Mutation p.E4* 0.19 TCGA-AM-5821-01 1 248569400 248569400 T G OR2T1 Nonsense_Mutation p.Y35* 0.12 TCGA-AM-5821-01 1 249143032 249143032 A G ZNF672 3'UTR 0.38 TCGA-AM-5821-01 1 2537014 2537014 C A MMEL1 Missense_Mutation p.G267C 0.09 deleterious(0.05) possibly_damaging(0.867) TCGA-AM-5821-01 1 26610933 26610933 A G UBXN11 Missense_Mutation p.L298P 0.14 deleterious(0.01) benign(0.393) TCGA-AM-5821-01 1 27097622 27097622 A - ARID1A Frame_Shift_Del p.K1072Nfs*21 0.29 TCGA-AM-5821-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.28 TCGA-AM-5821-01 1 28316222 28316225 AAGT - EYA3 Frame_Shift_Del p.L467Ffs*10 0.40 TCGA-AM-5821-01 1 29475705 29475705 G A SRSF4 Silent p.S234S 0.22 TCGA-AM-5821-01 1 29475709 29475709 C T SRSF4 Missense_Mutation p.R233Q 0.21 deleterious(0.03) benign(0.238) TCGA-AM-5821-01 1 29647253 29647253 G A PTPRU Silent p.T1258T 0.13 TCGA-AM-5821-01 1 31897646 31897648 CTT - SERINC2 In_Frame_Del p.F120del 0.26 TCGA-AM-5821-01 1 3382610 3382610 G A ARHGEF16 Intron 0.45 TCGA-AM-5821-01 1 3645894 3645894 C T TP73 Nonsense_Mutation p.R360* 0.13 TCGA-AM-5821-01 1 36643125 36643126 - AAC MAP7D1 Intron 0.25 TCGA-AM-5821-01 1 36808784 36808784 G A STK40 Intron 0.27 TCGA-AM-5821-01 1 38158426 38158426 G A CDCA8 Missense_Mutation p.A22T 0.31 tolerated(0.21) benign(0.031) TCGA-AM-5821-01 1 39384765 39384765 G T RHBDL2 Silent p.A40A 0.28 TCGA-AM-5821-01 1 40038228 40038228 T C PABPC4 Missense_Mutation p.D75G 0.32 deleterious(0) probably_damaging(0.944) TCGA-AM-5821-01 1 40366493 40366493 A G MYCL Intron 0.41 TCGA-AM-5821-01 1 40998830 40998830 C T ZNF684 5'UTR 0.29 TCGA-AM-5821-01 1 43042857 43042857 A C CCDC30 Missense_Mutation p.K341T 0.10 deleterious(0) possibly_damaging(0.888) TCGA-AM-5821-01 1 44160509 44160509 G A KDM4A Missense_Mutation p.D872N 0.30 tolerated(0.05) probably_damaging(0.989) TCGA-AM-5821-01 1 44422948 44422948 T C IPO13 Silent p.G451G 0.15 TCGA-AM-5821-01 1 44477310 44477310 G T SLC6A9 Missense_Mutation p.L58I 0.13 tolerated_low_confidence(0.66) benign(0.006) TCGA-AM-5821-01 1 44596188 44596188 G T KLF17 Missense_Mutation p.E310D 0.11 tolerated(0.08) benign(0.446) TCGA-AM-5821-01 1 50666555 50666555 G A ELAVL4 Missense_Mutation p.S286N 0.15 tolerated(0.51) benign(0.011) TCGA-AM-5821-01 1 50666682 50666682 C T ELAVL4 Silent p.N328N 0.32 TCGA-AM-5821-01 1 57420409 57420409 T - C8B Frame_Shift_Del p.K161Nfs*19 0.28 TCGA-AM-5821-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.38 TCGA-AM-5821-01 1 63001188 63001188 A G DOCK7 Missense_Mutation p.V1165A 0.29 tolerated(0.74) benign(0.001) TCGA-AM-5821-01 1 65141087 65141087 G A CACHD1 Missense_Mutation p.D860N 0.26 tolerated(0.39) benign(0.027) TCGA-AM-5821-01 1 65325833 65325833 G - JAK1 Frame_Shift_Del p.P430Rfs*2 0.29 TCGA-AM-5821-01 1 66058375 66058375 A - LEPR Frame_Shift_Del p.G179Afs*35 0.23 TCGA-AM-5821-01 1 68564481 68564481 A - WLS Intron 0.23 TCGA-AM-5821-01 1 70697708 70697708 T - SRSF11 Intron 0.34 TCGA-AM-5821-01 1 71513301 71513301 G T PTGER3 5'UTR 0.33 TCGA-AM-5821-01 1 71544163 71544163 A G ZRANB2 Silent p.S65S 0.28 TCGA-AM-5821-01 1 78001646 78001646 G A AK5 Missense_Mutation p.A515T 0.19 tolerated(0.35) benign(0.001) TCGA-AM-5821-01 1 78395050 78395050 A G NEXN Missense_Mutation p.Y305C 0.13 tolerated(0.16) benign(0.325) TCGA-AM-5821-01 1 79102746 79102746 G A IFI44L Silent p.E302E 0.18 TCGA-AM-5821-01 1 79472390 79472390 C T ELTD1 5'UTR 0.19 TCGA-AM-5821-01 1 82407724 82407724 A - LPHN2 Intron 0.22 TCGA-AM-5821-01 1 82432284 82432284 A C LPHN2 Silent p.P763P 0.13 TCGA-AM-5821-01 1 8422799 8422799 C T RERE Missense_Mutation p.A616T 0.23 probably_damaging(0.997) TCGA-AM-5821-01 1 84373183 84373183 G A TTLL7 Missense_Mutation p.H650Y 0.11 tolerated(0.7) benign(0.019) TCGA-AM-5821-01 1 85127980 85127980 T G SSX2IP Missense_Mutation p.E276D 0.14 tolerated(0.07) probably_damaging(0.97) TCGA-AM-5821-01 1 86836734 86836734 A G ODF2L Silent p.N341N 0.33 TCGA-AM-5821-01 1 86847949 86847949 G A ODF2L Silent p.N200N 0.30 TCGA-AM-5821-01 1 86934706 86934706 G - CLCA1 Frame_Shift_Del p.A19Pfs*2 0.09 TCGA-AM-5821-01 1 87100081 87100081 C A RP4-651E10.4 Intron 0.28 TCGA-AM-5821-01 1 89850881 89850881 A - GBP6 Frame_Shift_Del p.N587Mfs*18 0.14 TCGA-AM-5821-01 1 9100166 9100166 C T SLC2A5 Silent p.R218R 0.40 TCGA-AM-5821-01 1 9164669 9164669 C A GPR157 Missense_Mutation p.G273C 0.10 deleterious(0.04) probably_damaging(0.995) TCGA-AM-5821-01 1 91726860 91726860 T C HFM1 Missense_Mutation p.D1432G 0.30 deleterious_low_confidence(0.01) benign(0.424) TCGA-AM-5821-01 1 92633491 92633493 TCT - KIAA1107 In_Frame_Del p.L28del 0.32 TCGA-AM-5821-01 1 92852582 92852582 G T RPAP2 3'UTR 0.17 TCGA-AM-5821-01 1 93169000 93169000 A - EVI5 Frame_Shift_Del p.F216Lfs*15 0.13 TCGA-AM-5821-01 1 94360190 94360190 A G GCLM Missense_Mutation p.L212S 0.18 deleterious(0) probably_damaging(0.958) TCGA-AM-5821-01 1 94466604 94466604 C T ABCA4 Missense_Mutation p.V2114M 0.34 tolerated(0.16) benign(0.011) TCGA-AM-5821-01 1 95712443 95712444 - T RWDD3 3'UTR 0.25 TCGA-AM-5821-01 1 9671842 9671842 C T TMEM201 Silent p.A599A 0.37 TCGA-AM-5821-01 20 18163864 18163864 G A CSRP2BP Missense_Mutation p.A636T 0.13 deleterious(0.05) benign(0.217) TCGA-AM-5821-01 20 18168076 18168076 C T CSRP2BP Silent p.H774H 0.31 TCGA-AM-5821-01 20 18790696 18790696 G A C20orf78 Silent p.S60S 0.32 TCGA-AM-5821-01 20 20600013 20600013 G A RALGAPA2 Missense_Mutation p.R483C 0.37 deleterious(0) probably_damaging(0.978) TCGA-AM-5821-01 20 21329048 21329048 C T XRN2 Missense_Mutation p.R615W 0.25 deleterious(0.01) probably_damaging(0.96) TCGA-AM-5821-01 20 23064441 23064441 G - CD93 3'UTR 0.19 TCGA-AM-5821-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.38 TCGA-AM-5821-01 20 2381041 2381041 G A TGM6 Missense_Mutation p.V314M 0.18 deleterious(0) benign(0.393) TCGA-AM-5821-01 20 24524024 24524024 C T SYNDIG1 Silent p.G97G 0.12 TCGA-AM-5821-01 20 251742 251742 C A C20orf96 3'UTR 0.33 TCGA-AM-5821-01 20 25442253 25442254 - T NINL Frame_Shift_Ins p.L1201Tfs*2 0.29 TCGA-AM-5821-01 20 29612028 29612028 C T FRG1B 5'UTR 0.32 TCGA-AM-5821-01 20 3147820 3147820 G - LZTS3 5'UTR 0.38 TCGA-AM-5821-01 20 32005673 32005673 C T SNTA1 Missense_Mutation p.V185I 0.20 tolerated(0.71) benign(0.034) TCGA-AM-5821-01 20 3208329 3208329 G A SLC4A11 3'UTR 0.41 TCGA-AM-5821-01 20 32212681 32212681 C T CBFA2T2 Silent p.L277L 0.25 TCGA-AM-5821-01 20 33345744 33345744 C T NCOA6 Silent p.Q269Q 0.31 TCGA-AM-5821-01 20 33862277 33862277 C T MMP24 Silent p.N601N 0.12 TCGA-AM-5821-01 20 34611595 34611595 T C CNBD2 Silent p.N443N 0.12 TCGA-AM-5821-01 20 35173307 35173307 A G MYL9 Missense_Mutation p.K7R 0.28 tolerated(0.1) possibly_damaging(0.636) TCGA-AM-5821-01 20 35444137 35444137 G - SOGA1 Frame_Shift_Del p.Q570Rfs*87 0.33 TCGA-AM-5821-01 20 3556550 3556550 C T ATRN Silent p.C723C 0.10 TCGA-AM-5821-01 20 37580182 37580182 T - FAM83D Frame_Shift_Del p.F290Lfs*8 0.17 TCGA-AM-5821-01 20 39991041 39991041 A G EMILIN3 Silent p.L390L 0.32 TCGA-AM-5821-01 20 41101087 41101087 G A PTPRT Silent p.T423T 0.26 TCGA-AM-5821-01 20 41306603 41306603 G A PTPRT Silent p.P352P 0.25 TCGA-AM-5821-01 20 42088475 42088475 T C SRSF6 Silent p.R107R 0.09 TCGA-AM-5821-01 20 43850901 43850901 A T SEMG2 Missense_Mutation p.T210S 0.10 tolerated(0.08) probably_damaging(0.994) TCGA-AM-5821-01 20 44572039 44572039 C T PCIF1 Silent p.A294A 0.33 TCGA-AM-5821-01 20 44657945 44657945 C T SLC12A5 Intron 0.41 TCGA-AM-5821-01 20 44708056 44708056 G A NCOA5 Missense_Mutation p.T3M 0.12 deleterious_low_confidence(0.03) benign(0.356) TCGA-AM-5821-01 20 45003938 45003939 - G ELMO2 Frame_Shift_Ins p.G335Wfs*48 0.16 TCGA-AM-5821-01 20 45133332 45133332 T G ZNF334 Missense_Mutation p.E23D 0.28 deleterious(0) probably_damaging(0.987) TCGA-AM-5821-01 20 47691908 47691908 T - CSE1L Frame_Shift_Del p.F397Lfs*5 0.22 TCGA-AM-5821-01 20 47871180 47871180 C T ZNFX1 Nonsense_Mutation p.W937* 0.14 TCGA-AM-5821-01 20 49576937 49576937 T C MOCS3 3'UTR 0.14 TCGA-AM-5821-01 20 50407164 50407164 T C SALL4 Missense_Mutation p.T620A 0.14 tolerated(0.31) benign(0.001) TCGA-AM-5821-01 20 56186930 56186930 C T ZBP1 Missense_Mutation p.G243R 0.12 tolerated(0.06) benign(0.005) TCGA-AM-5821-01 20 56284596 56284596 C T PMEPA1 Missense_Mutation p.A15T 0.43 tolerated_low_confidence(0.2) benign(0.043) TCGA-AM-5821-01 20 57244510 57244510 G A STX16 Splice_Site p.X186_splice 0.41 TCGA-AM-5821-01 20 60581737 60581737 C T TAF4 Silent p.P684P 0.37 TCGA-AM-5821-01 20 60585187 60585187 G T TAF4 Missense_Mutation p.A559D 0.18 possibly_damaging(0.477) TCGA-AM-5821-01 20 60639509 60639509 G - TAF4 Frame_Shift_Del p.P453Qfs*14 0.39 TCGA-AM-5821-01 20 60793711 60793711 C T HRH3 Missense_Mutation p.A85T 0.45 deleterious(0.01) possibly_damaging(0.805) TCGA-AM-5821-01 20 61300363 61300363 G T SLCO4A1 Missense_Mutation p.G653V 0.19 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 20 61512412 61512412 G A DIDO1 Silent p.D1632D 0.33 TCGA-AM-5821-01 20 62223431 62223431 G A GMEB2 Missense_Mutation p.A299V 0.36 tolerated(0.13) probably_damaging(0.987) TCGA-AM-5821-01 20 62576010 62576010 C T UCKL1 Silent p.E244E 0.31 TCGA-AM-5821-01 20 62838994 62838994 G A MYT1 Missense_Mutation p.A149T 0.09 benign(0.032) TCGA-AM-5821-01 20 6750999 6750999 C A BMP2 Missense_Mutation p.P76T 0.43 deleterious(0) probably_damaging(0.995) TCGA-AM-5821-01 20 8698375 8698375 A - PLCB1 Frame_Shift_Del p.N466Ifs*79 0.10 TCGA-AM-5821-01 20 9560928 9560928 C A PAK7 Missense_Mutation p.R285M 0.15 deleterious(0) probably_damaging(0.993) TCGA-AM-5821-01 21 10914362 10914362 C T TPTE Splice_Site p.X452_splice 0.08 TCGA-AM-5821-01 21 10942745 10942745 C A TPTE Missense_Mutation p.R232S 0.11 deleterious(0) possibly_damaging(0.602) TCGA-AM-5821-01 21 30407196 30407196 G T USP16 Missense_Mutation p.K93N 0.17 deleterious(0.05) benign(0.255) TCGA-AM-5821-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.24 TCGA-AM-5821-01 21 34003882 34003882 C T SYNJ1 Missense_Mutation p.R1421Q 0.33 tolerated_low_confidence(0.11) benign(0.033) TCGA-AM-5821-01 21 34099160 34099160 G - SYNJ1 Frame_Shift_Del p.P55Hfs*6 0.16 TCGA-AM-5821-01 21 34399336 34399336 C T OLIG2 Missense_Mutation p.R56C 0.20 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-AM-5821-01 21 34925023 34925023 T C SON Silent p.P1162P 0.17 TCGA-AM-5821-01 21 36164882 36164882 G A RUNX1 Silent p.S331S 0.29 TCGA-AM-5821-01 21 38444815 38444815 T - PIGP Frame_Shift_Del p.M25Wfs*21 0.14 TCGA-AM-5821-01 21 40550450 40550450 T - PSMG1 Frame_Shift_Del p.T194Hfs*13 0.10 TCGA-AM-5821-01 21 44108060 44108060 C T PDE9A Silent p.D58D 0.28 TCGA-AM-5821-01 21 44836678 44836678 A C SIK1 Missense_Mutation p.C766G 0.33 deleterious_low_confidence(0.02) benign(0) TCGA-AM-5821-01 21 46918391 46918391 G A COL18A1 Intron 0.30 TCGA-AM-5821-01 21 47544808 47544808 G A COL6A2 Missense_Mutation p.G582S 0.33 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 21 47735410 47735410 C A C21orf58 Missense_Mutation p.R141M 0.12 deleterious(0) possibly_damaging(0.693) TCGA-AM-5821-01 21 47773200 47773200 G T PCNT Missense_Mutation p.G547W 0.18 probably_damaging(0.959) TCGA-AM-5821-01 21 47851723 47851723 A G PCNT Missense_Mutation p.Q2782R 0.26 benign(0.403) TCGA-AM-5821-01 21 47865265 47865265 C T PCNT 3'UTR 0.16 TCGA-AM-5821-01 21 47952066 47952066 C A DIP2A Missense_Mutation p.D407E 0.28 tolerated(0.16) probably_damaging(0.946) TCGA-AM-5821-01 21 48084340 48084340 G A PRMT2 3'UTR 0.28 TCGA-AM-5821-01 22 17488858 17488858 C T GAB4 Silent p.S49S 0.33 TCGA-AM-5821-01 22 17684610 17684610 T G CECR1 Missense_Mutation p.N199T 0.15 tolerated(0.41) benign(0.005) TCGA-AM-5821-01 22 18022286 18022286 C - CECR2 Frame_Shift_Del p.N800Tfs*59 0.32 TCGA-AM-5821-01 22 18209464 18209464 T C BCL2L13 Missense_Mutation p.S208P 0.13 tolerated(0.18) benign(0.025) TCGA-AM-5821-01 22 20457157 20457157 T G RIMBP3 Missense_Mutation p.E1382A 0.12 deleterious(0.01) benign(0.38) TCGA-AM-5821-01 22 21799231 21799231 G A HIC2 Missense_Mutation p.R16H 0.19 tolerated_low_confidence(0.24) possibly_damaging(0.522) TCGA-AM-5821-01 22 23494663 23494665 GGT - RAB36 In_Frame_Del p.V129del 0.30 TCGA-AM-5821-01 22 23653970 23653970 G A BCR Missense_Mutation p.R1090H 0.34 deleterious(0) possibly_damaging(0.812) TCGA-AM-5821-01 22 23915422 23915422 G T IGLL1 3'UTR 0.24 TCGA-AM-5821-01 22 24621030 24621030 G T GGT5 Silent p.A517A 0.22 TCGA-AM-5821-01 22 26707840 26707840 C T SEZ6L Silent p.P596P 0.40 TCGA-AM-5821-01 22 26884150 26884150 A G SRRD Missense_Mutation p.T136A 0.14 tolerated(0.44) benign(0.006) TCGA-AM-5821-01 22 26887018 26887018 T A SRRD Missense_Mutation p.N264K 0.12 deleterious(0.04) benign(0.09) TCGA-AM-5821-01 22 29444421 29444421 C T ZNRF3 Silent p.C319C 0.39 TCGA-AM-5821-01 22 29707467 29707468 - C GAS2L1 3'UTR 0.36 TCGA-AM-5821-01 22 30951053 30951053 C T GAL3ST1 Missense_Mutation p.A387T 0.20 tolerated(0.13) benign(0.108) TCGA-AM-5821-01 22 31008968 31008968 C T TCN2 Silent p.H122H 0.29 TCGA-AM-5821-01 22 31090005 31090005 T C OSBP2 5'Flank 0.35 TCGA-AM-5821-01 22 31495737 31495737 G A SMTN Missense_Mutation p.D820N 0.09 deleterious(0.02) probably_damaging(0.972) TCGA-AM-5821-01 22 31531857 31531857 C T PLA2G3 Missense_Mutation p.R461Q 0.31 tolerated(0.37) benign(0.004) TCGA-AM-5821-01 22 31672914 31672914 C T LIMK2 Nonsense_Mutation p.Q617* 0.36 TCGA-AM-5821-01 22 32754025 32754025 G A RFPL3 5'UTR 0.27 TCGA-AM-5821-01 22 33780261 33780261 G A LARGE Missense_Mutation p.R308W 0.14 deleterious(0) probably_damaging(0.976) TCGA-AM-5821-01 22 35729411 35729411 C T TOM1 Silent p.A316A 0.21 TCGA-AM-5821-01 22 37261006 37261006 A G NCF4 Missense_Mutation p.I55V 0.32 tolerated(0.1) possibly_damaging(0.833) TCGA-AM-5821-01 22 38038655 38038655 G T SH3BP1 Intron 0.19 TCGA-AM-5821-01 22 38617447 38617447 G A TMEM184B 3'UTR 0.31 TCGA-AM-5821-01 22 38884016 38884016 C T DDX17 Missense_Mutation p.A518T 0.09 deleterious(0) probably_damaging(0.99) TCGA-AM-5821-01 22 39427887 39448265 22:39427887-39448265 - APOBEC3F large deletion 0.33 TCGA-AM-5821-01 22 40708591 40708591 G - TNRC6B Frame_Shift_Del p.G1508Vfs*8 0.31 TCGA-AM-5821-01 22 40814881 40814881 G A MKL1 Missense_Mutation p.R521C 0.21 tolerated(0.08) probably_damaging(0.988) TCGA-AM-5821-01 22 42093694 42093694 G A C22orf46 3'UTR 0.33 TCGA-AM-5821-01 22 43023622 43023622 G A CYB5R3 Missense_Mutation p.A212V 0.28 deleterious(0) probably_damaging(0.936) TCGA-AM-5821-01 22 43460299 43460299 C T TTLL1 Missense_Mutation p.V179M 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-AM-5821-01 22 43568491 43568491 T C TTLL12 Missense_Mutation p.I471V 0.30 tolerated(0.55) benign(0.026) TCGA-AM-5821-01 22 44392215 44392215 T A SAMM50 Intron 0.13 TCGA-AM-5821-01 22 45309728 45309728 G A PHF21B Missense_Mutation p.R269W 0.18 tolerated(0.06) benign(0.006) TCGA-AM-5821-01 22 45580472 45580472 G A NUP50 Missense_Mutation p.R448Q 0.32 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 22 46136313 46136313 C T ATXN10 Silent p.C356C 0.12 TCGA-AM-5821-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.14 TCGA-AM-5821-01 22 47308082 47308082 T C TBC1D22A Missense_Mutation p.I338T 0.29 tolerated(0.15) benign(0.011) TCGA-AM-5821-01 22 50636545 50636545 G A TRABD Missense_Mutation p.V296M 0.30 deleterious(0.01) probably_damaging(1) TCGA-AM-5821-01 22 50861997 50861997 G A PPP6R2 Missense_Mutation p.S361N 0.22 deleterious(0.04) benign(0.073) TCGA-AM-5821-01 22 50895487 50895487 C T SBF1 Missense_Mutation p.A1294T 0.42 tolerated(0.44) benign(0.022) TCGA-AM-5821-01 22 50988626 50988626 C A KLHDC7B 3'UTR 0.31 TCGA-AM-5821-01 2 107002789 107002789 A G PLGLA RNA 0.13 TCGA-AM-5821-01 2 109746121 109746121 C T SH3RF3 Missense_Mutation p.A42V 0.13 tolerated_low_confidence(0.1) benign(0.012) TCGA-AM-5821-01 2 110049036 110049036 G A SH3RF3 Missense_Mutation p.E495K 0.30 deleterious(0) possibly_damaging(0.796) TCGA-AM-5821-01 2 110375723 110375723 A - SOWAHC 3'UTR 0.27 TCGA-AM-5821-01 2 110849256 110849256 G A MALL Missense_Mutation p.S66L 0.06 tolerated(0.14) benign(0.408) TCGA-AM-5821-01 2 111562924 111562924 G A ACOXL Silent p.L235L 0.28 TCGA-AM-5821-01 2 113404685 113404685 A G SLC20A1 Missense_Mutation p.M94V 0.14 tolerated(0.24) benign(0.004) TCGA-AM-5821-01 2 11758592 11758592 G A GREB1 Silent p.T1197T 0.13 TCGA-AM-5821-01 2 118866048 118866049 AC - INSIG2 3'UTR 0.35 TCGA-AM-5821-01 2 120404537 120404537 C T PCDP1 Silent p.C743C 0.13 TCGA-AM-5821-01 2 121736124 121736124 C T GLI2 Missense_Mutation p.R495W 0.38 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 2 121747829 121747829 T G GLI2 Missense_Mutation p.Y1447D 0.18 deleterious(0) probably_damaging(0.994) TCGA-AM-5821-01 2 128699612 128699613 - T SAP130 Frame_Shift_Ins p.V1074Sfs*26 0.26 TCGA-AM-5821-01 2 130910946 130910946 G A SMPD4 Silent p.P696P 0.37 TCGA-AM-5821-01 2 131520403 131520403 T G AMER3 Missense_Mutation p.V253G 0.15 deleterious(0) possibly_damaging(0.811) TCGA-AM-5821-01 2 131812907 131812907 G - FAM168B Frame_Shift_Del p.P138Lfs*25 0.32 TCGA-AM-5821-01 2 132290249 132290249 C - CCDC74A Frame_Shift_Del p.P259Qfs*2 0.27 TCGA-AM-5821-01 2 133540300 133540300 G A NCKAP5 Missense_Mutation p.H1362Y 0.38 deleterious(0.02) possibly_damaging(0.897) TCGA-AM-5821-01 2 136513160 136513160 C T UBXN4 Missense_Mutation p.A136V 0.19 tolerated(0.25) benign(0.022) TCGA-AM-5821-01 2 136547302 136547302 G A LCT Missense_Mutation p.A1801V 0.10 deleterious(0.01) possibly_damaging(0.71) TCGA-AM-5821-01 2 138030109 138030109 C T THSD7B Missense_Mutation p.A758V 0.14 tolerated(0.21) possibly_damaging(0.682) TCGA-AM-5821-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.56 TCGA-AM-5821-01 2 152424871 152424871 G - NEB Frame_Shift_Del p.L5899Cfs*51 0.27 TCGA-AM-5821-01 2 152830290 152830290 G T CACNB4 Intron 0.14 TCGA-AM-5821-01 2 153529111 153529111 T - PRPF40A Frame_Shift_Del p.K411Sfs*40 0.13 TCGA-AM-5821-01 2 155158002 155158002 T G GALNT13 Silent p.T352T 0.13 TCGA-AM-5821-01 2 158157504 158157504 G T GALNT5 Missense_Mutation p.S811I 0.15 deleterious(0.01) possibly_damaging(0.908) TCGA-AM-5821-01 2 160189095 160189095 T G BAZ2B Missense_Mutation p.T1967P 0.16 probably_damaging(0.972) TCGA-AM-5821-01 2 160843721 160843721 A - PLA2R1 Frame_Shift_Del p.H662Tfs*26 0.12 TCGA-AM-5821-01 2 165984502 165984502 A G SCN3A Missense_Mutation p.M1011T 0.23 deleterious(0) benign(0.085) TCGA-AM-5821-01 2 166771848 166771848 T C TTC21B Silent p.Q667Q 0.23 TCGA-AM-5821-01 2 167085386 167085386 T G SCN9A Missense_Mutation p.N1330H 0.31 deleterious(0.05) probably_damaging(0.999) TCGA-AM-5821-01 2 16745337 16745337 T G FAM49A Missense_Mutation p.Q73P 0.12 tolerated(0.09) benign(0.005) TCGA-AM-5821-01 2 170799095 170799095 T - UBR3 Frame_Shift_Del p.L920Cfs*18 0.09 TCGA-AM-5821-01 2 171699127 171699127 G A GAD1 Intron 0.12 TCGA-AM-5821-01 2 171822458 171822458 G A GORASP2 Missense_Mutation p.A393T 0.16 tolerated_low_confidence(0.39) benign(0.047) TCGA-AM-5821-01 2 172952994 172952994 G A DLX1 3'UTR 0.27 TCGA-AM-5821-01 2 173855548 173855548 C T RAPGEF4 Missense_Mutation p.A462V 0.37 deleterious(0) probably_damaging(0.997) TCGA-AM-5821-01 2 179417544 179417544 G A TTN Missense_Mutation p.A30028V 0.33 TCGA-AM-5821-01 2 179429632 179429632 G C TTN Missense_Mutation p.P27076R 0.25 TCGA-AM-5821-01 2 179437886 179437886 C T TTN Missense_Mutation p.G24325R 0.32 TCGA-AM-5821-01 2 179444198 179444198 C T TTN Intron 0.30 TCGA-AM-5821-01 2 179462332 179462332 G A TTN Silent p.G19159G 0.16 TCGA-AM-5821-01 2 179566769 179566769 G T TTN Missense_Mutation p.P10179H 0.10 TCGA-AM-5821-01 2 179583966 179583966 C T TTN Missense_Mutation p.D8051N 0.27 TCGA-AM-5821-01 2 179605441 179605441 C A TTN Missense_Mutation p.E4173D 0.27 TCGA-AM-5821-01 2 179610186 179610186 G A TTN Intron 0.50 TCGA-AM-5821-01 2 180819705 180819705 T A CWC22 Missense_Mutation p.K505N 0.24 deleterious(0.05) benign(0.049) TCGA-AM-5821-01 2 182543304 182543304 C T NEUROD1 Missense_Mutation p.R95H 0.13 deleterious(0) probably_damaging(0.962) TCGA-AM-5821-01 2 186689170 186689170 A C FSIP2 Missense_Mutation p.E6901D 0.23 probably_damaging(0.992) TCGA-AM-5821-01 2 189870081 189870081 A G COL3A1 Silent p.E979E 0.41 TCGA-AM-5821-01 2 191524176 191524176 A G NAB1 Missense_Mutation p.S92G 0.14 tolerated(0.43) possibly_damaging(0.868) TCGA-AM-5821-01 2 197636628 197636628 G A GTF3C3 Missense_Mutation p.L702F 0.28 tolerated(0.06) benign(0.142) TCGA-AM-5821-01 2 20135333 20135333 G A WDR35 Missense_Mutation p.R827W 0.35 deleterious(0) possibly_damaging(0.667) TCGA-AM-5821-01 2 202744856 202744856 C T CDK15 Silent p.S388S 0.31 TCGA-AM-5821-01 2 202900144 202900144 C T FZD7 Silent p.G258G 0.22 TCGA-AM-5821-01 2 202965146 202965147 - C AC079354.1 Frame_Shift_Ins p.G379Wfs*33 0.34 TCGA-AM-5821-01 2 203419994 203419994 C T BMPR2 Missense_Mutation p.R536C 0.15 deleterious(0.02) probably_damaging(0.912) TCGA-AM-5821-01 2 203980748 203980748 C T NBEAL1 Silent p.D820D 0.26 TCGA-AM-5821-01 2 205986337 205986337 G A PARD3B Missense_Mutation p.A277T 0.10 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 2 207174671 207174671 G A ZDBF2 Missense_Mutation p.V1807I 0.16 tolerated(0.1) benign(0) TCGA-AM-5821-01 2 207638984 207638984 C T FASTKD2 Silent p.G430G 0.24 TCGA-AM-5821-01 2 207814376 207814376 A C CPO Missense_Mutation p.K35T 0.30 tolerated(0.23) benign(0.035) TCGA-AM-5821-01 2 210778578 210778578 T A UNC80 Missense_Mutation p.I1582N 0.32 possibly_damaging(0.518) TCGA-AM-5821-01 2 210798574 210798574 C - UNC80 Frame_Shift_Del p.C1944Afs*12 0.24 TCGA-AM-5821-01 2 210887882 210887882 C T KANSL1L Missense_Mutation p.A919T 0.37 tolerated(0.43) benign(0.009) TCGA-AM-5821-01 2 216197151 216197151 C T ATIC Silent p.N245N 0.15 TCGA-AM-5821-01 2 217005909 217005909 A T XRCC5 Missense_Mutation p.E448V 0.39 deleterious(0.03) benign(0.193) TCGA-AM-5821-01 2 219247818 219247818 C - SLC11A1 Frame_Shift_Del p.T48Kfs*21 0.12 TCGA-AM-5821-01 2 220149649 220149649 T C DNAJB2 Silent p.G305G 0.12 TCGA-AM-5821-01 2 220309442 220309442 C T SPEG Silent p.D152D 0.27 TCGA-AM-5821-01 2 220349121 220349122 - C SPEG Frame_Shift_Ins p.R2315Qfs*8 0.32 TCGA-AM-5821-01 2 222320333 222320335 AGA - EPHA4 In_Frame_Del p.L550del 0.20 TCGA-AM-5821-01 2 223168904 223168904 C T CCDC140 Missense_Mutation p.R95C 0.13 tolerated_low_confidence(0.16) possibly_damaging(0.835) TCGA-AM-5821-01 2 223918277 223918277 G T KCNE4 3'UTR 0.27 TCGA-AM-5821-01 2 227886875 227886875 G T COL4A4 Missense_Mutation p.P1369T 0.22 unknown(0) TCGA-AM-5821-01 2 228163401 228163401 C T COL4A3 Missense_Mutation p.A1252V 0.13 unknown(0) TCGA-AM-5821-01 2 228337193 228337193 A C AGFG1 Missense_Mutation p.D19A 0.13 deleterious(0) benign(0.098) TCGA-AM-5821-01 2 230652336 230652337 - A TRIP12 Frame_Shift_Ins p.Y1552Lfs*6 0.10 TCGA-AM-5821-01 2 231775367 231775367 C T GPR55 Missense_Mutation p.S104N 0.24 tolerated(0.75) benign(0.071) TCGA-AM-5821-01 2 233164817 233164817 G A DIS3L2 Missense_Mutation p.R576H 0.27 deleterious(0.03) benign(0.077) TCGA-AM-5821-01 2 233344944 233344944 G A ECEL1 Silent p.S749S 0.26 TCGA-AM-5821-01 2 233348187 233348187 C T ECEL1 Missense_Mutation p.G482D 0.18 tolerated(0.86) benign(0.005) TCGA-AM-5821-01 2 234106827 234106827 T C INPP5D Missense_Mutation p.L915P 0.28 tolerated(0.15) benign(0.431) TCGA-AM-5821-01 2 236949416 236949416 G A AGAP1 Missense_Mutation p.E608K 0.38 deleterious(0.02) benign(0.364) TCGA-AM-5821-01 2 237490022 237490022 T C ACKR3 Missense_Mutation p.L305P 0.15 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 2 241808309 241808309 C T AGXT Silent p.T9T 0.19 TCGA-AM-5821-01 2 242011020 242011020 C T SNED1 Missense_Mutation p.H1207Y 0.28 deleterious(0.05) benign(0.042) TCGA-AM-5821-01 2 24239078 24239078 C T MFSD2B Missense_Mutation p.A92V 0.39 deleterious(0) probably_damaging(0.941) TCGA-AM-5821-01 2 242438686 242438686 C T STK25 Missense_Mutation p.A191T 0.30 deleterious(0.01) possibly_damaging(0.585) TCGA-AM-5821-01 2 24262186 24262186 A G C2orf44 Missense_Mutation p.V60A 0.24 deleterious(0) probably_damaging(0.93) TCGA-AM-5821-01 2 24360793 24360793 T C FAM228B Silent p.Y61Y 0.30 TCGA-AM-5821-01 2 27663995 27663995 T C NRBP1 Missense_Mutation p.V444A 0.42 deleterious(0) benign(0.005) TCGA-AM-5821-01 2 30480353 30480353 C T LBH Missense_Mutation p.P62S 0.39 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 2 36749354 36749354 A G CRIM1 Missense_Mutation p.I776V 0.10 tolerated(1) benign(0.001) TCGA-AM-5821-01 2 37121059 37121059 C A STRN Missense_Mutation p.G305C 0.34 deleterious(0) possibly_damaging(0.764) TCGA-AM-5821-01 2 38297793 38297793 A - CYP1B1 3'UTR 0.24 TCGA-AM-5821-01 2 38301763 38301763 C T CYP1B1 Missense_Mutation p.V257I 0.28 tolerated(0.57) benign(0.001) TCGA-AM-5821-01 2 38537479 38537479 A G ATL2 Silent p.T305T 0.08 TCGA-AM-5821-01 2 42275908 42275908 G T PKDCC Missense_Mutation p.R190L 0.38 deleterious(0.02) benign(0.236) TCGA-AM-5821-01 2 42490401 42490401 C A EML4 Missense_Mutation p.P199H 0.12 tolerated(0.08) benign(0.195) TCGA-AM-5821-01 2 47288067 47288067 C T TTC7A Missense_Mutation p.A771V 0.14 deleterious(0.02) possibly_damaging(0.788) TCGA-AM-5821-01 2 49195930 49195930 T - FSHR Frame_Shift_Del p.K254Sfs*44 0.21 TCGA-AM-5821-01 2 54482400 54482400 A C TSPYL6 Missense_Mutation p.F297V 0.26 tolerated(0.06) possibly_damaging(0.69) TCGA-AM-5821-01 2 55191263 55191263 C - EML6 Frame_Shift_Del p.R1767Efs*19 0.29 TCGA-AM-5821-01 2 55746929 55746930 - G CCDC104 5'UTR 0.46 TCGA-AM-5821-01 2 71060956 71060956 C T CD207 Missense_Mutation p.S129N 0.31 tolerated(0.4) benign(0.007) TCGA-AM-5821-01 2 71615815 71615815 G A ZNF638 Intron 0.16 TCGA-AM-5821-01 2 71742845 71742845 G A DYSF Silent p.T284T 0.23 TCGA-AM-5821-01 2 72359615 72359615 C T CYP26B1 Missense_Mutation p.G427D 0.31 deleterious(0.03) probably_damaging(0.968) TCGA-AM-5821-01 2 74686661 74686661 G A WBP1 Intron 0.32 TCGA-AM-5821-01 2 74733124 74733124 T C PCGF1 Missense_Mutation p.Y162C 0.28 tolerated(0.06) possibly_damaging(0.628) TCGA-AM-5821-01 2 74734776 74734776 C - PCGF1 Frame_Shift_Del p.G7Afs*7 0.33 TCGA-AM-5821-01 2 74762531 74762531 T G LOXL3 Silent p.G489G 0.39 TCGA-AM-5821-01 2 85577263 85577263 T C RETSAT Silent p.P233P 0.30 TCGA-AM-5821-01 2 9098635 9098636 - A MBOAT2 Frame_Shift_Ins p.C71Lfs*52 0.23 TCGA-AM-5821-01 2 95715423 95715423 G T MAL Missense_Mutation p.R120M 0.22 deleterious(0.03) possibly_damaging(0.537) TCGA-AM-5821-01 2 95942744 95942744 C T PROM2 Missense_Mutation p.A236V 0.18 tolerated(0.14) benign(0.011) TCGA-AM-5821-01 2 95947944 95947944 C T PROM2 Silent p.Y566Y 0.29 TCGA-AM-5821-01 2 97039141 97039141 G A NCAPH 3'UTR 0.10 TCGA-AM-5821-01 2 98543914 98543914 C T TMEM131 Missense_Mutation p.R75H 0.12 tolerated(0.67) benign(0.033) TCGA-AM-5821-01 2 99438402 99438402 C T KIAA1211L Silent p.A778A 0.18 TCGA-AM-5821-01 2 99767350 99767350 G A C2ORF15 3'UTR 0.15 TCGA-AM-5821-01 3 10342747 10342747 T C SEC13 3'UTR 0.35 TCGA-AM-5821-01 3 10443967 10443967 C - ATP2B2 Frame_Shift_Del p.A155Pfs*59 0.26 TCGA-AM-5821-01 3 108269929 108269929 C - KIAA1524 3'UTR 0.34 TCGA-AM-5821-01 3 11061919 11061919 C T SLC6A1 Silent p.C164C 0.33 TCGA-AM-5821-01 3 111394229 111394229 T C PLCXD2 Missense_Mutation p.L46P 0.25 deleterious(0.03) possibly_damaging(0.56) TCGA-AM-5821-01 3 111688710 111688710 T C PHLDB2 Silent p.R1163R 0.08 TCGA-AM-5821-01 3 112643996 112643996 T C CD200R1 Missense_Mutation p.I272V 0.16 tolerated(0.4) benign(0.25) TCGA-AM-5821-01 3 112715782 112715783 - A GTPBP8 Frame_Shift_Ins p.T206Nfs*10 0.33 TCGA-AM-5821-01 3 112999487 112999487 A G BOC Missense_Mutation p.D762G 0.18 deleterious(0) probably_damaging(0.991) TCGA-AM-5821-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.34 TCGA-AM-5821-01 3 114070570 114070570 G A ZBTB20 Missense_Mutation p.R119C 0.31 deleterious(0) probably_damaging(0.993) TCGA-AM-5821-01 3 115439688 115439688 G T GAP43 Missense_Mutation p.G262C 0.26 tolerated(0.08) probably_damaging(0.933) TCGA-AM-5821-01 3 116163835 116163835 A G LSAMP Missense_Mutation p.V15A 0.18 deleterious(0.02) benign(0.031) TCGA-AM-5821-01 3 123021953 123021953 G A ADCY5 Silent p.G891G 0.30 TCGA-AM-5821-01 3 125271334 125271334 A C OSBPL11 Missense_Mutation p.Y449D 0.36 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 3 126062414 126062414 C T KLF15 3'UTR 0.30 TCGA-AM-5821-01 3 126726697 126726697 G A PLXNA1 Missense_Mutation p.V685M 0.33 tolerated(0.23) benign(0.031) TCGA-AM-5821-01 3 128525247 128525247 G C RAB7A Missense_Mutation p.Q71H 0.26 tolerated(0.08) benign(0.152) TCGA-AM-5821-01 3 129156748 129156748 C A MBD4 Missense_Mutation p.E50D 0.33 deleterious(0.04) possibly_damaging(0.676) TCGA-AM-5821-01 3 130893672 130893672 G T NEK11 Intron 0.19 TCGA-AM-5821-01 3 132056385 132056385 T C ACPP Missense_Mutation p.L181P 0.35 deleterious(0.03) probably_damaging(0.985) TCGA-AM-5821-01 3 133494330 133494330 C T TF Silent p.L581L 0.18 TCGA-AM-5821-01 3 13395589 13395589 G A NUP210 Missense_Mutation p.R783C 0.35 deleterious(0.01) benign(0.099) TCGA-AM-5821-01 3 138192428 138192428 G A ESYT3 Missense_Mutation p.R763H 0.24 deleterious(0) probably_damaging(0.996) TCGA-AM-5821-01 3 138665353 138665353 G A FOXL2 Missense_Mutation p.A71V 0.25 deleterious(0) possibly_damaging(0.573) TCGA-AM-5821-01 3 142840376 142840376 G - CHST2 Frame_Shift_Del p.R242Afs*60 0.20 TCGA-AM-5821-01 3 14551339 14551339 G T GRIP2 RNA 0.12 TCGA-AM-5821-01 3 14552769 14552769 G A GRIP2 RNA 0.26 TCGA-AM-5821-01 3 147113805 147113806 - A ZIC4 Frame_Shift_Ins p.W225Lfs*43 0.14 TCGA-AM-5821-01 3 147128307 147128307 C T ZIC1 Silent p.D136D 0.36 TCGA-AM-5821-01 3 148924112 148924112 A G CP Missense_Mutation p.F351L 0.16 tolerated(1) benign(0.045) TCGA-AM-5821-01 3 14964653 14964653 G A FGD5 Missense_Mutation p.R1303Q 0.19 tolerated(0.14) probably_damaging(0.994) TCGA-AM-5821-01 3 150289746 150289746 A - EIF2A Frame_Shift_Del p.N273Mfs*7 0.25 TCGA-AM-5821-01 3 150845669 150845669 C T MED12L Missense_Mutation p.P152S 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-AM-5821-01 3 151458612 151458612 C T AADACL2 Missense_Mutation p.A106V 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-AM-5821-01 3 155838625 155838625 C T KCNAB1 Silent p.C75C 0.16 TCGA-AM-5821-01 3 159605683 159605683 G A IQCJ-SCHIP1 Missense_Mutation p.V471I 0.21 tolerated(0.37) probably_damaging(0.977) TCGA-AM-5821-01 3 167727973 167727973 A G GOLIM4 3'UTR 0.31 TCGA-AM-5821-01 3 169496801 169496801 C T MYNN Missense_Mutation p.A171V 0.12 tolerated(0.18) benign(0.001) TCGA-AM-5821-01 3 174814997 174814997 C T NAALADL2 Missense_Mutation p.A154V 0.10 tolerated(0.21) benign(0.002) TCGA-AM-5821-01 3 175042060 175042060 A G NAALADL2 Missense_Mutation p.M346V 0.13 tolerated(1) benign(0.004) TCGA-AM-5821-01 3 178919185 178919185 G T PIK3CA Missense_Mutation p.A224S 0.14 tolerated(0.14) benign(0.044) TCGA-AM-5821-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.32 tolerated(0.11) possibly_damaging(0.529) TCGA-AM-5821-01 3 179123152 179123152 C T GNB4 Missense_Mutation p.A248T 0.21 tolerated(0.07) benign(0.414) TCGA-AM-5821-01 3 183273292 183273292 G A KLHL6 Silent p.D50D 0.12 TCGA-AM-5821-01 3 184107163 184107163 G T CHRD Nonsense_Mutation p.E941* 0.33 TCGA-AM-5821-01 3 184922395 184922395 G A EHHADH Missense_Mutation p.A240V 0.38 deleterious(0) possibly_damaging(0.864) TCGA-AM-5821-01 3 186389555 186389555 C T HRG Nonsense_Mutation p.R179* 0.24 TCGA-AM-5821-01 3 193081901 193081901 T C ATP13A5 Missense_Mutation p.T78A 0.33 deleterious(0.04) benign(0.217) TCGA-AM-5821-01 3 194409269 194409273 AAAAT - FAM43A 3'UTR 0.16 TCGA-AM-5821-01 3 195709097 195709097 C T SDHAP1 RNA 0.21 TCGA-AM-5821-01 3 197482699 197482699 A G FYTTD1 Intron 0.19 TCGA-AM-5821-01 3 197790643 197790643 C A ANKRD18DP RNA 0.28 TCGA-AM-5821-01 3 27387653 27387653 C T NEK10 Missense_Mutation p.A63T 0.42 tolerated_low_confidence(0.68) benign(0.001) TCGA-AM-5821-01 3 27463158 27463158 G A SLC4A7 Missense_Mutation p.P451L 0.23 deleterious(0.01) probably_damaging(1) TCGA-AM-5821-01 3 33087656 33087656 C T GLB1 Missense_Mutation p.D342N 0.27 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 3 33539981 33539981 T C CLASP2 3'UTR 0.20 TCGA-AM-5821-01 3 37034067 37034067 G A EPM2AIP1 Nonsense_Mutation p.R168* 0.26 TCGA-AM-5821-01 3 38050789 38050789 C T PLCD1 Missense_Mutation p.R548H 0.19 deleterious(0) possibly_damaging(0.802) TCGA-AM-5821-01 3 38156473 38156473 G T DLEC1 Splice_Site p.X1262_splice 0.13 TCGA-AM-5821-01 3 38793865 38793865 G A SCN10A Missense_Mutation p.R534W 0.36 deleterious(0) possibly_damaging(0.677) TCGA-AM-5821-01 3 39142553 39142553 C T GORASP1 Missense_Mutation p.R130H 0.12 tolerated(0.31) benign(0.019) TCGA-AM-5821-01 3 39374977 39374977 A - CCR8 3'Flank 0.20 TCGA-AM-5821-01 3 41266128 41266128 C - CTNNB1 Frame_Shift_Del p.T42Kfs*5 0.35 TCGA-AM-5821-01 3 41267184 41267184 T G CTNNB1 Missense_Mutation p.I256M 0.29 deleterious(0.02) probably_damaging(0.952) TCGA-AM-5821-01 3 41860998 41860998 C T ULK4 Missense_Mutation p.E589K 0.19 deleterious(0) possibly_damaging(0.786) TCGA-AM-5821-01 3 45557610 45557610 C T LARS2 Missense_Mutation p.T629M 0.40 deleterious(0.01) probably_damaging(0.953) TCGA-AM-5821-01 3 46307575 46307575 G A CCR3 Missense_Mutation p.R330Q 0.34 tolerated(0.15) benign(0.191) TCGA-AM-5821-01 3 46501208 46501208 G A LTF Missense_Mutation p.R49C 0.32 deleterious(0.04) possibly_damaging(0.571) TCGA-AM-5821-01 3 46569017 46569017 G T LRRC2 Silent p.P276P 0.36 TCGA-AM-5821-01 3 46902287 46902287 G A MYL3 Silent p.D62D 0.31 TCGA-AM-5821-01 3 47044542 47044542 T C NBEAL2 Missense_Mutation p.L1852P 0.12 tolerated(0.27) benign(0.162) TCGA-AM-5821-01 3 47061302 47061302 G A SETD2 Missense_Mutation p.A2460V 0.14 deleterious(0) possibly_damaging(0.787) TCGA-AM-5821-01 3 47281514 47281514 C A KIF9 Intron 0.43 TCGA-AM-5821-01 3 48730418 48730418 G A IP6K2 Missense_Mutation p.R133C 0.13 deleterious(0.02) probably_damaging(0.971) TCGA-AM-5821-01 3 49065926 49065926 T C IMPDH2 Missense_Mutation p.T63A 0.14 tolerated(0.31) benign(0.031) TCGA-AM-5821-01 3 49569648 49569648 C A DAG1 Missense_Mutation p.S568R 0.35 tolerated(0.51) benign(0.126) TCGA-AM-5821-01 3 49701902 49701902 C T BSN Silent p.A3885A 0.27 TCGA-AM-5821-01 3 49719336 49719336 C A APEH Silent p.S513S 0.28 TCGA-AM-5821-01 3 49742415 49742415 A G RNF123 Splice_Site p.X654_splice 0.11 TCGA-AM-5821-01 3 49742587 49742587 G A RNF123 Silent p.L710L 0.29 TCGA-AM-5821-01 3 49836259 49836259 C T CDHR4 Silent p.Q165Q 0.13 TCGA-AM-5821-01 3 49933782 49933782 C T MST1R Missense_Mutation p.R832Q 0.36 tolerated(0.16) benign(0.004) TCGA-AM-5821-01 3 51433501 51433501 G A VPRBP 3'UTR 0.09 TCGA-AM-5821-01 3 51671414 51671414 G A RAD54L2 Missense_Mutation p.R526H 0.30 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 3 52858487 52858487 G T ITIH4 Missense_Mutation p.P324Q 0.32 tolerated(0.09) benign(0.392) TCGA-AM-5821-01 3 53845220 53845220 C A CACNA1D Silent p.A2111A 0.18 TCGA-AM-5821-01 3 54596940 54596940 T - CACNA2D3 Frame_Shift_Del p.F221Lfs*40 0.23 TCGA-AM-5821-01 3 55504335 55504335 C T WNT5A Missense_Mutation p.V310M 0.39 tolerated(0.13) benign(0.017) TCGA-AM-5821-01 3 57132442 57132442 A G IL17RD Missense_Mutation p.V430A 0.14 deleterious(0.01) probably_damaging(0.94) TCGA-AM-5821-01 3 57438701 57438701 G A DNAH12 Nonsense_Mutation p.R1196* 0.33 TCGA-AM-5821-01 3 57509606 57509606 T C DNAH12 Missense_Mutation p.D59G 0.27 deleterious(0.01) benign(0.167) TCGA-AM-5821-01 3 58899479 58899479 T A C3orf67 Missense_Mutation p.I44F 0.29 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 3 63965629 63965629 G A ATXN7 Missense_Mutation p.V180I 0.33 tolerated(0.38) benign(0.013) TCGA-AM-5821-01 3 66457890 66457890 G A LRIG1 Missense_Mutation p.R321W 0.31 deleterious(0.01) probably_damaging(0.959) TCGA-AM-5821-01 3 69104477 69104477 A - UBA3 3'UTR 0.21 TCGA-AM-5821-01 3 73433413 73433413 C T PDZRN3 Silent p.P768P 0.12 TCGA-AM-5821-01 3 77147398 77147398 C T ROBO2 Missense_Mutation p.R115C 0.10 deleterious(0) unknown(0) TCGA-AM-5821-01 3 77684162 77684162 C T ROBO2 Missense_Mutation p.A1317V 0.17 tolerated_low_confidence(0.17) benign(0.001) TCGA-AM-5821-01 3 78663944 78663944 C T ROBO1 Missense_Mutation p.R1430Q 0.34 tolerated(0.11) probably_damaging(0.945) TCGA-AM-5821-01 3 81699007 81699007 A G GBE1 Silent p.V165V 0.25 TCGA-AM-5821-01 3 86010721 86010721 G A CADM2 Silent p.T291T 0.34 TCGA-AM-5821-01 3 8671398 8671398 G A SSUH2 Silent p.C180C 0.35 TCGA-AM-5821-01 3 87313620 87313620 A G POU1F1 Missense_Mutation p.L112S 0.28 deleterious(0) possibly_damaging(0.812) TCGA-AM-5821-01 3 9057396 9057396 G A SRGAP3 Silent p.D566D 0.24 TCGA-AM-5821-01 3 9911903 9911903 T C CIDEC Missense_Mutation p.D114G 0.37 tolerated(0.3) benign(0.014) TCGA-AM-5821-01 3 99649830 99649830 G C FILIP1L Missense_Mutation p.A12G 0.29 tolerated(0.5) benign(0) TCGA-AM-5821-01 4 100203698 100203698 G A ADH1A Silent p.G211G 0.17 TCGA-AM-5821-01 4 100869558 100869559 - A H2AFZ 3'UTR 0.26 TCGA-AM-5821-01 4 103174528 103174528 G A SLC39A8 3'UTR 0.38 TCGA-AM-5821-01 4 10447116 10447116 A G ZNF518B Silent p.P279P 0.29 TCGA-AM-5821-01 4 106640247 106640247 A T GSTCD Missense_Mutation p.T153S 0.10 tolerated(0.88) benign(0.098) TCGA-AM-5821-01 4 110788941 110788941 G A LRIT3 Missense_Mutation p.R245Q 0.33 tolerated(0.09) benign(0.249) TCGA-AM-5821-01 4 113353357 113353357 C T ALPK1 Missense_Mutation p.A885V 0.36 tolerated(0.21) benign(0.007) TCGA-AM-5821-01 4 113507656 113507656 T C C4orf21 Silent p.P1287P 0.11 TCGA-AM-5821-01 4 119036107 119036107 T A NDST3 Missense_Mutation p.F406I 0.26 deleterious(0.01) possibly_damaging(0.828) TCGA-AM-5821-01 4 119203025 119203025 G C PRSS12 3'UTR 0.31 TCGA-AM-5821-01 4 119978565 119978565 C T SYNPO2 Missense_Mutation p.R1088C 0.16 deleterious(0.03) benign(0.048) TCGA-AM-5821-01 4 122872796 122872796 C T TRPC3 Missense_Mutation p.V14M 0.28 deleterious_low_confidence(0) benign(0.029) TCGA-AM-5821-01 4 123283461 123283461 T - KIAA1109 3'UTR 0.24 TCGA-AM-5821-01 4 1245165 1245166 - C CTBP1 5'Flank 0.26 TCGA-AM-5821-01 4 126329689 126329689 G A FAT4 Missense_Mutation p.G1887D 0.13 probably_damaging(0.938) TCGA-AM-5821-01 4 128949823 128949823 A G C4orf29 Missense_Mutation p.Q298R 0.32 tolerated(0.23) benign(0.007) TCGA-AM-5821-01 4 134111443 134111443 T A PCDH10 3'UTR 0.30 TCGA-AM-5821-01 4 135248451 135248451 C T RP11-400D2.2 RNA 0.25 TCGA-AM-5821-01 4 146567304 146567304 C T MMAA Silent p.T243T 0.35 TCGA-AM-5821-01 4 146686789 146686789 G A ZNF827 Nonsense_Mutation p.Q988* 0.27 TCGA-AM-5821-01 4 147560415 147560415 G A POU4F2 Silent p.A41A 0.33 TCGA-AM-5821-01 4 148457152 148457152 A G EDNRA Missense_Mutation p.R291G 0.11 deleterious(0.02) benign(0.152) TCGA-AM-5821-01 4 148887899 148887899 T C ARHGAP10 Missense_Mutation p.L542P 0.11 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 4 151504743 151504743 C T MAB21L2 Missense_Mutation p.P188S 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-AM-5821-01 4 151842379 151842379 A G LRBA Missense_Mutation p.F206L 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-AM-5821-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.37 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 4 154702527 154702527 G A SFRP2 3'UTR 0.33 TCGA-AM-5821-01 4 155410851 155410851 C T DCHS2 Missense_Mutation p.A553T 0.26 tolerated(0.37) benign(0.158) TCGA-AM-5821-01 4 155525983 155525983 T G FGG 3'UTR 0.35 TCGA-AM-5821-01 4 155720337 155720337 A - RBM46 Frame_Shift_Del p.T343Lfs*2 0.23 TCGA-AM-5821-01 4 159091889 159091889 G - FAM198B Frame_Shift_Del p.S214Pfs*3 0.09 TCGA-AM-5821-01 4 166009650 166009650 A C TMEM192 Missense_Mutation p.C182G 0.22 tolerated(0.28) benign(0.006) TCGA-AM-5821-01 4 16760782 16760782 G A LDB2 Silent p.Y78Y 0.35 TCGA-AM-5821-01 4 169142943 169142943 A G DDX60 Silent p.L1638L 0.31 TCGA-AM-5821-01 4 169633074 169633075 TG - PALLD Splice_Site p.X655_splice 0.16 TCGA-AM-5821-01 4 174242828 174242828 C T GALNT7 Missense_Mutation p.T645M 0.14 tolerated(0.16) benign(0.023) TCGA-AM-5821-01 4 177245363 177245363 G T SPCS3 Missense_Mutation p.K83N 0.14 deleterious(0) probably_damaging(0.951) TCGA-AM-5821-01 4 178272695 178272695 G A NEIL3 Missense_Mutation p.R344K 0.32 tolerated(0.14) benign(0.232) TCGA-AM-5821-01 4 184932053 184932053 C T STOX2 Missense_Mutation p.P688S 0.34 tolerated_low_confidence(0.77) benign(0.001) TCGA-AM-5821-01 4 185691579 185691579 C T ACSL1 Missense_Mutation p.A323T 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-AM-5821-01 4 187004155 187004155 G T TLR3 Missense_Mutation p.G439C 0.14 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 4 187088169 187088169 C T FAM149A Silent p.D404D 0.28 TCGA-AM-5821-01 4 187541401 187541401 G A FAT1 Silent p.N2113N 0.35 TCGA-AM-5821-01 4 187629446 187629446 A G FAT1 Silent p.I512I 0.38 TCGA-AM-5821-01 4 2238182 2238182 G T HAUS3 Missense_Mutation p.L451I 0.27 deleterious(0.03) probably_damaging(0.976) TCGA-AM-5821-01 4 248360 248360 A C ZNF876P RNA 0.19 TCGA-AM-5821-01 4 27019447 27019447 C - STIM2 Frame_Shift_Del p.H545Tfs*64 0.17 TCGA-AM-5821-01 4 2932551 2932551 G A MFSD10 3'UTR 0.16 TCGA-AM-5821-01 4 31144159 31144159 C - PCDH7 Frame_Shift_Del p.H1153Tfs*53 0.15 TCGA-AM-5821-01 4 37447790 37447790 C T KIAA1239 Nonsense_Mutation p.R1394* 0.36 TCGA-AM-5821-01 4 38029455 38029455 G A TBC1D1 Silent p.T419T 0.34 TCGA-AM-5821-01 4 38829433 38829433 G T TLR6 Silent p.G554G 0.13 TCGA-AM-5821-01 4 40752935 40752935 G A NSUN7 Silent p.L75L 0.31 TCGA-AM-5821-01 4 42403405 42403405 T C SHISA3 Silent p.A218A 0.12 TCGA-AM-5821-01 4 44177057 44177057 C T KCTD8 Missense_Mutation p.R391H 0.10 deleterious(0.01) probably_damaging(0.98) TCGA-AM-5821-01 4 48584723 48584723 G A FRYL Missense_Mutation p.R593C 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-AM-5821-01 4 4864767 4864767 C T MSX1 Missense_Mutation p.S270L 0.28 tolerated(0.07) possibly_damaging(0.493) TCGA-AM-5821-01 4 502689 502689 C T PIGG Silent p.H277H 0.14 TCGA-AM-5821-01 4 53728602 53728602 G A RASL11B 5'UTR 0.12 TCGA-AM-5821-01 4 53728679 53728679 G A RASL11B Missense_Mutation p.R2H 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AM-5821-01 4 54218879 54218879 G T SCFD2 Missense_Mutation p.P298H 0.17 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 4 55598060 55598060 A G KIT Missense_Mutation p.T753A 0.08 tolerated(0.69) benign(0.012) TCGA-AM-5821-01 4 5586359 5586359 C T EVC2 Silent p.S1016S 0.35 TCGA-AM-5821-01 4 5755616 5755616 C A EVC Missense_Mutation p.L474M 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-AM-5821-01 4 6279266 6279266 T C WFS1 Silent p.N28N 0.29 TCGA-AM-5821-01 4 6382757 6382757 G A PPP2R2C Silent p.G45G 0.29 TCGA-AM-5821-01 4 69107494 69107494 G A TMPRSS11B Missense_Mutation p.P13S 0.21 deleterious(0.02) benign(0.102) TCGA-AM-5821-01 4 69535658 69535658 T C UGT2B15 Missense_Mutation p.I227V 0.12 tolerated(0.5) benign(0.005) TCGA-AM-5821-01 4 70350942 70350942 C T UGT2B4 Missense_Mutation p.V432I 0.33 deleterious(0.03) benign(0.159) TCGA-AM-5821-01 4 71099896 71099896 G A FDCSP Missense_Mutation p.E84K 0.28 tolerated_low_confidence(0.49) benign(0) TCGA-AM-5821-01 4 71847885 71847885 C T MOB1B 3'UTR 0.31 TCGA-AM-5821-01 4 76861964 76861964 G A NAAA Missense_Mutation p.R47C 0.42 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 4 76957146 76957146 T - CXCL11 5'UTR 0.29 TCGA-AM-5821-01 4 77177526 77177526 G A FAM47E Silent p.R90R 0.32 TCGA-AM-5821-01 4 77290655 77290655 C T CCDC158 Missense_Mutation p.R424Q 0.14 tolerated(0.11) probably_damaging(0.975) TCGA-AM-5821-01 4 81967180 81967180 T A BMP3 Missense_Mutation p.I202N 0.20 deleterious(0) probably_damaging(0.995) TCGA-AM-5821-01 4 8229655 8229655 T C SH3TC1 Missense_Mutation p.L745P 0.11 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 4 8469706 8469706 G T TRMT44 Missense_Mutation p.R520S 0.13 deleterious(0.01) benign(0.441) TCGA-AM-5821-01 4 88106521 88106521 A C KLHL8 Missense_Mutation p.L216R 0.12 deleterious(0) probably_damaging(0.993) TCGA-AM-5821-01 4 88534399 88534399 G A DSPP Missense_Mutation p.R354H 0.12 benign(0.049) TCGA-AM-5821-01 4 88535986 88535986 C T DSPP Silent p.S724S 0.35 TCGA-AM-5821-01 4 898515 898515 G A GAK Silent p.C145C 0.16 TCGA-AM-5821-01 4 90816173 90816173 C T MMRN1 Silent p.G17G 0.12 TCGA-AM-5821-01 4 96222777 96222777 T G UNC5C Missense_Mutation p.K157T 0.28 deleterious(0) possibly_damaging(0.782) TCGA-AM-5821-01 4 9785349 9785349 G C DRD5 3'UTR 0.15 TCGA-AM-5821-01 5 100222285 100222285 A C ST8SIA4 Missense_Mutation p.L89V 0.25 possibly_damaging(0.899) TCGA-AM-5821-01 5 101794187 101794187 G A SLCO6A1 Missense_Mutation p.R344W 0.31 deleterious(0) probably_damaging(0.91) TCGA-AM-5821-01 5 101834533 101834533 C T SLCO6A1 Missense_Mutation p.A6T 0.30 tolerated_low_confidence(0.1) benign(0.078) TCGA-AM-5821-01 5 102890496 102890496 C A NUDT12 Missense_Mutation p.R341S 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-AM-5821-01 5 109159445 109159445 C T MAN2A1 Missense_Mutation p.P825S 0.15 deleterious(0.02) benign(0.211) TCGA-AM-5821-01 5 110560229 110560229 G A CAMK4 Silent p.S16S 0.31 TCGA-AM-5821-01 5 111754653 111754653 C T EPB41L4A Silent p.Q28Q 0.12 TCGA-AM-5821-01 5 112173690 112173690 T - APC Frame_Shift_Del p.F801Lfs*19 0.20 TCGA-AM-5821-01 5 112175676 112175677 AG - APC Frame_Shift_Del p.S1465Wfs*3 0.27 TCGA-AM-5821-01 5 115298304 115298304 C T AQPEP 5'UTR 0.21 TCGA-AM-5821-01 5 115782765 115782765 G - SEMA6A Frame_Shift_Del p.V881Ffs*20 0.30 TCGA-AM-5821-01 5 122337677 122337677 A G SNX24 Silent p.P140P 0.32 TCGA-AM-5821-01 5 122717805 122717805 C A CEP120 Missense_Mutation p.K701N 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-AM-5821-01 5 126732339 126732339 G A MEGF10 Nonsense_Mutation p.W176* 0.41 TCGA-AM-5821-01 5 129037258 129037258 C T ADAMTS19 Silent p.T1038T 0.36 TCGA-AM-5821-01 5 131647886 131647887 - C SLC22A4 Frame_Shift_Ins p.L144Pfs*136 0.35 TCGA-AM-5821-01 5 132099559 132099559 C T SEPT8 Missense_Mutation p.D125N 0.31 tolerated(0.07) possibly_damaging(0.523) TCGA-AM-5821-01 5 132216586 132216586 C T AFF4 3'UTR 0.47 TCGA-AM-5821-01 5 134871009 134871009 G A NEUROG1 Silent p.D124D 0.30 TCGA-AM-5821-01 5 134871019 134871019 G A NEUROG1 Missense_Mutation p.S121L 0.32 deleterious(0) possibly_damaging(0.75) TCGA-AM-5821-01 5 135207264 135207264 G - SLC25A48 Intron 0.24 TCGA-AM-5821-01 5 138714338 138714338 G A SLC23A1 Missense_Mutation p.A374V 0.31 deleterious(0.01) possibly_damaging(0.877) TCGA-AM-5821-01 5 138716276 138716276 A G SLC23A1 Missense_Mutation p.I148T 0.28 tolerated(0.08) benign(0.009) TCGA-AM-5821-01 5 139907469 139907472 TGTC - ANKHD1 Frame_Shift_Del p.S1701Ffs*9 0.25 TCGA-AM-5821-01 5 140176930 140176930 T C PCDHA2 Missense_Mutation p.V794A 0.13 tolerated_low_confidence(0.56) benign(0.002) TCGA-AM-5821-01 5 140188275 140188276 GC - PCDHA4 Frame_Shift_Del p.L504Vfs*96 0.33 TCGA-AM-5821-01 5 140208784 140208784 G A PCDHA6 Missense_Mutation p.A370T 0.30 tolerated_low_confidence(0.09) possibly_damaging(0.731) TCGA-AM-5821-01 5 140263395 140263395 C T PCDHA13 Silent p.S514S 0.33 TCGA-AM-5821-01 5 140306525 140306525 C T PCDHAC1 Silent p.G16G 0.33 TCGA-AM-5821-01 5 140306534 140306534 G T PCDHAC1 Silent p.A19A 0.17 TCGA-AM-5821-01 5 140475976 140475976 C T PCDHB2 Silent p.G534G 0.16 TCGA-AM-5821-01 5 140476346 140476346 G A PCDHB2 Missense_Mutation p.A658T 0.31 deleterious_low_confidence(0.01) benign(0.015) TCGA-AM-5821-01 5 140557897 140557897 G T PCDHB8 Missense_Mutation p.E94D 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.784) TCGA-AM-5821-01 5 140573432 140573432 A G PCDHB10 Missense_Mutation p.N436S 0.31 tolerated_low_confidence(0.15) benign(0.003) TCGA-AM-5821-01 5 140573466 140573466 C T PCDHB10 Silent p.N447N 0.31 TCGA-AM-5821-01 5 140594973 140594973 G A PCDHB13 Silent p.L426L 0.18 TCGA-AM-5821-01 5 140596987 140596987 A G PCDHB13 3'UTR 0.38 TCGA-AM-5821-01 5 140605626 140605626 G A PCDHB14 3'UTR 0.23 TCGA-AM-5821-01 5 140616242 140616242 T C PCDHB18 RNA 0.20 TCGA-AM-5821-01 5 140626369 140626369 C T PCDHB15 Missense_Mutation p.A408V 0.08 deleterious_low_confidence(0.04) benign(0.05) TCGA-AM-5821-01 5 140745545 140745545 C A PCDHGA5 Missense_Mutation p.L550M 0.11 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-AM-5821-01 5 140746123 140746123 C T PCDHGA5 Silent p.G742G 0.12 TCGA-AM-5821-01 5 140769356 140769356 C T PCDHGB4 Silent p.A635A 0.27 TCGA-AM-5821-01 5 140784313 140784313 A G PCDHGA9 Silent p.S598S 0.31 TCGA-AM-5821-01 5 140794744 140794744 G A PCDHGA10 Missense_Mutation p.V668M 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.694) TCGA-AM-5821-01 5 140798252 140798252 G T PCDHGB7 Nonsense_Mutation p.E276* 0.46 TCGA-AM-5821-01 5 140807648 140807648 C T PCDHGB6 Intron 0.20 TCGA-AM-5821-01 5 140953387 140953387 G - DIAPH1 Frame_Shift_Del p.P677Hfs*91 0.24 TCGA-AM-5821-01 5 14316812 14316812 A G TRIO Missense_Mutation p.Q564R 0.18 benign(0.005) TCGA-AM-5821-01 5 143262 143262 C T PLEKHG4B Silent p.P170P 0.19 TCGA-AM-5821-01 5 14330900 14330900 T A TRIO Missense_Mutation p.I582N 0.46 benign(0.008) TCGA-AM-5821-01 5 145719276 145719276 C T POU4F3 Missense_Mutation p.P96S 0.09 tolerated(0.16) possibly_damaging(0.761) TCGA-AM-5821-01 5 147781648 147781648 C T FBXO38 Silent p.G122G 0.12 TCGA-AM-5821-01 5 149449470 149449470 C - CSF1R Frame_Shift_Del p.S493Vfs*119 0.31 TCGA-AM-5821-01 5 149907468 149907468 C T NDST1 Silent p.L206L 0.35 TCGA-AM-5821-01 5 153065877 153065877 C T GRIA1 Silent p.D384D 0.32 TCGA-AM-5821-01 5 154183778 154183778 G A LARP1 Silent p.K742K 0.16 TCGA-AM-5821-01 5 154284109 154284110 - A GEMIN5 Frame_Shift_Ins p.H864Sfs*18 0.24 TCGA-AM-5821-01 5 154397151 154397151 A C KIF4B 3'UTR 0.28 TCGA-AM-5821-01 5 158630537 158630537 T C RNF145 Missense_Mutation p.D60G 0.29 deleterious(0) probably_damaging(0.94) TCGA-AM-5821-01 5 159504994 159504994 G A PWWP2A 3'UTR 0.36 TCGA-AM-5821-01 5 159520961 159520961 C T PWWP2A Silent p.K232K 0.33 TCGA-AM-5821-01 5 160047615 160047615 C T ATP10B Missense_Mutation p.A719T 0.33 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 5 16672916 16672916 G A MYO10 Nonsense_Mutation p.R1731* 0.25 TCGA-AM-5821-01 5 16701721 16701721 C T MYO10 Missense_Mutation p.R928H 0.09 tolerated_low_confidence(0.08) benign(0.271) TCGA-AM-5821-01 5 167689232 167689232 T C TENM2 Missense_Mutation p.V2581A 0.26 deleterious(0) probably_damaging(0.997) TCGA-AM-5821-01 5 167979965 167979965 C A PANK3 3'UTR 0.21 TCGA-AM-5821-01 5 168310284 168310284 G A SLIT3 Silent p.T157T 0.35 TCGA-AM-5821-01 5 169018160 169018160 C T SPDL1 Missense_Mutation p.H90Y 0.14 tolerated(0.17) benign(0.315) TCGA-AM-5821-01 5 169472857 169472857 C T DOCK2 Missense_Mutation p.A1305V 0.33 tolerated(0.2) benign(0.104) TCGA-AM-5821-01 5 169661119 169661119 T - C5orf58 5'UTR 0.27 TCGA-AM-5821-01 5 170827846 170827846 A G NPM1 Missense_Mutation p.I196V 0.22 tolerated(0.65) benign(0.002) TCGA-AM-5821-01 5 171327029 171327029 A G FBXW11 Missense_Mutation p.V150A 0.34 deleterious(0.03) probably_damaging(1) TCGA-AM-5821-01 5 172660080 172660080 C T NKX2-5 Missense_Mutation p.R156H 0.09 deleterious(0) probably_damaging(0.991) TCGA-AM-5821-01 5 173317785 173317785 G A CPEB4 Missense_Mutation p.R350H 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AM-5821-01 5 174869928 174869928 T G DRD1 Missense_Mutation p.T59P 0.24 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 5 175926005 175926005 G A FAF2 Silent p.K310K 0.11 TCGA-AM-5821-01 5 176721031 176721031 A G NSD1 Missense_Mutation p.Y2221C 0.18 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 5 176867999 176867999 G A GRK6 Missense_Mutation p.G541D 0.13 tolerated(0.57) possibly_damaging(0.825) TCGA-AM-5821-01 5 176910961 176910961 C T PDLIM7 Silent p.T398T 0.29 TCGA-AM-5821-01 5 177034371 177034371 T C B4GALT7 Missense_Mutation p.M161T 0.14 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 5 180043464 180043464 C T FLT4 Missense_Mutation p.R1041Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 5 22143016 22143016 T - CDH12 Intron 0.22 TCGA-AM-5821-01 5 2752547 2752547 C A C5orf38 Missense_Mutation p.P57T 0.49 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-AM-5821-01 5 33944917 33944917 C T SLC45A2 Missense_Mutation p.A477T 0.11 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 5 34035769 34035769 C T C1QTNF3 Missense_Mutation p.G133D 0.10 deleterious(0) possibly_damaging(0.749) TCGA-AM-5821-01 5 36249722 36249722 T - RANBP3L 3'UTR 0.32 TCGA-AM-5821-01 5 36268298 36268298 G A RANBP3L Missense_Mutation p.P114S 0.53 tolerated(0.11) benign(0.023) TCGA-AM-5821-01 5 36985083 36985083 A - NIPBL Frame_Shift_Del p.K603Sfs*11 0.27 TCGA-AM-5821-01 5 38933119 38933119 T C OSMR Missense_Mutation p.L838P 0.48 tolerated(0.06) benign(0.023) TCGA-AM-5821-01 5 39202215 39202215 T - FYB Frame_Shift_Del p.K293Rfs*6 0.37 TCGA-AM-5821-01 5 476461 476461 C T SLC9A3 Silent p.T641T 0.12 TCGA-AM-5821-01 5 5462576 5462576 A G KIAA0947 Silent p.Q1043Q 0.08 TCGA-AM-5821-01 5 57750748 57750748 C A PLK2 Missense_Mutation p.G619V 0.27 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 5 61789838 61789838 C T IPO11 Nonsense_Mutation p.R533* 0.34 TCGA-AM-5821-01 5 71489936 71489936 G T MAP1B Missense_Mutation p.G252C 0.35 unknown(0) TCGA-AM-5821-01 5 74685462 74685462 G A COL4A3BP Silent p.G541G 0.14 TCGA-AM-5821-01 5 74880751 74880751 G T POLK Missense_Mutation p.R409M 0.32 deleterious(0) probably_damaging(0.987) TCGA-AM-5821-01 5 75932897 75932897 A - IQGAP2 Frame_Shift_Del p.K608Nfs*42 0.29 TCGA-AM-5821-01 5 76332396 76332396 T C AGGF1 Silent p.L178L 0.13 TCGA-AM-5821-01 5 77711441 77711441 A C SCAMP1 Missense_Mutation p.K78T 0.16 tolerated(0.29) benign(0.002) TCGA-AM-5821-01 5 86676392 86676392 C A RASA1 Silent p.T890T 0.36 TCGA-AM-5821-01 5 891776 891776 A G BRD9 Silent p.D82D 0.13 TCGA-AM-5821-01 5 89999600 89999600 T G GPR98 Silent p.L2758L 0.14 TCGA-AM-5821-01 5 90106437 90106437 A G GPR98 Silent p.A5120A 0.30 TCGA-AM-5821-01 5 93076713 93076713 T - POU5F2 Frame_Shift_Del p.K186Sfs*3 0.17 TCGA-AM-5821-01 5 94927120 94927120 C T ARSK Missense_Mutation p.A296V 0.13 deleterious(0) probably_damaging(0.933) TCGA-AM-5821-01 5 96118886 96118886 G A ERAP1 Silent p.D718D 0.23 TCGA-AM-5821-01 5 96512901 96512901 G A RIOK2 Silent p.R139R 0.14 TCGA-AM-5821-01 5 98199161 98199161 C G CHD1 Missense_Mutation p.E1460Q 0.13 tolerated(0.12) benign(0.001) TCGA-AM-5821-01 6 100061099 100061099 G A PRDM13 Silent p.A196A 0.16 TCGA-AM-5821-01 6 102069939 102069939 C A GRIK2 Silent p.T77T 0.17 TCGA-AM-5821-01 6 109933261 109933261 T C AK9 Missense_Mutation p.R549G 0.17 tolerated(0.47) benign(0.001) TCGA-AM-5821-01 6 110300664 110300664 G A GPR6 Missense_Mutation p.A117T 0.30 deleterious(0) probably_damaging(0.995) TCGA-AM-5821-01 6 110620203 110620203 A C METTL24 Missense_Mutation p.H236Q 0.34 deleterious(0.03) possibly_damaging(0.831) TCGA-AM-5821-01 6 111701329 111701329 C T REV3L Missense_Mutation p.C437Y 0.37 tolerated(1) benign(0.045) TCGA-AM-5821-01 6 112457432 112457432 G A LAMA4 Missense_Mutation p.R1103C 0.18 deleterious(0) possibly_damaging(0.893) TCGA-AM-5821-01 6 117869701 117869701 G A DCBLD1 Intron 0.50 TCGA-AM-5821-01 6 119670016 119670017 - C MAN1A1 Frame_Shift_Ins p.V72Gfs*93 0.29 TCGA-AM-5821-01 6 122753302 122753302 G T HSF2 Silent p.L516L 0.16 TCGA-AM-5821-01 6 123319159 123319159 G A CLVS2 Silent p.R79R 0.25 TCGA-AM-5821-01 6 126320611 126320611 T C TRMT11 Silent p.D177D 0.26 TCGA-AM-5821-01 6 132892144 132892144 G A TAAR6 Silent p.A228A 0.35 TCGA-AM-5821-01 6 132938377 132938377 C T TAAR2 Missense_Mutation p.R323H 0.20 deleterious(0.02) benign(0.016) TCGA-AM-5821-01 6 133767851 133767851 C A EYA4 Missense_Mutation p.S56Y 0.17 deleterious_low_confidence(0) benign(0.373) TCGA-AM-5821-01 6 133767883 133767883 G A EYA4 Missense_Mutation p.G67R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-AM-5821-01 6 135606667 135606667 T C AHI1 3'UTR 0.27 TCGA-AM-5821-01 6 136562766 136562766 A C MTFR2 Silent p.P110P 0.30 TCGA-AM-5821-01 6 136683747 136683747 G A MAP7 Missense_Mutation p.A478V 0.19 tolerated(0.13) benign(0.114) TCGA-AM-5821-01 6 136904714 136904714 T C MAP3K5 Silent p.V1130V 0.09 TCGA-AM-5821-01 6 143823616 143823616 C T FUCA2 Missense_Mutation p.R280H 0.32 tolerated(0.08) possibly_damaging(0.667) TCGA-AM-5821-01 6 144750824 144750824 A T UTRN Missense_Mutation p.T268S 0.22 tolerated(0.05) benign(0.405) TCGA-AM-5821-01 6 146755587 146755587 G T GRM1 Silent p.L1080L 0.28 TCGA-AM-5821-01 6 148865031 148865031 A - SASH1 Frame_Shift_Del p.N810Tfs*48 0.25 TCGA-AM-5821-01 6 149777899 149777899 C T ZC3H12D Missense_Mutation p.V195I 0.33 deleterious(0) probably_damaging(0.98) TCGA-AM-5821-01 6 149982871 149982872 AT - LATS1 Frame_Shift_Del p.Y1129Cfs*5 0.09 TCGA-AM-5821-01 6 158066812 158066812 G A ZDHHC14 Missense_Mutation p.V266I 0.32 tolerated(0.23) benign(0.252) TCGA-AM-5821-01 6 158902140 158902140 C T TULP4 Silent p.A435A 0.35 TCGA-AM-5821-01 6 159178391 159178391 G A SYTL3 Missense_Mutation p.R429H 0.33 tolerated(0.28) benign(0) TCGA-AM-5821-01 6 159654299 159654299 C A FNDC1 Missense_Mutation p.L919M 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-AM-5821-01 6 161132190 161132190 A - PLG Frame_Shift_Del p.K126Nfs*104 0.10 TCGA-AM-5821-01 6 163987695 163987695 T - QKI Intron 0.12 TCGA-AM-5821-01 6 168999505 168999505 C A SMOC2 Silent p.S226S 0.31 TCGA-AM-5821-01 6 170627792 170627792 C A FAM120B Silent p.P438P 0.13 TCGA-AM-5821-01 6 24588876 24588876 G - KIAA0319 Frame_Shift_Del p.S314Lfs*19 0.20 TCGA-AM-5821-01 6 25917000 25917000 A C SLC17A2 Silent p.G281G 0.09 TCGA-AM-5821-01 6 26021995 26021995 T G HIST1H4A Missense_Mutation p.I30S 0.19 deleterious(0) probably_damaging(0.994) TCGA-AM-5821-01 6 26156678 26156680 GAA - HIST1H1E In_Frame_Del p.K23del 0.21 TCGA-AM-5821-01 6 27115002 27115002 A G HIST1H2AH Missense_Mutation p.H32R 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.723) TCGA-AM-5821-01 6 27368845 27368845 C T ZNF391 Silent p.D232D 0.08 TCGA-AM-5821-01 6 29599251 29599251 G A GABBR1 Missense_Mutation p.R71C 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AM-5821-01 6 29910346 29910346 C - HLA-A Frame_Shift_Del p.R7Efs*13 0.16 TCGA-AM-5821-01 6 3010328 3010328 C TG NQO2 Frame_Shift_Ins p.A26Vfs*4 0.32 TCGA-AM-5821-01 6 30309733 30309733 C T TRIM39 Silent p.G418G 0.12 TCGA-AM-5821-01 6 30610683 30610683 A C ATAT1 Missense_Mutation p.E276A 0.17 tolerated(0.07) probably_damaging(0.984) TCGA-AM-5821-01 6 30653300 30653300 G T PPP1R18 Missense_Mutation p.P166T 0.29 tolerated_low_confidence(0.23) benign(0.005) TCGA-AM-5821-01 6 31083673 31083673 A C CDSN 3'UTR 0.36 TCGA-AM-5821-01 6 31584641 31584641 C - AIF1 Frame_Shift_Del p.P138Qfs*36 0.29 TCGA-AM-5821-01 6 31627766 31627766 C A C6orf47 5'UTR 0.32 TCGA-AM-5821-01 6 31627776 31627776 C T C6orf47 5'UTR 0.31 TCGA-AM-5821-01 6 31638735 31638735 T A LY6G5B Missense_Mutation p.V3D 0.22 deleterious_low_confidence(0.01) benign(0.186) TCGA-AM-5821-01 6 31850721 31850721 C T EHMT2 Silent p.A1020A 0.40 TCGA-AM-5821-01 6 31997089 31997089 T C C4B Missense_Mutation p.L1217P 0.16 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 6 32138372 32138372 T G AGPAT1 Missense_Mutation p.M114L 0.17 deleterious(0.02) benign(0.179) TCGA-AM-5821-01 6 32942395 32942395 A G BRD2 Silent p.P62P 0.28 TCGA-AM-5821-01 6 33283669 33283669 C - ZBTB22 Frame_Shift_Del p.G342Vfs*17 0.26 TCGA-AM-5821-01 6 33645357 33645357 T C ITPR3 Missense_Mutation p.M1200T 0.13 deleterious(0.01) probably_damaging(0.969) TCGA-AM-5821-01 6 34498093 34498093 C T PACSIN1 Missense_Mutation p.R288C 0.25 deleterious(0) possibly_damaging(0.771) TCGA-AM-5821-01 6 35205787 35205787 C T SCUBE3 Missense_Mutation p.T274M 0.10 deleterious(0) probably_damaging(0.989) TCGA-AM-5821-01 6 35280293 35280293 T G DEF6 Missense_Mutation p.L213R 0.10 deleterious(0) possibly_damaging(0.73) TCGA-AM-5821-01 6 35443174 35443174 A G TEAD3 Missense_Mutation p.L378P 0.18 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 6 35473858 35473858 G A TULP1 Silent p.C307C 0.19 TCGA-AM-5821-01 6 35773600 35773600 C T LHFPL5 Silent p.G51G 0.36 TCGA-AM-5821-01 6 37141956 37141956 G A PIM1 3'UTR 0.48 TCGA-AM-5821-01 6 37186552 37186552 T C TMEM217 Silent p.S85S 0.32 TCGA-AM-5821-01 6 37358566 37358566 C A RNF8 3'UTR 0.28 TCGA-AM-5821-01 6 37623535 37623535 C T MDGA1 Missense_Mutation p.D174N 0.27 tolerated(0.15) benign(0.025) TCGA-AM-5821-01 6 39824040 39824040 G T DAAM2 5'UTR 0.31 TCGA-AM-5821-01 6 401668 401668 C T IRF4 Silent p.C330C 0.22 TCGA-AM-5821-01 6 44922249 44922249 A G SUPT3H Missense_Mutation p.Y237H 0.34 deleterious(0.04) benign(0.16) TCGA-AM-5821-01 6 46657353 46657354 - A TDRD6 Frame_Shift_Ins p.N498Kfs*4 0.27 TCGA-AM-5821-01 6 47253989 47253989 G - TNFRSF21 Frame_Shift_Del p.H147Ifs*37 0.21 TCGA-AM-5821-01 6 52317488 52317488 A T EFHC1 Silent p.V192V 0.12 TCGA-AM-5821-01 6 53785513 53785513 C T LRRC1 Missense_Mutation p.A457V 0.37 tolerated(1) benign(0.003) TCGA-AM-5821-01 6 55266739 55266748 TCTCCTCTCC - GFRAL 3'UTR 0.17 TCGA-AM-5821-01 6 56483287 56483287 T - DST Intron 0.25 TCGA-AM-5821-01 6 56504059 56504059 C A DST Nonsense_Mutation p.E451* 0.35 TCGA-AM-5821-01 6 6225003 6225003 C T F13A1 Missense_Mutation p.V297I 0.14 tolerated(0.08) benign(0.026) TCGA-AM-5821-01 6 70423652 70423652 C T LMBRD1 Missense_Mutation p.R267H 0.14 tolerated(0.11) benign(0.058) TCGA-AM-5821-01 6 71546692 71546692 A - SMAP1 Frame_Shift_Del p.A211Lfs*9 0.23 TCGA-AM-5821-01 6 71666139 71666139 C T B3GAT2 5'UTR 0.34 TCGA-AM-5821-01 6 72960123 72960123 C A RIMS1 Silent p.R778R 0.23 TCGA-AM-5821-01 6 73016960 73016960 G A RIMS1 Splice_Site p.X1284_splice 0.26 TCGA-AM-5821-01 6 7880637 7880637 A - BMP6 3'UTR 0.34 TCGA-AM-5821-01 6 79675418 79675418 A G PHIP Splice_Site p.X1127_splice 0.14 TCGA-AM-5821-01 6 83850087 83850087 G A DOPEY1 Missense_Mutation p.A1794T 0.10 tolerated(0.2) benign(0.069) TCGA-AM-5821-01 6 84233480 84233480 C A PRSS35 Missense_Mutation p.P107Q 0.30 tolerated(0.23) benign(0.055) TCGA-AM-5821-01 6 84799094 84799094 A T MRAP2 Missense_Mutation p.N171I 0.16 deleterious(0) possibly_damaging(0.76) TCGA-AM-5821-01 6 90331678 90331679 AG - ANKRD6 Frame_Shift_Del p.R280Afs*14 0.23 TCGA-AM-5821-01 6 97562241 97562241 G - KLHL32 Frame_Shift_Del p.G405Afs*50 0.08 TCGA-AM-5821-01 7 100160281 100160281 A G AGFG2 Missense_Mutation p.S355G 0.32 tolerated(0.26) benign(0.001) TCGA-AM-5821-01 7 100174628 100174628 G A LRCH4 Silent p.N455N 0.33 TCGA-AM-5821-01 7 100175486 100175486 C T LRCH4 Missense_Mutation p.R333Q 0.36 tolerated(0.18) probably_damaging(0.99) TCGA-AM-5821-01 7 100281015 100281015 C T GIGYF1 Missense_Mutation p.R702H 0.19 deleterious(0) unknown(0) TCGA-AM-5821-01 7 100414826 100414826 T G EPHB4 Missense_Mutation p.T526P 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-AM-5821-01 7 100779052 100779052 G A SERPINE1 Missense_Mutation p.E353K 0.23 deleterious(0.01) probably_damaging(1) TCGA-AM-5821-01 7 102760163 102760163 C A NAPEPLD Missense_Mutation p.G268C 0.14 tolerated(0.07) benign(0.107) TCGA-AM-5821-01 7 105635219 105635219 A G CDHR3 Missense_Mutation p.K179R 0.13 tolerated(0.5) benign(0.011) TCGA-AM-5821-01 7 107302225 107302225 C T SLC26A4 Missense_Mutation p.R47W 0.35 tolerated(0.21) possibly_damaging(0.614) TCGA-AM-5821-01 7 107340584 107340584 C T SLC26A4 Silent p.G557G 0.32 TCGA-AM-5821-01 7 112407625 112407626 - T TMEM168 Frame_Shift_Ins p.T574Nfs*5 0.10 TCGA-AM-5821-01 7 116409799 116409799 C T MET Missense_Mutation p.T913M 0.29 deleterious(0.04) possibly_damaging(0.885) TCGA-AM-5821-01 7 11676166 11676166 C T THSD7A Missense_Mutation p.E205K 0.32 tolerated(0.74) benign(0.044) TCGA-AM-5821-01 7 121608017 121608017 A - PTPRZ1 Frame_Shift_Del p.N48Ifs*26 0.21 TCGA-AM-5821-01 7 122339204 122339204 A G RNF133 5'UTR 0.25 TCGA-AM-5821-01 7 124387219 124387219 C T GPR37 Missense_Mutation p.R401H 0.30 tolerated(0.46) possibly_damaging(0.595) TCGA-AM-5821-01 7 128356995 128356995 G - FAM71F1 Frame_Shift_Del p.Q128Rfs*10 0.33 TCGA-AM-5821-01 7 128363280 128363280 G A FAM71F1 Silent p.Q239Q 0.12 TCGA-AM-5821-01 7 134850430 134850430 G A TMEM140 3'UTR 0.37 TCGA-AM-5821-01 7 135312859 135312859 G T NUP205 Missense_Mutation p.Q1644H 0.08 deleterious(0) probably_damaging(0.997) TCGA-AM-5821-01 7 136938377 136938377 T - PTN Frame_Shift_Del p.V42* 0.26 TCGA-AM-5821-01 7 13946180 13946180 A G ETV1 Missense_Mutation p.Y329H 0.13 deleterious(0.02) probably_damaging(1) TCGA-AM-5821-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-AM-5821-01 7 142569487 142569487 G A TRPV6 Silent p.D717D 0.16 TCGA-AM-5821-01 7 142962174 142962174 G A GSTK1 Missense_Mutation p.V125I 0.31 tolerated(1) benign(0.003) TCGA-AM-5821-01 7 148483678 148483681 CACT - CUL1 Frame_Shift_Del p.L446Ifs*3 0.38 TCGA-AM-5821-01 7 149502988 149502988 G A SSPO RNA 0.19 TCGA-AM-5821-01 7 149519662 149519662 G T SSPO RNA 0.11 TCGA-AM-5821-01 7 150070103 150070103 G - REPIN1 3'Flank 0.14 TCGA-AM-5821-01 7 150417431 150417431 C T GIMAP1 Silent p.H113H 0.46 TCGA-AM-5821-01 7 150490296 150490296 G A TMEM176B Silent p.I160I 0.23 TCGA-AM-5821-01 7 150696314 150696314 C T NOS3 Silent p.Y331Y 0.24 TCGA-AM-5821-01 7 150715744 150715744 C T ATG9B Missense_Mutation p.A561T 0.20 tolerated(0.58) benign(0.014) TCGA-AM-5821-01 7 150935182 150935182 C T CHPF2 Silent p.D578D 0.43 TCGA-AM-5821-01 7 151135072 151135072 G T CRYGN Intron 0.29 TCGA-AM-5821-01 7 151704992 151704993 - T GALNTL5 Frame_Shift_Ins p.W332Lfs*32 0.14 TCGA-AM-5821-01 7 1529299 1529299 C T INTS1 Missense_Mutation p.A729T 0.12 deleterious(0) probably_damaging(0.976) TCGA-AM-5821-01 7 155174874 155174874 C T AC008060.7 Missense_Mutation p.A19V 0.09 possibly_damaging(0.691) TCGA-AM-5821-01 7 156798430 156798430 G A MNX1 Silent p.A330A 0.37 TCGA-AM-5821-01 7 20198675 20198675 T C MACC1 Missense_Mutation p.I437V 0.12 tolerated(1) benign(0) TCGA-AM-5821-01 7 20198752 20198752 T - MACC1 Frame_Shift_Del p.N411Tfs*23 0.16 TCGA-AM-5821-01 7 23351910 23351910 G A IGF2BP3 3'UTR 0.34 TCGA-AM-5821-01 7 24892132 24892132 G T OSBPL3 Silent p.A383A 0.32 TCGA-AM-5821-01 7 2697988 2697988 G A TTYH3 Missense_Mutation p.R440H 0.28 tolerated(0.05) probably_damaging(0.931) TCGA-AM-5821-01 7 27147465 27147472 AAAAAAAG - HOXA3 3'UTR 0.26 TCGA-AM-5821-01 7 27147962 27147962 G - HOXA3 Frame_Shift_Del p.Q302Rfs*74 0.36 TCGA-AM-5821-01 7 27222386 27222386 C - HOXA11 3'UTR 0.30 TCGA-AM-5821-01 7 28848927 28848927 C T CREB5 Missense_Mutation p.R384W 0.10 deleterious(0) unknown(0) TCGA-AM-5821-01 7 28858944 28858944 C T CREB5 3'UTR 0.35 TCGA-AM-5821-01 7 28997377 28997377 G T AC005013.5 RNA 0.08 TCGA-AM-5821-01 7 30197085 30197085 C T MTURN Missense_Mutation p.A106V 0.22 deleterious_low_confidence(0.01) benign(0.089) TCGA-AM-5821-01 7 30656861 30656861 T C GARS Silent p.C442C 0.26 TCGA-AM-5821-01 7 31008502 31008502 T C GHRHR Silent p.D37D 0.13 TCGA-AM-5821-01 7 33014891 33014891 G A FKBP9 Silent p.K155K 0.22 TCGA-AM-5821-01 7 33573656 33573656 A C BBS9 Missense_Mutation p.S797R 0.25 deleterious(0.03) probably_damaging(0.947) TCGA-AM-5821-01 7 36465313 36465313 T C ANLN Silent p.A904A 0.26 TCGA-AM-5821-01 7 38534070 38534070 T G AMPH Missense_Mutation p.D88A 0.12 deleterious(0) probably_damaging(0.954) TCGA-AM-5821-01 7 4153024 4153024 G A SDK1 Missense_Mutation p.V1180I 0.39 tolerated(0.21) benign(0.221) TCGA-AM-5821-01 7 43484837 43484837 G T HECW1 Missense_Mutation p.S689I 0.15 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-AM-5821-01 7 44571435 44571437 CAG - NPC1L1 In_Frame_Del p.L852del 0.31 TCGA-AM-5821-01 7 45614750 45614751 - C ADCY1 Frame_Shift_Ins p.A205Rfs*32 0.32 TCGA-AM-5821-01 7 47343049 47343049 A C TNS3 Missense_Mutation p.S986A 0.40 tolerated(0.21) benign(0.103) TCGA-AM-5821-01 7 4815370 4815370 T C AP5Z1 Silent p.S8S 0.23 TCGA-AM-5821-01 7 48494724 48494724 C T ABCA13 Missense_Mutation p.T4219M 0.28 possibly_damaging(0.453) TCGA-AM-5821-01 7 538116 538116 T A PDGFA 3'UTR 0.17 TCGA-AM-5821-01 7 54610406 54610406 C - VSTM2A 5'UTR 0.13 TCGA-AM-5821-01 7 54636851 54636851 C T VSTM2A 3'UTR 0.24 TCGA-AM-5821-01 7 55224343 55224343 C T EGFR Missense_Mutation p.A375V 0.32 deleterious(0.04) possibly_damaging(0.824) TCGA-AM-5821-01 7 56022804 56022804 C T MRPS17 Missense_Mutation p.P109L 0.33 tolerated_low_confidence(0.18) benign(0.005) TCGA-AM-5821-01 7 6064210 6064210 C T EIF2AK1 3'UTR 0.33 TCGA-AM-5821-01 7 62753078 62753078 C A ZNF733P RNA 0.60 TCGA-AM-5821-01 7 65705429 65705429 A C TPST1 Missense_Mutation p.K6T 0.28 tolerated_low_confidence(0.07) possibly_damaging(0.809) TCGA-AM-5821-01 7 73010716 73010716 C T MLXIPL Missense_Mutation p.R639Q 0.30 tolerated(0.21) benign(0.193) TCGA-AM-5821-01 7 73245587 73245587 T C CLDN4 Missense_Mutation p.L19P 0.12 deleterious(0) probably_damaging(0.95) TCGA-AM-5821-01 7 81381573 81381573 A - HGF Frame_Shift_Del p.L163Cfs*50 0.13 TCGA-AM-5821-01 7 90895553 90895553 C T FZD1 Missense_Mutation p.A453V 0.18 deleterious(0.03) possibly_damaging(0.908) TCGA-AM-5821-01 7 92099272 92099272 T C ERVW-1 Missense_Mutation p.T142A 0.27 tolerated(0.13) benign(0.145) TCGA-AM-5821-01 7 92848663 92848663 C T HEPACAM2 Missense_Mutation p.A61T 0.30 tolerated(0.12) probably_damaging(1) TCGA-AM-5821-01 7 93540125 93540125 A G GNGT1 Silent p.V40V 0.34 TCGA-AM-5821-01 7 98634688 98634688 A G SMURF1 Splice_Site p.X629_splice 0.20 TCGA-AM-5821-01 8 100711952 100711952 A C VPS13B Missense_Mutation p.K2107N 0.09 tolerated(0.24) possibly_damaging(0.788) TCGA-AM-5821-01 8 101011503 101011503 C T RGS22 Missense_Mutation p.R979H 0.35 deleterious(0) probably_damaging(0.991) TCGA-AM-5821-01 8 104427123 104427123 T C SLC25A32 Missense_Mutation p.S15G 0.31 tolerated(0.35) benign(0) TCGA-AM-5821-01 8 104831714 104831715 - G RIMS2 Intron 0.25 TCGA-AM-5821-01 8 104897620 104897620 G A RIMS2 Missense_Mutation p.A265T 0.29 tolerated_low_confidence(0.32) benign(0.005) TCGA-AM-5821-01 8 108315522 108315522 A G ANGPT1 Silent p.F294F 0.34 TCGA-AM-5821-01 8 113253957 113253957 T G CSMD3 Missense_Mutation p.K3487T 0.35 deleterious(0.01) possibly_damaging(0.549) TCGA-AM-5821-01 8 113277810 113277810 C T CSMD3 Missense_Mutation p.C3173Y 0.12 deleterious(0) probably_damaging(0.979) TCGA-AM-5821-01 8 113662399 113662399 T C CSMD3 Missense_Mutation p.T1062A 0.37 tolerated(0.08) possibly_damaging(0.641) TCGA-AM-5821-01 8 114326880 114326880 A - CSMD3 Frame_Shift_Del p.Q108Sfs*5 0.10 TCGA-AM-5821-01 8 120255768 120255768 G T MAL2 3'UTR 0.13 TCGA-AM-5821-01 8 121432141 121432141 T - MRPL13 Frame_Shift_Del p.N115Tfs*7 0.23 TCGA-AM-5821-01 8 124238786 124238786 A G C8orf76 Missense_Mutation p.M301T 0.29 deleterious(0) benign(0.234) TCGA-AM-5821-01 8 124369831 124369831 C T ATAD2 Missense_Mutation p.E510K 0.13 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 8 124383983 124383983 G A ATAD2 Missense_Mutation p.R155C 0.34 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 8 125088497 125088497 A C FER1L6 Missense_Mutation p.K1384T 0.08 tolerated(0.25) benign(0.012) TCGA-AM-5821-01 8 125107166 125107166 G A FER1L6 Missense_Mutation p.A1528T 0.08 deleterious(0) possibly_damaging(0.698) TCGA-AM-5821-01 8 125132108 125132108 C A FER1L6 3'UTR 0.17 TCGA-AM-5821-01 8 125464272 125464273 - A TRMT12 Frame_Shift_Ins p.N369Kfs*12 0.24 TCGA-AM-5821-01 8 134274309 134274309 C T NDRG1 Missense_Mutation p.A103T 0.17 deleterious(0) probably_damaging(0.989) TCGA-AM-5821-01 8 140744248 140744248 C A TRAPPC9 Missense_Mutation p.G1183C 0.33 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 8 141566347 141566347 T - AGO2 Frame_Shift_Del p.K355Nfs*2 0.24 TCGA-AM-5821-01 8 141595279 141595279 T - AGO2 Frame_Shift_Del p.I52Lfs*87 0.07 TCGA-AM-5821-01 8 142480825 142480825 C A MROH5 3'UTR 0.08 TCGA-AM-5821-01 8 143822632 143822632 C T SLURP1 Missense_Mutation p.D81N 0.38 deleterious(0.04) possibly_damaging(0.696) TCGA-AM-5821-01 8 143928016 143928016 G A GML Silent p.E129E 0.33 TCGA-AM-5821-01 8 144681665 144681665 A G TIGD5 Missense_Mutation p.E531G 0.19 tolerated(0.05) benign(0.058) TCGA-AM-5821-01 8 144886852 144886852 G - SCRIB Frame_Shift_Del p.T966Pfs*9 0.39 TCGA-AM-5821-01 8 144944437 144944437 C T EPPK1 Silent p.P995P 0.47 TCGA-AM-5821-01 8 144995971 144995971 G A PLEC Missense_Mutation p.A2810V 0.15 benign(0.053) TCGA-AM-5821-01 8 145057971 145057971 G T PARP10 Silent p.R596R 0.44 TCGA-AM-5821-01 8 145246740 145246740 G T MROH1 Missense_Mutation p.E279D 0.11 tolerated(0.07) benign(0.145) TCGA-AM-5821-01 8 145625873 145625873 C T CPSF1 Missense_Mutation p.R234Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-AM-5821-01 8 145678691 145678691 G A CYHR1 Silent p.S133S 0.40 TCGA-AM-5821-01 8 146202330 146202330 C T ZNF252P RNA 0.38 TCGA-AM-5821-01 8 17198960 17198960 C T MTMR7 Missense_Mutation p.R215Q 0.12 deleterious(0.02) possibly_damaging(0.629) TCGA-AM-5821-01 8 18662384 18662384 C T PSD3 Silent p.R553R 0.39 TCGA-AM-5821-01 8 22059378 22059378 A G BMP1 Missense_Mutation p.S724G 0.43 deleterious(0.02) possibly_damaging(0.687) TCGA-AM-5821-01 8 22428475 22428475 G A SORBS3 Missense_Mutation p.R495H 0.25 deleterious(0) probably_damaging(0.989) TCGA-AM-5821-01 8 23150856 23150856 G A R3HCC1 Missense_Mutation p.A169T 0.14 deleterious(0) probably_damaging(0.996) TCGA-AM-5821-01 8 26623597 26623597 G A ADRA1A Intron 0.26 TCGA-AM-5821-01 8 27310672 27310672 G A PTK2B Missense_Mutation p.A864T 0.42 tolerated(0.17) benign(0.002) TCGA-AM-5821-01 8 28574574 28574574 C A EXTL3 Missense_Mutation p.P333Q 0.14 tolerated(0.49) benign(0.063) TCGA-AM-5821-01 8 30706047 30706047 T C TEX15 Missense_Mutation p.N163D 0.15 tolerated(0.06) benign(0.192) TCGA-AM-5821-01 8 31498095 31498095 C T NRG1 Missense_Mutation p.L52F 0.24 deleterious(0.01) benign(0.258) TCGA-AM-5821-01 8 41790747 41790749 GGC - KAT6A In_Frame_Del p.P1664del 0.33 TCGA-AM-5821-01 8 42958744 42958744 C T POMK Missense_Mutation p.P18L 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.492) TCGA-AM-5821-01 8 48697735 48697738 TTCT - PRKDC Frame_Shift_Del p.K3680Nfs*6 0.32 TCGA-AM-5821-01 8 55534029 55534029 G A RP1 Missense_Mutation p.R168H 0.34 tolerated(0.13) benign(0.014) TCGA-AM-5821-01 8 57228627 57228627 C T SDR16C5 Missense_Mutation p.A94T 0.12 tolerated(0.3) benign(0.151) TCGA-AM-5821-01 8 57353862 57353862 T C PENK Missense_Mutation p.E258G 0.09 deleterious(0.01) possibly_damaging(0.703) TCGA-AM-5821-01 8 59405069 59405069 G A CYP7A1 Missense_Mutation p.S353L 0.40 deleterious(0) probably_damaging(0.944) TCGA-AM-5821-01 8 59514034 59514034 C T NSMAF Missense_Mutation p.G427S 0.35 deleterious(0.01) possibly_damaging(0.754) TCGA-AM-5821-01 8 65291810 65291810 T C MIR124-2 RNA 0.32 TCGA-AM-5821-01 8 68087518 68087518 T - CSPP1 Intron 0.27 TCGA-AM-5821-01 8 68956813 68956813 G C PREX2 Missense_Mutation p.D311H 0.09 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 8 73958296 73958296 G A TERF1 Missense_Mutation p.R415Q 0.14 deleterious(0) probably_damaging(0.985) TCGA-AM-5821-01 8 77766413 77766413 C T ZFHX4 Missense_Mutation p.S2419F 0.32 benign(0.252) TCGA-AM-5821-01 8 77768212 77768212 C T ZFHX4 Missense_Mutation p.R3019C 0.45 probably_damaging(0.989) TCGA-AM-5821-01 8 79648715 79648715 C A IL7 Missense_Mutation p.K136N 0.36 tolerated(0.15) possibly_damaging(0.728) TCGA-AM-5821-01 8 87163720 87163720 T G ATP6V0D2 Missense_Mutation p.V281G 0.39 tolerated(0.38) benign(0.002) TCGA-AM-5821-01 8 87226834 87226834 C T SLC7A13 Silent p.V407V 0.25 TCGA-AM-5821-01 8 89198710 89198710 A C MMP16 Silent p.T133T 0.38 TCGA-AM-5821-01 8 90937134 90937134 C T OSGIN2 Missense_Mutation p.R342C 0.34 tolerated(0.1) benign(0.002) TCGA-AM-5821-01 8 94745625 94745626 CT - RBM12B 3'UTR 0.35 TCGA-AM-5821-01 8 94936619 94936619 T - PDP1 3'UTR 0.08 TCGA-AM-5821-01 8 95556145 95556145 C T KIAA1429 Missense_Mutation p.R30H 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-AM-5821-01 8 95674504 95674504 A G ESRP1 Silent p.L165L 0.38 TCGA-AM-5821-01 8 95902736 95902737 - T CCNE2 Frame_Shift_Ins p.E121Gfs*7 0.26 TCGA-AM-5821-01 8 96168841 96168843 TGT - PLEKHF2 3'UTR 0.36 TCGA-AM-5821-01 8 97172636 97172636 G A GDF6 Silent p.H95H 0.12 TCGA-AM-5821-01 8 97172890 97172890 C T GDF6 Missense_Mutation p.V11I 0.43 tolerated(0.22) benign(0.003) TCGA-AM-5821-01 8 97258129 97258129 G A MTERFD1 Silent p.L286L 0.43 TCGA-AM-5821-01 8 99139844 99139844 G A POP1 Missense_Mutation p.R55Q 0.22 tolerated(0.51) benign(0.003) TCGA-AM-5821-01 9 100057230 100057230 G T CCDC180 5'UTR 0.13 TCGA-AM-5821-01 9 100700380 100700380 A G HEMGN Silent p.H13H 0.35 TCGA-AM-5821-01 9 101068411 101068411 C T GABBR2 Missense_Mutation p.V741M 0.39 deleterious(0.03) possibly_damaging(0.782) TCGA-AM-5821-01 9 101536286 101536286 G A ANKS6 Missense_Mutation p.S565F 0.38 deleterious(0) probably_damaging(0.928) TCGA-AM-5821-01 9 107267333 107267333 G A OR13F1 Missense_Mutation p.A264T 0.31 deleterious(0.03) benign(0.046) TCGA-AM-5821-01 9 109687846 109687846 A G ZNF462 Silent p.P551P 0.09 TCGA-AM-5821-01 9 111800329 111800330 AT - TMEM245 Frame_Shift_Del p.M731Vfs*34 0.24 TCGA-AM-5821-01 9 111853394 111853394 A G TMEM245 Missense_Mutation p.S320P 0.14 tolerated(0.34) benign(0.187) TCGA-AM-5821-01 9 112151620 112151620 C T PTPN3 Missense_Mutation p.A716T 0.12 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 9 114147671 114147671 A G KIAA0368 Silent p.I1371I 0.30 TCGA-AM-5821-01 9 116930332 116930332 G A COL27A1 Missense_Mutation p.R166H 0.27 unknown(0) TCGA-AM-5821-01 9 117092284 117092284 G A ORM2 Missense_Mutation p.A34T 0.36 tolerated(0.05) benign(0.078) TCGA-AM-5821-01 9 118982354 118982354 C T PAPPA Missense_Mutation p.T686M 0.31 tolerated(0.16) benign(0) TCGA-AM-5821-01 9 119462238 119462238 G T TRIM32 3'UTR 0.32 TCGA-AM-5821-01 9 119903640 119903640 G A ASTN2 Intron 0.34 TCGA-AM-5821-01 9 123902995 123902995 G A CNTRL Missense_Mutation p.R805H 0.27 benign(0.001) TCGA-AM-5821-01 9 124522572 124522572 A G DAB2IP Missense_Mutation p.M314V 0.26 deleterious(0.03) probably_damaging(0.924) TCGA-AM-5821-01 9 124929162 124929162 G A MORN5 Missense_Mutation p.D55N 0.24 tolerated(0.26) benign(0.035) TCGA-AM-5821-01 9 127215957 127215957 T C GPR144 Splice_Site p.X327_splice 0.23 TCGA-AM-5821-01 9 127300473 127300474 - G NR6A1 Frame_Shift_Ins p.Q241Pfs*33 0.14 TCGA-AM-5821-01 9 130477839 130477839 G - PTRH1 Frame_Shift_Del p.P27Rfs*69 0.26 TCGA-AM-5821-01 9 130884691 130884691 C A PTGES2 Missense_Mutation p.G319C 0.13 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 9 130941559 130941559 T C CIZ1 Silent p.P309P 0.17 TCGA-AM-5821-01 9 131222848 131222848 G A ODF2 Intron 0.24 TCGA-AM-5821-01 9 131669674 131669674 G A LRRC8A Silent p.P77P 0.30 TCGA-AM-5821-01 9 134136311 134136311 C T FAM78A Silent p.P250P 0.18 TCGA-AM-5821-01 9 135201742 135201742 A - SETX Frame_Shift_Del p.F1748Sfs*3 0.17 TCGA-AM-5821-01 9 135753607 135753607 G - AK8 Frame_Shift_Del p.E13Rfs*14 0.48 TCGA-AM-5821-01 9 136199569 136199569 C T SURF6 Missense_Mutation p.A141T 0.39 tolerated(0.57) benign(0.229) TCGA-AM-5821-01 9 136379781 136379781 T C TMEM8C Missense_Mutation p.T215A 0.25 tolerated(0.45) benign(0.015) TCGA-AM-5821-01 9 136804273 136804273 G A VAV2 Silent p.S91S 0.33 TCGA-AM-5821-01 9 137293682 137293682 C T RXRA Missense_Mutation p.S78L 0.34 tolerated(0.18) benign(0.164) TCGA-AM-5821-01 9 137804983 137804983 C T FCN1 Missense_Mutation p.R116H 0.16 deleterious(0.01) benign(0.102) TCGA-AM-5821-01 9 138661857 138661857 G A KCNT1 Silent p.A525A 0.30 TCGA-AM-5821-01 9 139325466 139325466 C T INPP5E Silent p.T551T 0.18 TCGA-AM-5821-01 9 139370185 139370185 C T SEC16A Missense_Mutation p.R628H 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-AM-5821-01 9 139413116 139413116 G A NOTCH1 Silent p.A342A 0.35 TCGA-AM-5821-01 9 140115423 140115424 - C RNF208 Frame_Shift_Ins p.D81Gfs*20 0.31 TCGA-AM-5821-01 9 140459476 140459476 T C DPH7 Intron 0.26 TCGA-AM-5821-01 9 17484378 17484378 C T CNTLN Missense_Mutation p.A1314V 0.12 tolerated(0.09) benign(0.034) TCGA-AM-5821-01 9 17795623 17795623 G A SH3GL2 Missense_Mutation p.G314D 0.11 deleterious(0.02) benign(0.269) TCGA-AM-5821-01 9 18777007 18777007 C - ADAMTSL1 Frame_Shift_Del p.F929Sfs*29 0.25 TCGA-AM-5821-01 9 19450667 19450667 G A ACER2 3'UTR 0.19 TCGA-AM-5821-01 9 2123719 2123719 C T SMARCA2 Missense_Mutation p.R1255W 0.29 possibly_damaging(0.689) TCGA-AM-5821-01 9 21333097 21333097 G A KLHL9 Nonsense_Mutation p.R588* 0.33 TCGA-AM-5821-01 9 22009119 22009119 G A CDKN2B 5'UTR 0.15 TCGA-AM-5821-01 9 2641415 2641415 G A VLDLR Missense_Mutation p.A122T 0.30 tolerated(0.08) benign(0.037) TCGA-AM-5821-01 9 33338558 33338558 C T NFX1 Missense_Mutation p.R696W 0.19 deleterious(0) probably_damaging(0.955) TCGA-AM-5821-01 9 33442267 33442267 G A AQP3 Intron 0.60 TCGA-AM-5821-01 9 33465757 33465757 G A NOL6 Missense_Mutation p.P835S 0.13 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 9 35045326 35045326 C A C9orf131 Silent p.S900S 0.24 TCGA-AM-5821-01 9 35605734 35605734 T C TESK1 Missense_Mutation p.S40P 0.09 deleterious(0) possibly_damaging(0.883) TCGA-AM-5821-01 9 35800404 35800404 T C NPR2 Missense_Mutation p.V381A 0.26 tolerated(0.57) benign(0.012) TCGA-AM-5821-01 9 37034096 37034096 T C PAX5 5'UTR 0.33 TCGA-AM-5821-01 9 406969 406969 G A DOCK8 Missense_Mutation p.A1144T 0.14 tolerated(0.25) benign(0.024) TCGA-AM-5821-01 9 43628368 43628368 G A SPATA31A6 Missense_Mutation p.P107S 0.22 tolerated(0.3) possibly_damaging(0.721) TCGA-AM-5821-01 9 4826997 4826997 T C RCL1 Silent p.V116V 0.28 TCGA-AM-5821-01 9 5077528 5077528 T C JAK2 Missense_Mutation p.I647T 0.36 tolerated(0.66) probably_damaging(0.967) TCGA-AM-5821-01 9 67785439 67785439 C T FAM27E3 3'UTR 0.16 TCGA-AM-5821-01 9 71863266 71863266 G T TJP2 Intron 0.33 TCGA-AM-5821-01 9 72064674 72064674 C A APBA1 Silent p.V669V 0.31 TCGA-AM-5821-01 9 740846 740846 C A KANK1 Missense_Mutation p.A1203E 0.11 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 9 75435872 75435872 C A TMC1 Silent p.V626V 0.35 TCGA-AM-5821-01 9 88272535 88272535 C T AGTPBP1 Missense_Mutation p.D242N 0.12 tolerated(0.7) probably_damaging(0.978) TCGA-AM-5821-01 9 90589388 90589388 C A CDK20 5'UTR 0.30 TCGA-AM-5821-01 9 94486237 94486237 C T ROR2 Missense_Mutation p.A847T 0.16 tolerated_low_confidence(0.07) possibly_damaging(0.678) TCGA-AM-5821-01 9 94809966 94809966 C T SPTLC1 Missense_Mutation p.A305T 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-AM-5821-01 9 96015286 96015286 C T WNK2 Silent p.C652C 0.15 TCGA-AM-5821-01 X 100088459 100088459 C T CSTF2 Nonsense_Mutation p.Q500* 0.46 TCGA-AM-5821-01 X 100536725 100536725 G A TAF7L Missense_Mutation p.R235W 0.11 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 X 101818195 101818195 T G NXF4 RNA 0.15 TCGA-AM-5821-01 X 10182016 10182016 G A CLCN4 Silent p.T624T 0.11 TCGA-AM-5821-01 X 101911613 101911613 C A GPRASP1 Nonsense_Mutation p.C924* 0.08 TCGA-AM-5821-01 X 102529381 102529381 G A TCEAL5 Silent p.D37D 0.41 TCGA-AM-5821-01 X 103498909 103498909 G A ESX1 Silent p.T144T 0.46 TCGA-AM-5821-01 X 107976241 107976241 G T IRS4 Missense_Mutation p.L1112I 0.45 tolerated_low_confidence(0.31) unknown(0) TCGA-AM-5821-01 X 118986834 118986834 C T UPF3B Missense_Mutation p.A20T 0.16 tolerated(0.59) benign(0.017) TCGA-AM-5821-01 X 119293210 119293210 C T RHOXF2 Silent p.G123G 0.14 TCGA-AM-5821-01 X 119387861 119387861 T G ZBTB33 Missense_Mutation p.F197L 0.14 deleterious(0) probably_damaging(0.986) TCGA-AM-5821-01 X 123775729 123775729 T G TENM1 Missense_Mutation p.Q663H 0.18 tolerated(0.57) possibly_damaging(0.629) TCGA-AM-5821-01 X 125299101 125299101 G T DCAF12L2 Silent p.A269A 0.16 TCGA-AM-5821-01 X 12734552 12734552 C A FRMPD4 Missense_Mutation p.F658L 0.27 tolerated_low_confidence(1) benign(0) TCGA-AM-5821-01 X 129203479 129203479 C T ELF4 Missense_Mutation p.R328Q 0.25 tolerated(0.14) benign(0.336) TCGA-AM-5821-01 X 131188797 131188797 G A MST4 Missense_Mutation p.E61K 0.17 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 X 132160965 132160965 A G USP26 Silent p.S428S 0.17 TCGA-AM-5821-01 X 134166904 134166904 G A FAM127A 3'UTR 0.12 TCGA-AM-5821-01 X 135067914 135067914 A G SLC9A6 Missense_Mutation p.I85V 0.10 tolerated(0.59) probably_damaging(0.99) TCGA-AM-5821-01 X 135431510 135431510 C T GPR112 Missense_Mutation p.S1882F 0.20 deleterious(0) possibly_damaging(0.593) TCGA-AM-5821-01 X 135790921 135790921 G T ARHGEF6 Missense_Mutation p.T279N 0.35 tolerated(0.16) benign(0.005) TCGA-AM-5821-01 X 14027145 14027145 C T GEMIN8 Missense_Mutation p.G206R 0.17 deleterious(0.02) benign(0.344) TCGA-AM-5821-01 X 140983319 140983319 C T MAGEC3 Missense_Mutation p.A366V 0.46 tolerated(0.25) benign(0.025) TCGA-AM-5821-01 X 140994186 140994186 T G MAGEC1 Silent p.G332G 0.20 TCGA-AM-5821-01 X 144909174 144909175 - T TMEM257 5'UTR 0.12 TCGA-AM-5821-01 X 148584958 148584958 C T IDS Missense_Mutation p.R101H 0.14 tolerated(0.33) benign(0.034) TCGA-AM-5821-01 X 151336995 151336995 G T GABRA3 Missense_Mutation p.T395N 0.16 tolerated(0.4) benign(0.053) TCGA-AM-5821-01 X 151808907 151808907 G A GABRQ Missense_Mutation p.R73H 0.43 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 X 152612990 152612990 C T ZNF275 Missense_Mutation p.H283Y 0.27 deleterious(0) possibly_damaging(0.837) TCGA-AM-5821-01 X 152773854 152773854 G A BGN Missense_Mutation p.R353H 0.18 deleterious(0) probably_damaging(0.994) TCGA-AM-5821-01 X 152845525 152845525 G A ATP2B3 Silent p.T1144T 0.10 TCGA-AM-5821-01 X 152991452 152991452 C T ABCD1 Missense_Mutation p.S244L 0.37 tolerated(0.7) benign(0.009) TCGA-AM-5821-01 X 153032509 153032509 A C PLXNB3 Missense_Mutation p.Q99P 0.51 deleterious(0) probably_damaging(0.992) TCGA-AM-5821-01 X 153044445 153044445 G A PLXNB3 Missense_Mutation p.R1917H 0.23 deleterious(0) probably_damaging(0.994) TCGA-AM-5821-01 X 153052943 153052943 G A IDH3G Missense_Mutation p.T217M 0.44 deleterious(0.02) probably_damaging(0.99) TCGA-AM-5821-01 X 153689634 153689634 C T PLXNA3 Missense_Mutation p.R264C 0.20 deleterious(0) probably_damaging(1) TCGA-AM-5821-01 X 153706374 153706374 C T LAGE3 Missense_Mutation p.R114H 0.15 tolerated(0.16) benign(0.382) TCGA-AM-5821-01 X 154159130 154159130 A G F8 Missense_Mutation p.W979R 0.15 deleterious(0.01) benign(0.01) TCGA-AM-5821-01 X 17024446 17024446 C T REPS2 Missense_Mutation p.R126W 0.26 deleterious(0) probably_damaging(0.957) TCGA-AM-5821-01 X 18917310 18917310 G A PHKA2 Missense_Mutation p.A1031V 0.09 tolerated(0.59) benign(0.001) TCGA-AM-5821-01 X 20044020 20044020 T C MAP7D2 Missense_Mutation p.Y353C 0.21 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 X 2408091 2408092 - G ZBED1 Frame_Shift_Ins p.N224Qfs*30 0.16 TCGA-AM-5821-01 X 27998734 27998734 T C DCAF8L1 Missense_Mutation p.I240V 0.10 deleterious(0.02) benign(0.027) TCGA-AM-5821-01 X 301560 301560 C T PPP2R3B Missense_Mutation p.A431T 0.17 tolerated(0.22) benign(0.199) TCGA-AM-5821-01 X 30268962 30268962 T G MAGEB1 Missense_Mutation p.F118V 0.25 deleterious(0) possibly_damaging(0.842) TCGA-AM-5821-01 X 3235282 3235282 C T MXRA5 Missense_Mutation p.R2147H 0.16 deleterious(0) benign(0.435) TCGA-AM-5821-01 X 47040965 47040965 G A RBM10 Missense_Mutation p.A499T 0.27 tolerated(0.18) benign(0.278) TCGA-AM-5821-01 X 47426748 47426748 C T ARAF Silent p.G331G 0.22 TCGA-AM-5821-01 X 48418297 48418297 T C TBC1D25 Missense_Mutation p.M334T 0.20 deleterious(0) probably_damaging(0.985) TCGA-AM-5821-01 X 49032567 49032567 G A PRICKLE3 Missense_Mutation p.R435C 0.65 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AM-5821-01 X 50054084 50054084 G A CCNB3 Missense_Mutation p.G972E 0.18 tolerated(0.95) benign(0.005) TCGA-AM-5821-01 X 50213576 50213576 T C DGKK RNA 0.14 TCGA-AM-5821-01 X 53607920 53607920 C A HUWE1 Missense_Mutation p.G1863C 0.16 probably_damaging(0.999) TCGA-AM-5821-01 X 53657957 53657957 G T HUWE1 Silent p.A264A 0.17 TCGA-AM-5821-01 X 54497148 54497148 G - FGD1 Frame_Shift_Del p.P176Hfs*39 0.59 TCGA-AM-5821-01 X 54776206 54776206 C T ITIH6 3'UTR 0.17 TCGA-AM-5821-01 X 56291841 56291841 C A KLF8 Missense_Mutation p.L104I 0.34 tolerated(0.06) probably_damaging(0.994) TCGA-AM-5821-01 X 62944440 62944440 T C ARHGEF9 Missense_Mutation p.E54G 0.12 deleterious(0.03) probably_damaging(0.937) TCGA-AM-5821-01 X 62974204 62974204 C T ARHGEF9 5'UTR 0.18 TCGA-AM-5821-01 X 64139941 64139941 A G ZC4H2 Intron 0.15 TCGA-AM-5821-01 X 66764985 66764985 A G AR 5'UTR 0.37 TCGA-AM-5821-01 X 67421466 67421466 A G OPHN1 Silent p.N340N 0.12 TCGA-AM-5821-01 X 67421480 67421480 C T OPHN1 Missense_Mutation p.D336N 0.10 deleterious(0) probably_damaging(0.998) TCGA-AM-5821-01 X 67937708 67937708 A T STARD8 Missense_Mutation p.S318C 0.20 deleterious(0) probably_damaging(0.94) TCGA-AM-5821-01 X 68725668 68725668 C T FAM155B Silent p.S181S 0.18 TCGA-AM-5821-01 X 69177030 69177030 T C EDA Intron 0.34 TCGA-AM-5821-01 X 69510610 69510610 G A KIF4A Missense_Mutation p.V64I 0.22 deleterious(0.03) benign(0.074) TCGA-AM-5821-01 X 69646854 69646854 C - GDPD2 Frame_Shift_Del p.M234Cfs*8 0.18 TCGA-AM-5821-01 X 71351478 71351478 C T RGAG4 5'UTR 0.24 TCGA-AM-5821-01 X 72434231 72434231 C T NAP1L2 Missense_Mutation p.R33H 0.17 tolerated_low_confidence(0.11) benign(0.001) TCGA-AM-5821-01 X 73961707 73961707 A G KIAA2022 Silent p.S895S 0.18 TCGA-AM-5821-01 X 73961864 73961864 C A KIAA2022 Missense_Mutation p.G843V 0.34 tolerated(0.3) benign(0.002) TCGA-AM-5821-01 X 76940011 76940011 C T ATRX Missense_Mutation p.R246H 0.19 probably_damaging(0.992) TCGA-AM-5821-01 X 77275824 77275824 G A ATP7A Missense_Mutation p.A904T 0.23 deleterious(0) probably_damaging(0.909) TCGA-AM-5821-01 X 77528554 77528554 C T CYSLTR1 Silent p.K230K 0.17 TCGA-AM-5821-01 X 83319281 83319281 A T RPS6KA6 3'UTR 0.19 TCGA-AM-5821-01 X 8502400 8502400 C A KAL1 Missense_Mutation p.K648N 0.36 deleterious(0) benign(0.169) TCGA-AM-5821-01 X 85404052 85404052 G A DACH2 Missense_Mutation p.R143H 0.15 deleterious(0) probably_damaging(0.973) TCGA-AM-5821-01 X 85969663 85969663 C G DACH2 Missense_Mutation p.N348K 0.35 deleterious(0) probably_damaging(0.999) TCGA-AM-5821-01 X 88008721 88008721 T C CPXCR1 Silent p.S102S 0.25 TCGA-AM-5821-01 X 88008933 88008933 T C CPXCR1 Missense_Mutation p.V173A 0.20 deleterious(0.01) possibly_damaging(0.728) TCGA-AM-5821-01 X 90689731 90689731 G A PABPC5 5'Flank 0.17 TCGA-AM-5821-01 X 92965700 92965700 C A FAM133A 3'UTR 0.17 TCGA-AM-5821-01 X 9693735 9693735 A G GPR143 3'UTR 0.21 TCGA-AM-5821-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.33 TCGA-AU-3779-01 10 101997837 101997837 C T CWF19L1 Missense_Mutation p.R399Q 0.11 tolerated(0.45) benign(0.001) TCGA-AU-3779-01 10 112769125 112769125 A T SHOC2 Silent p.A468A 0.06 TCGA-AU-3779-01 10 126715839 126715839 G T CTBP2 Missense_Mutation p.L164M 0.29 tolerated_low_confidence(0.18) possibly_damaging(0.776) TCGA-AU-3779-01 10 29813620 29813620 C T SVIL Silent p.K789K 0.15 TCGA-AU-3779-01 10 37482132 37482132 G A ANKRD30A Missense_Mutation p.V798I 0.25 tolerated(0.35) benign(0.001) TCGA-AU-3779-01 10 45938547 45938547 C T ALOX5 Missense_Mutation p.T445I 0.61 deleterious(0) probably_damaging(0.985) TCGA-AU-3779-01 10 49609815 49609815 G C MAPK8 Missense_Mutation p.G38R 0.53 deleterious(0) probably_damaging(1) TCGA-AU-3779-01 10 61835193 61835193 T A ANK3 Missense_Mutation p.T1816S 0.53 probably_damaging(0.935) TCGA-AU-3779-01 10 61835207 61835207 G C ANK3 Missense_Mutation p.T1811S 0.50 probably_damaging(0.935) TCGA-AU-3779-01 10 72538188 72538188 C T TBATA Intron 0.69 TCGA-AU-3779-01 10 75413203 75413203 G A SYNPO2L Nonsense_Mutation p.R156* 0.30 TCGA-AU-3779-01 10 75758056 75758056 G T VCL Nonsense_Mutation p.E31* 0.18 TCGA-AU-3779-01 10 82126536 82126536 C T DYDC2 Silent p.F135F 0.51 TCGA-AU-3779-01 10 93593733 93593733 T G TNKS2 Missense_Mutation p.F467V 0.17 tolerated(0.29) possibly_damaging(0.647) TCGA-AU-3779-01 11 55606641 55606641 C A OR5D16 Silent p.I138I 0.61 TCGA-AU-3779-01 11 55681278 55681278 G A OR5W2 Missense_Mutation p.R261W 0.63 deleterious(0.02) possibly_damaging(0.519) TCGA-AU-3779-01 11 74705760 74705760 G A NEU3 Missense_Mutation p.V101I 0.54 deleterious(0.04) possibly_damaging(0.841) TCGA-AU-3779-01 12 10005915 10005915 C T CLEC2B Missense_Mutation p.R145K 0.23 tolerated(0.37) benign(0.115) TCGA-AU-3779-01 12 10206868 10206868 A G CLEC9A Splice_Site p.X31_splice 0.19 TCGA-AU-3779-01 12 124363819 124363819 C T DNAH10 Missense_Mutation p.T2676M 0.36 possibly_damaging(0.678) TCGA-AU-3779-01 12 1755162 1755162 C T WNT5B Missense_Mutation p.P275L 0.40 tolerated(0.26) benign(0.05) TCGA-AU-3779-01 12 7882298 7882298 C T CLEC4C Missense_Mutation p.R179H 0.42 tolerated(0.07) benign(0.054) TCGA-AU-3779-01 12 96407608 96407608 C T LTA4H Missense_Mutation p.A410T 0.37 tolerated(0.07) benign(0.08) TCGA-AU-3779-01 13 100204528 100204528 G A TM9SF2 Missense_Mutation p.C479Y 0.15 deleterious(0) possibly_damaging(0.903) TCGA-AU-3779-01 13 113826335 113826335 G A PROZ Silent p.S395S 0.29 TCGA-AU-3779-01 13 50025939 50025939 A G SETDB2 5'UTR 0.24 TCGA-AU-3779-01 13 84454333 84454333 G T SLITRK1 Missense_Mutation p.T437K 0.42 tolerated(0.6) benign(0.011) TCGA-AU-3779-01 14 104573199 104573199 G A ASPG Missense_Mutation p.D413N 0.39 tolerated(0.14) benign(0.057) TCGA-AU-3779-01 14 106170851 106170851 G A IGHA1 3'Flank 0.24 TCGA-AU-3779-01 14 107131194 107131194 C T IGHV3-66 Missense_Mutation p.G63R 0.59 tolerated_low_confidence(0.06) possibly_damaging(0.763) TCGA-AU-3779-01 14 34268963 34268963 G A NPAS3 Missense_Mutation p.D484N 0.58 tolerated(0.21) benign(0.281) TCGA-AU-3779-01 15 62253983 62253983 C T VPS13C Missense_Mutation p.R1238H 0.26 deleterious(0) probably_damaging(0.999) TCGA-AU-3779-01 16 3169795 3169795 G A ZNF205 Silent p.T378T 0.32 TCGA-AU-3779-01 16 86544699 86544699 C T FOXF1 Missense_Mutation p.S175L 0.24 deleterious(0) benign(0.075) TCGA-AU-3779-01 16 90161619 90161619 G A TUBB8P7 RNA 0.16 TCGA-AU-3779-01 17 10539158 10539158 C T MYH3 Missense_Mutation p.R1290H 0.28 tolerated(0.08) probably_damaging(0.995) TCGA-AU-3779-01 17 31107778 31107778 C T MYO1D Silent p.T40T 0.32 TCGA-AU-3779-01 17 40476866 40476866 T G STAT3 Splice_Site p.X489_splice 0.23 TCGA-AU-3779-01 17 41958657 41958657 G A MPP2 Missense_Mutation p.R292W 0.23 deleterious(0) probably_damaging(0.999) TCGA-AU-3779-01 17 43367997 43367997 C T MAP3K14 RNA 0.23 TCGA-AU-3779-01 17 58348793 58348793 C G USP32 Missense_Mutation p.K207N 0.40 deleterious(0) probably_damaging(0.977) TCGA-AU-3779-01 17 59445778 59445778 C T BCAS3 Missense_Mutation p.T854M 0.19 tolerated(0.23) benign(0.121) TCGA-AU-3779-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.61 tolerated(0.11) benign(0.308) TCGA-AU-3779-01 17 76422538 76422538 C T AC061992.1 Missense_Mutation p.P44S 0.29 unknown(0) TCGA-AU-3779-01 18 32455356 32455356 G A DTNA Missense_Mutation p.A546T 0.12 tolerated(0.11) benign(0.073) TCGA-AU-3779-01 19 19416679 19416679 C T SUGP1 Missense_Mutation p.E173K 0.21 deleterious_low_confidence(0.05) possibly_damaging(0.655) TCGA-AU-3779-01 19 23406379 23406379 T A ZNF724P Missense_Mutation p.Q223L 0.50 deleterious(0) possibly_damaging(0.587) TCGA-AU-3779-01 19 33621190 33621190 A T GPATCH1 3'UTR 0.66 TCGA-AU-3779-01 19 36831227 36831227 T A ZFP14 Missense_Mutation p.I501F 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-AU-3779-01 19 4448379 4448379 T A UBXN6 Missense_Mutation p.M159L 0.18 tolerated(0.44) benign(0.147) TCGA-AU-3779-01 19 48542497 48542497 C T CABP5 Missense_Mutation p.G106S 0.21 tolerated(0.08) possibly_damaging(0.833) TCGA-AU-3779-01 19 51021813 51021813 C T LRRC4B Missense_Mutation p.R386H 0.35 deleterious(0.01) probably_damaging(0.944) TCGA-AU-3779-01 19 8953358 8953358 G A MBD3L1 Missense_Mutation p.A2T 0.24 tolerated(0.34) benign(0.001) TCGA-AU-3779-01 1 155917615 155917615 C A ARHGEF2 3'UTR 0.52 TCGA-AU-3779-01 1 186643553 186643553 A G PTGS2 Missense_Mutation p.S583P 0.19 tolerated(0.08) benign(0.003) TCGA-AU-3779-01 1 247588540 247588540 A C NLRP3 Missense_Mutation p.K599Q 0.25 deleterious(0.02) possibly_damaging(0.641) TCGA-AU-3779-01 1 33841078 33841078 G A PHC2 Silent p.S21S 0.34 TCGA-AU-3779-01 1 39340937 39340937 G A GJA9 Silent p.L278L 0.25 TCGA-AU-3779-01 1 47905198 47905198 C T FOXD2 Missense_Mutation p.A464V 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-AU-3779-01 1 54640340 54640340 C A CYB5RL Missense_Mutation p.R300S 0.40 tolerated(0.12) benign(0.014) TCGA-AU-3779-01 1 91813009 91813009 T C HFM1 Missense_Mutation p.D744G 0.27 tolerated(0.39) benign(0.065) TCGA-AU-3779-01 1 92642525 92642525 G A KIAA1107 Missense_Mutation p.S154N 0.29 tolerated(0.16) benign(0.019) TCGA-AU-3779-01 20 24973324 24973324 T C APMAP Translation_Start_Site p.M1? 0.18 deleterious(0) possibly_damaging(0.889) TCGA-AU-3779-01 20 31624273 31624273 G T BPIFB6 Missense_Mutation p.M200I 0.46 tolerated(0.62) benign(0.005) TCGA-AU-3779-01 20 40744695 40744695 G A PTPRT Intron 0.34 TCGA-AU-3779-01 20 40770575 40770575 C A PTPRT Missense_Mutation p.R917L 0.35 deleterious(0) benign(0.4) TCGA-AU-3779-01 20 44986365 44986365 G A SLC35C2 Silent p.I56I 0.11 TCGA-AU-3779-01 21 33719626 33719626 C A URB1 Silent p.L1169L 0.32 TCGA-AU-3779-01 21 39671534 39671534 G A KCNJ15 Silent p.A117A 0.18 TCGA-AU-3779-01 21 44840297 44840297 G A SIK1 Silent p.P263P 0.25 TCGA-AU-3779-01 22 26937503 26937503 G A TPST2 Missense_Mutation p.R32W 0.77 tolerated_low_confidence(0.14) benign(0.306) TCGA-AU-3779-01 2 163302814 163302814 A T KCNH7 Missense_Mutation p.I423K 0.24 deleterious(0) possibly_damaging(0.905) TCGA-AU-3779-01 2 166179705 166179705 C T SCN2A Missense_Mutation p.R571C 0.43 deleterious(0) probably_damaging(0.988) TCGA-AU-3779-01 2 179656920 179656920 C A TTN Missense_Mutation p.R514I 0.16 TCGA-AU-3779-01 2 223919152 223919152 G T KCNE4 3'UTR 0.23 TCGA-AU-3779-01 2 80529941 80529941 C T LRRTM1 Missense_Mutation p.R335H 0.23 tolerated(0.35) benign(0.002) TCGA-AU-3779-01 2 99439638 99439638 G A KIAA1211L Silent p.P366P 0.34 TCGA-AU-3779-01 3 121341410 121341410 G T FBXO40 Silent p.V378V 0.25 TCGA-AU-3779-01 3 124738147 124738147 G A HEG1 Missense_Mutation p.S516L 0.22 deleterious(0.02) benign(0.007) TCGA-AU-3779-01 3 128182162 128182162 C T DNAJB8 5'UTR 0.27 TCGA-AU-3779-01 3 167167182 167167182 C A SERPINI2 Nonsense_Mutation p.E325* 0.47 TCGA-AU-3779-01 3 179615927 179615927 C T PEX5L Intron 0.20 TCGA-AU-3779-01 3 183602539 183602539 G A PARL Silent p.V32V 0.41 TCGA-AU-3779-01 3 195936355 195936355 G A ZDHHC19 Silent p.H100H 0.20 TCGA-AU-3779-01 3 36534697 36534697 G T STAC Missense_Mutation p.D248Y 0.55 deleterious(0.01) possibly_damaging(0.548) TCGA-AU-3779-01 3 45636732 45636732 G A LIMD1 Missense_Mutation p.A121T 0.54 tolerated(0.09) benign(0.002) TCGA-AU-3779-01 3 49899768 49899768 C T CAMKV Silent p.S18S 0.25 TCGA-AU-3779-01 4 147560404 147560404 G A POU4F2 Missense_Mutation p.A38T 0.75 deleterious_low_confidence(0.01) unknown(0) TCGA-AU-3779-01 4 156764843 156764843 C T ASIC5 Missense_Mutation p.R284H 0.43 tolerated(0.1) benign(0.223) TCGA-AU-3779-01 4 1843336 1843336 G A LETM1 Missense_Mutation p.S111L 0.35 tolerated(0.06) possibly_damaging(0.604) TCGA-AU-3779-01 4 72623829 72623829 A T GC Missense_Mutation p.L273Q 0.61 deleterious(0) probably_damaging(0.999) TCGA-AU-3779-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.55 TCGA-AU-3779-01 5 112175322 112175322 C A APC Nonsense_Mutation p.S1344* 0.18 TCGA-AU-3779-01 5 112926865 112926865 G A YTHDC2 Missense_Mutation p.R1318Q 0.21 tolerated(0.45) benign(0.001) TCGA-AU-3779-01 5 138209307 138209307 A C LRRTM2 Missense_Mutation p.C315G 0.42 deleterious(0) probably_damaging(0.998) TCGA-AU-3779-01 5 138209309 138209309 T A LRRTM2 Missense_Mutation p.E314V 0.43 deleterious(0) probably_damaging(0.942) TCGA-AU-3779-01 5 13862840 13862840 G A DNAH5 Missense_Mutation p.A1538V 0.21 possibly_damaging(0.798) TCGA-AU-3779-01 5 140574090 140574090 C T PCDHB10 Silent p.T655T 0.54 TCGA-AU-3779-01 5 169805927 169805927 G A KCNMB1 Silent p.D119D 0.35 TCGA-AU-3779-01 5 7804735 7804735 T C ADCY2 Missense_Mutation p.I938T 0.15 deleterious(0) probably_damaging(1) TCGA-AU-3779-01 5 82875931 82875931 G A VCAN Missense_Mutation p.R3338Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-AU-3779-01 6 147830109 147830109 T C SAMD5 Silent p.L15L 0.29 TCGA-AU-3779-01 6 32155551 32155551 C T PBX2 Missense_Mutation p.R248H 0.20 deleterious(0) probably_damaging(0.998) TCGA-AU-3779-01 6 34804117 34804117 G A UHRF1BP1 Missense_Mutation p.R342Q 0.22 tolerated(0.18) benign(0.035) TCGA-AU-3779-01 6 38841028 38841028 G A DNAH8 Missense_Mutation p.R2282H 0.27 benign(0.049) TCGA-AU-3779-01 6 57046876 57046876 G T BAG2 Nonsense_Mutation p.E54* 0.29 TCGA-AU-3779-01 6 64421567 64421567 T C PHF3 Silent p.T1361T 0.08 TCGA-AU-3779-01 6 84669687 84669687 A C CYB5R4 3'UTR 0.34 TCGA-AU-3779-01 7 100731739 100731739 C T TRIM56 Silent p.D382D 0.35 TCGA-AU-3779-01 7 124387057 124387057 G A GPR37 Missense_Mutation p.T455M 0.27 tolerated(0.12) probably_damaging(0.951) TCGA-AU-3779-01 7 128097665 128097665 C T HILPDA 3'UTR 0.33 TCGA-AU-3779-01 7 151896440 151896440 C T KMT2C Missense_Mutation p.M1399I 0.30 benign(0.01) TCGA-AU-3779-01 7 21737795 21737795 G A DNAH11 Silent p.T2055T 0.04 TCGA-AU-3779-01 7 2984029 2984029 C T CARD11 Silent p.T167T 0.14 TCGA-AU-3779-01 7 38574553 38574553 A G AMPH Missense_Mutation p.V43A 0.10 deleterious(0) possibly_damaging(0.863) TCGA-AU-3779-01 7 42950020 42950020 A G C7orf25 Silent p.Y218Y 0.17 TCGA-AU-3779-01 7 8791422 8791422 G A NXPH1 3'UTR 0.11 TCGA-AU-3779-01 8 104513185 104513185 C T RIMS2 Missense_Mutation p.P24L 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AU-3779-01 8 110498941 110498941 G A PKHD1L1 Silent p.L3257L 0.20 TCGA-AU-3779-01 8 2808777 2808777 C T CSMD1 Missense_Mutation p.V3354I 0.18 benign(0.001) TCGA-AU-3779-01 8 77767276 77767276 T A ZFHX4 Missense_Mutation p.Y2707N 0.23 probably_damaging(0.994) TCGA-AU-3779-01 9 131481969 131481969 C T PKN3 Silent p.I710I 0.57 TCGA-AU-3779-01 9 131767584 131767584 C T NUP188 Silent p.N1504N 0.63 TCGA-AU-3779-01 9 136915667 136915667 G A BRD3 Silent p.T181T 0.31 TCGA-AU-3779-01 9 19056323 19056323 T C HAUS6 3'UTR 0.31 TCGA-AU-3779-01 X 107979436 107979436 C T IRS4 Missense_Mutation p.G47R 0.43 tolerated_low_confidence(0.25) benign(0.23) TCGA-AU-3779-01 X 127186074 127186074 C T ACTRT1 Missense_Mutation p.V38I 0.18 tolerated(1) benign(0.002) TCGA-AU-3779-01 X 128599922 128599922 A G SMARCA1 Missense_Mutation p.C906R 0.16 tolerated(0.12) possibly_damaging(0.753) TCGA-AU-3779-01 X 128645797 128645797 C A SMARCA1 Missense_Mutation p.G265V 0.18 deleterious(0) probably_damaging(0.999) TCGA-AU-3779-01 X 128926710 128926710 C T SASH3 Silent p.P233P 0.18 TCGA-AU-3779-01 X 135579949 135579949 G A HTATSF1 Missense_Mutation p.G36R 0.38 tolerated(0.12) benign(0.016) TCGA-AU-3779-01 X 140985060 140985060 G T MAGEC3 Nonsense_Mutation p.E506* 0.14 TCGA-AU-3779-01 X 142716351 142716351 C A SLITRK4 3'UTR 0.22 TCGA-AU-3779-01 X 146366241 146366241 G T MIR514A3 RNA 0.15 TCGA-AU-3779-01 X 152821669 152821669 C T ATP2B3 Missense_Mutation p.R741C 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-AU-3779-01 X 153043031 153043031 G A PLXNB3 Missense_Mutation p.V1740M 0.23 deleterious(0.05) benign(0.143) TCGA-AU-3779-01 X 154010017 154010017 G A MPP1 Missense_Mutation p.T336M 0.19 deleterious(0.02) possibly_damaging(0.49) TCGA-AU-3779-01 X 154490502 154490502 G A RAB39B Silent p.R76R 0.36 TCGA-AU-3779-01 X 36103603 36103603 A C CHDC2 Missense_Mutation p.K197Q 0.31 tolerated(0.15) benign(0.403) TCGA-AU-3779-01 X 53112396 53112396 G A TSPYL2 Missense_Mutation p.R239H 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-AU-3779-01 X 70775134 70775134 A G OGT Missense_Mutation p.I275V 0.19 tolerated(0.09) benign(0.124) TCGA-AU-3779-01 X 82763668 82763668 C T POU3F4 Silent p.N112N 0.20 TCGA-AU-3779-01 X 92928042 92928042 G A NAP1L3 Missense_Mutation p.R88W 0.10 tolerated(0.24) benign(0.004) TCGA-AU-6004-01 10 103609591 103609591 A G C10orf76 Missense_Mutation p.L640P 0.18 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 10 104230834 104230834 C T TMEM180 Nonsense_Mutation p.R222* 0.19 TCGA-AU-6004-01 10 105642539 105642539 G A OBFC1 Missense_Mutation p.P337L 0.22 tolerated(0.52) benign(0.246) TCGA-AU-6004-01 10 1070682 1070682 G A IDI2 Intron 0.20 TCGA-AU-6004-01 10 108339000 108339000 C T SORCS1 Silent p.P1127P 0.26 TCGA-AU-6004-01 10 112724088 112724088 A G SHOC2 5'UTR 0.26 TCGA-AU-6004-01 10 112839198 112839198 G A ADRA2A 3'UTR 0.20 TCGA-AU-6004-01 10 114900984 114900984 C - TCF7L2 Frame_Shift_Del p.L200Sfs*25 0.18 TCGA-AU-6004-01 10 115423140 115423141 CA - NRAP Frame_Shift_Del p.V46Efs*12 0.21 TCGA-AU-6004-01 10 115608957 115608957 T - DCLRE1A Frame_Shift_Del p.K636Rfs*31 0.17 TCGA-AU-6004-01 10 115609916 115609916 C T DCLRE1A Silent p.P316P 0.21 TCGA-AU-6004-01 10 115962051 115962051 C T TDRD1 Silent p.N230N 0.21 TCGA-AU-6004-01 10 120354383 120354383 C T PRLHR Missense_Mutation p.R125H 0.31 tolerated(0.19) benign(0.079) TCGA-AU-6004-01 10 120802153 120802153 C T EIF3A Missense_Mutation p.R960H 0.27 deleterious(0) probably_damaging(0.992) TCGA-AU-6004-01 10 121196299 121196299 C T GRK5 Missense_Mutation p.A292V 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-AU-6004-01 10 124325509 124325509 T C DMBT1 Missense_Mutation p.Y30H 0.05 tolerated_low_confidence(0.51) benign(0.374) TCGA-AU-6004-01 10 129901541 129901541 G A MKI67 Silent p.L2855L 0.21 TCGA-AU-6004-01 10 13154538 13154538 C T OPTN Missense_Mutation p.A152V 0.19 deleterious(0.01) benign(0.282) TCGA-AU-6004-01 10 134591194 134591194 G A INPP5A Missense_Mutation p.A333T 0.18 tolerated(0.39) benign(0.019) TCGA-AU-6004-01 10 134664630 134664630 G A TTC40 Silent p.S1918S 0.18 TCGA-AU-6004-01 10 134712579 134712579 G A TTC40 Missense_Mutation p.R1035W 0.20 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 10 135025027 135025027 G A KNDC1 Missense_Mutation p.R1337Q 0.30 tolerated(0.21) possibly_damaging(0.846) TCGA-AU-6004-01 10 135233595 135233595 C T MTG1 Missense_Mutation p.R311C 0.23 deleterious(0.02) benign(0.003) TCGA-AU-6004-01 10 22618539 22618539 G T BMI1 3'UTR 0.26 TCGA-AU-6004-01 10 23633556 23633556 C T C10orf67 Missense_Mutation p.A51T 0.24 deleterious_low_confidence(0.05) benign(0.001) TCGA-AU-6004-01 10 27411889 27411889 C T YME1L1 Silent p.A429A 0.26 TCGA-AU-6004-01 10 27702370 27702370 G A PTCHD3 Silent p.Y270Y 0.26 TCGA-AU-6004-01 10 35896951 35896951 G A GJD4 Silent p.P170P 0.26 TCGA-AU-6004-01 10 35929526 35929526 C T FZD8 Missense_Mutation p.V278I 0.29 tolerated(0.16) benign(0.34) TCGA-AU-6004-01 10 395273 395273 G - DIP2C Frame_Shift_Del p.P1036Qfs*3 0.21 TCGA-AU-6004-01 10 43326628 43326628 G A BMS1 3'UTR 0.18 TCGA-AU-6004-01 10 47086917 47086917 T C NPY4R Missense_Mutation p.V45A 0.15 tolerated(0.31) benign(0.018) TCGA-AU-6004-01 10 47945741 47945741 A G FAM21B Missense_Mutation p.S1081G 0.35 tolerated(0.15) benign(0.043) TCGA-AU-6004-01 10 48372157 48372157 C T ZNF488 3'UTR 0.29 TCGA-AU-6004-01 10 48429429 48429429 G A GDF10 Missense_Mutation p.R153W 0.13 deleterious(0.01) benign(0.049) TCGA-AU-6004-01 10 5014391 5014391 A G AKR1C1 Splice_Site p.X191_splice 0.21 TCGA-AU-6004-01 10 50182944 50182944 C T WDFY4 Missense_Mutation p.A2989V 0.30 deleterious(0.05) possibly_damaging(0.525) TCGA-AU-6004-01 10 5925068 5925068 C T ANKRD16 Silent p.G250G 0.23 TCGA-AU-6004-01 10 61836047 61836047 G A ANK3 Missense_Mutation p.T1531M 0.18 probably_damaging(0.991) TCGA-AU-6004-01 10 64906020 64906020 G A NRBF2 Missense_Mutation p.E28K 0.33 deleterious(0.01) possibly_damaging(0.707) TCGA-AU-6004-01 10 70333536 70333536 T C TET1 Missense_Mutation p.S481P 0.25 tolerated(0.3) benign(0.006) TCGA-AU-6004-01 10 71025341 71025341 C T HKDC1 Silent p.S791S 0.18 TCGA-AU-6004-01 10 71119669 71119669 T C HK1 Silent p.I85I 0.25 TCGA-AU-6004-01 10 75408506 75408506 G A SYNPO2L Missense_Mutation p.R302W 0.08 deleterious(0) probably_damaging(0.997) TCGA-AU-6004-01 10 75849786 75849786 G A VCL Nonsense_Mutation p.W394* 0.18 TCGA-AU-6004-01 10 76735525 76735525 A G KAT6B Missense_Mutation p.H477R 0.13 benign(0.001) TCGA-AU-6004-01 10 81275739 81275739 G A EIF5AL1 3'UTR 0.23 TCGA-AU-6004-01 10 88820465 88820465 C T GLUD1 Missense_Mutation p.A393T 0.22 deleterious(0.03) possibly_damaging(0.57) TCGA-AU-6004-01 10 96005847 96005847 C T PLCE1 Silent p.A855A 0.21 TCGA-AU-6004-01 10 97772289 97772289 T - CC2D2B Frame_Shift_Del p.L42* 0.18 TCGA-AU-6004-01 10 99623991 99623991 C A GOLGA7B Missense_Mutation p.L120I 0.22 deleterious(0.01) probably_damaging(0.925) TCGA-AU-6004-01 11 1000475 1000475 C - AP2A2 Frame_Shift_Del p.P669Lfs*67 0.25 TCGA-AU-6004-01 11 103024200 103024200 G C DYNC2H1 Missense_Mutation p.E1089Q 0.15 benign(0.396) TCGA-AU-6004-01 11 107299560 107299560 T - CWF19L2 Frame_Shift_Del p.E467Nfs*22 0.20 TCGA-AU-6004-01 11 107462624 107462624 C T AP000889.3 Silent p.R47R 0.27 TCGA-AU-6004-01 11 111168075 111168075 C T COLCA1 5'UTR 0.24 TCGA-AU-6004-01 11 111594550 111594550 A G SIK2 Silent p.P826P 0.36 TCGA-AU-6004-01 11 113210160 113210160 G - TTC12 Frame_Shift_Del p.I266Lfs*4 0.23 TCGA-AU-6004-01 11 113269706 113269706 C T ANKK1 Missense_Mutation p.R339W 0.21 tolerated(0.18) benign(0.001) TCGA-AU-6004-01 11 113295179 113295179 C T DRD2 Silent p.L65L 0.24 TCGA-AU-6004-01 11 113570346 113570346 G A TMPRSS5 Missense_Mutation p.A59V 0.19 tolerated(0.17) benign(0.279) TCGA-AU-6004-01 11 117062612 117062612 T C SIDT2 Missense_Mutation p.M585T 0.18 deleterious(0) benign(0.289) TCGA-AU-6004-01 11 118765255 118765255 G A CXCR5 Silent p.S334S 0.24 TCGA-AU-6004-01 11 118773106 118773106 G - BCL9L Frame_Shift_Del p.P449Lfs*14 0.29 TCGA-AU-6004-01 11 118949293 118949293 G A VPS11 Missense_Mutation p.A647T 0.17 tolerated(0.56) benign(0.031) TCGA-AU-6004-01 11 118972239 118972240 CA - DPAGT1 Frame_Shift_Del p.C42Wfs*46 0.26 TCGA-AU-6004-01 11 119024815 119024815 T C ABCG4 Silent p.A106A 0.20 TCGA-AU-6004-01 11 119215613 119215613 G A MFRP Missense_Mutation p.A248V 0.18 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 11 120837916 120837916 G A GRIK4 Missense_Mutation p.R760Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-AU-6004-01 11 12225945 12225945 G A MICAL2 Missense_Mutation p.R138H 0.21 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 11 122828136 122828136 A G C11orf63 Silent p.L692L 0.15 TCGA-AU-6004-01 11 12348802 12348804 GAG - MICALCL In_Frame_Del p.G574del 0.23 TCGA-AU-6004-01 11 1250434 1250434 G T MUC5B Missense_Mutation p.E337D 0.23 unknown(0) TCGA-AU-6004-01 11 1258198 1258198 T C MUC5B Missense_Mutation p.I1034T 0.20 unknown(0) TCGA-AU-6004-01 11 126126690 126126690 G A FAM118B Missense_Mutation p.D309N 0.20 tolerated(0.42) benign(0.385) TCGA-AU-6004-01 11 1265993 1265993 G A MUC5B Missense_Mutation p.R2628H 0.24 unknown(0) TCGA-AU-6004-01 11 132812894 132812894 G A OPCML Missense_Mutation p.R32C 0.22 deleterious(0) probably_damaging(0.953) TCGA-AU-6004-01 11 1475753 1475753 T C BRSK2 Missense_Mutation p.L574P 0.28 deleterious(0.03) probably_damaging(0.921) TCGA-AU-6004-01 11 17742476 17742476 G A MYOD1 Missense_Mutation p.A220T 0.25 tolerated(0.2) benign(0.006) TCGA-AU-6004-01 11 18194714 18194714 C T MRGPRX4 5'UTR 0.24 TCGA-AU-6004-01 11 19854079 19854079 G A NAV2 Missense_Mutation p.R106H 0.23 deleterious(0) benign(0.017) TCGA-AU-6004-01 11 22363119 22363119 G A SLC17A6 Silent p.T44T 0.23 TCGA-AU-6004-01 11 22844518 22844519 - T SVIP 3'UTR 0.34 TCGA-AU-6004-01 11 290715 290715 G - ATHL1 Frame_Shift_Del p.P172Hfs*16 0.20 TCGA-AU-6004-01 11 2950458 2950458 C G PHLDA2 Missense_Mutation p.R46P 0.26 deleterious(0) benign(0.017) TCGA-AU-6004-01 11 3039154 3039154 G A CARS Missense_Mutation p.R554C 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-AU-6004-01 11 31327246 31327246 G A DCDC1 Missense_Mutation p.L224F 0.21 tolerated(0.28) benign(0.088) TCGA-AU-6004-01 11 32461096 32461096 T - WT1 5'Flank 0.25 TCGA-AU-6004-01 11 32611130 32611130 A - EIF3M Frame_Shift_Del p.K161Sfs*5 0.13 TCGA-AU-6004-01 11 32635676 32635676 C G CCDC73 Missense_Mutation p.V730L 0.25 tolerated(0.22) benign(0.026) TCGA-AU-6004-01 11 32955078 32955078 A - QSER1 Frame_Shift_Del p.E632Kfs*8 0.21 TCGA-AU-6004-01 11 33308175 33308175 G A HIPK3 Missense_Mutation p.R72Q 0.28 tolerated(0.59) benign(0.046) TCGA-AU-6004-01 11 33776034 33776034 G A FBXO3 Nonsense_Mutation p.R231* 0.22 TCGA-AU-6004-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.17 TCGA-AU-6004-01 11 3849383 3849383 C T RHOG 5'UTR 0.21 TCGA-AU-6004-01 11 51515836 51515836 C T OR4C46 Silent p.L185L 0.27 TCGA-AU-6004-01 11 5344909 5344909 G T OR51B2 Missense_Mutation p.L207I 0.17 tolerated(0.06) benign(0.314) TCGA-AU-6004-01 11 540710 540710 G A LRRC56 Missense_Mutation p.R9H 0.10 tolerated(0.44) benign(0.001) TCGA-AU-6004-01 11 57099657 57099657 G A SSRP1 Missense_Mutation p.R324C 0.19 deleterious(0.04) benign(0.072) TCGA-AU-6004-01 11 59573903 59573903 C T MRPL16 Missense_Mutation p.G225S 0.24 deleterious(0.02) probably_damaging(1) TCGA-AU-6004-01 11 59573984 59573984 T C MRPL16 Missense_Mutation p.M198V 0.21 tolerated(0.13) benign(0.005) TCGA-AU-6004-01 11 61048629 61048629 G T VWCE Missense_Mutation p.P289H 0.24 deleterious(0.02) possibly_damaging(0.788) TCGA-AU-6004-01 11 61291306 61291307 - C SYT7 Frame_Shift_Ins p.T376Hfs*35 0.22 TCGA-AU-6004-01 11 62284191 62284191 A G AHNAK 3'UTR 0.42 TCGA-AU-6004-01 11 62291247 62291247 T C AHNAK Missense_Mutation p.I3548V 0.24 benign(0.006) TCGA-AU-6004-01 11 62343264 62343264 G A TUT1 Missense_Mutation p.R681W 0.22 tolerated(0.19) benign(0.048) TCGA-AU-6004-01 11 62416994 62416994 C T INTS5 Silent p.T186T 0.19 TCGA-AU-6004-01 11 6281294 6281294 G T CCKBR Nonsense_Mutation p.G46* 0.24 TCGA-AU-6004-01 11 63072158 63072158 G T SLC22A10 Missense_Mutation p.R465S 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-AU-6004-01 11 64569922 64569922 G A MAP4K2 Silent p.C93C 0.29 TCGA-AU-6004-01 11 64876884 64876884 C T VPS51 Silent p.L526L 0.20 TCGA-AU-6004-01 11 65479766 65479766 G - KAT5 Frame_Shift_Del p.A11Rfs*17 0.15 TCGA-AU-6004-01 11 65546079 65546079 C - AP5B1 Frame_Shift_Del p.V629Wfs*27 0.20 TCGA-AU-6004-01 11 65660695 65660695 G A FOSL1 Missense_Mutation p.R160C 0.23 deleterious(0) probably_damaging(0.991) TCGA-AU-6004-01 11 6567860 6567860 C T DNHD1 Silent p.C1897C 0.18 TCGA-AU-6004-01 11 66105719 66105719 G A BRMS1 Missense_Mutation p.S243L 0.29 tolerated(0.11) benign(0.026) TCGA-AU-6004-01 11 66367086 66367086 A G CCS Missense_Mutation p.D136G 0.27 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 11 66807515 66807515 C T SYT12 Silent p.G154G 0.20 TCGA-AU-6004-01 11 67132921 67132921 G A CLCF1 Missense_Mutation p.R122C 0.20 deleterious(0.05) possibly_damaging(0.761) TCGA-AU-6004-01 11 67378531 67378531 C T NDUFV1 Missense_Mutation p.R256C 0.27 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-AU-6004-01 11 67402373 67402373 G - TBX10 Frame_Shift_Del p.F98Sfs*3 0.26 TCGA-AU-6004-01 11 67767097 67767097 A G UNC93B1 Missense_Mutation p.F149S 0.19 deleterious(0) possibly_damaging(0.894) TCGA-AU-6004-01 11 68704244 68704244 G A IGHMBP2 Missense_Mutation p.G766R 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-AU-6004-01 11 69457999 69457999 G A CCND1 Silent p.R133R 0.24 TCGA-AU-6004-01 11 7081200 7081200 G A NLRP14 Silent p.T903T 0.19 TCGA-AU-6004-01 11 71293297 71293297 A C KRTAP5-11 3'UTR 0.21 TCGA-AU-6004-01 11 720579 720579 C T EPS8L2 Intron 0.25 TCGA-AU-6004-01 11 74058237 74058237 A - PGM2L1 Frame_Shift_Del p.S299Lfs*19 0.19 TCGA-AU-6004-01 11 74413974 74413974 T C CHRDL2 Missense_Mutation p.T329A 0.20 tolerated(0.29) benign(0.011) TCGA-AU-6004-01 11 76063497 76063497 T - PRKRIR Frame_Shift_Del p.T233Hfs*7 0.18 TCGA-AU-6004-01 11 77918660 77918660 A G USP35 Silent p.E492E 0.18 TCGA-AU-6004-01 11 8486271 8486271 T - STK33 Frame_Shift_Del p.V147* 0.20 TCGA-AU-6004-01 11 86157428 86157428 G A ME3 Silent p.P494P 0.30 TCGA-AU-6004-01 11 8959574 8959574 C T ASCL3 Silent p.V45V 0.53 TCGA-AU-6004-01 11 92531591 92531591 C T FAT3 Silent p.D1804D 0.25 TCGA-AU-6004-01 11 93103312 93103312 C T CCDC67 Missense_Mutation p.A169V 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-AU-6004-01 11 94801342 94801342 A - SRSF8 3'UTR 0.10 TCGA-AU-6004-01 11 95564397 95564397 A G CEP57 Missense_Mutation p.S494G 0.22 tolerated(0.06) benign(0) TCGA-AU-6004-01 12 10005981 10005981 C T CLEC2B Missense_Mutation p.C123Y 0.23 deleterious(0) benign(0.124) TCGA-AU-6004-01 12 106460826 106460826 G A NUAK1 Silent p.S580S 0.18 TCGA-AU-6004-01 12 108686131 108686131 C T CMKLR1 Nonsense_Mutation p.W203* 0.21 TCGA-AU-6004-01 12 109921415 109921415 G A UBE3B Missense_Mutation p.R20Q 0.22 deleterious(0) probably_damaging(0.995) TCGA-AU-6004-01 12 111099109 111099109 G C HVCN1 Missense_Mutation p.Q56E 0.22 tolerated(0.57) benign(0.005) TCGA-AU-6004-01 12 113515332 113515332 C T DTX1 Silent p.Y121Y 0.35 TCGA-AU-6004-01 12 113553747 113553747 G A RASAL1 Missense_Mutation p.P281S 0.25 tolerated(0.1) benign(0.391) TCGA-AU-6004-01 12 1137223 1137223 A - ERC1 Frame_Shift_Del p.T53Pfs*10 0.10 TCGA-AU-6004-01 12 11420321 11420321 C T PRB3 Silent p.K245K 0.18 TCGA-AU-6004-01 12 114296690 114296690 T C RBM19 Missense_Mutation p.E857G 0.21 deleterious(0) benign(0.364) TCGA-AU-6004-01 12 116446577 116446577 T C MED13L Silent p.S547S 0.20 TCGA-AU-6004-01 12 11905485 11905486 AG - ETV6 Frame_Shift_Del p.D46Lfs*19 0.17 TCGA-AU-6004-01 12 119588964 119588965 - C SRRM4 Frame_Shift_Ins p.N409Kfs*17 0.20 TCGA-AU-6004-01 12 12038893 12038893 A G ETV6 Missense_Mutation p.R396G 0.26 deleterious(0.03) possibly_damaging(0.597) TCGA-AU-6004-01 12 120592814 120592814 G A GCN1L1 Nonsense_Mutation p.R1221* 0.19 TCGA-AU-6004-01 12 12232563 12232563 G A BCL2L14 Silent p.T108T 0.21 TCGA-AU-6004-01 12 123345531 123345531 G T HIP1R Missense_Mutation p.R945S 0.21 tolerated(0.52) benign(0.013) TCGA-AU-6004-01 12 124111543 124111543 C T EIF2B1 Intron 0.31 TCGA-AU-6004-01 12 124831353 124831353 A C NCOR2 Silent p.R1372R 0.25 TCGA-AU-6004-01 12 124848228 124848228 G - NCOR2 Frame_Shift_Del p.I976Sfs*87 0.26 TCGA-AU-6004-01 12 125460034 125460034 G A DHX37 Missense_Mutation p.T304M 0.11 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 12 130648605 130648605 G A FZD10 Missense_Mutation p.R373H 0.18 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 12 130649851 130649851 T - FZD10 3'UTR 0.20 TCGA-AU-6004-01 12 130926519 130926519 T G RIMBP2 Missense_Mutation p.N443H 0.26 tolerated(0.11) probably_damaging(0.966) TCGA-AU-6004-01 12 130926999 130926999 C T RIMBP2 Missense_Mutation p.G283R 0.27 deleterious(0.01) possibly_damaging(0.72) TCGA-AU-6004-01 12 131488796 131488796 G A GPR133 Missense_Mutation p.G404R 0.33 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 12 132250759 132250759 G A SFSWAP Missense_Mutation p.R683H 0.07 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 12 132631856 132631856 G A NOC4L Missense_Mutation p.V126M 0.35 deleterious(0) possibly_damaging(0.848) TCGA-AU-6004-01 12 133295519 133295519 G - PGAM5 Intron 0.13 TCGA-AU-6004-01 12 15742396 15742396 G A PTPRO Missense_Mutation p.V1140M 0.24 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 12 20522723 20522723 G - PDE3A Frame_Shift_Del p.E171Kfs*36 0.21 TCGA-AU-6004-01 12 20903702 20903702 G T SLCO1C1 Missense_Mutation p.R631I 0.20 deleterious(0) probably_damaging(0.997) TCGA-AU-6004-01 12 26733074 26733074 A G ITPR2 Silent p.T1465T 0.16 TCGA-AU-6004-01 12 27069006 27069006 G A ASUN Nonsense_Mutation p.R393* 0.22 TCGA-AU-6004-01 12 31633107 31633107 T C DENND5B Missense_Mutation p.E107G 0.20 deleterious(0) probably_damaging(0.986) TCGA-AU-6004-01 12 32994095 32994095 T C PKP2 Missense_Mutation p.M519V 0.31 deleterious(0.03) benign(0.005) TCGA-AU-6004-01 12 40939175 40939175 T C MUC19 3'UTR 0.23 TCGA-AU-6004-01 12 41967115 41967115 C T PDZRN4 Missense_Mutation p.A845V 0.17 tolerated(0.05) benign(0.026) TCGA-AU-6004-01 12 42523633 42523633 C A GXYLT1 Missense_Mutation p.C81F 0.28 tolerated(0.45) benign(0.082) TCGA-AU-6004-01 12 4920396 4920396 G A KCNA6 Missense_Mutation p.A397T 0.26 deleterious(0) probably_damaging(0.966) TCGA-AU-6004-01 12 49580101 49580101 G A TUBA1A Missense_Mutation p.R123C 0.20 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-AU-6004-01 12 50746861 50746861 C A FAM186A Nonsense_Mutation p.G1252* 0.35 TCGA-AU-6004-01 12 50749321 50749321 C T FAM186A Missense_Mutation p.E432K 0.23 tolerated(0.27) benign(0.145) TCGA-AU-6004-01 12 51458139 51458141 TCT - CSRNP2 In_Frame_Del p.E340del 0.27 TCGA-AU-6004-01 12 52448995 52448995 C T NR4A1 Intron 0.24 TCGA-AU-6004-01 12 52793830 52793830 G A KRT82 Missense_Mutation p.A294V 0.29 deleterious(0) possibly_damaging(0.489) TCGA-AU-6004-01 12 53184014 53184014 C T KRT3 Missense_Mutation p.G567R 0.21 tolerated(0.19) unknown(0) TCGA-AU-6004-01 12 53647518 53647518 G A MFSD5 Missense_Mutation p.R407H 0.26 deleterious(0.05) benign(0.098) TCGA-AU-6004-01 12 56143688 56143688 C - GDF11 3'UTR 0.17 TCGA-AU-6004-01 12 56426358 56426358 A G IKZF4 Silent p.T243T 0.20 TCGA-AU-6004-01 12 56826293 56826293 C T TIMELESS Missense_Mutation p.A183T 0.19 deleterious(0.01) possibly_damaging(0.906) TCGA-AU-6004-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.33 TCGA-AU-6004-01 12 57919747 57919747 T C MBD6 Silent p.H332H 0.05 TCGA-AU-6004-01 12 57920934 57920934 C - MBD6 Frame_Shift_Del p.P671Lfs*4 0.21 TCGA-AU-6004-01 12 58090140 58090140 G A OS9 Missense_Mutation p.R188Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 12 58125149 58125149 G A AGAP2 Silent p.N715N 0.16 TCGA-AU-6004-01 12 58174352 58174352 C T METTL21B Silent p.L202L 0.23 TCGA-AU-6004-01 12 59271224 59271224 G T LRIG3 Missense_Mutation p.H832N 0.28 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 12 64609469 64609469 T - C12orf66 Frame_Shift_Del p.K170Nfs*29 0.16 TCGA-AU-6004-01 12 6562694 6562694 G A TAPBPL Missense_Mutation p.R126H 0.26 tolerated(0.25) benign(0.001) TCGA-AU-6004-01 12 66308756 66308756 A - HMGA2 Intron 0.27 TCGA-AU-6004-01 12 68051181 68051181 A - DYRK2 Frame_Shift_Del p.K166Nfs*21 0.21 TCGA-AU-6004-01 12 6946898 6946898 G T LEPREL2 Nonsense_Mutation p.E571* 0.20 TCGA-AU-6004-01 12 70946657 70946657 T C PTPRB Missense_Mutation p.N1763D 0.26 tolerated(0.68) benign(0.007) TCGA-AU-6004-01 12 72316812 72316812 T C TBC1D15 Missense_Mutation p.V635A 0.22 tolerated(0.75) benign(0.06) TCGA-AU-6004-01 12 72425035 72425035 C T TPH2 Intron 0.21 TCGA-AU-6004-01 12 7805124 7805124 G A APOBEC1 Missense_Mutation p.R118W 0.20 deleterious(0.02) probably_damaging(1) TCGA-AU-6004-01 12 80998892 80998892 T C PTPRQ Missense_Mutation p.I1551T 0.19 deleterious(0) probably_damaging(0.942) TCGA-AU-6004-01 12 85450941 85450941 C T LRRIQ1 Silent p.G790G 0.17 TCGA-AU-6004-01 12 97147665 97147665 T - C12orf55 Frame_Shift_Del p.Q2612Rfs*5 0.21 TCGA-AU-6004-01 13 101287279 101287279 T - TMTC4 Frame_Shift_Del p.K458Rfs*17 0.20 TCGA-AU-6004-01 13 112725887 112725887 A G SOX1 3'UTR 0.26 TCGA-AU-6004-01 13 113158400 113158400 G A TUBGCP3 Silent p.H751H 0.24 TCGA-AU-6004-01 13 113200144 113200144 C T TUBGCP3 Missense_Mutation p.A402T 0.24 tolerated(0.11) benign(0.017) TCGA-AU-6004-01 13 113536260 113536260 C T ATP11A 3'UTR 0.19 TCGA-AU-6004-01 13 114288284 114288286 AGA - TFDP1 In_Frame_Del p.K187del 0.28 TCGA-AU-6004-01 13 114748745 114748745 C T RASA3 3'UTR 0.26 TCGA-AU-6004-01 13 20279900 20279900 C T PSPC1 Missense_Mutation p.A430T 0.10 tolerated(0.18) benign(0.022) TCGA-AU-6004-01 13 24415492 24415492 G A MIPEP Silent p.S414S 0.25 TCGA-AU-6004-01 13 28155828 28155830 TTG - LNX2 In_Frame_Del p.T4del 0.25 TCGA-AU-6004-01 13 28519601 28519601 A G ATP5EP2 3'UTR 0.11 TCGA-AU-6004-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.15 TCGA-AU-6004-01 13 28578215 28578216 GA - FLT3 Frame_Shift_Del p.P986Afs*27 0.24 TCGA-AU-6004-01 13 29933442 29933442 G A MTUS2 Silent p.P993P 0.23 TCGA-AU-6004-01 13 37679509 37679509 C T CSNK1A1L 5'UTR 0.22 TCGA-AU-6004-01 13 39263019 39263019 C T FREM2 Missense_Mutation p.A513V 0.24 tolerated(0.28) benign(0.021) TCGA-AU-6004-01 13 39271911 39271911 A G FREM2 Silent p.A1750A 0.21 TCGA-AU-6004-01 13 39588050 39588050 T C PROSER1 Missense_Mutation p.T447A 0.19 tolerated_low_confidence(0.39) benign(0.002) TCGA-AU-6004-01 13 46287561 46287561 G A SPERT Missense_Mutation p.R134H 0.23 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 13 49781444 49781444 C T FNDC3A Silent p.D1170D 0.20 TCGA-AU-6004-01 13 50056925 50056925 C T SETDB2 Silent p.N415N 0.19 TCGA-AU-6004-01 13 50204784 50204784 G T ARL11 Missense_Mutation p.Q67H 0.16 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 13 50205559 50205559 A G ARL11 3'UTR 0.23 TCGA-AU-6004-01 13 51921328 51921328 C A SERPINE3 Missense_Mutation p.L220I 0.20 tolerated(0.25) benign(0.383) TCGA-AU-6004-01 13 58208648 58208648 G A PCDH17 Silent p.T656T 0.18 TCGA-AU-6004-01 13 67205541 67205541 C T PCDH9 Silent p.S1047S 0.28 TCGA-AU-6004-01 13 67800833 67800833 A - PCDH9 Frame_Shift_Del p.F580Lfs*14 0.17 TCGA-AU-6004-01 13 79190474 79190474 A G RNF219 Silent p.Y474Y 0.24 TCGA-AU-6004-01 13 95840721 95840721 C T ABCC4 Missense_Mutation p.V447M 0.17 deleterious(0) probably_damaging(0.996) TCGA-AU-6004-01 13 96230171 96230171 C T CLDN10 Missense_Mutation p.A197V 0.22 tolerated(0.07) benign(0.005) TCGA-AU-6004-01 14 101347045 101347045 G A RTL1 3'UTR 0.08 TCGA-AU-6004-01 14 101498347 101498347 T - MIR543 RNA 0.24 TCGA-AU-6004-01 14 102499765 102499765 G A DYNC1H1 Missense_Mutation p.V3453I 0.30 benign(0.003) TCGA-AU-6004-01 14 103996340 103996340 C T TRMT61A Silent p.L9L 0.22 TCGA-AU-6004-01 14 103996544 103996544 A G TRMT61A Missense_Mutation p.T77A 0.18 deleterious(0) probably_damaging(0.98) TCGA-AU-6004-01 14 104139676 104139676 G T KLC1 Missense_Mutation p.C390F 0.22 deleterious(0.02) probably_damaging(0.969) TCGA-AU-6004-01 14 105054103 105054103 C - C14orf180 Frame_Shift_Del p.S46Pfs*3 0.21 TCGA-AU-6004-01 14 105208238 105208238 G T ADSSL1 Missense_Mutation p.G326C 0.19 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 14 105239666 105239666 G A AKT1 Silent p.F293F 0.26 TCGA-AU-6004-01 14 105353217 105353217 G A CEP170B Missense_Mutation p.G881S 0.26 tolerated(0.12) benign(0.064) TCGA-AU-6004-01 14 105416287 105416287 C A AHNAK2 Missense_Mutation p.G1834V 0.20 probably_damaging(0.991) TCGA-AU-6004-01 14 105617086 105617087 CA - JAG2 Frame_Shift_Del p.C486Pfs*48 0.19 TCGA-AU-6004-01 14 106053978 106053978 G T IGHA2 Missense_Mutation p.Q181K 0.23 deleterious(0.01) benign(0.001) TCGA-AU-6004-01 14 106173670 106173670 G A IGHA1 Silent p.R299R 0.14 TCGA-AU-6004-01 14 20215773 20215773 T A OR4Q3 Missense_Mutation p.F63I 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-AU-6004-01 14 20344830 20344830 T G OR4K2 Missense_Mutation p.V135G 0.09 deleterious(0) benign(0.397) TCGA-AU-6004-01 14 20916317 20916317 C T OSGEP Missense_Mutation p.R217Q 0.16 tolerated(0.38) benign(0.002) TCGA-AU-6004-01 14 21883994 21883994 C A CHD8 Nonsense_Mutation p.E597* 0.06 TCGA-AU-6004-01 14 21955871 21955871 T C TOX4 Intron 0.12 TCGA-AU-6004-01 14 23794494 23794494 A - BCL2L2-PABPN1 Frame_Shift_Del 0.15 TCGA-AU-6004-01 14 23947221 23947221 C T NGDN Missense_Mutation p.R312W 0.22 deleterious(0) unknown(0) TCGA-AU-6004-01 14 24769894 24769894 G A NOP9 Silent p.T176T 0.19 TCGA-AU-6004-01 14 29261125 29261125 C T C14orf23 Silent p.I54I 0.20 TCGA-AU-6004-01 14 31535407 31535408 - A AP4S1 Frame_Shift_Ins p.F4Ifs*7 0.20 TCGA-AU-6004-01 14 36226075 36226075 G - RALGAPA1 Frame_Shift_Del p.P196Hfs*20 0.18 TCGA-AU-6004-01 14 38061737 38061737 G A FOXA1 Silent p.G84G 0.25 TCGA-AU-6004-01 14 39716859 39716860 - A MIA2 Frame_Shift_Ins p.D364Rfs*5 0.25 TCGA-AU-6004-01 14 45475318 45475318 A G FAM179B Missense_Mutation p.R918G 0.21 deleterious(0.01) benign(0.199) TCGA-AU-6004-01 14 47120524 47120524 C T RPL10L Missense_Mutation p.R139H 0.29 deleterious(0.04) benign(0.109) TCGA-AU-6004-01 14 51099172 51099172 C A ATL1 3'UTR 0.30 TCGA-AU-6004-01 14 51223929 51223929 G A NIN Silent p.Y1273Y 0.17 TCGA-AU-6004-01 14 57070608 57070608 C A TMEM260 Silent p.S140S 0.24 TCGA-AU-6004-01 14 60620761 60620761 T - DHRS7 Frame_Shift_Del p.D104Ifs*9 0.20 TCGA-AU-6004-01 14 60903565 60903565 A - C14orf39 Frame_Shift_Del p.*588E 0.38 TCGA-AU-6004-01 14 60928082 60928082 T - C14orf39 Frame_Shift_Del p.D371Ifs*12 0.17 TCGA-AU-6004-01 14 63416957 63416957 G T KCNH5 Silent p.S421S 0.22 TCGA-AU-6004-01 14 63417112 63417112 T C KCNH5 Missense_Mutation p.I370V 0.19 tolerated(0.1) possibly_damaging(0.873) TCGA-AU-6004-01 14 65009431 65009431 A G HSPA2 Missense_Mutation p.S622G 0.23 tolerated_low_confidence(1) benign(0) TCGA-AU-6004-01 14 65035126 65035126 A - PPP1R36 Frame_Shift_Del p.N167Tfs*12 0.10 TCGA-AU-6004-01 14 65249246 65249246 T C SPTB Missense_Mutation p.K1343R 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-AU-6004-01 14 72055025 72055025 T C SIPA1L1 Missense_Mutation p.S146P 0.28 tolerated(0.28) benign(0.047) TCGA-AU-6004-01 14 74449813 74449813 G A ENTPD5 Nonsense_Mutation p.R117* 0.28 TCGA-AU-6004-01 14 74706352 74706352 A G VSX2 Missense_Mutation p.T30A 0.22 tolerated(0.07) possibly_damaging(0.77) TCGA-AU-6004-01 14 75515001 75515001 A G MLH3 Missense_Mutation p.M453T 0.21 tolerated(0.45) benign(0.004) TCGA-AU-6004-01 14 76249777 76249777 C T TTLL5 Nonsense_Mutation p.R964* 0.17 TCGA-AU-6004-01 14 76330016 76330016 G A TTLL5 Silent p.L1111L 0.20 TCGA-AU-6004-01 14 78217748 78217748 T - SNW1 Frame_Shift_Del p.M82Cfs*44 0.21 TCGA-AU-6004-01 14 81259422 81259422 T - CEP128 Frame_Shift_Del p.K414Nfs*34 0.22 TCGA-AU-6004-01 14 88654454 88654454 C A KCNK10 Splice_Site p.X290_splice 0.27 TCGA-AU-6004-01 14 89082558 89082558 G A EML5 Missense_Mutation p.S1942L 0.20 deleterious(0) probably_damaging(0.931) TCGA-AU-6004-01 14 94088627 94088627 C A UNC79 Missense_Mutation p.P1506Q 0.28 deleterious_low_confidence(0) benign(0.419) TCGA-AU-6004-01 14 95562839 95562840 - A DICER1 Frame_Shift_Ins p.S1473Ffs*4 0.15 TCGA-AU-6004-01 14 96864456 96864461 AGAGGA - AK7 In_Frame_Del p.E55_E56del 0.09 TCGA-AU-6004-01 15 101606000 101606000 G A LRRK1 Missense_Mutation p.M1786I 0.23 tolerated(0.57) benign(0.016) TCGA-AU-6004-01 15 23889822 23889822 C A MAGEL2 Missense_Mutation p.R420M 0.20 deleterious(0.01) possibly_damaging(0.879) TCGA-AU-6004-01 15 24921045 24921045 G T NPAP1 Missense_Mutation p.G11W 0.24 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-AU-6004-01 15 25958953 25958953 G A ATP10A Missense_Mutation p.H738Y 0.23 tolerated(0.12) benign(0.067) TCGA-AU-6004-01 15 27128373 27128373 C T GABRA5 Missense_Mutation p.T90M 0.21 tolerated(0.09) probably_damaging(1) TCGA-AU-6004-01 15 28230225 28230225 G A OCA2 Missense_Mutation p.T450M 0.26 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 15 28389059 28389059 T C HERC2 Missense_Mutation p.N3793S 0.18 benign(0) TCGA-AU-6004-01 15 31294517 31294517 G A TRPM1 Silent p.F1479F 0.06 TCGA-AU-6004-01 15 32929498 32929498 G A ARHGAP11A Missense_Mutation p.V842I 0.13 deleterious(0.05) possibly_damaging(0.84) TCGA-AU-6004-01 15 33023352 33023352 T C GREM1 Missense_Mutation p.V154A 0.20 deleterious(0) probably_damaging(0.981) TCGA-AU-6004-01 15 37390455 37390455 G - MEIS2 Intron 0.13 TCGA-AU-6004-01 15 40708362 40708362 A G IVD Missense_Mutation p.E352G 0.28 deleterious(0.05) benign(0.02) TCGA-AU-6004-01 15 40765242 40765242 A G CHST14 3'UTR 0.21 TCGA-AU-6004-01 15 40914053 40914053 A - CASC5 Frame_Shift_Del p.M558* 0.20 TCGA-AU-6004-01 15 41146120 41146120 C - SPINT1 Frame_Shift_Del p.Q320Rfs*133 0.25 TCGA-AU-6004-01 15 41228642 41228642 C T DLL4 Missense_Mutation p.S486L 0.17 tolerated(0.69) benign(0.087) TCGA-AU-6004-01 15 43075619 43075619 T C TTBK2 Missense_Mutation p.K399E 0.08 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 15 44036714 44036714 G A PDIA3 5'Flank 0.19 TCGA-AU-6004-01 15 49575904 49575904 C A GALK2 Missense_Mutation p.L249M 0.05 deleterious(0.01) possibly_damaging(0.801) TCGA-AU-6004-01 15 55881007 55881007 G A PYGO1 Missense_Mutation p.S15L 0.32 tolerated_low_confidence(0.34) unknown(0) TCGA-AU-6004-01 15 55965591 55965591 C T PRTG Silent p.T610T 0.18 TCGA-AU-6004-01 15 58285174 58285174 C T ALDH1A2 Missense_Mutation p.S218N 0.22 deleterious(0) benign(0.252) TCGA-AU-6004-01 15 64454283 64454284 AC - PPIB Frame_Shift_Del p.V69Sfs*6 0.17 TCGA-AU-6004-01 15 64669042 64669043 - T KIAA0101 Frame_Shift_Ins p.G64Rfs*7 0.21 TCGA-AU-6004-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.18 TCGA-AU-6004-01 15 74326826 74326826 C T PML Silent p.R555R 0.09 TCGA-AU-6004-01 15 79058238 79058238 T C ADAMTS7 Missense_Mutation p.T1339A 0.18 tolerated(0.4) benign(0.05) TCGA-AU-6004-01 15 82335627 82335627 G A MEX3B Silent p.A528A 0.27 TCGA-AU-6004-01 15 82336657 82336657 C T MEX3B Missense_Mutation p.R185H 0.28 deleterious(0) possibly_damaging(0.842) TCGA-AU-6004-01 15 86312171 86312171 G A KLHL25 Missense_Mutation p.R291C 0.06 deleterious(0) possibly_damaging(0.791) TCGA-AU-6004-01 15 90039676 90039676 A C RHCG Missense_Mutation p.F34V 0.19 tolerated(0.58) benign(0.026) TCGA-AU-6004-01 15 91425099 91425099 C T FURIN Silent p.S792S 0.21 TCGA-AU-6004-01 15 98984361 98984361 C T FAM169B Missense_Mutation p.R133H 0.27 tolerated(0.19) benign(0.002) TCGA-AU-6004-01 15 99023970 99023970 G A FAM169B Silent p.L15L 0.19 TCGA-AU-6004-01 15 99671865 99671865 G A SYNM Silent p.S1099S 0.12 TCGA-AU-6004-01 16 1034885 1034885 C T SOX8 Silent p.F280F 0.23 TCGA-AU-6004-01 16 14340931 14340931 A - MKL2 Frame_Shift_Del p.K606Nfs*51 0.22 TCGA-AU-6004-01 16 14743739 14743739 A G BFAR Missense_Mutation p.T183A 0.14 tolerated(0.09) benign(0.158) TCGA-AU-6004-01 16 1496586 1496586 G T CLCN7 3'UTR 0.19 TCGA-AU-6004-01 16 15788110 15788110 C T NDE1 Silent p.V264V 0.19 TCGA-AU-6004-01 16 16215888 16215888 C T ABCC1 Silent p.S1149S 0.23 TCGA-AU-6004-01 16 16297315 16297315 C T ABCC6 Missense_Mutation p.S317N 0.23 tolerated(0.13) benign(0.021) TCGA-AU-6004-01 16 1907910 1907910 A G MEIOB Silent p.S118S 0.15 TCGA-AU-6004-01 16 20492206 20492206 C T ACSM2A Missense_Mutation p.T491M 0.21 deleterious(0) probably_damaging(0.972) TCGA-AU-6004-01 16 2079755 2079755 G A SLC9A3R2 Missense_Mutation p.G129D 0.25 tolerated(0.17) benign(0.001) TCGA-AU-6004-01 16 2256390 2256390 G A MLST8 Missense_Mutation p.R54H 0.27 deleterious(0) possibly_damaging(0.587) TCGA-AU-6004-01 16 2285362 2285362 C - E4F1 Frame_Shift_Del p.E717Rfs*3 0.24 TCGA-AU-6004-01 16 23716267 23716267 C T ERN2 Missense_Mutation p.R312Q 0.14 tolerated(0.28) benign(0.06) TCGA-AU-6004-01 16 27712926 27712926 C T KIAA0556 Missense_Mutation p.T399M 0.07 tolerated(0.14) benign(0.01) TCGA-AU-6004-01 16 28855325 28855325 G A TUFM Silent p.G340G 0.20 TCGA-AU-6004-01 16 30005116 30005116 C T HIRIP3 Missense_Mutation p.R418H 0.17 tolerated(0.13) benign(0.051) TCGA-AU-6004-01 16 30018164 30018164 G A DOC2A Missense_Mutation p.R274C 0.25 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 16 3025332 3025332 G A PKMYT1 Missense_Mutation p.A287V 0.21 deleterious(0) benign(0.372) TCGA-AU-6004-01 16 30510440 30510440 A G ITGAL Silent p.P626P 0.25 TCGA-AU-6004-01 16 30567202 30567202 G A ZNF764 Silent p.C180C 0.21 TCGA-AU-6004-01 16 30673746 30673746 C T FBRS Silent p.S237S 0.26 TCGA-AU-6004-01 16 30721292 30721292 G A SRCAP Missense_Mutation p.R326H 0.06 unknown(0) TCGA-AU-6004-01 16 31309242 31309242 C A ITGAM Silent p.T559T 0.22 TCGA-AU-6004-01 16 31474054 31474054 G T ARMC5 Missense_Mutation p.G396W 0.27 deleterious(0.02) probably_damaging(0.98) TCGA-AU-6004-01 16 31501789 31501789 G A SLC5A2 Missense_Mutation p.R651H 0.20 tolerated(0.62) benign(0.015) TCGA-AU-6004-01 16 32266328 32266328 T C TP53TG3D 3'UTR 0.08 TCGA-AU-6004-01 16 3658590 3658590 T C SLX4 Missense_Mutation p.T126A 0.25 tolerated(0.81) benign(0.057) TCGA-AU-6004-01 16 3778452 3778452 T A CREBBP Missense_Mutation p.Q2199L 0.25 unknown(0) TCGA-AU-6004-01 16 3779278 3779278 C T CREBBP Missense_Mutation p.V1924M 0.24 unknown(0) TCGA-AU-6004-01 16 46865028 46865028 C T C16orf87 Missense_Mutation p.A12T 0.21 tolerated(0.2) possibly_damaging(0.811) TCGA-AU-6004-01 16 47684459 47684459 C T PHKB Missense_Mutation p.A601V 0.26 tolerated(0.1) benign(0.311) TCGA-AU-6004-01 16 4776986 4776986 A G ANKS3 Silent p.L121L 0.26 TCGA-AU-6004-01 16 4953963 4953963 G A PPL Silent p.L81L 0.29 TCGA-AU-6004-01 16 57180157 57180157 G A CPNE2 Missense_Mutation p.R488H 0.27 tolerated(0.06) benign(0.006) TCGA-AU-6004-01 16 57504231 57504231 G A POLR2C Silent p.S216S 0.27 TCGA-AU-6004-01 16 61854981 61854981 A C CDH8 Missense_Mutation p.L291R 0.22 deleterious(0.01) possibly_damaging(0.532) TCGA-AU-6004-01 16 66860487 66860487 C A NAE1 Splice_Site p.X53_splice 0.27 TCGA-AU-6004-01 16 66946460 66946460 C A CDH16 Nonsense_Mutation p.E436* 0.22 TCGA-AU-6004-01 16 67190436 67190436 C A TRADD Missense_Mutation p.R43M 0.18 deleterious(0) benign(0.288) TCGA-AU-6004-01 16 67201726 67201727 - C HSF4 Frame_Shift_Ins p.P323Afs*29 0.10 TCGA-AU-6004-01 16 67381305 67381306 - T LRRC36 Intron 0.39 TCGA-AU-6004-01 16 677527 677527 G A RAB40C Missense_Mutation p.G251S 0.22 tolerated_low_confidence(0.6) benign(0.008) TCGA-AU-6004-01 16 67859145 67859145 C T TSNAXIP1 Missense_Mutation p.R208W 0.24 deleterious(0) possibly_damaging(0.906) TCGA-AU-6004-01 16 68598333 68598333 C A ZFP90 Missense_Mutation p.T548N 0.09 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 16 739515 739515 G A WDR24 Silent p.V42V 0.21 TCGA-AU-6004-01 16 74514293 74514293 C A GLG1 Splice_Site p.X558_splice 0.23 TCGA-AU-6004-01 16 77317935 77317935 C G ADAMTS18 Missense_Mutation p.C1195S 0.20 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 16 784288 784288 C T NARFL Missense_Mutation p.A212T 0.21 tolerated(1) benign(0.017) TCGA-AU-6004-01 16 78458778 78458778 T C WWOX Missense_Mutation p.V206A 0.18 deleterious(0.04) benign(0.038) TCGA-AU-6004-01 16 85011571 85011572 - AAAG ZDHHC7 Frame_Shift_Ins p.C230Sfs*16 0.15 TCGA-AU-6004-01 16 855758 855758 G A PRR25 Missense_Mutation p.E106K 0.26 tolerated_low_confidence(0.14) benign(0.013) TCGA-AU-6004-01 16 87678511 87678511 G A JPH3 Missense_Mutation p.V344I 0.24 tolerated(0.18) benign(0.153) TCGA-AU-6004-01 16 88503581 88503581 G A ZNF469 Missense_Mutation p.A3207T 0.27 benign(0.002) TCGA-AU-6004-01 16 88788254 88788254 T C PIEZO1 Missense_Mutation p.S1726G 0.19 deleterious(0) possibly_damaging(0.872) TCGA-AU-6004-01 16 88798760 88798762 AGA - PIEZO1 In_Frame_Del p.F991del 0.32 TCGA-AU-6004-01 16 8889914 8889914 C T TMEM186 Silent p.Q179Q 0.23 TCGA-AU-6004-01 16 88943567 88943567 G T CBFA2T3 Silent p.G593G 0.31 TCGA-AU-6004-01 17 10443308 10443308 A G MYH2 Missense_Mutation p.Y362H 0.24 tolerated(0.2) benign(0.19) TCGA-AU-6004-01 17 11659959 11659959 G A DNAH9 Silent p.L2271L 0.26 TCGA-AU-6004-01 17 12642606 12642606 C - MYOCD Frame_Shift_Del p.S229Afs*4 0.27 TCGA-AU-6004-01 17 15906128 15906128 C T TTC19 Missense_Mutation p.R149W 0.10 deleterious(0) possibly_damaging(0.895) TCGA-AU-6004-01 17 16335552 16335552 G A TRPV2 Missense_Mutation p.A643T 0.20 deleterious(0) probably_damaging(0.951) TCGA-AU-6004-01 17 16365572 16365572 C T FAM211A Silent p.P125P 0.27 TCGA-AU-6004-01 17 16703567 16703567 G T CCDC144A 3'UTR 0.15 TCGA-AU-6004-01 17 18145296 18145296 C T LLGL1 Silent p.R955R 0.21 TCGA-AU-6004-01 17 18769161 18769161 G A PRPSAP2 Silent p.T5T 0.06 TCGA-AU-6004-01 17 19290353 19290353 C T MFAP4 Splice_Site p.X26_splice 0.25 TCGA-AU-6004-01 17 19318645 19318645 C T RNF112 Missense_Mutation p.P448L 0.29 deleterious(0.01) benign(0.306) TCGA-AU-6004-01 17 19643732 19643732 C T ALDH3A1 Missense_Mutation p.R289Q 0.18 tolerated(0.09) benign(0.006) TCGA-AU-6004-01 17 19689396 19689396 G A ULK2 Missense_Mutation p.P702L 0.36 deleterious(0.04) probably_damaging(0.987) TCGA-AU-6004-01 17 21318754 21318754 G A KCNJ12 Missense_Mutation p.G34S 0.07 tolerated(0.12) benign(0.408) TCGA-AU-6004-01 17 21454365 21454365 T G C17orf51 Silent p.P107P 0.24 TCGA-AU-6004-01 17 21731087 21731087 G A UBBP4 Missense_Mutation p.R130H 0.21 tolerated(0.09) possibly_damaging(0.766) TCGA-AU-6004-01 17 26818763 26818763 C T SLC13A2 Silent p.N306N 0.11 TCGA-AU-6004-01 17 27938978 27938978 A G ANKRD13B Missense_Mutation p.N352D 0.23 tolerated(0.52) benign(0.124) TCGA-AU-6004-01 17 2966546 2966546 G A OR1D5 Missense_Mutation p.A119V 0.09 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 17 3372656 3372656 C T SPATA22 5'UTR 0.16 TCGA-AU-6004-01 17 35743037 35743039 AAG - C17orf78 In_Frame_Del p.E162del 0.19 TCGA-AU-6004-01 17 36353729 36353730 - A RP11-1407O15.2 Frame_Shift_Ins p.A378Cfs*5 0.08 TCGA-AU-6004-01 17 36358160 36358160 T C RP11-1407O15.2 Splice_Site p.X316_splice 0.12 TCGA-AU-6004-01 17 36719560 36719560 G A SRCIN1 Missense_Mutation p.R247W 0.26 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 17 37829821 37829821 G A PGAP3 Silent p.L214L 0.28 TCGA-AU-6004-01 17 38520199 38520199 C T CTD-2267D19.3 3'UTR 0.15 TCGA-AU-6004-01 17 38612798 38612798 T G IGFBP4 Missense_Mutation p.L247R 0.27 tolerated(0.05) probably_damaging(0.988) TCGA-AU-6004-01 17 39092743 39092743 G A KRT23 Missense_Mutation p.A38V 0.10 tolerated(0.13) possibly_damaging(0.719) TCGA-AU-6004-01 17 3913049 3913049 T C ZZEF1 Missense_Mutation p.D2861G 0.21 tolerated(0.23) benign(0.059) TCGA-AU-6004-01 17 39564815 39564815 T - AC003958.2 RNA 0.29 TCGA-AU-6004-01 17 39779211 39779211 A G KRT17 Missense_Mutation p.F169S 0.23 deleterious(0.02) benign(0.438) TCGA-AU-6004-01 17 39994380 39994380 T C KLHL10 Splice_Site p.X65_splice 0.25 TCGA-AU-6004-01 17 40318419 40318419 G T KCNH4 Missense_Mutation p.P579Q 0.19 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 17 40362446 40362447 - T STAT5B Frame_Shift_Ins p.H584Tfs*8 0.32 TCGA-AU-6004-01 17 40453399 40453399 C - STAT5A Frame_Shift_Del p.Q368Rfs*2 0.22 TCGA-AU-6004-01 17 4098291 4098291 C T ANKFY1 Missense_Mutation p.A494T 0.18 tolerated(0.1) probably_damaging(0.946) TCGA-AU-6004-01 17 41003247 41003247 G A AOC3 5'UTR 0.16 TCGA-AU-6004-01 17 41478005 41478005 A - ARL4D 3'UTR 0.24 TCGA-AU-6004-01 17 43101858 43101858 G A DCAKD Silent p.L213L 0.24 TCGA-AU-6004-01 17 43318493 43318493 C T FMNL1 Intron 0.29 TCGA-AU-6004-01 17 43515270 43515270 C T PLEKHM1 Missense_Mutation p.R1042H 0.25 deleterious(0) probably_damaging(0.971) TCGA-AU-6004-01 17 44101592 44101592 A - MAPT 3'UTR 0.46 TCGA-AU-6004-01 17 4448451 4448451 T C MYBBP1A Missense_Mutation p.E727G 0.19 tolerated(0.11) benign(0.017) TCGA-AU-6004-01 17 44851032 44851032 A G WNT3 Splice_Site p.X108_splice 0.18 TCGA-AU-6004-01 17 45473246 45473246 G A EFCAB13 Silent p.T616T 0.24 TCGA-AU-6004-01 17 45755780 45755780 G A KPNB1 Splice_Site p.X785_splice 0.24 TCGA-AU-6004-01 17 4725966 4725966 G A PLD2 Missense_Mutation p.R870H 0.22 tolerated(0.38) benign(0.001) TCGA-AU-6004-01 17 48267237 48267237 C T COL1A1 Missense_Mutation p.G866S 0.25 unknown(0) TCGA-AU-6004-01 17 4875738 4875738 G - CAMTA2 Frame_Shift_Del p.P889Lfs*9 0.48 TCGA-AU-6004-01 17 5073869 5073869 G - USP6 Frame_Shift_Del p.R1206Gfs*38 0.10 TCGA-AU-6004-01 17 5384705 5384705 G A DERL2 Missense_Mutation p.R80C 0.27 deleterious(0.03) possibly_damaging(0.896) TCGA-AU-6004-01 17 54969327 54969327 C T TRIM25 Missense_Mutation p.G543S 0.23 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.32 TCGA-AU-6004-01 17 56682489 56682489 C T TEX14 Missense_Mutation p.E402K 0.23 tolerated(1) benign(0.001) TCGA-AU-6004-01 17 58149577 58149577 A G HEATR6 Missense_Mutation p.M233T 0.07 tolerated(0.16) benign(0.422) TCGA-AU-6004-01 17 59490614 59490614 G A C17orf82 3'UTR 0.23 TCGA-AU-6004-01 17 60744869 60744869 C T MRC2 Silent p.N364N 0.09 TCGA-AU-6004-01 17 61492979 61492979 C T TANC2 Missense_Mutation p.R1287W 0.13 deleterious(0) probably_damaging(0.948) TCGA-AU-6004-01 17 61910491 61910491 G A SMARCD2 Nonsense_Mutation p.R494* 0.29 TCGA-AU-6004-01 17 62006828 62006828 C A CD79B Missense_Mutation p.S187I 0.26 deleterious(0.02) possibly_damaging(0.812) TCGA-AU-6004-01 17 62532833 62532833 A G CEP95 Silent p.E728E 0.21 TCGA-AU-6004-01 17 71189283 71189283 T C COG1 Silent p.H25H 0.25 TCGA-AU-6004-01 17 7139520 7139520 G - PHF23 Frame_Shift_Del p.S243Vfs*24 0.20 TCGA-AU-6004-01 17 7187920 7187920 C T SLC2A4 Missense_Mutation p.R282C 0.25 deleterious(0) possibly_damaging(0.629) TCGA-AU-6004-01 17 7258080 7258081 AG - KCTD11 3'UTR 0.24 TCGA-AU-6004-01 17 72929602 72929602 G T OTOP2 Missense_Mutation p.A551S 0.23 tolerated(1) benign(0.298) TCGA-AU-6004-01 17 73559535 73559535 G A LLGL2 Missense_Mutation p.V273M 0.23 tolerated(0.1) benign(0.041) TCGA-AU-6004-01 17 73738745 73738745 C T ITGB4 Silent p.D955D 0.25 TCGA-AU-6004-01 17 74037023 74037023 G A SRP68 Missense_Mutation p.R521W 0.25 deleterious(0.04) benign(0.014) TCGA-AU-6004-01 17 74042253 74042253 A G SRP68 Missense_Mutation p.S389P 0.16 tolerated(0.05) possibly_damaging(0.786) TCGA-AU-6004-01 17 74079721 74079721 C T EXOC7 3'UTR 0.22 TCGA-AU-6004-01 17 7415279 7415279 C T POLR2A Silent p.H1417H 0.19 TCGA-AU-6004-01 17 74300973 74300973 T G QRICH2 Missense_Mutation p.E29A 0.22 deleterious(0.01) benign(0.27) TCGA-AU-6004-01 17 74388089 74388089 G - UBE2O Frame_Shift_Del p.H1018Tfs*12 0.26 TCGA-AU-6004-01 17 76047174 76047174 T A TNRC6C Missense_Mutation p.S677R 0.17 tolerated(0.29) possibly_damaging(0.628) TCGA-AU-6004-01 17 76113953 76113953 C T TMC6 Missense_Mutation p.V651I 0.21 tolerated(0.43) benign(0.049) TCGA-AU-6004-01 17 7736504 7736504 T C DNAH2 Missense_Mutation p.F4365S 0.24 probably_damaging(1) TCGA-AU-6004-01 17 78061871 78061871 C T CCDC40 Missense_Mutation p.A894V 0.24 tolerated(0.15) benign(0.01) TCGA-AU-6004-01 17 78081391 78081391 A G GAA Missense_Mutation p.D243G 0.21 deleterious(0.02) possibly_damaging(0.701) TCGA-AU-6004-01 17 78169048 78169048 G A CARD14 Missense_Mutation p.R472H 0.24 deleterious(0.04) benign(0.048) TCGA-AU-6004-01 17 78857732 78857732 A G RPTOR Missense_Mutation p.H601R 0.22 deleterious(0.01) probably_damaging(0.926) TCGA-AU-6004-01 17 78968875 78968875 C T CHMP6 Missense_Mutation p.T77M 0.05 deleterious(0.02) probably_damaging(0.973) TCGA-AU-6004-01 17 79571667 79571667 C T NPLOC4 Silent p.Q247Q 0.21 TCGA-AU-6004-01 17 79686909 79686909 T - SLC25A10 Frame_Shift_Del p.Y262Tfs*87 0.21 TCGA-AU-6004-01 17 80050341 80050341 G A FASN Missense_Mutation p.A340V 0.19 deleterious(0) probably_damaging(0.947) TCGA-AU-6004-01 17 80373374 80373374 G A OGFOD3 Silent p.D68D 0.08 TCGA-AU-6004-01 17 80885172 80885172 C T TBCD Missense_Mutation p.T861M 0.19 tolerated(0.1) benign(0.085) TCGA-AU-6004-01 17 8108651 8108651 G T AURKB Silent p.R248R 0.23 TCGA-AU-6004-01 18 11885766 11885766 C T MPPE1 Missense_Mutation p.S306N 0.21 tolerated(0.49) benign(0.168) TCGA-AU-6004-01 18 14542854 14542854 T C POTEC Missense_Mutation p.M98V 0.19 tolerated_low_confidence(0.06) benign(0.019) TCGA-AU-6004-01 18 196734 196734 C T USP14 Silent p.A187A 0.19 TCGA-AU-6004-01 18 21084344 21084344 G A C18orf8 Missense_Mutation p.V38I 0.29 tolerated(0.1) benign(0.134) TCGA-AU-6004-01 18 21119857 21119857 G A NPC1 Nonsense_Mutation p.Q905* 0.18 TCGA-AU-6004-01 18 28934936 28934936 T C DSG1 Missense_Mutation p.V926A 0.20 deleterious(0) possibly_damaging(0.64) TCGA-AU-6004-01 18 29617140 29617140 C T RNF125 Missense_Mutation p.R76W 0.24 deleterious(0.05) benign(0.298) TCGA-AU-6004-01 18 32455208 32455208 G - DTNA Frame_Shift_Del p.A498Qfs*40 0.25 TCGA-AU-6004-01 18 32558361 32558361 C T MAPRE2 5'UTR 0.18 TCGA-AU-6004-01 18 32888087 32888090 AAAC - ZNF271 RNA 0.19 TCGA-AU-6004-01 18 33840056 33840056 G A MOCOS Missense_Mutation p.R776H 0.16 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 18 34850793 34850793 G - CELF4 Frame_Shift_Del p.P346Hfs*54 0.20 TCGA-AU-6004-01 18 39542579 39542579 C T PIK3C3 Missense_Mutation p.S128L 0.13 deleterious(0.03) possibly_damaging(0.804) TCGA-AU-6004-01 18 44555263 44555263 G A TCEB3C Silent p.N317N 0.03 TCGA-AU-6004-01 18 45567002 45567003 - TCC ZBTB7C In_Frame_Ins p.E162dup 0.18 TCGA-AU-6004-01 18 47095873 47095873 G A LIPG Missense_Mutation p.G176R 0.23 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 18 48333092 48333092 G T MRO Silent p.A90A 0.28 TCGA-AU-6004-01 18 55998097 55998097 G T NEDD4L Missense_Mutation p.R314M 0.06 deleterious(0.01) probably_damaging(0.928) TCGA-AU-6004-01 18 56002735 56002735 G A NEDD4L Missense_Mutation p.R364H 0.29 tolerated(0.05) possibly_damaging(0.628) TCGA-AU-6004-01 18 59221775 59221775 G - CDH20 Frame_Shift_Del p.D753Tfs*8 0.21 TCGA-AU-6004-01 18 60646022 60646022 C T PHLPP1 Silent p.S1504S 0.25 TCGA-AU-6004-01 18 670771 670771 G A TYMS Silent p.L212L 0.25 TCGA-AU-6004-01 18 7011991 7011991 T C LAMA1 Intron 0.23 TCGA-AU-6004-01 18 70534595 70534595 C T NETO1 5'UTR 0.20 TCGA-AU-6004-01 18 72997584 72997584 C T TSHZ1 Silent p.Y29Y 0.30 TCGA-AU-6004-01 18 7888258 7888258 C T PTPRM Silent p.Y117Y 0.05 TCGA-AU-6004-01 18 9256206 9256207 - A ANKRD12 Frame_Shift_Ins p.S984Ifs*7 0.17 TCGA-AU-6004-01 19 10116299 10116299 G A COL5A3 Missense_Mutation p.R177C 0.20 unknown(0) TCGA-AU-6004-01 19 10203390 10203390 C T ANGPTL6 Missense_Mutation p.G430S 0.26 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 19 10225727 10225727 G A P2RY11 3'UTR 0.26 TCGA-AU-6004-01 19 10283799 10283799 C T DNMT1 Silent p.T245T 0.17 TCGA-AU-6004-01 19 10556978 10556978 C T PDE4A Silent p.A135A 0.27 TCGA-AU-6004-01 19 10799955 10799955 C T ILF3 Silent p.N888N 0.27 TCGA-AU-6004-01 19 11038556 11038556 T C YIPF2 Silent p.Q37Q 0.27 TCGA-AU-6004-01 19 110942 110942 G T OR4F17 Missense_Mutation p.K88N 0.14 tolerated(0.32) benign(0.258) TCGA-AU-6004-01 19 11144502 11144502 A G SMARCA4 Silent p.P1278P 0.20 TCGA-AU-6004-01 19 11289357 11289357 G - KANK2 Frame_Shift_Del p.P430Rfs*5 0.20 TCGA-AU-6004-01 19 11353972 11353972 G A DOCK6 Missense_Mutation p.R450C 0.28 deleterious(0) possibly_damaging(0.899) TCGA-AU-6004-01 19 11453691 11453691 G A TMEM205 Nonsense_Mutation p.R124* 0.23 TCGA-AU-6004-01 19 12502590 12542364 19:12502590-12542364 - ZNF799 large deletion 0.20 TCGA-AU-6004-01 19 12995783 12995783 C - KLF1 Frame_Shift_Del p.Q336Sfs*23 0.31 TCGA-AU-6004-01 19 13041109 13041109 C T FARSA Missense_Mutation p.R144Q 0.26 tolerated(1) benign(0) TCGA-AU-6004-01 19 14262140 14262140 C T LPHN1 Missense_Mutation p.G1324R 0.36 tolerated(0.68) possibly_damaging(0.548) TCGA-AU-6004-01 19 1430253 1430254 - C DAZAP1 Frame_Shift_Ins p.P258Afs*169 0.16 TCGA-AU-6004-01 19 16497040 16497040 G A EPS15L1 Silent p.L702L 0.11 TCGA-AU-6004-01 19 16860457 16860457 C - NWD1 Frame_Shift_Del p.L337Wfs*14 0.20 TCGA-AU-6004-01 19 17004013 17004013 G A CPAMD8 Missense_Mutation p.P1902L 0.21 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-AU-6004-01 19 17955111 17955112 - G JAK3 Frame_Shift_Ins p.Q39Pfs*13 0.21 TCGA-AU-6004-01 19 17983208 17983208 C T SLC5A5 Missense_Mutation p.S27F 0.23 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 19 18092830 18092830 C T KCNN1 Missense_Mutation p.R271C 0.30 deleterious(0) probably_damaging(0.943) TCGA-AU-6004-01 19 18241434 18241434 G A MAST3 Missense_Mutation p.E423K 0.05 deleterious(0) possibly_damaging(0.675) TCGA-AU-6004-01 19 18572547 18572547 G A ELL Silent p.A195A 0.29 TCGA-AU-6004-01 19 19038785 19038785 G A DDX49 Silent p.A401A 0.29 TCGA-AU-6004-01 19 19105954 19105954 C T SUGP2 Missense_Mutation p.V1043M 0.08 tolerated(0.08) benign(0.184) TCGA-AU-6004-01 19 19758308 19758308 G A ATP13A1 Silent p.L941L 0.12 TCGA-AU-6004-01 19 2037756 2037756 G A MKNK2 3'UTR 0.06 TCGA-AU-6004-01 19 20808338 20808338 T - ZNF626 Frame_Shift_Del p.G116Dfs*3 0.17 TCGA-AU-6004-01 19 21933816 21933816 G A ZNF100 Intron 0.21 TCGA-AU-6004-01 19 22786043 22786043 C A AC011467.1 3'Flank 0.19 TCGA-AU-6004-01 19 23299847 23299847 C T ZNF730 5'UTR 0.25 TCGA-AU-6004-01 19 282298 282298 C T PPAP2C Missense_Mutation p.A206T 0.19 deleterious(0.02) benign(0.17) TCGA-AU-6004-01 19 2827728 2827728 C T ZNF554 Silent p.N80N 0.23 TCGA-AU-6004-01 19 288029 288029 G A PPAP2C Silent p.T86T 0.07 TCGA-AU-6004-01 19 30936106 30936106 G A ZNF536 Missense_Mutation p.R546H 0.23 tolerated(0.53) probably_damaging(0.996) TCGA-AU-6004-01 19 3114955 3114955 G A GNA11 Missense_Mutation p.V164I 0.24 tolerated(0.25) benign(0.004) TCGA-AU-6004-01 19 31767665 31767665 C T TSHZ3 Missense_Mutation p.E1012K 0.25 tolerated(0.23) benign(0.013) TCGA-AU-6004-01 19 33703794 33703794 G - SLC7A10 Frame_Shift_Del p.T158Pfs*12 0.20 TCGA-AU-6004-01 19 33870846 33870846 A - CEBPG 3'UTR 0.19 TCGA-AU-6004-01 19 33870871 33870871 A T CEBPG 3'UTR 0.22 TCGA-AU-6004-01 19 36580182 36580182 C T WDR62 Silent p.A644A 0.21 TCGA-AU-6004-01 19 36592920 36592920 C T WDR62 Silent p.C1029C 0.20 TCGA-AU-6004-01 19 37134762 37134762 T C ZNF461 Missense_Mutation p.T79A 0.25 tolerated(0.45) benign(0.217) TCGA-AU-6004-01 19 37975432 37975432 A G ZNF570 Missense_Mutation p.E303G 0.19 tolerated(0.06) benign(0.04) TCGA-AU-6004-01 19 3807201 3807201 T C ZFR2 Missense_Mutation p.Q871R 0.21 deleterious(0) probably_damaging(0.99) TCGA-AU-6004-01 19 38974017 38974017 C T RYR1 Silent p.L1599L 0.22 TCGA-AU-6004-01 19 39760171 39760171 C T IFNL2 Missense_Mutation p.T105M 0.27 deleterious(0.01) probably_damaging(0.935) TCGA-AU-6004-01 19 39805374 39805374 G A LRFN1 Silent p.I201I 0.23 TCGA-AU-6004-01 19 40364356 40364356 G A FCGBP Silent p.P4762P 0.20 TCGA-AU-6004-01 19 40389762 40389762 C T FCGBP Missense_Mutation p.R2807Q 0.08 benign(0.058) TCGA-AU-6004-01 19 40903906 40903906 G A PRX Intron 0.17 TCGA-AU-6004-01 19 41239213 41239213 T C ITPKC Missense_Mutation p.W540R 0.24 deleterious(0.02) possibly_damaging(0.832) TCGA-AU-6004-01 19 41355759 41355759 C T CYP2A6 Missense_Mutation p.E103K 0.20 benign(0.018) TCGA-AU-6004-01 19 41749573 41749573 G A AXL Missense_Mutation p.V500M 0.16 deleterious(0) possibly_damaging(0.613) TCGA-AU-6004-01 19 42406959 42406959 G A ARHGEF1 Missense_Mutation p.R565H 0.31 deleterious(0) possibly_damaging(0.848) TCGA-AU-6004-01 19 42510877 42510877 C A GRIK5 Nonsense_Mutation p.E653* 0.15 TCGA-AU-6004-01 19 42853851 42853851 C A MEGF8 Missense_Mutation p.S766R 0.18 deleterious(0.04) benign(0.166) TCGA-AU-6004-01 19 43698664 43698664 C T PSG4 Silent p.E357E 0.12 TCGA-AU-6004-01 19 43698667 43698667 G C PSG4 Silent p.A356A 0.11 TCGA-AU-6004-01 19 44096083 44096083 G A IRGQ 3'UTR 0.23 TCGA-AU-6004-01 19 44470960 44470960 C T ZNF221 Nonsense_Mutation p.R436* 0.31 TCGA-AU-6004-01 19 45285675 45285675 C T CBLC Missense_Mutation p.P236S 0.23 deleterious(0.02) probably_damaging(1) TCGA-AU-6004-01 19 4688832 4688832 C T DPP9 Missense_Mutation p.G608S 0.29 tolerated(0.56) benign(0.086) TCGA-AU-6004-01 19 4714215 4714215 C T DPP9 Missense_Mutation p.R64Q 0.33 tolerated(0.07) probably_damaging(0.998) TCGA-AU-6004-01 19 47492845 47492845 G A ARHGAP35 Missense_Mutation p.V1317M 0.22 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 19 47575882 47575882 G A ZC3H4 Missense_Mutation p.P510L 0.22 unknown(0) TCGA-AU-6004-01 19 47593318 47593318 G C ZC3H4 Missense_Mutation p.D207E 0.03 benign(0.218) TCGA-AU-6004-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.17 TCGA-AU-6004-01 19 48018113 48018115 AGA - NAPA In_Frame_Del p.F28del 0.22 TCGA-AU-6004-01 19 4817790 4817790 A G TICAM1 Silent p.P200P 0.22 TCGA-AU-6004-01 19 48284382 48284382 C A SEPW1 Silent p.P42P 0.15 TCGA-AU-6004-01 19 48339517 48339517 C T CRX Missense_Mutation p.R40W 0.22 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 19 4844708 4844708 C T PLIN3 Missense_Mutation p.G311D 0.25 tolerated(0.36) benign(0.05) TCGA-AU-6004-01 19 49253812 49253812 G A FUT1 Missense_Mutation p.R243W 0.21 deleterious(0.03) possibly_damaging(0.901) TCGA-AU-6004-01 19 49646241 49646242 - C PPFIA3 Frame_Shift_Ins p.A911Rfs*78 0.18 TCGA-AU-6004-01 19 49657098 49657098 G - HRC Frame_Shift_Del p.P466Qfs*12 0.23 TCGA-AU-6004-01 19 50105136 50105136 C T PRR12 Silent p.D1578D 0.24 TCGA-AU-6004-01 19 50926165 50926165 C - SPIB Frame_Shift_Del p.Q72Rfs*108 0.27 TCGA-AU-6004-01 19 51009410 51009410 G A JOSD2 3'UTR 0.21 TCGA-AU-6004-01 19 51140578 51140578 C T SYT3 Missense_Mutation p.D31N 0.22 deleterious(0.03) benign(0.007) TCGA-AU-6004-01 19 51363480 51363480 G T KLK3 3'UTR 0.12 TCGA-AU-6004-01 19 5144088 5144088 C T KDM4B Silent p.G887G 0.29 TCGA-AU-6004-01 19 51563108 51563108 C T KLK13 Missense_Mutation p.G161D 0.20 deleterious(0) probably_damaging(0.997) TCGA-AU-6004-01 19 51857931 51857931 C T ETFB 5'UTR 0.22 TCGA-AU-6004-01 19 51870355 51870355 A - CLDND2 3'UTR 0.24 TCGA-AU-6004-01 19 52538026 52538026 A T ZNF432 Silent p.R302R 0.24 TCGA-AU-6004-01 19 53473535 53473536 - T ZNF702P RNA 0.13 TCGA-AU-6004-01 19 53855546 53855546 C T ZNF845 Missense_Mutation p.R540C 0.25 tolerated(0.08) benign(0.009) TCGA-AU-6004-01 19 54191792 54191792 G A MIR1283-1 RNA 0.24 TCGA-AU-6004-01 19 54378838 54378838 T C MYADM 3'UTR 0.16 TCGA-AU-6004-01 19 54660546 54660546 C T LENG1 Missense_Mutation p.R177H 0.22 tolerated(0.22) benign(0) TCGA-AU-6004-01 19 55143599 55143599 G A LILRB1 Missense_Mutation p.R191H 0.19 tolerated(1) benign(0) TCGA-AU-6004-01 19 55494934 55494934 C T NLRP2 Missense_Mutation p.A623V 0.23 tolerated(0.09) benign(0.073) TCGA-AU-6004-01 19 55739998 55739998 G A AC010327.2 3'UTR 0.25 TCGA-AU-6004-01 19 55823418 55823418 C T BRSK1 Silent p.N773N 0.31 TCGA-AU-6004-01 19 55857661 55857661 C T SUV420H2 Silent p.Y217Y 0.17 TCGA-AU-6004-01 19 56206537 56206537 G A EPN1 Missense_Mutation p.V602I 0.20 tolerated(0.32) benign(0.087) TCGA-AU-6004-01 19 56274429 56274429 G A RFPL4A Missense_Mutation p.R251H 0.12 tolerated(0.09) probably_damaging(0.921) TCGA-AU-6004-01 19 56539070 56539070 G A NLRP5 Missense_Mutation p.V491I 0.22 tolerated(0.43) benign(0) TCGA-AU-6004-01 19 56539246 56539246 C T NLRP5 Silent p.D549D 0.23 TCGA-AU-6004-01 19 57065936 57065936 C A ZFP28 Nonsense_Mutation p.C594* 0.25 TCGA-AU-6004-01 19 57646264 57646264 T - ZIM3 3'UTR 0.19 TCGA-AU-6004-01 19 57889023 57889023 C T ZNF547 Missense_Mutation p.L227F 0.19 tolerated(0.1) probably_damaging(0.957) TCGA-AU-6004-01 19 579609 579609 C T BSG Silent p.G175G 0.19 TCGA-AU-6004-01 19 58238872 58238872 C T ZNF671 Missense_Mutation p.A9T 0.21 tolerated_low_confidence(0.06) benign(0.005) TCGA-AU-6004-01 19 58384972 58384972 G A ZNF814 Missense_Mutation p.R596C 0.27 deleterious(0) probably_damaging(0.917) TCGA-AU-6004-01 19 58639602 58639602 G A ZNF329 Silent p.G423G 0.21 TCGA-AU-6004-01 19 58797099 58797099 G A ZNF8 Missense_Mutation p.R28Q 0.28 tolerated(0.09) benign(0.018) TCGA-AU-6004-01 19 6417826 6417826 G A KHSRP Silent p.G335G 0.27 TCGA-AU-6004-01 19 652265 652265 C A RNF126 Missense_Mutation p.A56S 0.23 tolerated(0.94) benign(0.058) TCGA-AU-6004-01 19 6751321 6751321 G A TRIP10 3'UTR 0.23 TCGA-AU-6004-01 19 7142853 7142853 T C INSR Missense_Mutation p.Y839C 0.18 deleterious(0) probably_damaging(0.957) TCGA-AU-6004-01 19 7712336 7712337 AG - STXBP2 Frame_Shift_Del p.E546Dfs*33 0.25 TCGA-AU-6004-01 19 8056641 8056641 G A ELAVL1 Missense_Mutation p.T20M 0.24 deleterious(0.01) benign(0.314) TCGA-AU-6004-01 19 8181604 8181604 C - FBN3 Frame_Shift_Del p.C1223Afs*11 0.22 TCGA-AU-6004-01 19 8191671 8191671 C T FBN3 Missense_Mutation p.R781Q 0.24 tolerated(0.38) benign(0.047) TCGA-AU-6004-01 19 8656732 8656733 - C ADAMTS10 Frame_Shift_Ins p.K584Qfs*6 0.20 TCGA-AU-6004-01 19 885913 885913 C T MED16 Missense_Mutation p.V246M 0.25 deleterious(0) possibly_damaging(0.867) TCGA-AU-6004-01 19 9089593 9089593 C T MUC16 Missense_Mutation p.S741N 0.21 unknown(0) TCGA-AU-6004-01 1 100155164 100155166 GAG - PALMD In_Frame_Del p.E453del 0.12 TCGA-AU-6004-01 1 100346326 100346326 C T AGL Missense_Mutation p.T625M 0.26 deleterious(0) probably_damaging(0.996) TCGA-AU-6004-01 1 101006057 101006057 C T GPR88 3'UTR 0.24 TCGA-AU-6004-01 1 102462415 102462415 G A OLFM3 5'UTR 0.25 TCGA-AU-6004-01 1 10532402 10532402 G A DFFA Silent p.C38C 0.29 TCGA-AU-6004-01 1 10705133 10705133 G A CASZ1 Nonsense_Mutation p.R1237* 0.30 TCGA-AU-6004-01 1 109242062 109242062 G A PRPF38B Missense_Mutation p.R354Q 0.10 deleterious(0.02) unknown(0) TCGA-AU-6004-01 1 109816179 109816179 C - CELSR2 Frame_Shift_Del p.P2879Lfs*14 0.25 TCGA-AU-6004-01 1 110022175 110022175 C - SYPL2 3'UTR 0.16 TCGA-AU-6004-01 1 110031485 110031485 A C ATXN7L2 Missense_Mutation p.Q267P 0.25 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 1 110168276 110168276 C - AMPD2 Intron 0.26 TCGA-AU-6004-01 1 110738345 110738345 G A SLC6A17 Missense_Mutation p.A544T 0.23 tolerated(0.06) benign(0.025) TCGA-AU-6004-01 1 11217239 11217239 C T MTOR Missense_Mutation p.R1480H 0.27 tolerated(0.13) possibly_damaging(0.862) TCGA-AU-6004-01 1 1132066 1132066 C A TTLL10 Silent p.G496G 0.21 TCGA-AU-6004-01 1 115110623 115110625 CTT - BCAS2 3'UTR 0.18 TCGA-AU-6004-01 1 118548087 118548087 T C SPAG17 Missense_Mutation p.T1576A 0.06 deleterious(0) probably_damaging(0.991) TCGA-AU-6004-01 1 120302555 120302555 C T HMGCS2 Missense_Mutation p.R206H 0.26 deleterious(0.03) benign(0.251) TCGA-AU-6004-01 1 12030757 12030757 G A PLOD1 Missense_Mutation p.V596M 0.20 deleterious(0) probably_damaging(0.918) TCGA-AU-6004-01 1 1233773 1233773 G A ACAP3 Silent p.L298L 0.22 TCGA-AU-6004-01 1 147092680 147092681 - C BCL9 Frame_Shift_Ins p.V910Cfs*42 0.24 TCGA-AU-6004-01 1 150801574 150801574 G A ARNT Missense_Mutation p.P388S 0.15 deleterious(0.03) possibly_damaging(0.739) TCGA-AU-6004-01 1 151115060 151115060 A C SEMA6C Missense_Mutation p.L13R 0.19 deleterious(0.01) possibly_damaging(0.883) TCGA-AU-6004-01 1 152325757 152325757 C A FLG2 Missense_Mutation p.S1502I 0.17 possibly_damaging(0.618) TCGA-AU-6004-01 1 153330776 153330776 C T S100A9 Missense_Mutation p.S6L 0.31 deleterious(0) probably_damaging(0.921) TCGA-AU-6004-01 1 154313510 154313510 C T ATP8B2 Silent p.N438N 0.26 TCGA-AU-6004-01 1 155186344 155186344 G A MTX1 3'Flank 0.25 TCGA-AU-6004-01 1 155224236 155224236 G A FAM189B Silent p.S79S 0.17 TCGA-AU-6004-01 1 155448996 155448996 T - ASH1L Frame_Shift_Del p.K1222Rfs*11 0.17 TCGA-AU-6004-01 1 156823774 156823774 C T INSRR Missense_Mutation p.R136H 0.23 deleterious(0.02) benign(0.012) TCGA-AU-6004-01 1 157765858 157765858 T C FCRL1 3'UTR 0.24 TCGA-AU-6004-01 1 157767978 157767978 C A FCRL1 Missense_Mutation p.G363W 0.25 deleterious(0.02) possibly_damaging(0.571) TCGA-AU-6004-01 1 158301256 158301256 G A CD1B 5'UTR 0.16 TCGA-AU-6004-01 1 158585170 158585170 C T SPTA1 Silent p.A2208A 0.24 TCGA-AU-6004-01 1 159170683 159170683 G T CADM3 Missense_Mutation p.G424W 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-AU-6004-01 1 159174723 159174723 G A DARC 5'Flank 0.25 TCGA-AU-6004-01 1 160264296 160264298 TCT - COPA In_Frame_Del p.E893del 0.25 TCGA-AU-6004-01 1 160394929 160394929 G A VANGL2 Missense_Mutation p.A443T 0.19 tolerated(0.73) benign(0.005) TCGA-AU-6004-01 1 161183758 161183758 G A NDUFS2 Intron 0.31 TCGA-AU-6004-01 1 161199322 161199322 G A TOMM40L 3'UTR 0.15 TCGA-AU-6004-01 1 162549290 162549290 A - UAP1 Frame_Shift_Del p.E189Rfs*3 0.22 TCGA-AU-6004-01 1 16375456 16375456 G A CLCNKB Intron 0.12 TCGA-AU-6004-01 1 167654702 167654702 C - RCSD1 Frame_Shift_Del p.L53Cfs*6 0.24 TCGA-AU-6004-01 1 167814891 167814891 T C ADCY10 Missense_Mutation p.I973V 0.09 tolerated(0.53) benign(0.032) TCGA-AU-6004-01 1 16902783 16902783 G A NBPF1 Missense_Mutation p.L700F 0.04 deleterious(0.04) possibly_damaging(0.881) TCGA-AU-6004-01 1 170004605 170004605 A - KIFAP3 Frame_Shift_Del p.C203Vfs*22 0.18 TCGA-AU-6004-01 1 170024446 170024447 - T KIFAP3 Frame_Shift_Ins p.I55Nfs*5 0.19 TCGA-AU-6004-01 1 174983735 174983735 A - MRPS14 3'UTR 0.26 TCGA-AU-6004-01 1 175066800 175066800 T C TNN Silent p.A612A 0.19 TCGA-AU-6004-01 1 178820135 178820135 G A ANGPTL1 3'UTR 0.16 TCGA-AU-6004-01 1 17939586 17939586 T G ARHGEF10L Missense_Mutation p.Y215D 0.11 tolerated(0.07) benign(0.421) TCGA-AU-6004-01 1 180913490 180913490 T C KIAA1614 Intron 0.17 TCGA-AU-6004-01 1 181702820 181702820 G A CACNA1E Missense_Mutation p.E1066K 0.11 tolerated(0.81) benign(0.002) TCGA-AU-6004-01 1 182026619 182026619 G A ZNF648 Missense_Mutation p.A176V 0.20 tolerated(0.26) benign(0.005) TCGA-AU-6004-01 1 185703895 185703895 G - HMCN1 5'UTR 0.19 TCGA-AU-6004-01 1 190250792 190250792 G A BRINP3 Missense_Mutation p.R109C 0.23 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 1 19411107 19411107 G A UBR4 Missense_Mutation p.R4967C 0.05 probably_damaging(0.993) TCGA-AU-6004-01 1 197898314 197898314 G A LHX9 Silent p.V373V 0.27 TCGA-AU-6004-01 1 200378460 200378460 A C ZNF281 Missense_Mutation p.V125G 0.22 deleterious_low_confidence(0) benign(0.444) TCGA-AU-6004-01 1 200818152 200818152 A G CAMSAP2 Missense_Mutation p.H752R 0.22 deleterious(0) benign(0.06) TCGA-AU-6004-01 1 202288093 202288093 C T LGR6 Missense_Mutation p.P888S 0.23 tolerated(0.09) benign(0.01) TCGA-AU-6004-01 1 204214769 204214769 C T PLEKHA6 Missense_Mutation p.R669Q 0.25 deleterious(0) possibly_damaging(0.871) TCGA-AU-6004-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.16 TCGA-AU-6004-01 1 204380466 204380466 A - PPP1R15B Frame_Shift_Del p.F25Sfs*58 0.22 TCGA-AU-6004-01 1 204949498 204949498 C - NFASC Frame_Shift_Del p.E728Sfs*7 0.23 TCGA-AU-6004-01 1 205810969 205810969 C T PM20D1 Silent p.T338T 0.18 TCGA-AU-6004-01 1 20654434 20654434 A G VWA5B1 Missense_Mutation p.I399V 0.23 tolerated(0.66) benign(0.019) TCGA-AU-6004-01 1 207648363 207648363 C T CR2 Nonsense_Mutation p.R840* 0.10 TCGA-AU-6004-01 1 21551901 21551901 G A ECE1 Missense_Mutation p.P628S 0.10 tolerated(0.17) benign(0.12) TCGA-AU-6004-01 1 21977933 21977933 A G RAP1GAP Intron 0.14 TCGA-AU-6004-01 1 222906102 222906102 C T BROX 3'UTR 0.29 TCGA-AU-6004-01 1 223567802 223567802 G A C1orf65 Missense_Mutation p.G329S 0.27 tolerated(0.78) benign(0.1) TCGA-AU-6004-01 1 225211543 225211543 A - DNAH14 Frame_Shift_Del p.K447Rfs*12 0.21 TCGA-AU-6004-01 1 225552590 225552590 T C DNAH14 Silent p.G3935G 0.21 TCGA-AU-6004-01 1 225707058 225707058 C T ENAH Missense_Mutation p.R215H 0.23 tolerated(0.29) unknown(0) TCGA-AU-6004-01 1 226016613 226016613 C T EPHX1 Silent p.H61H 0.21 TCGA-AU-6004-01 1 226334448 226334448 G A ACBD3 Nonsense_Mutation p.R484* 0.25 TCGA-AU-6004-01 1 226923274 226923274 G T ITPKB Missense_Mutation p.P629H 0.30 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 1 228480278 228480278 C T OBSCN Missense_Mutation p.A3982V 0.24 benign(0.118) TCGA-AU-6004-01 1 22903330 22903330 C T EPHA8 Silent p.C260C 0.27 TCGA-AU-6004-01 1 22970670 22970670 G A C1QC Missense_Mutation p.G52R 0.15 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 1 230372444 230372444 C T GALNT2 Nonsense_Mutation p.R194* 0.16 TCGA-AU-6004-01 1 234041392 234041392 G A SLC35F3 Silent p.S57S 0.17 TCGA-AU-6004-01 1 23520424 23520424 C T HTR1D Missense_Mutation p.A97T 0.09 tolerated(0.18) benign(0.3) TCGA-AU-6004-01 1 237796954 237796954 A - RYR2 Frame_Shift_Del p.A2213Lfs*22 0.23 TCGA-AU-6004-01 1 240371370 240371370 C A FMN2 Silent p.P1086P 0.21 TCGA-AU-6004-01 1 247263767 247263767 C T ZNF669 Missense_Mutation p.R435H 0.19 tolerated(0.43) benign(0.002) TCGA-AU-6004-01 1 247320312 247320312 T G ZNF124 Missense_Mutation p.K142N 0.11 deleterious(0.01) benign(0.159) TCGA-AU-6004-01 1 247752483 247752483 C A OR2G2 Silent p.G274G 0.28 TCGA-AU-6004-01 1 248224804 248224804 C T OR2L3 Missense_Mutation p.A274V 0.23 deleterious(0.02) probably_damaging(0.954) TCGA-AU-6004-01 1 27338944 27338944 C T FAM46B Missense_Mutation p.R73H 0.25 deleterious(0) probably_damaging(0.938) TCGA-AU-6004-01 1 27632701 27632701 G A WDTC1 Missense_Mutation p.V620M 0.29 deleterious(0) probably_damaging(0.994) TCGA-AU-6004-01 1 27950397 27950397 G A FGR Missense_Mutation p.P11S 0.24 tolerated_low_confidence(0.32) benign(0.003) TCGA-AU-6004-01 1 27995776 27995776 G A IFI6 Missense_Mutation p.T17I 0.23 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-AU-6004-01 1 28208698 28208698 G T THEMIS2 Missense_Mutation p.R288M 0.12 deleterious(0) probably_damaging(0.946) TCGA-AU-6004-01 1 28285067 28285067 C T SMPDL3B Silent p.T362T 0.15 TCGA-AU-6004-01 1 32196524 32196524 A G BAI2 Silent p.Y1419Y 0.21 TCGA-AU-6004-01 1 32204495 32204495 G A BAI2 Missense_Mutation p.R847C 0.21 deleterious(0) probably_damaging(0.991) TCGA-AU-6004-01 1 32800476 32800476 A G MARCKSL1 Missense_Mutation p.S104P 0.28 tolerated(0.08) possibly_damaging(0.887) TCGA-AU-6004-01 1 35226850 35226850 G A GJB4 5'UTR 0.08 TCGA-AU-6004-01 1 36479315 36479315 C T AGO3 Missense_Mutation p.R412C 0.27 deleterious(0) possibly_damaging(0.889) TCGA-AU-6004-01 1 36643581 36643581 C - MAP7D1 Frame_Shift_Del p.R498Efs*77 0.23 TCGA-AU-6004-01 1 44132125 44132125 T - KDM4A Frame_Shift_Del p.F227Sfs*16 0.18 TCGA-AU-6004-01 1 45288952 45288952 G A PTCH2 Missense_Mutation p.L1074F 0.25 tolerated(0.14) possibly_damaging(0.516) TCGA-AU-6004-01 1 47157541 47157542 CA - EFCAB14 Frame_Shift_Del p.V216Gfs*2 0.20 TCGA-AU-6004-01 1 50666480 50666480 G T ELAVL4 Intron 0.27 TCGA-AU-6004-01 1 52826715 52826717 CTC - CC2D1B In_Frame_Del p.E136del 0.28 TCGA-AU-6004-01 1 53974841 53974841 G - GLIS1 Frame_Shift_Del p.L553Cfs*97 0.15 TCGA-AU-6004-01 1 57489252 57489252 C T DAB1 Missense_Mutation p.A283T 0.08 tolerated(0.75) benign(0.004) TCGA-AU-6004-01 1 6196811 6196811 G A CHD5 Missense_Mutation p.R851C 0.29 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 1 64643850 64643850 A C ROR1 Missense_Mutation p.Q709P 0.25 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 1 65124551 65124551 C T CACHD1 Missense_Mutation p.T598I 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-AU-6004-01 1 67101627 67101627 C A SGIP1 Missense_Mutation p.Q34K 0.17 tolerated_low_confidence(0.73) benign(0.042) TCGA-AU-6004-01 1 67199492 67199492 A G SGIP1 Missense_Mutation p.T654A 0.17 tolerated(0.35) benign(0.218) TCGA-AU-6004-01 1 71513239 71513239 C T PTGER3 Missense_Mutation p.G8R 0.21 deleterious_low_confidence(0.01) benign(0.332) TCGA-AU-6004-01 1 75055639 75055639 A G C1orf173 Missense_Mutation p.S618P 0.19 tolerated(0.21) benign(0.134) TCGA-AU-6004-01 1 76349392 76349392 A G MSH4 Missense_Mutation p.N665D 0.08 deleterious(0) probably_damaging(0.969) TCGA-AU-6004-01 1 7839801 7839802 - A VAMP3 3'UTR 0.14 TCGA-AU-6004-01 1 78444659 78444659 G - FUBP1 Frame_Shift_Del p.S11Lfs*43 0.28 TCGA-AU-6004-01 1 86919105 86919105 C T CLCA2 Nonsense_Mutation p.R737* 0.27 TCGA-AU-6004-01 1 90463683 90463683 G A ZNF326 Missense_Mutation p.A11T 0.08 tolerated_low_confidence(0.18) benign(0.003) TCGA-AU-6004-01 1 91977454 91977454 T - CDC7 Frame_Shift_Del p.L184Yfs*6 0.19 TCGA-AU-6004-01 1 93169000 93169000 A - EVI5 Frame_Shift_Del p.F216Lfs*15 0.16 TCGA-AU-6004-01 1 93303104 93303104 T C RPL5 Missense_Mutation p.Y207H 0.32 deleterious(0.04) probably_damaging(0.966) TCGA-AU-6004-01 20 20350770 20350770 T - INSM1 3'UTR 0.24 TCGA-AU-6004-01 20 23016315 23016315 C T SSTR4 Silent p.N65N 0.22 TCGA-AU-6004-01 20 23028939 23028939 C T THBD Silent p.P401P 0.28 TCGA-AU-6004-01 20 23383638 23383638 T - NAPB Frame_Shift_Del p.N57Ifs*48 0.17 TCGA-AU-6004-01 20 2381052 2381052 C T TGM6 Silent p.F317F 0.27 TCGA-AU-6004-01 20 2845056 2845057 - T VPS16 Frame_Shift_Ins p.M592Hfs*18 0.14 TCGA-AU-6004-01 20 30408168 30408168 C T MYLK2 Missense_Mutation p.P98S 0.37 deleterious_low_confidence(0.04) benign(0.099) TCGA-AU-6004-01 20 30753429 30753429 C T TM9SF4 3'UTR 0.18 TCGA-AU-6004-01 20 31023045 31023046 - C ASXL1 Frame_Shift_Ins p.S846Qfs*5 0.20 TCGA-AU-6004-01 20 31825973 31825973 G T BPIFA1 Silent p.L91L 0.21 TCGA-AU-6004-01 20 32232360 32232360 G A CBFA2T2 Missense_Mutation p.V575M 0.26 tolerated(0.06) benign(0.009) TCGA-AU-6004-01 20 34022109 34022109 G A GDF5 Silent p.T368T 0.22 TCGA-AU-6004-01 20 35802405 35802405 T G MROH8 Missense_Mutation p.E151D 0.14 tolerated_low_confidence(0.12) benign(0.05) TCGA-AU-6004-01 20 36775236 36775236 C T TGM2 Missense_Mutation p.G248S 0.25 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 20 40161694 40161694 C T CHD6 Silent p.K183K 0.26 TCGA-AU-6004-01 20 44141224 44141224 C T SPINT3 3'UTR 0.31 TCGA-AU-6004-01 20 44596970 44596970 G A ZNF335 Silent p.G158G 0.22 TCGA-AU-6004-01 20 45905373 45905373 A G ZMYND8 Missense_Mutation p.Y389H 0.04 deleterious(0) probably_damaging(0.975) TCGA-AU-6004-01 20 48129710 48129710 G A PTGIS Silent p.D371D 0.20 TCGA-AU-6004-01 20 48257123 48257123 C T B4GALT5 Missense_Mutation p.C229Y 0.14 deleterious(0) probably_damaging(0.959) TCGA-AU-6004-01 20 49577521 49577521 C T MOCS3 3'UTR 0.24 TCGA-AU-6004-01 20 50406579 50406579 T C SALL4 Missense_Mutation p.S815G 0.23 tolerated(0.32) benign(0.001) TCGA-AU-6004-01 20 51872210 51872210 A G TSHZ2 Missense_Mutation p.D738G 0.26 deleterious(0) benign(0.383) TCGA-AU-6004-01 20 57415202 57415202 G A RP4-806M20.3 5'Flank 0.22 TCGA-AU-6004-01 20 57599544 57599544 C T TUBB1 Silent p.C354C 0.21 TCGA-AU-6004-01 20 6022628 6022628 C T LRRN4 Silent p.P421P 0.27 TCGA-AU-6004-01 20 60419758 60419758 G A CDH4 Missense_Mutation p.R204Q 0.22 tolerated(0.28) possibly_damaging(0.648) TCGA-AU-6004-01 20 60854383 60854383 T C OSBPL2 Missense_Mutation p.L221P 0.22 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 20 61143820 61143820 C T C20orf166 5'Flank 0.22 TCGA-AU-6004-01 20 61982006 61982006 G T CHRNA4 Missense_Mutation p.P253T 0.21 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 20 61987738 61987738 G A CHRNA4 Silent p.N86N 0.17 TCGA-AU-6004-01 20 62045451 62045451 T C KCNQ2 Missense_Mutation p.R541G 0.25 deleterious(0) probably_damaging(0.995) TCGA-AU-6004-01 20 62705291 62705291 C T RGS19 Missense_Mutation p.R190Q 0.27 tolerated(0.05) probably_damaging(0.982) TCGA-AU-6004-01 21 11038883 11038883 G A BAGE2 RNA 0.07 TCGA-AU-6004-01 21 15399867 15399867 C T AP001347.6 RNA 0.15 TCGA-AU-6004-01 21 30354658 30354658 A G LTN1 Silent p.P249P 0.20 TCGA-AU-6004-01 21 31015282 31015282 G A GRIK1 Missense_Mutation p.A321V 0.28 tolerated(0.27) benign(0.139) TCGA-AU-6004-01 21 31964935 31964935 C G KRTAP6-3 Silent p.G50G 0.22 TCGA-AU-6004-01 21 34117195 34117195 A G PAXBP1 Missense_Mutation p.S700P 0.17 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 21 34400944 34400944 C T OLIG2 3'UTR 0.21 TCGA-AU-6004-01 21 45152409 45152409 T C PDXK Intron 0.24 TCGA-AU-6004-01 21 46066471 46066471 C T KRTAP10-11 Silent p.S32S 0.27 TCGA-AU-6004-01 21 46644723 46644723 A - ADARB1 3'UTR 0.14 TCGA-AU-6004-01 22 16150965 16150965 G T AP000525.9 RNA 0.10 TCGA-AU-6004-01 22 16287859 16287859 C T POTEH Silent p.P9P 0.15 TCGA-AU-6004-01 22 18769200 18769200 C T GGT3P RNA 0.09 TCGA-AU-6004-01 22 18894211 18894211 C T DGCR6 Missense_Mutation p.R82C 0.21 deleterious(0) probably_damaging(0.928) TCGA-AU-6004-01 22 19029365 19029365 G A DGCR2 Missense_Mutation p.R372C 0.24 deleterious(0) possibly_damaging(0.77) TCGA-AU-6004-01 22 19119959 19119959 C T TSSK2 Silent p.S349S 0.23 TCGA-AU-6004-01 22 20130515 20130515 G - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.25 TCGA-AU-6004-01 22 20229151 20229151 G A RTN4R 3'UTR 0.09 TCGA-AU-6004-01 22 20795948 20795948 T C KLHL22 3'UTR 0.26 TCGA-AU-6004-01 22 21383649 21383649 G A SLC7A4 Missense_Mutation p.R570C 0.18 tolerated(0.15) benign(0.014) TCGA-AU-6004-01 22 21470438 21470438 A C KB-1592A4.15 RNA 0.24 TCGA-AU-6004-01 22 21988780 21988780 A G CCDC116 Missense_Mutation p.Q181R 0.16 tolerated(1) benign(0.002) TCGA-AU-6004-01 22 22385649 22385649 T C IGLV4-69 Silent p.S46S 0.25 TCGA-AU-6004-01 22 23524126 23524126 G A BCR Missense_Mutation p.G327S 0.16 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-AU-6004-01 22 23653972 23653972 G A BCR Missense_Mutation p.V1091M 0.07 deleterious(0) benign(0) TCGA-AU-6004-01 22 24121514 24121514 C T MMP11 Silent p.P83P 0.36 TCGA-AU-6004-01 22 24384238 24384241 GACC - GSTT1 5'UTR 0.24 TCGA-AU-6004-01 22 28504150 28504150 G A TTC28 Silent p.A561A 0.18 TCGA-AU-6004-01 22 29708418 29708418 G A GAS2L1 3'Flank 0.22 TCGA-AU-6004-01 22 30067890 30067890 A T NF2 Missense_Mutation p.R359W 0.19 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 22 31003359 31003360 - G TCN2 Frame_Shift_Ins p.A16Gfs*4 0.23 TCGA-AU-6004-01 22 31485922 31485922 C - SMTN Frame_Shift_Del p.S239Afs*118 0.21 TCGA-AU-6004-01 22 31519095 31519095 C T INPP5J Missense_Mutation p.A32V 0.24 tolerated_low_confidence(0.38) benign(0.001) TCGA-AU-6004-01 22 31529093 31529093 A G INPP5J Missense_Mutation p.R367G 0.08 tolerated(0.18) possibly_damaging(0.755) TCGA-AU-6004-01 22 31601123 31601123 C A RNF185 3'UTR 0.07 TCGA-AU-6004-01 22 31740706 31740706 C A PATZ1 Missense_Mutation p.G295C 0.30 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 22 32012744 32012744 G A SFI1 Missense_Mutation p.R1105Q 0.30 tolerated(0.36) benign(0.078) TCGA-AU-6004-01 22 32275529 32275529 C T DEPDC5 Missense_Mutation p.A1266V 0.17 tolerated(0.19) benign(0.001) TCGA-AU-6004-01 22 32480893 32480893 G A SLC5A1 Missense_Mutation p.V298M 0.27 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 22 36745010 36745010 C T MYH9 Missense_Mutation p.C91Y 0.24 probably_damaging(0.968) TCGA-AU-6004-01 22 36872794 36872794 C T TXN2 Missense_Mutation p.A125T 0.19 deleterious(0.03) possibly_damaging(0.618) TCGA-AU-6004-01 22 38130495 38130495 G T TRIOBP Missense_Mutation p.E1384D 0.06 deleterious_low_confidence(0.02) benign(0.003) TCGA-AU-6004-01 22 40283421 40283421 T C ENTHD1 Missense_Mutation p.E111G 0.21 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 22 40574036 40574037 - A TNRC6B 5'UTR 0.18 TCGA-AU-6004-01 22 40711974 40711974 T C TNRC6B Silent p.V1644V 0.22 TCGA-AU-6004-01 22 42322117 42322117 C T TNFRSF13C Missense_Mutation p.G119R 0.08 tolerated(0.46) benign(0.001) TCGA-AU-6004-01 22 42610544 42610544 A G TCF20 Silent p.S256S 0.24 TCGA-AU-6004-01 22 43565516 43565516 G A TTLL12 Missense_Mutation p.T545M 0.10 tolerated(0.06) possibly_damaging(0.553) TCGA-AU-6004-01 22 44285360 44285360 A G PNPLA5 Missense_Mutation p.I184T 0.21 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 22 44559805 44559805 C T PARVB Missense_Mutation p.P371L 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-AU-6004-01 22 46793728 46793728 C - CELSR1 Frame_Shift_Del p.T1849Rfs*8 0.22 TCGA-AU-6004-01 22 50439188 50439189 - C IL17REL Frame_Shift_Ins p.Q72Afs*118 0.24 TCGA-AU-6004-01 22 50635876 50635876 A G TRABD Splice_Site p.X178_splice 0.23 TCGA-AU-6004-01 22 50943918 50943918 G A LMF2 Missense_Mutation p.A322V 0.24 tolerated(0.16) benign(0.201) TCGA-AU-6004-01 22 50957116 50957116 G A NCAPH2 Missense_Mutation p.V229M 0.31 tolerated(0.3) benign(0.016) TCGA-AU-6004-01 22 50989302 50989302 G A KLHDC7B 3'UTR 0.08 TCGA-AU-6004-01 2 100019515 100019519 TTTCT - REV1 Frame_Shift_Del p.R1073Qfs*18 0.12 TCGA-AU-6004-01 2 101019108 101019108 G A CHST10 Missense_Mutation p.A37V 0.26 tolerated(0.29) benign(0.001) TCGA-AU-6004-01 2 10908887 10908887 G A ATP6V1C2 Missense_Mutation p.A141T 0.12 tolerated(0.1) benign(0.079) TCGA-AU-6004-01 2 109368122 109368122 T C RANBP2 Missense_Mutation p.W532R 0.12 deleterious(0) benign(0.017) TCGA-AU-6004-01 2 110849315 110849315 G A MALL Silent p.A46A 0.07 TCGA-AU-6004-01 2 111886366 111886366 C A BCL2L11 Intron 0.23 TCGA-AU-6004-01 2 112630689 112630689 C T ANAPC1 Intron 0.38 TCGA-AU-6004-01 2 112824523 112824523 A - TMEM87B Frame_Shift_Del p.K111Nfs*14 0.20 TCGA-AU-6004-01 2 113994216 113994216 C T PAX8 Missense_Mutation p.R287H 0.21 tolerated(0.09) possibly_damaging(0.72) TCGA-AU-6004-01 2 120003180 120003180 C T STEAP3 Silent p.S46S 0.08 TCGA-AU-6004-01 2 125320801 125320801 C T CNTNAP5 Missense_Mutation p.P552S 0.21 deleterious(0.01) benign(0.126) TCGA-AU-6004-01 2 132250407 132250407 C A MZT2A 5'Flank 0.16 TCGA-AU-6004-01 2 133542811 133542811 T C NCKAP5 Missense_Mutation p.T525A 0.28 tolerated(0.31) benign(0.234) TCGA-AU-6004-01 2 162280623 162280623 C T TBR1 Missense_Mutation p.T645M 0.20 deleterious(0) benign(0.412) TCGA-AU-6004-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.43 TCGA-AU-6004-01 2 170097703 170097703 G A LRP2 Silent p.N1280N 0.21 TCGA-AU-6004-01 2 170361468 170361468 C T BBS5 3'UTR 0.22 TCGA-AU-6004-01 2 170591635 170591635 T C KLHL23 Silent p.D37D 0.24 TCGA-AU-6004-01 2 171687642 171687642 G A GAD1 Missense_Mutation p.E163K 0.21 tolerated(0.13) probably_damaging(0.939) TCGA-AU-6004-01 2 172965544 172965544 C A DLX2 Silent p.P238P 0.29 TCGA-AU-6004-01 2 174774894 174774894 T - SP3 Frame_Shift_Del p.G708Vfs*20 0.20 TCGA-AU-6004-01 2 178879089 178879089 A G PDE11A Silent p.G337G 0.18 TCGA-AU-6004-01 2 179396694 179396694 C T TTN Missense_Mutation p.R34883H 0.31 TCGA-AU-6004-01 2 179397618 179397618 C T TTN Missense_Mutation p.R34575H 0.22 TCGA-AU-6004-01 2 179431781 179431781 G A TTN Missense_Mutation p.R26360C 0.19 TCGA-AU-6004-01 2 182982012 182982012 G A PPP1R1C Missense_Mutation p.R114Q 0.23 tolerated_low_confidence(0.24) benign(0) TCGA-AU-6004-01 2 187626933 187626933 C T FAM171B Nonsense_Mutation p.R622* 0.23 TCGA-AU-6004-01 2 187627229 187627229 C T FAM171B Silent p.L720L 0.21 TCGA-AU-6004-01 2 189870155 189870155 C T COL3A1 Missense_Mutation p.A1004V 0.07 probably_damaging(0.994) TCGA-AU-6004-01 2 196544753 196544753 T C SLC39A10 Intron 0.15 TCGA-AU-6004-01 2 196602560 196602560 A - DNAH7 3'UTR 0.38 TCGA-AU-6004-01 2 197171263 197171263 G - HECW2 Frame_Shift_Del p.V922* 0.23 TCGA-AU-6004-01 2 197735662 197735662 T C PGAP1 Intron 0.29 TCGA-AU-6004-01 2 201436992 201436992 A - SGOL2 Frame_Shift_Del p.G644Vfs*18 0.22 TCGA-AU-6004-01 2 203397430 203397431 TA - BMPR2 Frame_Shift_Del p.M418Efs*29 0.21 TCGA-AU-6004-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.21 TCGA-AU-6004-01 2 20451242 20451242 A - PUM2 3'UTR 0.43 TCGA-AU-6004-01 2 20886635 20886635 G A C2orf43 3'UTR 0.20 TCGA-AU-6004-01 2 217525351 217525351 G - IGFBP2 Frame_Shift_Del p.G173Efs*13 0.15 TCGA-AU-6004-01 2 218674975 218674975 C T TNS1 Silent p.G1596G 0.23 TCGA-AU-6004-01 2 218696258 218696258 G - TNS1 Frame_Shift_Del p.P973Rfs*13 0.28 TCGA-AU-6004-01 2 220073942 220073942 G A ZFAND2B Intron 0.24 TCGA-AU-6004-01 2 220437004 220437004 T C INHA 5'UTR 0.18 TCGA-AU-6004-01 2 223917787 223917787 G - KCNE4 Frame_Shift_Del p.E82Rfs*3 0.21 TCGA-AU-6004-01 2 230668729 230668730 - T TRIP12 Frame_Shift_Ins p.N880Kfs*36 0.16 TCGA-AU-6004-01 2 231973734 231973734 T G HTR2B Missense_Mutation p.T315P 0.16 deleterious(0.01) probably_damaging(0.922) TCGA-AU-6004-01 2 239140779 239140779 T C AC016757.3 5'Flank 0.06 TCGA-AU-6004-01 2 23916290 23916290 C T KLHL29 Silent p.D478D 0.24 TCGA-AU-6004-01 2 24086326 24086326 A - ATAD2B Frame_Shift_Del p.F468Lfs*9 0.20 TCGA-AU-6004-01 2 240961723 240961723 C T NDUFA10 Missense_Mutation p.R37H 0.22 deleterious(0.04) benign(0.008) TCGA-AU-6004-01 2 243056802 243056802 C T AC093642.5 RNA 0.15 TCGA-AU-6004-01 2 243056854 243056854 A G AC093642.5 RNA 0.14 TCGA-AU-6004-01 2 26798961 26798961 G A C2orf70 Missense_Mutation p.R89Q 0.25 tolerated(0.35) benign(0.002) TCGA-AU-6004-01 2 27709060 27709060 A - IFT172 Intron 0.23 TCGA-AU-6004-01 2 27730849 27730849 C T GCKR Missense_Mutation p.L416F 0.27 tolerated(0.11) probably_damaging(0.953) TCGA-AU-6004-01 2 29416369 29416369 G A ALK Silent p.H1528H 0.24 TCGA-AU-6004-01 2 30480558 30480558 G A LBH 3'UTR 0.19 TCGA-AU-6004-01 2 32530684 32530684 A G YIPF4 Missense_Mutation p.T242A 0.19 deleterious(0.01) benign(0.184) TCGA-AU-6004-01 2 32626447 32626448 - A BIRC6 Frame_Shift_Ins p.M418Nfs*8 0.20 TCGA-AU-6004-01 2 36704113 36704113 G A CRIM1 Missense_Mutation p.R358Q 0.05 tolerated(0.61) benign(0.012) TCGA-AU-6004-01 2 42883419 42883419 T C MTA3 Silent p.I193I 0.19 TCGA-AU-6004-01 2 45774694 45774694 G A SRBD1 Missense_Mutation p.A578V 0.25 tolerated(0.09) possibly_damaging(0.556) TCGA-AU-6004-01 2 47613825 47613825 C T EPCAM 3'UTR 0.26 TCGA-AU-6004-01 2 47705448 47705448 T C MSH2 Silent p.L750L 0.06 TCGA-AU-6004-01 2 54483005 54483005 G A TSPYL6 Missense_Mutation p.A95V 0.26 tolerated(0.24) benign(0.009) TCGA-AU-6004-01 2 55077114 55077114 A G EML6 Silent p.V401V 0.20 TCGA-AU-6004-01 2 5841301 5841301 C A SOX11 3'UTR 0.16 TCGA-AU-6004-01 2 62728426 62728426 C T TMEM17 Missense_Mutation p.R172H 0.10 tolerated(0.37) benign(0.003) TCGA-AU-6004-01 2 63175475 63175478 ACTG - EHBP1 Frame_Shift_Del p.T535Lfs*2 0.22 TCGA-AU-6004-01 2 65248056 65248056 A G SLC1A4 Missense_Mutation p.T459A 0.20 tolerated(0.33) probably_damaging(0.999) TCGA-AU-6004-01 2 69045049 69045049 G A ARHGAP25 Missense_Mutation p.S309N 0.25 tolerated(0.11) benign(0.182) TCGA-AU-6004-01 2 70142446 70142446 C T MXD1 5'UTR 0.26 TCGA-AU-6004-01 2 7027241 7027241 C T RSAD2 Silent p.N228N 0.22 TCGA-AU-6004-01 2 71212146 71212147 CA - ANKRD53 Frame_Shift_Del p.T438Sfs*15 0.28 TCGA-AU-6004-01 2 71303790 71303790 C T NAGK Silent p.L288L 0.23 TCGA-AU-6004-01 2 71906295 71906295 T - DYSF Frame_Shift_Del p.F1999Lfs*6 0.21 TCGA-AU-6004-01 2 74007188 74007188 A G DUSP11 Missense_Mutation p.C19R 0.25 deleterious_low_confidence(0.04) benign(0) TCGA-AU-6004-01 2 85361008 85361008 G A TCF7L1 Silent p.S67S 0.26 TCGA-AU-6004-01 2 85536429 85536429 C T TCF7L1 Silent p.S537S 0.24 TCGA-AU-6004-01 2 88485604 88485604 C T THNSL2 Nonsense_Mutation p.R473* 0.21 TCGA-AU-6004-01 2 95847120 95847120 T - ZNF2 Frame_Shift_Del p.F184Lfs*38 0.16 TCGA-AU-6004-01 2 97034757 97034757 T C NCAPH Silent p.A682A 0.16 TCGA-AU-6004-01 2 97506647 97506647 C T ANKRD23 Silent p.P101P 0.06 TCGA-AU-6004-01 2 97749989 97749991 GCA - FAHD2B In_Frame_Del p.C237del 0.19 TCGA-AU-6004-01 2 99182199 99182199 C T INPP4A Missense_Mutation p.A755V 0.33 tolerated(0.23) benign(0.002) TCGA-AU-6004-01 3 10146443 10146443 G T FANCD2OS Missense_Mutation p.L6I 0.20 deleterious(0) probably_damaging(0.978) TCGA-AU-6004-01 3 108818240 108818240 A - MORC1 Frame_Shift_Del p.S130Lfs*14 0.11 TCGA-AU-6004-01 3 111639256 111639256 A - PHLDB2 Frame_Shift_Del p.K665Rfs*6 0.16 TCGA-AU-6004-01 3 111705850 111705850 T G ABHD10 Silent p.A176A 0.35 TCGA-AU-6004-01 3 119177080 119177080 T C TMEM39A Missense_Mutation p.S41G 0.28 tolerated(0.09) benign(0.183) TCGA-AU-6004-01 3 120321148 120321148 C T NDUFB4 3'UTR 0.08 TCGA-AU-6004-01 3 121642115 121642115 T C SLC15A2 Splice_Site p.X334_splice 0.18 TCGA-AU-6004-01 3 122003527 122003527 C - CASR Frame_Shift_Del p.S921Pfs*28 0.17 TCGA-AU-6004-01 3 122630793 122630793 C T SEMA5B Missense_Mutation p.R1061H 0.18 deleterious(0) probably_damaging(0.955) TCGA-AU-6004-01 3 12545174 12545174 A T TSEN2 Missense_Mutation p.Q241L 0.16 tolerated(0.16) benign(0.003) TCGA-AU-6004-01 3 127318266 127318266 C A MCM2 Missense_Mutation p.L38I 0.23 tolerated(0.16) benign(0.013) TCGA-AU-6004-01 3 127395161 127395161 G T ABTB1 Missense_Mutation p.G123W 0.24 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 3 128627047 128627047 G A ACAD9 Missense_Mutation p.R433Q 0.31 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 3 129034716 129034716 T G H1FX Silent p.P10P 0.23 TCGA-AU-6004-01 3 130716484 130716484 C T ATP2C1 Missense_Mutation p.R794C 0.15 deleterious(0) possibly_damaging(0.828) TCGA-AU-6004-01 3 130962339 130962339 A G NEK11 Silent p.L540L 0.24 TCGA-AU-6004-01 3 133342973 133342973 G A TOPBP1 Missense_Mutation p.P951S 0.19 tolerated(0.17) benign(0.217) TCGA-AU-6004-01 3 13415322 13415322 C T NUP210 Missense_Mutation p.A495T 0.27 tolerated(0.11) benign(0.234) TCGA-AU-6004-01 3 137484297 137484297 T C SOX14 Missense_Mutation p.M224T 0.19 deleterious_low_confidence(0) benign(0.2) TCGA-AU-6004-01 3 137484338 137484338 A G SOX14 Missense_Mutation p.T238A 0.20 tolerated_low_confidence(0.88) benign(0) TCGA-AU-6004-01 3 140281698 140281698 G A CLSTN2 Missense_Mutation p.R753H 0.24 tolerated(0.06) benign(0.005) TCGA-AU-6004-01 3 150282124 150282124 G A EIF2A Missense_Mutation p.R144H 0.21 deleterious(0.04) possibly_damaging(0.479) TCGA-AU-6004-01 3 150659398 150659398 A G CLRN1 Missense_Mutation p.L135P 0.18 tolerated(0.29) benign(0.018) TCGA-AU-6004-01 3 150877641 150877641 C T MED12L Missense_Mutation p.S287L 0.08 deleterious(0) probably_damaging(0.996) TCGA-AU-6004-01 3 155393927 155393927 A - PLCH1 5'Flank 0.21 TCGA-AU-6004-01 3 158415745 158415747 ATC - RARRES1 In_Frame_Del p.D229del 0.11 TCGA-AU-6004-01 3 165547794 165547794 G T BCHE Missense_Mutation p.T343N 0.21 tolerated(0.06) probably_damaging(0.924) TCGA-AU-6004-01 3 170078896 170078896 C T SKIL Silent p.G259G 0.31 TCGA-AU-6004-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.18 tolerated(0.11) possibly_damaging(0.529) TCGA-AU-6004-01 3 179426674 179426674 C T USP13 Missense_Mutation p.A245V 0.27 deleterious(0) probably_damaging(0.984) TCGA-AU-6004-01 3 180323592 180323593 - A TTC14 Frame_Shift_Ins p.Q302Tfs*15 0.24 TCGA-AU-6004-01 3 183041046 183041046 C T MCF2L2 Missense_Mutation p.G194S 0.19 tolerated(1) benign(0.003) TCGA-AU-6004-01 3 183493752 183493752 A G YEATS2 Silent p.G806G 0.22 TCGA-AU-6004-01 3 183508631 183508631 C T YEATS2 Missense_Mutation p.T987M 0.24 tolerated_low_confidence(0.75) benign(0.001) TCGA-AU-6004-01 3 183954170 183954170 C A VWA5B2 Missense_Mutation p.Q418K 0.24 deleterious(0.05) benign(0.348) TCGA-AU-6004-01 3 183956417 183956417 G A VWA5B2 Missense_Mutation p.R653H 0.16 tolerated(0.09) benign(0.014) TCGA-AU-6004-01 3 183959063 183959063 G A VWA5B2 Silent p.T1017T 0.06 TCGA-AU-6004-01 3 184039671 184039672 - C EIF4G1 Frame_Shift_Ins p.T443Hfs*40 0.18 TCGA-AU-6004-01 3 184586775 184586775 G A VPS8 Silent p.A516A 0.27 TCGA-AU-6004-01 3 186501382 186501382 T C EIF4A2 5'UTR 0.17 TCGA-AU-6004-01 3 193854456 193854457 TC - HES1 Frame_Shift_Del p.L54Efs*15 0.19 TCGA-AU-6004-01 3 194409570 194409570 G T FAM43A 3'UTR 0.18 TCGA-AU-6004-01 3 196807972 196807972 G A DLG1 Nonsense_Mutation p.R652* 0.24 TCGA-AU-6004-01 3 20194018 20194018 T - KAT2B 3'UTR 0.23 TCGA-AU-6004-01 3 33414638 33414638 A - FBXL2 Frame_Shift_Del p.I117Sfs*16 0.23 TCGA-AU-6004-01 3 36534656 36534656 T C STAC Missense_Mutation p.V234A 0.16 tolerated(0.91) benign(0.001) TCGA-AU-6004-01 3 38180279 38180279 C T MYD88 Missense_Mutation p.R43W 0.29 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 3 38263084 38263085 - T OXSR1 Frame_Shift_Ins p.L171Ffs*6 0.16 TCGA-AU-6004-01 3 42166944 42166944 G A TRAK1 Missense_Mutation p.E42K 0.18 deleterious(0.01) probably_damaging(0.97) TCGA-AU-6004-01 3 42907386 42907386 G C ACKR2 3'UTR 0.26 TCGA-AU-6004-01 3 42916994 42916994 T - CYP8B1 Frame_Shift_Del p.K105Nfs*4 0.22 TCGA-AU-6004-01 3 43641997 43641997 A C ANO10 Silent p.V72V 0.06 TCGA-AU-6004-01 3 44701323 44701323 A G ZNF35 Missense_Mutation p.T490A 0.19 deleterious(0.04) probably_damaging(0.927) TCGA-AU-6004-01 3 46063400 46063400 A - XCR1 Frame_Shift_Del p.Y14Tfs*33 0.23 TCGA-AU-6004-01 3 47894496 47894496 C T MAP4 3'UTR 0.22 TCGA-AU-6004-01 3 49719325 49719325 C - APEH Frame_Shift_Del p.H511Ifs*24 0.21 TCGA-AU-6004-01 3 49765576 49765576 C T IP6K1 Missense_Mutation p.S251N 0.19 deleterious(0) probably_damaging(0.99) TCGA-AU-6004-01 3 50085677 50085677 G A RBM6 Splice_Site p.X520_splice 0.27 TCGA-AU-6004-01 3 50414960 50414960 G T CACNA2D2 Missense_Mutation p.L522M 0.28 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.20 TCGA-AU-6004-01 3 51426411 51426411 G - MANF Frame_Shift_Del p.E149Rfs*16 0.21 TCGA-AU-6004-01 3 51897222 51897222 C T IQCF2 Missense_Mutation p.R111C 0.22 deleterious(0.03) possibly_damaging(0.467) TCGA-AU-6004-01 3 52255618 52255618 C T TLR9 Missense_Mutation p.R1059H 0.14 tolerated(0.1) benign(0.201) TCGA-AU-6004-01 3 52830640 52830640 G A ITIH3 Silent p.T86T 0.08 TCGA-AU-6004-01 3 53125802 53125802 G - RFT1 3'UTR 0.23 TCGA-AU-6004-01 3 53699823 53699823 T - CACNA1D Frame_Shift_Del p.F303Lfs*7 0.22 TCGA-AU-6004-01 3 53844281 53844281 A - CACNA1D Frame_Shift_Del p.N2071Tfs*16 0.21 TCGA-AU-6004-01 3 58110135 58110135 G T FLNB Missense_Mutation p.K1267N 0.25 deleterious(0.02) possibly_damaging(0.594) TCGA-AU-6004-01 3 69987147 69987147 G A MITF Missense_Mutation p.A177T 0.17 tolerated(0.06) probably_damaging(0.957) TCGA-AU-6004-01 3 73433148 73433148 T C PDZRN3 Missense_Mutation p.S857G 0.21 tolerated(0.48) benign(0) TCGA-AU-6004-01 3 7620356 7620356 C - GRM7 Frame_Shift_Del p.W590Gfs*3 0.22 TCGA-AU-6004-01 3 88041268 88041268 A T HTR1F 3'UTR 0.19 TCGA-AU-6004-01 3 8923099 8923099 C T RAD18 Missense_Mutation p.R477H 0.24 deleterious(0) probably_damaging(0.939) TCGA-AU-6004-01 3 98216876 98216876 G A OR5K2 Missense_Mutation p.V118M 0.08 tolerated(1) benign(0) TCGA-AU-6004-01 3 98216983 98216983 T C OR5K2 Silent p.N153N 0.13 TCGA-AU-6004-01 3 98217228 98217228 C T OR5K2 Missense_Mutation p.A235V 0.16 tolerated(0.26) benign(0.004) TCGA-AU-6004-01 3 98299552 98299552 C T CPOX Missense_Mutation p.R447H 0.24 deleterious(0.02) benign(0.142) TCGA-AU-6004-01 3 9877200 9877200 G A TTLL3 3'Flank 0.40 TCGA-AU-6004-01 4 100784948 100784948 C A DAPP1 Missense_Mutation p.L208I 0.24 tolerated(0.24) probably_damaging(0.968) TCGA-AU-6004-01 4 102951317 102951317 A - BANK1 Frame_Shift_Del p.T601Lfs*8 0.17 TCGA-AU-6004-01 4 106604279 106604279 T C INTS12 Missense_Mutation p.T334A 0.04 deleterious_low_confidence(0.04) benign(0.033) TCGA-AU-6004-01 4 113475072 113475072 G A C4orf21 Silent p.D1755D 0.20 TCGA-AU-6004-01 4 114823485 114823487 TTC - ARSJ In_Frame_Del p.K582del 0.26 TCGA-AU-6004-01 4 123107366 123107366 G A KIAA1109 Silent p.S178S 0.23 TCGA-AU-6004-01 4 126238633 126238633 G A FAT4 Missense_Mutation p.R356H 0.20 probably_damaging(0.988) TCGA-AU-6004-01 4 126411468 126411468 G T FAT4 Missense_Mutation p.E4497D 0.20 benign(0.115) TCGA-AU-6004-01 4 134111344 134111344 C T PCDH10 3'UTR 0.21 TCGA-AU-6004-01 4 1343337 1343337 G A UVSSA Missense_Mutation p.A42T 0.23 tolerated(0.22) benign(0.005) TCGA-AU-6004-01 4 13615994 13615994 T C BOD1L1 Missense_Mutation p.R334G 0.24 probably_damaging(0.962) TCGA-AU-6004-01 4 141484518 141484518 C T UCP1 Silent p.A160A 0.11 TCGA-AU-6004-01 4 143067125 143067126 - C INPP4B Frame_Shift_Ins p.K530Efs*15 0.20 TCGA-AU-6004-01 4 144361277 144361277 C T GAB1 Silent p.L443L 0.25 TCGA-AU-6004-01 4 148463810 148463810 T A EDNRA 3'UTR 0.17 TCGA-AU-6004-01 4 151392789 151392789 G A LRBA Silent p.L2229L 0.22 TCGA-AU-6004-01 4 151392836 151392836 G A LRBA Nonsense_Mutation p.R2214* 0.16 TCGA-AU-6004-01 4 154125645 154125646 - A TRIM2 5'UTR 0.20 TCGA-AU-6004-01 4 154216535 154216535 C T TRIM2 Missense_Mutation p.A286V 0.23 deleterious(0) benign(0.089) TCGA-AU-6004-01 4 155156633 155156633 G A DCHS2 Silent p.D2602D 0.24 TCGA-AU-6004-01 4 155156800 155156800 A G DCHS2 Missense_Mutation p.F2547L 0.21 tolerated(0.54) benign(0.006) TCGA-AU-6004-01 4 155529626 155529626 G T FGG Silent p.G281G 0.27 TCGA-AU-6004-01 4 156273869 156273869 T - MAP9 Frame_Shift_Del p.K567Rfs*13 0.15 TCGA-AU-6004-01 4 156294552 156294552 T - MAP9 Frame_Shift_Del p.M73* 0.09 TCGA-AU-6004-01 4 156698723 156698723 G A GUCY1B3 Missense_Mutation p.V76I 0.15 tolerated(0.05) benign(0.245) TCGA-AU-6004-01 4 158256900 158256900 C T GRIA2 Silent p.D448D 0.29 TCGA-AU-6004-01 4 162577548 162577548 G T FSTL5 Missense_Mutation p.L276M 0.21 tolerated(0.09) probably_damaging(0.996) TCGA-AU-6004-01 4 164246459 164246460 - T NPY1R Frame_Shift_Ins p.I384Nfs*12 0.19 TCGA-AU-6004-01 4 167022020 167022020 A - TLL1 Frame_Shift_Del p.K1013Nfs*23 0.19 TCGA-AU-6004-01 4 169611844 169611844 C T PALLD Missense_Mutation p.R476W 0.19 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 4 170398355 170398355 C T NEK1 Missense_Mutation p.R785H 0.15 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 4 175220236 175220236 C T CEP44 5'UTR 0.17 TCGA-AU-6004-01 4 17819713 17819713 T C NCAPG Splice_Site p.X373_splice 0.24 TCGA-AU-6004-01 4 183714567 183714567 T - TENM3 Frame_Shift_Del p.Y2250Mfs*4 0.19 TCGA-AU-6004-01 4 185550399 185550399 A - CASP3 3'UTR 0.23 TCGA-AU-6004-01 4 185940190 185940190 G A HELT Silent p.P36P 0.24 TCGA-AU-6004-01 4 187541547 187541547 C T FAT1 Missense_Mutation p.V2065I 0.23 benign(0.055) TCGA-AU-6004-01 4 2814072 2814072 G T SH3BP2 5'UTR 0.04 TCGA-AU-6004-01 4 3449218 3449219 - C HGFAC Frame_Shift_Ins p.R455Qfs*91 0.19 TCGA-AU-6004-01 4 38829562 38829562 C T TLR6 Silent p.S511S 0.15 TCGA-AU-6004-01 4 39483067 39483067 T C LIAS 3'Flank 0.21 TCGA-AU-6004-01 4 39757280 39757280 C T UBE2K Missense_Mutation p.R74W 0.25 deleterious(0) probably_damaging(0.983) TCGA-AU-6004-01 4 40818171 40818171 G A APBB2 Nonsense_Mutation p.R740* 0.05 TCGA-AU-6004-01 4 435696 435696 C T ZNF721 Missense_Mutation p.V854I 0.18 tolerated(0.22) benign(0.002) TCGA-AU-6004-01 4 44449773 44449773 G A KCTD8 Silent p.R256R 0.07 TCGA-AU-6004-01 4 46994964 46994964 C T GABRA4 Splice_Site p.X29_splice 0.23 TCGA-AU-6004-01 4 5458636 5458636 G C STK32B Missense_Mutation p.A257P 0.24 deleterious(0.04) possibly_damaging(0.643) TCGA-AU-6004-01 4 57180525 57180525 C T KIAA1211 Missense_Mutation p.A286V 0.23 tolerated(0.27) unknown(0) TCGA-AU-6004-01 4 5827324 5827324 A G CRMP1 Silent p.A622A 0.25 TCGA-AU-6004-01 4 5961279 5961279 G A C4orf50 Silent p.P692P 0.18 TCGA-AU-6004-01 4 70709888 70709888 T C SULT1E1 Missense_Mutation p.M255V 0.24 deleterious(0) benign(0.245) TCGA-AU-6004-01 4 71275428 71275429 - T PROL1 Frame_Shift_Ins p.L131Sfs*9 0.14 TCGA-AU-6004-01 4 73148906 73148906 C T ADAMTS3 Missense_Mutation p.G1189R 0.16 deleterious_low_confidence(0.05) benign(0.031) TCGA-AU-6004-01 4 73185052 73185052 A T ADAMTS3 Missense_Mutation p.I450N 0.22 deleterious(0) probably_damaging(0.979) TCGA-AU-6004-01 4 74316469 74316469 C T AFP Missense_Mutation p.A476V 0.26 tolerated(0.5) benign(0.081) TCGA-AU-6004-01 4 74853268 74853268 C T PPBP Missense_Mutation p.G84R 0.22 tolerated(1) benign(0.004) TCGA-AU-6004-01 4 77932947 77932947 T C SEPT11 Missense_Mutation p.L133S 0.20 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 4 79207630 79207630 C T FRAS1 Missense_Mutation p.R491W 0.20 possibly_damaging(0.462) TCGA-AU-6004-01 4 79410138 79410138 G A FRAS1 Silent p.R2954R 0.07 TCGA-AU-6004-01 4 85672710 85672710 G A WDFY3 Missense_Mutation p.R1967W 0.20 deleterious(0) probably_damaging(0.996) TCGA-AU-6004-01 4 85710903 85710903 A C WDFY3 Missense_Mutation p.D1215E 0.16 deleterious(0) possibly_damaging(0.682) TCGA-AU-6004-01 4 91645097 91645097 G A CCSER1 Silent p.T655T 0.24 TCGA-AU-6004-01 4 955359 955359 A G DGKQ Missense_Mutation p.S824P 0.17 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 4 9784695 9784695 G A DRD5 Missense_Mutation p.G348S 0.26 deleterious(0) probably_damaging(0.996) TCGA-AU-6004-01 4 9785349 9785349 G C DRD5 3'UTR 0.24 TCGA-AU-6004-01 4 9785421 9785421 G T DRD5 3'UTR 0.14 TCGA-AU-6004-01 5 1085356 1085356 G - SLC12A7 Frame_Shift_Del p.P303Rfs*129 0.22 TCGA-AU-6004-01 5 122713213 122713213 T - CEP120 Frame_Shift_Del p.K738Rfs*29 0.21 TCGA-AU-6004-01 5 122923799 122923799 T C CSNK1G3 Silent p.H237H 0.26 TCGA-AU-6004-01 5 126770443 126770443 C T MEGF10 Silent p.S635S 0.13 TCGA-AU-6004-01 5 126993353 126993353 G A CTXN3 Missense_Mutation p.R47Q 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-AU-6004-01 5 127641612 127641612 G A FBN2 Silent p.G1817G 0.24 TCGA-AU-6004-01 5 130857177 130857177 T - RAPGEF6 Frame_Shift_Del p.N178Tfs*6 0.14 TCGA-AU-6004-01 5 132652261 132652263 CTT - FSTL4 In_Frame_Del p.E164del 0.19 TCGA-AU-6004-01 5 133308512 133308512 C T VDAC1 Missense_Mutation p.V268I 0.16 tolerated(0.6) benign(0.002) TCGA-AU-6004-01 5 133896554 133896554 C T JADE2 Silent p.D197D 0.24 TCGA-AU-6004-01 5 137593480 137593480 G A GFRA3 Silent p.H211H 0.29 TCGA-AU-6004-01 5 13864702 13864702 A - DNAH5 Frame_Shift_Del p.L1467Wfs*3 0.18 TCGA-AU-6004-01 5 138994491 138994491 G A UBE2D2 Missense_Mutation p.G82S 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AU-6004-01 5 140038688 140038688 G A IK Missense_Mutation p.R372Q 0.26 tolerated(0.49) probably_damaging(0.921) TCGA-AU-6004-01 5 140188444 140188444 G A PCDHA4 Missense_Mutation p.E558K 0.24 deleterious_low_confidence(0.02) benign(0.081) TCGA-AU-6004-01 5 140229580 140229580 C T PCDHA9 Silent p.G500G 0.07 TCGA-AU-6004-01 5 140250051 140250051 G A PCDHA11 Missense_Mutation p.A455T 0.23 tolerated_low_confidence(0.07) benign(0.031) TCGA-AU-6004-01 5 140250876 140250876 G A PCDHA11 Missense_Mutation p.A730T 0.04 tolerated_low_confidence(0.17) benign(0.011) TCGA-AU-6004-01 5 140348209 140348210 - T PCDHAC2 Frame_Shift_Ins p.Y622Lfs*8 0.19 TCGA-AU-6004-01 5 140517421 140517421 C T PCDHB5 3'UTR 0.21 TCGA-AU-6004-01 5 140531423 140531423 G A PCDHB6 Missense_Mutation p.V529M 0.22 deleterious(0) probably_damaging(0.985) TCGA-AU-6004-01 5 140553146 140553146 C T PCDHB7 Missense_Mutation p.R244W 0.24 deleterious_low_confidence(0) benign(0.071) TCGA-AU-6004-01 5 141693978 141693978 G A SPRY4 Silent p.C255C 0.25 TCGA-AU-6004-01 5 141694154 141694154 G - SPRY4 Frame_Shift_Del p.R197Gfs*85 0.24 TCGA-AU-6004-01 5 14487619 14487619 C G TRIO Silent p.G2294G 0.24 TCGA-AU-6004-01 5 14488223 14488223 C T TRIO Nonsense_Mutation p.R2496* 0.37 TCGA-AU-6004-01 5 148421000 148421000 G A SH3TC2 Missense_Mutation p.P237L 0.23 deleterious(0.02) possibly_damaging(0.847) TCGA-AU-6004-01 5 148627394 148627394 G A ABLIM3 Missense_Mutation p.R534Q 0.28 tolerated(0.06) possibly_damaging(0.862) TCGA-AU-6004-01 5 149001489 149001489 C T ARHGEF37 Missense_Mutation p.S400L 0.27 deleterious(0) possibly_damaging(0.612) TCGA-AU-6004-01 5 149460545 149460545 A G CSF1R Missense_Mutation p.V31A 0.25 deleterious(0.02) benign(0.193) TCGA-AU-6004-01 5 150028841 150028841 G T SYNPO Missense_Mutation p.R579M 0.24 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 5 150490206 150490206 C A ANXA6 Splice_Site p.X525_splice 0.05 TCGA-AU-6004-01 5 150660599 150660599 G A SLC36A3 Missense_Mutation p.R415C 0.28 deleterious(0.02) possibly_damaging(0.709) TCGA-AU-6004-01 5 152870393 152870393 A - GRIA1 5'Flank 0.16 TCGA-AU-6004-01 5 15500726 15500726 G A FBXL7 5'UTR 0.33 TCGA-AU-6004-01 5 156917397 156917397 A G ADAM19 Missense_Mutation p.Y721H 0.28 tolerated(0.06) possibly_damaging(0.51) TCGA-AU-6004-01 5 162945457 162945457 A C MAT2B 3'UTR 0.17 TCGA-AU-6004-01 5 16702660 16702660 C T MYO10 Missense_Mutation p.A850T 0.16 tolerated(0.47) benign(0.005) TCGA-AU-6004-01 5 169129409 169129409 C T DOCK2 Missense_Mutation p.A454V 0.20 deleterious(0) benign(0.067) TCGA-AU-6004-01 5 172752952 172752952 G A STC2 Silent p.F71F 0.20 TCGA-AU-6004-01 5 178459750 178459750 A G ZNF879 Silent p.K267K 0.10 TCGA-AU-6004-01 5 179193279 179193279 C - MAML1 Frame_Shift_Del p.P424Rfs*17 0.21 TCGA-AU-6004-01 5 179267905 179267905 C T C5orf45 Silent p.S168S 0.09 TCGA-AU-6004-01 5 180017166 180017166 C T SCGB3A1 3'UTR 0.23 TCGA-AU-6004-01 5 180622643 180622643 C T TRIM7 Silent p.P353P 0.23 TCGA-AU-6004-01 5 32058108 32058108 G A PDZD2 Missense_Mutation p.G700E 0.23 deleterious(0) probably_damaging(0.952) TCGA-AU-6004-01 5 37065024 37065024 G T NIPBL 3'UTR 0.12 TCGA-AU-6004-01 5 43506339 43506339 A - C5orf34 Frame_Shift_Del p.L148Cfs*26 0.19 TCGA-AU-6004-01 5 50091092 50091093 - A PARP8 Frame_Shift_Ins p.N425Kfs*19 0.27 TCGA-AU-6004-01 5 53814500 53814500 G A SNX18 Missense_Mutation p.G240R 0.05 tolerated(0.11) probably_damaging(0.995) TCGA-AU-6004-01 5 53814705 53814705 C T SNX18 Missense_Mutation p.P308L 0.07 deleterious(0) benign(0.353) TCGA-AU-6004-01 5 53814970 53814970 G T SNX18 Missense_Mutation p.K396N 0.27 tolerated(0.06) probably_damaging(0.994) TCGA-AU-6004-01 5 5462752 5462753 - G KIAA0947 Frame_Shift_Ins p.D1105Rfs*4 0.17 TCGA-AU-6004-01 5 54654501 54654501 C T SKIV2L2 Missense_Mutation p.P545L 0.23 deleterious(0) benign(0.178) TCGA-AU-6004-01 5 54948375 54948375 A - SLC38A9 Frame_Shift_Del p.S312Qfs*6 0.20 TCGA-AU-6004-01 5 55056044 55056044 T G DDX4 Silent p.P48P 0.26 TCGA-AU-6004-01 5 56219767 56219767 T - MIER3 Frame_Shift_Del p.R342Dfs*15 0.18 TCGA-AU-6004-01 5 64859204 64859205 - A PPWD1 Frame_Shift_Ins p.T25Nfs*20 0.20 TCGA-AU-6004-01 5 65370920 65370920 C - ERBB2IP Frame_Shift_Del p.P1284Lfs*14 0.19 TCGA-AU-6004-01 5 6755026 6755026 C T PAPD7 Missense_Mutation p.R533W 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AU-6004-01 5 68687730 68687730 G A RAD17 Missense_Mutation p.R371Q 0.09 tolerated(0.49) benign(0.009) TCGA-AU-6004-01 5 68715826 68715826 C G MARVELD2 Missense_Mutation p.A205G 0.17 tolerated(0.41) possibly_damaging(0.651) TCGA-AU-6004-01 5 75597258 75597258 G A SV2C Missense_Mutation p.G630S 0.05 tolerated(0.33) probably_damaging(0.922) TCGA-AU-6004-01 5 7709399 7709399 C T ADCY2 Missense_Mutation p.R493C 0.22 deleterious(0) possibly_damaging(0.776) TCGA-AU-6004-01 5 7826972 7826972 C T ADCY2 Silent p.N1088N 0.22 TCGA-AU-6004-01 5 78379517 78379517 G A BHMT2 Missense_Mutation p.G283E 0.20 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 5 79030050 79030050 A - CMYA5 Frame_Shift_Del p.K1823Rfs*17 0.22 TCGA-AU-6004-01 6 108497770 108497770 G A NR2E1 Missense_Mutation p.R108H 0.04 deleterious(0.05) possibly_damaging(0.813) TCGA-AU-6004-01 6 109752404 109752404 C T PPIL6 Missense_Mutation p.A126T 0.23 tolerated(0.07) probably_damaging(0.978) TCGA-AU-6004-01 6 109770631 109770631 G T MICAL1 Missense_Mutation p.D496E 0.16 tolerated(0.49) benign(0.05) TCGA-AU-6004-01 6 110763806 110763806 G T SLC22A16 Missense_Mutation p.S275Y 0.34 deleterious(0) probably_damaging(0.983) TCGA-AU-6004-01 6 116752264 116752264 T C DSE Missense_Mutation p.M273T 0.18 tolerated(0.09) benign(0.079) TCGA-AU-6004-01 6 123818394 123818394 T C TRDN Missense_Mutation p.Q266R 0.23 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-AU-6004-01 6 126202240 126202240 T - NCOA7 Frame_Shift_Del p.F156Lfs*12 0.21 TCGA-AU-6004-01 6 127836077 127836077 C T SOGA3 Missense_Mutation p.C406Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 6 130425575 130425575 G A L3MBTL3 Missense_Mutation p.A581T 0.20 tolerated(0.17) benign(0.031) TCGA-AU-6004-01 6 130761923 130761923 A G TMEM200A Missense_Mutation p.H119R 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-AU-6004-01 6 131216229 131216229 C T EPB41L2 Missense_Mutation p.V423M 0.19 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 6 13305330 13305330 C T TBC1D7 3'UTR 0.28 TCGA-AU-6004-01 6 135299905 135299905 C T HBS1L Missense_Mutation p.G570D 0.18 tolerated(1) benign(0.003) TCGA-AU-6004-01 6 137018457 137018457 A G MAP3K5 Missense_Mutation p.L292S 0.22 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 6 144801043 144801043 C A UTRN Silent p.A1144A 0.27 TCGA-AU-6004-01 6 146121412 146121412 T G FBXO30 Missense_Mutation p.N690H 0.22 tolerated(0.13) benign(0.04) TCGA-AU-6004-01 6 147123837 147123837 C T ADGB Intron 0.22 TCGA-AU-6004-01 6 148865487 148865487 C T SASH1 Missense_Mutation p.H961Y 0.26 tolerated_low_confidence(0.41) benign(0) TCGA-AU-6004-01 6 151671196 151671196 G A AKAP12 Missense_Mutation p.S557N 0.11 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 6 152763292 152763292 C T SYNE1 Missense_Mutation p.R1309Q 0.20 benign(0.001) TCGA-AU-6004-01 6 157099403 157099405 CAG - ARID1B In_Frame_Del p.Q131del 0.18 TCGA-AU-6004-01 6 158505199 158505199 G A SYNJ2 Silent p.T1067T 0.31 TCGA-AU-6004-01 6 159653281 159653281 C T FNDC1 Silent p.P579P 0.21 TCGA-AU-6004-01 6 160106002 160106002 G A SOD2 Missense_Mutation p.T136M 0.17 deleterious(0.03) benign(0.336) TCGA-AU-6004-01 6 160238185 160238185 T C PNLDC1 Splice_Site p.X375_splice 0.22 TCGA-AU-6004-01 6 160471612 160471612 C A IGF2R Silent p.A874A 0.26 TCGA-AU-6004-01 6 160490950 160490950 G A IGF2R Missense_Mutation p.V1435M 0.07 tolerated(0.07) benign(0.072) TCGA-AU-6004-01 6 160831780 160831780 C T SLC22A3 Missense_Mutation p.R293C 0.23 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 6 160913965 160913965 G A LPAL2 RNA 0.22 TCGA-AU-6004-01 6 16327823 16327823 G - ATXN1 Frame_Shift_Del p.P240Hfs*37 0.19 TCGA-AU-6004-01 6 168430235 168430235 C T KIF25 5'UTR 0.11 TCGA-AU-6004-01 6 168459862 168459862 C T FRMD1 Missense_Mutation p.R450H 0.21 tolerated(0.22) benign(0.005) TCGA-AU-6004-01 6 170002339 170002339 C T WDR27 Silent p.A800A 0.25 TCGA-AU-6004-01 6 24566864 24566864 G T KIAA0319 Silent p.S751S 0.19 TCGA-AU-6004-01 6 24806689 24806689 C T FAM65B Missense_Mutation p.R1040Q 0.34 deleterious(0.03) possibly_damaging(0.49) TCGA-AU-6004-01 6 25538131 25538131 C T LRRC16A Nonsense_Mutation p.R706* 0.23 TCGA-AU-6004-01 6 26108015 26108015 T C HIST1H1T Missense_Mutation p.T103A 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-AU-6004-01 6 26124593 26124593 G T HIST1H2AC Missense_Mutation p.G45W 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AU-6004-01 6 26376883 26376884 - C BTN3A2 3'UTR 0.19 TCGA-AU-6004-01 6 26463599 26463599 G A BTN2A1 Silent p.A186A 0.22 TCGA-AU-6004-01 6 26468962 26468962 T - BTN2A1 3'UTR 0.21 TCGA-AU-6004-01 6 26638496 26638496 C T ZNF322 Missense_Mutation p.E96K 0.16 deleterious(0) probably_damaging(0.996) TCGA-AU-6004-01 6 27839710 27839710 C T HIST1H3I Silent p.A128A 0.10 TCGA-AU-6004-01 6 27840935 27840935 C T HIST1H4L 3'UTR 0.26 TCGA-AU-6004-01 6 28251935 28251935 A G PGBD1 Silent p.A115A 0.18 TCGA-AU-6004-01 6 28293921 28293921 G T ZSCAN31 3'UTR 0.17 TCGA-AU-6004-01 6 28541574 28541575 - A SCAND3 Frame_Shift_Ins p.V698Cfs*9 0.19 TCGA-AU-6004-01 6 30459028 30459028 G A HLA-E Missense_Mutation p.G242E 0.24 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-AU-6004-01 6 30520258 30520258 G A GNL1 Missense_Mutation p.T362I 0.14 deleterious(0) probably_damaging(0.978) TCGA-AU-6004-01 6 30653509 30653509 T C PPP1R18 Missense_Mutation p.Q96R 0.17 tolerated(0.4) benign(0.017) TCGA-AU-6004-01 6 30657966 30657967 - G NRM Frame_Shift_Ins p.L63Pfs*21 0.22 TCGA-AU-6004-01 6 30673672 30673672 T C MDC1 Silent p.S1096S 0.20 TCGA-AU-6004-01 6 30863251 30863251 C - DDR1 Frame_Shift_Del p.T531Hfs*122 0.32 TCGA-AU-6004-01 6 31239405 31239405 A C HLA-C Missense_Mutation p.L105R 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-AU-6004-01 6 31733382 31733382 C T VWA7 Missense_Mutation p.A889T 0.22 tolerated_low_confidence(0.09) benign(0.004) TCGA-AU-6004-01 6 31852666 31852666 A G EHMT2 Intron 0.34 TCGA-AU-6004-01 6 31938744 31938744 C T DXO Silent p.P179P 0.23 TCGA-AU-6004-01 6 32138380 32138380 T C AGPAT1 Intron 0.18 TCGA-AU-6004-01 6 32261769 32261770 - G C6orf10 Frame_Shift_Ins p.C228Lfs*18 0.12 TCGA-AU-6004-01 6 33289695 33289695 G A DAXX Missense_Mutation p.T3I 0.22 deleterious(0.02) benign(0.138) TCGA-AU-6004-01 6 33424606 33424606 C T ZBTB9 3'UTR 0.15 TCGA-AU-6004-01 6 33662721 33662721 C - ITPR3 Frame_Shift_Del p.R2604Gfs*30 0.22 TCGA-AU-6004-01 6 34949479 34949479 G A ANKS1A Missense_Mutation p.E150K 0.19 deleterious(0) probably_damaging(0.977) TCGA-AU-6004-01 6 35207576 35207576 C T SCUBE3 Missense_Mutation p.R293C 0.21 deleterious(0) probably_damaging(0.973) TCGA-AU-6004-01 6 35442926 35442926 C T TEAD3 Silent p.T401T 0.14 TCGA-AU-6004-01 6 40400491 40400491 C T LRFN2 Missense_Mutation p.R121Q 0.22 tolerated(0.14) benign(0.273) TCGA-AU-6004-01 6 41243764 41243764 T G TREM1 3'UTR 0.20 TCGA-AU-6004-01 6 43022100 43022100 C T MRPL2 Missense_Mutation p.R277H 0.21 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 6 43111213 43111213 C T PTK7 Silent p.I710I 0.29 TCGA-AU-6004-01 6 43220588 43220588 C T TTBK1 Missense_Mutation p.L74F 0.32 probably_damaging(1) TCGA-AU-6004-01 6 43472736 43472736 G A TJAP1 Missense_Mutation p.D273N 0.22 tolerated(0.19) benign(0.014) TCGA-AU-6004-01 6 45390355 45390355 C - RUNX2 Frame_Shift_Del p.S31Pfs*9 0.23 TCGA-AU-6004-01 6 50011297 50011297 T C DEFB112 Silent p.S111S 0.24 TCGA-AU-6004-01 6 50740541 50740541 T C TFAP2D Silent p.A441A 0.19 TCGA-AU-6004-01 6 52334208 52334208 A - EFHC1 Frame_Shift_Del p.D408Tfs*7 0.15 TCGA-AU-6004-01 6 53519096 53519096 T C KLHL31 Silent p.P325P 0.05 TCGA-AU-6004-01 6 53519759 53519759 T - KLHL31 Frame_Shift_Del p.D105Tfs*15 0.19 TCGA-AU-6004-01 6 56485020 56485020 T - DST Intron 0.19 TCGA-AU-6004-01 6 56485142 56485142 G A DST Intron 0.19 TCGA-AU-6004-01 6 6320851 6320851 C T F13A1 5'UTR 0.17 TCGA-AU-6004-01 6 70428910 70428910 G A LMBRD1 Missense_Mutation p.R234C 0.24 deleterious(0) probably_damaging(0.991) TCGA-AU-6004-01 6 72596755 72596755 C G RIMS1 Missense_Mutation p.P10R 0.26 tolerated_low_confidence(0.08) probably_damaging(0.969) TCGA-AU-6004-01 6 72596775 72596775 C - RIMS1 Frame_Shift_Del p.M19Cfs*7 0.17 TCGA-AU-6004-01 6 75833072 75833072 G - COL12A1 Frame_Shift_Del p.P2307Lfs*21 0.21 TCGA-AU-6004-01 6 75838098 75838099 - T COL12A1 Frame_Shift_Ins p.L2085Hfs*4 0.18 TCGA-AU-6004-01 6 75840675 75840675 C T COL12A1 Missense_Mutation p.R1987H 0.18 benign(0.002) TCGA-AU-6004-01 6 75865510 75865510 C T COL12A1 Missense_Mutation p.R1104Q 0.28 probably_damaging(0.958) TCGA-AU-6004-01 6 78172661 78172661 C T HTR1B Missense_Mutation p.A154T 0.25 deleterious(0) probably_damaging(0.953) TCGA-AU-6004-01 6 84350910 84350911 - A SNAP91 Frame_Shift_Ins p.E224* 0.15 TCGA-AU-6004-01 6 84644368 84644368 C T CYB5R4 Missense_Mutation p.T290M 0.05 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 6 88854074 88854074 C T CNR1 Missense_Mutation p.R307H 0.25 tolerated(0.08) benign(0.115) TCGA-AU-6004-01 6 96657993 96657993 G T FUT9 3'UTR 0.21 TCGA-AU-6004-01 6 99286527 99286527 T - POU3F2 3'UTR 0.15 TCGA-AU-6004-01 7 100479720 100479720 A G SRRT Missense_Mutation p.M149V 0.28 deleterious(0) benign(0.037) TCGA-AU-6004-01 7 102604046 102604046 G A FBXL13 Missense_Mutation p.R220C 0.15 deleterious(0.04) benign(0.42) TCGA-AU-6004-01 7 102854486 102854486 A G DPY19L2P2 RNA 0.05 TCGA-AU-6004-01 7 103969536 103969536 C T LHFPL3 Silent p.G103G 0.07 TCGA-AU-6004-01 7 104747108 104747108 G A KMT2E Silent p.T912T 0.26 TCGA-AU-6004-01 7 104909267 104909267 C T SRPK2 Intron 0.22 TCGA-AU-6004-01 7 107115558 107115558 T - GPR22 Frame_Shift_Del p.L353* 0.18 TCGA-AU-6004-01 7 115750809 115750809 G T TFEC Missense_Mutation p.P51T 0.10 deleterious(0.01) benign(0.115) TCGA-AU-6004-01 7 121753195 121753195 G A AASS Missense_Mutation p.L419F 0.19 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 7 122341990 122341990 C T RNF148 Missense_Mutation p.R272H 0.21 deleterious(0) probably_damaging(0.91) TCGA-AU-6004-01 7 127569290 127569290 G A SND1 Missense_Mutation p.R526H 0.24 deleterious(0) probably_damaging(0.919) TCGA-AU-6004-01 7 128478755 128478755 C T FLNC Missense_Mutation p.R437C 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-AU-6004-01 7 128498142 128498142 C A FLNC Silent p.R2621R 0.10 TCGA-AU-6004-01 7 128505584 128505584 C A ATP6V1F Silent p.S132S 0.21 TCGA-AU-6004-01 7 129668768 129668768 G T ZC3HC1 Missense_Mutation p.L199I 0.22 tolerated(0.14) benign(0.391) TCGA-AU-6004-01 7 133979783 133979783 G T SLC35B4 Silent p.S266S 0.16 TCGA-AU-6004-01 7 135376960 135376960 C A SLC13A4 Intron 0.21 TCGA-AU-6004-01 7 135390932 135390932 G A SLC13A4 Missense_Mutation p.A161V 0.21 tolerated(0.05) benign(0.021) TCGA-AU-6004-01 7 135613319 135613319 G A MTPN 3'UTR 0.27 TCGA-AU-6004-01 7 138440471 138440471 A G ATP6V0A4 Missense_Mutation p.L260S 0.22 tolerated(0.32) benign(0.113) TCGA-AU-6004-01 7 139416542 139416542 C T HIPK2 Missense_Mutation p.A98T 0.26 deleterious(0.01) benign(0.016) TCGA-AU-6004-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-AU-6004-01 7 141673000 141673001 - A TAS2R38 Frame_Shift_Ins p.S164* 0.21 TCGA-AU-6004-01 7 142991837 142991837 G A CASP2 Missense_Mutation p.V240I 0.22 deleterious(0.05) benign(0.049) TCGA-AU-6004-01 7 146818108 146818108 A G CNTNAP2 Silent p.S264S 0.32 TCGA-AU-6004-01 7 149545311 149545311 C - ZNF862 Frame_Shift_Del p.P245Qfs*21 0.18 TCGA-AU-6004-01 7 150700626 150700626 T - NOS3 Intron 0.20 TCGA-AU-6004-01 7 150746117 150746117 G A ASIC3 Missense_Mutation p.V49M 0.44 deleterious(0.05) benign(0.091) TCGA-AU-6004-01 7 151478502 151478502 C T PRKAG2 Missense_Mutation p.G68S 0.26 tolerated_low_confidence(0.51) benign(0) TCGA-AU-6004-01 7 154593172 154593172 G T DPP6 Missense_Mutation p.Q469H 0.25 deleterious(0.02) probably_damaging(0.909) TCGA-AU-6004-01 7 155504076 155504076 C A RBM33 Silent p.P376P 0.32 TCGA-AU-6004-01 7 156798322 156798322 G T MNX1 Missense_Mutation p.D366E 0.08 tolerated_low_confidence(0.36) possibly_damaging(0.522) TCGA-AU-6004-01 7 157023821 157023821 G T UBE3C Missense_Mutation p.G761C 0.23 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 7 20438548 20438548 C T ITGB8 Silent p.T404T 0.19 TCGA-AU-6004-01 7 20449575 20449575 T C ITGB8 Silent p.D755D 0.20 TCGA-AU-6004-01 7 21920426 21920426 G A DNAH11 Missense_Mutation p.G4108D 0.27 probably_damaging(1) TCGA-AU-6004-01 7 23561888 23561888 A - TRA2A Intron 0.28 TCGA-AU-6004-01 7 29606238 29606240 AGG - PRR15 In_Frame_Del p.E99del 0.33 TCGA-AU-6004-01 7 35872497 35872497 G A SEPT7 Silent p.T53T 0.16 TCGA-AU-6004-01 7 38796519 38796519 G A VPS41 Silent p.D538D 0.19 TCGA-AU-6004-01 7 4056977 4056977 G A SDK1 Silent p.L865L 0.09 TCGA-AU-6004-01 7 4308164 4308164 C T SDK1 3'UTR 0.21 TCGA-AU-6004-01 7 44187320 44187320 G A GCK Silent p.G265G 0.26 TCGA-AU-6004-01 7 45113980 45113980 G A CCM2 Missense_Mutation p.G364R 0.25 tolerated(0.06) possibly_damaging(0.652) TCGA-AU-6004-01 7 45776459 45776459 A G SEPT7P2 RNA 0.21 TCGA-AU-6004-01 7 48027010 48027010 T C SUN3 Missense_Mutation p.N331D 0.31 deleterious(0.04) benign(0.006) TCGA-AU-6004-01 7 4874833 4874833 G A RADIL Missense_Mutation p.T274M 0.21 deleterious(0.04) probably_damaging(0.96) TCGA-AU-6004-01 7 51258724 51258724 G A COBL Missense_Mutation p.R170C 0.25 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 7 62758720 62758720 C T ZNF733P RNA 0.11 TCGA-AU-6004-01 7 70800680 70800680 T A WBSCR17 Missense_Mutation p.I128N 0.30 deleterious(0) probably_damaging(0.979) TCGA-AU-6004-01 7 72419177 72419177 C T POM121 3'UTR 0.10 TCGA-AU-6004-01 7 73731947 73731947 C A CLIP2 Missense_Mutation p.S24Y 0.19 deleterious(0.02) possibly_damaging(0.838) TCGA-AU-6004-01 7 74199574 74199574 C T NCF1 Silent p.D243D 0.18 TCGA-AU-6004-01 7 75024603 75024603 C T TRIM73 5'Flank 0.20 TCGA-AU-6004-01 7 76121513 76121513 C A DTX2 Missense_Mutation p.P318T 0.20 tolerated(0.1) benign(0.371) TCGA-AU-6004-01 7 82582944 82582944 T - PCLO Frame_Shift_Del p.K2442Sfs*2 0.22 TCGA-AU-6004-01 7 82996848 82996848 T - SEMA3E 3'UTR 0.17 TCGA-AU-6004-01 7 84628908 84628908 C T SEMA3D Missense_Mutation p.D728N 0.21 tolerated(0.05) probably_damaging(0.913) TCGA-AU-6004-01 7 86416304 86416304 C T GRM3 Missense_Mutation p.A399V 0.24 deleterious(0.02) possibly_damaging(0.702) TCGA-AU-6004-01 7 87195486 87195486 A - ABCB1 Frame_Shift_Del p.F201Sfs*5 0.18 TCGA-AU-6004-01 7 92838018 92838018 C A HEPACAM2 Missense_Mutation p.G296V 0.25 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 7 98256481 98256481 C T NPTX2 Missense_Mutation p.A298V 0.24 tolerated(0.1) possibly_damaging(0.901) TCGA-AU-6004-01 7 98957173 98957173 T C ARPC1A Silent p.H265H 0.24 TCGA-AU-6004-01 7 99950636 99950636 G A PILRB 5'UTR 0.31 TCGA-AU-6004-01 7 99951100 99951100 C T PILRB 5'UTR 0.25 TCGA-AU-6004-01 8 10285814 10285814 A - MSRA Frame_Shift_Del p.K235Nfs*14 0.35 TCGA-AU-6004-01 8 103266520 103266520 T - UBR5 3'UTR 0.28 TCGA-AU-6004-01 8 103572709 103572709 C A ODF1 Missense_Mutation p.A117D 0.20 tolerated_low_confidence(0.38) possibly_damaging(0.806) TCGA-AU-6004-01 8 105368481 105368481 G A DCSTAMP 3'UTR 0.23 TCGA-AU-6004-01 8 106431460 106431460 G T ZFPM2 Missense_Mutation p.E43D 0.04 tolerated(0.25) probably_damaging(0.99) TCGA-AU-6004-01 8 117950510 117950511 AG - AARD Frame_Shift_Del p.R12Nfs*11 0.31 TCGA-AU-6004-01 8 123964016 123964016 A T ZHX2 Missense_Mutation p.N89I 0.41 deleterious(0) possibly_damaging(0.486) TCGA-AU-6004-01 8 125464282 125464282 A - TRMT12 Frame_Shift_Del p.N373Mfs*53 0.30 TCGA-AU-6004-01 8 12586535 12586535 C T LONRF1 Missense_Mutation p.V629M 0.31 deleterious(0) probably_damaging(0.991) TCGA-AU-6004-01 8 13251147 13251147 C T DLC1 Missense_Mutation p.R410Q 0.33 tolerated_low_confidence(1) benign(0) TCGA-AU-6004-01 8 134107314 134107314 C T TG Silent p.A2422A 0.34 TCGA-AU-6004-01 8 134237718 134237718 G - WISP1 Frame_Shift_Del p.V234Sfs*50 0.34 TCGA-AU-6004-01 8 134477132 134477132 T C ST3GAL1 Missense_Mutation p.Y191C 0.06 probably_damaging(1) TCGA-AU-6004-01 8 139696691 139696691 G T COL22A1 Missense_Mutation p.L997I 0.33 unknown(0) TCGA-AU-6004-01 8 141545606 141545606 G A AGO2 Silent p.T744T 0.36 TCGA-AU-6004-01 8 142228974 142228974 C A SLC45A4 Missense_Mutation p.E204D 0.42 deleterious(0) probably_damaging(0.957) TCGA-AU-6004-01 8 143695326 143695326 C T ARC Missense_Mutation p.A103T 0.06 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-AU-6004-01 8 145112615 145112615 C T OPLAH Silent p.G386G 0.05 TCGA-AU-6004-01 8 145692659 145692659 G - KIFC2 Frame_Shift_Del p.R137Gfs*73 0.28 TCGA-AU-6004-01 8 145731723 145731723 G T GPT Missense_Mutation p.Q355H 0.26 deleterious(0.01) possibly_damaging(0.796) TCGA-AU-6004-01 8 146156564 146156564 G A ZNF16 Nonsense_Mutation p.R537* 0.20 TCGA-AU-6004-01 8 17612584 17612584 C T MTUS1 Missense_Mutation p.A245T 0.41 tolerated(0.15) benign(0.311) TCGA-AU-6004-01 8 1998936 1998936 C A MYOM2 Missense_Mutation p.S19Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 8 2017467 2017467 G A MYOM2 Missense_Mutation p.A242T 0.09 deleterious(0) possibly_damaging(0.907) TCGA-AU-6004-01 8 23056859 23056860 CA - TNFRSF10A Frame_Shift_Del p.E312Afs*32 0.17 TCGA-AU-6004-01 8 26149253 26149253 C - PPP2R2A 5'Flank 0.31 TCGA-AU-6004-01 8 26221272 26221272 T - PPP2R2A Frame_Shift_Del p.S292Pfs*10 0.42 TCGA-AU-6004-01 8 26510823 26510823 G A DPYSL2 Missense_Mutation p.V513I 0.17 tolerated(0.48) benign(0.001) TCGA-AU-6004-01 8 27455705 27455706 - G CLU 3'UTR 0.27 TCGA-AU-6004-01 8 28929236 28929236 C T KIF13B Missense_Mutation p.V1707I 0.18 deleterious(0.04) probably_damaging(0.981) TCGA-AU-6004-01 8 3000077 3000077 C T CSMD1 Missense_Mutation p.A2051T 0.37 benign(0.003) TCGA-AU-6004-01 8 30694759 30694759 G A TEX15 Missense_Mutation p.T2631I 0.21 tolerated(0.16) benign(0.039) TCGA-AU-6004-01 8 30890051 30890051 C T PURG Missense_Mutation p.R83H 0.11 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 8 36768518 36768518 C - KCNU1 Frame_Shift_Del p.P803Hfs*11 0.33 TCGA-AU-6004-01 8 37720428 37720428 T - RAB11FIP1 Frame_Shift_Del p.A1280Qfs*59 0.10 TCGA-AU-6004-01 8 37985959 37985959 G A ASH2L Missense_Mutation p.G439D 0.22 deleterious(0) probably_damaging(0.965) TCGA-AU-6004-01 8 41655076 41655076 C - ANK1 Intron 0.20 TCGA-AU-6004-01 8 43218314 43218314 A G AC022616.1 3'Flank 0.36 TCGA-AU-6004-01 8 48761806 48761807 AG - PRKDC Frame_Shift_Del p.C2396Sfs*30 0.23 TCGA-AU-6004-01 8 52321235 52321235 C T PXDNL Silent p.T983T 0.15 TCGA-AU-6004-01 8 59058939 59058939 C T FAM110B Silent p.A50A 0.21 TCGA-AU-6004-01 8 61778301 61778301 G A CHD7 Missense_Mutation p.E2935K 0.18 benign(0.121) TCGA-AU-6004-01 8 6615051 6615051 C T AGPAT5 3'UTR 0.23 TCGA-AU-6004-01 8 71053600 71053600 C T NCOA2 Missense_Mutation p.M949I 0.20 tolerated(0.43) benign(0.002) TCGA-AU-6004-01 8 71487182 71487182 T - TRAM1 Frame_Shift_Del p.E371Rfs*8 0.11 TCGA-AU-6004-01 8 73848578 73848578 C T KCNB2 Missense_Mutation p.R330W 0.35 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 8 77617065 77617065 A - ZFHX4 Frame_Shift_Del p.N249Tfs*30 0.15 TCGA-AU-6004-01 8 8185875 8185875 C G SGK223 Missense_Mutation p.G806A 0.25 benign(0.079) TCGA-AU-6004-01 8 87060926 87060926 C T PSKH2 Missense_Mutation p.R308H 0.15 deleterious(0.04) possibly_damaging(0.843) TCGA-AU-6004-01 8 87151813 87151813 G A ATP6V0D2 Missense_Mutation p.A144T 0.19 deleterious(0.04) possibly_damaging(0.633) TCGA-AU-6004-01 8 95531215 95531215 C A KIAA1429 Missense_Mutation p.L837F 0.09 tolerated(0.2) possibly_damaging(0.865) TCGA-AU-6004-01 9 101824326 101824326 T C COL15A1 Missense_Mutation p.L1159P 0.22 deleterious(0) probably_damaging(0.998) TCGA-AU-6004-01 9 104316389 104316389 T C RNF20 Splice_Site p.X673_splice 0.31 TCGA-AU-6004-01 9 104356506 104356506 T C PPP3R2 3'UTR 0.25 TCGA-AU-6004-01 9 107571779 107571779 G A ABCA1 Silent p.F1414F 0.19 TCGA-AU-6004-01 9 114289700 114289700 A G ZNF483 Missense_Mutation p.K9E 0.17 tolerated(0.14) benign(0.292) TCGA-AU-6004-01 9 115579992 115579992 G A SNX30 Missense_Mutation p.R119Q 0.26 deleterious(0) probably_damaging(0.986) TCGA-AU-6004-01 9 115806099 115806099 T C ZFP37 Missense_Mutation p.T267A 0.03 tolerated(0.11) benign(0.006) TCGA-AU-6004-01 9 116053805 116053805 G A PRPF4 Silent p.T478T 0.26 TCGA-AU-6004-01 9 116655 116655 C T FOXD4 3'UTR 0.22 TCGA-AU-6004-01 9 116811836 116811836 G A ZNF618 Missense_Mutation p.E659K 0.24 deleterious(0.01) possibly_damaging(0.843) TCGA-AU-6004-01 9 116930119 116930119 G A COL27A1 Missense_Mutation p.G95D 0.19 unknown(0) TCGA-AU-6004-01 9 123631959 123631959 G A PHF19 Intron 0.23 TCGA-AU-6004-01 9 125673026 125673026 A G ZBTB6 3'UTR 0.15 TCGA-AU-6004-01 9 130206995 130206995 G T ZNF79 Missense_Mutation p.G339V 0.24 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 9 130829197 130829197 G A NAIF1 Missense_Mutation p.R62C 0.39 deleterious(0.04) possibly_damaging(0.828) TCGA-AU-6004-01 9 131036174 131036174 A G GOLGA2 Silent p.S54S 0.21 TCGA-AU-6004-01 9 131079488 131079488 C T TRUB2 Missense_Mutation p.A87T 0.32 tolerated(1) benign(0) TCGA-AU-6004-01 9 13115254 13115254 C A MPDZ Intron 0.27 TCGA-AU-6004-01 9 131154941 131154941 C T URM1 3'Flank 0.18 TCGA-AU-6004-01 9 131588395 131588395 C T C9orf114 Missense_Mutation p.R182H 0.29 deleterious(0) probably_damaging(0.984) TCGA-AU-6004-01 9 13217183 13217183 T - MPDZ Frame_Shift_Del p.K399Nfs*9 0.09 TCGA-AU-6004-01 9 132382096 132382096 C T C9orf50 Silent p.P174P 0.12 TCGA-AU-6004-01 9 132630548 132630548 C T USP20 Nonsense_Mutation p.R319* 0.30 TCGA-AU-6004-01 9 134454901 134454901 G A RAPGEF1 Missense_Mutation p.R1091W 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AU-6004-01 9 134458080 134458080 C T RAPGEF1 Missense_Mutation p.E974K 0.15 deleterious(0) possibly_damaging(0.566) TCGA-AU-6004-01 9 135538051 135538051 G A DDX31 Missense_Mutation p.A141V 0.27 tolerated(0.19) benign(0.011) TCGA-AU-6004-01 9 135947054 135947054 C - CEL Frame_Shift_Del p.P727Lfs*34 0.24 TCGA-AU-6004-01 9 136029051 136029051 G C GBGT1 Silent p.L319L 0.18 TCGA-AU-6004-01 9 136320650 136320650 C T ADAMTS13 Missense_Mutation p.R1165W 0.29 tolerated(0.1) benign(0.003) TCGA-AU-6004-01 9 137591812 137591812 G A COL5A1 Missense_Mutation p.S112N 0.22 benign(0.345) TCGA-AU-6004-01 9 137646155 137646155 G A COL5A1 Missense_Mutation p.G604R 0.17 probably_damaging(1) TCGA-AU-6004-01 9 139250965 139250965 C T GPSM1 Missense_Mutation p.P595L 0.34 deleterious(0.04) probably_damaging(1) TCGA-AU-6004-01 9 139264814 139264814 G T CARD9 Missense_Mutation p.Q295K 0.23 deleterious(0.01) possibly_damaging(0.546) TCGA-AU-6004-01 9 139357510 139357510 G T SEC16A Silent p.P1574P 0.22 TCGA-AU-6004-01 9 139740933 139740933 C T C9orf172 Silent p.C689C 0.25 TCGA-AU-6004-01 9 139750817 139750817 G A MAMDC4 Intron 0.22 TCGA-AU-6004-01 9 140322513 140322513 C T NOXA1 Silent p.L97L 0.21 TCGA-AU-6004-01 9 140972650 140972650 G A CACNA1B Silent p.E1678E 0.23 TCGA-AU-6004-01 9 15171900 15171900 A - TTC39B 3'UTR 0.37 TCGA-AU-6004-01 9 17135270 17135271 - G CNTLN Frame_Shift_Ins p.A72Gfs*51 0.16 TCGA-AU-6004-01 9 312114 312114 G A DOCK8 Missense_Mutation p.R230Q 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-AU-6004-01 9 35045088 35045088 A C C9orf131 Missense_Mutation p.D821A 0.09 tolerated(0.53) benign(0.001) TCGA-AU-6004-01 9 35810270 35810272 AGA - SPAG8 In_Frame_Del p.F412del 0.09 TCGA-AU-6004-01 9 36882085 36882085 T C PAX5 Missense_Mutation p.T310A 0.29 deleterious(0.03) benign(0.05) TCGA-AU-6004-01 9 4604257 4604257 A G SPATA6L Missense_Mutation p.S310P 0.21 tolerated(0.14) possibly_damaging(0.82) TCGA-AU-6004-01 9 5805061 5805061 A - ERMP1 Frame_Shift_Del p.L627Wfs*6 0.18 TCGA-AU-6004-01 9 6013855 6013855 C T RANBP6 Missense_Mutation p.A585T 0.24 deleterious(0.01) possibly_damaging(0.887) TCGA-AU-6004-01 9 6481759 6481759 G - UHRF2 Frame_Shift_Del p.G427Afs*39 0.16 TCGA-AU-6004-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.07 deleterious(0.01) possibly_damaging(0.573) TCGA-AU-6004-01 9 73461310 73461310 A G TRPM3 Silent p.T220T 0.07 TCGA-AU-6004-01 9 738459 738459 G A KANK1 Missense_Mutation p.V1170M 0.24 deleterious(0) probably_damaging(0.99) TCGA-AU-6004-01 9 80046341 80046341 G A GNA14 Silent p.I163I 0.22 TCGA-AU-6004-01 9 86280030 86280030 A G UBQLN1 Missense_Mutation p.S455P 0.25 deleterious(0.02) probably_damaging(0.958) TCGA-AU-6004-01 9 87570246 87570246 G A NTRK2 Silent p.T662T 0.29 TCGA-AU-6004-01 9 91605866 91605866 G A C9orf47 5'UTR 0.25 TCGA-AU-6004-01 9 93976628 93976628 T G AUH 3'UTR 0.21 TCGA-AU-6004-01 9 94812351 94812351 T C SPTLC1 Splice_Site p.X261_splice 0.18 TCGA-AU-6004-01 9 95063896 95063896 C T NOL8 Missense_Mutation p.A1038T 0.04 tolerated(0.28) benign(0.023) TCGA-AU-6004-01 9 95738900 95738900 C - FGD3 Frame_Shift_Del p.Q123Rfs*51 0.21 TCGA-AU-6004-01 9 96320200 96320200 C T FAM120A Missense_Mutation p.P859L 0.23 deleterious(0.01) benign(0.315) TCGA-AU-6004-01 9 96859788 96859788 G A PTPDC1 Missense_Mutation p.A312T 0.11 tolerated(0.3) benign(0.034) TCGA-AU-6004-01 X 101572141 101572141 G T NXF2 Intron 0.11 TCGA-AU-6004-01 X 101911894 101911894 C A GPRASP1 Missense_Mutation p.P1018H 0.22 deleterious(0) probably_damaging(1) TCGA-AU-6004-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.19 TCGA-AU-6004-01 X 105168791 105168791 G T NRK Missense_Mutation p.S1028I 0.25 tolerated(0.08) possibly_damaging(0.628) TCGA-AU-6004-01 X 107334816 107334816 G A PSMD10 5'UTR 0.32 TCGA-AU-6004-01 X 118540438 118540439 CA - SLC25A43 Frame_Shift_Del p.T98Rfs*2 0.19 TCGA-AU-6004-01 X 120181925 120181925 G C GLUD2 Missense_Mutation p.W129C 0.22 deleterious(0.01) possibly_damaging(0.831) TCGA-AU-6004-01 X 125299120 125299120 C T DCAF12L2 Missense_Mutation p.R263H 0.28 tolerated(0.59) benign(0.005) TCGA-AU-6004-01 X 12736253 12736253 A - FRMPD4 Frame_Shift_Del p.S1105Vfs*3 0.24 TCGA-AU-6004-01 X 129147051 129147051 C T BCORL1 Silent p.Y101Y 0.22 TCGA-AU-6004-01 X 129168638 129168638 G A BCORL1 Intron 0.23 TCGA-AU-6004-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.29 TCGA-AU-6004-01 X 129629759 129629759 C T RP1-274L7.1 Intron 0.08 TCGA-AU-6004-01 X 131203605 131203605 A - MST4 Frame_Shift_Del p.N234Tfs*22 0.21 TCGA-AU-6004-01 X 133988128 133988128 C G FAM122C Missense_Mutation p.F150L 0.22 tolerated(0.81) benign(0.139) TCGA-AU-6004-01 X 138644282 138644282 C T F9 3'UTR 0.23 TCGA-AU-6004-01 X 142596705 142596705 G A SPANXN3 Missense_Mutation p.S122L 0.21 deleterious_low_confidence(0) benign(0.017) TCGA-AU-6004-01 X 148037757 148037757 C T AFF2 Silent p.L728L 0.25 TCGA-AU-6004-01 X 151900594 151900594 G - MAGEA12 Frame_Shift_Del p.T70Pfs*38 0.19 TCGA-AU-6004-01 X 152225553 152225553 C T PNMA3 Silent p.G47G 0.23 TCGA-AU-6004-01 X 152710631 152710631 C T TREX2 Silent p.A86A 0.21 TCGA-AU-6004-01 X 153032931 153032931 G A PLXNB3 Missense_Mutation p.E240K 0.23 deleterious(0) probably_damaging(0.999) TCGA-AU-6004-01 X 153042728 153042728 G A PLXNB3 Missense_Mutation p.E1688K 0.23 deleterious(0) probably_damaging(0.937) TCGA-AU-6004-01 X 153135086 153135086 G A L1CAM Missense_Mutation p.R386C 0.23 deleterious(0.05) possibly_damaging(0.67) TCGA-AU-6004-01 X 153296860 153296860 G A MECP2 Missense_Mutation p.A152V 0.21 deleterious(0.02) possibly_damaging(0.76) TCGA-AU-6004-01 X 153688565 153688565 G - PLXNA3 Frame_Shift_Del p.A17Pfs*12 0.27 TCGA-AU-6004-01 X 155003517 155003518 - A SPRY3 5'UTR 0.21 TCGA-AU-6004-01 X 155005008 155005008 C A SPRY3 3'UTR 0.10 TCGA-AU-6004-01 X 155009151 155009151 A T SPRY3 3'UTR 0.26 TCGA-AU-6004-01 X 15589747 15589747 A G ACE2 Missense_Mutation p.Y613H 0.11 deleterious(0.05) possibly_damaging(0.509) TCGA-AU-6004-01 X 21675046 21675046 C - KLHL34 Frame_Shift_Del p.R288Afs*7 0.34 TCGA-AU-6004-01 X 2407144 2407145 - G ZBED1 Frame_Shift_Ins p.P540Afs*80 0.23 TCGA-AU-6004-01 X 25033813 25033813 G A ARX Silent p.P14P 0.23 TCGA-AU-6004-01 X 29301320 29301320 C T IL1RAPL1 Silent p.Y116Y 0.22 TCGA-AU-6004-01 X 30326800 30326800 C T NR0B1 Silent p.P227P 0.29 TCGA-AU-6004-01 X 322293 322293 C T PPP2R3B Silent p.P119P 0.24 TCGA-AU-6004-01 X 32429983 32429983 C A DMD Missense_Mutation p.Q1373H 0.18 possibly_damaging(0.763) TCGA-AU-6004-01 X 35820622 35820622 A G MAGEB16 Silent p.S103S 0.10 TCGA-AU-6004-01 X 38665251 38665254 TTTC - MID1IP1 3'UTR 0.21 TCGA-AU-6004-01 X 46387831 46387831 G A ZNF674 Silent p.D64D 0.19 TCGA-AU-6004-01 X 48558950 48558950 C T SUV39H1 Missense_Mutation p.R212W 0.09 deleterious(0) benign(0.16) TCGA-AU-6004-01 X 49850648 49850649 - GCA CLCN5 In_Frame_Ins p.A319dup 0.16 TCGA-AU-6004-01 X 49958422 49958422 G T AKAP4 Missense_Mutation p.D314E 0.20 tolerated(0.23) benign(0.022) TCGA-AU-6004-01 X 53622234 53622234 G A HUWE1 Missense_Mutation p.A1098V 0.19 probably_damaging(0.993) TCGA-AU-6004-01 X 54224721 54224722 - A WNK3 3'UTR 0.16 TCGA-AU-6004-01 X 57934426 57934426 C T ZXDA 3'UTR 0.21 TCGA-AU-6004-01 X 57936949 57936949 A G ZXDA 5'UTR 0.25 TCGA-AU-6004-01 X 62885826 62885826 G A ARHGEF9 Silent p.Y332Y 0.26 TCGA-AU-6004-01 X 63412647 63412648 - A AMER1 Frame_Shift_Ins p.S174* 0.16 TCGA-AU-6004-01 X 66905872 66905872 G A AR Missense_Mutation p.A597T 0.21 deleterious(0) probably_damaging(0.991) TCGA-AU-6004-01 X 70469365 70469365 G A ZMYM3 Silent p.H472H 0.23 TCGA-AU-6004-01 X 70602865 70602865 C T TAF1 Missense_Mutation p.R620W 0.22 tolerated(0.1) benign(0.03) TCGA-AU-6004-01 X 75649986 75649986 G A MAGEE1 Missense_Mutation p.A555T 0.24 tolerated(0.27) benign(0.055) TCGA-AU-6004-01 X 77245177 77245177 T A ATP7A Missense_Mutation p.S353R 0.28 tolerated(0.32) benign(0.04) TCGA-AU-6004-01 X 77912935 77912935 C T ZCCHC5 Missense_Mutation p.C328Y 0.26 tolerated(1) benign(0.025) TCGA-AU-6004-01 X 78012026 78012026 C T LPAR4 3'UTR 0.27 TCGA-AU-6004-01 X 84510386 84510386 A G ZNF711 Silent p.A67A 0.18 TCGA-AU-6004-01 X 85404020 85404020 C T DACH2 Silent p.R132R 0.24 TCGA-AU-6004-01 X 91873950 91873950 G C PCDH11X 3'UTR 0.22 TCGA-AU-6004-01 X 9862656 9862656 C A SHROOM2 Silent p.L236L 0.26 TCGA-AY-5543-01 10 103291060 103291060 A C BTRC Silent p.A270A 0.32 TCGA-AY-5543-01 10 14563131 14563131 G A FAM107B 3'UTR 0.41 TCGA-AY-5543-01 10 24498118 24498118 A G KIAA1217 5'UTR 0.42 TCGA-AY-5543-01 10 88492873 88492873 G T LDB3 3'UTR 0.33 TCGA-AY-5543-01 10 97772450 97772450 T A CC2D2B Silent p.L94L 0.17 TCGA-AY-5543-01 11 117335711 117335711 C T DSCAML1 Missense_Mutation p.R1131Q 0.35 tolerated(0.07) benign(0.215) TCGA-AY-5543-01 11 11974328 11974328 G A USP47 Silent p.L1140L 0.34 TCGA-AY-5543-01 11 17803296 17803296 C T KCNC1 3'UTR 0.46 TCGA-AY-5543-01 11 30032882 30032882 C A KCNA4 Silent p.L448L 0.36 TCGA-AY-5543-01 11 46388918 46388918 A G DGKZ Missense_Mutation p.E269G 0.33 deleterious(0.04) benign(0.097) TCGA-AY-5543-01 11 4661859 4661859 C A OR51D1 Missense_Mutation p.P280H 0.32 tolerated(0.7) benign(0.004) TCGA-AY-5543-01 11 61048545 61048545 C T VWCE Missense_Mutation p.R317H 0.32 tolerated(0.74) benign(0.003) TCGA-AY-5543-01 11 640681 640681 G A DRD4 3'UTR 0.75 TCGA-AY-5543-01 11 66333182 66333182 G A CTSF Silent p.G335G 0.38 TCGA-AY-5543-01 11 75298129 75298129 G A MAP6 Missense_Mutation p.T806M 0.32 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-AY-5543-01 12 118582545 118582545 G A PEBP1 Silent p.T167T 0.31 TCGA-AY-5543-01 12 121435656 121435656 C T HNF1A Intron 0.35 TCGA-AY-5543-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.34 deleterious(0.04) possibly_damaging(0.506) TCGA-AY-5543-01 12 49398944 49398944 T G PRKAG1 Missense_Mutation p.Q114P 0.38 tolerated(0.11) benign(0.029) TCGA-AY-5543-01 12 50189860 50189860 G A NCKAP5L Missense_Mutation p.P595S 0.41 tolerated(0.48) benign(0.004) TCGA-AY-5543-01 12 5024098 5024098 T - KCNA1 3'UTR 0.27 TCGA-AY-5543-01 12 51072560 51072560 C G DIP2B Missense_Mutation p.L339V 0.42 deleterious(0.01) benign(0.141) TCGA-AY-5543-01 13 22245934 22245934 T C FGF9 5'UTR 0.59 TCGA-AY-5543-01 13 39265079 39265079 G A FREM2 Missense_Mutation p.V1200M 0.47 deleterious(0) probably_damaging(0.993) TCGA-AY-5543-01 13 73349373 73349373 C A DIS3 Missense_Mutation p.E321D 0.13 tolerated(0.55) benign(0.002) TCGA-AY-5543-01 13 75936629 75936629 G A TBC1D4 Silent p.L205L 0.22 TCGA-AY-5543-01 14 23075356 23075356 G A ABHD4 Silent p.P223P 0.61 TCGA-AY-5543-01 14 50472596 50472596 C A C14orf182 5'UTR 0.55 TCGA-AY-5543-01 15 39544495 39544495 A G C15orf54 Silent p.R53R 0.14 TCGA-AY-5543-01 15 45059514 45059514 C T TRIM69 Silent p.D349D 0.53 TCGA-AY-5543-01 16 1271756 1271756 C T TPSG1 3'UTR 0.39 TCGA-AY-5543-01 16 23847617 23847617 G A PRKCB Missense_Mutation p.A41T 0.44 deleterious(0.02) probably_damaging(0.985) TCGA-AY-5543-01 16 30205838 30205838 A G SULT1A3 5'Flank 0.25 TCGA-AY-5543-01 16 30732257 30732257 C G SRCAP Missense_Mutation p.L1071V 0.27 unknown(0) TCGA-AY-5543-01 16 50250081 50250081 C T PAPD5 Missense_Mutation p.S287L 0.37 deleterious(0) possibly_damaging(0.833) TCGA-AY-5543-01 16 56485451 56485451 A G OGFOD1 5'UTR 0.17 TCGA-AY-5543-01 16 57608787 57608787 G A GPR114 Silent p.T423T 0.36 TCGA-AY-5543-01 16 90072787 90072787 C G DBNDD1 Missense_Mutation p.V165L 0.39 tolerated_low_confidence(0.15) benign(0.045) TCGA-AY-5543-01 17 2235486 2235486 G A TSR1 Silent p.P491P 0.56 TCGA-AY-5543-01 17 35470057 35470057 G A ACACA Missense_Mutation p.R2140W 0.39 deleterious(0.01) probably_damaging(0.931) TCGA-AY-5543-01 17 4576312 4576312 C T PELP1 Silent p.S658S 0.52 TCGA-AY-5543-01 17 46262165 46262165 G A SKAP1 Missense_Mutation p.R163W 0.35 deleterious(0) probably_damaging(0.976) TCGA-AY-5543-01 17 51901555 51901555 C T KIF2B Silent p.V387V 0.29 TCGA-AY-5543-01 17 56404079 56404079 G A BZRAP1 Missense_Mutation p.R136C 0.28 tolerated(0.09) benign(0.038) TCGA-AY-5543-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.55 TCGA-AY-5543-01 17 77756007 77756007 C T CBX2 Intron 0.36 TCGA-AY-5543-01 17 7911305 7911305 C T GUCY2D Silent p.S541S 0.52 TCGA-AY-5543-01 17 79639549 79639549 C T CCDC137 Missense_Mutation p.R229W 0.46 deleterious(0) probably_damaging(0.928) TCGA-AY-5543-01 18 54339862 54339862 A T WDR7 Missense_Mutation p.H39L 0.10 deleterious(0) probably_damaging(0.948) TCGA-AY-5543-01 18 56057906 56057906 G A NEDD4L Missense_Mutation p.R895H 0.59 deleterious(0) probably_damaging(0.988) TCGA-AY-5543-01 19 13319778 13319778 G A CACNA1A Missense_Mutation p.P2191L 0.10 benign(0.005) TCGA-AY-5543-01 19 22272030 22272030 G A ZNF257 Missense_Mutation p.G493D 0.09 tolerated(0.05) possibly_damaging(0.831) TCGA-AY-5543-01 19 31038872 31038872 G A ZNF536 Silent p.P782P 0.30 TCGA-AY-5543-01 19 31768987 31768987 G A TSHZ3 Missense_Mutation p.T571M 0.34 tolerated(0.1) benign(0.186) TCGA-AY-5543-01 19 39660206 39660206 A G PAK4 Missense_Mutation p.R5G 0.26 deleterious(0) benign(0.022) TCGA-AY-5543-01 19 41255672 41255672 T A C19orf54 Missense_Mutation p.I13F 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-AY-5543-01 19 41860455 41860455 G A B9D2 3'UTR 0.38 TCGA-AY-5543-01 19 42353008 42353008 A G DMRTC2 Missense_Mutation p.Y198C 0.08 tolerated(0.5) benign(0) TCGA-AY-5543-01 19 44417846 44417846 T C ZNF45 Missense_Mutation p.E581G 0.29 tolerated(0.08) probably_damaging(0.999) TCGA-AY-5543-01 19 48551633 48551633 C T PLA2G4C Silent p.P541P 0.38 TCGA-AY-5543-01 19 57184242 57184242 G T ZNF835 5'Flank 0.22 TCGA-AY-5543-01 19 57766241 57766241 T A ZNF805 3'Flank 0.34 TCGA-AY-5543-01 1 112525311 112525311 C T KCND3 Missense_Mutation p.R13Q 0.35 deleterious(0.05) possibly_damaging(0.602) TCGA-AY-5543-01 1 151991167 151991167 T C NBPF18P RNA 0.11 TCGA-AY-5543-01 1 156737854 156737854 C T PRCC Silent p.S97S 0.24 TCGA-AY-5543-01 1 159283724 159283724 G A OR10J3 Silent p.C242C 0.39 TCGA-AY-5543-01 1 175113684 175113684 G A TNN Missense_Mutation p.E1253K 0.26 deleterious(0.04) probably_damaging(0.951) TCGA-AY-5543-01 1 183196762 183196762 C T LAMC2 Silent p.N466N 0.29 TCGA-AY-5543-01 1 19549293 19549293 C T EMC1 Silent p.E804E 0.39 TCGA-AY-5543-01 1 216243544 216243544 A T USH2A Missense_Mutation p.V1983E 0.11 possibly_damaging(0.524) TCGA-AY-5543-01 1 227618272 227618272 C G CTD-2090I13.1 RNA 0.29 TCGA-AY-5543-01 1 237947096 237947096 G A RYR2 Silent p.S4028S 0.33 TCGA-AY-5543-01 1 247150499 247150499 C A ZNF695 Nonsense_Mutation p.E440* 0.37 TCGA-AY-5543-01 1 248458365 248458365 G T OR2T12 Silent p.I172I 0.30 TCGA-AY-5543-01 1 33956697 33956697 T C ZSCAN20 Missense_Mutation p.I280T 0.29 tolerated(0.39) benign(0.002) TCGA-AY-5543-01 1 40768448 40768448 C T COL9A2 Missense_Mutation p.R546Q 0.34 deleterious(0) probably_damaging(0.919) TCGA-AY-5543-01 1 4772524 4772524 G A AJAP1 Silent p.P198P 0.41 TCGA-AY-5543-01 1 52260191 52260191 C A NRD1 Missense_Mutation p.A978S 0.26 tolerated(1) benign(0.015) TCGA-AY-5543-01 1 6184144 6184144 G A CHD5 Silent p.N1521N 0.35 TCGA-AY-5543-01 1 90048800 90048800 T C LRRC8B Silent p.A197A 0.10 TCGA-AY-5543-01 20 1961090 1961090 C T PDYN Missense_Mutation p.R215H 0.18 deleterious(0) probably_damaging(0.999) TCGA-AY-5543-01 20 3897664 3897664 T A PANK2 Silent p.I501I 0.13 TCGA-AY-5543-01 21 11058163 11058163 C T BAGE2 Intron 0.11 TCGA-AY-5543-01 21 28214228 28214228 C T ADAMTS1 Missense_Mutation p.V387I 0.30 tolerated(0.21) benign(0.014) TCGA-AY-5543-01 21 31965072 31965072 G A KRTAP6-3 Missense_Mutation p.G96D 0.32 unknown(0) TCGA-AY-5543-01 22 18898436 18898436 G A DGCR6 Silent p.A136A 0.17 TCGA-AY-5543-01 2 101014495 101014495 G A CHST10 Missense_Mutation p.S101L 0.14 deleterious(0.01) benign(0.001) TCGA-AY-5543-01 2 112761543 112761543 G T MERTK Missense_Mutation p.A617S 0.36 deleterious(0) probably_damaging(0.944) TCGA-AY-5543-01 2 127950725 127950725 C T CYP27C1 Missense_Mutation p.R316H 0.38 deleterious(0) probably_damaging(0.995) TCGA-AY-5543-01 2 179204432 179204432 C T OSBPL6 Missense_Mutation p.R310W 0.40 deleterious(0) possibly_damaging(0.66) TCGA-AY-5543-01 2 182766769 182766769 C T SSFA2 Missense_Mutation p.S330L 0.16 tolerated(0.22) benign(0.381) TCGA-AY-5543-01 2 188361735 188361735 T C TFPI Silent p.K64K 0.08 TCGA-AY-5543-01 2 189932769 189932769 G C COL5A2 Missense_Mutation p.T458S 0.43 probably_damaging(0.952) TCGA-AY-5543-01 2 202006294 202006294 C A CFLAR Intron 0.29 TCGA-AY-5543-01 2 210637826 210637826 T G UNC80 Missense_Mutation p.L34W 0.34 probably_damaging(0.987) TCGA-AY-5543-01 2 210885178 210885178 G C RPE 3'UTR 0.28 TCGA-AY-5543-01 2 215440475 215440475 T C VWC2L Silent p.C200C 0.09 TCGA-AY-5543-01 2 228884353 228884353 C G SPHKAP Missense_Mutation p.R406T 0.38 deleterious(0) probably_damaging(0.996) TCGA-AY-5543-01 2 48602517 48602517 C T FOXN2 Missense_Mutation p.R411C 0.18 deleterious(0) possibly_damaging(0.708) TCGA-AY-5543-01 2 84822904 84822904 G A DNAH6 Missense_Mutation p.M953I 0.09 tolerated(0.19) benign(0.021) TCGA-AY-5543-01 2 85836008 85836008 C T C2orf68 3'UTR 0.28 TCGA-AY-5543-01 3 122274937 122274937 C G PARP9 Missense_Mutation p.W62C 0.31 tolerated(0.09) benign(0.021) TCGA-AY-5543-01 3 150881783 150881783 C T MED12L Missense_Mutation p.P404L 0.35 deleterious(0) probably_damaging(0.99) TCGA-AY-5543-01 3 151451722 151451722 C G AADACL2 5'UTR 0.35 TCGA-AY-5543-01 3 168802733 168802733 C T MECOM Silent p.A1105A 0.32 TCGA-AY-5543-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.28 deleterious(0.02) probably_damaging(0.959) TCGA-AY-5543-01 3 20212542 20212542 G A SGOL1 Missense_Mutation p.L489F 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-AY-5543-01 3 38622693 38622693 C T SCN5A Missense_Mutation p.R986Q 0.40 tolerated(0.3) benign(0.001) TCGA-AY-5543-01 3 48500819 48500819 T C ATRIP Silent p.F297F 0.27 TCGA-AY-5543-01 3 49881258 49881258 G A TRAIP Silent p.A128A 0.32 TCGA-AY-5543-01 3 9822143 9822143 C T TADA3 Missense_Mutation p.M399I 0.36 tolerated(0.21) benign(0.223) TCGA-AY-5543-01 4 100134890 100134890 T C ADH6 Silent p.G45G 0.10 TCGA-AY-5543-01 4 169305890 169305890 T G DDX60L Missense_Mutation p.K1330T 0.31 deleterious(0) probably_damaging(0.983) TCGA-AY-5543-01 4 79772128 79772128 T C BMP2K Silent p.G267G 0.10 TCGA-AY-5543-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.19 TCGA-AY-5543-01 5 112175766 112175766 C - APC Frame_Shift_Del p.T1493Rfs*14 0.32 TCGA-AY-5543-01 5 140558523 140558523 G A PCDHB8 Missense_Mutation p.R303Q 0.31 tolerated_low_confidence(0.11) benign(0.008) TCGA-AY-5543-01 5 149630365 149630365 C T CAMK2A Silent p.S234S 0.31 TCGA-AY-5543-01 5 154190830 154190830 G A LARP1 Missense_Mutation p.R879Q 0.47 deleterious(0) probably_damaging(0.998) TCGA-AY-5543-01 5 155771675 155771675 G T SGCD Missense_Mutation p.M60I 0.15 deleterious(0) possibly_damaging(0.591) TCGA-AY-5543-01 5 159996662 159996662 C T ATP10B Missense_Mutation p.G1260D 0.41 tolerated(0.08) possibly_damaging(0.707) TCGA-AY-5543-01 5 32790712 32790712 T C NPR3 3'UTR 0.38 TCGA-AY-5543-01 5 33944876 33944876 G A SLC45A2 Silent p.V490V 0.46 TCGA-AY-5543-01 5 801220 801220 T C ZDHHC11 3'UTR 0.14 TCGA-AY-5543-01 5 82841451 82841451 G A VCAN Missense_Mutation p.G3121R 0.50 deleterious(0) probably_damaging(1) TCGA-AY-5543-01 6 109764230 109764230 G C SMPD2 Missense_Mutation p.Q225H 0.14 tolerated(0.08) benign(0.033) TCGA-AY-5543-01 6 129687411 129687411 C T LAMA2 Silent p.L1589L 0.09 TCGA-AY-5543-01 6 136599661 136599661 C A BCLAF1 Missense_Mutation p.V120F 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-AY-5543-01 6 13977844 13977844 C T RNF182 Missense_Mutation p.S165L 0.10 deleterious(0.01) benign(0.149) TCGA-AY-5543-01 6 151894587 151894587 G T CCDC170 Missense_Mutation p.K351N 0.32 deleterious(0) benign(0.444) TCGA-AY-5543-01 6 152565762 152565762 T C SYNE1 Silent p.K6534K 0.37 TCGA-AY-5543-01 6 27861215 27861215 T C HIST1H2BO 5'UTR 0.31 TCGA-AY-5543-01 6 28135053 28135053 G A ZNF192P1 RNA 0.39 TCGA-AY-5543-01 6 34985256 34985256 G A ANKS1A Missense_Mutation p.R477K 0.42 tolerated_low_confidence(0.36) benign(0.146) TCGA-AY-5543-01 6 35854513 35854513 C T SRPK1 Missense_Mutation p.V156I 0.31 tolerated(0.19) benign(0.007) TCGA-AY-5543-01 6 37420860 37420860 G A CMTR1 Missense_Mutation p.R216Q 0.29 tolerated(0.08) benign(0.011) TCGA-AY-5543-01 6 74516595 74516595 C A CD109 Missense_Mutation p.L997I 0.25 tolerated(0.07) benign(0.208) TCGA-AY-5543-01 6 83754351 83754351 C T UBE3D Silent p.P131P 0.31 TCGA-AY-5543-01 7 141722094 141722094 T C MGAM Missense_Mutation p.L246P 0.23 deleterious(0.02) possibly_damaging(0.789) TCGA-AY-5543-01 7 14797319 14797319 G T DGKB Missense_Mutation p.F36L 0.22 deleterious(0.01) possibly_damaging(0.881) TCGA-AY-5543-01 7 34010014 34010014 G A BMPER Missense_Mutation p.C159Y 0.25 deleterious(0) probably_damaging(0.974) TCGA-AY-5543-01 7 3678668 3678668 C A SDK1 Missense_Mutation p.A164D 0.22 deleterious(0) benign(0.363) TCGA-AY-5543-01 7 4153699 4153699 C A SDK1 Missense_Mutation p.P1206T 0.52 deleterious(0) probably_damaging(0.994) TCGA-AY-5543-01 7 56550078 56550078 C T RP11-760D2.1 RNA 0.15 TCGA-AY-5543-01 7 79082727 79082727 A T MAGI2 5'UTR 0.26 TCGA-AY-5543-01 8 110980727 110980727 A G KCNV1 Missense_Mutation p.Y365H 0.25 deleterious(0.05) benign(0.053) TCGA-AY-5543-01 8 139890536 139890536 G T COL22A1 Missense_Mutation p.L39M 0.22 unknown(0) TCGA-AY-5543-01 8 2796264 2796264 G A CSMD1 Missense_Mutation p.T3513M 0.44 probably_damaging(0.972) TCGA-AY-5543-01 8 73850397 73850397 T C KCNB2 3'UTR 0.33 TCGA-AY-5543-01 8 77768158 77768158 G A ZFHX4 Missense_Mutation p.G3001R 0.29 probably_damaging(0.99) TCGA-AY-5543-01 8 87951848 87951848 A C CNBD1 Missense_Mutation p.E99D 0.23 tolerated(0.24) benign(0.004) TCGA-AY-5543-01 9 106864733 106864733 A G SMC2 Missense_Mutation p.E300G 0.27 deleterious(0) probably_damaging(0.972) TCGA-AY-5543-01 9 117053104 117053104 C T COL27A1 Silent p.D1461D 0.27 TCGA-AY-5543-01 9 13224537 13224537 C T MPDZ Missense_Mutation p.V77I 0.21 tolerated(0.72) benign(0.001) TCGA-AY-5543-01 9 136320684 136320684 G A ADAMTS13 Missense_Mutation p.R1176Q 0.42 tolerated(0.78) benign(0.001) TCGA-AY-5543-01 9 137710510 137710510 C T COL5A1 Silent p.A1413A 0.25 TCGA-AY-5543-01 9 32542995 32542995 T C TOPORS Missense_Mutation p.M510V 0.26 tolerated(0.32) benign(0.011) TCGA-AY-5543-01 9 34290377 34290377 T C KIF24 Missense_Mutation p.T308A 0.45 deleterious(0.01) possibly_damaging(0.617) TCGA-AY-5543-01 9 71628382 71628382 C A PRKACG Missense_Mutation p.E209D 0.33 deleterious(0) probably_damaging(0.999) TCGA-AY-5543-01 9 75780070 75780070 C T ANXA1 Silent p.D217D 0.10 TCGA-AY-5543-01 X 10417723 10417723 C T MID1 Silent p.P563P 0.44 TCGA-AY-5543-01 X 151818226 151818226 T A GABRQ Missense_Mutation p.I211N 0.54 deleterious(0) probably_damaging(0.975) TCGA-AY-5543-01 X 3228197 3228197 G T MXRA5 Missense_Mutation p.Q2683K 0.34 deleterious(0.02) possibly_damaging(0.466) TCGA-AY-5543-01 X 47434143 47434143 C T SYN1 Missense_Mutation p.R446H 0.41 tolerated(0.13) benign(0.014) TCGA-AY-5543-01 X 54817416 54817416 C T ITIH6 Missense_Mutation p.G157D 0.44 deleterious(0.04) probably_damaging(0.978) TCGA-AY-5543-01 X 68060376 68060376 G A EFNB1 Missense_Mutation p.R307Q 0.48 deleterious(0) probably_damaging(0.998) TCGA-AY-5543-01 X 69283037 69283037 G T OTUD6A Missense_Mutation p.E221D 0.55 deleterious(0) probably_damaging(0.999) TCGA-AY-6196-01 10 105785579 105785579 T G SLK 3'UTR 0.21 TCGA-AY-6196-01 10 123260410 123260410 C T FGFR2 Missense_Mutation p.M498I 0.13 deleterious(0.02) benign(0.074) TCGA-AY-6196-01 10 123276884 123276884 C T FGFR2 Intron 0.16 TCGA-AY-6196-01 10 127789786 127789786 T A ADAM12 Missense_Mutation p.I259F 0.08 deleterious(0) possibly_damaging(0.857) TCGA-AY-6196-01 10 28149641 28149641 G A ARMC4 Silent p.N978N 0.31 TCGA-AY-6196-01 10 30336573 30336573 G A KIAA1462 Missense_Mutation p.R57C 0.13 deleterious(0.03) possibly_damaging(0.729) TCGA-AY-6196-01 10 48429447 48429447 C G GDF10 Missense_Mutation p.E147Q 0.18 tolerated(0.12) benign(0.189) TCGA-AY-6196-01 10 50151455 50151455 C T WDFY4 Silent p.Y2570Y 0.17 TCGA-AY-6196-01 10 53059347 53059347 C G PRKG1 Intron 0.10 TCGA-AY-6196-01 10 85933676 85933676 A G C10orf99 Silent p.E23E 0.23 TCGA-AY-6196-01 10 96030300 96030300 A G PLCE1 Missense_Mutation p.I1483V 0.17 deleterious(0.01) possibly_damaging(0.604) TCGA-AY-6196-01 10 98763846 98763846 C T SLIT1 Missense_Mutation p.E1282K 0.22 tolerated(0.24) benign(0.446) TCGA-AY-6196-01 11 125851120 125851120 C T CDON Missense_Mutation p.G1034R 0.17 deleterious(0.04) benign(0.082) TCGA-AY-6196-01 11 18765677 18765678 - TC PTPN5 Frame_Shift_Ins p.M56Rfs*70 0.20 TCGA-AY-6196-01 11 19967976 19967976 A G NAV2 Missense_Mutation p.T749A 0.20 deleterious(0) probably_damaging(0.989) TCGA-AY-6196-01 11 292625 292625 A T ATHL1 Missense_Mutation p.H369L 0.20 deleterious(0) probably_damaging(1) TCGA-AY-6196-01 11 32636148 32636148 G A CCDC73 Silent p.N572N 0.19 TCGA-AY-6196-01 11 47346156 47346156 C G MADD Intron 0.19 TCGA-AY-6196-01 11 47360144 47360144 A G MYBPC3 Silent p.D745D 0.11 TCGA-AY-6196-01 11 51411704 51411704 C G OR4A5 Missense_Mutation p.G231A 0.25 deleterious_low_confidence(0.02) benign(0.003) TCGA-AY-6196-01 11 5664659 5664659 G T TRIM34 Missense_Mutation p.G396V 0.14 deleterious(0) probably_damaging(0.998) TCGA-AY-6196-01 11 59377962 59377962 C G OSBP Missense_Mutation p.G155R 0.15 deleterious(0) probably_damaging(0.998) TCGA-AY-6196-01 11 60688418 60688418 T C TMEM109 Missense_Mutation p.S100P 0.17 tolerated(0.23) probably_damaging(0.998) TCGA-AY-6196-01 11 63067102 63067102 G T SLC22A10 Splice_Site p.X357_splice 0.16 TCGA-AY-6196-01 11 63312197 63312197 C T RARRES3 Missense_Mutation p.R75W 0.16 deleterious(0) benign(0.04) TCGA-AY-6196-01 11 65631348 65631348 C T MUS81 Silent p.I345I 0.16 TCGA-AY-6196-01 12 106890626 106890626 G A POLR3B Missense_Mutation p.V972M 0.50 tolerated(1) benign(0.012) TCGA-AY-6196-01 12 111885885 111885885 T A SH2B3 Missense_Mutation p.S503T 0.39 tolerated(0.47) benign(0.006) TCGA-AY-6196-01 12 112616765 112616765 G A HECTD4 Missense_Mutation p.A3632V 0.06 benign(0.014) TCGA-AY-6196-01 12 129558563 129558563 C T TMEM132D Missense_Mutation p.V1053I 0.52 tolerated(1) benign(0.002) TCGA-AY-6196-01 12 15699468 15699468 A T PTPRO Intron 0.11 TCGA-AY-6196-01 12 20787835 20787835 G A PDE3A Splice_Site p.X616_splice 0.13 TCGA-AY-6196-01 12 21679880 21679880 A G C12orf39 Missense_Mutation p.N23D 0.17 tolerated(0.23) benign(0.009) TCGA-AY-6196-01 12 25260816 25260816 T C LRMP Missense_Mutation p.L441P 0.12 deleterious(0.01) benign(0.047) TCGA-AY-6196-01 12 49663746 49663746 G A TUBA1C Missense_Mutation p.R121Q 0.26 tolerated_low_confidence(0.08) benign(0.005) TCGA-AY-6196-01 12 51112573 51112598 AAATAGAAGAGAATGATTTGGTGAGG - DIP2B Frame_Shift_Del p.I979Afs*17 0.09 TCGA-AY-6196-01 12 54428295 54428295 G T HOXC5 3'UTR 0.17 TCGA-AY-6196-01 12 58001097 58001097 C T DTX3 Missense_Mutation p.P151S 0.43 tolerated(1) benign(0) TCGA-AY-6196-01 12 58145497 58145497 C T CDK4 Missense_Mutation p.A2T 0.08 tolerated(0.29) benign(0.025) TCGA-AY-6196-01 12 6730312 6730312 C A LPAR5 Missense_Mutation p.A35S 0.22 deleterious(0.02) benign(0.118) TCGA-AY-6196-01 12 71003595 71003595 T A PTPRB Intron 0.08 TCGA-AY-6196-01 13 103382936 103382936 C T CCDC168 Missense_Mutation p.R2075H 0.40 tolerated(0.1) unknown(0) TCGA-AY-6196-01 13 114321673 114321673 C T GRK1 5'UTR 0.17 TCGA-AY-6196-01 13 29599897 29599897 G A MTUS2 Silent p.P364P 0.18 TCGA-AY-6196-01 13 32912671 32912671 G A BRCA2 Silent p.A1393A 0.24 TCGA-AY-6196-01 13 77900686 77900686 G T MYCBP2 Missense_Mutation p.D37E 0.35 benign(0) TCGA-AY-6196-01 13 98645474 98645474 A G IPO5 Missense_Mutation p.Q321R 0.14 tolerated(0.66) benign(0.012) TCGA-AY-6196-01 14 23354201 23354201 G T REM2 Missense_Mutation p.S141I 0.19 tolerated(0.15) benign(0.05) TCGA-AY-6196-01 14 36005113 36005113 G A INSM2 Missense_Mutation p.S552N 0.04 tolerated(0.39) benign(0.029) TCGA-AY-6196-01 14 37754636 37754636 G A MIPOL1 Missense_Mutation p.E203K 0.19 tolerated(0.07) probably_damaging(0.916) TCGA-AY-6196-01 14 51452785 51452785 A C TRIM9 Intron 0.13 TCGA-AY-6196-01 14 55310462 55310462 C A GCH1 3'UTR 0.17 TCGA-AY-6196-01 14 55529737 55529755 TCCTTTAGGTCCATGGGGA - MAPK1IP1L Frame_Shift_Del p.L142Cfs*134 0.17 TCGA-AY-6196-01 14 63175090 63175090 G A KCNH5 Silent p.P701P 0.30 TCGA-AY-6196-01 14 65009360 65009360 A T HSPA2 Missense_Mutation p.K598M 0.19 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-AY-6196-01 14 94066971 94066971 A C UNC79 Silent p.T966T 0.17 TCGA-AY-6196-01 14 94467535 94467535 A T LINC00521 RNA 0.25 TCGA-AY-6196-01 15 23326616 23326616 C T HERC2P2 RNA 0.39 TCGA-AY-6196-01 15 30053945 30053945 A C TJP1 Missense_Mutation p.S241A 0.49 deleterious(0) probably_damaging(0.927) TCGA-AY-6196-01 15 30053946 30053946 C A TJP1 Missense_Mutation p.M240I 0.49 deleterious(0.03) benign(0.02) TCGA-AY-6196-01 15 43484940 43484940 G C CCNDBP1 Splice_Site p.X287_splice 0.15 TCGA-AY-6196-01 15 49907384 49907384 C A FAM227B 5'UTR 0.13 TCGA-AY-6196-01 15 56208538 56208538 G T NEDD4 Missense_Mutation p.S164R 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AY-6196-01 15 58889827 58889827 C T ADAM10 Silent p.R722R 0.13 TCGA-AY-6196-01 15 64422121 64422121 C T SNX1 Missense_Mutation p.R272C 0.24 deleterious(0) probably_damaging(1) TCGA-AY-6196-01 15 74627474 74627474 A T CCDC33 Intron 0.19 TCGA-AY-6196-01 15 79092787 79092787 C T ADAMTS7 Missense_Mutation p.R68H 0.18 tolerated(0.66) benign(0.031) TCGA-AY-6196-01 15 83434039 83434039 G A FSD2 Missense_Mutation p.R567C 0.28 tolerated(0.31) benign(0.001) TCGA-AY-6196-01 15 89402047 89402047 G A ACAN Silent p.G2077G 0.19 TCGA-AY-6196-01 16 11945356 11945356 G A RSL1D1 Missense_Mutation p.A5V 0.24 tolerated(0.17) unknown(0) TCGA-AY-6196-01 16 15797806 15797807 TT - MYH11 3'UTR 0.12 TCGA-AY-6196-01 16 20043914 20043914 G C GPR139 Missense_Mutation p.L69V 0.13 tolerated(0.06) probably_damaging(0.994) TCGA-AY-6196-01 16 20491995 20491995 G A ACSM2A Missense_Mutation p.R461Q 0.30 deleterious(0) probably_damaging(0.924) TCGA-AY-6196-01 16 47002009 47002009 T C DNAJA2 Missense_Mutation p.S144G 0.11 tolerated(0.28) benign(0.003) TCGA-AY-6196-01 16 50069412 50069412 C G CNEP1R1 3'UTR 0.10 TCGA-AY-6196-01 16 51171248 51171248 G A SALL1 Silent p.N1250N 0.25 TCGA-AY-6196-01 16 53404753 53404753 C A RP11-44F14.1 RNA 0.28 TCGA-AY-6196-01 16 57171094 57171094 G A CPNE2 Missense_Mutation p.C401Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-AY-6196-01 16 57752301 57752301 A C CCDC135 Missense_Mutation p.M374L 0.15 tolerated(0.48) benign(0.011) TCGA-AY-6196-01 16 57803505 57803505 A T KIFC3 Splice_Site p.X406_splice 0.15 TCGA-AY-6196-01 16 69154275 69154275 C T CHTF8 Silent p.P19P 0.38 TCGA-AY-6196-01 16 711354 711354 G T WDR90 Missense_Mutation p.A1176S 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-AY-6196-01 16 89986243 89986243 G T MC1R Missense_Mutation p.V193L 0.43 deleterious(0.03) benign(0.203) TCGA-AY-6196-01 16 921264 921264 G A LMF1 Silent p.D325D 0.22 TCGA-AY-6196-01 17 10247249 10247249 C A MYH13 Missense_Mutation p.V588L 0.06 deleterious(0.01) possibly_damaging(0.528) TCGA-AY-6196-01 17 29258965 29258965 G A ADAP2 Missense_Mutation p.G126R 0.21 tolerated(0.66) benign(0.03) TCGA-AY-6196-01 17 31102939 31102939 G A MYO1D Silent p.N169N 0.17 TCGA-AY-6196-01 17 40706777 40706777 G A HSD17B1 Missense_Mutation p.D270N 0.56 deleterious(0.03) possibly_damaging(0.708) TCGA-AY-6196-01 17 4803461 4803461 G T C17orf107 Intron 0.19 TCGA-AY-6196-01 17 56621449 56621449 G A C17orf47 Silent p.Y33Y 0.46 TCGA-AY-6196-01 17 58259020 58259020 T A USP32 Missense_Mutation p.S1405C 0.16 tolerated_low_confidence(0.05) possibly_damaging(0.65) TCGA-AY-6196-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.45 tolerated(0.13) possibly_damaging(0.631) TCGA-AY-6196-01 17 78083807 78083807 A T GAA Missense_Mutation p.R464W 0.45 deleterious(0.01) benign(0.364) TCGA-AY-6196-01 18 13885566 13885566 C T MC2R 5'UTR 0.27 TCGA-AY-6196-01 18 22804450 22804450 G A ZNF521 Silent p.N1144N 0.27 TCGA-AY-6196-01 18 2891701 2891701 G A EMILIN2 Missense_Mutation p.G526R 0.14 tolerated(0.18) possibly_damaging(0.634) TCGA-AY-6196-01 18 44101191 44101191 A G LOXHD1 Silent p.L603L 0.44 TCGA-AY-6196-01 18 44146311 44146311 G C LOXHD1 Silent p.T782T 0.15 TCGA-AY-6196-01 18 54423877 54423877 G A WDR7 Missense_Mutation p.D685N 0.12 deleterious(0) probably_damaging(0.962) TCGA-AY-6196-01 18 55104151 55104151 G C ONECUT2 Missense_Mutation p.Q401H 0.26 deleterious(0) probably_damaging(0.999) TCGA-AY-6196-01 19 11833954 11833954 C G ZNF823 Missense_Mutation p.G132A 0.33 tolerated(0.1) benign(0.047) TCGA-AY-6196-01 19 14736400 14736400 T A EMR3 Missense_Mutation p.Q608H 0.12 deleterious(0) benign(0.235) TCGA-AY-6196-01 19 19218703 19218703 G A SLC25A42 Missense_Mutation p.M166I 0.11 tolerated(0.18) benign(0.005) TCGA-AY-6196-01 19 36499490 36499490 T G SYNE4 Missense_Mutation p.T32P 0.09 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AY-6196-01 19 39023350 39023350 G C RYR1 Missense_Mutation p.E3745Q 0.08 benign(0.064) TCGA-AY-6196-01 19 39078068 39078068 C T RYR1 3'Flank 0.07 TCGA-AY-6196-01 19 39597669 39597669 G A PAPL Missense_Mutation p.R399Q 0.48 deleterious(0.04) possibly_damaging(0.629) TCGA-AY-6196-01 19 39999066 39999066 C A DLL3 3'UTR 0.11 TCGA-AY-6196-01 19 49990791 49990791 T G RPL13A 5'Flank 0.24 TCGA-AY-6196-01 19 49990792 49990792 C T RPL13A 5'Flank 0.23 TCGA-AY-6196-01 19 54649749 54649749 C G CNOT3 Silent p.P269P 0.18 TCGA-AY-6196-01 19 54946815 54946815 G C TTYH1 Missense_Mutation p.A407P 0.07 deleterious(0.03) probably_damaging(0.91) TCGA-AY-6196-01 19 55450903 55450903 G A NLRP7 Silent p.S428S 0.12 TCGA-AY-6196-01 19 58490414 58490414 C T ZNF606 Missense_Mutation p.C545Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-AY-6196-01 19 58578962 58578962 C A ZNF135 Silent p.T394T 0.34 TCGA-AY-6196-01 19 9086395 9086395 C T MUC16 Missense_Mutation p.G1807E 0.17 unknown(0) TCGA-AY-6196-01 1 100155272 100155272 T C PALMD Missense_Mutation p.S486P 0.20 tolerated(0.54) benign(0.006) TCGA-AY-6196-01 1 10211549 10211549 T G UBE4B Missense_Mutation p.F952L 0.29 tolerated(1) benign(0.02) TCGA-AY-6196-01 1 104122140 104122140 A C AMY2B 3'UTR 0.19 TCGA-AY-6196-01 1 10523248 10523248 C A DFFA Missense_Mutation p.G217V 0.18 tolerated(0.33) benign(0.049) TCGA-AY-6196-01 1 108771558 108771558 G T NBPF4 Missense_Mutation p.N548K 0.08 tolerated(0.1) benign(0.403) TCGA-AY-6196-01 1 110030427 110030427 G A ATXN7L2 Splice_Site p.X234_splice 0.16 TCGA-AY-6196-01 1 1132097 1132097 G T TTLL10 Splice_Site p.X506_splice 0.11 TCGA-AY-6196-01 1 113255424 113255424 T G PPM1J Missense_Mutation p.K224T 0.19 deleterious(0) probably_damaging(0.988) TCGA-AY-6196-01 1 115220554 115220554 C A AMPD1 Nonsense_Mutation p.E434* 0.19 TCGA-AY-6196-01 1 11562944 11562944 C T PTCHD2 Nonsense_Mutation p.Q436* 0.48 TCGA-AY-6196-01 1 117617533 117617533 G C TTF2 Missense_Mutation p.Q109H 0.33 tolerated(0.07) benign(0.007) TCGA-AY-6196-01 1 13108885 13108885 C A PRAMEF23 RNA 0.22 TCGA-AY-6196-01 1 13108930 13108930 G T PRAMEF23 RNA 0.35 TCGA-AY-6196-01 1 145365358 145365358 C T NBPF10 Missense_Mutation p.T3328I 0.09 possibly_damaging(0.621) TCGA-AY-6196-01 1 1471146 1471146 C T TMEM240 Missense_Mutation p.G66R 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-AY-6196-01 1 150529748 150529748 G C ADAMTSL4 Missense_Mutation p.G662R 0.11 tolerated(0.14) benign(0.043) TCGA-AY-6196-01 1 151265311 151265311 C G PI4KB 3'UTR 0.27 TCGA-AY-6196-01 1 153637780 153637780 C T ILF2 Missense_Mutation p.E165K 0.25 tolerated(0.11) benign(0.058) TCGA-AY-6196-01 1 155154431 155154431 G A TRIM46 Silent p.L564L 0.19 TCGA-AY-6196-01 1 156169997 156169997 C T SLC25A44 Missense_Mutation p.S120F 0.31 deleterious(0) probably_damaging(1) TCGA-AY-6196-01 1 158226779 158226779 G A CD1A Missense_Mutation p.A270T 0.12 tolerated(0.12) probably_damaging(0.995) TCGA-AY-6196-01 1 17084149 17084149 G A MST1L RNA 0.10 TCGA-AY-6196-01 1 179815820 179815820 G A TOR1AIP2 Missense_Mutation p.P267S 0.11 deleterious(0.01) probably_damaging(1) TCGA-AY-6196-01 1 202400649 202400669 AAGAAATGGAGGAAGAAAATA - PPP1R12B In_Frame_Del p.M350_E356del 0.14 TCGA-AY-6196-01 1 215987107 215987107 C A USH2A Missense_Mutation p.C3237F 0.17 probably_damaging(0.996) TCGA-AY-6196-01 1 226475390 226475390 C G LIN9 Missense_Mutation p.E141Q 0.10 deleterious(0) probably_damaging(1) TCGA-AY-6196-01 1 226567658 226567658 A C PARP1 Missense_Mutation p.L503R 0.11 tolerated(0.36) benign(0.017) TCGA-AY-6196-01 1 228496002 228496002 G C OBSCN Silent p.L5176L 0.10 TCGA-AY-6196-01 1 230338932 230338932 G A GALNT2 Silent p.T90T 0.12 TCGA-AY-6196-01 1 235383261 235383261 T G ARID4B Missense_Mutation p.E477A 0.10 tolerated(0.08) benign(0.19) TCGA-AY-6196-01 1 237821298 237821298 C A RYR2 Silent p.S2728S 0.13 TCGA-AY-6196-01 1 243329294 243329294 C G CEP170 Missense_Mutation p.E656D 0.08 tolerated(0.28) possibly_damaging(0.787) TCGA-AY-6196-01 1 27107001 27107001 C G ARID1A Silent p.A2204A 0.32 TCGA-AY-6196-01 1 33291713 33291713 C T S100PBP Missense_Mutation p.R5W 0.16 deleterious_low_confidence(0) benign(0.033) TCGA-AY-6196-01 1 33990497 33990497 C G CSMD2 Missense_Mutation p.E3317Q 0.26 tolerated(0.24) benign(0.059) TCGA-AY-6196-01 1 43739150 43739150 G A TMEM125 3'UTR 0.13 TCGA-AY-6196-01 1 53358521 53358521 C A ZYG11A Missense_Mutation p.H724Q 0.22 tolerated(0.12) benign(0.06) TCGA-AY-6196-01 1 54428054 54428054 A G LRRC42 Missense_Mutation p.N300S 0.22 tolerated(0.83) benign(0.026) TCGA-AY-6196-01 1 6647546 6647546 C G ZBTB48 Silent p.T411T 0.14 TCGA-AY-6196-01 1 74835124 74835124 C T FPGT-TNNI3K Nonsense_Mutation p.R622* 0.33 TCGA-AY-6196-01 1 85097398 85097398 G C C1orf180 5'UTR 0.14 TCGA-AY-6196-01 1 94510268 94510268 G T ABCA4 Missense_Mutation p.S984Y 0.18 deleterious(0) probably_damaging(0.987) TCGA-AY-6196-01 1 97544629 97544629 C T DPYD Missense_Mutation p.S994N 0.12 deleterious(0.02) benign(0.141) TCGA-AY-6196-01 20 31395711 31395722 TCCAGCCAGGCC - DNMT3B 3'UTR 0.18 TCGA-AY-6196-01 20 3781697 3781697 G T CDC25B Missense_Mutation p.R221M 0.50 deleterious(0) probably_damaging(0.987) TCGA-AY-6196-01 20 43940884 43940884 G T RBPJL Silent p.L156L 0.08 TCGA-AY-6196-01 20 44439795 44439795 G C DNTTIP1 Missense_Mutation p.E317D 0.10 tolerated(0.5) benign(0.016) TCGA-AY-6196-01 20 44839105 44839105 C T CDH22 Missense_Mutation p.R376H 0.10 deleterious(0.01) benign(0.024) TCGA-AY-6196-01 20 49209622 49209622 C A FAM65C Missense_Mutation p.R771M 0.12 deleterious(0) probably_damaging(0.945) TCGA-AY-6196-01 20 52788167 52788167 C G CYP24A1 Missense_Mutation p.K164N 0.05 tolerated(0.06) benign(0.113) TCGA-AY-6196-01 20 52790152 52790152 G T CYP24A1 5'UTR 0.13 TCGA-AY-6196-01 20 60987730 60987730 C G RBBP8NL Missense_Mutation p.G609A 0.14 tolerated(0.67) benign(0.014) TCGA-AY-6196-01 20 61512095 61512095 G A DIDO1 Missense_Mutation p.P1738L 0.14 benign(0) TCGA-AY-6196-01 20 61512102 61512102 G A DIDO1 Missense_Mutation p.L1736F 0.13 benign(0.003) TCGA-AY-6196-01 20 62370291 62370291 C G LIME1 3'UTR 0.09 TCGA-AY-6196-01 21 15746418 15746418 C T HSPA13 Silent p.T312T 0.37 TCGA-AY-6196-01 21 27012177 27012177 G A JAM2 Missense_Mutation p.R15H 0.22 tolerated(0.55) benign(0.007) TCGA-AY-6196-01 21 40778190 40778190 G A LCA5L Missense_Mutation p.A544V 0.21 tolerated(0.16) benign(0.024) TCGA-AY-6196-01 21 47549382 47549382 G A COL6A2 Intron 0.20 TCGA-AY-6196-01 22 22569235 22569235 C T IGLV10-54 Silent p.H13H 0.22 TCGA-AY-6196-01 22 25251303 25251303 G A SGSM1 Nonsense_Mutation p.W192* 0.17 TCGA-AY-6196-01 22 26743838 26743838 G T SEZ6L Missense_Mutation p.W789L 0.16 deleterious(0.05) benign(0.313) TCGA-AY-6196-01 22 32266667 32266667 C A DEPDC5 Missense_Mutation p.T1132N 0.17 tolerated(0.18) benign(0.003) TCGA-AY-6196-01 22 36587696 36587696 T G APOL4 Silent p.A160A 0.05 TCGA-AY-6196-01 22 42110078 42110082 AGGTC - MEI1 Splice_Site p.X141_splice 0.09 TCGA-AY-6196-01 22 43606201 43606201 T A SCUBE1 Missense_Mutation p.E810V 0.26 deleterious(0) probably_damaging(1) TCGA-AY-6196-01 2 102476161 102476161 G A MAP4K4 Silent p.Q513Q 0.15 TCGA-AY-6196-01 2 110962482 110962482 G A NPHP1 Nonsense_Mutation p.Q22* 0.17 TCGA-AY-6196-01 2 122485136 122485136 G T NIFK 3'UTR 0.12 TCGA-AY-6196-01 2 127950797 127950797 T C CYP27C1 Missense_Mutation p.E292G 0.20 deleterious(0.04) possibly_damaging(0.803) TCGA-AY-6196-01 2 132021200 132021200 C T POTEE Silent p.D724D 0.17 TCGA-AY-6196-01 2 152317803 152317803 G A RIF1 Missense_Mutation p.R1076Q 0.21 deleterious(0) probably_damaging(0.922) TCGA-AY-6196-01 2 172966235 172966235 C T DLX2 Silent p.P180P 0.07 TCGA-AY-6196-01 2 179449472 179449472 G C TTN Missense_Mutation p.F21632L 0.11 TCGA-AY-6196-01 2 179494976 179494976 C T TTN Missense_Mutation p.R14758Q 0.16 TCGA-AY-6196-01 2 196799504 196799504 A T DNAH7 Silent p.P1094P 0.22 TCGA-AY-6196-01 2 200245123 200245123 G C SATB2 Missense_Mutation p.N187K 0.07 deleterious(0) probably_damaging(0.98) TCGA-AY-6196-01 2 207509152 207509152 C T AC010731.4 RNA 0.15 TCGA-AY-6196-01 2 208992925 208992925 T C CRYGC 3'UTR 0.14 TCGA-AY-6196-01 2 209169636 209169636 C T PIKFYVE Missense_Mutation p.A512V 0.17 deleterious(0.02) probably_damaging(0.958) TCGA-AY-6196-01 2 219617877 219617877 A C TTLL4 Missense_Mutation p.H1076P 0.15 deleterious(0) probably_damaging(0.954) TCGA-AY-6196-01 2 227729770 227729770 C T RHBDD1 Missense_Mutation p.L121F 0.14 tolerated(0.31) benign(0.014) TCGA-AY-6196-01 2 227871940 227871940 G T COL4A4 3'UTR 0.20 TCGA-AY-6196-01 2 227963467 227963467 C T COL4A4 Missense_Mutation p.D383N 0.12 possibly_damaging(0.548) TCGA-AY-6196-01 2 231949814 231949815 - T PSMD1 Frame_Shift_Ins p.L603Afs*7 0.15 TCGA-AY-6196-01 2 27931043 27931043 A T AC074091.13 5'UTR 0.08 TCGA-AY-6196-01 2 48873959 48873959 G T STON1-GTF2A1L Missense_Mutation p.Q956H 0.17 tolerated(0.09) benign(0.017) TCGA-AY-6196-01 2 51254752 51254752 G A NRXN1 Silent p.G220G 0.40 TCGA-AY-6196-01 2 5833260 5833260 A C SOX11 Missense_Mutation p.Q136P 0.36 tolerated(0.24) benign(0.029) TCGA-AY-6196-01 2 61235905 61235905 G T PUS10 Missense_Mutation p.F124L 0.11 tolerated(0.19) possibly_damaging(0.614) TCGA-AY-6196-01 2 70037806 70037806 G A ANXA4 Splice_Site p.X159_splice 0.13 TCGA-AY-6196-01 2 84864453 84864453 G A DNAH6 Silent p.L1591L 0.28 TCGA-AY-6196-01 2 89049637 89049637 C T RPIA 3'UTR 0.31 TCGA-AY-6196-01 2 89086130 89086130 C A ANKRD36BP2 RNA 0.15 TCGA-AY-6196-01 2 89568035 89568035 T A IGKV1-33 Missense_Mutation p.Q25L 0.14 tolerated(0.07) benign(0.03) TCGA-AY-6196-01 2 89952900 89952900 C T IGKV1D-33 Missense_Mutation p.A7V 0.08 tolerated(0.11) benign(0.007) TCGA-AY-6196-01 3 11610123 11610127 TTGTT - VGLL4 Intron 0.35 TCGA-AY-6196-01 3 124114128 124114128 C T KALRN Silent p.G701G 0.16 TCGA-AY-6196-01 3 128200120 128200120 A C GATA2 Silent p.T395T 0.16 TCGA-AY-6196-01 3 130202980 130202980 G A COL6A5 3'UTR 0.21 TCGA-AY-6196-01 3 135801265 135801265 T A PPP2R3A Splice_Site p.X930_splice 0.22 TCGA-AY-6196-01 3 138724475 138724475 T C PRR23A Silent p.P212P 0.13 TCGA-AY-6196-01 3 13916561 13916561 C G WNT7A Missense_Mutation p.V61L 0.05 tolerated(0.09) benign(0.198) TCGA-AY-6196-01 3 160786818 160786818 A C PPM1L Missense_Mutation p.E319A 0.18 deleterious(0.01) possibly_damaging(0.574) TCGA-AY-6196-01 3 172428698 172428698 G T NCEH1 Missense_Mutation p.S58Y 0.16 deleterious(0.01) benign(0.299) TCGA-AY-6196-01 3 179322408 179322408 G T MRPL47 Missense_Mutation p.A2D 0.19 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-AY-6196-01 3 180332577 180332577 A T CCDC39 3'UTR 0.48 TCGA-AY-6196-01 3 186793532 186793532 G T ST6GAL1 Nonsense_Mutation p.E388* 0.29 TCGA-AY-6196-01 3 42772023 42772023 G A CCDC13 Missense_Mutation p.L552F 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-AY-6196-01 3 42774997 42774997 T A CCDC13 Silent p.S492S 0.14 TCGA-AY-6196-01 3 45636823 45636823 G A LIMD1 Missense_Mutation p.R151K 0.08 tolerated(0.52) benign(0.003) TCGA-AY-6196-01 3 48451134 48451134 G C PLXNB1 Silent p.T1928T 0.26 TCGA-AY-6196-01 3 49929247 49929247 C G MST1R Missense_Mutation p.G1099A 0.20 deleterious(0) probably_damaging(0.965) TCGA-AY-6196-01 3 51673919 51673919 A G RAD54L2 Missense_Mutation p.Y712C 0.24 deleterious(0) probably_damaging(0.999) TCGA-AY-6196-01 3 58639419 58639419 G A FAM3D Missense_Mutation p.R35C 0.18 deleterious(0.02) probably_damaging(0.921) TCGA-AY-6196-01 3 66432700 66432710 TGCTCTCAATG - LRIG1 Frame_Shift_Del p.H868Qfs*44 0.15 TCGA-AY-6196-01 3 73432618 73432618 G C PDZRN3 Missense_Mutation p.I1033M 0.09 deleterious(0.03) probably_damaging(0.966) TCGA-AY-6196-01 3 75787929 75787931 GGT AC ZNF717 Frame_Shift_Del p.P282Sfs*297 0.23 TCGA-AY-6196-01 3 97806765 97806765 T C OR5AC2 Missense_Mutation p.V250A 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-AY-6196-01 3 98251366 98251366 G T GPR15 Silent p.L163L 0.15 TCGA-AY-6196-01 4 113571723 113571723 C A LARP7 Silent p.G474G 0.07 TCGA-AY-6196-01 4 153245343 153245343 T A FBXW7 Silent p.T616T 0.23 TCGA-AY-6196-01 4 173730605 173730605 G A GALNTL6 Missense_Mutation p.R216H 0.18 deleterious(0) probably_damaging(1) TCGA-AY-6196-01 4 20529994 20529994 C T SLIT2 Intron 0.16 TCGA-AY-6196-01 4 3319540 3319540 G A RGS12 Missense_Mutation p.C548Y 0.07 tolerated(1) benign(0.118) TCGA-AY-6196-01 4 36134859 36134859 A G ARAP2 Missense_Mutation p.V1139A 0.17 deleterious(0) probably_damaging(0.981) TCGA-AY-6196-01 5 101631976 101631976 G C SLCO4C1 5'UTR 0.43 TCGA-AY-6196-01 5 109760616 109760616 C G TMEM232 Missense_Mutation p.E569Q 0.20 tolerated(0.09) benign(0.39) TCGA-AY-6196-01 5 112770205 112770205 T A TSSK1B Missense_Mutation p.D111V 0.40 deleterious(0.01) benign(0.232) TCGA-AY-6196-01 5 140215001 140215001 G T PCDHA7 Missense_Mutation p.D345Y 0.08 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-AY-6196-01 5 140536960 140536960 C T PCDHB17 Missense_Mutation p.R462C 0.16 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-AY-6196-01 5 140594498 140594498 C T PCDHB13 Missense_Mutation p.T268M 0.18 deleterious_low_confidence(0.02) benign(0.086) TCGA-AY-6196-01 5 161324257 161324267 CAAGCCCGAAA - GABRA1 Frame_Shift_Del p.P402Tfs*9 0.26 TCGA-AY-6196-01 5 163551 163551 A T PLEKHG4B Nonsense_Mutation p.K766* 0.06 TCGA-AY-6196-01 5 180219291 180219291 C T MGAT1 Silent p.P227P 0.35 TCGA-AY-6196-01 5 23527292 23527292 C T PRDM9 Missense_Mutation p.R699W 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-AY-6196-01 5 24488259 24488259 A G CDH10 Missense_Mutation p.I627T 0.72 tolerated(0.09) possibly_damaging(0.84) TCGA-AY-6196-01 5 33455048 33455048 A T TARS Splice_Site p.X185_splice 0.07 TCGA-AY-6196-01 5 43656875 43656875 T G NNT Missense_Mutation p.I805S 0.11 tolerated(0.07) benign(0.383) TCGA-AY-6196-01 5 52781594 52781594 A G FST Intron 0.20 TCGA-AY-6196-01 5 55422794 55422794 G T ANKRD55 Missense_Mutation p.A251E 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AY-6196-01 6 10430016 10430016 G T LINC00518 RNA 0.20 TCGA-AY-6196-01 6 106978072 106978072 G T AIM1 Missense_Mutation p.D1126Y 0.12 deleterious(0) probably_damaging(0.984) TCGA-AY-6196-01 6 111587778 111587778 C T KIAA1919 Missense_Mutation p.P338L 0.27 deleterious(0) probably_damaging(0.997) TCGA-AY-6196-01 6 127797388 127797388 C A SOGA3 Nonsense_Mutation p.E595* 0.09 TCGA-AY-6196-01 6 129802543 129802543 A G LAMA2 Missense_Mutation p.T2570A 0.14 tolerated(0.71) benign(0.004) TCGA-AY-6196-01 6 154727530 154727530 G T CNKSR3 Silent p.L542L 0.18 TCGA-AY-6196-01 6 168467434 168467434 C A FRMD1 Splice_Site p.X154_splice 0.21 TCGA-AY-6196-01 6 24358425 24358425 A C KAAG1 3'UTR 0.24 TCGA-AY-6196-01 6 38821012 38821012 T C DNAH8 Silent p.D1657D 0.15 TCGA-AY-6196-01 6 39040737 39040737 G C GLP1R Missense_Mutation p.W203C 0.17 tolerated(0.2) probably_damaging(0.998) TCGA-AY-6196-01 6 39040738 39040738 A C GLP1R Missense_Mutation p.M204L 0.18 tolerated(0.5) possibly_damaging(0.852) TCGA-AY-6196-01 6 41657520 41657520 A G TFEB Silent p.R166R 0.21 TCGA-AY-6196-01 6 42196044 42196044 G C TRERF1 3'UTR 0.33 TCGA-AY-6196-01 6 49704140 49704140 T A CRISP3 Missense_Mutation p.R74S 0.15 deleterious(0) benign(0.04) TCGA-AY-6196-01 6 63990443 63990443 G A LGSN Missense_Mutation p.T338M 0.34 deleterious(0) probably_damaging(0.932) TCGA-AY-6196-01 6 88773877 88773877 C A SPACA1 Missense_Mutation p.T224N 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-AY-6196-01 7 104750803 104750803 G C KMT2E Missense_Mutation p.D1278H 0.20 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-AY-6196-01 7 107330614 107330614 T C SLC26A4 Missense_Mutation p.S399P 0.15 tolerated(0.07) probably_damaging(1) TCGA-AY-6196-01 7 121616900 121616900 G A PTPRZ1 Missense_Mutation p.R205H 0.15 tolerated(0.15) probably_damaging(0.956) TCGA-AY-6196-01 7 126882788 126882788 G A GRM8 Silent p.S157S 0.15 TCGA-AY-6196-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-AY-6196-01 7 150028507 150028507 T C ZBED6CL 3'UTR 0.30 TCGA-AY-6196-01 7 1733515 1733515 C T AC074389.6 Missense_Mutation p.G6E 0.16 tolerated_low_confidence(0.28) probably_damaging(0.969) TCGA-AY-6196-01 7 20193968 20193968 G A MACC1 Missense_Mutation p.R732C 0.17 deleterious(0) possibly_damaging(0.634) TCGA-AY-6196-01 7 24331394 24331394 C A NPY 3'UTR 0.23 TCGA-AY-6196-01 7 42012040 42012040 G A GLI3 Nonsense_Mutation p.R667* 0.23 TCGA-AY-6196-01 7 44737336 44737336 G T OGDH Silent p.R771R 0.12 TCGA-AY-6196-01 7 45753574 45753574 G T ADCY1 Missense_Mutation p.A1114S 0.16 tolerated_low_confidence(0.39) benign(0.007) TCGA-AY-6196-01 7 45753599 45753599 G A ADCY1 3'UTR 0.15 TCGA-AY-6196-01 7 47851492 47851492 C T PKD1L1 Missense_Mutation p.V2502I 0.33 tolerated(0.6) benign(0.004) TCGA-AY-6196-01 7 4856008 4856008 G C RADIL Missense_Mutation p.P606R 0.17 deleterious(0) probably_damaging(0.997) TCGA-AY-6196-01 7 64168157 64168157 G C ZNF107 Missense_Mutation p.G492A 0.32 deleterious(0.02) probably_damaging(0.938) TCGA-AY-6196-01 7 6661511 6661511 C T ZNF853 Nonsense_Mutation p.Q297* 0.12 TCGA-AY-6196-01 7 81335723 81335723 G A HGF Missense_Mutation p.A546V 0.05 tolerated(1) benign(0.017) TCGA-AY-6196-01 7 83025956 83025956 T A SEMA3E Nonsense_Mutation p.K486* 0.09 TCGA-AY-6196-01 7 88964064 88964064 G T ZNF804B Missense_Mutation p.D590Y 0.15 deleterious(0.03) possibly_damaging(0.838) TCGA-AY-6196-01 7 99798707 99798707 T C STAG3 Intron 0.11 TCGA-AY-6196-01 8 121354669 121354669 C T COL14A1 Silent p.C1624C 0.13 TCGA-AY-6196-01 8 124987490 124987490 A C FER1L6 Missense_Mutation p.K209N 0.43 deleterious(0) possibly_damaging(0.788) TCGA-AY-6196-01 8 12583306 12583306 A T LONRF1 Nonsense_Mutation p.L698* 0.09 TCGA-AY-6196-01 8 141727778 141727778 T C PTK2 Silent p.Q687Q 0.20 TCGA-AY-6196-01 8 145730424 145730424 C A GPT Missense_Mutation p.D135E 0.29 tolerated(0.15) probably_damaging(0.973) TCGA-AY-6196-01 8 59409541 59409541 C A CYP7A1 Missense_Mutation p.R177L 0.23 deleterious(0.04) possibly_damaging(0.667) TCGA-AY-6196-01 8 62563659 62563659 G A ASPH Missense_Mutation p.A147V 0.08 tolerated_low_confidence(0.8) benign(0.002) TCGA-AY-6196-01 8 70553074 70553074 C G SULF1 Missense_Mutation p.H861Q 0.11 deleterious_low_confidence(0.04) benign(0.048) TCGA-AY-6196-01 8 92998455 92998455 C G RUNX1T1 Missense_Mutation p.W403C 0.04 deleterious(0) probably_damaging(0.99) TCGA-AY-6196-01 9 100325076 100325076 T C TMOD1 Missense_Mutation p.S154P 0.06 tolerated(0.11) benign(0.043) TCGA-AY-6196-01 9 107594856 107594856 T G ABCA1 Missense_Mutation p.E503A 0.13 deleterious(0.01) possibly_damaging(0.642) TCGA-AY-6196-01 9 113173839 113173839 T C SVEP1 Missense_Mutation p.Y2051C 0.07 probably_damaging(1) TCGA-AY-6196-01 9 125852556 125852556 G A RABGAP1 Silent p.R840R 0.15 TCGA-AY-6196-01 9 137779098 137779098 T C FCN2 Missense_Mutation p.M260T 0.10 tolerated(0.61) benign(0) TCGA-AY-6196-01 9 15657138 15657138 G A CCDC171 Missense_Mutation p.R279K 0.11 tolerated(0.26) benign(0.011) TCGA-AY-6196-01 9 452062 452062 A G DOCK8 Missense_Mutation p.K2005E 0.28 tolerated(0.1) possibly_damaging(0.838) TCGA-AY-6196-01 9 77397323 77397323 A T TRPM6 Missense_Mutation p.F1055Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-AY-6196-01 9 86518784 86518784 G A KIF27 Nonsense_Mutation p.Q217* 0.14 TCGA-AY-6196-01 9 90501311 90501311 C T SPATA31E1 Nonsense_Mutation p.Q637* 0.07 TCGA-AY-6196-01 9 90502854 90502854 C T SPATA31E1 Missense_Mutation p.S1151F 0.06 tolerated(0.69) benign(0.093) TCGA-AY-6196-01 9 90588989 90588989 G A CDK20 Intron 0.27 TCGA-AY-6196-01 9 95222775 95222775 G A ASPN Nonsense_Mutation p.R263* 0.13 TCGA-AY-6196-01 X 119070357 119070357 C T NKAP Silent p.R192R 0.27 TCGA-AY-6196-01 X 119602985 119602985 G T LAMP2 Missense_Mutation p.L14I 0.30 tolerated(0.07) possibly_damaging(0.459) TCGA-AY-6196-01 X 142717611 142717611 C T SLITRK4 Silent p.E438E 0.20 TCGA-AY-6196-01 X 152727500 152727500 A C HAUS7 Intron 0.64 TCGA-AY-6196-01 X 19013020 19013020 C G GPR64 Missense_Mutation p.G955R 0.43 deleterious(0.01) benign(0.067) TCGA-AY-6196-01 X 30269387 30269387 G A MAGEB1 Silent p.Q259Q 0.67 TCGA-AY-6196-01 X 40506461 40506461 G A CXorf38 Intron 0.63 TCGA-AY-6196-01 X 47100744 47100744 C T USP11 Silent p.F348F 0.68 TCGA-AY-6196-01 X 48546486 48546486 G A WAS Splice_Site p.X259_splice 0.56 TCGA-AY-6196-01 X 48925560 48925560 A G CCDC120 Missense_Mutation p.Y602C 0.19 tolerated(0.19) probably_damaging(0.976) TCGA-AY-6197-01 10 101458485 101458485 G T ENTPD7 Missense_Mutation p.G402V 0.10 deleterious(0) probably_damaging(0.965) TCGA-AY-6197-01 10 102750254 102750254 G A C10orf2 Missense_Mutation p.D516N 0.43 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 10 103587070 103587070 C A KCNIP2 3'Flank 0.33 TCGA-AY-6197-01 10 103588915 103588915 G A KCNIP2 Missense_Mutation p.R104W 0.18 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 10 103789370 103789370 G T C10orf76 Intron 0.36 TCGA-AY-6197-01 10 103827416 103827416 C - HPS6 Frame_Shift_Del p.P730Lfs*25 0.29 TCGA-AY-6197-01 10 105184973 105184973 C T PDCD11 Missense_Mutation p.A999V 0.37 tolerated(0.14) benign(0.103) TCGA-AY-6197-01 10 105206947 105206947 C T CALHM2 Missense_Mutation p.A312T 0.40 tolerated_low_confidence(0.58) benign(0.002) TCGA-AY-6197-01 10 105885522 105885522 G A SFR1 3'UTR 0.33 TCGA-AY-6197-01 10 106075459 106075459 G A ITPRIP Silent p.G117G 0.39 TCGA-AY-6197-01 10 114575074 114575074 G A VTI1A Missense_Mutation p.V196I 0.41 tolerated(0.52) benign(0.004) TCGA-AY-6197-01 10 114900984 114900984 C - TCF7L2 Frame_Shift_Del p.L200Sfs*25 0.34 TCGA-AY-6197-01 10 116196052 116196052 G A ABLIM1 Silent p.R768R 0.31 TCGA-AY-6197-01 10 119799843 119799843 G A RAB11FIP2 Missense_Mutation p.A196V 0.41 deleterious(0.04) possibly_damaging(0.637) TCGA-AY-6197-01 10 124402921 124402921 G A DMBT1 3'UTR 0.10 TCGA-AY-6197-01 10 127344642 127344642 C T TEX36 Missense_Mutation p.V130I 0.40 tolerated(0.13) possibly_damaging(0.85) TCGA-AY-6197-01 10 128209930 128209930 G T C10orf90 5'UTR 0.09 TCGA-AY-6197-01 10 129202678 129202678 C T DOCK1 Silent p.F1348F 0.17 TCGA-AY-6197-01 10 135020855 135020855 G T KNDC1 Missense_Mutation p.S1265I 0.38 tolerated(0.05) possibly_damaging(0.703) TCGA-AY-6197-01 10 135160895 135160896 CT - PRAP1 5'UTR 0.47 TCGA-AY-6197-01 10 14885645 14885645 A G HSPA14 Intron 0.32 TCGA-AY-6197-01 10 24874891 24874892 - A ARHGAP21 Frame_Shift_Ins p.K1443* 0.25 TCGA-AY-6197-01 10 27012797 27012797 T C PDSS1 Silent p.N224N 0.12 TCGA-AY-6197-01 10 27459575 27459575 A - MASTL Frame_Shift_Del p.N564Ifs*4 0.23 TCGA-AY-6197-01 10 28908471 28908471 T C WAC Missense_Mutation p.L627P 0.20 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.33 TCGA-AY-6197-01 10 29776270 29776270 G A SVIL Intron 0.36 TCGA-AY-6197-01 10 33468890 33468890 C A NRP1 3'UTR 0.37 TCGA-AY-6197-01 10 35500543 35500543 A - CREM Intron 0.33 TCGA-AY-6197-01 10 44871476 44871476 G A CXCL12 3'Flank 0.39 TCGA-AY-6197-01 10 49654301 49654301 C T ARHGAP22 3'Flank 0.12 TCGA-AY-6197-01 10 50669533 50669533 T C ERCC6 Missense_Mutation p.E1283G 0.07 deleterious(0) probably_damaging(0.983) TCGA-AY-6197-01 10 51994278 51994278 C T ASAH2 Missense_Mutation p.G241D 0.13 deleterious(0) probably_damaging(0.989) TCGA-AY-6197-01 10 55626441 55626441 G A PCDH15 Silent p.D1226D 0.26 TCGA-AY-6197-01 10 55826628 55826628 T C PCDH15 Silent p.V703V 0.17 TCGA-AY-6197-01 10 5765686 5765686 A - FAM208B Frame_Shift_Del p.R67Dfs*29 0.29 TCGA-AY-6197-01 10 58118024 58118024 C T ZWINT Intron 0.41 TCGA-AY-6197-01 10 60128603 60128603 T C UBE2D1 3'UTR 0.23 TCGA-AY-6197-01 10 64952839 64952839 G T JMJD1C Missense_Mutation p.P1979T 0.28 tolerated(0.11) benign(0.26) TCGA-AY-6197-01 10 64968430 64968430 A G JMJD1C Missense_Mutation p.V1000A 0.39 tolerated(0.52) benign(0.04) TCGA-AY-6197-01 10 68687952 68687952 G A LRRTM3 Silent p.A426A 0.24 TCGA-AY-6197-01 10 70673882 70673882 A - DDX50 Frame_Shift_Del p.K339Nfs*3 0.28 TCGA-AY-6197-01 10 71267269 71267269 T - TSPAN15 3'UTR 0.21 TCGA-AY-6197-01 10 73121990 73121990 C A SLC29A3 Silent p.T351T 0.37 TCGA-AY-6197-01 10 73580004 73580006 TTG - PSAP In_Frame_Del p.N332del 0.29 TCGA-AY-6197-01 10 73831926 73831926 A G SPOCK2 Missense_Mutation p.I112T 0.34 tolerated(0.15) benign(0.007) TCGA-AY-6197-01 10 75551678 75551678 C T ZSWIM8 Missense_Mutation p.R461W 0.30 deleterious(0.01) benign(0.007) TCGA-AY-6197-01 10 76158312 76158312 A - ADK Frame_Shift_Del p.A179Qfs*6 0.27 TCGA-AY-6197-01 10 7791312 7791312 G A ITIH2 3'UTR 0.23 TCGA-AY-6197-01 10 79781349 79781349 T C POLR3A Silent p.V380V 0.24 TCGA-AY-6197-01 10 8115780 8115780 A - GATA3 Frame_Shift_Del p.V379Cfs*26 0.28 TCGA-AY-6197-01 10 85903762 85903762 G T GHITM Nonsense_Mutation p.G81* 0.13 TCGA-AY-6197-01 10 85982409 85982409 G A LRIT2 Missense_Mutation p.T307I 0.25 tolerated(0.14) benign(0.236) TCGA-AY-6197-01 10 88767453 88767453 A G RP11-96C23.10 3'Flank 0.38 TCGA-AY-6197-01 10 88935681 88935681 T C FAM35A Intron 0.07 TCGA-AY-6197-01 10 90699172 90699172 C T ACTA2 Intron 0.25 TCGA-AY-6197-01 10 90984921 90984921 A G LIPA Silent p.G201G 0.11 TCGA-AY-6197-01 10 91497601 91497601 T C KIF20B Silent p.I961I 0.31 TCGA-AY-6197-01 10 95347233 95347233 C A FFAR4 Missense_Mutation p.P334H 0.36 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 10 95719491 95719491 G A PIPSL RNA 0.39 TCGA-AY-6197-01 10 96106297 96106297 A - NOC3L Frame_Shift_Del p.L425Yfs*3 0.13 TCGA-AY-6197-01 10 97099026 97099026 G T SORBS1 Missense_Mutation p.P910Q 0.38 tolerated(0.07) probably_damaging(0.972) TCGA-AY-6197-01 10 97916130 97916130 A - ZNF518A RNA 0.14 TCGA-AY-6197-01 10 98743129 98743129 A G C10orf12 Missense_Mutation p.D661G 0.40 tolerated(0.06) benign(0.006) TCGA-AY-6197-01 10 98988905 98988905 T - ARHGAP19 Frame_Shift_Del p.G492Dfs*49 0.31 TCGA-AY-6197-01 11 102663439 102663439 C T MMP1 Silent p.P310P 0.44 TCGA-AY-6197-01 11 102953491 102953491 T C DCUN1D5 Silent p.G109G 0.05 TCGA-AY-6197-01 11 104825625 104825625 C T CASP4 Nonsense_Mutation p.W37* 0.41 TCGA-AY-6197-01 11 105481611 105481611 T C GRIA4 Intron 0.24 TCGA-AY-6197-01 11 107224355 107224355 T - CWF19L2 Frame_Shift_Del p.A661Lfs*32 0.08 TCGA-AY-6197-01 11 107959388 107959388 T C CUL5 Splice_Site p.X437_splice 0.12 TCGA-AY-6197-01 11 108559729 108559729 T C DDX10 Silent p.Y305Y 0.35 TCGA-AY-6197-01 11 10875324 10875324 T - ZBED5 Frame_Shift_Del p.N390Mfs*3 0.08 TCGA-AY-6197-01 11 112070493 112070493 G A BCO2 Missense_Mutation p.V270M 0.39 deleterious(0.02) probably_damaging(0.993) TCGA-AY-6197-01 11 113141121 113141121 A G NCAM1 Intron 0.21 TCGA-AY-6197-01 11 113215078 113215078 G A TTC12 Missense_Mutation p.R357Q 0.17 tolerated(1) benign(0.001) TCGA-AY-6197-01 11 113677252 113677252 G A USP28 Nonsense_Mutation p.Q787* 0.42 TCGA-AY-6197-01 11 113700063 113700063 T - USP28 Frame_Shift_Del p.K305Nfs*16 0.31 TCGA-AY-6197-01 11 115080343 115080343 G T CADM1 Silent p.T343T 0.34 TCGA-AY-6197-01 11 117710595 117710595 T C FXYD6 Intron 0.37 TCGA-AY-6197-01 11 118015806 118015806 C T SCN4B Missense_Mutation p.R67Q 0.24 tolerated(0.19) benign(0.084) TCGA-AY-6197-01 11 118530455 118530455 C T TREH Splice_Site p.X440_splice 0.22 TCGA-AY-6197-01 11 118626984 118626984 T C DDX6 Missense_Mutation p.N387D 0.12 deleterious(0.05) probably_damaging(0.958) TCGA-AY-6197-01 11 119045249 119045249 T A NLRX1 Missense_Mutation p.S313T 0.09 tolerated(0.08) probably_damaging(0.998) TCGA-AY-6197-01 11 119050838 119050838 T C NLRX1 Missense_Mutation p.L703P 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-AY-6197-01 11 119146729 119146729 A G CBL Missense_Mutation p.T298A 0.23 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 11 119210352 119210352 C T C1QTNF5 Missense_Mutation p.G141S 0.25 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 11 119227605 119227605 C T USP2 Silent p.V586V 0.18 TCGA-AY-6197-01 11 119243565 119243565 G T USP2 Missense_Mutation p.S209Y 0.30 deleterious_low_confidence(0.03) benign(0.229) TCGA-AY-6197-01 11 11990031 11990031 A G DKK3 Missense_Mutation p.C147R 0.18 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 11 124949580 124949580 G T SLC37A2 Missense_Mutation p.V151F 0.38 deleterious(0) benign(0.023) TCGA-AY-6197-01 11 128709056 128709056 C T KCNJ1 Silent p.L380L 0.23 TCGA-AY-6197-01 11 130078385 130078385 G A ST14 Missense_Mutation p.R692H 0.10 tolerated(0.11) benign(0.363) TCGA-AY-6197-01 11 130332615 130332615 C T ADAMTS15 Silent p.G494G 0.36 TCGA-AY-6197-01 11 132290059 132290059 C T OPCML 3'UTR 0.35 TCGA-AY-6197-01 11 14276165 14276165 G A SPON1 RNA 0.14 TCGA-AY-6197-01 11 1466880 1466880 C - BRSK2 Frame_Shift_Del p.R401Gfs*4 0.34 TCGA-AY-6197-01 11 16133368 16133369 - G SOX6 Frame_Shift_Ins p.G294Wfs*8 0.26 TCGA-AY-6197-01 11 16812647 16812647 G A PLEKHA7 Missense_Mutation p.R949W 0.35 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 11 17741737 17741737 G A MYOD1 Silent p.T136T 0.10 TCGA-AY-6197-01 11 18231935 18231935 A G RP11-113D6.10 3'UTR 0.23 TCGA-AY-6197-01 11 18725912 18725912 A G TMEM86A 3'UTR 0.22 TCGA-AY-6197-01 11 1902786 1902786 C - LSP1 Frame_Shift_Del p.Q236Sfs*31 0.46 TCGA-AY-6197-01 11 22360167 22360167 T C SLC17A6 Splice_Site p.X29_splice 0.15 TCGA-AY-6197-01 11 27390511 27390511 T C LGR4 Missense_Mutation p.M587V 0.28 deleterious(0.02) benign(0.042) TCGA-AY-6197-01 11 28352066 28352066 C T METTL15 Missense_Mutation p.T301M 0.23 tolerated(0.21) benign(0.028) TCGA-AY-6197-01 11 33880858 33880858 C T LMO2 3'UTR 0.38 TCGA-AY-6197-01 11 35456256 35456256 T C PAMR1 Missense_Mutation p.D494G 0.07 tolerated(0.57) benign(0) TCGA-AY-6197-01 11 36598366 36598366 T - RAG1 3'UTR 0.19 TCGA-AY-6197-01 11 44331425 44331425 C T ALX4 Missense_Mutation p.R63Q 0.10 tolerated_low_confidence(0.06) benign(0.063) TCGA-AY-6197-01 11 44952419 44952420 AG - TSPAN18 3'UTR 0.36 TCGA-AY-6197-01 11 45946372 45946372 A G GYLTL1B Missense_Mutation p.D234G 0.19 deleterious(0.01) benign(0.371) TCGA-AY-6197-01 11 46679118 46679118 A G ATG13 Missense_Mutation p.H214R 0.05 deleterious(0) benign(0.115) TCGA-AY-6197-01 11 46702223 46702223 A - ARHGAP1 Frame_Shift_Del p.L237Rfs*135 0.39 TCGA-AY-6197-01 11 4674217 4674217 G - OR51E1 Frame_Shift_Del p.A156Lfs*3 0.32 TCGA-AY-6197-01 11 4676171 4676171 G A OR51E1 3'UTR 0.31 TCGA-AY-6197-01 11 46789159 46789159 T - CKAP5 Frame_Shift_Del p.K1126Rfs*25 0.33 TCGA-AY-6197-01 11 46880747 46880747 G C LRP4 Silent p.G1835G 0.39 TCGA-AY-6197-01 11 47199595 47199595 C - PACSIN3 Frame_Shift_Del p.E388Rfs*4 0.31 TCGA-AY-6197-01 11 47357491 47357491 G A MYBPC3 Missense_Mutation p.P892S 0.34 deleterious(0.01) benign(0.261) TCGA-AY-6197-01 11 49974342 49974342 C T OR4C13 Missense_Mutation p.A123V 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-AY-6197-01 11 55339971 55339971 A G OR4C16 Missense_Mutation p.D123G 0.35 deleterious(0.01) benign(0) TCGA-AY-6197-01 11 5536171 5536171 A G UBQLNL 3'UTR 0.17 TCGA-AY-6197-01 11 57003698 57003698 A G APLNR Missense_Mutation p.W261R 0.15 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 11 57135493 57135493 T C P2RX3 Missense_Mutation p.Y285H 0.35 deleterious(0.04) benign(0.443) TCGA-AY-6197-01 11 60901524 60901524 C T VPS37C Silent p.E83E 0.46 TCGA-AY-6197-01 11 609628 609628 C - PHRF1 Frame_Shift_Del p.L1392Cfs*8 0.33 TCGA-AY-6197-01 11 61070070 61070070 C T DDB1 Silent p.T1032T 0.23 TCGA-AY-6197-01 11 62349030 62349030 G - TUT1 Frame_Shift_Del p.G179Efs*13 0.12 TCGA-AY-6197-01 11 624585 624585 A G CDHR5 Missense_Mutation p.L78P 0.34 deleterious(0) probably_damaging(0.991) TCGA-AY-6197-01 11 62752078 62752078 G A SLC22A6 Missense_Mutation p.L29F 0.26 tolerated(0.16) benign(0.033) TCGA-AY-6197-01 11 63764561 63764561 G C OTUB1 Missense_Mutation p.V155L 0.39 tolerated(1) benign(0) TCGA-AY-6197-01 11 63885667 63885667 G A FLRT1 Missense_Mutation p.G643D 0.28 deleterious(0) probably_damaging(0.927) TCGA-AY-6197-01 11 64402856 64402856 G T NRXN2 Missense_Mutation p.P1158T 0.12 deleterious(0) probably_damaging(0.984) TCGA-AY-6197-01 11 64662599 64662599 C - ATG2A Frame_Shift_Del p.G1888Afs*2 0.30 TCGA-AY-6197-01 11 6541658 6541658 T C DNHD1 Intron 0.14 TCGA-AY-6197-01 11 65632737 65632737 G A MUS81 Missense_Mutation p.R483H 0.13 tolerated(0.28) benign(0.004) TCGA-AY-6197-01 11 65688958 65688958 G - DRAP1 3'UTR 0.32 TCGA-AY-6197-01 11 65988190 65988190 A G PACS1 Missense_Mutation p.Y376C 0.06 tolerated(0.17) benign(0.046) TCGA-AY-6197-01 11 66254090 66254090 G A DPP3 Missense_Mutation p.C147Y 0.45 tolerated(0.05) possibly_damaging(0.785) TCGA-AY-6197-01 11 6651054 6651054 C T DCHS1 Silent p.P1628P 0.08 TCGA-AY-6197-01 11 67186248 67186248 C - CARNS1 Frame_Shift_Del p.P130Lfs*4 0.50 TCGA-AY-6197-01 11 67200475 67200475 C T RPS6KB2 Silent p.G223G 0.30 TCGA-AY-6197-01 11 6913411 6913411 A - OR2D2 Frame_Shift_Del p.F107Lfs*11 0.17 TCGA-AY-6197-01 11 70319062 70319062 T G SHANK2 Missense_Mutation p.Q1822P 0.13 deleterious(0.03) benign(0.418) TCGA-AY-6197-01 11 71259625 71259625 C T KRTAP5-9 5'UTR 0.40 TCGA-AY-6197-01 11 76072013 76072013 C T PRKRIR Missense_Mutation p.R102Q 0.37 tolerated(0.08) benign(0.067) TCGA-AY-6197-01 11 78381093 78381093 G A TENM4 Silent p.N2099N 0.33 TCGA-AY-6197-01 11 78525373 78525373 G A TENM4 Silent p.C583C 0.10 TCGA-AY-6197-01 11 78565255 78565255 G A TENM4 Silent p.S525S 0.31 TCGA-AY-6197-01 11 7981740 7981740 A - NLRP10 Frame_Shift_Del p.H474Mfs*7 0.12 TCGA-AY-6197-01 11 82708448 82708448 G - RAB30 Intron 0.35 TCGA-AY-6197-01 11 87032257 87032257 A G TMEM135 Missense_Mutation p.N420S 0.46 tolerated(0.45) probably_damaging(0.967) TCGA-AY-6197-01 11 8751517 8751517 A G ST5 Silent p.G440G 0.10 TCGA-AY-6197-01 11 88242532 88242532 G A GRM5 Missense_Mutation p.T956M 0.42 tolerated_low_confidence(0.18) benign(0.439) TCGA-AY-6197-01 11 9168575 9168575 A G DENND5A Splice_Site p.X953_splice 0.38 TCGA-AY-6197-01 11 93470258 93470260 CAT - TAF1D In_Frame_Del p.D202del 0.36 TCGA-AY-6197-01 11 93494782 93494782 A G C11orf54 Silent p.G242G 0.27 TCGA-AY-6197-01 11 93844153 93844153 A G HEPHL1 Missense_Mutation p.T1044A 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-AY-6197-01 11 94353187 94353187 G - PIWIL4 Frame_Shift_Del p.V774Wfs*21 0.14 TCGA-AY-6197-01 11 9549324 9549324 A T ZNF143 3'UTR 0.23 TCGA-AY-6197-01 12 100732522 100732522 G A SCYL2 Missense_Mutation p.V788I 0.18 tolerated(0.93) benign(0.002) TCGA-AY-6197-01 12 100774538 100774538 C T SLC17A8 Missense_Mutation p.P54L 0.44 deleterious(0.03) possibly_damaging(0.509) TCGA-AY-6197-01 12 101577914 101577914 T C SLC5A8 Silent p.L350L 0.40 TCGA-AY-6197-01 12 105420433 105420433 T C ALDH1L2 Missense_Mutation p.Y869C 0.16 deleterious(0.05) probably_damaging(0.995) TCGA-AY-6197-01 12 105456787 105456787 T C ALDH1L2 Missense_Mutation p.Y267C 0.10 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-AY-6197-01 12 109684056 109684056 G A ACACB Missense_Mutation p.G1792S 0.21 tolerated(0.37) benign(0.004) TCGA-AY-6197-01 12 111731283 111731283 C T CUX2 Missense_Mutation p.T157M 0.41 tolerated(0.13) possibly_damaging(0.678) TCGA-AY-6197-01 12 112580045 112580045 G A TRAFD1 Missense_Mutation p.V266I 0.32 tolerated(0.5) benign(0.015) TCGA-AY-6197-01 12 114823367 114823367 C T TBX5 Silent p.T223T 0.39 TCGA-AY-6197-01 12 120117793 120117793 C T PRKAB1 Missense_Mutation p.A241V 0.36 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 12 120750417 120750417 C T SIRT4 Missense_Mutation p.T219I 0.13 tolerated(0.23) benign(0.01) TCGA-AY-6197-01 12 120901843 120901843 C A SRSF9 Missense_Mutation p.K144N 0.06 deleterious(0.02) possibly_damaging(0.83) TCGA-AY-6197-01 12 121678620 121678620 C - CAMKK2 Frame_Shift_Del p.G550Efs*7 0.31 TCGA-AY-6197-01 12 122242658 122242658 C - SETD1B Frame_Shift_Del p.H8Tfs*27 0.31 TCGA-AY-6197-01 12 123087619 123087620 - A KNTC1 Frame_Shift_Ins p.L1647Tfs*12 0.26 TCGA-AY-6197-01 12 123105188 123105188 G T KNTC1 Intron 0.36 TCGA-AY-6197-01 12 123915159 123915160 - T RILPL2 Frame_Shift_Ins p.N129Kfs*57 0.09 TCGA-AY-6197-01 12 124809876 124809876 C - NCOR2 3'UTR 0.34 TCGA-AY-6197-01 12 130856192 130856192 T - PIWIL1 3'UTR 0.23 TCGA-AY-6197-01 12 131476861 131476861 T C GPR133 Missense_Mutation p.L297P 0.41 deleterious(0) probably_damaging(0.982) TCGA-AY-6197-01 12 132398313 132398313 G T ULK1 Silent p.A393A 0.43 TCGA-AY-6197-01 12 132400973 132400973 C A ULK1 Missense_Mutation p.P637T 0.39 tolerated(0.1) probably_damaging(0.998) TCGA-AY-6197-01 12 132402066 132402066 C - ULK1 Frame_Shift_Del p.Q767Rfs*57 0.30 TCGA-AY-6197-01 12 133202348 133202348 C T POLE Silent p.A2180A 0.37 TCGA-AY-6197-01 12 1920939 1920939 A - CACNA2D4 Intron 0.19 TCGA-AY-6197-01 12 2062061 2062061 C T DCP1B Missense_Mutation p.A349T 0.35 tolerated(0.59) benign(0.014) TCGA-AY-6197-01 12 21623291 21623301 AAAAAAAAAAC - PYROXD1 3'UTR 0.17 TCGA-AY-6197-01 12 21926615 21926615 G A KCNJ8 5'UTR 0.33 TCGA-AY-6197-01 12 25362720 25362720 A - KRAS 3'UTR 0.11 TCGA-AY-6197-01 12 2602515 2602515 G A CACNA1C Missense_Mutation p.C359Y 0.08 deleterious(0) probably_damaging(0.996) TCGA-AY-6197-01 12 26809387 26809387 G A ITPR2 Missense_Mutation p.R763W 0.34 deleterious(0.01) probably_damaging(0.932) TCGA-AY-6197-01 12 29659712 29659712 C A TMTC1 3'Flank 0.41 TCGA-AY-6197-01 12 3047449 3047449 A T TULP3 Missense_Mutation p.D398V 0.07 deleterious(0) probably_damaging(0.975) TCGA-AY-6197-01 12 39734129 39734129 T - KIF21A Frame_Shift_Del p.V717Lfs*12 0.29 TCGA-AY-6197-01 12 41323783 41323783 C A CNTN1 Missense_Mutation p.P228T 0.34 tolerated(0.12) benign(0.22) TCGA-AY-6197-01 12 42860028 42860028 G A PRICKLE1 Missense_Mutation p.A248V 0.23 deleterious(0.01) possibly_damaging(0.777) TCGA-AY-6197-01 12 43821185 43821185 C T ADAMTS20 Missense_Mutation p.A1345T 0.20 tolerated(0.62) benign(0.009) TCGA-AY-6197-01 12 4479417 4479417 C A FGF23 3'UTR 0.21 TCGA-AY-6197-01 12 45269388 45269388 C T NELL2 Intron 0.22 TCGA-AY-6197-01 12 46322275 46322275 A G SCAF11 Silent p.N403N 0.07 TCGA-AY-6197-01 12 4721735 4721735 C T DYRK4 Missense_Mutation p.P391L 0.23 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 12 49227205 49227205 C A DDX23 Missense_Mutation p.R553M 0.20 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 12 49431930 49431930 A G KMT2D Missense_Mutation p.L3070P 0.13 probably_damaging(0.997) TCGA-AY-6197-01 12 49439922 49439922 T C KMT2D Missense_Mutation p.E1540G 0.44 probably_damaging(0.993) TCGA-AY-6197-01 12 50501426 50501426 T C GPD1 Missense_Mutation p.L230P 0.33 deleterious(0) probably_damaging(0.998) TCGA-AY-6197-01 12 50794782 50794782 G A LARP4 5'UTR 0.38 TCGA-AY-6197-01 12 51852389 51852389 A - SLC4A8 Frame_Shift_Del p.N272Mfs*3 0.30 TCGA-AY-6197-01 12 51853753 51853753 A - SLC4A8 Frame_Shift_Del p.I294Ffs*26 0.23 TCGA-AY-6197-01 12 52680108 52680108 G A KRT81 Silent p.C483C 0.14 TCGA-AY-6197-01 12 52841742 52841742 C T KRT6B Missense_Mutation p.R415H 0.39 deleterious(0.05) possibly_damaging(0.666) TCGA-AY-6197-01 12 53666555 53666555 G A ESPL1 Missense_Mutation p.A474T 0.33 tolerated(0.14) benign(0.009) TCGA-AY-6197-01 12 55422278 55422278 A C NEUROD4 3'UTR 0.39 TCGA-AY-6197-01 12 55422672 55422673 - T NEUROD4 3'UTR 0.29 TCGA-AY-6197-01 12 56088406 56088406 C T ITGA7 Missense_Mutation p.G761D 0.13 tolerated(0.78) benign(0.096) TCGA-AY-6197-01 12 56481845 56481845 G A ERBB3 Missense_Mutation p.R258H 0.41 tolerated(0.13) benign(0.001) TCGA-AY-6197-01 12 56487277 56487277 C T ERBB3 Missense_Mutation p.R475W 0.46 deleterious(0.01) possibly_damaging(0.824) TCGA-AY-6197-01 12 56639332 56639332 C T ANKRD52 Missense_Mutation p.A745T 0.35 deleterious(0) probably_damaging(0.991) TCGA-AY-6197-01 12 56704348 56704348 A G CNPY2 Silent p.H179H 0.29 TCGA-AY-6197-01 12 5685144 5685144 C T ANO2 Missense_Mutation p.R826H 0.40 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 12 57578973 57578973 C T LRP1 Missense_Mutation p.R2150W 0.44 possibly_damaging(0.852) TCGA-AY-6197-01 12 57663129 57663129 A G R3HDM2 Missense_Mutation p.L550P 0.38 deleterious(0.03) possibly_damaging(0.845) TCGA-AY-6197-01 12 57870189 57870189 C T ARHGAP9 Silent p.V358V 0.39 TCGA-AY-6197-01 12 58020648 58020648 C A B4GALNT1 Missense_Mutation p.R494M 0.06 tolerated(0.12) benign(0.039) TCGA-AY-6197-01 12 58190297 58190297 G - TSFM Frame_Shift_Del p.V326Cfs*3 0.35 TCGA-AY-6197-01 12 59307785 59307785 C T LRIG3 Missense_Mutation p.A121T 0.42 tolerated(0.14) benign(0.008) TCGA-AY-6197-01 12 6174359 6174359 G T VWF Missense_Mutation p.L413M 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-AY-6197-01 12 6346986 6346986 A G CD9 Missense_Mutation p.M227V 0.24 tolerated(0.94) benign(0.009) TCGA-AY-6197-01 12 64609516 64609516 T C C12orf66 Missense_Mutation p.I155V 0.25 tolerated(0.64) benign(0.007) TCGA-AY-6197-01 12 665773 665773 T G B4GALNT3 Silent p.G707G 0.41 TCGA-AY-6197-01 12 6935869 6935869 C T GPR162 Missense_Mutation p.P423S 0.39 tolerated(0.77) benign(0.091) TCGA-AY-6197-01 12 69965897 69965897 G A FRS2 Splice_Site p.X138_splice 0.37 TCGA-AY-6197-01 12 7084462 7084462 G A EMG1 Silent p.P180P 0.34 TCGA-AY-6197-01 12 70949794 70949794 A G PTPRB Missense_Mutation p.F1617L 0.12 deleterious(0.02) probably_damaging(0.916) TCGA-AY-6197-01 12 71031202 71031202 C T PTPRB 5'UTR 0.16 TCGA-AY-6197-01 12 7280920 7280920 G A RBP5 Silent p.S56S 0.27 TCGA-AY-6197-01 12 75444875 75444875 A - KCNC2 Frame_Shift_Del p.S304Hfs*12 0.26 TCGA-AY-6197-01 12 78388636 78388636 A - NAV3 Frame_Shift_Del p.K244Sfs*26 0.11 TCGA-AY-6197-01 12 80762042 80762042 G A OTOGL Missense_Mutation p.V2181I 0.36 tolerated(0.49) benign(0.007) TCGA-AY-6197-01 12 81283028 81283028 A G LIN7A Splice_Site p.X67_splice 0.09 TCGA-AY-6197-01 12 81283094 81283094 G T LIN7A Missense_Mutation p.P46Q 0.33 deleterious(0.03) benign(0.215) TCGA-AY-6197-01 12 81331413 81331418 CCCTTA - LIN7A Splice_Site p.X28_splice 0.46 TCGA-AY-6197-01 12 86373797 86373797 G A MGAT4C Missense_Mutation p.A236V 0.23 tolerated(0.21) benign(0.02) TCGA-AY-6197-01 12 9021138 9021139 - G A2ML1 Frame_Shift_Ins p.S1358Efs*3 0.27 TCGA-AY-6197-01 12 91348307 91348307 G A CCER1 Silent p.H71H 0.48 TCGA-AY-6197-01 12 96350526 96350526 C T AMDHD1 Missense_Mutation p.R125C 0.11 tolerated(0.29) benign(0.001) TCGA-AY-6197-01 13 100181814 100181814 A - TM9SF2 Frame_Shift_Del p.S145Afs*4 0.24 TCGA-AY-6197-01 13 108883211 108883211 G T ABHD13 3'UTR 0.30 TCGA-AY-6197-01 13 108884232 108884232 A G ABHD13 3'UTR 0.32 TCGA-AY-6197-01 13 109472756 109472756 G A MYO16 Silent p.A291A 0.25 TCGA-AY-6197-01 13 110435990 110435990 C A IRS2 Missense_Mutation p.S804I 0.28 tolerated(0.38) possibly_damaging(0.854) TCGA-AY-6197-01 13 111870123 111870123 T C ARHGEF7 Missense_Mutation p.V210A 0.10 deleterious(0) benign(0.216) TCGA-AY-6197-01 13 113838720 113838720 T C PCID2 Missense_Mutation p.R263G 0.12 deleterious(0.03) possibly_damaging(0.66) TCGA-AY-6197-01 13 114549537 114549537 C T GAS6 Silent p.P102P 0.24 TCGA-AY-6197-01 13 115002165 115002168 CTCT - CDC16 Frame_Shift_Del p.S33Vfs*16 0.09 TCGA-AY-6197-01 13 115090767 115090767 T - CHAMP1 Frame_Shift_Del p.F485Lfs*100 0.24 TCGA-AY-6197-01 13 115091413 115091413 C T CHAMP1 Missense_Mutation p.A699V 0.23 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 13 24438310 24438310 A G MIPEP Missense_Mutation p.L321P 0.16 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 13 31711156 31711156 T - HSPH1 3'UTR 0.20 TCGA-AY-6197-01 13 32811623 32811623 C A FRY Missense_Mutation p.A1973D 0.27 tolerated(0.34) benign(0.044) TCGA-AY-6197-01 13 33684168 33684168 G - STARD13 Frame_Shift_Del p.S964Qfs*4 0.25 TCGA-AY-6197-01 13 34405483 34405483 T C RFC3 Silent p.T267T 0.15 TCGA-AY-6197-01 13 39262533 39262533 C A FREM2 Missense_Mutation p.P351H 0.29 tolerated(0.06) benign(0.002) TCGA-AY-6197-01 13 39596515 39596515 C T PROSER1 Silent p.A226A 0.23 TCGA-AY-6197-01 13 39952652 39952652 C T LHFP Missense_Mutation p.G133S 0.17 tolerated(0.73) possibly_damaging(0.551) TCGA-AY-6197-01 13 42185865 42185865 C - VWA8 Frame_Shift_Del p.G1575Efs*53 0.28 TCGA-AY-6197-01 13 45148948 45148948 T - TSC22D1 Frame_Shift_Del p.G422Vfs*22 0.23 TCGA-AY-6197-01 13 45563700 45563700 C A GPALPP1 5'Flank 0.16 TCGA-AY-6197-01 13 45602160 45602160 A G GPALPP1 Intron 0.29 TCGA-AY-6197-01 13 48615241 48615241 A - NUDT15 Frame_Shift_Del p.N117Mfs*25 0.25 TCGA-AY-6197-01 13 58208651 58208651 C A PCDH17 Silent p.P657P 0.30 TCGA-AY-6197-01 13 67800274 67800274 G T PCDH9 Missense_Mutation p.L767I 0.26 tolerated(0.9) benign(0.027) TCGA-AY-6197-01 13 76395394 76395394 A G LMO7 Silent p.R530R 0.17 TCGA-AY-6197-01 13 77635825 77635825 T C MYCBP2 Missense_Mutation p.H4254R 0.24 probably_damaging(0.942) TCGA-AY-6197-01 13 88328189 88328189 T C SLITRK5 Silent p.L182L 0.06 TCGA-AY-6197-01 13 95696033 95696033 T C ABCC4 Missense_Mutation p.E1213G 0.26 tolerated(0.05) benign(0.008) TCGA-AY-6197-01 13 96579474 96579474 A G UGGT2 Silent p.S698S 0.07 TCGA-AY-6197-01 14 101198458 101198458 C A DLK1 Silent p.S114S 0.33 TCGA-AY-6197-01 14 102463483 102463483 C T DYNC1H1 Missense_Mutation p.R1226W 0.15 possibly_damaging(0.773) TCGA-AY-6197-01 14 102510968 102510968 C T DYNC1H1 Silent p.P4313P 0.20 TCGA-AY-6197-01 14 102675186 102675186 G T WDR20 Missense_Mutation p.A258S 0.30 tolerated(0.09) possibly_damaging(0.789) TCGA-AY-6197-01 14 102676049 102676049 T C WDR20 Silent p.C545C 0.10 TCGA-AY-6197-01 14 103573181 103573181 C T EXOC3L4 Missense_Mutation p.T509M 0.42 deleterious(0.05) benign(0.01) TCGA-AY-6197-01 14 105174013 105174013 C - INF2 Frame_Shift_Del p.P472Qfs*86 0.32 TCGA-AY-6197-01 14 105461115 105461115 C T C14orf79 3'UTR 0.43 TCGA-AY-6197-01 14 106330434 106330434 C T IGHJ4 Missense_Mutation p.V13I 0.22 benign(0.014) TCGA-AY-6197-01 14 106452872 106452872 G A IGHV1-2 Silent p.G50G 0.37 TCGA-AY-6197-01 14 19563232 19563232 T C POTEG Intron 0.35 TCGA-AY-6197-01 14 20296081 20296081 C T OR4N2 Silent p.I158I 0.04 TCGA-AY-6197-01 14 20846338 20846338 C - TEP1 Frame_Shift_Del p.V1856Lfs*45 0.42 TCGA-AY-6197-01 14 21896333 21896333 T C CHD8 Silent p.S432S 0.24 TCGA-AY-6197-01 14 22102578 22102578 T C OR10G2 Missense_Mutation p.M141V 0.12 deleterious(0.01) benign(0.126) TCGA-AY-6197-01 14 24661935 24661935 C A TM9SF1 Missense_Mutation p.D296Y 0.36 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 14 24737134 24737134 C T RABGGTA Missense_Mutation p.R393Q 0.13 tolerated(0.07) probably_damaging(0.998) TCGA-AY-6197-01 14 24775708 24775708 T A CIDEB Missense_Mutation p.N70Y 0.41 deleterious(0.03) benign(0.093) TCGA-AY-6197-01 14 24795358 24795358 G - ADCY4 Frame_Shift_Del p.R528Gfs*3 0.31 TCGA-AY-6197-01 14 29237033 29237033 C T FOXG1 Missense_Mutation p.P183L 0.42 deleterious(0) probably_damaging(0.976) TCGA-AY-6197-01 14 36190907 36190907 C T RALGAPA1 Silent p.R751R 0.34 TCGA-AY-6197-01 14 38724742 38724742 G A CLEC14A Silent p.C162C 0.36 TCGA-AY-6197-01 14 45686249 45686253 TGTAC - MIS18BP1 Frame_Shift_Del p.S991Nfs*17 0.36 TCGA-AY-6197-01 14 50606688 50606688 T C SOS2 Silent p.S919S 0.31 TCGA-AY-6197-01 14 51211027 51211027 G A NIN Silent p.S1707S 0.14 TCGA-AY-6197-01 14 52907320 52907320 C T TXNDC16 Silent p.Q655Q 0.41 TCGA-AY-6197-01 14 55881108 55881109 - A TBPL2 Frame_Shift_Ins p.K373* 0.29 TCGA-AY-6197-01 14 60616897 60616897 A - DHRS7 Frame_Shift_Del p.F214Lfs*14 0.21 TCGA-AY-6197-01 14 61115727 61115727 C T SIX1 Missense_Mutation p.G61S 0.08 deleterious(0) benign(0.371) TCGA-AY-6197-01 14 63175164 63175164 G A KCNH5 Missense_Mutation p.R677C 0.42 deleterious(0) probably_damaging(0.996) TCGA-AY-6197-01 14 64689930 64689930 A G SYNE2 Silent p.E6738E 0.38 TCGA-AY-6197-01 14 68029015 68029015 C A PLEKHH1 Missense_Mutation p.L223M 0.26 tolerated_low_confidence(0.17) possibly_damaging(0.45) TCGA-AY-6197-01 14 69520635 69520635 C T DCAF5 Missense_Mutation p.R923Q 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-AY-6197-01 14 74428481 74428481 C T COQ6 Missense_Mutation p.R418C 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-AY-6197-01 14 77274422 77274422 C T ANGEL1 Missense_Mutation p.G240D 0.77 tolerated(0.17) benign(0.01) TCGA-AY-6197-01 14 86092726 86092726 A - FLRT2 3'UTR 0.30 TCGA-AY-6197-01 14 88904507 88904507 A C SPATA7 Missense_Mutation p.N514T 0.23 tolerated(0.08) benign(0.23) TCGA-AY-6197-01 14 89124674 89124674 C T EML5 Missense_Mutation p.R1245H 0.08 deleterious(0) probably_damaging(0.992) TCGA-AY-6197-01 14 89178613 89178613 A G EML5 Splice_Site p.X553_splice 0.05 TCGA-AY-6197-01 14 90734664 90734664 G T PSMC1 Missense_Mutation p.G263V 0.25 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 14 90783061 90783061 T - NRDE2 Frame_Shift_Del p.R90Gfs*69 0.14 TCGA-AY-6197-01 14 91196504 91196504 G A TTC7B Missense_Mutation p.P205S 0.38 tolerated(0.46) possibly_damaging(0.642) TCGA-AY-6197-01 14 92491745 92491745 A C TRIP11 Missense_Mutation p.L74R 0.20 deleterious(0.05) possibly_damaging(0.757) TCGA-AY-6197-01 14 93397924 93397926 GAG - CHGA In_Frame_Del p.E236del 0.49 TCGA-AY-6197-01 14 95556791 95556792 - T DICER1 3'UTR 0.29 TCGA-AY-6197-01 14 99865345 99865345 G A SETD3 Missense_Mutation p.R486W 0.37 deleterious(0) possibly_damaging(0.865) TCGA-AY-6197-01 15 101110185 101110185 T A LINS Missense_Mutation p.D511V 0.41 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 15 22945081 22945081 C T CYFIP1 Silent p.D384D 0.10 TCGA-AY-6197-01 15 28386620 28386620 G T HERC2 Silent p.I3991I 0.32 TCGA-AY-6197-01 15 34038291 34038291 G A RYR3 Missense_Mutation p.G2641E 0.17 possibly_damaging(0.889) TCGA-AY-6197-01 15 34130952 34130952 G A RYR3 Silent p.E4257E 0.33 TCGA-AY-6197-01 15 34434323 34434323 T C KATNBL1 3'UTR 0.33 TCGA-AY-6197-01 15 40259877 40259877 C T EIF2AK4 Silent p.L450L 0.48 TCGA-AY-6197-01 15 40648424 40648424 C - PHGR1 Frame_Shift_Del p.H59Tfs*49 0.47 TCGA-AY-6197-01 15 40951618 40951618 A G CASC5 Silent p.V2291V 0.07 TCGA-AY-6197-01 15 41146715 41146715 A - SPINT1 Frame_Shift_Del p.K371Nfs*82 0.31 TCGA-AY-6197-01 15 41195209 41195209 T C VPS18 Silent p.P864P 0.37 TCGA-AY-6197-01 15 42052728 42052728 G T MGA Splice_Site p.X2466_splice 0.38 TCGA-AY-6197-01 15 43545020 43545020 C T TGM5 Missense_Mutation p.A267T 0.12 tolerated(0.09) benign(0.099) TCGA-AY-6197-01 15 43622774 43622774 A - LCMT2 5'UTR 0.35 TCGA-AY-6197-01 15 45490988 45490989 - T SHF Frame_Shift_Ins p.D95Efs*19 0.38 TCGA-AY-6197-01 15 49254727 49254727 C T SHC4 Silent p.S162S 0.34 TCGA-AY-6197-01 15 51503100 51503100 T A CYP19A1 Nonsense_Mutation p.K473* 0.38 TCGA-AY-6197-01 15 51780207 51780207 A G DMXL2 Missense_Mutation p.F1721L 0.37 deleterious(0) probably_damaging(0.995) TCGA-AY-6197-01 15 56208643 56208643 A G NEDD4 Silent p.D129D 0.14 TCGA-AY-6197-01 15 56721176 56721178 TGA - MNS1 3'UTR 0.18 TCGA-AY-6197-01 15 58285001 58285001 C T ALDH1A2 Missense_Mutation p.G234R 0.26 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 15 59368347 59368347 G A RNF111 Silent p.A627A 0.07 TCGA-AY-6197-01 15 64967006 64967006 G T ZNF609 Missense_Mutation p.K651N 0.28 deleterious(0) probably_damaging(0.988) TCGA-AY-6197-01 15 64980952 64980952 A G OAZ2 Missense_Mutation p.V174A 0.25 tolerated(0.64) possibly_damaging(0.68) TCGA-AY-6197-01 15 65411023 65411023 G A PDCD7 3'UTR 0.41 TCGA-AY-6197-01 15 66031086 66031086 A T DENND4A Silent p.P253P 0.21 TCGA-AY-6197-01 15 66624358 66624358 G T DIS3L Missense_Mutation p.R894M 0.19 deleterious(0) possibly_damaging(0.897) TCGA-AY-6197-01 15 68497593 68497593 C T CALML4 Missense_Mutation p.G41D 0.14 tolerated(0.1) benign(0.001) TCGA-AY-6197-01 15 71124450 71124450 T C LARP6 Missense_Mutation p.R473G 0.27 tolerated(0.09) possibly_damaging(0.698) TCGA-AY-6197-01 15 71197006 71197006 T G LRRC49 Missense_Mutation p.S143A 0.22 deleterious(0.01) benign(0.013) TCGA-AY-6197-01 15 71704113 71704113 C - THSD4 Frame_Shift_Del p.C370Vfs*23 0.31 TCGA-AY-6197-01 15 73996625 73996625 T C CD276 Missense_Mutation p.V394A 0.08 deleterious(0) probably_damaging(0.983) TCGA-AY-6197-01 15 74276170 74276170 G A STOML1 3'UTR 0.17 TCGA-AY-6197-01 15 74653889 74653889 A G CYP11A1 Intron 0.28 TCGA-AY-6197-01 15 74751080 74751080 C T UBL7 Silent p.L43L 0.37 TCGA-AY-6197-01 15 76235771 76235771 C - NRG4 3'UTR 0.46 TCGA-AY-6197-01 15 76467949 76467949 C T C15orf27 Silent p.Y234Y 0.41 TCGA-AY-6197-01 15 79750338 79750338 C T KIAA1024 Missense_Mutation p.R617C 0.39 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.24 TCGA-AY-6197-01 15 80216445 80216445 C T C15ORF37 3'UTR 0.31 TCGA-AY-6197-01 15 80452784 80452784 A G FAH Missense_Mutation p.H116R 0.07 deleterious(0.03) benign(0.039) TCGA-AY-6197-01 15 81271633 81271633 T - MESDC2 Frame_Shift_Del p.K211Rfs*6 0.46 TCGA-AY-6197-01 15 81296263 81296263 T - MESDC1 3'UTR 0.35 TCGA-AY-6197-01 15 84255835 84255835 T C SH3GL3 Missense_Mutation p.M242T 0.30 tolerated(0.17) benign(0.001) TCGA-AY-6197-01 15 85341629 85341629 C T ZNF592 Missense_Mutation p.T887M 0.43 tolerated(0.23) benign(0.277) TCGA-AY-6197-01 15 86287042 86287042 G A AKAP13 Missense_Mutation p.R2797H 0.30 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 15 89444813 89444813 G A MFGE8 Missense_Mutation p.A280V 0.40 deleterious(0) probably_damaging(0.993) TCGA-AY-6197-01 15 90775481 90775481 G A CIB1 Silent p.F55F 0.42 TCGA-AY-6197-01 15 91491425 91491425 G A UNC45A Missense_Mutation p.G550D 0.30 deleterious(0) probably_damaging(0.998) TCGA-AY-6197-01 16 1248690 1248690 T C CACNA1H Missense_Mutation p.V240A 0.09 deleterious(0) probably_damaging(0.996) TCGA-AY-6197-01 16 14029521 14029521 G A ERCC4 Missense_Mutation p.V578M 0.40 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 16 15221615 15221615 G A RP11-1186N24.5 RNA 0.32 TCGA-AY-6197-01 16 15692788 15692788 G T KIAA0430 Missense_Mutation p.P1636H 0.49 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 16 16276439 16276439 C T ABCC6 Missense_Mutation p.V693M 0.39 deleterious(0.01) benign(0.359) TCGA-AY-6197-01 16 1817278 1817278 C T MAPK8IP3 Missense_Mutation p.P1072S 0.20 deleterious(0) probably_damaging(0.99) TCGA-AY-6197-01 16 20043588 20043588 G A GPR139 Silent p.T177T 0.37 TCGA-AY-6197-01 16 2011849 2011849 G A NDUFB10 Missense_Mutation p.R154K 0.38 tolerated(1) benign(0) TCGA-AY-6197-01 16 2026262 2026262 C T TBL3 Silent p.C413C 0.34 TCGA-AY-6197-01 16 2029505 2029505 G T NOXO1 Missense_Mutation p.R252S 0.08 tolerated(0.3) benign(0.12) TCGA-AY-6197-01 16 21658806 21658806 C T IGSF6 Silent p.V25V 0.45 TCGA-AY-6197-01 16 22337189 22337189 C A POLR3E Missense_Mutation p.L486M 0.41 tolerated(0.26) benign(0.002) TCGA-AY-6197-01 16 227422 227422 G A HBA1 3'UTR 0.23 TCGA-AY-6197-01 16 2290114 2290114 G A ECI1 Nonsense_Mutation p.R259* 0.45 TCGA-AY-6197-01 16 2329118 2329118 A G ABCA3 Missense_Mutation p.I1458T 0.16 deleterious(0.01) possibly_damaging(0.497) TCGA-AY-6197-01 16 23364254 23364254 A G SCNN1B Silent p.T148T 0.33 TCGA-AY-6197-01 16 23717679 23717679 C T ERN2 Silent p.A235A 0.39 TCGA-AY-6197-01 16 2510928 2510928 C - C16orf59 Frame_Shift_Del p.S105Afs*2 0.27 TCGA-AY-6197-01 16 28495377 28495378 CT - CLN3 Frame_Shift_Del p.S247Rfs*52 0.37 TCGA-AY-6197-01 16 28603641 28603641 A G SULT1A2 Missense_Mutation p.Y240H 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-AY-6197-01 16 28992830 28992830 T C SPNS1 Missense_Mutation p.F235L 0.42 tolerated(0.66) benign(0.006) TCGA-AY-6197-01 16 29824998 29824998 C - PRRT2 Frame_Shift_Del p.P210Qfs*19 0.41 TCGA-AY-6197-01 16 29853249 29853249 C T MVP Missense_Mutation p.P484S 0.11 deleterious(0) probably_damaging(0.994) TCGA-AY-6197-01 16 30096088 30096088 C A PPP4C Missense_Mutation p.R236S 0.18 deleterious(0) probably_damaging(0.989) TCGA-AY-6197-01 16 30369566 30369566 G A TBC1D10B Missense_Mutation p.T709I 0.06 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AY-6197-01 16 30777733 30777733 C T RNF40 Missense_Mutation p.R383W 0.36 deleterious(0.05) possibly_damaging(0.517) TCGA-AY-6197-01 16 31072705 31072706 - G ZNF668 Frame_Shift_Ins p.Q538Pfs*41 0.34 TCGA-AY-6197-01 16 31095980 31095980 T C PRSS53 Missense_Mutation p.R442G 0.35 tolerated(0.31) benign(0.01) TCGA-AY-6197-01 16 31485158 31485158 C T TGFB1I1 Missense_Mutation p.T62M 0.39 tolerated(0.25) probably_damaging(1) TCGA-AY-6197-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.14 TCGA-AY-6197-01 16 323532 323532 C T RGS11 Silent p.G177G 0.12 TCGA-AY-6197-01 16 32893998 32893998 C T RP11-989E6.3 5'Flank 0.33 TCGA-AY-6197-01 16 3304250 3304250 G A MEFV Missense_Mutation p.S273L 0.37 tolerated(0.54) benign(0.004) TCGA-AY-6197-01 16 4242067 4242067 G A SRL 3'UTR 0.33 TCGA-AY-6197-01 16 4245679 4245679 A G SRL Missense_Mutation p.L162P 0.39 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 16 4433366 4433366 A G VASN 3'UTR 0.30 TCGA-AY-6197-01 16 4626554 4626554 C T C16orf96 Silent p.A691A 0.37 TCGA-AY-6197-01 16 48250161 48250161 A G ABCC11 Missense_Mutation p.F272S 0.07 deleterious(0) probably_damaging(0.993) TCGA-AY-6197-01 16 49670812 49670812 G A ZNF423 Missense_Mutation p.R751C 0.37 deleterious(0) probably_damaging(0.981) TCGA-AY-6197-01 16 50354259 50354259 C T BRD7 Silent p.L553L 0.44 TCGA-AY-6197-01 16 5128823 5128823 T C ALG1 Missense_Mutation p.L269P 0.12 tolerated(0.25) benign(0.162) TCGA-AY-6197-01 16 53342762 53342762 A G CHD9 Silent p.V2390V 0.07 TCGA-AY-6197-01 16 55705695 55705695 G A SLC6A2 Intron 0.37 TCGA-AY-6197-01 16 55907794 55907794 G A CES5A Missense_Mutation p.P106S 0.21 tolerated(0.06) benign(0.444) TCGA-AY-6197-01 16 57103683 57103683 G A NLRC5 Intron 0.50 TCGA-AY-6197-01 16 57509803 57509803 A G DOK4 Missense_Mutation p.Y45H 0.11 deleterious(0) possibly_damaging(0.765) TCGA-AY-6197-01 16 57608775 57608775 C T GPR114 Silent p.Y419Y 0.12 TCGA-AY-6197-01 16 57693369 57693369 T C GPR56 Missense_Mutation p.L450P 0.24 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 16 58545559 58545559 T - NDRG4 3'UTR 0.39 TCGA-AY-6197-01 16 66919136 66919136 C T PDP2 Silent p.L317L 0.36 TCGA-AY-6197-01 16 66973261 66973261 G T CES2 Silent p.P205P 0.46 TCGA-AY-6197-01 16 67671655 67671655 A - CTCF Frame_Shift_Del p.E691Sfs*30 0.33 TCGA-AY-6197-01 16 67865169 67865169 T C CENPT Missense_Mutation p.D218G 0.24 deleterious(0.01) possibly_damaging(0.598) TCGA-AY-6197-01 16 67995476 67995476 A G SLC12A4 Splice_Site p.X116_splice 0.21 TCGA-AY-6197-01 16 68943158 68943158 T C TANGO6 Silent p.T615T 0.15 TCGA-AY-6197-01 16 70367556 70367556 A G DDX19B 3'UTR 0.32 TCGA-AY-6197-01 16 71887152 71887153 - C ATXN1L 3'UTR 0.32 TCGA-AY-6197-01 16 731503 731503 G A STUB1 Missense_Mutation p.A142T 0.42 deleterious(0) probably_damaging(0.99) TCGA-AY-6197-01 16 74943496 74943496 G - WDR59 Frame_Shift_Del p.L516Yfs*7 0.34 TCGA-AY-6197-01 16 75654607 75654607 A G ADAT1 Missense_Mutation p.W31R 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-AY-6197-01 16 76528812 76528812 A G CNTNAP4 Missense_Mutation p.T623A 0.12 tolerated(0.42) benign(0.003) TCGA-AY-6197-01 16 77232186 77232186 G A MON1B Missense_Mutation p.G542D 0.25 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AY-6197-01 16 78198081 78198081 G A WWOX Silent p.G137G 0.15 TCGA-AY-6197-01 16 816651 816651 G A MSLN Missense_Mutation p.R413Q 0.23 tolerated(1) benign(0.002) TCGA-AY-6197-01 16 86614505 86614505 G A FOXL1 3'UTR 0.36 TCGA-AY-6197-01 16 88499730 88499730 C T ZNF469 Missense_Mutation p.A1923V 0.17 possibly_damaging(0.875) TCGA-AY-6197-01 16 88502936 88502936 C T ZNF469 Missense_Mutation p.P2992S 0.25 probably_damaging(0.972) TCGA-AY-6197-01 16 88951542 88951542 G A CBFA2T3 Silent p.R343R 0.34 TCGA-AY-6197-01 16 89259946 89259946 G A CDH15 Missense_Mutation p.G642S 0.36 tolerated(0.21) benign(0.161) TCGA-AY-6197-01 16 89293953 89293953 A G ZNF778 Silent p.K391K 0.20 TCGA-AY-6197-01 16 89352575 89352575 C T ANKRD11 Missense_Mutation p.R255Q 0.34 probably_damaging(0.968) TCGA-AY-6197-01 16 89653484 89653484 A T CPNE7 Missense_Mutation p.M376L 0.15 tolerated(0.12) possibly_damaging(0.469) TCGA-AY-6197-01 16 89657644 89657644 C T CPNE7 Silent p.A501A 0.44 TCGA-AY-6197-01 16 89799934 89799934 C T ZNF276 Missense_Mutation p.T442M 0.39 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 16 90162311 90162311 T C TUBB8P7 RNA 0.08 TCGA-AY-6197-01 17 10210365 10210365 T A MYH13 Missense_Mutation p.N1729I 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-AY-6197-01 17 10440719 10440719 G T MYH2 Silent p.A576A 0.38 TCGA-AY-6197-01 17 11461276 11461276 C T SHISA6 Silent p.Y437Y 0.38 TCGA-AY-6197-01 17 14248938 14248938 C T HS3ST3B1 Missense_Mutation p.T383I 0.34 tolerated(0.09) benign(0.39) TCGA-AY-6197-01 17 15516134 15516134 A G RP11-385D13.1 Missense_Mutation p.S645P 0.27 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-AY-6197-01 17 15969005 15969005 G A NCOR1 Missense_Mutation p.A1582V 0.37 probably_damaging(0.99) TCGA-AY-6197-01 17 17057706 17057706 G A MPRIP Silent p.P484P 0.24 TCGA-AY-6197-01 17 17057713 17057713 G A MPRIP Missense_Mutation p.A487T 0.24 deleterious(0.04) benign(0.004) TCGA-AY-6197-01 17 18208511 18208511 G A TOP3A Silent p.R138R 0.09 TCGA-AY-6197-01 17 18250897 18250897 C T SHMT1 Silent p.P144P 0.40 TCGA-AY-6197-01 17 20906220 20906220 G T USP22 3'UTR 0.43 TCGA-AY-6197-01 17 21322640 21322640 G A KCNJ12 3'UTR 0.38 TCGA-AY-6197-01 17 2222169 2222169 A C SRR Missense_Mutation p.K115N 0.06 deleterious(0.03) probably_damaging(0.947) TCGA-AY-6197-01 17 26109127 26109127 G A NOS2 Silent p.F212F 0.41 TCGA-AY-6197-01 17 26948518 26948518 T C KIAA0100 Splice_Site p.X1654_splice 0.17 TCGA-AY-6197-01 17 27183317 27183317 A G ERAL1 Missense_Mutation p.M107V 0.39 deleterious(0.05) benign(0.045) TCGA-AY-6197-01 17 27401081 27401081 T C TIAF1 Missense_Mutation p.Q46R 0.10 tolerated_low_confidence(0.85) benign(0.145) TCGA-AY-6197-01 17 29552143 29552144 - T NF1 Frame_Shift_Ins p.Y628Lfs*6 0.17 TCGA-AY-6197-01 17 29553477 29553478 - C NF1 Frame_Shift_Ins p.I679Dfs*21 0.29 TCGA-AY-6197-01 17 29632524 29632524 G A EVI2B Missense_Mutation p.T35I 0.04 deleterious(0.04) probably_damaging(0.934) TCGA-AY-6197-01 17 30535361 30535361 A G RHOT1 Intron 0.40 TCGA-AY-6197-01 17 34916689 34916689 A G GGNBP2 Missense_Mutation p.T169A 0.23 tolerated(0.23) benign(0.055) TCGA-AY-6197-01 17 3493611 3493611 T G SHPK Missense_Mutation p.D227A 0.22 deleterious(0) possibly_damaging(0.884) TCGA-AY-6197-01 17 35470057 35470057 G T ACACA Silent p.R2140R 0.26 TCGA-AY-6197-01 17 38245656 38245656 A G THRA Intron 0.42 TCGA-AY-6197-01 17 38935837 38935837 T C KRT27 Missense_Mutation p.T297A 0.09 tolerated(1) benign(0.075) TCGA-AY-6197-01 17 3937472 3937472 C A ZZEF1 Missense_Mutation p.G2141C 0.14 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 17 39925801 39925801 G T JUP Missense_Mutation p.L113M 0.13 deleterious(0.02) benign(0.129) TCGA-AY-6197-01 17 40004458 40004458 G A KLHL10 Missense_Mutation p.A576T 0.11 deleterious(0.01) benign(0.028) TCGA-AY-6197-01 17 40277823 40277823 C T RAB5C Missense_Mutation p.R243Q 0.34 tolerated(0.27) benign(0.024) TCGA-AY-6197-01 17 40441547 40441547 A T STAT5A Missense_Mutation p.S40C 0.12 deleterious(0.01) possibly_damaging(0.759) TCGA-AY-6197-01 17 40695259 40695259 G A NAGLU Missense_Mutation p.G412E 0.45 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 17 42170838 42170838 G A HDAC5 Silent p.L125L 0.34 TCGA-AY-6197-01 17 42964095 42964095 A G EFTUD2 Silent p.D43D 0.10 TCGA-AY-6197-01 17 4349384 4349384 T C SPNS3 Silent p.T148T 0.15 TCGA-AY-6197-01 17 43906607 43906607 C T CRHR1 Silent p.V118V 0.37 TCGA-AY-6197-01 17 45219763 45219763 T - CDC27 Frame_Shift_Del p.I410Sfs*15 0.18 TCGA-AY-6197-01 17 45886559 45886559 C T OSBPL7 Missense_Mutation p.E685K 0.36 deleterious(0.02) benign(0.038) TCGA-AY-6197-01 17 45925574 45925574 C T SP6 Silent p.S74S 0.34 TCGA-AY-6197-01 17 46058859 46058859 C A CDK5RAP3 Silent p.T504T 0.33 TCGA-AY-6197-01 17 46135788 46135788 G - NFE2L1 Frame_Shift_Del p.G370Afs*44 0.25 TCGA-AY-6197-01 17 46196392 46196392 G A SNX11 Missense_Mutation p.S128N 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-AY-6197-01 17 46670937 46670937 A G HOXB5 Silent p.D36D 0.28 TCGA-AY-6197-01 17 48265334 48265334 C T COL1A1 Missense_Mutation p.G1091D 0.10 unknown(0) TCGA-AY-6197-01 17 48746848 48746848 G A ABCC3 Missense_Mutation p.E734K 0.07 tolerated(0.13) benign(0.017) TCGA-AY-6197-01 17 48777070 48777071 - G ANKRD40 Frame_Shift_Ins p.A157Cfs*33 0.28 TCGA-AY-6197-01 17 4883211 4883211 G A CAMTA2 Missense_Mutation p.P492L 0.43 deleterious_low_confidence(0.03) benign(0.066) TCGA-AY-6197-01 17 5286522 5286522 C A RABEP1 3'UTR 0.13 TCGA-AY-6197-01 17 55183368 55183368 C T AKAP1 Silent p.G181G 0.40 TCGA-AY-6197-01 17 59480512 59480512 A G TBX2 Missense_Mutation p.T252A 0.49 deleterious(0) probably_damaging(0.96) TCGA-AY-6197-01 17 60470961 60470961 T C EFCAB3 Missense_Mutation p.F160S 0.17 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 17 61957709 61957709 C T GH2 3'UTR 0.42 TCGA-AY-6197-01 17 62157058 62157058 C T ERN1 Silent p.L82L 0.32 TCGA-AY-6197-01 17 6493295 6493295 C T KIAA0753 Missense_Mutation p.E864K 0.30 tolerated(0.07) probably_damaging(0.986) TCGA-AY-6197-01 17 649638 649638 C T GEMIN4 Missense_Mutation p.V549M 0.37 deleterious(0.02) benign(0.446) TCGA-AY-6197-01 17 66270194 66270194 G C SLC16A6 Missense_Mutation p.L84V 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-AY-6197-01 17 66519036 66519036 C T PRKAR1A Missense_Mutation p.T106M 0.57 deleterious(0.04) benign(0.043) TCGA-AY-6197-01 17 68172925 68172925 G A KCNJ2 3'UTR 0.28 TCGA-AY-6197-01 17 68174799 68174799 G - KCNJ2 3'UTR 0.40 TCGA-AY-6197-01 17 6913367 6913367 G A ALOX12 Missense_Mutation p.M578I 0.41 tolerated(0.2) benign(0.416) TCGA-AY-6197-01 17 6945830 6945830 G - SLC16A11 Frame_Shift_Del p.P224Qfs*8 0.21 TCGA-AY-6197-01 17 7130430 7130430 G T DVL2 Missense_Mutation p.L508I 0.20 tolerated(0.16) possibly_damaging(0.542) TCGA-AY-6197-01 17 72741378 72741379 - G RAB37 Intron 0.36 TCGA-AY-6197-01 17 7324672 7324672 G A SPEM1 Silent p.A226A 0.41 TCGA-AY-6197-01 17 7329688 7329688 C T C17orf74 Silent p.R126R 0.22 TCGA-AY-6197-01 17 73491399 73491401 GGA - KIAA0195 In_Frame_Del p.E924del 0.36 TCGA-AY-6197-01 17 73492503 73492503 T C KIAA0195 Missense_Mutation p.L1065P 0.23 deleterious(0) benign(0.323) TCGA-AY-6197-01 17 73739794 73739794 C A ITGB4 Missense_Mutation p.A988D 0.35 deleterious(0.02) benign(0.026) TCGA-AY-6197-01 17 73919423 73919424 - G FBF1 Frame_Shift_Ins p.Q408Pfs*38 0.32 TCGA-AY-6197-01 17 74005674 74005674 C T EVPL Silent p.P1204P 0.07 TCGA-AY-6197-01 17 74900437 74900438 - C MGAT5B Frame_Shift_Ins p.L222Afs*133 0.29 TCGA-AY-6197-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.41 tolerated(0.11) benign(0.308) TCGA-AY-6197-01 17 76046980 76046980 A - TNRC6C Frame_Shift_Del p.N615Mfs*45 0.35 TCGA-AY-6197-01 17 7646391 7646391 G A DNAH2 Missense_Mutation p.R612Q 0.15 benign(0.015) TCGA-AY-6197-01 17 77768651 77768651 C T CBX8 Missense_Mutation p.G318E 0.15 deleterious(0.04) probably_damaging(0.931) TCGA-AY-6197-01 17 77924226 77924226 T G TBC1D16 Missense_Mutation p.E414A 0.34 deleterious(0.03) benign(0.019) TCGA-AY-6197-01 17 7798765 7798765 C - CHD3 Frame_Shift_Del p.R599Vfs*16 0.36 TCGA-AY-6197-01 17 7828431 7828431 G T KCNAB3 Silent p.P203P 0.16 TCGA-AY-6197-01 17 78327286 78327286 C T RNF213 Intron 0.48 TCGA-AY-6197-01 17 78968905 78968905 T C CHMP6 Missense_Mutation p.M87T 0.31 deleterious(0.03) benign(0.158) TCGA-AY-6197-01 17 7918754 7918754 G A GUCY2D Missense_Mutation p.V960M 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-AY-6197-01 17 79225119 79225119 T C SLC38A10 Intron 0.40 TCGA-AY-6197-01 17 79804502 79804502 G T P4HB Missense_Mutation p.L287M 0.38 deleterious(0.05) probably_damaging(0.962) TCGA-AY-6197-01 17 79826731 79826731 C A ARHGDIA 3'UTR 0.33 TCGA-AY-6197-01 17 7984601 7984601 G - AC129492.6 3'UTR 0.17 TCGA-AY-6197-01 17 80049354 80049354 G - FASN Frame_Shift_Del p.A413Hfs*39 0.39 TCGA-AY-6197-01 17 80130726 80130726 C A CCDC57 Missense_Mutation p.R506M 0.42 tolerated(0.14) benign(0.023) TCGA-AY-6197-01 17 80196672 80196674 CTT - SLC16A3 In_Frame_Del p.F408del 0.17 TCGA-AY-6197-01 17 8020131 8020131 A G ALOXE3 Silent p.I237I 0.42 TCGA-AY-6197-01 17 8052810 8052810 G T PER1 Missense_Mutation p.L275M 0.38 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 17 81052286 81052286 G - METRNL Frame_Shift_Del p.L303* 0.37 TCGA-AY-6197-01 17 8647918 8647918 C A CCDC42 Missense_Mutation p.G4C 0.23 deleterious(0.01) probably_damaging(1) TCGA-AY-6197-01 17 9460770 9460770 C T STX8 Missense_Mutation p.A65T 0.31 tolerated(0.05) probably_damaging(0.956) TCGA-AY-6197-01 17 9615301 9615301 C T USP43 Silent p.S729S 0.35 TCGA-AY-6197-01 17 9615323 9615323 C T USP43 Missense_Mutation p.R737W 0.41 deleterious(0) probably_damaging(0.993) TCGA-AY-6197-01 17 9801318 9801318 C T RCVRN 3'UTR 0.40 TCGA-AY-6197-01 18 10680257 10680257 T C PIEZO2 Missense_Mutation p.I2518V 0.14 deleterious(0.03) benign(0.012) TCGA-AY-6197-01 18 11854268 11854268 A T CHMP1B 3'UTR 0.25 TCGA-AY-6197-01 18 19995446 19995446 C T CTAGE1 3'UTR 0.26 TCGA-AY-6197-01 18 21095901 21095901 G A C18orf8 Missense_Mutation p.A164T 0.16 tolerated(0.39) benign(0) TCGA-AY-6197-01 18 22030921 22030921 G A IMPACT 3'UTR 0.12 TCGA-AY-6197-01 18 23866115 23866115 T G TAF4B Silent p.S414S 0.18 TCGA-AY-6197-01 18 2601452 2601452 A - NDC80 Frame_Shift_Del p.M480Wfs*7 0.21 TCGA-AY-6197-01 18 29104672 29104672 G T DSG2 Missense_Mutation p.G279W 0.08 deleterious(0.01) possibly_damaging(0.478) TCGA-AY-6197-01 18 31320168 31320168 T C ASXL3 Silent p.L934L 0.08 TCGA-AY-6197-01 18 31324653 31324653 T C ASXL3 Missense_Mutation p.M1614T 0.27 benign(0.001) TCGA-AY-6197-01 18 31599479 31599479 C T NOL4 Missense_Mutation p.G287R 0.32 tolerated(0.11) benign(0.203) TCGA-AY-6197-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.20 TCGA-AY-6197-01 18 3814078 3814078 T C DLGAP1 Missense_Mutation p.T385A 0.20 tolerated(0.23) probably_damaging(0.993) TCGA-AY-6197-01 18 39609295 39609295 A G PIK3C3 Missense_Mutation p.K533E 0.09 tolerated(0.95) benign(0.005) TCGA-AY-6197-01 18 42532501 42532501 T C SETBP1 Missense_Mutation p.Y1066H 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-AY-6197-01 18 44036642 44036642 C - RNF165 3'UTR 0.27 TCGA-AY-6197-01 18 44554580 44554580 C T TCEB3C Missense_Mutation p.R545Q 0.06 tolerated(0.1) benign(0.189) TCGA-AY-6197-01 18 55328480 55328480 T C ATP8B1 Missense_Mutation p.D878G 0.37 deleterious(0.01) benign(0.257) TCGA-AY-6197-01 18 56171320 56171320 C A ALPK2 Missense_Mutation p.E2030D 0.43 deleterious(0.01) benign(0.309) TCGA-AY-6197-01 18 63547862 63547862 C T CDH7 Missense_Mutation p.A697V 0.11 tolerated(0.37) benign(0.002) TCGA-AY-6197-01 18 65180814 65180814 T C DSEL Silent p.L354L 0.14 TCGA-AY-6197-01 18 72109236 72109236 T G FAM69C Missense_Mutation p.D331A 0.07 deleterious(0) probably_damaging(0.994) TCGA-AY-6197-01 18 72999044 72999044 C T TSHZ1 Missense_Mutation p.T516M 0.14 deleterious(0) possibly_damaging(0.88) TCGA-AY-6197-01 18 77894261 77894261 C - ADNP2 Frame_Shift_Del p.P324Lfs*8 0.34 TCGA-AY-6197-01 18 7906545 7906545 G A PTPRM Missense_Mutation p.A171T 0.34 deleterious(0) probably_damaging(0.994) TCGA-AY-6197-01 18 8784332 8784332 C T SOGA2 Missense_Mutation p.R408W 0.22 deleterious(0.03) probably_damaging(1) TCGA-AY-6197-01 18 8826044 8826044 G A SOGA2 Silent p.T1512T 0.38 TCGA-AY-6197-01 18 9954239 9954239 T C VAPA 3'UTR 0.40 TCGA-AY-6197-01 19 10570339 10570339 G T PDE4A Missense_Mutation p.E423D 0.33 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 19 10694631 10694631 C T AP1M2 Missense_Mutation p.G53D 0.31 tolerated(0.9) benign(0.049) TCGA-AY-6197-01 19 10748717 10748717 A G SLC44A2 Silent p.K596K 0.16 TCGA-AY-6197-01 19 1080706 1080706 G A HMHA1 Silent p.T662T 0.55 TCGA-AY-6197-01 19 10893643 10893643 T C DNM2 Silent p.I232I 0.13 TCGA-AY-6197-01 19 11095980 11095980 C T SMARCA4 Missense_Mutation p.S85L 0.36 benign(0.003) TCGA-AY-6197-01 19 11242191 11242191 G A LDLR 3'UTR 0.52 TCGA-AY-6197-01 19 11531843 11531843 T C CCDC151 Missense_Mutation p.N543S 0.12 deleterious(0.01) probably_damaging(1) TCGA-AY-6197-01 19 11892761 11892761 A G ZNF441 3'UTR 0.28 TCGA-AY-6197-01 19 11980146 11980146 A G ZNF439 3'UTR 0.46 TCGA-AY-6197-01 19 12246589 12246589 G T ZNF20 Missense_Mutation p.S45Y 0.38 deleterious(0.04) probably_damaging(0.961) TCGA-AY-6197-01 19 12384367 12384367 G A ZNF44 Missense_Mutation p.P283S 0.35 tolerated(1) benign(0.05) TCGA-AY-6197-01 19 12463904 12463904 C T ZNF442 Missense_Mutation p.A35T 0.48 tolerated(0.11) possibly_damaging(0.673) TCGA-AY-6197-01 19 12903831 12903832 - T JUNB 3'UTR 0.33 TCGA-AY-6197-01 19 13183900 13183900 C A NFIX Missense_Mutation p.A200E 0.38 tolerated(0.35) benign(0.232) TCGA-AY-6197-01 19 14163075 14163075 G C IL27RA Silent p.G628G 0.40 TCGA-AY-6197-01 19 14517888 14517888 G A CD97 Silent p.T741T 0.41 TCGA-AY-6197-01 19 15465682 15465682 G A AKAP8 3'UTR 0.37 TCGA-AY-6197-01 19 15918463 15918463 G T OR10H1 Missense_Mutation p.P129T 0.35 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 19 15996844 15996844 A G CYP4F2 Silent p.S335S 0.20 TCGA-AY-6197-01 19 16339660 16339660 C T AP1M1 Missense_Mutation p.P335L 0.21 deleterious(0) probably_damaging(0.987) TCGA-AY-6197-01 19 16980588 16980588 C - SIN3B Frame_Shift_Del p.P742Qfs*55 0.34 TCGA-AY-6197-01 19 17412239 17412239 C T ABHD8 Missense_Mutation p.A63T 0.37 tolerated_low_confidence(0.56) benign(0.013) TCGA-AY-6197-01 19 1827021 1827023 GGA - REXO1 In_Frame_Del p.S589del 0.24 TCGA-AY-6197-01 19 18466763 18466763 T C PGPEP1 Missense_Mutation p.V49A 0.30 deleterious(0) probably_damaging(0.994) TCGA-AY-6197-01 19 19257623 19257623 G A MEF2B Silent p.Y201Y 0.17 TCGA-AY-6197-01 19 19735109 19735109 T C LPAR2 Missense_Mutation p.M338V 0.19 tolerated(0.42) benign(0) TCGA-AY-6197-01 19 1978632 1978632 G A CSNK1G2 Silent p.P110P 0.46 TCGA-AY-6197-01 19 21990990 21990990 T C ZNF43 Missense_Mutation p.T617A 0.19 deleterious(0.03) benign(0.38) TCGA-AY-6197-01 19 21992218 21992218 A G ZNF43 Silent p.C207C 0.40 TCGA-AY-6197-01 19 22170115 22170115 T C ZNF208 Splice_Site p.X44_splice 0.08 TCGA-AY-6197-01 19 2433929 2433929 G A LMNB2 Silent p.S459S 0.50 TCGA-AY-6197-01 19 2790475 2790475 C T THOP1 Missense_Mutation p.R25W 0.32 deleterious(0) probably_damaging(0.925) TCGA-AY-6197-01 19 36038289 36038289 G A TMEM147 Silent p.T205T 0.35 TCGA-AY-6197-01 19 36113602 36113602 G A HAUS5 Missense_Mutation p.R584Q 0.24 tolerated(0.18) benign(0.099) TCGA-AY-6197-01 19 36497452 36497452 A G SYNE4 Missense_Mutation p.L247S 0.17 deleterious(0) probably_damaging(0.969) TCGA-AY-6197-01 19 36940752 36940752 A - ZNF566 Frame_Shift_Del p.F129Lfs*25 0.09 TCGA-AY-6197-01 19 37210374 37210375 - A ZNF567 Frame_Shift_Ins p.H222Tfs*5 0.32 TCGA-AY-6197-01 19 3736178 3736178 G A TJP3 Silent p.T390T 0.38 TCGA-AY-6197-01 19 37368662 37368662 T C ZNF345 Silent p.G310G 0.11 TCGA-AY-6197-01 19 3759910 3759910 C T APBA3 Missense_Mutation p.C118Y 0.22 tolerated_low_confidence(0.34) benign(0.001) TCGA-AY-6197-01 19 38262213 38262213 C A ZNF573 Missense_Mutation p.V65L 0.40 tolerated(0.75) benign(0.075) TCGA-AY-6197-01 19 38384098 38384098 C T WDR87 Missense_Mutation p.V710M 0.42 probably_damaging(0.999) TCGA-AY-6197-01 19 38872894 38872894 C A PSMD8 Intron 0.40 TCGA-AY-6197-01 19 3905491 3905491 C A ATCAY Missense_Mutation p.P66T 0.25 deleterious(0) probably_damaging(0.986) TCGA-AY-6197-01 19 39421922 39421922 C T MRPS12 5'UTR 0.44 TCGA-AY-6197-01 19 4047697 4047698 - C ZBTB7A 3'UTR 0.28 TCGA-AY-6197-01 19 41173846 41173846 C A NUMBL Missense_Mutation p.V453L 0.17 tolerated(0.47) benign(0) TCGA-AY-6197-01 19 41307090 41307090 C T EGLN2 Missense_Mutation p.R205C 0.36 tolerated(0.12) benign(0.003) TCGA-AY-6197-01 19 41748815 41748815 C T AXL Missense_Mutation p.S447L 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-AY-6197-01 19 42585631 42585632 - C ZNF574 3'UTR 0.31 TCGA-AY-6197-01 19 42873801 42873801 C T MEGF8 Missense_Mutation p.R2187C 0.35 deleterious(0) probably_damaging(0.94) TCGA-AY-6197-01 19 43910574 43910574 A T TEX101 5'UTR 0.19 TCGA-AY-6197-01 19 44306541 44306541 T C LYPD5 5'UTR 0.40 TCGA-AY-6197-01 19 4433467 4433467 G A CHAF1A Silent p.S868S 0.43 TCGA-AY-6197-01 19 4446610 4446610 C T UBXN6 Silent p.K269K 0.09 TCGA-AY-6197-01 19 44981221 44981221 A G ZNF180 Missense_Mutation p.Y493H 0.28 deleterious(0) probably_damaging(0.993) TCGA-AY-6197-01 19 45667472 45667472 G - TRAPPC6A Frame_Shift_Del p.L116Sfs*54 0.36 TCGA-AY-6197-01 19 45854761 45854761 T C ERCC2 3'UTR 0.47 TCGA-AY-6197-01 19 46341790 46341790 C T SYMPK Missense_Mutation p.G391S 0.34 tolerated(0.75) benign(0.002) TCGA-AY-6197-01 19 46388205 46388205 G A IRF2BP1 Silent p.T276T 0.30 TCGA-AY-6197-01 19 48254336 48254336 G A GLTSCR2 Silent p.R190R 0.16 TCGA-AY-6197-01 19 49131504 49131504 C T SPHK2 Missense_Mutation p.A281V 0.35 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 19 49254075 49254075 G A FUT1 Missense_Mutation p.A155V 0.19 tolerated(0.16) possibly_damaging(0.686) TCGA-AY-6197-01 19 49445795 49445795 G A DHDH Missense_Mutation p.V240M 0.41 deleterious(0) possibly_damaging(0.883) TCGA-AY-6197-01 19 49547325 49547325 C - CGB5 5'UTR 0.46 TCGA-AY-6197-01 19 49916246 49916246 G T CCDC155 Missense_Mutation p.A431S 0.48 tolerated_low_confidence(0.13) benign(0.028) TCGA-AY-6197-01 19 49983640 49983640 A G FLT3LG Silent p.L189L 0.35 TCGA-AY-6197-01 19 50363248 50363248 C T PTOV1 Silent p.G349G 0.15 TCGA-AY-6197-01 19 50412028 50412028 T C NUP62 Missense_Mutation p.D346G 0.26 deleterious(0) possibly_damaging(0.808) TCGA-AY-6197-01 19 50847999 50847999 A G NAPSB RNA 0.19 TCGA-AY-6197-01 19 50918720 50918720 G A POLD1 Missense_Mutation p.A864T 0.15 tolerated(0.32) benign(0.221) TCGA-AY-6197-01 19 50918747 50918747 T C POLD1 Missense_Mutation p.C873R 0.38 tolerated(0.49) probably_damaging(0.981) TCGA-AY-6197-01 19 51192559 51192559 G - SHANK1 Intron 0.28 TCGA-AY-6197-01 19 51274012 51274012 C T GPR32 Missense_Mutation p.A52V 0.14 tolerated(1) benign(0.001) TCGA-AY-6197-01 19 52249542 52249542 A T FPR1 Missense_Mutation p.S236T 0.43 tolerated(0.1) benign(0.344) TCGA-AY-6197-01 19 53384657 53384657 C T ZNF320 Missense_Mutation p.G241E 0.48 deleterious(0.02) possibly_damaging(0.887) TCGA-AY-6197-01 19 53668778 53668778 T C ZNF665 Missense_Mutation p.E322G 0.19 deleterious(0.02) possibly_damaging(0.678) TCGA-AY-6197-01 19 54756385 54756385 G A LILRB5 Missense_Mutation p.A501V 0.31 tolerated(0.34) benign(0.009) TCGA-AY-6197-01 19 54782772 54782772 C A LILRB2 Missense_Mutation p.G284C 0.32 deleterious(0) probably_damaging(0.987) TCGA-AY-6197-01 19 54803092 54803092 G A LILRA3 Silent p.Y195Y 0.37 TCGA-AY-6197-01 19 54974071 54974071 C A LENG9 Silent p.A235A 0.44 TCGA-AY-6197-01 19 55142523 55142523 C T LILRB1 5'UTR 0.46 TCGA-AY-6197-01 19 55610429 55610429 G A PPP1R12C Missense_Mutation p.R256W 0.31 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 19 56011574 56011574 G A SSC5D Silent p.T699T 0.37 TCGA-AY-6197-01 19 56201265 56201265 G A EPN1 Silent p.R323R 0.25 TCGA-AY-6197-01 19 56459618 56459618 T A NLRP8 Missense_Mutation p.V117D 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-AY-6197-01 19 5653242 5653242 G A SAFB Silent p.T470T 0.42 TCGA-AY-6197-01 19 57036599 57036599 T C ZNF471 Missense_Mutation p.I388T 0.18 tolerated(0.22) possibly_damaging(0.84) TCGA-AY-6197-01 19 5770954 5770954 G T CATSPERD Splice_Site p.X545_splice 0.13 TCGA-AY-6197-01 19 57988752 57988752 G A ZNF772 5'UTR 0.10 TCGA-AY-6197-01 19 58083671 58083671 T - ZNF416 Frame_Shift_Del p.K534Sfs*64 0.23 TCGA-AY-6197-01 19 5831553 5831553 T C FUT6 Silent p.K342K 0.10 TCGA-AY-6197-01 19 58601581 58601581 C T ZSCAN18 Silent p.P74P 0.22 TCGA-AY-6197-01 19 623587 623587 T C POLRMT Missense_Mutation p.Y386C 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-AY-6197-01 19 6755142 6755142 A G SH2D3A Silent p.R227R 0.11 TCGA-AY-6197-01 19 8464745 8464745 A G RAB11B Splice_Site p.X14_splice 0.08 TCGA-AY-6197-01 19 8595157 8595157 C T MYO1F Missense_Mutation p.E751K 0.48 tolerated(0.29) benign(0.313) TCGA-AY-6197-01 19 8808934 8808934 T C ACTL9 Missense_Mutation p.M40V 0.38 tolerated(0.85) benign(0) TCGA-AY-6197-01 19 9236904 9236904 G A OR7G3 Silent p.C241C 0.45 TCGA-AY-6197-01 19 9452957 9452957 C T ZNF559 Missense_Mutation p.A277V 0.35 tolerated(0.06) benign(0.014) TCGA-AY-6197-01 1 100347096 100347096 G T AGL Splice_Site p.X720_splice 0.15 TCGA-AY-6197-01 1 100515554 100515554 C A HIAT1 Silent p.T58T 0.06 TCGA-AY-6197-01 1 1026918 1026918 C T C1orf159 Silent p.A2A 0.38 TCGA-AY-6197-01 1 103345432 103345432 A G COL11A1 Missense_Mutation p.V1694A 0.11 unknown(0) TCGA-AY-6197-01 1 109811857 109811857 C T CELSR2 Missense_Mutation p.R2253C 0.29 deleterious(0) probably_damaging(0.973) TCGA-AY-6197-01 1 110019510 110019510 A G SYPL2 Missense_Mutation p.I123V 0.22 tolerated(1) benign(0.01) TCGA-AY-6197-01 1 110765855 110765855 C T KCNC4 Silent p.I316I 0.38 TCGA-AY-6197-01 1 11106990 11106990 G A MASP2 Silent p.F64F 0.37 TCGA-AY-6197-01 1 11158137 11158137 T C EXOSC10 Missense_Mutation p.Y63C 0.41 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 1 112998635 112998635 G A CTTNBP2NL Missense_Mutation p.R174H 0.42 deleterious(0.05) benign(0.196) TCGA-AY-6197-01 1 115144178 115144178 T C DENND2C Missense_Mutation p.E589G 0.23 deleterious(0.02) probably_damaging(0.925) TCGA-AY-6197-01 1 115488983 115488983 C T SYCP1 Missense_Mutation p.S743L 0.12 tolerated(0.9) benign(0.014) TCGA-AY-6197-01 1 117142616 117142616 G A IGSF3 Missense_Mutation p.T679M 0.43 tolerated(0.07) benign(0.149) TCGA-AY-6197-01 1 11779890 11779890 G A DRAXIN 3'UTR 0.32 TCGA-AY-6197-01 1 118170531 118170531 A - FAM46C 3'UTR 0.25 TCGA-AY-6197-01 1 118634560 118634560 T A SPAG17 Silent p.P413P 0.11 TCGA-AY-6197-01 1 1219450 1219451 - G SCNN1D Frame_Shift_Ins p.A151Gfs*122 0.20 TCGA-AY-6197-01 1 1268020 1268020 G A TAS1R3 Missense_Mutation p.C370Y 0.29 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 1 12943037 12943037 G T PRAMEF4 Missense_Mutation p.S60Y 0.37 deleterious(0) benign(0.074) TCGA-AY-6197-01 1 1422042 1422042 G A ATAD3B Missense_Mutation p.R403Q 0.31 deleterious(0.04) possibly_damaging(0.627) TCGA-AY-6197-01 1 144816627 144816627 A G NBPF9 Missense_Mutation p.I253V 0.22 tolerated(1) benign(0.025) TCGA-AY-6197-01 1 145115798 145115798 A G SEC22B RNA 0.08 TCGA-AY-6197-01 1 145474367 145474367 C A ANKRD34A Missense_Mutation p.L347I 0.39 tolerated(0.24) probably_damaging(0.952) TCGA-AY-6197-01 1 145698937 145698937 G T CD160 Intron 0.13 TCGA-AY-6197-01 1 147091501 147091501 C - BCL9 Frame_Shift_Del p.P516Lfs*5 0.35 TCGA-AY-6197-01 1 150483697 150483697 G - ECM1 Intron 0.34 TCGA-AY-6197-01 1 152286455 152286455 T C FLG Missense_Mutation p.S303G 0.23 possibly_damaging(0.485) TCGA-AY-6197-01 1 152733602 152733602 T C KPRP Missense_Mutation p.L513P 0.25 tolerated_low_confidence(0.07) benign(0.027) TCGA-AY-6197-01 1 152800003 152800003 A G LCE1A Missense_Mutation p.K19E 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AY-6197-01 1 152884296 152884296 G T IVL 3'UTR 0.19 TCGA-AY-6197-01 1 153509776 153509778 TTG - S100A5 In_Frame_Del p.N91del 0.20 TCGA-AY-6197-01 1 153610873 153610873 C T CHTOP Silent p.A56A 0.38 TCGA-AY-6197-01 1 155151086 155151086 C T TRIM46 Nonsense_Mutation p.R428* 0.29 TCGA-AY-6197-01 1 156130764 156130764 A G SEMA4A Missense_Mutation p.S252G 0.33 tolerated(0.06) benign(0.232) TCGA-AY-6197-01 1 156640135 156640135 C T NES Missense_Mutation p.S1282N 0.39 tolerated(0.19) benign(0.037) TCGA-AY-6197-01 1 15755269 15755269 G T EFHD2 3'UTR 0.23 TCGA-AY-6197-01 1 158669532 158669532 T - OR6K2 Frame_Shift_Del p.K304Sfs*3 0.17 TCGA-AY-6197-01 1 158725543 158725543 A T OR6K6 Missense_Mutation p.N313I 0.16 deleterious(0) probably_damaging(0.998) TCGA-AY-6197-01 1 159166812 159166812 T C CADM3 Missense_Mutation p.M339T 0.16 tolerated(0.11) possibly_damaging(0.583) TCGA-AY-6197-01 1 160171141 160171141 A G CASQ1 Missense_Mutation p.D389G 0.50 tolerated(0.08) unknown(0) TCGA-AY-6197-01 1 160313199 160313199 G - NCSTN Frame_Shift_Del p.G6Vfs*22 0.09 TCGA-AY-6197-01 1 161018554 161018554 C T ARHGAP30 Missense_Mutation p.E753K 0.13 tolerated_low_confidence(0.34) benign(0.008) TCGA-AY-6197-01 1 161130417 161130417 C A USP21 5'UTR 0.32 TCGA-AY-6197-01 1 163297326 163297326 G A NUF2 Missense_Mutation p.G58R 0.39 tolerated(0.32) possibly_damaging(0.577) TCGA-AY-6197-01 1 163318782 163318782 T C NUF2 Missense_Mutation p.V391A 0.12 deleterious(0) possibly_damaging(0.459) TCGA-AY-6197-01 1 16356552 16356552 G - CLCNKA Frame_Shift_Del p.Y466Mfs*13 0.35 TCGA-AY-6197-01 1 165865461 165865461 G A UCK2 Missense_Mutation p.V131M 0.43 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 1 170135869 170135869 T C METTL11B Missense_Mutation p.V186A 0.34 deleterious(0) benign(0.105) TCGA-AY-6197-01 1 171162643 171162644 - A FMO2 Frame_Shift_Ins p.Y103Ifs*10 0.28 TCGA-AY-6197-01 1 171752958 171752958 G A METTL13 Missense_Mutation p.D78N 0.41 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 1 174274241 174274241 C - RABGAP1L Frame_Shift_Del p.Q482Rfs*36 0.28 TCGA-AY-6197-01 1 175324743 175324743 C T TNR Missense_Mutation p.A1049T 0.12 deleterious(0.03) probably_damaging(0.995) TCGA-AY-6197-01 1 18152382 18152382 G A ACTL8 Missense_Mutation p.V157M 0.26 tolerated(0.06) benign(0.305) TCGA-AY-6197-01 1 183099640 183099640 G A LAMC1 Missense_Mutation p.A1148T 0.22 tolerated(0.07) possibly_damaging(0.847) TCGA-AY-6197-01 1 183510179 183510179 A G SMG7 Silent p.R452R 0.16 TCGA-AY-6197-01 1 183525317 183525317 A - NCF2 Frame_Shift_Del p.F506Sfs*30 0.25 TCGA-AY-6197-01 1 184446671 184446671 G A C1orf21 Missense_Mutation p.A10T 0.18 deleterious(0.01) benign(0.038) TCGA-AY-6197-01 1 186072641 186072641 G T HMCN1 Missense_Mutation p.E3537D 0.33 probably_damaging(0.994) TCGA-AY-6197-01 1 186277152 186277152 A G PRG4 Silent p.P767P 0.14 TCGA-AY-6197-01 1 186281443 186281443 T C PRG4 Silent p.P1310P 0.07 TCGA-AY-6197-01 1 186368168 186368168 A - C1orf27 Frame_Shift_Del p.D334Ifs*22 0.37 TCGA-AY-6197-01 1 19168233 19168234 - T TAS1R2 Frame_Shift_Ins p.N527Kfs*4 0.11 TCGA-AY-6197-01 1 19244873 19244873 C T IFFO2 Missense_Mutation p.V316M 0.36 tolerated(1) benign(0.024) TCGA-AY-6197-01 1 19401469 19401469 T C UBR4 Intron 0.12 TCGA-AY-6197-01 1 1960602 1960602 C T GABRD Silent p.G248G 0.14 TCGA-AY-6197-01 1 200377195 200377195 C T ZNF281 Missense_Mutation p.A547T 0.40 tolerated(0.06) probably_damaging(0.996) TCGA-AY-6197-01 1 200967535 200967535 C T KIF21B Missense_Mutation p.R685H 0.43 deleterious(0) probably_damaging(0.994) TCGA-AY-6197-01 1 201331099 201331101 TCT - TNNT2 In_Frame_Del p.K210del 0.20 TCGA-AY-6197-01 1 201837783 201837783 C T IPO9 Silent p.V621V 0.35 TCGA-AY-6197-01 1 202733237 202733237 C T KDM5B Missense_Mutation p.E250K 0.26 tolerated(0.17) possibly_damaging(0.765) TCGA-AY-6197-01 1 203797542 203797542 C T ZC3H11A Missense_Mutation p.P97L 0.37 deleterious(0) probably_damaging(0.998) TCGA-AY-6197-01 1 204085806 204085806 A G SOX13 Missense_Mutation p.Q197R 0.25 deleterious(0) possibly_damaging(0.904) TCGA-AY-6197-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.35 TCGA-AY-6197-01 1 204942434 204942434 C T NFASC Missense_Mutation p.A389V 0.40 tolerated(0.27) possibly_damaging(0.534) TCGA-AY-6197-01 1 205280910 205280910 T C NUAK2 Missense_Mutation p.Q92R 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-AY-6197-01 1 206650063 206650064 - A IKBKE Frame_Shift_Ins p.A197Sfs*108 0.23 TCGA-AY-6197-01 1 206765089 206765089 G A EIF2D 3'UTR 0.39 TCGA-AY-6197-01 1 211487068 211487068 A G RCOR3 Silent p.S540S 0.25 TCGA-AY-6197-01 1 2121309 2121309 C T AL590822.2 5'UTR 0.36 TCGA-AY-6197-01 1 214557936 214557936 A G PTPN14 Missense_Mutation p.M421T 0.34 tolerated(0.22) benign(0.002) TCGA-AY-6197-01 1 220247379 220247379 C T BPNT1 Missense_Mutation p.R52Q 0.40 deleterious(0) probably_damaging(0.982) TCGA-AY-6197-01 1 223990007 223990007 C T TP53BP2 Missense_Mutation p.A346T 0.41 tolerated(0.53) benign(0.006) TCGA-AY-6197-01 1 225525150 225525151 - A DNAH14 Frame_Shift_Ins p.I2559Nfs*2 0.37 TCGA-AY-6197-01 1 228294608 228294608 A G MRPL55 Silent p.D116D 0.18 TCGA-AY-6197-01 1 22843791 22843791 A G ZBTB40 Splice_Site p.X890_splice 0.10 TCGA-AY-6197-01 1 228463641 228463641 T C OBSCN Missense_Mutation p.V2420A 0.06 possibly_damaging(0.678) TCGA-AY-6197-01 1 228482580 228482580 A G OBSCN Missense_Mutation p.E4261G 0.07 probably_damaging(0.996) TCGA-AY-6197-01 1 228547967 228547967 G A OBSCN Intron 0.44 TCGA-AY-6197-01 1 229636604 229636604 C T NUP133 Missense_Mutation p.V138I 0.42 tolerated(0.2) benign(0.003) TCGA-AY-6197-01 1 230459035 230459035 T C PGBD5 3'UTR 0.27 TCGA-AY-6197-01 1 230459192 230459192 C A PGBD5 Missense_Mutation p.E449D 0.38 tolerated_low_confidence(0.35) benign(0.004) TCGA-AY-6197-01 1 231411060 231411060 G A GNPAT Missense_Mutation p.D613N 0.14 tolerated(0.49) benign(0.004) TCGA-AY-6197-01 1 232649838 232649838 A G SIPA1L2 Silent p.T416T 0.39 TCGA-AY-6197-01 1 232945944 232945944 T C MAP10 3'UTR 0.13 TCGA-AY-6197-01 1 23519786 23519786 G T HTR1D Silent p.A309A 0.36 TCGA-AY-6197-01 1 23520907 23520907 T C HTR1D 5'UTR 0.55 TCGA-AY-6197-01 1 235506806 235506806 C T GGPS1 3'UTR 0.45 TCGA-AY-6197-01 1 235856654 235856654 T C LYST Missense_Mutation p.Y3566C 0.18 deleterious(0.01) possibly_damaging(0.807) TCGA-AY-6197-01 1 23765670 23765670 G A ASAP3 Missense_Mutation p.T333I 0.34 deleterious(0.01) probably_damaging(1) TCGA-AY-6197-01 1 244218232 244218232 A G ZBTB18 Missense_Mutation p.K386E 0.24 deleterious(0.02) benign(0.275) TCGA-AY-6197-01 1 24661134 24661134 G A GRHL3 Splice_Site p.X69_splice 0.07 TCGA-AY-6197-01 1 247464041 247464041 T - ZNF496 Frame_Shift_Del p.N515Tfs*6 0.35 TCGA-AY-6197-01 1 24787013 24787013 A G NIPAL3 Missense_Mutation p.H302R 0.39 tolerated(0.09) probably_damaging(0.986) TCGA-AY-6197-01 1 24998908 24998908 A - SRRM1 3'UTR 0.40 TCGA-AY-6197-01 1 26150185 26150187 AAG - MTFR1L In_Frame_Del p.R27del 0.23 TCGA-AY-6197-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.30 TCGA-AY-6197-01 1 27107095 27107095 C T ARID1A Missense_Mutation p.R2236C 0.35 probably_damaging(0.943) TCGA-AY-6197-01 1 27190846 27190857 GTGTGTGTGTGC - SFN 3'UTR 0.21 TCGA-AY-6197-01 1 27671805 27671805 G A SYTL1 5'UTR 0.38 TCGA-AY-6197-01 1 28661080 28661080 A G MED18 Missense_Mutation p.M76V 0.25 tolerated(0.11) benign(0.001) TCGA-AY-6197-01 1 28800273 28800273 C - PHACTR4 Frame_Shift_Del p.P356Hfs*33 0.38 TCGA-AY-6197-01 1 29379717 29379717 A - EPB41 Frame_Shift_Del p.T582Qfs*11 0.22 TCGA-AY-6197-01 1 32257847 32257847 C T SPOCD1 Silent p.L977L 0.39 TCGA-AY-6197-01 1 33233495 33233495 C - KIAA1522 Frame_Shift_Del p.H117Tfs*24 0.34 TCGA-AY-6197-01 1 33585642 33585642 T C ADC Intron 0.38 TCGA-AY-6197-01 1 34673801 34673802 - T C1orf94 Frame_Shift_Ins p.L498Ffs*112 0.30 TCGA-AY-6197-01 1 35228554 35228554 A G GJB4 3'UTR 0.35 TCGA-AY-6197-01 1 38261483 38261483 G A MANEAL Missense_Mutation p.A209T 0.41 tolerated(0.67) benign(0.051) TCGA-AY-6197-01 1 39800357 39800357 A - MACF1 Intron 0.20 TCGA-AY-6197-01 1 39853179 39853179 A - MACF1 Frame_Shift_Del p.T2829Lfs*29 0.23 TCGA-AY-6197-01 1 39853297 39853297 A G MACF1 Missense_Mutation p.E2866G 0.24 benign(0.019) TCGA-AY-6197-01 1 41483534 41483534 G A SLFNL1 Missense_Mutation p.R244W 0.21 deleterious(0) probably_damaging(0.991) TCGA-AY-6197-01 1 44395921 44395921 C A ST3GAL3 3'UTR 0.29 TCGA-AY-6197-01 1 44804779 44804779 A G ERI3 Missense_Mutation p.Y143H 0.39 deleterious(0) probably_damaging(0.976) TCGA-AY-6197-01 1 45484055 45484055 T G ZSWIM5 3'UTR 0.48 TCGA-AY-6197-01 1 45810457 45810457 C G TESK2 3'UTR 0.37 TCGA-AY-6197-01 1 46827357 46827357 T C NSUN4 Missense_Mutation p.Y332H 0.38 tolerated(0.87) benign(0.015) TCGA-AY-6197-01 1 47717482 47717482 C T STIL Missense_Mutation p.A1065T 0.17 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 1 48877208 48877208 C T SPATA6 Silent p.P111P 0.39 TCGA-AY-6197-01 1 52494247 52494247 T C TXNDC12 Intron 0.42 TCGA-AY-6197-01 1 55050382 55050382 G A ACOT11 Missense_Mutation p.G30R 0.40 deleterious_low_confidence(0.04) benign(0.002) TCGA-AY-6197-01 1 55060298 55060298 C T ACOT11 Missense_Mutation p.R181W 0.42 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 1 64104390 64104390 A G PGM1 Missense_Mutation p.T373A 0.08 deleterious(0.01) possibly_damaging(0.594) TCGA-AY-6197-01 1 6695706 6695706 G A DNAJC11 3'UTR 0.30 TCGA-AY-6197-01 1 6698396 6698396 C T DNAJC11 Missense_Mutation p.A428T 0.29 tolerated(0.51) benign(0.219) TCGA-AY-6197-01 1 762721 762721 G A LINC00115 RNA 0.08 TCGA-AY-6197-01 1 89448756 89448756 G A RBMXL1 Missense_Mutation p.R252C 0.24 deleterious(0) possibly_damaging(0.901) TCGA-AY-6197-01 1 91790245 91790245 G A HFM1 Missense_Mutation p.T805I 0.35 deleterious(0.03) possibly_damaging(0.491) TCGA-AY-6197-01 1 92799010 92799010 A G RPAP2 Silent p.V506V 0.06 TCGA-AY-6197-01 1 93169000 93169000 A - EVI5 Frame_Shift_Del p.F216Lfs*15 0.12 TCGA-AY-6197-01 1 94335438 94335438 T - DNTTIP2 Frame_Shift_Del p.K747Sfs*58 0.21 TCGA-AY-6197-01 1 9714502 9714503 - G C1orf200 5'UTR 0.29 TCGA-AY-6197-01 1 981165 981165 G A AGRN Silent p.T863T 0.38 TCGA-AY-6197-01 20 10625551 10625551 G A JAG1 Silent p.C768C 0.37 TCGA-AY-6197-01 20 1285773 1285773 C T SNPH Missense_Mutation p.A187V 0.08 deleterious(0.01) probably_damaging(1) TCGA-AY-6197-01 20 18724891 18724891 C T DTD1 Missense_Mutation p.P209S 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AY-6197-01 20 20023104 20023104 G A CRNKL1 Silent p.D504D 0.43 TCGA-AY-6197-01 20 20475907 20475907 C A RALGAPA2 Missense_Mutation p.G1741W 0.32 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 20 21143504 21143504 C T RP4-777D9.2 RNA 0.43 TCGA-AY-6197-01 20 24930099 24930099 C T CST7 5'UTR 0.28 TCGA-AY-6197-01 20 2816925 2816925 G A PCED1A Missense_Mutation p.P293S 0.28 tolerated(0.26) benign(0.003) TCGA-AY-6197-01 20 30784770 30784770 G T PLAGL2 Missense_Mutation p.P326T 0.15 tolerated(0.1) benign(0.288) TCGA-AY-6197-01 20 30784813 30784813 T C PLAGL2 Silent p.P311P 0.11 TCGA-AY-6197-01 20 33147734 33147734 G A MAP1LC3A 3'UTR 0.39 TCGA-AY-6197-01 20 33370181 33370181 T C NCOA6 5'UTR 0.15 TCGA-AY-6197-01 20 33584544 33584546 GGA - MYH7B In_Frame_Del p.E1127del 0.25 TCGA-AY-6197-01 20 33875254 33875254 G A FAM83C Missense_Mutation p.S443L 0.49 deleterious_low_confidence(0) benign(0.33) TCGA-AY-6197-01 20 34067564 34067564 T C CEP250 Silent p.I794I 0.15 TCGA-AY-6197-01 20 34085611 34085611 C T CEP250 Silent p.L1124L 0.35 TCGA-AY-6197-01 20 34761861 34761861 G A EPB41L1 Silent p.T54T 0.39 TCGA-AY-6197-01 20 36768052 36768052 C T TGM2 Silent p.T368T 0.43 TCGA-AY-6197-01 20 37531368 37531368 C T PPP1R16B Missense_Mutation p.A210V 0.13 tolerated(0.19) benign(0.018) TCGA-AY-6197-01 20 39792606 39792606 C A PLCG1 Silent p.A352A 0.23 TCGA-AY-6197-01 20 39832957 39832957 A G ZHX3 Silent p.H200H 0.21 TCGA-AY-6197-01 20 40033663 40033663 G A CHD6 Missense_Mutation p.P2573L 0.43 tolerated(0.3) benign(0.007) TCGA-AY-6197-01 20 40034041 40034041 C T CHD6 Missense_Mutation p.R2447Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 20 4202762 4202762 T C ADRA1D Missense_Mutation p.Q376R 0.49 tolerated(0.5) benign(0.002) TCGA-AY-6197-01 20 43545424 43545424 G A PABPC1L Missense_Mutation p.G139S 0.38 deleterious(0) probably_damaging(0.996) TCGA-AY-6197-01 20 43559173 43559173 G A PABPC1L Missense_Mutation p.A349T 0.21 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 20 44162982 44162982 G C WFDC6 3'UTR 0.38 TCGA-AY-6197-01 20 44444067 44444067 A G UBE2C Intron 0.08 TCGA-AY-6197-01 20 44470597 44470597 T C ACOT8 Splice_Site p.X281_splice 0.30 TCGA-AY-6197-01 20 44756787 44756787 T A CD40 Missense_Mutation p.D190E 0.40 tolerated(0.26) benign(0.045) TCGA-AY-6197-01 20 47267954 47267954 A G PREX1 Missense_Mutation p.C879R 0.10 deleterious(0.01) possibly_damaging(0.836) TCGA-AY-6197-01 20 50139715 50139715 G A NFATC2 Silent p.C355C 0.31 TCGA-AY-6197-01 20 50407982 50407982 G A SALL4 Missense_Mutation p.P347L 0.12 deleterious(0) possibly_damaging(0.848) TCGA-AY-6197-01 20 58381133 58381133 C T PHACTR3 Silent p.A404A 0.27 TCGA-AY-6197-01 20 61391509 61391509 T C NTSR1 Missense_Mutation p.C383R 0.36 deleterious(0.02) probably_damaging(0.979) TCGA-AY-6197-01 20 61538507 61538507 C T DIDO1 Missense_Mutation p.G456S 0.37 benign(0.002) TCGA-AY-6197-01 20 62038526 62038526 C T KCNQ2 Missense_Mutation p.G697D 0.50 deleterious(0.02) possibly_damaging(0.616) TCGA-AY-6197-01 20 62366011 62366011 G A ZGPAT Missense_Mutation p.A296T 0.41 tolerated(0.62) benign(0) TCGA-AY-6197-01 20 8703001 8703001 G C PLCB1 Missense_Mutation p.G505A 0.40 tolerated(0.19) benign(0.02) TCGA-AY-6197-01 21 16338967 16338967 T - NRIP1 Frame_Shift_Del p.N516Tfs*11 0.36 TCGA-AY-6197-01 21 22790890 22790890 G C NCAM2 Splice_Site p.X494_splice 0.37 TCGA-AY-6197-01 21 27066145 27066145 T C JAM2 Missense_Mutation p.Y107H 0.24 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 21 30547144 30547144 C T MAP3K7CL Silent p.A220A 0.39 TCGA-AY-6197-01 21 31588178 31588178 C A CLDN8 Silent p.V22V 0.44 TCGA-AY-6197-01 21 32526658 32526658 C T TIAM1 Silent p.G1026G 0.15 TCGA-AY-6197-01 21 34117959 34117959 T G PAXBP1 Missense_Mutation p.E665A 0.36 tolerated(0.5) benign(0.046) TCGA-AY-6197-01 21 34134548 34134550 GAG - PAXBP1 In_Frame_Del p.P243del 0.42 TCGA-AY-6197-01 21 40587201 40587201 T C BRWD1 Silent p.S1249S 0.23 TCGA-AY-6197-01 21 40762792 40762792 A G WRB Intron 0.14 TCGA-AY-6197-01 21 41710103 41710103 C T DSCAM Missense_Mutation p.E570K 0.36 tolerated(0.1) possibly_damaging(0.895) TCGA-AY-6197-01 21 42720647 42720647 A - FAM3B Frame_Shift_Del p.K206Rfs*21 0.19 TCGA-AY-6197-01 21 47544810 47544810 C - COL6A2 Frame_Shift_Del p.P584Lfs*12 0.35 TCGA-AY-6197-01 22 16287648 16287648 C T POTEH Missense_Mutation p.V80M 0.69 tolerated_low_confidence(0.09) benign(0.066) TCGA-AY-6197-01 22 17310135 17310135 C T HSFY1P1 RNA 0.41 TCGA-AY-6197-01 22 18314816 18314816 C T MICAL3 Silent p.L953L 0.37 TCGA-AY-6197-01 22 18898452 18898452 G A DGCR6 Missense_Mutation p.V142I 0.32 tolerated(0.66) benign(0.009) TCGA-AY-6197-01 22 19376060 19376060 C T HIRA Silent p.R318R 0.40 TCGA-AY-6197-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.29 TCGA-AY-6197-01 22 21133964 21133964 C T SERPIND1 Missense_Mutation p.R122W 0.36 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 22 21384188 21384188 T C SLC7A4 Missense_Mutation p.T479A 0.15 tolerated(1) benign(0.002) TCGA-AY-6197-01 22 21829544 21829544 G A TMEM191C 3'Flank 0.48 TCGA-AY-6197-01 22 21838385 21838385 T C PI4KAP2 RNA 0.14 TCGA-AY-6197-01 22 22314038 22314038 C A TOP3B Missense_Mutation p.K575N 0.33 tolerated(0.07) benign(0.178) TCGA-AY-6197-01 22 22599471 22599471 G A VPREB1 Missense_Mutation p.V54I 0.40 tolerated(1) benign(0.004) TCGA-AY-6197-01 22 22842365 22842365 G A ZNF280B Silent p.G453G 0.06 TCGA-AY-6197-01 22 26892275 26892275 T - TFIP11 Frame_Shift_Del p.N538Tfs*75 0.28 TCGA-AY-6197-01 22 28392147 28392147 G A TTC28 Silent p.D1740D 0.25 TCGA-AY-6197-01 22 29688151 29688151 T G EWSR1 Silent p.L351L 0.23 TCGA-AY-6197-01 22 29835329 29835329 A - RFPL1 Intron 0.38 TCGA-AY-6197-01 22 29879486 29879486 A G NEFH Missense_Mutation p.K336E 0.37 deleterious(0) unknown(0) TCGA-AY-6197-01 22 29913349 29913349 C T THOC5 Missense_Mutation p.G499D 0.38 deleterious(0.04) benign(0.043) TCGA-AY-6197-01 22 30387548 30387548 G A MTMR3 Missense_Mutation p.A117T 0.38 deleterious(0) possibly_damaging(0.852) TCGA-AY-6197-01 22 32272245 32272245 G A DEPDC5 Missense_Mutation p.D1258N 0.45 tolerated(0.11) benign(0.016) TCGA-AY-6197-01 22 33255245 33255245 G A TIMP3 Missense_Mutation p.G173S 0.23 tolerated(0.68) probably_damaging(1) TCGA-AY-6197-01 22 35723304 35723304 A G TOM1 Missense_Mutation p.N230S 0.08 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 22 37902210 37902210 T G CARD10 Missense_Mutation p.T458P 0.23 tolerated(0.29) benign(0.001) TCGA-AY-6197-01 22 38512101 38512101 C T PLA2G6 Silent p.R620R 0.32 TCGA-AY-6197-01 22 38696816 38696816 G T CSNK1E Missense_Mutation p.R160S 0.42 tolerated_low_confidence(0.21) benign(0.065) TCGA-AY-6197-01 22 39413958 39413958 C T APOBEC3C Missense_Mutation p.A121V 0.43 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 22 40642088 40642088 A G TNRC6B Silent p.K25K 0.11 TCGA-AY-6197-01 22 41832525 41832525 G A TOB2 Silent p.A275A 0.41 TCGA-AY-6197-01 22 42076320 42076320 G T NHP2L1 Missense_Mutation p.L18I 0.49 deleterious(0.02) benign(0.407) TCGA-AY-6197-01 22 42299078 42299078 A G SREBF2 Silent p.S1004S 0.07 TCGA-AY-6197-01 22 42910143 42910143 G A RRP7A Silent p.Y242Y 0.38 TCGA-AY-6197-01 22 43619184 43619184 G A SCUBE1 Missense_Mutation p.R416W 0.32 tolerated(0.11) benign(0) TCGA-AY-6197-01 22 46657238 46657238 A G PKDREJ Missense_Mutation p.V661A 0.41 tolerated(0.06) possibly_damaging(0.724) TCGA-AY-6197-01 22 46725438 46725438 G A GTSE1 Missense_Mutation p.A704T 0.28 tolerated(0.09) benign(0.143) TCGA-AY-6197-01 22 50278671 50278671 T C ZBED4 Missense_Mutation p.M454T 0.36 tolerated(0.19) benign(0.031) TCGA-AY-6197-01 22 50721140 50721140 C A PLXNB2 Missense_Mutation p.S996I 0.28 deleterious(0.04) probably_damaging(0.951) TCGA-AY-6197-01 2 102480335 102480335 G A MAP4K4 Intron 0.33 TCGA-AY-6197-01 2 102964458 102964458 C A IL1RL1 Missense_Mutation p.L342I 0.31 tolerated(0.2) benign(0.098) TCGA-AY-6197-01 2 10350468 10350468 C T C2orf48 Silent p.C75C 0.27 TCGA-AY-6197-01 2 105883891 105883891 G A TGFBRAP1 Silent p.A844A 0.38 TCGA-AY-6197-01 2 105959604 105959604 C T C2orf49 Missense_Mutation p.S189L 0.35 tolerated(0.6) benign(0.005) TCGA-AY-6197-01 2 109382333 109382333 A G RANBP2 Missense_Mutation p.I1780V 0.38 tolerated_low_confidence(0.3) benign(0) TCGA-AY-6197-01 2 109513452 109513452 G A EDAR Missense_Mutation p.R420W 0.36 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 2 109513549 109513549 C A EDAR Missense_Mutation p.E387D 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-AY-6197-01 2 112686983 112686983 A G MERTK Silent p.S116S 0.42 TCGA-AY-6197-01 2 113326425 113326425 A G POLR1B Missense_Mutation p.I674V 0.37 tolerated(0.06) possibly_damaging(0.531) TCGA-AY-6197-01 2 114356335 114356336 - CC WASH2P RNA 0.20 TCGA-AY-6197-01 2 114513625 114513625 T A SLC35F5 Intron 0.29 TCGA-AY-6197-01 2 11742545 11742545 A G GREB1 Missense_Mutation p.Y848C 0.42 tolerated(0.14) probably_damaging(0.999) TCGA-AY-6197-01 2 11777919 11777919 G A GREB1 Silent p.A1808A 0.35 TCGA-AY-6197-01 2 120385286 120385286 G A PCDP1 Missense_Mutation p.R525Q 0.37 tolerated(0.42) benign(0.009) TCGA-AY-6197-01 2 127825801 127825801 G - BIN1 Frame_Shift_Del p.Q184Sfs*12 0.23 TCGA-AY-6197-01 2 128030525 128030525 G A ERCC3 Silent p.Y581Y 0.43 TCGA-AY-6197-01 2 130925148 130925148 G T SMPD4 Silent p.P264P 0.26 TCGA-AY-6197-01 2 135738834 135738834 A G MAP3K19 Silent p.P1159P 0.15 TCGA-AY-6197-01 2 136614417 136614417 C T MCM6 Missense_Mutation p.A503T 0.07 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 2 141200186 141200186 T - LRP1B Frame_Shift_Del p.N3434Tfs*84 0.33 TCGA-AY-6197-01 2 141201998 141201998 C A LRP1B Missense_Mutation p.G3399C 0.26 probably_damaging(0.991) TCGA-AY-6197-01 2 152552108 152552108 G A NEB Missense_Mutation p.A553V 0.40 probably_damaging(0.995) TCGA-AY-6197-01 2 152732945 152732945 G A CACNB4 Silent p.H172H 0.39 TCGA-AY-6197-01 2 158300549 158300549 T A CYTIP 5'UTR 0.26 TCGA-AY-6197-01 2 160086516 160086516 C T TANC1 Missense_Mutation p.P1527S 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AY-6197-01 2 160873180 160873181 - A PLA2R1 Frame_Shift_Ins p.Y499Lfs*4 0.30 TCGA-AY-6197-01 2 160994115 160994115 A G ITGB6 Missense_Mutation p.L497P 0.40 tolerated(0.17) benign(0.282) TCGA-AY-6197-01 2 1653089 1653089 C A PXDN Missense_Mutation p.W821C 0.38 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 2 165755210 165755211 - A SLC38A11 Frame_Shift_Ins p.I320Yfs*12 0.28 TCGA-AY-6197-01 2 165765261 165765261 A - SLC38A11 Frame_Shift_Del p.F272Lfs*13 0.30 TCGA-AY-6197-01 2 165772467 165772467 C T SLC38A11 Missense_Mutation p.A156T 0.35 tolerated(0.05) possibly_damaging(0.668) TCGA-AY-6197-01 2 167055991 167055992 - T SCN9A Frame_Shift_Ins p.V1709Sfs*8 0.11 TCGA-AY-6197-01 2 168102262 168102262 T C XIRP2 Missense_Mutation p.W1454R 0.38 probably_damaging(1) TCGA-AY-6197-01 2 170097611 170097611 C A LRP2 Missense_Mutation p.R1311L 0.36 benign(0.106) TCGA-AY-6197-01 2 170460581 170460581 T - PPIG Frame_Shift_Del p.F12Lfs*115 0.11 TCGA-AY-6197-01 2 170668385 170668385 A T SSB 3'UTR 0.26 TCGA-AY-6197-01 2 174783419 174783419 T C SP3 Silent p.V578V 0.07 TCGA-AY-6197-01 2 176835490 176835490 A G KIAA1715 Splice_Site p.X119_splice 0.18 TCGA-AY-6197-01 2 17698391 17698391 T C RAD51AP2 Missense_Mutation p.N431S 0.20 tolerated(0.13) benign(0.015) TCGA-AY-6197-01 2 176988158 176988159 - G HOXD9 Frame_Shift_Ins p.T224Nfs*48 0.28 TCGA-AY-6197-01 2 178684994 178684994 C A PDE11A Missense_Mutation p.R510I 0.36 deleterious(0) probably_damaging(0.933) TCGA-AY-6197-01 2 179474032 179474032 G A TTN Silent p.R17335R 0.41 TCGA-AY-6197-01 2 179616639 179616639 G T TTN Intron 0.37 TCGA-AY-6197-01 2 18112979 18112979 G A KCNS3 Missense_Mutation p.G235E 0.10 tolerated(0.07) benign(0.026) TCGA-AY-6197-01 2 187514613 187514613 G A ITGAV Splice_Site p.X466_splice 0.28 TCGA-AY-6197-01 2 187540445 187540445 G A ITGAV Splice_Site p.X940_splice 0.38 TCGA-AY-6197-01 2 189929324 189929324 C - COL5A2 Frame_Shift_Del p.D559Ifs*16 0.35 TCGA-AY-6197-01 2 191125960 191125960 C T HIBCH Missense_Mutation p.G147R 0.10 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 2 198400289 198400289 T C HSPE1-MOB4 Silent p.N89N 0.15 TCGA-AY-6197-01 2 198948897 198948897 G A PLCL1 Missense_Mutation p.R219Q 0.35 deleterious(0.03) benign(0.271) TCGA-AY-6197-01 2 200804838 200804838 G A TYW5 Missense_Mutation p.R108W 0.36 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 2 20145704 20145704 G A WDR35 Missense_Mutation p.A574V 0.12 tolerated(0.22) benign(0.004) TCGA-AY-6197-01 2 202149798 202149799 - T CASP8 Frame_Shift_Ins p.I416Yfs*8 0.26 TCGA-AY-6197-01 2 202272278 202272278 C T TRAK2 Missense_Mutation p.S45N 0.22 tolerated(0.08) benign(0.003) TCGA-AY-6197-01 2 203397437 203397437 T C BMPR2 Missense_Mutation p.C420R 0.14 deleterious(0) probably_damaging(0.998) TCGA-AY-6197-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.42 TCGA-AY-6197-01 2 204131288 204131288 G A CYP20A1 Missense_Mutation p.V162M 0.32 deleterious(0.03) benign(0.36) TCGA-AY-6197-01 2 204591543 204591543 A - CD28 Frame_Shift_Del p.T82Rfs*14 0.22 TCGA-AY-6197-01 2 20647977 20647977 G A RHOB 3'UTR 0.11 TCGA-AY-6197-01 2 207460861 207460861 C - ADAM23 Frame_Shift_Del p.K781Rfs*14 0.30 TCGA-AY-6197-01 2 21230224 21230224 A G APOB Silent p.S3172S 0.23 TCGA-AY-6197-01 2 217280979 217280979 G C SMARCAL1 Splice_Site p.X271_splice 0.19 TCGA-AY-6197-01 2 220046823 220046823 C T FAM134A Silent p.P368P 0.39 TCGA-AY-6197-01 2 220073735 220073735 A T ZFAND2B Silent p.A231A 0.33 TCGA-AY-6197-01 2 220075487 220075487 G A ABCB6 Silent p.R734R 0.33 TCGA-AY-6197-01 2 220352922 220352922 C A SPEG Missense_Mutation p.P2583H 0.35 probably_damaging(0.999) TCGA-AY-6197-01 2 220405283 220405283 G A CHPF Missense_Mutation p.R384C 0.34 deleterious(0.01) possibly_damaging(0.849) TCGA-AY-6197-01 2 220498666 220498666 T C SLC4A3 Missense_Mutation p.I536T 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-AY-6197-01 2 222428871 222428871 G A EPHA4 Missense_Mutation p.R135C 0.37 deleterious(0.05) probably_damaging(0.993) TCGA-AY-6197-01 2 224630019 224630019 G T AP1S3 Missense_Mutation p.L114M 0.09 deleterious(0.02) probably_damaging(1) TCGA-AY-6197-01 2 224849556 224849556 G A SERPINE2 Missense_Mutation p.S278F 0.06 deleterious(0) probably_damaging(0.971) TCGA-AY-6197-01 2 225714267 225714267 G A DOCK10 Missense_Mutation p.T731I 0.36 deleterious(0.01) possibly_damaging(0.833) TCGA-AY-6197-01 2 228846310 228846310 T - SPHKAP 3'UTR 0.41 TCGA-AY-6197-01 2 230135738 230135738 G A PID1 5'UTR 0.40 TCGA-AY-6197-01 2 230910603 230910603 C T SLC16A14 Silent p.A413A 0.07 TCGA-AY-6197-01 2 231176275 231176275 C T SP140 Missense_Mutation p.R824C 0.25 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 2 233527575 233527575 G - EFHD1 Frame_Shift_Del p.A124Pfs*8 0.33 TCGA-AY-6197-01 2 233674511 233674511 T - GIGYF2 Frame_Shift_Del p.L652* 0.30 TCGA-AY-6197-01 2 233899285 233899285 G A NEU2 Missense_Mutation p.V221M 0.19 tolerated(0.22) possibly_damaging(0.706) TCGA-AY-6197-01 2 234637957 234637957 C - UGT1A3 Frame_Shift_Del p.P63Qfs*3 0.29 TCGA-AY-6197-01 2 234652082 234652082 T C UGT1A10 Intron 0.07 TCGA-AY-6197-01 2 234959635 234959635 G A SPP2 Missense_Mutation p.D36N 0.21 tolerated(0.08) benign(0.28) TCGA-AY-6197-01 2 236659083 236659083 C T AGAP1 Silent p.Y208Y 0.42 TCGA-AY-6197-01 2 241494442 241494442 C T ANKMY1 5'UTR 0.34 TCGA-AY-6197-01 2 242169674 242169674 C T HDLBP Missense_Mutation p.R1162H 0.46 deleterious(0.02) possibly_damaging(0.49) TCGA-AY-6197-01 2 26417961 26417961 C A HADHA Missense_Mutation p.K540N 0.10 deleterious(0.04) probably_damaging(0.924) TCGA-AY-6197-01 2 26676344 26676344 T C DRC1 Missense_Mutation p.S616P 0.39 deleterious(0.05) benign(0.012) TCGA-AY-6197-01 2 27292517 27292517 C - AGBL5 Frame_Shift_Del p.R813Gfs*68 0.32 TCGA-AY-6197-01 2 28805341 28805341 A - PLB1 Frame_Shift_Del p.V570Sfs*6 0.30 TCGA-AY-6197-01 2 29247164 29247164 G A FAM179A Missense_Mutation p.G593S 0.45 tolerated(0.4) benign(0.007) TCGA-AY-6197-01 2 31483650 31483650 C A EHD3 Silent p.S259S 0.35 TCGA-AY-6197-01 2 32891723 32891723 G A TTC27 Missense_Mutation p.R276Q 0.34 tolerated(0.13) benign(0.426) TCGA-AY-6197-01 2 33951901 33951901 C G AC009499.1 Intron 0.11 TCGA-AY-6197-01 2 36808684 36808684 A G FEZ2 Intron 0.06 TCGA-AY-6197-01 2 37374042 37374042 T - EIF2AK2 Frame_Shift_Del p.N65Mfs*6 0.26 TCGA-AY-6197-01 2 43919767 43919767 G A PLEKHH2 Missense_Mutation p.V101I 0.38 tolerated(0.9) benign(0) TCGA-AY-6197-01 2 44065652 44065652 G A ABCG5 Intron 0.39 TCGA-AY-6197-01 2 44066235 44066235 G A ABCG8 Missense_Mutation p.A15T 0.08 tolerated_low_confidence(0.18) benign(0.004) TCGA-AY-6197-01 2 46986077 46986077 G T SOCS5 Missense_Mutation p.L136F 0.37 tolerated(0.26) benign(0.003) TCGA-AY-6197-01 2 48914956 48914956 G A LHCGR Silent p.T660T 0.35 TCGA-AY-6197-01 2 54753705 54753705 T A SPTBN1 Splice_Site p.X50_splice 0.38 TCGA-AY-6197-01 2 55449431 55449431 G T CLHC1 Silent p.G39G 0.40 TCGA-AY-6197-01 2 5833132 5833132 C T SOX11 Silent p.S93S 0.37 TCGA-AY-6197-01 2 5836505 5836505 G A SOX11 3'UTR 0.21 TCGA-AY-6197-01 2 60688969 60688969 G - BCL11A Frame_Shift_Del p.L360Sfs*61 0.29 TCGA-AY-6197-01 2 61259096 61259096 C T PEX13 Missense_Mutation p.A212V 0.25 tolerated(0.08) benign(0.014) TCGA-AY-6197-01 2 62067277 62067277 G T FAM161A Missense_Mutation p.P288T 0.38 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 2 64863781 64863781 T C SERTAD2 Silent p.E75E 0.09 TCGA-AY-6197-01 2 68361758 68361758 A - WDR92 Intron 0.45 TCGA-AY-6197-01 2 69757257 69757257 A G AAK1 Silent p.L252L 0.06 TCGA-AY-6197-01 2 70088427 70088427 T C GMCL1 Missense_Mutation p.Y364H 0.07 deleterious(0) probably_damaging(0.984) TCGA-AY-6197-01 2 71211806 71211806 C T ANKRD53 Silent p.G323G 0.06 TCGA-AY-6197-01 2 71365659 71365660 - A MPHOSPH10 Frame_Shift_Ins p.P383Afs*26 0.36 TCGA-AY-6197-01 2 73829349 73829349 G A ALMS1 Missense_Mutation p.R4050H 0.33 benign(0.333) TCGA-AY-6197-01 2 74043233 74043233 T C C2orf78 Missense_Mutation p.M628T 0.41 deleterious(0.04) benign(0.005) TCGA-AY-6197-01 2 74642984 74642984 C T C2orf81 Missense_Mutation p.R110Q 0.44 deleterious(0.01) probably_damaging(0.925) TCGA-AY-6197-01 2 74643093 74643093 G T C2orf81 Intron 0.47 TCGA-AY-6197-01 2 87141003 87141003 T C RGPD1 5'Flank 0.16 TCGA-AY-6197-01 2 95753233 95753233 G - MRPS5 Frame_Shift_Del p.R388Gfs*4 0.28 TCGA-AY-6197-01 2 95847911 95847911 G A ZNF2 3'UTR 0.28 TCGA-AY-6197-01 2 97526916 97526916 G A SEMA4C Missense_Mutation p.S650L 0.36 tolerated(0.59) benign(0.079) TCGA-AY-6197-01 2 99179969 99179969 A G INPP4A Missense_Mutation p.T638A 0.24 deleterious(0.02) benign(0.128) TCGA-AY-6197-01 3 100467075 100467075 T G TFG Silent p.A301A 0.39 TCGA-AY-6197-01 3 101219912 101219912 A G SENP7 Splice_Site p.X30_splice 0.07 TCGA-AY-6197-01 3 10327414 10327414 T C GHRL 3'UTR 0.44 TCGA-AY-6197-01 3 105290759 105290759 A C ALCAM Missense_Mutation p.E576D 0.45 tolerated(0.06) unknown(0) TCGA-AY-6197-01 3 108076719 108076719 C T HHLA2 Silent p.H238H 0.42 TCGA-AY-6197-01 3 108303930 108303930 C T KIAA1524 Missense_Mutation p.G78S 0.22 tolerated(0.91) benign(0.001) TCGA-AY-6197-01 3 108672608 108672608 A G GUCA1C Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.916) TCGA-AY-6197-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.16 TCGA-AY-6197-01 3 121341916 121341916 C T FBXO40 Missense_Mutation p.P547L 0.42 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 3 123010121 123010121 C T ADCY5 Missense_Mutation p.E1056K 0.47 deleterious(0.02) possibly_damaging(0.579) TCGA-AY-6197-01 3 123444890 123444890 T C MYLK Missense_Mutation p.S518G 0.35 tolerated(0.09) benign(0.288) TCGA-AY-6197-01 3 123694365 123694365 C T ROPN1 Missense_Mutation p.R86H 0.25 tolerated(0.42) benign(0) TCGA-AY-6197-01 3 123987809 123987809 C T KALRN Missense_Mutation p.R224W 0.46 deleterious(0) probably_damaging(0.988) TCGA-AY-6197-01 3 12544791 12544791 G A TSEN2 Silent p.E113E 0.37 TCGA-AY-6197-01 3 126708047 126708047 G A PLXNA1 Missense_Mutation p.R204H 0.13 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 3 127642455 127642455 A G KBTBD12 Missense_Mutation p.D184G 0.06 deleterious(0.01) probably_damaging(0.989) TCGA-AY-6197-01 3 127682184 127682184 G A KBTBD12 Missense_Mutation p.A549T 0.48 tolerated(0.34) benign(0.011) TCGA-AY-6197-01 3 128181457 128181457 T C DNAJB8 Missense_Mutation p.E211G 0.18 deleterious(0.02) benign(0.402) TCGA-AY-6197-01 3 12854815 12854815 C A CAND2 Missense_Mutation p.P312T 0.12 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 3 128968481 128968481 A G COPG1 5'UTR 0.07 TCGA-AY-6197-01 3 132432127 132432127 A G NPHP3 Missense_Mutation p.Y321H 0.05 tolerated(0.43) benign(0.002) TCGA-AY-6197-01 3 133368786 133368786 A G TOPBP1 Missense_Mutation p.I364T 0.14 deleterious(0) probably_damaging(0.994) TCGA-AY-6197-01 3 13399814 13399814 A G NUP210 Missense_Mutation p.C746R 0.15 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 3 13522811 13522811 G A HDAC11 Missense_Mutation p.R23H 0.09 tolerated(0.14) possibly_damaging(0.738) TCGA-AY-6197-01 3 138665363 138665363 G A FOXL2 Missense_Mutation p.R68C 0.12 deleterious(0) benign(0.419) TCGA-AY-6197-01 3 140401611 140401611 C T TRIM42 Missense_Mutation p.R217C 0.43 deleterious(0) probably_damaging(0.991) TCGA-AY-6197-01 3 140406737 140406737 A G TRIM42 Missense_Mutation p.R405G 0.10 deleterious(0.01) possibly_damaging(0.835) TCGA-AY-6197-01 3 141295908 141295908 T C RASA2 Missense_Mutation p.V517A 0.06 deleterious(0) possibly_damaging(0.569) TCGA-AY-6197-01 3 142272096 142272097 - A ATR Frame_Shift_Ins p.S927Qfs*4 0.28 TCGA-AY-6197-01 3 142681268 142681268 A - PAQR9 Frame_Shift_Del p.F304Sfs*26 0.24 TCGA-AY-6197-01 3 150930928 150930928 A - P2RY14 3'UTR 0.36 TCGA-AY-6197-01 3 151161581 151161581 G A IGSF10 Silent p.R1718R 0.17 TCGA-AY-6197-01 3 152880682 152880682 T C RAP2B Missense_Mutation p.M67T 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-AY-6197-01 3 15631061 15631061 G A HACL1 Nonsense_Mutation p.Q123* 0.44 TCGA-AY-6197-01 3 158364616 158364616 T C GFM1 Missense_Mutation p.V151A 0.35 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 3 169555272 169555272 G T LRRIQ4 Missense_Mutation p.Q512H 0.37 deleterious(0) probably_damaging(0.959) TCGA-AY-6197-01 3 170846627 170846627 G A TNIK Missense_Mutation p.A550V 0.45 tolerated(0.3) possibly_damaging(0.777) TCGA-AY-6197-01 3 172166073 172166073 G A GHSR Missense_Mutation p.A44V 0.22 tolerated(1) benign(0.017) TCGA-AY-6197-01 3 179597739 179597739 C A PEX5L Silent p.P161P 0.14 TCGA-AY-6197-01 3 180327987 180327987 A G TTC14 Missense_Mutation p.H657R 0.12 tolerated_low_confidence(0.53) unknown(0) TCGA-AY-6197-01 3 183209808 183209808 G A KLHL6 Silent p.V591V 0.05 TCGA-AY-6197-01 3 183952959 183952959 C T VWA5B2 Missense_Mutation p.R322C 0.27 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 3 186505412 186505412 T C EIF4A2 Intron 0.17 TCGA-AY-6197-01 3 190106234 190106234 T C CLDN16 Splice_Site p.X108_splice 0.04 TCGA-AY-6197-01 3 190967834 190967834 T C OSTN Missense_Mutation p.V109A 0.07 tolerated(0.12) benign(0.009) TCGA-AY-6197-01 3 19384206 19384206 C T KCNH8 Silent p.N190N 0.37 TCGA-AY-6197-01 3 195447869 195447869 G A MUC20 5'UTR 0.09 TCGA-AY-6197-01 3 195512199 195512199 G A MUC4 Silent p.T2084T 0.12 TCGA-AY-6197-01 3 197670869 197670869 G A IQCG Missense_Mutation p.T21M 0.36 tolerated_low_confidence(0.58) benign(0.019) TCGA-AY-6197-01 3 20212215 20212216 - T SGOL1 Frame_Shift_Ins p.R522Kfs*29 0.17 TCGA-AY-6197-01 3 23960861 23960861 C T RPL15 Missense_Mutation p.R162C 0.44 deleterious(0.02) benign(0.003) TCGA-AY-6197-01 3 26751758 26751758 A - LRRC3B Frame_Shift_Del p.T201Lfs*17 0.25 TCGA-AY-6197-01 3 3085376 3085376 A - CNTN4 Frame_Shift_Del p.G935Dfs*35 0.30 TCGA-AY-6197-01 3 30875382 30875382 C A GADL1 Missense_Mutation p.G338V 0.38 tolerated(0.22) probably_damaging(0.984) TCGA-AY-6197-01 3 31658430 31658430 C T STT3B Missense_Mutation p.A329V 0.25 tolerated(0.34) benign(0.02) TCGA-AY-6197-01 3 32181853 32181853 C T GPD1L Missense_Mutation p.T167I 0.35 deleterious(0) probably_damaging(0.993) TCGA-AY-6197-01 3 32280448 32280448 C A CMTM8 5'UTR 0.15 TCGA-AY-6197-01 3 33063126 33063126 G T GLB1 Missense_Mutation p.L389M 0.37 deleterious(0) probably_damaging(0.995) TCGA-AY-6197-01 3 33866809 33866809 T C PDCD6IP Missense_Mutation p.V198A 0.05 tolerated(0.14) possibly_damaging(0.488) TCGA-AY-6197-01 3 38173085 38173085 A G ACAA1 Splice_Site p.X149_splice 0.30 TCGA-AY-6197-01 3 384713 384713 G T CHL1 Missense_Mutation p.K242N 0.36 tolerated(0.27) benign(0.203) TCGA-AY-6197-01 3 38519408 38519408 G A ACVR2B Missense_Mutation p.G106D 0.06 deleterious(0) possibly_damaging(0.737) TCGA-AY-6197-01 3 38913108 38913108 C T SCN11A Missense_Mutation p.G1196E 0.11 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 3 39186667 39186667 G - CSRNP1 Frame_Shift_Del p.R96Afs*49 0.18 TCGA-AY-6197-01 3 39227344 39227344 C - XIRP1 Frame_Shift_Del p.G1198Afs*29 0.12 TCGA-AY-6197-01 3 40192604 40192604 G T MYRIP Missense_Mutation p.G133V 0.13 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 3 40553936 40553937 - G ZNF620 Frame_Shift_Ins p.E67Gfs*25 0.28 TCGA-AY-6197-01 3 44285910 44285910 A G TOPAZ1 Missense_Mutation p.K638E 0.11 deleterious(0.02) possibly_damaging(0.864) TCGA-AY-6197-01 3 44775874 44775874 A - ZNF501 5'UTR 0.32 TCGA-AY-6197-01 3 46011195 46011195 A G FYCO1 Missense_Mutation p.M201T 0.16 deleterious(0) benign(0.14) TCGA-AY-6197-01 3 46753703 46753703 G - PRSS50 3'UTR 0.10 TCGA-AY-6197-01 3 47061295 47061295 G T SETD2 Silent p.T2462T 0.43 TCGA-AY-6197-01 3 48465485 48465485 C - PLXNB1 Frame_Shift_Del p.G179Vfs*41 0.22 TCGA-AY-6197-01 3 48686617 48686617 C A CELSR3 Missense_Mutation p.Q2168H 0.46 deleterious(0.04) benign(0.003) TCGA-AY-6197-01 3 48694266 48694266 G A CELSR3 Missense_Mutation p.R1422C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 3 49569313 49569313 C T DAG1 Missense_Mutation p.R457W 0.34 deleterious(0.02) possibly_damaging(0.798) TCGA-AY-6197-01 3 49690963 49690963 C - BSN Frame_Shift_Del p.T1327Pfs*44 0.08 TCGA-AY-6197-01 3 50225208 50225208 G A SEMA3F Missense_Mutation p.R673H 0.52 deleterious(0.01) benign(0.223) TCGA-AY-6197-01 3 50355588 50355588 G A HYAL2 Missense_Mutation p.A465V 0.39 tolerated(0.76) benign(0.001) TCGA-AY-6197-01 3 50416594 50416594 T C CACNA2D2 Missense_Mutation p.M397V 0.37 deleterious(0) possibly_damaging(0.469) TCGA-AY-6197-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.32 TCGA-AY-6197-01 3 51425301 51425301 T C MANF Missense_Mutation p.L119P 0.35 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 3 51432495 51432495 A G RBM15B 3'UTR 0.11 TCGA-AY-6197-01 3 52383052 52383052 G A DNAH1 Missense_Mutation p.R752Q 0.36 benign(0.002) TCGA-AY-6197-01 3 52391964 52391964 A C DNAH1 Missense_Mutation p.K1344T 0.08 probably_damaging(0.998) TCGA-AY-6197-01 3 52457119 52457119 A - PHF7 Frame_Shift_Del p.N312Tfs*41 0.26 TCGA-AY-6197-01 3 52544186 52544186 G A STAB1 Missense_Mutation p.D855N 0.14 tolerated(0.11) benign(0.073) TCGA-AY-6197-01 3 52550139 52550139 T C STAB1 Silent p.H1343H 0.19 TCGA-AY-6197-01 3 52864443 52864443 T - ITIH4 Intron 0.37 TCGA-AY-6197-01 3 54958853 54958853 T C LRTM1 Missense_Mutation p.N133D 0.37 tolerated(0.15) benign(0.037) TCGA-AY-6197-01 3 57457248 57457248 C T snoU13 5'Flank 0.15 TCGA-AY-6197-01 3 58089788 58089788 G - FLNB Frame_Shift_Del p.G531Dfs*42 0.34 TCGA-AY-6197-01 3 63466509 63466509 T - SYNPR Frame_Shift_Del p.F30Lfs*18 0.17 TCGA-AY-6197-01 3 65365112 65365112 G A MAGI1 Missense_Mutation p.T940M 0.24 deleterious(0.05) probably_damaging(0.958) TCGA-AY-6197-01 3 69097670 69097670 C T TMF1 Nonsense_Mutation p.W62* 0.35 TCGA-AY-6197-01 3 69351534 69351534 G A FRMD4B Missense_Mutation p.P126S 0.15 tolerated(0.32) probably_damaging(1) TCGA-AY-6197-01 3 74313501 74313501 T - CNTN3 3'UTR 0.27 TCGA-AY-6197-01 3 9482309 9482309 A G SETD5 Missense_Mutation p.K246R 0.37 tolerated(0.08) benign(0.372) TCGA-AY-6197-01 3 97487034 97487034 G A ARL6 Missense_Mutation p.S28N 0.31 deleterious(0) probably_damaging(0.998) TCGA-AY-6197-01 3 97617783 97617783 T C CRYBG3 Silent p.F638F 0.29 TCGA-AY-6197-01 3 9799027 9799027 A G OGG1 Intron 0.27 TCGA-AY-6197-01 3 9834714 9834714 C T ARPC4 5'Flank 0.43 TCGA-AY-6197-01 3 9971731 9971731 A G IL17RC Silent p.K463K 0.07 TCGA-AY-6197-01 4 100470093 100470093 T - TRMT10A 3'UTR 0.57 TCGA-AY-6197-01 4 100480314 100480314 C T TRMT10A Missense_Mutation p.R61H 0.38 tolerated(0.05) probably_damaging(0.999) TCGA-AY-6197-01 4 102776306 102776306 T C BANK1 Missense_Mutation p.I195T 0.23 tolerated(0.56) benign(0.046) TCGA-AY-6197-01 4 106157738 106157738 A G TET2 Missense_Mutation p.H880R 0.35 deleterious(0.03) benign(0.024) TCGA-AY-6197-01 4 107115874 107115874 C T TBCK Splice_Site p.X633_splice 0.38 TCGA-AY-6197-01 4 107216309 107216309 C T TBCK Missense_Mutation p.V70M 0.17 deleterious(0) probably_damaging(0.988) TCGA-AY-6197-01 4 108866507 108866507 A - CYP2U1 Frame_Shift_Del p.K292Rfs*3 0.31 TCGA-AY-6197-01 4 119220088 119220088 G T PRSS12 Missense_Mutation p.P546H 0.34 deleterious(0.01) benign(0.309) TCGA-AY-6197-01 4 119979137 119979137 C T SYNPO2 3'UTR 0.39 TCGA-AY-6197-01 4 122250613 122250613 C A QRFPR Missense_Mutation p.E384D 0.39 tolerated(0.39) benign(0.002) TCGA-AY-6197-01 4 123184002 123184002 G A KIAA1109 Missense_Mutation p.M2282I 0.36 benign(0) TCGA-AY-6197-01 4 126237960 126237960 G A FAT4 Missense_Mutation p.A132T 0.39 benign(0.277) TCGA-AY-6197-01 4 134072873 134072873 C T PCDH10 Silent p.Y526Y 0.41 TCGA-AY-6197-01 4 142143532 142143532 A - ZNF330 Frame_Shift_Del p.K5Rfs*18 0.30 TCGA-AY-6197-01 4 144445622 144445622 T C SMARCA5 Splice_Site p.X174_splice 0.23 TCGA-AY-6197-01 4 145640090 145640090 A G HHIP Missense_Mutation p.K581R 0.06 deleterious(0.04) benign(0.149) TCGA-AY-6197-01 4 146436067 146436067 A G SMAD1 Missense_Mutation p.H101R 0.27 deleterious(0.03) possibly_damaging(0.88) TCGA-AY-6197-01 4 146823556 146823556 G T ZNF827 Silent p.T285T 0.50 TCGA-AY-6197-01 4 147795917 147795917 G A TTC29 Silent p.Y250Y 0.19 TCGA-AY-6197-01 4 149357420 149357420 A C NR3C2 Missense_Mutation p.L198R 0.12 tolerated_low_confidence(0.12) benign(0.036) TCGA-AY-6197-01 4 154197071 154197071 A T TRIM2 Missense_Mutation p.H81L 0.40 deleterious(0.02) possibly_damaging(0.593) TCGA-AY-6197-01 4 154216876 154216876 G A TRIM2 Missense_Mutation p.D400N 0.13 tolerated(0.15) possibly_damaging(0.643) TCGA-AY-6197-01 4 154217072 154217072 T C TRIM2 Missense_Mutation p.V465A 0.15 tolerated(0.13) benign(0.006) TCGA-AY-6197-01 4 154217171 154217171 A T TRIM2 Missense_Mutation p.D498V 0.29 deleterious(0) probably_damaging(0.939) TCGA-AY-6197-01 4 154479516 154479516 T C KIAA0922 Missense_Mutation p.M219T 0.21 tolerated(1) benign(0) TCGA-AY-6197-01 4 154544182 154544182 G A KIAA0922 Missense_Mutation p.S1331N 0.32 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 4 155225926 155225926 A G DCHS2 Missense_Mutation p.Y1379H 0.38 tolerated(0.79) benign(0.002) TCGA-AY-6197-01 4 15692032 15692033 - T FAM200B 3'Flank 0.26 TCGA-AY-6197-01 4 159161481 159161481 G A TMEM144 Missense_Mutation p.G238D 0.39 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 4 15938001 15938001 G A FGFBP1 Silent p.C85C 0.46 TCGA-AY-6197-01 4 170912634 170912634 A G MFAP3L Silent p.P375P 0.33 TCGA-AY-6197-01 4 17528462 17528462 C T CLRN2 Silent p.I152I 0.16 TCGA-AY-6197-01 4 1817468 1817468 C T LETM1 Missense_Mutation p.E665K 0.40 deleterious(0) probably_damaging(0.988) TCGA-AY-6197-01 4 184192371 184192371 C T WWC2 Missense_Mutation p.P847S 0.29 tolerated(0.12) benign(0.014) TCGA-AY-6197-01 4 187535359 187535359 A G FAT1 Missense_Mutation p.L3072P 0.17 possibly_damaging(0.892) TCGA-AY-6197-01 4 187549458 187549458 C T FAT1 Missense_Mutation p.D1554N 0.39 probably_damaging(1) TCGA-AY-6197-01 4 2181073 2181073 C T POLN Missense_Mutation p.V381M 0.34 deleterious(0.05) benign(0.146) TCGA-AY-6197-01 4 24878173 24878175 CTT - CCDC149 In_Frame_Del p.K70del 0.37 TCGA-AY-6197-01 4 26422335 26422335 A - RBPJ Frame_Shift_Del p.N176Mfs*30 0.25 TCGA-AY-6197-01 4 2702138 2702138 A T FAM193A Silent p.P1122P 0.25 TCGA-AY-6197-01 4 2930313 2930313 G A ADD1 3'UTR 0.29 TCGA-AY-6197-01 4 3240621 3240621 C T HTT Missense_Mutation p.T3044M 0.44 probably_damaging(0.999) TCGA-AY-6197-01 4 36283653 36283653 C T DTHD1 5'Flank 0.37 TCGA-AY-6197-01 4 37447379 37447379 T - KIAA1239 Frame_Shift_Del p.W1259Gfs*22 0.31 TCGA-AY-6197-01 4 39839612 39839612 T C PDS5A Missense_Mutation p.I1292V 0.06 tolerated_low_confidence(0.43) benign(0) TCGA-AY-6197-01 4 39929664 39929664 G A PDS5A Missense_Mutation p.R87C 0.10 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 4 42580397 42580397 G A ATP8A1 Silent p.G336G 0.28 TCGA-AY-6197-01 4 55129961 55129961 G - PDGFRA Frame_Shift_Del p.V167Wfs*18 0.32 TCGA-AY-6197-01 4 5570323 5570323 G A EVC2 Silent p.P1135P 0.39 TCGA-AY-6197-01 4 56750062 56750062 T C EXOC1 Missense_Mutation p.M433T 0.05 tolerated(0.12) possibly_damaging(0.636) TCGA-AY-6197-01 4 57333819 57333820 - G SRP72 Frame_Shift_Ins p.V9Gfs*9 0.38 TCGA-AY-6197-01 4 57797719 57797719 G A REST Missense_Mutation p.A899T 0.12 tolerated(0.31) benign(0.001) TCGA-AY-6197-01 4 62775446 62775446 G T LPHN3 Missense_Mutation p.A618S 0.36 tolerated(0.16) benign(0.256) TCGA-AY-6197-01 4 6612980 6612980 C T MAN2B2 Silent p.P846P 0.33 TCGA-AY-6197-01 4 66270109 66270109 G A EPHA5 Silent p.G591G 0.29 TCGA-AY-6197-01 4 6719300 6719300 G A BLOC1S4 3'UTR 0.39 TCGA-AY-6197-01 4 72306443 72306443 G A SLC4A4 Silent p.Q306Q 0.17 TCGA-AY-6197-01 4 72423456 72423456 A G SLC4A4 Missense_Mutation p.M931V 0.43 deleterious(0.01) probably_damaging(0.955) TCGA-AY-6197-01 4 74863941 74863941 C T CXCL5 Missense_Mutation p.C75Y 0.20 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 4 75482053 75482053 C T AREGB Missense_Mutation p.R37C 0.37 deleterious(0.01) possibly_damaging(0.646) TCGA-AY-6197-01 4 76841121 76841121 C T NAAA Missense_Mutation p.A304T 0.31 deleterious(0.01) possibly_damaging(0.77) TCGA-AY-6197-01 4 76924776 76924776 C T CXCL9 Missense_Mutation p.R118H 0.11 tolerated(0.36) unknown(0) TCGA-AY-6197-01 4 79284779 79284779 C T FRAS1 Silent p.D845D 0.10 TCGA-AY-6197-01 4 79334192 79334192 A C FRAS1 Missense_Mutation p.T1460P 0.07 benign(0.323) TCGA-AY-6197-01 4 81207838 81207838 G A FGF5 3'UTR 0.21 TCGA-AY-6197-01 4 8224604 8224604 T C SH3TC1 Missense_Mutation p.S384P 0.14 deleterious(0.04) possibly_damaging(0.809) TCGA-AY-6197-01 4 84230047 84230047 A G HPSE Missense_Mutation p.Y348H 0.07 deleterious(0.04) probably_damaging(0.964) TCGA-AY-6197-01 4 85729570 85729570 A G WDFY3 Silent p.S782S 0.24 TCGA-AY-6197-01 4 87797559 87797559 C T RP11-397E7.2 RNA 0.13 TCGA-AY-6197-01 4 88035721 88035721 G A AFF1 Missense_Mutation p.R579Q 0.12 deleterious(0.04) unknown(0) TCGA-AY-6197-01 4 89628197 89628197 T - HERC3 3'UTR 0.29 TCGA-AY-6197-01 4 89653197 89653197 T A FAM13A Missense_Mutation p.K933N 0.06 deleterious(0.01) probably_damaging(0.917) TCGA-AY-6197-01 4 9785349 9785349 G C DRD5 3'UTR 0.18 TCGA-AY-6197-01 4 9785421 9785421 G T DRD5 3'UTR 0.09 TCGA-AY-6197-01 4 99358118 99358118 C T RAP1GDS1 Missense_Mutation p.A533V 0.40 deleterious(0.05) possibly_damaging(0.782) TCGA-AY-6197-01 5 10391660 10391660 G A MARCH6 Missense_Mutation p.A195T 0.30 tolerated(0.38) benign(0.039) TCGA-AY-6197-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.31 TCGA-AY-6197-01 5 112175788 112175789 - T APC Frame_Shift_Ins p.S1501Ffs*13 0.38 TCGA-AY-6197-01 5 112176404 112176404 A C APC Missense_Mutation p.T1705P 0.24 benign(0) TCGA-AY-6197-01 5 112227640 112227640 A - ZRSR1 Frame_Shift_Del p.K103Nfs*3 0.38 TCGA-AY-6197-01 5 115323513 115323513 C T AQPEP Missense_Mutation p.R328C 0.34 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 5 122425735 122425735 G A PRDM6 Missense_Mutation p.G9D 0.15 deleterious_low_confidence(0) unknown(0) TCGA-AY-6197-01 5 122881414 122881414 T C CSNK1G3 Silent p.S19S 0.37 TCGA-AY-6197-01 5 125928374 125928374 T G ALDH7A1 Silent p.A98A 0.06 TCGA-AY-6197-01 5 126674906 126674906 C T MEGF10 Missense_Mutation p.R71W 0.34 deleterious(0) possibly_damaging(0.792) TCGA-AY-6197-01 5 128956361 128956361 A G ADAMTS19 Missense_Mutation p.H504R 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-AY-6197-01 5 131080258 131080258 G A FNIP1 Missense_Mutation p.S73L 0.35 tolerated(0.29) benign(0.16) TCGA-AY-6197-01 5 131598427 131598427 C T PDLIM4 Silent p.H73H 0.38 TCGA-AY-6197-01 5 132535458 132535458 C T FSTL4 Missense_Mutation p.A620T 0.36 tolerated(0.06) benign(0.081) TCGA-AY-6197-01 5 133685991 133685991 G A CDKL3 Missense_Mutation p.T163I 0.36 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 5 134192662 134192662 T - C5orf24 3'UTR 0.36 TCGA-AY-6197-01 5 134332082 134332083 TA - CATSPER3 Frame_Shift_Del p.M125Vfs*21 0.33 TCGA-AY-6197-01 5 134347362 134347362 T C CATSPER3 3'UTR 0.36 TCGA-AY-6197-01 5 139815728 139815728 C A ANKHD1 Missense_Mutation p.P116T 0.37 unknown(0) TCGA-AY-6197-01 5 139818083 139818083 T A ANKHD1 Missense_Mutation p.F166L 0.05 unknown(0) TCGA-AY-6197-01 5 140237892 140237892 G A PCDHA10 Silent p.R753R 0.13 TCGA-AY-6197-01 5 140517110 140517110 G A PCDHB5 Silent p.S698S 0.40 TCGA-AY-6197-01 5 140517638 140517639 - T PCDHB5 3'UTR 0.38 TCGA-AY-6197-01 5 140595825 140595825 G A PCDHB13 Silent p.A710A 0.45 TCGA-AY-6197-01 5 140625477 140625477 A - PCDHB15 Frame_Shift_Del p.K112Nfs*11 0.11 TCGA-AY-6197-01 5 14487619 14487619 C G TRIO Silent p.G2294G 0.32 TCGA-AY-6197-01 5 150075168 150075168 G A RBM22 Missense_Mutation p.R216W 0.38 tolerated(0.07) probably_damaging(0.995) TCGA-AY-6197-01 5 153433264 153433264 T G MFAP3 Missense_Mutation p.C360W 0.40 deleterious_low_confidence(0.03) benign(0.315) TCGA-AY-6197-01 5 154280908 154280908 T C GEMIN5 Missense_Mutation p.H1002R 0.20 tolerated(0.43) benign(0.434) TCGA-AY-6197-01 5 156752564 156752564 C T CYFIP2 Nonsense_Mutation p.R608* 0.36 TCGA-AY-6197-01 5 159822094 159822094 T - C5orf54 Frame_Shift_Del p.K135Sfs*11 0.30 TCGA-AY-6197-01 5 162944649 162944649 C T MAT2B Missense_Mutation p.A268V 0.25 tolerated(0.5) benign(0.308) TCGA-AY-6197-01 5 167553803 167553803 G A TENM2 Missense_Mutation p.G752R 0.17 deleterious(0) probably_damaging(0.984) TCGA-AY-6197-01 5 169188631 169188631 T C DOCK2 Splice_Site p.X852_splice 0.36 TCGA-AY-6197-01 5 170876252 170876252 G T FGF18 Missense_Mutation p.G118W 0.37 deleterious(0) possibly_damaging(0.907) TCGA-AY-6197-01 5 172396621 172396621 G A RPL26L1 3'UTR 0.30 TCGA-AY-6197-01 5 175394164 175394164 C T THOC3 Missense_Mutation p.R125H 0.20 deleterious(0) possibly_damaging(0.85) TCGA-AY-6197-01 5 179290989 179290989 C T TBC1D9B Missense_Mutation p.R1071H 0.30 tolerated(0.18) benign(0.001) TCGA-AY-6197-01 5 32048762 32048762 A G PDZD2 Missense_Mutation p.Q546R 0.09 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 5 33577194 33577194 G A ADAMTS12 Silent p.C979C 0.15 TCGA-AY-6197-01 5 37352874 37352874 A G NUP155 Missense_Mutation p.V174A 0.26 deleterious(0) possibly_damaging(0.626) TCGA-AY-6197-01 5 38407192 38407192 G - EGFLAM Frame_Shift_Del p.G366Afs*32 0.33 TCGA-AY-6197-01 5 38876474 38876474 T C OSMR Missense_Mutation p.V82A 0.41 tolerated(0.16) benign(0.01) TCGA-AY-6197-01 5 40765292 40765292 C A PRKAA1 Missense_Mutation p.E305D 0.21 tolerated(0.14) probably_damaging(0.968) TCGA-AY-6197-01 5 40777622 40777622 C T PRKAA1 Missense_Mutation p.S65N 0.05 tolerated(0.46) benign(0.105) TCGA-AY-6197-01 5 40841499 40841499 T C CARD6 Silent p.S5S 0.29 TCGA-AY-6197-01 5 52214576 52214576 C T ITGA1 Missense_Mutation p.A668V 0.32 deleterious(0.01) probably_damaging(0.971) TCGA-AY-6197-01 5 5239940 5239940 T C ADAMTS16 Missense_Mutation p.Y809H 0.44 tolerated(0.25) benign(0.159) TCGA-AY-6197-01 5 54277897 54277897 C T ESM1 Missense_Mutation p.G127R 0.08 deleterious(0) probably_damaging(0.992) TCGA-AY-6197-01 5 60188582 60188582 G A ERCC8 Intron 0.10 TCGA-AY-6197-01 5 63256563 63256563 G A HTR1A Silent p.N328N 0.15 TCGA-AY-6197-01 5 71492666 71492666 A G MAP1B Missense_Mutation p.I1162V 0.35 benign(0.012) TCGA-AY-6197-01 5 75914029 75914029 G A F2RL2 Missense_Mutation p.A168V 0.31 tolerated(1) benign(0.015) TCGA-AY-6197-01 5 80409595 80409595 T G RASGRF2 Missense_Mutation p.S776A 0.37 tolerated_low_confidence(0.12) benign(0.314) TCGA-AY-6197-01 5 82491704 82491704 T C XRCC4 Missense_Mutation p.L144P 0.08 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 5 884147 884147 G A BRD9 Missense_Mutation p.T291M 0.34 deleterious(0.03) possibly_damaging(0.726) TCGA-AY-6197-01 5 89948183 89948183 A G GPR98 Missense_Mutation p.Y1146C 0.18 benign(0) TCGA-AY-6197-01 5 90072379 90072379 T C GPR98 Silent p.G4171G 0.15 TCGA-AY-6197-01 5 9066727 9066727 G T SEMA5A Missense_Mutation p.P702H 0.38 deleterious(0) probably_damaging(0.95) TCGA-AY-6197-01 5 95067839 95067839 T - RHOBTB3 Intron 0.24 TCGA-AY-6197-01 6 100897291 100897291 A G SIM1 Missense_Mutation p.M164T 0.41 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 6 101847087 101847087 A G GRIK2 5'UTR 0.24 TCGA-AY-6197-01 6 105771602 105771602 G A PREP Missense_Mutation p.P419S 0.38 tolerated(0.21) benign(0.021) TCGA-AY-6197-01 6 107391601 107391602 - C BEND3 Frame_Shift_Ins p.D265Gfs*95 0.09 TCGA-AY-6197-01 6 10796327 10796327 C T MAK Silent p.P349P 0.39 TCGA-AY-6197-01 6 10913146 10913146 A G SYCP2L Missense_Mutation p.N353S 0.14 tolerated(0.44) benign(0.161) TCGA-AY-6197-01 6 109894762 109894762 T A AK9 Missense_Mutation p.I743F 0.39 tolerated(0.14) benign(0) TCGA-AY-6197-01 6 111695260 111695260 G A REV3L Missense_Mutation p.A1433V 0.40 deleterious_low_confidence(0.05) benign(0.073) TCGA-AY-6197-01 6 112671296 112671296 A G RFPL4B Missense_Mutation p.D129G 0.31 tolerated(0.13) benign(0.014) TCGA-AY-6197-01 6 12122336 12122336 C T HIVEP1 Missense_Mutation p.R770W 0.20 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 6 126210860 126210860 G - NCOA7 Frame_Shift_Del p.G555Efs*2 0.13 TCGA-AY-6197-01 6 127517093 127517093 C A RSPO3 Missense_Mutation p.Q254K 0.37 tolerated(1) unknown(0) TCGA-AY-6197-01 6 128540089 128540089 A T PTPRK Missense_Mutation p.N282K 0.12 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 6 130762082 130762082 C T TMEM200A Missense_Mutation p.T172M 0.36 deleterious(0.02) benign(0.128) TCGA-AY-6197-01 6 133048013 133048015 CCA - VNN3 Intron 0.36 TCGA-AY-6197-01 6 136990525 136990525 T - MAP3K5 Frame_Shift_Del p.K421Rfs*37 0.28 TCGA-AY-6197-01 6 139487614 139487614 C G HECA Missense_Mutation p.N155K 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-AY-6197-01 6 139694895 139694895 T C CITED2 Missense_Mutation p.M63V 0.14 tolerated(0.14) benign(0.025) TCGA-AY-6197-01 6 149699797 149699797 A G TAB2 Missense_Mutation p.Q249R 0.40 deleterious(0.04) benign(0.427) TCGA-AY-6197-01 6 149862653 149862653 A G PPIL4 Splice_Site p.X46_splice 0.16 TCGA-AY-6197-01 6 152510481 152510481 T A SYNE1 Missense_Mutation p.D7736V 0.10 benign(0.16) TCGA-AY-6197-01 6 152639375 152639375 G A SYNE1 Silent p.G5471G 0.37 TCGA-AY-6197-01 6 153365046 153365046 G A RGS17 Silent p.C36C 0.41 TCGA-AY-6197-01 6 154411264 154411264 A G OPRM1 Silent p.S291S 0.46 TCGA-AY-6197-01 6 154535390 154535390 G A IPCEF1 Missense_Mutation p.S138L 0.37 tolerated(1) benign(0) TCGA-AY-6197-01 6 15497226 15497226 C - JARID2 Frame_Shift_Del p.P592Lfs*57 0.41 TCGA-AY-6197-01 6 158900825 158900825 C T TULP4 Silent p.L357L 0.44 TCGA-AY-6197-01 6 163987695 163987695 T - QKI Intron 0.12 TCGA-AY-6197-01 6 163987932 163987933 - T QKI Intron 0.40 TCGA-AY-6197-01 6 163991868 163991868 C T QKI 3'UTR 0.44 TCGA-AY-6197-01 6 167347625 167347625 C T RNASET2 Splice_Site p.X149_splice 0.24 TCGA-AY-6197-01 6 168312099 168312099 C A MLLT4 Missense_Mutation p.P656H 0.33 deleterious(0.04) probably_damaging(0.967) TCGA-AY-6197-01 6 170104006 170104006 A - PHF10 3'UTR 0.35 TCGA-AY-6197-01 6 17292149 17292149 T C RBM24 Silent p.A170A 0.30 TCGA-AY-6197-01 6 17675207 17675207 G T NUP153 Missense_Mutation p.P261T 0.25 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 6 17987654 17987654 G T KIF13A Missense_Mutation p.P14H 0.37 deleterious(0.01) probably_damaging(1) TCGA-AY-6197-01 6 18256633 18256633 T - DEK Frame_Shift_Del p.G138Efs*12 0.28 TCGA-AY-6197-01 6 20128975 20128975 C T MBOAT1 Missense_Mutation p.R162Q 0.10 tolerated(0.08) benign(0.037) TCGA-AY-6197-01 6 24601320 24601320 G - KIAA0319 Frame_Shift_Del p.T5Qfs*11 0.21 TCGA-AY-6197-01 6 25916939 25916939 T C SLC17A2 Missense_Mutation p.T302A 0.39 deleterious(0.01) benign(0.016) TCGA-AY-6197-01 6 26285518 26285518 A T HIST1H4H Silent p.A70A 0.18 TCGA-AY-6197-01 6 26285659 26285660 - A HIST1H4H Frame_Shift_Ins p.L23Ffs*4 0.31 TCGA-AY-6197-01 6 27840961 27840961 T C HIST1H4L 3'UTR 0.26 TCGA-AY-6197-01 6 28543436 28543436 C T SCAND3 Missense_Mutation p.C349Y 0.36 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-AY-6197-01 6 29432064 29432064 T - OR2H1 3'UTR 0.27 TCGA-AY-6197-01 6 29599292 29599292 A G GABBR1 Missense_Mutation p.L57P 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AY-6197-01 6 29796066 29796066 C T HLA-G Missense_Mutation p.R106C 0.43 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-AY-6197-01 6 30610714 30610714 C - ATAT1 Frame_Shift_Del p.P288Hfs*31 0.31 TCGA-AY-6197-01 6 30613720 30613721 - G ATAT1 Frame_Shift_Ins p.V330Gfs*23 0.35 TCGA-AY-6197-01 6 30619174 30619174 G A C6orf136 Missense_Mutation p.R413Q 0.31 deleterious(0) possibly_damaging(0.902) TCGA-AY-6197-01 6 30657174 30657174 C T NRM Missense_Mutation p.R129Q 0.41 tolerated(0.2) benign(0.013) TCGA-AY-6197-01 6 30882664 30882664 G A VARS2 Silent p.R47R 0.44 TCGA-AY-6197-01 6 31138204 31138204 G - POU5F1 Frame_Shift_Del p.P65Rfs*20 0.33 TCGA-AY-6197-01 6 31744345 31744345 G - VWA7 Frame_Shift_Del p.P71Lfs*34 0.16 TCGA-AY-6197-01 6 31922391 31922391 C T NELFE Missense_Mutation p.R228Q 0.39 deleterious_low_confidence(0.05) unknown(0) TCGA-AY-6197-01 6 33419593 33419593 G A SYNGAP1 Silent p.P1314P 0.26 TCGA-AY-6197-01 6 33653962 33653962 G A ITPR3 Missense_Mutation p.V1934M 0.29 deleterious(0.01) probably_damaging(0.922) TCGA-AY-6197-01 6 35199583 35199583 G A SCUBE3 Missense_Mutation p.R139Q 0.36 tolerated(0.14) benign(0.266) TCGA-AY-6197-01 6 35747277 35747277 G A CLPSL2 3'UTR 0.14 TCGA-AY-6197-01 6 36449466 36449466 G A KCTD20 Silent p.V262V 0.29 TCGA-AY-6197-01 6 36570034 36570034 T A SRSF3 3'UTR 0.60 TCGA-AY-6197-01 6 38890859 38890859 G A DNAH8 Missense_Mutation p.C3346Y 0.08 probably_damaging(0.996) TCGA-AY-6197-01 6 39855321 39855321 G T DAAM2 Silent p.S671S 0.40 TCGA-AY-6197-01 6 41318497 41318497 G A NCR2 Silent p.T242T 0.32 TCGA-AY-6197-01 6 42935173 42935173 C T PEX6 Missense_Mutation p.R606Q 0.12 tolerated(0.88) benign(0) TCGA-AY-6197-01 6 43020163 43020163 G T CUL7 Missense_Mutation p.L174I 0.36 tolerated(0.41) possibly_damaging(0.81) TCGA-AY-6197-01 6 43038169 43038169 G A KLC4 Silent p.Q337Q 0.38 TCGA-AY-6197-01 6 43099778 43099778 A G PTK7 Silent p.T287T 0.19 TCGA-AY-6197-01 6 43231030 43231030 T C TTBK1 Missense_Mutation p.L643P 0.35 benign(0.014) TCGA-AY-6197-01 6 43267377 43267377 G T SLC22A7 Silent p.R172R 0.44 TCGA-AY-6197-01 6 43578442 43578442 C A POLH Missense_Mutation p.S409Y 0.41 deleterious(0) benign(0.127) TCGA-AY-6197-01 6 44268966 44268966 G A AARS2 Missense_Mutation p.A907V 0.33 tolerated(0.2) benign(0.002) TCGA-AY-6197-01 6 44274848 44274849 GT - AARS2 Intron 0.32 TCGA-AY-6197-01 6 46658609 46658609 A - TDRD6 Frame_Shift_Del p.N917Ifs*2 0.27 TCGA-AY-6197-01 6 46826500 46826500 G A GPR116 Missense_Mutation p.S1047F 0.21 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 6 47646753 47646753 G A GPR111 Silent p.Q118Q 0.22 TCGA-AY-6197-01 6 52762690 52762690 A G GSTA3 Missense_Mutation p.L160P 0.17 deleterious(0) probably_damaging(0.992) TCGA-AY-6197-01 6 55039584 55039584 G A HCRTR2 Missense_Mutation p.V67M 0.36 tolerated(0.13) benign(0.063) TCGA-AY-6197-01 6 56044643 56044643 C T COL21A1 Missense_Mutation p.D125N 0.37 deleterious(0.03) probably_damaging(0.989) TCGA-AY-6197-01 6 56397274 56397274 G A DST Missense_Mutation p.T3036M 0.39 probably_damaging(1) TCGA-AY-6197-01 6 56472400 56472400 A T DST Intron 0.14 TCGA-AY-6197-01 6 6197516 6197516 G T F13A1 Missense_Mutation p.L386I 0.36 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 6 64394553 64394553 A C PHF3 Missense_Mutation p.E310D 0.36 tolerated_low_confidence(0.11) benign(0.002) TCGA-AY-6197-01 6 65767569 65767569 T - EYS Frame_Shift_Del p.N692Mfs*37 0.31 TCGA-AY-6197-01 6 69349200 69349200 G A BAI3 Silent p.S211S 0.35 TCGA-AY-6197-01 6 73843154 73843154 A G KCNQ5 Missense_Mutation p.S439G 0.40 tolerated(0.33) benign(0.013) TCGA-AY-6197-01 6 74190482 74190482 C T MTO1 Missense_Mutation p.A405V 0.38 deleterious(0) probably_damaging(0.909) TCGA-AY-6197-01 6 75823455 75823455 A G COL12A1 Missense_Mutation p.L2568P 0.38 possibly_damaging(0.542) TCGA-AY-6197-01 6 83906095 83906095 A T RWDD2A 3'UTR 0.33 TCGA-AY-6197-01 6 86329126 86329126 G A SYNCRIP Silent p.L340L 0.38 TCGA-AY-6197-01 6 96034843 96034843 G A MANEA Missense_Mutation p.M176I 0.38 tolerated(0.92) benign(0.004) TCGA-AY-6197-01 6 96044722 96044722 G T MANEA Missense_Mutation p.K218N 0.10 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 6 96656406 96656406 A G FUT9 3'UTR 0.29 TCGA-AY-6197-01 6 96660707 96660707 G T FUT9 3'UTR 0.36 TCGA-AY-6197-01 6 97561732 97561732 G A KLHL32 Missense_Mutation p.G234D 0.36 deleterious(0.03) probably_damaging(1) TCGA-AY-6197-01 6 97578797 97578797 G A KLHL32 Nonsense_Mutation p.W526* 0.41 TCGA-AY-6197-01 6 99284221 99284221 A - POU3F2 3'UTR 0.24 TCGA-AY-6197-01 7 100281028 100281028 C G GIGYF1 Missense_Mutation p.E698Q 0.09 deleterious(0.01) unknown(0) TCGA-AY-6197-01 7 100403135 100403135 C T EPHB4 Missense_Mutation p.R889Q 0.22 tolerated(0.61) benign(0.004) TCGA-AY-6197-01 7 100732500 100732500 C T TRIM56 Missense_Mutation p.A636V 0.09 deleterious(0.02) probably_damaging(0.973) TCGA-AY-6197-01 7 102916063 102916063 A G DPY19L2P2 RNA 0.09 TCGA-AY-6197-01 7 105254350 105254350 C T ATXN7L1 Missense_Mutation p.A811T 0.37 deleterious_low_confidence(0.02) benign(0.016) TCGA-AY-6197-01 7 105264684 105264684 G A ATXN7L1 Silent p.S411S 0.36 TCGA-AY-6197-01 7 107393854 107393854 A G CBLL1 Splice_Site p.X61_splice 0.14 TCGA-AY-6197-01 7 107642234 107642234 A - LAMB1 Intron 0.37 TCGA-AY-6197-01 7 110765260 110765260 T - LRRN3 3'UTR 0.34 TCGA-AY-6197-01 7 116165017 116165017 T - CAV1 5'UTR 0.32 TCGA-AY-6197-01 7 117874532 117874532 T G ANKRD7 Missense_Mutation p.L76R 0.10 tolerated(0.07) benign(0.392) TCGA-AY-6197-01 7 119914695 119914695 G - KCND2 Frame_Shift_Del p.V5Wfs*41 0.20 TCGA-AY-6197-01 7 120979136 120979136 A G WNT16 Missense_Mutation p.I279V 0.07 tolerated(0.34) benign(0.032) TCGA-AY-6197-01 7 122342846 122342846 A G RNF148 5'UTR 0.28 TCGA-AY-6197-01 7 127240293 127240293 G A FSCN3 Missense_Mutation p.R446H 0.40 tolerated(0.58) possibly_damaging(0.639) TCGA-AY-6197-01 7 127965944 127965944 C G RBM28 Missense_Mutation p.G377A 0.38 deleterious(0.01) probably_damaging(1) TCGA-AY-6197-01 7 129125745 129125745 C T STRIP2 3'UTR 0.12 TCGA-AY-6197-01 7 130003326 130003326 A G CPA5 Missense_Mutation p.R272G 0.09 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 7 131815121 131815121 C T PLXNA4 3'UTR 0.24 TCGA-AY-6197-01 7 135378949 135378951 TCT - SLC13A4 In_Frame_Del p.K351del 0.20 TCGA-AY-6197-01 7 138453925 138453926 TC - ATP6V0A4 Frame_Shift_Del p.R63Nfs*12 0.34 TCGA-AY-6197-01 7 13975330 13975330 T C ETV1 Intron 0.16 TCGA-AY-6197-01 7 140035210 140035210 G A SLC37A3 3'UTR 0.13 TCGA-AY-6197-01 7 140043246 140043246 T C SLC37A3 Missense_Mutation p.D431G 0.10 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 7 141443403 141443403 C A SSBP1 Missense_Mutation p.P43H 0.27 deleterious(0) probably_damaging(0.998) TCGA-AY-6197-01 7 14775793 14775793 T C DGKB Silent p.L65L 0.14 TCGA-AY-6197-01 7 148511172 148511172 G A EZH2 Missense_Mutation p.P577L 0.35 deleterious(0.04) benign(0.428) TCGA-AY-6197-01 7 148802290 148802290 T A ZNF425 Missense_Mutation p.N225Y 0.33 deleterious(0.02) benign(0.173) TCGA-AY-6197-01 7 149129852 149129852 G - ZNF777 Frame_Shift_Del p.P504Rfs*5 0.40 TCGA-AY-6197-01 7 149431164 149431164 G A KRBA1 3'UTR 0.16 TCGA-AY-6197-01 7 149462736 149462736 C T ZNF467 Silent p.T285T 0.34 TCGA-AY-6197-01 7 149503911 149503911 C - SSPO RNA 0.31 TCGA-AY-6197-01 7 149545387 149545387 G - ZNF862 Frame_Shift_Del p.D271Mfs*9 0.44 TCGA-AY-6197-01 7 150695487 150695487 A G NOS3 Missense_Mutation p.T209A 0.38 deleterious(0.04) benign(0.089) TCGA-AY-6197-01 7 150754040 150754040 C T CDK5 Missense_Mutation p.R50Q 0.35 deleterious(0.02) possibly_damaging(0.812) TCGA-AY-6197-01 7 152551651 152551651 C T ACTR3B 3'UTR 0.30 TCGA-AY-6197-01 7 16131387 16131387 G T ISPD Missense_Mutation p.A430D 0.35 deleterious(0) possibly_damaging(0.703) TCGA-AY-6197-01 7 21628175 21628175 T C DNAH11 Missense_Mutation p.S632P 0.12 possibly_damaging(0.867) TCGA-AY-6197-01 7 21945184 21945184 G A CDCA7L Silent p.T329T 0.22 TCGA-AY-6197-01 7 23871992 23871992 A G STK31 3'UTR 0.47 TCGA-AY-6197-01 7 27181443 27181443 C T HOXA5 3'UTR 0.35 TCGA-AY-6197-01 7 2770936 2770936 C T GNA12 Missense_Mutation p.R342H 0.38 tolerated(0.06) benign(0.123) TCGA-AY-6197-01 7 2987392 2987392 C T CARD11 Missense_Mutation p.E13K 0.41 deleterious_low_confidence(0.01) benign(0.04) TCGA-AY-6197-01 7 29980331 29980331 C A SCRN1 Missense_Mutation p.G256C 0.28 tolerated(0.07) benign(0.001) TCGA-AY-6197-01 7 36336778 36336778 T C EEPD1 Silent p.L498L 0.06 TCGA-AY-6197-01 7 37780717 37780717 A G GPR141 Missense_Mutation p.Y241C 0.05 tolerated(0.06) possibly_damaging(0.585) TCGA-AY-6197-01 7 38433754 38433754 C - AMPH Frame_Shift_Del p.A487Pfs*19 0.26 TCGA-AY-6197-01 7 47945459 47945459 A G PKD1L1 Silent p.T501T 0.12 TCGA-AY-6197-01 7 4825910 4825910 G A AP5Z1 Missense_Mutation p.V388I 0.39 tolerated(0.47) benign(0.026) TCGA-AY-6197-01 7 48349721 48349721 C T ABCA13 Nonsense_Mutation p.R3167* 0.40 TCGA-AY-6197-01 7 5354654 5354654 G T TNRC18 Missense_Mutation p.R2330S 0.36 benign(0.353) TCGA-AY-6197-01 7 5756345 5756345 A G RNF216 Splice_Site p.X565_splice 0.13 TCGA-AY-6197-01 7 5963564 5963564 A - CCZ1 Frame_Shift_Del p.N457Mfs*4 0.34 TCGA-AY-6197-01 7 6194576 6194576 C T USP42 Missense_Mutation p.R1131C 0.45 tolerated(0.11) possibly_damaging(0.809) TCGA-AY-6197-01 7 64169525 64169525 A C ZNF107 3'UTR 0.20 TCGA-AY-6197-01 7 6541522 6541522 G A GRID2IP Missense_Mutation p.R1097W 0.38 deleterious(0.03) possibly_damaging(0.588) TCGA-AY-6197-01 7 66548516 66548516 G A TYW1 Silent p.K458K 0.32 TCGA-AY-6197-01 7 73008146 73008146 G A MLXIPL 3'UTR 0.38 TCGA-AY-6197-01 7 73011800 73011800 T C MLXIPL Missense_Mutation p.T439A 0.34 tolerated(0.6) benign(0.002) TCGA-AY-6197-01 7 73455553 73455553 A G ELN Silent p.G68G 0.24 TCGA-AY-6197-01 7 7412776 7412776 T C COL28A1 Missense_Mutation p.N921D 0.23 tolerated(0.31) benign(0.002) TCGA-AY-6197-01 7 75051111 75051111 G T POM121C Missense_Mutation p.S808R 0.14 deleterious(0) benign(0.11) TCGA-AY-6197-01 7 75630279 75630279 T C STYXL1 Missense_Mutation p.T247A 0.13 tolerated(0.08) benign(0.403) TCGA-AY-6197-01 7 76058841 76058841 G A ZP3 Missense_Mutation p.D108N 0.35 tolerated(0.05) benign(0.154) TCGA-AY-6197-01 7 76134774 76134774 C T DTX2 Silent p.T575T 0.41 TCGA-AY-6197-01 7 81667479 81667479 A G CACNA2D1 Silent p.L318L 0.30 TCGA-AY-6197-01 7 82595507 82595507 T C PCLO Silent p.K1199K 0.16 TCGA-AY-6197-01 7 88965848 88965848 A G ZNF804B Silent p.A1184A 0.20 TCGA-AY-6197-01 7 91691642 91691642 A - AKAP9 Frame_Shift_Del p.T1942Lfs*3 0.26 TCGA-AY-6197-01 7 92734149 92734149 T C SAMD9 Missense_Mutation p.H421R 0.37 deleterious(0) possibly_damaging(0.647) TCGA-AY-6197-01 7 94056941 94056941 C - COL1A2 Frame_Shift_Del p.P1092Lfs*12 0.18 TCGA-AY-6197-01 7 96747169 96747169 T C ACN9 Missense_Mutation p.V45A 0.22 tolerated(0.89) benign(0.058) TCGA-AY-6197-01 7 97821111 97821111 C T LMTK2 Missense_Mutation p.P445L 0.33 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 7 98574213 98574213 C T TRRAP Silent p.C2682C 0.45 TCGA-AY-6197-01 7 99129418 99129418 A - ZKSCAN5 Frame_Shift_Del p.N691Mfs*12 0.31 TCGA-AY-6197-01 7 99473834 99473834 C T OR2AE1 Missense_Mutation p.V275M 0.35 deleterious(0.04) probably_damaging(0.91) TCGA-AY-6197-01 7 99661541 99661541 C T ZSCAN21 Silent p.C241C 0.47 TCGA-AY-6197-01 8 100050671 100050671 T - VPS13B Frame_Shift_Del p.L58* 0.16 TCGA-AY-6197-01 8 100866408 100866408 A G VPS13B Silent p.G3622G 0.21 TCGA-AY-6197-01 8 101585974 101585974 A - SNX31 3'UTR 0.31 TCGA-AY-6197-01 8 103291333 103291333 T C UBR5 Missense_Mutation p.I2035M 0.27 tolerated(0.11) possibly_damaging(0.835) TCGA-AY-6197-01 8 104312456 104312456 T - FZD6 Frame_Shift_Del p.F42Sfs*4 0.22 TCGA-AY-6197-01 8 10464996 10464996 C A RP1L1 Missense_Mutation p.E2204D 0.30 unknown(0) TCGA-AY-6197-01 8 10755900 10755900 G A XKR6 Silent p.G496G 0.24 TCGA-AY-6197-01 8 10755970 10755970 G A XKR6 Missense_Mutation p.A473V 0.34 deleterious(0) probably_damaging(0.996) TCGA-AY-6197-01 8 110441634 110441634 C T PKHD1L1 Silent p.G1022G 0.06 TCGA-AY-6197-01 8 110986256 110986256 C T KCNV1 Missense_Mutation p.R121H 0.31 tolerated(0.24) benign(0.013) TCGA-AY-6197-01 8 114186080 114186080 A T CSMD3 Missense_Mutation p.F194I 0.06 deleterious(0) benign(0.004) TCGA-AY-6197-01 8 118830768 118830768 A G EXT1 Missense_Mutation p.I513T 0.09 deleterious(0) benign(0.283) TCGA-AY-6197-01 8 124042922 124042922 G T DERL1 Missense_Mutation p.P63H 0.29 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 8 124164142 124164142 G A TBC1D31 Missense_Mutation p.R1055H 0.25 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-AY-6197-01 8 124266546 124266546 C T ZHX1 Silent p.T547T 0.26 TCGA-AY-6197-01 8 124369819 124369819 G A ATAD2 Nonsense_Mutation p.R514* 0.10 TCGA-AY-6197-01 8 124664172 124664172 C T KLHL38 Missense_Mutation p.R332H 0.11 tolerated(0.17) benign(0.002) TCGA-AY-6197-01 8 124693535 124693535 A C ANXA13 Missense_Mutation p.V340G 0.05 deleterious(0) probably_damaging(0.937) TCGA-AY-6197-01 8 126079940 126079940 C T KIAA0196 Missense_Mutation p.R391H 0.24 deleterious(0.05) probably_damaging(0.976) TCGA-AY-6197-01 8 133141590 133141590 C T KCNQ3 Silent p.T846T 0.26 TCGA-AY-6197-01 8 141549527 141549528 - A AGO2 Frame_Shift_Ins p.R688Pfs*2 0.28 TCGA-AY-6197-01 8 14181674 14181674 G A SGCZ Nonsense_Mutation p.R92* 0.28 TCGA-AY-6197-01 8 144618525 144618525 G T ZC3H3 Missense_Mutation p.P488H 0.27 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 8 144657119 144657119 G A NAPRT1 Intron 0.26 TCGA-AY-6197-01 8 144657867 144657867 A G NAPRT1 Silent p.S371S 0.18 TCGA-AY-6197-01 8 144995853 144995853 A G PLEC Silent p.V2849V 0.28 TCGA-AY-6197-01 8 145668151 145668151 G A TONSL Missense_Mutation p.R163C 0.31 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 8 145727027 145727027 C - PPP1R16A Frame_Shift_Del p.H445Tfs*15 0.10 TCGA-AY-6197-01 8 15508236 15508236 G A TUSC3 Silent p.A113A 0.29 TCGA-AY-6197-01 8 16850428 16850428 T - FGF20 3'UTR 0.40 TCGA-AY-6197-01 8 16859568 16859569 - C FGF20 5'UTR 0.26 TCGA-AY-6197-01 8 17819576 17819576 A - PCM1 Frame_Shift_Del p.K787Nfs*31 0.23 TCGA-AY-6197-01 8 17823579 17823579 T C PCM1 Missense_Mutation p.I976T 0.27 tolerated(0.43) benign(0.108) TCGA-AY-6197-01 8 19677113 19677113 T C INTS10 Missense_Mutation p.V76A 0.07 deleterious(0.01) possibly_damaging(0.546) TCGA-AY-6197-01 8 2021512 2021512 G A MYOM2 Missense_Mutation p.G351D 0.08 deleterious(0.02) probably_damaging(0.956) TCGA-AY-6197-01 8 21955801 21955801 C T FAM160B2 Missense_Mutation p.L250F 0.32 deleterious(0.03) benign(0.151) TCGA-AY-6197-01 8 22147428 22147428 T G PIWIL2 Missense_Mutation p.L352R 0.28 deleterious(0) probably_damaging(0.971) TCGA-AY-6197-01 8 22458501 22458501 T C AC037459.4 Silent p.G118G 0.34 TCGA-AY-6197-01 8 23153489 23153489 G A R3HCC1 Missense_Mutation p.R214H 0.24 tolerated(0.69) benign(0.004) TCGA-AY-6197-01 8 24339816 24339816 A G ADAM7 Silent p.V289V 0.51 TCGA-AY-6197-01 8 24365049 24365049 G A ADAM7 Splice_Site p.X755_splice 0.33 TCGA-AY-6197-01 8 24774808 24774808 G A NEFM Silent p.L480L 0.28 TCGA-AY-6197-01 8 25343297 25343297 T C CDCA2 Missense_Mutation p.V463A 0.06 tolerated(0.05) benign(0.384) TCGA-AY-6197-01 8 26721837 26721837 C - ADRA1A Frame_Shift_Del p.G217Afs*16 0.29 TCGA-AY-6197-01 8 26722238 26722238 G A ADRA1A Silent p.S83S 0.07 TCGA-AY-6197-01 8 27288527 27288527 A T PTK2B Missense_Mutation p.E268D 0.30 tolerated(0.36) benign(0.008) TCGA-AY-6197-01 8 27649528 27649528 G A ESCO2 Missense_Mutation p.V438M 0.26 deleterious(0) possibly_damaging(0.776) TCGA-AY-6197-01 8 28196933 28196933 G A PNOC Missense_Mutation p.R168H 0.27 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-AY-6197-01 8 30655116 30655116 G A PPP2CB Missense_Mutation p.T156I 0.29 deleterious(0) possibly_damaging(0.879) TCGA-AY-6197-01 8 30703840 30703840 T - TEX15 Frame_Shift_Del p.K898Nfs*15 0.20 TCGA-AY-6197-01 8 3081362 3081362 G - CSMD1 Frame_Shift_Del p.P1458Qfs*24 0.08 TCGA-AY-6197-01 8 32453511 32453511 A - NRG1 Frame_Shift_Del p.K91Sfs*24 0.22 TCGA-AY-6197-01 8 37730180 37730181 - T RAB11FIP1 Frame_Shift_Ins p.Q714Tfs*22 0.26 TCGA-AY-6197-01 8 38205168 38205168 T C WHSC1L1 Silent p.G174G 0.04 TCGA-AY-6197-01 8 38374007 38374007 C A C8orf86 Missense_Mutation p.W113C 0.27 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-AY-6197-01 8 38646225 38646225 G A TACC1 Silent p.S55S 0.26 TCGA-AY-6197-01 8 40011006 40011007 CT - C8orf4 5'UTR 0.27 TCGA-AY-6197-01 8 42586907 42586907 T A CHRNB3 Missense_Mutation p.C153S 0.27 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 8 42587591 42587591 C A CHRNB3 Missense_Mutation p.L381I 0.25 tolerated(0.46) benign(0.001) TCGA-AY-6197-01 8 42958959 42958959 G A POMK Missense_Mutation p.G90R 0.24 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 8 48686683 48686683 G T PRKDC 3'UTR 0.07 TCGA-AY-6197-01 8 48842411 48842411 A G PRKDC Splice_Site p.X684_splice 0.20 TCGA-AY-6197-01 8 53569498 53569498 T - RB1CC1 Frame_Shift_Del p.K964Sfs*13 0.24 TCGA-AY-6197-01 8 623568 623568 C T ERICH1 Missense_Mutation p.G262R 0.23 tolerated_low_confidence(0.15) possibly_damaging(0.883) TCGA-AY-6197-01 8 70674019 70674019 A G SLCO5A1 Silent p.P333P 0.22 TCGA-AY-6197-01 8 77765886 77765887 - T ZFHX4 Frame_Shift_Ins p.D2246* 0.25 TCGA-AY-6197-01 8 77768340 77768340 G A ZFHX4 Silent p.Q3061Q 0.28 TCGA-AY-6197-01 8 77896210 77896210 T C PEX2 Missense_Mutation p.I69V 0.27 tolerated(0.92) benign(0.012) TCGA-AY-6197-01 8 88884172 88884173 - T DCAF4L2 3'UTR 0.21 TCGA-AY-6197-01 8 88885904 88885904 T C DCAF4L2 Missense_Mutation p.Y99C 0.07 deleterious(0) probably_damaging(0.987) TCGA-AY-6197-01 8 88886052 88886052 G A DCAF4L2 Missense_Mutation p.R50C 0.30 deleterious(0) possibly_damaging(0.886) TCGA-AY-6197-01 8 92972348 92972348 T C RUNX1T1 3'Flank 0.30 TCGA-AY-6197-01 8 95677232 95677232 A G ESRP1 Missense_Mutation p.H278R 0.11 deleterious(0) possibly_damaging(0.833) TCGA-AY-6197-01 8 9577909 9577909 A G TNKS Missense_Mutation p.Q592R 0.21 tolerated(0.22) probably_damaging(0.989) TCGA-AY-6197-01 8 95800225 95800225 T C DPY19L4 Missense_Mutation p.V651A 0.09 tolerated(0.45) benign(0.243) TCGA-AY-6197-01 8 99146813 99146813 A G POP1 Missense_Mutation p.K313E 0.08 deleterious(0) possibly_damaging(0.611) TCGA-AY-6197-01 8 99162778 99162778 G A POP1 Silent p.S656S 0.08 TCGA-AY-6197-01 9 101748152 101748152 C A COL15A1 Missense_Mutation p.L136I 0.31 deleterious(0.03) probably_damaging(0.97) TCGA-AY-6197-01 9 102625928 102625928 A - NR4A3 Frame_Shift_Del p.R565Efs*13 0.10 TCGA-AY-6197-01 9 104324622 104324622 G A RNF20 Missense_Mutation p.R949H 0.36 deleterious(0) probably_damaging(0.997) TCGA-AY-6197-01 9 107550738 107550738 A - ABCA1 Frame_Shift_Del p.L2013* 0.14 TCGA-AY-6197-01 9 112144729 112144729 T G PTPN3 Splice_Site p.X795_splice 0.23 TCGA-AY-6197-01 9 114090630 114090630 G A OR2K2 Silent p.F28F 0.35 TCGA-AY-6197-01 9 116041246 116041246 A C PRPF4 Missense_Mutation p.E77A 0.38 tolerated(0.22) benign(0.003) TCGA-AY-6197-01 9 116858411 116858411 C G KIF12 Missense_Mutation p.S134T 0.32 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 9 117071593 117071593 C T COL27A1 Silent p.S1757S 0.35 TCGA-AY-6197-01 9 117169166 117169166 C T DFNB31 Missense_Mutation p.V569I 0.21 tolerated_low_confidence(0.13) benign(0.021) TCGA-AY-6197-01 9 117848733 117848734 - CA TNC Frame_Shift_Ins p.D426Vfs*44 0.20 TCGA-AY-6197-01 9 123921147 123921147 G A CNTRL Silent p.Q1593Q 0.18 TCGA-AY-6197-01 9 125084925 125084925 A C MRRF 3'UTR 0.35 TCGA-AY-6197-01 9 125273548 125273548 C A OR1J2 Silent p.S156S 0.38 TCGA-AY-6197-01 9 125637422 125637422 A G RC3H2 Intron 0.18 TCGA-AY-6197-01 9 128104505 128104505 A G GAPVD1 Missense_Mutation p.I1018M 0.18 tolerated(0.14) benign(0.093) TCGA-AY-6197-01 9 128117028 128117028 G A GAPVD1 Missense_Mutation p.R1249Q 0.40 tolerated(0.18) benign(0.04) TCGA-AY-6197-01 9 130505228 130505228 C A SH2D3C Missense_Mutation p.G606C 0.44 tolerated(0.06) possibly_damaging(0.469) TCGA-AY-6197-01 9 130928458 130928458 G A CIZ1 3'UTR 0.45 TCGA-AY-6197-01 9 13113030 13113030 T G MPDZ Silent p.R1832R 0.36 TCGA-AY-6197-01 9 13250331 13250331 T C MPDZ 5'UTR 0.13 TCGA-AY-6197-01 9 132620779 132620779 A C USP20 Missense_Mutation p.T78P 0.35 deleterious(0) possibly_damaging(0.908) TCGA-AY-6197-01 9 133760001 133760001 T C ABL1 Missense_Mutation p.V794A 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-AY-6197-01 9 133932374 133932374 A C LAMC3 Silent p.P666P 0.36 TCGA-AY-6197-01 9 134349884 134349884 G A PRRC2B Missense_Mutation p.V790I 0.39 tolerated(0.33) benign(0.002) TCGA-AY-6197-01 9 135763804 135763804 C T C9orf9 Missense_Mutation p.P159S 0.17 tolerated_low_confidence(0.11) possibly_damaging(0.69) TCGA-AY-6197-01 9 135797300 135797300 C T TSC1 Missense_Mutation p.R190H 0.15 deleterious(0) probably_damaging(0.993) TCGA-AY-6197-01 9 136277528 136277528 G A REXO4 Silent p.I267I 0.31 TCGA-AY-6197-01 9 139311251 139311251 G A PMPCA Intron 0.21 TCGA-AY-6197-01 9 139342868 139342868 G - SEC16A Intron 0.28 TCGA-AY-6197-01 9 139848656 139848656 G T LCN12 Missense_Mutation p.G167C 0.10 tolerated(0.16) benign(0.018) TCGA-AY-6197-01 9 140076156 140076156 G A ANAPC2 Missense_Mutation p.P482L 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-AY-6197-01 9 140166983 140166983 G A NELFB Silent p.A504A 0.35 TCGA-AY-6197-01 9 141016353 141016353 C T CACNA1B Missense_Mutation p.R2308C 0.35 tolerated(0.05) benign(0.033) TCGA-AY-6197-01 9 14150141 14150141 T C NFIB Intron 0.39 TCGA-AY-6197-01 9 15474030 15474032 CTT - PSIP1 In_Frame_Del p.E278del 0.41 TCGA-AY-6197-01 9 17394908 17394908 A G CNTLN Missense_Mutation p.Y819C 0.19 tolerated(0.41) benign(0.001) TCGA-AY-6197-01 9 19336729 19336729 A G DENND4C Intron 0.23 TCGA-AY-6197-01 9 19358093 19358094 TT - DENND4C Frame_Shift_Del p.F1650Yfs*12 0.32 TCGA-AY-6197-01 9 32488833 32488833 T - DDX58 Frame_Shift_Del p.K284Nfs*63 0.20 TCGA-AY-6197-01 9 32544122 32544122 T - TOPORS Frame_Shift_Del p.N134Tfs*19 0.22 TCGA-AY-6197-01 9 32631512 32631512 G A TAF1L Missense_Mutation p.R1356C 0.38 deleterious(0) probably_damaging(0.987) TCGA-AY-6197-01 9 33048132 33048132 A G SMU1 Missense_Mutation p.V472A 0.17 tolerated(0.99) benign(0) TCGA-AY-6197-01 9 34017046 34017046 A G UBAP2 Splice_Site p.X33_splice 0.37 TCGA-AY-6197-01 9 34656805 34656805 T C IL11RA Silent p.H77H 0.42 TCGA-AY-6197-01 9 34997369 34997369 A - DNAJB5 3'UTR 0.28 TCGA-AY-6197-01 9 35547571 35547571 C T RUSC2 Silent p.C351C 0.42 TCGA-AY-6197-01 9 35685082 35685082 G A TPM2 Silent p.S206S 0.43 TCGA-AY-6197-01 9 35739674 35739675 AC - GBA2 Frame_Shift_Del p.C511Sfs*16 0.31 TCGA-AY-6197-01 9 35906908 35906908 T C HRCT1 3'UTR 0.09 TCGA-AY-6197-01 9 38395753 38395753 G A ALDH1B1 Missense_Mutation p.R3H 0.39 deleterious_low_confidence(0.03) benign(0.002) TCGA-AY-6197-01 9 429811 429811 C T DOCK8 Missense_Mutation p.A1528V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-AY-6197-01 9 5339764 5339764 C A RLN1 5'UTR 0.26 TCGA-AY-6197-01 9 6014813 6014813 A G RANBP6 Silent p.D265D 0.35 TCGA-AY-6197-01 9 6477715 6477715 C A UHRF2 Missense_Mutation p.P356H 0.06 deleterious(0) probably_damaging(0.999) TCGA-AY-6197-01 9 71668112 71668112 C T FXN Missense_Mutation p.A107V 0.20 deleterious(0.02) benign(0.288) TCGA-AY-6197-01 9 77598629 77598629 A G C9orf41 3'UTR 0.45 TCGA-AY-6197-01 9 79117833 79117833 C T GCNT1 Missense_Mutation p.A179V 0.38 tolerated(0.14) probably_damaging(0.985) TCGA-AY-6197-01 9 79119446 79119446 A G GCNT1 3'UTR 0.06 TCGA-AY-6197-01 9 93606452 93606452 A G SYK Missense_Mutation p.Y91C 0.15 deleterious(0) probably_damaging(0.995) TCGA-AY-6197-01 9 94985657 94985657 T C IARS Missense_Mutation p.N1175S 0.19 deleterious_low_confidence(0) benign(0.407) TCGA-AY-6197-01 9 95480987 95480987 C T BICD2 Missense_Mutation p.R647H 0.21 tolerated(0.05) possibly_damaging(0.736) TCGA-AY-6197-01 9 96418817 96418817 T C PHF2 Missense_Mutation p.F363L 0.12 deleterious(0) unknown(0) TCGA-AY-6197-01 9 97844998 97844998 C T C9orf3 3'UTR 0.10 TCGA-AY-6197-01 X 100183111 100183111 A G XKRX Silent p.N61N 0.55 TCGA-AY-6197-01 X 101913320 101913321 - TA GPRASP1 3'UTR 0.39 TCGA-AY-6197-01 X 102338377 102338377 G C NXF3 Silent p.A163A 0.28 TCGA-AY-6197-01 X 112024270 112024270 G A AMOT Missense_Mutation p.P773S 0.70 unknown(0) TCGA-AY-6197-01 X 123019859 123019859 A G XIAP Missense_Mutation p.K116R 0.19 tolerated(1) benign(0.001) TCGA-AY-6197-01 X 128641992 128641993 - T SMARCA1 Frame_Shift_Ins p.S298Ifs*14 0.46 TCGA-AY-6197-01 X 129147350 129147350 C - BCORL1 Frame_Shift_Del p.P202Lfs*51 0.49 TCGA-AY-6197-01 X 129201151 129201151 T C ELF4 Missense_Mutation p.S513G 0.16 tolerated(0.4) probably_damaging(0.978) TCGA-AY-6197-01 X 129203477 129203477 G A ELF4 Nonsense_Mutation p.R329* 0.75 TCGA-AY-6197-01 X 129546565 129546565 C A RBMX2 Missense_Mutation p.L238I 0.35 tolerated(0.2) benign(0.006) TCGA-AY-6197-01 X 138642941 138642941 T C F9 Silent p.S255S 0.08 TCGA-AY-6197-01 X 14861871 14861871 C T FANCB Missense_Mutation p.A800T 0.80 tolerated(0.22) benign(0.014) TCGA-AY-6197-01 X 150840999 150840999 T C PASD1 Silent p.S594S 0.06 TCGA-AY-6197-01 X 150869277 150869277 G T PRRG3 Missense_Mutation p.Q156H 0.37 tolerated(0.11) benign(0.002) TCGA-AY-6197-01 X 152482679 152482679 C T MAGEA1 Missense_Mutation p.G111D 0.48 tolerated(0.11) benign(0.102) TCGA-AY-6197-01 X 152613161 152613161 G A ZNF275 Intron 0.08 TCGA-AY-6197-01 X 152815704 152815704 C T ATP2B3 Missense_Mutation p.R595C 0.80 deleterious(0.01) probably_damaging(0.932) TCGA-AY-6197-01 X 153187088 153187088 A G ARHGAP4 Missense_Mutation p.L81P 0.81 deleterious(0) probably_damaging(0.995) TCGA-AY-6197-01 X 153688565 153688565 G - PLXNA3 Frame_Shift_Del p.A17Pfs*12 0.29 TCGA-AY-6197-01 X 154194731 154194731 T C F8 Missense_Mutation p.Y414C 0.74 deleterious(0) probably_damaging(1) TCGA-AY-6197-01 X 155006060 155006060 G A SPRY3 3'UTR 0.41 TCGA-AY-6197-01 X 17705900 17705900 T C NHS Missense_Mutation p.Y202H 0.17 tolerated(1) possibly_damaging(0.79) TCGA-AY-6197-01 X 18972422 18972422 T C PHKA2 Missense_Mutation p.K63E 0.74 deleterious(0.02) probably_damaging(0.997) TCGA-AY-6197-01 X 19817836 19817836 G A SH3KBP1 Intron 0.39 TCGA-AY-6197-01 X 21875017 21875017 A - YY2 Frame_Shift_Del p.K140Sfs*46 0.25 TCGA-AY-6197-01 X 24086128 24086128 T C EIF2S3 Silent p.S305S 0.10 TCGA-AY-6197-01 X 35989736 35989736 A G CXorf22 Missense_Mutation p.I668M 0.15 tolerated(0.05) benign(0.269) TCGA-AY-6197-01 X 43656480 43656480 G C MAOB Missense_Mutation p.N170K 0.80 tolerated(0.08) possibly_damaging(0.774) TCGA-AY-6197-01 X 47511229 47511229 G - UXT 3'UTR 0.48 TCGA-AY-6197-01 X 48386651 48386651 C T EBP Silent p.L167L 0.48 TCGA-AY-6197-01 X 50377324 50377324 C T SHROOM4 Silent p.R583R 0.77 TCGA-AY-6197-01 X 53310691 53310692 - G IQSEC2 Intron 0.76 TCGA-AY-6197-01 X 63413181 63413181 C T AMER1 5'UTR 0.80 TCGA-AY-6197-01 X 67494577 67494577 T A OPHN1 Intron 0.74 TCGA-AY-6197-01 X 69282523 69282523 G A OTUD6A Missense_Mutation p.R50H 0.78 deleterious(0.05) benign(0.055) TCGA-AY-6197-01 X 70346924 70346924 C G MED12 Missense_Mutation p.R931G 0.76 probably_damaging(0.988) TCGA-AY-6197-01 X 71361109 71361109 T - NHSL2 Intron 0.47 TCGA-AY-6197-01 X 75649354 75649354 T C MAGEE1 Missense_Mutation p.V344A 0.19 deleterious_low_confidence(0.01) benign(0.011) TCGA-AY-6197-01 X 79964960 79964960 T C BRWD3 Silent p.S814S 0.38 TCGA-AY-6197-01 X 82763289 82763289 G T POU3F4 5'UTR 0.88 TCGA-AY-6197-01 X 8536404 8536404 A G KAL1 Missense_Mutation p.V359A 0.08 tolerated(0.06) benign(0.306) TCGA-AY-6197-01 X 89177666 89177666 G T TGIF2LX Missense_Mutation p.K194N 0.81 tolerated(0.09) possibly_damaging(0.559) TCGA-AY-6197-01 Y 21868176 21868176 C T KDM5D Missense_Mutation p.R1442Q 0.76 tolerated(0.14) probably_damaging(0.992) TCGA-AY-6197-01 Y 2843566 2843566 A G ZFY Missense_Mutation p.I267V 0.47 tolerated(0.66) benign(0.008) TCGA-AY-6386-01 10 135184238 135184238 C T ECHS1 Missense_Mutation p.A38T 0.28 tolerated(0.54) benign(0) TCGA-AY-6386-01 10 14909740 14909740 G A HSPA14 Silent p.V404V 0.11 TCGA-AY-6386-01 10 19787503 19787503 G C MALRD1 Missense_Mutation p.D1129H 0.34 deleterious(0) probably_damaging(0.995) TCGA-AY-6386-01 10 62632024 62632024 C T RHOBTB1 Missense_Mutation p.A614T 0.42 tolerated(0.39) benign(0.01) TCGA-AY-6386-01 10 64967899 64967899 G T JMJD1C Missense_Mutation p.T1177K 0.35 tolerated(0.75) benign(0.211) TCGA-AY-6386-01 10 98411292 98411292 C T PIK3AP1 Missense_Mutation p.A277T 0.34 tolerated(0.44) possibly_damaging(0.555) TCGA-AY-6386-01 11 111368768 111368768 G A BTG4 Missense_Mutation p.P89L 0.35 deleterious(0) probably_damaging(1) TCGA-AY-6386-01 11 12246316 12246316 G T MICAL2 Missense_Mutation p.R546L 0.34 deleterious(0) possibly_damaging(0.747) TCGA-AY-6386-01 11 14541871 14541871 C T PSMA1 Intron 0.33 TCGA-AY-6386-01 11 1774710 1774710 C A CTSD 3'UTR 0.31 TCGA-AY-6386-01 11 55135480 55135480 A C OR4A15 Missense_Mutation p.I41L 0.40 deleterious_low_confidence(0) benign(0.051) TCGA-AY-6386-01 11 55655586 55655586 C T TRIM51 Missense_Mutation p.H196Y 0.31 tolerated(0.09) benign(0.221) TCGA-AY-6386-01 11 64601972 64601972 G A CDC42BPG Silent p.A751A 0.34 TCGA-AY-6386-01 11 66034408 66034408 G A KLC2 Missense_Mutation p.R617Q 0.28 tolerated_low_confidence(0.12) unknown(0) TCGA-AY-6386-01 11 77933207 77933207 G A GAB2 Silent p.T534T 0.08 TCGA-AY-6386-01 12 118577336 118577336 C T PEBP1 Missense_Mutation p.S109L 0.06 deleterious(0) benign(0.318) TCGA-AY-6386-01 12 129566435 129566435 G T TMEM132D Missense_Mutation p.L598M 0.28 deleterious(0) probably_damaging(0.973) TCGA-AY-6386-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.35 deleterious(0) benign(0.361) TCGA-AY-6386-01 12 48131375 48131375 C T RAPGEF3 Missense_Mutation p.R916H 0.34 deleterious(0.01) possibly_damaging(0.818) TCGA-AY-6386-01 12 50745886 50745886 T C FAM186A Missense_Mutation p.I1577V 0.13 tolerated(0.3) benign(0.227) TCGA-AY-6386-01 12 52627029 52627029 C T KRT7 5'UTR 0.34 TCGA-AY-6386-01 12 52685196 52685196 G A KRT81 Silent p.C18C 0.45 TCGA-AY-6386-01 13 101710292 101710292 T C NALCN Silent p.S1674S 0.27 TCGA-AY-6386-01 13 21395947 21395947 G A XPO4 Nonsense_Mutation p.R357* 0.41 TCGA-AY-6386-01 13 92345888 92345888 G T GPC5 Missense_Mutation p.C258F 0.38 deleterious(0) probably_damaging(1) TCGA-AY-6386-01 14 61519316 61519317 - A SLC38A6 Intron 0.41 TCGA-AY-6386-01 14 75279460 75279460 C T YLPM1 Missense_Mutation p.P1826L 0.41 probably_damaging(0.998) TCGA-AY-6386-01 14 78325468 78325468 G A ADCK1 Missense_Mutation p.R90Q 0.34 tolerated(0.2) probably_damaging(0.934) TCGA-AY-6386-01 15 24921462 24921462 G A NPAP1 Missense_Mutation p.E150K 0.39 deleterious(0.04) probably_damaging(0.93) TCGA-AY-6386-01 15 25936864 25936864 G A ATP10A Nonsense_Mutation p.Q1055* 0.31 TCGA-AY-6386-01 15 58256269 58256269 T C ALDH1A2 Splice_Site p.X301_splice 0.13 TCGA-AY-6386-01 16 14940449 14940450 - AG NOMO1 Frame_Shift_Ins p.P141Sfs*12 0.11 TCGA-AY-6386-01 16 3707076 3707076 C T DNASE1 Silent p.D171D 0.34 TCGA-AY-6386-01 17 21825443 21825443 C A FAM27L RNA 0.34 TCGA-AY-6386-01 17 56679790 56679790 T C TEX14 Missense_Mutation p.I506V 0.33 deleterious(0) probably_damaging(0.999) TCGA-AY-6386-01 17 57958429 57958429 G A TUBD1 Silent p.N121N 0.31 TCGA-AY-6386-01 17 70117715 70117716 - A SOX9 Frame_Shift_Ins p.E63Gfs*189 0.29 TCGA-AY-6386-01 17 70118847 70118880 CCGCCCCGAGCAGACTTCTGAACGAGAGCGAGAA - SOX9 Splice_Site p.X144_splice 0.16 TCGA-AY-6386-01 17 7256361 7256361 C T KCTD11 Missense_Mutation p.R34W 0.36 deleterious(0) possibly_damaging(0.896) TCGA-AY-6386-01 17 74005494 74005494 G A EVPL Silent p.P1264P 0.33 TCGA-AY-6386-01 17 7979504 7979504 A G ALOX12B Silent p.N507N 0.31 TCGA-AY-6386-01 18 21494392 21494392 G A LAMA3 Missense_Mutation p.G2450S 0.33 probably_damaging(1) TCGA-AY-6386-01 18 48575152 48575152 C T SMAD4 Nonsense_Mutation p.Q116* 0.46 TCGA-AY-6386-01 19 10087908 10087908 G A COL5A3 Silent p.D1095D 0.46 TCGA-AY-6386-01 19 17720822 17720822 C T UNC13A Missense_Mutation p.D1580N 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-AY-6386-01 19 30498385 30498385 C T URI1 Nonsense_Mutation p.R176* 0.30 TCGA-AY-6386-01 19 30934951 30934951 C T ZNF536 Missense_Mutation p.P161L 0.26 deleterious(0) probably_damaging(1) TCGA-AY-6386-01 19 36212050 36212050 C T KMT2B Missense_Mutation p.R601W 0.31 probably_damaging(0.963) TCGA-AY-6386-01 19 38102981 38102981 G A ZNF540 Missense_Mutation p.G267D 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AY-6386-01 19 40520471 40520471 C T ZNF546 Missense_Mutation p.R432C 0.49 deleterious(0) benign(0.002) TCGA-AY-6386-01 19 49261363 49261363 C T FGF21 Silent p.P172P 0.35 TCGA-AY-6386-01 19 54445331 54445331 C T CACNG7 Silent p.Y204Y 0.26 TCGA-AY-6386-01 19 6820770 6820770 C T VAV1 Missense_Mutation p.L88F 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-AY-6386-01 19 8987224 8987224 C T MUC16 Missense_Mutation p.V13955I 0.29 possibly_damaging(0.808) TCGA-AY-6386-01 19 9003588 9003588 G A MUC16 Missense_Mutation p.T13351M 0.26 probably_damaging(0.992) TCGA-AY-6386-01 1 149785212 149785212 G T HIST2H3D Missense_Mutation p.R9S 0.35 deleterious_low_confidence(0.03) benign(0) TCGA-AY-6386-01 1 151542174 151542183 GACGGTGCAG - TUFT1 Frame_Shift_Del p.V176Cfs*59 0.25 TCGA-AY-6386-01 1 155265485 155265485 G A PKLR Nonsense_Mutation p.R116* 0.30 TCGA-AY-6386-01 1 167825600 167825612 CTCCATAAATCTC - ADCY10 Frame_Shift_Del p.W654* 0.25 TCGA-AY-6386-01 1 16946311 16946311 C A RP5-1182A14.5 3'Flank 0.08 TCGA-AY-6386-01 1 16946321 16946321 C T RP5-1182A14.5 3'Flank 0.10 TCGA-AY-6386-01 1 182442961 182442961 T G RGSL1 Missense_Mutation p.C239G 0.30 tolerated(0.3) benign(0.001) TCGA-AY-6386-01 1 197150182 197150183 - TA ZBTB41 Frame_Shift_Ins p.E538* 0.27 TCGA-AY-6386-01 1 34037134 34037134 C T CSMD2 Missense_Mutation p.R2654Q 0.26 tolerated(1) benign(0) TCGA-AY-6386-01 1 45960738 45960738 C A CCDC163P 3'Flank 0.34 TCGA-AY-6386-01 1 99730222 99730222 G A LPPR4 Missense_Mutation p.V73I 0.28 deleterious(0.02) benign(0.104) TCGA-AY-6386-01 20 13846087 13846087 C A SEL1L2 Intron 0.35 TCGA-AY-6386-01 20 279181 279181 C A ZCCHC3 Missense_Mutation p.F318L 0.36 tolerated(0.24) probably_damaging(0.935) TCGA-AY-6386-01 20 3240166 3240166 G A C20orf194 Silent p.S1005S 0.38 TCGA-AY-6386-01 20 34505510 34505510 G A PHF20 Missense_Mutation p.G644R 0.29 tolerated(0.1) benign(0.385) TCGA-AY-6386-01 20 41408891 41408891 C T PTPRT Missense_Mutation p.V179M 0.31 deleterious(0.03) possibly_damaging(0.727) TCGA-AY-6386-01 20 42143131 42143131 G A L3MBTL1 Intron 0.35 TCGA-AY-6386-01 21 19642312 19642312 C T TMPRSS15 Missense_Mutation p.E1012K 0.31 tolerated(0.08) benign(0.009) TCGA-AY-6386-01 21 33331182 33331182 C T HUNK Silent p.T258T 0.07 TCGA-AY-6386-01 21 35468779 35468779 A G SLC5A3 Missense_Mutation p.I428V 0.30 tolerated(1) benign(0.058) TCGA-AY-6386-01 21 40847125 40847125 C T SH3BGR Missense_Mutation p.P162L 0.25 deleterious(0.01) possibly_damaging(0.689) TCGA-AY-6386-01 22 17083022 17083022 C T TPTEP1 RNA 0.33 TCGA-AY-6386-01 22 29629415 29629415 C T EMID1 Missense_Mutation p.P291S 0.37 tolerated(0.19) benign(0.043) TCGA-AY-6386-01 22 38934387 38934387 G A DMC1 Nonsense_Mutation p.R230* 0.39 TCGA-AY-6386-01 22 39822773 39822773 C T TAB1 Silent p.A329A 0.39 TCGA-AY-6386-01 2 100182038 100182038 C T AFF3 Silent p.S1035S 0.27 TCGA-AY-6386-01 2 127451522 127451522 A T GYPC Silent p.A63A 0.34 TCGA-AY-6386-01 2 166535587 166535587 C T CSRNP3 Missense_Mutation p.T361M 0.28 deleterious(0.03) possibly_damaging(0.897) TCGA-AY-6386-01 2 172822387 172822387 G C HAT1 Missense_Mutation p.S190T 0.29 deleterious(0.04) possibly_damaging(0.533) TCGA-AY-6386-01 2 179424970 179424970 G T TTN Missense_Mutation p.A28630D 0.03 TCGA-AY-6386-01 2 200193581 200193581 T C SATB2 Missense_Mutation p.Q409R 0.32 tolerated(0.1) probably_damaging(0.998) TCGA-AY-6386-01 2 238287473 238287473 C T COL6A3 Missense_Mutation p.R768H 0.29 probably_damaging(0.998) TCGA-AY-6386-01 2 54887106 54887106 C T SPTBN1 Silent p.N2130N 0.31 TCGA-AY-6386-01 2 74906971 74906971 C T SEMA4F Nonsense_Mutation p.R650* 0.33 TCGA-AY-6386-01 3 112648347 112648347 A G CD200R1 Silent p.T70T 0.32 TCGA-AY-6386-01 3 142259820 142259820 A G ATR Silent p.S1169S 0.08 TCGA-AY-6386-01 3 15529768 15529768 G A COLQ Missense_Mutation p.S89L 0.35 tolerated(0.19) benign(0.385) TCGA-AY-6386-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.30 deleterious(0.04) probably_damaging(0.96) TCGA-AY-6386-01 3 21462818 21462818 G A ZNF385D Missense_Mutation p.T359I 0.30 tolerated(0.05) benign(0.021) TCGA-AY-6386-01 3 51457371 51457371 C T VPRBP Missense_Mutation p.R589H 0.31 tolerated(0.15) benign(0.032) TCGA-AY-6386-01 3 9517605 9517605 C T SETD5 Missense_Mutation p.R1387W 0.31 deleterious(0) probably_damaging(0.999) TCGA-AY-6386-01 4 119958314 119958314 C T SYNPO2 Intron 0.30 TCGA-AY-6386-01 4 126411686 126411686 C T FAT4 Missense_Mutation p.T4570I 0.31 benign(0.343) TCGA-AY-6386-01 4 129960422 129960422 A G SCLT1 Intron 0.15 TCGA-AY-6386-01 4 134072498 134072498 G A PCDH10 Silent p.V401V 0.28 TCGA-AY-6386-01 4 153251907 153251907 G A FBXW7 Nonsense_Mutation p.R367* 0.04 TCGA-AY-6386-01 4 158141974 158141974 G A GRIA2 5'UTR 0.20 TCGA-AY-6386-01 4 57301626 57301626 C T PPAT Silent p.L6L 0.35 TCGA-AY-6386-01 4 68725340 68725340 A G TMPRSS11D Missense_Mutation p.I22T 0.30 deleterious(0.04) benign(0.007) TCGA-AY-6386-01 4 79254475 79254476 CA - FRAS1 Frame_Shift_Del p.T730Rfs*27 0.28 TCGA-AY-6386-01 4 83827782 83827782 T C THAP9 Splice_Site p.X194_splice 0.29 TCGA-AY-6386-01 4 89304465 89304465 G A HERC6 Missense_Mutation p.A98T 0.31 tolerated(0.27) possibly_damaging(0.527) TCGA-AY-6386-01 5 112173582 112173582 T G APC Nonsense_Mutation p.L764* 0.32 TCGA-AY-6386-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.21 TCGA-AY-6386-01 5 132097522 132097522 C A SEPT8 Missense_Mutation p.A255S 0.31 tolerated(0.06) possibly_damaging(0.903) TCGA-AY-6386-01 5 135207198 135207198 C T SLC25A48 Intron 0.41 TCGA-AY-6386-01 5 140182225 140182225 C T PCDHA3 Silent p.D481D 0.40 TCGA-AY-6386-01 5 151180324 151180324 A G G3BP1 Missense_Mutation p.Y363C 0.32 deleterious(0) possibly_damaging(0.701) TCGA-AY-6386-01 5 175110642 175110642 G A HRH2 Missense_Mutation p.A136T 0.36 tolerated(0.35) benign(0.081) TCGA-AY-6386-01 5 33937520 33937520 C T RXFP3 Silent p.A225A 0.40 TCGA-AY-6386-01 5 43246021 43246021 C T NIM1K Silent p.F48F 0.39 TCGA-AY-6386-01 5 56558491 56558491 C T GPBP1 Missense_Mutation p.P452L 0.12 deleterious(0.01) probably_damaging(1) TCGA-AY-6386-01 5 67576438 67576438 G A PIK3R1 Silent p.T239T 0.33 TCGA-AY-6386-01 5 98129408 98129408 T A RGMB Nonsense_Mutation p.L463* 0.35 TCGA-AY-6386-01 6 100841571 100841571 C T SIM1 Silent p.S454S 0.39 TCGA-AY-6386-01 6 160328503 160328503 C T MAS1 Silent p.I172I 0.31 TCGA-AY-6386-01 6 73904618 73904618 G T KCNQ5 Silent p.L779L 0.37 TCGA-AY-6386-01 7 100491611 100491611 C T ACHE Silent p.P81P 0.24 TCGA-AY-6386-01 7 107748075 107748075 C T LAMB4 Splice_Site p.X197_splice 0.21 TCGA-AY-6386-01 7 128524104 128524105 - G KCP RNA 0.20 TCGA-AY-6386-01 7 135304552 135304552 C T NUP205 Nonsense_Mutation p.R1416* 0.52 TCGA-AY-6386-01 7 150733235 150733235 G A ABCB8 Silent p.G363G 0.23 TCGA-AY-6386-01 7 1586726 1586726 G A TMEM184A Silent p.S368S 0.29 TCGA-AY-6386-01 7 44721375 44721375 C T OGDH Silent p.Y421Y 0.47 TCGA-AY-6386-01 7 48318759 48318759 G A ABCA13 Silent p.A2656A 0.25 TCGA-AY-6386-01 7 6548927 6548927 C T GRID2IP Missense_Mutation p.G597S 0.54 tolerated(0.87) benign(0) TCGA-AY-6386-01 8 77766535 77766535 G A ZFHX4 Missense_Mutation p.G2460R 0.32 benign(0.396) TCGA-AY-6386-01 8 89053597 89053597 C A MMP16 3'UTR 0.34 TCGA-AY-6386-01 9 116931642 116931642 C T COL27A1 Missense_Mutation p.R603W 0.27 unknown(0) TCGA-AY-6386-01 9 139343068 139343068 C G SEC16A Intron 0.09 TCGA-AY-6386-01 9 139343242 139343242 A G SEC16A Intron 0.10 TCGA-AY-6386-01 9 139343279 139343279 A G SEC16A Intron 0.17 TCGA-AY-6386-01 9 139747936 139747936 G A MAMDC4 Intron 0.32 TCGA-AY-6386-01 9 140120128 140120128 C T C9orf169 Missense_Mutation p.R19W 0.08 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-AY-6386-01 9 16419326 16419326 C T BNC2 Silent p.G987G 0.41 TCGA-AY-6386-01 9 70177112 70177112 G T FOXD4L5 Missense_Mutation p.A291E 0.13 tolerated_low_confidence(0.28) benign(0.002) TCGA-AY-6386-01 9 94493226 94493226 G A ROR2 Silent p.N383N 0.35 TCGA-AY-6386-01 X 104464194 104464194 C T TEX13A Missense_Mutation p.V228M 0.30 deleterious(0.05) benign(0.041) TCGA-AY-6386-01 X 114468453 114468453 G A LRCH2 Missense_Mutation p.P51L 0.30 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-AY-6386-01 X 129045054 129045054 G T UTP14A Silent p.V103V 0.31 TCGA-AY-6386-01 X 142596992 142596992 C G SPANXN3 Splice_Site p.X27_splice 0.04 TCGA-AY-6386-01 X 150832662 150832662 G A PASD1 Missense_Mutation p.E305K 0.36 deleterious(0.03) possibly_damaging(0.733) TCGA-AY-6386-01 X 153175289 153175289 G A ARHGAP4 Missense_Mutation p.R814W 0.31 deleterious(0.03) benign(0.052) TCGA-AY-6386-01 X 153694764 153694764 G A PLXNA3 Missense_Mutation p.G949R 0.31 deleterious(0) possibly_damaging(0.882) TCGA-AY-6386-01 X 23410773 23410773 G T PTCHD1 Missense_Mutation p.A380S 0.31 tolerated(0.07) possibly_damaging(0.782) TCGA-AY-6386-01 X 41587419 41587419 A T GPR82 3'UTR 0.38 TCGA-AY-6386-01 X 46521553 46521553 G A SLC9A7 Silent p.H313H 0.31 TCGA-AY-6386-01 X 49958206 49958206 G T AKAP4 Nonsense_Mutation p.C386* 0.37 TCGA-AY-6386-01 X 63411678 63411678 G A AMER1 Nonsense_Mutation p.R497* 0.32 TCGA-AY-6386-01 X 70329170 70329170 C T IL2RG Missense_Mutation p.R222H 0.32 tolerated(0.36) possibly_damaging(0.624) TCGA-AY-6386-01 X 89177439 89177439 G A TGIF2LX Missense_Mutation p.D119N 0.26 tolerated(0.09) benign(0.003) TCGA-AY-6386-01 X 90691094 90691094 G A PABPC5 Missense_Mutation p.R173H 0.06 deleterious(0.02) possibly_damaging(0.714) TCGA-AY-6386-01 X 91132172 91132172 C T PCDH11X Silent p.I311I 0.30 TCGA-AY-A54L-01 10 126655289 126655289 C T ZRANB1 Missense_Mutation p.T314I 0.11 deleterious(0) benign(0.368) TCGA-AY-A54L-01 10 46235668 46235668 C T FAM21C Missense_Mutation p.R168W 0.25 deleterious(0) probably_damaging(1) TCGA-AY-A54L-01 10 50954917 50954917 G C OGDHL Missense_Mutation p.S392C 0.13 deleterious(0.04) benign(0.288) TCGA-AY-A54L-01 10 51853143 51853143 G A FAM21A Silent p.E373E 0.19 TCGA-AY-A54L-01 10 75555351 75555351 G A ZSWIM8 Missense_Mutation p.R988H 0.32 deleterious(0) probably_damaging(0.997) TCGA-AY-A54L-01 10 94243064 94243064 G C IDE Missense_Mutation p.Q563E 0.21 deleterious(0.03) probably_damaging(0.978) TCGA-AY-A54L-01 11 111779546 111779546 C T CRYAB Missense_Mutation p.R157H 0.19 deleterious(0.02) probably_damaging(0.977) TCGA-AY-A54L-01 11 119103309 119103309 G A CBL Missense_Mutation p.R116K 0.58 tolerated(0.32) benign(0.104) TCGA-AY-A54L-01 11 1271511 1271511 C T MUC5B Silent p.A4467A 0.62 TCGA-AY-A54L-01 11 55339898 55339898 G A OR4C16 Missense_Mutation p.V99I 0.13 tolerated(0.27) benign(0.053) TCGA-AY-A54L-01 11 60687402 60687402 G A TMEM109 Silent p.E79E 0.10 TCGA-AY-A54L-01 11 7846824 7846824 C A OR5P3 Missense_Mutation p.K232N 0.19 deleterious(0.01) benign(0.063) TCGA-AY-A54L-01 12 120119306 120119306 T C PRKAB1 3'UTR 0.18 TCGA-AY-A54L-01 12 22670982 22670982 G A C2CD5 Missense_Mutation p.S297F 0.20 tolerated(0.07) benign(0.002) TCGA-AY-A54L-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.37 deleterious(0.04) probably_damaging(0.993) TCGA-AY-A54L-01 12 52980754 52980754 C T KRT72 Missense_Mutation p.E441K 0.24 deleterious(0) benign(0.443) TCGA-AY-A54L-01 12 54676588 54676588 C T HNRNPA1 Silent p.G227G 0.35 TCGA-AY-A54L-01 12 54798980 54798980 G - ITGA5 Frame_Shift_Del p.L399Wfs*26 0.26 TCGA-AY-A54L-01 12 67692799 67692799 T C CAND1 Silent p.D308D 0.21 TCGA-AY-A54L-01 12 8075621 8075621 C G SLC2A3 Splice_Site p.X357_splice 0.47 TCGA-AY-A54L-01 13 102105072 102105072 G A ITGBL1 5'UTR 0.39 TCGA-AY-A54L-01 13 111156531 111156531 G A COL4A2 Missense_Mutation p.G1441E 0.31 unknown(0) TCGA-AY-A54L-01 13 113803451 113803451 G A F10 Missense_Mutation p.G363S 0.42 deleterious(0) probably_damaging(1) TCGA-AY-A54L-01 13 23908035 23908035 G T SACS Missense_Mutation p.A3327D 0.10 possibly_damaging(0.447) TCGA-AY-A54L-01 13 25435525 25435525 T C RNF17 Silent p.P1298P 0.06 TCGA-AY-A54L-01 13 39263583 39263583 C T FREM2 Missense_Mutation p.P701L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-AY-A54L-01 13 61987300 61987300 C G PCDH20 Missense_Mutation p.S311T 0.23 tolerated(1) benign(0.002) TCGA-AY-A54L-01 14 101349174 101349174 G A RTL1 Missense_Mutation p.P651L 0.07 deleterious(0) probably_damaging(0.999) TCGA-AY-A54L-01 14 104220437 104220437 C T PPP1R13B Missense_Mutation p.D201N 0.52 deleterious(0) probably_damaging(0.983) TCGA-AY-A54L-01 14 105410425 105410426 TC A AHNAK2 Frame_Shift_Del p.D3788Sfs*9 0.17 TCGA-AY-A54L-01 14 105414069 105414069 A G AHNAK2 Silent p.S2573S 0.21 TCGA-AY-A54L-01 14 106170851 106170851 G A IGHA1 3'Flank 0.33 TCGA-AY-A54L-01 14 106494446 106494446 C A IGHV2-5 Splice_Site p.X16_splice 0.14 TCGA-AY-A54L-01 14 23549616 23549616 C T ACIN1 Missense_Mutation p.E368K 0.23 benign(0.004) TCGA-AY-A54L-01 14 71227786 71227786 T C MAP3K9 Missense_Mutation p.T312A 0.38 deleterious(0) probably_damaging(0.986) TCGA-AY-A54L-01 14 76905924 76905924 C T ESRRB Silent p.Y76Y 0.31 TCGA-AY-A54L-01 14 88729618 88729618 G A KCNK10 Silent p.I110I 0.29 TCGA-AY-A54L-01 14 91701204 91701204 G A GPR68 Missense_Mutation p.T64M 0.30 deleterious(0) probably_damaging(0.995) TCGA-AY-A54L-01 14 96993782 96993782 C T PAPOLA Missense_Mutation p.A116V 0.29 deleterious(0.04) benign(0.184) TCGA-AY-A54L-01 15 79282605 79282605 C A RASGRF1 Nonsense_Mutation p.G1064* 0.20 TCGA-AY-A54L-01 15 83805575 83805575 G A TM6SF1 3'UTR 0.23 TCGA-AY-A54L-01 16 1687901 1687902 - G CRAMP1L Frame_Shift_Ins p.C260Lfs*4 0.29 TCGA-AY-A54L-01 16 20435323 20435323 G A ACSM5 Missense_Mutation p.A285T 0.38 tolerated(0.09) benign(0.019) TCGA-AY-A54L-01 16 34739691 34739691 G A RP11-80F22.15 RNA 0.11 TCGA-AY-A54L-01 16 3808917 3808917 G A CREBBP Nonsense_Mutation p.R1103* 0.30 TCGA-AY-A54L-01 16 418331 418333 CTC - MRPL28 In_Frame_Del p.E220del 0.39 TCGA-AY-A54L-01 16 51171226 51171226 C T SALL1 Missense_Mutation p.G1258S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-AY-A54L-01 16 71713409 71713409 G A PHLPP2 Missense_Mutation p.S307F 0.33 deleterious(0) possibly_damaging(0.542) TCGA-AY-A54L-01 16 90001840 90001840 C T TUBB3 Silent p.D327D 0.07 TCGA-AY-A54L-01 16 9024240 9024240 C G USP7 Missense_Mutation p.D32H 0.08 deleterious(0.04) benign(0.176) TCGA-AY-A54L-01 17 12920211 12920211 C G ELAC2 Missense_Mutation p.R112P 0.22 deleterious(0) probably_damaging(1) TCGA-AY-A54L-01 17 37933967 37933967 C T IKZF3 Missense_Mutation p.V255I 0.09 tolerated(0.08) benign(0.165) TCGA-AY-A54L-01 17 46052947 46052947 G T CDK5RAP3 Missense_Mutation p.G194V 0.09 tolerated(0.13) benign(0.304) TCGA-AY-A54L-01 17 70120181 70120182 - CG SOX9 Frame_Shift_Ins p.H396Rfs*8 0.12 TCGA-AY-A54L-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.38 TCGA-AY-A54L-01 17 79256052 79256052 C T SLC38A10 Missense_Mutation p.M146I 0.04 deleterious(0) benign(0.089) TCGA-AY-A54L-01 17 79427401 79427401 C - RP11-1055B8.7 Frame_Shift_Del p.P2003Lfs*15 0.45 TCGA-AY-A54L-01 18 20833783 20833783 C T CABLES1 Silent p.L548L 0.12 TCGA-AY-A54L-01 18 32888277 32888277 G A ZNF271 RNA 0.43 TCGA-AY-A54L-01 18 43568672 43568672 G T PSTPIP2 3'UTR 0.21 TCGA-AY-A54L-01 18 59925295 59925295 A G KIAA1468 Missense_Mutation p.I671V 0.26 tolerated(0.14) benign(0.355) TCGA-AY-A54L-01 18 61569671 61569671 C T SERPINB2 Missense_Mutation p.R238C 0.29 deleterious(0) possibly_damaging(0.713) TCGA-AY-A54L-01 19 1010561 1010561 C T TMEM259 Missense_Mutation p.A551T 0.64 deleterious_low_confidence(0.01) possibly_damaging(0.591) TCGA-AY-A54L-01 19 11143985 11143985 G A SMARCA4 Missense_Mutation p.R1189Q 0.04 probably_damaging(0.999) TCGA-AY-A54L-01 19 31769766 31769766 A G TSHZ3 Silent p.P311P 0.06 TCGA-AY-A54L-01 19 37619676 37619676 G T ZNF420 Missense_Mutation p.A595S 0.12 tolerated(0.06) possibly_damaging(0.694) TCGA-AY-A54L-01 19 37967308 37967308 G T ZNF570 Missense_Mutation p.K76N 0.07 tolerated(0.05) benign(0.001) TCGA-AY-A54L-01 19 52852460 52852460 C A ZNF610 Missense_Mutation p.A12E 0.08 tolerated(1) benign(0.001) TCGA-AY-A54L-01 19 54203321 54203321 G T MIR518F RNA 0.53 TCGA-AY-A54L-01 19 54598453 54598453 G C OSCAR 3'UTR 0.20 TCGA-AY-A54L-01 19 57910517 57910517 A T ZNF548 Nonsense_Mutation p.K300* 0.16 TCGA-AY-A54L-01 19 6535051 6535051 G A TNFSF9 Missense_Mutation p.G247R 0.50 deleterious(0.04) benign(0.246) TCGA-AY-A54L-01 19 8619389 8619389 C T MYO1F Missense_Mutation p.D100N 0.29 deleterious(0.05) possibly_damaging(0.826) TCGA-AY-A54L-01 1 100174408 100174408 G A FRRS1 3'UTR 0.47 TCGA-AY-A54L-01 1 115215808 115215808 C T AMPD1 Missense_Mutation p.R757H 0.41 deleterious(0) probably_damaging(0.999) TCGA-AY-A54L-01 1 118486062 118486062 G T WDR3 Missense_Mutation p.V381F 0.04 tolerated(0.07) benign(0.004) TCGA-AY-A54L-01 1 156640470 156640470 C T NES Silent p.E1170E 0.11 TCGA-AY-A54L-01 1 159842312 159842312 C A CCDC19 Missense_Mutation p.R540L 0.22 deleterious(0) probably_damaging(0.999) TCGA-AY-A54L-01 1 170689011 170689011 G A PRRX1 Missense_Mutation p.R129H 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-AY-A54L-01 1 176709226 176709226 C T PAPPA2 Missense_Mutation p.R1349W 0.44 deleterious(0.02) benign(0.443) TCGA-AY-A54L-01 1 179520261 179520261 C A NPHS2 3'UTR 0.07 TCGA-AY-A54L-01 1 181708382 181708382 G T CACNA1E Missense_Mutation p.A1238S 0.06 deleterious(0) probably_damaging(0.92) TCGA-AY-A54L-01 1 183511389 183511389 A C SMG7 Missense_Mutation p.N532H 0.04 tolerated_low_confidence(0.06) benign(0.332) TCGA-AY-A54L-01 1 232172647 232172647 G A DISC1 3'UTR 0.11 TCGA-AY-A54L-01 1 24484171 24484171 C T IFNLR1 Missense_Mutation p.V338I 0.24 tolerated(0.59) benign(0.016) TCGA-AY-A54L-01 1 247902365 247902365 G T OR14K1 Missense_Mutation p.R150I 0.05 deleterious(0) benign(0.007) TCGA-AY-A54L-01 1 248263794 248263794 T C OR2L13 3'UTR 0.38 TCGA-AY-A54L-01 1 29391629 29391629 C T EPB41 Nonsense_Mutation p.R715* 0.19 TCGA-AY-A54L-01 1 29631913 29631913 C T PTPRU Silent p.A941A 0.15 TCGA-AY-A54L-01 1 45474102 45474102 C T HECTD3 Intron 0.05 TCGA-AY-A54L-01 1 53544324 53544324 G A PODN Missense_Mutation p.R429H 0.21 tolerated(0.08) probably_damaging(1) TCGA-AY-A54L-01 1 55521806 55521806 G A PCSK9 Missense_Mutation p.A314T 0.31 deleterious(0) probably_damaging(0.992) TCGA-AY-A54L-01 1 6155592 6155592 G A KCNAB2 Missense_Mutation p.V286M 0.24 tolerated(0.06) benign(0.229) TCGA-AY-A54L-01 1 76384576 76384576 T A ASB17 3'UTR 0.26 TCGA-AY-A54L-01 1 7724160 7724160 G A CAMTA1 Missense_Mutation p.G518E 0.46 deleterious_low_confidence(0.01) benign(0) TCGA-AY-A54L-01 1 85592281 85592281 G A WDR63 Missense_Mutation p.G734S 0.11 deleterious(0.02) possibly_damaging(0.823) TCGA-AY-A54L-01 1 94058004 94058004 G T BCAR3 Intron 0.29 TCGA-AY-A54L-01 20 1145118 1145118 C T PSMF1 Silent p.P254P 0.25 TCGA-AY-A54L-01 20 21686924 21686924 G A PAX1 Intron 0.19 TCGA-AY-A54L-01 20 32212695 32212695 G A CBFA2T2 Missense_Mutation p.G282D 0.59 deleterious(0.03) possibly_damaging(0.771) TCGA-AY-A54L-01 20 37357015 37357015 C T SLC32A1 Silent p.C437C 0.20 TCGA-AY-A54L-01 20 43355896 43355896 C A WISP2 Missense_Mutation p.S234Y 0.24 deleterious(0.02) benign(0.378) TCGA-AY-A54L-01 20 57766984 57766984 C T ZNF831 Nonsense_Mutation p.Q304* 0.12 TCGA-AY-A54L-01 20 60709437 60709438 - T LSM14B 3'UTR 0.09 TCGA-AY-A54L-01 20 62705326 62705326 G A RGS19 Silent p.D178D 0.17 TCGA-AY-A54L-01 21 31964921 31964921 G A KRTAP6-3 Missense_Mutation p.G46S 0.10 unknown(0) TCGA-AY-A54L-01 22 30857393 30857393 G A SEC14L3 Missense_Mutation p.R329W 0.44 tolerated(0.08) benign(0) TCGA-AY-A54L-01 22 43870813 43870813 C T MPPED1 Missense_Mutation p.R202W 0.14 tolerated(0.18) probably_damaging(0.971) TCGA-AY-A54L-01 2 128410112 128410112 C T GPR17 3'UTR 0.46 TCGA-AY-A54L-01 2 155555337 155555337 C T KCNJ3 Missense_Mutation p.T17I 0.18 deleterious(0.01) possibly_damaging(0.756) TCGA-AY-A54L-01 2 167133728 167133728 A G SCN9A Missense_Mutation p.F869S 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-AY-A54L-01 2 18758134 18758134 G T NT5C1B Missense_Mutation p.T410N 0.15 deleterious(0) probably_damaging(0.999) TCGA-AY-A54L-01 2 20508344 20508344 G A PUM2 Missense_Mutation p.R174C 0.50 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-AY-A54L-01 2 223168710 223168710 C T CCDC140 Missense_Mutation p.A30V 0.19 tolerated_low_confidence(0.1) possibly_damaging(0.695) TCGA-AY-A54L-01 2 37402353 37402353 A G SULT6B1 Silent p.Y144Y 0.20 TCGA-AY-A54L-01 2 3743398 3743398 C A ALLC Silent p.I201I 0.27 TCGA-AY-A54L-01 2 70315174 70315174 T C PCBP1 Missense_Mutation p.L100P 0.40 deleterious(0.03) benign(0.366) TCGA-AY-A54L-01 2 99154396 99154396 C T INPP4A Missense_Mutation p.R180W 0.26 deleterious(0) possibly_damaging(0.814) TCGA-AY-A54L-01 3 122632821 122632821 C T SEMA5B Silent p.S726S 0.13 TCGA-AY-A54L-01 3 130292901 130292901 G T COL6A6 Missense_Mutation p.V1027F 0.10 deleterious(0) probably_damaging(0.943) TCGA-AY-A54L-01 3 137783476 137783476 C T DZIP1L Silent p.K712K 0.30 TCGA-AY-A54L-01 3 138763102 138763102 C T PRR23C Missense_Mutation p.G121S 0.12 tolerated(0.23) possibly_damaging(0.736) TCGA-AY-A54L-01 3 148586818 148586818 G T CPA3 Missense_Mutation p.M87I 0.15 tolerated(1) benign(0.005) TCGA-AY-A54L-01 3 3887234 3887234 C T LRRN1 Silent p.V303V 0.53 TCGA-AY-A54L-01 3 51400028 51400028 G A DOCK3 Missense_Mutation p.S1739N 0.07 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-AY-A54L-01 3 93813931 93813931 T C NSUN3 Missense_Mutation p.S226P 0.16 tolerated(0.28) benign(0.006) TCGA-AY-A54L-01 4 106155821 106155821 C T TET2 Missense_Mutation p.A241V 0.36 tolerated(0.07) possibly_damaging(0.545) TCGA-AY-A54L-01 4 109841751 109841751 C A COL25A1 Missense_Mutation p.G240W 0.10 deleterious(0) unknown(0) TCGA-AY-A54L-01 4 123813653 123813653 G A FGF2 3'UTR 0.60 TCGA-AY-A54L-01 4 153244199 153244199 G A FBXW7 Missense_Mutation p.T653M 0.21 deleterious(0) probably_damaging(0.966) TCGA-AY-A54L-01 4 153303444 153303444 G A FBXW7 Intron 0.14 TCGA-AY-A54L-01 4 47556771 47556771 T A ATP10D Missense_Mutation p.L555H 0.21 deleterious(0) probably_damaging(1) TCGA-AY-A54L-01 4 57204584 57204584 C A AASDH Missense_Mutation p.G1094V 0.11 tolerated(0.14) benign(0.055) TCGA-AY-A54L-01 4 77662950 77662950 G A SHROOM3 Silent p.E1208E 0.20 TCGA-AY-A54L-01 4 7780298 7780298 A T AFAP1 Intron 0.40 TCGA-AY-A54L-01 5 112162945 112162945 G A APC Splice_Site p.X516_splice 0.24 TCGA-AY-A54L-01 5 112175580 112175580 C - APC Frame_Shift_Del p.M1431Cfs*42 0.30 TCGA-AY-A54L-01 5 113831890 113831890 G A KCNN2 3'UTR 0.26 TCGA-AY-A54L-01 5 1222094 1222094 C T SLC6A19 3'UTR 0.47 TCGA-AY-A54L-01 5 13871845 13871845 T A DNAH5 Missense_Mutation p.K1142N 0.09 benign(0.403) TCGA-AY-A54L-01 5 140720213 140720213 G A PCDHGA2 Missense_Mutation p.A559T 0.38 tolerated_low_confidence(0.49) benign(0.005) TCGA-AY-A54L-01 5 140869472 140869472 G A PCDHGC5 Missense_Mutation p.R222H 0.52 deleterious(0.01) benign(0.015) TCGA-AY-A54L-01 5 178506859 178506859 G T ZNF354C Missense_Mutation p.A476S 0.07 deleterious(0.04) benign(0.136) TCGA-AY-A54L-01 5 31323238 31323238 C T CDH6 Silent p.Y732Y 0.06 TCGA-AY-A54L-01 5 36265602 36265603 - A RANBP3L Frame_Shift_Ins p.M122Yfs*9 0.11 TCGA-AY-A54L-01 5 38481687 38481687 G A LIFR 3'UTR 0.42 TCGA-AY-A54L-01 5 45645595 45645595 C A HCN1 Missense_Mutation p.A181S 0.28 deleterious(0.02) benign(0.147) TCGA-AY-A54L-01 5 56777425 56777425 G T ACTBL2 Silent p.I370I 0.16 TCGA-AY-A54L-01 5 71492968 71492968 T G MAP1B Silent p.S1262S 0.08 TCGA-AY-A54L-01 5 71530002 71530002 T C MRPS27 Missense_Mutation p.D140G 0.36 deleterious(0) probably_damaging(0.998) TCGA-AY-A54L-01 5 7520913 7520913 C T ADCY2 Silent p.D157D 0.43 TCGA-AY-A54L-01 6 123637629 123637629 T G TRDN Missense_Mutation p.K495Q 0.51 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-AY-A54L-01 6 152532647 152532647 T C SYNE1 Missense_Mutation p.Q7524R 0.10 possibly_damaging(0.868) TCGA-AY-A54L-01 6 31431969 31431969 C T HCP5 RNA 0.14 TCGA-AY-A54L-01 6 42227349 42227349 G A TRERF1 Missense_Mutation p.P666L 0.53 deleterious(0.02) possibly_damaging(0.726) TCGA-AY-A54L-01 6 489001 489001 G A EXOC2 Missense_Mutation p.L887F 0.24 tolerated(0.11) probably_damaging(0.969) TCGA-AY-A54L-01 6 65098701 65098701 G A EYS Missense_Mutation p.T1987I 0.17 deleterious(0) benign(0.154) TCGA-AY-A54L-01 6 74207471 74207471 C A MTO1 Nonsense_Mutation p.S630* 0.17 TCGA-AY-A54L-01 7 100683778 100683778 T G MUC17 Silent p.S3027S 0.10 TCGA-AY-A54L-01 7 101266281 101266281 C T MYL10 Silent p.A115A 0.09 TCGA-AY-A54L-01 7 115594647 115594647 G T TFEC Missense_Mutation p.H144Q 0.19 deleterious(0) probably_damaging(1) TCGA-AY-A54L-01 7 116403238 116403238 C A MET Silent p.L851L 0.09 TCGA-AY-A54L-01 7 123268969 123268969 T A ASB15 Missense_Mutation p.S307R 0.07 deleterious(0) possibly_damaging(0.807) TCGA-AY-A54L-01 7 12412734 12412734 C A VWDE Nonsense_Mutation p.G486* 0.04 TCGA-AY-A54L-01 7 129093145 129093145 G T STRIP2 Missense_Mutation p.G163W 0.13 deleterious(0) probably_damaging(0.999) TCGA-AY-A54L-01 7 134874111 134874111 C T WDR91 Missense_Mutation p.V585I 0.11 tolerated(0.8) benign(0.009) TCGA-AY-A54L-01 7 143057292 143057292 G A FAM131B Intron 0.17 TCGA-AY-A54L-01 7 37955825 37955825 G A SFRP4 Silent p.R105R 0.05 TCGA-AY-A54L-01 7 38299660 38299660 A G TRGC1 3'UTR 0.10 TCGA-AY-A54L-01 7 66515029 66515029 C T TYW1 Missense_Mutation p.L360F 0.16 deleterious(0.03) probably_damaging(0.973) TCGA-AY-A54L-01 7 73152735 73152735 A C ABHD11 Missense_Mutation p.F71V 0.15 tolerated(0.13) benign(0.017) TCGA-AY-A54L-01 7 73183999 73183999 G A CLDN3 Silent p.A127A 0.04 TCGA-AY-A54L-01 7 88962840 88962840 C T ZNF804B Missense_Mutation p.R182W 0.14 tolerated(0.06) benign(0.04) TCGA-AY-A54L-01 7 92166211 92166211 T G RBM48 Missense_Mutation p.V355G 0.06 tolerated(0.37) benign(0.004) TCGA-AY-A54L-01 7 92731266 92731266 G T SAMD9 Nonsense_Mutation p.S1382* 0.06 TCGA-AY-A54L-01 7 93055834 93055834 C T CALCR Missense_Mutation p.R454H 0.12 tolerated(0.45) possibly_damaging(0.686) TCGA-AY-A54L-01 8 101937217 101937218 TT - YWHAZ Frame_Shift_Del p.K115Sfs*16 0.28 TCGA-AY-A54L-01 8 113308061 113308061 C T CSMD3 Splice_Site p.X2872_splice 0.36 TCGA-AY-A54L-01 8 133187801 133187801 G A KCNQ3 Missense_Mutation p.L278F 0.40 deleterious(0.01) probably_damaging(1) TCGA-AY-A54L-01 8 145947591 145947591 C A ZNF251 Missense_Mutation p.G485V 0.48 deleterious(0) probably_damaging(0.991) TCGA-AY-A54L-01 8 19813513 19813513 C A LPL Missense_Mutation p.L313M 0.08 tolerated(0.16) benign(0.123) TCGA-AY-A54L-01 8 25327443 25327443 G A CDCA2 Missense_Mutation p.G256E 0.29 deleterious(0.05) probably_damaging(0.998) TCGA-AY-A54L-01 8 65494741 65494742 - C BHLHE22 3'UTR 0.20 TCGA-AY-A54L-01 9 103213093 103213093 C T MSANTD3 Nonsense_Mutation p.Q225* 0.12 TCGA-AY-A54L-01 9 107618099 107618099 C G ABCA1 Intron 0.55 TCGA-AY-A54L-01 9 113217938 113217938 C A SVEP1 Missense_Mutation p.C1240F 0.08 probably_damaging(1) TCGA-AY-A54L-01 9 135765164 135765164 T G C9orf9 Intron 0.12 TCGA-AY-A54L-01 9 140356758 140356758 G A PNPLA7 Missense_Mutation p.T1173M 0.14 deleterious(0) probably_damaging(0.954) TCGA-AY-A54L-01 9 140707886 140707886 C T EHMT1 Silent p.A1028A 0.12 TCGA-AY-A54L-01 9 32635509 32635509 C T TAF1L Silent p.S23S 0.05 TCGA-AY-A54L-01 9 35685064 35685064 C A TPM2 Missense_Mutation p.E212D 0.52 tolerated(0.25) benign(0.002) TCGA-AY-A54L-01 9 43861018 43861018 C T CNTNAP3B Missense_Mutation p.T631M 0.08 tolerated(0.28) possibly_damaging(0.537) TCGA-AY-A54L-01 9 74315589 74315589 C T TMEM2 Missense_Mutation p.E1116K 0.09 tolerated(0.43) benign(0.009) TCGA-AY-A54L-01 X 103349772 103349772 T C SLC25A53 Missense_Mutation p.I57V 0.08 tolerated(0.06) possibly_damaging(0.869) TCGA-AY-A54L-01 X 105153616 105153616 G A NRK Silent p.P662P 0.13 TCGA-AY-A54L-01 X 111019739 111019739 T G TRPC5 Missense_Mutation p.E908D 0.34 tolerated_low_confidence(0.63) benign(0.003) TCGA-AY-A54L-01 X 115305117 115305117 C A AGTR2 3'UTR 0.05 TCGA-AY-A54L-01 X 128633801 128633801 C G SMARCA1 Missense_Mutation p.L395F 0.12 deleterious(0) probably_damaging(0.995) TCGA-AY-A54L-01 X 129801647 129801647 C T ENOX2 Missense_Mutation p.R284H 0.12 deleterious(0) possibly_damaging(0.906) TCGA-AY-A54L-01 X 130222703 130222703 C T ARHGAP36 Missense_Mutation p.L530F 0.10 tolerated_low_confidence(0.07) benign(0.012) TCGA-AY-A54L-01 X 1407701 1407701 G A CSF2RA Silent p.A131A 0.36 TCGA-AY-A54L-01 X 153880708 153880708 C A CTAG2 Missense_Mutation p.G156V 0.09 deleterious_low_confidence(0) unknown(0) TCGA-AY-A54L-01 X 30237191 30237191 G C MAGEB2 Missense_Mutation p.G165A 0.34 tolerated(0.07) probably_damaging(0.971) TCGA-AY-A54L-01 X 3228414 3228414 G A MXRA5 Silent p.D2610D 0.22 TCGA-AY-A54L-01 X 37027803 37027803 G A FAM47C Silent p.P440P 0.38 TCGA-AY-A54L-01 X 51075680 51075680 C A NUDT10 Intron 0.29 TCGA-AY-A54L-01 X 70444065 70444065 G A GJB1 Missense_Mutation p.V170I 0.15 tolerated(0.37) benign(0.048) TCGA-AY-A54L-01 X 71715065 71715065 C T HDAC8 Missense_Mutation p.R164Q 0.16 tolerated(0.42) benign(0.004) TCGA-AY-A54L-01 X 8504915 8504915 C G KAL1 Silent p.R506R 0.04 TCGA-AY-A54L-01 X 9001286 9001286 G T FAM9B Intron 0.18 TCGA-AY-A54L-01 X 91131849 91131849 C A PCDH11X Missense_Mutation p.Q204K 0.03 tolerated(0.63) probably_damaging(0.981) TCGA-AY-A54L-01 X 99661931 99661931 G A PCDH19 Silent p.D555D 0.12 TCGA-AY-A69D-01 10 101715261 101715261 G A DNMBP Missense_Mutation p.A657V 0.18 tolerated(0.15) benign(0.012) TCGA-AY-A69D-01 10 102738632 102738632 G A SEMA4G Missense_Mutation p.V224M 0.12 deleterious(0) possibly_damaging(0.625) TCGA-AY-A69D-01 10 19778070 19778070 A T MALRD1 Missense_Mutation p.E1045V 0.43 tolerated(0.66) benign(0.001) TCGA-AY-A69D-01 10 75549793 75549793 C T ZSWIM8 Missense_Mutation p.P273L 0.43 deleterious(0) probably_damaging(0.996) TCGA-AY-A69D-01 10 76735557 76735557 A G KAT6B Missense_Mutation p.K488E 0.30 benign(0.432) TCGA-AY-A69D-01 10 79782010 79782010 A G POLR3A Silent p.L260L 0.10 TCGA-AY-A69D-01 10 8115916 8115916 C T GATA3 Missense_Mutation p.P422L 0.29 deleterious(0) probably_damaging(1) TCGA-AY-A69D-01 11 107396215 107396215 G A ALKBH8 Nonsense_Mutation p.R328* 0.28 TCGA-AY-A69D-01 11 11643053 11643053 C T GALNT18 Missense_Mutation p.G30S 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-AY-A69D-01 11 122756539 122756540 - T C11orf63 5'UTR 0.21 TCGA-AY-A69D-01 11 1264376 1264376 C T MUC5B Missense_Mutation p.T2089M 0.43 unknown(0) TCGA-AY-A69D-01 11 20066699 20066699 G A NAV2 Missense_Mutation p.A1152T 0.40 tolerated(0.98) benign(0.002) TCGA-AY-A69D-01 11 558564 558564 C T C11orf35 Intron 0.41 TCGA-AY-A69D-01 11 55944357 55944357 G T OR5J2 Silent p.V88V 0.47 TCGA-AY-A69D-01 11 62649491 62649491 G A SLC3A2 Missense_Mutation p.G286D 0.49 deleterious(0) probably_damaging(1) TCGA-AY-A69D-01 11 62677543 62677543 G A CHRM1 Missense_Mutation p.R344C 0.24 tolerated(0.05) benign(0.146) TCGA-AY-A69D-01 11 6292358 6292358 C T CCKBR Missense_Mutation p.T310M 0.27 tolerated(0.05) benign(0.276) TCGA-AY-A69D-01 11 66618368 66618368 C A PC Silent p.T750T 0.26 TCGA-AY-A69D-01 11 66620748 66620748 G A PC Missense_Mutation p.P492L 0.43 tolerated(0.1) benign(0.04) TCGA-AY-A69D-01 11 7070941 7070941 C A NLRP14 Silent p.I721I 0.21 TCGA-AY-A69D-01 11 92531863 92531863 C A FAT3 Missense_Mutation p.P1895H 0.18 probably_damaging(1) TCGA-AY-A69D-01 12 100594669 100594669 A G ACTR6 Missense_Mutation p.K14E 0.26 deleterious(0) benign(0.279) TCGA-AY-A69D-01 12 100594686 100594686 T A ACTR6 Missense_Mutation p.H19Q 0.31 tolerated(0.66) benign(0.008) TCGA-AY-A69D-01 12 1025828 1025828 C T RAD52 Silent p.P234P 0.18 TCGA-AY-A69D-01 12 109281243 109281243 C G DAO Missense_Mutation p.T71S 0.12 tolerated(0.12) benign(0.405) TCGA-AY-A69D-01 12 113610198 113610198 G T DDX54 Nonsense_Mutation p.Y413* 0.28 TCGA-AY-A69D-01 12 121881878 121881878 G A KDM2B Silent p.D796D 0.46 TCGA-AY-A69D-01 12 129383807 129383807 T C GLT1D1 Missense_Mutation p.M117T 0.16 deleterious(0) benign(0.092) TCGA-AY-A69D-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.40 deleterious(0.03) possibly_damaging(0.644) TCGA-AY-A69D-01 12 3678684 3678684 C T PRMT8 Silent p.Y222Y 0.40 TCGA-AY-A69D-01 12 52867268 52867268 C A KRT6C Missense_Mutation p.S85I 0.39 tolerated(0.12) unknown(0) TCGA-AY-A69D-01 12 54718941 54718941 G A COPZ1 5'UTR 0.06 TCGA-AY-A69D-01 12 55356343 55356343 G T TESPA1 Missense_Mutation p.L447I 0.35 tolerated_low_confidence(0.3) benign(0.204) TCGA-AY-A69D-01 12 55422743 55422743 C A NEUROD4 3'UTR 0.40 TCGA-AY-A69D-01 12 57548011 57548011 G A LRP1 Missense_Mutation p.D288N 0.46 possibly_damaging(0.851) TCGA-AY-A69D-01 12 7360379 7360379 A G PEX5 Missense_Mutation p.Q379R 0.16 tolerated(0.42) benign(0.003) TCGA-AY-A69D-01 13 112724721 112724721 T G SOX1 3'UTR 0.39 TCGA-AY-A69D-01 13 32747633 32747633 G A FRY Missense_Mutation p.V761I 0.36 tolerated(0.1) benign(0.075) TCGA-AY-A69D-01 13 33016898 33016898 T C N4BP2L2 Silent p.K592K 0.22 TCGA-AY-A69D-01 13 53422150 53422150 G A PCDH8 Missense_Mutation p.P141L 0.37 tolerated(0.68) benign(0.009) TCGA-AY-A69D-01 14 103574096 103574096 C A EXOC3L4 Silent p.A610A 0.36 TCGA-AY-A69D-01 14 104641544 104641544 G A KIF26A Missense_Mutation p.D807N 0.14 deleterious(0) probably_damaging(0.997) TCGA-AY-A69D-01 14 106692108 106692108 C T IGHV3-21 Missense_Mutation p.R6H 0.24 deleterious_low_confidence(0.03) benign(0.412) TCGA-AY-A69D-01 14 106967523 106967523 G A IGHV1-46 5'UTR 0.46 TCGA-AY-A69D-01 14 24886519 24886519 G A NYNRIN Missense_Mutation p.R1855Q 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AY-A69D-01 14 30046310 30046310 C A PRKD1 3'UTR 0.18 TCGA-AY-A69D-01 14 55604926 55604926 G A LGALS3 Missense_Mutation p.G61D 0.27 deleterious(0.03) unknown(0) TCGA-AY-A69D-01 14 73029232 73029232 C T RGS6 3'Flank 0.11 TCGA-AY-A69D-01 14 94674896 94674896 A G PPP4R4 Missense_Mutation p.K96R 0.06 deleterious(0.01) probably_damaging(0.983) TCGA-AY-A69D-01 15 101567506 101567506 C T LRRK1 Nonsense_Mutation p.R816* 0.49 TCGA-AY-A69D-01 15 34016268 34016268 G T RYR3 Missense_Mutation p.S2268I 0.38 benign(0.002) TCGA-AY-A69D-01 15 45454533 45454533 G T DUOX1 Silent p.L1402L 0.53 TCGA-AY-A69D-01 15 54630687 54630687 G A UNC13C Silent p.P1571P 0.33 TCGA-AY-A69D-01 15 65350934 65350934 G A RASL12 Missense_Mutation p.R86C 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-AY-A69D-01 15 67457294 67457294 C T SMAD3 Missense_Mutation p.R90C 0.44 deleterious(0.01) benign(0.307) TCGA-AY-A69D-01 15 68583278 68583278 G A FEM1B Missense_Mutation p.V528M 0.44 tolerated(0.39) possibly_damaging(0.515) TCGA-AY-A69D-01 15 73044636 73044636 G A ADPGK 3'UTR 0.47 TCGA-AY-A69D-01 15 74883636 74883636 G A ARID3B Silent p.A342A 0.42 TCGA-AY-A69D-01 15 75311289 75311289 G A SCAMP5 Missense_Mutation p.A225T 0.23 tolerated(1) possibly_damaging(0.521) TCGA-AY-A69D-01 15 83434730 83434730 C T FSD2 Missense_Mutation p.R536Q 0.57 tolerated(1) benign(0) TCGA-AY-A69D-01 15 90800432 90800432 C T TTLL13 Silent p.D256D 0.23 TCGA-AY-A69D-01 16 13002524 13002524 C T SHISA9 Intron 0.11 TCGA-AY-A69D-01 16 14724016 14724016 G A PARN 5'UTR 0.19 TCGA-AY-A69D-01 16 21666906 21666906 C A METTL9 3'UTR 0.41 TCGA-AY-A69D-01 16 2221594 2221594 G A TRAF7 Missense_Mutation p.A155T 0.31 tolerated(0.26) benign(0.072) TCGA-AY-A69D-01 16 28884920 28884920 G T SH2B1 Missense_Mutation p.G684C 0.29 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-AY-A69D-01 16 4626408 4626408 G A C16orf96 Missense_Mutation p.E643K 0.22 tolerated(0.05) possibly_damaging(0.502) TCGA-AY-A69D-01 16 53340283 53340283 A G CHD9 Missense_Mutation p.M2252V 0.27 unknown(0) TCGA-AY-A69D-01 16 90032357 90032357 G A DEF8 Missense_Mutation p.D509N 0.38 deleterious_low_confidence(0.01) benign(0.372) TCGA-AY-A69D-01 17 18653357 18653357 C T FBXW10 Silent p.A302A 0.37 TCGA-AY-A69D-01 17 18670061 18670061 G A FBXW10 Silent p.T530T 0.23 TCGA-AY-A69D-01 17 2596098 2596098 C T CLUH Silent p.E1057E 0.06 TCGA-AY-A69D-01 17 37118211 37118211 G T FBXO47 Missense_Mutation p.L91I 0.22 tolerated(0.19) benign(0.175) TCGA-AY-A69D-01 17 39620456 39620456 C A KRT32 Splice_Site p.X291_splice 0.44 TCGA-AY-A69D-01 17 40841617 40841617 G A CNTNAP1 Silent p.T569T 0.19 TCGA-AY-A69D-01 17 41959872 41959872 G A MPP2 Missense_Mutation p.T154M 0.48 deleterious(0) probably_damaging(1) TCGA-AY-A69D-01 17 42226388 42226388 C T C17orf53 Missense_Mutation p.P406L 0.10 deleterious(0) probably_damaging(0.998) TCGA-AY-A69D-01 17 43348466 43348466 G A MAP3K14-AS1 3'Flank 0.32 TCGA-AY-A69D-01 17 43552939 43552939 C A PLEKHM1 Missense_Mutation p.Q150H 0.22 tolerated(0.05) benign(0.211) TCGA-AY-A69D-01 17 47869381 47869381 G T KAT7 Missense_Mutation p.S50I 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AY-A69D-01 17 48703879 48703879 C T CACNA1G Missense_Mutation p.R2301W 0.12 deleterious_low_confidence(0.02) benign(0.012) TCGA-AY-A69D-01 17 4883317 4883323 CTACTGA - CAMTA2 Frame_Shift_Del p.S455Qfs*49 0.10 TCGA-AY-A69D-01 17 56357733 56357733 C T MPO Missense_Mutation p.R81Q 0.26 tolerated(0.21) benign(0.065) TCGA-AY-A69D-01 17 61877928 61877928 C T DDX42 Missense_Mutation p.A191V 0.42 tolerated(0.44) benign(0.018) TCGA-AY-A69D-01 17 70118870 70118870 G T SOX9 Nonsense_Mutation p.E148* 0.36 TCGA-AY-A69D-01 17 76098598 76098598 G A TNRC6C Nonsense_Mutation p.W1551* 0.38 TCGA-AY-A69D-01 17 79512836 79512836 C T C17orf70 Missense_Mutation p.R749Q 0.36 tolerated(1) benign(0.007) TCGA-AY-A69D-01 17 8172355 8172355 G A PFAS Missense_Mutation p.G1264R 0.39 deleterious(0) probably_damaging(0.998) TCGA-AY-A69D-01 17 8702539 8702539 C G MFSD6L 5'UTR 0.40 TCGA-AY-A69D-01 17 9604795 9604795 G A USP43 Missense_Mutation p.E597K 0.31 deleterious(0.04) benign(0.427) TCGA-AY-A69D-01 18 29691778 29691778 C T RNF138 Missense_Mutation p.R58C 0.38 deleterious(0) probably_damaging(0.993) TCGA-AY-A69D-01 18 44561674 44561674 G A TCEB3B 5'UTR 0.42 TCGA-AY-A69D-01 18 46447737 46447737 C A SMAD7 3'UTR 0.24 TCGA-AY-A69D-01 18 48256050 48256050 C T MAPK4 Silent p.D530D 0.32 TCGA-AY-A69D-01 18 60999112 60999112 C T KDSR Missense_Mutation p.R301H 0.13 deleterious(0) probably_damaging(0.999) TCGA-AY-A69D-01 18 61304856 61304856 G T SERPINB4 3'UTR 0.26 TCGA-AY-A69D-01 18 6985287 6985287 C T LAMA1 Missense_Mutation p.R1870K 0.27 tolerated(0.09) benign(0.033) TCGA-AY-A69D-01 18 77171116 77171116 C G NFATC1 Missense_Mutation p.H268D 0.27 tolerated(0.07) benign(0.066) TCGA-AY-A69D-01 19 11152141 11152141 C T SMARCA4 Silent p.R1443R 0.45 TCGA-AY-A69D-01 19 12691589 12691589 G A ZNF490 Nonsense_Mutation p.R434* 0.45 TCGA-AY-A69D-01 19 12996468 12996468 C T KLF1 Silent p.A192A 0.52 TCGA-AY-A69D-01 19 1585174 1585174 C T MBD3 Silent p.A50A 0.14 TCGA-AY-A69D-01 19 15990168 15990168 G A CYP4F2 Missense_Mutation p.S462L 0.38 deleterious(0) probably_damaging(0.987) TCGA-AY-A69D-01 19 16243136 16243136 C T RAB8A 3'UTR 0.41 TCGA-AY-A69D-01 19 17013563 17013563 G A CPAMD8 Silent p.S1574S 0.14 TCGA-AY-A69D-01 19 17306037 17306037 C T MYO9B Silent p.S1267S 0.21 TCGA-AY-A69D-01 19 19243258 19243258 C T TMEM161A Missense_Mutation p.V116M 0.32 deleterious(0) probably_damaging(0.95) TCGA-AY-A69D-01 19 21132473 21132473 C A ZNF85 Missense_Mutation p.L385I 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-AY-A69D-01 19 3910869 3910869 T A ATCAY Missense_Mutation p.I283N 0.05 deleterious(0) probably_damaging(0.967) TCGA-AY-A69D-01 19 40009759 40009759 G A SELV Missense_Mutation p.V338I 0.12 tolerated(0.68) possibly_damaging(0.474) TCGA-AY-A69D-01 19 4099406 4099406 G A MAP2K2 Missense_Mutation p.R238W 0.45 deleterious(0) probably_damaging(1) TCGA-AY-A69D-01 19 44378049 44378049 C A ZNF404 Missense_Mutation p.C106F 0.24 tolerated(0.63) benign(0.031) TCGA-AY-A69D-01 19 44833896 44833896 C A ZNF112 Missense_Mutation p.W144C 0.14 tolerated(0.16) benign(0.009) TCGA-AY-A69D-01 19 46270199 46270199 C T SIX5 Missense_Mutation p.G340R 0.10 deleterious(0) probably_damaging(0.996) TCGA-AY-A69D-01 19 47152076 47152076 G A DACT3 Missense_Mutation p.A518V 0.19 tolerated(0.56) possibly_damaging(0.695) TCGA-AY-A69D-01 19 49173712 49173712 G A NTN5 Missense_Mutation p.R178C 0.15 deleterious(0) probably_damaging(0.958) TCGA-AY-A69D-01 19 49220043 49220043 G T MAMSTR Intron 0.21 TCGA-AY-A69D-01 19 52273328 52273329 - C FPR2 3'UTR 0.17 TCGA-AY-A69D-01 19 53057076 53057076 A C ZNF808 Missense_Mutation p.T303P 0.27 tolerated(0.08) benign(0.428) TCGA-AY-A69D-01 19 53058569 53058569 C T ZNF808 Silent p.F800F 0.16 TCGA-AY-A69D-01 19 53268765 53268765 T C ZNF600 3'UTR 0.06 TCGA-AY-A69D-01 19 53343484 53343484 T C ZNF468 3'UTR 0.31 TCGA-AY-A69D-01 19 53854788 53854788 C T ZNF845 Missense_Mutation p.T287I 0.22 tolerated(0.23) probably_damaging(0.998) TCGA-AY-A69D-01 19 54212088 54212088 G T MIR518C RNA 0.27 TCGA-AY-A69D-01 19 55450441 55450441 C A NLRP7 Missense_Mutation p.E582D 0.22 tolerated(0.14) possibly_damaging(0.621) TCGA-AY-A69D-01 19 55450903 55450903 G A NLRP7 Silent p.S428S 0.13 TCGA-AY-A69D-01 19 57724010 57724010 G A ZNF264 Silent p.E515E 0.09 TCGA-AY-A69D-01 19 58102514 58102514 C G ZIK1 Missense_Mutation p.S445R 0.12 tolerated(0.29) probably_damaging(0.998) TCGA-AY-A69D-01 19 58152600 58152600 G T ZNF211 Missense_Mutation p.R314I 0.19 deleterious(0.04) benign(0.298) TCGA-AY-A69D-01 19 58290206 58290206 G C ZNF586 Missense_Mutation p.G84A 0.12 tolerated(0.23) benign(0.38) TCGA-AY-A69D-01 19 58596735 58596735 G A ZSCAN18 Missense_Mutation p.R340W 0.23 tolerated(0.11) benign(0.002) TCGA-AY-A69D-01 19 58880099 58880099 C T ZNF837 Missense_Mutation p.A201T 0.14 tolerated(0.46) benign(0.019) TCGA-AY-A69D-01 19 8368855 8368855 C T CD320 Missense_Mutation p.R129H 0.36 tolerated(0.28) benign(0.014) TCGA-AY-A69D-01 19 9299010 9299010 C T OR7D2 3'UTR 0.26 TCGA-AY-A69D-01 1 158943529 158943529 C A PYHIN1 Silent p.S484S 0.11 TCGA-AY-A69D-01 1 166039445 166039445 G A FAM78B 3'UTR 0.04 TCGA-AY-A69D-01 1 167973107 167973107 G A DCAF6 Splice_Site p.X333_splice 0.03 TCGA-AY-A69D-01 1 171174688 171174688 C T FMO2 Silent p.L366L 0.20 TCGA-AY-A69D-01 1 19180918 19180918 G A TAS1R2 Missense_Mutation p.P349L 0.24 tolerated(0.57) benign(0.11) TCGA-AY-A69D-01 1 19482156 19482156 C T UBR4 Missense_Mutation p.D2027N 0.08 benign(0.287) TCGA-AY-A69D-01 1 21016783 21016783 C T KIF17 Missense_Mutation p.E427K 0.48 deleterious(0) benign(0.285) TCGA-AY-A69D-01 1 210856611 210856611 T A KCNH1 3'UTR 0.42 TCGA-AY-A69D-01 1 21771521 21771521 C T NBPF3 5'UTR 0.19 TCGA-AY-A69D-01 1 228362690 228362690 C T IBA57 Silent p.L213L 0.56 TCGA-AY-A69D-01 1 228509890 228509890 G C OBSCN Missense_Mutation p.L6073F 0.15 benign(0.301) TCGA-AY-A69D-01 1 25655386 25655386 C A RHD Intron 0.46 TCGA-AY-A69D-01 1 33959101 33959101 C T ZSCAN20 Missense_Mutation p.L587F 0.43 tolerated(0.46) benign(0.093) TCGA-AY-A69D-01 1 39876503 39876503 C T KIAA0754 Missense_Mutation p.S53L 0.07 benign(0) TCGA-AY-A69D-01 1 40029545 40029545 G A PABPC4 Silent p.A501A 0.54 TCGA-AY-A69D-01 1 78383424 78383424 G A NEXN Nonsense_Mutation p.W67* 0.28 TCGA-AY-A69D-01 1 85583457 85583457 A G WDR63 Missense_Mutation p.N611S 0.22 tolerated(1) benign(0.002) TCGA-AY-A69D-01 1 9165574 9165574 C T GPR157 Missense_Mutation p.V255M 0.28 tolerated(0.14) possibly_damaging(0.861) TCGA-AY-A69D-01 20 3145360 3145360 G A LZTS3 Missense_Mutation p.R588W 0.21 deleterious(0) probably_damaging(0.996) TCGA-AY-A69D-01 20 33609007 33609007 G A TRPC4AP Missense_Mutation p.R402C 0.21 deleterious(0) probably_damaging(0.965) TCGA-AY-A69D-01 20 40980830 40980830 G T PTPRT Silent p.L552L 0.37 TCGA-AY-A69D-01 20 47887341 47887341 C T ZNFX1 Missense_Mutation p.M336I 0.31 tolerated(0.43) benign(0.005) TCGA-AY-A69D-01 20 54824593 54824593 C T MC3R Missense_Mutation p.P232S 0.25 tolerated(0.38) benign(0.158) TCGA-AY-A69D-01 20 61957029 61957029 G A COL20A1 Missense_Mutation p.G1120S 0.04 deleterious(0.03) probably_damaging(0.964) TCGA-AY-A69D-01 21 27071055 27071055 G A JAM2 Missense_Mutation p.R154Q 0.48 deleterious(0.03) possibly_damaging(0.674) TCGA-AY-A69D-01 22 36661889 36661889 C T APOL1 Missense_Mutation p.T352M 0.31 tolerated(1) benign(0.009) TCGA-AY-A69D-01 22 42608608 42608608 G A TCF20 Missense_Mutation p.P902S 0.16 benign(0.089) TCGA-AY-A69D-01 22 45283925 45283925 C T PHF21B Missense_Mutation p.G372E 0.37 tolerated(1) possibly_damaging(0.672) TCGA-AY-A69D-01 22 45914566 45914566 C T FBLN1 Silent p.D28D 0.39 TCGA-AY-A69D-01 22 45937241 45937241 C T FBLN1 Missense_Mutation p.T352M 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-AY-A69D-01 22 50500035 50500035 C T MLC1 Missense_Mutation p.V371I 0.48 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-AY-A69D-01 22 51042307 51042307 C T MAPK8IP2 Silent p.P193P 0.27 TCGA-AY-A69D-01 2 113779993 113779993 T A IL36B 3'UTR 0.30 TCGA-AY-A69D-01 2 141260594 141260594 C G LRP1B Missense_Mutation p.G2867A 0.06 probably_damaging(0.939) TCGA-AY-A69D-01 2 149679731 149679731 G A KIF5C Missense_Mutation p.R51K 0.13 tolerated(0.67) benign(0.017) TCGA-AY-A69D-01 2 168811965 168811965 G A STK39 3'UTR 0.37 TCGA-AY-A69D-01 2 173349919 173349919 G A ITGA6 Missense_Mutation p.R594H 0.26 tolerated(0.06) benign(0.048) TCGA-AY-A69D-01 2 174224061 174224061 G T CDCA7 Missense_Mutation p.G76C 0.33 deleterious(0) probably_damaging(1) TCGA-AY-A69D-01 2 175945448 175945448 G A ATF2 Missense_Mutation p.L411F 0.14 deleterious(0) probably_damaging(0.99) TCGA-AY-A69D-01 2 201440144 201440144 A C SGOL2 Silent p.R1248R 0.07 TCGA-AY-A69D-01 2 210804286 210804286 G A UNC80 Missense_Mutation p.V2120I 0.23 probably_damaging(0.965) TCGA-AY-A69D-01 2 225343064 225343064 T C CUL3 Splice_Site p.X677_splice 0.39 TCGA-AY-A69D-01 2 232577673 232577673 C T PTMA 3'UTR 0.33 TCGA-AY-A69D-01 2 241075702 241075702 C T MYEOV2 Silent p.E21E 0.17 TCGA-AY-A69D-01 2 29356684 29356684 C A CLIP4 Splice_Site p.X177_splice 0.44 TCGA-AY-A69D-01 2 50758395 50758395 C A NRXN1 Missense_Mutation p.A813S 0.38 tolerated(0.24) benign(0.056) TCGA-AY-A69D-01 2 61298785 61298785 T G KIAA1841 Silent p.P65P 0.08 TCGA-AY-A69D-01 2 71017733 71017733 G A FIGLA Missense_Mutation p.A13V 0.50 tolerated_low_confidence(0.19) benign(0.084) TCGA-AY-A69D-01 2 71839870 71839870 C T DYSF Missense_Mutation p.R1441C 0.33 deleterious(0.02) benign(0.001) TCGA-AY-A69D-01 2 96780705 96780705 G A ADRA2B Missense_Mutation p.P395L 0.17 tolerated(0.06) possibly_damaging(0.884) TCGA-AY-A69D-01 2 98340766 98340766 C T ZAP70 Silent p.R89R 0.26 TCGA-AY-A69D-01 3 125731544 125731544 T C SLC41A3 Missense_Mutation p.Y340C 0.31 deleterious(0.01) probably_damaging(0.976) TCGA-AY-A69D-01 3 134670281 134670281 C T EPHB1 Silent p.F64F 0.44 TCGA-AY-A69D-01 3 140401925 140401925 C T TRIM42 Silent p.H321H 0.41 TCGA-AY-A69D-01 3 159571039 159571039 C T SCHIP1 Intron 0.36 TCGA-AY-A69D-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.44 tolerated(0.21) possibly_damaging(0.893) TCGA-AY-A69D-01 3 178938922 178938922 G A PIK3CA Missense_Mutation p.E722K 0.43 tolerated(0.11) benign(0.012) TCGA-AY-A69D-01 3 180694063 180694063 C T FXR1 Silent p.L617L 0.29 TCGA-AY-A69D-01 3 46622683 46622683 A T TDGF1 Silent p.A170A 0.56 TCGA-AY-A69D-01 3 47041680 47041680 G T NBEAL2 Missense_Mutation p.S1364I 0.19 deleterious(0.01) possibly_damaging(0.661) TCGA-AY-A69D-01 3 47125232 47125232 A G SETD2 Missense_Mutation p.L2013P 0.61 deleterious(0.01) probably_damaging(0.998) TCGA-AY-A69D-01 3 47461103 47461103 G A SCAP Missense_Mutation p.P552L 0.16 deleterious(0.03) possibly_damaging(0.493) TCGA-AY-A69D-01 3 4825556 4825556 C T ITPR1 Silent p.D2174D 0.44 TCGA-AY-A69D-01 3 64619506 64619506 A G ADAMTS9 Missense_Mutation p.S636P 0.17 tolerated(0.1) possibly_damaging(0.859) TCGA-AY-A69D-01 3 79067699 79067699 C A ROBO1 Intron 0.11 TCGA-AY-A69D-01 4 119754863 119754863 C T SEC24D 5'UTR 0.27 TCGA-AY-A69D-01 4 123185464 123185464 C G KIAA1109 Missense_Mutation p.S2400C 0.04 probably_damaging(0.969) TCGA-AY-A69D-01 4 15517581 15517581 G A CC2D2A Missense_Mutation p.R324H 0.26 tolerated(0.55) possibly_damaging(0.498) TCGA-AY-A69D-01 4 183959396 183959396 G A FAM92A1P2 RNA 0.23 TCGA-AY-A69D-01 4 187517875 187517875 G T FAT1 Missense_Mutation p.F4273L 0.20 probably_damaging(0.995) TCGA-AY-A69D-01 4 187525575 187525575 C T FAT1 Missense_Mutation p.A3502T 0.19 benign(0.012) TCGA-AY-A69D-01 4 187530956 187530956 G A FAT1 Missense_Mutation p.T3356M 0.16 benign(0.184) TCGA-AY-A69D-01 4 4861879 4861879 G A MSX1 Missense_Mutation p.G85S 0.25 tolerated(0.36) benign(0.003) TCGA-AY-A69D-01 4 53740008 53740008 T C SCFD2 3'UTR 0.15 TCGA-AY-A69D-01 4 70823192 70823197 GAGGAA - CSN2 In_Frame_Del p.I157_Q159delinsK 0.44 TCGA-AY-A69D-01 4 76721930 76721930 G A USO1 Silent p.T623T 0.33 TCGA-AY-A69D-01 4 862473 862473 C T GAK Missense_Mutation p.G750E 0.27 deleterious(0) probably_damaging(0.992) TCGA-AY-A69D-01 5 112173617 112173618 - TC APC Frame_Shift_Ins p.D777* 0.25 TCGA-AY-A69D-01 5 112175508 112175509 AG - APC Frame_Shift_Del p.S1407* 0.24 TCGA-AY-A69D-01 5 122682315 122682315 A T CEP120 Missense_Mutation p.D953E 0.36 deleterious(0) possibly_damaging(0.841) TCGA-AY-A69D-01 5 13735415 13735415 C T DNAH5 Silent p.P3862P 0.47 TCGA-AY-A69D-01 5 140482745 140482745 A G PCDHB3 3'UTR 0.44 TCGA-AY-A69D-01 5 141694035 141694035 C T SPRY4 Silent p.E236E 0.38 TCGA-AY-A69D-01 5 175110385 175110385 G A HRH2 Missense_Mutation p.R50H 0.33 deleterious(0.01) probably_damaging(1) TCGA-AY-A69D-01 5 180047665 180047665 C T FLT4 Missense_Mutation p.V784I 0.44 deleterious(0.04) benign(0.108) TCGA-AY-A69D-01 5 36680570 36680570 G A SLC1A3 Missense_Mutation p.V390M 0.30 tolerated(0.08) probably_damaging(0.975) TCGA-AY-A69D-01 5 40853443 40853443 C G CARD6 Missense_Mutation p.S670C 0.28 tolerated(0.15) benign(0.002) TCGA-AY-A69D-01 5 52096559 52096559 A T PELO Missense_Mutation p.T111S 0.18 tolerated(0.33) benign(0.088) TCGA-AY-A69D-01 5 55407549 55407549 C T ANKRD55 Silent p.R342R 0.34 TCGA-AY-A69D-01 6 112462038 112462038 G A LAMA4 Missense_Mutation p.S967L 0.41 tolerated(0.54) benign(0.001) TCGA-AY-A69D-01 6 123592286 123592287 - T TRDN Frame_Shift_Ins p.T573Nfs*11 0.26 TCGA-AY-A69D-01 6 139591694 139591694 C A TXLNB Nonsense_Mutation p.E196* 0.11 TCGA-AY-A69D-01 6 150570075 150570075 T C PPP1R14C 3'UTR 0.17 TCGA-AY-A69D-01 6 154431487 154431487 C A OPRM1 Intron 0.29 TCGA-AY-A69D-01 6 155500590 155500590 G T TIAM2 Missense_Mutation p.G903W 0.13 deleterious(0) probably_damaging(1) TCGA-AY-A69D-01 6 157527423 157527426 AAGG CAAGA ARID1B Frame_Shift_Ins p.R1717Kfs*4 0.33 TCGA-AY-A69D-01 6 24454339 24454339 G A GPLD1 Silent p.I413I 0.17 TCGA-AY-A69D-01 6 28359277 28359277 G C ZSCAN12 Missense_Mutation p.H264D 0.18 tolerated(0.07) benign(0.005) TCGA-AY-A69D-01 6 33359639 33359639 G T KIFC1 5'UTR 0.32 TCGA-AY-A69D-01 6 49494445 49494445 C T GLYATL3 Silent p.L229L 0.38 TCGA-AY-A69D-01 6 50683140 50683140 C A TFAP2D Missense_Mutation p.H117Q 0.38 tolerated(0.14) benign(0.011) TCGA-AY-A69D-01 6 56330945 56330945 C A DST Missense_Mutation p.V4917L 0.14 probably_damaging(0.997) TCGA-AY-A69D-01 6 66205142 66205142 G T EYS Nonsense_Mutation p.Y54* 0.20 TCGA-AY-A69D-01 6 99285050 99285050 A C POU3F2 3'UTR 0.29 TCGA-AY-A69D-01 7 114282676 114282676 C A FOXP2 Missense_Mutation p.D354E 0.28 tolerated(0.69) unknown(0) TCGA-AY-A69D-01 7 141385279 141385279 G A KIAA1147 Missense_Mutation p.R176W 0.35 deleterious(0) probably_damaging(0.986) TCGA-AY-A69D-01 7 149521712 149521712 C T SSPO RNA 0.38 TCGA-AY-A69D-01 7 151873303 151873303 G A KMT2C Nonsense_Mutation p.R3079* 0.42 TCGA-AY-A69D-01 7 34994310 34994310 G A DPY19L1 Silent p.D367D 0.32 TCGA-AY-A69D-01 7 42959429 42959429 G T PSMA2 Intron 0.47 TCGA-AY-A69D-01 7 51094361 51094361 G A COBL Missense_Mutation p.T1129M 0.39 deleterious(0.02) benign(0.102) TCGA-AY-A69D-01 7 64167334 64167334 T C ZNF107 Missense_Mutation p.Y218H 0.18 deleterious(0) possibly_damaging(0.485) TCGA-AY-A69D-01 7 6639658 6639658 C T C7orf26 Missense_Mutation p.P260L 0.38 tolerated(0.11) possibly_damaging(0.851) TCGA-AY-A69D-01 7 72849321 72849321 G A FZD9 Silent p.S328S 0.34 TCGA-AY-A69D-01 7 82388001 82388001 T A PCLO Missense_Mutation p.M5107L 0.09 unknown(0) TCGA-AY-A69D-01 7 99695537 99695537 C T MCM7 Missense_Mutation p.R302Q 0.33 tolerated(0.16) benign(0.052) TCGA-AY-A69D-01 8 104453819 104453819 G A DCAF13 Missense_Mutation p.R560H 0.22 deleterious(0.03) benign(0.087) TCGA-AY-A69D-01 8 113988197 113988197 G C CSMD3 Nonsense_Mutation p.S404* 0.05 TCGA-AY-A69D-01 8 143694316 143694316 G A ARC 3'UTR 0.35 TCGA-AY-A69D-01 8 144659235 144659235 G A NAPRT1 Silent p.D227D 0.25 TCGA-AY-A69D-01 8 145150032 145150032 G A CYC1 Silent p.G10G 0.17 TCGA-AY-A69D-01 8 42275478 42275478 G A SLC20A2 Missense_Mutation p.S601L 0.52 deleterious(0) probably_damaging(0.977) TCGA-AY-A69D-01 8 6302858 6302858 G A MCPH1 Missense_Mutation p.D539N 0.53 tolerated(0.58) benign(0.272) TCGA-AY-A69D-01 8 67955396 67955396 A T COPS5 3'UTR 0.13 TCGA-AY-A69D-01 8 99053964 99053964 A G RPL30 3'UTR 0.17 TCGA-AY-A69D-01 8 99441118 99441118 G A KCNS2 Missense_Mutation p.R304H 0.27 deleterious(0) probably_damaging(0.997) TCGA-AY-A69D-01 9 100308593 100308593 G T TMOD1 Missense_Mutation p.D83Y 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-AY-A69D-01 9 111616986 111616986 C T ACTL7B Missense_Mutation p.V409M 0.35 tolerated(0.11) benign(0.286) TCGA-AY-A69D-01 9 111692111 111692111 C - IKBKAP Frame_Shift_Del p.E81Sfs*28 0.22 TCGA-AY-A69D-01 9 111929198 111929198 C T FRRS1L Missense_Mutation p.R125H 0.35 deleterious(0.01) benign(0.284) TCGA-AY-A69D-01 9 117169120 117169120 C T DFNB31 Missense_Mutation p.R584H 0.38 tolerated(0.09) benign(0.001) TCGA-AY-A69D-01 9 119462874 119462874 G A TRIM32 3'UTR 0.18 TCGA-AY-A69D-01 9 137693835 137693835 C T COL5A1 Silent p.P996P 0.08 TCGA-AY-A69D-01 9 138379139 138379139 C G PPP1R26 Missense_Mutation p.P928R 0.41 deleterious(0.01) benign(0.155) TCGA-AY-A69D-01 9 139360870 139360870 G A SEC16A Missense_Mutation p.T1325M 0.34 deleterious(0.04) probably_damaging(0.921) TCGA-AY-A69D-01 9 139815586 139815586 G A TRAF2 Missense_Mutation p.V353I 0.44 tolerated(0.28) benign(0.001) TCGA-AY-A69D-01 9 2081899 2081899 T C SMARCA2 Missense_Mutation p.M751T 0.66 benign(0.01) TCGA-AY-A69D-01 9 841973 841973 G A DMRT1 Silent p.S45S 0.72 TCGA-AY-A69D-01 9 91793326 91793326 G A SHC3 Missense_Mutation p.S17L 0.40 deleterious(0) probably_damaging(0.953) TCGA-AY-A69D-01 X 103080634 103080634 G A RAB9B Silent p.Y27Y 0.18 TCGA-AY-A69D-01 X 105011438 105011438 G T IL1RAPL2 Missense_Mutation p.R615S 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AY-A69D-01 X 106096831 106096831 C A TBC1D8B Missense_Mutation p.T735N 0.23 tolerated(0.21) benign(0) TCGA-AY-A69D-01 X 106841251 106841251 G T FRMPD3 Missense_Mutation p.Q747H 0.28 deleterious(0.01) probably_damaging(0.975) TCGA-AY-A69D-01 X 112054600 112054600 C T AMOT Missense_Mutation p.V472I 0.22 unknown(0) TCGA-AY-A69D-01 X 115572138 115572138 C T SLC6A14 Silent p.A73A 0.20 TCGA-AY-A69D-01 X 117761525 117761525 G T DOCK11 Missense_Mutation p.S1216I 0.26 tolerated(0.24) benign(0) TCGA-AY-A69D-01 X 119388717 119388717 C A ZBTB33 Missense_Mutation p.H483N 0.22 deleterious(0) probably_damaging(0.991) TCGA-AY-A69D-01 X 1584304 1584304 G A P2RY8 3'UTR 0.25 TCGA-AY-A69D-01 X 32486785 32486785 A G DMD Missense_Mutation p.Y998H 0.21 probably_damaging(0.994) TCGA-AY-A69D-01 X 38268040 38268040 G T OTC Missense_Mutation p.A237S 0.21 tolerated(0.59) benign(0.096) TCGA-AY-A69D-01 X 57936458 57936458 C T ZXDA Missense_Mutation p.A133T 0.56 tolerated_low_confidence(0.13) benign(0.005) TCGA-AY-A69D-01 X 69670626 69670626 C T DLG3 Silent p.Y326Y 0.22 TCGA-AY-A69D-01 X 76907833 76907833 T A ATRX Missense_Mutation p.E1443V 0.05 benign(0.007) TCGA-AY-A69D-01 X 79932680 79932680 A C BRWD3 Missense_Mutation p.L1613V 0.04 tolerated_low_confidence(0.32) benign(0.073) TCGA-AY-A71X-01 10 120801803 120801803 G A EIF3A Missense_Mutation p.R1077W 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.689) TCGA-AY-A71X-01 10 131639294 131639294 C T EBF3 Missense_Mutation p.G450S 0.32 tolerated_low_confidence(0.1) benign(0.11) TCGA-AY-A71X-01 10 134942206 134942206 G A GPR123 Missense_Mutation p.G292S 0.51 deleterious(0) probably_damaging(1) TCGA-AY-A71X-01 10 5471142 5471142 C T NET1 Missense_Mutation p.R69C 0.44 deleterious(0.02) probably_damaging(0.964) TCGA-AY-A71X-01 10 70502205 70502205 C G CCAR1 Missense_Mutation p.P133A 0.16 deleterious(0.02) probably_damaging(0.971) TCGA-AY-A71X-01 10 73558900 73558900 G A CDH23 Missense_Mutation p.E123K 0.25 deleterious(0) possibly_damaging(0.681) TCGA-AY-A71X-01 11 55038177 55038177 A T TRIM48 3'UTR 0.54 TCGA-AY-A71X-01 11 64812792 64812792 G T NAALADL1 Missense_Mutation p.T725K 0.41 tolerated(0.27) benign(0.012) TCGA-AY-A71X-01 11 71727565 71727565 T G NUMA1 Missense_Mutation p.E377D 0.27 possibly_damaging(0.46) TCGA-AY-A71X-01 11 7669622 7669622 G A PPFIBP2 Missense_Mutation p.A551T 0.06 tolerated(0.08) benign(0.231) TCGA-AY-A71X-01 11 93424912 93424912 C T KIAA1731 Missense_Mutation p.S467L 0.57 tolerated(0.65) benign(0.056) TCGA-AY-A71X-01 11 99715920 99715920 C A CNTN5 Missense_Mutation p.S168Y 0.60 tolerated(1) benign(0.006) TCGA-AY-A71X-01 12 101016132 101016132 G A GAS2L3 Missense_Mutation p.R243Q 0.43 deleterious(0) probably_damaging(0.956) TCGA-AY-A71X-01 12 117494629 117494629 C T TESC Missense_Mutation p.R64H 0.40 tolerated(0.34) benign(0.003) TCGA-AY-A71X-01 12 123200903 123200903 G A HCAR3 Missense_Mutation p.R128W 0.09 deleterious(0) probably_damaging(1) TCGA-AY-A71X-01 12 132681779 132681779 C T GALNT9 Missense_Mutation p.R196Q 0.41 deleterious(0.02) possibly_damaging(0.49) TCGA-AY-A71X-01 12 247481 247481 G A IQSEC3 Missense_Mutation p.A318T 0.46 deleterious(0) probably_damaging(0.999) TCGA-AY-A71X-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.53 deleterious(0) possibly_damaging(0.479) TCGA-AY-A71X-01 12 53451878 53451878 G A TENC1 Missense_Mutation p.D373N 0.47 deleterious(0) probably_damaging(0.998) TCGA-AY-A71X-01 12 91348009 91348009 G A CCER1 Missense_Mutation p.R171W 0.22 deleterious(0) possibly_damaging(0.548) TCGA-AY-A71X-01 13 113052453 113052453 G A SPACA7 Splice_Site p.X81_splice 0.35 TCGA-AY-A71X-01 13 45965459 45965459 G A SLC25A30 3'Flank 0.35 TCGA-AY-A71X-01 13 78318652 78318652 G A SLAIN1 Intron 0.50 TCGA-AY-A71X-01 14 100363618 100363618 G A EML1 Missense_Mutation p.D291N 0.32 deleterious(0) possibly_damaging(0.671) TCGA-AY-A71X-01 15 29429254 29429254 C T FAM189A1 Silent p.P258P 0.33 TCGA-AY-A71X-01 15 45396525 45396525 G A DUOX2 Silent p.P791P 0.44 TCGA-AY-A71X-01 15 52656892 52656892 C A MYO5A Missense_Mutation p.M1056I 0.05 tolerated(0.29) benign(0.165) TCGA-AY-A71X-01 15 64970531 64970531 C T ZNF609 Missense_Mutation p.R1207W 0.55 deleterious(0) probably_damaging(1) TCGA-AY-A71X-01 15 74640327 74640327 G A CYP11A1 Silent p.S113S 0.48 TCGA-AY-A71X-01 16 4738680 4738680 C T MGRN1 Intron 0.34 TCGA-AY-A71X-01 16 71898077 71898077 G A ZNF821 Silent p.C127C 0.50 TCGA-AY-A71X-01 17 27287980 27287980 C T SEZ6 Missense_Mutation p.G418R 0.49 deleterious(0) probably_damaging(1) TCGA-AY-A71X-01 17 42855595 42855595 C T ADAM11 Missense_Mutation p.T754M 0.40 deleterious(0) probably_damaging(0.996) TCGA-AY-A71X-01 17 4711093 4711093 T C PLD2 Missense_Mutation p.F9S 0.44 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-AY-A71X-01 17 58292025 58292025 G A USP32 Missense_Mutation p.R660C 0.35 deleterious(0) possibly_damaging(0.759) TCGA-AY-A71X-01 17 71389789 71389789 C T SDK2 Missense_Mutation p.V1270M 0.48 deleterious(0.01) benign(0.378) TCGA-AY-A71X-01 17 7496088 7496088 G A FXR2 Silent p.R551R 0.47 TCGA-AY-A71X-01 17 79287547 79287547 C T TMEM105 Silent p.G98G 0.37 TCGA-AY-A71X-01 18 30092415 30092415 T C WBP11P1 RNA 0.05 TCGA-AY-A71X-01 18 77917480 77917480 C T PARD6G 3'UTR 0.27 TCGA-AY-A71X-01 18 8783777 8783777 C T SOGA2 Missense_Mutation p.R223W 0.44 deleterious(0) probably_damaging(1) TCGA-AY-A71X-01 19 18252820 18252820 C T MAST3 Silent p.D749D 0.46 TCGA-AY-A71X-01 19 2290404 2290404 G A LINGO3 Missense_Mutation p.R458C 0.38 tolerated(0.12) possibly_damaging(0.802) TCGA-AY-A71X-01 19 36435827 36435827 C T LRFN3 Missense_Mutation p.P598L 0.41 tolerated(0.14) benign(0.066) TCGA-AY-A71X-01 19 3751318 3751318 G A APBA3 Missense_Mutation p.L509F 0.42 deleterious(0) probably_damaging(0.996) TCGA-AY-A71X-01 19 39437165 39437165 C T CTC-360G5.8 Silent p.G73G 0.44 TCGA-AY-A71X-01 19 42301607 42301607 G T CEACAM3 Missense_Mutation p.V51L 0.44 deleterious(0) probably_damaging(0.919) TCGA-AY-A71X-01 19 52497119 52497119 C T ZNF615 Missense_Mutation p.E415K 0.46 deleterious(0.02) benign(0.439) TCGA-AY-A71X-01 19 55331311 55331311 C T KIR3DL1 Missense_Mutation p.L167F 0.48 tolerated(0.12) benign(0.421) TCGA-AY-A71X-01 19 56243413 56243413 C T NLRP9 Missense_Mutation p.R595H 0.50 tolerated(1) benign(0.002) TCGA-AY-A71X-01 1 101186183 101186183 G A VCAM1 Silent p.T72T 0.42 TCGA-AY-A71X-01 1 109472416 109472416 C T GPSM2 Missense_Mutation p.R637W 0.44 deleterious(0) probably_damaging(0.956) TCGA-AY-A71X-01 1 143912535 143912535 A C FAM72D 5'UTR 0.45 TCGA-AY-A71X-01 1 152079713 152079713 C T TCHH 3'UTR 0.44 TCGA-AY-A71X-01 1 160012247 160012247 G A KCNJ10 Nonsense_Mutation p.R26* 0.40 TCGA-AY-A71X-01 1 17084504 17084504 G A MST1L RNA 0.07 TCGA-AY-A71X-01 1 170928620 170928620 T A MROH9 Missense_Mutation p.L57Q 0.49 tolerated(0.09) benign(0.21) TCGA-AY-A71X-01 1 207753705 207753705 C T CR1 Missense_Mutation p.A1686V 0.07 tolerated(0.1) benign(0.068) TCGA-AY-A71X-01 1 246939674 246939674 G A RP11-439E19.10 3'Flank 0.49 TCGA-AY-A71X-01 1 248202236 248202236 G T OR2L2 Missense_Mutation p.A223S 0.51 tolerated(0.06) benign(0.262) TCGA-AY-A71X-01 1 32627990 32627990 G A KPNA6 Missense_Mutation p.R259H 0.37 tolerated(0.24) benign(0.022) TCGA-AY-A71X-01 1 35944803 35944803 G A KIAA0319L Missense_Mutation p.A226V 0.39 tolerated(0.29) benign(0.002) TCGA-AY-A71X-01 1 74835984 74835984 G T FPGT-TNNI3K Missense_Mutation p.L674F 0.41 tolerated(0.08) benign(0.04) TCGA-AY-A71X-01 1 89448360 89448360 C A RBMXL1 Missense_Mutation p.G384W 0.04 deleterious(0) unknown(0) TCGA-AY-A71X-01 1 92518142 92518142 G A EPHX4 Missense_Mutation p.E262K 0.44 deleterious(0) possibly_damaging(0.596) TCGA-AY-A71X-01 20 39741463 39741464 - A TOP1 Frame_Shift_Ins p.C453Mfs*40 0.20 TCGA-AY-A71X-01 20 53208204 53208204 C T DOK5 Silent p.G153G 0.38 TCGA-AY-A71X-01 21 31709740 31709740 C T KRTAP27-1 Missense_Mutation p.G83R 0.40 tolerated(1) benign(0.002) TCGA-AY-A71X-01 21 36171639 36171639 C - RUNX1 Frame_Shift_Del p.G309Afs*2 0.29 TCGA-AY-A71X-01 22 17072856 17072856 G A CCT8L2 Silent p.D195D 0.57 TCGA-AY-A71X-01 22 22749586 22749586 T C IGLV7-43 Missense_Mutation p.V37A 0.47 tolerated(0.25) possibly_damaging(0.908) TCGA-AY-A71X-01 22 40697269 40697270 - ACCCAAC TNRC6B Frame_Shift_Ins p.A1354Tfs*46 0.34 TCGA-AY-A71X-01 2 171806762 171806762 A G GORASP2 Missense_Mutation p.S133G 0.46 deleterious(0.01) possibly_damaging(0.533) TCGA-AY-A71X-01 2 179403859 179403859 C T TTN Missense_Mutation p.E32935K 0.73 TCGA-AY-A71X-01 2 179598566 179598566 T G TTN Missense_Mutation p.T5184P 0.71 TCGA-AY-A71X-01 2 179623779 179623779 C A TTN Missense_Mutation p.G3412V 0.80 TCGA-AY-A71X-01 2 200137038 200137038 C A SATB2 Nonsense_Mutation p.E700* 0.45 TCGA-AY-A71X-01 2 210895993 210895993 C T KANSL1L Intron 0.58 TCGA-AY-A71X-01 2 219267958 219267958 G A CTDSP1 Missense_Mutation p.A159T 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-AY-A71X-01 2 73188358 73188358 G A SFXN5 Missense_Mutation p.R283C 0.56 tolerated(0.12) probably_damaging(0.912) TCGA-AY-A71X-01 3 122667548 122667557 GGAGAAGACC - SEMA5B Splice_Site p.X96_splice 0.26 TCGA-AY-A71X-01 3 126753021 126753021 G A PLXNA1 3'UTR 0.32 TCGA-AY-A71X-01 3 138433532 138433532 A G PIK3CB Silent p.G360G 0.47 TCGA-AY-A71X-01 3 138666212 138666212 G A C3orf72 Silent p.T2T 0.05 TCGA-AY-A71X-01 3 145803247 145803247 C T PLOD2 Intron 0.45 TCGA-AY-A71X-01 3 179137194 179137194 C T GNB4 Missense_Mutation p.D66N 0.53 deleterious(0.02) benign(0.401) TCGA-AY-A71X-01 3 184009926 184009926 G A ECE2 Missense_Mutation p.R851H 0.38 deleterious(0) probably_damaging(1) TCGA-AY-A71X-01 3 185882739 185882739 C A DGKG Missense_Mutation p.G722C 0.42 deleterious(0) probably_damaging(1) TCGA-AY-A71X-01 3 49044943 49044943 G T WDR6 Missense_Mutation p.V57L 0.44 tolerated(0.45) benign(0.064) TCGA-AY-A71X-01 3 49053238 49053238 C T DALRD3 Missense_Mutation p.G504E 0.39 deleterious(0.03) probably_damaging(0.927) TCGA-AY-A71X-01 4 122853842 122853842 C T TRPC3 Missense_Mutation p.V191I 0.52 deleterious(0) probably_damaging(0.971) TCGA-AY-A71X-01 4 13383174 13383174 G C RAB28 Missense_Mutation p.R146G 0.02 deleterious(0.05) benign(0.142) TCGA-AY-A71X-01 4 1388644 1388644 C T CRIPAK Silent p.P115P 0.14 TCGA-AY-A71X-01 4 154504732 154504732 C T KIAA0922 Missense_Mutation p.S323L 0.46 deleterious(0.02) benign(0.025) TCGA-AY-A71X-01 4 20530586 20530586 C T SLIT2 Nonsense_Mutation p.R493* 0.37 TCGA-AY-A71X-01 4 3129206 3129206 G A HTT Missense_Mutation p.V540I 0.45 benign(0.009) TCGA-AY-A71X-01 4 47597788 47597788 C T CORIN Missense_Mutation p.V1027I 0.37 tolerated(0.48) benign(0.005) TCGA-AY-A71X-01 5 13824331 13824331 G A DNAH5 Missense_Mutation p.R2186W 0.46 possibly_damaging(0.689) TCGA-AY-A71X-01 5 140263778 140263778 C T PCDHA13 Missense_Mutation p.A642V 0.57 deleterious_low_confidence(0.05) benign(0.015) TCGA-AY-A71X-01 5 150911205 150911205 C T FAT2 Missense_Mutation p.G3252S 0.44 benign(0.023) TCGA-AY-A71X-01 5 179263542 179263542 C T SQSTM1 Silent p.I424I 0.07 TCGA-AY-A71X-01 5 482776 482776 G A SLC9A3 Missense_Mutation p.R415C 0.44 deleterious(0) probably_damaging(0.992) TCGA-AY-A71X-01 5 98115384 98115385 TG - RGMB Frame_Shift_Del p.E121Vfs*34 0.45 TCGA-AY-A71X-01 6 153075377 153075377 C A VIP Missense_Mutation p.Q62K 0.03 tolerated(0.26) benign(0.024) TCGA-AY-A71X-01 6 153296531 153296531 G C FBXO5 Missense_Mutation p.T110S 0.45 tolerated(0.54) benign(0.101) TCGA-AY-A71X-01 6 169648998 169648998 G A THBS2 Silent p.G41G 0.57 TCGA-AY-A71X-01 6 32020484 32020484 C A TNXB Silent p.G3024G 0.53 TCGA-AY-A71X-01 6 44121830 44121830 A G TMEM63B Missense_Mutation p.M711V 0.43 tolerated(0.06) benign(0.063) TCGA-AY-A71X-01 6 56033093 56033093 C T COL21A1 Silent p.T343T 0.42 TCGA-AY-A71X-01 6 90371169 90371169 G A MDN1 Silent p.T4898T 0.41 TCGA-AY-A71X-01 7 20824970 20824970 C T SP8 Missense_Mutation p.G156S 0.08 tolerated(0.76) benign(0.007) TCGA-AY-A71X-01 7 65223290 65223290 G A SNORA22 3'Flank 0.31 TCGA-AY-A71X-01 8 139697474 139697474 C T COL22A1 Missense_Mutation p.G982R 0.48 unknown(0) TCGA-AY-A71X-01 8 27394337 27394337 C T EPHX2 Missense_Mutation p.R403W 0.12 deleterious(0) probably_damaging(0.995) TCGA-AY-A71X-01 8 33369777 33369777 G A TTI2 Silent p.L119L 0.42 TCGA-AY-A71X-01 9 136568098 136568098 G A SARDH Silent p.Y536Y 0.51 TCGA-AY-A71X-01 9 138011986 138011986 G A OLFM1 Missense_Mutation p.V456M 0.17 deleterious(0) benign(0.351) TCGA-AY-A71X-01 9 35736406 35736406 C T CREB3 Missense_Mutation p.R267C 0.47 deleterious(0) probably_damaging(1) TCGA-AY-A71X-01 9 75778440 75778440 G A ANXA1 Missense_Mutation p.D202N 0.45 deleterious(0) probably_damaging(0.998) TCGA-AY-A71X-01 X 2994677 2994677 G A ARSF Missense_Mutation p.A84T 0.42 deleterious(0) probably_damaging(0.987) TCGA-AY-A71X-01 X 30326682 30326682 G A NR0B1 Missense_Mutation p.R267C 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-AY-A71X-01 X 48336420 48336420 G A FTSJ1 5'UTR 0.35 TCGA-AY-A71X-01 X 67938188 67938188 G A STARD8 Missense_Mutation p.A478T 0.42 tolerated_low_confidence(0.22) benign(0.009) TCGA-AY-A71X-01 X 69665121 69665121 C T DLG3 Missense_Mutation p.R24C 0.37 deleterious_low_confidence(0.02) benign(0.237) TCGA-AY-A71X-01 X 70367880 70367880 C T NLGN3 Missense_Mutation p.S94L 0.52 tolerated(0.14) possibly_damaging(0.763) TCGA-AY-A8YK-01 10 12237834 12237834 G C NUDT5 5'UTR 0.38 TCGA-AY-A8YK-01 10 129207651 129207651 G C DOCK1 Missense_Mutation p.V1426L 0.19 tolerated(1) benign(0.044) TCGA-AY-A8YK-01 10 16941092 16941092 G A CUBN Missense_Mutation p.T2834M 0.20 tolerated(0.06) probably_damaging(0.932) TCGA-AY-A8YK-01 10 26462622 26462622 T C MYO3A Silent p.N1143N 0.05 TCGA-AY-A8YK-01 10 50944105 50944105 C T OGDHL Missense_Mutation p.R958H 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-AY-A8YK-01 10 51465467 51465467 G T AGAP7 Missense_Mutation p.T330K 0.17 tolerated(0.09) benign(0.102) TCGA-AY-A8YK-01 10 87628861 87628861 G A GRID1 Missense_Mutation p.P286L 0.43 tolerated(0.12) probably_damaging(1) TCGA-AY-A8YK-01 10 91066614 91066614 C G IFIT2 Missense_Mutation p.L301V 0.17 tolerated(0.27) benign(0.002) TCGA-AY-A8YK-01 11 100863783 100863783 G C TMEM133 3'UTR 0.29 TCGA-AY-A8YK-01 11 2291583 2291583 C A ASCL2 5'UTR 0.12 TCGA-AY-A8YK-01 11 5809923 5809923 T C OR52N1 Missense_Mutation p.T42A 0.36 tolerated(0.09) benign(0.002) TCGA-AY-A8YK-01 11 64124705 64124705 C T CCDC88B 3'UTR 0.36 TCGA-AY-A8YK-01 11 72945733 72945733 C T P2RY2 Missense_Mutation p.R177C 0.19 deleterious(0.01) possibly_damaging(0.849) TCGA-AY-A8YK-01 12 114793648 114793648 G T TBX5 Missense_Mutation p.Q416K 0.12 deleterious(0.01) benign(0.11) TCGA-AY-A8YK-01 12 122079531 122079531 C A ORAI1 Silent p.P298P 0.12 TCGA-AY-A8YK-01 12 20766431 20766431 C A PDE3A Missense_Mutation p.L356I 0.21 deleterious(0.04) probably_damaging(0.947) TCGA-AY-A8YK-01 12 48191175 48191175 C T HDAC7 Missense_Mutation p.R190H 0.37 deleterious(0) probably_damaging(0.999) TCGA-AY-A8YK-01 12 49318391 49318391 G C FKBP11 Missense_Mutation p.T79S 0.27 tolerated(1) benign(0.003) TCGA-AY-A8YK-01 12 49949423 49949423 C T KCNH3 Silent p.S719S 0.20 TCGA-AY-A8YK-01 12 52647467 52647467 C A KRT7 3'Flank 0.14 TCGA-AY-A8YK-01 12 54932753 54932753 G A NCKAP1L Missense_Mutation p.R1090H 0.35 tolerated(0.5) benign(0.006) TCGA-AY-A8YK-01 13 109793412 109793412 C T MYO16 Missense_Mutation p.P1596S 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.545) TCGA-AY-A8YK-01 13 58207198 58207198 G A PCDH17 Missense_Mutation p.R173H 0.06 deleterious(0.03) probably_damaging(0.99) TCGA-AY-A8YK-01 13 70275823 70275823 A T KLHL1 3'UTR 0.32 TCGA-AY-A8YK-01 13 94197553 94197553 C A GPC6 Nonsense_Mutation p.C66* 0.15 TCGA-AY-A8YK-01 15 83518395 83518396 - A HOMER2 3'UTR 0.29 TCGA-AY-A8YK-01 15 88690595 88690595 C T NTRK3 Silent p.Q145Q 0.26 TCGA-AY-A8YK-01 16 27503771 27503771 G C GTF3C1 Missense_Mutation p.N1013K 0.45 tolerated(0.14) possibly_damaging(0.735) TCGA-AY-A8YK-01 16 615188 615188 G A C16orf11 Missense_Mutation p.A533T 0.37 tolerated(0.37) benign(0.003) TCGA-AY-A8YK-01 16 71602654 71602654 C T TAT Missense_Mutation p.R395Q 0.50 tolerated(0.38) benign(0.003) TCGA-AY-A8YK-01 16 726300 726300 C T RHBDL1 Missense_Mutation p.R67C 0.27 deleterious_low_confidence(0.04) benign(0.001) TCGA-AY-A8YK-01 17 38910715 38910715 G A KRT25 Silent p.I145I 0.25 TCGA-AY-A8YK-01 17 66038226 66038226 C T KPNA2 Missense_Mutation p.P110S 0.21 deleterious(0.01) possibly_damaging(0.527) TCGA-AY-A8YK-01 17 6704171 6704171 G A TEKT1 Missense_Mutation p.T315M 0.76 deleterious(0) probably_damaging(0.998) TCGA-AY-A8YK-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.62 TCGA-AY-A8YK-01 17 77926499 77926499 G A TBC1D16 Missense_Mutation p.R300C 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-AY-A8YK-01 17 79860617 79860617 C T NPB Missense_Mutation p.A124V 0.56 deleterious(0.03) benign(0.142) TCGA-AY-A8YK-01 18 31251822 31251822 C A ASXL3 Missense_Mutation p.S236Y 0.27 probably_damaging(0.999) TCGA-AY-A8YK-01 18 44435360 44435360 T G PIAS2 Missense_Mutation p.N225T 0.18 tolerated(0.29) benign(0.002) TCGA-AY-A8YK-01 18 55816711 55816711 C G NEDD4L Intron 0.16 TCGA-AY-A8YK-01 19 3976311 3976311 G A EEF2 3'UTR 0.27 TCGA-AY-A8YK-01 19 41025502 41025502 C A SPTBN4 Missense_Mutation p.A1033E 0.12 deleterious(0.01) probably_damaging(0.949) TCGA-AY-A8YK-01 19 46520306 46520306 T A CCDC61 Missense_Mutation p.F430Y 0.53 tolerated(0.26) possibly_damaging(0.682) TCGA-AY-A8YK-01 19 55899331 55899331 C A RPL28 Missense_Mutation p.T80N 0.27 deleterious(0.03) possibly_damaging(0.824) TCGA-AY-A8YK-01 19 56671372 56671372 C T ZNF444 Silent p.R262R 0.33 TCGA-AY-A8YK-01 19 58095693 58095693 G A ZIK1 5'UTR 0.41 TCGA-AY-A8YK-01 19 9090681 9090681 G T MUC16 Missense_Mutation p.S378R 0.09 unknown(0) TCGA-AY-A8YK-01 1 158615140 158615140 G T SPTA1 Silent p.T1344T 0.19 TCGA-AY-A8YK-01 1 22200919 22200919 G A HSPG2 Silent p.Y1212Y 0.23 TCGA-AY-A8YK-01 1 66067528 66067528 G A LEPR Missense_Mutation p.V430I 0.21 tolerated(0.06) possibly_damaging(0.893) TCGA-AY-A8YK-01 1 77685010 77685010 G T PIGK Silent p.A26A 0.19 TCGA-AY-A8YK-01 1 84412859 84412859 G A TTLL7 Missense_Mutation p.R152W 0.38 deleterious(0) probably_damaging(0.979) TCGA-AY-A8YK-01 20 3451969 3451969 T C ATRN Missense_Mutation p.L72P 0.06 tolerated(0.1) unknown(0) TCGA-AY-A8YK-01 20 50048791 50048791 G A NFATC2 Silent p.G845G 0.17 TCGA-AY-A8YK-01 20 62197019 62197019 C T HELZ2 Silent p.T1052T 0.13 TCGA-AY-A8YK-01 21 45196169 45196169 A T CSTB 5'UTR 0.50 TCGA-AY-A8YK-01 21 47536686 47536686 G A COL6A2 Silent p.G319G 0.34 TCGA-AY-A8YK-01 22 41077269 41077269 C T MCHR1 Silent p.I202I 0.11 TCGA-AY-A8YK-01 2 105924688 105924688 C T TGFBRAP1 Missense_Mutation p.R24H 0.54 tolerated(0.12) benign(0.003) TCGA-AY-A8YK-01 2 145161520 145161520 T A ZEB2 Missense_Mutation p.E257V 0.19 deleterious(0) probably_damaging(0.999) TCGA-AY-A8YK-01 2 149227675 149227675 G A MBD5 Silent p.P721P 0.24 TCGA-AY-A8YK-01 2 233322546 233322546 G A ALPI Silent p.A275A 0.55 TCGA-AY-A8YK-01 2 29375593 29375593 G A CLIP4 Missense_Mutation p.R355Q 0.21 tolerated(0.2) benign(0.004) TCGA-AY-A8YK-01 2 51254923 51254923 G A NRXN1 Silent p.R163R 0.42 TCGA-AY-A8YK-01 3 10980090 10980090 C T SLC6A11 3'UTR 0.19 TCGA-AY-A8YK-01 3 112299421 112299421 T C SLC35A5 Missense_Mutation p.S153P 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-AY-A8YK-01 3 156395692 156395692 T G TIPARP Missense_Mutation p.L69R 0.24 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-AY-A8YK-01 3 52822082 52822082 G A ITIH1 Missense_Mutation p.V669M 0.31 deleterious(0) probably_damaging(0.965) TCGA-AY-A8YK-01 3 77695579 77695579 T A ROBO2 3'UTR 0.25 TCGA-AY-A8YK-01 3 97454919 97454919 C A EPHA6 Silent p.R1029R 0.21 TCGA-AY-A8YK-01 4 103505853 103505853 C A NFKB1 Missense_Mutation p.F314L 0.52 deleterious(0.03) probably_damaging(0.988) TCGA-AY-A8YK-01 4 176733409 176733409 C T GPM6A Intron 0.37 TCGA-AY-A8YK-01 4 44624457 44624457 G T YIPF7 Missense_Mutation p.L273I 0.15 tolerated(0.14) possibly_damaging(0.772) TCGA-AY-A8YK-01 4 54011508 54011508 T A SCFD2 Missense_Mutation p.K518I 0.11 tolerated(0.07) benign(0.059) TCGA-AY-A8YK-01 5 112116485 112116485 A G APC Splice_Site p.X178_splice 0.20 TCGA-AY-A8YK-01 5 112174394 112174394 C T APC Nonsense_Mutation p.Q1035* 0.31 TCGA-AY-A8YK-01 5 135692425 135692425 C T TRPC7 Silent p.S217S 0.25 TCGA-AY-A8YK-01 5 137762925 137762925 G A KDM3B Missense_Mutation p.R1517Q 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-AY-A8YK-01 5 140264180 140264180 T C PCDHA13 Missense_Mutation p.L776P 0.18 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-AY-A8YK-01 5 170145799 170145799 C A KCNIP1 Nonsense_Mutation p.C44* 0.19 TCGA-AY-A8YK-01 6 152640149 152640149 A C SYNE1 Missense_Mutation p.I5413S 0.20 possibly_damaging(0.872) TCGA-AY-A8YK-01 6 155465827 155465827 G T TIAM2 Missense_Mutation p.S573I 0.31 deleterious(0) probably_damaging(0.962) TCGA-AY-A8YK-01 6 166733602 166733602 A T SFT2D1 3'UTR 0.39 TCGA-AY-A8YK-01 7 111629088 111629088 C T DOCK4 Missense_Mutation p.R149Q 0.25 deleterious(0.01) possibly_damaging(0.517) TCGA-AY-A8YK-01 7 117251862 117251862 G T CFTR Nonsense_Mutation p.G1123* 0.21 TCGA-AY-A8YK-01 7 42012198 42012198 C A GLI3 Missense_Mutation p.C614F 0.17 deleterious(0) probably_damaging(1) TCGA-AY-A8YK-01 8 113301717 113301717 C T CSMD3 Missense_Mutation p.E3009K 0.56 deleterious(0.04) benign(0.291) TCGA-AY-A8YK-01 8 142190927 142190927 C T DENND3 Missense_Mutation p.A893V 0.63 tolerated(0.06) benign(0.406) TCGA-AY-A8YK-01 8 52321691 52321691 C T PXDNL Silent p.P831P 0.37 TCGA-AY-A8YK-01 8 75227656 75227656 G A JPH1 Silent p.F193F 0.17 TCGA-AY-A8YK-01 9 138515828 138515828 A G GLT6D1 3'UTR 0.37 TCGA-AY-A8YK-01 9 140242537 140242537 G A EXD3 Missense_Mutation p.R662C 0.22 deleterious(0) probably_damaging(0.95) TCGA-AY-A8YK-01 9 73152239 73152239 G A TRPM3 Missense_Mutation p.R1252W 0.15 deleterious(0) probably_damaging(0.986) TCGA-AY-A8YK-01 X 105011032 105011032 T G IL1RAPL2 Missense_Mutation p.L480R 0.22 deleterious(0.02) probably_damaging(0.936) TCGA-AY-A8YK-01 X 110002922 110002922 G A CHRDL1 Missense_Mutation p.H90Y 0.81 tolerated(1) benign(0.05) TCGA-AY-A8YK-01 X 50051913 50051913 G A CCNB3 Silent p.S248S 0.16 TCGA-AY-A8YK-01 Y 4924836 4924836 T G PCDH11Y 5'UTR 0.77 TCGA-AZ-4308-01 10 115381755 115381755 A G NRAP Missense_Mutation p.V881A 0.36 tolerated(0.31) benign(0.002) TCGA-AZ-4308-01 10 116075406 116075406 G A AFAP1L2 Silent p.D175D 0.36 TCGA-AZ-4308-01 10 13364846 13364846 G A SEPHS1 Missense_Mutation p.P318L 0.31 deleterious(0.02) possibly_damaging(0.768) TCGA-AZ-4308-01 10 15726089 15726089 G A ITGA8 Missense_Mutation p.P161L 0.19 tolerated(0.32) benign(0.001) TCGA-AZ-4308-01 10 56138645 56138645 G A PCDH15 Missense_Mutation p.T72I 0.21 deleterious(0) possibly_damaging(0.878) TCGA-AZ-4308-01 10 70863653 70863653 G A SRGN Missense_Mutation p.R85H 0.30 deleterious(0.02) possibly_damaging(0.487) TCGA-AZ-4308-01 10 7604865 7604865 G A ITIH5 3'UTR 0.22 TCGA-AZ-4308-01 10 89711881 89711881 A G PTEN Missense_Mutation p.T167A 0.35 deleterious(0) possibly_damaging(0.9) TCGA-AZ-4308-01 11 105789601 105789601 A G GRIA4 Missense_Mutation p.D478G 0.28 deleterious(0.04) benign(0.434) TCGA-AZ-4308-01 11 105948523 105948523 G A AASDHPPT Missense_Mutation p.S29N 0.30 tolerated(0.07) benign(0.001) TCGA-AZ-4308-01 11 118374702 118374702 C T KMT2A Nonsense_Mutation p.R2699* 0.37 TCGA-AZ-4308-01 11 407078 407078 A G SIGIRR Missense_Mutation p.C238R 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-AZ-4308-01 11 51412325 51412325 G T OR4A5 Missense_Mutation p.A24E 0.40 deleterious_low_confidence(0.02) benign(0.078) TCGA-AZ-4308-01 11 57983110 57983110 A G OR1S1 Missense_Mutation p.I298M 0.28 tolerated(0.2) benign(0) TCGA-AZ-4308-01 11 58275356 58275356 C A OR5B21 Missense_Mutation p.V75L 0.28 deleterious_low_confidence(0) benign(0.133) TCGA-AZ-4308-01 11 65822589 65822589 C T SF3B2 Missense_Mutation p.P101S 0.39 tolerated_low_confidence(0.3) possibly_damaging(0.857) TCGA-AZ-4308-01 11 76751268 76751268 G A B3GNT6 Missense_Mutation p.V225M 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4308-01 11 89537505 89537505 C T TRIM49 Missense_Mutation p.D45N 0.26 tolerated(0.08) benign(0.208) TCGA-AZ-4308-01 12 121947618 121947618 G A KDM2B Nonsense_Mutation p.R467* 0.35 TCGA-AZ-4308-01 12 40753223 40753223 C A LRRK2 Silent p.L2335L 0.29 TCGA-AZ-4308-01 12 54686847 54686847 C T NFE2 Missense_Mutation p.D145N 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-AZ-4308-01 12 66546137 66546137 A G TMBIM4 Missense_Mutation p.F76L 0.40 tolerated(0.17) benign(0.002) TCGA-AZ-4308-01 12 6839658 6839658 G A COPS7A Silent p.Q207Q 0.27 TCGA-AZ-4308-01 12 7249593 7249593 G T C1RL Nonsense_Mutation p.Y286* 0.44 TCGA-AZ-4308-01 13 41639360 41639360 G T WBP4 Missense_Mutation p.A67S 0.19 deleterious(0.01) possibly_damaging(0.81) TCGA-AZ-4308-01 13 43930150 43930150 C T ENOX1 Missense_Mutation p.R243H 0.21 deleterious(0.02) possibly_damaging(0.726) TCGA-AZ-4308-01 13 67802257 67802257 C G PCDH9 Missense_Mutation p.E106Q 0.13 deleterious(0.04) probably_damaging(0.952) TCGA-AZ-4308-01 14 102910058 102910058 C T TECPR2 Missense_Mutation p.R943W 0.53 deleterious(0.01) benign(0.043) TCGA-AZ-4308-01 14 105409652 105409652 T C AHNAK2 Missense_Mutation p.S4046G 0.59 benign(0.001) TCGA-AZ-4308-01 14 60976677 60976677 A T SIX6 Silent p.A187A 0.47 TCGA-AZ-4308-01 14 63453887 63453887 C T KCNH5 Missense_Mutation p.R151Q 0.65 tolerated(0.06) possibly_damaging(0.616) TCGA-AZ-4308-01 16 2571043 2571043 C T AMDHD2 Silent p.L93L 0.46 TCGA-AZ-4308-01 16 48258239 48258239 T C ABCC11 Missense_Mutation p.D166G 0.37 deleterious(0.04) benign(0.071) TCGA-AZ-4308-01 16 49764857 49764857 G A ZNF423 Silent p.C34C 0.36 TCGA-AZ-4308-01 16 57075978 57075978 G A NLRC5 Splice_Site p.X1038_splice 0.23 TCGA-AZ-4308-01 16 88786562 88786562 C T PIEZO1 Missense_Mutation p.V2027M 0.09 tolerated(0.13) probably_damaging(0.981) TCGA-AZ-4308-01 17 45351805 45351805 C T ITGB3 Nonsense_Mutation p.R34* 0.25 TCGA-AZ-4308-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.71 deleterious(0) probably_damaging(0.997) TCGA-AZ-4308-01 17 7700581 7700581 T C DNAH2 Splice_Site p.X2650_splice 0.32 TCGA-AZ-4308-01 19 12187174 12187174 C T ZNF844 Silent p.L413L 0.27 TCGA-AZ-4308-01 19 1818564 1818564 G T REXO1 Missense_Mutation p.T978N 0.37 deleterious(0.02) benign(0.018) TCGA-AZ-4308-01 19 38189702 38189702 T C ZNF607 Missense_Mutation p.T444A 0.31 deleterious(0.03) benign(0.252) TCGA-AZ-4308-01 19 4538256 4538256 T C LRG1 Missense_Mutation p.K247R 0.35 tolerated(0.79) benign(0.009) TCGA-AZ-4308-01 19 50000542 50000542 A G RPS11 Missense_Mutation p.Y36C 0.29 deleterious(0) possibly_damaging(0.797) TCGA-AZ-4308-01 1 147091036 147091036 C T BCL9 Missense_Mutation p.R359W 0.38 deleterious(0) probably_damaging(0.997) TCGA-AZ-4308-01 1 166958720 166958720 C T MAEL Missense_Mutation p.A44V 0.22 tolerated(0.06) benign(0.353) TCGA-AZ-4308-01 1 20009808 20009808 G A TMCO4 Missense_Mutation p.R544C 0.27 tolerated(0.06) benign(0.001) TCGA-AZ-4308-01 1 22205148 22205148 T A HSPG2 Missense_Mutation p.D827V 0.32 probably_damaging(0.948) TCGA-AZ-4308-01 1 227172602 227172602 C T ADCK3 Missense_Mutation p.T511M 0.28 deleterious(0) possibly_damaging(0.677) TCGA-AZ-4308-01 1 40148335 40148335 C T HPCAL4 Missense_Mutation p.R150H 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4308-01 1 43738750 43738750 C T TMEM125 Silent p.L119L 0.44 TCGA-AZ-4308-01 1 6679923 6679923 G A PHF13 Missense_Mutation p.D68N 0.30 deleterious(0.05) probably_damaging(0.997) TCGA-AZ-4308-01 1 89573960 89573960 A G GBP2 Silent p.L558L 0.15 TCGA-AZ-4308-01 21 22910251 22910251 A G NCAM2 Silent p.Q829Q 0.31 TCGA-AZ-4308-01 21 31538338 31538338 G A CLDN17 Missense_Mutation p.P200S 0.23 deleterious(0.03) benign(0.045) TCGA-AZ-4308-01 22 18064152 18064152 G T SLC25A18 Missense_Mutation p.A58S 0.22 tolerated(1) benign(0.024) TCGA-AZ-4308-01 22 36714313 36714313 A T MYH9 Missense_Mutation p.I389N 0.19 probably_damaging(0.997) TCGA-AZ-4308-01 22 36714326 36714326 A C MYH9 Missense_Mutation p.F385V 0.18 possibly_damaging(0.489) TCGA-AZ-4308-01 22 42910220 42910220 G A RRP7A Missense_Mutation p.R217W 0.15 deleterious(0.03) possibly_damaging(0.801) TCGA-AZ-4308-01 22 50553670 50553670 C T MOV10L1 Silent p.D418D 0.31 TCGA-AZ-4308-01 2 143913090 143913090 G A ARHGAP15 Missense_Mutation p.V11M 0.51 tolerated(0.16) benign(0.001) TCGA-AZ-4308-01 2 185802564 185802564 G A ZNF804A Missense_Mutation p.R814Q 0.34 deleterious(0) probably_damaging(0.953) TCGA-AZ-4308-01 2 189904043 189904043 G A COL5A2 Missense_Mutation p.R1294C 0.53 unknown(0) TCGA-AZ-4308-01 2 238647952 238647952 G T LRRFIP1 Intron 0.49 TCGA-AZ-4308-01 2 69573087 69573087 C T GFPT1 Missense_Mutation p.E352K 0.33 deleterious(0) possibly_damaging(0.46) TCGA-AZ-4308-01 3 14861803 14861803 G A FGD5 Missense_Mutation p.A409T 0.26 tolerated_low_confidence(0.27) benign(0.001) TCGA-AZ-4308-01 3 157839994 157839994 C A RSRC1 Missense_Mutation p.T34K 0.35 deleterious_low_confidence(0) unknown(0) TCGA-AZ-4308-01 3 186953629 186953629 C T MASP1 Missense_Mutation p.R677H 0.41 tolerated(0.27) benign(0.013) TCGA-AZ-4308-01 3 45637216 45637216 A G LIMD1 Missense_Mutation p.N282S 0.38 deleterious(0.02) possibly_damaging(0.501) TCGA-AZ-4308-01 3 52543959 52543959 C T STAB1 Silent p.A807A 0.27 TCGA-AZ-4308-01 4 135121074 135121074 G A PABPC4L Silent p.A425A 0.62 TCGA-AZ-4308-01 4 1807872 1807872 A T FGFR3 Missense_Mutation p.N646I 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-4308-01 4 5527065 5527065 C A C4orf6 Missense_Mutation p.T3N 0.34 possibly_damaging(0.607) TCGA-AZ-4308-01 5 112174732 112174732 C G APC Nonsense_Mutation p.Y1147* 0.31 TCGA-AZ-4308-01 5 139218292 139218292 G A PSD2 Missense_Mutation p.A635T 0.39 deleterious(0) probably_damaging(0.963) TCGA-AZ-4308-01 5 140590635 140590635 C A PCDHB12 Missense_Mutation p.A719E 0.38 tolerated_low_confidence(0.12) possibly_damaging(0.614) TCGA-AZ-4308-01 5 140751223 140751223 C T PCDHGB3 Missense_Mutation p.T421M 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4308-01 5 140784658 140784658 C G PCDHGA9 Silent p.A713A 0.53 TCGA-AZ-4308-01 5 31486615 31486615 C A DROSHA Nonsense_Mutation p.E633* 0.36 TCGA-AZ-4308-01 5 82817751 82817751 C T VCAN Missense_Mutation p.T1209I 0.39 deleterious(0.05) benign(0.01) TCGA-AZ-4308-01 5 83239193 83239193 A T EDIL3 3'UTR 0.24 TCGA-AZ-4308-01 6 118886769 118886769 C T CEP85L Missense_Mutation p.E318K 0.28 deleterious(0.03) possibly_damaging(0.628) TCGA-AZ-4308-01 6 155632420 155632420 C T TFB1M Missense_Mutation p.G63S 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4308-01 7 16460825 16460825 C T ISPD Silent p.G41G 0.14 TCGA-AZ-4308-01 7 48431694 48431694 C T ABCA13 Missense_Mutation p.A3944V 0.23 possibly_damaging(0.739) TCGA-AZ-4308-01 7 94040231 94040231 G A COL1A2 Missense_Mutation p.A410T 0.37 probably_damaging(0.916) TCGA-AZ-4308-01 8 145057913 145057913 C T PARP10 Missense_Mutation p.R615Q 0.45 tolerated(0.58) benign(0) TCGA-AZ-4308-01 8 71619375 71619375 G A XKR9 Silent p.A160A 0.25 TCGA-AZ-4308-01 9 123580209 123580209 G A PSMD5 Missense_Mutation p.T497M 0.43 deleterious(0.03) probably_damaging(0.91) TCGA-AZ-4308-01 9 137716565 137716565 C T COL5A1 Silent p.D1606D 0.07 TCGA-AZ-4308-01 9 32630135 32630135 G T TAF1L Missense_Mutation p.H1815N 0.05 tolerated_low_confidence(0.09) benign(0) TCGA-AZ-4308-01 9 39171462 39171462 G A CNTNAP3 Nonsense_Mutation p.R413* 0.30 TCGA-AZ-4308-01 9 77354770 77354770 C T TRPM6 Missense_Mutation p.V1786I 0.38 tolerated(1) benign(0.009) TCGA-AZ-4308-01 9 97081928 97081928 C A NUTM2F Missense_Mutation p.E484D 0.37 deleterious(0.01) benign(0.143) TCGA-AZ-4308-01 X 140984292 140984292 C A MAGEC3 Intron 0.68 TCGA-AZ-4308-01 X 99942032 99942032 C T SYTL4 Intron 0.46 TCGA-AZ-4315-01 10 100013439 100013439 G A LOXL4 Missense_Mutation p.A569V 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 10 100481431 100481431 G T HPSE2 Silent p.V313V 0.42 TCGA-AZ-4315-01 10 100995386 100995386 C A HPSE2 Missense_Mutation p.K58N 0.19 tolerated(0.1) benign(0.223) TCGA-AZ-4315-01 10 101089247 101089247 C T CNNM1 Missense_Mutation p.P35S 0.31 deleterious_low_confidence(0.05) probably_damaging(0.968) TCGA-AZ-4315-01 10 101124718 101124718 A G CNNM1 Missense_Mutation p.D712G 0.29 tolerated(0.25) benign(0.034) TCGA-AZ-4315-01 10 101292781 101292781 C T NKX2-3 5'UTR 0.42 TCGA-AZ-4315-01 10 101373553 101373553 G A SLC25A28 Silent p.G140G 0.43 TCGA-AZ-4315-01 10 101590175 101590175 G A ABCC2 Missense_Mutation p.R911Q 0.33 tolerated(0.18) benign(0.02) TCGA-AZ-4315-01 10 101646058 101646058 G A DNMBP Missense_Mutation p.S1206L 0.39 deleterious(0.03) possibly_damaging(0.523) TCGA-AZ-4315-01 10 101825039 101825039 G A CPN1 Missense_Mutation p.A222V 0.23 tolerated(0.72) probably_damaging(0.926) TCGA-AZ-4315-01 10 102003464 102003464 G A CWF19L1 Silent p.I345I 0.35 TCGA-AZ-4315-01 10 102056015 102056015 C T PKD2L1 Missense_Mutation p.R407Q 0.32 deleterious(0.03) probably_damaging(1) TCGA-AZ-4315-01 10 103296370 103296370 C T BTRC Nonsense_Mutation p.R513* 0.28 TCGA-AZ-4315-01 10 103361008 103361008 C T DPCD Nonsense_Mutation p.R107* 0.25 TCGA-AZ-4315-01 10 103557766 103557766 G A MGEA5 Missense_Mutation p.S652F 0.35 deleterious(0) probably_damaging(0.931) TCGA-AZ-4315-01 10 103558938 103558938 C T MGEA5 Silent p.A490A 0.31 TCGA-AZ-4315-01 10 103607201 103607201 G A C10orf76 3'UTR 0.25 TCGA-AZ-4315-01 10 103899834 103899834 T C PPRC1 Silent p.A523A 0.37 TCGA-AZ-4315-01 10 103900541 103900541 G A PPRC1 Missense_Mutation p.R759Q 0.35 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AZ-4315-01 10 103988931 103988931 C A ELOVL3 Silent p.T245T 0.35 TCGA-AZ-4315-01 10 104129946 104129946 A C GBF1 Missense_Mutation p.K1118Q 0.35 tolerated(1) benign(0.008) TCGA-AZ-4315-01 10 104172267 104172267 G A PSD Missense_Mutation p.A540V 0.32 deleterious(0.04) probably_damaging(0.989) TCGA-AZ-4315-01 10 104176777 104176777 G A PSD Missense_Mutation p.R7C 0.20 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AZ-4315-01 10 104592822 104592822 G T CYP17A1 Silent p.I299I 0.27 TCGA-AZ-4315-01 10 104595063 104595063 C T CYP17A1 Silent p.A128A 0.33 TCGA-AZ-4315-01 10 104851360 104851360 T C NT5C2 Missense_Mutation p.E391G 0.34 deleterious(0.02) benign(0.43) TCGA-AZ-4315-01 10 105007088 105007088 A G RPEL1 3'UTR 0.36 TCGA-AZ-4315-01 10 105048381 105048381 G T INA Missense_Mutation p.E485D 0.25 tolerated(0.08) benign(0.004) TCGA-AZ-4315-01 10 105203066 105203066 C A PDCD11 Silent p.I1700I 0.19 TCGA-AZ-4315-01 10 105209501 105209501 C T CALHM2 Silent p.L66L 0.33 TCGA-AZ-4315-01 10 105233172 105233172 T G CALHM3 Missense_Mutation p.E278A 0.26 tolerated(0.12) benign(0.001) TCGA-AZ-4315-01 10 105762013 105762013 T A SLK Silent p.I359I 0.44 TCGA-AZ-4315-01 10 105762958 105762958 A C SLK Missense_Mutation p.K674N 0.29 tolerated(0.28) benign(0.028) TCGA-AZ-4315-01 10 105893416 105893416 C - WDR96 Frame_Shift_Del p.D1520Ifs*15 0.24 TCGA-AZ-4315-01 10 106118377 106118377 G T CCDC147 Missense_Mutation p.K96N 0.35 tolerated(0.06) possibly_damaging(0.781) TCGA-AZ-4315-01 10 107023201 107023201 A G SORCS3 3'UTR 0.34 TCGA-AZ-4315-01 10 108439082 108439082 C A SORCS1 Missense_Mutation p.G558C 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 108459130 108459130 C T SORCS1 Missense_Mutation p.D419N 0.37 tolerated(0.07) benign(0.147) TCGA-AZ-4315-01 10 111876089 111876089 T G ADD3 Missense_Mutation p.L136R 0.32 deleterious(0) possibly_damaging(0.689) TCGA-AZ-4315-01 10 112039784 112039784 G A MXI1 Missense_Mutation p.R222Q 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-4315-01 10 112266761 112266761 C T DUSP5 Silent p.F199F 0.37 TCGA-AZ-4315-01 10 112269969 112269969 G A DUSP5 Missense_Mutation p.E314K 0.31 deleterious(0.02) possibly_damaging(0.641) TCGA-AZ-4315-01 10 112361731 112361731 G A SMC3 Missense_Mutation p.R967Q 0.25 deleterious(0.01) benign(0.19) TCGA-AZ-4315-01 10 112579926 112579926 A G RBM20 Missense_Mutation p.T883A 0.32 tolerated(0.66) benign(0.002) TCGA-AZ-4315-01 10 112641255 112641255 G A PDCD4 Missense_Mutation p.R103Q 0.27 deleterious(0.05) benign(0.007) TCGA-AZ-4315-01 10 112724416 112724416 G T SHOC2 Missense_Mutation p.E100D 0.29 tolerated(0.17) benign(0.155) TCGA-AZ-4315-01 10 112724477 112724477 G T SHOC2 Nonsense_Mutation p.E121* 0.15 TCGA-AZ-4315-01 10 112760262 112760262 G T SHOC2 Nonsense_Mutation p.E311* 0.36 TCGA-AZ-4315-01 10 114224357 114224357 A G VTI1A Missense_Mutation p.M69V 0.35 tolerated(0.06) possibly_damaging(0.747) TCGA-AZ-4315-01 10 114911553 114911553 C A TCF7L2 Missense_Mutation p.F357L 0.33 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 10 11504741 11504741 T G USP6NL Missense_Mutation p.Y746S 0.42 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-AZ-4315-01 10 115336953 115336953 C A HABP2 Missense_Mutation p.L126I 0.34 tolerated(0.08) benign(0.348) TCGA-AZ-4315-01 10 115489388 115489388 C A CASP7 3'UTR 0.29 TCGA-AZ-4315-01 10 115525042 115525042 G T PLEKHS1 5'UTR 0.38 TCGA-AZ-4315-01 10 115594841 115594841 T C DCLRE1A 3'UTR 0.23 TCGA-AZ-4315-01 10 115922307 115922307 A G C10orf118 Intron 0.32 TCGA-AZ-4315-01 10 116245085 116245085 G A ABLIM1 Intron 0.24 TCGA-AZ-4315-01 10 116247719 116247719 G A ABLIM1 Missense_Mutation p.R347W 0.28 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 10 116605808 116605808 A C FAM160B1 Silent p.R389R 0.35 TCGA-AZ-4315-01 10 116735118 116735118 G T TRUB1 Missense_Mutation p.D344Y 0.38 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-AZ-4315-01 10 116853644 116853644 C T ATRNL1 Silent p.C45C 0.41 TCGA-AZ-4315-01 10 116880013 116880013 A G ATRNL1 Missense_Mutation p.T120A 0.31 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 10 1175357 1175357 A C WDR37 3'UTR 0.29 TCGA-AZ-4315-01 10 117849327 117849327 C A GFRA1 Missense_Mutation p.K374N 0.39 tolerated(0.26) benign(0.14) TCGA-AZ-4315-01 10 117884730 117884730 A G GFRA1 Splice_Site p.X257_splice 0.35 TCGA-AZ-4315-01 10 118202586 118202586 C A PNLIPRP3 Missense_Mutation p.S75Y 0.39 tolerated(0.94) benign(0.064) TCGA-AZ-4315-01 10 118236621 118236621 G A PNLIPRP3 Missense_Mutation p.D454N 0.50 tolerated(0.16) benign(0.033) TCGA-AZ-4315-01 10 118383543 118383543 C A PNLIPRP2 Missense_Mutation p.P46H 0.32 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 10 118396304 118396304 T C PNLIPRP2 Silent p.C315C 0.31 TCGA-AZ-4315-01 10 118969418 118969418 G A KCNK18 Missense_Mutation p.E255K 0.30 deleterious(0) possibly_damaging(0.905) TCGA-AZ-4315-01 10 119013902 119013902 C A SLC18A2 Intron 0.39 TCGA-AZ-4315-01 10 119805636 119805636 G C RAB11FIP2 Silent p.T13T 0.29 TCGA-AZ-4315-01 10 11984690 11984690 C A UPF2 Missense_Mutation p.D1118Y 0.38 deleterious(0) probably_damaging(0.975) TCGA-AZ-4315-01 10 120816474 120816474 C T EIF3A Missense_Mutation p.E686K 0.30 deleterious(0.03) unknown(0) TCGA-AZ-4315-01 10 120829112 120829112 G T EIF3A Missense_Mutation p.P266T 0.33 tolerated(0.13) unknown(0) TCGA-AZ-4315-01 10 120832428 120832428 C T EIF3A Missense_Mutation p.R172H 0.34 tolerated(0.11) unknown(0) TCGA-AZ-4315-01 10 120896251 120896251 G T FAM45A 3'UTR 0.27 TCGA-AZ-4315-01 10 121196214 121196214 A G GRK5 Missense_Mutation p.T264A 0.36 deleterious(0) possibly_damaging(0.741) TCGA-AZ-4315-01 10 12148287 12148287 G A DHTKD1 Missense_Mutation p.E647K 0.36 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 10 121596430 121596430 G A MCMBP Missense_Mutation p.S509L 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 121609010 121609010 G T MCMBP Missense_Mutation p.S218Y 0.28 tolerated(0.07) benign(0.044) TCGA-AZ-4315-01 10 121618633 121618633 G A MCMBP Missense_Mutation p.R69C 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 122668142 122668142 C A WDR11 Missense_Mutation p.L1198I 0.33 tolerated(0.34) benign(0.002) TCGA-AZ-4315-01 10 123503361 123503361 C T ATE1 Missense_Mutation p.R464H 0.31 tolerated(0.22) benign(0.009) TCGA-AZ-4315-01 10 124329717 124329717 T C DMBT1 Missense_Mutation p.V44A 0.35 tolerated_low_confidence(0.93) benign(0.005) TCGA-AZ-4315-01 10 124336217 124336217 G T DMBT1 Missense_Mutation p.D196Y 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 124458915 124458915 A C C10orf120 Missense_Mutation p.F64V 0.27 tolerated(0.05) benign(0.053) TCGA-AZ-4315-01 10 124459132 124459132 G A C10orf120 Missense_Mutation p.R59W 0.33 tolerated(0.09) benign(0) TCGA-AZ-4315-01 10 1245952 1245952 G A ADARB2 Silent p.V606V 0.64 TCGA-AZ-4315-01 10 124596369 124596369 A C CUZD1 Missense_Mutation p.I265M 0.37 deleterious(0.02) possibly_damaging(0.499) TCGA-AZ-4315-01 10 124598705 124598705 G T CUZD1 Silent p.V92V 0.29 TCGA-AZ-4315-01 10 124742346 124742346 A G PSTK Missense_Mutation p.N105S 0.33 tolerated(0.41) benign(0.001) TCGA-AZ-4315-01 10 124813266 124813266 C T ACADSB Silent p.I428I 0.15 TCGA-AZ-4315-01 10 124909493 124909493 G A HMX2 Missense_Mutation p.V226M 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 10 125516776 125516776 C T CPXM2 Missense_Mutation p.E624K 0.26 tolerated(0.34) probably_damaging(0.945) TCGA-AZ-4315-01 10 125771979 125771979 C T CHST15 Silent p.G455G 0.36 TCGA-AZ-4315-01 10 126520030 126520030 G T FAM175B Missense_Mutation p.R259I 0.30 tolerated(0.23) benign(0.015) TCGA-AZ-4315-01 10 126523290 126523290 G A FAM175B Missense_Mutation p.R333Q 0.34 tolerated(0.08) benign(0.213) TCGA-AZ-4315-01 10 126715200 126715200 C T CTBP2 Missense_Mutation p.E377K 0.22 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-AZ-4315-01 10 126715205 126715205 C T CTBP2 Missense_Mutation p.R375Q 0.35 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-AZ-4315-01 10 127431771 127431771 G T EDRF1 Missense_Mutation p.R839I 0.39 deleterious(0) possibly_damaging(0.872) TCGA-AZ-4315-01 10 127434488 127434488 T C EDRF1 Missense_Mutation p.Y935H 0.08 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 10 127548240 127548240 G A DHX32 Missense_Mutation p.R261C 0.31 deleterious(0) possibly_damaging(0.75) TCGA-AZ-4315-01 10 127789794 127789794 T C ADAM12 Missense_Mutation p.N256S 0.34 deleterious(0) possibly_damaging(0.822) TCGA-AZ-4315-01 10 128192675 128192675 G T C10orf90 Missense_Mutation p.S365Y 0.33 tolerated(0.14) benign(0.406) TCGA-AZ-4315-01 10 128202460 128202460 T - C10orf90 Frame_Shift_Del p.N24Ifs*25 0.21 TCGA-AZ-4315-01 10 12870807 12870807 C T CAMK1D Missense_Mutation p.S360L 0.27 deleterious_low_confidence(0.01) benign(0.059) TCGA-AZ-4315-01 10 129859966 129859966 C A PTPRE Missense_Mutation p.F204L 0.13 deleterious(0.04) benign(0.156) TCGA-AZ-4315-01 10 129864363 129864363 G A PTPRE Missense_Mutation p.D250N 0.38 tolerated(0.17) possibly_damaging(0.858) TCGA-AZ-4315-01 10 129904779 129904779 C T MKI67 Silent p.T1775T 0.33 TCGA-AZ-4315-01 10 129910278 129910278 A G MKI67 Silent p.L667L 0.38 TCGA-AZ-4315-01 10 129914798 129914798 C T MKI67 Silent p.E119E 0.38 TCGA-AZ-4315-01 10 13160930 13160930 G T OPTN Missense_Mutation p.K223N 0.31 tolerated(0.16) benign(0.309) TCGA-AZ-4315-01 10 131641435 131641435 A G EBF3 Missense_Mutation p.V378A 0.42 tolerated(0.76) benign(0.169) TCGA-AZ-4315-01 10 131943533 131943533 G A GLRX3 Missense_Mutation p.E51K 0.36 tolerated(0.14) benign(0.054) TCGA-AZ-4315-01 10 13213122 13213122 G A MCM10 Missense_Mutation p.E70K 0.32 deleterious_low_confidence(0.05) benign(0.007) TCGA-AZ-4315-01 10 13264188 13264188 C A UCMA Missense_Mutation p.R111M 0.40 deleterious(0) probably_damaging(0.973) TCGA-AZ-4315-01 10 13271614 13271614 C T UCMA Missense_Mutation p.D106N 0.27 tolerated(0.13) possibly_damaging(0.894) TCGA-AZ-4315-01 10 13275593 13275593 C T UCMA Silent p.S55S 0.49 TCGA-AZ-4315-01 10 133757521 133757521 G A PPP2R2D Missense_Mutation p.R145Q 0.33 deleterious(0.04) probably_damaging(0.959) TCGA-AZ-4315-01 10 133769412 133769412 T C PPP2R2D Missense_Mutation p.V405A 0.31 deleterious(0.03) benign(0.046) TCGA-AZ-4315-01 10 13386862 13386862 C T SEPHS1 Missense_Mutation p.G30D 0.30 deleterious(0) possibly_damaging(0.781) TCGA-AZ-4315-01 10 133930994 133930994 C T JAKMIP3 Silent p.A183A 0.44 TCGA-AZ-4315-01 10 134166646 134166646 G T LRRC27 Intron 0.64 TCGA-AZ-4315-01 10 134463923 134463923 G T INPP5A Nonsense_Mutation p.E74* 0.40 TCGA-AZ-4315-01 10 134628115 134628115 G A TTC40 Silent p.F2417F 0.30 TCGA-AZ-4315-01 10 134735689 134735689 G A TTC40 Missense_Mutation p.R509W 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 134941952 134941952 G A GPR123 Missense_Mutation p.R207H 0.42 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 10 135053614 135053614 C T VENTX Missense_Mutation p.A194V 0.20 deleterious(0.02) benign(0.294) TCGA-AZ-4315-01 10 135082312 135082312 A G ADAM8 Missense_Mutation p.V668A 0.47 tolerated(0.37) benign(0.01) TCGA-AZ-4315-01 10 135165521 135165521 G A PRAP1 Missense_Mutation p.A47T 0.30 tolerated(0.61) benign(0.273) TCGA-AZ-4315-01 10 135166036 135166036 A C PRAP1 3'UTR 0.39 TCGA-AZ-4315-01 10 135193958 135193958 G A PAOX Missense_Mutation p.V213M 0.55 tolerated(0.11) benign(0.056) TCGA-AZ-4315-01 10 13522960 13522960 C T BEND7 Silent p.R282R 0.37 TCGA-AZ-4315-01 10 135350609 135350609 G A CYP2E1 Missense_Mutation p.R337Q 0.31 tolerated(0.06) possibly_damaging(0.547) TCGA-AZ-4315-01 10 135440120 135440120 T G FRG2B Missense_Mutation p.K43Q 0.10 tolerated(0.15) probably_damaging(0.996) TCGA-AZ-4315-01 10 135440152 135440152 T - FRG2B Frame_Shift_Del p.K32Rfs*69 0.18 TCGA-AZ-4315-01 10 13701441 13701441 C A FRMD4A Nonsense_Mutation p.G650* 0.39 TCGA-AZ-4315-01 10 14867582 14867582 T G CDNF Missense_Mutation p.K94T 0.21 tolerated(0.05) probably_damaging(0.926) TCGA-AZ-4315-01 10 14941644 14941644 C T SUV39H2 Missense_Mutation p.A319V 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-4315-01 10 15115206 15115206 T G OLAH Missense_Mutation p.V312G 0.27 deleterious(0.01) possibly_damaging(0.897) TCGA-AZ-4315-01 10 15614290 15614290 G T ITGA8 Missense_Mutation p.L853I 0.29 deleterious(0.03) possibly_damaging(0.764) TCGA-AZ-4315-01 10 15648400 15648400 T C ITGA8 Missense_Mutation p.K596E 0.32 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 10 15760852 15760852 C T ITGA8 Missense_Mutation p.D86N 0.21 tolerated(0.51) benign(0.019) TCGA-AZ-4315-01 10 15879309 15879309 G A FAM188A Missense_Mutation p.S157L 0.31 tolerated(0.22) benign(0.129) TCGA-AZ-4315-01 10 16528511 16528511 T C PTER Missense_Mutation p.V198A 0.31 deleterious(0.02) possibly_damaging(0.861) TCGA-AZ-4315-01 10 16547150 16547150 G T PTER Missense_Mutation p.R277I 0.16 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 10 16957848 16957848 G A CUBN Silent p.F2394F 0.41 TCGA-AZ-4315-01 10 17194073 17194073 C A TRDMT1 Intron 0.35 TCGA-AZ-4315-01 10 17204200 17204200 C T TRDMT1 Silent p.T96T 0.22 TCGA-AZ-4315-01 10 17362951 17362951 C A ST8SIA6 Nonsense_Mutation p.E375* 0.31 TCGA-AZ-4315-01 10 18242353 18242353 C A SLC39A12 Missense_Mutation p.L50I 0.37 deleterious(0.01) possibly_damaging(0.905) TCGA-AZ-4315-01 10 21074555 21074555 T C NEBL 3'UTR 0.32 TCGA-AZ-4315-01 10 21804491 21804491 C A SKIDA1 Missense_Mutation p.S754I 0.39 deleterious(0.03) unknown(0) TCGA-AZ-4315-01 10 22024103 22024103 G A MLLT10 Missense_Mutation p.R965Q 0.25 tolerated(0.19) probably_damaging(0.996) TCGA-AZ-4315-01 10 22048362 22048362 G A DNAJC1 Missense_Mutation p.R445W 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 10 22608897 22608897 G A COMMD3 Silent p.S186S 0.29 TCGA-AZ-4315-01 10 22690153 22690153 C T SPAG6 Silent p.L421L 0.36 TCGA-AZ-4315-01 10 22830773 22830773 G A PIP4K2A Silent p.F332F 0.50 TCGA-AZ-4315-01 10 23482964 23482964 T G PTF1A 3'UTR 0.48 TCGA-AZ-4315-01 10 24508702 24508702 G A KIAA1217 Missense_Mutation p.R73Q 0.27 tolerated(0.29) probably_damaging(0.996) TCGA-AZ-4315-01 10 24669980 24669980 G A KIAA1217 Silent p.T179T 0.22 TCGA-AZ-4315-01 10 24762498 24762498 T G KIAA1217 Silent p.P396P 0.27 TCGA-AZ-4315-01 10 24889806 24889806 A G ARHGAP21 Silent p.G967G 0.33 TCGA-AZ-4315-01 10 24908875 24908875 C T ARHGAP21 Missense_Mutation p.R650K 0.25 tolerated(0.1) benign(0.101) TCGA-AZ-4315-01 10 24909462 24909462 C T ARHGAP21 Silent p.R454R 0.34 TCGA-AZ-4315-01 10 24959226 24959226 C A ARHGAP21 Missense_Mutation p.R55I 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 10 25288428 25288428 G A ENKUR Missense_Mutation p.A42V 0.32 tolerated(0.56) benign(0) TCGA-AZ-4315-01 10 26241024 26241024 T C MYO3A Intron 0.43 TCGA-AZ-4315-01 10 26446395 26446395 C T MYO3A Nonsense_Mutation p.R984* 0.36 TCGA-AZ-4315-01 10 26463211 26463211 A G MYO3A Missense_Mutation p.T1340A 0.41 tolerated_low_confidence(0.74) benign(0.001) TCGA-AZ-4315-01 10 26463303 26463303 G T MYO3A Missense_Mutation p.K1370N 0.31 tolerated_low_confidence(0.06) benign(0.002) TCGA-AZ-4315-01 10 27012969 27012969 G T PDSS1 Nonsense_Mutation p.E250* 0.26 TCGA-AZ-4315-01 10 27035452 27035452 G T PDSS1 3'UTR 0.55 TCGA-AZ-4315-01 10 27303524 27303524 T G ANKRD26 Missense_Mutation p.K1541N 0.32 deleterious(0.02) possibly_damaging(0.787) TCGA-AZ-4315-01 10 27306674 27306674 T C ANKRD26 Silent p.L1421L 0.32 TCGA-AZ-4315-01 10 27356144 27356144 C T ANKRD26 Silent p.E383E 0.23 TCGA-AZ-4315-01 10 27687219 27687219 G A PTCHD3 3'UTR 0.22 TCGA-AZ-4315-01 10 28274002 28274002 A C ARMC4 Missense_Mutation p.L174R 0.33 deleterious(0.03) possibly_damaging(0.703) TCGA-AZ-4315-01 10 28908796 28908796 G A WAC 3'UTR 0.33 TCGA-AZ-4315-01 10 28970276 28970276 C A BAMBI Missense_Mutation p.L56I 0.37 tolerated(0.08) possibly_damaging(0.447) TCGA-AZ-4315-01 10 28971005 28971005 C T BAMBI Missense_Mutation p.A153V 0.43 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 10 28971077 28971077 G A BAMBI Missense_Mutation p.R177Q 0.34 deleterious(0.02) probably_damaging(0.983) TCGA-AZ-4315-01 10 29769680 29769680 C T SVIL Silent p.T1721T 0.41 TCGA-AZ-4315-01 10 29822011 29822011 C A SVIL Nonsense_Mutation p.E429* 0.36 TCGA-AZ-4315-01 10 30306617 30306617 G A KIAA1462 3'UTR 0.39 TCGA-AZ-4315-01 10 30316972 30316972 G A KIAA1462 Missense_Mutation p.S702L 0.25 tolerated(0.15) benign(0.023) TCGA-AZ-4315-01 10 30317081 30317081 A C KIAA1462 Missense_Mutation p.F666V 0.32 tolerated(0.06) benign(0.222) TCGA-AZ-4315-01 10 30318371 30318371 G T KIAA1462 Missense_Mutation p.L236I 0.40 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 10 30657553 30657553 C T AL161651.1 5'Flank 0.23 TCGA-AZ-4315-01 10 31610160 31610160 G A ZEB1 Intron 0.33 TCGA-AZ-4315-01 10 31791437 31791437 G T ZEB1 Nonsense_Mutation p.G162* 0.26 TCGA-AZ-4315-01 10 3182952 3182952 G A PITRM1 Nonsense_Mutation p.R901* 0.33 TCGA-AZ-4315-01 10 3190616 3190616 C T PITRM1 Intron 0.50 TCGA-AZ-4315-01 10 3202075 3202075 T C PITRM1 Silent p.K324K 0.32 TCGA-AZ-4315-01 10 32096734 32096734 C T ARHGAP12 Missense_Mutation p.R798Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 10 32742308 32742308 G A CCDC7 Missense_Mutation p.D106N 0.37 tolerated(0.32) benign(0.004) TCGA-AZ-4315-01 10 32807431 32807431 G A CCDC7 Missense_Mutation p.E331K 0.23 deleterious(0.04) benign(0.359) TCGA-AZ-4315-01 10 32856744 32856744 G T CCDC7 Missense_Mutation p.E448D 0.06 tolerated(0.11) possibly_damaging(0.562) TCGA-AZ-4315-01 10 33018260 33018260 C T C10ORF68 Missense_Mutation p.T234M 0.32 deleterious(0.02) benign(0.004) TCGA-AZ-4315-01 10 33067975 33067975 C T C10ORF68 Intron 0.36 TCGA-AZ-4315-01 10 33217097 33217097 C T ITGB1 Missense_Mutation p.D158N 0.28 tolerated(0.07) possibly_damaging(0.537) TCGA-AZ-4315-01 10 33218814 33218814 C T ITGB1 Silent p.E104E 0.22 TCGA-AZ-4315-01 10 33619779 33619779 G A NRP1 Silent p.S35S 0.28 TCGA-AZ-4315-01 10 34649178 34649178 C A PARD3 Missense_Mutation p.D573Y 0.40 deleterious(0) possibly_damaging(0.492) TCGA-AZ-4315-01 10 35320266 35320266 A C CUL2 Missense_Mutation p.S469A 0.28 tolerated(0.11) probably_damaging(0.979) TCGA-AZ-4315-01 10 35426723 35426723 A C CREM 5'UTR 0.37 TCGA-AZ-4315-01 10 35464555 35464555 A G CREM Intron 0.28 TCGA-AZ-4315-01 10 35896539 35896539 G A GJD4 Missense_Mutation p.R33Q 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 37442560 37442560 G T ANKRD30A Nonsense_Mutation p.E534* 0.20 TCGA-AZ-4315-01 10 37442581 37442581 A C ANKRD30A Missense_Mutation p.K541Q 0.07 tolerated(0.1) possibly_damaging(0.788) TCGA-AZ-4315-01 10 37478476 37478476 A C ANKRD30A Missense_Mutation p.K779Q 0.33 tolerated(0.41) probably_damaging(0.95) TCGA-AZ-4315-01 10 37482006 37482006 G A ANKRD30A Missense_Mutation p.D787N 0.29 tolerated(0.42) possibly_damaging(0.539) TCGA-AZ-4315-01 10 37505245 37505245 A T ANKRD30A Missense_Mutation p.K946N 0.05 deleterious(0.03) benign(0.044) TCGA-AZ-4315-01 10 38121589 38121589 T G ZNF248 Missense_Mutation p.N232H 0.23 tolerated(1) benign(0.005) TCGA-AZ-4315-01 10 38241451 38241451 C A ZNF25 Missense_Mutation p.Q325H 0.34 tolerated(0.37) probably_damaging(0.999) TCGA-AZ-4315-01 10 38344434 38344434 G T ZNF33A Missense_Mutation p.R461I 0.32 deleterious(0.03) probably_damaging(1) TCGA-AZ-4315-01 10 38344796 38344796 G A ZNF33A Missense_Mutation p.E582K 0.26 tolerated(0.34) benign(0.23) TCGA-AZ-4315-01 10 38407035 38407035 G T ZNF37A Missense_Mutation p.R319I 0.30 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 10 38408036 38408036 G T ZNF37A 3'UTR 0.56 TCGA-AZ-4315-01 10 38660098 38660098 G T HSD17B7P2 RNA 0.31 TCGA-AZ-4315-01 10 428685 428685 G A DIP2C Silent p.C631C 0.35 TCGA-AZ-4315-01 10 43015365 43015365 C A ZNF37BP RNA 0.40 TCGA-AZ-4315-01 10 43089016 43089016 C A ZNF33B Missense_Mutation p.R461I 0.34 deleterious(0.03) probably_damaging(1) TCGA-AZ-4315-01 10 43127401 43127401 C A ZNF33B Nonsense_Mutation p.E76* 0.38 TCGA-AZ-4315-01 10 43608363 43608363 G A RET Missense_Mutation p.D571N 0.34 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 10 43615600 43615600 C T RET Silent p.F893F 0.31 TCGA-AZ-4315-01 10 45498929 45498929 G A ZNF22 Missense_Mutation p.R38Q 0.33 tolerated(0.17) benign(0.001) TCGA-AZ-4315-01 10 45891351 45891351 G A ALOX5 Missense_Mutation p.R133H 0.31 tolerated(0.18) benign(0) TCGA-AZ-4315-01 10 465078 465078 C A DIP2C Missense_Mutation p.E222D 0.31 tolerated(0.49) benign(0.023) TCGA-AZ-4315-01 10 46959907 46959907 C T SYT15 3'Flank 0.23 TCGA-AZ-4315-01 10 46999766 46999766 C A GPRIN2 Missense_Mutation p.L296I 0.20 tolerated(0.19) benign(0.076) TCGA-AZ-4315-01 10 48371305 48371305 C T ZNF488 Missense_Mutation p.S258L 0.27 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 10 48413614 48413614 G A GDF2 Silent p.Y418Y 0.25 TCGA-AZ-4315-01 10 4879734 4879734 G A AKR1E2 Silent p.L181L 0.23 TCGA-AZ-4315-01 10 49388853 49388853 G A FRMPD2 Missense_Mutation p.P928L 0.30 tolerated(0.11) benign(0.409) TCGA-AZ-4315-01 10 49609658 49609658 C A MAPK8 5'UTR 0.23 TCGA-AZ-4315-01 10 49612910 49612910 C T MAPK8 Silent p.A46A 0.31 TCGA-AZ-4315-01 10 49917771 49917771 C T WDFY4 5'UTR 0.46 TCGA-AZ-4315-01 10 50036911 50036911 A T WDFY4 Nonsense_Mutation p.K2104* 0.37 TCGA-AZ-4315-01 10 5006045 5006045 C A AKR1C1 Intron 0.12 TCGA-AZ-4315-01 10 50154192 50154192 G A WDFY4 Silent p.E2619E 0.27 TCGA-AZ-4315-01 10 50154917 50154917 T C WDFY4 Missense_Mutation p.V2627A 0.42 tolerated(1) benign(0.019) TCGA-AZ-4315-01 10 50340047 50340047 C T FAM170B Missense_Mutation p.E155K 0.26 deleterious(0.04) benign(0.048) TCGA-AZ-4315-01 10 50691429 50691429 C T ERCC6 Missense_Mutation p.R652Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 10 50819323 50819323 C T SLC18A3 Silent p.F179F 0.37 TCGA-AZ-4315-01 10 50820605 50820605 G A SLC18A3 3'UTR 0.34 TCGA-AZ-4315-01 10 50822282 50822282 A C CHAT Missense_Mutation p.K16T 0.39 unknown(0) TCGA-AZ-4315-01 10 50952738 50952738 T G OGDHL Missense_Mutation p.K564Q 0.35 tolerated(0.26) benign(0.392) TCGA-AZ-4315-01 10 51584740 51584740 C T NCOA4 Missense_Mutation p.S296F 0.37 deleterious(0) possibly_damaging(0.836) TCGA-AZ-4315-01 10 5197849 5197849 G A AKR1CL1 3'Flank 0.30 TCGA-AZ-4315-01 10 5435795 5435795 C T TUBAL3 Silent p.T342T 0.29 TCGA-AZ-4315-01 10 5436308 5436308 C A TUBAL3 Missense_Mutation p.K171N 0.30 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-AZ-4315-01 10 55955481 55955481 G A PCDH15 Missense_Mutation p.P423S 0.27 deleterious(0) probably_damaging(0.951) TCGA-AZ-4315-01 10 56138651 56138651 T G PCDH15 Missense_Mutation p.D70A 0.42 deleterious(0.01) benign(0.15) TCGA-AZ-4315-01 10 5790967 5790967 T C FAM208B Silent p.V1861V 0.26 TCGA-AZ-4315-01 10 5810302 5810302 C A GDI2 Missense_Mutation p.D289Y 0.08 deleterious(0) possibly_damaging(0.711) TCGA-AZ-4315-01 10 60548180 60548180 T G BICC1 Missense_Mutation p.I199M 0.27 deleterious(0) probably_damaging(0.934) TCGA-AZ-4315-01 10 6063598 6063598 G A IL2RA Silent p.F142F 0.30 TCGA-AZ-4315-01 10 61005418 61005419 - T PHYHIPL 3'UTR 0.30 TCGA-AZ-4315-01 10 61014035 61014035 C A FAM13C Intron 0.26 TCGA-AZ-4315-01 10 61022367 61022367 G T FAM13C Missense_Mutation p.P355T 0.36 deleterious(0.03) possibly_damaging(0.783) TCGA-AZ-4315-01 10 61043169 61043169 C T FAM13C Silent p.A182A 0.25 TCGA-AZ-4315-01 10 61718601 61718601 T A C10orf40 5'UTR 0.31 TCGA-AZ-4315-01 10 61829258 61829258 G T ANK3 Missense_Mutation p.S3794Y 0.37 benign(0.135) TCGA-AZ-4315-01 10 61833746 61833746 G A ANK3 Missense_Mutation p.S2298L 0.42 probably_damaging(0.953) TCGA-AZ-4315-01 10 61932881 61932881 G T ANK3 Missense_Mutation p.L750I 0.23 benign(0.291) TCGA-AZ-4315-01 10 62149254 62149254 C A ANK3 Nonsense_Mutation p.E15* 0.33 TCGA-AZ-4315-01 10 62631160 62631160 G A RHOBTB1 3'UTR 0.27 TCGA-AZ-4315-01 10 62648581 62648581 C T RHOBTB1 Missense_Mutation p.R282Q 0.11 deleterious(0.01) benign(0.36) TCGA-AZ-4315-01 10 62671217 62671217 C T RHOBTB1 Silent p.T28T 0.31 TCGA-AZ-4315-01 10 6275105 6275105 C A PFKFB3 3'UTR 0.30 TCGA-AZ-4315-01 10 63851828 63851828 C A ARID5B Missense_Mutation p.S869Y 0.37 tolerated(0.4) benign(0.172) TCGA-AZ-4315-01 10 63852064 63852064 C T ARID5B Nonsense_Mutation p.R948* 0.38 TCGA-AZ-4315-01 10 64382887 64382887 C A ZNF365 Missense_Mutation p.L336I 0.42 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-AZ-4315-01 10 64566394 64566394 T C ADO 3'UTR 0.33 TCGA-AZ-4315-01 10 64913852 64913852 C T NRBF2 Silent p.F246F 0.38 TCGA-AZ-4315-01 10 64974378 64974378 T C JMJD1C Missense_Mutation p.N517D 0.14 tolerated_low_confidence(0.1) benign(0.097) TCGA-AZ-4315-01 10 69556959 69556959 T C DNAJC12 Missense_Mutation p.D171G 0.20 tolerated(0.09) benign(0.003) TCGA-AZ-4315-01 10 69676130 69676130 G A SIRT1 Missense_Mutation p.S675N 0.27 tolerated_low_confidence(0.11) possibly_damaging(0.501) TCGA-AZ-4315-01 10 70204814 70204814 C T DNA2 Missense_Mutation p.A448T 0.27 deleterious(0) possibly_damaging(0.543) TCGA-AZ-4315-01 10 70243221 70243221 C T SLC25A16 Missense_Mutation p.E323K 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 70451650 70451650 C T TET1 3'UTR 0.35 TCGA-AZ-4315-01 10 70515239 70515239 C A CCAR1 Missense_Mutation p.A524D 0.36 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 10 70644710 70644710 A G STOX1 Silent p.E386E 0.43 TCGA-AZ-4315-01 10 70645088 70645088 A C STOX1 Missense_Mutation p.K512N 0.30 tolerated(0.69) benign(0.004) TCGA-AZ-4315-01 10 70931198 70931198 C T VPS26A 3'UTR 0.33 TCGA-AZ-4315-01 10 70998811 70998811 C T HKDC1 Missense_Mutation p.S170L 0.30 deleterious(0.01) possibly_damaging(0.596) TCGA-AZ-4315-01 10 71021045 71021045 C T HKDC1 Silent p.I789I 0.15 TCGA-AZ-4315-01 10 71139646 71139646 G T HK1 Nonsense_Mutation p.E358* 0.24 TCGA-AZ-4315-01 10 71686850 71686850 G A COL13A1 Missense_Mutation p.R458Q 0.30 tolerated(0.06) probably_damaging(0.974) TCGA-AZ-4315-01 10 71917617 71917617 C T SAR1A Missense_Mutation p.R84H 0.36 deleterious(0) possibly_damaging(0.862) TCGA-AZ-4315-01 10 7205834 7205834 C T SFMBT2 Silent p.P861P 0.44 TCGA-AZ-4315-01 10 72489103 72489103 C T ADAMTS14 Silent p.L308L 0.31 TCGA-AZ-4315-01 10 72520600 72520600 G A ADAMTS14 Silent p.P1224P 0.29 TCGA-AZ-4315-01 10 72538097 72538097 C T TBATA Intron 0.32 TCGA-AZ-4315-01 10 72610962 72610962 C T SGPL1 Missense_Mutation p.R86C 0.30 tolerated(0.05) benign(0.302) TCGA-AZ-4315-01 10 73121812 73121812 A C SLC29A3 Missense_Mutation p.D292A 0.23 tolerated(0.73) benign(0.004) TCGA-AZ-4315-01 10 7325879 7325879 C A SFMBT2 Missense_Mutation p.M253I 0.24 tolerated(0.09) benign(0.099) TCGA-AZ-4315-01 10 73326528 73326528 C T CDH23 Silent p.I153I 0.39 TCGA-AZ-4315-01 10 73539107 73539107 C T CDH23 Silent p.G1762G 0.40 TCGA-AZ-4315-01 10 73553082 73553082 G A CDH23 5'Flank 0.24 TCGA-AZ-4315-01 10 73567731 73567731 G T CDH23 Missense_Mutation p.D657Y 0.41 deleterious(0.02) probably_damaging(0.984) TCGA-AZ-4315-01 10 73767281 73767281 G A CHST3 Silent p.P164P 0.38 TCGA-AZ-4315-01 10 73823946 73823946 C A SPOCK2 Missense_Mutation p.K327N 0.41 deleterious(0) probably_damaging(0.937) TCGA-AZ-4315-01 10 73887869 73887869 C A ASCC1 Nonsense_Mutation p.E338* 0.10 TCGA-AZ-4315-01 10 74620283 74620283 G T MCU Missense_Mutation p.R165I 0.27 deleterious(0.04) benign(0.179) TCGA-AZ-4315-01 10 74666364 74666364 A T OIT3 Missense_Mutation p.E185D 0.33 deleterious(0.04) probably_damaging(0.997) TCGA-AZ-4315-01 10 74833524 74833524 A C P4HA1 Missense_Mutation p.I46M 0.26 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 10 74881975 74881975 G T NUDT13 Missense_Mutation p.R89I 0.36 tolerated(0.41) benign(0.009) TCGA-AZ-4315-01 10 75000793 75000793 T C FAM149B1 3'UTR 0.15 TCGA-AZ-4315-01 10 75003112 75003112 G A DNAJC9 3'UTR 0.47 TCGA-AZ-4315-01 10 75037941 75037941 C A TTC18 Missense_Mutation p.K868N 0.38 tolerated(0.13) probably_damaging(0.985) TCGA-AZ-4315-01 10 75053143 75053143 T C TTC18 Missense_Mutation p.M620V 0.36 tolerated(0.07) benign(0.259) TCGA-AZ-4315-01 10 75108276 75108276 G A TTC18 Missense_Mutation p.T85I 0.32 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 10 75184094 75184094 C T MSS51 3'UTR 0.44 TCGA-AZ-4315-01 10 75230480 75230480 G A PPP3CB Missense_Mutation p.S316L 0.24 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 10 75230687 75230687 T G PPP3CB Missense_Mutation p.N282T 0.33 deleterious(0.01) benign(0.437) TCGA-AZ-4315-01 10 75276479 75276479 C A USP54 Missense_Mutation p.E1235D 0.41 tolerated_low_confidence(0.1) benign(0.04) TCGA-AZ-4315-01 10 75530509 75530509 C T SEC24C Nonsense_Mutation p.R1033* 0.31 TCGA-AZ-4315-01 10 75551619 75551619 G A ZSWIM8 Missense_Mutation p.R441H 0.21 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 10 75577309 75577309 C T CAMK2G Missense_Mutation p.R424Q 0.30 deleterious_low_confidence(0.03) probably_damaging(0.984) TCGA-AZ-4315-01 10 75608307 75608307 T G CAMK2G Missense_Mutation p.K193T 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-4315-01 10 75672058 75672058 C T PLAU Silent p.F57F 0.38 TCGA-AZ-4315-01 10 75673514 75673514 C T PLAU Silent p.F226F 0.30 TCGA-AZ-4315-01 10 75877940 75877940 G A VCL 3'UTR 0.35 TCGA-AZ-4315-01 10 7605048 7605048 G T ITIH5 Missense_Mutation p.L943M 0.36 tolerated_low_confidence(0.14) benign(0.07) TCGA-AZ-4315-01 10 76074456 76074456 G A ADK Missense_Mutation p.E76K 0.23 deleterious(0.01) possibly_damaging(0.818) TCGA-AZ-4315-01 10 7614282 7614282 T G ITIH5 Intron 0.47 TCGA-AZ-4315-01 10 76735482 76735482 C T KAT6B Missense_Mutation p.R463C 0.33 benign(0.029) TCGA-AZ-4315-01 10 76739028 76739028 C A KAT6B Missense_Mutation p.S721Y 0.30 probably_damaging(0.964) TCGA-AZ-4315-01 10 7791170 7791170 G A ITIH2 Missense_Mutation p.R905K 0.29 deleterious(0.01) possibly_damaging(0.734) TCGA-AZ-4315-01 10 78832870 78832870 C A KCNMA1 Missense_Mutation p.M578I 0.45 tolerated(0.17) benign(0.166) TCGA-AZ-4315-01 10 79590573 79590573 T G DLG5 Missense_Mutation p.S603R 0.24 deleterious(0.03) probably_damaging(0.993) TCGA-AZ-4315-01 10 79753039 79753039 A C POLR3A Missense_Mutation p.I901M 0.35 tolerated(0.11) benign(0.145) TCGA-AZ-4315-01 10 8005916 8005916 G A TAF3 Missense_Mutation p.G148D 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 10 8007451 8007451 G T TAF3 Nonsense_Mutation p.E660* 0.30 TCGA-AZ-4315-01 10 81272608 81272608 A C EIF5AL1 Missense_Mutation p.K68T 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-AZ-4315-01 10 81273830 81273830 T C EIF5AL1 3'UTR 0.52 TCGA-AZ-4315-01 10 81274578 81274578 G A EIF5AL1 3'UTR 0.41 TCGA-AZ-4315-01 10 81697572 81697572 C T SFTPD 3'UTR 0.22 TCGA-AZ-4315-01 10 81925954 81925954 C T ANXA11 Splice_Site p.X249_splice 0.30 TCGA-AZ-4315-01 10 82098178 82098178 A T DYDC1 Intron 0.36 TCGA-AZ-4315-01 10 85978958 85978958 G A CDHR1 3'Flank 0.30 TCGA-AZ-4315-01 10 86131413 86131413 G A CCSER2 Missense_Mutation p.S202N 0.31 deleterious(0) possibly_damaging(0.464) TCGA-AZ-4315-01 10 88477859 88477859 C A LDB3 Missense_Mutation p.F610L 0.35 deleterious(0) probably_damaging(0.966) TCGA-AZ-4315-01 10 88768575 88768575 C T RP11-96C23.10 3'Flank 0.34 TCGA-AZ-4315-01 10 88769121 88769121 G A RP11-96C23.10 3'Flank 0.11 TCGA-AZ-4315-01 10 88911227 88911227 T A FAM35A Missense_Mutation p.I39N 0.35 deleterious(0) possibly_damaging(0.807) TCGA-AZ-4315-01 10 89126130 89126130 G T NUTM2D Intron 0.12 TCGA-AZ-4315-01 10 89265273 89265273 C T MINPP1 Missense_Mutation p.H201Y 0.42 tolerated(1) benign(0.009) TCGA-AZ-4315-01 10 89473062 89473062 G A PAPSS2 Missense_Mutation p.A126T 0.25 tolerated(0.62) benign(0.001) TCGA-AZ-4315-01 10 89552487 89552487 C T ATAD1 Missense_Mutation p.G63E 0.23 deleterious(0) probably_damaging(0.964) TCGA-AZ-4315-01 10 89623032 89623032 A G PTEN 5'UTR 0.31 TCGA-AZ-4315-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-AZ-4315-01 10 89711899 89711899 C T PTEN Missense_Mutation p.R173C 0.33 deleterious(0.02) probably_damaging(0.913) TCGA-AZ-4315-01 10 90484374 90484374 A G LIPK Missense_Mutation p.N25S 0.24 tolerated(0.78) benign(0.001) TCGA-AZ-4315-01 10 90484379 90484379 G A LIPK Missense_Mutation p.A27T 0.36 tolerated(0.58) benign(0.001) TCGA-AZ-4315-01 10 90768673 90768673 G A FAS Missense_Mutation p.R121Q 0.42 tolerated(0.19) benign(0.234) TCGA-AZ-4315-01 10 909765 909765 C T LARP4B Silent p.P116P 0.27 TCGA-AZ-4315-01 10 91143350 91143350 A C IFIT1B Missense_Mutation p.S94R 0.33 tolerated(0.06) benign(0.33) TCGA-AZ-4315-01 10 91162703 91162703 C T IFIT1 Missense_Mutation p.A224V 0.42 deleterious(0) probably_damaging(0.931) TCGA-AZ-4315-01 10 91344010 91344010 G T PANK1 3'UTR 0.26 TCGA-AZ-4315-01 10 91404767 91404767 G A PANK1 Missense_Mutation p.A98V 0.42 tolerated_low_confidence(0.18) benign(0.003) TCGA-AZ-4315-01 10 91532533 91532533 A G KIF20B Missense_Mutation p.K1737R 0.31 tolerated(0.19) probably_damaging(0.999) TCGA-AZ-4315-01 10 93723954 93723954 T C BTAF1 Missense_Mutation p.C509R 0.48 tolerated(0.32) benign(0) TCGA-AZ-4315-01 10 93726468 93726468 G A BTAF1 Missense_Mutation p.R535K 0.34 tolerated(1) benign(0.001) TCGA-AZ-4315-01 10 93904780 93904780 G A CPEB3 Missense_Mutation p.R429C 0.37 tolerated(0.11) possibly_damaging(0.719) TCGA-AZ-4315-01 10 94594556 94594556 G A EXOC6 Missense_Mutation p.E42K 0.36 deleterious(0.02) benign(0.02) TCGA-AZ-4315-01 10 94712093 94712093 G T EXOC6 Nonsense_Mutation p.E494* 0.27 TCGA-AZ-4315-01 10 95072947 95072947 G A MYOF Missense_Mutation p.R1907C 0.41 deleterious(0.01) possibly_damaging(0.453) TCGA-AZ-4315-01 10 95517949 95517950 - A LGI1 Frame_Shift_Ins p.R18Kfs*16 0.26 TCGA-AZ-4315-01 10 95518560 95518560 T G LGI1 Missense_Mutation p.F87V 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 95718596 95718596 T C PIPSL RNA 0.30 TCGA-AZ-4315-01 10 95791949 95791949 G A PLCE1 Silent p.P382P 0.38 TCGA-AZ-4315-01 10 96005758 96005758 G T PLCE1 Nonsense_Mutation p.E826* 0.16 TCGA-AZ-4315-01 10 96028705 96028705 G A PLCE1 Missense_Mutation p.R1434Q 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 10 96112151 96112151 C A NOC3L Nonsense_Mutation p.E290* 0.35 TCGA-AZ-4315-01 10 96824642 96824642 C T CYP2C8 Missense_Mutation p.R186Q 0.27 deleterious(0.01) probably_damaging(0.946) TCGA-AZ-4315-01 10 97135757 97135757 G T SORBS1 Missense_Mutation p.F570L 0.29 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-AZ-4315-01 10 97181959 97181959 G A SORBS1 Missense_Mutation p.P106S 0.29 tolerated_low_confidence(0.29) benign(0.003) TCGA-AZ-4315-01 10 97452745 97452745 G A TCTN3 Missense_Mutation p.S144F 0.34 deleterious(0) possibly_damaging(0.905) TCGA-AZ-4315-01 10 97779350 97779350 T C CC2D2B Intron 0.31 TCGA-AZ-4315-01 10 98095692 98095692 G T DNTT Missense_Mutation p.K468N 0.31 tolerated(0.15) benign(0.441) TCGA-AZ-4315-01 10 98098050 98098050 G T DNTT 3'UTR 0.26 TCGA-AZ-4315-01 10 98105854 98105854 T C OPALIN Silent p.T90T 0.24 TCGA-AZ-4315-01 10 98355079 98355079 T G PIK3AP1 3'UTR 0.67 TCGA-AZ-4315-01 10 98386580 98386580 G A PIK3AP1 Silent p.D518D 0.12 TCGA-AZ-4315-01 10 98469336 98469336 C T PIK3AP1 Missense_Mutation p.A140T 0.35 tolerated(0.35) benign(0.017) TCGA-AZ-4315-01 10 98744207 98744207 G T C10orf12 Missense_Mutation p.E1020D 0.28 deleterious(0.02) possibly_damaging(0.462) TCGA-AZ-4315-01 10 98744693 98744693 G A C10orf12 Silent p.T1182T 0.36 TCGA-AZ-4315-01 10 98791370 98791370 G A SLIT1 Missense_Mutation p.R835C 0.30 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 10 98819901 98819901 T C SLIT1 Missense_Mutation p.N319S 0.37 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 10 98989535 98989535 C T ARHGAP19 Missense_Mutation p.E461K 0.22 tolerated(0.09) possibly_damaging(0.793) TCGA-AZ-4315-01 10 99156021 99156021 C T RRP12 Missense_Mutation p.R136H 0.51 deleterious(0) possibly_damaging(0.579) TCGA-AZ-4315-01 10 99215490 99215490 G A ZDHHC16 Missense_Mutation p.E300K 0.34 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 10 99504523 99504523 G T ZFYVE27 Silent p.V102V 0.31 TCGA-AZ-4315-01 10 99667846 99667846 G A CRTAC1 Silent p.C258C 0.22 TCGA-AZ-4315-01 10 99968615 99968615 A C R3HCC1L Missense_Mutation p.Q248H 0.28 deleterious(0) possibly_damaging(0.751) TCGA-AZ-4315-01 11 100168385 100168385 C T CNTN5 Silent p.S781S 0.33 TCGA-AZ-4315-01 11 100806959 100806959 G A ARHGAP42 Missense_Mutation p.R243Q 0.26 deleterious(0.01) benign(0.015) TCGA-AZ-4315-01 11 100933387 100933387 G A PGR Missense_Mutation p.A668V 0.39 deleterious(0.02) benign(0.012) TCGA-AZ-4315-01 11 101341943 101341944 - T TRPC6 Frame_Shift_Ins p.G794Rfs*13 0.22 TCGA-AZ-4315-01 11 101342954 101342954 G T TRPC6 Missense_Mutation p.L707I 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 11 101773401 101773401 G A ANGPTL5 Missense_Mutation p.P164L 0.27 deleterious(0.04) possibly_damaging(0.725) TCGA-AZ-4315-01 11 101773405 101773405 T C ANGPTL5 Missense_Mutation p.T163A 0.28 tolerated(0.4) probably_damaging(0.913) TCGA-AZ-4315-01 11 101777907 101777907 A C ANGPTL5 Silent p.V56V 0.33 TCGA-AZ-4315-01 11 101832737 101832737 T C KIAA1377 Missense_Mutation p.V324A 0.34 tolerated(0.58) benign(0.027) TCGA-AZ-4315-01 11 1019354 1019354 C T MUC6 Silent p.T1317T 0.31 TCGA-AZ-4315-01 11 102221343 102221343 C A BIRC2 Missense_Mutation p.S253Y 0.52 deleterious(0.01) benign(0.197) TCGA-AZ-4315-01 11 102401328 102401328 G A MMP7 Missense_Mutation p.A35V 0.17 tolerated(0.59) benign(0.346) TCGA-AZ-4315-01 11 102480739 102480739 G A MMP20 Silent p.F182F 0.30 TCGA-AZ-4315-01 11 102641424 102641424 G T MMP10 3'UTR 0.41 TCGA-AZ-4315-01 11 102709926 102709926 C A MMP3 Missense_Mutation p.L328F 0.34 tolerated(0.77) benign(0.085) TCGA-AZ-4315-01 11 102743827 102743827 A C MMP12 RNA 0.43 TCGA-AZ-4315-01 11 102743841 102743841 C A MMP12 Intron 0.37 TCGA-AZ-4315-01 11 102825296 102825296 G A MMP13 Silent p.V134V 0.32 TCGA-AZ-4315-01 11 102987392 102987392 G T DYNC2H1 Nonsense_Mutation p.E239* 0.17 TCGA-AZ-4315-01 11 103057058 103057058 T C DYNC2H1 Missense_Mutation p.Y2241H 0.32 benign(0.251) TCGA-AZ-4315-01 11 103080683 103080683 A C DYNC2H1 Missense_Mutation p.N2845H 0.36 benign(0.001) TCGA-AZ-4315-01 11 103086513 103086513 G T DYNC2H1 Nonsense_Mutation p.E2920* 0.32 TCGA-AZ-4315-01 11 103173887 103173887 G A DYNC2H1 Missense_Mutation p.E3728K 0.33 benign(0.168) TCGA-AZ-4315-01 11 103173912 103173912 C A DYNC2H1 Missense_Mutation p.P3736Q 0.36 possibly_damaging(0.804) TCGA-AZ-4315-01 11 103909479 103909479 T G DDI1 3'UTR 0.30 TCGA-AZ-4315-01 11 103909910 103909910 C T DDI1 3'UTR 0.27 TCGA-AZ-4315-01 11 104821806 104821806 C A CASP4 Missense_Mutation p.R131I 0.32 deleterious(0.02) benign(0.03) TCGA-AZ-4315-01 11 10483264 10483264 G T AMPD3 Missense_Mutation p.Q75H 0.30 tolerated(0.1) possibly_damaging(0.728) TCGA-AZ-4315-01 11 104900525 104900525 A G CASP1 Silent p.I243I 0.34 TCGA-AZ-4315-01 11 10516504 10516504 C T AMPD3 Missense_Mutation p.A407V 0.32 tolerated(0.11) probably_damaging(1) TCGA-AZ-4315-01 11 105481778 105481778 C T GRIA4 Silent p.L18L 0.26 TCGA-AZ-4315-01 11 105483018 105483018 G A GRIA4 Missense_Mutation p.R35Q 0.30 tolerated(0.58) possibly_damaging(0.48) TCGA-AZ-4315-01 11 105795401 105795401 C T GRIA4 Missense_Mutation p.P585S 0.31 tolerated(0.25) benign(0.355) TCGA-AZ-4315-01 11 10580680 10580680 C T LYVE1 Missense_Mutation p.R316Q 0.35 deleterious(0.03) possibly_damaging(0.487) TCGA-AZ-4315-01 11 105881292 105881292 C T MSANTD4 Missense_Mutation p.R118Q 0.33 tolerated(0.67) benign(0.001) TCGA-AZ-4315-01 11 105929634 105929634 G A KBTBD3 Missense_Mutation p.P64L 0.25 tolerated(0.06) possibly_damaging(0.548) TCGA-AZ-4315-01 11 10598112 10598112 C A MRVI1 Nonsense_Mutation p.E836* 0.32 TCGA-AZ-4315-01 11 10647680 10647680 C A MRVI1 Nonsense_Mutation p.E401* 0.31 TCGA-AZ-4315-01 11 10789919 10789919 C T CTR9 Missense_Mutation p.R664C 0.31 deleterious(0.03) probably_damaging(0.985) TCGA-AZ-4315-01 11 10794758 10794758 C A CTR9 Missense_Mutation p.L889I 0.27 tolerated(0.09) benign(0.014) TCGA-AZ-4315-01 11 107974999 107974999 A C CUL5 Missense_Mutation p.N744T 0.36 deleterious(0.02) probably_damaging(0.97) TCGA-AZ-4315-01 11 108114847 108114847 T C ATM Splice_Site p.X221_splice 0.34 TCGA-AZ-4315-01 11 108121669 108121669 C T ATM Missense_Mutation p.R493C 0.35 deleterious(0.02) benign(0.052) TCGA-AZ-4315-01 11 108153601 108153601 C A ATM Missense_Mutation p.F1247L 0.39 deleterious(0) possibly_damaging(0.837) TCGA-AZ-4315-01 11 108175528 108175528 C T ATM Nonsense_Mutation p.R1875* 0.32 TCGA-AZ-4315-01 11 10822512 10822512 T C EIF4G2 Silent p.G512G 0.29 TCGA-AZ-4315-01 11 10823149 10823149 C T EIF4G2 Intron 0.34 TCGA-AZ-4315-01 11 10825450 10825450 T C EIF4G2 Missense_Mutation p.K233R 0.34 tolerated(0.09) probably_damaging(0.998) TCGA-AZ-4315-01 11 108276213 108276213 C A C11orf65 Missense_Mutation p.R168I 0.25 deleterious(0) probably_damaging(0.936) TCGA-AZ-4315-01 11 108381142 108381142 G A EXPH5 Nonsense_Mutation p.R1698* 0.34 TCGA-AZ-4315-01 11 108385431 108385431 T G EXPH5 Missense_Mutation p.N268T 0.06 tolerated(0.08) possibly_damaging(0.535) TCGA-AZ-4315-01 11 108564256 108564256 G A DDX10 Silent p.V384V 0.30 TCGA-AZ-4315-01 11 109294377 109294377 G A C11orf87 Silent p.P6P 0.49 TCGA-AZ-4315-01 11 109295932 109295932 C A C11orf87 3'UTR 0.32 TCGA-AZ-4315-01 11 110008025 110008025 G A ZC3H12C Missense_Mutation p.R220Q 0.37 tolerated(0.16) benign(0.067) TCGA-AZ-4315-01 11 110035110 110035110 G A ZC3H12C Missense_Mutation p.E434K 0.34 deleterious(0) possibly_damaging(0.836) TCGA-AZ-4315-01 11 110036424 110036424 G A ZC3H12C Missense_Mutation p.A872T 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4315-01 11 110333122 110333122 A G FDX1 Missense_Mutation p.N162S 0.24 deleterious(0.01) benign(0.022) TCGA-AZ-4315-01 11 110450614 110450614 T C ARHGAP20 Missense_Mutation p.D1019G 0.35 tolerated(0.15) benign(0.01) TCGA-AZ-4315-01 11 110451545 110451545 C T ARHGAP20 Missense_Mutation p.D709N 0.26 tolerated(0.81) benign(0.022) TCGA-AZ-4315-01 11 110462837 110462837 T C ARHGAP20 Missense_Mutation p.N336S 0.34 tolerated(0.12) benign(0.245) TCGA-AZ-4315-01 11 111168416 111168416 C T COLCA1 5'UTR 0.22 TCGA-AZ-4315-01 11 111177228 111177228 C A COLCA2 5'UTR 0.43 TCGA-AZ-4315-01 11 111386768 111386768 A C C11orf88 Missense_Mutation p.N91T 0.31 tolerated(0.44) benign(0.003) TCGA-AZ-4315-01 11 111404488 111404488 G T C11orf88 Missense_Mutation p.E146D 0.43 deleterious(0.03) probably_damaging(0.917) TCGA-AZ-4315-01 11 111572281 111572281 C T SIK2 Missense_Mutation p.P237S 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 11 111592580 111592580 C T SIK2 Silent p.S657S 0.38 TCGA-AZ-4315-01 11 111626053 111626053 C T PPP2R1B Missense_Mutation p.R270H 0.33 deleterious(0.01) probably_damaging(0.958) TCGA-AZ-4315-01 11 111749371 111749371 C T FDXACB1 Missense_Mutation p.E80K 0.35 tolerated(0.61) benign(0.015) TCGA-AZ-4315-01 11 111779461 111779461 T A CRYAB 3'UTR 0.41 TCGA-AZ-4315-01 11 111953229 111953229 C A C11orf57 Missense_Mutation p.P139T 0.28 tolerated(0.6) benign(0.142) TCGA-AZ-4315-01 11 111953279 111953279 G T C11orf57 Missense_Mutation p.K155N 0.34 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 112019358 112019358 G T IL18 Missense_Mutation p.L110I 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 11 112025724 112025724 A C IL18 Missense_Mutation p.F18C 0.40 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 11 113133612 113133612 C A NCAM1 Intron 0.22 TCGA-AZ-4315-01 11 113264228 113264228 G T ANKK1 Nonsense_Mutation p.E71* 0.37 TCGA-AZ-4315-01 11 113288814 113288814 G A DRD2 Silent p.F110F 0.24 TCGA-AZ-4315-01 11 113614658 113614658 C A ZW10 Missense_Mutation p.M459I 0.30 tolerated(0.34) benign(0) TCGA-AZ-4315-01 11 113661756 113661756 G A ATF4P4 RNA 0.33 TCGA-AZ-4315-01 11 113711469 113711469 C T USP28 Missense_Mutation p.A129T 0.35 tolerated(0.09) benign(0.14) TCGA-AZ-4315-01 11 114057705 114057705 C T ZBTB16 Silent p.C466C 0.36 TCGA-AZ-4315-01 11 114117945 114117945 C A ZBTB16 Missense_Mutation p.F550L 0.31 tolerated(0.07) possibly_damaging(0.802) TCGA-AZ-4315-01 11 114276460 114276460 C A RBM7 Nonsense_Mutation p.S126* 0.32 TCGA-AZ-4315-01 11 114441550 114441550 C A NXPE4 3'Flank 0.38 TCGA-AZ-4315-01 11 115047109 115047109 G A CADM1 3'UTR 0.27 TCGA-AZ-4315-01 11 115049416 115049416 G A CADM1 Silent p.F386F 0.49 TCGA-AZ-4315-01 11 116649574 116649574 C A ZNF259 3'UTR 0.33 TCGA-AZ-4315-01 11 117152800 117152800 G T RNF214 Missense_Mutation p.R509I 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 117329482 117329482 T C DSCAML1 Missense_Mutation p.T1246A 0.28 deleterious(0) probably_damaging(0.926) TCGA-AZ-4315-01 11 117352738 117352738 G A DSCAML1 Silent p.R893R 0.19 TCGA-AZ-4315-01 11 117395557 117395557 G A DSCAML1 Silent p.F360F 0.38 TCGA-AZ-4315-01 11 118111017 118111017 A G MPZL3 Missense_Mutation p.L50S 0.26 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 11 118175617 118175617 A C CD3E 5'UTR 0.27 TCGA-AZ-4315-01 11 118242237 118242237 C T UBE4A Silent p.F139F 0.30 TCGA-AZ-4315-01 11 118272238 118272238 G T ATP5L 5'UTR 0.29 TCGA-AZ-4315-01 11 118343913 118343913 C T KMT2A Missense_Mutation p.S680L 0.32 probably_damaging(0.945) TCGA-AZ-4315-01 11 118344107 118344107 C T KMT2A Nonsense_Mutation p.R745* 0.34 TCGA-AZ-4315-01 11 118360862 118360862 C T KMT2A Missense_Mutation p.R1532C 0.42 probably_damaging(0.983) TCGA-AZ-4315-01 11 118375917 118375917 A C KMT2A Missense_Mutation p.K3104Q 0.34 probably_damaging(0.996) TCGA-AZ-4315-01 11 118403018 118403018 G A TMEM25 Missense_Mutation p.S75N 0.28 tolerated(0.89) benign(0.003) TCGA-AZ-4315-01 11 118765001 118765001 C T CXCR5 Missense_Mutation p.R250W 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 11 118771708 118771708 G A BCL9L Missense_Mutation p.S915L 0.26 possibly_damaging(0.796) TCGA-AZ-4315-01 11 118918711 118918711 C T HYOU1 Missense_Mutation p.E820K 0.36 tolerated(0.12) benign(0.043) TCGA-AZ-4315-01 11 118926476 118926476 T G HYOU1 Missense_Mutation p.E57D 0.27 deleterious(0) probably_damaging(0.951) TCGA-AZ-4315-01 11 119027091 119027091 G T ABCG4 Missense_Mutation p.A247S 0.33 tolerated(0.07) possibly_damaging(0.725) TCGA-AZ-4315-01 11 119145620 119145620 G A CBL Missense_Mutation p.E276K 0.34 deleterious(0.01) probably_damaging(0.923) TCGA-AZ-4315-01 11 119169130 119169130 G T CBL Missense_Mutation p.D772Y 0.36 tolerated_low_confidence(0.15) benign(0.002) TCGA-AZ-4315-01 11 119181068 119181068 C T MCAM Silent p.P634P 0.39 TCGA-AZ-4315-01 11 119183068 119183068 C T MCAM Missense_Mutation p.R311Q 0.34 tolerated(1) benign(0.002) TCGA-AZ-4315-01 11 11969590 11969590 C T USP47 Nonsense_Mutation p.R996* 0.36 TCGA-AZ-4315-01 11 119998260 119998260 C T TRIM29 Silent p.E306E 0.43 TCGA-AZ-4315-01 11 120319861 120319861 G A ARHGEF12 Missense_Mutation p.R594Q 0.30 deleterious(0.01) probably_damaging(0.914) TCGA-AZ-4315-01 11 120707506 120707506 G A GRIK4 Missense_Mutation p.E233K 0.36 tolerated(0.08) possibly_damaging(0.672) TCGA-AZ-4315-01 11 121008283 121008283 C T TECTA Missense_Mutation p.T1032M 0.36 deleterious(0) benign(0.339) TCGA-AZ-4315-01 11 121016320 121016320 C A TECTA Silent p.I1200I 0.24 TCGA-AZ-4315-01 11 121038844 121038844 C T TECTA Missense_Mutation p.R1890C 0.29 deleterious(0) possibly_damaging(0.877) TCGA-AZ-4315-01 11 121177881 121177881 T G SC5D Missense_Mutation p.F187C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 121461567 121461567 G A SORL1 Intron 0.32 TCGA-AZ-4315-01 11 121986155 121986155 A C BLID 3'UTR 0.35 TCGA-AZ-4315-01 11 122678880 122678880 G A UBASH3B Missense_Mutation p.R603Q 0.41 tolerated(0.22) probably_damaging(0.982) TCGA-AZ-4315-01 11 12281507 12281507 T C MICAL2 Intron 0.22 TCGA-AZ-4315-01 11 122848575 122848575 G A BSX Missense_Mutation p.R162W 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 11 122929843 122929843 C T HSPA8 Missense_Mutation p.R416H 0.37 deleterious_low_confidence(0.04) benign(0.017) TCGA-AZ-4315-01 11 123625150 123625150 A C OR6X1 Missense_Mutation p.F26C 0.28 deleterious(0.01) possibly_damaging(0.836) TCGA-AZ-4315-01 11 123677018 123677018 C T OR6M1 Missense_Mutation p.A14T 0.31 deleterious(0) benign(0.266) TCGA-AZ-4315-01 11 123777512 123777512 C T OR8D4 Missense_Mutation p.A125V 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 11 123811131 123811131 G A OR4D5 Missense_Mutation p.A270T 0.36 tolerated(0.11) benign(0.185) TCGA-AZ-4315-01 11 123814511 123814511 A C OR6T1 Missense_Mutation p.F12C 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 11 123847694 123847694 G A OR10S1 Silent p.I235I 0.50 TCGA-AZ-4315-01 11 124189439 124189439 C T OR8D2 Missense_Mutation p.A219T 0.27 tolerated(0.19) benign(0.015) TCGA-AZ-4315-01 11 124412947 124412947 C T OR8B12 Missense_Mutation p.V202M 0.38 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-AZ-4315-01 11 124489752 124489752 A T PANX3 Missense_Mutation p.D367V 0.36 deleterious(0.04) probably_damaging(0.997) TCGA-AZ-4315-01 11 124496414 124496414 G A TBRG1 Missense_Mutation p.R167H 0.15 deleterious(0) probably_damaging(0.985) TCGA-AZ-4315-01 11 124545165 124545165 C T SPA17 Missense_Mutation p.S2L 0.19 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 11 124735557 124735557 G A ROBO3 Silent p.E28E 0.26 TCGA-AZ-4315-01 11 124793897 124793897 G A HEPACAM Missense_Mutation p.S146L 0.44 deleterious(0) probably_damaging(0.975) TCGA-AZ-4315-01 11 125255595 125255595 G A PKNOX2 Missense_Mutation p.D126N 0.29 tolerated(0.3) benign(0.011) TCGA-AZ-4315-01 11 125359223 125359223 A G FEZ1 Intron 0.33 TCGA-AZ-4315-01 11 125366714 125366714 T G AP000708.1 3'UTR 0.38 TCGA-AZ-4315-01 11 125616580 125616580 G T PATE1 Missense_Mutation p.R26I 0.25 tolerated(0.25) benign(0.053) TCGA-AZ-4315-01 11 125766020 125766020 C T PUS3 Missense_Mutation p.A54T 0.31 tolerated(0.12) benign(0.001) TCGA-AZ-4315-01 11 125792782 125792782 G T DDX25 3'UTR 0.30 TCGA-AZ-4315-01 11 125831707 125831707 T C CDON Silent p.E1181E 0.31 TCGA-AZ-4315-01 11 125848220 125848220 C T CDON Missense_Mutation p.R1112Q 0.27 tolerated(0.5) benign(0.252) TCGA-AZ-4315-01 11 125885165 125885165 T C CDON Missense_Mutation p.H390R 0.36 deleterious(0.02) benign(0.016) TCGA-AZ-4315-01 11 126110838 126110838 G T FAM118B Missense_Mutation p.D80Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 126126498 126126498 C A FAM118B Missense_Mutation p.L245I 0.25 deleterious(0.01) benign(0.389) TCGA-AZ-4315-01 11 126142914 126142914 C A FOXRED1 Missense_Mutation p.F119L 0.34 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 11 1266380 1266380 G A MUC5B Missense_Mutation p.R2757Q 0.30 unknown(0) TCGA-AZ-4315-01 11 1269709 1269709 A G MUC5B Missense_Mutation p.T3867A 0.28 unknown(0) TCGA-AZ-4315-01 11 1272595 1272595 A C MUC5B Missense_Mutation p.T4829P 0.35 unknown(0) TCGA-AZ-4315-01 11 128709252 128709252 A G KCNJ1 Missense_Mutation p.V315A 0.23 deleterious(0) benign(0.239) TCGA-AZ-4315-01 11 130278672 130278672 G A ADAMTS8 Silent p.F638F 0.34 TCGA-AZ-4315-01 11 130773181 130773181 G T SNX19 Missense_Mutation p.L848I 0.39 tolerated(0.78) benign(0.042) TCGA-AZ-4315-01 11 130779918 130779918 C A SNX19 Missense_Mutation p.D677Y 0.34 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 11 132306564 132306564 C T OPCML Silent p.K258K 0.30 TCGA-AZ-4315-01 11 133805656 133805656 C T IGSF9B Missense_Mutation p.D275N 0.46 deleterious(0.04) possibly_damaging(0.894) TCGA-AZ-4315-01 11 13393796 13393796 G A ARNTL Missense_Mutation p.E302K 0.52 tolerated(0.09) benign(0.079) TCGA-AZ-4315-01 11 134029931 134029931 G T NCAPD3 Missense_Mutation p.F1241L 0.40 tolerated(0.15) benign(0.011) TCGA-AZ-4315-01 11 134054641 134054641 A C NCAPD3 Missense_Mutation p.V781G 0.32 deleterious(0) possibly_damaging(0.52) TCGA-AZ-4315-01 11 134131038 134131038 C T ACAD8 Missense_Mutation p.A269V 0.31 deleterious(0) probably_damaging(0.958) TCGA-AZ-4315-01 11 134162056 134162056 C A GLB1L3 Missense_Mutation p.L254I 0.30 deleterious(0.01) possibly_damaging(0.873) TCGA-AZ-4315-01 11 134175160 134175160 G A GLB1L3 Intron 0.38 TCGA-AZ-4315-01 11 134177053 134177053 C T GLB1L3 Silent p.V304V 0.41 TCGA-AZ-4315-01 11 13736093 13736093 C T FAR1 Silent p.L331L 0.18 TCGA-AZ-4315-01 11 14839779 14839779 T G PDE3B Missense_Mutation p.S525A 0.37 tolerated(0.51) benign(0.004) TCGA-AZ-4315-01 11 14899784 14899784 C T CYP2R1 Missense_Mutation p.A464T 0.31 tolerated(0.25) benign(0.01) TCGA-AZ-4315-01 11 14990210 14990210 T C CALCA 3'UTR 0.31 TCGA-AZ-4315-01 11 15262049 15262049 G A INSC Missense_Mutation p.A531T 0.26 deleterious(0.01) benign(0.072) TCGA-AZ-4315-01 11 15994229 15994229 G A SOX6 3'UTR 0.33 TCGA-AZ-4315-01 11 15994302 15994302 T G SOX6 3'UTR 0.24 TCGA-AZ-4315-01 11 16256219 16256219 T C SOX6 Splice_Site p.X149_splice 0.24 TCGA-AZ-4315-01 11 1628932 1628932 G A KRTAP5-3 Silent p.C228C 0.24 TCGA-AZ-4315-01 11 1652148 1652148 C A KRTAP5-5 3'UTR 0.23 TCGA-AZ-4315-01 11 17470125 17470125 C T ABCC8 Missense_Mutation p.D424N 0.34 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 11 17552830 17552830 C T USH1C Silent p.K86K 0.29 TCGA-AZ-4315-01 11 17632173 17632173 T C OTOG Missense_Mutation p.S1788P 0.17 benign(0.004) TCGA-AZ-4315-01 11 17801105 17801105 G A KCNC1 Missense_Mutation p.R536H 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.656) TCGA-AZ-4315-01 11 18159447 18159447 G C MRGPRX3 Missense_Mutation p.G233A 0.36 deleterious(0.01) probably_damaging(0.941) TCGA-AZ-4315-01 11 18159571 18159571 C T MRGPRX3 Silent p.F274F 0.23 TCGA-AZ-4315-01 11 18194923 18194923 C T MRGPRX4 Silent p.V40V 0.40 TCGA-AZ-4315-01 11 18267011 18267011 C T SAA2 Silent p.S94S 0.35 TCGA-AZ-4315-01 11 18322457 18322457 A C HPS5 Missense_Mutation p.H301Q 0.32 tolerated(0.37) benign(0.077) TCGA-AZ-4315-01 11 1857139 1857139 G A SYT8 Silent p.L108L 0.33 TCGA-AZ-4315-01 11 18600285 18600285 G T UEVLD Missense_Mutation p.S38Y 0.24 tolerated(0.11) possibly_damaging(0.864) TCGA-AZ-4315-01 11 18631569 18631569 A C SPTY2D1 Intron 0.26 TCGA-AZ-4315-01 11 18723241 18723241 C T TMEM86A Silent p.Y136Y 0.38 TCGA-AZ-4315-01 11 19077705 19077705 T C MRGPRX2 Missense_Mutation p.Q82R 0.24 tolerated(0.35) benign(0.005) TCGA-AZ-4315-01 11 19204044 19204044 A C CSRP3 3'UTR 0.42 TCGA-AZ-4315-01 11 19256333 19256333 C A E2F8 Missense_Mutation p.D242Y 0.21 deleterious(0) possibly_damaging(0.886) TCGA-AZ-4315-01 11 19258975 19258975 G A E2F8 Nonsense_Mutation p.R113* 0.22 TCGA-AZ-4315-01 11 1951052 1951052 G T TNNT3 Missense_Mutation p.R40I 0.40 deleterious(0) benign(0.034) TCGA-AZ-4315-01 11 1953741 1953741 C T TNNT3 Silent p.F56F 0.26 TCGA-AZ-4315-01 11 19955260 19955260 G T NAV2 Missense_Mutation p.E513D 0.39 tolerated(0.24) benign(0.005) TCGA-AZ-4315-01 11 20636265 20636265 G T SLC6A5 Missense_Mutation p.K342N 0.32 tolerated(0.27) benign(0.017) TCGA-AZ-4315-01 11 20907037 20907037 G A NELL1 Missense_Mutation p.G185E 0.31 tolerated(0.21) benign(0.248) TCGA-AZ-4315-01 11 20968956 20968956 G T NELL1 Missense_Mutation p.E382D 0.38 tolerated(0.32) benign(0.005) TCGA-AZ-4315-01 11 209760 209760 C A RIC8A Missense_Mutation p.F162L 0.26 tolerated(0.29) benign(0.071) TCGA-AZ-4315-01 11 2154759 2154759 C T IGF2 Silent p.P154P 0.32 TCGA-AZ-4315-01 11 2168807 2168807 G A INS-IGF2 3'UTR 0.27 TCGA-AZ-4315-01 11 22239798 22239798 A G ANO5 Missense_Mutation p.K49E 0.34 deleterious(0.04) benign(0.185) TCGA-AZ-4315-01 11 22291884 22291884 G A ANO5 Missense_Mutation p.R642Q 0.31 deleterious(0.03) possibly_damaging(0.893) TCGA-AZ-4315-01 11 22397604 22397604 A G SLC17A6 Silent p.V417V 0.24 TCGA-AZ-4315-01 11 22696527 22696527 G A GAS2 Missense_Mutation p.E38K 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 2291946 2291946 G A ASCL2 5'UTR 0.23 TCGA-AZ-4315-01 11 24750749 24750749 G T LUZP2 Nonsense_Mutation p.E33* 0.24 TCGA-AZ-4315-01 11 24927551 24927551 A C LUZP2 Missense_Mutation p.K137N 0.17 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 11 2609948 2609948 G T KCNQ1 Missense_Mutation p.K419N 0.29 tolerated(0.12) benign(0.197) TCGA-AZ-4315-01 11 26463504 26463504 C T ANO3 Missense_Mutation p.S29L 0.16 deleterious_low_confidence(0.01) benign(0.049) TCGA-AZ-4315-01 11 26663541 26663541 A G ANO3 Missense_Mutation p.N747S 0.33 tolerated(0.16) probably_damaging(0.999) TCGA-AZ-4315-01 11 26702605 26702605 C T SLC5A12 Missense_Mutation p.S491N 0.34 tolerated(0.24) benign(0.002) TCGA-AZ-4315-01 11 26743440 26743440 G T SLC5A12 5'UTR 0.45 TCGA-AZ-4315-01 11 27017565 27017565 C T FIBIN 3'UTR 0.30 TCGA-AZ-4315-01 11 27018445 27018445 T G FIBIN 3'UTR 0.33 TCGA-AZ-4315-01 11 27141197 27141197 T C BBOX1 Missense_Mutation p.V214A 0.33 tolerated(0.07) possibly_damaging(0.867) TCGA-AZ-4315-01 11 27389932 27389932 C T LGR4 Missense_Mutation p.E780K 0.40 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 11 28080697 28080697 G A KIF18A Missense_Mutation p.A575V 0.26 tolerated(0.2) possibly_damaging(0.637) TCGA-AZ-4315-01 11 28090851 28090851 G A KIF18A Silent p.V515V 0.40 TCGA-AZ-4315-01 11 2976991 2976991 C T NAP1L4 Missense_Mutation p.G300R 0.29 tolerated(0.34) possibly_damaging(0.853) TCGA-AZ-4315-01 11 30033966 30033966 C T KCNA4 Missense_Mutation p.R87Q 0.19 tolerated_low_confidence(0.23) benign(0.238) TCGA-AZ-4315-01 11 30034292 30034292 C A KCNA4 5'UTR 0.30 TCGA-AZ-4315-01 11 3022209 3022209 G A CARS 3'UTR 0.42 TCGA-AZ-4315-01 11 30255265 30255265 G A FSHB Missense_Mutation p.G103D 0.25 tolerated(0.18) benign(0.193) TCGA-AZ-4315-01 11 30354451 30354451 G A ARL14EP Silent p.T155T 0.24 TCGA-AZ-4315-01 11 3041475 3041475 G A CARS Missense_Mutation p.P414L 0.44 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 30930601 30930601 T C DCDC1 Silent p.K1270K 0.20 TCGA-AZ-4315-01 11 31648676 31648676 A G ELP4 Missense_Mutation p.T225A 0.30 tolerated(0.92) benign(0.002) TCGA-AZ-4315-01 11 31815003 31815003 T C PAX6 Missense_Mutation p.N353D 0.20 tolerated(0.06) benign(0.254) TCGA-AZ-4315-01 11 32623965 32623965 T G EIF3M 3'UTR 0.41 TCGA-AZ-4315-01 11 32637419 32637419 T C CCDC73 Intron 0.30 TCGA-AZ-4315-01 11 32657376 32657376 C T CCDC73 Missense_Mutation p.A351T 0.31 tolerated(0.25) benign(0.047) TCGA-AZ-4315-01 11 32739685 32739685 T G CCDC73 Missense_Mutation p.E48D 0.40 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 11 32998268 32998268 G C QSER1 3'UTR 0.54 TCGA-AZ-4315-01 11 33572673 33572673 G A KIAA1549L Missense_Mutation p.E900K 0.35 deleterious(0.01) possibly_damaging(0.621) TCGA-AZ-4315-01 11 34121117 34121117 T C CAPRIN1 3'UTR 0.31 TCGA-AZ-4315-01 11 34501694 34501694 C T ELF5 3'UTR 0.29 TCGA-AZ-4315-01 11 34501772 34501772 T G ELF5 Missense_Mutation p.K264T 0.25 deleterious(0.01) benign(0.163) TCGA-AZ-4315-01 11 35218413 35218413 A G CD44 Missense_Mutation p.Q263R 0.32 tolerated(0.75) benign(0.006) TCGA-AZ-4315-01 11 35457601 35457601 G A PAMR1 Missense_Mutation p.P412S 0.33 tolerated(0.18) probably_damaging(0.976) TCGA-AZ-4315-01 11 36248848 36248848 T C LDLRAD3 Missense_Mutation p.L223P 0.30 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AZ-4315-01 11 36595417 36595417 G A RAG1 Missense_Mutation p.S188N 0.41 tolerated_low_confidence(0.22) benign(0.021) TCGA-AZ-4315-01 11 36596344 36596344 G A RAG1 Missense_Mutation p.R497K 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.815) TCGA-AZ-4315-01 11 36597893 36597893 A C RAG1 Missense_Mutation p.K1013N 0.23 deleterious_low_confidence(0) benign(0.06) TCGA-AZ-4315-01 11 36599272 36599272 A C RAG1 3'UTR 0.37 TCGA-AZ-4315-01 11 36600536 36600536 G A RAG1 3'UTR 0.27 TCGA-AZ-4315-01 11 3661421 3661421 G A ART5 Nonsense_Mutation p.R80* 0.44 TCGA-AZ-4315-01 11 36614690 36614690 G T RAG2 Missense_Mutation p.F343L 0.34 tolerated(0.6) probably_damaging(0.994) TCGA-AZ-4315-01 11 43284460 43284460 C A HNRNPKP3 RNA 0.33 TCGA-AZ-4315-01 11 43511807 43511807 C A TTC17 Missense_Mutation p.L1017I 0.12 deleterious(0.05) probably_damaging(0.996) TCGA-AZ-4315-01 11 44074224 44074224 T C ACCSL Missense_Mutation p.V262A 0.28 deleterious(0) possibly_damaging(0.582) TCGA-AZ-4315-01 11 4470871 4470871 C T OR52K2 Missense_Mutation p.A101V 0.32 tolerated(0.37) benign(0) TCGA-AZ-4315-01 11 45265640 45265640 C T SYT13 Missense_Mutation p.R415H 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 4566611 4566611 T C OR52M1 Missense_Mutation p.F64S 0.17 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 11 4567357 4567357 G A OR52M1 Missense_Mutation p.E313K 0.22 tolerated(0.86) benign(0.001) TCGA-AZ-4315-01 11 45882547 45882547 G A CRY2 Missense_Mutation p.D227N 0.30 tolerated(0.05) benign(0.009) TCGA-AZ-4315-01 11 45924288 45924288 C T MAPK8IP1 Missense_Mutation p.R324W 0.43 deleterious(0) possibly_damaging(0.846) TCGA-AZ-4315-01 11 4592682 4592682 C T C11orf40 Missense_Mutation p.D209N 0.28 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-AZ-4315-01 11 46529745 46529745 A C AMBRA1 Missense_Mutation p.F689V 0.43 tolerated_low_confidence(0.05) benign(0.168) TCGA-AZ-4315-01 11 46637285 46637285 C T HARBI1 Missense_Mutation p.R168Q 0.32 tolerated(0.05) possibly_damaging(0.617) TCGA-AZ-4315-01 11 46690060 46690060 G A ATG13 Silent p.T421T 0.28 TCGA-AZ-4315-01 11 46727268 46727268 T G ZNF408 Missense_Mutation p.V673G 0.25 deleterious(0) possibly_damaging(0.694) TCGA-AZ-4315-01 11 4675371 4675371 G A OR51E1 3'UTR 0.28 TCGA-AZ-4315-01 11 47297655 47297655 C T MADD Nonsense_Mutation p.R289* 0.31 TCGA-AZ-4315-01 11 47307015 47307015 C A MADD Missense_Mutation p.L809M 0.38 tolerated_low_confidence(0.09) probably_damaging(0.958) TCGA-AZ-4315-01 11 47311028 47311028 C T MADD Nonsense_Mutation p.R934* 0.36 TCGA-AZ-4315-01 11 47447893 47447893 C A PSMC3 5'UTR 0.27 TCGA-AZ-4315-01 11 47652601 47652601 C A MTCH2 Nonsense_Mutation p.E156* 0.37 TCGA-AZ-4315-01 11 47688556 47688556 C A AGBL2 Missense_Mutation p.E800D 0.28 deleterious_low_confidence(0.05) possibly_damaging(0.622) TCGA-AZ-4315-01 11 48285668 48285668 A G OR4X1 Missense_Mutation p.K86E 0.30 tolerated(1) benign(0.001) TCGA-AZ-4315-01 11 4869555 4869555 T C OR51S1 Missense_Mutation p.N295S 0.25 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 11 4869964 4869964 G A OR51S1 Nonsense_Mutation p.R159* 0.34 TCGA-AZ-4315-01 11 4903911 4903911 C A OR51T1 Missense_Mutation p.S288Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 49190808 49190808 C A FOLH1 Missense_Mutation p.E437D 0.28 tolerated(0.14) benign(0.02) TCGA-AZ-4315-01 11 4945071 4945071 G A OR51G1 Missense_Mutation p.R167C 0.38 deleterious(0.01) benign(0.077) TCGA-AZ-4315-01 11 5012693 5012693 G T MMP26 Missense_Mutation p.D188Y 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 11 5080283 5080283 G A OR52E2 Missense_Mutation p.A192V 0.34 tolerated(0.06) benign(0.409) TCGA-AZ-4315-01 11 51411990 51411990 G A OR4A5 Nonsense_Mutation p.R136* 0.32 TCGA-AZ-4315-01 11 5153489 5153489 G T OR52A5 Silent p.I128I 0.31 TCGA-AZ-4315-01 11 5255348 5255348 G A HBD Missense_Mutation p.A63V 0.32 deleterious(0.01) benign(0.368) TCGA-AZ-4315-01 11 5364399 5364399 T G OR51B5 Missense_Mutation p.D119A 0.26 deleterious(0) probably_damaging(0.97) TCGA-AZ-4315-01 11 5373171 5373171 G A OR51B6 Missense_Mutation p.R145Q 0.36 deleterious(0.01) benign(0.006) TCGA-AZ-4315-01 11 5411474 5411474 T C OR51M1 Silent p.P282P 0.24 TCGA-AZ-4315-01 11 5475036 5475036 C A OR51I2 Missense_Mutation p.F106L 0.31 tolerated(0.78) benign(0) TCGA-AZ-4315-01 11 55029786 55029786 C T TRIM48 Nonsense_Mutation p.R15* 0.32 TCGA-AZ-4315-01 11 55036795 55036795 A G TRIM48 Missense_Mutation p.D219G 0.50 deleterious(0.04) benign(0.242) TCGA-AZ-4315-01 11 5510464 5510464 C A OR52D1 Silent p.V176V 0.32 TCGA-AZ-4315-01 11 552569 552569 C T LRRC56 Silent p.R394R 0.26 TCGA-AZ-4315-01 11 5529314 5529314 T C UBQLN3 Missense_Mutation p.N492S 0.32 tolerated(0.18) benign(0.006) TCGA-AZ-4315-01 11 55322874 55322874 G T OR4C15 Missense_Mutation p.E364D 0.28 tolerated_low_confidence(0.19) benign(0.001) TCGA-AZ-4315-01 11 5536058 5536058 G A UBQLNL 3'UTR 0.33 TCGA-AZ-4315-01 11 55432709 55432709 A G OR4C6 Missense_Mutation p.K23E 0.37 deleterious_low_confidence(0.01) benign(0.125) TCGA-AZ-4315-01 11 55541012 55541012 C T OR5D13 Silent p.F33F 0.27 TCGA-AZ-4315-01 11 55587848 55587848 C T OR5D18 Missense_Mutation p.A248V 0.30 deleterious(0.05) benign(0.047) TCGA-AZ-4315-01 11 55655682 55655682 G T TRIM51 Nonsense_Mutation p.G228* 0.27 TCGA-AZ-4315-01 11 5566459 5566459 C T OR52H1 Missense_Mutation p.E99K 0.42 tolerated(0.11) benign(0.002) TCGA-AZ-4315-01 11 55681756 55681756 G T OR5W2 Missense_Mutation p.F101L 0.37 tolerated(0.3) benign(0.005) TCGA-AZ-4315-01 11 55703498 55703498 C T OR5I1 Missense_Mutation p.A127T 0.36 deleterious(0.01) benign(0.008) TCGA-AZ-4315-01 11 55703611 55703611 G A OR5I1 Missense_Mutation p.S89L 0.38 tolerated(0.07) benign(0.096) TCGA-AZ-4315-01 11 55735175 55735175 T C OR10AG1 Silent p.P255P 0.17 TCGA-AZ-4315-01 11 55735359 55735359 G A OR10AG1 Missense_Mutation p.A194V 0.36 tolerated(0.19) benign(0.191) TCGA-AZ-4315-01 11 55735875 55735875 A C OR10AG1 Missense_Mutation p.F22C 0.35 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 11 55761918 55761918 A C OR5F1 Missense_Mutation p.F62V 0.32 deleterious(0) possibly_damaging(0.792) TCGA-AZ-4315-01 11 55798357 55798357 A G OR5AS1 Missense_Mutation p.T155A 0.31 deleterious(0.05) possibly_damaging(0.78) TCGA-AZ-4315-01 11 55873104 55873104 G A OR8H2 Missense_Mutation p.E196K 0.38 deleterious(0.02) probably_damaging(0.974) TCGA-AZ-4315-01 11 55904865 55904865 C T OR8J3 Silent p.S110S 0.36 TCGA-AZ-4315-01 11 55944494 55944494 T C OR5J2 Missense_Mutation p.V134A 0.30 tolerated(0.17) benign(0.018) TCGA-AZ-4315-01 11 55999625 55999625 T G OR5T2 Missense_Mutation p.K346T 0.29 deleterious(0.05) benign(0.022) TCGA-AZ-4315-01 11 56020317 56020317 C T OR5T3 Silent p.L214L 0.32 TCGA-AZ-4315-01 11 56020329 56020329 T G OR5T3 Silent p.S218S 0.35 TCGA-AZ-4315-01 11 5602294 5602294 G A OR52B6 Missense_Mutation p.G63D 0.31 tolerated(0.21) possibly_damaging(0.476) TCGA-AZ-4315-01 11 5602717 5602717 C T OR52B6 Missense_Mutation p.A204V 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-AZ-4315-01 11 56043861 56043861 C A OR5T1 Silent p.V249V 0.36 TCGA-AZ-4315-01 11 56058093 56058093 A G OR8H1 Missense_Mutation p.V149A 0.39 tolerated(0.3) benign(0.008) TCGA-AZ-4315-01 11 56143277 56143277 T C OR8U1 Missense_Mutation p.Y60H 0.28 deleterious(0) probably_damaging(0.958) TCGA-AZ-4315-01 11 56409116 56409116 C T OR5AP2 Missense_Mutation p.R267H 0.34 deleterious(0.04) benign(0.081) TCGA-AZ-4315-01 11 56468005 56468005 A G OR9G1 Missense_Mutation p.I48V 0.13 tolerated(0.08) benign(0.135) TCGA-AZ-4315-01 11 56949699 56949699 G A LRRC55 Missense_Mutation p.R111Q 0.30 tolerated(0.05) benign(0.154) TCGA-AZ-4315-01 11 56954756 56954756 C T LRRC55 Silent p.V276V 0.37 TCGA-AZ-4315-01 11 57068427 57068427 G A TNKS1BP1 Missense_Mutation p.S1687L 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 11 57087587 57087587 A G TNKS1BP1 Missense_Mutation p.C232R 0.25 deleterious(0.02) possibly_damaging(0.483) TCGA-AZ-4315-01 11 57137503 57137503 C T P2RX3 3'UTR 0.35 TCGA-AZ-4315-01 11 57182167 57182167 G A SLC43A3 Silent p.F327F 0.31 TCGA-AZ-4315-01 11 57256823 57256823 C A SLC43A1 Missense_Mutation p.K412N 0.24 deleterious(0) possibly_damaging(0.483) TCGA-AZ-4315-01 11 5730620 5730620 G T TRIM22 Missense_Mutation p.Q413H 0.36 tolerated(0.08) probably_damaging(0.981) TCGA-AZ-4315-01 11 57471946 57471946 A G MED19 3'UTR 0.33 TCGA-AZ-4315-01 11 57564253 57564253 C T CTNND1 Missense_Mutation p.R249W 0.33 deleterious(0) probably_damaging(0.981) TCGA-AZ-4315-01 11 57571138 57571138 T G CTNND1 Missense_Mutation p.I489S 0.31 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 11 5776043 5776043 A G OR52N4 Missense_Mutation p.T25A 0.26 tolerated(1) benign(0.003) TCGA-AZ-4315-01 11 5776828 5776828 A G OR52N4 Silent p.L286L 0.28 TCGA-AZ-4315-01 11 57948460 57948460 C T OR9Q1 3'UTR 0.32 TCGA-AZ-4315-01 11 57948969 57948970 - T OR9Q1 3'UTR 0.29 TCGA-AZ-4315-01 11 57948991 57948991 T G OR9Q1 3'UTR 0.41 TCGA-AZ-4315-01 11 57996244 57996244 A G OR10Q1 Missense_Mutation p.F35S 0.32 deleterious(0) probably_damaging(0.939) TCGA-AZ-4315-01 11 58034949 58034949 T C OR10W1 Missense_Mutation p.T128A 0.26 deleterious(0.01) benign(0.188) TCGA-AZ-4315-01 11 58126112 58126112 A G OR5B17 Missense_Mutation p.I144T 0.41 tolerated_low_confidence(0.29) benign(0.219) TCGA-AZ-4315-01 11 58126158 58126158 G A OR5B17 Missense_Mutation p.H129Y 0.27 deleterious_low_confidence(0.04) benign(0.261) TCGA-AZ-4315-01 11 58170524 58170524 C T OR5B3 Missense_Mutation p.R120H 0.33 deleterious_low_confidence(0.04) benign(0.152) TCGA-AZ-4315-01 11 58189926 58189926 T G OR5B2 Missense_Mutation p.K270T 0.35 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AZ-4315-01 11 58190249 58190249 G T OR5B2 Missense_Mutation p.F162L 0.32 deleterious_low_confidence(0.03) benign(0.14) TCGA-AZ-4315-01 11 58190337 58190337 G A OR5B2 Missense_Mutation p.T133I 0.10 tolerated_low_confidence(0.16) benign(0.014) TCGA-AZ-4315-01 11 58652473 58652473 C T GLYATL1P2 RNA 0.42 TCGA-AZ-4315-01 11 59132013 59132013 C T OR5AN1 Missense_Mutation p.L28F 0.37 deleterious(0.04) possibly_damaging(0.557) TCGA-AZ-4315-01 11 59211583 59211583 T G OR5A1 Missense_Mutation p.F314L 0.39 tolerated(0.17) benign(0.001) TCGA-AZ-4315-01 11 59245089 59245089 C T OR4D10 Missense_Mutation p.L63F 0.31 deleterious(0.01) probably_damaging(0.962) TCGA-AZ-4315-01 11 59271896 59271896 A G OR4D11 Missense_Mutation p.N283S 0.38 deleterious(0.01) possibly_damaging(0.606) TCGA-AZ-4315-01 11 59480653 59480653 G A OR10V1 Silent p.I222I 0.40 TCGA-AZ-4315-01 11 59609989 59609989 G T GIF Missense_Mutation p.N146K 0.43 deleterious(0.04) possibly_damaging(0.448) TCGA-AZ-4315-01 11 59623449 59623449 G T TCN1 Missense_Mutation p.S277Y 0.12 deleterious(0.04) possibly_damaging(0.851) TCGA-AZ-4315-01 11 59629149 59629149 T C TCN1 Missense_Mutation p.H136R 0.26 deleterious(0.02) probably_damaging(0.983) TCGA-AZ-4315-01 11 59807827 59807827 G A OOSP2 5'UTR 0.78 TCGA-AZ-4315-01 11 59829977 59829977 T G MS4A3 Missense_Mutation p.L65V 0.34 tolerated(0.12) possibly_damaging(0.75) TCGA-AZ-4315-01 11 60064681 60064681 T G MS4A4A Missense_Mutation p.I71M 0.47 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 60161324 60161324 C A MS4A7 Missense_Mutation p.S238Y 0.24 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-AZ-4315-01 11 601665 601665 A G PHRF1 Silent p.Q372Q 0.31 TCGA-AZ-4315-01 11 60264815 60264815 C T MS4A12 Silent p.S8S 0.43 TCGA-AZ-4315-01 11 6048455 6048455 C T OR56A1 Silent p.A160A 0.32 TCGA-AZ-4315-01 11 60541337 60541337 C T MS4A15 Missense_Mutation p.L176F 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 11 60687215 60687215 C T TMEM109 Missense_Mutation p.A17V 0.35 tolerated_low_confidence(0.7) benign(0.004) TCGA-AZ-4315-01 11 60696363 60696363 G A TMEM132A Missense_Mutation p.R266Q 0.22 deleterious(0.04) benign(0.086) TCGA-AZ-4315-01 11 60714199 60714199 G A SLC15A3 Missense_Mutation p.A218V 0.22 deleterious(0) probably_damaging(0.941) TCGA-AZ-4315-01 11 60780933 60780933 C T CD6 Missense_Mutation p.R397W 0.36 deleterious(0.04) benign(0.022) TCGA-AZ-4315-01 11 60889141 60889141 C T CD5 Silent p.T288T 0.32 TCGA-AZ-4315-01 11 61099102 61099102 G A DDB1 Silent p.I41I 0.35 TCGA-AZ-4315-01 11 61136173 61136173 C T TMEM138 Nonsense_Mutation p.R161* 0.30 TCGA-AZ-4315-01 11 61249785 61249785 C T PPP1R32 Missense_Mutation p.R38W 0.27 tolerated(0.11) probably_damaging(0.956) TCGA-AZ-4315-01 11 61253293 61253293 C T PPP1R32 Silent p.I199I 0.28 TCGA-AZ-4315-01 11 61596011 61596011 C T FADS2 Missense_Mutation p.S50F 0.30 tolerated(0.06) benign(0.361) TCGA-AZ-4315-01 11 62286496 62286496 G A AHNAK Silent p.V5131V 0.29 TCGA-AZ-4315-01 11 62293378 62293378 C T AHNAK Missense_Mutation p.M2837I 0.29 benign(0.299) TCGA-AZ-4315-01 11 62293387 62293387 C A AHNAK Missense_Mutation p.K2834N 0.28 benign(0.003) TCGA-AZ-4315-01 11 62298461 62298461 C T AHNAK Missense_Mutation p.G1143D 0.30 probably_damaging(0.976) TCGA-AZ-4315-01 11 62378459 62378459 C T EML3 Missense_Mutation p.R153Q 0.54 tolerated(0.06) benign(0.323) TCGA-AZ-4315-01 11 62393336 62393336 C T GANAB Missense_Mutation p.R951H 0.44 deleterious(0.02) probably_damaging(0.996) TCGA-AZ-4315-01 11 6244860 6244860 C T FAM160A2 Missense_Mutation p.D253N 0.31 deleterious(0.02) possibly_damaging(0.677) TCGA-AZ-4315-01 11 6261890 6261890 A G CNGA4 Missense_Mutation p.Y289C 0.15 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 62656110 62656110 G A SLC3A2 Missense_Mutation p.R614H 0.38 tolerated(0.44) benign(0) TCGA-AZ-4315-01 11 62751070 62751070 G A SLC22A6 Silent p.C189C 0.41 TCGA-AZ-4315-01 11 62782103 62782103 T C SLC22A8 Missense_Mutation p.T110A 0.21 deleterious(0.01) benign(0.094) TCGA-AZ-4315-01 11 62863509 62863509 G A SLC22A24 Missense_Mutation p.R342C 0.37 tolerated(0.14) benign(0.255) TCGA-AZ-4315-01 11 63662682 63662682 C T MARK2 Missense_Mutation p.R36W 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 63666083 63666083 A C MARK2 Missense_Mutation p.K114T 0.37 deleterious(0) possibly_damaging(0.889) TCGA-AZ-4315-01 11 63668463 63668463 G T MARK2 Missense_Mutation p.E341D 0.34 tolerated(0.22) probably_damaging(0.984) TCGA-AZ-4315-01 11 64067800 64067800 G A KCNK4 3'Flank 0.41 TCGA-AZ-4315-01 11 6414911 6414911 G A SMPD1 Missense_Mutation p.R443Q 0.35 tolerated(0.12) possibly_damaging(0.601) TCGA-AZ-4315-01 11 6417023 6417023 G A APBB1 Missense_Mutation p.A651V 0.22 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 11 64360938 64360938 G A SLC22A12 Missense_Mutation p.A190T 0.31 tolerated(0.91) benign(0.097) TCGA-AZ-4315-01 11 64367324 64367324 C T SLC22A12 Missense_Mutation p.A416V 0.36 tolerated(0.07) possibly_damaging(0.608) TCGA-AZ-4315-01 11 64367925 64367925 G A SLC22A12 Missense_Mutation p.E458K 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 11 64375325 64375325 G T NRXN2 Silent p.G1494G 0.30 TCGA-AZ-4315-01 11 64453379 64453379 G T NRXN2 Missense_Mutation p.F297L 0.29 tolerated(0.11) benign(0) TCGA-AZ-4315-01 11 64697809 64697809 C T PPP2R5B Silent p.F246F 0.23 TCGA-AZ-4315-01 11 64789215 64789215 G A ARL2 Missense_Mutation p.R148H 0.36 deleterious(0.04) benign(0) TCGA-AZ-4315-01 11 64822123 64822123 C T NAALADL1 Missense_Mutation p.E231K 0.42 deleterious(0.01) benign(0.045) TCGA-AZ-4315-01 11 65009546 65009546 G T SLC22A20 RNA 0.38 TCGA-AZ-4315-01 11 65123383 65123383 C T TIGD3 Missense_Mutation p.A35V 0.23 deleterious(0) probably_damaging(0.941) TCGA-AZ-4315-01 11 65154594 65154594 T C FRMD8 Splice_Site p.X29_splice 0.42 TCGA-AZ-4315-01 11 65294321 65294321 G A SCYL1 Missense_Mutation p.A224T 0.17 tolerated(0.19) benign(0.001) TCGA-AZ-4315-01 11 65315031 65315031 G A LTBP3 Silent p.N662N 0.21 TCGA-AZ-4315-01 11 65391791 65391791 G A PCNXL3 Silent p.T890T 0.21 TCGA-AZ-4315-01 11 65554735 65554735 C T OVOL1 5'UTR 0.25 TCGA-AZ-4315-01 11 65618810 65618810 G A SNX32 Missense_Mutation p.D241N 0.56 tolerated(0.24) benign(0.011) TCGA-AZ-4315-01 11 65688886 65688886 G A DRAP1 Missense_Mutation p.E200K 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-AZ-4315-01 11 65786311 65786311 T C CATSPER1 Missense_Mutation p.T730A 0.36 tolerated(0.34) benign(0.032) TCGA-AZ-4315-01 11 6584676 6584676 G A DNHD1 Missense_Mutation p.S3245N 0.44 probably_damaging(1) TCGA-AZ-4315-01 11 6588997 6588997 G T DNHD1 Missense_Mutation p.Q4086H 0.29 probably_damaging(0.937) TCGA-AZ-4315-01 11 66061978 66061978 G A TMEM151A Silent p.P87P 0.28 TCGA-AZ-4315-01 11 66082432 66082432 C A CD248 Silent p.V689V 0.34 TCGA-AZ-4315-01 11 66190695 66190695 A G NPAS4 Missense_Mutation p.Y267C 0.36 tolerated(0.18) benign(0.051) TCGA-AZ-4315-01 11 66191454 66191454 G A NPAS4 Missense_Mutation p.A365T 0.30 deleterious(0.01) benign(0) TCGA-AZ-4315-01 11 66192038 66192038 G T NPAS4 Missense_Mutation p.K559N 0.34 tolerated_low_confidence(0.14) possibly_damaging(0.554) TCGA-AZ-4315-01 11 66323644 66323644 G A CTD-3074O7.2 3'Flank 0.42 TCGA-AZ-4315-01 11 66325263 66325263 C T CTD-3074O7.2 3'Flank 0.21 TCGA-AZ-4315-01 11 66325508 66325508 A C CTD-3074O7.2 3'Flank 0.31 TCGA-AZ-4315-01 11 66333149 66333149 C A CTSF Missense_Mutation p.K346N 0.39 deleterious(0.05) possibly_damaging(0.807) TCGA-AZ-4315-01 11 66357969 66357969 T C CCDC87 Missense_Mutation p.T840A 0.42 tolerated(1) benign(0.001) TCGA-AZ-4315-01 11 66359955 66359955 C T CCDC87 Missense_Mutation p.D178N 0.52 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 66360098 66360098 C T CCDC87 Missense_Mutation p.R130H 0.38 tolerated(0.52) benign(0.15) TCGA-AZ-4315-01 11 66407111 66407111 C A RBM4 5'UTR 0.38 TCGA-AZ-4315-01 11 66453394 66453394 C T SPTBN2 Missense_Mutation p.G2374D 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 11 66807615 66807615 G A SYT12 Missense_Mutation p.E188K 0.33 tolerated(0.63) benign(0.069) TCGA-AZ-4315-01 11 67051378 67051378 C T ADRBK1 Silent p.F483F 0.33 TCGA-AZ-4315-01 11 67837723 67837723 C T CHKA Missense_Mutation p.E268K 0.34 tolerated(0.1) probably_damaging(0.951) TCGA-AZ-4315-01 11 6789409 6789409 G T OR2AG2 Silent p.V260V 0.35 TCGA-AZ-4315-01 11 68514770 68514770 T G MTL5 Missense_Mutation p.N179T 0.39 tolerated(0.06) benign(0.007) TCGA-AZ-4315-01 11 6867344 6867344 A G OR10A5 Missense_Mutation p.K144R 0.35 tolerated(0.18) benign(0.012) TCGA-AZ-4315-01 11 68821554 68821554 G T TPCN2 Missense_Mutation p.D55Y 0.25 deleterious(0) possibly_damaging(0.722) TCGA-AZ-4315-01 11 6897947 6897947 G A OR10A4 Silent p.E23E 0.27 TCGA-AZ-4315-01 11 6898588 6898588 A C OR10A4 Missense_Mutation p.Q237P 0.42 deleterious(0) benign(0.003) TCGA-AZ-4315-01 11 6942513 6942513 T C OR2D3 Missense_Mutation p.V94A 0.29 deleterious(0.03) possibly_damaging(0.493) TCGA-AZ-4315-01 11 6953810 6953810 G T ZNF215 Nonsense_Mutation p.E103* 0.27 TCGA-AZ-4315-01 11 6977106 6977106 G T ZNF215 Missense_Mutation p.D300Y 0.22 deleterious(0.03) possibly_damaging(0.708) TCGA-AZ-4315-01 11 70260753 70260753 G T CTTN Missense_Mutation p.D133Y 0.23 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 11 7064200 7064200 C G NLRP14 Missense_Mutation p.L315V 0.34 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 7111664 7111664 C T RBMXL2 3'UTR 0.36 TCGA-AZ-4315-01 11 71249975 71249975 A C KRTAP5-8 3'UTR 0.27 TCGA-AZ-4315-01 11 71250202 71250202 G A KRTAP5-8 3'UTR 0.33 TCGA-AZ-4315-01 11 71293680 71293680 G A KRTAP5-11 Silent p.G68G 0.26 TCGA-AZ-4315-01 11 71715795 71715795 C T NUMA1 Missense_Mutation p.R1966H 0.42 benign(0.043) TCGA-AZ-4315-01 11 71946423 71946423 A G INPPL1 Missense_Mutation p.T863A 0.31 deleterious(0.01) probably_damaging(0.917) TCGA-AZ-4315-01 11 721595 721595 G A EPS8L2 Missense_Mutation p.E267K 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 72289942 72289942 G A PDE2A Missense_Mutation p.A823V 0.23 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 11 72295764 72295764 C T PDE2A Silent p.E456E 0.23 TCGA-AZ-4315-01 11 72406645 72406645 C T ARAP1 Missense_Mutation p.R1150Q 0.20 tolerated(0.48) benign(0.007) TCGA-AZ-4315-01 11 72421439 72421439 C A ARAP1 Missense_Mutation p.K469N 0.30 deleterious(0) benign(0.081) TCGA-AZ-4315-01 11 72560905 72560905 G A FCHSD2 Silent p.G446G 0.24 TCGA-AZ-4315-01 11 726325 726325 A G EPS8L2 Missense_Mutation p.E592G 0.34 deleterious(0.01) possibly_damaging(0.756) TCGA-AZ-4315-01 11 72712059 72712059 G A FCHSD2 Silent p.S121S 0.22 TCGA-AZ-4315-01 11 73068164 73068164 G A ARHGEF17 Missense_Mutation p.R1329H 0.34 deleterious(0.03) probably_damaging(0.992) TCGA-AZ-4315-01 11 73584332 73584332 C T COA4 Missense_Mutation p.R31H 0.36 tolerated(0.15) possibly_damaging(0.902) TCGA-AZ-4315-01 11 73620530 73620530 C T PAAF1 Missense_Mutation p.R207C 0.28 deleterious(0.01) possibly_damaging(0.65) TCGA-AZ-4315-01 11 74315766 74315766 G A POLD3 Missense_Mutation p.R49Q 0.28 tolerated(0.08) benign(0.105) TCGA-AZ-4315-01 11 74329760 74329760 G T POLD3 Nonsense_Mutation p.G191* 0.35 TCGA-AZ-4315-01 11 74563071 74563071 G A XRRA1 Silent p.F401F 0.23 TCGA-AZ-4315-01 11 75316696 75316696 G T MAP6 Intron 0.33 TCGA-AZ-4315-01 11 75719856 75719856 A G UVRAG Silent p.E335E 0.27 TCGA-AZ-4315-01 11 75905692 75905692 G A WNT11 Silent p.S172S 0.37 TCGA-AZ-4315-01 11 76063235 76063235 A C PRKRIR Nonsense_Mutation p.L320* 0.35 TCGA-AZ-4315-01 11 76261044 76261044 G T C11orf30 Missense_Mutation p.V1275L 0.33 deleterious_low_confidence(0) possibly_damaging(0.785) TCGA-AZ-4315-01 11 77047314 77047314 G T PAK1 Missense_Mutation p.F410L 0.29 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 11 7716874 7716874 G A OVCH2 Silent p.F403F 0.38 TCGA-AZ-4315-01 11 7723301 7723301 A C OVCH2 Missense_Mutation p.F174C 0.40 tolerated(0.06) probably_damaging(0.944) TCGA-AZ-4315-01 11 77336029 77336029 C A CLNS1A Nonsense_Mutation p.E151* 0.36 TCGA-AZ-4315-01 11 77377838 77377838 A C RSF1 3'UTR 0.26 TCGA-AZ-4315-01 11 77394832 77394832 C A RSF1 Missense_Mutation p.K996N 0.33 deleterious(0.03) benign(0.103) TCGA-AZ-4315-01 11 77618837 77618837 C A INTS4 Nonsense_Mutation p.E648* 0.23 TCGA-AZ-4315-01 11 77817977 77817977 G T ALG8 Missense_Mutation p.L352I 0.18 tolerated(0.2) possibly_damaging(0.498) TCGA-AZ-4315-01 11 77835225 77835225 G T ALG8 Missense_Mutation p.F70L 0.37 tolerated(0.7) benign(0.024) TCGA-AZ-4315-01 11 77919923 77919923 G T USP35 Missense_Mutation p.E502D 0.67 tolerated(0.33) unknown(0) TCGA-AZ-4315-01 11 77920730 77920730 G A USP35 Missense_Mutation p.R610H 0.27 tolerated(0.24) unknown(0) TCGA-AZ-4315-01 11 77921275 77921275 G A USP35 Missense_Mutation p.E792K 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 11 78380132 78380132 C A TENM4 Missense_Mutation p.D2420Y 0.36 deleterious(0) possibly_damaging(0.873) TCGA-AZ-4315-01 11 78380492 78380492 C T TENM4 Missense_Mutation p.V2300M 0.34 deleterious(0) possibly_damaging(0.884) TCGA-AZ-4315-01 11 78383338 78383338 G A TENM4 Missense_Mutation p.R1845C 0.33 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 11 78412982 78412982 C T TENM4 Missense_Mutation p.R1559Q 0.31 deleterious(0.01) benign(0.086) TCGA-AZ-4315-01 11 7847368 7847368 C T OR5P3 Missense_Mutation p.R51K 0.32 tolerated(0.25) benign(0.002) TCGA-AZ-4315-01 11 78780907 78780907 T C TENM4 Missense_Mutation p.D28G 0.32 deleterious_low_confidence(0.04) benign(0.005) TCGA-AZ-4315-01 11 7981449 7981449 A C NLRP10 Silent p.A570A 0.31 TCGA-AZ-4315-01 11 8161528 8161528 A G RIC3 Missense_Mutation p.Y113H 0.30 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 11 82535920 82535920 G T PRCP 3'UTR 0.24 TCGA-AZ-4315-01 11 82564262 82564262 C T PRCP Missense_Mutation p.R144Q 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 11 83177851 83177851 A G DLG2 Missense_Mutation p.C877R 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 11 83676425 83676425 A G DLG2 Silent p.V381V 0.28 TCGA-AZ-4315-01 11 84027940 84027940 C T DLG2 Intron 0.33 TCGA-AZ-4315-01 11 840408 840408 G A POLR2L Silent p.I56I 0.22 TCGA-AZ-4315-01 11 85396335 85396335 A C CCDC89 Missense_Mutation p.I280S 0.38 deleterious(0) benign(0.001) TCGA-AZ-4315-01 11 85435748 85435748 T C SYTL2 Silent p.V584V 0.34 TCGA-AZ-4315-01 11 85445349 85445349 C T SYTL2 Silent p.E340E 0.32 TCGA-AZ-4315-01 11 85714467 85714467 C T PICALM Missense_Mutation p.E279K 0.30 deleterious(0) possibly_damaging(0.892) TCGA-AZ-4315-01 11 86103690 86103690 C T CCDC81 Missense_Mutation p.R136C 0.32 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 11 86120391 86120391 A C CCDC81 Missense_Mutation p.E401A 0.34 tolerated(0.15) benign(0.084) TCGA-AZ-4315-01 11 86152471 86152471 G A ME3 Silent p.Y555Y 0.35 TCGA-AZ-4315-01 11 86176146 86176146 A G ME3 Silent p.N302N 0.29 TCGA-AZ-4315-01 11 86176206 86176206 G A ME3 Silent p.F282F 0.32 TCGA-AZ-4315-01 11 86521690 86521690 A T PRSS23 3'UTR 0.30 TCGA-AZ-4315-01 11 86521878 86521878 A C PRSS23 3'UTR 0.30 TCGA-AZ-4315-01 11 87032385 87032385 T C TMEM135 3'UTR 0.29 TCGA-AZ-4315-01 11 89177310 89177310 C T NOX4 Missense_Mutation p.R147Q 0.25 tolerated(0.31) benign(0.006) TCGA-AZ-4315-01 11 89424638 89424638 A C FOLH1B RNA 0.40 TCGA-AZ-4315-01 11 89537623 89537623 G T TRIM49 Silent p.I5I 0.31 TCGA-AZ-4315-01 11 89774259 89774259 C A TRIM49C Silent p.I300I 0.61 TCGA-AZ-4315-01 11 89774516 89774516 A G TRIM49C Missense_Mutation p.D386G 0.54 tolerated(0.14) benign(0.007) TCGA-AZ-4315-01 11 89916133 89916133 G A NAALAD2 Missense_Mutation p.A664T 0.24 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 11 89935622 89935622 A G CHORDC1 Missense_Mutation p.L317P 0.31 tolerated(0.12) benign(0.18) TCGA-AZ-4315-01 11 89956149 89956149 G A CHORDC1 5'UTR 0.23 TCGA-AZ-4315-01 11 9042586 9042586 G A SCUBE2 3'UTR 0.18 TCGA-AZ-4315-01 11 9069079 9069079 C T SCUBE2 Missense_Mutation p.R609Q 0.29 deleterious(0.03) benign(0.022) TCGA-AZ-4315-01 11 92085597 92085597 A C FAT3 Missense_Mutation p.I107L 0.42 benign(0.217) TCGA-AZ-4315-01 11 92088379 92088379 T C FAT3 Missense_Mutation p.V1034A 0.24 probably_damaging(0.997) TCGA-AZ-4315-01 11 92430582 92430582 C T FAT3 Nonsense_Mutation p.R1214* 0.26 TCGA-AZ-4315-01 11 92531224 92531224 A C FAT3 Missense_Mutation p.E1682A 0.31 probably_damaging(1) TCGA-AZ-4315-01 11 92533835 92533835 C A FAT3 Silent p.V2552V 0.30 TCGA-AZ-4315-01 11 92577131 92577131 C T FAT3 Missense_Mutation p.S3533F 0.33 probably_damaging(0.997) TCGA-AZ-4315-01 11 92577516 92577516 C T FAT3 Silent p.F3661F 0.35 TCGA-AZ-4315-01 11 92592426 92592426 C T FAT3 Nonsense_Mutation p.R3866* 0.33 TCGA-AZ-4315-01 11 92616149 92616149 G A FAT3 Missense_Mutation p.R4176H 0.34 possibly_damaging(0.868) TCGA-AZ-4315-01 11 92714732 92714732 G A MTNR1B Missense_Mutation p.A115T 0.35 tolerated(0.25) possibly_damaging(0.67) TCGA-AZ-4315-01 11 93127803 93127803 A C CCDC67 Missense_Mutation p.K407T 0.38 deleterious(0) probably_damaging(0.94) TCGA-AZ-4315-01 11 93431135 93431135 G A KIAA1731 Silent p.E1019E 0.33 TCGA-AZ-4315-01 11 93433159 93433159 T G KIAA1731 Missense_Mutation p.L1694R 0.51 deleterious(0.04) benign(0.025) TCGA-AZ-4315-01 11 93463062 93463062 G A KIAA1731 Missense_Mutation p.V2532M 0.25 tolerated(0.06) benign(0.202) TCGA-AZ-4315-01 11 93469312 93469312 A G TAF1D 3'UTR 0.25 TCGA-AZ-4315-01 11 93472452 93472452 C T TAF1D Missense_Mutation p.D7N 0.31 tolerated_low_confidence(0.16) benign(0.062) TCGA-AZ-4315-01 11 93480472 93480472 T G C11orf54 5'UTR 0.30 TCGA-AZ-4315-01 11 93494804 93494804 C A C11orf54 Missense_Mutation p.L250I 0.35 tolerated(0.36) benign(0.075) TCGA-AZ-4315-01 11 93554357 93554357 G A VSTM5 Missense_Mutation p.T75M 0.30 tolerated(0.16) benign(0.002) TCGA-AZ-4315-01 11 93796742 93796742 T G HEPHL1 Missense_Mutation p.Y162D 0.27 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 11 94134060 94134060 T C GPR83 Missense_Mutation p.I118M 0.26 tolerated(0.21) possibly_damaging(0.488) TCGA-AZ-4315-01 11 94533386 94533386 G A AMOTL1 Missense_Mutation p.E344K 0.38 tolerated(0.15) benign(0.073) TCGA-AZ-4315-01 11 94564662 94564662 G A AMOTL1 Missense_Mutation p.E535K 0.36 deleterious(0.01) benign(0.033) TCGA-AZ-4315-01 11 94602524 94602524 G A AMOTL1 Missense_Mutation p.E884K 0.32 tolerated(0.08) benign(0.254) TCGA-AZ-4315-01 11 94759436 94759436 C T KDM4E Silent p.L239L 0.24 TCGA-AZ-4315-01 11 94862121 94862121 G T ENDOD1 Missense_Mutation p.R294L 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 11 959448 959448 G T AP2A2 Nonsense_Mutation p.E27* 0.32 TCGA-AZ-4315-01 11 9598738 9598738 T G WEE1 Missense_Mutation p.S357A 0.27 deleterious(0) benign(0.003) TCGA-AZ-4315-01 11 96086788 96086788 A C CCDC82 3'UTR 0.20 TCGA-AZ-4315-01 11 99715940 99715940 G A CNTN5 Missense_Mutation p.A175T 0.29 tolerated(0.07) benign(0.015) TCGA-AZ-4315-01 11 9983647 9983647 G A SBF2 Missense_Mutation p.P573S 0.23 deleterious(0.02) probably_damaging(0.939) TCGA-AZ-4315-01 12 100042091 100042091 G A FAM71C Missense_Mutation p.E47K 0.29 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 12 100451456 100451456 C A UHRF1BP1L Missense_Mutation p.R1106I 0.37 deleterious(0) probably_damaging(0.954) TCGA-AZ-4315-01 12 100656045 100656045 C A DEPDC4 Nonsense_Mutation p.E233* 0.30 TCGA-AZ-4315-01 12 100685392 100685392 C T SCYL2 Nonsense_Mutation p.R97* 0.16 TCGA-AZ-4315-01 12 100904799 100904799 T C NR1H4 Missense_Mutation p.V118A 0.22 tolerated(0.54) benign(0.002) TCGA-AZ-4315-01 12 100926320 100926320 G T NR1H4 Missense_Mutation p.R187I 0.34 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 12 100930343 100930343 T G NR1H4 Missense_Mutation p.D272E 0.38 tolerated(1) benign(0.001) TCGA-AZ-4315-01 12 101514318 101514318 C T ANO4 Missense_Mutation p.P829L 0.26 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 12 101584384 101584384 A C SLC5A8 Missense_Mutation p.F232C 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 10167238 10167238 T C CLEC12B Missense_Mutation p.S103P 0.28 tolerated(1) benign(0.003) TCGA-AZ-4315-01 12 101682762 101682763 - A UTP20 Frame_Shift_Ins p.L183Tfs*9 0.24 TCGA-AZ-4315-01 12 101723087 101723087 C T UTP20 Missense_Mutation p.R1093C 0.26 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 12 101736761 101736761 G A UTP20 Missense_Mutation p.D1447N 0.30 deleterious(0.01) probably_damaging(0.956) TCGA-AZ-4315-01 12 102054961 102054961 G A MYBPC1 Silent p.P626P 0.32 TCGA-AZ-4315-01 12 10213833 10213833 A C CLEC9A Missense_Mutation p.K94Q 0.43 deleterious(0.04) benign(0.045) TCGA-AZ-4315-01 12 102158936 102158936 G A GNPTAB Nonsense_Mutation p.R587* 0.30 TCGA-AZ-4315-01 12 102559560 102559560 A G PARPBP Silent p.P240P 0.28 TCGA-AZ-4315-01 12 102569382 102569382 A C PARPBP Missense_Mutation p.N315H 0.37 deleterious(0.03) possibly_damaging(0.869) TCGA-AZ-4315-01 12 102869449 102869449 G A IGF1 Silent p.F64F 0.33 TCGA-AZ-4315-01 12 10321763 10321763 G T OLR1 Missense_Mutation p.L30I 0.15 tolerated(0.09) benign(0.174) TCGA-AZ-4315-01 12 103240685 103240685 T C PAH Silent p.E319E 0.46 TCGA-AZ-4315-01 12 10339154 10339154 C T TMEM52B Silent p.F71F 0.37 TCGA-AZ-4315-01 12 10342716 10342716 C T TMEM52B Nonsense_Mutation p.R157* 0.57 TCGA-AZ-4315-01 12 104044303 104044303 C T STAB2 Silent p.L402L 0.36 TCGA-AZ-4315-01 12 104044353 104044353 C A STAB2 Missense_Mutation p.F418L 0.24 tolerated(0.8) benign(0.011) TCGA-AZ-4315-01 12 104171514 104171514 C A NT5DC3 3'UTR 0.24 TCGA-AZ-4315-01 12 104326616 104326616 G T HSP90B1 Nonsense_Mutation p.E103* 0.32 TCGA-AZ-4315-01 12 104497010 104497010 C T HCFC2 Missense_Mutation p.R780W 0.36 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 12 10460580 10460580 C A KLRD1 5'UTR 0.34 TCGA-AZ-4315-01 12 104851194 104851194 A C CHST11 Missense_Mutation p.K2T 0.23 tolerated_low_confidence(0.05) benign(0.156) TCGA-AZ-4315-01 12 105151390 105151390 C T CHST11 Silent p.L290L 0.28 TCGA-AZ-4315-01 12 105151515 105151515 C T CHST11 Silent p.Y331Y 0.35 TCGA-AZ-4315-01 12 10539533 10539533 A G KLRK1 Silent p.C39C 0.21 TCGA-AZ-4315-01 12 105456794 105456794 T C ALDH1L2 Missense_Mutation p.T265A 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-AZ-4315-01 12 10562312 10562312 C T KLRC4 5'UTR 0.36 TCGA-AZ-4315-01 12 10601974 10601974 G A KLRC1 Silent p.G117G 0.34 TCGA-AZ-4315-01 12 107103204 107103204 C T RFX4 Silent p.F319F 0.37 TCGA-AZ-4315-01 12 107386813 107386813 A G CRY1 Silent p.S529S 0.27 TCGA-AZ-4315-01 12 108051289 108051289 C A BTBD11 Missense_Mutation p.L1037I 0.27 tolerated(0.31) probably_damaging(0.996) TCGA-AZ-4315-01 12 108169822 108169822 T G ASCL4 3'UTR 0.43 TCGA-AZ-4315-01 12 108685816 108685816 G A CMKLR1 Silent p.N308N 0.37 TCGA-AZ-4315-01 12 108931288 108931288 T C SART3 Missense_Mutation p.R429G 0.43 deleterious(0) probably_damaging(0.971) TCGA-AZ-4315-01 12 108985547 108985547 C T TMEM119 Missense_Mutation p.A205T 0.24 tolerated(0.46) benign(0.002) TCGA-AZ-4315-01 12 109016972 109016972 T C SELPLG Missense_Mutation p.D387G 0.26 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 12 109041035 109041035 C T CORO1C 3'UTR 0.19 TCGA-AZ-4315-01 12 109185710 109185710 A C SSH1 Intron 0.64 TCGA-AZ-4315-01 12 109186212 109186212 G A SSH1 Silent p.S581S 0.26 TCGA-AZ-4315-01 12 109286769 109286769 G T DAO Missense_Mutation p.R155M 0.25 deleterious(0) possibly_damaging(0.69) TCGA-AZ-4315-01 12 109313523 109313523 C T SVOP Missense_Mutation p.R334H 0.40 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 12 109519148 109519148 C T USP30 Nonsense_Mutation p.R244* 0.27 TCGA-AZ-4315-01 12 109530625 109530625 C T ALKBH2 5'UTR 0.28 TCGA-AZ-4315-01 12 10954790 10954790 T C TAS2R7 Missense_Mutation p.D127G 0.33 deleterious(0.02) possibly_damaging(0.665) TCGA-AZ-4315-01 12 10958960 10958960 G T TAS2R8 Missense_Mutation p.S207Y 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 12 109907390 109907390 C T KCTD10 Silent p.T49T 0.29 TCGA-AZ-4315-01 12 109936079 109936079 C T UBE3B Silent p.F287F 0.25 TCGA-AZ-4315-01 12 109972266 109972266 G A UBE3B Intron 0.67 TCGA-AZ-4315-01 12 110232288 110232288 C T TRPV4 Missense_Mutation p.R446H 0.26 deleterious(0.01) benign(0.117) TCGA-AZ-4315-01 12 110341817 110341817 G A TCHP Silent p.R88R 0.29 TCGA-AZ-4315-01 12 110352341 110352341 G A TCHP Missense_Mutation p.R410Q 0.34 tolerated(0.66) benign(0.023) TCGA-AZ-4315-01 12 110376210 110376210 C T GIT2 Missense_Mutation p.A660T 0.30 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 12 110449927 110449927 C T ANKRD13A Missense_Mutation p.R72C 0.27 tolerated(0.19) benign(0.004) TCGA-AZ-4315-01 12 110565297 110565297 C T IFT81 Missense_Mutation p.L38F 0.28 tolerated(0.07) possibly_damaging(0.515) TCGA-AZ-4315-01 12 11061157 11061157 A G TAS2R13 Silent p.C247C 0.27 TCGA-AZ-4315-01 12 11061200 11061200 A C TAS2R13 Missense_Mutation p.I233S 0.35 tolerated(0.26) benign(0.101) TCGA-AZ-4315-01 12 110618313 110618313 C T IFT81 Silent p.F425F 0.33 TCGA-AZ-4315-01 12 110890722 110890722 G A GPN3 3'UTR 0.55 TCGA-AZ-4315-01 12 110944471 110944471 G T RAD9B Missense_Mutation p.V121L 0.28 tolerated(0.18) benign(0.409) TCGA-AZ-4315-01 12 110983722 110983722 C T PPTC7 Missense_Mutation p.A189T 0.19 deleterious(0.02) possibly_damaging(0.728) TCGA-AZ-4315-01 12 111085594 111085594 C T TCTN1 Missense_Mutation p.A559V 0.24 tolerated(0.13) benign(0.013) TCGA-AZ-4315-01 12 111317805 111317805 C T CCDC63 Silent p.V195V 0.22 TCGA-AZ-4315-01 12 11138763 11138763 A C TAS2R50 Missense_Mutation p.S233A 0.36 deleterious(0.02) probably_damaging(0.988) TCGA-AZ-4315-01 12 111729321 111729321 C T CUX2 Missense_Mutation p.S134L 0.19 tolerated(0.34) benign(0.001) TCGA-AZ-4315-01 12 111779854 111779854 A G CUX2 Missense_Mutation p.Y1219C 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 11243994 11243994 G T TAS2R43 Missense_Mutation p.L279M 0.60 deleterious(0) probably_damaging(0.952) TCGA-AZ-4315-01 12 112694180 112694180 G A HECTD4 Missense_Mutation p.R945C 0.22 possibly_damaging(0.555) TCGA-AZ-4315-01 12 11286219 11286219 T C TAS2R30 Missense_Mutation p.M209V 0.34 deleterious(0.01) possibly_damaging(0.461) TCGA-AZ-4315-01 12 11286831 11286831 G T TAS2R30 Missense_Mutation p.L5M 0.24 deleterious(0.02) possibly_damaging(0.82) TCGA-AZ-4315-01 12 113379964 113379964 G A OAS3 Intron 0.33 TCGA-AZ-4315-01 12 113440876 113440876 G A OAS2 Missense_Mutation p.R383Q 0.23 tolerated(0.56) benign(0.037) TCGA-AZ-4315-01 12 113704042 113704042 G A TPCN1 Missense_Mutation p.A171T 0.43 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 113742182 113742182 C T SLC8B1 Missense_Mutation p.V501M 0.19 tolerated(0.06) probably_damaging(0.939) TCGA-AZ-4315-01 12 114364917 114364917 C A RBM19 Missense_Mutation p.G729V 0.24 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 12 114386716 114386716 C T RBM19 Missense_Mutation p.E400K 0.37 deleterious(0.01) possibly_damaging(0.626) TCGA-AZ-4315-01 12 114395841 114395841 C T RBM19 Missense_Mutation p.E196K 0.28 tolerated(0.28) benign(0.004) TCGA-AZ-4315-01 12 114793294 114793294 C T TBX5 3'UTR 0.25 TCGA-AZ-4315-01 12 114803922 114803922 G T TBX5 Intron 0.28 TCGA-AZ-4315-01 12 114832660 114832660 T C TBX5 Silent p.L183L 0.40 TCGA-AZ-4315-01 12 11506063 11506063 C T PRB1 Missense_Mutation p.R192K 0.25 tolerated_low_confidence(0.22) unknown(0) TCGA-AZ-4315-01 12 116586384 116586384 C A MED13L Intron 0.31 TCGA-AZ-4315-01 12 116972958 116972958 G T LINC00173 RNA 0.29 TCGA-AZ-4315-01 12 117160957 117160957 C T C12orf49 Silent p.V61V 0.15 TCGA-AZ-4315-01 12 117423201 117423201 G A FBXW8 Silent p.P342P 0.35 TCGA-AZ-4315-01 12 117962979 117962979 C T KSR2 Missense_Mutation p.E633K 0.34 deleterious(0.02) benign(0.103) TCGA-AZ-4315-01 12 117977585 117977585 C T KSR2 Silent p.P542P 0.50 TCGA-AZ-4315-01 12 118105422 118105422 C A KSR2 Missense_Mutation p.S343I 0.33 tolerated(0.11) benign(0.015) TCGA-AZ-4315-01 12 118509254 118509254 T C VSIG10 Missense_Mutation p.I414V 0.10 tolerated(0.5) benign(0.05) TCGA-AZ-4315-01 12 118511739 118511739 C T VSIG10 Silent p.T328T 0.33 TCGA-AZ-4315-01 12 118852318 118852318 A G SUDS3 3'UTR 0.23 TCGA-AZ-4315-01 12 119419786 119419786 C T SRRM4 Silent p.V33V 0.25 TCGA-AZ-4315-01 12 119559878 119559878 C A SRRM4 Silent p.S156S 0.41 TCGA-AZ-4315-01 12 119594461 119594461 G A SRRM4 Missense_Mutation p.R565H 0.32 deleterious_low_confidence(0) unknown(0) TCGA-AZ-4315-01 12 120135613 120135613 C T CIT Silent p.P1911P 0.47 TCGA-AZ-4315-01 12 120168386 120168386 C T CIT Missense_Mutation p.A1134T 0.26 tolerated(0.06) probably_damaging(0.917) TCGA-AZ-4315-01 12 120208662 120208662 C T CIT Missense_Mutation p.R712H 0.33 deleterious(0.04) possibly_damaging(0.904) TCGA-AZ-4315-01 12 120213605 120213605 T G CIT Missense_Mutation p.Q642H 0.43 deleterious(0) probably_damaging(0.921) TCGA-AZ-4315-01 12 120220336 120220336 C A CIT Nonsense_Mutation p.E551* 0.31 TCGA-AZ-4315-01 12 120220366 120220366 C A CIT Missense_Mutation p.D541Y 0.31 deleterious(0) possibly_damaging(0.707) TCGA-AZ-4315-01 12 120260717 120260717 T G CIT Missense_Mutation p.S340R 0.31 tolerated(0.65) benign(0.008) TCGA-AZ-4315-01 12 120589092 120589092 T C GCN1L1 Missense_Mutation p.D1389G 0.30 benign(0.256) TCGA-AZ-4315-01 12 120794796 120794796 C A MSI1 Missense_Mutation p.K187N 0.31 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 12 120984382 120984382 T C RNF10 Missense_Mutation p.F111S 0.47 tolerated(0.52) benign(0) TCGA-AZ-4315-01 12 121003293 121003293 C T RNF10 Missense_Mutation p.R616C 0.32 deleterious(0) benign(0.14) TCGA-AZ-4315-01 12 121693602 121693602 C T CAMKK2 Missense_Mutation p.E268K 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 121766168 121766168 C T ANAPC5 Missense_Mutation p.D419N 0.33 tolerated(0.36) possibly_damaging(0.71) TCGA-AZ-4315-01 12 122265949 122265949 C T SETD1B Silent p.F1857F 0.37 TCGA-AZ-4315-01 12 122284777 122284777 G T HPD Silent p.I274I 0.30 TCGA-AZ-4315-01 12 122398596 122398596 C T WDR66 Missense_Mutation p.L747F 0.35 deleterious(0) probably_damaging(0.918) TCGA-AZ-4315-01 12 12252029 12252029 G T BCL2L14 3'UTR 0.36 TCGA-AZ-4315-01 12 122617971 122617971 C T MLXIP Missense_Mutation p.S390F 0.31 deleterious(0.04) possibly_damaging(0.498) TCGA-AZ-4315-01 12 122669075 122669075 C T LRRC43 Missense_Mutation p.R54C 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 122757541 122757541 A G CLIP1 Missense_Mutation p.S1400P 0.26 tolerated(1) benign(0.216) TCGA-AZ-4315-01 12 122825318 122825318 C A CLIP1 Missense_Mutation p.K811N 0.32 tolerated(0.14) possibly_damaging(0.663) TCGA-AZ-4315-01 12 122825728 122825728 C A CLIP1 Nonsense_Mutation p.E675* 0.30 TCGA-AZ-4315-01 12 122967933 122967933 A C ZCCHC8 Intron 0.29 TCGA-AZ-4315-01 12 123001775 123001775 G A RSRC2 Nonsense_Mutation p.R201* 0.35 TCGA-AZ-4315-01 12 123089428 123089428 A G KNTC1 Missense_Mutation p.E1727G 0.30 tolerated(0.07) possibly_damaging(0.478) TCGA-AZ-4315-01 12 123089882 123089882 G A KNTC1 Missense_Mutation p.E1806K 0.38 tolerated(0.08) probably_damaging(0.952) TCGA-AZ-4315-01 12 123105061 123105061 T C KNTC1 Missense_Mutation p.V2062A 0.31 deleterious(0) benign(0.135) TCGA-AZ-4315-01 12 12315228 12315228 C T LRP6 Silent p.T726T 0.30 TCGA-AZ-4315-01 12 123200074 123200074 C A HCAR3 3'UTR 0.17 TCGA-AZ-4315-01 12 123214996 123214996 C A HCAR1 5'UTR 0.34 TCGA-AZ-4315-01 12 12334106 12334106 C T LRP6 Missense_Mutation p.R415Q 0.33 deleterious(0.02) possibly_damaging(0.73) TCGA-AZ-4315-01 12 123351894 123351894 G T VPS37B Silent p.P209P 0.48 TCGA-AZ-4315-01 12 123444423 123444423 G A ABCB9 Silent p.F120F 0.42 TCGA-AZ-4315-01 12 123472845 123472845 G A PITPNM2 Missense_Mutation p.S978L 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-AZ-4315-01 12 123694648 123694648 C A MPHOSPH9 Missense_Mutation p.E231D 0.32 tolerated(0.63) benign(0.195) TCGA-AZ-4315-01 12 123815833 123815833 T G SBNO1 Silent p.G333G 0.35 TCGA-AZ-4315-01 12 124103211 124103211 T C DDX55 Intron 0.40 TCGA-AZ-4315-01 12 124123821 124123821 G T GTF2H3 Missense_Mutation p.L8F 0.31 tolerated(0.48) benign(0.436) TCGA-AZ-4315-01 12 124270427 124270427 C T DNAH10 Silent p.I394I 0.22 TCGA-AZ-4315-01 12 124283805 124283805 T C DNAH10 Missense_Mutation p.Y608H 0.33 probably_damaging(0.996) TCGA-AZ-4315-01 12 124284789 124284789 G A DNAH10 Silent p.S654S 0.35 TCGA-AZ-4315-01 12 124317775 124317775 T C DNAH10 Missense_Mutation p.S1436P 0.37 benign(0.233) TCGA-AZ-4315-01 12 124323145 124323145 C T DNAH10 Missense_Mutation p.A1564V 0.24 benign(0.34) TCGA-AZ-4315-01 12 124333344 124333344 G A DNAH10 Missense_Mutation p.R1888Q 0.28 probably_damaging(1) TCGA-AZ-4315-01 12 124383342 124383342 C T DNAH10 Silent p.I3089I 0.33 TCGA-AZ-4315-01 12 124401141 124401141 C A DNAH10 Silent p.V3502V 0.37 TCGA-AZ-4315-01 12 124498304 124498304 T G ZNF664 3'UTR 0.36 TCGA-AZ-4315-01 12 124499321 124499321 C T ZNF664 3'UTR 0.35 TCGA-AZ-4315-01 12 124968263 124968263 T G NCOR2 Missense_Mutation p.K97T 0.27 unknown(0) TCGA-AZ-4315-01 12 125432569 125432569 A C DHX37 Intron 0.30 TCGA-AZ-4315-01 12 129100738 129100738 A G TMEM132C Missense_Mutation p.E388G 0.37 tolerated(0.15) benign(0.317) TCGA-AZ-4315-01 12 129558869 129558869 G T TMEM132D Missense_Mutation p.P951T 0.33 deleterious(0) probably_damaging(0.935) TCGA-AZ-4315-01 12 129559186 129559186 G T TMEM132D Missense_Mutation p.S845Y 0.32 deleterious(0) possibly_damaging(0.583) TCGA-AZ-4315-01 12 129559434 129559434 T C TMEM132D Silent p.G762G 0.29 TCGA-AZ-4315-01 12 129694087 129694087 G A TMEM132D Missense_Mutation p.S474L 0.40 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 12 12977481 12977481 G A DDX47 Missense_Mutation p.R302H 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 129822306 129822306 C G TMEM132D Missense_Mutation p.G391A 0.31 tolerated(0.08) benign(0.001) TCGA-AZ-4315-01 12 13068646 13068646 G A GPRC5A 3'UTR 0.60 TCGA-AZ-4315-01 12 131456058 131456058 C A GPR133 Silent p.V81V 0.28 TCGA-AZ-4315-01 12 131602934 131602934 T C GPR133 Silent p.F682F 0.33 TCGA-AZ-4315-01 12 132394476 132394476 G T ULK1 Missense_Mutation p.E246D 0.19 deleterious(0) probably_damaging(0.937) TCGA-AZ-4315-01 12 132405764 132405764 C T ULK1 Silent p.I1027I 0.24 TCGA-AZ-4315-01 12 13241763 13241763 G A GSG1 Intron 0.47 TCGA-AZ-4315-01 12 132630170 132630170 G A NOC4L Missense_Mutation p.R102H 0.50 tolerated(0.57) benign(0.009) TCGA-AZ-4315-01 12 133215787 133215787 G A POLE Missense_Mutation p.R1826W 0.32 deleterious(0) probably_damaging(0.951) TCGA-AZ-4315-01 12 133218935 133218935 G A POLE Silent p.F1667F 0.22 TCGA-AZ-4315-01 12 133219468 133219468 G A POLE Missense_Mutation p.R1556W 0.38 deleterious(0.02) possibly_damaging(0.901) TCGA-AZ-4315-01 12 133250289 133250289 C A POLE Missense_Mutation p.V411L 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 133501868 133501868 A G ZNF605 3'UTR 0.30 TCGA-AZ-4315-01 12 133732854 133732854 G T ZNF10 Missense_Mutation p.R341I 0.39 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 12 133779319 133779319 A G ZNF268 Missense_Mutation p.I349M 0.19 tolerated(0.19) benign(0.254) TCGA-AZ-4315-01 12 1346024 1346024 C T ERC1 Missense_Mutation p.A814V 0.24 tolerated(0.2) probably_damaging(0.987) TCGA-AZ-4315-01 12 14769616 14769616 C A GUCY2C Missense_Mutation p.R974I 0.30 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 12 14928851 14928851 G A H2AFJ 3'UTR 0.07 TCGA-AZ-4315-01 12 14976683 14976683 C A C12orf60 3'UTR 0.30 TCGA-AZ-4315-01 12 15035186 15035186 C T MGP Missense_Mutation p.E92K 0.29 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 12 15095481 15095481 G A ARHGDIB Missense_Mutation p.S194L 0.29 tolerated(0.19) benign(0.158) TCGA-AZ-4315-01 12 15262108 15262108 C T RERG Missense_Mutation p.R179Q 0.40 deleterious(0.01) possibly_damaging(0.784) TCGA-AZ-4315-01 12 15262222 15262222 G A RERG Missense_Mutation p.A141V 0.39 deleterious(0.03) benign(0.216) TCGA-AZ-4315-01 12 16036524 16036524 A C STRAP Silent p.T54T 0.35 TCGA-AZ-4315-01 12 16135309 16135309 G A DERA Silent p.A192A 0.37 TCGA-AZ-4315-01 12 18234319 18234319 C T RERGL Missense_Mutation p.A142T 0.31 deleterious(0) possibly_damaging(0.633) TCGA-AZ-4315-01 12 18837103 18837103 G T PLCZ1 Missense_Mutation p.L568I 0.35 tolerated(0.88) benign(0.246) TCGA-AZ-4315-01 12 1887174 1887174 T C ADIPOR2 Missense_Mutation p.I149T 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 18872490 18872491 - T PLCZ1 Frame_Shift_Ins p.N148Kfs*2 0.21 TCGA-AZ-4315-01 12 18891398 18891398 G A CAPZA3 Missense_Mutation p.D66N 0.29 tolerated(1) benign(0.01) TCGA-AZ-4315-01 12 1895366 1895366 G A ADIPOR2 3'UTR 0.19 TCGA-AZ-4315-01 12 19410404 19410404 A C PLEKHA5 Missense_Mutation p.K157T 0.42 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 12 19436563 19436563 T C PLEKHA5 Missense_Mutation p.S555P 0.26 tolerated(0.06) benign(0.012) TCGA-AZ-4315-01 12 19472963 19472963 A G PLEKHA5 Silent p.R709R 0.32 TCGA-AZ-4315-01 12 19646854 19646854 G A AEBP2 Missense_Mutation p.E370K 0.25 tolerated_low_confidence(0.09) benign(0.122) TCGA-AZ-4315-01 12 2022201 2022201 G A CACNA2D4 Silent p.V138V 0.31 TCGA-AZ-4315-01 12 21445208 21445208 G A SLCO1A2 Silent p.C500C 0.25 TCGA-AZ-4315-01 12 21623092 21623092 A C PYROXD1 3'UTR 0.36 TCGA-AZ-4315-01 12 21684165 21684165 C T C12orf39 3'UTR 0.26 TCGA-AZ-4315-01 12 21728835 21728835 T G GYS2 Missense_Mutation p.I154L 0.41 tolerated(0.9) probably_damaging(0.994) TCGA-AZ-4315-01 12 22012526 22012526 G T ABCC9 Silent p.V833V 0.27 TCGA-AZ-4315-01 12 22401947 22401947 G A ST8SIA1 Missense_Mutation p.R193W 0.25 deleterious(0.02) possibly_damaging(0.809) TCGA-AZ-4315-01 12 22677460 22677460 G A C2CD5 Missense_Mutation p.R183C 0.27 deleterious(0) probably_damaging(0.957) TCGA-AZ-4315-01 12 23699304 23699304 C T SOX5 Missense_Mutation p.E515K 0.33 tolerated(0.09) benign(0.092) TCGA-AZ-4315-01 12 24102634 24102634 T C SOX5 5'UTR 0.32 TCGA-AZ-4315-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.27 deleterious(0.03) possibly_damaging(0.876) TCGA-AZ-4315-01 12 26232152 26232152 C A RASSF8 3'UTR 0.25 TCGA-AZ-4315-01 12 26834898 26834898 G A ITPR2 Nonsense_Mutation p.R440* 0.31 TCGA-AZ-4315-01 12 26868698 26868698 T C ITPR2 Missense_Mutation p.D232G 0.24 tolerated(0.11) benign(0.009) TCGA-AZ-4315-01 12 2763027 2763027 C T CACNA1C Silent p.I1415I 0.24 TCGA-AZ-4315-01 12 27850006 27850006 A C REP15 Missense_Mutation p.K171Q 0.33 deleterious(0.01) possibly_damaging(0.463) TCGA-AZ-4315-01 12 2786065 2786065 C T CACNA1C Intron 0.27 TCGA-AZ-4315-01 12 280494 280494 T G IQSEC3 Intron 0.39 TCGA-AZ-4315-01 12 28702196 28702196 C A CCDC91 3'UTR 0.26 TCGA-AZ-4315-01 12 2908368 2908368 G A FKBP4 Missense_Mutation p.R210H 0.62 tolerated(0.06) benign(0.026) TCGA-AZ-4315-01 12 29624890 29624890 A G OVCH1 Silent p.S567S 0.24 TCGA-AZ-4315-01 12 29630140 29630140 T G OVCH1 Silent p.I424I 0.17 TCGA-AZ-4315-01 12 2983165 2983165 G A FOXM1 Silent p.C160C 0.34 TCGA-AZ-4315-01 12 300288 300288 C T SLC6A12 Silent p.G597G 0.50 TCGA-AZ-4315-01 12 30864505 30864505 G A CAPRIN2 Missense_Mutation p.S887L 0.32 deleterious(0) possibly_damaging(0.712) TCGA-AZ-4315-01 12 30872150 30872150 G A CAPRIN2 Intron 0.26 TCGA-AZ-4315-01 12 31595859 31595859 G A DENND5B Missense_Mutation p.A621V 0.44 tolerated(0.16) benign(0.022) TCGA-AZ-4315-01 12 31814955 31814955 G T METTL20 Missense_Mutation p.S23I 0.36 deleterious_low_confidence(0.01) benign(0.188) TCGA-AZ-4315-01 12 31850809 31850809 G T AMN1 Silent p.V133V 0.25 TCGA-AZ-4315-01 12 32136279 32136279 T G KIAA1551 Missense_Mutation p.V797G 0.28 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 12 32900293 32900293 G A YARS2 Nonsense_Mutation p.R427* 0.32 TCGA-AZ-4315-01 12 32945193 32945193 A G PKP2 3'UTR 0.43 TCGA-AZ-4315-01 12 331772 331772 C T SLC6A13 Missense_Mutation p.E481K 0.66 tolerated(0.23) possibly_damaging(0.904) TCGA-AZ-4315-01 12 33538139 33538139 T G SYT10 Missense_Mutation p.N389H 0.22 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 12 33559975 33559975 G T SYT10 Missense_Mutation p.L276I 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 34179592 34179592 G T ALG10 Missense_Mutation p.L388F 0.33 tolerated(0.08) benign(0.443) TCGA-AZ-4315-01 12 3692293 3692293 C T PRMT8 Missense_Mutation p.R300C 0.40 deleterious(0.01) probably_damaging(0.961) TCGA-AZ-4315-01 12 3701476 3701476 A C PRMT8 Missense_Mutation p.E353D 0.37 tolerated(0.12) benign(0.007) TCGA-AZ-4315-01 12 39731002 39731002 G A KIF21A Missense_Mutation p.R772C 0.23 deleterious(0.03) benign(0.359) TCGA-AZ-4315-01 12 39980086 39980086 G T ABCD2 Missense_Mutation p.L554I 0.31 tolerated(0.67) benign(0.004) TCGA-AZ-4315-01 12 39998658 39998658 A C ABCD2 Missense_Mutation p.I437M 0.35 tolerated(0.12) benign(0.01) TCGA-AZ-4315-01 12 39998673 39998673 T G ABCD2 Missense_Mutation p.E432D 0.32 tolerated(1) benign(0.002) TCGA-AZ-4315-01 12 40114724 40114724 G A C12orf40 Missense_Mutation p.D544N 0.27 tolerated(1) benign(0) TCGA-AZ-4315-01 12 40671950 40671950 A T LRRK2 Missense_Mutation p.N710Y 0.30 tolerated(0.33) benign(0.238) TCGA-AZ-4315-01 12 40916609 40916609 G T MUC19 Intron 0.43 TCGA-AZ-4315-01 12 40917181 40917181 C A MUC19 Intron 0.44 TCGA-AZ-4315-01 12 40920909 40920909 G T MUC19 Intron 0.50 TCGA-AZ-4315-01 12 40926833 40926833 C T MUC19 Intron 0.37 TCGA-AZ-4315-01 12 40954352 40954352 G T MUC19 3'UTR 0.38 TCGA-AZ-4315-01 12 41302254 41302254 T C CNTN1 Missense_Mutation p.V7A 0.10 tolerated(0.51) benign(0.012) TCGA-AZ-4315-01 12 41337806 41337806 G A CNTN1 Missense_Mutation p.R506Q 0.31 deleterious(0.01) benign(0.42) TCGA-AZ-4315-01 12 41352958 41352958 A - CNTN1 Frame_Shift_Del p.K576Nfs*24 0.12 TCGA-AZ-4315-01 12 41831731 41831731 C T PDZRN4 Intron 0.28 TCGA-AZ-4315-01 12 41967139 41967139 A C PDZRN4 Missense_Mutation p.Y853S 0.33 tolerated(0.07) probably_damaging(0.998) TCGA-AZ-4315-01 12 42499780 42499780 T G GXYLT1 Missense_Mutation p.K235T 0.33 tolerated(0.14) benign(0.07) TCGA-AZ-4315-01 12 42499859 42499859 C A GXYLT1 Nonsense_Mutation p.E209* 0.29 TCGA-AZ-4315-01 12 42853611 42853611 T C PRICKLE1 Silent p.%3D 0.33 TCGA-AZ-4315-01 12 42854422 42854422 G T PRICKLE1 Missense_Mutation p.S562Y 0.31 deleterious(0) possibly_damaging(0.58) TCGA-AZ-4315-01 12 42858194 42858194 T C PRICKLE1 Intron 0.34 TCGA-AZ-4315-01 12 43792906 43792906 A G ADAMTS20 Missense_Mutation p.V1472A 0.36 tolerated(0.48) benign(0.001) TCGA-AZ-4315-01 12 438161 438161 C T KDM5A Missense_Mutation p.R603Q 0.49 deleterious(0) possibly_damaging(0.591) TCGA-AZ-4315-01 12 43825179 43825179 C A ADAMTS20 Nonsense_Mutation p.E1073* 0.36 TCGA-AZ-4315-01 12 43887036 43887036 A G ADAMTS20 Silent p.D296D 0.35 TCGA-AZ-4315-01 12 4479941 4479941 G A FGF23 Silent p.F108F 0.30 TCGA-AZ-4315-01 12 45444408 45444408 C T DBX2 Silent p.T101T 0.26 TCGA-AZ-4315-01 12 45567858 45567858 C T PLEKHA8P1 RNA 0.32 TCGA-AZ-4315-01 12 45741979 45741979 G A ANO6 Missense_Mutation p.E193K 0.35 tolerated(0.55) benign(0.116) TCGA-AZ-4315-01 12 45771839 45771839 T G ANO6 Missense_Mutation p.L391V 0.29 tolerated(0.22) probably_damaging(0.999) TCGA-AZ-4315-01 12 46230632 46230632 G T ARID2 Missense_Mutation p.R294I 0.26 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 12 46242654 46242654 C A ARID2 Missense_Mutation p.S539Y 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-4315-01 12 46245225 46245225 G A ARID2 Missense_Mutation p.A1107T 0.30 tolerated_low_confidence(0.56) benign(0.001) TCGA-AZ-4315-01 12 46316772 46316772 T G SCAF11 Missense_Mutation p.S1358R 0.31 tolerated(0.14) benign(0.216) TCGA-AZ-4315-01 12 463325 463325 C A KDM5A Missense_Mutation p.D316Y 0.25 deleterious(0) possibly_damaging(0.847) TCGA-AZ-4315-01 12 4665692 4665692 A G RAD51AP1 Intron 0.27 TCGA-AZ-4315-01 12 4735996 4735996 G A AKAP3 Missense_Mutation p.S691L 0.27 deleterious(0.03) possibly_damaging(0.521) TCGA-AZ-4315-01 12 48104483 48104483 T G ENDOU 3'UTR 0.42 TCGA-AZ-4315-01 12 48107168 48107168 C T ENDOU Missense_Mutation p.R252H 0.34 tolerated(0.46) probably_damaging(0.917) TCGA-AZ-4315-01 12 48144197 48144197 C T RAPGEF3 Missense_Mutation p.R228H 0.30 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 12 48391444 48391444 C A COL2A1 Missense_Mutation p.G159V 0.21 unknown(0) TCGA-AZ-4315-01 12 48438921 48438921 A C SENP1 3'UTR 0.47 TCGA-AZ-4315-01 12 48962960 48962960 C T LALBA Missense_Mutation p.S66N 0.24 tolerated(0.12) benign(0.007) TCGA-AZ-4315-01 12 49164718 49164718 C A ADCY6 Missense_Mutation p.K1029N 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 49217505 49217505 C T CACNB3 Silent p.Y70Y 0.32 TCGA-AZ-4315-01 12 49237729 49237729 C T DDX23 Missense_Mutation p.R105Q 0.35 tolerated_low_confidence(0.06) unknown(0) TCGA-AZ-4315-01 12 49431910 49431910 T C KMT2D Missense_Mutation p.N3077D 0.29 probably_damaging(0.98) TCGA-AZ-4315-01 12 49485014 49485014 G A DHH Silent p.R154R 0.36 TCGA-AZ-4315-01 12 49580179 49580179 C A TUBA1A Nonsense_Mutation p.E97* 0.31 TCGA-AZ-4315-01 12 49724070 49724070 C T TROAP Missense_Mutation p.A481V 0.35 tolerated(0.16) benign(0.098) TCGA-AZ-4315-01 12 49912874 49912874 G A SPATS2 Missense_Mutation p.R306Q 0.28 deleterious(0) benign(0.088) TCGA-AZ-4315-01 12 49912932 49912932 G A SPATS2 Silent p.E325E 0.26 TCGA-AZ-4315-01 12 49958316 49958316 G A MCRS1 Missense_Mutation p.R182W 0.18 deleterious(0) possibly_damaging(0.764) TCGA-AZ-4315-01 12 49994797 49994797 G A FAM186B Missense_Mutation p.A209V 0.37 tolerated(1) benign(0.002) TCGA-AZ-4315-01 12 50040729 50040729 C T FMNL3 Missense_Mutation p.A979T 0.38 tolerated(0.5) probably_damaging(0.991) TCGA-AZ-4315-01 12 50188908 50188908 C T NCKAP5L Missense_Mutation p.R912H 0.28 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 12 5021622 5021622 C T KCNA1 Missense_Mutation p.P360S 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 5022560 5022560 C T KCNA1 3'UTR 0.36 TCGA-AZ-4315-01 12 5024115 5024115 A G KCNA1 3'UTR 0.33 TCGA-AZ-4315-01 12 5024620 5024620 G T KCNA1 3'UTR 0.26 TCGA-AZ-4315-01 12 5024812 5024812 A G KCNA1 3'UTR 0.35 TCGA-AZ-4315-01 12 5026279 5026279 A C KCNA1 3'UTR 0.31 TCGA-AZ-4315-01 12 5026728 5026728 G T KCNA1 3'UTR 0.44 TCGA-AZ-4315-01 12 50291787 50291787 G A FAIM2 Nonsense_Mutation p.R100* 0.34 TCGA-AZ-4315-01 12 50475045 50475045 C A ASIC1 Silent p.V506V 0.42 TCGA-AZ-4315-01 12 50571823 50571823 C A LIMA1 Missense_Mutation p.R436I 0.34 deleterious(0.04) benign(0.128) TCGA-AZ-4315-01 12 50745132 50745132 G T FAM186A Missense_Mutation p.S1828Y 0.30 tolerated(0.27) benign(0.246) TCGA-AZ-4315-01 12 51069196 51069196 A C DIP2B Missense_Mutation p.E294A 0.30 deleterious(0) probably_damaging(0.95) TCGA-AZ-4315-01 12 51281302 51281302 T G TMPRSS12 3'UTR 0.34 TCGA-AZ-4315-01 12 51663150 51663150 C T SMAGP Intron 0.29 TCGA-AZ-4315-01 12 51686080 51686080 T A BIN2 Silent p.T270T 0.42 TCGA-AZ-4315-01 12 51758030 51758030 G A GALNT6 Silent p.F308F 0.30 TCGA-AZ-4315-01 12 51863398 51863398 G A SLC4A8 Silent p.R450R 0.35 TCGA-AZ-4315-01 12 51864289 51864289 G T SLC4A8 Missense_Mutation p.K546N 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 12 51865123 51865123 G A SLC4A8 Missense_Mutation p.A571T 0.37 tolerated(0.08) probably_damaging(0.999) TCGA-AZ-4315-01 12 52080896 52080896 T C SCN8A Silent p.Y169Y 0.29 TCGA-AZ-4315-01 12 52164324 52164324 C T SCN8A Missense_Mutation p.R1168W 0.34 deleterious(0) probably_damaging(0.916) TCGA-AZ-4315-01 12 52285230 52285230 C A ANKRD33 3'UTR 0.30 TCGA-AZ-4315-01 12 52756045 52756045 C T KRT85 Missense_Mutation p.E430K 0.51 deleterious(0.01) benign(0.411) TCGA-AZ-4315-01 12 52827609 52827609 G A KRT75 Silent p.F160F 0.32 TCGA-AZ-4315-01 12 52910512 52910512 G A KRT5 Silent p.L450L 0.28 TCGA-AZ-4315-01 12 52941701 52941701 G T KRT71 Silent p.I348I 0.42 TCGA-AZ-4315-01 12 52966395 52966395 C T KRT74 Silent p.Q176Q 0.30 TCGA-AZ-4315-01 12 52967109 52967109 G A KRT74 Silent p.F151F 0.31 TCGA-AZ-4315-01 12 52967503 52967503 G A KRT74 Missense_Mutation p.S20L 0.29 deleterious(0) benign(0.176) TCGA-AZ-4315-01 12 52994829 52994829 G A KRT72 Silent p.F136F 0.19 TCGA-AZ-4315-01 12 53012148 53012148 G A KRT73 Missense_Mutation p.A54V 0.33 tolerated(0.06) benign(0.001) TCGA-AZ-4315-01 12 53038702 53038702 A C KRT2 3'UTR 0.36 TCGA-AZ-4315-01 12 53070234 53070234 C T KRT1 Missense_Mutation p.E434K 0.28 deleterious(0) probably_damaging(0.97) TCGA-AZ-4315-01 12 53074125 53074125 C T KRT1 Missense_Mutation p.R3Q 0.27 deleterious(0) unknown(0) TCGA-AZ-4315-01 12 53189440 53189440 A G KRT3 Silent p.G129G 0.26 TCGA-AZ-4315-01 12 53215852 53215852 C T KRT79 Missense_Mutation p.G471D 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 12 53715400 53715400 A C AAAS 5'UTR 0.55 TCGA-AZ-4315-01 12 53776740 53776740 G A SP1 Missense_Mutation p.G337R 0.32 deleterious(0.02) probably_damaging(0.979) TCGA-AZ-4315-01 12 54333206 54333206 C T HOXC13 Silent p.F172F 0.25 TCGA-AZ-4315-01 12 54367281 54367281 C T HOXC11 Missense_Mutation p.R86W 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 54422273 54422273 G T HOXC6 5'UTR 0.32 TCGA-AZ-4315-01 12 54423544 54423544 G A HOXC6 Missense_Mutation p.R169H 0.33 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 12 54757284 54757284 G A GPR84 Missense_Mutation p.R118C 0.21 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 54794679 54794679 G A ITGA5 Missense_Mutation p.T865M 0.36 tolerated(0.1) benign(0.031) TCGA-AZ-4315-01 12 54797444 54797444 G A ITGA5 Nonsense_Mutation p.R581* 0.33 TCGA-AZ-4315-01 12 54920455 54920455 G A NCKAP1L Missense_Mutation p.R767H 0.37 deleterious(0.04) possibly_damaging(0.806) TCGA-AZ-4315-01 12 550121 550121 C T CCDC77 Missense_Mutation p.L427F 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 12 55356792 55356792 C T TESPA1 Missense_Mutation p.R297Q 0.28 deleterious(0.02) benign(0.433) TCGA-AZ-4315-01 12 55420216 55420216 G A NEUROD4 Intron 0.39 TCGA-AZ-4315-01 12 55714458 55714458 C A OR6C1 Silent p.I25I 0.37 TCGA-AZ-4315-01 12 55714978 55714979 - C OR6C1 Frame_Shift_Ins p.C200Lfs*31 0.24 TCGA-AZ-4315-01 12 55759147 55759147 A C OR6C75 Missense_Mutation p.T85P 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AZ-4315-01 12 55759820 55759820 C T OR6C75 Missense_Mutation p.S309F 0.32 tolerated_low_confidence(0.78) benign(0.049) TCGA-AZ-4315-01 12 55794637 55794637 G T OR6C65 Nonsense_Mutation p.E109* 0.32 TCGA-AZ-4315-01 12 55820128 55820128 C A OR6C76 Missense_Mutation p.L31I 0.08 tolerated_low_confidence(0.45) benign(0.003) TCGA-AZ-4315-01 12 5603879 5603879 G A NTF3 Missense_Mutation p.D180N 0.35 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 12 56143417 56143417 C T GDF11 Silent p.F325F 0.42 TCGA-AZ-4315-01 12 56215652 56215652 G T DNAJC14 3'UTR 0.25 TCGA-AZ-4315-01 12 56230875 56230875 G A MMP19 Missense_Mutation p.T491M 0.35 tolerated_low_confidence(0.23) unknown(0) TCGA-AZ-4315-01 12 56230973 56230973 C A MMP19 Missense_Mutation p.E458D 0.32 tolerated(0.27) probably_damaging(0.926) TCGA-AZ-4315-01 12 56600228 56600228 C A RNF41 3'UTR 0.32 TCGA-AZ-4315-01 12 56630789 56630789 G A SLC39A5 Missense_Mutation p.E428K 0.33 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 12 5672402 5672402 A G ANO2 3'UTR 0.27 TCGA-AZ-4315-01 12 56732824 56732824 A G IL23A 5'UTR 0.15 TCGA-AZ-4315-01 12 56754854 56754854 C T APOF 3'UTR 0.33 TCGA-AZ-4315-01 12 56815708 56815708 C T TIMELESS Missense_Mutation p.A873T 0.30 deleterious(0.04) possibly_damaging(0.881) TCGA-AZ-4315-01 12 56956345 56956345 G T RBMS2 Missense_Mutation p.D71Y 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 56982142 56982142 C T RBMS2 Missense_Mutation p.S376F 0.33 deleterious(0) benign(0.379) TCGA-AZ-4315-01 12 57110722 57110722 G A NACA Intron 0.30 TCGA-AZ-4315-01 12 57167928 57167928 A G HSD17B6 Missense_Mutation p.K98E 0.28 tolerated(0.06) benign(0.12) TCGA-AZ-4315-01 12 57324155 57324155 C T SDR9C7 Missense_Mutation p.E139K 0.31 deleterious(0.04) possibly_damaging(0.574) TCGA-AZ-4315-01 12 57346661 57346661 C T RDH16 Missense_Mutation p.R229Q 0.36 tolerated(0.53) benign(0.002) TCGA-AZ-4315-01 12 57430619 57430619 C A MYO1A Missense_Mutation p.K737N 0.32 deleterious(0.01) benign(0.273) TCGA-AZ-4315-01 12 57453536 57453536 A G TMEM194A 3'UTR 0.33 TCGA-AZ-4315-01 12 57590782 57590782 C T LRP1 Silent p.G2970G 0.19 TCGA-AZ-4315-01 12 57610807 57610807 A G NXPH4 Missense_Mutation p.K19E 0.27 tolerated_low_confidence(0.28) benign(0.004) TCGA-AZ-4315-01 12 57648612 57648612 G A R3HDM2 Nonsense_Mutation p.R959* 0.33 TCGA-AZ-4315-01 12 57861838 57861838 G A GLI1 Missense_Mutation p.R380Q 0.27 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 12 57865439 57865439 A C GLI1 Missense_Mutation p.E972D 0.27 tolerated_low_confidence(0.23) benign(0.007) TCGA-AZ-4315-01 12 58007189 58007189 C T ARHGEF25 Intron 0.34 TCGA-AZ-4315-01 12 58007845 58007845 G A ARHGEF25 Missense_Mutation p.R239Q 0.41 deleterious(0.03) possibly_damaging(0.625) TCGA-AZ-4315-01 12 58009395 58009395 G A ARHGEF25 Missense_Mutation p.R419H 0.28 deleterious(0.04) probably_damaging(1) TCGA-AZ-4315-01 12 58124664 58124664 G A AGAP2 Missense_Mutation p.P740S 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 12 58140483 58140483 G T TSPAN31 Missense_Mutation p.D142Y 0.37 deleterious(0.01) probably_damaging(0.941) TCGA-AZ-4315-01 12 58152550 58152550 G A MARCH9 Missense_Mutation p.R304H 0.31 tolerated(0.35) benign(0.003) TCGA-AZ-4315-01 12 58158677 58158677 C T CYP27B1 Missense_Mutation p.A275T 0.29 tolerated(0.5) benign(0.006) TCGA-AZ-4315-01 12 58163570 58163570 G T METTL1 Missense_Mutation p.F148L 0.33 deleterious(0.02) benign(0.329) TCGA-AZ-4315-01 12 59268033 59268033 A G LRIG3 Silent p.C973C 0.36 TCGA-AZ-4315-01 12 59268054 59268054 C T LRIG3 Silent p.K966K 0.29 TCGA-AZ-4315-01 12 59274530 59274530 T C LRIG3 Missense_Mutation p.E545G 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-AZ-4315-01 12 6122709 6122709 C T VWF Missense_Mutation p.R1853Q 0.34 tolerated(0.25) benign(0.001) TCGA-AZ-4315-01 12 6128230 6128230 C T VWF Missense_Mutation p.E1452K 0.26 tolerated(0.23) possibly_damaging(0.745) TCGA-AZ-4315-01 12 62918354 62918354 A G MON2 Silent p.P348P 0.32 TCGA-AZ-4315-01 12 62931429 62931429 G A MON2 Silent p.A687A 0.19 TCGA-AZ-4315-01 12 62932199 62932199 C A MON2 Missense_Mutation p.L760I 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 62940699 62940699 A G MON2 Missense_Mutation p.N867S 0.28 tolerated(1) benign(0.013) TCGA-AZ-4315-01 12 62986545 62986545 T G MON2 3'UTR 0.34 TCGA-AZ-4315-01 12 63954157 63954157 A C DPY19L2 3'UTR 0.31 TCGA-AZ-4315-01 12 63977655 63977655 C A DPY19L2 Intron 0.30 TCGA-AZ-4315-01 12 63977706 63977706 T G DPY19L2 Intron 0.32 TCGA-AZ-4315-01 12 63977749 63977749 A C DPY19L2 Intron 0.30 TCGA-AZ-4315-01 12 63994162 63994162 A G DPY19L2 Missense_Mutation p.I428T 0.29 tolerated(0.08) benign(0.142) TCGA-AZ-4315-01 12 64041099 64041099 A G DPY19L2 Missense_Mutation p.L212S 0.27 tolerated(0.12) benign(0.056) TCGA-AZ-4315-01 12 64202558 64202558 C T TMEM5 Nonsense_Mutation p.R340* 0.36 TCGA-AZ-4315-01 12 6443283 6443283 G A TNFRSF1A Missense_Mutation p.S56L 0.31 deleterious(0) possibly_damaging(0.814) TCGA-AZ-4315-01 12 64609470 64609470 T G C12orf66 Missense_Mutation p.K170T 0.20 tolerated(0.67) benign(0.11) TCGA-AZ-4315-01 12 6486515 6486515 T G SCNN1A 5'Flank 0.38 TCGA-AZ-4315-01 12 65113866 65113866 G A GNS Missense_Mutation p.R506W 0.34 deleterious(0.03) probably_damaging(0.962) TCGA-AZ-4315-01 12 65134422 65134422 G T GNS Missense_Mutation p.S280Y 0.27 deleterious(0.01) benign(0.209) TCGA-AZ-4315-01 12 65445245 65445245 C T WIF1 Missense_Mutation p.E342K 0.35 tolerated(1) benign(0) TCGA-AZ-4315-01 12 65637227 65637227 C T LEMD3 Missense_Mutation p.R789W 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 65639969 65639969 G A LEMD3 Missense_Mutation p.R867Q 0.29 deleterious(0) probably_damaging(0.949) TCGA-AZ-4315-01 12 65639990 65639990 G A LEMD3 Missense_Mutation p.R874H 0.32 deleterious(0) possibly_damaging(0.908) TCGA-AZ-4315-01 12 663049 663049 G A B4GALNT3 Missense_Mutation p.D654N 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 6637449 6637449 G A NCAPD2 Missense_Mutation p.R1085H 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4315-01 12 6639887 6639887 C T NCAPD2 Missense_Mutation p.R1290W 0.26 deleterious(0.01) possibly_damaging(0.462) TCGA-AZ-4315-01 12 6645733 6645733 G T GAPDH Missense_Mutation p.D35Y 0.12 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-AZ-4315-01 12 6645749 6645749 T G GAPDH Missense_Mutation p.L40R 0.43 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-AZ-4315-01 12 66610953 66610953 G A IRAK3 Silent p.E197E 0.25 TCGA-AZ-4315-01 12 66622063 66622063 G A IRAK3 Missense_Mutation p.R267Q 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 6669390 6669390 G A NOP2 Nonsense_Mutation p.R588* 0.25 TCGA-AZ-4315-01 12 66856867 66856867 G A GRIP1 Silent p.G293G 0.32 TCGA-AZ-4315-01 12 6708992 6708992 T C CHD4 Missense_Mutation p.N477D 0.27 tolerated(0.15) possibly_damaging(0.874) TCGA-AZ-4315-01 12 6747454 6747454 G A ACRBP Silent p.F542F 0.31 TCGA-AZ-4315-01 12 67699099 67699099 C T CAND1 Missense_Mutation p.R551C 0.26 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 12 6782530 6782530 G T ZNF384 Missense_Mutation p.P255T 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 68053988 68053988 G A DYRK2 3'UTR 0.28 TCGA-AZ-4315-01 12 68055204 68055204 C A DYRK2 3'UTR 0.36 TCGA-AZ-4315-01 12 68055284 68055284 T G DYRK2 3'UTR 0.29 TCGA-AZ-4315-01 12 68055366 68055366 C T DYRK2 3'UTR 0.38 TCGA-AZ-4315-01 12 68553352 68553352 A G IFNG Missense_Mutation p.V15A 0.42 deleterious(0.01) benign(0.328) TCGA-AZ-4315-01 12 68553388 68553388 T C IFNG Missense_Mutation p.Y3C 0.44 tolerated(0.1) possibly_damaging(0.84) TCGA-AZ-4315-01 12 6861137 6861137 T C MLF2 Missense_Mutation p.D45G 0.28 deleterious(0.03) benign(0.134) TCGA-AZ-4315-01 12 68619018 68619018 C A IL26 Missense_Mutation p.D92Y 0.38 deleterious(0.04) probably_damaging(1) TCGA-AZ-4315-01 12 69126419 69126419 G A NUP107 Silent p.E667E 0.22 TCGA-AZ-4315-01 12 69135615 69135615 G T NUP107 Missense_Mutation p.R842I 0.22 deleterious(0) possibly_damaging(0.775) TCGA-AZ-4315-01 12 69653297 69653297 C T CPSF6 Missense_Mutation p.S430L 0.28 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 12 6981243 6981244 - T SPSB2 Intron 0.19 TCGA-AZ-4315-01 12 69968142 69968142 C T FRS2 Silent p.L312L 0.34 TCGA-AZ-4315-01 12 70133638 70133638 A C RAB3IP Missense_Mutation p.K4N 0.34 tolerated_low_confidence(0.21) benign(0) TCGA-AZ-4315-01 12 70954586 70954586 T G PTPRB Missense_Mutation p.K1433Q 0.37 tolerated(0.78) benign(0.02) TCGA-AZ-4315-01 12 71056291 71056291 C T PTPRR Missense_Mutation p.R531Q 0.13 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 12 71147993 71147993 A C PTPRR Missense_Mutation p.V239G 0.30 tolerated(0.1) possibly_damaging(0.582) TCGA-AZ-4315-01 12 72080312 72080312 A C TMEM19 5'UTR 0.43 TCGA-AZ-4315-01 12 72179586 72179586 T C RAB21 3'UTR 0.60 TCGA-AZ-4315-01 12 72290489 72290489 G A TBC1D15 Nonsense_Mutation p.W356* 0.31 TCGA-AZ-4315-01 12 72771779 72771779 G A TRHDE Missense_Mutation p.R353Q 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-AZ-4315-01 12 7280928 7280928 T C RBP5 Missense_Mutation p.T54A 0.31 deleterious(0) benign(0.266) TCGA-AZ-4315-01 12 72863610 72863610 G T TRHDE Missense_Mutation p.R418I 0.35 deleterious(0.03) possibly_damaging(0.552) TCGA-AZ-4315-01 12 74932578 74932578 A G ATXN7L3B 3'UTR 0.24 TCGA-AZ-4315-01 12 7548911 7548911 G A CD163L1 Silent p.D610D 0.27 TCGA-AZ-4315-01 12 7550964 7550964 T C CD163L1 Missense_Mutation p.D542G 0.28 tolerated(0.1) probably_damaging(0.992) TCGA-AZ-4315-01 12 7556206 7556206 G A CD163L1 Missense_Mutation p.L445F 0.31 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 12 7559282 7559282 G A CD163L1 Silent p.F311F 0.41 TCGA-AZ-4315-01 12 75716994 75716994 C T CAPS2 Missense_Mutation p.R66Q 0.33 tolerated(0.39) benign(0.012) TCGA-AZ-4315-01 12 75723669 75723669 A G CAPS2 5'UTR 0.41 TCGA-AZ-4315-01 12 75807467 75807467 C A GLIPR1L2 Nonsense_Mutation p.C190* 0.28 TCGA-AZ-4315-01 12 7640350 7640350 G T CD163 Intron 0.38 TCGA-AZ-4315-01 12 76447003 76447003 A C NAP1L1 Missense_Mutation p.F300V 0.31 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-4315-01 12 76778087 76778087 C T OSBPL8 Missense_Mutation p.R526Q 0.34 deleterious(0) probably_damaging(0.92) TCGA-AZ-4315-01 12 78334114 78334114 G A NAV3 Missense_Mutation p.A87T 0.34 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 12 78400724 78400724 A C NAV3 Missense_Mutation p.E469A 0.33 deleterious(0.01) possibly_damaging(0.631) TCGA-AZ-4315-01 12 78574723 78574723 C T NAV3 Missense_Mutation p.R1842W 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 78593174 78593174 G A NAV3 Missense_Mutation p.R2171Q 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 12 78593213 78593213 G A NAV3 Missense_Mutation p.R2184H 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-AZ-4315-01 12 7869971 7869971 G T DPPA3 3'UTR 0.32 TCGA-AZ-4315-01 12 7922791 7922791 G A NANOGNB Silent p.E105E 0.31 TCGA-AZ-4315-01 12 7942036 7942036 A G NANOG 5'UTR 0.35 TCGA-AZ-4315-01 12 79693259 79693259 C T SYT1 Silent p.V246V 0.33 TCGA-AZ-4315-01 12 8051319 8051319 A G NANOGP1 RNA 0.33 TCGA-AZ-4315-01 12 80714296 80714296 G A OTOGL Silent p.A1290A 0.28 TCGA-AZ-4315-01 12 8075518 8075518 C T SLC2A3 Missense_Mutation p.E391K 0.31 deleterious(0.03) possibly_damaging(0.573) TCGA-AZ-4315-01 12 80838123 80838123 A C PTPRQ 5'Flank 0.31 TCGA-AZ-4315-01 12 80839379 80839379 T C PTPRQ Missense_Mutation p.V91A 0.30 deleterious(0) possibly_damaging(0.749) TCGA-AZ-4315-01 12 81111151 81111151 C T MYF5 Silent p.F103F 0.40 TCGA-AZ-4315-01 12 81528767 81528767 G A ACSS3 Missense_Mutation p.R210H 0.38 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 12 81528783 81528783 G T ACSS3 Missense_Mutation p.K215N 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-AZ-4315-01 12 81734929 81734929 G T PPFIA2 Missense_Mutation p.S774Y 0.29 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 12 81734931 81734931 A C PPFIA2 Silent p.T773T 0.30 TCGA-AZ-4315-01 12 81762621 81762621 C A PPFIA2 Missense_Mutation p.E455D 0.33 deleterious(0.01) probably_damaging(0.911) TCGA-AZ-4315-01 12 82747035 82747035 C A CCDC59 Missense_Mutation p.K207N 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 82796816 82796816 C T METTL25 Nonsense_Mutation p.R396* 0.24 TCGA-AZ-4315-01 12 82850510 82850510 C T METTL25 Missense_Mutation p.R495W 0.24 deleterious(0) possibly_damaging(0.487) TCGA-AZ-4315-01 12 8329638 8329638 C T ZNF705A Missense_Mutation p.S121L 0.42 tolerated(1) benign(0) TCGA-AZ-4315-01 12 8374642 8374642 G A FAM90A1 Missense_Mutation p.P391S 0.19 tolerated(0.17) possibly_damaging(0.862) TCGA-AZ-4315-01 12 85266440 85266440 C A SLC6A15 Nonsense_Mutation p.E415* 0.41 TCGA-AZ-4315-01 12 85439801 85439801 T G LRRIQ1 Missense_Mutation p.L114V 0.34 tolerated(0.06) probably_damaging(0.997) TCGA-AZ-4315-01 12 85449610 85449610 G T LRRIQ1 Nonsense_Mutation p.E347* 0.39 TCGA-AZ-4315-01 12 85450476 85450476 T G LRRIQ1 Missense_Mutation p.I635M 0.32 tolerated(0.06) benign(0.352) TCGA-AZ-4315-01 12 85450598 85450598 A G LRRIQ1 Missense_Mutation p.Y676C 0.32 tolerated(0.18) benign(0.006) TCGA-AZ-4315-01 12 85497824 85497824 A C LRRIQ1 Missense_Mutation p.E1084D 0.26 deleterious(0.01) possibly_damaging(0.708) TCGA-AZ-4315-01 12 85547524 85547524 T A LRRIQ1 Missense_Mutation p.I1542N 0.35 deleterious(0) possibly_damaging(0.889) TCGA-AZ-4315-01 12 86198412 86198412 A C RASSF9 3'UTR 0.29 TCGA-AZ-4315-01 12 8630211 8630211 C T CLEC6A 3'UTR 0.29 TCGA-AZ-4315-01 12 8687173 8687173 G A CLEC4E 3'UTR 0.39 TCGA-AZ-4315-01 12 8803134 8803134 G A MFAP5 Missense_Mutation p.P100L 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 12 88376927 88376927 C T C12orf50 Missense_Mutation p.R391Q 0.28 deleterious(0.01) benign(0.211) TCGA-AZ-4315-01 12 88390201 88390201 G T C12orf50 Missense_Mutation p.A144E 0.31 tolerated(0.86) benign(0.264) TCGA-AZ-4315-01 12 88443063 88443063 T G CEP290 Missense_Mutation p.K2446N 0.34 benign(0.021) TCGA-AZ-4315-01 12 88496897 88496897 C A CEP290 Intron 0.31 TCGA-AZ-4315-01 12 88500853 88500853 C A CEP290 Nonsense_Mutation p.E836* 0.35 TCGA-AZ-4315-01 12 88505556 88505556 C A CEP290 Missense_Mutation p.R711I 0.30 probably_damaging(0.999) TCGA-AZ-4315-01 12 88530538 88530538 C T CEP290 Missense_Mutation p.R108Q 0.41 probably_damaging(0.968) TCGA-AZ-4315-01 12 88542243 88542243 T G TMTC3 Missense_Mutation p.L51V 0.36 tolerated(0.16) possibly_damaging(0.664) TCGA-AZ-4315-01 12 8904626 8904626 G A RIMKLB Silent p.T160T 0.32 TCGA-AZ-4315-01 12 89917529 89917529 G T GALNT4 Missense_Mutation p.F266L 0.11 deleterious(0) possibly_damaging(0.578) TCGA-AZ-4315-01 12 8994024 8994024 T G A2ML1 Missense_Mutation p.I380M 0.33 deleterious(0) possibly_damaging(0.708) TCGA-AZ-4315-01 12 90020280 90020280 A C ATP2B1 Silent p.S360S 0.26 TCGA-AZ-4315-01 12 9089483 9089483 C T PHC1 Silent p.C800C 0.22 TCGA-AZ-4315-01 12 91396344 91396344 T G EPYC 5'UTR 0.41 TCGA-AZ-4315-01 12 91502039 91502039 C T LUM Missense_Mutation p.E240K 0.37 tolerated(1) benign(0.007) TCGA-AZ-4315-01 12 91539702 91539702 T G DCN 3'UTR 0.33 TCGA-AZ-4315-01 12 93171935 93171935 C A EEA1 Missense_Mutation p.K1225N 0.38 deleterious(0.01) benign(0.329) TCGA-AZ-4315-01 12 9353513 9353513 C T PZP Silent p.Q215Q 0.31 TCGA-AZ-4315-01 12 93835730 93835730 C T UBE2N 5'UTR 0.38 TCGA-AZ-4315-01 12 93895025 93895025 G T MRPL42 3'UTR 0.41 TCGA-AZ-4315-01 12 94692529 94692529 A C PLXNC1 Missense_Mutation p.K1399T 0.40 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 12 94697535 94697535 G A PLXNC1 Missense_Mutation p.A1464T 0.24 deleterious(0.05) probably_damaging(0.994) TCGA-AZ-4315-01 12 94697645 94697645 G T PLXNC1 Missense_Mutation p.M1500I 0.38 tolerated(0.25) benign(0.05) TCGA-AZ-4315-01 12 95535231 95535231 A C FGD6 Missense_Mutation p.Y924D 0.34 deleterious(0.02) benign(0.309) TCGA-AZ-4315-01 12 95603582 95603582 C T FGD6 Missense_Mutation p.R493Q 0.29 deleterious(0) possibly_damaging(0.477) TCGA-AZ-4315-01 12 95660169 95660169 C T VEZT Silent p.L157L 0.28 TCGA-AZ-4315-01 12 95887866 95887866 A C METAP2 Missense_Mutation p.K155Q 0.44 deleterious(0) benign(0.204) TCGA-AZ-4315-01 12 95907739 95907739 A G METAP2 3'UTR 0.22 TCGA-AZ-4315-01 12 95911989 95911989 A G USP44 Silent p.L694L 0.29 TCGA-AZ-4315-01 12 96272105 96272105 G T CCDC38 Missense_Mutation p.L388I 0.25 deleterious(0.05) benign(0.176) TCGA-AZ-4315-01 12 96370240 96370240 G A HAL Silent p.I600I 0.34 TCGA-AZ-4315-01 12 96617487 96617487 G A ELK3 Missense_Mutation p.R48Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 12 96673888 96673888 G A CDK17 3'UTR 0.31 TCGA-AZ-4315-01 12 968557 968557 A G WNK1 Missense_Mutation p.Y516C 0.22 deleterious(0) unknown(0) TCGA-AZ-4315-01 12 97085030 97085030 T C C12orf55 Missense_Mutation p.V2069A 0.33 deleterious(0.01) benign(0) TCGA-AZ-4315-01 12 97137813 97137813 G T C12orf55 Nonsense_Mutation p.E2525* 0.34 TCGA-AZ-4315-01 12 97303532 97303532 G A NEDD1 Missense_Mutation p.A6T 0.29 tolerated_low_confidence(0.23) benign(0.029) TCGA-AZ-4315-01 12 97334208 97334208 C G NEDD1 Missense_Mutation p.T387R 0.33 tolerated(0.23) possibly_damaging(0.571) TCGA-AZ-4315-01 12 9751133 9751133 C A KLRB1 Nonsense_Mutation p.E126* 0.36 TCGA-AZ-4315-01 12 9885587 9885587 G A CLECL1 Missense_Mutation p.R92W 0.27 deleterious(0) possibly_damaging(0.632) TCGA-AZ-4315-01 12 98926910 98926910 C A TMPO Missense_Mutation p.S292Y 0.31 deleterious_low_confidence(0) possibly_damaging(0.564) TCGA-AZ-4315-01 12 98926913 98926913 C T TMPO Missense_Mutation p.S293L 0.32 deleterious_low_confidence(0) benign(0.122) TCGA-AZ-4315-01 12 98928153 98928153 C A TMPO 3'UTR 0.54 TCGA-AZ-4315-01 12 99007928 99007928 G A IKBIP Missense_Mutation p.S163F 0.32 deleterious(0.03) benign(0.118) TCGA-AZ-4315-01 12 99019938 99019938 T C IKBIP Missense_Mutation p.M302V 0.34 tolerated(0.68) benign(0.001) TCGA-AZ-4315-01 12 9906060 9906060 G A CD69 3'UTR 0.30 TCGA-AZ-4315-01 12 9907270 9907270 T C CD69 Missense_Mutation p.Y135C 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-AZ-4315-01 12 99093197 99093197 G A APAF1 Silent p.A772A 0.28 TCGA-AZ-4315-01 12 99478702 99478702 C G ANKS1B Splice_Site p.X875_splice 0.24 TCGA-AZ-4315-01 13 100190112 100190112 G A TM9SF2 Silent p.P237P 0.30 TCGA-AZ-4315-01 13 100925473 100925473 G A PCCA Missense_Mutation p.R313Q 0.26 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 13 101707538 101707538 A G NALCN 3'UTR 0.21 TCGA-AZ-4315-01 13 101910907 101910907 C T NALCN Missense_Mutation p.V385I 0.29 tolerated(0.37) benign(0.001) TCGA-AZ-4315-01 13 102374920 102374920 G T FGF14 3'UTR 0.32 TCGA-AZ-4315-01 13 103383039 103383039 C T CCDC168 Missense_Mutation p.E2041K 0.36 tolerated(0.27) unknown(0) TCGA-AZ-4315-01 13 103384068 103384068 C T CCDC168 Missense_Mutation p.E1698K 0.31 tolerated(0.17) unknown(0) TCGA-AZ-4315-01 13 103385293 103385293 C T CCDC168 Silent p.P1289P 0.29 TCGA-AZ-4315-01 13 103396965 103396965 C T LINC00283 RNA 0.30 TCGA-AZ-4315-01 13 103418816 103418816 C A TEX30 Nonsense_Mutation p.E207* 0.10 TCGA-AZ-4315-01 13 103420626 103420626 T C TEX30 Silent p.A94A 0.12 TCGA-AZ-4315-01 13 103422451 103422451 C A TEX30 Intron 0.39 TCGA-AZ-4315-01 13 103473405 103473405 A C BIVM-ERCC5 Silent p.P180P 0.33 TCGA-AZ-4315-01 13 103498683 103498683 G A ERCC5 Missense_Mutation p.E23K 0.41 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 13 103515141 103515141 G A BIVM-ERCC5 Missense_Mutation p.E974K 0.24 tolerated_low_confidence(0.3) benign(0.002) TCGA-AZ-4315-01 13 103528120 103528120 C T ERCC5 Missense_Mutation p.A1143V 0.34 tolerated(0.36) benign(0.002) TCGA-AZ-4315-01 13 103698367 103698367 A C SLC10A2 3'UTR 0.41 TCGA-AZ-4315-01 13 106142450 106142450 C T DAOA 3'UTR 0.32 TCGA-AZ-4315-01 13 107165142 107165142 T C EFNB2 Silent p.G47G 0.34 TCGA-AZ-4315-01 13 107210041 107210041 A G ARGLU1 Intron 0.45 TCGA-AZ-4315-01 13 107822751 107822751 C T FAM155A 3'UTR 0.45 TCGA-AZ-4315-01 13 108860848 108860848 G A LIG4 3'UTR 0.26 TCGA-AZ-4315-01 13 110436784 110436784 G T IRS2 Missense_Mutation p.F539L 0.53 tolerated(1) benign(0) TCGA-AZ-4315-01 13 111077155 111077155 A G COL4A2 Silent p.G85G 0.42 TCGA-AZ-4315-01 13 111545431 111545431 C T ANKRD10 Missense_Mutation p.R212Q 0.29 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 13 111944718 111944718 C T ARHGEF7 3'UTR 0.45 TCGA-AZ-4315-01 13 112724675 112724675 A T SOX1 3'UTR 0.25 TCGA-AZ-4315-01 13 112724948 112724948 T A SOX1 3'UTR 0.35 TCGA-AZ-4315-01 13 112725207 112725207 C A SOX1 3'UTR 0.31 TCGA-AZ-4315-01 13 113088809 113088809 C A SPACA7 Missense_Mutation p.F178L 0.33 tolerated_low_confidence(0.14) possibly_damaging(0.682) TCGA-AZ-4315-01 13 113088961 113088961 C A SPACA7 3'UTR 0.32 TCGA-AZ-4315-01 13 114077254 114077254 G A ADPRHL1 Silent p.F316F 0.13 TCGA-AZ-4315-01 13 114157828 114157828 G T TMCO3 Missense_Mutation p.E321D 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 13 114157881 114157881 T G TMCO3 Missense_Mutation p.F339C 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 13 114305995 114305995 G A ATP4B Silent p.C201C 0.35 TCGA-AZ-4315-01 13 114307313 114307313 C T ATP4B Missense_Mutation p.A144T 0.30 tolerated(0.2) possibly_damaging(0.908) TCGA-AZ-4315-01 13 114322097 114322097 G A GRK1 Silent p.A132A 0.27 TCGA-AZ-4315-01 13 115037692 115037692 A G CDC16 Missense_Mutation p.D546G 0.39 tolerated_low_confidence(0.07) benign(0.187) TCGA-AZ-4315-01 13 19751484 19751484 A G TUBA3C Silent p.C213C 0.31 TCGA-AZ-4315-01 13 19751584 19751584 G A TUBA3C Missense_Mutation p.A180V 0.31 deleterious_low_confidence(0) benign(0.394) TCGA-AZ-4315-01 13 20038603 20038603 G T TPTE2 Missense_Mutation p.P245Q 0.32 deleterious(0) probably_damaging(0.964) TCGA-AZ-4315-01 13 20220717 20220718 - C MPHOSPH8 Frame_Shift_Ins p.K169Qfs*28 0.26 TCGA-AZ-4315-01 13 20611051 20611051 C T ZMYM2 Splice_Site p.X764_splice 0.31 TCGA-AZ-4315-01 13 21265261 21265261 G A IFT88 Missense_Mutation p.D817N 0.34 tolerated(0.43) benign(0.002) TCGA-AZ-4315-01 13 21311931 21311931 A C N6AMT2 Missense_Mutation p.F53C 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 13 21331636 21331636 G A N6AMT2 Silent p.G34G 0.22 TCGA-AZ-4315-01 13 21429888 21429888 G A XPO4 Missense_Mutation p.R112W 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 13 21751679 21751679 A G MRP63 3'UTR 0.08 TCGA-AZ-4315-01 13 21752781 21752781 G A MRP63 3'UTR 0.39 TCGA-AZ-4315-01 13 21753193 21753193 G A MRP63 3'UTR 0.23 TCGA-AZ-4315-01 13 21987882 21987882 A G ZDHHC20 Silent p.R93R 0.30 TCGA-AZ-4315-01 13 23853577 23853577 G T SGCG Missense_Mutation p.E155D 0.20 tolerated(0.28) benign(0.074) TCGA-AZ-4315-01 13 23853608 23853608 C T SGCG Nonsense_Mutation p.R166* 0.19 TCGA-AZ-4315-01 13 23907634 23907634 C A SACS Nonsense_Mutation p.E3461* 0.32 TCGA-AZ-4315-01 13 23907687 23907687 T G SACS Missense_Mutation p.K3443T 0.28 benign(0.176) TCGA-AZ-4315-01 13 23909874 23909874 G A SACS Missense_Mutation p.S2714L 0.18 probably_damaging(0.992) TCGA-AZ-4315-01 13 23912372 23912372 G T SACS Silent p.G1881G 0.29 TCGA-AZ-4315-01 13 23915740 23915740 C A SACS Nonsense_Mutation p.E759* 0.33 TCGA-AZ-4315-01 13 24304457 24304457 C T MIPEP 3'UTR 0.39 TCGA-AZ-4315-01 13 25367256 25367256 G A RNF17 Missense_Mutation p.D338N 0.28 tolerated(0.43) possibly_damaging(0.463) TCGA-AZ-4315-01 13 25370352 25370352 G A RNF17 Missense_Mutation p.D440N 0.37 tolerated(0.16) possibly_damaging(0.892) TCGA-AZ-4315-01 13 25463526 25463526 G A CENPJ Nonsense_Mutation p.R1077* 0.44 TCGA-AZ-4315-01 13 25480774 25480774 G T CENPJ Missense_Mutation p.L468I 0.29 tolerated(0.75) benign(0.01) TCGA-AZ-4315-01 13 26104171 26104171 C T ATP8A2 Nonsense_Mutation p.R86* 0.33 TCGA-AZ-4315-01 13 26104698 26104698 A G ATP8A2 Splice_Site p.X108_splice 0.43 TCGA-AZ-4315-01 13 26129159 26129159 A G ATP8A2 Missense_Mutation p.T406A 0.26 deleterious(0.01) benign(0.373) TCGA-AZ-4315-01 13 26789129 26789129 C A RNF6 Missense_Mutation p.R297I 0.13 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 13 26927898 26927898 G A CDK8 Missense_Mutation p.A113T 0.29 tolerated(0.2) benign(0.058) TCGA-AZ-4315-01 13 27255319 27255319 C T WASF3 Missense_Mutation p.A282V 0.29 tolerated(0.31) benign(0.001) TCGA-AZ-4315-01 13 27260125 27260125 C A WASF3 3'UTR 0.40 TCGA-AZ-4315-01 13 27333242 27333242 C T GPR12 Silent p.S241S 0.34 TCGA-AZ-4315-01 13 28197151 28197151 C T POLR1D Missense_Mutation p.R56C 0.34 deleterious(0.02) benign(0.09) TCGA-AZ-4315-01 13 28240041 28240041 G A POLR1D Missense_Mutation p.R107Q 0.20 tolerated_low_confidence(0.05) benign(0.078) TCGA-AZ-4315-01 13 28608055 28608055 G T FLT3 Silent p.V637V 0.36 TCGA-AZ-4315-01 13 28862245 28862245 T G PAN3 Missense_Mutation p.S837A 0.25 tolerated(0.13) possibly_damaging(0.57) TCGA-AZ-4315-01 13 28886182 28886182 A C FLT1 Missense_Mutation p.F1147C 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 13 28963942 28963942 T C FLT1 Missense_Mutation p.T654A 0.33 tolerated(0.19) benign(0.15) TCGA-AZ-4315-01 13 29012441 29012441 C T FLT1 Missense_Mutation p.E144K 0.36 tolerated(0.41) benign(0.021) TCGA-AZ-4315-01 13 29284907 29284907 C T SLC46A3 Silent p.S378S 0.22 TCGA-AZ-4315-01 13 29600074 29600074 A C MTUS2 Missense_Mutation p.K423N 0.11 deleterious(0.01) benign(0.003) TCGA-AZ-4315-01 13 30014150 30014150 C T MTUS2 Silent p.L1060L 0.30 TCGA-AZ-4315-01 13 31035754 31035754 G T HMGB1 Intron 0.26 TCGA-AZ-4315-01 13 31232879 31232879 C T USPL1 Missense_Mutation p.R889C 0.48 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 13 31495898 31495898 G A MEDAG Silent p.T234T 0.24 TCGA-AZ-4315-01 13 31725284 31725284 G A HSPH1 Silent p.F236F 0.33 TCGA-AZ-4315-01 13 31860885 31860885 G T B3GALTL Missense_Mutation p.L331F 0.30 deleterious(0.03) possibly_damaging(0.819) TCGA-AZ-4315-01 13 32313740 32313740 C A RXFP2 5'UTR 0.27 TCGA-AZ-4315-01 13 32351581 32351581 T C RXFP2 Missense_Mutation p.F237S 0.36 deleterious(0.02) benign(0.248) TCGA-AZ-4315-01 13 32721489 32721489 G A FRY Missense_Mutation p.R417Q 0.49 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 13 32753046 32753046 G T FRY Missense_Mutation p.R916I 0.27 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 13 32776159 32776159 C T FRY Silent p.I1276I 0.42 TCGA-AZ-4315-01 13 32783857 32783857 C A FRY Missense_Mutation p.L1471I 0.30 deleterious(0) probably_damaging(0.915) TCGA-AZ-4315-01 13 32814019 32814019 G A FRY Splice_Site p.X2229_splice 0.33 TCGA-AZ-4315-01 13 32906408 32906408 G A BRCA2 Splice_Site p.X265_splice 0.32 TCGA-AZ-4315-01 13 32910414 32910414 C A BRCA2 Missense_Mutation p.S641Y 0.26 deleterious(0.03) benign(0.11) TCGA-AZ-4315-01 13 32930688 32930688 G A BRCA2 Missense_Mutation p.R2520Q 0.31 deleterious(0) possibly_damaging(0.848) TCGA-AZ-4315-01 13 32953557 32953557 A C BRCA2 Missense_Mutation p.E2953A 0.16 tolerated(0.13) benign(0.255) TCGA-AZ-4315-01 13 33091964 33091964 C T N4BP2L2 Intron 0.40 TCGA-AZ-4315-01 13 33110525 33110525 G T N4BP2L2 Intron 0.13 TCGA-AZ-4315-01 13 33275565 33275565 G A PDS5B Missense_Mutation p.E616K 0.30 deleterious(0.04) possibly_damaging(0.786) TCGA-AZ-4315-01 13 33638039 33638039 G A KL Missense_Mutation p.D919N 0.32 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 13 33704353 33704353 G T STARD13 Missense_Mutation p.S154Y 0.50 deleterious(0) possibly_damaging(0.878) TCGA-AZ-4315-01 13 35622814 35622814 C A NBEA Missense_Mutation p.L280I 0.26 tolerated(0.06) benign(0.252) TCGA-AZ-4315-01 13 35731365 35731365 C A NBEA Silent p.G934G 0.37 TCGA-AZ-4315-01 13 35751132 35751132 G A NBEA Splice_Site p.X1519_splice 0.27 TCGA-AZ-4315-01 13 36050158 36050158 C T MAB21L1 Missense_Mutation p.D40N 0.24 tolerated(0.1) benign(0.361) TCGA-AZ-4315-01 13 36158125 36158125 A C NBEA Missense_Mutation p.N2376H 0.33 deleterious(0) possibly_damaging(0.512) TCGA-AZ-4315-01 13 36367593 36367593 T C DCLK1 Silent p.E656E 0.29 TCGA-AZ-4315-01 13 36396899 36396899 G A DCLK1 Silent p.I507I 0.34 TCGA-AZ-4315-01 13 36402442 36402442 G A DCLK1 Missense_Mutation p.S411L 0.24 deleterious(0.02) possibly_damaging(0.519) TCGA-AZ-4315-01 13 36410201 36410201 T G DCLK1 Missense_Mutation p.N400H 0.36 deleterious(0) possibly_damaging(0.844) TCGA-AZ-4315-01 13 36429675 36429675 C A DCLK1 Intron 0.39 TCGA-AZ-4315-01 13 36747838 36747838 C T SOHLH2 Missense_Mutation p.A408T 0.31 tolerated_low_confidence(0.16) benign(0.004) TCGA-AZ-4315-01 13 36776141 36776141 G T SOHLH2 Silent p.V123V 0.23 TCGA-AZ-4315-01 13 36886586 36886586 G A SPG20 Silent p.C504C 0.29 TCGA-AZ-4315-01 13 36905585 36905585 C A SPG20 Missense_Mutation p.R320I 0.35 deleterious(0) benign(0.094) TCGA-AZ-4315-01 13 37012299 37012299 G T CCNA1 Nonsense_Mutation p.E214* 0.13 TCGA-AZ-4315-01 13 37622722 37622722 T C SUPT20H Silent p.E6E 0.26 TCGA-AZ-4315-01 13 37678626 37678626 G A CSNK1A1L Silent p.F256F 0.33 TCGA-AZ-4315-01 13 37679759 37679759 G A CSNK1A1L 5'UTR 0.42 TCGA-AZ-4315-01 13 38158918 38158918 T G POSTN Missense_Mutation p.K348T 0.29 deleterious(0.05) benign(0.217) TCGA-AZ-4315-01 13 38160289 38160289 T G POSTN Missense_Mutation p.K294N 0.33 tolerated(0.2) probably_damaging(0.999) TCGA-AZ-4315-01 13 38211598 38211598 C A TRPC4 Missense_Mutation p.K797N 0.38 tolerated(0.14) benign(0.005) TCGA-AZ-4315-01 13 38237609 38237609 C T TRPC4 Silent p.T544T 0.29 TCGA-AZ-4315-01 13 39263543 39263543 C T FREM2 Missense_Mutation p.R688W 0.42 deleterious(0.02) possibly_damaging(0.588) TCGA-AZ-4315-01 13 39264767 39264767 G A FREM2 Missense_Mutation p.D1096N 0.41 deleterious(0.01) probably_damaging(0.949) TCGA-AZ-4315-01 13 39265420 39265420 A G FREM2 Silent p.E1313E 0.38 TCGA-AZ-4315-01 13 39420746 39420746 T C FREM2 Missense_Mutation p.V2019A 0.32 deleterious(0.04) probably_damaging(0.983) TCGA-AZ-4315-01 13 39420830 39420830 C T FREM2 Missense_Mutation p.S2047F 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 13 39425866 39425866 A G FREM2 Silent p.E2262E 0.22 TCGA-AZ-4315-01 13 39430306 39430306 C T FREM2 Silent p.I2323I 0.38 TCGA-AZ-4315-01 13 39438677 39438677 C T FREM2 Silent p.F2639F 0.32 TCGA-AZ-4315-01 13 39451349 39451349 C T FREM2 Silent p.F2880F 0.34 TCGA-AZ-4315-01 13 39616246 39616246 C A NHLRC3 Missense_Mutation p.F130L 0.40 tolerated(0.28) benign(0) TCGA-AZ-4315-01 13 39622183 39622183 G T NHLRC3 3'UTR 0.62 TCGA-AZ-4315-01 13 40229983 40229983 T C COG6 Silent p.H40H 0.32 TCGA-AZ-4315-01 13 40261743 40261743 G T COG6 Nonsense_Mutation p.E298* 0.22 TCGA-AZ-4315-01 13 41341037 41341037 C T MRPS31 Silent p.T95T 0.31 TCGA-AZ-4315-01 13 41767894 41767894 C T KBTBD7 Missense_Mutation p.R167H 0.33 tolerated(0.12) probably_damaging(0.992) TCGA-AZ-4315-01 13 41892943 41892943 G T NAA16 Missense_Mutation p.E47D 0.38 deleterious(0) possibly_damaging(0.725) TCGA-AZ-4315-01 13 42044633 42044633 C T RGCC 3'UTR 0.24 TCGA-AZ-4315-01 13 42293537 42293537 A G VWA8 Intron 0.37 TCGA-AZ-4315-01 13 42293845 42293845 G A VWA8 Nonsense_Mutation p.R1000* 0.28 TCGA-AZ-4315-01 13 42769148 42769148 C T DGKH Silent p.C721C 0.21 TCGA-AZ-4315-01 13 43180767 43180767 C T TNFSF11 Nonsense_Mutation p.R223* 0.28 TCGA-AZ-4315-01 13 43180974 43180974 G A TNFSF11 Missense_Mutation p.E292K 0.37 tolerated(0.11) benign(0.052) TCGA-AZ-4315-01 13 43537455 43537455 A G EPSTI1 Missense_Mutation p.V142A 0.35 tolerated(0.31) benign(0.058) TCGA-AZ-4315-01 13 43896593 43896593 G A ENOX1 Silent p.R396R 0.42 TCGA-AZ-4315-01 13 44463073 44463073 T G LACC1 Missense_Mutation p.L363R 0.34 tolerated(0.52) benign(0.158) TCGA-AZ-4315-01 13 45148690 45148690 C A TSC22D1 Missense_Mutation p.Q507H 0.37 tolerated(0.05) benign(0.342) TCGA-AZ-4315-01 13 45150155 45150155 G A TSC22D1 Missense_Mutation p.A19V 0.22 tolerated_low_confidence(0.18) benign(0.272) TCGA-AZ-4315-01 13 45515406 45515406 G A NUFIP1 Missense_Mutation p.R475W 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 13 45965274 45965274 C A SLC25A30 3'Flank 0.61 TCGA-AZ-4315-01 13 46542938 46542938 T G ZC3H13 Missense_Mutation p.R1247S 0.52 unknown(0) TCGA-AZ-4315-01 13 46802063 46802063 G A LRRC63 Missense_Mutation p.A168T 0.30 tolerated(1) benign(0.001) TCGA-AZ-4315-01 13 47011610 47011610 C A PPP1R2P4 RNA 0.33 TCGA-AZ-4315-01 13 47011649 47011649 C A PPP1R2P4 RNA 0.40 TCGA-AZ-4315-01 13 48835536 48835536 C T ITM2B 3'UTR 0.27 TCGA-AZ-4315-01 13 48985846 48985846 G T LPAR6 Missense_Mutation p.F238L 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 13 49281769 49281769 G A CYSLTR2 Silent p.T272T 0.56 TCGA-AZ-4315-01 13 49282054 49282054 C A CYSLTR2 3'UTR 0.43 TCGA-AZ-4315-01 13 49833522 49833522 T G CDADC1 Missense_Mutation p.I98S 0.34 deleterious(0) possibly_damaging(0.868) TCGA-AZ-4315-01 13 49852594 49852594 G T CDADC1 Missense_Mutation p.D387Y 0.30 deleterious(0) probably_damaging(0.943) TCGA-AZ-4315-01 13 50080832 50080832 C T PHF11 Silent p.V52V 0.26 TCGA-AZ-4315-01 13 50118958 50118958 C A RCBTB1 Nonsense_Mutation p.E363* 0.16 TCGA-AZ-4315-01 13 50206168 50206168 G A ARL11 3'UTR 0.37 TCGA-AZ-4315-01 13 50587069 50587069 T C TRIM13 Silent p.G334G 0.27 TCGA-AZ-4315-01 13 50589903 50589903 C T KCNRG Missense_Mutation p.R92C 0.34 tolerated(0.17) benign(0.213) TCGA-AZ-4315-01 13 50590899 50590899 C T TRIM13 3'Flank 0.39 TCGA-AZ-4315-01 13 51530751 51530751 T G RNASEH2B 3'UTR 0.38 TCGA-AZ-4315-01 13 51544196 51544196 C T RNASEH2B 3'UTR 0.24 TCGA-AZ-4315-01 13 51825659 51825659 C T FAM124A Silent p.I88I 0.31 TCGA-AZ-4315-01 13 51921300 51921300 G T SERPINE3 Silent p.L210L 0.35 TCGA-AZ-4315-01 13 51952377 51952377 T C INTS6 Missense_Mutation p.K534E 0.32 deleterious(0.03) probably_damaging(0.985) TCGA-AZ-4315-01 13 52293466 52293466 C T WDFY2 Missense_Mutation p.A156V 0.38 tolerated(0.07) benign(0.166) TCGA-AZ-4315-01 13 52549003 52549003 T C ATP7B Missense_Mutation p.D118G 0.36 tolerated(0.24) benign(0.052) TCGA-AZ-4315-01 13 52598972 52598972 A G ALG11 Missense_Mutation p.Y369C 0.25 deleterious(0.03) possibly_damaging(0.563) TCGA-AZ-4315-01 13 52605414 52605414 G T UTP14C 3'UTR 0.24 TCGA-AZ-4315-01 13 53030724 53030724 A G CKAP2 Missense_Mutation p.E46G 0.31 deleterious(0.02) benign(0.295) TCGA-AZ-4315-01 13 53042436 53042436 G A CKAP2 Silent p.T501T 0.26 TCGA-AZ-4315-01 13 53254287 53254287 C A SUGT1 Silent p.S331S 0.31 TCGA-AZ-4315-01 13 53419051 53419051 C T PCDH8 Missense_Mutation p.A953T 0.42 tolerated(0.18) benign(0.404) TCGA-AZ-4315-01 13 58206654 58206654 C A PCDH17 5'Flank 0.42 TCGA-AZ-4315-01 13 58207569 58207569 G A PCDH17 Missense_Mutation p.D297N 0.33 tolerated(0.07) probably_damaging(1) TCGA-AZ-4315-01 13 58207713 58207713 A G PCDH17 Missense_Mutation p.N345D 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 13 61103095 61103095 G A TDRD3 Missense_Mutation p.R579Q 0.34 tolerated(0.32) benign(0.013) TCGA-AZ-4315-01 13 61986439 61986439 T C PCDH20 Missense_Mutation p.D598G 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 13 66878680 66878680 C T PCDH9 3'UTR 0.35 TCGA-AZ-4315-01 13 66878836 66878836 T C PCDH9 Missense_Mutation p.Y1222C 0.25 tolerated(0.13) benign(0.001) TCGA-AZ-4315-01 13 67800570 67800570 A G PCDH9 Missense_Mutation p.V668A 0.37 tolerated(0.24) benign(0.021) TCGA-AZ-4315-01 13 67801843 67801843 C A PCDH9 Missense_Mutation p.D244Y 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 13 67801948 67801948 T C PCDH9 Missense_Mutation p.N209D 0.26 tolerated(0.5) benign(0.309) TCGA-AZ-4315-01 13 70413148 70413148 G A KLHL1 Silent p.V458V 0.29 TCGA-AZ-4315-01 13 70456474 70456474 T G KLHL1 Silent p.R390R 0.35 TCGA-AZ-4315-01 13 70535554 70535554 C T KLHL1 Missense_Mutation p.D235N 0.32 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 13 72053445 72053445 G A DACH1 Silent p.L578L 0.30 TCGA-AZ-4315-01 13 73335626 73335626 C T DIS3 Missense_Mutation p.E849K 0.31 deleterious(0.03) benign(0.05) TCGA-AZ-4315-01 13 73340141 73340141 C T DIS3 Missense_Mutation p.D647N 0.48 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 13 76395516 76395516 G A LMO7 Missense_Mutation p.R571H 0.28 tolerated(0.51) benign(0) TCGA-AZ-4315-01 13 76431893 76431893 C T LMO7 Intron 0.50 TCGA-AZ-4315-01 13 77570183 77570183 C T CLN5 Silent p.G211G 0.25 TCGA-AZ-4315-01 13 77581509 77581509 C T FBXL3 Missense_Mutation p.R353H 0.37 tolerated(0.59) benign(0.317) TCGA-AZ-4315-01 13 77581593 77581593 C T FBXL3 Missense_Mutation p.G325D 0.28 tolerated(0.06) probably_damaging(0.935) TCGA-AZ-4315-01 13 77641954 77641954 G A MYCBP2 Missense_Mutation p.R4035C 0.21 benign(0.186) TCGA-AZ-4315-01 13 77644772 77644772 T G MYCBP2 Missense_Mutation p.Q3928H 0.26 probably_damaging(0.983) TCGA-AZ-4315-01 13 77798654 77798654 T G MYCBP2 Missense_Mutation p.E919D 0.36 benign(0.001) TCGA-AZ-4315-01 13 78218517 78218517 T G SCEL 3'UTR 0.43 TCGA-AZ-4315-01 13 78335218 78335218 G A SLAIN1 Missense_Mutation p.R393Q 0.27 deleterious(0) possibly_damaging(0.776) TCGA-AZ-4315-01 13 79952976 79952976 T G RBM26 Missense_Mutation p.E46D 0.35 tolerated(0.06) unknown(0) TCGA-AZ-4315-01 13 84453871 84453871 G A SLITRK1 Missense_Mutation p.S591L 0.33 deleterious(0.04) benign(0.009) TCGA-AZ-4315-01 13 84454732 84454732 G T SLITRK1 Missense_Mutation p.A304D 0.29 tolerated(0.57) benign(0.09) TCGA-AZ-4315-01 13 84455375 84455375 C T SLITRK1 Missense_Mutation p.E90K 0.31 deleterious(0.01) benign(0.379) TCGA-AZ-4315-01 13 86370595 86370595 A G SLITRK6 Missense_Mutation p.S17P 0.31 tolerated(0.37) benign(0.001) TCGA-AZ-4315-01 13 88327835 88327835 C T SLITRK5 Silent p.S64S 0.28 TCGA-AZ-4315-01 13 88329270 88329270 T G SLITRK5 Missense_Mutation p.L543V 0.31 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 13 88330793 88330793 C T SLITRK5 3'UTR 0.31 TCGA-AZ-4315-01 13 88331393 88331393 G T SLITRK5 3'UTR 0.28 TCGA-AZ-4315-01 13 94938667 94938667 G A GPC6 Silent p.P314P 0.33 TCGA-AZ-4315-01 13 95092024 95092024 C A DCT 3'UTR 0.31 TCGA-AZ-4315-01 13 95092051 95092051 G A DCT 3'UTR 0.32 TCGA-AZ-4315-01 13 95092216 95092216 C T DCT Missense_Mutation p.R532Q 0.34 tolerated(0.09) benign(0.059) TCGA-AZ-4315-01 13 95131599 95131599 C A DCT 5'UTR 0.38 TCGA-AZ-4315-01 13 95838997 95838997 C A ABCC4 Missense_Mutation p.K501N 0.35 tolerated(0.07) benign(0.099) TCGA-AZ-4315-01 13 95899291 95899291 T G ABCC4 Silent p.R82R 0.28 TCGA-AZ-4315-01 13 96242612 96242612 T C DZIP1 Missense_Mutation p.I588M 0.37 tolerated(0.38) benign(0.021) TCGA-AZ-4315-01 13 96546834 96546834 A C UGGT2 Missense_Mutation p.F946C 0.16 deleterious(0.02) probably_damaging(0.981) TCGA-AZ-4315-01 13 97639218 97639218 C T OXGR1 Missense_Mutation p.E266K 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4315-01 13 97928447 97928447 T C MBNL2 5'UTR 0.39 TCGA-AZ-4315-01 13 98018776 98018776 T C MBNL2 Missense_Mutation p.V353A 0.34 deleterious(0) benign(0.347) TCGA-AZ-4315-01 13 98828189 98828189 G A RNF113B 3'UTR 0.29 TCGA-AZ-4315-01 13 99100632 99100632 T G FARP1 3'UTR 0.38 TCGA-AZ-4315-01 13 99378462 99378462 C T SLC15A1 Missense_Mutation p.A54T 0.36 tolerated(0.26) benign(0.017) TCGA-AZ-4315-01 13 99505747 99505747 G A DOCK9 Silent p.S1287S 0.27 TCGA-AZ-4315-01 13 99534150 99534150 T C DOCK9 Missense_Mutation p.T891A 0.34 deleterious(0.02) probably_damaging(0.954) TCGA-AZ-4315-01 13 99947066 99947066 C T GPR183 3'UTR 0.33 TCGA-AZ-4315-01 14 100192961 100192961 G A CYP46A1 Missense_Mutation p.R467H 0.35 deleterious(0.03) possibly_damaging(0.473) TCGA-AZ-4315-01 14 100610070 100610070 A G EVL Missense_Mutation p.T418A 0.33 deleterious(0) benign(0.081) TCGA-AZ-4315-01 14 100934477 100934477 C T WDR25 Silent p.F314F 0.29 TCGA-AZ-4315-01 14 100950404 100950404 C A WDR25 Silent p.I348I 0.27 TCGA-AZ-4315-01 14 101005446 101005446 C A BEGAIN Missense_Mutation p.E214D 0.37 tolerated(0.51) benign(0.005) TCGA-AZ-4315-01 14 101005472 101005472 C T BEGAIN Missense_Mutation p.D206N 0.09 tolerated(0.09) possibly_damaging(0.804) TCGA-AZ-4315-01 14 101348236 101348236 C T RTL1 Missense_Mutation p.V964I 0.33 tolerated(0.24) probably_damaging(0.992) TCGA-AZ-4315-01 14 101492104 101492104 G A MIR323A RNA 0.32 TCGA-AZ-4315-01 14 101495978 101495978 G A MIR494 RNA 0.35 TCGA-AZ-4315-01 14 101500126 101500126 G A MIR495 RNA 0.31 TCGA-AZ-4315-01 14 101509363 101509363 C T MIR1185-1 RNA 0.29 TCGA-AZ-4315-01 14 101512840 101512840 C T MIR487B RNA 0.39 TCGA-AZ-4315-01 14 101533133 101533133 C T MIR656 RNA 0.38 TCGA-AZ-4315-01 14 102028563 102028563 G A DIO3 Missense_Mutation p.D244N 0.24 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 14 102446181 102446181 A G DYNC1H1 Missense_Mutation p.N215S 0.35 benign(0.002) TCGA-AZ-4315-01 14 102460553 102460553 G T DYNC1H1 Missense_Mutation p.E1016D 0.37 benign(0.003) TCGA-AZ-4315-01 14 102467295 102467295 G A DYNC1H1 Missense_Mutation p.R1360Q 0.35 probably_damaging(1) TCGA-AZ-4315-01 14 102468921 102468921 C A DYNC1H1 Silent p.I1530I 0.28 TCGA-AZ-4315-01 14 102548079 102548079 G A HSP90AA1 Silent p.D845D 0.26 TCGA-AZ-4315-01 14 102717154 102717154 G A MOK Silent p.I195I 0.42 TCGA-AZ-4315-01 14 102793156 102793156 C T ZNF839 Missense_Mutation p.P375S 0.32 tolerated(0.12) possibly_damaging(0.833) TCGA-AZ-4315-01 14 103449947 103449947 C T CDC42BPB Silent p.T279T 0.30 TCGA-AZ-4315-01 14 104026145 104026145 G A BAG5 3'UTR 0.46 TCGA-AZ-4315-01 14 104199662 104199662 C T ZFYVE21 3'UTR 0.45 TCGA-AZ-4315-01 14 104251167 104251167 C T PPP1R13B Missense_Mutation p.R81Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 104473538 104473538 G A TDRD9 Silent p.P683P 0.33 TCGA-AZ-4315-01 14 104506668 104506668 C T TDRD9 Silent p.V1284V 0.23 TCGA-AZ-4315-01 14 104561923 104561923 C T ASPG Missense_Mutation p.A120V 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 105222103 105222103 G T SIVA1 Missense_Mutation p.Q85H 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 105351711 105351711 T C CEP170B Silent p.F592F 0.33 TCGA-AZ-4315-01 14 105926764 105926764 C T MTA1 Silent p.S241S 0.36 TCGA-AZ-4315-01 14 106054496 106054496 G A IGHA2 Silent p.D79D 0.33 TCGA-AZ-4315-01 14 106110007 106110007 T C IGHG2 Missense_Mutation p.N204S 0.35 tolerated(0.29) benign(0.026) TCGA-AZ-4315-01 14 106111009 106111009 G A IGHG2 Missense_Mutation p.S40L 0.31 deleterious(0.02) possibly_damaging(0.627) TCGA-AZ-4315-01 14 106303888 106303888 C T IGHD Missense_Mutation p.D392N 0.33 tolerated_low_confidence(0.96) possibly_damaging(0.564) TCGA-AZ-4315-01 14 106780933 106780933 A G IGHV4-28 Missense_Mutation p.W5R 0.22 deleterious(0.01) benign(0.018) TCGA-AZ-4315-01 14 106815814 106815814 A T IGHV3-33 Missense_Mutation p.F87I 0.40 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-AZ-4315-01 14 106963210 106963210 C T IGHV1-45 Silent p.V24V 0.44 TCGA-AZ-4315-01 14 107035150 107035150 C T IGHV5-51 Missense_Mutation p.A5T 0.25 tolerated(0.5) benign(0.001) TCGA-AZ-4315-01 14 107048773 107048773 T C IGHV3-53 Missense_Mutation p.K83E 0.20 deleterious_low_confidence(0) benign(0.404) TCGA-AZ-4315-01 14 107083381 107083381 T G IGHV4-59 Missense_Mutation p.S75R 0.29 tolerated_low_confidence(0.05) benign(0.15) TCGA-AZ-4315-01 14 107198998 107198998 C A IGHV3-72 Missense_Mutation p.K97N 0.30 deleterious_low_confidence(0.04) benign(0.051) TCGA-AZ-4315-01 14 19377854 19377854 G A OR11H12 Nonsense_Mutation p.W87* 0.28 TCGA-AZ-4315-01 14 20010624 20010624 T G POTEM Intron 0.20 TCGA-AZ-4315-01 14 20215861 20215861 G A OR4Q3 Missense_Mutation p.S92N 0.22 deleterious(0.02) benign(0.008) TCGA-AZ-4315-01 14 20248560 20248560 C A OR4M1 Missense_Mutation p.L27I 0.22 deleterious(0.01) benign(0.134) TCGA-AZ-4315-01 14 20295735 20295735 T A OR4N2 Missense_Mutation p.F43Y 0.12 deleterious(0.03) benign(0.238) TCGA-AZ-4315-01 14 20388855 20388855 C A OR4K5 Missense_Mutation p.F30L 0.16 tolerated(0.16) benign(0.008) TCGA-AZ-4315-01 14 20389018 20389018 T G OR4K5 Missense_Mutation p.F85V 0.07 deleterious(0.01) benign(0.317) TCGA-AZ-4315-01 14 20389071 20389071 C A OR4K5 Missense_Mutation p.F102L 0.24 tolerated(0.06) benign(0.41) TCGA-AZ-4315-01 14 20404301 20404301 A G OR4K1 Missense_Mutation p.H159R 0.20 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 20482439 20482439 C T OR4K14 Missense_Mutation p.R305Q 0.33 tolerated(0.78) benign(0.002) TCGA-AZ-4315-01 14 20483325 20483325 A G OR4K14 Missense_Mutation p.S10P 0.18 deleterious(0.01) probably_damaging(0.964) TCGA-AZ-4315-01 14 20864835 20864835 C T TEP1 Missense_Mutation p.R535Q 0.20 tolerated(0.16) possibly_damaging(0.804) TCGA-AZ-4315-01 14 21024571 21024571 G T RNASE9 3'UTR 0.35 TCGA-AZ-4315-01 14 21025147 21025147 C T RNASE9 Missense_Mutation p.E33K 0.34 tolerated(0.78) probably_damaging(0.953) TCGA-AZ-4315-01 14 21109542 21109542 G T OR6S1 Missense_Mutation p.F103L 0.31 tolerated(0.35) possibly_damaging(0.626) TCGA-AZ-4315-01 14 21168194 21168194 T G RNASE4 3'UTR 0.29 TCGA-AZ-4315-01 14 21250406 21250406 G T RNASE6 3'UTR 0.35 TCGA-AZ-4315-01 14 21679313 21679313 A C HNRNPC 3'UTR 0.37 TCGA-AZ-4315-01 14 21792936 21792936 C T RPGRIP1 Missense_Mutation p.A641V 0.32 tolerated(0.07) benign(0.382) TCGA-AZ-4315-01 14 21793078 21793078 G A RPGRIP1 Silent p.S688S 0.31 TCGA-AZ-4315-01 14 21794243 21794243 T C RPGRIP1 Missense_Mutation p.V874A 0.36 deleterious(0) possibly_damaging(0.773) TCGA-AZ-4315-01 14 21836551 21836551 G A SUPT16H Missense_Mutation p.R278C 0.38 deleterious(0) probably_damaging(0.933) TCGA-AZ-4315-01 14 21869062 21869062 G A CHD8 Missense_Mutation p.R1448W 0.36 deleterious(0) possibly_damaging(0.874) TCGA-AZ-4315-01 14 21875083 21875083 T C CHD8 Missense_Mutation p.I947V 0.31 deleterious(0) probably_damaging(0.97) TCGA-AZ-4315-01 14 22038511 22038511 T C OR10G3 Missense_Mutation p.D122G 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 22038677 22038677 G T OR10G3 Missense_Mutation p.L67I 0.26 deleterious(0.01) possibly_damaging(0.476) TCGA-AZ-4315-01 14 23346170 23346170 C T LRP10 Missense_Mutation p.R526C 0.39 deleterious(0) probably_damaging(0.961) TCGA-AZ-4315-01 14 23523755 23523755 C T CDH24 Silent p.T248T 0.38 TCGA-AZ-4315-01 14 23746070 23746070 G A HOMEZ Nonsense_Mutation p.R123* 0.32 TCGA-AZ-4315-01 14 23828723 23828723 G A EFS Missense_Mutation p.P322S 0.46 tolerated(0.2) probably_damaging(0.999) TCGA-AZ-4315-01 14 23847620 23847620 G A CMTM5 Silent p.A63A 0.38 TCGA-AZ-4315-01 14 23853923 23853923 C T MYH6 Missense_Mutation p.A1765T 0.34 deleterious(0.05) possibly_damaging(0.798) TCGA-AZ-4315-01 14 23863460 23863460 G T MYH6 Silent p.L834L 0.24 TCGA-AZ-4315-01 14 23866208 23866208 A G MYH6 Missense_Mutation p.F711S 0.32 deleterious(0.01) possibly_damaging(0.888) TCGA-AZ-4315-01 14 23893216 23893216 C T MYH7 Missense_Mutation p.R941H 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 23895253 23895253 G A MYH7 Silent p.R694R 0.30 TCGA-AZ-4315-01 14 23902831 23902831 G T MYH7 Silent p.V37V 0.32 TCGA-AZ-4315-01 14 23946460 23946460 G T NGDN Missense_Mutation p.E255D 0.24 tolerated(0.35) benign(0.035) TCGA-AZ-4315-01 14 24464284 24464284 C T DHRS4L2 Missense_Mutation p.A117V 0.20 deleterious(0.02) possibly_damaging(0.707) TCGA-AZ-4315-01 14 24642177 24642177 C A REC8 Missense_Mutation p.F65L 0.23 deleterious(0) benign(0.115) TCGA-AZ-4315-01 14 24677438 24677438 T G TSSK4 3'UTR 0.33 TCGA-AZ-4315-01 14 24678945 24678945 G T CHMP4A 3'UTR 0.34 TCGA-AZ-4315-01 14 24737384 24737384 T G RABGGTA Missense_Mutation p.K360T 0.26 tolerated(0.13) benign(0.348) TCGA-AZ-4315-01 14 24786708 24786708 A C LTB4R 3'UTR 0.28 TCGA-AZ-4315-01 14 24787653 24787653 C T ADCY4 Missense_Mutation p.R1068Q 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-4315-01 14 24801783 24801783 A G ADCY4 Missense_Mutation p.V155A 0.22 tolerated(0.16) benign(0.001) TCGA-AZ-4315-01 14 24838879 24838879 C T NFATC4 Missense_Mutation p.S155L 0.23 tolerated(0.62) benign(0.002) TCGA-AZ-4315-01 14 24846883 24846883 C T NFATC4 3'UTR 0.31 TCGA-AZ-4315-01 14 24977414 24977414 G A CMA1 Missense_Mutation p.L10F 0.42 tolerated(0.13) unknown(0) TCGA-AZ-4315-01 14 30066846 30066846 C T PRKD1 Missense_Mutation p.R762H 0.34 deleterious(0) probably_damaging(0.965) TCGA-AZ-4315-01 14 31061590 31061590 G A G2E3 Missense_Mutation p.R100Q 0.33 tolerated(0.19) probably_damaging(0.996) TCGA-AZ-4315-01 14 31074845 31074845 G A G2E3 Missense_Mutation p.R382Q 0.32 tolerated(0.86) benign(0.003) TCGA-AZ-4315-01 14 31359021 31359021 G T COCH 3'UTR 0.36 TCGA-AZ-4315-01 14 31582648 31582648 C T HECTD1 Missense_Mutation p.A1967T 0.32 tolerated_low_confidence(0.28) benign(0) TCGA-AZ-4315-01 14 31598183 31598183 C T HECTD1 Missense_Mutation p.G1465D 0.34 tolerated(0.14) benign(0) TCGA-AZ-4315-01 14 31642560 31642560 T C HECTD1 Missense_Mutation p.T320A 0.28 tolerated(0.43) benign(0.133) TCGA-AZ-4315-01 14 31819824 31819824 G T HEATR5A Missense_Mutation p.F544L 0.24 tolerated(0.18) benign(0.002) TCGA-AZ-4315-01 14 31844069 31844069 G A HEATR5A Missense_Mutation p.S312L 0.30 deleterious(0.04) benign(0.013) TCGA-AZ-4315-01 14 33292651 33292651 A G AKAP6 Missense_Mutation p.N1878D 0.38 tolerated(0.26) probably_damaging(0.993) TCGA-AZ-4315-01 14 33293529 33293529 T C AKAP6 Silent p.C2170C 0.27 TCGA-AZ-4315-01 14 34269154 34269154 C T NPAS3 Silent p.F547F 0.29 TCGA-AZ-4315-01 14 35182706 35182706 T G CFL2 Missense_Mutation p.K22T 0.36 deleterious(0) possibly_damaging(0.758) TCGA-AZ-4315-01 14 35224069 35224069 G A BAZ1A Missense_Mutation p.R1480C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 36005214 36005214 G A INSM2 3'UTR 0.26 TCGA-AZ-4315-01 14 36039875 36039875 C A RALGAPA1 Missense_Mutation p.A1976S 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-AZ-4315-01 14 36096542 36096542 C A RALGAPA1 Missense_Mutation p.R1698I 0.30 tolerated(0.08) probably_damaging(0.998) TCGA-AZ-4315-01 14 36096942 36096942 T C RALGAPA1 Missense_Mutation p.T1565A 0.33 tolerated(0.05) benign(0.276) TCGA-AZ-4315-01 14 36339854 36339854 G T BRMS1L 3'UTR 0.32 TCGA-AZ-4315-01 14 36986947 36986947 G A NKX2-1 Missense_Mutation p.R248C 0.33 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 14 37050423 37050423 T A NKX2-8 Missense_Mutation p.H135L 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 38679134 38679134 C T SSTR1 Silent p.G180G 0.23 TCGA-AZ-4315-01 14 38680802 38680802 G A SSTR1 3'UTR 0.25 TCGA-AZ-4315-01 14 38723703 38723703 T C CLEC14A 3'UTR 0.52 TCGA-AZ-4315-01 14 39545172 39545172 T G SEC23A Missense_Mutation p.K318N 0.34 tolerated(0.06) possibly_damaging(0.549) TCGA-AZ-4315-01 14 45414458 45414458 C T KLHL28 Missense_Mutation p.R225Q 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 45433122 45433122 A G FAM179B Missense_Mutation p.T500A 0.10 tolerated(0.11) possibly_damaging(0.646) TCGA-AZ-4315-01 14 45624619 45624619 G T FANCM Missense_Mutation p.K451N 0.27 deleterious(0) benign(0.097) TCGA-AZ-4315-01 14 45646059 45646059 G T FANCM Missense_Mutation p.V1368L 0.30 tolerated(0.1) benign(0.001) TCGA-AZ-4315-01 14 45700363 45700363 A C MIS18BP1 Missense_Mutation p.D525E 0.31 tolerated(0.14) benign(0.129) TCGA-AZ-4315-01 14 47530477 47530477 G A MDGA2 Silent p.I500I 0.42 TCGA-AZ-4315-01 14 47687317 47687317 T G MDGA2 Missense_Mutation p.N168H 0.29 tolerated(0.07) possibly_damaging(0.584) TCGA-AZ-4315-01 14 50298974 50298974 C A NEMF Nonsense_Mutation p.E253* 0.29 TCGA-AZ-4315-01 14 50472514 50472514 T C C14orf182 Missense_Mutation p.T2A 0.32 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-AZ-4315-01 14 50579421 50579421 A C VCPKMT Missense_Mutation p.F196C 0.32 deleterious(0) possibly_damaging(0.532) TCGA-AZ-4315-01 14 50886592 50886592 G T MAP4K5 3'UTR 0.39 TCGA-AZ-4315-01 14 50901271 50901271 G A MAP4K5 Missense_Mutation p.P669S 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 14 51054690 51054690 C T ATL1 Missense_Mutation p.S59L 0.34 deleterious(0.03) benign(0.019) TCGA-AZ-4315-01 14 51094801 51094801 A G ATL1 Missense_Mutation p.H391R 0.28 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 14 51099045 51099045 G T ATL1 Missense_Mutation p.K555N 0.33 tolerated_low_confidence(0.34) unknown(0) TCGA-AZ-4315-01 14 51101911 51101911 T G SAV1 Missense_Mutation p.K381T 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.541) TCGA-AZ-4315-01 14 51131976 51131976 T C SAV1 Silent p.A152A 0.27 TCGA-AZ-4315-01 14 51219250 51219250 G A NIN Missense_Mutation p.R1646C 0.30 deleterious(0.03) possibly_damaging(0.599) TCGA-AZ-4315-01 14 51226988 51226988 C T NIN Silent p.T662T 0.31 TCGA-AZ-4315-01 14 51237589 51237589 G A NIN Missense_Mutation p.R414W 0.42 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 14 51467494 51467494 G A TRIM9 Silent p.S457S 0.20 TCGA-AZ-4315-01 14 51561385 51561385 C T TRIM9 Silent p.P91P 0.41 TCGA-AZ-4315-01 14 51710664 51710664 G A TMX1 Silent p.A81A 0.33 TCGA-AZ-4315-01 14 52194798 52194798 C T FRMD6 3'UTR 0.20 TCGA-AZ-4315-01 14 52494029 52494029 C T NID2 Missense_Mutation p.G855D 0.35 deleterious(0.03) benign(0.242) TCGA-AZ-4315-01 14 52899163 52899163 T C TXNDC16 Silent p.E779E 0.35 TCGA-AZ-4315-01 14 53113142 53113142 A G ERO1L Missense_Mutation p.I388T 0.36 deleterious(0) probably_damaging(0.947) TCGA-AZ-4315-01 14 53150503 53150503 T C ERO1L Intron 0.28 TCGA-AZ-4315-01 14 53187673 53187673 G A PSMC6 Missense_Mutation p.R305H 0.36 deleterious(0.02) benign(0.09) TCGA-AZ-4315-01 14 53326377 53326377 G A FERMT2 Missense_Mutation p.R602W 0.32 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 14 54417210 54417210 C T BMP4 Missense_Mutation p.R256Q 0.26 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 14 54417562 54417562 G A BMP4 Missense_Mutation p.R139C 0.23 deleterious(0) probably_damaging(0.977) TCGA-AZ-4315-01 14 54997723 54997723 G A CGRRF1 Silent p.A175A 0.32 TCGA-AZ-4315-01 14 55005243 55005243 G T CGRRF1 3'UTR 0.38 TCGA-AZ-4315-01 14 55169048 55169048 G A SAMD4A Silent p.S155S 0.33 TCGA-AZ-4315-01 14 55429796 55429796 C T WDHD1 Missense_Mutation p.R802H 0.32 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 14 55474054 55474054 C T WDHD1 Missense_Mutation p.D182N 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 55512495 55512495 C T SOCS4 3'UTR 0.36 TCGA-AZ-4315-01 14 55512975 55512975 T C SOCS4 3'UTR 0.29 TCGA-AZ-4315-01 14 55514293 55514293 G A SOCS4 3'UTR 0.13 TCGA-AZ-4315-01 14 55514925 55514925 A G SOCS4 3'UTR 0.41 TCGA-AZ-4315-01 14 55625356 55625356 C A DLGAP5 Missense_Mutation p.R586I 0.32 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 14 55818442 55818442 G A FBXO34 Missense_Mutation p.R445Q 0.29 tolerated(1) benign(0) TCGA-AZ-4315-01 14 56079122 56079122 A C KTN1 Missense_Mutation p.K119T 0.11 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 56150834 56150834 A G KTN1 3'UTR 0.28 TCGA-AZ-4315-01 14 57082687 57082687 G A TMEM260 Missense_Mutation p.E295K 0.25 tolerated(0.11) benign(0.096) TCGA-AZ-4315-01 14 57735931 57735931 C T AP5M1 5'UTR 0.24 TCGA-AZ-4315-01 14 57938032 57938032 G A C14orf105 3'UTR 0.39 TCGA-AZ-4315-01 14 57960422 57960422 A G C14orf105 Silent p.S4S 0.33 TCGA-AZ-4315-01 14 58606065 58606065 C T C14orf37 Silent p.P4P 0.40 TCGA-AZ-4315-01 14 58698938 58698938 G A ACTR10 Missense_Mutation p.R342Q 0.39 tolerated(0.07) benign(0.042) TCGA-AZ-4315-01 14 58831876 58831876 T G ARID4A Missense_Mutation p.S1023R 0.33 tolerated(0.07) probably_damaging(0.997) TCGA-AZ-4315-01 14 58838614 58838614 G A ARID4A Silent p.A1227A 0.28 TCGA-AZ-4315-01 14 58941497 58941497 A G KIAA0586 Missense_Mutation p.E989G 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 59112079 59112079 C A DACT1 Silent p.V246V 0.29 TCGA-AZ-4315-01 14 59826194 59826194 C T DAAM1 Nonsense_Mutation p.R879* 0.35 TCGA-AZ-4315-01 14 59835675 59835675 T G DAAM1 3'UTR 0.32 TCGA-AZ-4315-01 14 60611705 60611705 G T DHRS7 Silent p.I333I 0.22 TCGA-AZ-4315-01 14 61446306 61446306 C T TRMT5 Missense_Mutation p.E104K 0.30 tolerated(0.34) benign(0.004) TCGA-AZ-4315-01 14 62187117 62187117 G A HIF1A Missense_Mutation p.R42Q 0.28 deleterious(0) benign(0.238) TCGA-AZ-4315-01 14 62187153 62187153 G A HIF1A Missense_Mutation p.R54Q 0.32 deleterious(0) benign(0.238) TCGA-AZ-4315-01 14 62207856 62207856 A T HIF1A Missense_Mutation p.E705D 0.38 tolerated(0.6) benign(0.005) TCGA-AZ-4315-01 14 62462770 62462770 G A SYT16 Silent p.Q11Q 0.42 TCGA-AZ-4315-01 14 62536381 62536381 T C SYT16 Missense_Mutation p.I195T 0.32 tolerated(0.06) benign(0.033) TCGA-AZ-4315-01 14 63671342 63671342 A G RHOJ 5'UTR 0.62 TCGA-AZ-4315-01 14 63747757 63747757 C T RHOJ Silent p.V102V 0.31 TCGA-AZ-4315-01 14 64153098 64153098 G A SGPP1 Missense_Mutation p.P351S 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 64421478 64421478 G T SYNE2 Missense_Mutation p.R211I 0.24 probably_damaging(0.998) TCGA-AZ-4315-01 14 64421564 64421564 G T SYNE2 Missense_Mutation p.D240Y 0.31 probably_damaging(0.972) TCGA-AZ-4315-01 14 64447384 64447384 G T SYNE2 Nonsense_Mutation p.E528* 0.33 TCGA-AZ-4315-01 14 64460655 64460655 G A SYNE2 Missense_Mutation p.E917K 0.24 benign(0.015) TCGA-AZ-4315-01 14 64596902 64596902 C A SYNE2 Missense_Mutation p.A4759D 0.35 possibly_damaging(0.678) TCGA-AZ-4315-01 14 64610534 64610534 C T SYNE2 Silent p.F5117F 0.27 TCGA-AZ-4315-01 14 64694219 64694219 T G SYNE2 3'Flank 0.28 TCGA-AZ-4315-01 14 64716389 64716389 C T ESR2 Missense_Mutation p.G367E 0.32 deleterious(0.01) probably_damaging(0.96) TCGA-AZ-4315-01 14 64898313 64898313 G A MTHFD1 Missense_Mutation p.A459T 0.35 tolerated(0.06) possibly_damaging(0.514) TCGA-AZ-4315-01 14 64939161 64939161 T G AKAP5 3'UTR 0.31 TCGA-AZ-4315-01 14 64940638 64940638 T G AKAP5 3'UTR 0.24 TCGA-AZ-4315-01 14 64940661 64940661 A C AKAP5 3'UTR 0.36 TCGA-AZ-4315-01 14 64953810 64953810 C T ZBTB25 Missense_Mutation p.R380Q 0.31 deleterious(0.03) benign(0.024) TCGA-AZ-4315-01 14 64989764 64989764 T G ZBTB1 Missense_Mutation p.N514K 0.29 tolerated(0.93) benign(0.016) TCGA-AZ-4315-01 14 65008078 65008078 C T HSPA2 Silent p.L171L 0.33 TCGA-AZ-4315-01 14 65198173 65198173 G A PLEKHG3 Missense_Mutation p.R259H 0.31 deleterious(0) possibly_damaging(0.702) TCGA-AZ-4315-01 14 65220301 65220301 C A SPTB Missense_Mutation p.G2186C 0.36 tolerated(0.18) benign(0.104) TCGA-AZ-4315-01 14 65406119 65406119 C T GPX2 3'UTR 0.41 TCGA-AZ-4315-01 14 65560503 65560503 C T MAX Missense_Mutation p.E32K 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 66028185 66028185 G T FUT8 5'UTR 0.29 TCGA-AZ-4315-01 14 67589012 67589012 C T GPHN Nonsense_Mutation p.R556* 0.33 TCGA-AZ-4315-01 14 68159304 68159304 C T RDH11 Missense_Mutation p.R67Q 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 14 68249967 68249967 G C ZFYVE26 Missense_Mutation p.T1301S 0.38 deleterious(0.04) probably_damaging(0.994) TCGA-AZ-4315-01 14 69792736 69792736 G A GALNT16 Missense_Mutation p.R187Q 0.30 tolerated(0.5) benign(0.004) TCGA-AZ-4315-01 14 69795241 69795241 G A GALNT16 Missense_Mutation p.E215K 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 69808421 69808421 G T GALNT16 Missense_Mutation p.R404M 0.40 deleterious(0) possibly_damaging(0.812) TCGA-AZ-4315-01 14 69866049 69866049 T C SLC39A9 5'UTR 0.31 TCGA-AZ-4315-01 14 70634343 70634343 C T SLC8A3 Missense_Mutation p.R266H 0.30 deleterious(0) probably_damaging(0.973) TCGA-AZ-4315-01 14 70635135 70635135 G A SLC8A3 Missense_Mutation p.A2V 0.23 tolerated_low_confidence(0.22) benign(0.197) TCGA-AZ-4315-01 14 70795901 70795901 G A COX16 Missense_Mutation p.S65L 0.23 deleterious(0) possibly_damaging(0.686) TCGA-AZ-4315-01 14 70924600 70924600 T C ADAM21 Silent p.C128C 0.35 TCGA-AZ-4315-01 14 70925420 70925420 G T ADAM21 Nonsense_Mutation p.E402* 0.38 TCGA-AZ-4315-01 14 70926145 70926145 G A ADAM21 Silent p.G643G 0.34 TCGA-AZ-4315-01 14 70926371 70926371 C A ADAM21 Missense_Mutation p.H719N 0.33 tolerated_low_confidence(0.27) benign(0.002) TCGA-AZ-4315-01 14 70989278 70989278 C A ADAM20 3'UTR 0.27 TCGA-AZ-4315-01 14 71227794 71227794 G A MAP3K9 Missense_Mutation p.A309V 0.37 deleterious(0) possibly_damaging(0.719) TCGA-AZ-4315-01 14 71445221 71445221 C A PCNX Missense_Mutation p.L723I 0.37 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 14 72054762 72054762 G A SIPA1L1 Missense_Mutation p.R58Q 0.24 tolerated(0.12) probably_damaging(0.96) TCGA-AZ-4315-01 14 74086395 74086395 C A ACOT6 Missense_Mutation p.S159Y 0.27 deleterious(0.02) probably_damaging(0.937) TCGA-AZ-4315-01 14 74346867 74346867 G T PTGR2 Missense_Mutation p.R280I 0.35 deleterious(0) possibly_damaging(0.51) TCGA-AZ-4315-01 14 74454807 74454807 C A ENTPD5 5'UTR 0.30 TCGA-AZ-4315-01 14 74489849 74489849 T C CCDC176 Splice_Site p.X95_splice 0.29 TCGA-AZ-4315-01 14 74726386 74726386 C A VSX2 Missense_Mutation p.L221I 0.44 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 14 74727312 74727312 C T VSX2 Missense_Mutation p.S259L 0.33 deleterious(0) possibly_damaging(0.907) TCGA-AZ-4315-01 14 74727631 74727631 G A VSX2 3'UTR 0.38 TCGA-AZ-4315-01 14 74961787 74961787 C T ISCA2 3'UTR 0.35 TCGA-AZ-4315-01 14 74975968 74975968 G A LTBP2 Missense_Mutation p.P1126S 0.24 tolerated(0.44) probably_damaging(1) TCGA-AZ-4315-01 14 75130634 75130634 C T AREL1 Silent p.P779P 0.33 TCGA-AZ-4315-01 14 75134228 75134228 A C AREL1 Missense_Mutation p.L662V 0.25 tolerated(0.83) benign(0.306) TCGA-AZ-4315-01 14 75248504 75248504 G A YLPM1 Silent p.G586G 0.35 TCGA-AZ-4315-01 14 75514366 75514366 C A MLH3 Nonsense_Mutation p.E665* 0.28 TCGA-AZ-4315-01 14 75515257 75515257 C A MLH3 Missense_Mutation p.D368Y 0.31 deleterious(0) possibly_damaging(0.634) TCGA-AZ-4315-01 14 75614382 75614382 C T TMED10 Silent p.A132A 0.47 TCGA-AZ-4315-01 14 76121263 76121263 G A C14orf1 Missense_Mutation p.R64C 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 14 76241852 76241852 G A TTLL5 Missense_Mutation p.R721Q 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-4315-01 14 76349060 76349060 C A TTLL5 Silent p.S1185S 0.36 TCGA-AZ-4315-01 14 76446953 76446953 T C TGFB3 Missense_Mutation p.N95S 0.40 tolerated(0.85) benign(0.04) TCGA-AZ-4315-01 14 77242319 77242319 C T VASH1 Silent p.I205I 0.25 TCGA-AZ-4315-01 14 77493183 77493183 G A IRF2BPL Missense_Mutation p.S318L 0.31 tolerated(0.48) unknown(0) TCGA-AZ-4315-01 14 77791258 77791258 C T GSTZ1 Nonsense_Mutation p.R21* 0.41 TCGA-AZ-4315-01 14 77843856 77843856 A G SAMD15 Missense_Mutation p.Y32C 0.33 tolerated(0.15) benign(0.428) TCGA-AZ-4315-01 14 77845305 77845305 A G SAMD15 Missense_Mutation p.D515G 0.35 tolerated(0.1) benign(0.149) TCGA-AZ-4315-01 14 77880400 77880400 C A NOXRED1 Nonsense_Mutation p.E76* 0.14 TCGA-AZ-4315-01 14 77978651 77978651 C T SPTLC2 Silent p.T555T 0.24 TCGA-AZ-4315-01 14 78374221 78374221 G A ADCK1 Missense_Mutation p.D273N 0.42 deleterious(0.04) possibly_damaging(0.781) TCGA-AZ-4315-01 14 79117556 79117556 G T NRXN3 5'UTR 0.35 TCGA-AZ-4315-01 14 79175776 79175776 C T NRXN3 Missense_Mutation p.P107S 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-4315-01 14 79454425 79454425 G T NRXN3 Missense_Mutation p.W695L 0.36 deleterious(0.01) benign(0) TCGA-AZ-4315-01 14 81209561 81209561 C A CEP128 Missense_Mutation p.E888D 0.29 deleterious(0.03) possibly_damaging(0.907) TCGA-AZ-4315-01 14 81227790 81227790 C A CEP128 Missense_Mutation p.E848D 0.24 tolerated(0.41) benign(0.004) TCGA-AZ-4315-01 14 81244317 81244317 T G CEP128 Missense_Mutation p.D762A 0.33 deleterious(0) possibly_damaging(0.506) TCGA-AZ-4315-01 14 81574941 81574941 T G TSHR Intron 0.10 TCGA-AZ-4315-01 14 81646649 81646649 T G GTF2A1 Missense_Mutation p.K350T 0.37 deleterious(0) benign(0.31) TCGA-AZ-4315-01 14 81864644 81864644 G A STON2 Missense_Mutation p.S28L 0.33 deleterious_low_confidence(0.02) benign(0.02) TCGA-AZ-4315-01 14 81966005 81966005 G A SEL1L Missense_Mutation p.A260V 0.28 tolerated(0.06) benign(0.351) TCGA-AZ-4315-01 14 86090484 86090484 G A FLRT2 3'UTR 0.27 TCGA-AZ-4315-01 14 86092119 86092119 A C FLRT2 3'UTR 0.33 TCGA-AZ-4315-01 14 86092419 86092419 G A FLRT2 3'UTR 0.33 TCGA-AZ-4315-01 14 86092892 86092892 C A FLRT2 3'UTR 0.29 TCGA-AZ-4315-01 14 86093023 86093023 C T FLRT2 3'UTR 0.25 TCGA-AZ-4315-01 14 86093312 86093312 G T FLRT2 3'UTR 0.25 TCGA-AZ-4315-01 14 86093326 86093326 G T FLRT2 3'UTR 0.28 TCGA-AZ-4315-01 14 86093981 86093981 G A FLRT2 3'UTR 0.26 TCGA-AZ-4315-01 14 88478055 88478055 T C GPR65 Silent p.I288I 0.29 TCGA-AZ-4315-01 14 89130896 89130896 C T EML5 Missense_Mutation p.R1117Q 0.26 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 14 89202845 89202845 T G EML5 Missense_Mutation p.E304D 0.24 tolerated(0.05) benign(0.444) TCGA-AZ-4315-01 14 90650893 90650893 G A KCNK13 Missense_Mutation p.R258H 0.27 deleterious(0.02) benign(0.426) TCGA-AZ-4315-01 14 90782986 90782986 C T NRDE2 Missense_Mutation p.D115N 0.29 tolerated(0.16) benign(0.3) TCGA-AZ-4315-01 14 91757408 91757408 C T CCDC88C Missense_Mutation p.R1378Q 0.28 deleterious(0.02) benign(0.201) TCGA-AZ-4315-01 14 91770134 91770134 C T CCDC88C Silent p.S1182S 0.27 TCGA-AZ-4315-01 14 91925107 91925107 G T SMEK1 Nonsense_Mutation p.S820* 0.27 TCGA-AZ-4315-01 14 91929082 91929082 T C SMEK1 Missense_Mutation p.D644G 0.27 tolerated(0.16) benign(0.088) TCGA-AZ-4315-01 14 92157873 92157873 A C CATSPERB Missense_Mutation p.F286L 0.23 tolerated(0.08) probably_damaging(0.994) TCGA-AZ-4315-01 14 92435866 92435866 A G TRIP11 3'UTR 0.24 TCGA-AZ-4315-01 14 92469971 92469971 C A TRIP11 Missense_Mutation p.R1450I 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 92471035 92471035 A G TRIP11 Silent p.A1095A 0.18 TCGA-AZ-4315-01 14 92471238 92471238 G A TRIP11 Nonsense_Mutation p.R1028* 0.38 TCGA-AZ-4315-01 14 92471873 92471873 A C TRIP11 Missense_Mutation p.F816C 0.31 tolerated(0.17) benign(0.014) TCGA-AZ-4315-01 14 92472348 92472348 G A TRIP11 Missense_Mutation p.L658F 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 92628009 92628009 G A CPSF2 Missense_Mutation p.R757H 0.16 tolerated(0.16) benign(0.097) TCGA-AZ-4315-01 14 92922792 92922792 G A SLC24A4 Silent p.P365P 0.26 TCGA-AZ-4315-01 14 93653176 93653176 G A TMEM251 3'UTR 0.38 TCGA-AZ-4315-01 14 94004429 94004429 G C UNC79 Missense_Mutation p.R229T 0.31 tolerated(0.13) probably_damaging(0.995) TCGA-AZ-4315-01 14 94038301 94038301 G A UNC79 Missense_Mutation p.R429Q 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-AZ-4315-01 14 94066969 94066969 A G UNC79 Missense_Mutation p.T966A 0.42 tolerated(0.06) benign(0.221) TCGA-AZ-4315-01 14 94121597 94121597 G T UNC79 Missense_Mutation p.K1962N 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 14 94160751 94160751 T G UNC79 Missense_Mutation p.F2376C 0.26 deleterious(0) probably_damaging(0.922) TCGA-AZ-4315-01 14 94394670 94394670 C T FAM181A Silent p.F75F 0.45 TCGA-AZ-4315-01 14 94394775 94394775 C A FAM181A Missense_Mutation p.F110L 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 14 94469640 94469640 G T LINC00521 RNA 0.45 TCGA-AZ-4315-01 14 94750407 94750407 C T SERPINA10 Missense_Mutation p.M410I 0.21 deleterious(0.04) benign(0.007) TCGA-AZ-4315-01 14 94756294 94756294 T C SERPINA10 Missense_Mutation p.T213A 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-AZ-4315-01 14 94908958 94908958 G A SERPINA11 Silent p.N418N 0.40 TCGA-AZ-4315-01 14 94914890 94914890 G T SERPINA11 Missense_Mutation p.F74L 0.33 tolerated(0.37) benign(0.003) TCGA-AZ-4315-01 14 94955986 94955986 C T SERPINA12 Missense_Mutation p.A342T 0.29 tolerated(0.76) benign(0.009) TCGA-AZ-4315-01 14 94962936 94962936 C A SERPINA12 Missense_Mutation p.D227Y 0.25 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 14 95057092 95057092 C T SERPINA5 Silent p.L299L 0.42 TCGA-AZ-4315-01 14 95085611 95085611 G A SERPINA3 Silent p.V241V 0.30 TCGA-AZ-4315-01 14 95235435 95235435 G A GSC Missense_Mutation p.R159W 0.16 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 14 95557625 95557625 C T DICER1 Silent p.S1814S 0.34 TCGA-AZ-4315-01 14 95574728 95574728 C T DICER1 Missense_Mutation p.R790Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 14 95590927 95590927 C A DICER1 Nonsense_Mutation p.E328* 0.30 TCGA-AZ-4315-01 14 95660240 95660240 A G CLMN Missense_Mutation p.V929A 0.30 tolerated(0.15) benign(0.015) TCGA-AZ-4315-01 14 95670454 95670454 C T CLMN Missense_Mutation p.R411K 0.25 tolerated(0.17) benign(0.024) TCGA-AZ-4315-01 14 96129715 96129715 G T TCL6 RNA 0.38 TCGA-AZ-4315-01 14 96731074 96731074 G A BDKRB1 Missense_Mutation p.R352Q 0.33 tolerated_low_confidence(0.34) benign(0.003) TCGA-AZ-4315-01 14 96770877 96770877 T C ATG2B Silent p.G1599G 0.31 TCGA-AZ-4315-01 14 96954872 96954872 A G AK7 3'UTR 0.29 TCGA-AZ-4315-01 14 97031357 97031357 G T PAPOLA Missense_Mutation p.K736N 0.32 deleterious(0) possibly_damaging(0.617) TCGA-AZ-4315-01 14 99182604 99182604 C T C14orf177 Missense_Mutation p.P26S 0.25 tolerated_low_confidence(0.31) benign(0.012) TCGA-AZ-4315-01 14 99640466 99640466 C T BCL11B 3'UTR 0.37 TCGA-AZ-4315-01 15 100591855 100591855 C T ADAMTS17 Missense_Mutation p.E793K 0.28 deleterious(0.03) possibly_damaging(0.689) TCGA-AZ-4315-01 15 101110253 101110253 G A LINS Silent p.G488G 0.33 TCGA-AZ-4315-01 15 101608987 101608987 C T LRRK1 Silent p.F1994F 0.33 TCGA-AZ-4315-01 15 20193217 20193217 G A IGHV3OR15-7 Silent p.V17V 0.21 TCGA-AZ-4315-01 15 20489441 20489441 A G CHEK2P2 RNA 0.15 TCGA-AZ-4315-01 15 20588539 20588539 C T HERC2P3 RNA 0.29 TCGA-AZ-4315-01 15 20739911 20739911 C A GOLGA6L6 Missense_Mutation p.K613N 0.18 unknown(0) TCGA-AZ-4315-01 15 22332677 22332677 G A RP11-69H14.6 RNA 0.11 TCGA-AZ-4315-01 15 22369068 22369068 C T OR4M2 Nonsense_Mutation p.R165* 0.31 TCGA-AZ-4315-01 15 22382965 22382965 C T OR4N4 Missense_Mutation p.R165C 0.34 tolerated(0.07) benign(0.032) TCGA-AZ-4315-01 15 22841055 22841055 C T TUBGCP5 Silent p.F141F 0.24 TCGA-AZ-4315-01 15 22955235 22955235 C T CYFIP1 Silent p.F543F 0.36 TCGA-AZ-4315-01 15 22998454 22998454 G T CYFIP1 Missense_Mutation p.R1049I 0.30 deleterious(0.02) possibly_damaging(0.61) TCGA-AZ-4315-01 15 23201547 23201547 G A WHAMMP3 RNA 0.38 TCGA-AZ-4315-01 15 24922361 24922361 A C NPAP1 Missense_Mutation p.K449N 0.41 tolerated(0.6) benign(0.013) TCGA-AZ-4315-01 15 24927296 24927296 G T NPAP1 3'UTR 0.33 TCGA-AZ-4315-01 15 25213166 25213166 G A SNURF Silent p.E66E 0.27 TCGA-AZ-4315-01 15 25585332 25585332 T G UBE3A Silent p.R803R 0.28 TCGA-AZ-4315-01 15 25616215 25616215 G A UBE3A Missense_Mutation p.S372L 0.28 deleterious(0.01) benign(0.002) TCGA-AZ-4315-01 15 25620762 25620762 C T UBE3A Missense_Mutation p.E74K 0.32 tolerated(0.22) benign(0.011) TCGA-AZ-4315-01 15 25959016 25959016 G A ATP10A Missense_Mutation p.R717W 0.29 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 15 25981282 25981282 C T ATP10A Missense_Mutation p.E221K 0.15 tolerated(0.05) benign(0.427) TCGA-AZ-4315-01 15 26108004 26108004 G A ATP10A Silent p.F80F 0.30 TCGA-AZ-4315-01 15 26825509 26825509 G A GABRB3 Silent p.I213I 0.49 TCGA-AZ-4315-01 15 27126099 27126099 C T GABRA5 Missense_Mutation p.R65W 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 27128356 27128356 C T GABRA5 Silent p.F84F 0.34 TCGA-AZ-4315-01 15 27128536 27128536 G A GABRA5 Missense_Mutation p.R110Q 0.37 tolerated(0.09) benign(0.007) TCGA-AZ-4315-01 15 27193302 27193302 C T GABRA5 Silent p.F437F 0.27 TCGA-AZ-4315-01 15 27572028 27572028 A T GABRG3 Missense_Mutation p.I115F 0.37 deleterious(0.03) benign(0.361) TCGA-AZ-4315-01 15 28117044 28117044 C A OCA2 Nonsense_Mutation p.E702* 0.19 TCGA-AZ-4315-01 15 28200302 28200302 A C OCA2 Splice_Site p.X614_splice 0.33 TCGA-AZ-4315-01 15 28366552 28366552 T C HERC2 Silent p.V4404V 0.29 TCGA-AZ-4315-01 15 29346354 29346354 C T APBA2 Silent p.G89G 0.42 TCGA-AZ-4315-01 15 29346819 29346819 C T APBA2 Silent p.S244S 0.28 TCGA-AZ-4315-01 15 30776797 30776797 C T CTD-3092A11.2 5'Flank 0.36 TCGA-AZ-4315-01 15 31197927 31197927 G A FAN1 Missense_Mutation p.S354N 0.31 tolerated(0.51) benign(0.004) TCGA-AZ-4315-01 15 31210396 31210396 A G FAN1 Missense_Mutation p.D614G 0.35 deleterious(0.04) benign(0.142) TCGA-AZ-4315-01 15 31234956 31234956 A C FAN1 3'UTR 0.56 TCGA-AZ-4315-01 15 31341661 31341661 C T TRPM1 Missense_Mutation p.D514N 0.27 deleterious(0.04) possibly_damaging(0.847) TCGA-AZ-4315-01 15 31358425 31358425 G A TRPM1 Missense_Mutation p.S232F 0.34 deleterious(0.05) possibly_damaging(0.775) TCGA-AZ-4315-01 15 31793950 31793950 G T OTUD7A Missense_Mutation p.Q365K 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-AZ-4315-01 15 32930002 32930002 G A ARHGAP11A Missense_Mutation p.G1010R 0.29 deleterious(0.01) possibly_damaging(0.88) TCGA-AZ-4315-01 15 33026845 33026845 A C GREM1 3'UTR 0.38 TCGA-AZ-4315-01 15 33358810 33358810 C T FMN1 Missense_Mutation p.A426T 0.41 deleterious(0) unknown(0) TCGA-AZ-4315-01 15 33359400 33359400 C T FMN1 Missense_Mutation p.R229H 0.38 tolerated_low_confidence(0.15) unknown(0) TCGA-AZ-4315-01 15 33765705 33765705 G A RYR3 Missense_Mutation p.R46H 0.26 probably_damaging(0.982) TCGA-AZ-4315-01 15 33895388 33895388 G A RYR3 Missense_Mutation p.E663K 0.32 probably_damaging(0.999) TCGA-AZ-4315-01 15 33895400 33895400 G A RYR3 Missense_Mutation p.D667N 0.35 probably_damaging(1) TCGA-AZ-4315-01 15 33938652 33938652 G A RYR3 Missense_Mutation p.R1289H 0.45 probably_damaging(0.939) TCGA-AZ-4315-01 15 33954810 33954810 G A RYR3 Silent p.T1693T 0.38 TCGA-AZ-4315-01 15 33991959 33991959 C T RYR3 Nonsense_Mutation p.R2102* 0.28 TCGA-AZ-4315-01 15 34064243 34064243 G A RYR3 Missense_Mutation p.R2980Q 0.32 benign(0.275) TCGA-AZ-4315-01 15 34094094 34094094 T G RYR3 Missense_Mutation p.F3315V 0.34 possibly_damaging(0.49) TCGA-AZ-4315-01 15 34129121 34129121 C T RYR3 Silent p.I3861I 0.39 TCGA-AZ-4315-01 15 34130065 34130065 C A RYR3 Missense_Mutation p.L3962I 0.30 probably_damaging(0.998) TCGA-AZ-4315-01 15 34356255 34356255 C G CHRM5 Missense_Mutation p.A446G 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 15 34388111 34388111 G A EMC7 Missense_Mutation p.S114L 0.23 deleterious(0.01) possibly_damaging(0.838) TCGA-AZ-4315-01 15 34395604 34395604 C T PGBD4 Missense_Mutation p.A291V 0.38 tolerated(1) benign(0.008) TCGA-AZ-4315-01 15 34537591 34537591 C T SLC12A6 Missense_Mutation p.S613N 0.26 deleterious(0.05) benign(0.282) TCGA-AZ-4315-01 15 35148857 35148857 G A AQR 3'UTR 0.18 TCGA-AZ-4315-01 15 35529560 35529560 C T ANP32AP1 RNA 0.39 TCGA-AZ-4315-01 15 37184630 37184630 G T MEIS2 Missense_Mutation p.S393Y 0.36 tolerated_low_confidence(0.06) benign(0.001) TCGA-AZ-4315-01 15 37388532 37388532 G T MEIS2 Silent p.S115S 0.30 TCGA-AZ-4315-01 15 37391516 37391516 T C MEIS2 Intron 0.27 TCGA-AZ-4315-01 15 37391851 37391851 T G MEIS2 5'UTR 0.30 TCGA-AZ-4315-01 15 38243330 38243330 C T TMCO5A Silent p.L254L 0.20 TCGA-AZ-4315-01 15 38643705 38643705 C T SPRED1 Missense_Mutation p.S392L 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 38803904 38803904 C A RASGRP1 Missense_Mutation p.Q289H 0.22 tolerated(0.2) benign(0.346) TCGA-AZ-4315-01 15 38852026 38852026 A C RASGRP1 Silent p.S72S 0.37 TCGA-AZ-4315-01 15 39546234 39546234 C T C15orf54 3'UTR 0.30 TCGA-AZ-4315-01 15 39546860 39546860 T A C15orf54 3'UTR 0.46 TCGA-AZ-4315-01 15 39910064 39910064 G A FSIP1 Missense_Mutation p.S524L 0.38 tolerated(0.07) benign(0.062) TCGA-AZ-4315-01 15 40099429 40099429 C T GPR176 Missense_Mutation p.R68H 0.42 tolerated(0.19) benign(0.032) TCGA-AZ-4315-01 15 40462825 40462825 A G BUB1B Silent p.L109L 0.33 TCGA-AZ-4315-01 15 40488933 40488933 C T BUB1B Missense_Mutation p.R416W 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 40512919 40512919 G A BUB1B Missense_Mutation p.V1038I 0.34 tolerated(0.2) benign(0.025) TCGA-AZ-4315-01 15 40588558 40588558 C T PLCB2 Silent p.E545E 0.36 TCGA-AZ-4315-01 15 40589036 40589036 T G PLCB2 Missense_Mutation p.Q466P 0.38 tolerated(0.08) benign(0.008) TCGA-AZ-4315-01 15 40865789 40865789 G T RPUSD2 Nonsense_Mutation p.E323* 0.29 TCGA-AZ-4315-01 15 40913956 40913956 T G CASC5 Missense_Mutation p.I524M 0.32 deleterious(0.03) possibly_damaging(0.466) TCGA-AZ-4315-01 15 41146709 41146709 C T SPINT1 Missense_Mutation p.A368V 0.38 tolerated(0.43) benign(0.063) TCGA-AZ-4315-01 15 41352121 41352121 G A INO80 Silent p.L596L 0.40 TCGA-AZ-4315-01 15 41377713 41377713 G A INO80 Missense_Mutation p.R243C 0.30 tolerated(0.05) benign(0.001) TCGA-AZ-4315-01 15 41476052 41476052 A C EXD1 3'UTR 0.34 TCGA-AZ-4315-01 15 42021428 42021428 C T MGA Nonsense_Mutation p.R1242* 0.31 TCGA-AZ-4315-01 15 42042026 42042026 G A MGA Missense_Mutation p.R2074H 0.09 tolerated_low_confidence(0.65) benign(0) TCGA-AZ-4315-01 15 42110446 42110446 C A MAPKBP1 Missense_Mutation p.L685I 0.19 tolerated(0.98) benign(0.124) TCGA-AZ-4315-01 15 42439465 42439465 C T PLA2G4F Missense_Mutation p.V426I 0.30 tolerated(0.05) possibly_damaging(0.746) TCGA-AZ-4315-01 15 42551086 42551086 G A TMEM87A Intron 0.37 TCGA-AZ-4315-01 15 42618582 42618582 G A GANC Silent p.K460K 0.25 TCGA-AZ-4315-01 15 42720269 42720269 G A ZNF106 Nonsense_Mutation p.R1626* 0.31 TCGA-AZ-4315-01 15 42731492 42731492 C A ZNF106 Missense_Mutation p.R1405M 0.28 deleterious(0.03) possibly_damaging(0.838) TCGA-AZ-4315-01 15 43021536 43021536 G A CDAN1 Missense_Mutation p.S811L 0.38 deleterious(0.04) benign(0.003) TCGA-AZ-4315-01 15 43067884 43067884 C T TTBK2 Missense_Mutation p.E483K 0.15 tolerated(0.1) benign(0.01) TCGA-AZ-4315-01 15 43170761 43170761 C A TTBK2 Nonsense_Mutation p.E19* 0.36 TCGA-AZ-4315-01 15 43374888 43374888 A G UBR1 Missense_Mutation p.V122A 0.28 deleterious(0) possibly_damaging(0.734) TCGA-AZ-4315-01 15 43484990 43484990 G A CCNDBP1 Missense_Mutation p.V304M 0.36 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 15 43653755 43653755 C T ZSCAN29 Missense_Mutation p.R692Q 0.27 tolerated(0.15) probably_damaging(0.99) TCGA-AZ-4315-01 15 43653951 43653951 T G ZSCAN29 Missense_Mutation p.K627Q 0.30 tolerated(0.07) benign(0.02) TCGA-AZ-4315-01 15 43697535 43697535 T G TUBGCP4 3'UTR 0.16 TCGA-AZ-4315-01 15 43784496 43784496 C A TP53BP1 Nonsense_Mutation p.E60* 0.35 TCGA-AZ-4315-01 15 43892757 43892757 G T STRC Silent p.I1656I 0.26 TCGA-AZ-4315-01 15 43900289 43900289 G A STRC Nonsense_Mutation p.R1224* 0.63 TCGA-AZ-4315-01 15 43939615 43939615 G A CATSPER2 Missense_Mutation p.R66C 0.35 deleterious(0.02) benign(0.009) TCGA-AZ-4315-01 15 44028388 44028388 G A RNU6-354P 5'Flank 0.27 TCGA-AZ-4315-01 15 44028525 44028525 G A RNU6-354P 5'Flank 0.37 TCGA-AZ-4315-01 15 44028945 44028945 C A RNU6-354P 5'Flank 0.32 TCGA-AZ-4315-01 15 44065392 44065392 G A ELL3 Silent p.R372R 0.28 TCGA-AZ-4315-01 15 44105192 44105192 G A MFAP1 Nonsense_Mutation p.R294* 0.36 TCGA-AZ-4315-01 15 44184221 44184221 A C FRMD5 Missense_Mutation p.F229C 0.43 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 15 44705879 44705879 T G CASC4 3'UTR 0.36 TCGA-AZ-4315-01 15 44856872 44856872 C T SPG11 Missense_Mutation p.D2342N 0.24 deleterious(0.05) probably_damaging(0.913) TCGA-AZ-4315-01 15 44914540 44914540 T G SPG11 Missense_Mutation p.E774D 0.40 tolerated(0.13) possibly_damaging(0.714) TCGA-AZ-4315-01 15 44964622 44964622 C T PATL2 Missense_Mutation p.R160Q 0.32 deleterious(0.04) possibly_damaging(0.782) TCGA-AZ-4315-01 15 45559714 45559714 C T SLC28A2 Missense_Mutation p.A335V 0.37 tolerated(0.22) benign(0.221) TCGA-AZ-4315-01 15 45702647 45702647 C T SPATA5L1 Silent p.S451S 0.39 TCGA-AZ-4315-01 15 45847855 45847855 C T RP11-96O20.2 5'Flank 0.34 TCGA-AZ-4315-01 15 45848307 45848307 T C RP11-96O20.2 5'Flank 0.38 TCGA-AZ-4315-01 15 45898823 45898823 C T BLOC1S6 3'UTR 0.53 TCGA-AZ-4315-01 15 48063438 48063438 C A SEMA6D Missense_Mutation p.P893H 0.39 tolerated(0.13) possibly_damaging(0.619) TCGA-AZ-4315-01 15 48500134 48500134 T C SLC12A1 Missense_Mutation p.F73S 0.37 tolerated(0.45) possibly_damaging(0.71) TCGA-AZ-4315-01 15 48539637 48539637 C T SLC12A1 Missense_Mutation p.A555V 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 15 48591371 48591371 C T SLC12A1 Missense_Mutation p.R999C 0.32 deleterious(0.02) benign(0.002) TCGA-AZ-4315-01 15 48593528 48593528 G A SLC12A1 Missense_Mutation p.R1038Q 0.28 deleterious(0) benign(0.382) TCGA-AZ-4315-01 15 49033768 49033768 A C CEP152 Intron 0.36 TCGA-AZ-4315-01 15 49061254 49061254 G T CEP152 Missense_Mutation p.P603T 0.30 tolerated(0.34) benign(0.156) TCGA-AZ-4315-01 15 49118080 49118080 T G SHC4 3'UTR 0.35 TCGA-AZ-4315-01 15 49170414 49170414 G A EID1 Missense_Mutation p.S14N 0.23 tolerated(0.06) unknown(0) TCGA-AZ-4315-01 15 49171085 49171085 G A EID1 3'UTR 0.32 TCGA-AZ-4315-01 15 49620530 49620530 C T GALK2 3'UTR 0.46 TCGA-AZ-4315-01 15 49620724 49620724 T G GALK2 3'Flank 0.32 TCGA-AZ-4315-01 15 49663591 49663591 C T FAM227B Missense_Mutation p.D340N 0.35 tolerated(0.16) benign(0.147) TCGA-AZ-4315-01 15 49716663 49716663 G T FGF7 Missense_Mutation p.D57Y 0.32 deleterious(0.01) probably_damaging(0.956) TCGA-AZ-4315-01 15 50763915 50763915 C T USP8 Missense_Mutation p.L258F 0.14 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 15 50769174 50769174 A C USP8 Missense_Mutation p.E326D 0.24 tolerated(0.25) probably_damaging(0.952) TCGA-AZ-4315-01 15 50785002 50785002 G A USP8 Missense_Mutation p.R780H 0.11 deleterious(0.02) benign(0.173) TCGA-AZ-4315-01 15 50836904 50836904 A C USP50 Missense_Mutation p.V43G 0.33 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 15 50838859 50838859 G A USP50 5'UTR 0.25 TCGA-AZ-4315-01 15 50923657 50923657 T C TRPM7 Silent p.E387E 0.39 TCGA-AZ-4315-01 15 51291379 51291379 T C AP4E1 Silent p.G1005G 0.31 TCGA-AZ-4315-01 15 51696738 51696738 C A GLDN Silent p.I481I 0.24 TCGA-AZ-4315-01 15 51975596 51975596 A C SCG3 Missense_Mutation p.D121A 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-4315-01 15 52098714 52098714 C T TMOD2 Silent p.D339D 0.26 TCGA-AZ-4315-01 15 52194168 52194168 A T TMOD3 Missense_Mutation p.Y320F 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 15 52245340 52245340 C T LEO1 Silent p.T487T 0.27 TCGA-AZ-4315-01 15 52252142 52252142 C T LEO1 Missense_Mutation p.D372N 0.41 deleterious(0.03) benign(0.271) TCGA-AZ-4315-01 15 52643488 52643488 G T MYO5A Missense_Mutation p.S1271Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 15 52697558 52697558 G A MYO5A Nonsense_Mutation p.R327* 0.43 TCGA-AZ-4315-01 15 53908267 53908267 G A WDR72 Silent p.V712V 0.32 TCGA-AZ-4315-01 15 53957929 53957929 C T WDR72 Missense_Mutation p.R601Q 0.36 tolerated(0.21) benign(0.008) TCGA-AZ-4315-01 15 54306759 54306759 T G UNC13C Missense_Mutation p.F553L 0.41 tolerated_low_confidence(0.05) benign(0.254) TCGA-AZ-4315-01 15 54307508 54307508 G T UNC13C Missense_Mutation p.R803M 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AZ-4315-01 15 54825240 54825240 C A UNC13C Missense_Mutation p.S1891Y 0.27 deleterious_low_confidence(0) benign(0.416) TCGA-AZ-4315-01 15 54919261 54919261 G T UNC13C Nonsense_Mutation p.E2199* 0.36 TCGA-AZ-4315-01 15 55651760 55651760 A C CCPG1 Silent p.T737T 0.33 TCGA-AZ-4315-01 15 55652396 55652396 G T CCPG1 Missense_Mutation p.F525L 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 15 55657487 55657487 G A CCPG1 Missense_Mutation p.R243C 0.32 deleterious(0) probably_damaging(0.969) TCGA-AZ-4315-01 15 55932021 55932021 G A PRTG Missense_Mutation p.R715C 0.33 deleterious(0.01) probably_damaging(0.953) TCGA-AZ-4315-01 15 56208141 56208141 G A NEDD4 Missense_Mutation p.H297Y 0.20 tolerated_low_confidence(0.06) possibly_damaging(0.584) TCGA-AZ-4315-01 15 56208812 56208812 G T NEDD4 Missense_Mutation p.S73Y 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.804) TCGA-AZ-4315-01 15 56208835 56208835 G A NEDD4 Silent p.N65N 0.41 TCGA-AZ-4315-01 15 56385698 56385698 G A RFX7 Missense_Mutation p.R1410C 0.21 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-AZ-4315-01 15 56726430 56726430 A C MNS1 Missense_Mutation p.M392R 0.36 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 15 57565325 57565325 C T TCF12 Missense_Mutation p.R615W 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 58430832 58430832 C T AQP9 Missense_Mutation p.A23V 0.41 tolerated(0.7) benign(0.002) TCGA-AZ-4315-01 15 58430855 58430855 T G AQP9 Missense_Mutation p.L31V 0.25 deleterious(0.01) possibly_damaging(0.795) TCGA-AZ-4315-01 15 58471460 58471460 A G AQP9 Missense_Mutation p.N210S 0.33 deleterious(0.04) probably_damaging(0.98) TCGA-AZ-4315-01 15 58476426 58476426 A G AQP9 3'UTR 0.30 TCGA-AZ-4315-01 15 59102504 59102504 C T FAM63B Nonsense_Mutation p.R347* 0.30 TCGA-AZ-4315-01 15 59185132 59185132 C T SLTM Missense_Mutation p.R621H 0.36 deleterious(0) unknown(0) TCGA-AZ-4315-01 15 59383297 59383297 C T RNF111 Missense_Mutation p.R904C 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 15 59972472 59972472 A G BNIP2 Missense_Mutation p.I150T 0.39 tolerated(0.46) benign(0.013) TCGA-AZ-4315-01 15 60740276 60740276 A C NARG2 Missense_Mutation p.F730V 0.34 tolerated(0.38) benign(0.214) TCGA-AZ-4315-01 15 60745670 60745670 G A NARG2 Intron 0.33 TCGA-AZ-4315-01 15 62146701 62146701 C A VPS13C Missense_Mutation p.M3739I 0.32 tolerated_low_confidence(0.07) benign(0.01) TCGA-AZ-4315-01 15 62161751 62161751 G T VPS13C Missense_Mutation p.P3566T 0.37 deleterious(0.02) probably_damaging(0.951) TCGA-AZ-4315-01 15 62204098 62204098 C T VPS13C Missense_Mutation p.E2886K 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 62214690 62214690 C T VPS13C Missense_Mutation p.R2294Q 0.33 tolerated(0.05) benign(0.059) TCGA-AZ-4315-01 15 62233987 62233987 C T VPS13C Missense_Mutation p.E1810K 0.28 tolerated(0.93) benign(0.069) TCGA-AZ-4315-01 15 62256941 62256941 T G VPS13C Missense_Mutation p.Q1057H 0.33 tolerated(0.12) benign(0.008) TCGA-AZ-4315-01 15 62277144 62277144 C A VPS13C Nonsense_Mutation p.E545* 0.37 TCGA-AZ-4315-01 15 62299515 62299515 C A VPS13C Nonsense_Mutation p.E428* 0.36 TCGA-AZ-4315-01 15 62362515 62362515 C A C2CD4A 3'UTR 0.28 TCGA-AZ-4315-01 15 62362869 62362869 C A C2CD4A 3'UTR 0.27 TCGA-AZ-4315-01 15 63131096 63131096 C T TLN2 Silent p.V2472V 0.31 TCGA-AZ-4315-01 15 63358260 63358260 C T TPM1 Intron 0.25 TCGA-AZ-4315-01 15 63419807 63419807 G A LACTB Missense_Mutation p.E291K 0.31 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 15 63555801 63555801 C T RAB8B Missense_Mutation p.R203C 0.38 tolerated(0.07) possibly_damaging(0.72) TCGA-AZ-4315-01 15 63571391 63571391 T C APH1B Missense_Mutation p.S49P 0.30 deleterious(0) benign(0.346) TCGA-AZ-4315-01 15 63571505 63571505 C T APH1B Nonsense_Mutation p.R87* 0.20 TCGA-AZ-4315-01 15 63932495 63932495 C A HERC1 Missense_Mutation p.W3919C 0.29 probably_damaging(0.998) TCGA-AZ-4315-01 15 63935724 63935724 G A HERC1 Missense_Mutation p.A3737V 0.38 benign(0.009) TCGA-AZ-4315-01 15 63966866 63966866 C T HERC1 Silent p.Q2507Q 0.35 TCGA-AZ-4315-01 15 64021758 64021758 C T HERC1 Missense_Mutation p.E987K 0.33 benign(0.011) TCGA-AZ-4315-01 15 64067336 64067336 G A HERC1 Nonsense_Mutation p.R163* 0.26 TCGA-AZ-4315-01 15 64332424 64332424 G A DAPK2 Missense_Mutation p.P13S 0.33 tolerated(0.77) benign(0) TCGA-AZ-4315-01 15 64452363 64452363 G A PPIB Missense_Mutation p.R95C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 15 64658021 64658021 T G KIAA0101 3'UTR 0.40 TCGA-AZ-4315-01 15 65152191 65152191 C T AC069368.3 Silent p.F126F 0.14 TCGA-AZ-4315-01 15 65496652 65496652 C A CILP Missense_Mutation p.K291N 0.28 tolerated(0.49) benign(0.297) TCGA-AZ-4315-01 15 65684561 65684561 C T IGDCC4 Missense_Mutation p.R678H 0.22 tolerated(0.25) benign(0.009) TCGA-AZ-4315-01 15 65686779 65686779 A G IGDCC4 Missense_Mutation p.Y562H 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 65780044 65780044 G A DPP8 Silent p.F329F 0.34 TCGA-AZ-4315-01 15 65993464 65993464 T G DENND4A Missense_Mutation p.N876H 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 66727430 66727430 G A MAP2K1 Missense_Mutation p.R49H 0.40 tolerated(0.07) benign(0.125) TCGA-AZ-4315-01 15 66791710 66791710 G T RPL4 3'UTR 0.46 TCGA-AZ-4315-01 15 66791796 66791796 C A RPL4 Missense_Mutation p.K411N 0.44 deleterious_low_confidence(0) unknown(0) TCGA-AZ-4315-01 15 67479715 67479715 A C SMAD3 Missense_Mutation p.K341T 0.33 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 15 67479737 67479737 C T SMAD3 Silent p.F348F 0.14 TCGA-AZ-4315-01 15 67553664 67553665 - A IQCH Frame_Shift_Ins p.G38Rfs*10 0.18 TCGA-AZ-4315-01 15 68445935 68445935 C T PIAS1 Missense_Mutation p.S279F 0.24 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 15 68606204 68606204 T C ITGA11 Missense_Mutation p.D932G 0.38 deleterious(0.01) probably_damaging(0.986) TCGA-AZ-4315-01 15 69006921 69006921 C T CORO2B Silent p.I263I 0.39 TCGA-AZ-4315-01 15 69006963 69006963 C A CORO2B Missense_Mutation p.F277L 0.38 tolerated(0.08) possibly_damaging(0.575) TCGA-AZ-4315-01 15 69238672 69238672 C A SPESP1 Missense_Mutation p.L267I 0.34 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 15 69561214 69561214 C T GLCE Silent p.D495D 0.40 TCGA-AZ-4315-01 15 69718507 69718507 A C KIF23 Missense_Mutation p.E278A 0.19 tolerated(0.11) benign(0.369) TCGA-AZ-4315-01 15 70959782 70959782 C T UACA Missense_Mutation p.E1081K 0.42 deleterious(0.05) benign(0.008) TCGA-AZ-4315-01 15 70960412 70960412 T C UACA Missense_Mutation p.T871A 0.27 tolerated(0.96) benign(0.001) TCGA-AZ-4315-01 15 70976666 70976666 C A UACA Missense_Mutation p.R241I 0.32 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 15 71143956 71143956 G A LARP6 Intron 0.42 TCGA-AZ-4315-01 15 71174648 71174648 A C THAP10 3'UTR 0.45 TCGA-AZ-4315-01 15 71302170 71302170 C A LRRC49 Missense_Mutation p.L483I 0.30 tolerated(0.86) benign(0.065) TCGA-AZ-4315-01 15 71447238 71447238 C T THSD4 Silent p.F22F 0.25 TCGA-AZ-4315-01 15 71548971 71548971 G T THSD4 Missense_Mutation p.R311I 0.35 tolerated(0.06) benign(0.122) TCGA-AZ-4315-01 15 72039269 72039269 G A THSD4 Missense_Mutation p.R710H 0.35 tolerated(0.09) benign(0.333) TCGA-AZ-4315-01 15 72057379 72057379 C T THSD4 Silent p.S870S 0.34 TCGA-AZ-4315-01 15 72454682 72454682 C T GRAMD2 Silent p.A331A 0.27 TCGA-AZ-4315-01 15 72533877 72533877 G A PARP6 Silent p.G604G 0.39 TCGA-AZ-4315-01 15 72954890 72954890 G A GOLGA6B Missense_Mutation p.R382Q 0.59 tolerated(0.41) benign(0.417) TCGA-AZ-4315-01 15 73015163 73015163 A G BBS4 Missense_Mutation p.Y145C 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-AZ-4315-01 15 73614799 73614799 G T HCN4 3'UTR 0.35 TCGA-AZ-4315-01 15 73615907 73615907 C T HCN4 Missense_Mutation p.A843T 0.24 tolerated_low_confidence(0.48) unknown(0) TCGA-AZ-4315-01 15 73994649 73994649 G A CD276 Missense_Mutation p.D45N 0.33 deleterious(0.02) probably_damaging(0.989) TCGA-AZ-4315-01 15 73996001 73996001 A G CD276 Silent p.G245G 0.42 TCGA-AZ-4315-01 15 74335667 74335667 G T PML Intron 0.65 TCGA-AZ-4315-01 15 74428371 74428371 C T ISLR2 3'UTR 0.31 TCGA-AZ-4315-01 15 74428483 74428483 C T ISLR2 3'UTR 0.45 TCGA-AZ-4315-01 15 74836272 74836272 G A ARID3B 5'UTR 0.48 TCGA-AZ-4315-01 15 74836553 74836553 G A ARID3B Silent p.E92E 0.38 TCGA-AZ-4315-01 15 75012994 75012994 C T CYP1A1 Missense_Mutation p.G459S 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 75498843 75498843 A C C15orf39 Missense_Mutation p.K152Q 0.29 tolerated(0.07) possibly_damaging(0.607) TCGA-AZ-4315-01 15 75632089 75632089 C T COMMD4 Silent p.S143S 0.34 TCGA-AZ-4315-01 15 75969723 75969723 G A CSPG4 Missense_Mutation p.L1713F 0.30 deleterious(0) possibly_damaging(0.742) TCGA-AZ-4315-01 15 75985482 75985482 C T CSPG4 Missense_Mutation p.E61K 0.32 tolerated(0.08) benign(0.327) TCGA-AZ-4315-01 15 76225473 76225473 T C FBXO22 3'UTR 0.40 TCGA-AZ-4315-01 15 76254214 76254214 G A NRG4 Missense_Mutation p.A69V 0.33 tolerated(0.92) benign(0.024) TCGA-AZ-4315-01 15 76508757 76508757 T C ETFA 3'UTR 0.32 TCGA-AZ-4315-01 15 76696890 76696890 T C SCAPER Missense_Mutation p.T1148A 0.48 tolerated(0.4) benign(0.002) TCGA-AZ-4315-01 15 77020999 77020999 C T SCAPER Missense_Mutation p.R701Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 15 77059273 77059273 C T SCAPER Missense_Mutation p.D469N 0.36 tolerated(0.17) benign(0.077) TCGA-AZ-4315-01 15 77134214 77134214 T G SCAPER Missense_Mutation p.K85T 0.36 tolerated(0.06) possibly_damaging(0.856) TCGA-AZ-4315-01 15 77407194 77407194 G A PEAK1 Silent p.C1515C 0.44 TCGA-AZ-4315-01 15 77759491 77759491 C T HMG20A Nonsense_Mutation p.R98* 0.26 TCGA-AZ-4315-01 15 77906832 77906832 G A LINGO1 Missense_Mutation p.R473W 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 77907694 77907694 G A LINGO1 Silent p.R185R 0.35 TCGA-AZ-4315-01 15 78211172 78211172 C T RP11-114H24.7 Intron 0.33 TCGA-AZ-4315-01 15 78211435 78211435 T C RP11-114H24.7 Intron 0.37 TCGA-AZ-4315-01 15 78217391 78217391 C A RP11-114H24.7 3'Flank 0.26 TCGA-AZ-4315-01 15 78395921 78395921 G A SH2D7 3'UTR 0.27 TCGA-AZ-4315-01 15 78582380 78582380 G A WDR61 Silent p.V127V 0.32 TCGA-AZ-4315-01 15 78633508 78633508 A G CRABP1 Missense_Mutation p.N65S 0.44 tolerated(0.35) benign(0.003) TCGA-AZ-4315-01 15 78780136 78780136 G A IREB2 Missense_Mutation p.A591T 0.37 tolerated(0.37) benign(0.237) TCGA-AZ-4315-01 15 78780591 78780591 C T IREB2 Missense_Mutation p.R622C 0.26 deleterious(0.05) benign(0.047) TCGA-AZ-4315-01 15 78805532 78805532 T G HYKK Silent p.V34V 0.39 TCGA-AZ-4315-01 15 78841333 78841333 G T PSMA4 3'UTR 0.18 TCGA-AZ-4315-01 15 78882574 78882574 A C CHRNA5 Missense_Mutation p.K281Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 15 78885706 78885706 G A CHRNA5 3'UTR 0.22 TCGA-AZ-4315-01 15 78888891 78888891 G A CHRNA3 3'UTR 0.58 TCGA-AZ-4315-01 15 79217776 79217776 C T CTSH Missense_Mutation p.E236K 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 15 79223824 79223824 C T CTSH Missense_Mutation p.A173T 0.30 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 15 79277170 79277170 T C RASGRF1 Intron 0.54 TCGA-AZ-4315-01 15 79310205 79310205 G A RASGRF1 Silent p.I550I 0.29 TCGA-AZ-4315-01 15 79350694 79350694 G A RASGRF1 Silent p.I171I 0.26 TCGA-AZ-4315-01 15 79350760 79350760 G A RASGRF1 Silent p.I149I 0.23 TCGA-AZ-4315-01 15 79585758 79585758 C T ANKRD34C Silent p.G44G 0.36 TCGA-AZ-4315-01 15 79587464 79587464 A C ANKRD34C 3'UTR 0.30 TCGA-AZ-4315-01 15 79588588 79588588 G A ANKRD34C 3'UTR 0.18 TCGA-AZ-4315-01 15 80253274 80253274 A G BCL2A1 3'UTR 0.37 TCGA-AZ-4315-01 15 80452131 80452131 G A FAH Missense_Mutation p.A76T 0.32 tolerated(0.24) benign(0.009) TCGA-AZ-4315-01 15 80767561 80767561 A T ARNT2 Missense_Mutation p.T207S 0.31 tolerated(0.23) benign(0.001) TCGA-AZ-4315-01 15 81591798 81591798 G A IL16 Missense_Mutation p.E711K 0.48 deleterious(0) possibly_damaging(0.887) TCGA-AZ-4315-01 15 81592755 81592755 G A IL16 Missense_Mutation p.E1030K 0.37 tolerated(0.14) benign(0.158) TCGA-AZ-4315-01 15 81625019 81625019 C T TMC3 Missense_Mutation p.R1015Q 0.28 tolerated_low_confidence(0.13) benign(0.024) TCGA-AZ-4315-01 15 82338000 82338000 C T MEX3B Missense_Mutation p.G16D 0.33 tolerated_low_confidence(0.07) benign(0.01) TCGA-AZ-4315-01 15 82422793 82422793 C T EFTUD1 Missense_Mutation p.R1095Q 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 82575415 82575415 T C FAM154B 3'UTR 0.36 TCGA-AZ-4315-01 15 83222280 83222280 A C CPEB1 Missense_Mutation p.F334V 0.27 deleterious(0) possibly_damaging(0.885) TCGA-AZ-4315-01 15 83485507 83485507 G A WHAMM Missense_Mutation p.E283K 0.32 tolerated(0.12) probably_damaging(0.997) TCGA-AZ-4315-01 15 83561463 83561463 G A HOMER2 Missense_Mutation p.R46W 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 83561567 83561567 G A HOMER2 Missense_Mutation p.A11V 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 83687481 83687481 T C BTBD1 Missense_Mutation p.Y423C 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 15 83932889 83932889 G T BNC1 Missense_Mutation p.L372I 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 15 84245375 84245375 A C SH3GL3 Missense_Mutation p.D169A 0.29 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 15 85166913 85166913 C T ZSCAN2 3'UTR 0.37 TCGA-AZ-4315-01 15 85188946 85188946 C T WDR73 Silent p.E213E 0.21 TCGA-AZ-4315-01 15 86123985 86123985 A T AKAP13 Missense_Mutation p.S896C 0.26 tolerated_low_confidence(0.07) benign(0.004) TCGA-AZ-4315-01 15 86124684 86124684 G A AKAP13 Missense_Mutation p.V1129I 0.33 tolerated_low_confidence(1) benign(0) TCGA-AZ-4315-01 15 86814924 86814924 A C AGBL1 Missense_Mutation p.I642L 0.34 deleterious(0.02) benign(0.098) TCGA-AZ-4315-01 15 88576168 88576168 A C NTRK3 Missense_Mutation p.V502G 0.39 tolerated(0.07) benign(0.097) TCGA-AZ-4315-01 15 89002734 89002734 G T MRPL46 3'UTR 0.38 TCGA-AZ-4315-01 15 89198861 89198861 C T ISG20 3'UTR 0.60 TCGA-AZ-4315-01 15 89395034 89395034 C T ACAN Missense_Mutation p.A679V 0.29 tolerated(0.2) unknown(0) TCGA-AZ-4315-01 15 89424880 89424880 G A HAPLN3 Silent p.I67I 0.13 TCGA-AZ-4315-01 15 89804904 89804904 C A FANCI Missense_Mutation p.S126Y 0.25 deleterious(0) possibly_damaging(0.774) TCGA-AZ-4315-01 15 90276307 90276307 C A WDR93 Missense_Mutation p.F467L 0.33 tolerated(0.41) possibly_damaging(0.487) TCGA-AZ-4315-01 15 90628097 90628097 T C IDH2 Missense_Mutation p.S408G 0.35 tolerated_low_confidence(0.1) benign(0.208) TCGA-AZ-4315-01 15 91181987 91181987 C A CRTC3 Missense_Mutation p.F496L 0.15 tolerated(0.67) probably_damaging(0.986) TCGA-AZ-4315-01 15 91290720 91290720 C T BLM Missense_Mutation p.S33L 0.11 tolerated(0.18) benign(0.004) TCGA-AZ-4315-01 15 91491117 91491117 G A UNC45A Missense_Mutation p.R531Q 0.43 deleterious(0.02) possibly_damaging(0.889) TCGA-AZ-4315-01 15 91795714 91795714 G A SV2B Missense_Mutation p.A250T 0.32 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 15 91835653 91835653 A G SV2B Silent p.G641G 0.37 TCGA-AZ-4315-01 15 92459652 92459652 G A SLCO3A1 Missense_Mutation p.D204N 0.41 tolerated(0.09) probably_damaging(0.999) TCGA-AZ-4315-01 15 95019951 95019951 C T MCTP2 Nonsense_Mutation p.R833* 0.22 TCGA-AZ-4315-01 15 96880702 96880702 C T NR2F2 Missense_Mutation p.R366C 0.29 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 15 98509248 98509248 C T ARRDC4 Silent p.V166V 0.65 TCGA-AZ-4315-01 15 99672942 99672942 G A SYNM Silent p.S1458S 0.27 TCGA-AZ-4315-01 15 99874244 99874244 C T LRRC28 Missense_Mutation p.R168C 0.32 tolerated(0.15) benign(0.01) TCGA-AZ-4315-01 16 11063154 11063154 C A CLEC16A Missense_Mutation p.F160L 0.23 deleterious(0.04) possibly_damaging(0.652) TCGA-AZ-4315-01 16 11369806 11369806 G T PRM2 Intron 0.27 TCGA-AZ-4315-01 16 11770661 11770661 G A SNN 3'UTR 0.35 TCGA-AZ-4315-01 16 11772786 11772786 C A SNN 3'UTR 0.44 TCGA-AZ-4315-01 16 11773231 11773231 C T TXNDC11 Silent p.A899A 0.29 TCGA-AZ-4315-01 16 12136798 12136798 G A SNX29 Missense_Mutation p.E98K 0.31 deleterious(0) possibly_damaging(0.455) TCGA-AZ-4315-01 16 12371858 12371858 G T SNX29 Nonsense_Mutation p.E583* 0.29 TCGA-AZ-4315-01 16 135519 135519 C T MPG Missense_Mutation p.L214F 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 16 14576580 14576580 C A PARN Missense_Mutation p.D529Y 0.26 deleterious(0) probably_damaging(0.967) TCGA-AZ-4315-01 16 14951175 14951175 C A NOMO1 Silent p.I355I 0.25 TCGA-AZ-4315-01 16 15125602 15125602 T C PDXDC1 Silent p.T470T 0.37 TCGA-AZ-4315-01 16 15127143 15127143 T C PDXDC1 Missense_Mutation p.Y567H 0.35 tolerated(0.45) possibly_damaging(0.702) TCGA-AZ-4315-01 16 15178511 15178511 C A RRN3 Missense_Mutation p.R195I 0.10 deleterious(0) benign(0.312) TCGA-AZ-4315-01 16 15179538 15179538 C T RRN3 Missense_Mutation p.E164K 0.32 tolerated(0.09) benign(0.285) TCGA-AZ-4315-01 16 1549247 1549247 G A TELO2 Silent p.S282S 0.32 TCGA-AZ-4315-01 16 15690281 15690281 A C KIAA0430 3'UTR 0.35 TCGA-AZ-4315-01 16 15788093 15788093 G A NDE1 Missense_Mutation p.D259N 0.26 deleterious(0.02) probably_damaging(0.953) TCGA-AZ-4315-01 16 15818429 15818429 G A NDE1 3'UTR 0.47 TCGA-AZ-4315-01 16 15850222 15850222 G A MYH11 Silent p.F582F 0.29 TCGA-AZ-4315-01 16 15931906 15931906 C A MYH11 Missense_Mutation p.K68N 0.36 probably_damaging(0.999) TCGA-AZ-4315-01 16 16138480 16138480 G A ABCC1 Missense_Mutation p.S328N 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 16 162721 162721 G A NPRL3 Silent p.I149I 0.28 TCGA-AZ-4315-01 16 16276663 16276663 C T ABCC6 Missense_Mutation p.E690K 0.40 tolerated(1) benign(0) TCGA-AZ-4315-01 16 16418991 16418991 C T PKD1P1 RNA 0.12 TCGA-AZ-4315-01 16 1797261 1797261 C T MAPK8IP3 Missense_Mutation p.R326C 0.34 deleterious(0) probably_damaging(0.943) TCGA-AZ-4315-01 16 18823110 18823110 C T SMG1 Silent p.P3627P 0.33 TCGA-AZ-4315-01 16 1910427 1910427 T G MEIOB Missense_Mutation p.E103D 0.30 tolerated(0.32) benign(0.283) TCGA-AZ-4315-01 16 19128149 19128149 T G ITPRIPL2 3'UTR 0.34 TCGA-AZ-4315-01 16 19132080 19132080 G A ITPRIPL2 3'UTR 0.28 TCGA-AZ-4315-01 16 19501790 19501790 G A TMC5 Missense_Mutation p.D883N 0.33 tolerated(0.15) benign(0.049) TCGA-AZ-4315-01 16 19505584 19505584 G A TMC5 Missense_Mutation p.E943K 0.22 deleterious(0.01) possibly_damaging(0.566) TCGA-AZ-4315-01 16 19516399 19516399 G A GDE1 Missense_Mutation p.R218W 0.28 deleterious(0.01) possibly_damaging(0.67) TCGA-AZ-4315-01 16 19867959 19867959 C A IQCK 3'UTR 0.26 TCGA-AZ-4315-01 16 2011186 2011186 T C NDUFB10 Missense_Mutation p.Y55H 0.32 tolerated(0.09) possibly_damaging(0.892) TCGA-AZ-4315-01 16 20344483 20344483 T G UMOD 3'UTR 0.20 TCGA-AZ-4315-01 16 20359876 20359876 C T UMOD Silent p.A249A 0.62 TCGA-AZ-4315-01 16 20359889 20359889 C T UMOD Missense_Mutation p.R245H 0.35 tolerated(0.08) benign(0.14) TCGA-AZ-4315-01 16 20362134 20362134 T G UMOD Intron 0.43 TCGA-AZ-4315-01 16 20387498 20387498 G A PDILT Silent p.V145V 0.37 TCGA-AZ-4315-01 16 20441125 20441125 T C ACSM5 Splice_Site p.X375_splice 0.50 TCGA-AZ-4315-01 16 20554308 20554308 C A ACSM2B Missense_Mutation p.E479D 0.30 deleterious(0) possibly_damaging(0.768) TCGA-AZ-4315-01 16 20554515 20554515 C A ACSM2B Missense_Mutation p.D451Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 16 20570642 20570642 C T ACSM2B Missense_Mutation p.G102D 0.33 deleterious(0.05) probably_damaging(0.967) TCGA-AZ-4315-01 16 20749150 20749151 - T THUMPD1 Frame_Shift_Ins p.Y179Ifs*11 0.26 TCGA-AZ-4315-01 16 20839776 20839776 G A AC004381.6 Missense_Mutation p.D359N 0.31 tolerated(0.5) benign(0.03) TCGA-AZ-4315-01 16 20860956 20860956 A C AC004381.6 3'UTR 0.27 TCGA-AZ-4315-01 16 20975791 20975791 C T DNAH3 Missense_Mutation p.E3139K 0.28 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 16 20990739 20990739 C T DNAH3 Silent p.T2663T 0.33 TCGA-AZ-4315-01 16 21049220 21049220 C T DNAH3 Missense_Mutation p.A1605T 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 16 21061326 21061326 C T DNAH3 Missense_Mutation p.A1418T 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 16 21109967 21109967 C A DNAH3 Missense_Mutation p.K830N 0.35 tolerated(0.28) benign(0.006) TCGA-AZ-4315-01 16 21716300 21716300 C T OTOA Intron 0.47 TCGA-AZ-4315-01 16 21739617 21739617 A G OTOA Missense_Mutation p.H691R 0.15 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 16 22108898 22108898 G T VWA3A Missense_Mutation p.R36M 0.30 deleterious_low_confidence(0) benign(0.017) TCGA-AZ-4315-01 16 22167359 22167359 C T VWA3A 3'UTR 0.24 TCGA-AZ-4315-01 16 223666 223666 C A HBA2 3'UTR 0.34 TCGA-AZ-4315-01 16 2237461 2237461 G A CASKIN1 Missense_Mutation p.L207F 0.24 possibly_damaging(0.667) TCGA-AZ-4315-01 16 22447015 22447015 A C RRN3P3 RNA 0.28 TCGA-AZ-4315-01 16 23226491 23226491 G A SCNN1G Missense_Mutation p.E551K 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 16 23478866 23478866 T C GGA2 3'UTR 0.36 TCGA-AZ-4315-01 16 23492091 23492091 G A GGA2 Missense_Mutation p.A294V 0.33 deleterious(0.04) benign(0.424) TCGA-AZ-4315-01 16 23698843 23698843 C T PLK1 Nonsense_Mutation p.R364* 0.35 TCGA-AZ-4315-01 16 24043566 24043566 A C PRKCB Missense_Mutation p.D133A 0.36 tolerated(0.19) benign(0.005) TCGA-AZ-4315-01 16 24183630 24183630 G A PRKCB Missense_Mutation p.D427N 0.28 tolerated(0.05) probably_damaging(0.97) TCGA-AZ-4315-01 16 24202459 24202459 G A PRKCB Missense_Mutation p.E591K 0.42 deleterious(0.03) benign(0.296) TCGA-AZ-4315-01 16 24231309 24231309 G A PRKCB 3'UTR 0.23 TCGA-AZ-4315-01 16 24578496 24578496 G T RBBP6 Missense_Mutation p.R541I 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AZ-4315-01 16 24581543 24581543 C T RBBP6 Missense_Mutation p.P1178S 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-AZ-4315-01 16 24829970 24829970 C T TNRC6A Missense_Mutation p.R1677C 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 16 24921761 24921761 C T SLC5A11 Silent p.F595F 0.56 TCGA-AZ-4315-01 16 24922888 24922888 C A SLC5A11 3'UTR 0.31 TCGA-AZ-4315-01 16 2522059 2522059 C T NTN3 Silent p.F119F 0.31 TCGA-AZ-4315-01 16 25240043 25240043 G A AQP8 3'UTR 0.38 TCGA-AZ-4315-01 16 25258385 25258385 C A ZKSCAN2 Missense_Mutation p.A378S 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-4315-01 16 2612185 2612185 C A PDPK1 Intron 0.58 TCGA-AZ-4315-01 16 26147496 26147496 A G HS3ST4 Missense_Mutation p.K433R 0.27 tolerated(1) benign(0.016) TCGA-AZ-4315-01 16 2647662 2647662 C T PDPK1 Missense_Mutation p.T522M 0.29 deleterious(0) probably_damaging(0.945) TCGA-AZ-4315-01 16 27788950 27788950 T G KIAA0556 Missense_Mutation p.L1524R 0.30 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 16 27895832 27895832 G A GSG1L Silent p.F175F 0.43 TCGA-AZ-4315-01 16 28157449 28157449 T G XPO6 Missense_Mutation p.S434R 0.31 tolerated(0.06) benign(0.157) TCGA-AZ-4315-01 16 2815954 2815954 C T SRRM2 Missense_Mutation p.R1809W 0.29 unknown(0) TCGA-AZ-4315-01 16 2816089 2816089 T C SRRM2 Missense_Mutation p.S1854P 0.28 unknown(0) TCGA-AZ-4315-01 16 28222861 28222861 C A XPO6 5'UTR 0.33 TCGA-AZ-4315-01 16 2880225 2880225 C T ZG16B 5'UTR 0.36 TCGA-AZ-4315-01 16 29097584 29097584 G T RRN3P2 RNA 0.29 TCGA-AZ-4315-01 16 29376084 29376084 G T SNX29P2 RNA 0.30 TCGA-AZ-4315-01 16 29676730 29676730 T C SPN 3'UTR 0.32 TCGA-AZ-4315-01 16 29871922 29871922 G A CDIPT Missense_Mutation p.R132W 0.35 deleterious(0) probably_damaging(0.984) TCGA-AZ-4315-01 16 30566405 30566405 C A ZNF764 3'UTR 0.27 TCGA-AZ-4315-01 16 30621372 30621372 G T ZNF689 5'UTR 0.23 TCGA-AZ-4315-01 16 3065826 3065826 A G CLDN6 Missense_Mutation p.V66A 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 16 30764777 30764777 G A PHKG2 Missense_Mutation p.R152Q 0.28 deleterious(0.01) benign(0.125) TCGA-AZ-4315-01 16 30778119 30778119 A G RNF40 Missense_Mutation p.T451A 0.40 tolerated(0.16) benign(0.209) TCGA-AZ-4315-01 16 31371059 31371059 G A ITGAX Missense_Mutation p.D157N 0.14 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 16 31372440 31372440 G A ITGAX Silent p.S306S 0.21 TCGA-AZ-4315-01 16 31390893 31390893 G A ITGAX Missense_Mutation p.E932K 0.37 deleterious(0.05) benign(0.174) TCGA-AZ-4315-01 16 3140145 3140145 G A ZSCAN10 Silent p.P375P 0.27 TCGA-AZ-4315-01 16 31422772 31422772 G T ITGAD Missense_Mutation p.E547D 0.38 tolerated(0.18) benign(0.002) TCGA-AZ-4315-01 16 31435470 31435470 C T ITGAD Silent p.F1069F 0.40 TCGA-AZ-4315-01 16 31435471 31435471 G A ITGAD Missense_Mutation p.D1070N 0.23 tolerated(1) benign(0.019) TCGA-AZ-4315-01 16 31487420 31487420 G A TGFB1I1 Missense_Mutation p.E268K 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 16 3169579 3169579 G T ZNF205 Missense_Mutation p.K306N 0.26 deleterious(0.02) possibly_damaging(0.546) TCGA-AZ-4315-01 16 32264972 32264972 T C TP53TG3D Silent p.L100L 0.21 TCGA-AZ-4315-01 16 32890832 32890832 C T SLC6A10P RNA 0.12 TCGA-AZ-4315-01 16 3293064 3293064 G A MEFV 3'UTR 0.29 TCGA-AZ-4315-01 16 3350221 3350221 G A TIGD7 Missense_Mutation p.R132W 0.37 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 16 3350227 3350227 G A TIGD7 Nonsense_Mutation p.R130* 0.35 TCGA-AZ-4315-01 16 3350656 3350657 - A TIGD7 5'UTR 0.22 TCGA-AZ-4315-01 16 3351311 3351311 G A TIGD7 5'UTR 0.28 TCGA-AZ-4315-01 16 3351789 3351789 C T TIGD7 5'UTR 0.25 TCGA-AZ-4315-01 16 3367379 3367379 G T ZNF75A Missense_Mutation p.R134I 0.35 deleterious(0.02) benign(0.444) TCGA-AZ-4315-01 16 34713055 34713055 C T RP11-80F22.9 RNA 0.26 TCGA-AZ-4315-01 16 3532546 3532546 C T NAA60 Silent p.V95V 0.29 TCGA-AZ-4315-01 16 3554795 3554795 G A CLUAP1 Missense_Mutation p.G33E 0.26 tolerated(0.76) benign(0.001) TCGA-AZ-4315-01 16 3598191 3598191 G A NLRC3 Silent p.G951G 0.50 TCGA-AZ-4315-01 16 3777684 3777684 G T CREBBP 3'UTR 0.30 TCGA-AZ-4315-01 16 3828114 3828114 A G CREBBP Missense_Mutation p.S671P 0.31 probably_damaging(0.986) TCGA-AZ-4315-01 16 3830755 3830755 G A CREBBP Missense_Mutation p.R601W 0.25 probably_damaging(0.994) TCGA-AZ-4315-01 16 4164270 4164270 C A ADCY9 Nonsense_Mutation p.E392* 0.36 TCGA-AZ-4315-01 16 4164759 4164759 C T ADCY9 Missense_Mutation p.E229K 0.37 deleterious(0.01) possibly_damaging(0.504) TCGA-AZ-4315-01 16 417552 417552 G A MRPL28 3'UTR 0.30 TCGA-AZ-4315-01 16 4494711 4494711 A C DNAJA3 Missense_Mutation p.E326D 0.32 deleterious(0.02) probably_damaging(0.915) TCGA-AZ-4315-01 16 4606789 4606789 A G C16orf96 Missense_Mutation p.D100G 0.35 tolerated(0.19) benign(0.425) TCGA-AZ-4315-01 16 46534648 46534648 C A ANKRD26P1 RNA 0.44 TCGA-AZ-4315-01 16 47292641 47292641 T C ITFG1 Missense_Mutation p.D411G 0.45 deleterious(0) possibly_damaging(0.719) TCGA-AZ-4315-01 16 47581456 47581456 C T PHKB Missense_Mutation p.S236L 0.33 deleterious(0) possibly_damaging(0.883) TCGA-AZ-4315-01 16 47683017 47683017 C T PHKB Missense_Mutation p.R567C 0.28 deleterious(0.03) possibly_damaging(0.479) TCGA-AZ-4315-01 16 47730390 47730390 C T PHKB Silent p.I998I 0.30 TCGA-AZ-4315-01 16 4787868 4787868 C T C16orf71 Missense_Mutation p.S66L 0.22 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 16 48162523 48162523 C A ABCC12 Missense_Mutation p.K454N 0.28 tolerated(0.33) benign(0.001) TCGA-AZ-4315-01 16 4836084 4836084 G T SEPT12 Silent p.S63S 0.31 TCGA-AZ-4315-01 16 4939004 4939004 G A PPL Missense_Mutation p.S791F 0.32 deleterious(0) possibly_damaging(0.775) TCGA-AZ-4315-01 16 49670555 49670555 C T ZNF423 Silent p.A836A 0.39 TCGA-AZ-4315-01 16 50353825 50353825 C T BRD7 Missense_Mutation p.E626K 0.35 tolerated(0.27) benign(0.068) TCGA-AZ-4315-01 16 50362652 50362652 C T BRD7 Missense_Mutation p.E339K 0.28 tolerated(0.17) benign(0.015) TCGA-AZ-4315-01 16 50667707 50667707 G A NKD1 3'UTR 0.28 TCGA-AZ-4315-01 16 50813778 50813778 A C CYLD Missense_Mutation p.E447D 0.40 tolerated(0.51) benign(0) TCGA-AZ-4315-01 16 51175382 51175382 G A SALL1 Missense_Mutation p.R251C 0.33 tolerated(0.06) probably_damaging(0.912) TCGA-AZ-4315-01 16 51176001 51176001 G T SALL1 Silent p.V44V 0.42 TCGA-AZ-4315-01 16 51185104 51185104 C T SALL1 Missense_Mutation p.E17K 0.50 tolerated(0.16) benign(0.026) TCGA-AZ-4315-01 16 5121817 5121817 A C ALG1 5'Flank 0.14 TCGA-AZ-4315-01 16 53261310 53261310 G T CHD9 Missense_Mutation p.E682D 0.27 probably_damaging(0.954) TCGA-AZ-4315-01 16 53404685 53404685 A C RP11-44F14.1 RNA 0.30 TCGA-AZ-4315-01 16 53476733 53476733 G A RBL2 Missense_Mutation p.E179K 0.38 deleterious(0.04) possibly_damaging(0.491) TCGA-AZ-4315-01 16 53653105 53653105 G A RPGRIP1L Missense_Mutation p.R1150W 0.29 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 16 53844116 53844116 A C FTO Missense_Mutation p.E37A 0.34 tolerated(0.07) probably_damaging(0.934) TCGA-AZ-4315-01 16 55358986 55358986 G A IRX6 5'UTR 0.30 TCGA-AZ-4315-01 16 55363091 55363091 G A IRX6 Missense_Mutation p.D401N 0.42 tolerated(0.22) benign(0.002) TCGA-AZ-4315-01 16 55532302 55532302 G A MMP2 Missense_Mutation p.A571T 0.32 deleterious(0.02) probably_damaging(0.945) TCGA-AZ-4315-01 16 55583308 55583308 A C LPCAT2 Missense_Mutation p.K352T 0.31 deleterious(0.03) possibly_damaging(0.831) TCGA-AZ-4315-01 16 55601051 55601051 T C CAPNS2 Missense_Mutation p.V128A 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 16 55608568 55608568 G A LPCAT2 Missense_Mutation p.R414Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 16 55801297 55801297 C T CES1P1 RNA 0.28 TCGA-AZ-4315-01 16 55807845 55807845 G A CES1P1 RNA 0.30 TCGA-AZ-4315-01 16 55844868 55844868 A G CES1 Missense_Mutation p.S381P 0.20 deleterious(0.01) benign(0.089) TCGA-AZ-4315-01 16 55860154 55860154 C T CES1 Missense_Mutation p.R105Q 0.12 tolerated(0.07) benign(0.055) TCGA-AZ-4315-01 16 55880244 55880244 G A CES5A 3'UTR 0.29 TCGA-AZ-4315-01 16 55883596 55883596 C T CES5A Missense_Mutation p.A484T 0.29 tolerated(0.18) benign(0.019) TCGA-AZ-4315-01 16 55907832 55907832 G A CES5A Missense_Mutation p.A93V 0.37 deleterious(0) benign(0.175) TCGA-AZ-4315-01 16 56362619 56362619 C A GNAO1 Missense_Mutation p.A127D 0.27 deleterious(0.04) possibly_damaging(0.634) TCGA-AZ-4315-01 16 56388953 56388953 C T RP11-441F2.5 5'Flank 0.40 TCGA-AZ-4315-01 16 56466417 56466417 G A NUDT21 3'UTR 0.21 TCGA-AZ-4315-01 16 56534782 56534782 C T BBS2 Missense_Mutation p.V461M 0.29 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 16 56548400 56548400 C A BBS2 Missense_Mutation p.D104Y 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 16 56599027 56599027 C T MT4 5'UTR 0.24 TCGA-AZ-4315-01 16 56669797 56669797 C T MT1M 3'Flank 0.55 TCGA-AZ-4315-01 16 56673920 56673920 T G MT1A 3'UTR 0.68 TCGA-AZ-4315-01 16 56704934 56704934 G T MT1H 3'UTR 0.09 TCGA-AZ-4315-01 16 56864471 56864471 C T NUP93 Missense_Mutation p.A320V 0.30 tolerated(0.11) probably_damaging(0.997) TCGA-AZ-4315-01 16 56904079 56904079 T G SLC12A3 Missense_Mutation p.F225V 0.43 tolerated(0.08) probably_damaging(0.985) TCGA-AZ-4315-01 16 57003556 57003556 C T CETP Silent p.I134I 0.22 TCGA-AZ-4315-01 16 57057706 57057706 G A NLRC5 Missense_Mutation p.R122H 0.19 deleterious(0.01) probably_damaging(0.919) TCGA-AZ-4315-01 16 57063689 57063689 C T NLRC5 Missense_Mutation p.R750W 0.33 deleterious(0) benign(0.39) TCGA-AZ-4315-01 16 57101739 57101739 C T NLRC5 Missense_Mutation p.R1500W 0.34 deleterious(0.04) probably_damaging(0.982) TCGA-AZ-4315-01 16 57147239 57147239 G A CPNE2 Missense_Mutation p.A74T 0.38 tolerated(0.5) benign(0.015) TCGA-AZ-4315-01 16 57147358 57147358 G A CPNE2 Silent p.Q113Q 0.29 TCGA-AZ-4315-01 16 57712190 57712190 G A GPR97 Missense_Mutation p.V152I 0.41 tolerated(1) benign(0.001) TCGA-AZ-4315-01 16 57731917 57731917 C T CCDC135 Missense_Mutation p.A19V 0.34 deleterious_low_confidence(0.04) unknown(0) TCGA-AZ-4315-01 16 57957274 57957274 G A CNGB1 Missense_Mutation p.P516S 0.29 tolerated(0.08) benign(0.334) TCGA-AZ-4315-01 16 58021324 58021324 G A TEPP Nonsense_Mutation p.W297* 0.45 TCGA-AZ-4315-01 16 58318584 58318584 G A PRSS54 Silent p.F188F 0.35 TCGA-AZ-4315-01 16 58327707 58327707 G A PRSS54 Missense_Mutation p.A5V 0.25 tolerated_low_confidence(0.54) benign(0) TCGA-AZ-4315-01 16 61689449 61689449 C T CDH8 Missense_Mutation p.E611K 0.30 deleterious(0.03) probably_damaging(0.972) TCGA-AZ-4315-01 16 61761024 61761024 A C CDH8 Missense_Mutation p.L504V 0.33 tolerated(1) possibly_damaging(0.891) TCGA-AZ-4315-01 16 61891113 61891113 C T CDH8 Missense_Mutation p.D193N 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 16 65005849 65005849 C T CDH11 Silent p.K503K 0.30 TCGA-AZ-4315-01 16 65026878 65026878 C T CDH11 Missense_Mutation p.A195T 0.27 deleterious(0) benign(0.055) TCGA-AZ-4315-01 16 66424351 66424351 C A CDH5 Missense_Mutation p.S276Y 0.22 deleterious(0.03) possibly_damaging(0.722) TCGA-AZ-4315-01 16 67005182 67005182 C A CES3 Missense_Mutation p.F417L 0.43 tolerated(0.54) benign(0.001) TCGA-AZ-4315-01 16 67183443 67183443 C T B3GNT9 Missense_Mutation p.D316N 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 16 67314998 67314998 G A PLEKHG4 Missense_Mutation p.E242K 0.28 tolerated(0.07) benign(0.052) TCGA-AZ-4315-01 16 67323346 67323346 C A PLEKHG4 3'UTR 0.44 TCGA-AZ-4315-01 16 67325308 67325308 A G KCTD19 Silent p.C823C 0.31 TCGA-AZ-4315-01 16 67327935 67327935 C T KCTD19 Missense_Mutation p.R577Q 0.27 deleterious(0.03) benign(0.004) TCGA-AZ-4315-01 16 67575408 67575408 G A FAM65A Missense_Mutation p.A313T 0.27 deleterious(0) probably_damaging(0.967) TCGA-AZ-4315-01 16 67701268 67701268 C T C16orf86 Missense_Mutation p.R58C 0.30 tolerated(1) benign(0.09) TCGA-AZ-4315-01 16 67709441 67709441 G A GFOD2 Missense_Mutation p.R259C 0.27 tolerated(0.07) possibly_damaging(0.593) TCGA-AZ-4315-01 16 67839335 67839335 C T RANBP10 Missense_Mutation p.D115N 0.23 tolerated(0.11) probably_damaging(0.997) TCGA-AZ-4315-01 16 67982038 67982038 G A SLC12A4 Silent p.F593F 0.19 TCGA-AZ-4315-01 16 68012460 68012460 C A DPEP3 Missense_Mutation p.D187Y 0.41 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 16 68023293 68023293 C T DPEP2 Missense_Mutation p.D335N 0.26 tolerated(0.08) probably_damaging(0.993) TCGA-AZ-4315-01 16 68087493 68087493 G A DUS2 Missense_Mutation p.A67T 0.35 tolerated(0.58) benign(0.017) TCGA-AZ-4315-01 16 68338011 68338011 T C SLC7A6OS Missense_Mutation p.D199G 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 16 68598051 68598051 A C ZFP90 Missense_Mutation p.D454A 0.38 deleterious(0.03) benign(0.009) TCGA-AZ-4315-01 16 68896867 68896867 G T TANGO6 Missense_Mutation p.R252I 0.38 deleterious(0) possibly_damaging(0.522) TCGA-AZ-4315-01 16 68964156 68964156 T G TANGO6 Missense_Mutation p.L887V 0.34 tolerated(0.23) possibly_damaging(0.856) TCGA-AZ-4315-01 16 69184454 69184454 C T CIRH1A Silent p.F251F 0.29 TCGA-AZ-4315-01 16 69334793 69334793 C T SNTB2 Missense_Mutation p.S530L 0.34 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 16 70166075 70166075 G T PDPR Missense_Mutation p.R290I 0.24 tolerated(0.27) possibly_damaging(0.854) TCGA-AZ-4315-01 16 70358494 70358494 G T DDX19B Missense_Mutation p.Q132H 0.38 deleterious(0.02) benign(0.327) TCGA-AZ-4315-01 16 70509330 70509330 C A FUK Missense_Mutation p.L819I 0.38 tolerated(0.07) benign(0.022) TCGA-AZ-4315-01 16 70563093 70563093 G A SF3B3 Missense_Mutation p.V130I 0.30 tolerated(0.38) benign(0.01) TCGA-AZ-4315-01 16 70597800 70597800 C T SF3B3 Silent p.L770L 0.32 TCGA-AZ-4315-01 16 70866823 70866823 G A HYDIN Silent p.C4609C 0.44 TCGA-AZ-4315-01 16 70867827 70867827 G A HYDIN Missense_Mutation p.R4548C 0.37 probably_damaging(0.942) TCGA-AZ-4315-01 16 70900143 70900143 G A HYDIN Silent p.F3800F 0.38 TCGA-AZ-4315-01 16 70928360 70928360 G A HYDIN Silent p.I3080I 0.24 TCGA-AZ-4315-01 16 70975676 70975676 A G HYDIN Missense_Mutation p.L2239P 0.25 probably_damaging(0.991) TCGA-AZ-4315-01 16 71061423 71061423 T C HYDIN Intron 0.46 TCGA-AZ-4315-01 16 71122425 71122425 C T HYDIN Silent p.A483A 0.23 TCGA-AZ-4315-01 16 71171162 71171162 G T HYDIN Missense_Mutation p.S312Y 0.21 probably_damaging(0.983) TCGA-AZ-4315-01 16 71209610 71209610 G A HYDIN Missense_Mutation p.S139L 0.21 probably_damaging(0.921) TCGA-AZ-4315-01 16 71317410 71317410 C A CMTR2 3'UTR 0.39 TCGA-AZ-4315-01 16 71481763 71481763 G A ZNF23 3'UTR 0.55 TCGA-AZ-4315-01 16 71509357 71509357 C T ZNF19 Missense_Mutation p.A365T 0.11 tolerated(0.07) benign(0.371) TCGA-AZ-4315-01 16 71509740 71509740 C A ZNF19 Missense_Mutation p.R237I 0.12 deleterious(0.01) possibly_damaging(0.855) TCGA-AZ-4315-01 16 71748860 71748860 C T PHLPP2 Intron 0.31 TCGA-AZ-4315-01 16 71799469 71799469 G A AP1G1 Missense_Mutation p.R224C 0.46 deleterious(0) possibly_damaging(0.813) TCGA-AZ-4315-01 16 71887542 71887542 T G ATXN1L 3'UTR 0.36 TCGA-AZ-4315-01 16 71890834 71890834 C T ATXN1L 3'UTR 0.37 TCGA-AZ-4315-01 16 71984042 71984042 G A PKD1L3 RNA 0.27 TCGA-AZ-4315-01 16 72011251 72011251 C T PKD1L3 RNA 0.29 TCGA-AZ-4315-01 16 72057073 72057073 G A DHODH Missense_Mutation p.D277N 0.28 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 16 72153769 72153769 G A PMFBP1 Silent p.I996I 0.34 TCGA-AZ-4315-01 16 72829528 72829528 A G ZFHX3 Silent p.C2351C 0.30 TCGA-AZ-4315-01 16 72993237 72993237 C T ZFHX3 Missense_Mutation p.D270N 0.38 probably_damaging(0.959) TCGA-AZ-4315-01 16 74382840 74382840 C A RP11-252A24.2 RNA 0.23 TCGA-AZ-4315-01 16 746902 746902 G A FBXL16 Silent p.F168F 0.21 TCGA-AZ-4315-01 16 75563822 75563822 G A CHST5 Missense_Mutation p.P154L 0.29 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 16 75601996 75601996 T C GABARAPL2 Missense_Mutation p.V51A 0.30 deleterious(0.03) possibly_damaging(0.696) TCGA-AZ-4315-01 16 75665137 75665137 G T KARS Missense_Mutation p.L451I 0.29 deleterious(0.01) benign(0.172) TCGA-AZ-4315-01 16 76461385 76461385 T C CNTNAP4 Missense_Mutation p.Y118H 0.31 tolerated(1) benign(0.006) TCGA-AZ-4315-01 16 76461470 76461470 G A CNTNAP4 Missense_Mutation p.R146Q 0.30 deleterious(0) probably_damaging(0.96) TCGA-AZ-4315-01 16 76482093 76482093 C A CNTNAP4 Silent p.L216L 0.25 TCGA-AZ-4315-01 16 77232125 77232125 C T MON1B Missense_Mutation p.R522C 0.28 deleterious(0.02) benign(0.223) TCGA-AZ-4315-01 16 77233297 77233297 C A MON1B 3'UTR 0.37 TCGA-AZ-4315-01 16 77353810 77353810 C T ADAMTS18 Missense_Mutation p.R823H 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 16 77375624 77375624 C T ADAMTS18 Missense_Mutation p.G563R 0.25 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 16 7743332 7743332 C T RBFOX1 Intron 0.71 TCGA-AZ-4315-01 16 775420 775420 C A CCDC78 Missense_Mutation p.R143I 0.39 deleterious(0.04) benign(0.167) TCGA-AZ-4315-01 16 81061856 81061856 C A CENPN Missense_Mutation p.F297L 0.40 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 16 81097455 81097455 T G C16orf46 Missense_Mutation p.S36R 0.37 tolerated(0.44) benign(0.065) TCGA-AZ-4315-01 16 81194324 81194324 C T PKD1L2 RNA 0.08 TCGA-AZ-4315-01 16 816486 816486 C A MSLN Missense_Mutation p.P409H 0.29 deleterious(0.02) possibly_damaging(0.643) TCGA-AZ-4315-01 16 81942153 81942153 C T PLCG2 Missense_Mutation p.R564W 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 16 81954827 81954827 G A PLCG2 Missense_Mutation p.D754N 0.47 tolerated(0.54) benign(0.037) TCGA-AZ-4315-01 16 83251013 83251013 G A CDH13 Missense_Mutation p.E230K 0.21 deleterious(0.02) benign(0.392) TCGA-AZ-4315-01 16 84050307 84050307 T C SLC38A8 Missense_Mutation p.R327G 0.40 deleterious(0) benign(0.013) TCGA-AZ-4315-01 16 84432209 84432209 G A ATP2C2 Silent p.A68A 0.32 TCGA-AZ-4315-01 16 84808811 84808811 G A USP10 Missense_Mutation p.R730Q 0.34 deleterious(0) probably_damaging(0.943) TCGA-AZ-4315-01 16 84879404 84879404 G A CRISPLD2 Missense_Mutation p.E85K 0.35 deleterious(0.03) possibly_damaging(0.842) TCGA-AZ-4315-01 16 85012814 85012814 C A ZDHHC7 Missense_Mutation p.R210I 0.20 deleterious(0) possibly_damaging(0.888) TCGA-AZ-4315-01 16 86580241 86580241 G A MTHFSD Silent p.Y122Y 0.37 TCGA-AZ-4315-01 16 8736361 8736361 C T METTL22 Missense_Mutation p.L317F 0.29 deleterious(0) possibly_damaging(0.548) TCGA-AZ-4315-01 16 87448971 87448971 A C ZCCHC14 Missense_Mutation p.F325L 0.19 tolerated(0.05) possibly_damaging(0.463) TCGA-AZ-4315-01 16 87885346 87885346 G A SLC7A5 Silent p.F216F 0.08 TCGA-AZ-4315-01 16 88052157 88052157 C T BANP Missense_Mutation p.A252V 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 16 88105699 88105699 G A BANP Missense_Mutation p.A457T 0.33 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 16 8844355 8844355 G A ABAT Missense_Mutation p.R92Q 0.27 deleterious(0.05) benign(0.186) TCGA-AZ-4315-01 16 88498209 88498209 C T ZNF469 Missense_Mutation p.A1416V 0.33 benign(0.048) TCGA-AZ-4315-01 16 8890289 8890289 C A TMEM186 Missense_Mutation p.E54D 0.26 tolerated(0.11) benign(0.325) TCGA-AZ-4315-01 16 88945811 88945811 G A CBFA2T3 Missense_Mutation p.S510L 0.32 deleterious(0) benign(0.014) TCGA-AZ-4315-01 16 89256681 89256681 G A CDH15 Missense_Mutation p.E337K 0.39 tolerated(0.87) benign(0.028) TCGA-AZ-4315-01 16 89345633 89345633 G A ANKRD11 Silent p.F2439F 0.34 TCGA-AZ-4315-01 16 89345827 89345827 C T ANKRD11 Missense_Mutation p.E2375K 0.44 probably_damaging(0.993) TCGA-AZ-4315-01 16 8949087 8949087 G A CARHSP1 Silent p.V126V 0.30 TCGA-AZ-4315-01 16 89777112 89777112 G A VPS9D1 Silent p.F380F 0.34 TCGA-AZ-4315-01 16 89813022 89813022 C T FANCA Silent p.T1161T 0.35 TCGA-AZ-4315-01 16 90038564 90038564 G A CENPBD1 5'UTR 0.32 TCGA-AZ-4315-01 16 90076464 90076465 - T DBNDD1 5'UTR 0.24 TCGA-AZ-4315-01 16 90094049 90094049 G A GAS8 Silent p.P3P 0.58 TCGA-AZ-4315-01 16 90124882 90124882 A C PRDM7 Missense_Mutation p.F432V 0.29 tolerated_low_confidence(0.24) benign(0.007) TCGA-AZ-4315-01 16 9017177 9017177 C T USP7 Missense_Mutation p.R93Q 0.42 deleterious(0.02) probably_damaging(0.966) TCGA-AZ-4315-01 16 9210638 9210638 G A C16orf72 Missense_Mutation p.D233N 0.28 tolerated(0.08) possibly_damaging(0.704) TCGA-AZ-4315-01 16 9857021 9857021 G A GRIN2A Silent p.I1460I 0.21 TCGA-AZ-4315-01 17 10219235 10219235 T C MYH13 Silent p.A1282A 0.29 TCGA-AZ-4315-01 17 10222145 10222145 C T MYH13 Missense_Mutation p.D1234N 0.41 deleterious(0) possibly_damaging(0.687) TCGA-AZ-4315-01 17 10222492 10222492 C T MYH13 Missense_Mutation p.R1118H 0.29 deleterious(0.04) benign(0.016) TCGA-AZ-4315-01 17 10258071 10258071 C T MYH13 Missense_Mutation p.D311N 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-AZ-4315-01 17 1028682 1028682 C T ABR Missense_Mutation p.E28K 0.31 tolerated_low_confidence(0.21) benign(0.008) TCGA-AZ-4315-01 17 10316034 10316034 C T MYH8 Missense_Mutation p.A387T 0.34 tolerated(0.09) benign(0.02) TCGA-AZ-4315-01 17 10322033 10322033 C T MYH8 Missense_Mutation p.G147D 0.24 deleterious(0) probably_damaging(0.973) TCGA-AZ-4315-01 17 10346608 10346608 T G MYH4 3'UTR 0.35 TCGA-AZ-4315-01 17 10351975 10351975 A G MYH4 Silent p.D1497D 0.47 TCGA-AZ-4315-01 17 10395685 10395685 T G MYH1 3'UTR 0.36 TCGA-AZ-4315-01 17 10398336 10398336 G A MYH1 Missense_Mutation p.T1793M 0.23 deleterious(0.02) benign(0.399) TCGA-AZ-4315-01 17 10409414 10409414 C A MYH1 Missense_Mutation p.E657D 0.30 deleterious(0) benign(0.02) TCGA-AZ-4315-01 17 10433226 10433226 C A MYH2 Nonsense_Mutation p.E955* 0.32 TCGA-AZ-4315-01 17 10440670 10440670 T G MYH2 Missense_Mutation p.I593L 0.34 deleterious(0.03) benign(0.092) TCGA-AZ-4315-01 17 10440805 10440805 C T MYH2 Missense_Mutation p.D548N 0.32 deleterious(0.01) possibly_damaging(0.547) TCGA-AZ-4315-01 17 10549144 10549144 C T MYH3 Missense_Mutation p.G341S 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 11696826 11696826 C A DNAH9 Missense_Mutation p.L2690I 0.29 possibly_damaging(0.58) TCGA-AZ-4315-01 17 11725876 11725876 C A DNAH9 Missense_Mutation p.S2991Y 0.42 probably_damaging(0.977) TCGA-AZ-4315-01 17 11808979 11808979 G T DNAH9 Missense_Mutation p.D3868Y 0.37 possibly_damaging(0.738) TCGA-AZ-4315-01 17 1183562 1183562 C T TUSC5 Silent p.I89I 0.34 TCGA-AZ-4315-01 17 12896261 12896261 C A ELAC2 Silent p.R785R 0.32 TCGA-AZ-4315-01 17 13446926 13446926 G A HS3ST3A1 Intron 0.45 TCGA-AZ-4315-01 17 14095532 14095532 G A COX10 Missense_Mutation p.D308N 0.17 tolerated(0.06) benign(0.053) TCGA-AZ-4315-01 17 14139661 14139661 C T CDRT15 Missense_Mutation p.A117T 0.20 deleterious_low_confidence(0.03) benign(0.26) TCGA-AZ-4315-01 17 1416796 1416796 G A INPP5K Missense_Mutation p.S71L 0.35 deleterious(0.02) benign(0.321) TCGA-AZ-4315-01 17 15234404 15234404 T C TEKT3 Missense_Mutation p.M167V 0.32 tolerated(0.16) benign(0.158) TCGA-AZ-4315-01 17 15443428 15443428 A G TVP23C Intron 0.30 TCGA-AZ-4315-01 17 15458617 15458617 C A TVP23C-CDRT4 Missense_Mutation p.R25I 0.26 tolerated(0.12) benign(0.061) TCGA-AZ-4315-01 17 15492392 15492392 G A CDRT1 Missense_Mutation p.S719L 0.21 benign(0.004) TCGA-AZ-4315-01 17 15501877 15501877 G A RP11-385D13.1 Silent p.L818L 0.24 TCGA-AZ-4315-01 17 15584254 15584254 C A TRIM16 5'UTR 0.29 TCGA-AZ-4315-01 17 1559773 1559773 G A PRPF8 Silent p.F1902F 0.25 TCGA-AZ-4315-01 17 15620047 15620047 C T ZNF286A Nonsense_Mutation p.R337* 0.32 TCGA-AZ-4315-01 17 15620117 15620117 A G ZNF286A Missense_Mutation p.D360G 0.23 tolerated(1) possibly_damaging(0.901) TCGA-AZ-4315-01 17 15620159 15620159 G T ZNF286A Missense_Mutation p.R374I 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-AZ-4315-01 17 15642137 15642137 G A TBC1D26 Missense_Mutation p.G164R 0.32 tolerated(0.09) benign(0.016) TCGA-AZ-4315-01 17 1630593 1630593 G T WDR81 Missense_Mutation p.E780D 0.35 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 17 16323460 16323460 C T TRPV2 Missense_Mutation p.R78W 0.18 tolerated(0.05) benign(0.055) TCGA-AZ-4315-01 17 1635692 1635692 C T WDR81 Missense_Mutation p.R1411C 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 17 16456448 16456448 A G ZNF287 Silent p.D336D 0.38 TCGA-AZ-4315-01 17 16612922 16612922 G T CCDC144A Missense_Mutation p.K517N 0.32 deleterious(0.01) possibly_damaging(0.788) TCGA-AZ-4315-01 17 16664776 16664776 G A CCDC144A Missense_Mutation p.R1137Q 0.18 tolerated(0.26) benign(0.001) TCGA-AZ-4315-01 17 16675971 16675971 C A CCDC144A Missense_Mutation p.S1400Y 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.608) TCGA-AZ-4315-01 17 16705792 16705792 C A CCDC144A 3'UTR 0.34 TCGA-AZ-4315-01 17 16843026 16843026 C T TNFRSF13B Silent p.A239A 0.22 TCGA-AZ-4315-01 17 17062239 17062239 G A MPRIP Missense_Mutation p.A657T 0.31 tolerated(0.21) benign(0.005) TCGA-AZ-4315-01 17 17398839 17398839 C T RASD1 Missense_Mutation p.R149H 0.55 tolerated(0.21) benign(0.075) TCGA-AZ-4315-01 17 17698063 17698063 G A RAI1 Missense_Mutation p.A601T 0.21 tolerated(0.11) possibly_damaging(0.825) TCGA-AZ-4315-01 17 17699701 17699701 C T RAI1 Missense_Mutation p.R1147W 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 17718242 17718242 G A SREBF1 Missense_Mutation p.L867F 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-AZ-4315-01 17 1792009 1792009 G A RPA1 Missense_Mutation p.R472H 0.36 deleterious(0) benign(0.396) TCGA-AZ-4315-01 17 17943186 17943186 G A GID4 Silent p.G136G 0.54 TCGA-AZ-4315-01 17 18022465 18022465 C T MYO15A Silent p.Y117Y 0.42 TCGA-AZ-4315-01 17 18041529 18041529 G A MYO15A Missense_Mutation p.R1659Q 0.42 unknown(0) TCGA-AZ-4315-01 17 18062622 18062622 G A MYO15A Missense_Mutation p.D3064N 0.37 unknown(0) TCGA-AZ-4315-01 17 18082121 18082121 G T MYO15A Missense_Mutation p.E3510D 0.24 unknown(0) TCGA-AZ-4315-01 17 18111642 18111642 G A ALKBH5 Missense_Mutation p.E373K 0.38 tolerated_low_confidence(0.09) benign(0.128) TCGA-AZ-4315-01 17 18333729 18333729 C T KRT17P2 RNA 0.62 TCGA-AZ-4315-01 17 18397850 18397850 G A LGALS9C 3'UTR 0.24 TCGA-AZ-4315-01 17 18565245 18565245 A T ZNF286B 3'UTR 0.35 TCGA-AZ-4315-01 17 18565527 18565527 C A ZNF286B Missense_Mutation p.R431I 0.34 deleterious(0) possibly_damaging(0.824) TCGA-AZ-4315-01 17 18565849 18565849 C A ZNF286B Nonsense_Mutation p.E324* 0.35 TCGA-AZ-4315-01 17 18682363 18682363 C T FBXW10 Missense_Mutation p.R971C 0.31 tolerated(0.22) benign(0.006) TCGA-AZ-4315-01 17 19186391 19186391 C A EPN2 5'UTR 0.32 TCGA-AZ-4315-01 17 19250580 19250580 A G B9D1 Splice_Site p.X135_splice 0.29 TCGA-AZ-4315-01 17 19319506 19319506 G T RNF112 3'UTR 0.40 TCGA-AZ-4315-01 17 19578915 19578915 T G ALDH3A2 3'UTR 0.27 TCGA-AZ-4315-01 17 19741840 19741840 C A ULK2 Missense_Mutation p.R254I 0.35 deleterious(0) benign(0.096) TCGA-AZ-4315-01 17 20107903 20107903 G T SPECC1 Missense_Mutation p.D181Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 20319939 20319939 C T SRP68P3 RNA 0.28 TCGA-AZ-4315-01 17 21319420 21319420 G A KCNJ12 Missense_Mutation p.D256N 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-AZ-4315-01 17 21319953 21319953 C A KCNJ12 Silent p.I433I 0.08 TCGA-AZ-4315-01 17 21320398 21320398 A T KCNJ12 3'UTR 0.36 TCGA-AZ-4315-01 17 21321419 21321419 T C KCNJ12 3'UTR 0.36 TCGA-AZ-4315-01 17 25931721 25931721 G A KSR1 Silent p.P412P 0.39 TCGA-AZ-4315-01 17 263747 263747 C T C17orf97 Silent p.A371A 0.30 TCGA-AZ-4315-01 17 264093 264093 A C C17orf97 3'UTR 0.53 TCGA-AZ-4315-01 17 26679964 26679964 C A POLDIP2 Missense_Mutation p.R198I 0.35 deleterious(0) possibly_damaging(0.693) TCGA-AZ-4315-01 17 26875075 26875075 G A UNC119 Missense_Mutation p.R127C 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-AZ-4315-01 17 26938623 26938623 G A SGK494 Missense_Mutation p.A258V 0.27 tolerated(0.1) benign(0.204) TCGA-AZ-4315-01 17 27050613 27050613 T C RPL23A Silent p.Y137Y 0.34 TCGA-AZ-4315-01 17 27277189 27277189 G A PHF12 Missense_Mutation p.R48W 0.41 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 17 27382876 27382876 G T PIPOX Missense_Mutation p.D338Y 0.32 deleterious(0.03) possibly_damaging(0.657) TCGA-AZ-4315-01 17 27383532 27383532 C T PIPOX 3'UTR 0.38 TCGA-AZ-4315-01 17 27425226 27425226 G A MYO18A Missense_Mutation p.S1296L 0.17 deleterious(0) possibly_damaging(0.698) TCGA-AZ-4315-01 17 27581490 27581490 A G CRYBA1 3'UTR 0.30 TCGA-AZ-4315-01 17 27943334 27943334 C A CORO6 Missense_Mutation p.R342I 0.32 deleterious(0.03) possibly_damaging(0.883) TCGA-AZ-4315-01 17 27959512 27959512 G A SSH2 Silent p.F873F 0.08 TCGA-AZ-4315-01 17 28386704 28386704 G T EFCAB5 Nonsense_Mutation p.E908* 0.26 TCGA-AZ-4315-01 17 28417610 28417610 G T EFCAB5 Missense_Mutation p.Q1285H 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 17 28511938 28511938 G A NSRP1 Missense_Mutation p.R308Q 0.37 tolerated(0.2) benign(0.001) TCGA-AZ-4315-01 17 28545862 28545862 C T SLC6A4 Missense_Mutation p.R144Q 0.50 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 17 28652034 28652034 G A TMIGD1 Missense_Mutation p.A147V 0.28 deleterious(0) benign(0.258) TCGA-AZ-4315-01 17 28656397 28656397 G T TMIGD1 Missense_Mutation p.S78Y 0.34 deleterious(0) possibly_damaging(0.887) TCGA-AZ-4315-01 17 28749974 28749974 A T CPD Silent p.G530G 0.08 TCGA-AZ-4315-01 17 28788230 28788230 A C CPD Missense_Mutation p.E1177D 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 17 2894626 2894626 G A RAP1GAP2 Silent p.E283E 0.30 TCGA-AZ-4315-01 17 29120666 29120666 C A CRLF3 Missense_Mutation p.D210Y 0.34 deleterious(0) possibly_damaging(0.742) TCGA-AZ-4315-01 17 2921371 2921371 G A RAP1GAP2 Missense_Mutation p.R504H 0.34 deleterious(0) probably_damaging(0.957) TCGA-AZ-4315-01 17 29226663 29226663 T G TEFM Intron 0.33 TCGA-AZ-4315-01 17 29261209 29261209 G A ADAP2 Missense_Mutation p.R135Q 0.34 deleterious(0.03) probably_damaging(0.994) TCGA-AZ-4315-01 17 29281502 29281502 G T ADAP2 Nonsense_Mutation p.E271* 0.23 TCGA-AZ-4315-01 17 29670049 29670049 C T NF1 Missense_Mutation p.A2362V 0.28 tolerated(0.27) benign(0.001) TCGA-AZ-4315-01 17 29677227 29677227 C T NF1 Nonsense_Mutation p.R2450* 0.33 TCGA-AZ-4315-01 17 29684326 29684326 C T NF1 Nonsense_Mutation p.R2637* 0.34 TCGA-AZ-4315-01 17 29687609 29687609 C A NF1 Silent p.L2755L 0.39 TCGA-AZ-4315-01 17 29850575 29850575 C T RAB11FIP4 Silent p.T325T 0.35 TCGA-AZ-4315-01 17 30219810 30219810 C T UTP6 Missense_Mutation p.D106N 0.34 deleterious(0) probably_damaging(0.913) TCGA-AZ-4315-01 17 30662437 30662437 T G C17orf75 Missense_Mutation p.K192Q 0.33 tolerated(0.5) benign(0.007) TCGA-AZ-4315-01 17 30806355 30806355 G A PSMD11 Silent p.Q333Q 0.30 TCGA-AZ-4315-01 17 30817693 30817693 A C CDK5R1 3'UTR 0.33 TCGA-AZ-4315-01 17 3195087 3195087 G A OR3A1 Nonsense_Mutation p.R264* 0.27 TCGA-AZ-4315-01 17 32598770 32598770 C T CCL7 Silent p.V83V 0.22 TCGA-AZ-4315-01 17 32906012 32906012 G A C17orf102 Silent p.G96G 0.36 TCGA-AZ-4315-01 17 32964756 32964756 C T TMEM132E Silent p.I820I 0.39 TCGA-AZ-4315-01 17 3324172 3324172 A G OR3A3 Missense_Mutation p.D104G 0.26 tolerated(0.63) benign(0) TCGA-AZ-4315-01 17 3324356 3324356 A G OR3A3 Silent p.A165A 0.08 TCGA-AZ-4315-01 17 33266667 33266667 C T CCT6B Missense_Mutation p.G345E 0.25 deleterious(0.01) probably_damaging(0.965) TCGA-AZ-4315-01 17 33321366 33321366 C T LIG3 Silent p.Y509Y 0.34 TCGA-AZ-4315-01 17 3349804 3349804 T A SPATA22 Missense_Mutation p.E255V 0.30 deleterious(0) possibly_damaging(0.53) TCGA-AZ-4315-01 17 33520867 33520867 G T SLC35G3 Missense_Mutation p.L154I 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 17 33585900 33585900 A G SLFN5 Missense_Mutation p.N64S 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-AZ-4315-01 17 33592112 33592112 C T SLFN5 Silent p.C627C 0.23 TCGA-AZ-4315-01 17 33771874 33771874 C T SLFN13 Missense_Mutation p.A276T 0.26 tolerated(0.32) benign(0.21) TCGA-AZ-4315-01 17 33801995 33801995 A C SLFN12L Missense_Mutation p.L572V 0.30 tolerated_low_confidence(0.12) unknown(0) TCGA-AZ-4315-01 17 3384996 3384996 T G ASPA Missense_Mutation p.I112M 0.30 tolerated(0.11) possibly_damaging(0.9) TCGA-AZ-4315-01 17 33879831 33879831 C T SLFN14 Missense_Mutation p.E608K 0.35 deleterious(0.02) benign(0.037) TCGA-AZ-4315-01 17 33932726 33932726 C A AP2B1 Missense_Mutation p.S49Y 0.34 deleterious(0) benign(0.041) TCGA-AZ-4315-01 17 33966614 33966614 G A AP2B1 Silent p.K424K 0.22 TCGA-AZ-4315-01 17 34037326 34037326 T C AP2B1 Silent p.C871C 0.36 TCGA-AZ-4315-01 17 34071801 34071801 C A GAS2L2 3'UTR 0.24 TCGA-AZ-4315-01 17 34185248 34185248 T C C17orf66 Missense_Mutation p.T370A 0.31 deleterious(0.04) probably_damaging(0.923) TCGA-AZ-4315-01 17 3421890 3421890 C T TRPV3 Missense_Mutation p.E689K 0.42 tolerated(1) benign(0.058) TCGA-AZ-4315-01 17 34416546 34416546 G A CCL3 Silent p.C57C 0.38 TCGA-AZ-4315-01 17 34852214 34852214 G A MYO19 Missense_Mutation p.R932W 0.35 deleterious(0.03) possibly_damaging(0.634) TCGA-AZ-4315-01 17 34859018 34859018 C A MYO19 Nonsense_Mutation p.E667* 0.36 TCGA-AZ-4315-01 17 34937864 34937864 G T GGNBP2 Nonsense_Mutation p.E371* 0.32 TCGA-AZ-4315-01 17 35634818 35634818 G T ACACA Missense_Mutation p.L231I 0.25 deleterious(0.04) probably_damaging(0.99) TCGA-AZ-4315-01 17 36361770 36361770 T C RP11-1407O15.2 Missense_Mutation p.D192G 0.16 TCGA-AZ-4315-01 17 36484859 36484859 C T GPR179 Silent p.Q1531Q 0.23 TCGA-AZ-4315-01 17 36485812 36485812 G A GPR179 Nonsense_Mutation p.Q1214* 0.28 TCGA-AZ-4315-01 17 36486307 36486307 C T GPR179 Missense_Mutation p.A1049T 0.28 tolerated(1) benign(0.001) TCGA-AZ-4315-01 17 36638312 36638312 G T ARHGAP23 Missense_Mutation p.K893N 0.30 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 17 36689635 36689635 G A SRCIN1 Missense_Mutation p.S1150L 0.42 tolerated(0.09) benign(0) TCGA-AZ-4315-01 17 36909582 36909582 G T PSMB3 Missense_Mutation p.Q61H 0.25 tolerated(0.22) probably_damaging(0.993) TCGA-AZ-4315-01 17 36936775 36936775 C T PIP4K2B Missense_Mutation p.R146H 0.45 tolerated(0.59) probably_damaging(0.932) TCGA-AZ-4315-01 17 37006382 37006382 G T RPL23 3'UTR 0.25 TCGA-AZ-4315-01 17 37188007 37188007 G T CTD-2206N4.2 5'Flank 0.46 TCGA-AZ-4315-01 17 37188435 37188435 G A LRRC37A11P RNA 0.37 TCGA-AZ-4315-01 17 37681028 37681028 C A CDK12 Missense_Mutation p.S1066Y 0.36 possibly_damaging(0.795) TCGA-AZ-4315-01 17 37901193 37901193 G T GRB7 Nonsense_Mutation p.E346* 0.13 TCGA-AZ-4315-01 17 38122034 38122034 C T GSDMA Missense_Mutation p.R32C 0.30 tolerated(0.1) benign(0.063) TCGA-AZ-4315-01 17 38131230 38131230 C T GSDMA Silent p.A328A 0.42 TCGA-AZ-4315-01 17 38183854 38183854 C A MED24 Intron 0.29 TCGA-AZ-4315-01 17 38209958 38209958 T G MED24 Intron 0.35 TCGA-AZ-4315-01 17 38520591 38520591 C A CTD-2267D19.3 3'UTR 0.36 TCGA-AZ-4315-01 17 38812794 38812794 G A KRT222 Nonsense_Mutation p.R250* 0.36 TCGA-AZ-4315-01 17 38812821 38812821 G A KRT222 Nonsense_Mutation p.R241* 0.30 TCGA-AZ-4315-01 17 38928282 38928282 G A KRT26 Silent p.F28F 0.41 TCGA-AZ-4315-01 17 38935957 38935957 C T KRT27 Missense_Mutation p.E281K 0.28 tolerated(0.22) probably_damaging(0.999) TCGA-AZ-4315-01 17 38990637 38990637 C A TMEM99 5'UTR 0.27 TCGA-AZ-4315-01 17 38992251 38992251 C T TMEM99 3'UTR 0.37 TCGA-AZ-4315-01 17 39036875 39036875 C T KRT20 Silent p.E207E 0.28 TCGA-AZ-4315-01 17 39115026 39115026 C T KRT39 Missense_Mutation p.A435T 0.34 tolerated(0.55) benign(0.026) TCGA-AZ-4315-01 17 39118725 39118725 C A KRT39 Nonsense_Mutation p.E267* 0.37 TCGA-AZ-4315-01 17 39119944 39119944 C T KRT39 Missense_Mutation p.D215N 0.35 deleterious(0.03) possibly_damaging(0.492) TCGA-AZ-4315-01 17 39165091 39165091 C A KRTAP3-1 Missense_Mutation p.G79V 0.28 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-AZ-4315-01 17 39241009 39241009 G A KRTAP4-7 3'UTR 0.31 TCGA-AZ-4315-01 17 39241380 39241380 T G KRTAP4-7 3'UTR 0.42 TCGA-AZ-4315-01 17 39296022 39296022 G T KRTAP4-6 3'UTR 0.32 TCGA-AZ-4315-01 17 39340739 39340739 C T KRTAP4-1 Missense_Mutation p.R123H 0.37 tolerated(0.11) unknown(0) TCGA-AZ-4315-01 17 39341228 39341228 G T KRTAP4-1 5'UTR 0.29 TCGA-AZ-4315-01 17 39534148 39534148 C A KRT34 3'UTR 0.39 TCGA-AZ-4315-01 17 39535306 39535306 C A KRT34 Missense_Mutation p.E375D 0.29 deleterious(0.02) benign(0.4) TCGA-AZ-4315-01 17 39552807 39552807 C T KRT31 Silent p.L151L 0.37 TCGA-AZ-4315-01 17 39567645 39567645 C T AC003958.2 RNA 0.33 TCGA-AZ-4315-01 17 39580622 39580622 C T KRT37 Missense_Mutation p.A52T 0.32 tolerated(0.15) benign(0.012) TCGA-AZ-4315-01 17 39623313 39623313 C T KRT32 Missense_Mutation p.E89K 0.40 deleterious(0.02) benign(0.353) TCGA-AZ-4315-01 17 3962535 3962535 G A ZZEF1 Nonsense_Mutation p.R1645* 0.22 TCGA-AZ-4315-01 17 39670278 39670278 G T KRT15 Silent p.I456I 0.19 TCGA-AZ-4315-01 17 39670283 39670283 C T KRT15 Missense_Mutation p.E455K 0.24 deleterious(0.03) benign(0.37) TCGA-AZ-4315-01 17 39671835 39671835 C T KRT15 Missense_Mutation p.R379Q 0.31 deleterious(0) probably_damaging(0.951) TCGA-AZ-4315-01 17 39786716 39786716 C A KRT42P RNA 0.24 TCGA-AZ-4315-01 17 4013116 4013116 C T ZZEF1 Missense_Mutation p.D370N 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 40152567 40152567 T C DNAJC7 Silent p.E33E 0.34 TCGA-AZ-4315-01 17 40257978 40257978 T C DHX58 Missense_Mutation p.T343A 0.27 tolerated(0.71) benign(0.002) TCGA-AZ-4315-01 17 40574935 40574935 T A PTRF Missense_Mutation p.I61F 0.35 deleterious(0.01) probably_damaging(0.923) TCGA-AZ-4315-01 17 40622192 40622192 G A ATP6V0A1 Missense_Mutation p.E127K 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 40646352 40646352 C T ATP6V0A1 Missense_Mutation p.A399V 0.37 deleterious(0) benign(0.4) TCGA-AZ-4315-01 17 40706743 40706743 G A HSD17B1 Silent p.E258E 0.52 TCGA-AZ-4315-01 17 40939428 40939428 C T WNK4 Missense_Mutation p.P537S 0.26 tolerated(0.14) unknown(0) TCGA-AZ-4315-01 17 40956259 40956259 G A CNTD1 Missense_Mutation p.A88T 0.36 tolerated(0.07) benign(0.007) TCGA-AZ-4315-01 17 41052908 41052908 G T G6PC Missense_Mutation p.M5I 0.38 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 17 41063332 41063332 C A G6PC Silent p.V321V 0.33 TCGA-AZ-4315-01 17 41179224 41179224 G A RND2 Missense_Mutation p.R72Q 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 17 41847040 41847040 G A DUSP3 Silent p.G165G 0.35 TCGA-AZ-4315-01 17 4192643 4192643 C T UBE2G1 Missense_Mutation p.G103D 0.33 deleterious(0.03) benign(0.15) TCGA-AZ-4315-01 17 41959840 41959840 C T MPP2 Missense_Mutation p.A165T 0.34 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 17 42085843 42085843 C A NAGS Missense_Mutation p.F493L 0.34 tolerated(0.09) probably_damaging(0.978) TCGA-AZ-4315-01 17 42427639 42427639 C T GRN Silent p.F131F 0.23 TCGA-AZ-4315-01 17 42477299 42477299 G A GPATCH8 Nonsense_Mutation p.R716* 0.30 TCGA-AZ-4315-01 17 42636361 42636361 C T FZD2 Silent p.F435F 0.37 TCGA-AZ-4315-01 17 42743910 42743910 A G C17orf104 Missense_Mutation p.N211D 0.19 tolerated(0.23) benign(0.108) TCGA-AZ-4315-01 17 42744592 42744592 T C C17orf104 Missense_Mutation p.V438A 0.34 tolerated(1) benign(0.006) TCGA-AZ-4315-01 17 42745468 42745468 C A C17orf104 Missense_Mutation p.S730Y 0.30 deleterious(0.02) probably_damaging(0.958) TCGA-AZ-4315-01 17 42855166 42855166 G A ADAM11 Missense_Mutation p.A669T 0.45 tolerated(0.12) benign(0.01) TCGA-AZ-4315-01 17 42985506 42985506 C T GFAP 3'Flank 0.28 TCGA-AZ-4315-01 17 43008979 43008979 C T KIF18B Missense_Mutation p.R503H 0.39 tolerated(0.66) benign(0.002) TCGA-AZ-4315-01 17 43173574 43173574 T C NMT1 Missense_Mutation p.Y173H 0.31 deleterious(0) probably_damaging(0.946) TCGA-AZ-4315-01 17 43247114 43247114 C T HEXIM2 Missense_Mutation p.R267C 0.20 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 43323651 43323651 C A FMNL1 Silent p.L1055L 0.09 TCGA-AZ-4315-01 17 43922433 43922433 A G SPPL2C Missense_Mutation p.H54R 0.35 tolerated(0.63) benign(0.001) TCGA-AZ-4315-01 17 43923397 43923397 C T SPPL2C Silent p.C375C 0.26 TCGA-AZ-4315-01 17 44055786 44055786 C T MAPT Missense_Mutation p.A118V 0.42 deleterious(0) possibly_damaging(0.694) TCGA-AZ-4315-01 17 44249279 44249279 T G KANSL1 Silent p.P77P 0.23 TCGA-AZ-4315-01 17 44408824 44408824 G T LRRC37A Missense_Mutation p.R1394I 0.24 tolerated(0.13) benign(0.314) TCGA-AZ-4315-01 17 44626686 44626686 G T LRRC37A2 Missense_Mutation p.R1394I 0.25 tolerated(0.13) probably_damaging(0.962) TCGA-AZ-4315-01 17 44950051 44950051 G A WNT9B Silent p.A82A 0.35 TCGA-AZ-4315-01 17 45216112 45216112 G A CDC27 Missense_Mutation p.S572L 0.28 deleterious(0) possibly_damaging(0.852) TCGA-AZ-4315-01 17 4535337 4535337 A G ALOX15 Silent p.S552S 0.34 TCGA-AZ-4315-01 17 45490164 45490164 G A EFCAB13 Silent p.L768L 0.32 TCGA-AZ-4315-01 17 45776803 45776803 A G TBKBP1 Missense_Mutation p.Q251R 0.15 tolerated(0.38) benign(0.01) TCGA-AZ-4315-01 17 45909528 45909528 C T LRRC46 Missense_Mutation p.R25W 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 17 4642629 4642629 T C CXCL16 Silent p.G21G 0.35 TCGA-AZ-4315-01 17 4646642 4646642 C T ZMYND15 Missense_Mutation p.R397W 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 17 46671031 46671031 A G HOXB5 Missense_Mutation p.F5S 0.38 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 17 46970778 46970778 A C ATP5G1 5'UTR 0.26 TCGA-AZ-4315-01 17 47246960 47246960 C A B4GALNT2 Missense_Mutation p.S524Y 0.47 tolerated(0.07) benign(0.101) TCGA-AZ-4315-01 17 47389375 47389375 C T ZNF652 Missense_Mutation p.E360K 0.31 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 17 47589406 47589406 C T NGFR Missense_Mutation p.S325L 0.32 tolerated(0.28) benign(0.001) TCGA-AZ-4315-01 17 47780298 47780298 T G SLC35B1 Missense_Mutation p.T280P 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 48190122 48190122 G T SAMD14 3'UTR 0.44 TCGA-AZ-4315-01 17 48193455 48193455 C A SAMD14 Splice_Site p.X167_splice 0.27 TCGA-AZ-4315-01 17 48272129 48272129 G A COL1A1 Nonsense_Mutation p.R472* 0.36 TCGA-AZ-4315-01 17 48435598 48435598 C A XYLT2 Missense_Mutation p.L658I 0.33 tolerated(1) benign(0.022) TCGA-AZ-4315-01 17 48453130 48453130 A C EME1 Missense_Mutation p.K187N 0.30 tolerated(0.14) benign(0.029) TCGA-AZ-4315-01 17 48594795 48594795 A G MYCBPAP Missense_Mutation p.K159E 0.31 tolerated(0.42) possibly_damaging(0.886) TCGA-AZ-4315-01 17 48649924 48649924 C T CACNA1G Silent p.S252S 0.17 TCGA-AZ-4315-01 17 48746264 48746264 C A ABCC3 Missense_Mutation p.P641T 0.14 tolerated(0.09) benign(0.088) TCGA-AZ-4315-01 17 48753087 48753087 C T ABCC3 Missense_Mutation p.A937V 0.29 tolerated(0.35) benign(0.004) TCGA-AZ-4315-01 17 48755242 48755242 C A ABCC3 Silent p.I1172I 0.32 TCGA-AZ-4315-01 17 4996337 4996337 A G ZFP3 3'UTR 0.37 TCGA-AZ-4315-01 17 4996751 4996751 A C ZFP3 3'UTR 0.42 TCGA-AZ-4315-01 17 5012886 5012886 G A ZNF232 Nonsense_Mutation p.R101* 0.32 TCGA-AZ-4315-01 17 5066284 5066284 A C USP6 Missense_Mutation p.Q1007H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-AZ-4315-01 17 5072276 5072276 C T USP6 Missense_Mutation p.S1148L 0.35 tolerated_low_confidence(0.16) benign(0.24) TCGA-AZ-4315-01 17 5084466 5084466 G A ZNF594 3'UTR 0.36 TCGA-AZ-4315-01 17 5086319 5086319 T G ZNF594 Missense_Mutation p.K411N 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 17 51900463 51900463 C T KIF2B Silent p.F23F 0.21 TCGA-AZ-4315-01 17 52990170 52990170 C A TOM1L1 Missense_Mutation p.F122L 0.24 tolerated(0.74) probably_damaging(0.956) TCGA-AZ-4315-01 17 53040314 53040314 C A COX11 Intron 0.29 TCGA-AZ-4315-01 17 53120673 53120673 T G STXBP4 Missense_Mutation p.V311G 0.37 deleterious(0) benign(0.288) TCGA-AZ-4315-01 17 53392779 53392779 C T HLF Missense_Mutation p.R215C 0.36 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 17 5372035 5372035 G A DHX33 Missense_Mutation p.R49W 0.39 deleterious(0.01) benign(0.109) TCGA-AZ-4315-01 17 5377949 5377949 C T DERL2 3'UTR 0.41 TCGA-AZ-4315-01 17 53844702 53844702 G T PCTP Nonsense_Mutation p.G50* 0.24 TCGA-AZ-4315-01 17 54403658 54403658 G A ANKFN1 Missense_Mutation p.E47K 0.32 tolerated_low_confidence(0.16) benign(0.037) TCGA-AZ-4315-01 17 5461822 5461822 T C NLRP1 Missense_Mutation p.T732A 0.25 tolerated(0.07) benign(0.222) TCGA-AZ-4315-01 17 54872450 54872450 T C C17orf67 Missense_Mutation p.D83G 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-AZ-4315-01 17 54939586 54939586 C T DGKE Nonsense_Mutation p.R500* 0.39 TCGA-AZ-4315-01 17 55123162 55123162 G A RNF126P1 RNA 0.43 TCGA-AZ-4315-01 17 56051604 56051604 T C VEZF1 3'UTR 0.53 TCGA-AZ-4315-01 17 56083147 56083147 A G SRSF1 Intron 0.30 TCGA-AZ-4315-01 17 56270823 56270823 C T EPX Missense_Mutation p.R88W 0.34 deleterious(0.02) benign(0.032) TCGA-AZ-4315-01 17 56277006 56277006 C T EPX Missense_Mutation p.A463V 0.34 deleterious(0) possibly_damaging(0.85) TCGA-AZ-4315-01 17 56332183 56332183 G A LPO Missense_Mutation p.A373T 0.38 deleterious(0.03) probably_damaging(0.983) TCGA-AZ-4315-01 17 56350132 56350132 C T MPO Missense_Mutation p.R590H 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 56429197 56429197 A G SUPT4H1 Intron 0.30 TCGA-AZ-4315-01 17 56540490 56540490 G A HSF5 Nonsense_Mutation p.Q399* 0.31 TCGA-AZ-4315-01 17 56581729 56581729 G A MTMR4 Missense_Mutation p.L474F 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 56663411 56663411 T C TEX14 Missense_Mutation p.T947A 0.31 tolerated(0.18) benign(0.003) TCGA-AZ-4315-01 17 56679863 56679863 C T TEX14 Silent p.P481P 0.31 TCGA-AZ-4315-01 17 56693650 56693650 G A TEX14 Missense_Mutation p.A224V 0.22 deleterious(0.03) benign(0.001) TCGA-AZ-4315-01 17 56729347 56729347 G A TEX14 Missense_Mutation p.R6C 0.30 deleterious(0.02) benign(0.006) TCGA-AZ-4315-01 17 56770031 56770031 A C RAD51C Missense_Mutation p.E9D 0.34 tolerated_low_confidence(0.1) benign(0.073) TCGA-AZ-4315-01 17 56811653 56811653 T C RAD51C 3'UTR 0.34 TCGA-AZ-4315-01 17 57057997 57057997 G T PPM1E Nonsense_Mutation p.E625* 0.37 TCGA-AZ-4315-01 17 57350186 57350186 C T GDPD1 Nonsense_Mutation p.R271* 0.35 TCGA-AZ-4315-01 17 57648001 57648001 C T DHX40 Missense_Mutation p.R135C 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 17 57759751 57759751 G T CLTC Nonsense_Mutation p.E1188* 0.33 TCGA-AZ-4315-01 17 57917539 57917539 C T VMP1 3'UTR 0.44 TCGA-AZ-4315-01 17 57990136 57990136 C T RPS6KB1 Missense_Mutation p.R95W 0.36 deleterious(0) probably_damaging(0.969) TCGA-AZ-4315-01 17 58013836 58013836 C A RPS6KB1 Missense_Mutation p.F351L 0.44 deleterious(0) possibly_damaging(0.837) TCGA-AZ-4315-01 17 58073599 58073599 A C RP11-178C3.2 RNA 0.46 TCGA-AZ-4315-01 17 58120873 58120873 C A HEATR6 3'UTR 0.32 TCGA-AZ-4315-01 17 58571971 58571971 G A APPBP2 Missense_Mutation p.L79F 0.44 deleterious(0.01) probably_damaging(0.927) TCGA-AZ-4315-01 17 59490523 59490523 T C C17orf82 3'UTR 0.39 TCGA-AZ-4315-01 17 59760784 59760784 T C BRIP1 Missense_Mutation p.D1208G 0.25 tolerated_low_confidence(0.64) benign(0.003) TCGA-AZ-4315-01 17 59763301 59763301 A C BRIP1 Missense_Mutation p.F934C 0.28 deleterious_low_confidence(0.01) benign(0.319) TCGA-AZ-4315-01 17 5984019 5984019 G A WSCD1 Missense_Mutation p.R14Q 0.35 deleterious(0.02) benign(0.357) TCGA-AZ-4315-01 17 5984390 5984390 G A WSCD1 Missense_Mutation p.A138T 0.30 tolerated(0.58) benign(0.003) TCGA-AZ-4315-01 17 59878685 59878685 C A BRIP1 Nonsense_Mutation p.E357* 0.31 TCGA-AZ-4315-01 17 59974890 59974890 G T INTS2 Nonsense_Mutation p.Y486* 0.41 TCGA-AZ-4315-01 17 60484017 60484017 T G EFCAB3 Missense_Mutation p.F274C 0.23 tolerated(0.12) probably_damaging(0.937) TCGA-AZ-4315-01 17 60678083 60678083 C T TLK2 Missense_Mutation p.S541L 0.35 deleterious(0.04) benign(0.033) TCGA-AZ-4315-01 17 60683536 60683536 G T TLK2 Missense_Mutation p.K635N 0.33 deleterious(0) probably_damaging(0.972) TCGA-AZ-4315-01 17 60689781 60689781 G A TLK2 Missense_Mutation p.R703Q 0.44 tolerated(0.05) benign(0.169) TCGA-AZ-4315-01 17 60744838 60744838 C T MRC2 Missense_Mutation p.A354V 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-AZ-4315-01 17 60766021 60766021 A C MRC2 Missense_Mutation p.K1074T 0.23 tolerated(0.61) benign(0.01) TCGA-AZ-4315-01 17 60813847 60813847 G T MARCH10 Missense_Mutation p.S461Y 0.37 deleterious(0) benign(0.423) TCGA-AZ-4315-01 17 60814414 60814414 C T MARCH10 Missense_Mutation p.R272Q 0.37 tolerated(0.08) benign(0.067) TCGA-AZ-4315-01 17 61278206 61278206 C T TANC2 Silent p.S145S 0.33 TCGA-AZ-4315-01 17 61483629 61483629 C T TANC2 Missense_Mutation p.L1120F 0.44 deleterious(0.01) probably_damaging(0.974) TCGA-AZ-4315-01 17 61568381 61568381 C T ACE Missense_Mutation p.S903L 0.25 tolerated(0.36) benign(0.009) TCGA-AZ-4315-01 17 61607792 61607792 C T KCNH6 Silent p.F188F 0.29 TCGA-AZ-4315-01 17 61759156 61759156 C T MAP3K3 Missense_Mutation p.P209L 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 17 61888507 61888507 C T DDX42 Nonsense_Mutation p.R458* 0.34 TCGA-AZ-4315-01 17 61898768 61898768 T G FTSJ3 Missense_Mutation p.E611A 0.18 tolerated(0.57) benign(0.006) TCGA-AZ-4315-01 17 61911350 61911350 C T SMARCD2 Missense_Mutation p.R367Q 0.26 tolerated(0.06) possibly_damaging(0.494) TCGA-AZ-4315-01 17 61959211 61959211 G A GH2 5'UTR 0.38 TCGA-AZ-4315-01 17 61988162 61988162 G A CSHL1 Missense_Mutation p.R45C 0.31 deleterious(0) possibly_damaging(0.888) TCGA-AZ-4315-01 17 61988540 61988540 C T CSHL1 Intron 0.28 TCGA-AZ-4315-01 17 62018260 62018260 C A SCN4A Missense_Mutation p.E1794D 0.27 tolerated_low_confidence(0.37) benign(0.013) TCGA-AZ-4315-01 17 62029154 62029154 C T SCN4A Missense_Mutation p.R828H 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-AZ-4315-01 17 62080221 62080221 G A ICAM2 Silent p.F238F 0.38 TCGA-AZ-4315-01 17 62080884 62080884 C T C17orf72 3'Flank 0.39 TCGA-AZ-4315-01 17 62238291 62238291 G A TEX2 Missense_Mutation p.L899F 0.23 deleterious(0) probably_damaging(0.984) TCGA-AZ-4315-01 17 62254779 62254779 G T TEX2 Missense_Mutation p.A833D 0.36 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 17 62474093 62474093 C A POLG2 Missense_Mutation p.M435I 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 6367550 6367550 T C PITPNM3 Missense_Mutation p.Y699C 0.30 deleterious(0) benign(0.172) TCGA-AZ-4315-01 17 64049925 64049925 C T CEP112 Missense_Mutation p.E383K 0.41 deleterious(0.03) possibly_damaging(0.487) TCGA-AZ-4315-01 17 64210592 64210592 C T APOH Missense_Mutation p.E321K 0.40 tolerated(0.14) benign(0.102) TCGA-AZ-4315-01 17 64210697 64210697 A T APOH Missense_Mutation p.F286I 0.29 tolerated(0.18) probably_damaging(0.935) TCGA-AZ-4315-01 17 64213004 64213004 T G APOH Missense_Mutation p.K229T 0.26 tolerated(0.37) benign(0.013) TCGA-AZ-4315-01 17 64873529 64873529 G A CACNG5 Missense_Mutation p.A27T 0.44 deleterious(0) possibly_damaging(0.902) TCGA-AZ-4315-01 17 65050168 65050168 G A CACNG1 Missense_Mutation p.E96K 0.29 tolerated(0.1) benign(0.251) TCGA-AZ-4315-01 17 65134097 65134097 C T HELZ Missense_Mutation p.R968Q 0.42 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 17 65175038 65175038 G A HELZ Silent p.L389L 0.47 TCGA-AZ-4315-01 17 65346353 65346353 C T PSMD12 Missense_Mutation p.E133K 0.22 deleterious(0.02) benign(0.386) TCGA-AZ-4315-01 17 6547770 6547770 C T MED31 3'UTR 0.36 TCGA-AZ-4315-01 17 65688810 65688810 C T PITPNC1 Missense_Mutation p.R269C 0.23 deleterious(0.03) possibly_damaging(0.857) TCGA-AZ-4315-01 17 65888128 65888128 A C BPTF Missense_Mutation p.K678T 0.42 benign(0.431) TCGA-AZ-4315-01 17 65890193 65890193 G T BPTF Nonsense_Mutation p.E819* 0.41 TCGA-AZ-4315-01 17 65900840 65900840 A C BPTF Missense_Mutation p.E899A 0.24 probably_damaging(0.999) TCGA-AZ-4315-01 17 6604416 6604416 T C SLC13A5 Missense_Mutation p.N249S 0.31 deleterious(0.04) benign(0.259) TCGA-AZ-4315-01 17 66267065 66267065 G A SLC16A6 Silent p.V412V 0.28 TCGA-AZ-4315-01 17 66352855 66352855 A G ARSG Missense_Mutation p.E205G 0.24 tolerated(0.07) benign(0.22) TCGA-AZ-4315-01 17 66864487 66864487 G A ABCA8 Silent p.S1534S 0.36 TCGA-AZ-4315-01 17 66883204 66883204 C T ABCA8 Missense_Mutation p.R1088H 0.40 tolerated(0.09) benign(0.258) TCGA-AZ-4315-01 17 66899485 66899485 G A ABCA8 Missense_Mutation p.R812C 0.30 deleterious(0) benign(0.246) TCGA-AZ-4315-01 17 66903889 66903889 T G ABCA8 Missense_Mutation p.K717T 0.41 tolerated(0.09) possibly_damaging(0.721) TCGA-AZ-4315-01 17 66933215 66933215 C A ABCA8 Nonsense_Mutation p.E115* 0.41 TCGA-AZ-4315-01 17 66936981 66936981 G T ABCA8 Silent p.S73S 0.27 TCGA-AZ-4315-01 17 67014706 67014706 C T ABCA9 Missense_Mutation p.G872D 0.30 deleterious(0.01) possibly_damaging(0.824) TCGA-AZ-4315-01 17 67016551 67016551 C A ABCA9 Nonsense_Mutation p.E860* 0.13 TCGA-AZ-4315-01 17 67040635 67040635 C A ABCA9 Intron 0.36 TCGA-AZ-4315-01 17 67075379 67075379 T C ABCA6 Missense_Mutation p.Y1575C 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 17 67103912 67103912 T C ABCA6 Missense_Mutation p.T772A 0.31 tolerated(0.78) benign(0.001) TCGA-AZ-4315-01 17 67244435 67244435 C T ABCA5 Missense_Mutation p.E1597K 0.29 deleterious(0) probably_damaging(0.927) TCGA-AZ-4315-01 17 67251934 67251934 G T ABCA5 Missense_Mutation p.L1306I 0.30 tolerated(0.52) benign(0.049) TCGA-AZ-4315-01 17 67310497 67310497 C A ABCA5 Missense_Mutation p.K20N 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 17 6733555 6733555 T G TEKT1 Missense_Mutation p.E47D 0.27 deleterious(0.03) benign(0.434) TCGA-AZ-4315-01 17 68129693 68129693 A C KCNJ16 3'UTR 0.28 TCGA-AZ-4315-01 17 681947 681947 G C GLOD4 Missense_Mutation p.A43G 0.17 deleterious(0) benign(0.005) TCGA-AZ-4315-01 17 6919857 6919857 T G C17orf49 Missense_Mutation p.S88A 0.23 tolerated(1) benign(0.373) TCGA-AZ-4315-01 17 695478 695478 G A RNMTL1 3'UTR 0.60 TCGA-AZ-4315-01 17 7005413 7005413 A G ASGR2 Missense_Mutation p.Y256H 0.39 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 17 704271 704271 T C NXN Missense_Mutation p.D409G 0.22 tolerated(0.1) probably_damaging(0.993) TCGA-AZ-4315-01 17 71420229 71420229 T C SDK2 Missense_Mutation p.Y529C 0.48 deleterious(0.01) probably_damaging(0.928) TCGA-AZ-4315-01 17 7229598 7229598 G A NEURL4 Silent p.C423C 0.39 TCGA-AZ-4315-01 17 72356122 72356122 G A BTBD17 Silent p.F116F 0.41 TCGA-AZ-4315-01 17 72367986 72367986 C T GPR142 Silent p.F212F 0.23 TCGA-AZ-4315-01 17 7240075 7240075 G A ACAP1 Missense_Mutation p.E8K 0.11 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 17 72519020 72519020 C T CD300LB Missense_Mutation p.V192I 0.35 tolerated(0.16) possibly_damaging(0.729) TCGA-AZ-4315-01 17 72589322 72589322 C T C17orf77 3'UTR 0.38 TCGA-AZ-4315-01 17 7259722 7259722 C A TMEM95 Missense_Mutation p.L149I 0.37 deleterious(0.01) possibly_damaging(0.567) TCGA-AZ-4315-01 17 7260010 7260010 T A TMEM95 3'UTR 0.24 TCGA-AZ-4315-01 17 72694551 72694551 G A CD300LF Silent p.A172A 0.29 TCGA-AZ-4315-01 17 72846775 72846775 G A GRIN2C Silent p.I415I 0.20 TCGA-AZ-4315-01 17 72850985 72850985 C T GRIN2C Missense_Mutation p.G83S 0.35 tolerated(0.21) benign(0.023) TCGA-AZ-4315-01 17 72861008 72861008 G A FDXR Nonsense_Mutation p.R262* 0.32 TCGA-AZ-4315-01 17 72862958 72862958 A G FDXR Missense_Mutation p.V116A 0.27 deleterious(0) benign(0.343) TCGA-AZ-4315-01 17 7289891 7289891 G A TNK1 Silent p.S383S 0.33 TCGA-AZ-4315-01 17 72943540 72943540 C A OTOP3 Silent p.I530I 0.41 TCGA-AZ-4315-01 17 73258737 73258737 A C MRPS7 Missense_Mutation p.K81N 0.31 tolerated(0.49) benign(0.009) TCGA-AZ-4315-01 17 7329071 7329071 G A C17orf74 Missense_Mutation p.D22N 0.39 tolerated(0.17) benign(0.034) TCGA-AZ-4315-01 17 7339937 7339937 T G TMEM102 Silent p.V213V 0.41 TCGA-AZ-4315-01 17 73501509 73501509 G A CASKIN2 Intron 0.21 TCGA-AZ-4315-01 17 7365474 7365474 C T ZBTB4 Missense_Mutation p.A943T 0.27 probably_damaging(0.985) TCGA-AZ-4315-01 17 73919716 73919716 G T FBF1 Missense_Mutation p.F310L 0.30 tolerated(0.07) benign(0.274) TCGA-AZ-4315-01 17 74099475 74099475 G A EXOC7 Silent p.S31S 0.28 TCGA-AZ-4315-01 17 74150318 74150318 G A RNF157 Intron 0.31 TCGA-AZ-4315-01 17 74300526 74300526 C T QRICH2 Silent p.A59A 0.33 TCGA-AZ-4315-01 17 74301000 74301000 T C QRICH2 Missense_Mutation p.E20G 0.28 tolerated(0.06) possibly_damaging(0.462) TCGA-AZ-4315-01 17 74307529 74307529 C A PRPSAP1 3'UTR 0.45 TCGA-AZ-4315-01 17 7460433 7460433 G A TNFSF12 Intron 0.55 TCGA-AZ-4315-01 17 7466478 7466478 C T SENP3 Missense_Mutation p.R29W 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AZ-4315-01 17 74729938 74729938 A G METTL23 3'UTR 0.27 TCGA-AZ-4315-01 17 75316333 75316333 G A SEPT9 Intron 0.22 TCGA-AZ-4315-01 17 7611521 7611521 A C EFNB3 Missense_Mutation p.N123T 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-AZ-4315-01 17 7623080 7623080 C T DNAH2 Nonsense_Mutation p.R10* 0.40 TCGA-AZ-4315-01 17 76236025 76236025 C A TMEM235 3'UTR 0.16 TCGA-AZ-4315-01 17 76392418 76392418 C T PGS1 Silent p.V121V 0.27 TCGA-AZ-4315-01 17 76492090 76492090 G A DNAH17 Missense_Mutation p.R1910W 0.31 probably_damaging(0.996) TCGA-AZ-4315-01 17 76535859 76535859 C T DNAH17 Missense_Mutation p.R879H 0.29 benign(0.003) TCGA-AZ-4315-01 17 76539984 76539984 G A DNAH17 Silent p.Y829Y 0.39 TCGA-AZ-4315-01 17 76558041 76558041 G T DNAH17 Missense_Mutation p.L531I 0.27 possibly_damaging(0.563) TCGA-AZ-4315-01 17 76563141 76563141 G T DNAH17 Silent p.V464V 0.29 TCGA-AZ-4315-01 17 76698642 76698642 T G CYTH1 Missense_Mutation p.K72T 0.32 deleterious(0) benign(0.036) TCGA-AZ-4315-01 17 7671234 7671234 A G DNAH2 Missense_Mutation p.Q1231R 0.30 possibly_damaging(0.61) TCGA-AZ-4315-01 17 7682725 7682725 C A DNAH2 Missense_Mutation p.F1902L 0.39 probably_damaging(0.999) TCGA-AZ-4315-01 17 76887220 76887220 T G DDC8 Missense_Mutation p.I456L 0.35 tolerated(0.21) benign(0.043) TCGA-AZ-4315-01 17 76967758 76967758 G A LGALS3BP Missense_Mutation p.S553L 0.33 deleterious(0) possibly_damaging(0.808) TCGA-AZ-4315-01 17 76989783 76989783 T C CANT1 Missense_Mutation p.N352S 0.26 tolerated(0.16) benign(0.006) TCGA-AZ-4315-01 17 7701475 7701475 T C DNAH2 Missense_Mutation p.I2744T 0.32 benign(0.058) TCGA-AZ-4315-01 17 7793078 7793078 G A CHD3 Missense_Mutation p.R125Q 0.41 benign(0.238) TCGA-AZ-4315-01 17 78024073 78024073 C T CCDC40 Missense_Mutation p.R384C 0.22 deleterious(0.01) benign(0.159) TCGA-AZ-4315-01 17 78063655 78063655 C T CCDC40 Missense_Mutation p.A935V 0.29 deleterious(0) benign(0.387) TCGA-AZ-4315-01 17 78093273 78093273 C T GAA 3'UTR 0.24 TCGA-AZ-4315-01 17 7830681 7830681 C T KCNAB3 Missense_Mutation p.E129K 0.28 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 17 78320271 78320271 G A RNF213 Silent p.P2712P 0.34 TCGA-AZ-4315-01 17 78363929 78363929 G A RNF213 Missense_Mutation p.E5135K 0.29 possibly_damaging(0.51) TCGA-AZ-4315-01 17 78865568 78865568 T G RPTOR Missense_Mutation p.F678V 0.26 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 17 7907424 7907424 C T GUCY2D Missense_Mutation p.R326C 0.59 deleterious(0.01) possibly_damaging(0.81) TCGA-AZ-4315-01 17 7911347 7911347 T A GUCY2D Nonsense_Mutation p.Y555* 0.22 TCGA-AZ-4315-01 17 79419805 79419805 G A RP11-1055B8.7 Missense_Mutation p.R1458H 0.44 probably_damaging(0.997) TCGA-AZ-4315-01 17 79495602 79495602 C T FSCN2 Silent p.G15G 0.32 TCGA-AZ-4315-01 17 79503659 79503659 G T FSCN2 Nonsense_Mutation p.E397* 0.27 TCGA-AZ-4315-01 17 79577279 79577279 C T NPLOC4 Missense_Mutation p.R131H 0.43 tolerated(0.43) benign(0.015) TCGA-AZ-4315-01 17 79826738 79826738 G A ARHGDIA 3'UTR 0.36 TCGA-AZ-4315-01 17 8014802 8014802 A G ALOXE3 Missense_Mutation p.Y410H 0.40 deleterious(0) probably_damaging(0.966) TCGA-AZ-4315-01 17 80210334 80210334 C T CSNK1D Missense_Mutation p.E238K 0.30 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-AZ-4315-01 17 8044575 8044575 C T PER1 Silent p.L1228L 0.24 TCGA-AZ-4315-01 17 8045991 8045991 C T PER1 Missense_Mutation p.G1079S 0.36 tolerated(1) probably_damaging(0.996) TCGA-AZ-4315-01 17 80543973 80543973 G A FOXK2 Silent p.A491A 0.25 TCGA-AZ-4315-01 17 80865659 80865659 G A TBCD Missense_Mutation p.E649K 0.77 tolerated(0.44) benign(0.158) TCGA-AZ-4315-01 17 8133971 8133971 T G CTC1 Splice_Site p.X890_splice 0.33 TCGA-AZ-4315-01 17 8139377 8139377 G A CTC1 Missense_Mutation p.S359L 0.25 tolerated(0.35) benign(0.017) TCGA-AZ-4315-01 17 8221919 8221919 G A ARHGEF15 Missense_Mutation p.R604H 0.38 deleterious(0.02) probably_damaging(0.974) TCGA-AZ-4315-01 17 8224244 8224244 G A ARHGEF15 Missense_Mutation p.R820H 0.44 deleterious(0.01) possibly_damaging(0.791) TCGA-AZ-4315-01 17 8280962 8280962 C T RPL26 Missense_Mutation p.E120K 0.36 deleterious(0.04) benign(0.425) TCGA-AZ-4315-01 17 8379185 8379185 G A MYH10 Silent p.S1987S 0.40 TCGA-AZ-4315-01 17 8656495 8656495 C T SPDYE4 Silent p.E225E 0.47 TCGA-AZ-4315-01 17 8739904 8739904 C T PIK3R6 Missense_Mutation p.E141K 0.33 deleterious(0) possibly_damaging(0.503) TCGA-AZ-4315-01 17 902783 902783 T G TIMM22 Missense_Mutation p.V156G 0.07 deleterious(0.01) benign(0.339) TCGA-AZ-4315-01 17 9083185 9083185 T C NTN1 Silent p.C423C 0.32 TCGA-AZ-4315-01 17 913998 913998 C T ABR Missense_Mutation p.R736Q 0.38 deleterious(0.01) possibly_damaging(0.639) TCGA-AZ-4315-01 17 9281920 9281920 G A STX8 Missense_Mutation p.R198C 0.32 tolerated(0.1) probably_damaging(0.972) TCGA-AZ-4315-01 17 9542014 9542014 G A WDR16 Missense_Mutation p.G521R 0.21 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 17 9631302 9631302 C T USP43 Silent p.G789G 0.24 TCGA-AZ-4315-01 17 9694481 9694481 C A DHRS7C Missense_Mutation p.V41L 0.28 tolerated(0.07) benign(0.116) TCGA-AZ-4315-01 17 9823007 9823007 C T GAS7 Missense_Mutation p.R385H 0.34 tolerated(0.19) benign(0.359) TCGA-AZ-4315-01 18 10471776 10471776 C T APCDD1 Silent p.G164G 0.37 TCGA-AZ-4315-01 18 10487862 10487862 T C APCDD1 Missense_Mutation p.S458P 0.31 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 18 10671631 10671631 G A PIEZO2 Nonsense_Mutation p.R2718* 0.30 TCGA-AZ-4315-01 18 11853220 11853220 C T CHMP1B 3'UTR 0.24 TCGA-AZ-4315-01 18 12699070 12699070 C T CEP76 Missense_Mutation p.R143Q 0.37 deleterious(0.02) possibly_damaging(0.873) TCGA-AZ-4315-01 18 12817277 12817277 A G PTPN2 Missense_Mutation p.F195L 0.32 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 18 12830941 12830941 C T PTPN2 Splice_Site p.X120_splice 0.21 TCGA-AZ-4315-01 18 13087587 13087587 G A CEP192 Missense_Mutation p.E1979K 0.21 tolerated(0.17) benign(0.407) TCGA-AZ-4315-01 18 14105731 14105731 G A ZNF519 Missense_Mutation p.R270C 0.18 tolerated(1) benign(0) TCGA-AZ-4315-01 18 14852182 14852182 A G ANKRD30B Silent p.E1294E 0.31 TCGA-AZ-4315-01 18 18547858 18547858 T G ROCK1 Missense_Mutation p.K1016T 0.28 tolerated(0.31) benign(0.024) TCGA-AZ-4315-01 18 18595406 18595406 C A ROCK1 Nonsense_Mutation p.E466* 0.36 TCGA-AZ-4315-01 18 19100770 19100770 T C GREB1L Missense_Mutation p.F1865S 0.33 deleterious(0) probably_damaging(0.913) TCGA-AZ-4315-01 18 19153336 19153336 T G ESCO1 Missense_Mutation p.K490T 0.31 deleterious(0) possibly_damaging(0.543) TCGA-AZ-4315-01 18 19359513 19359513 G A MIB1 Missense_Mutation p.E259K 0.38 deleterious(0.01) possibly_damaging(0.768) TCGA-AZ-4315-01 18 19408947 19408947 C A MIB1 Intron 0.40 TCGA-AZ-4315-01 18 19997765 19997765 C T CTAGE1 Missense_Mutation p.D4N 0.36 tolerated(0.15) benign(0.013) TCGA-AZ-4315-01 18 20606121 20606121 A G RBBP8 Missense_Mutation p.D871G 0.34 deleterious(0.02) benign(0.014) TCGA-AZ-4315-01 18 20833844 20833844 T C CABLES1 Silent p.L569L 0.30 TCGA-AZ-4315-01 18 20948712 20948712 T C TMEM241 Missense_Mutation p.D178G 0.31 deleterious(0) possibly_damaging(0.783) TCGA-AZ-4315-01 18 20951415 20951415 A C TMEM241 Missense_Mutation p.F152C 0.33 deleterious(0.01) probably_damaging(0.917) TCGA-AZ-4315-01 18 21111749 21111749 T G NPC1 3'UTR 0.35 TCGA-AZ-4315-01 18 21451418 21451418 C T LAMA3 Silent p.S1597S 0.31 TCGA-AZ-4315-01 18 21534507 21534507 C A LAMA3 Missense_Mutation p.F3299L 0.41 possibly_damaging(0.902) TCGA-AZ-4315-01 18 21723347 21723347 G T CABYR Missense_Mutation p.D57Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 18 21739761 21739761 A C CABYR Missense_Mutation p.R289S 0.39 deleterious(0) probably_damaging(0.978) TCGA-AZ-4315-01 18 21901653 21901653 C A OSBPL1A Intron 0.27 TCGA-AZ-4315-01 18 22023063 22023063 G A IMPACT Missense_Mutation p.D181N 0.20 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 18 224148 224148 G A THOC1 Missense_Mutation p.R414W 0.24 deleterious(0) benign(0.106) TCGA-AZ-4315-01 18 22805186 22805186 G A ZNF521 Missense_Mutation p.T899I 0.35 tolerated(0.08) benign(0.146) TCGA-AZ-4315-01 18 22806040 22806040 C A ZNF521 Missense_Mutation p.Q614H 0.30 tolerated(0.6) benign(0.007) TCGA-AZ-4315-01 18 22807395 22807395 G A ZNF521 Missense_Mutation p.R163C 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 18 23619401 23619401 C T SS18 Silent p.Q209Q 0.36 TCGA-AZ-4315-01 18 25565162 25565162 G T CDH2 Missense_Mutation p.L671I 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 18 25570150 25570150 G T CDH2 Silent p.I503I 0.33 TCGA-AZ-4315-01 18 25593814 25593814 C A CDH2 Missense_Mutation p.D78Y 0.30 deleterious(0.03) probably_damaging(0.914) TCGA-AZ-4315-01 18 2740726 2740726 A G SMCHD1 Silent p.G1180G 0.37 TCGA-AZ-4315-01 18 28611091 28611091 C A DSC3 Missense_Mutation p.D68Y 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 18 28662343 28662343 C T DSC2 Missense_Mutation p.R375Q 0.41 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 18 28909991 28909991 C A DSG1 Missense_Mutation p.S170Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 18 28914126 28914126 G A DSG1 Missense_Mutation p.M322I 0.31 deleterious(0.03) possibly_damaging(0.526) TCGA-AZ-4315-01 18 29036953 29036953 A G DSG3 Intron 0.26 TCGA-AZ-4315-01 18 2921588 2921588 C A LPIN2 Missense_Mutation p.K795N 0.38 deleterious(0) possibly_damaging(0.765) TCGA-AZ-4315-01 18 29225371 29225371 C T B4GALT6 Missense_Mutation p.D140N 0.33 tolerated(0.43) benign(0.02) TCGA-AZ-4315-01 18 29410915 29410915 G A TRAPPC8 Missense_Mutation p.L1371F 0.33 tolerated(0.11) benign(0.3) TCGA-AZ-4315-01 18 2946209 2946209 C T LPIN2 Intron 0.28 TCGA-AZ-4315-01 18 29489639 29489639 C T TRAPPC8 Missense_Mutation p.E286K 0.17 tolerated(0.72) benign(0.069) TCGA-AZ-4315-01 18 29497584 29497584 C T TRAPPC8 Silent p.S133S 0.37 TCGA-AZ-4315-01 18 29648292 29648292 G A RNF125 Missense_Mutation p.R215Q 0.28 tolerated(0.54) benign(0.002) TCGA-AZ-4315-01 18 29793131 29793131 G T MEP1B Missense_Mutation p.K396N 0.32 tolerated(0.42) benign(0.002) TCGA-AZ-4315-01 18 30093599 30093599 G T WBP11P1 RNA 0.36 TCGA-AZ-4315-01 18 3090778 3090778 C T MYOM1 Missense_Mutation p.R1296Q 0.31 tolerated(0.32) benign(0.017) TCGA-AZ-4315-01 18 31314356 31314356 C A ASXL3 Missense_Mutation p.F353L 0.37 probably_damaging(0.998) TCGA-AZ-4315-01 18 31326054 31326054 C T ASXL3 Missense_Mutation p.S2081L 0.39 benign(0.242) TCGA-AZ-4315-01 18 3135617 3135617 G A MYOM1 Missense_Mutation p.R713C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 18 31432728 31432728 G A NOL4 3'UTR 0.41 TCGA-AZ-4315-01 18 31432849 31432849 C T NOL4 Missense_Mutation p.R625Q 0.37 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 18 31537438 31537438 A G NOL4 Missense_Mutation p.V427A 0.32 deleterious(0.02) probably_damaging(0.979) TCGA-AZ-4315-01 18 31599560 31599560 A G NOL4 Missense_Mutation p.S260P 0.35 deleterious(0.03) probably_damaging(0.981) TCGA-AZ-4315-01 18 31803063 31803063 T G NOL4 Missense_Mutation p.K52T 0.27 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 18 319783 319783 G A COLEC12 3'UTR 0.31 TCGA-AZ-4315-01 18 32431839 32431839 C T DTNA Silent p.I406I 0.32 TCGA-AZ-4315-01 18 32446193 32446193 T G DTNA Intron 0.39 TCGA-AZ-4315-01 18 3272917 3272917 G T MYL12B Missense_Mutation p.K7N 0.33 tolerated(0.06) benign(0.12) TCGA-AZ-4315-01 18 3277992 3277992 A G MYL12B 3'UTR 0.28 TCGA-AZ-4315-01 18 3278151 3278151 C T MYL12B 3'UTR 0.46 TCGA-AZ-4315-01 18 32890350 32890350 A G ZNF271 RNA 0.33 TCGA-AZ-4315-01 18 32919927 32919927 C T ZNF24 Missense_Mutation p.R145Q 0.40 tolerated(0.64) benign(0.238) TCGA-AZ-4315-01 18 32920261 32920261 C A ZNF24 Missense_Mutation p.E118D 0.44 tolerated(0.08) possibly_damaging(0.523) TCGA-AZ-4315-01 18 33269235 33269235 A G GALNT1 Missense_Mutation p.N320S 0.31 deleterious(0) possibly_damaging(0.819) TCGA-AZ-4315-01 18 333084 333084 C A COLEC12 Nonsense_Mutation p.E626* 0.37 TCGA-AZ-4315-01 18 33613796 33613796 T G RPRD1A Missense_Mutation p.K52N 0.25 tolerated(0.09) benign(0.115) TCGA-AZ-4315-01 18 33783083 33783083 G T MOCOS Missense_Mutation p.D317Y 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 18 34752963 34752963 C T KIAA1328 Missense_Mutation p.A481V 0.34 tolerated(0.05) probably_damaging(0.994) TCGA-AZ-4315-01 18 34854368 34854368 C T CELF4 Missense_Mutation p.R236H 0.33 deleterious(0) probably_damaging(0.963) TCGA-AZ-4315-01 18 39647436 39647436 C A PIK3C3 Missense_Mutation p.L870I 0.25 tolerated(0.2) benign(0.024) TCGA-AZ-4315-01 18 40323355 40323355 G T RIT2 3'UTR 0.37 TCGA-AZ-4315-01 18 40323478 40323478 T C RIT2 Missense_Mutation p.K212E 0.29 deleterious_low_confidence(0.01) benign(0.292) TCGA-AZ-4315-01 18 40853589 40853589 C A SYT4 Nonsense_Mutation p.G269* 0.31 TCGA-AZ-4315-01 18 42530300 42530300 G A SETBP1 Missense_Mutation p.G332D 0.41 tolerated_low_confidence(0.25) benign(0.217) TCGA-AZ-4315-01 18 42643084 42643084 C T SETBP1 Silent p.I1404I 0.31 TCGA-AZ-4315-01 18 43207080 43207080 G A SLC14A2 Silent p.S163S 0.32 TCGA-AZ-4315-01 18 43310283 43310283 G A SLC14A1 Missense_Mutation p.A56T 0.18 tolerated(0.66) benign(0.015) TCGA-AZ-4315-01 18 43435635 43435635 C T EPG5 Missense_Mutation p.R2487Q 0.32 deleterious(0) benign(0.273) TCGA-AZ-4315-01 18 43529531 43529531 A G EPG5 Silent p.C472C 0.25 TCGA-AZ-4315-01 18 43667185 43667185 C T ATP5A1 Missense_Mutation p.R322H 0.33 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AZ-4315-01 18 44015304 44015304 G A RNF165 Missense_Mutation p.D144N 0.31 tolerated(0.16) benign(0.154) TCGA-AZ-4315-01 18 44057608 44057608 G A LOXHD1 Intron 0.42 TCGA-AZ-4315-01 18 44140091 44140091 C T LOXHD1 5'Flank 0.31 TCGA-AZ-4315-01 18 44181266 44181266 C T LOXHD1 Missense_Mutation p.E350K 0.39 deleterious(0.01) benign(0.008) TCGA-AZ-4315-01 18 44190882 44190882 G A LOXHD1 Missense_Mutation p.R206C 0.19 tolerated(0.18) probably_damaging(0.942) TCGA-AZ-4315-01 18 44236962 44236962 T C LOXHD1 Missense_Mutation p.D12G 0.31 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-AZ-4315-01 18 44260273 44260273 T C ST8SIA5 Missense_Mutation p.Y288C 0.36 probably_damaging(0.951) TCGA-AZ-4315-01 18 44560718 44560718 C T TCEB3B Silent p.K306K 0.42 TCGA-AZ-4315-01 18 44662797 44662797 C T HDHD2 Missense_Mutation p.R5H 0.13 tolerated(0.1) benign(0.005) TCGA-AZ-4315-01 18 46645263 46645263 G A DYM Nonsense_Mutation p.R533* 0.28 TCGA-AZ-4315-01 18 46906113 46906113 C T DYM Missense_Mutation p.R70Q 0.22 tolerated(0.41) benign(0.188) TCGA-AZ-4315-01 18 47014878 47014878 T G RPL17 3'UTR 0.37 TCGA-AZ-4315-01 18 47363955 47363955 G A MYO5B Silent p.N1690N 0.26 TCGA-AZ-4315-01 18 47463697 47463697 G T MYO5B Nonsense_Mutation p.S608* 0.18 TCGA-AZ-4315-01 18 47488716 47488716 C A MYO5B Missense_Mutation p.D489Y 0.31 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 18 47500923 47500923 C T MYO5B Silent p.E373E 0.35 TCGA-AZ-4315-01 18 47918626 47918626 T C SKA1 3'UTR 0.28 TCGA-AZ-4315-01 18 48439207 48439207 G T ME2 Missense_Mutation p.E93D 0.49 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 18 50450145 50450145 G A DCC Missense_Mutation p.D256N 0.27 tolerated(0.19) benign(0.014) TCGA-AZ-4315-01 18 50589679 50589679 G A DCC Silent p.P330P 0.27 TCGA-AZ-4315-01 18 51820154 51820154 G T POLI Missense_Mutation p.D514Y 0.24 deleterious(0.01) benign(0.438) TCGA-AZ-4315-01 18 51863496 51863496 G A STARD6 Missense_Mutation p.S89L 0.32 tolerated(0.17) benign(0.016) TCGA-AZ-4315-01 18 51886975 51886975 T C C18orf54 Silent p.C11C 0.27 TCGA-AZ-4315-01 18 52258497 52258497 A G DYNAP Missense_Mutation p.D21G 0.34 tolerated(0.11) possibly_damaging(0.908) TCGA-AZ-4315-01 18 52896184 52896184 G A TCF4 Silent p.L693L 0.25 TCGA-AZ-4315-01 18 5291963 5291963 G A ZBTB14 Missense_Mutation p.R82C 0.30 tolerated(0.12) probably_damaging(0.998) TCGA-AZ-4315-01 18 54281690 54281690 G A TXNL1 Missense_Mutation p.R234C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 18 54285248 54285248 T C TXNL1 Missense_Mutation p.D160G 0.41 deleterious(0) probably_damaging(0.963) TCGA-AZ-4315-01 18 55021743 55021743 T G ST8SIA3 Missense_Mutation p.F97C 0.35 benign(0.43) TCGA-AZ-4315-01 18 55024414 55024414 C T ST8SIA3 Silent p.F191F 0.36 TCGA-AZ-4315-01 18 55222169 55222169 C T FECH Missense_Mutation p.D280N 0.30 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 18 58039364 58039364 C A MC4R Missense_Mutation p.K73N 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 18 58039933 58039933 G A MC4R 5'UTR 0.32 TCGA-AZ-4315-01 18 60646022 60646022 C T PHLPP1 Silent p.S1504S 0.28 TCGA-AZ-4315-01 18 60795959 60795959 G A BCL2 Missense_Mutation p.R207W 0.29 deleterious(0.05) benign(0.003) TCGA-AZ-4315-01 18 6093469 6093469 G A L3MBTL4 Missense_Mutation p.R420C 0.30 deleterious(0.02) benign(0.007) TCGA-AZ-4315-01 18 60985267 60985267 C A BCL2 Intron 0.41 TCGA-AZ-4315-01 18 61226889 61226889 A C SERPINB12 Missense_Mutation p.T108P 0.29 tolerated(0.28) benign(0.013) TCGA-AZ-4315-01 18 61228356 61228356 G A SERPINB12 Silent p.T141T 0.43 TCGA-AZ-4315-01 18 61262398 61262398 G A SERPINB13 Missense_Mutation p.D251N 0.37 tolerated(0.08) probably_damaging(0.97) TCGA-AZ-4315-01 18 61463518 61463518 G A SERPINB7 Missense_Mutation p.E119K 0.31 tolerated(0.39) benign(0.062) TCGA-AZ-4315-01 18 627251 627251 C T CLUL1 Missense_Mutation p.S193F 0.34 tolerated(0.52) benign(0.016) TCGA-AZ-4315-01 18 627369 627369 C A CLUL1 Missense_Mutation p.F232L 0.33 tolerated(1) benign(0.001) TCGA-AZ-4315-01 18 63548147 63548147 C T CDH7 3'UTR 0.36 TCGA-AZ-4315-01 18 65178842 65178842 G A DSEL Missense_Mutation p.L1012F 0.30 deleterious(0) possibly_damaging(0.77) TCGA-AZ-4315-01 18 65179154 65179154 C T DSEL Missense_Mutation p.D908N 0.30 tolerated(0.13) benign(0.012) TCGA-AZ-4315-01 18 65179508 65179508 A C DSEL Missense_Mutation p.L790V 0.25 tolerated(0.05) probably_damaging(0.947) TCGA-AZ-4315-01 18 65179584 65179584 T G DSEL Silent p.A764A 0.27 TCGA-AZ-4315-01 18 65181066 65181066 C T DSEL Silent p.K270K 0.32 TCGA-AZ-4315-01 18 65181221 65181221 C T DSEL Missense_Mutation p.E219K 0.29 deleterious(0.02) possibly_damaging(0.69) TCGA-AZ-4315-01 18 65181271 65181271 C T DSEL Missense_Mutation p.R202Q 0.29 tolerated(0.25) probably_damaging(0.978) TCGA-AZ-4315-01 18 65181789 65181789 G T DSEL Missense_Mutation p.F29L 0.27 tolerated_low_confidence(0.74) benign(0) TCGA-AZ-4315-01 18 65181799 65181799 A G DSEL Missense_Mutation p.M26T 0.36 deleterious_low_confidence(0.02) benign(0.015) TCGA-AZ-4315-01 18 66513555 66513555 G A CCDC102B Missense_Mutation p.R278H 0.37 tolerated(0.16) benign(0.115) TCGA-AZ-4315-01 18 67425038 67425038 C A DOK6 Missense_Mutation p.S262Y 0.23 tolerated(0.09) possibly_damaging(0.492) TCGA-AZ-4315-01 18 67844076 67844076 C A RTTN Missense_Mutation p.E437D 0.24 tolerated(0.29) benign(0.006) TCGA-AZ-4315-01 18 67993486 67993486 G A SOCS6 Missense_Mutation p.D528N 0.37 deleterious(0.02) possibly_damaging(0.828) TCGA-AZ-4315-01 18 67993598 67993598 C A SOCS6 3'UTR 0.29 TCGA-AZ-4315-01 18 67996414 67996414 C A SOCS6 3'UTR 0.34 TCGA-AZ-4315-01 18 67997345 67997345 A C SOCS6 3'UTR 0.31 TCGA-AZ-4315-01 18 683295 683295 T C ENOSF1 Missense_Mutation p.E297G 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 18 6986175 6986175 G A LAMA1 Silent p.H1780H 0.32 TCGA-AZ-4315-01 18 7016617 7016617 G A LAMA1 Silent p.S954S 0.25 TCGA-AZ-4315-01 18 70423359 70423359 A C NETO1 Missense_Mutation p.F298V 0.28 deleterious(0.05) probably_damaging(0.998) TCGA-AZ-4315-01 18 72103932 72103932 C T FAM69C Missense_Mutation p.R355H 0.28 deleterious(0.02) benign(0.344) TCGA-AZ-4315-01 18 7231360 7231360 A C LRRC30 Missense_Mutation p.K75T 0.25 deleterious(0.02) probably_damaging(0.926) TCGA-AZ-4315-01 18 72776365 72776365 T G ZNF407 Missense_Mutation p.S2230A 0.50 deleterious(0.01) benign(0.098) TCGA-AZ-4315-01 18 73000406 73000406 C T TSHZ1 Missense_Mutation p.S970L 0.27 deleterious(0) benign(0.06) TCGA-AZ-4315-01 18 73001828 73001828 C T TSHZ1 3'UTR 0.38 TCGA-AZ-4315-01 18 77108158 77108158 C T ATP9B Silent p.F955F 0.35 TCGA-AZ-4315-01 18 77119387 77119387 C A ATP9B Missense_Mutation p.F979L 0.29 tolerated(0.08) benign(0.266) TCGA-AZ-4315-01 18 77246824 77246824 C A NFATC1 Missense_Mutation p.A877D 0.31 tolerated(0.22) benign(0.004) TCGA-AZ-4315-01 18 77474594 77474594 G T CTDP1 Missense_Mutation p.E378D 0.40 tolerated(0.45) benign(0.053) TCGA-AZ-4315-01 18 77659147 77659147 C T KCNG2 Silent p.C244C 0.27 TCGA-AZ-4315-01 18 77728180 77728180 A C HSBP1L1 Missense_Mutation p.Q70H 0.33 tolerated(0.07) benign(0.01) TCGA-AZ-4315-01 18 77894332 77894332 A G ADNP2 Missense_Mutation p.T346A 0.29 tolerated(0.56) benign(0.004) TCGA-AZ-4315-01 18 8784545 8784545 C A SOGA2 Missense_Mutation p.L479I 0.26 tolerated(1) benign(0.003) TCGA-AZ-4315-01 18 8831485 8831485 G A SOGA2 Intron 0.32 TCGA-AZ-4315-01 18 8831842 8831842 G A SOGA2 3'UTR 0.38 TCGA-AZ-4315-01 18 9257187 9257187 C T ANKRD12 Nonsense_Mutation p.R1308* 0.31 TCGA-AZ-4315-01 18 9396408 9396408 C T TWSG1 Silent p.I118I 0.10 TCGA-AZ-4315-01 18 9563388 9563388 G A PPP4R1 Silent p.S578S 0.26 TCGA-AZ-4315-01 18 9888158 9888158 T G TXNDC2 3'Flank 0.29 TCGA-AZ-4315-01 19 10071135 10071135 C T COL5A3 Silent p.T1730T 0.30 TCGA-AZ-4315-01 19 10071203 10071203 C T COL5A3 Missense_Mutation p.E1708K 0.24 unknown(0) TCGA-AZ-4315-01 19 10089257 10089257 C T COL5A3 Missense_Mutation p.G1004E 0.35 probably_damaging(0.931) TCGA-AZ-4315-01 19 10127857 10127857 T C RDH8 Silent p.C96C 0.28 TCGA-AZ-4315-01 19 10225917 10225917 G A P2RY11 3'UTR 0.22 TCGA-AZ-4315-01 19 10254637 10254637 C T DNMT1 Missense_Mutation p.R974H 0.32 deleterious(0.04) benign(0.022) TCGA-AZ-4315-01 19 10369092 10369092 G A MRPL4 Missense_Mutation p.D186N 0.26 tolerated(0.15) benign(0.316) TCGA-AZ-4315-01 19 1043140 1043140 T C ABCA7 Missense_Mutation p.V227A 0.25 tolerated(0.61) benign(0) TCGA-AZ-4315-01 19 10578042 10578042 C T PDE4A Silent p.F802F 0.21 TCGA-AZ-4315-01 19 10795404 10795404 G A ILF3 Intron 0.18 TCGA-AZ-4315-01 19 11332913 11332913 G T DOCK6 Missense_Mutation p.F1084L 0.14 tolerated(0.43) benign(0.109) TCGA-AZ-4315-01 19 11464489 11464489 G A CCDC159 Silent p.Q237Q 0.43 TCGA-AZ-4315-01 19 11508131 11508131 C T RGL3 Missense_Mutation p.R636Q 0.38 deleterious(0.01) unknown(0) TCGA-AZ-4315-01 19 11537002 11537002 C T CCDC151 Missense_Mutation p.E309K 0.52 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 19 11660141 11660141 G A CNN1 Missense_Mutation p.G169S 0.31 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 19 11687215 11687215 G A ACP5 Missense_Mutation p.A193V 0.17 deleterious(0.04) benign(0.152) TCGA-AZ-4315-01 19 11727866 11727866 G A ZNF627 Missense_Mutation p.R183Q 0.34 tolerated(1) probably_damaging(0.994) TCGA-AZ-4315-01 19 11762771 11762771 G T ZNF833P RNA 0.47 TCGA-AZ-4315-01 19 11942553 11942553 C T ZNF440 Nonsense_Mutation p.R188* 0.33 TCGA-AZ-4315-01 19 11942650 11942650 G A ZNF440 Missense_Mutation p.R220K 0.34 tolerated(0.11) benign(0.023) TCGA-AZ-4315-01 19 11942889 11942889 C T ZNF440 Missense_Mutation p.R300C 0.38 deleterious(0.04) probably_damaging(0.932) TCGA-AZ-4315-01 19 11943730 11943730 C T ZNF440 Missense_Mutation p.S580L 0.32 tolerated(0.12) benign(0) TCGA-AZ-4315-01 19 11944365 11944365 G T ZNF440 3'UTR 0.43 TCGA-AZ-4315-01 19 11979244 11979244 C T ZNF439 Nonsense_Mutation p.R454* 0.36 TCGA-AZ-4315-01 19 11979511 11979511 C T ZNF439 3'UTR 0.25 TCGA-AZ-4315-01 19 11979668 11979668 C A ZNF439 3'UTR 0.67 TCGA-AZ-4315-01 19 11979673 11979673 C A ZNF439 3'UTR 0.25 TCGA-AZ-4315-01 19 12014761 12014761 A C ZNF69 Missense_Mutation p.N64H 0.34 tolerated(0.06) possibly_damaging(0.792) TCGA-AZ-4315-01 19 12155113 12155113 T G ZNF878 Missense_Mutation p.E368A 0.31 deleterious(0.03) benign(0.038) TCGA-AZ-4315-01 19 12187409 12187409 G T ZNF844 Missense_Mutation p.D492Y 0.31 deleterious(0.02) possibly_damaging(0.586) TCGA-AZ-4315-01 19 12187589 12187589 A C ZNF844 Silent p.R552R 0.33 TCGA-AZ-4315-01 19 12298056 12298056 C T ZNF136 Missense_Mutation p.A288V 0.18 tolerated(0.08) probably_damaging(0.994) TCGA-AZ-4315-01 19 12298416 12298416 G A ZNF136 Missense_Mutation p.R408Q 0.26 tolerated(0.8) benign(0.262) TCGA-AZ-4315-01 19 12298512 12298512 G T ZNF136 Missense_Mutation p.R440I 0.22 deleterious(0.05) benign(0.108) TCGA-AZ-4315-01 19 12298802 12298802 T C ZNF136 Missense_Mutation p.W537R 0.24 deleterious_low_confidence(0) benign(0.007) TCGA-AZ-4315-01 19 12460276 12460276 G A ZNF442 3'UTR 0.30 TCGA-AZ-4315-01 19 12460983 12460983 G T ZNF442 Missense_Mutation p.F472L 0.27 tolerated(0.65) benign(0.003) TCGA-AZ-4315-01 19 12461545 12461545 C A ZNF442 Missense_Mutation p.R285I 0.37 tolerated(0.1) probably_damaging(0.959) TCGA-AZ-4315-01 19 12491577 12491577 T G CTD-3105H18.14 3'UTR 0.34 TCGA-AZ-4315-01 19 12502378 12502378 C A ZNF799 Missense_Mutation p.K278N 0.35 deleterious(0) benign(0.099) TCGA-AZ-4315-01 19 12575091 12575091 T G ZNF709 Missense_Mutation p.I549L 0.33 tolerated(0.73) benign(0.038) TCGA-AZ-4315-01 19 12575094 12575094 G A ZNF709 Nonsense_Mutation p.R548* 0.32 TCGA-AZ-4315-01 19 12575177 12575177 C T ZNF709 Missense_Mutation p.R520Q 0.22 tolerated(1) possibly_damaging(0.682) TCGA-AZ-4315-01 19 12576325 12576325 C A ZNF709 Missense_Mutation p.E137D 0.36 tolerated(0.1) possibly_damaging(0.57) TCGA-AZ-4315-01 19 12739966 12739966 A G ZNF791 Silent p.R541R 0.35 TCGA-AZ-4315-01 19 13015377 13015377 C T SYCE2 Missense_Mutation p.E79K 0.36 tolerated(0.08) benign(0.345) TCGA-AZ-4315-01 19 13264246 13264246 G T IER2 Missense_Mutation p.E82D 0.41 tolerated(0.58) benign(0.004) TCGA-AZ-4315-01 19 13368284 13368284 G A CACNA1A Silent p.Y1490Y 0.37 TCGA-AZ-4315-01 19 13418939 13418939 G A CACNA1A Silent p.G636G 0.29 TCGA-AZ-4315-01 19 1356366 1356366 T C MUM1 5'UTR 0.29 TCGA-AZ-4315-01 19 13985739 13985739 C T NANOS3 5'Flank 0.25 TCGA-AZ-4315-01 19 14164513 14164513 G A PALM3 Silent p.Y642Y 0.37 TCGA-AZ-4315-01 19 14512311 14512311 C A CD97 Silent p.I337I 0.33 TCGA-AZ-4315-01 19 14830011 14830011 G T ZNF333 Missense_Mutation p.E624D 0.20 tolerated(0.56) possibly_damaging(0.523) TCGA-AZ-4315-01 19 14887550 14887550 G T EMR2 Missense_Mutation p.L7I 0.34 tolerated(0.14) benign(0.001) TCGA-AZ-4315-01 19 14938283 14938283 C T OR7A5 Silent p.G257G 0.26 TCGA-AZ-4315-01 19 14938736 14938736 G A OR7A5 Silent p.L106L 0.30 TCGA-AZ-4315-01 19 14952489 14952489 G T OR7A10 Silent p.S67S 0.40 TCGA-AZ-4315-01 19 15132281 15132281 C T CCDC105 Missense_Mutation p.R331C 0.19 tolerated(0.1) probably_damaging(0.912) TCGA-AZ-4315-01 19 15226155 15226155 C T ILVBL Missense_Mutation p.D603N 0.38 tolerated(0.13) benign(0.009) TCGA-AZ-4315-01 19 15299887 15299887 C T NOTCH3 Missense_Mutation p.D431N 0.47 tolerated(0.16) probably_damaging(1) TCGA-AZ-4315-01 19 15367976 15367976 G A BRD4 Silent p.F450F 0.42 TCGA-AZ-4315-01 19 15562555 15562555 A C RASAL3 3'UTR 0.27 TCGA-AZ-4315-01 19 15572393 15572393 C T RASAL3 Silent p.E118E 0.34 TCGA-AZ-4315-01 19 15659953 15659953 C A CYP4F22 Silent p.I425I 0.35 TCGA-AZ-4315-01 19 15739190 15739190 C T CYP4F8 RNA 0.45 TCGA-AZ-4315-01 19 16000481 16000481 C T CYP4F2 Missense_Mutation p.A224T 0.28 tolerated(0.09) benign(0.19) TCGA-AZ-4315-01 19 16593330 16593330 G A CALR3 Silent p.T283T 0.40 TCGA-AZ-4315-01 19 16593346 16593346 C T CALR3 Missense_Mutation p.R278H 0.20 deleterious(0.03) benign(0.004) TCGA-AZ-4315-01 19 16687880 16687880 T C MED26 Missense_Mutation p.D254G 0.53 tolerated(0.46) benign(0.231) TCGA-AZ-4315-01 19 16999953 16999953 C T F2RL3 5'UTR 0.35 TCGA-AZ-4315-01 19 17025596 17025596 G A CPAMD8 Silent p.F1266F 0.34 TCGA-AZ-4315-01 19 17088219 17088219 C T CPAMD8 Missense_Mutation p.D620N 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 19 17091335 17091335 C T CPAMD8 Silent p.P566P 0.28 TCGA-AZ-4315-01 19 17132958 17132958 G A CPAMD8 Silent p.R89R 0.37 TCGA-AZ-4315-01 19 17303736 17303736 C T MYO9B Missense_Mutation p.A998V 0.42 tolerated(0.21) possibly_damaging(0.624) TCGA-AZ-4315-01 19 17373556 17373556 G A USHBP1 Silent p.F149F 0.34 TCGA-AZ-4315-01 19 17373681 17373681 T C USHBP1 Missense_Mutation p.T108A 0.35 tolerated(0.35) benign(0.004) TCGA-AZ-4315-01 19 1754774 1754774 C T ONECUT3 Silent p.S371S 0.41 TCGA-AZ-4315-01 19 17597535 17597535 G A SLC27A1 Missense_Mutation p.A111T 0.12 tolerated(0.11) benign(0.005) TCGA-AZ-4315-01 19 17657495 17657495 G A FAM129C Missense_Mutation p.E550K 0.21 tolerated(0.08) benign(0.046) TCGA-AZ-4315-01 19 17720823 17720823 G A UNC13A Silent p.S1579S 0.33 TCGA-AZ-4315-01 19 17758227 17758227 T C UNC13A Missense_Mutation p.M631V 0.24 deleterious(0.01) probably_damaging(0.958) TCGA-AZ-4315-01 19 17759346 17759346 G A UNC13A Silent p.C570C 0.28 TCGA-AZ-4315-01 19 17780380 17780380 G A UNC13A Missense_Mutation p.R126C 0.30 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-AZ-4315-01 19 17875213 17875213 C T FCHO1 Missense_Mutation p.A50V 0.33 tolerated(0.24) possibly_damaging(0.563) TCGA-AZ-4315-01 19 17937453 17937453 A G JAK3 3'UTR 0.25 TCGA-AZ-4315-01 19 17970757 17970757 G T RPL18A 5'UTR 0.52 TCGA-AZ-4315-01 19 1802062 1802062 C A ATP8B3 Intron 0.31 TCGA-AZ-4315-01 19 18092835 18092835 C T KCNN1 Silent p.F272F 0.25 TCGA-AZ-4315-01 19 18288555 18288555 T G IFI30 Missense_Mutation p.L224R 0.32 deleterious(0) possibly_damaging(0.871) TCGA-AZ-4315-01 19 18304786 18304786 G T MPV17L2 Missense_Mutation p.K100N 0.35 deleterious(0.01) possibly_damaging(0.675) TCGA-AZ-4315-01 19 18898390 18898390 C T COMP Missense_Mutation p.D349N 0.36 deleterious(0) possibly_damaging(0.463) TCGA-AZ-4315-01 19 19045211 19045211 C A HOMER3 Missense_Mutation p.E104D 0.36 tolerated(0.12) probably_damaging(0.943) TCGA-AZ-4315-01 19 19215734 19215734 G T SLC25A42 Missense_Mutation p.R67I 0.41 tolerated(0.07) possibly_damaging(0.739) TCGA-AZ-4315-01 19 19260215 19260215 G A MEF2B Silent p.F26F 0.28 TCGA-AZ-4315-01 19 19576237 19576237 A C GATAD2A Missense_Mutation p.K28T 0.38 deleterious(0.03) benign(0.379) TCGA-AZ-4315-01 19 19626571 19626571 G T NDUFA13 5'UTR 0.38 TCGA-AZ-4315-01 19 19626792 19626792 G A NDUFA13 5'UTR 0.33 TCGA-AZ-4315-01 19 19823207 19823207 G A ZNF14 Nonsense_Mutation p.R295* 0.48 TCGA-AZ-4315-01 19 20044893 20044893 G A ZNF93 Missense_Mutation p.A377T 0.28 deleterious(0.03) possibly_damaging(0.616) TCGA-AZ-4315-01 19 20228640 20228640 G T ZNF90 Missense_Mutation p.D93Y 0.33 deleterious(0.05) probably_damaging(0.976) TCGA-AZ-4315-01 19 20229964 20229964 C T ZNF90 Missense_Mutation p.A534V 0.36 deleterious(0.02) benign(0.109) TCGA-AZ-4315-01 19 20727169 20727169 G A ZNF737 3'UTR 0.30 TCGA-AZ-4315-01 19 20727829 20727829 C T ZNF737 Missense_Mutation p.E394K 0.26 deleterious(0.04) benign(0.05) TCGA-AZ-4315-01 19 20728626 20728626 C A ZNF737 Missense_Mutation p.R128I 0.30 tolerated(0.09) possibly_damaging(0.821) TCGA-AZ-4315-01 19 20736606 20736606 G T ZNF737 Missense_Mutation p.F13L 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-4315-01 19 20807551 20807551 A C ZNF626 Missense_Mutation p.F378V 0.36 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 19 20808018 20808018 A C ZNF626 Missense_Mutation p.I222S 0.35 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 19 20828025 20828025 A C ZNF626 Intron 0.46 TCGA-AZ-4315-01 19 2120980 2120980 G A AP3D1 Silent p.F454F 0.60 TCGA-AZ-4315-01 19 2121167 2121167 G A AP3D1 Silent p.F415F 0.27 TCGA-AZ-4315-01 19 21366281 21366281 G T ZNF431 Missense_Mutation p.R392I 0.30 tolerated(0.51) benign(0) TCGA-AZ-4315-01 19 21512035 21512035 C A ZNF708 5'UTR 0.27 TCGA-AZ-4315-01 19 21606735 21606735 G T ZNF493 Missense_Mutation p.R425I 0.28 tolerated(0.28) benign(0.005) TCGA-AZ-4315-01 19 21607537 21607537 A C ZNF493 Missense_Mutation p.K692N 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 19 21607876 21607876 A C ZNF493 3'UTR 0.37 TCGA-AZ-4315-01 19 21608010 21608010 G T ZNF493 3'UTR 0.38 TCGA-AZ-4315-01 19 2206778 2206778 A C DOT1L Missense_Mutation p.N280H 0.28 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 19 22154866 22154866 T C ZNF208 Silent p.K990K 0.31 TCGA-AZ-4315-01 19 22156310 22156310 G A ZNF208 Missense_Mutation p.S509F 0.31 tolerated(0.51) unknown(0) TCGA-AZ-4315-01 19 22362779 22362779 C A ZNF676 Missense_Mutation p.K580N 0.37 deleterious(0.02) probably_damaging(0.991) TCGA-AZ-4315-01 19 22363265 22363265 C A ZNF676 Missense_Mutation p.E418D 0.49 deleterious(0.04) probably_damaging(0.971) TCGA-AZ-4315-01 19 22574057 22574057 T C ZNF98 3'UTR 0.45 TCGA-AZ-4315-01 19 22575267 22575267 T G ZNF98 Missense_Mutation p.K257T 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 19 22575481 22575481 C A ZNF98 Nonsense_Mutation p.E186* 0.27 TCGA-AZ-4315-01 19 22575738 22575738 T C ZNF98 Missense_Mutation p.K100R 0.28 deleterious(0.04) benign(0) TCGA-AZ-4315-01 19 22846904 22846904 G T ZNF492 Nonsense_Mutation p.E145* 0.08 TCGA-AZ-4315-01 19 22939844 22939844 C T ZNF99 3'Flank 0.34 TCGA-AZ-4315-01 19 22940036 22940036 C A ZNF99 3'Flank 0.33 TCGA-AZ-4315-01 19 22940644 22940644 G T ZNF99 Missense_Mutation p.F689L 0.24 tolerated(0.63) benign(0.045) TCGA-AZ-4315-01 19 22940857 22940857 C A ZNF99 Missense_Mutation p.K618N 0.37 deleterious(0.02) possibly_damaging(0.637) TCGA-AZ-4315-01 19 23159437 23159437 G A ZNF728 Silent p.G234G 0.42 TCGA-AZ-4315-01 19 23406478 23406478 C A ZNF724P Missense_Mutation p.R190I 0.26 tolerated(0.21) benign(0.229) TCGA-AZ-4315-01 19 23837169 23837169 C T ZNF675 Missense_Mutation p.R189Q 0.31 tolerated(1) benign(0) TCGA-AZ-4315-01 19 23926603 23926603 A C ZNF681 Missense_Mutation p.I583M 0.42 deleterious(0.04) possibly_damaging(0.904) TCGA-AZ-4315-01 19 23927847 23927847 G T ZNF681 Missense_Mutation p.P169T 0.22 tolerated(0.28) benign(0) TCGA-AZ-4315-01 19 24309743 24309743 A G ZNF254 Missense_Mutation p.K314R 0.33 tolerated(1) benign(0.001) TCGA-AZ-4315-01 19 24310547 24310547 C A ZNF254 Missense_Mutation p.S582Y 0.27 deleterious(0.01) benign(0.045) TCGA-AZ-4315-01 19 2456698 2456698 G T LMNB2 Silent p.I78I 0.20 TCGA-AZ-4315-01 19 2759288 2759288 G A SGTA Missense_Mutation p.S235L 0.33 deleterious(0.02) benign(0.295) TCGA-AZ-4315-01 19 29698823 29698823 C T UQCRFS1 Missense_Mutation p.E153K 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 19 30477244 30477244 T C URI1 Missense_Mutation p.V96A 0.38 deleterious(0) probably_damaging(0.977) TCGA-AZ-4315-01 19 30934824 30934824 G A ZNF536 Missense_Mutation p.D119N 0.42 deleterious(0.04) probably_damaging(0.995) TCGA-AZ-4315-01 19 31039433 31039433 G T ZNF536 Missense_Mutation p.E969D 0.32 tolerated(0.23) benign(0.006) TCGA-AZ-4315-01 19 32844586 32844586 G T ZNF507 Nonsense_Mutation p.E284* 0.36 TCGA-AZ-4315-01 19 33167864 33167864 C T RGS9BP Missense_Mutation p.A232V 0.58 tolerated(0.64) unknown(0) TCGA-AZ-4315-01 19 33457328 33457328 C T CEP89 Silent p.P28P 0.36 TCGA-AZ-4315-01 19 33464351 33464351 C T C19orf40 Silent p.F42F 0.35 TCGA-AZ-4315-01 19 33467646 33467646 T C C19orf40 3'UTR 0.22 TCGA-AZ-4315-01 19 33663284 33663284 G T WDR88 Nonsense_Mutation p.E394* 0.34 TCGA-AZ-4315-01 19 33870403 33870403 A C CEBPG Missense_Mutation p.K86N 0.30 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 19 33870698 33870698 A C CEBPG 3'UTR 0.22 TCGA-AZ-4315-01 19 33871889 33871889 G A CEBPG 3'UTR 0.30 TCGA-AZ-4315-01 19 33878810 33878810 G A PEPD Missense_Mutation p.R444C 0.31 deleterious(0.01) benign(0.28) TCGA-AZ-4315-01 19 34900075 34900075 A C RP11-618P17.4 Missense_Mutation p.N145H 0.37 tolerated_low_confidence(0.07) benign(0.118) TCGA-AZ-4315-01 19 35225680 35225680 G A ZNF181 5'Flank 0.42 TCGA-AZ-4315-01 19 35232476 35232476 G T ZNF181 Missense_Mutation p.R397I 0.29 deleterious(0) benign(0.371) TCGA-AZ-4315-01 19 35424560 35424560 C T ZNF30 Silent p.I64I 0.26 TCGA-AZ-4315-01 19 35435769 35435769 C T ZNF30 3'UTR 0.31 TCGA-AZ-4315-01 19 35449147 35449147 C T ZNF792 Missense_Mutation p.E538K 0.33 deleterious(0.01) possibly_damaging(0.748) TCGA-AZ-4315-01 19 35449810 35449810 T G ZNF792 Missense_Mutation p.K317Q 0.36 deleterious(0) possibly_damaging(0.562) TCGA-AZ-4315-01 19 35622890 35622890 C T LGI4 Missense_Mutation p.R124H 0.37 tolerated(0.06) possibly_damaging(0.621) TCGA-AZ-4315-01 19 35753459 35753459 C T LSR Silent p.F262F 0.41 TCGA-AZ-4315-01 19 35786569 35786569 G A MAG Missense_Mutation p.E34K 0.35 tolerated(0.13) benign(0.195) TCGA-AZ-4315-01 19 35790470 35790470 C T MAG Silent p.I143I 0.23 TCGA-AZ-4315-01 19 35835971 35835971 G A CD22 Missense_Mutation p.S717N 0.29 deleterious(0.01) possibly_damaging(0.889) TCGA-AZ-4315-01 19 3585751 3585751 C T GIPC3 Silent p.I52I 0.27 TCGA-AZ-4315-01 19 3586844 3586844 C T GIPC3 Silent p.I148I 0.33 TCGA-AZ-4315-01 19 3600543 3600543 G A TBXA2R Silent p.F30F 0.23 TCGA-AZ-4315-01 19 36109925 36109925 C T HAUS5 Missense_Mutation p.R385W 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 19 36205652 36205652 G A ZBTB32 Missense_Mutation p.A42T 0.24 tolerated(0.09) possibly_damaging(0.857) TCGA-AZ-4315-01 19 36230209 36230209 A C IGFLR1 Missense_Mutation p.L347R 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 362307 362307 G A THEG Missense_Mutation p.R345C 0.44 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 19 36304090 36304090 T G PRODH2 Missense_Mutation p.N32H 0.23 tolerated_low_confidence(0.09) benign(0.002) TCGA-AZ-4315-01 19 36340014 36340014 C T NPHS1 Silent p.E292E 0.42 TCGA-AZ-4315-01 19 36362582 36362582 C T APLP1 Silent p.F202F 0.34 TCGA-AZ-4315-01 19 36365713 36365713 G A APLP1 Missense_Mutation p.R429H 0.47 tolerated(0.11) probably_damaging(0.995) TCGA-AZ-4315-01 19 36365747 36365747 G T APLP1 Missense_Mutation p.E440D 0.38 deleterious(0.05) probably_damaging(0.97) TCGA-AZ-4315-01 19 36501929 36501929 C T ALKBH6 Missense_Mutation p.R96Q 0.29 deleterious(0.04) possibly_damaging(0.768) TCGA-AZ-4315-01 19 36530320 36530320 G A THAP8 Missense_Mutation p.R193W 0.47 tolerated(0.13) possibly_damaging(0.482) TCGA-AZ-4315-01 19 36728316 36728316 G A ZNF146 3'UTR 0.39 TCGA-AZ-4315-01 19 36939729 36939729 C A ZNF566 3'UTR 0.48 TCGA-AZ-4315-01 19 36963842 36963842 T C ZNF566 Missense_Mutation p.D69G 0.21 tolerated(0.39) benign(0.001) TCGA-AZ-4315-01 19 37005547 37005547 T C ZNF260 Silent p.G198G 0.28 TCGA-AZ-4315-01 19 37117512 37117512 G T ZNF382 Missense_Mutation p.R238I 0.36 deleterious(0.01) benign(0.004) TCGA-AZ-4315-01 19 37118166 37118166 G T ZNF382 Missense_Mutation p.R456I 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 37129528 37129528 G T ZNF461 3'UTR 0.30 TCGA-AZ-4315-01 19 37130630 37130630 A C ZNF461 Missense_Mutation p.F206C 0.34 tolerated(0.19) possibly_damaging(0.52) TCGA-AZ-4315-01 19 37134730 37134730 G T ZNF461 Missense_Mutation p.F89L 0.45 tolerated(0.41) benign(0) TCGA-AZ-4315-01 19 37211370 37211370 A G ZNF567 Missense_Mutation p.T551A 0.37 deleterious(0.03) probably_damaging(0.93) TCGA-AZ-4315-01 19 37238940 37238940 C T ZNF850 Missense_Mutation p.R1001Q 0.30 deleterious(0.03) probably_damaging(0.966) TCGA-AZ-4315-01 19 37240660 37240660 T G ZNF850 Missense_Mutation p.K428Q 0.36 deleterious(0) probably_damaging(0.956) TCGA-AZ-4315-01 19 37310015 37310015 G A ZNF790 Nonsense_Mutation p.R411* 0.24 TCGA-AZ-4315-01 19 37314703 37314703 G T ZNF790 Intron 0.37 TCGA-AZ-4315-01 19 37367893 37367893 G T ZNF345 Missense_Mutation p.R54I 0.44 tolerated(0.05) benign(0.039) TCGA-AZ-4315-01 19 37440703 37440703 C A ZNF568 Silent p.S216S 0.30 TCGA-AZ-4315-01 19 37441688 37441688 C A ZNF568 Missense_Mutation p.L545I 0.28 deleterious(0.02) probably_damaging(0.967) TCGA-AZ-4315-01 19 37488027 37488027 C T ZNF568 Silent p.R414R 0.33 TCGA-AZ-4315-01 19 37619077 37619077 A G ZNF420 Missense_Mutation p.E395G 0.31 deleterious(0) possibly_damaging(0.758) TCGA-AZ-4315-01 19 37734282 37734282 C T ZNF383 Missense_Mutation p.R382C 0.24 deleterious(0.04) probably_damaging(0.934) TCGA-AZ-4315-01 19 3783901 3783901 C T MATK Missense_Mutation p.D166N 0.40 tolerated(0.2) possibly_damaging(0.512) TCGA-AZ-4315-01 19 3783931 3783931 C T MATK Missense_Mutation p.D156N 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-AZ-4315-01 19 37904309 37904309 T G ZNF569 Missense_Mutation p.K417N 0.17 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 19 37904943 37904943 C A ZNF569 Missense_Mutation p.R206I 0.29 deleterious(0.01) benign(0.279) TCGA-AZ-4315-01 19 38023362 38023362 C A ZNF793 Silent p.T40T 0.42 TCGA-AZ-4315-01 19 38028102 38028102 G A ZNF793 Missense_Mutation p.R181Q 0.39 tolerated(0.45) benign(0.005) TCGA-AZ-4315-01 19 38028316 38028316 G T ZNF793 Missense_Mutation p.E252D 0.34 deleterious(0.04) probably_damaging(0.977) TCGA-AZ-4315-01 19 38028543 38028543 T C ZNF793 Missense_Mutation p.V328A 0.27 tolerated(0.21) benign(0.325) TCGA-AZ-4315-01 19 38028601 38028601 C A ZNF793 Silent p.S347S 0.25 TCGA-AZ-4315-01 19 38056500 38056500 T G ZNF571 Missense_Mutation p.K277T 0.11 deleterious(0) probably_damaging(0.984) TCGA-AZ-4315-01 19 38091996 38091996 A G ZNF540 Silent p.R74R 0.46 TCGA-AZ-4315-01 19 38103616 38103616 C T ZNF540 Missense_Mutation p.R479C 0.13 tolerated(0.18) possibly_damaging(0.69) TCGA-AZ-4315-01 19 38125945 38125945 A G ZFP30 Silent p.C499C 0.34 TCGA-AZ-4315-01 19 38135536 38135536 C A ZFP30 Missense_Mutation p.E37D 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-AZ-4315-01 19 38161158 38161158 C T ZNF781 5'UTR 0.28 TCGA-AZ-4315-01 19 38161334 38161334 C T ZNF781 5'UTR 0.31 TCGA-AZ-4315-01 19 38190756 38190756 C A ZNF607 Missense_Mutation p.M92I 0.28 tolerated(0.51) benign(0.003) TCGA-AZ-4315-01 19 38230678 38230678 C A ZNF573 Missense_Mutation p.R238I 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 19 3823291 3823291 C T ZFR2 Missense_Mutation p.A442T 0.20 tolerated(0.19) benign(0.007) TCGA-AZ-4315-01 19 38375944 38375944 C T WDR87 Nonsense_Mutation p.W2750* 0.33 TCGA-AZ-4315-01 19 38379163 38379163 C A WDR87 Missense_Mutation p.E1677D 0.32 probably_damaging(0.991) TCGA-AZ-4315-01 19 38379712 38379712 C A WDR87 Missense_Mutation p.E1494D 0.31 possibly_damaging(0.549) TCGA-AZ-4315-01 19 38380099 38380099 C A WDR87 Silent p.V1365V 0.31 TCGA-AZ-4315-01 19 3852607 3852607 T C ZFR2 Intron 0.35 TCGA-AZ-4315-01 19 38897589 38897589 C T FAM98C Nonsense_Mutation p.R264* 0.31 TCGA-AZ-4315-01 19 38956988 38956988 G A RYR1 Missense_Mutation p.R1043H 0.47 probably_damaging(0.993) TCGA-AZ-4315-01 19 38959747 38959747 G A RYR1 Missense_Mutation p.E1175K 0.38 possibly_damaging(0.846) TCGA-AZ-4315-01 19 38983229 38983229 A C RYR1 Missense_Mutation p.K2076T 0.20 benign(0.094) TCGA-AZ-4315-01 19 38983244 38983244 A G RYR1 Missense_Mutation p.E2081G 0.53 benign(0.002) TCGA-AZ-4315-01 19 39083959 39083959 C A MAP4K1 Missense_Mutation p.D787Y 0.46 deleterious(0) possibly_damaging(0.88) TCGA-AZ-4315-01 19 39735453 39735453 G A IFNL3 Missense_Mutation p.A52V 0.13 deleterious(0.02) possibly_damaging(0.61) TCGA-AZ-4315-01 19 3976489 3976489 C T EEF2 3'UTR 0.48 TCGA-AZ-4315-01 19 39915888 39915888 G A PLEKHG2 Missense_Mutation p.G1372D 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.476) TCGA-AZ-4315-01 19 39998819 39998819 A C DLL3 3'UTR 0.30 TCGA-AZ-4315-01 19 40097944 40097944 G T LGALS13 Missense_Mutation p.D129Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 40174417 40174417 C T AC093063.3 5'Flank 0.41 TCGA-AZ-4315-01 19 40196521 40196521 C T LGALS14 5'UTR 0.24 TCGA-AZ-4315-01 19 40368736 40368736 C T FCGBP Silent p.T4204T 0.31 TCGA-AZ-4315-01 19 40520475 40520475 G T ZNF546 Missense_Mutation p.R433I 0.30 deleterious(0.04) possibly_damaging(0.671) TCGA-AZ-4315-01 19 40521033 40521033 G A ZNF546 Missense_Mutation p.R619Q 0.37 tolerated(0.17) possibly_damaging(0.553) TCGA-AZ-4315-01 19 40521614 40521614 G T ZNF546 Missense_Mutation p.A813S 0.23 tolerated(0.19) benign(0.117) TCGA-AZ-4315-01 19 40521728 40521728 G T ZNF546 3'UTR 0.25 TCGA-AZ-4315-01 19 40538386 40538386 G A ZNF780B 3'UTR 0.44 TCGA-AZ-4315-01 19 40540576 40540576 G A ZNF780B Silent p.C730C 0.39 TCGA-AZ-4315-01 19 40540779 40540779 G T ZNF780B Missense_Mutation p.H663N 0.32 deleterious(0) possibly_damaging(0.605) TCGA-AZ-4315-01 19 40729023 40729023 C T CNTD2 Missense_Mutation p.R287H 0.24 tolerated_low_confidence(0.14) benign(0.021) TCGA-AZ-4315-01 19 40744851 40744851 G A AKT2 Silent p.D223D 0.27 TCGA-AZ-4315-01 19 40928814 40928814 C T SERTAD1 Missense_Mutation p.E214K 0.27 deleterious(0.01) benign(0.296) TCGA-AZ-4315-01 19 41009973 41009973 G A SPTBN4 Silent p.Q533Q 0.29 TCGA-AZ-4315-01 19 41122794 41122794 G T LTBP4 Splice_Site p.X1005_splice 0.25 TCGA-AZ-4315-01 19 4117524 4117524 C T MAP2K2 Missense_Mutation p.E66K 0.34 deleterious(0.01) possibly_damaging(0.895) TCGA-AZ-4315-01 19 41223586 41223586 G A ITPKC Silent p.Q182Q 0.34 TCGA-AZ-4315-01 19 41281701 41281701 G A MIA Missense_Mutation p.D58N 0.48 deleterious(0.01) probably_damaging(0.991) TCGA-AZ-4315-01 19 41497314 41497314 G A CYP2B6 Missense_Mutation p.R35H 0.23 tolerated(0.14) possibly_damaging(0.765) TCGA-AZ-4315-01 19 41522588 41522588 G A CYP2B6 Silent p.A444A 0.33 TCGA-AZ-4315-01 19 41754431 41754431 G A AXL Missense_Mutation p.G517D 0.37 deleterious(0) probably_damaging(0.978) TCGA-AZ-4315-01 19 41828592 41828592 C T CCDC97 Missense_Mutation p.A335V 0.36 tolerated(0.14) unknown(0) TCGA-AZ-4315-01 19 419011 419011 C T SHC2 Missense_Mutation p.D556N 0.37 tolerated(0.85) benign(0.053) TCGA-AZ-4315-01 19 4217213 4217213 G T ANKRD24 Nonsense_Mutation p.G686* 0.29 TCGA-AZ-4315-01 19 4229610 4229610 G T EBI3 Missense_Mutation p.R21S 0.27 tolerated(0.32) benign(0.05) TCGA-AZ-4315-01 19 42406145 42406145 A G ARHGEF1 Missense_Mutation p.N474S 0.38 tolerated(0.07) benign(0.001) TCGA-AZ-4315-01 19 42473689 42473689 G A ATP1A3 Silent p.I875I 0.43 TCGA-AZ-4315-01 19 42492727 42492727 G A ATP1A3 Silent p.I11I 0.32 TCGA-AZ-4315-01 19 42546841 42546841 A C GRIK5 Missense_Mutation p.F446V 0.24 deleterious(0) possibly_damaging(0.527) TCGA-AZ-4315-01 19 42599946 42599946 C T POU2F2 Missense_Mutation p.D267N 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 42791848 42791848 A C CIC Missense_Mutation p.E245A 0.59 probably_damaging(0.996) TCGA-AZ-4315-01 19 42830350 42830350 T C MEGF8 5'UTR 0.32 TCGA-AZ-4315-01 19 42874425 42874425 C T MEGF8 Missense_Mutation p.R2240C 0.38 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 19 42931519 42931519 C A LIPE 5'UTR 0.31 TCGA-AZ-4315-01 19 42932793 42932793 T G CXCL17 3'UTR 0.58 TCGA-AZ-4315-01 19 4294785 4294785 G A TMIGD2 Silent p.I145I 0.34 TCGA-AZ-4315-01 19 43234056 43234056 G A PSG3 Nonsense_Mutation p.R288* 0.29 TCGA-AZ-4315-01 19 43348611 43348611 G A PSG10P RNA 0.31 TCGA-AZ-4315-01 19 43371954 43371954 G T PSG1 3'UTR 0.31 TCGA-AZ-4315-01 19 43372257 43372257 G A PSG1 Silent p.V413V 0.31 TCGA-AZ-4315-01 19 43376095 43376095 T C PSG1 Missense_Mutation p.Y178C 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 19 43411106 43411106 T C PSG6 Missense_Mutation p.E403G 0.33 tolerated(0.06) possibly_damaging(0.854) TCGA-AZ-4315-01 19 43411811 43411811 C A PSG6 Missense_Mutation p.R301I 0.31 tolerated(0.18) possibly_damaging(0.728) TCGA-AZ-4315-01 19 43414783 43414783 G A PSG6 Missense_Mutation p.R219W 0.38 tolerated(0.17) benign(0.022) TCGA-AZ-4315-01 19 43511949 43511949 A C PSG11 3'UTR 0.40 TCGA-AZ-4315-01 19 43529121 43529121 A G PSG11 Missense_Mutation p.V51A 0.41 deleterious(0.02) probably_damaging(0.99) TCGA-AZ-4315-01 19 43585332 43585332 T G PSG2 Missense_Mutation p.K44T 0.17 deleterious(0.05) probably_damaging(0.914) TCGA-AZ-4315-01 19 43672075 43672075 A G PSG5 Intron 0.24 TCGA-AZ-4315-01 19 43762277 43762277 G A PSG9 Intron 0.32 TCGA-AZ-4315-01 19 43772263 43772263 C T PSG9 Missense_Mutation p.E35K 0.33 deleterious(0.04) benign(0.013) TCGA-AZ-4315-01 19 4408962 4408962 G A CHAF1A Missense_Mutation p.D56N 0.34 tolerated(0.47) possibly_damaging(0.555) TCGA-AZ-4315-01 19 4409157 4409157 G A CHAF1A Missense_Mutation p.E121K 0.32 tolerated(0.14) benign(0.292) TCGA-AZ-4315-01 19 44118068 44118068 C T SRRM5 Missense_Mutation p.P599S 0.25 tolerated(0.24) benign(0.099) TCGA-AZ-4315-01 19 44352106 44352106 A C ZNF283 Missense_Mutation p.K451N 0.35 deleterious(0.01) possibly_damaging(0.625) TCGA-AZ-4315-01 19 44352809 44352809 G A ZNF283 3'UTR 0.31 TCGA-AZ-4315-01 19 44377600 44377600 G A ZNF404 Nonsense_Mutation p.R256* 0.27 TCGA-AZ-4315-01 19 44377826 44377826 G A ZNF404 Silent p.I180I 0.16 TCGA-AZ-4315-01 19 44384200 44384200 T C ZNF404 Missense_Mutation p.D33G 0.42 deleterious(0.02) probably_damaging(0.99) TCGA-AZ-4315-01 19 44470993 44470993 G A ZNF221 Missense_Mutation p.E447K 0.38 deleterious(0) probably_damaging(0.946) TCGA-AZ-4315-01 19 44515575 44515575 A C ZNF230 Missense_Mutation p.N462H 0.27 tolerated(0.21) possibly_damaging(0.805) TCGA-AZ-4315-01 19 44591326 44591326 A C ZNF284 Missense_Mutation p.K565N 0.39 tolerated(0.05) probably_damaging(0.997) TCGA-AZ-4315-01 19 44612040 44612040 G T ZNF224 Missense_Mutation p.R576I 0.31 tolerated(0.36) probably_damaging(0.928) TCGA-AZ-4315-01 19 44612400 44612400 G A ZNF224 Missense_Mutation p.R696Q 0.39 tolerated(1) benign(0) TCGA-AZ-4315-01 19 44661820 44661820 C T ZNF234 Missense_Mutation p.R551W 0.32 tolerated(0.16) probably_damaging(0.974) TCGA-AZ-4315-01 19 44674225 44674225 G T ZNF226 5'UTR 0.34 TCGA-AZ-4315-01 19 44680372 44680372 C T ZNF226 Silent p.G319G 0.29 TCGA-AZ-4315-01 19 44739247 44739247 G A ZNF227 Missense_Mutation p.E222K 0.34 tolerated(0.81) benign(0.003) TCGA-AZ-4315-01 19 44739436 44739436 C T ZNF227 Nonsense_Mutation p.R285* 0.37 TCGA-AZ-4315-01 19 44777752 44777752 C A ZNF233 Nonsense_Mutation p.C313* 0.30 TCGA-AZ-4315-01 19 44831529 44831529 C A ZNF112 3'UTR 0.25 TCGA-AZ-4315-01 19 44831770 44831770 C A ZNF112 Missense_Mutation p.R853I 0.36 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 19 44832796 44832796 T G ZNF112 Missense_Mutation p.K511T 0.33 tolerated(0.34) benign(0.026) TCGA-AZ-4315-01 19 44933964 44933964 C A ZNF229 Missense_Mutation p.R331I 0.42 tolerated(0.4) possibly_damaging(0.451) TCGA-AZ-4315-01 19 4498364 4498364 C T HDGFRP2 Silent p.V488V 0.29 TCGA-AZ-4315-01 19 45029258 45029258 C T CEACAM20 RNA 0.29 TCGA-AZ-4315-01 19 4510593 4510593 C T PLIN4 Missense_Mutation p.A1113T 0.30 deleterious(0.05) possibly_damaging(0.46) TCGA-AZ-4315-01 19 4511881 4511881 C A PLIN4 Missense_Mutation p.K683N 0.09 deleterious(0) possibly_damaging(0.889) TCGA-AZ-4315-01 19 45150790 45150790 C T PVR Silent p.F125F 0.35 TCGA-AZ-4315-01 19 45165082 45165082 C T PVR 3'UTR 0.45 TCGA-AZ-4315-01 19 45391808 45391808 G T PVRL2 3'UTR 0.29 TCGA-AZ-4315-01 19 45422601 45422601 A G APOC1 3'Flank 0.25 TCGA-AZ-4315-01 19 45684448 45684448 C A BLOC1S3 3'UTR 0.33 TCGA-AZ-4315-01 19 45821184 45821184 C T CKM Missense_Mutation p.E83K 0.42 tolerated(0.1) benign(0.018) TCGA-AZ-4315-01 19 45855889 45855889 G A ERCC2 Missense_Mutation p.R641W 0.22 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 46094059 46094059 T C GPR4 Missense_Mutation p.K356E 0.23 tolerated_low_confidence(0.15) benign(0.067) TCGA-AZ-4315-01 19 46319202 46319202 G A SYMPK Silent p.C1198C 0.36 TCGA-AZ-4315-01 19 46331129 46331129 G A SYMPK Missense_Mutation p.A678V 0.34 tolerated(0.14) benign(0.022) TCGA-AZ-4315-01 19 46526261 46526261 G T PGLYRP1 Missense_Mutation p.L7M 0.40 tolerated(0.18) benign(0.012) TCGA-AZ-4315-01 19 46627892 46627892 G A IGFL3 Silent p.C5C 0.31 TCGA-AZ-4315-01 19 46733397 46733397 C T IGFL1 Missense_Mutation p.L20F 0.26 tolerated(0.24) benign(0.059) TCGA-AZ-4315-01 19 46973369 46973369 C T PNMAL1 Silent p.A308A 0.32 TCGA-AZ-4315-01 19 46973596 46973596 G A PNMAL1 Missense_Mutation p.R233C 0.28 tolerated(0.09) possibly_damaging(0.835) TCGA-AZ-4315-01 19 46998272 46998272 G T PNMAL2 Missense_Mutation p.L151I 0.50 tolerated(0.19) benign(0.079) TCGA-AZ-4315-01 19 47177912 47177912 C T PRKD2 Silent p.V835V 0.30 TCGA-AZ-4315-01 19 47197382 47197382 C T PRKD2 Silent p.P442P 0.29 TCGA-AZ-4315-01 19 47342728 47342728 G A AP2S1 Silent p.F87F 0.27 TCGA-AZ-4315-01 19 47422937 47422937 T C ARHGAP35 Silent p.R335R 0.36 TCGA-AZ-4315-01 19 47425372 47425372 G A ARHGAP35 Missense_Mutation p.R1147H 0.34 deleterious(0.02) probably_damaging(0.951) TCGA-AZ-4315-01 19 47960515 47960515 C T SLC8A2 Missense_Mutation p.A338T 0.18 deleterious(0.01) possibly_damaging(0.536) TCGA-AZ-4315-01 19 48339527 48339527 G A CRX Missense_Mutation p.R43H 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 19 48543980 48543980 G A CABP5 Silent p.F40F 0.28 TCGA-AZ-4315-01 19 48636268 48636268 C T LIG1 Missense_Mutation p.E566K 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 19 48737748 48737748 A C CARD8 Missense_Mutation p.F88V 0.32 deleterious_low_confidence(0.02) benign(0.258) TCGA-AZ-4315-01 19 48789754 48789754 C T ZNF114 Silent p.S291S 0.44 TCGA-AZ-4315-01 19 48879376 48879376 G A SYNGR4 Missense_Mutation p.R169Q 0.37 tolerated(0.23) benign(0.025) TCGA-AZ-4315-01 19 49224161 49224161 G A RASIP1 Missense_Mutation p.A929V 0.25 tolerated(0.08) benign(0.395) TCGA-AZ-4315-01 19 49316393 49316393 G T HSD17B14 3'UTR 0.27 TCGA-AZ-4315-01 19 49362823 49362823 G A PLEKHA4 Nonsense_Mutation p.R199* 0.48 TCGA-AZ-4315-01 19 49618562 49618562 G A LIN7B Missense_Mutation p.E68K 0.41 deleterious(0.01) probably_damaging(0.958) TCGA-AZ-4315-01 19 49675265 49675265 G A TRPM4 Splice_Site p.X351_splice 0.29 TCGA-AZ-4315-01 19 49793927 49793927 A C SLC6A16 Missense_Mutation p.F626V 0.28 tolerated(0.09) possibly_damaging(0.577) TCGA-AZ-4315-01 19 49860542 49860542 T A TEAD2 Silent p.R109R 0.50 TCGA-AZ-4315-01 19 49901374 49901374 C A CCDC155 Silent p.I201I 0.32 TCGA-AZ-4315-01 19 49967724 49967724 C T ALDH16A1 Missense_Mutation p.S461L 0.30 deleterious(0) benign(0.042) TCGA-AZ-4315-01 19 50100802 50100802 G T PRR12 Missense_Mutation p.K1070N 0.38 probably_damaging(0.99) TCGA-AZ-4315-01 19 50193667 50193667 T C ADM5 Silent p.L127L 0.30 TCGA-AZ-4315-01 19 50208360 50208360 G A CPT1C Missense_Mutation p.E290K 0.31 deleterious(0.05) possibly_damaging(0.559) TCGA-AZ-4315-01 19 50321829 50321829 T G MED25 Missense_Mutation p.Y46D 0.36 deleterious(0) benign(0.099) TCGA-AZ-4315-01 19 50463885 50463885 C T SIGLEC11 Nonsense_Mutation p.W128* 0.29 TCGA-AZ-4315-01 19 50865560 50865560 G T NAPSA Missense_Mutation p.H32N 0.35 tolerated(0.08) benign(0) TCGA-AZ-4315-01 19 50881461 50881461 G A NR1H2 Silent p.P79P 0.28 TCGA-AZ-4315-01 19 50885838 50885838 G T NR1H2 Missense_Mutation p.E454D 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-AZ-4315-01 19 50940925 50940925 G A MYBPC2 Silent p.K174K 0.36 TCGA-AZ-4315-01 19 50957549 50957549 G A MYBPC2 Missense_Mutation p.R646H 0.40 deleterious(0.03) benign(0.103) TCGA-AZ-4315-01 19 50963428 50963428 A G MYBPC2 Missense_Mutation p.K975E 0.25 deleterious(0) possibly_damaging(0.698) TCGA-AZ-4315-01 19 50971068 50971068 G A FAM71E1 Silent p.F170F 0.17 TCGA-AZ-4315-01 19 51015539 51015539 T C ASPDH Missense_Mutation p.D221G 0.36 deleterious(0.01) possibly_damaging(0.796) TCGA-AZ-4315-01 19 51205755 51205755 C A SHANK1 Missense_Mutation p.E572D 0.23 possibly_damaging(0.874) TCGA-AZ-4315-01 19 51217155 51217155 C T SHANK1 Missense_Mutation p.R231Q 0.30 possibly_damaging(0.833) TCGA-AZ-4315-01 19 51217536 51217536 C A SHANK1 Missense_Mutation p.K181N 0.29 probably_damaging(0.958) TCGA-AZ-4315-01 19 51219710 51219710 G A SHANK1 Missense_Mutation p.A94V 0.46 possibly_damaging(0.88) TCGA-AZ-4315-01 19 51301334 51301334 G A C19orf48 3'UTR 0.27 TCGA-AZ-4315-01 19 51328828 51328828 G T KLK15 3'Flank 0.50 TCGA-AZ-4315-01 19 51413938 51413938 G A KLK4 Silent p.V19V 0.20 TCGA-AZ-4315-01 19 51462299 51462299 G A KLK6 3'UTR 0.36 TCGA-AZ-4315-01 19 51483667 51483667 G A KLK7 Missense_Mutation p.R100C 0.28 tolerated(0.1) probably_damaging(0.96) TCGA-AZ-4315-01 19 51527971 51527971 G A KLK11 Silent p.F72F 0.34 TCGA-AZ-4315-01 19 51628198 51628198 T C SIGLEC9 5'UTR 0.26 TCGA-AZ-4315-01 19 51671121 51671121 G A CTD-3187F8.14 Intron 0.45 TCGA-AZ-4315-01 19 51841307 51841307 G A VSIG10L Missense_Mutation p.R629W 0.37 deleterious(0) possibly_damaging(0.891) TCGA-AZ-4315-01 19 51845116 51845116 A C VSIG10L Silent p.V62V 0.39 TCGA-AZ-4315-01 19 51958890 51958890 G T SIGLEC8 Missense_Mutation p.S278Y 0.22 deleterious(0) probably_damaging(0.949) TCGA-AZ-4315-01 19 51983739 51983739 G A CEACAM18 Missense_Mutation p.A130T 0.38 tolerated(0.58) benign(0.035) TCGA-AZ-4315-01 19 52003395 52003395 T C SIGLEC12 Missense_Mutation p.D196G 0.35 tolerated(0.15) benign(0) TCGA-AZ-4315-01 19 52003583 52003583 C T SIGLEC12 Intron 0.23 TCGA-AZ-4315-01 19 52131180 52131180 G A SIGLEC5 Missense_Mutation p.R302C 0.28 deleterious(0) possibly_damaging(0.735) TCGA-AZ-4315-01 19 52327842 52327842 C A FPR3 Missense_Mutation p.L281I 0.30 tolerated(0.2) benign(0.005) TCGA-AZ-4315-01 19 52375722 52375722 C T ZNF577 3'UTR 0.50 TCGA-AZ-4315-01 19 52394796 52394796 C A ZNF649 Missense_Mutation p.R198I 0.31 tolerated(0.11) benign(0.444) TCGA-AZ-4315-01 19 52395022 52395022 T C ZNF649 Missense_Mutation p.R123G 0.37 deleterious(0.04) benign(0.001) TCGA-AZ-4315-01 19 52468777 52468777 C T ZNF350 Missense_Mutation p.R310Q 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 19 52472308 52472308 T C ZNF350 Missense_Mutation p.D31G 0.28 deleterious(0.02) benign(0.266) TCGA-AZ-4315-01 19 52496638 52496638 C T ZNF615 Missense_Mutation p.G575E 0.27 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 19 52536785 52536785 G T ZNF432 3'UTR 0.40 TCGA-AZ-4315-01 19 52537082 52537082 C T ZNF432 Missense_Mutation p.R617Q 0.31 deleterious(0.05) probably_damaging(0.996) TCGA-AZ-4315-01 19 52537665 52537665 G T ZNF432 Missense_Mutation p.H423N 0.36 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 19 52538174 52538174 C A ZNF432 Missense_Mutation p.R253I 0.32 deleterious(0) possibly_damaging(0.462) TCGA-AZ-4315-01 19 52570385 52570385 T C ZNF841 Silent p.Q250Q 0.28 TCGA-AZ-4315-01 19 52618543 52618543 C A ZNF616 Missense_Mutation p.R625I 0.41 tolerated(0.06) benign(0.152) TCGA-AZ-4315-01 19 52618669 52618669 C T ZNF616 Missense_Mutation p.G583D 0.29 tolerated(0.23) possibly_damaging(0.831) TCGA-AZ-4315-01 19 52620121 52620121 A C ZNF616 Missense_Mutation p.F99C 0.36 tolerated(0.46) benign(0.009) TCGA-AZ-4315-01 19 52658408 52658408 A C ZNF836 Missense_Mutation p.F843C 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-AZ-4315-01 19 52659012 52659012 C T ZNF836 Missense_Mutation p.E642K 0.30 tolerated(0.15) benign(0.23) TCGA-AZ-4315-01 19 52659617 52659617 T G ZNF836 Missense_Mutation p.K440T 0.40 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 19 52725470 52725470 A C PPP2R1A Missense_Mutation p.K546T 0.14 tolerated(0.43) benign(0.048) TCGA-AZ-4315-01 19 52825399 52825399 A C ZNF480 Missense_Mutation p.N299T 0.36 tolerated(0.44) benign(0.395) TCGA-AZ-4315-01 19 52826002 52826002 G A ZNF480 Missense_Mutation p.R500Q 0.15 tolerated(0.5) benign(0.049) TCGA-AZ-4315-01 19 52887318 52887318 G A ZNF880 Missense_Mutation p.R162K 0.30 tolerated(0.15) benign(0.015) TCGA-AZ-4315-01 19 52888428 52888428 A C ZNF880 Missense_Mutation p.K532T 0.33 tolerated(0.43) benign(0.028) TCGA-AZ-4315-01 19 52918755 52918755 A G ZNF528 Missense_Mutation p.E217G 0.35 tolerated(0.18) benign(0.186) TCGA-AZ-4315-01 19 52918985 52918985 G A ZNF528 Missense_Mutation p.E294K 0.41 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 19 52919692 52919692 C A ZNF528 Silent p.V529V 0.32 TCGA-AZ-4315-01 19 52920284 52920284 A C ZNF528 3'UTR 0.30 TCGA-AZ-4315-01 19 52942253 52942253 G A ZNF534 Missense_Mutation p.D527N 0.33 tolerated(0.09) benign(0) TCGA-AZ-4315-01 19 52954615 52954615 C T ZNF578 5'Flank 0.27 TCGA-AZ-4315-01 19 53015025 53015025 T G ZNF578 Missense_Mutation p.F464C 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 19 53057892 53057892 G A ZNF808 Missense_Mutation p.A575T 0.33 tolerated(0.15) benign(0.017) TCGA-AZ-4315-01 19 53058013 53058013 G T ZNF808 Missense_Mutation p.R615I 0.36 tolerated(0.08) benign(0.008) TCGA-AZ-4315-01 19 53058569 53058569 C T ZNF808 Silent p.F800F 0.27 TCGA-AZ-4315-01 19 53117285 53117285 T G ZNF83 Missense_Mutation p.K178T 0.11 deleterious(0.04) probably_damaging(0.993) TCGA-AZ-4315-01 19 53271011 53271011 G A ZNF600 5'UTR 0.25 TCGA-AZ-4315-01 19 53301963 53301963 C T ZNF28 3'UTR 0.17 TCGA-AZ-4315-01 19 53311356 53311356 C T ZNF28 Missense_Mutation p.E16K 0.25 deleterious(0.02) possibly_damaging(0.492) TCGA-AZ-4315-01 19 53343787 53343787 A C ZNF468 3'UTR 0.32 TCGA-AZ-4315-01 19 53383896 53383896 T C ZNF320 Missense_Mutation p.N495D 0.31 deleterious(0) benign(0.065) TCGA-AZ-4315-01 19 53383997 53383997 C T ZNF320 Missense_Mutation p.R461K 0.16 tolerated(0.19) benign(0.135) TCGA-AZ-4315-01 19 53384114 53384114 T C ZNF320 Missense_Mutation p.Y422C 0.36 deleterious(0) benign(0.035) TCGA-AZ-4315-01 19 53619631 53619631 T C ZNF415 Missense_Mutation p.N24S 0.35 deleterious(0.02) benign(0.003) TCGA-AZ-4315-01 19 53644299 53644299 C A ZNF347 Missense_Mutation p.E595D 0.36 deleterious(0.03) benign(0.064) TCGA-AZ-4315-01 19 53644548 53644548 C T ZNF347 Silent p.K512K 0.27 TCGA-AZ-4315-01 19 53644939 53644939 G A ZNF347 Missense_Mutation p.A382V 0.36 tolerated(0.45) benign(0.101) TCGA-AZ-4315-01 19 53644963 53644963 T C ZNF347 Missense_Mutation p.Y374C 0.34 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 19 53645669 53645669 T C ZNF347 Missense_Mutation p.T139A 0.29 tolerated(0.06) benign(0.002) TCGA-AZ-4315-01 19 53669074 53669074 G A ZNF665 Silent p.I223I 0.31 TCGA-AZ-4315-01 19 53740844 53740844 T C ZNF677 Missense_Mutation p.E379G 0.42 deleterious(0.01) benign(0.339) TCGA-AZ-4315-01 19 53854245 53854245 G A ZNF845 Missense_Mutation p.R106K 0.35 tolerated(0.14) benign(0.275) TCGA-AZ-4315-01 19 53857580 53857580 A C ZNF845 3'UTR 0.32 TCGA-AZ-4315-01 19 53884592 53884592 C T ZNF525 Missense_Mutation p.R254W 0.27 deleterious(0.03) benign(0.399) TCGA-AZ-4315-01 19 53886561 53886561 A G ZNF525 3'UTR 0.34 TCGA-AZ-4315-01 19 53886734 53886734 A C ZNF525 3'UTR 0.36 TCGA-AZ-4315-01 19 53912349 53912349 G T ZNF765 Missense_Mutation p.R514I 0.28 tolerated(0.17) benign(0.007) TCGA-AZ-4315-01 19 53912680 53912680 G T ZNF765 3'UTR 0.38 TCGA-AZ-4315-01 19 53952800 53952800 C A ZNF761 RNA 0.19 TCGA-AZ-4315-01 19 53961090 53961090 T G ZNF761 RNA 0.42 TCGA-AZ-4315-01 19 53994485 53994485 C A ZNF813 Silent p.G333G 0.32 TCGA-AZ-4315-01 19 53995704 53995704 G T ZNF813 3'UTR 0.23 TCGA-AZ-4315-01 19 54080808 54080808 T C ZNF331 Missense_Mutation p.C332R 0.30 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 19 54175266 54175266 G A MIR1323 RNA 0.21 TCGA-AZ-4315-01 19 54177503 54177503 T G MIR498 RNA 0.35 TCGA-AZ-4315-01 19 54188261 54188261 G A MIR519C 5'Flank 0.31 TCGA-AZ-4315-01 19 54206063 54206063 T C MIR518B RNA 0.25 TCGA-AZ-4315-01 19 54255691 54255691 C T MIR519A1 RNA 0.37 TCGA-AZ-4315-01 19 54261542 54261542 C T MIR1283-2 RNA 0.37 TCGA-AZ-4315-01 19 54377181 54377181 C T MYADM Missense_Mutation p.S133L 0.27 tolerated(0.63) benign(0.16) TCGA-AZ-4315-01 19 54387447 54387447 G A PRKCG Missense_Mutation p.E79K 0.29 tolerated(0.08) possibly_damaging(0.88) TCGA-AZ-4315-01 19 54481409 54481409 G T CACNG8 Missense_Mutation p.R98I 0.31 deleterious(0) probably_damaging(0.921) TCGA-AZ-4315-01 19 54544289 54544289 C T VSTM1 Missense_Mutation p.A213T 0.42 tolerated(0.18) benign(0.013) TCGA-AZ-4315-01 19 54618732 54618732 C T TFPT 5'UTR 0.25 TCGA-AZ-4315-01 19 54803527 54803527 G T LILRA3 Silent p.I99I 0.35 TCGA-AZ-4315-01 19 54823321 54823321 C A LILRA5 Missense_Mutation p.Q74H 0.39 deleterious(0.01) benign(0.376) TCGA-AZ-4315-01 19 54933460 54933460 G A TTYH1 Missense_Mutation p.A172T 0.46 tolerated(0.36) benign(0.018) TCGA-AZ-4315-01 19 54969677 54969677 C T LENG8 Silent p.V739V 0.27 TCGA-AZ-4315-01 19 55054856 55054856 G T KIR3DX1 3'UTR 0.38 TCGA-AZ-4315-01 19 55221373 55221373 G T AC098784.2 3'Flank 0.37 TCGA-AZ-4315-01 19 55222039 55222039 G T AC098784.2 3'Flank 0.27 TCGA-AZ-4315-01 19 55295208 55295208 C T KIR2DL1 Silent p.I330I 0.26 TCGA-AZ-4315-01 19 55327981 55327981 C T KIR3DL1 Missense_Mutation p.A9V 0.39 tolerated(1) benign(0.041) TCGA-AZ-4315-01 19 55396831 55396831 C T FCAR Silent p.F85F 0.21 TCGA-AZ-4315-01 19 55438997 55438997 C A NLRP7 Missense_Mutation p.R986I 0.37 deleterious(0.04) benign(0.411) TCGA-AZ-4315-01 19 55445927 55445927 G A NLRP7 Missense_Mutation p.L801F 0.35 tolerated(0.14) possibly_damaging(0.861) TCGA-AZ-4315-01 19 55449588 55449588 C T NLRP7 Silent p.P651P 0.29 TCGA-AZ-4315-01 19 55451284 55451284 C T NLRP7 Silent p.T301T 0.26 TCGA-AZ-4315-01 19 55451763 55451763 C A NLRP7 Missense_Mutation p.D142Y 0.30 tolerated(0.3) possibly_damaging(0.707) TCGA-AZ-4315-01 19 55505722 55505722 C A NLRP2 Missense_Mutation p.L932M 0.32 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 19 55539020 55539020 C T GP6 Missense_Mutation p.R179Q 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.755) TCGA-AZ-4315-01 19 55558793 55558793 G A RDH13 Missense_Mutation p.T241M 0.29 tolerated(0.58) probably_damaging(0.991) TCGA-AZ-4315-01 19 55671294 55671294 C T DNAAF3 Missense_Mutation p.R446Q 0.30 tolerated(0.33) benign(0.22) TCGA-AZ-4315-01 19 55693153 55693153 G A PTPRH Missense_Mutation p.A1106V 0.37 benign(0.313) TCGA-AZ-4315-01 19 55716737 55716737 C A PTPRH Missense_Mutation p.K192N 0.29 unknown(0) TCGA-AZ-4315-01 19 55720872 55720872 G T PTPRH 5'Flank 0.27 TCGA-AZ-4315-01 19 5598855 5598855 C T SAFB2 Silent p.S577S 0.29 TCGA-AZ-4315-01 19 56103658 56103658 T C FIZ1 3'UTR 0.35 TCGA-AZ-4315-01 19 56114192 56114192 G A ZNF524 Silent p.P238P 0.21 TCGA-AZ-4315-01 19 56156657 56156657 C T ZNF581 3'UTR 0.29 TCGA-AZ-4315-01 19 56274033 56274033 G A RFPL4A Missense_Mutation p.R119Q 0.21 tolerated(0.24) benign(0.025) TCGA-AZ-4315-01 19 56329312 56329312 G A NLRP11 Missense_Mutation p.R77C 0.22 deleterious(0.04) possibly_damaging(0.761) TCGA-AZ-4315-01 19 56407390 56407390 T G NLRP13 Missense_Mutation p.N1018T 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 56407479 56407479 C T NLRP13 Silent p.A988A 0.35 TCGA-AZ-4315-01 19 56423388 56423388 C A NLRP13 Nonsense_Mutation p.E599* 0.37 TCGA-AZ-4315-01 19 56424579 56424579 C T NLRP13 Missense_Mutation p.V202I 0.30 tolerated(1) benign(0.001) TCGA-AZ-4315-01 19 56481919 56481919 C T NLRP8 Silent p.D797D 0.32 TCGA-AZ-4315-01 19 56539700 56539700 C T NLRP5 Missense_Mutation p.R701C 0.31 tolerated(0.19) benign(0.006) TCGA-AZ-4315-01 19 56688477 56688477 G A GALP 5'UTR 0.30 TCGA-AZ-4315-01 19 56901463 56901463 G T ZNF582 Missense_Mutation p.L47I 0.25 tolerated(0.08) benign(0.041) TCGA-AZ-4315-01 19 56934890 56934890 G T ZNF583 Missense_Mutation p.R288I 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 56935408 56935408 G T ZNF583 Nonsense_Mutation p.E461* 0.40 TCGA-AZ-4315-01 19 57036197 57036197 G T ZNF471 Missense_Mutation p.R254I 0.36 tolerated(0.08) probably_damaging(0.997) TCGA-AZ-4315-01 19 57036735 57036735 T C ZNF471 Silent p.C433C 0.36 TCGA-AZ-4315-01 19 57036970 57036970 G T ZNF471 Nonsense_Mutation p.E512* 0.38 TCGA-AZ-4315-01 19 57060398 57060398 G A ZFP28 Missense_Mutation p.A199T 0.27 tolerated(0.23) benign(0.005) TCGA-AZ-4315-01 19 57290830 57290830 G T ZIM2 Missense_Mutation p.F219L 0.33 tolerated(0.21) benign(0.041) TCGA-AZ-4315-01 19 57325747 57325747 G T PEG3 Missense_Mutation p.L1355M 0.26 tolerated(0.12) possibly_damaging(0.762) TCGA-AZ-4315-01 19 57326315 57326315 A G PEG3 Silent p.C1165C 0.31 TCGA-AZ-4315-01 19 57328373 57328373 G A PEG3 Silent p.L479L 0.31 TCGA-AZ-4315-01 19 57640827 57640827 C T USP29 Missense_Mutation p.H262Y 0.35 tolerated(1) benign(0.002) TCGA-AZ-4315-01 19 57641631 57641631 T G USP29 Missense_Mutation p.Y530D 0.23 tolerated(0.21) benign(0.005) TCGA-AZ-4315-01 19 57670595 57670595 C T DUXA Missense_Mutation p.A78T 0.28 tolerated(0.34) benign(0.026) TCGA-AZ-4315-01 19 57742513 57742513 C T AURKC 5'UTR 0.75 TCGA-AZ-4315-01 19 57773046 57773046 T G CTC-444N24.8 RNA 0.28 TCGA-AZ-4315-01 19 57888547 57888547 C A ZNF547 Missense_Mutation p.S68Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 19 57910354 57910354 C A ZNF548 Missense_Mutation p.F245L 0.39 tolerated(0.67) benign(0.004) TCGA-AZ-4315-01 19 57953258 57953258 T C ZNF749 Silent p.C7C 0.39 TCGA-AZ-4315-01 19 57956289 57956289 A C ZNF749 Missense_Mutation p.K591N 0.27 deleterious(0.03) probably_damaging(0.945) TCGA-AZ-4315-01 19 57956707 57956707 A G ZNF749 Missense_Mutation p.K731E 0.39 deleterious(0.03) possibly_damaging(0.636) TCGA-AZ-4315-01 19 57956825 57956825 A G ZNF749 Missense_Mutation p.Q770R 0.31 tolerated(0.47) benign(0.403) TCGA-AZ-4315-01 19 57967483 57967483 G T VN1R1 Silent p.V124V 0.36 TCGA-AZ-4315-01 19 57984653 57984653 C T ZNF772 Missense_Mutation p.E487K 0.39 tolerated(0.1) benign(0.189) TCGA-AZ-4315-01 19 57985398 57985398 G A ZNF772 Silent p.F238F 0.35 TCGA-AZ-4315-01 19 58004947 58004947 G A ZNF419 Missense_Mutation p.R342K 0.35 tolerated(0.33) benign(0.012) TCGA-AZ-4315-01 19 58005062 58005062 T G ZNF419 Missense_Mutation p.F380L 0.32 tolerated(0.61) possibly_damaging(0.76) TCGA-AZ-4315-01 19 58018449 58018449 G A ZNF773 Missense_Mutation p.R329K 0.38 tolerated(0.17) benign(0.021) TCGA-AZ-4315-01 19 58018728 58018728 A C ZNF773 Missense_Mutation p.K422T 0.38 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 58049655 58049655 A G ZNF549 Missense_Mutation p.H428R 0.31 tolerated(0.46) benign(0.103) TCGA-AZ-4315-01 19 58059353 58059353 C A ZNF550 Missense_Mutation p.A46S 0.53 tolerated(0.28) benign(0.059) TCGA-AZ-4315-01 19 58084067 58084067 C A ZNF416 Missense_Mutation p.R402I 0.34 tolerated(0.11) benign(0.009) TCGA-AZ-4315-01 19 58087244 58087244 G A ZNF416 Missense_Mutation p.L44F 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-AZ-4315-01 19 58095647 58095647 C T ZIK1 5'UTR 0.26 TCGA-AZ-4315-01 19 58099926 58099926 A G ZIK1 Missense_Mutation p.D31G 0.34 deleterious(0) benign(0.124) TCGA-AZ-4315-01 19 58117090 58117090 C T ZNF530 Missense_Mutation p.S66F 0.28 tolerated(0.34) benign(0.106) TCGA-AZ-4315-01 19 58118219 58118219 A C ZNF530 Missense_Mutation p.K442N 0.36 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 19 58118248 58118248 G A ZNF530 Missense_Mutation p.R452Q 0.36 tolerated(1) benign(0.014) TCGA-AZ-4315-01 19 58187717 58187717 C A ZSCAN4 Silent p.I68I 0.37 TCGA-AZ-4315-01 19 58291169 58291169 A C ZNF586 3'UTR 0.36 TCGA-AZ-4315-01 19 58371551 58371551 C T ZNF587 3'UTR 0.31 TCGA-AZ-4315-01 19 58385223 58385223 C T ZNF814 Missense_Mutation p.R512Q 0.29 deleterious(0.01) benign(0.035) TCGA-AZ-4315-01 19 58420009 58420010 - T ZNF417 Frame_Shift_Ins p.R546Kfs*4 0.21 TCGA-AZ-4315-01 19 58437885 58437885 C T ZNF418 Missense_Mutation p.R555Q 0.34 tolerated(0.68) benign(0.136) TCGA-AZ-4315-01 19 58438248 58438248 G A ZNF418 Missense_Mutation p.S434F 0.25 tolerated(0.12) probably_damaging(0.985) TCGA-AZ-4315-01 19 58438381 58438381 G A ZNF418 Nonsense_Mutation p.R390* 0.34 TCGA-AZ-4315-01 19 58453263 58453263 T C ZNF256 Missense_Mutation p.N305D 0.34 tolerated(0.05) benign(0.043) TCGA-AZ-4315-01 19 58453548 58453548 G T ZNF256 Missense_Mutation p.H210N 0.28 deleterious(0.04) benign(0.135) TCGA-AZ-4315-01 19 58477992 58477992 G A C19orf18 Missense_Mutation p.R93W 0.36 deleterious(0) benign(0.356) TCGA-AZ-4315-01 19 58549316 58549316 C T ZSCAN1 Missense_Mutation p.R38C 0.27 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 19 58551827 58551827 C A ZSCAN1 Missense_Mutation p.S127Y 0.18 deleterious(0.01) possibly_damaging(0.829) TCGA-AZ-4315-01 19 58579707 58579707 A G ZNF135 Missense_Mutation p.T643A 0.30 tolerated(0.4) possibly_damaging(0.623) TCGA-AZ-4315-01 19 58639067 58639067 C A ZNF329 3'UTR 0.38 TCGA-AZ-4315-01 19 58718311 58718311 C T ZNF274 Missense_Mutation p.R161C 0.33 deleterious(0.05) possibly_damaging(0.83) TCGA-AZ-4315-01 19 58773582 58773582 C T ZNF544 Missense_Mutation p.T537M 0.28 tolerated(0.11) possibly_damaging(0.657) TCGA-AZ-4315-01 19 58806087 58806087 C T ZNF8 Missense_Mutation p.R305C 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 19 58863691 58863691 C T A1BG Missense_Mutation p.A191T 0.36 tolerated(0.64) benign(0.014) TCGA-AZ-4315-01 19 58944811 58944811 C A ZNF132 Missense_Mutation p.R667I 0.41 deleterious(0.03) probably_damaging(0.976) TCGA-AZ-4315-01 19 58989137 58989137 C A ZNF446 Missense_Mutation p.S159Y 0.21 tolerated(0.1) benign(0.104) TCGA-AZ-4315-01 19 6187782 6187782 C T ACSBG2 Missense_Mutation p.A618V 0.28 deleterious(0.01) benign(0.209) TCGA-AZ-4315-01 19 6495448 6495448 G A TUBB4A Silent p.C354C 0.34 TCGA-AZ-4315-01 19 6702210 6702210 G T C3 Missense_Mutation p.L790I 0.36 tolerated(0.36) benign(0.001) TCGA-AZ-4315-01 19 6707488 6707488 C T C3 Missense_Mutation p.R679Q 0.39 deleterious(0.01) possibly_damaging(0.721) TCGA-AZ-4315-01 19 6821672 6821672 G A VAV1 Missense_Mutation p.A121T 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 7083273 7083273 C T ZNF557 Missense_Mutation p.R271C 0.44 deleterious(0) benign(0.272) TCGA-AZ-4315-01 19 7682264 7682264 G A CAMSAP3 Missense_Mutation p.E1116K 0.39 deleterious(0) benign(0.164) TCGA-AZ-4315-01 19 7805898 7805898 C T CD209 3'UTR 0.36 TCGA-AZ-4315-01 19 7810924 7810924 C T CD209 Silent p.A76A 0.26 TCGA-AZ-4315-01 19 7828352 7828352 G T CLEC4M Missense_Mutation p.K40N 0.25 tolerated(0.09) probably_damaging(0.983) TCGA-AZ-4315-01 19 7830646 7830646 T G CLEC4M Missense_Mutation p.Y113D 0.45 tolerated(0.07) probably_damaging(0.996) TCGA-AZ-4315-01 19 7913980 7913980 C A EVI5L Missense_Mutation p.F167L 0.41 tolerated(0.07) probably_damaging(0.996) TCGA-AZ-4315-01 19 8140220 8140220 C T FBN3 Missense_Mutation p.R2510H 0.40 tolerated(0.19) benign(0.004) TCGA-AZ-4315-01 19 8152733 8152733 G A FBN3 Missense_Mutation p.R2199W 0.45 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 19 8152995 8152995 C T FBN3 Missense_Mutation p.E2149K 0.27 deleterious(0.02) benign(0.056) TCGA-AZ-4315-01 19 8326829 8326829 C T CERS4 Missense_Mutation p.R341C 0.31 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 19 855971 855971 G A ELANE Missense_Mutation p.S204N 0.44 deleterious(0.01) benign(0.269) TCGA-AZ-4315-01 19 8595422 8595422 G A MYO1F Silent p.F693F 0.44 TCGA-AZ-4315-01 19 8615496 8615496 T C MYO1F Missense_Mutation p.N285S 0.37 deleterious(0.03) possibly_damaging(0.58) TCGA-AZ-4315-01 19 8651049 8651049 G A ADAMTS10 Missense_Mutation p.P873S 0.58 tolerated(0.28) benign(0.111) TCGA-AZ-4315-01 19 8661199 8661199 G A ADAMTS10 Silent p.I394I 0.17 TCGA-AZ-4315-01 19 8809026 8809026 G A ACTL9 Missense_Mutation p.S9L 0.25 tolerated_low_confidence(0.62) benign(0) TCGA-AZ-4315-01 19 8842059 8842059 G A OR2Z1 Silent p.Q223Q 0.28 TCGA-AZ-4315-01 19 9047447 9047447 G T MUC16 Missense_Mutation p.T11395N 0.27 possibly_damaging(0.607) TCGA-AZ-4315-01 19 9048312 9048312 C T MUC16 Missense_Mutation p.A11107T 0.39 benign(0.002) TCGA-AZ-4315-01 19 9060474 9060474 C A MUC16 Missense_Mutation p.R8991I 0.06 unknown(0) TCGA-AZ-4315-01 19 9062476 9062476 T G MUC16 Missense_Mutation p.N8324H 0.32 unknown(0) TCGA-AZ-4315-01 19 9064744 9064744 T C MUC16 Missense_Mutation p.T7568A 0.37 unknown(0) TCGA-AZ-4315-01 19 9067683 9067683 G T MUC16 Missense_Mutation p.P6588H 0.32 unknown(0) TCGA-AZ-4315-01 19 9068966 9068966 A G MUC16 Silent p.G6160G 0.33 TCGA-AZ-4315-01 19 9069114 9069114 G T MUC16 Missense_Mutation p.A6111E 0.37 unknown(0) TCGA-AZ-4315-01 19 9072887 9072887 C T MUC16 Silent p.E4853E 0.34 TCGA-AZ-4315-01 19 9075387 9075387 A G MUC16 Missense_Mutation p.V4020A 0.38 unknown(0) TCGA-AZ-4315-01 19 9075654 9075654 C A MUC16 Missense_Mutation p.R3931I 0.38 unknown(0) TCGA-AZ-4315-01 19 9087897 9087897 C T MUC16 Silent p.E1306E 0.34 TCGA-AZ-4315-01 19 9090806 9090806 C A MUC16 Nonsense_Mutation p.E337* 0.33 TCGA-AZ-4315-01 19 9091258 9091258 G T MUC16 Missense_Mutation p.P186H 0.35 unknown(0) TCGA-AZ-4315-01 19 9204062 9204062 G A OR1M1 Missense_Mutation p.A48T 0.37 deleterious(0.02) benign(0.16) TCGA-AZ-4315-01 19 9225897 9225897 G A OR7G1 Silent p.V181V 0.37 TCGA-AZ-4315-01 19 9236953 9236953 A G OR7G3 Missense_Mutation p.V225A 0.39 deleterious(0.01) benign(0.013) TCGA-AZ-4315-01 19 9267379 9267379 C T ZNF317 Silent p.F39F 0.24 TCGA-AZ-4315-01 19 9298769 9298769 T G OR7D2 3'UTR 0.34 TCGA-AZ-4315-01 19 9299484 9299484 A G OR7D2 3'UTR 0.38 TCGA-AZ-4315-01 19 9362739 9362739 G T OR7E24 Nonstop_Mutation p.*340Yext*? 0.33 TCGA-AZ-4315-01 19 9406384 9406384 T C ZNF699 Missense_Mutation p.K566E 0.36 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 19 9406763 9406763 T G ZNF699 Missense_Mutation p.K439N 0.44 deleterious(0.02) benign(0.022) TCGA-AZ-4315-01 19 9408126 9408126 A G ZNF699 Missense_Mutation p.S106P 0.29 tolerated(0.12) benign(0.143) TCGA-AZ-4315-01 19 9453245 9453245 G A ZNF559 Missense_Mutation p.R373K 0.28 tolerated(0.16) possibly_damaging(0.889) TCGA-AZ-4315-01 19 9453581 9453581 G T ZNF559 Missense_Mutation p.R485I 0.35 deleterious(0) possibly_damaging(0.904) TCGA-AZ-4315-01 19 9492588 9492588 A C ZNF177 3'UTR 0.47 TCGA-AZ-4315-01 19 9523940 9523940 T C ZNF266 3'UTR 0.38 TCGA-AZ-4315-01 19 9523995 9523995 G A ZNF266 Nonsense_Mutation p.R536* 0.26 TCGA-AZ-4315-01 19 9524556 9524556 T C ZNF266 Missense_Mutation p.I349V 0.42 tolerated(0.43) benign(0.115) TCGA-AZ-4315-01 19 9764047 9764047 A G ZNF562 Missense_Mutation p.S287P 0.34 tolerated(1) benign(0.007) TCGA-AZ-4315-01 19 9764106 9764106 T G ZNF562 Missense_Mutation p.K267T 0.30 deleterious(0) possibly_damaging(0.762) TCGA-AZ-4315-01 19 9868344 9868344 C T ZNF846 Missense_Mutation p.R470Q 0.32 tolerated(0.05) possibly_damaging(0.892) TCGA-AZ-4315-01 19 9869294 9869294 C A ZNF846 Missense_Mutation p.K153N 0.33 tolerated(0.46) benign(0) TCGA-AZ-4315-01 1 100152315 100152315 C A PALMD Nonsense_Mutation p.S112* 0.30 TCGA-AZ-4315-01 1 100340757 100340757 G T AGL Missense_Mutation p.R377I 0.31 deleterious(0.04) benign(0.089) TCGA-AZ-4315-01 1 100488244 100488244 G A SLC35A3 3'UTR 0.21 TCGA-AZ-4315-01 1 100573044 100573044 C A SASS6 Missense_Mutation p.K404N 0.10 deleterious(0) probably_damaging(0.954) TCGA-AZ-4315-01 1 10067762 10067762 G T RBP7 Nonsense_Mutation p.E70* 0.25 TCGA-AZ-4315-01 1 100681727 100681727 C A DBT Missense_Mutation p.G195V 0.24 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 100921001 100921001 A C CDC14A Missense_Mutation p.K187T 0.39 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 1 101007083 101007083 T C GPR88 3'UTR 0.41 TCGA-AZ-4315-01 1 101379280 101379280 T C SLC30A7 Silent p.D191D 0.34 TCGA-AZ-4315-01 1 101427420 101427420 A C SLC30A7 Missense_Mutation p.L293F 0.32 deleterious(0) probably_damaging(0.97) TCGA-AZ-4315-01 1 10165689 10165689 T C UBE4B Silent p.I232I 0.34 TCGA-AZ-4315-01 1 10165792 10165792 T C UBE4B Missense_Mutation p.S267P 0.38 deleterious_low_confidence(0.01) benign(0.307) TCGA-AZ-4315-01 1 101705773 101705773 G A S1PR1 3'UTR 0.13 TCGA-AZ-4315-01 1 101706443 101706443 G A S1PR1 3'UTR 0.27 TCGA-AZ-4315-01 1 101706508 101706508 G T S1PR1 3'UTR 0.31 TCGA-AZ-4315-01 1 101706926 101706926 C T S1PR1 3'UTR 0.23 TCGA-AZ-4315-01 1 102296354 102296354 G T OLFM3 Silent p.V82V 0.13 TCGA-AZ-4315-01 1 102462430 102462430 C T OLFM3 5'UTR 0.38 TCGA-AZ-4315-01 1 10318673 10318673 A G KIF1B Silent p.G102G 0.35 TCGA-AZ-4315-01 1 103470017 103470017 C T COL11A1 Missense_Mutation p.G643S 0.38 unknown(0) TCGA-AZ-4315-01 1 10356961 10356961 G A KIF1B Missense_Mutation p.R577H 0.33 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 1 10363932 10363932 G T KIF1B Intron 0.24 TCGA-AZ-4315-01 1 104112861 104112861 C T AMY2B Intron 0.39 TCGA-AZ-4315-01 1 104121941 104121941 C A AMY2B Missense_Mutation p.S452Y 0.26 deleterious(0.02) benign(0.386) TCGA-AZ-4315-01 1 107601324 107601324 C T PRMT6 3'UTR 0.35 TCGA-AZ-4315-01 1 108115880 108115880 C A VAV3 3'UTR 0.42 TCGA-AZ-4315-01 1 108322087 108322087 G A VAV3 Nonsense_Mutation p.R117* 0.31 TCGA-AZ-4315-01 1 108681694 108681694 C T SLC25A24 Missense_Mutation p.R412H 0.44 deleterious(0.04) benign(0.381) TCGA-AZ-4315-01 1 108690959 108690959 C A SLC25A24 Missense_Mutation p.R291I 0.36 deleterious(0) probably_damaging(0.954) TCGA-AZ-4315-01 1 108769405 108769405 G A NBPF4 Missense_Mutation p.R591C 0.20 deleterious(0.01) benign(0.025) TCGA-AZ-4315-01 1 109191502 109191502 G A HENMT1 Missense_Mutation p.R290W 0.28 tolerated(0.16) benign(0.058) TCGA-AZ-4315-01 1 109242530 109242530 G A PRPF38B Missense_Mutation p.R510Q 0.34 tolerated_low_confidence(0.42) unknown(0) TCGA-AZ-4315-01 1 109284421 109284421 G T FNDC7 Nonsense_Mutation p.E733* 0.36 TCGA-AZ-4315-01 1 109321941 109321941 C T STXBP3 Missense_Mutation p.R240C 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 109391430 109391430 C A AKNAD1 Nonsense_Mutation p.E397* 0.17 TCGA-AZ-4315-01 1 109428140 109428140 A G GPSM2 5'UTR 0.35 TCGA-AZ-4315-01 1 109472452 109472452 C A GPSM2 Missense_Mutation p.L649I 0.34 tolerated(0.49) benign(0.018) TCGA-AZ-4315-01 1 109617626 109617626 C T TAF13 Missense_Mutation p.R30K 0.32 tolerated(0.08) benign(0.058) TCGA-AZ-4315-01 1 109742791 109742791 C A KIAA1324 Silent p.I913I 0.24 TCGA-AZ-4315-01 1 109756707 109756707 A C SARS Silent p.G31G 0.35 TCGA-AZ-4315-01 1 110036845 110036845 C A CYB561D1 Silent p.I28I 0.34 TCGA-AZ-4315-01 1 110086862 110086862 G T GPR61 Missense_Mutation p.E406D 0.33 tolerated(1) benign(0.002) TCGA-AZ-4315-01 1 11008835 11008835 G T C1orf127 Missense_Mutation p.L453I 0.36 tolerated(0.61) benign(0.006) TCGA-AZ-4315-01 1 110199382 110199382 G A GSTM4 Missense_Mutation p.E29K 0.32 deleterious(0.05) benign(0.145) TCGA-AZ-4315-01 1 110211085 110211085 C A GSTM2 Missense_Mutation p.D25E 0.28 tolerated(0.39) benign(0.002) TCGA-AZ-4315-01 1 110260010 110260010 C A GSTM5 Missense_Mutation p.L207I 0.33 deleterious(0) benign(0.033) TCGA-AZ-4315-01 1 110294278 110294278 G A EPS8L3 Missense_Mutation p.R522W 0.33 tolerated(0.09) benign(0.023) TCGA-AZ-4315-01 1 110740774 110740774 C A SLC6A17 Missense_Mutation p.P631H 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 11076975 11076975 G A TARDBP Missense_Mutation p.D105N 0.42 deleterious(0.04) benign(0.189) TCGA-AZ-4315-01 1 110884414 110884414 A G RBM15 Missense_Mutation p.N796S 0.37 tolerated(0.13) possibly_damaging(0.654) TCGA-AZ-4315-01 1 11116800 11116800 G T SRM Silent p.V132V 0.22 TCGA-AZ-4315-01 1 111490669 111490669 C T LRIF1 Missense_Mutation p.R741Q 0.07 deleterious(0.02) possibly_damaging(0.776) TCGA-AZ-4315-01 1 111495395 111495395 C T LRIF1 Silent p.S37S 0.22 TCGA-AZ-4315-01 1 111730978 111730978 T G DENND2D Missense_Mutation p.N372H 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 111738656 111738656 C A DENND2D Missense_Mutation p.R176I 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 111860348 111860348 C T CHIA Missense_Mutation p.P176S 0.31 tolerated(0.12) benign(0.089) TCGA-AZ-4315-01 1 113010113 113010113 A G WNT2B 5'UTR 0.41 TCGA-AZ-4315-01 1 113242357 113242357 C T MOV10 Silent p.I878I 0.28 TCGA-AZ-4315-01 1 113246340 113246340 C A RHOC Missense_Mutation p.D28Y 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-AZ-4315-01 1 113460027 113460027 G A SLC16A1 Missense_Mutation p.A334V 0.29 deleterious(0) probably_damaging(0.929) TCGA-AZ-4315-01 1 114196468 114196468 C T MAGI3 Silent p.D819D 0.36 TCGA-AZ-4315-01 1 114253027 114253027 C T PHTF1 Missense_Mutation p.R373H 0.33 tolerated(0.08) probably_damaging(0.973) TCGA-AZ-4315-01 1 114354511 114354511 G A RSBN1 Missense_Mutation p.P175L 0.28 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AZ-4315-01 1 115128164 115128164 A C DENND2C 3'UTR 0.32 TCGA-AZ-4315-01 1 115130547 115130547 C T DENND2C Missense_Mutation p.E820K 0.31 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 1 115147588 115147588 C T DENND2C Missense_Mutation p.C541Y 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 115167890 115167890 T C DENND2C Missense_Mutation p.E239G 0.32 tolerated(0.37) benign(0.071) TCGA-AZ-4315-01 1 115168639 115168639 T G DENND2C 5'UTR 0.20 TCGA-AZ-4315-01 1 115223040 115223040 T G AMPD1 Missense_Mutation p.N236H 0.34 deleterious(0.04) probably_damaging(0.95) TCGA-AZ-4315-01 1 115399883 115399883 C T SYCP1 Missense_Mutation p.P75L 0.36 deleterious(0.02) probably_damaging(0.965) TCGA-AZ-4315-01 1 115400078 115400078 A G SYCP1 Missense_Mutation p.D84G 0.24 tolerated(0.37) benign(0.007) TCGA-AZ-4315-01 1 11596518 11596518 C T PTCHD2 Silent p.F1318F 0.36 TCGA-AZ-4315-01 1 117087118 117087118 T G CD58 Missense_Mutation p.K60T 0.26 tolerated(0.06) possibly_damaging(0.829) TCGA-AZ-4315-01 1 11721246 11721246 C T FBXO44 Silent p.G228G 0.39 TCGA-AZ-4315-01 1 117311552 117311552 G A CD2 3'UTR 0.33 TCGA-AZ-4315-01 1 117487523 117487523 G A PTGFRN Missense_Mutation p.R214H 0.28 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 1 117561007 117561007 G A CD101 Silent p.T614T 0.14 TCGA-AZ-4315-01 1 117641458 117641458 T G TTF2 Missense_Mutation p.N1091K 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 11772432 11772432 G A DRAXIN Missense_Mutation p.E265K 0.32 tolerated(0.46) benign(0.147) TCGA-AZ-4315-01 1 118039413 118039413 C A MAN1A2 Missense_Mutation p.S438Y 0.38 deleterious(0) probably_damaging(0.94) TCGA-AZ-4315-01 1 11806254 11806254 C T AGTRAP Intron 0.31 TCGA-AZ-4315-01 1 118167225 118167225 G A FAM46C 3'UTR 0.32 TCGA-AZ-4315-01 1 118454616 118454616 G A GDAP2 Missense_Mutation p.R187C 0.40 deleterious(0) probably_damaging(0.915) TCGA-AZ-4315-01 1 118491112 118491112 T C WDR3 Missense_Mutation p.S503P 0.32 tolerated(0.07) possibly_damaging(0.507) TCGA-AZ-4315-01 1 118492437 118492437 G T WDR3 Missense_Mutation p.D530Y 0.39 deleterious(0) probably_damaging(0.935) TCGA-AZ-4315-01 1 118634279 118634279 G A SPAG17 Nonsense_Mutation p.R437* 0.34 TCGA-AZ-4315-01 1 11894383 11894383 C T CLCN6 Silent p.S539S 0.40 TCGA-AZ-4315-01 1 119441681 119441681 C T TBX15 Missense_Mutation p.E226K 0.37 tolerated(0.74) probably_damaging(0.981) TCGA-AZ-4315-01 1 119957970 119957970 G A HSD3B2 5'UTR 0.20 TCGA-AZ-4315-01 1 120056974 120056974 C T HSD3B1 Silent p.F276F 0.31 TCGA-AZ-4315-01 1 120286738 120286738 A C PHGDH 3'UTR 0.35 TCGA-AZ-4315-01 1 120351447 120351447 C T REG4 5'UTR 0.40 TCGA-AZ-4315-01 1 12089158 12089158 C T MIIP Missense_Mutation p.R206W 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 120927316 120927316 C A FCGR1B Nonsense_Mutation p.E222* 0.27 TCGA-AZ-4315-01 1 12320823 12320823 G A VPS13D Missense_Mutation p.R395Q 0.39 probably_damaging(0.928) TCGA-AZ-4315-01 1 12337862 12337862 T C VPS13D Missense_Mutation p.F1406S 0.32 benign(0) TCGA-AZ-4315-01 1 12443104 12443104 C T VPS13D Missense_Mutation p.L3754F 0.38 possibly_damaging(0.844) TCGA-AZ-4315-01 1 12446327 12446327 A C VPS13D Silent p.G3856G 0.13 TCGA-AZ-4315-01 1 12711221 12711221 A C AADACL4 Missense_Mutation p.K83T 0.35 tolerated(0.11) possibly_damaging(0.691) TCGA-AZ-4315-01 1 12815678 12815678 A G C1orf158 Missense_Mutation p.Q47R 0.33 tolerated(0.18) benign(0.033) TCGA-AZ-4315-01 1 12819361 12819361 G A C1orf158 Missense_Mutation p.R115H 0.30 deleterious(0.03) probably_damaging(0.993) TCGA-AZ-4315-01 1 12835291 12835291 G A PRAMEF12 Missense_Mutation p.R94H 0.25 tolerated(0.4) benign(0.001) TCGA-AZ-4315-01 1 12908204 12908204 C T HNRNPCL1 5'UTR 0.14 TCGA-AZ-4315-01 1 12919714 12919714 G T PRAMEF2 Missense_Mutation p.D152Y 0.46 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 1 1356311 1356311 G A ANKRD65 Silent p.S25S 0.37 TCGA-AZ-4315-01 1 13743014 13743014 C A PRAMEF20 Missense_Mutation p.S68Y 0.28 deleterious(0) possibly_damaging(0.648) TCGA-AZ-4315-01 1 13839654 13839654 C A LRRC38 Missense_Mutation p.E145D 0.47 tolerated(0.19) possibly_damaging(0.831) TCGA-AZ-4315-01 1 14108713 14108713 G A PRDM2 Missense_Mutation p.A1475T 0.39 unknown(0) TCGA-AZ-4315-01 1 14108955 14108955 G A PRDM2 Silent p.Q1555Q 0.34 TCGA-AZ-4315-01 1 14143030 14143030 C A PRDM2 Missense_Mutation p.F1715L 0.27 unknown(0) TCGA-AZ-4315-01 1 143910147 143910147 T C FAM72D Missense_Mutation p.D54G 0.14 tolerated(0.17) benign(0.162) TCGA-AZ-4315-01 1 144825422 144825422 G A NBPF9 Silent p.S457S 0.24 TCGA-AZ-4315-01 1 144828606 144828606 A G NBPF9 Missense_Mutation p.Y625C 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 1 144864142 144864142 C T PDE4DIP Missense_Mutation p.D1985N 0.14 tolerated(1) benign(0.007) TCGA-AZ-4315-01 1 144864176 144864176 A C PDE4DIP Missense_Mutation p.H1973Q 0.17 tolerated(1) benign(0.009) TCGA-AZ-4315-01 1 144864276 144864276 C T PDE4DIP Missense_Mutation p.R1940Q 0.14 tolerated(0.32) benign(0.032) TCGA-AZ-4315-01 1 144874794 144874794 C A PDE4DIP Missense_Mutation p.R1605L 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 1 144882800 144882800 G A PDE4DIP Silent p.I1073I 0.22 TCGA-AZ-4315-01 1 144892345 144892345 C T PDE4DIP Intron 0.17 TCGA-AZ-4315-01 1 144915524 144915524 C T PDE4DIP Missense_Mutation p.R634Q 0.10 deleterious(0.01) possibly_damaging(0.802) TCGA-AZ-4315-01 1 145115767 145115767 C A SEC22B RNA 0.09 TCGA-AZ-4315-01 1 145282014 145282014 G T NOTCH2NL Nonsense_Mutation p.E232* 0.10 TCGA-AZ-4315-01 1 145537496 145537496 A C ITGA10 Missense_Mutation p.N836H 0.38 deleterious(0) benign(0.33) TCGA-AZ-4315-01 1 145538788 145538788 G T ITGA10 Nonsense_Mutation p.E967* 0.19 TCGA-AZ-4315-01 1 145561325 145561325 G A ANKRD35 Missense_Mutation p.R338Q 0.37 tolerated(0.33) benign(0) TCGA-AZ-4315-01 1 146639424 146639424 C T PRKAB2 Missense_Mutation p.R82H 0.33 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 1 147380334 147380334 C T GJA8 Silent p.F84F 0.24 TCGA-AZ-4315-01 1 147380398 147380398 C T GJA8 Missense_Mutation p.R106C 0.25 deleterious(0.01) probably_damaging(0.935) TCGA-AZ-4315-01 1 148024751 148024751 C G NBPF14 Silent p.G88G 0.21 TCGA-AZ-4315-01 1 148251740 148251740 G A NBPF20 3'UTR 0.38 TCGA-AZ-4315-01 1 149755502 149755502 G A FCGR1A Intron 0.24 TCGA-AZ-4315-01 1 149761760 149761760 G A FCGR1A Missense_Mutation p.R237Q 0.31 tolerated(0.3) benign(0.01) TCGA-AZ-4315-01 1 149881434 149881434 C T SV2A Silent p.K366K 0.36 TCGA-AZ-4315-01 1 149915861 149915861 G T OTUD7B Missense_Mutation p.F809L 0.26 deleterious_low_confidence(0) benign(0.388) TCGA-AZ-4315-01 1 149937711 149937711 C T OTUD7B Missense_Mutation p.A199T 0.36 deleterious(0) possibly_damaging(0.866) TCGA-AZ-4315-01 1 150054023 150054023 T G VPS45 Missense_Mutation p.F294V 0.34 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 150266768 150266768 A C MRPS21 5'UTR 0.36 TCGA-AZ-4315-01 1 150307624 150307624 C T PRPF3 Missense_Mutation p.S316F 0.42 tolerated(0.18) benign(0.012) TCGA-AZ-4315-01 1 150390080 150390080 C T RPRD2 Missense_Mutation p.P72S 0.32 tolerated_low_confidence(0.37) benign(0.113) TCGA-AZ-4315-01 1 150444923 150444923 T C RPRD2 Missense_Mutation p.Y1167H 0.37 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-AZ-4315-01 1 150667140 150667140 C A GOLPH3L Missense_Mutation p.D59Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 1 150689669 150689669 G T HORMAD1 Silent p.I41I 0.30 TCGA-AZ-4315-01 1 150955900 150955900 T G ANXA9 Missense_Mutation p.I54M 0.37 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 1 151009924 151009924 G T BNIPL Intron 0.41 TCGA-AZ-4315-01 1 151143512 151143512 G A TMOD4 Missense_Mutation p.R252C 0.45 deleterious(0) possibly_damaging(0.513) TCGA-AZ-4315-01 1 151374399 151374399 A C PSMB4 3'UTR 0.21 TCGA-AZ-4315-01 1 151380989 151380989 G A POGZ Silent p.S710S 0.25 TCGA-AZ-4315-01 1 151665517 151665517 T G SNX27 Splice_Site p.X506_splice 0.30 TCGA-AZ-4315-01 1 151681494 151681494 G T CELF3 Missense_Mutation p.H156N 0.33 deleterious(0.02) probably_damaging(0.91) TCGA-AZ-4315-01 1 152058410 152058410 G A TCHHL1 Missense_Mutation p.S583F 0.33 deleterious(0.01) possibly_damaging(0.83) TCGA-AZ-4315-01 1 152188884 152188884 G A HRNR Missense_Mutation p.R1741C 0.10 unknown(0) TCGA-AZ-4315-01 1 152192113 152192113 T C HRNR Silent p.R664R 0.36 TCGA-AZ-4315-01 1 152279040 152279040 G T FLG Silent p.S2774S 0.20 TCGA-AZ-4315-01 1 152280454 152280454 C T FLG Missense_Mutation p.G2303D 0.28 probably_damaging(0.931) TCGA-AZ-4315-01 1 152323489 152323489 G A FLG2 Missense_Mutation p.S2258F 0.36 possibly_damaging(0.703) TCGA-AZ-4315-01 1 152324839 152324839 T C FLG2 Missense_Mutation p.D1808G 0.38 probably_damaging(0.999) TCGA-AZ-4315-01 1 152324900 152324900 A C FLG2 Missense_Mutation p.S1788A 0.38 benign(0.373) TCGA-AZ-4315-01 1 152327145 152327145 T C FLG2 Silent p.G1039G 0.29 TCGA-AZ-4315-01 1 152382292 152382292 T C CRNN Silent p.P422P 0.26 TCGA-AZ-4315-01 1 152538623 152538623 C A LCE3E Missense_Mutation p.C21F 0.27 deleterious_low_confidence(0) unknown(0) TCGA-AZ-4315-01 1 152732430 152732430 C T KPRP Silent p.C122C 0.31 TCGA-AZ-4315-01 1 152732464 152732464 G T KPRP Nonsense_Mutation p.E134* 0.41 TCGA-AZ-4315-01 1 152816460 152816460 G T LCE6A 3'Flank 0.29 TCGA-AZ-4315-01 1 152944752 152944752 T G SPRR4 3'UTR 0.30 TCGA-AZ-4315-01 1 153177568 153177568 A G LELP1 3'UTR 0.33 TCGA-AZ-4315-01 1 153234546 153234546 A G LOR 3'UTR 0.21 TCGA-AZ-4315-01 1 153390687 153390687 C T S100A7A Silent p.F43F 0.29 TCGA-AZ-4315-01 1 153430389 153430389 C T S100A7 Missense_Mutation p.D67N 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 153516264 153516264 A C S100A4 Missense_Mutation p.F93V 0.34 tolerated(0.5) benign(0.012) TCGA-AZ-4315-01 1 153604231 153604231 G T S100A1 Missense_Mutation p.D67Y 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 153945724 153945724 T G CREB3L4 Missense_Mutation p.L266R 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 154062057 154062057 C T NUP210L Missense_Mutation p.R734Q 0.33 tolerated(0.21) benign(0.023) TCGA-AZ-4315-01 1 154163670 154163670 C A TPM3 Missense_Mutation p.A79S 0.31 tolerated(0.09) possibly_damaging(0.648) TCGA-AZ-4315-01 1 154192409 154192409 A C C1orf43 Missense_Mutation p.F24C 0.30 tolerated(0.1) benign(0.405) TCGA-AZ-4315-01 1 154294504 154294504 G A AQP10 Silent p.T67T 0.09 TCGA-AZ-4315-01 1 154301510 154301510 C T ATP8B2 Intron 0.44 TCGA-AZ-4315-01 1 154515229 154515229 A G TDRD10 Silent p.K145K 0.32 TCGA-AZ-4315-01 1 154515256 154515256 G T TDRD10 Missense_Mutation p.E154D 0.24 tolerated(0.14) benign(0.031) TCGA-AZ-4315-01 1 154516508 154516508 C T TDRD10 Silent p.S191S 0.26 TCGA-AZ-4315-01 1 154519897 154519897 C T TDRD10 Missense_Mutation p.S322L 0.32 deleterious(0.04) possibly_damaging(0.789) TCGA-AZ-4315-01 1 154543740 154543740 G A CHRNB2 Silent p.P147P 0.31 TCGA-AZ-4315-01 1 154744747 154744747 G T KCNN3 Missense_Mutation p.F384L 0.33 deleterious(0.03) probably_damaging(0.979) TCGA-AZ-4315-01 1 154918846 154918846 C A PBXIP1 Missense_Mutation p.R435I 0.40 deleterious(0) possibly_damaging(0.687) TCGA-AZ-4315-01 1 154962066 154962066 C T FLAD1 Missense_Mutation p.A383V 0.37 deleterious(0) probably_damaging(0.954) TCGA-AZ-4315-01 1 155006026 155006026 C T DCST2 Missense_Mutation p.S51N 0.44 tolerated(0.56) benign(0.115) TCGA-AZ-4315-01 1 155156329 155156329 C T TRIM46 Missense_Mutation p.S648L 0.60 tolerated(0.11) benign(0.001) TCGA-AZ-4315-01 1 155290306 155290306 G A FDPS Missense_Mutation p.S389N 0.41 tolerated(0.5) benign(0) TCGA-AZ-4315-01 1 155290652 155290652 G A RUSC1 5'Flank 0.32 TCGA-AZ-4315-01 1 155348300 155348300 G A ASH1L Missense_Mutation p.R2073C 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AZ-4315-01 1 155631211 155631211 A G YY1AP1 Missense_Mutation p.Y433H 0.27 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 1 155911667 155911667 G T RXFP4 Missense_Mutation p.G56V 0.22 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 1 156219721 156219721 A C SMG5 3'UTR 0.33 TCGA-AZ-4315-01 1 156262998 156262998 G A C1orf85 Missense_Mutation p.S353L 0.36 deleterious(0) benign(0.192) TCGA-AZ-4315-01 1 156316771 156316771 T C TSACC Nonstop_Mutation p.*126Rext*? 0.41 TCGA-AZ-4315-01 1 156618453 156618453 G A BCAN Missense_Mutation p.G288D 0.27 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 15679403 15679403 C T FHAD1 Missense_Mutation p.R42C 0.31 deleterious(0.04) benign(0.009) TCGA-AZ-4315-01 1 156845998 156845998 T G NTRK1 Missense_Mutation p.V543G 0.47 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 156851306 156851306 G T NTRK1 Nonsense_Mutation p.E755* 0.39 TCGA-AZ-4315-01 1 157494199 157494199 G T FCRL5 Silent p.I703I 0.35 TCGA-AZ-4315-01 1 157522188 157522188 G T FCRL5 5'UTR 0.24 TCGA-AZ-4315-01 1 157557795 157557795 T C FCRL4 Missense_Mutation p.N141S 0.26 tolerated(0.11) benign(0.089) TCGA-AZ-4315-01 1 157648568 157648568 C T FCRL3 Missense_Mutation p.A713T 0.22 tolerated(0.51) benign(0.003) TCGA-AZ-4315-01 1 157772381 157772381 G A FCRL1 Silent p.V131V 0.35 TCGA-AZ-4315-01 1 157803101 157803101 C T CD5L Missense_Mutation p.R307H 0.29 tolerated(0.12) benign(0.086) TCGA-AZ-4315-01 1 157895782 157895782 C T RP11-451O13.1 RNA 0.33 TCGA-AZ-4315-01 1 158063474 158063474 A G KIRREL Silent p.P547P 0.37 TCGA-AZ-4315-01 1 158152713 158152713 G A CD1D Missense_Mutation p.G218D 0.31 tolerated(0.11) benign(0.145) TCGA-AZ-4315-01 1 158152835 158152835 G A CD1D Missense_Mutation p.E259K 0.41 tolerated(0.09) benign(0.025) TCGA-AZ-4315-01 1 158549276 158549276 G A OR10X1 Silent p.R138R 0.29 TCGA-AZ-4315-01 1 158576255 158576255 G A OR10Z1 Nonsense_Mutation p.W9* 0.29 TCGA-AZ-4315-01 1 15863306 15863306 T G DNAJC16 Missense_Mutation p.L191V 0.35 tolerated(0.1) possibly_damaging(0.597) TCGA-AZ-4315-01 1 158639205 158639206 - CTTCATCA SPTA1 Frame_Shift_Ins p.D609Vfs*11 0.14 TCGA-AZ-4315-01 1 158639496 158639496 T C SPTA1 Intron 0.21 TCGA-AZ-4315-01 1 158644202 158644202 C T SPTA1 Missense_Mutation p.D423N 0.28 tolerated(0.13) possibly_damaging(0.531) TCGA-AZ-4315-01 1 158670075 158670075 A G OR6K2 Missense_Mutation p.L123P 0.37 deleterious(0) possibly_damaging(0.775) TCGA-AZ-4315-01 1 158815707 158815707 G A MNDA Missense_Mutation p.E301K 0.40 tolerated(1) benign(0) TCGA-AZ-4315-01 1 158909365 158909365 C A PYHIN1 Intron 0.28 TCGA-AZ-4315-01 1 15893704 15893704 C T DNAJC16 Missense_Mutation p.S630L 0.38 deleterious(0.04) possibly_damaging(0.506) TCGA-AZ-4315-01 1 158990260 158990260 C T IFI16 Nonsense_Mutation p.R368* 0.33 TCGA-AZ-4315-01 1 159021716 159021716 G A IFI16 Missense_Mutation p.R582H 0.22 tolerated(0.11) benign(0.049) TCGA-AZ-4315-01 1 159033350 159033350 G A AIM2 Nonsense_Mutation p.R311* 0.32 TCGA-AZ-4315-01 1 159043177 159043177 C T AIM2 Missense_Mutation p.G38D 0.43 tolerated(0.83) benign(0.202) TCGA-AZ-4315-01 1 159802702 159802702 C T SLAMF8 Missense_Mutation p.A135V 0.28 tolerated(0.11) benign(0.206) TCGA-AZ-4315-01 1 159842768 159842768 C T CCDC19 Missense_Mutation p.D515N 0.41 tolerated(0.31) benign(0.006) TCGA-AZ-4315-01 1 159846436 159846436 C T CCDC19 Missense_Mutation p.R421Q 0.34 tolerated(0.08) benign(0.312) TCGA-AZ-4315-01 1 159912819 159912819 C T IGSF9 Missense_Mutation p.G61R 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 160064992 160064992 A C IGSF8 Missense_Mutation p.L37V 0.38 deleterious(0.04) probably_damaging(0.996) TCGA-AZ-4315-01 1 160105036 160105036 G A ATP1A2 Missense_Mutation p.R689Q 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 160105338 160105338 G A ATP1A2 Missense_Mutation p.D744N 0.34 deleterious(0.01) possibly_damaging(0.501) TCGA-AZ-4315-01 1 160143903 160143903 C T ATP1A4 Missense_Mutation p.A665V 0.33 deleterious(0.01) benign(0.053) TCGA-AZ-4315-01 1 160165719 160165719 G A CASQ1 Silent p.E228E 0.32 TCGA-AZ-4315-01 1 160178371 160178371 T G PEA15 Intron 0.29 TCGA-AZ-4315-01 1 160201154 160201154 A G DCAF8 Missense_Mutation p.Y335H 0.25 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 1 160283843 160283843 C T COPA Missense_Mutation p.R260H 0.28 tolerated(0.4) benign(0.118) TCGA-AZ-4315-01 1 160389143 160389143 C T VANGL2 Missense_Mutation p.R182C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 160390961 160390961 C T VANGL2 Missense_Mutation p.R353C 0.47 deleterious(0) probably_damaging(0.966) TCGA-AZ-4315-01 1 160492985 160492985 T G SLAMF6 5'UTR 0.38 TCGA-AZ-4315-01 1 16060340 16060340 T C PLEKHM2 Missense_Mutation p.F991L 0.30 tolerated(0.19) benign(0.003) TCGA-AZ-4315-01 1 160616811 160616811 C T SLAMF1 5'UTR 0.33 TCGA-AZ-4315-01 1 160723024 160723024 G A SLAMF7 3'UTR 0.35 TCGA-AZ-4315-01 1 160801146 160801146 A G CD244 Silent p.V368V 0.44 TCGA-AZ-4315-01 1 160969190 160969190 T G F11R Missense_Mutation p.K271Q 0.25 deleterious(0.02) benign(0.418) TCGA-AZ-4315-01 1 161018495 161018495 C T ARHGAP30 Silent p.G772G 0.33 TCGA-AZ-4315-01 1 161088576 161088576 G A NIT1 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-AZ-4315-01 1 161140922 161140922 C T PPOX Missense_Mutation p.R464C 0.17 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 1 161166670 161166670 G A ADAMTS4 Missense_Mutation p.R212C 0.60 deleterious(0) possibly_damaging(0.751) TCGA-AZ-4315-01 1 161276706 161276706 G A MPZ Silent p.F80F 0.36 TCGA-AZ-4315-01 1 161601072 161601072 A G FCGR3B 5'Flank 0.25 TCGA-AZ-4315-01 1 161693354 161693354 C T FCRLB Nonsense_Mutation p.R84* 0.32 TCGA-AZ-4315-01 1 161695796 161695796 C T FCRLB Missense_Mutation p.R165C 0.43 tolerated(0.18) possibly_damaging(0.906) TCGA-AZ-4315-01 1 161697218 161697218 G A FCRLB Silent p.A349A 0.61 TCGA-AZ-4315-01 1 16203104 16203104 G A SPEN Missense_Mutation p.G271D 0.31 probably_damaging(1) TCGA-AZ-4315-01 1 16259895 16259895 G A SPEN Missense_Mutation p.S2387N 0.27 benign(0.002) TCGA-AZ-4315-01 1 162825017 162825017 G T C1orf110 Nonsense_Mutation p.C149* 0.36 TCGA-AZ-4315-01 1 163298062 163298062 C T NUF2 Silent p.G81G 0.32 TCGA-AZ-4315-01 1 16378031 16378031 T G CLCNKB Missense_Mutation p.I429S 0.32 deleterious(0) possibly_damaging(0.557) TCGA-AZ-4315-01 1 164790828 164790828 G A PBX1 Missense_Mutation p.A389T 0.33 tolerated(0.53) benign(0.001) TCGA-AZ-4315-01 1 165624743 165624743 G T MGST3 3'UTR 0.30 TCGA-AZ-4315-01 1 1656726 1656726 G C CDK11A 5'Flank 0.08 TCGA-AZ-4315-01 1 165877165 165877165 G T UCK2 3'UTR 0.26 TCGA-AZ-4315-01 1 166888448 166888448 C A ILDR2 3'UTR 0.26 TCGA-AZ-4315-01 1 166944556 166944556 T G ILDR2 5'UTR 0.30 TCGA-AZ-4315-01 1 166958628 166958628 C A MAEL Missense_Mutation p.F13L 0.18 tolerated(0.1) possibly_damaging(0.801) TCGA-AZ-4315-01 1 167097925 167097925 G A DUSP27 3'UTR 0.36 TCGA-AZ-4315-01 1 168260505 168260505 T C TBX19 Missense_Mutation p.V104A 0.43 deleterious(0.01) benign(0.365) TCGA-AZ-4315-01 1 16921464 16921464 C T NBPF1 5'UTR 0.12 TCGA-AZ-4315-01 1 169293689 169293689 G A NME7 Missense_Mutation p.A18V 0.36 deleterious(0) probably_damaging(0.95) TCGA-AZ-4315-01 1 169345966 169345966 G T BLZF1 Missense_Mutation p.A73S 0.45 tolerated_low_confidence(0.34) benign(0.053) TCGA-AZ-4315-01 1 169346235 169346235 C T BLZF1 Intron 0.33 TCGA-AZ-4315-01 1 169364308 169364308 G A CCDC181 Missense_Mutation p.R502C 0.29 tolerated(0.08) probably_damaging(1) TCGA-AZ-4315-01 1 169511255 169511255 A G F5 Missense_Mutation p.F1025L 0.28 tolerated(0.28) benign(0.009) TCGA-AZ-4315-01 1 169511556 169511556 C T F5 Nonsense_Mutation p.W924* 0.39 TCGA-AZ-4315-01 1 169524505 169524505 G A F5 Missense_Mutation p.R345W 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 169524564 169524564 T C F5 Missense_Mutation p.D325G 0.34 deleterious(0.02) possibly_damaging(0.544) TCGA-AZ-4315-01 1 169578790 169578790 G A SELP Missense_Mutation p.R429W 0.62 tolerated(0.14) benign(0.009) TCGA-AZ-4315-01 1 169586560 169586560 G A SELP Missense_Mutation p.R63C 0.32 deleterious(0.01) possibly_damaging(0.739) TCGA-AZ-4315-01 1 169699744 169699744 C T SELE Missense_Mutation p.A182T 0.43 tolerated(0.24) benign(0.41) TCGA-AZ-4315-01 1 170695377 170695377 G A PRRX1 Missense_Mutation p.R145Q 0.24 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 1 17083495 17083495 A T MST1L RNA 0.21 TCGA-AZ-4315-01 1 170955788 170955788 C T MROH9 Silent p.I272I 0.23 TCGA-AZ-4315-01 1 171061895 171061895 G T FMO3 Missense_Mutation p.E32D 0.35 deleterious(0) possibly_damaging(0.681) TCGA-AZ-4315-01 1 171083375 171083375 A G FMO3 Silent p.L352L 0.26 TCGA-AZ-4315-01 1 171116779 171116779 C T FMO6P Nonsense_Mutation p.R167* 0.29 TCGA-AZ-4315-01 1 171118798 171118798 C A FMO6P Missense_Mutation p.L243I 0.26 tolerated(0.3) possibly_damaging(0.521) TCGA-AZ-4315-01 1 171178096 171178096 C T FMO2 3'UTR 0.36 TCGA-AZ-4315-01 1 171227332 171227332 G T FMO1 Missense_Mutation p.D36Y 0.44 deleterious(0.01) benign(0.358) TCGA-AZ-4315-01 1 171310875 171310875 C T FMO4 Missense_Mutation p.A525V 0.28 tolerated(0.51) benign(0.023) TCGA-AZ-4315-01 1 171501644 171501644 C T PRRC2C Nonsense_Mutation p.R471* 0.07 TCGA-AZ-4315-01 1 171501917 171501917 G A PRRC2C Missense_Mutation p.E562K 0.31 unknown(0) TCGA-AZ-4315-01 1 171502017 171502017 A C PRRC2C Missense_Mutation p.K595T 0.32 unknown(0) TCGA-AZ-4315-01 1 171514717 171514717 G T PRRC2C Missense_Mutation p.K1619N 0.36 unknown(0) TCGA-AZ-4315-01 1 171673459 171673459 G T VAMP4 3'UTR 0.31 TCGA-AZ-4315-01 1 171673561 171673561 A G VAMP4 3'UTR 0.32 TCGA-AZ-4315-01 1 172017799 172017799 A C DNM3 Missense_Mutation p.K415T 0.37 deleterious(0.01) probably_damaging(0.915) TCGA-AZ-4315-01 1 172356385 172356385 G A DNM3 Missense_Mutation p.R724Q 0.19 tolerated(0.07) benign(0.387) TCGA-AZ-4315-01 1 172410809 172410809 C T PIGC 3'UTR 0.38 TCGA-AZ-4315-01 1 172558187 172558187 G A SUCO Missense_Mutation p.R649Q 0.40 tolerated(0.11) benign(0.095) TCGA-AZ-4315-01 1 17257814 17257814 A G CROCC Missense_Mutation p.H293R 0.19 probably_damaging(0.99) TCGA-AZ-4315-01 1 172579060 172579060 G A SUCO Silent p.T1142T 0.32 TCGA-AZ-4315-01 1 172579245 172579245 G A SUCO Missense_Mutation p.R1204Q 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-AZ-4315-01 1 17270699 17270699 G A CROCC Missense_Mutation p.R638H 0.18 probably_damaging(0.998) TCGA-AZ-4315-01 1 17272038 17272038 C T CROCC Silent p.R691R 0.20 TCGA-AZ-4315-01 1 17303613 17303613 C T MFAP2 Missense_Mutation p.D40N 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.72) TCGA-AZ-4315-01 1 173155691 173155691 A G TNFSF4 Silent p.L172L 0.31 TCGA-AZ-4315-01 1 173454641 173454641 C T PRDX6 Missense_Mutation p.R132C 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4315-01 1 173493116 173493116 A C SLC9C2 Missense_Mutation p.F878V 0.31 deleterious(0) probably_damaging(0.914) TCGA-AZ-4315-01 1 173502834 173502834 T G SLC9C2 Missense_Mutation p.K693Q 0.34 tolerated(0.14) possibly_damaging(0.717) TCGA-AZ-4315-01 1 173594042 173594042 C T ANKRD45 Missense_Mutation p.R205H 0.30 tolerated(0.06) benign(0.004) TCGA-AZ-4315-01 1 173751339 173751339 A C KLHL20 Missense_Mutation p.E572D 0.10 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 173769513 173769513 C T CENPL 3'UTR 0.46 TCGA-AZ-4315-01 1 173780349 173780349 C T CENPL Missense_Mutation p.R30Q 0.39 tolerated(0.32) benign(0.043) TCGA-AZ-4315-01 1 173878776 173878776 C T SERPINC1 Missense_Mutation p.R356H 0.37 deleterious(0) benign(0.057) TCGA-AZ-4315-01 1 173881022 173881022 C T SERPINC1 Missense_Mutation p.G180E 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 173950025 173950025 T G RC3H1 Silent p.R297R 0.32 TCGA-AZ-4315-01 1 173950102 173950102 C A RC3H1 Nonsense_Mutation p.E272* 0.29 TCGA-AZ-4315-01 1 1747287 1747287 G A GNB1 Silent p.I37I 0.27 TCGA-AZ-4315-01 1 175063149 175063149 G C TNN Missense_Mutation p.V450L 0.36 tolerated(0.32) benign(0.101) TCGA-AZ-4315-01 1 175335069 175335069 G A TNR Silent p.S753S 0.07 TCGA-AZ-4315-01 1 175365849 175365849 G T TNR Silent p.I357I 0.33 TCGA-AZ-4315-01 1 176564181 176564181 C A PAPPA2 Missense_Mutation p.L481I 0.30 tolerated(0.39) benign(0.175) TCGA-AZ-4315-01 1 176659653 176659653 G A PAPPA2 Intron 0.32 TCGA-AZ-4315-01 1 176853551 176853551 G A ASTN1 Silent p.I1050I 0.25 TCGA-AZ-4315-01 1 176903404 176903404 A G ASTN1 Missense_Mutation p.F852S 0.42 deleterious(0) probably_damaging(0.974) TCGA-AZ-4315-01 1 176903419 176903419 G A ASTN1 Missense_Mutation p.A847V 0.42 deleterious(0.01) benign(0.246) TCGA-AZ-4315-01 1 176905356 176905356 C A ASTN1 Intron 0.29 TCGA-AZ-4315-01 1 177133596 177133596 C T ASTN1 Missense_Mutation p.D73N 0.38 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AZ-4315-01 1 17720848 17720848 G A PADI6 RNA 0.45 TCGA-AZ-4315-01 1 177249821 177249821 T C BRINP2 Silent p.L503L 0.30 TCGA-AZ-4315-01 1 178834771 178834771 C A ANGPTL1 Missense_Mutation p.K47N 0.31 tolerated(0.44) benign(0.06) TCGA-AZ-4315-01 1 178858784 178858784 C T RALGPS2 Silent p.S400S 0.41 TCGA-AZ-4315-01 1 178866866 178866866 C A RALGPS2 Missense_Mutation p.S500Y 0.26 deleterious(0) benign(0.061) TCGA-AZ-4315-01 1 179079774 179079774 C T ABL2 Intron 0.34 TCGA-AZ-4315-01 1 179090761 179090761 T C ABL2 Missense_Mutation p.Y310C 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 1 179322762 179322762 C T SOAT1 Missense_Mutation p.R547C 0.33 deleterious(0) possibly_damaging(0.556) TCGA-AZ-4315-01 1 179363168 179363168 G T AXDND1 Nonsense_Mutation p.E332* 0.31 TCGA-AZ-4315-01 1 179437592 179437592 C A AXDND1 Missense_Mutation p.L605I 0.23 tolerated(0.11) possibly_damaging(0.636) TCGA-AZ-4315-01 1 179526313 179526313 C T NPHS2 Missense_Mutation p.R196Q 0.33 tolerated(0.14) benign(0.43) TCGA-AZ-4315-01 1 179834187 179834187 C T IFRG15 Missense_Mutation p.R42H 0.38 deleterious_low_confidence(0.03) benign(0.068) TCGA-AZ-4315-01 1 179858477 179858477 C T TOR1AIP1 Nonsense_Mutation p.R195* 0.34 TCGA-AZ-4315-01 1 180471455 180471455 T C ACBD6 5'UTR 0.27 TCGA-AZ-4315-01 1 181452841 181452841 C T CACNA1E 5'Flank 0.20 TCGA-AZ-4315-01 1 18149715 18149715 G A ACTL8 Missense_Mutation p.R71H 0.28 deleterious(0.04) benign(0.148) TCGA-AZ-4315-01 1 181686260 181686260 T C CACNA1E Silent p.S449S 0.41 TCGA-AZ-4315-01 1 181701704 181701704 C T CACNA1E Missense_Mutation p.R828W 0.16 deleterious(0.01) possibly_damaging(0.689) TCGA-AZ-4315-01 1 182026236 182026236 C T ZNF648 Missense_Mutation p.E304K 0.36 deleterious(0.04) probably_damaging(0.989) TCGA-AZ-4315-01 1 182026506 182026506 C T ZNF648 Missense_Mutation p.A214T 0.32 tolerated(0.23) benign(0.036) TCGA-AZ-4315-01 1 182458174 182458174 G T RGSL1 Missense_Mutation p.E518D 0.24 tolerated(0.09) benign(0.012) TCGA-AZ-4315-01 1 182509395 182509395 A G RGSL1 Silent p.A836A 0.26 TCGA-AZ-4315-01 1 182545478 182545479 - T RNASEL Frame_Shift_Ins p.R651Kfs*11 0.25 TCGA-AZ-4315-01 1 183084751 183084751 C T LAMC1 Missense_Mutation p.S436F 0.29 deleterious(0) probably_damaging(0.939) TCGA-AZ-4315-01 1 183895354 183895354 G A RGL1 Silent p.R780R 0.36 TCGA-AZ-4315-01 1 183895366 183895366 G A RGL1 Silent p.T784T 0.35 TCGA-AZ-4315-01 1 184703708 184703708 C T EDEM3 Missense_Mutation p.D139N 0.32 deleterious(0.04) probably_damaging(0.987) TCGA-AZ-4315-01 1 185121027 185121027 C A TRMT1L Missense_Mutation p.E92D 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-AZ-4315-01 1 185144184 185144184 G A SWT1 Missense_Mutation p.R302Q 0.28 tolerated(0.58) benign(0.116) TCGA-AZ-4315-01 1 185276173 185276173 T G IVNS1ABP Silent p.G210G 0.33 TCGA-AZ-4315-01 1 185703908 185703908 G T HMCN1 5'UTR 0.22 TCGA-AZ-4315-01 1 186023046 186023046 G A HMCN1 Missense_Mutation p.A2264T 0.35 possibly_damaging(0.875) TCGA-AZ-4315-01 1 186062701 186062701 G A HMCN1 Missense_Mutation p.A3366T 0.33 probably_damaging(0.998) TCGA-AZ-4315-01 1 186081960 186081960 G A HMCN1 Missense_Mutation p.R3669Q 0.34 benign(0.254) TCGA-AZ-4315-01 1 186083128 186083128 G A HMCN1 Missense_Mutation p.G3717R 0.33 benign(0.006) TCGA-AZ-4315-01 1 186083988 186083988 T G HMCN1 Missense_Mutation p.S3772A 0.23 benign(0.009) TCGA-AZ-4315-01 1 186089149 186089149 A G HMCN1 Missense_Mutation p.N4034S 0.34 benign(0.001) TCGA-AZ-4315-01 1 186147818 186147818 G A HMCN1 Missense_Mutation p.R5405K 0.36 benign(0) TCGA-AZ-4315-01 1 186159046 186159046 G A HMCN1 3'UTR 0.33 TCGA-AZ-4315-01 1 186275455 186275455 G T PRG4 Missense_Mutation p.D202Y 0.39 probably_damaging(0.994) TCGA-AZ-4315-01 1 186275673 186275673 G A PRG4 Silent p.T274T 0.36 TCGA-AZ-4315-01 1 186275946 186275946 G A PRG4 Silent p.E365E 0.34 TCGA-AZ-4315-01 1 186282726 186282726 C A TPR 3'UTR 0.41 TCGA-AZ-4315-01 1 186915792 186915792 G A PLA2G4A Missense_Mutation p.E353K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 18810471 18810471 C A KLHDC7A 3'UTR 0.28 TCGA-AZ-4315-01 1 18810478 18810478 T G KLHDC7A 3'UTR 0.26 TCGA-AZ-4315-01 1 190067120 190067120 G T BRINP3 3'UTR 0.28 TCGA-AZ-4315-01 1 190067183 190067183 T C BRINP3 Missense_Mutation p.T756A 0.25 tolerated(0.8) benign(0) TCGA-AZ-4315-01 1 190067521 190067521 C T BRINP3 Missense_Mutation p.S643N 0.34 deleterious(0.01) benign(0.272) TCGA-AZ-4315-01 1 19166611 19166611 C T TAS1R2 Missense_Mutation p.A668T 0.30 deleterious(0.03) possibly_damaging(0.775) TCGA-AZ-4315-01 1 192127683 192127683 T G RGS18 5'UTR 0.32 TCGA-AZ-4315-01 1 192127873 192127873 G T RGS18 Nonsense_Mutation p.E36* 0.33 TCGA-AZ-4315-01 1 192321177 192321177 C T RGS21 Missense_Mutation p.A30V 0.16 tolerated(0.35) possibly_damaging(0.815) TCGA-AZ-4315-01 1 19237934 19237934 C T IFFO2 Missense_Mutation p.E421K 0.31 deleterious(0) probably_damaging(0.93) TCGA-AZ-4315-01 1 193099338 193099338 G A CDC73 Missense_Mutation p.R91Q 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 193149712 193149712 A C B3GALT2 Missense_Mutation p.I327M 0.30 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 1 19411102 19411102 G A UBR4 Silent p.F4968F 0.29 TCGA-AZ-4315-01 1 19431399 19431399 G T UBR4 Intron 0.43 TCGA-AZ-4315-01 1 19439079 19439079 G T UBR4 Missense_Mutation p.L3914I 0.32 possibly_damaging(0.899) TCGA-AZ-4315-01 1 19455499 19455499 G A UBR4 Silent p.G2992G 0.31 TCGA-AZ-4315-01 1 19479807 19479807 T C UBR4 Missense_Mutation p.T2274A 0.44 benign(0) TCGA-AZ-4315-01 1 196274462 196274462 G T KCNT2 Missense_Mutation p.L833I 0.41 tolerated(0.28) possibly_damaging(0.872) TCGA-AZ-4315-01 1 196648752 196648752 G T CFH Splice_Site p.X207_splice 0.09 TCGA-AZ-4315-01 1 19665789 19665789 C A CAPZB 3'UTR 0.43 TCGA-AZ-4315-01 1 19670916 19670916 T C CAPZB Missense_Mutation p.K223E 0.31 deleterious(0.01) benign(0.273) TCGA-AZ-4315-01 1 196795974 196795974 C A CFHR1 Missense_Mutation p.P90H 0.69 tolerated(0.05) probably_damaging(0.999) TCGA-AZ-4315-01 1 196799633 196799633 C A CFHR1 Missense_Mutation p.S204Y 0.09 deleterious(0.01) probably_damaging(0.989) TCGA-AZ-4315-01 1 196918651 196918651 T G CFHR2 Missense_Mutation p.F42C 0.26 deleterious(0.04) probably_damaging(0.987) TCGA-AZ-4315-01 1 197070292 197070292 A G ASPM Missense_Mutation p.S2697P 0.36 deleterious(0.02) probably_damaging(0.949) TCGA-AZ-4315-01 1 197070837 197070837 C T ASPM Missense_Mutation p.R2515Q 0.38 deleterious(0.02) benign(0.271) TCGA-AZ-4315-01 1 197070937 197070937 T G ASPM Silent p.R2482R 0.32 TCGA-AZ-4315-01 1 197072215 197072215 C T ASPM Missense_Mutation p.A2056T 0.29 tolerated(0.23) possibly_damaging(0.58) TCGA-AZ-4315-01 1 197111486 197111486 C A ASPM Missense_Mutation p.E632D 0.38 tolerated(0.07) benign(0.201) TCGA-AZ-4315-01 1 197128371 197128371 T G ZBTB41 3'UTR 0.31 TCGA-AZ-4315-01 1 197129054 197129054 C T ZBTB41 Missense_Mutation p.R722Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 197169565 197169565 C A ZBTB41 Missense_Mutation p.K13N 0.12 deleterious_low_confidence(0.01) benign(0.063) TCGA-AZ-4315-01 1 197390141 197390141 G A CRB1 Missense_Mutation p.E395K 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-AZ-4315-01 1 197611856 197611856 C T DENND1B Silent p.S219S 0.32 TCGA-AZ-4315-01 1 197704873 197704873 C T DENND1B Intron 0.38 TCGA-AZ-4315-01 1 197886951 197886951 T C LHX9 5'UTR 0.43 TCGA-AZ-4315-01 1 198608361 198608361 C T PTPRC 5'UTR 0.27 TCGA-AZ-4315-01 1 198687417 198687417 G T PTPRC Missense_Mutation p.D549Y 0.38 tolerated(0.08) benign(0.009) TCGA-AZ-4315-01 1 198723454 198723454 C T PTPRC Missense_Mutation p.A1189V 0.37 deleterious(0.01) possibly_damaging(0.684) TCGA-AZ-4315-01 1 198828061 198828061 G A MIR181B1 RNA 0.23 TCGA-AZ-4315-01 1 19969886 19969886 A G NBL1 Silent p.G27G 0.25 TCGA-AZ-4315-01 1 199996953 199996953 A C NR5A2 5'UTR 0.30 TCGA-AZ-4315-01 1 200613607 200613607 C T DDX59 Silent p.A545A 0.30 TCGA-AZ-4315-01 1 200619656 200619656 C A DDX59 Missense_Mutation p.R404I 0.31 tolerated(0.43) possibly_damaging(0.459) TCGA-AZ-4315-01 1 200818803 200818803 C A CAMSAP2 Missense_Mutation p.S969Y 0.30 deleterious(0.04) probably_damaging(0.967) TCGA-AZ-4315-01 1 200843070 200843070 C T GPR25 Missense_Mutation p.A302V 0.35 tolerated(0.62) benign(0.184) TCGA-AZ-4315-01 1 201020126 201020126 G A CACNA1S Missense_Mutation p.L1367F 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-AZ-4315-01 1 201031161 201031161 G A CACNA1S Silent p.R988R 0.31 TCGA-AZ-4315-01 1 201081417 201081417 C A CACNA1S Missense_Mutation p.K17N 0.48 deleterious(0.01) probably_damaging(0.984) TCGA-AZ-4315-01 1 20140749 20140749 C A RNF186 3'UTR 0.19 TCGA-AZ-4315-01 1 201750143 201750143 C T NAV1 Missense_Mutation p.R457C 0.26 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 1 201858644 201858644 T G SHISA4 Missense_Mutation p.F49V 0.31 tolerated(0.32) possibly_damaging(0.849) TCGA-AZ-4315-01 1 201915446 201915446 C T LMOD1 Missense_Mutation p.R8H 0.32 benign(0.209) TCGA-AZ-4315-01 1 201981526 201981526 G T ELF3 Missense_Mutation p.G147V 0.24 tolerated(0.41) possibly_damaging(0.511) TCGA-AZ-4315-01 1 20232953 20232953 T C OTUD3 Silent p.G288G 0.30 TCGA-AZ-4315-01 1 202396302 202396302 G A PPP1R12B Missense_Mutation p.R279Q 0.24 deleterious(0.02) possibly_damaging(0.541) TCGA-AZ-4315-01 1 202399863 202399863 G A PPP1R12B Missense_Mutation p.R309Q 0.33 deleterious(0.02) possibly_damaging(0.582) TCGA-AZ-4315-01 1 202411697 202411697 A C PPP1R12B Missense_Mutation p.K555T 0.31 tolerated(0.08) benign(0.118) TCGA-AZ-4315-01 1 202842485 202842485 G A RP11-480I12.7 RNA 0.39 TCGA-AZ-4315-01 1 202861788 202861788 C A KLHL12 Splice_Site p.X527_splice 0.29 TCGA-AZ-4315-01 1 202910534 202910534 T G ADIPOR1 3'UTR 0.50 TCGA-AZ-4315-01 1 202910599 202910599 C A ADIPOR1 3'UTR 0.35 TCGA-AZ-4315-01 1 203023071 203023071 C A PPFIA4 Missense_Mutation p.A98D 0.25 deleterious(0) possibly_damaging(0.847) TCGA-AZ-4315-01 1 203037706 203037706 G A PPFIA4 Missense_Mutation p.D586N 0.41 deleterious(0) possibly_damaging(0.857) TCGA-AZ-4315-01 1 203134708 203134708 G A ADORA1 Missense_Mutation p.D221N 0.24 tolerated(0.28) probably_damaging(0.986) TCGA-AZ-4315-01 1 203276500 203276500 C T BTG2 Silent p.C137C 0.27 TCGA-AZ-4315-01 1 203468789 203468789 G T OPTC Missense_Mutation p.R181M 0.28 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 1 203671198 203671198 C T ATP2B4 Missense_Mutation p.R310C 0.37 deleterious(0.02) benign(0.019) TCGA-AZ-4315-01 1 203743974 203743974 G T LAX1 3'UTR 0.33 TCGA-AZ-4315-01 1 204945893 204945893 G T NFASC Missense_Mutation p.D601Y 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-AZ-4315-01 1 205028276 205028276 C T CNTN2 Silent p.F184F 0.46 TCGA-AZ-4315-01 1 205041232 205041232 C A CNTN2 Missense_Mutation p.P901H 0.15 deleterious(0.05) probably_damaging(0.98) TCGA-AZ-4315-01 1 205041248 205041248 G A CNTN2 Silent p.T906T 0.41 TCGA-AZ-4315-01 1 205083995 205083995 C T RBBP5 Missense_Mutation p.R47Q 0.16 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 1 20518401 20518401 A C UBXN10 3'UTR 0.34 TCGA-AZ-4315-01 1 205555174 205555174 G A MFSD4 Missense_Mutation p.A330T 0.26 tolerated(0.06) benign(0.022) TCGA-AZ-4315-01 1 205585484 205585484 T G ELK4 3'UTR 0.30 TCGA-AZ-4315-01 1 205588846 205588846 A G ELK4 Intron 0.26 TCGA-AZ-4315-01 1 205693065 205693065 G T NUCKS1 Missense_Mutation p.S73Y 0.34 deleterious(0.02) probably_damaging(0.919) TCGA-AZ-4315-01 1 205801768 205801768 T C PM20D1 Missense_Mutation p.T415A 0.30 tolerated(0.05) benign(0.393) TCGA-AZ-4315-01 1 205884365 205884365 A G SLC26A9 Intron 0.28 TCGA-AZ-4315-01 1 20656789 20656789 G A VWA5B1 Silent p.P457P 0.35 TCGA-AZ-4315-01 1 206681245 206681245 C T RASSF5 Missense_Mutation p.R104W 0.55 tolerated(0.18) probably_damaging(0.993) TCGA-AZ-4315-01 1 20669597 20669597 C T VWA5B1 Silent p.F779F 0.16 TCGA-AZ-4315-01 1 206810276 206810276 G A DYRK3 Intron 0.24 TCGA-AZ-4315-01 1 206821748 206821748 T G DYRK3 Missense_Mutation p.L402R 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 207013239 207013239 C T IL19 Silent p.Y123Y 0.33 TCGA-AZ-4315-01 1 207086359 207086359 T C FAIM3 Silent p.P134P 0.41 TCGA-AZ-4315-01 1 207131862 207131862 C T FCAMR Silent p.%3D 0.26 TCGA-AZ-4315-01 1 207134158 207134158 G A FCAMR Missense_Mutation p.P355S 0.31 deleterious(0.01) possibly_damaging(0.773) TCGA-AZ-4315-01 1 207135631 207135631 G A FCAMR Silent p.I193I 0.30 TCGA-AZ-4315-01 1 207195532 207195532 G T C1orf116 Missense_Mutation p.S526Y 0.41 deleterious(0.03) benign(0.373) TCGA-AZ-4315-01 1 207200908 207200908 G A C1orf116 Silent p.G12G 0.41 TCGA-AZ-4315-01 1 207222634 207222634 G T YOD1 Missense_Mutation p.L260M 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 1 207651375 207651375 G A CR2 Silent p.S1016S 0.29 TCGA-AZ-4315-01 1 207697017 207697017 G A CR1 Silent p.E183E 0.31 TCGA-AZ-4315-01 1 207790017 207790017 C T CR1 Silent p.C2253C 0.37 TCGA-AZ-4315-01 1 207790065 207790065 C T CR1 Silent p.S2269S 0.44 TCGA-AZ-4315-01 1 207818526 207818526 T G CR1L 5'UTR 0.44 TCGA-AZ-4315-01 1 208062109 208062109 G A CD34 Missense_Mutation p.S297L 0.37 deleterious(0) benign(0.318) TCGA-AZ-4315-01 1 20827342 20827342 G A MUL1 Silent p.S300S 0.37 TCGA-AZ-4315-01 1 209605495 209605495 C T MIR205HG Intron 0.29 TCGA-AZ-4315-01 1 209788721 209788721 C T LAMB3 Silent p.Q1138Q 0.50 TCGA-AZ-4315-01 1 20987449 20987449 C A DDOST Missense_Mutation p.D81Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 210008500 210008500 G A DIEXF Missense_Mutation p.E215K 0.29 tolerated(0.35) benign(0.007) TCGA-AZ-4315-01 1 210404990 210404990 C A SERTAD4 5'Flank 0.30 TCGA-AZ-4315-01 1 210856957 210856957 G A KCNH1 Missense_Mutation p.S879L 0.34 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-AZ-4315-01 1 21100176 21100176 G T HP1BP3 Intron 0.21 TCGA-AZ-4315-01 1 211956772 211956772 G A LPGAT1 Nonsense_Mutation p.R176* 0.36 TCGA-AZ-4315-01 1 21205991 21205991 C T EIF4G3 Missense_Mutation p.S766N 0.38 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 21205995 21205995 G A EIF4G3 Nonsense_Mutation p.R765* 0.18 TCGA-AZ-4315-01 1 212141869 212141869 G A INTS7 Missense_Mutation p.R666C 0.37 deleterious(0) probably_damaging(0.983) TCGA-AZ-4315-01 1 212276500 212276500 T C DTL 3'UTR 0.40 TCGA-AZ-4315-01 1 212521772 212521772 A C PPP2R5A Missense_Mutation p.K269T 0.38 deleterious(0.03) possibly_damaging(0.877) TCGA-AZ-4315-01 1 212560299 212560299 G A TMEM206 Missense_Mutation p.R154C 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 1 212792810 212792810 T C ATF3 Silent p.C153C 0.26 TCGA-AZ-4315-01 1 212870379 212870379 C T BATF3 Missense_Mutation p.R40Q 0.46 tolerated(0.23) probably_damaging(0.998) TCGA-AZ-4315-01 1 213161932 213161932 C T VASH2 3'UTR 0.37 TCGA-AZ-4315-01 1 213178685 213178685 C T ANGEL2 Missense_Mutation p.R275H 0.19 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 213178690 213178690 G T ANGEL2 Missense_Mutation p.F273L 0.21 deleterious(0) probably_damaging(0.955) TCGA-AZ-4315-01 1 21415668 21415668 C T EIF4G3 5'UTR 0.35 TCGA-AZ-4315-01 1 214171101 214171101 G A PROX1 Missense_Mutation p.R408H 0.26 tolerated(0.13) possibly_damaging(0.805) TCGA-AZ-4315-01 1 214549593 214549593 T C PTPN14 Missense_Mutation p.N959S 0.30 tolerated(0.13) benign(0.003) TCGA-AZ-4315-01 1 214638093 214638093 C A PTPN14 Missense_Mutation p.K18N 0.33 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 214638216 214638216 C T PTPN14 5'UTR 0.36 TCGA-AZ-4315-01 1 214705490 214705490 C T PTPN14 Intron 0.62 TCGA-AZ-4315-01 1 214815711 214815711 A C CENPF Missense_Mutation p.N1344H 0.35 benign(0.01) TCGA-AZ-4315-01 1 21554507 21554507 G A ECE1 Silent p.N566N 0.30 TCGA-AZ-4315-01 1 215853628 215853628 A C USH2A Missense_Mutation p.L4053V 0.29 benign(0.102) TCGA-AZ-4315-01 1 215933091 215933091 T C USH2A Silent p.Q3714Q 0.09 TCGA-AZ-4315-01 1 215960058 215960058 G A USH2A Silent p.A3447A 0.34 TCGA-AZ-4315-01 1 216495287 216495287 C T USH2A Missense_Mutation p.D528N 0.32 possibly_damaging(0.573) TCGA-AZ-4315-01 1 216591893 216591893 C A USH2A Missense_Mutation p.R205I 0.33 possibly_damaging(0.795) TCGA-AZ-4315-01 1 216850442 216850442 C T ESRRG Missense_Mutation p.A155T 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-4315-01 1 217955537 217955537 G A SPATA17 Missense_Mutation p.E249K 0.30 deleterious(0) possibly_damaging(0.781) TCGA-AZ-4315-01 1 21887156 21887156 G A ALPL Silent p.A33A 0.36 TCGA-AZ-4315-01 1 220232070 220232070 G A BPNT1 3'UTR 0.40 TCGA-AZ-4315-01 1 220273854 220273854 G A IARS2 Missense_Mutation p.R138Q 0.31 deleterious(0) probably_damaging(0.954) TCGA-AZ-4315-01 1 220275895 220275895 T C IARS2 Missense_Mutation p.Y270H 0.26 deleterious(0.04) possibly_damaging(0.708) TCGA-AZ-4315-01 1 22062982 22062982 C A USP48 Missense_Mutation p.K376N 0.32 deleterious(0) benign(0.403) TCGA-AZ-4315-01 1 220805570 220805570 G A MARK1 Missense_Mutation p.R346Q 0.29 tolerated(0.15) benign(0.008) TCGA-AZ-4315-01 1 220835216 220835216 C A MARK1 Missense_Mutation p.S699Y 0.34 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 1 220935086 220935086 G A MARC2 Missense_Mutation p.R178K 0.37 tolerated(0.09) probably_damaging(0.996) TCGA-AZ-4315-01 1 221053716 221053716 G T HLX Missense_Mutation p.D173Y 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 1 222716986 222716986 G T HHIPL2 Missense_Mutation p.F289L 0.33 tolerated(0.62) probably_damaging(0.988) TCGA-AZ-4315-01 1 222802186 222802186 G A MIA3 Missense_Mutation p.E542K 0.30 tolerated(0.14) possibly_damaging(0.756) TCGA-AZ-4315-01 1 222805540 222805540 G A MIA3 Missense_Mutation p.R1068Q 0.33 tolerated(1) benign(0) TCGA-AZ-4315-01 1 222828007 222828007 G T MIA3 Missense_Mutation p.K1493N 0.38 deleterious(0.03) possibly_damaging(0.894) TCGA-AZ-4315-01 1 222828062 222828062 G T MIA3 Nonsense_Mutation p.E1512* 0.32 TCGA-AZ-4315-01 1 222838716 222838716 G A MIA3 Missense_Mutation p.D1827N 0.32 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 1 222838878 222838878 C T MIA3 Missense_Mutation p.P1881S 0.26 tolerated(0.05) benign(0.064) TCGA-AZ-4315-01 1 222860301 222860301 G T AIDA Missense_Mutation p.S144Y 0.36 deleterious(0.01) possibly_damaging(0.804) TCGA-AZ-4315-01 1 223116360 223116360 C A DISP1 Silent p.S65S 0.22 TCGA-AZ-4315-01 1 223176857 223176857 C T DISP1 Silent p.F706F 0.26 TCGA-AZ-4315-01 1 223177867 223177867 C T DISP1 Missense_Mutation p.S1043L 0.32 deleterious(0) probably_damaging(0.969) TCGA-AZ-4315-01 1 223285313 223285313 G A TLR5 Missense_Mutation p.S354L 0.19 tolerated(0.64) benign(0.004) TCGA-AZ-4315-01 1 223441998 223441998 G A SUSD4 Silent p.I127I 0.28 TCGA-AZ-4315-01 1 22417932 22417932 G T CDC42 Missense_Mutation p.K166N 0.25 deleterious(0.01) possibly_damaging(0.561) TCGA-AZ-4315-01 1 22418084 22418084 G T CDC42 3'UTR 0.20 TCGA-AZ-4315-01 1 224377744 224377744 C T DEGS1 Missense_Mutation p.T183M 0.27 deleterious(0.04) possibly_damaging(0.849) TCGA-AZ-4315-01 1 224380236 224380236 T G DEGS1 3'UTR 0.42 TCGA-AZ-4315-01 1 225394707 225394707 C T DNAH14 Missense_Mutation p.S1648L 0.30 deleterious(0) benign(0.307) TCGA-AZ-4315-01 1 225459761 225459761 C T DNAH14 Nonsense_Mutation p.R2603* 0.36 TCGA-AZ-4315-01 1 225521107 225521107 C T DNAH14 Missense_Mutation p.R3234C 0.39 probably_damaging(1) TCGA-AZ-4315-01 1 225607048 225607048 T G LBR Missense_Mutation p.K186T 0.31 tolerated(0.23) benign(0.004) TCGA-AZ-4315-01 1 225702385 225702385 G T ENAH Missense_Mutation p.F377L 0.35 tolerated_low_confidence(0.26) benign(0.042) TCGA-AZ-4315-01 1 225977293 225977293 G A SRP9 3'UTR 0.36 TCGA-AZ-4315-01 1 226037685 226037685 C T TMEM63A Missense_Mutation p.A667T 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 226049946 226049946 T C TMEM63A Missense_Mutation p.T353A 0.39 deleterious(0) possibly_damaging(0.906) TCGA-AZ-4315-01 1 226128747 226128747 G A LEFTY2 Silent p.L32L 0.40 TCGA-AZ-4315-01 1 226438547 226438547 T G LIN9 Missense_Mutation p.E387A 0.36 deleterious(0) probably_damaging(0.974) TCGA-AZ-4315-01 1 226564878 226564878 G A PARP1 Silent p.N624N 0.28 TCGA-AZ-4315-01 1 226567282 226567282 G T PARP1 Missense_Mutation p.P535H 0.35 deleterious(0) possibly_damaging(0.492) TCGA-AZ-4315-01 1 226834906 226834906 G A ITPKB Silent p.F736F 0.35 TCGA-AZ-4315-01 1 226924069 226924069 C T ITPKB Missense_Mutation p.R364H 0.35 tolerated_low_confidence(0.57) benign(0) TCGA-AZ-4315-01 1 226924618 226924618 C T ITPKB Missense_Mutation p.R181H 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 227182673 227182673 C T CDC42BPA Missense_Mutation p.A1627T 0.23 tolerated(0.56) benign(0.002) TCGA-AZ-4315-01 1 227203844 227203844 A C CDC42BPA Missense_Mutation p.N1563K 0.35 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 1 227211045 227211045 G A CDC42BPA Nonsense_Mutation p.R1477* 0.43 TCGA-AZ-4315-01 1 227333226 227333226 C T CDC42BPA Silent p.S369S 0.35 TCGA-AZ-4315-01 1 227843187 227843187 A C ZNF678 Missense_Mutation p.K412N 0.35 deleterious(0.01) probably_damaging(0.922) TCGA-AZ-4315-01 1 228033934 228033934 C T PRSS38 3'UTR 0.30 TCGA-AZ-4315-01 1 228210508 228210508 A G WNT3A Missense_Mutation p.K71R 0.35 tolerated(0.21) benign(0.047) TCGA-AZ-4315-01 1 228347291 228347291 A C GJC2 3'UTR 0.31 TCGA-AZ-4315-01 1 228461987 228461987 G A OBSCN Missense_Mutation p.R2217H 0.32 benign(0.075) TCGA-AZ-4315-01 1 228480352 228480352 G A OBSCN Missense_Mutation p.D4007N 0.37 benign(0.145) TCGA-AZ-4315-01 1 228481193 228481193 A G OBSCN Silent p.R4098R 0.27 TCGA-AZ-4315-01 1 228481940 228481940 C T OBSCN Missense_Mutation p.A4169V 0.31 benign(0.091) TCGA-AZ-4315-01 1 228557698 228557698 G A OBSCN Missense_Mutation p.V7632I 0.33 benign(0.012) TCGA-AZ-4315-01 1 228584695 228584695 G A TRIM11 Missense_Mutation p.T271I 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-AZ-4315-01 1 228596898 228596898 C T TRIM17 Silent p.Q286Q 0.28 TCGA-AZ-4315-01 1 228879198 228879198 C T RHOU Missense_Mutation p.S163L 0.33 tolerated(0.78) benign(0.431) TCGA-AZ-4315-01 1 228879634 228879634 C A RHOU 3'UTR 0.27 TCGA-AZ-4315-01 1 229441002 229441002 C A SPHAR Missense_Mutation p.L41I 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.567) TCGA-AZ-4315-01 1 229567868 229567868 G A ACTA1 Silent p.N227N 0.25 TCGA-AZ-4315-01 1 230472879 230472879 C T PGBD5 Silent p.T281T 0.34 TCGA-AZ-4315-01 1 230846407 230846407 C A AGT Missense_Mutation p.D64Y 0.24 deleterious(0.01) benign(0.096) TCGA-AZ-4315-01 1 230846475 230846475 A G AGT Missense_Mutation p.F41S 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 231132996 231132996 C T ARV1 Missense_Mutation p.S268F 0.34 tolerated_low_confidence(0.06) benign(0.429) TCGA-AZ-4315-01 1 231339625 231339625 C T TRIM67 Missense_Mutation p.P516L 0.45 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 231360129 231360129 A C C1orf131 Missense_Mutation p.L260V 0.34 tolerated(0.05) possibly_damaging(0.801) TCGA-AZ-4315-01 1 231506425 231506425 C T EGLN1 Missense_Mutation p.R344Q 0.19 tolerated(0.18) possibly_damaging(0.517) TCGA-AZ-4315-01 1 231931028 231931028 G T DISC1 Nonsense_Mutation p.E559* 0.33 TCGA-AZ-4315-01 1 23233237 23233237 G A EPHB2 Silent p.K642K 0.28 TCGA-AZ-4315-01 1 232941004 232941004 G A MAP10 Missense_Mutation p.A79T 0.26 possibly_damaging(0.682) TCGA-AZ-4315-01 1 232941348 232941348 C T MAP10 Silent p.R193R 0.39 TCGA-AZ-4315-01 1 232944010 232944010 T G MAP10 3'UTR 0.32 TCGA-AZ-4315-01 1 232944711 232944711 A C MAP10 3'UTR 0.32 TCGA-AZ-4315-01 1 233482358 233482358 G A MLK4 Missense_Mutation p.D326N 0.20 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 23417865 23417865 C T LUZP1 Missense_Mutation p.E964K 0.34 deleterious(0) possibly_damaging(0.638) TCGA-AZ-4315-01 1 234584248 234584248 C T TARBP1 Missense_Mutation p.E647K 0.14 deleterious(0.03) benign(0.156) TCGA-AZ-4315-01 1 235826191 235826191 A C LYST 3'UTR 0.42 TCGA-AZ-4315-01 1 235907315 235907315 A C LYST Missense_Mutation p.I2705M 0.36 tolerated(1) benign(0.001) TCGA-AZ-4315-01 1 235969317 235969317 G T LYST Missense_Mutation p.S1040Y 0.32 tolerated_low_confidence(0.07) possibly_damaging(0.602) TCGA-AZ-4315-01 1 236187381 236187381 C T NID1 Missense_Mutation p.R706Q 0.29 tolerated(0.12) benign(0.014) TCGA-AZ-4315-01 1 236389777 236389777 C A ERO1LB Nonsense_Mutation p.E282* 0.31 TCGA-AZ-4315-01 1 236399099 236399099 C T ERO1LB Silent p.A221A 0.26 TCGA-AZ-4315-01 1 236399118 236399118 C T ERO1LB Missense_Mutation p.R215H 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 1 236711336 236711336 G T LGALS8 Nonsense_Mutation p.E319* 0.25 TCGA-AZ-4315-01 1 236906299 236906299 A C ACTN2 Missense_Mutation p.E404A 0.27 tolerated(0.41) benign(0.06) TCGA-AZ-4315-01 1 237205842 237205842 C T RYR2 Silent p.G7G 0.36 TCGA-AZ-4315-01 1 237780781 237780781 G T RYR2 Nonsense_Mutation p.E1971* 0.27 TCGA-AZ-4315-01 1 237791319 237791319 C T RYR2 Missense_Mutation p.R2127W 0.36 probably_damaging(1) TCGA-AZ-4315-01 1 237919615 237919615 C A RYR2 Missense_Mutation p.L3725I 0.28 possibly_damaging(0.821) TCGA-AZ-4315-01 1 237947421 237947421 G A RYR2 Missense_Mutation p.E4137K 0.41 probably_damaging(0.992) TCGA-AZ-4315-01 1 237961360 237961360 C A RYR2 Missense_Mutation p.F4660L 0.42 possibly_damaging(0.483) TCGA-AZ-4315-01 1 24022315 24022315 G A RPL11 Missense_Mutation p.A142T 0.24 tolerated(0.19) benign(0.02) TCGA-AZ-4315-01 1 240286627 240286627 G A FMN2 Silent p.T588T 0.24 TCGA-AZ-4315-01 1 240969546 240969546 A C RGS7 Missense_Mutation p.F388C 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 240976985 240976985 G T RGS7 Missense_Mutation p.L297I 0.34 tolerated(0.82) benign(0.186) TCGA-AZ-4315-01 1 24105940 24105940 G T PITHD1 Missense_Mutation p.D71Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 1 24130855 24130855 C T HMGCL Intron 0.31 TCGA-AZ-4315-01 1 24144014 24144014 G T HMGCL Silent p.L68L 0.34 TCGA-AZ-4315-01 1 241756401 241756401 A C KMO 3'UTR 0.30 TCGA-AZ-4315-01 1 241815665 241815665 G T WDR64 5'UTR 0.25 TCGA-AZ-4315-01 1 241946597 241946597 G A WDR64 Nonsense_Mutation p.W863* 0.25 TCGA-AZ-4315-01 1 24201664 24201664 T C CNR2 Silent p.G148G 0.37 TCGA-AZ-4315-01 1 242511521 242511521 G T PLD5 Silent p.I71I 0.34 TCGA-AZ-4315-01 1 243303420 243303420 G A CEP170 Intron 0.29 TCGA-AZ-4315-01 1 243328801 243328801 G A CEP170 Missense_Mutation p.P821S 0.24 tolerated(0.76) benign(0.001) TCGA-AZ-4315-01 1 243329334 243329334 C T CEP170 Missense_Mutation p.R643Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 1 243456444 243456444 G A SDCCAG8 Missense_Mutation p.E200K 0.38 tolerated(0.08) benign(0.247) TCGA-AZ-4315-01 1 243716137 243716137 T G AKT3 Missense_Mutation p.K353Q 0.36 tolerated(0.24) benign(0.372) TCGA-AZ-4315-01 1 243800958 243800958 T - AKT3 Frame_Shift_Del p.K172Nfs*5 0.29 TCGA-AZ-4315-01 1 244219699 244219699 A C ZBTB18 3'UTR 0.26 TCGA-AZ-4315-01 1 244541861 244541861 G A C1orf100 Missense_Mutation p.R82Q 0.28 tolerated(0.82) benign(0.011) TCGA-AZ-4315-01 1 244574619 244574619 G A ADSS Nonsense_Mutation p.R430* 0.29 TCGA-AZ-4315-01 1 245005348 245005348 T G COX20 Missense_Mutation p.F49V 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 245022640 245022640 T G HNRNPU Missense_Mutation p.K352Q 0.27 deleterious(0.04) possibly_damaging(0.472) TCGA-AZ-4315-01 1 245849092 245849092 T C KIF26B Missense_Mutation p.I936T 0.26 deleterious(0) unknown(0) TCGA-AZ-4315-01 1 245849264 245849264 C T KIF26B Silent p.G993G 0.32 TCGA-AZ-4315-01 1 245850450 245850450 A G KIF26B Missense_Mutation p.T1389A 0.28 tolerated(0.05) unknown(0) TCGA-AZ-4315-01 1 245862267 245862267 G A KIF26B Missense_Mutation p.E2036K 0.35 tolerated(0.05) unknown(0) TCGA-AZ-4315-01 1 245865944 245865944 C A KIF26B 3'UTR 0.31 TCGA-AZ-4315-01 1 246754825 246754825 C A CNST 5'UTR 0.28 TCGA-AZ-4315-01 1 247076591 247076591 G T AHCTF1 Missense_Mutation p.L176I 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 1 247264504 247264504 A G ZNF669 Silent p.C189C 0.35 TCGA-AZ-4315-01 1 247322323 247322323 G T ZNF124 Missense_Mutation p.S68Y 0.34 tolerated(0.43) benign(0.211) TCGA-AZ-4315-01 1 247614814 247614814 G A OR2B11 Silent p.F157F 0.26 TCGA-AZ-4315-01 1 247655060 247655060 G A OR2W5 RNA 0.30 TCGA-AZ-4315-01 1 24766677 24766677 G A NIPAL3 Missense_Mutation p.A37T 0.39 tolerated(0.6) benign(0.07) TCGA-AZ-4315-01 1 247719730 247719730 G T GCSAML Missense_Mutation p.K17N 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-AZ-4315-01 1 247769682 247769682 C T OR2G3 Silent p.S265S 0.28 TCGA-AZ-4315-01 1 248059786 248059786 G A OR2W3 Missense_Mutation p.A300T 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 248112967 248112967 G A OR2L8 Missense_Mutation p.D270N 0.29 deleterious(0.01) possibly_damaging(0.595) TCGA-AZ-4315-01 1 248129182 248129182 C A OR2AK2 Missense_Mutation p.F183L 0.10 deleterious(0.04) benign(0.162) TCGA-AZ-4315-01 1 248202363 248202363 G A OR2L2 Missense_Mutation p.R265Q 0.29 tolerated(0.08) benign(0.089) TCGA-AZ-4315-01 1 248224795 248224795 A C OR2L3 Missense_Mutation p.K271T 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-AZ-4315-01 1 248263321 248263321 C A OR2L13 Missense_Mutation p.S215Y 0.30 tolerated(0.12) benign(0.279) TCGA-AZ-4315-01 1 248367063 248367063 G A OR2M3 Missense_Mutation p.E232K 0.31 tolerated(0.08) benign(0.248) TCGA-AZ-4315-01 1 248436761 248436761 T G OR2T33 Missense_Mutation p.D119A 0.21 deleterious(0) probably_damaging(0.95) TCGA-AZ-4315-01 1 248437111 248437111 C A OR2T33 Missense_Mutation p.E2D 0.32 tolerated(0.23) benign(0.012) TCGA-AZ-4315-01 1 248457973 248457973 A G OR2T12 Missense_Mutation p.L303P 0.29 deleterious(0.01) benign(0.019) TCGA-AZ-4315-01 1 248458301 248458301 C T OR2T12 Missense_Mutation p.E194K 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-AZ-4315-01 1 248512612 248512612 T C OR14C36 Missense_Mutation p.I179T 0.14 deleterious(0.01) benign(0.219) TCGA-AZ-4315-01 1 248525470 248525470 G T OR2T4 Missense_Mutation p.M196I 0.30 deleterious(0.01) benign(0.344) TCGA-AZ-4315-01 1 248616467 248616467 C T OR2T2 Silent p.R123R 0.17 TCGA-AZ-4315-01 1 248802194 248802194 G A OR2T35 Silent p.R122R 0.16 TCGA-AZ-4315-01 1 248813914 248813914 G A OR2T27 Missense_Mutation p.A91V 0.13 tolerated(0.06) benign(0.002) TCGA-AZ-4315-01 1 249141614 249141614 C T ZNF672 Silent p.C47C 0.49 TCGA-AZ-4315-01 1 24987217 24987217 A G SRRM1 Silent p.K441K 0.36 TCGA-AZ-4315-01 1 24997957 24997957 G A SRRM1 Silent p.K827K 0.32 TCGA-AZ-4315-01 1 25254143 25254143 G A RUNX3 Silent p.L135L 0.38 TCGA-AZ-4315-01 1 25291018 25291018 C T RUNX3 Silent p.P15P 0.29 TCGA-AZ-4315-01 1 25291054 25291054 C T RUNX3 Silent p.S3S 0.29 TCGA-AZ-4315-01 1 25549788 25549788 T C SYF2 Missense_Mutation p.K234R 0.35 deleterious(0.02) possibly_damaging(0.889) TCGA-AZ-4315-01 1 25655591 25655591 C A RHD 3'UTR 0.29 TCGA-AZ-4315-01 1 25718594 25718594 G A RHCE Silent p.F175F 0.30 TCGA-AZ-4315-01 1 25737911 25737911 C A RHCE Intron 0.29 TCGA-AZ-4315-01 1 25891695 25891695 C T LDLRAP1 Missense_Mutation p.S260L 0.31 deleterious(0) benign(0.391) TCGA-AZ-4315-01 1 26158444 26158444 C T MTFR1L Missense_Mutation p.A269V 0.32 tolerated(0.64) benign(0.1) TCGA-AZ-4315-01 1 26387773 26387773 T G TRIM63 Missense_Mutation p.K129Q 0.30 deleterious(0.02) possibly_damaging(0.803) TCGA-AZ-4315-01 1 26609374 26609374 A C UBXN11 Missense_Mutation p.L378V 0.32 deleterious(0) probably_damaging(0.974) TCGA-AZ-4315-01 1 26658052 26658052 G A AIM1L Silent p.G540G 0.44 TCGA-AZ-4315-01 1 26753017 26753017 T C LIN28A 3'UTR 0.36 TCGA-AZ-4315-01 1 26784279 26784279 T C DHDDS Intron 0.33 TCGA-AZ-4315-01 1 26801077 26801077 A G HMGN2 Silent p.V52V 0.28 TCGA-AZ-4315-01 1 27087570 27087570 C T ARID1A Missense_Mutation p.S715L 0.34 unknown(0) TCGA-AZ-4315-01 1 27434152 27434152 G A SLC9A1 Silent p.I423I 0.47 TCGA-AZ-4315-01 1 27684016 27684016 C G MAP3K6 Missense_Mutation p.A1045P 0.24 deleterious(0.01) possibly_damaging(0.513) TCGA-AZ-4315-01 1 27745457 27745457 T C WASF2 Missense_Mutation p.E88G 0.31 deleterious(0) unknown(0) TCGA-AZ-4315-01 1 27877005 27877005 A C AHDC1 Missense_Mutation p.I541S 0.32 deleterious(0) benign(0.402) TCGA-AZ-4315-01 1 28293080 28293080 G A XKR8 Missense_Mutation p.R186H 0.31 deleterious(0.01) probably_damaging(0.924) TCGA-AZ-4315-01 1 28319944 28319944 C A EYA3 Nonsense_Mutation p.E424* 0.29 TCGA-AZ-4315-01 1 28564058 28564058 C A ATPIF1 Intron 0.33 TCGA-AZ-4315-01 1 28598336 28598336 C T SESN2 Missense_Mutation p.T103M 0.33 tolerated(0.84) benign(0.003) TCGA-AZ-4315-01 1 28858370 28858370 C T RCC1 Silent p.G74G 0.32 TCGA-AZ-4315-01 1 28920700 28920700 C A RAB42 3'UTR 0.38 TCGA-AZ-4315-01 1 28920885 28920885 G A RAB42 3'UTR 0.25 TCGA-AZ-4315-01 1 29344857 29344857 G T EPB41 Nonsense_Mutation p.E343* 0.24 TCGA-AZ-4315-01 1 29359683 29359683 C T EPB41 Missense_Mutation p.R431C 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 29644358 29644358 G A PTPRU Silent p.P1214P 0.28 TCGA-AZ-4315-01 1 31810045 31810045 T C ZCCHC17 Missense_Mutation p.S50P 0.14 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 1 32198703 32198703 G A BAI2 Missense_Mutation p.A1165V 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 32202108 32202108 T C BAI2 Intron 0.35 TCGA-AZ-4315-01 1 32205216 32205216 G A BAI2 Missense_Mutation p.P730S 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 32280414 32280414 G T SPOCD1 Missense_Mutation p.S174Y 0.28 deleterious(0) possibly_damaging(0.596) TCGA-AZ-4315-01 1 32542820 32542820 G A TMEM39B Missense_Mutation p.R164H 0.29 deleterious(0.01) possibly_damaging(0.714) TCGA-AZ-4315-01 1 33087413 33087413 A C ZBTB8OS 3'UTR 0.31 TCGA-AZ-4315-01 1 33138398 33138398 C A RBBP4 Missense_Mutation p.H370N 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 3319546 3319546 T C PRDM16 Missense_Mutation p.F290L 0.26 deleterious(0.03) benign(0.317) TCGA-AZ-4315-01 1 3321430 3321430 G A PRDM16 Missense_Mutation p.E338K 0.25 tolerated(0.13) benign(0.415) TCGA-AZ-4315-01 1 33329548 33329548 C A FNDC5 3'UTR 0.26 TCGA-AZ-4315-01 1 33402228 33402228 T C RNF19B 3'UTR 0.64 TCGA-AZ-4315-01 1 33404043 33404043 C T RNF19B Missense_Mutation p.R567H 0.37 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 1 3348642 3348642 C T PRDM16 Missense_Mutation p.L1212F 0.31 tolerated(1) benign(0.003) TCGA-AZ-4315-01 1 33612585 33612585 A C TRIM62 3'UTR 0.50 TCGA-AZ-4315-01 1 33613274 33613274 G A TRIM62 Missense_Mutation p.S311L 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 33956622 33956622 T C ZSCAN20 Intron 0.42 TCGA-AZ-4315-01 1 33960273 33960273 G A ZSCAN20 Missense_Mutation p.D777N 0.21 tolerated(0.07) probably_damaging(0.993) TCGA-AZ-4315-01 1 33960964 33960964 G T ZSCAN20 Missense_Mutation p.R1007I 0.14 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 33988969 33988969 T C CSMD2 Missense_Mutation p.T3339A 0.33 tolerated(0.09) benign(0) TCGA-AZ-4315-01 1 34046380 34046380 G A CSMD2 Missense_Mutation p.R2456W 0.11 tolerated(0.09) probably_damaging(0.978) TCGA-AZ-4315-01 1 34046429 34046429 G T CSMD2 Missense_Mutation p.S2439R 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 34052729 34052729 G A CSMD2 Missense_Mutation p.P2301L 0.42 deleterious(0.03) benign(0.22) TCGA-AZ-4315-01 1 34191091 34191091 G A CSMD2 Missense_Mutation p.R812W 0.33 deleterious(0) probably_damaging(0.924) TCGA-AZ-4315-01 1 34208951 34208951 G A CSMD2 Silent p.G661G 0.33 TCGA-AZ-4315-01 1 34276442 34276442 G A CSMD2 Nonsense_Mutation p.R410* 0.27 TCGA-AZ-4315-01 1 34285430 34285430 G A CSMD2 Missense_Mutation p.S363F 0.26 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 1 34383779 34383779 G A CSMD2 Missense_Mutation p.T239I 0.36 deleterious(0.02) possibly_damaging(0.461) TCGA-AZ-4315-01 1 34684296 34684296 G A C1orf94 Silent p.S577S 0.30 TCGA-AZ-4315-01 1 35944742 35944742 C A KIAA0319L Missense_Mutation p.K246N 0.39 tolerated(0.35) benign(0.193) TCGA-AZ-4315-01 1 36186576 36186576 G A C1orf216 5'Flank 0.33 TCGA-AZ-4315-01 1 36202129 36202129 T C CLSPN Missense_Mutation p.T1330A 0.29 tolerated(0.13) benign(0.009) TCGA-AZ-4315-01 1 36215273 36215273 G T CLSPN Missense_Mutation p.S723Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 1 36299700 36299700 T C AGO4 Missense_Mutation p.F497L 0.47 tolerated(0.6) benign(0.035) TCGA-AZ-4315-01 1 36358273 36358273 G A AGO1 Missense_Mutation p.E109K 0.26 tolerated(1) benign(0.136) TCGA-AZ-4315-01 1 36367134 36367134 G A AGO1 Silent p.S360S 0.37 TCGA-AZ-4315-01 1 3645962 3645962 G A TP73 Silent p.P382P 0.35 TCGA-AZ-4315-01 1 36557309 36557309 C T ADPRHL2 Silent p.R133R 0.34 TCGA-AZ-4315-01 1 36807227 36807227 T C STK40 3'UTR 0.28 TCGA-AZ-4315-01 1 36859726 36859726 G A LSM10 Missense_Mutation p.A2V 0.58 tolerated(0.23) benign(0.203) TCGA-AZ-4315-01 1 36883655 36883655 G A OSCP1 3'UTR 0.29 TCGA-AZ-4315-01 1 37356687 37356687 G A GRIK3 Silent p.F42F 0.26 TCGA-AZ-4315-01 1 3751635 3751635 T C CEP104 Missense_Mutation p.T447A 0.28 deleterious(0.01) possibly_damaging(0.516) TCGA-AZ-4315-01 1 38022661 38022661 G T DNALI1 Missense_Mutation p.E44D 0.40 tolerated(0.67) benign(0.011) TCGA-AZ-4315-01 1 38059445 38059445 G A GNL2 Nonsense_Mutation p.R23* 0.43 TCGA-AZ-4315-01 1 38482041 38482041 G A UTP11L Missense_Mutation p.R25Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 39322556 39322556 C T RRAGC Missense_Mutation p.A146T 0.35 deleterious(0) possibly_damaging(0.778) TCGA-AZ-4315-01 1 39340155 39340155 T G GJA9 3'UTR 0.36 TCGA-AZ-4315-01 1 39381250 39381250 T C RHBDL2 Missense_Mutation p.M127V 0.37 deleterious(0) possibly_damaging(0.797) TCGA-AZ-4315-01 1 39384874 39384874 A G RHBDL2 Missense_Mutation p.V4A 0.36 tolerated_low_confidence(1) benign(0) TCGA-AZ-4315-01 1 39759288 39759288 C A MACF1 Missense_Mutation p.F722L 0.46 benign(0.115) TCGA-AZ-4315-01 1 39776563 39776563 G A MACF1 Missense_Mutation p.R1059H 0.26 benign(0.001) TCGA-AZ-4315-01 1 39776597 39776597 A G MACF1 Silent p.R1070R 0.41 TCGA-AZ-4315-01 1 39800847 39800847 G T MACF1 Intron 0.29 TCGA-AZ-4315-01 1 39801907 39801907 A G MACF1 Intron 0.33 TCGA-AZ-4315-01 1 39816508 39816508 A G MACF1 Missense_Mutation p.K1611E 0.35 possibly_damaging(0.855) TCGA-AZ-4315-01 1 40131262 40131262 C T NT5C1A Missense_Mutation p.D122N 0.30 deleterious(0) probably_damaging(0.958) TCGA-AZ-4315-01 1 40229279 40229279 C A BMP8B Intron 0.25 TCGA-AZ-4315-01 1 40533227 40533227 G T CAP1 Nonsense_Mutation p.E216* 0.29 TCGA-AZ-4315-01 1 40702676 40702676 G A RLF Missense_Mutation p.D768N 0.34 tolerated(0.07) possibly_damaging(0.73) TCGA-AZ-4315-01 1 40756533 40756533 C A ZMPSTE24 Missense_Mutation p.S356Y 0.34 deleterious(0.02) benign(0.326) TCGA-AZ-4315-01 1 40928636 40928636 G T ZFP69B Missense_Mutation p.R327I 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-AZ-4315-01 1 40981456 40981456 T G EXO5 3'UTR 0.14 TCGA-AZ-4315-01 1 40982171 40982171 C T EXO5 3'Flank 0.35 TCGA-AZ-4315-01 1 41013068 41013068 A G ZNF684 Missense_Mutation p.N358S 0.31 tolerated(0.3) benign(0.001) TCGA-AZ-4315-01 1 41228632 41228632 G T NFYC Missense_Mutation p.A212S 0.38 tolerated(0.29) benign(0.005) TCGA-AZ-4315-01 1 41232621 41232621 G A NFYC Missense_Mutation p.R287Q 0.34 tolerated_low_confidence(0.49) benign(0) TCGA-AZ-4315-01 1 41287996 41287996 G A KCNQ4 Missense_Mutation p.R351H 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 41466753 41466753 G A CTPS1 Missense_Mutation p.R353H 0.31 deleterious(0.02) benign(0.013) TCGA-AZ-4315-01 1 41481795 41481795 T C SLFNL1 Missense_Mutation p.T403A 0.32 tolerated(0.05) benign(0.437) TCGA-AZ-4315-01 1 41618365 41618365 T C SCMH1 5'UTR 0.38 TCGA-AZ-4315-01 1 42047262 42047262 G A HIVEP3 Silent p.S1069S 0.31 TCGA-AZ-4315-01 1 42047570 42047570 G A HIVEP3 Missense_Mutation p.R967C 0.34 probably_damaging(0.935) TCGA-AZ-4315-01 1 42047681 42047681 G A HIVEP3 Missense_Mutation p.R930C 0.34 probably_damaging(0.998) TCGA-AZ-4315-01 1 42693619 42693619 C A FOXJ3 Missense_Mutation p.D155Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 43162856 43162856 T C YBX1 Silent p.A221A 0.33 TCGA-AZ-4315-01 1 43638115 43638115 G T EBNA1BP2 5'UTR 0.33 TCGA-AZ-4315-01 1 43778046 43778046 C A TIE1 Silent p.S567S 0.41 TCGA-AZ-4315-01 1 44133489 44133489 T C KDM4A Missense_Mutation p.V321A 0.26 deleterious(0) benign(0.082) TCGA-AZ-4315-01 1 44422363 44422363 A G IPO13 Missense_Mutation p.Y365C 0.33 deleterious(0) possibly_damaging(0.823) TCGA-AZ-4315-01 1 44422508 44422508 G A IPO13 Silent p.E377E 0.45 TCGA-AZ-4315-01 1 44441522 44441522 T C ATP6V0B Splice_Site p.X39_splice 0.45 TCGA-AZ-4315-01 1 44489953 44489953 G A SLC6A9 5'UTR 0.29 TCGA-AZ-4315-01 1 44584590 44584590 G A KLF17 Missense_Mutation p.R4Q 0.43 tolerated_low_confidence(0.39) benign(0.077) TCGA-AZ-4315-01 1 44685740 44685740 G A DMAP1 Missense_Mutation p.R368Q 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 44878382 44878382 C T RNF220 Missense_Mutation p.R205W 0.33 deleterious(0) probably_damaging(0.913) TCGA-AZ-4315-01 1 45101201 45101201 C T RNF220 Intron 0.35 TCGA-AZ-4315-01 1 45407195 45407195 T G EIF2B3 Missense_Mutation p.K146T 0.33 deleterious(0) benign(0.317) TCGA-AZ-4315-01 1 45473991 45473991 A C HECTD3 Missense_Mutation p.F414C 0.30 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 1 45484187 45484187 A C ZSWIM5 Missense_Mutation p.L1166R 0.25 deleterious(0) unknown(0) TCGA-AZ-4315-01 1 45794208 45794208 G T HPDL 3'UTR 0.30 TCGA-AZ-4315-01 1 45798119 45798119 G A MUTYH Silent p.C241C 0.39 TCGA-AZ-4315-01 1 45799215 45799215 T C MUTYH Missense_Mutation p.E70G 0.35 deleterious(0.03) benign(0.02) TCGA-AZ-4315-01 1 45812446 45812446 G A TESK2 Silent p.F266F 0.30 TCGA-AZ-4315-01 1 45973922 45973922 C T MMACHC Silent p.Y105Y 0.34 TCGA-AZ-4315-01 1 46081009 46081009 G A NASP Missense_Mutation p.G630R 0.39 deleterious(0.03) benign(0.013) TCGA-AZ-4315-01 1 46471964 46471964 G T MAST2 Missense_Mutation p.A267S 0.16 tolerated_low_confidence(0.06) probably_damaging(0.966) TCGA-AZ-4315-01 1 46685870 46685870 A G LURAP1 Missense_Mutation p.Q233R 0.29 deleterious(0.04) benign(0.405) TCGA-AZ-4315-01 1 46775924 46775924 G A UQCRH Missense_Mutation p.R60Q 0.29 tolerated(0.06) benign(0.068) TCGA-AZ-4315-01 1 47154079 47154079 G A EFCAB14 Silent p.S311S 0.29 TCGA-AZ-4315-01 1 47181973 47181973 G A EFCAB14 Nonsense_Mutation p.R110* 0.32 TCGA-AZ-4315-01 1 47399660 47399660 T C CYP4A11 Missense_Mutation p.S394G 0.28 deleterious(0.01) benign(0.098) TCGA-AZ-4315-01 1 47499004 47499004 C T CYP4X1 Silent p.Y152Y 0.23 TCGA-AZ-4315-01 1 47534420 47534420 C A CYP4Z1 Missense_Mutation p.L102I 0.40 tolerated(1) possibly_damaging(0.874) TCGA-AZ-4315-01 1 47611542 47611542 C A CYP4A22 Silent p.I409I 0.37 TCGA-AZ-4315-01 1 4772720 4772720 G A AJAP1 Missense_Mutation p.E264K 0.19 tolerated(1) benign(0) TCGA-AZ-4315-01 1 47746133 47746133 C T STIL Missense_Mutation p.R666K 0.33 tolerated(1) benign(0.009) TCGA-AZ-4315-01 1 47767391 47767391 G A STIL Missense_Mutation p.R99C 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 47906200 47906200 C T FOXD2 3'UTR 0.09 TCGA-AZ-4315-01 1 48697664 48697664 G A SLC5A9 Silent p.R271R 0.34 TCGA-AZ-4315-01 1 50661255 50661255 C A ELAVL4 Missense_Mutation p.F194L 0.37 deleterious(0.02) possibly_damaging(0.865) TCGA-AZ-4315-01 1 50666695 50666695 C T ELAVL4 Missense_Mutation p.R333C 0.38 deleterious(0.02) possibly_damaging(0.586) TCGA-AZ-4315-01 1 50941200 50941200 A C FAF1 Missense_Mutation p.F602C 0.32 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 51753909 51753909 G A TTC39A Nonsense_Mutation p.R556* 0.27 TCGA-AZ-4315-01 1 51887524 51887524 C A EPS15 Missense_Mutation p.K349N 0.32 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 1 51906072 51906072 G T EPS15 Missense_Mutation p.F329L 0.26 tolerated(0.2) benign(0.104) TCGA-AZ-4315-01 1 52237812 52237812 G A OSBPL9 Missense_Mutation p.E347K 0.39 tolerated(0.31) benign(0.013) TCGA-AZ-4315-01 1 52402991 52402991 C T RAB3B Missense_Mutation p.E108K 0.20 tolerated(0.43) benign(0.316) TCGA-AZ-4315-01 1 52704733 52704733 T C ZFYVE9 Silent p.H548H 0.29 TCGA-AZ-4315-01 1 52818951 52818951 G T CC2D1B 3'UTR 0.42 TCGA-AZ-4315-01 1 52943409 52943409 T G ZCCHC11 Missense_Mutation p.N665T 0.32 deleterious(0.03) possibly_damaging(0.702) TCGA-AZ-4315-01 1 53153366 53153366 T C COA7 3'UTR 0.29 TCGA-AZ-4315-01 1 53245660 53245660 T G ZYG11B Missense_Mutation p.L363V 0.35 tolerated(0.08) benign(0.164) TCGA-AZ-4315-01 1 53323341 53323341 C T ZYG11A Missense_Mutation p.R310W 0.26 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 1 53358501 53358501 T G ZYG11A Missense_Mutation p.L718V 0.26 tolerated(0.07) benign(0.299) TCGA-AZ-4315-01 1 54060323 54060323 C T GLIS1 Missense_Mutation p.D85N 0.35 tolerated(0.08) benign(0.002) TCGA-AZ-4315-01 1 54238156 54238156 C T NDC1 Missense_Mutation p.D603N 0.32 deleterious(0) possibly_damaging(0.449) TCGA-AZ-4315-01 1 54337057 54337057 C A YIPF1 Nonsense_Mutation p.E157* 0.41 TCGA-AZ-4315-01 1 54360102 54360102 C T DIO1 Silent p.F73F 0.39 TCGA-AZ-4315-01 1 55118790 55118790 C A MROH7 Missense_Mutation p.S64Y 0.37 tolerated_low_confidence(0.19) benign(0.319) TCGA-AZ-4315-01 1 55167778 55167778 C T MROH7 Missense_Mutation p.R1101C 0.33 deleterious(0.02) probably_damaging(0.983) TCGA-AZ-4315-01 1 57170075 57170075 G A PRKAA2 Missense_Mutation p.R407Q 0.52 tolerated(0.38) probably_damaging(0.998) TCGA-AZ-4315-01 1 57171844 57171844 A G PRKAA2 Missense_Mutation p.Y458C 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 57224391 57224391 T G C1orf168 Missense_Mutation p.K366Q 0.39 tolerated(0.07) possibly_damaging(0.728) TCGA-AZ-4315-01 1 57333307 57333307 G A C8A Missense_Mutation p.A35T 0.32 tolerated(0.42) benign(0.001) TCGA-AZ-4315-01 1 57411724 57411724 A G C8B Missense_Mutation p.F292S 0.37 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 57415410 57415410 C T C8B Missense_Mutation p.E228K 0.23 tolerated(0.05) benign(0.053) TCGA-AZ-4315-01 1 57499102 57499102 C A DAB1 Intron 0.29 TCGA-AZ-4315-01 1 5935092 5935092 C T NPHP4 Silent p.T962T 0.26 TCGA-AZ-4315-01 1 6038363 6038363 C T NPHP4 Silent p.T82T 0.35 TCGA-AZ-4315-01 1 60456258 60456258 G A C1orf87 3'UTR 0.21 TCGA-AZ-4315-01 1 6171834 6171834 C T CHD5 Splice_Site p.X1750_splice 0.30 TCGA-AZ-4315-01 1 62232072 62232072 T C INADL Missense_Mutation p.V104A 0.26 tolerated(1) benign(0.001) TCGA-AZ-4315-01 1 62330053 62330053 G A INADL Silent p.L861L 0.31 TCGA-AZ-4315-01 1 62732447 62732447 C T KANK4 Missense_Mutation p.S759N 0.36 deleterious(0.02) benign(0.012) TCGA-AZ-4315-01 1 6279549 6279549 G T RNF207 3'UTR 0.31 TCGA-AZ-4315-01 1 62941521 62941521 G A DOCK7 Nonsense_Mutation p.R1909* 0.40 TCGA-AZ-4315-01 1 62943430 62943430 C A DOCK7 Nonsense_Mutation p.E1828* 0.12 TCGA-AZ-4315-01 1 62961319 62961319 G T DOCK7 Missense_Mutation p.L1622I 0.38 deleterious(0) probably_damaging(0.95) TCGA-AZ-4315-01 1 63836525 63836525 G T ALG6 5'UTR 0.47 TCGA-AZ-4315-01 1 63836530 63836530 G A ALG6 5'UTR 0.39 TCGA-AZ-4315-01 1 64015296 64015296 C T DLEU2L 3'UTR 0.34 TCGA-AZ-4315-01 1 64515543 64515543 G A ROR1 Missense_Mutation p.R115Q 0.50 deleterious(0.01) possibly_damaging(0.871) TCGA-AZ-4315-01 1 65099824 65099824 A C CACHD1 Missense_Mutation p.K245T 0.36 tolerated(0.19) benign(0.023) TCGA-AZ-4315-01 1 65145312 65145312 C T CACHD1 Silent p.S1042S 0.13 TCGA-AZ-4315-01 1 65247217 65247217 G A RAVER2 Missense_Mutation p.R314Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 1 65278472 65278472 C T RAVER2 Missense_Mutation p.R565W 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 65851519 65851519 C T DNAJC6 Missense_Mutation p.R309C 0.30 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 1 65878634 65878634 G A DNAJC6 Missense_Mutation p.A947T 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 66074453 66074453 T C LEPR Missense_Mutation p.S541P 0.31 deleterious(0.02) benign(0.078) TCGA-AZ-4315-01 1 66075695 66075695 C T LEPR Silent p.V606V 0.23 TCGA-AZ-4315-01 1 66458606 66458606 C A PDE4B Intron 0.22 TCGA-AZ-4315-01 1 66713310 66713310 C T PDE4B Missense_Mutation p.S150L 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 1 66834625 66834625 A G PDE4B Silent p.K606K 0.28 TCGA-AZ-4315-01 1 67147652 67147652 T G SGIP1 Silent p.A305A 0.38 TCGA-AZ-4315-01 1 67160810 67160810 C T SGIP1 Intron 0.24 TCGA-AZ-4315-01 1 67299312 67299312 T C WDR78 Missense_Mutation p.I657V 0.31 deleterious(0) benign(0.273) TCGA-AZ-4315-01 1 67450307 67450307 T G MIER1 Silent p.V474V 0.30 TCGA-AZ-4315-01 1 67450809 67450809 A G MIER1 3'UTR 0.50 TCGA-AZ-4315-01 1 67452046 67452046 C A MIER1 3'Flank 0.37 TCGA-AZ-4315-01 1 67469896 67469896 T G SLC35D1 3'UTR 0.31 TCGA-AZ-4315-01 1 67469988 67469988 C A SLC35D1 3'UTR 0.35 TCGA-AZ-4315-01 1 67561082 67561082 C T C1orf141 Missense_Mutation p.D147N 0.35 tolerated(0.07) probably_damaging(0.913) TCGA-AZ-4315-01 1 67724298 67724298 G A IL23R Silent p.E459E 0.35 TCGA-AZ-4315-01 1 68512155 68512155 G A DIRAS3 3'UTR 0.23 TCGA-AZ-4315-01 1 68944999 68944999 A G DEPDC1 Missense_Mutation p.I647T 0.31 deleterious(0) possibly_damaging(0.616) TCGA-AZ-4315-01 1 70339414 70339414 A G LRRC7 Intron 0.38 TCGA-AZ-4315-01 1 70477562 70477562 C T LRRC7 Missense_Mutation p.R325W 0.15 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 1 70625081 70625081 G A LRRC40 Silent p.A384A 0.33 TCGA-AZ-4315-01 1 70639321 70639321 C T LRRC40 Missense_Mutation p.R350Q 0.31 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 1 70641616 70641616 A C LRRC40 Missense_Mutation p.L285R 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 1 70697561 70697561 C T SRSF11 Intron 0.31 TCGA-AZ-4315-01 1 70700410 70700410 C G SRSF11 Missense_Mutation p.A160G 0.35 tolerated(0.24) unknown(0) TCGA-AZ-4315-01 1 70703152 70703152 C T SRSF11 Missense_Mutation p.S212L 0.23 tolerated(0.09) unknown(0) TCGA-AZ-4315-01 1 70742520 70742520 C T ANKRD13C Missense_Mutation p.R408Q 0.16 tolerated(0.12) probably_damaging(0.997) TCGA-AZ-4315-01 1 71512892 71512892 G A PTGER3 Silent p.I123I 0.09 TCGA-AZ-4315-01 1 74648256 74648256 C T LRRIQ3 Missense_Mutation p.R180Q 0.26 tolerated(0.12) benign(0.032) TCGA-AZ-4315-01 1 74649319 74649319 C A LRRIQ3 Missense_Mutation p.S17I 0.35 deleterious(0) benign(0.214) TCGA-AZ-4315-01 1 74670470 74670470 A C FPGT Missense_Mutation p.N247H 0.31 tolerated(0.06) benign(0.01) TCGA-AZ-4315-01 1 74701875 74701875 G A FPGT-TNNI3K Missense_Mutation p.E158K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.716) TCGA-AZ-4315-01 1 75097598 75097598 C T C1orf173 Silent p.V206V 0.31 TCGA-AZ-4315-01 1 76313903 76313903 G T MSH4 Missense_Mutation p.R391I 0.16 deleterious(0) possibly_damaging(0.739) TCGA-AZ-4315-01 1 76363716 76363716 T A MSH4 Missense_Mutation p.I827N 0.28 deleterious(0) possibly_damaging(0.903) TCGA-AZ-4315-01 1 76378421 76378421 C T MSH4 Missense_Mutation p.A887V 0.48 tolerated(0.05) benign(0.049) TCGA-AZ-4315-01 1 77094587 77094587 G A ST6GALNAC3 3'UTR 0.38 TCGA-AZ-4315-01 1 7723933 7723933 C T CAMTA1 Silent p.F442F 0.33 TCGA-AZ-4315-01 1 7724369 7724369 G A CAMTA1 Missense_Mutation p.A588T 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AZ-4315-01 1 77334318 77334318 C T ST6GALNAC5 Missense_Mutation p.S51L 0.26 benign(0.05) TCGA-AZ-4315-01 1 78041799 78041799 C T ZZZ3 Missense_Mutation p.R762Q 0.35 tolerated(0.06) benign(0.28) TCGA-AZ-4315-01 1 7806115 7806115 T G CAMTA1 Silent p.A1527A 0.30 TCGA-AZ-4315-01 1 78390893 78390893 G A NEXN Silent p.T156T 0.35 TCGA-AZ-4315-01 1 7845514 7845514 C T PER3 Nonsense_Mutation p.R48* 0.34 TCGA-AZ-4315-01 1 78591631 78591631 C T GIPC2 Nonsense_Mutation p.R261* 0.32 TCGA-AZ-4315-01 1 78601547 78601547 G T GIPC2 3'UTR 0.33 TCGA-AZ-4315-01 1 79116328 79116328 C T IFI44 Nonsense_Mutation p.R150* 0.33 TCGA-AZ-4315-01 1 79129586 79129586 A G IFI44 3'UTR 0.25 TCGA-AZ-4315-01 1 79355750 79355750 A G ELTD1 3'UTR 0.36 TCGA-AZ-4315-01 1 79357232 79357232 A C ELTD1 Missense_Mutation p.F663V 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 79383684 79383684 A G ELTD1 Missense_Mutation p.F505L 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 8073928 8073928 C T ERRFI1 Missense_Mutation p.R244Q 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 1 82447508 82447508 G A LPHN2 Missense_Mutation p.A1027T 0.24 deleterious(0) probably_damaging(0.918) TCGA-AZ-4315-01 1 82456538 82456538 A G LPHN2 Silent p.L1307L 0.29 TCGA-AZ-4315-01 1 8415094 8415094 T C RERE 3'UTR 0.20 TCGA-AZ-4315-01 1 84335543 84335543 A G TTLL7 3'UTR 0.26 TCGA-AZ-4315-01 1 84369766 84369766 C T TTLL7 Missense_Mutation p.R735Q 0.27 deleterious(0) possibly_damaging(0.872) TCGA-AZ-4315-01 1 84372113 84372113 G C TTLL7 Missense_Mutation p.Q676E 0.34 deleterious(0.03) benign(0.109) TCGA-AZ-4315-01 1 84403625 84403625 C T TTLL7 Silent p.E266E 0.35 TCGA-AZ-4315-01 1 84874084 84874084 G A DNASE2B Intron 0.29 TCGA-AZ-4315-01 1 85424256 85424256 T C MCOLN2 Missense_Mutation p.T123A 0.33 deleterious(0.01) probably_damaging(0.948) TCGA-AZ-4315-01 1 85486764 85486764 C T MCOLN3 Missense_Mutation p.E506K 0.30 deleterious(0.01) probably_damaging(0.937) TCGA-AZ-4315-01 1 85499838 85499838 G A MCOLN3 Nonsense_Mutation p.R165* 0.32 TCGA-AZ-4315-01 1 85546976 85546976 C T WDR63 Nonsense_Mutation p.R55* 0.34 TCGA-AZ-4315-01 1 85587440 85587440 G A WDR63 Missense_Mutation p.E642K 0.31 deleterious(0.02) possibly_damaging(0.842) TCGA-AZ-4315-01 1 85648051 85648051 A C SYDE2 Silent p.V758V 0.34 TCGA-AZ-4315-01 1 86119634 86119634 A C ZNHIT6 3'UTR 0.39 TCGA-AZ-4315-01 1 86906008 86906008 G T CLCA2 Nonsense_Mutation p.G461* 0.30 TCGA-AZ-4315-01 1 879628 879628 C T SAMD11 3'UTR 0.25 TCGA-AZ-4315-01 1 8928072 8928072 G A ENO1 Silent p.I95I 0.31 TCGA-AZ-4315-01 1 89325833 89325833 C T GTF2B Missense_Mutation p.R132Q 0.37 tolerated(0.35) benign(0.019) TCGA-AZ-4315-01 1 89434373 89434373 T C CCBL2 Missense_Mutation p.N95D 0.36 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 1 89478987 89478987 T G GBP3 Missense_Mutation p.K250T 0.39 tolerated(1) benign(0.002) TCGA-AZ-4315-01 1 89615230 89615230 G A GBP7 Silent p.Y299Y 0.24 TCGA-AZ-4315-01 1 89657031 89657031 G T GBP4 Missense_Mutation p.L277I 0.34 tolerated(0.56) benign(0.222) TCGA-AZ-4315-01 1 89875899 89875899 A G GBP1P1 RNA 0.25 TCGA-AZ-4315-01 1 9034857 9034857 G T CA6 3'Flank 0.31 TCGA-AZ-4315-01 1 90484245 90484245 A C ZNF326 Missense_Mutation p.E359A 0.33 deleterious(0.05) probably_damaging(0.973) TCGA-AZ-4315-01 1 9067389 9067389 G A SLC2A7 Missense_Mutation p.A391V 0.12 tolerated(0.15) benign(0.006) TCGA-AZ-4315-01 1 9098940 9098940 A G SLC2A5 Missense_Mutation p.F349L 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 1 91405486 91405486 C A ZNF644 Missense_Mutation p.Q475H 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-4315-01 1 91726563 91726563 G T HFM1 3'UTR 0.40 TCGA-AZ-4315-01 1 91809039 91809039 T A HFM1 Missense_Mutation p.L761F 0.27 deleterious(0) probably_damaging(0.989) TCGA-AZ-4315-01 1 91846466 91846466 T C HFM1 Intron 0.37 TCGA-AZ-4315-01 1 91851381 91851381 T G HFM1 Missense_Mutation p.I169L 0.27 tolerated_low_confidence(0.17) benign(0.004) TCGA-AZ-4315-01 1 91859739 91859739 C A HFM1 Missense_Mutation p.E135D 0.35 tolerated_low_confidence(0.21) benign(0.004) TCGA-AZ-4315-01 1 91977470 91977470 C T CDC7 Missense_Mutation p.R188C 0.14 deleterious(0.02) benign(0.052) TCGA-AZ-4315-01 1 92441885 92441885 A C BRDT Missense_Mutation p.K170Q 0.38 tolerated(0.48) benign(0.007) TCGA-AZ-4315-01 1 92446317 92446317 G A BRDT Missense_Mutation p.E469K 0.30 tolerated(0.44) benign(0.05) TCGA-AZ-4315-01 1 92446484 92446484 A C BRDT Missense_Mutation p.K500T 0.28 tolerated(0.05) benign(0.171) TCGA-AZ-4315-01 1 92554417 92554417 G T BTBD8 Missense_Mutation p.E104D 0.28 tolerated(0.28) benign(0.032) TCGA-AZ-4315-01 1 92634495 92634495 C T KIAA1107 Missense_Mutation p.R68C 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 1 92646491 92646491 T G KIAA1107 Missense_Mutation p.F646C 0.31 tolerated(0.17) benign(0.002) TCGA-AZ-4315-01 1 92648133 92648133 T G KIAA1107 Silent p.A1193A 0.25 TCGA-AZ-4315-01 1 92697000 92697000 A C C1orf146 Missense_Mutation p.K8T 0.34 tolerated(0.26) unknown(0) TCGA-AZ-4315-01 1 92811447 92811447 T G RPAP2 Nonsense_Mutation p.L555* 0.36 TCGA-AZ-4315-01 1 93301796 93301796 T C RPL5 Missense_Mutation p.V125A 0.30 tolerated(0.37) benign(0.049) TCGA-AZ-4315-01 1 93575788 93575788 G T MTF2 Missense_Mutation p.D3Y 0.45 deleterious(0) possibly_damaging(0.851) TCGA-AZ-4315-01 1 93724430 93724430 T G CCDC18 Silent p.A1277A 0.30 TCGA-AZ-4315-01 1 93988962 93988962 C T FNBP1L Nonsense_Mutation p.R86* 0.29 TCGA-AZ-4315-01 1 94486914 94486914 C T ABCA4 Missense_Mutation p.A1634T 0.36 deleterious(0.03) probably_damaging(0.943) TCGA-AZ-4315-01 1 94941250 94941250 A C ABCD3 Missense_Mutation p.K195T 0.31 deleterious(0) probably_damaging(0.961) TCGA-AZ-4315-01 1 94948570 94948570 C A ABCD3 Intron 0.33 TCGA-AZ-4315-01 1 95448642 95448642 C T ALG14 Missense_Mutation p.R214Q 0.38 tolerated(0.06) possibly_damaging(0.899) TCGA-AZ-4315-01 1 95614319 95614319 G A TMEM56 Missense_Mutation p.D73N 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4315-01 1 95639446 95639446 G A TMEM56 Splice_Site p.X158_splice 0.12 TCGA-AZ-4315-01 1 97278656 97278656 T G PTBP2 Missense_Mutation p.F487C 0.30 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 1 9793473 9793473 C T CLSTN1 Missense_Mutation p.E805K 0.27 deleterious(0) possibly_damaging(0.608) TCGA-AZ-4315-01 1 9795619 9795619 C T CLSTN1 Missense_Mutation p.E597K 0.38 tolerated(0.2) benign(0.004) TCGA-AZ-4315-01 1 98186452 98186452 G A DPYD Intron 0.30 TCGA-AZ-4315-01 1 98187125 98187125 A C DPYD Missense_Mutation p.L142V 0.33 tolerated(0.12) probably_damaging(1) TCGA-AZ-4315-01 1 9910731 9910731 C T CTNNBIP1 3'UTR 0.28 TCGA-AZ-4315-01 1 99772507 99772507 G A LPPR4 Missense_Mutation p.E745K 0.33 deleterious(0.02) benign(0.121) TCGA-AZ-4315-01 20 10023826 10023826 G A ANKEF1 Missense_Mutation p.A135T 0.28 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 20 10287060 10287060 C A SNAP25 3'UTR 0.27 TCGA-AZ-4315-01 20 10603715 10603715 C T SLX4IP Silent p.F305F 0.36 TCGA-AZ-4315-01 20 10620412 10620412 C T JAG1 Missense_Mutation p.A1131T 0.29 tolerated(0.37) benign(0.175) TCGA-AZ-4315-01 20 11903472 11903472 C T BTBD3 Missense_Mutation p.R243C 0.27 tolerated(0.06) benign(0.363) TCGA-AZ-4315-01 20 126290 126290 C T DEFB126 Missense_Mutation p.S98L 0.27 tolerated(0.17) unknown(0) TCGA-AZ-4315-01 20 126299 126299 C T DEFB126 Missense_Mutation p.S101L 0.31 deleterious(0.03) unknown(0) TCGA-AZ-4315-01 20 13279617 13279617 C T ISM1 Silent p.S302S 0.38 TCGA-AZ-4315-01 20 13514737 13514737 C T TASP1 Missense_Mutation p.E243K 0.26 tolerated(0.17) benign(0.028) TCGA-AZ-4315-01 20 13845828 13845828 G A SEL1L2 Silent p.I488I 0.35 TCGA-AZ-4315-01 20 14307911 14307911 T G FLRT3 Missense_Mutation p.N81T 0.33 tolerated(0.49) benign(0.001) TCGA-AZ-4315-01 20 1445016 1445016 G A NSFL1C Missense_Mutation p.S54L 0.23 tolerated(0.15) benign(0.219) TCGA-AZ-4315-01 20 1546806 1546806 C T SIRPB1 Missense_Mutation p.A398T 0.24 deleterious_low_confidence(0.01) benign(0.142) TCGA-AZ-4315-01 20 16362364 16362364 C A KIF16B Nonsense_Mutation p.E605* 0.37 TCGA-AZ-4315-01 20 16492153 16492153 C T KIF16B Missense_Mutation p.E156K 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 20 17492630 17492630 C T BFSP1 Silent p.G206G 0.41 TCGA-AZ-4315-01 20 17937593 17937593 A C SNX5 Missense_Mutation p.F47C 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 20 17937620 17937620 G A SNX5 Missense_Mutation p.A38V 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-AZ-4315-01 20 18297205 18297205 G A ZNF133 Silent p.R569R 0.32 TCGA-AZ-4315-01 20 18374917 18374917 G A DZANK1 Silent p.C563C 0.25 TCGA-AZ-4315-01 20 18396061 18396061 C T DZANK1 Silent p.P329P 0.26 TCGA-AZ-4315-01 20 18445980 18445980 A G DZANK1 Missense_Mutation p.V8A 0.38 tolerated(0.16) benign(0.162) TCGA-AZ-4315-01 20 18461135 18461135 C T POLR3F Silent p.C221C 0.27 TCGA-AZ-4315-01 20 18794976 18794976 G A SCP2D1 3'UTR 0.26 TCGA-AZ-4315-01 20 1903002 1903002 G T SIRPA Missense_Mutation p.E266D 0.34 tolerated(0.6) benign(0) TCGA-AZ-4315-01 20 19566089 19566089 C A SLC24A3 Silent p.V171V 0.43 TCGA-AZ-4315-01 20 19701882 19701882 C T SLC24A3 3'UTR 0.42 TCGA-AZ-4315-01 20 20030019 20030019 G A CRNKL1 Silent p.Y248Y 0.26 TCGA-AZ-4315-01 20 20054993 20054993 T C C20orf26 Silent p.Y114Y 0.35 TCGA-AZ-4315-01 20 20278871 20278871 G A C20orf26 Missense_Mutation p.R1088Q 0.26 deleterious(0.04) benign(0.333) TCGA-AZ-4315-01 20 20340877 20340877 G T C20orf26 Missense_Mutation p.E1179D 0.28 tolerated(0.24) benign(0.072) TCGA-AZ-4315-01 20 20596824 20596824 C T RALGAPA2 Silent p.T517T 0.23 TCGA-AZ-4315-01 20 20618109 20618109 C A RALGAPA2 Missense_Mutation p.D235Y 0.39 deleterious(0) benign(0.418) TCGA-AZ-4315-01 20 21312958 21312958 G A XRN2 Silent p.P246P 0.32 TCGA-AZ-4315-01 20 23017258 23017258 A G SSTR4 Missense_Mutation p.I380V 0.35 tolerated_low_confidence(1) benign(0) TCGA-AZ-4315-01 20 23065010 23065010 C T CD93 Missense_Mutation p.R607H 0.17 deleterious(0.02) benign(0.252) TCGA-AZ-4315-01 20 23805937 23805937 G T CST2 Missense_Mutation p.F84L 0.35 tolerated(0.17) benign(0.066) TCGA-AZ-4315-01 20 23858213 23858213 G A CST5 Nonsense_Mutation p.R92* 0.28 TCGA-AZ-4315-01 20 25203584 25203584 T C ENTPD6 Missense_Mutation p.Y386H 0.27 deleterious(0.03) benign(0.309) TCGA-AZ-4315-01 20 25239942 25239942 C T PYGB Missense_Mutation p.L105F 0.22 tolerated(0.06) benign(0.084) TCGA-AZ-4315-01 20 25274902 25274902 C T PYGB Silent p.I762I 0.30 TCGA-AZ-4315-01 20 2638580 2638580 G A NOP56 Missense_Mutation p.M475I 0.26 tolerated(0.22) benign(0) TCGA-AZ-4315-01 20 2816049 2816049 A G PCED1A 3'UTR 0.30 TCGA-AZ-4315-01 20 2843183 2843183 T C VPS16 Intron 0.34 TCGA-AZ-4315-01 20 2985771 2985771 C T PTPRA Nonsense_Mutation p.R270* 0.24 TCGA-AZ-4315-01 20 29891181 29891181 C T DEFB116 Missense_Mutation p.R48K 0.30 tolerated(0.07) probably_damaging(0.997) TCGA-AZ-4315-01 20 30126029 30126029 C T HM13 Silent p.F110F 0.28 TCGA-AZ-4315-01 20 30409338 30409338 A C MYLK2 Silent p.P190P 0.24 TCGA-AZ-4315-01 20 30432145 30432145 G A FOXS1 3'UTR 0.33 TCGA-AZ-4315-01 20 3052310 3052310 C T OXT Silent p.G3G 0.20 TCGA-AZ-4315-01 20 30674488 30674488 C T HCK Missense_Mutation p.S298L 0.43 deleterious(0) possibly_damaging(0.891) TCGA-AZ-4315-01 20 30681740 30681740 C A HCK Silent p.V389V 0.33 TCGA-AZ-4315-01 20 30797934 30797934 A G POFUT1 Missense_Mutation p.N62S 0.30 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 20 30822565 30822565 C A POFUT1 3'UTR 0.62 TCGA-AZ-4315-01 20 30919176 30919176 G T KIF3B 3'UTR 0.27 TCGA-AZ-4315-01 20 31023189 31023189 T G ASXL1 Missense_Mutation p.S892A 0.37 tolerated_low_confidence(0.2) benign(0.257) TCGA-AZ-4315-01 20 31025250 31025250 G A ASXL1 3'UTR 0.24 TCGA-AZ-4315-01 20 3127193 3127193 T C FASTKD5 3'UTR 0.27 TCGA-AZ-4315-01 20 31374311 31374311 C T DNMT3B Nonsense_Mutation p.R104* 0.33 TCGA-AZ-4315-01 20 31381377 31381377 A C DNMT3B Silent p.R368R 0.34 TCGA-AZ-4315-01 20 31387102 31387102 G A DNMT3B Missense_Mutation p.R576Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 20 31394047 31394047 G A DNMT3B Silent p.S778S 0.15 TCGA-AZ-4315-01 20 31477139 31477139 G A EFCAB8 Silent p.P200P 0.30 TCGA-AZ-4315-01 20 31583513 31583513 C T SUN5 Missense_Mutation p.R149Q 0.29 tolerated(0.15) benign(0.067) TCGA-AZ-4315-01 20 31608353 31608353 T C BPIFB2 Missense_Mutation p.V385A 0.39 deleterious(0.02) benign(0.257) TCGA-AZ-4315-01 20 3194643 3194643 G A ITPA Missense_Mutation p.V68M 0.19 deleterious(0) possibly_damaging(0.876) TCGA-AZ-4315-01 20 31984727 31984727 C T CDK5RAP1 Silent p.E48E 0.30 TCGA-AZ-4315-01 20 32216233 32216233 C A CBFA2T2 Missense_Mutation p.L351I 0.34 tolerated(0.37) possibly_damaging(0.557) TCGA-AZ-4315-01 20 32228177 32228177 C T CBFA2T2 Missense_Mutation p.A452V 0.29 deleterious(0) probably_damaging(0.928) TCGA-AZ-4315-01 20 3235907 3235907 C A C20orf194 Missense_Mutation p.K1095N 0.22 deleterious(0) probably_damaging(0.957) TCGA-AZ-4315-01 20 33068905 33068905 T C ITCH Missense_Mutation p.Y704H 0.32 deleterious(0) probably_damaging(0.918) TCGA-AZ-4315-01 20 33169380 33169380 G T PIGU Missense_Mutation p.F341L 0.44 tolerated(1) benign(0.083) TCGA-AZ-4315-01 20 33511177 33511177 G A ACSS2 Missense_Mutation p.E547K 0.30 tolerated(0.28) benign(0.005) TCGA-AZ-4315-01 20 33582000 33582000 G T MYH7B Missense_Mutation p.K874N 0.26 possibly_damaging(0.791) TCGA-AZ-4315-01 20 33879621 33879621 G A FAM83C Missense_Mutation p.R163C 0.33 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 20 34022053 34022053 C A GDF5 Missense_Mutation p.R387L 0.29 deleterious(0.03) benign(0.104) TCGA-AZ-4315-01 20 34130654 34130654 G T ERGIC3 Missense_Mutation p.D111Y 0.37 tolerated(0.06) possibly_damaging(0.694) TCGA-AZ-4315-01 20 34240876 34240876 T G RBM12 Missense_Mutation p.Q790P 0.43 tolerated(0.33) unknown(0) TCGA-AZ-4315-01 20 34278426 34278426 T G NFS1 Missense_Mutation p.K157T 0.38 deleterious(0) possibly_damaging(0.845) TCGA-AZ-4315-01 20 34542147 34542147 C A SCAND1 Missense_Mutation p.E20D 0.21 tolerated_low_confidence(0.13) benign(0.075) TCGA-AZ-4315-01 20 34611559 34611559 C T CNBD2 Silent p.C431C 0.22 TCGA-AZ-4315-01 20 3541319 3541319 A G ATRN Missense_Mutation p.Y405C 0.36 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 20 35532574 35532574 C A SAMHD1 Missense_Mutation p.D497Y 0.33 deleterious(0) benign(0.235) TCGA-AZ-4315-01 20 3553393 3553393 C T ATRN Silent p.F629F 0.28 TCGA-AZ-4315-01 20 35663867 35663867 A C RBL1 Missense_Mutation p.S650A 0.34 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 20 35696531 35696531 C A RBL1 Nonsense_Mutation p.E117* 0.29 TCGA-AZ-4315-01 20 35879516 35879516 T G GHRH 3'UTR 0.37 TCGA-AZ-4315-01 20 3652255 3652255 C T ADAM33 Silent p.E626E 0.34 TCGA-AZ-4315-01 20 3677875 3677875 C T SIGLEC1 Missense_Mutation p.R746Q 0.34 tolerated(0.09) benign(0.167) TCGA-AZ-4315-01 20 36888693 36888693 G A KIAA1755 Intron 0.36 TCGA-AZ-4315-01 20 37186988 37186988 G A RALGAPB Silent p.T1141T 0.33 TCGA-AZ-4315-01 20 37638982 37638982 G A DHX35 Missense_Mutation p.A428T 0.30 tolerated(0.15) benign(0.411) TCGA-AZ-4315-01 20 3778375 3778375 T C CDC25B Missense_Mutation p.S103P 0.33 deleterious(0) probably_damaging(0.944) TCGA-AZ-4315-01 20 39795227 39795227 C T PLCG1 Silent p.I704I 0.30 TCGA-AZ-4315-01 20 39801163 39801163 A C PLCG1 Missense_Mutation p.Y1003S 0.31 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 20 39832215 39832215 T C ZHX3 Missense_Mutation p.T448A 0.33 tolerated(0.19) benign(0.03) TCGA-AZ-4315-01 20 39977496 39977496 C A LPIN3 Missense_Mutation p.L176M 0.29 tolerated(0.19) benign(0.025) TCGA-AZ-4315-01 20 40049376 40049376 G T CHD6 Missense_Mutation p.L1967M 0.30 tolerated_low_confidence(0.21) benign(0.01) TCGA-AZ-4315-01 20 40744692 40744692 G A PTPRT Intron 0.27 TCGA-AZ-4315-01 20 419792 419792 C T TBC1D20 Missense_Mutation p.E306K 0.40 tolerated(0.48) benign(0.003) TCGA-AZ-4315-01 20 4202738 4202738 A G ADRA1D Missense_Mutation p.F384S 0.24 deleterious(0.03) benign(0.213) TCGA-AZ-4315-01 20 42680082 42680082 G A TOX2 Missense_Mutation p.R183Q 0.31 tolerated(0.1) probably_damaging(0.982) TCGA-AZ-4315-01 20 43580532 43580532 C A TOMM34 Missense_Mutation p.E164D 0.31 tolerated(0.45) benign(0.002) TCGA-AZ-4315-01 20 43610567 43610567 C T STK4 Nonsense_Mutation p.R115* 0.30 TCGA-AZ-4315-01 20 43726771 43726771 G T KCNS1 Silent p.G214G 0.33 TCGA-AZ-4315-01 20 43738330 43738330 T - WFDC5 3'UTR 0.28 TCGA-AZ-4315-01 20 43835753 43835753 C T SEMG1 Missense_Mutation p.A20V 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 20 44141453 44141453 G A SPINT3 Silent p.C36C 0.32 TCGA-AZ-4315-01 20 44174349 44174349 T C EPPIN-WFDC6 Missense_Mutation p.D51G 0.35 tolerated(0.1) benign(0.42) TCGA-AZ-4315-01 20 44313291 44313291 C T WFDC10B 3'Flank 0.62 TCGA-AZ-4315-01 20 44596238 44596238 G A ZNF335 Missense_Mutation p.R284C 0.39 deleterious(0) probably_damaging(0.985) TCGA-AZ-4315-01 20 44685204 44685204 G A SLC12A5 Splice_Site p.X1060_splice 0.31 TCGA-AZ-4315-01 20 44685545 44685545 G T SLC12A5 Missense_Mutation p.E1063D 0.31 tolerated(0.27) benign(0.128) TCGA-AZ-4315-01 20 45130063 45130063 G A ZNF334 Missense_Mutation p.R639C 0.28 tolerated(0.06) probably_damaging(0.923) TCGA-AZ-4315-01 20 45170210 45170210 G A OCSTAMP Silent p.C468C 0.35 TCGA-AZ-4315-01 20 45221119 45221119 C T SLC13A3 Missense_Mutation p.A282T 0.36 deleterious(0) probably_damaging(0.974) TCGA-AZ-4315-01 20 45315455 45315455 C T TP53RK Silent p.R233R 0.32 TCGA-AZ-4315-01 20 45855964 45855964 C T ZMYND8 Missense_Mutation p.E954K 0.29 tolerated(0.07) probably_damaging(0.998) TCGA-AZ-4315-01 20 46252781 46252781 G A NCOA3 Silent p.A70A 0.26 TCGA-AZ-4315-01 20 46265255 46265255 G T NCOA3 Missense_Mutation p.D709Y 0.41 deleterious(0) probably_damaging(0.971) TCGA-AZ-4315-01 20 468196 468196 C T CSNK2A1 Missense_Mutation p.R283H 0.33 tolerated(0.06) probably_damaging(0.938) TCGA-AZ-4315-01 20 4705275 4705275 G A PRND Silent p.T26T 0.38 TCGA-AZ-4315-01 20 4764911 4764911 C A RASSF2 3'UTR 0.24 TCGA-AZ-4315-01 20 4764962 4764962 C T RASSF2 Missense_Mutation p.R313Q 0.26 tolerated(0.42) benign(0.001) TCGA-AZ-4315-01 20 47705872 47705872 T C CSE1L Missense_Mutation p.V637A 0.34 deleterious(0.04) possibly_damaging(0.708) TCGA-AZ-4315-01 20 47990007 47990007 T C KCNB1 Missense_Mutation p.N697S 0.30 tolerated_low_confidence(1) benign(0.005) TCGA-AZ-4315-01 20 47990499 47990499 T C KCNB1 Missense_Mutation p.Y533C 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-AZ-4315-01 20 47990840 47990840 G A KCNB1 Silent p.F419F 0.33 TCGA-AZ-4315-01 20 47991217 47991217 G A KCNB1 Missense_Mutation p.R294C 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 20 48098819 48098819 C T KCNB1 Missense_Mutation p.D67N 0.15 deleterious(0) possibly_damaging(0.746) TCGA-AZ-4315-01 20 48257045 48257045 A C B4GALT5 Missense_Mutation p.F255C 0.23 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 20 48808449 48808449 G T CEBPB Missense_Mutation p.K293N 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 20 49577123 49577123 C T MOCS3 3'UTR 0.36 TCGA-AZ-4315-01 20 49620987 49620987 G A KCNG1 Silent p.F377F 0.38 TCGA-AZ-4315-01 20 50092097 50092097 C T NFATC2 Missense_Mutation p.R478Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 20 50287733 50287733 T G ATP9A Missense_Mutation p.K367N 0.43 tolerated(0.5) benign(0.02) TCGA-AZ-4315-01 20 50768635 50768635 G T ZFP64 3'UTR 0.39 TCGA-AZ-4315-01 20 51872382 51872382 C T TSHZ2 Silent p.I795I 0.47 TCGA-AZ-4315-01 20 52185426 52185426 T C ZNF217 3'UTR 0.56 TCGA-AZ-4315-01 20 52773733 52773733 C T CYP24A1 Silent p.A510A 0.32 TCGA-AZ-4315-01 20 52830928 52830928 A C PFDN4 Missense_Mutation p.Q21H 0.37 deleterious(0) probably_damaging(0.972) TCGA-AZ-4315-01 20 5283318 5283318 C T PROKR2 Missense_Mutation p.A175T 0.37 tolerated(0.39) benign(0.013) TCGA-AZ-4315-01 20 52835561 52835561 A C PFDN4 Missense_Mutation p.N93H 0.31 tolerated(0.06) possibly_damaging(0.537) TCGA-AZ-4315-01 20 54573633 54573633 A T CBLN4 Missense_Mutation p.F196I 0.35 deleterious(0) possibly_damaging(0.882) TCGA-AZ-4315-01 20 55012577 55012577 G T CASS4 Nonsense_Mutation p.E132* 0.33 TCGA-AZ-4315-01 20 55028176 55028176 C A CASS4 Silent p.I648I 0.15 TCGA-AZ-4315-01 20 55033507 55033507 G A CASS4 Missense_Mutation p.A689T 0.23 deleterious(0.02) benign(0.041) TCGA-AZ-4315-01 20 55111330 55111330 G A FAM209B Missense_Mutation p.E118K 0.33 tolerated(0.16) benign(0.122) TCGA-AZ-4315-01 20 5564963 5564963 C T GPCPD1 Missense_Mutation p.E105K 0.38 tolerated(0.35) benign(0.003) TCGA-AZ-4315-01 20 56140139 56140139 C A PCK1 Silent p.V454V 0.26 TCGA-AZ-4315-01 20 57019467 57019467 T C VAPB 3'UTR 0.40 TCGA-AZ-4315-01 20 57430271 57430271 G A GNAS Missense_Mutation p.E651K 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4315-01 20 57485890 57485890 G A GNAS 3'UTR 0.40 TCGA-AZ-4315-01 20 57566037 57566037 C T NELFCD Silent p.L305L 0.31 TCGA-AZ-4315-01 20 57876698 57876698 C T EDN3 Missense_Mutation p.R96C 0.43 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 20 58455463 58455463 C A SYCP2 Missense_Mutation p.D946Y 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 20 58467201 58467201 C T SYCP2 Silent p.S736S 0.23 TCGA-AZ-4315-01 20 58467227 58467227 G T SYCP2 Missense_Mutation p.L728I 0.24 tolerated(0.05) probably_damaging(0.989) TCGA-AZ-4315-01 20 58520777 58520777 C A FAM217B 3'UTR 0.40 TCGA-AZ-4315-01 20 5903379 5903379 G A CHGB Missense_Mutation p.A197T 0.38 tolerated(0.34) benign(0.06) TCGA-AZ-4315-01 20 5904291 5904291 T C CHGB Missense_Mutation p.F501L 0.21 tolerated(1) benign(0.004) TCGA-AZ-4315-01 20 5933133 5933133 G A MCM8 Missense_Mutation p.R71Q 0.37 tolerated(0.68) benign(0) TCGA-AZ-4315-01 20 5958549 5958549 G A MCM8 Missense_Mutation p.V475M 0.37 deleterious(0) probably_damaging(0.922) TCGA-AZ-4315-01 20 60293723 60293723 G A RP11-429E11.3 3'UTR 0.32 TCGA-AZ-4315-01 20 60419829 60419829 C T CDH4 Missense_Mutation p.R228W 0.35 tolerated(0.32) benign(0.009) TCGA-AZ-4315-01 20 60470052 60470052 C A CDH4 Silent p.I379I 0.37 TCGA-AZ-4315-01 20 60470091 60470091 T G CDH4 Missense_Mutation p.F392L 0.36 tolerated(0.1) probably_damaging(0.983) TCGA-AZ-4315-01 20 60713283 60713283 C T PSMA7 Missense_Mutation p.E179K 0.29 tolerated(0.13) benign(0.036) TCGA-AZ-4315-01 20 60791109 60791109 T G HRH3 Missense_Mutation p.K431Q 0.56 deleterious(0.03) benign(0.338) TCGA-AZ-4315-01 20 60856880 60856880 T G OSBPL2 Missense_Mutation p.C273G 0.37 deleterious(0.05) probably_damaging(1) TCGA-AZ-4315-01 20 60859135 60859135 G A OSBPL2 Nonsense_Mutation p.W302* 0.31 TCGA-AZ-4315-01 20 60888427 60888427 C A LAMA5 Missense_Mutation p.E2916D 0.20 benign(0.032) TCGA-AZ-4315-01 20 60966148 60966148 C T CABLES2 Missense_Mutation p.R439Q 0.28 deleterious(0.03) probably_damaging(1) TCGA-AZ-4315-01 20 61040005 61040005 C T GATA5 Missense_Mutation p.E361K 0.31 tolerated(0.09) probably_damaging(0.99) TCGA-AZ-4315-01 20 61144043 61144043 C A C20orf166 5'Flank 0.41 TCGA-AZ-4315-01 20 61151565 61151565 T C C20orf166 Intron 0.33 TCGA-AZ-4315-01 20 61438997 61438997 G A OGFR Intron 0.32 TCGA-AZ-4315-01 20 61490808 61490808 G T TCFL5 Missense_Mutation p.S301Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 20 61522435 61522435 A C DIDO1 Missense_Mutation p.F1140V 0.23 probably_damaging(0.999) TCGA-AZ-4315-01 20 61591939 61591939 G A SLC17A9 Missense_Mutation p.A161T 0.25 tolerated(0.5) benign(0.021) TCGA-AZ-4315-01 20 61952418 61952418 G T COL20A1 Missense_Mutation p.E1069D 0.25 tolerated(1) benign(0.006) TCGA-AZ-4315-01 20 61982273 61982273 C T CHRNA4 Missense_Mutation p.D164N 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 20 62076073 62076073 C T KCNQ2 Missense_Mutation p.R210H 0.34 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 20 62572874 62572874 C T UCKL1 Intron 0.27 TCGA-AZ-4315-01 20 62593990 62593990 C T ZNF512B Missense_Mutation p.D705N 0.37 deleterious(0) possibly_damaging(0.764) TCGA-AZ-4315-01 20 62641558 62641558 G A PRPF6 Missense_Mutation p.E398K 0.29 deleterious(0) probably_damaging(0.95) TCGA-AZ-4315-01 20 62701647 62701647 G T TCEA2 Missense_Mutation p.K184N 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 20 62729155 62729155 G A OPRL1 Silent p.R78R 0.22 TCGA-AZ-4315-01 20 62730058 62730058 G A OPRL1 Missense_Mutation p.R340H 0.32 tolerated(0.05) benign(0.002) TCGA-AZ-4315-01 20 62730140 62730140 G A OPRL1 Silent p.P367P 0.38 TCGA-AZ-4315-01 20 62839225 62839225 G A MYT1 Missense_Mutation p.E226K 0.48 benign(0) TCGA-AZ-4315-01 20 62851087 62851087 G A MYT1 Missense_Mutation p.E665K 0.31 probably_damaging(0.999) TCGA-AZ-4315-01 20 62854673 62854673 G A MYT1 Missense_Mutation p.S830N 0.33 probably_damaging(0.995) TCGA-AZ-4315-01 20 62867961 62867961 G A MYT1 Missense_Mutation p.G984E 0.27 possibly_damaging(0.792) TCGA-AZ-4315-01 20 644735 644735 C T SCRT2 Silent p.S168S 0.12 TCGA-AZ-4315-01 20 741779 741779 G A SLC52A3 Missense_Mutation p.A434V 0.26 tolerated(0.14) benign(0.337) TCGA-AZ-4315-01 20 76721 76721 A G DEFB125 Missense_Mutation p.Y45C 0.33 deleterious(0.02) benign(0.003) TCGA-AZ-4315-01 20 7963263 7963263 T G TMX4 Missense_Mutation p.N229H 0.25 tolerated(0.54) benign(0.346) TCGA-AZ-4315-01 20 853641 853641 G A ANGPT4 Missense_Mutation p.R492C 0.39 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 20 853676 853676 C T ANGPT4 Missense_Mutation p.R480H 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 20 8689399 8689399 C T PLCB1 Missense_Mutation p.S417F 0.32 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 20 9389304 9389304 C A PLCB4 Missense_Mutation p.S593Y 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 20 9453930 9453930 C A PLCB4 Missense_Mutation p.A1126D 0.27 deleterious(0.04) possibly_damaging(0.474) TCGA-AZ-4315-01 20 9520098 9520098 G A PAK7 3'UTR 0.36 TCGA-AZ-4315-01 20 9561352 9561352 C T PAK7 Missense_Mutation p.E144K 0.37 tolerated(0.21) benign(0.053) TCGA-AZ-4315-01 21 10862632 10862632 A G IGHV1OR21-1 Missense_Mutation p.N4S 0.09 tolerated(1) benign(0) TCGA-AZ-4315-01 21 10906912 10906912 G A TPTE Missense_Mutation p.S550F 0.10 deleterious_low_confidence(0.01) benign(0.047) TCGA-AZ-4315-01 21 10920116 10920116 C T TPTE Missense_Mutation p.E380K 0.08 deleterious(0.01) benign(0.021) TCGA-AZ-4315-01 21 11039083 11039083 C T BAGE2 RNA 0.07 TCGA-AZ-4315-01 21 11039201 11039201 A C BAGE2 RNA 0.06 TCGA-AZ-4315-01 21 11058179 11058179 C T BAGE2 RNA 0.08 TCGA-AZ-4315-01 21 15013819 15013819 G T POTED Nonsense_Mutation p.E563* 0.55 TCGA-AZ-4315-01 21 15399846 15399846 C T AP001347.6 RNA 0.16 TCGA-AZ-4315-01 21 15561561 15561561 T G LIPI Missense_Mutation p.T97P 0.36 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 21 15748110 15748110 G A HSPA13 Missense_Mutation p.P204L 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 21 16340570 16340570 C A NRIP1 5'UTR 0.35 TCGA-AZ-4315-01 21 17199459 17199459 G T USP25 Nonsense_Mutation p.E544* 0.33 TCGA-AZ-4315-01 21 18938012 18938012 G A CXADR 3'UTR 0.30 TCGA-AZ-4315-01 21 18977273 18977273 G A BTG3 Silent p.V72V 0.25 TCGA-AZ-4315-01 21 19629068 19629068 G T CHODL Missense_Mutation p.D108Y 0.41 deleterious(0) possibly_damaging(0.674) TCGA-AZ-4315-01 21 19638330 19638330 G T CHODL Missense_Mutation p.R266I 0.32 deleterious(0.01) possibly_damaging(0.541) TCGA-AZ-4315-01 21 19685372 19685372 C T TMPRSS15 Silent p.T685T 0.34 TCGA-AZ-4315-01 21 19704410 19704410 G T TMPRSS15 Missense_Mutation p.L549M 0.23 tolerated(0.09) possibly_damaging(0.489) TCGA-AZ-4315-01 21 19770252 19770252 G T TMPRSS15 Silent p.I96I 0.27 TCGA-AZ-4315-01 21 22652900 22652900 C T NCAM2 Missense_Mutation p.L20F 0.33 tolerated(0.07) possibly_damaging(0.719) TCGA-AZ-4315-01 21 22707890 22707890 T C NCAM2 Missense_Mutation p.V268A 0.22 deleterious(0.01) possibly_damaging(0.709) TCGA-AZ-4315-01 21 22910245 22910245 C A NCAM2 Silent p.I827I 0.33 TCGA-AZ-4315-01 21 22910406 22910406 T C NCAM2 3'UTR 0.29 TCGA-AZ-4315-01 21 28210806 28210806 C A ADAMTS1 Missense_Mutation p.G719V 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 21 28212612 28212612 C T ADAMTS1 Missense_Mutation p.D550N 0.41 tolerated(0.62) benign(0.012) TCGA-AZ-4315-01 21 28216554 28216554 T C ADAMTS1 Silent p.G240G 0.36 TCGA-AZ-4315-01 21 30378613 30378613 C A RWDD2B 3'UTR 0.22 TCGA-AZ-4315-01 21 30426520 30426520 G A USP16 3'UTR 0.26 TCGA-AZ-4315-01 21 30432968 30432968 G A CCT8 Missense_Mutation p.A488V 0.28 tolerated(0.12) benign(0.375) TCGA-AZ-4315-01 21 30933991 30933991 G A GRIK1 Silent p.I770I 0.36 TCGA-AZ-4315-01 21 31538602 31538602 C T CLDN17 Missense_Mutation p.E112K 0.41 tolerated(0.7) benign(0.005) TCGA-AZ-4315-01 21 31744304 31744304 G A KRTAP13-2 Silent p.C76C 0.32 TCGA-AZ-4315-01 21 31971116 31971116 G A KRTAP6-2 Silent p.G26G 0.29 TCGA-AZ-4315-01 21 31973587 31973587 G T KRTAP22-1 3'UTR 0.30 TCGA-AZ-4315-01 21 31988846 31988846 C T KRTAP20-1 Missense_Mutation p.R25C 0.32 unknown(0) TCGA-AZ-4315-01 21 32119404 32119404 A G KRTAP21-2 Silent p.Y39Y 0.34 TCGA-AZ-4315-01 21 32185413 32185413 G A KRTAP8-1 Silent p.F42F 0.34 TCGA-AZ-4315-01 21 32253397 32253397 C T KRTAP11-1 Silent p.R149R 0.32 TCGA-AZ-4315-01 21 32253535 32253535 C T KRTAP11-1 Silent p.P103P 0.40 TCGA-AZ-4315-01 21 32410600 32410600 C T KRTAP19-8 Missense_Mutation p.G55R 0.23 deleterious_low_confidence(0) unknown(0) TCGA-AZ-4315-01 21 33043676 33043676 G A SCAF4 3'UTR 0.27 TCGA-AZ-4315-01 21 33065696 33065696 C T SCAF4 Missense_Mutation p.R475Q 0.29 benign(0.004) TCGA-AZ-4315-01 21 33076164 33076164 T G SCAF4 Missense_Mutation p.T79P 0.33 benign(0.345) TCGA-AZ-4315-01 21 33689377 33689377 C A URB1 Splice_Site p.X2012_splice 0.38 TCGA-AZ-4315-01 21 33705698 33705698 T A URB1 Missense_Mutation p.S1630C 0.43 deleterious(0.01) possibly_damaging(0.765) TCGA-AZ-4315-01 21 33723019 33723019 G A URB1 Silent p.F942F 0.39 TCGA-AZ-4315-01 21 33948886 33948886 T C TCP10L 3'UTR 0.28 TCGA-AZ-4315-01 21 34012087 34012087 C T SYNJ1 Silent p.T1236T 0.39 TCGA-AZ-4315-01 21 34018810 34018810 C T SYNJ1 Missense_Mutation p.R1086Q 0.33 deleterious(0.04) probably_damaging(0.958) TCGA-AZ-4315-01 21 34123488 34123488 C T PAXBP1 Missense_Mutation p.D517N 0.35 deleterious(0.02) possibly_damaging(0.64) TCGA-AZ-4315-01 21 34537830 34537830 C A C21orf54 3'UTR 0.26 TCGA-AZ-4315-01 21 34832726 34832726 T C TMEM50B Missense_Mutation p.T123A 0.31 tolerated(0.81) benign(0.002) TCGA-AZ-4315-01 21 34861055 34861055 C A DNAJC28 Missense_Mutation p.D216Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 21 34889728 34889728 G A GART Silent p.I630I 0.34 TCGA-AZ-4315-01 21 34894556 34894556 G A GART Silent p.I444I 0.28 TCGA-AZ-4315-01 21 34921957 34921957 G A SON Silent p.T140T 0.27 TCGA-AZ-4315-01 21 34925265 34925265 A C SON Missense_Mutation p.E1243A 0.34 benign(0.292) TCGA-AZ-4315-01 21 34927647 34927647 G T SON Missense_Mutation p.R2037I 0.26 unknown(0) TCGA-AZ-4315-01 21 34948754 34948754 A C SON 3'UTR 0.29 TCGA-AZ-4315-01 21 35140024 35140024 C T ITSN1 Nonsense_Mutation p.R312* 0.41 TCGA-AZ-4315-01 21 35183447 35183447 C T ITSN1 Missense_Mutation p.R830C 0.09 tolerated(0.06) benign(0.01) TCGA-AZ-4315-01 21 35254683 35254683 C T ITSN1 Missense_Mutation p.T1493M 0.38 deleterious(0.04) benign(0.399) TCGA-AZ-4315-01 21 35260526 35260526 G A ITSN1 Silent p.T1696T 0.16 TCGA-AZ-4315-01 21 35472335 35472335 G A SLC5A3 3'UTR 0.31 TCGA-AZ-4315-01 21 35474761 35474761 A G SLC5A3 3'UTR 0.09 TCGA-AZ-4315-01 21 35476729 35476729 T G SLC5A3 3'UTR 0.30 TCGA-AZ-4315-01 21 36421171 36421171 G A RUNX1 Missense_Mutation p.S9L 0.36 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-AZ-4315-01 21 37442641 37442641 C - CBR1 Frame_Shift_Del p.L77Cfs*33 0.21 TCGA-AZ-4315-01 21 37443532 37443532 C A CBR1 Intron 0.19 TCGA-AZ-4315-01 21 37444551 37444551 A C CBR1 Intron 0.41 TCGA-AZ-4315-01 21 37444914 37444914 C T CBR1 Missense_Mutation p.P190S 0.30 tolerated(0.14) possibly_damaging(0.456) TCGA-AZ-4315-01 21 38525293 38525293 G T TTC3 Missense_Mutation p.R819I 0.30 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 21 38597747 38597747 A G DSCR3 3'UTR 0.38 TCGA-AZ-4315-01 21 38997417 38997417 G T KCNJ6 3'UTR 0.35 TCGA-AZ-4315-01 21 39528600 39528600 A G DSCR8 3'UTR 0.31 TCGA-AZ-4315-01 21 39671940 39671940 A G KCNJ15 Missense_Mutation p.T253A 0.34 deleterious(0.02) possibly_damaging(0.832) TCGA-AZ-4315-01 21 40608663 40608663 T G BRWD1 Missense_Mutation p.N875T 0.21 deleterious(0.01) benign(0.287) TCGA-AZ-4315-01 21 41427717 41427717 C T DSCAM Missense_Mutation p.R1657Q 0.37 deleterious(0.05) probably_damaging(0.98) TCGA-AZ-4315-01 21 41684114 41684114 G T DSCAM Missense_Mutation p.S652R 0.32 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 21 41684274 41684274 A G DSCAM Missense_Mutation p.I599T 0.27 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 21 42861509 42861509 C A TMPRSS2 Missense_Mutation p.A121S 0.32 tolerated(0.64) benign(0.03) TCGA-AZ-4315-01 21 43309215 43309215 A G C2CD2 3'UTR 0.41 TCGA-AZ-4315-01 21 43792751 43792751 C T TMPRSS3 3'UTR 0.39 TCGA-AZ-4315-01 21 43792879 43792879 T G TMPRSS3 Missense_Mutation p.K453Q 0.40 deleterious_low_confidence(0.04) benign(0.006) TCGA-AZ-4315-01 21 43846919 43846919 A C UBASH3A Missense_Mutation p.Q387P 0.19 tolerated(0.06) possibly_damaging(0.616) TCGA-AZ-4315-01 21 43864714 43864714 G A UBASH3A Silent p.P603P 0.22 TCGA-AZ-4315-01 21 43892904 43892904 G A RSPH1 3'UTR 0.31 TCGA-AZ-4315-01 21 43913094 43913094 G A RSPH1 Silent p.F50F 0.37 TCGA-AZ-4315-01 21 44185598 44185598 G T PDE9A Missense_Mutation p.M450I 0.09 tolerated(0.58) benign(0.029) TCGA-AZ-4315-01 21 44323721 44323721 G A NDUFV3 Missense_Mutation p.R200Q 0.44 tolerated(0.41) benign(0.001) TCGA-AZ-4315-01 21 45540240 45540240 G A PWP2 Nonsense_Mutation p.W400* 0.38 TCGA-AZ-4315-01 21 45655325 45655325 T C ICOSLG Missense_Mutation p.D176G 0.35 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 21 45709596 45709596 G A AIRE Missense_Mutation p.E237K 0.33 deleterious(0.02) probably_damaging(0.958) TCGA-AZ-4315-01 21 45736396 45736396 G A PFKL Missense_Mutation p.D309N 0.30 deleterious(0) benign(0.004) TCGA-AZ-4315-01 21 45819241 45819241 T C TRPM2 Missense_Mutation p.S709P 0.36 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 21 45959621 45959621 T C KRTAP10-1 Missense_Mutation p.Q138R 0.34 tolerated(0.12) unknown(0) TCGA-AZ-4315-01 21 46011319 46011319 G T KRTAP10-6 Nonsense_Mutation p.C349* 0.29 TCGA-AZ-4315-01 21 46011652 46011652 G T KRTAP10-6 Nonsense_Mutation p.C238* 0.29 TCGA-AZ-4315-01 21 46596229 46596229 G A ADARB1 Missense_Mutation p.D205N 0.33 tolerated(0.31) probably_damaging(0.962) TCGA-AZ-4315-01 21 46687332 46687332 C A POFUT2 Intron 0.24 TCGA-AZ-4315-01 21 46876320 46876320 C T COL18A1 Intron 0.46 TCGA-AZ-4315-01 21 47423781 47423781 C A COL6A1 Missense_Mutation p.P981T 0.25 tolerated(0.1) probably_damaging(0.969) TCGA-AZ-4315-01 21 47537810 47537810 A G COL6A2 Missense_Mutation p.E359G 0.26 deleterious(0.02) benign(0.155) TCGA-AZ-4315-01 21 47570418 47570418 G A FTCD Nonsense_Mutation p.Q220* 0.24 TCGA-AZ-4315-01 21 47957411 47957411 C T DIP2A Missense_Mutation p.A587V 0.19 tolerated(1) benign(0.015) TCGA-AZ-4315-01 21 48056859 48056859 G T PRMT2 5'UTR 0.28 TCGA-AZ-4315-01 21 48068442 48068442 G A PRMT2 Missense_Mutation p.E134K 0.37 tolerated(0.44) possibly_damaging(0.626) TCGA-AZ-4315-01 22 16449061 16449061 C T OR11H1 Silent p.G248G 0.32 TCGA-AZ-4315-01 22 17071899 17071899 G A CCT8L2 Silent p.L514L 0.36 TCGA-AZ-4315-01 22 17309766 17309766 A G HSFY1P1 RNA 0.42 TCGA-AZ-4315-01 22 18003180 18003180 C T CECR2 Missense_Mutation p.R290C 0.35 deleterious(0) probably_damaging(0.949) TCGA-AZ-4315-01 22 18065388 18065388 G A SLC25A18 Missense_Mutation p.D87N 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 22 18138532 18138532 G A BCL2L13 Missense_Mutation p.V19I 0.39 tolerated(0.05) benign(0.036) TCGA-AZ-4315-01 22 18382251 18382251 T G MICAL3 Missense_Mutation p.K304T 0.29 probably_damaging(0.998) TCGA-AZ-4315-01 22 18387511 18387511 G A MICAL3 Missense_Mutation p.A120V 0.32 probably_damaging(0.985) TCGA-AZ-4315-01 22 18613970 18613970 G T TUBA8 3'UTR 0.43 TCGA-AZ-4315-01 22 18897697 18897697 C T DGCR6 Missense_Mutation p.A95V 0.43 tolerated(0.25) benign(0.018) TCGA-AZ-4315-01 22 18912638 18912638 C T PRODH Missense_Mutation p.R198H 0.31 tolerated(0.06) benign(0.171) TCGA-AZ-4315-01 22 19029341 19029341 C T DGCR2 Missense_Mutation p.E380K 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-AZ-4315-01 22 19119546 19119546 G A TSSK2 Missense_Mutation p.G212S 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-AZ-4315-01 22 19373157 19373157 G A HIRA Nonsense_Mutation p.R406* 0.24 TCGA-AZ-4315-01 22 19438247 19438247 G A UFD1L Silent p.F290F 0.19 TCGA-AZ-4315-01 22 19486633 19486633 C T CDC45 Silent p.I253I 0.23 TCGA-AZ-4315-01 22 19496119 19496119 C T CDC45 Silent p.S406S 0.34 TCGA-AZ-4315-01 22 20094213 20094213 G A DGCR8 Missense_Mutation p.R663H 0.38 deleterious(0.02) probably_damaging(0.967) TCGA-AZ-4315-01 22 20103943 20103943 A C TRMT2A Missense_Mutation p.F73V 0.35 deleterious(0) possibly_damaging(0.77) TCGA-AZ-4315-01 22 20113863 20113863 G T RANBP1 Missense_Mutation p.R159S 0.48 deleterious(0) benign(0.147) TCGA-AZ-4315-01 22 20456861 20456861 A C RIMBP3 Missense_Mutation p.F1481V 0.34 deleterious(0) probably_damaging(0.921) TCGA-AZ-4315-01 22 20718516 20718516 T C USP41 Missense_Mutation p.D328G 0.30 deleterious(0.01) possibly_damaging(0.897) TCGA-AZ-4315-01 22 20731462 20731462 G A USP41 Silent p.F79F 0.33 TCGA-AZ-4315-01 22 20760916 20760916 C T ZNF74 Silent p.S531S 0.33 TCGA-AZ-4315-01 22 21105625 21105625 C T PI4KA Missense_Mutation p.A1037T 0.33 tolerated(1) benign(0) TCGA-AZ-4315-01 22 21242113 21242113 C T SNAP29 Nonsense_Mutation p.R256* 0.40 TCGA-AZ-4315-01 22 21344776 21344776 A C LZTR1 Silent p.I251I 0.37 TCGA-AZ-4315-01 22 21354079 21354079 T G THAP7 3'UTR 0.27 TCGA-AZ-4315-01 22 21388534 21388534 G A SLC7A4 5'Flank 0.30 TCGA-AZ-4315-01 22 21829525 21829525 G A TMEM191C 3'Flank 0.47 TCGA-AZ-4315-01 22 22730789 22730789 C T IGLV5-45 Missense_Mutation p.A95V 0.25 deleterious(0.04) benign(0.076) TCGA-AZ-4315-01 22 22843774 22843774 C A ZNF280B 5'UTR 0.30 TCGA-AZ-4315-01 22 22892530 22892530 A G PRAME Silent p.L191L 0.26 TCGA-AZ-4315-01 22 23063449 23063449 C T IGLV3-19 Silent p.S52S 0.34 TCGA-AZ-4315-01 22 23230427 23230427 G A IGLL5 Missense_Mutation p.S65N 0.33 tolerated_low_confidence(0.22) benign(0.067) TCGA-AZ-4315-01 22 24085928 24085928 G A ZNF70 3'UTR 0.32 TCGA-AZ-4315-01 22 24134046 24134046 C T SMARCB1 Missense_Mutation p.S66L 0.48 tolerated_low_confidence(0.3) benign(0.001) TCGA-AZ-4315-01 22 24455704 24455704 A G CABIN1 Missense_Mutation p.D426G 0.27 deleterious(0.04) probably_damaging(0.995) TCGA-AZ-4315-01 22 24562625 24562625 C T CABIN1 Missense_Mutation p.P1676S 0.35 tolerated(0.32) benign(0.006) TCGA-AZ-4315-01 22 24580247 24580247 G A SUSD2 Missense_Mutation p.E195K 0.28 deleterious(0) possibly_damaging(0.797) TCGA-AZ-4315-01 22 24628803 24628803 G A GGT5 Missense_Mutation p.A195V 0.25 tolerated(0.27) benign(0.329) TCGA-AZ-4315-01 22 24649051 24649051 C T POM121L9P RNA 0.56 TCGA-AZ-4315-01 22 24726330 24726330 G A SPECC1L Missense_Mutation p.R776H 0.26 deleterious(0.02) possibly_damaging(0.835) TCGA-AZ-4315-01 22 24896102 24896102 C T UPB1 Silent p.F44F 0.45 TCGA-AZ-4315-01 22 25006293 25006293 G A GGT1 5'UTR 0.58 TCGA-AZ-4315-01 22 25315953 25315953 C A SGSM1 Missense_Mutation p.F1117L 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 22 26118295 26118295 G A ADRBK2 Missense_Mutation p.E649K 0.33 tolerated_low_confidence(0.39) benign(0.006) TCGA-AZ-4315-01 22 26747069 26747069 C T SEZ6L Missense_Mutation p.S820L 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-AZ-4315-01 22 26890025 26890025 A C SRRD 3'UTR 0.32 TCGA-AZ-4315-01 22 26892823 26892823 C T TFIP11 Missense_Mutation p.R490Q 0.29 deleterious(0.04) possibly_damaging(0.508) TCGA-AZ-4315-01 22 26899690 26899690 C T TFIP11 Missense_Mutation p.R197H 0.24 deleterious(0.01) possibly_damaging(0.874) TCGA-AZ-4315-01 22 26997968 26997968 T G CRYBB1 Missense_Mutation p.K150N 0.33 deleterious(0.01) possibly_damaging(0.826) TCGA-AZ-4315-01 22 28195593 28195593 G T MN1 Missense_Mutation p.F313L 0.33 probably_damaging(0.979) TCGA-AZ-4315-01 22 28292578 28292578 C T PITPNB Missense_Mutation p.E112K 0.20 deleterious(0.04) possibly_damaging(0.503) TCGA-AZ-4315-01 22 29439408 29439408 G A ZNRF3 Missense_Mutation p.R208H 0.33 deleterious(0.02) probably_damaging(0.932) TCGA-AZ-4315-01 22 29442780 29442780 G A ZNRF3 Missense_Mutation p.R274H 0.22 tolerated(0.15) benign(0.004) TCGA-AZ-4315-01 22 29684726 29684726 C T EWSR1 Missense_Mutation p.R315C 0.32 tolerated(0.12) unknown(0) TCGA-AZ-4315-01 22 29747765 29747765 C T AP1B1 Missense_Mutation p.D330N 0.65 deleterious(0) possibly_damaging(0.779) TCGA-AZ-4315-01 22 29885256 29885256 G A NEFH Missense_Mutation p.E543K 0.36 tolerated(0.13) unknown(0) TCGA-AZ-4315-01 22 30032763 30032763 C A NF2 Silent p.L46L 0.31 TCGA-AZ-4315-01 22 30032824 30032824 A G NF2 Missense_Mutation p.T67A 0.30 tolerated(0.76) benign(0.001) TCGA-AZ-4315-01 22 30416563 30416563 G A MTMR3 Missense_Mutation p.R972H 0.21 tolerated_low_confidence(0.06) benign(0.005) TCGA-AZ-4315-01 22 30775597 30775597 C T RNF215 Missense_Mutation p.D376N 0.41 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-AZ-4315-01 22 31022662 31022662 C T TCN2 3'UTR 0.30 TCGA-AZ-4315-01 22 31266543 31266543 C T OSBP2 Silent p.G327G 0.33 TCGA-AZ-4315-01 22 31328629 31328629 C T MORC2 Missense_Mutation p.A822T 0.38 tolerated_low_confidence(0.17) benign(0.002) TCGA-AZ-4315-01 22 31338200 31338200 A G MORC2 Missense_Mutation p.V100A 0.33 tolerated(1) benign(0.099) TCGA-AZ-4315-01 22 31601137 31601137 T C RNF185 3'UTR 0.35 TCGA-AZ-4315-01 22 32109489 32109489 C A PRR14L Nonsense_Mutation p.E1446* 0.14 TCGA-AZ-4315-01 22 32109581 32109581 G A PRR14L Missense_Mutation p.S1415L 0.36 tolerated(1) benign(0.001) TCGA-AZ-4315-01 22 32756539 32756539 G A RFPL3 Missense_Mutation p.R225H 0.38 tolerated(0.53) benign(0.002) TCGA-AZ-4315-01 22 32828360 32828360 G A BPIFC Silent p.F383F 0.31 TCGA-AZ-4315-01 22 33670313 33670313 G A LARGE 3'UTR 0.30 TCGA-AZ-4315-01 22 35481779 35481779 A G ISX 3'UTR 0.31 TCGA-AZ-4315-01 22 35947834 35947834 C T RASD2 Missense_Mutation p.L186F 0.33 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 22 36013318 36013318 G T MB 5'UTR 0.43 TCGA-AZ-4315-01 22 36054827 36054827 G T APOL6 Missense_Mutation p.K72N 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-AZ-4315-01 22 36715604 36715604 C T MYH9 Silent p.A363A 0.44 TCGA-AZ-4315-01 22 37273969 37273969 C A NCF4 3'UTR 0.20 TCGA-AZ-4315-01 22 37334027 37334027 C T CSF2RB Missense_Mutation p.S726L 0.35 tolerated(0.42) benign(0.002) TCGA-AZ-4315-01 22 37535236 37535236 G A IL2RB Silent p.I103I 0.34 TCGA-AZ-4315-01 22 37602853 37602853 C A SSTR3 Silent p.R330R 0.24 TCGA-AZ-4315-01 22 38014500 38014500 G A GGA1 Missense_Mutation p.E84K 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 22 38349119 38349119 C A C22orf23 Missense_Mutation p.G13V 0.45 deleterious(0) possibly_damaging(0.876) TCGA-AZ-4315-01 22 38468557 38468557 C T PICK1 Silent p.F210F 0.44 TCGA-AZ-4315-01 22 38494163 38494163 G A BAIAP2L2 Silent p.L124L 0.43 TCGA-AZ-4315-01 22 39387510 39387510 G T APOBEC3B Missense_Mutation p.E299D 0.71 tolerated(0.22) probably_damaging(0.965) TCGA-AZ-4315-01 22 39411605 39411605 C T APOBEC3C Missense_Mutation p.P8L 0.23 tolerated(0.14) probably_damaging(0.999) TCGA-AZ-4315-01 22 39411658 39411658 G A APOBEC3C Missense_Mutation p.E26K 0.33 tolerated(0.36) benign(0.001) TCGA-AZ-4315-01 22 39413999 39413999 C T APOBEC3C Missense_Mutation p.L135F 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 22 39530585 39530585 C T CBX7 Missense_Mutation p.R140H 0.32 tolerated(0.07) benign(0.23) TCGA-AZ-4315-01 22 39908420 39908420 G A MIEF1 Missense_Mutation p.R169Q 0.36 tolerated(1) probably_damaging(0.992) TCGA-AZ-4315-01 22 40080508 40080508 C T CACNA1I Intron 0.52 TCGA-AZ-4315-01 22 40139545 40139545 G T ENTHD1 3'UTR 0.46 TCGA-AZ-4315-01 22 40139721 40139721 A G ENTHD1 Missense_Mutation p.V596A 0.30 tolerated(0.35) unknown(0) TCGA-AZ-4315-01 22 40139873 40139873 C A ENTHD1 Missense_Mutation p.K545N 0.37 tolerated(1) benign(0) TCGA-AZ-4315-01 22 40356095 40356095 G A GRAP2 Silent p.E69E 0.27 TCGA-AZ-4315-01 22 40762493 40762493 C T ADSL Silent p.S474S 0.36 TCGA-AZ-4315-01 22 40801718 40801718 C T SGSM3 Silent p.I228I 0.35 TCGA-AZ-4315-01 22 41077826 41077826 G A MCHR1 Missense_Mutation p.R388H 0.35 deleterious(0) possibly_damaging(0.818) TCGA-AZ-4315-01 22 41253188 41253188 G A XPNPEP3 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) benign(0.006) TCGA-AZ-4315-01 22 42089506 42089506 G A C22orf46 Missense_Mutation p.E86K 0.42 tolerated(0.25) benign(0.001) TCGA-AZ-4315-01 22 42093264 42093264 C T C22orf46 3'UTR 0.33 TCGA-AZ-4315-01 22 42191507 42191507 G A MEI1 Silent p.S1209S 0.38 TCGA-AZ-4315-01 22 42204916 42204916 G A CCDC134 Missense_Mutation p.A8T 0.25 tolerated_low_confidence(0.51) unknown(0) TCGA-AZ-4315-01 22 42209289 42209289 A G CCDC134 Missense_Mutation p.N111S 0.45 deleterious(0.02) probably_damaging(0.987) TCGA-AZ-4315-01 22 42264771 42264771 C A SREBF2 Missense_Mutation p.A232D 0.39 tolerated(0.35) possibly_damaging(0.488) TCGA-AZ-4315-01 22 42385644 42385644 G A SEPT3 Missense_Mutation p.A209T 0.47 deleterious(0.02) possibly_damaging(0.489) TCGA-AZ-4315-01 22 42607210 42607210 C T TCF20 Missense_Mutation p.A1368T 0.33 benign(0.283) TCGA-AZ-4315-01 22 42608547 42608547 T A TCF20 Missense_Mutation p.K922I 0.30 probably_damaging(0.943) TCGA-AZ-4315-01 22 42609216 42609216 C T TCF20 Missense_Mutation p.S699N 0.27 benign(0.007) TCGA-AZ-4315-01 22 42609228 42609228 C T TCF20 Missense_Mutation p.R695K 0.32 probably_damaging(0.989) TCGA-AZ-4315-01 22 42905049 42905049 G T RRP7A 3'Flank 0.33 TCGA-AZ-4315-01 22 42910160 42910160 C A RRP7A Nonsense_Mutation p.E237* 0.33 TCGA-AZ-4315-01 22 43206947 43206947 G A ARFGAP3 Silent p.Y356Y 0.31 TCGA-AZ-4315-01 22 43231405 43231405 G A ARFGAP3 Missense_Mutation p.S119L 0.34 deleterious(0.03) benign(0.26) TCGA-AZ-4315-01 22 43272243 43272243 C T PACSIN2 Silent p.S416S 0.38 TCGA-AZ-4315-01 22 43284694 43284694 C A PACSIN2 Missense_Mutation p.K188N 0.41 deleterious(0) probably_damaging(0.963) TCGA-AZ-4315-01 22 43563083 43563083 A G TTLL12 3'UTR 0.38 TCGA-AZ-4315-01 22 43616481 43616481 G A SCUBE1 Silent p.I554I 0.30 TCGA-AZ-4315-01 22 43651518 43651518 G A SCUBE1 Intron 0.28 TCGA-AZ-4315-01 22 43654301 43654301 A G SCUBE1 Silent p.C217C 0.37 TCGA-AZ-4315-01 22 43831012 43831012 G A MPPED1 Missense_Mutation p.V95I 0.39 tolerated(1) benign(0.015) TCGA-AZ-4315-01 22 43870767 43870767 G A MPPED1 Silent p.S186S 0.26 TCGA-AZ-4315-01 22 43926757 43926757 G A EFCAB6 Missense_Mutation p.R1441C 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 22 44011785 44011785 G A EFCAB6 Missense_Mutation p.A828V 0.36 tolerated(0.06) benign(0.206) TCGA-AZ-4315-01 22 44151703 44151703 C T EFCAB6 Silent p.G150G 0.38 TCGA-AZ-4315-01 22 44681350 44681350 G A KIAA1644 Missense_Mutation p.A186V 0.30 tolerated_low_confidence(0.15) benign(0.015) TCGA-AZ-4315-01 22 44681516 44681516 A G KIAA1644 Missense_Mutation p.Y131H 0.07 deleterious(0.01) benign(0.361) TCGA-AZ-4315-01 22 45075573 45075573 C T PRR5 5'UTR 0.36 TCGA-AZ-4315-01 22 45685024 45685024 C T UPK3A Missense_Mutation p.L191F 0.43 tolerated(0.71) benign(0.008) TCGA-AZ-4315-01 22 45782906 45782906 T C SMC1B Silent p.R584R 0.34 TCGA-AZ-4315-01 22 45792321 45792321 C T SMC1B Missense_Mutation p.A387T 0.35 tolerated(0.06) possibly_damaging(0.806) TCGA-AZ-4315-01 22 45802435 45802435 T G SMC1B Missense_Mutation p.K174T 0.46 tolerated(0.11) benign(0.258) TCGA-AZ-4315-01 22 46653425 46653425 G A PKDREJ Missense_Mutation p.S1932L 0.33 deleterious(0.02) possibly_damaging(0.725) TCGA-AZ-4315-01 22 46653945 46653945 C A PKDREJ Missense_Mutation p.D1759Y 0.37 deleterious(0.01) probably_damaging(0.969) TCGA-AZ-4315-01 22 46656446 46656446 G A PKDREJ Missense_Mutation p.S925L 0.37 tolerated(0.17) benign(0.021) TCGA-AZ-4315-01 22 46704081 46704081 C T GTSE1 Silent p.F38F 0.28 TCGA-AZ-4315-01 22 46765643 46765643 C T CELSR1 Silent p.S2606S 0.57 TCGA-AZ-4315-01 22 46931428 46931428 G T CELSR1 Missense_Mutation p.S547Y 0.19 deleterious(0.01) probably_damaging(0.956) TCGA-AZ-4315-01 22 47857237 47857237 G A LL22NC03-75H12.2 3'UTR 0.25 TCGA-AZ-4315-01 22 50192701 50192701 C T BRD1 Missense_Mutation p.D531N 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 22 50282407 50282407 C T ZBED4 3'UTR 0.50 TCGA-AZ-4315-01 22 50580545 50580545 A G MOV10L1 Silent p.G702G 0.20 TCGA-AZ-4315-01 22 50596663 50596663 C T MOV10L1 Intron 0.31 TCGA-AZ-4315-01 22 50688876 50688876 C T HDAC10 Missense_Mutation p.D91N 0.40 tolerated(0.12) benign(0.113) TCGA-AZ-4315-01 22 50897730 50897730 T C SBF1 Silent p.G1260G 0.33 TCGA-AZ-4315-01 22 50941845 50941845 G A LMF2 Missense_Mutation p.S700L 0.23 tolerated(0.18) benign(0.005) TCGA-AZ-4315-01 22 50962816 50962816 T C SCO2 Missense_Mutation p.T9A 0.29 tolerated_low_confidence(0.06) benign(0.002) TCGA-AZ-4315-01 22 50989249 50989249 C T KLHDC7B 3'UTR 0.38 TCGA-AZ-4315-01 22 51133276 51133276 G A SHANK3 Silent p.R368R 0.21 TCGA-AZ-4315-01 22 51182577 51182577 C T ACR Silent p.R218R 0.32 TCGA-AZ-4315-01 22 51207890 51207890 A G RABL2B Missense_Mutation p.V166A 0.28 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 2 100006711 100006711 T C EIF5B Silent p.N811N 0.13 TCGA-AZ-4315-01 2 100022814 100022814 T C REV1 Missense_Mutation p.K863E 0.28 tolerated(0.1) benign(0.044) TCGA-AZ-4315-01 2 100194798 100194798 A G AFF3 Missense_Mutation p.F995S 0.27 deleterious(0) benign(0.065) TCGA-AZ-4315-01 2 100900699 100900699 C T LONRF2 3'UTR 0.29 TCGA-AZ-4315-01 2 10091975 10091975 T C GRHL1 Missense_Mutation p.Y5H 0.40 tolerated(0.58) benign(0) TCGA-AZ-4315-01 2 10095062 10095062 T C GRHL1 Silent p.V13V 0.28 TCGA-AZ-4315-01 2 101010201 101010201 C T CHST10 Missense_Mutation p.E193K 0.26 tolerated(0.18) possibly_damaging(0.883) TCGA-AZ-4315-01 2 10104149 10104149 A C GRHL1 Missense_Mutation p.H294P 0.43 tolerated(0.15) possibly_damaging(0.545) TCGA-AZ-4315-01 2 10132152 10132152 C T GRHL1 Missense_Mutation p.P447S 0.34 tolerated(1) benign(0.005) TCGA-AZ-4315-01 2 10192408 10192408 C T KLF11 Missense_Mutation p.S438L 0.45 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 102013852 102013852 G A RFX8 3'Flank 0.38 TCGA-AZ-4315-01 2 102507646 102507646 C T MAP4K4 Missense_Mutation p.R1219W 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 102804373 102804373 T C IL1RL2 Missense_Mutation p.S16P 0.38 tolerated(0.14) benign(0.176) TCGA-AZ-4315-01 2 102808544 102808544 G A IL1RL2 Silent p.P151P 0.33 TCGA-AZ-4315-01 2 103040381 103040381 C T IL18RAP Nonsense_Mutation p.R61* 0.35 TCGA-AZ-4315-01 2 103053686 103053686 C A IL18RAP Silent p.L198L 0.28 TCGA-AZ-4315-01 2 103318936 103318936 G T SLC9A2 Missense_Mutation p.R607I 0.33 deleterious(0.01) possibly_damaging(0.794) TCGA-AZ-4315-01 2 105472943 105472943 C T POU3F3 Silent p.F325F 0.38 TCGA-AZ-4315-01 2 105859134 105859134 C T GPR45 Silent p.F273F 0.32 TCGA-AZ-4315-01 2 107040974 107040974 T G RGPD3 Missense_Mutation p.K1150T 0.58 deleterious(0) possibly_damaging(0.877) TCGA-AZ-4315-01 2 10712274 10712274 G A NOL10 Nonsense_Mutation p.R664* 0.24 TCGA-AZ-4315-01 2 108487484 108487484 C T RGPD4 Silent p.C1008C 0.32 TCGA-AZ-4315-01 2 108487563 108487563 G T RGPD4 Missense_Mutation p.D1035Y 0.39 deleterious(0) probably_damaging(0.989) TCGA-AZ-4315-01 2 108618396 108618396 A G SLC5A7 Missense_Mutation p.D214G 0.31 tolerated(0.16) benign(0.013) TCGA-AZ-4315-01 2 108626705 108626705 C T SLC5A7 Silent p.I377I 0.34 TCGA-AZ-4315-01 2 109002692 109002692 G A SULT1C4 Silent p.K220K 0.34 TCGA-AZ-4315-01 2 10904521 10904521 G A ATP6V1C2 Silent p.P116P 0.38 TCGA-AZ-4315-01 2 109086608 109086608 G A GCC2 Missense_Mutation p.E275K 0.35 tolerated(0.6) benign(0) TCGA-AZ-4315-01 2 109369912 109369912 G A RANBP2 Missense_Mutation p.A650T 0.22 deleterious(0.03) benign(0.136) TCGA-AZ-4315-01 2 109384779 109384779 A C RANBP2 Missense_Mutation p.N2595T 0.25 tolerated(0.2) benign(0.024) TCGA-AZ-4315-01 2 109513218 109513218 C T EDAR 3'UTR 0.24 TCGA-AZ-4315-01 2 110303553 110303553 G A SEPT10 Intron 0.40 TCGA-AZ-4315-01 2 110350673 110350673 C T SEPT10 Silent p.T18T 0.29 TCGA-AZ-4315-01 2 11052757 11052757 G A KCNF1 Missense_Mutation p.D69N 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 11053425 11053425 G A KCNF1 Silent p.A291A 0.44 TCGA-AZ-4315-01 2 110672034 110672034 C T LIMS3 Missense_Mutation p.A130V 0.23 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 110919254 110919254 A G NPHP1 Missense_Mutation p.Y350H 0.35 tolerated(0.46) benign(0.063) TCGA-AZ-4315-01 2 111397422 111397422 C T BUB1 Missense_Mutation p.D987N 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 111411069 111411069 C T BUB1 Silent p.A636A 0.35 TCGA-AZ-4315-01 2 111556203 111556203 C T ACOXL Missense_Mutation p.T121M 0.35 deleterious(0.05) benign(0.344) TCGA-AZ-4315-01 2 112526926 112526926 C T ANAPC1 Missense_Mutation p.R1926Q 0.32 tolerated(0.09) probably_damaging(0.965) TCGA-AZ-4315-01 2 112630793 112630793 C T ANAPC1 Intron 0.30 TCGA-AZ-4315-01 2 112839000 112839000 T C TMEM87B Missense_Mutation p.I248T 0.34 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 2 113069447 113069447 G A ZC3H6 Missense_Mutation p.R227Q 0.42 tolerated(0.1) probably_damaging(0.994) TCGA-AZ-4315-01 2 113079429 113079429 A C ZC3H6 Missense_Mutation p.K358T 0.28 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 2 11341473 11341473 C A ROCK2 Nonsense_Mutation p.E896* 0.33 TCGA-AZ-4315-01 2 113496590 113496590 A C CKAP2L Missense_Mutation p.F683C 0.39 deleterious(0) possibly_damaging(0.641) TCGA-AZ-4315-01 2 11362292 11362292 C T ROCK2 Missense_Mutation p.R339Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 11427804 11427804 T G ROCK2 Missense_Mutation p.N67T 0.36 deleterious(0) benign(0.265) TCGA-AZ-4315-01 2 114386207 114386207 G A RABL2A Silent p.P8P 0.19 TCGA-AZ-4315-01 2 114398994 114398994 C T RABL2A Silent p.F157F 0.26 TCGA-AZ-4315-01 2 114399376 114399376 C T RABL2A Nonsense_Mutation p.R175* 0.24 TCGA-AZ-4315-01 2 115919789 115919789 C T DPP10 Intron 0.36 TCGA-AZ-4315-01 2 116066843 116066843 G T DPP10 Missense_Mutation p.R34I 0.37 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 2 116497364 116497364 A C DPP10 Missense_Mutation p.E253D 0.34 tolerated(0.08) benign(0.039) TCGA-AZ-4315-01 2 116548905 116548905 G A DPP10 Missense_Mutation p.R562Q 0.28 tolerated(0.1) benign(0.065) TCGA-AZ-4315-01 2 116594311 116594311 G A DPP10 Missense_Mutation p.G728E 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 2 11770213 11770213 G A GREB1 Missense_Mutation p.R1530Q 0.30 deleterious(0) probably_damaging(0.964) TCGA-AZ-4315-01 2 11772086 11772086 G A GREB1 Missense_Mutation p.E1555K 0.40 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 11772140 11772140 G A GREB1 Missense_Mutation p.V1573M 0.35 tolerated(0.16) probably_damaging(0.989) TCGA-AZ-4315-01 2 118578755 118578755 C T DDX18 Missense_Mutation p.S178L 0.35 tolerated(0.12) benign(0.026) TCGA-AZ-4315-01 2 119729104 119729104 G A MARCO Missense_Mutation p.A152T 0.28 tolerated(0.22) benign(0.27) TCGA-AZ-4315-01 2 120194679 120194679 C T TMEM37 Missense_Mutation p.A79V 0.27 deleterious(0.02) possibly_damaging(0.547) TCGA-AZ-4315-01 2 120438837 120438837 C T TMEM177 Silent p.G136G 0.40 TCGA-AZ-4315-01 2 120643419 120643419 T C PTPN4 Silent p.R212R 0.29 TCGA-AZ-4315-01 2 120836075 120836075 G T EPB41L5 Missense_Mutation p.D241Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 122227526 122227526 G A CLASP1 Silent p.F241F 0.29 TCGA-AZ-4315-01 2 122484959 122484959 C T NIFK 3'UTR 0.11 TCGA-AZ-4315-01 2 122516312 122516312 G T TSN Nonsense_Mutation p.E63* 0.31 TCGA-AZ-4315-01 2 122518994 122518994 G A TSN Silent p.E89E 0.37 TCGA-AZ-4315-01 2 124783205 124783205 G T CNTNAP5 5'UTR 0.32 TCGA-AZ-4315-01 2 125175037 125175037 G T CNTNAP5 Missense_Mutation p.M133I 0.36 tolerated(0.09) benign(0.003) TCGA-AZ-4315-01 2 125367499 125367499 T C CNTNAP5 Splice_Site p.X625_splice 0.31 TCGA-AZ-4315-01 2 125547520 125547520 C T CNTNAP5 Missense_Mutation p.R931C 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 125671941 125671941 A G CNTNAP5 3'UTR 0.32 TCGA-AZ-4315-01 2 125672015 125672015 C T CNTNAP5 3'UTR 0.40 TCGA-AZ-4315-01 2 128017016 128017016 C T ERCC3 Silent p.T691T 0.21 TCGA-AZ-4315-01 2 128460251 128460251 G A WDR33 3'UTR 0.31 TCGA-AZ-4315-01 2 128495393 128495393 C T WDR33 Intron 0.29 TCGA-AZ-4315-01 2 128627099 128627099 C T AMMECR1L Missense_Mutation p.R218Q 0.33 tolerated(0.1) benign(0.141) TCGA-AZ-4315-01 2 12880833 12880833 G A TRIB2 Silent p.S315S 0.22 TCGA-AZ-4315-01 2 12880875 12880875 G A TRIB2 Silent p.V329V 0.30 TCGA-AZ-4315-01 2 130739695 130739695 T C RAB6C 3'UTR 0.30 TCGA-AZ-4315-01 2 130832321 130832321 G A POTEF Silent p.I908I 0.14 TCGA-AZ-4315-01 2 130897802 130897802 C T CCDC74B Missense_Mutation p.E276K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 131132385 131132385 G A PTPN18 3'UTR 0.27 TCGA-AZ-4315-01 2 131487396 131487396 T C GPR148 Silent p.I224I 0.44 TCGA-AZ-4315-01 2 131487572 131487572 A G GPR148 Missense_Mutation p.D283G 0.42 deleterious(0.01) probably_damaging(0.979) TCGA-AZ-4315-01 2 131487848 131487848 C A GPR148 3'UTR 0.31 TCGA-AZ-4315-01 2 131525307 131525307 C T AMER3 3'UTR 0.27 TCGA-AZ-4315-01 2 131674495 131674495 G A ARHGEF4 5'UTR 0.26 TCGA-AZ-4315-01 2 132165689 132165689 T G LINC01120 RNA 0.30 TCGA-AZ-4315-01 2 132277672 132277672 C T AC093838.4 Intron 0.24 TCGA-AZ-4315-01 2 133402909 133402909 G A GPR39 Silent p.S364S 0.29 TCGA-AZ-4315-01 2 133426001 133426001 A G LYPD1 Silent p.C54C 0.23 TCGA-AZ-4315-01 2 133430848 133430848 C T NCKAP5 3'UTR 0.37 TCGA-AZ-4315-01 2 133751795 133751795 C T NCKAP5 Missense_Mutation p.R120Q 0.30 deleterious(0) possibly_damaging(0.876) TCGA-AZ-4315-01 2 135616876 135616876 C T ACMSD Nonsense_Mutation p.R50* 0.23 TCGA-AZ-4315-01 2 135710964 135710964 A G CCNT2 Silent p.V313V 0.38 TCGA-AZ-4315-01 2 135743982 135743982 A G MAP3K19 Silent p.G820G 0.33 TCGA-AZ-4315-01 2 135744722 135744722 A C MAP3K19 Missense_Mutation p.F574V 0.39 deleterious(0) possibly_damaging(0.791) TCGA-AZ-4315-01 2 135872863 135872863 G A RAB3GAP1 Missense_Mutation p.R187Q 0.33 tolerated(0.1) benign(0.327) TCGA-AZ-4315-01 2 135965086 135965086 A C ZRANB3 Missense_Mutation p.F976C 0.38 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 2 136073101 136073101 C T ZRANB3 Splice_Site p.X226_splice 0.29 TCGA-AZ-4315-01 2 136566201 136566201 G A LCT Missense_Mutation p.S1239L 0.39 deleterious(0.04) possibly_damaging(0.509) TCGA-AZ-4315-01 2 136566227 136566227 C A LCT Missense_Mutation p.Q1230H 0.41 tolerated(0.07) benign(0.053) TCGA-AZ-4315-01 2 136567496 136567496 G A LCT Silent p.G807G 0.35 TCGA-AZ-4315-01 2 137814328 137814328 G A THSD7B Missense_Mutation p.E160K 0.30 deleterious(0.02) benign(0.33) TCGA-AZ-4315-01 2 137852669 137852669 G T THSD7B Nonsense_Mutation p.E393* 0.36 TCGA-AZ-4315-01 2 138000026 138000026 G T THSD7B Splice_Site p.X717_splice 0.30 TCGA-AZ-4315-01 2 138400060 138400060 C T THSD7B Nonsense_Mutation p.R1271* 0.23 TCGA-AZ-4315-01 2 139308136 139308136 T G SPOPL Missense_Mutation p.S54R 0.35 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 2 139310141 139310141 C T SPOPL Nonsense_Mutation p.R124* 0.33 TCGA-AZ-4315-01 2 141135747 141135747 A G LRP1B Splice_Site p.X3546_splice 0.31 TCGA-AZ-4315-01 2 141294274 141294274 T C LRP1B Silent p.K2506K 0.44 TCGA-AZ-4315-01 2 141460073 141460073 G A LRP1B Missense_Mutation p.R2025C 0.29 benign(0.092) TCGA-AZ-4315-01 2 141571231 141571231 A G LRP1B Missense_Mutation p.I1785T 0.31 benign(0.152) TCGA-AZ-4315-01 2 141609277 141609277 G A LRP1B Missense_Mutation p.A1552V 0.22 benign(0.002) TCGA-AZ-4315-01 2 143913067 143913067 A C ARHGAP15 Missense_Mutation p.K3T 0.39 tolerated_low_confidence(0.32) benign(0) TCGA-AZ-4315-01 2 144008163 144008163 C A ARHGAP15 Silent p.V156V 0.30 TCGA-AZ-4315-01 2 148674905 148674905 G A ACVR2A Silent p.K242K 0.26 TCGA-AZ-4315-01 2 149247883 149247883 C A MBD5 Missense_Mutation p.S1328Y 0.24 tolerated_low_confidence(0.1) unknown(0) TCGA-AZ-4315-01 2 149818509 149818509 C A KIF5C Silent p.V331V 0.29 TCGA-AZ-4315-01 2 150061915 150061915 G A LYPD6B Missense_Mutation p.D76N 0.39 probably_damaging(0.993) TCGA-AZ-4315-01 2 152107541 152107541 G A RBM43 Missense_Mutation p.S318L 0.29 tolerated(0.69) benign(0.009) TCGA-AZ-4315-01 2 152319611 152319611 A C RIF1 Missense_Mutation p.N1193H 0.32 tolerated(0.06) possibly_damaging(0.896) TCGA-AZ-4315-01 2 152421648 152421648 T G NEB Missense_Mutation p.E6127D 0.40 probably_damaging(0.998) TCGA-AZ-4315-01 2 152425130 152425130 A G NEB Splice_Site p.X5878_splice 0.26 TCGA-AZ-4315-01 2 152435959 152435959 C T NEB Missense_Mutation p.A5533T 0.34 possibly_damaging(0.881) TCGA-AZ-4315-01 2 152468788 152468788 C T NEB Missense_Mutation p.R3906H 0.33 probably_damaging(0.989) TCGA-AZ-4315-01 2 152518781 152518781 C A NEB Missense_Mutation p.E1946D 0.36 probably_damaging(0.985) TCGA-AZ-4315-01 2 152534219 152534219 C T NEB Missense_Mutation p.D1212N 0.29 possibly_damaging(0.781) TCGA-AZ-4315-01 2 152541326 152541326 T C NEB Missense_Mutation p.D934G 0.33 possibly_damaging(0.659) TCGA-AZ-4315-01 2 152541479 152541479 C T NEB Missense_Mutation p.R883Q 0.33 benign(0.437) TCGA-AZ-4315-01 2 152548416 152548416 C T NEB Missense_Mutation p.E725K 0.28 probably_damaging(0.999) TCGA-AZ-4315-01 2 152548665 152548665 A C NEB Missense_Mutation p.L672V 0.32 benign(0.117) TCGA-AZ-4315-01 2 152548870 152548870 A G NEB Missense_Mutation p.Y635H 0.11 probably_damaging(0.998) TCGA-AZ-4315-01 2 152550922 152550922 T G NEB Missense_Mutation p.N604T 0.30 benign(0.287) TCGA-AZ-4315-01 2 15326904 15326904 G A NBAS Missense_Mutation p.R2225C 0.33 deleterious(0) probably_damaging(0.964) TCGA-AZ-4315-01 2 153514431 153514431 G A PRPF40A Missense_Mutation p.S891L 0.28 deleterious(0) unknown(0) TCGA-AZ-4315-01 2 153515826 153515826 C A PRPF40A Missense_Mutation p.K789N 0.33 deleterious(0) unknown(0) TCGA-AZ-4315-01 2 153520215 153520215 C A PRPF40A Missense_Mutation p.R681I 0.25 deleterious(0) benign(0.308) TCGA-AZ-4315-01 2 15359019 15359019 G A NBAS Missense_Mutation p.R2104W 0.27 deleterious(0.03) possibly_damaging(0.614) TCGA-AZ-4315-01 2 1546455 1546455 T G TPO 3'UTR 0.40 TCGA-AZ-4315-01 2 15493715 15493715 C A NBAS Nonsense_Mutation p.E1351* 0.33 TCGA-AZ-4315-01 2 15496480 15496480 C T NBAS Missense_Mutation p.R1293H 0.47 tolerated(0.49) benign(0.004) TCGA-AZ-4315-01 2 154996882 154996882 G A GALNT13 Missense_Mutation p.E59K 0.33 deleterious(0.04) benign(0.213) TCGA-AZ-4315-01 2 154996966 154996966 G A GALNT13 Missense_Mutation p.A87T 0.28 deleterious(0.04) benign(0.172) TCGA-AZ-4315-01 2 155157939 155157939 C T GALNT13 Silent p.G331G 0.34 TCGA-AZ-4315-01 2 155555517 155555517 A G KCNJ3 Missense_Mutation p.D77G 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 15557811 15557811 C T NBAS Missense_Mutation p.R868Q 0.29 deleterious(0.01) possibly_damaging(0.837) TCGA-AZ-4315-01 2 15614339 15614339 C T NBAS Missense_Mutation p.R484H 0.22 deleterious(0) probably_damaging(0.964) TCGA-AZ-4315-01 2 15629116 15629116 C A NBAS Missense_Mutation p.D329Y 0.39 deleterious(0) possibly_damaging(0.534) TCGA-AZ-4315-01 2 157186485 157186485 C T NR4A2 Missense_Mutation p.D72N 0.31 tolerated(0.07) possibly_damaging(0.776) TCGA-AZ-4315-01 2 157367332 157367332 G T GPD2 Missense_Mutation p.R100I 0.28 deleterious(0.01) benign(0.035) TCGA-AZ-4315-01 2 15760399 15760399 T C DDX1 Missense_Mutation p.F425S 0.36 tolerated(0.05) probably_damaging(0.984) TCGA-AZ-4315-01 2 158114787 158114787 A C GALNT5 Missense_Mutation p.K65Q 0.31 deleterious(0.03) possibly_damaging(0.489) TCGA-AZ-4315-01 2 158142577 158142577 C T GALNT5 Missense_Mutation p.R558W 0.30 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 158177791 158177791 G A ERMN Missense_Mutation p.H296Y 0.31 deleterious(0) probably_damaging(0.963) TCGA-AZ-4315-01 2 158406777 158406777 G T ACVR1C Missense_Mutation p.F224L 0.38 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 2 15841373 15841373 T C AC008271.1 Missense_Mutation p.V53A 0.29 benign(0.302) TCGA-AZ-4315-01 2 158594039 158594039 A C ACVR1 3'UTR 0.31 TCGA-AZ-4315-01 2 158958416 158958416 A C UPP2 Intron 0.30 TCGA-AZ-4315-01 2 159028616 159028616 G T CCDC148 3'UTR 0.31 TCGA-AZ-4315-01 2 159166107 159166107 C T CCDC148 Silent p.E316E 0.27 TCGA-AZ-4315-01 2 160035610 160035610 T C TANC1 Missense_Mutation p.S816P 0.30 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 160240185 160240185 G A BAZ2B Silent p.I1231I 0.27 TCGA-AZ-4315-01 2 160661611 160661611 G A LY75 Intron 0.12 TCGA-AZ-4315-01 2 161143568 161143568 A G RBMS1 Missense_Mutation p.F223S 0.36 deleterious(0) probably_damaging(0.965) TCGA-AZ-4315-01 2 162081209 162081209 G A TANK Missense_Mutation p.A158T 0.32 tolerated(0.28) possibly_damaging(0.874) TCGA-AZ-4315-01 2 162242048 162242048 C T PSMD14 Missense_Mutation p.S179L 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 162273212 162273212 C T TBR1 Silent p.F97F 0.22 TCGA-AZ-4315-01 2 162273314 162273314 A G TBR1 Silent p.G131G 0.26 TCGA-AZ-4315-01 2 162661060 162661060 G T SLC4A10 Nonsense_Mutation p.E78* 0.20 TCGA-AZ-4315-01 2 162719520 162719520 C A SLC4A10 Silent p.S238S 0.35 TCGA-AZ-4315-01 2 162735723 162735723 G A SLC4A10 Missense_Mutation p.R344Q 0.33 tolerated(0.3) possibly_damaging(0.461) TCGA-AZ-4315-01 2 162761399 162761399 G A SLC4A10 Silent p.K577K 0.23 TCGA-AZ-4315-01 2 163005675 163005675 T C GCG Missense_Mutation p.Y5C 0.29 tolerated(0.06) benign(0.332) TCGA-AZ-4315-01 2 163136588 163136588 G T IFIH1 Missense_Mutation p.T520N 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 165772477 165772477 T G SLC38A11 Missense_Mutation p.K152N 0.28 tolerated(0.28) possibly_damaging(0.491) TCGA-AZ-4315-01 2 165984397 165984397 T C SCN3A Missense_Mutation p.D1046G 0.34 tolerated(0.18) benign(0.001) TCGA-AZ-4315-01 2 166211131 166211131 T G SCN2A Missense_Mutation p.L1117V 0.32 tolerated(0.12) benign(0.024) TCGA-AZ-4315-01 2 166223836 166223836 C T SCN2A Silent p.F1210F 0.62 TCGA-AZ-4315-01 2 166226664 166226664 G A SCN2A Missense_Mutation p.R1235Q 0.35 deleterious(0) probably_damaging(0.951) TCGA-AZ-4315-01 2 166744881 166744881 G A TTC21B Missense_Mutation p.R1123C 0.36 deleterious(0.01) possibly_damaging(0.816) TCGA-AZ-4315-01 2 166847987 166847987 C T SCN1A Missense_Mutation p.R1933Q 0.27 tolerated(0.3) benign(0) TCGA-AZ-4315-01 2 166848686 166848686 C A SCN1A Missense_Mutation p.G1700V 0.36 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 2 166859186 166859186 A G SCN1A Silent p.I1360I 0.34 TCGA-AZ-4315-01 2 167055330 167055330 T C SCN9A Missense_Mutation p.N1929S 0.32 deleterious(0.04) benign(0.01) TCGA-AZ-4315-01 2 167055709 167055709 G T SCN9A Missense_Mutation p.L1803I 0.09 deleterious(0.01) possibly_damaging(0.511) TCGA-AZ-4315-01 2 167129066 167129066 C T SCN9A Missense_Mutation p.S1054N 0.32 tolerated(0.14) benign(0.245) TCGA-AZ-4315-01 2 167141146 167141146 T C SCN9A Silent p.R597R 0.30 TCGA-AZ-4315-01 2 167288896 167288896 C T SCN7A Missense_Mutation p.E842K 0.36 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 2 167298246 167298246 A G SCN7A Missense_Mutation p.L606S 0.29 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 2 167300162 167300162 C A SCN7A Nonsense_Mutation p.E551* 0.33 TCGA-AZ-4315-01 2 167327163 167327163 C A SCN7A Missense_Mutation p.R209I 0.36 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 2 168098386 168098386 A G XIRP2 Missense_Mutation p.D381G 0.34 benign(0.105) TCGA-AZ-4315-01 2 168101234 168101234 C T XIRP2 Missense_Mutation p.S1111L 0.29 possibly_damaging(0.856) TCGA-AZ-4315-01 2 168103664 168103664 A G XIRP2 Missense_Mutation p.D1921G 0.37 benign(0.176) TCGA-AZ-4315-01 2 168105205 168105205 G T XIRP2 Missense_Mutation p.D2435Y 0.30 probably_damaging(0.922) TCGA-AZ-4315-01 2 168106561 168106561 C T XIRP2 Missense_Mutation p.P2887S 0.28 benign(0.058) TCGA-AZ-4315-01 2 168106741 168106741 T G XIRP2 Missense_Mutation p.F2947V 0.37 possibly_damaging(0.904) TCGA-AZ-4315-01 2 168107566 168107566 C T XIRP2 Missense_Mutation p.R3222C 0.25 probably_damaging(1) TCGA-AZ-4315-01 2 168107673 168107673 C T XIRP2 Silent p.D3257D 0.33 TCGA-AZ-4315-01 2 168115456 168115456 C T XIRP2 3'UTR 0.29 TCGA-AZ-4315-01 2 168116021 168116021 C A XIRP2 3'UTR 0.29 TCGA-AZ-4315-01 2 168994637 168994637 T G STK39 Missense_Mutation p.K312T 0.37 deleterious(0.05) probably_damaging(0.974) TCGA-AZ-4315-01 2 169711899 169711899 G A NOSTRIN Missense_Mutation p.R355Q 0.31 tolerated(0.3) benign(0.021) TCGA-AZ-4315-01 2 169746017 169746017 C T SPC25 Missense_Mutation p.E5K 0.38 deleterious(0.02) benign(0.012) TCGA-AZ-4315-01 2 169763190 169763190 C A G6PC2 Missense_Mutation p.L153I 0.40 deleterious(0.01) possibly_damaging(0.542) TCGA-AZ-4315-01 2 169842773 169842773 G A ABCB11 Silent p.F310F 0.28 TCGA-AZ-4315-01 2 169996997 169996997 G T LRP2 Nonsense_Mutation p.C4389* 0.36 TCGA-AZ-4315-01 2 170002290 170002290 G A LRP2 Nonsense_Mutation p.R4319* 0.23 TCGA-AZ-4315-01 2 170011107 170011107 G T LRP2 Missense_Mutation p.S4053Y 0.31 benign(0.308) TCGA-AZ-4315-01 2 170025143 170025143 G A LRP2 Silent p.F3847F 0.37 TCGA-AZ-4315-01 2 170042252 170042252 A C LRP2 Missense_Mutation p.I3202M 0.34 possibly_damaging(0.873) TCGA-AZ-4315-01 2 170063707 170063707 G A LRP2 Missense_Mutation p.R2175W 0.31 probably_damaging(0.945) TCGA-AZ-4315-01 2 170129517 170129517 C A LRP2 Missense_Mutation p.R679I 0.23 benign(0.062) TCGA-AZ-4315-01 2 170177303 170177303 C T LRP2 Silent p.A57A 0.35 TCGA-AZ-4315-01 2 170411727 170411727 T G FASTKD1 Missense_Mutation p.K374T 0.32 deleterious(0.05) benign(0.043) TCGA-AZ-4315-01 2 170460577 170460577 G A PPIG Missense_Mutation p.R9Q 0.23 tolerated(0.16) benign(0.426) TCGA-AZ-4315-01 2 170728793 170728793 T C UBR3 Missense_Mutation p.V198A 0.31 tolerated(0.75) benign(0.014) TCGA-AZ-4315-01 2 170780653 170780653 G A UBR3 Missense_Mutation p.M664I 0.37 tolerated(0.16) benign(0.358) TCGA-AZ-4315-01 2 171300522 171300522 C A MYO3B Missense_Mutation p.S899Y 0.22 deleterious(0.02) possibly_damaging(0.733) TCGA-AZ-4315-01 2 171399436 171399436 C A MYO3B Missense_Mutation p.S1199Y 0.36 deleterious_low_confidence(0.01) benign(0.004) TCGA-AZ-4315-01 2 171509615 171509615 C A MYO3B Missense_Mutation p.S1337Y 0.29 tolerated_low_confidence(0.21) benign(0) TCGA-AZ-4315-01 2 171655438 171655438 T C ERICH2 3'UTR 0.35 TCGA-AZ-4315-01 2 171716544 171716544 T C GAD1 3'UTR 0.33 TCGA-AZ-4315-01 2 171811234 171811234 C A GORASP2 Missense_Mutation p.S214Y 0.25 deleterious(0.02) benign(0.081) TCGA-AZ-4315-01 2 172669988 172669988 C T SLC25A12 Silent p.V344V 0.36 TCGA-AZ-4315-01 2 172848401 172848401 C A HAT1 3'UTR 0.35 TCGA-AZ-4315-01 2 173460671 173460671 G T PDK1 Missense_Mutation p.D429Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 173850190 173850190 T A RAPGEF4 Silent p.I373I 0.38 TCGA-AZ-4315-01 2 173916449 173916449 G T RAPGEF4 Missense_Mutation p.R997I 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 174777845 174777845 C A SP3 Missense_Mutation p.R661I 0.28 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 2 174819619 174819619 T C SP3 Missense_Mutation p.N541D 0.23 tolerated(0.85) benign(0.027) TCGA-AZ-4315-01 2 174820115 174820115 C T SP3 Silent p.S375S 0.30 TCGA-AZ-4315-01 2 174943722 174943722 C A OLA1 Nonsense_Mutation p.E355* 0.26 TCGA-AZ-4315-01 2 175213298 175213298 T G CIR1 Missense_Mutation p.D427A 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-AZ-4315-01 2 175268834 175268834 G A SCRN3 Missense_Mutation p.G182E 0.25 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 2 175346677 175346677 G T GPR155 Missense_Mutation p.S3Y 0.38 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-AZ-4315-01 2 175711752 175711752 C A CHN1 Intron 0.35 TCGA-AZ-4315-01 2 175939253 175939253 C T ATF2 3'UTR 0.31 TCGA-AZ-4315-01 2 176973740 176973740 G A HOXD11 Missense_Mutation p.R296K 0.46 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 176973802 176973802 C T HOXD11 Missense_Mutation p.R317C 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 176981740 176981740 G T HOXD10 Missense_Mutation p.R60I 0.27 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 2 176981813 176981813 G A HOXD10 Silent p.P84P 0.32 TCGA-AZ-4315-01 2 17698205 17698205 T C RAD51AP2 Missense_Mutation p.Y493C 0.32 tolerated(0.2) benign(0.067) TCGA-AZ-4315-01 2 177017655 177017655 C T HOXD4 Silent p.D251D 0.40 TCGA-AZ-4315-01 2 177054889 177054889 A G HOXD1 3'UTR 0.25 TCGA-AZ-4315-01 2 178095685 178095685 C A NFE2L2 Missense_Mutation p.S549I 0.34 deleterious(0) possibly_damaging(0.691) TCGA-AZ-4315-01 2 178416157 178416157 C A TTC30B Missense_Mutation p.K445N 0.13 deleterious(0) possibly_damaging(0.889) TCGA-AZ-4315-01 2 178416562 178416562 C T TTC30B Silent p.Q310Q 0.29 TCGA-AZ-4315-01 2 178481943 178481943 A G TTC30A Missense_Mutation p.V496A 0.38 deleterious(0.01) possibly_damaging(0.86) TCGA-AZ-4315-01 2 178482095 178482095 C A TTC30A Missense_Mutation p.K445N 0.21 deleterious(0) probably_damaging(0.951) TCGA-AZ-4315-01 2 178482721 178482721 G A TTC30A Missense_Mutation p.R237C 0.37 deleterious(0.03) benign(0.122) TCGA-AZ-4315-01 2 179391750 179391750 G A TTN Nonsense_Mutation p.R35989* 0.36 TCGA-AZ-4315-01 2 179396618 179396618 A G TTN Silent p.F34908F 0.29 TCGA-AZ-4315-01 2 179397909 179397909 T C TTN Missense_Mutation p.D34478G 0.39 TCGA-AZ-4315-01 2 179408267 179408267 G A TTN Missense_Mutation p.R32145C 0.33 TCGA-AZ-4315-01 2 179416530 179416530 C A TTN Missense_Mutation p.R30366I 0.34 TCGA-AZ-4315-01 2 179426958 179426958 A C TTN Silent p.L27967L 0.41 TCGA-AZ-4315-01 2 179429822 179429822 G A TTN Nonsense_Mutation p.R27013* 0.34 TCGA-AZ-4315-01 2 179430301 179430301 A C TTN Missense_Mutation p.V26853G 0.25 TCGA-AZ-4315-01 2 179431355 179431355 T G TTN Missense_Mutation p.N26502H 0.27 TCGA-AZ-4315-01 2 179431401 179431401 G T TTN Missense_Mutation p.F26486L 0.41 TCGA-AZ-4315-01 2 179434850 179434850 G T TTN Missense_Mutation p.L25337I 0.33 TCGA-AZ-4315-01 2 179437434 179437434 G A TTN Silent p.I24475I 0.31 TCGA-AZ-4315-01 2 179452849 179452849 C T TTN Silent p.P21095P 0.31 TCGA-AZ-4315-01 2 179458949 179458949 C T TTN Missense_Mutation p.D19391N 0.43 TCGA-AZ-4315-01 2 179462417 179462417 C A TTN Missense_Mutation p.R19131I 0.27 TCGA-AZ-4315-01 2 179474256 179474256 G A TTN Nonsense_Mutation p.R17261* 0.36 TCGA-AZ-4315-01 2 179475091 179475091 A C TTN Missense_Mutation p.I17054M 0.35 TCGA-AZ-4315-01 2 179479494 179479494 G T TTN Intron 0.34 TCGA-AZ-4315-01 2 179482120 179482120 G A TTN Nonsense_Mutation p.R15898* 0.33 TCGA-AZ-4315-01 2 179484739 179484739 A C TTN Missense_Mutation p.S15469A 0.36 TCGA-AZ-4315-01 2 179485604 179485604 C A TTN Nonsense_Mutation p.E15245* 0.36 TCGA-AZ-4315-01 2 179486045 179486045 C A TTN Nonsense_Mutation p.G15134* 0.43 TCGA-AZ-4315-01 2 179494033 179494033 C T TTN Missense_Mutation p.D14807N 0.44 TCGA-AZ-4315-01 2 179497035 179497035 C T TTN Nonsense_Mutation p.W14529* 0.32 TCGA-AZ-4315-01 2 179558342 179558342 G A TTN Missense_Mutation p.P10530S 0.32 TCGA-AZ-4315-01 2 179569649 179569649 A G TTN Silent p.F9883F 0.33 TCGA-AZ-4315-01 2 179584978 179584978 G A TTN Silent p.F7797F 0.32 TCGA-AZ-4315-01 2 179588604 179588604 G A TTN Missense_Mutation p.R7128C 0.30 TCGA-AZ-4315-01 2 179594065 179594065 A G TTN Missense_Mutation p.V6273A 0.38 TCGA-AZ-4315-01 2 179599630 179599630 G A TTN Silent p.G5007G 0.31 TCGA-AZ-4315-01 2 179603970 179603970 C T TTN Missense_Mutation p.D4664N 0.37 TCGA-AZ-4315-01 2 179605095 179605095 G A TTN Missense_Mutation p.P4289S 0.31 TCGA-AZ-4315-01 2 179605570 179605570 T G TTN Missense_Mutation p.E4130D 0.35 TCGA-AZ-4315-01 2 179605889 179605889 G A TTN Missense_Mutation p.A4024V 0.36 TCGA-AZ-4315-01 2 179611521 179611521 G T TTN Intron 0.35 TCGA-AZ-4315-01 2 179613007 179613007 A G TTN Intron 0.35 TCGA-AZ-4315-01 2 179613951 179613951 C A TTN Intron 0.25 TCGA-AZ-4315-01 2 179616613 179616613 G T TTN Intron 0.40 TCGA-AZ-4315-01 2 179616703 179616703 G T TTN Intron 0.38 TCGA-AZ-4315-01 2 179638266 179638266 C T TTN Missense_Mutation p.R2506Q 0.32 TCGA-AZ-4315-01 2 179647626 179647626 G A TTN Missense_Mutation p.R1003C 0.33 TCGA-AZ-4315-01 2 179664562 179664562 C T TTN Missense_Mutation p.R220Q 0.35 TCGA-AZ-4315-01 2 179721001 179721001 A G CCDC141 Missense_Mutation p.Y950H 0.36 tolerated(0.1) benign(0.113) TCGA-AZ-4315-01 2 17998106 17998106 C T MSGN1 Silent p.G107G 0.28 TCGA-AZ-4315-01 2 180348149 180348149 C T ZNF385B Missense_Mutation p.A174T 0.37 deleterious(0) probably_damaging(0.93) TCGA-AZ-4315-01 2 180448783 180448783 G A ZNF385B Intron 0.30 TCGA-AZ-4315-01 2 180809776 180809776 C A CWC22 3'UTR 0.28 TCGA-AZ-4315-01 2 180810097 180810097 G T CWC22 Missense_Mutation p.S829Y 0.32 deleterious_low_confidence(0) benign(0.221) TCGA-AZ-4315-01 2 180819067 180819067 C A CWC22 Missense_Mutation p.K518N 0.26 tolerated(0.94) benign(0.017) TCGA-AZ-4315-01 2 180838420 180838420 C A CWC22 Nonsense_Mutation p.E231* 0.37 TCGA-AZ-4315-01 2 182402940 182402940 C A CERKL Nonsense_Mutation p.G550* 0.08 TCGA-AZ-4315-01 2 182409488 182409488 C T CERKL Missense_Mutation p.R461Q 0.31 tolerated(0.11) benign(0.195) TCGA-AZ-4315-01 2 182423401 182423401 C T CERKL Missense_Mutation p.E264K 0.54 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 182468643 182468643 C A CERKL Missense_Mutation p.K134N 0.27 deleterious(0) possibly_damaging(0.641) TCGA-AZ-4315-01 2 182542901 182542901 C T NEUROD1 Silent p.P229P 0.29 TCGA-AZ-4315-01 2 182543228 182543228 C T NEUROD1 Silent p.A120A 0.30 TCGA-AZ-4315-01 2 182543337 182543337 C T NEUROD1 Missense_Mutation p.R84H 0.27 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 2 182766892 182766892 C T SSFA2 Missense_Mutation p.T371M 0.35 tolerated(0.46) benign(0.01) TCGA-AZ-4315-01 2 183291544 183291544 G A PDE1A Intron 0.40 TCGA-AZ-4315-01 2 183960340 183960340 G A DUSP19 Missense_Mutation p.G203D 0.28 tolerated_low_confidence(0.66) benign(0.008) TCGA-AZ-4315-01 2 183960565 183960565 T G DUSP19 3'UTR 0.62 TCGA-AZ-4315-01 2 185803517 185803517 C A ZNF804A Missense_Mutation p.L1132I 0.38 deleterious(0.04) benign(0.041) TCGA-AZ-4315-01 2 186671980 186671980 G A FSIP2 Missense_Mutation p.V6072I 0.31 benign(0.166) TCGA-AZ-4315-01 2 186673615 186673615 A C FSIP2 Missense_Mutation p.K6617Q 0.32 possibly_damaging(0.808) TCGA-AZ-4315-01 2 187370226 187370226 C A ZC3H15 Missense_Mutation p.L256I 0.42 tolerated(0.11) benign(0.12) TCGA-AZ-4315-01 2 187511445 187511445 G T ITGAV Missense_Mutation p.D398Y 0.30 deleterious(0) possibly_damaging(0.595) TCGA-AZ-4315-01 2 187511496 187511496 G A ITGAV Missense_Mutation p.A415T 0.25 tolerated(0.64) benign(0.002) TCGA-AZ-4315-01 2 187626444 187626444 G A FAM171B Missense_Mutation p.D459N 0.30 tolerated(1) benign(0) TCGA-AZ-4315-01 2 187626902 187626902 G T FAM171B Missense_Mutation p.Q611H 0.35 tolerated(0.12) benign(0.152) TCGA-AZ-4315-01 2 189405995 189405995 G T GULP1 Missense_Mutation p.D117Y 0.29 deleterious(0) probably_damaging(0.983) TCGA-AZ-4315-01 2 189449129 189449129 T G GULP1 Missense_Mutation p.I249M 0.36 tolerated(0.24) benign(0.003) TCGA-AZ-4315-01 2 189898602 189898602 A C COL5A2 3'UTR 0.40 TCGA-AZ-4315-01 2 189904059 189904059 C T COL5A2 Silent p.S1288S 0.41 TCGA-AZ-4315-01 2 189925498 189925498 A G COL5A2 Silent p.G681G 0.33 TCGA-AZ-4315-01 2 189951476 189951476 T G COL5A2 Silent p.G222G 0.29 TCGA-AZ-4315-01 2 190732526 190732526 C A PMS1 Missense_Mutation p.L782I 0.26 tolerated(0.09) benign(0.272) TCGA-AZ-4315-01 2 191864430 191864430 A C STAT1 Missense_Mutation p.C155G 0.39 tolerated(0.39) benign(0.009) TCGA-AZ-4315-01 2 192141729 192141729 G A MYO1B Silent p.K36K 0.38 TCGA-AZ-4315-01 2 1926366 1926366 C T MYT1L Missense_Mutation p.R392Q 0.28 tolerated(0.1) probably_damaging(0.91) TCGA-AZ-4315-01 2 1946753 1946753 C T MYT1L Splice_Site p.X169_splice 0.32 TCGA-AZ-4315-01 2 196545745 196545745 G T SLC39A10 Missense_Mutation p.D327Y 0.38 tolerated(0.17) possibly_damaging(0.736) TCGA-AZ-4315-01 2 196545754 196545754 G T SLC39A10 Nonsense_Mutation p.E330* 0.34 TCGA-AZ-4315-01 2 196581642 196581642 G A SLC39A10 Missense_Mutation p.D660N 0.31 deleterious(0.02) possibly_damaging(0.879) TCGA-AZ-4315-01 2 196600781 196600781 C T SLC39A10 3'UTR 0.36 TCGA-AZ-4315-01 2 196709850 196709850 C A DNAH7 Missense_Mutation p.D2941Y 0.31 deleterious(0.03) benign(0.057) TCGA-AZ-4315-01 2 196729671 196729671 A C DNAH7 Missense_Mutation p.I2236M 0.32 tolerated(0.08) benign(0.006) TCGA-AZ-4315-01 2 196729694 196729694 G A DNAH7 Missense_Mutation p.L2229F 0.46 tolerated(0.42) benign(0.216) TCGA-AZ-4315-01 2 196822170 196822170 C A DNAH7 Nonsense_Mutation p.E965* 0.07 TCGA-AZ-4315-01 2 196837141 196837141 C A DNAH7 Missense_Mutation p.R628I 0.36 deleterious(0) benign(0.418) TCGA-AZ-4315-01 2 197002222 197002222 G A STK17B Silent p.F356F 0.27 TCGA-AZ-4315-01 2 197092850 197092850 G A HECW2 Missense_Mutation p.A1298V 0.30 deleterious(0.02) probably_damaging(0.936) TCGA-AZ-4315-01 2 197649605 197649605 C A GTF3C3 Nonsense_Mutation p.E364* 0.27 TCGA-AZ-4315-01 2 197863734 197863734 G T ANKRD44 Nonsense_Mutation p.C829* 0.29 TCGA-AZ-4315-01 2 197870577 197870577 G T ANKRD44 Missense_Mutation p.L705I 0.44 tolerated(0.19) probably_damaging(0.97) TCGA-AZ-4315-01 2 198351737 198351737 T C HSPD1 3'UTR 0.30 TCGA-AZ-4315-01 2 198460738 198460738 T C RFTN2 Missense_Mutation p.N404D 0.38 tolerated(0.14) benign(0.02) TCGA-AZ-4315-01 2 198460759 198460759 G T RFTN2 Missense_Mutation p.L397I 0.31 deleterious(0.01) possibly_damaging(0.856) TCGA-AZ-4315-01 2 198480650 198480650 G A RFTN2 Silent p.F368F 0.34 TCGA-AZ-4315-01 2 198571589 198571589 T C MARS2 Missense_Mutation p.V487A 0.33 deleterious(0.02) benign(0.341) TCGA-AZ-4315-01 2 198571922 198571922 C T MARS2 3'UTR 0.40 TCGA-AZ-4315-01 2 198949242 198949242 A G PLCL1 Missense_Mutation p.D334G 0.09 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 200213792 200213792 C T SATB2 Missense_Mutation p.E269K 0.30 tolerated(0.12) benign(0.043) TCGA-AZ-4315-01 2 200798041 200798041 A G TYW5 Missense_Mutation p.W233R 0.35 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 201284207 201284207 C T SPATS2L Missense_Mutation p.R145C 0.39 deleterious(0.04) benign(0.011) TCGA-AZ-4315-01 2 201354773 201354773 G T KCTD18 3'UTR 0.35 TCGA-AZ-4315-01 2 201407345 201407345 G A SGOL2 Missense_Mutation p.R144Q 0.35 tolerated(0.08) benign(0.153) TCGA-AZ-4315-01 2 201434664 201434664 C T SGOL2 Intron 0.32 TCGA-AZ-4315-01 2 201438448 201438448 A C SGOL2 Missense_Mutation p.N1127H 0.26 deleterious(0.04) possibly_damaging(0.627) TCGA-AZ-4315-01 2 20175417 20175417 A G WDR35 Silent p.R148R 0.37 TCGA-AZ-4315-01 2 201790606 201790606 C T ORC2 Missense_Mutation p.R367H 0.17 deleterious(0.01) benign(0.103) TCGA-AZ-4315-01 2 201791561 201791561 C T ORC2 Missense_Mutation p.R327Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 202073854 202073854 G A CASP10 Silent p.T328T 0.30 TCGA-AZ-4315-01 2 202082539 202082539 A G CASP10 3'UTR 0.37 TCGA-AZ-4315-01 2 202173902 202173902 G A ALS2CR12 Silent p.F249F 0.31 TCGA-AZ-4315-01 2 202173927 202173927 G A ALS2CR12 Missense_Mutation p.A241V 0.30 tolerated(0.17) probably_damaging(0.999) TCGA-AZ-4315-01 2 202254060 202254060 G A TRAK2 Missense_Mutation p.L454F 0.29 tolerated(0.3) benign(0.035) TCGA-AZ-4315-01 2 202400857 202400857 G A ALS2CR11 Missense_Mutation p.R465C 0.37 tolerated(0.16) benign(0.219) TCGA-AZ-4315-01 2 202514862 202514862 C T MPP4 Missense_Mutation p.E470K 0.41 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 2 203332359 203332359 T C BMPR2 Missense_Mutation p.L122S 0.33 deleterious(0.04) probably_damaging(0.932) TCGA-AZ-4315-01 2 203693877 203693877 C A ICA1L Intron 0.38 TCGA-AZ-4315-01 2 203831743 203831743 G A CARF Missense_Mutation p.R292K 0.31 tolerated(0.05) possibly_damaging(0.542) TCGA-AZ-4315-01 2 203846925 203846925 C A CARF Missense_Mutation p.S607Y 0.28 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-AZ-4315-01 2 20402613 20402613 C T SDC1 Missense_Mutation p.E283K 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 204039880 204039880 T G NBEAL1 Missense_Mutation p.F2083V 0.41 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 204064099 204064099 A G NBEAL1 Silent p.G2360G 0.31 TCGA-AZ-4315-01 2 204154519 204154519 C T CYP20A1 Nonsense_Mutation p.R335* 0.32 TCGA-AZ-4315-01 2 204736158 204736158 C T CTLA4 Missense_Mutation p.S172L 0.30 tolerated(0.11) benign(0.003) TCGA-AZ-4315-01 2 20511272 20511272 G A PUM2 Silent p.A167A 0.38 TCGA-AZ-4315-01 2 205986669 205986669 G T PARD3B Missense_Mutation p.K387N 0.50 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 2 206590801 206590801 C A NRP2 Missense_Mutation p.L329I 0.22 tolerated(1) possibly_damaging(0.669) TCGA-AZ-4315-01 2 206921026 206921026 G A INO80D Missense_Mutation p.A287V 0.35 tolerated(0.96) possibly_damaging(0.63) TCGA-AZ-4315-01 2 207169475 207169475 T C ZDBF2 Missense_Mutation p.S75P 0.34 tolerated(0.3) benign(0.307) TCGA-AZ-4315-01 2 207173757 207173757 C T ZDBF2 Missense_Mutation p.S1502F 0.33 deleterious(0) possibly_damaging(0.485) TCGA-AZ-4315-01 2 207175936 207175936 G A ZDBF2 Silent p.S2228S 0.68 TCGA-AZ-4315-01 2 207310210 207310210 C A ADAM23 Missense_Mutation p.L132I 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 2 207457393 207457393 A G ADAM23 Missense_Mutation p.I671V 0.32 tolerated(0.35) benign(0.083) TCGA-AZ-4315-01 2 207482361 207482361 G A ADAM23 3'UTR 0.33 TCGA-AZ-4315-01 2 207833053 207833053 T C CPO Missense_Mutation p.S282P 0.32 tolerated(0.54) benign(0.042) TCGA-AZ-4315-01 2 207988552 207988552 G A KLF7 Missense_Mutation p.R227W 0.33 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 2 20824514 20824514 C T HS1BP3 Silent p.S254S 0.23 TCGA-AZ-4315-01 2 208725943 208725943 T G PLEKHM3 Missense_Mutation p.K665T 0.34 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 2 209007339 209007339 G A CRYGB 3'UTR 0.36 TCGA-AZ-4315-01 2 209209849 209209849 G A PIKFYVE Missense_Mutation p.R1681Q 0.29 deleterious(0.02) benign(0.007) TCGA-AZ-4315-01 2 209307188 209307188 T C PTH2R Splice_Site p.X170_splice 0.38 TCGA-AZ-4315-01 2 210558767 210558767 G T MAP2 Nonsense_Mutation p.E625* 0.31 TCGA-AZ-4315-01 2 210559026 210559026 C T MAP2 Missense_Mutation p.S711F 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 210559864 210559864 C T MAP2 Silent p.F990F 0.32 TCGA-AZ-4315-01 2 210574869 210574869 C T MAP2 Missense_Mutation p.A1655V 0.27 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 2 210650797 210650797 A G UNC80 Missense_Mutation p.D203G 0.35 probably_damaging(0.954) TCGA-AZ-4315-01 2 210681788 210681788 C A UNC80 Missense_Mutation p.F497L 0.27 possibly_damaging(0.68) TCGA-AZ-4315-01 2 210683723 210683723 C A UNC80 Missense_Mutation p.S567Y 0.08 probably_damaging(0.989) TCGA-AZ-4315-01 2 210683747 210683747 C T UNC80 Missense_Mutation p.A575V 0.36 probably_damaging(0.981) TCGA-AZ-4315-01 2 210703946 210703946 C T UNC80 Silent p.H1014H 0.40 TCGA-AZ-4315-01 2 210737609 210737609 C T UNC80 Missense_Mutation p.S1254F 0.24 probably_damaging(0.992) TCGA-AZ-4315-01 2 210782632 210782632 C T UNC80 Missense_Mutation p.R1655C 0.29 probably_damaging(0.995) TCGA-AZ-4315-01 2 210802262 210802262 C T UNC80 Nonsense_Mutation p.R2059* 0.33 TCGA-AZ-4315-01 2 210824272 210824272 G A UNC80 Missense_Mutation p.R2483Q 0.39 probably_damaging(0.982) TCGA-AZ-4315-01 2 210968862 210968862 C T KANSL1L Missense_Mutation p.S465N 0.30 deleterious(0) possibly_damaging(0.646) TCGA-AZ-4315-01 2 211473252 211473252 G A CPS1 Missense_Mutation p.R793Q 0.34 tolerated(0.7) benign(0.001) TCGA-AZ-4315-01 2 211503910 211503910 A C CPS1 Missense_Mutation p.N962H 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 21227438 21227438 T C APOB Silent p.G3966G 0.30 TCGA-AZ-4315-01 2 212295793 212295793 A C ERBB4 Silent p.V840V 0.35 TCGA-AZ-4315-01 2 21230382 21230382 C A APOB Nonsense_Mutation p.E3120* 0.25 TCGA-AZ-4315-01 2 21241886 21241886 C A APOB Silent p.L1033L 0.33 TCGA-AZ-4315-01 2 21242657 21242657 G A APOB Silent p.G979G 0.30 TCGA-AZ-4315-01 2 213872285 213872285 G T IKZF2 Silent p.V460V 0.37 TCGA-AZ-4315-01 2 213886807 213886807 G A IKZF2 Missense_Mutation p.R208C 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-AZ-4315-01 2 215809802 215809802 C T ABCA12 Silent p.P2422P 0.26 TCGA-AZ-4315-01 2 215845310 215845310 C T ABCA12 Missense_Mutation p.R1546H 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 215851420 215851420 G T ABCA12 Missense_Mutation p.P1337T 0.29 tolerated(0.13) benign(0.424) TCGA-AZ-4315-01 2 215854296 215854296 C T ABCA12 Missense_Mutation p.R1225Q 0.33 deleterious(0.04) benign(0.04) TCGA-AZ-4315-01 2 216203538 216203538 C T ATIC Nonsense_Mutation p.R379* 0.26 TCGA-AZ-4315-01 2 216232663 216232663 C T FN1 Missense_Mutation p.R2314Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 216236972 216236972 A C FN1 Missense_Mutation p.I2125S 0.26 tolerated(0.13) possibly_damaging(0.84) TCGA-AZ-4315-01 2 216274708 216274708 C A FN1 Nonsense_Mutation p.E691* 0.36 TCGA-AZ-4315-01 2 216285506 216285506 T C FN1 Missense_Mutation p.D522G 0.29 tolerated(1) benign(0.003) TCGA-AZ-4315-01 2 217054974 217054974 G A XRCC5 Missense_Mutation p.E621K 0.56 tolerated(0.24) benign(0.283) TCGA-AZ-4315-01 2 217069114 217069114 G A XRCC5 Missense_Mutation p.D727N 0.31 deleterious(0) probably_damaging(0.927) TCGA-AZ-4315-01 2 218712581 218712581 A G TNS1 Missense_Mutation p.S762P 0.17 tolerated(0.32) benign(0.012) TCGA-AZ-4315-01 2 218712737 218712737 C T TNS1 Missense_Mutation p.E710K 0.31 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 2 218940309 218940309 C T RUFY4 Missense_Mutation p.S385L 0.33 tolerated(0.4) benign(0.001) TCGA-AZ-4315-01 2 219000016 219000016 C A CXCR2 Missense_Mutation p.F164L 0.16 tolerated(0.08) probably_damaging(0.989) TCGA-AZ-4315-01 2 219205490 219205490 C A PNKD Missense_Mutation p.L169M 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 219566590 219566590 T C STK36 Missense_Mutation p.V1269A 0.30 tolerated(0.1) benign(0.018) TCGA-AZ-4315-01 2 219603267 219603267 G A TTLL4 Missense_Mutation p.A290T 0.35 tolerated(0.2) benign(0.003) TCGA-AZ-4315-01 2 219692578 219692578 T C PRKAG3 Silent p.Q266Q 0.36 TCGA-AZ-4315-01 2 219747042 219747042 C T WNT10A Silent p.I91I 0.36 TCGA-AZ-4315-01 2 219868947 219868947 T C CCDC108 Missense_Mutation p.E1761G 0.16 tolerated(0.32) unknown(0) TCGA-AZ-4315-01 2 219896248 219896248 C A CCDC108 Missense_Mutation p.D260Y 0.35 deleterious(0.01) probably_damaging(0.981) TCGA-AZ-4315-01 2 219920121 219920121 G A IHH Silent p.F348F 0.34 TCGA-AZ-4315-01 2 219940973 219940973 C A NHEJ1 3'UTR 0.41 TCGA-AZ-4315-01 2 220074106 220074106 G A ZFAND2B 3'UTR 0.30 TCGA-AZ-4315-01 2 220155309 220155309 G A PTPRN Missense_Mutation p.A940V 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 220164795 220164795 G A PTPRN Missense_Mutation p.P450S 0.38 tolerated(0.35) benign(0.009) TCGA-AZ-4315-01 2 220342430 220342430 C T SPEG Silent p.V1583V 0.21 TCGA-AZ-4315-01 2 220342476 220342476 G A SPEG Missense_Mutation p.D1599N 0.31 possibly_damaging(0.768) TCGA-AZ-4315-01 2 220349185 220349185 G A SPEG Missense_Mutation p.E2334K 0.43 probably_damaging(0.991) TCGA-AZ-4315-01 2 220355345 220355345 G T SPEG Nonsense_Mutation p.E3046* 0.28 TCGA-AZ-4315-01 2 220379519 220379519 G A ASIC4 Missense_Mutation p.D152N 0.34 deleterious(0.02) possibly_damaging(0.747) TCGA-AZ-4315-01 2 220421413 220421413 T C OBSL1 Missense_Mutation p.T1367A 0.32 tolerated(0.67) benign(0.314) TCGA-AZ-4315-01 2 220428201 220428201 G A OBSL1 Silent p.F852F 0.28 TCGA-AZ-4315-01 2 222290667 222290667 T C EPHA4 3'UTR 0.38 TCGA-AZ-4315-01 2 222301283 222301283 G A EPHA4 Missense_Mutation p.R728C 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-4315-01 2 223065669 223065669 C T PAX3 3'UTR 0.59 TCGA-AZ-4315-01 2 223423432 223423432 C T SGPP2 Missense_Mutation p.R339C 0.70 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 223436672 223436672 A G FARSB Missense_Mutation p.V563A 0.34 deleterious(0.02) benign(0.2) TCGA-AZ-4315-01 2 223478542 223478542 C A FARSB Missense_Mutation p.D484Y 0.20 deleterious(0) probably_damaging(0.967) TCGA-AZ-4315-01 2 223918428 223918428 G A KCNE4 3'UTR 0.39 TCGA-AZ-4315-01 2 223919894 223919894 G T KCNE4 3'UTR 0.57 TCGA-AZ-4315-01 2 224462763 224462763 C A SCG2 Missense_Mutation p.S413I 0.26 deleterious(0.05) possibly_damaging(0.567) TCGA-AZ-4315-01 2 224463150 224463150 C T SCG2 Missense_Mutation p.R284H 0.29 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 224623323 224623323 A C AP1S3 3'UTR 0.34 TCGA-AZ-4315-01 2 224824355 224824355 G A MRPL44 Missense_Mutation p.S95N 0.34 tolerated(0.49) benign(0.003) TCGA-AZ-4315-01 2 225811670 225811670 G A DOCK10 Intron 0.25 TCGA-AZ-4315-01 2 226446730 226446730 G A NYAP2 Silent p.P199P 0.30 TCGA-AZ-4315-01 2 228110616 228110616 T G COL4A3 Intron 0.29 TCGA-AZ-4315-01 2 228122352 228122352 C T COL4A3 Missense_Mutation p.R341C 0.41 possibly_damaging(0.777) TCGA-AZ-4315-01 2 228416706 228416706 G T AGFG1 Missense_Mutation p.M494I 0.36 deleterious(0) benign(0.133) TCGA-AZ-4315-01 2 228476050 228476050 G T C2orf83 3'UTR 0.27 TCGA-AZ-4315-01 2 228754656 228754656 G T DAW1 Missense_Mutation p.L66F 0.35 deleterious(0.04) possibly_damaging(0.883) TCGA-AZ-4315-01 2 230377560 230377560 C T DNER Silent p.A362A 0.32 TCGA-AZ-4315-01 2 230642130 230642130 T C TRIP12 Silent p.S1735S 0.32 TCGA-AZ-4315-01 2 230643668 230643668 C T TRIP12 Silent p.A1636A 0.34 TCGA-AZ-4315-01 2 230705619 230705619 C T TRIP12 Missense_Mutation p.R309H 0.32 deleterious(0) possibly_damaging(0.572) TCGA-AZ-4315-01 2 231236556 231236556 G A SP140L Intron 0.35 TCGA-AZ-4315-01 2 231949808 231949808 C T PSMD1 Nonsense_Mutation p.R600* 0.35 TCGA-AZ-4315-01 2 231988622 231988622 T A HTR2B 5'UTR 0.43 TCGA-AZ-4315-01 2 232393229 232393229 T G NMUR1 Missense_Mutation p.Q168P 0.33 deleterious(0) possibly_damaging(0.464) TCGA-AZ-4315-01 2 233348755 233348755 C T ECEL1 Missense_Mutation p.A455T 0.37 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 2 233412965 233412965 C T TIGD1 Missense_Mutation p.R543Q 0.35 tolerated_low_confidence(0.6) benign(0.001) TCGA-AZ-4315-01 2 233710457 233710457 G C GIGYF2 Silent p.V1128V 0.27 TCGA-AZ-4315-01 2 233750061 233750061 C T NGEF Missense_Mutation p.E456K 0.28 deleterious(0.05) probably_damaging(0.972) TCGA-AZ-4315-01 2 233785248 233785248 C T NGEF Missense_Mutation p.E192K 0.40 tolerated(0.1) benign(0.168) TCGA-AZ-4315-01 2 234526745 234526745 G A UGT1A8 Missense_Mutation p.R131Q 0.35 tolerated(0.33) benign(0.001) TCGA-AZ-4315-01 2 234580888 234580888 G A UGT1A9 Missense_Mutation p.R103Q 0.33 tolerated(0.59) benign(0.001) TCGA-AZ-4315-01 2 234591315 234591315 C A UGT1A7 Silent p.L244L 0.30 TCGA-AZ-4315-01 2 234591344 234591344 G A UGT1A7 Missense_Mutation p.R254Q 0.31 deleterious(0.01) possibly_damaging(0.861) TCGA-AZ-4315-01 2 234627995 234627995 C T UGT1A4 Missense_Mutation p.P177S 0.32 deleterious(0.02) benign(0.054) TCGA-AZ-4315-01 2 234637988 234637988 G T UGT1A3 Missense_Mutation p.E72D 0.33 tolerated(0.11) benign(0.029) TCGA-AZ-4315-01 2 234652171 234652171 C A UGT1A10 Intron 0.25 TCGA-AZ-4315-01 2 234652389 234652389 G A UGT1A10 Intron 0.28 TCGA-AZ-4315-01 2 234749577 234749577 G A HJURP Nonsense_Mutation p.R617* 0.35 TCGA-AZ-4315-01 2 234750348 234750348 G T HJURP Missense_Mutation p.L360I 0.35 tolerated(0.19) benign(0.33) TCGA-AZ-4315-01 2 234926271 234926271 A C TRPM8 3'UTR 0.27 TCGA-AZ-4315-01 2 235404534 235404534 C T ARL4C 3'UTR 0.35 TCGA-AZ-4315-01 2 235404545 235404545 C T ARL4C 3'UTR 0.22 TCGA-AZ-4315-01 2 235951815 235951815 T C SH3BP4 Missense_Mutation p.V801A 0.28 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 2 237033736 237033737 - T AGAP1 3'UTR 0.29 TCGA-AZ-4315-01 2 237103586 237103586 T C ASB18 Missense_Mutation p.I444V 0.20 tolerated(0.77) benign(0.012) TCGA-AZ-4315-01 2 237233417 237233417 C T IQCA1 Missense_Mutation p.A795T 0.41 tolerated(0.36) benign(0.04) TCGA-AZ-4315-01 2 237490979 237490979 G T ACKR3 3'UTR 0.24 TCGA-AZ-4315-01 2 238249704 238249704 C T COL6A3 Missense_Mutation p.D2619N 0.37 unknown(0) TCGA-AZ-4315-01 2 238250756 238250756 C A COL6A3 Missense_Mutation p.D2573Y 0.49 unknown(0) TCGA-AZ-4315-01 2 238267192 238267192 C A COL6A3 Missense_Mutation p.R2148I 0.26 benign(0.155) TCGA-AZ-4315-01 2 238672670 238672670 G A LRRFIP1 Missense_Mutation p.D772N 0.32 deleterious(0.04) benign(0.023) TCGA-AZ-4315-01 2 238732983 238732983 G A RBM44 Silent p.E791E 0.28 TCGA-AZ-4315-01 2 239049613 239049613 G A KLHL30 Missense_Mutation p.R73H 0.32 deleterious(0.01) benign(0.126) TCGA-AZ-4315-01 2 239140537 239140537 C T AC016757.3 5'Flank 0.26 TCGA-AZ-4315-01 2 240944633 240944633 C T NDUFA10 Missense_Mutation p.R295Q 0.24 deleterious(0.02) benign(0.337) TCGA-AZ-4315-01 2 241515962 241515962 C T RNPEPL1 Silent p.F276F 0.43 TCGA-AZ-4315-01 2 242021145 242021145 C T SNED1 Missense_Mutation p.P1324S 0.32 tolerated(0.28) benign(0.023) TCGA-AZ-4315-01 2 242163197 242163197 G A ANO7 Splice_Site p.X898_splice 0.29 TCGA-AZ-4315-01 2 242187710 242187710 G T HDLBP Silent p.I522I 0.33 TCGA-AZ-4315-01 2 242438065 242438065 C A STK25 Missense_Mutation p.E302D 0.11 tolerated(0.86) benign(0.001) TCGA-AZ-4315-01 2 242441080 242441080 C T STK25 Missense_Mutation p.R25H 0.33 deleterious(0.04) benign(0.096) TCGA-AZ-4315-01 2 24253601 24253601 G A C2orf44 3'UTR 0.64 TCGA-AZ-4315-01 2 24261938 24261938 G T C2orf44 Missense_Mutation p.H143N 0.31 deleterious(0.04) possibly_damaging(0.809) TCGA-AZ-4315-01 2 24362309 24362309 A C FAM228B Missense_Mutation p.N144H 0.34 tolerated(0.07) probably_damaging(0.946) TCGA-AZ-4315-01 2 25065222 25065222 T G ADCY3 Missense_Mutation p.H286P 0.23 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 25819102 25819102 G T DTNB Missense_Mutation p.F152L 0.37 deleterious(0) probably_damaging(0.961) TCGA-AZ-4315-01 2 25967242 25967242 C A ASXL2 Missense_Mutation p.R655I 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 25982356 25982356 G A ASXL2 Nonsense_Mutation p.R312* 0.31 TCGA-AZ-4315-01 2 26204509 26204509 A G KIF3C Missense_Mutation p.V93A 0.24 benign(0.422) TCGA-AZ-4315-01 2 26350767 26350767 A C RAB10 Missense_Mutation p.N156H 0.29 deleterious(0) probably_damaging(0.985) TCGA-AZ-4315-01 2 26410490 26410490 G A GAREML Silent p.A663A 0.41 TCGA-AZ-4315-01 2 26501544 26501544 T C HADHB Missense_Mutation p.S169P 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 26696097 26696097 G A OTOF Silent p.F1212F 0.26 TCGA-AZ-4315-01 2 27015001 27015001 G A CENPA Missense_Mutation p.A35T 0.33 tolerated(0.76) unknown(0) TCGA-AZ-4315-01 2 27282366 27282366 A G AGBL5 Intron 0.41 TCGA-AZ-4315-01 2 27327568 27327568 G A CGREF1 Intron 0.23 TCGA-AZ-4315-01 2 27462231 27462231 C T CAD Silent p.S1762S 0.42 TCGA-AZ-4315-01 2 27535423 27535423 G T MPV17 Missense_Mutation p.L105I 0.33 tolerated(0.11) possibly_damaging(0.504) TCGA-AZ-4315-01 2 27549019 27549019 G T GTF3C2 3'UTR 0.27 TCGA-AZ-4315-01 2 27552097 27552097 G A GTF3C2 Nonsense_Mutation p.R644* 0.32 TCGA-AZ-4315-01 2 27667973 27667973 C A IFT172 Splice_Site p.X1690_splice 0.41 TCGA-AZ-4315-01 2 27695057 27695057 A G IFT172 Intron 0.48 TCGA-AZ-4315-01 2 27695119 27695119 G A IFT172 Missense_Mutation p.R508C 0.46 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 2 27726430 27726430 C T GCKR Missense_Mutation p.R232W 0.24 deleterious(0.04) benign(0.059) TCGA-AZ-4315-01 2 27799476 27799476 A C C2orf16 Missense_Mutation p.N13H 0.32 deleterious(0.01) benign(0.027) TCGA-AZ-4315-01 2 27803796 27803796 C T C2orf16 Nonsense_Mutation p.R1453* 0.21 TCGA-AZ-4315-01 2 27822901 27822901 A G ZNF512 Silent p.E146E 0.28 TCGA-AZ-4315-01 2 27826094 27826094 A G ZNF512 Missense_Mutation p.T286A 0.24 tolerated(0.95) benign(0.001) TCGA-AZ-4315-01 2 27900661 27900661 T G SLC4A1AP Missense_Mutation p.S545A 0.29 tolerated(0.08) benign(0.013) TCGA-AZ-4315-01 2 27931083 27931083 C T AC074091.13 5'UTR 0.23 TCGA-AZ-4315-01 2 28634930 28634930 G A FOSL2 Missense_Mutation p.R199Q 0.30 tolerated(0.65) benign(0.006) TCGA-AZ-4315-01 2 28805313 28805313 C T PLB1 Silent p.I558I 0.35 TCGA-AZ-4315-01 2 28808637 28808637 T C PLB1 Silent p.C581C 0.32 TCGA-AZ-4315-01 2 29074130 29074130 G A TRMT61B Missense_Mutation p.R374C 0.37 deleterious(0.02) benign(0.09) TCGA-AZ-4315-01 2 29152516 29152516 G A WDR43 Silent p.T459T 0.27 TCGA-AZ-4315-01 2 29249783 29249783 G A FAM179A Missense_Mutation p.G640S 0.32 deleterious(0.03) probably_damaging(0.983) TCGA-AZ-4315-01 2 29286966 29286966 G A C2orf71 3'UTR 0.27 TCGA-AZ-4315-01 2 29294502 29294502 T C C2orf71 Missense_Mutation p.T876A 0.29 tolerated(0.11) benign(0.106) TCGA-AZ-4315-01 2 29297043 29297043 G A C2orf71 Missense_Mutation p.R29W 0.30 deleterious(0) possibly_damaging(0.784) TCGA-AZ-4315-01 2 30863186 30863186 C T LCLAT1 Missense_Mutation p.R316C 0.39 deleterious(0.01) benign(0.049) TCGA-AZ-4315-01 2 31457646 31457646 C T EHD3 Silent p.A53A 0.32 TCGA-AZ-4315-01 2 32339784 32339784 A C SPAST Missense_Mutation p.K254Q 0.22 tolerated(0.19) possibly_damaging(0.548) TCGA-AZ-4315-01 2 32396374 32396374 C T SLC30A6 Nonsense_Mutation p.R8* 0.31 TCGA-AZ-4315-01 2 32640462 32640462 G A BIRC6 Silent p.P701P 0.19 TCGA-AZ-4315-01 2 32689802 32689802 G A BIRC6 Missense_Mutation p.E1723K 0.29 possibly_damaging(0.771) TCGA-AZ-4315-01 2 32695268 32695268 G T BIRC6 Missense_Mutation p.R2127I 0.28 probably_damaging(0.991) TCGA-AZ-4315-01 2 32725021 32725021 A C BIRC6 Missense_Mutation p.K2959T 0.31 probably_damaging(0.994) TCGA-AZ-4315-01 2 33045935 33045935 A G TTC27 Missense_Mutation p.D821G 0.14 tolerated(0.35) benign(0) TCGA-AZ-4315-01 2 3322718 3322718 C A TSSC1 Intron 0.44 TCGA-AZ-4315-01 2 33468851 33468851 C T LTBP1 Missense_Mutation p.P667S 0.30 tolerated(0.3) benign(0.085) TCGA-AZ-4315-01 2 33585705 33585705 G T LTBP1 Nonsense_Mutation p.E1348* 0.43 TCGA-AZ-4315-01 2 33740173 33740173 T C RASGRP3 5'UTR 0.37 TCGA-AZ-4315-01 2 33745023 33745023 C T RASGRP3 Nonsense_Mutation p.R60* 0.30 TCGA-AZ-4315-01 2 33745024 33745024 G A RASGRP3 Missense_Mutation p.R60Q 0.35 tolerated(0.85) benign(0.005) TCGA-AZ-4315-01 2 33752338 33752338 C T RASGRP3 Silent p.V314V 0.43 TCGA-AZ-4315-01 2 3691108 3691108 G A COLEC11 Missense_Mutation p.E149K 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-AZ-4315-01 2 36970262 36970262 C T VIT Silent p.C46C 0.22 TCGA-AZ-4315-01 2 36986160 36986160 C A VIT Nonsense_Mutation p.S153* 0.33 TCGA-AZ-4315-01 2 37041397 37041397 G A VIT Missense_Mutation p.A659T 0.13 tolerated(0.32) benign(0.052) TCGA-AZ-4315-01 2 37306424 37306424 T G HEATR5B Missense_Mutation p.L59F 0.35 tolerated(0.17) possibly_damaging(0.561) TCGA-AZ-4315-01 2 37406712 37406712 G A SULT6B1 Nonsense_Mutation p.R102* 0.29 TCGA-AZ-4315-01 2 37454714 37454714 G A CEBPZ Missense_Mutation p.S541L 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 37586736 37586736 G A QPCT Missense_Mutation p.R94Q 0.32 tolerated(0.24) benign(0.037) TCGA-AZ-4315-01 2 37594503 37594503 G A QPCT Silent p.S225S 0.37 TCGA-AZ-4315-01 2 37873863 37873863 G A CDC42EP3 5'UTR 0.30 TCGA-AZ-4315-01 2 38178914 38178914 A C RMDN2 Missense_Mutation p.N186H 0.28 tolerated_low_confidence(1) benign(0.001) TCGA-AZ-4315-01 2 38179250 38179250 A C RMDN2 Missense_Mutation p.S298R 0.43 tolerated(0.86) benign(0.041) TCGA-AZ-4315-01 2 38244389 38244389 G A RMDN2 Intron 0.36 TCGA-AZ-4315-01 2 38525630 38525630 G A ATL2 Missense_Mutation p.R430C 0.36 tolerated(0.09) benign(0.02) TCGA-AZ-4315-01 2 38818739 38818739 G A HNRNPLL Nonsense_Mutation p.R76* 0.10 TCGA-AZ-4315-01 2 39006172 39006172 G T GEMIN6 Missense_Mutation p.D14Y 0.33 deleterious(0.04) possibly_damaging(0.8) TCGA-AZ-4315-01 2 39212819 39212819 A C SOS1 3'UTR 0.33 TCGA-AZ-4315-01 2 39212954 39212954 T C SOS1 3'UTR 0.32 TCGA-AZ-4315-01 2 39281838 39281838 G A SOS1 Nonsense_Mutation p.R213* 0.60 TCGA-AZ-4315-01 2 42483731 42483731 C A EML4 Nonsense_Mutation p.S100* 0.39 TCGA-AZ-4315-01 2 42557005 42557005 A G EML4 Silent p.L868L 0.48 TCGA-AZ-4315-01 2 43019630 43019630 C T HAAO Missense_Mutation p.G16D 0.40 tolerated(0.4) benign(0.001) TCGA-AZ-4315-01 2 43793521 43793521 G T THADA Intron 0.32 TCGA-AZ-4315-01 2 43926793 43926793 A C PLEKHH2 Missense_Mutation p.E232D 0.13 tolerated(0.33) benign(0.002) TCGA-AZ-4315-01 2 43958731 43958731 A C PLEKHH2 Missense_Mutation p.K978T 0.38 deleterious(0) probably_damaging(0.969) TCGA-AZ-4315-01 2 44047053 44047053 C T ABCG5 Splice_Site p.X550_splice 0.40 TCGA-AZ-4315-01 2 44115643 44115643 G T LRPPRC 3'UTR 0.30 TCGA-AZ-4315-01 2 44201290 44201290 G A LRPPRC Missense_Mutation p.T385M 0.39 tolerated(0.35) benign(0.025) TCGA-AZ-4315-01 2 45511 45511 C T FAM110C Missense_Mutation p.R292H 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 45616354 45616354 C A SRBD1 3'UTR 0.36 TCGA-AZ-4315-01 2 45879498 45879498 G A PRKCE Missense_Mutation p.A87T 0.16 tolerated(0.41) benign(0.054) TCGA-AZ-4315-01 2 46808771 46808771 T G RHOQ 3'UTR 0.32 TCGA-AZ-4315-01 2 46987588 46987588 C A SOCS5 3'UTR 0.33 TCGA-AZ-4315-01 2 47238569 47238569 C T TTC7A Missense_Mutation p.R463C 0.32 deleterious(0) benign(0.003) TCGA-AZ-4315-01 2 47389793 47389793 C A CALM2 Nonsense_Mutation p.E15* 0.29 TCGA-AZ-4315-01 2 47613718 47613718 A C EPCAM Missense_Mutation p.E304A 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 47643493 47643493 A C MSH2 Missense_Mutation p.K334T 0.20 deleterious(0) possibly_damaging(0.876) TCGA-AZ-4315-01 2 47698180 47698180 G T MSH2 Nonsense_Mutation p.E580* 0.32 TCGA-AZ-4315-01 2 48027747 48027747 G T MSH6 Missense_Mutation p.M875I 0.38 tolerated(0.28) benign(0.004) TCGA-AZ-4315-01 2 48030686 48030686 G A MSH6 Silent p.T1100T 0.33 TCGA-AZ-4315-01 2 48573834 48573834 C T FOXN2 Nonsense_Mutation p.R161* 0.34 TCGA-AZ-4315-01 2 48688277 48688277 T C PPP1R21 Silent p.C200C 0.28 TCGA-AZ-4315-01 2 48809255 48809255 G T STON1-GTF2A1L Nonsense_Mutation p.E495* 0.35 TCGA-AZ-4315-01 2 48915034 48915034 G T LHCGR Missense_Mutation p.F634L 0.38 tolerated(0.13) benign(0.223) TCGA-AZ-4315-01 2 48950762 48950762 G A LHCGR Silent p.L153L 0.22 TCGA-AZ-4315-01 2 50463967 50463967 T C NRXN1 Missense_Mutation p.D1209G 0.31 tolerated(0.07) benign(0.043) TCGA-AZ-4315-01 2 53992588 53992588 T G ASB3 Missense_Mutation p.N76T 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 54482258 54482258 C T TSPYL6 Missense_Mutation p.R344Q 0.26 tolerated(0.85) benign(0.032) TCGA-AZ-4315-01 2 54482929 54482929 C T TSPYL6 Silent p.T120T 0.40 TCGA-AZ-4315-01 2 54848604 54848604 C A SPTBN1 Missense_Mutation p.F277L 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-AZ-4315-01 2 54853144 54853144 G A SPTBN1 Missense_Mutation p.A473T 0.40 deleterious(0.01) probably_damaging(0.937) TCGA-AZ-4315-01 2 54880806 54880806 G A SPTBN1 Missense_Mutation p.D1880N 0.38 tolerated(0.15) benign(0.029) TCGA-AZ-4315-01 2 55043979 55043979 G T EML6 Missense_Mutation p.R138M 0.35 deleterious(0.03) benign(0.07) TCGA-AZ-4315-01 2 55056560 55056560 G A EML6 Missense_Mutation p.D265N 0.17 tolerated(0.21) benign(0.001) TCGA-AZ-4315-01 2 55252866 55252866 G A RTN4 Missense_Mutation p.A790V 0.37 tolerated(0.23) benign(0.015) TCGA-AZ-4315-01 2 55561822 55561822 G T CCDC88A Missense_Mutation p.S712Y 0.34 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 2 56098194 56098194 G A EFEMP1 Silent p.G355G 0.31 TCGA-AZ-4315-01 2 56599513 56599513 A G CCDC85A Missense_Mutation p.N451S 0.36 tolerated_low_confidence(0.34) benign(0.001) TCGA-AZ-4315-01 2 58275980 58275980 G T VRK2 Missense_Mutation p.R5I 0.26 deleterious(0.04) possibly_damaging(0.723) TCGA-AZ-4315-01 2 5836364 5836364 G A SOX11 3'UTR 0.26 TCGA-AZ-4315-01 2 5837734 5837734 C T SOX11 3'UTR 0.36 TCGA-AZ-4315-01 2 5838432 5838432 G A SOX11 3'UTR 0.33 TCGA-AZ-4315-01 2 5840885 5840885 C T SOX11 3'UTR 0.27 TCGA-AZ-4315-01 2 60687442 60687442 A C BCL11A 3'UTR 0.44 TCGA-AZ-4315-01 2 61192223 61192223 T G PUS10 Silent p.P231P 0.34 TCGA-AZ-4315-01 2 61389654 61389654 G A C2orf74 Missense_Mutation p.S9N 0.39 tolerated(0.11) benign(0.383) TCGA-AZ-4315-01 2 61484360 61484360 G A USP34 Silent p.I1990I 0.40 TCGA-AZ-4315-01 2 61561087 61561087 G A USP34 Missense_Mutation p.R922C 0.28 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 2 61575186 61575186 C T USP34 Missense_Mutation p.E702K 0.30 tolerated_low_confidence(0.51) benign(0.004) TCGA-AZ-4315-01 2 61715367 61715367 C T XPO1 Missense_Mutation p.R749Q 0.30 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 2 62066723 62066723 A C FAM161A Missense_Mutation p.I472M 0.36 deleterious(0.01) benign(0.26) TCGA-AZ-4315-01 2 62067079 62067079 G A FAM161A Nonsense_Mutation p.R354* 0.27 TCGA-AZ-4315-01 2 62451324 62451324 C T B3GNT2 3'UTR 0.30 TCGA-AZ-4315-01 2 63667018 63667018 A G WDPCP Intron 0.26 TCGA-AZ-4315-01 2 63712102 63712102 C T WDPCP Silent p.T91T 0.33 TCGA-AZ-4315-01 2 63713719 63713719 C T WDPCP Silent p.A70A 0.34 TCGA-AZ-4315-01 2 63832472 63832472 C A MDH1 Missense_Mutation p.S263Y 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 66795850 66795850 T C MEIS1 Missense_Mutation p.V359A 0.25 tolerated(0.28) benign(0.009) TCGA-AZ-4315-01 2 66796167 66796167 T G MEIS1 Intron 0.25 TCGA-AZ-4315-01 2 67632319 67632319 T G ETAA1 Missense_Mutation p.F835L 0.45 tolerated(0.58) benign(0.027) TCGA-AZ-4315-01 2 67632349 67632349 T G ETAA1 Silent p.S845S 0.42 TCGA-AZ-4315-01 2 68415679 68415679 C T PPP3R1 Missense_Mutation p.D63N 0.47 deleterious(0.04) probably_damaging(0.977) TCGA-AZ-4315-01 2 68544350 68544350 T C CNRIP1 Missense_Mutation p.D90G 0.35 deleterious(0.03) possibly_damaging(0.766) TCGA-AZ-4315-01 2 68621248 68621248 C T PLEK Missense_Mutation p.P286S 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 68740312 68740312 G A APLF Missense_Mutation p.G148R 0.41 tolerated(0.69) benign(0.004) TCGA-AZ-4315-01 2 68962385 68962385 G A ARHGAP25 Silent p.A18A 0.34 TCGA-AZ-4315-01 2 69002474 69002474 G A ARHGAP25 Silent p.K61K 0.54 TCGA-AZ-4315-01 2 69046367 69046367 G T ARHGAP25 Missense_Mutation p.K372N 0.41 deleterious(0.01) possibly_damaging(0.826) TCGA-AZ-4315-01 2 69053375 69053375 C T ARHGAP25 3'UTR 0.35 TCGA-AZ-4315-01 2 69172530 69172530 T G GKN2 Silent p.G175G 0.30 TCGA-AZ-4315-01 2 69207131 69207131 C T GKN1 Silent p.F148F 0.29 TCGA-AZ-4315-01 2 69318012 69318012 G A ANTXR1 Missense_Mutation p.E222K 0.28 deleterious(0) probably_damaging(0.93) TCGA-AZ-4315-01 2 70066628 70066628 G A GMCL1 Missense_Mutation p.E142K 0.34 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 70143279 70143279 T C MXD1 Silent p.L34L 0.32 TCGA-AZ-4315-01 2 70527976 70527976 A G FAM136A Missense_Mutation p.F75S 0.29 deleterious(0.03) possibly_damaging(0.687) TCGA-AZ-4315-01 2 70910857 70910857 G T ADD2 Missense_Mutation p.L331I 0.39 tolerated(0.12) benign(0.139) TCGA-AZ-4315-01 2 70933562 70933562 C T ADD2 5'UTR 0.28 TCGA-AZ-4315-01 2 71058127 71058127 C T CD207 3'UTR 0.35 TCGA-AZ-4315-01 2 71206278 71206278 C T ANKRD53 Silent p.L74L 0.47 TCGA-AZ-4315-01 2 71211755 71211755 T G ANKRD53 Missense_Mutation p.I306M 0.41 tolerated(0.07) possibly_damaging(0.841) TCGA-AZ-4315-01 2 71371655 71371655 T G MPHOSPH10 Missense_Mutation p.F515C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 71376430 71376430 G T MPHOSPH10 Missense_Mutation p.K581N 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 71377037 71377037 C A MPHOSPH10 Missense_Mutation p.F646L 0.35 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 2 71730434 71730434 G T DYSF Missense_Mutation p.K110N 0.29 tolerated(0.15) benign(0.06) TCGA-AZ-4315-01 2 71742796 71742796 A G DYSF Missense_Mutation p.N268S 0.47 deleterious(0.03) possibly_damaging(0.596) TCGA-AZ-4315-01 2 71839822 71839822 G A DYSF Missense_Mutation p.D1425N 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 72692170 72692170 G A EXOC6B Intron 0.28 TCGA-AZ-4315-01 2 72719536 72719536 T G EXOC6B Missense_Mutation p.I526L 0.23 tolerated(0.6) probably_damaging(0.98) TCGA-AZ-4315-01 2 72742224 72742224 C T EXOC6B Missense_Mutation p.R316Q 0.29 tolerated(0.08) probably_damaging(0.984) TCGA-AZ-4315-01 2 72802691 72802691 T G EXOC6B Missense_Mutation p.E259A 0.37 tolerated(0.4) benign(0.006) TCGA-AZ-4315-01 2 73675412 73675412 G A ALMS1 Silent p.Q585Q 0.22 TCGA-AZ-4315-01 2 73680674 73680674 G A ALMS1 Silent p.T2339T 0.27 TCGA-AZ-4315-01 2 73717946 73717946 G A ALMS1 Missense_Mutation p.D2953N 0.33 possibly_damaging(0.792) TCGA-AZ-4315-01 2 73868670 73868670 G A NAT8 Missense_Mutation p.A29V 0.10 tolerated(0.79) benign(0.001) TCGA-AZ-4315-01 2 74002127 74002127 C T DUSP11 Silent p.L121L 0.34 TCGA-AZ-4315-01 2 74129542 74129542 G T ACTG2 Missense_Mutation p.S61I 0.42 deleterious_low_confidence(0) possibly_damaging(0.545) TCGA-AZ-4315-01 2 74185854 74185854 G T DGUOK Missense_Mutation p.K275N 0.22 tolerated(0.29) benign(0.002) TCGA-AZ-4315-01 2 74435843 74435843 G A MTHFD2 Missense_Mutation p.R186Q 0.33 tolerated(0.07) possibly_damaging(0.547) TCGA-AZ-4315-01 2 74604829 74604829 C T DCTN1 Missense_Mutation p.D102N 0.36 tolerated(0.43) benign(0.09) TCGA-AZ-4315-01 2 74642144 74642144 C T C2orf81 Missense_Mutation p.R360H 0.33 tolerated(0.11) benign(0.05) TCGA-AZ-4315-01 2 74688484 74688484 T C MOGS Missense_Mutation p.D811G 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 2 74789403 74789403 G T M1AP Missense_Mutation p.P408T 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 75108870 75108870 G T HK2 Nonsense_Mutation p.G535* 0.32 TCGA-AZ-4315-01 2 75426260 75426260 G A TACR1 5'UTR 0.24 TCGA-AZ-4315-01 2 75720614 75720614 C T EVA1A Silent p.K69K 0.28 TCGA-AZ-4315-01 2 75897329 75897329 G A GCFC2 Missense_Mutation p.R680C 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 77745930 77745930 T G LRRTM4 Missense_Mutation p.E355D 0.35 tolerated(0.27) benign(0.015) TCGA-AZ-4315-01 2 80101369 80101369 C T CTNNA2 Silent p.I251I 0.11 TCGA-AZ-4315-01 2 80529445 80529445 G A LRRTM1 Silent p.A500A 0.15 TCGA-AZ-4315-01 2 80874923 80874923 C T CTNNA2 Nonsense_Mutation p.R882* 0.32 TCGA-AZ-4315-01 2 80874951 80874951 C T CTNNA2 Missense_Mutation p.S891L 0.35 deleterious(0.03) possibly_damaging(0.537) TCGA-AZ-4315-01 2 84774731 84774731 T G DNAH6 Missense_Mutation p.F394C 0.35 tolerated(0.19) benign(0.025) TCGA-AZ-4315-01 2 84851628 84851628 C T DNAH6 Missense_Mutation p.R1413C 0.36 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 84852038 84852038 C A DNAH6 Missense_Mutation p.L1456I 0.33 deleterious(0) probably_damaging(0.919) TCGA-AZ-4315-01 2 84864378 84864378 G T DNAH6 Missense_Mutation p.M1566I 0.39 tolerated(0.19) benign(0.216) TCGA-AZ-4315-01 2 84886208 84886208 C A DNAH6 Missense_Mutation p.S2000Y 0.25 deleterious(0) probably_damaging(0.928) TCGA-AZ-4315-01 2 85549882 85549882 C A TGOLN2 Splice_Site p.X437_splice 0.33 TCGA-AZ-4315-01 2 85570880 85570880 G T RETSAT Missense_Mutation p.F525L 0.17 tolerated(0.11) benign(0.094) TCGA-AZ-4315-01 2 85863239 85863239 A C USP39 Missense_Mutation p.K338T 0.33 tolerated(0.06) possibly_damaging(0.881) TCGA-AZ-4315-01 2 86439396 86439396 A G MRPL35 3'UTR 0.40 TCGA-AZ-4315-01 2 86712067 86712067 C T KDM3A Missense_Mutation p.R1033C 0.35 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 2 86719172 86719172 T C KDM3A Missense_Mutation p.V1299A 0.33 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 2 86769398 86769398 C T RNF103-CHMP3 Missense_Mutation p.R57K 0.28 deleterious(0.01) possibly_damaging(0.53) TCGA-AZ-4315-01 2 87000831 87000831 G A RMND5A 3'UTR 0.38 TCGA-AZ-4315-01 2 88082418 88082418 C A RGPD2 Missense_Mutation p.K1375N 0.33 deleterious(0) possibly_damaging(0.8) TCGA-AZ-4315-01 2 88422693 88422693 A T FABP1 Intron 0.25 TCGA-AZ-4315-01 2 88424078 88424078 T G FABP1 Missense_Mutation p.K90Q 0.28 deleterious(0) probably_damaging(0.964) TCGA-AZ-4315-01 2 8873637 8873637 G A KIDINS220 Silent p.F1330F 0.31 TCGA-AZ-4315-01 2 89035207 89035207 G T RPIA Missense_Mutation p.K183N 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 89084255 89084255 A C ANKRD36BP2 RNA 0.38 TCGA-AZ-4315-01 2 89399359 89399359 C T IGKV1-16 Missense_Mutation p.S115N 0.29 tolerated(0.23) benign(0.007) TCGA-AZ-4315-01 2 89953175 89953175 G A IGKV1D-33 Nonsense_Mutation p.W57* 0.25 TCGA-AZ-4315-01 2 90077818 90077818 G A IGKV3D-20 Nonsense_Mutation p.W14* 0.26 TCGA-AZ-4315-01 2 90108830 90108830 C A IGKV6D-41 Missense_Mutation p.S32Y 0.32 deleterious(0.04) possibly_damaging(0.645) TCGA-AZ-4315-01 2 90122021 90122021 T C IGKV1D-17 Missense_Mutation p.V80A 0.19 deleterious(0) benign(0.361) TCGA-AZ-4315-01 2 90139422 90139422 G T IGKV1D-16 Missense_Mutation p.A65S 0.34 tolerated(0.37) benign(0.115) TCGA-AZ-4315-01 2 90154228 90154228 T G IGKV3D-15 Silent p.V105V 0.11 TCGA-AZ-4315-01 2 90193356 90193356 C A IGKV1D-13 Missense_Mutation p.L95I 0.26 deleterious(0) possibly_damaging(0.693) TCGA-AZ-4315-01 2 90260080 90260080 A G IGKV1D-8 Silent p.K61K 0.32 TCGA-AZ-4315-01 2 9463281 9463281 G A ASAP2 Missense_Mutation p.A168T 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 2 9548298 9548298 C A ITGB1BP1 Nonsense_Mutation p.E109* 0.29 TCGA-AZ-4315-01 2 95537492 95537492 C T TEKT4 Silent p.F56F 0.29 TCGA-AZ-4315-01 2 95774086 95774086 A G MRPS5 Silent p.I157I 0.25 TCGA-AZ-4315-01 2 96262124 96262124 G A TRIM43 Missense_Mutation p.E228K 0.34 tolerated(0.48) benign(0.026) TCGA-AZ-4315-01 2 96458262 96458262 C T AC008268.2 RNA 0.75 TCGA-AZ-4315-01 2 96698112 96698112 G A GPAT2 Intron 0.20 TCGA-AZ-4315-01 2 96993921 96993921 C T ITPRIPL1 Missense_Mutation p.L526F 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 2 96994058 96994058 A C ITPRIPL1 3'UTR 0.28 TCGA-AZ-4315-01 2 97026344 97026344 A G NCAPH Missense_Mutation p.K495E 0.27 deleterious(0) probably_damaging(0.911) TCGA-AZ-4315-01 2 97215075 97215075 C T ARID5A Silent p.G46G 0.35 TCGA-AZ-4315-01 2 97350128 97350128 G T FER1L5 RNA 0.47 TCGA-AZ-4315-01 2 97462749 97462749 G A CNNM4 Missense_Mutation p.G468E 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 2 97508214 97508214 C T ANKRD23 Missense_Mutation p.G21E 0.33 tolerated(0.16) benign(0.003) TCGA-AZ-4315-01 2 97509734 97509734 C T ANKRD23 5'UTR 0.44 TCGA-AZ-4315-01 2 97847476 97847476 G T ANKRD36 Missense_Mutation p.D595Y 0.25 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-AZ-4315-01 2 97854997 97854997 G T ANKRD36 Nonsense_Mutation p.E739* 0.43 TCGA-AZ-4315-01 2 97881190 97881190 C T ANKRD36 Missense_Mutation p.S1210L 0.33 tolerated(0.2) benign(0.003) TCGA-AZ-4315-01 2 98167795 98167795 C T ANKRD36B RNA 0.42 TCGA-AZ-4315-01 2 98340620 98340620 C T ZAP70 Missense_Mutation p.R41C 0.30 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 2 98341593 98341593 G A ZAP70 Silent p.P147P 0.43 TCGA-AZ-4315-01 2 98354262 98354262 G A ZAP70 Missense_Mutation p.E509K 0.13 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 2 99013312 99013312 C T CNGA3 Missense_Mutation p.S560L 0.13 deleterious(0.01) benign(0.065) TCGA-AZ-4315-01 2 99013442 99013442 G A CNGA3 Silent p.R603R 0.34 TCGA-AZ-4315-01 2 99169329 99169329 C T INPP4A Missense_Mutation p.T420I 0.11 tolerated(0.19) probably_damaging(0.978) TCGA-AZ-4315-01 2 99220598 99220598 G A COA5 Silent p.Y52Y 0.35 TCGA-AZ-4315-01 2 99237672 99237672 C A MGAT4A 3'UTR 0.32 TCGA-AZ-4315-01 2 99614413 99614413 G A TSGA10 3'UTR 0.30 TCGA-AZ-4315-01 2 99804707 99804707 G T MRPL30 Missense_Mutation p.R40I 0.32 deleterious(0) probably_damaging(0.928) TCGA-AZ-4315-01 2 99861812 99861812 G A LYG2 Silent p.I98I 0.35 TCGA-AZ-4315-01 2 99900715 99900715 C A LYG1 3'Flank 0.40 TCGA-AZ-4315-01 3 100084425 100084425 T C TOMM70A Missense_Mutation p.K604E 0.34 tolerated(0.27) benign(0.153) TCGA-AZ-4315-01 3 100174643 100174643 G T LNP1 Missense_Mutation p.R137I 0.36 deleterious(0) possibly_damaging(0.603) TCGA-AZ-4315-01 3 10018688 10018688 A T EMC3 Missense_Mutation p.F87Y 0.20 tolerated(0.8) benign(0.006) TCGA-AZ-4315-01 3 100413870 100413870 C A GPR128 3'UTR 0.29 TCGA-AZ-4315-01 3 100432597 100432597 G A TFG Missense_Mutation p.R23Q 0.43 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 3 100471644 100471644 G A ABI3BP Silent p.S992S 0.32 TCGA-AZ-4315-01 3 100581182 100581182 C T ABI3BP Missense_Mutation p.D378N 0.24 tolerated(0.07) possibly_damaging(0.539) TCGA-AZ-4315-01 3 100949816 100949816 C A IMPG2 Missense_Mutation p.R1136I 0.28 tolerated(0.13) benign(0.027) TCGA-AZ-4315-01 3 100992556 100992556 C A IMPG2 Nonsense_Mutation p.E233* 0.40 TCGA-AZ-4315-01 3 101056434 101056434 C T SENP7 Missense_Mutation p.R800Q 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 101062707 101062707 A G SENP7 Silent p.S643S 0.33 TCGA-AZ-4315-01 3 101311826 101311826 T C PCNP 3'UTR 0.41 TCGA-AZ-4315-01 3 101389824 101389824 C T ZBTB11 Intron 0.45 TCGA-AZ-4315-01 3 101399983 101399983 C T RPL24 Missense_Mutation p.R157H 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 3 10401577 10401577 G A ATP2B2 Silent p.I630I 0.35 TCGA-AZ-4315-01 3 107429447 107429447 A G BBX Missense_Mutation p.D47G 0.33 deleterious(0) benign(0.126) TCGA-AZ-4315-01 3 107519974 107519974 C T BBX Missense_Mutation p.L862F 0.34 tolerated(0.12) probably_damaging(0.998) TCGA-AZ-4315-01 3 107524288 107524288 C T BBX Missense_Mutation p.S937F 0.46 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 3 107932849 107932849 C A IFT57 Nonsense_Mutation p.E172* 0.30 TCGA-AZ-4315-01 3 107938388 107938388 C T IFT57 Missense_Mutation p.E82K 0.34 deleterious(0.03) probably_damaging(0.969) TCGA-AZ-4315-01 3 108100296 108100296 G C MYH15 3'UTR 0.33 TCGA-AZ-4315-01 3 108117641 108117641 A G MYH15 Missense_Mutation p.L1679P 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 108158634 108158634 G A MYH15 Missense_Mutation p.L1029F 0.31 deleterious(0.01) benign(0.015) TCGA-AZ-4315-01 3 108214691 108214691 G A MYH15 Missense_Mutation p.A236V 0.25 tolerated(0.16) benign(0.006) TCGA-AZ-4315-01 3 108406841 108406841 C A DZIP3 Missense_Mutation p.F1056L 0.35 tolerated(0.15) benign(0.003) TCGA-AZ-4315-01 3 108474560 108474560 C A RETNLB 3'UTR 0.36 TCGA-AZ-4315-01 3 108474609 108474609 C A RETNLB 3'UTR 0.39 TCGA-AZ-4315-01 3 108776313 108776313 G A MORC1 Missense_Mutation p.T351M 0.30 deleterious(0.03) possibly_damaging(0.882) TCGA-AZ-4315-01 3 109052744 109052744 C T DPPA4 Missense_Mutation p.E51K 0.20 tolerated(0.29) benign(0.014) TCGA-AZ-4315-01 3 109128916 109128916 G A RP11-702L6.4 RNA 0.25 TCGA-AZ-4315-01 3 109213058 109213058 G A RP11-702L6.4 RNA 0.29 TCGA-AZ-4315-01 3 11072877 11072877 C T SLC6A1 Silent p.V446V 0.40 TCGA-AZ-4315-01 3 11076341 11076341 A G SLC6A1 Missense_Mutation p.Y551C 0.25 deleterious(0.05) probably_damaging(0.996) TCGA-AZ-4315-01 3 111368553 111368553 G T CD96 Missense_Mutation p.R553I 0.41 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 3 111603806 111603806 C A PHLDB2 Missense_Mutation p.S294R 0.29 deleterious(0.04) benign(0.393) TCGA-AZ-4315-01 3 111603910 111603910 T G PHLDB2 Missense_Mutation p.L329R 0.26 deleterious(0.02) benign(0.282) TCGA-AZ-4315-01 3 111760832 111760832 C T TMPRSS7 Missense_Mutation p.L10F 0.40 deleterious(0.01) possibly_damaging(0.543) TCGA-AZ-4315-01 3 111766737 111766737 C T TMPRSS7 Silent p.I168I 0.23 TCGA-AZ-4315-01 3 111927084 111927084 C T SLC9C1 Missense_Mutation p.E643K 0.29 deleterious(0.03) probably_damaging(0.913) TCGA-AZ-4315-01 3 111997665 111997665 C A SLC9C1 Missense_Mutation p.D77Y 0.17 tolerated(0.09) benign(0.423) TCGA-AZ-4315-01 3 111999598 111999598 T G SLC9C1 Missense_Mutation p.I41L 0.37 tolerated(0.09) possibly_damaging(0.669) TCGA-AZ-4315-01 3 112649983 112649983 T G CD200R1 Missense_Mutation p.T58P 0.44 deleterious(0.03) probably_damaging(0.974) TCGA-AZ-4315-01 3 112724376 112724376 C T C3orf17 3'UTR 0.29 TCGA-AZ-4315-01 3 113081731 113081731 C A WDR52 Intron 0.47 TCGA-AZ-4315-01 3 113098228 113098228 T G WDR52 Missense_Mutation p.E741D 0.32 tolerated(0.19) benign(0.085) TCGA-AZ-4315-01 3 113128035 113128035 C T WDR52 Missense_Mutation p.A270T 0.30 deleterious(0) possibly_damaging(0.827) TCGA-AZ-4315-01 3 113145069 113145069 C A WDR52 Missense_Mutation p.K103N 0.37 tolerated(0.08) probably_damaging(0.978) TCGA-AZ-4315-01 3 113187111 113187111 C A SPICE1 Nonsense_Mutation p.E344* 0.31 TCGA-AZ-4315-01 3 113374024 113374024 A C KIAA2018 Missense_Mutation p.F2169V 0.26 probably_damaging(0.997) TCGA-AZ-4315-01 3 113658832 113658832 G T GRAMD1C Missense_Mutation p.E597D 0.31 tolerated(0.18) benign(0.018) TCGA-AZ-4315-01 3 113723446 113723446 G T KIAA1407 Intron 0.23 TCGA-AZ-4315-01 3 113784084 113784084 G A QTRTD1 Missense_Mutation p.D6N 0.28 tolerated_low_confidence(0.51) benign(0) TCGA-AZ-4315-01 3 113850076 113850076 G A DRD3 Nonsense_Mutation p.R299* 0.41 TCGA-AZ-4315-01 3 115805278 115805278 T C LSAMP Missense_Mutation p.Y94C 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 118824045 118824045 C A IGSF11 5'UTR 0.39 TCGA-AZ-4315-01 3 118906709 118906709 G A UPK1B Missense_Mutation p.D53N 0.07 tolerated(0.13) benign(0.243) TCGA-AZ-4315-01 3 118931368 118931368 C T B4GALT4 3'UTR 0.16 TCGA-AZ-4315-01 3 1189667 1189667 G T CNTN6 5'UTR 0.22 TCGA-AZ-4315-01 3 119112315 119112315 C T ARHGAP31 Nonsense_Mutation p.R295* 0.33 TCGA-AZ-4315-01 3 119133727 119133727 C T ARHGAP31 Missense_Mutation p.S984F 0.28 tolerated(0.74) benign(0.007) TCGA-AZ-4315-01 3 119188685 119188685 T G POGLUT1 Missense_Mutation p.F35C 0.22 deleterious(0.01) possibly_damaging(0.682) TCGA-AZ-4315-01 3 119209402 119209402 C T POGLUT1 Silent p.L268L 0.12 TCGA-AZ-4315-01 3 119325690 119325690 A C PLA1A Missense_Mutation p.D48A 0.49 tolerated(0.23) benign(0.027) TCGA-AZ-4315-01 3 119327777 119327777 T G PLA1A Missense_Mutation p.F146V 0.24 deleterious(0.01) possibly_damaging(0.792) TCGA-AZ-4315-01 3 119427503 119427503 G A MAATS1 Missense_Mutation p.R142H 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-AZ-4315-01 3 119720928 119720928 C T GSK3B Missense_Mutation p.A83T 0.32 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 3 119900120 119900120 A G GPR156 Missense_Mutation p.V262A 0.30 tolerated(0.07) probably_damaging(0.996) TCGA-AZ-4315-01 3 120053799 120053799 G A LRRC58 Nonsense_Mutation p.R273* 0.36 TCGA-AZ-4315-01 3 120114742 120114742 C T FSTL1 3'UTR 0.40 TCGA-AZ-4315-01 3 120320110 120320110 T C NDUFB4 Intron 0.14 TCGA-AZ-4315-01 3 120941851 120941851 G A STXBP5L Missense_Mutation p.E320K 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 3 121353133 121353133 C T HCLS1 Missense_Mutation p.S275N 0.40 tolerated(0.55) benign(0.213) TCGA-AZ-4315-01 3 121413791 121413791 T C GOLGB1 Missense_Mutation p.E1860G 0.36 benign(0.03) TCGA-AZ-4315-01 3 121416231 121416231 C A GOLGB1 Nonsense_Mutation p.E1047* 0.32 TCGA-AZ-4315-01 3 121518099 121518099 A G IQCB1 Missense_Mutation p.M237T 0.33 deleterious(0.01) benign(0.075) TCGA-AZ-4315-01 3 121575996 121575996 C T EAF2 Silent p.I159I 0.26 TCGA-AZ-4315-01 3 121822659 121822659 G A CD86 Missense_Mutation p.R122H 0.32 tolerated(0.48) benign(0.021) TCGA-AZ-4315-01 3 121838326 121838326 G A CD86 Missense_Mutation p.R312H 0.32 tolerated(0.42) benign(0) TCGA-AZ-4315-01 3 121973099 121973099 G A CASR Silent p.G21G 0.27 TCGA-AZ-4315-01 3 121976180 121976180 C T CASR Silent p.G146G 0.32 TCGA-AZ-4315-01 3 121976228 121976228 T G CASR Missense_Mutation p.I162M 0.33 deleterious(0.04) possibly_damaging(0.519) TCGA-AZ-4315-01 3 122324810 122324810 G T PARP15 Missense_Mutation p.D72Y 0.30 deleterious(0) benign(0.121) TCGA-AZ-4315-01 3 122345814 122345814 G A PARP15 Missense_Mutation p.D458N 0.36 tolerated(0.2) benign(0.049) TCGA-AZ-4315-01 3 122420267 122420267 G A PARP14 Missense_Mutation p.E956K 0.32 tolerated(0.17) benign(0.033) TCGA-AZ-4315-01 3 122437687 122437687 G T PARP14 Missense_Mutation p.K1563N 0.32 tolerated(0.12) benign(0.097) TCGA-AZ-4315-01 3 122446742 122446742 G T PARP14 Missense_Mutation p.M1675I 0.10 tolerated(0.34) benign(0) TCGA-AZ-4315-01 3 122447613 122447613 G T PARP14 3'UTR 0.58 TCGA-AZ-4315-01 3 122642526 122642526 G A SEMA5B Missense_Mutation p.R458C 0.30 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 3 122928186 122928186 C T SEC22A Missense_Mutation p.S41L 0.25 deleterious(0) benign(0.271) TCGA-AZ-4315-01 3 122964829 122964829 C T SEC22A Nonsense_Mutation p.R209* 0.39 TCGA-AZ-4315-01 3 123219475 123219475 G A PTPLB Missense_Mutation p.A190V 0.37 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 3 123348433 123348433 C T MYLK Missense_Mutation p.E1668K 0.38 deleterious(0) benign(0.146) TCGA-AZ-4315-01 3 123441095 123441095 C T MYLK Missense_Mutation p.E562K 0.32 deleterious(0.04) benign(0.164) TCGA-AZ-4315-01 3 123649959 123649959 C A CCDC14 Nonsense_Mutation p.E597* 0.36 TCGA-AZ-4315-01 3 123688069 123688069 C A ROPN1 Splice_Site p.X191_splice 0.25 TCGA-AZ-4315-01 3 123987812 123987812 C T KALRN Missense_Mutation p.R225W 0.32 deleterious(0.01) probably_damaging(0.931) TCGA-AZ-4315-01 3 124103814 124103814 C T KALRN Silent p.F629F 0.23 TCGA-AZ-4315-01 3 124635299 124635299 G A MUC13 Missense_Mutation p.R276C 0.33 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 3 124826371 124826371 C T SLC12A8 Silent p.E553E 0.39 TCGA-AZ-4315-01 3 124952765 124952765 G A ZNF148 Missense_Mutation p.R269C 0.35 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 3 125006969 125006969 C T ZNF148 Missense_Mutation p.R146Q 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-AZ-4315-01 3 125179696 125179696 G A SNX4 Missense_Mutation p.S288F 0.38 deleterious(0.01) benign(0.163) TCGA-AZ-4315-01 3 125702096 125702096 G T ROPN1B Splice_Site p.X191_splice 0.35 TCGA-AZ-4315-01 3 125822625 125822625 G T ALDH1L1 3'UTR 0.40 TCGA-AZ-4315-01 3 126707813 126707813 G A PLXNA1 Missense_Mutation p.R126H 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 127334776 127334776 C T MCM2 Silent p.F500F 0.28 TCGA-AZ-4315-01 3 127786399 127786399 T C SEC61A1 Missense_Mutation p.S371P 0.35 deleterious(0.03) benign(0.076) TCGA-AZ-4315-01 3 128060156 128060156 C T EEFSEC Silent p.C289C 0.35 TCGA-AZ-4315-01 3 128060548 128060548 T G EEFSEC Missense_Mutation p.V420G 0.30 deleterious(0) possibly_damaging(0.846) TCGA-AZ-4315-01 3 128182018 128182018 C T DNAJB8 Missense_Mutation p.R24H 0.38 tolerated(0.26) benign(0.096) TCGA-AZ-4315-01 3 128580461 128580461 G A RP11-723O4.9 5'Flank 0.35 TCGA-AZ-4315-01 3 128625014 128625014 C T ACAD9 Silent p.I400I 0.32 TCGA-AZ-4315-01 3 128720615 128720615 C T EFCC1 Silent p.I48I 0.31 TCGA-AZ-4315-01 3 128984487 128984487 C T COPG1 Silent p.C440C 0.34 TCGA-AZ-4315-01 3 129009551 129009551 C T HMCES Silent p.V119V 0.33 TCGA-AZ-4315-01 3 129116059 129116059 C T EFCAB12 3'Flank 0.33 TCGA-AZ-4315-01 3 129196861 129196861 C T IFT122 Missense_Mutation p.R435W 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 3 129547335 129547335 G A TMCC1 5'UTR 0.45 TCGA-AZ-4315-01 3 130103664 130103664 G T COL6A5 Nonsense_Mutation p.E440* 0.33 TCGA-AZ-4315-01 3 130103968 130103968 G A COL6A5 Missense_Mutation p.S541N 0.40 tolerated(0.79) benign(0.001) TCGA-AZ-4315-01 3 130107812 130107812 C A COL6A5 Missense_Mutation p.L751I 0.25 deleterious(0.04) possibly_damaging(0.841) TCGA-AZ-4315-01 3 130114262 130114263 - A COL6A5 Frame_Shift_Ins p.R1177Kfs*5 0.24 TCGA-AZ-4315-01 3 130128894 130128894 C T COL6A5 Silent p.G1528G 0.34 TCGA-AZ-4315-01 3 130137719 130137719 C T COL6A5 Missense_Mutation p.P1632S 0.29 tolerated(0.14) benign(0.033) TCGA-AZ-4315-01 3 130140033 130140033 C T COL6A5 Nonsense_Mutation p.R1663* 0.27 TCGA-AZ-4315-01 3 130188117 130188117 A C COL6A5 Missense_Mutation p.K2423N 0.31 deleterious(0.01) possibly_damaging(0.71) TCGA-AZ-4315-01 3 130285922 130285922 C A COL6A6 Silent p.I553I 0.38 TCGA-AZ-4315-01 3 130287019 130287019 C T COL6A6 Missense_Mutation p.R658W 0.35 deleterious(0.04) benign(0.06) TCGA-AZ-4315-01 3 130287308 130287308 C A COL6A6 Missense_Mutation p.S754Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 3 130311928 130311928 T C COL6A6 Silent p.I1465I 0.28 TCGA-AZ-4315-01 3 130394174 130394174 T G COL6A6 Missense_Mutation p.M2242R 0.34 tolerated_low_confidence(0.14) benign(0) TCGA-AZ-4315-01 3 130656309 130656309 T C ATP2C1 Splice_Site p.X154_splice 0.26 TCGA-AZ-4315-01 3 131208877 131208877 C T MRPL3 Silent p.P172P 0.31 TCGA-AZ-4315-01 3 131404786 131404786 G T CPNE4 Missense_Mutation p.S175Y 0.32 deleterious(0) possibly_damaging(0.745) TCGA-AZ-4315-01 3 132176147 132176147 G A DNAJC13 Missense_Mutation p.A462T 0.32 tolerated(0.06) possibly_damaging(0.542) TCGA-AZ-4315-01 3 132176157 132176157 G T DNAJC13 Missense_Mutation p.R465I 0.32 tolerated(0.06) benign(0.064) TCGA-AZ-4315-01 3 132201122 132201122 G T DNAJC13 Missense_Mutation p.W976L 0.38 deleterious(0) probably_damaging(0.959) TCGA-AZ-4315-01 3 132247167 132247167 T C DNAJC13 Silent p.Y2172Y 0.33 TCGA-AZ-4315-01 3 132277672 132277672 A C ACAD11 3'UTR 0.29 TCGA-AZ-4315-01 3 132349345 132349345 G T ACAD11 Missense_Mutation p.S300Y 0.40 tolerated(1) benign(0.01) TCGA-AZ-4315-01 3 132384687 132384687 G A UBA5 Missense_Mutation p.R61Q 0.24 deleterious(0.01) benign(0.023) TCGA-AZ-4315-01 3 132415580 132415580 G A NPHP3 Silent p.I722I 0.22 TCGA-AZ-4315-01 3 133467396 133467396 G T TF Missense_Mutation p.A62S 0.33 tolerated(0.43) benign(0.003) TCGA-AZ-4315-01 3 133473407 133473407 C T TF Nonsense_Mutation p.R132* 0.38 TCGA-AZ-4315-01 3 133478155 133478155 C A TF Missense_Mutation p.D395E 0.27 tolerated(0.24) benign(0.16) TCGA-AZ-4315-01 3 133525529 133525529 A C SRPRB Missense_Mutation p.K77N 0.26 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 3 133553479 133553479 G A RAB6B Nonsense_Mutation p.R168* 0.44 TCGA-AZ-4315-01 3 133666281 133666281 T C SLCO2A1 Missense_Mutation p.N372D 0.24 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 3 13381418 13381418 C T NUP210 Missense_Mutation p.G1136D 0.27 deleterious(0) possibly_damaging(0.673) TCGA-AZ-4315-01 3 13418963 13418963 A G NUP210 Missense_Mutation p.V382A 0.42 tolerated(0.08) benign(0.002) TCGA-AZ-4315-01 3 134269008 134269008 T C CEP63 Missense_Mutation p.I429T 0.32 deleterious(0.04) possibly_damaging(0.662) TCGA-AZ-4315-01 3 134670793 134670793 C A EPHB1 Missense_Mutation p.P235H 0.28 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 3 134851812 134851812 C A EPHB1 Silent p.I406I 0.34 TCGA-AZ-4315-01 3 135721936 135721936 G A PPP2R3A Silent p.A532A 0.29 TCGA-AZ-4315-01 3 135864076 135864076 C T PPP2R3A 3'UTR 0.29 TCGA-AZ-4315-01 3 135870698 135870698 C T MSL2 Missense_Mutation p.R342Q 0.36 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 3 135870850 135870850 C T MSL2 Silent p.Q291Q 0.16 TCGA-AZ-4315-01 3 136060316 136060316 T C STAG1 Missense_Mutation p.Y1175C 0.40 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-AZ-4315-01 3 136141287 136141287 G A STAG1 Nonsense_Mutation p.R668* 0.40 TCGA-AZ-4315-01 3 136162182 136162182 T C STAG1 Missense_Mutation p.D498G 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 136240208 136240208 G A STAG1 Missense_Mutation p.R175C 0.30 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 3 136574678 136574678 T G SLC35G2 3'UTR 0.38 TCGA-AZ-4315-01 3 13672874 13672874 G A FBLN2 Missense_Mutation p.R1044H 0.20 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 3 137484157 137484157 C T SOX14 Silent p.F177F 0.54 TCGA-AZ-4315-01 3 138216903 138216903 C T CEP70 Missense_Mutation p.A568T 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 3 13860791 13860791 C T WNT7A Missense_Mutation p.E234K 0.36 tolerated(0.87) benign(0.005) TCGA-AZ-4315-01 3 140401913 140401913 C T TRIM42 Silent p.F317F 0.30 TCGA-AZ-4315-01 3 141163160 141163160 T G ZBTB38 Missense_Mutation p.S644A 0.16 tolerated(0.76) benign(0.001) TCGA-AZ-4315-01 3 141305491 141305491 G T RASA2 Missense_Mutation p.E610D 0.33 tolerated(0.25) possibly_damaging(0.905) TCGA-AZ-4315-01 3 141644455 141644455 A C ATP1B3 Missense_Mutation p.K251T 0.42 deleterious(0) possibly_damaging(0.904) TCGA-AZ-4315-01 3 14174406 14174406 C T TMEM43 Silent p.F161F 0.38 TCGA-AZ-4315-01 3 14200387 14200387 C A XPC Missense_Mutation p.K332N 0.39 deleterious(0.01) benign(0.046) TCGA-AZ-4315-01 3 14208706 14208706 T G XPC Missense_Mutation p.K195T 0.37 deleterious(0) possibly_damaging(0.78) TCGA-AZ-4315-01 3 142122802 142122802 C T XRN1 Missense_Mutation p.R638H 0.42 tolerated(0.64) benign(0.001) TCGA-AZ-4315-01 3 142168253 142168253 C A ATR 3'UTR 0.30 TCGA-AZ-4315-01 3 142509970 142509970 C A TRPC1 Silent p.T469T 0.40 TCGA-AZ-4315-01 3 142681728 142681728 C T PAQR9 Missense_Mutation p.A151T 0.33 tolerated(0.07) probably_damaging(0.977) TCGA-AZ-4315-01 3 142751779 142751779 T A U2SURP Silent p.L588L 0.25 TCGA-AZ-4315-01 3 142772569 142772569 G T U2SURP Nonsense_Mutation p.E903* 0.34 TCGA-AZ-4315-01 3 143513860 143513860 G T SLC9A9 Silent p.I172I 0.33 TCGA-AZ-4315-01 3 145788334 145788334 A C PLOD2 3'UTR 0.28 TCGA-AZ-4315-01 3 146323073 146323073 G T PLSCR5 5'UTR 0.38 TCGA-AZ-4315-01 3 147113650 147113650 C T ZIC4 Missense_Mutation p.R276Q 0.32 deleterious(0.02) possibly_damaging(0.81) TCGA-AZ-4315-01 3 147131357 147131357 G A ZIC1 3'UTR 0.46 TCGA-AZ-4315-01 3 14731512 14731512 G A C3orf20 Missense_Mutation p.A212T 0.29 tolerated(0.71) benign(0.002) TCGA-AZ-4315-01 3 14799032 14799032 C T C3orf20 Missense_Mutation p.R699C 0.50 deleterious(0.02) benign(0.139) TCGA-AZ-4315-01 3 148460614 148460614 G A AGTR1 3'UTR 0.33 TCGA-AZ-4315-01 3 148744902 148744902 C A GYG1 3'UTR 0.39 TCGA-AZ-4315-01 3 148759428 148759428 T G HLTF Missense_Mutation p.K742T 0.38 deleterious(0.02) benign(0.06) TCGA-AZ-4315-01 3 148778603 148778603 C A HLTF Missense_Mutation p.E401D 0.32 tolerated(0.22) benign(0.11) TCGA-AZ-4315-01 3 148889989 148889989 C T HPS3 Nonsense_Mutation p.R999* 0.33 TCGA-AZ-4315-01 3 148927028 148927028 C T CP Missense_Mutation p.E251K 0.33 tolerated(0.08) benign(0.003) TCGA-AZ-4315-01 3 149093390 149093390 A G TM4SF1 Intron 0.28 TCGA-AZ-4315-01 3 149498135 149498135 T C ANKUB1 Silent p.T114T 0.33 TCGA-AZ-4315-01 3 150285510 150285510 A C EIF2A Missense_Mutation p.K169T 0.33 deleterious(0) benign(0.303) TCGA-AZ-4315-01 3 150299466 150299466 G A EIF2A Missense_Mutation p.R520Q 0.31 tolerated(0.61) benign(0) TCGA-AZ-4315-01 3 150460152 150460152 G A SIAH2 Missense_Mutation p.L251F 0.27 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 3 150690499 150690499 G A CLRN1 5'Flank 0.34 TCGA-AZ-4315-01 3 15079632 15079632 C A NR2C2 Missense_Mutation p.L519I 0.33 deleterious(0.03) possibly_damaging(0.457) TCGA-AZ-4315-01 3 150931507 150931507 G T P2RY14 Missense_Mutation p.L200I 0.27 tolerated(0.81) possibly_damaging(0.559) TCGA-AZ-4315-01 3 151046064 151046064 G A P2RY13 Silent p.V260V 0.33 TCGA-AZ-4315-01 3 151056107 151056107 G T P2RY12 Missense_Mutation p.S176Y 0.11 deleterious(0.03) benign(0.038) TCGA-AZ-4315-01 3 151067870 151067870 T C MED12L Silent p.C723C 0.36 TCGA-AZ-4315-01 3 151086015 151086015 G A MED12L Missense_Mutation p.A1141T 0.28 tolerated(0.48) benign(0.033) TCGA-AZ-4315-01 3 151107834 151107834 A G MED12L Missense_Mutation p.H1805R 0.42 deleterious(0.03) benign(0.129) TCGA-AZ-4315-01 3 151130966 151130966 C T MED12L Silent p.G2025G 0.27 TCGA-AZ-4315-01 3 151165205 151165205 T C IGSF10 Missense_Mutation p.E855G 0.28 tolerated(0.06) benign(0.007) TCGA-AZ-4315-01 3 151165844 151165844 T C IGSF10 Missense_Mutation p.Y642C 0.23 deleterious(0.01) possibly_damaging(0.907) TCGA-AZ-4315-01 3 151165903 151165903 C A IGSF10 Missense_Mutation p.K622N 0.28 deleterious(0) probably_damaging(0.971) TCGA-AZ-4315-01 3 152884942 152884942 A C RAP2B 3'UTR 0.36 TCGA-AZ-4315-01 3 15298172 15298172 T C SH3BP5 Intron 0.43 TCGA-AZ-4315-01 3 153202469 153202469 C A C3orf79 Missense_Mutation p.L42I 0.32 tolerated_low_confidence(0.18) benign(0.01) TCGA-AZ-4315-01 3 153870622 153870622 G A ARHGEF26 Missense_Mutation p.R463Q 0.32 tolerated(0.08) benign(0.055) TCGA-AZ-4315-01 3 154001024 154001024 C T DHX36 Missense_Mutation p.E777K 0.24 tolerated(0.18) benign(0.372) TCGA-AZ-4315-01 3 154013085 154013085 A G DHX36 Silent p.V531V 0.34 TCGA-AZ-4315-01 3 154032852 154032852 G A DHX36 Missense_Mutation p.R196W 0.29 deleterious(0.01) possibly_damaging(0.462) TCGA-AZ-4315-01 3 154146826 154146826 G A GPR149 Silent p.F193F 0.25 TCGA-AZ-4315-01 3 154147154 154147154 G A GPR149 Missense_Mutation p.S84L 0.32 deleterious(0) possibly_damaging(0.819) TCGA-AZ-4315-01 3 154802024 154802024 G A MME Missense_Mutation p.R23Q 0.39 tolerated(0.1) possibly_damaging(0.572) TCGA-AZ-4315-01 3 154834519 154834519 T A MME Missense_Mutation p.V169E 0.34 deleterious(0) possibly_damaging(0.898) TCGA-AZ-4315-01 3 154898318 154898318 G A MME 3'UTR 0.20 TCGA-AZ-4315-01 3 154898438 154898438 C A MME 3'UTR 0.31 TCGA-AZ-4315-01 3 155200026 155200026 C T PLCH1 Silent p.T1271T 0.32 TCGA-AZ-4315-01 3 155200669 155200669 C T PLCH1 Missense_Mutation p.G1057D 0.42 tolerated_low_confidence(0.15) benign(0.003) TCGA-AZ-4315-01 3 155206530 155206530 G A PLCH1 Missense_Mutation p.R808W 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 155218540 155218540 T G PLCH1 Missense_Mutation p.E571A 0.27 deleterious(0.05) benign(0.22) TCGA-AZ-4315-01 3 155282900 155282900 C T PLCH1 Silent p.T279T 0.25 TCGA-AZ-4315-01 3 155493558 155493558 C T C3orf33 Missense_Mutation p.R42Q 0.35 tolerated(0.33) benign(0.008) TCGA-AZ-4315-01 3 155571174 155571174 A G SLC33A1 Silent p.L205L 0.32 TCGA-AZ-4315-01 3 155571636 155571636 C T SLC33A1 Missense_Mutation p.A51T 0.26 tolerated(0.58) benign(0.017) TCGA-AZ-4315-01 3 155628663 155628663 T C GMPS Missense_Mutation p.S237P 0.38 tolerated(0.06) probably_damaging(0.928) TCGA-AZ-4315-01 3 155652794 155652794 G A GMPS Missense_Mutation p.R589H 0.36 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 3 156877216 156877216 G T CCNL1 Missense_Mutation p.S119Y 0.37 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 3 156979031 156979031 G T VEPH1 Silent p.V798V 0.32 TCGA-AZ-4315-01 3 157177882 157177882 C A VEPH1 Intron 0.31 TCGA-AZ-4315-01 3 15726829 15726829 G T ANKRD28 Missense_Mutation p.L735I 0.29 deleterious(0.02) probably_damaging(0.969) TCGA-AZ-4315-01 3 15726889 15726889 G A ANKRD28 Missense_Mutation p.R715W 0.38 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 3 158261228 158261228 C A RSRC1 Silent p.I288I 0.27 TCGA-AZ-4315-01 3 158537507 158537507 G T MFSD1 Missense_Mutation p.R290I 0.31 deleterious(0.02) benign(0.205) TCGA-AZ-4315-01 3 159482463 159482463 G A IQCJ-SCHIP1 Missense_Mutation p.E175K 0.42 tolerated_low_confidence(0.14) probably_damaging(0.969) TCGA-AZ-4315-01 3 159605586 159605586 G T IQCJ-SCHIP1 Missense_Mutation p.K438N 0.28 deleterious(0.04) probably_damaging(0.948) TCGA-AZ-4315-01 3 160102261 160102261 C A IFT80 Intron 0.41 TCGA-AZ-4315-01 3 160142749 160142749 T C SMC4 Missense_Mutation p.L807S 0.32 deleterious(0) possibly_damaging(0.588) TCGA-AZ-4315-01 3 160151484 160151484 C T SMC4 Nonsense_Mutation p.R1252* 0.33 TCGA-AZ-4315-01 3 160283023 160283023 C A KPNA4 Missense_Mutation p.K16N 0.42 deleterious(0) probably_damaging(0.981) TCGA-AZ-4315-01 3 160474096 160474096 A C PPM1L 5'UTR 0.22 TCGA-AZ-4315-01 3 160786653 160786653 C A PPM1L Missense_Mutation p.S264Y 0.21 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 160803676 160803676 A C B3GALNT1 Silent p.L289L 0.26 TCGA-AZ-4315-01 3 161221492 161221492 G A OTOL1 Missense_Mutation p.R399Q 0.49 tolerated(0.13) probably_damaging(0.994) TCGA-AZ-4315-01 3 16419498 16419498 C T RFTN1 Missense_Mutation p.E185K 0.33 tolerated(0.92) benign(0.039) TCGA-AZ-4315-01 3 164741402 164741402 G A SI Missense_Mutation p.R1019C 0.31 deleterious(0) possibly_damaging(0.887) TCGA-AZ-4315-01 3 164750307 164750307 T G SI Intron 0.10 TCGA-AZ-4315-01 3 164783113 164783113 C A SI Missense_Mutation p.R248I 0.34 deleterious(0.02) benign(0.106) TCGA-AZ-4315-01 3 164906730 164906730 G T SLITRK3 Missense_Mutation p.S630Y 0.43 deleterious(0.02) benign(0.054) TCGA-AZ-4315-01 3 16535290 16535290 T G RFTN1 Missense_Mutation p.E29D 0.30 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 3 165491140 165491140 A C BCHE 3'UTR 0.37 TCGA-AZ-4315-01 3 166958694 166958694 C A ZBBX Missense_Mutation p.D803Y 0.29 deleterious(0.04) possibly_damaging(0.592) TCGA-AZ-4315-01 3 167000037 167000037 C A ZBBX Missense_Mutation p.R748I 0.28 deleterious(0.05) benign(0.047) TCGA-AZ-4315-01 3 167078484 167078484 A T ZBBX Missense_Mutation p.L101M 0.32 deleterious(0.01) probably_damaging(0.958) TCGA-AZ-4315-01 3 167159941 167159941 G A SERPINI2 Missense_Mutation p.P392S 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 167196711 167196711 T G WDR49 Missense_Mutation p.Q683H 0.22 tolerated(0.13) probably_damaging(0.959) TCGA-AZ-4315-01 3 167218008 167218008 C A WDR49 Missense_Mutation p.E636D 0.37 tolerated(0.27) benign(0.015) TCGA-AZ-4315-01 3 167240229 167240229 C A WDR49 Missense_Mutation p.R531I 0.43 tolerated(0.07) benign(0.01) TCGA-AZ-4315-01 3 167322130 167322130 C T WDR49 Missense_Mutation p.G21D 0.43 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 167322177 167322177 C A WDR49 Missense_Mutation p.E5D 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-4315-01 3 168802527 168802527 C A MECOM 3'UTR 0.36 TCGA-AZ-4315-01 3 169492266 169492266 C A MYNN Silent p.V61V 0.18 TCGA-AZ-4315-01 3 169502473 169502473 A C MYNN Missense_Mutation p.K516T 0.30 tolerated(0.07) benign(0.147) TCGA-AZ-4315-01 3 169525424 169525424 C A LRRC34 Missense_Mutation p.D111Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 3 169546651 169546651 G T LRRIQ4 Missense_Mutation p.E375D 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-AZ-4315-01 3 169572607 169572607 A G LRRC31 Missense_Mutation p.S329P 0.29 tolerated(0.14) possibly_damaging(0.616) TCGA-AZ-4315-01 3 169637265 169637265 G T SAMD7 5'UTR 0.36 TCGA-AZ-4315-01 3 169663917 169663917 A G RP11-379K17.4 RNA 0.32 TCGA-AZ-4315-01 3 169706145 169706145 T C SEC62 Missense_Mutation p.V243A 0.37 deleterious(0.05) possibly_damaging(0.472) TCGA-AZ-4315-01 3 170013719 170013719 C T PRKCI Missense_Mutation p.R480C 0.28 tolerated(0.06) possibly_damaging(0.719) TCGA-AZ-4315-01 3 17052362 17052362 C A PLCL2 Missense_Mutation p.F382L 0.40 deleterious(0) possibly_damaging(0.896) TCGA-AZ-4315-01 3 170584124 170584124 C A RPL22L1 3'UTR 0.29 TCGA-AZ-4315-01 3 170725021 170725021 G A SLC2A2 Silent p.I176I 0.32 TCGA-AZ-4315-01 3 170825896 170825896 T C TNIK Silent p.K780K 0.21 TCGA-AZ-4315-01 3 17209267 17209267 G T TBC1D5 Missense_Mutation p.L658M 0.29 tolerated(0.08) benign(0.403) TCGA-AZ-4315-01 3 172098796 172098796 T G FNDC3B Missense_Mutation p.I1072M 0.25 deleterious(0) possibly_damaging(0.828) TCGA-AZ-4315-01 3 172163081 172163081 T G GHSR Missense_Mutation p.N324T 0.31 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 3 172766791 172766791 T C SPATA16 Missense_Mutation p.T236A 0.37 tolerated(0.39) benign(0.003) TCGA-AZ-4315-01 3 173322294 173322294 C T NLGN1 5'UTR 0.32 TCGA-AZ-4315-01 3 176743292 176743292 C T TBL1XR1 Silent p.R513R 0.33 TCGA-AZ-4315-01 3 178916854 178916854 G T PIK3CA Nonsense_Mutation p.E81* 0.43 TCGA-AZ-4315-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-AZ-4315-01 3 178952088 178952088 A G PIK3CA Missense_Mutation p.H1048R 0.26 tolerated(0.33) benign(0.013) TCGA-AZ-4315-01 3 178968764 178968764 A C KCNMB3 Intron 0.34 TCGA-AZ-4315-01 3 179109949 179109949 A G MFN1 3'UTR 0.34 TCGA-AZ-4315-01 3 179137253 179137253 C T GNB4 Missense_Mutation p.R46Q 0.32 deleterious(0) benign(0.048) TCGA-AZ-4315-01 3 179332767 179332767 C T NDUFB5 Nonsense_Mutation p.R45* 0.26 TCGA-AZ-4315-01 3 179439264 179439264 G A USP13 Silent p.T325T 0.24 TCGA-AZ-4315-01 3 180325738 180325738 G A TTC14 Intron 0.45 TCGA-AZ-4315-01 3 180326218 180326218 T A TTC14 Intron 0.50 TCGA-AZ-4315-01 3 180366111 180366111 G T CCDC39 Missense_Mutation p.L402M 0.21 deleterious(0.03) possibly_damaging(0.543) TCGA-AZ-4315-01 3 180372703 180372703 T C CCDC39 Silent p.E259E 0.25 TCGA-AZ-4315-01 3 180702205 180702205 C A DNAJC19 3'UTR 0.26 TCGA-AZ-4315-01 3 181430977 181430977 T C SOX2 Missense_Mutation p.Y277H 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 3 181431451 181431451 C G SOX2 3'UTR 0.28 TCGA-AZ-4315-01 3 182602677 182602677 T G ATP11B Missense_Mutation p.F882L 0.31 deleterious(0.03) possibly_damaging(0.731) TCGA-AZ-4315-01 3 182662874 182662874 C A DCUN1D1 3'UTR 0.36 TCGA-AZ-4315-01 3 182733233 182733233 G A MCCC1 Missense_Mutation p.S724L 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-AZ-4315-01 3 182910885 182910885 C A MCF2L2 Splice_Site p.X973_splice 0.44 TCGA-AZ-4315-01 3 182987404 182987404 C A B3GNT5 5'UTR 0.55 TCGA-AZ-4315-01 3 183209777 183209777 C T KLHL6 Missense_Mutation p.V602I 0.36 deleterious(0.05) probably_damaging(0.994) TCGA-AZ-4315-01 3 183212015 183212015 C A KLHL6 Missense_Mutation p.W401L 0.38 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 3 183368863 183368863 C T KLHL24 Missense_Mutation p.A240V 0.37 tolerated(0.12) benign(0.139) TCGA-AZ-4315-01 3 183439910 183439910 C T YEATS2 Nonsense_Mutation p.R175* 0.37 TCGA-AZ-4315-01 3 183778059 183778059 G A HTR3C Silent p.A421A 0.28 TCGA-AZ-4315-01 3 183854449 183854449 T C EIF2B5 Missense_Mutation p.F82S 0.30 tolerated(0.11) benign(0.186) TCGA-AZ-4315-01 3 183888754 183888754 C T DVL3 3'UTR 0.40 TCGA-AZ-4315-01 3 183904427 183904427 A G ABCF3 Missense_Mutation p.Y69C 0.36 tolerated(0.11) possibly_damaging(0.566) TCGA-AZ-4315-01 3 183905737 183905737 C T ABCF3 Nonsense_Mutation p.R179* 0.23 TCGA-AZ-4315-01 3 183966938 183966938 C A ALG3 5'Flank 0.28 TCGA-AZ-4315-01 3 183994296 183994296 C T ECE2 Intron 0.24 TCGA-AZ-4315-01 3 183996329 183996329 G A ECE2 Missense_Mutation p.R385K 0.22 tolerated(1) benign(0.003) TCGA-AZ-4315-01 3 184002881 184002881 G A ECE2 Missense_Mutation p.R497H 0.33 tolerated(0.27) benign(0.003) TCGA-AZ-4315-01 3 184049780 184049780 G A EIF4G1 Silent p.A1515A 0.30 TCGA-AZ-4315-01 3 184104283 184104283 C A CHRD Missense_Mutation p.H646N 0.50 tolerated(0.1) possibly_damaging(0.582) TCGA-AZ-4315-01 3 184107282 184107282 C A CHRD 3'UTR 0.29 TCGA-AZ-4315-01 3 184542484 184542484 G T VPS8 Nonsense_Mutation p.E22* 0.29 TCGA-AZ-4315-01 3 184910478 184910478 G A EHHADH Nonsense_Mutation p.R570* 0.27 TCGA-AZ-4315-01 3 185798877 185798877 G A ETV5 Missense_Mutation p.A107V 0.38 deleterious(0.04) benign(0.004) TCGA-AZ-4315-01 3 186281890 186281890 C T TBCCD1 Missense_Mutation p.E77K 0.20 deleterious(0.01) probably_damaging(0.933) TCGA-AZ-4315-01 3 186364079 186364079 G T FETUB Nonsense_Mutation p.E213* 0.33 TCGA-AZ-4315-01 3 186394862 186394862 G A HRG Silent p.P256P 0.31 TCGA-AZ-4315-01 3 186445040 186445040 G T KNG1 Missense_Mutation p.L193F 0.27 deleterious(0.04) benign(0.219) TCGA-AZ-4315-01 3 186507228 186507228 G A EIF4A2 3'UTR 0.30 TCGA-AZ-4315-01 3 186571008 186571008 G A ADIPOQ Missense_Mutation p.G54D 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 186572185 186572185 T G ADIPOQ Missense_Mutation p.Y143D 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 186769117 186769117 C T ST6GAL1 Missense_Mutation p.R230C 0.38 probably_damaging(0.993) TCGA-AZ-4315-01 3 186938849 186938849 T C MASP1 Missense_Mutation p.D628G 0.25 deleterious(0.01) possibly_damaging(0.908) TCGA-AZ-4315-01 3 186974547 186974547 C T MASP1 Missense_Mutation p.E217K 0.25 tolerated(0.05) benign(0.003) TCGA-AZ-4315-01 3 186980367 186980367 G A MASP1 Missense_Mutation p.R127C 0.26 deleterious(0) probably_damaging(0.949) TCGA-AZ-4315-01 3 187386902 187386902 C T SST Missense_Mutation p.R101H 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 187443345 187443345 C T BCL6 Missense_Mutation p.R594Q 0.32 deleterious(0.01) possibly_damaging(0.58) TCGA-AZ-4315-01 3 189612028 189612028 C T TP63 Nonsense_Mutation p.R594* 0.19 TCGA-AZ-4315-01 3 189711983 189711983 G A LEPREL1 Silent p.F241F 0.51 TCGA-AZ-4315-01 3 189713133 189713133 C T LEPREL1 Silent p.A193A 0.32 TCGA-AZ-4315-01 3 191093122 191093122 G A CCDC50 Silent p.T240T 0.27 TCGA-AZ-4315-01 3 191109785 191109785 T C CCDC50 3'UTR 0.30 TCGA-AZ-4315-01 3 192445081 192445081 C T RNU1-20P 3'Flank 0.41 TCGA-AZ-4315-01 3 192980998 192980998 C T HRASLS Missense_Mutation p.R232C 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 193048981 193048981 C A ATP13A5 Missense_Mutation p.K464N 0.27 tolerated(0.24) possibly_damaging(0.84) TCGA-AZ-4315-01 3 193082018 193082018 C T ATP13A5 Missense_Mutation p.A39T 0.32 tolerated(0.09) benign(0.004) TCGA-AZ-4315-01 3 193166053 193166053 C A ATP13A4 Missense_Mutation p.E698D 0.27 deleterious(0.02) benign(0.059) TCGA-AZ-4315-01 3 193210745 193210745 T G ATP13A4 Missense_Mutation p.K165T 0.27 tolerated(0.34) benign(0.209) TCGA-AZ-4315-01 3 194062927 194062927 T C CPN2 Missense_Mutation p.T169A 0.31 tolerated(0.3) benign(0.003) TCGA-AZ-4315-01 3 194079997 194079997 C A LRRC15 3'UTR 0.24 TCGA-AZ-4315-01 3 194126390 194126390 G T ATP13A3 3'UTR 0.28 TCGA-AZ-4315-01 3 194169343 194169343 C A ATP13A3 Missense_Mutation p.K331N 0.37 deleterious(0.01) possibly_damaging(0.493) TCGA-AZ-4315-01 3 194180667 194180667 G A ATP13A3 Missense_Mutation p.R87C 0.42 tolerated(0.18) benign(0.022) TCGA-AZ-4315-01 3 194336413 194336413 G A TMEM44 Missense_Mutation p.S313L 0.18 deleterious(0) possibly_damaging(0.846) TCGA-AZ-4315-01 3 194346665 194346665 G T TMEM44 Missense_Mutation p.L107I 0.30 tolerated(0.1) possibly_damaging(0.87) TCGA-AZ-4315-01 3 194365398 194365398 C A LSG1 Missense_Mutation p.E567D 0.33 tolerated(0.28) benign(0.006) TCGA-AZ-4315-01 3 194409575 194409575 T G FAM43A 3'UTR 0.30 TCGA-AZ-4315-01 3 195295614 195295614 T G APOD 3'UTR 0.38 TCGA-AZ-4315-01 3 195300813 195300813 C A APOD Missense_Mutation p.K51N 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 195702666 195702666 G A SDHAP1 RNA 0.18 TCGA-AZ-4315-01 3 195709098 195709098 G A SDHAP1 RNA 0.10 TCGA-AZ-4315-01 3 195965637 195965637 A C PCYT1A Silent p.T342T 0.35 TCGA-AZ-4315-01 3 196051205 196051205 A G TM4SF19 Missense_Mutation p.V129A 0.21 tolerated(1) benign(0.012) TCGA-AZ-4315-01 3 196083378 196083378 G A UBXN7 3'UTR 0.30 TCGA-AZ-4315-01 3 196083420 196083420 G T UBXN7 3'UTR 0.27 TCGA-AZ-4315-01 3 196230153 196230153 C T RNF168 5'UTR 0.44 TCGA-AZ-4315-01 3 196387045 196387045 C T NRROS Silent p.F177F 0.41 TCGA-AZ-4315-01 3 196387097 196387097 G A NRROS Missense_Mutation p.E195K 0.33 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 3 196387946 196387946 C T NRROS Missense_Mutation p.P478S 0.42 tolerated(0.75) benign(0.118) TCGA-AZ-4315-01 3 196613137 196613137 C A SENP5 Missense_Mutation p.S362Y 0.25 deleterious(0.01) possibly_damaging(0.613) TCGA-AZ-4315-01 3 196613324 196613324 C T SENP5 Silent p.S424S 0.32 TCGA-AZ-4315-01 3 196669310 196669310 T C NCBP2 Missense_Mutation p.D22G 0.09 deleterious(0.01) possibly_damaging(0.511) TCGA-AZ-4315-01 3 196876613 196876613 C T DLG1 Splice_Site p.X212_splice 0.32 TCGA-AZ-4315-01 3 196910640 196910640 G A DLG1 Intron 0.34 TCGA-AZ-4315-01 3 197238612 197238612 G T BDH1 3'UTR 0.36 TCGA-AZ-4315-01 3 197682651 197682651 G A RPL35A 3'UTR 0.34 TCGA-AZ-4315-01 3 197785683 197785683 G T ANKRD18DP RNA 0.24 TCGA-AZ-4315-01 3 197786106 197786106 T C ANKRD18DP RNA 0.23 TCGA-AZ-4315-01 3 19975295 19975295 C A EFHB Missense_Mutation p.M72I 0.31 tolerated_low_confidence(0.23) benign(0) TCGA-AZ-4315-01 3 20156373 20156373 G A KAT2B Splice_Site p.X348_splice 0.22 TCGA-AZ-4315-01 3 21478484 21478484 C T ZNF385D Silent p.S217S 0.30 TCGA-AZ-4315-01 3 21552486 21552486 C T ZNF385D Silent p.T102T 0.30 TCGA-AZ-4315-01 3 23250307 23250307 G T UBE2E2 Missense_Mutation p.K39N 0.32 tolerated(0.08) benign(0.403) TCGA-AZ-4315-01 3 24003633 24003633 G A NR1D2 Missense_Mutation p.R228Q 0.35 tolerated(0.59) benign(0.05) TCGA-AZ-4315-01 3 24185038 24185038 G A THRB Missense_Mutation p.A231V 0.36 tolerated(0.28) benign(0.023) TCGA-AZ-4315-01 3 25679654 25679654 A G TOP2B Splice_Site p.X176_splice 0.28 TCGA-AZ-4315-01 3 25832506 25832506 T G OXSM 5'UTR 0.28 TCGA-AZ-4315-01 3 27436533 27436533 G A SLC4A7 Missense_Mutation p.A917V 0.33 tolerated(0.76) possibly_damaging(0.773) TCGA-AZ-4315-01 3 27472836 27472836 A G SLC4A7 Missense_Mutation p.L359P 0.31 tolerated(0.05) benign(0.001) TCGA-AZ-4315-01 3 27475495 27475495 C A SLC4A7 Missense_Mutation p.E221D 0.32 tolerated(0.05) benign(0.131) TCGA-AZ-4315-01 3 27758890 27758890 G A EOMES Nonsense_Mutation p.R578* 0.34 TCGA-AZ-4315-01 3 27759212 27759212 G A EOMES Silent p.Y470Y 0.37 TCGA-AZ-4315-01 3 28304802 28304802 G A CMC1 Missense_Mutation p.E14K 0.29 deleterious(0.03) benign(0.054) TCGA-AZ-4315-01 3 28476739 28476739 A G ZCWPW2 Silent p.G157G 0.27 TCGA-AZ-4315-01 3 28562602 28562602 G A ZCWPW2 Missense_Mutation p.E302K 0.30 tolerated(0.12) benign(0.002) TCGA-AZ-4315-01 3 28566222 28566222 C A ZCWPW2 3'UTR 0.36 TCGA-AZ-4315-01 3 2944641 2944641 G T CNTN4 Nonsense_Mutation p.E387* 0.11 TCGA-AZ-4315-01 3 2967336 2967336 A C CNTN4 Missense_Mutation p.T411P 0.32 deleterious(0.01) possibly_damaging(0.745) TCGA-AZ-4315-01 3 3067896 3067896 T C CNTN4 Missense_Mutation p.W533R 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 3 3139831 3139831 G T IL5RA Missense_Mutation p.L171I 0.35 deleterious(0) probably_damaging(0.973) TCGA-AZ-4315-01 3 3144406 3144406 C T IL5RA Missense_Mutation p.V61I 0.36 tolerated(0.35) benign(0.005) TCGA-AZ-4315-01 3 31656601 31656601 T C STT3B Silent p.Y294Y 0.32 TCGA-AZ-4315-01 3 31667454 31667454 A C STT3B Missense_Mutation p.K636N 0.28 deleterious(0.02) possibly_damaging(0.708) TCGA-AZ-4315-01 3 31667568 31667568 A C STT3B Missense_Mutation p.K674N 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 32033035 32033035 A G ZNF860 3'UTR 0.27 TCGA-AZ-4315-01 3 32491033 32491033 G A CMTM7 Missense_Mutation p.V141I 0.31 tolerated(0.15) benign(0.044) TCGA-AZ-4315-01 3 32746458 32746458 G T CNOT10 Missense_Mutation p.K151N 0.13 tolerated(0.21) possibly_damaging(0.754) TCGA-AZ-4315-01 3 32996299 32996299 G T CCR4 3'UTR 0.33 TCGA-AZ-4315-01 3 33195329 33195329 G T SUSD5 Silent p.V265V 0.40 TCGA-AZ-4315-01 3 33539994 33539994 G A CLASP2 3'UTR 0.48 TCGA-AZ-4315-01 3 35730834 35730834 G T ARPP21 Missense_Mutation p.D148Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 3 35748563 35748563 G T ARPP21 Nonsense_Mutation p.E262* 0.32 TCGA-AZ-4315-01 3 35778744 35778744 G A ARPP21 Missense_Mutation p.A478T 0.16 tolerated(0.72) benign(0.002) TCGA-AZ-4315-01 3 36524507 36524507 C T STAC Missense_Mutation p.R138C 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 36779785 36779785 C T DCLK3 Silent p.E122E 0.31 TCGA-AZ-4315-01 3 36780122 36780122 C A DCLK3 Missense_Mutation p.S10I 0.28 tolerated(0.06) benign(0.347) TCGA-AZ-4315-01 3 36880131 36880131 C T TRANK1 Missense_Mutation p.S1742N 0.34 tolerated(1) benign(0) TCGA-AZ-4315-01 3 36897091 36897091 C A TRANK1 Missense_Mutation p.K1330N 0.25 tolerated(0.15) possibly_damaging(0.694) TCGA-AZ-4315-01 3 37323717 37323717 G A GOLGA4 Missense_Mutation p.R166Q 0.30 probably_damaging(0.988) TCGA-AZ-4315-01 3 37368058 37368058 G T GOLGA4 Nonsense_Mutation p.E1583* 0.32 TCGA-AZ-4315-01 3 37379173 37379173 A C GOLGA4 Missense_Mutation p.K2130T 0.35 probably_damaging(1) TCGA-AZ-4315-01 3 37567548 37567548 C T ITGA9 Silent p.S453S 0.30 TCGA-AZ-4315-01 3 38103775 38103775 C T DLEC1 Silent p.F263F 0.37 TCGA-AZ-4315-01 3 38182051 38182051 C T MYD88 Silent p.I225I 0.33 TCGA-AZ-4315-01 3 38263114 38263114 G A OXSR1 Missense_Mutation p.R179Q 0.40 deleterious(0.02) benign(0.308) TCGA-AZ-4315-01 3 38354921 38354921 G A SLC22A14 Missense_Mutation p.D370N 0.24 deleterious(0) possibly_damaging(0.822) TCGA-AZ-4315-01 3 38592734 38592734 G A SCN5A Missense_Mutation p.S1710L 0.21 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 3 38595801 38595801 G A SCN5A Silent p.F1594F 0.30 TCGA-AZ-4315-01 3 38628975 38628975 G A SCN5A Silent p.F784F 0.33 TCGA-AZ-4315-01 3 38651230 38651230 T C SCN5A Missense_Mutation p.D310G 0.32 deleterious(0.04) benign(0.047) TCGA-AZ-4315-01 3 38674564 38674564 G A SCN5A Missense_Mutation p.P79S 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 3 38739575 38739575 G A SCN10A Silent p.I1712I 0.09 TCGA-AZ-4315-01 3 38751083 38751083 C A SCN10A Missense_Mutation p.E1389D 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 38770273 38770273 G T SCN10A Silent p.V800V 0.31 TCGA-AZ-4315-01 3 38793718 38793718 C T SCN10A Missense_Mutation p.D583N 0.42 tolerated(0.2) benign(0.04) TCGA-AZ-4315-01 3 38888328 38888328 G A SCN11A Nonsense_Mutation p.R1745* 0.33 TCGA-AZ-4315-01 3 38889083 38889083 G A SCN11A Missense_Mutation p.S1493L 0.41 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 3 38892227 38892227 G T SCN11A Missense_Mutation p.L1358I 0.29 tolerated(0.11) benign(0.237) TCGA-AZ-4315-01 3 38936337 38936337 C T SCN11A Missense_Mutation p.R841Q 0.27 deleterious(0.05) benign(0.043) TCGA-AZ-4315-01 3 38961476 38961476 C A SCN11A Missense_Mutation p.K303N 0.39 tolerated(0.45) possibly_damaging(0.843) TCGA-AZ-4315-01 3 39228467 39228467 A G XIRP1 Missense_Mutation p.S824P 0.34 tolerated(0.22) possibly_damaging(0.514) TCGA-AZ-4315-01 3 39229809 39229809 A G XIRP1 Silent p.G376G 0.28 TCGA-AZ-4315-01 3 39554986 39554986 G A MOBP 3'UTR 0.44 TCGA-AZ-4315-01 3 40251509 40251509 G T MYRIP Missense_Mutation p.K610N 0.36 deleterious(0.03) possibly_damaging(0.872) TCGA-AZ-4315-01 3 403438 403438 T C CHL1 Missense_Mutation p.Y455H 0.28 tolerated(0.49) benign(0.069) TCGA-AZ-4315-01 3 40353619 40353619 T G EIF1B 3'UTR 0.24 TCGA-AZ-4315-01 3 40528868 40528868 A C ZNF619 Missense_Mutation p.E329D 0.28 deleterious(0.05) possibly_damaging(0.535) TCGA-AZ-4315-01 3 40529013 40529013 C T ZNF619 Missense_Mutation p.H378Y 0.37 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 3 40529566 40529566 C A ZNF619 Missense_Mutation p.S562Y 0.32 tolerated_low_confidence(0.16) possibly_damaging(0.496) TCGA-AZ-4315-01 3 41267325 41267325 T G CTNNB1 Missense_Mutation p.I303M 0.38 deleterious(0.05) benign(0.075) TCGA-AZ-4315-01 3 41275180 41275180 G A CTNNB1 Missense_Mutation p.R449H 0.28 tolerated(0.55) benign(0.065) TCGA-AZ-4315-01 3 41277291 41277291 G A CTNNB1 Missense_Mutation p.R587Q 0.34 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 3 41756778 41756778 C T ULK4 Missense_Mutation p.R862Q 0.30 deleterious(0) probably_damaging(0.975) TCGA-AZ-4315-01 3 42166929 42166929 G A TRAK1 Missense_Mutation p.D37N 0.34 tolerated(0.09) benign(0.001) TCGA-AZ-4315-01 3 42251777 42251777 C A TRAK1 Intron 0.28 TCGA-AZ-4315-01 3 42299501 42299501 A G CCK 3'UTR 0.33 TCGA-AZ-4315-01 3 423883 423883 A G CHL1 Missense_Mutation p.N633S 0.29 tolerated(0.31) benign(0.012) TCGA-AZ-4315-01 3 42730397 42730397 G T KLHL40 Missense_Mutation p.K486N 0.43 tolerated(0.05) benign(0.016) TCGA-AZ-4315-01 3 42915874 42915874 G A CYP8B1 Missense_Mutation p.R479C 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 3 42956385 42956385 A G ZNF662 Missense_Mutation p.K300E 0.38 deleterious(0) probably_damaging(0.935) TCGA-AZ-4315-01 3 43743761 43743761 T C ABHD5 Missense_Mutation p.I63T 0.31 deleterious(0) probably_damaging(0.918) TCGA-AZ-4315-01 3 43743777 43743777 C A ABHD5 Missense_Mutation p.F68L 0.35 tolerated(1) benign(0) TCGA-AZ-4315-01 3 44540723 44540723 C T ZNF852 Missense_Mutation p.E516K 0.42 tolerated_low_confidence(1) benign(0.001) TCGA-AZ-4315-01 3 44636816 44636816 A C ZNF660 3'UTR 0.28 TCGA-AZ-4315-01 3 45804465 45804465 G A SLC6A20 Missense_Mutation p.S468F 0.33 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 3 45814090 45814090 C T SLC6A20 Silent p.A200A 0.36 TCGA-AZ-4315-01 3 45944463 45944463 G A CCR9 3'UTR 0.27 TCGA-AZ-4315-01 3 46306747 46306747 T C CCR3 Missense_Mutation p.M54T 0.36 deleterious(0.04) benign(0) TCGA-AZ-4315-01 3 46415545 46415545 C A CCR5 3'UTR 0.27 TCGA-AZ-4315-01 3 46449867 46449867 C T CCRL2 Silent p.G111G 0.34 TCGA-AZ-4315-01 3 46479467 46479467 C T LTF Missense_Mutation p.A688T 0.27 tolerated(1) benign(0) TCGA-AZ-4315-01 3 46486806 46486806 G A LTF Silent p.G493G 0.32 TCGA-AZ-4315-01 3 46563146 46563146 A G LRRC2 Missense_Mutation p.F311S 0.40 deleterious(0) possibly_damaging(0.851) TCGA-AZ-4315-01 3 46720750 46720750 C T ALS2CL Missense_Mutation p.D526N 0.37 tolerated(0.06) probably_damaging(0.969) TCGA-AZ-4315-01 3 46751172 46751172 G T TMIE Missense_Mutation p.E155D 0.30 tolerated_low_confidence(0.07) unknown(0) TCGA-AZ-4315-01 3 4687079 4687079 C T ITPR1 Silent p.S211S 0.27 TCGA-AZ-4315-01 3 46874577 46874577 C T PRSS42 Missense_Mutation p.R164Q 0.28 tolerated(0.75) benign(0.015) TCGA-AZ-4315-01 3 47147573 47147573 C T SETD2 Missense_Mutation p.D1585N 0.34 tolerated(0.08) possibly_damaging(0.752) TCGA-AZ-4315-01 3 4735385 4735385 A G ITPR1 Missense_Mutation p.D1399G 0.27 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 3 47458834 47458834 C T SCAP Missense_Mutation p.G977D 0.37 tolerated(0.36) benign(0.179) TCGA-AZ-4315-01 3 47537550 47537550 G A ELP6 3'UTR 0.34 TCGA-AZ-4315-01 3 47545849 47545849 T G ELP6 Missense_Mutation p.Q98H 0.41 tolerated(0.08) benign(0.009) TCGA-AZ-4315-01 3 47618886 47618886 G A CSPG5 Silent p.I210I 0.22 TCGA-AZ-4315-01 3 47957546 47957546 C A MAP4 Missense_Mutation p.D591Y 0.29 deleterious(0) probably_damaging(0.928) TCGA-AZ-4315-01 3 48266856 48266856 G T CAMP Missense_Mutation p.R155I 0.24 deleterious(0.01) possibly_damaging(0.554) TCGA-AZ-4315-01 3 4829763 4829763 G T ITPR1 Missense_Mutation p.D2235Y 0.31 deleterious(0) possibly_damaging(0.896) TCGA-AZ-4315-01 3 4829796 4829796 G T ITPR1 Nonsense_Mutation p.E2246* 0.36 TCGA-AZ-4315-01 3 48561204 48561204 C A PFKFB4 Missense_Mutation p.E384D 0.19 benign(0.079) TCGA-AZ-4315-01 3 48667082 48667082 T C SLC26A6 Missense_Mutation p.Y531C 0.28 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 3 48699417 48699417 G A CELSR3 Silent p.G217G 0.25 TCGA-AZ-4315-01 3 48732630 48732630 A G IP6K2 Missense_Mutation p.V32A 0.37 deleterious(0.01) probably_damaging(0.937) TCGA-AZ-4315-01 3 49057608 49057608 C T DALRD3 5'Flank 0.46 TCGA-AZ-4315-01 3 49084578 49084578 T G QRICH1 Missense_Mutation p.E480D 0.30 tolerated(0.38) benign(0.005) TCGA-AZ-4315-01 3 49159137 49159137 G A LAMB2 Missense_Mutation p.R1694C 0.38 deleterious(0.04) probably_damaging(0.935) TCGA-AZ-4315-01 3 49215425 49215425 G A C3orf84 Missense_Mutation p.R87W 0.30 deleterious(0.01) possibly_damaging(0.832) TCGA-AZ-4315-01 3 49335388 49335388 C T USP4 Missense_Mutation p.A536T 0.34 tolerated(1) benign(0.004) TCGA-AZ-4315-01 3 49689675 49689675 C T BSN Missense_Mutation p.R896C 0.33 unknown(0) TCGA-AZ-4315-01 3 49692081 49692081 C T BSN Missense_Mutation p.L1698F 0.41 unknown(0) TCGA-AZ-4315-01 3 49694869 49694869 G A BSN Missense_Mutation p.R2627H 0.32 unknown(0) TCGA-AZ-4315-01 3 49698984 49698984 G T BSN Missense_Mutation p.D3236Y 0.38 unknown(0) TCGA-AZ-4315-01 3 49713368 49713368 G A APEH Silent p.A137A 0.29 TCGA-AZ-4315-01 3 49756602 49756602 C T AMIGO3 Silent p.A99A 0.32 TCGA-AZ-4315-01 3 49758633 49758633 G A RNF123 Silent p.Q1280Q 0.32 TCGA-AZ-4315-01 3 49866639 49866639 C T TRAIP Missense_Mutation p.R436H 0.39 tolerated(0.05) benign(0.232) TCGA-AZ-4315-01 3 49881329 49881329 C T TRAIP Missense_Mutation p.D105N 0.35 tolerated(0.06) benign(0.394) TCGA-AZ-4315-01 3 49898701 49898701 C A CAMKV Missense_Mutation p.K158N 0.29 tolerated(0.17) probably_damaging(0.999) TCGA-AZ-4315-01 3 50091793 50091793 G A RBM6 Missense_Mutation p.R553Q 0.20 tolerated(0.16) benign(0.003) TCGA-AZ-4315-01 3 50155947 50155947 C T RBM5 3'UTR 0.22 TCGA-AZ-4315-01 3 50231061 50231061 C T GNAT1 Silent p.R138R 0.44 TCGA-AZ-4315-01 3 50231956 50231956 A G GNAT1 Missense_Mutation p.H244R 0.29 tolerated(0.29) probably_damaging(0.997) TCGA-AZ-4315-01 3 5024773 5024773 C T BHLHE40 Missense_Mutation p.S212L 0.25 tolerated(0.26) benign(0.001) TCGA-AZ-4315-01 3 50311201 50311201 C A SEMA3B Intron 0.24 TCGA-AZ-4315-01 3 50879131 50879131 G T DOCK3 Missense_Mutation p.K49N 0.32 deleterious(0) possibly_damaging(0.812) TCGA-AZ-4315-01 3 50879148 50879148 T C DOCK3 Splice_Site p.X54_splice 0.25 TCGA-AZ-4315-01 3 51418758 51418758 G A DOCK3 Missense_Mutation p.R1954Q 0.33 deleterious_low_confidence(0.01) benign(0.049) TCGA-AZ-4315-01 3 51431979 51431979 T G RBM15B 3'UTR 0.33 TCGA-AZ-4315-01 3 51624409 51624409 T G RAD54L2 5'UTR 0.33 TCGA-AZ-4315-01 3 51750049 51750049 G A GRM2 Missense_Mutation p.E754K 0.35 deleterious(0.03) benign(0.376) TCGA-AZ-4315-01 3 51864500 51864500 C T IQCF3 Missense_Mutation p.R50C 0.19 deleterious(0) probably_damaging(0.947) TCGA-AZ-4315-01 3 52356534 52356534 G C DNAH1 Missense_Mutation p.V26L 0.43 benign(0.002) TCGA-AZ-4315-01 3 52428588 52428588 G A DNAH1 Silent p.S3578S 0.38 TCGA-AZ-4315-01 3 5246902 5246902 G T EDEM1 Missense_Mutation p.S398I 0.43 deleterious(0.01) possibly_damaging(0.61) TCGA-AZ-4315-01 3 52727250 52727250 T G GNL3 Missense_Mutation p.F364L 0.31 tolerated(0.08) benign(0.167) TCGA-AZ-4315-01 3 52729561 52729561 G A GLT8D1 Missense_Mutation p.R230C 0.28 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 3 52816233 52816233 G T ITIH1 Missense_Mutation p.V294F 0.39 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 3 52822061 52822061 C T ITIH1 Silent p.L662L 0.36 TCGA-AZ-4315-01 3 52889426 52889426 A G TMEM110 Silent p.R65R 0.36 TCGA-AZ-4315-01 3 52941170 52941170 G A SFMBT1 Missense_Mutation p.S749L 0.24 tolerated(0.29) benign(0.017) TCGA-AZ-4315-01 3 53226261 53226261 C T PRKCD Silent p.F670F 0.26 TCGA-AZ-4315-01 3 53684899 53684899 G C CACNA1D Missense_Mutation p.V193L 0.32 tolerated(1) probably_damaging(0.994) TCGA-AZ-4315-01 3 53783458 53783458 G T CACNA1D Nonsense_Mutation p.E1180* 0.37 TCGA-AZ-4315-01 3 54596957 54596957 G A CACNA2D3 Silent p.P225P 0.24 TCGA-AZ-4315-01 3 54604068 54604068 G A CACNA2D3 Silent p.A275A 0.39 TCGA-AZ-4315-01 3 55504307 55504307 C T WNT5A Missense_Mutation p.G319D 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 3 55513590 55513590 G A WNT5A Missense_Mutation p.S48L 0.26 tolerated(0.22) benign(0.041) TCGA-AZ-4315-01 3 55733440 55733440 G A ERC2 Missense_Mutation p.S938L 0.28 tolerated(0.08) benign(0.006) TCGA-AZ-4315-01 3 56026216 56026216 G A ERC2 Silent p.L708L 0.24 TCGA-AZ-4315-01 3 56675453 56675453 A G FAM208A Missense_Mutation p.V848A 0.37 tolerated(0.59) benign(0.001) TCGA-AZ-4315-01 3 56789163 56789163 C T ARHGEF3 Missense_Mutation p.R106H 0.25 deleterious(0.01) benign(0.399) TCGA-AZ-4315-01 3 56992868 56992868 C T ARHGEF3 Missense_Mutation p.A38T 0.30 tolerated_low_confidence(0.71) benign(0.024) TCGA-AZ-4315-01 3 57132016 57132016 A G IL17RD Missense_Mutation p.L572P 0.42 tolerated_low_confidence(0.37) benign(0.014) TCGA-AZ-4315-01 3 57232138 57232138 G T HESX1 3'UTR 0.32 TCGA-AZ-4315-01 3 57291402 57291402 C A APPL1 Missense_Mutation p.S459Y 0.32 tolerated(0.08) probably_damaging(0.998) TCGA-AZ-4315-01 3 57344815 57344815 T G DNAH12 Missense_Mutation p.K328T 0.35 tolerated(0.35) benign(0.012) TCGA-AZ-4315-01 3 57368529 57368529 C A DNAH12 Missense_Mutation p.Q79H 0.23 deleterious(0.02) probably_damaging(0.919) TCGA-AZ-4315-01 3 57391410 57391410 G T DNAH12 Silent p.I2163I 0.31 TCGA-AZ-4315-01 3 57394104 57394104 C T DNAH12 Missense_Mutation p.R2041Q 0.35 tolerated(0.56) possibly_damaging(0.553) TCGA-AZ-4315-01 3 57394155 57394155 C T DNAH12 Missense_Mutation p.R2024Q 0.29 deleterious(0.01) possibly_damaging(0.553) TCGA-AZ-4315-01 3 57438668 57438668 G A DNAH12 Missense_Mutation p.R1207C 0.28 tolerated(0.14) possibly_damaging(0.689) TCGA-AZ-4315-01 3 57445327 57445327 C A DNAH12 Missense_Mutation p.D952Y 0.40 deleterious(0) probably_damaging(0.961) TCGA-AZ-4315-01 3 57445483 57445483 C A DNAH12 Nonsense_Mutation p.E900* 0.30 TCGA-AZ-4315-01 3 57563090 57563090 T C ARF4 Missense_Mutation p.N95D 0.35 deleterious_low_confidence(0.01) benign(0.374) TCGA-AZ-4315-01 3 58178384 58178384 G T DNASE1L3 3'UTR 0.38 TCGA-AZ-4315-01 3 58178638 58178638 G A DNASE1L3 Intron 0.32 TCGA-AZ-4315-01 3 58260429 58260429 G T ABHD6 Nonsense_Mutation p.E190* 0.35 TCGA-AZ-4315-01 3 61734635 61734635 G A PTPRG Missense_Mutation p.D57N 0.28 tolerated(0.09) benign(0.01) TCGA-AZ-4315-01 3 62384973 62384973 C A CADPS 3'UTR 0.48 TCGA-AZ-4315-01 3 62452073 62452073 T G CADPS Missense_Mutation p.K1165Q 0.28 tolerated(0.31) benign(0.403) TCGA-AZ-4315-01 3 63601224 63601224 T G SYNPR 3'UTR 0.27 TCGA-AZ-4315-01 3 63898559 63898559 G A ATXN7 Nonsense_Mutation p.W95* 0.32 TCGA-AZ-4315-01 3 63965705 63965705 G A ATXN7 Missense_Mutation p.R205H 0.34 tolerated(0.41) probably_damaging(0.993) TCGA-AZ-4315-01 3 64133203 64133203 G T PRICKLE2 Silent p.S321S 0.39 TCGA-AZ-4315-01 3 64599122 64599122 G A ADAMTS9 Nonsense_Mutation p.R1085* 0.29 TCGA-AZ-4315-01 3 64606904 64606904 C T ADAMTS9 Missense_Mutation p.R900Q 0.27 deleterious(0.01) benign(0.298) TCGA-AZ-4315-01 3 64619485 64619485 G T ADAMTS9 Missense_Mutation p.L643I 0.09 deleterious(0.02) benign(0.017) TCGA-AZ-4315-01 3 66420958 66420958 C T SLC25A26 Silent p.G213G 0.26 TCGA-AZ-4315-01 3 66449392 66449392 A G LRIG1 Splice_Site p.X411_splice 0.28 TCGA-AZ-4315-01 3 67548572 67548572 T G SUCLG2 Missense_Mutation p.N302T 0.34 tolerated(0.09) possibly_damaging(0.788) TCGA-AZ-4315-01 3 69027515 69027515 C T EOGT Missense_Mutation p.R385Q 0.34 tolerated(0.91) benign(0.002) TCGA-AZ-4315-01 3 69077112 69077112 C A TMF1 Missense_Mutation p.R899I 0.32 deleterious(0) benign(0.088) TCGA-AZ-4315-01 3 69097698 69097698 A G TMF1 Missense_Mutation p.V53A 0.39 tolerated_low_confidence(0.15) benign(0.009) TCGA-AZ-4315-01 3 69105826 69105826 A G UBA3 Silent p.N340N 0.30 TCGA-AZ-4315-01 3 69168290 69168290 T G LMOD3 Missense_Mutation p.K406Q 0.33 tolerated(0.06) benign(0.082) TCGA-AZ-4315-01 3 69169048 69169048 T C LMOD3 Missense_Mutation p.D153G 0.36 tolerated(0.42) benign(0.005) TCGA-AZ-4315-01 3 70008529 70008529 G T MITF Missense_Mutation p.K373N 0.25 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 3 71247043 71247043 G T FOXP1 3'UTR 0.14 TCGA-AZ-4315-01 3 72427358 72427358 C T RYBP 3'UTR 0.42 TCGA-AZ-4315-01 3 72427621 72427621 G A RYBP Missense_Mutation p.S290L 0.32 deleterious(0) possibly_damaging(0.776) TCGA-AZ-4315-01 3 72799566 72799566 A G SHQ1 Missense_Mutation p.S535P 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-AZ-4315-01 3 72971402 72971402 C T GXYLT2 Silent p.I172I 0.31 TCGA-AZ-4315-01 3 75471902 75471902 C T FAM86DP RNA 0.25 TCGA-AZ-4315-01 3 75786357 75786357 C A ZNF717 Missense_Mutation p.R806I 0.60 deleterious(0.04) benign(0.002) TCGA-AZ-4315-01 3 75787031 75787031 A G ZNF717 Silent p.H581H 0.31 TCGA-AZ-4315-01 3 77542424 77542424 A G ROBO2 Missense_Mutation p.N249D 0.43 tolerated(0.08) possibly_damaging(0.621) TCGA-AZ-4315-01 3 77611880 77611880 A G ROBO2 Missense_Mutation p.T522A 0.38 tolerated(0.07) benign(0.217) TCGA-AZ-4315-01 3 78655953 78655953 A G ROBO1 Silent p.N1558N 0.30 TCGA-AZ-4315-01 3 78656116 78656116 C T ROBO1 Missense_Mutation p.R1504Q 0.33 tolerated(0.12) probably_damaging(0.945) TCGA-AZ-4315-01 3 78685140 78685140 G T ROBO1 Silent p.T1052T 0.31 TCGA-AZ-4315-01 3 78717086 78717086 T G ROBO1 Missense_Mutation p.N638T 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-AZ-4315-01 3 81699046 81699046 C A GBE1 Missense_Mutation p.E152D 0.12 tolerated(0.08) benign(0.05) TCGA-AZ-4315-01 3 8590330 8590330 G A LMCD1 Missense_Mutation p.R155H 0.26 deleterious(0.03) benign(0.061) TCGA-AZ-4315-01 3 87313449 87313449 C T POU1F1 Missense_Mutation p.R169Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 3 8775601 8775601 C T CAV3 Silent p.I13I 0.31 TCGA-AZ-4315-01 3 88041967 88041967 C T HTR1F 3'UTR 0.28 TCGA-AZ-4315-01 3 89445006 89445006 G A EPHA3 Silent p.T442T 0.27 TCGA-AZ-4315-01 3 89468455 89468455 G A EPHA3 Silent p.Q663Q 0.29 TCGA-AZ-4315-01 3 8981263 8981263 C T RAD18 Missense_Mutation p.E227K 0.28 tolerated(0.05) possibly_damaging(0.509) TCGA-AZ-4315-01 3 8983220 8983220 C T RAD18 Missense_Mutation p.A179T 0.32 tolerated(0.52) benign(0.003) TCGA-AZ-4315-01 3 9290790 9290790 A C SRGAP3 5'UTR 0.33 TCGA-AZ-4315-01 3 93780066 93780066 G A DHFRL1 Missense_Mutation p.A97V 0.32 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 3 9406718 9406718 G T THUMPD3 5'UTR 0.26 TCGA-AZ-4315-01 3 9482160 9482160 G A SETD5 Silent p.Q196Q 0.35 TCGA-AZ-4315-01 3 9486878 9486878 G A SETD5 Missense_Mutation p.R445Q 0.32 tolerated(0.1) probably_damaging(0.996) TCGA-AZ-4315-01 3 9489384 9489384 A C SETD5 Missense_Mutation p.E599D 0.42 tolerated(0.07) probably_damaging(0.99) TCGA-AZ-4315-01 3 97124058 97124058 G A EPHA6 Nonsense_Mutation p.W557* 0.34 TCGA-AZ-4315-01 3 97251321 97251321 G T EPHA6 Nonsense_Mutation p.E774* 0.28 TCGA-AZ-4315-01 3 97367157 97367157 C A EPHA6 Intron 0.38 TCGA-AZ-4315-01 3 97506848 97506848 C T ARL6 Nonsense_Mutation p.R122* 0.29 TCGA-AZ-4315-01 3 97516985 97516985 A C ARL6 3'UTR 0.41 TCGA-AZ-4315-01 3 97731392 97731393 - A GABRR3 Intron 0.21 TCGA-AZ-4315-01 3 97852299 97852299 G A OR5H1 Missense_Mutation p.G253E 0.30 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 3 97869154 97869154 G T OR5H14 Missense_Mutation p.D309Y 0.35 deleterious_low_confidence(0.02) benign(0.036) TCGA-AZ-4315-01 3 98110105 98110105 T C OR5K3 Missense_Mutation p.L199S 0.32 deleterious(0) possibly_damaging(0.772) TCGA-AZ-4315-01 3 98110408 98110409 - T OR5K3 Frame_Shift_Ins p.K300Nfs*? 0.24 TCGA-AZ-4315-01 3 98217008 98217008 C T OR5K2 Missense_Mutation p.L162F 0.35 tolerated(0.56) benign(0.019) TCGA-AZ-4315-01 3 98235943 98235943 C T CLDND1 Missense_Mutation p.R188Q 0.31 tolerated(0.09) benign(0.011) TCGA-AZ-4315-01 3 98240086 98240086 T G CLDND1 Missense_Mutation p.E84D 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-AZ-4315-01 3 9827055 9827055 C A TADA3 Nonsense_Mutation p.E289* 0.34 TCGA-AZ-4315-01 3 98518305 98518305 C T DCBLD2 Missense_Mutation p.E747K 0.29 deleterious(0.05) benign(0.368) TCGA-AZ-4315-01 3 9870796 9870796 T C TTLL3 Missense_Mutation p.I567T 0.35 deleterious(0.01) benign(0.253) TCGA-AZ-4315-01 3 9908842 9908842 C T CIDEC Silent p.P241P 0.30 TCGA-AZ-4315-01 3 9908895 9908895 C T CIDEC Missense_Mutation p.D224N 0.38 tolerated(0.05) benign(0.081) TCGA-AZ-4315-01 3 99513206 99513206 A G COL8A1 Missense_Mutation p.Y154C 0.32 tolerated(0.14) unknown(0) TCGA-AZ-4315-01 3 99569535 99569535 C T FILIP1L Missense_Mutation p.A329T 0.36 tolerated(0.27) benign(0.05) TCGA-AZ-4315-01 4 100002532 100002532 G T ADH5 Missense_Mutation p.L110I 0.39 deleterious(0.03) benign(0.313) TCGA-AZ-4315-01 4 100131313 100131313 C T ADH6 Missense_Mutation p.A165T 0.30 deleterious(0) possibly_damaging(0.668) TCGA-AZ-4315-01 4 100131323 100131323 A C ADH6 Missense_Mutation p.I161M 0.44 deleterious(0) probably_damaging(0.97) TCGA-AZ-4315-01 4 100228897 100228897 C A ADH1B 3'UTR 0.23 TCGA-AZ-4315-01 4 100242470 100242470 C A ADH1B Splice_Site p.X6_splice 0.33 TCGA-AZ-4315-01 4 100340271 100340271 G A ADH7 Missense_Mutation p.A298V 0.28 deleterious(0.02) benign(0.407) TCGA-AZ-4315-01 4 100341930 100341930 G A ADH7 Silent p.C215C 0.36 TCGA-AZ-4315-01 4 100349277 100349277 C T ADH7 Missense_Mutation p.R125H 0.29 tolerated(0.44) benign(0.01) TCGA-AZ-4315-01 4 100529982 100529982 G A MTTP Silent p.V539V 0.38 TCGA-AZ-4315-01 4 100787260 100787260 G T DAPP1 Missense_Mutation p.K252N 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-AZ-4315-01 4 100806800 100806800 G A LAMTOR3 Nonsense_Mutation p.R46* 0.40 TCGA-AZ-4315-01 4 102751182 102751182 G A BANK1 Silent p.K96K 0.27 TCGA-AZ-4315-01 4 103505872 103505872 G T NFKB1 Missense_Mutation p.D321Y 0.27 deleterious(0) probably_damaging(0.972) TCGA-AZ-4315-01 4 103553207 103553207 G T MANBA 3'UTR 0.31 TCGA-AZ-4315-01 4 103610842 103610842 C A MANBA Splice_Site p.X284_splice 0.28 TCGA-AZ-4315-01 4 103806264 103806264 G T CISD2 Intron 0.25 TCGA-AZ-4315-01 4 103806379 103806379 A G CISD2 Missense_Mutation p.E37G 0.36 deleterious(0) possibly_damaging(0.836) TCGA-AZ-4315-01 4 103866357 103866357 G T SLC9B1 Missense_Mutation p.L216I 0.32 tolerated(0.96) benign(0.241) TCGA-AZ-4315-01 4 103988728 103988728 A G SLC9B2 5'UTR 0.34 TCGA-AZ-4315-01 4 104012391 104012391 G A BDH2 Silent p.F100F 0.32 TCGA-AZ-4315-01 4 104070124 104070124 A G CENPE Silent p.A1240A 0.37 TCGA-AZ-4315-01 4 106155903 106155903 G A TET2 Silent p.S268S 0.31 TCGA-AZ-4315-01 4 106157187 106157187 C T TET2 Silent p.S696S 0.30 TCGA-AZ-4315-01 4 106158562 106158562 T G TET2 Intron 0.32 TCGA-AZ-4315-01 4 106158727 106158727 T C TET2 Intron 0.35 TCGA-AZ-4315-01 4 106374775 106374775 C T PPA2 Missense_Mutation p.A83T 0.30 tolerated(0.11) probably_damaging(0.998) TCGA-AZ-4315-01 4 106374792 106374792 C A PPA2 Missense_Mutation p.G77V 0.32 tolerated(0.15) possibly_damaging(0.642) TCGA-AZ-4315-01 4 106613178 106613178 G A INTS12 Silent p.R204R 0.27 TCGA-AZ-4315-01 4 106890234 106890234 G A NPNT 3'UTR 0.37 TCGA-AZ-4315-01 4 107845713 107845713 G T DKK2 Nonsense_Mutation p.S173* 0.35 TCGA-AZ-4315-01 4 109740474 109740474 G A COL25A1 Silent p.G619G 0.56 TCGA-AZ-4315-01 4 110433201 110433201 G A SEC24B Missense_Mutation p.R622H 0.38 tolerated(0.13) benign(0.407) TCGA-AZ-4315-01 4 110608688 110608688 A G CCDC109B Silent p.K317K 0.38 TCGA-AZ-4315-01 4 113352092 113352092 T C ALPK1 Silent p.H463H 0.35 TCGA-AZ-4315-01 4 113538706 113538706 G A C4orf21 Missense_Mutation p.S831L 0.39 deleterious(0) possibly_damaging(0.889) TCGA-AZ-4315-01 4 113539055 113539056 - A C4orf21 Frame_Shift_Ins p.I715Yfs*5 0.26 TCGA-AZ-4315-01 4 114214444 114214444 T G ANK2 Intron 0.67 TCGA-AZ-4315-01 4 114251508 114251508 C T ANK2 Nonsense_Mutation p.R1003* 0.22 TCGA-AZ-4315-01 4 114271386 114271386 C T ANK2 Silent p.I1469I 0.22 TCGA-AZ-4315-01 4 114290889 114290889 C T ANK2 Silent p.L3846L 0.29 TCGA-AZ-4315-01 4 119059258 119059258 C T NDST3 Missense_Mutation p.S425L 0.28 deleterious(0) possibly_damaging(0.731) TCGA-AZ-4315-01 4 119064714 119064714 C A NDST3 Missense_Mutation p.L472I 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-AZ-4315-01 4 119229706 119229706 C T PRSS12 Missense_Mutation p.E506K 0.35 tolerated(0.1) possibly_damaging(0.549) TCGA-AZ-4315-01 4 119237380 119237380 T C PRSS12 Missense_Mutation p.T417A 0.34 tolerated(0.06) benign(0.345) TCGA-AZ-4315-01 4 119659454 119659454 A G SEC24D Missense_Mutation p.Y820H 0.27 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 4 120221741 120221741 C T C4orf3 Missense_Mutation p.E117K 0.36 tolerated_low_confidence(0.12) unknown(0) TCGA-AZ-4315-01 4 120243316 120243316 A G FABP2 5'UTR 0.26 TCGA-AZ-4315-01 4 120423756 120423756 C A PDE5A Nonsense_Mutation p.E796* 0.27 TCGA-AZ-4315-01 4 120527982 120527982 G T PDE5A Missense_Mutation p.A208D 0.43 tolerated(0.12) probably_damaging(0.978) TCGA-AZ-4315-01 4 120528215 120528215 C A PDE5A Missense_Mutation p.K130N 0.27 tolerated(0.23) possibly_damaging(0.724) TCGA-AZ-4315-01 4 122053786 122053786 C A TNIP3 3'UTR 0.34 TCGA-AZ-4315-01 4 122824166 122824166 G T TRPC3 Silent p.S768S 0.28 TCGA-AZ-4315-01 4 122872746 122872746 G A TRPC3 Silent p.G30G 0.53 TCGA-AZ-4315-01 4 123128776 123128776 A G KIAA1109 Missense_Mutation p.T579A 0.32 possibly_damaging(0.855) TCGA-AZ-4315-01 4 123176293 123176293 G T KIAA1109 Missense_Mutation p.S2078I 0.28 probably_damaging(0.997) TCGA-AZ-4315-01 4 123229259 123229259 C A KIAA1109 Missense_Mutation p.L3333I 0.29 probably_damaging(0.99) TCGA-AZ-4315-01 4 123276965 123276965 C T KIAA1109 Missense_Mutation p.R4774C 0.31 probably_damaging(0.998) TCGA-AZ-4315-01 4 123283194 123283194 C A KIAA1109 Missense_Mutation p.S4937Y 0.46 possibly_damaging(0.797) TCGA-AZ-4315-01 4 123542401 123542401 G A IL21 5'Flank 0.38 TCGA-AZ-4315-01 4 123664848 123664848 A C BBS12 Missense_Mutation p.T601P 0.35 tolerated(0.07) possibly_damaging(0.778) TCGA-AZ-4315-01 4 123813634 123813634 A C FGF2 3'UTR 0.41 TCGA-AZ-4315-01 4 123813824 123813824 G A NUDT6 3'UTR 0.26 TCGA-AZ-4315-01 4 123814246 123814246 T C NUDT6 Missense_Mutation p.K230E 0.41 tolerated(0.37) possibly_damaging(0.631) TCGA-AZ-4315-01 4 123814394 123814394 G A FGF2 3'UTR 0.16 TCGA-AZ-4315-01 4 124322995 124322995 T C SPRY1 Silent p.I83I 0.34 TCGA-AZ-4315-01 4 124324318 124324318 C A SPRY1 3'UTR 0.31 TCGA-AZ-4315-01 4 1245075 1245075 G A CTBP1 5'Flank 0.44 TCGA-AZ-4315-01 4 125592206 125592206 A G ANKRD50 Silent p.D742D 0.24 TCGA-AZ-4315-01 4 126239353 126239353 C T FAT4 Missense_Mutation p.A596V 0.36 possibly_damaging(0.601) TCGA-AZ-4315-01 4 126370198 126370198 C A FAT4 Missense_Mutation p.S2676Y 0.24 possibly_damaging(0.74) TCGA-AZ-4315-01 4 126372196 126372196 G A FAT4 Missense_Mutation p.R3342Q 0.34 probably_damaging(0.992) TCGA-AZ-4315-01 4 126373366 126373367 - T FAT4 Frame_Shift_Ins p.L3734Ffs*22 0.20 TCGA-AZ-4315-01 4 126373659 126373659 C T FAT4 Missense_Mutation p.R3830C 0.28 benign(0.326) TCGA-AZ-4315-01 4 126411126 126411126 C A FAT4 Missense_Mutation p.S4383R 0.33 benign(0.021) TCGA-AZ-4315-01 4 126412734 126412734 G T FAT4 Missense_Mutation p.M4919I 0.34 benign(0) TCGA-AZ-4315-01 4 128748511 128748511 A C HSPA4L Missense_Mutation p.K700Q 0.34 tolerated(0.26) benign(0.041) TCGA-AZ-4315-01 4 129043216 129043216 G A LARP1B Missense_Mutation p.R466Q 0.26 deleterious(0.02) benign(0.087) TCGA-AZ-4315-01 4 129873672 129873672 G A SCLT1 Intron 0.35 TCGA-AZ-4315-01 4 129925017 129925017 A C SCLT1 Nonsense_Mutation p.L102* 0.30 TCGA-AZ-4315-01 4 129960473 129960473 T G SCLT1 Intron 0.38 TCGA-AZ-4315-01 4 1333209 1333209 C T MAEA 3'UTR 0.45 TCGA-AZ-4315-01 4 13370004 13370004 C A RAB28 3'UTR 0.40 TCGA-AZ-4315-01 4 13373447 13373447 C T RAB28 Intron 0.25 TCGA-AZ-4315-01 4 134071394 134071394 C T PCDH10 Silent p.F33F 0.33 TCGA-AZ-4315-01 4 134072176 134072176 C T PCDH10 Missense_Mutation p.S294L 0.43 deleterious(0.04) possibly_damaging(0.558) TCGA-AZ-4315-01 4 13606158 13606158 C T BOD1L1 Missense_Mutation p.R789Q 0.35 probably_damaging(0.951) TCGA-AZ-4315-01 4 138442251 138442251 C T PCDH18 Missense_Mutation p.E1114K 0.28 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 4 138452126 138452126 C T PCDH18 Missense_Mutation p.D373N 0.26 deleterious(0.01) benign(0.297) TCGA-AZ-4315-01 4 138452367 138452367 T G PCDH18 Missense_Mutation p.K292N 0.30 deleterious(0.01) possibly_damaging(0.551) TCGA-AZ-4315-01 4 140278677 140278677 G T NAA15 Nonsense_Mutation p.E409* 0.31 TCGA-AZ-4315-01 4 140282900 140282900 A G NAA15 Missense_Mutation p.D521G 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 4 140450270 140450270 A C SETD7 Missense_Mutation p.F159L 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 4 141300287 141300287 G T SCOC Missense_Mutation p.R65I 0.32 deleterious(0.01) benign(0.056) TCGA-AZ-4315-01 4 141321545 141321545 G T CLGN Missense_Mutation p.F220L 0.28 tolerated(0.22) benign(0.013) TCGA-AZ-4315-01 4 141321555 141321555 A C CLGN Missense_Mutation p.L217R 0.28 deleterious(0) probably_damaging(0.977) TCGA-AZ-4315-01 4 141483413 141483413 T C UCP1 Missense_Mutation p.Y248C 0.31 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 4 141483428 141483428 G T UCP1 Missense_Mutation p.S243Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 4 141484481 141484481 G T UCP1 Missense_Mutation p.L173I 0.10 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 4 141832470 141832470 G A RNF150 Silent p.F342F 0.28 TCGA-AZ-4315-01 4 141888889 141888889 G A RNF150 Missense_Mutation p.S208L 0.27 deleterious(0) possibly_damaging(0.889) TCGA-AZ-4315-01 4 144135694 144135694 T G USP38 Missense_Mutation p.S855R 0.38 deleterious(0) probably_damaging(0.959) TCGA-AZ-4315-01 4 144336797 144336797 A C GAB1 Missense_Mutation p.E80D 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 4 144354859 144354859 G A GAB1 Missense_Mutation p.E195K 0.40 deleterious(0.04) possibly_damaging(0.754) TCGA-AZ-4315-01 4 144459962 144459962 A C SMARCA5 Missense_Mutation p.E547D 0.33 tolerated(0.11) benign(0.016) TCGA-AZ-4315-01 4 144801574 144801574 T C GYPE Silent p.S42S 0.21 TCGA-AZ-4315-01 4 145040890 145040890 C A GYPA Nonsense_Mutation p.E61* 0.20 TCGA-AZ-4315-01 4 145567924 145567924 G A HHIP Missense_Mutation p.G33R 0.40 deleterious_low_confidence(0) benign(0.362) TCGA-AZ-4315-01 4 145636516 145636516 G A HHIP Missense_Mutation p.G538S 0.28 deleterious(0.02) benign(0.038) TCGA-AZ-4315-01 4 145916352 145916352 G T ANAPC10 3'UTR 0.44 TCGA-AZ-4315-01 4 146058570 146058570 C T OTUD4 3'UTR 0.30 TCGA-AZ-4315-01 4 146058661 146058661 C T OTUD4 Missense_Mutation p.R1024Q 0.36 deleterious(0.01) unknown(0) TCGA-AZ-4315-01 4 146071829 146071829 C A OTUD4 Missense_Mutation p.K300N 0.31 deleterious(0) possibly_damaging(0.768) TCGA-AZ-4315-01 4 146576305 146576305 C T MMAA Missense_Mutation p.R326C 0.30 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 4 148406796 148406796 A C EDNRA 5'UTR 0.35 TCGA-AZ-4315-01 4 149358013 149358013 C T NR3C2 Intron 0.23 TCGA-AZ-4315-01 4 151114305 151114305 G T DCLK2 Missense_Mutation p.D258Y 0.36 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 4 151153558 151153558 G A DCLK2 Missense_Mutation p.E474K 0.41 deleterious(0.01) possibly_damaging(0.742) TCGA-AZ-4315-01 4 151765920 151765920 C T LRBA Missense_Mutation p.A1451T 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-AZ-4315-01 4 151773136 151773136 C T LRBA Silent p.A1242A 0.28 TCGA-AZ-4315-01 4 151773408 151773408 C T LRBA Missense_Mutation p.D1152N 0.28 tolerated_low_confidence(0.27) benign(0) TCGA-AZ-4315-01 4 152096743 152096743 C T SH3D19 5'UTR 0.44 TCGA-AZ-4315-01 4 152577430 152577430 G T FAM160A1 Missense_Mutation p.E866D 0.31 tolerated(0.06) probably_damaging(0.996) TCGA-AZ-4315-01 4 153332524 153332524 C T FBXW7 Silent p.T144T 0.30 TCGA-AZ-4315-01 4 153332957 153332957 T G FBXW7 5'UTR 0.40 TCGA-AZ-4315-01 4 153831273 153831273 G A ARFIP1 Missense_Mutation p.A342T 0.32 tolerated(0.1) benign(0.029) TCGA-AZ-4315-01 4 153881906 153881906 C T FHDC1 Missense_Mutation p.R254W 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 4 153889242 153889242 T G FHDC1 Missense_Mutation p.F404C 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 4 154197268 154197268 A C TRIM2 Missense_Mutation p.N147H 0.54 deleterious(0.01) probably_damaging(0.957) TCGA-AZ-4315-01 4 154276805 154276805 G T MND1 Splice_Site p.X24_splice 0.31 TCGA-AZ-4315-01 4 154318411 154318411 G A MND1 Missense_Mutation p.R131Q 0.31 tolerated(0.55) benign(0.015) TCGA-AZ-4315-01 4 154479417 154479417 G A KIAA0922 Missense_Mutation p.G186E 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 4 154625500 154625500 G T TLR2 Nonsense_Mutation p.E481* 0.33 TCGA-AZ-4315-01 4 154625753 154625753 A G TLR2 Missense_Mutation p.D565G 0.40 deleterious(0) possibly_damaging(0.881) TCGA-AZ-4315-01 4 154626282 154626283 - A TLR2 Frame_Shift_Ins p.A744Sfs*47 0.16 TCGA-AZ-4315-01 4 154626551 154626551 A C TLR2 3'UTR 0.44 TCGA-AZ-4315-01 4 154709559 154709559 G A SFRP2 Silent p.D143D 0.41 TCGA-AZ-4315-01 4 154709562 154709562 G A SFRP2 Silent p.C142C 0.43 TCGA-AZ-4315-01 4 155155691 155155691 T C DCHS2 Missense_Mutation p.I2916M 0.34 deleterious(0) possibly_damaging(0.642) TCGA-AZ-4315-01 4 155161781 155161781 A C DCHS2 Missense_Mutation p.S1968A 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 4 155244399 155244399 G T DCHS2 Intron 0.31 TCGA-AZ-4315-01 4 155253652 155253652 G T DCHS2 Missense_Mutation p.F737L 0.36 deleterious(0.02) possibly_damaging(0.49) TCGA-AZ-4315-01 4 155264649 155264649 A G DCHS2 Missense_Mutation p.V317A 0.21 tolerated(0.47) benign(0) TCGA-AZ-4315-01 4 155312402 155312402 C A DCHS2 Missense_Mutation p.K16N 0.37 tolerated_low_confidence(0.1) benign(0.005) TCGA-AZ-4315-01 4 155407634 155407634 T G DCHS2 Missense_Mutation p.Q697H 0.37 tolerated_low_confidence(0.19) benign(0.005) TCGA-AZ-4315-01 4 155410590 155410590 C A DCHS2 Nonsense_Mutation p.E640* 0.32 TCGA-AZ-4315-01 4 155412027 155412027 T G DCHS2 Missense_Mutation p.N161H 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 4 155425 155425 G A ZNF718 RNA 0.24 TCGA-AZ-4315-01 4 155439 155439 A G ZNF718 RNA 0.26 TCGA-AZ-4315-01 4 155461791 155461791 C T PLRG1 Silent p.P298P 0.29 TCGA-AZ-4315-01 4 155491656 155491656 G A FGB Missense_Mutation p.G444S 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 4 155491981 155491981 C A FGB 3'UTR 0.50 TCGA-AZ-4315-01 4 155525437 155525437 T C FGG 3'Flank 0.26 TCGA-AZ-4315-01 4 155548 155548 A C ZNF718 RNA 0.26 TCGA-AZ-4315-01 4 15570918 15570918 C T CC2D2A Missense_Mutation p.A1134V 0.36 tolerated(0.09) benign(0.413) TCGA-AZ-4315-01 4 155720061 155720061 G A RBM46 Silent p.E249E 0.28 TCGA-AZ-4315-01 4 15589443 15589443 T G CC2D2A Missense_Mutation p.F1357C 0.22 tolerated(0.13) possibly_damaging(0.844) TCGA-AZ-4315-01 4 156135548 156135548 G A NPY2R Missense_Mutation p.V153I 0.21 tolerated(0.35) benign(0.333) TCGA-AZ-4315-01 4 156135751 156135751 T C NPY2R Silent p.S220S 0.38 TCGA-AZ-4315-01 4 156136568 156136568 G T NPY2R 3'UTR 0.38 TCGA-AZ-4315-01 4 156136791 156136791 C T NPY2R 3'UTR 0.31 TCGA-AZ-4315-01 4 156137344 156137344 C T NPY2R 3'UTR 0.31 TCGA-AZ-4315-01 4 156297015 156297015 C A MAP9 5'UTR 0.30 TCGA-AZ-4315-01 4 156631929 156631929 C A GUCY1A3 Nonsense_Mutation p.Y204* 0.39 TCGA-AZ-4315-01 4 156680196 156680196 C T GUCY1B3 5'Flank 0.31 TCGA-AZ-4315-01 4 156680242 156680242 C T GUCY1B3 5'UTR 0.32 TCGA-AZ-4315-01 4 156716530 156716530 C T GUCY1B3 Missense_Mutation p.S255L 0.30 tolerated(0.25) benign(0.005) TCGA-AZ-4315-01 4 156725859 156725859 G T GUCY1B3 Nonsense_Mutation p.G557* 0.28 TCGA-AZ-4315-01 4 156826288 156826288 C A TDO2 Missense_Mutation p.L71I 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 4 158142863 158142863 C T GRIA2 Nonsense_Mutation p.R45* 0.35 TCGA-AZ-4315-01 4 158256990 158256990 G A GRIA2 Silent p.T478T 0.30 TCGA-AZ-4315-01 4 158284179 158284179 G A GRIA2 Missense_Mutation p.E879K 0.31 deleterious_low_confidence(0.01) benign(0.288) TCGA-AZ-4315-01 4 15850417 15850417 C A CD38 3'UTR 0.57 TCGA-AZ-4315-01 4 159573241 159573241 C A RXFP1 3'UTR 0.28 TCGA-AZ-4315-01 4 159825879 159825879 A G FNIP2 3'UTR 0.42 TCGA-AZ-4315-01 4 160251128 160251128 G A RAPGEF2 Missense_Mutation p.R262Q 0.28 deleterious(0.01) possibly_damaging(0.895) TCGA-AZ-4315-01 4 160251635 160251635 G A RAPGEF2 Silent p.P323P 0.28 TCGA-AZ-4315-01 4 160264339 160264339 G A RAPGEF2 Missense_Mutation p.E882K 0.38 tolerated(0.06) probably_damaging(0.966) TCGA-AZ-4315-01 4 16168327 16168327 G A TAPT1 Missense_Mutation p.S468L 0.35 tolerated(0.32) benign(0) TCGA-AZ-4315-01 4 164434009 164434009 T C TMA16 Missense_Mutation p.V51A 0.26 deleterious(0.04) benign(0.021) TCGA-AZ-4315-01 4 165878135 165878135 G A FAM218A 5'UTR 0.55 TCGA-AZ-4315-01 4 165878784 165878784 C T FAM218A 3'UTR 0.24 TCGA-AZ-4315-01 4 165962176 165962176 C T TRIM60 Nonsense_Mutation p.R318* 0.32 TCGA-AZ-4315-01 4 166263024 166263024 C T MSMO1 Nonsense_Mutation p.R270* 0.32 TCGA-AZ-4315-01 4 166924703 166924703 A C TLL1 Silent p.R265R 0.28 TCGA-AZ-4315-01 4 167022091 167022091 A T TLL1 3'UTR 0.28 TCGA-AZ-4315-01 4 169141863 169141863 T G DDX60 Missense_Mutation p.N1661T 0.40 tolerated(0.1) benign(0.015) TCGA-AZ-4315-01 4 169145502 169145502 G A DDX60 Silent p.L1572L 0.27 TCGA-AZ-4315-01 4 169197322 169197322 C T DDX60 Silent p.T663T 0.30 TCGA-AZ-4315-01 4 170428237 170428237 C T NEK1 Missense_Mutation p.R653Q 0.23 tolerated(0.08) benign(0.082) TCGA-AZ-4315-01 4 1730383 1730383 C T TACC3 Silent p.F418F 0.37 TCGA-AZ-4315-01 4 174219104 174219104 G T GALNT7 Intron 0.31 TCGA-AZ-4315-01 4 174448344 174448344 A G HAND2 3'UTR 0.29 TCGA-AZ-4315-01 4 175160150 175160150 C T FBXO8 Missense_Mutation p.S256N 0.38 tolerated(0.53) benign(0.056) TCGA-AZ-4315-01 4 175412964 175412964 A C HPGD 3'UTR 0.30 TCGA-AZ-4315-01 4 175439224 175439224 A C HPGD Silent p.T74T 0.36 TCGA-AZ-4315-01 4 175749975 175749975 T C GLRA3 5'UTR 0.26 TCGA-AZ-4315-01 4 175896955 175896955 G A ADAM29 Silent p.Q93Q 0.22 TCGA-AZ-4315-01 4 176573009 176573009 G T GPM6A Missense_Mutation p.L173I 0.21 tolerated(0.62) probably_damaging(0.998) TCGA-AZ-4315-01 4 176733176 176733176 T C GPM6A Intron 0.23 TCGA-AZ-4315-01 4 176733370 176733370 C A GPM6A Missense_Mutation p.E3D 0.23 tolerated_low_confidence(0.14) benign(0.014) TCGA-AZ-4315-01 4 177069292 177069292 G A WDR17 Missense_Mutation p.R592Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 4 177071034 177071034 A G WDR17 Silent p.L682L 0.14 TCGA-AZ-4315-01 4 177113911 177113911 C T SPATA4 Silent p.S185S 0.38 TCGA-AZ-4315-01 4 17814719 17814719 G A NCAPG Silent p.A165A 0.28 TCGA-AZ-4315-01 4 178257259 178257259 T G NEIL3 Intron 0.24 TCGA-AZ-4315-01 4 17844901 17844901 C T NCAPG Intron 0.25 TCGA-AZ-4315-01 4 17847280 17847280 A C NCAPG 3'Flank 0.29 TCGA-AZ-4315-01 4 178881964 178881964 A G LINC01098 5'UTR 0.40 TCGA-AZ-4315-01 4 1803228 1803228 G A FGFR3 Missense_Mutation p.E194K 0.31 tolerated(0.09) possibly_damaging(0.702) TCGA-AZ-4315-01 4 183063526 183063526 C T AC108142.1 RNA 0.32 TCGA-AZ-4315-01 4 183676246 183676246 C T TENM3 Nonsense_Mutation p.R1576* 0.09 TCGA-AZ-4315-01 4 183713901 183713901 C T TENM3 Nonsense_Mutation p.R2026* 0.41 TCGA-AZ-4315-01 4 183714059 183714059 G A TENM3 Silent p.T2078T 0.32 TCGA-AZ-4315-01 4 183815719 183815719 G A DCTD Missense_Mutation p.S106L 0.22 tolerated(0.18) benign(0.09) TCGA-AZ-4315-01 4 184186923 184186923 T C WWC2 Splice_Site p.X707_splice 0.29 TCGA-AZ-4315-01 4 184203884 184203884 C T WWC2 Missense_Mutation p.S903F 0.41 deleterious(0.01) possibly_damaging(0.617) TCGA-AZ-4315-01 4 184240787 184240787 A C CLDN22 Silent p.A195A 0.34 TCGA-AZ-4315-01 4 184241477 184241477 C A CLDN22 5'UTR 0.33 TCGA-AZ-4315-01 4 184431941 184431941 G A ING2 Missense_Mutation p.G227R 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-4315-01 4 184605049 184605049 G A TRAPPC11 Intron 0.32 TCGA-AZ-4315-01 4 184931443 184931443 C T STOX2 Silent p.S484S 0.16 TCGA-AZ-4315-01 4 185350194 185350194 G A IRF2 Missense_Mutation p.R9C 0.67 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 4 185603419 185603419 G A PRIMPOL Missense_Mutation p.R342Q 0.31 benign(0.031) TCGA-AZ-4315-01 4 186231849 186231849 T C SNX25 Missense_Mutation p.I244T 0.17 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 4 186272732 186272732 G T SNX25 Missense_Mutation p.R648I 0.35 deleterious(0.01) benign(0.036) TCGA-AZ-4315-01 4 186295364 186295364 A G LRP2BP Silent p.N168N 0.30 TCGA-AZ-4315-01 4 186353192 186353192 G T C4orf47 Nonsense_Mutation p.E53* 0.36 TCGA-AZ-4315-01 4 186357254 186357254 C T C4orf47 Silent p.S125S 0.29 TCGA-AZ-4315-01 4 186427792 186427792 G A PDLIM3 Missense_Mutation p.S226L 0.20 tolerated(0.25) benign(0.001) TCGA-AZ-4315-01 4 186559309 186559309 C T SORBS2 Intron 0.47 TCGA-AZ-4315-01 4 186598516 186598516 C T SORBS2 Intron 0.30 TCGA-AZ-4315-01 4 187004021 187004021 G A TLR3 Missense_Mutation p.R394Q 0.29 tolerated(0.82) benign(0.001) TCGA-AZ-4315-01 4 187131791 187131791 G A CYP4V2 Missense_Mutation p.R525H 0.33 possibly_damaging(0.522) TCGA-AZ-4315-01 4 187209954 187209954 C T F11 3'Flank 0.40 TCGA-AZ-4315-01 4 187455522 187455522 C T MTNR1A Missense_Mutation p.R125H 0.35 deleterious(0.04) probably_damaging(0.978) TCGA-AZ-4315-01 4 187455635 187455635 C T MTNR1A Silent p.S87S 0.24 TCGA-AZ-4315-01 4 187542745 187542745 C T FAT1 Silent p.P1665P 0.26 TCGA-AZ-4315-01 4 187542840 187542840 C A FAT1 Missense_Mutation p.D1634Y 0.09 possibly_damaging(0.905) TCGA-AZ-4315-01 4 187549502 187549502 A G FAT1 Missense_Mutation p.V1539A 0.38 possibly_damaging(0.887) TCGA-AZ-4315-01 4 188924165 188924165 C T ZFP42 Silent p.F68F 0.29 TCGA-AZ-4315-01 4 1980443 1980443 C T WHSC1 Missense_Mutation p.S1302L 0.29 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 4 20525769 20525769 A G SLIT2 Silent p.G469G 0.33 TCGA-AZ-4315-01 4 20620554 20620554 C T SLIT2 Silent p.F1504F 0.39 TCGA-AZ-4315-01 4 2200385 2200385 G A POLN Silent p.G258G 0.35 TCGA-AZ-4315-01 4 2230780 2230780 A G HAUS3 3'UTR 0.36 TCGA-AZ-4315-01 4 22437052 22437052 C T GPR125 Missense_Mutation p.R442Q 0.28 tolerated(0.4) benign(0.022) TCGA-AZ-4315-01 4 2272469 2272469 C T ZFYVE28 Missense_Mutation p.D883N 0.33 deleterious_low_confidence(0.04) probably_damaging(0.97) TCGA-AZ-4315-01 4 22820613 22820613 C A GBA3 3'UTR 0.23 TCGA-AZ-4315-01 4 247607 247607 A G ZNF876P RNA 0.38 TCGA-AZ-4315-01 4 24854761 24854761 T G CCDC149 Missense_Mutation p.N102T 0.31 tolerated(0.05) benign(0.106) TCGA-AZ-4315-01 4 25005708 25005708 C T LGI2 Missense_Mutation p.D335N 0.39 deleterious(0.02) benign(0.016) TCGA-AZ-4315-01 4 25014122 25014122 C T LGI2 Splice_Site p.X219_splice 0.36 TCGA-AZ-4315-01 4 2515645 2515645 C T RNF4 3'UTR 0.33 TCGA-AZ-4315-01 4 25678234 25678234 G A SLC34A2 Missense_Mutation p.E646K 0.35 tolerated(0.61) benign(0.003) TCGA-AZ-4315-01 4 25759190 25759190 G A SEL1L3 Silent p.I1075I 0.30 TCGA-AZ-4315-01 4 25769442 25769442 A C SEL1L3 Missense_Mutation p.L894V 0.27 tolerated(0.06) possibly_damaging(0.541) TCGA-AZ-4315-01 4 265347 265347 C A ZNF732 Silent p.L433L 0.40 TCGA-AZ-4315-01 4 265837 265837 C A ZNF732 Missense_Mutation p.R270I 0.31 tolerated(0.47) possibly_damaging(0.905) TCGA-AZ-4315-01 4 266039 266039 C T ZNF732 Missense_Mutation p.D203N 0.27 deleterious(0) possibly_damaging(0.562) TCGA-AZ-4315-01 4 266135 266135 C A ZNF732 Nonsense_Mutation p.E171* 0.35 TCGA-AZ-4315-01 4 26622281 26622281 G T TBC1D19 Nonsense_Mutation p.E89* 0.36 TCGA-AZ-4315-01 4 26661278 26661278 T A TBC1D19 Silent p.T180T 0.37 TCGA-AZ-4315-01 4 27009185 27009185 G T STIM2 Nonsense_Mutation p.E338* 0.30 TCGA-AZ-4315-01 4 27019558 27019558 G A STIM2 Missense_Mutation p.R580Q 0.35 tolerated_low_confidence(0.09) probably_damaging(0.99) TCGA-AZ-4315-01 4 27024296 27024296 C T STIM2 Missense_Mutation p.S648L 0.30 deleterious_low_confidence(0) benign(0.263) TCGA-AZ-4315-01 4 2959400 2959400 A C NOP14 Missense_Mutation p.F88C 0.32 deleterious(0) probably_damaging(0.981) TCGA-AZ-4315-01 4 3021526 3021526 G A GRK4 Silent p.L300L 0.37 TCGA-AZ-4315-01 4 30723575 30723575 C T PCDH7 Silent p.I177I 0.42 TCGA-AZ-4315-01 4 30724085 30724085 C T PCDH7 Silent p.F347F 0.23 TCGA-AZ-4315-01 4 30725041 30725041 C T PCDH7 Missense_Mutation p.A666V 0.30 tolerated(0.08) benign(0.139) TCGA-AZ-4315-01 4 31144139 31144139 C T PCDH7 Missense_Mutation p.R1146C 0.29 deleterious(0) probably_damaging(0.939) TCGA-AZ-4315-01 4 3176695 3176695 G A HTT Missense_Mutation p.R1423H 0.33 probably_damaging(0.999) TCGA-AZ-4315-01 4 3319471 3319471 G A RGS12 Missense_Mutation p.G525D 0.43 deleterious(0.05) benign(0.118) TCGA-AZ-4315-01 4 3451130 3451130 T G HGFAC Missense_Mutation p.L651R 0.35 tolerated_low_confidence(0.07) benign(0.05) TCGA-AZ-4315-01 4 36075441 36075441 T G ARAP2 Missense_Mutation p.E1538A 0.33 tolerated(0.34) benign(0.062) TCGA-AZ-4315-01 4 36085010 36085010 C A ARAP2 Missense_Mutation p.K1496N 0.21 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 4 36118685 36118685 G A ARAP2 Missense_Mutation p.R1346W 0.30 deleterious(0) probably_damaging(0.965) TCGA-AZ-4315-01 4 36230520 36230520 C A ARAP2 Nonsense_Mutation p.E197* 0.38 TCGA-AZ-4315-01 4 36310007 36310007 G A DTHD1 Missense_Mutation p.D538N 0.31 tolerated(1) benign(0) TCGA-AZ-4315-01 4 367134 367134 G A ZNF141 Missense_Mutation p.R303Q 0.34 tolerated(0.12) benign(0.086) TCGA-AZ-4315-01 4 37445704 37445704 C A KIAA1239 Missense_Mutation p.S698R 0.12 tolerated(0.39) benign(0.004) TCGA-AZ-4315-01 4 37446508 37446508 T G KIAA1239 Missense_Mutation p.S966R 0.14 tolerated(0.06) possibly_damaging(0.885) TCGA-AZ-4315-01 4 37448130 37448130 G T KIAA1239 Missense_Mutation p.S1507I 0.31 deleterious(0.01) possibly_damaging(0.731) TCGA-AZ-4315-01 4 38029418 38029418 C A TBC1D1 Missense_Mutation p.S407Y 0.35 deleterious(0) possibly_damaging(0.73) TCGA-AZ-4315-01 4 38029426 38029426 A G TBC1D1 Missense_Mutation p.T410A 0.34 tolerated(0.92) benign(0.075) TCGA-AZ-4315-01 4 38051474 38051474 T G TBC1D1 Missense_Mutation p.L622R 0.44 deleterious(0.01) probably_damaging(0.964) TCGA-AZ-4315-01 4 38691487 38691487 G A KLF3 Missense_Mutation p.A228T 0.43 tolerated(0.65) benign(0.013) TCGA-AZ-4315-01 4 38777271 38777271 A G TLR10 Intron 0.23 TCGA-AZ-4315-01 4 38798405 38798405 A G TLR1 Missense_Mutation p.I683T 0.24 deleterious(0.03) probably_damaging(1) TCGA-AZ-4315-01 4 38800442 38800442 A G TLR1 Missense_Mutation p.I4T 0.35 tolerated(0.05) benign(0.008) TCGA-AZ-4315-01 4 38830218 38830218 G A TLR6 Missense_Mutation p.R293C 0.38 deleterious(0.01) benign(0.339) TCGA-AZ-4315-01 4 39000342 39000342 A G TMEM156 Silent p.G92G 0.36 TCGA-AZ-4315-01 4 39064089 39064089 C A KLHL5 5'UTR 0.35 TCGA-AZ-4315-01 4 39290455 39290455 T G RFC1 Missense_Mutation p.K1125Q 0.30 deleterious(0.03) benign(0.008) TCGA-AZ-4315-01 4 39318590 39318590 C T RFC1 Missense_Mutation p.R383Q 0.39 tolerated(0.32) benign(0.032) TCGA-AZ-4315-01 4 39448066 39448066 G A KLB Missense_Mutation p.A574T 0.46 tolerated(0.23) benign(0.079) TCGA-AZ-4315-01 4 39868615 39868615 T C PDS5A Silent p.V836V 0.21 TCGA-AZ-4315-01 4 40122652 40122652 C T N4BP2 Missense_Mutation p.S974L 0.28 deleterious(0.05) benign(0.32) TCGA-AZ-4315-01 4 40245040 40245040 G A RHOH Missense_Mutation p.D12N 0.29 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 4 40245060 40245060 C A RHOH Silent p.T18T 0.27 TCGA-AZ-4315-01 4 41694357 41694357 G A LIMCH1 Missense_Mutation p.R1061Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 4 4190685 4190685 C T OTOP1 Missense_Mutation p.A562T 0.31 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 4 419584 419584 G A ABCA11P RNA 0.39 TCGA-AZ-4315-01 4 42024887 42024887 G A SLC30A9 Missense_Mutation p.R156Q 0.31 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 4 42127616 42127616 G T BEND4 Missense_Mutation p.A377D 0.24 tolerated_low_confidence(0.31) benign(0.067) TCGA-AZ-4315-01 4 42145984 42145984 G A BEND4 Missense_Mutation p.A172V 0.38 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-AZ-4315-01 4 4283603 4283603 G A LYAR Silent p.H48H 0.34 TCGA-AZ-4315-01 4 436069 436069 A C ZNF721 Missense_Mutation p.D729E 0.36 tolerated(1) benign(0.002) TCGA-AZ-4315-01 4 436610 436610 C T ZNF721 Missense_Mutation p.R549K 0.32 tolerated(0.12) possibly_damaging(0.565) TCGA-AZ-4315-01 4 437702 437702 C A ZNF721 Missense_Mutation p.R185I 0.35 tolerated(0.13) possibly_damaging(0.53) TCGA-AZ-4315-01 4 46042956 46042956 C A GABRG1 3'UTR 0.28 TCGA-AZ-4315-01 4 46060564 46060564 C A GABRG1 Missense_Mutation p.R234I 0.27 deleterious(0) possibly_damaging(0.87) TCGA-AZ-4315-01 4 46099233 46099233 G A GABRG1 Missense_Mutation p.R80C 0.26 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 4 46307611 46307611 C T GABRA2 Missense_Mutation p.G226E 0.34 deleterious(0.02) benign(0.16) TCGA-AZ-4315-01 4 46334647 46334647 G A GABRA2 Silent p.V80V 0.34 TCGA-AZ-4315-01 4 46930150 46930150 T G GABRA4 3'UTR 0.36 TCGA-AZ-4315-01 4 47163450 47163450 G A GABRB1 Missense_Mutation p.R142Q 0.40 tolerated(0.08) probably_damaging(0.957) TCGA-AZ-4315-01 4 47538736 47538736 G A ATP10D Missense_Mutation p.E393K 0.44 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 4 47682260 47682260 G A CORIN Missense_Mutation p.P344S 0.22 tolerated(0.4) benign(0.013) TCGA-AZ-4315-01 4 47765403 47765403 C T CORIN Missense_Mutation p.D204N 0.33 tolerated(0.1) possibly_damaging(0.624) TCGA-AZ-4315-01 4 47939273 47939273 C A CNGA1 Missense_Mutation p.R482I 0.38 deleterious(0) probably_damaging(0.937) TCGA-AZ-4315-01 4 48140993 48140993 G A TEC Missense_Mutation p.P528S 0.24 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 4 48490770 48490770 G A SLC10A4 Silent p.G376G 0.40 TCGA-AZ-4315-01 4 48608583 48608583 C A FRYL Nonsense_Mutation p.E205* 0.29 TCGA-AZ-4315-01 4 48853980 48853980 C G OCIAD1 Missense_Mutation p.H179D 0.25 tolerated(0.46) benign(0.013) TCGA-AZ-4315-01 4 48988668 48988668 G A CWH43 Intron 0.44 TCGA-AZ-4315-01 4 52890120 52890120 C A SGCB 3'UTR 0.32 TCGA-AZ-4315-01 4 52926991 52926991 G A SPATA18 Silent p.L79L 0.18 TCGA-AZ-4315-01 4 52928496 52928496 C T SPATA18 Silent p.D140D 0.29 TCGA-AZ-4315-01 4 54265985 54265985 A C FIP1L1 Missense_Mutation p.K265T 0.21 deleterious(0.01) possibly_damaging(0.573) TCGA-AZ-4315-01 4 54362536 54362536 A G LNX1 Missense_Mutation p.V335A 0.33 deleterious(0) possibly_damaging(0.896) TCGA-AZ-4315-01 4 54968019 54968019 C T GSX2 Missense_Mutation p.A282V 0.26 tolerated(0.25) benign(0.041) TCGA-AZ-4315-01 4 55155254 55155254 G T PDGFRA Missense_Mutation p.E951D 0.36 tolerated(0.53) benign(0.007) TCGA-AZ-4315-01 4 55589830 55589830 A C KIT Missense_Mutation p.I438L 0.34 deleterious(0) benign(0.371) TCGA-AZ-4315-01 4 5564624 5564624 T G EVC2 Missense_Mutation p.K1293T 0.35 deleterious(0) probably_damaging(0.949) TCGA-AZ-4315-01 4 5570310 5570310 G A EVC2 Missense_Mutation p.R1140C 0.40 tolerated(0.05) benign(0.01) TCGA-AZ-4315-01 4 55955593 55955593 G A KDR Nonsense_Mutation p.R1118* 0.29 TCGA-AZ-4315-01 4 55956224 55956224 C T KDR Missense_Mutation p.A1031T 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 4 55964942 55964942 G T KDR Silent p.I765I 0.24 TCGA-AZ-4315-01 4 55968610 55968610 C T KDR Missense_Mutation p.E685K 0.33 tolerated(0.05) benign(0.228) TCGA-AZ-4315-01 4 55991480 55991480 G A KDR 5'UTR 0.28 TCGA-AZ-4315-01 4 56348963 56348963 G A CLOCK 5'UTR 0.37 TCGA-AZ-4315-01 4 56744174 56744174 C T EXOC1 Missense_Mutation p.A389V 0.29 tolerated(0.2) benign(0.078) TCGA-AZ-4315-01 4 56756404 56756404 C T EXOC1 Missense_Mutation p.S464L 0.26 deleterious(0.02) benign(0.122) TCGA-AZ-4315-01 4 56768600 56768600 C T EXOC1 Missense_Mutation p.R810C 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 4 56840968 56840968 C T CEP135 Nonsense_Mutation p.R436* 0.28 TCGA-AZ-4315-01 4 5696101 5696101 C T EVC2 Silent p.K137K 0.27 TCGA-AZ-4315-01 4 57209809 57209809 G T AASDH Silent p.V898V 0.34 TCGA-AZ-4315-01 4 57220263 57220263 C T AASDH Missense_Mutation p.R442Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 4 57273813 57273813 T C PPAT Intron 0.20 TCGA-AZ-4315-01 4 5735139 5735139 G A EVC Missense_Mutation p.A227T 0.29 tolerated(0.1) possibly_damaging(0.529) TCGA-AZ-4315-01 4 5749976 5749976 G A EVC Silent p.T347T 0.27 TCGA-AZ-4315-01 4 57516972 57516972 C A HOPX Missense_Mutation p.D69Y 0.25 tolerated_low_confidence(0.89) benign(0) TCGA-AZ-4315-01 4 57676185 57676185 A C SPINK2 3'UTR 0.32 TCGA-AZ-4315-01 4 57676322 57676322 G A SPINK2 Nonsense_Mutation p.R80* 0.38 TCGA-AZ-4315-01 4 57777549 57777549 A G REST Missense_Mutation p.K249E 0.34 deleterious(0) probably_damaging(0.936) TCGA-AZ-4315-01 4 5785317 5785317 C T EVC Silent p.F534F 0.30 TCGA-AZ-4315-01 4 57888376 57888376 G T POLR2B Nonsense_Mutation p.E827* 0.27 TCGA-AZ-4315-01 4 5830355 5830355 C T CRMP1 Missense_Mutation p.G555D 0.34 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 4 62383102 62383102 G A LPHN3 Intron 0.30 TCGA-AZ-4315-01 4 62542542 62542542 A G LPHN3 Splice_Site p.X90_splice 0.27 TCGA-AZ-4315-01 4 62596344 62596344 G T LPHN3 Silent p.V128V 0.22 TCGA-AZ-4315-01 4 62845477 62845477 G A LPHN3 Missense_Mutation p.R933Q 0.32 tolerated(0.47) benign(0.31) TCGA-AZ-4315-01 4 62936142 62936142 C T LPHN3 Missense_Mutation p.S1309L 0.33 tolerated_low_confidence(0.28) benign(0.244) TCGA-AZ-4315-01 4 62936365 62936365 G A LPHN3 Silent p.P1383P 0.27 TCGA-AZ-4315-01 4 6293706 6293706 C T WFS1 Missense_Mutation p.R232C 0.33 deleterious(0.03) benign(0.035) TCGA-AZ-4315-01 4 65145741 65145741 T G TECRL 3'UTR 0.35 TCGA-AZ-4315-01 4 65274978 65274978 C A TECRL Missense_Mutation p.R31I 0.44 deleterious_low_confidence(0) possibly_damaging(0.589) TCGA-AZ-4315-01 4 6612992 6612992 C T MAN2B2 Silent p.F850F 0.50 TCGA-AZ-4315-01 4 661751 661751 C T PDE6B Missense_Mutation p.A820V 0.34 tolerated(0.33) benign(0.009) TCGA-AZ-4315-01 4 66280031 66280031 C T EPHA5 Missense_Mutation p.R553Q 0.34 tolerated(1) benign(0.003) TCGA-AZ-4315-01 4 6719032 6719032 T G BLOC1S4 3'UTR 0.33 TCGA-AZ-4315-01 4 68693137 68693137 T G TMPRSS11D Missense_Mutation p.K265T 0.31 tolerated(0.34) benign(0.002) TCGA-AZ-4315-01 4 69056940 69056940 T A TMPRSS11BNL 3'UTR 0.25 TCGA-AZ-4315-01 4 69188582 69188582 C A YTHDC1 Nonsense_Mutation p.E496* 0.25 TCGA-AZ-4315-01 4 69535656 69535656 A C UGT2B15 Missense_Mutation p.I227M 0.30 tolerated(0.31) benign(0.016) TCGA-AZ-4315-01 4 69696746 69696746 T C UGT2B10 3'UTR 0.25 TCGA-AZ-4315-01 4 69796394 69796394 G A UGT2A3 Missense_Mutation p.P392S 0.23 deleterious(0) possibly_damaging(0.763) TCGA-AZ-4315-01 4 70346308 70346308 G T UGT2B4 3'UTR 0.32 TCGA-AZ-4315-01 4 70810689 70810689 A T CSN1S1 Missense_Mutation p.N175I 0.29 deleterious(0) probably_damaging(0.955) TCGA-AZ-4315-01 4 70823249 70823249 G T CSN2 Missense_Mutation p.H140N 0.32 tolerated(0.09) possibly_damaging(0.728) TCGA-AZ-4315-01 4 70823463 70823463 G A CSN2 Silent p.F68F 0.35 TCGA-AZ-4315-01 4 70921236 70921236 G T HTN1 Nonsense_Mutation p.E42* 0.27 TCGA-AZ-4315-01 4 71062257 71062257 G A ODAM 5'UTR 0.33 TCGA-AZ-4315-01 4 71275212 71275212 G T PROL1 Missense_Mutation p.R56I 0.40 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-AZ-4315-01 4 71346904 71346904 G C MUC7 Missense_Mutation p.S148T 0.33 tolerated(0.23) benign(0.261) TCGA-AZ-4315-01 4 71346907 71346907 C A MUC7 Missense_Mutation p.S149Y 0.35 deleterious(0.02) probably_damaging(0.955) TCGA-AZ-4315-01 4 71508344 71508344 C A ENAM Missense_Mutation p.L401I 0.26 tolerated(0.2) benign(0.03) TCGA-AZ-4315-01 4 71556235 71556235 A C UTP3 3'UTR 0.25 TCGA-AZ-4315-01 4 71657200 71657200 C T RUFY3 Intron 0.35 TCGA-AZ-4315-01 4 71891606 71891606 T G DCK Missense_Mutation p.L208R 0.26 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 4 71895203 71895203 C T DCK 3'UTR 0.29 TCGA-AZ-4315-01 4 72412180 72412180 C T SLC4A4 Silent p.I852I 0.30 TCGA-AZ-4315-01 4 72433696 72433696 C T SLC4A4 3'UTR 0.33 TCGA-AZ-4315-01 4 73149004 73149004 A G ADAMTS3 Missense_Mutation p.V1156A 0.35 tolerated_low_confidence(0.8) benign(0) TCGA-AZ-4315-01 4 73175141 73175141 T C ADAMTS3 Missense_Mutation p.T718A 0.22 deleterious(0) possibly_damaging(0.61) TCGA-AZ-4315-01 4 73179510 73179510 C T ADAMTS3 Silent p.K543K 0.18 TCGA-AZ-4315-01 4 73188757 73188757 G A ADAMTS3 Missense_Mutation p.R307C 0.39 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 4 73923641 73923641 G A COX18 3'UTR 0.42 TCGA-AZ-4315-01 4 73963984 73963984 G A ANKRD17 Silent p.S1609S 0.28 TCGA-AZ-4315-01 4 74005649 74005649 C A ANKRD17 Missense_Mutation p.R895I 0.30 benign(0.396) TCGA-AZ-4315-01 4 74318320 74318320 C T AFP Missense_Mutation p.A544V 0.30 tolerated(0.21) benign(0.223) TCGA-AZ-4315-01 4 74852815 74852815 C A PPBP 3'UTR 0.25 TCGA-AZ-4315-01 4 74863741 74863741 T G CXCL5 Missense_Mutation p.K105T 0.23 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 4 75167482 75167482 C T MTHFD2L Missense_Mutation p.L334F 0.35 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 4 75178986 75178986 T G EPGN Intron 0.46 TCGA-AZ-4315-01 4 76720859 76720859 C A USO1 Missense_Mutation p.L522I 0.25 deleterious(0.03) possibly_damaging(0.723) TCGA-AZ-4315-01 4 76785646 76785646 C T PPEF2 Missense_Mutation p.R652Q 0.40 deleterious(0.03) benign(0.067) TCGA-AZ-4315-01 4 76881282 76881282 C T SDAD1 Missense_Mutation p.D474N 0.25 tolerated(0.06) possibly_damaging(0.876) TCGA-AZ-4315-01 4 76881297 76881297 C A SDAD1 Nonsense_Mutation p.E469* 0.25 TCGA-AZ-4315-01 4 76943548 76943548 C A CXCL10 Missense_Mutation p.K83N 0.41 deleterious(0.03) benign(0.393) TCGA-AZ-4315-01 4 76943561 76943561 G A CXCL10 Missense_Mutation p.S79L 0.31 tolerated(0.1) benign(0.212) TCGA-AZ-4315-01 4 76955955 76955955 C A CXCL11 Missense_Mutation p.K92N 0.27 tolerated(0.1) benign(0.074) TCGA-AZ-4315-01 4 77082873 77082873 C T SCARB2 Missense_Mutation p.R477Q 0.36 deleterious(0.04) probably_damaging(0.982) TCGA-AZ-4315-01 4 77272905 77272905 G A CCDC158 Missense_Mutation p.R836C 0.27 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 4 77274338 77274338 G T CCDC158 Missense_Mutation p.L795M 0.23 tolerated(0.18) probably_damaging(0.994) TCGA-AZ-4315-01 4 7770587 7770587 A G AFAP1 Missense_Mutation p.V801A 0.39 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 4 77816251 77816251 G A SOWAHB 3'UTR 0.62 TCGA-AZ-4315-01 4 77940363 77940363 A C SEPT11 Missense_Mutation p.I245L 0.31 tolerated(0.06) benign(0.044) TCGA-AZ-4315-01 4 79301048 79301048 C A FRAS1 Nonsense_Mutation p.S1154* 0.32 TCGA-AZ-4315-01 4 79308716 79308716 T C FRAS1 Missense_Mutation p.F1279S 0.22 probably_damaging(0.944) TCGA-AZ-4315-01 4 79369426 79369426 A G FRAS1 Missense_Mutation p.D2077G 0.32 benign(0) TCGA-AZ-4315-01 4 79516998 79516998 C A ANXA3 Missense_Mutation p.F197L 0.28 deleterious(0.01) possibly_damaging(0.758) TCGA-AZ-4315-01 4 79525440 79525440 A G ANXA3 Missense_Mutation p.T267A 0.34 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 4 79531275 79531275 G A ANXA3 3'UTR 0.23 TCGA-AZ-4315-01 4 8007083 8007083 G T ABLIM2 Intron 0.11 TCGA-AZ-4315-01 4 8037938 8037938 C T ABLIM2 Missense_Mutation p.D329N 0.31 deleterious(0.01) possibly_damaging(0.764) TCGA-AZ-4315-01 4 81188318 81188318 G A FGF5 Missense_Mutation p.E114K 0.19 deleterious(0.03) possibly_damaging(0.488) TCGA-AZ-4315-01 4 82065388 82065388 C T PRKG2 Silent p.A417A 0.34 TCGA-AZ-4315-01 4 8228987 8228987 G A SH3TC1 Silent p.A522A 0.29 TCGA-AZ-4315-01 4 83347253 83347253 G A HNRNPDL Nonsense_Mutation p.R408* 0.30 TCGA-AZ-4315-01 4 83411212 83411212 A G TMEM150C Splice_Site p.X181_splice 0.12 TCGA-AZ-4315-01 4 8401376 8401376 G A ACOX3 Silent p.F260F 0.23 TCGA-AZ-4315-01 4 84227368 84227368 G A HPSE Silent p.F398F 0.25 TCGA-AZ-4315-01 4 84230053 84230053 A G HPSE Missense_Mutation p.S346P 0.24 tolerated(0.14) benign(0.397) TCGA-AZ-4315-01 4 84342852 84342852 G A HELQ Missense_Mutation p.S938F 0.27 deleterious(0.04) possibly_damaging(0.862) TCGA-AZ-4315-01 4 84348790 84348790 G T HELQ Missense_Mutation p.H868N 0.30 deleterious(0) probably_damaging(0.964) TCGA-AZ-4315-01 4 84382361 84382361 G A MRPS18C 3'UTR 0.32 TCGA-AZ-4315-01 4 84390196 84390196 T C FAM175A Silent p.V195V 0.33 TCGA-AZ-4315-01 4 85614146 85614146 G A WDFY3 Nonsense_Mutation p.R2981* 0.21 TCGA-AZ-4315-01 4 8605862 8605862 G A CPZ Missense_Mutation p.G219D 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-AZ-4315-01 4 86852067 86852067 A C ARHGAP24 Intron 0.37 TCGA-AZ-4315-01 4 87622722 87622722 T C PTPN13 Silent p.Y321Y 0.34 TCGA-AZ-4315-01 4 87692449 87692449 C T PTPN13 Silent p.C1648C 0.40 TCGA-AZ-4315-01 4 87693963 87693963 C A PTPN13 Missense_Mutation p.P1739H 0.30 deleterious(0.01) possibly_damaging(0.754) TCGA-AZ-4315-01 4 87705646 87705646 C T PTPN13 Missense_Mutation p.S2023L 0.32 tolerated(0.39) benign(0.002) TCGA-AZ-4315-01 4 87724989 87724989 A C PTPN13 Silent p.G2216G 0.38 TCGA-AZ-4315-01 4 87728798 87728798 C T PTPN13 Silent p.F2282F 0.22 TCGA-AZ-4315-01 4 87744979 87744979 C T SLC10A6 Silent p.T332T 0.33 TCGA-AZ-4315-01 4 87754456 87754456 G A SLC10A6 Intron 0.25 TCGA-AZ-4315-01 4 87797502 87797502 C T RP11-397E7.2 RNA 0.38 TCGA-AZ-4315-01 4 88238286 88238286 C A HSD17B13 Missense_Mutation p.E136D 0.19 tolerated(0.34) benign(0.02) TCGA-AZ-4315-01 4 88411517 88411517 G A SPARCL1 Missense_Mutation p.A480V 0.34 tolerated(0.28) benign(0.208) TCGA-AZ-4315-01 4 88415412 88415412 T C SPARCL1 Silent p.K180K 0.32 TCGA-AZ-4315-01 4 88534230 88534230 A C DSPP Missense_Mutation p.N298H 0.37 probably_damaging(0.994) TCGA-AZ-4315-01 4 88535442 88535442 G T DSPP Missense_Mutation p.G543V 0.25 unknown(0) TCGA-AZ-4315-01 4 88537367 88537367 G A DSPP Missense_Mutation p.D1185N 0.37 unknown(0) TCGA-AZ-4315-01 4 88583555 88583555 G A DMP1 Missense_Mutation p.E209K 0.32 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 4 88583675 88583675 G A DMP1 Missense_Mutation p.A249T 0.41 tolerated(0.32) benign(0.1) TCGA-AZ-4315-01 4 88732604 88732604 G A IBSP Missense_Mutation p.E166K 0.25 tolerated(0.07) benign(0.326) TCGA-AZ-4315-01 4 88766592 88766592 C T MEPE Missense_Mutation p.S191L 0.24 tolerated(0.82) benign(0.041) TCGA-AZ-4315-01 4 88766986 88766986 A G MEPE Silent p.E322E 0.42 TCGA-AZ-4315-01 4 887731 887731 G A GAK Nonsense_Mutation p.R270* 0.15 TCGA-AZ-4315-01 4 88903990 88903990 A C SPP1 Missense_Mutation p.K296T 0.30 tolerated(0.12) probably_damaging(0.932) TCGA-AZ-4315-01 4 89199445 89199445 G A PPM1K Silent p.C97C 0.34 TCGA-AZ-4315-01 4 89349841 89349841 T C HERC6 Missense_Mutation p.V682A 0.32 deleterious(0) possibly_damaging(0.556) TCGA-AZ-4315-01 4 89407337 89407337 T A HERC5 Missense_Mutation p.F603L 0.24 deleterious(0.05) probably_damaging(0.985) TCGA-AZ-4315-01 4 89442934 89442934 G T PIGY Missense_Mutation p.L3M 0.11 deleterious(0.05) benign(0.093) TCGA-AZ-4315-01 4 89653325 89653325 C T FAM13A Missense_Mutation p.D891N 0.31 tolerated(0.06) possibly_damaging(0.851) TCGA-AZ-4315-01 4 90035717 90035717 T C TIGD2 3'UTR 0.32 TCGA-AZ-4315-01 4 90857587 90857587 C T MMRN1 Missense_Mutation p.S919L 0.35 tolerated(1) benign(0) TCGA-AZ-4315-01 4 93225756 93225756 A G GRID2 5'UTR 0.33 TCGA-AZ-4315-01 4 94138228 94138228 C A GRID2 Intron 0.56 TCGA-AZ-4315-01 4 94750476 94750476 C T ATOH1 Silent p.G133G 0.42 TCGA-AZ-4315-01 4 94750604 94750604 A G ATOH1 Missense_Mutation p.N176S 0.35 deleterious(0) probably_damaging(0.989) TCGA-AZ-4315-01 4 95199848 95199848 C A SMARCAD1 Missense_Mutation p.L754I 0.23 deleterious(0.01) benign(0.372) TCGA-AZ-4315-01 4 95210718 95210718 A C SMARCAD1 3'UTR 0.35 TCGA-AZ-4315-01 4 95229818 95229818 A G HPGDS Silent p.C101C 0.38 TCGA-AZ-4315-01 4 95561565 95561565 G A PDLIM5 Missense_Mutation p.R445Q 0.35 deleterious(0) probably_damaging(0.946) TCGA-AZ-4315-01 4 99325723 99325723 T G RAP1GDS1 Missense_Mutation p.F246V 0.38 deleterious(0.02) benign(0.237) TCGA-AZ-4315-01 4 99397375 99397375 C T TSPAN5 Missense_Mutation p.V236I 0.30 tolerated(0.19) possibly_damaging(0.529) TCGA-AZ-4315-01 4 995592 995592 C T IDUA Missense_Mutation p.R239C 0.33 tolerated(0.12) possibly_damaging(0.791) TCGA-AZ-4315-01 5 100191967 100191967 G T ST8SIA4 Missense_Mutation p.H213N 0.32 benign(0.015) TCGA-AZ-4315-01 5 100191997 100191997 G A ST8SIA4 Nonsense_Mutation p.R203* 0.33 TCGA-AZ-4315-01 5 101572518 101572518 G A SLCO4C1 3'UTR 0.29 TCGA-AZ-4315-01 5 101575031 101575031 A G SLCO4C1 Silent p.D646D 0.33 TCGA-AZ-4315-01 5 101774330 101774330 T C SLCO6A1 Missense_Mutation p.T423A 0.25 tolerated(0.45) benign(0.01) TCGA-AZ-4315-01 5 102484929 102484929 G A PPIP5K2 Missense_Mutation p.R273Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 5 102502905 102502905 C A PPIP5K2 Missense_Mutation p.S648Y 0.30 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 5 102612428 102612428 A G C5orf30 3'UTR 0.25 TCGA-AZ-4315-01 5 10265141 10265141 C T CCT5 3'UTR 0.33 TCGA-AZ-4315-01 5 10378902 10378902 G T MARCH6 Nonsense_Mutation p.E50* 0.34 TCGA-AZ-4315-01 5 10411528 10411528 G A MARCH6 Missense_Mutation p.R592Q 0.31 tolerated(0.54) benign(0.001) TCGA-AZ-4315-01 5 10748312 10748312 C T DAP Missense_Mutation p.D43N 0.32 deleterious(0.01) possibly_damaging(0.747) TCGA-AZ-4315-01 5 107684204 107684204 C A FBXL17 Missense_Mutation p.D468Y 0.25 tolerated(0.21) benign(0.281) TCGA-AZ-4315-01 5 108523217 108523217 C T FER Missense_Mutation p.R804C 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 109120629 109120629 T C MAN2A1 Splice_Site p.X587_splice 0.31 TCGA-AZ-4315-01 5 109124646 109124646 C T MAN2A1 Missense_Mutation p.S591L 0.33 deleterious(0) possibly_damaging(0.808) TCGA-AZ-4315-01 5 109178068 109178068 A G MAN2A1 Missense_Mutation p.D869G 0.25 deleterious(0.01) possibly_damaging(0.886) TCGA-AZ-4315-01 5 110096995 110096995 G A SLC25A46 Missense_Mutation p.R257Q 0.35 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 5 110407676 110407676 G A TSLP Missense_Mutation p.D30N 0.27 tolerated(1) benign(0.009) TCGA-AZ-4315-01 5 110439611 110439611 C T WDR36 Missense_Mutation p.R298C 0.27 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 5 110462743 110462743 C T WDR36 3'UTR 0.12 TCGA-AZ-4315-01 5 110835511 110835511 T C STARD4 3'UTR 0.33 TCGA-AZ-4315-01 5 11117664 11117664 G A CTNND2 Silent p.A725A 0.35 TCGA-AZ-4315-01 5 111504472 111504472 C T EPB41L4A Silent p.S632S 0.45 TCGA-AZ-4315-01 5 111541195 111541195 C T EPB41L4A Silent p.K395K 0.35 TCGA-AZ-4315-01 5 112170676 112170676 C T APC Missense_Mutation p.A591V 0.38 possibly_damaging(0.826) TCGA-AZ-4315-01 5 112174872 112174872 C A APC Nonsense_Mutation p.S1194* 0.37 TCGA-AZ-4315-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.21 TCGA-AZ-4315-01 5 112178000 112178000 C T APC Nonsense_Mutation p.R2237* 0.26 TCGA-AZ-4315-01 5 112178211 112178211 C T APC Missense_Mutation p.S2307L 0.23 possibly_damaging(0.498) TCGA-AZ-4315-01 5 112238144 112238144 A C REEP5 Missense_Mutation p.V95G 0.29 deleterious(0.03) probably_damaging(0.945) TCGA-AZ-4315-01 5 112321634 112321634 G A DCP2 Silent p.Q52Q 0.33 TCGA-AZ-4315-01 5 112343634 112343634 G T DCP2 Splice_Site p.X315_splice 0.38 TCGA-AZ-4315-01 5 112363006 112363006 G A MCC Missense_Mutation p.S1018L 0.37 deleterious(0.01) benign(0.173) TCGA-AZ-4315-01 5 112420867 112420867 G A MCC Silent p.I513I 0.29 TCGA-AZ-4315-01 5 112878146 112878146 G T YTHDC2 Missense_Mutation p.D481Y 0.26 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 5 114462134 114462134 C T TRIM36 3'UTR 0.46 TCGA-AZ-4315-01 5 114513564 114513564 T G TRIM36 Intron 0.30 TCGA-AZ-4315-01 5 114860605 114860605 G A FEM1C Silent p.S418S 0.38 TCGA-AZ-4315-01 5 114952082 114952082 G T TMED7-TICAM2 Missense_Mutation p.H167N 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AZ-4315-01 5 115152019 115152019 C T CDO1 Missense_Mutation p.D26N 0.25 tolerated(0.21) benign(0.004) TCGA-AZ-4315-01 5 115320303 115320303 G T AQPEP Missense_Mutation p.W292L 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 115346227 115346227 A G AQPEP Intron 0.33 TCGA-AZ-4315-01 5 115782315 115782315 A G SEMA6A Silent p.C1029C 0.30 TCGA-AZ-4315-01 5 115803297 115803297 T G SEMA6A Missense_Mutation p.N626H 0.38 tolerated(0.14) benign(0.332) TCGA-AZ-4315-01 5 11732297 11732297 C T CTNND2 Missense_Mutation p.G42D 0.28 tolerated(0.19) possibly_damaging(0.709) TCGA-AZ-4315-01 5 118264348 118264348 C T DTWD2 Missense_Mutation p.E161K 0.22 tolerated(0.05) benign(0.048) TCGA-AZ-4315-01 5 118264384 118264384 A G DTWD2 Silent p.L149L 0.35 TCGA-AZ-4315-01 5 118469808 118469808 C A DMXL1 Missense_Mutation p.S730Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 118485123 118485123 C T DMXL1 Nonsense_Mutation p.R1201* 0.25 TCGA-AZ-4315-01 5 1201729 1201729 C T SLC6A19 5'UTR 0.33 TCGA-AZ-4315-01 5 121356373 121356373 C A SRFBP1 Missense_Mutation p.L315I 0.32 tolerated(0.36) benign(0.087) TCGA-AZ-4315-01 5 121402320 121402320 C A LOX 3'UTR 0.29 TCGA-AZ-4315-01 5 1216992 1216992 G A SLC6A19 Missense_Mutation p.A369T 0.38 tolerated(0.26) benign(0.015) TCGA-AZ-4315-01 5 122272489 122272489 G A SNX24 Missense_Mutation p.E41K 0.30 deleterious(0) possibly_damaging(0.682) TCGA-AZ-4315-01 5 122343481 122343481 C T SNX24 3'UTR 0.33 TCGA-AZ-4315-01 5 122893225 122893225 G A CSNK1G3 Missense_Mutation p.E86K 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 1244447 1244447 T G SLC6A18 Missense_Mutation p.F485L 0.27 tolerated(0.42) benign(0.075) TCGA-AZ-4315-01 5 126140577 126140577 A C LMNB1 Missense_Mutation p.K157Q 0.39 tolerated(0.08) benign(0.042) TCGA-AZ-4315-01 5 126147508 126147508 T C LMNB1 Missense_Mutation p.V286A 0.30 tolerated(1) benign(0.001) TCGA-AZ-4315-01 5 126154840 126154840 G A LMNB1 Intron 0.30 TCGA-AZ-4315-01 5 126993499 126993499 C T CTXN3 3'UTR 0.33 TCGA-AZ-4315-01 5 127497382 127497382 T C SLC12A2 Missense_Mutation p.S836P 0.38 tolerated(0.14) benign(0.303) TCGA-AZ-4315-01 5 127623093 127623093 G T FBN2 Missense_Mutation p.L2263M 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 5 127625625 127625625 A C FBN2 Missense_Mutation p.L2154V 0.32 deleterious(0.03) probably_damaging(0.96) TCGA-AZ-4315-01 5 127681271 127681271 G A FBN2 Missense_Mutation p.R999C 0.35 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 5 127873278 127873278 G A FBN2 Silent p.L7L 0.46 TCGA-AZ-4315-01 5 128301972 128301972 G A SLC27A6 Missense_Mutation p.E48K 0.28 tolerated(1) benign(0) TCGA-AZ-4315-01 5 128302123 128302123 A G SLC27A6 Missense_Mutation p.N98S 0.33 tolerated(0.83) benign(0.006) TCGA-AZ-4315-01 5 128364057 128364057 G A SLC27A6 Missense_Mutation p.A492T 0.20 deleterious(0.01) possibly_damaging(0.844) TCGA-AZ-4315-01 5 128365321 128365321 C A SLC27A6 Missense_Mutation p.S535Y 0.28 deleterious(0.01) benign(0.211) TCGA-AZ-4315-01 5 128864231 128864231 C T ADAMTS19 Missense_Mutation p.H391Y 0.31 deleterious(0) possibly_damaging(0.854) TCGA-AZ-4315-01 5 128983514 128983514 A T ADAMTS19 Silent p.G637G 0.33 TCGA-AZ-4315-01 5 128983576 128983576 G A ADAMTS19 Missense_Mutation p.R658H 0.39 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 5 128994338 128994338 C A ADAMTS19 Missense_Mutation p.S772Y 0.28 deleterious(0) probably_damaging(0.99) TCGA-AZ-4315-01 5 129520229 129520229 A C CHSY3 Missense_Mutation p.E465A 0.32 tolerated(0.09) benign(0.401) TCGA-AZ-4315-01 5 130987568 130987568 A G FNIP1 Missense_Mutation p.L1078S 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 131008243 131008243 C T FNIP1 Missense_Mutation p.D632N 0.30 tolerated_low_confidence(0.31) benign(0.004) TCGA-AZ-4315-01 5 131014836 131014836 C T FNIP1 Missense_Mutation p.R412Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 5 131039890 131039890 C A FNIP1 Missense_Mutation p.K328N 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 131042146 131042146 C T FNIP1 Missense_Mutation p.R291H 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 5 131554256 131554256 C T P4HA2 Missense_Mutation p.E22K 0.28 deleterious(0.01) possibly_damaging(0.549) TCGA-AZ-4315-01 5 131995954 131995954 C T IL13 Missense_Mutation p.R141C 0.19 deleterious(0) probably_damaging(0.954) TCGA-AZ-4315-01 5 132070011 132070011 C A KIF3A Nonsense_Mutation p.E56* 0.34 TCGA-AZ-4315-01 5 132070129 132070129 C A KIF3A Missense_Mutation p.K16N 0.21 deleterious(0.01) possibly_damaging(0.821) TCGA-AZ-4315-01 5 132219192 132219192 A C AFF4 Missense_Mutation p.N1068K 0.38 tolerated(0.07) benign(0.077) TCGA-AZ-4315-01 5 132424191 132424191 G T HSPA4 Nonsense_Mutation p.E361* 0.31 TCGA-AZ-4315-01 5 132440089 132440089 G A HSPA4 Silent p.S828S 0.40 TCGA-AZ-4315-01 5 132585166 132585166 C A FSTL4 Missense_Mutation p.R277M 0.33 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 5 133479303 133479303 G A TCF7 Silent p.S349S 0.43 TCGA-AZ-4315-01 5 133643921 133643921 G A CDKL3 Silent p.C424C 0.37 TCGA-AZ-4315-01 5 133738598 133738598 C T CDKN2AIPNL 3'UTR 0.19 TCGA-AZ-4315-01 5 134077146 134077146 G A CAMLG Missense_Mutation p.R189Q 0.25 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-AZ-4315-01 5 134086512 134086512 G A CAMLG Missense_Mutation p.E255K 0.37 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 5 134102708 134102708 G A DDX46 Missense_Mutation p.R103Q 0.15 tolerated(0.09) unknown(0) TCGA-AZ-4315-01 5 134785391 134785391 C T TIFAB Missense_Mutation p.R80H 0.39 tolerated(0.18) benign(0.039) TCGA-AZ-4315-01 5 135276973 135276973 C T FBXL21 RNA 0.34 TCGA-AZ-4315-01 5 135288623 135288623 C A LECT2 Missense_Mutation p.G27V 0.21 deleterious(0) possibly_damaging(0.889) TCGA-AZ-4315-01 5 135388658 135388658 T C TGFBI Missense_Mutation p.S326P 0.23 tolerated(0.36) possibly_damaging(0.646) TCGA-AZ-4315-01 5 136328281 136328281 C A SPOCK1 Missense_Mutation p.D200Y 0.34 deleterious(0.02) possibly_damaging(0.905) TCGA-AZ-4315-01 5 136964097 136964097 C T KLHL3 Missense_Mutation p.A494T 0.35 deleterious(0.01) possibly_damaging(0.737) TCGA-AZ-4315-01 5 13719116 13719116 G A DNAH5 Missense_Mutation p.A4125V 0.37 benign(0) TCGA-AZ-4315-01 5 137206353 137206353 G A MYOT Missense_Mutation p.E5K 0.34 deleterious(0) possibly_damaging(0.866) TCGA-AZ-4315-01 5 13721312 13721312 C T DNAH5 Missense_Mutation p.E4026K 0.21 possibly_damaging(0.635) TCGA-AZ-4315-01 5 137230168 137230168 C T PKD2L2 Missense_Mutation p.R132C 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 137235267 137235267 G A PKD2L2 Missense_Mutation p.R196Q 0.35 tolerated(0.09) benign(0.009) TCGA-AZ-4315-01 5 137276053 137276053 A C PKD2L2 3'UTR 0.23 TCGA-AZ-4315-01 5 137475567 137475567 A G BRD8 3'UTR 0.60 TCGA-AZ-4315-01 5 137497518 137497518 T C BRD8 Missense_Mutation p.D739G 0.30 deleterious(0) probably_damaging(0.965) TCGA-AZ-4315-01 5 137771461 137771461 C T KDM3B 3'UTR 0.29 TCGA-AZ-4315-01 5 137780131 137780131 C T REEP2 Silent p.I70I 0.29 TCGA-AZ-4315-01 5 137891648 137891648 C T HSPA9 3'UTR 0.31 TCGA-AZ-4315-01 5 138117711 138117711 T C CTNNA1 Missense_Mutation p.V33A 0.29 deleterious(0) possibly_damaging(0.734) TCGA-AZ-4315-01 5 138119053 138119053 G A CTNNA1 Missense_Mutation p.R98Q 0.31 tolerated(0.22) benign(0.031) TCGA-AZ-4315-01 5 138221917 138221917 G T CTNNA1 Missense_Mutation p.R360I 0.45 tolerated(0.12) benign(0.125) TCGA-AZ-4315-01 5 138269708 138269708 G A CTNNA1 Missense_Mutation p.R884Q 0.33 deleterious(0.03) possibly_damaging(0.656) TCGA-AZ-4315-01 5 13830813 13830813 C T DNAH5 Missense_Mutation p.G1985D 0.25 probably_damaging(0.982) TCGA-AZ-4315-01 5 138728952 138728952 A C PROB1 Missense_Mutation p.L607V 0.36 tolerated_low_confidence(0.33) benign(0.02) TCGA-AZ-4315-01 5 138755822 138755822 G T DNAJC18 Missense_Mutation p.S291Y 0.42 deleterious(0.03) possibly_damaging(0.639) TCGA-AZ-4315-01 5 138760774 138760774 C A DNAJC18 Missense_Mutation p.D197Y 0.31 tolerated(1) benign(0.305) TCGA-AZ-4315-01 5 139244719 139244719 G A NRG2 Intron 0.32 TCGA-AZ-4315-01 5 139506998 139506998 G T IGIP 5'UTR 0.33 TCGA-AZ-4315-01 5 139680113 139680113 C T PFDN1 Missense_Mutation p.A30T 0.35 deleterious(0) possibly_damaging(0.846) TCGA-AZ-4315-01 5 139908956 139908956 C A ANKHD1 Missense_Mutation p.S2142Y 0.33 probably_damaging(0.93) TCGA-AZ-4315-01 5 139930671 139930671 C A SRA1 Missense_Mutation p.K158N 0.31 deleterious(0.04) benign(0.364) TCGA-AZ-4315-01 5 140012130 140012130 A C CD14 Missense_Mutation p.L147V 0.28 deleterious(0) possibly_damaging(0.812) TCGA-AZ-4315-01 5 140175117 140175117 G A PCDHA2 Missense_Mutation p.E190K 0.37 tolerated_low_confidence(1) benign(0) TCGA-AZ-4315-01 5 140176333 140176333 G A PCDHA2 Missense_Mutation p.R595H 0.26 tolerated_low_confidence(0.06) benign(0.214) TCGA-AZ-4315-01 5 140182530 140182530 G A PCDHA3 Missense_Mutation p.R583Q 0.32 tolerated_low_confidence(0.11) benign(0.441) TCGA-AZ-4315-01 5 140208784 140208784 G A PCDHA6 Missense_Mutation p.A370T 0.31 tolerated_low_confidence(0.09) possibly_damaging(0.731) TCGA-AZ-4315-01 5 140209591 140209591 G A PCDHA6 Missense_Mutation p.E639K 0.38 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-AZ-4315-01 5 140215844 140215844 C G PCDHA7 Missense_Mutation p.L626V 0.32 tolerated_low_confidence(0.06) benign(0.272) TCGA-AZ-4315-01 5 140221792 140221792 G A PCDHA8 Missense_Mutation p.D296N 0.31 tolerated_low_confidence(0.4) benign(0.012) TCGA-AZ-4315-01 5 140222061 140222061 G A PCDHA8 Silent p.V385V 0.24 TCGA-AZ-4315-01 5 140249366 140249366 T C PCDHA11 Silent p.V226V 0.35 TCGA-AZ-4315-01 5 140255616 140255616 G T PCDHA12 Missense_Mutation p.D187Y 0.17 deleterious_low_confidence(0.01) benign(0.1) TCGA-AZ-4315-01 5 140263752 140263752 G A PCDHA13 Silent p.T633T 0.38 TCGA-AZ-4315-01 5 140307836 140307836 C T PCDHAC1 Silent p.F453F 0.30 TCGA-AZ-4315-01 5 140347791 140347791 G A PCDHAC2 Silent p.E480E 0.38 TCGA-AZ-4315-01 5 140348084 140348084 A G PCDHAC2 Missense_Mutation p.H578R 0.33 tolerated(0.26) benign(0) TCGA-AZ-4315-01 5 140432001 140432001 G A PCDHB1 Missense_Mutation p.D316N 0.37 tolerated(0.19) probably_damaging(0.999) TCGA-AZ-4315-01 5 140432603 140432603 G A PCDHB1 Silent p.A516A 0.36 TCGA-AZ-4315-01 5 140515210 140515210 G A PCDHB5 Missense_Mutation p.R65Q 0.29 tolerated_low_confidence(0.22) benign(0.326) TCGA-AZ-4315-01 5 140515737 140515737 G A PCDHB5 Missense_Mutation p.E241K 0.36 deleterious_low_confidence(0.04) benign(0.01) TCGA-AZ-4315-01 5 140529724 140529724 A G PCDHB6 5'Flank 0.45 TCGA-AZ-4315-01 5 140530752 140530752 T C PCDHB6 Missense_Mutation p.L305S 0.41 deleterious(0) probably_damaging(0.94) TCGA-AZ-4315-01 5 140536906 140536906 G A PCDHB17 Missense_Mutation p.D444N 0.30 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AZ-4315-01 5 140537160 140537160 C T PCDHB17 Silent p.F528F 0.35 TCGA-AZ-4315-01 5 140552993 140552993 G A PCDHB7 Missense_Mutation p.E193K 0.30 deleterious_low_confidence(0.01) benign(0.112) TCGA-AZ-4315-01 5 140553330 140553330 C T PCDHB7 Missense_Mutation p.A305V 0.37 deleterious_low_confidence(0.04) benign(0.007) TCGA-AZ-4315-01 5 140553608 140553608 G A PCDHB7 Missense_Mutation p.E398K 0.30 tolerated_low_confidence(0.54) benign(0.003) TCGA-AZ-4315-01 5 140555011 140555011 T G PCDHB7 3'UTR 0.23 TCGA-AZ-4315-01 5 140555444 140555444 C A PCDHB7 3'UTR 0.32 TCGA-AZ-4315-01 5 140558500 140558500 C T PCDHB8 Silent p.V295V 0.35 TCGA-AZ-4315-01 5 140563061 140563061 C T PCDHB16 Silent p.F309F 0.30 TCGA-AZ-4315-01 5 140563208 140563208 G T PCDHB16 Missense_Mutation p.E358D 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 140565341 140565341 C A PCDHB16 3'UTR 0.35 TCGA-AZ-4315-01 5 140573440 140573440 G A PCDHB10 Missense_Mutation p.V439I 0.31 tolerated_low_confidence(0.07) benign(0.057) TCGA-AZ-4315-01 5 140581471 140581471 C T PCDHB11 Silent p.F708F 0.26 TCGA-AZ-4315-01 5 140590949 140590949 T G PCDHB12 3'UTR 0.29 TCGA-AZ-4315-01 5 140626473 140626473 G A PCDHB15 Missense_Mutation p.D443N 0.39 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-AZ-4315-01 5 140710726 140710726 G T PCDHGA1 Missense_Mutation p.D159Y 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-AZ-4315-01 5 140710845 140710845 T C PCDHGA1 Silent p.S198S 0.36 TCGA-AZ-4315-01 5 140711129 140711129 G A PCDHGA1 Missense_Mutation p.R293H 0.35 tolerated_low_confidence(0.36) benign(0.004) TCGA-AZ-4315-01 5 140711282 140711282 C T PCDHGA1 Missense_Mutation p.A344V 0.40 tolerated_low_confidence(0.2) benign(0.125) TCGA-AZ-4315-01 5 140718615 140718615 C T PCDHGA2 Missense_Mutation p.A26V 0.15 tolerated_low_confidence(0.13) benign(0.022) TCGA-AZ-4315-01 5 140720375 140720375 G A PCDHGA2 Missense_Mutation p.E613K 0.34 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-AZ-4315-01 5 140720677 140720677 G A PCDHGA2 Silent p.A713A 0.36 TCGA-AZ-4315-01 5 140725016 140725016 C A PCDHGA3 Missense_Mutation p.F472L 0.27 tolerated_low_confidence(0.08) benign(0.036) TCGA-AZ-4315-01 5 140737097 140737097 A G PCDHGA4 Missense_Mutation p.D777G 0.33 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-AZ-4315-01 5 140741819 140741819 C T PCDHGB2 Missense_Mutation p.A706V 0.30 tolerated(0.22) benign(0.048) TCGA-AZ-4315-01 5 140744004 140744004 C T PCDHGA5 Missense_Mutation p.P36L 0.29 tolerated_low_confidence(0.09) benign(0.072) TCGA-AZ-4315-01 5 140750238 140750238 G T PCDHGB3 Nonsense_Mutation p.E93* 0.32 TCGA-AZ-4315-01 5 140753998 140753998 T G PCDHGA6 Silent p.L116L 0.35 TCGA-AZ-4315-01 5 140754766 140754766 C T PCDHGA6 Silent p.F372F 0.30 TCGA-AZ-4315-01 5 140754821 140754821 C A PCDHGA6 Missense_Mutation p.P391T 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.841) TCGA-AZ-4315-01 5 140767850 140767850 C A PCDHGB4 Missense_Mutation p.F133L 0.27 deleterious(0.01) possibly_damaging(0.728) TCGA-AZ-4315-01 5 140768431 140768431 C T PCDHGB4 Missense_Mutation p.A327V 0.23 deleterious(0.04) possibly_damaging(0.842) TCGA-AZ-4315-01 5 140772474 140772474 C T PCDHGA8 Missense_Mutation p.R32C 0.38 deleterious_low_confidence(0.01) benign(0.445) TCGA-AZ-4315-01 5 140772869 140772869 C T PCDHGA8 Silent p.G163G 0.28 TCGA-AZ-4315-01 5 140773387 140773387 C T PCDHGA8 Missense_Mutation p.S336L 0.34 deleterious_low_confidence(0.01) benign(0.018) TCGA-AZ-4315-01 5 140782910 140782910 C A PCDHGA9 Missense_Mutation p.P131T 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AZ-4315-01 5 140794435 140794435 G A PCDHGA10 Missense_Mutation p.E565K 0.39 deleterious_low_confidence(0.02) benign(0.445) TCGA-AZ-4315-01 5 140794849 140794849 G A PCDHGA10 Missense_Mutation p.A703T 0.35 tolerated_low_confidence(0.17) benign(0.091) TCGA-AZ-4315-01 5 140795144 140795144 C T PCDHGA10 Missense_Mutation p.S801L 0.36 tolerated_low_confidence(0.19) benign(0.008) TCGA-AZ-4315-01 5 140802831 140802831 C T PCDHGA11 Silent p.L679L 0.31 TCGA-AZ-4315-01 5 140810715 140810715 C T PCDHGA12 Missense_Mutation p.A130V 0.22 deleterious_low_confidence(0.03) benign(0.395) TCGA-AZ-4315-01 5 140810903 140810903 G A PCDHGA12 Missense_Mutation p.E193K 0.32 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AZ-4315-01 5 140864884 140864884 C T PCDHGC4 Silent p.V48V 0.31 TCGA-AZ-4315-01 5 140890571 140890571 C T PCDHGB6 Missense_Mutation p.A875V 0.29 deleterious(0.01) possibly_damaging(0.476) TCGA-AZ-4315-01 5 140907242 140907242 C T DIAPH1 Silent p.K1057K 0.36 TCGA-AZ-4315-01 5 141035306 141035306 A G ARAP3 Missense_Mutation p.V1331A 0.35 tolerated(0.38) benign(0.297) TCGA-AZ-4315-01 5 141049360 141049360 C T ARAP3 Silent p.E756E 0.27 TCGA-AZ-4315-01 5 141324872 141324872 G T PCDH12 3'UTR 0.23 TCGA-AZ-4315-01 5 141974994 141974994 T G FGF1 Missense_Mutation p.N110T 0.32 deleterious(0.03) benign(0.092) TCGA-AZ-4315-01 5 142421389 142421389 G A ARHGAP26 Missense_Mutation p.E407K 0.30 tolerated(0.06) possibly_damaging(0.585) TCGA-AZ-4315-01 5 142658860 142658860 G A NR3C1 3'Flank 0.29 TCGA-AZ-4315-01 5 142658920 142658920 G A NR3C1 3'Flank 0.27 TCGA-AZ-4315-01 5 14270965 14270965 G A TRIO Missense_Mutation p.M63I 0.24 benign(0) TCGA-AZ-4315-01 5 14280432 14280432 T C TRIO Silent p.G78G 0.29 TCGA-AZ-4315-01 5 143586637 143586637 A C KCTD16 Missense_Mutation p.K120N 0.29 deleterious(0) possibly_damaging(0.812) TCGA-AZ-4315-01 5 14479450 14479450 C A TRIO Silent p.T2078T 0.32 TCGA-AZ-4315-01 5 145239334 145239334 C A GRXCR2 Nonsense_Mutation p.E237* 0.09 TCGA-AZ-4315-01 5 145393500 145393500 T C SH3RF2 Missense_Mutation p.V312A 0.32 deleterious(0.05) probably_damaging(0.997) TCGA-AZ-4315-01 5 145508320 145508320 T G LARS Missense_Mutation p.K932T 0.34 tolerated(0.11) benign(0.016) TCGA-AZ-4315-01 5 145613016 145613016 G T RBM27 Missense_Mutation p.R285I 0.36 deleterious(0) probably_damaging(0.945) TCGA-AZ-4315-01 5 145641216 145641216 G A RBM27 Silent p.P679P 0.37 TCGA-AZ-4315-01 5 145665663 145665663 G T RBM27 3'UTR 0.21 TCGA-AZ-4315-01 5 145719995 145719995 G A POU4F3 Silent p.S335S 0.51 TCGA-AZ-4315-01 5 145872582 145872582 G A TCERG1 Missense_Mutation p.E738K 0.28 deleterious(0.01) unknown(0) TCGA-AZ-4315-01 5 145878136 145878136 G T TCERG1 Missense_Mutation p.D757Y 0.24 deleterious(0) unknown(0) TCGA-AZ-4315-01 5 145894747 145894747 C T GPR151 Silent p.S310S 0.23 TCGA-AZ-4315-01 5 146435366 146435366 C A PPP2R2B 5'UTR 0.33 TCGA-AZ-4315-01 5 147051407 147051407 C T JAKMIP2 5'UTR 0.35 TCGA-AZ-4315-01 5 147718081 147718081 A G SPINK9 Missense_Mutation p.Q43R 0.28 tolerated(0.34) benign(0.001) TCGA-AZ-4315-01 5 147806802 147806802 C T FBXO38 Nonsense_Mutation p.R649* 0.31 TCGA-AZ-4315-01 5 147820773 147820773 C T FBXO38 Nonsense_Mutation p.R1046* 0.26 TCGA-AZ-4315-01 5 148417880 148417880 C A SH3TC2 Missense_Mutation p.D327Y 0.29 deleterious(0.02) possibly_damaging(0.707) TCGA-AZ-4315-01 5 148431769 148431769 C T SH3TC2 Silent p.S29S 0.34 TCGA-AZ-4315-01 5 148695422 148695422 C T AFAP1L1 Silent p.S353S 0.36 TCGA-AZ-4315-01 5 148756350 148756350 T C IL17B Missense_Mutation p.N87S 0.28 tolerated(0.07) benign(0.16) TCGA-AZ-4315-01 5 149425088 149425088 G A HMGXB3 Silent p.T930T 0.25 TCGA-AZ-4315-01 5 149439387 149439387 C T CSF1R Missense_Mutation p.D670N 0.14 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 149457738 149457738 G A CSF1R Silent p.I222I 0.34 TCGA-AZ-4315-01 5 149515171 149515171 T C PDGFRB Missense_Mutation p.D104G 0.37 tolerated(0.45) benign(0) TCGA-AZ-4315-01 5 149669200 149669200 G A CAMK2A 5'Flank 0.23 TCGA-AZ-4315-01 5 149912528 149912528 G A NDST1 Missense_Mutation p.E344K 0.37 tolerated(0.92) benign(0.004) TCGA-AZ-4315-01 5 150275872 150275872 A C ZNF300 Missense_Mutation p.F326C 0.34 tolerated(0.06) probably_damaging(0.957) TCGA-AZ-4315-01 5 150310871 150310871 G T ZNF300P1 RNA 0.14 TCGA-AZ-4315-01 5 150484825 150484825 T G ANXA6 Missense_Mutation p.K607T 0.33 tolerated(0.16) possibly_damaging(0.619) TCGA-AZ-4315-01 5 150527481 150527481 G A ANXA6 5'UTR 0.31 TCGA-AZ-4315-01 5 150562791 150562791 G T CCDC69 3'UTR 0.36 TCGA-AZ-4315-01 5 150656793 150656793 G T SLC36A3 3'Flank 0.38 TCGA-AZ-4315-01 5 150696383 150696383 G A SLC36A2 Missense_Mutation p.R483W 0.26 deleterious(0) benign(0.085) TCGA-AZ-4315-01 5 150885275 150885275 G A FAT2 Missense_Mutation p.R4301C 0.30 probably_damaging(1) TCGA-AZ-4315-01 5 150905419 150905419 G T FAT2 Silent p.G3472G 0.14 TCGA-AZ-4315-01 5 150907685 150907685 T C FAT2 Missense_Mutation p.T3346A 0.37 benign(0.02) TCGA-AZ-4315-01 5 150922789 150922789 G T FAT2 Silent p.V2633V 0.28 TCGA-AZ-4315-01 5 150924800 150924800 T C FAT2 Missense_Mutation p.D1963G 0.37 benign(0.001) TCGA-AZ-4315-01 5 150925630 150925630 G A FAT2 Silent p.S1686S 0.40 TCGA-AZ-4315-01 5 151173736 151173736 A C G3BP1 Missense_Mutation p.K123T 0.33 deleterious(0) possibly_damaging(0.525) TCGA-AZ-4315-01 5 151656 151656 T C PLEKHG4B Missense_Mutation p.I289T 0.30 deleterious(0.04) benign(0.135) TCGA-AZ-4315-01 5 151771682 151771682 G T NMUR2 3'UTR 0.40 TCGA-AZ-4315-01 5 151771733 151771733 G A NMUR2 3'UTR 0.28 TCGA-AZ-4315-01 5 151784073 151784073 G A NMUR2 Missense_Mutation p.S201L 0.44 deleterious(0.02) probably_damaging(0.928) TCGA-AZ-4315-01 5 153085319 153085319 C A GRIA1 Missense_Mutation p.F515L 0.27 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 5 153434972 153434972 A G MFAP3 3'UTR 0.38 TCGA-AZ-4315-01 5 154305554 154305554 G T GEMIN5 Missense_Mutation p.F387L 0.36 deleterious(0.02) possibly_damaging(0.867) TCGA-AZ-4315-01 5 154394313 154394313 A C KIF4B Missense_Mutation p.Q298H 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 154394357 154394357 T C KIF4B Missense_Mutation p.V313A 0.29 deleterious(0.03) probably_damaging(0.977) TCGA-AZ-4315-01 5 154394644 154394644 G A KIF4B Missense_Mutation p.A409T 0.35 deleterious(0.04) possibly_damaging(0.611) TCGA-AZ-4315-01 5 154396266 154396266 G A KIF4B Silent p.E949E 0.32 TCGA-AZ-4315-01 5 156280 156280 T C PLEKHG4B Missense_Mutation p.V412A 0.43 tolerated(0.05) possibly_damaging(0.888) TCGA-AZ-4315-01 5 156456656 156456656 C A HAVCR1 3'UTR 0.46 TCGA-AZ-4315-01 5 156522332 156522332 C T HAVCR2 Missense_Mutation p.A221T 0.29 deleterious(0.04) benign(0.015) TCGA-AZ-4315-01 5 156535937 156535937 T G HAVCR2 Silent p.R20R 0.23 TCGA-AZ-4315-01 5 156589366 156589366 C T FAM71B 3'UTR 0.39 TCGA-AZ-4315-01 5 156589801 156589801 C T FAM71B Missense_Mutation p.R492Q 0.32 tolerated(0.29) benign(0.123) TCGA-AZ-4315-01 5 156589884 156589884 C T FAM71B Silent p.A464A 0.30 TCGA-AZ-4315-01 5 156907873 156907873 A C ADAM19 3'UTR 0.35 TCGA-AZ-4315-01 5 158710265 158710265 G T UBLCP1 Nonsense_Mutation p.E283* 0.31 TCGA-AZ-4315-01 5 158747519 158747519 G A IL12B Silent p.D164D 0.43 TCGA-AZ-4315-01 5 15928463 15928463 C T FBXL7 Missense_Mutation p.R198W 0.32 deleterious(0.02) possibly_damaging(0.898) TCGA-AZ-4315-01 5 159520744 159520744 C T PWWP2A Missense_Mutation p.E305K 0.32 deleterious(0.03) possibly_damaging(0.867) TCGA-AZ-4315-01 5 159830353 159830353 T G SLU7 Missense_Mutation p.E567A 0.26 deleterious(0) possibly_damaging(0.853) TCGA-AZ-4315-01 5 161112685 161112685 A G GABRA6 5'UTR 0.29 TCGA-AZ-4315-01 5 162945299 162945299 G A MAT2B Missense_Mutation p.R312Q 0.28 tolerated(0.21) benign(0.056) TCGA-AZ-4315-01 5 16666778 16666778 G A MYO10 3'UTR 0.30 TCGA-AZ-4315-01 5 167303179 167303179 C T TENM2 Missense_Mutation p.P231S 0.36 tolerated_low_confidence(0.34) benign(0.026) TCGA-AZ-4315-01 5 167812322 167812322 G A WWC1 Silent p.E112E 0.31 TCGA-AZ-4315-01 5 169126398 169126398 G T DOCK2 Missense_Mutation p.E356D 0.48 tolerated(0.17) benign(0.082) TCGA-AZ-4315-01 5 169139122 169139122 A C DOCK2 Splice_Site p.X519_splice 0.23 TCGA-AZ-4315-01 5 169139143 169139143 G T DOCK2 Missense_Mutation p.K525N 0.37 deleterious(0) probably_damaging(0.914) TCGA-AZ-4315-01 5 169423113 169423113 A C DOCK2 Missense_Mutation p.K1006T 0.27 tolerated(0.4) benign(0.005) TCGA-AZ-4315-01 5 169494544 169494544 G T DOCK2 Nonsense_Mutation p.E1500* 0.28 TCGA-AZ-4315-01 5 169532985 169532985 G A FOXI1 Silent p.A8A 0.31 TCGA-AZ-4315-01 5 169931626 169931626 G A KCNIP1 Missense_Mutation p.R17Q 0.36 tolerated(0.18) benign(0.001) TCGA-AZ-4315-01 5 171484380 171484380 C A STK10 Silent p.R770R 0.24 TCGA-AZ-4315-01 5 173316602 173316602 G A CPEB4 5'UTR 0.27 TCGA-AZ-4315-01 5 173317561 173317561 G A CPEB4 Silent p.A275A 0.34 TCGA-AZ-4315-01 5 175111052 175111052 C T HRH2 Silent p.I272I 0.48 TCGA-AZ-4315-01 5 175307147 175307147 C A CPLX2 3'UTR 0.43 TCGA-AZ-4315-01 5 175772202 175772202 C T SIMC1 Silent p.S376S 0.30 TCGA-AZ-4315-01 5 176025935 176025935 G A GPRIN1 Missense_Mutation p.P301S 0.15 tolerated(1) benign(0) TCGA-AZ-4315-01 5 176309091 176309091 C A HK3 Silent p.R697R 0.40 TCGA-AZ-4315-01 5 176491546 176491546 G T ZNF346 Missense_Mutation p.Q277H 0.40 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-AZ-4315-01 5 176631233 176631233 C T NSD1 Silent p.F392F 0.30 TCGA-AZ-4315-01 5 176636719 176636719 G A NSD1 Missense_Mutation p.R440Q 0.27 tolerated_low_confidence(0.87) benign(0.003) TCGA-AZ-4315-01 5 176738764 176738764 C A MXD3 Missense_Mutation p.R23I 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 176910877 176910877 G A PDLIM7 Silent p.F426F 0.26 TCGA-AZ-4315-01 5 177638966 177638966 C T PHYKPL Missense_Mutation p.E437K 0.52 tolerated(0.18) benign(0.014) TCGA-AZ-4315-01 5 178156052 178156052 G A ZNF354A 5'UTR 0.21 TCGA-AZ-4315-01 5 178310826 178310826 G A ZNF354B Missense_Mutation p.R458Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 5 178310994 178310994 G T ZNF354B Missense_Mutation p.R514I 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 5 178311162 178311162 G T ZNF354B Missense_Mutation p.R570I 0.30 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 5 178359678 178359678 G A ZFP2 Missense_Mutation p.R455Q 0.29 tolerated(0.83) benign(0.013) TCGA-AZ-4315-01 5 178413589 178413589 C T GRM6 Missense_Mutation p.E556K 0.23 tolerated(1) benign(0.124) TCGA-AZ-4315-01 5 178505839 178505839 G T ZNF354C Nonsense_Mutation p.E136* 0.40 TCGA-AZ-4315-01 5 178505879 178505879 C T ZNF354C Missense_Mutation p.S149L 0.27 tolerated(0.26) benign(0.004) TCGA-AZ-4315-01 5 178506212 178506212 T C ZNF354C Missense_Mutation p.L260P 0.28 tolerated(0.06) probably_damaging(0.998) TCGA-AZ-4315-01 5 178506392 178506392 G T ZNF354C Missense_Mutation p.R320I 0.29 deleterious(0) possibly_damaging(0.734) TCGA-AZ-4315-01 5 178564801 178564801 C T ADAMTS2 Silent p.Q640Q 0.27 TCGA-AZ-4315-01 5 178579185 178579185 C A ADAMTS2 Missense_Mutation p.K529N 0.45 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 179016622 179016622 C T RUFY1 Nonsense_Mutation p.R368* 0.34 TCGA-AZ-4315-01 5 179137044 179137044 G T CANX Missense_Mutation p.K233N 0.42 deleterious(0) possibly_damaging(0.865) TCGA-AZ-4315-01 5 179326234 179326234 G A TBC1D9B Silent p.F101F 0.37 TCGA-AZ-4315-01 5 179440133 179440133 A G RNF130 Silent p.I207I 0.39 TCGA-AZ-4315-01 5 179743822 179743822 C T GFPT2 Missense_Mutation p.R365Q 0.30 tolerated(0.09) benign(0.017) TCGA-AZ-4315-01 5 179992866 179992866 G A CNOT6 Silent p.A202A 0.32 TCGA-AZ-4315-01 5 180218781 180218781 G A MGAT1 Silent p.F397F 0.29 TCGA-AZ-4315-01 5 180277314 180277314 T G ZFP62 Missense_Mutation p.K394T 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-AZ-4315-01 5 19571872 19571872 G A CDH18 Missense_Mutation p.R357C 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 19838992 19838992 C A CDH18 Missense_Mutation p.R35I 0.31 tolerated(0.06) benign(0.064) TCGA-AZ-4315-01 5 21817187 21817187 C A CDH12 Missense_Mutation p.R290I 0.27 deleterious(0.02) possibly_damaging(0.742) TCGA-AZ-4315-01 5 22143111 22143111 T C CDH12 Intron 0.39 TCGA-AZ-4315-01 5 23523446 23523446 A C PRDM9 Missense_Mutation p.K310T 0.35 tolerated(0.56) benign(0.003) TCGA-AZ-4315-01 5 24487972 24487972 G A CDH10 Missense_Mutation p.L723F 0.28 tolerated(0.1) benign(0.016) TCGA-AZ-4315-01 5 24498584 24498584 A C CDH10 Missense_Mutation p.L480V 0.31 deleterious(0.03) probably_damaging(0.982) TCGA-AZ-4315-01 5 26906161 26906161 C A CDH9 Missense_Mutation p.D240Y 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 2752865 2752865 A G C5orf38 Silent p.L110L 0.24 TCGA-AZ-4315-01 5 31267760 31267760 C A CDH6 Missense_Mutation p.F60L 0.27 tolerated(0.08) probably_damaging(0.981) TCGA-AZ-4315-01 5 31297496 31297496 T G CDH6 Missense_Mutation p.F208L 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-AZ-4315-01 5 32243692 32243692 T A MTMR12 Missense_Mutation p.E345D 0.34 tolerated(0.49) benign(0.005) TCGA-AZ-4315-01 5 32786546 32786546 G A NPR3 3'UTR 0.39 TCGA-AZ-4315-01 5 32791120 32791120 A C NPR3 3'UTR 0.24 TCGA-AZ-4315-01 5 33466980 33466980 G A TARS Missense_Mutation p.R671Q 0.30 tolerated(1) benign(0.006) TCGA-AZ-4315-01 5 33561136 33561136 C A ADAMTS12 Missense_Mutation p.S1374I 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 33561166 33561166 G T ADAMTS12 Missense_Mutation p.P1364H 0.50 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 33881412 33881412 C T ADAMTS12 Missense_Mutation p.D101N 0.36 tolerated(0.21) benign(0.038) TCGA-AZ-4315-01 5 33881432 33881432 C A ADAMTS12 Missense_Mutation p.R94I 0.30 deleterious(0.02) benign(0.038) TCGA-AZ-4315-01 5 34823596 34823596 A C RAI14 Missense_Mutation p.K553T 0.32 tolerated(0.13) possibly_damaging(0.76) TCGA-AZ-4315-01 5 34840821 34840821 C T TTC23L Silent p.I15I 0.33 TCGA-AZ-4315-01 5 34850317 34850317 C T TTC23L Nonsense_Mutation p.R95* 0.28 TCGA-AZ-4315-01 5 35659272 35659272 G A SPEF2 Missense_Mutation p.R377Q 0.37 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 5 35700764 35700764 G T SPEF2 Nonsense_Mutation p.E770* 0.32 TCGA-AZ-4315-01 5 35740074 35740074 A - SPEF2 Frame_Shift_Del p.N1040Tfs*10 0.26 TCGA-AZ-4315-01 5 35759761 35759761 G T SPEF2 Missense_Mutation p.R1187I 0.35 deleterious(0.05) benign(0.186) TCGA-AZ-4315-01 5 3600142 3600142 C A IRX1 Missense_Mutation p.S360R 0.36 deleterious(0.03) probably_damaging(0.944) TCGA-AZ-4315-01 5 36168445 36168445 G A SKP2 Silent p.S189S 0.48 TCGA-AZ-4315-01 5 36170475 36170475 G A SKP2 Missense_Mutation p.R234Q 0.37 tolerated(0.22) benign(0.252) TCGA-AZ-4315-01 5 36955643 36955643 G A NIPBL Missense_Mutation p.R45Q 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-AZ-4315-01 5 36995828 36995828 C T NIPBL Missense_Mutation p.R1076C 0.36 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-AZ-4315-01 5 37051929 37051929 C T NIPBL Missense_Mutation p.R2335W 0.28 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 5 37064109 37064109 C T NIPBL Intron 0.31 TCGA-AZ-4315-01 5 37165648 37165648 T C C5orf42 Missense_Mutation p.K2509R 0.33 tolerated(0.13) benign(0.02) TCGA-AZ-4315-01 5 37183205 37183205 C A C5orf42 Missense_Mutation p.R1693I 0.31 deleterious(0.04) benign(0.198) TCGA-AZ-4315-01 5 37184968 37184968 G T C5orf42 Missense_Mutation p.S1468Y 0.34 deleterious(0.02) possibly_damaging(0.904) TCGA-AZ-4315-01 5 37243198 37243198 A G C5orf42 Silent p.C198C 0.32 TCGA-AZ-4315-01 5 37333589 37333589 C A NUP155 Missense_Mutation p.K498N 0.12 deleterious(0.03) possibly_damaging(0.491) TCGA-AZ-4315-01 5 38350610 38350610 T C EGFLAM Missense_Mutation p.V100A 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.511) TCGA-AZ-4315-01 5 38406313 38406313 C T EGFLAM Silent p.D266D 0.32 TCGA-AZ-4315-01 5 38427128 38427128 C T EGFLAM Missense_Mutation p.P610S 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 38431313 38431313 G A EGFLAM Missense_Mutation p.E697K 0.30 tolerated(0.07) possibly_damaging(0.641) TCGA-AZ-4315-01 5 38435262 38435262 C T EGFLAM Silent p.C730C 0.29 TCGA-AZ-4315-01 5 38482185 38482185 G A LIFR Missense_Mutation p.R936C 0.34 deleterious(0.03) benign(0.001) TCGA-AZ-4315-01 5 38486002 38486002 T G LIFR Missense_Mutation p.S806R 0.26 tolerated(0.08) benign(0.232) TCGA-AZ-4315-01 5 38496692 38496692 T C LIFR Silent p.L559L 0.33 TCGA-AZ-4315-01 5 38502764 38502764 T G LIFR Missense_Mutation p.K525N 0.11 tolerated(0.44) benign(0.001) TCGA-AZ-4315-01 5 38502817 38502817 G A LIFR Missense_Mutation p.R508W 0.30 deleterious(0.02) benign(0.3) TCGA-AZ-4315-01 5 38502901 38502901 G A LIFR Missense_Mutation p.R480W 0.30 deleterious(0.03) probably_damaging(0.916) TCGA-AZ-4315-01 5 38924592 38924592 G T OSMR Missense_Mutation p.D647Y 0.34 deleterious(0.04) benign(0.02) TCGA-AZ-4315-01 5 38950137 38950137 C T RICTOR Silent p.T1271T 0.38 TCGA-AZ-4315-01 5 39202442 39202442 C A FYB Missense_Mutation p.E217D 0.25 tolerated(0.93) benign(0.001) TCGA-AZ-4315-01 5 39382903 39382903 C A DAB2 Missense_Mutation p.Q386H 0.14 tolerated(0.06) benign(0.03) TCGA-AZ-4315-01 5 40853483 40853483 T C CARD6 Silent p.G683G 0.37 TCGA-AZ-4315-01 5 40950023 40950023 G T C7 Nonsense_Mutation p.E334* 0.26 TCGA-AZ-4315-01 5 40964939 40964939 G T C7 Missense_Mutation p.D616Y 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-AZ-4315-01 5 41004969 41004969 G T MROH2B Silent p.I1306I 0.26 TCGA-AZ-4315-01 5 41313501 41313501 A C PLCXD3 3'UTR 0.33 TCGA-AZ-4315-01 5 41912217 41912217 G A C5orf51 Missense_Mutation p.R178Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 5 41917356 41917356 G A C5orf51 Silent p.T280T 0.35 TCGA-AZ-4315-01 5 42689086 42689086 G T GHR Missense_Mutation p.K77N 0.31 tolerated(0.13) benign(0.14) TCGA-AZ-4315-01 5 43040400 43040400 A G ANXA2R 5'UTR 0.33 TCGA-AZ-4315-01 5 43161871 43161871 C A ZNF131 Missense_Mutation p.L264I 0.31 tolerated(0.32) benign(0.294) TCGA-AZ-4315-01 5 43280822 43280822 G A NIM1K Silent p.S434S 0.17 TCGA-AZ-4315-01 5 434213 434213 C T AHRR Missense_Mutation p.P475L 0.29 tolerated(0.41) benign(0.002) TCGA-AZ-4315-01 5 442832 442832 C A C5orf55 Nonsense_Mutation p.E36* 0.38 TCGA-AZ-4315-01 5 44310604 44310604 G A FGF10 Silent p.I118I 0.29 TCGA-AZ-4315-01 5 44388624 44388624 G A FGF10 Missense_Mutation p.S54F 0.25 tolerated(0.08) benign(0.102) TCGA-AZ-4315-01 5 5186352 5186352 G A ADAMTS16 Silent p.T317T 0.17 TCGA-AZ-4315-01 5 5191833 5191833 C T ADAMTS16 Missense_Mutation p.R415C 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 5222982 5222982 T G ADAMTS16 Missense_Mutation p.I562M 0.24 tolerated(0.23) benign(0.007) TCGA-AZ-4315-01 5 5223098 5223098 C A ADAMTS16 Intron 0.42 TCGA-AZ-4315-01 5 5239326 5239326 C T ADAMTS16 Silent p.N739N 0.31 TCGA-AZ-4315-01 5 5239833 5239833 G T ADAMTS16 Missense_Mutation p.S773I 0.37 deleterious(0) probably_damaging(0.928) TCGA-AZ-4315-01 5 5239993 5239993 G T ADAMTS16 Missense_Mutation p.E826D 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 52779900 52779900 G T FST Missense_Mutation p.K166N 0.28 deleterious(0) possibly_damaging(0.868) TCGA-AZ-4315-01 5 5319682 5319682 C T ADAMTS16 3'UTR 0.50 TCGA-AZ-4315-01 5 5437217 5437217 G A KIAA0947 Silent p.K56K 0.46 TCGA-AZ-4315-01 5 54403975 54403975 A G GZMA Missense_Mutation p.N127S 0.33 deleterious(0.05) benign(0.076) TCGA-AZ-4315-01 5 54404139 54404139 C T GZMA Nonsense_Mutation p.R182* 0.34 TCGA-AZ-4315-01 5 54456202 54456202 C A GPX8 Missense_Mutation p.S61Y 0.35 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 5 54579346 54579346 T C DHX29 Silent p.R550R 0.34 TCGA-AZ-4315-01 5 54618224 54618224 C T SKIV2L2 Silent p.F68F 0.32 TCGA-AZ-4315-01 5 54710055 54710055 C T SKIV2L2 Missense_Mutation p.R933C 0.41 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 5 54830461 54830461 C A PPAP2A 5'UTR 0.28 TCGA-AZ-4315-01 5 54941675 54941675 A C SLC38A9 Missense_Mutation p.F370C 0.36 deleterious(0) probably_damaging(0.94) TCGA-AZ-4315-01 5 55112416 55112416 A C DDX4 3'UTR 0.42 TCGA-AZ-4315-01 5 55192243 55192243 C T IL31RA Missense_Mutation p.R280W 0.23 tolerated(0.24) benign(0.013) TCGA-AZ-4315-01 5 55212953 55212953 G A IL31RA 3'UTR 0.42 TCGA-AZ-4315-01 5 55237406 55237406 G A IL6ST Missense_Mutation p.S754L 0.35 deleterious(0) benign(0.081) TCGA-AZ-4315-01 5 55272113 55272113 C T IL6ST 5'UTR 0.28 TCGA-AZ-4315-01 5 55422835 55422835 G A ANKRD55 Silent p.I237I 0.30 TCGA-AZ-4315-01 5 55455693 55455693 C T ANKRD55 Silent p.S150S 0.41 TCGA-AZ-4315-01 5 56189359 56189359 T G MAP3K1 Missense_Mutation p.I1464S 0.25 deleterious(0) probably_damaging(0.925) TCGA-AZ-4315-01 5 56207071 56207071 A C SETD9 Missense_Mutation p.K58N 0.33 tolerated(0.1) benign(0.424) TCGA-AZ-4315-01 5 56545311 56545311 C T GPBP1 Missense_Mutation p.R301C 0.34 tolerated(0.11) benign(0.034) TCGA-AZ-4315-01 5 57791687 57791687 G T GAPT 3'UTR 0.33 TCGA-AZ-4315-01 5 59943313 59943313 T - DEPDC1B Frame_Shift_Del p.N121Tfs*25 0.21 TCGA-AZ-4315-01 5 59943362 59943362 T G DEPDC1B Splice_Site p.X105_splice 0.26 TCGA-AZ-4315-01 5 60050419 60050419 T C ELOVL7 3'UTR 0.30 TCGA-AZ-4315-01 5 61875642 61875642 G A LRRC70 Missense_Mutation p.G126E 0.30 tolerated(0.08) probably_damaging(0.984) TCGA-AZ-4315-01 5 64483943 64483943 G A ADAMTS6 Missense_Mutation p.T937M 0.27 deleterious(0.01) possibly_damaging(0.829) TCGA-AZ-4315-01 5 64748569 64748569 C A ADAMTS6 Missense_Mutation p.D270Y 0.32 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 5 64863396 64863396 C T PPWD1 Missense_Mutation p.R85C 0.12 deleterious(0) probably_damaging(0.967) TCGA-AZ-4315-01 5 64865810 64865810 A G PPWD1 Missense_Mutation p.N169S 0.35 tolerated(0.34) probably_damaging(0.922) TCGA-AZ-4315-01 5 65473411 65473411 T C SREK1 Silent p.R550R 0.31 TCGA-AZ-4315-01 5 6625781 6625781 A G NSUN2 Missense_Mutation p.Y121H 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 5 66405977 66405977 C T MAST4 Nonsense_Mutation p.R470* 0.32 TCGA-AZ-4315-01 5 66426063 66426063 G T MAST4 Nonsense_Mutation p.E591* 0.31 TCGA-AZ-4315-01 5 67588130 67588130 C T PIK3R1 Silent p.N320N 0.28 TCGA-AZ-4315-01 5 67589618 67589618 C T PIK3R1 Nonsense_Mutation p.R461* 0.27 TCGA-AZ-4315-01 5 68471326 68471326 T G CCNB1 Missense_Mutation p.F349V 0.35 tolerated(0.1) benign(0.427) TCGA-AZ-4315-01 5 68606960 68606960 T G CCDC125 Missense_Mutation p.K146N 0.17 deleterious(0) benign(0.102) TCGA-AZ-4315-01 5 68661297 68661297 C A TAF9 Missense_Mutation p.D90Y 0.27 deleterious(0) possibly_damaging(0.836) TCGA-AZ-4315-01 5 68710222 68710222 G A RAD17 3'UTR 0.36 TCGA-AZ-4315-01 5 68737429 68737429 G T MARVELD2 Missense_Mutation p.R542I 0.31 deleterious(0) possibly_damaging(0.882) TCGA-AZ-4315-01 5 69372886 69372886 G T SMN2 3'UTR 0.28 TCGA-AZ-4315-01 5 70791147 70791147 G A BDP1 Missense_Mutation p.E571K 0.36 tolerated(0.15) probably_damaging(0.952) TCGA-AZ-4315-01 5 70818639 70818639 T C BDP1 Silent p.G1750G 0.29 TCGA-AZ-4315-01 5 71411594 71411594 G A MAP1B Missense_Mutation p.R85Q 0.32 unknown(0) TCGA-AZ-4315-01 5 71492989 71492989 G T MAP1B Missense_Mutation p.K1269N 0.37 probably_damaging(0.962) TCGA-AZ-4315-01 5 71493859 71493859 G A MAP1B Silent p.T1559T 0.29 TCGA-AZ-4315-01 5 71757278 71757278 C T ZNF366 Missense_Mutation p.D16N 0.30 tolerated_low_confidence(1) benign(0) TCGA-AZ-4315-01 5 72419418 72419418 C T TMEM171 Missense_Mutation p.A73V 0.33 tolerated(0.15) benign(0.02) TCGA-AZ-4315-01 5 73930590 73930590 G A ENC1 Missense_Mutation p.S574L 0.35 deleterious(0) benign(0.02) TCGA-AZ-4315-01 5 74063128 74063128 A C GFM2 5'UTR 0.26 TCGA-AZ-4315-01 5 74078921 74078921 G A FAM169A Silent p.D433D 0.27 TCGA-AZ-4315-01 5 74109710 74109710 C A FAM169A Missense_Mutation p.D209Y 0.34 deleterious(0) probably_damaging(0.919) TCGA-AZ-4315-01 5 74137467 74137467 C T FAM169A Missense_Mutation p.S12N 0.22 deleterious(0.01) possibly_damaging(0.735) TCGA-AZ-4315-01 5 74326310 74326310 A C GCNT4 5'UTR 0.35 TCGA-AZ-4315-01 5 74656373 74656373 T G HMGCR 3'UTR 0.47 TCGA-AZ-4315-01 5 74681788 74681788 G A COL4A3BP Silent p.G580G 0.47 TCGA-AZ-4315-01 5 74877231 74877231 C T POLK Missense_Mutation p.R298C 0.35 deleterious(0) probably_damaging(0.973) TCGA-AZ-4315-01 5 75427921 75427921 G T SV2C Nonsense_Mutation p.E116* 0.33 TCGA-AZ-4315-01 5 75936791 75936791 C T IQGAP2 Missense_Mutation p.R653C 0.52 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 5 76129240 76129240 C T F2RL1 Nonsense_Mutation p.R270* 0.37 TCGA-AZ-4315-01 5 76173562 76173562 G A S100Z Missense_Mutation p.E69K 0.28 tolerated(0.56) benign(0.051) TCGA-AZ-4315-01 5 76254629 76254629 G A CRHBP Missense_Mutation p.R203Q 0.22 deleterious(0.04) benign(0.063) TCGA-AZ-4315-01 5 76264797 76264797 G T CRHBP 3'UTR 0.33 TCGA-AZ-4315-01 5 76335420 76335420 G A AGGF1 Missense_Mutation p.R249H 0.34 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 5 76351407 76351407 A C AGGF1 Missense_Mutation p.K568Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 76621400 76621400 G A PDE8B Missense_Mutation p.D146N 0.37 tolerated(0.64) benign(0.258) TCGA-AZ-4315-01 5 76633053 76633053 G A PDE8B Missense_Mutation p.R237K 0.36 tolerated(0.11) benign(0.02) TCGA-AZ-4315-01 5 76729031 76729031 C A WDR41 Nonsense_Mutation p.E437* 0.34 TCGA-AZ-4315-01 5 76932808 76932808 G A OTP Silent p.A95A 0.27 TCGA-AZ-4315-01 5 78111906 78111906 T C ARSB Intron 0.27 TCGA-AZ-4315-01 5 78294008 78294008 A C DMGDH Missense_Mutation p.L833R 0.37 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 5 78320110 78320110 A C DMGDH Missense_Mutation p.F745C 0.32 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 5 78326781 78326781 A G DMGDH Missense_Mutation p.S520P 0.35 deleterious(0.04) benign(0.105) TCGA-AZ-4315-01 5 78340294 78340294 G A DMGDH Missense_Mutation p.S276L 0.29 tolerated(0.07) benign(0.426) TCGA-AZ-4315-01 5 7861312 7861312 C A FASTKD3 Nonsense_Mutation p.E612* 0.34 TCGA-AZ-4315-01 5 7867231 7867231 G A FASTKD3 Silent p.V322V 0.26 TCGA-AZ-4315-01 5 7889295 7889295 G A MTRR Missense_Mutation p.D439N 0.30 deleterious(0) probably_damaging(0.941) TCGA-AZ-4315-01 5 78936750 78936750 G A PAPD4 Missense_Mutation p.R181Q 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 5 79024845 79024845 A T CMYA5 Missense_Mutation p.E86V 0.28 possibly_damaging(0.788) TCGA-AZ-4315-01 5 79025359 79025359 A G CMYA5 Missense_Mutation p.I257M 0.35 possibly_damaging(0.703) TCGA-AZ-4315-01 5 79027415 79027415 G T CMYA5 Nonsense_Mutation p.G943* 0.29 TCGA-AZ-4315-01 5 79029828 79029828 C T CMYA5 Missense_Mutation p.S1747F 0.28 benign(0.135) TCGA-AZ-4315-01 5 79029928 79029928 A G CMYA5 Silent p.A1780A 0.45 TCGA-AZ-4315-01 5 79030264 79030264 A C CMYA5 Missense_Mutation p.E1892D 0.29 benign(0.099) TCGA-AZ-4315-01 5 79030906 79030906 A C CMYA5 Missense_Mutation p.K2106N 0.32 probably_damaging(0.981) TCGA-AZ-4315-01 5 79032174 79032174 T C CMYA5 Missense_Mutation p.I2529T 0.27 possibly_damaging(0.529) TCGA-AZ-4315-01 5 79034856 79034856 T G CMYA5 Missense_Mutation p.F3423C 0.32 probably_damaging(0.987) TCGA-AZ-4315-01 5 79282820 79282820 C T MTX3 Missense_Mutation p.R170H 0.35 tolerated(0.22) benign(0.005) TCGA-AZ-4315-01 5 79733120 79733120 G T ZFYVE16 Nonsense_Mutation p.E206* 0.18 TCGA-AZ-4315-01 5 79815589 79815589 C T FAM151B Missense_Mutation p.A132V 0.39 deleterious(0.01) probably_damaging(0.982) TCGA-AZ-4315-01 5 80408454 80408454 G A RASGRF2 Missense_Mutation p.D622N 0.31 deleterious(0.05) possibly_damaging(0.509) TCGA-AZ-4315-01 5 80497250 80497250 G A RASGRF2 Silent p.A965A 0.27 TCGA-AZ-4315-01 5 80504217 80504217 G A RASGRF2 Missense_Mutation p.R1039K 0.24 tolerated(0.35) possibly_damaging(0.77) TCGA-AZ-4315-01 5 80553641 80553641 G A CKMT2 Missense_Mutation p.R282Q 0.27 tolerated(0.21) benign(0.22) TCGA-AZ-4315-01 5 80631612 80631612 G A ACOT12 Nonsense_Mutation p.R413* 0.25 TCGA-AZ-4315-01 5 80724500 80724500 A C SSBP2 Missense_Mutation p.N320K 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.864) TCGA-AZ-4315-01 5 82554506 82554506 T G XRCC4 Intron 0.34 TCGA-AZ-4315-01 5 82649046 82649046 C A XRCC4 Silent p.L332L 0.31 TCGA-AZ-4315-01 5 82779399 82779399 T C VCAN Missense_Mutation p.L21P 0.32 deleterious(0) possibly_damaging(0.883) TCGA-AZ-4315-01 5 82786033 82786033 C T VCAN Missense_Mutation p.R63C 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 82808265 82808265 C T VCAN Intron 0.31 TCGA-AZ-4315-01 5 82816031 82816031 C T VCAN Missense_Mutation p.L636F 0.26 tolerated(1) benign(0.001) TCGA-AZ-4315-01 5 82816187 82816187 G T VCAN Nonsense_Mutation p.E688* 0.33 TCGA-AZ-4315-01 5 82834355 82834355 G T VCAN Nonsense_Mutation p.E1845* 0.41 TCGA-AZ-4315-01 5 82835782 82835782 C A VCAN Silent p.I2320I 0.33 TCGA-AZ-4315-01 5 82836035 82836035 G A VCAN Missense_Mutation p.A2405T 0.35 tolerated(1) benign(0) TCGA-AZ-4315-01 5 82837443 82837443 C T VCAN Missense_Mutation p.A2874V 0.28 tolerated(0.27) benign(0.017) TCGA-AZ-4315-01 5 82937378 82937378 G A HAPLN1 Silent p.F334F 0.32 TCGA-AZ-4315-01 5 82940192 82940192 G T HAPLN1 Silent p.S255S 0.29 TCGA-AZ-4315-01 5 82948427 82948427 C T HAPLN1 Missense_Mutation p.G106E 0.09 deleterious(0.03) benign(0.155) TCGA-AZ-4315-01 5 82948437 82948437 T G HAPLN1 Missense_Mutation p.K103Q 0.44 deleterious(0.01) benign(0.168) TCGA-AZ-4315-01 5 82948487 82948487 G A HAPLN1 Missense_Mutation p.S86L 0.46 tolerated(0.19) benign(0.028) TCGA-AZ-4315-01 5 83356122 83356122 T C EDIL3 Silent p.L378L 0.33 TCGA-AZ-4315-01 5 85582714 85582714 G A NBPF22P Splice_Site 0.32 TCGA-AZ-4315-01 5 85582725 85582725 G T NBPF22P RNA 0.30 TCGA-AZ-4315-01 5 86565078 86565078 A G RASA1 Intron 0.24 TCGA-AZ-4315-01 5 86672759 86672759 G A RASA1 Missense_Mutation p.R749Q 0.30 deleterious(0.01) probably_damaging(0.912) TCGA-AZ-4315-01 5 86697573 86697573 G A CCNH Silent p.L236L 0.36 TCGA-AZ-4315-01 5 89689788 89689788 G T CETN3 3'UTR 0.31 TCGA-AZ-4315-01 5 89781436 89781436 G A POLR3G Missense_Mutation p.A18T 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-AZ-4315-01 5 89968392 89968392 T C GPR98 Silent p.C1594C 0.31 TCGA-AZ-4315-01 5 89989943 89989943 C A GPR98 Missense_Mutation p.A2457D 0.27 possibly_damaging(0.804) TCGA-AZ-4315-01 5 90077229 90077229 T - GPR98 Intron 0.21 TCGA-AZ-4315-01 5 90079686 90079686 A G GPR98 Missense_Mutation p.T4489A 0.27 benign(0.132) TCGA-AZ-4315-01 5 90106344 90106344 T G GPR98 Missense_Mutation p.F5089L 0.38 benign(0) TCGA-AZ-4315-01 5 93732032 93732032 G A KIAA0825 Missense_Mutation p.R1024W 0.30 deleterious(0) possibly_damaging(0.901) TCGA-AZ-4315-01 5 93966346 93966346 G T ANKRD32 Missense_Mutation p.R110I 0.13 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 94030994 94030994 C T ANKRD32 Missense_Mutation p.R1052W 0.28 tolerated(0.11) benign(0.002) TCGA-AZ-4315-01 5 94030997 94030997 T C ANKRD32 Missense_Mutation p.S1053P 0.27 deleterious(0.01) possibly_damaging(0.899) TCGA-AZ-4315-01 5 94044261 94044261 C T MCTP1 Missense_Mutation p.E962K 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 94800186 94800186 C A TTC37 3'UTR 0.44 TCGA-AZ-4315-01 5 94800280 94800280 C A TTC37 3'UTR 0.37 TCGA-AZ-4315-01 5 94838628 94838628 A G TTC37 Silent p.Y1099Y 0.38 TCGA-AZ-4315-01 5 94988672 94988672 C A RFESD Intron 0.41 TCGA-AZ-4315-01 5 94994174 94994174 A C SPATA9 3'UTR 0.29 TCGA-AZ-4315-01 5 95236681 95236681 G T ELL2 Nonsense_Mutation p.S282* 0.40 TCGA-AZ-4315-01 5 95728588 95728588 C T PCSK1 3'UTR 0.34 TCGA-AZ-4315-01 5 95748176 95748176 C T PCSK1 Missense_Mutation p.G243D 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 5 9629347 9629347 A G TAS2R1 Silent p.I266I 0.27 TCGA-AZ-4315-01 5 9629892 9629892 G T TAS2R1 Missense_Mutation p.L85I 0.25 tolerated(0.23) benign(0.005) TCGA-AZ-4315-01 5 96341896 96341896 C A LNPEP Missense_Mutation p.F635L 0.35 deleterious(0.01) possibly_damaging(0.488) TCGA-AZ-4315-01 5 96503097 96503097 C A RIOK2 Intron 0.37 TCGA-AZ-4315-01 5 98193950 98193950 C A CHD1 Missense_Mutation p.R1574I 0.28 deleterious_low_confidence(0) benign(0.014) TCGA-AZ-4315-01 5 98199254 98199254 T G CHD1 Missense_Mutation p.K1429Q 0.37 deleterious(0.03) possibly_damaging(0.833) TCGA-AZ-4315-01 5 98204299 98204299 T G CHD1 Missense_Mutation p.K1383T 0.28 tolerated(0.06) benign(0.025) TCGA-AZ-4315-01 5 98221306 98221306 A G CHD1 Silent p.D848D 0.36 TCGA-AZ-4315-01 6 100841571 100841571 C T SIM1 Silent p.S454S 0.28 TCGA-AZ-4315-01 6 101086481 101086481 G T ASCC3 Nonsense_Mutation p.S1373* 0.29 TCGA-AZ-4315-01 6 101100740 101100740 C T ASCC3 Missense_Mutation p.R950Q 0.24 tolerated(0.17) possibly_damaging(0.754) TCGA-AZ-4315-01 6 102307264 102307264 C A GRIK2 Missense_Mutation p.L474I 0.42 tolerated(0.07) probably_damaging(0.997) TCGA-AZ-4315-01 6 105198346 105198346 G A HACE1 Missense_Mutation p.A738V 0.35 tolerated(0.21) benign(0.089) TCGA-AZ-4315-01 6 105526678 105526678 C A LIN28B 3'UTR 0.32 TCGA-AZ-4315-01 6 105816854 105816854 A G PREP Missense_Mutation p.V214A 0.24 tolerated(0.51) benign(0.006) TCGA-AZ-4315-01 6 10587070 10587070 C T GCNT2 Intron 0.23 TCGA-AZ-4315-01 6 106546866 106546866 T C PRDM1 Intron 0.34 TCGA-AZ-4315-01 6 10724793 10724793 T G TMEM14C 5'UTR 0.19 TCGA-AZ-4315-01 6 108026382 108026382 C T SCML4 3'Flank 0.25 TCGA-AZ-4315-01 6 108496068 108496068 G T NR2E1 Missense_Mutation p.R67I 0.24 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 6 108501554 108501554 G A NR2E1 Missense_Mutation p.E224K 0.24 deleterious(0) probably_damaging(0.927) TCGA-AZ-4315-01 6 10874096 10874096 G A GCM2 3'UTR 0.40 TCGA-AZ-4315-01 6 109220944 109220944 G A ARMC2 Missense_Mutation p.E266K 0.30 tolerated(0.06) benign(0.057) TCGA-AZ-4315-01 6 109484260 109484260 A G CEP57L1 3'UTR 0.55 TCGA-AZ-4315-01 6 10961572 10961572 C A SYCP2L Missense_Mutation p.L764I 0.25 deleterious(0.02) possibly_damaging(0.819) TCGA-AZ-4315-01 6 109752405 109752405 G A PPIL6 Silent p.D125D 0.21 TCGA-AZ-4315-01 6 109773724 109773724 G A MICAL1 Silent p.F222F 0.20 TCGA-AZ-4315-01 6 109818757 109818757 A C AK9 Silent p.A1742A 0.41 TCGA-AZ-4315-01 6 109835535 109835535 C A AK9 Nonsense_Mutation p.E1391* 0.35 TCGA-AZ-4315-01 6 10984049 10984049 C T ELOVL2 Missense_Mutation p.A286T 0.28 tolerated(0.62) benign(0.002) TCGA-AZ-4315-01 6 109993160 109993160 A G AK9 Missense_Mutation p.M98T 0.39 deleterious(0) benign(0.348) TCGA-AZ-4315-01 6 110107587 110107587 C A FIG4 Missense_Mutation p.F677L 0.30 tolerated(0.22) benign(0.015) TCGA-AZ-4315-01 6 110423338 110423339 - G WASF1 Frame_Shift_Ins p.P326Tfs*77 0.18 TCGA-AZ-4315-01 6 110522830 110522830 G A CDC40 Missense_Mutation p.E116K 0.34 deleterious(0.02) benign(0.334) TCGA-AZ-4315-01 6 110533447 110533447 A G CDC40 Missense_Mutation p.Q280R 0.21 tolerated(0.3) benign(0.091) TCGA-AZ-4315-01 6 110745927 110745927 C A SLC22A16 3'UTR 0.36 TCGA-AZ-4315-01 6 11105573 11105573 G A ERVFRD-1 5'UTR 0.22 TCGA-AZ-4315-01 6 111281618 111281618 G A GTF3C6 Missense_Mutation p.G47D 0.32 tolerated(0.1) probably_damaging(0.998) TCGA-AZ-4315-01 6 111587172 111587172 C G KIAA1919 Missense_Mutation p.A136G 0.28 deleterious(0) possibly_damaging(0.904) TCGA-AZ-4315-01 6 111695977 111695977 C T REV3L Missense_Mutation p.R1194Q 0.29 tolerated_low_confidence(0.6) benign(0.341) TCGA-AZ-4315-01 6 111737646 111737646 T C REV3L Missense_Mutation p.I57V 0.33 tolerated(0.95) benign(0.004) TCGA-AZ-4315-01 6 11185845 11185845 C T NEDD9 Silent p.S685S 0.30 TCGA-AZ-4315-01 6 11201199 11201199 C A NEDD9 Intron 0.70 TCGA-AZ-4315-01 6 112024169 112024169 G A FYN Missense_Mutation p.R206C 0.38 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 6 11213554 11213554 C A NEDD9 Missense_Mutation p.R140I 0.33 deleterious(0.02) probably_damaging(0.921) TCGA-AZ-4315-01 6 112389575 112389575 G A WISP3 Missense_Mutation p.D271N 0.34 tolerated(0.27) benign(0.014) TCGA-AZ-4315-01 6 112392705 112392705 A C TUBE1 Silent p.S446S 0.26 TCGA-AZ-4315-01 6 112494005 112494005 T C LAMA4 Silent p.L453L 0.39 TCGA-AZ-4315-01 6 112671027 112671027 A G RFPL4B Missense_Mutation p.I39M 0.31 tolerated(1) benign(0.002) TCGA-AZ-4315-01 6 112671031 112671031 G T RFPL4B Nonsense_Mutation p.E41* 0.31 TCGA-AZ-4315-01 6 116866695 116866695 G T TRAPPC3L 5'UTR 0.38 TCGA-AZ-4315-01 6 116948931 116948931 G A RSPH4A Missense_Mutation p.R354H 0.31 deleterious(0.02) probably_damaging(1) TCGA-AZ-4315-01 6 117047041 117047041 T C KPNA5 Splice_Site p.X375_splice 0.35 TCGA-AZ-4315-01 6 117073641 117073641 C T FAM162B 3'UTR 0.27 TCGA-AZ-4315-01 6 117240431 117240431 G A RFX6 Missense_Mutation p.R385Q 0.29 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 6 117244312 117244312 G T RFX6 Missense_Mutation p.D494Y 0.27 deleterious(0) probably_damaging(0.947) TCGA-AZ-4315-01 6 117250119 117250119 C T RFX6 Nonsense_Mutation p.R866* 0.36 TCGA-AZ-4315-01 6 117658374 117658374 C A ROS1 Nonsense_Mutation p.E1737* 0.30 TCGA-AZ-4315-01 6 117662700 117662700 C A ROS1 Nonsense_Mutation p.E1589* 0.26 TCGA-AZ-4315-01 6 117710693 117710693 C T ROS1 Missense_Mutation p.E527K 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-AZ-4315-01 6 118596709 118596709 G A SLC35F1 Missense_Mutation p.R242Q 0.26 deleterious(0) benign(0.067) TCGA-AZ-4315-01 6 118812920 118812920 A C CEP85L Missense_Mutation p.L459V 0.37 tolerated(0.7) benign(0.042) TCGA-AZ-4315-01 6 118880037 118880037 C A PLN 5'UTR 0.25 TCGA-AZ-4315-01 6 118973934 118973934 C A CEP85L Missense_Mutation p.R4I 0.32 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-AZ-4315-01 6 119295722 119295722 A G FAM184A Missense_Mutation p.L929S 0.32 tolerated(0.09) benign(0.384) TCGA-AZ-4315-01 6 119345793 119345793 T G FAM184A Missense_Mutation p.L115F 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-AZ-4315-01 6 121562684 121562684 T G TBC1D32 Missense_Mutation p.K724N 0.36 deleterious(0) benign(0.169) TCGA-AZ-4315-01 6 121769157 121769157 G A GJA1 3'UTR 0.41 TCGA-AZ-4315-01 6 121769236 121769236 A G GJA1 3'UTR 0.35 TCGA-AZ-4315-01 6 122734703 122734703 C T HSF2 Missense_Mutation p.R122C 0.34 tolerated(0.14) benign(0.021) TCGA-AZ-4315-01 6 123539651 123539651 C A TRDN 3'UTR 0.26 TCGA-AZ-4315-01 6 125404057 125404057 C T RNF217 3'UTR 0.22 TCGA-AZ-4315-01 6 125619885 125619885 T C HDDC2 Missense_Mutation p.K95R 0.35 deleterious(0.01) benign(0.098) TCGA-AZ-4315-01 6 126288057 126288057 G T HINT3 Missense_Mutation p.D76Y 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 126360009 126360009 G T TRMT11 3'UTR 0.40 TCGA-AZ-4315-01 6 127518840 127518840 T C RSPO3 3'Flank 0.62 TCGA-AZ-4315-01 6 127608355 127608355 C T RNF146 Silent p.D199D 0.34 TCGA-AZ-4315-01 6 127768167 127768167 T C KIAA0408 Missense_Mutation p.T433A 0.14 tolerated(0.34) benign(0.014) TCGA-AZ-4315-01 6 127836045 127836045 C T SOGA3 Missense_Mutation p.E417K 0.31 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 6 127836184 127836184 G A SOGA3 Silent p.I370I 0.52 TCGA-AZ-4315-01 6 127911256 127911256 A C C6orf58 Missense_Mutation p.E233D 0.38 deleterious(0) possibly_damaging(0.849) TCGA-AZ-4315-01 6 127911446 127911446 C T C6orf58 Missense_Mutation p.L297F 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-AZ-4315-01 6 128031093 128031093 T G THEMIS 3'UTR 0.33 TCGA-AZ-4315-01 6 12933942 12933942 G A PHACTR1 Missense_Mutation p.E110K 0.70 unknown(0) TCGA-AZ-4315-01 6 129371128 129371128 G T LAMA2 Nonsense_Mutation p.E60* 0.33 TCGA-AZ-4315-01 6 129381035 129381035 A G LAMA2 Silent p.L130L 0.31 TCGA-AZ-4315-01 6 129722400 129722400 G A LAMA2 Missense_Mutation p.R1826Q 0.36 tolerated(0.84) benign(0.007) TCGA-AZ-4315-01 6 129724985 129724985 A G LAMA2 Missense_Mutation p.N1916D 0.41 tolerated(0.08) possibly_damaging(0.488) TCGA-AZ-4315-01 6 129766947 129766947 C A LAMA2 Missense_Mutation p.A2137D 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 129785448 129785448 G T LAMA2 Missense_Mutation p.D2336Y 0.35 deleterious(0) probably_damaging(0.963) TCGA-AZ-4315-01 6 129824275 129824275 C T LAMA2 Silent p.S2799S 0.19 TCGA-AZ-4315-01 6 129824427 129824427 T C LAMA2 Splice_Site p.X2849_splice 0.43 TCGA-AZ-4315-01 6 129833512 129833512 T C LAMA2 Silent p.G2954G 0.30 TCGA-AZ-4315-01 6 129929185 129929185 C A ARHGAP18 Nonsense_Mutation p.E379* 0.43 TCGA-AZ-4315-01 6 129963075 129963075 C T ARHGAP18 Missense_Mutation p.D68N 0.36 deleterious(0.03) possibly_damaging(0.694) TCGA-AZ-4315-01 6 130460947 130460947 T G L3MBTL3 3'UTR 0.27 TCGA-AZ-4315-01 6 130497111 130497111 G A SAMD3 Nonsense_Mutation p.R233* 0.35 TCGA-AZ-4315-01 6 130763249 130763249 T G TMEM200A 3'UTR 0.34 TCGA-AZ-4315-01 6 131222181 131222181 C T EPB41L2 Missense_Mutation p.D357N 0.29 tolerated(0.68) benign(0.017) TCGA-AZ-4315-01 6 131925369 131925369 G A MED23 Missense_Mutation p.R569C 0.38 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 6 131926513 131926513 C T MED23 Missense_Mutation p.A494T 0.32 tolerated(0.63) benign(0.088) TCGA-AZ-4315-01 6 132022495 132022495 A C OR2A4 Missense_Mutation p.F16C 0.23 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 6 132029746 132029746 T C CTAGE9 3'UTR 0.64 TCGA-AZ-4315-01 6 132059305 132059305 T C ENPP3 Splice_Site p.X767_splice 0.33 TCGA-AZ-4315-01 6 132068208 132068208 C T ENPP3 3'UTR 0.30 TCGA-AZ-4315-01 6 132194152 132194152 C A ENPP1 Silent p.P509P 0.23 TCGA-AZ-4315-01 6 132211607 132211607 T G ENPP1 Missense_Mutation p.L912V 0.36 deleterious(0) probably_damaging(0.927) TCGA-AZ-4315-01 6 13228126 13228126 A G PHACTR1 Silent p.G355G 0.27 TCGA-AZ-4315-01 6 132891745 132891745 G A TAAR6 Silent p.E95E 0.33 TCGA-AZ-4315-01 6 132892138 132892138 A G TAAR6 Silent p.R226R 0.29 TCGA-AZ-4315-01 6 132892315 132892315 C T TAAR6 Silent p.G285G 0.34 TCGA-AZ-4315-01 6 132909889 132909889 G A TAAR5 Missense_Mutation p.R313W 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 6 132938300 132938300 C A TAAR2 Nonsense_Mutation p.E349* 0.40 TCGA-AZ-4315-01 6 132938378 132938378 G A TAAR2 Missense_Mutation p.R323C 0.25 deleterious(0.02) possibly_damaging(0.8) TCGA-AZ-4315-01 6 132966742 132966742 T G TAAR1 Missense_Mutation p.K134T 0.30 tolerated(0.14) probably_damaging(0.918) TCGA-AZ-4315-01 6 132967070 132967070 A G TAAR1 Missense_Mutation p.S25P 0.32 tolerated(0.25) benign(0.001) TCGA-AZ-4315-01 6 133005599 133005599 C T VNN1 Missense_Mutation p.G412S 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 133065593 133065593 G T VNN2 Nonsense_Mutation p.S470* 0.18 TCGA-AZ-4315-01 6 133110972 133110972 A G SLC18B1 Missense_Mutation p.V95A 0.23 tolerated(0.07) benign(0.1) TCGA-AZ-4315-01 6 13321159 13321159 C T TBC1D7 Missense_Mutation p.R121Q 0.19 tolerated(0.29) benign(0.001) TCGA-AZ-4315-01 6 133777683 133777683 C A EYA4 Intron 0.21 TCGA-AZ-4315-01 6 133789802 133789802 T C EYA4 Silent p.D301D 0.34 TCGA-AZ-4315-01 6 134492161 134492161 G A SGK1 Silent p.F441F 0.34 TCGA-AZ-4315-01 6 13470750 13470750 T C GFOD1 Intron 0.32 TCGA-AZ-4315-01 6 13604744 13604744 G T SIRT5 Intron 0.21 TCGA-AZ-4315-01 6 136922982 136922982 T G MAP3K5 Missense_Mutation p.K939Q 0.32 tolerated(0.29) benign(0.086) TCGA-AZ-4315-01 6 136926408 136926408 T G MAP3K5 Missense_Mutation p.E873A 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 136934280 136934280 T C MAP3K5 Missense_Mutation p.Q798R 0.21 tolerated(0.15) possibly_damaging(0.545) TCGA-AZ-4315-01 6 137468983 137468983 G T IL22RA2 Missense_Mutation p.S173Y 0.33 tolerated(0.18) benign(0.16) TCGA-AZ-4315-01 6 137536492 137536492 T G IFNGR1 Intron 0.36 TCGA-AZ-4315-01 6 13800603 13800603 G A MCUR1 Silent p.L251L 0.63 TCGA-AZ-4315-01 6 138192572 138192572 G A TNFAIP3 Missense_Mutation p.D70N 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 138584538 138584538 G T KIAA1244 Nonsense_Mutation p.E640* 0.28 TCGA-AZ-4315-01 6 138727114 138727114 A C HEBP2 Missense_Mutation p.K82T 0.33 deleterious(0.04) possibly_damaging(0.492) TCGA-AZ-4315-01 6 138763241 138763241 G A NHSL1 Intron 0.30 TCGA-AZ-4315-01 6 138820404 138820404 C A NHSL1 Intron 0.34 TCGA-AZ-4315-01 6 138893077 138893077 G T NHSL1 5'UTR 0.32 TCGA-AZ-4315-01 6 139269018 139269018 A G REPS1 Silent p.G62G 0.31 TCGA-AZ-4315-01 6 139269025 139269025 C A REPS1 Missense_Mutation p.R60I 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 139498200 139498200 C T HECA Silent p.F530F 0.34 TCGA-AZ-4315-01 6 139598053 139598053 C A TXLNB Nonsense_Mutation p.E144* 0.33 TCGA-AZ-4315-01 6 139609632 139609632 C A TXLNB Missense_Mutation p.K135N 0.34 deleterious(0.02) probably_damaging(0.982) TCGA-AZ-4315-01 6 13977427 13977427 G A RNF182 Missense_Mutation p.R26Q 0.13 tolerated(0.1) probably_damaging(0.948) TCGA-AZ-4315-01 6 13978749 13978749 A C RNF182 3'UTR 0.63 TCGA-AZ-4315-01 6 13979905 13979905 G T RNF182 3'UTR 0.67 TCGA-AZ-4315-01 6 13980174 13980174 C A RNF182 3'UTR 0.31 TCGA-AZ-4315-01 6 142729330 142729330 C T GPR126 Missense_Mutation p.A771V 0.33 deleterious(0) probably_damaging(0.969) TCGA-AZ-4315-01 6 143793363 143793363 C T PEX3 Silent p.L215L 0.39 TCGA-AZ-4315-01 6 144262538 144262538 G A PLAGL1 3'UTR 0.50 TCGA-AZ-4315-01 6 144269312 144269312 A G PLAGL1 5'UTR 0.31 TCGA-AZ-4315-01 6 144508440 144508440 G A STX11 Missense_Mutation p.E226K 0.35 deleterious(0.03) benign(0.141) TCGA-AZ-4315-01 6 145115110 145115110 C T UTRN Missense_Mutation p.R3021C 0.42 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 6 145161953 145161953 T G UTRN Missense_Mutation p.F3419V 0.22 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 6 146264408 146264408 G A SHPRH Silent p.C703C 0.30 TCGA-AZ-4315-01 6 146755569 146755569 C T GRM1 Silent p.H1074H 0.22 TCGA-AZ-4315-01 6 146875594 146875594 T C RAB32 Silent p.D177D 0.43 TCGA-AZ-4315-01 6 146993471 146993471 G T ADGB Nonsense_Mutation p.E319* 0.35 TCGA-AZ-4315-01 6 147012387 147012387 C T ADGB Missense_Mutation p.R483C 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 147073819 147073819 C A ADGB Missense_Mutation p.F1173L 0.38 deleterious(0.03) benign(0.102) TCGA-AZ-4315-01 6 147105859 147105859 A G ADGB Missense_Mutation p.T1381A 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 147123792 147123792 T C ADGB Intron 0.33 TCGA-AZ-4315-01 6 147124488 147124488 C T ADGB Intron 0.29 TCGA-AZ-4315-01 6 147136460 147136460 C A ADGB 3'UTR 0.22 TCGA-AZ-4315-01 6 147136464 147136464 T G ADGB 3'UTR 0.19 TCGA-AZ-4315-01 6 147704027 147704027 C T STXBP5 Nonsense_Mutation p.R1103* 0.31 TCGA-AZ-4315-01 6 147705968 147705968 T C STXBP5 3'Flank 0.32 TCGA-AZ-4315-01 6 148864824 148864824 C T SASH1 Missense_Mutation p.R740W 0.38 deleterious(0) possibly_damaging(0.614) TCGA-AZ-4315-01 6 149285625 149285625 C T UST Missense_Mutation p.R203C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 149395056 149395056 G T UST Missense_Mutation p.R342I 0.26 tolerated(0.08) benign(0.37) TCGA-AZ-4315-01 6 149700455 149700455 C A TAB2 Silent p.V468V 0.33 TCGA-AZ-4315-01 6 149722089 149722089 C A SUMO4 3'UTR 0.36 TCGA-AZ-4315-01 6 149912000 149912000 G A GINM1 3'UTR 0.26 TCGA-AZ-4315-01 6 149982976 149982976 C T LATS1 Silent p.P1094P 0.35 TCGA-AZ-4315-01 6 150114694 150114694 A C PCMT1 Missense_Mutation p.T161P 0.31 tolerated(0.09) possibly_damaging(0.56) TCGA-AZ-4315-01 6 150322311 150322311 C A RAET1K RNA 0.49 TCGA-AZ-4315-01 6 151152599 151152599 T C PLEKHG1 Silent p.F784F 0.33 TCGA-AZ-4315-01 6 151247412 151247412 A C MTHFD1L Missense_Mutation p.K413Q 0.28 deleterious(0.01) probably_damaging(0.97) TCGA-AZ-4315-01 6 151670274 151670274 G A AKAP12 Missense_Mutation p.A250T 0.37 tolerated(1) benign(0.002) TCGA-AZ-4315-01 6 151671726 151671726 G T AKAP12 Nonsense_Mutation p.E734* 0.27 TCGA-AZ-4315-01 6 151673891 151673891 G A AKAP12 Silent p.E1455E 0.17 TCGA-AZ-4315-01 6 151674234 151674234 G A AKAP12 Missense_Mutation p.E1570K 0.31 tolerated(0.12) benign(0.369) TCGA-AZ-4315-01 6 151674611 151674611 G A AKAP12 Silent p.P1695P 0.26 TCGA-AZ-4315-01 6 151936783 151936783 C A CCDC170 Missense_Mutation p.S639Y 0.10 deleterious(0.02) benign(0.047) TCGA-AZ-4315-01 6 152485362 152485362 G A SYNE1 Missense_Mutation p.A7909V 0.32 possibly_damaging(0.491) TCGA-AZ-4315-01 6 152497683 152497683 C A SYNE1 Nonsense_Mutation p.E7825* 0.34 TCGA-AZ-4315-01 6 152542080 152542080 G A SYNE1 Missense_Mutation p.S7253L 0.38 benign(0.007) TCGA-AZ-4315-01 6 152589225 152589225 G A SYNE1 Nonsense_Mutation p.Q6261* 0.21 TCGA-AZ-4315-01 6 152638050 152638050 G T SYNE1 Silent p.V5548V 0.26 TCGA-AZ-4315-01 6 152651925 152651925 G A SYNE1 Missense_Mutation p.S4632L 0.31 benign(0.44) TCGA-AZ-4315-01 6 152679555 152679555 G T SYNE1 Missense_Mutation p.L3521I 0.35 possibly_damaging(0.585) TCGA-AZ-4315-01 6 152683409 152683409 G A SYNE1 Nonsense_Mutation p.R3399* 0.40 TCGA-AZ-4315-01 6 152694239 152694239 A C SYNE1 Missense_Mutation p.V3147G 0.30 benign(0.031) TCGA-AZ-4315-01 6 152708428 152708428 T G SYNE1 Missense_Mutation p.I2756L 0.36 benign(0.001) TCGA-AZ-4315-01 6 152756993 152756993 G T SYNE1 Intron 0.34 TCGA-AZ-4315-01 6 152762404 152762404 A G SYNE1 Missense_Mutation p.V1337A 0.38 benign(0.021) TCGA-AZ-4315-01 6 152765705 152765705 C A SYNE1 Missense_Mutation p.K1226N 0.12 benign(0.026) TCGA-AZ-4315-01 6 152774622 152774622 T A SYNE1 Intron 0.33 TCGA-AZ-4315-01 6 152841661 152841661 C T SYNE1 Missense_Mutation p.R81H 0.40 benign(0.082) TCGA-AZ-4315-01 6 154412548 154412548 C T OPRM1 Missense_Mutation p.R462C 0.38 deleterious(0.03) probably_damaging(0.983) TCGA-AZ-4315-01 6 154521036 154521036 C T IPCEF1 Missense_Mutation p.V226I 0.33 tolerated(0.17) possibly_damaging(0.81) TCGA-AZ-4315-01 6 154735541 154735541 G A CNKSR3 Missense_Mutation p.A321V 0.33 tolerated(0.24) benign(0.002) TCGA-AZ-4315-01 6 154744078 154744078 C T CNKSR3 Missense_Mutation p.E257K 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 155129890 155129890 C T SCAF8 Missense_Mutation p.A395V 0.34 tolerated_low_confidence(0.11) unknown(0) TCGA-AZ-4315-01 6 155136871 155136871 T C SCAF8 Missense_Mutation p.V481A 0.20 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 6 155154227 155154227 G T SCAF8 Nonsense_Mutation p.E1172* 0.28 TCGA-AZ-4315-01 6 155450824 155450824 G A TIAM2 Missense_Mutation p.R156H 0.30 deleterious_low_confidence(0.03) benign(0.008) TCGA-AZ-4315-01 6 155485641 155485641 G A TIAM2 Silent p.P707P 0.40 TCGA-AZ-4315-01 6 155764537 155764537 G A NOX3 Missense_Mutation p.A119V 0.33 deleterious(0) possibly_damaging(0.882) TCGA-AZ-4315-01 6 155776199 155776199 T G NOX3 Missense_Mutation p.E38A 0.36 tolerated(0.28) benign(0.219) TCGA-AZ-4315-01 6 157222590 157222590 G A ARID1B Silent p.Q619Q 0.33 TCGA-AZ-4315-01 6 157405905 157405905 C T ARID1B Missense_Mutation p.A716V 0.38 probably_damaging(0.998) TCGA-AZ-4315-01 6 157521868 157521868 C A ARID1B Nonsense_Mutation p.Y1380* 0.28 TCGA-AZ-4315-01 6 159057874 159057874 G A DYNLT1 Silent p.F109F 0.26 TCGA-AZ-4315-01 6 159262741 159262741 C A OSTCP1 RNA 0.33 TCGA-AZ-4315-01 6 159461769 159461769 G A TAGAP Silent p.I191I 0.42 TCGA-AZ-4315-01 6 159465025 159465025 G A TAGAP Silent p.I22I 0.69 TCGA-AZ-4315-01 6 159653489 159653489 G A FNDC1 Missense_Mutation p.E649K 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-AZ-4315-01 6 159660606 159660606 G A FNDC1 Missense_Mutation p.R1413Q 0.32 deleterious(0) unknown(0) TCGA-AZ-4315-01 6 160431812 160431812 A C IGF2R Missense_Mutation p.K170Q 0.24 deleterious(0.04) probably_damaging(0.983) TCGA-AZ-4315-01 6 160468929 160468929 G A IGF2R Missense_Mutation p.D779N 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 160829804 160829804 G A SLC22A3 Silent p.S236S 0.33 TCGA-AZ-4315-01 6 161157918 161157918 G A PLG Splice_Site p.X561_splice 0.46 TCGA-AZ-4315-01 6 161470775 161470775 T G MAP3K4 Missense_Mutation p.S491A 0.16 tolerated(0.25) benign(0.001) TCGA-AZ-4315-01 6 161575273 161575273 C T AGPAT4 Missense_Mutation p.E140K 0.38 deleterious(0) possibly_damaging(0.895) TCGA-AZ-4315-01 6 16247101 16247101 G A GMPR Missense_Mutation p.R39Q 0.42 tolerated(0.08) benign(0.209) TCGA-AZ-4315-01 6 163483187 163483187 A C PACRG Missense_Mutation p.E99D 0.31 tolerated(0.61) benign(0.173) TCGA-AZ-4315-01 6 163483297 163483297 A G PACRG Missense_Mutation p.E136G 0.32 deleterious(0.01) possibly_damaging(0.867) TCGA-AZ-4315-01 6 163876442 163876442 G T QKI Nonsense_Mutation p.E92* 0.31 TCGA-AZ-4315-01 6 163987884 163987884 T G QKI Intron 0.36 TCGA-AZ-4315-01 6 165801918 165801918 G T PDE10A Missense_Mutation p.L561M 0.32 deleterious(0.01) probably_damaging(0.96) TCGA-AZ-4315-01 6 165846610 165846610 C T PDE10A Missense_Mutation p.R182Q 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-4315-01 6 166923771 166923771 G T RPS6KA2 Missense_Mutation p.H133N 0.25 deleterious(0.03) possibly_damaging(0.818) TCGA-AZ-4315-01 6 167594188 167594188 C T TCP10L2 Silent p.F279F 0.35 TCGA-AZ-4315-01 6 167709666 167709666 G A UNC93A Missense_Mutation p.G139D 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 167786764 167786764 T G TCP10 Missense_Mutation p.K292Q 0.28 tolerated(0.41) benign(0.192) TCGA-AZ-4315-01 6 168281056 168281056 T G MLLT4 Missense_Mutation p.I252M 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 168430293 168430293 C T KIF25 Missense_Mutation p.R10C 0.16 deleterious_low_confidence(0.01) benign(0.001) TCGA-AZ-4315-01 6 168465633 168465633 G A FRMD1 Missense_Mutation p.A189V 0.35 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 6 168709422 168709422 G A DACT2 Missense_Mutation p.H339Y 0.59 deleterious(0.01) benign(0.017) TCGA-AZ-4315-01 6 170103070 170103070 A G C6orf120 Missense_Mutation p.E172G 0.25 deleterious(0.01) possibly_damaging(0.732) TCGA-AZ-4315-01 6 170103514 170103514 T G C6orf120 3'UTR 0.38 TCGA-AZ-4315-01 6 170104866 170104866 C A C6orf120 3'UTR 0.22 TCGA-AZ-4315-01 6 170116079 170116079 C T PHF10 Missense_Mutation p.R172Q 0.27 tolerated(0.06) benign(0.018) TCGA-AZ-4315-01 6 170116169 170116169 C T PHF10 Missense_Mutation p.R142H 0.42 deleterious(0.03) possibly_damaging(0.855) TCGA-AZ-4315-01 6 170140334 170140334 C T TCTE3 Missense_Mutation p.E182K 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 170153972 170153972 G A ERMARD Missense_Mutation p.D7N 0.32 deleterious(0.04) benign(0.014) TCGA-AZ-4315-01 6 170697410 170697410 C T FAM120B Silent p.G773G 0.31 TCGA-AZ-4315-01 6 17556688 17556688 G A CAP2 3'UTR 0.34 TCGA-AZ-4315-01 6 17629138 17629138 A G NUP153 Missense_Mutation p.F1098L 0.28 deleterious(0.04) benign(0.049) TCGA-AZ-4315-01 6 24146212 24146212 C A NRSN1 3'UTR 0.38 TCGA-AZ-4315-01 6 24205455 24205455 T G DCDC2 Intron 0.27 TCGA-AZ-4315-01 6 24424131 24424131 A C MRS2 3'UTR 0.38 TCGA-AZ-4315-01 6 24448187 24448187 G A GPLD1 Silent p.I532I 0.39 TCGA-AZ-4315-01 6 24502805 24502805 G T ALDH5A1 Missense_Mutation p.D137Y 0.35 deleterious(0.01) benign(0.107) TCGA-AZ-4315-01 6 24566874 24566874 C A KIAA0319 Missense_Mutation p.R748I 0.64 deleterious(0) benign(0.102) TCGA-AZ-4315-01 6 24843180 24843180 C T FAM65B Silent p.G610G 0.26 TCGA-AZ-4315-01 6 24843615 24843615 C T FAM65B Silent p.E465E 0.29 TCGA-AZ-4315-01 6 25813132 25813132 A C SLC17A1 Missense_Mutation p.F275C 0.28 tolerated(0.18) possibly_damaging(0.855) TCGA-AZ-4315-01 6 25924003 25924003 G T SLC17A2 Missense_Mutation p.L54I 0.36 tolerated(0.41) benign(0.033) TCGA-AZ-4315-01 6 26017347 26017347 G A HIST1H1A Missense_Mutation p.A205V 0.32 tolerated(0.32) unknown(0) TCGA-AZ-4315-01 6 26092995 26092995 G T HFE Missense_Mutation p.Q233H 0.30 tolerated(0.08) possibly_damaging(0.575) TCGA-AZ-4315-01 6 2624242 2624242 A C C6orf195 5'UTR 0.26 TCGA-AZ-4315-01 6 26377352 26377352 G A BTN3A2 3'UTR 0.35 TCGA-AZ-4315-01 6 26385406 26385406 A G BTN2A2 Silent p.R86R 0.34 TCGA-AZ-4315-01 6 26444240 26444240 C T BTN3A3 Silent p.D47D 0.28 TCGA-AZ-4315-01 6 26597310 26597310 G T ABT1 Nonsense_Mutation p.E34* 0.35 TCGA-AZ-4315-01 6 26637538 26637538 A C ZNF322 3'UTR 0.29 TCGA-AZ-4315-01 6 27279869 27279869 C T POM121L2 Silent p.T27T 0.71 TCGA-AZ-4315-01 6 27368619 27368619 G T ZNF391 Missense_Mutation p.R157I 0.38 deleterious(0.04) probably_damaging(0.977) TCGA-AZ-4315-01 6 27368703 27368703 G T ZNF391 Missense_Mutation p.R185I 0.45 tolerated(0.14) probably_damaging(0.977) TCGA-AZ-4315-01 6 27369095 27369095 C T ZNF391 Nonsense_Mutation p.R316* 0.65 TCGA-AZ-4315-01 6 28056961 28056961 C T ZNF165 Missense_Mutation p.R391W 0.21 deleterious(0) possibly_damaging(0.659) TCGA-AZ-4315-01 6 28121622 28121622 G T ZKSCAN8 Nonsense_Mutation p.E522* 0.44 TCGA-AZ-4315-01 6 28228724 28228724 T G NKAPL 3'UTR 0.28 TCGA-AZ-4315-01 6 28403902 28403902 G A ZSCAN23 Missense_Mutation p.R48C 0.18 deleterious(0) probably_damaging(0.977) TCGA-AZ-4315-01 6 28539549 28539549 T G SCAND3 3'UTR 0.25 TCGA-AZ-4315-01 6 28963475 28963475 C T ZNF311 Missense_Mutation p.R435Q 0.65 deleterious(0.01) benign(0.211) TCGA-AZ-4315-01 6 29012579 29012579 G A OR2W1 Missense_Mutation p.A125V 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 6 29080037 29080037 G A OR2J3 Missense_Mutation p.D124N 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 29142263 29142263 C T OR2J2 Missense_Mutation p.P284L 0.67 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 29231750 29231750 G T XXbac-BPG308J9.3 RNA 0.12 TCGA-AZ-4315-01 6 29364554 29364554 C T OR12D2 Silent p.F26F 0.31 TCGA-AZ-4315-01 6 29431225 29431225 T G OR2H1 3'UTR 0.34 TCGA-AZ-4315-01 6 2959744 2959744 T A SERPINB6 5'UTR 0.38 TCGA-AZ-4315-01 6 29627188 29627188 G A MOG Missense_Mutation p.A61T 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 29639137 29639137 T C MOG Intron 0.23 TCGA-AZ-4315-01 6 29639166 29639166 T G MOG Intron 0.38 TCGA-AZ-4315-01 6 29644773 29644773 T G ZFP57 Missense_Mutation p.E3A 0.35 deleterious_low_confidence(0.03) benign(0.024) TCGA-AZ-4315-01 6 29911141 29911141 A G HLA-A Missense_Mutation p.Y147C 0.69 deleterious_low_confidence(0) probably_damaging(1) TCGA-AZ-4315-01 6 30071220 30071220 A G TRIM31 3'UTR 0.46 TCGA-AZ-4315-01 6 30121959 30121959 G A TRIM10 Silent p.F411F 0.25 TCGA-AZ-4315-01 6 30530386 30530386 A G PRR3 3'UTR 0.67 TCGA-AZ-4315-01 6 30574361 30574361 C T PPP1R10 Missense_Mutation p.R173Q 0.64 tolerated(0.35) benign(0.02) TCGA-AZ-4315-01 6 30708009 30708009 C T FLOT1 Missense_Mutation p.E217K 0.29 tolerated(0.11) possibly_damaging(0.506) TCGA-AZ-4315-01 6 30917126 30917126 G A DPCR1 Silent p.E295E 0.34 TCGA-AZ-4315-01 6 30954669 30954669 A C MUC21 Silent p.T239T 0.31 TCGA-AZ-4315-01 6 30955421 30955421 C T MUC21 Missense_Mutation p.A490V 0.32 tolerated(1) benign(0.044) TCGA-AZ-4315-01 6 31079606 31079606 C T C6orf15 Missense_Mutation p.R177Q 0.36 tolerated(0.45) possibly_damaging(0.776) TCGA-AZ-4315-01 6 3111039 3111039 G T RIPK1 Nonsense_Mutation p.E527* 0.28 TCGA-AZ-4315-01 6 3111146 3111146 G A RIPK1 Silent p.T562T 0.44 TCGA-AZ-4315-01 6 31238852 31238852 G A HLA-C Missense_Mutation p.A206V 0.12 tolerated_low_confidence(0.05) benign(0.072) TCGA-AZ-4315-01 6 31513906 31513906 A C ATP6V1G2 Missense_Mutation p.F55V 0.39 deleterious(0.01) benign(0.184) TCGA-AZ-4315-01 6 31762712 31762712 G T VARS Missense_Mutation p.L95I 0.08 tolerated_low_confidence(0.09) benign(0.066) TCGA-AZ-4315-01 6 31797389 31797389 G T HSPA1B Missense_Mutation p.E554D 0.05 tolerated_low_confidence(0.3) benign(0.011) TCGA-AZ-4315-01 6 32008230 32008230 T C CYP21A2 Silent p.G329G 0.31 TCGA-AZ-4315-01 6 32029441 32029441 G C TNXB Missense_Mutation p.P2409A 0.35 possibly_damaging(0.476) TCGA-AZ-4315-01 6 32035455 32035455 G T TNXB Missense_Mutation p.S2176Y 0.41 benign(0.242) TCGA-AZ-4315-01 6 32087640 32087640 G A ATF6B Silent p.P309P 0.24 TCGA-AZ-4315-01 6 32151081 32151081 C A AGER Intron 0.34 TCGA-AZ-4315-01 6 32168682 32168682 G A NOTCH4 Missense_Mutation p.A1414V 0.36 deleterious(0) benign(0.302) TCGA-AZ-4315-01 6 32260611 32260611 A C C6orf10 3'UTR 0.52 TCGA-AZ-4315-01 6 32339565 32339565 A C C6orf10 5'UTR 0.36 TCGA-AZ-4315-01 6 32724382 32724382 C A HLA-DQB2 Intron 0.33 TCGA-AZ-4315-01 6 32724993 32724993 C T HLA-DQB2 Intron 0.38 TCGA-AZ-4315-01 6 32725001 32725001 C A HLA-DQB2 Intron 0.25 TCGA-AZ-4315-01 6 32782983 32782983 C T HLA-DOB Missense_Mutation p.D67N 0.34 deleterious(0) possibly_damaging(0.827) TCGA-AZ-4315-01 6 32810026 32810026 C T PSMB8 Missense_Mutation p.R141Q 0.30 deleterious(0) possibly_damaging(0.828) TCGA-AZ-4315-01 6 33138137 33138137 C A COL11A2 Missense_Mutation p.G1097V 0.32 unknown(0) TCGA-AZ-4315-01 6 33168175 33168175 C A RXRB Nonsense_Mutation p.E27* 0.62 TCGA-AZ-4315-01 6 33168177 33168177 T G RXRB Missense_Mutation p.K26T 0.50 deleterious_low_confidence(0) unknown(0) TCGA-AZ-4315-01 6 33176652 33176652 T G RING1 Missense_Mutation p.L18R 0.32 deleterious(0) possibly_damaging(0.569) TCGA-AZ-4315-01 6 33260271 33260271 T G RGL2 Missense_Mutation p.K686N 0.32 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 6 33271416 33271416 T G TAPBP 3'UTR 0.30 TCGA-AZ-4315-01 6 33289501 33289501 C T DAXX Missense_Mutation p.E68K 0.67 tolerated(0.22) benign(0.351) TCGA-AZ-4315-01 6 33289661 33289661 G A DAXX Silent p.D14D 0.23 TCGA-AZ-4315-01 6 33371771 33371771 G T KIFC1 Missense_Mutation p.K207N 0.44 tolerated(0.43) benign(0.058) TCGA-AZ-4315-01 6 33633659 33633659 T C ITPR3 Missense_Mutation p.V486A 0.38 tolerated(0.24) possibly_damaging(0.868) TCGA-AZ-4315-01 6 33690369 33690369 G T IP6K3 3'UTR 0.24 TCGA-AZ-4315-01 6 33768841 33768841 C T MLN Missense_Mutation p.E34K 0.30 deleterious(0.02) probably_damaging(0.913) TCGA-AZ-4315-01 6 34256510 34256510 C A NUDT3 3'UTR 0.65 TCGA-AZ-4315-01 6 34496556 34496556 G A PACSIN1 Missense_Mutation p.A120T 0.30 tolerated(0.32) benign(0.009) TCGA-AZ-4315-01 6 34497539 34497539 T A PACSIN1 Missense_Mutation p.F237I 0.37 deleterious(0.02) possibly_damaging(0.58) TCGA-AZ-4315-01 6 34497612 34497612 A C PACSIN1 Missense_Mutation p.N261T 0.36 tolerated(0.09) benign(0) TCGA-AZ-4315-01 6 34622482 34622482 A G C6orf106 Missense_Mutation p.V78A 0.35 deleterious(0.03) possibly_damaging(0.858) TCGA-AZ-4315-01 6 34802602 34802602 G A UHRF1BP1 Silent p.T211T 0.29 TCGA-AZ-4315-01 6 348192 348192 T G DUSP22 Missense_Mutation p.V118G 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 35086183 35086183 C A TCP11 Nonsense_Mutation p.E472* 0.40 TCGA-AZ-4315-01 6 35392430 35392430 C T PPARD Missense_Mutation p.R318C 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 35424073 35424073 G A FANCE Silent p.S266S 0.26 TCGA-AZ-4315-01 6 35547912 35547912 C T FKBP5 Silent p.S309S 0.32 TCGA-AZ-4315-01 6 35558913 35558913 G A FKBP5 Silent p.F250F 0.36 TCGA-AZ-4315-01 6 35716450 35716450 G A ARMC12 Missense_Mutation p.E303K 0.37 tolerated(0.34) benign(0.053) TCGA-AZ-4315-01 6 35773512 35773512 C T LHFPL5 Missense_Mutation p.S22L 0.21 deleterious(0) benign(0.033) TCGA-AZ-4315-01 6 35773633 35773633 C T LHFPL5 Silent p.F62F 0.29 TCGA-AZ-4315-01 6 35943262 35943262 A C SLC26A8 Missense_Mutation p.L393V 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 36175192 36175192 C T BRPF3 Missense_Mutation p.R570W 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 36238410 36238410 C T PNPLA1 Silent p.I58I 0.33 TCGA-AZ-4315-01 6 36269998 36269998 A G PNPLA1 Missense_Mutation p.K379R 0.32 tolerated_low_confidence(0.76) benign(0.001) TCGA-AZ-4315-01 6 36446989 36446989 C T KCTD20 Missense_Mutation p.R176C 0.28 deleterious(0.01) benign(0.107) TCGA-AZ-4315-01 6 36767803 36767803 G A CPNE5 Silent p.F76F 0.41 TCGA-AZ-4315-01 6 36976680 36976680 G A FGD2 Missense_Mutation p.E47K 0.37 tolerated_low_confidence(0.88) benign(0.009) TCGA-AZ-4315-01 6 36981422 36981422 C T FGD2 Silent p.L189L 0.43 TCGA-AZ-4315-01 6 37250106 37250106 C T TBC1D22B Silent p.F189F 0.15 TCGA-AZ-4315-01 6 37250107 37250107 C T TBC1D22B Missense_Mutation p.R190C 0.14 tolerated(0.05) benign(0.015) TCGA-AZ-4315-01 6 37321934 37321934 G T RNF8 5'UTR 0.38 TCGA-AZ-4315-01 6 37336522 37336522 G A RNF8 Missense_Mutation p.G168D 0.36 tolerated(0.06) probably_damaging(1) TCGA-AZ-4315-01 6 37344732 37344732 G A RNF8 Missense_Mutation p.E387K 0.30 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 6 38120064 38120064 G A ZFAND3 Missense_Mutation p.D195N 0.34 tolerated(0.07) probably_damaging(0.997) TCGA-AZ-4315-01 6 38120131 38120131 G A ZFAND3 Missense_Mutation p.R217H 0.38 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 6 38757648 38757648 A C DNAH8 Missense_Mutation p.K668Q 0.34 benign(0.003) TCGA-AZ-4315-01 6 38771027 38771027 A G DNAH8 Missense_Mutation p.I775V 0.34 benign(0.001) TCGA-AZ-4315-01 6 38794014 38794014 G - DNAH8 Frame_Shift_Del p.M1095Cfs*4 0.08 TCGA-AZ-4315-01 6 38796039 38796039 C A DNAH8 Missense_Mutation p.S1171Y 0.17 possibly_damaging(0.474) TCGA-AZ-4315-01 6 38816554 38816554 G A DNAH8 Missense_Mutation p.D1509N 0.32 probably_damaging(0.994) TCGA-AZ-4315-01 6 38820568 38820568 A C DNAH8 Missense_Mutation p.K1638N 0.32 benign(0.043) TCGA-AZ-4315-01 6 38825330 38825330 G A DNAH8 Missense_Mutation p.D1707N 0.31 possibly_damaging(0.899) TCGA-AZ-4315-01 6 38840447 38840447 C T DNAH8 Missense_Mutation p.P2159S 0.31 probably_damaging(1) TCGA-AZ-4315-01 6 38851716 38851716 A C DNAH8 Missense_Mutation p.K2517T 0.33 probably_damaging(0.956) TCGA-AZ-4315-01 6 38862505 38862505 T G DNAH8 Missense_Mutation p.F2654C 0.42 probably_damaging(1) TCGA-AZ-4315-01 6 38893910 38893910 G A DNAH8 Missense_Mutation p.R3464K 0.33 probably_damaging(0.999) TCGA-AZ-4315-01 6 38899642 38899642 C A DNAH8 Missense_Mutation p.T3560N 0.38 probably_damaging(0.992) TCGA-AZ-4315-01 6 38941566 38941566 C T DNAH8 Nonsense_Mutation p.R4002* 0.31 TCGA-AZ-4315-01 6 38957791 38957791 T C DNAH8 Missense_Mutation p.W4136R 0.35 probably_damaging(0.999) TCGA-AZ-4315-01 6 38998175 38998175 T G DNAH8 3'UTR 0.33 TCGA-AZ-4315-01 6 39545839 39545839 G A KIF6 Missense_Mutation p.L392F 0.24 tolerated(0.07) benign(0.361) TCGA-AZ-4315-01 6 39832260 39832260 G A DAAM2 Missense_Mutation p.D104N 0.19 tolerated(0.07) benign(0.237) TCGA-AZ-4315-01 6 39839297 39839297 C T DAAM2 Silent p.F331F 0.31 TCGA-AZ-4315-01 6 39864966 39864966 C T DAAM2 Silent p.L842L 0.26 TCGA-AZ-4315-01 6 39867916 39867916 G A DAAM2 Missense_Mutation p.D915N 0.31 tolerated(0.13) probably_damaging(0.997) TCGA-AZ-4315-01 6 39874787 39874787 C T MOCS1 3'UTR 0.50 TCGA-AZ-4315-01 6 4032669 4032669 G A PRPF4B Silent p.R306R 0.33 TCGA-AZ-4315-01 6 41011296 41011296 C T TSPO2 Silent p.G58G 0.43 TCGA-AZ-4315-01 6 41029488 41029488 G A APOBEC2 Missense_Mutation p.E185K 0.40 tolerated(0.92) possibly_damaging(0.727) TCGA-AZ-4315-01 6 41034946 41034946 T G OARD1 3'UTR 0.41 TCGA-AZ-4315-01 6 41035157 41035157 G A OARD1 Missense_Mutation p.R126C 0.29 deleterious(0.01) possibly_damaging(0.774) TCGA-AZ-4315-01 6 41165918 41165918 C T TREML2 Missense_Mutation p.R102Q 0.23 deleterious(0.01) possibly_damaging(0.883) TCGA-AZ-4315-01 6 41248705 41248705 A G TREM1 Missense_Mutation p.I198T 0.30 deleterious(0.01) benign(0.158) TCGA-AZ-4315-01 6 41743219 41743219 C T FRS3 Missense_Mutation p.R64H 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 41743259 41743259 G A FRS3 Missense_Mutation p.R51W 0.26 deleterious(0) possibly_damaging(0.879) TCGA-AZ-4315-01 6 41889060 41889060 G T BYSL 5'UTR 0.55 TCGA-AZ-4315-01 6 42019144 42019144 C T TAF8 Missense_Mutation p.A32V 0.24 deleterious(0.03) benign(0.077) TCGA-AZ-4315-01 6 42579958 42579958 C T UBR2 Missense_Mutation p.S305L 0.37 deleterious(0) possibly_damaging(0.475) TCGA-AZ-4315-01 6 42652542 42652542 G A UBR2 Missense_Mutation p.E1596K 0.19 tolerated(1) benign(0.002) TCGA-AZ-4315-01 6 42906314 42906314 G A CNPY3 Missense_Mutation p.A208T 0.33 tolerated(0.59) benign(0.001) TCGA-AZ-4315-01 6 42986617 42986617 A C KLHDC3 Missense_Mutation p.K279N 0.37 tolerated(0.5) benign(0.139) TCGA-AZ-4315-01 6 42986629 42986629 G A KLHDC3 Silent p.P283P 0.43 TCGA-AZ-4315-01 6 43152466 43152466 G A CUL9 Missense_Mutation p.A140T 0.28 deleterious(0.04) benign(0.171) TCGA-AZ-4315-01 6 43188604 43188604 C T CUL9 Silent p.C2181C 0.37 TCGA-AZ-4315-01 6 43271899 43271899 G A SLC22A7 Silent p.L503L 0.31 TCGA-AZ-4315-01 6 43323670 43323670 C A ZNF318 Nonsense_Mutation p.E468* 0.29 TCGA-AZ-4315-01 6 44141093 44141093 G A CAPN11 Silent p.E267E 0.44 TCGA-AZ-4315-01 6 44218888 44218888 A C HSP90AB1 Missense_Mutation p.K354T 0.25 deleterious(0) possibly_damaging(0.664) TCGA-AZ-4315-01 6 44413560 44413560 G T CDC5L Nonsense_Mutation p.E754* 0.32 TCGA-AZ-4315-01 6 45296220 45296220 C T RUNX2 5'UTR 0.12 TCGA-AZ-4315-01 6 45390307 45390307 T C RUNX2 Intron 0.16 TCGA-AZ-4315-01 6 45390661 45390661 G T RUNX2 Missense_Mutation p.W130C 0.39 deleterious(0) probably_damaging(0.944) TCGA-AZ-4315-01 6 46111463 46111463 G T ENPP4 3'UTR 0.43 TCGA-AZ-4315-01 6 46293188 46293188 A G RCAN2 Intron 0.34 TCGA-AZ-4315-01 6 46517962 46517962 G T CYP39A1 3'UTR 0.41 TCGA-AZ-4315-01 6 46563780 46563780 G A CYP39A1 Missense_Mutation p.R337C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 46607386 46607386 G T CYP39A1 Silent p.V111V 0.28 TCGA-AZ-4315-01 6 46609998 46609998 C T CYP39A1 Missense_Mutation p.R72Q 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 6 46644210 46644210 C A SLC25A27 3'UTR 0.41 TCGA-AZ-4315-01 6 46659945 46659945 T C TDRD6 Silent p.C1360C 0.31 TCGA-AZ-4315-01 6 46660982 46660982 C T TDRD6 Missense_Mutation p.A1706V 0.09 tolerated(0.21) benign(0.028) TCGA-AZ-4315-01 6 46663671 46663671 G A TDRD6 Missense_Mutation p.E2054K 0.35 tolerated(0.26) benign(0.145) TCGA-AZ-4315-01 6 46684166 46684166 G T PLA2G7 Missense_Mutation p.L111I 0.32 tolerated(0.09) benign(0.146) TCGA-AZ-4315-01 6 46856075 46856075 T C GPR116 Missense_Mutation p.T109A 0.34 deleterious(0.02) benign(0.32) TCGA-AZ-4315-01 6 46874472 46874472 A G GPR116 Missense_Mutation p.C10R 0.33 deleterious(0.03) possibly_damaging(0.646) TCGA-AZ-4315-01 6 46976719 46976719 C T GPR110 Missense_Mutation p.A818T 0.27 tolerated(0.07) benign(0.415) TCGA-AZ-4315-01 6 46988506 46988506 C A GPR110 Missense_Mutation p.R191I 0.12 tolerated(0.29) benign(0.446) TCGA-AZ-4315-01 6 47650400 47650400 G T GPR111 Missense_Mutation p.R702I 0.35 deleterious_low_confidence(0.02) benign(0.001) TCGA-AZ-4315-01 6 47682570 47682570 C T GPR115 Missense_Mutation p.A530V 0.34 deleterious(0) probably_damaging(0.963) TCGA-AZ-4315-01 6 47846410 47846410 A C PTCHD4 Missense_Mutation p.F724V 0.32 deleterious(0.01) probably_damaging(0.977) TCGA-AZ-4315-01 6 47847192 47847192 A C PTCHD4 Missense_Mutation p.V463G 0.38 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 6 49585820 49585820 G T RHAG Missense_Mutation p.F151L 0.19 tolerated(1) benign(0.002) TCGA-AZ-4315-01 6 49698938 49698938 A G CRISP3 Missense_Mutation p.V206A 0.25 deleterious(0.02) benign(0.006) TCGA-AZ-4315-01 6 49754905 49754905 A G PGK2 5'UTR 0.28 TCGA-AZ-4315-01 6 49976860 49976860 G A DEFB110 Silent p.C60C 0.26 TCGA-AZ-4315-01 6 49989678 49989678 A G DEFB110 5'UTR 0.28 TCGA-AZ-4315-01 6 50696930 50696930 G A TFAP2D Missense_Mutation p.R263H 0.35 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 6 50740623 50740623 T G TFAP2D 3'UTR 0.27 TCGA-AZ-4315-01 6 50811148 50811148 G T TFAP2B 3'UTR 0.15 TCGA-AZ-4315-01 6 51619720 51619720 C T PKHD1 Missense_Mutation p.A2887T 0.33 tolerated(0.55) benign(0.005) TCGA-AZ-4315-01 6 51720865 51720865 C T PKHD1 Silent p.A2579A 0.38 TCGA-AZ-4315-01 6 51732698 51732698 C A PKHD1 Nonsense_Mutation p.G2566* 0.30 TCGA-AZ-4315-01 6 51889505 51889505 A G PKHD1 Silent p.V1701V 0.29 TCGA-AZ-4315-01 6 51889953 51889953 A G PKHD1 Missense_Mutation p.V1552A 0.24 tolerated(0.22) benign(0.03) TCGA-AZ-4315-01 6 51924796 51924796 T C PKHD1 Missense_Mutation p.Y388C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 52101829 52101829 C T IL17F Missense_Mutation p.R131Q 0.24 tolerated(0.06) probably_damaging(0.918) TCGA-AZ-4315-01 6 52269984 52269984 G A PAQR8 3'UTR 0.43 TCGA-AZ-4315-01 6 52271846 52271846 A C PAQR8 3'UTR 0.36 TCGA-AZ-4315-01 6 52621071 52621071 C T GSTA2 Missense_Mutation p.D42N 0.43 deleterious(0.02) benign(0.002) TCGA-AZ-4315-01 6 52656506 52656506 G A GSTA1 3'UTR 0.35 TCGA-AZ-4315-01 6 52701116 52701116 T C GSTA5 Missense_Mutation p.K64E 0.22 deleterious(0.03) possibly_damaging(0.861) TCGA-AZ-4315-01 6 53139983 53139983 T G ELOVL5 Missense_Mutation p.K161T 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 54219310 54219310 G T TINAG Splice_Site p.X376_splice 0.40 TCGA-AZ-4315-01 6 54219333 54219333 T A TINAG Missense_Mutation p.D383E 0.24 deleterious(0) possibly_damaging(0.905) TCGA-AZ-4315-01 6 55113456 55113456 G A HCRTR2 Silent p.K81K 0.34 TCGA-AZ-4315-01 6 55128616 55128616 G A HCRTR2 Missense_Mutation p.R253Q 0.33 tolerated(0.49) benign(0.028) TCGA-AZ-4315-01 6 55360281 55360281 G A HMGCLL1 Missense_Mutation p.A274V 0.26 tolerated(0.06) probably_damaging(1) TCGA-AZ-4315-01 6 55932118 55932118 C T COL21A1 Missense_Mutation p.G701E 0.36 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 6 56021691 56021691 A G COL21A1 Silent p.G476G 0.35 TCGA-AZ-4315-01 6 56328540 56328540 T G DST Missense_Mutation p.E4947D 0.26 probably_damaging(0.98) TCGA-AZ-4315-01 6 56357106 56357106 T C DST Silent p.V4269V 0.25 TCGA-AZ-4315-01 6 56417104 56417104 C A DST Nonsense_Mutation p.E2873* 0.35 TCGA-AZ-4315-01 6 56417396 56417396 G A DST Silent p.F2775F 0.35 TCGA-AZ-4315-01 6 56434652 56434652 A G DST Splice_Site p.X2003_splice 0.31 TCGA-AZ-4315-01 6 56462687 56462687 C T DST Missense_Mutation p.E1393K 0.37 benign(0.013) TCGA-AZ-4315-01 6 56468781 56468781 C A DST Intron 0.26 TCGA-AZ-4315-01 6 56473158 56473158 C A DST Intron 0.26 TCGA-AZ-4315-01 6 56481342 56481342 C T DST Intron 0.29 TCGA-AZ-4315-01 6 56481789 56481789 C A DST Intron 0.33 TCGA-AZ-4315-01 6 56566757 56566757 C A DST Nonsense_Mutation p.E84* 0.32 TCGA-AZ-4315-01 6 56716204 56716204 G A RP11-472M19.2 Intron 0.23 TCGA-AZ-4315-01 6 56846723 56846723 G T BEND6 Nonsense_Mutation p.G39* 0.34 TCGA-AZ-4315-01 6 56915605 56915605 G A KIAA1586 Missense_Mutation p.D47N 0.31 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-AZ-4315-01 6 56966436 56966436 G T ZNF451 Intron 0.32 TCGA-AZ-4315-01 6 57006863 57006863 G A ZNF451 Missense_Mutation p.R325H 0.41 tolerated(0.15) benign(0.016) TCGA-AZ-4315-01 6 617829 617829 C T EXOC2 Silent p.E181E 0.60 TCGA-AZ-4315-01 6 62442602 62442602 G A KHDRBS2 Missense_Mutation p.A293V 0.22 tolerated(0.08) benign(0.015) TCGA-AZ-4315-01 6 62688064 62688064 C T KHDRBS2 Silent p.E130E 0.33 TCGA-AZ-4315-01 6 63989721 63989721 A G LGSN 3'UTR 0.33 TCGA-AZ-4315-01 6 64436489 64436489 T G EYS Missense_Mutation p.H2719P 0.26 tolerated(0.14) possibly_damaging(0.785) TCGA-AZ-4315-01 6 64498062 64498062 A G EYS Silent p.G2553G 0.41 TCGA-AZ-4315-01 6 65149062 65149062 G T EYS Missense_Mutation p.T1943N 0.38 tolerated(0.19) probably_damaging(0.933) TCGA-AZ-4315-01 6 65300456 65300456 A C EYS Missense_Mutation p.N1768K 0.30 deleterious_low_confidence(0.05) benign(0.018) TCGA-AZ-4315-01 6 65336103 65336103 A C EYS Missense_Mutation p.I1160S 0.30 deleterious(0.02) benign(0.102) TCGA-AZ-4315-01 6 66005908 66005908 G A EYS Missense_Mutation p.S624L 0.38 tolerated(1) benign(0) TCGA-AZ-4315-01 6 66204961 66204961 C T EYS Missense_Mutation p.V115M 0.30 tolerated_low_confidence(0.14) benign(0.025) TCGA-AZ-4315-01 6 69785919 69785919 T C BAI3 Silent p.D823D 0.41 TCGA-AZ-4315-01 6 71003883 71003883 T G COL9A1 Missense_Mutation p.Q228P 0.41 unknown(0) TCGA-AZ-4315-01 6 71004213 71004213 C T COL9A1 Missense_Mutation p.R118Q 0.38 unknown(0) TCGA-AZ-4315-01 6 71191746 71191746 T C FAM135A Missense_Mutation p.Y238H 0.22 tolerated(0.3) benign(0.033) TCGA-AZ-4315-01 6 72889449 72889449 C T RIMS1 Nonsense_Mutation p.R215* 0.28 TCGA-AZ-4315-01 6 72945382 72945382 A G RIMS1 Missense_Mutation p.N603S 0.29 tolerated(0.38) possibly_damaging(0.644) TCGA-AZ-4315-01 6 7299013 7299013 A C SSR1 Missense_Mutation p.V196G 0.43 deleterious(0) possibly_damaging(0.723) TCGA-AZ-4315-01 6 73043435 73043435 T C RIMS1 Silent p.G1421G 0.28 TCGA-AZ-4315-01 6 7373437 7373437 C T CAGE1 Missense_Mutation p.E539K 0.34 tolerated(0.38) probably_damaging(0.956) TCGA-AZ-4315-01 6 73904501 73904501 C T KCNQ5 Silent p.S740S 0.32 TCGA-AZ-4315-01 6 74107414 74107414 C T DDX43 Missense_Mutation p.R85C 0.09 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 6 74107450 74107450 A G DDX43 Missense_Mutation p.T97A 0.19 deleterious(0.01) possibly_damaging(0.824) TCGA-AZ-4315-01 6 74109993 74109993 T G DDX43 Missense_Mutation p.F115V 0.32 deleterious(0.02) possibly_damaging(0.794) TCGA-AZ-4315-01 6 74345221 74345221 T C SLC17A5 Missense_Mutation p.T235A 0.42 tolerated(1) benign(0.001) TCGA-AZ-4315-01 6 74475730 74475730 G T CD109 Missense_Mutation p.Q395H 0.29 deleterious(0.01) benign(0.065) TCGA-AZ-4315-01 6 74475732 74475732 G T CD109 Missense_Mutation p.R396I 0.30 deleterious(0.03) benign(0.017) TCGA-AZ-4315-01 6 74477917 74477917 T C CD109 Missense_Mutation p.V546A 0.29 tolerated(0.87) benign(0.006) TCGA-AZ-4315-01 6 7581472 7581472 G A DSP Silent p.E1683E 0.33 TCGA-AZ-4315-01 6 7583582 7583582 C T DSP Silent p.Y2029Y 0.36 TCGA-AZ-4315-01 6 75860972 75860972 C A COL12A1 Missense_Mutation p.K1344N 0.27 possibly_damaging(0.569) TCGA-AZ-4315-01 6 75875478 75875478 C A COL12A1 Missense_Mutation p.D910Y 0.36 possibly_damaging(0.583) TCGA-AZ-4315-01 6 75969072 75969072 G A TMEM30A Nonsense_Mutation p.R226* 0.30 TCGA-AZ-4315-01 6 75974988 75974988 G A TMEM30A Nonsense_Mutation p.R138* 0.18 TCGA-AZ-4315-01 6 76022914 76022914 G A FILIP1 Silent p.N878N 0.31 TCGA-AZ-4315-01 6 76023351 76023351 C T FILIP1 Missense_Mutation p.E733K 0.36 tolerated(0.09) possibly_damaging(0.856) TCGA-AZ-4315-01 6 76023721 76023721 T G FILIP1 Missense_Mutation p.E609D 0.36 tolerated(0.39) benign(0.002) TCGA-AZ-4315-01 6 76023900 76023900 C A FILIP1 Nonsense_Mutation p.E550* 0.32 TCGA-AZ-4315-01 6 7609119 7609119 T C SNRNP48 3'UTR 0.40 TCGA-AZ-4315-01 6 78172796 78172796 A G HTR1B Missense_Mutation p.Y109H 0.27 deleterious(0) probably_damaging(0.91) TCGA-AZ-4315-01 6 79680570 79680570 G A PHIP Silent p.V975V 0.39 TCGA-AZ-4315-01 6 79725475 79725475 T G PHIP Missense_Mutation p.K421Q 0.30 deleterious(0.04) probably_damaging(0.977) TCGA-AZ-4315-01 6 80196803 80196803 C T LCA5 Missense_Mutation p.R671Q 0.07 tolerated(0.07) benign(0.081) TCGA-AZ-4315-01 6 80201340 80201340 C T LCA5 Missense_Mutation p.E355K 0.32 tolerated(0.09) benign(0.271) TCGA-AZ-4315-01 6 80203349 80203349 C T LCA5 Missense_Mutation p.R280Q 0.42 tolerated(0.83) benign(0.025) TCGA-AZ-4315-01 6 80636093 80636093 G A ELOVL4 Missense_Mutation p.R36C 0.38 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 82461336 82461336 T C FAM46A Missense_Mutation p.K175E 0.31 deleterious(0) possibly_damaging(0.794) TCGA-AZ-4315-01 6 82911187 82911187 A C IBTK Silent p.V914V 0.32 TCGA-AZ-4315-01 6 82923966 82923966 C T IBTK Missense_Mutation p.D728N 0.29 deleterious(0.05) benign(0.016) TCGA-AZ-4315-01 6 82943942 82943942 C T IBTK Missense_Mutation p.E118K 0.21 deleterious(0.01) benign(0.158) TCGA-AZ-4315-01 6 83075541 83075541 G T TPBG Missense_Mutation p.R288M 0.33 deleterious(0) possibly_damaging(0.687) TCGA-AZ-4315-01 6 83667051 83667051 G A UBE3D Missense_Mutation p.R377C 0.31 deleterious(0.01) benign(0.377) TCGA-AZ-4315-01 6 83839060 83839060 C A DOPEY1 Nonsense_Mutation p.S725* 0.32 TCGA-AZ-4315-01 6 83847733 83847733 C T DOPEY1 Silent p.F1324F 0.23 TCGA-AZ-4315-01 6 83848635 83848635 C A DOPEY1 Missense_Mutation p.S1625Y 0.31 deleterious(0) probably_damaging(0.974) TCGA-AZ-4315-01 6 83851667 83851667 T G DOPEY1 Missense_Mutation p.L1815V 0.35 deleterious(0) possibly_damaging(0.862) TCGA-AZ-4315-01 6 83861380 83861380 T G DOPEY1 Splice_Site p.X1968_splice 0.27 TCGA-AZ-4315-01 6 83921482 83921482 T G ME1 3'UTR 0.35 TCGA-AZ-4315-01 6 84061836 84061836 C T ME1 Missense_Mutation p.D129N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 6 84234148 84234148 G A PRSS35 Missense_Mutation p.E330K 0.29 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 6 84234981 84234981 G T PRSS35 3'UTR 0.33 TCGA-AZ-4315-01 6 84303270 84303270 G T SNAP91 Silent p.A541A 0.36 TCGA-AZ-4315-01 6 84417642 84417642 G A SNAP91 Missense_Mutation p.S2L 0.45 deleterious(0) unknown(0) TCGA-AZ-4315-01 6 84563065 84563065 C A RIPPLY2 5'UTR 0.44 TCGA-AZ-4315-01 6 85466461 85466461 G A TBX18 Silent p.F242F 0.28 TCGA-AZ-4315-01 6 85473770 85473770 C T TBX18 Missense_Mutation p.E44K 0.22 deleterious(0.05) benign(0.005) TCGA-AZ-4315-01 6 87725710 87725710 C T HTR1E Missense_Mutation p.R220W 0.24 deleterious(0) possibly_damaging(0.632) TCGA-AZ-4315-01 6 87725884 87725884 C T HTR1E Missense_Mutation p.R278C 0.29 deleterious(0) probably_damaging(0.973) TCGA-AZ-4315-01 6 87964995 87964995 G T ZNF292 Nonsense_Mutation p.E550* 0.22 TCGA-AZ-4315-01 6 87967471 87967471 T G ZNF292 Missense_Mutation p.F1375C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 6 87967540 87967540 C T ZNF292 Missense_Mutation p.S1398F 0.25 deleterious(0) possibly_damaging(0.864) TCGA-AZ-4315-01 6 87967866 87967866 G A ZNF292 Missense_Mutation p.E1507K 0.27 tolerated_low_confidence(0.18) benign(0.022) TCGA-AZ-4315-01 6 87970420 87970420 C A ZNF292 Missense_Mutation p.S2358Y 0.36 deleterious(0.03) probably_damaging(0.99) TCGA-AZ-4315-01 6 87994100 87994100 C T GJB7 Silent p.T177T 0.29 TCGA-AZ-4315-01 6 88049844 88049844 T G SMIM8 Missense_Mutation p.V49G 0.31 deleterious(0) possibly_damaging(0.888) TCGA-AZ-4315-01 6 88255415 88255415 T G RARS2 Missense_Mutation p.N152H 0.31 deleterious(0.03) probably_damaging(1) TCGA-AZ-4315-01 6 88311549 88311549 C T ORC3 Nonsense_Mutation p.R43* 0.36 TCGA-AZ-4315-01 6 88372822 88372822 C T ORC3 Missense_Mutation p.A599V 0.35 deleterious(0.04) possibly_damaging(0.828) TCGA-AZ-4315-01 6 88776009 88776009 G T SPACA1 Nonsense_Mutation p.E281* 0.29 TCGA-AZ-4315-01 6 89322264 89322264 G A RNGTT 3'UTR 0.24 TCGA-AZ-4315-01 6 89554165 89554165 C T RNGTT Missense_Mutation p.E394K 0.24 tolerated(0.41) benign(0.011) TCGA-AZ-4315-01 6 89899885 89899885 G T GABRR1 Missense_Mutation p.S218R 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 6 90077906 90077906 G T RRAGD Missense_Mutation p.H358N 0.30 tolerated(0.54) benign(0.008) TCGA-AZ-4315-01 6 90346951 90346951 A C LYRM2 3'UTR 0.17 TCGA-AZ-4315-01 6 90385878 90385878 A C MDN1 Missense_Mutation p.F4196L 0.31 benign(0.327) TCGA-AZ-4315-01 6 90398302 90398302 G A MDN1 Missense_Mutation p.A3750V 0.33 benign(0.067) TCGA-AZ-4315-01 6 90435002 90435002 C T MDN1 Silent p.T1862T 0.34 TCGA-AZ-4315-01 6 90450000 90450000 G A MDN1 Missense_Mutation p.R1516C 0.28 possibly_damaging(0.625) TCGA-AZ-4315-01 6 90573528 90573528 A G CASP8AP2 RNA 0.32 TCGA-AZ-4315-01 6 90577076 90577076 C T CASP8AP2 RNA 0.51 TCGA-AZ-4315-01 6 90660099 90660099 G A BACH2 Missense_Mutation p.R576W 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 6 93953228 93953228 A G EPHA7 Silent p.V971V 0.23 TCGA-AZ-4315-01 6 93956552 93956552 C T EPHA7 Missense_Mutation p.R895Q 0.34 tolerated(0.13) benign(0.01) TCGA-AZ-4315-01 6 96651717 96651717 A C FUT9 Missense_Mutation p.K229T 0.28 tolerated(0.18) benign(0.038) TCGA-AZ-4315-01 6 96651865 96651865 G T FUT9 Missense_Mutation p.E278D 0.25 deleterious(0.01) possibly_damaging(0.85) TCGA-AZ-4315-01 6 96652093 96652093 G T FUT9 Missense_Mutation p.E354D 0.28 tolerated(0.89) benign(0.01) TCGA-AZ-4315-01 6 96657415 96657416 - A FUT9 3'UTR 0.25 TCGA-AZ-4315-01 6 96660068 96660068 C T FUT9 3'UTR 0.12 TCGA-AZ-4315-01 6 96660420 96660420 G T FUT9 3'UTR 0.33 TCGA-AZ-4315-01 6 96661132 96661132 C A FUT9 3'UTR 0.28 TCGA-AZ-4315-01 6 96661165 96661165 G T FUT9 3'UTR 0.28 TCGA-AZ-4315-01 6 96661842 96661842 C T FUT9 3'UTR 0.25 TCGA-AZ-4315-01 6 96663279 96663279 T C FUT9 3'UTR 0.30 TCGA-AZ-4315-01 6 97063553 97063553 A C FHL5 Missense_Mutation p.K254Q 0.39 tolerated(0.21) possibly_damaging(0.745) TCGA-AZ-4315-01 6 97676828 97676828 G A MMS22L Nonsense_Mutation p.R661* 0.35 TCGA-AZ-4315-01 6 99283806 99283806 C T POU3F2 Missense_Mutation p.R353C 0.44 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 6 99284898 99284898 C A POU3F2 3'UTR 0.33 TCGA-AZ-4315-01 6 99286481 99286481 C T POU3F2 3'UTR 0.40 TCGA-AZ-4315-01 6 99347335 99347335 C T FBXL4 Missense_Mutation p.E376K 0.30 tolerated(0.34) benign(0.002) TCGA-AZ-4315-01 6 99848384 99848384 T A PNISR 3'UTR 0.40 TCGA-AZ-4315-01 6 99856112 99856112 G A PNISR Missense_Mutation p.R237C 0.41 tolerated(0.06) benign(0.246) TCGA-AZ-4315-01 7 100229790 100229790 C T TFR2 Missense_Mutation p.G294E 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 100282710 100282710 C A GIGYF1 Missense_Mutation p.D418Y 0.26 deleterious(0) unknown(0) TCGA-AZ-4315-01 7 100348394 100348394 G A ZAN Missense_Mutation p.E466K 0.41 benign(0.064) TCGA-AZ-4315-01 7 100490027 100490027 C T ACHE Missense_Mutation p.R494Q 0.25 tolerated(0.12) benign(0.04) TCGA-AZ-4315-01 7 100685901 100685901 C A MUC17 Missense_Mutation p.S3735Y 0.27 benign(0.009) TCGA-AZ-4315-01 7 100780830 100780830 G T SERPINE1 3'UTR 0.19 TCGA-AZ-4315-01 7 100799954 100799954 G A AP1S1 Missense_Mutation p.R28Q 0.36 deleterious(0) benign(0.157) TCGA-AZ-4315-01 7 100808097 100808097 C T VGF Missense_Mutation p.A10T 0.36 tolerated_low_confidence(0.27) benign(0.127) TCGA-AZ-4315-01 7 100961412 100961412 C T RABL5 Missense_Mutation p.D67N 0.40 tolerated(0.09) benign(0.113) TCGA-AZ-4315-01 7 101183244 101183244 C A COL26A1 Missense_Mutation p.P173Q 0.23 deleterious(0.04) benign(0.021) TCGA-AZ-4315-01 7 101842125 101842125 G A CUX1 Silent p.P657P 0.33 TCGA-AZ-4315-01 7 101916707 101916707 C T CUX1 Silent p.I440I 0.28 TCGA-AZ-4315-01 7 102518815 102518815 G A FBXL13 Missense_Mutation p.R491W 0.27 tolerated(0.11) benign(0.012) TCGA-AZ-4315-01 7 102574957 102574957 A C LRRC17 Missense_Mutation p.K199N 0.31 deleterious(0.01) possibly_damaging(0.511) TCGA-AZ-4315-01 7 102836034 102836034 G A DPY19L2P2 RNA 0.28 TCGA-AZ-4315-01 7 102963177 102963177 C T DNAJC2 Missense_Mutation p.E262K 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-4315-01 7 102978112 102978112 T C DNAJC2 Intron 0.34 TCGA-AZ-4315-01 7 103006538 103006538 C T PSMC2 Missense_Mutation p.R258C 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 103033445 103033445 G A SLC26A5 Missense_Mutation p.A347V 0.29 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 7 103051903 103051903 G A SLC26A5 Silent p.V178V 0.33 TCGA-AZ-4315-01 7 103051978 103051978 T G SLC26A5 Silent p.P153P 0.32 TCGA-AZ-4315-01 7 103230055 103230055 G A RELN Missense_Mutation p.S1378F 0.30 deleterious(0.01) probably_damaging(0.957) TCGA-AZ-4315-01 7 103969325 103969325 C T LHFPL3 Missense_Mutation p.S33L 0.36 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 7 104719376 104719376 G A KMT2E Missense_Mutation p.R405Q 0.36 deleterious(0) possibly_damaging(0.553) TCGA-AZ-4315-01 7 104732006 104732006 A C KMT2E Intron 0.47 TCGA-AZ-4315-01 7 104747076 104747076 G A KMT2E Missense_Mutation p.D902N 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.555) TCGA-AZ-4315-01 7 104753708 104753708 A C KMT2E Silent p.G1835G 0.37 TCGA-AZ-4315-01 7 105660967 105660967 C A CDHR3 Missense_Mutation p.S601Y 0.32 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 7 106523497 106523497 A C PIK3CG Missense_Mutation p.K883N 0.21 deleterious(0.04) possibly_damaging(0.646) TCGA-AZ-4315-01 7 107002789 107002789 C A COG5 Missense_Mutation p.E335D 0.28 tolerated(0.13) possibly_damaging(0.598) TCGA-AZ-4315-01 7 107053002 107053002 C T COG5 Missense_Mutation p.R236Q 0.27 tolerated(0.05) possibly_damaging(0.891) TCGA-AZ-4315-01 7 107167688 107167688 C A COG5 Nonsense_Mutation p.E209* 0.32 TCGA-AZ-4315-01 7 107215741 107215741 T G DUS4L Silent p.V155V 0.36 TCGA-AZ-4315-01 7 107335146 107335146 G A SLC26A4 Silent p.Q474Q 0.26 TCGA-AZ-4315-01 7 107340590 107340590 C T SLC26A4 Silent p.V559V 0.32 TCGA-AZ-4315-01 7 107704411 107704411 G A LAMB4 Silent p.C952C 0.36 TCGA-AZ-4315-01 7 108112860 108112860 G T PNPLA8 Missense_Mutation p.F778L 0.29 tolerated(0.07) benign(0.302) TCGA-AZ-4315-01 7 108155883 108155883 C A PNPLA8 Missense_Mutation p.R18I 0.34 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-AZ-4315-01 7 11053384 11053384 A G PHF14 Silent p.G352G 0.26 TCGA-AZ-4315-01 7 110764122 110764122 C A LRRN3 Missense_Mutation p.L432I 0.36 tolerated(0.28) benign(0.02) TCGA-AZ-4315-01 7 110765075 110765075 C T LRRN3 3'UTR 0.29 TCGA-AZ-4315-01 7 111407094 111407094 C A DOCK4 Missense_Mutation p.K1294N 0.33 tolerated(0.5) possibly_damaging(0.694) TCGA-AZ-4315-01 7 111982702 111982702 A G ZNF277 Missense_Mutation p.E424G 0.26 tolerated(0.23) benign(0) TCGA-AZ-4315-01 7 112407720 112407720 G A TMEM168 Silent p.I542I 0.34 TCGA-AZ-4315-01 7 112462262 112462262 G A C7orf60 Missense_Mutation p.S252F 0.25 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 7 112724153 112724153 G A GPR85 Silent p.F208F 0.26 TCGA-AZ-4315-01 7 112724396 112724396 G A GPR85 Silent p.R127R 0.36 TCGA-AZ-4315-01 7 1131854 1131854 C T GPER1 Missense_Mutation p.R164C 0.30 deleterious(0.02) probably_damaging(0.93) TCGA-AZ-4315-01 7 113517881 113517881 A G PPP1R3A Missense_Mutation p.V1089A 0.37 deleterious(0.01) benign(0.021) TCGA-AZ-4315-01 7 113518905 113518905 C A PPP1R3A Nonsense_Mutation p.E748* 0.26 TCGA-AZ-4315-01 7 113519666 113519666 G A PPP1R3A Missense_Mutation p.S494L 0.31 tolerated(0.64) benign(0.053) TCGA-AZ-4315-01 7 114268598 114268598 C T FOXP2 Missense_Mutation p.P113S 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 7 114270054 114270054 G A FOXP2 Silent p.A222A 0.40 TCGA-AZ-4315-01 7 114562994 114562994 C A MDFIC Missense_Mutation p.S78Y 0.21 deleterious_low_confidence(0) benign(0.013) TCGA-AZ-4315-01 7 11485784 11485784 C A THSD7A Missense_Mutation p.D990Y 0.30 deleterious(0) probably_damaging(0.976) TCGA-AZ-4315-01 7 115580454 115580454 G A TFEC 3'UTR 0.33 TCGA-AZ-4315-01 7 115590979 115590979 A G TFEC Missense_Mutation p.I155T 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 11581238 11581238 G A THSD7A Missense_Mutation p.R544C 0.39 deleterious(0.01) possibly_damaging(0.582) TCGA-AZ-4315-01 7 115874657 115874657 G A TES Missense_Mutation p.E33K 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4315-01 7 116380910 116380910 C T MET Missense_Mutation p.T511M 0.32 deleterious(0.03) probably_damaging(0.935) TCGA-AZ-4315-01 7 116418997 116418997 C T MET Nonsense_Mutation p.R1188* 0.09 TCGA-AZ-4315-01 7 11675935 11675935 C A THSD7A Nonsense_Mutation p.E282* 0.30 TCGA-AZ-4315-01 7 11676372 11676372 A C THSD7A Missense_Mutation p.I136S 0.27 tolerated(0.44) benign(0.044) TCGA-AZ-4315-01 7 116769862 116769862 G A ST7 Missense_Mutation p.R137Q 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-AZ-4315-01 7 117227813 117227813 G T CFTR Missense_Mutation p.E535D 0.28 tolerated(0.53) benign(0) TCGA-AZ-4315-01 7 117246747 117246747 C A CFTR Missense_Mutation p.F976L 0.29 deleterious(0.01) probably_damaging(0.958) TCGA-AZ-4315-01 7 117251805 117251805 G T CFTR Nonsense_Mutation p.E1104* 0.35 TCGA-AZ-4315-01 7 117420626 117420626 A G CTTNBP2 Missense_Mutation p.S798P 0.47 deleterious(0.05) benign(0.167) TCGA-AZ-4315-01 7 117431283 117431283 A C CTTNBP2 Missense_Mutation p.L656R 0.35 deleterious(0.04) possibly_damaging(0.568) TCGA-AZ-4315-01 7 117432148 117432148 C T CTTNBP2 Missense_Mutation p.A368T 0.29 tolerated(0.15) benign(0.001) TCGA-AZ-4315-01 7 120607994 120607994 G A ING3 Missense_Mutation p.R188Q 0.23 tolerated(0.2) probably_damaging(0.945) TCGA-AZ-4315-01 7 120782080 120782080 T C CPED1 Missense_Mutation p.V647A 0.22 tolerated(0.06) benign(0.007) TCGA-AZ-4315-01 7 120979103 120979103 C T WNT16 Missense_Mutation p.R268C 0.21 deleterious(0) probably_damaging(0.946) TCGA-AZ-4315-01 7 121758662 121758662 T C AASS Silent p.G165G 0.35 TCGA-AZ-4315-01 7 122377044 122377044 C T CADPS2 Missense_Mutation p.E140K 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 7 123143160 123143160 T G IQUB Missense_Mutation p.Q235H 0.40 tolerated(0.15) benign(0.004) TCGA-AZ-4315-01 7 123257756 123257757 - A ASB15 Frame_Shift_Ins p.N141Kfs*2 0.23 TCGA-AZ-4315-01 7 123270021 123270021 T G ASB15 Missense_Mutation p.F481C 0.33 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 7 123301952 123301952 C A LMOD2 Silent p.I104I 0.10 TCGA-AZ-4315-01 7 123349174 123349174 C A WASL Missense_Mutation p.R74I 0.29 deleterious(0) unknown(0) TCGA-AZ-4315-01 7 123593564 123593564 T C SPAM1 5'UTR 0.38 TCGA-AZ-4315-01 7 123599570 123599570 G A SPAM1 Silent p.E359E 0.38 TCGA-AZ-4315-01 7 123671858 123671858 C T TMEM229A 3'UTR 0.40 TCGA-AZ-4315-01 7 12375800 12375800 G A VWDE Missense_Mutation p.P1541S 0.36 tolerated(0.19) benign(0.443) TCGA-AZ-4315-01 7 12384023 12384023 T C VWDE Missense_Mutation p.Y1320C 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 7 12410358 12410358 T G VWDE Missense_Mutation p.N574H 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 12420183 12420183 T C VWDE Missense_Mutation p.T240A 0.40 deleterious(0.01) benign(0.005) TCGA-AZ-4315-01 7 126173525 126173525 A C GRM8 Missense_Mutation p.F637L 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-AZ-4315-01 7 126173567 126173567 G A GRM8 Silent p.Y623Y 0.35 TCGA-AZ-4315-01 7 126544157 126544157 T G GRM8 Missense_Mutation p.K296T 0.37 deleterious(0.01) benign(0.089) TCGA-AZ-4315-01 7 12664721 12664721 C T SCIN Silent p.C282C 0.23 TCGA-AZ-4315-01 7 127225213 127225213 G A GCC1 Silent p.F8F 0.34 TCGA-AZ-4315-01 7 127234913 127234913 T A FSCN3 Intron 0.29 TCGA-AZ-4315-01 7 127235420 127235420 C T FSCN3 Silent p.S68S 0.26 TCGA-AZ-4315-01 7 127255594 127255594 G A PAX4 5'UTR 0.44 TCGA-AZ-4315-01 7 127527952 127527952 C T SND1 Intron 0.25 TCGA-AZ-4315-01 7 127637726 127637726 C A SND1 Intron 0.26 TCGA-AZ-4315-01 7 127668655 127668655 C A LRRC4 3'UTR 0.43 TCGA-AZ-4315-01 7 127892139 127892139 C T LEP Missense_Mutation p.P23L 0.33 deleterious(0) probably_damaging(0.978) TCGA-AZ-4315-01 7 127990958 127990958 G T PRRT4 Nonsense_Mutation p.C884* 0.28 TCGA-AZ-4315-01 7 128000003 128000003 C T PRRT4 Missense_Mutation p.V15I 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-AZ-4315-01 7 128037057 128037057 G T IMPDH1 Nonsense_Mutation p.S365* 0.33 TCGA-AZ-4315-01 7 128097618 128097618 G T HILPDA 3'UTR 0.24 TCGA-AZ-4315-01 7 128409183 128409183 G T CALU Missense_Mutation p.D312Y 0.41 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 7 128478481 128478481 C T FLNC Missense_Mutation p.A403V 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4315-01 7 128521715 128521715 T C KCP RNA 0.40 TCGA-AZ-4315-01 7 128588162 128588162 G A IRF5 Silent p.E389E 0.34 TCGA-AZ-4315-01 7 128610300 128610300 C T TNPO3 Missense_Mutation p.V834I 0.37 tolerated(0.22) benign(0.02) TCGA-AZ-4315-01 7 128637544 128637544 A C TNPO3 Missense_Mutation p.L353V 0.37 deleterious(0) possibly_damaging(0.893) TCGA-AZ-4315-01 7 128655116 128655116 G A TNPO3 Missense_Mutation p.R157C 0.32 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 7 129098078 129098078 G A STRIP2 Missense_Mutation p.S354N 0.30 tolerated(0.38) benign(0.06) TCGA-AZ-4315-01 7 129658430 129658430 G A ZC3HC1 3'UTR 0.36 TCGA-AZ-4315-01 7 129856431 129856431 A C SSMEM1 3'UTR 0.50 TCGA-AZ-4315-01 7 129912993 129912993 G T CPA2 Missense_Mutation p.E154D 0.35 deleterious(0) probably_damaging(0.929) TCGA-AZ-4315-01 7 129951888 129951888 C T CPA4 Missense_Mutation p.A335V 0.39 deleterious(0.04) benign(0.222) TCGA-AZ-4315-01 7 130418386 130418386 C T KLF14 Missense_Mutation p.A159T 0.50 tolerated(0.55) benign(0.043) TCGA-AZ-4315-01 7 131084165 131084165 G A MKLN1 Missense_Mutation p.E226K 0.31 deleterious(0) possibly_damaging(0.907) TCGA-AZ-4315-01 7 131194170 131194170 C T PODXL Missense_Mutation p.R326Q 0.35 tolerated(0.81) benign(0.005) TCGA-AZ-4315-01 7 131815196 131815196 C T PLXNA4 3'UTR 0.26 TCGA-AZ-4315-01 7 131866380 131866380 C A PLXNA4 Splice_Site p.X1085_splice 0.36 TCGA-AZ-4315-01 7 131866892 131866892 C T PLXNA4 Silent p.Q1072Q 0.28 TCGA-AZ-4315-01 7 131870100 131870100 T G PLXNA4 Missense_Mutation p.D1039A 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 7 132169604 132169604 A C PLXNA4 Intron 0.43 TCGA-AZ-4315-01 7 132959910 132959910 G A EXOC4 Missense_Mutation p.R87Q 0.24 tolerated(0.06) probably_damaging(0.997) TCGA-AZ-4315-01 7 133622823 133622823 G T EXOC4 Splice_Site p.X736_splice 0.27 TCGA-AZ-4315-01 7 133842860 133842860 A C LRGUK Missense_Mutation p.K248T 0.33 deleterious(0) possibly_damaging(0.629) TCGA-AZ-4315-01 7 133842867 133842867 G A LRGUK Silent p.T250T 0.65 TCGA-AZ-4315-01 7 134212570 134212570 C T AKR1B10 5'UTR 0.20 TCGA-AZ-4315-01 7 134225801 134225801 C T AKR1B10 Missense_Mutation p.S304F 0.30 tolerated(0.31) benign(0.013) TCGA-AZ-4315-01 7 134252931 134252931 G T AKR1B15 Nonsense_Mutation p.E58* 0.38 TCGA-AZ-4315-01 7 134613623 134613623 G A CALD1 Missense_Mutation p.D64N 0.24 deleterious(0.01) unknown(0) TCGA-AZ-4315-01 7 134625873 134625873 G T CALD1 Nonsense_Mutation p.E473* 0.26 TCGA-AZ-4315-01 7 134632503 134632503 C T CALD1 Nonsense_Mutation p.R593* 0.24 TCGA-AZ-4315-01 7 134730257 134730257 G T AGBL3 Missense_Mutation p.D554Y 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 134730583 134730583 G A AGBL3 Missense_Mutation p.E588K 0.37 tolerated(0.21) benign(0.117) TCGA-AZ-4315-01 7 134849673 134849673 A G TMEM140 Silent p.L160L 0.26 TCGA-AZ-4315-01 7 135106961 135106961 C T CNOT4 Missense_Mutation p.V106I 0.27 tolerated(0.16) possibly_damaging(0.509) TCGA-AZ-4315-01 7 135122949 135122949 C T CNOT4 Missense_Mutation p.R44Q 0.21 deleterious(0.02) probably_damaging(0.987) TCGA-AZ-4315-01 7 135287554 135287555 - A NUP205 Frame_Shift_Ins p.H841Tfs*47 0.24 TCGA-AZ-4315-01 7 135304357 135304357 C A NUP205 Missense_Mutation p.P1384T 0.27 tolerated(0.77) benign(0) TCGA-AZ-4315-01 7 135309937 135309937 G T NUP205 Missense_Mutation p.R1502I 0.28 tolerated(0.3) benign(0.102) TCGA-AZ-4315-01 7 135418799 135418799 G A FAM180A Missense_Mutation p.A149V 0.36 tolerated(0.07) benign(0.283) TCGA-AZ-4315-01 7 135613807 135613807 A G MTPN 3'UTR 0.37 TCGA-AZ-4315-01 7 135614713 135614713 T C MTPN Silent p.E106E 0.33 TCGA-AZ-4315-01 7 136700117 136700117 A C CHRM2 Silent p.R169R 0.33 TCGA-AZ-4315-01 7 137151664 137151664 C T DGKI Intron 0.26 TCGA-AZ-4315-01 7 137206683 137206683 A G DGKI Missense_Mutation p.I726T 0.29 deleterious(0.05) possibly_damaging(0.661) TCGA-AZ-4315-01 7 137262005 137262005 C A DGKI Missense_Mutation p.R575I 0.29 tolerated(0.05) benign(0.034) TCGA-AZ-4315-01 7 138262238 138262238 C T TRIM24 Nonsense_Mutation p.R721* 0.35 TCGA-AZ-4315-01 7 138279356 138279356 C T SVOPL Silent p.%3D 0.20 TCGA-AZ-4315-01 7 138281262 138281262 G A SVOPL Missense_Mutation p.A456V 0.24 tolerated(0.38) benign(0.05) TCGA-AZ-4315-01 7 138394473 138394473 G A ATP6V0A4 Silent p.I775I 0.31 TCGA-AZ-4315-01 7 138768751 138768751 G A ZC3HAV1 Missense_Mutation p.R158W 0.29 deleterious(0) probably_damaging(0.973) TCGA-AZ-4315-01 7 138944028 138944028 G T UBN2 Nonsense_Mutation p.E273* 0.37 TCGA-AZ-4315-01 7 139288862 139288862 C T HIPK2 Silent p.E740E 0.21 TCGA-AZ-4315-01 7 141292967 141292967 A G AGK Silent p.A41A 0.24 TCGA-AZ-4315-01 7 141408455 141408455 C T WEE2 5'UTR 0.44 TCGA-AZ-4315-01 7 141537835 141537835 G A PRSS37 Silent p.I85I 0.31 TCGA-AZ-4315-01 7 141645200 141645200 A G CLEC5A Missense_Mutation p.F27S 0.20 deleterious(0) possibly_damaging(0.901) TCGA-AZ-4315-01 7 141795367 141795367 A G MGAM Silent p.R1591R 0.30 TCGA-AZ-4315-01 7 142334653 142334653 T C TRBV20-1 Silent p.V25V 0.35 TCGA-AZ-4315-01 7 142459804 142459804 C A PRSS1 Missense_Mutation p.S127Y 0.25 deleterious(0.01) possibly_damaging(0.875) TCGA-AZ-4315-01 7 142563827 142563827 C T EPHB6 Silent p.V405V 0.13 TCGA-AZ-4315-01 7 142573410 142573410 C T TRPV6 Silent p.T311T 0.20 TCGA-AZ-4315-01 7 142609704 142609704 T C TRPV5 Missense_Mutation p.M578V 0.31 deleterious(0) probably_damaging(0.973) TCGA-AZ-4315-01 7 142612049 142612049 A C TRPV5 Splice_Site p.X484_splice 0.27 TCGA-AZ-4315-01 7 142637469 142637469 T G C7orf34 Missense_Mutation p.F80C 0.13 deleterious(0) probably_damaging(0.938) TCGA-AZ-4315-01 7 142641421 142641421 C A KEL Nonsense_Mutation p.E494* 0.33 TCGA-AZ-4315-01 7 142643301 142643301 C T KEL Missense_Mutation p.R436Q 0.30 tolerated(0.67) benign(0.017) TCGA-AZ-4315-01 7 142919745 142919745 G A TAS2R40 Missense_Mutation p.V192I 0.37 tolerated(0.26) benign(0.062) TCGA-AZ-4315-01 7 142984068 142984068 G A TMEM139 3'UTR 0.33 TCGA-AZ-4315-01 7 143017804 143017804 G T CLCN1 Missense_Mutation p.D117Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 7 143027960 143027960 C T CLCN1 Nonsense_Mutation p.R317* 0.37 TCGA-AZ-4315-01 7 143028358 143028358 G A CLCN1 Missense_Mutation p.R338Q 0.27 tolerated(0.07) probably_damaging(0.921) TCGA-AZ-4315-01 7 143270333 143270333 A C CTAGE15 Missense_Mutation p.N475H 0.13 tolerated(0.34) benign(0.011) TCGA-AZ-4315-01 7 143657156 143657156 C A OR2F1 Missense_Mutation p.F31L 0.29 tolerated(0.07) benign(0.03) TCGA-AZ-4315-01 7 143657706 143657706 C A OR2F1 Missense_Mutation p.L215I 0.34 deleterious(0.04) probably_damaging(0.909) TCGA-AZ-4315-01 7 143771330 143771334 TTCCA AATGG OR2A25 Missense_Mutation p.SI7MV 0.39 TCGA-AZ-4315-01 7 143826482 143826482 T G OR2A14 Missense_Mutation p.F93V 0.30 deleterious(0) possibly_damaging(0.514) TCGA-AZ-4315-01 7 143881358 143881358 C T CTAGE4 Silent p.H254H 0.34 TCGA-AZ-4315-01 7 143929762 143929762 A G OR2A42 Missense_Mutation p.Y59H 0.38 deleterious(0.01) possibly_damaging(0.623) TCGA-AZ-4315-01 7 144015427 144015427 C T OR2A1 Silent p.I70I 0.11 TCGA-AZ-4315-01 7 144060422 144060422 G A ARHGEF5 Silent p.G220G 0.29 TCGA-AZ-4315-01 7 144062225 144062225 G A ARHGEF5 Silent p.Q821Q 0.11 TCGA-AZ-4315-01 7 14661054 14661054 C A DGKB Missense_Mutation p.K412N 0.40 tolerated(0.57) benign(0.039) TCGA-AZ-4315-01 7 147092738 147092738 C T CNTNAP2 Silent p.V512V 0.32 TCGA-AZ-4315-01 7 147815297 147815297 C A CNTNAP2 Missense_Mutation p.S824Y 0.22 deleterious(0) possibly_damaging(0.892) TCGA-AZ-4315-01 7 148504761 148504761 C T EZH2 Missense_Mutation p.E745K 0.30 deleterious(0.02) benign(0.224) TCGA-AZ-4315-01 7 148815332 148815332 C T ZNF425 Missense_Mutation p.E43K 0.26 deleterious(0.02) possibly_damaging(0.765) TCGA-AZ-4315-01 7 149191507 149191507 G A ZNF746 Nonsense_Mutation p.R38* 0.29 TCGA-AZ-4315-01 7 149416658 149416658 T G KRBA1 5'UTR 0.18 TCGA-AZ-4315-01 7 149427317 149427317 G A KRBA1 Missense_Mutation p.A630T 0.19 tolerated(0.73) benign(0.002) TCGA-AZ-4315-01 7 149463109 149463109 C T ZNF467 Missense_Mutation p.G161D 0.28 tolerated(0.13) possibly_damaging(0.907) TCGA-AZ-4315-01 7 149476709 149476709 C T SSPO RNA 0.40 TCGA-AZ-4315-01 7 149477547 149477547 C T SSPO RNA 0.36 TCGA-AZ-4315-01 7 149492505 149492505 C T SSPO RNA 0.45 TCGA-AZ-4315-01 7 149503133 149503133 G A SSPO RNA 0.36 TCGA-AZ-4315-01 7 149544963 149544963 C T ZNF862 Silent p.A127A 0.29 TCGA-AZ-4315-01 7 149558177 149558177 A G ZNF862 Missense_Mutation p.Y643C 0.25 deleterious(0) possibly_damaging(0.497) TCGA-AZ-4315-01 7 150171214 150171214 G A GIMAP8 Missense_Mutation p.S266N 0.24 deleterious(0.01) probably_damaging(0.946) TCGA-AZ-4315-01 7 150171435 150171435 G A GIMAP8 Missense_Mutation p.D340N 0.30 tolerated(0.07) probably_damaging(0.997) TCGA-AZ-4315-01 7 150217838 150217838 A - GIMAP7 Frame_Shift_Del p.I261* 0.28 TCGA-AZ-4315-01 7 150440390 150440390 G T GIMAP5 3'UTR 0.43 TCGA-AZ-4315-01 7 150489175 150489175 C T TMEM176B Missense_Mutation p.R230Q 0.29 tolerated(0.17) benign(0.426) TCGA-AZ-4315-01 7 150720134 150720134 C A ATG9B Missense_Mutation p.E273D 0.40 tolerated(0.37) benign(0.108) TCGA-AZ-4315-01 7 150747851 150747851 T G ASIC3 Missense_Mutation p.F274V 0.45 deleterious(0.04) benign(0.407) TCGA-AZ-4315-01 7 150749657 150749657 G A ASIC3 Missense_Mutation p.E512K 0.21 tolerated_low_confidence(0.89) benign(0.005) TCGA-AZ-4315-01 7 150751029 150751029 T A CDK5 3'UTR 0.30 TCGA-AZ-4315-01 7 150753708 150753708 A C CDK5 Missense_Mutation p.F91V 0.26 deleterious(0) probably_damaging(0.978) TCGA-AZ-4315-01 7 150767555 150767555 G A SLC4A2 Silent p.P487P 0.42 TCGA-AZ-4315-01 7 150774459 150774459 C T FASTK Missense_Mutation p.R410H 0.44 tolerated(0.18) probably_damaging(0.953) TCGA-AZ-4315-01 7 150918665 150918665 G A ABCF2 Missense_Mutation p.T307M 0.34 deleterious(0.05) probably_damaging(0.953) TCGA-AZ-4315-01 7 151093119 151093119 C T WDR86 Missense_Mutation p.A157T 0.29 tolerated(0.54) benign(0.002) TCGA-AZ-4315-01 7 151181890 151181890 G A RHEB Missense_Mutation p.T42I 0.29 deleterious(0.03) probably_damaging(0.976) TCGA-AZ-4315-01 7 151716786 151716786 G A GALNTL5 Missense_Mutation p.R411H 0.36 deleterious(0.01) benign(0.001) TCGA-AZ-4315-01 7 151716792 151716792 G A GALNTL5 Missense_Mutation p.R413H 0.32 deleterious(0.02) benign(0.28) TCGA-AZ-4315-01 7 151849998 151849998 G A KMT2C Silent p.H4106H 0.33 TCGA-AZ-4315-01 7 151860278 151860278 A C KMT2C Missense_Mutation p.F3462V 0.33 probably_damaging(0.96) TCGA-AZ-4315-01 7 151874771 151874771 T C KMT2C Silent p.R2589R 0.38 TCGA-AZ-4315-01 7 151878105 151878105 T C KMT2C Silent p.G2280G 0.29 TCGA-AZ-4315-01 7 151945141 151945141 G A KMT2C Missense_Mutation p.S793L 0.11 benign(0.005) TCGA-AZ-4315-01 7 151970790 151970790 A C KMT2C Missense_Mutation p.S338A 0.06 probably_damaging(0.989) TCGA-AZ-4315-01 7 154519559 154519559 G A DPP6 Missense_Mutation p.G282D 0.33 deleterious(0.01) probably_damaging(0.947) TCGA-AZ-4315-01 7 154593174 154593174 T C DPP6 Splice_Site p.X469_splice 0.29 TCGA-AZ-4315-01 7 154681051 154681051 G A DPP6 Missense_Mutation p.D792N 0.31 deleterious(0.02) probably_damaging(0.977) TCGA-AZ-4315-01 7 155100265 155100265 G A INSIG1 3'UTR 0.33 TCGA-AZ-4315-01 7 156756622 156756622 C T NOM1 Silent p.L645L 0.29 TCGA-AZ-4315-01 7 156802380 156802380 A T MNX1 Missense_Mutation p.I222N 0.38 deleterious(0) possibly_damaging(0.837) TCGA-AZ-4315-01 7 157009613 157009613 T G UBE3C Missense_Mutation p.F621C 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 7 157341694 157341694 G A PTPRN2 Silent p.I974I 0.21 TCGA-AZ-4315-01 7 158719119 158719119 G A WDR60 Missense_Mutation p.A800T 0.29 deleterious(0) possibly_damaging(0.821) TCGA-AZ-4315-01 7 158826985 158826985 A G VIPR2 Missense_Mutation p.V297A 0.29 deleterious(0.01) benign(0.01) TCGA-AZ-4315-01 7 16298558 16298558 A C ISPD Missense_Mutation p.F338C 0.44 deleterious(0) probably_damaging(0.954) TCGA-AZ-4315-01 7 16685220 16685220 T G ANKMY2 5'UTR 0.40 TCGA-AZ-4315-01 7 1732812 1732812 G A AC074389.6 3'UTR 0.18 TCGA-AZ-4315-01 7 17370462 17370462 C T AHR Silent p.C219C 0.32 TCGA-AZ-4315-01 7 17378621 17378621 G T AHR Missense_Mutation p.G391V 0.29 deleterious(0) probably_damaging(0.925) TCGA-AZ-4315-01 7 17833887 17833887 T G SNX13 Missense_Mutation p.T886P 0.24 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 7 1787105 1787105 A C ELFN1 3'UTR 0.42 TCGA-AZ-4315-01 7 1787137 1787137 G A ELFN1 3'UTR 0.24 TCGA-AZ-4315-01 7 18535628 18535628 C A HDAC9 5'Flank 0.50 TCGA-AZ-4315-01 7 18631207 18631207 G A HDAC9 Missense_Mutation p.D162N 0.30 tolerated(0.28) possibly_damaging(0.705) TCGA-AZ-4315-01 7 18687597 18687597 C T HDAC9 Nonsense_Mutation p.R409* 0.22 TCGA-AZ-4315-01 7 18767262 18767262 G A HDAC9 Silent p.A597A 0.33 TCGA-AZ-4315-01 7 18868783 18868783 G T HDAC9 Splice_Site p.X775_splice 0.35 TCGA-AZ-4315-01 7 19015577 19015577 G A HDAC9 Splice_Site p.X1057_splice 0.34 TCGA-AZ-4315-01 7 20418838 20418838 C T ITGB8 Missense_Mutation p.R185C 0.35 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 7 20689690 20689690 G A ABCB5 Missense_Mutation p.A418T 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.19 tolerated(0.11) benign(0.16) TCGA-AZ-4315-01 7 20795329 20795329 C A ABCB5 3'UTR 0.37 TCGA-AZ-4315-01 7 20826455 20826455 T G SP8 5'UTR 0.43 TCGA-AZ-4315-01 7 21599390 21599390 C A DNAH11 Missense_Mutation p.L288M 0.34 possibly_damaging(0.843) TCGA-AZ-4315-01 7 21630815 21630815 C T DNAH11 Missense_Mutation p.L763F 0.09 probably_damaging(0.991) TCGA-AZ-4315-01 7 21640643 21640643 G A DNAH11 Missense_Mutation p.A1091T 0.32 benign(0.025) TCGA-AZ-4315-01 7 21654869 21654869 G A DNAH11 Nonsense_Mutation p.W1330* 0.22 TCGA-AZ-4315-01 7 21747336 21747336 G A DNAH11 Missense_Mutation p.R2196Q 0.28 benign(0.013) TCGA-AZ-4315-01 7 21840787 21840787 T G DNAH11 Silent p.A3360A 0.37 TCGA-AZ-4315-01 7 21847584 21847584 T G DNAH11 Missense_Mutation p.F3424V 0.19 possibly_damaging(0.783) TCGA-AZ-4315-01 7 21856095 21856095 C A DNAH11 Missense_Mutation p.P3455Q 0.29 probably_damaging(0.985) TCGA-AZ-4315-01 7 21908514 21908514 A C DNAH11 Missense_Mutation p.K3965Q 0.39 possibly_damaging(0.697) TCGA-AZ-4315-01 7 22176579 22176579 T G RAPGEF5 Missense_Mutation p.K614T 0.12 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 7 22355084 22355084 C A RAPGEF5 5'UTR 0.18 TCGA-AZ-4315-01 7 2314768 2314768 G T SNX8 Missense_Mutation p.P133T 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 23214118 23214118 G T KLHL7 3'UTR 0.39 TCGA-AZ-4315-01 7 23750139 23750139 G A STK31 Intron 0.39 TCGA-AZ-4315-01 7 23751756 23751756 A G STK31 Missense_Mutation p.Y30C 0.30 tolerated(0.18) benign(0.008) TCGA-AZ-4315-01 7 23766935 23766935 G A STK31 Splice_Site p.X108_splice 0.29 TCGA-AZ-4315-01 7 23802525 23802525 C T STK31 Missense_Mutation p.R467C 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 7 2418375 2418375 C T EIF3B Missense_Mutation p.R736C 0.40 deleterious(0) possibly_damaging(0.869) TCGA-AZ-4315-01 7 24720063 24720063 C T MPP6 Missense_Mutation p.A457V 0.40 deleterious(0.02) probably_damaging(0.951) TCGA-AZ-4315-01 7 25182279 25182279 G A C7orf31 Missense_Mutation p.S280L 0.24 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 7 2629670 2629670 C T IQCE Missense_Mutation p.R392C 0.28 deleterious(0.01) benign(0.046) TCGA-AZ-4315-01 7 26404207 26404207 G A SNX10 Missense_Mutation p.R55K 0.33 tolerated(0.14) benign(0.01) TCGA-AZ-4315-01 7 26894417 26894417 C A SKAP2 Missense_Mutation p.D54Y 0.38 deleterious(0.02) probably_damaging(0.95) TCGA-AZ-4315-01 7 2697975 2697975 G A TTYH3 Missense_Mutation p.D436N 0.30 tolerated(0.35) possibly_damaging(0.696) TCGA-AZ-4315-01 7 27135120 27135120 G A HOXA1 Missense_Mutation p.P138S 0.36 tolerated(1) benign(0.009) TCGA-AZ-4315-01 7 27140368 27140368 C T HOXA2 Missense_Mutation p.D370N 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 27150139 27150139 C T HOXA3 Missense_Mutation p.A41T 0.34 tolerated(0.19) benign(0.015) TCGA-AZ-4315-01 7 27186837 27186837 C A HOXA6 Intron 0.33 TCGA-AZ-4315-01 7 27669096 27669096 G A HIBADH Silent p.G126G 0.18 TCGA-AZ-4315-01 7 27832709 27832709 G A TAX1BP1 Missense_Mutation p.E430K 0.26 deleterious(0.02) possibly_damaging(0.904) TCGA-AZ-4315-01 7 2854590 2854590 G A GNA12 Intron 0.32 TCGA-AZ-4315-01 7 2951848 2951848 G A CARD11 Silent p.F1034F 0.22 TCGA-AZ-4315-01 7 2953023 2953023 G A CARD11 Missense_Mutation p.R973C 0.42 tolerated(0.05) benign(0.021) TCGA-AZ-4315-01 7 29980461 29980461 C T SCRN1 Silent p.S212S 0.35 TCGA-AZ-4315-01 7 30197258 30197258 G A MTURN 3'UTR 0.37 TCGA-AZ-4315-01 7 30673440 30673440 G T GARS Silent p.G728G 0.26 TCGA-AZ-4315-01 7 30951715 30951715 C T AQP1 Missense_Mutation p.A64V 0.37 tolerated(1) probably_damaging(0.999) TCGA-AZ-4315-01 7 31378054 31378054 C A NEUROD6 Nonsense_Mutation p.E277* 0.33 TCGA-AZ-4315-01 7 31378540 31378540 C T NEUROD6 Missense_Mutation p.D115N 0.30 deleterious(0) probably_damaging(0.945) TCGA-AZ-4315-01 7 31378584 31378584 T C NEUROD6 Missense_Mutation p.N100S 0.36 deleterious(0) possibly_damaging(0.874) TCGA-AZ-4315-01 7 31683273 31683273 G T CCDC129 Missense_Mutation p.Q789H 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 31692647 31692647 T C CCDC129 Intron 0.41 TCGA-AZ-4315-01 7 31876820 31876820 A G PDE1C Missense_Mutation p.S453P 0.39 tolerated(0.12) probably_damaging(0.932) TCGA-AZ-4315-01 7 31890335 31890335 C T PDE1C Silent p.E317E 0.42 TCGA-AZ-4315-01 7 32091172 32091172 G A PDE1C Intron 0.22 TCGA-AZ-4315-01 7 33044934 33044934 G T FKBP9 Missense_Mutation p.D562Y 0.26 deleterious(0) probably_damaging(0.937) TCGA-AZ-4315-01 7 33545252 33545252 G A BBS9 Missense_Mutation p.E765K 0.25 tolerated(0.08) benign(0.32) TCGA-AZ-4315-01 7 34125547 34125547 T C BMPER Missense_Mutation p.S530P 0.33 deleterious(0.03) possibly_damaging(0.854) TCGA-AZ-4315-01 7 34970829 34970829 A C DPY19L1 3'UTR 0.64 TCGA-AZ-4315-01 7 34994326 34994326 A C DPY19L1 Missense_Mutation p.F362C 0.30 deleterious(0.02) benign(0.049) TCGA-AZ-4315-01 7 35289809 35289809 A G TBX20 Missense_Mutation p.F45S 0.21 tolerated(0.32) possibly_damaging(0.614) TCGA-AZ-4315-01 7 36438785 36438785 G A ANLN Silent p.S90S 0.25 TCGA-AZ-4315-01 7 3678692 3678692 G A SDK1 Missense_Mutation p.R172Q 0.32 deleterious(0.01) probably_damaging(0.947) TCGA-AZ-4315-01 7 3681648 3681648 G A SDK1 Silent p.A208A 0.26 TCGA-AZ-4315-01 7 37253022 37253022 G A ELMO1 Missense_Mutation p.A291V 0.36 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 7 37253043 37253043 C T ELMO1 Missense_Mutation p.R284Q 0.30 tolerated(0.49) benign(0.012) TCGA-AZ-4315-01 7 37780100 37780100 C A GPR141 Silent p.V35V 0.37 TCGA-AZ-4315-01 7 38289063 38289063 A C TRGC2 Missense_Mutation p.F38V 0.13 deleterious(0.01) possibly_damaging(0.905) TCGA-AZ-4315-01 7 38433801 38433801 G A AMPH Missense_Mutation p.A471V 0.33 tolerated(0.25) benign(0.004) TCGA-AZ-4315-01 7 38471812 38471812 T C AMPH Missense_Mutation p.T379A 0.35 tolerated(0.12) possibly_damaging(0.529) TCGA-AZ-4315-01 7 38543283 38543283 G A AMPH Nonsense_Mutation p.R58* 0.30 TCGA-AZ-4315-01 7 38725209 38725209 G A FAM183B Missense_Mutation p.R133C 0.35 deleterious(0.03) benign(0.024) TCGA-AZ-4315-01 7 38783001 38783001 C T VPS41 Splice_Site p.X708_splice 0.42 TCGA-AZ-4315-01 7 38783010 38783010 T C VPS41 Missense_Mutation p.D705G 0.28 deleterious(0.01) possibly_damaging(0.609) TCGA-AZ-4315-01 7 38816307 38816307 G A VPS41 Missense_Mutation p.S285L 0.15 tolerated(0.44) benign(0.052) TCGA-AZ-4315-01 7 39606127 39606127 A G YAE1D1 Missense_Mutation p.N37S 0.50 tolerated(0.74) benign(0.009) TCGA-AZ-4315-01 7 39745749 39745749 C T RALA Nonsense_Mutation p.R176* 0.32 TCGA-AZ-4315-01 7 40085574 40085574 G T CDK13 Missense_Mutation p.K831N 0.45 tolerated(0.1) probably_damaging(0.998) TCGA-AZ-4315-01 7 41729612 41729612 C T INHBA Missense_Mutation p.R306H 0.42 deleterious(0.01) possibly_damaging(0.902) TCGA-AZ-4315-01 7 4198126 4198126 G A SDK1 Missense_Mutation p.D1558N 0.30 deleterious(0) probably_damaging(0.981) TCGA-AZ-4315-01 7 42003877 42003877 C A GLI3 3'UTR 0.28 TCGA-AZ-4315-01 7 42004463 42004463 G A GLI3 Missense_Mutation p.A1403V 0.37 tolerated_low_confidence(0.14) benign(0.066) TCGA-AZ-4315-01 7 4247761 4247761 G A SDK1 Missense_Mutation p.E1749K 0.61 tolerated(0.27) benign(0.082) TCGA-AZ-4315-01 7 4277373 4277373 C T SDK1 Silent p.L2029L 0.32 TCGA-AZ-4315-01 7 4281525 4281525 C T SDK1 Silent p.F2077F 0.32 TCGA-AZ-4315-01 7 43447193 43447193 T C HECW1 Missense_Mutation p.F222L 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 7 43483827 43483827 G A HECW1 Silent p.E352E 0.40 TCGA-AZ-4315-01 7 43548793 43548793 C A HECW1 Intron 0.47 TCGA-AZ-4315-01 7 43548881 43548881 C A HECW1 Intron 0.39 TCGA-AZ-4315-01 7 43664370 43664370 A C STK17A Missense_Mutation p.K392Q 0.29 deleterious(0.02) probably_damaging(0.944) TCGA-AZ-4315-01 7 43917881 43917881 C T URGCP Missense_Mutation p.R394H 0.34 tolerated(0.19) probably_damaging(0.999) TCGA-AZ-4315-01 7 43927646 43927646 T G URGCP Intron 0.38 TCGA-AZ-4315-01 7 44104881 44104881 C T PGAM2 Missense_Mutation p.R83H 0.36 tolerated(0.2) probably_damaging(0.982) TCGA-AZ-4315-01 7 44147419 44147419 C T AEBP1 Missense_Mutation p.R251W 0.33 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-AZ-4315-01 7 44556502 44556502 T C NPC1L1 Missense_Mutation p.T1134A 0.29 deleterious(0) possibly_damaging(0.895) TCGA-AZ-4315-01 7 44579684 44579684 C T NPC1L1 Silent p.S104S 0.39 TCGA-AZ-4315-01 7 44737086 44737086 C T OGDH Silent p.Y723Y 0.33 TCGA-AZ-4315-01 7 45018693 45018693 A G MYO1G 5'UTR 0.29 TCGA-AZ-4315-01 7 45662327 45662327 C T ADCY1 Silent p.F335F 0.31 TCGA-AZ-4315-01 7 45699746 45699746 C T ADCY1 Silent p.I471I 0.38 TCGA-AZ-4315-01 7 45750216 45750216 C T ADCY1 Missense_Mutation p.R1008W 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 45932684 45932684 A C IGFBP1 Missense_Mutation p.Q258H 0.29 tolerated(0.08) benign(0.022) TCGA-AZ-4315-01 7 45956842 45956842 G T IGFBP3 Missense_Mutation p.F206L 0.30 deleterious(0.03) benign(0.061) TCGA-AZ-4315-01 7 47341804 47341804 G A TNS3 Missense_Mutation p.A1175V 0.25 deleterious(0) benign(0.426) TCGA-AZ-4315-01 7 47474972 47474972 C T TNS3 Missense_Mutation p.A78T 0.26 tolerated(0.24) probably_damaging(0.929) TCGA-AZ-4315-01 7 47814575 47814575 T G PKD1L1 3'UTR 0.33 TCGA-AZ-4315-01 7 4796811 4796811 T C FOXK1 Missense_Mutation p.S413P 0.26 deleterious(0.03) possibly_damaging(0.686) TCGA-AZ-4315-01 7 48083113 48083113 G T C7orf57 Missense_Mutation p.G93C 0.32 deleterious(0.04) probably_damaging(0.982) TCGA-AZ-4315-01 7 48314105 48314105 T C ABCA13 Silent p.N1614N 0.32 TCGA-AZ-4315-01 7 48315739 48315739 C T ABCA13 Missense_Mutation p.A2159V 0.44 benign(0.01) TCGA-AZ-4315-01 7 48349565 48349565 G A ABCA13 Missense_Mutation p.V3115I 0.29 benign(0.024) TCGA-AZ-4315-01 7 48391804 48391804 G A ABCA13 Missense_Mutation p.D3470N 0.20 benign(0.001) TCGA-AZ-4315-01 7 48391953 48391953 A C ABCA13 Missense_Mutation p.K3519N 0.37 possibly_damaging(0.589) TCGA-AZ-4315-01 7 48556478 48556478 G A ABCA13 Splice_Site p.X4599_splice 0.26 TCGA-AZ-4315-01 7 4862121 4862121 G T RADIL Missense_Mutation p.L507I 0.37 tolerated(0.13) benign(0.222) TCGA-AZ-4315-01 7 4900989 4900989 C A PAPOLB Missense_Mutation p.E150D 0.32 deleterious(0) benign(0.37) TCGA-AZ-4315-01 7 4901207 4901207 C T PAPOLB Missense_Mutation p.E78K 0.31 tolerated(0.11) possibly_damaging(0.863) TCGA-AZ-4315-01 7 50514088 50514088 C T FIGNL1 Missense_Mutation p.E300K 0.29 deleterious(0.02) benign(0.387) TCGA-AZ-4315-01 7 5104358 5104358 C T RBAK Missense_Mutation p.T424M 0.39 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 7 5105318 5105318 C T RBAK 3'UTR 0.24 TCGA-AZ-4315-01 7 51095867 51095867 A C COBL Missense_Mutation p.F976V 0.36 tolerated(1) benign(0.002) TCGA-AZ-4315-01 7 53103908 53103908 C T POM121L12 Missense_Mutation p.L182F 0.29 deleterious(0.01) possibly_damaging(0.883) TCGA-AZ-4315-01 7 5396733 5396733 C T TNRC18 Missense_Mutation p.D1670N 0.38 possibly_damaging(0.844) TCGA-AZ-4315-01 7 54636768 54636768 C A VSTM2A Missense_Mutation p.A234D 0.30 deleterious_low_confidence(0) benign(0.133) TCGA-AZ-4315-01 7 56006766 56006766 C T ZNF713 Silent p.L120L 0.30 TCGA-AZ-4315-01 7 56007670 56007670 C T ZNF713 Missense_Mutation p.R422C 0.27 deleterious(0.02) benign(0.249) TCGA-AZ-4315-01 7 57187668 57187668 C A ZNF479 Missense_Mutation p.R485I 0.36 tolerated(0.36) benign(0.005) TCGA-AZ-4315-01 7 57509934 57509934 G A ZNF716 5'UTR 0.32 TCGA-AZ-4315-01 7 57509971 57509971 T C ZNF716 5'UTR 0.28 TCGA-AZ-4315-01 7 57528614 57528614 G A ZNF716 Silent p.L149L 0.27 TCGA-AZ-4315-01 7 57529842 57529842 C A ZNF716 3'UTR 0.25 TCGA-AZ-4315-01 7 5769212 5769212 A C RNF216 Missense_Mutation p.F414V 0.38 deleterious(0.03) benign(0.329) TCGA-AZ-4315-01 7 5940180 5940180 A C CCZ1 Missense_Mutation p.N99H 0.30 tolerated(0.1) benign(0.114) TCGA-AZ-4315-01 7 5949725 5949725 T C CCZ1 Missense_Mutation p.F253S 0.29 deleterious(0) probably_damaging(0.949) TCGA-AZ-4315-01 7 5967722 5967722 T G RSPH10B Intron 0.22 TCGA-AZ-4315-01 7 6038784 6038784 G A PMS2 Silent p.S220S 0.37 TCGA-AZ-4315-01 7 6230101 6230101 C A CYTH3 Missense_Mutation p.K32N 0.46 tolerated(0.32) unknown(0) TCGA-AZ-4315-01 7 63537716 63537716 A C ZNF727 Missense_Mutation p.K97Q 0.26 tolerated(0.07) probably_damaging(0.95) TCGA-AZ-4315-01 7 63981421 63981421 C A ZNF680 3'UTR 0.39 TCGA-AZ-4315-01 7 63981923 63981923 C A ZNF680 Missense_Mutation p.E403D 0.17 deleterious(0.02) benign(0.389) TCGA-AZ-4315-01 7 64167581 64167581 A G ZNF107 Missense_Mutation p.N300S 0.24 deleterious(0) benign(0.033) TCGA-AZ-4315-01 7 64167950 64167950 G A ZNF107 Missense_Mutation p.R423Q 0.27 tolerated(1) benign(0.02) TCGA-AZ-4315-01 7 64388635 64388635 T C ZNF273 Missense_Mutation p.I310T 0.44 tolerated(0.47) benign(0.301) TCGA-AZ-4315-01 7 64388852 64388852 T G ZNF273 Silent p.A382A 0.24 TCGA-AZ-4315-01 7 64388971 64388971 G T ZNF273 Missense_Mutation p.R422I 0.26 tolerated(0.41) benign(0.043) TCGA-AZ-4315-01 7 64389447 64389447 C T ZNF273 3'UTR 0.36 TCGA-AZ-4315-01 7 64438875 64438875 C A ZNF117 Missense_Mutation p.E358D 0.47 deleterious(0.02) benign(0.107) TCGA-AZ-4315-01 7 64863606 64863606 A C ZNF92 Missense_Mutation p.K193N 0.22 tolerated(0.08) possibly_damaging(0.744) TCGA-AZ-4315-01 7 64864086 64864086 C A ZNF92 Missense_Mutation p.F353L 0.29 tolerated(0.43) benign(0.002) TCGA-AZ-4315-01 7 65705361 65705361 G A TPST1 5'UTR 0.13 TCGA-AZ-4315-01 7 6621748 6621748 T C ZDHHC4 Missense_Mutation p.V79A 0.34 deleterious(0) possibly_damaging(0.773) TCGA-AZ-4315-01 7 66703601 66703601 G A TYW1 3'UTR 0.32 TCGA-AZ-4315-01 7 6731963 6731963 C A ZNF12 Nonsense_Mutation p.E204* 0.38 TCGA-AZ-4315-01 7 6744821 6744821 A G ZNF12 5'UTR 0.24 TCGA-AZ-4315-01 7 70886007 70886007 A G WBSCR17 Missense_Mutation p.H293R 0.25 deleterious(0.04) possibly_damaging(0.582) TCGA-AZ-4315-01 7 72209661 72209661 A G TYW1B Intron 0.27 TCGA-AZ-4315-01 7 72410460 72410460 C T POM121 Missense_Mutation p.R241W 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 72658508 72658508 G T GTF2IRD2P1 RNA 0.32 TCGA-AZ-4315-01 7 72743414 72743414 A G FKBP6 Missense_Mutation p.Y76C 0.28 tolerated(0.46) benign(0) TCGA-AZ-4315-01 7 72755320 72755320 C T FKBP6 Nonsense_Mutation p.R278* 0.71 TCGA-AZ-4315-01 7 73770773 73770773 C T CLIP2 Silent p.F279F 0.32 TCGA-AZ-4315-01 7 73795177 73795177 G A CLIP2 Silent p.T821T 0.30 TCGA-AZ-4315-01 7 73944103 73944103 A G GTF2IRD1 Missense_Mutation p.Y409C 0.38 deleterious(0) probably_damaging(0.962) TCGA-AZ-4315-01 7 74016832 74016832 C T GTF2IRD1 3'UTR 0.25 TCGA-AZ-4315-01 7 7477040 7477040 T C COL28A1 Silent p.G592G 0.31 TCGA-AZ-4315-01 7 75070903 75070903 G A POM121C 5'UTR 0.43 TCGA-AZ-4315-01 7 75104353 75104353 C A POM121C 5'UTR 0.27 TCGA-AZ-4315-01 7 7571062 7571062 G A COL28A1 Missense_Mutation p.R200C 0.43 deleterious(0) probably_damaging(0.93) TCGA-AZ-4315-01 7 75915247 75915247 C A SRRM3 3'UTR 0.27 TCGA-AZ-4315-01 7 7612410 7612410 G T MIOS Missense_Mutation p.D102Y 0.29 deleterious(0.04) possibly_damaging(0.667) TCGA-AZ-4315-01 7 7613140 7613140 G A MIOS Missense_Mutation p.R345Q 0.31 tolerated(0.48) possibly_damaging(0.77) TCGA-AZ-4315-01 7 76139843 76139843 T G UPK3B 5'UTR 0.36 TCGA-AZ-4315-01 7 7646669 7646669 T G MIOS Missense_Mutation p.C858W 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 7 76610443 76610443 G A UPK3B Intron 0.36 TCGA-AZ-4315-01 7 76866337 76866337 C T CCDC146 Missense_Mutation p.A77V 0.44 deleterious(0.01) benign(0.096) TCGA-AZ-4315-01 7 77379139 77379139 G A RSBN1L Missense_Mutation p.E368K 0.31 deleterious(0.01) probably_damaging(0.921) TCGA-AZ-4315-01 7 80103607 80103607 T G GNAT3 Missense_Mutation p.I184L 0.43 deleterious(0.01) possibly_damaging(0.547) TCGA-AZ-4315-01 7 80293793 80293793 C T CD36 Silent p.I227I 0.27 TCGA-AZ-4315-01 7 80433433 80433433 G A SEMA3C Nonsense_Mutation p.R264* 0.32 TCGA-AZ-4315-01 7 8126208 8126208 C T GLCCI1 3'UTR 0.44 TCGA-AZ-4315-01 7 81392099 81392099 T G HGF Missense_Mutation p.K60Q 0.32 tolerated(0.21) probably_damaging(0.989) TCGA-AZ-4315-01 7 81603842 81603842 G A CACNA2D1 Missense_Mutation p.S661L 0.31 deleterious(0.03) benign(0.324) TCGA-AZ-4315-01 7 82457201 82457201 A C PCLO Missense_Mutation p.I4777M 0.24 unknown(0) TCGA-AZ-4315-01 7 82579967 82579967 G A PCLO Missense_Mutation p.R3313W 0.27 unknown(0) TCGA-AZ-4315-01 7 82582041 82582041 T G PCLO Missense_Mutation p.K2743T 0.31 unknown(0) TCGA-AZ-4315-01 7 8260940 8260940 C T ICA1 Silent p.A115A 0.35 TCGA-AZ-4315-01 7 82763846 82763846 T G PCLO Missense_Mutation p.K1007T 0.33 unknown(0) TCGA-AZ-4315-01 7 82764220 82764220 T C PCLO Silent p.R882R 0.33 TCGA-AZ-4315-01 7 83014659 83014659 G A SEMA3E Missense_Mutation p.A609V 0.34 deleterious(0) probably_damaging(0.929) TCGA-AZ-4315-01 7 83119540 83119540 G T SEMA3E Missense_Mutation p.L56I 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 7 83606510 83606510 C T SEMA3A Missense_Mutation p.R552H 0.26 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 7 83689833 83689833 G T SEMA3A Silent p.G165G 0.30 TCGA-AZ-4315-01 7 84628610 84628610 C A SEMA3D 3'UTR 0.42 TCGA-AZ-4315-01 7 84671487 84671487 G A SEMA3D Nonsense_Mutation p.Q326* 0.33 TCGA-AZ-4315-01 7 84685173 84685173 C T SEMA3D Missense_Mutation p.A241T 0.20 deleterious(0) possibly_damaging(0.542) TCGA-AZ-4315-01 7 86416107 86416107 C T GRM3 Silent p.F333F 0.24 TCGA-AZ-4315-01 7 86539266 86539266 C A KIAA1324L Nonsense_Mutation p.E741* 0.32 TCGA-AZ-4315-01 7 86568189 86568189 C A KIAA1324L Missense_Mutation p.R312I 0.42 tolerated(0.17) benign(0.217) TCGA-AZ-4315-01 7 87011811 87011811 C T CROT Missense_Mutation p.T446M 0.42 deleterious(0.01) possibly_damaging(0.87) TCGA-AZ-4315-01 7 87082366 87082366 G A ABCB4 Nonsense_Mutation p.R144* 0.43 TCGA-AZ-4315-01 7 87160774 87160774 C T ABCB1 Missense_Mutation p.A841T 0.34 tolerated(0.79) benign(0.34) TCGA-AZ-4315-01 7 87173465 87173465 T G ABCB1 Missense_Mutation p.I731L 0.26 tolerated(0.77) benign(0.051) TCGA-AZ-4315-01 7 872172 872172 C A SUN1 Missense_Mutation p.S4Y 0.36 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 7 87229459 87229459 C A ABCB1 Missense_Mutation p.K14N 0.26 tolerated(0.45) benign(0.001) TCGA-AZ-4315-01 7 87280150 87280150 G A RUNDC3B Silent p.K45K 0.27 TCGA-AZ-4315-01 7 87537554 87537554 C A DBF4 3'UTR 0.22 TCGA-AZ-4315-01 7 87911999 87911999 C T STEAP4 Missense_Mutation p.R314Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 7 87912231 87912231 G A STEAP4 Missense_Mutation p.R237C 0.34 tolerated(0.07) benign(0.032) TCGA-AZ-4315-01 7 87913573 87913573 A C STEAP4 Silent p.T4T 0.22 TCGA-AZ-4315-01 7 893064 893064 C A SUN1 Missense_Mutation p.P358T 0.30 tolerated(0.26) benign(0.05) TCGA-AZ-4315-01 7 89854776 89854776 A G STEAP2 Missense_Mutation p.E127G 0.40 deleterious(0.01) benign(0.079) TCGA-AZ-4315-01 7 89936233 89936233 G T C7orf63 Nonsense_Mutation p.E762* 0.09 TCGA-AZ-4315-01 7 89984496 89984496 G A GTPBP10 Missense_Mutation p.R139Q 0.13 tolerated(0.16) benign(0.025) TCGA-AZ-4315-01 7 90043510 90043510 C A CLDN12 3'UTR 0.29 TCGA-AZ-4315-01 7 90896455 90896455 G A FZD1 3'UTR 0.26 TCGA-AZ-4315-01 7 91509414 91509414 G A MTERF 5'UTR 0.41 TCGA-AZ-4315-01 7 91632252 91632252 A C AKAP9 Missense_Mutation p.E1007D 0.28 probably_damaging(0.995) TCGA-AZ-4315-01 7 91672073 91672073 T C AKAP9 Missense_Mutation p.L1717S 0.33 probably_damaging(0.947) TCGA-AZ-4315-01 7 91793998 91793998 C A LRRD1 Missense_Mutation p.K173N 0.33 tolerated(0.75) benign(0.002) TCGA-AZ-4315-01 7 91867046 91867046 A C KRIT1 Missense_Mutation p.F97C 0.29 deleterious(0.04) probably_damaging(0.987) TCGA-AZ-4315-01 7 91870401 91870401 C T KRIT1 Silent p.T56T 0.24 TCGA-AZ-4315-01 7 91948655 91948655 A C ANKIB1 Missense_Mutation p.K166N 0.33 tolerated(0.3) benign(0.038) TCGA-AZ-4315-01 7 92130988 92130988 C A PEX1 Splice_Site p.X806_splice 0.21 TCGA-AZ-4315-01 7 92163885 92163885 C A RBM48 Missense_Mutation p.F206L 0.50 tolerated(0.28) benign(0.037) TCGA-AZ-4315-01 7 92731020 92731020 A G SAMD9 Missense_Mutation p.F1464S 0.28 deleterious(0.04) possibly_damaging(0.635) TCGA-AZ-4315-01 7 92731780 92731780 G T SAMD9 Missense_Mutation p.L1211I 0.34 tolerated(0.18) probably_damaging(0.968) TCGA-AZ-4315-01 7 92732765 92732765 A C SAMD9 Missense_Mutation p.F882L 0.38 deleterious(0) probably_damaging(0.949) TCGA-AZ-4315-01 7 92734891 92734891 G A SAMD9 Missense_Mutation p.R174C 0.37 deleterious(0.05) possibly_damaging(0.831) TCGA-AZ-4315-01 7 92760715 92760715 G A SAMD9L Missense_Mutation p.R1524C 0.36 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 7 92761024 92761024 G T SAMD9L Missense_Mutation p.H1421N 0.11 tolerated(0.13) benign(0.097) TCGA-AZ-4315-01 7 92763871 92763871 G T SAMD9L Missense_Mutation p.Q472K 0.33 tolerated(0.13) benign(0.287) TCGA-AZ-4315-01 7 92923938 92923938 G A CCDC132 Missense_Mutation p.R386Q 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-AZ-4315-01 7 93106978 93106978 G A CALCR Missense_Mutation p.P88S 0.50 tolerated(0.7) possibly_damaging(0.49) TCGA-AZ-4315-01 7 94049936 94049936 C T COL1A2 Silent p.G757G 0.46 TCGA-AZ-4315-01 7 94056983 94056983 C T COL1A2 Silent p.S1104S 0.40 TCGA-AZ-4315-01 7 94059717 94059717 C A COL1A2 3'UTR 0.33 TCGA-AZ-4315-01 7 94298053 94298053 T C PEG10 3'UTR 0.36 TCGA-AZ-4315-01 7 94931556 94931556 T G PON1 Missense_Mutation p.K290N 0.22 deleterious(0.01) possibly_damaging(0.511) TCGA-AZ-4315-01 7 94935653 94935653 C T PON1 Missense_Mutation p.A242T 0.35 tolerated(0.39) possibly_damaging(0.715) TCGA-AZ-4315-01 7 94953782 94953782 C T PON1 Silent p.A2A 0.27 TCGA-AZ-4315-01 7 95668610 95668610 C A DYNC1I1 Silent p.V479V 0.34 TCGA-AZ-4315-01 7 95761153 95761153 G A SLC25A13 Missense_Mutation p.A499V 0.34 deleterious(0) benign(0.408) TCGA-AZ-4315-01 7 96639541 96639541 C A DLX6 3'UTR 0.31 TCGA-AZ-4315-01 7 96649866 96649866 A C DLX5 3'UTR 0.33 TCGA-AZ-4315-01 7 97369318 97369318 T G TAC1 3'UTR 0.55 TCGA-AZ-4315-01 7 97842178 97842178 G A BHLHA15 Missense_Mutation p.R186Q 0.31 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-AZ-4315-01 7 97939767 97939767 A G BAIAP2L1 Silent p.N315N 0.31 TCGA-AZ-4315-01 7 97949431 97949431 A G BAIAP2L1 Missense_Mutation p.F96S 0.32 deleterious(0) probably_damaging(0.985) TCGA-AZ-4315-01 7 98257982 98257982 G T NPTX2 3'UTR 0.44 TCGA-AZ-4315-01 7 98498279 98498279 C T TRRAP Missense_Mutation p.A278V 0.32 possibly_damaging(0.483) TCGA-AZ-4315-01 7 98528268 98528268 C T TRRAP Missense_Mutation p.P1136S 0.46 possibly_damaging(0.878) TCGA-AZ-4315-01 7 98547864 98547864 C T TRRAP Silent p.F1764F 0.27 TCGA-AZ-4315-01 7 98582594 98582594 T G TRRAP Missense_Mutation p.L3110V 0.31 possibly_damaging(0.679) TCGA-AZ-4315-01 7 99016978 99016978 G A PTCD1 3'Flank 0.38 TCGA-AZ-4315-01 7 99054060 99054060 C T CPSF4 Silent p.G249G 0.42 TCGA-AZ-4315-01 7 99057720 99057720 G A PTCD1 Missense_Mutation p.A37V 0.44 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-AZ-4315-01 7 99084990 99084990 G A ZNF789 Missense_Mutation p.R386Q 0.28 tolerated(0.23) benign(0.389) TCGA-AZ-4315-01 7 99129261 99129261 G A ZKSCAN5 Missense_Mutation p.E637K 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-AZ-4315-01 7 99145403 99145403 A C FAM200A Missense_Mutation p.S210A 0.31 tolerated(0.06) benign(0.017) TCGA-AZ-4315-01 7 99161721 99161721 A G ZNF655 Intron 0.35 TCGA-AZ-4315-01 7 99169919 99169919 C T ZNF655 Missense_Mutation p.S98L 0.32 tolerated(0.42) possibly_damaging(0.519) TCGA-AZ-4315-01 7 99261659 99261659 C A CYP3A5 Missense_Mutation p.D244Y 0.26 deleterious(0.01) possibly_damaging(0.506) TCGA-AZ-4315-01 7 99262923 99262923 T C CYP3A5 Missense_Mutation p.Y179C 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4315-01 7 99704423 99704423 C T AP4M1 Missense_Mutation p.A427V 0.23 deleterious(0.01) benign(0.003) TCGA-AZ-4315-01 7 99752767 99752767 C T C7orf43 Missense_Mutation p.R537H 0.35 tolerated_low_confidence(0.07) benign(0.001) TCGA-AZ-4315-01 7 99768022 99768022 G T GPC2 Missense_Mutation p.P524H 0.23 tolerated(0.06) possibly_damaging(0.843) TCGA-AZ-4315-01 7 99773439 99773439 G A GPC2 Missense_Mutation p.A135V 0.36 tolerated(1) benign(0.065) TCGA-AZ-4315-01 7 99796991 99796991 G A STAG3 Splice_Site p.X525_splice 0.27 TCGA-AZ-4315-01 7 99799194 99799194 G A GATS 3'UTR 0.36 TCGA-AZ-4315-01 8 100123421 100123421 G A VPS13B Missense_Mutation p.D226N 0.30 deleterious(0) possibly_damaging(0.811) TCGA-AZ-4315-01 8 100830703 100830703 A G VPS13B Missense_Mutation p.I2821V 0.36 tolerated(0.15) benign(0.031) TCGA-AZ-4315-01 8 100990274 100990274 G T RGS22 Missense_Mutation p.F1130L 0.36 tolerated(0.24) possibly_damaging(0.582) TCGA-AZ-4315-01 8 101051197 101051197 C A RGS22 Nonsense_Mutation p.E710* 0.33 TCGA-AZ-4315-01 8 101083674 101083674 G T RGS22 Missense_Mutation p.P173T 0.32 tolerated(0.68) benign(0.005) TCGA-AZ-4315-01 8 101153112 101153112 C A FBXO43 Missense_Mutation p.R457I 0.38 deleterious(0) possibly_damaging(0.855) TCGA-AZ-4315-01 8 101157489 101157489 A G FBXO43 5'UTR 0.33 TCGA-AZ-4315-01 8 101206682 101206682 T G SPAG1 Intron 0.38 TCGA-AZ-4315-01 8 101724933 101724933 C T PABPC1 Missense_Mutation p.E275K 0.40 deleterious(0.01) possibly_damaging(0.858) TCGA-AZ-4315-01 8 103271264 103271264 C T UBR5 Missense_Mutation p.E2684K 0.31 deleterious(0.01) probably_damaging(0.949) TCGA-AZ-4315-01 8 103563928 103563928 A G ODF1 5'UTR 0.41 TCGA-AZ-4315-01 8 10388840 10388840 A G PRSS55 Missense_Mutation p.D128G 0.22 deleterious(0.01) possibly_damaging(0.744) TCGA-AZ-4315-01 8 104330966 104330966 T G FZD6 Nonsense_Mutation p.L109* 0.08 TCGA-AZ-4315-01 8 104340629 104340629 G A FZD6 Missense_Mutation p.R509Q 0.49 deleterious(0.04) probably_damaging(1) TCGA-AZ-4315-01 8 104413839 104413839 G A SLC25A32 Silent p.V239V 0.27 TCGA-AZ-4315-01 8 104455145 104455145 T G DCAF13 3'UTR 0.34 TCGA-AZ-4315-01 8 104513240 104513240 C T RIMS2 Silent p.A42A 0.41 TCGA-AZ-4315-01 8 104897620 104897620 G A RIMS2 Missense_Mutation p.A265T 0.31 tolerated_low_confidence(0.32) benign(0.005) TCGA-AZ-4315-01 8 104897850 104897850 T C RIMS2 Silent p.R341R 0.31 TCGA-AZ-4315-01 8 105263916 105263916 C T RIMS2 Silent p.S1306S 0.36 TCGA-AZ-4315-01 8 105367116 105367116 T C DCSTAMP Silent p.T347T 0.33 TCGA-AZ-4315-01 8 105393500 105393500 C T DPYS Missense_Mutation p.E496K 0.34 tolerated(0.1) benign(0.001) TCGA-AZ-4315-01 8 10557957 10557957 A G C8orf74 Silent p.G287G 0.36 TCGA-AZ-4315-01 8 10583691 10583691 A G SOX7 Missense_Mutation p.Y294H 0.33 tolerated(0.24) probably_damaging(0.996) TCGA-AZ-4315-01 8 106801140 106801140 G A ZFPM2 Missense_Mutation p.A243T 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-4315-01 8 106813420 106813420 C T ZFPM2 Silent p.F370F 0.35 TCGA-AZ-4315-01 8 106814291 106814291 G A ZFPM2 Missense_Mutation p.D661N 0.30 tolerated(0.15) benign(0.151) TCGA-AZ-4315-01 8 107718822 107718822 G A OXR1 Missense_Mutation p.R359Q 0.27 tolerated(0.2) benign(0.009) TCGA-AZ-4315-01 8 107718956 107718956 A C OXR1 Missense_Mutation p.N404H 0.34 tolerated(0.09) benign(0.003) TCGA-AZ-4315-01 8 107718976 107718976 T C OXR1 Silent p.C410C 0.31 TCGA-AZ-4315-01 8 10782233 10782233 C T XKR6 Missense_Mutation p.R291H 0.46 tolerated(0.28) probably_damaging(0.998) TCGA-AZ-4315-01 8 109229610 109229610 G A EIF3E Nonsense_Mutation p.R268* 0.28 TCGA-AZ-4315-01 8 110410717 110410717 G A PKHD1L1 Missense_Mutation p.E318K 0.34 tolerated(0.28) benign(0.01) TCGA-AZ-4315-01 8 110413811 110413812 - A PKHD1L1 Frame_Shift_Ins p.E458Rfs*5 0.23 TCGA-AZ-4315-01 8 110424504 110424504 A G PKHD1L1 Missense_Mutation p.N699S 0.44 tolerated(0.35) possibly_damaging(0.449) TCGA-AZ-4315-01 8 110476889 110476889 G A PKHD1L1 Missense_Mutation p.E2610K 0.35 deleterious(0.04) possibly_damaging(0.576) TCGA-AZ-4315-01 8 110503207 110503207 G T PKHD1L1 Nonsense_Mutation p.E3331* 0.38 TCGA-AZ-4315-01 8 110520468 110520468 C T PKHD1L1 Silent p.G3790G 0.17 TCGA-AZ-4315-01 8 110980330 110980330 T G KCNV1 Missense_Mutation p.D497A 0.36 deleterious(0.01) benign(0.115) TCGA-AZ-4315-01 8 113253956 113253956 C T CSMD3 Silent p.K3487K 0.31 TCGA-AZ-4315-01 8 113349813 113349813 C T CSMD3 Missense_Mutation p.G2267E 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 8 113353772 113353772 C A CSMD3 Nonsense_Mutation p.E2196* 0.27 TCGA-AZ-4315-01 8 113564866 113564866 G A CSMD3 Missense_Mutation p.R1440C 0.32 deleterious(0.01) benign(0.01) TCGA-AZ-4315-01 8 113657390 113657390 A C CSMD3 Missense_Mutation p.F1086L 0.28 tolerated(0.18) benign(0.001) TCGA-AZ-4315-01 8 113812481 113812481 C A CSMD3 Missense_Mutation p.D628Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 8 114111032 114111032 C A CSMD3 Missense_Mutation p.E290D 0.40 tolerated(0.8) possibly_damaging(0.644) TCGA-AZ-4315-01 8 11415493 11415493 G A BLK Silent p.K325K 0.36 TCGA-AZ-4315-01 8 114326972 114326972 C T CSMD3 Missense_Mutation p.E77K 0.34 tolerated(0.18) benign(0.369) TCGA-AZ-4315-01 8 114326990 114326990 C A CSMD3 Nonsense_Mutation p.G71* 0.26 TCGA-AZ-4315-01 8 114449090 114449090 C T CSMD3 5'UTR 0.31 TCGA-AZ-4315-01 8 116617075 116617075 T G TRPS1 Missense_Mutation p.K374T 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AZ-4315-01 8 116631906 116631906 G T TRPS1 Missense_Mutation p.S140Y 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AZ-4315-01 8 116631984 116631984 G A TRPS1 Missense_Mutation p.P114L 0.26 deleterious_low_confidence(0.03) benign(0.007) TCGA-AZ-4315-01 8 11696033 11696033 T C FDFT1 Missense_Mutation p.V390A 0.28 tolerated(0.61) benign(0.001) TCGA-AZ-4315-01 8 117784085 117784085 C A UTP23 3'UTR 0.32 TCGA-AZ-4315-01 8 117866665 117866665 T C RAD21 Missense_Mutation p.D327G 0.38 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 8 117954800 117954800 G A AARD Missense_Mutation p.E110K 0.29 deleterious(0.01) benign(0.01) TCGA-AZ-4315-01 8 119391835 119391835 G A SAMD12 Nonsense_Mutation p.R143* 0.16 TCGA-AZ-4315-01 8 119634120 119634120 T C SAMD12 5'UTR 0.34 TCGA-AZ-4315-01 8 120118082 120118082 C T COLEC10 Silent p.I162I 0.28 TCGA-AZ-4315-01 8 120608145 120608145 T C ENPP2 Missense_Mutation p.K357R 0.25 tolerated_low_confidence(0.29) benign(0.164) TCGA-AZ-4315-01 8 120797474 120797474 C T TAF2 Missense_Mutation p.G609E 0.41 deleterious(0) benign(0.327) TCGA-AZ-4315-01 8 120807870 120807870 A G TAF2 Missense_Mutation p.S365P 0.31 tolerated(0.15) benign(0.061) TCGA-AZ-4315-01 8 120854186 120854186 C T DSCC1 Missense_Mutation p.E258K 0.20 tolerated(0.08) benign(0.013) TCGA-AZ-4315-01 8 121211790 121211790 G T COL14A1 Nonsense_Mutation p.E288* 0.33 TCGA-AZ-4315-01 8 121237383 121237383 G T COL14A1 Missense_Mutation p.E598D 0.44 tolerated(0.3) benign(0.015) TCGA-AZ-4315-01 8 121444282 121444282 G A MRPL13 Missense_Mutation p.S78F 0.30 tolerated(1) benign(0.268) TCGA-AZ-4315-01 8 124042899 124042899 G T DERL1 Missense_Mutation p.L71I 0.30 tolerated(0.2) possibly_damaging(0.643) TCGA-AZ-4315-01 8 124146369 124146369 C T TBC1D31 Nonsense_Mutation p.R808* 0.30 TCGA-AZ-4315-01 8 124154517 124154517 T G TBC1D31 Missense_Mutation p.L886V 0.30 tolerated(0.12) benign(0.371) TCGA-AZ-4315-01 8 124195282 124195282 C A FAM83A Missense_Mutation p.F62L 0.37 deleterious(0.03) possibly_damaging(0.741) TCGA-AZ-4315-01 8 124219663 124219663 G A FAM83A Missense_Mutation p.R347Q 0.41 tolerated(0.99) benign(0.002) TCGA-AZ-4315-01 8 124361554 124361554 C A ATAD2 Nonsense_Mutation p.E593* 0.37 TCGA-AZ-4315-01 8 124796728 124796728 T G FAM91A1 Missense_Mutation p.F241C 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 124992893 124992893 G A FER1L6 Missense_Mutation p.A418T 0.28 tolerated(0.53) benign(0.045) TCGA-AZ-4315-01 8 125015499 125015499 G A FER1L6 Missense_Mutation p.E538K 0.34 tolerated(0.3) benign(0.004) TCGA-AZ-4315-01 8 125103704 125103704 G A FER1L6 Missense_Mutation p.E1478K 0.32 deleterious(0.01) possibly_damaging(0.797) TCGA-AZ-4315-01 8 125464692 125464692 G T TRMT12 3'UTR 0.31 TCGA-AZ-4315-01 8 125498953 125498953 A C RNF139 Missense_Mutation p.N355H 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 125499245 125499245 T C RNF139 Missense_Mutation p.V452A 0.11 tolerated(0.21) benign(0.374) TCGA-AZ-4315-01 8 12586832 12586832 C T LONRF1 Silent p.K566K 0.34 TCGA-AZ-4315-01 8 125989903 125989903 G T ZNF572 Nonsense_Mutation p.E465* 0.32 TCGA-AZ-4315-01 8 126114657 126114657 A C NSMCE2 Missense_Mutation p.N29H 0.29 deleterious(0.01) possibly_damaging(0.907) TCGA-AZ-4315-01 8 12880307 12880307 C T KIAA1456 3'UTR 0.45 TCGA-AZ-4315-01 8 12883190 12883190 C A KIAA1456 3'UTR 0.26 TCGA-AZ-4315-01 8 12883436 12883436 C A KIAA1456 3'UTR 0.29 TCGA-AZ-4315-01 8 12884147 12884147 T C KIAA1456 3'UTR 0.08 TCGA-AZ-4315-01 8 12946081 12946081 C T DLC1 Missense_Mutation p.E1403K 0.28 deleterious(0) probably_damaging(0.997) TCGA-AZ-4315-01 8 12957790 12957790 C A DLC1 Missense_Mutation p.A686S 0.26 tolerated(0.4) benign(0.008) TCGA-AZ-4315-01 8 13162735 13162735 T C DLC1 Intron 0.30 TCGA-AZ-4315-01 8 131792689 131792689 C T ADCY8 Missense_Mutation p.G1235S 0.31 tolerated_low_confidence(0.08) benign(0.001) TCGA-AZ-4315-01 8 131896910 131896910 C T ADCY8 Missense_Mutation p.R670K 0.48 tolerated(0.12) possibly_damaging(0.82) TCGA-AZ-4315-01 8 133036828 133036828 T C OC90 Missense_Mutation p.D445G 0.32 tolerated(0.07) benign(0.117) TCGA-AZ-4315-01 8 133142093 133142093 C T KCNQ3 Missense_Mutation p.D679N 0.38 tolerated(0.5) benign(0.157) TCGA-AZ-4315-01 8 133182625 133182625 C T KCNQ3 Silent p.A397A 0.58 TCGA-AZ-4315-01 8 13357488 13357488 A G DLC1 Silent p.C31C 0.33 TCGA-AZ-4315-01 8 133740047 133740047 A C TMEM71 Missense_Mutation p.S206A 0.31 tolerated(0.51) benign(0.05) TCGA-AZ-4315-01 8 133816882 133816882 A G PHF20L1 Silent p.P248P 0.35 TCGA-AZ-4315-01 8 133826884 133826884 G A PHF20L1 Silent p.A311A 0.36 TCGA-AZ-4315-01 8 133899227 133899227 C T TG Missense_Mutation p.A537V 0.38 tolerated(0.64) benign(0.003) TCGA-AZ-4315-01 8 133925333 133925333 G T TG Missense_Mutation p.D1401Y 0.43 deleterious(0) possibly_damaging(0.73) TCGA-AZ-4315-01 8 134050706 134050706 G T SLA 3'UTR 0.32 TCGA-AZ-4315-01 8 135533140 135533140 C A ZFAT Missense_Mutation p.D1074Y 0.46 deleterious(0.03) possibly_damaging(0.459) TCGA-AZ-4315-01 8 135669807 135669807 C A ZFAT Missense_Mutation p.D65Y 0.20 deleterious(0.01) possibly_damaging(0.817) TCGA-AZ-4315-01 8 139144875 139144875 C A FAM135B Missense_Mutation p.E1394D 0.34 deleterious(0) probably_damaging(0.949) TCGA-AZ-4315-01 8 139163664 139163664 C A FAM135B Missense_Mutation p.E1018D 0.33 tolerated(0.06) benign(0.049) TCGA-AZ-4315-01 8 139163790 139163790 C A FAM135B Silent p.P976P 0.38 TCGA-AZ-4315-01 8 139165343 139165343 C A FAM135B Missense_Mutation p.D459Y 0.36 deleterious(0) possibly_damaging(0.789) TCGA-AZ-4315-01 8 139263219 139263219 C T FAM135B Missense_Mutation p.R136Q 0.20 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 8 13947927 13947927 C A SGCZ 3'UTR 0.33 TCGA-AZ-4315-01 8 139825209 139825209 C T COL22A1 Silent p.E433E 0.30 TCGA-AZ-4315-01 8 140630517 140630517 C T KCNK9 Missense_Mutation p.R370H 0.41 deleterious(0) possibly_damaging(0.891) TCGA-AZ-4315-01 8 142151388 142151388 T G DENND3 Missense_Mutation p.F116L 0.38 tolerated(0.14) benign(0.02) TCGA-AZ-4315-01 8 142178575 142178575 C T DENND3 Silent p.I662I 0.29 TCGA-AZ-4315-01 8 143624767 143624767 C T BAI1 Missense_Mutation p.R1473W 0.42 deleterious(0) probably_damaging(0.986) TCGA-AZ-4315-01 8 143625720 143625720 C T BAI1 Missense_Mutation p.S1566L 0.43 deleterious(0.02) possibly_damaging(0.635) TCGA-AZ-4315-01 8 143746760 143746760 C T JRK RNA 0.26 TCGA-AZ-4315-01 8 143782022 143782022 G A LY6K Missense_Mutation p.R26Q 0.25 tolerated(0.49) benign(0.003) TCGA-AZ-4315-01 8 143784537 143784537 G A LY6K Silent p.A82A 0.31 TCGA-AZ-4315-01 8 143928059 143928059 C A GML Missense_Mutation p.L144M 0.32 tolerated(0.09) possibly_damaging(0.834) TCGA-AZ-4315-01 8 144391539 144391539 A C TOP1MT 3'UTR 0.44 TCGA-AZ-4315-01 8 144807952 144807952 G A FAM83H 3'UTR 0.33 TCGA-AZ-4315-01 8 144992562 144992562 G A PLEC Silent p.I3946I 0.44 TCGA-AZ-4315-01 8 145758566 145758566 T C ARHGAP39 Silent p.T944T 0.30 TCGA-AZ-4315-01 8 146067319 146067319 A C ZNF7 Missense_Mutation p.K276T 0.25 deleterious(0) probably_damaging(0.972) TCGA-AZ-4315-01 8 146067874 146067874 G T ZNF7 Missense_Mutation p.R461I 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 8 146107051 146107051 C T ZNF250 Missense_Mutation p.S511N 0.30 deleterious(0.02) benign(0.312) TCGA-AZ-4315-01 8 146278716 146278716 G A C8orf33 Missense_Mutation p.R146H 0.40 deleterious(0.03) probably_damaging(0.972) TCGA-AZ-4315-01 8 15480695 15480695 G A TUSC3 Missense_Mutation p.R82Q 0.34 deleterious(0) possibly_damaging(0.889) TCGA-AZ-4315-01 8 15601102 15601102 C T TUSC3 Silent p.G306G 0.28 TCGA-AZ-4315-01 8 1581033 1581033 G T DLGAP2 Missense_Mutation p.C464F 0.27 deleterious(0) possibly_damaging(0.904) TCGA-AZ-4315-01 8 16012624 16012624 C A MSR1 Missense_Mutation p.D283Y 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 16026284 16026284 C T MSR1 Missense_Mutation p.E105K 0.29 tolerated(0.28) benign(0.005) TCGA-AZ-4315-01 8 16035486 16035486 C A MSR1 Missense_Mutation p.W4C 0.21 deleterious(0.04) possibly_damaging(0.827) TCGA-AZ-4315-01 8 16859446 16859446 C T FGF20 Silent p.E32E 0.29 TCGA-AZ-4315-01 8 17088151 17088151 C T CNOT7 3'UTR 0.30 TCGA-AZ-4315-01 8 17406252 17406252 C A SLC7A2 Missense_Mutation p.L240I 0.30 deleterious(0.04) possibly_damaging(0.749) TCGA-AZ-4315-01 8 17409305 17409305 C A SLC7A2 Missense_Mutation p.P329T 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 8 17409324 17409324 C A SLC7A2 Missense_Mutation p.S335Y 0.35 deleterious(0) probably_damaging(0.96) TCGA-AZ-4315-01 8 17422550 17422550 C T SLC7A2 Silent p.N664N 0.30 TCGA-AZ-4315-01 8 17422779 17422779 T G SLC7A2 3'UTR 0.41 TCGA-AZ-4315-01 8 17486245 17486245 G A PDGFRL Missense_Mutation p.G252D 0.34 tolerated(0.09) benign(0.077) TCGA-AZ-4315-01 8 17611747 17611747 C A MTUS1 Missense_Mutation p.D524Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 8 17612484 17612484 C T MTUS1 Missense_Mutation p.G278E 0.29 deleterious(0.03) probably_damaging(0.971) TCGA-AZ-4315-01 8 17612659 17612659 C A MTUS1 Nonsense_Mutation p.E220* 0.29 TCGA-AZ-4315-01 8 17721927 17721927 A G FGL1 3'UTR 0.63 TCGA-AZ-4315-01 8 17813211 17813211 A C PCM1 Intron 0.33 TCGA-AZ-4315-01 8 17847382 17847382 G T PCM1 Missense_Mutation p.K1475N 0.34 tolerated(0.07) benign(0.263) TCGA-AZ-4315-01 8 18080059 18080059 A C NAT1 Missense_Mutation p.Q230P 0.39 tolerated(0.18) benign(0.037) TCGA-AZ-4315-01 8 1842737 1842737 C T ARHGEF10 Missense_Mutation p.S480L 0.38 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 8 192901 192901 C T ZNF596 Silent p.F9F 0.38 TCGA-AZ-4315-01 8 19363109 19363109 G A CSGALNACT1 Silent p.I79I 0.38 TCGA-AZ-4315-01 8 19694646 19694646 G A INTS10 Silent p.S538S 0.38 TCGA-AZ-4315-01 8 19796918 19796918 G A LPL 5'UTR 0.42 TCGA-AZ-4315-01 8 19805714 19805714 G A LPL Missense_Mutation p.E38K 0.31 tolerated(0.31) benign(0.274) TCGA-AZ-4315-01 8 20036834 20036834 C T SLC18A1 Missense_Mutation p.V96I 0.30 tolerated(0.42) benign(0.003) TCGA-AZ-4315-01 8 20110322 20110322 C T LZTS1 Missense_Mutation p.G374S 0.12 tolerated(0.11) benign(0.007) TCGA-AZ-4315-01 8 21837683 21837683 A G XPO7 Missense_Mutation p.D309G 0.32 tolerated(0.07) benign(0.017) TCGA-AZ-4315-01 8 22548617 22548617 G A EGR3 Missense_Mutation p.S178L 0.53 deleterious(0.01) benign(0.075) TCGA-AZ-4315-01 8 22886048 22886048 C A TNFRSF10B Nonsense_Mutation p.E182* 0.35 TCGA-AZ-4315-01 8 23198683 23198683 G A LOXL2 Nonsense_Mutation p.R189* 0.40 TCGA-AZ-4315-01 8 24193265 24193265 G A ADAM28 Intron 0.19 TCGA-AZ-4315-01 8 24242068 24242068 C T ADAMDEC1 Silent p.V17V 0.29 TCGA-AZ-4315-01 8 24257698 24257698 A G ADAMDEC1 Missense_Mutation p.N343D 0.20 tolerated(0.59) benign(0.038) TCGA-AZ-4315-01 8 24342871 24342871 T C ADAM7 Silent p.I319I 0.30 TCGA-AZ-4315-01 8 24349524 24349524 G T ADAM7 Nonsense_Mutation p.G489* 0.40 TCGA-AZ-4315-01 8 24358372 24358372 G A ADAM7 Missense_Mutation p.R691H 0.25 tolerated(0.1) benign(0.021) TCGA-AZ-4315-01 8 24359073 24359073 A C ADAM7 Missense_Mutation p.E731A 0.27 deleterious(0.01) benign(0.079) TCGA-AZ-4315-01 8 25154087 25154087 G A DOCK5 Missense_Mutation p.E177K 0.34 tolerated(0.94) benign(0.001) TCGA-AZ-4315-01 8 25279109 25279109 G A GNRH1 Nonsense_Mutation p.R73* 0.38 TCGA-AZ-4315-01 8 25716004 25716004 T C EBF2 Silent p.T453T 0.30 TCGA-AZ-4315-01 8 26365124 26365124 A C PNMA2 3'UTR 0.54 TCGA-AZ-4315-01 8 26365768 26365768 G T PNMA2 Missense_Mutation p.F168L 0.38 deleterious(0) probably_damaging(0.97) TCGA-AZ-4315-01 8 27287661 27287661 C T PTK2B Silent p.F201F 0.29 TCGA-AZ-4315-01 8 27315948 27315948 T G PTK2B Silent p.A984A 0.12 TCGA-AZ-4315-01 8 27402183 27402183 C A EPHX2 3'UTR 0.31 TCGA-AZ-4315-01 8 27455586 27455586 C T CLU 3'UTR 0.36 TCGA-AZ-4315-01 8 27466603 27466603 T C CLU Missense_Mutation p.E33G 0.32 deleterious(0) probably_damaging(0.912) TCGA-AZ-4315-01 8 27614247 27614247 G A CCDC25 Nonsense_Mutation p.R53* 0.31 TCGA-AZ-4315-01 8 27634081 27634081 T G ESCO2 Missense_Mutation p.F86V 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 27764677 27764677 G A SCARA5 Missense_Mutation p.R362C 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 2796226 2796226 C A CSMD1 Nonsense_Mutation p.E3526* 0.28 TCGA-AZ-4315-01 8 28360413 28360413 G T FZD3 5'UTR 0.71 TCGA-AZ-4315-01 8 28625583 28625583 T G INTS9 3'UTR 0.33 TCGA-AZ-4315-01 8 29005027 29005027 C T KIF13B Missense_Mutation p.E636K 0.33 tolerated(0.1) benign(0.038) TCGA-AZ-4315-01 8 29013318 29013318 C T KIF13B Missense_Mutation p.G487E 0.34 deleterious(0.02) benign(0.251) TCGA-AZ-4315-01 8 29989483 29989483 C T MBOAT4 Silent p.A428A 0.32 TCGA-AZ-4315-01 8 29989580 29989580 G A LEPROTL1 Intron 0.33 TCGA-AZ-4315-01 8 29995008 29995008 A G LEPROTL1 Missense_Mutation p.Q167R 0.33 deleterious_low_confidence(0) benign(0.069) TCGA-AZ-4315-01 8 30242676 30242676 T C RBPMS Splice_Site p.X22_splice 0.33 TCGA-AZ-4315-01 8 30541677 30541677 C T GSR Missense_Mutation p.E361K 0.30 tolerated(0.43) benign(0.09) TCGA-AZ-4315-01 8 3057246 3057246 G A CSMD1 Silent p.F1728F 0.48 TCGA-AZ-4315-01 8 3057259 3057259 C T CSMD1 Missense_Mutation p.R1724H 0.16 probably_damaging(0.979) TCGA-AZ-4315-01 8 30701108 30701108 G T TEX15 Missense_Mutation p.S1809Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 8 30702443 30702443 G T TEX15 Missense_Mutation p.S1364Y 0.25 tolerated(0.43) benign(0.016) TCGA-AZ-4315-01 8 30705605 30705605 G T TEX15 Missense_Mutation p.S310Y 0.30 tolerated(0.05) possibly_damaging(0.834) TCGA-AZ-4315-01 8 30706271 30706271 G T TEX15 Nonsense_Mutation p.S88* 0.27 TCGA-AZ-4315-01 8 3087730 3087730 C T CSMD1 Missense_Mutation p.D1393N 0.31 probably_damaging(0.964) TCGA-AZ-4315-01 8 32505799 32505799 C T NRG1 Intron 0.32 TCGA-AZ-4315-01 8 32616890 32616890 T C NRG1 Missense_Mutation p.S338P 0.23 tolerated(0.22) probably_damaging(0.999) TCGA-AZ-4315-01 8 33246973 33246973 G A FUT10 Silent p.V240V 0.25 TCGA-AZ-4315-01 8 33356077 33356077 G A MAK16 Missense_Mutation p.R278K 0.32 tolerated(0.52) benign(0.005) TCGA-AZ-4315-01 8 33356545 33356545 A G MAK16 3'UTR 0.33 TCGA-AZ-4315-01 8 3443739 3443739 G A CSMD1 Missense_Mutation p.L381F 0.37 possibly_damaging(0.783) TCGA-AZ-4315-01 8 35606170 35606170 G A UNC5D Nonsense_Mutation p.W631* 0.34 TCGA-AZ-4315-01 8 35608277 35608277 G A UNC5D Missense_Mutation p.D705N 0.32 tolerated(0.08) benign(0.006) TCGA-AZ-4315-01 8 35631986 35631986 G A UNC5D Missense_Mutation p.S883N 0.22 tolerated(1) benign(0.007) TCGA-AZ-4315-01 8 36722016 36722016 G A KCNU1 Silent p.S662S 0.42 TCGA-AZ-4315-01 8 36766859 36766859 C T KCNU1 Missense_Mutation p.R713W 0.13 deleterious(0) possibly_damaging(0.847) TCGA-AZ-4315-01 8 37687024 37687024 C A GPR124 Silent p.I167I 0.33 TCGA-AZ-4315-01 8 37730374 37730374 G A RAB11FIP1 Missense_Mutation p.S649F 0.32 deleterious(0.03) probably_damaging(0.948) TCGA-AZ-4315-01 8 38205575 38205575 C T WHSC1L1 Missense_Mutation p.D39N 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-AZ-4315-01 8 38283753 38283753 G A FGFR1 Missense_Mutation p.A242V 0.17 deleterious(0.03) benign(0.34) TCGA-AZ-4315-01 8 38369921 38369921 A G C8orf86 Missense_Mutation p.V219A 0.41 tolerated_low_confidence(0.1) benign(0) TCGA-AZ-4315-01 8 38803692 38803692 G T PLEKHA2 Missense_Mutation p.D100Y 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 38961210 38961210 C A ADAM9 Silent p.S817S 0.40 TCGA-AZ-4315-01 8 39022331 39022331 G A ADAM32 Missense_Mutation p.E215K 0.30 tolerated(0.06) possibly_damaging(0.69) TCGA-AZ-4315-01 8 39091459 39091459 G A ADAM32 Missense_Mutation p.R559Q 0.32 tolerated(0.3) benign(0.121) TCGA-AZ-4315-01 8 39468329 39468329 A C ADAM18 Intron 0.33 TCGA-AZ-4315-01 8 39468448 39468448 T G ADAM18 Intron 0.42 TCGA-AZ-4315-01 8 39587425 39587425 C T ADAM18 Missense_Mutation p.S729F 0.26 tolerated(0.23) benign(0.001) TCGA-AZ-4315-01 8 39634589 39634589 T G ADAM2 Missense_Mutation p.K328T 0.30 tolerated(0.06) benign(0.063) TCGA-AZ-4315-01 8 40011686 40011686 G A C8orf4 3'UTR 0.16 TCGA-AZ-4315-01 8 40011917 40011917 G T C8orf4 3'UTR 0.27 TCGA-AZ-4315-01 8 40012177 40012177 C T C8orf4 3'UTR 0.33 TCGA-AZ-4315-01 8 40532357 40532357 C T ZMAT4 Missense_Mutation p.G148E 0.35 tolerated(0.33) benign(0.307) TCGA-AZ-4315-01 8 41122949 41122949 T C SFRP1 Missense_Mutation p.K228E 0.27 tolerated(0.1) benign(0.253) TCGA-AZ-4315-01 8 41456583 41456583 C A AGPAT6 5'UTR 0.28 TCGA-AZ-4315-01 8 41512979 41512979 C T ANK1 3'UTR 0.36 TCGA-AZ-4315-01 8 41530367 41530367 G A ANK1 Missense_Mutation p.P1575L 0.53 deleterious(0.01) possibly_damaging(0.85) TCGA-AZ-4315-01 8 41551506 41551506 G A ANK1 Missense_Mutation p.R1189W 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-AZ-4315-01 8 41573337 41573337 G A ANK1 Missense_Mutation p.R512C 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 41804115 41804115 C T KAT6A Missense_Mutation p.D664N 0.30 possibly_damaging(0.619) TCGA-AZ-4315-01 8 42046542 42046542 A G PLAT Missense_Mutation p.S55P 0.33 deleterious(0) possibly_damaging(0.832) TCGA-AZ-4315-01 8 42565560 42565560 A G CHRNB3 Missense_Mutation p.N78D 0.26 deleterious(0) probably_damaging(0.938) TCGA-AZ-4315-01 8 42608235 42608235 G A CHRNA6 3'UTR 0.22 TCGA-AZ-4315-01 8 42611426 42611426 A G CHRNA6 Missense_Mutation p.Y306H 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 42798478 42798478 A G HOOK3 Missense_Mutation p.D97G 0.34 tolerated(0.22) possibly_damaging(0.589) TCGA-AZ-4315-01 8 42977604 42977604 T C POMK Missense_Mutation p.S213P 0.45 deleterious(0) probably_damaging(0.941) TCGA-AZ-4315-01 8 43013826 43013826 G A HGSNAT Missense_Mutation p.D115N 0.31 tolerated(0.48) benign(0.003) TCGA-AZ-4315-01 8 43155700 43155700 A C RNU6-104P 5'Flank 0.30 TCGA-AZ-4315-01 8 444528 444528 G T TDRP Missense_Mutation p.L60I 0.33 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 8 48626053 48626053 C T SPIDR Missense_Mutation p.R731W 0.40 deleterious(0.05) benign(0.157) TCGA-AZ-4315-01 8 48733389 48733389 G A PRKDC Missense_Mutation p.A3075V 0.23 benign(0.002) TCGA-AZ-4315-01 8 48749969 48749969 C T PRKDC Missense_Mutation p.R2521Q 0.29 benign(0.405) TCGA-AZ-4315-01 8 48775078 48775078 C A PRKDC Missense_Mutation p.E1924D 0.26 possibly_damaging(0.822) TCGA-AZ-4315-01 8 48824992 48824992 C T PRKDC Missense_Mutation p.R971Q 0.33 benign(0.044) TCGA-AZ-4315-01 8 48827950 48827950 C A PRKDC Missense_Mutation p.R852I 0.39 possibly_damaging(0.766) TCGA-AZ-4315-01 8 49647757 49647757 C T EFCAB1 5'UTR 0.30 TCGA-AZ-4315-01 8 51314772 51314772 A C SNTG1 Silent p.T10T 0.36 TCGA-AZ-4315-01 8 51705249 51705249 T G SNTG1 Missense_Mutation p.L472V 0.32 deleterious(0.02) probably_damaging(0.952) TCGA-AZ-4315-01 8 52567282 52567282 C T PXDNL Missense_Mutation p.S68N 0.33 tolerated(0.25) possibly_damaging(0.507) TCGA-AZ-4315-01 8 52746175 52746175 C T PCMTD1 Missense_Mutation p.R162Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 8 54791927 54791927 G A RGS20 Missense_Mutation p.R92Q 0.46 tolerated_low_confidence(0.08) possibly_damaging(0.616) TCGA-AZ-4315-01 8 55533636 55533636 G A RP1 Missense_Mutation p.R37Q 0.38 deleterious(0) possibly_damaging(0.893) TCGA-AZ-4315-01 8 55539715 55539715 G A RP1 Silent p.L1091L 0.35 TCGA-AZ-4315-01 8 55540739 55540739 G A RP1 Missense_Mutation p.A1433T 0.36 tolerated(1) benign(0.004) TCGA-AZ-4315-01 8 55542342 55542342 T C RP1 Missense_Mutation p.F1967S 0.32 tolerated(0.07) benign(0.114) TCGA-AZ-4315-01 8 56436132 56436132 C T XKR4 Silent p.F433F 0.27 TCGA-AZ-4315-01 8 57025548 57025548 G A MOS Missense_Mutation p.R332W 0.23 deleterious(0) possibly_damaging(0.75) TCGA-AZ-4315-01 8 57025882 57025882 G A MOS Silent p.F220F 0.22 TCGA-AZ-4315-01 8 57026330 57026330 A C MOS Missense_Mutation p.F71C 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 57079936 57079936 G A PLAG1 Silent p.C123C 0.39 TCGA-AZ-4315-01 8 57905869 57905869 C A IMPAD1 Missense_Mutation p.E92D 0.23 tolerated(0.08) possibly_damaging(0.839) TCGA-AZ-4315-01 8 59720288 59720288 G T TOX 3'UTR 0.18 TCGA-AZ-4315-01 8 59728256 59728256 T G TOX Missense_Mutation p.T345P 0.31 deleterious(0.03) benign(0) TCGA-AZ-4315-01 8 61178561 61178561 C T CA8 Missense_Mutation p.E114K 0.58 deleterious(0.02) possibly_damaging(0.896) TCGA-AZ-4315-01 8 61655001 61655001 A C CHD7 Missense_Mutation p.N337T 0.31 benign(0) TCGA-AZ-4315-01 8 61693701 61693701 A G CHD7 Missense_Mutation p.N603S 0.40 benign(0.292) TCGA-AZ-4315-01 8 61735063 61735063 C T CHD7 Nonsense_Mutation p.R987* 0.43 TCGA-AZ-4315-01 8 61749465 61749465 T G CHD7 Missense_Mutation p.F1360C 0.41 probably_damaging(0.999) TCGA-AZ-4315-01 8 61754209 61754209 T G CHD7 Missense_Mutation p.F1514V 0.34 probably_damaging(0.977) TCGA-AZ-4315-01 8 623838 623838 T C ERICH1 Missense_Mutation p.K172E 0.11 deleterious(0.04) benign(0.084) TCGA-AZ-4315-01 8 6289059 6289059 C T MCPH1 Silent p.F91F 0.21 TCGA-AZ-4315-01 8 63492222 63492222 G A NKAIN3 Missense_Mutation p.R60Q 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 8 64081338 64081338 G A YTHDF3 5'UTR 0.36 TCGA-AZ-4315-01 8 65496085 65496085 A C BHLHE22 3'UTR 0.12 TCGA-AZ-4315-01 8 65528385 65528385 A G CYP7B1 Missense_Mutation p.V238A 0.31 tolerated(0.52) benign(0.007) TCGA-AZ-4315-01 8 6612681 6612681 C T AGPAT5 Silent p.F285F 0.26 TCGA-AZ-4315-01 8 66525561 66525561 C T ARMC1 Missense_Mutation p.R128Q 0.23 tolerated(0.32) benign(0.005) TCGA-AZ-4315-01 8 66620172 66620172 C T MTFR1 Nonsense_Mutation p.R287* 0.47 TCGA-AZ-4315-01 8 66621548 66621548 A C MTFR1 3'UTR 0.50 TCGA-AZ-4315-01 8 67040594 67040594 G A TRIM55 Missense_Mutation p.R75Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 8 67040615 67040615 G T TRIM55 Missense_Mutation p.R82I 0.22 deleterious(0) possibly_damaging(0.491) TCGA-AZ-4315-01 8 67040677 67040677 A C TRIM55 Missense_Mutation p.N103H 0.24 deleterious(0) probably_damaging(0.954) TCGA-AZ-4315-01 8 67064760 67064760 G A TRIM55 Silent p.E378E 0.25 TCGA-AZ-4315-01 8 67478346 67478346 G A MYBL1 Missense_Mutation p.P695S 0.27 tolerated(0.31) benign(0.034) TCGA-AZ-4315-01 8 67488450 67488450 G T MYBL1 Missense_Mutation p.T421N 0.34 tolerated(0.65) benign(0) TCGA-AZ-4315-01 8 67546936 67546936 A C VCPIP1 Missense_Mutation p.L1157V 0.23 tolerated_low_confidence(0.81) benign(0) TCGA-AZ-4315-01 8 67547089 67547089 G A VCPIP1 Nonsense_Mutation p.R1106* 0.25 TCGA-AZ-4315-01 8 67577555 67577555 G A VCPIP1 Nonsense_Mutation p.R547* 0.33 TCGA-AZ-4315-01 8 67734687 67734687 C A SGK3 Missense_Mutation p.S137Y 0.37 tolerated(0.2) benign(0.113) TCGA-AZ-4315-01 8 67930039 67930039 A C PPP1R42 5'UTR 0.38 TCGA-AZ-4315-01 8 68007694 68007694 A G CSPP1 Missense_Mutation p.Y226C 0.35 deleterious(0.02) probably_damaging(0.978) TCGA-AZ-4315-01 8 68015339 68015339 A C CSPP1 Missense_Mutation p.N340H 0.38 tolerated(0.16) benign(0.029) TCGA-AZ-4315-01 8 68024221 68024221 G T CSPP1 Nonsense_Mutation p.E379* 0.24 TCGA-AZ-4315-01 8 68111115 68111115 C T ARFGEF1 3'UTR 0.38 TCGA-AZ-4315-01 8 68208798 68208798 C T ARFGEF1 Silent p.G169G 0.31 TCGA-AZ-4315-01 8 68421799 68421799 A G CPA6 Missense_Mutation p.F163L 0.31 tolerated(0.25) benign(0.246) TCGA-AZ-4315-01 8 68942835 68942835 G T PREX2 Missense_Mutation p.R216I 0.19 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 8 68950487 68950487 C A PREX2 Missense_Mutation p.L267I 0.36 deleterious(0.01) possibly_damaging(0.711) TCGA-AZ-4315-01 8 69434189 69434189 C T C8orf34 Silent p.G307G 0.33 TCGA-AZ-4315-01 8 69552612 69552612 G A C8orf34 Silent p.E369E 0.42 TCGA-AZ-4315-01 8 69730562 69730562 T G C8orf34 3'UTR 0.37 TCGA-AZ-4315-01 8 70536227 70536227 G A SULF1 Missense_Mutation p.E549K 0.38 tolerated(0.09) benign(0.036) TCGA-AZ-4315-01 8 70570832 70570832 G T SULF1 3'UTR 0.43 TCGA-AZ-4315-01 8 70964183 70964183 T G PRDM14 3'UTR 0.30 TCGA-AZ-4315-01 8 70964514 70964514 C T PRDM14 Missense_Mutation p.R505H 0.37 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 8 70981553 70981553 A G PRDM14 Silent p.G181G 0.31 TCGA-AZ-4315-01 8 70981793 70981793 C T PRDM14 Nonsense_Mutation p.W101* 0.45 TCGA-AZ-4315-01 8 71087023 71087023 C T NCOA2 Missense_Mutation p.D111N 0.18 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 8 72755668 72755668 G A RP11-383H13.1 Missense_Mutation p.R11Q 0.27 unknown(0) TCGA-AZ-4315-01 8 72755866 72755866 C T RP11-383H13.1 Missense_Mutation p.A77V 0.32 unknown(0) TCGA-AZ-4315-01 8 72951189 72951189 G A TRPA1 Missense_Mutation p.L736F 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-AZ-4315-01 8 73848482 73848482 C T KCNB2 Missense_Mutation p.R298C 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 73849115 73849115 G A KCNB2 Missense_Mutation p.E509K 0.32 tolerated(0.1) benign(0.065) TCGA-AZ-4315-01 8 73849724 73849724 T A KCNB2 Missense_Mutation p.S712T 0.30 tolerated_low_confidence(1) benign(0.026) TCGA-AZ-4315-01 8 73958553 73958553 C A TERF1 3'UTR 0.30 TCGA-AZ-4315-01 8 74204929 74204929 T G RPL7 Missense_Mutation p.K40Q 0.27 tolerated(0.06) benign(0.097) TCGA-AZ-4315-01 8 74464540 74464540 G T STAU2 Missense_Mutation p.L413I 0.27 deleterious(0.02) probably_damaging(0.979) TCGA-AZ-4315-01 8 74706199 74706199 A C UBE2W 3'UTR 0.36 TCGA-AZ-4315-01 8 75149232 75149232 G T JPH1 3'UTR 0.38 TCGA-AZ-4315-01 8 75276701 75276701 T C GDAP1 3'UTR 0.37 TCGA-AZ-4315-01 8 76476442 76476442 C T HNF4G 3'UTR 0.50 TCGA-AZ-4315-01 8 77766182 77766182 A G ZFHX4 Missense_Mutation p.D2342G 0.27 benign(0.12) TCGA-AZ-4315-01 8 77767750 77767750 C A ZFHX4 Missense_Mutation p.L2865I 0.38 benign(0.099) TCGA-AZ-4315-01 8 77896041 77896041 C T PEX2 Missense_Mutation p.R125Q 0.35 tolerated(0.52) benign(0.016) TCGA-AZ-4315-01 8 81577153 81577153 C T ZNF704 Missense_Mutation p.R275Q 0.37 tolerated(0.34) benign(0.01) TCGA-AZ-4315-01 8 82736039 82736039 T C SNX16 Missense_Mutation p.D200G 0.44 deleterious(0.01) possibly_damaging(0.896) TCGA-AZ-4315-01 8 85097244 85097244 G A RALYL Missense_Mutation p.R4Q 0.40 deleterious_low_confidence(0.05) benign(0.002) TCGA-AZ-4315-01 8 85441713 85441713 G A RALYL Missense_Mutation p.V66I 0.28 deleterious(0.03) possibly_damaging(0.795) TCGA-AZ-4315-01 8 85441753 85441753 G A RALYL Missense_Mutation p.R79Q 0.31 deleterious(0) possibly_damaging(0.776) TCGA-AZ-4315-01 8 8560091 8560091 C T CLDN23 Silent p.R61R 0.32 TCGA-AZ-4315-01 8 86193471 86193471 C T CA13 Missense_Mutation p.R228C 0.41 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 8 86360332 86360332 C T CA3 Nonsense_Mutation p.R245* 0.34 TCGA-AZ-4315-01 8 86386599 86386599 C T CA2 Missense_Mutation p.A133V 0.35 deleterious(0) probably_damaging(0.971) TCGA-AZ-4315-01 8 87060768 87060768 A G PSKH2 Missense_Mutation p.Y361H 0.30 tolerated(0.59) benign(0) TCGA-AZ-4315-01 8 87111213 87111213 C T ATP6V0D2 Silent p.L2L 0.25 TCGA-AZ-4315-01 8 87460618 87460618 G T WWP1 Nonsense_Mutation p.E717* 0.30 TCGA-AZ-4315-01 8 87541287 87541287 G A CPNE3 Missense_Mutation p.D83N 0.30 deleterious(0.04) probably_damaging(0.989) TCGA-AZ-4315-01 8 87591011 87591011 T C CNGB3 Missense_Mutation p.E670G 0.36 deleterious(0.03) benign(0.138) TCGA-AZ-4315-01 8 88883537 88883537 C A DCAF4L2 3'UTR 0.38 TCGA-AZ-4315-01 8 88886206 88886206 C T DCAF4L2 5'UTR 0.42 TCGA-AZ-4315-01 8 90782086 90782086 T G RIPK2 Missense_Mutation p.I190M 0.25 deleterious(0) probably_damaging(0.989) TCGA-AZ-4315-01 8 91893297 91893297 T C NECAB1 Missense_Mutation p.V99A 0.32 deleterious(0.01) benign(0.192) TCGA-AZ-4315-01 8 92139363 92139363 A G LRRC69 Missense_Mutation p.T120A 0.31 tolerated(0.26) benign(0.005) TCGA-AZ-4315-01 8 92350435 92350435 G T SLC26A7 Nonsense_Mutation p.E285* 0.20 TCGA-AZ-4315-01 8 92352753 92352753 T A SLC26A7 Missense_Mutation p.F334I 0.32 tolerated(0.09) possibly_damaging(0.732) TCGA-AZ-4315-01 8 92406210 92406210 G T SLC26A7 Missense_Mutation p.E626D 0.32 tolerated(0.5) benign(0.023) TCGA-AZ-4315-01 8 93017486 93017486 C T RUNX1T1 Missense_Mutation p.A211T 0.26 deleterious(0) probably_damaging(0.969) TCGA-AZ-4315-01 8 94937947 94937947 T C PDP1 3'UTR 0.29 TCGA-AZ-4315-01 8 9538306 9538306 G A TNKS Missense_Mutation p.R368Q 0.29 deleterious(0) benign(0.23) TCGA-AZ-4315-01 8 95404031 95404031 G T RAD54B Missense_Mutation p.L539I 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 8 95423507 95423507 T C RAD54B Missense_Mutation p.E114G 0.29 tolerated(0.71) benign(0) TCGA-AZ-4315-01 8 95508603 95508603 C A KIAA1429 Nonsense_Mutation p.E1446* 0.27 TCGA-AZ-4315-01 8 95523382 95523382 T G KIAA1429 Intron 0.22 TCGA-AZ-4315-01 8 95539371 95539371 C A KIAA1429 Missense_Mutation p.K367N 0.40 deleterious(0.03) benign(0.311) TCGA-AZ-4315-01 8 9562212 9562212 C T TNKS Nonsense_Mutation p.R383* 0.32 TCGA-AZ-4315-01 8 95709089 95709089 G A ESRP1 Missense_Mutation p.E661K 0.31 deleterious(0.04) possibly_damaging(0.453) TCGA-AZ-4315-01 8 95952422 95952422 C T TP53INP1 Missense_Mutation p.E47K 0.30 tolerated(0.09) benign(0.304) TCGA-AZ-4315-01 8 96264437 96264437 G A C8orf37 Missense_Mutation p.S150L 0.11 deleterious(0) possibly_damaging(0.748) TCGA-AZ-4315-01 8 96281426 96281426 G A C8orf37 5'UTR 0.22 TCGA-AZ-4315-01 8 97156709 97156709 C T GDF6 3'UTR 0.46 TCGA-AZ-4315-01 8 97620629 97620629 G A SDC2 Missense_Mutation p.E125K 0.29 tolerated(0.83) benign(0.419) TCGA-AZ-4315-01 8 97892088 97892088 C T CPQ Missense_Mutation p.T235M 0.33 deleterious(0) probably_damaging(0.987) TCGA-AZ-4315-01 8 98041711 98041711 C A CPQ Missense_Mutation p.Q348K 0.29 tolerated(0.8) benign(0.002) TCGA-AZ-4315-01 8 98155429 98155429 C T CPQ 3'UTR 0.41 TCGA-AZ-4315-01 8 98827575 98827575 G A LAPTM4B Silent p.A168A 0.40 TCGA-AZ-4315-01 8 99115125 99115125 C T HRSP12 Missense_Mutation p.R120Q 0.30 tolerated(0.23) benign(0.07) TCGA-AZ-4315-01 8 99140695 99140695 A G POP1 Missense_Mutation p.H138R 0.33 deleterious(0) probably_damaging(0.989) TCGA-AZ-4315-01 8 99152337 99152337 G A POP1 Missense_Mutation p.R465H 0.43 tolerated(0.58) benign(0.001) TCGA-AZ-4315-01 8 99440838 99440838 G A KCNS2 Missense_Mutation p.D211N 0.31 deleterious(0) benign(0.118) TCGA-AZ-4315-01 8 99441006 99441006 T A KCNS2 Missense_Mutation p.S267T 0.33 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 8 99441446 99441446 C A KCNS2 Missense_Mutation p.F413L 0.24 deleterious(0) probably_damaging(0.931) TCGA-AZ-4315-01 8 99442695 99442695 A C KCNS2 3'UTR 0.36 TCGA-AZ-4315-01 9 100090411 100090411 C T CCDC180 Missense_Mutation p.R635C 0.42 deleterious(0.03) benign(0.03) TCGA-AZ-4315-01 9 100132331 100132331 C T CCDC180 Silent p.F1483F 0.40 TCGA-AZ-4315-01 9 100132938 100132938 A C CCDC180 Missense_Mutation p.K1500Q 0.29 tolerated(0.12) possibly_damaging(0.607) TCGA-AZ-4315-01 9 100222631 100222631 G T TDRD7 Nonsense_Mutation p.E343* 0.26 TCGA-AZ-4315-01 9 100235814 100235814 G A TDRD7 Missense_Mutation p.C662Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 9 100617841 100617841 C A FOXE1 3'UTR 0.37 TCGA-AZ-4315-01 9 101258793 101258793 G A GABBR2 Missense_Mutation p.R212W 0.27 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 9 101494758 101494758 G A ANKS6 3'UTR 0.23 TCGA-AZ-4315-01 9 101900288 101900288 C T TGFBR1 Missense_Mutation p.S241L 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 9 101992659 101992659 G A SEC61B Missense_Mutation p.A82T 0.35 deleterious(0.05) benign(0.05) TCGA-AZ-4315-01 9 103310065 103310065 T G TMEFF1 Missense_Mutation p.N200K 0.29 deleterious(0.04) probably_damaging(0.945) TCGA-AZ-4315-01 9 103334852 103334852 C T TMEFF1 Missense_Mutation p.L318F 0.33 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 9 103338827 103338827 G A TMEFF1 Missense_Mutation p.R363Q 0.38 deleterious(0) probably_damaging(0.968) TCGA-AZ-4315-01 9 104152926 104152926 A C MRPL50 Missense_Mutation p.L100R 0.40 deleterious(0) probably_damaging(0.982) TCGA-AZ-4315-01 9 104170946 104170946 G A ZNF189 Missense_Mutation p.R299Q 0.25 tolerated(1) possibly_damaging(0.457) TCGA-AZ-4315-01 9 104171635 104171635 C T ZNF189 Nonsense_Mutation p.R529* 0.27 TCGA-AZ-4315-01 9 104238690 104238690 G A TMEM246 Missense_Mutation p.R229W 0.30 deleterious(0.02) benign(0.431) TCGA-AZ-4315-01 9 107266847 107266847 T C OR13F1 Missense_Mutation p.Y102H 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 9 107298489 107298489 A G OR13C3 Silent p.N202N 0.38 TCGA-AZ-4315-01 9 107298817 107298817 A C OR13C3 Missense_Mutation p.L93R 0.26 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 9 107298956 107298956 G T OR13C3 Missense_Mutation p.L47I 0.28 deleterious(0) benign(0.059) TCGA-AZ-4315-01 9 107380121 107380121 C T OR13C9 Missense_Mutation p.R122H 0.28 deleterious(0.04) benign(0.013) TCGA-AZ-4315-01 9 107456834 107456834 C A OR13D1 Missense_Mutation p.F44L 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 9 107571802 107571802 C T ABCA1 Missense_Mutation p.A1407T 0.37 tolerated(0.13) benign(0.004) TCGA-AZ-4315-01 9 107579645 107579645 C T ABCA1 Missense_Mutation p.G1168D 0.28 tolerated(0.15) benign(0.235) TCGA-AZ-4315-01 9 107599823 107599823 C A ABCA1 Missense_Mutation p.K360N 0.38 tolerated(0.25) benign(0.027) TCGA-AZ-4315-01 9 107645333 107645333 C A ABCA1 Missense_Mutation p.K136N 0.29 tolerated(0.39) benign(0.005) TCGA-AZ-4315-01 9 108234340 108234340 G A FSD1L Intron 0.32 TCGA-AZ-4315-01 9 108370218 108370218 C T FKTN Nonsense_Mutation p.R256* 0.32 TCGA-AZ-4315-01 9 108484837 108484837 G A TMEM38B Silent p.T159T 0.31 TCGA-AZ-4315-01 9 108536391 108536391 A C TMEM38B 3'UTR 0.27 TCGA-AZ-4315-01 9 109687249 109687249 C G ZNF462 Missense_Mutation p.H352Q 0.32 benign(0.227) TCGA-AZ-4315-01 9 109690454 109690454 G A ZNF462 Missense_Mutation p.E1421K 0.22 benign(0.147) TCGA-AZ-4315-01 9 111697926 111697926 G T FAM206A Nonsense_Mutation p.G30* 0.14 TCGA-AZ-4315-01 9 111970318 111970318 C A EPB41L4B Missense_Mutation p.K588N 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-AZ-4315-01 9 113166751 113166751 G T SVEP1 Silent p.I3174I 0.24 TCGA-AZ-4315-01 9 113189927 113189927 G T SVEP1 Silent p.V1973V 0.33 TCGA-AZ-4315-01 9 113563030 113563030 T C MUSK Missense_Mutation p.V791A 0.33 deleterious(0.01) benign(0.396) TCGA-AZ-4315-01 9 113637839 113637839 G A LPAR1 Silent p.S319S 0.24 TCGA-AZ-4315-01 9 114138760 114138760 T C KIAA0368 Missense_Mutation p.N1517S 0.32 tolerated(0.5) benign(0.122) TCGA-AZ-4315-01 9 114213722 114213722 C T KIAA0368 Missense_Mutation p.E224K 0.33 deleterious(0) probably_damaging(0.992) TCGA-AZ-4315-01 9 114305550 114305550 C T ZNF483 3'UTR 0.40 TCGA-AZ-4315-01 9 114411900 114411900 G A DNAJC25 Silent p.E219E 0.33 TCGA-AZ-4315-01 9 114521648 114521648 A C C9orf84 Intron 0.33 TCGA-AZ-4315-01 9 115337311 115337311 T C KIAA1958 Silent p.P317P 0.31 TCGA-AZ-4315-01 9 115456459 115456459 C A INIP Missense_Mutation p.R27I 0.26 deleterious(0) benign(0.196) TCGA-AZ-4315-01 9 115759714 115759714 G A ZNF883 RNA 0.33 TCGA-AZ-4315-01 9 115805251 115805251 T A ZFP37 Missense_Mutation p.E549D 0.37 tolerated(0.07) probably_damaging(0.919) TCGA-AZ-4315-01 9 115925154 115925154 C T SLC31A2 Missense_Mutation p.A130V 0.23 tolerated(0.22) probably_damaging(0.92) TCGA-AZ-4315-01 9 115925356 115925356 C T SLC31A2 3'UTR 0.30 TCGA-AZ-4315-01 9 115946040 115946040 C T FKBP15 Missense_Mutation p.R601Q 0.31 tolerated(0.31) probably_damaging(0.998) TCGA-AZ-4315-01 9 116190496 116190496 C T C9orf43 Missense_Mutation p.S367L 0.35 tolerated(0.6) benign(0) TCGA-AZ-4315-01 9 116269811 116269811 G A RGS3 Missense_Mutation p.E444K 0.28 deleterious(0.02) possibly_damaging(0.879) TCGA-AZ-4315-01 9 116930645 116930645 G T COL27A1 Missense_Mutation p.E270D 0.33 unknown(0) TCGA-AZ-4315-01 9 117093946 117093946 C A ORM2 Missense_Mutation p.S143Y 0.31 deleterious(0) possibly_damaging(0.642) TCGA-AZ-4315-01 9 117405463 117405463 T G C9orf91 Missense_Mutation p.L300R 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 9 117552717 117552717 A G TNFSF15 3'UTR 0.24 TCGA-AZ-4315-01 9 117803362 117803362 A G TNC Silent p.G1750G 0.31 TCGA-AZ-4315-01 9 117810776 117810776 C T TNC Missense_Mutation p.D1539N 0.40 tolerated(0.61) benign(0.05) TCGA-AZ-4315-01 9 117819640 117819640 G T TNC Silent p.S1457S 0.31 TCGA-AZ-4315-01 9 117826931 117826931 G A TNC Missense_Mutation p.S1161F 0.11 tolerated(0.17) benign(0.009) TCGA-AZ-4315-01 9 118138958 118138958 G A DEC1 5'UTR 0.30 TCGA-AZ-4315-01 9 118973928 118973928 C A PAPPA Silent p.V545V 0.27 TCGA-AZ-4315-01 9 119115098 119115098 G A PAPPA Missense_Mutation p.A1360T 0.39 tolerated(0.14) benign(0.026) TCGA-AZ-4315-01 9 119463007 119463007 A G TRIM32 3'UTR 0.29 TCGA-AZ-4315-01 9 120476418 120476418 A G TLR4 Missense_Mutation p.E671G 0.45 tolerated(0.34) benign(0.355) TCGA-AZ-4315-01 9 120476537 120476537 G A TLR4 Missense_Mutation p.D711N 0.32 deleterious(0.01) probably_damaging(1) TCGA-AZ-4315-01 9 121929543 121929543 C T BRINP1 Missense_Mutation p.R702Q 0.44 deleterious(0) possibly_damaging(0.885) TCGA-AZ-4315-01 9 121930174 121930174 G T BRINP1 Missense_Mutation p.L492M 0.45 deleterious(0.01) probably_damaging(0.969) TCGA-AZ-4315-01 9 121976434 121976434 C A BRINP1 Splice_Site p.X229_splice 0.36 TCGA-AZ-4315-01 9 123169425 123169425 C T CDK5RAP2 Missense_Mutation p.E1610K 0.36 tolerated(0.16) benign(0.011) TCGA-AZ-4315-01 9 123201866 123201866 C T CDK5RAP2 Missense_Mutation p.R1178Q 0.27 tolerated(0.14) probably_damaging(0.945) TCGA-AZ-4315-01 9 123234101 123234101 C T CDK5RAP2 Missense_Mutation p.E595K 0.37 deleterious(0) possibly_damaging(0.899) TCGA-AZ-4315-01 9 123301338 123301338 C A CDK5RAP2 Missense_Mutation p.R163I 0.19 deleterious(0) benign(0.308) TCGA-AZ-4315-01 9 123370071 123370071 C T MEGF9 Silent p.E435E 0.31 TCGA-AZ-4315-01 9 123620422 123620422 C T PHF19 Missense_Mutation p.E515K 0.31 tolerated(0.43) benign(0.018) TCGA-AZ-4315-01 9 123725007 123725007 G T C5 Silent p.L1482L 0.41 TCGA-AZ-4315-01 9 123742403 123742403 G A C5 Missense_Mutation p.R1206C 0.38 tolerated(0.12) benign(0.004) TCGA-AZ-4315-01 9 123800211 123800211 G A C5 Missense_Mutation p.S147L 0.26 deleterious(0) probably_damaging(0.969) TCGA-AZ-4315-01 9 123858790 123858790 G T CNTRL Missense_Mutation p.K190N 0.26 probably_damaging(0.969) TCGA-AZ-4315-01 9 123875841 123875841 G T CNTRL Missense_Mutation p.R395I 0.31 probably_damaging(0.999) TCGA-AZ-4315-01 9 123904396 123904396 G A CNTRL Missense_Mutation p.A907T 0.27 benign(0.023) TCGA-AZ-4315-01 9 123924435 123924435 G A CNTRL Missense_Mutation p.R1770Q 0.30 benign(0.004) TCGA-AZ-4315-01 9 123943470 123943470 T G RAB14 3'UTR 0.31 TCGA-AZ-4315-01 9 124088885 124088885 C T GSN Silent p.G555G 0.36 TCGA-AZ-4315-01 9 124461654 124461654 G A DAB2IP Silent p.Q65Q 0.38 TCGA-AZ-4315-01 9 124584903 124584903 G A TTLL11 Missense_Mutation p.A789V 0.21 deleterious_low_confidence(0) benign(0.275) TCGA-AZ-4315-01 9 124989232 124989232 C T LHX6 Silent p.T78T 0.29 TCGA-AZ-4315-01 9 125014161 125014161 G A RBM18 Nonsense_Mutation p.R69* 0.32 TCGA-AZ-4315-01 9 125239676 125239676 T C OR1J1 Missense_Mutation p.Y177C 0.29 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-AZ-4315-01 9 125289393 125289393 G T OR1N1 Missense_Mutation p.F60L 0.38 deleterious(0.01) benign(0.006) TCGA-AZ-4315-01 9 125330538 125330538 G A OR1L8 Silent p.C73C 0.35 TCGA-AZ-4315-01 9 125330571 125330571 G T OR1L8 Missense_Mutation p.F62L 0.28 deleterious(0.01) possibly_damaging(0.476) TCGA-AZ-4315-01 9 125424850 125424850 C T OR1L1 Missense_Mutation p.P286S 0.38 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 9 125437715 125437715 T G OR1L3 Missense_Mutation p.F103V 0.34 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 9 125551633 125551633 C T OR5C1 Missense_Mutation p.S141L 0.31 deleterious(0) probably_damaging(0.922) TCGA-AZ-4315-01 9 125772653 125772653 G A RABGAP1 Silent p.K465K 0.35 TCGA-AZ-4315-01 9 125797611 125797611 C T GPR21 Nonsense_Mutation p.R256* 0.40 TCGA-AZ-4315-01 9 126132882 126132882 G A CRB2 Missense_Mutation p.G517D 0.29 deleterious(0.03) probably_damaging(0.982) TCGA-AZ-4315-01 9 127220961 127220961 C T GPR144 Silent p.V584V 0.22 TCGA-AZ-4315-01 9 127619800 127619800 A C WDR38 Missense_Mutation p.H279P 0.32 deleterious(0.01) probably_damaging(0.958) TCGA-AZ-4315-01 9 128070185 128070186 - T GAPVD1 Intron 0.22 TCGA-AZ-4315-01 9 128347973 128347973 C T MAPKAP1 Missense_Mutation p.D178N 0.36 tolerated(0.33) benign(0.02) TCGA-AZ-4315-01 9 129453251 129453251 G A LMX1B Missense_Mutation p.E155K 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 9 129596960 129596960 A G ZBTB43 3'UTR 0.35 TCGA-AZ-4315-01 9 129644017 129644017 T A ZBTB34 3'UTR 0.26 TCGA-AZ-4315-01 9 129644258 129644258 C T ZBTB34 3'UTR 0.31 TCGA-AZ-4315-01 9 129646207 129646207 G A ZBTB34 3'UTR 0.26 TCGA-AZ-4315-01 9 129646537 129646537 A T ZBTB34 3'UTR 0.30 TCGA-AZ-4315-01 9 129870418 129870418 G A ANGPTL2 Missense_Mutation p.A198V 0.35 tolerated(0.1) benign(0.003) TCGA-AZ-4315-01 9 130430377 130430377 C T STXBP1 Silent p.I271I 0.33 TCGA-AZ-4315-01 9 130471896 130471896 C T C9orf117 Silent p.F119F 0.30 TCGA-AZ-4315-01 9 130513577 130513577 G T SH2D3C Missense_Mutation p.F186L 0.38 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 9 131023790 131023790 C T GOLGA2 Silent p.E398E 0.38 TCGA-AZ-4315-01 9 131262349 131262349 G A ODF2 Missense_Mutation p.D769N 0.29 deleterious(0) benign(0.085) TCGA-AZ-4315-01 9 131346136 131346136 T C SPTAN1 Missense_Mutation p.L694P 0.44 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 9 131361338 131361338 G T SPTAN1 Intron 0.17 TCGA-AZ-4315-01 9 131591080 131591080 G A C9orf114 Missense_Mutation p.R48W 0.24 deleterious(0.01) benign(0.386) TCGA-AZ-4315-01 9 131598370 131598370 G A CCBL1 Intron 0.39 TCGA-AZ-4315-01 9 131669842 131669842 G A LRRC8A Silent p.T133T 0.29 TCGA-AZ-4315-01 9 131709088 131709088 G A DOLK Silent p.I165I 0.20 TCGA-AZ-4315-01 9 131749102 131749102 G A NUP188 Missense_Mutation p.E738K 0.38 deleterious(0.01) benign(0.403) TCGA-AZ-4315-01 9 131763975 131763975 G A NUP188 Silent p.L1337L 0.26 TCGA-AZ-4315-01 9 132394935 132394935 C T NTMT1 5'UTR 0.42 TCGA-AZ-4315-01 9 132593277 132593277 G T C9orf78 Missense_Mutation p.P139T 0.21 tolerated(0.52) benign(0.012) TCGA-AZ-4315-01 9 132642413 132642413 C T USP20 Missense_Mutation p.S869L 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 9 132687264 132687264 A C FNBP1 Nonsense_Mutation p.L321* 0.34 TCGA-AZ-4315-01 9 132982011 132982011 G A NCS1 Missense_Mutation p.R79Q 0.20 tolerated(0.26) benign(0.108) TCGA-AZ-4315-01 9 132988693 132988693 A G NCS1 Missense_Mutation p.Q167R 0.38 deleterious(0.04) benign(0.053) TCGA-AZ-4315-01 9 133491782 133491782 C T FUBP3 Nonsense_Mutation p.R149* 0.25 TCGA-AZ-4315-01 9 133755915 133755915 C T ABL1 Silent p.G533G 0.37 TCGA-AZ-4315-01 9 133805191 133805191 G A FIBCD1 Silent p.F105F 0.34 TCGA-AZ-4315-01 9 134308065 134308065 G A PRRC2B Silent p.P59P 0.27 TCGA-AZ-4315-01 9 134404349 134404349 G A UCK1 Silent p.F200F 0.32 TCGA-AZ-4315-01 9 135203672 135203672 C T SETX Missense_Mutation p.D1105N 0.38 tolerated(0.08) benign(0.035) TCGA-AZ-4315-01 9 135204074 135204074 C T SETX Missense_Mutation p.A971T 0.27 tolerated(0.06) benign(0.139) TCGA-AZ-4315-01 9 135204632 135204632 C A SETX Missense_Mutation p.D785Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-AZ-4315-01 9 135205100 135205100 T C SETX Missense_Mutation p.K629E 0.38 tolerated(0.43) benign(0.003) TCGA-AZ-4315-01 9 135266065 135266065 T C TTF1 Missense_Mutation p.E714G 0.37 deleterious(0) possibly_damaging(0.908) TCGA-AZ-4315-01 9 135277051 135277051 C A TTF1 Missense_Mutation p.K386N 0.28 deleterious(0) benign(0.265) TCGA-AZ-4315-01 9 135357744 135357744 C A C9orf171 Silent p.S81S 0.26 TCGA-AZ-4315-01 9 135413046 135413046 G A C9orf171 Missense_Mutation p.E231K 0.44 tolerated(0.06) possibly_damaging(0.63) TCGA-AZ-4315-01 9 135447800 135447800 C A C9orf171 Missense_Mutation p.P289H 0.50 deleterious(0.05) probably_damaging(0.974) TCGA-AZ-4315-01 9 135759359 135759359 C T C9orf9 Missense_Mutation p.R9C 0.31 deleterious(0.04) benign(0.06) TCGA-AZ-4315-01 9 135927476 135927476 A G GTF3C5 Silent p.R266R 0.34 TCGA-AZ-4315-01 9 135945950 135945950 C T CEL Silent p.F466F 0.39 TCGA-AZ-4315-01 9 136031482 136031482 T C GBGT1 Intron 0.42 TCGA-AZ-4315-01 9 136230467 136230467 C T SURF4 Missense_Mutation p.D238N 0.45 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 9 136320407 136320407 T C ADAMTS13 Missense_Mutation p.C1084R 0.24 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 9 136324252 136324252 G A ADAMTS13 Missense_Mutation p.V1412I 0.24 tolerated_low_confidence(0.15) benign(0.008) TCGA-AZ-4315-01 9 136324376 136324376 G A ADAMTS13 3'UTR 0.43 TCGA-AZ-4315-01 9 136339174 136339174 G A SLC2A6 Missense_Mutation p.R322W 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 9 136402566 136402566 G A ADAMTSL2 Missense_Mutation p.D44N 0.42 deleterious(0) benign(0.013) TCGA-AZ-4315-01 9 136532044 136532044 C T SARDH Intron 0.39 TCGA-AZ-4315-01 9 136913345 136913345 C T BRD3 Missense_Mutation p.D316N 0.23 tolerated(1) probably_damaging(0.981) TCGA-AZ-4315-01 9 137328414 137328414 A G RXRA Missense_Mutation p.D448G 0.26 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 9 137620573 137620573 G T COL5A1 Missense_Mutation p.D282Y 0.12 probably_damaging(0.988) TCGA-AZ-4315-01 9 137623485 137623485 G A COL5A1 Silent p.A436A 0.29 TCGA-AZ-4315-01 9 137674550 137674550 G A COL5A1 Missense_Mutation p.G823D 0.29 unknown(0) TCGA-AZ-4315-01 9 137709648 137709648 G A COL5A1 Missense_Mutation p.E1401K 0.42 unknown(0) TCGA-AZ-4315-01 9 137808209 137808209 C T FCN1 Missense_Mutation p.V68I 0.27 tolerated(0.37) benign(0.003) TCGA-AZ-4315-01 9 137968702 137968702 C T OLFM1 Intron 0.34 TCGA-AZ-4315-01 9 138236214 138236214 G A C9orf62 Nonsense_Mutation p.W140* 0.27 TCGA-AZ-4315-01 9 138454172 138454172 G A PAEP Silent p.A43A 0.26 TCGA-AZ-4315-01 9 138456100 138456100 G A PAEP Silent p.A107A 0.25 TCGA-AZ-4315-01 9 138531020 138531020 C A GLT6D1 Missense_Mutation p.R5I 0.36 deleterious(0) probably_damaging(0.937) TCGA-AZ-4315-01 9 138714262 138714262 C T CAMSAP1 Missense_Mutation p.E749K 0.31 tolerated(0.1) benign(0.067) TCGA-AZ-4315-01 9 138742245 138742245 C A CAMSAP1 Nonsense_Mutation p.E291* 0.20 TCGA-AZ-4315-01 9 139250834 139250834 C A GPSM1 Missense_Mutation p.F551L 0.37 tolerated(0.39) benign(0.047) TCGA-AZ-4315-01 9 139571892 139571892 C T AGPAT2 Missense_Mutation p.S100N 0.36 deleterious(0.03) probably_damaging(0.921) TCGA-AZ-4315-01 9 139746846 139746846 G A MAMDC4 5'UTR 0.31 TCGA-AZ-4315-01 9 139814868 139814868 C T TRAF2 Silent p.C287C 0.37 TCGA-AZ-4315-01 9 139937728 139937728 T G NPDC1 Intron 0.22 TCGA-AZ-4315-01 9 140034178 140034178 G T GRIN1 Missense_Mutation p.E80D 0.37 tolerated(0.25) benign(0.032) TCGA-AZ-4315-01 9 140077641 140077641 G T ANAPC2 Missense_Mutation p.R408S 0.27 deleterious(0) probably_damaging(0.942) TCGA-AZ-4315-01 9 140110182 140110182 A G NDOR1 Missense_Mutation p.I454V 0.34 tolerated(0.22) benign(0.071) TCGA-AZ-4315-01 9 140417205 140417205 C T PNPLA7 Silent p.P284P 0.29 TCGA-AZ-4315-01 9 140648649 140648649 A C EHMT1 Missense_Mutation p.K425N 0.30 deleterious(0.01) benign(0.253) TCGA-AZ-4315-01 9 140652391 140652391 A C EHMT1 Missense_Mutation p.T477P 0.33 tolerated(0.27) benign(0.06) TCGA-AZ-4315-01 9 140686545 140686545 G A EHMT1 Intron 0.34 TCGA-AZ-4315-01 9 140712546 140712546 G A EHMT1 Missense_Mutation p.D1166N 0.33 tolerated(0.07) probably_damaging(0.957) TCGA-AZ-4315-01 9 141006918 141006918 C T CACNA1B Missense_Mutation p.P1833S 0.39 tolerated(1) benign(0.023) TCGA-AZ-4315-01 9 141070954 141070954 G A TUBBP5 RNA 0.30 TCGA-AZ-4315-01 9 14179741 14179741 C T NFIB Missense_Mutation p.A201T 0.35 tolerated(0.36) benign(0.107) TCGA-AZ-4315-01 9 14639924 14639924 G A ZDHHC21 Silent p.L197L 0.42 TCGA-AZ-4315-01 9 14722573 14722573 A G CER1 Missense_Mutation p.V33A 0.33 tolerated(0.79) benign(0.001) TCGA-AZ-4315-01 9 14759848 14759848 G T FREM1 Silent p.V1752V 0.20 TCGA-AZ-4315-01 9 14869009 14869009 C T FREM1 5'UTR 0.38 TCGA-AZ-4315-01 9 15185381 15185381 C A TTC39B Missense_Mutation p.R504I 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 9 15468720 15468720 G T PSIP1 Missense_Mutation p.S443Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 9 15623309 15623309 A C CCDC171 Missense_Mutation p.K240N 0.33 tolerated(0.18) benign(0.003) TCGA-AZ-4315-01 9 15695284 15695284 G T CCDC171 Nonsense_Mutation p.E423* 0.51 TCGA-AZ-4315-01 9 15723708 15723708 G A CCDC171 Silent p.T485T 0.39 TCGA-AZ-4315-01 9 15744452 15744452 G A CCDC171 Missense_Mutation p.R744Q 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-AZ-4315-01 9 16418779 16418779 G A BNC2 3'UTR 0.24 TCGA-AZ-4315-01 9 16419422 16419422 C T BNC2 Silent p.E955E 0.25 TCGA-AZ-4315-01 9 16435953 16435953 C T BNC2 Missense_Mutation p.E747K 0.29 tolerated(0.28) benign(0.001) TCGA-AZ-4315-01 9 18680459 18680459 C T ADAMTSL1 Missense_Mutation p.A429V 0.33 tolerated(0.76) benign(0.001) TCGA-AZ-4315-01 9 18770602 18770602 T C ADAMTSL1 Silent p.C740C 0.28 TCGA-AZ-4315-01 9 19058242 19058242 C A HAUS6 Missense_Mutation p.K841N 0.39 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 9 19058431 19058431 T G HAUS6 Missense_Mutation p.E778D 0.20 deleterious(0.01) probably_damaging(0.929) TCGA-AZ-4315-01 9 19058721 19058721 T G HAUS6 Missense_Mutation p.N682H 0.26 tolerated(0.06) benign(0.005) TCGA-AZ-4315-01 9 19089514 19089514 C T HAUS6 Silent p.Q160Q 0.23 TCGA-AZ-4315-01 9 19346443 19346443 G T DENND4C Missense_Mutation p.D1177Y 0.31 deleterious(0.02) benign(0.011) TCGA-AZ-4315-01 9 19409155 19409155 A G ACER2 Missense_Mutation p.T25A 0.26 tolerated(0.88) benign(0.006) TCGA-AZ-4315-01 9 19516227 19516227 A C SLC24A2 Missense_Mutation p.F637C 0.39 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 9 20363434 20363434 A C MLLT3 Intron 0.40 TCGA-AZ-4315-01 9 20413970 20413970 C T MLLT3 Missense_Mutation p.E292K 0.39 tolerated(1) benign(0.142) TCGA-AZ-4315-01 9 2054700 2054700 C T SMARCA2 Missense_Mutation p.R384W 0.36 possibly_damaging(0.689) TCGA-AZ-4315-01 9 2058367 2058367 A C SMARCA2 Missense_Mutation p.K475T 0.38 benign(0.02) TCGA-AZ-4315-01 9 20717828 20717828 A C FOCAD Missense_Mutation p.E31D 0.28 tolerated(0.12) possibly_damaging(0.704) TCGA-AZ-4315-01 9 20740295 20740295 A G FOCAD Silent p.E116E 0.24 TCGA-AZ-4315-01 9 2081881 2081881 G A SMARCA2 Missense_Mutation p.G745E 0.28 benign(0.042) TCGA-AZ-4315-01 9 21140914 21140914 G T IFNW1 3'UTR 0.36 TCGA-AZ-4315-01 9 21140974 21140974 G T IFNW1 3'UTR 0.34 TCGA-AZ-4315-01 9 21166650 21166650 T C IFNA21 5'UTR 0.30 TCGA-AZ-4315-01 9 21186739 21186739 A C IFNA4 3'UTR 0.36 TCGA-AZ-4315-01 9 21187208 21187208 A C IFNA4 Missense_Mutation p.F108C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 9 21304930 21304930 T C IFNA5 Missense_Mutation p.Y109C 0.32 tolerated(0.87) benign(0.002) TCGA-AZ-4315-01 9 21333883 21333883 C A KLHL9 Nonsense_Mutation p.E326* 0.45 TCGA-AZ-4315-01 9 21482073 21482073 C A IFNE 5'UTR 0.23 TCGA-AZ-4315-01 9 215844 215844 A G C9orf66 5'UTR 0.30 TCGA-AZ-4315-01 9 23762183 23762183 C G ELAVL2 Missense_Mutation p.G17A 0.38 tolerated_low_confidence(0.11) benign(0.04) TCGA-AZ-4315-01 9 26935195 26935195 C T PLAA Silent p.R53R 0.32 TCGA-AZ-4315-01 9 27047367 27047367 C T IFT74 Nonsense_Mutation p.R402* 0.24 TCGA-AZ-4315-01 9 271703 271703 A G DOCK8 Missense_Mutation p.T44A 0.33 tolerated(0.6) benign(0.001) TCGA-AZ-4315-01 9 27203023 27203023 A C TEK Missense_Mutation p.E705D 0.22 tolerated(0.15) benign(0.001) TCGA-AZ-4315-01 9 27220079 27220079 G T TEK Nonsense_Mutation p.E1046* 0.33 TCGA-AZ-4315-01 9 27548394 27548394 G T C9orf72 Missense_Mutation p.S429Y 0.32 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 9 27566901 27566901 C T C9orf72 Missense_Mutation p.R73Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 9 27950487 27950487 G T LINGO2 Silent p.I61I 0.29 TCGA-AZ-4315-01 9 32634760 32634760 G T TAF1L Missense_Mutation p.S273Y 0.31 deleterious(0.02) possibly_damaging(0.62) TCGA-AZ-4315-01 9 32985979 32985979 G T APTX Missense_Mutation p.P178H 0.40 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 9 32988085 32988085 T G APTX Missense_Mutation p.K59T 0.29 deleterious(0) possibly_damaging(0.898) TCGA-AZ-4315-01 9 33548506 33548506 G A ANKRD18B Missense_Mutation p.A512T 0.33 tolerated(0.12) probably_damaging(0.978) TCGA-AZ-4315-01 9 33986772 33986772 C T UBAP2 Missense_Mutation p.R169Q 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-AZ-4315-01 9 34241406 34241406 G A UBAP1 Missense_Mutation p.S192N 0.34 tolerated(0.67) benign(0.009) TCGA-AZ-4315-01 9 34517451 34517451 C T DNAI1 Missense_Mutation p.R663C 0.33 deleterious(0) probably_damaging(0.938) TCGA-AZ-4315-01 9 34521748 34521748 C T ENHO 5'UTR 0.22 TCGA-AZ-4315-01 9 34660928 34660928 G A IL11RA Missense_Mutation p.R416H 0.37 deleterious(0) benign(0.424) TCGA-AZ-4315-01 9 34723518 34723518 G A FAM205A Missense_Mutation p.A1240V 0.30 tolerated(0.28) benign(0.055) TCGA-AZ-4315-01 9 34723529 34723529 G T FAM205A Missense_Mutation p.F1236L 0.29 tolerated(0.51) benign(0.06) TCGA-AZ-4315-01 9 35091886 35091886 C A PIGO Missense_Mutation p.K666N 0.33 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 9 35107490 35107490 G T FAM214B Missense_Mutation p.A261D 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 9 35231179 35231179 C T UNC13B Missense_Mutation p.R39C 0.33 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-AZ-4315-01 9 35557930 35557930 C T RUSC2 Silent p.N1001N 0.45 TCGA-AZ-4315-01 9 35707793 35707793 G A TLN1 Missense_Mutation p.R1523C 0.32 deleterious(0) probably_damaging(0.979) TCGA-AZ-4315-01 9 35735145 35735145 C T CREB3 Nonsense_Mutation p.R159* 0.69 TCGA-AZ-4315-01 9 35813031 35813031 C T HINT2 3'UTR 0.41 TCGA-AZ-4315-01 9 35819233 35819233 C A FAM221B Nonsense_Mutation p.E338* 0.34 TCGA-AZ-4315-01 9 36169902 36169902 C T CCIN Missense_Mutation p.R135C 0.31 tolerated(0.18) benign(0.007) TCGA-AZ-4315-01 9 36677276 36677276 G A MELK Missense_Mutation p.G633D 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 9 37305547 37305547 C T ZCCHC7 Missense_Mutation p.R263C 0.45 deleterious(0.04) probably_damaging(0.98) TCGA-AZ-4315-01 9 37541446 37541446 C T FBXO10 Missense_Mutation p.R107Q 0.29 deleterious(0.03) probably_damaging(0.981) TCGA-AZ-4315-01 9 37731053 37731053 G A FRMPD1 Missense_Mutation p.D271N 0.28 deleterious(0.05) possibly_damaging(0.519) TCGA-AZ-4315-01 9 37744805 37744805 G A FRMPD1 Missense_Mutation p.E926K 0.33 deleterious(0.01) probably_damaging(0.91) TCGA-AZ-4315-01 9 37746411 37746411 G A FRMPD1 Missense_Mutation p.R1461H 0.41 tolerated(0.59) benign(0.004) TCGA-AZ-4315-01 9 37746564 37746564 G A FRMPD1 Missense_Mutation p.R1512H 0.28 tolerated(0.08) benign(0.026) TCGA-AZ-4315-01 9 37887836 37887836 G A SLC25A51 Missense_Mutation p.R238C 0.32 tolerated(0.08) benign(0.12) TCGA-AZ-4315-01 9 40705847 40705847 G A SPATA31A3 Silent p.K1168K 0.28 TCGA-AZ-4315-01 9 40772574 40772574 G T ZNF658 Missense_Mutation p.L901I 0.31 tolerated(0.07) benign(0.315) TCGA-AZ-4315-01 9 40772872 40772872 G A ZNF658 Silent p.N801N 0.25 TCGA-AZ-4315-01 9 40773028 40773028 T G ZNF658 Missense_Mutation p.K749N 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4315-01 9 40773291 40773291 C A ZNF658 Nonsense_Mutation p.E662* 0.34 TCGA-AZ-4315-01 9 43853595 43853595 C A CNTNAP3B Missense_Mutation p.L619I 0.17 tolerated(0.2) benign(0.296) TCGA-AZ-4315-01 9 4576641 4576641 C T SLC1A1 Silent p.F357F 0.32 TCGA-AZ-4315-01 9 4617986 4617986 G T SPATA6L Nonsense_Mutation p.S253* 0.09 TCGA-AZ-4315-01 9 4662038 4662038 T G SPATA6L Splice_Site p.X14_splice 0.33 TCGA-AZ-4315-01 9 4664201 4664201 A G PPAPDC2 3'UTR 0.24 TCGA-AZ-4315-01 9 4664327 4664327 C T PPAPDC2 3'UTR 0.36 TCGA-AZ-4315-01 9 5720642 5720642 A G KIAA1432 Silent p.V204V 0.30 TCGA-AZ-4315-01 9 5747485 5747485 C T KIAA1432 Missense_Mutation p.R478W 0.30 deleterious(0) probably_damaging(0.965) TCGA-AZ-4315-01 9 5921755 5921755 G A KIAA2026 Missense_Mutation p.S1414L 0.32 tolerated(0.08) benign(0.132) TCGA-AZ-4315-01 9 5988524 5988524 C T KIAA2026 Silent p.T205T 0.33 TCGA-AZ-4315-01 9 6012865 6012865 G A RANBP6 Missense_Mutation p.R915W 0.33 deleterious(0) benign(0.142) TCGA-AZ-4315-01 9 6329571 6329571 G T TPD52L3 3'UTR 0.27 TCGA-AZ-4315-01 9 6330206 6330206 G T TPD52L3 3'UTR 0.30 TCGA-AZ-4315-01 9 6331277 6331277 G T TPD52L3 3'Flank 0.30 TCGA-AZ-4315-01 9 6493884 6493884 A C UHRF2 Missense_Mutation p.K519T 0.13 deleterious(0) probably_damaging(0.995) TCGA-AZ-4315-01 9 6540147 6540147 C A GLDC Splice_Site p.X857_splice 0.41 TCGA-AZ-4315-01 9 6556263 6556263 T C GLDC Missense_Mutation p.T698A 0.28 deleterious(0.02) possibly_damaging(0.605) TCGA-AZ-4315-01 9 67968298 67968298 A G ANKRD20A1 Silent p.K619K 0.27 TCGA-AZ-4315-01 9 69200429 69200429 G A FOXD4L6 Missense_Mutation p.A395V 0.34 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-AZ-4315-01 9 71080087 71080087 A G PGM5 Silent p.G374G 0.31 TCGA-AZ-4315-01 9 71098906 71098906 C T PGM5 Missense_Mutation p.A474V 0.40 tolerated(0.21) benign(0.01) TCGA-AZ-4315-01 9 71144628 71144628 A G PGM5 3'UTR 0.50 TCGA-AZ-4315-01 9 71144639 71144639 C A PGM5 3'UTR 0.33 TCGA-AZ-4315-01 9 71155725 71155725 C A TMEM252 Missense_Mutation p.Q2H 0.35 deleterious(0.01) possibly_damaging(0.894) TCGA-AZ-4315-01 9 71396458 71396458 G T FAM122A 3'UTR 0.36 TCGA-AZ-4315-01 9 71628096 71628096 C T PRKACG Missense_Mutation p.A305T 0.31 tolerated(0.17) benign(0.063) TCGA-AZ-4315-01 9 71679913 71679913 G A FXN Silent p.Q148Q 0.56 TCGA-AZ-4315-01 9 71835836 71835836 G A TJP2 Missense_Mutation p.A157T 0.30 tolerated(0.3) benign(0.003) TCGA-AZ-4315-01 9 71864319 71864319 G A TJP2 Missense_Mutation p.R1001Q 0.36 tolerated(0.32) benign(0.121) TCGA-AZ-4315-01 9 71990691 71990691 G T FAM189A2 Nonsense_Mutation p.E55* 0.34 TCGA-AZ-4315-01 9 72003119 72003119 G A FAM189A2 Missense_Mutation p.R301K 0.32 tolerated(1) benign(0.002) TCGA-AZ-4315-01 9 72003170 72003170 C T FAM189A2 Missense_Mutation p.S318L 0.33 tolerated(0.71) benign(0.001) TCGA-AZ-4315-01 9 72003280 72003280 G T FAM189A2 Nonsense_Mutation p.E355* 0.36 TCGA-AZ-4315-01 9 72055996 72055996 G A APBA1 Silent p.I739I 0.38 TCGA-AZ-4315-01 9 72067053 72067053 C T APBA1 Silent p.S651S 0.33 TCGA-AZ-4315-01 9 72840934 72840934 G A MAMDC2 Missense_Mutation p.E683K 0.28 deleterious(0.02) benign(0.016) TCGA-AZ-4315-01 9 72841043 72841043 T G MAMDC2 3'UTR 0.22 TCGA-AZ-4315-01 9 72965054 72965054 C T SMC5 Nonsense_Mutation p.R972* 0.32 TCGA-AZ-4315-01 9 73167936 73167936 G A TRPM3 Missense_Mutation p.S1121L 0.27 deleterious(0) probably_damaging(0.996) TCGA-AZ-4315-01 9 73206072 73206072 C T TRPM3 Missense_Mutation p.S1021N 0.36 deleterious(0) probably_damaging(0.993) TCGA-AZ-4315-01 9 73376420 73376420 A G TRPM3 Intron 0.32 TCGA-AZ-4315-01 9 74360368 74360368 C T TMEM2 Silent p.A200A 0.37 TCGA-AZ-4315-01 9 74671006 74671006 T G C9orf57 Missense_Mutation p.E110D 0.35 deleterious(0.01) benign(0.08) TCGA-AZ-4315-01 9 74970782 74970782 G T ZFAND5 3'UTR 0.40 TCGA-AZ-4315-01 9 75315496 75315496 G T TMC1 Missense_Mutation p.R100I 0.34 deleterious(0) benign(0.032) TCGA-AZ-4315-01 9 75403344 75403344 T G TMC1 Missense_Mutation p.I325S 0.27 deleterious(0) probably_damaging(0.939) TCGA-AZ-4315-01 9 75404119 75404119 C A TMC1 Missense_Mutation p.F370L 0.39 tolerated(0.09) benign(0.037) TCGA-AZ-4315-01 9 75431071 75431071 G A TMC1 Missense_Mutation p.E570K 0.26 deleterious(0.01) possibly_damaging(0.771) TCGA-AZ-4315-01 9 75431077 75431077 G A TMC1 Missense_Mutation p.D572N 0.28 deleterious(0.04) probably_damaging(0.993) TCGA-AZ-4315-01 9 77277465 77277465 C T RORB Missense_Mutation p.R279W 0.24 deleterious(0) probably_damaging(0.98) TCGA-AZ-4315-01 9 77365627 77365627 T G TRPM6 Missense_Mutation p.K1670N 0.37 tolerated(0.68) benign(0.002) TCGA-AZ-4315-01 9 77376970 77376970 A G TRPM6 Silent p.S1539S 0.30 TCGA-AZ-4315-01 9 77423056 77423056 A G TRPM6 Missense_Mutation p.I511T 0.33 deleterious(0.02) possibly_damaging(0.847) TCGA-AZ-4315-01 9 77502746 77502746 G A TRPM6 Silent p.R9R 0.17 TCGA-AZ-4315-01 9 77632234 77632234 C A C9orf41 Nonsense_Mutation p.E121* 0.31 TCGA-AZ-4315-01 9 79003508 79003508 A G RFK Missense_Mutation p.V100A 0.42 tolerated(0.12) benign(0.127) TCGA-AZ-4315-01 9 79118768 79118768 G A GCNT1 3'UTR 0.31 TCGA-AZ-4315-01 9 79229435 79229435 T A PRUNE2 3'UTR 0.24 TCGA-AZ-4315-01 9 79244163 79244163 C A PRUNE2 Nonsense_Mutation p.E3032* 0.24 TCGA-AZ-4315-01 9 79324317 79324317 G A PRUNE2 Missense_Mutation p.S958L 0.36 tolerated(1) benign(0.038) TCGA-AZ-4315-01 9 79829255 79829255 A C VPS13A Missense_Mutation p.K236T 0.25 deleterious(0) possibly_damaging(0.501) TCGA-AZ-4315-01 9 80262627 80262627 T C GNA14 Missense_Mutation p.D28G 0.36 deleterious(0.01) benign(0.001) TCGA-AZ-4315-01 9 80881728 80881728 C A CEP78 3'UTR 0.32 TCGA-AZ-4315-01 9 82191060 82191060 T C TLE4 Missense_Mutation p.S74P 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 9 8341702 8341702 G A PTPRD Silent p.L1646L 0.30 TCGA-AZ-4315-01 9 84205889 84205889 A C TLE1 Missense_Mutation p.L554V 0.38 tolerated(0.07) probably_damaging(0.92) TCGA-AZ-4315-01 9 84530444 84530444 A C SPATA31D5P RNA 0.38 TCGA-AZ-4315-01 9 84532627 84532627 G A SPATA31D5P RNA 0.30 TCGA-AZ-4315-01 9 84562667 84562667 G T RP11-383M4.6 Intron 0.25 TCGA-AZ-4315-01 9 84608005 84608005 C T SPATA31D1 Nonsense_Mutation p.R874* 0.31 TCGA-AZ-4315-01 9 85611950 85611950 G A RASEF Nonsense_Mutation p.R633* 0.29 TCGA-AZ-4315-01 9 86294841 86294841 A G UBQLN1 Missense_Mutation p.V187A 0.37 tolerated(0.66) probably_damaging(0.93) TCGA-AZ-4315-01 9 86617158 86617158 G T RMI1 Missense_Mutation p.K419N 0.25 tolerated(0.34) benign(0.001) TCGA-AZ-4315-01 9 86617663 86617663 T G RMI1 Missense_Mutation p.L588V 0.29 deleterious(0) possibly_damaging(0.824) TCGA-AZ-4315-01 9 88287485 88287485 A G AGTPBP1 Missense_Mutation p.L183S 0.41 deleterious(0) probably_damaging(0.988) TCGA-AZ-4315-01 9 88571307 88571307 C T NAA35 Silent p.L53L 0.27 TCGA-AZ-4315-01 9 90266522 90266522 C T DAPK1 Silent p.F569F 0.26 TCGA-AZ-4315-01 9 90501418 90501418 G A SPATA31E1 Silent p.Q672Q 0.38 TCGA-AZ-4315-01 9 91616283 91616283 G A S1PR3 Silent p.E56E 0.42 TCGA-AZ-4315-01 9 92002452 92002452 G A SEMA4D Silent p.F393F 0.37 TCGA-AZ-4315-01 9 92220160 92220160 G A GADD45G Intron 0.37 TCGA-AZ-4315-01 9 93375806 93375806 C T DIRAS2 Missense_Mutation p.E102K 0.25 tolerated(0.13) benign(0.007) TCGA-AZ-4315-01 9 93624611 93624611 C T SYK Silent p.F234F 0.43 TCGA-AZ-4315-01 9 94486209 94486209 A G ROR2 Missense_Mutation p.V856A 0.26 tolerated_low_confidence(0.09) benign(0.004) TCGA-AZ-4315-01 9 94821485 94821485 T G SPTLC1 Missense_Mutation p.K222N 0.36 tolerated(0.32) benign(0.014) TCGA-AZ-4315-01 9 95030556 95030556 C T IARS Missense_Mutation p.R444Q 0.25 deleterious(0) probably_damaging(0.959) TCGA-AZ-4315-01 9 95147833 95147833 C T OGN 3'UTR 0.40 TCGA-AZ-4315-01 9 95236991 95236991 T C ASPN Silent p.R63R 0.26 TCGA-AZ-4315-01 9 95277024 95277024 G A ECM2 Missense_Mutation p.R315C 0.32 deleterious(0.03) possibly_damaging(0.489) TCGA-AZ-4315-01 9 95277057 95277057 A G ECM2 Missense_Mutation p.S304P 0.36 tolerated(0.27) benign(0.001) TCGA-AZ-4315-01 9 95277272 95277272 T G ECM2 Missense_Mutation p.E232A 0.41 tolerated(0.68) benign(0.005) TCGA-AZ-4315-01 9 95403035 95403035 T C IPPK Missense_Mutation p.K198R 0.43 tolerated(0.65) benign(0.012) TCGA-AZ-4315-01 9 95477738 95477738 C T BICD2 Missense_Mutation p.E756K 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4315-01 9 95588808 95588808 A G ANKRD19P Intron 0.32 TCGA-AZ-4315-01 9 95795140 95795140 C A FGD3 Silent p.A590A 0.34 TCGA-AZ-4315-01 9 96416729 96416729 C T PHF2 Missense_Mutation p.S275L 0.44 tolerated(0.24) unknown(0) TCGA-AZ-4315-01 9 96425264 96425264 C T PHF2 Nonsense_Mutation p.R592* 0.41 TCGA-AZ-4315-01 9 96425863 96425863 C T PHF2 Missense_Mutation p.A628V 0.34 tolerated(0.32) unknown(0) TCGA-AZ-4315-01 9 97207262 97207262 C T HIATL1 Missense_Mutation p.A176V 0.30 deleterious(0) probably_damaging(0.994) TCGA-AZ-4315-01 9 97325712 97325712 A G FBP2 Missense_Mutation p.V246A 0.25 deleterious(0.04) benign(0.008) TCGA-AZ-4315-01 9 98218572 98218572 C T PTCH1 Missense_Mutation p.V1098I 0.43 tolerated(0.06) probably_damaging(0.937) TCGA-AZ-4315-01 9 98241328 98241328 T C PTCH1 Missense_Mutation p.D390G 0.09 deleterious(0) benign(0.206) TCGA-AZ-4315-01 9 99083435 99083435 G A SLC35D2 3'UTR 0.45 TCGA-AZ-4315-01 9 99266070 99266070 G T CDC14B Missense_Mutation p.L488I 0.35 tolerated(0.4) benign(0) TCGA-AZ-4315-01 9 99521552 99521552 T G ZNF510 Missense_Mutation p.Q520H 0.34 deleterious(0) benign(0.022) TCGA-AZ-4315-01 9 99581297 99581297 T G ZNF782 Missense_Mutation p.K336N 0.29 tolerated(0.06) benign(0.004) TCGA-AZ-4315-01 9 99607231 99607231 A G ZNF782 Missense_Mutation p.V28A 0.34 tolerated(1) benign(0.001) TCGA-AZ-4315-01 9 99797976 99797976 C A CTSV Splice_Site p.X208_splice 0.37 TCGA-AZ-4315-01 X 100183246 100183246 A C XKRX Silent p.V16V 0.57 TCGA-AZ-4315-01 X 100601337 100601337 A C TIMM8A 3'UTR 0.73 TCGA-AZ-4315-01 X 100611047 100611047 C T BTK Missense_Mutation p.R520Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 X 100911417 100911417 G A ARMCX2 Silent p.R386R 0.57 TCGA-AZ-4315-01 X 101095573 101095573 G A NXF5 Missense_Mutation p.S199L 0.47 deleterious(0.05) benign(0.278) TCGA-AZ-4315-01 X 101409243 101409244 - T BEX5 5'UTR 0.42 TCGA-AZ-4315-01 X 10153202 10153202 G A CLCN4 Missense_Mutation p.D44N 0.77 tolerated(0.47) benign(0.048) TCGA-AZ-4315-01 X 101821473 101821473 C T NXF4 RNA 0.50 TCGA-AZ-4315-01 X 101823384 101823384 C T NXF4 RNA 0.48 TCGA-AZ-4315-01 X 101857954 101857954 G A ARMCX5 Silent p.P295P 0.12 TCGA-AZ-4315-01 X 101910575 101910575 A G GPRASP1 Silent p.T578T 0.69 TCGA-AZ-4315-01 X 101912547 101912547 T C GPRASP1 Missense_Mutation p.Y1236H 0.60 deleterious(0) probably_damaging(0.953) TCGA-AZ-4315-01 X 102005805 102005805 C T BHLHB9 3'UTR 0.69 TCGA-AZ-4315-01 X 102471459 102471459 C T BEX4 3'UTR 0.22 TCGA-AZ-4315-01 X 102586579 102586579 T G TCEAL7 Missense_Mutation p.F83C 0.72 deleterious(0.03) benign(0.005) TCGA-AZ-4315-01 X 102864621 102864621 C A TCEAL3 3'UTR 0.64 TCGA-AZ-4315-01 X 102968895 102968895 T G TMEM31 Missense_Mutation p.F159C 0.64 deleterious_low_confidence(0) benign(0.077) TCGA-AZ-4315-01 X 103216960 103216960 G T TMSB15B 5'Flank 0.64 TCGA-AZ-4315-01 X 105011696 105011696 G T IL1RAPL2 3'UTR 0.54 TCGA-AZ-4315-01 X 105168888 105168888 T G NRK Silent p.G1060G 0.58 TCGA-AZ-4315-01 X 105199638 105199638 C T NRK 3'UTR 0.58 TCGA-AZ-4315-01 X 105277621 105277621 G A SERPINA7 Missense_Mutation p.S373L 0.12 tolerated(0.87) benign(0) TCGA-AZ-4315-01 X 105452881 105452881 G T MUM1L1 3'UTR 0.54 TCGA-AZ-4315-01 X 106038846 106038846 C A RNF128 Missense_Mutation p.S397Y 0.61 tolerated(0.34) benign(0.106) TCGA-AZ-4315-01 X 106091524 106091524 C T TBC1D8B Nonsense_Mutation p.R610* 0.61 TCGA-AZ-4315-01 X 106092843 106092843 A C TBC1D8B Intron 0.50 TCGA-AZ-4315-01 X 106840647 106840647 C T FRMPD3 Missense_Mutation p.S546L 0.67 deleterious(0.02) benign(0.078) TCGA-AZ-4315-01 X 106846196 106846196 C T FRMPD3 Missense_Mutation p.R1676C 0.66 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 X 107097885 107097885 A G MID2 Missense_Mutation p.E256G 0.52 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-4315-01 X 107170238 107170238 C T MID2 Missense_Mutation p.R715W 0.63 deleterious_low_confidence(0) benign(0.394) TCGA-AZ-4315-01 X 107403859 107403859 G A COL4A6 Silent p.F1454F 0.70 TCGA-AZ-4315-01 X 107420159 107420159 G A COL4A6 Silent p.G867G 0.67 TCGA-AZ-4315-01 X 107976903 107976903 C T IRS4 Missense_Mutation p.R891Q 0.66 tolerated(0.37) unknown(0) TCGA-AZ-4315-01 X 107978619 107978619 T C IRS4 Missense_Mutation p.N319S 0.73 tolerated(0.05) possibly_damaging(0.461) TCGA-AZ-4315-01 X 108868174 108868174 C T KCNE1L Missense_Mutation p.A26T 0.76 tolerated(0.19) benign(0.096) TCGA-AZ-4315-01 X 108906571 108906571 T G ACSL4 Missense_Mutation p.N525T 0.68 tolerated(0.09) probably_damaging(0.998) TCGA-AZ-4315-01 X 109697346 109697346 G T RGAG1 Missense_Mutation p.E1167D 0.60 tolerated_low_confidence(0.13) benign(0.078) TCGA-AZ-4315-01 X 109697439 109697439 G T RGAG1 Missense_Mutation p.E1198D 0.63 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AZ-4315-01 X 110494452 110494452 T C CAPN6 Missense_Mutation p.D319G 0.78 deleterious(0) probably_damaging(0.945) TCGA-AZ-4315-01 X 110970570 110970570 C T ALG13 Missense_Mutation p.R663W 0.65 deleterious(0) benign(0.002) TCGA-AZ-4315-01 X 111090573 111090573 G A TRPC5 Missense_Mutation p.S490L 0.69 deleterious(0.04) probably_damaging(0.914) TCGA-AZ-4315-01 X 111698387 111698387 T C ZCCHC16 Missense_Mutation p.I144T 0.67 tolerated(0.47) benign(0.002) TCGA-AZ-4315-01 X 112033862 112033862 C T AMOT Missense_Mutation p.R692K 0.54 unknown(0) TCGA-AZ-4315-01 X 112053120 112053120 A G AMOT Splice_Site p.X544_splice 0.59 TCGA-AZ-4315-01 X 114863573 114863573 G T PLS3 Nonsense_Mutation p.E101* 0.59 TCGA-AZ-4315-01 X 114953056 114953056 T C RP1-241P17.4 3'UTR 0.75 TCGA-AZ-4315-01 X 114953115 114953115 G T RP1-241P17.4 3'UTR 0.78 TCGA-AZ-4315-01 X 117035805 117035805 A G KLHL13 Missense_Mutation p.Y494H 0.66 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 X 117543546 117543546 C T WDR44 Missense_Mutation p.A543V 0.54 deleterious(0.01) possibly_damaging(0.76) TCGA-AZ-4315-01 X 117695426 117695426 T G DOCK11 Missense_Mutation p.N213K 0.59 tolerated(1) possibly_damaging(0.584) TCGA-AZ-4315-01 X 118215413 118215413 T G KIAA1210 Missense_Mutation p.K1670T 0.68 tolerated(0.07) possibly_damaging(0.529) TCGA-AZ-4315-01 X 118679450 118679450 C T CXorf56 Missense_Mutation p.R87Q 0.62 tolerated(0.35) benign(0.13) TCGA-AZ-4315-01 X 119054485 119054485 G A AKAP14 Missense_Mutation p.R170H 0.62 tolerated(0.17) possibly_damaging(0.861) TCGA-AZ-4315-01 X 119293044 119293044 G A RHOXF2 Missense_Mutation p.G68E 0.49 tolerated(0.14) probably_damaging(0.931) TCGA-AZ-4315-01 X 119394780 119394780 C T TMEM255A Missense_Mutation p.R332H 0.76 tolerated(0.48) unknown(0) TCGA-AZ-4315-01 X 119445272 119445272 G A TMEM255A 5'UTR 0.71 TCGA-AZ-4315-01 X 119504598 119504598 C A ATP1B4 Missense_Mutation p.F119L 0.72 tolerated(0.24) benign(0.139) TCGA-AZ-4315-01 X 119565128 119565128 A C LAMP2 Intron 0.72 TCGA-AZ-4315-01 X 119760273 119760273 G T C1GALT1C1 Missense_Mutation p.S250Y 0.68 deleterious(0.04) possibly_damaging(0.694) TCGA-AZ-4315-01 X 120009207 120009207 G A CT47B1 Silent p.F106F 0.74 TCGA-AZ-4315-01 X 120009264 120009264 G A CT47B1 Silent p.I87I 0.57 TCGA-AZ-4315-01 X 122599627 122599627 C T GRIA3 Silent p.G809G 0.67 TCGA-AZ-4315-01 X 122747496 122747496 C T THOC2 Missense_Mutation p.G1505R 0.64 tolerated(0.06) possibly_damaging(0.839) TCGA-AZ-4315-01 X 123041016 123041016 A C XIAP Missense_Mutation p.K493N 0.67 deleterious(0.01) benign(0.076) TCGA-AZ-4315-01 X 123519748 123519748 G T TENM1 Missense_Mutation p.S1952Y 0.64 deleterious(0) benign(0.361) TCGA-AZ-4315-01 X 123654475 123654475 G A TENM1 Nonsense_Mutation p.R1065* 0.66 TCGA-AZ-4315-01 X 123870944 123870944 C T TENM1 Silent p.A213A 0.59 TCGA-AZ-4315-01 X 124028174 124028174 T C TENM1 Missense_Mutation p.D169G 0.68 tolerated_low_confidence(0.39) benign(0) TCGA-AZ-4315-01 X 12725710 12725710 C T FRMPD4 Silent p.I470I 0.55 TCGA-AZ-4315-01 X 12734640 12734640 C T FRMPD4 Missense_Mutation p.L688F 0.67 deleterious_low_confidence(0.02) possibly_damaging(0.467) TCGA-AZ-4315-01 X 12905989 12905989 A G TLR7 Missense_Mutation p.T788A 0.63 deleterious(0.01) benign(0.129) TCGA-AZ-4315-01 X 129318317 129318317 A C RAB33A Missense_Mutation p.Y106S 0.65 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 X 129361712 129361712 G T ZNF280C Missense_Mutation p.L398I 0.61 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 X 129546356 129546356 A C RBMX2 Missense_Mutation p.K168T 0.70 deleterious(0.05) benign(0.265) TCGA-AZ-4315-01 X 129629455 129629455 T C RP1-274L7.1 Intron 0.60 TCGA-AZ-4315-01 X 129790663 129790663 G A ENOX2 Missense_Mutation p.R370C 0.66 deleterious(0) probably_damaging(0.991) TCGA-AZ-4315-01 X 130220557 130220557 G T ARHGAP36 Missense_Mutation p.E468D 0.53 deleterious(0.02) possibly_damaging(0.719) TCGA-AZ-4315-01 X 130409052 130409052 G T IGSF1 Silent p.I1136I 0.67 TCGA-AZ-4315-01 X 132160553 132160553 C A USP26 Nonsense_Mutation p.E566* 0.61 TCGA-AZ-4315-01 X 132160804 132160804 G A USP26 Missense_Mutation p.T482I 0.66 tolerated(0.16) benign(0.111) TCGA-AZ-4315-01 X 134126467 134126467 C A SMIM10 3'UTR 0.59 TCGA-AZ-4315-01 X 134987501 134987501 T G SAGE1 Missense_Mutation p.L135R 0.77 tolerated(0.15) benign(0.242) TCGA-AZ-4315-01 X 134989130 134989130 G A SAGE1 Missense_Mutation p.G261D 0.63 tolerated(0.14) benign(0.359) TCGA-AZ-4315-01 X 135302997 135302997 A C MAP7D3 Missense_Mutation p.Y805D 0.73 deleterious(0.05) possibly_damaging(0.741) TCGA-AZ-4315-01 X 135430258 135430258 T C GPR112 Missense_Mutation p.S1465P 0.63 tolerated(0.16) benign(0.03) TCGA-AZ-4315-01 X 135572510 135572510 C A BRS3 Missense_Mutation p.S218Y 0.61 deleterious(0) probably_damaging(0.974) TCGA-AZ-4315-01 X 135770100 135770100 T G ARHGEF6 Missense_Mutation p.K412N 0.61 deleterious(0) benign(0.367) TCGA-AZ-4315-01 X 136113612 136113612 G A GPR101 Silent p.L74L 0.72 TCGA-AZ-4315-01 X 138664500 138664500 C A MCF2 3'UTR 0.69 TCGA-AZ-4315-01 X 138669938 138669939 - T MCF2 Frame_Shift_Ins p.R896Kfs*12 0.41 TCGA-AZ-4315-01 X 138845531 138845531 G A ATP11C Missense_Mutation p.S816L 0.89 deleterious(0) possibly_damaging(0.895) TCGA-AZ-4315-01 X 138850428 138850428 C T ATP11C Silent p.Q797Q 0.73 TCGA-AZ-4315-01 X 138856893 138856893 C A ATP11C Missense_Mutation p.K727N 0.65 deleterious(0.02) benign(0.097) TCGA-AZ-4315-01 X 138864829 138864829 C A ATP11C Missense_Mutation p.R613I 0.74 tolerated(0.1) benign(0.005) TCGA-AZ-4315-01 X 139866655 139866655 C T CDR1 5'UTR 0.71 TCGA-AZ-4315-01 X 14027142 14027142 C T GEMIN8 Missense_Mutation p.D207N 0.65 tolerated(0.34) benign(0.031) TCGA-AZ-4315-01 X 1407700 1407700 C T CSF2RA Missense_Mutation p.A131V 0.36 tolerated(0.3) benign(0.062) TCGA-AZ-4315-01 X 140785608 140785608 G A SPANXD 3'UTR 0.61 TCGA-AZ-4315-01 X 140786652 140786652 A G SPANXD 5'UTR 0.57 TCGA-AZ-4315-01 X 140985322 140985322 T C MAGEC3 Intron 0.65 TCGA-AZ-4315-01 X 142596632 142596632 C A SPANXN3 3'UTR 0.62 TCGA-AZ-4315-01 X 142717954 142717954 C T SLITRK4 Missense_Mutation p.R324H 0.64 tolerated(0.08) benign(0.005) TCGA-AZ-4315-01 X 142795377 142795377 C T SPANXN2 Missense_Mutation p.D101N 0.58 tolerated(0.08) unknown(0) TCGA-AZ-4315-01 X 1428485 1428485 A G CSF2RA 3'UTR 0.29 TCGA-AZ-4315-01 X 142967687 142967687 C T UBE2NL 3'UTR 0.63 TCGA-AZ-4315-01 X 144903900 144903900 G - SLITRK2 5'UTR 0.31 TCGA-AZ-4315-01 X 145075853 145075853 C T MIR890 RNA 0.58 TCGA-AZ-4315-01 X 145076340 145076340 A C MIR888 RNA 0.45 TCGA-AZ-4315-01 X 14883283 14883283 T G FANCB Missense_Mutation p.K117T 0.62 deleterious(0.04) benign(0.273) TCGA-AZ-4315-01 X 149013271 149013271 C T MAGEA8 Silent p.T75T 0.71 TCGA-AZ-4315-01 X 149100693 149100693 G A CXorf40B 3'UTR 0.70 TCGA-AZ-4315-01 X 14929502 14929502 T G MOSPD2 Missense_Mutation p.I282M 0.62 tolerated(0.19) benign(0.002) TCGA-AZ-4315-01 X 149931091 149931091 G A MTMR1 Silent p.Q629Q 0.65 TCGA-AZ-4315-01 X 149963726 149963726 C T CD99L2 Missense_Mutation p.R128Q 0.75 tolerated(0.28) benign(0.053) TCGA-AZ-4315-01 X 1499975 1499975 A G IL3RA Missense_Mutation p.D347G 0.29 tolerated(0.16) benign(0.049) TCGA-AZ-4315-01 X 150789969 150789969 T G PASD1 Missense_Mutation p.F108C 0.70 deleterious(0) probably_damaging(0.998) TCGA-AZ-4315-01 X 150912497 150912497 A G CNGA2 Missense_Mutation p.T508A 0.63 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 X 151899673 151899673 G T MAGEA12 3'UTR 0.61 TCGA-AZ-4315-01 X 151996462 151996462 C A CETN2 Nonsense_Mutation p.E148* 0.65 TCGA-AZ-4315-01 X 152614013 152614013 G A ZNF275 3'UTR 0.70 TCGA-AZ-4315-01 X 152615943 152615943 C T ZNF275 3'UTR 0.64 TCGA-AZ-4315-01 X 152771463 152771463 G A BGN Missense_Mutation p.R165H 0.62 tolerated(0.06) probably_damaging(0.996) TCGA-AZ-4315-01 X 152772362 152772362 C T BGN Missense_Mutation p.R251C 0.48 deleterious(0.01) possibly_damaging(0.696) TCGA-AZ-4315-01 X 152822432 152822432 G A ATP2B3 Missense_Mutation p.G795D 0.63 deleterious(0) probably_damaging(0.989) TCGA-AZ-4315-01 X 152990901 152990901 C T ABCD1 Silent p.V60V 0.90 TCGA-AZ-4315-01 X 153295832 153295832 C T MECP2 Missense_Mutation p.E495K 0.73 deleterious(0) unknown(0) TCGA-AZ-4315-01 X 15333553 15333553 T G ASB11 Missense_Mutation p.I59L 0.57 tolerated(0.4) benign(0.001) TCGA-AZ-4315-01 X 153461570 153461570 C T OPN1MW 3'UTR 0.27 TCGA-AZ-4315-01 X 153539362 153539362 C T TKTL1 Missense_Mutation p.R176C 0.81 deleterious(0.01) possibly_damaging(0.751) TCGA-AZ-4315-01 X 153588786 153588786 T C FLNA Missense_Mutation p.Y1126C 0.59 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 X 155005445 155005445 G T SPRY3 3'UTR 0.32 TCGA-AZ-4315-01 X 155010174 155010174 T C SPRY3 3'UTR 0.33 TCGA-AZ-4315-01 X 155011313 155011313 G A SPRY3 3'UTR 0.33 TCGA-AZ-4315-01 X 155171623 155171623 G T VAMP7 Missense_Mutation p.K201N 0.34 deleterious_low_confidence(0) unknown(0) TCGA-AZ-4315-01 X 15568010 15568010 T G BMX Missense_Mutation p.L615V 0.55 tolerated(0.08) possibly_damaging(0.749) TCGA-AZ-4315-01 X 15582272 15582272 C T ACE2 Silent p.Q728Q 0.76 TCGA-AZ-4315-01 X 1585384 1585384 G A P2RY8 Missense_Mutation p.A23V 0.27 tolerated(0.28) benign(0.122) TCGA-AZ-4315-01 X 16859607 16859607 G T TXLNG Missense_Mutation p.E435D 0.61 deleterious(0.01) possibly_damaging(0.904) TCGA-AZ-4315-01 X 16870679 16870679 A C RBBP7 Missense_Mutation p.F364V 0.64 deleterious(0.04) possibly_damaging(0.908) TCGA-AZ-4315-01 X 17072948 17072948 A G REPS2 Missense_Mutation p.D330G 0.61 deleterious(0) possibly_damaging(0.471) TCGA-AZ-4315-01 X 18195868 18195868 C T BEND2 Missense_Mutation p.R484K 0.50 deleterious(0.01) probably_damaging(0.987) TCGA-AZ-4315-01 X 19431519 19431519 C T MAP3K15 Missense_Mutation p.E552K 0.64 deleterious(0.05) benign(0.051) TCGA-AZ-4315-01 X 21450738 21450738 C A CNKSR2 Silent p.G79G 0.74 TCGA-AZ-4315-01 X 21609255 21609256 - A CNKSR2 Frame_Shift_Ins p.Y594Ifs*15 0.38 TCGA-AZ-4315-01 X 22094544 22094544 G A PHEX Missense_Mutation p.E130K 0.07 tolerated(0.54) benign(0.342) TCGA-AZ-4315-01 X 24229388 24229388 G A ZFX Silent p.T771T 0.75 TCGA-AZ-4315-01 X 24544330 24544330 A C PDK3 Missense_Mutation p.K230T 0.59 tolerated(0.06) benign(0.004) TCGA-AZ-4315-01 X 24557252 24557252 G A PDK3 Missense_Mutation p.D407N 0.69 tolerated_low_confidence(0.38) benign(0) TCGA-AZ-4315-01 X 24690763 24690764 - T PCYT1B 5'UTR 0.44 TCGA-AZ-4315-01 X 2761348 2761348 G A GYG2 Silent p.T65T 0.70 TCGA-AZ-4315-01 X 2772079 2772079 G A GYG2 Missense_Mutation p.D101N 0.61 deleterious(0) possibly_damaging(0.901) TCGA-AZ-4315-01 X 27997672 27997672 G A DCAF8L1 Nonsense_Mutation p.R594* 0.67 TCGA-AZ-4315-01 X 27998446 27998446 C T DCAF8L1 Missense_Mutation p.G336R 0.73 deleterious(0) probably_damaging(0.963) TCGA-AZ-4315-01 X 30237103 30237103 G T MAGEB2 Nonsense_Mutation p.E136* 0.68 TCGA-AZ-4315-01 X 3238183 3238183 G T MXRA5 Missense_Mutation p.S1848Y 0.22 deleterious(0.03) benign(0.127) TCGA-AZ-4315-01 X 3242790 3242790 T G MXRA5 Missense_Mutation p.Q312H 0.61 tolerated(0.12) benign(0.035) TCGA-AZ-4315-01 X 32456489 32456489 G A DMD Nonsense_Mutation p.R1314* 0.60 TCGA-AZ-4315-01 X 33357495 33357495 C A DMD 5'UTR 0.70 TCGA-AZ-4315-01 X 34961813 34961813 G A FAM47B Missense_Mutation p.E289K 0.70 tolerated(1) benign(0.004) TCGA-AZ-4315-01 X 34962030 34962030 G A FAM47B Missense_Mutation p.R361Q 0.50 tolerated(0.36) benign(0.001) TCGA-AZ-4315-01 X 35821057 35821057 G A MAGEB16 Missense_Mutation p.M248I 0.07 deleterious(0) benign(0.003) TCGA-AZ-4315-01 X 35985835 35985835 T C CXorf22 Missense_Mutation p.M567T 0.67 tolerated(0.43) benign(0.001) TCGA-AZ-4315-01 X 35988991 35988991 T C CXorf22 Missense_Mutation p.Y641H 0.62 tolerated(0.06) benign(0.188) TCGA-AZ-4315-01 X 37029564 37029564 C T FAM47C Silent p.D1027D 0.65 TCGA-AZ-4315-01 X 37981418 37981418 G T SYTL5 Missense_Mutation p.K619N 0.58 deleterious(0.01) probably_damaging(0.956) TCGA-AZ-4315-01 X 38226680 38226680 G A OTC Missense_Mutation p.E72K 0.55 tolerated(0.27) possibly_damaging(0.849) TCGA-AZ-4315-01 X 38268187 38268187 T C OTC Missense_Mutation p.V259A 0.68 deleterious(0.05) benign(0.177) TCGA-AZ-4315-01 X 38280411 38280411 G T OTC 3'UTR 0.64 TCGA-AZ-4315-01 X 39911590 39911590 A G BCOR Silent p.F1680F 0.73 TCGA-AZ-4315-01 X 40495839 40495839 C A CXorf38 Missense_Mutation p.E249D 0.64 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4315-01 X 41091690 41091690 G T USP9X Missense_Mutation p.M2542I 0.58 tolerated_low_confidence(0.13) benign(0.001) TCGA-AZ-4315-01 X 41555920 41555920 G A GPR34 Missense_Mutation p.R345Q 0.71 tolerated(0.12) benign(0.241) TCGA-AZ-4315-01 X 41586718 41586718 C T GPR82 Missense_Mutation p.R147C 0.68 tolerated(0.12) benign(0.131) TCGA-AZ-4315-01 X 43655118 43655118 G A MAOB Silent p.G212G 0.48 TCGA-AZ-4315-01 X 43703142 43703142 G T MAOB Intron 0.62 TCGA-AZ-4315-01 X 44091783 44091783 G A EFHC2 Missense_Mutation p.R522C 0.69 tolerated(0.14) benign(0.039) TCGA-AZ-4315-01 X 45011202 45011202 C A CXorf36 Missense_Mutation p.D333Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 X 46898414 46898414 C T JADE3 Missense_Mutation p.R307W 0.73 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 X 47498481 47498481 G A ELK1 Missense_Mutation p.S156L 0.64 deleterious(0.01) benign(0.12) TCGA-AZ-4315-01 X 47867856 47867856 T G SPACA5 Missense_Mutation p.I76M 0.32 deleterious(0.01) probably_damaging(0.939) TCGA-AZ-4315-01 X 47918103 47918103 A G ZNF630 Silent p.C576C 0.73 TCGA-AZ-4315-01 X 47919500 47919500 A C ZNF630 Missense_Mutation p.S111A 0.63 tolerated(0.2) benign(0.034) TCGA-AZ-4315-01 X 48244071 48244071 C T SSX4 Silent p.I46I 0.12 TCGA-AZ-4315-01 X 48270239 48270239 G A SSX4B Silent p.I46I 0.35 TCGA-AZ-4315-01 X 48631942 48631942 A T GLOD5 3'UTR 0.50 TCGA-AZ-4315-01 X 48831600 48831600 C T GRIPAP1 Silent p.E800E 0.71 TCGA-AZ-4315-01 X 49069198 49069198 G A CACNA1F Missense_Mutation p.R1302W 0.67 deleterious(0) possibly_damaging(0.869) TCGA-AZ-4315-01 X 49074384 49074384 G A CACNA1F Silent p.F1014F 0.68 TCGA-AZ-4315-01 X 50350944 50350944 C T SHROOM4 Silent p.A1066A 0.65 TCGA-AZ-4315-01 X 51640362 51640362 G A MAGED1 Missense_Mutation p.R550H 0.58 tolerated_low_confidence(0.05) possibly_damaging(0.553) TCGA-AZ-4315-01 X 53409534 53409534 C T SMC1A Missense_Mutation p.E1060K 0.74 deleterious(0) probably_damaging(0.961) TCGA-AZ-4315-01 X 53658403 53658403 G A HUWE1 Missense_Mutation p.S242F 0.21 probably_damaging(0.958) TCGA-AZ-4315-01 X 54337636 54337636 A C WNK3 Missense_Mutation p.F209C 0.57 deleterious(0) probably_damaging(1) TCGA-AZ-4315-01 X 54359745 54359745 A G WNK3 Missense_Mutation p.F121S 0.69 tolerated(0.79) benign(0.001) TCGA-AZ-4315-01 X 54841865 54841865 G A MAGED2 Missense_Mutation p.G524E 0.68 deleterious(0) probably_damaging(0.925) TCGA-AZ-4315-01 X 54949439 54949439 C T TRO Silent p.G158G 0.64 TCGA-AZ-4315-01 X 54957195 54957195 C T TRO Silent p.G1346G 0.70 TCGA-AZ-4315-01 X 55047634 55047634 A G ALAS2 Silent p.R163R 0.66 TCGA-AZ-4315-01 X 55479290 55479290 C A MAGEH1 Missense_Mutation p.F161L 0.65 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-AZ-4315-01 X 55479617 55479617 G A MAGEH1 3'UTR 0.62 TCGA-AZ-4315-01 X 55479992 55479992 G A MAGEH1 3'UTR 0.57 TCGA-AZ-4315-01 X 55650465 55650465 T G FOXR2 Missense_Mutation p.I107M 0.45 tolerated(0.25) benign(0.01) TCGA-AZ-4315-01 X 55650607 55650607 A G FOXR2 Missense_Mutation p.T155A 0.67 tolerated(0.16) benign(0.017) TCGA-AZ-4315-01 X 57936021 57936021 G A ZXDA Silent p.F278F 0.59 TCGA-AZ-4315-01 X 5821228 5821228 G A NLGN4X Silent p.F497F 0.69 TCGA-AZ-4315-01 X 5947387 5947387 C T NLGN4X Missense_Mutation p.G187S 0.58 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 X 5950735 5950735 C T NLGN4X Intron 0.70 TCGA-AZ-4315-01 X 63410343 63410343 G A AMER1 Nonsense_Mutation p.R942* 0.67 TCGA-AZ-4315-01 X 63411188 63411188 C T AMER1 Missense_Mutation p.G660D 0.74 deleterious(0.01) probably_damaging(0.988) TCGA-AZ-4315-01 X 63445553 63445553 A G ASB12 Intron 0.42 TCGA-AZ-4315-01 X 64956698 64956698 A G MSN Missense_Mutation p.E334G 0.60 deleterious(0.01) benign(0.068) TCGA-AZ-4315-01 X 65428020 65428020 G A HEPH Missense_Mutation p.R886H 0.71 deleterious(0.04) benign(0.082) TCGA-AZ-4315-01 X 68749004 68749004 A G FAM155B Missense_Mutation p.T344A 0.70 deleterious(0.04) benign(0.009) TCGA-AZ-4315-01 X 69282602 69282602 C T OTUD6A Silent p.V76V 0.81 TCGA-AZ-4315-01 X 69573596 69573596 C T KIF4A Missense_Mutation p.A538V 0.63 deleterious(0.01) probably_damaging(0.977) TCGA-AZ-4315-01 X 7023871 7023871 G A HDHD1 Missense_Mutation p.R47W 0.50 deleterious(0) benign(0.037) TCGA-AZ-4315-01 X 70316284 70316284 T C FOXO4 5'UTR 0.54 TCGA-AZ-4315-01 X 70389792 70389792 C T NLGN3 Missense_Mutation p.R798C 0.66 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-AZ-4315-01 X 70514084 70514084 G A NONO Missense_Mutation p.R119Q 0.50 deleterious(0.04) benign(0.377) TCGA-AZ-4315-01 X 70613190 70613190 C T TAF1 Missense_Mutation p.R1051C 0.66 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 X 70832373 70832373 A G ACRC Missense_Mutation p.Y640C 0.62 unknown(0) TCGA-AZ-4315-01 X 71359816 71359816 C T NHSL2 Silent p.G806G 0.72 TCGA-AZ-4315-01 X 71424844 71424844 A G ERCC6L 3'UTR 0.75 TCGA-AZ-4315-01 X 71425092 71425092 A G ERCC6L Silent p.G1175G 0.71 TCGA-AZ-4315-01 X 72225482 72225482 A C PABPC1L2B 3'UTR 0.67 TCGA-AZ-4315-01 X 72433112 72433112 A G NAP1L2 Missense_Mutation p.L406S 0.62 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 X 72667221 72667221 C T CDX4 Silent p.F44F 0.73 TCGA-AZ-4315-01 X 75648502 75648502 C T MAGEE1 Missense_Mutation p.A60V 0.65 tolerated_low_confidence(0.12) benign(0.007) TCGA-AZ-4315-01 X 76918884 76918884 T C ATRX Silent p.R1369R 0.09 TCGA-AZ-4315-01 X 76937356 76937356 C A ATRX Missense_Mutation p.R1131I 0.58 possibly_damaging(0.613) TCGA-AZ-4315-01 X 77258668 77258668 G T ATP7A Nonsense_Mutation p.E548* 0.78 TCGA-AZ-4315-01 X 77381579 77381579 T C PGK1 3'UTR 0.33 TCGA-AZ-4315-01 X 77528144 77528144 A C CYSLTR1 3'UTR 0.71 TCGA-AZ-4315-01 X 77528652 77528652 A C CYSLTR1 Missense_Mutation p.F198V 0.65 tolerated(0.07) probably_damaging(0.913) TCGA-AZ-4315-01 X 77529253 77529253 C T CYSLTR1 5'UTR 0.62 TCGA-AZ-4315-01 X 78216864 78216864 G A P2RY10 Missense_Mutation p.A283T 0.66 tolerated(0.93) benign(0.001) TCGA-AZ-4315-01 X 79698683 79698683 G T FAM46D Missense_Mutation p.M215I 0.62 tolerated(0.08) possibly_damaging(0.877) TCGA-AZ-4315-01 X 79699914 79699914 C T FAM46D 3'UTR 0.71 TCGA-AZ-4315-01 X 79936867 79936867 G A BRWD3 Missense_Mutation p.R1543W 0.59 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-AZ-4315-01 X 79942391 79942391 G A BRWD3 Nonsense_Mutation p.R1326* 0.56 TCGA-AZ-4315-01 X 80532493 80532493 A C SH3BGRL Missense_Mutation p.K19T 0.55 deleterious(0) possibly_damaging(0.829) TCGA-AZ-4315-01 X 8137995 8137995 A G VCX2 3'UTR 0.53 TCGA-AZ-4315-01 X 83128379 83128379 G T CYLC1 Missense_Mutation p.K221N 0.21 tolerated(0.66) possibly_damaging(0.607) TCGA-AZ-4315-01 X 83128546 83128546 C A CYLC1 Missense_Mutation p.S277Y 0.60 tolerated_low_confidence(0.05) unknown(0) TCGA-AZ-4315-01 X 83372073 83372073 C T RPS6KA6 Missense_Mutation p.R315K 0.60 deleterious(0.01) probably_damaging(0.982) TCGA-AZ-4315-01 X 83576866 83576866 A C HDX 3'UTR 0.67 TCGA-AZ-4315-01 X 83724171 83724171 T C HDX Missense_Mutation p.N187S 0.62 tolerated(0.96) benign(0.178) TCGA-AZ-4315-01 X 84558473 84558473 C A POF1B Nonsense_Mutation p.E530* 0.65 TCGA-AZ-4315-01 X 8503693 8503693 G A KAL1 Missense_Mutation p.T594M 0.10 deleterious(0.01) probably_damaging(0.961) TCGA-AZ-4315-01 X 86087147 86087147 T C DACH2 Missense_Mutation p.Y597H 0.72 tolerated_low_confidence(0.4) benign(0) TCGA-AZ-4315-01 X 88009126 88009126 C T CPXCR1 Silent p.L237L 0.67 TCGA-AZ-4315-01 X 88009511 88009511 G A CPXCR1 3'UTR 0.61 TCGA-AZ-4315-01 X 90692997 90692997 G T PABPC5 3'UTR 0.53 TCGA-AZ-4315-01 X 91091032 91091032 G A PCDH11X Missense_Mutation p.E177K 0.57 tolerated(0.11) benign(0.023) TCGA-AZ-4315-01 X 91873317 91873317 A G PCDH11X Missense_Mutation p.Q1141R 0.52 tolerated(0.63) benign(0.371) TCGA-AZ-4315-01 X 92966628 92966628 G T FAM133A 3'UTR 0.59 TCGA-AZ-4315-01 X 92966842 92966842 A G FAM133A 3'UTR 0.66 TCGA-AZ-4315-01 X 9914860 9914860 C T SHROOM2 Silent p.F1578F 0.64 TCGA-AZ-4315-01 X 99657800 99657800 T G PCDH19 Missense_Mutation p.K780Q 0.62 tolerated(0.05) possibly_damaging(0.864) TCGA-AZ-4315-01 X 99661801 99661801 C T PCDH19 Missense_Mutation p.E599K 0.72 deleterious(0.01) probably_damaging(0.969) TCGA-AZ-4315-01 Y 14883079 14883079 A C USP9Y Missense_Mutation p.N660H 0.71 deleterious(0.02) possibly_damaging(0.905) TCGA-AZ-4315-01 Y 14903483 14903483 A G USP9Y Missense_Mutation p.I1247V 0.68 tolerated(0.66) benign(0) TCGA-AZ-4315-01 Y 14953040 14953040 C T USP9Y Missense_Mutation p.R2065C 0.74 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 Y 15027058 15027058 G A DDX3Y Missense_Mutation p.R313H 0.70 deleterious(0.05) benign(0.083) TCGA-AZ-4315-01 Y 16845426 16845426 G A NLGN4Y Intron 0.57 TCGA-AZ-4315-01 Y 21868341 21868341 G A KDM5D Missense_Mutation p.R1419C 0.71 deleterious(0.04) benign(0.014) TCGA-AZ-4315-01 Y 21883189 21883189 C T KDM5D Silent p.A460A 0.68 TCGA-AZ-4315-01 Y 4966754 4966754 G A PCDH11Y Missense_Mutation p.D379N 0.41 deleterious(0) probably_damaging(0.999) TCGA-AZ-4315-01 Y 4967713 4967713 C A PCDH11Y Silent p.V698V 0.69 TCGA-AZ-4315-01 Y 6734111 6734111 C A AMELY 3'UTR 0.69 TCGA-AZ-4323-01 10 70644782 70644782 G A STOX1 Silent p.E410E 0.11 TCGA-AZ-4323-01 10 74813221 74813221 G A P4HA1 Silent p.G197G 0.11 TCGA-AZ-4323-01 10 7618482 7618482 C T ITIH5 Missense_Mutation p.G638S 0.15 tolerated(0.73) benign(0.052) TCGA-AZ-4323-01 11 3039932 3039932 G T CARS Silent p.G481G 0.11 TCGA-AZ-4323-01 11 61580110 61580110 G A FADS1 Missense_Mutation p.R173W 0.24 deleterious(0.03) probably_damaging(0.924) TCGA-AZ-4323-01 11 63753891 63753891 C T OTUB1 5'UTR 0.08 TCGA-AZ-4323-01 12 5022473 5022473 C T KCNA1 3'UTR 0.06 TCGA-AZ-4323-01 12 51663067 51663067 A G SMAGP 5'UTR 0.08 TCGA-AZ-4323-01 12 52314549 52314549 T C ACVRL1 Missense_Mutation p.S462P 0.08 tolerated(0.06) possibly_damaging(0.827) TCGA-AZ-4323-01 12 68716957 68716957 C A MDM1 Nonsense_Mutation p.E233* 0.06 TCGA-AZ-4323-01 12 97084938 97084938 A G C12orf55 Silent p.K2038K 0.09 TCGA-AZ-4323-01 13 97999070 97999070 T C MBNL2 Missense_Mutation p.F185L 0.10 deleterious(0.01) possibly_damaging(0.714) TCGA-AZ-4323-01 14 102800972 102800972 C A ZNF839 Missense_Mutation p.L500I 0.11 deleterious(0) probably_damaging(0.994) TCGA-AZ-4323-01 14 20344538 20344538 A T OR4K2 Missense_Mutation p.T38S 0.06 tolerated(0.52) benign(0.081) TCGA-AZ-4323-01 14 64626159 64626159 A G SYNE2 Missense_Mutation p.R5365G 0.09 probably_damaging(0.999) TCGA-AZ-4323-01 15 74241897 74241897 C A LOXL1 Missense_Mutation p.T567K 0.27 tolerated(0.22) probably_damaging(0.976) TCGA-AZ-4323-01 16 15224099 15224099 C A RP11-1186N24.5 RNA 0.16 TCGA-AZ-4323-01 16 2282575 2282575 C T E4F1 Missense_Mutation p.T243M 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-4323-01 16 30732065 30732065 C T SRCAP Missense_Mutation p.R1007W 0.15 unknown(0) TCGA-AZ-4323-01 16 771643 771643 T C FAM173A Missense_Mutation p.S70P 0.09 tolerated(0.07) possibly_damaging(0.786) TCGA-AZ-4323-01 16 77401425 77401425 G T ADAMTS18 Missense_Mutation p.H231N 0.11 tolerated(0.28) benign(0.001) TCGA-AZ-4323-01 17 27441964 27441964 G A MYO18A Silent p.H824H 0.18 TCGA-AZ-4323-01 17 51901607 51901607 G A KIF2B Missense_Mutation p.E405K 0.11 tolerated(0.11) benign(0.039) TCGA-AZ-4323-01 17 7578445 7578445 A T TP53 Missense_Mutation p.I162N 0.33 deleterious(0) probably_damaging(0.99) TCGA-AZ-4323-01 18 32826112 32826112 T C ZNF397 Silent p.Y481Y 0.07 TCGA-AZ-4323-01 19 12273936 12273936 T C ZNF136 5'UTR 0.12 TCGA-AZ-4323-01 19 41292855 41292855 C T RAB4B Missense_Mutation p.P210L 0.12 tolerated(0.08) benign(0.018) TCGA-AZ-4323-01 19 7618851 7618851 T C PNPLA6 Missense_Mutation p.V794A 0.12 deleterious(0) benign(0.266) TCGA-AZ-4323-01 19 8966755 8966755 G A MUC16 Missense_Mutation p.R14400W 0.09 possibly_damaging(0.852) TCGA-AZ-4323-01 1 103491857 103491857 T G COL11A1 Missense_Mutation p.Y271S 0.14 possibly_damaging(0.594) TCGA-AZ-4323-01 1 149901541 149901541 A G MTMR11 Missense_Mutation p.Y639H 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-4323-01 1 150997991 150997991 G A PRUNE Missense_Mutation p.G174E 0.11 deleterious(0) possibly_damaging(0.903) TCGA-AZ-4323-01 1 152281467 152281467 G A FLG Silent p.A1965A 0.07 TCGA-AZ-4323-01 1 155186778 155186778 C T MTX1 3'Flank 0.18 TCGA-AZ-4323-01 1 161518807 161518807 G A FCGR3A Missense_Mutation p.R55W 0.07 deleterious(0.01) benign(0.009) TCGA-AZ-4323-01 1 226058782 226058782 C T TMEM63A Missense_Mutation p.R122H 0.10 tolerated(0.18) possibly_damaging(0.614) TCGA-AZ-4323-01 1 228288927 228288927 A G C1orf35 Missense_Mutation p.S233P 0.09 deleterious(0.04) benign(0.276) TCGA-AZ-4323-01 1 248512310 248512310 C T OR14C36 Silent p.T78T 0.06 TCGA-AZ-4323-01 1 52237797 52237797 C T OSBPL9 Missense_Mutation p.R342C 0.11 tolerated(0.09) benign(0.001) TCGA-AZ-4323-01 20 31024758 31024758 C T ASXL1 Nonsense_Mutation p.R1415* 0.33 TCGA-AZ-4323-01 20 40877408 40877408 G A PTPRT Missense_Mutation p.T744I 0.08 tolerated(0.15) possibly_damaging(0.69) TCGA-AZ-4323-01 2 10105498 10105498 C T GRHL1 Silent p.N366N 0.11 TCGA-AZ-4323-01 2 166187937 166187937 A G SCN2A Silent p.K749K 0.14 TCGA-AZ-4323-01 3 129284314 129284314 T G PLXND1 Missense_Mutation p.K1464Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-AZ-4323-01 3 51743434 51743434 T G GRM2 Missense_Mutation p.S145R 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4323-01 3 52283654 52283654 C T PPM1M Intron 0.08 TCGA-AZ-4323-01 3 65415701 65415701 C T MAGI1 Missense_Mutation p.R554Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-AZ-4323-01 4 42065135 42065135 A G SLC30A9 Silent p.L343L 0.10 TCGA-AZ-4323-01 5 101816103 101816103 C T SLCO6A1 Missense_Mutation p.D132N 0.11 tolerated(0.34) benign(0.003) TCGA-AZ-4323-01 5 108680500 108680500 C G PJA2 Missense_Mutation p.E595D 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4323-01 5 11397248 11397248 C T CTNND2 Silent p.P169P 0.20 TCGA-AZ-4323-01 5 140744945 140744945 A G PCDHGA5 Missense_Mutation p.T350A 0.08 deleterious_low_confidence(0.01) benign(0.32) TCGA-AZ-4323-01 5 145551521 145551521 T A LARS Missense_Mutation p.K82N 0.06 deleterious(0.03) benign(0.066) TCGA-AZ-4323-01 5 150042540 150042540 G A MYOZ3 Missense_Mutation p.A13T 0.14 tolerated(0.29) benign(0.015) TCGA-AZ-4323-01 6 132891738 132891738 C T TAAR6 Missense_Mutation p.T93M 0.10 deleterious(0) benign(0.298) TCGA-AZ-4323-01 6 152638024 152638024 T G SYNE1 Missense_Mutation p.N5557T 0.10 benign(0.008) TCGA-AZ-4323-01 6 166580284 166580284 G T T Silent p.S89S 0.13 TCGA-AZ-4323-01 6 52138543 52138543 C T MCM3 Missense_Mutation p.D561N 0.19 tolerated(0.14) benign(0.066) TCGA-AZ-4323-01 6 70964678 70964678 C T COL9A1 Missense_Mutation p.M551I 0.13 benign(0.391) TCGA-AZ-4323-01 7 150642462 150642462 C T KCNH2 Silent p.P1157P 0.20 TCGA-AZ-4323-01 7 2951811 2951811 C T CARD11 Missense_Mutation p.A1047T 0.18 tolerated(0.2) benign(0.126) TCGA-AZ-4323-01 8 86572756 86572756 G A REXO1L1P 3'UTR 0.16 TCGA-AZ-4323-01 8 86572813 86572813 G C REXO1L1P 3'UTR 0.18 TCGA-AZ-4323-01 9 134505699 134505699 G A RAPGEF1 Missense_Mutation p.L223F 0.22 deleterious(0.04) possibly_damaging(0.844) TCGA-AZ-4323-01 9 139345802 139345802 G A SEC16A Missense_Mutation p.S2073L 0.09 tolerated(0.07) benign(0.021) TCGA-AZ-4323-01 9 14797618 14797618 A C FREM1 Missense_Mutation p.H1239Q 0.19 deleterious(0) probably_damaging(1) TCGA-AZ-4323-01 9 27948945 27948945 G A LINGO2 Silent p.N575N 0.18 TCGA-AZ-4323-01 X 101818868 101818868 A G NXF4 RNA 0.29 TCGA-AZ-4323-01 X 101818876 101818876 T G NXF4 RNA 0.28 TCGA-AZ-4323-01 X 107412826 107412826 C A COL4A6 Missense_Mutation p.G1198V 0.35 probably_damaging(1) TCGA-AZ-4323-01 X 129150139 129150139 C T BCORL1 Nonsense_Mutation p.Q1131* 0.60 TCGA-AZ-4323-01 X 129343664 129343664 G A ZNF280C Missense_Mutation p.R669W 0.09 deleterious(0) probably_damaging(0.955) TCGA-AZ-4323-01 X 135328415 135328415 C G MAP7D3 Silent p.S52S 0.08 TCGA-AZ-4323-01 X 135431085 135431085 T G GPR112 Silent p.T1740T 0.42 TCGA-AZ-4323-01 X 150840985 150840985 C A PASD1 Missense_Mutation p.P590T 0.11 tolerated(0.19) possibly_damaging(0.803) TCGA-AZ-4323-01 X 20159809 20159809 G C EIF1AX 5'UTR 0.13 TCGA-AZ-4323-01 X 23956734 23956734 C T CXorf58 Missense_Mutation p.R286C 0.22 deleterious(0) probably_damaging(0.998) TCGA-AZ-4323-01 X 39923059 39923059 G A BCOR Nonsense_Mutation p.R1217* 0.36 TCGA-AZ-4323-01 X 96194274 96194274 T G DIAPH2 Missense_Mutation p.N406K 0.06 tolerated(0.09) unknown(0) TCGA-AZ-4614-01 10 127760083 127760083 A C ADAM12 Missense_Mutation p.V432G 0.36 deleterious(0) probably_damaging(0.989) TCGA-AZ-4614-01 10 32740822 32740822 C A CCDC7 Silent p.I84I 0.40 TCGA-AZ-4614-01 10 5925026 5925026 G A ANKRD16 Silent p.V264V 0.33 TCGA-AZ-4614-01 10 86132046 86132046 A G CCSER2 Missense_Mutation p.D413G 0.10 deleterious(0) probably_damaging(0.999) TCGA-AZ-4614-01 11 111487071 111487071 C T SIK2 Silent p.I80I 0.78 TCGA-AZ-4614-01 11 1156628 1156628 C T MUC5AC Silent p.N215N 0.41 TCGA-AZ-4614-01 11 1264323 1264324 - A MUC5B Frame_Shift_Ins p.T2072Nfs*52 0.24 TCGA-AZ-4614-01 11 14889207 14889207 A G PDE3B Silent p.L1014L 0.33 TCGA-AZ-4614-01 11 4471320 4471320 T G OR52K2 Missense_Mutation p.L251V 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4614-01 11 46784288 46784288 G A CKAP5 Missense_Mutation p.R1306C 0.40 deleterious(0) possibly_damaging(0.846) TCGA-AZ-4614-01 11 55432790 55432790 A G OR4C6 Missense_Mutation p.S50G 0.06 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-AZ-4614-01 11 56019706 56019706 T G OR5T3 Missense_Mutation p.Y11D 0.36 deleterious_low_confidence(0) benign(0.008) TCGA-AZ-4614-01 11 56143663 56143663 T G OR8U1 Silent p.T188T 0.40 TCGA-AZ-4614-01 11 611778 611778 G A PHRF1 3'UTR 0.42 TCGA-AZ-4614-01 11 61960935 61960935 C A SCGB1D1 3'UTR 0.47 TCGA-AZ-4614-01 11 62376546 62376546 C A EML3 Missense_Mutation p.V273L 0.35 tolerated(0.1) benign(0.075) TCGA-AZ-4614-01 11 64361242 64361242 C T SLC22A12 Missense_Mutation p.S266L 0.07 deleterious(0.03) possibly_damaging(0.877) TCGA-AZ-4614-01 11 66189954 66189954 C T NPAS4 Silent p.Y120Y 0.40 TCGA-AZ-4614-01 11 67353964 67353964 C A GSTP1 Silent p.R183R 0.09 TCGA-AZ-4614-01 11 70332900 70332900 C T SHANK2 Silent p.P1167P 0.47 TCGA-AZ-4614-01 11 83183813 83183813 T G DLG2 Missense_Mutation p.Q767H 0.54 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4614-01 11 84027996 84027996 C T DLG2 Intron 0.43 TCGA-AZ-4614-01 11 8959595 8959595 G A ASCL3 Silent p.H38H 0.42 TCGA-AZ-4614-01 12 108641970 108641970 C A WSCD2 Silent p.G516G 0.17 TCGA-AZ-4614-01 12 129180448 129180448 G A TMEM132C Missense_Mutation p.A577T 0.09 tolerated(0.1) possibly_damaging(0.88) TCGA-AZ-4614-01 12 132326327 132326327 C T MMP17 Missense_Mutation p.R289C 0.84 tolerated(0.08) probably_damaging(0.982) TCGA-AZ-4614-01 12 6421506 6421506 C T PLEKHG6 Silent p.L38L 0.90 TCGA-AZ-4614-01 12 64824009 64824009 G A XPOT Missense_Mutation p.D640N 0.83 tolerated(0.09) benign(0.043) TCGA-AZ-4614-01 12 6703624 6703624 C A CHD4 Splice_Site p.X771_splice 0.05 TCGA-AZ-4614-01 12 7469874 7469874 A C ACSM4 Silent p.G254G 0.89 TCGA-AZ-4614-01 12 9322094 9322094 A T PZP Missense_Mutation p.F645I 0.91 tolerated(1) benign(0) TCGA-AZ-4614-01 13 109550471 109550471 G T MYO16 Missense_Mutation p.Q567H 0.41 tolerated(0.79) benign(0.004) TCGA-AZ-4614-01 13 109550472 109550472 C T MYO16 Silent p.L568L 0.40 TCGA-AZ-4614-01 13 24520281 24520281 G A ANKRD20A19P RNA 0.50 TCGA-AZ-4614-01 13 36878685 36878685 G C SPG20 Missense_Mutation p.N606K 0.43 deleterious(0) benign(0.219) TCGA-AZ-4614-01 13 38143903 38143903 A G POSTN Silent p.T775T 0.35 TCGA-AZ-4614-01 13 46733059 46733059 G A LCP1 Missense_Mutation p.P44S 0.38 tolerated(0.43) benign(0.015) TCGA-AZ-4614-01 13 49794695 49794695 C G MLNR Missense_Mutation p.N74K 0.32 deleterious(0) possibly_damaging(0.828) TCGA-AZ-4614-01 13 58208537 58208537 G C PCDH17 Missense_Mutation p.E619D 0.44 tolerated(0.09) benign(0.253) TCGA-AZ-4614-01 13 67205529 67205529 A T PCDH9 Silent p.V1051V 0.52 TCGA-AZ-4614-01 13 79911377 79911377 C T RBM26 Missense_Mutation p.G838S 0.43 tolerated(0.06) possibly_damaging(0.545) TCGA-AZ-4614-01 14 103894738 103894738 A T MARK3 Silent p.I86I 0.38 TCGA-AZ-4614-01 14 58038681 58038681 A G SLC35F4 Silent p.N324N 0.45 TCGA-AZ-4614-01 14 74769619 74769619 C A ABCD4 5'UTR 0.51 TCGA-AZ-4614-01 14 75230555 75230555 G C YLPM1 Missense_Mutation p.Q121H 0.34 unknown(0) TCGA-AZ-4614-01 14 86088683 86088683 G T FLRT2 Silent p.L275L 0.40 TCGA-AZ-4614-01 14 94933485 94933485 G T SERPINA9 Missense_Mutation p.A306D 0.49 tolerated(0.08) benign(0.319) TCGA-AZ-4614-01 15 24922778 24922778 T G NPAP1 Missense_Mutation p.I588M 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-AZ-4614-01 15 25926197 25926197 A T ATP10A Missense_Mutation p.F1173I 0.37 tolerated(1) benign(0) TCGA-AZ-4614-01 15 43773122 43773122 C G TP53BP1 Missense_Mutation p.G157A 0.05 tolerated(0.19) benign(0.096) TCGA-AZ-4614-01 15 43910307 43910307 G C STRC Silent p.P104P 0.28 TCGA-AZ-4614-01 15 48063099 48063099 T G SEMA6D Missense_Mutation p.L780R 0.44 deleterious(0) probably_damaging(0.998) TCGA-AZ-4614-01 15 65849075 65849075 A C PTPLAD1 Splice_Site p.X69_splice 0.33 TCGA-AZ-4614-01 15 83222706 83222706 G T CPEB1 Missense_Mutation p.L299I 0.50 deleterious(0.03) probably_damaging(0.919) TCGA-AZ-4614-01 15 84553965 84553965 G T ADAMTSL3 Splice_Site p.X358_splice 0.44 TCGA-AZ-4614-01 15 89861810 89861810 G A POLG Silent p.R1148R 0.46 TCGA-AZ-4614-01 15 99482565 99482565 G A IGF1R Missense_Mutation p.E1145K 0.48 deleterious(0) probably_damaging(0.984) TCGA-AZ-4614-01 16 1270897 1270897 G A CACNA1H Missense_Mutation p.R2322Q 0.35 tolerated_low_confidence(0.41) benign(0.001) TCGA-AZ-4614-01 16 16200718 16200718 G A ABCC1 Silent p.A953A 0.35 TCGA-AZ-4614-01 16 2213915 2213915 C T TRAF7 5'UTR 0.31 TCGA-AZ-4614-01 16 3139420 3139420 C T ZSCAN10 Missense_Mutation p.R617H 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4614-01 16 50744680 50744680 C T NOD2 Silent p.G286G 0.33 TCGA-AZ-4614-01 16 58318533 58318533 G A PRSS54 Silent p.C205C 0.47 TCGA-AZ-4614-01 16 58577693 58577693 T C CNOT1 Missense_Mutation p.T1418A 0.53 tolerated(0.15) possibly_damaging(0.574) TCGA-AZ-4614-01 16 67858632 67858632 C T TSNAXIP1 Silent p.L156L 0.36 TCGA-AZ-4614-01 16 71317828 71317830 AAC - CMTR2 In_Frame_Del p.C665del 0.39 TCGA-AZ-4614-01 16 71985575 71985575 C T PKD1L3 RNA 0.39 TCGA-AZ-4614-01 16 80654764 80654764 G A CDYL2 Silent p.S301S 0.57 TCGA-AZ-4614-01 16 88503567 88503567 G C ZNF469 Missense_Mutation p.S3202T 0.73 benign(0.015) TCGA-AZ-4614-01 17 263334 263334 G T C17orf97 Missense_Mutation p.G234C 0.38 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-AZ-4614-01 17 35605000 35605000 G A ACACA Silent p.D748D 0.83 TCGA-AZ-4614-01 17 40824126 40824127 - C PLEKHH3 Frame_Shift_Ins p.H352Afs*122 0.44 TCGA-AZ-4614-01 17 5352175 5352175 G A DHX33 Missense_Mutation p.T590M 0.82 tolerated(0.22) benign(0) TCGA-AZ-4614-01 17 61788155 61788155 G T STRADA Silent p.I130I 0.78 TCGA-AZ-4614-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.73 deleterious(0) probably_damaging(0.995) TCGA-AZ-4614-01 18 18571134 18571134 T A ROCK1 Intron 0.40 TCGA-AZ-4614-01 18 34261472 34261472 C T FHOD3 Missense_Mutation p.R462W 0.46 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AZ-4614-01 18 48573563 48573564 - A SMAD4 Frame_Shift_Ins p.D52Rfs*2 0.37 TCGA-AZ-4614-01 18 65181977 65181977 A G DSEL 5'UTR 0.73 TCGA-AZ-4614-01 19 10673442 10673445 TCAG C KRI1 In_Frame_Del p.L121_K122delinsE 0.34 TCGA-AZ-4614-01 19 1080404 1080404 C T HMHA1 Intron 0.36 TCGA-AZ-4614-01 19 10818212 10818212 T C QTRT1 Silent p.H189H 0.44 TCGA-AZ-4614-01 19 14938387 14938387 A T OR7A5 Missense_Mutation p.S223T 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-AZ-4614-01 19 16620658 16620658 G C C19orf44 Missense_Mutation p.E500Q 0.37 tolerated(0.19) benign(0.406) TCGA-AZ-4614-01 19 50726596 50726596 C T MYH14 Missense_Mutation p.P228L 0.40 tolerated(0.48) benign(0.041) TCGA-AZ-4614-01 19 50862276 50862276 C T NAPSA Missense_Mutation p.V343I 0.39 tolerated(0.39) probably_damaging(0.999) TCGA-AZ-4614-01 19 51920810 51920810 G A SIGLEC10 Missense_Mutation p.S9L 0.41 tolerated_low_confidence(0.37) benign(0) TCGA-AZ-4614-01 19 5685017 5685017 C T HSD11B1L Nonsense_Mutation p.R31* 0.06 TCGA-AZ-4614-01 19 6496219 6496219 G A TUBB4A Silent p.A97A 0.46 TCGA-AZ-4614-01 19 7593777 7593777 A G MCOLN1 Missense_Mutation p.N352S 0.40 deleterious(0.04) possibly_damaging(0.649) TCGA-AZ-4614-01 19 8174261 8174261 C A FBN3 Missense_Mutation p.G1490W 0.45 deleterious(0) probably_damaging(1) TCGA-AZ-4614-01 1 109608848 109608848 C T TAF13 Missense_Mutation p.C38Y 0.38 tolerated(1) benign(0.021) TCGA-AZ-4614-01 1 113243323 113243323 G A MOV10 3'UTR 0.36 TCGA-AZ-4614-01 1 113456565 113456565 G A SLC16A1 Missense_Mutation p.P484L 0.37 tolerated(0.15) benign(0.009) TCGA-AZ-4614-01 1 118530782 118530782 G C SPAG17 Missense_Mutation p.P1856R 0.09 tolerated(0.18) benign(0.195) TCGA-AZ-4614-01 1 145538055 145538055 A G ITGA10 Missense_Mutation p.T912A 0.39 tolerated(0.76) benign(0.012) TCGA-AZ-4614-01 1 147380369 147380369 C T GJA8 Missense_Mutation p.A96V 0.41 tolerated(0.79) benign(0.187) TCGA-AZ-4614-01 1 152733998 152733998 C T KPRP 3'UTR 0.43 TCGA-AZ-4614-01 1 152883259 152883259 A G IVL Missense_Mutation p.Q329R 0.10 tolerated(0.08) benign(0.444) TCGA-AZ-4614-01 1 161017669 161017669 T C ARHGAP30 Missense_Mutation p.S1048G 0.41 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AZ-4614-01 1 16809907 16809907 A G CROCCP3 RNA 0.39 TCGA-AZ-4614-01 1 16817422 16817422 C T CROCCP3 Splice_Site 0.51 TCGA-AZ-4614-01 1 169695065 169695065 C A SELE Missense_Mutation p.K586N 0.50 deleterious(0) benign(0.001) TCGA-AZ-4614-01 1 175914140 175914140 A G RFWD2 3'UTR 0.37 TCGA-AZ-4614-01 1 176769216 176769216 G A PAPPA2 Missense_Mutation p.R1717Q 0.32 tolerated(0.36) benign(0.012) TCGA-AZ-4614-01 1 186037002 186037002 A G HMCN1 Missense_Mutation p.N2581S 0.37 benign(0.001) TCGA-AZ-4614-01 1 197112022 197112022 G T ASPM Missense_Mutation p.L454I 0.42 tolerated(0.51) benign(0.048) TCGA-AZ-4614-01 1 197886601 197886601 T A LHX9 5'UTR 0.05 TCGA-AZ-4614-01 1 217915431 217915431 C A SPATA17 Missense_Mutation p.S170R 0.44 deleterious(0) probably_damaging(0.95) TCGA-AZ-4614-01 1 236645887 236645887 C T EDARADD Missense_Mutation p.R196C 0.50 deleterious(0.01) probably_damaging(0.943) TCGA-AZ-4614-01 1 241672040 241672040 T A FH Missense_Mutation p.I201L 0.31 tolerated(0.78) benign(0.003) TCGA-AZ-4614-01 1 248344093 248344093 C T OR2M2 Missense_Mutation p.T269M 0.37 tolerated(0.08) benign(0.223) TCGA-AZ-4614-01 1 248512124 248512124 T C OR14C36 Silent p.S16S 0.11 TCGA-AZ-4614-01 1 40961788 40961788 T G ZFP69 3'UTR 0.48 TCGA-AZ-4614-01 1 45079961 45079961 G T RNF220 Silent p.L250L 0.39 TCGA-AZ-4614-01 1 48864975 48864976 - A SPATA6 Intron 0.15 TCGA-AZ-4614-01 1 53580353 53580353 G A SLC1A7 Intron 0.41 TCGA-AZ-4614-01 1 57347129 57347129 T C C8A Missense_Mutation p.L159P 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-4614-01 1 75683559 75683559 C T SLC44A5 Missense_Mutation p.R539H 0.27 tolerated(0.05) benign(0.021) TCGA-AZ-4614-01 1 82409284 82409284 T G LPHN2 Missense_Mutation p.I343M 0.29 tolerated(0.39) benign(0.034) TCGA-AZ-4614-01 1 9324342 9324342 C T H6PD Missense_Mutation p.A597V 0.09 tolerated(0.2) benign(0.021) TCGA-AZ-4614-01 20 30194205 30194205 A G ID1 3'UTR 0.38 TCGA-AZ-4614-01 20 44669261 44669261 C G SLC12A5 Intron 0.15 TCGA-AZ-4614-01 20 44669269 44669269 C G SLC12A5 Intron 0.15 TCGA-AZ-4614-01 20 44757798 44757798 C T CD40 3'UTR 0.21 TCGA-AZ-4614-01 21 15535767 15535767 C A LIPI Missense_Mutation p.D348Y 0.47 deleterious(0) probably_damaging(0.997) TCGA-AZ-4614-01 21 41117423 41117423 G T IGSF5 5'UTR 0.31 TCGA-AZ-4614-01 22 19006343 19006343 A C DGCR9 RNA 0.13 TCGA-AZ-4614-01 22 21327795 21327795 C A AIFM3 Missense_Mutation p.D77E 0.62 tolerated(0.18) benign(0.245) TCGA-AZ-4614-01 22 24579581 24579581 C G SUSD2 Missense_Mutation p.H136D 0.77 tolerated(0.21) benign(0.045) TCGA-AZ-4614-01 22 36164359 36164359 G A RBFOX2 Missense_Mutation p.A234V 0.73 possibly_damaging(0.841) TCGA-AZ-4614-01 22 36690162 36690162 C T MYH9 Silent p.L1271L 0.35 TCGA-AZ-4614-01 22 44168784 44168784 G A EFCAB6 Silent p.D113D 0.71 TCGA-AZ-4614-01 22 50480054 50480054 C T TTLL8 Missense_Mutation p.V312I 0.10 tolerated(0.42) benign(0.044) TCGA-AZ-4614-01 22 51117516 51117516 G A SHANK3 Missense_Mutation p.A224T 0.19 possibly_damaging(0.658) TCGA-AZ-4614-01 2 108604724 108604724 G A SLC5A7 Missense_Mutation p.R38H 0.04 tolerated(0.13) benign(0.006) TCGA-AZ-4614-01 2 128900676 128900676 C A UGGT1 Missense_Mutation p.N576K 0.33 tolerated(0.27) possibly_damaging(0.869) TCGA-AZ-4614-01 2 131522441 131522441 G A AMER3 3'UTR 0.08 TCGA-AZ-4614-01 2 133541685 133541685 G A NCKAP5 Missense_Mutation p.A900V 0.12 tolerated(0.16) benign(0.03) TCGA-AZ-4614-01 2 138420989 138420989 A G THSD7B Missense_Mutation p.I1502V 0.42 tolerated(1) unknown(0) TCGA-AZ-4614-01 2 166848204 166848204 G A SCN1A Missense_Mutation p.R1861W 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-4614-01 2 168102986 168102986 T G XIRP2 Missense_Mutation p.L1695R 0.45 probably_damaging(0.998) TCGA-AZ-4614-01 2 18112645 18112645 C T KCNS3 Missense_Mutation p.R124C 0.23 deleterious(0.04) benign(0.436) TCGA-AZ-4614-01 2 189876381 189876381 G A COL3A1 Missense_Mutation p.V1428I 0.39 unknown(0) TCGA-AZ-4614-01 2 223169081 223169081 G C CCDC140 Missense_Mutation p.E154Q 0.14 tolerated_low_confidence(0.14) unknown(0) TCGA-AZ-4614-01 2 224866399 224866399 G A SERPINE2 Silent p.T85T 0.54 TCGA-AZ-4614-01 2 237489107 237489107 C T ACKR3 5'UTR 0.43 TCGA-AZ-4614-01 2 23865594 23865594 G A KLHL29 Missense_Mutation p.A272T 0.39 tolerated_low_confidence(0.09) benign(0.011) TCGA-AZ-4614-01 2 239040062 239040062 G A ESPNL Missense_Mutation p.A903T 0.31 tolerated(0.07) possibly_damaging(0.667) TCGA-AZ-4614-01 2 26414366 26414366 G A HADHA Missense_Mutation p.P711L 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4614-01 2 27164854 27164854 G A DPYSL5 Missense_Mutation p.V376I 0.43 tolerated(0.16) benign(0.004) TCGA-AZ-4614-01 2 27462291 27462291 C T CAD Silent p.T1782T 0.39 TCGA-AZ-4614-01 2 29462643 29462643 C T ALK Missense_Mutation p.R753Q 0.37 deleterious(0.02) probably_damaging(0.976) TCGA-AZ-4614-01 2 50850468 50850468 G A NRXN1 Missense_Mutation p.T406I 0.35 tolerated(0.05) probably_damaging(0.968) TCGA-AZ-4614-01 2 55490777 55490777 T - MTIF2 Frame_Shift_Del p.K73Rfs*19 0.29 TCGA-AZ-4614-01 2 5836492 5836492 G A SOX11 3'UTR 0.46 TCGA-AZ-4614-01 2 73646337 73646337 G A ALMS1 Silent p.T179T 0.29 TCGA-AZ-4614-01 2 98340870 98340870 G A ZAP70 Missense_Mutation p.R124H 0.41 deleterious(0.02) probably_damaging(0.919) TCGA-AZ-4614-01 3 126135291 126135291 G A CCDC37 Missense_Mutation p.E120K 0.14 tolerated(0.28) benign(0.004) TCGA-AZ-4614-01 3 126751619 126751619 G A PLXNA1 Silent p.Q1845Q 0.37 TCGA-AZ-4614-01 3 127779016 127779016 G C SEC61A1 Missense_Mutation p.E142Q 0.29 tolerated(0.34) benign(0.004) TCGA-AZ-4614-01 3 130884328 130884328 C T NEK11 Missense_Mutation p.R381W 0.25 deleterious(0.02) possibly_damaging(0.701) TCGA-AZ-4614-01 3 1427411 1427411 C T CNTN6 Silent p.S878S 0.62 TCGA-AZ-4614-01 3 157031543 157031543 C T VEPH1 Missense_Mutation p.S626N 0.31 tolerated(0.15) benign(0.033) TCGA-AZ-4614-01 3 167006742 167006742 A C ZBBX Missense_Mutation p.L637V 0.17 tolerated(0.27) benign(0.036) TCGA-AZ-4614-01 3 184042675 184042675 C T EIF4G1 Nonsense_Mutation p.R884* 0.27 TCGA-AZ-4614-01 3 25685228 25685228 A C TOP2B Silent p.V91V 0.75 TCGA-AZ-4614-01 3 27761671 27761671 T A EOMES Missense_Mutation p.N343Y 0.72 deleterious(0) probably_damaging(0.987) TCGA-AZ-4614-01 3 37053528 37053528 G T MLH1 Missense_Mutation p.R205S 0.75 deleterious(0.03) benign(0.265) TCGA-AZ-4614-01 3 38278358 38278358 G A OXSR1 Missense_Mutation p.R327H 0.65 tolerated(0.29) benign(0.008) TCGA-AZ-4614-01 3 52474474 52474474 G A SEMA3G Silent p.N354N 0.72 TCGA-AZ-4614-01 3 88104875 88104875 C T CGGBP1 Silent p.R84R 0.76 TCGA-AZ-4614-01 4 100201328 100201328 G A ADH1A Missense_Mutation p.R313C 0.23 deleterious(0.04) possibly_damaging(0.807) TCGA-AZ-4614-01 4 1016221 1016221 G A FGFRL1 Missense_Mutation p.G104S 0.70 deleterious(0) probably_damaging(1) TCGA-AZ-4614-01 4 123249359 123249359 C A KIAA1109 Missense_Mutation p.P3699H 0.28 probably_damaging(0.999) TCGA-AZ-4614-01 4 126371170 126371170 C T FAT4 Missense_Mutation p.T3000M 0.56 probably_damaging(0.999) TCGA-AZ-4614-01 4 126412593 126412593 A G FAT4 Silent p.Q4872Q 0.29 TCGA-AZ-4614-01 4 142053678 142053678 C T RNF150 Silent p.S95S 0.13 TCGA-AZ-4614-01 4 156273869 156273869 T - MAP9 Frame_Shift_Del p.K567Rfs*13 0.16 TCGA-AZ-4614-01 4 15628495 15628495 C G FBXL5 Splice_Site p.X375_splice 0.51 TCGA-AZ-4614-01 4 175899159 175899159 C A ADAM29 3'UTR 0.11 TCGA-AZ-4614-01 4 183714346 183714346 G A TENM3 Missense_Mutation p.R2174H 0.72 tolerated(0.06) possibly_damaging(0.84) TCGA-AZ-4614-01 4 56348968 56348968 C T CLOCK 5'UTR 0.35 TCGA-AZ-4614-01 4 70079884 70079884 C A UGT2B11 Missense_Mutation p.G186V 0.61 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4614-01 4 83839177 83839177 T G THAP9 Silent p.T604T 0.23 TCGA-AZ-4614-01 4 84200139 84200139 T C COQ2 Missense_Mutation p.T178A 0.64 deleterious(0.03) possibly_damaging(0.525) TCGA-AZ-4614-01 5 118506284 118506284 G T DMXL1 Missense_Mutation p.G1933V 0.74 tolerated(0.08) benign(0.082) TCGA-AZ-4614-01 5 140203521 140203521 C T PCDHA5 Missense_Mutation p.R721W 0.69 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-AZ-4614-01 5 140481628 140481628 C A PCDHB3 Missense_Mutation p.S465R 0.68 deleterious_low_confidence(0.01) benign(0.056) TCGA-AZ-4614-01 5 140572231 140572231 A G PCDHB10 Missense_Mutation p.T36A 0.70 tolerated_low_confidence(1) benign(0.002) TCGA-AZ-4614-01 5 31983762 31983762 G T PDZD2 Silent p.R326R 0.04 TCGA-AZ-4614-01 5 45695843 45695843 T C HCN1 Missense_Mutation p.K118R 0.43 tolerated(0.08) probably_damaging(0.973) TCGA-AZ-4614-01 5 45695904 45695904 A C HCN1 Missense_Mutation p.F98V 0.27 deleterious(0.03) probably_damaging(0.966) TCGA-AZ-4614-01 5 60839891 60839891 C T ZSWIM6 Missense_Mutation p.S1132L 0.73 tolerated(0.15) benign(0.105) TCGA-AZ-4614-01 5 90136644 90136644 T G GPR98 Missense_Mutation p.S5621A 0.66 benign(0.277) TCGA-AZ-4614-01 6 10876187 10876187 G A GCM2 Silent p.S173S 0.43 TCGA-AZ-4614-01 6 117678981 117678981 T C ROS1 Silent p.V1280V 0.58 TCGA-AZ-4614-01 6 123318972 123318972 G A CLVS2 Missense_Mutation p.R17H 0.35 deleterious(0) possibly_damaging(0.849) TCGA-AZ-4614-01 6 132874291 132874291 G A TAAR8 Missense_Mutation p.V154M 0.49 tolerated(0.05) benign(0.305) TCGA-AZ-4614-01 6 137322825 137322825 C A IL20RA Missense_Mutation p.G511V 0.09 tolerated(0.16) benign(0.045) TCGA-AZ-4614-01 6 143075010 143075010 C T HIVEP2 Missense_Mutation p.G2192D 0.48 tolerated(0.37) probably_damaging(1) TCGA-AZ-4614-01 6 151670448 151670448 C T AKAP12 Missense_Mutation p.R308C 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4614-01 6 25670236 25670236 C T SCGN Nonsense_Mutation p.R135* 0.30 TCGA-AZ-4614-01 6 28547194 28547194 G C SCAND3 Silent p.V141V 0.40 TCGA-AZ-4614-01 6 32064043 32064043 G A TNXB Silent p.P529P 0.36 TCGA-AZ-4614-01 6 33263192 33263192 C T RGL2 Missense_Mutation p.R343Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-AZ-4614-01 6 33283513 33283513 G C ZBTB22 Missense_Mutation p.A394G 0.40 deleterious(0.05) benign(0.078) TCGA-AZ-4614-01 6 36196827 36196827 G A BRPF3 Missense_Mutation p.R1143H 0.05 tolerated(0.05) probably_damaging(0.999) TCGA-AZ-4614-01 6 52053938 52053938 G A IL17A Missense_Mutation p.V106M 0.49 tolerated(0.23) benign(0.243) TCGA-AZ-4614-01 6 53761346 53761346 T C LRRC1 Missense_Mutation p.L166P 0.50 deleterious(0) probably_damaging(0.912) TCGA-AZ-4614-01 6 57244750 57244750 C T PRIM2 Missense_Mutation p.P171S 0.23 tolerated(0.39) benign(0.005) TCGA-AZ-4614-01 6 73100303 73100303 C T RIMS1 Missense_Mutation p.S1457L 0.46 deleterious(0) benign(0.158) TCGA-AZ-4614-01 6 88853687 88853687 G T CNR1 Missense_Mutation p.A436E 0.39 tolerated(0.37) benign(0.058) TCGA-AZ-4614-01 6 96658004 96658004 T A FUT9 3'UTR 0.36 TCGA-AZ-4614-01 7 123509021 123509021 A G HYAL4 Missense_Mutation p.N232D 0.46 tolerated(0.08) benign(0.094) TCGA-AZ-4614-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-AZ-4614-01 7 142561757 142561757 C T EPHB6 Missense_Mutation p.R67C 0.42 deleterious(0.04) probably_damaging(0.987) TCGA-AZ-4614-01 7 14758255 14758255 A G DGKB Silent p.N126N 0.11 TCGA-AZ-4614-01 7 149503849 149503849 C T SSPO RNA 0.08 TCGA-AZ-4614-01 7 151097200 151097200 C T WDR86 Silent p.T97T 0.42 TCGA-AZ-4614-01 7 43591912 43591912 G A HECW1 Missense_Mutation p.R1496Q 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-4614-01 7 4917441 4917441 G A RADIL Silent p.Y110Y 0.44 TCGA-AZ-4614-01 7 64439588 64439588 G A ZNF117 Missense_Mutation p.L121F 0.36 tolerated(0.34) benign(0.042) TCGA-AZ-4614-01 7 64838799 64838799 G C ZNF92 5'UTR 0.11 TCGA-AZ-4614-01 7 72430389 72430389 C A TRIM74 3'UTR 0.29 TCGA-AZ-4614-01 7 94054513 94054513 G A COL1A2 Missense_Mutation p.A920T 0.40 unknown(0) TCGA-AZ-4614-01 8 116632279 116632279 G A TRPS1 Missense_Mutation p.R16W 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-4614-01 8 12885610 12885610 C G KIAA1456 3'UTR 0.69 TCGA-AZ-4614-01 8 144657811 144657811 G A NAPRT1 Missense_Mutation p.S390F 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-AZ-4614-01 8 20066994 20066994 G C ATP6V1B2 Missense_Mutation p.K81N 0.19 tolerated(0.17) benign(0.003) TCGA-AZ-4614-01 8 38677700 38677700 C T TACC1 Missense_Mutation p.S313L 0.15 tolerated(0.09) benign(0.006) TCGA-AZ-4614-01 8 43212021 43212021 C A POTEA RNA 0.06 TCGA-AZ-4614-01 8 55014383 55014383 T C LYPLA1 Translation_Start_Site p.M1? 0.68 deleterious(0) benign(0.213) TCGA-AZ-4614-01 8 69351667 69351667 A C C8orf34 Intron 0.50 TCGA-AZ-4614-01 8 77618069 77618069 A T ZFHX4 Missense_Mutation p.E582D 0.51 benign(0) TCGA-AZ-4614-01 8 77766707 77766707 T G ZFHX4 Missense_Mutation p.L2517R 0.38 probably_damaging(0.996) TCGA-AZ-4614-01 8 97157007 97157007 C G GDF6 Missense_Mutation p.E384D 0.10 tolerated(0.1) possibly_damaging(0.497) TCGA-AZ-4614-01 9 1056222 1056222 G A DMRT2 Missense_Mutation p.R212H 0.14 deleterious(0) probably_damaging(0.988) TCGA-AZ-4614-01 9 113170208 113170208 A T SVEP1 Missense_Mutation p.S2558T 0.45 benign(0.065) TCGA-AZ-4614-01 9 117086002 117086002 G A ORM1 Silent p.S58S 0.35 TCGA-AZ-4614-01 9 119028220 119028220 A T PAPPA Silent p.T939T 0.40 TCGA-AZ-4614-01 9 119094665 119094665 G A PAPPA Silent p.T1105T 0.40 TCGA-AZ-4614-01 9 121976298 121976298 G A BRINP1 Missense_Mutation p.P274L 0.50 deleterious(0) benign(0.098) TCGA-AZ-4614-01 9 126777416 126777416 G T LHX2 Missense_Mutation p.Q113H 0.09 deleterious(0.01) possibly_damaging(0.598) TCGA-AZ-4614-01 9 127651788 127651788 C A GOLGA1 Nonsense_Mutation p.E509* 0.37 TCGA-AZ-4614-01 9 127996036 127996036 G A RABEPK Missense_Mutation p.C299Y 0.46 deleterious(0) probably_damaging(0.99) TCGA-AZ-4614-01 9 129458212 129458212 C T LMX1B Silent p.Y338Y 0.30 TCGA-AZ-4614-01 9 135163666 135163666 A C SETX Missense_Mutation p.L2094R 0.22 deleterious(0) probably_damaging(0.996) TCGA-AZ-4614-01 9 136270456 136270459 GTGA - C9orf96 Frame_Shift_Del p.S653Tfs*67 0.21 TCGA-AZ-4614-01 9 138669198 138669198 C T KCNT1 Silent p.N788N 0.42 TCGA-AZ-4614-01 9 140356443 140356443 G A PNPLA7 Silent p.S1232S 0.49 TCGA-AZ-4614-01 9 43685150 43685150 A C CNTNAP3B 5'UTR 0.47 TCGA-AZ-4614-01 9 79323756 79323756 G A PRUNE2 Missense_Mutation p.A1145V 0.46 tolerated(1) benign(0) TCGA-AZ-4614-01 9 82337480 82337480 G T TLE4 Nonsense_Mutation p.E701* 0.45 TCGA-AZ-4614-01 9 86294843 86294843 C A UBQLN1 Missense_Mutation p.M186I 0.43 deleterious(0.01) possibly_damaging(0.577) TCGA-AZ-4614-01 9 86616377 86616377 G T RMI1 Missense_Mutation p.S159I 0.32 deleterious(0) benign(0.233) TCGA-AZ-4614-01 9 87570217 87570217 G A NTRK2 Missense_Mutation p.V653M 0.37 tolerated(0.35) benign(0.105) TCGA-AZ-4614-01 9 91606060 91606060 G A C9orf47 Silent p.A50A 0.08 TCGA-AZ-4614-01 X 105181574 105181574 G T NRK Missense_Mutation p.G1268C 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4614-01 X 106066575 106066575 C G TBC1D8B Missense_Mutation p.H236D 0.41 deleterious(0.03) benign(0.013) TCGA-AZ-4614-01 X 110002969 110002969 A G CHRDL1 Missense_Mutation p.L74P 0.08 tolerated(0.3) possibly_damaging(0.857) TCGA-AZ-4614-01 X 114058029 114058029 A G HTR2C Intron 0.21 TCGA-AZ-4614-01 X 114058095 114058095 G T HTR2C Intron 0.20 TCGA-AZ-4614-01 X 119391246 119391246 G A ZBTB33 3'UTR 0.57 TCGA-AZ-4614-01 X 120008766 120008766 C G CT47B1 Missense_Mutation p.E253D 0.60 tolerated(0.09) unknown(0) TCGA-AZ-4614-01 X 142718935 142718935 T A SLITRK4 5'UTR 0.31 TCGA-AZ-4614-01 X 148039884 148039884 G C AFF2 Missense_Mutation p.E862D 0.05 tolerated(0.76) benign(0.007) TCGA-AZ-4614-01 X 155007195 155007195 A C SPRY3 3'UTR 0.54 TCGA-AZ-4614-01 X 19377781 19377781 A G PDHA1 3'UTR 0.08 TCGA-AZ-4614-01 X 30327241 30327241 G C NR0B1 Silent p.L80L 0.78 TCGA-AZ-4614-01 X 32867910 32867910 A C DMD Missense_Mutation p.F41V 0.33 probably_damaging(0.93) TCGA-AZ-4614-01 X 47001652 47001652 G C NDUFB11 3'UTR 0.43 TCGA-AZ-4614-01 X 47001680 47001680 G A NDUFB11 3'UTR 0.41 TCGA-AZ-4614-01 X 47001736 47001736 G A NDUFB11 Nonsense_Mutation p.Q158* 0.44 TCGA-AZ-4614-01 X 47001737 47001737 G A NDUFB11 Silent p.I157I 0.44 TCGA-AZ-4614-01 X 54228443 54228443 T - WNK3 Frame_Shift_Del p.N1685Tfs*71 0.15 TCGA-AZ-4614-01 X 54263673 54263673 A C WNK3 Silent p.T1442T 0.03 TCGA-AZ-4614-01 X 57405161 57405161 C T FAAH2 Missense_Mutation p.R274C 0.56 deleterious(0) probably_damaging(1) TCGA-AZ-4614-01 X 57935706 57935706 G C ZXDA Missense_Mutation p.F383L 0.30 tolerated(0.06) probably_damaging(0.977) TCGA-AZ-4614-01 X 63411639 63411640 - AT AMER1 Frame_Shift_Ins p.E510Mfs*32 0.43 TCGA-AZ-4614-01 X 65241867 65241867 A T VSIG4 3'UTR 0.35 TCGA-AZ-4614-01 X 82763266 82763266 C T POU3F4 5'Flank 0.32 TCGA-AZ-4614-01 X 99662678 99662678 G T PCDH19 Nonsense_Mutation p.Y306* 0.36 TCGA-AZ-4615-01 10 104660576 104660576 C T AS3MT 3'UTR 0.36 TCGA-AZ-4615-01 10 105202125 105202125 G T PDCD11 Silent p.L1621L 0.46 TCGA-AZ-4615-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.74 TCGA-AZ-4615-01 10 112840510 112840511 - T ADRA2A 3'UTR 0.29 TCGA-AZ-4615-01 10 117884972 117884972 G - GFRA1 Frame_Shift_Del p.P177Rfs*68 0.15 TCGA-AZ-4615-01 10 118893630 118893630 C T VAX1 Silent p.S298S 0.30 TCGA-AZ-4615-01 10 120790591 120790591 T - NANOS1 3'UTR 0.27 TCGA-AZ-4615-01 10 120801804 120801804 A G EIF3A Silent p.D1076D 0.36 TCGA-AZ-4615-01 10 124066813 124066813 T - BTBD16 Frame_Shift_Del p.F302Lfs*15 0.22 TCGA-AZ-4615-01 10 124175393 124175393 T C PLEKHA1 Missense_Mutation p.C163R 0.29 tolerated(0.53) benign(0.209) TCGA-AZ-4615-01 10 124189173 124189173 G A PLEKHA1 Missense_Mutation p.A312T 0.27 tolerated(0.39) benign(0.001) TCGA-AZ-4615-01 10 124742950 124742950 T G PSTK Missense_Mutation p.L224R 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 10 126086581 126086581 G A OAT Missense_Mutation p.P417L 0.44 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 10 15648371 15648371 A G ITGA8 Silent p.N605N 0.29 TCGA-AZ-4615-01 10 28229646 28229646 C A ARMC4 Missense_Mutation p.G611V 0.32 deleterious(0) probably_damaging(0.997) TCGA-AZ-4615-01 10 30316501 30316503 CTG - KIAA1462 In_Frame_Del p.S859del 0.42 TCGA-AZ-4615-01 10 31815987 31815987 A - ZEB1 Frame_Shift_Del p.K1059Nfs*20 0.34 TCGA-AZ-4615-01 10 3185598 3185598 C A PITRM1 Silent p.T877T 0.30 TCGA-AZ-4615-01 10 409147 409147 C T DIP2C Missense_Mutation p.R861H 0.48 deleterious(0) probably_damaging(0.991) TCGA-AZ-4615-01 10 46248059 46248059 C - FAM21C Frame_Shift_Del p.K345Sfs*2 0.23 TCGA-AZ-4615-01 10 46248649 46248649 T - FAM21C Frame_Shift_Del p.S382Pfs*32 0.43 TCGA-AZ-4615-01 10 46254815 46254815 A - FAM21C Frame_Shift_Del p.G536Afs*21 0.22 TCGA-AZ-4615-01 10 49933985 49933985 G A WDFY4 Silent p.E217E 0.40 TCGA-AZ-4615-01 10 5138713 5138713 C T AKR1C3 Nonsense_Mutation p.R66* 0.38 TCGA-AZ-4615-01 10 51859790 51859790 A - FAM21A Frame_Shift_Del p.G536Afs*21 0.12 TCGA-AZ-4615-01 10 52005194 52005194 A - ASAH2 Frame_Shift_Del p.S50Qfs*40 0.41 TCGA-AZ-4615-01 10 5435634 5435634 G T TUBAL3 Missense_Mutation p.A396D 0.47 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-AZ-4615-01 10 55616953 55616953 T - PCDH15 Frame_Shift_Del p.K1263Rfs*2 0.26 TCGA-AZ-4615-01 10 56287576 56287576 C T PCDH15 Silent p.R51R 0.25 TCGA-AZ-4615-01 10 5789083 5789084 CT - FAM208B Frame_Shift_Del p.S1234Ffs*14 0.19 TCGA-AZ-4615-01 10 61718601 61718602 - A C10orf40 5'UTR 0.29 TCGA-AZ-4615-01 10 64575770 64575770 A G EGR2 Missense_Mutation p.V7A 0.42 tolerated(0.71) benign(0) TCGA-AZ-4615-01 10 64913506 64913506 A G NRBF2 Missense_Mutation p.Q131R 0.37 tolerated(0.56) benign(0.019) TCGA-AZ-4615-01 10 70525749 70525749 A - CCAR1 Frame_Shift_Del p.S739Vfs*11 0.29 TCGA-AZ-4615-01 10 75673125 75673125 A G PLAU Missense_Mutation p.H149R 0.31 tolerated(0.23) benign(0.047) TCGA-AZ-4615-01 10 82045296 82045296 C T MAT1A Silent p.K47K 0.28 TCGA-AZ-4615-01 10 84118494 84118494 G T NRG3 Splice_Site p.X275_splice 0.30 TCGA-AZ-4615-01 10 96163109 96163109 G A TBC1D12 Missense_Mutation p.A247T 0.26 tolerated_low_confidence(0.08) benign(0.131) TCGA-AZ-4615-01 10 97779361 97779361 A G CC2D2B Intron 0.34 TCGA-AZ-4615-01 10 99527275 99527276 - G SFRP5 Frame_Shift_Ins p.H317Pfs*55 0.12 TCGA-AZ-4615-01 11 100933176 100933176 A G PGR Splice_Site p.X738_splice 0.32 TCGA-AZ-4615-01 11 102480718 102480718 T C MMP20 Silent p.L189L 0.41 TCGA-AZ-4615-01 11 102736544 102736544 A - MMP12 RNA 0.27 TCGA-AZ-4615-01 11 103116081 103116081 G T DYNC2H1 Missense_Mutation p.L3347F 0.31 probably_damaging(0.945) TCGA-AZ-4615-01 11 103907781 103907781 G T DDI1 Missense_Mutation p.K77N 0.20 tolerated(0.12) benign(0.039) TCGA-AZ-4615-01 11 103908404 103908404 G A DDI1 Missense_Mutation p.R285Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 11 109294891 109294891 G A C11orf87 Missense_Mutation p.A178T 0.27 tolerated_low_confidence(0.29) benign(0.004) TCGA-AZ-4615-01 11 111169106 111169106 A - COLCA1 5'UTR 0.30 TCGA-AZ-4615-01 11 111904183 111904183 A - DLAT Frame_Shift_Del p.V242Wfs*5 0.40 TCGA-AZ-4615-01 11 113200680 113200680 G A TTC12 Silent p.V161V 0.37 TCGA-AZ-4615-01 11 113934199 113934199 T C ZBTB16 Silent p.F59F 0.30 TCGA-AZ-4615-01 11 116707829 116707829 T C APOA1 Missense_Mutation p.S30G 0.10 deleterious(0) possibly_damaging(0.456) TCGA-AZ-4615-01 11 117031874 117031874 T - PAFAH1B2 Frame_Shift_Del p.S64Pfs*6 0.30 TCGA-AZ-4615-01 11 117062652 117062652 G A SIDT2 Silent p.R598R 0.27 TCGA-AZ-4615-01 11 117152949 117152949 C A RNF214 Missense_Mutation p.L559M 0.44 tolerated(0.08) probably_damaging(0.98) TCGA-AZ-4615-01 11 118392857 118392857 C T KMT2A Silent p.G3963G 0.36 TCGA-AZ-4615-01 11 118502646 118502646 G A PHLDB1 Missense_Mutation p.S706N 0.43 tolerated(0.24) benign(0.002) TCGA-AZ-4615-01 11 118850249 118850249 G A FOXR1 Missense_Mutation p.R161Q 0.42 tolerated(0.57) benign(0.011) TCGA-AZ-4615-01 11 119043687 119043687 C T NLRX1 Missense_Mutation p.A73V 0.20 tolerated(1) benign(0) TCGA-AZ-4615-01 11 119064495 119064495 T G CCDC153 Missense_Mutation p.E79D 0.43 tolerated(0.72) possibly_damaging(0.62) TCGA-AZ-4615-01 11 122944103 122944103 G A CLMP 3'UTR 0.39 TCGA-AZ-4615-01 11 123900355 123900355 C T OR10G8 Missense_Mutation p.A9V 0.29 tolerated(0.06) benign(0.001) TCGA-AZ-4615-01 11 124972065 124972065 G - TMEM218 Frame_Shift_Del p.L25Cfs*24 0.20 TCGA-AZ-4615-01 11 125482639 125482639 T C STT3A Silent p.N454N 0.28 TCGA-AZ-4615-01 11 125765477 125765477 G A PUS3 Missense_Mutation p.R196C 0.45 deleterious(0) benign(0.127) TCGA-AZ-4615-01 11 1281871 1281871 G A MUC5B Missense_Mutation p.R5661H 0.23 unknown(0) TCGA-AZ-4615-01 11 132205002 132205002 C T NTM Silent p.L344L 0.48 TCGA-AZ-4615-01 11 132527164 132527164 G T OPCML Missense_Mutation p.T73N 0.35 tolerated(0.38) possibly_damaging(0.862) TCGA-AZ-4615-01 11 134244962 134244962 C - GLB1L2 3'UTR 0.40 TCGA-AZ-4615-01 11 16424308 16424308 A - SOX6 Intron 0.27 TCGA-AZ-4615-01 11 1769021 1769021 G A RP11-295K3.1 Missense_Mutation p.T338M 0.33 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-AZ-4615-01 11 18232294 18232294 T - RP11-113D6.10 Intron 0.30 TCGA-AZ-4615-01 11 20676261 20676261 G A SLC6A5 Silent p.R747R 0.41 TCGA-AZ-4615-01 11 26587124 26587124 C G MUC15 Missense_Mutation p.E121D 0.28 tolerated_low_confidence(1) benign(0.043) TCGA-AZ-4615-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.28 TCGA-AZ-4615-01 11 31804942 31804942 G A ELP4 Missense_Mutation p.R382Q 0.31 tolerated(0.09) possibly_damaging(0.783) TCGA-AZ-4615-01 11 32956393 32956393 C T QSER1 Missense_Mutation p.H1068Y 0.29 tolerated(1) benign(0.003) TCGA-AZ-4615-01 11 33564895 33564895 A G KIAA1549L Missense_Mutation p.N299D 0.36 tolerated_low_confidence(0.05) benign(0.08) TCGA-AZ-4615-01 11 34118143 34118143 G A CAPRIN1 Missense_Mutation p.R608H 0.47 deleterious(0) possibly_damaging(0.87) TCGA-AZ-4615-01 11 3660987 3660987 A G ART5 Silent p.I224I 0.39 TCGA-AZ-4615-01 11 46693875 46693875 T C ATG13 Missense_Mutation p.L549P 0.44 deleterious(0) probably_damaging(0.993) TCGA-AZ-4615-01 11 46749582 46749582 G T F2 Silent p.L389L 0.27 TCGA-AZ-4615-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.29 TCGA-AZ-4615-01 11 47333339 47333339 T A MADD Silent p.I1405I 0.50 TCGA-AZ-4615-01 11 4976335 4976335 A - OR51A2 Frame_Shift_Del p.F203Lfs*8 0.26 TCGA-AZ-4615-01 11 5221704 5221704 G A OR51V1 Missense_Mutation p.A76V 0.10 deleterious(0) possibly_damaging(0.904) TCGA-AZ-4615-01 11 533834 533834 G A HRAS Silent p.T74T 0.37 TCGA-AZ-4615-01 11 55038032 55038032 A C TRIM48 3'UTR 0.31 TCGA-AZ-4615-01 11 5530135 5530135 C T UBQLN3 Silent p.R218R 0.31 TCGA-AZ-4615-01 11 5626673 5626675 AGA - TRIM6 In_Frame_Del p.K239del 0.30 TCGA-AZ-4615-01 11 57185284 57185284 C T SLC43A3 Missense_Mutation p.R203H 0.45 deleterious(0) probably_damaging(0.988) TCGA-AZ-4615-01 11 58190556 58190556 A - OR5B2 Frame_Shift_Del p.F60Sfs*44 0.28 TCGA-AZ-4615-01 11 62343588 62343588 G A TUT1 Missense_Mutation p.R573C 0.25 deleterious(0) probably_damaging(0.996) TCGA-AZ-4615-01 11 62533963 62533963 C T POLR2G Intron 0.35 TCGA-AZ-4615-01 11 62849140 62849140 T C SLC22A24 Splice_Site p.X429_splice 0.25 TCGA-AZ-4615-01 11 6417141 6417141 C T APBB1 Missense_Mutation p.V612M 0.30 deleterious(0) probably_damaging(0.996) TCGA-AZ-4615-01 11 64507197 64507197 C T RASGRP2 Missense_Mutation p.V203I 0.34 tolerated(0.45) benign(0.075) TCGA-AZ-4615-01 11 65113812 65113812 C T DPF2 Silent p.C333C 0.39 TCGA-AZ-4615-01 11 65715241 65715241 G A TSGA10IP RNA 0.41 TCGA-AZ-4615-01 11 66055345 66055346 - A YIF1A Frame_Shift_Ins p.A96Cfs*30 0.35 TCGA-AZ-4615-01 11 66619939 66619939 C T PC Missense_Mutation p.S599N 0.34 tolerated(0.62) benign(0.001) TCGA-AZ-4615-01 11 68206049 68206049 C T LRP5 Missense_Mutation p.A1416V 0.37 tolerated(0.29) benign(0.012) TCGA-AZ-4615-01 11 68540820 68540820 G A CPT1A Silent p.F551F 0.43 TCGA-AZ-4615-01 11 68580037 68580037 A G CPT1A Missense_Mutation p.I50T 0.51 deleterious(0) possibly_damaging(0.734) TCGA-AZ-4615-01 11 71819120 71819120 A G LRTOMT Silent p.A170A 0.22 TCGA-AZ-4615-01 11 72946455 72946455 C A P2RY2 3'UTR 0.38 TCGA-AZ-4615-01 11 74545780 74545780 C T RNF169 Missense_Mutation p.A301V 0.46 tolerated(0.53) benign(0.003) TCGA-AZ-4615-01 11 77728292 77728292 C T KCTD14 Missense_Mutation p.V39I 0.35 tolerated(0.24) possibly_damaging(0.712) TCGA-AZ-4615-01 11 78600891 78600891 G A TENM4 Silent p.C341C 0.21 TCGA-AZ-4615-01 11 82644778 82644778 G T C11orf82 Missense_Mutation p.D800Y 0.30 deleterious(0.04) possibly_damaging(0.789) TCGA-AZ-4615-01 11 86106300 86106300 T C CCDC81 Intron 0.29 TCGA-AZ-4615-01 11 88300840 88300840 T C GRM5 Missense_Mutation p.R671G 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 11 89017941 89017941 T C TYR Silent p.S395S 0.33 TCGA-AZ-4615-01 11 89531597 89531597 C A TRIM49 Missense_Mutation p.A354S 0.28 deleterious(0.01) probably_damaging(0.92) TCGA-AZ-4615-01 11 89885469 89885469 A - NAALAD2 Frame_Shift_Del p.N206Mfs*4 0.22 TCGA-AZ-4615-01 11 9200611 9200611 G A DENND5A Missense_Mutation p.R489C 0.40 tolerated(0.05) benign(0.004) TCGA-AZ-4615-01 11 92534138 92534138 C A FAT3 Silent p.I2653I 0.38 TCGA-AZ-4615-01 11 93431302 93431302 A G KIAA1731 Missense_Mutation p.H1075R 0.33 tolerated(0.26) benign(0.011) TCGA-AZ-4615-01 11 93494710 93494710 T - C11orf54 Frame_Shift_Del p.F220Lfs*18 0.29 TCGA-AZ-4615-01 11 9457816 9457816 A G IPO7 Splice_Site p.X725_splice 0.27 TCGA-AZ-4615-01 11 95561126 95561126 C T CEP57 Silent p.N354N 0.31 TCGA-AZ-4615-01 11 96124265 96124265 C T JRKL Missense_Mutation p.A151V 0.34 deleterious(0.04) benign(0.04) TCGA-AZ-4615-01 11 970195 970195 A - AP2A2 Frame_Shift_Del p.K57Sfs*24 0.65 TCGA-AZ-4615-01 11 9749689 9749689 T C SWAP70 Silent p.S244S 0.26 TCGA-AZ-4615-01 11 9817431 9817431 G T SBF2 Missense_Mutation p.S1506Y 0.36 deleterious(0) probably_damaging(0.952) TCGA-AZ-4615-01 11 9830425 9830425 A - SBF2 Intron 0.22 TCGA-AZ-4615-01 12 101988854 101988854 A G MYBPC1 Silent p.P2P 0.28 TCGA-AZ-4615-01 12 102151060 102151060 C T GNPTAB Missense_Mutation p.A1122T 0.32 deleterious(0.04) possibly_damaging(0.484) TCGA-AZ-4615-01 12 10560212 10560212 G A KLRC4 3'UTR 0.36 TCGA-AZ-4615-01 12 106857284 106857285 - A POLR3B Frame_Shift_Ins p.V869Sfs*8 0.21 TCGA-AZ-4615-01 12 10780244 10780244 G A STYK1 Missense_Mutation p.A238V 0.31 deleterious(0) probably_damaging(0.968) TCGA-AZ-4615-01 12 108600156 108600156 G A WSCD2 Missense_Mutation p.R158H 0.33 tolerated(0.47) probably_damaging(0.913) TCGA-AZ-4615-01 12 110819602 110819602 G A ANAPC7 Missense_Mutation p.R397W 0.27 deleterious(0) probably_damaging(0.991) TCGA-AZ-4615-01 12 110834116 110834116 T - ANAPC7 Frame_Shift_Del p.V116* 0.26 TCGA-AZ-4615-01 12 110941673 110941673 A - RAD9B Frame_Shift_Del p.G39Vfs*4 0.24 TCGA-AZ-4615-01 12 11183667 11183667 C T TAS2R31 Missense_Mutation p.V90I 0.08 tolerated(0.19) benign(0.268) TCGA-AZ-4615-01 12 113303232 113303232 C T RPH3A Missense_Mutation p.R82C 0.55 deleterious(0) probably_damaging(0.989) TCGA-AZ-4615-01 12 113307596 113307596 A T RPH3A Nonsense_Mutation p.K215* 0.37 TCGA-AZ-4615-01 12 117768677 117768677 C T NOS1 Silent p.A66A 0.30 TCGA-AZ-4615-01 12 118599763 118599763 G A TAOK3 Nonsense_Mutation p.R657* 0.39 TCGA-AZ-4615-01 12 121880796 121880796 T - KDM2B Frame_Shift_Del p.K868Sfs*66 0.37 TCGA-AZ-4615-01 12 122243084 122243084 A - SETD1B Frame_Shift_Del p.N80Tfs*26 0.35 TCGA-AZ-4615-01 12 12252120 12252120 T C BCL2L14 3'UTR 0.18 TCGA-AZ-4615-01 12 123782558 123782558 G A SBNO1 Missense_Mutation p.R1336W 0.35 deleterious(0) possibly_damaging(0.656) TCGA-AZ-4615-01 12 125432679 125432679 C T DHX37 Silent p.K1113K 0.42 TCGA-AZ-4615-01 12 132446149 132446149 C A EP400 Missense_Mutation p.P329T 0.36 unknown(0) TCGA-AZ-4615-01 12 133252728 133252728 G - POLE Frame_Shift_Del p.K325Sfs*19 0.16 TCGA-AZ-4615-01 12 133331715 133331715 T C ANKLE2 Silent p.E62E 0.44 TCGA-AZ-4615-01 12 14958727 14958727 T C SMCO3 3'UTR 0.29 TCGA-AZ-4615-01 12 19410381 19410381 A - PLEKHA5 Frame_Shift_Del p.V152Ffs*33 0.35 TCGA-AZ-4615-01 12 21628405 21628405 C T RECQL Missense_Mutation p.A405T 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 12 21998655 21998655 A G ABCC9 Missense_Mutation p.L993P 0.40 tolerated(0.07) benign(0.09) TCGA-AZ-4615-01 12 22017393 22017393 A G ABCC9 Silent p.P739P 0.36 TCGA-AZ-4615-01 12 23687264 23687264 C A SOX5 Missense_Mutation p.Q727H 0.35 tolerated(0.25) benign(0.003) TCGA-AZ-4615-01 12 26784860 26784860 G T ITPR2 Missense_Mutation p.P958H 0.24 tolerated(0.15) benign(0) TCGA-AZ-4615-01 12 28116302 28116302 G A PTHLH Missense_Mutation p.T168M 0.34 deleterious_low_confidence(0) benign(0.055) TCGA-AZ-4615-01 12 2909268 2909268 C T FKBP4 Missense_Mutation p.R276W 0.40 deleterious(0) probably_damaging(0.959) TCGA-AZ-4615-01 12 39223219 39223219 G A CPNE8 Silent p.I123I 0.40 TCGA-AZ-4615-01 12 39734129 39734129 T - KIF21A Frame_Shift_Del p.V717Lfs*12 0.27 TCGA-AZ-4615-01 12 40657647 40657647 A - LRRK2 Frame_Shift_Del p.K535Nfs*13 0.26 TCGA-AZ-4615-01 12 44142404 44142404 G T PUS7L Missense_Mutation p.L307I 0.09 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 12 44162031 44162032 - A IRAK4 Frame_Shift_Ins p.P42Tfs*4 0.33 TCGA-AZ-4615-01 12 45568023 45568023 G T PLEKHA8P1 RNA 0.32 TCGA-AZ-4615-01 12 46230605 46230605 G A ARID2 Missense_Mutation p.R285Q 0.34 deleterious(0) probably_damaging(0.995) TCGA-AZ-4615-01 12 46315742 46315742 C T SCAF11 3'UTR 0.36 TCGA-AZ-4615-01 12 46321680 46321680 T - SCAF11 Frame_Shift_Del p.T602Qfs*5 0.22 TCGA-AZ-4615-01 12 46598170 46598170 T C SLC38A1 Missense_Mutation p.I246V 0.34 tolerated(0.14) benign(0.006) TCGA-AZ-4615-01 12 48119215 48119215 A - ENDOU 5'UTR 0.39 TCGA-AZ-4615-01 12 48388235 48388235 G T COL2A1 Missense_Mutation p.A263D 0.16 unknown(0) TCGA-AZ-4615-01 12 48579565 48579565 T C C12orf68 3'UTR 0.29 TCGA-AZ-4615-01 12 4923936 4923936 T C KCNA6 3'UTR 0.40 TCGA-AZ-4615-01 12 49315911 49315911 C A FKBP11 Missense_Mutation p.K154N 0.37 tolerated(0.77) benign(0.01) TCGA-AZ-4615-01 12 49425510 49425510 G - KMT2D Frame_Shift_Del p.S4327Afs*57 0.29 TCGA-AZ-4615-01 12 49427682 49427682 T C KMT2D Silent p.Q3602Q 0.34 TCGA-AZ-4615-01 12 49433264 49433264 G A KMT2D Missense_Mutation p.A2728V 0.19 benign(0.374) TCGA-AZ-4615-01 12 49522545 49522545 G T TUBA1B Silent p.P184P 0.30 TCGA-AZ-4615-01 12 49726891 49726891 G A C1QL4 Silent p.G221G 0.34 TCGA-AZ-4615-01 12 5024810 5024810 A - KCNA1 3'UTR 0.27 TCGA-AZ-4615-01 12 5027256 5027256 T C KCNA1 3'UTR 0.36 TCGA-AZ-4615-01 12 52795111 52795111 G A KRT82 Missense_Mutation p.R215C 0.37 deleterious(0) probably_damaging(0.98) TCGA-AZ-4615-01 12 53585773 53585773 A G ITGB7 Missense_Mutation p.L729P 0.29 deleterious(0.03) possibly_damaging(0.583) TCGA-AZ-4615-01 12 53898507 53898507 G A TARBP2 Missense_Mutation p.R174Q 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4615-01 12 54379114 54379114 G A HOXC10 Missense_Mutation p.R24H 0.37 tolerated(0.09) benign(0.005) TCGA-AZ-4615-01 12 54792390 54792390 T C ITGA5 Silent p.K978K 0.10 TCGA-AZ-4615-01 12 54893249 54893249 G A NCKAP1L Silent p.T71T 0.41 TCGA-AZ-4615-01 12 55421251 55421251 G A NEUROD4 3'UTR 0.41 TCGA-AZ-4615-01 12 55714886 55714886 G T OR6C1 Missense_Mutation p.R168M 0.36 deleterious_low_confidence(0.05) possibly_damaging(0.537) TCGA-AZ-4615-01 12 5604418 5604418 A G NTF3 3'UTR 0.33 TCGA-AZ-4615-01 12 56119264 56119265 - A CD63 3'Flank 0.47 TCGA-AZ-4615-01 12 56676769 56676769 G A CS Missense_Mutation p.R92C 0.34 deleterious(0.03) benign(0.071) TCGA-AZ-4615-01 12 57181319 57181319 C A HSD17B6 3'UTR 0.30 TCGA-AZ-4615-01 12 58020682 58020682 G A B4GALNT1 Missense_Mutation p.H483Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-AZ-4615-01 12 58157486 58157486 G - CYP27B1 Frame_Shift_Del p.H441Tfs*33 0.30 TCGA-AZ-4615-01 12 58174037 58174037 G - METTL21B Splice_Site p.X99_splice 0.22 TCGA-AZ-4615-01 12 58179974 58179976 AGA - TSFM In_Frame_Del p.K88del 0.29 TCGA-AZ-4615-01 12 66531700 66531700 T - TMBIM4 3'UTR 0.44 TCGA-AZ-4615-01 12 6950768 6950768 G A GNB3 Missense_Mutation p.A26T 0.31 tolerated(0.59) benign(0.026) TCGA-AZ-4615-01 12 81046584 81046585 - A PTPRQ Frame_Shift_Ins p.N2027Kfs*10 0.41 TCGA-AZ-4615-01 12 82746932 82746932 A G CCDC59 Nonstop_Mutation p.*242Qext*26 0.08 TCGA-AZ-4615-01 12 9006821 9006821 G A A2ML1 Silent p.T896T 0.48 TCGA-AZ-4615-01 12 93100661 93100661 C A C12orf74 Nonsense_Mutation p.S85* 0.33 TCGA-AZ-4615-01 12 94763661 94763663 AGC - CCDC41 Intron 0.29 TCGA-AZ-4615-01 13 101315408 101315408 A G TMTC4 Missense_Mutation p.F121S 0.48 deleterious(0.02) benign(0.005) TCGA-AZ-4615-01 13 103698397 103698397 C T SLC10A2 3'UTR 0.42 TCGA-AZ-4615-01 13 19752452 19752452 G A TUBA3C Silent p.Y103Y 0.32 TCGA-AZ-4615-01 13 20717209 20717209 G T GJA3 Silent p.S73S 0.38 TCGA-AZ-4615-01 13 21736011 21736011 C A SKA3 Missense_Mutation p.E249D 0.40 tolerated(0.31) benign(0.066) TCGA-AZ-4615-01 13 23906965 23906965 C T SACS Missense_Mutation p.G3684R 0.31 probably_damaging(0.999) TCGA-AZ-4615-01 13 25029268 25029268 T C PARP4 Missense_Mutation p.D882G 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 13 26117536 26117536 T C ATP8A2 Missense_Mutation p.M296T 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 13 27256797 27256797 C T WASF3 Missense_Mutation p.P346L 0.37 tolerated(0.07) benign(0.063) TCGA-AZ-4615-01 13 29855919 29855919 G A MTUS2 Missense_Mutation p.R918Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4615-01 13 33017352 33017352 T A N4BP2L2 Missense_Mutation p.K441I 0.38 deleterious(0) possibly_damaging(0.447) TCGA-AZ-4615-01 13 38154805 38154805 C A POSTN Missense_Mutation p.E474D 0.42 tolerated(0.11) benign(0.154) TCGA-AZ-4615-01 13 39425887 39425887 G A FREM2 Silent p.S2269S 0.33 TCGA-AZ-4615-01 13 41331145 41331145 T C MRPS31 Missense_Mutation p.S202G 0.50 tolerated(0.08) benign(0.023) TCGA-AZ-4615-01 13 42465615 42465616 TC - VWA8 Frame_Shift_Del p.E197Dfs*4 0.35 TCGA-AZ-4615-01 13 45517784 45517784 G A NUFIP1 Silent p.D388D 0.35 TCGA-AZ-4615-01 13 46730584 46730584 G A LCP1 Silent p.G160G 0.39 TCGA-AZ-4615-01 13 60584683 60584683 C T DIAPH3 Missense_Mutation p.V298I 0.43 tolerated(0.14) probably_damaging(0.992) TCGA-AZ-4615-01 13 86369157 86369157 T C SLITRK6 Missense_Mutation p.H496R 0.34 tolerated(0.06) probably_damaging(0.96) TCGA-AZ-4615-01 13 95097979 95097979 A G DCT Silent p.H424H 0.26 TCGA-AZ-4615-01 13 95735432 95735432 A - ABCC4 Frame_Shift_Del p.L883Wfs*7 0.21 TCGA-AZ-4615-01 13 99337031 99337031 C T SLC15A1 Missense_Mutation p.E692K 0.38 tolerated(0.29) benign(0.009) TCGA-AZ-4615-01 14 100594926 100594927 - C EVL Frame_Shift_Ins p.P190Tfs*108 0.27 TCGA-AZ-4615-01 14 101507716 101507716 G A MIR300 RNA 0.27 TCGA-AZ-4615-01 14 102822123 102822123 C A CINP Missense_Mutation p.Q111H 0.12 tolerated(0.15) benign(0.052) TCGA-AZ-4615-01 14 103434636 103434636 G A CDC42BPB Missense_Mutation p.A767V 0.37 tolerated(0.39) benign(0.001) TCGA-AZ-4615-01 14 105419305 105419305 G A AHNAK2 Missense_Mutation p.A828V 0.42 benign(0.382) TCGA-AZ-4615-01 14 20345011 20345011 G T OR4K2 Silent p.L195L 0.17 TCGA-AZ-4615-01 14 21831101 21831101 C T SUPT16H Missense_Mutation p.R506H 0.32 deleterious(0.01) possibly_damaging(0.8) TCGA-AZ-4615-01 14 23865993 23865993 C A MYH6 Missense_Mutation p.E734D 0.34 tolerated(0.15) benign(0.009) TCGA-AZ-4615-01 14 35222777 35222777 G A BAZ1A Silent p.H1536H 0.38 TCGA-AZ-4615-01 14 35593397 35593397 G - KIAA0391 Frame_Shift_Del p.E317Sfs*7 0.20 TCGA-AZ-4615-01 14 38680631 38680633 CTA - SSTR1 3'UTR 0.23 TCGA-AZ-4615-01 14 44975751 44975751 G - FSCB Frame_Shift_Del p.P147Lfs*2 0.23 TCGA-AZ-4615-01 14 45433645 45433645 C T FAM179B Missense_Mutation p.T674I 0.23 tolerated(0.06) benign(0.272) TCGA-AZ-4615-01 14 50789326 50789326 A G ATP5S Missense_Mutation p.R84G 0.37 deleterious(0) benign(0.396) TCGA-AZ-4615-01 14 50930796 50930796 T - MAP4K5 Frame_Shift_Del p.R265Dfs*8 0.27 TCGA-AZ-4615-01 14 51087375 51087375 C T ATL1 Silent p.P307P 0.26 TCGA-AZ-4615-01 14 51221342 51221342 G A NIN Missense_Mutation p.T1558M 0.30 deleterious(0.01) benign(0.299) TCGA-AZ-4615-01 14 51560856 51560856 C - TRIM9 Frame_Shift_Del p.A268Pfs*14 0.26 TCGA-AZ-4615-01 14 53513330 53513330 T - DDHD1 3'UTR 0.66 TCGA-AZ-4615-01 14 60591754 60591754 A G PCNXL4 Silent p.S721S 0.31 TCGA-AZ-4615-01 14 65009877 65009877 G A HSPA2 3'UTR 0.34 TCGA-AZ-4615-01 14 65550894 65550894 T - MAX Intron 0.28 TCGA-AZ-4615-01 14 70991186 70991186 C T ADAM20 Missense_Mutation p.A147T 0.33 tolerated(0.05) benign(0.083) TCGA-AZ-4615-01 14 72137901 72137902 - C SIPA1L1 Frame_Shift_Ins p.K776* 0.22 TCGA-AZ-4615-01 14 73572673 73572673 C T RBM25 Missense_Mutation p.R421W 0.39 unknown(0) TCGA-AZ-4615-01 14 74206186 74206186 C A ELMSAN1 Missense_Mutation p.D176Y 0.33 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-AZ-4615-01 14 75230947 75230947 C - YLPM1 Frame_Shift_Del p.P254Lfs*35 0.34 TCGA-AZ-4615-01 14 77880319 77880319 C T NOXRED1 Missense_Mutation p.A103T 0.33 tolerated(0.21) benign(0.151) TCGA-AZ-4615-01 14 81943279 81943279 C A SEL1L 3'UTR 0.41 TCGA-AZ-4615-01 14 89087182 89087182 T - EML5 Frame_Shift_Del p.N1764Mfs*8 0.26 TCGA-AZ-4615-01 14 92624055 92624055 A - CPSF2 Frame_Shift_Del p.I552Sfs*5 0.25 TCGA-AZ-4615-01 14 94069765 94069765 G A UNC79 Splice_Site p.X1075_splice 0.24 TCGA-AZ-4615-01 14 96707653 96707653 C T BDKRB2 Silent p.L330L 0.32 TCGA-AZ-4615-01 14 96781759 96781759 C T ATG2B Missense_Mutation p.V1175I 0.39 tolerated(0.31) possibly_damaging(0.681) TCGA-AZ-4615-01 15 25221552 25221552 C - SNRPN Frame_Shift_Del p.D89Ifs*53 0.30 TCGA-AZ-4615-01 15 25223444 25223444 C - SNRPN Frame_Shift_Del p.P223Lfs*39 0.28 TCGA-AZ-4615-01 15 27182372 27182372 C T GABRA5 Silent p.N207N 0.28 TCGA-AZ-4615-01 15 28387409 28387409 G A HERC2 Missense_Mutation p.P3892L 0.35 benign(0.003) TCGA-AZ-4615-01 15 29415563 29415563 A G FAM189A1 Silent p.A533A 0.11 TCGA-AZ-4615-01 15 33928674 33928674 T C RYR3 Missense_Mutation p.I1160T 0.29 benign(0.36) TCGA-AZ-4615-01 15 33954582 33954582 C T RYR3 Silent p.S1617S 0.49 TCGA-AZ-4615-01 15 33962732 33962732 G A RYR3 Silent p.P1945P 0.35 TCGA-AZ-4615-01 15 43351981 43351981 C T UBR1 Missense_Mutation p.V302I 0.37 tolerated(0.22) benign(0.309) TCGA-AZ-4615-01 15 43827342 43827342 G A PPIP5K1 Missense_Mutation p.P1278S 0.39 tolerated_low_confidence(0.18) benign(0.001) TCGA-AZ-4615-01 15 43896287 43896287 T A STRC Nonsense_Mutation p.R1428* 0.32 TCGA-AZ-4615-01 15 43896596 43896596 A G STRC Missense_Mutation p.F1394S 0.33 deleterious(0) possibly_damaging(0.707) TCGA-AZ-4615-01 15 48779347 48779347 C T FBN1 Missense_Mutation p.V1172M 0.24 possibly_damaging(0.852) TCGA-AZ-4615-01 15 48936875 48936875 G A FBN1 Missense_Mutation p.A31V 0.35 benign(0.007) TCGA-AZ-4615-01 15 50789375 50789375 A - USP8 Frame_Shift_Del p.K997Rfs*2 0.25 TCGA-AZ-4615-01 15 52161562 52161563 AA - TMOD3 Frame_Shift_Del p.K94Rfs*22 0.25 TCGA-AZ-4615-01 15 53908071 53908071 T - WDR72 Frame_Shift_Del p.M778Cfs*9 0.23 TCGA-AZ-4615-01 15 58458987 58458987 G A AQP9 Missense_Mutation p.G76D 0.30 deleterious(0) probably_damaging(0.986) TCGA-AZ-4615-01 15 59041719 59041732 TCTCAGCAACACCA - ADAM10 Frame_Shift_Del p.M1_?5 0.11 TCGA-AZ-4615-01 15 62283969 62283970 - T VPS13C Frame_Shift_Ins p.S463Vfs*3 0.28 TCGA-AZ-4615-01 15 63954157 63954157 C T HERC1 Missense_Mutation p.V2989I 0.53 benign(0.02) TCGA-AZ-4615-01 15 64231506 64231506 T A DAPK2 Missense_Mutation p.I170F 0.39 deleterious(0) probably_damaging(0.993) TCGA-AZ-4615-01 15 64966740 64966740 C T ZNF609 Missense_Mutation p.R563C 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-AZ-4615-01 15 64981353 64981353 T G OAZ2 Silent p.L123L 0.36 TCGA-AZ-4615-01 15 65748601 65748601 G A DPP8 Nonsense_Mutation p.R710* 0.10 TCGA-AZ-4615-01 15 71211452 71211452 T - LRRC49 Frame_Shift_Del p.L217* 0.30 TCGA-AZ-4615-01 15 72190721 72190721 T C MYO9A Missense_Mutation p.S1375G 0.40 tolerated_low_confidence(0.11) benign(0.003) TCGA-AZ-4615-01 15 72958316 72958316 G T GOLGA6B Missense_Mutation p.V601L 0.24 tolerated(0.11) benign(0.001) TCGA-AZ-4615-01 15 75586783 75586783 C T GOLGA6D Silent p.I683I 0.31 TCGA-AZ-4615-01 15 75664434 75664434 A G SIN3A Silent p.G1236G 0.33 TCGA-AZ-4615-01 15 75979693 75979693 G - CSPG4 Frame_Shift_Del p.P1238Hfs*2 0.38 TCGA-AZ-4615-01 15 76075166 76075166 C - RN7SL319P 5'Flank 0.20 TCGA-AZ-4615-01 15 78454655 78454655 A G IDH3A Missense_Mutation p.Y186C 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 15 78457414 78457414 A G IDH3A Missense_Mutation p.E287G 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 15 78575763 78575763 G T WDR61 3'UTR 0.38 TCGA-AZ-4615-01 15 79585749 79585749 T C ANKRD34C Silent p.N41N 0.39 TCGA-AZ-4615-01 15 82555272 82555272 G T FAM154B Missense_Mutation p.G18W 0.30 deleterious(0.01) probably_damaging(0.917) TCGA-AZ-4615-01 15 86284713 86284713 G A AKAP13 Missense_Mutation p.R2686Q 0.28 tolerated(0.43) benign(0.01) TCGA-AZ-4615-01 15 89015858 89015858 C T MRPS11 Silent p.S61S 0.39 TCGA-AZ-4615-01 15 89449068 89449068 G A MFGE8 Missense_Mutation p.A202V 0.63 tolerated(0.14) benign(0.101) TCGA-AZ-4615-01 15 91169033 91169033 C A CRTC3 Missense_Mutation p.L259I 0.36 tolerated(0.53) benign(0.002) TCGA-AZ-4615-01 15 91185235 91185235 G A CRTC3 Missense_Mutation p.V575M 0.46 tolerated(0.3) benign(0.031) TCGA-AZ-4615-01 15 91447530 91447530 C T MAN2A2 Silent p.H31H 0.32 TCGA-AZ-4615-01 15 99669903 99669903 T C SYNM Silent p.P445P 0.25 TCGA-AZ-4615-01 16 14989853 14989853 A G NOMO1 3'UTR 0.19 TCGA-AZ-4615-01 16 18586111 18586111 G A RP11-457I16.2 5'Flank 0.36 TCGA-AZ-4615-01 16 18591554 18591554 G A ABCC6P1 RNA 0.27 TCGA-AZ-4615-01 16 19278202 19278202 T - SYT17 Frame_Shift_Del p.F411Sfs*5 0.42 TCGA-AZ-4615-01 16 19451960 19451961 CT - TMC5 Frame_Shift_Del p.L202Gfs*4 0.27 TCGA-AZ-4615-01 16 20966143 20966143 C T DNAH3 Missense_Mutation p.G3688D 0.46 deleterious(0) probably_damaging(0.992) TCGA-AZ-4615-01 16 2278400 2278400 G A E4F1 Missense_Mutation p.R62H 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 16 24267998 24267998 C T CACNG3 5'UTR 0.32 TCGA-AZ-4615-01 16 24366253 24366255 ACA - CACNG3 In_Frame_Del p.N133del 0.31 TCGA-AZ-4615-01 16 24922733 24922733 C T SLC5A11 Missense_Mutation p.P636L 0.35 deleterious(0.02) benign(0.002) TCGA-AZ-4615-01 16 27079726 27079726 C T C16orf82 RNA 0.40 TCGA-AZ-4615-01 16 29678272 29678272 A - SPN 3'UTR 0.26 TCGA-AZ-4615-01 16 30365561 30365563 TCC - CD2BP2 In_Frame_Del p.E53del 0.32 TCGA-AZ-4615-01 16 30369348 30369348 G A TBC1D10B Missense_Mutation p.R782C 0.28 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-AZ-4615-01 16 3165508 3165508 C A ZNF205 Silent p.A70A 0.34 TCGA-AZ-4615-01 16 3188430 3188430 G A ZNF213 Silent p.S137S 0.35 TCGA-AZ-4615-01 16 3433126 3433126 C T ZSCAN32 Missense_Mutation p.C395Y 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 16 47271886 47271886 C T ITFG1 Missense_Mutation p.R455H 0.33 tolerated(0.17) probably_damaging(0.936) TCGA-AZ-4615-01 16 4777022 4777022 G T ANKS3 Silent p.A109A 0.25 TCGA-AZ-4615-01 16 48130746 48130746 G T ABCC12 Missense_Mutation p.L1036I 0.41 tolerated(0.19) benign(0.004) TCGA-AZ-4615-01 16 5105333 5105333 C T C16orf89 Missense_Mutation p.G261D 0.39 deleterious(0.01) possibly_damaging(0.701) TCGA-AZ-4615-01 16 53691525 53691525 T - RPGRIP1L Frame_Shift_Del p.N474Mfs*7 0.25 TCGA-AZ-4615-01 16 54966756 54966758 ACG - IRX5 In_Frame_Del p.D200del 0.15 TCGA-AZ-4615-01 16 54966788 54966788 A G IRX5 Missense_Mutation p.K210E 0.18 tolerated(0.66) possibly_damaging(0.899) TCGA-AZ-4615-01 16 55523596 55523596 C - MMP2 Frame_Shift_Del p.C349Vfs*72 0.41 TCGA-AZ-4615-01 16 56519571 56519571 T A BBS2 Missense_Mutation p.N664Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4615-01 16 570497 570497 C T RAB11FIP3 Silent p.N685N 0.26 TCGA-AZ-4615-01 16 58568160 58568160 C T CNOT1 Missense_Mutation p.R1929Q 0.33 deleterious(0) benign(0.139) TCGA-AZ-4615-01 16 65016097 65016097 G A CDH11 Silent p.T369T 0.41 TCGA-AZ-4615-01 16 66974490 66974490 G A CES2 Silent p.S300S 0.34 TCGA-AZ-4615-01 16 68867467 68867468 - T CDH1 3'UTR 0.44 TCGA-AZ-4615-01 16 68964189 68964189 G A TANGO6 Missense_Mutation p.A898T 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-4615-01 16 69726896 69726896 C A NFAT5 Silent p.T1056T 0.31 TCGA-AZ-4615-01 16 74729381 74729381 C T MLKL Missense_Mutation p.S92N 0.28 tolerated(0.54) benign(0.009) TCGA-AZ-4615-01 16 74927654 74927654 G A WDR59 Silent p.I641I 0.28 TCGA-AZ-4615-01 16 74990473 74990473 G T WDR59 Missense_Mutation p.P47H 0.31 deleterious(0.01) possibly_damaging(0.838) TCGA-AZ-4615-01 16 81969933 81969933 G A PLCG2 Missense_Mutation p.R1001H 0.18 tolerated(0.06) benign(0.182) TCGA-AZ-4615-01 16 84459400 84459400 G A ATP2C2 Missense_Mutation p.G327R 0.42 deleterious(0) probably_damaging(0.994) TCGA-AZ-4615-01 16 89351595 89351595 T - ANKRD11 Frame_Shift_Del p.N452Ifs*3 0.28 TCGA-AZ-4615-01 16 89815126 89815126 C T FANCA Missense_Mutation p.A1097T 0.42 tolerated(0.07) possibly_damaging(0.483) TCGA-AZ-4615-01 16 89828358 89828358 G A FANCA Missense_Mutation p.R951W 0.26 deleterious(0) possibly_damaging(0.689) TCGA-AZ-4615-01 17 10432950 10432950 C A MYH2 Silent p.L1016L 0.43 TCGA-AZ-4615-01 17 10533470 10533472 TTC - MYH3 In_Frame_Del p.K1833del 0.33 TCGA-AZ-4615-01 17 10538291 10538291 C G MYH3 Missense_Mutation p.V1408L 0.22 tolerated(0.12) benign(0.019) TCGA-AZ-4615-01 17 15620379 15620379 C T ZNF286A Silent p.F447F 0.41 TCGA-AZ-4615-01 17 1648293 1648293 G A SERPINF2 Missense_Mutation p.A2T 0.50 deleterious_low_confidence(0.04) benign(0.06) TCGA-AZ-4615-01 17 18044409 18044409 G A MYO15A Missense_Mutation p.R1828H 0.48 unknown(0) TCGA-AZ-4615-01 17 18565824 18565824 C T ZNF286B Missense_Mutation p.C332Y 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 17 18566057 18566057 G T ZNF286B Silent p.T254T 0.35 TCGA-AZ-4615-01 17 2186045 2186045 G T SMG6 Missense_Mutation p.L853M 0.38 deleterious(0.03) possibly_damaging(0.897) TCGA-AZ-4615-01 17 2279976 2279976 A G SGSM2 Intron 0.33 TCGA-AZ-4615-01 17 25630440 25630440 T C WSB1 Missense_Mutation p.L86S 0.45 tolerated(0.82) benign(0.372) TCGA-AZ-4615-01 17 25909674 25909674 G T KSR1 Missense_Mutation p.G38W 0.31 deleterious(0) possibly_damaging(0.757) TCGA-AZ-4615-01 17 26449642 26449642 C T NLK Missense_Mutation p.P158S 0.36 tolerated(0.28) probably_damaging(1) TCGA-AZ-4615-01 17 26521734 26521734 G A NLK 3'UTR 0.38 TCGA-AZ-4615-01 17 27076269 27076269 C A TRAF4 Missense_Mutation p.L363I 0.46 tolerated(0.17) benign(0.256) TCGA-AZ-4615-01 17 27216012 27216012 C T FLOT2 Missense_Mutation p.V28M 0.42 deleterious(0.02) benign(0.269) TCGA-AZ-4615-01 17 27424354 27424354 G A MYO18A Silent p.L1373L 0.41 TCGA-AZ-4615-01 17 27434173 27434173 G A MYO18A Silent p.R1122R 0.38 TCGA-AZ-4615-01 17 27905361 27905361 G A GIT1 Missense_Mutation p.A289V 0.31 tolerated(0.13) possibly_damaging(0.492) TCGA-AZ-4615-01 17 29214208 29214208 A G ATAD5 Splice_Site p.X1360_splice 0.35 TCGA-AZ-4615-01 17 29222118 29222118 T - ATAD5 3'UTR 0.30 TCGA-AZ-4615-01 17 29579996 29579996 A - NF1 Frame_Shift_Del p.K1386Rfs*20 0.22 TCGA-AZ-4615-01 17 33325651 33325651 G T LIG3 Missense_Mutation p.W673L 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 17 3436156 3436156 G A TRPV3 Missense_Mutation p.T287M 0.35 deleterious(0) possibly_damaging(0.632) TCGA-AZ-4615-01 17 34869254 34869254 C T MYO19 Intron 0.41 TCGA-AZ-4615-01 17 35902664 35902664 A G SYNRG Missense_Mutation p.I871T 0.35 tolerated_low_confidence(0.3) benign(0.003) TCGA-AZ-4615-01 17 37417794 37417794 G A FBXL20 Silent p.H410H 0.34 TCGA-AZ-4615-01 17 37829031 37829032 - T PGAP3 3'UTR 0.31 TCGA-AZ-4615-01 17 38504623 38504624 - C RARA Frame_Shift_Ins p.L81Sfs*26 0.20 TCGA-AZ-4615-01 17 39503344 39503344 C T KRT33A Missense_Mutation p.R240H 0.43 tolerated(0.15) benign(0.178) TCGA-AZ-4615-01 17 39520175 39520175 A G KRT33B Silent p.N376N 0.37 TCGA-AZ-4615-01 17 39780413 39780413 G A KRT17 Missense_Mutation p.R117C 0.37 deleterious(0.01) possibly_damaging(0.832) TCGA-AZ-4615-01 17 39780697 39780697 C - KRT17 Frame_Shift_Del p.G22Afs*93 0.34 TCGA-AZ-4615-01 17 3984725 3984725 T C ZZEF1 Missense_Mutation p.N925S 0.11 deleterious(0.02) benign(0.027) TCGA-AZ-4615-01 17 39883668 39883668 T A HAP1 Intron 0.29 TCGA-AZ-4615-01 17 40729536 40729536 G T PSMC3IP Silent p.P26P 0.48 TCGA-AZ-4615-01 17 41606509 41606509 C T ETV4 Missense_Mutation p.M408I 0.27 deleterious(0) probably_damaging(0.985) TCGA-AZ-4615-01 17 44127984 44127984 A G KANSL1 Silent p.P645P 0.35 TCGA-AZ-4615-01 17 4442079 4442079 A G SPNS2 3'UTR 0.36 TCGA-AZ-4615-01 17 4442644 4442644 A T MYBBP1A Intron 0.33 TCGA-AZ-4615-01 17 4712826 4712826 G A PLD2 Silent p.P198P 0.30 TCGA-AZ-4615-01 17 4848026 4848026 C T RNF167 Silent p.C256C 0.26 TCGA-AZ-4615-01 17 48631728 48631728 T - SPATA20 Frame_Shift_Del p.S693Pfs*29 0.09 TCGA-AZ-4615-01 17 53345077 53345077 T - HLF Intron 0.50 TCGA-AZ-4615-01 17 53798136 53798136 A - TMEM100 Frame_Shift_Del p.L99Yfs*2 0.43 TCGA-AZ-4615-01 17 56232887 56232887 G A OR4D1 Missense_Mutation p.A125T 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4615-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.40 TCGA-AZ-4615-01 17 56492740 56492740 C A RNF43 Missense_Mutation p.G67C 0.47 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 17 60782843 60782843 A - MARCH10 Intron 0.28 TCGA-AZ-4615-01 17 6510214 6510214 A G KIAA0753 Missense_Mutation p.M663T 0.30 deleterious(0.02) benign(0.027) TCGA-AZ-4615-01 17 651171 651171 C T GEMIN4 Missense_Mutation p.D38N 0.31 deleterious(0) probably_damaging(0.993) TCGA-AZ-4615-01 17 67285434 67285434 G A ABCA5 Nonsense_Mutation p.Q596* 0.25 TCGA-AZ-4615-01 17 6913576 6913576 A G ALOX12 Missense_Mutation p.H609R 0.27 tolerated(0.13) benign(0.128) TCGA-AZ-4615-01 17 71204488 71204488 G A COG1 Silent p.P947P 0.35 TCGA-AZ-4615-01 17 71427647 71427647 C T SDK2 Missense_Mutation p.V492I 0.34 deleterious(0.03) possibly_damaging(0.757) TCGA-AZ-4615-01 17 72233586 72233586 G - TTYH2 Frame_Shift_Del p.V190Cfs*9 0.24 TCGA-AZ-4615-01 17 7257360 7257360 G A KCTD11 3'UTR 0.36 TCGA-AZ-4615-01 17 72921012 72921012 C T OTOP2 Silent p.D95D 0.41 TCGA-AZ-4615-01 17 72938124 72938124 G A OTOP3 Missense_Mutation p.G207S 0.31 tolerated(0.14) benign(0.007) TCGA-AZ-4615-01 17 76502867 76502867 G - DNAH17 Frame_Shift_Del p.R1576Gfs*23 0.24 TCGA-AZ-4615-01 17 76810578 76810578 A G USP36 Silent p.G360G 0.29 TCGA-AZ-4615-01 17 7793929 7793929 G A CHD3 Missense_Mutation p.R144Q 0.36 benign(0.238) TCGA-AZ-4615-01 17 78313961 78313961 G T RNF213 Missense_Mutation p.G1932W 0.37 possibly_damaging(0.765) TCGA-AZ-4615-01 17 78363053 78363053 C T RNF213 Silent p.V5027V 0.43 TCGA-AZ-4615-01 17 78444761 78444761 C T NPTX1 Missense_Mutation p.R384H 0.35 tolerated(0.34) benign(0.2) TCGA-AZ-4615-01 17 7847523 7847523 C T CNTROB Nonsense_Mutation p.R510* 0.15 TCGA-AZ-4615-01 17 79220014 79220014 G A SLC38A10 Missense_Mutation p.A901V 0.33 tolerated(0.09) benign(0.434) TCGA-AZ-4615-01 17 8809020 8809020 G - PIK3R5 Frame_Shift_Del p.P80Rfs*24 0.35 TCGA-AZ-4615-01 18 10671476 10671476 A - PIEZO2 3'Flank 0.31 TCGA-AZ-4615-01 18 13742579 13742579 G A RNMT Missense_Mutation p.C356Y 0.43 deleterious(0) probably_damaging(0.992) TCGA-AZ-4615-01 18 28986146 28986146 G T DSG4 Missense_Mutation p.M581I 0.34 tolerated(0.49) benign(0) TCGA-AZ-4615-01 18 28993243 28993243 C T DSG4 Silent p.T955T 0.45 TCGA-AZ-4615-01 18 3129427 3129427 G - MYOM1 Frame_Shift_Del p.P866Rfs*31 0.24 TCGA-AZ-4615-01 18 32888086 32888090 AAAAC - ZNF271 RNA 0.24 TCGA-AZ-4615-01 18 40695529 40695529 G A RIT2 5'UTR 0.24 TCGA-AZ-4615-01 18 42529935 42529935 C A SETBP1 Missense_Mutation p.H210Q 0.40 deleterious(0) probably_damaging(0.996) TCGA-AZ-4615-01 18 44013368 44013368 G A RNF165 Missense_Mutation p.V93I 0.22 tolerated(0.27) benign(0.002) TCGA-AZ-4615-01 18 5956282 5956282 C T L3MBTL4 Missense_Mutation p.M603I 0.40 deleterious(0.05) benign(0.027) TCGA-AZ-4615-01 18 67781786 67781786 C T RTTN Missense_Mutation p.R1193Q 0.38 tolerated(0.75) benign(0.001) TCGA-AZ-4615-01 18 67863839 67863839 G A RTTN Missense_Mutation p.R247C 0.31 deleterious(0.04) probably_damaging(0.939) TCGA-AZ-4615-01 18 67992202 67992202 G A SOCS6 Missense_Mutation p.D100N 0.43 deleterious_low_confidence(0) benign(0.015) TCGA-AZ-4615-01 18 67994371 67994371 T - SOCS6 3'UTR 0.27 TCGA-AZ-4615-01 18 72913505 72913505 G T ZADH2 Missense_Mutation p.L334I 0.43 tolerated(0.4) benign(0.082) TCGA-AZ-4615-01 18 74592076 74592076 T - ZNF236 Frame_Shift_Del p.Q331Rfs*24 0.19 TCGA-AZ-4615-01 18 77805900 77805900 C T RBFA Silent p.L259L 0.47 TCGA-AZ-4615-01 18 8831678 8831678 G A SOGA2 3'UTR 0.38 TCGA-AZ-4615-01 18 9535963 9535963 T C RALBP1 3'UTR 0.39 TCGA-AZ-4615-01 18 9595040 9595040 G A PPP4R1 Missense_Mutation p.A55V 0.43 tolerated(0.11) possibly_damaging(0.701) TCGA-AZ-4615-01 19 10446402 10446402 G T ICAM3 Silent p.P198P 0.31 TCGA-AZ-4615-01 19 10979952 10979952 C - C19orf38 Frame_Shift_Del p.S203Afs*124 0.20 TCGA-AZ-4615-01 19 11283744 11283744 G A KANK2 Silent p.T716T 0.39 TCGA-AZ-4615-01 19 12639413 12639413 C T ZNF564 Missense_Mutation p.R34Q 0.30 tolerated(0.39) benign(0.091) TCGA-AZ-4615-01 19 12691588 12691588 C T ZNF490 Missense_Mutation p.R434Q 0.35 tolerated(0.76) benign(0.269) TCGA-AZ-4615-01 19 12945982 12945982 G A RTBDN 5'UTR 0.36 TCGA-AZ-4615-01 19 13616880 13616880 C T CACNA1A Silent p.A53A 0.31 TCGA-AZ-4615-01 19 16974608 16974609 GT - SIN3B Splice_Site p.X493_splice 0.36 TCGA-AZ-4615-01 19 17309029 17309029 A - MYO9B Frame_Shift_Del p.K1385Sfs*68 0.39 TCGA-AZ-4615-01 19 17752314 17752314 G A UNC13A Missense_Mutation p.P842S 0.46 deleterious(0) probably_damaging(0.998) TCGA-AZ-4615-01 19 17766924 17766926 CCT - UNC13A In_Frame_Del p.E350del 0.25 TCGA-AZ-4615-01 19 18177476 18177476 C T IL12RB1 Silent p.S453S 0.47 TCGA-AZ-4615-01 19 18273923 18273923 C T PIK3R2 Missense_Mutation p.T419I 0.37 tolerated(0.36) benign(0.024) TCGA-AZ-4615-01 19 19335238 19335238 G - NCAN Frame_Shift_Del 0.35 TCGA-AZ-4615-01 19 2112915 2112915 C T AP3D1 Missense_Mutation p.A911T 0.17 tolerated_low_confidence(0.57) benign(0.123) TCGA-AZ-4615-01 19 21561213 21561213 T C ZNF738 3'UTR 0.40 TCGA-AZ-4615-01 19 2794856 2794856 C T THOP1 Silent p.F108F 0.27 TCGA-AZ-4615-01 19 33700368 33700368 C T SLC7A10 Silent p.A429A 0.32 TCGA-AZ-4615-01 19 33873111 33873111 T C CEBPG 3'UTR 0.26 TCGA-AZ-4615-01 19 36001284 36001284 C - DMKN Intron 0.35 TCGA-AZ-4615-01 19 36041947 36041947 G A ATP4A Silent p.P984P 0.27 TCGA-AZ-4615-01 19 36218100 36218100 C T KMT2B Silent p.D1349D 0.40 TCGA-AZ-4615-01 19 38376035 38376035 T - WDR87 Frame_Shift_Del p.K2720Rfs*57 0.45 TCGA-AZ-4615-01 19 39408571 39408571 T C SARS2 Missense_Mutation p.H349R 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-AZ-4615-01 19 39819393 39819393 C T GMFG Intron 0.38 TCGA-AZ-4615-01 19 40743904 40743904 G A AKT2 Missense_Mutation p.S268L 0.13 tolerated(0.07) possibly_damaging(0.763) TCGA-AZ-4615-01 19 41173330 41173330 C T NUMBL 3'UTR 0.30 TCGA-AZ-4615-01 19 41810066 41810066 G A HNRNPUL1 Missense_Mutation p.R721Q 0.33 tolerated_low_confidence(0.08) benign(0.238) TCGA-AZ-4615-01 19 41931549 41931549 C A B3GNT8 Missense_Mutation p.G379C 0.35 deleterious(0.01) benign(0.319) TCGA-AZ-4615-01 19 42192044 42192044 C - CEACAM7 Frame_Shift_Del p.L18Sfs*8 0.45 TCGA-AZ-4615-01 19 44048377 44048377 T C XRCC1 Missense_Mutation p.Q544R 0.31 tolerated(0.35) benign(0.299) TCGA-AZ-4615-01 19 44351735 44351735 T - ZNF283 Frame_Shift_Del p.W330Gfs*10 0.29 TCGA-AZ-4615-01 19 44611587 44611587 A - ZNF224 Frame_Shift_Del p.K426Nfs*47 0.26 TCGA-AZ-4615-01 19 47282001 47282001 C T SLC1A5 Missense_Mutation p.R330H 0.26 deleterious(0.03) probably_damaging(0.992) TCGA-AZ-4615-01 19 47774352 47774352 C T CCDC9 Missense_Mutation p.R367C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 19 47969165 47969165 C T SLC8A2 Missense_Mutation p.V166M 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 19 48601517 48601518 - T PLA2G4C Splice_Site p.X160_splice 0.22 TCGA-AZ-4615-01 19 49316528 49316528 C T HSD17B14 Silent p.T239T 0.33 TCGA-AZ-4615-01 19 49360715 49360715 C T PLEKHA4 Silent p.P337P 0.41 TCGA-AZ-4615-01 19 49486010 49486010 C T GYS1 Missense_Mutation p.R303Q 0.26 deleterious(0.04) benign(0.395) TCGA-AZ-4615-01 19 4950980 4950980 G A UHRF1 RNA 0.44 TCGA-AZ-4615-01 19 50752359 50752359 T C MYH14 Missense_Mutation p.L482P 0.45 deleterious(0) probably_damaging(0.981) TCGA-AZ-4615-01 19 50847946 50847946 C T NAPSB RNA 0.50 TCGA-AZ-4615-01 19 5211674 5211674 G A PTPRS Missense_Mutation p.R1721W 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 19 52496398 52496398 C T ZNF615 Missense_Mutation p.R655Q 0.37 tolerated(0.09) probably_damaging(0.994) TCGA-AZ-4615-01 19 52497183 52497183 G T ZNF615 Silent p.T393T 0.35 TCGA-AZ-4615-01 19 52570129 52570129 G A ZNF841 Missense_Mutation p.R336W 0.31 tolerated(0.2) benign(0.001) TCGA-AZ-4615-01 19 53343335 53343335 G A ZNF468 3'UTR 0.17 TCGA-AZ-4615-01 19 53857274 53857274 G A ZNF845 3'UTR 0.39 TCGA-AZ-4615-01 19 53995913 53995913 C T ZNF813 3'UTR 0.38 TCGA-AZ-4615-01 19 54782202 54782202 G A LILRB2 Silent p.H390H 0.39 TCGA-AZ-4615-01 19 56228100 56228100 C A NLRP9 Missense_Mutation p.R775M 0.27 tolerated(0.05) benign(0.17) TCGA-AZ-4615-01 19 57956387 57956387 G A ZNF749 Missense_Mutation p.R624H 0.47 tolerated(0.29) benign(0) TCGA-AZ-4615-01 19 58232421 58232421 C T ZNF671 Missense_Mutation p.E345K 0.42 tolerated(0.15) possibly_damaging(0.712) TCGA-AZ-4615-01 19 58265566 58265566 G A ZNF776 Silent p.S356S 0.31 TCGA-AZ-4615-01 19 58386040 58386040 C T ZNF814 Missense_Mutation p.E240K 0.45 tolerated(0.6) probably_damaging(0.931) TCGA-AZ-4615-01 19 58948474 58948474 C T ZNF132 Missense_Mutation p.A58T 0.31 tolerated(0.28) benign(0.009) TCGA-AZ-4615-01 19 6026228 6026229 - T RFX2 Frame_Shift_Ins p.N181Kfs*26 0.23 TCGA-AZ-4615-01 19 6680185 6680185 G A C3 Silent p.Y1480Y 0.33 TCGA-AZ-4615-01 19 6822286 6822286 G A VAV1 Silent p.A168A 0.37 TCGA-AZ-4615-01 19 7267510 7267510 G A INSR Silent p.S166S 0.43 TCGA-AZ-4615-01 19 8188813 8188813 G A FBN3 Silent p.D937D 0.39 TCGA-AZ-4615-01 19 8613001 8613002 - T MYO1F Frame_Shift_Ins p.N396Kfs*13 0.27 TCGA-AZ-4615-01 19 9296994 9296994 C T OR7D2 Silent p.C179C 0.33 TCGA-AZ-4615-01 19 9800878 9800878 C T ZNF812 Missense_Mutation p.R434K 0.23 tolerated(1) benign(0.24) TCGA-AZ-4615-01 1 10521671 10521671 C T DFFA Missense_Mutation p.R291Q 0.23 tolerated(1) benign(0.001) TCGA-AZ-4615-01 1 110714776 110714776 C T SLC6A17 Silent p.G127G 0.40 TCGA-AZ-4615-01 1 110735195 110735195 G A SLC6A17 Missense_Mutation p.V392I 0.53 tolerated(0.87) benign(0.021) TCGA-AZ-4615-01 1 11188983 11188983 C A MTOR Missense_Mutation p.G1914C 0.44 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 1 11205059 11205059 G A MTOR Missense_Mutation p.A1577V 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 1 113212701 113212701 G A CAPZA1 Missense_Mutation p.D270N 0.66 tolerated(0.08) benign(0.3) TCGA-AZ-4615-01 1 115167962 115167962 C A DENND2C Missense_Mutation p.R215M 0.60 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 1 11917696 11917696 C T NPPB 3'UTR 0.51 TCGA-AZ-4615-01 1 119575923 119575923 G T WARS2 Missense_Mutation p.P232T 0.38 tolerated(0.07) benign(0.446) TCGA-AZ-4615-01 1 12907918 12907918 A G HNRNPCL1 Silent p.I75I 0.09 TCGA-AZ-4615-01 1 145109662 145109662 A G SEC22B RNA 0.08 TCGA-AZ-4615-01 1 145416493 145416493 T A HFE2 Missense_Mutation p.Y280N 0.32 deleterious(0) probably_damaging(0.978) TCGA-AZ-4615-01 1 145588439 145588439 T C NUDT17 Missense_Mutation p.E145G 0.31 deleterious(0) probably_damaging(0.993) TCGA-AZ-4615-01 1 145761373 145761373 C T PDZK1 Missense_Mutation p.R396W 0.34 deleterious(0) benign(0.059) TCGA-AZ-4615-01 1 150131488 150131488 C T PLEKHO1 Nonsense_Mutation p.R334* 0.34 TCGA-AZ-4615-01 1 151020704 151020704 G A C1orf56 Silent p.A127A 0.28 TCGA-AZ-4615-01 1 151134433 151134433 T - LYSMD1 Frame_Shift_Del p.V109Yfs*68 0.27 TCGA-AZ-4615-01 1 152082181 152082181 C T TCHH Missense_Mutation p.R1171H 0.32 unknown(0) TCGA-AZ-4615-01 1 152083040 152083040 G A TCHH Missense_Mutation p.R885C 0.37 unknown(0) TCGA-AZ-4615-01 1 152277362 152277362 C T FLG Missense_Mutation p.G3334R 0.38 unknown(0) TCGA-AZ-4615-01 1 153433102 153433102 C T S100A7 5'UTR 0.36 TCGA-AZ-4615-01 1 153788849 153788849 A C GATAD2B Silent p.P372P 0.33 TCGA-AZ-4615-01 1 153800699 153800699 C T GATAD2B Missense_Mutation p.R42H 0.32 deleterious(0) probably_damaging(0.987) TCGA-AZ-4615-01 1 154031143 154031143 A - NUP210L Frame_Shift_Del p.F959Lfs*32 0.25 TCGA-AZ-4615-01 1 155448996 155448996 T - ASH1L Frame_Shift_Del p.K1222Rfs*11 0.23 TCGA-AZ-4615-01 1 155629462 155629462 T C YY1AP1 Missense_Mutation p.S885G 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.808) TCGA-AZ-4615-01 1 156215973 156215975 GAG - PAQR6 5'UTR 0.38 TCGA-AZ-4615-01 1 156931470 156931470 G A ARHGEF11 Missense_Mutation p.A413V 0.37 deleterious(0) probably_damaging(0.927) TCGA-AZ-4615-01 1 157557255 157557255 G A FCRL4 Missense_Mutation p.R220W 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 1 157804489 157804489 G A CD5L Silent p.D142D 0.30 TCGA-AZ-4615-01 1 158436255 158436255 C T OR10K1 Nonsense_Mutation p.R302* 0.35 TCGA-AZ-4615-01 1 158533299 158533299 A - OR6P1 Frame_Shift_Del p.F32Lfs*6 0.76 TCGA-AZ-4615-01 1 158670396 158670396 G T OR6K2 Missense_Mutation p.A16D 0.36 tolerated(0.11) benign(0.002) TCGA-AZ-4615-01 1 15956874 15956874 G A DDI2 Missense_Mutation p.R108Q 0.38 tolerated(0.52) benign(0.004) TCGA-AZ-4615-01 1 161279764 161279764 G A MPZ 5'Flank 0.41 TCGA-AZ-4615-01 1 161695698 161695698 T C FCRLB Missense_Mutation p.V132A 0.46 deleterious(0) benign(0.254) TCGA-AZ-4615-01 1 16258240 16258240 C T SPEN Silent p.I1835I 0.45 TCGA-AZ-4615-01 1 165632336 165632336 T C ALDH9A1 Missense_Mutation p.Q503R 0.32 tolerated(0.14) probably_damaging(0.997) TCGA-AZ-4615-01 1 172002313 172002313 C T DNM3 Silent p.L253L 0.38 TCGA-AZ-4615-01 1 173725142 173725142 G A KLHL20 Missense_Mutation p.R311Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-AZ-4615-01 1 176811561 176811561 C T PAPPA2 Missense_Mutation p.R1783W 0.54 deleterious(0) probably_damaging(0.964) TCGA-AZ-4615-01 1 177927333 177927333 G - SEC16B Frame_Shift_Del p.S434Vfs*29 0.24 TCGA-AZ-4615-01 1 178412041 178412041 A - RASAL2 Frame_Shift_Del p.K389Rfs*7 0.33 TCGA-AZ-4615-01 1 178834664 178834664 A G ANGPTL1 Missense_Mutation p.M83T 0.42 tolerated(0.7) benign(0.017) TCGA-AZ-4615-01 1 179638326 179638326 C A TDRD5 Intron 0.24 TCGA-AZ-4615-01 1 186158669 186158669 A G HMCN1 Missense_Mutation p.N5523D 0.24 probably_damaging(0.931) TCGA-AZ-4615-01 1 186648488 186648488 G T PTGS2 Silent p.T45T 0.33 TCGA-AZ-4615-01 1 19166141 19166141 G A TAS1R2 Silent p.P824P 0.07 TCGA-AZ-4615-01 1 19411157 19411157 C T UBR4 Missense_Mutation p.R4950Q 0.32 probably_damaging(0.968) TCGA-AZ-4615-01 1 19484345 19484345 G A UBR4 Silent p.R1908R 0.42 TCGA-AZ-4615-01 1 19632582 19632582 G A AKR7A2 Missense_Mutation p.A283V 0.31 tolerated(0.44) benign(0.005) TCGA-AZ-4615-01 1 196762682 196762682 T - CFHR3 3'UTR 0.23 TCGA-AZ-4615-01 1 197876387 197876387 T - C1orf53 3'UTR 0.23 TCGA-AZ-4615-01 1 199996916 199996916 T - NR5A2 5'UTR 0.24 TCGA-AZ-4615-01 1 202724567 202724567 C T KDM5B Missense_Mutation p.S457N 0.39 deleterious(0) benign(0.093) TCGA-AZ-4615-01 1 202850065 202850065 G T RABIF 3'UTR 0.54 TCGA-AZ-4615-01 1 203472742 203472742 G A OPTC Missense_Mutation p.R298H 0.18 deleterious(0) probably_damaging(0.969) TCGA-AZ-4615-01 1 203734727 203734728 AG - LAX1 Frame_Shift_Del p.G13Efs*19 0.29 TCGA-AZ-4615-01 1 203821349 203821349 T C ZC3H11A Missense_Mutation p.M752T 0.40 tolerated(1) benign(0) TCGA-AZ-4615-01 1 204948679 204948679 G A NFASC Missense_Mutation p.S723N 0.47 tolerated(0.83) benign(0.066) TCGA-AZ-4615-01 1 204966331 204966331 C T NFASC Missense_Mutation p.A939V 0.41 tolerated(0.51) unknown(0) TCGA-AZ-4615-01 1 205031071 205031071 C G CNTN2 Missense_Mutation p.A351G 0.40 deleterious(0.01) benign(0.003) TCGA-AZ-4615-01 1 205308930 205308930 C T KLHDC8A Missense_Mutation p.R128Q 0.50 tolerated(0.17) benign(0.029) TCGA-AZ-4615-01 1 207782651 207782651 A G CR1 Silent p.P1971P 0.25 TCGA-AZ-4615-01 1 211534503 211534503 C T TRAF5 Missense_Mutation p.T232M 0.32 tolerated(0.09) benign(0.002) TCGA-AZ-4615-01 1 21167468 21167468 A - EIF4G3 Frame_Shift_Del p.F1264Lfs*2 0.25 TCGA-AZ-4615-01 1 213290697 213290697 T G RPS6KC1 Silent p.P139P 0.31 TCGA-AZ-4615-01 1 215256673 215256673 A - KCNK2 5'UTR 0.32 TCGA-AZ-4615-01 1 220964945 220964945 T G MARC1 Missense_Mutation p.Y130D 0.38 tolerated(0.38) benign(0.002) TCGA-AZ-4615-01 1 22173848 22173848 G A HSPG2 Silent p.S2721S 0.31 TCGA-AZ-4615-01 1 222713432 222713432 A - HHIPL2 Frame_Shift_Del p.L457* 0.31 TCGA-AZ-4615-01 1 224321829 224321829 C T FBXO28 Missense_Mutation p.A144V 0.33 deleterious(0.02) possibly_damaging(0.778) TCGA-AZ-4615-01 1 226567647 226567647 T - PARP1 Frame_Shift_Del p.S507Afs*17 0.26 TCGA-AZ-4615-01 1 228284826 228284826 T G ARF1 Missense_Mutation p.I4S 0.44 tolerated_low_confidence(0.59) benign(0.005) TCGA-AZ-4615-01 1 22924220 22924220 A G EPHA8 Missense_Mutation p.D661G 0.27 deleterious(0) possibly_damaging(0.826) TCGA-AZ-4615-01 1 229462504 229462504 G A CCSAP Missense_Mutation p.A206V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4615-01 1 229730799 229730799 G A TAF5L Missense_Mutation p.R339W 0.36 deleterious(0.04) probably_damaging(0.994) TCGA-AZ-4615-01 1 229730816 229730816 G A TAF5L Missense_Mutation p.T333M 0.30 deleterious(0.02) possibly_damaging(0.738) TCGA-AZ-4615-01 1 235498604 235498604 C T GGPS1 Nonsense_Mutation p.Q9* 0.46 TCGA-AZ-4615-01 1 240070784 240070784 T A CHRM3 Silent p.P11P 0.34 TCGA-AZ-4615-01 1 24483623 24483623 C - IFNLR1 Frame_Shift_Del p.R520Sfs*55 0.35 TCGA-AZ-4615-01 1 248367025 248367025 C T OR2M3 Missense_Mutation p.A219V 0.32 tolerated(0.13) benign(0.03) TCGA-AZ-4615-01 1 25687244 25687244 T - TMEM50A 3'UTR 0.29 TCGA-AZ-4615-01 1 26360245 26360245 C T EXTL1 Missense_Mutation p.T526M 0.32 tolerated(0.06) probably_damaging(0.99) TCGA-AZ-4615-01 1 26609016 26609016 G T UBXN11 Missense_Mutation p.P446H 0.41 tolerated(0.2) probably_damaging(0.935) TCGA-AZ-4615-01 1 26669375 26669375 C T AIM1L Splice_Site p.X151_splice 0.30 TCGA-AZ-4615-01 1 27106731 27106731 G A ARID1A Silent p.P2114P 0.30 TCGA-AZ-4615-01 1 28800264 28800264 G A PHACTR4 Missense_Mutation p.R351H 0.30 tolerated(0.07) benign(0.234) TCGA-AZ-4615-01 1 28800272 28800273 - C PHACTR4 Frame_Shift_Ins p.L357Tfs*18 0.33 TCGA-AZ-4615-01 1 31406119 31406119 T C PUM1 Missense_Mutation p.Y1169C 0.22 deleterious(0) benign(0.098) TCGA-AZ-4615-01 1 33745981 33745981 G - ZNF362 Frame_Shift_Del p.G204Vfs*6 0.37 TCGA-AZ-4615-01 1 36889004 36889004 C A OSCP1 Missense_Mutation p.G194W 0.43 deleterious(0) probably_damaging(0.975) TCGA-AZ-4615-01 1 36921847 36921847 G A MRPS15 Missense_Mutation p.P193S 0.25 deleterious(0.03) benign(0.197) TCGA-AZ-4615-01 1 36938207 36938207 A G CSF3R Missense_Mutation p.C252R 0.35 tolerated(0.63) benign(0) TCGA-AZ-4615-01 1 3764058 3764058 T C CEP104 Missense_Mutation p.K136R 0.33 tolerated(0.46) benign(0.024) TCGA-AZ-4615-01 1 38280846 38280846 C T MTF1 Missense_Mutation p.E742K 0.36 tolerated_low_confidence(0.17) probably_damaging(0.971) TCGA-AZ-4615-01 1 38351448 38351448 A G INPP5B Missense_Mutation p.I394T 0.33 deleterious(0) probably_damaging(0.948) TCGA-AZ-4615-01 1 38411938 38411938 C - INPP5B Frame_Shift_Del p.E15Nfs*58 0.33 TCGA-AZ-4615-01 1 39799993 39799993 A G MACF1 Intron 0.39 TCGA-AZ-4615-01 1 39878804 39878804 C T KIAA0754 Missense_Mutation p.A820V 0.24 unknown(0) TCGA-AZ-4615-01 1 39924085 39924085 G A MACF1 Missense_Mutation p.R4981Q 0.37 possibly_damaging(0.886) TCGA-AZ-4615-01 1 40366545 40366545 G A MYCL Intron 0.33 TCGA-AZ-4615-01 1 40702552 40702552 T - RLF Frame_Shift_Del p.H728Tfs*20 0.27 TCGA-AZ-4615-01 1 40747157 40747157 T C ZMPSTE24 Silent p.N304N 0.42 TCGA-AZ-4615-01 1 43638071 43638071 C T EBNA1BP2 Missense_Mutation p.V8I 0.29 benign(0) TCGA-AZ-4615-01 1 44054532 44054532 G T PTPRF Missense_Mutation p.E270D 0.19 tolerated(0.14) benign(0.038) TCGA-AZ-4615-01 1 46489645 46489645 C T MAST2 Silent p.Y591Y 0.46 TCGA-AZ-4615-01 1 46495176 46495176 C T MAST2 Missense_Mutation p.P753S 0.40 tolerated_low_confidence(0.07) benign(0.038) TCGA-AZ-4615-01 1 46650473 46650473 C T TSPAN1 Missense_Mutation p.T119M 0.31 tolerated(0.09) benign(0.105) TCGA-AZ-4615-01 1 46662690 46662690 G A POMGNT1 Nonsense_Mutation p.R63* 0.10 TCGA-AZ-4615-01 1 46745269 46745271 AGA - LRRC41 In_Frame_Del p.F679del 0.25 TCGA-AZ-4615-01 1 53236881 53236881 G A ZYG11B Missense_Mutation p.G129D 0.39 tolerated(0.3) benign(0.369) TCGA-AZ-4615-01 1 53279537 53279537 A G ZYG11B Silent p.S633S 0.37 TCGA-AZ-4615-01 1 54693973 54693973 G A SSBP3 Silent p.D364D 0.43 TCGA-AZ-4615-01 1 61543223 61543223 A - NFIA 5'Flank 0.53 TCGA-AZ-4615-01 1 62594569 62594569 G A INADL Silent p.A1741A 0.39 TCGA-AZ-4615-01 1 70504693 70504693 A - LRRC7 Frame_Shift_Del p.V1027Sfs*16 0.23 TCGA-AZ-4615-01 1 70697744 70697744 A - SRSF11 Intron 0.26 TCGA-AZ-4615-01 1 74648381 74648381 T - LRRIQ3 Frame_Shift_Del p.G139Dfs*20 0.25 TCGA-AZ-4615-01 1 74957853 74957853 C T TNNI3K Missense_Mutation p.R853W 0.48 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-AZ-4615-01 1 75622712 75622712 C T LHX8 Silent p.Y315Y 0.37 TCGA-AZ-4615-01 1 78401649 78401649 A - NEXN Frame_Shift_Del p.I467* 0.26 TCGA-AZ-4615-01 1 78408830 78408830 G - NEXN 3'UTR 0.59 TCGA-AZ-4615-01 1 84946648 84946648 G A RPF1 Missense_Mutation p.A80T 0.35 tolerated(0.22) benign(0.108) TCGA-AZ-4615-01 1 85648793 85648793 G T SYDE2 Nonsense_Mutation p.S511* 0.32 TCGA-AZ-4615-01 1 86965770 86965770 T - CLCA1 3'UTR 0.59 TCGA-AZ-4615-01 1 92446371 92446374 AAGT - BRDT Splice_Site p.X487_splice 0.31 TCGA-AZ-4615-01 1 94342201 94342201 C T DNTTIP2 Silent p.A430A 0.36 TCGA-AZ-4615-01 20 10273541 10273541 C T SNAP25 Intron 0.37 TCGA-AZ-4615-01 20 1146762 1146762 G T PSMF1 3'UTR 0.19 TCGA-AZ-4615-01 20 13830103 13830103 G A SEL1L2 3'UTR 0.33 TCGA-AZ-4615-01 20 20506952 20506952 A G RALGAPA2 Missense_Mutation p.S1213P 0.38 deleterious(0.04) possibly_damaging(0.65) TCGA-AZ-4615-01 20 2384226 2384226 G T TGM6 Splice_Site p.X365_splice 0.33 TCGA-AZ-4615-01 20 29631554 29631554 A - FRG1B Frame_Shift_Del p.E119Kfs*16 0.20 TCGA-AZ-4615-01 20 3218356 3218356 G A SLC4A11 Intron 0.42 TCGA-AZ-4615-01 20 34807716 34807716 G A EPB41L1 Missense_Mutation p.G797S 0.41 tolerated(0.59) benign(0.028) TCGA-AZ-4615-01 20 34828452 34828452 C T AAR2 Missense_Mutation p.T221M 0.49 deleterious(0) probably_damaging(0.913) TCGA-AZ-4615-01 20 35399296 35399296 G T DSN1 Missense_Mutation p.P112H 0.27 deleterious(0) probably_damaging(0.993) TCGA-AZ-4615-01 20 36642163 36642164 AC - TTI1 Frame_Shift_Del p.V19Sfs*23 0.22 TCGA-AZ-4615-01 20 3759915 3759915 C T SPEF1 Silent p.L102L 0.44 TCGA-AZ-4615-01 20 39798893 39798893 A T PLCG1 Missense_Mutation p.Q931L 0.36 tolerated(0.21) benign(0.012) TCGA-AZ-4615-01 20 42815184 42815184 C T JPH2 Nonsense_Mutation p.W54* 0.41 TCGA-AZ-4615-01 20 42907988 42907988 G A GDAP1L1 3'UTR 0.41 TCGA-AZ-4615-01 20 43257736 43257736 G C ADA Missense_Mutation p.T57S 0.26 tolerated(1) benign(0) TCGA-AZ-4615-01 20 44505913 44505913 T C ZSWIM3 Missense_Mutation p.V239A 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-AZ-4615-01 20 44506110 44506110 C A ZSWIM3 Missense_Mutation p.L305I 0.36 deleterious(0) probably_damaging(0.998) TCGA-AZ-4615-01 20 44513006 44513006 T C ZSWIM1 3'UTR 0.08 TCGA-AZ-4615-01 20 44638631 44638631 G A MMP9 Missense_Mutation p.A89T 0.33 tolerated(0.89) benign(0.001) TCGA-AZ-4615-01 20 45867581 45867581 C A ZMYND8 Intron 0.32 TCGA-AZ-4615-01 20 45867582 45867582 T C ZMYND8 Intron 0.32 TCGA-AZ-4615-01 20 47770573 47770573 A G STAU1 Missense_Mutation p.C81R 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 20 52675232 52675233 - G BCAS1 Frame_Shift_Ins p.Q9Pfs*4 0.24 TCGA-AZ-4615-01 20 57088870 57088870 T C APCDD1L Intron 0.26 TCGA-AZ-4615-01 20 58519620 58519620 C - FAM217B Frame_Shift_Del p.T210Lfs*9 0.20 TCGA-AZ-4615-01 20 58520340 58520340 C A FAM217B 3'UTR 0.08 TCGA-AZ-4615-01 20 58520529 58520529 A G FAM217B 3'UTR 0.29 TCGA-AZ-4615-01 20 60854258 60854258 C - OSBPL2 Frame_Shift_Del p.I182Sfs*68 0.38 TCGA-AZ-4615-01 21 22849667 22849667 T C NCAM2 Missense_Mutation p.I651T 0.37 deleterious(0.03) probably_damaging(0.968) TCGA-AZ-4615-01 21 28327086 28327086 G A ADAMTS5 Silent p.H403H 0.28 TCGA-AZ-4615-01 21 30693737 30693737 C A BACH1 Missense_Mutation p.R46S 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 21 31661780 31661780 A - KRTAP25-1 Frame_Shift_Del p.F10Sfs*27 0.36 TCGA-AZ-4615-01 21 31692466 31692466 G A KRTAP26-1 5'UTR 0.31 TCGA-AZ-4615-01 21 33975497 33975497 T - AP000275.65 Frame_Shift_Del p.T214Pfs*40 0.26 TCGA-AZ-4615-01 21 35122566 35122567 - C ITSN1 Frame_Shift_Ins p.L158Pfs*3 0.33 TCGA-AZ-4615-01 21 41505824 41505824 G A DSCAM Silent p.D1173D 0.38 TCGA-AZ-4615-01 21 43414059 43414059 G A ZBTB21 Missense_Mutation p.A49V 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 21 45534547 45534547 A G PWP2 Missense_Mutation p.H123R 0.12 tolerated(0.49) possibly_damaging(0.461) TCGA-AZ-4615-01 21 46066653 46066653 C - KRTAP10-11 Frame_Shift_Del p.C95Afs*213 0.33 TCGA-AZ-4615-01 21 47361644 47361644 C T PCBP3 3'UTR 0.31 TCGA-AZ-4615-01 21 47847546 47847546 C T PCNT Missense_Mutation p.T2444I 0.27 benign(0.049) TCGA-AZ-4615-01 22 17264610 17264610 C A XKR3 Nonsense_Mutation p.E427* 0.70 TCGA-AZ-4615-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.38 TCGA-AZ-4615-01 22 19341580 19341580 G A HIRA Missense_Mutation p.P875S 0.25 tolerated(0.39) benign(0.044) TCGA-AZ-4615-01 22 20078972 20078972 C T DGCR8 Nonsense_Mutation p.R441* 0.43 TCGA-AZ-4615-01 22 21380740 21380740 T C P2RX6 Missense_Mutation p.V387A 0.27 tolerated(0.72) benign(0.004) TCGA-AZ-4615-01 22 21842530 21842530 G - PI4KAP2 RNA 0.23 TCGA-AZ-4615-01 22 22314813 22314813 C T TOP3B Missense_Mutation p.A512T 0.46 deleterious(0) probably_damaging(0.993) TCGA-AZ-4615-01 22 25019812 25019812 G A GGT1 Missense_Mutation p.V317I 0.36 tolerated(0.43) benign(0.08) TCGA-AZ-4615-01 22 30887619 30887619 C T SEC14L4 Missense_Mutation p.R341H 0.38 tolerated(0.09) benign(0.039) TCGA-AZ-4615-01 22 31337528 31337528 G A MORC2 Missense_Mutation p.S177L 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 22 32587234 32587234 G A RFPL2 Missense_Mutation p.A221V 0.36 tolerated(0.06) benign(0.104) TCGA-AZ-4615-01 22 32589205 32589205 A - RFPL2 Intron 0.29 TCGA-AZ-4615-01 22 37538522 37538522 G - IL2RB Frame_Shift_Del p.V79* 0.30 TCGA-AZ-4615-01 22 37708142 37708142 G T CYTH4 Nonsense_Mutation p.E347* 0.27 TCGA-AZ-4615-01 22 37769294 37769294 A G ELFN2 Missense_Mutation p.Y761H 0.33 deleterious(0.04) possibly_damaging(0.533) TCGA-AZ-4615-01 22 39267487 39267487 T C CBX6 Missense_Mutation p.K82E 0.22 deleterious(0.01) benign(0.2) TCGA-AZ-4615-01 22 39497932 39497932 A G APOBEC3H Missense_Mutation p.D143G 0.26 tolerated(0.08) probably_damaging(0.983) TCGA-AZ-4615-01 22 40662887 40662887 C T TNRC6B Missense_Mutation p.R885W 0.32 deleterious(0) probably_damaging(0.959) TCGA-AZ-4615-01 22 40708595 40708595 G A TNRC6B Missense_Mutation p.G1508S 0.38 tolerated(0.41) possibly_damaging(0.507) TCGA-AZ-4615-01 22 42091642 42091642 G A C22orf46 3'UTR 0.34 TCGA-AZ-4615-01 22 42390313 42390313 T C SEPT3 Silent p.C295C 0.40 TCGA-AZ-4615-01 22 45574211 45574211 C T NUP50 Missense_Mutation p.L145F 0.10 tolerated(0.58) benign(0.006) TCGA-AZ-4615-01 22 45785718 45785718 A T SMC1B Silent p.T535T 0.34 TCGA-AZ-4615-01 22 50283039 50283039 A - ZBED4 3'UTR 0.29 TCGA-AZ-4615-01 22 50297991 50297991 G - ALG12 Frame_Shift_Del p.Q386Rfs*75 0.33 TCGA-AZ-4615-01 22 51011415 51011415 C T CPT1B Missense_Mutation p.R414H 0.48 deleterious(0.01) benign(0.098) TCGA-AZ-4615-01 2 101023149 101023149 G A CHST10 5'UTR 0.29 TCGA-AZ-4615-01 2 101031541 101031541 C - CHST10 5'UTR 0.21 TCGA-AZ-4615-01 2 106717418 106717418 C T UXS1 Intron 0.43 TCGA-AZ-4615-01 2 116593760 116593760 A G DPP10 Missense_Mutation p.I664V 0.41 tolerated(0.09) benign(0.003) TCGA-AZ-4615-01 2 11773104 11773104 G T GREB1 Missense_Mutation p.D1636Y 0.26 deleterious(0.04) possibly_damaging(0.837) TCGA-AZ-4615-01 2 119915338 119915338 C T C1QL2 Missense_Mutation p.E170K 0.34 tolerated(0.12) possibly_damaging(0.687) TCGA-AZ-4615-01 2 122285463 122285463 C T CLASP1 Missense_Mutation p.V128I 0.43 tolerated(0.39) benign(0.005) TCGA-AZ-4615-01 2 125672792 125672792 C T CNTNAP5 3'UTR 0.33 TCGA-AZ-4615-01 2 128084360 128084360 G - MAP3K2 Frame_Shift_Del p.P167Qfs*40 0.36 TCGA-AZ-4615-01 2 131356222 131356222 G A CFC1 Silent p.F80F 0.18 TCGA-AZ-4615-01 2 138771398 138771398 G T HNMT Missense_Mutation p.D193Y 0.39 tolerated(0.08) benign(0.016) TCGA-AZ-4615-01 2 139428486 139428486 G T NXPH2 3'UTR 0.31 TCGA-AZ-4615-01 2 143799808 143799808 G A KYNU 3'UTR 0.31 TCGA-AZ-4615-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.77 TCGA-AZ-4615-01 2 154334852 154334852 G A RPRM Silent p.L76L 0.16 TCGA-AZ-4615-01 2 158178064 158178064 C T ERMN Missense_Mutation p.D205N 0.25 tolerated(0.12) possibly_damaging(0.728) TCGA-AZ-4615-01 2 160982953 160982953 G - ITGB6 Frame_Shift_Del p.P607Lfs*45 0.20 TCGA-AZ-4615-01 2 162660986 162660986 A G SLC4A10 Missense_Mutation p.H53R 0.24 tolerated(0.31) probably_damaging(0.989) TCGA-AZ-4615-01 2 162902120 162902120 A G DPP4 Silent p.D96D 0.32 TCGA-AZ-4615-01 2 163039933 163039933 T C FAP Missense_Mutation p.I620M 0.29 deleterious(0.02) probably_damaging(0.961) TCGA-AZ-4615-01 2 166221661 166221661 T C SCN2A Silent p.N1136N 0.42 TCGA-AZ-4615-01 2 166848051 166848051 G A SCN1A Nonsense_Mutation p.R1912* 0.30 TCGA-AZ-4615-01 2 170037982 170037982 G T LRP2 Missense_Mutation p.A3382E 0.45 possibly_damaging(0.904) TCGA-AZ-4615-01 2 172966928 172966928 G T DLX2 Silent p.T113T 0.36 TCGA-AZ-4615-01 2 177193604 177193604 G A MTX2 Silent p.L127L 0.34 TCGA-AZ-4615-01 2 179407448 179407448 G A TTN Missense_Mutation p.T32378I 0.36 TCGA-AZ-4615-01 2 179437752 179437752 T C TTN Silent p.E24369E 0.44 TCGA-AZ-4615-01 2 179449688 179449688 G - TTN Frame_Shift_Del p.G21561Afs*12 0.28 TCGA-AZ-4615-01 2 179456990 179456990 G A TTN Missense_Mutation p.P19881S 0.28 TCGA-AZ-4615-01 2 179499181 179499181 A G TTN Silent p.L14109L 0.36 TCGA-AZ-4615-01 2 179590725 179590725 T - TTN Frame_Shift_Del p.N6775Mfs*74 0.30 TCGA-AZ-4615-01 2 179605584 179605584 C A TTN Nonsense_Mutation p.E4126* 0.33 TCGA-AZ-4615-01 2 179610844 179610844 A G TTN Intron 0.35 TCGA-AZ-4615-01 2 179614502 179614502 C A TTN Intron 0.33 TCGA-AZ-4615-01 2 179640924 179640924 A T TTN Silent p.V1889V 0.29 TCGA-AZ-4615-01 2 18112899 18112899 G A KCNS3 Silent p.S208S 0.32 TCGA-AZ-4615-01 2 187541925 187541925 T C ITGAV Missense_Mutation p.M1018T 0.25 deleterious(0.01) benign(0.216) TCGA-AZ-4615-01 2 190611399 190611399 T - OSGEPL1 3'UTR 0.27 TCGA-AZ-4615-01 2 192194675 192194675 A G MYO1B Missense_Mutation p.D89G 0.42 deleterious(0.02) probably_damaging(0.994) TCGA-AZ-4615-01 2 198267354 198267354 A G SF3B1 Missense_Mutation p.V668A 0.29 deleterious(0) possibly_damaging(0.698) TCGA-AZ-4615-01 2 198324701 198324701 A G COQ10B Silent p.L50L 0.32 TCGA-AZ-4615-01 2 202151290 202151290 A - CASP8 Frame_Shift_Del p.K532Nfs*73 0.25 TCGA-AZ-4615-01 2 202151349 202151350 - T CASP8 3'UTR 0.31 TCGA-AZ-4615-01 2 202547603 202547603 T C MPP4 Missense_Mutation p.N204S 0.26 deleterious(0) probably_damaging(0.996) TCGA-AZ-4615-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.41 TCGA-AZ-4615-01 2 20458035 20458035 T C PUM2 Missense_Mutation p.K818R 0.30 deleterious(0) probably_damaging(0.987) TCGA-AZ-4615-01 2 207176362 207176362 T C ZDBF2 3'UTR 0.09 TCGA-AZ-4615-01 2 207436493 207436493 G A ADAM23 Missense_Mutation p.G537R 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-4615-01 2 210558816 210558817 CA - MAP2 Frame_Shift_Del p.Q642Efs*8 0.14 TCGA-AZ-4615-01 2 210569250 210569250 C T MAP2 Intron 0.29 TCGA-AZ-4615-01 2 210836932 210836934 AAG - UNC80 In_Frame_Del p.E2690del 0.35 TCGA-AZ-4615-01 2 21225140 21225140 C T APOB Missense_Mutation p.R4385H 0.33 benign(0.002) TCGA-AZ-4615-01 2 215278891 215278891 C A VWC2L 5'UTR 0.24 TCGA-AZ-4615-01 2 215645698 215645698 A G BARD1 Silent p.P300P 0.36 TCGA-AZ-4615-01 2 216177272 216177272 T C ATIC Missense_Mutation p.L24P 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 2 216271160 216271160 C T FN1 Silent p.P929P 0.28 TCGA-AZ-4615-01 2 217012834 217012834 G A XRCC5 Missense_Mutation p.R502Q 0.41 tolerated(0.78) benign(0) TCGA-AZ-4615-01 2 219875406 219875406 G T CCDC108 Silent p.I1390I 0.33 TCGA-AZ-4615-01 2 222308273 222308273 G A EPHA4 Nonsense_Mutation p.R610* 0.46 TCGA-AZ-4615-01 2 222320303 222320303 A T EPHA4 Missense_Mutation p.V560E 0.40 deleterious(0.01) benign(0.18) TCGA-AZ-4615-01 2 231264998 231264998 A G SP140L Intron 0.31 TCGA-AZ-4615-01 2 233272387 233272387 C A ALPPL2 Silent p.T128T 0.31 TCGA-AZ-4615-01 2 233697782 233697782 A G GIGYF2 Silent p.Q936Q 0.25 TCGA-AZ-4615-01 2 234775319 234775319 C T MSL3P1 RNA 0.38 TCGA-AZ-4615-01 2 234835247 234835247 G A TRPM8 Missense_Mutation p.R22Q 0.29 tolerated(0.33) benign(0.003) TCGA-AZ-4615-01 2 238249725 238249725 C T COL6A3 Missense_Mutation p.A2612T 0.40 unknown(0) TCGA-AZ-4615-01 2 241463729 241463730 AC - ANKMY1 Frame_Shift_Del p.Y380Lfs*2 0.14 TCGA-AZ-4615-01 2 242396172 242396172 G A FARP2 Silent p.T474T 0.30 TCGA-AZ-4615-01 2 26705283 26705283 C T OTOF Missense_Mutation p.G524R 0.31 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 2 27121510 27121510 C A DPYSL5 Missense_Mutation p.A48D 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4615-01 2 27355580 27355580 G A PREB Missense_Mutation p.R215W 0.24 tolerated(0.19) benign(0.002) TCGA-AZ-4615-01 2 27666007 27666009 CTT - KRTCAP3 In_Frame_Del p.L115del 0.12 TCGA-AZ-4615-01 2 31558776 31558776 A G XDH 3'UTR 0.32 TCGA-AZ-4615-01 2 31570469 31570469 G A XDH Silent p.S1065S 0.33 TCGA-AZ-4615-01 2 32323909 32323909 G A SPAST Missense_Mutation p.V211I 0.34 tolerated(0.3) benign(0.146) TCGA-AZ-4615-01 2 32724658 32724658 A C BIRC6 Missense_Mutation p.K2838T 0.55 probably_damaging(0.957) TCGA-AZ-4615-01 2 32820101 32820101 A - BIRC6 Frame_Shift_Del p.K4503Nfs*11 0.35 TCGA-AZ-4615-01 2 3461430 3461430 C T TRAPPC12 Silent p.G523G 0.42 TCGA-AZ-4615-01 2 37085069 37085069 T C STRN Silent p.A589A 0.36 TCGA-AZ-4615-01 2 37265141 37265141 G A HEATR5B Missense_Mutation p.R1025C 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 2 39053108 39053108 T C DHX57 Silent p.A965A 0.47 TCGA-AZ-4615-01 2 46808103 46808103 A G RHOQ Missense_Mutation p.T167A 0.33 deleterious(0) possibly_damaging(0.64) TCGA-AZ-4615-01 2 47639597 47639597 T C MSH2 Silent p.A230A 0.36 TCGA-AZ-4615-01 2 54101608 54101608 A G PSME4 Silent p.H1656H 0.33 TCGA-AZ-4615-01 2 54482833 54482833 A G TSPYL6 Silent p.P152P 0.32 TCGA-AZ-4615-01 2 56144940 56144940 G C EFEMP1 Missense_Mutation p.A126G 0.46 tolerated(0.34) benign(0.047) TCGA-AZ-4615-01 2 61454310 61454312 TCT - USP34 In_Frame_Del p.E2499del 0.30 TCGA-AZ-4615-01 2 74002135 74002135 A - DUSP11 Frame_Shift_Del p.S119Pfs*18 0.23 TCGA-AZ-4615-01 2 74129898 74129898 A G ACTG2 Intron 0.42 TCGA-AZ-4615-01 2 74720218 74720218 G A TTC31 Missense_Mutation p.R478Q 0.29 tolerated_low_confidence(0.21) benign(0.001) TCGA-AZ-4615-01 2 77748826 77748826 T C LRRTM4 5'UTR 0.31 TCGA-AZ-4615-01 2 84928440 84928441 - A DNAH6 Frame_Shift_Ins p.R2682Kfs*27 0.28 TCGA-AZ-4615-01 2 85549781 85549781 A - TGOLN2 3'UTR 0.26 TCGA-AZ-4615-01 2 85808822 85808822 A G VAMP8 Missense_Mutation p.T96A 0.29 deleterious(0.02) probably_damaging(0.973) TCGA-AZ-4615-01 2 95753232 95753232 C G MRPS5 Missense_Mutation p.R388P 0.24 tolerated(0.11) benign(0.191) TCGA-AZ-4615-01 2 96628125 96628125 T C ANKRD36C Missense_Mutation p.I292M 0.15 deleterious(0.01) benign(0.142) TCGA-AZ-4615-01 2 99763958 99763958 T C C2ORF15 Splice_Site p.X9_splice 0.34 TCGA-AZ-4615-01 3 109046630 109046630 T - DPPA4 3'UTR 0.36 TCGA-AZ-4615-01 3 111632549 111632549 G T PHLDB2 Missense_Mutation p.K573N 0.24 tolerated(0.06) benign(0.254) TCGA-AZ-4615-01 3 111693437 111693437 G T PHLDB2 3'UTR 0.43 TCGA-AZ-4615-01 3 112996994 112996994 A C BOC Missense_Mutation p.Q531P 0.22 deleterious(0.02) probably_damaging(0.974) TCGA-AZ-4615-01 3 113804629 113804629 G A QTRTD1 Missense_Mutation p.G388R 0.33 tolerated(0.22) benign(0.019) TCGA-AZ-4615-01 3 122255886 122255886 G A PARP9 Silent p.D635D 0.32 TCGA-AZ-4615-01 3 122422694 122422694 G A PARP14 Missense_Mutation p.D1063N 0.34 tolerated(1) benign(0.001) TCGA-AZ-4615-01 3 123049816 123049816 G A ADCY5 Silent p.C522C 0.42 TCGA-AZ-4615-01 3 123675726 123675726 T - CCDC14 Intron 0.25 TCGA-AZ-4615-01 3 127395235 127395235 A G ABTB1 Silent p.K147K 0.35 TCGA-AZ-4615-01 3 128181517 128181517 C T DNAJB8 Missense_Mutation p.G191D 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-4615-01 3 128584274 128584274 C T RP11-723O4.9 5'Flank 0.23 TCGA-AZ-4615-01 3 130114005 130114005 A - COL6A5 Frame_Shift_Del p.V1091* 0.27 TCGA-AZ-4615-01 3 132211368 132211368 C A DNAJC13 Missense_Mutation p.P1245Q 0.28 deleterious(0) probably_damaging(0.989) TCGA-AZ-4615-01 3 132213020 132213020 G T DNAJC13 Missense_Mutation p.W1286C 0.46 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 3 132320981 132320982 - T ACKR4 3'UTR 0.32 TCGA-AZ-4615-01 3 133941285 133941285 A C RYK Missense_Mutation p.F109V 0.34 deleterious(0) possibly_damaging(0.843) TCGA-AZ-4615-01 3 134338003 134338003 C T KY Missense_Mutation p.E233K 0.32 tolerated(0.22) benign(0.175) TCGA-AZ-4615-01 3 141640894 141640894 A - ATP1B3 Frame_Shift_Del p.K221Nfs*26 0.27 TCGA-AZ-4615-01 3 142142403 142142403 G A XRN1 Missense_Mutation p.R237W 0.39 deleterious(0) probably_damaging(0.937) TCGA-AZ-4615-01 3 142388307 142388307 G A PLS1 Missense_Mutation p.G49D 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-4615-01 3 14523220 14523220 C T SLC6A6 Silent p.T531T 0.31 TCGA-AZ-4615-01 3 145828190 145828190 T - PLOD2 Frame_Shift_Del p.K128Nfs*23 0.25 TCGA-AZ-4615-01 3 151475130 151475130 A G AADACL2 Silent p.L318L 0.42 TCGA-AZ-4615-01 3 155200264 155200264 G A PLCH1 Missense_Mutation p.P1192L 0.34 tolerated_low_confidence(0.42) benign(0.001) TCGA-AZ-4615-01 3 155393927 155393927 A - PLCH1 5'Flank 0.27 TCGA-AZ-4615-01 3 156254539 156254539 C T KCNAB1 3'UTR 0.38 TCGA-AZ-4615-01 3 157154773 157154773 C A PTX3 Silent p.A17A 0.41 TCGA-AZ-4615-01 3 169381167 169381167 C T MECOM 5'UTR 0.30 TCGA-AZ-4615-01 3 169802469 169802469 A - GPR160 Frame_Shift_Del p.I239Yfs*22 0.24 TCGA-AZ-4615-01 3 170198496 170198496 G A SLC7A14 Silent p.S525S 0.42 TCGA-AZ-4615-01 3 17052051 17052051 T C PLCL2 Missense_Mutation p.F279L 0.37 tolerated(0.08) benign(0.436) TCGA-AZ-4615-01 3 170819285 170819285 G A TNIK Silent p.S848S 0.31 TCGA-AZ-4615-01 3 17208392 17208392 C T TBC1D5 Missense_Mutation p.R676H 0.37 deleterious(0) probably_damaging(0.985) TCGA-AZ-4615-01 3 183667573 183667573 G A ABCC5 Silent p.H1065H 0.35 TCGA-AZ-4615-01 3 183906061 183906061 T C ABCF3 Silent p.I234I 0.11 TCGA-AZ-4615-01 3 191098659 191098659 A - CCDC50 Frame_Shift_Del p.A396Pfs*52 0.28 TCGA-AZ-4615-01 3 193156833 193156833 A G ATP13A4 Silent p.G847G 0.44 TCGA-AZ-4615-01 3 195251638 195251638 G A PPP1R2 Missense_Mutation p.A96V 0.40 tolerated(0.08) benign(0.013) TCGA-AZ-4615-01 3 195515473 195515473 A C MUC4 Missense_Mutation p.L993R 0.11 unknown(0) TCGA-AZ-4615-01 3 195611813 195611813 G A TNK2 Missense_Mutation p.A172V 0.26 tolerated(0.16) benign(0.002) TCGA-AZ-4615-01 3 25805558 25805558 G A NGLY1 Missense_Mutation p.T164M 0.40 tolerated(0.39) benign(0.002) TCGA-AZ-4615-01 3 3084805 3084805 G T CNTN4 Missense_Mutation p.G886C 0.34 deleterious(0) possibly_damaging(0.852) TCGA-AZ-4615-01 3 3085379 3085379 A G CNTN4 Silent p.K934K 0.29 TCGA-AZ-4615-01 3 32927553 32927553 T G TRIM71 Missense_Mutation p.L383R 0.26 deleterious(0) possibly_damaging(0.496) TCGA-AZ-4615-01 3 37512623 37512623 G A ITGA9 Missense_Mutation p.R104Q 0.32 tolerated(0.28) probably_damaging(0.97) TCGA-AZ-4615-01 3 38149212 38149212 A G DLEC1 Missense_Mutation p.Q1001R 0.26 tolerated(0.98) benign(0.002) TCGA-AZ-4615-01 3 38158012 38158012 T - DLEC1 Frame_Shift_Del p.Y1310Mfs*121 0.37 TCGA-AZ-4615-01 3 38167150 38167150 G - ACAA1 Frame_Shift_Del p.L369Wfs*7 0.26 TCGA-AZ-4615-01 3 38603944 38603944 G T SCN5A Missense_Mutation p.R1309S 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4615-01 3 38739725 38739725 G A SCN10A Silent p.G1662G 0.37 TCGA-AZ-4615-01 3 39144318 39144318 C T GORASP1 Missense_Mutation p.V67M 0.30 deleterious(0.04) probably_damaging(0.965) TCGA-AZ-4615-01 3 44684952 44684952 T C ZNF197 Missense_Mutation p.L777P 0.41 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 3 45943264 45943264 C T CCR9 Silent p.L328L 0.37 TCGA-AZ-4615-01 3 46621297 46621297 C A TDGF1 Missense_Mutation p.P98T 0.30 deleterious(0.02) probably_damaging(0.911) TCGA-AZ-4615-01 3 49168205 49168205 G A LAMB2 Missense_Mutation p.P335L 0.46 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 3 49896971 49896971 G C CAMKV Missense_Mutation p.A429G 0.27 tolerated_low_confidence(0.12) probably_damaging(0.97) TCGA-AZ-4615-01 3 5025416 5025416 G A BHLHE40 3'UTR 0.53 TCGA-AZ-4615-01 3 50681876 50681876 G A MAPKAPK3 Missense_Mutation p.A181T 0.41 tolerated(0.11) benign(0.009) TCGA-AZ-4615-01 3 52651396 52651396 T A PBRM1 Missense_Mutation p.D567V 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 3 52818318 52818318 C T ITIH1 Missense_Mutation p.T411M 0.38 deleterious(0.01) benign(0.378) TCGA-AZ-4615-01 3 54596940 54596940 T - CACNA2D3 Frame_Shift_Del p.F221Lfs*40 0.21 TCGA-AZ-4615-01 3 57233930 57233930 T C HESX1 Missense_Mutation p.Q6R 0.46 tolerated(0.21) benign(0.004) TCGA-AZ-4615-01 3 62467417 62467417 C T CADPS Missense_Mutation p.A1052T 0.31 tolerated(0.2) possibly_damaging(0.483) TCGA-AZ-4615-01 3 65365153 65365153 T G MAGI1 Missense_Mutation p.E926D 0.36 tolerated(0.07) probably_damaging(0.938) TCGA-AZ-4615-01 3 67546277 67546277 C T SUCLG2 Missense_Mutation p.G336D 0.30 deleterious(0) possibly_damaging(0.678) TCGA-AZ-4615-01 3 77657037 77657038 - C ROBO2 Frame_Shift_Ins p.V1095Sfs*22 0.32 TCGA-AZ-4615-01 3 9516245 9516245 A G SETD5 Missense_Mutation p.N1204D 0.22 tolerated(0.17) benign(0.007) TCGA-AZ-4615-01 3 9594033 9594033 T C LHFPL4 Missense_Mutation p.T111A 0.27 tolerated(0.66) benign(0.006) TCGA-AZ-4615-01 3 98188785 98188785 G T OR5K1 Missense_Mutation p.R122L 0.42 deleterious(0) benign(0.41) TCGA-AZ-4615-01 3 98251487 98251487 T - GPR15 Frame_Shift_Del p.F205Lfs*5 0.29 TCGA-AZ-4615-01 4 100756888 100756889 CT - DAPP1 Frame_Shift_Del p.S73Cfs*8 0.21 TCGA-AZ-4615-01 4 101961708 101961708 G A PPP3CA Missense_Mutation p.A391V 0.26 tolerated(0.27) benign(0.271) TCGA-AZ-4615-01 4 104062214 104062214 T - CENPE Frame_Shift_Del p.D1838Mfs*15 0.25 TCGA-AZ-4615-01 4 106157183 106157186 TGTC - TET2 Frame_Shift_Del p.M695Tfs*4 0.34 TCGA-AZ-4615-01 4 107846968 107846968 G A DKK2 Missense_Mutation p.R121C 0.24 tolerated(0.09) probably_damaging(0.998) TCGA-AZ-4615-01 4 110434924 110434924 A G SEC24B Missense_Mutation p.N642S 0.41 deleterious(0) probably_damaging(0.997) TCGA-AZ-4615-01 4 114277508 114277509 - A ANK2 Frame_Shift_Ins p.R2581Efs*5 0.27 TCGA-AZ-4615-01 4 121966942 121966942 T C NDNF Silent p.S17S 0.23 TCGA-AZ-4615-01 4 125593272 125593272 C A ANKRD50 Missense_Mutation p.R387L 0.36 tolerated(0.05) benign(0.176) TCGA-AZ-4615-01 4 13485808 13485808 G - RAB28 5'UTR 0.28 TCGA-AZ-4615-01 4 135121974 135121974 C T PABPC4L Silent p.A125A 0.37 TCGA-AZ-4615-01 4 141489776 141489776 C T UCP1 Silent p.T36T 0.33 TCGA-AZ-4615-01 4 142654098 142654098 A G IL15 3'UTR 0.28 TCGA-AZ-4615-01 4 144918706 144918706 C T GYPB Missense_Mutation p.R86H 0.30 deleterious(0.01) unknown(0) TCGA-AZ-4615-01 4 147628320 147628320 T - TTC29 Frame_Shift_Del p.N473Mfs*35 0.29 TCGA-AZ-4615-01 4 151160983 151160983 T C DCLK2 Silent p.C569C 0.38 TCGA-AZ-4615-01 4 155157307 155157307 C A DCHS2 Missense_Mutation p.D2378Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-AZ-4615-01 4 155528 155528 C A ZNF718 RNA 0.35 TCGA-AZ-4615-01 4 156846972 156846972 G A CTSO 3'UTR 0.27 TCGA-AZ-4615-01 4 15717368 15717368 A - BST1 Frame_Shift_Del p.I219Lfs*25 0.33 TCGA-AZ-4615-01 4 158242724 158242724 C - GRIA2 Frame_Shift_Del p.P286Lfs*14 0.18 TCGA-AZ-4615-01 4 162402181 162402181 T - FSTL5 Frame_Shift_Del p.V534Lfs*5 0.24 TCGA-AZ-4615-01 4 170618379 170618379 T - CLCN3 Frame_Shift_Del p.F354Lfs*4 0.24 TCGA-AZ-4615-01 4 177649045 177649045 C T VEGFC Missense_Mutation p.A147T 0.30 tolerated(0.4) benign(0.005) TCGA-AZ-4615-01 4 184614790 184614790 C A TRAPPC11 Silent p.P762P 0.34 TCGA-AZ-4615-01 4 187177234 187177234 G T KLKB1 Missense_Mutation p.K526N 0.42 deleterious(0.03) possibly_damaging(0.693) TCGA-AZ-4615-01 4 187517875 187517875 G T FAT1 Missense_Mutation p.F4273L 0.28 probably_damaging(0.995) TCGA-AZ-4615-01 4 20598096 20598096 A T SLIT2 Missense_Mutation p.N1127Y 0.34 tolerated(0.5) possibly_damaging(0.719) TCGA-AZ-4615-01 4 2339190 2339190 G - ZFYVE28 Frame_Shift_Del p.R186Gfs*26 0.38 TCGA-AZ-4615-01 4 2698177 2698177 A - FAM193A Frame_Shift_Del p.M833Wfs*23 0.35 TCGA-AZ-4615-01 4 36340754 36340754 T C DTHD1 Silent p.R662R 0.38 TCGA-AZ-4615-01 4 39187403 39187404 - A WDR19 Frame_Shift_Ins p.T24Nfs*12 0.22 TCGA-AZ-4615-01 4 40146250 40146250 A G N4BP2 Splice_Site p.X1659_splice 0.30 TCGA-AZ-4615-01 4 41682066 41682066 A - LIMCH1 Frame_Shift_Del p.K805Rfs*20 0.25 TCGA-AZ-4615-01 4 4317591 4317591 A C ZBTB49 Missense_Mutation p.K505N 0.36 deleterious(0) probably_damaging(0.978) TCGA-AZ-4615-01 4 48604083 48604083 A - FRYL Frame_Shift_Del p.L330* 0.30 TCGA-AZ-4615-01 4 54876128 54876132 AAAAC - CHIC2 3'UTR 0.25 TCGA-AZ-4615-01 4 57220285 57220285 C A AASDH Nonsense_Mutation p.G435* 0.37 TCGA-AZ-4615-01 4 57269256 57269256 C T PPAT Missense_Mutation p.R204H 0.40 deleterious(0.03) probably_damaging(1) TCGA-AZ-4615-01 4 5838495 5838495 C T CRMP1 Silent p.A483A 0.40 TCGA-AZ-4615-01 4 6027989 6027989 A - JAKMIP1 Frame_Shift_Del p.L821Cfs*5 0.23 TCGA-AZ-4615-01 4 68928569 68928569 A G TMPRSS11F Intron 0.32 TCGA-AZ-4615-01 4 69536340 69536340 G T UGT2B15 5'UTR 0.36 TCGA-AZ-4615-01 4 69696347 69696347 G A UGT2B10 Missense_Mutation p.R446K 0.41 tolerated(0.19) benign(0.003) TCGA-AZ-4615-01 4 70079803 70079803 T - UGT2B11 Frame_Shift_Del p.N213Ifs*2 0.30 TCGA-AZ-4615-01 4 70455274 70455274 C T UGT2A1 Missense_Mutation p.R633H 0.28 deleterious(0.04) benign(0.104) TCGA-AZ-4615-01 4 71347010 71347010 A C MUC7 Silent p.S183S 0.40 TCGA-AZ-4615-01 4 73013327 73013327 A - NPFFR2 Frame_Shift_Del p.R458Efs*10 0.21 TCGA-AZ-4615-01 4 73186525 73186525 C T ADAMTS3 Silent p.A336A 0.34 TCGA-AZ-4615-01 4 84230034 84230034 G A HPSE Missense_Mutation p.A352V 0.31 deleterious(0.02) possibly_damaging(0.698) TCGA-AZ-4615-01 4 84516037 84516037 A C AGPAT9 Silent p.R260R 0.39 TCGA-AZ-4615-01 4 84516077 84516077 G A AGPAT9 Missense_Mutation p.R273H 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 4 88732877 88732877 G A IBSP Missense_Mutation p.V257I 0.37 tolerated(0.09) benign(0.131) TCGA-AZ-4615-01 4 89425422 89425422 C T HERC5 Silent p.N874N 0.42 TCGA-AZ-4615-01 4 89577134 89577134 T C HERC3 Silent p.S339S 0.44 TCGA-AZ-4615-01 4 90034209 90034210 - A TIGD2 Frame_Shift_Ins p.L31Tfs*9 0.30 TCGA-AZ-4615-01 4 9785349 9785349 G C DRD5 3'UTR 0.28 TCGA-AZ-4615-01 4 9785421 9785421 G T DRD5 3'UTR 0.20 TCGA-AZ-4615-01 5 109963560 109963560 G A TMEM232 Nonsense_Mutation p.R175* 0.29 TCGA-AZ-4615-01 5 111601943 111601943 C T EPB41L4A Silent p.A140A 0.27 TCGA-AZ-4615-01 5 114951736 114951736 A - TMED7 3'UTR 0.40 TCGA-AZ-4615-01 5 118582888 118582888 A - DMXL1 Frame_Shift_Del p.N3021Mfs*3 0.22 TCGA-AZ-4615-01 5 127520523 127520523 T C SLC12A2 Missense_Mutation p.S1160P 0.38 deleterious(0) probably_damaging(0.993) TCGA-AZ-4615-01 5 127624908 127624908 G T FBN2 Nonsense_Mutation p.S2183* 0.14 TCGA-AZ-4615-01 5 131895043 131895043 T C RAD50 Missense_Mutation p.F66S 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 5 132736486 132736486 G A FSTL4 Missense_Mutation p.A118V 0.40 deleterious(0) probably_damaging(0.948) TCGA-AZ-4615-01 5 133726150 133726150 A G UBE2B 3'UTR 0.43 TCGA-AZ-4615-01 5 13864683 13864683 A G DNAH5 Silent p.I1473I 0.50 TCGA-AZ-4615-01 5 139213305 139213305 T C PSD2 Missense_Mutation p.S430P 0.22 deleterious(0) possibly_damaging(0.553) TCGA-AZ-4615-01 5 140176038 140176038 C T PCDHA2 Missense_Mutation p.R497W 0.39 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-AZ-4615-01 5 140181241 140181241 G A PCDHA3 Silent p.S153S 0.34 TCGA-AZ-4615-01 5 140181885 140181885 T C PCDHA3 Missense_Mutation p.V368A 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-AZ-4615-01 5 140182393 140182393 G A PCDHA3 Silent p.A537A 0.29 TCGA-AZ-4615-01 5 140188125 140188125 C T PCDHA4 Silent p.N451N 0.36 TCGA-AZ-4615-01 5 140256274 140256274 C T PCDHA12 Missense_Mutation p.S406L 0.36 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-AZ-4615-01 5 140263363 140263363 C A PCDHA13 Missense_Mutation p.L504M 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.588) TCGA-AZ-4615-01 5 140502166 140502166 G A PCDHB4 Missense_Mutation p.D196N 0.42 deleterious_low_confidence(0.05) possibly_damaging(0.517) TCGA-AZ-4615-01 5 140553032 140553032 C A PCDHB7 Missense_Mutation p.P206T 0.24 deleterious_low_confidence(0.02) benign(0.031) TCGA-AZ-4615-01 5 140595144 140595144 C T PCDHB13 Silent p.N483N 0.34 TCGA-AZ-4615-01 5 140720131 140720131 G T PCDHGA2 Missense_Mutation p.W531C 0.27 tolerated_low_confidence(0.18) benign(0.155) TCGA-AZ-4615-01 5 140735293 140735293 G A PCDHGA4 Missense_Mutation p.G176S 0.39 tolerated_low_confidence(0.96) benign(0.035) TCGA-AZ-4615-01 5 141052704 141052705 GA - ARAP3 Intron 0.30 TCGA-AZ-4615-01 5 141334794 141334794 G A PCDH12 Missense_Mutation p.P875S 0.26 tolerated(0.24) benign(0.011) TCGA-AZ-4615-01 5 149755431 149755431 G - TCOF1 Frame_Shift_Del p.A618Rfs*10 0.13 TCGA-AZ-4615-01 5 150413227 150413227 G - TNIP1 Frame_Shift_Del p.P574Lfs*41 0.38 TCGA-AZ-4615-01 5 150858948 150858948 G A SLC36A1 Missense_Mutation p.V353I 0.30 deleterious(0.05) possibly_damaging(0.678) TCGA-AZ-4615-01 5 150885146 150885146 A G FAT2 Missense_Mutation p.C4344R 0.33 probably_damaging(0.998) TCGA-AZ-4615-01 5 150943126 150943126 T C FAT2 Missense_Mutation p.R1112G 0.36 benign(0.008) TCGA-AZ-4615-01 5 154395211 154395211 C T KIF4B Missense_Mutation p.R598C 0.33 deleterious(0.02) benign(0.277) TCGA-AZ-4615-01 5 155526 155526 C A PLEKHG4B Missense_Mutation p.L370M 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-4615-01 5 155771507 155771507 G T SGCD Missense_Mutation p.Q4H 0.32 deleterious(0.01) possibly_damaging(0.708) TCGA-AZ-4615-01 5 156566031 156566031 T C MED7 Missense_Mutation p.M138V 0.37 tolerated(0.05) benign(0.206) TCGA-AZ-4615-01 5 156742061 156742061 C T CYFIP2 Missense_Mutation p.R413C 0.23 deleterious(0) probably_damaging(0.996) TCGA-AZ-4615-01 5 159519625 159519625 C T PWWP2A Missense_Mutation p.V678M 0.36 deleterious(0.02) probably_damaging(1) TCGA-AZ-4615-01 5 161300190 161300190 T C GABRA1 Missense_Mutation p.M108T 0.19 tolerated(0.2) benign(0.001) TCGA-AZ-4615-01 5 169435525 169435525 G A DOCK2 Missense_Mutation p.A1033T 0.32 tolerated(0.07) benign(0.411) TCGA-AZ-4615-01 5 170159886 170159886 A G KCNIP1 Missense_Mutation p.Q184R 0.36 deleterious(0) benign(0.408) TCGA-AZ-4615-01 5 175111540 175111540 G A HRH2 Intron 0.37 TCGA-AZ-4615-01 5 176017146 176017146 C T CDHR2 Missense_Mutation p.R1092W 0.44 deleterious(0) probably_damaging(0.934) TCGA-AZ-4615-01 5 178408728 178408728 T C GRM6 Missense_Mutation p.K855R 0.34 tolerated(0.28) probably_damaging(0.98) TCGA-AZ-4615-01 5 179998326 179998326 A G CNOT6 Missense_Mutation p.H452R 0.29 tolerated(0.17) benign(0.001) TCGA-AZ-4615-01 5 180166444 180166444 G A OR2Y1 Silent p.V205V 0.32 TCGA-AZ-4615-01 5 180166827 180166827 C T OR2Y1 Missense_Mutation p.V78M 0.35 deleterious(0.01) possibly_damaging(0.484) TCGA-AZ-4615-01 5 2749548 2749548 G A IRX2 Silent p.D201D 0.31 TCGA-AZ-4615-01 5 32230385 32230385 T C MTMR12 Silent p.E581E 0.34 TCGA-AZ-4615-01 5 33937261 33937261 C T RXFP3 Missense_Mutation p.A139V 0.09 deleterious(0) probably_damaging(0.981) TCGA-AZ-4615-01 5 33963985 33963985 A G SLC45A2 Silent p.H233H 0.23 TCGA-AZ-4615-01 5 37170296 37170296 A G C5orf42 Silent p.C2103C 0.43 TCGA-AZ-4615-01 5 37381776 37381776 G A WDR70 Missense_Mutation p.R55H 0.09 deleterious(0.01) possibly_damaging(0.563) TCGA-AZ-4615-01 5 37392111 37392111 A - WDR70 Frame_Shift_Del p.E64Rfs*4 0.21 TCGA-AZ-4615-01 5 37752593 37752593 A G WDR70 Missense_Mutation p.Q628R 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 5 38407202 38407202 G A EGFLAM Silent p.S367S 0.39 TCGA-AZ-4615-01 5 38923329 38923329 A - OSMR Frame_Shift_Del p.T617Qfs*20 0.25 TCGA-AZ-4615-01 5 44811198 44811198 G A MRPS30 Missense_Mutation p.R230Q 0.34 deleterious(0) probably_damaging(0.997) TCGA-AZ-4615-01 5 453580 453580 G A EXOC3 Missense_Mutation p.G154R 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-AZ-4615-01 5 5239281 5239281 T G ADAMTS16 Missense_Mutation p.N724K 0.37 tolerated(0.07) benign(0.007) TCGA-AZ-4615-01 5 54720777 54720777 T - SKIV2L2 3'UTR 0.41 TCGA-AZ-4615-01 5 55407454 55407454 T C ANKRD55 Missense_Mutation p.D374G 0.29 tolerated_low_confidence(0.07) benign(0.001) TCGA-AZ-4615-01 5 57750470 57750470 T C PLK2 Silent p.S666S 0.34 TCGA-AZ-4615-01 5 60822215 60822215 A - ZSWIM6 Frame_Shift_Del p.E613Sfs*7 0.29 TCGA-AZ-4615-01 5 64079759 64079759 C T CWC27 Silent p.L117L 0.33 TCGA-AZ-4615-01 5 64920851 64920851 A G CTC-534A2.2 5'UTR 0.27 TCGA-AZ-4615-01 5 68737483 68737483 G A MARVELD2 3'UTR 0.36 TCGA-AZ-4615-01 5 71494872 71494872 G A MAP1B Missense_Mutation p.R1897Q 0.23 benign(0.121) TCGA-AZ-4615-01 5 75505614 75505614 G A SV2C Missense_Mutation p.R272Q 0.20 tolerated(0.35) possibly_damaging(0.774) TCGA-AZ-4615-01 5 76349813 76349813 C T AGGF1 Silent p.Y497Y 0.43 TCGA-AZ-4615-01 5 82789698 82789698 C A VCAN Missense_Mutation p.F232L 0.35 tolerated(0.07) benign(0.02) TCGA-AZ-4615-01 5 82832816 82832816 T - VCAN Intron 0.27 TCGA-AZ-4615-01 5 85578340 85578340 G A NBPF22P RNA 0.33 TCGA-AZ-4615-01 5 95119611 95119611 A G RHOBTB3 Missense_Mutation p.S523G 0.30 deleterious(0.01) benign(0.012) TCGA-AZ-4615-01 6 105219258 105219258 G T HACE1 Missense_Mutation p.P674H 0.30 deleterious(0) probably_damaging(0.995) TCGA-AZ-4615-01 6 105726168 105726168 G A PREP Missense_Mutation p.R662C 0.31 tolerated(0.06) benign(0.002) TCGA-AZ-4615-01 6 106975259 106975260 TG - AIM1 Frame_Shift_Del p.W1090Gfs*15 0.27 TCGA-AZ-4615-01 6 108041887 108041887 T C SCML4 Intron 0.39 TCGA-AZ-4615-01 6 110423329 110423329 T A WASF1 Silent p.P328P 0.43 TCGA-AZ-4615-01 6 110531951 110531952 - A CDC40 Frame_Shift_Ins p.G227Rfs*18 0.28 TCGA-AZ-4615-01 6 110536498 110536498 G T CDC40 Missense_Mutation p.V318F 0.33 deleterious(0.03) possibly_damaging(0.635) TCGA-AZ-4615-01 6 11185383 11185383 T - NEDD9 3'UTR 0.26 TCGA-AZ-4615-01 6 111983068 111983068 A G FYN Silent p.H496H 0.49 TCGA-AZ-4615-01 6 11213839 11213839 A G NEDD9 Missense_Mutation p.L45P 0.43 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 6 12125943 12125943 C T HIVEP1 Missense_Mutation p.A1972V 0.37 tolerated(0.06) benign(0.017) TCGA-AZ-4615-01 6 124979671 124979671 G T NKAIN2 Intron 0.38 TCGA-AZ-4615-01 6 127609365 127609365 A G RNF146 3'UTR 0.38 TCGA-AZ-4615-01 6 128311915 128311915 C A PTPRK Missense_Mutation p.R1038M 0.37 deleterious(0) benign(0.266) TCGA-AZ-4615-01 6 130476132 130476132 A G SAMD3 Silent p.H287H 0.31 TCGA-AZ-4615-01 6 130536484 130536484 T A SAMD3 Intron 0.35 TCGA-AZ-4615-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.70 TCGA-AZ-4615-01 6 133032853 133032853 A G VNN1 Silent p.R112R 0.32 TCGA-AZ-4615-01 6 134491490 134491490 G A SGK1 Silent p.S499S 0.40 TCGA-AZ-4615-01 6 134491539 134491539 T C SGK1 Missense_Mutation p.E483G 0.39 deleterious(0.01) possibly_damaging(0.844) TCGA-AZ-4615-01 6 136472339 136472339 C T PDE7B Missense_Mutation p.H142Y 0.40 tolerated(0.76) benign(0.006) TCGA-AZ-4615-01 6 144081696 144081696 A - PHACTR2 Frame_Shift_Del p.N207Ifs*80 0.33 TCGA-AZ-4615-01 6 146965911 146965911 T - ADGB Frame_Shift_Del p.F82Lfs*14 0.27 TCGA-AZ-4615-01 6 147124863 147124863 C T ADGB Intron 0.45 TCGA-AZ-4615-01 6 149721949 149721950 - C SUMO4 3'UTR 0.19 TCGA-AZ-4615-01 6 150004085 150004085 A G LATS1 Intron 0.30 TCGA-AZ-4615-01 6 150238128 150238128 A G RAET1G Silent p.L309L 0.26 TCGA-AZ-4615-01 6 151674560 151674560 T A AKAP12 Missense_Mutation p.D1678E 0.38 tolerated(0.15) benign(0.016) TCGA-AZ-4615-01 6 152646289 152646289 C T SYNE1 Missense_Mutation p.R5196Q 0.28 benign(0.2) TCGA-AZ-4615-01 6 160169553 160169553 G T WTAP Intron 0.11 TCGA-AZ-4615-01 6 160480091 160480091 T G IGF2R Missense_Mutation p.F1018V 0.27 tolerated(0.14) benign(0.044) TCGA-AZ-4615-01 6 160514768 160514768 C T IGF2R Intron 0.50 TCGA-AZ-4615-01 6 161135926 161135926 T G PLG Silent p.A216A 0.48 TCGA-AZ-4615-01 6 161519332 161519332 G A MAP3K4 Missense_Mutation p.A1183T 0.35 tolerated(0.57) benign(0.002) TCGA-AZ-4615-01 6 163987076 163987076 G - QKI Intron 0.27 TCGA-AZ-4615-01 6 165715107 165715107 T C C6orf118 Missense_Mutation p.D235G 0.37 tolerated(0.06) possibly_damaging(0.467) TCGA-AZ-4615-01 6 167549745 167549745 C T CCR6 Silent p.S9S 0.35 TCGA-AZ-4615-01 6 168325729 168325729 A - MLLT4 Frame_Shift_Del p.K1014Sfs*20 0.23 TCGA-AZ-4615-01 6 170013690 170013690 G A WDR27 Silent p.G762G 0.44 TCGA-AZ-4615-01 6 17800233 17800233 C T KIF13A Missense_Mutation p.V856I 0.28 tolerated(0.52) benign(0.002) TCGA-AZ-4615-01 6 26157161 26157161 A - HIST1H1E Frame_Shift_Del p.K183Rfs*46 0.19 TCGA-AZ-4615-01 6 26370561 26370561 A G BTN3A2 Missense_Mutation p.N149D 0.17 tolerated(1) benign(0) TCGA-AZ-4615-01 6 26423364 26423364 A G BTN2A3P RNA 0.36 TCGA-AZ-4615-01 6 26443857 26443857 T C BTN3A3 Missense_Mutation p.F19L 0.10 tolerated(1) benign(0) TCGA-AZ-4615-01 6 26445952 26445952 A G BTN3A3 Missense_Mutation p.I152V 0.13 tolerated(0.15) benign(0.006) TCGA-AZ-4615-01 6 26445954 26445954 T C BTN3A3 Silent p.I152I 0.13 TCGA-AZ-4615-01 6 28121288 28121288 G A ZKSCAN8 Silent p.Q410Q 0.42 TCGA-AZ-4615-01 6 29577143 29577144 - G GABBR1 Frame_Shift_Ins p.A575Sfs*2 0.38 TCGA-AZ-4615-01 6 29589973 29589973 C T GABBR1 Missense_Mutation p.D325N 0.45 deleterious(0.01) possibly_damaging(0.742) TCGA-AZ-4615-01 6 29641359 29641359 A - ZFP57 Frame_Shift_Del p.C177Afs*25 0.29 TCGA-AZ-4615-01 6 30128239 30128239 G A TRIM10 Missense_Mutation p.R133C 0.18 tolerated(0.06) benign(0.21) TCGA-AZ-4615-01 6 31239374 31239374 A G HLA-C Splice_Site p.X115_splice 0.27 TCGA-AZ-4615-01 6 31239482 31239482 C A HLA-C Missense_Mutation p.E79D 0.29 deleterious_low_confidence(0) benign(0.361) TCGA-AZ-4615-01 6 31323092 31323093 - C HLA-B Splice_Site p.X299_splice 0.24 TCGA-AZ-4615-01 6 31753065 31753065 G A VARS Silent p.G435G 0.42 TCGA-AZ-4615-01 6 32007956 32007956 G A CYP21A2 Missense_Mutation p.V305M 0.39 deleterious(0) possibly_damaging(0.847) TCGA-AZ-4615-01 6 33169558 33169558 T - SLC39A7 Frame_Shift_Del p.F151Lfs*87 0.26 TCGA-AZ-4615-01 6 33260304 33260304 C T RGL2 Silent p.K675K 0.36 TCGA-AZ-4615-01 6 33374036 33374036 C T KIFC1 Missense_Mutation p.R534W 0.34 deleterious(0) probably_damaging(0.995) TCGA-AZ-4615-01 6 345904 345904 G A DUSP22 Missense_Mutation p.R80H 0.22 tolerated(0.39) benign(0.159) TCGA-AZ-4615-01 6 36198305 36198305 G C BRPF3 Silent p.V1179V 0.31 TCGA-AZ-4615-01 6 43013333 43013333 A G CUL7 Missense_Mutation p.C1036R 0.39 deleterious(0) probably_damaging(0.983) TCGA-AZ-4615-01 6 43153885 43153885 C T CUL9 Missense_Mutation p.R315W 0.32 deleterious(0) probably_damaging(0.995) TCGA-AZ-4615-01 6 43526324 43526324 C T XPO5 Missense_Mutation p.G409D 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 6 43604373 43604375 CTT - MAD2L1BP In_Frame_Del p.S134del 0.32 TCGA-AZ-4615-01 6 44143861 44143861 C T CAPN11 Silent p.H296H 0.32 TCGA-AZ-4615-01 6 50682904 50682904 G A TFAP2D Missense_Mutation p.A39T 0.42 deleterious(0.02) possibly_damaging(0.821) TCGA-AZ-4615-01 6 5404936 5404936 T C FARS2 Splice_Site p.X258_splice 0.20 TCGA-AZ-4615-01 6 56470443 56470443 C T DST Intron 0.26 TCGA-AZ-4615-01 6 56471458 56471458 A C DST Intron 0.33 TCGA-AZ-4615-01 6 72960650 72960650 C T RIMS1 Missense_Mutation p.T800I 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-4615-01 6 7880636 7880637 - A BMP6 3'UTR 0.23 TCGA-AZ-4615-01 6 82882133 82882133 A G IBTK Silent p.L1298L 0.46 TCGA-AZ-4615-01 6 83869627 83869627 T - DOPEY1 Frame_Shift_Del p.L2305Wfs*51 0.30 TCGA-AZ-4615-01 6 90415853 90415853 A - MDN1 Frame_Shift_Del p.F2691Lfs*7 0.25 TCGA-AZ-4615-01 6 90504443 90504443 A G MDN1 Missense_Mutation p.V136A 0.29 benign(0.119) TCGA-AZ-4615-01 7 100866778 100866778 C T ZNHIT1 Nonsense_Mutation p.R72* 0.26 TCGA-AZ-4615-01 7 102453823 102453823 T - FBXL13 Frame_Shift_Del p.K725Sfs*39 0.25 TCGA-AZ-4615-01 7 102574961 102574961 A - LRRC17 Frame_Shift_Del p.K202Nfs*5 0.19 TCGA-AZ-4615-01 7 107592471 107592471 C T LAMB1 Missense_Mutation p.G1093R 0.44 tolerated(0.25) benign(0.365) TCGA-AZ-4615-01 7 11415500 11415500 T - THSD7A Frame_Shift_Del p.K1632Sfs*13 0.25 TCGA-AZ-4615-01 7 120629781 120629781 C T CPED1 Nonsense_Mutation p.R36* 0.40 TCGA-AZ-4615-01 7 126173278 126173278 G - GRM8 Frame_Shift_Del p.H720Tfs*12 0.30 TCGA-AZ-4615-01 7 126173897 126173897 C T GRM8 Silent p.A513A 0.31 TCGA-AZ-4615-01 7 128477530 128477530 G A FLNC Missense_Mutation p.A260T 0.17 deleterious(0) benign(0.412) TCGA-AZ-4615-01 7 128607385 128607385 G A TNPO3 Missense_Mutation p.A887V 0.31 tolerated(0.38) benign(0.269) TCGA-AZ-4615-01 7 131831280 131831280 G T PLXNA4 Missense_Mutation p.L1682M 0.30 deleterious(0) probably_damaging(0.992) TCGA-AZ-4615-01 7 131911008 131911008 C T PLXNA4 Missense_Mutation p.V632I 0.40 tolerated(0.51) benign(0) TCGA-AZ-4615-01 7 133160166 133160166 C T EXOC4 Nonsense_Mutation p.R423* 0.33 TCGA-AZ-4615-01 7 134678269 134678269 C - AGBL3 Frame_Shift_Del p.R52Gfs*7 0.26 TCGA-AZ-4615-01 7 134871736 134871736 G A WDR91 Silent p.G689G 0.30 TCGA-AZ-4615-01 7 139724297 139724297 G T PARP12 3'UTR 0.28 TCGA-AZ-4615-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.50 deleterious(0) probably_damaging(0.967) TCGA-AZ-4615-01 7 141672803 141672803 G T TAS2R38 Silent p.V229V 0.36 TCGA-AZ-4615-01 7 148947333 148947333 C T ZNF212 Silent p.T36T 0.40 TCGA-AZ-4615-01 7 150217950 150217950 G A GIMAP7 Silent p.K296K 0.26 TCGA-AZ-4615-01 7 151860821 151860821 T C KMT2C Missense_Mutation p.M3281V 0.30 benign(0.005) TCGA-AZ-4615-01 7 154760608 154760609 - CTG PAXIP1 In_Frame_Ins p.Q434dup 0.28 TCGA-AZ-4615-01 7 158935145 158935145 T - VIPR2 Frame_Shift_Del p.K48Nfs*42 0.24 TCGA-AZ-4615-01 7 21640704 21640704 T C DNAH11 Missense_Mutation p.V1111A 0.28 possibly_damaging(0.72) TCGA-AZ-4615-01 7 23561888 23561888 A - TRA2A Intron 0.31 TCGA-AZ-4615-01 7 23775341 23775341 A - STK31 Frame_Shift_Del p.K225Nfs*35 0.35 TCGA-AZ-4615-01 7 27867366 27867366 A G TAX1BP1 Missense_Mutation p.N699D 0.08 tolerated(0.22) benign(0.027) TCGA-AZ-4615-01 7 38301769 38301769 T C TRGC1 Intron 0.27 TCGA-AZ-4615-01 7 42003930 42003930 A G GLI3 Nonstop_Mutation p.*1581Qext*28 0.27 TCGA-AZ-4615-01 7 42004047 42004047 G A GLI3 Missense_Mutation p.R1542W 0.34 deleterious(0) probably_damaging(0.939) TCGA-AZ-4615-01 7 43548644 43548645 TT - HECW1 Frame_Shift_Del p.F1315* 0.24 TCGA-AZ-4615-01 7 43601487 43601487 A G HECW1 Missense_Mutation p.T1595A 0.30 tolerated(0.07) benign(0.216) TCGA-AZ-4615-01 7 44046875 44046875 C T SPDYE1 Missense_Mutation p.A214V 0.40 deleterious(0.01) possibly_damaging(0.836) TCGA-AZ-4615-01 7 55468928 55468928 G A LANCL2 Missense_Mutation p.R247H 0.34 tolerated(0.09) probably_damaging(0.99) TCGA-AZ-4615-01 7 66274072 66274072 G T KCTD7 Missense_Mutation p.R426M 0.25 deleterious(0.01) benign(0.045) TCGA-AZ-4615-01 7 6838821 6838821 T - CCZ1B 3'UTR 0.28 TCGA-AZ-4615-01 7 69064916 69064916 A G AUTS2 Missense_Mutation p.M93V 0.40 deleterious(0.01) possibly_damaging(0.455) TCGA-AZ-4615-01 7 70853312 70853312 G A WBSCR17 Missense_Mutation p.V172M 0.36 deleterious(0) possibly_damaging(0.904) TCGA-AZ-4615-01 7 72420864 72420864 G T POM121 3'UTR 0.21 TCGA-AZ-4615-01 7 75104016 75104016 C A POM121C 5'UTR 0.35 TCGA-AZ-4615-01 7 8062136 8062136 G T GLCCI1 Missense_Mutation p.E211D 0.38 tolerated(0.16) probably_damaging(0.969) TCGA-AZ-4615-01 7 82546081 82546081 T C PCLO Missense_Mutation p.S3741G 0.38 unknown(0) TCGA-AZ-4615-01 7 83016317 83016317 A G SEMA3E Missense_Mutation p.F573L 0.47 tolerated(0.65) benign(0.001) TCGA-AZ-4615-01 7 83021975 83021975 C T SEMA3E Missense_Mutation p.M521I 0.38 tolerated(0.62) benign(0.025) TCGA-AZ-4615-01 7 87144576 87144576 G A ABCB1 Missense_Mutation p.R1085W 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 7 87165829 87165829 T - ABCB1 Frame_Shift_Del p.N809Tfs*6 0.23 TCGA-AZ-4615-01 7 899932 899932 C A SUN1 Missense_Mutation p.H564Q 0.43 tolerated(0.35) probably_damaging(0.969) TCGA-AZ-4615-01 7 90044463 90044463 T C CLDN12 3'UTR 0.42 TCGA-AZ-4615-01 7 93540213 93540213 G T GNGT1 Missense_Mutation p.G70C 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-4615-01 7 98565141 98565141 G A TRRAP Silent p.A2437A 0.17 TCGA-AZ-4615-01 7 98592355 98592355 A C TRRAP Missense_Mutation p.N3384T 0.39 benign(0.119) TCGA-AZ-4615-01 7 98592365 98592365 C T TRRAP Silent p.N3387N 0.31 TCGA-AZ-4615-01 7 98601869 98601869 A - TRRAP Frame_Shift_Del p.K3443Sfs*19 0.19 TCGA-AZ-4615-01 7 99707631 99707631 G A TAF6 Silent p.D445D 0.26 TCGA-AZ-4615-01 8 101226128 101226128 G A SPAG1 Missense_Mutation p.C506Y 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 8 102644524 102644524 T C GRHL2 Silent p.P472P 0.18 TCGA-AZ-4615-01 8 103238241 103238241 G T RRM2B Missense_Mutation p.P76T 0.25 tolerated_low_confidence(0.63) benign(0.001) TCGA-AZ-4615-01 8 107371723 107371723 A G OXR1 5'UTR 0.26 TCGA-AZ-4615-01 8 113364723 113364723 G A CSMD3 Silent p.S2059S 0.20 TCGA-AZ-4615-01 8 11403603 11403603 C A BLK Missense_Mutation p.L56M 0.37 tolerated(0.12) benign(0.155) TCGA-AZ-4615-01 8 121554135 121554135 T G SNTB1 Missense_Mutation p.Q480P 0.22 deleterious(0.03) possibly_damaging(0.514) TCGA-AZ-4615-01 8 123965871 123965871 C T ZHX2 Silent p.A707A 0.28 TCGA-AZ-4615-01 8 124664849 124664849 G T KLHL38 Silent p.P106P 0.20 TCGA-AZ-4615-01 8 125072758 125072758 G A FER1L6 Intron 0.20 TCGA-AZ-4615-01 8 12878868 12878868 C T KIAA1456 Missense_Mutation p.A227V 0.26 tolerated(0.36) benign(0.086) TCGA-AZ-4615-01 8 133913718 133913718 A G TG Missense_Mutation p.Q1185R 0.28 tolerated(0.1) benign(0.037) TCGA-AZ-4615-01 8 141321377 141321377 G A TRAPPC9 Missense_Mutation p.P629L 0.62 deleterious(0) probably_damaging(0.996) TCGA-AZ-4615-01 8 145726961 145726961 G A PPP1R16A Missense_Mutation p.R421Q 0.26 tolerated(0.29) benign(0.124) TCGA-AZ-4615-01 8 145741460 145741460 T C RECQL4 Missense_Mutation p.H348R 0.38 tolerated(0.45) benign(0.002) TCGA-AZ-4615-01 8 15621743 15621743 G A TUSC3 3'UTR 0.21 TCGA-AZ-4615-01 8 1574965 1574965 C T DLGAP2 Missense_Mutation p.A421V 0.25 tolerated(0.12) benign(0.003) TCGA-AZ-4615-01 8 17228657 17228657 C T MTMR7 Missense_Mutation p.G67R 0.32 deleterious(0.01) probably_damaging(1) TCGA-AZ-4615-01 8 17503568 17503568 T - MTUS1 Frame_Shift_Del p.N1227Tfs*58 0.15 TCGA-AZ-4615-01 8 19709422 19709424 AAG - INTS10 3'UTR 0.26 TCGA-AZ-4615-01 8 2037941 2037941 G A MYOM2 Silent p.V585V 0.26 TCGA-AZ-4615-01 8 22035223 22035223 T C BMP1 Intron 0.37 TCGA-AZ-4615-01 8 22886046 22886049 TTCT - TNFRSF10B Frame_Shift_Del p.K181Nfs*17 0.20 TCGA-AZ-4615-01 8 23059370 23059370 T C TNFRSF10A Missense_Mutation p.T194A 0.23 deleterious(0.01) possibly_damaging(0.683) TCGA-AZ-4615-01 8 23563860 23563860 G A NKX2-6 Silent p.D84D 0.67 TCGA-AZ-4615-01 8 24257686 24257686 A - ADAMDEC1 Frame_Shift_Del p.K341Rfs*7 0.51 TCGA-AZ-4615-01 8 25257424 25257424 T A DOCK5 Intron 0.22 TCGA-AZ-4615-01 8 25890648 25890648 G T EBF2 Missense_Mutation p.S168R 0.23 deleterious(0) possibly_damaging(0.729) TCGA-AZ-4615-01 8 30700633 30700633 T C TEX15 Silent p.A1967A 0.24 TCGA-AZ-4615-01 8 30701749 30701749 C T TEX15 Silent p.A1595A 0.23 TCGA-AZ-4615-01 8 30969171 30969171 T C WRN Missense_Mutation p.I710T 0.26 deleterious(0) probably_damaging(0.969) TCGA-AZ-4615-01 8 38067995 38067995 A - BAG4 Frame_Shift_Del p.G456Dfs*6 0.19 TCGA-AZ-4615-01 8 38287220 38287220 T C FGFR1 Missense_Mutation p.Y146C 0.23 tolerated(0.17) possibly_damaging(0.774) TCGA-AZ-4615-01 8 38809761 38809761 G A PLEKHA2 Silent p.T188T 0.23 TCGA-AZ-4615-01 8 39022632 39022632 G T ADAM32 Missense_Mutation p.E250D 0.27 tolerated(0.27) possibly_damaging(0.663) TCGA-AZ-4615-01 8 39079133 39079133 G A ADAM32 Missense_Mutation p.C413Y 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-4615-01 8 40011590 40011592 GAG - C8orf4 3'UTR 0.25 TCGA-AZ-4615-01 8 42040299 42040300 - T PLAT Frame_Shift_Ins p.V248Gfs*18 0.23 TCGA-AZ-4615-01 8 48883926 48883926 C T MCM4 Missense_Mutation p.A609V 0.37 deleterious(0) probably_damaging(0.992) TCGA-AZ-4615-01 8 52232305 52232305 T C PXDNL 3'UTR 0.22 TCGA-AZ-4615-01 8 61693840 61693840 A - CHD7 Frame_Shift_Del p.D652Tfs*59 0.21 TCGA-AZ-4615-01 8 623985 623986 - T ERICH1 Frame_Shift_Ins p.F123Ifs*2 0.15 TCGA-AZ-4615-01 8 65494649 65494649 G A BHLHE22 3'UTR 0.22 TCGA-AZ-4615-01 8 65528652 65528652 G T CYP7B1 Missense_Mutation p.S149Y 0.33 tolerated(0.72) benign(0.037) TCGA-AZ-4615-01 8 66635840 66635840 T - PDE7A Frame_Shift_Del p.K393Nfs*6 0.30 TCGA-AZ-4615-01 8 67488608 67488608 A G MYBL1 Silent p.D368D 0.19 TCGA-AZ-4615-01 8 67752239 67752239 T - SGK3 Frame_Shift_Del p.F250Sfs*33 0.25 TCGA-AZ-4615-01 8 68942738 68942738 C T PREX2 Silent p.L184L 0.29 TCGA-AZ-4615-01 8 68956777 68956777 C T PREX2 Missense_Mutation p.R299W 0.32 deleterious(0) probably_damaging(0.995) TCGA-AZ-4615-01 8 70617447 70617447 T C SLCO5A1 Missense_Mutation p.S481G 0.31 tolerated(0.84) benign(0.08) TCGA-AZ-4615-01 8 75274214 75274214 G A GDAP1 Splice_Site p.X193_splice 0.26 TCGA-AZ-4615-01 8 80553685 80553685 C A STMN2 Missense_Mutation p.P63H 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-AZ-4615-01 8 82359651 82359651 A G PMP2 5'UTR 0.26 TCGA-AZ-4615-01 8 86114461 86114461 A - E2F5 Frame_Shift_Del p.K107Sfs*11 0.20 TCGA-AZ-4615-01 8 86240860 86240860 C T CA1 Missense_Mutation p.A239T 0.19 tolerated(0.3) benign(0.009) TCGA-AZ-4615-01 8 87424079 87424079 C T WWP1 Missense_Mutation p.A346V 0.21 tolerated(0.4) benign(0.001) TCGA-AZ-4615-01 8 91078177 91078177 T - CALB1 Frame_Shift_Del p.A134Qfs*10 0.22 TCGA-AZ-4615-01 8 95538605 95538605 C T KIAA1429 Missense_Mutation p.E623K 0.30 tolerated(0.06) possibly_damaging(0.641) TCGA-AZ-4615-01 8 95862281 95862282 TG - INTS8 Frame_Shift_Del p.C491Hfs*2 0.16 TCGA-AZ-4615-01 8 97247815 97247815 C A UQCRB 5'Flank 0.35 TCGA-AZ-4615-01 9 101822224 101822224 T G COL15A1 Missense_Mutation p.S1131A 0.40 tolerated(0.17) benign(0.22) TCGA-AZ-4615-01 9 105767570 105767570 A G CYLC2 Silent p.K219K 0.34 TCGA-AZ-4615-01 9 107573187 107573187 A G ABCA1 Missense_Mutation p.F1357L 0.40 deleterious(0) benign(0.079) TCGA-AZ-4615-01 9 111625686 111625686 G - ACTL7A Frame_Shift_Del p.G363Afs*16 0.25 TCGA-AZ-4615-01 9 111727736 111727736 A - CTNNAL1 Frame_Shift_Del p.C505Vfs*15 0.18 TCGA-AZ-4615-01 9 113151814 113151814 T C SVEP1 Silent p.A3292A 0.48 TCGA-AZ-4615-01 9 116151329 116151329 G A ALAD Missense_Mutation p.H287Y 0.36 tolerated(0.99) benign(0.284) TCGA-AZ-4615-01 9 116924994 116924994 G - COL27A1 Splice_Site p.X22_splice 0.22 TCGA-AZ-4615-01 9 123280875 123280875 C T CDK5RAP2 Missense_Mutation p.A381T 0.42 tolerated(0.1) benign(0.002) TCGA-AZ-4615-01 9 123886288 123886288 G A CNTRL Missense_Mutation p.R577H 0.35 benign(0.127) TCGA-AZ-4615-01 9 127230065 127230065 C T GPR144 Silent p.C671C 0.25 TCGA-AZ-4615-01 9 128347923 128347923 G A MAPKAP1 Silent p.T194T 0.31 TCGA-AZ-4615-01 9 129597007 129597007 C T ZBTB43 3'UTR 0.34 TCGA-AZ-4615-01 9 129644645 129644645 G T ZBTB34 3'UTR 0.36 TCGA-AZ-4615-01 9 131495736 131495736 T C ZER1 Missense_Mutation p.T738A 0.32 tolerated(0.4) benign(0.009) TCGA-AZ-4615-01 9 132569641 132569641 A G TOR1B Missense_Mutation p.S214G 0.32 deleterious(0) possibly_damaging(0.635) TCGA-AZ-4615-01 9 132980217 132980217 A G NCS1 Missense_Mutation p.T66A 0.36 tolerated(0.28) benign(0.003) TCGA-AZ-4615-01 9 134145674 134145674 C A FAM78A Intron 0.41 TCGA-AZ-4615-01 9 135537941 135537941 T - DDX31 Frame_Shift_Del p.M178Cfs*42 0.28 TCGA-AZ-4615-01 9 135772894 135772894 A - TSC1 Frame_Shift_Del p.L910Wfs*21 0.24 TCGA-AZ-4615-01 9 135785964 135785964 G - TSC1 Frame_Shift_Del p.R420Gfs*20 0.35 TCGA-AZ-4615-01 9 136901517 136901517 C A BRD3 Intron 0.23 TCGA-AZ-4615-01 9 138393813 138393813 G A MRPS2 Missense_Mutation p.R98Q 0.53 deleterious(0.03) probably_damaging(0.963) TCGA-AZ-4615-01 9 138515842 138515842 G A GLT6D1 3'UTR 0.31 TCGA-AZ-4615-01 9 139116714 139116714 A C QSOX2 Missense_Mutation p.N157K 0.29 tolerated(0.14) possibly_damaging(0.579) TCGA-AZ-4615-01 9 139699274 139699274 C T CCDC183 Intron 0.25 TCGA-AZ-4615-01 9 140671139 140671139 G A EHMT1 Missense_Mutation p.V621I 0.26 tolerated(0.13) benign(0.002) TCGA-AZ-4615-01 9 14769736 14769736 C A FREM1 Silent p.S1730S 0.29 TCGA-AZ-4615-01 9 16435559 16435559 C T BNC2 Missense_Mutation p.R878Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-AZ-4615-01 9 16437136 16437136 C T BNC2 Silent p.L352L 0.37 TCGA-AZ-4615-01 9 19516257 19516257 C T SLC24A2 Missense_Mutation p.R627Q 0.36 deleterious(0) possibly_damaging(0.716) TCGA-AZ-4615-01 9 32571015 32571016 - A NDUFB6 Frame_Shift_Ins p.T73Hfs*20 0.22 TCGA-AZ-4615-01 9 33443141 33443141 T C AQP3 Intron 0.36 TCGA-AZ-4615-01 9 35733022 35733022 G A CREB3 Silent p.L53L 0.31 TCGA-AZ-4615-01 9 4664271 4664271 A G PPAPDC2 3'UTR 0.32 TCGA-AZ-4615-01 9 6328734 6328734 C T TPD52L3 Missense_Mutation p.R47C 0.41 deleterious(0.02) probably_damaging(0.966) TCGA-AZ-4615-01 9 71986511 71986511 C T FAM189A2 Missense_Mutation p.P37S 0.30 tolerated(0.19) probably_damaging(0.98) TCGA-AZ-4615-01 9 77676311 77676311 C A NMRK1 3'UTR 0.27 TCGA-AZ-4615-01 9 77684931 77684932 - T NMRK1 Frame_Shift_Ins p.M66Nfs*25 0.22 TCGA-AZ-4615-01 9 7799499 7799499 G - TMEM261 Frame_Shift_Del p.P79Rfs*59 0.35 TCGA-AZ-4615-01 9 78686728 78686728 G A PCSK5 Missense_Mutation p.A270T 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 9 87285703 87285703 C T NTRK2 Missense_Mutation p.R14W 0.33 tolerated_low_confidence(0.13) benign(0.004) TCGA-AZ-4615-01 9 90500277 90500277 T C SPATA31E1 Missense_Mutation p.V292A 0.22 tolerated(1) benign(0.013) TCGA-AZ-4615-01 9 93375773 93375773 T C DIRAS2 Missense_Mutation p.S113G 0.33 tolerated(0.17) benign(0) TCGA-AZ-4615-01 9 94489002 94489002 C A ROR2 Missense_Mutation p.G403W 0.23 deleterious(0.02) possibly_damaging(0.571) TCGA-AZ-4615-01 9 96428124 96428124 C T PHF2 Silent p.N698N 0.22 TCGA-AZ-4615-01 9 96860646 96860646 C T PTPDC1 Nonsense_Mutation p.R598* 0.38 TCGA-AZ-4615-01 9 98268792 98268793 - T PTCH1 Frame_Shift_Ins p.N97Kfs*43 0.21 TCGA-AZ-4615-01 X 10084476 10084476 A G WWC3 Silent p.K331K 0.67 TCGA-AZ-4615-01 X 10188763 10188763 C - CLCN4 Frame_Shift_Del p.E682Sfs*10 0.44 TCGA-AZ-4615-01 X 101912634 101912636 ACT - GPRASP1 In_Frame_Del p.T1268del 0.58 TCGA-AZ-4615-01 X 102885616 102885617 - A TCEAL1 3'UTR 0.55 TCGA-AZ-4615-01 X 117700116 117700116 A - DOCK11 Frame_Shift_Del p.K283Rfs*4 0.38 TCGA-AZ-4615-01 X 11778613 11778613 C T MSL3 Missense_Mutation p.R93C 0.75 deleterious(0.05) probably_damaging(0.99) TCGA-AZ-4615-01 X 118112410 118112410 G A LONRF3 Missense_Mutation p.R307H 0.60 deleterious(0.01) probably_damaging(0.982) TCGA-AZ-4615-01 X 118752622 118752622 G - SEPT6 3'UTR 0.79 TCGA-AZ-4615-01 X 119293081 119293081 C T RHOXF2 Silent p.G80G 0.68 TCGA-AZ-4615-01 X 140969453 140969453 T C MAGEC3 Silent p.C260C 0.67 TCGA-AZ-4615-01 X 147018134 147018134 T C FMR1 Splice_Site p.X330_splice 0.84 TCGA-AZ-4615-01 X 155010164 155010164 T - SPRY3 3'UTR 0.29 TCGA-AZ-4615-01 X 15845295 15845295 A - AP1S2 3'UTR 0.75 TCGA-AZ-4615-01 X 17653572 17653572 C - NHS Intron 0.71 TCGA-AZ-4615-01 X 18189124 18189124 G A BEND2 Nonsense_Mutation p.R728* 0.72 TCGA-AZ-4615-01 X 18944609 18944609 T C PHKA2 Missense_Mutation p.Q474R 0.76 deleterious(0.03) benign(0.043) TCGA-AZ-4615-01 X 24225443 24225443 T C ZFX Missense_Mutation p.L216S 0.61 deleterious(0.02) possibly_damaging(0.447) TCGA-AZ-4615-01 X 2644348 2644348 G A CD99 Missense_Mutation p.A137T 0.38 tolerated(0.73) possibly_damaging(0.798) TCGA-AZ-4615-01 X 27765461 27765461 G A DCAF8L2 Missense_Mutation p.R150Q 0.69 tolerated(0.54) benign(0.009) TCGA-AZ-4615-01 X 27998926 27998926 C T DCAF8L1 Missense_Mutation p.A176T 0.68 deleterious(0.02) possibly_damaging(0.889) TCGA-AZ-4615-01 X 2825582 2825582 G A ARSD Silent p.S504S 0.86 TCGA-AZ-4615-01 X 2836028 2836028 G A ARSD Missense_Mutation p.A227V 0.41 tolerated(0.11) benign(0.069) TCGA-AZ-4615-01 X 3021800 3021800 T C ARSF Intron 0.62 TCGA-AZ-4615-01 X 30236698 30236698 A G MAGEB2 Translation_Start_Site p.M1? 0.69 deleterious(0.01) probably_damaging(0.978) TCGA-AZ-4615-01 X 39913253 39913253 G - BCOR Frame_Shift_Del p.P1621Qfs*53 0.40 TCGA-AZ-4615-01 X 43626809 43626809 C A MAOB Silent p.V489V 0.95 TCGA-AZ-4615-01 X 47041358 47041358 G A RBM10 Missense_Mutation p.D568N 0.13 deleterious(0) probably_damaging(0.996) TCGA-AZ-4615-01 X 48819729 48819730 - G KCND1 3'UTR 0.43 TCGA-AZ-4615-01 X 53456881 53456881 G A RIBC1 Silent p.A208A 0.82 TCGA-AZ-4615-01 X 5821377 5821377 G T NLGN4X Missense_Mutation p.Q448K 0.74 deleterious(0) probably_damaging(0.952) TCGA-AZ-4615-01 X 64955158 64955158 G A MSN Silent p.R275R 0.60 TCGA-AZ-4615-01 X 69500659 69500659 C T ARR3 Missense_Mutation p.P353S 0.67 deleterious(0) probably_damaging(0.998) TCGA-AZ-4615-01 X 71359899 71359899 G T NHSL2 Missense_Mutation p.R834M 0.74 deleterious(0) probably_damaging(1) TCGA-AZ-4615-01 X 83128017 83128017 A G CYLC1 Missense_Mutation p.R101G 0.70 tolerated(0.06) probably_damaging(0.943) TCGA-AZ-4615-01 X 84258931 84258931 A G APOOL Missense_Mutation p.R5G 0.67 deleterious(0.01) benign(0.076) TCGA-AZ-4615-01 X 85403726 85403727 - C DACH2 Frame_Shift_Ins p.R37Sfs*5 0.58 TCGA-AZ-4615-01 X 86924190 86924190 C T KLHL4 Intron 0.62 TCGA-AZ-4615-01 X 89177098 89177098 C T TGIF2LX Missense_Mutation p.A5V 0.70 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-AZ-4615-01 X 91642760 91642760 G A PCDH11X Silent p.L1057L 0.63 TCGA-AZ-4616-01 10 74310979 74310979 C A MICU1 Missense_Mutation p.D151Y 0.13 deleterious(0) probably_damaging(1) TCGA-AZ-4616-01 10 85981713 85981713 C T LRIT2 Missense_Mutation p.G539E 0.44 tolerated(1) benign(0.002) TCGA-AZ-4616-01 11 11394059 11394059 C T GALNT18 Intron 0.36 TCGA-AZ-4616-01 11 117310621 117310621 G A DSCAML1 Silent p.T1358T 0.23 TCGA-AZ-4616-01 11 129807543 129807543 G C PRDM10 Missense_Mutation p.A330G 0.31 tolerated(0.09) possibly_damaging(0.889) TCGA-AZ-4616-01 11 32461305 32461305 C T WT1 5'Flank 0.41 TCGA-AZ-4616-01 11 77411850 77411850 T G RSF1 Missense_Mutation p.E808D 0.37 tolerated(0.15) benign(0.004) TCGA-AZ-4616-01 12 1943492 1943492 C T LRTM2 Missense_Mutation p.R240W 0.22 deleterious(0) probably_damaging(0.984) TCGA-AZ-4616-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.40 deleterious(0.02) possibly_damaging(0.773) TCGA-AZ-4616-01 12 53452389 53452389 T G TENC1 Missense_Mutation p.F430C 0.38 deleterious(0) possibly_damaging(0.823) TCGA-AZ-4616-01 12 88440656 88440656 C A C12orf29 Nonsense_Mutation p.S231* 0.45 TCGA-AZ-4616-01 12 9262610 9262610 C T A2M Missense_Mutation p.A176T 0.43 tolerated(0.13) benign(0.066) TCGA-AZ-4616-01 13 103266497 103266498 - A TPP2 Frame_Shift_Ins p.N116Kfs*4 0.23 TCGA-AZ-4616-01 13 38154810 38154810 T C POSTN Missense_Mutation p.M473V 0.53 tolerated(0.14) probably_damaging(0.992) TCGA-AZ-4616-01 13 96230277 96230277 G A CLDN10 3'UTR 0.78 TCGA-AZ-4616-01 14 20404533 20404533 T C OR4K1 Silent p.A236A 0.08 TCGA-AZ-4616-01 14 44975547 44975547 C T FSCB Missense_Mutation p.R215K 0.40 tolerated(0.33) benign(0.159) TCGA-AZ-4616-01 14 86093118 86093118 G A FLRT2 3'UTR 0.39 TCGA-AZ-4616-01 15 23890460 23890460 G T MAGEL2 Silent p.A207A 0.29 TCGA-AZ-4616-01 15 25223434 25223434 G A SNRPN Silent p.P218P 0.40 TCGA-AZ-4616-01 15 32460320 32460320 C T CHRNA7 Silent p.R419R 0.12 TCGA-AZ-4616-01 15 35166044 35166044 A G AQR Silent p.N1194N 0.23 TCGA-AZ-4616-01 15 50152431 50152431 G A ATP8B4 Missense_Mutation p.T1180I 0.14 deleterious_low_confidence(0.02) benign(0.046) TCGA-AZ-4616-01 15 70959422 70959422 C T UACA Missense_Mutation p.V1201I 0.12 tolerated(0.44) benign(0.012) TCGA-AZ-4616-01 15 78466811 78466811 G A ACSBG1 Silent p.A586A 0.19 TCGA-AZ-4616-01 15 79082121 79082121 G A ADAMTS7 Missense_Mutation p.A363V 0.21 deleterious(0.01) benign(0.178) TCGA-AZ-4616-01 15 84651871 84651872 - A ADAMTSL3 Frame_Shift_Ins p.N1166Kfs*26 0.22 TCGA-AZ-4616-01 15 89392845 89392845 G A ACAN Missense_Mutation p.V637I 0.62 tolerated(0.07) unknown(0) TCGA-AZ-4616-01 16 31770825 31770825 T C ZNF720 3'UTR 0.17 TCGA-AZ-4616-01 16 460269 460269 G A DECR2 Missense_Mutation p.A122T 0.42 tolerated(0.14) probably_damaging(0.982) TCGA-AZ-4616-01 16 70597891 70597891 G A SF3B3 Missense_Mutation p.E801K 0.21 deleterious(0) probably_damaging(0.945) TCGA-AZ-4616-01 17 36484610 36484610 T G GPR179 Silent p.G1614G 0.45 TCGA-AZ-4616-01 17 38418818 38418818 G T WIPF2 Missense_Mutation p.A80S 0.13 tolerated(0.41) benign(0.048) TCGA-AZ-4616-01 17 55079396 55079396 C T SCPEP1 Missense_Mutation p.R384W 0.45 deleterious(0) possibly_damaging(0.849) TCGA-AZ-4616-01 17 7577561 7577561 A C TP53 Missense_Mutation p.S240R 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-4616-01 18 48593505 48593505 G T SMAD4 Missense_Mutation p.G419V 0.64 deleterious(0) probably_damaging(0.982) TCGA-AZ-4616-01 19 2114252 2114252 C T AP3D1 Missense_Mutation p.E825K 0.38 tolerated(0.23) benign(0.029) TCGA-AZ-4616-01 19 34884209 34884209 C T GPI Silent p.H298H 0.36 TCGA-AZ-4616-01 19 39228965 39228965 G A CAPN12 Missense_Mutation p.P305S 0.17 tolerated(0.1) probably_damaging(0.999) TCGA-AZ-4616-01 19 51330344 51330344 G A KLK15 Missense_Mutation p.R91W 0.38 deleterious(0.03) probably_damaging(0.912) TCGA-AZ-4616-01 1 10357051 10357051 C G KIF1B Missense_Mutation p.P607R 0.21 deleterious(0) probably_damaging(0.998) TCGA-AZ-4616-01 1 115215796 115215796 C T AMPD1 Missense_Mutation p.R761H 0.17 deleterious(0) probably_damaging(0.999) TCGA-AZ-4616-01 1 154316887 154316887 C T ATP8B2 Silent p.I717I 0.33 TCGA-AZ-4616-01 1 15654909 15654909 C T FHAD1 Missense_Mutation p.S170L 0.15 tolerated(0.56) benign(0.013) TCGA-AZ-4616-01 1 165414101 165414101 C T RXRG Silent p.K10K 0.18 TCGA-AZ-4616-01 1 202985241 202985241 C T TMEM183A Silent p.S227S 0.16 TCGA-AZ-4616-01 1 207753898 207753898 G A CR1 Missense_Mutation p.R1719H 0.21 tolerated(0.32) benign(0.174) TCGA-AZ-4616-01 1 210187085 210187085 G A SYT14 Missense_Mutation p.G102R 0.27 deleterious(0.01) possibly_damaging(0.632) TCGA-AZ-4616-01 1 216850581 216850581 G A ESRRG Silent p.D108D 0.27 TCGA-AZ-4616-01 1 227257489 227257489 C T CDC42BPA Missense_Mutation p.D965N 0.41 tolerated(0.06) possibly_damaging(0.679) TCGA-AZ-4616-01 1 24483687 24483687 C A IFNLR1 Missense_Mutation p.W499L 0.20 tolerated(0.07) benign(0.006) TCGA-AZ-4616-01 1 248616804 248616804 C T OR2T2 Missense_Mutation p.R236C 0.23 deleterious(0.02) benign(0.007) TCGA-AZ-4616-01 1 26513938 26513938 C A CNKSR1 Missense_Mutation p.F473L 0.22 deleterious(0) probably_damaging(0.931) TCGA-AZ-4616-01 1 27105658 27105658 G C ARID1A Missense_Mutation p.A1757P 0.31 benign(0) TCGA-AZ-4616-01 1 891302 891302 C A NOC2L Splice_Site p.X233_splice 0.46 TCGA-AZ-4616-01 1 94496628 94496628 C A ABCA4 Missense_Mutation p.V1393F 0.32 deleterious(0.02) benign(0.002) TCGA-AZ-4616-01 20 17505538 17505538 G C BFSP1 Missense_Mutation p.C131W 0.22 deleterious(0) probably_damaging(0.998) TCGA-AZ-4616-01 21 31538298 31538298 G A CLDN17 Missense_Mutation p.T213M 0.18 tolerated(0.11) benign(0) TCGA-AZ-4616-01 22 35481566 35481566 G A ISX Silent p.A206A 0.46 TCGA-AZ-4616-01 2 153484908 153484908 G A FMNL2 Missense_Mutation p.R754Q 0.43 benign(0.417) TCGA-AZ-4616-01 2 15607912 15607912 C T NBAS Missense_Mutation p.E632K 0.16 tolerated(0.17) benign(0.05) TCGA-AZ-4616-01 2 179575471 179575471 G A TTN Silent p.S9451S 0.22 TCGA-AZ-4616-01 2 191301341 191301341 C T MFSD6 Missense_Mutation p.R196C 0.24 deleterious(0.01) benign(0.026) TCGA-AZ-4616-01 2 198641827 198641827 C T BOLL Missense_Mutation p.V90I 0.36 tolerated(0.51) benign(0.009) TCGA-AZ-4616-01 2 206058044 206058044 G C PARD3B Missense_Mutation p.V652L 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-AZ-4616-01 2 212812235 212812235 C T ERBB4 Missense_Mutation p.R114Q 0.36 tolerated(0.14) benign(0.262) TCGA-AZ-4616-01 2 37516542 37516542 G A PRKD3 Missense_Mutation p.P225L 0.25 tolerated(0.42) benign(0.001) TCGA-AZ-4616-01 2 71062643 71062643 C T CD207 Missense_Mutation p.V57I 0.17 tolerated(1) benign(0.001) TCGA-AZ-4616-01 2 98779325 98779325 A G VWA3B Missense_Mutation p.R334G 0.12 deleterious(0) probably_damaging(0.99) TCGA-AZ-4616-01 2 99012411 99012411 G A CNGA3 Missense_Mutation p.D260N 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-4616-01 3 138762828 138762828 C T PRR23C Missense_Mutation p.R212H 0.10 tolerated(0.58) possibly_damaging(0.467) TCGA-AZ-4616-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.43 deleterious(0.02) probably_damaging(0.984) TCGA-AZ-4616-01 3 179593214 179593214 C T PEX5L Missense_Mutation p.R186Q 0.13 tolerated_low_confidence(0.05) benign(0.004) TCGA-AZ-4616-01 3 185769818 185769818 C G ETV5 Splice_Site p.X437_splice 0.45 TCGA-AZ-4616-01 3 52456256 52456256 C T PHF7 Silent p.L233L 0.40 TCGA-AZ-4616-01 3 71050155 71050155 G A FOXP1 Nonsense_Mutation p.Q346* 0.38 TCGA-AZ-4616-01 4 113460732 113460733 - T C4orf21 Frame_Shift_Ins p.E2096Rfs*4 0.21 TCGA-AZ-4616-01 4 155720132 155720132 A G RBM46 Missense_Mutation p.Y273C 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-4616-01 4 183063638 183063638 G A AC108142.1 RNA 0.34 TCGA-AZ-4616-01 4 54266008 54266008 T C FIP1L1 Splice_Site p.X272_splice 0.12 TCGA-AZ-4616-01 4 69093561 69093561 G T TMPRSS11B 3'UTR 0.20 TCGA-AZ-4616-01 4 71555219 71555219 T C UTP3 Silent p.Y275Y 0.10 TCGA-AZ-4616-01 4 71841004 71841004 G A MOB1B Splice_Site p.X142_splice 0.17 TCGA-AZ-4616-01 4 94377047 94377047 C T GRID2 Nonsense_Mutation p.R594* 0.17 TCGA-AZ-4616-01 5 112128185 112128185 C A APC Missense_Mutation p.R230S 0.23 benign(0.078) TCGA-AZ-4616-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.35 TCGA-AZ-4616-01 5 112175944 112175947 AGAG - APC Frame_Shift_Del p.E1552Qfs*12 0.30 TCGA-AZ-4616-01 5 131310658 131310658 C A ACSL6 Silent p.V332V 0.42 TCGA-AZ-4616-01 5 140480998 140480998 C T PCDHB3 Silent p.T255T 0.09 TCGA-AZ-4616-01 5 140559996 140559996 T G PCDHB8 Missense_Mutation p.F794C 0.35 deleterious_low_confidence(0.02) benign(0.012) TCGA-AZ-4616-01 5 140750133 140750133 G A PCDHGB3 Missense_Mutation p.V58M 0.21 deleterious(0.04) benign(0.348) TCGA-AZ-4616-01 5 140753716 140753716 G A PCDHGA6 Silent p.T22T 0.47 TCGA-AZ-4616-01 5 180057643 180057643 G A FLT4 Silent p.N104N 0.37 TCGA-AZ-4616-01 5 45262067 45262067 T A HCN1 Missense_Mutation p.T877S 0.16 tolerated_low_confidence(0.38) benign(0.054) TCGA-AZ-4616-01 5 72286677 72286677 A C FCHO2 Silent p.R161R 0.42 TCGA-AZ-4616-01 5 90020685 90020685 T C GPR98 Missense_Mutation p.F3262S 0.18 benign(0.013) TCGA-AZ-4616-01 6 112020830 112020830 C T FYN Intron 0.40 TCGA-AZ-4616-01 6 163984820 163984820 A T QKI Intron 0.36 TCGA-AZ-4616-01 6 168708002 168708002 G A DACT2 3'UTR 0.33 TCGA-AZ-4616-01 6 32725607 32725607 C T HLA-DQB2 Intron 0.56 TCGA-AZ-4616-01 6 43582152 43582152 A G POLH Missense_Mutation p.H667R 0.11 tolerated(0.38) benign(0.028) TCGA-AZ-4616-01 6 57017043 57017043 C T ZNF451 Missense_Mutation p.P926L 0.44 deleterious(0) probably_damaging(0.999) TCGA-AZ-4616-01 7 101882646 101882646 C T CUX1 Silent p.C1234C 0.25 TCGA-AZ-4616-01 7 121695075 121695075 A C PTPRZ1 Missense_Mutation p.E2154D 0.27 deleterious(0.01) possibly_damaging(0.523) TCGA-AZ-4616-01 7 30693041 30693041 G T CRHR2 3'UTR 0.15 TCGA-AZ-4616-01 7 31123759 31123759 T C ADCYAP1R1 Missense_Mutation p.M111T 0.16 tolerated(0.59) benign(0.003) TCGA-AZ-4616-01 7 45109493 45109493 C T CCM2 Silent p.I247I 0.34 TCGA-AZ-4616-01 7 77797314 77797314 G A MAGI2 Missense_Mutation p.R839C 0.32 deleterious(0) probably_damaging(0.912) TCGA-AZ-4616-01 8 119938850 119938850 C T TNFRSF11B Missense_Mutation p.A234T 0.25 tolerated(0.54) benign(0.01) TCGA-AZ-4616-01 8 133186541 133186541 C T KCNQ3 Missense_Mutation p.R330H 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-4616-01 8 145111053 145111053 T C OPLAH Missense_Mutation p.N698S 0.27 deleterious(0.02) benign(0.058) TCGA-AZ-4616-01 8 32617823 32617823 A G NRG1 Silent p.R394R 0.11 TCGA-AZ-4616-01 8 37728911 37728911 C T RAB11FIP1 Missense_Mutation p.G1137S 0.09 tolerated(0.12) benign(0.359) TCGA-AZ-4616-01 8 51306773 51306773 C T SNTG1 Intron 0.39 TCGA-AZ-4616-01 9 115952825 115952825 G A FKBP15 Missense_Mutation p.R367W 0.17 deleterious(0) probably_damaging(1) TCGA-AZ-4616-01 9 125239855 125239855 T C OR1J1 Silent p.S117S 0.08 TCGA-AZ-4616-01 9 22447157 22447157 G A DMRTA1 Silent p.P31P 0.39 TCGA-AZ-4616-01 9 332451 332451 G A DOCK8 Silent p.T366T 0.15 TCGA-AZ-4616-01 X 102884995 102884995 G C TCEAL1 Missense_Mutation p.E51Q 0.27 tolerated_low_confidence(0.16) benign(0.07) TCGA-AZ-4616-01 X 103080600 103080600 T C RAB9B Missense_Mutation p.T39A 0.10 deleterious(0) probably_damaging(0.998) TCGA-AZ-4616-01 X 106456245 106456245 C A PIH1D3 Missense_Mutation p.S47Y 0.24 tolerated(1) benign(0.006) TCGA-AZ-4616-01 X 11316982 11316982 G A AMELX Silent p.P167P 0.11 TCGA-AZ-4616-01 X 119211011 119211011 C T RHOXF2B Missense_Mutation p.D108N 0.48 tolerated(0.41) benign(0.093) TCGA-AZ-4616-01 X 129205059 129205059 T C ELF4 Silent p.K255K 0.16 TCGA-AZ-4616-01 X 136649343 136649343 C T ZIC3 Silent p.L165L 0.19 TCGA-AZ-4616-01 X 146353902 146353902 G C MIR510 RNA 0.25 TCGA-AZ-4616-01 X 154293799 154293799 T C MTCP1 Missense_Mutation p.Q97R 0.23 deleterious(0.04) benign(0.003) TCGA-AZ-4616-01 X 3229634 3229634 C A MXRA5 Missense_Mutation p.G2204W 0.43 deleterious(0) probably_damaging(1) TCGA-AZ-4616-01 X 41413143 41413143 T G CASK Missense_Mutation p.Y623S 0.43 deleterious(0) probably_damaging(1) TCGA-AZ-4616-01 X 63411291 63411291 G A AMER1 Nonsense_Mutation p.R626* 0.32 TCGA-AZ-4616-01 X 79698410 79698410 T A FAM46D Missense_Mutation p.D124E 0.21 tolerated(0.87) benign(0.003) TCGA-AZ-4616-01 X 99551464 99551464 G A PCDH19 Silent p.A1086A 0.36 TCGA-AZ-4681-01 10 104176725 104176725 C T PSD Missense_Mutation p.R24H 0.38 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-AZ-4681-01 10 123325167 123325167 G T FGFR2 Missense_Mutation p.P54Q 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-4681-01 10 43619168 43619168 C G RET Missense_Mutation p.P951A 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-4681-01 11 11374096 11374096 G A CSNK2A3 Nonsense_Mutation p.R191* 0.06 TCGA-AZ-4681-01 11 117351272 117351272 G A DSCAML1 Missense_Mutation p.P951S 0.09 deleterious(0.04) probably_damaging(0.954) TCGA-AZ-4681-01 11 118402991 118402991 A G TMEM25 Missense_Mutation p.Y66C 0.11 deleterious(0) probably_damaging(1) TCGA-AZ-4681-01 11 14541746 14541746 C A PSMA1 Intron 0.34 TCGA-AZ-4681-01 11 45967555 45967555 C T PHF21A Splice_Site p.X429_splice 0.40 TCGA-AZ-4681-01 11 51411678 51411678 C T OR4A5 Missense_Mutation p.G240S 0.42 deleterious_low_confidence(0) benign(0.005) TCGA-AZ-4681-01 12 113629735 113629735 G A RITA1 3'UTR 0.60 TCGA-AZ-4681-01 12 124281354 124281354 T C DNAH10 Missense_Mutation p.I595T 0.13 benign(0.016) TCGA-AZ-4681-01 12 21727152 21727152 A G GYS2 Missense_Mutation p.F202L 0.12 deleterious(0) probably_damaging(0.996) TCGA-AZ-4681-01 12 41967381 41967381 G A PDZRN4 Missense_Mutation p.E934K 0.57 deleterious(0) probably_damaging(0.994) TCGA-AZ-4681-01 12 49579759 49579759 C T TUBA1A Silent p.T130T 0.45 TCGA-AZ-4681-01 12 52761081 52761081 C T KRT85 Missense_Mutation p.A37T 0.41 tolerated(0.06) probably_damaging(0.99) TCGA-AZ-4681-01 12 54448817 54448817 G A HOXC4 Missense_Mutation p.R208H 0.53 deleterious(0) probably_damaging(1) TCGA-AZ-4681-01 12 78444547 78444547 C A NAV3 Silent p.T712T 0.35 TCGA-AZ-4681-01 13 21751788 21751788 T - MRP63 3'UTR 0.44 TCGA-AZ-4681-01 13 23915778 23915778 A G SACS Missense_Mutation p.L746P 0.73 probably_damaging(0.998) TCGA-AZ-4681-01 13 23915783 23915783 T G SACS Silent p.A744A 0.75 TCGA-AZ-4681-01 14 45645998 45645998 G T FANCM Missense_Mutation p.L1347F 0.06 tolerated(0.31) possibly_damaging(0.494) TCGA-AZ-4681-01 14 93118393 93118393 G A RIN3 Silent p.P333P 0.33 TCGA-AZ-4681-01 15 100339944 100339944 A G DNM1P46 RNA 0.70 TCGA-AZ-4681-01 16 1485143 1485143 C T CCDC154 Missense_Mutation p.V554I 0.25 tolerated(1) benign(0.003) TCGA-AZ-4681-01 16 70514944 70514944 C T COG4 Missense_Mutation p.R780H 0.33 deleterious(0) probably_damaging(0.992) TCGA-AZ-4681-01 16 84067037 84067037 C T SLC38A8 Silent p.P142P 0.39 TCGA-AZ-4681-01 16 84229876 84229876 G A ADAD2 Missense_Mutation p.E558K 0.45 tolerated(0.09) benign(0.063) TCGA-AZ-4681-01 16 90001339 90001339 C T TUBB3 Silent p.P160P 0.48 TCGA-AZ-4681-01 17 41847171 41847171 C T DUSP3 Missense_Mutation p.V122I 0.47 deleterious(0.05) probably_damaging(0.997) TCGA-AZ-4681-01 17 4642138 4642138 G CT CXCL16 Frame_Shift_Ins p.Q72Rfs*46 0.49 TCGA-AZ-4681-01 17 4802324 4802324 C T CHRNE Missense_Mutation p.S433N 0.77 tolerated(0.54) benign(0.037) TCGA-AZ-4681-01 17 48755541 48755541 C T ABCC3 Silent p.N1222N 0.48 TCGA-AZ-4681-01 17 4876147 4876147 C T CAMTA2 Missense_Mutation p.R830H 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-AZ-4681-01 17 55962680 55962680 G T CUEDC1 Missense_Mutation p.D82E 0.55 deleterious(0) probably_damaging(1) TCGA-AZ-4681-01 17 70119762 70119763 - G SOX9 Frame_Shift_Ins p.R257Afs*39 0.36 TCGA-AZ-4681-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.76 tolerated(0.11) benign(0.308) TCGA-AZ-4681-01 17 78179400 78179400 C T CARD14 Silent p.S880S 0.41 TCGA-AZ-4681-01 19 42830290 42830290 G A MEGF8 5'UTR 0.44 TCGA-AZ-4681-01 19 44241758 44241758 C T SMG9 Missense_Mutation p.S329N 0.36 tolerated(1) benign(0.007) TCGA-AZ-4681-01 19 53794248 53794248 G A BIRC8 5'UTR 0.30 TCGA-AZ-4681-01 19 6741255 6741255 C G TRIP10 Missense_Mutation p.L54V 0.28 tolerated(0.5) benign(0.009) TCGA-AZ-4681-01 1 159163754 159163754 G A CADM3 Silent p.A239A 0.43 TCGA-AZ-4681-01 1 17084081 17084081 G A MST1L RNA 0.12 TCGA-AZ-4681-01 1 185106836 185106836 G T TRMT1L Missense_Mutation p.P472H 0.47 deleterious(0.03) possibly_damaging(0.823) TCGA-AZ-4681-01 1 196205134 196205134 A C KCNT2 Missense_Mutation p.I1093R 0.09 deleterious(0) benign(0.092) TCGA-AZ-4681-01 1 202245515 202245515 C T LGR6 Silent p.D170D 0.40 TCGA-AZ-4681-01 1 209955529 209955529 A G TRAF3IP3 3'UTR 0.08 TCGA-AZ-4681-01 1 212798697 212798697 C T FAM71A Missense_Mutation p.R160W 0.51 deleterious(0.03) benign(0.208) TCGA-AZ-4681-01 1 220824020 220824020 C A MARK1 Missense_Mutation p.T510N 0.36 tolerated(0.39) benign(0.002) TCGA-AZ-4681-01 1 229600616 229600616 C T NUP133 Missense_Mutation p.S769N 0.42 tolerated(0.08) probably_damaging(0.95) TCGA-AZ-4681-01 1 234041423 234041423 G A SLC35F3 Missense_Mutation p.V68M 0.47 deleterious_low_confidence(0.04) benign(0.009) TCGA-AZ-4681-01 1 234743252 234743252 G C IRF2BP2 Missense_Mutation p.N465K 0.14 tolerated(0.1) probably_damaging(0.932) TCGA-AZ-4681-01 1 27100207 27100207 C T ARID1A Nonsense_Mutation p.R1335* 0.54 TCGA-AZ-4681-01 1 6285119 6285119 G A ICMT 3'UTR 0.42 TCGA-AZ-4681-01 1 75037595 75037595 C T C1orf173 Missense_Mutation p.V1267M 0.60 tolerated(0.74) benign(0.002) TCGA-AZ-4681-01 20 62366598 62366598 C G ZGPAT Missense_Mutation p.T380S 0.26 deleterious(0.02) benign(0.028) TCGA-AZ-4681-01 20 7894923 7894923 G A HAO1 Missense_Mutation p.R145W 0.23 deleterious(0.01) possibly_damaging(0.762) TCGA-AZ-4681-01 22 19950117 19950117 T C COMT Missense_Mutation p.L23P 0.10 deleterious(0.05) benign(0.047) TCGA-AZ-4681-01 2 166451661 166451661 C G CSRNP3 Missense_Mutation p.S29C 0.40 tolerated(0.09) probably_damaging(0.995) TCGA-AZ-4681-01 2 167322420 167322421 - A SCN7A Frame_Shift_Ins p.L248Sfs*19 0.09 TCGA-AZ-4681-01 2 177036314 177036314 C T HOXD3 Missense_Mutation p.A204V 0.10 tolerated(0.06) benign(0.083) TCGA-AZ-4681-01 2 225811670 225811670 G A DOCK10 Intron 0.46 TCGA-AZ-4681-01 2 226447389 226447389 C T NYAP2 Missense_Mutation p.T419M 0.49 deleterious(0.01) possibly_damaging(0.885) TCGA-AZ-4681-01 2 43452458 43452459 - AGGGCCG ZFP36L2 Frame_Shift_Ins p.F162Sfs*314 0.24 TCGA-AZ-4681-01 2 47705596 47705596 A G MSH2 Missense_Mutation p.N799S 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-4681-01 2 97463362 97463362 C T CNNM4 Silent p.A553A 0.43 TCGA-AZ-4681-01 3 132244501 132244501 C T DNAJC13 Silent p.S2036S 0.47 TCGA-AZ-4681-01 3 24164380 24164380 C A THRB Missense_Mutation p.D461Y 0.48 deleterious(0) probably_damaging(0.916) TCGA-AZ-4681-01 3 31705573 31705573 C T OSBPL10 Missense_Mutation p.E750K 0.55 tolerated(0.16) probably_damaging(1) TCGA-AZ-4681-01 3 44598731 44598731 G C ZKSCAN7 Missense_Mutation p.E64D 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-AZ-4681-01 4 119203370 119203372 TTG - PRSS12 In_Frame_Del p.Q783del 0.39 TCGA-AZ-4681-01 4 120481464 120481464 C T PDE5A Missense_Mutation p.D396N 0.31 tolerated(0.36) benign(0.009) TCGA-AZ-4681-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.78 TCGA-AZ-4681-01 5 140203077 140203077 G A PCDHA5 Missense_Mutation p.G573S 0.36 tolerated_low_confidence(0.21) benign(0.031) TCGA-AZ-4681-01 5 153054199 153054199 G A GRIA1 Missense_Mutation p.R290Q 0.47 tolerated(0.11) possibly_damaging(0.669) TCGA-AZ-4681-01 5 169141181 169141181 C T DOCK2 Silent p.S603S 0.43 TCGA-AZ-4681-01 5 176314581 176314581 G A HK3 Missense_Mutation p.R491W 0.43 deleterious(0.03) benign(0.069) TCGA-AZ-4681-01 5 19520798 19520798 T C CDH18 Missense_Mutation p.I494V 0.18 tolerated(0.21) benign(0.002) TCGA-AZ-4681-01 5 72286600 72286600 C A FCHO2 Missense_Mutation p.A135D 0.40 tolerated(0.22) benign(0.045) TCGA-AZ-4681-01 5 98115457 98115458 - TAT RGMB In_Frame_Ins p.V145_Y146insL 0.82 TCGA-AZ-4681-01 6 136888917 136888917 G C MAP3K5 Missense_Mutation p.Q1205E 0.11 tolerated(1) benign(0.013) TCGA-AZ-4681-01 6 152779982 152779982 G T SYNE1 Silent p.S826S 0.44 TCGA-AZ-4681-01 6 26197209 26197209 C A HIST1H3D Silent p.V90V 0.45 TCGA-AZ-4681-01 6 30573724 30573724 T G PPP1R10 Missense_Mutation p.K277Q 0.47 tolerated(0.06) probably_damaging(0.969) TCGA-AZ-4681-01 6 31598531 31598532 - A PRRC2A Frame_Shift_Ins p.T807Nfs*10 0.34 TCGA-AZ-4681-01 6 43251371 43251371 G T TTBK1 Missense_Mutation p.A965S 0.45 benign(0.023) TCGA-AZ-4681-01 6 52285142 52285142 T ACA EFHC1 5'UTR 0.28 TCGA-AZ-4681-01 7 100681190 100681190 A T MUC17 Missense_Mutation p.S2165C 0.14 unknown(0) TCGA-AZ-4681-01 7 128040512 128040512 G A IMPDH1 Missense_Mutation p.R221W 0.41 deleterious(0.02) benign(0.056) TCGA-AZ-4681-01 7 134618203 134618203 T A CALD1 Nonsense_Mutation p.L228* 0.07 TCGA-AZ-4681-01 7 134925469 134925469 G C STRA8 Splice_Site p.X86_splice 0.24 TCGA-AZ-4681-01 7 151962204 151962204 C G KMT2C Missense_Mutation p.G368A 0.06 probably_damaging(0.999) TCGA-AZ-4681-01 7 154585834 154585834 C T DPP6 Silent p.V394V 0.29 TCGA-AZ-4681-01 7 28848820 28848820 A G CREB5 Missense_Mutation p.Q348R 0.60 deleterious(0.04) unknown(0) TCGA-AZ-4681-01 7 40535952 40535952 C A SUGCT Silent p.I359I 0.28 TCGA-AZ-4681-01 7 80292410 80292410 G A CD36 Silent p.L178L 0.05 TCGA-AZ-4681-01 7 92146932 92146932 G A PEX1 Silent p.N299N 0.27 TCGA-AZ-4681-01 7 92763787 92763787 C T SAMD9L Missense_Mutation p.G500S 0.32 deleterious(0.01) probably_damaging(1) TCGA-AZ-4681-01 8 114449218 114449218 C G CSMD3 5'UTR 0.35 TCGA-AZ-4681-01 8 38287326 38287326 G A FGFR1 Missense_Mutation p.R111C 0.15 deleterious(0) probably_damaging(0.949) TCGA-AZ-4681-01 8 86573332 86573332 G C REXO1L1P 3'UTR 0.14 TCGA-AZ-4681-01 8 87567168 87567168 G A CPNE3 Missense_Mutation p.V404M 0.39 deleterious(0.03) possibly_damaging(0.507) TCGA-AZ-4681-01 9 116836332 116836332 A C AMBP Missense_Mutation p.I146M 0.33 tolerated(0.09) benign(0.238) TCGA-AZ-4681-01 9 136380643 136380643 C T TMEM8C Silent p.A162A 0.36 TCGA-AZ-4681-01 9 34371230 34371230 C T KIAA1161 Missense_Mutation p.R537H 0.38 deleterious(0) probably_damaging(0.976) TCGA-AZ-4681-01 9 95608654 95608654 C T ZNF484 Silent p.K807K 0.42 TCGA-AZ-4681-01 9 98212133 98212133 G T PTCH1 Missense_Mutation p.P1180Q 0.08 deleterious(0) probably_damaging(1) TCGA-AZ-4681-01 X 109695712 109695712 G A RGAG1 Missense_Mutation p.A623T 0.11 tolerated(0.38) benign(0.109) TCGA-AZ-4681-01 X 129139262 129139262 C T BCORL1 Missense_Mutation p.R19W 0.40 unknown(0) TCGA-AZ-4681-01 X 32398668 32398668 C T DMD Missense_Mutation p.G1602R 0.39 probably_damaging(0.979) TCGA-AZ-4681-01 X 37026701 37026701 G A FAM47C Missense_Mutation p.R73H 0.10 tolerated(0.29) benign(0.048) TCGA-AZ-4681-01 X 47430897 47430897 C T ARAF 3'UTR 0.31 TCGA-AZ-4681-01 X 69719849 69719849 G A DLG3 Missense_Mutation p.D699N 0.36 tolerated(0.55) benign(0.407) TCGA-AZ-4682-01 10 15263045 15263045 T C FAM171A1 Missense_Mutation p.S257G 0.10 deleterious(0.01) possibly_damaging(0.681) TCGA-AZ-4682-01 10 25312635 25312635 A C THNSL1 Silent p.L161L 0.29 TCGA-AZ-4682-01 10 45430365 45430365 C - TMEM72 Frame_Shift_Del p.L205* 0.30 TCGA-AZ-4682-01 10 75574934 75574934 C T CAMK2G Missense_Mutation p.A504T 0.13 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AZ-4682-01 10 93038101 93038101 G T PCGF5 3'UTR 0.39 TCGA-AZ-4682-01 11 103055679 103055679 C T DYNC2H1 Missense_Mutation p.H2178Y 0.36 probably_damaging(0.972) TCGA-AZ-4682-01 11 122678867 122678867 G A UBASH3B Missense_Mutation p.V599I 0.38 tolerated(0.18) benign(0.005) TCGA-AZ-4682-01 11 124120432 124120432 G T OR8G1 Nonsense_Mutation p.E4* 0.30 TCGA-AZ-4682-01 11 34916561 34916561 G A APIP Missense_Mutation p.H52Y 0.38 tolerated(0.89) benign(0.003) TCGA-AZ-4682-01 11 3740772 3740772 A G NUP98 Missense_Mutation p.S757P 0.27 deleterious(0) probably_damaging(0.997) TCGA-AZ-4682-01 11 4566917 4566917 G A OR52M1 Missense_Mutation p.R166H 0.39 tolerated(0.05) benign(0.021) TCGA-AZ-4682-01 12 104083674 104083674 C T STAB2 Silent p.L1032L 0.29 TCGA-AZ-4682-01 12 107078599 107078599 G T RFX4 Intron 0.40 TCGA-AZ-4682-01 12 52883774 52883774 G A KRT6A Missense_Mutation p.R386C 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-4682-01 12 64472797 64472797 A G SRGAP1 Silent p.T408T 0.40 TCGA-AZ-4682-01 12 93101235 93101235 A G C12orf74 Intron 0.45 TCGA-AZ-4682-01 13 101795469 101795469 G A NALCN Missense_Mutation p.R694C 0.65 deleterious(0.02) benign(0.018) TCGA-AZ-4682-01 13 95131418 95131418 G A DCT Missense_Mutation p.T31M 0.57 deleterious(0) probably_damaging(0.999) TCGA-AZ-4682-01 15 65411087 65411087 C T PDCD7 Missense_Mutation p.D476N 0.52 deleterious(0.01) probably_damaging(0.985) TCGA-AZ-4682-01 15 81440836 81440836 C T C15orf26 Nonsense_Mutation p.R290* 0.41 TCGA-AZ-4682-01 16 1870002 1870002 C T HAGH Missense_Mutation p.G110R 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-4682-01 16 22337251 22337251 C T POLR3E Silent p.G506G 0.40 TCGA-AZ-4682-01 16 61851519 61851519 C T CDH8 Missense_Mutation p.V381M 0.31 tolerated(0.15) possibly_damaging(0.735) TCGA-AZ-4682-01 16 68265931 68265931 G A ESRP2 Missense_Mutation p.S358L 0.43 deleterious(0.05) benign(0.239) TCGA-AZ-4682-01 16 75513411 75513411 C T CHST6 Missense_Mutation p.V106M 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-4682-01 16 81078222 81078222 G A ATMIN Missense_Mutation p.D707N 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-4682-01 17 39742869 39742869 A T KRT14 Missense_Mutation p.F73Y 0.34 tolerated(1) unknown(0) TCGA-AZ-4682-01 17 59668491 59668491 C T NACA2 Silent p.P17P 0.28 TCGA-AZ-4682-01 17 62796831 62796831 T C PLEKHM1P RNA 0.08 TCGA-AZ-4682-01 17 78184395 78184395 C T SGSH Silent p.P455P 0.45 TCGA-AZ-4682-01 18 24127074 24127074 G A KCTD1 Intron 0.56 TCGA-AZ-4682-01 19 1251609 1251609 C A MIDN Missense_Mutation p.S94R 0.50 deleterious(0) probably_damaging(0.995) TCGA-AZ-4682-01 19 44039680 44039680 C T ZNF575 Silent p.A193A 0.41 TCGA-AZ-4682-01 19 51955827 51955827 C T SIGLEC8 Missense_Mutation p.A436T 0.51 tolerated(0.13) possibly_damaging(0.628) TCGA-AZ-4682-01 1 112524450 112524450 A T KCND3 Missense_Mutation p.F300Y 0.40 deleterious(0.03) benign(0.418) TCGA-AZ-4682-01 1 1447606 1447606 G T ATAD3A 5'UTR 0.75 TCGA-AZ-4682-01 1 151288470 151288470 C T PI4KB Missense_Mutation p.R175Q 0.08 deleterious(0.01) probably_damaging(0.935) TCGA-AZ-4682-01 1 183253890 183253890 G A NMNAT2 Missense_Mutation p.R162W 0.52 tolerated(0.05) possibly_damaging(0.865) TCGA-AZ-4682-01 1 236142339 236142339 G A NID1 Missense_Mutation p.T1193I 0.38 deleterious(0.04) benign(0.269) TCGA-AZ-4682-01 1 237919588 237919588 G A RYR2 Missense_Mutation p.E3716K 0.16 probably_damaging(0.911) TCGA-AZ-4682-01 1 248685643 248685643 G A OR2G6 Silent p.A232A 0.31 TCGA-AZ-4682-01 1 53323099 53323099 G A ZYG11A Missense_Mutation p.R229Q 0.29 tolerated(0.11) benign(0.013) TCGA-AZ-4682-01 1 92941605 92941605 G A GFI1 Missense_Mutation p.T417M 0.32 deleterious(0) probably_damaging(0.943) TCGA-AZ-4682-01 20 15967379 15967379 G A MACROD2 Silent p.E331E 0.33 TCGA-AZ-4682-01 20 33839764 33839764 G A MMP24 Missense_Mutation p.R151Q 0.07 tolerated(0.63) benign(0.002) TCGA-AZ-4682-01 20 60589748 60589748 C T TAF4 Missense_Mutation p.R459Q 0.12 probably_damaging(0.921) TCGA-AZ-4682-01 20 7894820 7894820 G A HAO1 Missense_Mutation p.P179L 0.40 deleterious(0.02) benign(0.185) TCGA-AZ-4682-01 21 37785221 37785221 C T CHAF1B Silent p.D367D 0.12 TCGA-AZ-4682-01 21 38126582 38126582 T A HLCS Missense_Mutation p.M716L 0.29 deleterious(0) probably_damaging(0.99) TCGA-AZ-4682-01 21 41384984 41384984 C T DSCAM Missense_Mutation p.A2006T 0.14 deleterious_low_confidence(0.04) benign(0.006) TCGA-AZ-4682-01 21 47711356 47711356 G C YBEY Missense_Mutation p.D107H 0.07 deleterious(0) possibly_damaging(0.548) TCGA-AZ-4682-01 22 26348276 26348276 G A MYO18B Missense_Mutation p.E1953K 0.33 deleterious(0.04) benign(0.039) TCGA-AZ-4682-01 2 105473434 105473434 C T POU3F3 Missense_Mutation p.P489L 0.35 deleterious_low_confidence(0) benign(0.013) TCGA-AZ-4682-01 2 175986239 175986239 G A ATF2 Silent p.V44V 0.73 TCGA-AZ-4682-01 2 1893037 1893037 G A MYT1L Silent p.D830D 0.70 TCGA-AZ-4682-01 2 228337217 228337217 G A AGFG1 Missense_Mutation p.R27Q 0.50 deleterious(0) probably_damaging(0.965) TCGA-AZ-4682-01 2 5833163 5833163 C A SOX11 Silent p.R104R 0.68 TCGA-AZ-4682-01 3 112299890 112299890 T G SLC35A5 Missense_Mutation p.L309R 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-4682-01 3 51264838 51264838 G A DOCK3 Missense_Mutation p.R501Q 0.49 tolerated(0.13) possibly_damaging(0.724) TCGA-AZ-4682-01 3 51434428 51434428 C A VPRBP 3'UTR 0.32 TCGA-AZ-4682-01 3 52255972 52255972 C T TLR9 Missense_Mutation p.R941Q 0.09 tolerated(0.84) benign(0.003) TCGA-AZ-4682-01 3 52538159 52538159 G A STAB1 Missense_Mutation p.V380M 0.21 tolerated(0.22) benign(0.104) TCGA-AZ-4682-01 3 54905646 54905646 C T CACNA2D3 Silent p.D569D 0.27 TCGA-AZ-4682-01 3 57386227 57386227 C T DNAH12 Missense_Mutation p.R10H 0.39 deleterious(0.02) probably_damaging(1) TCGA-AZ-4682-01 4 102015057 102015057 C A PPP3CA Nonsense_Mutation p.E220* 0.33 TCGA-AZ-4682-01 4 113506782 113506782 A C C4orf21 Missense_Mutation p.L1339R 0.34 tolerated(0.52) benign(0.02) TCGA-AZ-4682-01 4 158142943 158142943 C T GRIA2 Silent p.F71F 0.31 TCGA-AZ-4682-01 4 175580337 175580337 G C GLRA3 Silent p.V313V 0.26 TCGA-AZ-4682-01 4 189012873 189012873 C A TRIML2 Missense_Mutation p.G273V 0.33 deleterious(0.01) benign(0.331) TCGA-AZ-4682-01 4 66467728 66467728 C T EPHA5 Missense_Mutation p.E181K 0.33 deleterious(0) probably_damaging(0.987) TCGA-AZ-4682-01 4 68928593 68928593 A G TMPRSS11F Intron 0.36 TCGA-AZ-4682-01 4 82126123 82126123 G A PRKG2 Missense_Mutation p.R27W 0.36 deleterious(0) possibly_damaging(0.556) TCGA-AZ-4682-01 4 98893497 98893497 A G STPG2 Silent p.S289S 0.41 TCGA-AZ-4682-01 5 112151261 112151261 C T APC Nonsense_Mutation p.R302* 0.41 TCGA-AZ-4682-01 5 112175390 112175390 C T APC Nonsense_Mutation p.Q1367* 0.54 TCGA-AZ-4682-01 5 140175902 140175902 C T PCDHA2 Silent p.N451N 0.39 TCGA-AZ-4682-01 5 140531640 140531640 C T PCDHB6 Missense_Mutation p.S601L 0.40 deleterious(0) probably_damaging(0.991) TCGA-AZ-4682-01 5 179227524 179227524 G A MGAT4B Missense_Mutation p.R242C 0.25 deleterious(0.01) benign(0.06) TCGA-AZ-4682-01 5 38484942 38484942 G T LIFR Silent p.I842I 0.36 TCGA-AZ-4682-01 5 38484943 38484943 A T LIFR Missense_Mutation p.I842N 0.36 deleterious(0) probably_damaging(0.994) TCGA-AZ-4682-01 5 65077189 65077191 TGT - NLN In_Frame_Del p.C256del 0.25 TCGA-AZ-4682-01 6 136597605 136597605 C T BCLAF1 Missense_Mutation p.G353D 0.14 tolerated(0.07) benign(0.35) TCGA-AZ-4682-01 6 158925091 158925091 G T TULP4 Missense_Mutation p.V1466L 0.67 deleterious(0.03) benign(0.332) TCGA-AZ-4682-01 6 33133582 33133582 G A COL11A2 Silent p.G1412G 0.55 TCGA-AZ-4682-01 6 39869690 39869690 G A DAAM2 Silent p.S1028S 0.32 TCGA-AZ-4682-01 6 62390762 62390762 G C KHDRBS2 3'UTR 0.32 TCGA-AZ-4682-01 7 12412691 12412691 C T VWDE Missense_Mutation p.R500H 0.62 tolerated(1) benign(0.003) TCGA-AZ-4682-01 7 135301981 135301981 G A NUP205 Missense_Mutation p.V1226I 0.58 tolerated(0.12) benign(0.012) TCGA-AZ-4682-01 7 158457408 158457408 A C NCAPG2 Missense_Mutation p.V505G 0.24 deleterious(0) benign(0.066) TCGA-AZ-4682-01 7 1588269 1588269 C T TMEM184A Missense_Mutation p.A234T 0.18 deleterious(0) probably_damaging(0.99) TCGA-AZ-4682-01 7 20683239 20683239 C T ABCB5 Missense_Mutation p.A221V 0.46 deleterious(0.03) benign(0.249) TCGA-AZ-4682-01 7 44116210 44116210 C T POLM Missense_Mutation p.G245R 0.34 deleterious(0) probably_damaging(0.996) TCGA-AZ-4682-01 8 110477191 110477191 C T PKHD1L1 Silent p.V2710V 0.27 TCGA-AZ-4682-01 8 145770884 145770884 C T ARHGAP39 Missense_Mutation p.R757Q 0.18 deleterious(0) probably_damaging(0.919) TCGA-AZ-4682-01 8 146003460 146003460 G A ZNF34 Silent p.D62D 0.54 TCGA-AZ-4682-01 8 30209959 30209959 G A TUBBP1 RNA 0.56 TCGA-AZ-4682-01 8 41790070 41790070 C T KAT6A Missense_Mutation p.A1890T 0.31 unknown(0) TCGA-AZ-4682-01 8 43147880 43147880 G A POTEA RNA 0.41 TCGA-AZ-4682-01 9 139286974 139286974 G A SNAPC4 Silent p.N270N 0.24 TCGA-AZ-4682-01 9 140968500 140968500 C T CACNA1B Silent p.Y1613Y 0.41 TCGA-AZ-4682-01 9 40716022 40716022 G A FAM74A3 RNA 0.38 TCGA-AZ-4682-01 9 6012678 6012678 G A RANBP6 Missense_Mutation p.T977I 0.39 deleterious(0) benign(0.15) TCGA-AZ-4682-01 9 95179840 95179842 TCT - OMD Missense_Mutation 0.33 TCGA-AZ-4682-01 X 107304722 107304722 C T VSIG1 Missense_Mutation p.T93M 0.87 tolerated(0.17) benign(0.023) TCGA-AZ-4682-01 X 127185495 127185495 G A ACTRT1 Missense_Mutation p.R231C 0.79 tolerated(0.2) benign(0) TCGA-AZ-4682-01 X 155010874 155010874 G C SPRY3 3'UTR 0.32 TCGA-AZ-4682-01 X 41078483 41078483 A T USP9X Missense_Mutation p.L2188F 0.89 tolerated(0.12) benign(0.158) TCGA-AZ-4682-01 X 41084337 41084337 T A USP9X Nonsense_Mutation p.Y2336* 0.85 TCGA-AZ-4682-01 X 75651552 75651552 G A MAGEE1 3'UTR 0.86 TCGA-AZ-4682-01 X 9864521 9864521 C T SHROOM2 Missense_Mutation p.A858V 0.44 tolerated(0.36) benign(0) TCGA-AZ-5403-01 10 114920401 114920401 C T TCF7L2 Missense_Mutation p.R448W 0.39 deleterious(0) probably_damaging(0.999) TCGA-AZ-5403-01 10 49393641 49393641 C A FRMPD2 Nonsense_Mutation p.E772* 0.34 TCGA-AZ-5403-01 11 121008322 121008322 T A TECTA Missense_Mutation p.L1045H 0.30 deleterious(0.04) benign(0.08) TCGA-AZ-5403-01 11 130343579 130343579 T C ADAMTS15 Missense_Mutation p.S906P 0.09 deleterious(0) probably_damaging(1) TCGA-AZ-5403-01 11 44081458 44081458 A C ACCSL Silent p.A565A 0.09 TCGA-AZ-5403-01 11 49831498 49831498 T C RP11-707M1.1 RNA 0.31 TCGA-AZ-5403-01 11 5275627 5275627 A C HBG2 Silent p.T70T 0.09 TCGA-AZ-5403-01 11 62063877 62063877 T G SCGB1D4 3'UTR 0.11 TCGA-AZ-5403-01 11 62559340 62559340 G A TMEM223 Missense_Mutation p.R43C 0.10 deleterious(0) benign(0.131) TCGA-AZ-5403-01 11 67218798 67218798 G A GPR152 Silent p.G466G 0.28 TCGA-AZ-5403-01 11 794786 794786 A T SLC25A22 Missense_Mutation p.Y46N 0.12 deleterious(0) probably_damaging(0.998) TCGA-AZ-5403-01 12 132396535 132396535 G C ULK1 Missense_Mutation p.D333H 0.11 deleterious(0.02) benign(0.429) TCGA-AZ-5403-01 12 7046573 7046573 C T ATN1 Missense_Mutation p.P715S 0.25 benign(0.057) TCGA-AZ-5403-01 12 78444543 78444543 G A NAV3 Splice_Site p.X711_splice 0.46 TCGA-AZ-5403-01 13 28883045 28883045 A T FLT1 Missense_Mutation p.F1219I 0.18 tolerated(0.1) benign(0.01) TCGA-AZ-5403-01 13 36869974 36869974 A G CCDC169 Missense_Mutation p.I35T 0.22 tolerated(0.2) benign(0.009) TCGA-AZ-5403-01 13 36886576 36886576 C A SPG20 Nonsense_Mutation p.E508* 0.08 TCGA-AZ-5403-01 13 39262454 39262454 A T FREM2 Missense_Mutation p.M325L 0.24 tolerated(0.43) benign(0.088) TCGA-AZ-5403-01 13 52439525 52439525 C T CCDC70 Missense_Mutation p.P4L 0.40 tolerated_low_confidence(0.1) benign(0.003) TCGA-AZ-5403-01 14 103342783 103342783 A T TRAF3 Missense_Mutation p.D164V 0.14 deleterious(0.01) benign(0.405) TCGA-AZ-5403-01 14 37132336 37132336 C T PAX9 Missense_Mutation p.T80I 0.12 deleterious(0) probably_damaging(0.997) TCGA-AZ-5403-01 14 67382717 67382717 C G GPHN Intron 0.29 TCGA-AZ-5403-01 14 94079270 94079270 C T UNC79 Silent p.S1117S 0.19 TCGA-AZ-5403-01 15 101910627 101910627 C T PCSK6 Missense_Mutation p.R544H 0.28 deleterious(0) possibly_damaging(0.696) TCGA-AZ-5403-01 15 22383158 22383158 C A OR4N4 Missense_Mutation p.A229D 0.08 deleterious(0) possibly_damaging(0.474) TCGA-AZ-5403-01 15 34526004 34526004 G A SLC12A6 3'UTR 0.17 TCGA-AZ-5403-01 15 54307628 54307628 A G UNC13C Missense_Mutation p.E843G 0.10 deleterious_low_confidence(0.01) benign(0.164) TCGA-AZ-5403-01 16 11794378 11794378 T G TXNDC11 Missense_Mutation p.H279P 0.06 deleterious(0.04) possibly_damaging(0.865) TCGA-AZ-5403-01 16 27761367 27761367 G A KIAA0556 Missense_Mutation p.R1029H 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-5403-01 16 84024158 84024158 G A NECAB2 Silent p.T173T 0.14 TCGA-AZ-5403-01 17 56232604 56232604 G A OR4D1 Silent p.L30L 0.44 TCGA-AZ-5403-01 17 62034807 62034807 C T SCN4A Silent p.V697V 0.11 TCGA-AZ-5403-01 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.40 TCGA-AZ-5403-01 17 7579451 7579451 G A TP53 Missense_Mutation p.A79V 0.46 tolerated(0.29) benign(0.009) TCGA-AZ-5403-01 19 10368990 10368990 G A MRPL4 Missense_Mutation p.V180I 0.17 tolerated(0.24) benign(0.06) TCGA-AZ-5403-01 19 40872292 40872292 A G PLD3 Intron 0.08 TCGA-AZ-5403-01 19 54866937 54866937 G A LAIR1 Silent p.S268S 0.19 TCGA-AZ-5403-01 19 5694890 5694890 C T LONP1 Missense_Mutation p.R679H 0.22 tolerated(0.08) benign(0.014) TCGA-AZ-5403-01 19 57764533 57764533 G A ZNF805 Missense_Mutation p.A116T 0.18 tolerated(0.22) benign(0.003) TCGA-AZ-5403-01 19 58213271 58213271 C T ZNF154 Missense_Mutation p.G349E 0.11 deleterious(0) benign(0.186) TCGA-AZ-5403-01 19 58420888 58420888 A G ZNF417 Missense_Mutation p.V253A 0.13 tolerated(0.45) benign(0.01) TCGA-AZ-5403-01 1 101188722 101188722 G A VCAM1 Missense_Mutation p.E163K 0.19 deleterious(0.03) benign(0.263) TCGA-AZ-5403-01 1 117699602 117699602 A G VTCN1 Intron 0.12 TCGA-AZ-5403-01 1 144856833 144856833 C A PDE4DIP Nonsense_Mutation p.E2218* 0.11 TCGA-AZ-5403-01 1 156027790 156027790 C T LAMTOR2 Nonsense_Mutation p.R85* 0.30 TCGA-AZ-5403-01 1 159558553 159558553 T C APCS 3'UTR 0.08 TCGA-AZ-5403-01 1 159827676 159827676 C T VSIG8 Missense_Mutation p.G171R 0.11 tolerated(0.07) probably_damaging(0.986) TCGA-AZ-5403-01 1 203668725 203668725 T - ATP2B4 Frame_Shift_Del p.F177Sfs*50 0.28 TCGA-AZ-5403-01 1 206331351 206331351 C T CTSE 3'UTR 0.12 TCGA-AZ-5403-01 1 230846586 230846586 C T AGT Missense_Mutation p.R4Q 0.20 tolerated_low_confidence(0.46) benign(0.004) TCGA-AZ-5403-01 1 237756909 237756909 G T RYR2 Missense_Mutation p.G1470V 0.16 probably_damaging(0.974) TCGA-AZ-5403-01 1 249142735 249142735 G A ZNF672 Missense_Mutation p.R421H 0.19 tolerated(0.07) benign(0.309) TCGA-AZ-5403-01 1 37282815 37282815 G A GRIK3 Missense_Mutation p.T646M 0.17 deleterious(0) probably_damaging(0.998) TCGA-AZ-5403-01 20 25507064 25507064 C T NINL Missense_Mutation p.G54R 0.31 deleterious(0) possibly_damaging(0.849) TCGA-AZ-5403-01 20 34090454 34090454 G A CEP250 Silent p.L1419L 0.24 TCGA-AZ-5403-01 20 35060950 35060950 G T DLGAP4 Missense_Mutation p.C277F 0.31 tolerated(0.11) possibly_damaging(0.861) TCGA-AZ-5403-01 20 36685933 36685933 G C RPRD1B Splice_Site p.X139_splice 0.26 TCGA-AZ-5403-01 21 34962010 34962010 G A CRYZL1 3'UTR 0.13 TCGA-AZ-5403-01 21 45773534 45773534 A G TRPM2 5'UTR 0.09 TCGA-AZ-5403-01 21 47737222 47737222 C A C21orf58 Intron 0.21 TCGA-AZ-5403-01 2 113333456 113333456 T C POLR1B 3'UTR 0.21 TCGA-AZ-5403-01 2 120003147 120003147 C T STEAP3 Silent p.P35P 0.34 TCGA-AZ-5403-01 2 135075147 135075147 G A MGAT5 Missense_Mutation p.G152S 0.14 tolerated(0.17) possibly_damaging(0.571) TCGA-AZ-5403-01 2 152349890 152349890 G A NEB Missense_Mutation p.R8248C 0.31 probably_damaging(0.999) TCGA-AZ-5403-01 2 163130446 163130446 T G IFIH1 Missense_Mutation p.Q771H 0.14 deleterious(0) probably_damaging(0.998) TCGA-AZ-5403-01 2 21228796 21228796 G A APOB Silent p.V3648V 0.16 TCGA-AZ-5403-01 2 239010763 239010763 C T ESPNL Missense_Mutation p.A159V 0.19 tolerated(0.07) benign(0.243) TCGA-AZ-5403-01 3 121207891 121207891 C T POLQ Missense_Mutation p.G1296D 0.33 tolerated_low_confidence(0.61) benign(0.002) TCGA-AZ-5403-01 3 124416493 124416493 G A AC080008.1 5'Flank 0.18 TCGA-AZ-5403-01 3 151161336 151161336 G A IGSF10 Missense_Mutation p.T1800M 0.31 tolerated(0.14) benign(0.418) TCGA-AZ-5403-01 3 48577167 48577167 G C PFKFB4 Missense_Mutation p.A139G 0.07 benign(0.002) TCGA-AZ-5403-01 3 52840987 52840987 C G ITIH3 Nonsense_Mutation p.Y709* 0.09 TCGA-AZ-5403-01 3 9099942 9099942 C T SRGAP3 Missense_Mutation p.G339E 0.45 deleterious(0.01) probably_damaging(1) TCGA-AZ-5403-01 3 97367139 97367139 C G EPHA6 Intron 0.11 TCGA-AZ-5403-01 4 128665855 128665855 G C SLC25A31 Missense_Mutation p.L87F 0.44 tolerated(0.07) benign(0.022) TCGA-AZ-5403-01 4 155242139 155242139 G A DCHS2 Missense_Mutation p.T1016M 0.05 tolerated(0.54) benign(0.142) TCGA-AZ-5403-01 4 57221393 57221393 G A AASDH Missense_Mutation p.A353V 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-5403-01 4 87024394 87024394 T A MAPK10 Missense_Mutation p.I124F 0.12 deleterious(0) probably_damaging(0.984) TCGA-AZ-5403-01 5 115298705 115298705 G A AQPEP Missense_Mutation p.V131M 0.22 deleterious(0.01) probably_damaging(0.944) TCGA-AZ-5403-01 5 125939600 125939600 A T PHAX Missense_Mutation p.R145S 0.22 tolerated(0.55) benign(0.021) TCGA-AZ-5403-01 5 150911286 150911286 C A FAT2 Missense_Mutation p.V3225L 0.15 benign(0.055) TCGA-AZ-5403-01 5 160721119 160721119 T C GABRB2 Missense_Mutation p.N503S 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-5403-01 5 9630045 9630045 C A TAS2R1 Missense_Mutation p.D34Y 0.16 deleterious(0.05) benign(0.366) TCGA-AZ-5403-01 6 105198346 105198346 G A HACE1 Missense_Mutation p.A738V 0.13 tolerated(0.21) benign(0.089) TCGA-AZ-5403-01 6 110424761 110424761 C A WASF1 Splice_Site p.X238_splice 0.27 TCGA-AZ-5403-01 6 139167718 139167718 G T ECT2L Missense_Mutation p.K269N 0.31 tolerated(0.29) benign(0.006) TCGA-AZ-5403-01 6 145079102 145079102 T C UTRN Silent p.H2824H 0.17 TCGA-AZ-5403-01 6 74407174 74407174 G T CD109 Silent p.V42V 0.10 TCGA-AZ-5403-01 7 12409608 12409608 A T VWDE Missense_Mutation p.L775H 0.12 deleterious(0) possibly_damaging(0.784) TCGA-AZ-5403-01 7 142574304 142574304 G C TRPV6 Missense_Mutation p.P207A 0.06 deleterious(0.02) benign(0.058) TCGA-AZ-5403-01 7 1525136 1525136 T C INTS1 Intron 0.17 TCGA-AZ-5403-01 7 44091465 44091465 G A DBNL Missense_Mutation p.S59N 0.09 deleterious(0) benign(0.22) TCGA-AZ-5403-01 7 47436496 47436496 C T TNS3 Missense_Mutation p.E309K 0.15 deleterious(0.02) benign(0.094) TCGA-AZ-5403-01 8 100396480 100396480 G A VPS13B Missense_Mutation p.D957N 0.11 deleterious(0) probably_damaging(0.956) TCGA-AZ-5403-01 8 15998477 15998477 G A MSR1 Intron 0.11 TCGA-AZ-5403-01 8 2005855 2005855 C G MYOM2 Missense_Mutation p.L173V 0.18 deleterious(0) probably_damaging(0.999) TCGA-AZ-5403-01 8 3611464 3611464 C T CSMD1 Missense_Mutation p.A307T 0.18 probably_damaging(0.998) TCGA-AZ-5403-01 8 54142313 54142313 G A OPRK1 Silent p.C229C 0.12 TCGA-AZ-5403-01 8 68172102 68172102 G T ARFGEF1 Missense_Mutation p.T728N 0.09 tolerated(0.2) benign(0.033) TCGA-AZ-5403-01 8 97621763 97621763 A G SDC2 Missense_Mutation p.E198G 0.12 deleterious(0) probably_damaging(0.999) TCGA-AZ-5403-01 9 100757037 100757037 T G ANP32B Missense_Mutation p.L60R 0.09 deleterious(0) probably_damaging(1) TCGA-AZ-5403-01 9 139904286 139904286 C T ABCA2 Missense_Mutation p.G2189S 0.15 deleterious(0) probably_damaging(0.998) TCGA-AZ-5403-01 9 33113479 33113479 G A B4GALT1 Silent p.I390I 0.13 TCGA-AZ-5403-01 9 36121661 36121661 C T RECK Silent p.V890V 0.27 TCGA-AZ-5403-01 9 90315051 90315051 A T DAPK1 Missense_Mutation p.I924F 0.06 deleterious(0.01) probably_damaging(0.961) TCGA-AZ-5403-01 X 144905221 144905221 C G SLITRK2 Silent p.R426R 0.45 TCGA-AZ-5403-01 X 99662413 99662413 G A PCDH19 Nonsense_Mutation p.R395* 0.61 TCGA-AZ-5407-01 10 50723399 50723399 C T ERCC6-PGBD3 Missense_Mutation p.V1056I 0.10 tolerated_low_confidence(0.49) unknown(0) TCGA-AZ-5407-01 10 55581527 55581527 A G PCDH15 3'UTR 0.28 TCGA-AZ-5407-01 10 85944601 85944601 T C C10orf99 3'UTR 0.50 TCGA-AZ-5407-01 11 113142507 113142507 G A NCAM1 Missense_Mutation p.V838M 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-5407-01 11 123624864 123624864 G A OR6X1 Silent p.Y121Y 0.15 TCGA-AZ-5407-01 11 1271268 1271268 G A MUC5B Silent p.P4386P 0.35 TCGA-AZ-5407-01 11 134183297 134183297 G A GLB1L3 Missense_Mutation p.R503Q 0.11 tolerated(0.98) benign(0.003) TCGA-AZ-5407-01 11 65819863 65819863 C T SF3B2 Missense_Mutation p.T3M 0.42 deleterious_low_confidence(0) benign(0.001) TCGA-AZ-5407-01 11 66063110 66063110 C A TMEM151A Missense_Mutation p.Q465K 0.36 tolerated_low_confidence(0.15) benign(0.014) TCGA-AZ-5407-01 11 72288532 72288532 G A PDE2A Missense_Mutation p.P908S 0.17 deleterious(0.04) benign(0.071) TCGA-AZ-5407-01 11 72946050 72946050 C T P2RY2 Silent p.N282N 0.42 TCGA-AZ-5407-01 11 93826774 93826774 G A HEPHL1 Missense_Mutation p.R801Q 0.36 deleterious(0.02) benign(0.055) TCGA-AZ-5407-01 12 100463882 100463882 T A UHRF1BP1L Intron 0.14 TCGA-AZ-5407-01 12 121098100 121098100 G A CABP1 Missense_Mutation p.E263K 0.26 deleterious(0) probably_damaging(0.996) TCGA-AZ-5407-01 12 21958220 21958220 G T ABCC9 Intron 0.33 TCGA-AZ-5407-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.36 deleterious(0) benign(0.361) TCGA-AZ-5407-01 12 50135954 50135954 A T TMBIM6 Missense_Mutation p.Q12L 0.16 deleterious_low_confidence(0) benign(0.145) TCGA-AZ-5407-01 12 5153895 5153895 C T KCNA5 Silent p.D194D 0.18 TCGA-AZ-5407-01 12 53073867 53073867 C G KRT1 Missense_Mutation p.G89A 0.17 tolerated(0.22) unknown(0) TCGA-AZ-5407-01 12 53189730 53189730 C T KRT3 Missense_Mutation p.A33T 0.32 tolerated(0.12) unknown(0) TCGA-AZ-5407-01 12 64890765 64890765 G A TBK1 Silent p.T599T 0.29 TCGA-AZ-5407-01 12 80752471 80752471 C A OTOGL Missense_Mutation p.P2039T 0.34 deleterious(0) benign(0.016) TCGA-AZ-5407-01 12 93162793 93162793 C T PLEKHG7 Silent p.H323H 0.38 TCGA-AZ-5407-01 13 36767809 36767809 C T SOHLH2 Missense_Mutation p.E204K 0.08 deleterious(0) probably_damaging(0.996) TCGA-AZ-5407-01 13 79945191 79945191 G A RBM26 Missense_Mutation p.R175W 0.12 deleterious(0) unknown(0) TCGA-AZ-5407-01 13 99063007 99063007 C T FARP1 Missense_Mutation p.A541V 0.36 deleterious(0) probably_damaging(0.995) TCGA-AZ-5407-01 14 105419125 105419125 G A AHNAK2 Missense_Mutation p.A888V 0.18 possibly_damaging(0.804) TCGA-AZ-5407-01 14 65544747 65544747 C T MAX Missense_Mutation p.R60Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-AZ-5407-01 14 67859539 67859539 G A PLEK2 Missense_Mutation p.S170F 0.38 tolerated(0.2) benign(0.101) TCGA-AZ-5407-01 14 86089858 86089858 G A FLRT2 3'UTR 0.39 TCGA-AZ-5407-01 15 43621436 43621436 G A LCMT2 Missense_Mutation p.L418F 0.43 deleterious(0) probably_damaging(0.98) TCGA-AZ-5407-01 15 44116732 44116732 G C MFAP1 Silent p.P12P 0.22 TCGA-AZ-5407-01 15 50264849 50264849 G A ATP8B4 Silent p.S391S 0.40 TCGA-AZ-5407-01 15 59409539 59409539 C T CCNB2 Missense_Mutation p.S316F 0.27 deleterious(0) probably_damaging(0.953) TCGA-AZ-5407-01 16 10775898 10775898 G A TEKT5 Missense_Mutation p.T272M 0.35 deleterious(0) possibly_damaging(0.882) TCGA-AZ-5407-01 16 1270782 1270782 G A CACNA1H Missense_Mutation p.G2284S 0.33 tolerated_low_confidence(0.97) benign(0.005) TCGA-AZ-5407-01 16 27079717 27079717 C T C16orf82 RNA 0.06 TCGA-AZ-5407-01 16 28604869 28604869 G A SULT1A2 Silent p.N131N 0.13 TCGA-AZ-5407-01 16 69964047 69964047 C A WWP2 Missense_Mutation p.P444Q 0.12 tolerated(0.27) possibly_damaging(0.839) TCGA-AZ-5407-01 16 69964055 69964055 C T WWP2 Missense_Mutation p.P447S 0.12 deleterious(0) probably_damaging(0.999) TCGA-AZ-5407-01 16 83520148 83520148 G A CDH13 Missense_Mutation p.R330Q 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-5407-01 16 89347814 89347814 G C ANKRD11 Missense_Mutation p.C1712W 0.27 possibly_damaging(0.711) TCGA-AZ-5407-01 16 89986622 89986622 C T MC1R 3'UTR 0.35 TCGA-AZ-5407-01 16 90021593 90021593 G A DEF8 Silent p.L108L 0.20 TCGA-AZ-5407-01 17 1800367 1800367 C T RPA1 Silent p.D583D 0.25 TCGA-AZ-5407-01 17 37107881 37107881 A T FBXO47 Missense_Mutation p.L190Q 0.15 tolerated(0.17) benign(0.018) TCGA-AZ-5407-01 17 37107882 37107882 G T FBXO47 Missense_Mutation p.L190M 0.15 tolerated(0.07) benign(0.372) TCGA-AZ-5407-01 17 39535396 39535396 G A KRT34 Silent p.S345S 0.42 TCGA-AZ-5407-01 17 45362002 45362002 G A ITGB3 Silent p.K185K 0.44 TCGA-AZ-5407-01 17 49338178 49338178 T G UTP18 Missense_Mutation p.L78R 0.39 tolerated(0.08) benign(0.293) TCGA-AZ-5407-01 17 59560686 59560686 C T TBX4 Nonsense_Mutation p.R483* 0.30 TCGA-AZ-5407-01 17 617944 617944 C A VPS53 Missense_Mutation p.M2I 0.17 tolerated_low_confidence(0.19) unknown(0) TCGA-AZ-5407-01 17 617945 617945 A C VPS53 Missense_Mutation p.M2R 0.18 deleterious_low_confidence(0.02) unknown(0) TCGA-AZ-5407-01 17 63545630 63545638 ATACTCACA - AXIN2 Splice_Site p.X319_splice 0.24 TCGA-AZ-5407-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.21 tolerated(0.11) benign(0.308) TCGA-AZ-5407-01 17 7606142 7606142 C T WRAP53 Missense_Mutation p.R416C 0.07 deleterious(0) probably_damaging(1) TCGA-AZ-5407-01 17 78272227 78272227 C T RNF213 Missense_Mutation p.R707W 0.30 benign(0.424) TCGA-AZ-5407-01 17 7917924 7917924 G T GUCY2D Missense_Mutation p.K806N 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-5407-01 18 34853005 34853005 G A CELF4 Missense_Mutation p.A308V 0.41 tolerated(0.73) benign(0.433) TCGA-AZ-5407-01 19 18368695 18368695 G T KIAA1683 Silent p.I1133I 0.53 TCGA-AZ-5407-01 19 18377781 18377781 T C KIAA1683 Missense_Mutation p.K190R 0.12 tolerated(0.1) benign(0.132) TCGA-AZ-5407-01 19 2110157 2110157 C T AP3D1 Missense_Mutation p.G1081E 0.14 deleterious(0) benign(0.383) TCGA-AZ-5407-01 19 30935604 30935604 G A ZNF536 Missense_Mutation p.G379S 0.22 deleterious(0.03) probably_damaging(1) TCGA-AZ-5407-01 19 3496576 3496576 T C DOHH Silent p.Q79Q 0.14 TCGA-AZ-5407-01 19 36278772 36278772 G A ARHGAP33 Missense_Mutation p.R941H 0.27 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-AZ-5407-01 19 52133309 52133309 G T SIGLEC5 Silent p.I66I 0.11 TCGA-AZ-5407-01 19 54410004 54410004 C T PRKCG Missense_Mutation p.A650V 0.12 tolerated(0.09) benign(0.059) TCGA-AZ-5407-01 19 57175779 57175781 GAG - ZNF835 In_Frame_Del p.S263del 0.62 TCGA-AZ-5407-01 19 58067692 58067692 A G ZNF550 Missense_Mutation p.F12L 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-AZ-5407-01 19 5896556 5896556 G A NDUFA11 Missense_Mutation p.T74I 0.05 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-AZ-5407-01 19 6381752 6381752 C T GTF2F1 Silent p.G264G 0.11 TCGA-AZ-5407-01 1 161132449 161132449 G A USP21 Missense_Mutation p.E276K 0.07 tolerated(0.06) benign(0.297) TCGA-AZ-5407-01 1 19166592 19166592 C T TAS1R2 Missense_Mutation p.R674H 0.37 tolerated(0.07) possibly_damaging(0.769) TCGA-AZ-5407-01 1 207874942 207874942 T C CR1L Missense_Mutation p.I436T 0.14 deleterious(0) possibly_damaging(0.721) TCGA-AZ-5407-01 1 209952753 209952753 T C TRAF3IP3 Intron 0.09 TCGA-AZ-5407-01 1 22973964 22973964 G A C1QC Silent p.A142A 0.05 TCGA-AZ-5407-01 1 35223498 35223498 C A GJB5 Missense_Mutation p.F189L 0.36 deleterious(0.02) probably_damaging(0.973) TCGA-AZ-5407-01 1 47685462 47685462 G A TAL1 Missense_Mutation p.A309V 0.43 tolerated(0.07) benign(0.037) TCGA-AZ-5407-01 1 6505931 6505931 C T ESPN Missense_Mutation p.A467V 0.07 deleterious_low_confidence(0) benign(0.371) TCGA-AZ-5407-01 1 70339336 70339336 C T LRRC7 Intron 0.33 TCGA-AZ-5407-01 1 89734520 89734520 C T GBP5 Silent p.T70T 0.43 TCGA-AZ-5407-01 20 30070268 30070268 G A REM1 Missense_Mutation p.R201H 0.34 deleterious(0) probably_damaging(0.993) TCGA-AZ-5407-01 20 35632041 35632041 A G RBL1 Intron 0.10 TCGA-AZ-5407-01 20 44569840 44569840 C T PCIF1 Nonsense_Mutation p.R223* 0.33 TCGA-AZ-5407-01 20 44695800 44695800 G A NCOA5 Missense_Mutation p.R175W 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-5407-01 20 45865096 45865096 C T ZMYND8 Missense_Mutation p.A898T 0.39 deleterious(0.04) benign(0.259) TCGA-AZ-5407-01 20 50768876 50768876 C T ZFP64 Missense_Mutation p.A619T 0.37 deleterious(0.05) probably_damaging(0.99) TCGA-AZ-5407-01 21 44841639 44841639 C T SIK1 Silent p.A126A 0.21 TCGA-AZ-5407-01 2 148674942 148674942 C T ACVR2A Nonsense_Mutation p.R255* 0.10 TCGA-AZ-5407-01 2 232577602 232577602 G A PTMA 3'UTR 0.09 TCGA-AZ-5407-01 2 25462010 25462010 G A DNMT3A Silent p.P799P 0.05 TCGA-AZ-5407-01 2 54872483 54872483 G A SPTBN1 Missense_Mutation p.V1463M 0.12 deleterious(0.02) probably_damaging(0.957) TCGA-AZ-5407-01 2 74741997 74741997 G A TLX2 Missense_Mutation p.D22N 0.06 deleterious(0.03) possibly_damaging(0.821) TCGA-AZ-5407-01 2 85554644 85554644 T A TGOLN2 Missense_Mutation p.S71C 0.23 deleterious(0.05) benign(0.123) TCGA-AZ-5407-01 3 150916709 150916709 T A GPR171 Missense_Mutation p.K155N 0.20 tolerated(0.06) benign(0.009) TCGA-AZ-5407-01 3 32933066 32933066 C A TRIM71 Silent p.G790G 0.43 TCGA-AZ-5407-01 3 38437042 38437042 A T XYLB Missense_Mutation p.R446S 0.37 tolerated(0.16) benign(0.014) TCGA-AZ-5407-01 3 50231061 50231061 C T GNAT1 Silent p.R138R 0.10 TCGA-AZ-5407-01 3 53842727 53842727 A G CACNA1D Missense_Mutation p.Q1954R 0.29 tolerated_low_confidence(0.53) benign(0.229) TCGA-AZ-5407-01 3 64507916 64507916 C A ADAMTS9 Silent p.G1913G 0.34 TCGA-AZ-5407-01 4 187455587 187455587 A G MTNR1A Silent p.S103S 0.45 TCGA-AZ-5407-01 4 57883798 57883798 C T POLR2B Missense_Mutation p.R743C 0.06 deleterious(0) probably_damaging(1) TCGA-AZ-5407-01 4 85418780 85418780 G A NKX6-1 Missense_Mutation p.T201M 0.16 deleterious(0.05) unknown(0) TCGA-AZ-5407-01 5 10461395 10461395 C T ROPN1L Missense_Mutation p.R173C 0.13 tolerated(0.07) benign(0.012) TCGA-AZ-5407-01 5 112175141 112175141 G T APC Nonsense_Mutation p.E1284* 0.34 TCGA-AZ-5407-01 5 112175879 112175879 G T APC Nonsense_Mutation p.E1530* 0.37 TCGA-AZ-5407-01 5 76709009 76709009 A T PDE8B Missense_Mutation p.T596S 0.36 deleterious(0) benign(0.29) TCGA-AZ-5407-01 6 159456976 159456976 C T TAGAP Silent p.P693P 0.12 TCGA-AZ-5407-01 6 166826260 166826260 G A RPS6KA2 Missense_Mutation p.T739M 0.28 deleterious(0) probably_damaging(0.979) TCGA-AZ-5407-01 6 169648567 169648567 G A THBS2 Missense_Mutation p.A185V 0.12 deleterious(0.02) benign(0.003) TCGA-AZ-5407-01 6 89808273 89808273 G A SRSF12 3'UTR 0.05 TCGA-AZ-5407-01 7 100683794 100683794 G A MUC17 Missense_Mutation p.G3033S 0.15 probably_damaging(0.996) TCGA-AZ-5407-01 7 103294581 103294581 C A RELN Nonsense_Mutation p.E505* 0.45 TCGA-AZ-5407-01 7 149557637 149557637 G A ZNF862 Missense_Mutation p.R463H 0.60 deleterious(0.02) probably_damaging(0.994) TCGA-AZ-5407-01 7 63727066 63727066 A T ZNF679 Missense_Mutation p.Y352F 0.11 deleterious(0.04) benign(0.399) TCGA-AZ-5407-01 8 144735102 144735102 G A ZNF623 3'UTR 0.27 TCGA-AZ-5407-01 8 33449641 33449641 C T DUSP26 Missense_Mutation p.V176M 0.31 deleterious(0) probably_damaging(0.964) TCGA-AZ-5407-01 8 85441713 85441713 G A RALYL Missense_Mutation p.V66I 0.27 deleterious(0.03) possibly_damaging(0.795) TCGA-AZ-5407-01 9 117825271 117825271 T G TNC Missense_Mutation p.T1320P 0.38 deleterious(0) possibly_damaging(0.685) TCGA-AZ-5407-01 9 13106854 13106854 C T MPDZ 3'UTR 0.14 TCGA-AZ-5407-01 9 138588564 138588564 C T SOHLH1 Silent p.A185A 0.38 TCGA-AZ-5407-01 9 43624922 43624922 G A SPATA31A6 Silent p.G1255G 0.35 TCGA-AZ-5407-01 X 103045533 103045533 G A PLP1 3'UTR 0.35 TCGA-AZ-5407-01 X 114347634 114347634 G T LRCH2 3'UTR 0.50 TCGA-AZ-5407-01 X 130217767 130217767 C T ARHGAP36 Missense_Mutation p.R127C 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-5407-01 X 134167431 134167431 C T FAM127A 3'UTR 0.37 TCGA-AZ-5407-01 X 34961691 34961691 G A FAM47B Missense_Mutation p.R248H 0.29 tolerated(0.44) benign(0.001) TCGA-AZ-5407-01 X 54959790 54959790 G T PFKFB1 3'UTR 0.24 TCGA-AZ-5407-01 X 63412095 63412095 G A AMER1 Nonsense_Mutation p.R358* 0.34 TCGA-AZ-5407-01 X 77301996 77301996 G A ATP7A Missense_Mutation p.V1478I 0.30 tolerated(0.2) benign(0.089) TCGA-AZ-5407-01 X 79971739 79971739 C A BRWD3 Nonsense_Mutation p.E748* 0.32 TCGA-AZ-5407-01 X 79984405 79984405 C A BRWD3 Splice_Site p.X411_splice 0.24 TCGA-AZ-5407-01 X 82763465 82763465 G A POU3F4 Missense_Mutation p.G45R 0.21 deleterious(0.01) possibly_damaging(0.839) TCGA-AZ-6598-01 10 101163327 101163327 G T GOT1 Silent p.S286S 0.48 TCGA-AZ-6598-01 10 102054853 102054853 T - PKD2L1 Frame_Shift_Del p.T462Pfs*2 0.31 TCGA-AZ-6598-01 10 102748774 102748774 C T C10orf2 Silent p.S269S 0.34 TCGA-AZ-6598-01 10 102789809 102789809 G A PDZD7 Silent p.R56R 0.44 TCGA-AZ-6598-01 10 103826900 103826900 C - HPS6 Frame_Shift_Del p.N559Mfs*54 0.29 TCGA-AZ-6598-01 10 103892898 103892898 G - PPRC1 Frame_Shift_Del p.G26Efs*21 0.39 TCGA-AZ-6598-01 10 103900058 103900058 G A PPRC1 Missense_Mutation p.G598D 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-AZ-6598-01 10 103919000 103919002 AGC - NOLC1 In_Frame_Del p.S227del 0.34 TCGA-AZ-6598-01 10 104175781 104175781 G - PSD Frame_Shift_Del p.S251Afs*43 0.11 TCGA-AZ-6598-01 10 105420830 105420830 A G SH3PXD2A Missense_Mutation p.V172A 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-AZ-6598-01 10 105820016 105820016 G A COL17A1 Silent p.S334S 0.07 TCGA-AZ-6598-01 10 106916998 106916998 G T SORCS3 Missense_Mutation p.A529S 0.42 tolerated(0.06) probably_damaging(0.971) TCGA-AZ-6598-01 10 1087255 1087256 - T IDI1 Frame_Shift_Ins p.A243Sfs*5 0.27 TCGA-AZ-6598-01 10 112581661 112581661 A - RBM20 Frame_Shift_Del p.N1096Tfs*8 0.24 TCGA-AZ-6598-01 10 112839197 112839198 - G ADRA2A 3'UTR 0.36 TCGA-AZ-6598-01 10 115380366 115380366 G A NRAP Silent p.S957S 0.49 TCGA-AZ-6598-01 10 118891717 118891717 G A VAX1 3'Flank 0.45 TCGA-AZ-6598-01 10 119013961 119013961 G A SLC18A2 Missense_Mutation p.G218D 0.51 deleterious(0) possibly_damaging(0.803) TCGA-AZ-6598-01 10 120445649 120445649 C - CACUL1 Frame_Shift_Del p.Y368Tfs*100 0.35 TCGA-AZ-6598-01 10 122668413 122668413 C T WDR11 3'UTR 0.44 TCGA-AZ-6598-01 10 123276899 123276905 ATTCCCC - FGFR2 Intron 0.36 TCGA-AZ-6598-01 10 123600644 123600644 G A ATE1 Silent p.Y370Y 0.18 TCGA-AZ-6598-01 10 123727282 123727282 G T NSMCE4A Missense_Mutation p.L181I 0.37 tolerated(0.19) benign(0.021) TCGA-AZ-6598-01 10 124097586 124097586 T G BTBD16 Missense_Mutation p.F503V 0.07 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 10 124402882 124402883 - C DMBT1 Frame_Shift_Ins p.R2407Tfs*79 0.32 TCGA-AZ-6598-01 10 124608770 124608770 C T FAM24B Missense_Mutation p.G93D 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 10 124895627 124895627 C - HMX3 Frame_Shift_Del p.P23Hfs*100 0.51 TCGA-AZ-6598-01 10 128973986 128973986 A C FAM196A Missense_Mutation p.L225R 0.10 tolerated(0.35) benign(0.004) TCGA-AZ-6598-01 10 129537175 129537175 C T FOXI2 Silent p.A301A 0.44 TCGA-AZ-6598-01 10 134161715 134161715 C T LRRC27 Missense_Mutation p.R261C 0.46 deleterious(0) probably_damaging(0.973) TCGA-AZ-6598-01 10 134712537 134712537 C T TTC40 Missense_Mutation p.V1049I 0.43 tolerated(0.29) benign(0.048) TCGA-AZ-6598-01 10 135085127 135085127 C T ADAM8 Missense_Mutation p.A397T 0.37 tolerated(0.6) benign(0.054) TCGA-AZ-6598-01 10 135204869 135204869 G A RP11-108K14.8 Missense_Mutation p.A22T 0.48 tolerated_low_confidence(0.08) benign(0.011) TCGA-AZ-6598-01 10 13702480 13702480 C T FRMD4A Silent p.S578S 0.44 TCGA-AZ-6598-01 10 14890796 14890796 A - HSPA14 Frame_Shift_Del p.N95Mfs*8 0.38 TCGA-AZ-6598-01 10 14977461 14977461 C T DCLRE1C Splice_Site p.X155_splice 0.45 TCGA-AZ-6598-01 10 16528506 16528506 T C PTER Silent p.C196C 0.52 TCGA-AZ-6598-01 10 17032457 17032457 T C CUBN Missense_Mutation p.N1409S 0.12 tolerated(0.06) benign(0.098) TCGA-AZ-6598-01 10 17113554 17113554 A - CUBN Frame_Shift_Del p.P833Lfs*67 0.26 TCGA-AZ-6598-01 10 17130202 17130202 G A CUBN Silent p.S636S 0.39 TCGA-AZ-6598-01 10 24508692 24508692 G - KIAA1217 Frame_Shift_Del p.R73Efs*22 0.33 TCGA-AZ-6598-01 10 25465149 25465149 C T GPR158 Missense_Mutation p.P267L 0.42 tolerated(0.15) benign(0.009) TCGA-AZ-6598-01 10 26443677 26443677 C T MYO3A Silent p.G906G 0.38 TCGA-AZ-6598-01 10 26500920 26500920 G A MYO3A 3'UTR 0.49 TCGA-AZ-6598-01 10 27329038 27329038 T - ANKRD26 Frame_Shift_Del p.N744Ifs*8 0.41 TCGA-AZ-6598-01 10 27552114 27552114 G A ARMC4P1 RNA 0.28 TCGA-AZ-6598-01 10 27964038 27964038 T C MKX 3'UTR 0.50 TCGA-AZ-6598-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.40 TCGA-AZ-6598-01 10 29779862 29779862 G A SVIL Missense_Mutation p.A1369V 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 10 29815967 29815967 C T SVIL Silent p.S755S 0.14 TCGA-AZ-6598-01 10 30986425 30986425 C A SVILP1 RNA 0.28 TCGA-AZ-6598-01 10 3175483 3175483 A T PFKP Missense_Mutation p.N667Y 0.50 deleterious(0) probably_damaging(0.994) TCGA-AZ-6598-01 10 31810580 31810580 G T ZEB1 Missense_Mutation p.A774S 0.53 tolerated(0.33) possibly_damaging(0.505) TCGA-AZ-6598-01 10 32128615 32128615 A G ARHGAP12 Missense_Mutation p.C441R 0.10 tolerated(0.35) benign(0.024) TCGA-AZ-6598-01 10 32580237 32580237 C T EPC1 Missense_Mutation p.D277N 0.36 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 10 34558596 34558596 T C PARD3 Silent p.S1139S 0.38 TCGA-AZ-6598-01 10 34673131 34673131 A G PARD3 Silent p.H314H 0.48 TCGA-AZ-6598-01 10 35317808 35317808 G A CUL2 Missense_Mutation p.A535V 0.39 deleterious(0) benign(0.406) TCGA-AZ-6598-01 10 35819163 35819163 G A CCNY Missense_Mutation p.V191I 0.31 tolerated(0.49) probably_damaging(0.997) TCGA-AZ-6598-01 10 35929056 35929056 G A FZD8 Silent p.I434I 0.42 TCGA-AZ-6598-01 10 35930280 35930280 C A FZD8 Silent p.A26A 0.29 TCGA-AZ-6598-01 10 38658886 38658887 - T HSD17B7P2 RNA 0.32 TCGA-AZ-6598-01 10 48390105 48390105 C T RBP3 Missense_Mutation p.R258Q 0.08 tolerated(0.15) probably_damaging(0.976) TCGA-AZ-6598-01 10 48413586 48413586 A G GDF2 Missense_Mutation p.C428R 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 10 49994775 49994775 T A WDFY4 Missense_Mutation p.V1223D 0.37 deleterious(0.01) possibly_damaging(0.602) TCGA-AZ-6598-01 10 50025369 50025369 G A WDFY4 Missense_Mutation p.R1807H 0.46 tolerated(1) benign(0.001) TCGA-AZ-6598-01 10 50818840 50818840 G A SLC18A3 Silent p.S18S 0.12 TCGA-AZ-6598-01 10 51819026 51819026 C T RP11-324H6.5 RNA 0.41 TCGA-AZ-6598-01 10 5238829 5238829 C T AKR1C4 5'UTR 0.40 TCGA-AZ-6598-01 10 52751098 52751098 G A PRKG1 5'UTR 0.57 TCGA-AZ-6598-01 10 53457686 53457686 C A CSTF2T Missense_Mutation p.G542C 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-AZ-6598-01 10 53822348 53822348 A G PRKG1 Missense_Mutation p.T298A 0.40 tolerated(0.15) benign(0.007) TCGA-AZ-6598-01 10 5435655 5435655 G A TUBAL3 Missense_Mutation p.T389M 0.43 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AZ-6598-01 10 55566349 55566349 G T PCDH15 Missense_Mutation p.T1679K 0.39 deleterious_low_confidence(0) benign(0.071) TCGA-AZ-6598-01 10 5789074 5789075 AT - FAM208B Frame_Shift_Del p.S1231Rfs*2 0.15 TCGA-AZ-6598-01 10 60027408 60027409 - A IPMK 5'UTR 0.32 TCGA-AZ-6598-01 10 61828580 61828580 T - ANK3 Frame_Shift_Del p.K4020Rfs*45 0.32 TCGA-AZ-6598-01 10 61829484 61829484 G A ANK3 Missense_Mutation p.R3719C 0.35 probably_damaging(0.985) TCGA-AZ-6598-01 10 61831360 61831360 G A ANK3 Silent p.P3093P 0.40 TCGA-AZ-6598-01 10 61848090 61848090 T C ANK3 Missense_Mutation p.K1119E 0.40 benign(0.105) TCGA-AZ-6598-01 10 62648734 62648734 G A RHOBTB1 Missense_Mutation p.A231V 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-AZ-6598-01 10 64000928 64000928 C A RTKN2 Missense_Mutation p.D115Y 0.40 deleterious(0) possibly_damaging(0.877) TCGA-AZ-6598-01 10 64566447 64566447 T - ADO 3'UTR 0.32 TCGA-AZ-6598-01 10 64573574 64573574 C - EGR2 Frame_Shift_Del p.G275Afs*6 0.45 TCGA-AZ-6598-01 10 70098417 70098417 C T HNRNPH3 Nonsense_Mutation p.R137* 0.40 TCGA-AZ-6598-01 10 70332410 70332410 G A TET1 Silent p.A105A 0.49 TCGA-AZ-6598-01 10 71877619 71877619 G A AIFM2 Missense_Mutation p.R189W 0.52 deleterious(0.04) probably_damaging(0.953) TCGA-AZ-6598-01 10 7239538 7239538 G A SFMBT2 Missense_Mutation p.P557L 0.45 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 10 72434613 72434613 A G ADAMTS14 Silent p.V128V 0.44 TCGA-AZ-6598-01 10 73048730 73048730 G A UNC5B Missense_Mutation p.S361N 0.40 tolerated(0.56) benign(0.001) TCGA-AZ-6598-01 10 73567341 73567341 C T CDH23 Missense_Mutation p.R553W 0.36 deleterious(0) probably_damaging(0.991) TCGA-AZ-6598-01 10 73580076 73580076 G A PSAP Missense_Mutation p.A309V 0.08 tolerated(0.42) benign(0.005) TCGA-AZ-6598-01 10 75184040 75184040 C T MSS51 3'UTR 0.47 TCGA-AZ-6598-01 10 75198021 75198021 C T PPP3CB Silent p.T519T 0.41 TCGA-AZ-6598-01 10 75407258 75407258 T C SYNPO2L Missense_Mutation p.T718A 0.32 tolerated(0.49) benign(0.001) TCGA-AZ-6598-01 10 75435098 75435098 G A AGAP5 Silent p.S440S 0.40 TCGA-AZ-6598-01 10 75530964 75530964 G - SEC24C 3'UTR 0.23 TCGA-AZ-6598-01 10 7618517 7618517 G A ITIH5 Missense_Mutation p.P626L 0.09 tolerated(0.11) benign(0.013) TCGA-AZ-6598-01 10 7618900 7618900 G - ITIH5 Frame_Shift_Del p.T499Pfs*43 0.31 TCGA-AZ-6598-01 10 7811250 7811250 C A KIN Nonsense_Mutation p.E243* 0.44 TCGA-AZ-6598-01 10 78646919 78646919 A G KCNMA1 3'Flank 0.35 TCGA-AZ-6598-01 10 79589178 79589178 C T DLG5 Missense_Mutation p.R707Q 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-6598-01 10 81060579 81060579 C T ZMIZ1 Silent p.N633N 0.48 TCGA-AZ-6598-01 10 81146016 81146016 G A ZCCHC24 3'UTR 0.49 TCGA-AZ-6598-01 10 85974536 85974536 G A CDHR1 3'UTR 0.50 TCGA-AZ-6598-01 10 875407 875407 C T LARP4B Missense_Mutation p.S348N 0.23 tolerated(0.37) benign(0.021) TCGA-AZ-6598-01 10 88702088 88702088 G A MMRN2 Missense_Mutation p.A818V 0.45 tolerated(0.17) benign(0.018) TCGA-AZ-6598-01 10 88911797 88911797 G A FAM35A Missense_Mutation p.R229K 0.11 tolerated(0.57) benign(0.056) TCGA-AZ-6598-01 10 88994390 88994390 C T NUTM2A Silent p.G854G 0.22 TCGA-AZ-6598-01 10 89622655 89622655 G A KLLN 5'UTR 0.09 TCGA-AZ-6598-01 10 90583137 90583137 T G ANKRD22 Splice_Site p.X134_splice 0.22 TCGA-AZ-6598-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.36 TCGA-AZ-6598-01 10 91190491 91190491 A G SLC16A12 3'UTR 0.32 TCGA-AZ-6598-01 10 93588101 93588101 A - TNKS2 Frame_Shift_Del p.K349Nfs*8 0.37 TCGA-AZ-6598-01 10 93622836 93622837 - A TNKS2 3'UTR 0.35 TCGA-AZ-6598-01 10 94659525 94659525 T C EXOC6 Intron 0.45 TCGA-AZ-6598-01 10 94834128 94834128 G A CYP26A1 Missense_Mutation p.G85R 0.54 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 10 95993929 95993929 A T PLCE1 Missense_Mutation p.T692S 0.41 tolerated(0.31) benign(0.044) TCGA-AZ-6598-01 10 96014737 96014737 C T PLCE1 Missense_Mutation p.A1162V 0.36 tolerated(0.22) benign(0.017) TCGA-AZ-6598-01 10 96087806 96087808 TGA - PLCE1 3'UTR 0.28 TCGA-AZ-6598-01 10 96116977 96116977 A G NOC3L Silent p.P154P 0.23 TCGA-AZ-6598-01 10 96796831 96796832 - A CYP2C8 3'UTR 0.32 TCGA-AZ-6598-01 10 97919914 97919914 C T ZNF518A RNA 0.46 TCGA-AZ-6598-01 10 97922614 97922614 T - ZNF518A RNA 0.35 TCGA-AZ-6598-01 10 98741350 98741350 G A C10orf12 Missense_Mutation p.R68H 0.23 tolerated(1) benign(0) TCGA-AZ-6598-01 10 99019156 99019156 C T ARHGAP19 Intron 0.37 TCGA-AZ-6598-01 10 99080594 99080594 C T FRAT1 3'UTR 0.41 TCGA-AZ-6598-01 10 99338023 99338023 C T ANKRD2 Silent p.S99S 0.10 TCGA-AZ-6598-01 10 99510176 99510177 - G ZFYVE27 Frame_Shift_Ins p.K254Efs*31 0.28 TCGA-AZ-6598-01 11 101341918 101341918 T A TRPC6 Missense_Mutation p.N802I 0.09 tolerated(0.14) probably_damaging(0.997) TCGA-AZ-6598-01 11 101341987 101341987 T A TRPC6 Missense_Mutation p.K779M 0.09 tolerated(0.11) possibly_damaging(0.759) TCGA-AZ-6598-01 11 101834560 101834560 C - KIAA1377 Frame_Shift_Del p.L933Yfs*21 0.30 TCGA-AZ-6598-01 11 102743627 102743627 C - MMP12 RNA 0.28 TCGA-AZ-6598-01 11 102743659 102743659 C T MMP12 RNA 0.38 TCGA-AZ-6598-01 11 102826177 102826177 G T MMP13 Missense_Mutation p.L56M 0.35 tolerated(0.25) benign(0.029) TCGA-AZ-6598-01 11 103870863 103870863 C A PDGFD Missense_Mutation p.R82L 0.05 deleterious(0.01) possibly_damaging(0.664) TCGA-AZ-6598-01 11 103907882 103907882 A T DDI1 Missense_Mutation p.H111L 0.35 tolerated(0.3) benign(0.016) TCGA-AZ-6598-01 11 104877870 104877870 C T CASP5 Missense_Mutation p.A138T 0.39 tolerated(0.05) possibly_damaging(0.614) TCGA-AZ-6598-01 11 10647620 10647620 G A MRVI1 Missense_Mutation p.R421C 0.42 tolerated(0.12) benign(0.031) TCGA-AZ-6598-01 11 108114817 108114817 T - ATM Frame_Shift_Del p.S214Pfs*16 0.33 TCGA-AZ-6598-01 11 109294666 109294666 C T C11orf87 Missense_Mutation p.R103W 0.40 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 11 111889696 111889697 - TGG DIXDC1 In_Frame_Ins p.D662_A663insG 0.28 TCGA-AZ-6598-01 11 113283526 113283526 G T DRD2 Missense_Mutation p.P297H 0.41 tolerated(0.06) benign(0.014) TCGA-AZ-6598-01 11 113563949 113563949 T C TMPRSS5 Missense_Mutation p.S270G 0.33 tolerated(0.07) benign(0.143) TCGA-AZ-6598-01 11 113815320 113815320 C A HTR3B Silent p.A311A 0.21 TCGA-AZ-6598-01 11 11400703 11400703 C A GALNT18 Missense_Mutation p.R235M 0.43 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 11 117186264 117186264 C T BACE1 Missense_Mutation p.S83N 0.34 deleterious(0) possibly_damaging(0.449) TCGA-AZ-6598-01 11 117280480 117280480 G A CEP164 Missense_Mutation p.A1299T 0.39 tolerated(0.34) benign(0.228) TCGA-AZ-6598-01 11 117329509 117329509 C T DSCAML1 Missense_Mutation p.V1237I 0.31 tolerated(0.07) probably_damaging(0.984) TCGA-AZ-6598-01 11 117389380 117389380 G - DSCAML1 Frame_Shift_Del p.T498Rfs*33 0.31 TCGA-AZ-6598-01 11 117651318 117651318 T C DSCAML1 Missense_Mutation p.Y145C 0.44 tolerated(0.06) probably_damaging(0.987) TCGA-AZ-6598-01 11 118359396 118359396 T C KMT2A Missense_Mutation p.L1467P 0.44 probably_damaging(0.949) TCGA-AZ-6598-01 11 118368731 118368731 A G KMT2A Silent p.E1915E 0.40 TCGA-AZ-6598-01 11 118376203 118376203 T - KMT2A Frame_Shift_Del p.L3200Wfs*15 0.24 TCGA-AZ-6598-01 11 118402867 118402868 - G TMEM25 Frame_Shift_Ins p.E27Gfs*13 0.24 TCGA-AZ-6598-01 11 118403848 118403848 G A TMEM25 Missense_Mutation p.R200H 0.47 tolerated(0.27) benign(0.002) TCGA-AZ-6598-01 11 118764686 118764686 G A CXCR5 Missense_Mutation p.V145M 0.45 deleterious(0.03) probably_damaging(0.996) TCGA-AZ-6598-01 11 118765342 118765343 AG - CXCR5 Frame_Shift_Del p.N365Cfs*46 0.30 TCGA-AZ-6598-01 11 118943994 118943994 G T VPS11 Missense_Mutation p.S323I 0.42 deleterious(0) probably_damaging(0.975) TCGA-AZ-6598-01 11 118997791 118997791 G A HINFP Missense_Mutation p.G46D 0.47 deleterious(0.01) benign(0.003) TCGA-AZ-6598-01 11 119003387 119003387 C T HINFP Silent p.C257C 0.42 TCGA-AZ-6598-01 11 119044621 119044621 G A NLRX1 Silent p.T221T 0.34 TCGA-AZ-6598-01 11 119053878 119053878 G - NLRX1 Frame_Shift_Del p.G888Vfs*13 0.34 TCGA-AZ-6598-01 11 119058010 119058010 G A PDZD3 Missense_Mutation p.R121Q 0.52 tolerated(0.99) benign(0.184) TCGA-AZ-6598-01 11 119205973 119205973 G A RNF26 Silent p.P47P 0.39 TCGA-AZ-6598-01 11 119209954 119209954 G - C1QTNF5 3'UTR 0.28 TCGA-AZ-6598-01 11 120099746 120099746 G A OAF Silent p.T239T 0.44 TCGA-AZ-6598-01 11 120099977 120099977 G A OAF 3'UTR 0.20 TCGA-AZ-6598-01 11 121031011 121031011 C T TECTA Silent p.C1619C 0.14 TCGA-AZ-6598-01 11 121383726 121383726 T C SORL1 Silent p.S318S 0.34 TCGA-AZ-6598-01 11 122944357 122944357 C T CLMP Missense_Mutation p.R316Q 0.31 tolerated(0.2) benign(0.017) TCGA-AZ-6598-01 11 123810673 123810673 T C OR4D5 Missense_Mutation p.V117A 0.36 tolerated(0.05) benign(0.138) TCGA-AZ-6598-01 11 123994461 123994461 C T VWA5A Missense_Mutation p.P372S 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-AZ-6598-01 11 124489453 124489453 C T PANX3 Silent p.S267S 0.37 TCGA-AZ-6598-01 11 124742833 124742833 C T ROBO3 Silent p.L462L 0.47 TCGA-AZ-6598-01 11 124952142 124952142 C T SLC37A2 Silent p.G296G 0.41 TCGA-AZ-6598-01 11 124955356 124955356 C T SLC37A2 Silent p.G438G 0.43 TCGA-AZ-6598-01 11 125831760 125831760 C T CDON Missense_Mutation p.A1164T 0.48 tolerated(1) benign(0) TCGA-AZ-6598-01 11 126134415 126134415 G A SRPR Silent p.D515D 0.31 TCGA-AZ-6598-01 11 126162674 126162674 A G TIRAP Missense_Mutation p.T124A 0.28 tolerated(1) benign(0.001) TCGA-AZ-6598-01 11 126276235 126276235 G A ST3GAL4 Intron 0.43 TCGA-AZ-6598-01 11 126301121 126301121 G A KIRREL3 Intron 0.44 TCGA-AZ-6598-01 11 1265418 1265419 CA - MUC5B Frame_Shift_Del p.T2437Rfs*10 0.11 TCGA-AZ-6598-01 11 1267455 1267455 G A MUC5B Silent p.T3115T 0.42 TCGA-AZ-6598-01 11 126870474 126870474 C T KIRREL3 5'UTR 0.43 TCGA-AZ-6598-01 11 1276324 1276324 G A MUC5B Missense_Mutation p.A5240T 0.43 unknown(0) TCGA-AZ-6598-01 11 128642778 128642778 G A FLI1 Missense_Mutation p.D163N 0.16 tolerated(0.09) benign(0.155) TCGA-AZ-6598-01 11 128709226 128709226 G A KCNJ1 Missense_Mutation p.R324C 0.37 deleterious(0) probably_damaging(0.964) TCGA-AZ-6598-01 11 12883845 12883845 C T TEAD1 Missense_Mutation p.T84M 0.44 deleterious(0) possibly_damaging(0.864) TCGA-AZ-6598-01 11 130068300 130068300 C T ST14 Silent p.D519D 0.48 TCGA-AZ-6598-01 11 133789708 133789708 C T IGSF9B Silent p.T1304T 0.28 TCGA-AZ-6598-01 11 133807828 133807828 G T IGSF9B Silent p.P146P 0.36 TCGA-AZ-6598-01 11 134238676 134238676 G A GLB1L2 Splice_Site p.X343_splice 0.36 TCGA-AZ-6598-01 11 134257466 134257466 C T B3GAT1 Missense_Mutation p.A30T 0.42 tolerated_low_confidence(1) benign(0.005) TCGA-AZ-6598-01 11 1466880 1466880 C - BRSK2 Frame_Shift_Del p.R401Gfs*4 0.34 TCGA-AZ-6598-01 11 15247283 15247283 G A INSC Missense_Mutation p.C407Y 0.48 deleterious(0) probably_damaging(0.994) TCGA-AZ-6598-01 11 1606389 1606389 A G KRTAP5-1 Missense_Mutation p.C31R 0.10 unknown(0) TCGA-AZ-6598-01 11 17170311 17170311 T C PIK3C2A Missense_Mutation p.I451V 0.35 tolerated(0.1) probably_damaging(0.998) TCGA-AZ-6598-01 11 17408443 17408444 - G KCNJ11 3'UTR 0.29 TCGA-AZ-6598-01 11 18253969 18253969 C T SAA4 Missense_Mutation p.G68E 0.46 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 11 18591869 18591869 A G UEVLD Silent p.A83A 0.44 TCGA-AZ-6598-01 11 197618 197618 C - ODF3 Frame_Shift_Del p.M58Cfs*15 0.39 TCGA-AZ-6598-01 11 19955389 19955389 A - NAV2 Frame_Shift_Del p.K558Sfs*35 0.29 TCGA-AZ-6598-01 11 20652329 20652329 G A SLC6A5 Missense_Mutation p.R531H 0.40 tolerated(0.06) benign(0.231) TCGA-AZ-6598-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.25 TCGA-AZ-6598-01 11 30032950 30032950 G A KCNA4 Nonsense_Mutation p.Q426* 0.47 TCGA-AZ-6598-01 11 31822330 31822330 A G PAX6 Silent p.D158D 0.39 TCGA-AZ-6598-01 11 33123726 33123726 T - CSTF3 Frame_Shift_Del p.R275Efs*40 0.31 TCGA-AZ-6598-01 11 34477595 34477595 C T CAT Missense_Mutation p.A250V 0.38 deleterious(0) possibly_damaging(0.903) TCGA-AZ-6598-01 11 35282347 35282348 - T SLC1A2 3'UTR 0.41 TCGA-AZ-6598-01 11 36599722 36599722 A T RAG1 3'UTR 0.30 TCGA-AZ-6598-01 11 36600436 36600436 G A RAG1 3'UTR 0.40 TCGA-AZ-6598-01 11 3660980 3660980 G - ART5 Frame_Shift_Del p.H227Mfs*18 0.30 TCGA-AZ-6598-01 11 3681478 3681478 C - ART1 Frame_Shift_Del p.F246Lfs*6 0.38 TCGA-AZ-6598-01 11 372672 372672 G A B4GALNT4 Missense_Mutation p.R89Q 0.26 tolerated(0.99) benign(0.02) TCGA-AZ-6598-01 11 372875 372875 C T B4GALNT4 Silent p.H124H 0.31 TCGA-AZ-6598-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.31 TCGA-AZ-6598-01 11 420990 420992 ATG - ANO9 In_Frame_Del p.I481del 0.27 TCGA-AZ-6598-01 11 43923082 43923082 G A ALKBH3 Missense_Mutation p.R159H 0.40 tolerated(0.15) benign(0.001) TCGA-AZ-6598-01 11 43964661 43964661 G - C11orf96 Frame_Shift_Del p.V384Cfs*39 0.30 TCGA-AZ-6598-01 11 44286427 44286427 C T ALX4 Missense_Mutation p.A405T 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-6598-01 11 45949725 45949725 C - GYLTL1B Intron 0.36 TCGA-AZ-6598-01 11 4621937 4621937 G A TRIM68 Missense_Mutation p.R343C 0.38 tolerated(0.16) possibly_damaging(0.901) TCGA-AZ-6598-01 11 46394178 46394178 A G DGKZ Missense_Mutation p.Y529C 0.36 deleterious(0.01) probably_damaging(1) TCGA-AZ-6598-01 11 46529902 46529902 G A AMBRA1 Silent p.Y636Y 0.45 TCGA-AZ-6598-01 11 46726301 46726301 C T ZNF408 Nonsense_Mutation p.R351* 0.53 TCGA-AZ-6598-01 11 46726492 46726492 C T ZNF408 Silent p.C414C 0.34 TCGA-AZ-6598-01 11 4674158 4674158 C T OR51E1 Silent p.R134R 0.46 TCGA-AZ-6598-01 11 46897068 46897068 G A LRP4 Silent p.L1288L 0.44 TCGA-AZ-6598-01 11 47183064 47183064 G A C11orf49 Missense_Mutation p.A297T 0.30 tolerated_low_confidence(0.59) benign(0.001) TCGA-AZ-6598-01 11 47374209 47374209 G A MYBPC3 5'UTR 0.45 TCGA-AZ-6598-01 11 47594820 47594821 TC - KBTBD4 Frame_Shift_Del p.E422Dfs*23 0.28 TCGA-AZ-6598-01 11 47594883 47594883 C - KBTBD4 Frame_Shift_Del p.E402Rfs*27 0.26 TCGA-AZ-6598-01 11 47595137 47595137 C T KBTBD4 Missense_Mutation p.C317Y 0.29 tolerated(1) probably_damaging(0.929) TCGA-AZ-6598-01 11 47690415 47690415 T G AGBL2 Missense_Mutation p.H731P 0.06 deleterious(0) possibly_damaging(0.905) TCGA-AZ-6598-01 11 47741529 47741529 G A FNBP4 Missense_Mutation p.S972L 0.42 tolerated(0.69) benign(0.002) TCGA-AZ-6598-01 11 47746195 47746195 G - FNBP4 Frame_Shift_Del p.P715Hfs*26 0.36 TCGA-AZ-6598-01 11 533573 533573 G A HRAS Silent p.P110P 0.38 TCGA-AZ-6598-01 11 5530400 5530400 G - UBQLN3 Frame_Shift_Del p.P130Lfs*5 0.36 TCGA-AZ-6598-01 11 55371421 55371421 A T OR4C11 Silent p.I143I 0.41 TCGA-AZ-6598-01 11 55607071 55607071 G A OR5D16 Missense_Mutation p.V282M 0.38 deleterious(0.02) possibly_damaging(0.529) TCGA-AZ-6598-01 11 55703485 55703485 G C OR5I1 Missense_Mutation p.P131R 0.58 deleterious(0) benign(0.206) TCGA-AZ-6598-01 11 56184940 56184940 A G OR5R1 Missense_Mutation p.F257L 0.20 deleterious(0) probably_damaging(0.996) TCGA-AZ-6598-01 11 56309868 56309868 T C OR5M11 Missense_Mutation p.Y289C 0.46 deleterious(0.01) possibly_damaging(0.452) TCGA-AZ-6598-01 11 56310625 56310625 C T OR5M11 Missense_Mutation p.V37I 0.38 tolerated(1) benign(0.001) TCGA-AZ-6598-01 11 56468211 56468211 C T OR9G1 Silent p.A116A 0.26 TCGA-AZ-6598-01 11 57177425 57177425 C T SLC43A3 Silent p.A410A 0.14 TCGA-AZ-6598-01 11 57177555 57177555 G C SLC43A3 Missense_Mutation p.P367R 0.40 tolerated(0.18) possibly_damaging(0.793) TCGA-AZ-6598-01 11 57427374 57427374 C T CLP1 Silent p.G142G 0.16 TCGA-AZ-6598-01 11 5758069 5758069 C T OR56B1 Missense_Mutation p.A108V 0.40 tolerated(1) benign(0.045) TCGA-AZ-6598-01 11 58962827 58962827 C - DTX4 Frame_Shift_Del p.G510Afs*35 0.29 TCGA-AZ-6598-01 11 58978643 58978643 C T MPEG1 Missense_Mutation p.A566T 0.45 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 11 59634002 59634002 C A TCN1 5'UTR 0.39 TCGA-AZ-6598-01 11 59992462 59992462 C T MS4A4E Intron 0.36 TCGA-AZ-6598-01 11 6048060 6048060 G T OR56A1 Missense_Mutation p.P292H 0.08 deleterious(0) probably_damaging(0.947) TCGA-AZ-6598-01 11 60535051 60535051 G A MS4A15 Missense_Mutation p.V91M 0.09 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 11 60643026 60643026 C A ZP1 Missense_Mutation p.A605E 0.30 deleterious(0.05) benign(0.025) TCGA-AZ-6598-01 11 60701069 60701069 G - TMEM132A Frame_Shift_Del p.V474Cfs*16 0.29 TCGA-AZ-6598-01 11 60711292 60711292 G T SLC15A3 Missense_Mutation p.R289S 0.37 tolerated(0.82) benign(0.038) TCGA-AZ-6598-01 11 60776229 60776229 G - CD6 Frame_Shift_Del p.A233Pfs*35 0.41 TCGA-AZ-6598-01 11 608472 608472 A C PHRF1 Missense_Mutation p.K1005Q 0.37 tolerated(0.33) possibly_damaging(0.895) TCGA-AZ-6598-01 11 61042035 61042035 C T VWCE Missense_Mutation p.R506Q 0.33 tolerated(0.36) benign(0.042) TCGA-AZ-6598-01 11 61197616 61197616 A - SDHAF2 5'UTR p.M1? 0.34 TCGA-AZ-6598-01 11 61249302 61249302 G - PPP1R32 Frame_Shift_Del p.V9Sfs*6 0.19 TCGA-AZ-6598-01 11 61916284 61916284 C T INCENP Missense_Mutation p.A786V 0.42 tolerated(0.08) benign(0.119) TCGA-AZ-6598-01 11 62299270 62299270 C T AHNAK Nonsense_Mutation p.W873* 0.42 TCGA-AZ-6598-01 11 62491764 62491764 G T HNRNPUL2 Missense_Mutation p.R225S 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-AZ-6598-01 11 62557412 62557412 G A TMEM179B Missense_Mutation p.V185M 0.40 tolerated(0.26) benign(0.03) TCGA-AZ-6598-01 11 62567729 62567729 G T NXF1 Intron 0.68 TCGA-AZ-6598-01 11 6281198 6281198 G T CCKBR Nonsense_Mutation p.G14* 0.45 TCGA-AZ-6598-01 11 63277972 63277972 A G LGALS12 Missense_Mutation p.H200R 0.10 tolerated(0.33) benign(0.142) TCGA-AZ-6598-01 11 6340527 6340527 C T PRKCDBP Missense_Mutation p.A218T 0.37 tolerated_low_confidence(0.23) benign(0.054) TCGA-AZ-6598-01 11 63488089 63488089 C T RTN3 Silent p.D705D 0.42 TCGA-AZ-6598-01 11 63883718 63883718 C T FLRT1 5'UTR 0.41 TCGA-AZ-6598-01 11 63886075 63886079 TTTTC - FLRT1 3'UTR 0.15 TCGA-AZ-6598-01 11 63886565 63886565 A G FLRT1 3'UTR 0.08 TCGA-AZ-6598-01 11 64082505 64082505 T C ESRRA Missense_Mutation p.S259P 0.37 deleterious(0.04) probably_damaging(0.989) TCGA-AZ-6598-01 11 64112253 64112253 A G CCDC88B Missense_Mutation p.E747G 0.27 deleterious(0.01) benign(0.424) TCGA-AZ-6598-01 11 64509526 64509526 G - RASGRP2 Frame_Shift_Del p.W45Gfs*29 0.36 TCGA-AZ-6598-01 11 64621904 64621904 C T EHD1 Silent p.A502A 0.37 TCGA-AZ-6598-01 11 64662599 64662599 C - ATG2A Frame_Shift_Del p.G1888Afs*2 0.29 TCGA-AZ-6598-01 11 64787960 64787960 G A ARL2 Missense_Mutation p.A137T 0.43 deleterious(0.04) benign(0.002) TCGA-AZ-6598-01 11 64811986 64811986 G A SAC3D1 Silent p.R288R 0.41 TCGA-AZ-6598-01 11 64897773 64897773 G T SYVN1 Missense_Mutation p.P395Q 0.44 tolerated(0.63) unknown(0) TCGA-AZ-6598-01 11 64940406 64940407 - A SPDYC Frame_Shift_Ins p.N258Kfs*? 0.25 TCGA-AZ-6598-01 11 65293113 65293113 G A SCYL1 Silent p.V60V 0.51 TCGA-AZ-6598-01 11 65307731 65307731 T G LTBP3 Missense_Mutation p.S1077R 0.50 tolerated(0.44) benign(0.221) TCGA-AZ-6598-01 11 65320986 65320986 G - LTBP3 Frame_Shift_Del p.L294Sfs*94 0.36 TCGA-AZ-6598-01 11 65386484 65386484 G A PCNXL3 Missense_Mutation p.A551T 0.67 tolerated(0.11) possibly_damaging(0.876) TCGA-AZ-6598-01 11 65388396 65388396 C T PCNXL3 Nonsense_Mutation p.Q732* 0.47 TCGA-AZ-6598-01 11 65403741 65403741 C - PCNXL3 Frame_Shift_Del p.V1855Wfs*29 0.36 TCGA-AZ-6598-01 11 65422046 65422046 G - RELA Frame_Shift_Del p.H487Tfs*7 0.29 TCGA-AZ-6598-01 11 6568834 6568834 G A DNHD1 Missense_Mutation p.R2222H 0.55 possibly_damaging(0.512) TCGA-AZ-6598-01 11 65688801 65688801 C - DRAP1 Frame_Shift_Del p.P173Rfs*45 0.38 TCGA-AZ-6598-01 11 65771178 65771178 G A BANF1 Missense_Mutation p.A69T 0.40 deleterious(0.01) probably_damaging(1) TCGA-AZ-6598-01 11 65822749 65822749 C T SF3B2 Missense_Mutation p.A154V 0.41 deleterious_low_confidence(0.01) benign(0.117) TCGA-AZ-6598-01 11 66026154 66026155 CT - KLC2 Frame_Shift_Del p.L31Afs*15 0.34 TCGA-AZ-6598-01 11 66033434 66033434 G T KLC2 Missense_Mutation p.R518L 0.41 deleterious_low_confidence(0.04) benign(0.032) TCGA-AZ-6598-01 11 66238748 66238748 G A PELI3 Missense_Mutation p.R87H 0.48 deleterious(0) possibly_damaging(0.708) TCGA-AZ-6598-01 11 66241271 66241271 C A PELI3 Missense_Mutation p.L239M 0.30 tolerated(0.05) probably_damaging(0.998) TCGA-AZ-6598-01 11 66299309 66299309 G - BBS1 Intron 0.30 TCGA-AZ-6598-01 11 66330535 66330535 C T CTSF 3'Flank 0.43 TCGA-AZ-6598-01 11 6643253 6643253 G - DCHS1 Frame_Shift_Del p.K3219Sfs*176 0.41 TCGA-AZ-6598-01 11 6644242 6644242 G A DCHS1 Missense_Mutation p.R2889W 0.44 deleterious(0) possibly_damaging(0.889) TCGA-AZ-6598-01 11 6647443 6647443 G A DCHS1 Missense_Mutation p.A2178V 0.49 deleterious(0.01) probably_damaging(0.949) TCGA-AZ-6598-01 11 6661724 6661725 - G DCHS1 Frame_Shift_Ins p.Q374Pfs*4 0.26 TCGA-AZ-6598-01 11 66807421 66807421 C - SYT12 Frame_Shift_Del p.Y125Mfs*13 0.38 TCGA-AZ-6598-01 11 67187062 67187062 G T CARNS1 Silent p.L319L 0.49 TCGA-AZ-6598-01 11 67209168 67209169 GG - CORO1B Intron 0.42 TCGA-AZ-6598-01 11 67260980 67260980 C T PITPNM1 Silent p.S1081S 0.39 TCGA-AZ-6598-01 11 67786361 67786361 A C ALDH3B1 Silent p.A130A 0.26 TCGA-AZ-6598-01 11 68549421 68549421 G A CPT1A Silent p.P390P 0.42 TCGA-AZ-6598-01 11 70049563 70049563 G A FADD 5'UTR 0.40 TCGA-AZ-6598-01 11 70332918 70332918 G A SHANK2 Silent p.G1161G 0.48 TCGA-AZ-6598-01 11 71850486 71850486 C A FOLR3 Silent p.T193T 0.20 TCGA-AZ-6598-01 11 71952331 71952331 G T PHOX2A Missense_Mutation p.P74T 0.45 deleterious(0.01) possibly_damaging(0.908) TCGA-AZ-6598-01 11 720583 720583 C T EPS8L2 Intron 0.09 TCGA-AZ-6598-01 11 72408966 72408966 C T ARAP1 Silent p.L909L 0.40 TCGA-AZ-6598-01 11 73008546 73008546 G A P2RY6 Missense_Mutation p.R328H 0.41 tolerated_low_confidence(0.15) benign(0.001) TCGA-AZ-6598-01 11 73387618 73387618 T C RAB6A 3'UTR 0.40 TCGA-AZ-6598-01 11 73611453 73611453 G T PAAF1 Missense_Mutation p.G174C 0.46 deleterious(0) probably_damaging(0.951) TCGA-AZ-6598-01 11 73716913 73716913 G T UCP3 Missense_Mutation p.Q135K 0.50 deleterious(0) probably_damaging(0.984) TCGA-AZ-6598-01 11 75134812 75134812 C - KLHL35 Frame_Shift_Del p.G496Vfs*3 0.32 TCGA-AZ-6598-01 11 75148037 75148037 G A GDPD5 Missense_Mutation p.A538V 0.30 tolerated(0.3) benign(0.252) TCGA-AZ-6598-01 11 75316964 75316964 G A MAP6 Missense_Mutation p.A402V 0.43 tolerated(1) benign(0.001) TCGA-AZ-6598-01 11 7618836 7618836 C A PPFIBP2 Silent p.R140R 0.52 TCGA-AZ-6598-01 11 76751851 76751851 G A B3GNT6 3'UTR 0.38 TCGA-AZ-6598-01 11 78368952 78368952 A - TENM4 3'UTR 0.53 TCGA-AZ-6598-01 11 78468025 78468025 G A TENM4 Missense_Mutation p.P861S 0.47 tolerated(1) benign(0.005) TCGA-AZ-6598-01 11 78775931 78775931 G A TENM4 Silent p.A115A 0.29 TCGA-AZ-6598-01 11 8118919 8118919 C T TUB Missense_Mutation p.R333W 0.41 deleterious(0) probably_damaging(0.994) TCGA-AZ-6598-01 11 82443513 82443514 - C FAM181B Frame_Shift_Ins p.E420Gfs*17 0.32 TCGA-AZ-6598-01 11 82444448 82444448 C T FAM181B Missense_Mutation p.M108I 0.57 tolerated(0.87) benign(0.216) TCGA-AZ-6598-01 11 82644474 82644474 G T C11orf82 Missense_Mutation p.Q698H 0.44 deleterious(0.03) possibly_damaging(0.838) TCGA-AZ-6598-01 11 8284897 8284897 C A LMO1 Missense_Mutation p.D5Y 0.44 deleterious(0.01) benign(0.365) TCGA-AZ-6598-01 11 86382834 86382834 G A ME3 Silent p.Y51Y 0.50 TCGA-AZ-6598-01 11 87883013 87883013 T C RAB38 Missense_Mutation p.K105E 0.11 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 11 88242043 88242043 G A GRM5 Missense_Mutation p.P1119L 0.46 deleterious_low_confidence(0) benign(0.173) TCGA-AZ-6598-01 11 8940948 8940948 G T AKIP1 Missense_Mutation p.G185V 0.44 deleterious(0.01) probably_damaging(0.947) TCGA-AZ-6598-01 11 89896814 89896814 T - NAALAD2 Intron 0.28 TCGA-AZ-6598-01 11 92532276 92532276 G - FAT3 Frame_Shift_Del p.V2034Sfs*21 0.24 TCGA-AZ-6598-01 11 92535041 92535041 C T FAT3 Silent p.S2954S 0.42 TCGA-AZ-6598-01 11 92600371 92600371 G - FAT3 Frame_Shift_Del 0.31 TCGA-AZ-6598-01 11 93433125 93433125 A G KIAA1731 Missense_Mutation p.S1683G 0.37 tolerated(0.18) benign(0.026) TCGA-AZ-6598-01 11 93821996 93821996 G A HEPHL1 Missense_Mutation p.C719Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-AZ-6598-01 11 94730807 94730807 A - KDM4D Frame_Shift_Del p.K93Rfs*4 0.45 TCGA-AZ-6598-01 11 95712685 95712685 C A MAML2 Missense_Mutation p.W966C 0.39 unknown(0) TCGA-AZ-6598-01 11 95825227 95825228 - TGC MAML2 In_Frame_Ins p.Q665dup 0.18 TCGA-AZ-6598-01 11 96117368 96117368 T - CCDC82 Frame_Shift_Del p.R182Efs*7 0.30 TCGA-AZ-6598-01 12 103696127 103696127 G A C12orf42 Missense_Mutation p.A281V 0.10 tolerated(0.05) benign(0.249) TCGA-AZ-6598-01 12 104083647 104083647 G A STAB2 Silent p.L1023L 0.31 TCGA-AZ-6598-01 12 104341603 104341603 T - HSP90B1 3'UTR 0.28 TCGA-AZ-6598-01 12 104520007 104520007 A G NFYB Missense_Mutation p.M39T 0.57 tolerated(0.62) benign(0.007) TCGA-AZ-6598-01 12 104697825 104697825 G A EID3 Missense_Mutation p.R38H 0.12 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 12 105420463 105420463 A C ALDH1L2 Missense_Mutation p.V859G 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-AZ-6598-01 12 105583595 105583595 T C APPL2 Missense_Mutation p.N478D 0.49 deleterious(0.05) probably_damaging(0.999) TCGA-AZ-6598-01 12 106460825 106460825 C T NUAK1 Missense_Mutation p.D581N 0.29 deleterious(0.02) possibly_damaging(0.783) TCGA-AZ-6598-01 12 10758831 10758831 C A MAGOHB 3'UTR 0.60 TCGA-AZ-6598-01 12 108105966 108105966 G A PWP1 Missense_Mutation p.S492N 0.59 tolerated_low_confidence(0.75) benign(0.087) TCGA-AZ-6598-01 12 109041041 109041041 G A CORO1C 3'UTR 0.28 TCGA-AZ-6598-01 12 109192871 109192871 T - SSH1 Frame_Shift_Del p.A419Hfs*5 0.37 TCGA-AZ-6598-01 12 109306262 109306262 C - SVOP 3'UTR 0.15 TCGA-AZ-6598-01 12 109696138 109696138 C T ACACB Missense_Mutation p.A2110V 0.14 deleterious(0) possibly_damaging(0.899) TCGA-AZ-6598-01 12 110246228 110246228 G - TRPV4 Frame_Shift_Del p.I145Sfs*30 0.44 TCGA-AZ-6598-01 12 110383069 110383069 C T GIT2 Missense_Mutation p.R576Q 0.63 tolerated(0.12) benign(0.006) TCGA-AZ-6598-01 12 110777161 110777161 A G ATP2A2 Missense_Mutation p.T499A 0.09 tolerated(0.19) benign(0.003) TCGA-AZ-6598-01 12 111089043 111089043 G A HVCN1 Missense_Mutation p.R208W 0.69 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 12 111701596 111701596 C T CUX2 Missense_Mutation p.A85V 0.56 deleterious(0) benign(0.063) TCGA-AZ-6598-01 12 111785997 111785997 A G CUX2 Silent p.G1443G 0.30 TCGA-AZ-6598-01 12 112171751 112171751 A G ACAD10 Silent p.P504P 0.29 TCGA-AZ-6598-01 12 112228337 112228337 G A ALDH2 Missense_Mutation p.A218T 0.22 deleterious(0.03) possibly_damaging(0.759) TCGA-AZ-6598-01 12 112622798 112622798 C T HECTD4 Silent p.S3178S 0.37 TCGA-AZ-6598-01 12 112667503 112667503 T C HECTD4 Missense_Mutation p.Q2027R 0.16 possibly_damaging(0.884) TCGA-AZ-6598-01 12 113758440 113758440 G A SLC8B1 Silent p.L158L 0.15 TCGA-AZ-6598-01 12 114803999 114803999 C T TBX5 Missense_Mutation p.S318N 0.14 tolerated(0.1) benign(0) TCGA-AZ-6598-01 12 115110004 115110004 C T TBX3 Missense_Mutation p.R625H 0.44 tolerated(0.07) benign(0.019) TCGA-AZ-6598-01 12 116445223 116445223 T C MED13L Missense_Mutation p.K744R 0.27 tolerated(0.07) unknown(0) TCGA-AZ-6598-01 12 117158168 117158168 C T C12orf49 Missense_Mutation p.G118D 0.60 tolerated(0.15) possibly_damaging(0.71) TCGA-AZ-6598-01 12 117593620 117593620 C T FBXO21 Missense_Mutation p.G558S 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 12 120031752 120031752 G T TMEM233 Missense_Mutation p.M33I 0.25 tolerated(0.26) benign(0.01) TCGA-AZ-6598-01 12 12022875 12022875 G A ETV6 Silent p.E327E 0.33 TCGA-AZ-6598-01 12 120751014 120751015 - T SIRT4 3'UTR 0.50 TCGA-AZ-6598-01 12 121431481 121431481 C T HNF1A Nonsense_Mutation p.R229* 0.24 TCGA-AZ-6598-01 12 121861315 121861315 G A RNF34 Missense_Mutation p.R353H 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 12 121879990 121879991 CA - KDM2B Frame_Shift_Del p.C1085Hfs*14 0.45 TCGA-AZ-6598-01 12 122248416 122248416 C T SETD1B Missense_Mutation p.S522L 0.27 benign(0.373) TCGA-AZ-6598-01 12 122265697 122265697 C T SETD1B Silent p.F1799F 0.53 TCGA-AZ-6598-01 12 122691188 122691188 C T B3GNT4 Silent p.H130H 0.62 TCGA-AZ-6598-01 12 123075950 123075950 C T KNTC1 Missense_Mutation p.R1399C 0.32 tolerated(0.11) benign(0) TCGA-AZ-6598-01 12 123201076 123201076 G A HCAR3 Missense_Mutation p.A70V 0.50 tolerated(0.17) probably_damaging(1) TCGA-AZ-6598-01 12 123351785 123351785 G - VPS37B Frame_Shift_Del p.R246Afs*91 0.23 TCGA-AZ-6598-01 12 123461645 123461645 G A OGFOD2 Intron 0.48 TCGA-AZ-6598-01 12 123679029 123679029 A G MPHOSPH9 Silent p.S563S 0.21 TCGA-AZ-6598-01 12 124104069 124104069 T C DDX55 Missense_Mutation p.V475A 0.53 tolerated(0.63) benign(0.003) TCGA-AZ-6598-01 12 124343784 124343784 G A DNAH10 Missense_Mutation p.V2122I 0.54 benign(0.104) TCGA-AZ-6598-01 12 124796410 124796410 G A FAM101A Missense_Mutation p.R4Q 0.66 tolerated(0.07) possibly_damaging(0.861) TCGA-AZ-6598-01 12 12483197 12483197 T C MANSC1 Missense_Mutation p.T354A 0.61 deleterious(0.05) benign(0.029) TCGA-AZ-6598-01 12 124846753 124846753 G A NCOR2 Missense_Mutation p.P1007S 0.57 possibly_damaging(0.804) TCGA-AZ-6598-01 12 124856681 124856681 G A NCOR2 Silent p.G898G 0.55 TCGA-AZ-6598-01 12 12630873 12630875 TCT - DUSP16 In_Frame_Del p.K297del 0.31 TCGA-AZ-6598-01 12 130184704 130184705 - G TMEM132D Frame_Shift_Ins p.T207Hfs*29 0.39 TCGA-AZ-6598-01 12 130649314 130649318 TTCTT - FZD10 3'UTR 0.11 TCGA-AZ-6598-01 12 132262742 132262742 A - SFSWAP Frame_Shift_Del p.K760Sfs*63 0.23 TCGA-AZ-6598-01 12 132394804 132394804 T - ULK1 Frame_Shift_Del p.H274Ifs*109 0.21 TCGA-AZ-6598-01 12 132403157 132403157 C A ULK1 Silent p.P814P 0.62 TCGA-AZ-6598-01 12 132502120 132502120 C A EP400 Missense_Mutation p.L1322M 0.58 unknown(0) TCGA-AZ-6598-01 12 132510279 132510279 C T EP400 Silent p.G1648G 0.20 TCGA-AZ-6598-01 12 133219807 133219808 CA - POLE Splice_Site p.X1517_splice 0.41 TCGA-AZ-6598-01 12 133236001 133236001 G A POLE Missense_Mutation p.T1052M 0.23 deleterious(0) probably_damaging(0.981) TCGA-AZ-6598-01 12 133384816 133384816 G A GOLGA3 Missense_Mutation p.A280V 0.58 tolerated_low_confidence(0.37) benign(0.002) TCGA-AZ-6598-01 12 133430078 133430078 G A CHFR Silent p.G449G 0.31 TCGA-AZ-6598-01 12 133733074 133733074 C A ZNF10 Nonsense_Mutation p.Y414* 0.59 TCGA-AZ-6598-01 12 14959085 14959085 C T SMCO3 Missense_Mutation p.R177H 0.61 tolerated(0.54) benign(0.003) TCGA-AZ-6598-01 12 15699475 15699475 T - PTPRO Intron 0.53 TCGA-AZ-6598-01 12 1943478 1943478 G - LRTM2 Frame_Shift_Del p.K237Rfs*68 0.26 TCGA-AZ-6598-01 12 1943723 1943723 G A LRTM2 Missense_Mutation p.V317M 0.64 deleterious(0) probably_damaging(0.991) TCGA-AZ-6598-01 12 2017060 2017060 G - CACNA2D4 Frame_Shift_Del p.T211Pfs*11 0.21 TCGA-AZ-6598-01 12 20522442 20522442 C T PDE3A Missense_Mutation p.A75V 0.65 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-AZ-6598-01 12 21196303 21196303 G A SLCO1B7 Missense_Mutation p.V208I 0.57 deleterious(0.04) possibly_damaging(0.722) TCGA-AZ-6598-01 12 22199377 22199377 C T CMAS Missense_Mutation p.A47V 0.54 deleterious(0) probably_damaging(0.985) TCGA-AZ-6598-01 12 23716202 23716202 C A SOX5 Missense_Mutation p.R493L 0.09 tolerated(0.1) probably_damaging(0.909) TCGA-AZ-6598-01 12 24736562 24736562 A - LINC00477 RNA 0.38 TCGA-AZ-6598-01 12 248378 248378 G A IQSEC3 Missense_Mutation p.A617T 0.11 tolerated(0.29) possibly_damaging(0.821) TCGA-AZ-6598-01 12 26572065 26572065 C A ITPR2 Missense_Mutation p.D2343Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 12 2676738 2676738 C - CACNA1C Frame_Shift_Del p.T558Rfs*16 0.45 TCGA-AZ-6598-01 12 2676851 2676851 G A CACNA1C Missense_Mutation p.V596M 0.52 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 12 2676917 2676917 G A CACNA1C Missense_Mutation p.V618M 0.37 deleterious(0.01) possibly_damaging(0.866) TCGA-AZ-6598-01 12 27126874 27126874 C T TM7SF3 3'UTR 0.53 TCGA-AZ-6598-01 12 27175556 27175556 T C MED21 Splice_Site p.X14_splice 0.62 TCGA-AZ-6598-01 12 27573338 27573338 C T ARNTL2 Missense_Mutation p.A595V 0.59 tolerated(0.12) benign(0.009) TCGA-AZ-6598-01 12 29469798 29469798 A - FAR2 Frame_Shift_Del p.I329Sfs*49 0.25 TCGA-AZ-6598-01 12 29493833 29493833 C T ERGIC2 3'UTR 0.14 TCGA-AZ-6598-01 12 2977856 2977856 G C FOXM1 Missense_Mutation p.S240C 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 12 2977895 2977895 G A FOXM1 Missense_Mutation p.A227V 0.15 tolerated(0.3) benign(0.002) TCGA-AZ-6598-01 12 30783722 30783722 C - IPO8 3'UTR 0.55 TCGA-AZ-6598-01 12 32134700 32134700 A G KIAA1551 Missense_Mutation p.T271A 0.09 tolerated(0.44) benign(0.015) TCGA-AZ-6598-01 12 32906951 32906951 C T YARS2 Missense_Mutation p.G283E 0.38 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 12 38714424 38714424 C T ALG10B Silent p.G277G 0.59 TCGA-AZ-6598-01 12 39745580 39745580 T - KIF21A Frame_Shift_Del p.R558Gfs*42 0.28 TCGA-AZ-6598-01 12 40041760 40041760 A - C12orf40 Frame_Shift_Del p.K186Sfs*19 0.24 TCGA-AZ-6598-01 12 40713870 40713870 A - LRRK2 Frame_Shift_Del p.R1639Gfs*15 0.56 TCGA-AZ-6598-01 12 41967022 41967022 G T PDZRN4 Missense_Mutation p.S814I 0.30 tolerated(0.06) benign(0.352) TCGA-AZ-6598-01 12 4398036 4398036 G A CCND2 Silent p.S200S 0.27 TCGA-AZ-6598-01 12 44161948 44161948 C T IRAK4 Missense_Mutation p.R12C 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 12 46342306 46342306 T - SCAF11 Frame_Shift_Del p.K104Nfs*3 0.10 TCGA-AZ-6598-01 12 4796345 4796345 G A NDUFA9 3'UTR 0.57 TCGA-AZ-6598-01 12 48090084 48090084 C T RPAP3 Missense_Mutation p.A174T 0.49 deleterious(0) probably_damaging(0.989) TCGA-AZ-6598-01 12 48528050 48528050 G A PFKM Missense_Mutation p.R281H 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 12 4920386 4920386 C T KCNA6 Silent p.A393A 0.25 TCGA-AZ-6598-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.24 TCGA-AZ-6598-01 12 49424178 49424178 G - KMT2D Frame_Shift_Del p.T4629Pfs*11 0.27 TCGA-AZ-6598-01 12 49743155 49743155 G A DNAJC22 Missense_Mutation p.R167H 0.35 tolerated(0.12) benign(0.097) TCGA-AZ-6598-01 12 49993311 49993311 C T FAM186B Silent p.A704A 0.61 TCGA-AZ-6598-01 12 50344764 50344764 G T AQP2 Missense_Mutation p.G51C 0.53 deleterious(0) possibly_damaging(0.619) TCGA-AZ-6598-01 12 50452898 50452898 C A ASIC1 Missense_Mutation p.L117M 0.63 deleterious(0.03) possibly_damaging(0.582) TCGA-AZ-6598-01 12 50475485 50475485 G - ASIC1 3'UTR 0.21 TCGA-AZ-6598-01 12 50501452 50501452 G A GPD1 Missense_Mutation p.A239T 0.30 tolerated(0.1) benign(0.016) TCGA-AZ-6598-01 12 50586297 50586297 G A LIMA1 Missense_Mutation p.P361S 0.23 tolerated(0.33) benign(0.004) TCGA-AZ-6598-01 12 51173954 51173954 C T ATF1 Missense_Mutation p.T9M 0.06 deleterious_low_confidence(0.02) benign(0.181) TCGA-AZ-6598-01 12 51674966 51674966 G A BIN2 3'UTR 0.36 TCGA-AZ-6598-01 12 52080230 52080230 G A SCN8A Silent p.S158S 0.58 TCGA-AZ-6598-01 12 52115401 52115401 G A SCN8A Silent p.R569R 0.31 TCGA-AZ-6598-01 12 52306155 52306155 A - ACVRL1 Intron 0.16 TCGA-AZ-6598-01 12 52306962 52306962 G T ACVRL1 Silent p.R47R 0.31 TCGA-AZ-6598-01 12 52695751 52695751 C T KRT86 Silent p.A17A 0.30 TCGA-AZ-6598-01 12 52818474 52818474 C A KRT75 Missense_Mutation p.G495C 0.25 tolerated(0.06) unknown(0) TCGA-AZ-6598-01 12 52867298 52867298 C - KRT6C Frame_Shift_Del p.G75Afs*71 0.28 TCGA-AZ-6598-01 12 53004411 53004411 C T KRT73 Missense_Mutation p.G440D 0.73 deleterious(0) probably_damaging(0.973) TCGA-AZ-6598-01 12 53453145 53453145 G A TENC1 Missense_Mutation p.G584R 0.34 tolerated(0.11) benign(0.03) TCGA-AZ-6598-01 12 53456221 53456221 G A TENC1 Silent p.L1253L 0.67 TCGA-AZ-6598-01 12 53495842 53495842 A G IGFBP6 Missense_Mutation p.Q205R 0.27 deleterious(0.04) possibly_damaging(0.859) TCGA-AZ-6598-01 12 53607456 53607456 G - RARG Frame_Shift_Del p.P281Qfs*6 0.26 TCGA-AZ-6598-01 12 53722299 53722299 C T SP7 Silent p.S309S 0.08 TCGA-AZ-6598-01 12 53876883 53876883 G - MAP3K12 Frame_Shift_Del p.S569Hfs*45 0.19 TCGA-AZ-6598-01 12 54379705 54379705 C T HOXC10 Missense_Mutation p.A221V 0.62 tolerated(0.28) benign(0.001) TCGA-AZ-6598-01 12 54385527 54385527 G A RP11-834C11.12 Intron 0.34 TCGA-AZ-6598-01 12 54757252 54757252 A G GPR84 Silent p.F128F 0.48 TCGA-AZ-6598-01 12 54765265 54765265 T C ZNF385A Missense_Mutation p.H219R 0.59 deleterious(0) probably_damaging(0.973) TCGA-AZ-6598-01 12 55421902 55421902 T C NEUROD4 3'UTR 0.54 TCGA-AZ-6598-01 12 5603720 5603720 C - NTF3 Frame_Shift_Del p.P128Rfs*45 0.20 TCGA-AZ-6598-01 12 56230708 56230708 C T MMP19 3'UTR 0.55 TCGA-AZ-6598-01 12 56345818 56345818 G T DGKA Splice_Site p.X530_splice 0.33 TCGA-AZ-6598-01 12 56350906 56350906 G A PMEL Missense_Mutation p.T394I 0.33 deleterious(0.01) possibly_damaging(0.662) TCGA-AZ-6598-01 12 56881809 56881809 G T GLS2 Missense_Mutation p.L32I 0.67 tolerated_low_confidence(0.15) benign(0.045) TCGA-AZ-6598-01 12 57003693 57003693 G A BAZ2A Missense_Mutation p.P642L 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6598-01 12 57422603 57422603 C T MYO1A Missense_Mutation p.G1023D 0.66 tolerated(0.47) benign(0.012) TCGA-AZ-6598-01 12 57573865 57573865 T C LRP1 Missense_Mutation p.M1726T 0.25 benign(0.034) TCGA-AZ-6598-01 12 57579502 57579502 C T LRP1 Missense_Mutation p.R2218C 0.49 benign(0.326) TCGA-AZ-6598-01 12 57581234 57581234 C T LRP1 Silent p.C2342C 0.59 TCGA-AZ-6598-01 12 57595335 57595335 C - LRP1 Frame_Shift_Del p.R3469Gfs*24 0.26 TCGA-AZ-6598-01 12 57598418 57598418 G A LRP1 Missense_Mutation p.V3694M 0.23 benign(0.015) TCGA-AZ-6598-01 12 57606300 57606300 C T LRP1 Missense_Mutation p.R4533W 0.37 possibly_damaging(0.623) TCGA-AZ-6598-01 12 57648750 57648750 C - R3HDM2 Frame_Shift_Del p.D913Tfs*41 0.41 TCGA-AZ-6598-01 12 57920934 57920934 C - MBD6 Frame_Shift_Del p.P671Lfs*4 0.33 TCGA-AZ-6598-01 12 57970645 57970645 C T KIF5A Missense_Mutation p.T767I 0.56 tolerated(0.32) benign(0.376) TCGA-AZ-6598-01 12 58025102 58025103 - C B4GALNT1 Frame_Shift_Ins p.L89Pfs*13 0.53 TCGA-AZ-6598-01 12 59271267 59271267 G T LRIG3 Nonsense_Mutation p.C817* 0.56 TCGA-AZ-6598-01 12 59271482 59271483 - A LRIG3 Frame_Shift_Ins p.A746Cfs*16 0.37 TCGA-AZ-6598-01 12 6128661 6128661 C T VWF Missense_Mutation p.R1308H 0.62 tolerated(1) benign(0) TCGA-AZ-6598-01 12 64055223 64055223 T C DPY19L2 Silent p.A163A 0.26 TCGA-AZ-6598-01 12 64377821 64377821 A - SRGAP1 Frame_Shift_Del p.A57Lfs*11 0.34 TCGA-AZ-6598-01 12 6457044 6457045 - C SCNN1A Frame_Shift_Ins p.P728Afs*62 0.29 TCGA-AZ-6598-01 12 65110562 65110562 C T GNS Missense_Mutation p.G540S 0.24 tolerated_low_confidence(0.28) benign(0.002) TCGA-AZ-6598-01 12 65564122 65564122 T G LEMD3 Missense_Mutation p.L249R 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.855) TCGA-AZ-6598-01 12 662877 662877 C A B4GALNT3 Silent p.A596A 0.33 TCGA-AZ-6598-01 12 667249 667249 G A B4GALNT3 Missense_Mutation p.V868M 0.21 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 12 6760123 6760123 G A ING4 3'UTR 0.38 TCGA-AZ-6598-01 12 67706721 67706721 T - CAND1 3'UTR 0.48 TCGA-AZ-6598-01 12 68053116 68053116 C T DYRK2 3'UTR 0.64 TCGA-AZ-6598-01 12 68054759 68054759 C - DYRK2 3'UTR 0.36 TCGA-AZ-6598-01 12 6805636 6805636 A G PIANP Missense_Mutation p.V193A 0.18 tolerated(0.23) benign(0.294) TCGA-AZ-6598-01 12 69129079 69129079 C T NUP107 Silent p.N819N 0.60 TCGA-AZ-6598-01 12 69652684 69652684 C T CPSF6 Silent p.L337L 0.25 TCGA-AZ-6598-01 12 7045189 7045189 C - ATN1 Frame_Shift_Del p.P255Hfs*43 0.44 TCGA-AZ-6598-01 12 70760686 70760686 T C KCNMB4 Missense_Mutation p.S58P 0.54 tolerated(0.05) benign(0.011) TCGA-AZ-6598-01 12 71314248 71314248 G A PTPRR 5'UTR 0.32 TCGA-AZ-6598-01 12 7177335 7177335 C T C1S Missense_Mutation p.P483S 0.60 tolerated(0.15) possibly_damaging(0.612) TCGA-AZ-6598-01 12 72038781 72038781 T - ZFC3H1 Frame_Shift_Del p.K385Nfs*9 0.42 TCGA-AZ-6598-01 12 72068080 72068080 T A THAP2 Missense_Mutation p.F57I 0.55 deleterious(0.01) probably_damaging(0.991) TCGA-AZ-6598-01 12 7242010 7242010 G - C1R Frame_Shift_Del p.P215Lfs*100 0.30 TCGA-AZ-6598-01 12 72667275 72667275 G A TRHDE Silent p.A239A 0.61 TCGA-AZ-6598-01 12 7310122 7310122 C T CLSTN3 Silent p.C855C 0.30 TCGA-AZ-6598-01 12 74933691 74933691 A T ATXN7L3B 3'UTR 0.63 TCGA-AZ-6598-01 12 75601697 75601697 G A KCNC2 Missense_Mutation p.R23C 0.19 deleterious(0) probably_damaging(0.988) TCGA-AZ-6598-01 12 78362482 78362482 G T NAV3 Missense_Mutation p.S224I 0.15 deleterious(0) possibly_damaging(0.584) TCGA-AZ-6598-01 12 78582421 78582421 C T NAV3 Silent p.S1951S 0.23 TCGA-AZ-6598-01 12 80747147 80747147 G A OTOGL Missense_Mutation p.R1808Q 0.61 tolerated(0.59) benign(0.001) TCGA-AZ-6598-01 12 81013229 81013231 CAA - PTPRQ In_Frame_Del p.T1764del 0.50 TCGA-AZ-6598-01 12 81101947 81101947 G A MYF6 Missense_Mutation p.R150Q 0.59 tolerated(0.05) benign(0.286) TCGA-AZ-6598-01 12 81657114 81657114 C T PPFIA2 Missense_Mutation p.R1204H 0.66 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-AZ-6598-01 12 8212549 8212549 G A C3AR1 Missense_Mutation p.S78L 0.64 tolerated(0.07) benign(0.115) TCGA-AZ-6598-01 12 8758079 8758079 G A AICDA Silent p.N53N 0.28 TCGA-AZ-6598-01 12 88910244 88910244 G A KITLG Silent p.S129S 0.52 TCGA-AZ-6598-01 12 9016514 9016514 C T A2ML1 Silent p.S1209S 0.56 TCGA-AZ-6598-01 12 9085340 9085340 G A PHC1 Silent p.Q429Q 0.35 TCGA-AZ-6598-01 12 9252012 9252012 C T A2M Missense_Mutation p.A556T 0.57 tolerated(0.29) benign(0.098) TCGA-AZ-6598-01 12 94641745 94641745 C T PLXNC1 Missense_Mutation p.R819C 0.34 tolerated(0.18) possibly_damaging(0.717) TCGA-AZ-6598-01 12 94761911 94761911 T C CCDC41 Missense_Mutation p.K372R 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-AZ-6598-01 12 95911790 95911790 A - USP44 3'UTR 0.53 TCGA-AZ-6598-01 12 96052911 96052911 G T NTN4 Missense_Mutation p.P613H 0.13 deleterious(0.01) probably_damaging(0.93) TCGA-AZ-6598-01 12 96356239 96356239 C A AMDHD1 Missense_Mutation p.T307N 0.56 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 12 96389547 96389547 C T HAL Missense_Mutation p.V48M 0.65 deleterious_low_confidence(0.04) benign(0.148) TCGA-AZ-6598-01 12 977110 977110 C T WNK1 Intron 0.32 TCGA-AZ-6598-01 12 98927837 98927837 C T TMPO Missense_Mutation p.A601V 0.61 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-AZ-6598-01 13 100154009 100154009 A - TM9SF2 Frame_Shift_Del p.K52Rfs*9 0.29 TCGA-AZ-6598-01 13 100617940 100617940 G T ZIC5 Silent p.S561S 0.25 TCGA-AZ-6598-01 13 101763504 101763504 C T NALCN Missense_Mutation p.V756M 0.25 tolerated(0.12) benign(0.09) TCGA-AZ-6598-01 13 101944429 101944429 A G NALCN Missense_Mutation p.V320A 0.23 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 13 103384746 103384746 G A CCDC168 Nonsense_Mutation p.Q1472* 0.32 TCGA-AZ-6598-01 13 103441412 103441412 G T KDELC1 Missense_Mutation p.L415M 0.16 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 13 103514874 103514874 G A BIVM-ERCC5 Missense_Mutation p.A885T 0.21 tolerated_low_confidence(0.87) benign(0.013) TCGA-AZ-6598-01 13 103698579 103698579 T C SLC10A2 Silent p.K317K 0.20 TCGA-AZ-6598-01 13 108861081 108861081 G A LIG4 Missense_Mutation p.R846W 0.51 deleterious(0) probably_damaging(0.992) TCGA-AZ-6598-01 13 110817255 110817256 - G COL4A1 Frame_Shift_Ins p.G1369Rfs*33 0.33 TCGA-AZ-6598-01 13 114469097 114469097 C T TMEM255B Missense_Mutation p.S19L 0.32 tolerated(0.26) benign(0.019) TCGA-AZ-6598-01 13 20411844 20411844 T - ZMYM5 Frame_Shift_Del p.G331Efs*14 0.20 TCGA-AZ-6598-01 13 20411914 20411914 C T ZMYM5 Missense_Mutation p.S307N 0.21 tolerated(0.09) benign(0.383) TCGA-AZ-6598-01 13 21245138 21245139 - G IFT88 Frame_Shift_Ins p.S746Lfs*10 0.23 TCGA-AZ-6598-01 13 21371049 21371049 C T XPO4 Missense_Mutation p.V824I 0.33 tolerated(0.26) benign(0.053) TCGA-AZ-6598-01 13 22084195 22084195 G A MICU2 Missense_Mutation p.R237C 0.27 deleterious(0.04) benign(0.002) TCGA-AZ-6598-01 13 23905382 23905382 T G SACS Missense_Mutation p.E4211D 0.21 benign(0.334) TCGA-AZ-6598-01 13 25670802 25670802 A - PABPC3 Frame_Shift_Del p.M158* 0.25 TCGA-AZ-6598-01 13 27847178 27847178 C - RASL11A Frame_Shift_Del p.Q94Rfs*72 0.24 TCGA-AZ-6598-01 13 28519580 28519580 G A ATP5EP2 3'UTR 0.08 TCGA-AZ-6598-01 13 28519601 28519601 A G ATP5EP2 3'UTR 0.13 TCGA-AZ-6598-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.16 TCGA-AZ-6598-01 13 28537278 28537278 C - CDX2 Frame_Shift_Del p.V306Cfs*2 0.33 TCGA-AZ-6598-01 13 28942784 28942784 C T FLT1 Intron 0.16 TCGA-AZ-6598-01 13 29599559 29599559 C T MTUS2 Missense_Mutation p.R252C 0.33 tolerated(0.3) benign(0.002) TCGA-AZ-6598-01 13 32813960 32813960 G A FRY Missense_Mutation p.R2210Q 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6598-01 13 33629261 33629261 T C KL Missense_Mutation p.Y470H 0.16 deleterious(0.01) possibly_damaging(0.81) TCGA-AZ-6598-01 13 33635062 33635062 C A KL Missense_Mutation p.L616M 0.25 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 13 33635593 33635594 - A KL Frame_Shift_Ins p.L796Afs*7 0.13 TCGA-AZ-6598-01 13 33635615 33635615 C G KL Missense_Mutation p.T800S 0.49 tolerated(1) benign(0.146) TCGA-AZ-6598-01 13 35685096 35685096 C T NBEA Silent p.G661G 0.22 TCGA-AZ-6598-01 13 35738589 35738591 CAT - NBEA In_Frame_Del p.I1395del 0.17 TCGA-AZ-6598-01 13 36050943 36050943 C A NBEA Intron 0.23 TCGA-AZ-6598-01 13 36382405 36382405 C G DCLK1 Missense_Mutation p.D607H 0.17 deleterious(0) probably_damaging(0.934) TCGA-AZ-6598-01 13 36748988 36748988 G T SOHLH2 Nonsense_Mutation p.C297* 0.07 TCGA-AZ-6598-01 13 37007342 37007342 G T CCNA1 Missense_Mutation p.R94M 0.13 deleterious(0.03) possibly_damaging(0.468) TCGA-AZ-6598-01 13 38154034 38154035 - A POSTN Frame_Shift_Ins p.K542* 0.38 TCGA-AZ-6598-01 13 39261558 39261558 C A FREM2 Missense_Mutation p.P26Q 0.39 tolerated_low_confidence(0.61) benign(0.068) TCGA-AZ-6598-01 13 39425172 39425172 A G FREM2 Silent p.Q2223Q 0.36 TCGA-AZ-6598-01 13 41134792 41134792 G A FOXO1 Missense_Mutation p.S279F 0.27 deleterious(0.01) benign(0.34) TCGA-AZ-6598-01 13 41515416 41515417 TA - ELF1 Frame_Shift_Del p.I299Kfs*2 0.19 TCGA-AZ-6598-01 13 41706152 41706152 G A KBTBD6 Nonsense_Mutation p.R166* 0.52 TCGA-AZ-6598-01 13 43543247 43543247 A G EPSTI1 Missense_Mutation p.L105P 0.11 deleterious(0) probably_damaging(0.994) TCGA-AZ-6598-01 13 44717818 44717818 A - SMIM2 3'UTR 0.28 TCGA-AZ-6598-01 13 46277494 46277495 - T SPERT Intron 0.29 TCGA-AZ-6598-01 13 46357622 46357622 C T SIAH3 Missense_Mutation p.V236I 0.09 tolerated(0.21) benign(0.079) TCGA-AZ-6598-01 13 46658416 46658416 A - CPB2 Frame_Shift_Del p.F71Lfs*2 0.22 TCGA-AZ-6598-01 13 46930592 46930592 G A KIAA0226L Silent p.A435A 0.34 TCGA-AZ-6598-01 13 47127688 47127688 G - LRCH1 Frame_Shift_Del p.G54Afs*6 0.28 TCGA-AZ-6598-01 13 50279819 50279819 T - KPNA3 Frame_Shift_Del p.N437Tfs*3 0.31 TCGA-AZ-6598-01 13 50589658 50589658 A G KCNRG Missense_Mutation p.N10S 0.23 tolerated(0.12) possibly_damaging(0.609) TCGA-AZ-6598-01 13 53418624 53418624 A T PCDH8 3'UTR 0.23 TCGA-AZ-6598-01 13 53420216 53420216 C - PCDH8 Frame_Shift_Del p.A786Pfs*151 0.32 TCGA-AZ-6598-01 13 53421571 53421571 C T PCDH8 Missense_Mutation p.R334H 0.11 deleterious(0.02) benign(0.114) TCGA-AZ-6598-01 13 61987857 61987858 - C PCDH20 Frame_Shift_Ins p.L126Tfs*30 0.14 TCGA-AZ-6598-01 13 67800833 67800833 A - PCDH9 Frame_Shift_Del p.F580Lfs*14 0.20 TCGA-AZ-6598-01 13 75884203 75884203 C T TBC1D4 Missense_Mutation p.G823E 0.28 tolerated(0.32) benign(0.099) TCGA-AZ-6598-01 13 77595830 77595830 G A FBXL3 Missense_Mutation p.R56W 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-AZ-6598-01 13 78492443 78492443 G A EDNRB Missense_Mutation p.P179L 0.29 tolerated(0.21) benign(0.002) TCGA-AZ-6598-01 13 79189645 79189645 A - RNF219 3'UTR 0.13 TCGA-AZ-6598-01 13 79191120 79191120 T - RNF219 Frame_Shift_Del p.N259Ifs*9 0.25 TCGA-AZ-6598-01 13 84455508 84455509 - T SLITRK1 Frame_Shift_Ins p.F47Lfs*30 0.18 TCGA-AZ-6598-01 13 88330334 88330334 C - SLITRK5 Frame_Shift_Del p.H899Ifs*27 0.21 TCGA-AZ-6598-01 13 92345610 92345611 - T GPC5 Frame_Shift_Ins p.D168* 0.26 TCGA-AZ-6598-01 13 95050833 95050833 G A GPC6 Missense_Mutation p.R468H 0.50 deleterious(0) possibly_damaging(0.802) TCGA-AZ-6598-01 13 96743468 96743468 G A HS6ST3 Missense_Mutation p.G118S 0.24 tolerated_low_confidence(0.13) benign(0.041) TCGA-AZ-6598-01 13 98043657 98043657 A G MBNL2 3'UTR 0.23 TCGA-AZ-6598-01 13 99338504 99338504 G A SLC15A1 Silent p.T625T 0.34 TCGA-AZ-6598-01 14 100182190 100182190 G T CYP46A1 Missense_Mutation p.S246I 0.32 deleterious(0) probably_damaging(0.996) TCGA-AZ-6598-01 14 101004833 101004833 G A BEGAIN Missense_Mutation p.R419C 0.50 deleterious(0) probably_damaging(0.975) TCGA-AZ-6598-01 14 101012995 101012995 G A BEGAIN Silent p.L7L 0.54 TCGA-AZ-6598-01 14 101349151 101349151 C T RTL1 Missense_Mutation p.G659R 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-AZ-6598-01 14 101350010 101350010 G A RTL1 Silent p.P372P 0.53 TCGA-AZ-6598-01 14 102445749 102445749 C T DYNC1H1 Silent p.Y146Y 0.41 TCGA-AZ-6598-01 14 102471173 102471173 G T DYNC1H1 Missense_Mutation p.E1708D 0.41 possibly_damaging(0.686) TCGA-AZ-6598-01 14 102843109 102843109 C T TECPR2 Silent p.Y17Y 0.32 TCGA-AZ-6598-01 14 102901117 102901117 A G TECPR2 Missense_Mutation p.S655G 0.13 tolerated_low_confidence(0.15) benign(0.002) TCGA-AZ-6598-01 14 102918838 102918838 C T TECPR2 Missense_Mutation p.R1172C 0.36 tolerated(0.12) benign(0.004) TCGA-AZ-6598-01 14 102963444 102963444 G T TECPR2 Missense_Mutation p.W1306C 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 14 103396361 103396361 G T AMN Missense_Mutation p.G315V 0.10 deleterious(0.03) benign(0.424) TCGA-AZ-6598-01 14 103438289 103438289 C A CDC42BPB Missense_Mutation p.Q617H 0.41 tolerated(0.1) probably_damaging(0.971) TCGA-AZ-6598-01 14 104641681 104641681 C T KIF26A Silent p.D852D 0.15 TCGA-AZ-6598-01 14 105054103 105054103 C - C14orf180 Frame_Shift_Del p.S46Pfs*3 0.34 TCGA-AZ-6598-01 14 105168005 105168005 C T INF2 Silent p.C101C 0.65 TCGA-AZ-6598-01 14 105209529 105209529 G A ADSSL1 Splice_Site p.X401_splice 0.35 TCGA-AZ-6598-01 14 105270608 105270608 C T ZBTB42 3'UTR 0.34 TCGA-AZ-6598-01 14 105417238 105417238 T C AHNAK2 Missense_Mutation p.D1517G 0.65 possibly_damaging(0.525) TCGA-AZ-6598-01 14 105614481 105614481 G - JAG2 Frame_Shift_Del p.G741Afs*21 0.45 TCGA-AZ-6598-01 14 105617099 105617099 A G JAG2 Missense_Mutation p.Y482H 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-6598-01 14 105935818 105935818 G A MTA1 Missense_Mutation p.G610R 0.15 tolerated(0.06) possibly_damaging(0.721) TCGA-AZ-6598-01 14 19553775 19553775 G - POTEG Frame_Shift_Del p.G121Efs*46 0.15 TCGA-AZ-6598-01 14 20216509 20216509 G A OR4Q3 Missense_Mutation p.G308D 0.46 deleterious(0.03) benign(0) TCGA-AZ-6598-01 14 21526158 21526158 A G RNASE8 Missense_Mutation p.Q36R 0.22 tolerated(0.13) benign(0.397) TCGA-AZ-6598-01 14 21992981 21992981 C T SALL2 Missense_Mutation p.R294Q 0.44 tolerated(0.23) probably_damaging(0.99) TCGA-AZ-6598-01 14 23240045 23240045 A G OXA1L Missense_Mutation p.D349G 0.28 tolerated(0.11) benign(0.01) TCGA-AZ-6598-01 14 23344655 23344655 C T LRP10 Silent p.G166G 0.46 TCGA-AZ-6598-01 14 23513071 23513071 G A PSMB11 3'UTR 0.21 TCGA-AZ-6598-01 14 23855521 23855521 T C MYH6 Intron 0.14 TCGA-AZ-6598-01 14 23858217 23858217 G A MYH6 Silent p.C1342C 0.44 TCGA-AZ-6598-01 14 24524997 24524997 A G LRRC16B Missense_Mutation p.T257A 0.38 tolerated(0.3) benign(0.011) TCGA-AZ-6598-01 14 24600705 24600705 G - RP11-468E2.6 Frame_Shift_Del p.G168Afs*15 0.63 TCGA-AZ-6598-01 14 24600933 24600933 G A RP11-468E2.6 Missense_Mutation p.R242H 0.39 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-AZ-6598-01 14 24737099 24737099 G T RABGGTA Missense_Mutation p.L405M 0.13 deleterious(0.01) probably_damaging(0.961) TCGA-AZ-6598-01 14 24786194 24786194 C T LTB4R 3'UTR 0.45 TCGA-AZ-6598-01 14 24837614 24837614 C - NFATC4 Frame_Shift_Del p.P88Rfs*69 0.35 TCGA-AZ-6598-01 14 24884812 24884812 C - NYNRIN Frame_Shift_Del p.A1288Rfs*152 0.33 TCGA-AZ-6598-01 14 27066542 27066542 G - NOVA1 Frame_Shift_Del p.P34Lfs*19 0.42 TCGA-AZ-6598-01 14 29237003 29237003 A C FOXG1 Missense_Mutation p.E173A 0.34 tolerated(0.15) unknown(0) TCGA-AZ-6598-01 14 29237013 29237013 C T FOXG1 Silent p.N176N 0.40 TCGA-AZ-6598-01 14 29237228 29237228 A G FOXG1 Missense_Mutation p.D248G 0.37 deleterious(0.04) probably_damaging(0.986) TCGA-AZ-6598-01 14 29261325 29261326 - A C14orf23 Frame_Shift_Ins p.T122Nfs*15 0.08 TCGA-AZ-6598-01 14 33291901 33291901 C A AKAP6 Missense_Mutation p.L1628I 0.38 deleterious(0) probably_damaging(0.996) TCGA-AZ-6598-01 14 35245128 35245128 A - BAZ1A Frame_Shift_Del p.S944Qfs*34 0.28 TCGA-AZ-6598-01 14 35262064 35262064 A - BAZ1A Frame_Shift_Del p.F476Sfs*3 0.37 TCGA-AZ-6598-01 14 35331423 35331423 T - BAZ1A Frame_Shift_Del p.A74Qfs*12 0.38 TCGA-AZ-6598-01 14 35649922 35649922 A T KIAA0391 Missense_Mutation p.D405V 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-AZ-6598-01 14 35872383 35872383 A G NFKBIA Missense_Mutation p.S174P 0.39 tolerated(0.25) possibly_damaging(0.632) TCGA-AZ-6598-01 14 36005056 36005057 - T INSM2 Frame_Shift_Ins p.S536* 0.43 TCGA-AZ-6598-01 14 36005556 36005556 T - INSM2 3'UTR 0.36 TCGA-AZ-6598-01 14 36986442 36986442 G A NKX2-1 3'UTR 0.53 TCGA-AZ-6598-01 14 38723814 38723814 G A CLEC14A Missense_Mutation p.R472W 0.13 deleterious_low_confidence(0.04) benign(0.007) TCGA-AZ-6598-01 14 39502289 39502289 C T SEC23A 3'UTR 0.39 TCGA-AZ-6598-01 14 39565124 39565124 G A SEC23A Missense_Mutation p.R67C 0.45 deleterious(0) probably_damaging(0.911) TCGA-AZ-6598-01 14 39868655 39868656 - A FBXO33 3'UTR 0.33 TCGA-AZ-6598-01 14 52186959 52186959 G A FRMD6 Missense_Mutation p.R404Q 0.43 tolerated(0.09) benign(0.048) TCGA-AZ-6598-01 14 54896992 54896992 A - CNIH1 Frame_Shift_Del p.Y132Tfs*6 0.32 TCGA-AZ-6598-01 14 55515197 55515197 A - SOCS4 3'UTR 0.25 TCGA-AZ-6598-01 14 55817461 55817461 A - FBXO34 Frame_Shift_Del p.I120Lfs*13 0.26 TCGA-AZ-6598-01 14 57046779 57046779 G - TMEM260 Frame_Shift_Del p.G51Efs*6 0.33 TCGA-AZ-6598-01 14 59112895 59112895 C - DACT1 Frame_Shift_Del p.P520Rfs*60 0.31 TCGA-AZ-6598-01 14 59951346 59951346 G A JKAMP Intron 0.40 TCGA-AZ-6598-01 14 60600965 60600965 A G PCNXL4 3'UTR 0.40 TCGA-AZ-6598-01 14 62242911 62242912 TT - SNAPC1 Frame_Shift_Del p.F213* 0.16 TCGA-AZ-6598-01 14 63511946 63511946 G - KCNH5 5'UTR 0.31 TCGA-AZ-6598-01 14 63784472 63784472 C T GPHB5 RNA 0.45 TCGA-AZ-6598-01 14 64464023 64464023 A G SYNE2 Missense_Mutation p.T1053A 0.47 benign(0.027) TCGA-AZ-6598-01 14 64580246 64580246 C T SYNE2 Missense_Mutation p.A4266V 0.24 benign(0.392) TCGA-AZ-6598-01 14 64586326 64586326 A G SYNE2 Missense_Mutation p.Q4341R 0.29 possibly_damaging(0.828) TCGA-AZ-6598-01 14 65008482 65008482 C T HSPA2 Silent p.F305F 0.39 TCGA-AZ-6598-01 14 67579760 67579760 G - GPHN Frame_Shift_Del p.E501Nfs*21 0.28 TCGA-AZ-6598-01 14 68248234 68248234 C T ZFYVE26 Nonsense_Mutation p.W1462* 0.55 TCGA-AZ-6598-01 14 68260334 68260334 T G ZFYVE26 Missense_Mutation p.E848D 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-AZ-6598-01 14 68282752 68282752 G A ZFYVE26 5'UTR 0.32 TCGA-AZ-6598-01 14 72176112 72176112 C T SIPA1L1 Silent p.G1334G 0.45 TCGA-AZ-6598-01 14 72196969 72196969 G A SIPA1L1 Silent p.S1625S 0.40 TCGA-AZ-6598-01 14 73445616 73445616 G A ZFYVE1 Missense_Mutation p.R458C 0.33 deleterious(0) probably_damaging(0.943) TCGA-AZ-6598-01 14 73743437 73743437 C A NUMB Missense_Mutation p.R602M 0.37 tolerated_low_confidence(0.12) benign(0.078) TCGA-AZ-6598-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.39 TCGA-AZ-6598-01 14 74706330 74706330 G - VSX2 Frame_Shift_Del p.G24Afs*17 0.34 TCGA-AZ-6598-01 14 75509082 75509083 CT - MLH3 Frame_Shift_Del p.D1127Yfs*4 0.33 TCGA-AZ-6598-01 14 75747284 75747284 A - FOS Frame_Shift_Del p.R140Gfs*22 0.33 TCGA-AZ-6598-01 14 77229004 77229004 T - VASH1 5'UTR 0.52 TCGA-AZ-6598-01 14 77229335 77229335 C T VASH1 Silent p.G57G 0.38 TCGA-AZ-6598-01 14 77229440 77229440 G A VASH1 Silent p.A92A 0.29 TCGA-AZ-6598-01 14 77715169 77715169 C T TMEM63C Silent p.S608S 0.53 TCGA-AZ-6598-01 14 77746241 77746241 C T POMT2 Missense_Mutation p.A606T 0.33 tolerated(0.1) benign(0.026) TCGA-AZ-6598-01 14 79175910 79175910 C T NRXN3 Silent p.G151G 0.36 TCGA-AZ-6598-01 14 81646600 81646600 T C GTF2A1 Missense_Mutation p.I366M 0.11 deleterious(0) benign(0.151) TCGA-AZ-6598-01 14 88707044 88707044 T C KCNK10 Intron 0.12 TCGA-AZ-6598-01 14 89628728 89628728 G A FOXN3 3'UTR 0.41 TCGA-AZ-6598-01 14 90783061 90783061 T - NRDE2 Frame_Shift_Del p.R90Gfs*69 0.29 TCGA-AZ-6598-01 14 92403302 92403302 T C FBLN5 Missense_Mutation p.N123S 0.27 tolerated(0.25) benign(0.057) TCGA-AZ-6598-01 14 92790197 92790197 G A SLC24A4 Missense_Mutation p.R8Q 0.44 tolerated_low_confidence(0.22) benign(0.002) TCGA-AZ-6598-01 14 93814524 93814524 T - COX8C 3'UTR 0.08 TCGA-AZ-6598-01 14 95574728 95574728 C T DICER1 Missense_Mutation p.R790Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 14 99864873 99864873 A - SETD3 3'UTR 0.36 TCGA-AZ-6598-01 15 101114004 101114004 T - LINS Frame_Shift_Del p.K358Nfs*23 0.28 TCGA-AZ-6598-01 15 22332413 22332413 A - RP11-69H14.6 RNA 0.45 TCGA-AZ-6598-01 15 22368999 22368999 T G OR4M2 Missense_Mutation p.C142G 0.38 tolerated(0.4) benign(0.111) TCGA-AZ-6598-01 15 22369024 22369024 G - OR4M2 Frame_Shift_Del p.G152Afs*23 0.39 TCGA-AZ-6598-01 15 27128518 27128518 G A GABRA5 Nonsense_Mutation p.W104* 0.16 TCGA-AZ-6598-01 15 27128557 27128557 G A GABRA5 Missense_Mutation p.R117H 0.38 deleterious(0.01) probably_damaging(0.959) TCGA-AZ-6598-01 15 28116337 28116337 G A OCA2 Missense_Mutation p.S736L 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 15 28517370 28517370 G A HERC2 Silent p.G358G 0.15 TCGA-AZ-6598-01 15 29386505 29386505 A G APBA2 Missense_Mutation p.K414E 0.34 deleterious(0.01) possibly_damaging(0.527) TCGA-AZ-6598-01 15 29415421 29415421 C - FAM189A1 3'UTR 0.33 TCGA-AZ-6598-01 15 30026545 30026545 G A TJP1 Silent p.A483A 0.43 TCGA-AZ-6598-01 15 31245822 31245822 T G MTMR10 Missense_Mutation p.E360A 0.45 tolerated(0.11) probably_damaging(0.998) TCGA-AZ-6598-01 15 33096526 33096526 T - FMN1 Frame_Shift_Del p.E1090Sfs*25 0.32 TCGA-AZ-6598-01 15 34064334 34064334 G A RYR3 Silent p.Q3010Q 0.46 TCGA-AZ-6598-01 15 34544565 34544565 C T SLC12A6 Missense_Mutation p.R380H 0.42 tolerated(0.07) probably_damaging(0.967) TCGA-AZ-6598-01 15 38233885 38233885 A G TMCO5A Missense_Mutation p.Y153C 0.40 deleterious(0.04) benign(0.126) TCGA-AZ-6598-01 15 40093914 40093914 C T GPR176 Missense_Mutation p.V323M 0.37 tolerated(0.16) probably_damaging(0.985) TCGA-AZ-6598-01 15 41149108 41149108 T A SPINT1 Missense_Mutation p.S509T 0.12 tolerated(0.19) possibly_damaging(0.67) TCGA-AZ-6598-01 15 41191372 41191372 C T VPS18 Missense_Mutation p.T119M 0.45 tolerated(0.15) benign(0.069) TCGA-AZ-6598-01 15 42182370 42182370 C T SPTBN5 Missense_Mutation p.V140M 0.48 probably_damaging(1) TCGA-AZ-6598-01 15 42281630 42281630 C T PLA2G4E Missense_Mutation p.R569Q 0.33 deleterious(0.03) benign(0.028) TCGA-AZ-6598-01 15 42512281 42512281 G A TMEM87A Missense_Mutation p.P486S 0.39 tolerated(0.45) probably_damaging(0.946) TCGA-AZ-6598-01 15 42681154 42681154 G T CAPN3 Missense_Mutation p.G221C 0.35 deleterious(0) probably_damaging(0.974) TCGA-AZ-6598-01 15 42686523 42686523 G A CAPN3 Missense_Mutation p.G367S 0.42 deleterious(0.02) probably_damaging(1) TCGA-AZ-6598-01 15 42856037 42856037 T C HAUS2 Silent p.A160A 0.08 TCGA-AZ-6598-01 15 43045354 43045354 G T TTBK2 Missense_Mutation p.P697H 0.19 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-AZ-6598-01 15 43571867 43571867 G T TGM7 Missense_Mutation p.P545H 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 15 43621514 43621514 G A LCMT2 Missense_Mutation p.L392F 0.31 deleterious(0.03) benign(0.016) TCGA-AZ-6598-01 15 43814912 43814912 A G MAP1A Missense_Mutation p.E414G 0.35 probably_damaging(0.999) TCGA-AZ-6598-01 15 43816966 43816966 G A MAP1A Missense_Mutation p.V1099I 0.24 possibly_damaging(0.68) TCGA-AZ-6598-01 15 44038897 44038898 - C PDIA3 Frame_Shift_Ins p.W56Lfs*11 0.38 TCGA-AZ-6598-01 15 44063402 44063402 C - PDIA3 Frame_Shift_Del p.Q502Rfs*46 0.30 TCGA-AZ-6598-01 15 44907757 44907757 C A SPG11 Missense_Mutation p.V948F 0.38 deleterious(0) benign(0.016) TCGA-AZ-6598-01 15 45398321 45398321 A G DUOX2 Splice_Site p.X716_splice 0.36 TCGA-AZ-6598-01 15 48058163 48058163 C T SEMA6D Missense_Mutation p.R509C 0.38 deleterious(0) possibly_damaging(0.762) TCGA-AZ-6598-01 15 48566773 48566773 C T SLC12A1 Missense_Mutation p.A803V 0.38 deleterious(0.04) probably_damaging(0.984) TCGA-AZ-6598-01 15 48779590 48779590 C A FBN1 Missense_Mutation p.V1128F 0.47 benign(0.098) TCGA-AZ-6598-01 15 50303099 50303099 T - ATP8B4 Frame_Shift_Del p.K126Nfs*3 0.09 TCGA-AZ-6598-01 15 52230402 52230402 T - LEO1 Frame_Shift_Del p.K651Sfs*6 0.34 TCGA-AZ-6598-01 15 52356647 52356647 C A MAPK6 Missense_Mutation p.S539Y 0.42 deleterious_low_confidence(0.05) benign(0.121) TCGA-AZ-6598-01 15 52901823 52901823 C A FAM214A Missense_Mutation p.G430C 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-AZ-6598-01 15 54614185 54614185 C T UNC13C Silent p.A1439A 0.42 TCGA-AZ-6598-01 15 56388765 56388765 G A RFX7 Silent p.D387D 0.10 TCGA-AZ-6598-01 15 56435004 56435004 G A RFX7 Missense_Mutation p.P125S 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 15 57731036 57731036 G A CGNL1 Missense_Mutation p.R280Q 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-AZ-6598-01 15 58006972 58006972 A G POLR2M 3'UTR 0.10 TCGA-AZ-6598-01 15 58007033 58007033 G A POLR2M 3'UTR 0.14 TCGA-AZ-6598-01 15 58840598 58840598 C T LIPC Missense_Mutation p.A293V 0.16 tolerated(0.09) benign(0.158) TCGA-AZ-6598-01 15 59931126 59931126 A - GTF2A2 3'UTR 0.48 TCGA-AZ-6598-01 15 63031647 63031647 G - TLN2 Frame_Shift_Del p.G1264Afs*40 0.31 TCGA-AZ-6598-01 15 63935219 63935219 T C HERC1 Silent p.G3790G 0.43 TCGA-AZ-6598-01 15 64967846 64967846 A G ZNF609 Silent p.E931E 0.35 TCGA-AZ-6598-01 15 65621392 65621392 G A IGDCC3 Missense_Mutation p.A767V 0.09 tolerated_low_confidence(0.16) possibly_damaging(0.499) TCGA-AZ-6598-01 15 65623080 65623080 C T IGDCC3 Splice_Site p.X521_splice 0.23 TCGA-AZ-6598-01 15 65748691 65748691 G A DPP8 Missense_Mutation p.R680W 0.41 deleterious(0) possibly_damaging(0.708) TCGA-AZ-6598-01 15 65771354 65771354 A - DPP8 Frame_Shift_Del p.Q458Kfs*29 0.27 TCGA-AZ-6598-01 15 66612982 66612982 T - DIS3L Frame_Shift_Del p.L414* 0.31 TCGA-AZ-6598-01 15 66840912 66840912 C T LCTL Silent p.T540T 0.21 TCGA-AZ-6598-01 15 69733189 69733189 G A KIF23 Missense_Mutation p.C717Y 0.48 tolerated(0.22) benign(0.004) TCGA-AZ-6598-01 15 72023501 72023501 C T THSD4 Silent p.Y525Y 0.11 TCGA-AZ-6598-01 15 73660551 73660551 C - HCN4 Frame_Shift_Del p.A21Pfs*211 0.11 TCGA-AZ-6598-01 15 74277686 74277686 C T STOML1 Missense_Mutation p.A255T 0.46 tolerated(0.18) benign(0.003) TCGA-AZ-6598-01 15 74324939 74324939 C T PML Silent p.A427A 0.36 TCGA-AZ-6598-01 15 74336903 74336903 G A PML Missense_Mutation p.A735T 0.12 tolerated(0.25) possibly_damaging(0.662) TCGA-AZ-6598-01 15 74429079 74429079 C - ISLR2 3'UTR 0.37 TCGA-AZ-6598-01 15 74472224 74472224 T C STRA6 3'Flank 0.46 TCGA-AZ-6598-01 15 74473156 74473156 G - STRA6 Frame_Shift_Del p.Q642Rfs*? 0.28 TCGA-AZ-6598-01 15 74884131 74884131 A G ARID3B Missense_Mutation p.M466V 0.30 tolerated(0.12) benign(0.004) TCGA-AZ-6598-01 15 75047382 75047382 G A CYP1A2 Missense_Mutation p.A502T 0.10 tolerated(0.24) benign(0.003) TCGA-AZ-6598-01 15 75189524 75189524 C - MPI Frame_Shift_Del p.P341Lfs*8 0.10 TCGA-AZ-6598-01 15 75558448 75558448 G A GOLGA6C Missense_Mutation p.E284K 0.06 tolerated(0.17) benign(0.004) TCGA-AZ-6598-01 15 75632399 75632399 G A COMMD4 3'UTR 0.44 TCGA-AZ-6598-01 15 75932201 75932201 G T IMP3 Silent p.A103A 0.35 TCGA-AZ-6598-01 15 75942664 75942664 G - SNX33 Frame_Shift_Del p.G409Afs*88 0.25 TCGA-AZ-6598-01 15 76630142 76630142 G A ISL2 Missense_Mutation p.V28M 0.10 deleterious(0.02) probably_damaging(0.982) TCGA-AZ-6598-01 15 77239798 77239798 A - RCN2 Frame_Shift_Del p.N201Mfs*36 0.39 TCGA-AZ-6598-01 15 79092765 79092765 G A ADAMTS7 Silent p.R75R 0.43 TCGA-AZ-6598-01 15 79588371 79588372 TT - ANKRD34C 3'UTR 0.28 TCGA-AZ-6598-01 15 79748932 79748932 G A KIAA1024 Missense_Mutation p.R148Q 0.38 tolerated(0.4) benign(0.037) TCGA-AZ-6598-01 15 81213377 81213377 G A KIAA1199 Missense_Mutation p.V670M 0.41 deleterious(0) probably_damaging(0.971) TCGA-AZ-6598-01 15 81625546 81625546 T C TMC3 Silent p.T839T 0.41 TCGA-AZ-6598-01 15 85166713 85166713 T C ZSCAN2 3'UTR 0.26 TCGA-AZ-6598-01 15 85186706 85186706 G - WDR73 Frame_Shift_Del p.R378Afs*25 0.32 TCGA-AZ-6598-01 15 85327314 85327314 C A ZNF592 Missense_Mutation p.P470T 0.35 tolerated(0.56) benign(0.007) TCGA-AZ-6598-01 15 85399649 85399649 T C ALPK3 Silent p.A762A 0.37 TCGA-AZ-6598-01 15 86311413 86311413 G A KLHL25 Silent p.V543V 0.11 TCGA-AZ-6598-01 15 86311513 86311513 C T KLHL25 Missense_Mutation p.R510H 0.38 tolerated(0.14) probably_damaging(0.998) TCGA-AZ-6598-01 15 86312809 86312809 C T KLHL25 Missense_Mutation p.G78D 0.49 tolerated(0.61) probably_damaging(1) TCGA-AZ-6598-01 15 86312901 86312901 G A KLHL25 Silent p.D47D 0.46 TCGA-AZ-6598-01 15 89074017 89074017 G A DET1 Missense_Mutation p.A318V 0.37 deleterious(0) probably_damaging(0.933) TCGA-AZ-6598-01 15 89450484 89450484 C T MFGE8 Missense_Mutation p.R110H 0.39 deleterious(0.04) possibly_damaging(0.872) TCGA-AZ-6598-01 15 89825005 89825005 A T FANCI Nonsense_Mutation p.K508* 0.06 TCGA-AZ-6598-01 15 89876340 89876340 A G POLG Missense_Mutation p.S216P 0.45 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 15 90784658 90784658 C A GDPGP1 Missense_Mutation p.P173H 0.46 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 15 93467718 93467718 C A CHD2 Missense_Mutation p.P77Q 0.45 tolerated(0.9) possibly_damaging(0.804) TCGA-AZ-6598-01 15 93534732 93534732 G A CHD2 Missense_Mutation p.G1147D 0.36 deleterious(0.01) probably_damaging(0.964) TCGA-AZ-6598-01 15 99454653 99454653 C T IGF1R Silent p.T524T 0.37 TCGA-AZ-6598-01 16 11141159 11141159 T - CLEC16A Frame_Shift_Del p.L611Wfs*11 0.23 TCGA-AZ-6598-01 16 11772616 11772616 T - SNN 3'UTR 0.15 TCGA-AZ-6598-01 16 11935552 11935552 T - RSL1D1 Frame_Shift_Del p.E286Rfs*45 0.34 TCGA-AZ-6598-01 16 1260601 1260601 G A CACNA1H Missense_Mutation p.V1330I 0.09 tolerated(0.13) benign(0.021) TCGA-AZ-6598-01 16 1270496 1270496 C - CACNA1H Frame_Shift_Del p.C2191Afs*26 0.34 TCGA-AZ-6598-01 16 1291218 1291218 G A TPSAB1 Nonsense_Mutation p.W42* 0.50 TCGA-AZ-6598-01 16 1400811 1400811 C T TSR3 Missense_Mutation p.V175I 0.20 tolerated(0.06) benign(0.105) TCGA-AZ-6598-01 16 14969011 14969011 G A NOMO1 Missense_Mutation p.G725S 0.39 tolerated(0.08) benign(0.242) TCGA-AZ-6598-01 16 14976452 14976452 C T NOMO1 Missense_Mutation p.P1010L 0.43 deleterious(0) probably_damaging(0.973) TCGA-AZ-6598-01 16 1497701 1497701 C A CLCN7 Missense_Mutation p.Q676H 0.14 tolerated(0.53) benign(0.045) TCGA-AZ-6598-01 16 15978038 15978038 T - FOPNL Frame_Shift_Del p.K18Rfs*4 0.35 TCGA-AZ-6598-01 16 16200718 16200718 G A ABCC1 Silent p.A953A 0.47 TCGA-AZ-6598-01 16 1716535 1716535 G A CRAMP1L Silent p.T990T 0.11 TCGA-AZ-6598-01 16 1798269 1798269 C T MAPK8IP3 Missense_Mutation p.S339F 0.38 deleterious(0) possibly_damaging(0.634) TCGA-AZ-6598-01 16 1840779 1840779 A G IGFALS Missense_Mutation p.L585P 0.44 deleterious(0) probably_damaging(0.993) TCGA-AZ-6598-01 16 18861765 18861765 T A SMG1 Missense_Mutation p.T1693S 0.39 tolerated_low_confidence(0.39) benign(0.004) TCGA-AZ-6598-01 16 19184800 19184800 C T SYT17 Missense_Mutation p.R28W 0.31 deleterious(0.05) probably_damaging(0.985) TCGA-AZ-6598-01 16 19455460 19455460 C T TMC5 Silent p.P282P 0.38 TCGA-AZ-6598-01 16 1994732 1994732 G A RPL3L 3'UTR 0.35 TCGA-AZ-6598-01 16 1997323 1997323 C T RPL3L Missense_Mutation p.G187D 0.46 deleterious(0.01) probably_damaging(1) TCGA-AZ-6598-01 16 20975247 20975247 T C DNAH3 Missense_Mutation p.Y3320C 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 16 21008781 21008781 T C DNAH3 Missense_Mutation p.D2142G 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 16 2156273 2156273 G A PKD1 Silent p.L2508L 0.47 TCGA-AZ-6598-01 16 2160326 2160326 C G PKD1 Missense_Mutation p.E1614D 0.33 probably_damaging(0.997) TCGA-AZ-6598-01 16 22285033 22285033 G A EEF2K Silent p.A617A 0.40 TCGA-AZ-6598-01 16 2230038 2230038 C T CASKIN1 Missense_Mutation p.E1111K 0.45 benign(0.01) TCGA-AZ-6598-01 16 2237387 2237387 G A CASKIN1 Silent p.C231C 0.36 TCGA-AZ-6598-01 16 22447095 22447095 T - RRN3P3 RNA 0.30 TCGA-AZ-6598-01 16 2285358 2285358 G A E4F1 Missense_Mutation p.A714T 0.12 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 16 23392217 23392217 G A SCNN1B 3'UTR 0.33 TCGA-AZ-6598-01 16 23430123 23430123 C T COG7 Silent p.T345T 0.36 TCGA-AZ-6598-01 16 23453948 23453948 C T COG7 Missense_Mutation p.A152T 0.36 tolerated(0.14) benign(0.117) TCGA-AZ-6598-01 16 23536542 23536542 T C EARS2 Intron 0.28 TCGA-AZ-6598-01 16 24582804 24582804 A - RBBP6 Frame_Shift_Del p.T1475Lfs*20 0.23 TCGA-AZ-6598-01 16 24835166 24835166 G A TNRC6A 3'UTR 0.38 TCGA-AZ-6598-01 16 2493756 2493758 AAC - CCNF In_Frame_Del p.Q297del 0.08 TCGA-AZ-6598-01 16 2498892 2498892 C T CCNF Silent p.A377A 0.47 TCGA-AZ-6598-01 16 2512631 2512631 G A C16orf59 Splice_Site p.X288_splice 0.16 TCGA-AZ-6598-01 16 25232823 25232823 C T AQP8 Silent p.I102I 0.37 TCGA-AZ-6598-01 16 25235802 25235802 C T AQP8 Silent p.A169A 0.48 TCGA-AZ-6598-01 16 25266615 25266615 C T ZKSCAN2 Silent p.A166A 0.41 TCGA-AZ-6598-01 16 27236432 27236432 C T NSMCE1 3'UTR 0.11 TCGA-AZ-6598-01 16 27268813 27268813 C T NSMCE1 Missense_Mutation p.V27M 0.47 deleterious(0.01) probably_damaging(1) TCGA-AZ-6598-01 16 27445678 27445678 C - IL21R Frame_Shift_Del p.D22Tfs*37 0.31 TCGA-AZ-6598-01 16 27802571 27802571 G A GSG1L 3'UTR 0.33 TCGA-AZ-6598-01 16 28513450 28513450 C T IL27 Silent p.P103P 0.66 TCGA-AZ-6598-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.10 TCGA-AZ-6598-01 16 28847720 28847720 G A ATXN2L Silent p.P1071P 0.38 TCGA-AZ-6598-01 16 28893790 28893790 G A ATP2A1 Missense_Mutation p.A115T 0.51 deleterious(0) benign(0.245) TCGA-AZ-6598-01 16 28916181 28916181 C A RABEP2 3'UTR 0.40 TCGA-AZ-6598-01 16 28967594 28967594 C - NFATC2IP Frame_Shift_Del p.R263Dfs*60 0.25 TCGA-AZ-6598-01 16 28995230 28995230 G A SPNS1 Missense_Mutation p.A482T 0.55 tolerated(0.05) possibly_damaging(0.754) TCGA-AZ-6598-01 16 29680118 29680118 G T SPN 3'UTR 0.16 TCGA-AZ-6598-01 16 29821017 29821017 C - MAZ Frame_Shift_Del p.P481Lfs*44 0.27 TCGA-AZ-6598-01 16 29882787 29882787 C A SEZ6L2 3'UTR 0.50 TCGA-AZ-6598-01 16 29882820 29882820 G T SEZ6L2 3'UTR 0.29 TCGA-AZ-6598-01 16 30040839 30040839 G - FAM57B Intron 0.35 TCGA-AZ-6598-01 16 30095076 30095076 G A PPP4C Missense_Mutation p.C193Y 0.09 deleterious(0) probably_damaging(0.991) TCGA-AZ-6598-01 16 30102086 30102087 - T TBX6 Frame_Shift_Ins p.A116Sfs*55 0.30 TCGA-AZ-6598-01 16 30102411 30102411 C T TBX6 Missense_Mutation p.G35D 0.51 deleterious_low_confidence(0) benign(0.322) TCGA-AZ-6598-01 16 30364285 30364285 C T CD2BP2 3'UTR 0.39 TCGA-AZ-6598-01 16 30545690 30545690 C A ZNF747 Missense_Mutation p.G104V 0.47 deleterious_low_confidence(0.05) probably_damaging(0.953) TCGA-AZ-6598-01 16 30567242 30567242 G - ZNF764 Frame_Shift_Del p.P167Lfs*52 0.28 TCGA-AZ-6598-01 16 30581228 30581228 C T ZNF688 3'UTR 0.38 TCGA-AZ-6598-01 16 30596512 30596512 T C ZNF785 Missense_Mutation p.S89G 0.47 tolerated(1) benign(0.004) TCGA-AZ-6598-01 16 3065254 3065254 A G CLDN6 3'UTR 0.41 TCGA-AZ-6598-01 16 30748665 30748665 G A SRCAP Missense_Mutation p.R2435Q 0.43 unknown(0) TCGA-AZ-6598-01 16 30792983 30792983 A - ZNF629 3'UTR 0.21 TCGA-AZ-6598-01 16 30793905 30793905 C T ZNF629 Missense_Mutation p.G582S 0.40 tolerated(1) benign(0.136) TCGA-AZ-6598-01 16 30975576 30975576 C A SETD1A Silent p.S267S 0.42 TCGA-AZ-6598-01 16 30990556 30990556 G A SETD1A Missense_Mutation p.R1150H 0.38 unknown(0) TCGA-AZ-6598-01 16 31122036 31122036 C T BCKDK Missense_Mutation p.R224C 0.41 deleterious(0.01) possibly_damaging(0.613) TCGA-AZ-6598-01 16 31196405 31196405 C T FUS Silent p.G223G 0.51 TCGA-AZ-6598-01 16 31213775 31213775 C A PYCARD Missense_Mutation p.Q79H 0.50 deleterious(0.02) benign(0.01) TCGA-AZ-6598-01 16 31499732 31499732 G A SLC5A2 Silent p.V350V 0.42 TCGA-AZ-6598-01 16 319745 319745 G A ITFG3 3'UTR 0.54 TCGA-AZ-6598-01 16 3297222 3297222 G A MEFV Missense_Mutation p.R461W 0.42 deleterious(0) probably_damaging(0.976) TCGA-AZ-6598-01 16 33020923 33020923 G A IGHV3OR16-8 Missense_Mutation p.A111T 0.44 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-AZ-6598-01 16 3350341 3350341 G A TIGD7 Missense_Mutation p.R92C 0.38 tolerated(0.14) benign(0.007) TCGA-AZ-6598-01 16 338182 338182 G A AXIN1 Silent p.D843D 0.09 TCGA-AZ-6598-01 16 3455015 3455015 G A ZNF174 Intron 0.42 TCGA-AZ-6598-01 16 3486729 3486729 G A ZNF597 Missense_Mutation p.R324C 0.41 tolerated(0.23) benign(0.2) TCGA-AZ-6598-01 16 3611718 3611718 C T NLRC3 Missense_Mutation p.R714H 0.37 tolerated(0.72) benign(0.009) TCGA-AZ-6598-01 16 3708090 3708090 G A DNASE1 3'UTR 0.26 TCGA-AZ-6598-01 16 3714147 3714147 C T TRAP1 Intron 0.44 TCGA-AZ-6598-01 16 4412704 4412704 C T CORO7 Silent p.S437S 0.33 TCGA-AZ-6598-01 16 4606536 4606536 C A C16orf96 Missense_Mutation p.P16T 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 16 46781673 46781673 G A MYLK3 Missense_Mutation p.R145C 0.35 tolerated(0.07) benign(0.001) TCGA-AZ-6598-01 16 4732912 4732912 G A MGRN1 Missense_Mutation p.A483T 0.36 tolerated_low_confidence(0.32) benign(0.005) TCGA-AZ-6598-01 16 48177913 48177913 C T ABCC12 Silent p.T61T 0.36 TCGA-AZ-6598-01 16 48218526 48218526 A G ABCC11 Missense_Mutation p.L1028P 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 16 48248903 48248903 G A ABCC11 Silent p.C379C 0.50 TCGA-AZ-6598-01 16 4934729 4934729 C T PPL Silent p.A1309A 0.46 TCGA-AZ-6598-01 16 4935981 4935981 G A PPL Missense_Mutation p.A892V 0.38 tolerated(1) benign(0) TCGA-AZ-6598-01 16 4944499 4944500 - G PPL Frame_Shift_Ins p.T455Hfs*4 0.45 TCGA-AZ-6598-01 16 49669691 49669691 C T ZNF423 Silent p.E1124E 0.30 TCGA-AZ-6598-01 16 50263145 50263145 A G PAPD5 Missense_Mutation p.N668S 0.08 tolerated_low_confidence(0.34) benign(0.001) TCGA-AZ-6598-01 16 50340965 50340965 G A ADCY7 Missense_Mutation p.R586H 0.39 deleterious(0) probably_damaging(0.961) TCGA-AZ-6598-01 16 53636074 53636074 C A RPGRIP1L Missense_Mutation p.G1288C 0.38 tolerated(0.06) benign(0.002) TCGA-AZ-6598-01 16 54966468 54966468 C T IRX5 Missense_Mutation p.A103V 0.43 deleterious(0) possibly_damaging(0.619) TCGA-AZ-6598-01 16 56660679 56660680 - A MT1E Intron 0.38 TCGA-AZ-6598-01 16 56868347 56868347 G A NUP93 Missense_Mutation p.S577N 0.28 deleterious(0.03) possibly_damaging(0.886) TCGA-AZ-6598-01 16 56899307 56899307 C T SLC12A3 Missense_Mutation p.R54C 0.39 deleterious(0) probably_damaging(0.95) TCGA-AZ-6598-01 16 56899386 56899386 G A SLC12A3 Missense_Mutation p.R80Q 0.33 tolerated(0.07) benign(0.375) TCGA-AZ-6598-01 16 57092005 57092005 G A NLRC5 Missense_Mutation p.G1259R 0.08 deleterious(0.01) benign(0.297) TCGA-AZ-6598-01 16 57092030 57092030 T G NLRC5 Missense_Mutation p.L1267R 0.22 deleterious(0) benign(0.042) TCGA-AZ-6598-01 16 57103782 57103782 G A NLRC5 Missense_Mutation p.A1512T 0.32 tolerated(0.57) benign(0.014) TCGA-AZ-6598-01 16 57486729 57486729 G A COQ9 Missense_Mutation p.G87S 0.44 tolerated(0.05) probably_damaging(0.984) TCGA-AZ-6598-01 16 57707292 57707292 G A GPR97 Missense_Mutation p.D40N 0.39 deleterious_low_confidence(0.03) benign(0.004) TCGA-AZ-6598-01 16 58030725 58030725 C T ZNF319 Missense_Mutation p.R482H 0.43 tolerated(0.12) probably_damaging(0.996) TCGA-AZ-6598-01 16 58314353 58314353 C T PRSS54 Silent p.T321T 0.37 TCGA-AZ-6598-01 16 58327694 58327694 C T PRSS54 Silent p.G9G 0.39 TCGA-AZ-6598-01 16 58589272 58589272 A G CNOT1 Missense_Mutation p.L925P 0.23 deleterious(0) probably_damaging(0.982) TCGA-AZ-6598-01 16 599132 599132 G T CAPN15 Missense_Mutation p.R530M 0.31 deleterious(0.04) benign(0.319) TCGA-AZ-6598-01 16 633553 633553 C T PIGQ Silent p.P734P 0.48 TCGA-AZ-6598-01 16 66811238 66811238 C T CCDC79 Splice_Site p.X285_splice 0.36 TCGA-AZ-6598-01 16 66824574 66824575 - T CCDC79 Frame_Shift_Ins p.N65Kfs*7 0.28 TCGA-AZ-6598-01 16 67201782 67201782 C A HSF4 Missense_Mutation p.S338R 0.33 tolerated(0.05) benign(0.008) TCGA-AZ-6598-01 16 67222639 67222639 G T EXOC3L1 Missense_Mutation p.P138T 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 16 67227029 67227029 G A E2F4 Silent p.V121V 0.41 TCGA-AZ-6598-01 16 67682104 67682105 - C RLTPR Frame_Shift_Ins p.A410Rfs*121 0.44 TCGA-AZ-6598-01 16 67692092 67692092 G A ACD Missense_Mutation p.R421C 0.38 tolerated(0.19) benign(0.001) TCGA-AZ-6598-01 16 67978821 67978821 G A SLC12A4 Silent p.L1062L 0.35 TCGA-AZ-6598-01 16 68325154 68325154 G A SLC7A6 Silent p.T279T 0.39 TCGA-AZ-6598-01 16 68405726 68405726 G A SMPD3 Missense_Mutation p.P120L 0.50 tolerated(0.17) benign(0.01) TCGA-AZ-6598-01 16 685667 685667 A G C16orf13 Missense_Mutation p.L102P 0.37 deleterious(0.03) probably_damaging(0.983) TCGA-AZ-6598-01 16 69143446 69143446 G A HAS3 Missense_Mutation p.A50T 0.48 tolerated(0.08) benign(0.102) TCGA-AZ-6598-01 16 69368792 69368792 A G COG8 Missense_Mutation p.C349R 0.38 deleterious(0) probably_damaging(0.991) TCGA-AZ-6598-01 16 697880 697880 G A FAM195A Silent p.L136L 0.35 TCGA-AZ-6598-01 16 703426 703426 G A WDR90 Missense_Mutation p.R403H 0.42 tolerated(0.13) probably_damaging(0.993) TCGA-AZ-6598-01 16 70404228 70404228 A C DDX19A Missense_Mutation p.I375L 0.34 tolerated(0.32) possibly_damaging(0.841) TCGA-AZ-6598-01 16 70531202 70531202 C T COG4 Missense_Mutation p.R468Q 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 16 706404 706404 G A WDR90 Missense_Mutation p.R690Q 0.44 tolerated(0.16) benign(0.027) TCGA-AZ-6598-01 16 70989341 70989341 G A HYDIN Missense_Mutation p.R2085W 0.30 probably_damaging(0.953) TCGA-AZ-6598-01 16 71570592 71570593 - A CHST4 Frame_Shift_Ins p.M7Nfs*104 0.23 TCGA-AZ-6598-01 16 71570611 71570611 C T CHST4 Silent p.L11L 0.11 TCGA-AZ-6598-01 16 71602123 71602123 G A TAT Missense_Mutation p.A430V 0.33 deleterious(0.02) probably_damaging(0.98) TCGA-AZ-6598-01 16 71682669 71682669 G A PHLPP2 3'UTR 0.59 TCGA-AZ-6598-01 16 71782162 71782162 A G AP1G1 Silent p.C542C 0.21 TCGA-AZ-6598-01 16 71887153 71887153 C - ATXN1L 3'UTR 0.30 TCGA-AZ-6598-01 16 72108270 72108270 G A HPR Missense_Mutation p.R60H 0.42 tolerated(0.15) benign(0.028) TCGA-AZ-6598-01 16 731087 731087 C T STUB1 Intron 0.56 TCGA-AZ-6598-01 16 74708895 74708895 G A MLKL Silent p.C448C 0.36 TCGA-AZ-6598-01 16 77465253 77465253 T A ADAMTS18 Missense_Mutation p.Y145F 0.43 tolerated(0.08) possibly_damaging(0.866) TCGA-AZ-6598-01 16 77850851 77850851 A C VAT1L Missense_Mutation p.Q89H 0.45 deleterious(0) probably_damaging(0.99) TCGA-AZ-6598-01 16 778927 778928 - G HAGHL Intron 0.24 TCGA-AZ-6598-01 16 79633742 79633742 C T MAF Missense_Mutation p.E20K 0.27 deleterious(0) unknown(0) TCGA-AZ-6598-01 16 81219191 81219191 G T PKD1L2 5'Flank 0.57 TCGA-AZ-6598-01 16 81295947 81295947 C T BCMO1 Intron 0.38 TCGA-AZ-6598-01 16 81914521 81914521 G A PLCG2 Missense_Mutation p.D219N 0.42 tolerated(0.11) benign(0.014) TCGA-AZ-6598-01 16 830332 830332 G A MSLNL Silent p.C223C 0.38 TCGA-AZ-6598-01 16 83994221 83994221 C T OSGIN1 Silent p.P84P 0.09 TCGA-AZ-6598-01 16 84218546 84218546 G - TAF1C Frame_Shift_Del p.G18Vfs*2 0.35 TCGA-AZ-6598-01 16 84492752 84492752 T - ATP2C2 Frame_Shift_Del p.Y727Tfs*11 0.16 TCGA-AZ-6598-01 16 847946 847946 C T CHTF18 Missense_Mutation p.R967C 0.42 deleterious(0.04) probably_damaging(1) TCGA-AZ-6598-01 16 86546556 86546556 G T FOXF1 Silent p.S335S 0.44 TCGA-AZ-6598-01 16 87435800 87435800 A G MAP1LC3B Missense_Mutation p.K39R 0.40 tolerated(0.24) benign(0.012) TCGA-AZ-6598-01 16 87743031 87743031 C T KLHDC4 Silent p.P429P 0.46 TCGA-AZ-6598-01 16 87874687 87874687 A G SLC7A5 Silent p.L247L 0.43 TCGA-AZ-6598-01 16 88066789 88066789 G A BANP Missense_Mutation p.A372T 0.42 tolerated_low_confidence(0.62) benign(0.002) TCGA-AZ-6598-01 16 88599614 88599614 G A ZFPM1 Silent p.A416A 0.58 TCGA-AZ-6598-01 16 88644084 88644084 G C ZC3H18 Missense_Mutation p.E185Q 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6598-01 16 88690460 88690460 G A ZC3H18 Missense_Mutation p.G630R 0.33 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6598-01 16 88928146 88928146 C - TRAPPC2L 3'UTR 0.46 TCGA-AZ-6598-01 16 89167260 89167260 C T ACSF3 Silent p.I57I 0.31 TCGA-AZ-6598-01 16 90095344 90095344 G A C16orf3 3'UTR 0.36 TCGA-AZ-6598-01 16 9010901 9010901 T - USP7 Frame_Shift_Del p.K278Sfs*2 0.33 TCGA-AZ-6598-01 16 90124446 90124447 TG - PRDM7 3'UTR 0.33 TCGA-AZ-6598-01 16 9210553 9210553 C T C16orf72 Silent p.S204S 0.53 TCGA-AZ-6598-01 17 10303730 10303730 C T MYH8 Missense_Mutation p.A1238T 0.51 tolerated(0.09) benign(0.003) TCGA-AZ-6598-01 17 10303844 10303844 C T MYH8 Missense_Mutation p.A1200T 0.54 deleterious(0.03) benign(0.114) TCGA-AZ-6598-01 17 10353804 10353804 C T MYH4 Missense_Mutation p.A1383T 0.40 deleterious(0.04) benign(0.133) TCGA-AZ-6598-01 17 11774927 11774927 G A DNAH9 Missense_Mutation p.A3356T 0.36 benign(0.323) TCGA-AZ-6598-01 17 11795175 11795175 G C DNAH9 Missense_Mutation p.D3732H 0.10 possibly_damaging(0.873) TCGA-AZ-6598-01 17 12656041 12656041 C - MYOCD Frame_Shift_Del p.S481Pfs*18 0.34 TCGA-AZ-6598-01 17 1373564 1373564 G T MYO1C Missense_Mutation p.H811N 0.30 tolerated(0.3) benign(0.232) TCGA-AZ-6598-01 17 1377974 1377974 C T MYO1C Missense_Mutation p.S576N 0.22 tolerated(0.34) benign(0.006) TCGA-AZ-6598-01 17 15162446 15162446 C T PMP22 Missense_Mutation p.G48E 0.36 tolerated(0.57) possibly_damaging(0.876) TCGA-AZ-6598-01 17 1538676 1538676 C T SCARF1 Silent p.A623A 0.40 TCGA-AZ-6598-01 17 16012203 16012203 C T NCOR1 Silent p.E693E 0.31 TCGA-AZ-6598-01 17 16330835 16330835 G - TRPV2 Frame_Shift_Del p.I444Sfs*23 0.33 TCGA-AZ-6598-01 17 1639351 1639351 G A WDR81 Missense_Mutation p.G1782S 0.27 tolerated(0.92) benign(0.016) TCGA-AZ-6598-01 17 16527227 16527227 T - ZNF624 Frame_Shift_Del p.I325Sfs*167 0.32 TCGA-AZ-6598-01 17 16703375 16703375 C T CCDC144A 3'UTR 0.32 TCGA-AZ-6598-01 17 16703480 16703480 C T CCDC144A 3'UTR 0.31 TCGA-AZ-6598-01 17 1673323 1673323 G A SERPINF1 Missense_Mutation p.A88T 0.22 deleterious(0.01) probably_damaging(0.934) TCGA-AZ-6598-01 17 17117087 17117087 G A FLCN Missense_Mutation p.A541V 0.29 deleterious(0.01) possibly_damaging(0.565) TCGA-AZ-6598-01 17 17698237 17698237 C - RAI1 Frame_Shift_Del p.R660Gfs*159 0.40 TCGA-AZ-6598-01 17 1783979 1783979 G A RPA1 Missense_Mutation p.R412H 0.38 tolerated(0.06) possibly_damaging(0.532) TCGA-AZ-6598-01 17 18010575 18010575 G A DRG2 3'UTR 0.33 TCGA-AZ-6598-01 17 18052641 18052641 C T MYO15A Silent p.D2356D 0.52 TCGA-AZ-6598-01 17 18166139 18166139 C T MIEF2 Silent p.G46G 0.44 TCGA-AZ-6598-01 17 18178094 18178094 C T TOP3A 3'UTR 0.36 TCGA-AZ-6598-01 17 18226392 18226392 C T SMCR8 3'UTR 0.23 TCGA-AZ-6598-01 17 18257091 18257091 A G SHMT1 Missense_Mutation p.V46A 0.17 tolerated(0.29) benign(0.005) TCGA-AZ-6598-01 17 18654331 18654331 C T FBXW10 Missense_Mutation p.R363C 0.09 tolerated(0.05) benign(0.021) TCGA-AZ-6598-01 17 18881661 18881661 G - FAM83G Frame_Shift_Del p.Q440Sfs*5 0.34 TCGA-AZ-6598-01 17 19283245 19283245 G A MAPK7 Missense_Mutation p.G128D 0.36 tolerated(0.47) benign(0.003) TCGA-AZ-6598-01 17 19566771 19566772 - A ALDH3A2 Frame_Shift_Ins p.P358Afs*10 0.20 TCGA-AZ-6598-01 17 19582204 19582204 G A SLC47A2 Missense_Mutation p.S535F 0.44 tolerated(0.16) benign(0.097) TCGA-AZ-6598-01 17 19584902 19584902 C T SLC47A2 Missense_Mutation p.G452S 0.40 deleterious(0) probably_damaging(0.966) TCGA-AZ-6598-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.34 TCGA-AZ-6598-01 17 19687171 19687171 C T ULK2 Missense_Mutation p.V767M 0.41 tolerated(0.26) possibly_damaging(0.46) TCGA-AZ-6598-01 17 19843061 19843061 C A AKAP10 Missense_Mutation p.Q429H 0.22 deleterious(0.03) probably_damaging(0.958) TCGA-AZ-6598-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.33 TCGA-AZ-6598-01 17 20200358 20200358 A G SPECC1 Missense_Mutation p.I1009V 0.36 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 17 20224506 20224506 C T AC004702.2 Intron 0.36 TCGA-AZ-6598-01 17 21320351 21320351 G T KCNJ12 3'UTR 0.13 TCGA-AZ-6598-01 17 2201319 2201319 A G SMG6 Silent p.C626C 0.20 TCGA-AZ-6598-01 17 2297637 2297637 G T MNT Silent p.I219I 0.33 TCGA-AZ-6598-01 17 2297641 2297641 C A MNT Splice_Site p.X218_splice 0.24 TCGA-AZ-6598-01 17 2595110 2595110 C T CLUH Missense_Mutation p.R1206H 0.37 deleterious(0) possibly_damaging(0.902) TCGA-AZ-6598-01 17 2601603 2601603 G A CLUH Silent p.R478R 0.42 TCGA-AZ-6598-01 17 26495677 26495677 T C NLK Silent p.I347I 0.43 TCGA-AZ-6598-01 17 26696769 26696769 G - VTN Frame_Shift_Del p.S97Pfs*2 0.12 TCGA-AZ-6598-01 17 26885568 26885568 T C PIGS Missense_Mutation p.D287G 0.47 deleterious(0.01) benign(0.098) TCGA-AZ-6598-01 17 27033761 27033761 A G PROCA1 Intron 0.26 TCGA-AZ-6598-01 17 27068995 27068996 - C NEK8 Frame_Shift_Ins p.*693Lfs*86 0.34 TCGA-AZ-6598-01 17 27400962 27400962 G A TIAF1 Nonsense_Mutation p.Q86* 0.41 TCGA-AZ-6598-01 17 29196630 29196630 T - ATAD5 Frame_Shift_Del p.F1193Lfs*6 0.23 TCGA-AZ-6598-01 17 2966505 2966505 C T OR1D5 Missense_Mutation p.V133I 0.51 tolerated(0.05) benign(0.013) TCGA-AZ-6598-01 17 30207669 30207669 G T UTP6 Missense_Mutation p.A297D 0.30 tolerated(0.49) benign(0.014) TCGA-AZ-6598-01 17 32614739 32614739 G A CCL11 3'UTR 0.39 TCGA-AZ-6598-01 17 33288746 33288746 C T ZNF830 Missense_Mutation p.A54V 0.30 tolerated(0.54) benign(0.021) TCGA-AZ-6598-01 17 33316560 33316560 C T LIG3 Missense_Mutation p.P256L 0.42 tolerated(0.16) benign(0.003) TCGA-AZ-6598-01 17 33448783 33448783 T C FNDC8 Missense_Mutation p.M24T 0.38 tolerated_low_confidence(0.11) benign(0.006) TCGA-AZ-6598-01 17 33520675 33520676 - G SLC35G3 Frame_Shift_Ins p.C218Lfs*32 0.28 TCGA-AZ-6598-01 17 33592326 33592326 C T SLFN5 Missense_Mutation p.P699S 0.38 deleterious(0.02) benign(0.094) TCGA-AZ-6598-01 17 34079750 34079750 C T GAS2L2 Silent p.E40E 0.42 TCGA-AZ-6598-01 17 34171661 34171661 G A TAF15 Missense_Mutation p.G453D 0.47 deleterious_low_confidence(0.01) unknown(0) TCGA-AZ-6598-01 17 34257748 34257748 C A RDM1 5'UTR 0.31 TCGA-AZ-6598-01 17 34313637 34313637 C T CCL14 Missense_Mutation p.A17T 0.31 tolerated(0.49) benign(0.072) TCGA-AZ-6598-01 17 3431412 3431412 C T TRPV3 Silent p.P470P 0.39 TCGA-AZ-6598-01 17 34340329 34340329 G A CCL23 Nonsense_Mutation p.R108* 0.34 TCGA-AZ-6598-01 17 35736152 35736152 A G C17orf78 Missense_Mutation p.S75G 0.44 tolerated(0.15) benign(0.011) TCGA-AZ-6598-01 17 35913996 35913996 T - SYNRG Frame_Shift_Del p.N610Tfs*3 0.36 TCGA-AZ-6598-01 17 36708254 36708254 G - SRCIN1 Frame_Shift_Del p.S866Afs*4 0.29 TCGA-AZ-6598-01 17 36872901 36872901 G T MLLT6 Missense_Mutation p.G440C 0.08 deleterious(0) unknown(0) TCGA-AZ-6598-01 17 36895085 36895085 C T PCGF2 Missense_Mutation p.E116K 0.38 tolerated(0.05) benign(0.362) TCGA-AZ-6598-01 17 37188601 37188601 G A LRRC37A11P RNA 0.37 TCGA-AZ-6598-01 17 37360385 37360385 C T RPL19 Missense_Mutation p.L138F 0.37 deleterious(0.04) possibly_damaging(0.6) TCGA-AZ-6598-01 17 37821609 37821609 G T TCAP 5'UTR 0.46 TCGA-AZ-6598-01 17 37829317 37829317 C T PGAP3 Missense_Mutation p.V296I 0.18 tolerated(0.41) benign(0.021) TCGA-AZ-6598-01 17 37864636 37864636 G A ERBB2 Silent p.L96L 0.39 TCGA-AZ-6598-01 17 37873849 37873849 A - ERBB2 Intron 0.32 TCGA-AZ-6598-01 17 38318158 38318158 C T CASC3 Silent p.D150D 0.32 TCGA-AZ-6598-01 17 38788560 38788560 G A SMARCE1 Missense_Mutation p.R201C 0.38 deleterious(0.04) possibly_damaging(0.836) TCGA-AZ-6598-01 17 3924509 3924509 G A ZZEF1 Missense_Mutation p.R2440W 0.17 deleterious(0.01) benign(0.339) TCGA-AZ-6598-01 17 39913725 39913725 C T JUP Missense_Mutation p.R663H 0.41 deleterious(0) benign(0.002) TCGA-AZ-6598-01 17 40063712 40063712 G A ACLY Missense_Mutation p.R244W 0.44 deleterious(0.02) probably_damaging(0.969) TCGA-AZ-6598-01 17 40134363 40134363 C T DNAJC7 Missense_Mutation p.D381N 0.37 deleterious(0) probably_damaging(0.979) TCGA-AZ-6598-01 17 40255641 40255641 A G DHX58 Missense_Mutation p.V580A 0.30 deleterious(0.03) probably_damaging(0.993) TCGA-AZ-6598-01 17 40666384 40666386 TTC - ATP6V0A1 In_Frame_Del p.F780del 0.31 TCGA-AZ-6598-01 17 41123646 41123646 G A PTGES3L Missense_Mutation p.A124V 0.43 deleterious(0.02) benign(0.153) TCGA-AZ-6598-01 17 41847041 41847041 C T DUSP3 Missense_Mutation p.G165D 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 17 42030435 42030435 C T PYY Intron 0.37 TCGA-AZ-6598-01 17 42164793 42164793 G T HDAC5 Missense_Mutation p.A625D 0.41 tolerated(0.21) benign(0.146) TCGA-AZ-6598-01 17 42274690 42274691 - G ATXN7L3 Frame_Shift_Ins p.N88Qfs*36 0.32 TCGA-AZ-6598-01 17 42399905 42399905 T C SLC25A39 Missense_Mutation p.Q69R 0.37 tolerated(0.48) benign(0.001) TCGA-AZ-6598-01 17 42460889 42460889 C T ITGA2B Silent p.L394L 0.48 TCGA-AZ-6598-01 17 42475043 42475043 C T GPATCH8 Missense_Mutation p.A1468T 0.39 tolerated(1) unknown(0) TCGA-AZ-6598-01 17 42483347 42483348 - T GPATCH8 Frame_Shift_Ins p.Q189Tfs*10 0.31 TCGA-AZ-6598-01 17 43013662 43013662 G - KIF18B Frame_Shift_Del p.T18Pfs*35 0.49 TCGA-AZ-6598-01 17 43044890 43044890 A - C1QL1 Frame_Shift_Del p.F176Sfs*45 0.32 TCGA-AZ-6598-01 17 43363802 43363802 G A MAP3K14 RNA 0.15 TCGA-AZ-6598-01 17 43893852 43893852 G A CRHR1 Missense_Mutation p.D49N 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 17 44249215 44249215 G A KANSL1 Nonsense_Mutation p.Q99* 0.30 TCGA-AZ-6598-01 17 4442644 4442644 A T MYBBP1A Intron 0.23 TCGA-AZ-6598-01 17 45387560 45387560 G A ITGB3 Missense_Mutation p.R786Q 0.37 deleterious(0.04) benign(0.133) TCGA-AZ-6598-01 17 4539180 4539180 G A ALOX15 Silent p.C345C 0.09 TCGA-AZ-6598-01 17 4540431 4540431 T C ALOX15 Silent p.K310K 0.35 TCGA-AZ-6598-01 17 4575556 4575556 A T PELP1 Missense_Mutation p.F910L 0.38 unknown(0) TCGA-AZ-6598-01 17 45904067 45904067 A G MRPL10 Silent p.S166S 0.42 TCGA-AZ-6598-01 17 46627898 46627898 G - HOXB3 Frame_Shift_Del p.P365Lfs*64 0.43 TCGA-AZ-6598-01 17 46804145 46804145 A C HOXB13 3'UTR 0.09 TCGA-AZ-6598-01 17 4712456 4712456 C T PLD2 Missense_Mutation p.R149W 0.36 deleterious(0) probably_damaging(0.953) TCGA-AZ-6598-01 17 47590338 47590338 G - NGFR Frame_Shift_Del p.C418Afs*48 0.29 TCGA-AZ-6598-01 17 47918915 47918915 T - TAC4 Frame_Shift_Del p.A84Hfs*101 0.37 TCGA-AZ-6598-01 17 48148826 48148826 G A ITGA3 Silent p.S301S 0.17 TCGA-AZ-6598-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.28 TCGA-AZ-6598-01 17 48618846 48618846 C A EPN3 Missense_Mutation p.P459H 0.31 tolerated(0.43) benign(0.005) TCGA-AZ-6598-01 17 48744942 48744942 C T ABCC3 Missense_Mutation p.R487C 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-AZ-6598-01 17 48777241 48777241 A T ANKRD40 Missense_Mutation p.D99E 0.44 tolerated(1) benign(0) TCGA-AZ-6598-01 17 48917576 48917576 G T WFIKKN2 Missense_Mutation p.Q309H 0.45 tolerated(0.16) benign(0) TCGA-AZ-6598-01 17 48940335 48940335 T - TOB1 3'UTR 0.43 TCGA-AZ-6598-01 17 5294909 5294909 T C NUP88 Missense_Mutation p.T486A 0.46 tolerated(0.21) benign(0.005) TCGA-AZ-6598-01 17 53068204 53068204 G T STXBP4 Missense_Mutation p.M22I 0.32 tolerated(0.96) benign(0.001) TCGA-AZ-6598-01 17 56274592 56274592 C T EPX Missense_Mutation p.S365L 0.47 tolerated(0.06) benign(0.005) TCGA-AZ-6598-01 17 56292127 56292127 G T MKS1 Missense_Mutation p.R164S 0.46 deleterious(0.01) possibly_damaging(0.643) TCGA-AZ-6598-01 17 56326949 56326949 G A LPO Missense_Mutation p.A156T 0.54 deleterious(0.02) possibly_damaging(0.642) TCGA-AZ-6598-01 17 58525145 58525145 C A APPBP2 Missense_Mutation p.G519C 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 17 61432639 61432639 A G TANC2 Missense_Mutation p.M750V 0.14 tolerated(0.59) benign(0) TCGA-AZ-6598-01 17 61558935 61558935 C T ACE Silent p.N318N 0.45 TCGA-AZ-6598-01 17 61767026 61767026 C T MAP3K3 Missense_Mutation p.R363C 0.11 deleterious(0.01) possibly_damaging(0.858) TCGA-AZ-6598-01 17 61905487 61905488 TG - PSMC5 Intron 0.29 TCGA-AZ-6598-01 17 62019200 62019200 G T SCN4A Missense_Mutation p.A1481D 0.43 deleterious(0) probably_damaging(0.986) TCGA-AZ-6598-01 17 63696 63696 G A RPH3AL Nonsense_Mutation p.R299* 0.42 TCGA-AZ-6598-01 17 6374618 6374618 G A PITPNM3 Missense_Mutation p.P496L 0.47 tolerated(0.08) benign(0.072) TCGA-AZ-6598-01 17 65020984 65020984 C T CACNG4 Nonsense_Mutation p.R105* 0.46 TCGA-AZ-6598-01 17 650284 650284 G A GEMIN4 Silent p.A333A 0.30 TCGA-AZ-6598-01 17 6526233 6526233 T A KIAA0753 Missense_Mutation p.D358V 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-6598-01 17 67250000 67250000 C T ABCA5 Missense_Mutation p.A1419T 0.41 deleterious(0.03) benign(0.384) TCGA-AZ-6598-01 17 67260957 67260957 A - ABCA5 Frame_Shift_Del p.F1078Lfs*6 0.28 TCGA-AZ-6598-01 17 68174289 68174289 A - KCNJ2 3'UTR 0.08 TCGA-AZ-6598-01 17 6930286 6930286 G A BCL6B Silent p.A401A 0.33 TCGA-AZ-6598-01 17 7095237 7095237 G A DLG4 Missense_Mutation p.R694C 0.18 deleterious(0) possibly_damaging(0.809) TCGA-AZ-6598-01 17 7120492 7120492 G A ACADVL Missense_Mutation p.G10R 0.21 tolerated_low_confidence(0.75) probably_damaging(0.98) TCGA-AZ-6598-01 17 7139431 7139431 A G PHF23 Missense_Mutation p.V272A 0.40 tolerated_low_confidence(0.89) benign(0) TCGA-AZ-6598-01 17 71397252 71397252 C T SDK2 Missense_Mutation p.A960T 0.39 deleterious(0.01) possibly_damaging(0.894) TCGA-AZ-6598-01 17 7139911 7139911 G - PHF23 Frame_Shift_Del p.P112Qfs*20 0.33 TCGA-AZ-6598-01 17 7230150 7230150 G A NEURL4 Silent p.C324C 0.49 TCGA-AZ-6598-01 17 72339181 72339181 C T KIF19 Missense_Mutation p.T113I 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 17 7251702 7251702 G A ACAP1 Missense_Mutation p.R529Q 0.47 tolerated(0.18) benign(0.042) TCGA-AZ-6598-01 17 72590276 72590277 - A C17orf77 3'UTR 0.29 TCGA-AZ-6598-01 17 72610094 72610094 C T CD300E Missense_Mutation p.S156N 0.38 tolerated(0.1) possibly_damaging(0.81) TCGA-AZ-6598-01 17 72781687 72781687 G A TMEM104 Missense_Mutation p.A38T 0.41 deleterious(0.02) possibly_damaging(0.557) TCGA-AZ-6598-01 17 72860308 72860308 G A FDXR Missense_Mutation p.R365W 0.49 deleterious(0) benign(0.113) TCGA-AZ-6598-01 17 73096775 73096775 C T SLC16A5 Silent p.S339S 0.44 TCGA-AZ-6598-01 17 73228994 73228994 G A NUP85 Missense_Mutation p.R482H 0.49 deleterious(0.05) possibly_damaging(0.786) TCGA-AZ-6598-01 17 73497135 73497135 G T CASKIN2 3'UTR 0.39 TCGA-AZ-6598-01 17 73637018 73637018 C T SMIM5 3'UTR 0.58 TCGA-AZ-6598-01 17 73738664 73738664 C T ITGB4 Silent p.D928D 0.41 TCGA-AZ-6598-01 17 74084189 74084189 C T EXOC7 Silent p.K489K 0.35 TCGA-AZ-6598-01 17 74395694 74395694 C T UBE2O Silent p.T488T 0.37 TCGA-AZ-6598-01 17 74524640 74524640 G - CYGB 3'UTR 0.45 TCGA-AZ-6598-01 17 7484102 7484102 G A CD68 Splice_Site p.X254_splice 0.11 TCGA-AZ-6598-01 17 7484875 7484875 G - CD68 3'UTR 0.32 TCGA-AZ-6598-01 17 75208085 75208085 G A SEC14L1 Silent p.V555V 0.42 TCGA-AZ-6598-01 17 75494743 75494743 G A SEPT9 3'UTR 0.33 TCGA-AZ-6598-01 17 7577594 7577595 AC - TP53 Frame_Shift_Del p.C229Yfs*10 0.29 TCGA-AZ-6598-01 17 7612702 7612702 G - EFNB3 Frame_Shift_Del p.G279Vfs*15 0.41 TCGA-AZ-6598-01 17 76424566 76424566 C - DNAH17 Frame_Shift_Del p.E4204Rfs*3 0.12 TCGA-AZ-6598-01 17 76498582 76498582 G A DNAH17-AS1 3'UTR 0.54 TCGA-AZ-6598-01 17 7661944 7661944 C T DNAH2 Missense_Mutation p.T728M 0.43 possibly_damaging(0.513) TCGA-AZ-6598-01 17 7736437 7736437 C T DNAH2 Missense_Mutation p.R4343W 0.57 benign(0.15) TCGA-AZ-6598-01 17 77808751 77808751 G - CBX4 Frame_Shift_Del p.N231Tfs*3 0.36 TCGA-AZ-6598-01 17 78195423 78195423 G A SLC26A11 Missense_Mutation p.A22T 0.09 tolerated_low_confidence(0.65) benign(0.001) TCGA-AZ-6598-01 17 7833935 7833935 G A TRAPPC1 Missense_Mutation p.R143W 0.38 deleterious(0) possibly_damaging(0.75) TCGA-AZ-6598-01 17 78357607 78357607 T C RNF213 Missense_Mutation p.V4734A 0.40 benign(0.01) TCGA-AZ-6598-01 17 78389021 78389021 G A ENDOV Silent p.P9P 0.47 TCGA-AZ-6598-01 17 78968396 78968396 C T CHMP6 Missense_Mutation p.R27W 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 17 79207785 79207785 G A ENTHD2 Missense_Mutation p.A124V 0.46 deleterious(0) benign(0.386) TCGA-AZ-6598-01 17 79514079 79514079 C T C17orf70 Missense_Mutation p.A677T 0.34 deleterious(0.04) benign(0.003) TCGA-AZ-6598-01 17 79639747 79639747 C A CCDC137 3'UTR 0.44 TCGA-AZ-6598-01 17 79639761 79639761 G A CCDC137 3'UTR 0.45 TCGA-AZ-6598-01 17 79661863 79661863 G A HGS Missense_Mutation p.A319T 0.42 tolerated(0.13) benign(0.115) TCGA-AZ-6598-01 17 7979631 7979631 C T ALOX12B Missense_Mutation p.G465E 0.39 tolerated(1) benign(0) TCGA-AZ-6598-01 17 79899172 79899172 G A MYADML2 Missense_Mutation p.T149M 0.26 deleterious(0) probably_damaging(0.927) TCGA-AZ-6598-01 17 7990849 7990849 G A ALOX12B 5'UTR 0.34 TCGA-AZ-6598-01 17 80015035 80015035 C - GPS1 3'UTR 0.35 TCGA-AZ-6598-01 17 80044376 80044376 G A FASN Silent p.P1162P 0.44 TCGA-AZ-6598-01 17 8020193 8020193 T C ALOXE3 Missense_Mutation p.S217G 0.34 deleterious(0.04) possibly_damaging(0.764) TCGA-AZ-6598-01 17 80790312 80790312 G A ZNF750 Missense_Mutation p.R7W 0.47 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 17 8215388 8215388 C - ARHGEF15 Frame_Shift_Del p.T13Rfs*169 0.35 TCGA-AZ-6598-01 17 8219361 8219361 C T ARHGEF15 Silent p.A533A 0.34 TCGA-AZ-6598-01 17 8701309 8701309 A - MFSD6L Frame_Shift_Del p.L377Wfs*2 0.33 TCGA-AZ-6598-01 17 8796941 8796941 C T PIK3R5 Silent p.E148E 0.12 TCGA-AZ-6598-01 18 117242 117242 G A ROCK1P1 RNA 0.39 TCGA-AZ-6598-01 18 12699829 12699829 T - CEP76 Frame_Shift_Del p.T99Lfs*90 0.31 TCGA-AZ-6598-01 18 12830962 12830962 G A PTPN2 Missense_Mutation p.R114C 0.36 deleterious(0) probably_damaging(0.961) TCGA-AZ-6598-01 18 14752924 14752924 G A ANKRD30B Silent p.T141T 0.40 TCGA-AZ-6598-01 18 14851871 14851871 C A ANKRD30B Missense_Mutation p.Q1191K 0.34 deleterious(0.04) possibly_damaging(0.828) TCGA-AZ-6598-01 18 18547714 18547714 G A ROCK1 Missense_Mutation p.A1064V 0.43 deleterious(0.03) possibly_damaging(0.866) TCGA-AZ-6598-01 18 19154011 19154011 G A ESCO1 Missense_Mutation p.S265L 0.46 tolerated(0.22) benign(0.003) TCGA-AZ-6598-01 18 19154750 19154750 T - ESCO1 Frame_Shift_Del p.S19Vfs*17 0.22 TCGA-AZ-6598-01 18 20606188 20606188 G T RBBP8 Missense_Mutation p.K893N 0.20 deleterious(0.01) possibly_damaging(0.807) TCGA-AZ-6598-01 18 21099051 21099051 G - C18orf8 Frame_Shift_Del p.M255Cfs*4 0.28 TCGA-AZ-6598-01 18 21107804 21107804 T - C18orf8 Frame_Shift_Del p.F413Lfs*67 0.35 TCGA-AZ-6598-01 18 21739921 21739921 A - CABYR Frame_Shift_Del p.S345Vfs*20 0.37 TCGA-AZ-6598-01 18 22056854 22056854 A T HRH4 Silent p.G167G 0.10 TCGA-AZ-6598-01 18 2750476 2750476 C T SMCHD1 Missense_Mutation p.A1379V 0.09 tolerated(0.14) benign(0.006) TCGA-AZ-6598-01 18 28669425 28669425 G A DSC2 Missense_Mutation p.R203C 0.49 deleterious(0.01) probably_damaging(0.985) TCGA-AZ-6598-01 18 30260481 30260481 G A KLHL14 Silent p.S440S 0.37 TCGA-AZ-6598-01 18 3277338 3277338 G A MYL12B Missense_Mutation p.G91D 0.45 deleterious(0) probably_damaging(0.994) TCGA-AZ-6598-01 18 32888084 32888090 AAAAAAC - ZNF271 RNA 0.29 TCGA-AZ-6598-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.53 TCGA-AZ-6598-01 18 39550422 39550423 - A PIK3C3 Intron 0.27 TCGA-AZ-6598-01 18 43247806 43247806 C T SLC14A2 Missense_Mutation p.P576S 0.34 tolerated(0.2) possibly_damaging(0.893) TCGA-AZ-6598-01 18 43311081 43311081 C G SLC14A1 Missense_Mutation p.L141V 0.40 deleterious(0.02) probably_damaging(0.911) TCGA-AZ-6598-01 18 44555156 44555156 C A TCEB3C Missense_Mutation p.G353V 0.13 tolerated(0.37) benign(0.19) TCGA-AZ-6598-01 18 44560778 44560778 C - TCEB3B Frame_Shift_Del p.Q287Kfs*34 0.31 TCGA-AZ-6598-01 18 44561056 44561056 C T TCEB3B Missense_Mutation p.G194R 0.53 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-6598-01 18 44656681 44656681 G A HDHD2 Missense_Mutation p.P110L 0.32 deleterious(0.01) benign(0.106) TCGA-AZ-6598-01 18 45423144 45423144 G A SMAD2 5'UTR 0.43 TCGA-AZ-6598-01 18 46783428 46783428 G A DYM Missense_Mutation p.S471L 0.45 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 18 47516892 47516892 T C MYO5B Splice_Site p.X253_splice 0.39 TCGA-AZ-6598-01 18 48575155 48575155 T C SMAD4 Missense_Mutation p.Y117H 0.38 deleterious(0.03) possibly_damaging(0.872) TCGA-AZ-6598-01 18 50741954 50741954 T C DCC Missense_Mutation p.V633A 0.43 tolerated(0.24) benign(0.425) TCGA-AZ-6598-01 18 5394733 5394733 T A EPB41L3 Missense_Mutation p.K1071N 0.46 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 18 55816629 55816629 C T NEDD4L Intron 0.39 TCGA-AZ-6598-01 18 56202354 56202355 TC - ALPK2 Frame_Shift_Del p.K1689Vfs*36 0.19 TCGA-AZ-6598-01 18 56246440 56246440 T - ALPK2 Frame_Shift_Del p.K523Rfs*15 0.31 TCGA-AZ-6598-01 18 580763 580763 G A CETN1 Missense_Mutation p.G119R 0.42 deleterious(0.02) probably_damaging(0.978) TCGA-AZ-6598-01 18 60646437 60646437 G A PHLPP1 Missense_Mutation p.A1643T 0.49 deleterious(0) probably_damaging(0.956) TCGA-AZ-6598-01 18 61232823 61232823 A T SERPINB12 Missense_Mutation p.D264V 0.12 deleterious(0) probably_damaging(0.952) TCGA-AZ-6598-01 18 61468118 61468118 G A SERPINB7 Missense_Mutation p.A206T 0.42 tolerated(0.17) benign(0.019) TCGA-AZ-6598-01 18 64172507 64172507 G A CDH19 Missense_Mutation p.R621W 0.45 deleterious(0) possibly_damaging(0.872) TCGA-AZ-6598-01 18 64172527 64172527 A - CDH19 Frame_Shift_Del p.L614* 0.13 TCGA-AZ-6598-01 18 66504331 66504331 G C CCDC102B Missense_Mutation p.A111P 0.47 deleterious(0) probably_damaging(0.995) TCGA-AZ-6598-01 18 67563042 67563042 C T CD226 Missense_Mutation p.V208I 0.47 tolerated(0.72) benign(0.019) TCGA-AZ-6598-01 18 67993794 67993795 - C SOCS6 3'UTR 0.28 TCGA-AZ-6598-01 18 67997032 67997033 TT - SOCS6 3'UTR 0.15 TCGA-AZ-6598-01 18 7011409 7011409 C G LAMA1 Missense_Mutation p.G1193R 0.47 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 18 7038884 7038885 GT - LAMA1 Frame_Shift_Del p.N496Tfs*14 0.33 TCGA-AZ-6598-01 18 70526116 70526116 A - NETO1 Frame_Shift_Del p.F138Lfs*29 0.28 TCGA-AZ-6598-01 18 706529 706529 G A ENOSF1 Missense_Mutation p.A66V 0.35 tolerated(0.09) benign(0.002) TCGA-AZ-6598-01 18 72109245 72109246 - A FAM69C Frame_Shift_Ins p.S328Ffs*4 0.28 TCGA-AZ-6598-01 18 72167258 72167258 G A CNDP2 Missense_Mutation p.R17H 0.47 tolerated(0.2) benign(0.008) TCGA-AZ-6598-01 18 72998107 72998108 AA - TSHZ1 Frame_Shift_Del p.K204Rfs*24 0.27 TCGA-AZ-6598-01 18 74155026 74155026 G A ZNF516 5'UTR 0.41 TCGA-AZ-6598-01 18 74659517 74659517 C T ZNF236 Missense_Mutation p.S1606L 0.24 deleterious(0.01) benign(0.102) TCGA-AZ-6598-01 18 74778307 74778307 T - MBP Frame_Shift_Del p.K29Rfs*36 0.34 TCGA-AZ-6598-01 18 77464902 77464902 G A CTDP1 Missense_Mutation p.A253T 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 18 77737613 77737613 A G TXNL4A Missense_Mutation p.V81A 0.41 deleterious(0.01) benign(0.063) TCGA-AZ-6598-01 18 8384642 8384642 G T PTPRM Missense_Mutation p.E1334D 0.07 tolerated(0.33) benign(0.17) TCGA-AZ-6598-01 18 8720462 8720462 G A SOGA2 Missense_Mutation p.A109T 0.46 tolerated(0.11) benign(0.106) TCGA-AZ-6598-01 18 9396305 9396305 A T TWSG1 Missense_Mutation p.D84V 0.37 deleterious(0.03) possibly_damaging(0.776) TCGA-AZ-6598-01 18 9593828 9593828 C T PPP4R1 Missense_Mutation p.C78Y 0.44 tolerated(0.15) possibly_damaging(0.498) TCGA-AZ-6598-01 19 1005213 1005213 G A GRIN3B Nonsense_Mutation p.W571* 0.44 TCGA-AZ-6598-01 19 10220503 10220503 G A PPAN Intron 0.46 TCGA-AZ-6598-01 19 10395089 10395089 G A ICAM1 Silent p.A312A 0.26 TCGA-AZ-6598-01 19 10428050 10428050 A - RAVER1 3'UTR 0.44 TCGA-AZ-6598-01 19 10444507 10444507 G C ICAM3 3'UTR 0.34 TCGA-AZ-6598-01 19 10504112 10504112 G A CDC37 Silent p.A244A 0.08 TCGA-AZ-6598-01 19 1062268 1062268 C T ABCA7 Silent p.L1890L 0.43 TCGA-AZ-6598-01 19 10625408 10625408 G T S1PR5 Missense_Mutation p.L94I 0.37 tolerated(0.07) possibly_damaging(0.832) TCGA-AZ-6598-01 19 10625519 10625519 C T S1PR5 Missense_Mutation p.V57M 0.12 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 19 1063625 1063625 G A ABCA7 Missense_Mutation p.R1932H 0.47 deleterious(0) probably_damaging(0.976) TCGA-AZ-6598-01 19 10655787 10655787 G A ATG4D Silent p.L158L 0.45 TCGA-AZ-6598-01 19 1074142 1074142 G A HMHA1 Missense_Mutation p.R293H 0.45 tolerated(0.07) benign(0.263) TCGA-AZ-6598-01 19 10945782 10945782 G A TMED1 Missense_Mutation p.T98M 0.42 deleterious(0.02) possibly_damaging(0.768) TCGA-AZ-6598-01 19 11224235 11224235 C T LDLR Silent p.G461G 0.38 TCGA-AZ-6598-01 19 11417402 11417402 C T TSPAN16 Silent p.R191R 0.07 TCGA-AZ-6598-01 19 11541818 11541818 A - CCDC151 Frame_Shift_Del p.F89Lfs*27 0.30 TCGA-AZ-6598-01 19 12246615 12246615 C T ZNF20 Missense_Mutation p.M36I 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-AZ-6598-01 19 12296968 12296968 A G ZNF136 Missense_Mutation p.K57R 0.08 tolerated(0.14) benign(0.012) TCGA-AZ-6598-01 19 12575622 12575622 C T ZNF709 Missense_Mutation p.A372T 0.37 tolerated(0.08) probably_damaging(0.997) TCGA-AZ-6598-01 19 12904115 12904115 T - JUNB 3'UTR 0.25 TCGA-AZ-6598-01 19 12918306 12918306 G A RNASEH2A Missense_Mutation p.V133M 0.31 deleterious(0) probably_damaging(0.965) TCGA-AZ-6598-01 19 13264925 13264925 C T IER2 3'UTR 0.42 TCGA-AZ-6598-01 19 13397338 13397338 G - CACNA1A Frame_Shift_Del p.L1178Sfs*8 0.12 TCGA-AZ-6598-01 19 14091494 14091494 G A RFX1 Missense_Mutation p.P210L 0.51 tolerated_low_confidence(0.15) benign(0.333) TCGA-AZ-6598-01 19 14261916 14261916 C T LPHN1 Silent p.P1398P 0.46 TCGA-AZ-6598-01 19 14261968 14261968 C T LPHN1 Missense_Mutation p.R1381Q 0.42 deleterious(0) probably_damaging(0.951) TCGA-AZ-6598-01 19 14581661 14581661 A G PKN1 Missense_Mutation p.R881G 0.35 deleterious(0.01) possibly_damaging(0.491) TCGA-AZ-6598-01 19 14593664 14593664 C - GIPC1 Frame_Shift_Del p.G42Afs*56 0.25 TCGA-AZ-6598-01 19 15065049 15065049 G A SLC1A6 Missense_Mutation p.T421M 0.49 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 19 15484808 15484808 C T AKAP8 Missense_Mutation p.G54S 0.53 tolerated(0.11) benign(0.175) TCGA-AZ-6598-01 19 15511828 15511828 G A AKAP8L Silent p.G281G 0.40 TCGA-AZ-6598-01 19 15529740 15529740 C T AKAP8L 5'UTR 0.42 TCGA-AZ-6598-01 19 15839045 15839045 C T OR10H2 Silent p.C64C 0.23 TCGA-AZ-6598-01 19 1592595 1592595 C T MBD3 Silent p.P12P 0.34 TCGA-AZ-6598-01 19 16060636 16060636 C T OR10H4 Silent p.D273D 0.48 TCGA-AZ-6598-01 19 1620979 1620979 G - TCF3 Frame_Shift_Del p.Q361Rfs*33 0.34 TCGA-AZ-6598-01 19 1650215 1650215 G A TCF3 Silent p.G11G 0.45 TCGA-AZ-6598-01 19 16666007 16666007 G A SLC35E1 Silent p.L320L 0.42 TCGA-AZ-6598-01 19 16860328 16860328 C T NWD1 Missense_Mutation p.A292V 0.28 tolerated(0.14) benign(0.008) TCGA-AZ-6598-01 19 17081703 17081703 G - CPAMD8 Frame_Shift_Del p.R785Efs*32 0.37 TCGA-AZ-6598-01 19 17370542 17370542 C A USHBP1 Splice_Site p.X257_splice 0.51 TCGA-AZ-6598-01 19 17389949 17389949 G - BABAM1 3'UTR 0.52 TCGA-AZ-6598-01 19 17393723 17393723 C T ANKLE1 Silent p.C124C 0.11 TCGA-AZ-6598-01 19 17434431 17434431 C T ANO8 Silent p.P1198P 0.18 TCGA-AZ-6598-01 19 17994523 17994523 C T SLC5A5 Missense_Mutation p.P426S 0.35 deleterious(0) possibly_damaging(0.571) TCGA-AZ-6598-01 19 18121109 18121109 C T ARRDC2 Silent p.G318G 0.09 TCGA-AZ-6598-01 19 18245671 18245671 C T MAST3 Silent p.R554R 0.42 TCGA-AZ-6598-01 19 18327598 18327598 G T PDE4C Missense_Mutation p.L480I 0.41 deleterious(0.01) possibly_damaging(0.787) TCGA-AZ-6598-01 19 18679377 18679377 A C KXD1 Missense_Mutation p.Q156P 0.32 tolerated_low_confidence(0.38) benign(0) TCGA-AZ-6598-01 19 19162931 19162931 C T ARMC6 Silent p.G260G 0.44 TCGA-AZ-6598-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.28 TCGA-AZ-6598-01 19 19625572 19625572 C A TSSK6 Missense_Mutation p.R222L 0.17 tolerated(0.24) benign(0.015) TCGA-AZ-6598-01 19 19654128 19654128 G A CILP2 Missense_Mutation p.R350H 0.08 tolerated(0.21) benign(0.004) TCGA-AZ-6598-01 19 19655060 19655060 C T CILP2 Missense_Mutation p.T569M 0.28 tolerated(0.1) benign(0.022) TCGA-AZ-6598-01 19 19738576 19738576 G - LPAR2 5'UTR 0.46 TCGA-AZ-6598-01 19 1979777 1979777 C T CSNK1G2 Silent p.T343T 0.45 TCGA-AZ-6598-01 19 20736534 20736534 G A ZNF737 Silent p.Y37Y 0.43 TCGA-AZ-6598-01 19 2112934 2112934 C T AP3D1 Silent p.P904P 0.44 TCGA-AZ-6598-01 19 21365735 21365735 G A ZNF431 Missense_Mutation p.G210D 0.09 tolerated(0.19) benign(0.001) TCGA-AZ-6598-01 19 21610097 21610097 T - ZNF493 3'UTR 0.19 TCGA-AZ-6598-01 19 2250432 2250432 C A AMH Missense_Mutation p.P170H 0.53 tolerated(0.06) probably_damaging(0.988) TCGA-AZ-6598-01 19 2251743 2251743 C T AMH Silent p.G490G 0.61 TCGA-AZ-6598-01 19 22836793 22836793 C T ZNF492 Missense_Mutation p.H36Y 0.46 deleterious(0.03) benign(0.403) TCGA-AZ-6598-01 19 2399122 2399122 C A TMPRSS9 Silent p.R115R 0.12 TCGA-AZ-6598-01 19 2807711 2807711 C T THOP1 Silent p.G386G 0.43 TCGA-AZ-6598-01 19 2810653 2810653 G A THOP1 Missense_Mutation p.R553H 0.42 deleterious(0.02) possibly_damaging(0.902) TCGA-AZ-6598-01 19 2834600 2834600 G A ZNF554 Missense_Mutation p.R456Q 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6598-01 19 2851545 2851545 A G ZNF555 Silent p.K70K 0.11 TCGA-AZ-6598-01 19 30017572 30017572 G T VSTM2B Missense_Mutation p.A28S 0.50 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 19 30502084 30502084 T C URI1 Silent p.T373T 0.45 TCGA-AZ-6598-01 19 308883 308883 G T MIER2 Missense_Mutation p.L343M 0.32 tolerated(1) benign(0.061) TCGA-AZ-6598-01 19 30935991 30935991 G A ZNF536 Missense_Mutation p.A508T 0.44 deleterious(0.04) probably_damaging(0.995) TCGA-AZ-6598-01 19 30936534 30936534 C T ZNF536 Missense_Mutation p.P689S 0.38 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 19 31770557 31770557 G A TSHZ3 Missense_Mutation p.P48S 0.45 tolerated(0.51) possibly_damaging(0.556) TCGA-AZ-6598-01 19 32845667 32845667 G A ZNF507 Missense_Mutation p.R644H 0.39 deleterious(0) probably_damaging(0.964) TCGA-AZ-6598-01 19 33077011 33077011 C T PDCD5 Intron 0.42 TCGA-AZ-6598-01 19 33353426 33353426 G A SLC7A9 Missense_Mutation p.A182V 0.20 tolerated(0.44) benign(0.082) TCGA-AZ-6598-01 19 33695642 33695642 G A LRP3 Missense_Mutation p.C120Y 0.48 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 19 33697932 33697932 A G LRP3 Silent p.R588R 0.40 TCGA-AZ-6598-01 19 33703794 33703794 G - SLC7A10 Frame_Shift_Del p.T158Pfs*12 0.31 TCGA-AZ-6598-01 19 34303878 34303878 C - KCTD15 3'UTR 0.27 TCGA-AZ-6598-01 19 34818948 34818948 G A KIAA0355 Silent p.P332P 0.44 TCGA-AZ-6598-01 19 34991075 34991075 C T WTIP Silent p.C398C 0.43 TCGA-AZ-6598-01 19 35173691 35173691 A C ZNF302 Missense_Mutation p.S7R 0.34 tolerated(1) possibly_damaging(0.474) TCGA-AZ-6598-01 19 3539208 3539208 C A C19orf71 Silent p.P11P 0.31 TCGA-AZ-6598-01 19 35655011 35655011 G A FXYD5 Intron 0.40 TCGA-AZ-6598-01 19 3612276 3612276 C T CACTIN Missense_Mutation p.R641H 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6598-01 19 36123999 36123999 G T RBM42 Missense_Mutation p.A177S 0.12 tolerated(0.28) possibly_damaging(0.868) TCGA-AZ-6598-01 19 36215577 36215577 G A KMT2B Missense_Mutation p.R1125H 0.46 probably_damaging(0.964) TCGA-AZ-6598-01 19 36394697 36394698 CT - HCST Frame_Shift_Del p.L47Afs*10 0.24 TCGA-AZ-6598-01 19 36884967 36884967 T C ZFP82 Missense_Mutation p.D92G 0.10 tolerated(0.35) benign(0.001) TCGA-AZ-6598-01 19 3730088 3730088 C T TJP3 Missense_Mutation p.A83V 0.47 deleterious(0.01) benign(0.105) TCGA-AZ-6598-01 19 37369600 37369600 T - ZNF345 3'UTR 0.52 TCGA-AZ-6598-01 19 3747946 3747947 - G TJP3 Frame_Shift_Ins p.P838Afs*7 0.24 TCGA-AZ-6598-01 19 3783942 3783942 C A MATK Missense_Mutation p.R152L 0.46 tolerated(0.09) probably_damaging(0.993) TCGA-AZ-6598-01 19 37854754 37854754 C T HKR1 3'UTR 0.40 TCGA-AZ-6598-01 19 38028123 38028123 G A ZNF793 Missense_Mutation p.R188Q 0.54 deleterious(0.01) benign(0.023) TCGA-AZ-6598-01 19 38380367 38380367 A G WDR87 Missense_Mutation p.M1276T 0.41 benign(0.002) TCGA-AZ-6598-01 19 38572143 38572143 G - SIPA1L3 5'UTR 0.26 TCGA-AZ-6598-01 19 38818100 38818100 C T KCNK6 3'UTR 0.24 TCGA-AZ-6598-01 19 39018334 39018334 C T RYR1 Silent p.G3578G 0.47 TCGA-AZ-6598-01 19 39086993 39086993 C T MAP4K1 Missense_Mutation p.R692H 0.37 tolerated(0.06) probably_damaging(0.998) TCGA-AZ-6598-01 19 39088157 39088157 C T MAP4K1 Missense_Mutation p.A583T 0.38 tolerated(0.72) possibly_damaging(0.584) TCGA-AZ-6598-01 19 39360271 39360271 C T RINL Silent p.T472T 0.42 TCGA-AZ-6598-01 19 39912918 39912918 G A PLEKHG2 Missense_Mutation p.R556Q 0.46 tolerated_low_confidence(0.11) benign(0.015) TCGA-AZ-6598-01 19 4047674 4047674 G - ZBTB7A 3'UTR 0.32 TCGA-AZ-6598-01 19 40978534 40978534 G A SPTBN4 Silent p.A2A 0.40 TCGA-AZ-6598-01 19 40978663 40978663 G A SPTBN4 Silent p.S45S 0.33 TCGA-AZ-6598-01 19 4110555 4110555 G A MAP2K2 Silent p.Y134Y 0.46 TCGA-AZ-6598-01 19 41118995 41118995 C - LTBP4 Frame_Shift_Del p.P843Lfs*37 0.19 TCGA-AZ-6598-01 19 41173692 41173692 C T NUMBL Missense_Mutation p.R504Q 0.48 tolerated_low_confidence(0.12) possibly_damaging(0.885) TCGA-AZ-6598-01 19 41916543 41916544 - C BCKDHA Frame_Shift_Ins p.R40Qfs*11 0.32 TCGA-AZ-6598-01 19 42584810 42584810 A G ZNF574 Silent p.A684A 0.39 TCGA-AZ-6598-01 19 42703690 42703690 C T DEDD2 Missense_Mutation p.R294H 0.46 deleterious(0) benign(0.105) TCGA-AZ-6598-01 19 42730452 42730452 G A ZNF526 Missense_Mutation p.A633T 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AZ-6598-01 19 42794635 42794635 G A CIC Missense_Mutation p.R572Q 0.53 possibly_damaging(0.885) TCGA-AZ-6598-01 19 42859967 42859967 C T MEGF8 Missense_Mutation p.S1334L 0.45 deleterious(0) benign(0.249) TCGA-AZ-6598-01 19 42874382 42874382 A G MEGF8 Silent p.S2225S 0.36 TCGA-AZ-6598-01 19 42879864 42879864 C T MEGF8 Missense_Mutation p.T2425M 0.39 tolerated(0.31) benign(0.388) TCGA-AZ-6598-01 19 4290522 4290522 C A SHD Silent p.P305P 0.39 TCGA-AZ-6598-01 19 4311846 4311846 C T FSD1 Silent p.S166S 0.45 TCGA-AZ-6598-01 19 43268106 43268106 T G PSG8 Missense_Mutation p.N131T 0.19 tolerated(1) benign(0.001) TCGA-AZ-6598-01 19 43268109 43268109 T C PSG8 Missense_Mutation p.E130G 0.20 tolerated(0.4) benign(0) TCGA-AZ-6598-01 19 43268115 43268115 C T PSG8 Missense_Mutation p.G128D 0.21 tolerated(0.5) benign(0.007) TCGA-AZ-6598-01 19 4329979 4329979 C T STAP2 Missense_Mutation p.R145H 0.51 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 19 43441229 43441229 G T PSG7 5'UTR 0.42 TCGA-AZ-6598-01 19 4354115 4354115 C T MPND Silent p.R246R 0.12 TCGA-AZ-6598-01 19 44677107 44677108 - A ZNF226 Intron 0.29 TCGA-AZ-6598-01 19 44740986 44740986 A G ZNF227 3'UTR 0.50 TCGA-AZ-6598-01 19 45297471 45297471 C T CBLC Missense_Mutation p.S432L 0.38 deleterious(0.04) benign(0.001) TCGA-AZ-6598-01 19 45316808 45316808 G A BCAM Missense_Mutation p.A239T 0.37 deleterious(0.02) benign(0.403) TCGA-AZ-6598-01 19 45528932 45528932 C T RELB Missense_Mutation p.R275W 0.21 deleterious(0.02) probably_damaging(0.982) TCGA-AZ-6598-01 19 45801166 45801166 C A MARK4 Missense_Mutation p.P611T 0.49 tolerated(0.59) benign(0.007) TCGA-AZ-6598-01 19 45855484 45855484 C T ERCC2 Missense_Mutation p.A725T 0.40 deleterious(0) probably_damaging(0.94) TCGA-AZ-6598-01 19 45976200 45976200 G A FOSB Missense_Mutation p.G316D 0.43 tolerated(0.18) benign(0.063) TCGA-AZ-6598-01 19 46283141 46283141 G - DMPK Frame_Shift_Del p.T60Pfs*10 0.37 TCGA-AZ-6598-01 19 46338420 46338421 - G SYMPK Frame_Shift_Ins p.V437Rfs*137 0.29 TCGA-AZ-6598-01 19 4653089 4653089 G A TNFAIP8L1 3'UTR 0.46 TCGA-AZ-6598-01 19 46997590 46997590 A G PNMAL2 Missense_Mutation p.V378A 0.19 deleterious(0) possibly_damaging(0.607) TCGA-AZ-6598-01 19 47261185 47261185 A G FKRP 3'UTR 0.27 TCGA-AZ-6598-01 19 47878900 47878900 G A DHX34 Missense_Mutation p.G748S 0.33 tolerated(0.57) benign(0.015) TCGA-AZ-6598-01 19 47878930 47878931 - C DHX34 Frame_Shift_Ins p.G761Rfs*4 0.45 TCGA-AZ-6598-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.25 TCGA-AZ-6598-01 19 4816340 4816340 C T TICAM1 Missense_Mutation p.A684T 0.44 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 19 4839265 4839265 G A PLIN3 Missense_Mutation p.T415M 0.41 tolerated(0.21) benign(0.029) TCGA-AZ-6598-01 19 49102616 49102616 C A SULT2B1 Missense_Mutation p.P351T 0.41 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6598-01 19 49110226 49110226 C A SPACA4 5'UTR 0.34 TCGA-AZ-6598-01 19 49207129 49207129 C T FUT2 Silent p.L306L 0.36 TCGA-AZ-6598-01 19 49218635 49218635 G A MAMSTR Silent p.Y103Y 0.41 TCGA-AZ-6598-01 19 49253770 49253770 C T FUT1 Missense_Mutation p.V257I 0.55 tolerated(0.7) benign(0.02) TCGA-AZ-6598-01 19 49259285 49259285 G A FGF21 5'UTR 0.40 TCGA-AZ-6598-01 19 49314258 49314258 C T BCAT2 Missense_Mutation p.A3T 0.59 tolerated_low_confidence(0.14) benign(0.006) TCGA-AZ-6598-01 19 49519508 49519508 A G LHB Silent p.D81D 0.47 TCGA-AZ-6598-01 19 49850473 49850474 GG - TEAD2 Frame_Shift_Del p.H299Cfs*18 0.36 TCGA-AZ-6598-01 19 49950638 49950638 G A PIH1D1 Silent p.L190L 0.52 TCGA-AZ-6598-01 19 50040361 50040361 C T RCN3 Missense_Mutation p.R173W 0.35 deleterious(0) possibly_damaging(0.591) TCGA-AZ-6598-01 19 50103032 50103032 G A PRR12 Silent p.L1394L 0.50 TCGA-AZ-6598-01 19 50119153 50119153 A C PRR12 Missense_Mutation p.E1725A 0.42 unknown(0) TCGA-AZ-6598-01 19 50157988 50157988 G T SCAF1 Missense_Mutation p.G1160V 0.43 possibly_damaging(0.736) TCGA-AZ-6598-01 19 50195561 50195561 G A CPT1C Missense_Mutation p.G18R 0.41 deleterious(0) benign(0.04) TCGA-AZ-6598-01 19 50905055 50905055 G - POLD1 Frame_Shift_Del p.P116Hfs*53 0.37 TCGA-AZ-6598-01 19 51009281 51009281 G A JOSD2 3'UTR 0.44 TCGA-AZ-6598-01 19 51021281 51021281 G A LRRC4B Silent p.N563N 0.54 TCGA-AZ-6598-01 19 51165435 51165435 G A SHANK1 Silent p.G2091G 0.45 TCGA-AZ-6598-01 19 51171782 51171782 G A SHANK1 Silent p.A1145A 0.25 TCGA-AZ-6598-01 19 51671572 51671572 G A CTD-3187F8.14 Intron 0.38 TCGA-AZ-6598-01 19 51841454 51841454 G - VSIG10L Frame_Shift_Del p.R580Efs*108 0.33 TCGA-AZ-6598-01 19 51870355 51870355 A - CLDND2 3'UTR 0.20 TCGA-AZ-6598-01 19 51871914 51871914 G A CLDND2 5'UTR 0.57 TCGA-AZ-6598-01 19 51918614 51918615 - TG SIGLEC10 Frame_Shift_Ins p.S384Tfs*8 0.32 TCGA-AZ-6598-01 19 52327442 52327442 G A FPR3 Silent p.T147T 0.32 TCGA-AZ-6598-01 19 52447580 52447580 G A ZNF613 Silent p.R148R 0.39 TCGA-AZ-6598-01 19 52497406 52497406 C T ZNF615 Missense_Mutation p.R319Q 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-AZ-6598-01 19 53086002 53086002 A - ZNF701 Frame_Shift_Del p.K298Nfs*4 0.25 TCGA-AZ-6598-01 19 53612265 53612265 T G ZNF415 Missense_Mutation p.N345H 0.42 tolerated(0.21) benign(0.002) TCGA-AZ-6598-01 19 53794448 53794448 C T BIRC8 5'UTR 0.45 TCGA-AZ-6598-01 19 53994601 53994601 G A ZNF813 Missense_Mutation p.C372Y 0.29 tolerated(0.07) benign(0.02) TCGA-AZ-6598-01 19 54299164 54299164 C T NLRP12 Missense_Mutation p.R1016Q 0.46 tolerated(0.43) unknown(0) TCGA-AZ-6598-01 19 54496345 54496345 G A CACNG6 Missense_Mutation p.G72S 0.55 tolerated(0.4) benign(0.236) TCGA-AZ-6598-01 19 54627239 54627239 C A PRPF31 Silent p.S213S 0.41 TCGA-AZ-6598-01 19 54627924 54627926 CAT - PRPF31 In_Frame_Del p.I249del 0.42 TCGA-AZ-6598-01 19 54802086 54802086 G A LILRA3 Missense_Mutation p.R368C 0.47 tolerated(0.12) benign(0.077) TCGA-AZ-6598-01 19 54804212 54804212 G A LILRA3 5'UTR 0.43 TCGA-AZ-6598-01 19 54967331 54967331 G A LENG8 Missense_Mutation p.R404H 0.40 tolerated(0.12) probably_damaging(0.999) TCGA-AZ-6598-01 19 55148385 55148385 C - LILRB1 3'UTR 0.41 TCGA-AZ-6598-01 19 55870781 55870781 C T FAM71E2 Silent p.A485A 0.48 TCGA-AZ-6598-01 19 55873660 55873660 G - FAM71E2 Frame_Shift_Del p.L173Wfs*379 0.33 TCGA-AZ-6598-01 19 56104954 56104956 GAG - FIZ1 In_Frame_Del p.S118del 0.48 TCGA-AZ-6598-01 19 56113465 56113465 C - ZNF524 5'UTR 0.31 TCGA-AZ-6598-01 19 56154007 56154007 C - ZNF580 Frame_Shift_Del p.R46Dfs*145 0.46 TCGA-AZ-6598-01 19 56156937 56156937 C - ZNF581 3'UTR 0.30 TCGA-AZ-6598-01 19 56973747 56973748 - C ZNF667 5'UTR 0.26 TCGA-AZ-6598-01 19 57060489 57060489 C T ZFP28 Missense_Mutation p.P229L 0.45 tolerated(0.25) benign(0.002) TCGA-AZ-6598-01 19 57066682 57066682 C A ZFP28 Missense_Mutation p.P843H 0.12 tolerated(0.08) benign(0.016) TCGA-AZ-6598-01 19 57328255 57328255 C T PEG3 Missense_Mutation p.A519T 0.38 tolerated(0.13) possibly_damaging(0.746) TCGA-AZ-6598-01 19 5757908 5757908 G A CATSPERD Missense_Mutation p.G445S 0.10 tolerated(0.07) possibly_damaging(0.779) TCGA-AZ-6598-01 19 58058212 58058212 A - ZNF550 3'UTR 0.76 TCGA-AZ-6598-01 19 58101952 58101953 AG - ZIK1 Frame_Shift_Del p.R259Sfs*12 0.32 TCGA-AZ-6598-01 19 58320004 58320004 T - ZNF552 Frame_Shift_Del p.S210Afs*9 0.26 TCGA-AZ-6598-01 19 58400272 58400272 C T ZNF814 5'UTR 0.38 TCGA-AZ-6598-01 19 58438783 58438783 T - ZNF418 Frame_Shift_Del p.R256Dfs*130 0.29 TCGA-AZ-6598-01 19 58846400 58846400 C T ZSCAN22 Silent p.L78L 0.37 TCGA-AZ-6598-01 19 59027797 59027797 C T ZBTB45 Missense_Mutation p.R415Q 0.39 deleterious(0.01) possibly_damaging(0.858) TCGA-AZ-6598-01 19 59074609 59074609 G A MZF1 Silent p.R345R 0.57 TCGA-AZ-6598-01 19 5917568 5917568 G A RANBP3 3'UTR 0.55 TCGA-AZ-6598-01 19 5978111 5978111 T C RANBP3 5'UTR 0.23 TCGA-AZ-6598-01 19 6213976 6213976 G - MLLT1 Frame_Shift_Del p.Q461Rfs*46 0.30 TCGA-AZ-6598-01 19 6364594 6364594 C T CLPP Missense_Mutation p.R167C 0.11 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 19 6415888 6415890 GAG - KHSRP In_Frame_Del p.P539del 0.14 TCGA-AZ-6598-01 19 6430130 6430131 - C SLC25A41 Frame_Shift_Ins p.L136Afs*27 0.26 TCGA-AZ-6598-01 19 6458220 6458220 C T SLC25A23 Missense_Mutation p.R91Q 0.42 deleterious(0.03) possibly_damaging(0.649) TCGA-AZ-6598-01 19 7032402 7032402 C T MBD3L5 Nonsense_Mutation p.R42* 0.42 TCGA-AZ-6598-01 19 7117045 7117045 G A INSR 3'UTR 0.18 TCGA-AZ-6598-01 19 7607491 7607491 C T PNPLA6 Missense_Mutation p.R442C 0.36 deleterious(0) benign(0.351) TCGA-AZ-6598-01 19 7675417 7675417 C T CAMSAP3 Silent p.L299L 0.37 TCGA-AZ-6598-01 19 7675769 7675769 C - CAMSAP3 Frame_Shift_Del p.R363Gfs*42 0.15 TCGA-AZ-6598-01 19 7688121 7688121 C A XAB2 Missense_Mutation p.G392C 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 19 7809010 7809010 G A CD209 Silent p.G332G 0.40 TCGA-AZ-6598-01 19 7809881 7809881 G A CD209 Silent p.T282T 0.39 TCGA-AZ-6598-01 19 7927382 7927382 A C EVI5L Missense_Mutation p.S637R 0.40 tolerated(0.58) benign(0.357) TCGA-AZ-6598-01 19 7928377 7928377 G T EVI5L Missense_Mutation p.R736L 0.22 tolerated_low_confidence(0.16) benign(0.066) TCGA-AZ-6598-01 19 828253 828253 G A AZU1 Missense_Mutation p.V28I 0.49 tolerated(0.06) probably_damaging(0.983) TCGA-AZ-6598-01 19 8387216 8387216 T - RPS28 3'UTR 0.43 TCGA-AZ-6598-01 19 8576392 8576392 C A ZNF414 Missense_Mutation p.Q301H 0.45 tolerated(0.08) probably_damaging(0.998) TCGA-AZ-6598-01 19 8587669 8587669 G - MYO1F Frame_Shift_Del p.L967Cfs*94 0.21 TCGA-AZ-6598-01 19 877125 877125 G A MED16 Missense_Mutation p.A470V 0.12 deleterious(0.03) benign(0.306) TCGA-AZ-6598-01 19 9064310 9064310 G - MUC16 Frame_Shift_Del p.S7713Lfs*5 0.35 TCGA-AZ-6598-01 19 9068115 9068115 G T MUC16 Missense_Mutation p.T6444N 0.39 unknown(0) TCGA-AZ-6598-01 19 9080490 9080490 A G MUC16 Missense_Mutation p.W3181R 0.42 unknown(0) TCGA-AZ-6598-01 19 9086907 9086909 TGT - MUC16 In_Frame_Del p.T1636del 0.55 TCGA-AZ-6598-01 19 9091061 9091061 T G MUC16 Missense_Mutation p.T252P 0.09 unknown(0) TCGA-AZ-6598-01 19 9237397 9237397 G A OR7G3 Missense_Mutation p.T77M 0.43 deleterious(0.03) benign(0.027) TCGA-AZ-6598-01 19 9297922 9297922 T C OR7D2 3'UTR 0.28 TCGA-AZ-6598-01 19 9578738 9578738 A G ZNF560 Silent p.T295T 0.43 TCGA-AZ-6598-01 19 9676721 9676721 C T ZNF121 Silent p.Q356Q 0.41 TCGA-AZ-6598-01 19 9677249 9677249 G A ZNF121 Silent p.C180C 0.33 TCGA-AZ-6598-01 19 9764196 9764196 C T ZNF562 Missense_Mutation p.C237Y 0.13 deleterious(0.02) benign(0.02) TCGA-AZ-6598-01 1 100340251 100340251 C T AGL Nonsense_Mutation p.R323* 0.28 TCGA-AZ-6598-01 1 100477076 100477076 A C SLC35A3 Missense_Mutation p.R207S 0.36 deleterious(0) possibly_damaging(0.834) TCGA-AZ-6598-01 1 10197263 10197263 G T UBE4B Missense_Mutation p.R788I 0.45 deleterious(0) probably_damaging(0.979) TCGA-AZ-6598-01 1 104120335 104166711 1:104120335-104166711 - AMY2B large deletion 0.16 TCGA-AZ-6598-01 1 10459319 10459319 G C PGD Intron 0.32 TCGA-AZ-6598-01 1 10715824 10715824 T C CASZ1 Missense_Mutation p.K516R 0.22 tolerated(0.08) probably_damaging(0.999) TCGA-AZ-6598-01 1 10725190 10725190 T A CASZ1 Missense_Mutation p.D152V 0.37 deleterious_low_confidence(0) benign(0.211) TCGA-AZ-6598-01 1 109756720 109756720 C T SARS Silent p.L36L 0.20 TCGA-AZ-6598-01 1 109815852 109815852 T C CELSR2 Silent p.S2801S 0.07 TCGA-AZ-6598-01 1 110169810 110169810 C - AMPD2 Frame_Shift_Del p.P300Lfs*63 0.33 TCGA-AZ-6598-01 1 110258655 110258655 A G GSTM5 Intron 0.26 TCGA-AZ-6598-01 1 110564401 110564401 T - AHCYL1 3'UTR 0.33 TCGA-AZ-6598-01 1 111493964 111493964 A G LRIF1 Silent p.V514V 0.11 TCGA-AZ-6598-01 1 1116223 1116224 GG - TTLL10 Frame_Shift_Del p.V249Pfs*56 0.43 TCGA-AZ-6598-01 1 11187710 11187710 G - MTOR Frame_Shift_Del p.Q2063Rfs*3 0.35 TCGA-AZ-6598-01 1 112525149 112525149 C T KCND3 Missense_Mutation p.G67D 0.49 deleterious(0) probably_damaging(0.988) TCGA-AZ-6598-01 1 11346050 11346050 C A UBIAD1 Silent p.A293A 0.13 TCGA-AZ-6598-01 1 114976244 114976244 C T TRIM33 Silent p.Q345Q 0.40 TCGA-AZ-6598-01 1 115168200 115168200 T C DENND2C Missense_Mutation p.T136A 0.43 tolerated(0.77) benign(0.001) TCGA-AZ-6598-01 1 115217455 115217455 C T AMPD1 Missense_Mutation p.C606Y 0.43 deleterious(0.02) possibly_damaging(0.892) TCGA-AZ-6598-01 1 11596570 11596570 G A PTCHD2 Missense_Mutation p.V1336I 0.38 tolerated(0.15) possibly_damaging(0.712) TCGA-AZ-6598-01 1 11596833 11596833 C T PTCHD2 3'UTR 0.43 TCGA-AZ-6598-01 1 116310958 116310959 - T CASQ2 Frame_Shift_Ins p.Q69Tfs*10 0.34 TCGA-AZ-6598-01 1 1164136 1164136 C - SDF4 Frame_Shift_Del p.G13Vfs*19 0.25 TCGA-AZ-6598-01 1 116926693 116926693 A - ATP1A1 Frame_Shift_Del p.K25Rfs*11 0.26 TCGA-AZ-6598-01 1 116943773 116943773 G A ATP1A1 Missense_Mutation p.V914M 0.37 deleterious(0.03) possibly_damaging(0.867) TCGA-AZ-6598-01 1 117078661 117078662 - T CD58 Frame_Shift_Ins p.I185Nfs*6 0.47 TCGA-AZ-6598-01 1 117568318 117568318 G A CD101 Silent p.E872E 0.43 TCGA-AZ-6598-01 1 117948265 117948265 T C MAN1A2 Missense_Mutation p.F218S 0.41 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 1 118537130 118537130 G A SPAG17 Missense_Mutation p.R1693C 0.40 tolerated(0.07) possibly_damaging(0.645) TCGA-AZ-6598-01 1 118567980 118567980 G - SPAG17 Frame_Shift_Del p.Q1264Rfs*3 0.24 TCGA-AZ-6598-01 1 11863596 11863596 C T MTHFR 5'Flank 0.53 TCGA-AZ-6598-01 1 11982924 11982924 C T KIAA2013 Silent p.T552T 0.23 TCGA-AZ-6598-01 1 120512290 120512290 G A NOTCH2 Missense_Mutation p.R318C 0.41 deleterious(0.01) possibly_damaging(0.863) TCGA-AZ-6598-01 1 1221641 1221641 T A SCNN1D Nonsense_Mutation p.C298* 0.47 TCGA-AZ-6598-01 1 12379633 12379633 C A VPS13D Silent p.T2498T 0.39 TCGA-AZ-6598-01 1 12726785 12726785 G A AADACL4 3'UTR 0.18 TCGA-AZ-6598-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.47 TCGA-AZ-6598-01 1 1290293 1290293 G A MXRA8 Missense_Mutation p.R240C 0.54 deleterious(0) probably_damaging(0.916) TCGA-AZ-6598-01 1 142621046 142621046 C G RP11-417J8.6 RNA 0.12 TCGA-AZ-6598-01 1 143912454 143912454 C A FAM72D 5'UTR 0.27 TCGA-AZ-6598-01 1 144994731 144994731 T C PDE4DIP Translation_Start_Site p.M1? 0.10 deleterious(0) benign(0.117) TCGA-AZ-6598-01 1 145440127 145440127 A C TXNIP Missense_Mutation p.K187N 0.28 deleterious(0) probably_damaging(0.919) TCGA-AZ-6598-01 1 145515755 145515755 G A PEX11B 5'Flank 0.41 TCGA-AZ-6598-01 1 145532251 145532251 C T ITGA10 Missense_Mutation p.R299C 0.44 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 1 145537428 145537428 C T ITGA10 Missense_Mutation p.A813V 0.45 tolerated(0.12) benign(0.026) TCGA-AZ-6598-01 1 145537735 145537736 AG - ITGA10 Splice_Site p.X861_splice 0.33 TCGA-AZ-6598-01 1 145560246 145560246 G C ANKRD35 Silent p.R244R 0.40 TCGA-AZ-6598-01 1 1458924 1458924 G A ATAD3A Missense_Mutation p.A362T 0.31 deleterious(0.02) benign(0.356) TCGA-AZ-6598-01 1 146407980 146407980 C G NBPF12 Silent p.A538A 0.88 TCGA-AZ-6598-01 1 147230492 147230492 A G GJA5 Silent p.N285N 0.45 TCGA-AZ-6598-01 1 148017558 148017558 C A NBPF14 Missense_Mutation p.S248I 0.14 tolerated(0.07) probably_damaging(0.947) TCGA-AZ-6598-01 1 149877537 149877537 C T SV2A Missense_Mutation p.S647N 0.35 tolerated(0.07) probably_damaging(0.93) TCGA-AZ-6598-01 1 149901797 149901797 C T MTMR11 Missense_Mutation p.M553I 0.34 tolerated(0.39) benign(0.004) TCGA-AZ-6598-01 1 150315901 150315901 G T PRPF3 Missense_Mutation p.G467C 0.48 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 1 150524739 150524739 C - ADAMTSL4 5'UTR 0.42 TCGA-AZ-6598-01 1 150784509 150784509 G - ARNT Frame_Shift_Del p.S788Qfs*21 0.26 TCGA-AZ-6598-01 1 150936730 150936730 C T SETDB1 Missense_Mutation p.R1256W 0.20 deleterious(0) probably_damaging(0.987) TCGA-AZ-6598-01 1 151006578 151006578 G A PRUNE Silent p.T410T 0.09 TCGA-AZ-6598-01 1 151288763 151288763 G A PI4KB Silent p.G77G 0.46 TCGA-AZ-6598-01 1 151314646 151314647 - C RFX5 3'UTR 0.34 TCGA-AZ-6598-01 1 151774033 151774033 G - LINGO4 Frame_Shift_Del p.P383Lfs*14 0.22 TCGA-AZ-6598-01 1 151991314 151991314 G A NBPF18P Splice_Site 0.48 TCGA-AZ-6598-01 1 152083670 152083670 C T TCHH Missense_Mutation p.E675K 0.07 unknown(0) TCGA-AZ-6598-01 1 152186115 152186115 G A HRNR Missense_Mutation p.H2664Y 0.20 unknown(0) TCGA-AZ-6598-01 1 152325479 152325479 G A FLG2 Nonsense_Mutation p.R1595* 0.44 TCGA-AZ-6598-01 1 153270457 153270457 C T PGLYRP3 Missense_Mutation p.S334N 0.07 deleterious(0.01) benign(0.089) TCGA-AZ-6598-01 1 153362605 153362605 T - S100A8 Frame_Shift_Del p.S86Afs*10 0.29 TCGA-AZ-6598-01 1 153660561 153660561 C - NPR1 Frame_Shift_Del p.F763Sfs*37 0.09 TCGA-AZ-6598-01 1 153906129 153906129 G - DENND4B Frame_Shift_Del p.R1054Dfs*76 0.36 TCGA-AZ-6598-01 1 154112399 154112399 G T NUP210L Missense_Mutation p.A199D 0.36 deleterious(0.03) benign(0.044) TCGA-AZ-6598-01 1 15420752 15420752 G A KAZN Silent p.Q433Q 0.23 TCGA-AZ-6598-01 1 154248164 154248164 T C HAX1 Missense_Mutation p.F276S 0.37 deleterious(0.04) benign(0.182) TCGA-AZ-6598-01 1 154295797 154295797 G A AQP10 Missense_Mutation p.A151T 0.42 deleterious(0.01) benign(0.417) TCGA-AZ-6598-01 1 154321496 154321496 A G ATP8B2 Missense_Mutation p.T1192A 0.42 tolerated(1) unknown(0) TCGA-AZ-6598-01 1 154932028 154932028 G - PYGO2 Frame_Shift_Del p.Q150Rfs*11 0.32 TCGA-AZ-6598-01 1 155033916 155033916 C - ADAM15 Frame_Shift_Del p.P770Lfs*35 0.44 TCGA-AZ-6598-01 1 155209728 155209728 G A GBA Nonsense_Mutation p.R86* 0.40 TCGA-AZ-6598-01 1 155227106 155227106 T C SCAMP3 Missense_Mutation p.Q250R 0.39 deleterious(0) possibly_damaging(0.574) TCGA-AZ-6598-01 1 155491237 155491237 G A ASH1L Missense_Mutation p.A25V 0.41 tolerated_low_confidence(0.41) benign(0.003) TCGA-AZ-6598-01 1 155582339 155582339 G A MSTO1 Missense_Mutation p.S315N 0.32 tolerated(0.34) benign(0) TCGA-AZ-6598-01 1 155584651 155584651 T C MSTO1 3'UTR 0.31 TCGA-AZ-6598-01 1 155707991 155707991 C T DAP3 Silent p.N385N 0.41 TCGA-AZ-6598-01 1 155717448 155717448 G A GON4L 3'Flank 0.29 TCGA-AZ-6598-01 1 155721645 155721646 CA - GON4L Frame_Shift_Del p.V2162Dfs*25 0.20 TCGA-AZ-6598-01 1 156255497 156255498 - CC TMEM79 Frame_Shift_Ins p.R163Pfs*18 0.38 TCGA-AZ-6598-01 1 156354578 156354578 G A RHBG Missense_Mutation p.R440Q 0.35 benign(0) TCGA-AZ-6598-01 1 156508784 156508784 G T IQGAP3 Missense_Mutation p.P1033Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-AZ-6598-01 1 15655660 15655660 A - FHAD1 Intron 0.22 TCGA-AZ-6598-01 1 15656122 15656122 A T FHAD1 3'Flank 0.38 TCGA-AZ-6598-01 1 156779472 156779472 T C SH2D2A Missense_Mutation p.E242G 0.34 deleterious(0) possibly_damaging(0.885) TCGA-AZ-6598-01 1 156882697 156882697 A - PEAR1 Frame_Shift_Del p.G784Afs*136 0.36 TCGA-AZ-6598-01 1 156884482 156884483 - C PEAR1 Frame_Shift_Ins p.G1005Rfs*4 0.35 TCGA-AZ-6598-01 1 156905836 156905836 G - ARHGEF11 Frame_Shift_Del p.L1549Wfs*149 0.33 TCGA-AZ-6598-01 1 157014344 157014344 A - ARHGEF11 5'UTR 0.26 TCGA-AZ-6598-01 1 15736702 15736702 G A EFHD2 Missense_Mutation p.V79I 0.31 tolerated(0.08) benign(0.001) TCGA-AZ-6598-01 1 157490289 157490289 C - FCRL5 Frame_Shift_Del p.G855Afs*5 0.33 TCGA-AZ-6598-01 1 158585118 158585118 C T SPTA1 Missense_Mutation p.A2226T 0.39 tolerated(0.46) probably_damaging(1) TCGA-AZ-6598-01 1 158724933 158724933 C A OR6K6 Missense_Mutation p.L110M 0.44 deleterious(0.01) probably_damaging(0.986) TCGA-AZ-6598-01 1 158725536 158725536 T - OR6K6 Frame_Shift_Del p.F312Sfs*8 0.25 TCGA-AZ-6598-01 1 158746548 158746548 C T OR6N2 Missense_Mutation p.R293H 0.39 deleterious(0.01) benign(0.273) TCGA-AZ-6598-01 1 158909029 158909029 T G PYHIN1 Missense_Mutation p.S191A 0.46 tolerated(0.71) probably_damaging(0.952) TCGA-AZ-6598-01 1 158986451 158986451 G T IFI16 Missense_Mutation p.K170N 0.38 deleterious(0.03) benign(0.03) TCGA-AZ-6598-01 1 15911217 15911217 A G AGMAT Silent p.T82T 0.50 TCGA-AZ-6598-01 1 159273906 159273906 G T FCER1A Nonsense_Mutation p.G89* 0.40 TCGA-AZ-6598-01 1 159785346 159785346 G A FCRL6 Silent p.A400A 0.35 TCGA-AZ-6598-01 1 159854277 159854279 CTC - CCDC19 In_Frame_Del p.E282del 0.39 TCGA-AZ-6598-01 1 16101221 16101221 C T FBLIM1 Missense_Mutation p.R274W 0.47 deleterious(0) possibly_damaging(0.877) TCGA-AZ-6598-01 1 161092223 161092223 C T DEDD Missense_Mutation p.R224H 0.31 deleterious(0) probably_damaging(0.945) TCGA-AZ-6598-01 1 161953848 161953848 C T OLFML2B Missense_Mutation p.V624M 0.46 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 1 162366894 162366894 C T SH2D1B 3'UTR 0.30 TCGA-AZ-6598-01 1 16261624 16261624 C A SPEN Silent p.P2963P 0.45 TCGA-AZ-6598-01 1 163295871 163295871 T C NUF2 Silent p.N10N 0.41 TCGA-AZ-6598-01 1 163306558 163306558 C T NUF2 Missense_Mutation p.R119W 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 1 16355263 16355263 G - CLCNKA Frame_Shift_Del p.V326Cfs*23 0.26 TCGA-AZ-6598-01 1 16372099 16372099 C G CLCNKB Missense_Mutation p.D49E 0.29 tolerated(0.07) possibly_damaging(0.541) TCGA-AZ-6598-01 1 164790823 164790823 G T PBX1 Missense_Mutation p.G387V 0.43 deleterious(0.03) benign(0.003) TCGA-AZ-6598-01 1 167381348 167381348 C - POU2F1 Frame_Shift_Del p.Q570Rfs*16 0.30 TCGA-AZ-6598-01 1 167599631 167599631 C T RCSD1 5'UTR 0.46 TCGA-AZ-6598-01 1 169578825 169578825 G A SELP Missense_Mutation p.A417V 0.26 tolerated(0.15) benign(0.16) TCGA-AZ-6598-01 1 17033795 17033795 C A ESPNP RNA 0.20 TCGA-AZ-6598-01 1 17085014 17085014 G A MST1L RNA 0.13 TCGA-AZ-6598-01 1 170994550 170994550 T A MROH9 Missense_Mutation p.V757D 0.34 deleterious(0) probably_damaging(0.977) TCGA-AZ-6598-01 1 171254893 171254893 C A FMO1 3'UTR 0.40 TCGA-AZ-6598-01 1 171505372 171505374 ATG - PRRC2C In_Frame_Del p.M749del 0.30 TCGA-AZ-6598-01 1 171511293 171511293 C A PRRC2C Missense_Mutation p.P1561H 0.31 unknown(0) TCGA-AZ-6598-01 1 171697659 171697665 CTTACAG ACTTACAGA VAMP4 Splice_Site p.X38_splice 0.19 TCGA-AZ-6598-01 1 172011262 172011262 G A DNM3 Missense_Mutation p.R369H 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-6598-01 1 172411270 172411271 - A PIGC Frame_Shift_Ins p.D165* 0.29 TCGA-AZ-6598-01 1 172437658 172437658 C T C1orf105 Missense_Mutation p.A159V 0.28 tolerated(0.1) benign(0) TCGA-AZ-6598-01 1 173702953 173702953 G A KLHL20 Missense_Mutation p.R42H 0.42 tolerated(0.26) possibly_damaging(0.639) TCGA-AZ-6598-01 1 173910458 173910458 C T RC3H1 Missense_Mutation p.G1066R 0.09 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-AZ-6598-01 1 175299256 175299256 G A TNR Silent p.S1249S 0.29 TCGA-AZ-6598-01 1 175365739 175365739 C T TNR Missense_Mutation p.S394N 0.43 tolerated(0.89) benign(0.196) TCGA-AZ-6598-01 1 175375394 175375394 C A TNR Missense_Mutation p.D153Y 0.36 deleterious(0.01) benign(0.181) TCGA-AZ-6598-01 1 176525981 176525981 G A PAPPA2 Missense_Mutation p.A175T 0.50 tolerated_low_confidence(1) benign(0) TCGA-AZ-6598-01 1 17682535 17682535 G A PADI4 Silent p.V456V 0.40 TCGA-AZ-6598-01 1 177906457 177906457 A - SEC16B Frame_Shift_Del p.Y799Tfs*17 0.33 TCGA-AZ-6598-01 1 179561943 179561943 C T TDRD5 Missense_Mutation p.R65C 0.41 tolerated(0.07) benign(0.002) TCGA-AZ-6598-01 1 180849411 180849411 C T XPR1 Missense_Mutation p.R670C 0.45 deleterious(0) possibly_damaging(0.677) TCGA-AZ-6598-01 1 181701536 181701536 C T CACNA1E Missense_Mutation p.R772W 0.36 deleterious(0) possibly_damaging(0.689) TCGA-AZ-6598-01 1 183602245 183602245 G T ARPC5 Missense_Mutation p.P66H 0.34 deleterious(0) probably_damaging(0.979) TCGA-AZ-6598-01 1 184764468 184764468 G A FAM129A Silent p.P810P 0.41 TCGA-AZ-6598-01 1 1847982 1847982 C A CALML6 Missense_Mutation p.L61I 0.44 tolerated(0.06) possibly_damaging(0.607) TCGA-AZ-6598-01 1 1849569 1849569 G A TMEM52 Missense_Mutation p.R128W 0.39 tolerated(0.05) benign(0.034) TCGA-AZ-6598-01 1 185137524 185137524 T C SWT1 Missense_Mutation p.L73P 0.39 tolerated(0.05) possibly_damaging(0.878) TCGA-AZ-6598-01 1 185171798 185171798 C T SWT1 Silent p.N512N 0.34 TCGA-AZ-6598-01 1 186269343 186269343 C T PRG4 Missense_Mutation p.A66V 0.09 benign(0.052) TCGA-AZ-6598-01 1 186645286 186645286 T C PTGS2 Missense_Mutation p.Y334C 0.19 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 1 18807708 18807708 G - KLHDC7A Frame_Shift_Del p.P80Qfs*123 0.35 TCGA-AZ-6598-01 1 19166997 19166997 G A TAS1R2 Missense_Mutation p.P539L 0.41 deleterious(0.05) benign(0.382) TCGA-AZ-6598-01 1 19203968 19203968 A G ALDH4A1 Missense_Mutation p.L360P 0.27 deleterious(0) probably_damaging(0.953) TCGA-AZ-6598-01 1 19215895 19215895 A G ALDH4A1 Silent p.D70D 0.23 TCGA-AZ-6598-01 1 192545901 192545901 C T RGS1 Intron 0.17 TCGA-AZ-6598-01 1 19488948 19488948 G A UBR4 Missense_Mutation p.A1641V 0.46 benign(0.003) TCGA-AZ-6598-01 1 196759035 196759037 AAG - CFHR3 Intron 0.17 TCGA-AZ-6598-01 1 197055998 197055998 C T ASPM Silent p.K3422K 0.39 TCGA-AZ-6598-01 1 197168890 197168890 T - ZBTB41 Frame_Shift_Del p.K238Nfs*4 0.31 TCGA-AZ-6598-01 1 197446928 197446928 C T CRB1 Silent p.S1380S 0.46 TCGA-AZ-6598-01 1 197875018 197875018 G A C1orf53 Silent p.A119A 0.41 TCGA-AZ-6598-01 1 200017907 200017907 C T NR5A2 Silent p.V357V 0.50 TCGA-AZ-6598-01 1 200378558 200378559 - G ZNF281 Frame_Shift_Ins p.P93Sfs*34 0.33 TCGA-AZ-6598-01 1 201969060 201969060 C T RNPEP Missense_Mutation p.T374M 0.45 tolerated(0.22) probably_damaging(0.93) TCGA-AZ-6598-01 1 202566037 202566037 C A SYT2 Missense_Mutation p.A370S 0.27 tolerated(0.14) probably_damaging(0.994) TCGA-AZ-6598-01 1 203192385 203192385 G T CHIT1 Missense_Mutation p.D161E 0.40 tolerated(1) benign(0.006) TCGA-AZ-6598-01 1 203467831 203467831 C T OPTC Silent p.C131C 0.38 TCGA-AZ-6598-01 1 203821349 203821349 T C ZC3H11A Missense_Mutation p.M752T 0.40 tolerated(1) benign(0) TCGA-AZ-6598-01 1 204125406 204125406 C A REN Missense_Mutation p.C287F 0.38 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 1 204226546 204226546 G A PLEKHA6 Missense_Mutation p.R487C 0.10 deleterious(0) possibly_damaging(0.631) TCGA-AZ-6598-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.38 TCGA-AZ-6598-01 1 204379872 204379872 A G PPP1R15B Missense_Mutation p.L223P 0.39 deleterious(0) probably_damaging(0.995) TCGA-AZ-6598-01 1 204966414 204966414 G A NFASC Missense_Mutation p.A967T 0.38 tolerated(0.63) unknown(0) TCGA-AZ-6598-01 1 205210818 205210818 C T TMCC2 Silent p.R131R 0.51 TCGA-AZ-6598-01 1 205277764 205277764 C T NUAK2 Missense_Mutation p.R150H 0.37 tolerated(0.05) benign(0.01) TCGA-AZ-6598-01 1 205312688 205312688 C T KLHDC8A Silent p.A15A 0.44 TCGA-AZ-6598-01 1 205549894 205549894 A T MFSD4 Missense_Mutation p.T179S 0.39 tolerated(0.58) benign(0.02) TCGA-AZ-6598-01 1 205779392 205779392 C - SLC41A1 Frame_Shift_Del p.V60Ffs*73 0.23 TCGA-AZ-6598-01 1 206652330 206652330 C - IKBKE Frame_Shift_Del p.R348Dfs*32 0.43 TCGA-AZ-6598-01 1 20680309 20680309 G A VWA5B1 Silent p.T1072T 0.37 TCGA-AZ-6598-01 1 206821938 206821938 G - DYRK3 Frame_Shift_Del p.G467Vfs*21 0.36 TCGA-AZ-6598-01 1 207087320 207087320 C T FAIM3 Missense_Mutation p.A53T 0.37 tolerated(0.22) benign(0.018) TCGA-AZ-6598-01 1 207273169 207273169 C A C4BPB Silent p.A218A 0.40 TCGA-AZ-6598-01 1 207867846 207867846 C T CR1L Silent p.S204S 0.41 TCGA-AZ-6598-01 1 210010376 210010376 C - DIEXF Frame_Shift_Del p.P295Rfs*6 0.26 TCGA-AZ-6598-01 1 21049314 21049314 G A SH2D5 Missense_Mutation p.R335C 0.39 deleterious(0) possibly_damaging(0.901) TCGA-AZ-6598-01 1 210637950 210637950 G A HHAT Missense_Mutation p.A321T 0.41 tolerated(0.1) benign(0.043) TCGA-AZ-6598-01 1 210847631 210847631 C T HHAT Silent p.G465G 0.19 TCGA-AZ-6598-01 1 211462545 211462545 C T RCOR3 Missense_Mutation p.T249I 0.43 tolerated(0.23) benign(0.094) TCGA-AZ-6598-01 1 211923141 211923141 T - LPGAT1 3'UTR 0.41 TCGA-AZ-6598-01 1 212550977 212550977 C T TMEM206 Missense_Mutation p.R298H 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 1 214209089 214209089 C T PROX1 Missense_Mutation p.A709V 0.40 deleterious(0.01) possibly_damaging(0.492) TCGA-AZ-6598-01 1 214557484 214557484 G A PTPN14 Missense_Mutation p.R572W 0.13 tolerated(0.17) benign(0.386) TCGA-AZ-6598-01 1 214795420 214795420 A G CENPF Splice_Site p.X289_splice 0.07 TCGA-AZ-6598-01 1 21551913 21551913 C T ECE1 Missense_Mutation p.G624R 0.45 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 1 215844624 215844624 C T USH2A Missense_Mutation p.R4608Q 0.43 benign(0.354) TCGA-AZ-6598-01 1 218478446 218478446 A G RRP15 Missense_Mutation p.N161S 0.09 tolerated(0.17) benign(0.088) TCGA-AZ-6598-01 1 21934814 21934814 C T RAP1GAP Silent p.T460T 0.16 TCGA-AZ-6598-01 1 220101513 220101513 G A SLC30A10 Silent p.T90T 0.28 TCGA-AZ-6598-01 1 220307800 220307800 T - IARS2 Frame_Shift_Del p.Q633Sfs*5 0.32 TCGA-AZ-6598-01 1 220445723 220445723 G T RAB3GAP2 5'UTR 0.50 TCGA-AZ-6598-01 1 220869967 220869967 T C C1orf115 Missense_Mutation p.V108A 0.42 tolerated(0.5) benign(0.294) TCGA-AZ-6598-01 1 222833522 222833522 C A MIA3 Missense_Mutation p.P1660H 0.32 deleterious(0) probably_damaging(0.969) TCGA-AZ-6598-01 1 223177937 223177937 C T DISP1 Silent p.P1066P 0.41 TCGA-AZ-6598-01 1 22332498 22332498 C A CELA3A Intron 0.40 TCGA-AZ-6598-01 1 223980131 223980131 G A TP53BP2 Nonsense_Mutation p.Q986* 0.24 TCGA-AZ-6598-01 1 224001956 224001956 G - TP53BP2 Frame_Shift_Del p.P92Lfs*6 0.46 TCGA-AZ-6598-01 1 226925106 226925106 G A ITPKB Silent p.N18N 0.47 TCGA-AZ-6598-01 1 227618299 227618299 A - CTD-2090I13.1 RNA 0.38 TCGA-AZ-6598-01 1 229568356 229568356 A G ACTA1 Missense_Mutation p.M134T 0.35 tolerated_low_confidence(0.1) benign(0.003) TCGA-AZ-6598-01 1 229677997 229677997 G A ABCB10 Missense_Mutation p.A348V 0.08 deleterious(0) probably_damaging(0.964) TCGA-AZ-6598-01 1 230841866 230841866 G A AGT Missense_Mutation p.L313F 0.52 deleterious(0) benign(0.312) TCGA-AZ-6598-01 1 230904979 230904979 T C CAPN9 Silent p.G253G 0.42 TCGA-AZ-6598-01 1 231488421 231488421 G A SPRTN Missense_Mutation p.E262K 0.42 tolerated(0.17) benign(0.004) TCGA-AZ-6598-01 1 233275548 233275549 - A PCNXL2 Frame_Shift_Ins p.E1191* 0.23 TCGA-AZ-6598-01 1 233394106 233394106 C A PCNXL2 Missense_Mutation p.G501V 0.09 tolerated(0.41) benign(0) TCGA-AZ-6598-01 1 233394715 233394715 C T PCNXL2 Missense_Mutation p.R298Q 0.34 tolerated_low_confidence(1) benign(0) TCGA-AZ-6598-01 1 23376890 23376890 C T KDM1A Silent p.G196G 0.44 TCGA-AZ-6598-01 1 23419319 23419319 G - LUZP1 Frame_Shift_Del p.P479Rfs*22 0.39 TCGA-AZ-6598-01 1 235972459 235972459 A G LYST Silent p.C553C 0.44 TCGA-AZ-6598-01 1 236758856 236758856 G A HEATR1 Silent p.I358I 0.39 TCGA-AZ-6598-01 1 237057764 237057765 - T MTR Frame_Shift_Ins p.G1106Wfs*10 0.33 TCGA-AZ-6598-01 1 237659986 237659987 - G RYR2 Frame_Shift_Ins p.G715Wfs*7 0.29 TCGA-AZ-6598-01 1 238090241 238090241 C - RP11-193H5.1 RNA 0.28 TCGA-AZ-6598-01 1 240072444 240072444 A - CHRM3 Frame_Shift_Del p.K567Rfs*31 0.36 TCGA-AZ-6598-01 1 240371467 240371467 C - FMN2 Frame_Shift_Del p.P1120Lfs*155 0.11 TCGA-AZ-6598-01 1 242159683 242159683 G A MAP1LC3C Missense_Mutation p.R76C 0.52 deleterious(0) benign(0.19) TCGA-AZ-6598-01 1 243327951 243327951 C T CEP170 Missense_Mutation p.R1104H 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 1 24383713 24383713 C A MYOM3 3'UTR 0.41 TCGA-AZ-6598-01 1 244219040 244219040 T G ZBTB18 3'UTR 0.51 TCGA-AZ-6598-01 1 244220227 244220227 C - ZBTB18 3'UTR 0.26 TCGA-AZ-6598-01 1 245025950 245025950 A G HNRNPU Silent p.F258F 0.11 TCGA-AZ-6598-01 1 245133353 245133353 C T RP11-156E8.1 Missense_Mutation p.A342T 0.51 unknown(0) TCGA-AZ-6598-01 1 247048814 247048814 T C AHCTF1 Missense_Mutation p.T890A 0.35 deleterious(0) possibly_damaging(0.476) TCGA-AZ-6598-01 1 248402310 248402310 T - OR2M4 Frame_Shift_Del p.S29Lfs*11 0.35 TCGA-AZ-6598-01 1 248616533 248616533 G A OR2T2 Missense_Mutation p.M145I 0.26 tolerated(0.55) probably_damaging(0.983) TCGA-AZ-6598-01 1 248616626 248616626 T A OR2T2 Missense_Mutation p.N176K 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-6598-01 1 248737617 248737617 G A OR2T34 Missense_Mutation p.L148F 0.38 tolerated(0.17) possibly_damaging(0.549) TCGA-AZ-6598-01 1 248801856 248801856 C T OR2T35 Missense_Mutation p.R235H 0.42 tolerated(0.11) benign(0.004) TCGA-AZ-6598-01 1 249142078 249142078 G A ZNF672 Missense_Mutation p.G202D 0.38 tolerated(0.45) benign(0.002) TCGA-AZ-6598-01 1 25818044 25818044 C T TMEM57 Silent p.G587G 0.08 TCGA-AZ-6598-01 1 26153283 26153283 C T MTFR1L Silent p.R139R 0.43 TCGA-AZ-6598-01 1 26357679 26357679 C - EXTL1 Frame_Shift_Del p.P388Qfs*35 0.36 TCGA-AZ-6598-01 1 26380405 26380405 A G TRIM63 Missense_Mutation p.S344P 0.39 tolerated_low_confidence(0.31) unknown(0) TCGA-AZ-6598-01 1 26509909 26509909 C A CNKSR1 Intron 0.37 TCGA-AZ-6598-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.30 TCGA-AZ-6598-01 1 27269205 27269205 A G NUDC Missense_Mutation p.N162D 0.42 deleterious(0) probably_damaging(0.994) TCGA-AZ-6598-01 1 27278868 27278868 G A C1orf172 Missense_Mutation p.P2S 0.41 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AZ-6598-01 1 27440668 27440668 G - SLC9A1 Frame_Shift_Del p.F155Sfs*36 0.32 TCGA-AZ-6598-01 1 27609862 27609862 G A WDTC1 Silent p.T71T 0.52 TCGA-AZ-6598-01 1 27676997 27676997 C T SYTL1 Intron 0.45 TCGA-AZ-6598-01 1 2938562 2938562 C T ACTRT2 Silent p.D104D 0.27 TCGA-AZ-6598-01 1 32674735 32674735 A G DCDC2B Missense_Mutation p.Y14C 0.08 deleterious(0) probably_damaging(0.959) TCGA-AZ-6598-01 1 32841891 32841891 C T BSDC1 Silent p.K393K 0.40 TCGA-AZ-6598-01 1 33241594 33241594 C - YARS Frame_Shift_Del p.N526Tfs*129 0.28 TCGA-AZ-6598-01 1 3342715 3342715 C T PRDM16 Silent p.D1070D 0.44 TCGA-AZ-6598-01 1 3383842 3383842 G A ARHGEF16 Missense_Mutation p.A249T 0.47 tolerated(0.59) benign(0) TCGA-AZ-6598-01 1 3389759 3389759 C T ARHGEF16 Silent p.N380N 0.40 TCGA-AZ-6598-01 1 34035135 34035135 C A CSMD2 Missense_Mutation p.G2659V 0.20 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 1 3410404 3410404 C - MEGF6 Frame_Shift_Del p.A1440Hfs*78 0.31 TCGA-AZ-6598-01 1 34174971 34174971 G A CSMD2 Intron 0.38 TCGA-AZ-6598-01 1 3427408 3427408 G A MEGF6 Silent p.G391G 0.48 TCGA-AZ-6598-01 1 35365852 35365852 C - DLGAP3 Frame_Shift_Del p.G377Vfs*91 0.57 TCGA-AZ-6598-01 1 35370639 35370639 G - DLGAP3 Frame_Shift_Del p.R116Afs*184 0.40 TCGA-AZ-6598-01 1 35454271 35454271 A - ZMYM6 Frame_Shift_Del p.F804Lfs*6 0.26 TCGA-AZ-6598-01 1 35478094 35478095 - T ZMYM6 Frame_Shift_Ins p.T295Nfs*8 0.32 TCGA-AZ-6598-01 1 35578941 35578941 A - ZMYM1 Frame_Shift_Del p.T506Pfs*15 0.31 TCGA-AZ-6598-01 1 35972480 35972480 T - KIAA0319L Frame_Shift_Del p.K133Nfs*22 0.27 TCGA-AZ-6598-01 1 36558038 36558038 G T ADPRHL2 Missense_Mutation p.E239D 0.45 tolerated(0.53) benign(0.003) TCGA-AZ-6598-01 1 36558053 36558053 C T ADPRHL2 Silent p.S244S 0.46 TCGA-AZ-6598-01 1 36772790 36772790 G A SH3D21 Silent p.R83R 0.43 TCGA-AZ-6598-01 1 36788318 36788318 C T EVA1B Missense_Mutation p.E26K 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-AZ-6598-01 1 3697634 3697634 G A LRRC47 3'UTR 0.48 TCGA-AZ-6598-01 1 3742417 3742417 A - CEP104 Frame_Shift_Del p.C757Vfs*24 0.33 TCGA-AZ-6598-01 1 38052910 38052910 A G GNL2 Splice_Site p.X190_splice 0.44 TCGA-AZ-6598-01 1 38260170 38260170 C T MANEAL Missense_Mutation p.H106Y 0.39 deleterious(0) probably_damaging(0.994) TCGA-AZ-6598-01 1 39333280 39333280 A G MYCBP Silent p.L31L 0.40 TCGA-AZ-6598-01 1 39500278 39500278 C A NDUFS5 3'UTR 0.38 TCGA-AZ-6598-01 1 39776558 39776558 G A MACF1 Silent p.R1057R 0.41 TCGA-AZ-6598-01 1 39785402 39785402 T C MACF1 Missense_Mutation p.Y1343H 0.48 probably_damaging(0.977) TCGA-AZ-6598-01 1 39916756 39916756 C T MACF1 Missense_Mutation p.S4705L 0.41 probably_damaging(0.999) TCGA-AZ-6598-01 1 40219095 40219095 A G PPIE Intron 0.43 TCGA-AZ-6598-01 1 40363061 40363061 A G MYCL Missense_Mutation p.Y390H 0.44 tolerated(0.11) benign(0.03) TCGA-AZ-6598-01 1 40537266 40537266 C T CAP1 3'UTR 0.21 TCGA-AZ-6598-01 1 41012931 41012931 C T ZNF684 Silent p.S312S 0.43 TCGA-AZ-6598-01 1 43212735 43212736 - C LEPRE1 Frame_Shift_Ins p.K755Efs*10 0.25 TCGA-AZ-6598-01 1 43223459 43223459 G - LEPRE1 Frame_Shift_Del p.R359Vfs*40 0.24 TCGA-AZ-6598-01 1 43317083 43317083 C T ZNF691 Missense_Mutation p.R183C 0.44 tolerated(0.19) possibly_damaging(0.771) TCGA-AZ-6598-01 1 43317323 43317323 A T ZNF691 Missense_Mutation p.T263S 0.33 tolerated(0.34) benign(0.383) TCGA-AZ-6598-01 1 43770986 43770986 G A TIE1 Silent p.K152K 0.20 TCGA-AZ-6598-01 1 43895680 43895682 AGG - SZT2 Splice_Site p.X1380_splice 0.39 TCGA-AZ-6598-01 1 43896333 43896333 C T SZT2 Silent p.G1492G 0.34 TCGA-AZ-6598-01 1 43905648 43905648 A G SZT2 Missense_Mutation p.Q2323R 0.39 deleterious(0.02) benign(0.32) TCGA-AZ-6598-01 1 43916979 43916979 T A HYI Missense_Mutation p.D255V 0.38 deleterious(0.04) probably_damaging(0.951) TCGA-AZ-6598-01 1 44402342 44402342 C T ARTN Missense_Mutation p.P198S 0.54 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 1 45288826 45288826 G A PTCH2 Missense_Mutation p.A1091V 0.42 tolerated(1) benign(0.001) TCGA-AZ-6598-01 1 45484596 45484596 C A ZSWIM5 Missense_Mutation p.A1030S 0.49 tolerated(0.43) unknown(0) TCGA-AZ-6598-01 1 46083937 46083937 T - NASP 3'UTR 0.35 TCGA-AZ-6598-01 1 46120890 46120890 A - GPBP1L1 Frame_Shift_Del p.F54Lfs*53 0.36 TCGA-AZ-6598-01 1 46659217 46659217 C - POMGNT1 Intron 0.31 TCGA-AZ-6598-01 1 46669111 46669111 G A LURAP1 Missense_Mutation p.V5M 0.47 deleterious(0.01) benign(0.251) TCGA-AZ-6598-01 1 47746429 47746429 C T STIL Silent p.P567P 0.37 TCGA-AZ-6598-01 1 49052793 49052793 G A AGBL4 Missense_Mutation p.R384C 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 1 52824768 52824768 G A CC2D1B Silent p.R396R 0.33 TCGA-AZ-6598-01 1 53237288 53237288 C T ZYG11B Silent p.L265L 0.40 TCGA-AZ-6598-01 1 53681710 53681710 C A C1orf123 Missense_Mutation p.G120C 0.36 deleterious(0) probably_damaging(0.992) TCGA-AZ-6598-01 1 53930371 53930371 T C DMRTB1 Missense_Mutation p.L271P 0.09 tolerated(0.57) benign(0.001) TCGA-AZ-6598-01 1 53930456 53930456 G A DMRTB1 Silent p.P299P 0.24 TCGA-AZ-6598-01 1 54640346 54640346 T C CYB5RL Missense_Mutation p.I298M 0.40 tolerated(1) benign(0.019) TCGA-AZ-6598-01 1 54694133 54694133 C T SSBP3 Missense_Mutation p.G342R 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-6598-01 1 55074826 55074826 C A ACOT11 Intron 0.37 TCGA-AZ-6598-01 1 55167779 55167779 G A MROH7 Missense_Mutation p.R1101H 0.43 tolerated(0.31) probably_damaging(0.975) TCGA-AZ-6598-01 1 55251700 55251700 G A TTC22 Nonsense_Mutation p.R326* 0.15 TCGA-AZ-6598-01 1 55590240 55590240 G A USP24 Missense_Mutation p.A1341V 0.28 deleterious(0) probably_damaging(0.951) TCGA-AZ-6598-01 1 59043023 59043023 C T TACSTD2 5'UTR 0.29 TCGA-AZ-6598-01 1 5923437 5923437 C T NPHP4 Missense_Mutation p.G1390D 0.39 deleterious(0.03) possibly_damaging(0.798) TCGA-AZ-6598-01 1 5967233 5967233 C T NPHP4 Missense_Mutation p.C518Y 0.23 tolerated(1) benign(0.098) TCGA-AZ-6598-01 1 59812016 59812017 - G FGGY Frame_Shift_Ins p.V140Gfs*25 0.24 TCGA-AZ-6598-01 1 6166758 6166758 G - CHD5 Frame_Shift_Del p.P1887Rfs*14 0.43 TCGA-AZ-6598-01 1 62728928 62728928 G A KANK4 Missense_Mutation p.S792L 0.42 tolerated(0.18) benign(0) TCGA-AZ-6598-01 1 63789392 63789392 C T FOXD3 Silent p.S221S 0.08 TCGA-AZ-6598-01 1 6393614 6393614 T C ACOT7 Missense_Mutation p.T155A 0.30 tolerated(0.1) benign(0.127) TCGA-AZ-6598-01 1 64117397 64117397 G T PGM1 Missense_Mutation p.E464D 0.09 tolerated(0.07) benign(0.366) TCGA-AZ-6598-01 1 6524763 6524763 C T TNFRSF25 Silent p.L104L 0.37 TCGA-AZ-6598-01 1 6536066 6536066 C T PLEKHG5 Missense_Mutation p.R104Q 0.41 deleterious(0) probably_damaging(0.99) TCGA-AZ-6598-01 1 66058438 66058438 T C LEPR Missense_Mutation p.V198A 0.47 deleterious(0) possibly_damaging(0.507) TCGA-AZ-6598-01 1 67412068 67412068 G A MIER1 Intron 0.37 TCGA-AZ-6598-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.34 TCGA-AZ-6598-01 1 68512777 68512777 C T DIRAS3 Silent p.P68P 0.11 TCGA-AZ-6598-01 1 70504692 70504693 - A LRRC7 Frame_Shift_Ins p.V1027Sfs*5 0.38 TCGA-AZ-6598-01 1 70518810 70518810 G A LRRC7 Silent p.P1366P 0.45 TCGA-AZ-6598-01 1 75688074 75688074 C T SLC44A5 Missense_Mutation p.A353T 0.37 deleterious(0.02) possibly_damaging(0.73) TCGA-AZ-6598-01 1 78324723 78324723 T - FAM73A Frame_Shift_Del p.Y367Tfs*5 0.28 TCGA-AZ-6598-01 1 78329638 78329638 A G FAM73A Silent p.E478E 0.26 TCGA-AZ-6598-01 1 8073928 8073928 C T ERRFI1 Missense_Mutation p.R244Q 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-6598-01 1 85559281 85559281 G T WDR63 Missense_Mutation p.S333I 0.40 tolerated(0.15) benign(0.028) TCGA-AZ-6598-01 1 85624341 85624341 A - SYDE2 3'UTR 0.27 TCGA-AZ-6598-01 1 85666019 85666019 C T SYDE2 Missense_Mutation p.A221T 0.40 tolerated_low_confidence(0.06) benign(0.02) TCGA-AZ-6598-01 1 85733523 85733523 C T BCL10 Silent p.T163T 0.11 TCGA-AZ-6598-01 1 86210515 86210515 G A COL24A1 Silent p.S1502S 0.36 TCGA-AZ-6598-01 1 87549881 87549881 G A HS2ST1 Missense_Mutation p.R123H 0.38 deleterious(0.04) benign(0.421) TCGA-AZ-6598-01 1 89573835 89573835 G A GBP2 3'UTR 0.48 TCGA-AZ-6598-01 1 90058417 90058417 C T LRRC8B Missense_Mutation p.H743Y 0.42 deleterious(0.01) benign(0.002) TCGA-AZ-6598-01 1 9101705 9101705 C - SLC2A5 Intron 0.28 TCGA-AZ-6598-01 1 92852579 92852579 G T RPAP2 3'UTR 0.47 TCGA-AZ-6598-01 1 93073164 93073164 G A EVI5 Missense_Mutation p.R634C 0.36 deleterious(0) benign(0.048) TCGA-AZ-6598-01 1 93159417 93159417 G T EVI5 Missense_Mutation p.P391T 0.36 deleterious(0) benign(0.002) TCGA-AZ-6598-01 1 93683393 93683393 A G CCDC18 Silent p.E696E 0.40 TCGA-AZ-6598-01 1 95357932 95357932 T - SLC44A3 Frame_Shift_Del p.F574Lfs*4 0.13 TCGA-AZ-6598-01 1 9642563 9642563 G A SLC25A33 3'UTR 0.32 TCGA-AZ-6598-01 1 97544611 97544611 T C DPYD Missense_Mutation p.D1000G 0.46 tolerated(0.23) benign(0.068) TCGA-AZ-6598-01 1 9775730 9775730 C T PIK3CD Silent p.D91D 0.25 TCGA-AZ-6598-01 1 97771751 97771751 C T DPYD Missense_Mutation p.A721T 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 1 9809826 9809826 C T CLSTN1 Nonsense_Mutation p.W265* 0.36 TCGA-AZ-6598-01 1 98187159 98187159 A G DPYD Silent p.C130C 0.18 TCGA-AZ-6598-01 1 99470033 99470033 G - LPPR5 Frame_Shift_Del p.V66Cfs*14 0.27 TCGA-AZ-6598-01 1 99762351 99762351 G T LPPR4 Nonsense_Mutation p.G156* 0.43 TCGA-AZ-6598-01 20 1187585 1187585 C T C20orf202 Missense_Mutation p.R70C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6598-01 20 11899037 11899037 C T BTBD3 Silent p.S38S 0.32 TCGA-AZ-6598-01 20 11903908 11903908 G T BTBD3 Missense_Mutation p.W388L 0.32 deleterious(0.01) possibly_damaging(0.643) TCGA-AZ-6598-01 20 13370980 13370980 G T TASP1 3'UTR 0.23 TCGA-AZ-6598-01 20 13756641 13756641 C A ESF1 Missense_Mutation p.G305C 0.06 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 20 18365673 18365673 C A DZANK1 Missense_Mutation p.A694S 0.10 tolerated(0.63) benign(0.016) TCGA-AZ-6598-01 20 18424086 18424086 G - DZANK1 Frame_Shift_Del p.R218Gfs*45 0.27 TCGA-AZ-6598-01 20 18790675 18790675 T - C20orf78 Frame_Shift_Del p.D68Tfs*25 0.28 TCGA-AZ-6598-01 20 1902317 1902317 A G SIRPA Missense_Mutation p.D238G 0.05 tolerated(1) benign(0.012) TCGA-AZ-6598-01 20 1961137 1961137 G A PDYN Silent p.G199G 0.26 TCGA-AZ-6598-01 20 1963697 1963697 G T PDYN Missense_Mutation p.L12I 0.61 tolerated(0.06) possibly_damaging(0.586) TCGA-AZ-6598-01 20 21687202 21687202 G A PAX1 Missense_Mutation p.R138Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 20 21687556 21687556 A G PAX1 Missense_Mutation p.Y256C 0.50 deleterious(0.02) probably_damaging(0.96) TCGA-AZ-6598-01 20 2308786 2308786 G A TGM3 Missense_Mutation p.A370T 0.32 tolerated(0.06) benign(0.112) TCGA-AZ-6598-01 20 23347653 23347654 - A GZF1 Frame_Shift_Ins p.P462Tfs*5 0.18 TCGA-AZ-6598-01 20 24940528 24940528 A G CST7 3'UTR 0.47 TCGA-AZ-6598-01 20 2539196 2539196 C T TMC2 Silent p.R59R 0.60 TCGA-AZ-6598-01 20 25477399 25477399 T C NINL Missense_Mutation p.R404G 0.07 deleterious(0) probably_damaging(0.922) TCGA-AZ-6598-01 20 26094523 26094523 G T NCOR1P1 RNA 0.27 TCGA-AZ-6598-01 20 2637818 2637818 C T NOP56 Missense_Mutation p.A458V 0.51 tolerated(0.15) possibly_damaging(0.483) TCGA-AZ-6598-01 20 3018900 3018900 C T PTPRA 3'UTR 0.59 TCGA-AZ-6598-01 20 30232801 30232801 A - COX4I2 3'UTR 0.45 TCGA-AZ-6598-01 20 30388907 30388907 C T TPX2 3'UTR 0.11 TCGA-AZ-6598-01 20 30789952 30789952 G - PLAGL2 Frame_Shift_Del p.W11Gfs*15 0.27 TCGA-AZ-6598-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.29 TCGA-AZ-6598-01 20 3147820 3147820 G - LZTS3 5'UTR 0.20 TCGA-AZ-6598-01 20 31583498 31583499 - C SUN5 Frame_Shift_Ins p.E154Gfs*8 0.22 TCGA-AZ-6598-01 20 3215425 3215425 A - SLC4A11 Frame_Shift_Del p.F111Lfs*32 0.10 TCGA-AZ-6598-01 20 3218743 3218743 G A SLC4A11 5'UTR 0.32 TCGA-AZ-6598-01 20 334177 334177 A G NRSN2 Silent p.S171S 0.15 TCGA-AZ-6598-01 20 334207 334207 A G NRSN2 Silent p.S181S 0.13 TCGA-AZ-6598-01 20 33764233 33764233 C T PROCR Silent p.S195S 0.56 TCGA-AZ-6598-01 20 34022053 34022053 C T GDF5OS Nonsense_Mutation p.R33* 0.28 TCGA-AZ-6598-01 20 34025411 34025412 - G GDF5 Frame_Shift_Ins p.R100Qfs*6 0.23 TCGA-AZ-6598-01 20 34144790 34144790 C T ERGIC3 Missense_Mutation p.A314V 0.54 tolerated(0.62) benign(0.002) TCGA-AZ-6598-01 20 34526852 34526852 G A PHF20 Missense_Mutation p.R845H 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 20 35422298 35422298 C T SOGA1 Missense_Mutation p.R1396H 0.12 tolerated(0.08) probably_damaging(0.993) TCGA-AZ-6598-01 20 35563544 35563544 C T SAMHD1 Missense_Mutation p.V133I 0.25 tolerated(0.96) benign(0.003) TCGA-AZ-6598-01 20 3653222 3653222 C - ADAM33 Frame_Shift_Del p.A455Pfs*14 0.29 TCGA-AZ-6598-01 20 36627712 36627712 G T TTI1 Missense_Mutation p.L891M 0.30 tolerated(0.06) probably_damaging(0.972) TCGA-AZ-6598-01 20 37353686 37353686 G A SLC32A1 Missense_Mutation p.E107K 0.13 deleterious(0.04) benign(0.007) TCGA-AZ-6598-01 20 37356747 37356747 G A SLC32A1 Missense_Mutation p.C348Y 0.53 deleterious(0) probably_damaging(0.954) TCGA-AZ-6598-01 20 37464776 37464776 G A PPP1R16B Missense_Mutation p.V70M 0.36 deleterious(0) probably_damaging(0.981) TCGA-AZ-6598-01 20 3765819 3765819 C - CENPB Frame_Shift_Del p.E438Kfs*43 0.42 TCGA-AZ-6598-01 20 39831930 39831930 T C ZHX3 Missense_Mutation p.S543G 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 20 42162976 42162976 G T L3MBTL1 Missense_Mutation p.R529M 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 20 43052955 43052955 A G HNF4A Intron 0.32 TCGA-AZ-6598-01 20 43348542 43348542 G A WISP2 Missense_Mutation p.R22H 0.62 deleterious(0.03) benign(0.051) TCGA-AZ-6598-01 20 43384633 43384633 G - RIMS4 3'UTR 0.37 TCGA-AZ-6598-01 20 43738356 43738356 G A WFDC5 3'UTR 0.66 TCGA-AZ-6598-01 20 43881730 43881731 - G SLPI Frame_Shift_Ins p.N103Qfs*4 0.28 TCGA-AZ-6598-01 20 43934163 43934163 C T MATN4 Silent p.Q20Q 0.13 TCGA-AZ-6598-01 20 44441911 44441911 G T UBE2C Intron 0.62 TCGA-AZ-6598-01 20 44505413 44505413 G A ZSWIM3 Silent p.E72E 0.07 TCGA-AZ-6598-01 20 44693778 44693778 T C NCOA5 Missense_Mutation p.Q240R 0.27 tolerated(0.17) probably_damaging(0.998) TCGA-AZ-6598-01 20 44841667 44841667 G A CDH22 Silent p.S333S 0.55 TCGA-AZ-6598-01 20 44987079 44987079 G T SLC35C2 Missense_Mutation p.L23I 0.29 tolerated(0.13) benign(0.013) TCGA-AZ-6598-01 20 45315634 45315634 G - TP53RK Frame_Shift_Del p.L174Wfs*4 0.41 TCGA-AZ-6598-01 20 45875028 45875028 T - ZMYND8 Frame_Shift_Del p.S670Afs*37 0.27 TCGA-AZ-6598-01 20 47262417 47262417 C T PREX1 Missense_Mutation p.D1162N 0.07 deleterious(0) probably_damaging(0.986) TCGA-AZ-6598-01 20 4866511 4866511 G A SLC23A2 Missense_Mutation p.A176V 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-6598-01 20 49626108 49626108 C A KCNG1 Missense_Mutation p.E256D 0.15 tolerated(0.34) probably_damaging(0.996) TCGA-AZ-6598-01 20 50273621 50273621 G A ATP9A Silent p.S454S 0.23 TCGA-AZ-6598-01 20 50776806 50776806 T C ZFP64 Missense_Mutation p.T207A 0.14 tolerated(0.85) benign(0.01) TCGA-AZ-6598-01 20 50808270 50808270 C - ZFP64 5'UTR 0.24 TCGA-AZ-6598-01 20 52188261 52188261 T - ZNF217 Intron 0.32 TCGA-AZ-6598-01 20 55012282 55012282 C T CASS4 Silent p.S33S 0.19 TCGA-AZ-6598-01 20 55208576 55208576 T C TFAP2C Missense_Mutation p.S252P 0.15 deleterious(0) probably_damaging(0.98) TCGA-AZ-6598-01 20 56179643 56179643 C A ZBP1 Nonsense_Mutation p.G426* 0.57 TCGA-AZ-6598-01 20 56186913 56186913 G T ZBP1 Silent p.P248P 0.11 TCGA-AZ-6598-01 20 56826875 56826875 G A PPP4R1L Missense_Mutation p.R18C 0.51 deleterious(0) probably_damaging(0.924) TCGA-AZ-6598-01 20 57045763 57045763 G A APCDD1L Silent p.C30C 0.11 TCGA-AZ-6598-01 20 57428424 57428424 G A GNAS Missense_Mutation p.G35E 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6598-01 20 60294270 60294270 T - RP11-429E11.3 5'UTR 0.10 TCGA-AZ-6598-01 20 60318775 60318775 C T CDH4 Missense_Mutation p.T109I 0.23 deleterious(0.03) possibly_damaging(0.551) TCGA-AZ-6598-01 20 60572692 60572692 G A TAF4 Missense_Mutation p.R1002W 0.37 probably_damaging(0.997) TCGA-AZ-6598-01 20 60908505 60908505 G A LAMA5 Silent p.Y1018Y 0.27 TCGA-AZ-6598-01 20 60992359 60992359 C T RBBP8NL Missense_Mutation p.E41K 0.59 deleterious(0) probably_damaging(0.921) TCGA-AZ-6598-01 20 61542172 61542172 C T DIDO1 Missense_Mutation p.D265N 0.34 benign(0.087) TCGA-AZ-6598-01 20 61834725 61834725 G A YTHDF1 Silent p.G189G 0.37 TCGA-AZ-6598-01 20 62119735 62119735 G A EEF1A2 Silent p.G436G 0.25 TCGA-AZ-6598-01 20 62195086 62195086 C T HELZ2 Missense_Mutation p.A1697T 0.32 tolerated(0.67) benign(0.01) TCGA-AZ-6598-01 20 62294196 62294196 T C RTEL1 Silent p.R188R 0.30 TCGA-AZ-6598-01 20 62493553 62493553 C T ABHD16B Silent p.A220A 0.35 TCGA-AZ-6598-01 20 62521332 62521332 G A TPD52L2 3'UTR 0.29 TCGA-AZ-6598-01 20 62597938 62597938 G T ZNF512B Missense_Mutation p.P197H 0.56 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AZ-6598-01 20 62598228 62598228 C - ZNF512B Splice_Site p.X131_splice 0.10 TCGA-AZ-6598-01 20 62630970 62630970 C T PRPF6 Missense_Mutation p.A294V 0.28 deleterious(0) possibly_damaging(0.797) TCGA-AZ-6598-01 20 6759209 6759209 G A BMP2 Missense_Mutation p.A222T 0.57 tolerated(0.57) benign(0.001) TCGA-AZ-6598-01 21 14982904 14982904 G A POTED Missense_Mutation p.A119T 0.73 tolerated(0.2) benign(0.003) TCGA-AZ-6598-01 21 15516777 15516777 A - LIPI Intron 0.39 TCGA-AZ-6598-01 21 15918638 15918638 A - SAMSN1 Intron 0.14 TCGA-AZ-6598-01 21 19666616 19666616 C T TMPRSS15 Nonsense_Mutation p.W819* 0.45 TCGA-AZ-6598-01 21 28306844 28306844 T C ADAMTS5 Missense_Mutation p.K544E 0.51 tolerated(1) benign(0.349) TCGA-AZ-6598-01 21 28315836 28315836 G A ADAMTS5 Missense_Mutation p.S423F 0.39 deleterious(0.01) probably_damaging(1) TCGA-AZ-6598-01 21 32617908 32617908 C T TIAM1 Missense_Mutation p.A494T 0.45 deleterious(0) probably_damaging(0.994) TCGA-AZ-6598-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.31 TCGA-AZ-6598-01 21 34012054 34012055 - G SYNJ1 Frame_Shift_Ins p.Q1248Tfs*14 0.27 TCGA-AZ-6598-01 21 34030089 34030089 G A SYNJ1 Missense_Mutation p.R839C 0.36 deleterious(0) probably_damaging(0.954) TCGA-AZ-6598-01 21 34931551 34931551 G A SON Missense_Mutation p.A2113T 0.42 unknown(0) TCGA-AZ-6598-01 21 34948765 34948765 C T SON 3'UTR 0.47 TCGA-AZ-6598-01 21 34958406 34958406 G A DONSON Nonsense_Mutation p.R162* 0.47 TCGA-AZ-6598-01 21 35260480 35260480 G A ITSN1 Missense_Mutation p.R1681H 0.40 deleterious(0.04) probably_damaging(0.943) TCGA-AZ-6598-01 21 35472351 35472351 C T SLC5A3 3'UTR 0.41 TCGA-AZ-6598-01 21 37425916 37425916 T C SETD4 Missense_Mutation p.T58A 0.32 deleterious(0) probably_damaging(0.967) TCGA-AZ-6598-01 21 38520856 38520856 G A TTC3 Missense_Mutation p.R676H 0.38 deleterious(0) probably_damaging(0.915) TCGA-AZ-6598-01 21 39087139 39087139 A - KCNJ6 Frame_Shift_Del p.F107Lfs*3 0.28 TCGA-AZ-6598-01 21 40762730 40762730 C T WRB Missense_Mutation p.A70V 0.35 tolerated(0.06) probably_damaging(0.934) TCGA-AZ-6598-01 21 41416204 41416204 T C DSCAM Splice_Site p.X1729_splice 0.31 TCGA-AZ-6598-01 21 41514615 41514615 G - DSCAM Frame_Shift_Del p.E1093Kfs*6 0.30 TCGA-AZ-6598-01 21 41559142 41559142 G A DSCAM Missense_Mutation p.R899C 0.37 deleterious(0) probably_damaging(0.985) TCGA-AZ-6598-01 21 42830718 42830718 C T MX1 3'UTR 0.33 TCGA-AZ-6598-01 21 43171360 43171360 G A RIPK4 Missense_Mutation p.H174Y 0.45 deleterious(0.01) possibly_damaging(0.478) TCGA-AZ-6598-01 21 43277407 43277407 G A PRDM15 Nonsense_Mutation p.R421* 0.39 TCGA-AZ-6598-01 21 43782568 43782568 G A TFF1 3'UTR 0.30 TCGA-AZ-6598-01 21 45389133 45389133 C T AGPAT3 Silent p.R161R 0.42 TCGA-AZ-6598-01 21 45648808 45648808 G A ICOSLG 3'UTR 0.53 TCGA-AZ-6598-01 21 45837907 45837907 C - TRPM2 Frame_Shift_Del p.F1084Sfs*16 0.33 TCGA-AZ-6598-01 21 45987773 45987773 G - TSPEAR Frame_Shift_Del p.R67Afs*3 0.35 TCGA-AZ-6598-01 21 46011495 46011495 C T KRTAP10-6 Missense_Mutation p.A291T 0.43 tolerated(0.23) unknown(0) TCGA-AZ-6598-01 21 46077889 46077889 A G KRTAP12-3 5'UTR 0.08 TCGA-AZ-6598-01 21 46917559 46917559 C - COL18A1 Frame_Shift_Del p.G1072Dfs*17 0.40 TCGA-AZ-6598-01 21 46924329 46924329 G - COL18A1 Splice_Site p.X1091_splice 0.22 TCGA-AZ-6598-01 21 47320983 47320983 G A PCBP3 Missense_Mutation p.A99T 0.42 deleterious(0.03) possibly_damaging(0.483) TCGA-AZ-6598-01 21 47349856 47349856 C A PCBP3 Missense_Mutation p.A248D 0.45 deleterious(0) possibly_damaging(0.812) TCGA-AZ-6598-01 21 47406575 47406575 G T COL6A1 Silent p.S188S 0.39 TCGA-AZ-6598-01 21 47423461 47423461 C T COL6A1 Missense_Mutation p.A874V 0.67 deleterious(0.01) possibly_damaging(0.776) TCGA-AZ-6598-01 21 47627461 47627461 C T LSS Missense_Mutation p.G450S 0.30 tolerated(0.05) benign(0.369) TCGA-AZ-6598-01 21 47809221 47809221 C T PCNT Missense_Mutation p.R1239C 0.10 possibly_damaging(0.876) TCGA-AZ-6598-01 21 47865202 47865202 A G PCNT Missense_Mutation p.T3325A 0.35 benign(0.001) TCGA-AZ-6598-01 21 47986536 47986536 G A DIP2A Missense_Mutation p.R1468Q 0.39 deleterious(0.01) probably_damaging(0.968) TCGA-AZ-6598-01 21 48080764 48080764 T - PRMT2 Frame_Shift_Del p.S286Qfs*9 0.49 TCGA-AZ-6598-01 22 17308830 17308831 - A HSFY1P1 RNA 0.39 TCGA-AZ-6598-01 22 17488852 17488852 G - GAB4 Frame_Shift_Del p.E52Rfs*4 0.16 TCGA-AZ-6598-01 22 17600415 17600415 C T CECR6 Missense_Mutation p.G535S 0.17 tolerated_low_confidence(0.18) benign(0.099) TCGA-AZ-6598-01 22 18138452 18138452 T - BCL2L13 5'UTR 0.20 TCGA-AZ-6598-01 22 18209634 18209637 AGAA - BCL2L13 Frame_Shift_Del p.E265Afs*6 0.48 TCGA-AZ-6598-01 22 19124913 19124913 C - DGCR14 Frame_Shift_Del p.E320Rfs*7 0.35 TCGA-AZ-6598-01 22 19709430 19709430 C T SEPT5 Silent p.C300C 0.46 TCGA-AZ-6598-01 22 20073571 20073571 G T DGCR8 Missense_Mutation p.A29S 0.37 deleterious_low_confidence(0.05) benign(0.014) TCGA-AZ-6598-01 22 20760755 20760755 G A ZNF74 Missense_Mutation p.G478S 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 22 21084246 21084246 C T PI4KA Missense_Mutation p.A1448T 0.38 tolerated(0.31) benign(0.001) TCGA-AZ-6598-01 22 21088699 21088700 - G PI4KA Frame_Shift_Ins p.H1295Pfs*13 0.22 TCGA-AZ-6598-01 22 21984212 21984212 G T YDJC Missense_Mutation p.A31D 0.57 tolerated(0.1) possibly_damaging(0.598) TCGA-AZ-6598-01 22 22730573 22730573 T G IGLV5-45 Missense_Mutation p.L23R 0.28 deleterious(0) possibly_damaging(0.786) TCGA-AZ-6598-01 22 23055547 23055547 C T IGLV3-21 Silent p.S70S 0.38 TCGA-AZ-6598-01 22 24567742 24567742 C A CABIN1 Missense_Mutation p.P1940H 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-6598-01 22 24629944 24629944 C T GGT5 Missense_Mutation p.V68M 0.38 deleterious(0.03) possibly_damaging(0.532) TCGA-AZ-6598-01 22 25150135 25150135 C T PIWIL3 Missense_Mutation p.E275K 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 22 25570256 25570256 C - KIAA1671 Frame_Shift_Del p.S1569Afs*58 0.37 TCGA-AZ-6598-01 22 26117252 26117252 A - ADRBK2 Frame_Shift_Del p.N599Ifs*3 0.31 TCGA-AZ-6598-01 22 26399266 26399266 G A MYO18B Missense_Mutation p.R2108Q 0.36 tolerated(0.47) benign(0.004) TCGA-AZ-6598-01 22 26743754 26743754 C T SEZ6L Missense_Mutation p.T761M 0.44 deleterious(0.04) benign(0.269) TCGA-AZ-6598-01 22 26902881 26902881 A G TFIP11 Missense_Mutation p.S75P 0.36 deleterious(0.02) probably_damaging(0.912) TCGA-AZ-6598-01 22 28194930 28194930 C A MN1 Missense_Mutation p.Q534H 0.42 possibly_damaging(0.891) TCGA-AZ-6598-01 22 28503098 28503098 C T TTC28 Missense_Mutation p.R912H 0.45 tolerated(0.28) benign(0.008) TCGA-AZ-6598-01 22 29533511 29533511 G A KREMEN1 Silent p.E271E 0.25 TCGA-AZ-6598-01 22 29707437 29707437 G A GAS2L1 3'UTR 0.27 TCGA-AZ-6598-01 22 29737538 29737538 T C AP1B1 Missense_Mutation p.E583G 0.31 tolerated(0.46) benign(0.004) TCGA-AZ-6598-01 22 29745279 29745279 G A AP1B1 Silent p.Y455Y 0.49 TCGA-AZ-6598-01 22 30127346 30127347 AG - ZMAT5 Intron 0.59 TCGA-AZ-6598-01 22 30737865 30737865 G T SF3A1 Missense_Mutation p.P296H 0.38 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 22 31301971 31301971 G A OSBP2 Silent p.K841K 0.44 TCGA-AZ-6598-01 22 31322775 31322776 CT - MORC2 3'UTR 0.13 TCGA-AZ-6598-01 22 31333570 31333570 C T MORC2 Missense_Mutation p.D438N 0.36 tolerated(0.07) possibly_damaging(0.537) TCGA-AZ-6598-01 22 31524489 31524489 G A INPP5J Missense_Mutation p.R313H 0.14 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 22 33255323 33255324 - C TIMP3 Frame_Shift_Ins p.D202Gfs*2 0.36 TCGA-AZ-6598-01 22 33670350 33670350 C - LARGE 3'UTR 0.35 TCGA-AZ-6598-01 22 33968141 33968142 - T LARGE Intron 0.24 TCGA-AZ-6598-01 22 36587803 36587803 G A APOL4 Missense_Mutation p.L125F 0.36 deleterious(0.01) possibly_damaging(0.548) TCGA-AZ-6598-01 22 36689866 36689866 C T MYH9 Missense_Mutation p.S1294N 0.45 benign(0.02) TCGA-AZ-6598-01 22 38062806 38062806 C T PDXP 3'UTR 0.42 TCGA-AZ-6598-01 22 38120111 38120111 C A TRIOBP Silent p.S516S 0.07 TCGA-AZ-6598-01 22 38203114 38203114 G - H1F0 3'UTR 0.37 TCGA-AZ-6598-01 22 39529791 39529792 - T CBX7 3'UTR 0.41 TCGA-AZ-6598-01 22 41303642 41303642 C A XPNPEP3 Missense_Mutation p.L282I 0.38 tolerated(0.1) possibly_damaging(0.591) TCGA-AZ-6598-01 22 41620170 41620170 C T L3MBTL2 Silent p.D363D 0.38 TCGA-AZ-6598-01 22 41626154 41626154 C T L3MBTL2 Missense_Mutation p.R673C 0.37 tolerated_low_confidence(0.17) benign(0) TCGA-AZ-6598-01 22 41626250 41626250 G A L3MBTL2 Missense_Mutation p.D705N 0.34 tolerated_low_confidence(0.23) benign(0.001) TCGA-AZ-6598-01 22 42091498 42091498 G A C22orf46 3'UTR 0.46 TCGA-AZ-6598-01 22 42095605 42095605 G A MEI1 Silent p.A21A 0.50 TCGA-AZ-6598-01 22 42209294 42209294 G A CCDC134 Missense_Mutation p.A113T 0.09 deleterious(0) probably_damaging(0.995) TCGA-AZ-6598-01 22 43088846 43088846 G A A4GALT 3'UTR 0.48 TCGA-AZ-6598-01 22 43089441 43089441 C T A4GALT Missense_Mutation p.V173M 0.38 deleterious(0) probably_damaging(0.979) TCGA-AZ-6598-01 22 43575954 43575954 C T TTLL12 Missense_Mutation p.R200Q 0.26 tolerated(0.19) benign(0.332) TCGA-AZ-6598-01 22 43821075 43821075 C T MPPED1 Silent p.S28S 0.44 TCGA-AZ-6598-01 22 44224992 44224992 G A SULT4A1 Silent p.C230C 0.29 TCGA-AZ-6598-01 22 46773100 46773100 G A CELSR1 Missense_Mutation p.A2481V 0.55 tolerated(0.67) benign(0.009) TCGA-AZ-6598-01 22 50279404 50279404 C T ZBED4 Silent p.S698S 0.43 TCGA-AZ-6598-01 22 50297991 50297991 G - ALG12 Frame_Shift_Del p.Q386Rfs*75 0.34 TCGA-AZ-6598-01 22 50655256 50655256 C T SELO Silent p.L547L 0.35 TCGA-AZ-6598-01 22 50660511 50660511 A G TUBGCP6 Silent p.S810S 0.52 TCGA-AZ-6598-01 22 50664524 50664524 G A TUBGCP6 Silent p.Y596Y 0.32 TCGA-AZ-6598-01 22 50722392 50722392 C T PLXNB2 Missense_Mutation p.R764H 0.37 tolerated(0.17) probably_damaging(0.958) TCGA-AZ-6598-01 22 50728600 50728600 G A PLXNB2 Silent p.S138S 0.56 TCGA-AZ-6598-01 22 50877036 50877036 C - PPP6R2 Frame_Shift_Del p.H634Mfs*72 0.30 TCGA-AZ-6598-01 22 50878421 50878421 G T PPP6R2 Missense_Mutation p.V747L 0.38 deleterious(0.02) possibly_damaging(0.477) TCGA-AZ-6598-01 22 50899059 50899059 G A SBF1 Missense_Mutation p.P1017L 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 22 50942778 50942778 C T LMF2 Missense_Mutation p.G570E 0.45 tolerated(0.19) benign(0.033) TCGA-AZ-6598-01 22 50960448 50960448 G A NCAPH2 Missense_Mutation p.R381Q 0.38 deleterious(0.02) possibly_damaging(0.852) TCGA-AZ-6598-01 22 50987858 50987858 C T KLHDC7B Silent p.Y421Y 0.46 TCGA-AZ-6598-01 22 51049218 51049218 G A MAPK8IP2 3'UTR 0.11 TCGA-AZ-6598-01 2 100027223 100027223 C T REV1 Missense_Mutation p.R760Q 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 2 101656813 101656813 G A TBC1D8 Missense_Mutation p.R288W 0.40 deleterious(0) probably_damaging(0.953) TCGA-AZ-6598-01 2 102505286 102505286 C A MAP4K4 Silent p.G1175G 0.53 TCGA-AZ-6598-01 2 102507850 102507850 C A MAP4K4 3'Flank 0.41 TCGA-AZ-6598-01 2 10580824 10580824 G A ODC1 3'UTR 0.42 TCGA-AZ-6598-01 2 107459901 107459901 C A ST6GAL2 Missense_Mutation p.R178L 0.37 benign(0.001) TCGA-AZ-6598-01 2 109429147 109429147 C T CCDC138 Missense_Mutation p.R306C 0.42 deleterious(0) possibly_damaging(0.835) TCGA-AZ-6598-01 2 111666464 111666464 C T ACOXL Missense_Mutation p.A296V 0.42 deleterious(0) probably_damaging(0.914) TCGA-AZ-6598-01 2 112944934 112944934 C T FBLN7 Missense_Mutation p.R391W 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 2 113332472 113332472 C T POLR1B Silent p.D858D 0.38 TCGA-AZ-6598-01 2 113343582 113343582 T G CHCHD5 Missense_Mutation p.C12G 0.40 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 2 113994260 113994260 G A PAX8 Silent p.D272D 0.55 TCGA-AZ-6598-01 2 114257061 114257061 C T FOXD4L1 Silent p.G76G 0.13 TCGA-AZ-6598-01 2 118715997 118715997 G C CCDC93 Missense_Mutation p.R317G 0.37 deleterious(0) benign(0.177) TCGA-AZ-6598-01 2 119914366 119914366 C - C1QL2 3'UTR 0.26 TCGA-AZ-6598-01 2 120385299 120385299 G A PCDP1 Silent p.S529S 0.38 TCGA-AZ-6598-01 2 122204962 122204962 C T CLASP1 Silent p.T621T 0.34 TCGA-AZ-6598-01 2 128408537 128408537 C T GPR17 Silent p.A104A 0.11 TCGA-AZ-6598-01 2 128459975 128459975 A - WDR33 3'UTR 0.09 TCGA-AZ-6598-01 2 128699520 128699520 C - SAP130 3'UTR 0.48 TCGA-AZ-6598-01 2 130832317 130832317 G A POTEF Missense_Mutation p.R910C 0.25 tolerated_low_confidence(0.09) probably_damaging(0.991) TCGA-AZ-6598-01 2 130921967 130921967 T - SMPD4 Frame_Shift_Del p.M321Cfs*53 0.26 TCGA-AZ-6598-01 2 130939427 130939427 C - SMPD4 5'UTR 0.73 TCGA-AZ-6598-01 2 131522342 131522342 G - AMER3 3'UTR 0.32 TCGA-AZ-6598-01 2 131673168 131673168 C T ARHGEF4 5'Flank 0.42 TCGA-AZ-6598-01 2 131674222 131674222 G A ARHGEF4 5'Flank 0.40 TCGA-AZ-6598-01 2 133403820 133403820 G A LYPD1 Missense_Mutation p.A75V 0.41 deleterious(0.01) benign(0.241) TCGA-AZ-6598-01 2 136872513 136872513 G T CXCR4 Missense_Mutation p.L333I 0.37 deleterious(0.02) probably_damaging(0.963) TCGA-AZ-6598-01 2 138739107 138739107 T - HNMT Intron 0.32 TCGA-AZ-6598-01 2 141032034 141032034 C - LRP1B Frame_Shift_Del p.H4368Tfs*4 0.33 TCGA-AZ-6598-01 2 144709602 144709602 T - GTDC1 Frame_Shift_Del p.R414Gfs*12 0.32 TCGA-AZ-6598-01 2 145157128 145157128 G A ZEB2 Silent p.S542S 0.35 TCGA-AZ-6598-01 2 148680663 148680663 G A ACVR2A Missense_Mutation p.R400H 0.39 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 2 149240764 149240764 C T MBD5 Silent p.G868G 0.38 TCGA-AZ-6598-01 2 149840201 149840201 G T KIF5C Missense_Mutation p.R546M 0.39 deleterious(0) probably_damaging(0.986) TCGA-AZ-6598-01 2 149847637 149847637 C T KIF5C Silent p.S610S 0.40 TCGA-AZ-6598-01 2 15506734 15506734 G A NBAS Silent p.L1263L 0.40 TCGA-AZ-6598-01 2 15753362 15753362 T C DDX1 Missense_Mutation p.I324T 0.24 deleterious(0.02) benign(0.314) TCGA-AZ-6598-01 2 159651927 159651927 G T DAPL1 Nonsense_Mutation p.G15* 0.43 TCGA-AZ-6598-01 2 163027347 163027347 T - FAP 3'UTR 0.47 TCGA-AZ-6598-01 2 163144790 163144790 T C IFIH1 Missense_Mutation p.Q317R 0.42 tolerated(0.57) benign(0.009) TCGA-AZ-6598-01 2 164468298 164468298 G A FIGN Missense_Mutation p.T15M 0.38 deleterious(0) probably_damaging(0.991) TCGA-AZ-6598-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.41 TCGA-AZ-6598-01 2 166003267 166003267 T - SCN3A Frame_Shift_Del p.K551Nfs*10 0.35 TCGA-AZ-6598-01 2 166854673 166854673 G A SCN1A Missense_Mutation p.P1451S 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 2 168115586 168115586 A G XIRP2 3'UTR 0.38 TCGA-AZ-6598-01 2 168994658 168994658 T - STK39 Frame_Shift_Del p.K305Sfs*28 0.29 TCGA-AZ-6598-01 2 170044552 170044552 G A LRP2 Missense_Mutation p.R3086C 0.37 possibly_damaging(0.849) TCGA-AZ-6598-01 2 170387161 170387161 T C FASTKD1 Missense_Mutation p.H793R 0.32 tolerated(0.05) probably_damaging(0.955) TCGA-AZ-6598-01 2 170417251 170417251 C T FASTKD1 Missense_Mutation p.R206Q 0.40 tolerated(1) benign(0.001) TCGA-AZ-6598-01 2 170912027 170912027 C T UBR3 Missense_Mutation p.A1573V 0.09 tolerated(1) benign(0.006) TCGA-AZ-6598-01 2 170938525 170938525 T - UBR3 3'UTR 0.55 TCGA-AZ-6598-01 2 171822458 171822458 G A GORASP2 Missense_Mutation p.A393T 0.35 tolerated_low_confidence(0.39) benign(0.047) TCGA-AZ-6598-01 2 171906377 171906377 G A TLK1 Silent p.G309G 0.40 TCGA-AZ-6598-01 2 172314493 172314493 G A DCAF17 Missense_Mutation p.V214I 0.35 tolerated(0.14) benign(0.022) TCGA-AZ-6598-01 2 172641873 172641873 C T SLC25A12 Missense_Mutation p.E650K 0.38 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 2 172841177 172841177 G A HAT1 Missense_Mutation p.R302Q 0.41 tolerated(0.33) benign(0) TCGA-AZ-6598-01 2 175289241 175289241 C T SCRN3 Missense_Mutation p.S319L 0.43 tolerated(0.21) benign(0.002) TCGA-AZ-6598-01 2 175436871 175436871 G - WIPF1 Frame_Shift_Del p.P221Lfs*20 0.37 TCGA-AZ-6598-01 2 175618367 175618367 G A CHRNA1 Silent p.P239P 0.48 TCGA-AZ-6598-01 2 176982035 176982035 C T HOXD10 Silent p.Y158Y 0.39 TCGA-AZ-6598-01 2 176995442 176995442 G T HOXD8 Silent p.P116P 0.28 TCGA-AZ-6598-01 2 178483235 178483235 G A TTC30A Silent p.A65A 0.40 TCGA-AZ-6598-01 2 179358601 179358601 C T PLEKHA3 Missense_Mutation p.S112L 0.31 tolerated(0.12) benign(0.31) TCGA-AZ-6598-01 2 179439428 179439428 G A TTN Missense_Mutation p.P23811S 0.37 TCGA-AZ-6598-01 2 179455414 179455414 A - TTN Frame_Shift_Del p.F20346Lfs*8 0.29 TCGA-AZ-6598-01 2 179605917 179605917 T C TTN Missense_Mutation p.N4015D 0.15 TCGA-AZ-6598-01 2 179615878 179615879 - T TTN Intron 0.35 TCGA-AZ-6598-01 2 17998175 17998175 C T MSGN1 Silent p.S130S 0.40 TCGA-AZ-6598-01 2 180036889 180036889 C T SESTD1 Silent p.T109T 0.45 TCGA-AZ-6598-01 2 180056530 180056530 T - SESTD1 Frame_Shift_Del p.K13Nfs*2 0.35 TCGA-AZ-6598-01 2 182344950 182344950 T - ITGA4 Frame_Shift_Del p.L239* 0.32 TCGA-AZ-6598-01 2 182787134 182787134 C T SSFA2 Missense_Mutation p.R1224W 0.30 deleterious(0) probably_damaging(0.979) TCGA-AZ-6598-01 2 183584885 183584885 G A DNAJC10 Missense_Mutation p.R119H 0.08 tolerated(0.06) benign(0.045) TCGA-AZ-6598-01 2 183995195 183995195 C T NUP35 Silent p.G87G 0.36 TCGA-AZ-6598-01 2 187698691 187698691 G A ZSWIM2 Silent p.H270H 0.32 TCGA-AZ-6598-01 2 1906927 1906927 T C MYT1L Missense_Mutation p.N651D 0.09 tolerated(0.06) benign(0.098) TCGA-AZ-6598-01 2 190924998 190924998 A G MSTN Silent p.P179P 0.41 TCGA-AZ-6598-01 2 191797646 191797646 T - GLS Intron 0.32 TCGA-AZ-6598-01 2 1947058 1947058 C T MYT1L Silent p.Q67Q 0.37 TCGA-AZ-6598-01 2 196599951 196599951 T A SLC39A10 3'UTR 0.47 TCGA-AZ-6598-01 2 196729035 196729035 C T DNAH7 Silent p.K2448K 0.44 TCGA-AZ-6598-01 2 20135320 20135320 C T WDR35 Missense_Mutation p.R831H 0.36 tolerated(0.06) probably_damaging(0.996) TCGA-AZ-6598-01 2 201802652 201802652 C T ORC2 Missense_Mutation p.R164H 0.40 tolerated(0.57) benign(0) TCGA-AZ-6598-01 2 201802657 201802657 T A ORC2 Silent p.A162A 0.06 TCGA-AZ-6598-01 2 202131302 202131302 G A CASP8 Silent p.P90P 0.41 TCGA-AZ-6598-01 2 202899867 202899867 C T FZD7 Missense_Mutation p.S166L 0.69 deleterious(0.01) benign(0.024) TCGA-AZ-6598-01 2 207171241 207171241 C T ZDBF2 Silent p.S663S 0.41 TCGA-AZ-6598-01 2 207171574 207171574 G A ZDBF2 Silent p.R774R 0.41 TCGA-AZ-6598-01 2 208461878 208461878 T - CREB1 3'UTR 0.27 TCGA-AZ-6598-01 2 20870958 20870958 T C GDF7 Missense_Mutation p.Y376H 0.32 tolerated(0.09) probably_damaging(0.992) TCGA-AZ-6598-01 2 209025695 209025695 C T CRYGA Missense_Mutation p.E120K 0.36 deleterious(0.04) benign(0.239) TCGA-AZ-6598-01 2 209113130 209113130 T C IDH1 Missense_Mutation p.K126R 0.41 deleterious_low_confidence(0.03) benign(0.031) TCGA-AZ-6598-01 2 209190376 209190376 G A PIKFYVE Silent p.P947P 0.43 TCGA-AZ-6598-01 2 209191042 209191042 T C PIKFYVE Silent p.P1169P 0.39 TCGA-AZ-6598-01 2 209215501 209215501 C T PIKFYVE Missense_Mutation p.S1814L 0.35 deleterious(0) possibly_damaging(0.87) TCGA-AZ-6598-01 2 210703977 210703977 C T UNC80 Missense_Mutation p.R1025W 0.29 probably_damaging(0.995) TCGA-AZ-6598-01 2 210874452 210874455 CTTT - RPE Frame_Shift_Del p.F66Lfs*5 0.37 TCGA-AZ-6598-01 2 21225553 21225553 T G APOB Missense_Mutation p.Q4247H 0.40 benign(0.154) TCGA-AZ-6598-01 2 21235390 21235390 T G APOB Missense_Mutation p.K1450N 0.35 probably_damaging(0.994) TCGA-AZ-6598-01 2 213914467 213914467 C T IKZF2 Missense_Mutation p.A182T 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 2 215440577 215440577 A - VWC2L 3'UTR 0.25 TCGA-AZ-6598-01 2 215823791 215823791 A G ABCA12 Missense_Mutation p.Y1966H 0.36 tolerated(0.13) probably_damaging(0.949) TCGA-AZ-6598-01 2 215884426 215884426 C T ABCA12 Missense_Mutation p.G461E 0.22 tolerated(0.15) benign(0.007) TCGA-AZ-6598-01 2 216249662 216249662 C T FN1 Silent p.A1550A 0.14 TCGA-AZ-6598-01 2 216270966 216270966 G T FN1 Missense_Mutation p.T994K 0.35 deleterious(0.01) benign(0.307) TCGA-AZ-6598-01 2 217234620 217234620 G A MARCH4 Missense_Mutation p.P122S 0.41 tolerated_low_confidence(1) benign(0.002) TCGA-AZ-6598-01 2 217340051 217340051 C A SMARCAL1 Nonsense_Mutation p.C768* 0.10 TCGA-AZ-6598-01 2 219137471 219137471 G - PNKD Intron 0.32 TCGA-AZ-6598-01 2 219449404 219449404 T A RQCD1 Silent p.R130R 0.48 TCGA-AZ-6598-01 2 219509270 219509270 G A ZNF142 Missense_Mutation p.P657S 0.32 tolerated(0.15) possibly_damaging(0.641) TCGA-AZ-6598-01 2 219920009 219920009 G - IHH Frame_Shift_Del p.Q386Sfs*11 0.30 TCGA-AZ-6598-01 2 219920368 219920368 G - IHH Frame_Shift_Del p.P266Hfs*99 0.34 TCGA-AZ-6598-01 2 220047041 220047041 G A FAM134A Missense_Mutation p.G441D 0.43 tolerated(0.86) benign(0) TCGA-AZ-6598-01 2 220085844 220085844 C T ATG9A Missense_Mutation p.A776T 0.40 tolerated_low_confidence(0.41) benign(0.001) TCGA-AZ-6598-01 2 220085946 220085946 C T ATG9A Missense_Mutation p.A742T 0.43 tolerated(0.6) benign(0.001) TCGA-AZ-6598-01 2 220150650 220150650 T A DNAJB2 3'UTR 0.17 TCGA-AZ-6598-01 2 220173963 220173963 C - PTPRN Frame_Shift_Del p.G31Afs*75 0.51 TCGA-AZ-6598-01 2 220197269 220197269 C - RESP18 Frame_Shift_Del p.G70Afs*14 0.37 TCGA-AZ-6598-01 2 220415510 220415510 G A OBSL1 3'UTR 0.18 TCGA-AZ-6598-01 2 223559960 223559960 A G MOGAT1 Missense_Mutation p.Q269R 0.29 deleterious(0) probably_damaging(0.958) TCGA-AZ-6598-01 2 223919582 223919582 T - KCNE4 3'UTR 0.50 TCGA-AZ-6598-01 2 227660992 227660992 G A IRS1 Silent p.C821C 0.36 TCGA-AZ-6598-01 2 227661675 227661675 G A IRS1 Missense_Mutation p.R594C 0.37 deleterious(0.05) benign(0.226) TCGA-AZ-6598-01 2 228356264 228356264 C T AGFG1 Nonsense_Mutation p.R57* 0.36 TCGA-AZ-6598-01 2 230723678 230723678 C T TRIP12 Silent p.A237A 0.41 TCGA-AZ-6598-01 2 231103553 231103553 G T SP140 Intron 0.29 TCGA-AZ-6598-01 2 231941864 231941864 A - PSMD1 Frame_Shift_Del p.N355Tfs*17 0.19 TCGA-AZ-6598-01 2 233620984 233620984 C T GIGYF2 Nonsense_Mutation p.R107* 0.45 TCGA-AZ-6598-01 2 233655509 233655509 C T GIGYF2 Missense_Mutation p.R294C 0.41 probably_damaging(0.998) TCGA-AZ-6598-01 2 233677152 233677152 A G GIGYF2 Silent p.P707P 0.11 TCGA-AZ-6598-01 2 234106880 234106880 G A INPP5D Missense_Mutation p.D933N 0.49 tolerated(0.18) probably_damaging(0.924) TCGA-AZ-6598-01 2 234375757 234375757 G A DGKD Missense_Mutation p.R1111H 0.28 deleterious(0.01) benign(0.018) TCGA-AZ-6598-01 2 234602181 234602181 C T UGT1A6 Silent p.S177S 0.19 TCGA-AZ-6598-01 2 234622166 234622166 C T UGT1A5 Missense_Mutation p.P177S 0.35 deleterious(0.02) benign(0.114) TCGA-AZ-6598-01 2 234680928 234680928 G A UGT1A4 Missense_Mutation p.R443H 0.16 tolerated(0.07) benign(0.011) TCGA-AZ-6598-01 2 234851235 234851235 C T TRPM8 Missense_Mutation p.T181M 0.40 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 2 237240171 237240171 G A IQCA1 Missense_Mutation p.A735V 0.37 deleterious(0) possibly_damaging(0.621) TCGA-AZ-6598-01 2 237489859 237489859 C T ACKR3 Missense_Mutation p.R251W 0.45 deleterious(0) probably_damaging(0.973) TCGA-AZ-6598-01 2 23785144 23785144 G A KLHL29 Silent p.T26T 0.43 TCGA-AZ-6598-01 2 239049642 239049642 G A KLHL30 Missense_Mutation p.V83M 0.45 tolerated(0.3) benign(0.269) TCGA-AZ-6598-01 2 239057773 239057773 G A KLHL30 Missense_Mutation p.G489R 0.48 tolerated(0.4) benign(0.013) TCGA-AZ-6598-01 2 239079047 239079047 A - ILKAP 3'UTR 0.47 TCGA-AZ-6598-01 2 239082294 239082294 C T ILKAP Silent p.R279R 0.45 TCGA-AZ-6598-01 2 241404921 241404921 G A GPC1 Missense_Mutation p.A434T 0.24 tolerated(0.17) probably_damaging(0.948) TCGA-AZ-6598-01 2 241465787 241465787 C G ANKMY1 Silent p.G254G 0.42 TCGA-AZ-6598-01 2 241621935 241621935 G A AQP12B Missense_Mutation p.S107F 0.10 deleterious(0) possibly_damaging(0.896) TCGA-AZ-6598-01 2 241991778 241991778 C - SNED1 Frame_Shift_Del p.C661Afs*7 0.14 TCGA-AZ-6598-01 2 242135181 242135181 G T ANO7 Missense_Mutation p.R131L 0.50 tolerated(0.12) benign(0.071) TCGA-AZ-6598-01 2 242179189 242179189 C T HDLBP Missense_Mutation p.R813H 0.41 tolerated(0.06) benign(0.26) TCGA-AZ-6598-01 2 242743048 242743048 C T GAL3ST2 Missense_Mutation p.R222W 0.35 deleterious(0.01) benign(0.141) TCGA-AZ-6598-01 2 242814337 242814337 T C CXXC11 Silent p.G210G 0.12 TCGA-AZ-6598-01 2 25043682 25043682 C T ADCY3 Missense_Mutation p.G1055R 0.37 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 2 25053586 25053586 C T ADCY3 Missense_Mutation p.V722M 0.39 tolerated(0.08) benign(0.097) TCGA-AZ-6598-01 2 25062854 25062854 C - ADCY3 Frame_Shift_Del p.V415Cfs*27 0.32 TCGA-AZ-6598-01 2 25141450 25141450 C T ADCY3 Missense_Mutation p.R136H 0.40 tolerated(0.12) probably_damaging(0.973) TCGA-AZ-6598-01 2 25536860 25536860 G A DNMT3A 5'UTR 0.55 TCGA-AZ-6598-01 2 26531744 26531744 T - GPR113 3'Flank 0.40 TCGA-AZ-6598-01 2 27263359 27263359 A G TMEM214 Silent p.A646A 0.38 TCGA-AZ-6598-01 2 27302046 27302046 C T EMILIN1 Missense_Mutation p.A38V 0.44 benign(0.002) TCGA-AZ-6598-01 2 27521453 27521453 C T TRIM54 Nonsense_Mutation p.Q63* 0.51 TCGA-AZ-6598-01 2 27535452 27535452 C - MPV17 Frame_Shift_Del p.G95Afs*7 0.09 TCGA-AZ-6598-01 2 27664047 27664047 C T NRBP1 Silent p.H461H 0.40 TCGA-AZ-6598-01 2 27667085 27667085 T - KRTCAP3 Intron 0.47 TCGA-AZ-6598-01 2 27910874 27910874 C T SLC4A1AP Silent p.C730C 0.36 TCGA-AZ-6598-01 2 27930353 27930353 A - AC074091.13 3'UTR 0.50 TCGA-AZ-6598-01 2 28634864 28634866 AGG - FOSL2 In_Frame_Del p.E178del 0.35 TCGA-AZ-6598-01 2 29063458 29063458 T C SPDYA Intron 0.18 TCGA-AZ-6598-01 2 29225416 29225416 G - FAM179A Frame_Shift_Del p.G149Efs*21 0.36 TCGA-AZ-6598-01 2 29295401 29295401 G - C2orf71 Frame_Shift_Del p.P576Qfs*6 0.31 TCGA-AZ-6598-01 2 30863577 30863577 C T LCLAT1 3'UTR 0.50 TCGA-AZ-6598-01 2 32449775 32449775 G A NLRC4 Missense_Mutation p.R948C 0.47 tolerated(1) benign(0) TCGA-AZ-6598-01 2 32667451 32667451 T C BIRC6 Missense_Mutation p.V1389A 0.08 benign(0.03) TCGA-AZ-6598-01 2 33359777 33359778 - T LTBP1 Intron 0.38 TCGA-AZ-6598-01 2 36818094 36818094 C T FEZ2 Silent p.S109S 0.28 TCGA-AZ-6598-01 2 37041348 37041348 C T VIT Silent p.G642G 0.31 TCGA-AZ-6598-01 2 37317840 37317840 A G GPATCH11 Silent p.E97E 0.18 TCGA-AZ-6598-01 2 38818685 38818685 A T HNRNPLL Missense_Mutation p.F94I 0.41 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 2 42282438 42282438 G - PKDCC Frame_Shift_Del p.V378Wfs*112 0.21 TCGA-AZ-6598-01 2 42995060 42995060 G T HAAO Silent p.A213A 0.37 TCGA-AZ-6598-01 2 43451493 43451493 G A ZFP36L2 Missense_Mutation p.P484S 0.42 deleterious(0) unknown(0) TCGA-AZ-6598-01 2 44101062 44101062 G A ABCG8 Missense_Mutation p.A450T 0.42 deleterious(0) probably_damaging(0.946) TCGA-AZ-6598-01 2 46739113 46739113 A - ATP6V1E2 3'UTR 0.13 TCGA-AZ-6598-01 2 46808262 46808262 C G RHOQ 3'UTR 0.08 TCGA-AZ-6598-01 2 48033784 48033784 T C MSH6 Missense_Mutation p.L1332S 0.32 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 2 48809580 48809580 T C STON1-GTF2A1L Missense_Mutation p.L603P 0.39 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 2 48925846 48925846 T - LHCGR Frame_Shift_Del p.K258Nfs*16 0.35 TCGA-AZ-6598-01 2 54081596 54081597 - G GPR75 Frame_Shift_Ins p.M100Hfs*13 0.26 TCGA-AZ-6598-01 2 55900197 55900197 C T PNPT1 Missense_Mutation p.A233T 0.38 deleterious(0) probably_damaging(0.958) TCGA-AZ-6598-01 2 55906912 55906912 A T PNPT1 Missense_Mutation p.I195K 0.45 deleterious(0.01) benign(0.094) TCGA-AZ-6598-01 2 60688998 60688998 C T BCL11A Missense_Mutation p.S350N 0.41 tolerated(0.3) possibly_damaging(0.525) TCGA-AZ-6598-01 2 62449456 62449456 A - B3GNT2 Frame_Shift_Del p.N36Mfs*6 0.32 TCGA-AZ-6598-01 2 64139681 64139681 A G VPS54 Missense_Mutation p.I846T 0.34 deleterious(0) possibly_damaging(0.855) TCGA-AZ-6598-01 2 65245299 65245299 G A SLC1A4 Missense_Mutation p.V377M 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 2 65316140 65316140 T C RAB1A Missense_Mutation p.N118S 0.23 tolerated(0.17) benign(0.043) TCGA-AZ-6598-01 2 65357074 65357074 A G RAB1A 5'UTR 0.32 TCGA-AZ-6598-01 2 66667034 66667034 C - MEIS1 Frame_Shift_Del p.R102Afs*20 0.29 TCGA-AZ-6598-01 2 68873260 68873260 A G PROKR1 Missense_Mutation p.N103D 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6598-01 2 69627551 69627551 T - NFU1 Frame_Shift_Del p.N222Mfs*14 0.29 TCGA-AZ-6598-01 2 70122252 70122252 C T SNRNP27 Missense_Mutation p.R21W 0.52 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6598-01 2 71205910 71205910 G T ANKRD53 Missense_Mutation p.K45N 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.481) TCGA-AZ-6598-01 2 71357862 71357862 G A MPHOSPH10 Missense_Mutation p.G23S 0.37 tolerated(0.66) benign(0.005) TCGA-AZ-6598-01 2 71577133 71577133 G A ZNF638 Missense_Mutation p.R350Q 0.38 tolerated(0.05) benign(0.104) TCGA-AZ-6598-01 2 71742805 71742805 C A DYSF Missense_Mutation p.P271H 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 2 72606954 72606954 C T EXOC6B Missense_Mutation p.A676T 0.29 deleterious(0.01) benign(0.055) TCGA-AZ-6598-01 2 73302565 73302565 C T RAB11FIP5 3'UTR 0.45 TCGA-AZ-6598-01 2 73302655 73302655 G - RAB11FIP5 Frame_Shift_Del p.K653Nfs*107 0.42 TCGA-AZ-6598-01 2 74592757 74592757 G A DCTN1 Missense_Mutation p.R972W 0.44 deleterious(0) probably_damaging(0.995) TCGA-AZ-6598-01 2 74653485 74653485 G - RTKN Frame_Shift_Del p.P526Qfs*129 0.38 TCGA-AZ-6598-01 2 74688672 74688672 G - MOGS Frame_Shift_Del p.Y749Tfs*44 0.43 TCGA-AZ-6598-01 2 74689212 74689212 G T MOGS Silent p.A568A 0.44 TCGA-AZ-6598-01 2 74725141 74725141 G A LBX2 Silent p.G166G 0.40 TCGA-AZ-6598-01 2 75874011 75874011 C - MRPL19 Frame_Shift_Del p.P28Rfs*49 0.42 TCGA-AZ-6598-01 2 80530704 80530704 G A LRRTM1 Missense_Mutation p.R81C 0.43 deleterious(0.02) possibly_damaging(0.451) TCGA-AZ-6598-01 2 84848466 84848466 G A DNAH6 Missense_Mutation p.G1315D 0.32 tolerated(0.48) benign(0.043) TCGA-AZ-6598-01 2 86669165 86669165 G A KDM3A 5'UTR 0.25 TCGA-AZ-6598-01 2 86992259 86992259 C T RMND5A Nonsense_Mutation p.R211* 0.39 TCGA-AZ-6598-01 2 8870916 8870916 C T KIDINS220 Silent p.P1750P 0.38 TCGA-AZ-6598-01 2 8926159 8926159 A G KIDINS220 Silent p.G647G 0.58 TCGA-AZ-6598-01 2 9098636 9098636 A - MBOAT2 Frame_Shift_Del p.C71Afs*20 0.31 TCGA-AZ-6598-01 2 9098716 9098716 G A MBOAT2 Missense_Mutation p.T44I 0.39 tolerated(0.75) benign(0.003) TCGA-AZ-6598-01 2 9543423 9543423 C - ASAP2 Frame_Shift_Del p.P997Rfs*55 0.27 TCGA-AZ-6598-01 2 9572811 9572811 C T CPSF3 Silent p.G171G 0.38 TCGA-AZ-6598-01 2 95945746 95945746 G A PROM2 Splice_Site p.X476_splice 0.35 TCGA-AZ-6598-01 2 9633025 9633025 A G ADAM17 Splice_Site p.X694_splice 0.41 TCGA-AZ-6598-01 2 97519170 97519170 C T ANKRD39 Missense_Mutation p.V126M 0.42 tolerated(0.12) possibly_damaging(0.748) TCGA-AZ-6598-01 2 97532154 97532154 C T SEMA4C Missense_Mutation p.V42I 0.48 tolerated(0.16) benign(0.063) TCGA-AZ-6598-01 2 98263811 98263811 C A COX5B Missense_Mutation p.P61Q 0.13 deleterious(0.02) benign(0.378) TCGA-AZ-6598-01 2 98275016 98275016 A G ACTR1B Silent p.P177P 0.16 TCGA-AZ-6598-01 3 100016845 100016845 G A TBC1D23 Missense_Mutation p.A319T 0.40 deleterious(0.01) benign(0.074) TCGA-AZ-6598-01 3 10050085 10050085 T G AC022007.5 Intron 0.34 TCGA-AZ-6598-01 3 100565257 100565257 G T ABI3BP Missense_Mutation p.P519H 0.35 deleterious(0.01) possibly_damaging(0.893) TCGA-AZ-6598-01 3 100947658 100947658 A - IMPG2 Frame_Shift_Del p.F1232Lfs*2 0.25 TCGA-AZ-6598-01 3 101481360 101481360 A - CEP97 Frame_Shift_Del p.K618Nfs*15 0.31 TCGA-AZ-6598-01 3 10183572 10183572 G A VHL Missense_Mutation p.G14D 0.43 tolerated_low_confidence(0.19) probably_damaging(0.931) TCGA-AZ-6598-01 3 10370439 10370439 C T ATP2B2 3'UTR 0.43 TCGA-AZ-6598-01 3 105271365 105271366 - T ALCAM Frame_Shift_Ins p.G535Wfs*33 0.23 TCGA-AZ-6598-01 3 109033404 109033404 T A DPPA2 Splice_Site 0.37 TCGA-AZ-6598-01 3 109050880 109050880 T C DPPA4 Splice_Site p.X60_splice 0.36 TCGA-AZ-6598-01 3 109213184 109213184 T C RP11-702L6.4 RNA 0.46 TCGA-AZ-6598-01 3 111775894 111775894 T C TMPRSS7 Missense_Mutation p.I283T 0.41 deleterious(0) benign(0.182) TCGA-AZ-6598-01 3 112666768 112666768 G A CD200R1 Missense_Mutation p.A24V 0.47 tolerated(0.32) benign(0.192) TCGA-AZ-6598-01 3 112732864 112732864 T G C3orf17 Missense_Mutation p.K93Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 3 112992116 112992116 G A BOC Missense_Mutation p.V388I 0.33 tolerated(0.41) benign(0.009) TCGA-AZ-6598-01 3 113002371 113002371 C T BOC Missense_Mutation p.R849C 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 113377964 113377964 C T KIAA2018 Silent p.Q855Q 0.40 TCGA-AZ-6598-01 3 113775224 113775224 C A KIAA1407 Missense_Mutation p.K30N 0.26 deleterious(0.02) benign(0.029) TCGA-AZ-6598-01 3 114069920 114069920 G A ZBTB20 Silent p.D335D 0.36 TCGA-AZ-6598-01 3 119101167 119101167 G A ARHGAP31 Missense_Mutation p.A154T 0.44 tolerated(0.55) probably_damaging(1) TCGA-AZ-6598-01 3 119305271 119305271 C T ADPRH Silent p.S146S 0.37 TCGA-AZ-6598-01 3 121037366 121037366 C T STXBP5L Missense_Mutation p.R743C 0.06 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 3 121155115 121155115 C T POLQ Missense_Mutation p.R2466H 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 121217468 121217468 A - POLQ Frame_Shift_Del p.F670Sfs*11 0.25 TCGA-AZ-6598-01 3 121340733 121340733 G A FBXO40 Missense_Mutation p.A153T 0.45 tolerated(0.56) benign(0.016) TCGA-AZ-6598-01 3 121415490 121415490 G A GOLGB1 Missense_Mutation p.P1294S 0.45 benign(0.021) TCGA-AZ-6598-01 3 121659906 121659906 T - SLC15A2 3'UTR 0.26 TCGA-AZ-6598-01 3 122447336 122447336 T C PARP14 Silent p.P1766P 0.41 TCGA-AZ-6598-01 3 122496600 122496600 C T HSPBAP1 Missense_Mutation p.R73Q 0.42 tolerated(0.33) benign(0.168) TCGA-AZ-6598-01 3 122631702 122631702 G - SEMA5B Frame_Shift_Del p.Q959Rfs*147 0.41 TCGA-AZ-6598-01 3 122632816 122632816 G A SEMA5B Missense_Mutation p.A728V 0.38 deleterious(0.01) probably_damaging(0.942) TCGA-AZ-6598-01 3 122645441 122645441 G A SEMA5B Missense_Mutation p.R366C 0.51 deleterious(0) probably_damaging(0.921) TCGA-AZ-6598-01 3 122864435 122864435 C T PDIA5 Missense_Mutation p.A326V 0.26 tolerated(0.18) benign(0.009) TCGA-AZ-6598-01 3 122869089 122869089 C - PDIA5 Frame_Shift_Del p.P386Rfs*26 0.27 TCGA-AZ-6598-01 3 123046576 123046577 - T ADCY5 Frame_Shift_Ins p.N612Kfs*66 0.31 TCGA-AZ-6598-01 3 124732435 124732437 GAG - HEG1 In_Frame_Del p.S672del 0.09 TCGA-AZ-6598-01 3 125216989 125216989 G A SNX4 Missense_Mutation p.R105W 0.45 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 126194024 126194024 G T ZXDC Missense_Mutation p.L229M 0.39 tolerated(0.1) probably_damaging(0.987) TCGA-AZ-6598-01 3 126236478 126236478 C T UROC1 Missense_Mutation p.A29T 0.39 deleterious(0.01) probably_damaging(0.977) TCGA-AZ-6598-01 3 126272180 126272180 C T C3orf22 Silent p.Q18Q 0.47 TCGA-AZ-6598-01 3 126386156 126386156 C T NUP210P1 RNA 0.33 TCGA-AZ-6598-01 3 126708293 126708293 G A PLXNA1 Missense_Mutation p.C286Y 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 126733645 126733645 G A PLXNA1 Missense_Mutation p.A950T 0.38 tolerated(0.48) benign(0.236) TCGA-AZ-6598-01 3 127775620 127775620 G A SEC61A1 Missense_Mutation p.A97T 0.43 tolerated(0.39) benign(0.011) TCGA-AZ-6598-01 3 128350961 128350961 G T RPN1 Missense_Mutation p.L225M 0.45 tolerated(0.05) probably_damaging(0.951) TCGA-AZ-6598-01 3 12859204 12859204 G A CAND2 Missense_Mutation p.A925T 0.10 tolerated(0.3) benign(0.007) TCGA-AZ-6598-01 3 128810034 128810034 T C RAB43 Missense_Mutation p.M182V 0.31 tolerated(0.39) benign(0) TCGA-AZ-6598-01 3 128976571 128976571 C T COPG1 Missense_Mutation p.R247C 0.43 tolerated(0.05) benign(0.008) TCGA-AZ-6598-01 3 129034609 129034609 C T H1FX Missense_Mutation p.G46D 0.48 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 129207187 129207187 C T IFT122 Missense_Mutation p.R698C 0.40 deleterious(0.02) possibly_damaging(0.761) TCGA-AZ-6598-01 3 129694870 129694870 G A TRH Missense_Mutation p.A71T 0.25 tolerated(0.18) benign(0.138) TCGA-AZ-6598-01 3 12977738 12977738 C T IQSEC1 Missense_Mutation p.A274T 0.41 tolerated(0.56) benign(0.027) TCGA-AZ-6598-01 3 130187871 130187872 CT - COL6A5 Frame_Shift_Del p.P2343Sfs*6 0.14 TCGA-AZ-6598-01 3 130311440 130311440 G A COL6A6 Missense_Mutation p.G1443D 0.49 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 130447405 130447405 C T PIK3R4 Missense_Mutation p.R570H 0.40 tolerated(0.05) benign(0.067) TCGA-AZ-6598-01 3 130743643 130743643 T - ASTE1 Frame_Shift_Del p.T170Lfs*6 0.32 TCGA-AZ-6598-01 3 133185680 133185680 G A BFSP2 Silent p.A300A 0.41 TCGA-AZ-6598-01 3 133193943 133193944 - A BFSP2 3'UTR 0.32 TCGA-AZ-6598-01 3 133368390 133368390 G A TOPBP1 Silent p.Y447Y 0.46 TCGA-AZ-6598-01 3 13363204 13363204 C - NUP210 Frame_Shift_Del p.A1683Pfs*18 0.14 TCGA-AZ-6598-01 3 134348501 134348501 G A KY Missense_Mutation p.A100V 0.42 deleterious_low_confidence(0.02) benign(0.068) TCGA-AZ-6598-01 3 135721647 135721647 G A PPP2R3A Missense_Mutation p.G436E 0.39 tolerated_low_confidence(0.19) probably_damaging(0.999) TCGA-AZ-6598-01 3 136057264 136057264 G A STAG1 Missense_Mutation p.A1234V 0.46 deleterious_low_confidence(0.01) benign(0.146) TCGA-AZ-6598-01 3 136287655 136287655 C T STAG1 Missense_Mutation p.A116T 0.40 deleterious(0.01) benign(0.271) TCGA-AZ-6598-01 3 1363375 1363375 C T CNTN6 Missense_Mutation p.P268L 0.40 deleterious(0.04) benign(0.037) TCGA-AZ-6598-01 3 137781638 137781638 C T DZIP1L 3'UTR 0.34 TCGA-AZ-6598-01 3 137786447 137786447 C T DZIP1L Missense_Mutation p.R643Q 0.36 tolerated(0.92) benign(0.001) TCGA-AZ-6598-01 3 138153696 138153696 G A ESYT3 Missense_Mutation p.R19H 0.32 tolerated(0.11) benign(0.197) TCGA-AZ-6598-01 3 138219397 138219397 G A CEP70 Missense_Mutation p.P461S 0.42 deleterious(0.03) benign(0.053) TCGA-AZ-6598-01 3 138341122 138341122 C T FAIM Silent p.D102D 0.32 TCGA-AZ-6598-01 3 13896285 13896285 G T WNT7A Missense_Mutation p.A105E 0.38 deleterious(0) probably_damaging(0.99) TCGA-AZ-6598-01 3 139098272 139098272 C T COPB2 Missense_Mutation p.V60I 0.35 tolerated(0.06) possibly_damaging(0.589) TCGA-AZ-6598-01 3 139171954 139171954 G A RBP2 3'UTR 0.55 TCGA-AZ-6598-01 3 141497492 141497492 G A GRK7 Silent p.P122P 0.40 TCGA-AZ-6598-01 3 142054304 142054304 T - XRN1 Frame_Shift_Del p.M1309Cfs*14 0.28 TCGA-AZ-6598-01 3 1427377 1427377 C T CNTN6 Missense_Mutation p.T867M 0.08 deleterious(0.04) possibly_damaging(0.73) TCGA-AZ-6598-01 3 142775361 142775362 - A U2SURP 3'UTR 0.47 TCGA-AZ-6598-01 3 14523235 14523235 C T SLC6A6 Silent p.Y536Y 0.42 TCGA-AZ-6598-01 3 148459417 148459417 A - AGTR1 Frame_Shift_Del p.N200Ifs*10 0.33 TCGA-AZ-6598-01 3 148789069 148789069 A G HLTF Silent p.H288H 0.29 TCGA-AZ-6598-01 3 150127971 150127971 G A TSC22D2 Silent p.P278P 0.31 TCGA-AZ-6598-01 3 151046142 151046142 T - P2RY13 Frame_Shift_Del p.V235Yfs*81 0.30 TCGA-AZ-6598-01 3 151105888 151105888 A - MED12L Frame_Shift_Del p.T1760Pfs*44 0.35 TCGA-AZ-6598-01 3 15259989 15259989 A C CAPN7 Missense_Mutation p.T127P 0.40 deleterious(0.04) benign(0.033) TCGA-AZ-6598-01 3 152885647 152885647 A G RAP2B 3'UTR 0.38 TCGA-AZ-6598-01 3 155393927 155393927 A - PLCH1 5'Flank 0.27 TCGA-AZ-6598-01 3 15609973 15609973 G A HACL1 Missense_Mutation p.R406W 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 156866365 156866365 G A CCNL1 Missense_Mutation p.R416W 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-AZ-6598-01 3 15686684 15686684 G A BTD Missense_Mutation p.G441R 0.35 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 3 15776944 15776944 G A ANKRD28 Missense_Mutation p.R175C 0.38 deleterious(0.04) probably_damaging(0.995) TCGA-AZ-6598-01 3 160102353 160102353 C T IFT80 Silent p.K12K 0.33 TCGA-AZ-6598-01 3 160219829 160219829 C T KPNA4 3'UTR 0.56 TCGA-AZ-6598-01 3 16475451 16475451 G A RFTN1 Missense_Mutation p.A80V 0.43 tolerated(0.4) benign(0.058) TCGA-AZ-6598-01 3 169381319 169381319 C T MECOM 5'Flank 0.43 TCGA-AZ-6598-01 3 17053469 17053469 C T PLCL2 Silent p.H751H 0.39 TCGA-AZ-6598-01 3 178962387 178962387 C T KCNMB3 Missense_Mutation p.G119S 0.26 tolerated(0.17) possibly_damaging(0.595) TCGA-AZ-6598-01 3 179334770 179334770 G T NDUFB5 Splice_Site p.X94_splice 0.26 TCGA-AZ-6598-01 3 180326470 180326470 G A TTC14 Intron 0.36 TCGA-AZ-6598-01 3 182990930 182990930 A - B3GNT5 3'UTR 0.32 TCGA-AZ-6598-01 3 183888381 183888381 C - DVL3 Frame_Shift_Del p.M666Cfs*2 0.42 TCGA-AZ-6598-01 3 183952080 183952080 C A VWA5B2 Silent p.R239R 0.37 TCGA-AZ-6598-01 3 184102928 184102928 C A CHRD Missense_Mutation p.L574I 0.46 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 3 184298803 184298803 T C EPHB3 Missense_Mutation p.M861T 0.35 deleterious(0.03) probably_damaging(0.924) TCGA-AZ-6598-01 3 184910086 184910086 T - EHHADH Frame_Shift_Del p.K700Nfs*10 0.35 TCGA-AZ-6598-01 3 185226451 185226451 G A LIPH 3'UTR 0.58 TCGA-AZ-6598-01 3 185783793 185783793 C T ETV5 Missense_Mutation p.R240H 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-AZ-6598-01 3 186256501 186256501 C T CRYGS Missense_Mutation p.R174H 0.39 deleterious(0.03) benign(0.226) TCGA-AZ-6598-01 3 194408142 194408142 T C FAM43A Missense_Mutation p.L196P 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 3 194408876 194408876 C G FAM43A 3'UTR 0.53 TCGA-AZ-6598-01 3 19479714 19479714 G - KCNH8 Frame_Shift_Del p.G414Afs*16 0.37 TCGA-AZ-6598-01 3 195400753 195400753 C T SDHAP2 RNA 0.38 TCGA-AZ-6598-01 3 195487854 195487854 T C MUC4 Missense_Mutation p.S4917G 0.06 possibly_damaging(0.483) TCGA-AZ-6598-01 3 195487898 195487898 T - MUC4 Frame_Shift_Del p.N4902Tfs*8 0.37 TCGA-AZ-6598-01 3 195605200 195605200 G A TNK2 Missense_Mutation p.R457W 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-AZ-6598-01 3 195960019 195960019 T C SLC51A Silent p.V324V 0.48 TCGA-AZ-6598-01 3 196388211 196388211 G A NRROS Missense_Mutation p.R566H 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-AZ-6598-01 3 196454940 196454940 G A PIGX Silent p.P155P 0.36 TCGA-AZ-6598-01 3 196663898 196663898 A G NCBP2 Missense_Mutation p.L152P 0.38 tolerated(0.14) benign(0.062) TCGA-AZ-6598-01 3 196744061 196744061 G A MFI2 Silent p.C271C 0.42 TCGA-AZ-6598-01 3 197349135 197349135 C T AC024560.3 RNA 0.32 TCGA-AZ-6598-01 3 197483380 197483380 G A FYTTD1 Missense_Mutation p.A63T 0.41 tolerated(0.63) benign(0.036) TCGA-AZ-6598-01 3 197748374 197748374 G A LMLN Missense_Mutation p.V512M 0.45 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 3 197765704 197765704 C A LMLN 3'UTR 0.45 TCGA-AZ-6598-01 3 20017627 20017627 C T RAB5A Missense_Mutation p.A135V 0.33 tolerated(0.17) possibly_damaging(0.514) TCGA-AZ-6598-01 3 24231684 24231684 G A THRB Missense_Mutation p.S55L 0.13 tolerated_low_confidence(0.75) benign(0) TCGA-AZ-6598-01 3 25760817 25760817 G A NGLY1 3'UTR 0.14 TCGA-AZ-6598-01 3 27759192 27759192 G A EOMES Missense_Mutation p.P477L 0.47 tolerated(0.1) benign(0.318) TCGA-AZ-6598-01 3 27761703 27761703 C - EOMES Frame_Shift_Del p.G332Afs*4 0.36 TCGA-AZ-6598-01 3 31703606 31703606 G A OSBPL10 Silent p.G751G 0.30 TCGA-AZ-6598-01 3 33255459 33255459 G A SUSD5 Missense_Mutation p.A84V 0.44 deleterious(0.01) possibly_damaging(0.821) TCGA-AZ-6598-01 3 33592747 33592747 C T CLASP2 Silent p.R1058R 0.37 TCGA-AZ-6598-01 3 33648169 33648169 A G CLASP2 Silent p.S537S 0.10 TCGA-AZ-6598-01 3 33661149 33661150 - T CLASP2 Frame_Shift_Ins p.N422Kfs*2 0.13 TCGA-AZ-6598-01 3 35780878 35780878 C - ARPP21 Frame_Shift_Del p.P574Hfs*21 0.29 TCGA-AZ-6598-01 3 36897378 36897378 C T TRANK1 Missense_Mutation p.A1235T 0.43 tolerated(1) benign(0.001) TCGA-AZ-6598-01 3 38523754 38523754 C A ACVR2B Silent p.A380A 0.43 TCGA-AZ-6598-01 3 39185138 39185138 C T CSRNP1 Missense_Mutation p.R393H 0.40 deleterious(0.01) possibly_damaging(0.769) TCGA-AZ-6598-01 3 40231754 40231754 C T MYRIP Missense_Mutation p.R489C 0.39 tolerated(0.15) possibly_damaging(0.81) TCGA-AZ-6598-01 3 40285974 40285974 C T MYRIP Missense_Mutation p.T713I 0.09 deleterious(0) benign(0.072) TCGA-AZ-6598-01 3 42265310 42265310 T C TRAK1 3'UTR 0.30 TCGA-AZ-6598-01 3 42569497 42569497 C T VIPR1 Missense_Mutation p.T173M 0.36 deleterious(0) probably_damaging(0.922) TCGA-AZ-6598-01 3 42727555 42727555 G A KLHL40 Missense_Mutation p.A149T 0.45 deleterious(0.04) possibly_damaging(0.547) TCGA-AZ-6598-01 3 43121103 43121103 C A POMGNT2 3'UTR 0.38 TCGA-AZ-6598-01 3 43640071 43640072 - T ANO10 Frame_Shift_Ins p.M142Nfs*34 0.31 TCGA-AZ-6598-01 3 44636789 44636790 - C ZNF660 3'UTR 0.19 TCGA-AZ-6598-01 3 45048962 45048962 G A EXOSC7 Silent p.S222S 0.41 TCGA-AZ-6598-01 3 45718619 45718619 C T LIMD1 3'UTR 0.32 TCGA-AZ-6598-01 3 45942448 45942448 G A CCR9 Nonsense_Mutation p.W56* 0.40 TCGA-AZ-6598-01 3 45942505 45942505 C T CCR9 Silent p.Y75Y 0.29 TCGA-AZ-6598-01 3 45963190 45963190 C T FYCO1 3'UTR 0.29 TCGA-AZ-6598-01 3 46009077 46009077 C A FYCO1 Missense_Mutation p.E583D 0.36 deleterious(0.05) benign(0.001) TCGA-AZ-6598-01 3 46713649 46713649 C T ALS2CL Missense_Mutation p.E839K 0.50 deleterious(0) probably_damaging(0.937) TCGA-AZ-6598-01 3 47084151 47084151 G A SETD2 Missense_Mutation p.P2380S 0.23 deleterious(0.01) benign(0.06) TCGA-AZ-6598-01 3 47890237 47890237 T C DHX30 Missense_Mutation p.L900P 0.40 deleterious(0) probably_damaging(0.992) TCGA-AZ-6598-01 3 47890759 47890759 G A DHX30 Missense_Mutation p.A1003T 0.09 tolerated(0.22) benign(0.051) TCGA-AZ-6598-01 3 4808310 4808310 G A ITPR1 Missense_Mutation p.A1866T 0.42 deleterious(0.01) possibly_damaging(0.899) TCGA-AZ-6598-01 3 48265909 48265909 G A CAMP Silent p.T92T 0.40 TCGA-AZ-6598-01 3 48612871 48612871 G - COL7A1 Frame_Shift_Del p.P2029Lfs*177 0.42 TCGA-AZ-6598-01 3 48621170 48621170 G - COL7A1 Frame_Shift_Del p.P1441Lfs*269 0.27 TCGA-AZ-6598-01 3 48621801 48621801 G - COL7A1 Frame_Shift_Del p.P1376Lfs*23 0.17 TCGA-AZ-6598-01 3 49154737 49154737 G A USP19 Nonsense_Mutation p.Q222* 0.41 TCGA-AZ-6598-01 3 49161235 49161235 C A LAMB2 Silent p.V1241V 0.43 TCGA-AZ-6598-01 3 49700309 49700309 C T BSN Missense_Mutation p.A3573V 0.33 unknown(0) TCGA-AZ-6598-01 3 49737107 49737107 C T RNF123 Missense_Mutation p.R296W 0.31 deleterious(0.01) possibly_damaging(0.634) TCGA-AZ-6598-01 3 49738974 49738974 G A RNF123 Missense_Mutation p.R443H 0.49 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AZ-6598-01 3 49756159 49756159 C T AMIGO3 Missense_Mutation p.R247H 0.43 tolerated(0.13) benign(0.003) TCGA-AZ-6598-01 3 49764673 49764673 C T IP6K1 Missense_Mutation p.S403N 0.40 deleterious(0) probably_damaging(0.982) TCGA-AZ-6598-01 3 49842794 49842794 A G UBA7 Missense_Mutation p.C996R 0.45 deleterious(0) probably_damaging(0.961) TCGA-AZ-6598-01 3 50006170 50006170 C T RBM6 Missense_Mutation p.R438W 0.37 deleterious(0.01) benign(0) TCGA-AZ-6598-01 3 50312356 50312356 C T LSMEM2 5'Flank 0.13 TCGA-AZ-6598-01 3 50313210 50313210 C - LSMEM2 5'Flank 0.38 TCGA-AZ-6598-01 3 50340254 50340254 T C HYAL1 Missense_Mutation p.E45G 0.46 tolerated(0.24) benign(0.228) TCGA-AZ-6598-01 3 50685534 50685534 C A MAPKAPK3 3'UTR 0.48 TCGA-AZ-6598-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.73 TCGA-AZ-6598-01 3 51431352 51431353 - G RBM15B Frame_Shift_Ins p.S844Vfs*121 0.29 TCGA-AZ-6598-01 3 51989524 51989524 G A GPR62 5'UTR 0.42 TCGA-AZ-6598-01 3 5212214 5212214 A G ARL8B Missense_Mutation p.I50M 0.09 deleterious(0) probably_damaging(0.936) TCGA-AZ-6598-01 3 52181041 52181041 T A POC1A Missense_Mutation p.S176C 0.31 deleterious(0) probably_damaging(0.95) TCGA-AZ-6598-01 3 52485416 52485416 C T TNNC1 Missense_Mutation p.D149N 0.42 tolerated(1) probably_damaging(0.996) TCGA-AZ-6598-01 3 52514403 52514403 C A NISCH Intron 0.38 TCGA-AZ-6598-01 3 52550714 52550714 G A STAB1 Silent p.V1431V 0.42 TCGA-AZ-6598-01 3 52838002 52838002 C T ITIH3 Missense_Mutation p.A614V 0.22 tolerated(0.31) benign(0.006) TCGA-AZ-6598-01 3 53844183 53844183 C T CACNA1D Missense_Mutation p.P2037L 0.45 deleterious_low_confidence(0) benign(0.182) TCGA-AZ-6598-01 3 54604013 54604013 T C CACNA2D3 Missense_Mutation p.V257A 0.42 deleterious(0) probably_damaging(0.975) TCGA-AZ-6598-01 3 55508369 55508369 C T WNT5A Missense_Mutation p.R227H 0.33 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 3 56667960 56667961 CA - FAM208A Frame_Shift_Del p.V953Afs*8 0.26 TCGA-AZ-6598-01 3 58510265 58510266 GA - ACOX2 Frame_Shift_Del p.P472Ifs*9 0.44 TCGA-AZ-6598-01 3 58552905 58552905 C T FAM107A Intron 0.10 TCGA-AZ-6598-01 3 58629413 58629413 C A FAM3D Missense_Mutation p.G100C 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 62357265 62357265 G A FEZF2 Silent p.C310C 0.36 TCGA-AZ-6598-01 3 64132635 64132640 CTTCCT - PRICKLE2 In_Frame_Del p.E509_E510del 0.29 TCGA-AZ-6598-01 3 64672309 64672309 A G ADAMTS9 Missense_Mutation p.F151L 0.49 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 3 64673366 64673366 C - ADAMTS9 5'UTR 0.37 TCGA-AZ-6598-01 3 66434487 66434487 C T LRIG1 Missense_Mutation p.A667T 0.20 tolerated(0.1) benign(0.04) TCGA-AZ-6598-01 3 69168349 69168349 A G LMOD3 Missense_Mutation p.V386A 0.07 tolerated(0.15) probably_damaging(0.997) TCGA-AZ-6598-01 3 71247446 71247446 G A FOXP1 Silent p.C29C 0.33 TCGA-AZ-6598-01 3 71748775 71748775 G A EIF4E3 Nonsense_Mutation p.R112* 0.27 TCGA-AZ-6598-01 3 73433107 73433107 G - PDZRN3 Frame_Shift_Del p.H870Qfs*17 0.35 TCGA-AZ-6598-01 3 73433168 73433168 G A PDZRN3 Missense_Mutation p.T850M 0.55 tolerated(0.1) benign(0.047) TCGA-AZ-6598-01 3 81643080 81643080 G A GBE1 Missense_Mutation p.L363F 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-AZ-6598-01 3 8675370 8675371 - T SSUH2 Frame_Shift_Ins p.R108Afs*13 0.25 TCGA-AZ-6598-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.33 TCGA-AZ-6598-01 3 88041033 88041033 T - HTR1F 3'UTR 0.33 TCGA-AZ-6598-01 3 88205866 88205866 A - C3orf38 3'UTR 0.38 TCGA-AZ-6598-01 3 93845078 93845078 C T NSUN3 Missense_Mutation p.P256L 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 3 97596524 97596524 T A CRYBG3 Missense_Mutation p.D214E 0.40 tolerated(0.66) benign(0.021) TCGA-AZ-6598-01 3 97744488 97744488 G A GABRR3 RNA 0.44 TCGA-AZ-6598-01 3 97852456 97852456 A - OR5H1 Frame_Shift_Del p.K307Nfs*? 0.28 TCGA-AZ-6598-01 3 9793551 9793551 G A OGG1 Silent p.R161R 0.07 TCGA-AZ-6598-01 3 9807629 9807629 G A OGG1 Missense_Mutation p.S362N 0.42 deleterious_low_confidence(0.02) benign(0.213) TCGA-AZ-6598-01 3 9847982 9847982 C T ARPC4 3'UTR 0.10 TCGA-AZ-6598-01 3 98506942 98506942 T - ST3GAL6 Frame_Shift_Del p.Y167Ifs*18 0.31 TCGA-AZ-6598-01 3 99567939 99567939 G A FILIP1L Silent p.L861L 0.42 TCGA-AZ-6598-01 3 99567940 99567940 C T FILIP1L Silent p.K860K 0.42 TCGA-AZ-6598-01 4 10076945 10076945 G A WDR1 3'UTR 0.43 TCGA-AZ-6598-01 4 10099422 10099422 G A WDR1 Silent p.S157S 0.11 TCGA-AZ-6598-01 4 102951240 102951240 A C BANK1 Missense_Mutation p.E573A 0.36 tolerated(0.1) benign(0.003) TCGA-AZ-6598-01 4 103808509 103808509 C T CISD2 Silent p.C110C 0.31 TCGA-AZ-6598-01 4 10446981 10446981 C T ZNF518B Silent p.Q324Q 0.42 TCGA-AZ-6598-01 4 10586568 10586568 C T CLNK Missense_Mutation p.R32H 0.33 tolerated(0.51) benign(0) TCGA-AZ-6598-01 4 106158632 106158632 A - TET2 Intron 0.26 TCGA-AZ-6598-01 4 106861795 106861795 T A NPNT Splice_Site p.X285_splice 0.38 TCGA-AZ-6598-01 4 106890068 106890068 A - NPNT Frame_Shift_Del p.R572Gfs*10 0.33 TCGA-AZ-6598-01 4 109681054 109681054 A G ETNPPL Silent p.C62C 0.37 TCGA-AZ-6598-01 4 110223140 110223140 G C COL25A1 Silent p.G12G 0.28 TCGA-AZ-6598-01 4 111398029 111398029 C T ENPEP Silent p.D153D 0.27 TCGA-AZ-6598-01 4 113502819 113502819 T G C4orf21 Missense_Mutation p.N1480H 0.42 deleterious(0.01) possibly_damaging(0.632) TCGA-AZ-6598-01 4 115544637 115544637 C A UGT8 Missense_Mutation p.L201I 0.36 tolerated(0.34) benign(0.301) TCGA-AZ-6598-01 4 115767131 115767131 G A NDST4 Missense_Mutation p.P655S 0.49 deleterious(0.04) probably_damaging(0.995) TCGA-AZ-6598-01 4 118006156 118006156 A - TRAM1L1 Frame_Shift_Del p.S132Lfs*9 0.28 TCGA-AZ-6598-01 4 121698355 121698355 G A PRDM5 Missense_Mutation p.R509W 0.34 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 4 122682815 122682815 A G TMEM155 Silent p.G30G 0.11 TCGA-AZ-6598-01 4 122872779 122872779 C T TRPC3 Silent p.P19P 0.65 TCGA-AZ-6598-01 4 123111217 123111217 A T KIAA1109 Missense_Mutation p.Y295F 0.25 probably_damaging(0.986) TCGA-AZ-6598-01 4 123270706 123270706 A G KIAA1109 Missense_Mutation p.M4514V 0.37 probably_damaging(0.992) TCGA-AZ-6598-01 4 125631353 125631353 C T ANKRD50 Missense_Mutation p.R105H 0.37 tolerated(0.09) benign(0.006) TCGA-AZ-6598-01 4 126238021 126238021 G A FAT4 Missense_Mutation p.R152H 0.39 probably_damaging(0.993) TCGA-AZ-6598-01 4 126238102 126238102 G A FAT4 Missense_Mutation p.G179D 0.29 probably_damaging(1) TCGA-AZ-6598-01 4 126355535 126355535 T C FAT4 Missense_Mutation p.L2385S 0.15 probably_damaging(0.978) TCGA-AZ-6598-01 4 126372786 126372786 C A FAT4 Missense_Mutation p.P3539T 0.44 probably_damaging(1) TCGA-AZ-6598-01 4 129776873 129776873 C T JADE1 Missense_Mutation p.P262L 0.43 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 4 1309225 1309226 TG - MAEA Frame_Shift_Del p.C99Qfs*11 0.33 TCGA-AZ-6598-01 4 13339532 13339532 G T HSP90AB2P RNA 0.38 TCGA-AZ-6598-01 4 134071968 134071968 C - PCDH10 Frame_Shift_Del p.Q227Sfs*43 0.42 TCGA-AZ-6598-01 4 13485808 13485808 G - RAB28 5'UTR 0.39 TCGA-AZ-6598-01 4 13543767 13543767 C T NKX3-2 Silent p.V284V 0.50 TCGA-AZ-6598-01 4 138442737 138442737 C - PCDH18 Frame_Shift_Del p.E952Kfs*57 0.32 TCGA-AZ-6598-01 4 1388691 1388691 C T CRIPAK Missense_Mutation p.A131V 0.29 tolerated(0.47) possibly_damaging(0.682) TCGA-AZ-6598-01 4 141590860 141590860 G A TBC1D9 Silent p.S455S 0.44 TCGA-AZ-6598-01 4 141677169 141677169 C T TBC1D9 Missense_Mutation p.A11T 0.46 tolerated(0.12) probably_damaging(0.989) TCGA-AZ-6598-01 4 141789415 141789415 T G RNF150 Nonstop_Mutation p.*439Cext*92 0.40 TCGA-AZ-6598-01 4 144480745 144480745 C T SMARCA5 3'Flank 0.67 TCGA-AZ-6598-01 4 145636478 145636478 C A HHIP Missense_Mutation p.P525H 0.11 tolerated(0.12) benign(0.007) TCGA-AZ-6598-01 4 148463812 148463812 G A EDNRA 3'UTR 0.27 TCGA-AZ-6598-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.27 TCGA-AZ-6598-01 4 151738399 151738399 C T LRBA Missense_Mutation p.V1728I 0.50 tolerated(0.16) benign(0.001) TCGA-AZ-6598-01 4 153549638 153549638 C T TMEM154 3'UTR 0.44 TCGA-AZ-6598-01 4 154249753 154249753 T A TRIM2 Silent p.A698A 0.36 TCGA-AZ-6598-01 4 155457775 155457775 G A PLRG1 3'UTR 0.54 TCGA-AZ-6598-01 4 155457813 155457813 G - PLRG1 3'UTR 0.17 TCGA-AZ-6598-01 4 155719193 155719193 C T RBM46 Missense_Mutation p.P128S 0.43 tolerated(0.13) possibly_damaging(0.456) TCGA-AZ-6598-01 4 156136613 156136613 A T NPY2R 3'UTR 0.31 TCGA-AZ-6598-01 4 156273869 156273869 T - MAP9 Frame_Shift_Del p.K567Rfs*13 0.31 TCGA-AZ-6598-01 4 158041755 158041755 G A GLRB Missense_Mutation p.S57N 0.39 deleterious(0) probably_damaging(0.948) TCGA-AZ-6598-01 4 15985958 15985958 C T PROM1 Silent p.S767S 0.48 TCGA-AZ-6598-01 4 164050137 164050137 T C NAF1 Missense_Mutation p.Y466C 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.887) TCGA-AZ-6598-01 4 16504719 16504719 G A LDB2 Intron 0.22 TCGA-AZ-6598-01 4 166243254 166243254 C T KLHL2 3'UTR 0.39 TCGA-AZ-6598-01 4 167810331 167810331 C T SPOCK3 Missense_Mutation p.C183Y 0.40 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 4 169141829 169141829 A - DDX60 Frame_Shift_Del p.F1672Lfs*25 0.08 TCGA-AZ-6598-01 4 1730384 1730384 G A TACC3 Missense_Mutation p.G419R 0.48 tolerated(0.06) benign(0.013) TCGA-AZ-6598-01 4 173852325 173852325 G T GALNTL6 Missense_Mutation p.G352V 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 4 17528582 17528582 C T CLRN2 Silent p.C192C 0.39 TCGA-AZ-6598-01 4 175898770 175898771 - A ADAM29 Frame_Shift_Ins p.S701Kfs*2 0.35 TCGA-AZ-6598-01 4 175898987 175898987 C T ADAM29 Missense_Mutation p.R771W 0.37 deleterious_low_confidence(0.03) unknown(0) TCGA-AZ-6598-01 4 183609359 183609359 G - TENM3 Frame_Shift_Del p.T695Rfs*81 0.33 TCGA-AZ-6598-01 4 183652232 183652232 A G TENM3 Silent p.S969S 0.42 TCGA-AZ-6598-01 4 186295505 186295505 T - LRP2BP Frame_Shift_Del p.G148Vfs*26 0.26 TCGA-AZ-6598-01 4 186423406 186423406 C T PDLIM3 3'UTR 0.25 TCGA-AZ-6598-01 4 187517779 187517779 C T FAT1 Silent p.A4305A 0.45 TCGA-AZ-6598-01 4 187518216 187518216 G A FAT1 Missense_Mutation p.R4160C 0.49 possibly_damaging(0.766) TCGA-AZ-6598-01 4 187540161 187540161 C T FAT1 Missense_Mutation p.V2527I 0.41 benign(0.004) TCGA-AZ-6598-01 4 187557891 187557891 C T FAT1 Missense_Mutation p.V1274I 0.08 possibly_damaging(0.604) TCGA-AZ-6598-01 4 187629826 187629826 C A FAT1 Missense_Mutation p.V386L 0.45 benign(0.027) TCGA-AZ-6598-01 4 1955146 1955146 A - WHSC1 Frame_Shift_Del p.K746Nfs*4 0.26 TCGA-AZ-6598-01 4 1987896 1987897 AG - NELFA Frame_Shift_Del p.S271* 0.30 TCGA-AZ-6598-01 4 20550181 20550181 T C SLIT2 Silent p.L806L 0.49 TCGA-AZ-6598-01 4 22390718 22390718 C T GPR125 Missense_Mutation p.A906T 0.40 tolerated(0.24) benign(0.141) TCGA-AZ-6598-01 4 24854799 24854799 A G CCDC149 Silent p.A89A 0.43 TCGA-AZ-6598-01 4 25158571 25158571 C T SEPSECS Missense_Mutation p.G99S 0.38 deleterious(0) probably_damaging(0.96) TCGA-AZ-6598-01 4 25780795 25780795 C T SEL1L3 Missense_Mutation p.A830T 0.38 deleterious(0.01) possibly_damaging(0.861) TCGA-AZ-6598-01 4 25835175 25835175 A G SEL1L3 Missense_Mutation p.W293R 0.37 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 4 2701864 2701864 C T FAM193A Missense_Mutation p.S1031F 0.47 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-AZ-6598-01 4 2831768 2831768 C - SH3BP2 Frame_Shift_Del p.V438Wfs*8 0.44 TCGA-AZ-6598-01 4 30724565 30724565 G A PCDH7 Silent p.A507A 0.36 TCGA-AZ-6598-01 4 3105597 3105597 A C HTT Missense_Mutation p.K172T 0.29 probably_damaging(0.956) TCGA-AZ-6598-01 4 3129286 3129286 C T HTT Silent p.T566T 0.44 TCGA-AZ-6598-01 4 3134296 3134296 G A HTT Silent p.Q748Q 0.32 TCGA-AZ-6598-01 4 3184085 3184085 T C HTT Missense_Mutation p.L1585S 0.38 possibly_damaging(0.883) TCGA-AZ-6598-01 4 3188374 3188374 G T HTT Missense_Mutation p.E1639D 0.43 probably_damaging(0.993) TCGA-AZ-6598-01 4 39324960 39324961 - T RFC1 Frame_Shift_Ins p.A241Gfs*20 0.29 TCGA-AZ-6598-01 4 40155844 40155844 T C N4BP2 Missense_Mutation p.V1767A 0.35 deleterious(0.02) possibly_damaging(0.557) TCGA-AZ-6598-01 4 4242185 4242185 G A TMEM128 Silent p.A63A 0.39 TCGA-AZ-6598-01 4 4285458 4285458 A - LYAR Frame_Shift_Del p.F4Lfs*10 0.32 TCGA-AZ-6598-01 4 44680574 44680574 A - GUF1 5'UTR 0.43 TCGA-AZ-6598-01 4 5021054 5021054 C T CYTL1 Missense_Mutation p.R40H 0.41 tolerated(0.1) possibly_damaging(0.548) TCGA-AZ-6598-01 4 515003 515003 G T PIGG Missense_Mutation p.A425S 0.38 tolerated(0.4) benign(0.001) TCGA-AZ-6598-01 4 52860960 52860960 C T LRRC66 Missense_Mutation p.S743N 0.40 tolerated(1) benign(0.156) TCGA-AZ-6598-01 4 52862049 52862049 C T LRRC66 Missense_Mutation p.C380Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 4 55976713 55976714 - G KDR Frame_Shift_Ins p.L371Pfs*2 0.29 TCGA-AZ-6598-01 4 57333820 57333820 G - SRP72 Frame_Shift_Del p.V9Cfs*10 0.12 TCGA-AZ-6598-01 4 6080707 6080707 G A JAKMIP1 Missense_Mutation p.R421C 0.42 deleterious(0.01) possibly_damaging(0.854) TCGA-AZ-6598-01 4 6114561 6114561 C T JAKMIP1 Missense_Mutation p.R6Q 0.36 deleterious(0) possibly_damaging(0.861) TCGA-AZ-6598-01 4 6279413 6279413 C T WFS1 Silent p.T77T 0.41 TCGA-AZ-6598-01 4 62800643 62800643 C T LPHN3 Missense_Mutation p.A665V 0.41 tolerated(0.26) benign(0.153) TCGA-AZ-6598-01 4 6290853 6290853 G A WFS1 Missense_Mutation p.R152K 0.33 tolerated(0.32) possibly_damaging(0.845) TCGA-AZ-6598-01 4 66230818 66230818 C T EPHA5 Missense_Mutation p.R718H 0.22 deleterious(0) probably_damaging(0.992) TCGA-AZ-6598-01 4 6719288 6719288 G A BLOC1S4 3'UTR 0.48 TCGA-AZ-6598-01 4 68384936 68384936 T - CENPC Frame_Shift_Del p.R206Gfs*2 0.40 TCGA-AZ-6598-01 4 68693214 68693214 A C TMPRSS11D Missense_Mutation p.I239M 0.37 deleterious(0) possibly_damaging(0.571) TCGA-AZ-6598-01 4 71201157 71201158 - T CABS1 Frame_Shift_Ins p.S136Ffs*3 0.18 TCGA-AZ-6598-01 4 71508575 71508575 G T ENAM Missense_Mutation p.G478C 0.38 deleterious(0) probably_damaging(0.967) TCGA-AZ-6598-01 4 71510641 71510641 T - ENAM 3'UTR 0.12 TCGA-AZ-6598-01 4 71698864 71698864 C T GRSF1 Missense_Mutation p.R214H 0.33 tolerated(0.16) benign(0.044) TCGA-AZ-6598-01 4 74276089 74276089 A G ALB Missense_Mutation p.S226G 0.32 tolerated(0.07) benign(0.04) TCGA-AZ-6598-01 4 7691291 7691291 G A SORCS2 Missense_Mutation p.A523T 0.51 deleterious(0.04) benign(0.174) TCGA-AZ-6598-01 4 77018831 77018831 T C ART3 Splice_Site p.X272_splice 0.37 TCGA-AZ-6598-01 4 79173613 79173613 C - FRAS1 Frame_Shift_Del p.Q128Nfs*47 0.22 TCGA-AZ-6598-01 4 79420941 79420941 C T FRAS1 Missense_Mutation p.A3061V 0.41 possibly_damaging(0.903) TCGA-AZ-6598-01 4 8098974 8098974 C T ABLIM2 Missense_Mutation p.V64M 0.44 tolerated(0.52) probably_damaging(1) TCGA-AZ-6598-01 4 81122545 81122545 A - PRDM8 Frame_Shift_Del p.N109Tfs*19 0.32 TCGA-AZ-6598-01 4 81207563 81207564 - A FGF5 Frame_Shift_Ins p.T184Nfs*11 0.13 TCGA-AZ-6598-01 4 83765385 83765385 A - SEC31A Intron 0.41 TCGA-AZ-6598-01 4 83905797 83905798 TG - LIN54 Frame_Shift_Del p.T67Sfs*4 0.24 TCGA-AZ-6598-01 4 84339246 84339246 C A HELQ Missense_Mutation p.E1021D 0.40 tolerated(0.07) benign(0.196) TCGA-AZ-6598-01 4 8605819 8605819 G A CPZ Missense_Mutation p.A205T 0.48 tolerated(0.1) benign(0.024) TCGA-AZ-6598-01 4 8620238 8620238 G A CPZ Missense_Mutation p.R529H 0.46 tolerated(0.05) probably_damaging(0.981) TCGA-AZ-6598-01 4 86893363 86893364 - T ARHGAP24 Intron 0.32 TCGA-AZ-6598-01 4 87686568 87686568 C T PTPN13 Silent p.V1395V 0.28 TCGA-AZ-6598-01 4 88116817 88116817 A G KLHL8 5'UTR 0.37 TCGA-AZ-6598-01 4 88723827 88723827 T C IBSP Missense_Mutation p.Y43H 0.41 tolerated(0.11) probably_damaging(0.992) TCGA-AZ-6598-01 4 89199444 89199444 C T PPM1K Missense_Mutation p.A98T 0.08 tolerated(0.17) benign(0.194) TCGA-AZ-6598-01 4 89618591 89618591 C T NAP1L5 Silent p.L105L 0.43 TCGA-AZ-6598-01 4 94750382 94750382 G - ATOH1 Frame_Shift_Del p.E104Sfs*3 0.51 TCGA-AZ-6598-01 4 9783986 9783986 G A DRD5 Silent p.A111A 0.40 TCGA-AZ-6598-01 4 9785349 9785349 G C DRD5 3'UTR 0.35 TCGA-AZ-6598-01 4 9785421 9785421 G T DRD5 3'UTR 0.20 TCGA-AZ-6598-01 5 101631934 101631934 A G SLCO4C1 Silent p.A11A 0.66 TCGA-AZ-6598-01 5 102614313 102614313 C T C5orf30 3'UTR 0.19 TCGA-AZ-6598-01 5 1085528 1085528 C T SLC12A7 Missense_Mutation p.A246T 0.23 tolerated(0.06) probably_damaging(0.974) TCGA-AZ-6598-01 5 110411737 110411737 C T TSLP Missense_Mutation p.R149C 0.30 deleterious(0) probably_damaging(0.973) TCGA-AZ-6598-01 5 111066620 111066620 A - NREP Frame_Shift_Del p.*113N 0.37 TCGA-AZ-6598-01 5 111615967 111615967 A G EPB41L4A Splice_Site p.X86_splice 0.32 TCGA-AZ-6598-01 5 112203070 112203070 T C SRP19 Intron 0.12 TCGA-AZ-6598-01 5 112222807 112222807 C T REEP5 Missense_Mutation p.R142H 0.60 deleterious(0.01) benign(0.114) TCGA-AZ-6598-01 5 112769462 112769462 G - TSSK1B Frame_Shift_Del p.Q359Nfs*43 0.48 TCGA-AZ-6598-01 5 11384886 11384886 G A CTNND2 Silent p.Y356Y 0.26 TCGA-AZ-6598-01 5 122515880 122515880 G A PRDM6 Silent p.Q512Q 0.53 TCGA-AZ-6598-01 5 1280382 1280382 G A TERT Missense_Mutation p.P614L 0.61 tolerated(0.63) benign(0.006) TCGA-AZ-6598-01 5 128302206 128302206 G A SLC27A6 Missense_Mutation p.A126T 0.18 tolerated(0.05) possibly_damaging(0.871) TCGA-AZ-6598-01 5 1293932 1293932 C T TERT Missense_Mutation p.A357T 0.69 deleterious(0) probably_damaging(0.941) TCGA-AZ-6598-01 5 131007514 131007514 T C FNIP1 Missense_Mutation p.T875A 0.60 tolerated(0.72) benign(0.004) TCGA-AZ-6598-01 5 131132659 131132659 G T FNIP1 5'UTR 0.22 TCGA-AZ-6598-01 5 133479299 133479299 G A TCF7 Missense_Mutation p.R348Q 0.56 deleterious(0.01) probably_damaging(0.947) TCGA-AZ-6598-01 5 133686050 133686050 A G CDKL3 Silent p.D143D 0.27 TCGA-AZ-6598-01 5 133914210 133914210 G A JADE2 Missense_Mutation p.D526N 0.24 tolerated(0.29) probably_damaging(0.998) TCGA-AZ-6598-01 5 134871463 134871463 G A NEUROG1 5'UTR 0.58 TCGA-AZ-6598-01 5 137292192 137292193 - T FAM13B Intron 0.36 TCGA-AZ-6598-01 5 137505021 137505021 G - BRD8 Frame_Shift_Del p.R178Gfs*6 0.36 TCGA-AZ-6598-01 5 13776626 13776627 CT - DNAH5 Frame_Shift_Del p.R3098Sfs*14 0.26 TCGA-AZ-6598-01 5 137801548 137801548 C A EGR1 Missense_Mutation p.P33H 0.56 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6598-01 5 137803132 137803132 C - EGR1 Frame_Shift_Del p.H334Tfs*198 0.37 TCGA-AZ-6598-01 5 137910939 137910939 G A HSPA9 Silent p.A23A 0.43 TCGA-AZ-6598-01 5 138643409 138643409 G A MATR3 Missense_Mutation p.R102H 0.57 tolerated(0.07) possibly_damaging(0.747) TCGA-AZ-6598-01 5 138713128 138713128 G A SLC23A1 Silent p.G508G 0.29 TCGA-AZ-6598-01 5 138715386 138715386 C A SLC23A1 Missense_Mutation p.W306C 0.57 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 5 139193236 139193236 G A PSD2 Silent p.L238L 0.23 TCGA-AZ-6598-01 5 139838365 139838365 A T ANKHD1 Missense_Mutation p.E466D 0.26 unknown(0) TCGA-AZ-6598-01 5 139876832 139876832 G A ANKHD1 Silent p.T991T 0.24 TCGA-AZ-6598-01 5 139943486 139943486 C - APBB3 Frame_Shift_Del p.D22Tfs*42 0.36 TCGA-AZ-6598-01 5 139947216 139947216 C A SLC35A4 Silent p.A154A 0.57 TCGA-AZ-6598-01 5 140021523 140021523 C T TMCO6 Missense_Mutation p.A128V 0.34 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 5 140167318 140167318 C T PCDHA1 Silent p.D481D 0.08 TCGA-AZ-6598-01 5 140188449 140188449 C T PCDHA4 Silent p.N559N 0.25 TCGA-AZ-6598-01 5 140188628 140188628 G A PCDHA4 Missense_Mutation p.R619H 0.28 tolerated_low_confidence(0.1) benign(0.024) TCGA-AZ-6598-01 5 140214112 140214112 C T PCDHA7 Silent p.I48I 0.29 TCGA-AZ-6598-01 5 140215471 140215472 GC - PCDHA7 Frame_Shift_Del p.L504Vfs*94 0.29 TCGA-AZ-6598-01 5 140215582 140215582 C T PCDHA7 Silent p.R538R 0.65 TCGA-AZ-6598-01 5 140222244 140222244 C T PCDHA8 Silent p.A446A 0.62 TCGA-AZ-6598-01 5 140309225 140309225 T C PCDHAC1 Intron 0.28 TCGA-AZ-6598-01 5 140431234 140431234 C T PCDHB1 Missense_Mutation p.A60V 0.17 tolerated(0.06) benign(0.009) TCGA-AZ-6598-01 5 140476542 140476542 C T PCDHB2 Missense_Mutation p.S723L 0.24 tolerated_low_confidence(0.05) benign(0.013) TCGA-AZ-6598-01 5 140531706 140531706 G A PCDHB6 Missense_Mutation p.R623H 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.628) TCGA-AZ-6598-01 5 140554450 140554450 G A PCDHB7 Silent p.P678P 0.23 TCGA-AZ-6598-01 5 140572416 140572416 C T PCDHB10 Silent p.G97G 0.26 TCGA-AZ-6598-01 5 140604684 140604684 G A PCDHB14 Missense_Mutation p.R536H 0.21 tolerated_low_confidence(0.05) benign(0.027) TCGA-AZ-6598-01 5 140627192 140627192 G T PCDHB15 Missense_Mutation p.Q682H 0.33 tolerated_low_confidence(0.07) benign(0.041) TCGA-AZ-6598-01 5 140750261 140750261 G A PCDHGB3 Silent p.S100S 0.65 TCGA-AZ-6598-01 5 140772639 140772639 G A PCDHGA8 Missense_Mutation p.A87T 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-AZ-6598-01 5 140812236 140812236 C T PCDHGA12 Missense_Mutation p.A637V 0.36 deleterious_low_confidence(0.03) benign(0.292) TCGA-AZ-6598-01 5 140856554 140856554 G A PCDHGC3 Missense_Mutation p.V291M 0.61 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-6598-01 5 140866938 140866938 G A PCDHGC4 Missense_Mutation p.C733Y 0.36 deleterious(0.01) benign(0.134) TCGA-AZ-6598-01 5 14270941 14270941 A - TRIO Frame_Shift_Del p.N57Tfs*4 0.24 TCGA-AZ-6598-01 5 14487781 14487781 C - TRIO Frame_Shift_Del p.V2351Cfs*62 0.22 TCGA-AZ-6598-01 5 145609290 145609290 A - RBM27 Frame_Shift_Del p.R138Efs*39 0.38 TCGA-AZ-6598-01 5 145859645 145859646 - A TCERG1 Frame_Shift_Ins p.R628Tfs*6 0.49 TCGA-AZ-6598-01 5 145886649 145886649 G A TCERG1 Missense_Mutation p.R930H 0.25 deleterious(0) unknown(0) TCGA-AZ-6598-01 5 147051261 147051261 G A JAKMIP2 Silent p.L37L 0.28 TCGA-AZ-6598-01 5 147465986 147465986 A T SPINK5 Nonsense_Mutation p.K101* 0.44 TCGA-AZ-6598-01 5 148207792 148207793 AA - ADRB2 3'UTR 0.27 TCGA-AZ-6598-01 5 148612822 148612822 C - ABLIM3 Frame_Shift_Del p.P284Lfs*94 0.42 TCGA-AZ-6598-01 5 149212318 149212318 C T PPARGC1B Nonsense_Mutation p.Q228* 0.62 TCGA-AZ-6598-01 5 149212796 149212796 G A PPARGC1B Missense_Mutation p.R387H 0.22 tolerated(1) benign(0) TCGA-AZ-6598-01 5 149602089 149602089 G A CAMK2A 3'Flank 0.57 TCGA-AZ-6598-01 5 149747446 149747446 C T TCOF1 Missense_Mutation p.A115V 0.24 tolerated(0.23) benign(0.124) TCGA-AZ-6598-01 5 149932868 149932868 C T NDST1 Nonsense_Mutation p.R875* 0.25 TCGA-AZ-6598-01 5 150051952 150051952 G A MYOZ3 Missense_Mutation p.A159T 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-AZ-6598-01 5 150277673 150277673 G A ZNF300 Silent p.D88D 0.57 TCGA-AZ-6598-01 5 150647102 150647103 - C GM2A 3'UTR 0.22 TCGA-AZ-6598-01 5 153434675 153434675 C T MFAP3 3'UTR 0.53 TCGA-AZ-6598-01 5 153796555 153796555 C - GALNT10 3'UTR 0.16 TCGA-AZ-6598-01 5 154193682 154193682 G - LARP1 3'UTR 0.44 TCGA-AZ-6598-01 5 154282719 154282719 C T GEMIN5 Silent p.V883V 0.16 TCGA-AZ-6598-01 5 154282722 154282722 A T GEMIN5 Missense_Mutation p.D882E 0.14 tolerated(0.1) benign(0.012) TCGA-AZ-6598-01 5 154287349 154287349 G A GEMIN5 Missense_Mutation p.R733W 0.30 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 5 154394708 154394708 T G KIF4B Missense_Mutation p.L430R 0.28 deleterious(0) possibly_damaging(0.786) TCGA-AZ-6598-01 5 155044 155044 C T PLEKHG4B Silent p.L327L 0.25 TCGA-AZ-6598-01 5 156381740 156381740 G A TIMD4 Missense_Mutation p.T29M 0.28 tolerated(0.21) benign(0.329) TCGA-AZ-6598-01 5 156479624 156479624 C T HAVCR1 Missense_Mutation p.V141I 0.58 tolerated(0.63) unknown(0) TCGA-AZ-6598-01 5 156590017 156590017 G T FAM71B Missense_Mutation p.P420H 0.50 tolerated(0.13) benign(0.017) TCGA-AZ-6598-01 5 157098752 157098752 C T C5orf52 Missense_Mutation p.R44C 0.32 deleterious(0.03) benign(0.13) TCGA-AZ-6598-01 5 158139301 158139301 G A EBF1 Silent p.Y470Y 0.25 TCGA-AZ-6598-01 5 158621754 158621754 A G RNF145 Missense_Mutation p.L118P 0.56 deleterious(0.01) probably_damaging(0.995) TCGA-AZ-6598-01 5 158630639 158630639 T C RNF145 Missense_Mutation p.K26R 0.33 tolerated_low_confidence(0.55) benign(0) TCGA-AZ-6598-01 5 159344497 159344497 C T ADRA1B Silent p.C195C 0.35 TCGA-AZ-6598-01 5 15937067 15937067 C T FBXL7 Silent p.S416S 0.40 TCGA-AZ-6598-01 5 159520656 159520656 T - PWWP2A Frame_Shift_Del p.K334Rfs*25 0.11 TCGA-AZ-6598-01 5 159626135 159626135 A G FABP6 Missense_Mutation p.M8V 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6598-01 5 161322768 161322768 C T GABRA1 Missense_Mutation p.A318V 0.55 deleterious(0) probably_damaging(0.992) TCGA-AZ-6598-01 5 16508867 16508867 A - FAM134B Intron 0.19 TCGA-AZ-6598-01 5 16701528 16701528 C T MYO10 Silent p.E992E 0.30 TCGA-AZ-6598-01 5 167589619 167589619 G A TENM2 Missense_Mutation p.G809D 0.19 deleterious(0) possibly_damaging(0.484) TCGA-AZ-6598-01 5 16780850 16780850 T G MYO10 Missense_Mutation p.Y243S 0.17 deleterious(0.01) benign(0.11) TCGA-AZ-6598-01 5 167979814 167979814 C A PANK3 3'UTR 0.81 TCGA-AZ-6598-01 5 171491742 171491742 C T STK10 Silent p.T688T 0.31 TCGA-AZ-6598-01 5 174869190 174869190 G A DRD1 Missense_Mutation p.P305S 0.27 tolerated(0.23) benign(0.005) TCGA-AZ-6598-01 5 175110841 175110841 A G HRH2 Missense_Mutation p.Y202C 0.54 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 5 175110930 175110930 G A HRH2 Missense_Mutation p.A232T 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-AZ-6598-01 5 175306037 175306037 C T CPLX2 Missense_Mutation p.A53V 0.27 tolerated(0.15) benign(0.034) TCGA-AZ-6598-01 5 175523847 175523847 G A FAM153B Missense_Mutation p.G52S 0.45 tolerated_low_confidence(0.75) benign(0.052) TCGA-AZ-6598-01 5 175926049 175926049 T A FAF2 Missense_Mutation p.V325E 0.20 tolerated(1) benign(0.001) TCGA-AZ-6598-01 5 176056614 176056614 G A SNCB Silent p.G14G 0.31 TCGA-AZ-6598-01 5 176468195 176468195 C T ZNF346 Missense_Mutation p.L82F 0.32 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 5 176687162 176687162 C T NSD1 Silent p.C1713C 0.24 TCGA-AZ-6598-01 5 176764524 176764524 C T LMAN2 Missense_Mutation p.R172H 0.29 tolerated(0.82) benign(0.022) TCGA-AZ-6598-01 5 176831327 176831327 C T F12 Silent p.Q296Q 0.70 TCGA-AZ-6598-01 5 176863253 176863253 T C GRK6 Missense_Mutation p.S413P 0.18 deleterious(0.02) possibly_damaging(0.832) TCGA-AZ-6598-01 5 176886159 176886159 G T DBN1 Missense_Mutation p.L358M 0.30 tolerated(0.06) benign(0.319) TCGA-AZ-6598-01 5 177151365 177151365 T G FAM153A Splice_Site p.X258_splice 0.47 TCGA-AZ-6598-01 5 177573282 177573282 T C RMND5B Splice_Site p.X287_splice 0.30 TCGA-AZ-6598-01 5 177632873 177632873 T C HNRNPAB Silent p.D80D 0.20 TCGA-AZ-6598-01 5 178040515 178040515 T C CLK4 Missense_Mutation p.H262R 0.29 deleterious(0) possibly_damaging(0.833) TCGA-AZ-6598-01 5 178152452 178152452 T C ZNF354A Missense_Mutation p.K61E 0.32 tolerated(0.32) benign(0.001) TCGA-AZ-6598-01 5 178413416 178413416 C T GRM6 Silent p.T613T 0.22 TCGA-AZ-6598-01 5 178506400 178506400 A G ZNF354C Missense_Mutation p.T323A 0.53 deleterious(0.02) probably_damaging(0.995) TCGA-AZ-6598-01 5 178579173 178579173 G - ADAMTS2 Frame_Shift_Del p.L534Wfs*20 0.25 TCGA-AZ-6598-01 5 179069467 179069467 C T C5orf60 Nonsense_Mutation p.W236* 0.61 TCGA-AZ-6598-01 5 179222879 179222879 G A LTC4S Intron 0.73 TCGA-AZ-6598-01 5 179707542 179707542 T C MAPK9 Missense_Mutation p.D7G 0.53 tolerated(0.06) benign(0.045) TCGA-AZ-6598-01 5 1798666 1798666 C A MRPL36 3'UTR 0.23 TCGA-AZ-6598-01 5 180219349 180219349 A T MGAT1 Missense_Mutation p.V208E 0.51 probably_damaging(0.997) TCGA-AZ-6598-01 5 180335641 180335641 C T BTNL8 Silent p.D35D 0.28 TCGA-AZ-6598-01 5 180581953 180581953 G A OR2V2 Nonsense_Mutation p.W4* 0.63 TCGA-AZ-6598-01 5 180622589 180622589 C A TRIM7 Missense_Mutation p.Q371H 0.32 tolerated(0.07) probably_damaging(0.959) TCGA-AZ-6598-01 5 26881590 26881590 G A CDH9 Silent p.G675G 0.56 TCGA-AZ-6598-01 5 26886120 26886120 G A CDH9 Missense_Mutation p.P529S 0.53 tolerated(0.08) benign(0.077) TCGA-AZ-6598-01 5 26903872 26903872 T - CDH9 Frame_Shift_Del p.A292Pfs*38 0.27 TCGA-AZ-6598-01 5 31526570 31526570 G - DROSHA Frame_Shift_Del p.P157Lfs*69 0.25 TCGA-AZ-6598-01 5 34004741 34004741 T C AMACR Missense_Mutation p.I164V 0.25 tolerated(0.08) possibly_damaging(0.574) TCGA-AZ-6598-01 5 34020619 34020619 T C C1QTNF3 3'UTR 0.61 TCGA-AZ-6598-01 5 34823454 34823454 C T RAI14 Nonsense_Mutation p.Q506* 0.10 TCGA-AZ-6598-01 5 34949703 34949704 - A DNAJC21 Frame_Shift_Ins p.C417Vfs*21 0.26 TCGA-AZ-6598-01 5 3601120 3601120 C T IRX1 Missense_Mutation p.T470M 0.51 deleterious(0) benign(0.321) TCGA-AZ-6598-01 5 3601173 3601173 T - IRX1 3'UTR 0.38 TCGA-AZ-6598-01 5 36122474 36122474 T - LMBRD2 Frame_Shift_Del p.N343Mfs*56 0.39 TCGA-AZ-6598-01 5 37065025 37065025 A G NIPBL 3'UTR 0.12 TCGA-AZ-6598-01 5 41005661 41005661 C T MROH2B Missense_Mutation p.R1279Q 0.50 deleterious(0.02) probably_damaging(0.92) TCGA-AZ-6598-01 5 41149516 41149516 T G C6 Missense_Mutation p.K817T 0.24 tolerated(0.4) benign(0.026) TCGA-AZ-6598-01 5 43280913 43280913 T - NIM1K 3'UTR 0.27 TCGA-AZ-6598-01 5 43535710 43535710 C A PAIP1 Missense_Mutation p.K335N 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-AZ-6598-01 5 480055 480055 G T SLC9A3 Missense_Mutation p.L515I 0.40 tolerated(0.41) benign(0.311) TCGA-AZ-6598-01 5 50683460 50683460 G A ISL1 Missense_Mutation p.E119K 0.29 deleterious(0.01) probably_damaging(0.974) TCGA-AZ-6598-01 5 52235428 52235428 C T ITGA1 Silent p.N1029N 0.54 TCGA-AZ-6598-01 5 52942236 52942236 G A NDUFS4 Splice_Site p.X117_splice 0.54 TCGA-AZ-6598-01 5 53815022 53815022 C - SNX18 Frame_Shift_Del p.A416Pfs*42 0.43 TCGA-AZ-6598-01 5 54405875 54405875 C T GZMA Silent p.C218C 0.54 TCGA-AZ-6598-01 5 54593173 54593173 A G DHX29 Silent p.H105H 0.12 TCGA-AZ-6598-01 5 56152566 56152566 C T MAP3K1 Nonsense_Mutation p.R208* 0.59 TCGA-AZ-6598-01 5 56176934 56176934 A T MAP3K1 Missense_Mutation p.D735V 0.22 tolerated(0.13) benign(0.204) TCGA-AZ-6598-01 5 56183277 56183277 C T MAP3K1 Missense_Mutation p.A1396V 0.27 tolerated(0.13) probably_damaging(0.946) TCGA-AZ-6598-01 5 56777931 56777931 T C ACTBL2 Missense_Mutation p.T202A 0.27 tolerated_low_confidence(0.07) benign(0.173) TCGA-AZ-6598-01 5 63256991 63256991 C T HTR1A Missense_Mutation p.A186T 0.27 tolerated(0.47) benign(0.377) TCGA-AZ-6598-01 5 63257156 63257156 C T HTR1A Missense_Mutation p.A131T 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 5 634035 634035 C T CEP72 Missense_Mutation p.R222C 0.26 tolerated(0.2) benign(0.025) TCGA-AZ-6598-01 5 64824380 64824380 T - CENPK Frame_Shift_Del p.M166Cfs*4 0.37 TCGA-AZ-6598-01 5 65349318 65349319 - A ERBB2IP Frame_Shift_Ins p.D727Rfs*3 0.09 TCGA-AZ-6598-01 5 65455140 65455140 C T SREK1 Missense_Mutation p.P130L 0.32 deleterious(0) probably_damaging(0.966) TCGA-AZ-6598-01 5 6755007 6755008 - A PAPD7 Frame_Shift_Ins p.H529Tfs*80 0.12 TCGA-AZ-6598-01 5 68578752 68578752 G T CCDC125 Missense_Mutation p.P447H 0.56 tolerated(0.2) possibly_damaging(0.642) TCGA-AZ-6598-01 5 70671642 70671643 - A RP11-136K7.2 Intron 0.85 TCGA-AZ-6598-01 5 70820008 70820008 A C BDP1 Missense_Mutation p.D1877A 0.56 deleterious(0.02) benign(0.062) TCGA-AZ-6598-01 5 71622552 71622552 A - PTCD2 Frame_Shift_Del p.N113Mfs*25 0.38 TCGA-AZ-6598-01 5 72168513 72168513 A G TNPO1 Missense_Mutation p.Q215R 0.26 tolerated(0.14) benign(0.01) TCGA-AZ-6598-01 5 72171497 72171497 G A TNPO1 Missense_Mutation p.R245Q 0.11 tolerated(0.7) benign(0.027) TCGA-AZ-6598-01 5 72264328 72264329 - A FCHO2 Frame_Shift_Ins p.N15Kfs*2 0.54 TCGA-AZ-6598-01 5 72333043 72333046 GTAA - FCHO2 Splice_Site p.X305_splice 0.23 TCGA-AZ-6598-01 5 73930852 73930852 C T ENC1 Missense_Mutation p.A487T 0.48 deleterious(0) probably_damaging(0.936) TCGA-AZ-6598-01 5 73931588 73931588 C A ENC1 Silent p.L241L 0.29 TCGA-AZ-6598-01 5 74324983 74324983 G - GCNT4 Frame_Shift_Del p.H294Ifs*14 0.20 TCGA-AZ-6598-01 5 74801891 74801891 A G COL4A3BP Silent p.N177N 0.18 TCGA-AZ-6598-01 5 75960958 75960958 A - IQGAP2 Frame_Shift_Del p.T881Hfs*2 0.21 TCGA-AZ-6598-01 5 75970492 75970492 C T IQGAP2 Missense_Mutation p.S1162L 0.32 tolerated(0.15) benign(0.085) TCGA-AZ-6598-01 5 75993826 75993826 A G IQGAP2 Silent p.Q1407Q 0.27 TCGA-AZ-6598-01 5 76745590 76745590 A G WDR41 Missense_Mutation p.V231A 0.07 deleterious(0) benign(0.289) TCGA-AZ-6598-01 5 76932915 76932916 - G OTP Frame_Shift_Ins p.G60Rfs*76 0.30 TCGA-AZ-6598-01 5 78596648 78596648 C T JMY Missense_Mutation p.R615W 0.13 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 5 7867769 7867769 T - FASTKD3 Frame_Shift_Del p.K143Rfs*36 0.26 TCGA-AZ-6598-01 5 79048516 79048516 A G CMYA5 Missense_Mutation p.E3670G 0.29 possibly_damaging(0.689) TCGA-AZ-6598-01 5 81571812 81571813 - G RPS23 3'UTR 0.33 TCGA-AZ-6598-01 5 82808252 82808252 A - VCAN Intron 0.32 TCGA-AZ-6598-01 5 89988582 89988582 C T GPR98 Missense_Mutation p.A2371V 0.29 probably_damaging(0.935) TCGA-AZ-6598-01 5 90086698 90086698 G A GPR98 Nonsense_Mutation p.W4684* 0.47 TCGA-AZ-6598-01 5 93812839 93812839 C T KIAA0825 Missense_Mutation p.E402K 0.19 tolerated(0.06) benign(0.099) TCGA-AZ-6598-01 5 94289048 94289048 C T MCTP1 Missense_Mutation p.V286M 0.21 deleterious(0) probably_damaging(0.996) TCGA-AZ-6598-01 5 94833131 94833131 G A TTC37 Nonsense_Mutation p.R1209* 0.58 TCGA-AZ-6598-01 5 94838684 94838684 C T TTC37 Missense_Mutation p.V1081I 0.30 deleterious(0.02) benign(0.04) TCGA-AZ-6598-01 5 94890909 94890909 C T ARSK 5'UTR 0.14 TCGA-AZ-6598-01 5 95768637 95768637 G A PCSK1 Missense_Mutation p.A37V 0.12 tolerated(1) benign(0.006) TCGA-AZ-6598-01 5 9629128 9629128 C T TAS2R1 3'UTR 0.58 TCGA-AZ-6598-01 5 98191981 98191981 A T CHD1 3'UTR 0.37 TCGA-AZ-6598-01 6 100062533 100062533 G A PRDM13 Silent p.P674P 0.40 TCGA-AZ-6598-01 6 105405027 105405027 C T LIN28B 5'UTR 0.45 TCGA-AZ-6598-01 6 105733371 105733371 C T PREP Silent p.T513T 0.43 TCGA-AZ-6598-01 6 10586945 10586946 - T GCNT2 Intron 0.10 TCGA-AZ-6598-01 6 106960727 106960727 C T AIM1 Silent p.L171L 0.45 TCGA-AZ-6598-01 6 107956605 107956605 G A SOBP Missense_Mutation p.G853R 0.35 deleterious(0.04) benign(0.196) TCGA-AZ-6598-01 6 108372296 108372297 - T OSTM1 Frame_Shift_Ins p.M241Nfs*3 0.31 TCGA-AZ-6598-01 6 108497789 108497789 C T NR2E1 Silent p.N114N 0.45 TCGA-AZ-6598-01 6 10935386 10935386 T - SYCP2L Frame_Shift_Del p.L595* 0.33 TCGA-AZ-6598-01 6 110567276 110567276 T C METTL24 Missense_Mutation p.E325G 0.18 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 6 111913244 111913244 G T TRAF3IP2 Missense_Mutation p.P16T 0.41 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-AZ-6598-01 6 112390868 112390868 A - WISP3 3'UTR 0.28 TCGA-AZ-6598-01 6 112463411 112463411 C T LAMA4 Silent p.T859T 0.27 TCGA-AZ-6598-01 6 112466086 112466086 C A LAMA4 Silent p.T801T 0.49 TCGA-AZ-6598-01 6 112508790 112508790 G A LAMA4 Silent p.C276C 0.41 TCGA-AZ-6598-01 6 114264518 114264518 T - HDAC2 Frame_Shift_Del p.T459Qfs*47 0.28 TCGA-AZ-6598-01 6 11538550 11538550 T C TMEM170B Missense_Mutation p.S14P 0.44 deleterious(0.03) benign(0.207) TCGA-AZ-6598-01 6 116783309 116783309 C T FAM26F Missense_Mutation p.R73C 0.50 deleterious(0) probably_damaging(0.982) TCGA-AZ-6598-01 6 117647482 117647482 T - ROS1 Frame_Shift_Del p.N1821Tfs*2 0.33 TCGA-AZ-6598-01 6 118953724 118953724 C T CEP85L Missense_Mutation p.A45T 0.39 tolerated(0.41) benign(0.057) TCGA-AZ-6598-01 6 121447572 121447572 G T TBC1D32 Missense_Mutation p.L979I 0.26 tolerated(0.09) benign(0.113) TCGA-AZ-6598-01 6 121624805 121624805 A - TBC1D32 Frame_Shift_Del p.F346Lfs*3 0.09 TCGA-AZ-6598-01 6 126080822 126080822 A G HEY2 Silent p.A296A 0.10 TCGA-AZ-6598-01 6 127767596 127767596 C - KIAA0408 Frame_Shift_Del p.G623Dfs*4 0.31 TCGA-AZ-6598-01 6 127836911 127836911 G A SOGA3 Silent p.G283G 0.42 TCGA-AZ-6598-01 6 128291226 128291226 A - PTPRK 3'UTR 0.73 TCGA-AZ-6598-01 6 128318069 128318069 T - PTPRK Frame_Shift_Del p.N915Tfs*7 0.13 TCGA-AZ-6598-01 6 13185116 13185117 - A PHACTR1 Frame_Shift_Ins p.P139Tfs*9 0.28 TCGA-AZ-6598-01 6 13185130 13185130 C T PHACTR1 Missense_Mutation p.A141V 0.32 tolerated(0.26) probably_damaging(0.935) TCGA-AZ-6598-01 6 132859511 132859511 C T TAAR9 Missense_Mutation p.S28L 0.45 deleterious(0.03) benign(0.212) TCGA-AZ-6598-01 6 13287429 13287429 T A TBC1D7 Intron 0.41 TCGA-AZ-6598-01 6 132910785 132910785 G A TAAR5 Missense_Mutation p.A14V 0.39 tolerated(0.68) benign(0.001) TCGA-AZ-6598-01 6 133849871 133849871 G T EYA4 Missense_Mutation p.M616I 0.27 deleterious(0.04) benign(0.326) TCGA-AZ-6598-01 6 135560335 135560335 T - MIR548A2 RNA 0.33 TCGA-AZ-6598-01 6 136597290 136597290 T - BCLAF1 Frame_Shift_Del p.N458Ifs*10 0.33 TCGA-AZ-6598-01 6 136599103 136599103 C T BCLAF1 Missense_Mutation p.A306T 0.14 tolerated(1) benign(0.001) TCGA-AZ-6598-01 6 137147527 137147527 A G PEX7 Missense_Mutation p.S87G 0.09 tolerated(0.4) benign(0.003) TCGA-AZ-6598-01 6 137519505 137519506 CT - IFNGR1 Frame_Shift_Del p.S378Ffs*6 0.42 TCGA-AZ-6598-01 6 137522041 137522041 T - IFNGR1 Frame_Shift_Del p.S280Afs*2 0.27 TCGA-AZ-6598-01 6 137525636 137525636 T - IFNGR1 Frame_Shift_Del p.I127Lfs*16 0.32 TCGA-AZ-6598-01 6 138528182 138528182 G T KIAA1244 Missense_Mutation p.E47D 0.36 tolerated(0.19) benign(0.018) TCGA-AZ-6598-01 6 1390475 1390475 C A FOXF2 Missense_Mutation p.P98H 0.36 tolerated(0.07) benign(0.253) TCGA-AZ-6598-01 6 139487597 139487598 CG - HECA Frame_Shift_Del p.R152Qfs*65 0.28 TCGA-AZ-6598-01 6 139694831 139694831 G - CITED2 Frame_Shift_Del p.P84Rfs*63 0.33 TCGA-AZ-6598-01 6 142519710 142519710 C T VTA1 Missense_Mutation p.H219Y 0.47 tolerated(0.24) probably_damaging(0.963) TCGA-AZ-6598-01 6 144086745 144086746 - C PHACTR2 Frame_Shift_Ins p.L351Sfs*4 0.38 TCGA-AZ-6598-01 6 144508371 144508371 G A STX11 Missense_Mutation p.A203T 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 6 146262964 146262964 A - SHPRH Frame_Shift_Del p.L762Wfs*6 0.23 TCGA-AZ-6598-01 6 146755081 146755081 C T GRM1 Missense_Mutation p.R912C 0.31 deleterious(0) benign(0.117) TCGA-AZ-6598-01 6 146755216 146755216 G A GRM1 Missense_Mutation p.V957I 0.48 tolerated(0.2) benign(0.241) TCGA-AZ-6598-01 6 146993531 146993531 G A ADGB Missense_Mutation p.V339M 0.12 tolerated(0.21) benign(0.001) TCGA-AZ-6598-01 6 148835574 148835574 A - SASH1 Frame_Shift_Del p.K283Nfs*80 0.27 TCGA-AZ-6598-01 6 149912053 149912053 G A GINM1 3'UTR 0.47 TCGA-AZ-6598-01 6 150004239 150004239 T - LATS1 Frame_Shift_Del p.K662Nfs*3 0.32 TCGA-AZ-6598-01 6 150713596 150713596 G A IYD Missense_Mutation p.M162I 0.31 tolerated(0.18) benign(0.007) TCGA-AZ-6598-01 6 151130361 151130361 G A PLEKHG1 Missense_Mutation p.D345N 0.40 deleterious(0) possibly_damaging(0.614) TCGA-AZ-6598-01 6 151687691 151687691 C A ZBTB2 Missense_Mutation p.Q170H 0.10 tolerated(0.1) benign(0.045) TCGA-AZ-6598-01 6 152552673 152552673 C T SYNE1 Silent p.Q6964Q 0.38 TCGA-AZ-6598-01 6 152826386 152826386 A G SYNE1 Missense_Mutation p.F243S 0.39 probably_damaging(0.933) TCGA-AZ-6598-01 6 154763352 154763352 T C CNKSR3 Missense_Mutation p.N97D 0.37 tolerated(0.08) possibly_damaging(0.499) TCGA-AZ-6598-01 6 15520402 15520402 C T JARID2 Missense_Mutation p.R1221C 0.14 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-AZ-6598-01 6 155470359 155470359 A T TIAM2 Intron 0.42 TCGA-AZ-6598-01 6 158507940 158507940 C T SYNJ2 Missense_Mutation p.R1088C 0.34 deleterious_low_confidence(0) benign(0.028) TCGA-AZ-6598-01 6 159654435 159654435 C T FNDC1 Missense_Mutation p.S964F 0.15 tolerated_low_confidence(0.08) unknown(0) TCGA-AZ-6598-01 6 159670156 159670156 C T FNDC1 Silent p.G1592G 0.37 TCGA-AZ-6598-01 6 160169553 160169553 G T WTAP Intron 0.29 TCGA-AZ-6598-01 6 160485884 160485884 C T IGF2R Nonsense_Mutation p.R1356* 0.11 TCGA-AZ-6598-01 6 160524812 160524814 AGG - IGF2R In_Frame_Del p.R2345del 0.15 TCGA-AZ-6598-01 6 160663417 160663417 T - SLC22A2 Frame_Shift_Del p.I433Lfs*17 0.31 TCGA-AZ-6598-01 6 160664608 160664608 A G SLC22A2 Silent p.P425P 0.39 TCGA-AZ-6598-01 6 160903833 160903833 G T LPAL2 RNA 0.46 TCGA-AZ-6598-01 6 1613147 1613147 C A FOXC1 3'UTR 0.44 TCGA-AZ-6598-01 6 1613505 1613505 C A FOXC1 3'UTR 0.10 TCGA-AZ-6598-01 6 16147161 16147161 G A MYLIP 3'Flank 0.40 TCGA-AZ-6598-01 6 161532871 161532871 C T MAP3K4 Missense_Mutation p.A1467V 0.34 deleterious(0) probably_damaging(0.976) TCGA-AZ-6598-01 6 161560605 161560605 C T AGPAT4 Silent p.T297T 0.36 TCGA-AZ-6598-01 6 161575340 161575340 G A AGPAT4 Silent p.G117G 0.29 TCGA-AZ-6598-01 6 161771025 161771025 C T PARK2 3'UTR 0.47 TCGA-AZ-6598-01 6 161771035 161771035 C T PARK2 3'UTR 0.35 TCGA-AZ-6598-01 6 163987933 163987933 T - QKI Intron 0.25 TCGA-AZ-6598-01 6 167417098 167417098 A - FGFR1OP Intron 0.34 TCGA-AZ-6598-01 6 168465579 168465579 A G FRMD1 Missense_Mutation p.F207S 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-AZ-6598-01 6 168479632 168479632 G A FRMD1 Missense_Mutation p.A48V 0.27 tolerated(0.36) benign(0) TCGA-AZ-6598-01 6 169067293 169067293 G A SMOC2 3'UTR 0.46 TCGA-AZ-6598-01 6 169620359 169620359 G A THBS2 Missense_Mutation p.R1149W 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 6 169622345 169622345 T A THBS2 Missense_Mutation p.T1074S 0.49 deleterious(0.02) benign(0.051) TCGA-AZ-6598-01 6 169626350 169626350 A G THBS2 Silent p.T821T 0.35 TCGA-AZ-6598-01 6 170626978 170626978 G A FAM120B Missense_Mutation p.G167D 0.47 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 6 170871037 170871037 G A TBP Silent p.Q71Q 0.31 TCGA-AZ-6598-01 6 22287740 22287740 C T PRL Missense_Mutation p.R192H 0.47 deleterious(0.04) probably_damaging(0.993) TCGA-AZ-6598-01 6 26124576 26124576 A G HIST1H2AC Missense_Mutation p.N39S 0.35 tolerated_low_confidence(0.06) benign(0.006) TCGA-AZ-6598-01 6 26156678 26156680 GAA - HIST1H1E In_Frame_Del p.K23del 0.42 TCGA-AZ-6598-01 6 26459819 26459819 C T BTN2A1 Missense_Mutation p.R65W 0.39 deleterious(0.01) probably_damaging(1) TCGA-AZ-6598-01 6 26598274 26598274 T A ABT1 Missense_Mutation p.L125Q 0.45 deleterious(0) probably_damaging(0.996) TCGA-AZ-6598-01 6 27115078 27115078 G A HIST1H2AH Silent p.E57E 0.11 TCGA-AZ-6598-01 6 27219760 27219760 G - PRSS16 Frame_Shift_Del p.G318Afs*30 0.34 TCGA-AZ-6598-01 6 27277105 27277105 G A POM121L2 Missense_Mutation p.H949Y 0.47 deleterious(0) benign(0.324) TCGA-AZ-6598-01 6 27879373 27879373 C T OR2B2 Missense_Mutation p.G242D 0.44 deleterious(0) probably_damaging(0.959) TCGA-AZ-6598-01 6 28227519 28227520 GA - NKAPL Frame_Shift_Del p.R127Dfs*8 0.34 TCGA-AZ-6598-01 6 28333538 28333538 A T ZKSCAN3 Missense_Mutation p.T365S 0.43 deleterious(0.02) probably_damaging(0.963) TCGA-AZ-6598-01 6 28829117 28829117 G A XXbac-BPG308K3.6 RNA 0.50 TCGA-AZ-6598-01 6 28876612 28876612 T - TRIM27 Frame_Shift_Del p.M298Cfs*11 0.14 TCGA-AZ-6598-01 6 29572673 29572673 G T GABBR1 Silent p.S844S 0.37 TCGA-AZ-6598-01 6 30131724 30131726 AGA - TRIM15 In_Frame_Del p.K89del 0.34 TCGA-AZ-6598-01 6 30622613 30622613 C T DHX16 Missense_Mutation p.R956Q 0.43 deleterious(0.03) unknown(0) TCGA-AZ-6598-01 6 31380178 31380180 TTA - MICA In_Frame_Del p.Y326del 0.32 TCGA-AZ-6598-01 6 31548880 31548880 G A LTB Missense_Mutation p.T114M 0.44 deleterious(0.01) benign(0.038) TCGA-AZ-6598-01 6 31640097 31640097 C T CSNK2B-LY6G5B-1181 3'UTR 0.40 TCGA-AZ-6598-01 6 31829904 31829904 T C NEU1 Missense_Mutation p.D75G 0.43 tolerated(0.34) benign(0.003) TCGA-AZ-6598-01 6 31832500 31832500 C A SLC44A4 Missense_Mutation p.G647V 0.12 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 6 31901543 31901543 C T CFB Missense_Mutation p.T138M 0.33 deleterious(0.02) benign(0.185) TCGA-AZ-6598-01 6 31936528 31936528 G A SKIV2L Silent p.S1045S 0.38 TCGA-AZ-6598-01 6 32021244 32021244 T G TNXB Silent p.P2902P 0.41 TCGA-AZ-6598-01 6 32064671 32064671 C T TNXB Missense_Mutation p.R320H 0.43 probably_damaging(0.984) TCGA-AZ-6598-01 6 32148080 32148080 T - RNF5 Frame_Shift_Del p.W176Gfs*22 0.35 TCGA-AZ-6598-01 6 32163228 32163230 CTC - NOTCH4 In_Frame_Del p.G1999del 0.67 TCGA-AZ-6598-01 6 32714096 32714096 C T HLA-DQA2 Silent p.G231G 0.40 TCGA-AZ-6598-01 6 32811743 32811743 G - PSMB8 Frame_Shift_Del p.R11Efs*74 0.16 TCGA-AZ-6598-01 6 33048592 33048592 C T HLA-DPB1 Missense_Mutation p.R82W 0.09 deleterious(0) probably_damaging(0.987) TCGA-AZ-6598-01 6 33176578 33176578 G - RING1 5'UTR 0.42 TCGA-AZ-6598-01 6 33380050 33380050 C - PHF1 Frame_Shift_Del p.R6Gfs*2 0.29 TCGA-AZ-6598-01 6 33408546 33408546 C T SYNGAP1 Missense_Mutation p.R573W 0.39 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 6 33631581 33631581 C T ITPR3 Missense_Mutation p.P358S 0.26 deleterious(0.05) benign(0.26) TCGA-AZ-6598-01 6 33660629 33660631 AGA - ITPR3 In_Frame_Del p.K2530del 0.27 TCGA-AZ-6598-01 6 33668283 33668283 C T UQCC2 Missense_Mutation p.R74H 0.31 tolerated(0.05) benign(0.094) TCGA-AZ-6598-01 6 34498365 34498365 G A PACSIN1 Splice_Site p.X346_splice 0.41 TCGA-AZ-6598-01 6 348804 348804 C T DUSP22 Silent p.S157S 0.13 TCGA-AZ-6598-01 6 35107882 35107882 A - TCP11 Intron 0.30 TCGA-AZ-6598-01 6 37622131 37622131 G A MDGA1 Missense_Mutation p.R301W 0.45 deleterious(0) possibly_damaging(0.745) TCGA-AZ-6598-01 6 38800200 38800200 G A DNAH8 Missense_Mutation p.A1214T 0.45 benign(0.009) TCGA-AZ-6598-01 6 38831778 38831778 T - DNAH8 Frame_Shift_Del p.S1932Lfs*8 0.28 TCGA-AZ-6598-01 6 38850794 38850794 A T DNAH8 Missense_Mutation p.N2439I 0.39 benign(0.255) TCGA-AZ-6598-01 6 38893849 38893849 C - DNAH8 Frame_Shift_Del p.Q3444Rfs*16 0.21 TCGA-AZ-6598-01 6 39607482 39607482 G A KIF6 Silent p.S101S 0.34 TCGA-AZ-6598-01 6 39846260 39846260 C T DAAM2 Missense_Mutation p.R481W 0.41 deleterious(0.01) possibly_damaging(0.777) TCGA-AZ-6598-01 6 39881119 39881119 C T MOCS1 Silent p.A233A 0.45 TCGA-AZ-6598-01 6 40360116 40360116 C T LRFN2 Missense_Mutation p.A646T 0.43 tolerated(0.63) benign(0.001) TCGA-AZ-6598-01 6 41743345 41743345 T C FRS3 Splice_Site p.X23_splice 0.33 TCGA-AZ-6598-01 6 42179595 42179595 G A MRPS10 Missense_Mutation p.H83Y 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-AZ-6598-01 6 42231119 42231119 G A TRERF1 Missense_Mutation p.A608V 0.40 tolerated(0.18) possibly_damaging(0.483) TCGA-AZ-6598-01 6 43022057 43022057 G - MRPL2 Frame_Shift_Del p.M292* 0.35 TCGA-AZ-6598-01 6 43250776 43250776 G T TTBK1 Missense_Mutation p.E766D 0.19 probably_damaging(0.931) TCGA-AZ-6598-01 6 43596717 43596717 G - GTPBP2 Frame_Shift_Del p.E62Rfs*11 0.36 TCGA-AZ-6598-01 6 46047839 46047839 A G CLIC5 Silent p.Y47Y 0.40 TCGA-AZ-6598-01 6 46190804 46190804 T - RCAN2 3'UTR 0.38 TCGA-AZ-6598-01 6 46846033 46846033 G A GPR116 Silent p.C382C 0.21 TCGA-AZ-6598-01 6 4892073 4892073 T C CDYL Missense_Mutation p.Y51H 0.40 deleterious(0) probably_damaging(0.919) TCGA-AZ-6598-01 6 49660517 49660517 G T CRISP2 Missense_Mutation p.A234D 0.46 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 6 5085861 5085861 C A PPP1R3G Missense_Mutation p.P48T 0.48 tolerated(0.1) benign(0.014) TCGA-AZ-6598-01 6 51586808 51586808 C T PKHD1 Intron 0.38 TCGA-AZ-6598-01 6 51889819 51889819 C A PKHD1 Missense_Mutation p.G1597C 0.42 deleterious(0) possibly_damaging(0.726) TCGA-AZ-6598-01 6 55300342 55300342 T - HMGCLL1 3'UTR 0.40 TCGA-AZ-6598-01 6 6225023 6225023 G - F13A1 Frame_Shift_Del p.P290Hfs*72 0.35 TCGA-AZ-6598-01 6 62390696 62390696 G A KHDRBS2 3'UTR 0.44 TCGA-AZ-6598-01 6 69349186 69349186 A G BAI3 Missense_Mutation p.I207V 0.14 tolerated(0.63) benign(0.031) TCGA-AZ-6598-01 6 69666692 69666692 C T BAI3 Nonsense_Mutation p.R506* 0.35 TCGA-AZ-6598-01 6 70049376 70049376 C T BAI3 Missense_Mutation p.H1147Y 0.41 deleterious(0) probably_damaging(0.968) TCGA-AZ-6598-01 6 73830223 73830223 C T KCNQ5 Silent p.Y381Y 0.44 TCGA-AZ-6598-01 6 74325078 74325078 A T SLC17A5 Missense_Mutation p.N357K 0.46 tolerated(0.29) benign(0.008) TCGA-AZ-6598-01 6 75799986 75799986 C T COL12A1 Silent p.L2927L 0.27 TCGA-AZ-6598-01 6 75825570 75825570 C G COL12A1 Missense_Mutation p.E2543Q 0.42 benign(0.063) TCGA-AZ-6598-01 6 75855171 75855171 C T COL12A1 Missense_Mutation p.V1521M 0.35 benign(0.001) TCGA-AZ-6598-01 6 76423416 76423416 A - SENP6 Frame_Shift_Del p.G1004Efs*11 0.25 TCGA-AZ-6598-01 6 76751760 76751760 T - IMPG1 Frame_Shift_Del p.M51Cfs*7 0.27 TCGA-AZ-6598-01 6 79752673 79752673 G A PHIP Nonsense_Mutation p.R163* 0.36 TCGA-AZ-6598-01 6 80196699 80196699 A - LCA5 3'UTR 0.37 TCGA-AZ-6598-01 6 80752035 80752035 A - TTK 3'UTR 0.44 TCGA-AZ-6598-01 6 8090428 8090428 A T EEF1E1 Missense_Mutation p.H125Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-AZ-6598-01 6 82924380 82924381 - A IBTK Frame_Shift_Ins p.Q590Sfs*9 0.39 TCGA-AZ-6598-01 6 83075898 83075898 C T TPBG Missense_Mutation p.A407V 0.41 deleterious(0) possibly_damaging(0.732) TCGA-AZ-6598-01 6 83754337 83754337 C - UBE3D Frame_Shift_Del p.G136Efs*3 0.11 TCGA-AZ-6598-01 6 84870529 84870529 A G KIAA1009 Splice_Site p.X927_splice 0.18 TCGA-AZ-6598-01 6 87725557 87725557 C - HTR1E Frame_Shift_Del p.P170Lfs*26 0.30 TCGA-AZ-6598-01 6 87725847 87725847 C - HTR1E Frame_Shift_Del p.F268Sfs*5 0.35 TCGA-AZ-6598-01 6 87971035 87971037 AAG - ZNF292 In_Frame_Del p.E2566del 0.15 TCGA-AZ-6598-01 6 90385873 90385873 C T MDN1 Missense_Mutation p.R4198H 0.27 probably_damaging(0.912) TCGA-AZ-6598-01 6 96654024 96654025 - G FUT9 3'UTR 0.32 TCGA-AZ-6598-01 6 96657246 96657246 G A FUT9 3'UTR 0.35 TCGA-AZ-6598-01 6 97694520 97694520 T - MMS22L Frame_Shift_Del p.K389Sfs*10 0.10 TCGA-AZ-6598-01 6 99849343 99849343 T - PNISR Frame_Shift_Del p.E498Sfs*85 0.32 TCGA-AZ-6598-01 6 99936603 99936603 C T USP45 Missense_Mutation p.G191E 0.43 deleterious(0) probably_damaging(0.912) TCGA-AZ-6598-01 7 100463504 100463504 C - SLC12A9 Frame_Shift_Del p.R676Gfs*18 0.26 TCGA-AZ-6598-01 7 100773715 100773715 C T SERPINE1 Silent p.A95A 0.67 TCGA-AZ-6598-01 7 101870751 101870751 C - CUX1 Frame_Shift_Del p.I1092Sfs*39 0.44 TCGA-AZ-6598-01 7 102920490 102920490 G A DPY19L2P2 RNA 0.52 TCGA-AZ-6598-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.54 TCGA-AZ-6598-01 7 103969411 103969411 G A LHFPL3 Missense_Mutation p.G62S 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 7 105190859 105190859 G A RINT1 Missense_Mutation p.G420D 0.17 tolerated(0.59) benign(0.003) TCGA-AZ-6598-01 7 106509435 106509435 C T PIK3CG Missense_Mutation p.R477C 0.56 deleterious(0) possibly_damaging(0.505) TCGA-AZ-6598-01 7 106851033 106851033 G A COG5 Silent p.H802H 0.65 TCGA-AZ-6598-01 7 107115306 107115306 G T GPR22 Missense_Mutation p.E267D 0.52 tolerated(0.31) benign(0.075) TCGA-AZ-6598-01 7 107546756 107546756 A - DLD Frame_Shift_Del p.V212Ffs*12 0.30 TCGA-AZ-6598-01 7 107872889 107872889 G A NRCAM Missense_Mutation p.T103M 0.55 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 7 11022287 11022287 A - PHF14 Frame_Shift_Del p.E136Kfs*65 0.32 TCGA-AZ-6598-01 7 110765038 110765039 - A LRRN3 3'UTR 0.28 TCGA-AZ-6598-01 7 112555387 112555387 G A C7orf60 Silent p.G92G 0.56 TCGA-AZ-6598-01 7 116371857 116371857 A G MET Missense_Mutation p.I446V 0.09 tolerated(1) benign(0.014) TCGA-AZ-6598-01 7 116403174 116403174 A G MET Missense_Mutation p.Q830R 0.25 tolerated(0.25) benign(0.002) TCGA-AZ-6598-01 7 116862089 116862089 G A ST7 Silent p.P537P 0.28 TCGA-AZ-6598-01 7 123672065 123672065 G A TMEM229A Silent p.C331C 0.35 TCGA-AZ-6598-01 7 12376637 12376637 C T VWDE Nonsense_Mutation p.W1512* 0.33 TCGA-AZ-6598-01 7 126173339 126173339 G T GRM8 Silent p.T699T 0.59 TCGA-AZ-6598-01 7 127233859 127233859 G - FSCN3 5'UTR 0.65 TCGA-AZ-6598-01 7 128315872 128315872 C A FAM71F2 Silent p.T108T 0.29 TCGA-AZ-6598-01 7 128477493 128477493 G T FLNC Missense_Mutation p.E247D 0.32 tolerated(0.08) probably_damaging(0.993) TCGA-AZ-6598-01 7 128493533 128493533 C A FLNC Silent p.G2073G 0.30 TCGA-AZ-6598-01 7 128852004 128852004 C - SMO Frame_Shift_Del p.P694Lfs*82 0.30 TCGA-AZ-6598-01 7 129395139 129395139 T - NRF1 3'UTR 0.36 TCGA-AZ-6598-01 7 129520812 129520812 C T UBE2H Splice_Site p.X18_splice 0.08 TCGA-AZ-6598-01 7 131913163 131913163 T C PLXNA4 Missense_Mutation p.Q557R 0.29 tolerated(0.26) benign(0.04) TCGA-AZ-6598-01 7 133842814 133842814 C T LRGUK Silent p.L233L 0.26 TCGA-AZ-6598-01 7 133886254 133886254 A - LRGUK Frame_Shift_Del p.K591Nfs*2 0.18 TCGA-AZ-6598-01 7 133948837 133948837 C T LRGUK 3'UTR 0.48 TCGA-AZ-6598-01 7 134718925 134718925 G A AGBL3 Missense_Mutation p.V195I 0.25 tolerated(0.06) benign(0.192) TCGA-AZ-6598-01 7 134925367 134925367 C T STRA8 Missense_Mutation p.R53W 0.56 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 7 137151664 137151664 C T DGKI Intron 0.30 TCGA-AZ-6598-01 7 137206665 137206665 C T DGKI Missense_Mutation p.S732N 0.28 tolerated(0.1) benign(0.006) TCGA-AZ-6598-01 7 137266594 137266594 A G DGKI Splice_Site p.X548_splice 0.64 TCGA-AZ-6598-01 7 139281564 139281564 C T HIPK2 Silent p.R872R 0.57 TCGA-AZ-6598-01 7 13975458 13975458 C T ETV1 Silent p.T143T 0.59 TCGA-AZ-6598-01 7 140156366 140156366 C T MKRN1 Intron 0.26 TCGA-AZ-6598-01 7 140373519 140373519 G A ADCK2 Nonsense_Mutation p.W130* 0.18 TCGA-AZ-6598-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-AZ-6598-01 7 141619149 141619149 G A OR9A4 Nonsense_Mutation p.W158* 0.56 TCGA-AZ-6598-01 7 141673467 141673467 C T TAS2R38 Missense_Mutation p.R8H 0.62 deleterious_low_confidence(0.01) benign(0.002) TCGA-AZ-6598-01 7 142658027 142658027 G A KEL Missense_Mutation p.R130W 0.07 tolerated(0.16) benign(0.075) TCGA-AZ-6598-01 7 142919263 142919263 C T AC073342.1 Missense_Mutation p.S33N 0.56 benign(0) TCGA-AZ-6598-01 7 144062581 144062581 C A ARHGEF5 Missense_Mutation p.P940H 0.21 deleterious(0.04) benign(0.188) TCGA-AZ-6598-01 7 149544824 149544825 - A ZNF862 Frame_Shift_Ins p.Q84Tfs*71 0.36 TCGA-AZ-6598-01 7 150068313 150068313 T G REPIN1 Intron 0.52 TCGA-AZ-6598-01 7 150269918 150269918 C T GIMAP4 Missense_Mutation p.R254W 0.58 deleterious(0.03) possibly_damaging(0.613) TCGA-AZ-6598-01 7 150642562 150642562 G A KCNH2 Missense_Mutation p.A1124V 0.08 tolerated_low_confidence(0.12) benign(0.027) TCGA-AZ-6598-01 7 150710242 150710242 C T ATG9B 3'UTR 0.54 TCGA-AZ-6598-01 7 150831547 150831547 C T AGAP3 Missense_Mutation p.P463S 0.56 deleterious(0) probably_damaging(0.992) TCGA-AZ-6598-01 7 150937522 150937522 G A SMARCD3 Silent p.N342N 0.64 TCGA-AZ-6598-01 7 151273531 151273531 T - PRKAG2 Frame_Shift_Del p.K291Rfs*7 0.35 TCGA-AZ-6598-01 7 152549320 152549320 G A ACTR3B Missense_Mutation p.S354N 0.17 deleterious(0.02) benign(0.406) TCGA-AZ-6598-01 7 153584796 153584796 G A DPP6 Missense_Mutation p.A10T 0.46 tolerated(1) benign(0.008) TCGA-AZ-6598-01 7 15405839 15405839 C T AGMO Silent p.S361S 0.15 TCGA-AZ-6598-01 7 155174874 155174874 C T AC008060.7 Missense_Mutation p.A19V 0.06 possibly_damaging(0.691) TCGA-AZ-6598-01 7 155251034 155251034 C T EN2 5'UTR 0.10 TCGA-AZ-6598-01 7 158695164 158695164 A - WDR60 Frame_Shift_Del p.K414Rfs*22 0.12 TCGA-AZ-6598-01 7 1784981 1784981 G A ELFN1 Missense_Mutation p.C250Y 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 7 18914164 18914164 T C HDAC9 Silent p.F916F 0.58 TCGA-AZ-6598-01 7 18914211 18914211 C T HDAC9 Missense_Mutation p.T932M 0.29 deleterious(0) probably_damaging(0.982) TCGA-AZ-6598-01 7 20198752 20198752 T - MACC1 Frame_Shift_Del p.N411Tfs*23 0.40 TCGA-AZ-6598-01 7 20666218 20666218 T A ABCB5 Missense_Mutation p.V31D 0.27 deleterious(0) probably_damaging(0.929) TCGA-AZ-6598-01 7 21550700 21550700 C T SP4 Missense_Mutation p.S723F 0.56 deleterious(0) probably_damaging(0.987) TCGA-AZ-6598-01 7 2259008 2259008 C T MAD1L1 Silent p.S185S 0.62 TCGA-AZ-6598-01 7 2259040 2259040 C A MAD1L1 Missense_Mutation p.D175Y 0.21 deleterious(0.01) possibly_damaging(0.793) TCGA-AZ-6598-01 7 2317777 2317779 CTT - SNX8 In_Frame_Del p.K86del 0.16 TCGA-AZ-6598-01 7 23313915 23313915 T - GPNMB 3'UTR 0.16 TCGA-AZ-6598-01 7 24892203 24892204 TC - OSBPL3 Frame_Shift_Del p.K360Tfs*35 0.52 TCGA-AZ-6598-01 7 2638193 2638193 C - IQCE Frame_Shift_Del p.C514Afs*50 0.23 TCGA-AZ-6598-01 7 2644605 2644605 G A IQCE Missense_Mutation p.V575M 0.33 tolerated(0.53) benign(0.003) TCGA-AZ-6598-01 7 27170396 27170396 T - HOXA4 5'UTR 0.47 TCGA-AZ-6598-01 7 27809306 27809307 - A TAX1BP1 Frame_Shift_Ins p.T157Nfs*34 0.40 TCGA-AZ-6598-01 7 27824919 27824919 C T TAX1BP1 Silent p.T250T 0.25 TCGA-AZ-6598-01 7 27839636 27839636 T C TAX1BP1 Missense_Mutation p.L564P 0.30 tolerated(0.1) probably_damaging(0.986) TCGA-AZ-6598-01 7 29035303 29035303 T - CPVL 3'UTR 0.27 TCGA-AZ-6598-01 7 29186217 29186217 G T CPVL Intron 0.60 TCGA-AZ-6598-01 7 29923892 29923892 C T WIPF3 Missense_Mutation p.P261L 0.55 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-AZ-6598-01 7 30638491 30638491 G A GARS Missense_Mutation p.R101H 0.26 tolerated(0.06) benign(0.209) TCGA-AZ-6598-01 7 30693070 30693070 G A CRHR2 3'UTR 0.08 TCGA-AZ-6598-01 7 30921962 30921962 T C FAM188B Missense_Mutation p.I713T 0.58 deleterious(0) probably_damaging(0.952) TCGA-AZ-6598-01 7 35242103 35242103 C A TBX20 Missense_Mutation p.G428V 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.852) TCGA-AZ-6598-01 7 35840808 35840808 G - SEPT7 5'UTR 0.35 TCGA-AZ-6598-01 7 36336702 36336702 G A EEPD1 Silent p.A472A 0.32 TCGA-AZ-6598-01 7 36366339 36366339 G A KIAA0895 3'UTR 0.35 TCGA-AZ-6598-01 7 37946877 37946878 - A SFRP4 3'UTR 0.65 TCGA-AZ-6598-01 7 38305080 38305080 G A TRGC1 Silent p.D67D 0.59 TCGA-AZ-6598-01 7 38810819 38810820 - T VPS41 Frame_Shift_Ins p.N388Kfs*3 0.44 TCGA-AZ-6598-01 7 40132777 40132777 C T CDK13 Missense_Mutation p.S1210L 0.65 deleterious_low_confidence(0.01) possibly_damaging(0.493) TCGA-AZ-6598-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.55 TCGA-AZ-6598-01 7 4245511 4245511 C - SDK1 Frame_Shift_Del p.P1701Rfs*10 0.09 TCGA-AZ-6598-01 7 42977103 42977103 G A MRPL32 Silent p.P165P 0.59 TCGA-AZ-6598-01 7 43485092 43485092 C T HECW1 Missense_Mutation p.A774V 0.31 tolerated_low_confidence(0.39) benign(0.001) TCGA-AZ-6598-01 7 44152234 44152234 C T AEBP1 Silent p.G765G 0.08 TCGA-AZ-6598-01 7 44178494 44178494 C - MYL7 3'UTR 0.43 TCGA-AZ-6598-01 7 44619208 44619208 C T TMED4 Missense_Mutation p.R185Q 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-AZ-6598-01 7 45005839 45005839 G T MYO1G Missense_Mutation p.L664M 0.28 tolerated(0.32) probably_damaging(0.946) TCGA-AZ-6598-01 7 45726208 45726208 C T ADCY1 Missense_Mutation p.A797V 0.62 tolerated(0.06) benign(0.075) TCGA-AZ-6598-01 7 47930196 47930196 G A PKD1L1 Silent p.G873G 0.71 TCGA-AZ-6598-01 7 4800719 4800719 C T FOXK1 Missense_Mutation p.A574V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.484) TCGA-AZ-6598-01 7 48007434 48007434 T A HUS1 Silent p.G243G 0.57 TCGA-AZ-6598-01 7 4917240 4917240 C T RADIL Silent p.T177T 0.59 TCGA-AZ-6598-01 7 55500505 55500505 T C LANCL2 3'UTR 0.70 TCGA-AZ-6598-01 7 5643529 5643529 C T FSCN1 Missense_Mutation p.R383C 0.61 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 7 6063352 6063353 - T EIF2AK1 3'UTR 0.23 TCGA-AZ-6598-01 7 6449513 6449513 G A DAGLB Silent p.C658C 0.58 TCGA-AZ-6598-01 7 6620187 6620187 T C ZDHHC4 Intron 0.05 TCGA-AZ-6598-01 7 70252226 70252226 C T AUTS2 Silent p.G780G 0.29 TCGA-AZ-6598-01 7 72419270 72419270 G A POM121 3'UTR 0.47 TCGA-AZ-6598-01 7 72419300 72419300 A G POM121 3'UTR 0.12 TCGA-AZ-6598-01 7 72419361 72419361 A C POM121 3'UTR 0.09 TCGA-AZ-6598-01 7 72849810 72849810 C T FZD9 Silent p.P491P 0.58 TCGA-AZ-6598-01 7 72858393 72858393 C T BAZ1B Missense_Mutation p.R1304H 0.27 tolerated_low_confidence(0.34) benign(0) TCGA-AZ-6598-01 7 73008481 73008481 C T MLXIPL Intron 0.41 TCGA-AZ-6598-01 7 73774520 73774520 G A CLIP2 Missense_Mutation p.E411K 0.64 deleterious(0.02) probably_damaging(0.956) TCGA-AZ-6598-01 7 73790373 73790373 C T CLIP2 Missense_Mutation p.R548W 0.30 deleterious(0) possibly_damaging(0.677) TCGA-AZ-6598-01 7 74149864 74149865 - A GTF2I Frame_Shift_Ins p.F478Ifs*9 0.15 TCGA-AZ-6598-01 7 74234529 74234529 G A GTF2IRD2 Missense_Mutation p.A199V 0.60 deleterious_low_confidence(0) benign(0.241) TCGA-AZ-6598-01 7 75024727 75024727 G A TRIM73 5'Flank 0.63 TCGA-AZ-6598-01 7 75144063 75144063 G A Y_RNA 5'Flank 0.38 TCGA-AZ-6598-01 7 75634662 75634662 T C STYXL1 Missense_Mutation p.N172D 0.60 tolerated(0.35) benign(0.013) TCGA-AZ-6598-01 7 77265153 77265153 A - PTPN12 Frame_Shift_Del p.K712Sfs*5 0.21 TCGA-AZ-6598-01 7 77584361 77584361 T - PHTF2 3'UTR 0.56 TCGA-AZ-6598-01 7 77824234 77824234 T C MAGI2 Silent p.P742P 0.27 TCGA-AZ-6598-01 7 79764538 79764538 G A GNAI1 Missense_Mutation p.R21H 0.57 tolerated(0.06) benign(0.383) TCGA-AZ-6598-01 7 80301348 80301348 A G CD36 Missense_Mutation p.I373V 0.58 tolerated(1) benign(0.002) TCGA-AZ-6598-01 7 80418711 80418711 C T SEMA3C Missense_Mutation p.R422H 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6598-01 7 82072699 82072699 G A CACNA2D1 Missense_Mutation p.P26L 0.31 tolerated(0.65) benign(0.077) TCGA-AZ-6598-01 7 82579427 82579427 G A PCLO Missense_Mutation p.R3493C 0.31 unknown(0) TCGA-AZ-6598-01 7 82595777 82595777 G A PCLO Silent p.C1109C 0.27 TCGA-AZ-6598-01 7 83606456 83606456 A G SEMA3A Missense_Mutation p.L570S 0.60 tolerated(0.4) probably_damaging(0.999) TCGA-AZ-6598-01 7 86469092 86469092 C T GRM3 Silent p.Y754Y 0.58 TCGA-AZ-6598-01 7 87069126 87069127 CT - ABCB4 Frame_Shift_Del p.A531Pfs*27 0.51 TCGA-AZ-6598-01 7 87445526 87445526 C A RUNDC3B Missense_Mutation p.Q409K 0.61 tolerated(0.94) benign(0.044) TCGA-AZ-6598-01 7 89748935 89748935 C T RP5-1121E10.2 Intron 0.31 TCGA-AZ-6598-01 7 90043842 90043842 C A CLDN12 3'UTR 0.28 TCGA-AZ-6598-01 7 91503610 91503610 G T MTERF Silent p.S166S 0.37 TCGA-AZ-6598-01 7 91763825 91763825 C T CYP51A1 5'UTR 0.24 TCGA-AZ-6598-01 7 92099546 92099547 - G ERVW-1 Frame_Shift_Ins p.S51Ifs*3 0.15 TCGA-AZ-6598-01 7 92146844 92146844 T C PEX1 Missense_Mutation p.T329A 0.14 tolerated(0.32) benign(0.009) TCGA-AZ-6598-01 7 92161827 92161827 C T RBM48 Missense_Mutation p.R138W 0.10 deleterious(0) probably_damaging(0.983) TCGA-AZ-6598-01 7 92763292 92763292 T C SAMD9L Missense_Mutation p.T665A 0.62 tolerated(0.05) benign(0) TCGA-AZ-6598-01 7 92763408 92763408 G A SAMD9L Missense_Mutation p.S626L 0.29 deleterious(0) possibly_damaging(0.883) TCGA-AZ-6598-01 7 92887484 92887484 G A CCDC132 Missense_Mutation p.A146T 0.57 tolerated(0.08) benign(0.16) TCGA-AZ-6598-01 7 93055835 93055835 G A CALCR Missense_Mutation p.R454C 0.51 tolerated(0.07) possibly_damaging(0.802) TCGA-AZ-6598-01 7 95775880 95775880 A - SLC25A13 Frame_Shift_Del p.F481Lfs*28 0.21 TCGA-AZ-6598-01 7 96339177 96339177 G A SHFM1 5'UTR 0.38 TCGA-AZ-6598-01 7 97842122 97842122 G A BHLHA15 Silent p.T167T 0.12 TCGA-AZ-6598-01 7 98449202 98449202 G A TMEM130 Missense_Mutation p.P283L 0.63 deleterious(0.01) possibly_damaging(0.794) TCGA-AZ-6598-01 7 98649911 98649911 C T SMURF1 Missense_Mutation p.R213Q 0.29 tolerated(0.27) possibly_damaging(0.86) TCGA-AZ-6598-01 7 99091800 99091800 A - ZNF394 Frame_Shift_Del p.F346Lfs*56 0.25 TCGA-AZ-6598-01 7 99695504 99695504 T G MCM7 Missense_Mutation p.E313A 0.26 tolerated(0.9) benign(0.002) TCGA-AZ-6598-01 7 99796189 99796189 G A STAG3 Missense_Mutation p.E446K 0.56 deleterious(0) possibly_damaging(0.817) TCGA-AZ-6598-01 8 101014478 101014478 T - RGS22 Frame_Shift_Del p.K914Nfs*18 0.25 TCGA-AZ-6598-01 8 101715472 101715472 T - PABPC1 3'UTR 0.20 TCGA-AZ-6598-01 8 103274272 103274272 A - UBR5 Frame_Shift_Del p.F2571Lfs*4 0.23 TCGA-AZ-6598-01 8 103297374 103297374 G A UBR5 Nonsense_Mutation p.R1893* 0.27 TCGA-AZ-6598-01 8 103664091 103664091 G A KLF10 Missense_Mutation p.R157C 0.24 deleterious(0.01) probably_damaging(1) TCGA-AZ-6598-01 8 103855848 103855848 G A AZIN1 Silent p.S11S 0.33 TCGA-AZ-6598-01 8 104427515 104427515 C T DCAF13 Silent p.Y99Y 0.33 TCGA-AZ-6598-01 8 10470053 10470053 C T RP1L1 Missense_Mutation p.G519S 0.24 benign(0.166) TCGA-AZ-6598-01 8 104898242 104898242 A - RIMS2 Frame_Shift_Del p.M474Wfs*5 0.21 TCGA-AZ-6598-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.23 TCGA-AZ-6598-01 8 109796582 109796582 A G TMEM74 Missense_Mutation p.L249S 0.42 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 8 109796710 109796710 G A TMEM74 Silent p.P206P 0.29 TCGA-AZ-6598-01 8 110355849 110355849 T - ENY2 3'UTR 0.31 TCGA-AZ-6598-01 8 110450565 110450565 A G PKHD1L1 Missense_Mutation p.T1214A 0.29 tolerated(0.18) benign(0.422) TCGA-AZ-6598-01 8 11174439 11174439 C T MTMR9 Intron 0.37 TCGA-AZ-6598-01 8 117875402 117875402 C A RAD21 Missense_Mutation p.A81S 0.31 deleterious(0.04) probably_damaging(0.944) TCGA-AZ-6598-01 8 118819569 118819569 C T EXT1 Silent p.V590V 0.35 TCGA-AZ-6598-01 8 11995870 11995874 ATGTG - USP17L2 Frame_Shift_Del p.I132Mfs*22 0.17 TCGA-AZ-6598-01 8 121463519 121463521 GAA - MTBP In_Frame_Del p.E130del 0.32 TCGA-AZ-6598-01 8 121473434 121473434 G A MTBP Missense_Mutation p.V306M 0.08 deleterious(0.04) probably_damaging(0.972) TCGA-AZ-6598-01 8 121483070 121483070 T - MTBP Frame_Shift_Del p.F354Lfs*11 0.19 TCGA-AZ-6598-01 8 124335286 124335286 A T ATAD2 Silent p.V1341V 0.14 TCGA-AZ-6598-01 8 124429134 124429134 C - WDYHV1 Frame_Shift_Del p.P17Rfs*31 0.30 TCGA-AZ-6598-01 8 124822627 124822627 C A FAM91A1 Intron 0.30 TCGA-AZ-6598-01 8 12580761 12580761 T C LONRF1 Silent p.A722A 0.23 TCGA-AZ-6598-01 8 12863765 12863765 G C KIAA1456 Missense_Mutation p.E18D 0.12 tolerated(0.14) benign(0.425) TCGA-AZ-6598-01 8 12870276 12870276 G A KIAA1456 Missense_Mutation p.A80T 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 8 12886260 12886260 T - KIAA1456 3'UTR 0.29 TCGA-AZ-6598-01 8 12957144 12957144 T C DLC1 Missense_Mutation p.D901G 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-AZ-6598-01 8 130861609 130861609 G A FAM49B Silent p.Y240Y 0.19 TCGA-AZ-6598-01 8 132051646 132051646 G A ADCY8 Missense_Mutation p.R312W 0.25 tolerated(0.17) possibly_damaging(0.657) TCGA-AZ-6598-01 8 132051943 132051943 C A ADCY8 Missense_Mutation p.G213C 0.32 deleterious(0.02) probably_damaging(0.936) TCGA-AZ-6598-01 8 133823336 133823336 A G PHF20L1 Missense_Mutation p.K298R 0.26 deleterious_low_confidence(0.02) benign(0.042) TCGA-AZ-6598-01 8 140743438 140743438 C - TRAPPC9 Frame_Shift_Del p.A1203Pfs*127 0.26 TCGA-AZ-6598-01 8 140744339 140744339 G A TRAPPC9 Silent p.S1152S 0.43 TCGA-AZ-6598-01 8 141542517 141542517 G A AGO2 Silent p.D823D 0.38 TCGA-AZ-6598-01 8 142487544 142487544 C T MROH5 3'UTR 0.28 TCGA-AZ-6598-01 8 142488811 142488811 C A MROH5 3'UTR 0.30 TCGA-AZ-6598-01 8 143602183 143602183 G T BAI1 Splice_Site p.X974_splice 0.29 TCGA-AZ-6598-01 8 143747581 143747581 C T JRK RNA 0.16 TCGA-AZ-6598-01 8 143816995 143816995 C - THEM6 3'UTR 0.38 TCGA-AZ-6598-01 8 143823323 143823323 A G SLURP1 Missense_Mutation p.Y26H 0.25 deleterious(0) probably_damaging(0.913) TCGA-AZ-6598-01 8 143922606 143922606 C T GML Missense_Mutation p.P49L 0.29 tolerated(0.23) benign(0.073) TCGA-AZ-6598-01 8 144332237 144332237 T G ZFP41 Missense_Mutation p.V75G 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-6598-01 8 144463885 144463885 C T RHPN1 Silent p.A544A 0.33 TCGA-AZ-6598-01 8 144464048 144464048 G T RHPN1 Silent p.A569A 0.25 TCGA-AZ-6598-01 8 144550696 144550696 C T ZC3H3 Missense_Mutation p.R654H 0.32 deleterious(0) probably_damaging(0.939) TCGA-AZ-6598-01 8 144732474 144732474 G A ZNF623 Silent p.S144S 0.26 TCGA-AZ-6598-01 8 144919271 144919271 C T NRBP2 Silent p.P401P 0.09 TCGA-AZ-6598-01 8 144941681 144941681 T C EPPK1 Missense_Mutation p.H1914R 0.26 benign(0.089) TCGA-AZ-6598-01 8 144946586 144946586 C T EPPK1 Missense_Mutation p.R279H 0.14 benign(0.004) TCGA-AZ-6598-01 8 144995514 144995514 G A PLEC Silent p.P2962P 0.17 TCGA-AZ-6598-01 8 145111332 145111332 C T OPLAH Missense_Mutation p.E647K 0.37 tolerated(0.25) benign(0.002) TCGA-AZ-6598-01 8 145135356 145135356 C T EXOSC4 Missense_Mutation p.A197V 0.24 tolerated(1) benign(0.014) TCGA-AZ-6598-01 8 145161278 145161278 A G MAF1 Silent p.S137S 0.32 TCGA-AZ-6598-01 8 145245696 145245696 G A MROH1 Missense_Mutation p.R191H 0.34 tolerated(1) benign(0.002) TCGA-AZ-6598-01 8 145542011 145542011 C T DGAT1 Missense_Mutation p.A197T 0.26 tolerated(0.16) benign(0.163) TCGA-AZ-6598-01 8 145584313 145584313 G A SLC52A2 Silent p.A355A 0.25 TCGA-AZ-6598-01 8 145618785 145618785 C T CPSF1 Missense_Mutation p.R1389H 0.35 tolerated(0.06) probably_damaging(0.96) TCGA-AZ-6598-01 8 145619158 145619158 C - CPSF1 Frame_Shift_Del p.A1319Pfs*42 0.29 TCGA-AZ-6598-01 8 145741892 145741892 G C RECQL4 Missense_Mutation p.A204G 0.26 tolerated(0.12) benign(0.022) TCGA-AZ-6598-01 8 146067177 146067178 - A ZNF7 Frame_Shift_Ins p.L232Vfs*3 0.16 TCGA-AZ-6598-01 8 17143899 17143899 C T VPS37A Missense_Mutation p.A386V 0.22 tolerated(0.61) benign(0.001) TCGA-AZ-6598-01 8 17579221 17579221 T - MTUS1 Intron 0.21 TCGA-AZ-6598-01 8 17612417 17612417 T - MTUS1 Frame_Shift_Del p.V301Sfs*37 0.16 TCGA-AZ-6598-01 8 17849178 17849178 T C PCM1 Silent p.A1553A 0.16 TCGA-AZ-6598-01 8 19363220 19363220 C T CSGALNACT1 Silent p.Q42Q 0.27 TCGA-AZ-6598-01 8 19809309 19809309 A - LPL Frame_Shift_Del p.K94Nfs*78 0.23 TCGA-AZ-6598-01 8 20110557 20110557 G A LZTS1 Silent p.Y295Y 0.29 TCGA-AZ-6598-01 8 21926994 21926994 C - DMTN Frame_Shift_Del p.R122Gfs*109 0.24 TCGA-AZ-6598-01 8 22023012 22023012 C A BMP1 Missense_Mutation p.L32M 0.41 tolerated_low_confidence(0.22) benign(0.227) TCGA-AZ-6598-01 8 22052315 22052315 C T BMP1 Missense_Mutation p.R508C 0.14 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-6598-01 8 22058717 22058717 G T BMP1 Intron 0.26 TCGA-AZ-6598-01 8 22168655 22168655 C A PIWIL2 Missense_Mutation p.P611T 0.12 tolerated(0.37) benign(0.006) TCGA-AZ-6598-01 8 22477178 22477178 C T CCAR2 Missense_Mutation p.P919S 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.635) TCGA-AZ-6598-01 8 22548636 22548636 A G EGR3 Missense_Mutation p.S172P 0.27 tolerated(1) benign(0.013) TCGA-AZ-6598-01 8 22864596 22864597 - C RHOBTB2 Frame_Shift_Ins p.H303Pfs*14 0.26 TCGA-AZ-6598-01 8 22974597 22974597 G A TNFRSF10C 3'UTR 0.40 TCGA-AZ-6598-01 8 23115942 23115942 G A CHMP7 Missense_Mutation p.A314T 0.21 tolerated(0.45) benign(0.312) TCGA-AZ-6598-01 8 23167365 23167365 G A LOXL2 Missense_Mutation p.R566W 0.21 deleterious(0.02) probably_damaging(1) TCGA-AZ-6598-01 8 23217702 23217702 G A LOXL2 Silent p.G144G 0.30 TCGA-AZ-6598-01 8 23290455 23290455 G A ENTPD4 Missense_Mutation p.A612V 0.17 tolerated_low_confidence(0.47) benign(0) TCGA-AZ-6598-01 8 24813285 24813285 C T CTD-2168K21.2 5'Flank 0.30 TCGA-AZ-6598-01 8 24813469 24813469 G A CTD-2168K21.2 5'Flank 0.34 TCGA-AZ-6598-01 8 25364716 25364716 A - CDCA2 Frame_Shift_Del p.N847Mfs*14 0.10 TCGA-AZ-6598-01 8 26501002 26501002 G A DPYSL2 Missense_Mutation p.G287S 0.32 deleterious(0.02) probably_damaging(0.954) TCGA-AZ-6598-01 8 27145213 27145213 G A TRIM35 Missense_Mutation p.R446C 0.30 tolerated(0.08) benign(0.024) TCGA-AZ-6598-01 8 27303389 27303389 A G PTK2B Missense_Mutation p.T765A 0.20 tolerated(0.35) benign(0.017) TCGA-AZ-6598-01 8 27779225 27779225 C T SCARA5 Missense_Mutation p.R260H 0.39 deleterious(0.02) probably_damaging(0.964) TCGA-AZ-6598-01 8 27989921 27989924 AGTA - ELP3 Splice_Site p.X302_splice 0.21 TCGA-AZ-6598-01 8 28206240 28206240 T C ZNF395 Missense_Mutation p.D513G 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 8 28286195 28286195 G - FBXO16 3'UTR 0.31 TCGA-AZ-6598-01 8 29921333 29921333 T - TMEM66 3'UTR 0.17 TCGA-AZ-6598-01 8 30210439 30210439 C T TUBBP1 RNA 0.32 TCGA-AZ-6598-01 8 3224579 3224579 G A CSMD1 Silent p.Y1030Y 0.59 TCGA-AZ-6598-01 8 32453511 32453511 A - NRG1 Frame_Shift_Del p.K91Sfs*24 0.13 TCGA-AZ-6598-01 8 37704585 37704585 G A BRF2 Missense_Mutation p.A108V 0.25 tolerated(0.3) benign(0.03) TCGA-AZ-6598-01 8 37720397 37720397 T - RAB11FIP1 3'UTR 0.31 TCGA-AZ-6598-01 8 37729272 37729272 G A RAB11FIP1 Silent p.G1016G 0.22 TCGA-AZ-6598-01 8 37824007 37824007 C T ADRB3 5'UTR 0.40 TCGA-AZ-6598-01 8 38148122 38148122 C - WHSC1L1 Frame_Shift_Del p.D997Tfs*55 0.20 TCGA-AZ-6598-01 8 38876424 38876424 T C ADAM9 Missense_Mutation p.V220A 0.34 tolerated(0.06) possibly_damaging(0.868) TCGA-AZ-6598-01 8 41550183 41550183 G A ANK1 Missense_Mutation p.R1322W 0.35 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 8 41553955 41553955 C T ANK1 Silent p.P1003P 0.33 TCGA-AZ-6598-01 8 41566383 41566383 C T ANK1 Silent p.T670T 0.08 TCGA-AZ-6598-01 8 41575635 41575635 C T ANK1 Missense_Mutation p.A432T 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 8 41581140 41581140 C T ANK1 Silent p.T274T 0.30 TCGA-AZ-6598-01 8 42693100 42693100 T - THAP1 3'UTR 0.13 TCGA-AZ-6598-01 8 42873634 42873634 C T HOOK3 Missense_Mutation p.A717V 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-AZ-6598-01 8 4851879 4851879 G A CSMD1 Silent p.C20C 0.32 TCGA-AZ-6598-01 8 49986797 49986797 G A C8orf22 Silent p.L46L 0.25 TCGA-AZ-6598-01 8 51314775 51314775 G T SNTG1 Missense_Mutation p.K11N 0.24 deleterious(0) probably_damaging(0.986) TCGA-AZ-6598-01 8 52321434 52321434 C T PXDNL Missense_Mutation p.R917Q 0.18 tolerated(0.2) benign(0.393) TCGA-AZ-6598-01 8 53569773 53569774 - T RB1CC1 Frame_Shift_Ins p.N872Kfs*2 0.24 TCGA-AZ-6598-01 8 53852765 53852765 C T NPBWR1 Missense_Mutation p.R100W 0.30 deleterious(0.01) possibly_damaging(0.638) TCGA-AZ-6598-01 8 55534129 55534129 G A RP1 Silent p.T201T 0.27 TCGA-AZ-6598-01 8 56863054 56863054 A - LYN Frame_Shift_Del p.E110Kfs*15 0.10 TCGA-AZ-6598-01 8 57026417 57026417 C T MOS Missense_Mutation p.R42Q 0.29 tolerated(0.05) probably_damaging(0.996) TCGA-AZ-6598-01 8 57354194 57354194 G C PENK Missense_Mutation p.D147E 0.33 tolerated(0.36) benign(0.006) TCGA-AZ-6598-01 8 61693840 61693840 A - CHD7 Frame_Shift_Del p.D652Tfs*59 0.23 TCGA-AZ-6598-01 8 623501 623501 C T ERICH1 Missense_Mutation p.R284Q 0.29 tolerated(0.62) benign(0.003) TCGA-AZ-6598-01 8 623895 623895 C T ERICH1 Missense_Mutation p.D153N 0.28 deleterious(0.04) probably_damaging(0.983) TCGA-AZ-6598-01 8 62412295 62412295 T - CLVS1 3'UTR 0.30 TCGA-AZ-6598-01 8 642534 642534 G A ERICH1 Missense_Mutation p.P83L 0.28 tolerated(0.05) benign(0.13) TCGA-AZ-6598-01 8 67831262 67831262 C T MCMDC2 Missense_Mutation p.P635L 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-AZ-6598-01 8 67929882 67929882 T A PPP1R42 Missense_Mutation p.N34I 0.25 tolerated(0.1) possibly_damaging(0.476) TCGA-AZ-6598-01 8 68128856 68128856 G - ARFGEF1 Frame_Shift_Del p.P1552Hfs*6 0.35 TCGA-AZ-6598-01 8 68658485 68658485 G T CPA6 5'UTR 0.36 TCGA-AZ-6598-01 8 69445283 69445283 C T C8orf34 Missense_Mutation p.A335V 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 8 70515484 70515484 G A SULF1 Silent p.G373G 0.31 TCGA-AZ-6598-01 8 71068453 71068453 C T NCOA2 Missense_Mutation p.S716N 0.30 tolerated(0.45) benign(0) TCGA-AZ-6598-01 8 71487027 71487027 A - TRAM1 3'UTR 0.29 TCGA-AZ-6598-01 8 72756051 72756051 G A MSC Silent p.R121R 0.32 TCGA-AZ-6598-01 8 72756484 72756484 G A RP11-383H13.1 Silent p.P108P 0.33 TCGA-AZ-6598-01 8 73480204 73480204 G A KCNB2 Missense_Mutation p.D79N 0.30 deleterious(0) probably_damaging(0.979) TCGA-AZ-6598-01 8 75233524 75233525 - G JPH1 5'UTR 0.18 TCGA-AZ-6598-01 8 75737663 75737663 G A PI15 Missense_Mutation p.R60H 0.63 deleterious(0.01) probably_damaging(0.996) TCGA-AZ-6598-01 8 77618007 77618007 G A ZFHX4 Missense_Mutation p.A562T 0.25 benign(0.003) TCGA-AZ-6598-01 8 77895991 77895992 - A PEX2 Frame_Shift_Ins p.V142Cfs*12 0.22 TCGA-AZ-6598-01 8 79510747 79510747 C A PKIA Missense_Mutation p.A43E 0.23 deleterious(0) benign(0.225) TCGA-AZ-6598-01 8 82357140 82357140 C T PMP2 Missense_Mutation p.R53Q 0.36 tolerated(0.06) benign(0.015) TCGA-AZ-6598-01 8 82644806 82644806 C - CHMP4C 5'UTR 0.37 TCGA-AZ-6598-01 8 86019547 86019547 C T LRRCC1 Missense_Mutation p.A6V 0.28 tolerated_low_confidence(0.3) unknown(0) TCGA-AZ-6598-01 8 86354317 86354317 C A CA3 Missense_Mutation p.P83H 0.21 deleterious(0) probably_damaging(0.969) TCGA-AZ-6598-01 8 87424060 87424060 C T WWP1 Missense_Mutation p.R340W 0.27 deleterious(0.02) possibly_damaging(0.487) TCGA-AZ-6598-01 8 89068424 89068424 G T MMP16 Silent p.P435P 0.32 TCGA-AZ-6598-01 8 90949292 90949292 T C NBN Silent p.Q732Q 0.13 TCGA-AZ-6598-01 8 91962087 91962087 T C NECAB1 Missense_Mutation p.W305R 0.08 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 8 94713559 94713559 G T FAM92A1 Missense_Mutation p.R45I 0.32 deleterious(0) probably_damaging(0.992) TCGA-AZ-6598-01 8 94828758 94828758 T - TMEM67 3'UTR 0.22 TCGA-AZ-6598-01 8 97307442 97307442 C T PTDSS1 Silent p.Y186Y 0.30 TCGA-AZ-6598-01 8 97506377 97506377 G A SDC2 5'UTR 0.33 TCGA-AZ-6598-01 8 99118514 99118514 C T HRSP12 Missense_Mutation p.C71Y 0.30 tolerated(0.09) benign(0.135) TCGA-AZ-6598-01 8 99468131 99468131 G A STK3 Missense_Mutation p.A500V 0.26 tolerated(0.13) benign(0.298) TCGA-AZ-6598-01 9 100125964 100125964 C T CCDC180 Intron 0.36 TCGA-AZ-6598-01 9 100331209 100331209 T C TMOD1 Silent p.L254L 0.35 TCGA-AZ-6598-01 9 100433488 100433488 T - NCBP1 3'UTR 0.25 TCGA-AZ-6598-01 9 100849700 100849700 C T TRIM14 3'UTR 0.39 TCGA-AZ-6598-01 9 101540549 101540549 C T ANKS6 Missense_Mutation p.R509H 0.34 tolerated(0.43) benign(0.001) TCGA-AZ-6598-01 9 101540693 101540693 C T ANKS6 Missense_Mutation p.R461Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-AZ-6598-01 9 101990236 101990236 G - SEC61B Frame_Shift_Del p.M55Cfs*22 0.34 TCGA-AZ-6598-01 9 102677512 102677512 T - STX17 5'UTR 0.26 TCGA-AZ-6598-01 9 103046776 103046776 T A INVS Silent p.P653P 0.08 TCGA-AZ-6598-01 9 103060227 103060227 A G INVS Missense_Mutation p.H1009R 0.47 deleterious_low_confidence(0.02) benign(0.012) TCGA-AZ-6598-01 9 103090210 103090210 C T TEX10 Missense_Mutation p.G554S 0.33 tolerated(0.6) benign(0.034) TCGA-AZ-6598-01 9 104239080 104239080 G - TMEM246 Frame_Shift_Del p.R99Gfs*5 0.34 TCGA-AZ-6598-01 9 104335263 104335263 C T GRIN3A 3'UTR 0.71 TCGA-AZ-6598-01 9 106864825 106864825 C T SMC2 Missense_Mutation p.R331C 0.40 tolerated(0.18) benign(0.035) TCGA-AZ-6598-01 9 107457697 107457697 C T OR13D1 Missense_Mutation p.A332V 0.31 deleterious(0) benign(0.117) TCGA-AZ-6598-01 9 107593905 107593905 A G ABCA1 Silent p.D571D 0.13 TCGA-AZ-6598-01 9 111665142 111665142 C T IKBKAP Missense_Mutation p.E611K 0.37 tolerated(0.3) possibly_damaging(0.512) TCGA-AZ-6598-01 9 111665841 111665841 A G IKBKAP Splice_Site p.X584_splice 0.30 TCGA-AZ-6598-01 9 111745534 111745534 C T CTNNAL1 Missense_Mutation p.R264H 0.43 deleterious(0.04) probably_damaging(1) TCGA-AZ-6598-01 9 113173392 113173392 T C SVEP1 Missense_Mutation p.H2200R 0.36 probably_damaging(0.968) TCGA-AZ-6598-01 9 113220752 113220752 T C SVEP1 Missense_Mutation p.Q1192R 0.28 benign(0.011) TCGA-AZ-6598-01 9 113261341 113261341 A G SVEP1 Missense_Mutation p.V554A 0.38 benign(0.002) TCGA-AZ-6598-01 9 114184213 114184213 C T KIAA0368 Silent p.S659S 0.33 TCGA-AZ-6598-01 9 115983508 115983508 C - FKBP15 Frame_Shift_Del p.D6Tfs*64 0.13 TCGA-AZ-6598-01 9 117052378 117052378 G A COL27A1 Missense_Mutation p.R1416Q 0.39 unknown(0) TCGA-AZ-6598-01 9 117052517 117052517 T C COL27A1 Missense_Mutation p.L1425P 0.41 unknown(0) TCGA-AZ-6598-01 9 117052593 117052593 C T COL27A1 Silent p.D1450D 0.42 TCGA-AZ-6598-01 9 117054417 117054417 C A COL27A1 Missense_Mutation p.P1504H 0.10 unknown(0) TCGA-AZ-6598-01 9 117836056 117836056 G A TNC Missense_Mutation p.R1014C 0.38 tolerated(0.11) possibly_damaging(0.893) TCGA-AZ-6598-01 9 117848768 117848768 G A TNC Silent p.G414G 0.41 TCGA-AZ-6598-01 9 123165246 123165246 G A CDK5RAP2 Silent p.G1715G 0.38 TCGA-AZ-6598-01 9 123586946 123586947 - A PSMD5 Frame_Shift_Ins p.G278Wfs*8 0.28 TCGA-AZ-6598-01 9 123675728 123675728 G A TRAF1 Missense_Mutation p.R195C 0.43 tolerated(0.19) benign(0.004) TCGA-AZ-6598-01 9 125289099 125289099 C T OR1N1 Silent p.T158T 0.42 TCGA-AZ-6598-01 9 125330016 125330016 G A OR1L8 Silent p.T247T 0.45 TCGA-AZ-6598-01 9 126133700 126133700 G A CRB2 Missense_Mutation p.G760D 0.10 deleterious(0) probably_damaging(0.931) TCGA-AZ-6598-01 9 126139123 126139123 C A CRB2 Missense_Mutation p.L1214M 0.43 tolerated(0.11) possibly_damaging(0.888) TCGA-AZ-6598-01 9 127265418 127265418 G A NR5A1 Missense_Mutation p.R62C 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 9 127572368 127572368 G A OLFML2A Missense_Mutation p.E546K 0.50 deleterious(0) possibly_damaging(0.635) TCGA-AZ-6598-01 9 12821427 12821427 C A LURAP1L Missense_Mutation p.L119I 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-AZ-6598-01 9 130440725 130440725 C T STXBP1 Missense_Mutation p.R459W 0.47 tolerated(0.16) possibly_damaging(0.491) TCGA-AZ-6598-01 9 130502021 130502021 C T SH2D3C Missense_Mutation p.A783T 0.44 deleterious(0) possibly_damaging(0.894) TCGA-AZ-6598-01 9 130572347 130572347 G A FPGS Missense_Mutation p.G417R 0.41 tolerated(0.06) possibly_damaging(0.886) TCGA-AZ-6598-01 9 130656817 130656817 C T ST6GALNAC6 Missense_Mutation p.G91S 0.52 benign(0.12) TCGA-AZ-6598-01 9 130869358 130869358 C T SLC25A25 Silent p.P409P 0.42 TCGA-AZ-6598-01 9 130928673 130928673 C T CIZ1 Missense_Mutation p.A834T 0.07 tolerated(0.1) benign(0.02) TCGA-AZ-6598-01 9 130947879 130947879 G A CIZ1 Missense_Mutation p.R179W 0.22 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 9 131378098 131378098 A G SPTAN1 Missense_Mutation p.D1779G 0.42 deleterious(0.02) possibly_damaging(0.859) TCGA-AZ-6598-01 9 131584868 131584868 C A ENDOG Silent p.A291A 0.37 TCGA-AZ-6598-01 9 131708922 131708922 C - DOLK Frame_Shift_Del p.D221Tfs*11 0.29 TCGA-AZ-6598-01 9 131851408 131851408 T - DOLPP1 3'UTR 0.31 TCGA-AZ-6598-01 9 132396561 132396561 G A NTMT1 Missense_Mutation p.V131M 0.44 deleterious(0) probably_damaging(0.952) TCGA-AZ-6598-01 9 134454888 134454888 G C RAPGEF1 Missense_Mutation p.T1095S 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.508) TCGA-AZ-6598-01 9 134952870 134952872 GAG - MED27 In_Frame_Del p.P102del 0.12 TCGA-AZ-6598-01 9 135140350 135140350 A G SETX Missense_Mutation p.L2437P 0.20 deleterious(0) probably_damaging(0.999) TCGA-AZ-6598-01 9 135201742 135201742 A - SETX Frame_Shift_Del p.F1748Sfs*3 0.37 TCGA-AZ-6598-01 9 135205041 135205041 T C SETX Silent p.E648E 0.29 TCGA-AZ-6598-01 9 135947065 135947065 C - CEL Frame_Shift_Del p.T731Rfs*30 0.34 TCGA-AZ-6598-01 9 137313646 137313646 G A RXRA Missense_Mutation p.R302Q 0.52 tolerated(0.08) probably_damaging(0.936) TCGA-AZ-6598-01 9 137657581 137657581 G A COL5A1 Splice_Site p.X696_splice 0.37 TCGA-AZ-6598-01 9 138011794 138011794 G A OLFM1 Missense_Mutation p.G392S 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-AZ-6598-01 9 138379011 138379011 G A PPP1R26 Silent p.P885P 0.54 TCGA-AZ-6598-01 9 138395617 138395617 A T MRPS2 Missense_Mutation p.T177S 0.27 deleterious(0.04) probably_damaging(0.934) TCGA-AZ-6598-01 9 138903746 138903746 C T NACC2 Silent p.P460P 0.41 TCGA-AZ-6598-01 9 139235468 139235468 G - GPSM1 Intron 0.36 TCGA-AZ-6598-01 9 139301600 139301600 G C SDCCAG3 Missense_Mutation p.D272E 0.29 tolerated(1) benign(0.001) TCGA-AZ-6598-01 9 139313298 139313298 C T PMPCA Silent p.N376N 0.49 TCGA-AZ-6598-01 9 139329257 139329257 C T INPP5E Missense_Mutation p.A291T 0.22 tolerated(0.5) benign(0.002) TCGA-AZ-6598-01 9 139342831 139342831 G - SEC16A Intron 0.45 TCGA-AZ-6598-01 9 139390832 139390832 C T NOTCH1 Silent p.V2453V 0.53 TCGA-AZ-6598-01 9 139407503 139407504 - C NOTCH1 Frame_Shift_Ins p.Y813Vfs*15 0.07 TCGA-AZ-6598-01 9 139749738 139749738 C T MAMDC4 Silent p.G410G 0.33 TCGA-AZ-6598-01 9 139757424 139757424 C T EDF1 Missense_Mutation p.A107T 0.07 tolerated(0.65) benign(0.029) TCGA-AZ-6598-01 9 139889217 139889217 C T CLIC3 Silent p.A209A 0.43 TCGA-AZ-6598-01 9 139907368 139907368 G A ABCA2 Missense_Mutation p.T1626M 0.50 deleterious(0.01) benign(0.084) TCGA-AZ-6598-01 9 139935638 139935638 G A NPDC1 Silent p.G87G 0.42 TCGA-AZ-6598-01 9 139946783 139946783 G A ENTPD2 Silent p.D45D 0.45 TCGA-AZ-6598-01 9 139995548 139995548 G - MAN1B1 Frame_Shift_Del p.L339Sfs*2 0.33 TCGA-AZ-6598-01 9 140325730 140325730 C - NOXA1 Frame_Shift_Del p.L249Sfs*66 0.38 TCGA-AZ-6598-01 9 140510182 140510182 G A C9orf37 Missense_Mutation p.A157V 0.38 deleterious_low_confidence(0.02) benign(0) TCGA-AZ-6598-01 9 140672433 140672433 G A EHMT1 Silent p.R706R 0.50 TCGA-AZ-6598-01 9 140732961 140732961 C - EHMT1 3'Flank 0.36 TCGA-AZ-6598-01 9 140773562 140773562 T C CACNA1B Missense_Mutation p.L114P 0.31 deleterious(0) benign(0.127) TCGA-AZ-6598-01 9 14088154 14088154 A T NFIB 3'UTR 0.50 TCGA-AZ-6598-01 9 141044697 141044697 G A TUBBP5 RNA 0.50 TCGA-AZ-6598-01 9 14842538 14842538 C T FREM1 Missense_Mutation p.S505N 0.10 deleterious(0.02) benign(0.078) TCGA-AZ-6598-01 9 15744459 15744459 C T CCDC171 Silent p.C746C 0.41 TCGA-AZ-6598-01 9 16435787 16435787 G T BNC2 Missense_Mutation p.A802D 0.54 tolerated(0.29) probably_damaging(0.942) TCGA-AZ-6598-01 9 17135399 17135399 A - CNTLN Frame_Shift_Del p.K113Rfs*51 0.32 TCGA-AZ-6598-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.08 TCGA-AZ-6598-01 9 18777843 18777843 G A ADAMTSL1 Missense_Mutation p.G1206S 0.47 tolerated(0.08) probably_damaging(1) TCGA-AZ-6598-01 9 19049684 19049684 G A RRAGA Silent p.K9K 0.41 TCGA-AZ-6598-01 9 19516126 19516126 C T SLC24A2 3'UTR 0.07 TCGA-AZ-6598-01 9 20414328 20414328 G A MLLT3 Silent p.S172S 0.30 TCGA-AZ-6598-01 9 2083395 2083395 G A SMARCA2 Silent p.V799V 0.34 TCGA-AZ-6598-01 9 20862590 20862590 G A FOCAD Missense_Mutation p.R645H 0.42 tolerated(0.57) benign(0.149) TCGA-AZ-6598-01 9 20907177 20907177 G A FOCAD Missense_Mutation p.R885H 0.39 tolerated(0.06) benign(0.04) TCGA-AZ-6598-01 9 20982431 20982431 G A FOCAD Missense_Mutation p.A1572T 0.35 tolerated(1) benign(0.002) TCGA-AZ-6598-01 9 21077644 21077644 G A IFNB1 Silent p.D75D 0.49 TCGA-AZ-6598-01 9 21481034 21481034 A G IFNE 3'UTR 0.22 TCGA-AZ-6598-01 9 2651933 2651933 G A VLDLR Missense_Mutation p.A799T 0.45 tolerated(0.48) benign(0.356) TCGA-AZ-6598-01 9 27197554 27197554 G - TEK Frame_Shift_Del p.E624Nfs*33 0.28 TCGA-AZ-6598-01 9 27455632 27455632 T - MOB3B 5'UTR 0.21 TCGA-AZ-6598-01 9 27548165 27548166 - C C9orf72 3'UTR 0.30 TCGA-AZ-6598-01 9 32418469 32418469 G A ACO1 Silent p.S206S 0.42 TCGA-AZ-6598-01 9 32989882 32989882 C T APTX Missense_Mutation p.R3Q 0.41 tolerated(0.23) benign(0.007) TCGA-AZ-6598-01 9 33038827 33038827 C T DNAJA1 Missense_Mutation p.R374C 0.41 deleterious(0.04) benign(0) TCGA-AZ-6598-01 9 33675326 33675326 T C PTENP1 RNA 0.18 TCGA-AZ-6598-01 9 34568931 34568931 C T CNTFR Missense_Mutation p.A17T 0.36 tolerated(0.38) unknown(0) TCGA-AZ-6598-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.30 TCGA-AZ-6598-01 9 35380501 35380501 C T UNC13B Missense_Mutation p.R665C 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 9 35396599 35396599 C T UNC13B Missense_Mutation p.A1063V 0.36 tolerated(0.08) benign(0.296) TCGA-AZ-6598-01 9 35712971 35712971 A G TLN1 Missense_Mutation p.L1141P 0.36 deleterious(0.03) benign(0.046) TCGA-AZ-6598-01 9 35870391 35870391 G A OR13J1 Missense_Mutation p.P3L 0.18 tolerated(0.29) benign(0.001) TCGA-AZ-6598-01 9 37034103 37034103 T C PAX5 5'UTR 0.28 TCGA-AZ-6598-01 9 37495181 37495181 C T POLR1E Missense_Mutation p.A188V 0.36 tolerated(1) benign(0.101) TCGA-AZ-6598-01 9 37733579 37733579 C A FRMPD1 Missense_Mutation p.L369M 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-6598-01 9 382626 382626 G T DOCK8 Missense_Mutation p.D907Y 0.42 deleterious(0) possibly_damaging(0.886) TCGA-AZ-6598-01 9 38610383 38610383 C T ANKRD18A Silent p.Q209Q 0.35 TCGA-AZ-6598-01 9 5969206 5969206 G T KIAA2026 Nonsense_Mutation p.S342* 0.47 TCGA-AZ-6598-01 9 67793823 67793823 G T FAM27B Intron 0.58 TCGA-AZ-6598-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.17 deleterious(0.01) possibly_damaging(0.573) TCGA-AZ-6598-01 9 71007241 71007241 T C PGM5 Missense_Mutation p.Y299H 0.35 deleterious(0) possibly_damaging(0.808) TCGA-AZ-6598-01 9 71509522 71509522 G A PIP5K1B Missense_Mutation p.A247T 0.07 deleterious(0.01) possibly_damaging(0.756) TCGA-AZ-6598-01 9 72521043 72521043 G A C9orf135 Silent p.V227V 0.36 TCGA-AZ-6598-01 9 72938444 72938444 G T SMC5 Missense_Mutation p.E732D 0.41 tolerated(0.1) possibly_damaging(0.889) TCGA-AZ-6598-01 9 79323719 79323719 C A PRUNE2 Missense_Mutation p.M1157I 0.44 tolerated(1) benign(0.001) TCGA-AZ-6598-01 9 79867172 79867172 G A VPS13A Missense_Mutation p.R731Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-AZ-6598-01 9 82320848 82320848 T C TLE4 Silent p.V258V 0.11 TCGA-AZ-6598-01 9 84208114 84208114 G A TLE1 Silent p.P469P 0.37 TCGA-AZ-6598-01 9 84534436 84534436 G A SPATA31D5P RNA 0.44 TCGA-AZ-6598-01 9 84547410 84547410 A - RP11-383M4.6 Intron 0.31 TCGA-AZ-6598-01 9 84607986 84607986 C A SPATA31D1 Silent p.S867S 0.42 TCGA-AZ-6598-01 9 84608339 84608339 G A SPATA31D1 Missense_Mutation p.R985H 0.58 tolerated(0.99) benign(0) TCGA-AZ-6598-01 9 8465649 8465649 G A PTPRD Silent p.R1177R 0.42 TCGA-AZ-6598-01 9 88631566 88631566 A - NAA35 Frame_Shift_Del p.T563Qfs*10 0.20 TCGA-AZ-6598-01 9 88938330 88938330 G A ZCCHC6 Missense_Mutation p.R779C 0.28 tolerated_low_confidence(0.23) benign(0.001) TCGA-AZ-6598-01 9 89763793 89763793 G A C9orf170 Missense_Mutation p.G50S 0.41 tolerated_low_confidence(0.66) benign(0) TCGA-AZ-6598-01 9 91628334 91628334 C T SHC3 3'UTR 0.31 TCGA-AZ-6598-01 9 92020428 92020428 G A SEMA4D 5'UTR 0.38 TCGA-AZ-6598-01 9 93375535 93375535 A T DIRAS2 Missense_Mutation p.L192H 0.39 deleterious(0.02) possibly_damaging(0.789) TCGA-AZ-6598-01 9 95219475 95219476 TA - ASPN 3'UTR 0.29 TCGA-AZ-6598-01 9 95584498 95584498 A G RNU6-714P 3'Flank 0.38 TCGA-AZ-6598-01 9 95738858 95738858 C T FGD3 Missense_Mutation p.A107V 0.46 tolerated(0.3) benign(0.023) TCGA-AZ-6598-01 9 95776255 95776255 C - FGD3 Frame_Shift_Del p.Q388Rfs*11 0.32 TCGA-AZ-6598-01 9 96019250 96019250 G A WNK2 Silent p.P737P 0.54 TCGA-AZ-6598-01 9 96024185 96024185 G A WNK2 Silent p.P1052P 0.47 TCGA-AZ-6598-01 9 96069068 96069068 T C WNK2 Missense_Mutation p.L2112P 0.41 unknown(0) TCGA-AZ-6598-01 9 96209868 96209868 C A FAM120AOS 3'UTR 0.41 TCGA-AZ-6598-01 9 96411440 96411440 G A PHF2 Missense_Mutation p.S183N 0.38 tolerated(0.2) unknown(0) TCGA-AZ-6598-01 9 98278975 98278975 C T RP11-435O5.4 3'Flank 0.11 TCGA-AZ-6598-01 X 100492741 100492741 C T DRP2 Nonsense_Mutation p.Q139* 0.68 TCGA-AZ-6598-01 X 101858450 101858450 A - ARMCX5 Frame_Shift_Del p.N462Ifs*8 0.43 TCGA-AZ-6598-01 X 101909950 101909950 T C GPRASP1 Missense_Mutation p.M370T 0.65 deleterious(0.01) benign(0.004) TCGA-AZ-6598-01 X 101909951 101909951 G A GPRASP1 Missense_Mutation p.M370I 0.65 deleterious(0) benign(0.018) TCGA-AZ-6598-01 X 102006037 102006037 T C BHLHB9 3'UTR 0.62 TCGA-AZ-6598-01 X 102842138 102842138 T - TCEAL4 Frame_Shift_Del p.L180Cfs*49 0.45 TCGA-AZ-6598-01 X 10417338 10417338 T C MID1 3'UTR 0.08 TCGA-AZ-6598-01 X 107316577 107316577 C T VSIG1 Silent p.C258C 0.31 TCGA-AZ-6598-01 X 107840798 107840798 T C COL4A5 Silent p.P593P 0.42 TCGA-AZ-6598-01 X 109441857 109441857 C - AMMECR1 Frame_Shift_Del p.R298Lfs*5 0.41 TCGA-AZ-6598-01 X 110555930 110555930 G - DCX Frame_Shift_Del p.K404Sfs*82 0.43 TCGA-AZ-6598-01 X 110925419 110925419 A G ALG13 Silent p.V47V 0.70 TCGA-AZ-6598-01 X 110988002 110988002 T A ALG13 Silent p.P934P 0.50 TCGA-AZ-6598-01 X 110988005 110988005 T A ALG13 Silent p.P935P 0.18 TCGA-AZ-6598-01 X 114426879 114426879 G A RBMXL3 Missense_Mutation p.A959T 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.499) TCGA-AZ-6598-01 X 128926360 128926361 - C SASH3 Frame_Shift_Ins p.Q169Pfs*22 0.49 TCGA-AZ-6598-01 X 12906230 12906230 G T TLR7 Missense_Mutation p.W868L 0.13 deleterious(0) probably_damaging(0.96) TCGA-AZ-6598-01 X 129480556 129480556 G A SLC25A14 Missense_Mutation p.V70I 0.63 tolerated(0.74) benign(0.162) TCGA-AZ-6598-01 X 129629810 129629810 C A RP1-274L7.1 Intron 0.67 TCGA-AZ-6598-01 X 130215773 130215773 G A ARHGAP36 Missense_Mutation p.R45H 0.72 tolerated_low_confidence(0.46) benign(0.004) TCGA-AZ-6598-01 X 132351776 132351776 A G TFDP3 Missense_Mutation p.L171P 0.10 deleterious(0) probably_damaging(0.991) TCGA-AZ-6598-01 X 134186123 134186123 G A FAM127B Nonsense_Mutation p.Q6* 0.77 TCGA-AZ-6598-01 X 136113121 136113121 A G GPR101 Missense_Mutation p.V238A 0.13 tolerated(0.65) benign(0.003) TCGA-AZ-6598-01 X 13682196 13682196 T - TCEANC 3'UTR 0.45 TCGA-AZ-6598-01 X 138724736 138724736 A G MCF2 Intron 0.10 TCGA-AZ-6598-01 X 144909518 144909518 G A TMEM257 Nonsense_Mutation p.W108* 0.68 TCGA-AZ-6598-01 X 149678264 149678264 G T MAMLD1 Missense_Mutation p.M625I 0.09 tolerated(0.16) benign(0.038) TCGA-AZ-6598-01 X 149919279 149919279 C T MTMR1 Silent p.T540T 0.40 TCGA-AZ-6598-01 X 150869302 150869302 G A PRRG3 Missense_Mutation p.G165S 0.13 tolerated(0.2) benign(0.001) TCGA-AZ-6598-01 X 150890398 150890398 C T FATE1 Missense_Mutation p.A122V 0.18 tolerated(0.06) possibly_damaging(0.566) TCGA-AZ-6598-01 X 152101454 152101454 G A ZNF185 Missense_Mutation p.G353R 0.07 tolerated(0.48) benign(0.028) TCGA-AZ-6598-01 X 152721027 152721027 C T HAUS7 Silent p.T311T 0.71 TCGA-AZ-6598-01 X 152845525 152845525 G A ATP2B3 Silent p.T1144T 0.41 TCGA-AZ-6598-01 X 153130411 153130411 G A L1CAM Missense_Mutation p.R971W 0.70 deleterious(0.02) possibly_damaging(0.601) TCGA-AZ-6598-01 X 153219632 153219632 C T HCFC1 Silent p.A1406A 0.13 TCGA-AZ-6598-01 X 153577382 153577382 C A FLNA Silent p.G2593G 0.74 TCGA-AZ-6598-01 X 153583264 153583264 G - FLNA Frame_Shift_Del p.Q1716Sfs*23 0.47 TCGA-AZ-6598-01 X 153587974 153587974 C T FLNA Silent p.V1340V 0.62 TCGA-AZ-6598-01 X 153631029 153631030 - G DNASE1L1 3'UTR 0.49 TCGA-AZ-6598-01 X 153693480 153693480 C T PLXNA3 Silent p.C721C 0.62 TCGA-AZ-6598-01 X 15381294 15381294 G A FIGF Missense_Mutation p.R80C 0.68 deleterious(0) possibly_damaging(0.88) TCGA-AZ-6598-01 X 154033724 154033724 C T MPP1 5'UTR 0.10 TCGA-AZ-6598-01 X 154157126 154157126 T C F8 Missense_Mutation p.K1647E 0.64 tolerated(0.12) benign(0.035) TCGA-AZ-6598-01 X 155004300 155004300 G A SPRY3 Missense_Mutation p.R256Q 0.68 tolerated(0.24) benign(0.388) TCGA-AZ-6598-01 X 15794840 15794840 G A CA5B Missense_Mutation p.A208T 0.64 tolerated(0.7) benign(0.002) TCGA-AZ-6598-01 X 1584751 1584751 C T P2RY8 Missense_Mutation p.R234H 0.73 tolerated(0.09) possibly_damaging(0.864) TCGA-AZ-6598-01 X 16847825 16847825 C T TXLNG Nonsense_Mutation p.R266* 0.69 TCGA-AZ-6598-01 X 17710497 17710497 C - NHS Frame_Shift_Del p.L256Ffs*28 0.49 TCGA-AZ-6598-01 X 18660145 18660145 C G RS1 Missense_Mutation p.E218D 0.29 tolerated(0.23) benign(0.034) TCGA-AZ-6598-01 X 21675704 21675704 C T KLHL34 Missense_Mutation p.R68H 0.79 tolerated(0.19) benign(0.013) TCGA-AZ-6598-01 X 2408607 2408607 C T ZBED1 Missense_Mutation p.A52T 0.71 tolerated(0.26) benign(0.091) TCGA-AZ-6598-01 X 29959775 29959775 G A IL1RAPL1 Missense_Mutation p.M355I 0.68 tolerated(0.65) benign(0.098) TCGA-AZ-6598-01 X 34148839 34148839 C T FAM47A Silent p.S519S 0.74 TCGA-AZ-6598-01 X 34675057 34675057 C T TMEM47 Silent p.A30A 0.54 TCGA-AZ-6598-01 X 37027987 37027987 C - FAM47C Frame_Shift_Del p.K504Rfs*321 0.45 TCGA-AZ-6598-01 X 38664266 38664266 G T MID1IP1 Missense_Mutation p.G23C 0.06 deleterious(0.04) probably_damaging(0.924) TCGA-AZ-6598-01 X 39913250 39913250 C A BCOR Missense_Mutation p.G1622V 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-6598-01 X 40568632 40568632 G A MED14 Missense_Mutation p.A418V 0.63 tolerated(0.31) benign(0.034) TCGA-AZ-6598-01 X 40982912 40982912 G A USP9X Missense_Mutation p.G11R 0.67 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-AZ-6598-01 X 41333577 41333577 G A NYX Missense_Mutation p.A291T 0.20 tolerated(0.43) benign(0.004) TCGA-AZ-6598-01 X 41390339 41390339 G A CASK Missense_Mutation p.A809V 0.43 deleterious(0.02) probably_damaging(0.973) TCGA-AZ-6598-01 X 47028739 47028739 C T RBM10 Missense_Mutation p.R15C 0.57 deleterious(0) unknown(0) TCGA-AZ-6598-01 X 47061869 47061869 C T UBA1 Missense_Mutation p.A341V 0.66 tolerated(0.2) benign(0.009) TCGA-AZ-6598-01 X 47072566 47072566 G A UBA1 Missense_Mutation p.A942T 0.68 deleterious(0.01) probably_damaging(0.928) TCGA-AZ-6598-01 X 48417434 48417434 A G TBC1D25 Intron 0.12 TCGA-AZ-6598-01 X 48932493 48932493 T C WDR45 Missense_Mutation p.Y352C 0.06 deleterious(0) probably_damaging(0.967) TCGA-AZ-6598-01 X 49021311 49021311 C T MAGIX Silent p.R130R 0.08 TCGA-AZ-6598-01 X 49061672 49061672 G A CACNA1F Silent p.S1953S 0.74 TCGA-AZ-6598-01 X 49646534 49646534 G - USP27X 3'UTR 0.43 TCGA-AZ-6598-01 X 49646964 49646964 A G USP27X 3'UTR 0.53 TCGA-AZ-6598-01 X 52674517 52674517 G A SSX7 Silent p.S181S 0.51 TCGA-AZ-6598-01 X 53116989 53116989 A C TSPYL2 Missense_Mutation p.E650D 0.30 tolerated_low_confidence(0.08) unknown(0) TCGA-AZ-6598-01 X 53577972 53577972 T C HUWE1 Missense_Mutation p.E3092G 0.65 benign(0.403) TCGA-AZ-6598-01 X 54099548 54099548 C T FAM120C Missense_Mutation p.R1070H 0.08 tolerated_low_confidence(0.82) benign(0.002) TCGA-AZ-6598-01 X 54319695 54319695 C T WNK3 Missense_Mutation p.V587I 0.64 tolerated(0.94) benign(0.001) TCGA-AZ-6598-01 X 54950944 54950944 C T TRO Missense_Mutation p.R433W 0.74 tolerated(0.28) unknown(0) TCGA-AZ-6598-01 X 595505 595505 G A SHOX Missense_Mutation p.A144T 0.66 deleterious(0) possibly_damaging(0.821) TCGA-AZ-6598-01 X 62857911 62857911 T - ARHGEF9 Frame_Shift_Del p.K516Nfs*14 0.46 TCGA-AZ-6598-01 X 70360612 70360617 CAGCAA - MED12 In_Frame_Del p.Q2075_Q2076del 0.57 TCGA-AZ-6598-01 X 72225132 72225133 GT - PABPC1L2B 3'UTR 0.61 TCGA-AZ-6598-01 X 75649097 75649097 C A MAGEE1 Silent p.T258T 0.19 TCGA-AZ-6598-01 X 76939102 76939102 C T ATRX Missense_Mutation p.S549N 0.08 benign(0) TCGA-AZ-6598-01 X 77150988 77150988 C A MAGT1 Missense_Mutation p.G6W 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.473) TCGA-AZ-6598-01 X 77284830 77284830 T C ATP7A Silent p.C1000C 0.08 TCGA-AZ-6598-01 X 79999706 79999706 C T BRWD3 Missense_Mutation p.R213H 0.12 deleterious(0.01) benign(0.26) TCGA-AZ-6598-01 X 88009085 88009085 A G CPXCR1 Missense_Mutation p.K224E 0.12 tolerated(0.12) possibly_damaging(0.801) TCGA-AZ-6598-01 X 99933608 99933608 C T SYTL4 Intron 0.63 TCGA-AZ-6599-01 10 100995275 100995275 G A HPSE2 Silent p.F95F 0.25 TCGA-AZ-6599-01 10 101491841 101491841 C T COX15 5'UTR 0.39 TCGA-AZ-6599-01 10 101491842 101491842 C T COX15 5'UTR 0.37 TCGA-AZ-6599-01 10 101935765 101935765 G A ERLIN1 Missense_Mutation p.H123Y 0.29 tolerated(0.07) probably_damaging(0.994) TCGA-AZ-6599-01 10 102827526 102827526 G A KAZALD1 3'Flank 0.57 TCGA-AZ-6599-01 10 121337227 121337227 A G TIAL1 Missense_Mutation p.F210S 0.39 tolerated(0.2) benign(0.032) TCGA-AZ-6599-01 10 5493854 5493854 C T NET1 Missense_Mutation p.S106F 0.33 deleterious(0.02) benign(0.117) TCGA-AZ-6599-01 10 82034948 82034948 G A MAT1A Missense_Mutation p.A259V 0.45 deleterious(0.03) benign(0.247) TCGA-AZ-6599-01 10 88935798 88935798 C T FAM35A Intron 0.35 TCGA-AZ-6599-01 10 90611360 90611360 C T ANKRD22 Missense_Mutation p.G2E 0.40 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-AZ-6599-01 10 95338937 95338937 G A FFAR4 Missense_Mutation p.A240T 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-AZ-6599-01 10 98079060 98079060 G A DNTT Silent p.P140P 0.30 TCGA-AZ-6599-01 10 99502893 99502893 C T ZFYVE27 Silent p.L80L 0.36 TCGA-AZ-6599-01 11 111154900 111154900 C T C11orf53 Missense_Mutation p.S36F 0.26 deleterious(0) possibly_damaging(0.812) TCGA-AZ-6599-01 11 111957641 111957641 C T SDHD Missense_Mutation p.L4F 0.36 tolerated(0.06) benign(0.015) TCGA-AZ-6599-01 11 112097162 112097162 G A PTS 5'UTR 0.45 TCGA-AZ-6599-01 11 12231131 12231131 G A MICAL2 Missense_Mutation p.R226K 0.41 tolerated(0.09) benign(0.007) TCGA-AZ-6599-01 11 1244393 1244393 C T MUC5B Silent p.L14L 0.39 TCGA-AZ-6599-01 11 126276021 126276021 C T ST3GAL4 5'UTR 0.28 TCGA-AZ-6599-01 11 1267134 1267134 C T MUC5B Silent p.S3008S 0.37 TCGA-AZ-6599-01 11 1267157 1267157 C T MUC5B Missense_Mutation p.P3016L 0.38 unknown(0) TCGA-AZ-6599-01 11 34909974 34909974 T C APIP Silent p.G109G 0.11 TCGA-AZ-6599-01 11 36310927 36310927 G A COMMD9 Silent p.L12L 0.32 TCGA-AZ-6599-01 11 3877458 3877458 C T STIM1 5'UTR 0.27 TCGA-AZ-6599-01 11 418456 418456 C T ANO9 Missense_Mutation p.G755D 0.40 tolerated(0.15) benign(0.446) TCGA-AZ-6599-01 11 47381434 47381434 C T SPI1 Missense_Mutation p.M101I 0.29 tolerated(0.51) benign(0.001) TCGA-AZ-6599-01 11 56409534 56409534 G T OR5AP2 Missense_Mutation p.R128S 0.39 deleterious(0) probably_damaging(0.937) TCGA-AZ-6599-01 11 5776411 5776411 G A OR52N4 Silent p.G147G 0.44 TCGA-AZ-6599-01 11 62437486 62437486 C T C11orf48 Silent p.G6G 0.34 TCGA-AZ-6599-01 11 62529076 62529076 G A POLR2G 5'UTR 0.35 TCGA-AZ-6599-01 11 63994106 63994106 G A NUDT22 Splice_Site 0.39 TCGA-AZ-6599-01 11 63994116 63994116 G A NUDT22 5'UTR 0.40 TCGA-AZ-6599-01 11 64122819 64122819 G A CCDC88B Missense_Mutation p.R1418Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-AZ-6599-01 11 64602883 64602883 C T CDC42BPG Missense_Mutation p.G630D 0.33 tolerated(0.38) possibly_damaging(0.548) TCGA-AZ-6599-01 11 64764445 64764445 G A BATF2 5'UTR 0.25 TCGA-AZ-6599-01 11 65308346 65308346 G A LTBP3 Silent p.H991H 0.30 TCGA-AZ-6599-01 11 65308354 65308354 G A LTBP3 Missense_Mutation p.P989S 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-6599-01 11 65403956 65403956 G A PCNXL3 Silent p.Q1896Q 0.33 TCGA-AZ-6599-01 11 65822751 65822751 G T SF3B2 Missense_Mutation p.A155S 0.46 tolerated_low_confidence(0.07) probably_damaging(0.935) TCGA-AZ-6599-01 11 66360703 66360703 C T CCS 5'UTR 0.38 TCGA-AZ-6599-01 11 67166196 67166196 G A PPP1CA Silent p.F304F 0.38 TCGA-AZ-6599-01 11 70028643 70028643 G A ANO1 Silent p.P813P 0.32 TCGA-AZ-6599-01 11 71189491 71189491 G A NADSYN1 Silent p.A283A 0.41 TCGA-AZ-6599-01 11 75898183 75898183 A G WNT11 Missense_Mutation p.C331R 0.11 deleterious(0) probably_damaging(0.998) TCGA-AZ-6599-01 11 82868638 82868638 G A PCF11 Missense_Mutation p.E53K 0.34 deleterious(0) benign(0.001) TCGA-AZ-6599-01 11 85375769 85375769 G A CREBZF Missense_Mutation p.P51S 0.47 deleterious_low_confidence(0.05) benign(0.248) TCGA-AZ-6599-01 12 108954505 108954505 G A SART3 Intron 0.28 TCGA-AZ-6599-01 12 113875804 113875804 G T SDSL Missense_Mutation p.V304F 0.40 deleterious(0) possibly_damaging(0.891) TCGA-AZ-6599-01 12 117768733 117768733 G A NOS1 Missense_Mutation p.R48C 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-AZ-6599-01 12 132393245 132393245 G A ULK1 Missense_Mutation p.A125T 0.40 deleterious(0) probably_damaging(0.999) TCGA-AZ-6599-01 12 16035690 16035690 G A STRAP Missense_Mutation p.V17M 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-6599-01 12 21970149 21970149 C T ABCC9 Missense_Mutation p.M1288I 0.10 tolerated(0.53) benign(0.002) TCGA-AZ-6599-01 12 25308249 25308249 G A CASC1 Missense_Mutation p.S99F 0.38 deleterious(0) possibly_damaging(0.894) TCGA-AZ-6599-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.47 deleterious(0.04) possibly_damaging(0.506) TCGA-AZ-6599-01 12 31256924 31256924 C T DDX11 Missense_Mutation p.T957I 0.41 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-AZ-6599-01 12 49075573 49075573 C T KANSL2 Intron 0.43 TCGA-AZ-6599-01 12 50348071 50348071 G T AQP2 Missense_Mutation p.G165V 0.19 deleterious(0) probably_damaging(1) TCGA-AZ-6599-01 12 52708183 52708183 C T KRT83 3'UTR 0.33 TCGA-AZ-6599-01 12 53445657 53445657 C T TENC1 Missense_Mutation p.H42Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-AZ-6599-01 12 54059154 54059154 C T ATP5G2 Missense_Mutation p.E181K 0.37 deleterious(0.01) possibly_damaging(0.58) TCGA-AZ-6599-01 12 54070082 54070082 C T ATP5G2 5'UTR 0.32 TCGA-AZ-6599-01 12 56075746 56075746 G A METTL7B Missense_Mutation p.G70R 0.39 tolerated(0.08) benign(0.082) TCGA-AZ-6599-01 12 56664118 56664118 C T COQ10A 3'UTR 0.31 TCGA-AZ-6599-01 12 65004481 65004481 C T RASSF3 Silent p.F23F 0.36 TCGA-AZ-6599-01 12 72057139 72057139 C T ZFC3H1 Silent p.R84R 0.28 TCGA-AZ-6599-01 12 72057142 72057142 C T ZFC3H1 Silent p.L83L 0.27 TCGA-AZ-6599-01 12 76742212 76742212 G A BBS10 5'UTR 0.26 TCGA-AZ-6599-01 13 32911124 32911124 G A BRCA2 Missense_Mutation p.D878N 0.48 tolerated(1) benign(0.001) TCGA-AZ-6599-01 13 38266167 38266167 G A TRPC4 Silent p.I401I 0.10 TCGA-AZ-6599-01 13 39612858 39612858 C T NHLRC3 Missense_Mutation p.P28S 0.36 tolerated_low_confidence(0.24) benign(0.015) TCGA-AZ-6599-01 13 43597670 43597670 G A DNAJC15 5'UTR 0.29 TCGA-AZ-6599-01 13 53422114 53422114 C T PCDH8 Missense_Mutation p.R153H 0.34 deleterious(0.04) possibly_damaging(0.579) TCGA-AZ-6599-01 13 73636157 73636157 C T KLF5 Silent p.L140L 0.30 TCGA-AZ-6599-01 13 73636158 73636158 C T KLF5 Missense_Mutation p.P141S 0.30 deleterious(0) probably_damaging(0.968) TCGA-AZ-6599-01 13 76335034 76335034 C T LMO7 5'UTR 0.23 TCGA-AZ-6599-01 14 20711906 20711906 G T OR11H4 Missense_Mutation p.R319I 0.45 deleterious(0.02) benign(0.022) TCGA-AZ-6599-01 14 21270035 21270035 G A RNASE1 Nonsense_Mutation p.Q65* 0.38 TCGA-AZ-6599-01 14 23355882 23355882 C T REM2 Missense_Mutation p.H263Y 0.38 deleterious(0.01) possibly_damaging(0.523) TCGA-AZ-6599-01 14 23378706 23378706 G A RBM23 Silent p.I55I 0.42 TCGA-AZ-6599-01 14 24424316 24424316 G A DHRS4 Silent p.Q67Q 0.41 TCGA-AZ-6599-01 14 24911463 24911463 C T SDR39U1 Missense_Mutation p.E43K 0.41 tolerated(0.06) benign(0.025) TCGA-AZ-6599-01 14 39736562 39736562 G A CTAGE5 5'UTR 0.26 TCGA-AZ-6599-01 14 58895046 58895046 C T KIAA0586 Missense_Mutation p.R34C 0.33 deleterious(0.02) probably_damaging(0.983) TCGA-AZ-6599-01 14 61748152 61748152 G A TMEM30B 5'UTR 0.39 TCGA-AZ-6599-01 14 65208349 65208349 A G PLEKHG3 Missense_Mutation p.K649R 0.11 tolerated(0.41) possibly_damaging(0.664) TCGA-AZ-6599-01 14 76248830 76248830 A G TTLL5 Missense_Mutation p.D839G 0.38 tolerated(0.19) probably_damaging(0.999) TCGA-AZ-6599-01 14 89291043 89291043 C T TTC8 5'UTR 0.45 TCGA-AZ-6599-01 14 92336517 92336517 C T FBLN5 3'UTR 0.48 TCGA-AZ-6599-01 14 97009195 97009195 C T PAPOLA Silent p.P418P 0.37 TCGA-AZ-6599-01 15 23890894 23890894 G - MAGEL2 Frame_Shift_Del p.Q63Sfs*36 0.35 TCGA-AZ-6599-01 15 26806111 26806111 T A GABRB3 Nonsense_Mutation p.K350* 0.34 TCGA-AZ-6599-01 15 39546219 39546219 C A C15orf54 3'UTR 0.33 TCGA-AZ-6599-01 15 41046904 41046904 G A RMDN3 Silent p.F26F 0.42 TCGA-AZ-6599-01 15 43663487 43663487 G A TUBGCP4 5'UTR 0.40 TCGA-AZ-6599-01 15 44876443 44876443 C T SPG11 Missense_Mutation p.G1812E 0.36 tolerated(1) benign(0.253) TCGA-AZ-6599-01 15 45414419 45414419 C T DUOXA1 Missense_Mutation p.V57M 0.31 deleterious(0.01) possibly_damaging(0.808) TCGA-AZ-6599-01 15 45723248 45723248 C T C15orf48 Missense_Mutation p.S29F 0.34 tolerated(0.3) benign(0.06) TCGA-AZ-6599-01 15 52702533 52702533 G A MYO5A Silent p.F251F 0.46 TCGA-AZ-6599-01 15 56285791 56285791 C T NEDD4 5'UTR 0.40 TCGA-AZ-6599-01 15 58904119 58904119 G A ADAM10 Missense_Mutation p.S528L 0.36 deleterious(0) possibly_damaging(0.906) TCGA-AZ-6599-01 15 64445861 64445861 G A SNX22 Missense_Mutation p.E124K 0.35 tolerated(0.08) benign(0) TCGA-AZ-6599-01 15 66411439 66411439 C T MEGF11 Missense_Mutation p.G96R 0.39 tolerated(0.38) benign(0.015) TCGA-AZ-6599-01 15 78765882 78765882 A G IREB2 Intron 0.14 TCGA-AZ-6599-01 15 85177186 85177186 G A RP11-182J1.1 RNA 0.32 TCGA-AZ-6599-01 15 90039688 90039688 C T RHCG Missense_Mutation p.V30M 0.34 deleterious(0.01) possibly_damaging(0.73) TCGA-AZ-6599-01 15 90764258 90764258 C G SEMA4B Silent p.V176V 0.33 TCGA-AZ-6599-01 15 90800430 90800430 G A TTLL13 Missense_Mutation p.D256N 0.31 deleterious(0.01) benign(0.272) TCGA-AZ-6599-01 16 1447269 1447269 G A UNKL Silent p.H254H 0.39 TCGA-AZ-6599-01 16 16284056 16284056 C G ABCC6 Missense_Mutation p.V534L 0.43 tolerated(0.27) benign(0.02) TCGA-AZ-6599-01 16 20370794 20370794 C A PDILT Missense_Mutation p.Q534H 0.38 deleterious_low_confidence(0.01) benign(0.288) TCGA-AZ-6599-01 16 28943798 28943798 C T CD19 Missense_Mutation p.H74Y 0.36 tolerated(0.18) benign(0.001) TCGA-AZ-6599-01 16 30133466 30133466 C T MAPK3 Intron 0.35 TCGA-AZ-6599-01 16 30594001 30594001 G A ZNF785 Silent p.S366S 0.38 TCGA-AZ-6599-01 16 3064432 3064432 G A CLDN9 3'UTR 0.30 TCGA-AZ-6599-01 16 30662986 30662986 C T PRR14 Missense_Mutation p.S7F 0.48 deleterious_low_confidence(0.04) benign(0.014) TCGA-AZ-6599-01 16 3349697 3349697 G A TIGD7 Silent p.S306S 0.34 TCGA-AZ-6599-01 16 3900740 3900740 C A CREBBP Missense_Mutation p.G119V 0.41 benign(0.443) TCGA-AZ-6599-01 16 456387 456387 G A DECR2 Missense_Mutation p.R64Q 0.26 deleterious(0.02) benign(0.305) TCGA-AZ-6599-01 16 47163133 47163133 A G NETO2 Splice_Site p.X78_splice 0.17 TCGA-AZ-6599-01 16 48577115 48577115 G A N4BP1 Silent p.F797F 0.39 TCGA-AZ-6599-01 16 70182424 70182424 G A PDPR Missense_Mutation p.E674K 0.34 deleterious(0.01) possibly_damaging(0.905) TCGA-AZ-6599-01 16 70190788 70190788 C T PDPR 3'UTR 0.18 TCGA-AZ-6599-01 16 70333109 70333109 G A DDX19B 5'UTR 0.50 TCGA-AZ-6599-01 16 75339010 75339010 G A CFDP1 Missense_Mutation p.L241F 0.35 deleterious(0) probably_damaging(0.999) TCGA-AZ-6599-01 16 81324294 81324294 G A BCMO1 3'UTR 0.36 TCGA-AZ-6599-01 16 82101900 82101900 C T HSD17B2 Missense_Mutation p.R131C 0.36 deleterious(0.01) benign(0.299) TCGA-AZ-6599-01 17 15554971 15554971 G A TRIM16 5'UTR 0.46 TCGA-AZ-6599-01 17 18391045 18391045 G A LGALS9C Missense_Mutation p.V140M 0.22 deleterious(0.04) probably_damaging(0.989) TCGA-AZ-6599-01 17 18881470 18881470 G A FAM83G Silent p.P503P 0.57 TCGA-AZ-6599-01 17 19282363 19282363 C T MAPK7 Silent p.D50D 0.33 TCGA-AZ-6599-01 17 37886528 37886528 C T MIEN1 Missense_Mutation p.E36K 0.42 tolerated(0.28) benign(0.019) TCGA-AZ-6599-01 17 41605991 41605991 C T ETV4 Missense_Mutation p.E451K 0.33 deleterious(0) probably_damaging(0.993) TCGA-AZ-6599-01 17 42982440 42982440 G A FAM187A 3'UTR 0.32 TCGA-AZ-6599-01 17 43552718 43552718 G A PLEKHM1 Missense_Mutation p.S224F 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-6599-01 17 45608819 45608819 C T NPEPPS Silent p.F51F 0.33 TCGA-AZ-6599-01 17 46507444 46507444 G A SKAP1 Silent p.L13L 0.37 TCGA-AZ-6599-01 17 46670801 46670801 C T HOXB5 Missense_Mutation p.E82K 0.38 tolerated(0.18) benign(0.275) TCGA-AZ-6599-01 17 4692344 4692344 G A GLTPD2 Nonsense_Mutation p.W13* 0.37 TCGA-AZ-6599-01 17 4804129 4804129 C T CHRNE Silent p.Q292Q 0.38 TCGA-AZ-6599-01 17 5036765 5036765 C T USP6 Missense_Mutation p.P102S 0.38 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-AZ-6599-01 17 52978135 52978135 G A TOM1L1 5'UTR 0.38 TCGA-AZ-6599-01 17 55038394 55038394 C T COIL 5'UTR 0.39 TCGA-AZ-6599-01 17 55334374 55334374 G A MSI2 Intron 0.38 TCGA-AZ-6599-01 17 62081040 62081040 G A ICAM2 Missense_Mutation p.H205Y 0.34 tolerated(0.17) benign(0.001) TCGA-AZ-6599-01 17 6358942 6358942 C T PITPNM3 Missense_Mutation p.A881T 0.64 deleterious(0.03) benign(0.228) TCGA-AZ-6599-01 17 6555268 6555268 C T C17orf100 Missense_Mutation p.P12L 0.36 deleterious_low_confidence(0.04) probably_damaging(0.958) TCGA-AZ-6599-01 17 66267512 66267512 G A SLC16A6 Silent p.A263A 0.37 TCGA-AZ-6599-01 17 7222493 7222493 G A NEURL4 Missense_Mutation p.S1187F 0.32 deleterious(0.01) possibly_damaging(0.617) TCGA-AZ-6599-01 17 72428228 72428228 G A GPRC5C Silent p.Q17Q 0.24 TCGA-AZ-6599-01 17 72428278 72428278 G A GPRC5C Missense_Mutation p.G34E 0.41 tolerated_low_confidence(0.14) benign(0) TCGA-AZ-6599-01 17 7460786 7460786 C T TNFSF12 Intron 0.38 TCGA-AZ-6599-01 17 78965691 78965691 G A CHMP6 5'UTR 0.54 TCGA-AZ-6599-01 18 56807143 56807143 C T SEC11C 5'UTR 0.52 TCGA-AZ-6599-01 18 56892772 56892772 A C GRP Missense_Mutation p.E63A 0.17 deleterious(0.02) possibly_damaging(0.813) TCGA-AZ-6599-01 18 61654364 61654364 C T SERPINB8 Missense_Mutation p.T326I 0.40 deleterious(0) probably_damaging(0.996) TCGA-AZ-6599-01 19 11892632 11892632 C T ZNF441 Missense_Mutation p.H665Y 0.38 deleterious(0) probably_damaging(0.917) TCGA-AZ-6599-01 19 12075909 12075909 C T ZNF763 5'UTR 0.25 TCGA-AZ-6599-01 19 16236305 16236305 C T RAB8A Missense_Mutation p.T91I 0.32 deleterious(0) probably_damaging(0.989) TCGA-AZ-6599-01 19 18304090 18304090 C T MPV17L2 5'UTR 0.52 TCGA-AZ-6599-01 19 18991080 18991080 C T CERS1 Intron 0.52 TCGA-AZ-6599-01 19 2151360 2151360 G A AP3D1 5'UTR 0.50 TCGA-AZ-6599-01 19 23329616 23329616 G A ZNF730 3'UTR 0.35 TCGA-AZ-6599-01 19 35524976 35524976 C T SCN1B Nonsense_Mutation p.R261* 0.36 TCGA-AZ-6599-01 19 39306210 39306210 G A ECH1 3'UTR 0.43 TCGA-AZ-6599-01 19 39516162 39516162 G A FBXO27 Silent p.G247G 0.10 TCGA-AZ-6599-01 19 40005924 40005924 G A SELV Silent p.P24P 0.39 TCGA-AZ-6599-01 19 40367823 40367823 G A FCGBP Silent p.A4379A 0.12 TCGA-AZ-6599-01 19 40873696 40873696 C T PLD3 Silent p.L113L 0.34 TCGA-AZ-6599-01 19 41111329 41111329 G A LTBP4 Missense_Mutation p.S221N 0.43 tolerated(0.39) benign(0.227) TCGA-AZ-6599-01 19 41699340 41699340 C T CYP2S1 Silent p.L57L 0.35 TCGA-AZ-6599-01 19 46216046 46216046 C T FBXO46 Silent p.A236A 0.34 TCGA-AZ-6599-01 19 46216506 46216506 C T FBXO46 Missense_Mutation p.R83Q 0.25 deleterious(0.01) probably_damaging(0.947) TCGA-AZ-6599-01 19 46394204 46394204 C T MYPOP Missense_Mutation p.A293T 0.59 deleterious(0.04) probably_damaging(0.978) TCGA-AZ-6599-01 19 48836477 48836477 C T TMEM143 Silent p.%3D 0.36 TCGA-AZ-6599-01 19 49005734 49005734 G A LMTK3 Silent p.I279I 0.35 TCGA-AZ-6599-01 19 50789901 50789901 C T MYH14 Missense_Mutation p.R1568W 0.41 deleterious(0) probably_damaging(0.986) TCGA-AZ-6599-01 19 51522338 51522338 G A KLK10 Silent p.L17L 0.30 TCGA-AZ-6599-01 19 53057187 53057187 G A ZNF808 Missense_Mutation p.E340K 0.44 deleterious(0.02) probably_damaging(0.993) TCGA-AZ-6599-01 19 54976240 54976240 C T CDC42EP5 3'UTR 0.32 TCGA-AZ-6599-01 19 5951405 5951405 C T RANBP3 Missense_Mutation p.G94E 0.24 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-AZ-6599-01 19 5951415 5951415 C T RANBP3 Missense_Mutation p.E91K 0.27 tolerated_low_confidence(0.21) benign(0.025) TCGA-AZ-6599-01 19 6495782 6495782 G A TUBB4A Missense_Mutation p.P243L 0.10 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-AZ-6599-01 19 7152867 7152867 C T INSR Missense_Mutation p.E701K 0.36 tolerated(0.13) benign(0.004) TCGA-AZ-6599-01 19 7585235 7585235 T C ZNF358 Silent p.H369H 0.13 TCGA-AZ-6599-01 19 7676702 7676702 G A CAMSAP3 Silent p.A468A 0.55 TCGA-AZ-6599-01 19 964396 964396 G A ARID3A Silent p.T305T 0.30 TCGA-AZ-6599-01 1 109618617 109618617 G A TAF13 5'UTR 0.18 TCGA-AZ-6599-01 1 113652899 113652899 G A LRIG2 Missense_Mutation p.E505K 0.32 tolerated(0.19) benign(0.014) TCGA-AZ-6599-01 1 118065876 118065876 C T MAN1A2 3'UTR 0.29 TCGA-AZ-6599-01 1 12401884 12401884 C T VPS13D Silent p.L2892L 0.32 TCGA-AZ-6599-01 1 12428626 12428626 C T VPS13D Nonsense_Mutation p.R3518* 0.39 TCGA-AZ-6599-01 1 150337331 150337331 G A RPRD2 Nonsense_Mutation p.W47* 0.31 TCGA-AZ-6599-01 1 152659786 152659786 G C LCE2B 3'UTR 0.26 TCGA-AZ-6599-01 1 155023162 155023162 G A DCST1 Missense_Mutation p.V647M 0.53 tolerated(0.12) benign(0.217) TCGA-AZ-6599-01 1 155112711 155112711 C T DPM3 Silent p.T32T 0.40 TCGA-AZ-6599-01 1 156261409 156261409 C T TMEM79 3'UTR 0.40 TCGA-AZ-6599-01 1 161059134 161059134 C T PVRL4 5'UTR 0.33 TCGA-AZ-6599-01 1 161068363 161068363 C T KLHDC9 Missense_Mutation p.S13L 0.34 deleterious_low_confidence(0.04) benign(0.002) TCGA-AZ-6599-01 1 161197735 161197735 C T TOMM40L Missense_Mutation p.T147I 0.37 deleterious(0) probably_damaging(0.99) TCGA-AZ-6599-01 1 161197743 161197743 C T TOMM40L Silent p.L150L 0.38 TCGA-AZ-6599-01 1 161559488 161559488 C A RP11-25K21.6 Intron 0.15 TCGA-AZ-6599-01 1 169695921 169695921 C A SELE Missense_Mutation p.V558L 0.15 tolerated(0.08) benign(0.008) TCGA-AZ-6599-01 1 18807469 18807469 G A KLHDC7A 5'UTR 0.43 TCGA-AZ-6599-01 1 19483402 19483402 G A UBR4 Silent p.L1926L 0.29 TCGA-AZ-6599-01 1 196977911 196977911 C A CFHR5 3'UTR 0.31 TCGA-AZ-6599-01 1 204415137 204415137 C T PIK3C2B Silent p.L875L 0.33 TCGA-AZ-6599-01 1 207196117 207196117 C T C1orf116 Missense_Mutation p.G331E 0.33 tolerated(0.17) probably_damaging(0.938) TCGA-AZ-6599-01 1 212799433 212799433 G A FAM71A Missense_Mutation p.S405N 0.34 tolerated(0.14) benign(0.005) TCGA-AZ-6599-01 1 218458683 218458683 C T RRP15 Missense_Mutation p.R9C 0.37 tolerated_low_confidence(0.07) benign(0.045) TCGA-AZ-6599-01 1 224377593 224377593 C T DEGS1 Missense_Mutation p.R133W 0.06 deleterious(0) probably_damaging(0.954) TCGA-AZ-6599-01 1 227381486 227381486 C - CDC42BPA Splice_Site p.X200_splice 0.24 TCGA-AZ-6599-01 1 24121190 24121190 G A LYPLA2 Missense_Mutation p.E222K 0.37 tolerated(0.63) benign(0.031) TCGA-AZ-6599-01 1 2426364 2426364 G A PLCH2 Missense_Mutation p.V550M 0.31 tolerated(1) benign(0.007) TCGA-AZ-6599-01 1 24435061 24435061 G A MYOM3 Silent p.H22H 0.28 TCGA-AZ-6599-01 1 26365728 26365728 G A SLC30A2 Missense_Mutation p.H348Y 0.36 tolerated(0.15) probably_damaging(0.999) TCGA-AZ-6599-01 1 28785655 28785655 G A PHACTR4 Missense_Mutation p.D36N 0.32 deleterious(0.04) probably_damaging(0.92) TCGA-AZ-6599-01 1 33612881 33612881 C T TRIM62 Missense_Mutation p.R442H 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-AZ-6599-01 1 37319258 37319258 A C GRIK3 Missense_Mutation p.F390L 0.44 tolerated(0.06) probably_damaging(0.934) TCGA-AZ-6599-01 1 45267416 45267416 C T PLK3 Silent p.L186L 0.29 TCGA-AZ-6599-01 1 47799594 47799594 C T CMPK1 5'UTR 0.38 TCGA-AZ-6599-01 1 52195645 52195645 G A OSBPL9 Intron 0.39 TCGA-AZ-6599-01 1 52747419 52747419 C T ZFYVE9 Missense_Mutation p.P986S 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-AZ-6599-01 1 62676046 62676046 G A L1TD1 Missense_Mutation p.E534K 0.39 tolerated_low_confidence(0.39) benign(0.007) TCGA-AZ-6599-01 1 6473207 6473207 G A HES2 3'Flank 0.38 TCGA-AZ-6599-01 1 6655200 6655200 G A KLHL21 Intron 0.40 TCGA-AZ-6599-01 1 71477886 71477886 A G PTGER3 Intron 0.59 TCGA-AZ-6599-01 1 71546661 71546661 G A ZRANB2 Silent p.F6F 0.29 TCGA-AZ-6599-01 1 78184290 78184290 G A USP33 Silent p.N607N 0.38 TCGA-AZ-6599-01 1 85665972 85665972 G A SYDE2 Silent p.V236V 0.33 TCGA-AZ-6599-01 1 87033282 87033282 C T CLCA4 Missense_Mutation p.T377I 0.39 tolerated(0.06) benign(0.248) TCGA-AZ-6599-01 1 911349 911349 C T C1orf170 3'UTR 0.38 TCGA-AZ-6599-01 1 97771838 97771838 G A DPYD Missense_Mutation p.R692W 0.38 deleterious(0.04) possibly_damaging(0.834) TCGA-AZ-6599-01 20 34542616 34542616 G A SCAND1 5'UTR 0.36 TCGA-AZ-6599-01 20 36760865 36760865 G A TGM2 Silent p.Y551Y 0.32 TCGA-AZ-6599-01 20 43090528 43090528 T C C20orf62 Silent p.E170E 0.10 TCGA-AZ-6599-01 20 43589022 43589022 G A TOMM34 5'UTR 0.33 TCGA-AZ-6599-01 20 44045331 44045331 C T PIGT Missense_Mutation p.T121I 0.18 tolerated(0.13) benign(0.016) TCGA-AZ-6599-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.31 deleterious(0.01) probably_damaging(1) TCGA-AZ-6599-01 21 47538567 47538567 G A COL6A2 Missense_Mutation p.E386K 0.41 tolerated(0.83) benign(0.049) TCGA-AZ-6599-01 22 18301127 18301127 A G MICAL3 Missense_Mutation p.S1434P 0.45 probably_damaging(0.996) TCGA-AZ-6599-01 22 18899428 18899428 G A DGCR6 3'UTR 0.52 TCGA-AZ-6599-01 22 18899429 18899429 G A DGCR6 3'UTR 0.52 TCGA-AZ-6599-01 22 24376501 24376501 C T GSTT1 Silent p.L215L 0.69 TCGA-AZ-6599-01 22 31003247 31003247 G A TCN2 5'UTR 0.37 TCGA-AZ-6599-01 22 35719618 35719618 C T TOM1 Nonsense_Mutation p.Q166* 0.31 TCGA-AZ-6599-01 22 39417463 39417463 G T APOBEC3D 5'UTR 0.48 TCGA-AZ-6599-01 22 50941933 50941933 C T LMF2 Missense_Mutation p.G671R 0.07 tolerated(0.49) benign(0) TCGA-AZ-6599-01 2 112873658 112873658 C A TMEM87B Intron 0.13 TCGA-AZ-6599-01 2 133541011 133541011 C T NCKAP5 Missense_Mutation p.A1125T 0.07 tolerated(0.38) benign(0) TCGA-AZ-6599-01 2 144903214 144903214 T C GTDC1 Missense_Mutation p.E91G 0.10 deleterious(0) probably_damaging(0.998) TCGA-AZ-6599-01 2 172016998 172016998 G A TLK1 5'UTR 0.14 TCGA-AZ-6599-01 2 178977410 178977410 C T RBM45 Missense_Mutation p.S46L 0.38 tolerated(0.06) possibly_damaging(0.639) TCGA-AZ-6599-01 2 179422647 179422647 A T TTN Missense_Mutation p.V29145D 0.50 TCGA-AZ-6599-01 2 179580332 179580332 C T TTN Silent p.S8603S 0.10 TCGA-AZ-6599-01 2 207558028 207558028 G T DYTN Missense_Mutation p.T284K 0.41 deleterious(0.03) benign(0.424) TCGA-AZ-6599-01 2 208611930 208611930 G A CCNYL1 Missense_Mutation p.E216K 0.36 tolerated(0.16) benign(0.02) TCGA-AZ-6599-01 2 216213862 216213874 GAGTTACTCACTG - ATIC Frame_Shift_Del p.E517Rfs*11 0.30 TCGA-AZ-6599-01 2 219616465 219616465 C T TTLL4 Missense_Mutation p.P971L 0.39 tolerated(0.13) benign(0.002) TCGA-AZ-6599-01 2 219757514 219757514 C T WNT10A Missense_Mutation p.R259W 0.33 deleterious(0) possibly_damaging(0.828) TCGA-AZ-6599-01 2 220379286 220379286 C T ASIC4 Missense_Mutation p.S74F 0.32 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-AZ-6599-01 2 232975937 232975937 G A DIS3L2 Intron 0.31 TCGA-AZ-6599-01 2 233897447 233897447 C T NEU2 Silent p.I22I 0.30 TCGA-AZ-6599-01 2 234073071 234073071 G A INPP5D Splice_Site p.X507_splice 0.31 TCGA-AZ-6599-01 2 239079165 239079165 G A ILKAP 3'UTR 0.43 TCGA-AZ-6599-01 2 240984990 240984990 G A OR6B3 Missense_Mutation p.T167M 0.39 deleterious(0.03) benign(0.105) TCGA-AZ-6599-01 2 24300581 24300581 G A TP53I3 Silent p.F289F 0.32 TCGA-AZ-6599-01 2 24300592 24300592 G A TP53I3 Silent p.L286L 0.33 TCGA-AZ-6599-01 2 27595957 27595957 G A SNX17 Intron 0.30 TCGA-AZ-6599-01 2 39088950 39088950 G A DHX57 Missense_Mutation p.A201V 0.11 tolerated(0.18) benign(0.004) TCGA-AZ-6599-01 2 44001230 44001230 G A DYNC2LI1 5'UTR 0.34 TCGA-AZ-6599-01 2 54558080 54558080 G A C2orf73 5'UTR 0.48 TCGA-AZ-6599-01 2 73052976 73052976 G A EXOC6B Silent p.L22L 0.32 TCGA-AZ-6599-01 2 74756732 74756732 G A AUP1 Missense_Mutation p.P9S 0.08 deleterious(0.03) possibly_damaging(0.718) TCGA-AZ-6599-01 3 100275683 100275683 C T TMEM45A Silent p.L90L 0.33 TCGA-AZ-6599-01 3 10183685 10183685 G A VHL Missense_Mutation p.E52K 0.33 tolerated(0.15) benign(0.292) TCGA-AZ-6599-01 3 126261495 126261495 C T CHST13 3'UTR 0.38 TCGA-AZ-6599-01 3 129155742 129155742 C T MBD4 Missense_Mutation p.G249R 0.08 tolerated(0.79) benign(0.001) TCGA-AZ-6599-01 3 149042806 149042806 G T TM4SF18 Missense_Mutation p.L91M 0.30 tolerated(0.09) benign(0.11) TCGA-AZ-6599-01 3 15300250 15300250 C T SH3BP5 Intron 0.38 TCGA-AZ-6599-01 3 170908570 170908570 T C TNIK Missense_Mutation p.S142G 0.40 deleterious(0) unknown(0) TCGA-AZ-6599-01 3 180328335 180328335 C T TTC14 3'UTR 0.33 TCGA-AZ-6599-01 3 196730797 196730797 C T MFI2 Missense_Mutation p.M704I 0.34 tolerated(0.2) benign(0.008) TCGA-AZ-6599-01 3 21706422 21706422 G T ZNF385D Missense_Mutation p.L41I 0.52 tolerated(0.11) possibly_damaging(0.899) TCGA-AZ-6599-01 3 32148151 32148151 G A GPD1L 5'UTR 0.44 TCGA-AZ-6599-01 3 32148152 32148152 G A GPD1L 5'UTR 0.44 TCGA-AZ-6599-01 3 32571975 32571975 T C DYNC1LI1 Missense_Mutation p.Q373R 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-6599-01 3 32612276 32612276 C T DYNC1LI1 5'UTR 0.42 TCGA-AZ-6599-01 3 45943177 45943177 C T CCR9 Silent p.F299F 0.32 TCGA-AZ-6599-01 3 48646672 48646672 C T UQCRC1 Missense_Mutation p.V45M 0.44 tolerated(0.14) benign(0.092) TCGA-AZ-6599-01 3 48955911 48955911 C T ARIH2OS Silent p.P224P 0.37 TCGA-AZ-6599-01 3 52439898 52439898 G A BAP1 Nonsense_Mutation p.Q272* 0.31 TCGA-AZ-6599-01 3 52720128 52720128 G A GNL3 Intron 0.34 TCGA-AZ-6599-01 3 96962930 96962930 G C EPHA6 Missense_Mutation p.D469H 0.11 tolerated(0.08) possibly_damaging(0.652) TCGA-AZ-6599-01 3 9854789 9854789 G A TTLL3 Missense_Mutation p.E214K 0.35 tolerated(0.17) benign(0.076) TCGA-AZ-6599-01 4 1066718 1066718 G A RNF212 Missense_Mutation p.P280S 0.32 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-AZ-6599-01 4 123107313 123107313 C T KIAA1109 Missense_Mutation p.P161S 0.38 benign(0.003) TCGA-AZ-6599-01 4 129208525 129208525 C T PGRMC2 Intron 0.37 TCGA-AZ-6599-01 4 139163057 139163057 G A SLC7A11 Missense_Mutation p.T56I 0.30 deleterious(0.02) possibly_damaging(0.708) TCGA-AZ-6599-01 4 140217071 140217071 C T NDUFC1 5'UTR 0.55 TCGA-AZ-6599-01 4 141555273 141555273 G A TBC1D9 Missense_Mutation p.P859S 0.31 tolerated(0.09) probably_damaging(0.998) TCGA-AZ-6599-01 4 173961312 173961312 C T GALNTL6 3'UTR 0.35 TCGA-AZ-6599-01 4 17528721 17528721 C T CLRN2 3'UTR 0.31 TCGA-AZ-6599-01 4 2254239 2254239 G A MXD4 Missense_Mutation p.L69F 0.35 deleterious(0) probably_damaging(0.972) TCGA-AZ-6599-01 4 26322409 26322409 G A RBPJ Missense_Mutation p.E11K 0.20 tolerated_low_confidence(0.48) unknown(0) TCGA-AZ-6599-01 4 54930508 54930508 C T CHIC2 5'UTR 0.39 TCGA-AZ-6599-01 4 57843728 57843728 G A NOA1 Silent p.F8F 0.36 TCGA-AZ-6599-01 4 79340158 79340158 C T FRAS1 Missense_Mutation p.S1494F 0.40 possibly_damaging(0.602) TCGA-AZ-6599-01 4 79697857 79697857 G A BMP2K Missense_Mutation p.E54K 0.30 deleterious(0) probably_damaging(0.995) TCGA-AZ-6599-01 4 84406193 84406193 C T FAM175A Silent p.S11S 0.38 TCGA-AZ-6599-01 4 84406201 84406201 C T FAM175A Missense_Mutation p.V9M 0.36 tolerated(0.26) benign(0.048) TCGA-AZ-6599-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.80 TCGA-AZ-6599-01 5 121297701 121297701 G A SRFBP1 5'UTR 0.43 TCGA-AZ-6599-01 5 140012799 140012799 G A CD14 5'UTR 0.55 TCGA-AZ-6599-01 5 140084017 140084017 G A ZMAT2 Missense_Mutation p.R106K 0.38 tolerated(0.11) benign(0.016) TCGA-AZ-6599-01 5 140242962 140242962 G A AC005609.1 Missense_Mutation p.S5L 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.519) TCGA-AZ-6599-01 5 140774183 140774183 C T PCDHGA8 Silent p.N601N 0.34 TCGA-AZ-6599-01 5 141018364 141018364 G A RELL2 Missense_Mutation p.E63K 0.35 tolerated(0.12) benign(0.079) TCGA-AZ-6599-01 5 160047920 160047920 G A ATP10B Missense_Mutation p.S617F 0.35 deleterious(0.03) probably_damaging(0.987) TCGA-AZ-6599-01 5 16666659 16666659 G A MYO10 3'UTR 0.42 TCGA-AZ-6599-01 5 170847193 170847193 C T FGF18 5'UTR 0.38 TCGA-AZ-6599-01 5 178549753 178549753 C T ADAMTS2 Missense_Mutation p.G994S 0.31 deleterious(0.01) probably_damaging(1) TCGA-AZ-6599-01 5 179285777 179285777 G A C5orf45 Missense_Mutation p.S7F 0.41 tolerated(0.43) unknown(0) TCGA-AZ-6599-01 5 41153918 41153918 C T C6 Missense_Mutation p.E762K 0.29 tolerated(0.24) benign(0.017) TCGA-AZ-6599-01 5 42719483 42719483 G A GHR Missense_Mutation p.C625Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-AZ-6599-01 5 54603469 54603469 C T DHX29 5'UTR 0.30 TCGA-AZ-6599-01 5 54603478 54603478 C T DHX29 5'UTR 0.29 TCGA-AZ-6599-01 5 65440327 65440327 C T SREK1 Silent p.F41F 0.39 TCGA-AZ-6599-01 5 76028436 76028441 TGAAAA - F2R In_Frame_Del p.M131_K132del 0.30 TCGA-AZ-6599-01 5 80555031 80555033 ACT - CKMT2 In_Frame_Del p.L325del 0.39 TCGA-AZ-6599-01 5 90086949 90086949 C T GPR98 Missense_Mutation p.S4768L 0.28 benign(0.016) TCGA-AZ-6599-01 6 100016550 100016550 G A CCNC 5'UTR 0.40 TCGA-AZ-6599-01 6 110714029 110714029 C T DDO Silent p.V353V 0.32 TCGA-AZ-6599-01 6 112512888 112512888 C T LAMA4 Missense_Mutation p.R223H 0.27 tolerated(0.06) benign(0.064) TCGA-AZ-6599-01 6 117073800 117073800 C T FAM162B Missense_Mutation p.R150H 0.08 deleterious(0.04) unknown(0) TCGA-AZ-6599-01 6 121770798 121770798 G T GJA1 3'UTR 0.06 TCGA-AZ-6599-01 6 139094923 139094923 C T CCDC28A Missense_Mutation p.R38W 0.38 tolerated_low_confidence(0.1) benign(0) TCGA-AZ-6599-01 6 152557247 152557247 C T SYNE1 Nonsense_Mutation p.W6797* 0.07 TCGA-AZ-6599-01 6 168294541 168294541 G A MLLT4 Splice_Site p.X393_splice 0.39 TCGA-AZ-6599-01 6 25092165 25092165 A G CMAHP RNA 0.10 TCGA-AZ-6599-01 6 26021111 26021111 C T HIST1H3A Missense_Mutation p.R132C 0.30 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-AZ-6599-01 6 26027300 26027300 C T HIST1H4B Missense_Mutation p.V61M 0.36 deleterious(0) possibly_damaging(0.781) TCGA-AZ-6599-01 6 26197444 26197444 G A HIST1H3D Missense_Mutation p.T12M 0.34 deleterious_low_confidence(0) benign(0.041) TCGA-AZ-6599-01 6 27100190 27100190 C T HIST1H2BJ Missense_Mutation p.E114K 0.20 tolerated_low_confidence(0.07) benign(0.071) TCGA-AZ-6599-01 6 27775387 27775387 G A HIST1H2BL Missense_Mutation p.R100C 0.33 tolerated_low_confidence(0.08) benign(0.001) TCGA-AZ-6599-01 6 30646989 30646989 G A PPP1R18 Nonsense_Mutation p.Q597* 0.43 TCGA-AZ-6599-01 6 30646990 30646990 G A PPP1R18 Silent p.L596L 0.41 TCGA-AZ-6599-01 6 32154103 32154103 G A PBX2 3'UTR 0.08 TCGA-AZ-6599-01 6 36178238 36178238 C T BRPF3 Silent p.P704P 0.35 TCGA-AZ-6599-01 6 36474381 36474381 C G STK38 Missense_Mutation p.W271C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-6599-01 6 43603591 43603591 G A MAD2L1BP Intron 0.40 TCGA-AZ-6599-01 6 53409293 53409293 C T GCLC Splice_Site p.X50_splice 0.38 TCGA-AZ-6599-01 6 56376096 56376096 G A DST Nonsense_Mutation p.Q3604* 0.34 TCGA-AZ-6599-01 6 79577216 79577216 C T IRAK1BP1 5'UTR 0.25 TCGA-AZ-6599-01 6 84798955 84798955 C T MRAP2 Missense_Mutation p.R125C 0.33 deleterious(0.02) benign(0.401) TCGA-AZ-6599-01 6 91296554 91296554 C T MAP3K7 Missense_Mutation p.E17K 0.48 tolerated_low_confidence(0.15) benign(0.101) TCGA-AZ-6599-01 7 127983949 127983949 G A RBM28 5'UTR 0.36 TCGA-AZ-6599-01 7 129122992 129122992 A G STRIP2 Intron 0.08 TCGA-AZ-6599-01 7 142997082 142997082 G A CASP2 Missense_Mutation p.V272M 0.39 deleterious(0) probably_damaging(0.996) TCGA-AZ-6599-01 7 149485918 149485920 AGA - SSPO RNA 0.32 TCGA-AZ-6599-01 7 150499382 150499382 C T TMEM176A Missense_Mutation p.T85I 0.30 tolerated(0.44) benign(0.234) TCGA-AZ-6599-01 7 150499385 150499385 C T TMEM176A Missense_Mutation p.S86L 0.29 tolerated(0.06) benign(0.132) TCGA-AZ-6599-01 7 154720313 154720313 C T PAXIP1-AS2 5'UTR 0.38 TCGA-AZ-6599-01 7 17362157 17362157 G A AHR Missense_Mutation p.G96R 0.38 deleterious(0.05) benign(0.017) TCGA-AZ-6599-01 7 43601544 43601544 G A HECW1 3'UTR 0.36 TCGA-AZ-6599-01 7 44047062 44047062 C T SPDYE1 Silent p.R276R 0.06 TCGA-AZ-6599-01 7 55260510 55260510 C T EGFR Missense_Mutation p.H893Y 0.36 deleterious(0) probably_damaging(1) TCGA-AZ-6599-01 7 57528687 57528687 A T ZNF716 Nonsense_Mutation p.R174* 0.09 TCGA-AZ-6599-01 7 6487523 6487523 C T DAGLB 5'UTR 0.31 TCGA-AZ-6599-01 7 6537818 6537818 G A GRID2IP Silent p.D1147D 0.41 TCGA-AZ-6599-01 7 6662299 6662299 C T ZNF853 Silent p.H559H 0.37 TCGA-AZ-6599-01 7 73474366 73474366 G A ELN Missense_Mutation p.G522D 0.41 unknown(0) TCGA-AZ-6599-01 7 75609790 75609790 C T POR Missense_Mutation p.S167F 0.35 deleterious(0) possibly_damaging(0.806) TCGA-AZ-6599-01 7 82583118 82583118 G A PCLO Missense_Mutation p.S2384F 0.43 unknown(0) TCGA-AZ-6599-01 7 82785600 82785600 G A PCLO Silent p.F119F 0.38 TCGA-AZ-6599-01 7 86415945 86415945 C T GRM3 Silent p.D279D 0.27 TCGA-AZ-6599-01 7 872165 872165 G A SUN1 Missense_Mutation p.D2N 0.36 deleterious(0) probably_damaging(0.984) TCGA-AZ-6599-01 7 94294353 94294353 C T PEG10 3'UTR 0.42 TCGA-AZ-6599-01 7 98990442 98990442 C T ARPC1B Missense_Mutation p.S311F 0.44 deleterious(0.01) possibly_damaging(0.694) TCGA-AZ-6599-01 7 99687015 99687015 C T COPS6 Missense_Mutation p.S60F 0.37 deleterious(0) possibly_damaging(0.722) TCGA-AZ-6599-01 8 110631117 110631117 C T SYBU Silent p.Q127Q 0.38 TCGA-AZ-6599-01 8 121296005 121296005 G T COL14A1 Missense_Mutation p.V1319F 0.35 deleterious(0) benign(0.311) TCGA-AZ-6599-01 8 13356743 13356743 G A DLC1 Nonsense_Mutation p.Q280* 0.41 TCGA-AZ-6599-01 8 134062174 134062174 C T SLA Missense_Mutation p.G114E 0.33 tolerated(0.3) benign(0.201) TCGA-AZ-6599-01 8 145616596 145616596 G A ADCK5 Silent p.G240G 0.26 TCGA-AZ-6599-01 8 145700588 145700588 C T FOXH1 Nonsense_Mutation p.W77* 0.35 TCGA-AZ-6599-01 8 145726614 145726614 G A PPP1R16A Silent p.P380P 0.31 TCGA-AZ-6599-01 8 19250897 19250897 C T SH2D4A Nonsense_Mutation p.R373* 0.31 TCGA-AZ-6599-01 8 30546693 30546693 C T GSR Silent p.L342L 0.35 TCGA-AZ-6599-01 8 64098866 64098866 C A YTHDF3 Missense_Mutation p.H98Q 0.38 deleterious(0.01) probably_damaging(0.963) TCGA-AZ-6599-01 8 64098995 64098995 G T YTHDF3 Missense_Mutation p.Q141H 0.42 tolerated(0.1) benign(0.214) TCGA-AZ-6599-01 8 82644771 82644771 G A CHMP4C 5'UTR 0.21 TCGA-AZ-6599-01 8 93017213 93017213 G A RUNX1T1 Intron 0.30 TCGA-AZ-6599-01 8 95683798 95683798 G A ESRP1 Missense_Mutation p.G451S 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-6599-01 8 9912157 9912157 C T MSRA Missense_Mutation p.T44I 0.37 tolerated(0.92) benign(0) TCGA-AZ-6599-01 9 104171473 104171473 C T ZNF189 Nonsense_Mutation p.Q475* 0.42 TCGA-AZ-6599-01 9 107555517 107555517 G A ABCA1 Silent p.A1857A 0.44 TCGA-AZ-6599-01 9 117825357 117825357 T C TNC Missense_Mutation p.Q1291R 0.51 tolerated(0.8) benign(0.006) TCGA-AZ-6599-01 9 126139321 126139321 C T CRB2 Missense_Mutation p.P1280S 0.34 deleterious(0) possibly_damaging(0.901) TCGA-AZ-6599-01 9 130477774 130477774 C T C9orf117 3'Flank 0.08 TCGA-AZ-6599-01 9 131038561 131038561 C T SWI5 Missense_Mutation p.T46I 0.39 tolerated_low_confidence(0.12) benign(0.001) TCGA-AZ-6599-01 9 134367591 134367591 C T PRRC2B Silent p.A2139A 0.41 TCGA-AZ-6599-01 9 136315050 136315050 C T ADAMTS13 Missense_Mutation p.P1003L 0.54 tolerated(0.06) benign(0.048) TCGA-AZ-6599-01 9 139735419 139735419 G A RABL6 3'UTR 0.38 TCGA-AZ-6599-01 9 140108508 140108508 C T NDOR1 Missense_Mutation p.P167L 0.46 deleterious(0.05) benign(0.078) TCGA-AZ-6599-01 9 21077458 21077458 G A IFNB1 Silent p.L137L 0.38 TCGA-AZ-6599-01 9 214817 214817 G A C9orf66 Missense_Mutation p.P194S 0.43 tolerated_low_confidence(0.09) possibly_damaging(0.803) TCGA-AZ-6599-01 9 25677715 25677715 G A TUSC1 Missense_Mutation p.S202F 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-AZ-6599-01 9 5549550 5549550 G A PDCD1LG2 Missense_Mutation p.V193M 0.27 tolerated(0.16) benign(0.11) TCGA-AZ-6599-01 9 6413561 6413561 C T UHRF2 Missense_Mutation p.T24M 0.49 deleterious(0.03) possibly_damaging(0.873) TCGA-AZ-6599-01 9 70177770 70177770 C T FOXD4L5 Missense_Mutation p.E72K 0.23 tolerated(0.14) possibly_damaging(0.899) TCGA-AZ-6599-01 9 79239396 79239396 C T PRUNE2 Missense_Mutation p.E3054K 0.29 deleterious(0.02) benign(0.097) TCGA-AZ-6599-01 9 95277369 95277369 C T ECM2 Missense_Mutation p.V200M 0.38 tolerated(0.08) benign(0.073) TCGA-AZ-6599-01 9 97063194 97063194 C T ZNF169 Missense_Mutation p.H452Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-AZ-6599-01 9 97063196 97063196 C T ZNF169 Silent p.H452H 0.33 TCGA-AZ-6599-01 9 97063280 97063280 C T ZNF169 Silent p.H480H 0.47 TCGA-AZ-6599-01 9 97063282 97063282 C T ZNF169 Missense_Mutation p.T481I 0.46 deleterious(0) probably_damaging(0.981) TCGA-AZ-6599-01 9 97401505 97401505 C T FBP1 Missense_Mutation p.E30K 0.40 deleterious(0) benign(0.298) TCGA-AZ-6599-01 X 101821668 101821668 G A NXF4 Intron 0.42 TCGA-AZ-6599-01 X 119602990 119602990 G A LAMP2 Missense_Mutation p.S12L 0.76 tolerated(0.19) benign(0.001) TCGA-AZ-6599-01 X 140969575 140969575 C T MAGEC3 Missense_Mutation p.A301V 0.71 tolerated(0.5) possibly_damaging(0.787) TCGA-AZ-6599-01 X 43515510 43515510 G A MAOA 5'UTR 0.67 TCGA-AZ-6599-01 X 47034427 47034427 G - RBM10 Frame_Shift_Del p.G172Afs*94 0.51 TCGA-AZ-6599-01 X 54159140 54159140 G A FAM120C Missense_Mutation p.R683W 0.14 deleterious(0) probably_damaging(0.911) TCGA-AZ-6599-01 X 54989723 54989723 G A PFKFB1 Nonsense_Mutation p.R64* 0.83 TCGA-AZ-6599-01 X 7267957 7267957 C T STS Silent p.F469F 0.68 TCGA-AZ-6599-01 X 7267969 7267969 C T STS Silent p.F473F 0.69 TCGA-AZ-6600-01 10 49658846 49658846 C T ARHGAP22 Silent p.P458P 0.37 TCGA-AZ-6600-01 10 50081652 50081652 G T WDFY4 Missense_Mutation p.W2286C 0.15 deleterious(0) probably_damaging(0.999) TCGA-AZ-6600-01 10 50530622 50530622 C T C10orf71 Missense_Mutation p.A11V 0.09 deleterious(0) benign(0.036) TCGA-AZ-6600-01 10 51769961 51769961 G A AGAP6 3'UTR 0.28 TCGA-AZ-6600-01 10 6527188 6527188 G A PRKCQ Missense_Mutation p.P315L 0.15 tolerated(0.05) benign(0.312) TCGA-AZ-6600-01 10 73472448 73472448 A C C10orf105 3'UTR 0.23 TCGA-AZ-6600-01 10 73472449 73472449 C T C10orf105 3'UTR 0.23 TCGA-AZ-6600-01 10 7860745 7860745 T G TAF3 Missense_Mutation p.S25A 0.10 tolerated(0.63) benign(0.145) TCGA-AZ-6600-01 10 92508733 92508733 G T HTR7 Missense_Mutation p.F386L 0.23 tolerated(0.23) benign(0.162) TCGA-AZ-6600-01 11 117332232 117332232 G A DSCAML1 Missense_Mutation p.R1176C 0.23 deleterious(0) probably_damaging(0.988) TCGA-AZ-6600-01 11 128354731 128354731 C A ETS1 Silent p.G283G 0.19 TCGA-AZ-6600-01 11 4842729 4842729 G A OR51F2 Silent p.Q38Q 0.19 TCGA-AZ-6600-01 11 5080092 5080092 C A OR52E2 Missense_Mutation p.A256S 0.44 tolerated(0.17) possibly_damaging(0.874) TCGA-AZ-6600-01 11 51515398 51515398 A G OR4C46 Silent p.G39G 0.18 TCGA-AZ-6600-01 11 55999683 55999683 C T OR5T2 Missense_Mutation p.V327I 0.23 tolerated(0.93) benign(0.001) TCGA-AZ-6600-01 11 56043714 56043714 T G OR5T1 Silent p.S200S 0.06 TCGA-AZ-6600-01 11 59271442 59271442 T A OR4D11 Missense_Mutation p.Y132N 0.49 deleterious(0) possibly_damaging(0.842) TCGA-AZ-6600-01 11 71712889 71712889 T A IL18BP Missense_Mutation p.S189R 0.17 tolerated_low_confidence(0.33) benign(0.008) TCGA-AZ-6600-01 11 77383147 77383147 G A RSF1 Nonsense_Mutation p.R1231* 0.20 TCGA-AZ-6600-01 11 88301038 88301038 G A GRM5 Missense_Mutation p.R605C 0.42 deleterious(0.01) probably_damaging(0.939) TCGA-AZ-6600-01 11 95523653 95523653 C T CEP57 5'UTR 0.53 TCGA-AZ-6600-01 12 112638500 112638500 G A HECTD4 Nonsense_Mutation p.R2691* 0.24 TCGA-AZ-6600-01 12 115118902 115118903 - T TBX3 Frame_Shift_Ins p.A147Sfs*13 0.23 TCGA-AZ-6600-01 12 124293406 124293406 T C DNAH10 Missense_Mutation p.I899T 0.21 benign(0.004) TCGA-AZ-6600-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.40 deleterious(0.04) possibly_damaging(0.506) TCGA-AZ-6600-01 12 40012830 40012830 C A ABCD2 Silent p.V196V 0.35 TCGA-AZ-6600-01 12 50186260 50186260 C T NCKAP5L Missense_Mutation p.R1254Q 0.24 tolerated(0.15) benign(0.035) TCGA-AZ-6600-01 12 53873563 53873563 T A PCBP2 3'UTR 0.27 TCGA-AZ-6600-01 12 56417511 56417511 C G IKZF4 Missense_Mutation p.D48E 0.15 tolerated_low_confidence(0.21) benign(0.001) TCGA-AZ-6600-01 12 62861013 62861013 C T MON2 Missense_Mutation p.A9V 0.14 tolerated(0.23) benign(0.074) TCGA-AZ-6600-01 12 6804346 6804346 A G PIANP Intron 0.16 TCGA-AZ-6600-01 13 42742851 42742851 G A DGKH Missense_Mutation p.D422N 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-6600-01 13 52534302 52534302 G T ATP7B Silent p.I701I 0.22 TCGA-AZ-6600-01 13 67799924 67799924 G T PCDH9 Missense_Mutation p.N883K 0.31 tolerated(0.21) probably_damaging(0.919) TCGA-AZ-6600-01 13 72131234 72131234 C G DACH1 Missense_Mutation p.V500L 0.26 benign(0.095) TCGA-AZ-6600-01 14 20404257 20404257 T C OR4K1 Silent p.F144F 0.43 TCGA-AZ-6600-01 14 59819300 59819300 C T DAAM1 Silent p.H749H 0.10 TCGA-AZ-6600-01 14 67817356 67817356 C T ATP6V1D Missense_Mutation p.E71K 0.17 deleterious(0.04) possibly_damaging(0.764) TCGA-AZ-6600-01 14 94100938 94100938 G T UNC79 Nonsense_Mutation p.E1753* 0.13 TCGA-AZ-6600-01 15 67482748 67482748 C G SMAD3 Intron 0.56 TCGA-AZ-6600-01 16 15490022 15490022 C T MPV17L Nonsense_Mutation p.Q90* 0.10 TCGA-AZ-6600-01 16 1995853 1995853 C A RPL3L Missense_Mutation p.V344F 0.34 deleterious(0) probably_damaging(0.97) TCGA-AZ-6600-01 16 28115978 28115978 C T XPO6 Silent p.T945T 0.44 TCGA-AZ-6600-01 16 3025781 3025781 C T PKMYT1 Silent p.A137A 0.27 TCGA-AZ-6600-01 16 68406109 68406109 G A SMPD3 5'UTR 0.25 TCGA-AZ-6600-01 16 71736570 71736570 C G PHLPP2 Missense_Mutation p.D117H 0.23 tolerated(0.05) benign(0.176) TCGA-AZ-6600-01 16 72831986 72831986 T C ZFHX3 Missense_Mutation p.N1532S 0.27 probably_damaging(0.97) TCGA-AZ-6600-01 16 777597 777597 G A HAGHL Missense_Mutation p.V30M 0.40 deleterious(0.01) possibly_damaging(0.872) TCGA-AZ-6600-01 16 777598 777598 T G HAGHL Missense_Mutation p.V30G 0.40 deleterious(0.01) benign(0.407) TCGA-AZ-6600-01 17 16722457 16722457 C A AC022596.6 RNA 0.26 TCGA-AZ-6600-01 17 43580798 43580798 A C LRRC37A4P 3'Flank 0.29 TCGA-AZ-6600-01 17 54554945 54554945 G T ANKFN1 Missense_Mutation p.V627F 0.46 deleterious(0) probably_damaging(0.973) TCGA-AZ-6600-01 17 73265494 73265494 C T MIF4GD Missense_Mutation p.V47I 0.56 tolerated_low_confidence(0.55) benign(0) TCGA-AZ-6600-01 17 7484907 7484907 T C CD68 3'UTR 0.08 TCGA-AZ-6600-01 17 7577505 7577505 T A TP53 Missense_Mutation p.D259V 0.51 deleterious(0.01) probably_damaging(0.991) TCGA-AZ-6600-01 17 79095713 79095713 G A AATK Missense_Mutation p.R675C 0.55 tolerated(0.23) benign(0.004) TCGA-AZ-6600-01 17 79667571 79667571 G A HGS Missense_Mutation p.G653R 0.11 tolerated(0.1) probably_damaging(0.997) TCGA-AZ-6600-01 18 21426433 21426433 C T LAMA3 Missense_Mutation p.R1298C 0.69 probably_damaging(0.969) TCGA-AZ-6600-01 18 45368213 45368213 G T SMAD2 Nonsense_Mutation p.C463* 0.58 TCGA-AZ-6600-01 18 54603029 54603029 G C WDR7 Missense_Mutation p.G1242R 0.51 deleterious(0.01) probably_damaging(1) TCGA-AZ-6600-01 18 65181748 65181748 G T DSEL Missense_Mutation p.A43E 0.23 tolerated_low_confidence(1) possibly_damaging(0.447) TCGA-AZ-6600-01 19 10132598 10132598 T A RDH8 3'UTR 0.50 TCGA-AZ-6600-01 19 12297618 12297618 G A ZNF136 Missense_Mutation p.R142H 0.18 tolerated(0.1) possibly_damaging(0.769) TCGA-AZ-6600-01 19 12461569 12461569 T G ZNF442 Missense_Mutation p.Y277S 0.19 tolerated(0.5) benign(0.011) TCGA-AZ-6600-01 19 1800418 1800418 C G ATP8B3 Missense_Mutation p.V395L 0.28 tolerated(0.48) benign(0.004) TCGA-AZ-6600-01 19 3179690 3179690 G A S1PR4 Silent p.S300S 0.37 TCGA-AZ-6600-01 19 36297626 36297626 G A PRODH2 Missense_Mutation p.P338L 0.23 deleterious(0.03) possibly_damaging(0.71) TCGA-AZ-6600-01 19 56465889 56465889 G A NLRP8 Silent p.S155S 0.40 TCGA-AZ-6600-01 19 56572932 56572932 G A NLRP5 3'UTR 0.20 TCGA-AZ-6600-01 1 109439648 109439648 C G GPSM2 Missense_Mutation p.F73L 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-6600-01 1 180832843 180832843 G A XPR1 Splice_Site p.X501_splice 0.19 TCGA-AZ-6600-01 1 201798448 201798448 G C IPO9 Missense_Mutation p.Q37H 0.18 tolerated(1) benign(0) TCGA-AZ-6600-01 1 207741266 207741266 C T CR1 Silent p.C1350C 0.09 TCGA-AZ-6600-01 1 207793399 207793428 AATGTACCTCTCGTAAGTGCAAGTGCAAGG - CR1 Splice_Site p.X2416_splice 0.42 TCGA-AZ-6600-01 1 214557804 214557804 G A PTPN14 Missense_Mutation p.S465F 0.21 deleterious(0) probably_damaging(0.998) TCGA-AZ-6600-01 1 230907770 230907770 G A CAPN9 Missense_Mutation p.R267Q 0.15 tolerated(0.27) benign(0.009) TCGA-AZ-6600-01 1 237821304 237821304 C A RYR2 Missense_Mutation p.D2730E 0.14 benign(0.035) TCGA-AZ-6600-01 1 247902814 247902814 A G OR14K1 Missense_Mutation p.S300G 0.13 tolerated(0.61) benign(0.001) TCGA-AZ-6600-01 1 36786720 36786720 A G SH3D21 Missense_Mutation p.T755A 0.18 deleterious(0) probably_damaging(0.998) TCGA-AZ-6600-01 1 37949174 37949174 G A ZC3H12A Missense_Mutation p.E588K 0.13 tolerated(0.11) benign(0.135) TCGA-AZ-6600-01 1 45092016 45092016 G A RNF220 Silent p.T284T 0.21 TCGA-AZ-6600-01 1 70257750 70257750 C T LRRC7 Nonsense_Mutation p.R72* 0.40 TCGA-AZ-6600-01 1 984306 984306 C A AGRN Missense_Mutation p.R1389S 0.23 tolerated(0.27) benign(0.199) TCGA-AZ-6600-01 20 1424438 1424438 C A NSFL1C Nonsense_Mutation p.E359* 0.21 TCGA-AZ-6600-01 20 25269059 25269059 A T PYGB Splice_Site p.X590_splice 0.49 TCGA-AZ-6600-01 20 33296590 33296590 C G TP53INP2 Missense_Mutation p.P16R 0.15 deleterious(0.02) possibly_damaging(0.534) TCGA-AZ-6600-01 20 33969722 33969722 C T UQCC1 Nonsense_Mutation p.W111* 0.39 TCGA-AZ-6600-01 20 58348374 58348374 C T PHACTR3 Silent p.A264A 0.31 TCGA-AZ-6600-01 21 27264065 27264065 T A APP Missense_Mutation p.Q727L 0.32 deleterious(0.03) benign(0.398) TCGA-AZ-6600-01 21 28338148 28338148 C T ADAMTS5 Missense_Mutation p.R188Q 0.14 tolerated(0.35) benign(0.007) TCGA-AZ-6600-01 21 31864073 31864073 C T KRTAP19-3 Missense_Mutation p.R68H 0.23 tolerated_low_confidence(0.39) unknown(0) TCGA-AZ-6600-01 21 41137564 41137564 T C IGSF5 Missense_Mutation p.L68P 0.17 deleterious(0) probably_damaging(0.997) TCGA-AZ-6600-01 22 38120928 38120928 G T TRIOBP Missense_Mutation p.D789Y 0.52 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-AZ-6600-01 2 133402909 133402909 G A GPR39 Silent p.S364S 0.12 TCGA-AZ-6600-01 2 149226442 149226443 - A MBD5 Frame_Shift_Ins p.P313Tfs*4 0.28 TCGA-AZ-6600-01 2 152470797 152470797 T C NEB Missense_Mutation p.Q3865R 0.10 probably_damaging(0.996) TCGA-AZ-6600-01 2 175213290 175213290 T A CIR1 Nonsense_Mutation p.R430* 0.20 TCGA-AZ-6600-01 2 185800534 185800534 C T ZNF804A Silent p.F137F 0.46 TCGA-AZ-6600-01 2 1926974 1926974 G T MYT1L Missense_Mutation p.N189K 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-6600-01 2 218683471 218683471 C A TNS1 Missense_Mutation p.G1091V 0.30 tolerated(0.51) benign(0.128) TCGA-AZ-6600-01 2 224849621 224849621 C A SERPINE2 Silent p.L256L 0.33 TCGA-AZ-6600-01 2 232577696 232577696 C T PTMA 3'UTR 0.13 TCGA-AZ-6600-01 2 25095546 25095546 C T ADCY3 Missense_Mutation p.G240S 0.41 deleterious(0.01) probably_damaging(1) TCGA-AZ-6600-01 2 29293603 29293603 C T C2orf71 Silent p.S1175S 0.13 TCGA-AZ-6600-01 2 53977952 53977952 G C ASB3 Missense_Mutation p.T143S 0.18 tolerated(0.68) benign(0.068) TCGA-AZ-6600-01 2 85857906 85857906 C T USP39 Silent p.I262I 0.09 TCGA-AZ-6600-01 2 97297251 97297251 A C KANSL3 Intron 0.41 TCGA-AZ-6600-01 3 150387174 150387174 C T FAM194A Missense_Mutation p.V470I 0.19 tolerated(0.42) benign(0.067) TCGA-AZ-6600-01 3 154858006 154858006 T A MME Missense_Mutation p.N294K 0.11 tolerated(0.08) benign(0.358) TCGA-AZ-6600-01 3 171177844 171177844 G A TNIK Silent p.S3S 0.17 TCGA-AZ-6600-01 3 178546013 178546013 C T KCNMB2 Missense_Mutation p.T92M 0.29 tolerated(0.59) probably_damaging(0.963) TCGA-AZ-6600-01 3 183860336 183860336 G C EIF2B5 Missense_Mutation p.W497C 0.26 tolerated(0.07) possibly_damaging(0.902) TCGA-AZ-6600-01 3 37365606 37365606 C T GOLGA4 Silent p.H765H 0.23 TCGA-AZ-6600-01 3 38962717 38962717 G A SCN11A Missense_Mutation p.R248C 0.23 deleterious(0) probably_damaging(0.91) TCGA-AZ-6600-01 3 49012284 49012284 G T ARIH2 Missense_Mutation p.G308V 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6600-01 3 55508499 55508499 C T WNT5A Missense_Mutation p.D184N 0.22 deleterious(0) probably_damaging(0.959) TCGA-AZ-6600-01 3 57232242 57232242 T A HESX1 Missense_Mutation p.T181S 0.24 tolerated_low_confidence(0.68) benign(0.002) TCGA-AZ-6600-01 3 77147475 77147475 G A ROBO2 Silent p.A140A 0.11 TCGA-AZ-6600-01 3 97852457 97852457 A T OR5H1 Nonsense_Mutation p.K306* 0.27 TCGA-AZ-6600-01 4 111398151 111398151 G A ENPEP Missense_Mutation p.G194D 0.11 deleterious(0) probably_damaging(0.991) TCGA-AZ-6600-01 4 126238574 126238574 C T FAT4 Silent p.R336R 0.34 TCGA-AZ-6600-01 4 155156338 155156338 C T DCHS2 Missense_Mutation p.E2701K 0.15 tolerated(0.08) benign(0.054) TCGA-AZ-6600-01 4 15538665 15538665 C T CC2D2A Missense_Mutation p.S577L 0.22 tolerated(0.21) benign(0.001) TCGA-AZ-6600-01 4 185689311 185689311 A T ACSL1 Intron 0.25 TCGA-AZ-6600-01 4 2952012 2952012 C G NOP14 Intron 0.20 TCGA-AZ-6600-01 5 112173399 112173399 C A APC Missense_Mutation p.A703E 0.32 probably_damaging(1) TCGA-AZ-6600-01 5 112174058 112174058 A T APC Nonsense_Mutation p.R923* 0.24 TCGA-AZ-6600-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.36 TCGA-AZ-6600-01 5 112389605 112389605 G A MCC Silent p.D755D 0.44 TCGA-AZ-6600-01 5 139495539 139495539 A T PURA 3'UTR 0.40 TCGA-AZ-6600-01 5 176935464 176935464 C T DOK3 Missense_Mutation p.R105Q 0.28 deleterious(0.04) probably_damaging(0.992) TCGA-AZ-6600-01 5 1879724 1879724 C T IRX4 Silent p.P210P 0.18 TCGA-AZ-6600-01 5 21760728 21760728 G T CDH12 Missense_Mutation p.F524L 0.21 deleterious(0.01) possibly_damaging(0.604) TCGA-AZ-6600-01 5 37048669 37048670 - T NIPBL Frame_Shift_Ins p.L2220Ffs*3 0.15 TCGA-AZ-6600-01 5 476356 476358 CTT - SLC9A3 In_Frame_Del p.K676del 0.42 TCGA-AZ-6600-01 5 52781639 52781639 A G FST Intron 0.22 TCGA-AZ-6600-01 5 71752328 71752328 G A ZNF366 Missense_Mutation p.A476V 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-6600-01 5 80655706 80655706 A C ACOT12 Intron 0.11 TCGA-AZ-6600-01 6 117662747 117662747 C T ROS1 Missense_Mutation p.S1573N 0.52 tolerated(0.17) benign(0.015) TCGA-AZ-6600-01 6 152557361 152557361 G T SYNE1 Silent p.S6759S 0.22 TCGA-AZ-6600-01 6 152557362 152557362 G T SYNE1 Missense_Mutation p.S6759Y 0.22 benign(0.418) TCGA-AZ-6600-01 6 159653823 159653823 G A FNDC1 Missense_Mutation p.R760Q 0.19 tolerated_low_confidence(0.77) unknown(0) TCGA-AZ-6600-01 6 166581187 166581187 G A T 5'UTR 0.25 TCGA-AZ-6600-01 6 24448131 24448131 T C GPLD1 Missense_Mutation p.Y551C 0.18 deleterious(0.01) probably_damaging(0.928) TCGA-AZ-6600-01 6 27107315 27107315 C A HIST1H4I Missense_Mutation p.H76Q 0.37 deleterious(0) probably_damaging(0.989) TCGA-AZ-6600-01 6 30038792 30038792 G A RNF39 3'UTR 0.27 TCGA-AZ-6600-01 6 31612776 31612776 C T BAG6 Missense_Mutation p.R445Q 0.07 deleterious(0) probably_damaging(0.963) TCGA-AZ-6600-01 6 37605964 37605964 T A MDGA1 Intron 0.39 TCGA-AZ-6600-01 6 51889383 51889383 G A PKHD1 Missense_Mutation p.T1742M 0.38 tolerated(0.14) possibly_damaging(0.836) TCGA-AZ-6600-01 6 70942386 70942386 G A COL9A1 Silent p.P801P 0.38 TCGA-AZ-6600-01 6 90360520 90360520 G A MDN1 Missense_Mutation p.A5321V 0.18 unknown(0) TCGA-AZ-6600-01 6 90437577 90437577 G A MDN1 Missense_Mutation p.A1816V 0.08 possibly_damaging(0.643) TCGA-AZ-6600-01 7 100683309 100683309 T G MUC17 Nonsense_Mutation p.L2871* 0.14 TCGA-AZ-6600-01 7 128484220 128484220 C T FLNC Missense_Mutation p.P1031L 0.18 tolerated(0.3) benign(0.044) TCGA-AZ-6600-01 7 142880892 142880892 T C TAS2R39 Silent p.F127F 0.31 TCGA-AZ-6600-01 7 15584458 15584458 A G AGMO Silent p.T116T 0.07 TCGA-AZ-6600-01 7 31378708 31378708 C A NEUROD6 Nonsense_Mutation p.E59* 0.18 TCGA-AZ-6600-01 7 48352664 48352664 A T ABCA13 Missense_Mutation p.T3173S 0.07 benign(0.293) TCGA-AZ-6600-01 7 6213344 6213344 A G CYTH3 Missense_Mutation p.V130A 0.09 deleterious(0) probably_damaging(0.972) TCGA-AZ-6600-01 7 77885833 77885833 G C MAGI2 Missense_Mutation p.L492V 0.38 deleterious(0.01) possibly_damaging(0.447) TCGA-AZ-6600-01 8 104709513 104709513 C T RIMS2 Missense_Mutation p.R126C 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-6600-01 8 113267582 113267582 C A CSMD3 Missense_Mutation p.V3313F 0.06 deleterious(0) possibly_damaging(0.616) TCGA-AZ-6600-01 8 113301642 113301642 T C CSMD3 Missense_Mutation p.T3034A 0.09 tolerated(0.26) benign(0.034) TCGA-AZ-6600-01 8 124664597 124664597 A C KLHL38 Missense_Mutation p.C190W 0.33 deleterious(0.03) benign(0.049) TCGA-AZ-6600-01 8 145111300 145111300 G A OPLAH Silent p.P657P 0.53 TCGA-AZ-6600-01 8 22006031 22006031 C T LGI3 Missense_Mutation p.R430H 0.13 tolerated(0.07) possibly_damaging(0.684) TCGA-AZ-6600-01 8 28209263 28209263 G T ZNF395 Missense_Mutation p.L328M 0.42 tolerated(0.36) benign(0.002) TCGA-AZ-6600-01 8 42234556 42234556 G A DKK4 Missense_Mutation p.A3V 0.15 tolerated(0.56) benign(0.001) TCGA-AZ-6600-01 8 53073986 53073986 G A ST18 Missense_Mutation p.R515C 0.10 deleterious(0.04) benign(0.003) TCGA-AZ-6600-01 8 53852867 53852867 C T NPBWR1 Missense_Mutation p.R134C 0.15 tolerated(0.05) benign(0.185) TCGA-AZ-6600-01 8 87111156 87111156 G A ATP6V0D2 5'UTR 0.57 TCGA-AZ-6600-01 9 100995717 100995717 G C TBC1D2 Silent p.A254A 0.37 TCGA-AZ-6600-01 9 125288894 125288894 G A OR1N1 Nonsense_Mutation p.R227* 0.12 TCGA-AZ-6600-01 9 135932268 135932268 C T GTF3C5 Missense_Mutation p.R463W 0.30 deleterious(0.04) benign(0.013) TCGA-AZ-6600-01 9 137778287 137778287 C A FCN2 Missense_Mutation p.L191I 0.31 deleterious(0) probably_damaging(0.983) TCGA-AZ-6600-01 9 140247218 140247218 C T EXD3 Silent p.P297P 0.23 TCGA-AZ-6600-01 9 21228023 21228023 G C IFNA17 Missense_Mutation p.F50L 0.34 tolerated(0.58) benign(0.011) TCGA-AZ-6600-01 9 32784244 32784244 C T TMEM215 Silent p.L21L 0.32 TCGA-AZ-6600-01 9 36169489 36169489 C A CCIN 5'UTR 0.24 TCGA-AZ-6600-01 9 74312951 74312951 G A TMEM2 Missense_Mutation p.R1183W 0.29 deleterious(0) benign(0.339) TCGA-AZ-6600-01 9 90321850 90321850 C T DAPK1 Silent p.H1288H 0.19 TCGA-AZ-6600-01 9 91610607 91610607 T G C9orf47 3'UTR 0.28 TCGA-AZ-6600-01 X 111095570 111095570 G A TRPC5 Missense_Mutation p.L445F 0.26 tolerated(0.16) probably_damaging(1) TCGA-AZ-6600-01 X 130220361 130220361 C G ARHGAP36 Missense_Mutation p.A447G 0.26 deleterious(0) possibly_damaging(0.827) TCGA-AZ-6600-01 X 151900711 151900711 A G MAGEA12 Silent p.A30A 0.31 TCGA-AZ-6600-01 X 37664265 37664265 G A CYBB Silent p.A386A 0.12 TCGA-AZ-6600-01 X 54959802 54959804 GAG - PFKFB1 3'UTR 0.35 TCGA-AZ-6600-01 Y 16952567 16952567 C T NLGN4Y Missense_Mutation p.R626W 0.46 deleterious(0) probably_damaging(0.988) TCGA-AZ-6601-01 10 101474324 101474324 G T COX15 3'UTR 0.21 TCGA-AZ-6601-01 10 102505972 102505972 C T PAX2 5'UTR 0.23 TCGA-AZ-6601-01 10 103900552 103900552 C T PPRC1 Missense_Mutation p.R763C 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AZ-6601-01 10 104139071 104139071 C T GBF1 Missense_Mutation p.R1508W 0.19 deleterious(0) probably_damaging(0.981) TCGA-AZ-6601-01 10 104184467 104184467 C T CUEDC2 Missense_Mutation p.D53N 0.27 deleterious(0) probably_damaging(0.959) TCGA-AZ-6601-01 10 104866423 104866423 A G NT5C2 Silent p.L72L 0.14 TCGA-AZ-6601-01 10 105048491 105048491 C A INA 3'UTR 0.30 TCGA-AZ-6601-01 10 105154076 105154076 G A USMG5 5'UTR 0.21 TCGA-AZ-6601-01 10 11207632 11207632 T C CELF2 Silent p.P86P 0.11 TCGA-AZ-6601-01 10 114192192 114192192 C T ZDHHC6 Missense_Mutation p.E345K 0.20 deleterious(0.01) possibly_damaging(0.711) TCGA-AZ-6601-01 10 114903763 114903763 C T TCF7L2 Missense_Mutation p.P256L 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 10 116032510 116032510 C T VWA2 Missense_Mutation p.T128M 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 10 118460522 118460522 G T HSPA12A Missense_Mutation p.L125M 0.30 deleterious(0.03) possibly_damaging(0.785) TCGA-AZ-6601-01 10 12070839 12070839 C A UPF2 Missense_Mutation p.Q350H 0.12 deleterious(0.05) probably_damaging(0.95) TCGA-AZ-6601-01 10 12150012 12150012 C T DHTKD1 Nonsense_Mutation p.Q718* 0.22 TCGA-AZ-6601-01 10 12209885 12209885 C T NUDT5 Intron 0.24 TCGA-AZ-6601-01 10 12211361 12211361 C T SEC61A2 3'Flank 0.35 TCGA-AZ-6601-01 10 123549690 123549690 C T ATE1 Missense_Mutation p.E458K 0.17 tolerated(0.82) benign(0.003) TCGA-AZ-6601-01 10 123845210 123845210 C T TACC2 Silent p.P1065P 0.23 TCGA-AZ-6601-01 10 125601890 125601890 T C CPXM2 Missense_Mutation p.T210A 0.20 deleterious(0.01) probably_damaging(0.944) TCGA-AZ-6601-01 10 125651114 125651114 G A CPXM2 Missense_Mutation p.A21V 0.26 tolerated_low_confidence(1) unknown(0) TCGA-AZ-6601-01 10 125769687 125769687 G A CHST15 Missense_Mutation p.A555V 0.24 deleterious(0.04) possibly_damaging(0.709) TCGA-AZ-6601-01 10 125780695 125780695 C T CHST15 Intron 0.11 TCGA-AZ-6601-01 10 126370821 126370821 G A FAM53B Silent p.C87C 0.22 TCGA-AZ-6601-01 10 127464384 127464384 C T MMP21 Missense_Mutation p.A3T 0.25 tolerated_low_confidence(0.59) benign(0.002) TCGA-AZ-6601-01 10 127824185 127824185 T C ADAM12 Silent p.S131S 0.19 TCGA-AZ-6601-01 10 128193400 128193400 C T C10orf90 Silent p.P123P 0.25 TCGA-AZ-6601-01 10 128830433 128830433 G A DOCK1 Silent p.T566T 0.26 TCGA-AZ-6601-01 10 131265559 131265559 T C MGMT Missense_Mutation p.L27S 0.24 tolerated_low_confidence(0.77) benign(0.181) TCGA-AZ-6601-01 10 133758835 133758835 T A PPP2R2D Missense_Mutation p.L200Q 0.19 deleterious(0.03) probably_damaging(0.968) TCGA-AZ-6601-01 10 134012392 134012392 C T DPYSL4 Missense_Mutation p.A243V 0.24 deleterious(0) probably_damaging(0.984) TCGA-AZ-6601-01 10 134158106 134158106 C T LRRC27 Missense_Mutation p.R169W 0.23 deleterious(0) benign(0.336) TCGA-AZ-6601-01 10 134595384 134595384 G A INPP5A Missense_Mutation p.R393Q 0.24 tolerated(0.11) possibly_damaging(0.602) TCGA-AZ-6601-01 10 135024987 135024987 C T KNDC1 Nonsense_Mutation p.Q1324* 0.17 TCGA-AZ-6601-01 10 135122605 135122605 G A ZNF511 Intron 0.16 TCGA-AZ-6601-01 10 13708258 13708258 C T FRMD4A Missense_Mutation p.R481H 0.10 deleterious(0) possibly_damaging(0.833) TCGA-AZ-6601-01 10 13824923 13824923 T C FRMD4A Missense_Mutation p.K128R 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-AZ-6601-01 10 14885501 14885501 C T HSPA14 Intron 0.14 TCGA-AZ-6601-01 10 15089248 15089248 C T OLAH 5'UTR 0.30 TCGA-AZ-6601-01 10 16635456 16635456 C T RSU1 Silent p.P257P 0.22 TCGA-AZ-6601-01 10 16870944 16870945 - A CUBN Frame_Shift_Ins p.V3542Cfs*18 0.16 TCGA-AZ-6601-01 10 18087561 18087561 G A TMEM236 3'UTR 0.54 TCGA-AZ-6601-01 10 18690958 18690958 T C CACNB2 Silent p.L107L 0.25 TCGA-AZ-6601-01 10 20500626 20500626 C T PLXDC2 Nonsense_Mutation p.Q364* 0.09 TCGA-AZ-6601-01 10 23297840 23297840 C A ARMC3 Silent p.A675A 0.20 TCGA-AZ-6601-01 10 23481530 23481530 A G PTF1A Missense_Mutation p.D24G 0.24 deleterious_low_confidence(0) benign(0.441) TCGA-AZ-6601-01 10 25010796 25010796 C A ARHGAP21 Missense_Mutation p.E11D 0.24 tolerated_low_confidence(0.26) benign(0.004) TCGA-AZ-6601-01 10 26409624 26409624 G A MYO3A Missense_Mutation p.S599N 0.20 tolerated(0.07) benign(0.316) TCGA-AZ-6601-01 10 27539001 27539001 G A RP11-85G18.6 RNA 0.19 TCGA-AZ-6601-01 10 29776314 29776314 G A SVIL Intron 0.30 TCGA-AZ-6601-01 10 298397 298397 G A ZMYND11 Missense_Mutation p.R599H 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 10 30915746 30915746 C A LYZL2 Missense_Mutation p.R79S 0.15 tolerated(0.16) possibly_damaging(0.466) TCGA-AZ-6601-01 10 3172017 3172017 G A PFKP Missense_Mutation p.D564N 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-AZ-6601-01 10 32310000 32310000 A G KIF5B Silent p.S718S 0.19 TCGA-AZ-6601-01 10 33515116 33515116 G A NRP1 Silent p.D361D 0.17 TCGA-AZ-6601-01 10 35928666 35928666 C T FZD8 Silent p.T564T 0.30 TCGA-AZ-6601-01 10 35929055 35929055 C T FZD8 Missense_Mutation p.A435T 0.20 tolerated(0.12) possibly_damaging(0.903) TCGA-AZ-6601-01 10 38121240 38121240 C T ZNF248 Missense_Mutation p.G348E 0.14 tolerated(0.06) benign(0.016) TCGA-AZ-6601-01 10 435990 435990 G A DIP2C Missense_Mutation p.T513M 0.30 deleterious(0.03) probably_damaging(0.987) TCGA-AZ-6601-01 10 45939199 45939199 C T ALOX5 Missense_Mutation p.R533W 0.17 deleterious(0.04) possibly_damaging(0.867) TCGA-AZ-6601-01 10 47756708 47756708 C T ANXA8L2 Missense_Mutation p.R208C 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 10 48370436 48370436 C T ZNF488 5'UTR 0.32 TCGA-AZ-6601-01 10 49446126 49446126 G A FRMPD2 Missense_Mutation p.R277W 0.21 tolerated(0.1) benign(0.002) TCGA-AZ-6601-01 10 49634020 49634020 G A MAPK8 Missense_Mutation p.V260I 0.19 tolerated(0.65) benign(0.096) TCGA-AZ-6601-01 10 49998899 49998899 G A WDFY4 Silent p.L1398L 0.17 TCGA-AZ-6601-01 10 50819242 50819242 C T SLC18A3 Silent p.D152D 0.22 TCGA-AZ-6601-01 10 50819888 50819888 G A SLC18A3 Missense_Mutation p.G368S 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-AZ-6601-01 10 51863874 51863874 G A FAM21A Missense_Mutation p.V570I 0.16 tolerated(0.12) benign(0.041) TCGA-AZ-6601-01 10 5204852 5204852 A G AKR1CL1 Silent p.G75G 0.16 TCGA-AZ-6601-01 10 5995158 5995158 G A IL15RA Missense_Mutation p.P235L 0.21 tolerated(0.3) benign(0) TCGA-AZ-6601-01 10 60546781 60546781 C T BICC1 Silent p.T162T 0.21 TCGA-AZ-6601-01 10 61083762 61083762 C T FAM13C Silent p.V143V 0.30 TCGA-AZ-6601-01 10 61833851 61833851 G A ANK3 Missense_Mutation p.A2263V 0.21 benign(0.003) TCGA-AZ-6601-01 10 61834466 61834466 T G ANK3 Missense_Mutation p.K2058T 0.39 benign(0.143) TCGA-AZ-6601-01 10 61834884 61834884 G A ANK3 Silent p.L1919L 0.18 TCGA-AZ-6601-01 10 61868777 61868777 C - ANK3 Frame_Shift_Del p.G995Afs*3 0.10 TCGA-AZ-6601-01 10 62023722 62023722 C T ANK3 Silent p.S190S 0.22 TCGA-AZ-6601-01 10 64136026 64136026 C A ZNF365 Missense_Mutation p.P25Q 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-AZ-6601-01 10 64913296 64913296 G T NRBF2 Missense_Mutation p.R61M 0.25 deleterious(0) probably_damaging(0.976) TCGA-AZ-6601-01 10 68686340 68686340 G T LRRTM3 5'UTR 0.14 TCGA-AZ-6601-01 10 70856875 70856875 C T SRGN Missense_Mutation p.R39C 0.15 tolerated(0.05) benign(0.207) TCGA-AZ-6601-01 10 71008314 71008314 G A HKDC1 Missense_Mutation p.R467Q 0.28 tolerated(0.1) benign(0.01) TCGA-AZ-6601-01 10 71154749 71154749 C T HK1 Missense_Mutation p.R759C 0.33 deleterious(0) probably_damaging(0.991) TCGA-AZ-6601-01 10 7205585 7205585 G A SFMBT2 3'UTR 0.36 TCGA-AZ-6601-01 10 7214079 7214079 G A SFMBT2 Silent p.T731T 0.20 TCGA-AZ-6601-01 10 73337723 73337723 G A CDH23 Missense_Mutation p.R269Q 0.19 deleterious(0.04) probably_damaging(0.969) TCGA-AZ-6601-01 10 73461931 73461931 C A CDH23 Silent p.A442A 0.18 TCGA-AZ-6601-01 10 73462439 73462439 C A CDH23 Silent p.V499V 0.23 TCGA-AZ-6601-01 10 73537448 73537448 C T C10orf54 5'Flank 0.28 TCGA-AZ-6601-01 10 73767767 73767767 C T CHST3 Silent p.D326D 0.18 TCGA-AZ-6601-01 10 74235015 74235015 C T MICU1 Missense_Mutation p.R259H 0.22 deleterious(0) probably_damaging(0.987) TCGA-AZ-6601-01 10 74684020 74684020 G A OIT3 Missense_Mutation p.V329M 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-AZ-6601-01 10 74695458 74695458 C T PLA2G12B Missense_Mutation p.V169M 0.26 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 10 75548512 75548512 C A ZSWIM8 Missense_Mutation p.P98Q 0.21 tolerated(0.08) probably_damaging(0.997) TCGA-AZ-6601-01 10 75553389 75553389 G A ZSWIM8 Missense_Mutation p.S786N 0.07 tolerated(0.08) probably_damaging(0.986) TCGA-AZ-6601-01 10 76788703 76788703 G A KAT6B Missense_Mutation p.G1374E 0.12 benign(0) TCGA-AZ-6601-01 10 77158463 77158463 C A ZNF503 3'UTR 0.37 TCGA-AZ-6601-01 10 8006729 8006729 T A TAF3 Missense_Mutation p.I419N 0.21 deleterious(0.01) possibly_damaging(0.801) TCGA-AZ-6601-01 10 8100391 8100391 T C GATA3 Missense_Mutation p.I122T 0.23 deleterious(0.03) benign(0.339) TCGA-AZ-6601-01 10 82034894 82034894 T C MAT1A Missense_Mutation p.H277R 0.26 deleterious(0.02) benign(0.363) TCGA-AZ-6601-01 10 82276029 82276029 C T TSPAN14 Missense_Mutation p.R231W 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-6601-01 10 860683 860683 G A LARP4B Missense_Mutation p.T643M 0.25 deleterious(0.04) possibly_damaging(0.628) TCGA-AZ-6601-01 10 871770 871770 G A LARP4B Missense_Mutation p.T389M 0.29 deleterious(0) probably_damaging(0.953) TCGA-AZ-6601-01 10 88259617 88259617 G A WAPAL Silent p.S461S 0.08 TCGA-AZ-6601-01 10 90045173 90045173 T C RNLS Missense_Mutation p.N323D 0.44 deleterious(0.03) benign(0.096) TCGA-AZ-6601-01 10 90537956 90537956 G A LIPN Missense_Mutation p.R385Q 0.16 tolerated(0.19) possibly_damaging(0.842) TCGA-AZ-6601-01 10 91498235 91498235 A - KIF20B Frame_Shift_Del p.N1174Tfs*5 0.13 TCGA-AZ-6601-01 10 93024278 93024278 G A PCGF5 Splice_Site p.X221_splice 0.33 TCGA-AZ-6601-01 10 931589 931589 C T LARP4B Missense_Mutation p.A25T 0.27 tolerated_low_confidence(0.09) benign(0.006) TCGA-AZ-6601-01 10 95263009 95263009 C G CEP55 Missense_Mutation p.T108R 0.23 tolerated(0.54) benign(0.002) TCGA-AZ-6601-01 10 95394661 95394661 C A PDE6C Silent p.T422T 0.30 TCGA-AZ-6601-01 10 96997631 96997632 - A PDLIM1 3'UTR 0.17 TCGA-AZ-6601-01 10 97174500 97174500 G T SORBS1 Silent p.G187G 0.15 TCGA-AZ-6601-01 10 97443091 97443091 T - TCTN3 Intron 0.21 TCGA-AZ-6601-01 10 97817687 97817687 C T CCNJ Missense_Mutation p.R281W 0.17 deleterious(0.01) possibly_damaging(0.711) TCGA-AZ-6601-01 10 98092225 98092225 C T DNTT Missense_Mutation p.R411C 0.20 deleterious(0.04) benign(0.001) TCGA-AZ-6601-01 10 99329931 99329931 G A UBTD1 Missense_Mutation p.R112H 0.16 tolerated(0.15) probably_damaging(0.995) TCGA-AZ-6601-01 10 99330105 99330105 C T UBTD1 Missense_Mutation p.T170I 0.30 deleterious(0) possibly_damaging(0.711) TCGA-AZ-6601-01 10 99439563 99439563 C T AVPI1 Missense_Mutation p.A34T 0.21 tolerated(0.12) benign(0.322) TCGA-AZ-6601-01 11 100863619 100863619 C A TMEM133 3'UTR 0.17 TCGA-AZ-6601-01 11 102195745 102195745 G A BIRC3 Missense_Mutation p.E169K 0.19 deleterious(0) possibly_damaging(0.852) TCGA-AZ-6601-01 11 1023621 1023621 C T MUC6 Silent p.T1138T 0.24 TCGA-AZ-6601-01 11 1024103 1024103 C G MUC6 Missense_Mutation p.V1076L 0.29 unknown(0) TCGA-AZ-6601-01 11 102709280 102709280 A G MMP3 Splice_Site p.X410_splice 0.21 TCGA-AZ-6601-01 11 103908452 103908452 G A DDI1 Missense_Mutation p.R301H 0.22 deleterious(0.01) possibly_damaging(0.848) TCGA-AZ-6601-01 11 105850538 105850538 G A GRIA4 3'UTR 0.25 TCGA-AZ-6601-01 11 10781821 10781821 G A CTR9 Missense_Mutation p.V232M 0.15 deleterious(0) benign(0.254) TCGA-AZ-6601-01 11 1101611 1101611 G A MUC2 Missense_Mutation p.E2542K 0.24 unknown(0) TCGA-AZ-6601-01 11 110561304 110561304 G T ARHGAP20 Missense_Mutation p.L52M 0.19 deleterious(0.04) probably_damaging(0.959) TCGA-AZ-6601-01 11 111167831 111167831 A G COLCA1 5'UTR 0.22 TCGA-AZ-6601-01 11 111597587 111597587 A G SIK2 3'UTR 0.16 TCGA-AZ-6601-01 11 113145994 113145994 G A NCAM1 Missense_Mutation p.G870D 0.17 tolerated(0.22) benign(0.002) TCGA-AZ-6601-01 11 114318550 114318550 G A REXO2 Missense_Mutation p.R178H 0.28 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 11 114577568 114577568 G A NXPE2 Silent p.T532T 0.09 TCGA-AZ-6601-01 11 1157852 1157852 G A MUC5AC Missense_Mutation p.V307I 0.24 tolerated(1) benign(0.01) TCGA-AZ-6601-01 11 116691941 116691941 A G APOA4 Missense_Mutation p.L278P 0.13 deleterious(0) probably_damaging(0.979) TCGA-AZ-6601-01 11 117038271 117038271 G A PAFAH1B2 Silent p.S182S 0.25 TCGA-AZ-6601-01 11 117090434 117090434 G A PCSK7 Missense_Mutation p.T399I 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 11 117094861 117094861 G A PCSK7 Silent p.N329N 0.07 TCGA-AZ-6601-01 11 117352692 117352692 C T DSCAML1 Missense_Mutation p.V909I 0.25 tolerated(1) benign(0.002) TCGA-AZ-6601-01 11 117988809 117988809 C T TMPRSS4 3'UTR 0.29 TCGA-AZ-6601-01 11 118498962 118498962 C A PHLDB1 Silent p.R475R 0.27 TCGA-AZ-6601-01 11 118764692 118764692 C T CXCR5 Missense_Mutation p.R147C 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 11 118773098 118773098 G - BCL9L Frame_Shift_Del p.Q452Sfs*11 0.30 TCGA-AZ-6601-01 11 118773233 118773233 G A BCL9L Missense_Mutation p.R407W 0.28 probably_damaging(1) TCGA-AZ-6601-01 11 118948967 118948967 C T VPS11 Missense_Mutation p.P615S 0.13 tolerated(0.6) benign(0.006) TCGA-AZ-6601-01 11 119020868 119020868 G A ABCG4 Missense_Mutation p.E65K 0.24 deleterious(0.03) benign(0.028) TCGA-AZ-6601-01 11 119168163 119168163 G A CBL Silent p.A741A 0.27 TCGA-AZ-6601-01 11 121440880 121440880 C T SORL1 Missense_Mutation p.R1080C 0.27 deleterious(0.02) possibly_damaging(0.67) TCGA-AZ-6601-01 11 122526916 122526916 C T UBASH3B Silent p.R53R 0.22 TCGA-AZ-6601-01 11 123848300 123848300 G A OR10S1 Silent p.T33T 0.19 TCGA-AZ-6601-01 11 123886569 123886569 C T OR10G4 Silent p.C96C 0.21 TCGA-AZ-6601-01 11 124482946 124482946 C T PANX3 Silent p.C84C 0.25 TCGA-AZ-6601-01 11 124743268 124743268 C T ROBO3 Silent p.S533S 0.27 TCGA-AZ-6601-01 11 124958079 124958079 G A SLC37A2 3'UTR 0.22 TCGA-AZ-6601-01 11 1258177 1258177 G T MUC5B Missense_Mutation p.G1027V 0.18 unknown(0) TCGA-AZ-6601-01 11 126176613 126176613 A G DCPS Missense_Mutation p.H117R 0.31 tolerated(0.68) benign(0.001) TCGA-AZ-6601-01 11 1272614 1272614 C T MUC5B Missense_Mutation p.T4835M 0.22 unknown(0) TCGA-AZ-6601-01 11 128781229 128781229 G A KCNJ5 Missense_Mutation p.D21N 0.16 tolerated(0.21) benign(0.028) TCGA-AZ-6601-01 11 128781301 128781301 G A KCNJ5 Missense_Mutation p.E45K 0.17 tolerated(0.49) benign(0.029) TCGA-AZ-6601-01 11 129739448 129739448 C A NFRKB Nonsense_Mutation p.G1183* 0.21 TCGA-AZ-6601-01 11 133790549 133790549 G A IGSF9B Missense_Mutation p.T1024M 0.22 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-AZ-6601-01 11 134128471 134128471 C T ACAD8 Missense_Mutation p.P148L 0.21 tolerated(0.22) benign(0.016) TCGA-AZ-6601-01 11 134257618 134257618 G A B3GAT1 Intron 0.25 TCGA-AZ-6601-01 11 17741758 17741758 G A MYOD1 Silent p.R143R 0.25 TCGA-AZ-6601-01 11 17741785 17741785 C T MYOD1 Silent p.N152N 0.31 TCGA-AZ-6601-01 11 18722704 18722704 C T TMEM86A Silent p.D82D 0.30 TCGA-AZ-6601-01 11 3038492 3038492 G T CARS Silent p.A587A 0.18 TCGA-AZ-6601-01 11 309294 309294 C A IFITM2 3'UTR 0.21 TCGA-AZ-6601-01 11 30937209 30937209 C T DCDC1 Missense_Mutation p.E1168K 0.27 tolerated(0.08) possibly_damaging(0.502) TCGA-AZ-6601-01 11 31785021 31785024 ACTC - ELP4 Intron 0.32 TCGA-AZ-6601-01 11 33682408 33682408 G T KIAA1549L Splice_Site p.X1706_splice 0.15 TCGA-AZ-6601-01 11 43283930 43283930 C T HNRNPKP3 RNA 0.18 TCGA-AZ-6601-01 11 43465021 43465021 C T TTC17 Missense_Mutation p.R800W 0.12 deleterious(0.01) probably_damaging(0.928) TCGA-AZ-6601-01 11 43702399 43702399 G A HSD17B12 Missense_Mutation p.A8T 0.24 tolerated(0.16) benign(0.011) TCGA-AZ-6601-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.26 TCGA-AZ-6601-01 11 45274114 45274114 G T SYT13 Missense_Mutation p.P235H 0.07 tolerated(0.12) possibly_damaging(0.628) TCGA-AZ-6601-01 11 45936019 45936019 G A PEX16 Missense_Mutation p.T181M 0.19 deleterious(0.01) probably_damaging(0.919) TCGA-AZ-6601-01 11 46332676 46332676 C A CREB3L1 Missense_Mutation p.P230H 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 11 46342324 46342324 G A CREB3L1 3'UTR 0.20 TCGA-AZ-6601-01 11 46406826 46406826 T A CHRM4 Missense_Mutation p.S428C 0.26 tolerated(0.05) benign(0.076) TCGA-AZ-6601-01 11 46569917 46569917 G A AMBRA1 Missense_Mutation p.P5L 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.601) TCGA-AZ-6601-01 11 4676473 4676473 G A OR51E1 3'UTR 0.27 TCGA-AZ-6601-01 11 46898044 46898044 C T LRP4 Missense_Mutation p.R1170Q 0.09 deleterious(0.01) probably_damaging(0.941) TCGA-AZ-6601-01 11 47269233 47269233 G A ACP2 Missense_Mutation p.R86C 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 11 47307996 47307996 G A MADD Missense_Mutation p.R855Q 0.24 deleterious_low_confidence(0.03) benign(0.222) TCGA-AZ-6601-01 11 47345273 47345273 C T MADD Missense_Mutation p.R1477C 0.20 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 11 47364614 47364614 C T MYBPC3 Missense_Mutation p.V437M 0.32 deleterious(0.04) benign(0.409) TCGA-AZ-6601-01 11 47367781 47367781 C A MYBPC3 Missense_Mutation p.R356M 0.08 deleterious(0) benign(0.149) TCGA-AZ-6601-01 11 47372950 47372950 G A MYBPC3 Silent p.R44R 0.26 TCGA-AZ-6601-01 11 47612126 47612126 G T C1QTNF4 Silent p.S79S 0.23 TCGA-AZ-6601-01 11 47746215 47746215 G T FNBP4 Silent p.P708P 0.18 TCGA-AZ-6601-01 11 48238461 48238461 C A OR4B1 Missense_Mutation p.L34I 0.18 tolerated(0.46) benign(0.082) TCGA-AZ-6601-01 11 48238919 48238919 C A OR4B1 Silent p.A186A 0.20 TCGA-AZ-6601-01 11 55418697 55418697 T C OR4S2 Silent p.G106G 0.33 TCGA-AZ-6601-01 11 55587696 55587696 G A OR5D18 Silent p.Q197Q 0.23 TCGA-AZ-6601-01 11 556851 556851 G A C11orf35 Silent p.Y320Y 0.23 TCGA-AZ-6601-01 11 556937 556937 G T C11orf35 Missense_Mutation p.L292M 0.28 tolerated(0.16) benign(0.141) TCGA-AZ-6601-01 11 55761719 55761719 C T OR5F1 Missense_Mutation p.R128H 0.18 deleterious(0.03) benign(0.001) TCGA-AZ-6601-01 11 55872584 55872584 A C OR8H2 Missense_Mutation p.E22D 0.12 tolerated(0.06) benign(0.12) TCGA-AZ-6601-01 11 57069632 57069632 G A TNKS1BP1 Missense_Mutation p.R1584W 0.18 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 11 57569203 57569203 A G CTNND1 Splice_Site p.X319_splice 0.14 TCGA-AZ-6601-01 11 58920186 58920188 CTT - FAM111A In_Frame_Del p.L350del 0.15 TCGA-AZ-6601-01 11 59190060 59190060 G A OR5A2 Missense_Mutation p.R123W 0.16 deleterious(0.01) benign(0.12) TCGA-AZ-6601-01 11 609067 609067 C T PHRF1 Missense_Mutation p.A1203V 0.17 tolerated(0.34) possibly_damaging(0.873) TCGA-AZ-6601-01 11 62340076 62340076 G A EEF1G Missense_Mutation p.R51C 0.29 tolerated(0.06) benign(0.015) TCGA-AZ-6601-01 11 62361504 62361504 C T MTA2 Missense_Mutation p.R617Q 0.29 deleterious_low_confidence(0) benign(0.162) TCGA-AZ-6601-01 11 62365995 62365995 G A MTA2 Missense_Mutation p.R103W 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 11 62601906 62601906 C T WDR74 Missense_Mutation p.G238R 0.20 tolerated(0.35) benign(0.004) TCGA-AZ-6601-01 11 6261341 6261341 C T CNGA4 Missense_Mutation p.S106L 0.28 tolerated(0.3) benign(0.052) TCGA-AZ-6601-01 11 62751925 62751925 G A SLC22A6 Missense_Mutation p.R80C 0.32 deleterious(0.01) possibly_damaging(0.816) TCGA-AZ-6601-01 11 63671613 63671613 G A MARK2 Missense_Mutation p.R557Q 0.18 tolerated(0.14) benign(0.009) TCGA-AZ-6601-01 11 64026057 64026057 C A PLCB3 Silent p.P375P 0.18 TCGA-AZ-6601-01 11 64056586 64056586 C T GPR137 Intron 0.27 TCGA-AZ-6601-01 11 64109092 64109092 G A CCDC88B Missense_Mutation p.V185M 0.20 tolerated(0.09) benign(0.082) TCGA-AZ-6601-01 11 64119821 64119821 C T CCDC88B Missense_Mutation p.R1107W 0.30 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 11 6423943 6423943 G A APBB1 Missense_Mutation p.R373C 0.26 deleterious(0.02) benign(0.006) TCGA-AZ-6601-01 11 6432527 6432527 G A APBB1 Silent p.H17H 0.23 TCGA-AZ-6601-01 11 64374620 64374620 G A NRXN2 3'UTR 0.26 TCGA-AZ-6601-01 11 64535620 64535620 G A SF1 Silent p.S467S 0.21 TCGA-AZ-6601-01 11 64564830 64564830 G A MAP4K2 Missense_Mutation p.T398I 0.32 tolerated(0.19) benign(0.007) TCGA-AZ-6601-01 11 64577402 64577402 C G MEN1 Missense_Mutation p.E60D 0.08 tolerated(0.6) benign(0.005) TCGA-AZ-6601-01 11 64599110 64599110 C T CDC42BPG Nonsense_Mutation p.W1057* 0.09 TCGA-AZ-6601-01 11 64665771 64665771 G A ATG2A Missense_Mutation p.R1579C 0.19 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 11 64757021 64757021 C T BATF2 Silent p.P135P 0.27 TCGA-AZ-6601-01 11 6478232 6478232 G A TRIM3 Missense_Mutation p.R242C 0.19 tolerated(0.11) possibly_damaging(0.634) TCGA-AZ-6601-01 11 64807221 64807221 C A SNX15 Missense_Mutation p.A329E 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 11 64813529 64813529 C T NAALADL1 Missense_Mutation p.R638H 0.07 tolerated(0.39) benign(0.005) TCGA-AZ-6601-01 11 64815662 64815662 C T NAALADL1 Missense_Mutation p.R437H 0.25 deleterious(0) possibly_damaging(0.464) TCGA-AZ-6601-01 11 64901023 64901023 G T SYVN1 Missense_Mutation p.A17D 0.17 deleterious(0.01) possibly_damaging(0.791) TCGA-AZ-6601-01 11 64977527 64977527 C T CAPN1 Silent p.S634S 0.19 TCGA-AZ-6601-01 11 65088910 65088910 C T CDC42EP2 Silent p.L181L 0.24 TCGA-AZ-6601-01 11 65315394 65315394 C T LTBP3 Missense_Mutation p.V615M 0.31 deleterious(0.03) possibly_damaging(0.804) TCGA-AZ-6601-01 11 65386336 65386336 C T PCNXL3 Silent p.A501A 0.25 TCGA-AZ-6601-01 11 65404509 65404509 T C PCNXL3 3'UTR 0.30 TCGA-AZ-6601-01 11 65412462 65412462 C T SIPA1 Missense_Mutation p.R341W 0.10 deleterious(0) probably_damaging(0.991) TCGA-AZ-6601-01 11 65620134 65620134 G A SNX32 Missense_Mutation p.D316N 0.39 tolerated(0.5) benign(0.319) TCGA-AZ-6601-01 11 65771207 65771207 C T BANF1 Silent p.F78F 0.19 TCGA-AZ-6601-01 11 66052250 66052250 C T YIF1A Missense_Mutation p.R247H 0.20 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 11 66062230 66062230 C T TMEM151A Silent p.G171G 0.22 TCGA-AZ-6601-01 11 66099886 66099886 T C RIN1 Missense_Mutation p.D738G 0.16 tolerated_low_confidence(0.19) benign(0.002) TCGA-AZ-6601-01 11 66249818 66249818 G A DPP3 Silent p.L49L 0.08 TCGA-AZ-6601-01 11 66294258 66294258 G A BBS1 Missense_Mutation p.R440Q 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 11 66411554 66411554 G A RBM14-RBM4 Missense_Mutation p.R324Q 0.25 deleterious(0.01) unknown(0) TCGA-AZ-6601-01 11 66468726 66468726 G A SPTBN2 Silent p.D948D 0.18 TCGA-AZ-6601-01 11 66478181 66478181 C T SPTBN2 Silent p.S315S 0.22 TCGA-AZ-6601-01 11 6653891 6653891 C T DCHS1 Missense_Mutation p.R951Q 0.22 tolerated(0.25) benign(0.058) TCGA-AZ-6601-01 11 66605883 66605883 G A C11orf80 Missense_Mutation p.A572T 0.22 tolerated(0.34) benign(0.027) TCGA-AZ-6601-01 11 67201897 67201897 C T RPS6KB2 Missense_Mutation p.T366M 0.25 deleterious(0) possibly_damaging(0.908) TCGA-AZ-6601-01 11 67203590 67203590 G A PTPRCAP Missense_Mutation p.R79W 0.33 deleterious(0.01) benign(0.266) TCGA-AZ-6601-01 11 67209475 67209475 C T CORO1B Missense_Mutation p.E96K 0.20 deleterious(0.02) benign(0.018) TCGA-AZ-6601-01 11 67219288 67219288 C T GPR152 Missense_Mutation p.R303Q 0.21 tolerated(0.06) benign(0.147) TCGA-AZ-6601-01 11 67395649 67395649 C T NUDT8 Missense_Mutation p.R160Q 0.32 tolerated(1) benign(0) TCGA-AZ-6601-01 11 68192662 68192662 G A LRP5 Missense_Mutation p.G1110D 0.34 tolerated(0.57) benign(0.008) TCGA-AZ-6601-01 11 68540843 68540843 C T CPT1A Missense_Mutation p.V544M 0.22 deleterious(0.01) probably_damaging(0.952) TCGA-AZ-6601-01 11 68707383 68707383 G A IGHMBP2 3'UTR 0.29 TCGA-AZ-6601-01 11 69462870 69462870 G A CCND1 Missense_Mutation p.R228H 0.26 tolerated(0.14) benign(0.002) TCGA-AZ-6601-01 11 6977005 6977005 C T ZNF215 Missense_Mutation p.A266V 0.14 tolerated(0.23) benign(0.001) TCGA-AZ-6601-01 11 69972190 69972190 G A ANO1 Missense_Mutation p.G329D 0.08 deleterious(0) possibly_damaging(0.788) TCGA-AZ-6601-01 11 7022122 7022122 T C ZNF214 Silent p.R264R 0.09 TCGA-AZ-6601-01 11 7065120 7065120 C T NLRP14 Silent p.C621C 0.13 TCGA-AZ-6601-01 11 71155213 71155213 G A DHCR7 Silent p.F49F 0.25 TCGA-AZ-6601-01 11 71238891 71238891 G A KRTAP5-7 3'UTR 0.27 TCGA-AZ-6601-01 11 71809188 71809188 C T LAMTOR1 Intron 0.32 TCGA-AZ-6601-01 11 71932236 71932236 G A FOLR2 Missense_Mutation p.R119H 0.21 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 11 71942174 71942174 G A INPPL1 Missense_Mutation p.E480K 0.18 deleterious(0) probably_damaging(0.969) TCGA-AZ-6601-01 11 71948712 71948712 C T INPPL1 Missense_Mutation p.R1142C 0.34 tolerated(0.08) possibly_damaging(0.689) TCGA-AZ-6601-01 11 71950884 71950884 T C PHOX2A Missense_Mutation p.Q255R 0.17 tolerated_low_confidence(0.14) unknown(0) TCGA-AZ-6601-01 11 72295250 72295250 C T PDE2A Missense_Mutation p.A549T 0.14 tolerated(0.18) benign(0.124) TCGA-AZ-6601-01 11 73007861 73007861 C T P2RY6 Missense_Mutation p.R100C 0.21 deleterious(0) probably_damaging(0.976) TCGA-AZ-6601-01 11 73063961 73063961 G A ARHGEF17 Silent p.E1119E 0.22 TCGA-AZ-6601-01 11 73067276 73067276 G A ARHGEF17 Silent p.A1240A 0.18 TCGA-AZ-6601-01 11 73068163 73068163 C T ARHGEF17 Missense_Mutation p.R1329C 0.26 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 11 73825524 73825524 G A C2CD3 Silent p.I545I 0.19 TCGA-AZ-6601-01 11 74994374 74994374 A G ARRB1 Missense_Mutation p.L104P 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 11 75152762 75152762 G A GDPD5 Silent p.V418V 0.20 TCGA-AZ-6601-01 11 75160999 75160999 C T GDPD5 Silent p.T135T 0.16 TCGA-AZ-6601-01 11 75440015 75440015 C T MOGAT2 Silent p.R277R 0.20 TCGA-AZ-6601-01 11 76507686 76507686 C T TSKU Silent p.T342T 0.18 TCGA-AZ-6601-01 11 76750644 76750644 C A B3GNT6 Missense_Mutation p.L17I 0.23 deleterious(0.02) benign(0.123) TCGA-AZ-6601-01 11 76872064 76872064 G A MYO7A Missense_Mutation p.A416T 0.22 tolerated(0.19) probably_damaging(0.981) TCGA-AZ-6601-01 11 76919799 76919799 C T MYO7A Missense_Mutation p.T2001M 0.18 deleterious(0.01) possibly_damaging(0.618) TCGA-AZ-6601-01 11 77911215 77911215 G A USP35 Missense_Mutation p.A325T 0.18 deleterious(0.01) unknown(0) TCGA-AZ-6601-01 11 77916968 77916968 G A USP35 Silent p.A426A 0.20 TCGA-AZ-6601-01 11 77920714 77920714 C T USP35 Missense_Mutation p.R605C 0.20 tolerated(0.22) unknown(0) TCGA-AZ-6601-01 11 77937528 77937528 T C GAB2 Missense_Mutation p.N397S 0.18 tolerated(0.46) probably_damaging(0.998) TCGA-AZ-6601-01 11 7950121 7950121 G A OR10A6 Missense_Mutation p.A30V 0.10 tolerated(1) benign(0) TCGA-AZ-6601-01 11 8016557 8016557 C T EIF3F Silent p.S258S 0.19 TCGA-AZ-6601-01 11 82643985 82643985 G A C11orf82 Silent p.P535P 0.21 TCGA-AZ-6601-01 11 842531 842531 C T POLR2L 5'UTR 0.29 TCGA-AZ-6601-01 11 88337925 88337925 T A GRM5 Missense_Mutation p.D452V 0.18 deleterious(0) possibly_damaging(0.751) TCGA-AZ-6601-01 11 9164304 9164304 C T DENND5A Missense_Mutation p.R1159Q 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 11 92526122 92526122 C G FAT3 Missense_Mutation p.L1601V 0.15 possibly_damaging(0.646) TCGA-AZ-6601-01 11 94533143 94533143 G A AMOTL1 Missense_Mutation p.E263K 0.21 deleterious(0) probably_damaging(0.991) TCGA-AZ-6601-01 11 99715845 99715845 A T CNTN5 Missense_Mutation p.D143V 0.15 deleterious(0) benign(0.436) TCGA-AZ-6601-01 12 101767194 101767194 C T UTP20 Silent p.T2298T 0.32 TCGA-AZ-6601-01 12 104142808 104142808 G A STAB2 Silent p.T2104T 0.18 TCGA-AZ-6601-01 12 107914390 107914390 G A BTBD11 Missense_Mutation p.R421H 0.23 deleterious(0.03) possibly_damaging(0.871) TCGA-AZ-6601-01 12 108912982 108912982 C T FICD Silent p.N369N 0.28 TCGA-AZ-6601-01 12 109309606 109309606 T G SVOP Missense_Mutation p.S400R 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 12 109678956 109678956 A G ACACB Missense_Mutation p.E1631G 0.17 deleterious(0) probably_damaging(0.971) TCGA-AZ-6601-01 12 111099083 111099083 G A HVCN1 Silent p.G64G 0.22 TCGA-AZ-6601-01 12 111747964 111747964 G A CUX2 Missense_Mutation p.G460R 0.20 tolerated(0.17) possibly_damaging(0.592) TCGA-AZ-6601-01 12 11183509 11183509 A G TAS2R31 Silent p.C142C 0.24 TCGA-AZ-6601-01 12 111893980 111893980 C T ATXN2 Silent p.A1199A 0.05 TCGA-AZ-6601-01 12 113533198 113533198 C A DTX1 Silent p.P539P 0.23 TCGA-AZ-6601-01 12 113756814 113756814 G A SLC8B1 Missense_Mutation p.R253W 0.24 tolerated(0.11) benign(0.001) TCGA-AZ-6601-01 12 113906014 113906014 G A LHX5 Missense_Mutation p.A198V 0.27 deleterious(0.05) probably_damaging(0.971) TCGA-AZ-6601-01 12 113909184 113909184 C T LHX5 Silent p.S40S 0.29 TCGA-AZ-6601-01 12 115112132 115112132 G A TBX3 Silent p.A536A 0.25 TCGA-AZ-6601-01 12 116413345 116413345 C T MED13L Missense_Mutation p.V1855I 0.20 tolerated(1) benign(0.169) TCGA-AZ-6601-01 12 117461972 117461972 G A FBXW8 Missense_Mutation p.R463H 0.22 deleterious(0) probably_damaging(0.989) TCGA-AZ-6601-01 12 117476788 117476788 C A TESC 3'UTR 0.26 TCGA-AZ-6601-01 12 117486923 117486923 T C TESC Missense_Mutation p.N84D 0.24 tolerated(0.35) benign(0.002) TCGA-AZ-6601-01 12 118105363 118105363 G A KSR2 Missense_Mutation p.R363C 0.19 deleterious(0.01) possibly_damaging(0.795) TCGA-AZ-6601-01 12 118198881 118198881 C T KSR2 Silent p.A307A 0.10 TCGA-AZ-6601-01 12 11992162 11992162 C T ETV6 Silent p.S84S 0.18 TCGA-AZ-6601-01 12 120168404 120168404 G A CIT Missense_Mutation p.R1128C 0.31 deleterious(0) probably_damaging(0.98) TCGA-AZ-6601-01 12 120502556 120502556 G A CCDC64 Missense_Mutation p.R261Q 0.32 tolerated(0.1) probably_damaging(0.998) TCGA-AZ-6601-01 12 121442092 121442092 A T C12orf43 Missense_Mutation p.V218D 0.28 tolerated(0.51) possibly_damaging(0.804) TCGA-AZ-6601-01 12 122689160 122689160 C T B3GNT4 5'UTR 0.24 TCGA-AZ-6601-01 12 122691666 122691666 C T B3GNT4 Missense_Mutation p.R290C 0.23 deleterious(0.01) probably_damaging(0.94) TCGA-AZ-6601-01 12 12283787 12283787 C T LRP6 Silent p.Q1337Q 0.20 TCGA-AZ-6601-01 12 124829356 124829356 G A NCOR2 Missense_Mutation p.R1501C 0.40 probably_damaging(0.999) TCGA-AZ-6601-01 12 124904583 124904583 G T NCOR2 Missense_Mutation p.L468I 0.18 unknown(0) TCGA-AZ-6601-01 12 125465216 125465216 C A DHX37 Missense_Mutation p.E186D 0.24 tolerated(0.46) possibly_damaging(0.636) TCGA-AZ-6601-01 12 125626698 125626698 G A AACS Missense_Mutation p.V648M 0.26 deleterious(0) benign(0.271) TCGA-AZ-6601-01 12 129558407 129558407 G C TMEM132D 3'UTR 0.17 TCGA-AZ-6601-01 12 130648972 130648972 C T FZD10 Silent p.A495A 0.19 TCGA-AZ-6601-01 12 131291630 131291630 C T STX2 Silent p.S120S 0.31 TCGA-AZ-6601-01 12 131466566 131466566 C T GPR133 Missense_Mutation p.R150W 0.22 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 12 131488762 131488762 C T GPR133 Silent p.T392T 0.26 TCGA-AZ-6601-01 12 132211525 132211525 A T SFSWAP Missense_Mutation p.E291D 0.28 tolerated(1) benign(0.006) TCGA-AZ-6601-01 12 132425968 132425968 G A PUS1 Missense_Mutation p.A226T 0.20 tolerated(0.56) benign(0.001) TCGA-AZ-6601-01 12 132636174 132636174 C T NOC4L Missense_Mutation p.R407C 0.28 deleterious(0.02) benign(0.431) TCGA-AZ-6601-01 12 133349641 133349641 T C GOLGA3 3'UTR 0.31 TCGA-AZ-6601-01 12 133353614 133353614 C T GOLGA3 Missense_Mutation p.R1262Q 0.24 tolerated(0.12) benign(0.287) TCGA-AZ-6601-01 12 14822658 14822658 C T GUCY2C Missense_Mutation p.R427Q 0.22 tolerated(0.6) benign(0.001) TCGA-AZ-6601-01 12 14839121 14839121 T C GUCY2C Silent p.S123S 0.22 TCGA-AZ-6601-01 12 14923880 14923880 T C HIST4H4 Missense_Mutation p.I47V 0.17 deleterious(0.01) possibly_damaging(0.576) TCGA-AZ-6601-01 12 19427575 19427575 A - PLEKHA5 Frame_Shift_Del p.K326Rfs*3 0.18 TCGA-AZ-6601-01 12 19518974 19518974 G A PLEKHA5 Missense_Mutation p.E1229K 0.25 tolerated(0.12) benign(0.029) TCGA-AZ-6601-01 12 2162700 2162700 G C CACNA1C 5'Flank 0.20 TCGA-AZ-6601-01 12 21628401 21628401 C T RECQL Splice_Site p.X406_splice 0.28 TCGA-AZ-6601-01 12 22086731 22086731 C T ABCC9 Missense_Mutation p.G90D 0.23 deleterious(0) probably_damaging(0.991) TCGA-AZ-6601-01 12 25148837 25148837 C T C12orf77 Missense_Mutation p.S104N 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-AZ-6601-01 12 25297395 25297395 G A CASC1 Silent p.V302V 0.20 TCGA-AZ-6601-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.22 deleterious(0) benign(0.361) TCGA-AZ-6601-01 12 2566834 2566834 G A CACNA1C Missense_Mutation p.R240H 0.29 deleterious(0) probably_damaging(0.994) TCGA-AZ-6601-01 12 27081799 27081799 G A ASUN Missense_Mutation p.R114W 0.34 tolerated(0.05) benign(0.022) TCGA-AZ-6601-01 12 27799018 27799018 C T PPFIBP1 Silent p.N98N 0.39 TCGA-AZ-6601-01 12 27835601 27835601 C T PPFIBP1 Missense_Mutation p.R744W 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 12 2939981 2939981 T C NRIP2 Missense_Mutation p.N130D 0.17 deleterious(0.04) benign(0.001) TCGA-AZ-6601-01 12 29462163 29462163 G A FAR2 Silent p.A256A 0.15 TCGA-AZ-6601-01 12 2997334 2997334 G A RHNO1 Silent p.V142V 0.27 TCGA-AZ-6601-01 12 3104002 3104002 G A TEAD4 Missense_Mutation p.A24T 0.19 tolerated(0.57) benign(0.001) TCGA-AZ-6601-01 12 34179140 34179140 T C ALG10 Silent p.L238L 0.20 TCGA-AZ-6601-01 12 40646737 40646737 C T LRRK2 Missense_Mutation p.L403F 0.11 tolerated(0.14) probably_damaging(0.976) TCGA-AZ-6601-01 12 40692094 40692094 C A LRRK2 Nonsense_Mutation p.S1049* 0.21 TCGA-AZ-6601-01 12 40757342 40757342 C T LRRK2 Silent p.C2389C 0.33 TCGA-AZ-6601-01 12 40961497 40961497 C T MUC19 3'UTR 0.11 TCGA-AZ-6601-01 12 4398033 4398033 G A CCND2 Silent p.P199P 0.24 TCGA-AZ-6601-01 12 44537360 44537360 G A TMEM117 Missense_Mutation p.R148Q 0.26 tolerated(0.11) probably_damaging(0.979) TCGA-AZ-6601-01 12 46242679 46242679 T C ARID2 Silent p.S547S 0.18 TCGA-AZ-6601-01 12 46315820 46315820 C T SCAF11 3'UTR 0.18 TCGA-AZ-6601-01 12 46598112 46598112 G A SLC38A1 Missense_Mutation p.T265M 0.22 tolerated(0.07) possibly_damaging(0.493) TCGA-AZ-6601-01 12 48240491 48240491 A G VDR Missense_Mutation p.W336R 0.15 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 12 48379732 48379732 C T COL2A1 Missense_Mutation p.R515H 0.27 possibly_damaging(0.587) TCGA-AZ-6601-01 12 48491792 48491792 C T SENP1 Silent p.S40S 0.10 TCGA-AZ-6601-01 12 48723673 48723673 C T H1FNT Missense_Mutation p.P200L 0.27 tolerated(0.13) possibly_damaging(0.859) TCGA-AZ-6601-01 12 48736820 48736820 T C ZNF641 Missense_Mutation p.H418R 0.26 deleterious(0) probably_damaging(0.977) TCGA-AZ-6601-01 12 4919736 4919736 G A KCNA6 Missense_Mutation p.A177T 0.18 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 12 49431409 49431409 C T KMT2D Missense_Mutation p.E3244K 0.32 possibly_damaging(0.541) TCGA-AZ-6601-01 12 49431437 49431437 G A KMT2D Silent p.D3234D 0.26 TCGA-AZ-6601-01 12 49724399 49724399 T C TROAP Missense_Mutation p.S591P 0.11 tolerated_low_confidence(0.44) benign(0.067) TCGA-AZ-6601-01 12 50044493 50044493 G A FMNL3 Missense_Mutation p.R656C 0.24 tolerated(0.11) probably_damaging(0.99) TCGA-AZ-6601-01 12 50537814 50537814 C T CERS5 Missense_Mutation p.C75Y 0.28 tolerated(1) benign(0) TCGA-AZ-6601-01 12 51737544 51737544 C T CELA1 Missense_Mutation p.V65M 0.25 deleterious(0) probably_damaging(0.984) TCGA-AZ-6601-01 12 52200079 52200079 A G SCN8A Silent p.A1603A 0.15 TCGA-AZ-6601-01 12 52284448 52284448 G A ANKRD33 Missense_Mutation p.V240M 0.14 deleterious(0.04) benign(0.408) TCGA-AZ-6601-01 12 52385766 52385766 C T ACVR1B Nonsense_Mutation p.Q502* 0.23 TCGA-AZ-6601-01 12 52387842 52387842 G A ACVR1B Missense_Mutation p.R530H 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 12 52565053 52565053 C T KRT80 3'UTR 0.14 TCGA-AZ-6601-01 12 52827746 52827746 C T KRT75 Missense_Mutation p.V115M 0.28 tolerated(0.08) possibly_damaging(0.8) TCGA-AZ-6601-01 12 52841141 52841141 C A KRT6B Missense_Mutation p.G510C 0.23 deleterious(0.03) unknown(0) TCGA-AZ-6601-01 12 53185580 53185580 C T KRT3 Silent p.T403T 0.21 TCGA-AZ-6601-01 12 53292590 53292590 C T KRT8 Missense_Mutation p.A387T 0.27 deleterious(0.01) benign(0.071) TCGA-AZ-6601-01 12 53580194 53580194 C T ZNF740 Silent p.C131C 0.09 TCGA-AZ-6601-01 12 53722752 53722752 C T SP7 Nonsense_Mutation p.W158* 0.25 TCGA-AZ-6601-01 12 53777213 53777213 G T SP1 Missense_Mutation p.Q494H 0.24 deleterious(0) possibly_damaging(0.781) TCGA-AZ-6601-01 12 54070057 54070057 G A ATP5G2 5'UTR 0.14 TCGA-AZ-6601-01 12 54379166 54379166 C T HOXC10 Silent p.C41C 0.19 TCGA-AZ-6601-01 12 54474042 54474042 C T RP11-834C11.3 Intron 0.23 TCGA-AZ-6601-01 12 54856496 54856496 C A GTSF1 Missense_Mutation p.R86S 0.21 tolerated(0.89) benign(0.004) TCGA-AZ-6601-01 12 551007 551007 G A CCDC77 Missense_Mutation p.R463Q 0.30 tolerated(0.06) benign(0.1) TCGA-AZ-6601-01 12 56031492 56031492 C T OR10P1 Missense_Mutation p.R273C 0.11 deleterious(0) probably_damaging(0.987) TCGA-AZ-6601-01 12 56120552 56120552 G A CD63 Missense_Mutation p.R120W 0.10 deleterious(0.05) possibly_damaging(0.773) TCGA-AZ-6601-01 12 56421626 56421626 C T IKZF4 Missense_Mutation p.R204C 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 12 56712169 56712169 T C PAN2 Silent p.T1142T 0.14 TCGA-AZ-6601-01 12 57577606 57577606 G A LRP1 Missense_Mutation p.R1948Q 0.21 probably_damaging(0.996) TCGA-AZ-6601-01 12 57587358 57587358 G A LRP1 Missense_Mutation p.R2565H 0.20 benign(0.004) TCGA-AZ-6601-01 12 57592327 57592327 G A LRP1 Missense_Mutation p.V3184M 0.26 probably_damaging(0.957) TCGA-AZ-6601-01 12 57599365 57599365 G A LRP1 Missense_Mutation p.G3832D 0.14 possibly_damaging(0.851) TCGA-AZ-6601-01 12 57686378 57686378 G A R3HDM2 Intron 0.25 TCGA-AZ-6601-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.21 TCGA-AZ-6601-01 12 58124635 58124635 G T AGAP2 Silent p.P749P 0.15 TCGA-AZ-6601-01 12 58190152 58190152 G A TSFM Missense_Mutation p.R276H 0.25 tolerated(0.11) benign(0.169) TCGA-AZ-6601-01 12 6078526 6078526 G A VWF Missense_Mutation p.P2527L 0.24 deleterious(0.01) possibly_damaging(0.908) TCGA-AZ-6601-01 12 6094278 6094278 C T VWF Silent p.T2303T 0.21 TCGA-AZ-6601-01 12 6128573 6128573 C T VWF Silent p.P1337P 0.13 TCGA-AZ-6601-01 12 6499404 6499404 G A LTBR Missense_Mutation p.A310T 0.32 tolerated(0.71) benign(0) TCGA-AZ-6601-01 12 6646278 6646278 G - GAPDH Frame_Shift_Del p.G115Efs*21 0.19 TCGA-AZ-6601-01 12 6691409 6691409 G A CHD4 Missense_Mutation p.P1470L 0.20 deleterious(0) probably_damaging(0.977) TCGA-AZ-6601-01 12 6747494 6747494 C T ACRBP Missense_Mutation p.R529Q 0.21 tolerated(0.2) benign(0.022) TCGA-AZ-6601-01 12 6753599 6753599 C T ACRBP Silent p.G216G 0.24 TCGA-AZ-6601-01 12 68708806 68708806 G A MDM1 Missense_Mutation p.T474M 0.09 tolerated(0.12) benign(0.005) TCGA-AZ-6601-01 12 6933255 6933255 C T GPR162 Missense_Mutation p.A64V 0.24 deleterious(0.03) possibly_damaging(0.785) TCGA-AZ-6601-01 12 6954960 6954960 C T GNB3 Missense_Mutation p.R304C 0.17 deleterious(0) benign(0.256) TCGA-AZ-6601-01 12 6964648 6964648 C T USP5 Silent p.T65T 0.28 TCGA-AZ-6601-01 12 70150364 70150364 G A RAB3IP Missense_Mutation p.R160H 0.23 tolerated(0.11) benign(0.024) TCGA-AZ-6601-01 12 7045533 7045533 C T ATN1 Missense_Mutation p.A368V 0.21 benign(0.231) TCGA-AZ-6601-01 12 70932590 70932590 T C PTPRB Intron 0.21 TCGA-AZ-6601-01 12 71094990 71094990 G A PTPRR Missense_Mutation p.A374V 0.27 deleterious(0) possibly_damaging(0.903) TCGA-AZ-6601-01 12 72149041 72149041 T G RAB21 Missense_Mutation p.F44L 0.22 deleterious(0) probably_damaging(0.97) TCGA-AZ-6601-01 12 7360673 7360673 G A PEX5 Missense_Mutation p.R408Q 0.24 deleterious(0.02) benign(0.056) TCGA-AZ-6601-01 12 74932945 74932945 C T ATXN7L3B 3'UTR 0.24 TCGA-AZ-6601-01 12 74933057 74933057 G A ATXN7L3B 3'UTR 0.17 TCGA-AZ-6601-01 12 7527321 7527321 G A CD163L1 Silent p.D1042D 0.16 TCGA-AZ-6601-01 12 75807475 75807475 C T GLIPR1L2 Missense_Mutation p.A193V 0.24 tolerated(0.05) possibly_damaging(0.813) TCGA-AZ-6601-01 12 76461199 76461199 T C NAP1L1 Missense_Mutation p.Q53R 0.22 tolerated(0.07) benign(0.046) TCGA-AZ-6601-01 12 78400557 78400557 T C NAV3 Silent p.D413D 0.12 TCGA-AZ-6601-01 12 8211215 8211215 G A C3AR1 3'UTR 0.35 TCGA-AZ-6601-01 12 88391957 88391957 T C C12orf50 Silent p.L48L 0.19 TCGA-AZ-6601-01 12 88939541 88939541 G A KITLG Silent p.D39D 0.16 TCGA-AZ-6601-01 12 8906506 8906506 C T RIMKLB Nonsense_Mutation p.R172* 0.30 TCGA-AZ-6601-01 12 9016515 9016515 C A A2ML1 Missense_Mutation p.L1210M 0.25 deleterious(0.02) probably_damaging(0.953) TCGA-AZ-6601-01 12 9070237 9070237 G A PHC1 5'UTR 0.27 TCGA-AZ-6601-01 12 9085470 9085470 G A PHC1 Missense_Mutation p.V473I 0.12 deleterious(0.05) unknown(0) TCGA-AZ-6601-01 12 9303329 9303329 G A PZP Missense_Mutation p.T1432M 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-6601-01 12 96641122 96641122 G A ELK3 Silent p.T204T 0.30 TCGA-AZ-6601-01 13 100543636 100543636 T C CLYBL Missense_Mutation p.V331A 0.21 deleterious(0) benign(0.186) TCGA-AZ-6601-01 13 101278121 101278121 T C TMTC4 Missense_Mutation p.M538V 0.10 deleterious(0.01) possibly_damaging(0.66) TCGA-AZ-6601-01 13 103514731 103514731 C T BIVM-ERCC5 Missense_Mutation p.T837M 0.26 tolerated_low_confidence(0.18) benign(0.004) TCGA-AZ-6601-01 13 109793166 109793166 C A MYO16 Missense_Mutation p.L1514M 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-6601-01 13 109793197 109793197 C T MYO16 Missense_Mutation p.T1524I 0.22 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-AZ-6601-01 13 110960224 110960224 G A COL4A2 5'UTR 0.18 TCGA-AZ-6601-01 13 111213700 111213700 G A RAB20 Missense_Mutation p.T56I 0.32 deleterious(0) probably_damaging(0.968) TCGA-AZ-6601-01 13 114203769 114203769 G A TMCO3 Silent p.T650T 0.08 TCGA-AZ-6601-01 13 114321992 114321992 G A GRK1 Silent p.T97T 0.19 TCGA-AZ-6601-01 13 19751125 19751125 G A TUBA3C Missense_Mutation p.A333V 0.22 deleterious_low_confidence(0.01) benign(0.348) TCGA-AZ-6601-01 13 21553888 21553888 T C LATS2 Missense_Mutation p.E905G 0.08 deleterious(0) probably_damaging(0.989) TCGA-AZ-6601-01 13 21563345 21563345 C T LATS2 Missense_Mutation p.E192K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.454) TCGA-AZ-6601-01 13 25272825 25272825 C T ATP12A Silent p.H520H 0.30 TCGA-AZ-6601-01 13 25887877 25887877 A G NUPL1 Missense_Mutation p.T188A 0.12 tolerated(0.21) benign(0.164) TCGA-AZ-6601-01 13 28239925 28239925 C T POLR1D Silent p.G68G 0.14 TCGA-AZ-6601-01 13 30093614 30093614 G A SLC7A1 Missense_Mutation p.S421L 0.20 deleterious(0.02) probably_damaging(0.941) TCGA-AZ-6601-01 13 32953904 32953904 C T BRCA2 Missense_Mutation p.R2991C 0.20 deleterious(0.05) benign(0.303) TCGA-AZ-6601-01 13 33226030 33226030 T - PDS5B Frame_Shift_Del p.L69Sfs*12 0.18 TCGA-AZ-6601-01 13 33344377 33344377 G A PDS5B Missense_Mutation p.R1248Q 0.23 deleterious_low_confidence(0.02) benign(0.028) TCGA-AZ-6601-01 13 36050304 36050304 G A MAB21L1 5'UTR 0.09 TCGA-AZ-6601-01 13 39454701 39454701 G T FREM2 Missense_Mutation p.G3096V 0.09 deleterious_low_confidence(0) benign(0.255) TCGA-AZ-6601-01 13 41384930 41384930 C T SLC25A15 3'Flank 0.27 TCGA-AZ-6601-01 13 41556167 41556167 G A ELF1 Silent p.N8N 0.11 TCGA-AZ-6601-01 13 42874720 42874720 G A AKAP11 Missense_Mutation p.S613N 0.21 tolerated(1) benign(0.008) TCGA-AZ-6601-01 13 43175109 43175109 T A TNFSF11 Missense_Mutation p.I175N 0.24 deleterious(0) benign(0.259) TCGA-AZ-6601-01 13 46287452 46287452 G A SPERT Missense_Mutation p.V98M 0.29 tolerated_low_confidence(0.17) benign(0.143) TCGA-AZ-6601-01 13 46287518 46287518 C T SPERT Missense_Mutation p.R120W 0.30 deleterious(0.04) probably_damaging(1) TCGA-AZ-6601-01 13 48937017 48937017 G A RB1 Missense_Mutation p.R262Q 0.29 tolerated(0.11) possibly_damaging(0.821) TCGA-AZ-6601-01 13 49795006 49795006 G A MLNR Missense_Mutation p.G178D 0.31 deleterious(0.03) possibly_damaging(0.489) TCGA-AZ-6601-01 13 51590376 51590376 A C GUCY1B2 RNA 0.19 TCGA-AZ-6601-01 13 51918582 51918582 G A SERPINE3 Missense_Mutation p.A151T 0.22 tolerated(1) benign(0.006) TCGA-AZ-6601-01 13 52607163 52607163 C T UTP14C 3'UTR 0.26 TCGA-AZ-6601-01 13 52661488 52661488 C T NEK5 Missense_Mutation p.E460K 0.18 tolerated(0.29) benign(0.013) TCGA-AZ-6601-01 13 52676368 52676368 T A NEK5 Missense_Mutation p.I224L 0.20 deleterious(0.03) benign(0.277) TCGA-AZ-6601-01 13 66878875 66878875 C T PCDH9 Missense_Mutation p.S1209N 0.23 tolerated(0.93) benign(0) TCGA-AZ-6601-01 13 70549857 70549857 A G KLHL1 Missense_Mutation p.V192A 0.25 tolerated(0.76) benign(0.009) TCGA-AZ-6601-01 13 73401936 73401936 C T PIBF1 Silent p.N327N 0.12 TCGA-AZ-6601-01 13 75900373 75900373 G A TBC1D4 Missense_Mutation p.R665C 0.26 deleterious(0) benign(0.005) TCGA-AZ-6601-01 13 76407282 76407282 C T LMO7 Silent p.F782F 0.31 TCGA-AZ-6601-01 13 76414233 76414233 C T LMO7 Missense_Mutation p.S922L 0.38 deleterious(0.01) benign(0.222) TCGA-AZ-6601-01 13 77831879 77831879 C A MYCBP2 Missense_Mutation p.E663D 0.11 probably_damaging(0.989) TCGA-AZ-6601-01 13 78130834 78130834 C T SCEL Silent p.R49R 0.17 TCGA-AZ-6601-01 13 78334973 78334973 G A SLAIN1 Silent p.P311P 0.23 TCGA-AZ-6601-01 13 78474024 78474024 C T EDNRB Silent p.L478L 0.42 TCGA-AZ-6601-01 13 78493805 78493805 G T EDNRB 5'UTR 0.29 TCGA-AZ-6601-01 13 79213204 79213204 G A RNF219 Silent p.D101D 0.27 TCGA-AZ-6601-01 13 95830317 95830317 A G ABCC4 Missense_Mutation p.L525P 0.16 deleterious(0.03) possibly_damaging(0.908) TCGA-AZ-6601-01 14 100141783 100141783 C T HHIPL1 Silent p.R723R 0.23 TCGA-AZ-6601-01 14 100363560 100363560 C T EML1 Silent p.S271S 0.24 TCGA-AZ-6601-01 14 100615453 100615453 G A DEGS2 Missense_Mutation p.S226L 0.23 deleterious(0) probably_damaging(0.957) TCGA-AZ-6601-01 14 102499503 102499503 A G DYNC1H1 Missense_Mutation p.K3394R 0.21 possibly_damaging(0.681) TCGA-AZ-6601-01 14 102504852 102504852 G A DYNC1H1 Missense_Mutation p.R3655Q 0.11 probably_damaging(0.972) TCGA-AZ-6601-01 14 102514299 102514299 G A DYNC1H1 Silent p.A4384A 0.24 TCGA-AZ-6601-01 14 102568317 102568317 G A HSP90AA1 Silent p.H87H 0.24 TCGA-AZ-6601-01 14 102695595 102695595 C A MOK 3'UTR 0.27 TCGA-AZ-6601-01 14 103569027 103569027 C T EXOC3L4 Missense_Mutation p.R323C 0.44 deleterious(0) possibly_damaging(0.66) TCGA-AZ-6601-01 14 103576399 103576399 C T EXOC3L4 Missense_Mutation p.R670C 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 14 103599121 103599121 C T TNFAIP2 Missense_Mutation p.A486V 0.29 tolerated(0.2) benign(0.124) TCGA-AZ-6601-01 14 103803130 103803130 G T EIF5 Nonsense_Mutation p.G91* 0.22 TCGA-AZ-6601-01 14 103986185 103986185 G T CKB 3'UTR 0.09 TCGA-AZ-6601-01 14 104577918 104577918 G A ASPG Missense_Mutation p.G534R 0.18 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 14 105167862 105167862 C T INF2 Missense_Mutation p.R54C 0.33 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 14 105167889 105167889 G A INF2 Missense_Mutation p.G63S 0.36 tolerated(0.68) benign(0.2) TCGA-AZ-6601-01 14 105168021 105168021 G A INF2 Missense_Mutation p.A107T 0.22 tolerated(0.07) probably_damaging(0.968) TCGA-AZ-6601-01 14 105677556 105677556 G A BRF1 Silent p.P633P 0.35 TCGA-AZ-6601-01 14 105716163 105716163 G A BTBD6 Silent p.T204T 0.12 TCGA-AZ-6601-01 14 105958539 105958539 C T C14orf80 Missense_Mutation p.R108W 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 14 106308354 106308354 C A IGHD Nonsense_Mutation p.E141* 0.26 TCGA-AZ-6601-01 14 106586305 106586305 T C IGHV3-13 Silent p.T60T 0.23 TCGA-AZ-6601-01 14 20811841 20811841 C T PARP2 Missense_Mutation p.A14V 0.34 tolerated_low_confidence(0.27) possibly_damaging(0.499) TCGA-AZ-6601-01 14 20897339 20897339 C T KLHL33 Missense_Mutation p.G424D 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 14 20925398 20925398 G A APEX1 Missense_Mutation p.A230T 0.22 deleterious(0) probably_damaging(0.95) TCGA-AZ-6601-01 14 21552184 21552184 C T ARHGEF40 Missense_Mutation p.A1255V 0.14 deleterious(0) probably_damaging(0.982) TCGA-AZ-6601-01 14 21699174 21699174 G T HNRNPC Missense_Mutation p.S100Y 0.09 deleterious(0) possibly_damaging(0.77) TCGA-AZ-6601-01 14 21868636 21868636 G T CHD8 Silent p.G1502G 0.15 TCGA-AZ-6601-01 14 23240698 23240698 C T OXA1L Silent p.N473N 0.14 TCGA-AZ-6601-01 14 23344855 23344855 C T LRP10 Missense_Mutation p.A233V 0.19 tolerated(0.52) benign(0.346) TCGA-AZ-6601-01 14 23587013 23587013 C T CEBPE Missense_Mutation p.A177T 0.18 tolerated(0.67) benign(0.052) TCGA-AZ-6601-01 14 23587908 23587908 T G CEBPE Silent p.R131R 0.12 TCGA-AZ-6601-01 14 23902759 23902759 G A MYH7 Silent p.A61A 0.29 TCGA-AZ-6601-01 14 24646939 24646939 G A REC8 Missense_Mutation p.R279H 0.24 tolerated(0.11) benign(0.005) TCGA-AZ-6601-01 14 24658036 24658036 G T IPO4 5'UTR 0.29 TCGA-AZ-6601-01 14 24662201 24662201 C T TM9SF1 Missense_Mutation p.R207H 0.24 tolerated(0.15) benign(0.003) TCGA-AZ-6601-01 14 24737623 24737623 C T RABGGTA Missense_Mutation p.R337H 0.16 tolerated(0.25) benign(0.002) TCGA-AZ-6601-01 14 25075910 25075910 C A GZMH Missense_Mutation p.G214C 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 14 31425372 31425372 A C STRN3 Missense_Mutation p.M120R 0.24 deleterious(0) probably_damaging(0.985) TCGA-AZ-6601-01 14 33243019 33243019 C A AKAP6 Missense_Mutation p.L1170I 0.17 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 14 36211713 36211713 T A RALGAPA1 Missense_Mutation p.Q437L 0.18 deleterious(0) possibly_damaging(0.709) TCGA-AZ-6601-01 14 37131221 37131221 G A PAX9 5'UTR 0.23 TCGA-AZ-6601-01 14 44974333 44974333 C T FSCB Missense_Mutation p.A620T 0.14 deleterious(0.02) unknown(0) TCGA-AZ-6601-01 14 44975437 44975438 - T FSCB Frame_Shift_Ins p.V252Sfs*5 0.18 TCGA-AZ-6601-01 14 45711965 45711965 G A MIS18BP1 Silent p.Y219Y 0.22 TCGA-AZ-6601-01 14 47566079 47566080 - T MDGA2 Frame_Shift_Ins p.S392Vfs*25 0.21 TCGA-AZ-6601-01 14 51196406 51196406 C T NIN Silent p.P1971P 0.35 TCGA-AZ-6601-01 14 51223677 51223677 G A NIN Silent p.I1357I 0.10 TCGA-AZ-6601-01 14 52481882 52481882 C T NID2 Missense_Mutation p.G1047D 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 14 55169253 55169253 T C SAMD4A Missense_Mutation p.S224P 0.08 deleterious(0.05) probably_damaging(0.968) TCGA-AZ-6601-01 14 55434095 55434095 C T WDHD1 Missense_Mutation p.G694D 0.29 deleterious(0) probably_damaging(0.983) TCGA-AZ-6601-01 14 58038711 58038711 G A SLC35F4 Silent p.T314T 0.22 TCGA-AZ-6601-01 14 58605339 58605339 C A C14orf37 Missense_Mutation p.E246D 0.08 tolerated(0.14) benign(0.388) TCGA-AZ-6601-01 14 60622766 60622766 A T DHRS7 Missense_Mutation p.S80T 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-AZ-6601-01 14 61997207 61997207 C T RP11-47I22.4 Missense_Mutation p.A57V 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-AZ-6601-01 14 63447711 63447711 C T KCNH5 Missense_Mutation p.G274D 0.24 tolerated(0.08) possibly_damaging(0.623) TCGA-AZ-6601-01 14 64529565 64529565 G A SYNE2 Silent p.S3388S 0.24 TCGA-AZ-6601-01 14 64678805 64678805 C T SYNE2 Missense_Mutation p.R6284C 0.26 probably_damaging(1) TCGA-AZ-6601-01 14 64906885 64906885 C T MTHFD1 Silent p.V572V 0.25 TCGA-AZ-6601-01 14 65246496 65246496 G A SPTB Silent p.L1474L 0.16 TCGA-AZ-6601-01 14 65271736 65271736 C T SPTB Missense_Mutation p.R74H 0.28 tolerated(0.08) benign(0.323) TCGA-AZ-6601-01 14 65528112 65528112 T C FNTB 3'UTR 0.24 TCGA-AZ-6601-01 14 67389508 67389508 C T GPHN Silent p.S194S 0.25 TCGA-AZ-6601-01 14 69341563 69341563 C T ACTN1 3'UTR 0.41 TCGA-AZ-6601-01 14 69392316 69392316 C T ACTN1 Missense_Mutation p.R60Q 0.22 deleterious(0.03) benign(0.387) TCGA-AZ-6601-01 14 71479882 71479882 A G PCNX Missense_Mutation p.N987D 0.10 tolerated(0.07) benign(0.254) TCGA-AZ-6601-01 14 73440843 73440843 G A ZFYVE1 Silent p.G682G 0.24 TCGA-AZ-6601-01 14 73659540 73659540 C T PSEN1 Missense_Mutation p.A246V 0.25 tolerated(0.15) possibly_damaging(0.61) TCGA-AZ-6601-01 14 74179998 74179998 G T PNMA1 Silent p.T115T 0.12 TCGA-AZ-6601-01 14 74180885 74180885 C T PNMA1 5'UTR 0.28 TCGA-AZ-6601-01 14 74205368 74205368 G A ELMSAN1 Silent p.G448G 0.22 TCGA-AZ-6601-01 14 74538602 74538602 G T ALDH6A1 Missense_Mutation p.L142I 0.25 tolerated(0.16) probably_damaging(0.999) TCGA-AZ-6601-01 14 74826312 74826312 G A VRTN 3'UTR 0.20 TCGA-AZ-6601-01 14 74991922 74991922 G A LTBP2 Missense_Mutation p.A812V 0.21 tolerated(0.35) benign(0.024) TCGA-AZ-6601-01 14 75017917 75017917 C T LTBP2 Silent p.P512P 0.29 TCGA-AZ-6601-01 14 75476005 75476005 A - EIF2B2 3'UTR 0.46 TCGA-AZ-6601-01 14 75991472 75991472 C T BATF Missense_Mutation p.R37C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 14 77703056 77703056 C T TMEM63C Missense_Mutation p.A211V 0.25 tolerated(0.41) benign(0.001) TCGA-AZ-6601-01 14 77746417 77746417 G A POMT2 Missense_Mutation p.R578C 0.16 tolerated(0.18) possibly_damaging(0.453) TCGA-AZ-6601-01 14 78140250 78140250 C T ALKBH1 Missense_Mutation p.E359K 0.20 tolerated_low_confidence(0.24) benign(0.124) TCGA-AZ-6601-01 14 89178635 89178635 C T EML5 Missense_Mutation p.R546Q 0.18 deleterious(0.03) benign(0.273) TCGA-AZ-6601-01 14 91700499 91700499 C T GPR68 Missense_Mutation p.R299H 0.27 deleterious(0.03) benign(0.174) TCGA-AZ-6601-01 14 92560103 92560103 T C ATXN3 Missense_Mutation p.R103G 0.16 tolerated(0.41) benign(0.001) TCGA-AZ-6601-01 14 93396064 93396064 G A CHGA Missense_Mutation p.A87T 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-AZ-6601-01 14 93398722 93398722 G A CHGA Silent p.S272S 0.28 TCGA-AZ-6601-01 14 94394612 94394612 C T FAM181A Missense_Mutation p.S56L 0.19 deleterious_low_confidence(0.05) benign(0) TCGA-AZ-6601-01 14 94394799 94394799 G A FAM181A Silent p.P118P 0.14 TCGA-AZ-6601-01 14 94964515 94964515 G T SERPINA12 Missense_Mutation p.L74I 0.14 tolerated(0.09) benign(0.038) TCGA-AZ-6601-01 14 96777550 96777550 C T ATG2B Silent p.A1355A 0.29 TCGA-AZ-6601-01 14 99640395 99640395 G T BCL11B 3'UTR 0.53 TCGA-AZ-6601-01 14 99981513 99981513 C T CCDC85C 3'UTR 0.36 TCGA-AZ-6601-01 15 22861788 22861788 G A TUBGCP5 Missense_Mutation p.R603H 0.17 tolerated(0.22) benign(0.223) TCGA-AZ-6601-01 15 22933829 22933829 G A CYFIP1 Missense_Mutation p.E250K 0.14 deleterious(0) possibly_damaging(0.7) TCGA-AZ-6601-01 15 23810843 23810843 C T MKRN3 5'UTR 0.24 TCGA-AZ-6601-01 15 24925194 24925194 G A NPAP1 3'UTR 0.21 TCGA-AZ-6601-01 15 25947188 25947188 G A ATP10A Missense_Mutation p.R879C 0.12 deleterious(0.02) benign(0.027) TCGA-AZ-6601-01 15 25972342 25972342 T C ATP10A Missense_Mutation p.N271S 0.16 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 15 27128380 27128380 G T GABRA5 Missense_Mutation p.M92I 0.14 deleterious(0.04) probably_damaging(0.939) TCGA-AZ-6601-01 15 27572140 27572140 G T GABRG3 Missense_Mutation p.R152L 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-AZ-6601-01 15 28447642 28447642 C T HERC2 Missense_Mutation p.R2444H 0.16 benign(0.132) TCGA-AZ-6601-01 15 30112781 30112781 C A TJP1 Intron 0.12 TCGA-AZ-6601-01 15 30925752 30925752 G A ARHGAP11B Missense_Mutation p.R87Q 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 15 31320640 31320640 C T TRPM1 Missense_Mutation p.R1080Q 0.25 tolerated(0.48) possibly_damaging(0.889) TCGA-AZ-6601-01 15 31776899 31776899 G A OTUD7A Missense_Mutation p.T460M 0.09 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 15 31862368 31862368 C T OTUD7A Missense_Mutation p.D62N 0.22 deleterious(0) probably_damaging(0.99) TCGA-AZ-6601-01 15 33954529 33954529 G A RYR3 Missense_Mutation p.G1600S 0.25 possibly_damaging(0.826) TCGA-AZ-6601-01 15 34129831 34129831 G T RYR3 Splice_Site p.X3884_splice 0.27 TCGA-AZ-6601-01 15 34382549 34382549 C A EMC7 Missense_Mutation p.W155L 0.26 deleterious(0.01) probably_damaging(0.964) TCGA-AZ-6601-01 15 34546774 34546774 C T SLC12A6 Missense_Mutation p.R298Q 0.26 tolerated(0.79) benign(0.003) TCGA-AZ-6601-01 15 34549916 34549916 A - SLC12A6 Frame_Shift_Del p.L206Yfs*28 0.25 TCGA-AZ-6601-01 15 34646867 34646867 G A NUTM1 Missense_Mutation p.M404I 0.24 tolerated(0.32) benign(0.008) TCGA-AZ-6601-01 15 35529561 35529561 G A ANP32AP1 RNA 0.18 TCGA-AZ-6601-01 15 39876621 39876621 C T THBS1 Nonsense_Mutation p.Q342* 0.18 TCGA-AZ-6601-01 15 40661750 40661750 G A DISP2 Missense_Mutation p.R1146H 0.27 tolerated(0.15) benign(0.037) TCGA-AZ-6601-01 15 43661244 43661244 G A ZSCAN29 Missense_Mutation p.R134W 0.46 deleterious(0.02) benign(0.405) TCGA-AZ-6601-01 15 45007620 45007620 G T B2M Splice_Site p.X23_splice 0.48 TCGA-AZ-6601-01 15 45364570 45364570 C T SORD Missense_Mutation p.T281I 0.11 deleterious(0.02) benign(0.331) TCGA-AZ-6601-01 15 45434242 45434242 G A DUOX1 Missense_Mutation p.R585H 0.16 tolerated(0.13) benign(0.001) TCGA-AZ-6601-01 15 45559675 45559675 G A SLC28A2 Missense_Mutation p.R322H 0.48 deleterious(0.02) probably_damaging(0.976) TCGA-AZ-6601-01 15 48703080 48703080 T C FBN1 3'UTR 0.21 TCGA-AZ-6601-01 15 48707908 48707908 G T FBN1 Missense_Mutation p.L2626M 0.13 probably_damaging(0.966) TCGA-AZ-6601-01 15 49924411 49924411 C T DTWD1 Missense_Mutation p.T107I 0.13 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 15 50226217 50226217 C T ATP8B4 Missense_Mutation p.A484T 0.25 tolerated(0.14) benign(0.01) TCGA-AZ-6601-01 15 50789365 50789365 G A USP8 Missense_Mutation p.R992Q 0.19 deleterious(0) possibly_damaging(0.654) TCGA-AZ-6601-01 15 50902084 50902084 G A TRPM7 Silent p.I785I 0.10 TCGA-AZ-6601-01 15 51529095 51529095 C T CYP19A1 Missense_Mutation p.R86Q 0.42 deleterious(0) probably_damaging(0.949) TCGA-AZ-6601-01 15 51829839 51829839 G A DMXL2 Missense_Mutation p.T488M 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-AZ-6601-01 15 52427938 52427938 C T GNB5 Missense_Mutation p.G215S 0.25 deleterious(0) probably_damaging(0.948) TCGA-AZ-6601-01 15 52539675 52539675 G A MYO5C Missense_Mutation p.R621W 0.45 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 15 54307661 54307661 C T UNC13C Missense_Mutation p.T854M 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.488) TCGA-AZ-6601-01 15 55727168 55727168 A G DYX1C1 Silent p.L328L 0.21 TCGA-AZ-6601-01 15 55838559 55838559 G A PYGO1 Nonsense_Mutation p.R308* 0.20 TCGA-AZ-6601-01 15 57731179 57731179 C T CGNL1 Missense_Mutation p.R328C 0.41 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 15 57731515 57731515 G A CGNL1 Missense_Mutation p.V440M 0.48 tolerated(0.2) benign(0.004) TCGA-AZ-6601-01 15 57820904 57820904 C T CGNL1 Missense_Mutation p.A1031V 0.52 deleterious(0.04) probably_damaging(0.987) TCGA-AZ-6601-01 15 59397398 59397398 C T CCNB2 5'UTR 0.13 TCGA-AZ-6601-01 15 59910818 59910818 A G GCNT3 Silent p.E127E 0.09 TCGA-AZ-6601-01 15 60907217 60907217 G T RORA Intron 0.11 TCGA-AZ-6601-01 15 64218164 64218164 C T DAPK2 Missense_Mutation p.R263Q 0.52 tolerated(0.43) benign(0.008) TCGA-AZ-6601-01 15 66257330 66257330 C T MEGF11 Missense_Mutation p.R343H 0.22 tolerated(0.38) benign(0.003) TCGA-AZ-6601-01 15 66790137 66790137 G A SNAPC5 5'UTR 0.22 TCGA-AZ-6601-01 15 68118387 68118387 C A SKOR1 Missense_Mutation p.P260H 0.20 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-AZ-6601-01 15 69222904 69222904 G A SPESP1 5'UTR 0.13 TCGA-AZ-6601-01 15 70351138 70351138 C T TLE3 Missense_Mutation p.R261Q 0.47 tolerated(0.58) benign(0.275) TCGA-AZ-6601-01 15 74032702 74032702 C T C15orf59 Silent p.T146T 0.16 TCGA-AZ-6601-01 15 74630361 74630361 G T CYP11A1 Silent p.P506P 0.48 TCGA-AZ-6601-01 15 75652030 75652030 C T MAN2C1 Missense_Mutation p.V627I 0.16 tolerated(0.38) benign(0.008) TCGA-AZ-6601-01 15 77471551 77471551 T C PEAK1 Silent p.E906E 0.19 TCGA-AZ-6601-01 15 78217285 78217285 G T RP11-114H24.7 3'Flank 0.44 TCGA-AZ-6601-01 15 78790577 78790577 C T IREB2 3'UTR 0.13 TCGA-AZ-6601-01 15 78893597 78893597 C A CHRNA3 Nonsense_Mutation p.E463* 0.47 TCGA-AZ-6601-01 15 78894224 78894224 G A CHRNA3 Missense_Mutation p.L254F 0.13 tolerated(0.2) probably_damaging(1) TCGA-AZ-6601-01 15 78894268 78894268 C T CHRNA3 Missense_Mutation p.R239H 0.43 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 15 81614845 81614845 C A STARD5 Missense_Mutation p.E62D 0.08 tolerated(0.2) benign(0.004) TCGA-AZ-6601-01 15 85333940 85333940 G A ZNF592 Missense_Mutation p.C742Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 15 89060108 89060108 G A DET1 Silent p.S467S 0.24 TCGA-AZ-6601-01 15 89398247 89398247 C T ACAN Missense_Mutation p.P811S 0.16 tolerated(0.43) benign(0) TCGA-AZ-6601-01 16 105501 105501 G A SNRNP25 Missense_Mutation p.G38S 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 16 11001911 11001911 G A CIITA Silent p.A854A 0.35 TCGA-AZ-6601-01 16 111226 111226 C T RHBDF1 Silent p.P483P 0.33 TCGA-AZ-6601-01 16 1245996 1245996 C T CACNA1H Missense_Mutation p.P206S 0.08 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 16 1250278 1250278 C T CACNA1H Missense_Mutation p.R276W 0.33 deleterious(0) probably_damaging(0.959) TCGA-AZ-6601-01 16 1397303 1397303 T C BAIAP3 Missense_Mutation p.L954P 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 16 1400138 1400138 G A TSR3 Silent p.C208C 0.24 TCGA-AZ-6601-01 16 14026058 14026058 C T ERCC4 Nonsense_Mutation p.R340* 0.36 TCGA-AZ-6601-01 16 14403144 14403144 C T MIR365A RNA 0.07 TCGA-AZ-6601-01 16 15122809 15122809 G A PDXDC1 Missense_Mutation p.A427T 0.14 tolerated(0.43) benign(0.023) TCGA-AZ-6601-01 16 1570321 1570321 G A IFT140 Silent p.S1228S 0.23 TCGA-AZ-6601-01 16 16165540 16165540 T C ABCC1 Silent p.H622H 0.18 TCGA-AZ-6601-01 16 1818241 1818241 G T MAPK8IP3 Missense_Mutation p.G1201W 0.25 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 16 1840578 1840578 G A IGFALS 3'UTR 0.30 TCGA-AZ-6601-01 16 18470996 18470996 C T NPIPA7 5'Flank 0.23 TCGA-AZ-6601-01 16 20448594 20448594 C T ACSM5 Missense_Mutation p.R481W 0.22 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 16 20873699 20873699 G A DCUN1D3 Silent p.N54N 0.28 TCGA-AZ-6601-01 16 20948047 20948047 G A DNAH3 Missense_Mutation p.A3928V 0.13 deleterious(0.04) benign(0.072) TCGA-AZ-6601-01 16 2098593 2098593 T C TSC2 5'UTR 0.19 TCGA-AZ-6601-01 16 21053388 21053388 G A DNAH3 Silent p.P1533P 0.24 TCGA-AZ-6601-01 16 21145715 21145715 C T DNAH3 Missense_Mutation p.R316H 0.18 tolerated(0.24) benign(0.002) TCGA-AZ-6601-01 16 2129068 2129068 G T TSC2 Missense_Mutation p.G1001V 0.12 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 16 2160526 2160526 C T PKD1 Missense_Mutation p.V1548M 0.31 possibly_damaging(0.908) TCGA-AZ-6601-01 16 2161064 2161064 C T PKD1 Silent p.A1368A 0.22 TCGA-AZ-6601-01 16 2226572 2226572 C T TRAF7 Silent p.C670C 0.12 TCGA-AZ-6601-01 16 22358876 22358876 G A CDR2 Nonsense_Mutation p.Q259* 0.14 TCGA-AZ-6601-01 16 2236769 2236769 C T CASKIN1 Silent p.T329T 0.25 TCGA-AZ-6601-01 16 2314208 2314208 G A RNPS1 Missense_Mutation p.R66C 0.23 tolerated_low_confidence(0.06) unknown(0) TCGA-AZ-6601-01 16 23702651 23702651 G A ERN2 Silent p.H872H 0.20 TCGA-AZ-6601-01 16 2373370 2373370 G A ABCA3 Intron 0.27 TCGA-AZ-6601-01 16 2436215 2436215 C T ABCA17P RNA 0.32 TCGA-AZ-6601-01 16 24802132 24802132 G T TNRC6A Missense_Mutation p.W723C 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 16 24835214 24835214 C T TNRC6A 3'UTR 0.22 TCGA-AZ-6601-01 16 2506927 2506927 C T CCNF Missense_Mutation p.P756L 0.21 tolerated_low_confidence(0.47) benign(0.002) TCGA-AZ-6601-01 16 2522609 2522609 C T NTN3 Missense_Mutation p.R303W 0.15 deleterious(0.01) benign(0.02) TCGA-AZ-6601-01 16 2580610 2580610 G A CEMP1 Silent p.R155R 0.20 TCGA-AZ-6601-01 16 27221852 27221852 C T KDM8 Silent p.D174D 0.24 TCGA-AZ-6601-01 16 27374064 27374064 C A IL4R Missense_Mutation p.P464H 0.23 deleterious(0.01) possibly_damaging(0.868) TCGA-AZ-6601-01 16 27784442 27784442 C T KIAA0556 Silent p.L1407L 0.16 TCGA-AZ-6601-01 16 27784500 27784500 C T KIAA0556 Nonsense_Mutation p.R1427* 0.21 TCGA-AZ-6601-01 16 2817237 2817237 T G SRRM2 Silent p.S2236S 0.11 TCGA-AZ-6601-01 16 28328837 28328837 G A SBK1 Missense_Mutation p.R42H 0.23 deleterious(0.01) possibly_damaging(0.644) TCGA-AZ-6601-01 16 28503067 28503067 G A CLN3 Missense_Mutation p.A5V 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.464) TCGA-AZ-6601-01 16 28511128 28511128 C T IL27 Silent p.P192P 0.25 TCGA-AZ-6601-01 16 28601750 28601750 C A CCDC101 Missense_Mutation p.H185N 0.29 tolerated(0.52) benign(0.014) TCGA-AZ-6601-01 16 28847725 28847725 C T ATXN2L Missense_Mutation p.S1073L 0.21 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-AZ-6601-01 16 28855623 28855623 G A TUFM Missense_Mutation p.R284C 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-AZ-6601-01 16 28889924 28889924 G A ATP2A1 5'UTR 0.35 TCGA-AZ-6601-01 16 28969898 28969898 C A NFATC2IP Intron 0.24 TCGA-AZ-6601-01 16 29990316 29990316 A G TAOK2 Missense_Mutation p.E125G 0.30 deleterious(0) probably_damaging(0.99) TCGA-AZ-6601-01 16 30012816 30012816 C T INO80E Missense_Mutation p.R160W 0.18 deleterious(0) benign(0.19) TCGA-AZ-6601-01 16 30316374 30316374 A G RP11-347C12.2 Splice_Site 0.23 TCGA-AZ-6601-01 16 30376899 30376899 C T TBC1D10B Missense_Mutation p.V325M 0.24 deleterious(0.02) benign(0.03) TCGA-AZ-6601-01 16 30581504 30581504 G A ZNF688 Silent p.C188C 0.24 TCGA-AZ-6601-01 16 30594330 30594330 C T ZNF785 Missense_Mutation p.A257T 0.25 tolerated(0.47) benign(0.114) TCGA-AZ-6601-01 16 30664136 30664136 G A PRR14 Missense_Mutation p.R96Q 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-AZ-6601-01 16 30676123 30676123 G A FBRS Missense_Mutation p.R482Q 0.30 possibly_damaging(0.448) TCGA-AZ-6601-01 16 30774592 30774592 C T RNF40 Missense_Mutation p.R96C 0.33 deleterious(0) probably_damaging(0.979) TCGA-AZ-6601-01 16 30794712 30794712 C T ZNF629 Missense_Mutation p.A313T 0.07 tolerated(1) probably_damaging(1) TCGA-AZ-6601-01 16 3080470 3080470 G A CCDC64B Missense_Mutation p.R248W 0.40 deleterious(0.01) probably_damaging(0.929) TCGA-AZ-6601-01 16 30900103 30900103 G A BCL7C Intron 0.16 TCGA-AZ-6601-01 16 30977492 30977492 G A SETD1A Missense_Mutation p.V764I 0.13 benign(0.007) TCGA-AZ-6601-01 16 31073509 31073509 G A ZNF668 Missense_Mutation p.A270V 0.14 deleterious(0.02) probably_damaging(0.939) TCGA-AZ-6601-01 16 31091543 31091543 C T ZNF646 Missense_Mutation p.R1300C 0.19 deleterious(0.02) possibly_damaging(0.736) TCGA-AZ-6601-01 16 31500623 31500623 G A SLC5A2 Silent p.T543T 0.25 TCGA-AZ-6601-01 16 31510675 31510675 G T C16orf58 Missense_Mutation p.P183H 0.27 deleterious(0.03) probably_damaging(0.99) TCGA-AZ-6601-01 16 3254568 3254568 G A OR1F1 Missense_Mutation p.V108M 0.16 tolerated(0.05) benign(0.068) TCGA-AZ-6601-01 16 3254672 3254672 C A OR1F1 Silent p.A142A 0.14 TCGA-AZ-6601-01 16 3299718 3299718 C A MEFV Missense_Mutation p.G325C 0.14 tolerated(0.06) possibly_damaging(0.796) TCGA-AZ-6601-01 16 338227 338227 G A AXIN1 Silent p.S828S 0.28 TCGA-AZ-6601-01 16 3486818 3486818 G T ZNF597 Missense_Mutation p.P294H 0.27 tolerated(0.11) benign(0.339) TCGA-AZ-6601-01 16 3641302 3641302 C T SLX4 Silent p.V779V 0.25 TCGA-AZ-6601-01 16 3778362 3778362 C T CREBBP Missense_Mutation p.G2229D 0.35 unknown(0) TCGA-AZ-6601-01 16 3820934 3820934 C A CREBBP Missense_Mutation p.Q839H 0.16 benign(0.354) TCGA-AZ-6601-01 16 3828768 3828768 C T CREBBP Missense_Mutation p.R625H 0.23 probably_damaging(1) TCGA-AZ-6601-01 16 418566 418566 G C MRPL28 Missense_Mutation p.R171G 0.20 deleterious(0.04) possibly_damaging(0.688) TCGA-AZ-6601-01 16 4245694 4245694 C T SRL Missense_Mutation p.R157H 0.19 tolerated(0.1) probably_damaging(0.97) TCGA-AZ-6601-01 16 4513813 4513813 C T NMRAL1 Missense_Mutation p.V190M 0.14 deleterious(0) probably_damaging(0.971) TCGA-AZ-6601-01 16 4564057 4564057 C T CDIP1 Silent p.P25P 0.23 TCGA-AZ-6601-01 16 46694328 46694328 G A VPS35 3'UTR 0.18 TCGA-AZ-6601-01 16 4701982 4701983 - C MGRN1 Frame_Shift_Ins p.H78Pfs*102 0.21 TCGA-AZ-6601-01 16 4736352 4736352 G T MGRN1 Intron 0.09 TCGA-AZ-6601-01 16 4933359 4933359 G A PPL 3'UTR 0.14 TCGA-AZ-6601-01 16 50326705 50326705 G A ADCY7 Missense_Mutation p.R219H 0.24 deleterious(0) probably_damaging(0.912) TCGA-AZ-6601-01 16 50338382 50338382 G A ADCY7 Missense_Mutation p.A494T 0.18 deleterious(0.03) probably_damaging(0.963) TCGA-AZ-6601-01 16 50667215 50667215 C T NKD1 Silent p.G312G 0.27 TCGA-AZ-6601-01 16 5122059 5122059 G A ALG1 Splice_Site p.X70_splice 0.24 TCGA-AZ-6601-01 16 54967549 54967549 G A IRX5 Missense_Mutation p.A406T 0.11 deleterious(0.01) unknown(0) TCGA-AZ-6601-01 16 55360255 55360255 C T IRX6 Missense_Mutation p.A18V 0.16 tolerated(1) benign(0) TCGA-AZ-6601-01 16 55364394 55364394 G A IRX6 3'UTR 0.15 TCGA-AZ-6601-01 16 56899198 56899198 C T SLC12A3 Silent p.S17S 0.25 TCGA-AZ-6601-01 16 570231 570231 G A RAB11FIP3 Missense_Mutation p.R657H 0.36 deleterious(0.03) benign(0.225) TCGA-AZ-6601-01 16 57151438 57151438 G A CPNE2 Missense_Mutation p.V156I 0.29 tolerated(0.35) benign(0.007) TCGA-AZ-6601-01 16 57188300 57188300 C T FAM192A Missense_Mutation p.D223N 0.27 deleterious(0.01) benign(0.01) TCGA-AZ-6601-01 16 57507276 57507276 G A DOK4 3'UTR 0.25 TCGA-AZ-6601-01 16 58043997 58043997 C T USB1 Missense_Mutation p.R144C 0.14 tolerated(0.12) benign(0.135) TCGA-AZ-6601-01 16 58073843 58073843 C T MMP15 Missense_Mutation p.R169C 0.11 deleterious(0.02) possibly_damaging(0.8) TCGA-AZ-6601-01 16 66974489 66974489 C T CES2 Missense_Mutation p.S300L 0.19 tolerated(0.13) benign(0.111) TCGA-AZ-6601-01 16 67188824 67188824 C T TRADD Missense_Mutation p.A223T 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 16 67233612 67233612 T C ELMO3 Missense_Mutation p.Y102H 0.28 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 16 67323536 67323536 A G KCTD19 Missense_Mutation p.I906T 0.31 deleterious(0.04) benign(0.008) TCGA-AZ-6601-01 16 67469967 67469967 G A HSD11B2 Missense_Mutation p.A196T 0.32 tolerated(0.84) benign(0.01) TCGA-AZ-6601-01 16 67477005 67477005 G T ATP6V0D1 Nonsense_Mutation p.Y186* 0.21 TCGA-AZ-6601-01 16 67662323 67662323 C T CTCF Silent p.Y523Y 0.23 TCGA-AZ-6601-01 16 67697068 67697068 T C ENKD1 Missense_Mutation p.D346G 0.15 deleterious_low_confidence(0.04) benign(0.006) TCGA-AZ-6601-01 16 67762350 67762350 G A RANBP10 Missense_Mutation p.R473C 0.19 tolerated(0.05) possibly_damaging(0.908) TCGA-AZ-6601-01 16 67899133 67899133 G A NUTF2 Splice_Site p.X33_splice 0.15 TCGA-AZ-6601-01 16 67976843 67976843 G A LCAT Silent p.N116N 0.18 TCGA-AZ-6601-01 16 67979110 67979110 C T SLC12A4 Missense_Mutation p.V1018M 0.31 deleterious(0.02) possibly_damaging(0.908) TCGA-AZ-6601-01 16 67983705 67983705 G T SLC12A4 Silent p.S584S 0.28 TCGA-AZ-6601-01 16 68112355 68112355 G A DUS2 Missense_Mutation p.R393H 0.08 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 16 68381168 68381168 G A PRMT7 Missense_Mutation p.V416M 0.20 tolerated(0.31) benign(0.009) TCGA-AZ-6601-01 16 69167474 69167474 G T CIRH1A Missense_Mutation p.G38C 0.14 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 16 69199332 69199332 G T CIRH1A Missense_Mutation p.R579M 0.23 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 16 70187433 70187433 C T PDPR Missense_Mutation p.T731M 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 16 70208171 70208171 C A CLEC18C 5'UTR 0.22 TCGA-AZ-6601-01 16 70220684 70220684 A G CLEC18C 3'UTR 0.09 TCGA-AZ-6601-01 16 70841641 70841641 G A HYDIN Missense_Mutation p.R5070W 0.21 probably_damaging(0.942) TCGA-AZ-6601-01 16 708564 708564 C T WDR90 Missense_Mutation p.L936F 0.27 tolerated(0.21) possibly_damaging(0.526) TCGA-AZ-6601-01 16 71668551 71668551 G A MARVELD3 Intron 0.19 TCGA-AZ-6601-01 16 72122960 72122960 T C TXNL4B Silent p.T70T 0.17 TCGA-AZ-6601-01 16 72821750 72821750 G A ZFHX3 Silent p.S3475S 0.14 TCGA-AZ-6601-01 16 72829643 72829643 C T ZFHX3 Missense_Mutation p.R2313H 0.24 probably_damaging(0.984) TCGA-AZ-6601-01 16 736959 736959 G A WDR24 Missense_Mutation p.R373W 0.38 deleterious(0) probably_damaging(0.978) TCGA-AZ-6601-01 16 739435 739435 C T WDR24 Missense_Mutation p.R69H 0.22 deleterious(0) probably_damaging(0.982) TCGA-AZ-6601-01 16 75148864 75148864 G A LDHD Silent p.G110G 0.26 TCGA-AZ-6601-01 16 7680655 7680655 G A RBFOX1 Missense_Mutation p.A263T 0.20 tolerated(0.48) benign(0.047) TCGA-AZ-6601-01 16 77759414 77759414 C A NUDT7 Missense_Mutation p.S41Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 16 77859275 77859275 G A VAT1L Missense_Mutation p.V166I 0.23 tolerated(0.95) benign(0.09) TCGA-AZ-6601-01 16 778875 778875 G T HAGHL Missense_Mutation p.A194S 0.19 tolerated(0.18) possibly_damaging(0.544) TCGA-AZ-6601-01 16 781652 781652 G A NARFL Missense_Mutation p.S316L 0.21 deleterious(0) probably_damaging(0.994) TCGA-AZ-6601-01 16 789680 789680 C T NARFL Missense_Mutation p.R42H 0.29 tolerated(0.33) benign(0.001) TCGA-AZ-6601-01 16 789807 789807 A G NARFL Intron 0.22 TCGA-AZ-6601-01 16 81062335 81062335 T C CENPN Intron 0.09 TCGA-AZ-6601-01 16 84063119 84063119 T C SLC38A8 Missense_Mutation p.T224A 0.13 deleterious(0) possibly_damaging(0.85) TCGA-AZ-6601-01 16 84125375 84125375 C T MBTPS1 Missense_Mutation p.G309S 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 16 84801894 84801894 T C USP10 Missense_Mutation p.V643A 0.22 deleterious(0) probably_damaging(0.982) TCGA-AZ-6601-01 16 85701871 85701871 C T GSE1 Missense_Mutation p.P1086S 0.17 tolerated(0.06) benign(0.067) TCGA-AZ-6601-01 16 85936598 85936598 G A IRF8 Intron 0.25 TCGA-AZ-6601-01 16 87393948 87393948 C T FBXO31 Missense_Mutation p.R122Q 0.17 tolerated(1) probably_damaging(0.93) TCGA-AZ-6601-01 16 87795562 87795562 A T KLHDC4 Missense_Mutation p.S62T 0.32 tolerated(0.29) benign(0.125) TCGA-AZ-6601-01 16 88719738 88719738 G A MVD Silent p.P364P 0.10 TCGA-AZ-6601-01 16 88752807 88752807 C T SNAI3 Missense_Mutation p.R3H 0.10 deleterious(0) possibly_damaging(0.522) TCGA-AZ-6601-01 16 88793992 88793992 G A PIEZO1 Missense_Mutation p.R1092W 0.23 deleterious(0.02) benign(0.386) TCGA-AZ-6601-01 16 88901747 88901747 C T GALNS Missense_Mutation p.V258I 0.30 tolerated(0.27) benign(0.176) TCGA-AZ-6601-01 16 89180886 89180886 C T ACSF3 Missense_Mutation p.R373C 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 16 89334910 89334910 G A AC137932.1 Missense_Mutation p.R131H 0.19 possibly_damaging(0.711) TCGA-AZ-6601-01 16 89934600 89934600 C T SPIRE2 Silent p.A594A 0.04 TCGA-AZ-6601-01 16 90001416 90001416 C T TUBB3 Missense_Mutation p.T186M 0.23 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-AZ-6601-01 16 9196948 9196948 C T C16orf72 Missense_Mutation p.R139C 0.20 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 17 10544634 10544634 C T MYH3 Missense_Mutation p.R672H 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 17 11461506 11461506 C T SHISA6 Missense_Mutation p.T514M 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-AZ-6601-01 17 1340206 1340206 C T CRK Missense_Mutation p.R162Q 0.20 deleterious(0.01) benign(0.046) TCGA-AZ-6601-01 17 1381399 1381399 G A MYO1C Silent p.Y461Y 0.24 TCGA-AZ-6601-01 17 1451627 1451627 G A PITPNA Silent p.H84H 0.31 TCGA-AZ-6601-01 17 1478877 1478877 G A SLC43A2 3'UTR 0.18 TCGA-AZ-6601-01 17 15619999 15619999 G A ZNF286A Missense_Mutation p.V321I 0.15 tolerated(0.41) benign(0.006) TCGA-AZ-6601-01 17 15995233 15995233 C T NCOR1 Missense_Mutation p.C987Y 0.17 benign(0.001) TCGA-AZ-6601-01 17 16097784 16097784 G T NCOR1 Missense_Mutation p.H34N 0.16 probably_damaging(0.985) TCGA-AZ-6601-01 17 1637429 1637429 G A WDR81 Missense_Mutation p.V1700I 0.65 tolerated(0.3) benign(0.03) TCGA-AZ-6601-01 17 17184503 17184503 T C COPS3 5'UTR 0.09 TCGA-AZ-6601-01 17 18181299 18181299 G A TOP3A Silent p.N839N 0.23 TCGA-AZ-6601-01 17 18220272 18220272 C A SMCR8 Missense_Mutation p.P390H 0.17 tolerated(0.18) benign(0.088) TCGA-AZ-6601-01 17 18226336 18226336 C T SMCR8 Silent p.H922H 0.20 TCGA-AZ-6601-01 17 18232648 18232648 G A SHMT1 Missense_Mutation p.T409M 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 17 18257053 18257053 G A SHMT1 Nonsense_Mutation p.R59* 0.17 TCGA-AZ-6601-01 17 18397683 18397683 C T LGALS9C 3'UTR 0.34 TCGA-AZ-6601-01 17 18682468 18682468 G A FBXW10 Missense_Mutation p.A1006T 0.08 tolerated(0.09) benign(0.081) TCGA-AZ-6601-01 17 18832241 18832241 C T PRPSAP2 Missense_Mutation p.R308W 0.08 deleterious(0) possibly_damaging(0.696) TCGA-AZ-6601-01 17 18918398 18918398 C T SLC5A10 Missense_Mutation p.A392V 0.15 deleterious(0) possibly_damaging(0.885) TCGA-AZ-6601-01 17 19247048 19247048 T G B9D1 Intron 0.12 TCGA-AZ-6601-01 17 19318621 19318621 G T RNF112 Missense_Mutation p.R440M 0.19 deleterious(0.01) possibly_damaging(0.706) TCGA-AZ-6601-01 17 19619913 19619913 C T SLC47A2 5'UTR 0.33 TCGA-AZ-6601-01 17 19699490 19699490 G A ULK2 Missense_Mutation p.P639S 0.25 deleterious(0.02) benign(0.103) TCGA-AZ-6601-01 17 20224871 20224871 T G AC004702.2 Intron 0.18 TCGA-AZ-6601-01 17 20799409 20799409 G A CCDC144NL 5'UTR 0.13 TCGA-AZ-6601-01 17 21322731 21322731 T C KCNJ12 3'UTR 0.07 TCGA-AZ-6601-01 17 21433823 21433823 C A C17orf51 3'UTR 0.30 TCGA-AZ-6601-01 17 21825535 21825535 C T FAM27L RNA 0.06 TCGA-AZ-6601-01 17 25749152 25749152 G A TBC1D3P5 RNA 0.30 TCGA-AZ-6601-01 17 26816246 26816246 G A SLC13A2 Silent p.A39A 0.26 TCGA-AZ-6601-01 17 26898078 26898078 T C PIGS Missense_Mutation p.N55D 0.19 tolerated(0.82) benign(0.002) TCGA-AZ-6601-01 17 27067871 27067871 C A NEK8 Missense_Mutation p.L534M 0.19 tolerated(0.19) benign(0.153) TCGA-AZ-6601-01 17 27086464 27086464 C T FAM222B Silent p.T171T 0.11 TCGA-AZ-6601-01 17 27284515 27284515 C T SEZ6 Missense_Mutation p.R782H 0.23 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 17 27424342 27424342 G A MYO18A Missense_Mutation p.R1377W 0.21 deleterious(0.03) probably_damaging(1) TCGA-AZ-6601-01 17 27447685 27447685 G T MYO18A Silent p.I559I 0.12 TCGA-AZ-6601-01 17 27889748 27889748 C T ABHD15 Missense_Mutation p.R413Q 0.28 tolerated(0.11) benign(0.006) TCGA-AZ-6601-01 17 30267486 30267486 T C SUZ12 Missense_Mutation p.S123P 0.23 deleterious(0.03) possibly_damaging(0.709) TCGA-AZ-6601-01 17 30533949 30533949 G A RHOT1 Silent p.S479S 0.16 TCGA-AZ-6601-01 17 30796051 30796051 C T PSMD11 Silent p.D161D 0.29 TCGA-AZ-6601-01 17 30807614 30807614 G A PSMD11 Missense_Mutation p.D412N 0.09 deleterious(0.02) benign(0.414) TCGA-AZ-6601-01 17 30817222 30817222 G A CDK5R1 3'UTR 0.28 TCGA-AZ-6601-01 17 3119685 3119685 G A OR1A1 Silent p.T257T 0.17 TCGA-AZ-6601-01 17 32647367 32647367 A G CCL8 Silent p.T52T 0.15 TCGA-AZ-6601-01 17 32963042 32963042 C T TMEM132E Missense_Mutation p.T575M 0.25 tolerated(0.09) benign(0.043) TCGA-AZ-6601-01 17 33482323 33482323 G A UNC45B Silent p.V216V 0.19 TCGA-AZ-6601-01 17 33520478 33520478 G A SLC35G3 Silent p.C283C 0.21 TCGA-AZ-6601-01 17 33586248 33586248 G A SLFN5 Missense_Mutation p.R180Q 0.22 tolerated(0.8) benign(0.002) TCGA-AZ-6601-01 17 34062408 34062408 A G RASL10B Missense_Mutation p.N69D 0.23 tolerated(0.22) benign(0.042) TCGA-AZ-6601-01 17 3477158 3477158 G A SHPK Silent p.P624P 0.25 TCGA-AZ-6601-01 17 3495378 3495378 G A TRPV1 Silent p.D89D 0.16 TCGA-AZ-6601-01 17 35550326 35550326 C T ACACA Missense_Mutation p.A1397T 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-6601-01 17 35800621 35800621 T A TADA2A Missense_Mutation p.N100K 0.29 tolerated(0.83) benign(0.014) TCGA-AZ-6601-01 17 35880645 35880645 C T SYNRG Missense_Mutation p.S1258N 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-6601-01 17 3594952 3594952 C T P2RX5 Missense_Mutation p.V92I 0.22 tolerated(0.07) probably_damaging(0.963) TCGA-AZ-6601-01 17 3660367 3660367 G A ITGAE Missense_Mutation p.P361L 0.25 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 17 36863212 36863212 G A MLLT6 Missense_Mutation p.G40D 0.26 deleterious(0) unknown(0) TCGA-AZ-6601-01 17 36865777 36865777 G T MLLT6 Missense_Mutation p.E167D 0.26 tolerated(0.18) unknown(0) TCGA-AZ-6601-01 17 36958406 36958406 C T CWC25 Missense_Mutation p.R406Q 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-6601-01 17 37370564 37370564 C T STAC2 Missense_Mutation p.R288Q 0.25 tolerated(0.14) probably_damaging(0.98) TCGA-AZ-6601-01 17 3769172 3769172 C A CAMKK1 3'UTR 0.25 TCGA-AZ-6601-01 17 37809886 37809886 G A STARD3 Silent p.S34S 0.19 TCGA-AZ-6601-01 17 37840957 37840957 C T PGAP3 Missense_Mutation p.V109M 0.17 tolerated(0.2) benign(0.097) TCGA-AZ-6601-01 17 37879595 37879595 C T ERBB2 Missense_Mutation p.A657V 0.22 tolerated(0.3) benign(0.063) TCGA-AZ-6601-01 17 38133172 38133172 C T GSDMA Missense_Mutation p.T400M 0.29 deleterious(0.01) probably_damaging(1) TCGA-AZ-6601-01 17 38172791 38172791 G A CSF3 Silent p.L122L 0.14 TCGA-AZ-6601-01 17 38190001 38190001 C T MED24 Intron 0.67 TCGA-AZ-6601-01 17 38244662 38244662 C T THRA Silent p.D297D 0.28 TCGA-AZ-6601-01 17 3848054 3848054 C T ATP2A3 Missense_Mutation p.V411M 0.29 tolerated(0.07) benign(0.071) TCGA-AZ-6601-01 17 38510560 38510560 C T RARA Missense_Mutation p.R272W 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 17 38907525 38907525 G A KRT25 Silent p.N241N 0.08 TCGA-AZ-6601-01 17 38953433 38953433 G A KRT28 Missense_Mutation p.A264V 0.24 deleterious(0.01) possibly_damaging(0.869) TCGA-AZ-6601-01 17 3910145 3910145 G A ZZEF1 3'UTR 0.19 TCGA-AZ-6601-01 17 39135111 39135111 G A KRT40 Missense_Mutation p.R381W 0.24 deleterious(0.04) possibly_damaging(0.88) TCGA-AZ-6601-01 17 39471576 39471576 G A KRTAP17-1 3'UTR 0.12 TCGA-AZ-6601-01 17 39471743 39471743 C T KRTAP17-1 Missense_Mutation p.G54R 0.43 unknown(0) TCGA-AZ-6601-01 17 39727805 39727805 C T KRT9 Missense_Mutation p.G147D 0.24 deleterious(0.04) unknown(0) TCGA-AZ-6601-01 17 39783184 39783184 G T KRT17 5'Flank 0.26 TCGA-AZ-6601-01 17 40705591 40705591 G A HSD17B1 Missense_Mutation p.G134S 0.20 tolerated(0.13) benign(0.085) TCGA-AZ-6601-01 17 40837073 40837073 C T CNTNAP1 Missense_Mutation p.A143V 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 17 40934940 40934940 G A WNK4 Silent p.T261T 0.09 TCGA-AZ-6601-01 17 4145670 4145670 C T ANKFY1 Silent p.A70A 0.19 TCGA-AZ-6601-01 17 42157801 42157801 G - HDAC5 Frame_Shift_Del p.I933Lfs*14 0.25 TCGA-AZ-6601-01 17 42225498 42225498 C T C17orf53 Silent p.S109S 0.23 TCGA-AZ-6601-01 17 42275498 42275498 G A ATXN7L3 5'Flank 0.08 TCGA-AZ-6601-01 17 42335832 42335832 G A SLC4A1 Missense_Mutation p.R346C 0.18 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 17 42340290 42340290 G A SLC4A1 5'UTR 0.25 TCGA-AZ-6601-01 17 42397473 42397473 G A SLC25A39 Missense_Mutation p.R326W 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-AZ-6601-01 17 42851705 42851705 G - ADAM11 Frame_Shift_Del p.G347Afs*11 0.22 TCGA-AZ-6601-01 17 42942346 42942346 G A EFTUD2 Missense_Mutation p.R413C 0.23 deleterious(0) probably_damaging(0.952) TCGA-AZ-6601-01 17 43531194 43531194 G A PLEKHM1 Missense_Mutation p.S675L 0.22 deleterious(0.03) benign(0.054) TCGA-AZ-6601-01 17 44076726 44076726 C T STH Silent p.C27C 0.22 TCGA-AZ-6601-01 17 4451487 4451487 C T MYBBP1A Missense_Mutation p.V559M 0.11 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 17 4461332 4461332 C T GGT6 Missense_Mutation p.C487Y 0.31 deleterious(0.03) probably_damaging(0.994) TCGA-AZ-6601-01 17 44617597 44617597 C T LRRC37A2 Missense_Mutation p.P988S 0.12 tolerated(0.08) probably_damaging(0.979) TCGA-AZ-6601-01 17 45299153 45299153 G A MYL4 Missense_Mutation p.R140H 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-6601-01 17 45897128 45897128 G A OSBPL7 Silent p.D74D 0.33 TCGA-AZ-6601-01 17 45925553 45925553 C T SP6 Silent p.L81L 0.20 TCGA-AZ-6601-01 17 47583926 47583926 C A NGFR Silent p.A158A 0.29 TCGA-AZ-6601-01 17 48050512 48050512 C T DLX4 Missense_Mutation p.P120L 0.10 deleterious(0) probably_damaging(0.969) TCGA-AZ-6601-01 17 4805647 4805647 C T C17orf107 3'UTR 0.20 TCGA-AZ-6601-01 17 48148762 48148762 C T ITGA3 Missense_Mutation p.A280V 0.17 deleterious(0) probably_damaging(0.969) TCGA-AZ-6601-01 17 48151514 48151514 C A ITGA3 Missense_Mutation p.H418N 0.20 tolerated(0.34) benign(0.062) TCGA-AZ-6601-01 17 4836257 4836257 G A GP1BA Missense_Mutation p.V120I 0.22 tolerated(0.95) benign(0.014) TCGA-AZ-6601-01 17 48458242 48458242 G A EME1 Missense_Mutation p.R565H 0.20 deleterious(0.03) possibly_damaging(0.567) TCGA-AZ-6601-01 17 48631776 48631776 C T SPATA20 Missense_Mutation p.R708C 0.28 tolerated(0.21) benign(0.005) TCGA-AZ-6601-01 17 48649924 48649924 C T CACNA1G Silent p.S252S 0.24 TCGA-AZ-6601-01 17 4872516 4872516 C T CAMTA2 Silent p.Q1156Q 0.21 TCGA-AZ-6601-01 17 4876474 4876474 G T CAMTA2 Missense_Mutation p.P782H 0.19 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 17 49057182 49057182 G T SPAG9 Missense_Mutation p.L1112I 0.18 deleterious(0) probably_damaging(0.977) TCGA-AZ-6601-01 17 49297796 49297796 G A MBTD1 Silent p.G61G 0.16 TCGA-AZ-6601-01 17 5118082 5118082 C T SCIMP Intron 0.39 TCGA-AZ-6601-01 17 53345267 53345267 T - HLF Frame_Shift_Del p.L92Cfs*114 0.15 TCGA-AZ-6601-01 17 55074373 55074373 G A SCPEP1 Silent p.T279T 0.19 TCGA-AZ-6601-01 17 55191959 55191959 C A AKAP1 Missense_Mutation p.S748Y 0.11 deleterious(0) probably_damaging(0.971) TCGA-AZ-6601-01 17 55948717 55948717 G A CUEDC1 Silent p.Y266Y 0.17 TCGA-AZ-6601-01 17 56729347 56729347 G A TEX14 Missense_Mutation p.R6C 0.24 deleterious(0.02) benign(0.006) TCGA-AZ-6601-01 17 59093255 59093255 C T BCAS3 Nonsense_Mutation p.R544* 0.25 TCGA-AZ-6601-01 17 59543270 59543270 C T TBX4 Silent p.D124D 0.21 TCGA-AZ-6601-01 17 59560345 59560345 C - TBX4 Frame_Shift_Del p.P371Lfs*8 0.26 TCGA-AZ-6601-01 17 60814123 60814123 G A MARCH10 Missense_Mutation p.A369V 0.23 tolerated(1) benign(0.001) TCGA-AZ-6601-01 17 61315421 61315421 G A TANC2 Missense_Mutation p.R265Q 0.27 deleterious(0) probably_damaging(0.981) TCGA-AZ-6601-01 17 61498968 61498968 C T TANC2 Silent p.T1875T 0.21 TCGA-AZ-6601-01 17 61499110 61499110 C T TANC2 Missense_Mutation p.H1923Y 0.09 tolerated_low_confidence(0.19) benign(0.096) TCGA-AZ-6601-01 17 61557832 61557832 C T ACE Missense_Mutation p.R264C 0.19 deleterious(0) probably_damaging(0.94) TCGA-AZ-6601-01 17 61611392 61611392 C T KCNH6 Missense_Mutation p.T274M 0.27 deleterious(0) possibly_damaging(0.868) TCGA-AZ-6601-01 17 61824265 61824265 T C CCDC47 Silent p.K476K 0.23 TCGA-AZ-6601-01 17 61914888 61914888 G T SMARCD2 Missense_Mutation p.P105H 0.08 deleterious(0) possibly_damaging(0.635) TCGA-AZ-6601-01 17 62131674 62131674 C T ERN1 Missense_Mutation p.C630Y 0.17 deleterious(0) possibly_damaging(0.74) TCGA-AZ-6601-01 17 62290289 62290289 G A TEX2 Missense_Mutation p.T430M 0.22 tolerated(0.17) benign(0.038) TCGA-AZ-6601-01 17 62290956 62290956 C T TEX2 Missense_Mutation p.A208T 0.22 tolerated(0.62) benign(0.001) TCGA-AZ-6601-01 17 62582231 62582231 C T SMURF2 Missense_Mutation p.R153H 0.29 tolerated(0.18) benign(0.411) TCGA-AZ-6601-01 17 65040806 65040806 C T CACNG1 Silent p.R10R 0.32 TCGA-AZ-6601-01 17 66303502 66303502 C T ARSG 5'UTR 0.22 TCGA-AZ-6601-01 17 66873754 66873754 C T ABCA8 Missense_Mutation p.A1329T 0.22 tolerated(0.72) benign(0.06) TCGA-AZ-6601-01 17 67160291 67160291 T A ABCA10 Missense_Mutation p.D1096V 0.21 tolerated(0.42) benign(0) TCGA-AZ-6601-01 17 67217947 67217947 C T ABCA10 Missense_Mutation p.A97T 0.28 deleterious(0.03) possibly_damaging(0.768) TCGA-AZ-6601-01 17 6930864 6930864 C T BCL6B Missense_Mutation p.R456W 0.29 deleterious(0) probably_damaging(0.976) TCGA-AZ-6601-01 17 6939733 6939733 G A SLC16A13 Missense_Mutation p.G11D 0.19 deleterious(0.04) probably_damaging(1) TCGA-AZ-6601-01 17 6979360 6979360 T G CLEC10A Missense_Mutation p.Q155P 0.23 deleterious(0) benign(0.282) TCGA-AZ-6601-01 17 70119050 70119050 C T SOX9 Nonsense_Mutation p.Q208* 0.26 TCGA-AZ-6601-01 17 71232703 71232703 C T C17orf80 Missense_Mutation p.T361M 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-AZ-6601-01 17 71434243 71434243 G A SDK2 Missense_Mutation p.S259L 0.27 tolerated(0.08) benign(0.036) TCGA-AZ-6601-01 17 7187654 7187654 G A SLC2A4 Missense_Mutation p.R228H 0.23 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 17 72739304 72739304 G A RAB37 Missense_Mutation p.V100I 0.24 tolerated(0.49) possibly_damaging(0.474) TCGA-AZ-6601-01 17 72786436 72786436 G A TMEM104 Splice_Site p.X116_splice 0.27 TCGA-AZ-6601-01 17 72838634 72838634 C T GRIN2C Silent p.T1214T 0.24 TCGA-AZ-6601-01 17 72915905 72915905 C T USH1G Silent p.P342P 0.29 TCGA-AZ-6601-01 17 72948031 72948031 G A HID1 Missense_Mutation p.R758C 0.24 deleterious(0) probably_damaging(0.927) TCGA-AZ-6601-01 17 7348445 7348445 C T CHRNB1 5'UTR 0.09 TCGA-AZ-6601-01 17 73496985 73496985 C A CASKIN2 3'UTR 0.20 TCGA-AZ-6601-01 17 73502960 73502960 G A CASKIN2 Nonsense_Mutation p.Q136* 0.16 TCGA-AZ-6601-01 17 7369601 7369601 G A ZBTB4 Missense_Mutation p.R174C 0.34 possibly_damaging(0.876) TCGA-AZ-6601-01 17 73751174 73751174 C T ITGB4 Intron 0.23 TCGA-AZ-6601-01 17 74011617 74011617 G A EVPL Silent p.P601P 0.17 TCGA-AZ-6601-01 17 74014603 74014603 C T EVPL Missense_Mutation p.G455R 0.24 deleterious(0.02) possibly_damaging(0.852) TCGA-AZ-6601-01 17 74148537 74148537 G A RNF157 Missense_Mutation p.T607M 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-AZ-6601-01 17 74303650 74303650 C T QRICH2 5'UTR 0.07 TCGA-AZ-6601-01 17 75187306 75187306 T C SEC14L1 Missense_Mutation p.L86P 0.11 deleterious(0) probably_damaging(0.923) TCGA-AZ-6601-01 17 75192333 75192333 G A SEC14L1 Silent p.P253P 0.11 TCGA-AZ-6601-01 17 75196599 75196599 C T SEC14L1 Missense_Mutation p.R285C 0.25 deleterious(0) probably_damaging(0.983) TCGA-AZ-6601-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.25 tolerated(0.11) benign(0.308) TCGA-AZ-6601-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.22 TCGA-AZ-6601-01 17 76128890 76128890 G A TMC8 Missense_Mutation p.R157H 0.08 tolerated(0.3) benign(0) TCGA-AZ-6601-01 17 76354588 76354588 C T SOCS3 Missense_Mutation p.V197I 0.16 tolerated(0.2) possibly_damaging(0.688) TCGA-AZ-6601-01 17 7643239 7643239 G A DNAH2 Nonsense_Mutation p.W453* 0.10 TCGA-AZ-6601-01 17 76503728 76503728 C T DNAH17 Missense_Mutation p.A1462T 0.20 benign(0.063) TCGA-AZ-6601-01 17 76794466 76794466 C - USP36 Intron 0.21 TCGA-AZ-6601-01 17 76823391 76823391 C T USP36 Missense_Mutation p.A209T 0.10 deleterious(0) benign(0.22) TCGA-AZ-6601-01 17 76967906 76967906 G T LGALS3BP Missense_Mutation p.L504M 0.25 deleterious(0.02) benign(0.4) TCGA-AZ-6601-01 17 7750865 7750865 C A KDM6B Missense_Mutation p.P420H 0.21 unknown(0) TCGA-AZ-6601-01 17 7754392 7754392 G A KDM6B Missense_Mutation p.V1243M 0.24 probably_damaging(0.998) TCGA-AZ-6601-01 17 77709045 77709045 G A ENPP7 Silent p.T201T 0.22 TCGA-AZ-6601-01 17 78079646 78079646 G T GAA Missense_Mutation p.E215D 0.09 tolerated(0.45) benign(0.002) TCGA-AZ-6601-01 17 7808983 7808983 C A CHD3 Missense_Mutation p.P1454T 0.14 possibly_damaging(0.876) TCGA-AZ-6601-01 17 78090772 78090772 C A GAA Missense_Mutation p.P732H 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 17 7813746 7813746 T C CHD3 Missense_Mutation p.V1923A 0.24 benign(0.418) TCGA-AZ-6601-01 17 78320362 78320362 G A RNF213 Missense_Mutation p.A2743T 0.27 probably_damaging(1) TCGA-AZ-6601-01 17 78899240 78899240 G A RPTOR Missense_Mutation p.C960Y 0.22 tolerated(1) benign(0.311) TCGA-AZ-6601-01 17 7915485 7915485 C T GUCY2D Silent p.N591N 0.36 TCGA-AZ-6601-01 17 79171968 79171968 C T AZI1 Missense_Mutation p.V473M 0.27 tolerated(0.23) benign(0.007) TCGA-AZ-6601-01 17 79180596 79180596 G A AZI1 Missense_Mutation p.R155W 0.34 deleterious(0.01) benign(0.021) TCGA-AZ-6601-01 17 79426113 79426113 G A RP11-1055B8.7 Missense_Mutation p.R1880Q 0.26 benign(0.003) TCGA-AZ-6601-01 17 79612317 79612317 G - TSPAN10 Frame_Shift_Del p.L116Cfs*19 0.22 TCGA-AZ-6601-01 17 79667542 79667542 G T HGS Missense_Mutation p.G643V 0.24 tolerated(0.09) benign(0.182) TCGA-AZ-6601-01 17 7976221 7976221 C T ALOX12B Silent p.P658P 0.17 TCGA-AZ-6601-01 17 79912136 79912136 G A NOTUM Missense_Mutation p.R394W 0.19 deleterious(0) probably_damaging(0.952) TCGA-AZ-6601-01 17 80020813 80020813 G A DUS1L Missense_Mutation p.T145M 0.21 deleterious(0) possibly_damaging(0.883) TCGA-AZ-6601-01 17 80041471 80041471 C T FASN Missense_Mutation p.A1755T 0.25 deleterious(0.03) probably_damaging(0.967) TCGA-AZ-6601-01 17 80195524 80195524 A G SLC16A3 Missense_Mutation p.Y293C 0.17 deleterious(0) probably_damaging(0.928) TCGA-AZ-6601-01 17 80320598 80320598 C A TEX19 3'UTR 0.21 TCGA-AZ-6601-01 17 80321041 80321041 G A TEX19 3'UTR 0.17 TCGA-AZ-6601-01 17 80395080 80395080 C T HEXDC Missense_Mutation p.P247L 0.24 tolerated(0.31) benign(0.005) TCGA-AZ-6601-01 17 81052168 81052168 G A METRNL Missense_Mutation p.V262M 0.37 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 17 8133927 8133927 T C CTC1 Silent p.S904S 0.24 TCGA-AZ-6601-01 17 8706595 8706595 T C PIK3R6 Missense_Mutation p.Q753R 0.17 tolerated(0.05) probably_damaging(0.997) TCGA-AZ-6601-01 17 8791488 8791488 C T PIK3R5 Missense_Mutation p.R539Q 0.31 tolerated(0.21) probably_damaging(0.917) TCGA-AZ-6601-01 17 9503425 9503425 T C WDR16 Silent p.T226T 0.27 TCGA-AZ-6601-01 18 14179565 14179565 G A ANKRD20A5P RNA 0.26 TCGA-AZ-6601-01 18 21152067 21152067 G A NPC1 Silent p.N86N 0.19 TCGA-AZ-6601-01 18 21355757 21355757 C A LAMA3 Silent p.P425P 0.14 TCGA-AZ-6601-01 18 21447864 21447864 C T LAMA3 Nonsense_Mutation p.R1584* 0.18 TCGA-AZ-6601-01 18 24126702 24126702 G A KCTD1 Intron 0.22 TCGA-AZ-6601-01 18 25570123 25570123 G A CDH2 Silent p.A512A 0.26 TCGA-AZ-6601-01 18 25593647 25593647 C A CDH2 Missense_Mutation p.K133N 0.21 tolerated(0.37) benign(0.021) TCGA-AZ-6601-01 18 33059367 33059367 G A INO80C Silent p.G128G 0.11 TCGA-AZ-6601-01 18 34205617 34205617 G A FHOD3 Silent p.V367V 0.33 TCGA-AZ-6601-01 18 34297964 34297964 G A FHOD3 Silent p.A726A 0.25 TCGA-AZ-6601-01 18 43217106 43217106 T G SLC14A2 Missense_Mutation p.S268A 0.17 tolerated(0.27) benign(0.008) TCGA-AZ-6601-01 18 43685224 43685224 G A HAUS1 Missense_Mutation p.R32Q 0.10 tolerated(0.07) possibly_damaging(0.49) TCGA-AZ-6601-01 18 44139492 44139492 G T LOXHD1 5'Flank 0.21 TCGA-AZ-6601-01 18 44560965 44560965 C T TCEB3B Missense_Mutation p.S224N 0.18 tolerated(0.28) benign(0.043) TCGA-AZ-6601-01 18 46798598 46798598 A G DYM Silent p.L401L 0.28 TCGA-AZ-6601-01 18 47801397 47801397 G A MBD1 Missense_Mutation p.P310S 0.22 deleterious(0.05) benign(0.329) TCGA-AZ-6601-01 18 54694289 54694289 C T WDR7 Missense_Mutation p.R1442C 0.09 deleterious(0) probably_damaging(0.932) TCGA-AZ-6601-01 18 55020217 55020217 C T ST8SIA3 Missense_Mutation p.P47L 0.19 benign(0.002) TCGA-AZ-6601-01 18 55359124 55359124 C A ATP8B1 Missense_Mutation p.D379Y 0.23 tolerated(0.21) benign(0) TCGA-AZ-6601-01 18 56056329 56056329 G A NEDD4L Missense_Mutation p.G854S 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 18 61323023 61323023 G A SERPINB3 Silent p.T347T 0.27 TCGA-AZ-6601-01 18 66504105 66504105 C T CCDC102B Silent p.P35P 0.18 TCGA-AZ-6601-01 18 67614754 67614754 T A CD226 Intron 0.23 TCGA-AZ-6601-01 18 67992685 67992685 G A SOCS6 Missense_Mutation p.A261T 0.29 tolerated_low_confidence(0.43) benign(0) TCGA-AZ-6601-01 18 67995646 67995646 G A SOCS6 3'UTR 0.24 TCGA-AZ-6601-01 18 694283 694283 C T ENOSF1 Missense_Mutation p.A142T 0.12 deleterious(0) probably_damaging(0.987) TCGA-AZ-6601-01 18 7231316 7231316 G A LRRC30 Missense_Mutation p.M60I 0.19 tolerated(0.12) benign(0.009) TCGA-AZ-6601-01 18 7231782 7231782 G A LRRC30 Missense_Mutation p.A216T 0.19 tolerated(0.15) possibly_damaging(0.621) TCGA-AZ-6601-01 18 72343864 72343864 G A ZNF407 Missense_Mutation p.A297T 0.29 tolerated(0.08) benign(0) TCGA-AZ-6601-01 18 72344508 72344508 C A ZNF407 Silent p.S511S 0.22 TCGA-AZ-6601-01 18 72999453 72999453 C T TSHZ1 Silent p.A652A 0.26 TCGA-AZ-6601-01 18 73139517 73139517 A G SMIM21 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) benign(0.092) TCGA-AZ-6601-01 18 756837 756837 T C YES1 Splice_Site 0.25 TCGA-AZ-6601-01 18 77170866 77170866 C T NFATC1 Silent p.Y184Y 0.46 TCGA-AZ-6601-01 18 77624211 77624211 G A KCNG2 Missense_Mutation p.V182M 0.10 deleterious(0.04) possibly_damaging(0.484) TCGA-AZ-6601-01 18 8378358 8378358 C T PTPRM Silent p.D1186D 0.17 TCGA-AZ-6601-01 19 1004895 1004895 C T GRIN3B Silent p.N465N 0.31 TCGA-AZ-6601-01 19 1013275 1013275 C T TMEM259 Missense_Mutation p.S191N 0.16 tolerated(0.08) possibly_damaging(0.449) TCGA-AZ-6601-01 19 10221262 10221262 C T PPAN Missense_Mutation p.R335C 0.31 deleterious(0.04) probably_damaging(0.972) TCGA-AZ-6601-01 19 10578147 10578147 G A PDE4A Silent p.P837P 0.24 TCGA-AZ-6601-01 19 1059055 1059055 C T ABCA7 Missense_Mutation p.R1812C 0.30 deleterious(0) possibly_damaging(0.891) TCGA-AZ-6601-01 19 10602911 10602911 G T KEAP1 Missense_Mutation p.L223M 0.13 deleterious(0) possibly_damaging(0.458) TCGA-AZ-6601-01 19 10610751 10610751 A G KEAP1 5'UTR 0.24 TCGA-AZ-6601-01 19 1062172 1062172 G A ABCA7 Missense_Mutation p.V1858M 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-6601-01 19 1062249 1062249 G A ABCA7 Silent p.T1883T 0.24 TCGA-AZ-6601-01 19 1063666 1063666 G A ABCA7 Missense_Mutation p.V1946M 0.27 deleterious(0.03) benign(0.249) TCGA-AZ-6601-01 19 10791112 10791112 G A ILF3 Missense_Mutation p.S317N 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-6601-01 19 1080515 1080515 G A HMHA1 Silent p.S643S 0.22 TCGA-AZ-6601-01 19 1083225 1083225 C A HMHA1 Missense_Mutation p.P959H 0.11 deleterious(0.02) possibly_damaging(0.71) TCGA-AZ-6601-01 19 1108164 1108164 C T SBNO2 3'UTR 0.15 TCGA-AZ-6601-01 19 11141504 11141504 C T SMARCA4 Missense_Mutation p.L1161F 0.24 probably_damaging(1) TCGA-AZ-6601-01 19 11304461 11304461 C A KANK2 Missense_Mutation p.A99S 0.26 tolerated(0.82) probably_damaging(0.997) TCGA-AZ-6601-01 19 11417375 11417375 C A TSPAN16 Silent p.S182S 0.28 TCGA-AZ-6601-01 19 11453703 11453703 C T TMEM205 Missense_Mutation p.V120M 0.26 tolerated(0.11) benign(0.02) TCGA-AZ-6601-01 19 11687267 11687267 G A ACP5 Nonsense_Mutation p.R176* 0.24 TCGA-AZ-6601-01 19 11832715 11832715 T C ZNF823 Missense_Mutation p.H545R 0.19 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 19 12223966 12223966 G A ZNF788 Missense_Mutation p.R535H 0.21 deleterious(0.02) benign(0) TCGA-AZ-6601-01 19 12776171 12776171 C T MAN2B1 Missense_Mutation p.R144H 0.29 tolerated(0.22) benign(0.002) TCGA-AZ-6601-01 19 12822264 12822264 C A TNPO2 Missense_Mutation p.E321D 0.25 tolerated(0.2) benign(0.003) TCGA-AZ-6601-01 19 12883834 12883834 G A HOOK2 Missense_Mutation p.R77W 0.32 deleterious(0) possibly_damaging(0.67) TCGA-AZ-6601-01 19 1295691 1295691 C T EFNA2 Silent p.G96G 0.15 TCGA-AZ-6601-01 19 13394128 13394128 C T CACNA1A Missense_Mutation p.A1259T 0.16 probably_damaging(0.913) TCGA-AZ-6601-01 19 13445285 13445285 G A CACNA1A Missense_Mutation p.R369W 0.21 probably_damaging(0.942) TCGA-AZ-6601-01 19 13928637 13928637 G A ZSWIM4 Missense_Mutation p.G474R 0.21 deleterious(0.01) unknown(0) TCGA-AZ-6601-01 19 14074717 14074717 T C RFX1 Missense_Mutation p.N772D 0.19 deleterious(0) possibly_damaging(0.501) TCGA-AZ-6601-01 19 14501820 14501820 T C CD97 Missense_Mutation p.V92A 0.22 tolerated(0.47) benign(0.01) TCGA-AZ-6601-01 19 1482397 1482397 T C PCSK4 Missense_Mutation p.T592A 0.19 tolerated(0.24) benign(0.01) TCGA-AZ-6601-01 19 15839089 15839089 C T OR10H2 Missense_Mutation p.P79L 0.23 deleterious(0) probably_damaging(0.932) TCGA-AZ-6601-01 19 16038105 16038105 G A CYP4F11 Missense_Mutation p.R148C 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 19 16646425 16646425 C T CHERP Silent p.P74P 0.18 TCGA-AZ-6601-01 19 17326192 17326192 G T USE1 5'UTR 0.19 TCGA-AZ-6601-01 19 17387340 17387340 G A BABAM1 Silent p.V202V 0.24 TCGA-AZ-6601-01 19 17424898 17424898 G A DDA1 Missense_Mutation p.V24M 0.10 tolerated(0.22) benign(0.374) TCGA-AZ-6601-01 19 17425179 17425179 C T DDA1 Silent p.R39R 0.10 TCGA-AZ-6601-01 19 17688207 17688207 G A COLGALT1 Missense_Mutation p.R355Q 0.12 deleterious(0) probably_damaging(0.972) TCGA-AZ-6601-01 19 17691597 17691597 G A COLGALT1 Nonsense_Mutation p.W495* 0.18 TCGA-AZ-6601-01 19 17759248 17759248 C T UNC13A Missense_Mutation p.C603Y 0.32 deleterious(0) probably_damaging(0.949) TCGA-AZ-6601-01 19 17759265 17759265 G A UNC13A Silent p.D597D 0.23 TCGA-AZ-6601-01 19 17844206 17844206 C T MAP1S Missense_Mutation p.A998V 0.27 tolerated(0.07) probably_damaging(0.994) TCGA-AZ-6601-01 19 17945697 17945697 G A JAK3 Silent p.G721G 0.26 TCGA-AZ-6601-01 19 18119538 18119538 C T ARRDC2 Missense_Mutation p.T98M 0.13 tolerated(0.1) benign(0.393) TCGA-AZ-6601-01 19 18242832 18242832 G A MAST3 Missense_Mutation p.V487M 0.16 deleterious(0.01) probably_damaging(0.963) TCGA-AZ-6601-01 19 18343780 18343780 C T PDE4C Nonsense_Mutation p.W74* 0.19 TCGA-AZ-6601-01 19 18572450 18572450 G A ELL Nonsense_Mutation p.R228* 0.26 TCGA-AZ-6601-01 19 18649107 18649107 C T FKBP8 Missense_Mutation p.A231T 0.09 tolerated(0.29) benign(0.081) TCGA-AZ-6601-01 19 18778830 18778830 G A KLHL26 Missense_Mutation p.R208H 0.28 deleterious(0.01) probably_damaging(0.97) TCGA-AZ-6601-01 19 18887993 18887993 C - CRTC1 Frame_Shift_Del p.S588Afs*6 0.33 TCGA-AZ-6601-01 19 18895116 18895116 C T COMP Missense_Mutation p.G658R 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 19 18956815 18956815 C T UPF1 Silent p.N86N 0.31 TCGA-AZ-6601-01 19 19256482 19256482 C - MEF2B 3'Flank 0.09 TCGA-AZ-6601-01 19 19576179 19576179 C T GATAD2A Missense_Mutation p.R9W 0.09 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 19 19655267 19655267 G A CILP2 Missense_Mutation p.R638H 0.24 tolerated(0.05) probably_damaging(0.996) TCGA-AZ-6601-01 19 19737773 19737773 C T LPAR2 Silent p.R107R 0.16 TCGA-AZ-6601-01 19 2046283 2046283 C T MKNK2 Splice_Site p.X81_splice 0.33 TCGA-AZ-6601-01 19 2076910 2076910 G A MOB3A Missense_Mutation p.A175V 0.27 tolerated(1) benign(0.036) TCGA-AZ-6601-01 19 2078349 2078349 G A MOB3A Missense_Mutation p.R71C 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 19 21365534 21365534 A G ZNF431 Missense_Mutation p.Q143R 0.26 tolerated(0.07) probably_damaging(0.969) TCGA-AZ-6601-01 19 22256325 22256325 C A ZNF257 Missense_Mutation p.P62H 0.11 deleterious(0) possibly_damaging(0.824) TCGA-AZ-6601-01 19 2289900 2289900 G A LINGO3 3'UTR 0.28 TCGA-AZ-6601-01 19 2291353 2291353 C T LINGO3 Silent p.L141L 0.24 TCGA-AZ-6601-01 19 23926507 23926507 C A ZNF681 Missense_Mutation p.E615D 0.15 tolerated(0.06) benign(0.001) TCGA-AZ-6601-01 19 2425444 2425444 C T TMPRSS9 Missense_Mutation p.R991C 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 19 2763719 2763719 G A SGTA Silent p.G143G 0.25 TCGA-AZ-6601-01 19 2997799 2997799 A G TLE2 3'UTR 0.21 TCGA-AZ-6601-01 19 30018164 30018164 C T VSTM2B Silent p.D43D 0.14 TCGA-AZ-6601-01 19 30165116 30165116 A T PLEKHF1 Missense_Mutation p.S124C 0.16 tolerated(0.06) benign(0.035) TCGA-AZ-6601-01 19 30503317 30503317 G A URI1 Missense_Mutation p.R435Q 0.23 deleterious_low_confidence(0.03) benign(0.124) TCGA-AZ-6601-01 19 3148603 3148603 G A GNA15 Missense_Mutation p.G54R 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 19 31768903 31768903 G A TSHZ3 Missense_Mutation p.T599M 0.22 deleterious(0.04) possibly_damaging(0.487) TCGA-AZ-6601-01 19 3179783 3179783 G A S1PR4 Missense_Mutation p.M331I 0.29 tolerated(0.21) benign(0) TCGA-AZ-6601-01 19 33202775 33202775 G A NUDT19 Missense_Mutation p.R347H 0.24 tolerated(0.45) benign(0.014) TCGA-AZ-6601-01 19 33247088 33247088 G A TDRD12 Splice_Site p.X258_splice 0.21 TCGA-AZ-6601-01 19 33892662 33892662 C T PEPD Missense_Mutation p.R311Q 0.28 tolerated(0.22) benign(0.014) TCGA-AZ-6601-01 19 3496660 3496660 G A DOHH Silent p.S51S 0.23 TCGA-AZ-6601-01 19 3527652 3527652 G A FZR1 Missense_Mutation p.R165Q 0.19 tolerated(0.16) benign(0.221) TCGA-AZ-6601-01 19 35757828 35757828 G A LSR Missense_Mutation p.D416N 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-6601-01 19 35850346 35850346 G A FFAR3 Missense_Mutation p.R185Q 0.20 tolerated(0.1) probably_damaging(0.976) TCGA-AZ-6601-01 19 35850878 35850878 C T FFAR3 3'UTR 0.12 TCGA-AZ-6601-01 19 35941339 35941339 C A FFAR2 Silent p.S241S 0.27 TCGA-AZ-6601-01 19 36124047 36124047 G A RBM42 Missense_Mutation p.V193M 0.11 tolerated(0.09) probably_damaging(0.974) TCGA-AZ-6601-01 19 36317297 36317297 A G NPHS1 3'UTR 0.27 TCGA-AZ-6601-01 19 36431007 36431007 G A LRFN3 Missense_Mutation p.R227H 0.28 tolerated(0.09) possibly_damaging(0.828) TCGA-AZ-6601-01 19 36497693 36497693 G A SYNE4 Missense_Mutation p.R193W 0.23 tolerated(0.07) possibly_damaging(0.876) TCGA-AZ-6601-01 19 36506849 36506849 G T CLIP3 3'UTR 0.24 TCGA-AZ-6601-01 19 36594064 36594064 G T WDR62 Missense_Mutation p.A1157S 0.28 tolerated(1) benign(0.003) TCGA-AZ-6601-01 19 36604645 36604645 G T POLR2I 3'UTR 0.31 TCGA-AZ-6601-01 19 36884325 36884325 G A ZFP82 Missense_Mutation p.A306V 0.14 deleterious(0.01) benign(0.026) TCGA-AZ-6601-01 19 37211014 37211014 C T ZNF567 Missense_Mutation p.T432I 0.29 tolerated(0.16) probably_damaging(0.999) TCGA-AZ-6601-01 19 37368950 37368950 C A ZNF345 Silent p.S406S 0.22 TCGA-AZ-6601-01 19 3813830 3813830 A G ZFR2 Missense_Mutation p.S744P 0.26 tolerated(0.11) benign(0.142) TCGA-AZ-6601-01 19 38230053 38230053 C T ZNF573 Silent p.E446E 0.14 TCGA-AZ-6601-01 19 38780810 38780810 G A SPINT2 Missense_Mutation p.R148H 0.29 deleterious(0) probably_damaging(0.929) TCGA-AZ-6601-01 19 38904060 38904060 G A RASGRP4 Missense_Mutation p.R429W 0.20 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 19 39224961 39224961 C T CAPN12 Missense_Mutation p.G605R 0.21 deleterious(0) possibly_damaging(0.822) TCGA-AZ-6601-01 19 39408392 39408392 T C SARS2 Missense_Mutation p.I380V 0.17 deleterious(0.01) possibly_damaging(0.866) TCGA-AZ-6601-01 19 39760416 39760416 C T IFNL2 Silent p.G153G 0.25 TCGA-AZ-6601-01 19 3977912 3977912 C T EEF2 Missense_Mutation p.G658S 0.08 deleterious(0.03) probably_damaging(1) TCGA-AZ-6601-01 19 39879474 39879474 A G PAF1 Missense_Mutation p.F223S 0.08 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 19 39914100 39914100 C T PLEKHG2 Silent p.S802S 0.25 TCGA-AZ-6601-01 19 39960816 39960816 G A SUPT5H Missense_Mutation p.V478M 0.25 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 19 40098075 40098075 T C LGALS13 3'UTR 0.16 TCGA-AZ-6601-01 19 40367366 40367366 G T FCGBP Missense_Mutation p.R4532S 0.20 probably_damaging(0.972) TCGA-AZ-6601-01 19 40832280 40832280 G - C19orf47 Frame_Shift_Del p.R222Afs*74 0.19 TCGA-AZ-6601-01 19 4101261 4101261 C T MAP2K2 Silent p.A182A 0.24 TCGA-AZ-6601-01 19 41076619 41076619 G A SPTBN4 Missense_Mutation p.R2435H 0.11 deleterious(0) possibly_damaging(0.812) TCGA-AZ-6601-01 19 41111094 41111094 A G LTBP4 Missense_Mutation p.Y202C 0.22 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 19 41289736 41289736 A G RAB4B Missense_Mutation p.D89G 0.22 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 19 41627961 41627961 G A CYP2F1 Missense_Mutation p.V249I 0.27 tolerated(0.34) benign(0.003) TCGA-AZ-6601-01 19 41798173 41798173 G T HNRNPUL1 Silent p.V341V 0.26 TCGA-AZ-6601-01 19 42128106 42128106 C T CEACAM4 Missense_Mutation p.A154T 0.16 tolerated(0.3) possibly_damaging(0.468) TCGA-AZ-6601-01 19 4218068 4218068 G A ANKRD24 Missense_Mutation p.V971M 0.11 tolerated(0.08) possibly_damaging(0.811) TCGA-AZ-6601-01 19 42187990 42187990 C T CEACAM7 Silent p.E144E 0.30 TCGA-AZ-6601-01 19 42473598 42473598 C T ATP1A3 Missense_Mutation p.G906R 0.23 deleterious(0.03) probably_damaging(1) TCGA-AZ-6601-01 19 42729749 42729749 C A ZNF526 Missense_Mutation p.N398K 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-AZ-6601-01 19 42754531 42754531 C T ERF Missense_Mutation p.R70H 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 19 42793481 42793481 G A CIC Missense_Mutation p.R428H 0.20 probably_damaging(0.992) TCGA-AZ-6601-01 19 42795243 42795243 C - CIC Frame_Shift_Del p.P776Lfs*148 0.18 TCGA-AZ-6601-01 19 44047627 44047627 C T XRCC1 Missense_Mutation p.V607I 0.14 deleterious(0) benign(0.132) TCGA-AZ-6601-01 19 44103328 44103328 C T ZNF576 Missense_Mutation p.A144V 0.14 tolerated(0.57) possibly_damaging(0.492) TCGA-AZ-6601-01 19 44612163 44612163 G A ZNF224 Missense_Mutation p.R617H 0.23 deleterious(0) benign(0.397) TCGA-AZ-6601-01 19 44932929 44932929 C T ZNF229 Missense_Mutation p.R676Q 0.23 tolerated(0.1) benign(0.137) TCGA-AZ-6601-01 19 45208901 45208901 C A CEACAM16 Missense_Mutation p.R235S 0.27 tolerated(0.14) possibly_damaging(0.858) TCGA-AZ-6601-01 19 45211450 45211450 C A CEACAM16 Missense_Mutation p.Q420K 0.17 tolerated(0.14) possibly_damaging(0.815) TCGA-AZ-6601-01 19 4531812 4531812 G A PLIN5 Missense_Mutation p.A28V 0.08 deleterious(0) probably_damaging(0.967) TCGA-AZ-6601-01 19 45540944 45540944 G A RELB Missense_Mutation p.D546N 0.30 tolerated_low_confidence(0.06) benign(0.212) TCGA-AZ-6601-01 19 45567328 45567328 C T CLASRP Missense_Mutation p.R322C 0.30 deleterious(0.01) possibly_damaging(0.641) TCGA-AZ-6601-01 19 46094020 46094020 C A GPR4 3'UTR 0.09 TCGA-AZ-6601-01 19 46215284 46215284 C T FBXO46 Silent p.T490T 0.24 TCGA-AZ-6601-01 19 46289700 46289700 C T DMWD Missense_Mutation p.V352M 0.18 deleterious(0) probably_damaging(0.963) TCGA-AZ-6601-01 19 46394205 46394205 G A MYPOP Silent p.S292S 0.24 TCGA-AZ-6601-01 19 46812001 46812001 G A HIF3A Missense_Mutation p.R177H 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 19 46997646 46997646 C T PNMAL2 Silent p.S359S 0.26 TCGA-AZ-6601-01 19 47259949 47259949 C T FKRP Silent p.H414H 0.32 TCGA-AZ-6601-01 19 47823691 47823691 G A C5AR1 Silent p.T219T 0.19 TCGA-AZ-6601-01 19 4817516 4817516 C T TICAM1 Missense_Mutation p.A292T 0.15 tolerated(0.5) benign(0.001) TCGA-AZ-6601-01 19 4817694 4817694 G A TICAM1 Silent p.D232D 0.23 TCGA-AZ-6601-01 19 48182630 48182630 C T GLTSCR1 Missense_Mutation p.P68L 0.25 unknown(0) TCGA-AZ-6601-01 19 48220121 48220121 C T EHD2 Silent p.P84P 0.33 TCGA-AZ-6601-01 19 48634411 48634411 G A LIG1 Silent p.G581G 0.26 TCGA-AZ-6601-01 19 49001281 49001281 C T LMTK3 Silent p.T1044T 0.25 TCGA-AZ-6601-01 19 49206691 49206691 C A FUT2 Missense_Mutation p.L160I 0.20 tolerated(0.26) possibly_damaging(0.901) TCGA-AZ-6601-01 19 4929419 4929419 G A MIR4747 5'Flank 0.33 TCGA-AZ-6601-01 19 49472828 49472828 G A GYS1 Missense_Mutation p.P644L 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-AZ-6601-01 19 49671947 49671947 C A TRPM4 Silent p.R250R 0.16 TCGA-AZ-6601-01 19 49796640 49796640 C T SLC6A16 Splice_Site p.X540_splice 0.10 TCGA-AZ-6601-01 19 50097963 50097963 C T PRR12 Missense_Mutation p.T124M 0.29 possibly_damaging(0.897) TCGA-AZ-6601-01 19 50185259 50185259 C T PRMT1 Silent p.V95V 0.21 TCGA-AZ-6601-01 19 50251646 50251646 G A TSKS Silent p.H160H 0.29 TCGA-AZ-6601-01 19 504745 504745 C T MADCAM1 Missense_Mutation p.S310L 0.09 tolerated(0.5) benign(0.307) TCGA-AZ-6601-01 19 50881510 50881510 G A NR1H2 Missense_Mutation p.G96S 0.07 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 19 50939080 50939080 G A MYBPC2 Missense_Mutation p.V53I 0.27 tolerated(0.21) benign(0.002) TCGA-AZ-6601-01 19 51170594 51170594 C T SHANK1 Silent p.G1541G 0.33 TCGA-AZ-6601-01 19 5131483 5131483 C T KDM4B Missense_Mutation p.T571M 0.31 benign(0) TCGA-AZ-6601-01 19 51451971 51451971 G A KLK5 Silent p.C217C 0.26 TCGA-AZ-6601-01 19 51519353 51519353 C T KLK10 Missense_Mutation p.R110H 0.20 deleterious(0.03) possibly_damaging(0.892) TCGA-AZ-6601-01 19 51770757 51770757 G A SIGLECL1 Missense_Mutation p.A181T 0.23 tolerated(1) benign(0.001) TCGA-AZ-6601-01 19 51883762 51883762 C T LIM2 Missense_Mutation p.A195T 0.16 tolerated(0.06) probably_damaging(0.927) TCGA-AZ-6601-01 19 52149193 52149193 G A SIGLEC14 Missense_Mutation p.T181M 0.31 tolerated(0.48) benign(0.077) TCGA-AZ-6601-01 19 52497721 52497721 G A ZNF615 Missense_Mutation p.A214V 0.27 tolerated(0.36) benign(0.124) TCGA-AZ-6601-01 19 52658691 52658691 G A ZNF836 Missense_Mutation p.P749S 0.19 deleterious(0.01) probably_damaging(0.946) TCGA-AZ-6601-01 19 52716329 52716329 G A PPP2R1A Missense_Mutation p.R258H 0.08 deleterious(0.02) probably_damaging(0.97) TCGA-AZ-6601-01 19 52719843 52719843 T C PPP2R1A Missense_Mutation p.L352P 0.21 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 19 52918519 52918519 C T ZNF528 Silent p.P138P 0.25 TCGA-AZ-6601-01 19 53117525 53117525 C T ZNF83 Missense_Mutation p.R98H 0.29 tolerated(0.07) benign(0.118) TCGA-AZ-6601-01 19 53301744 53301744 G A ZNF28 3'UTR 0.25 TCGA-AZ-6601-01 19 53794525 53794525 C T BIRC8 5'UTR 0.12 TCGA-AZ-6601-01 19 53794573 53794573 G A BIRC8 5'UTR 0.24 TCGA-AZ-6601-01 19 53855808 53855808 G A ZNF845 Missense_Mutation p.R627Q 0.21 deleterious(0.03) probably_damaging(0.957) TCGA-AZ-6601-01 19 53885037 53885037 G A ZNF525 Missense_Mutation p.R402H 0.27 tolerated(0.22) benign(0.003) TCGA-AZ-6601-01 19 53913438 53913438 C T ZNF765 3'UTR 0.46 TCGA-AZ-6601-01 19 53959497 53959497 A G ZNF761 RNA 0.18 TCGA-AZ-6601-01 19 54483182 54483182 T G CACNG8 Silent p.G143G 0.22 TCGA-AZ-6601-01 19 54742838 54742838 G A LILRA6 Silent p.A479A 0.20 TCGA-AZ-6601-01 19 54968984 54968984 C T LENG8 Missense_Mutation p.A597V 0.25 tolerated(0.35) benign(0.041) TCGA-AZ-6601-01 19 55351111 55351111 C T KIR2DS4 Missense_Mutation p.T200M 0.15 tolerated_low_confidence(0.14) benign(0.368) TCGA-AZ-6601-01 19 55525786 55525786 C T GP6 Silent p.T509T 0.19 TCGA-AZ-6601-01 19 55568048 55568048 G A RDH13 Nonsense_Mutation p.R105* 0.28 TCGA-AZ-6601-01 19 55603809 55603809 C T PPP1R12C Splice_Site p.X685_splice 0.08 TCGA-AZ-6601-01 19 55697227 55697227 C T PTPRH Intron 0.21 TCGA-AZ-6601-01 19 56029122 56029122 C A SSC5D Missense_Mutation p.A1160D 0.22 unknown(0) TCGA-AZ-6601-01 19 56369395 56369395 C T NLRP4 Silent p.P212P 0.24 TCGA-AZ-6601-01 19 56482027 56482027 G A NLRP8 Silent p.A833A 0.22 TCGA-AZ-6601-01 19 57325072 57325072 C T PEG3 Missense_Mutation p.A1580T 0.14 tolerated(0.1) probably_damaging(0.999) TCGA-AZ-6601-01 19 57956661 57956661 G A ZNF749 Silent p.Q715Q 0.14 TCGA-AZ-6601-01 19 58084451 58084451 T C ZNF416 Missense_Mutation p.E274G 0.32 deleterious(0) possibly_damaging(0.887) TCGA-AZ-6601-01 19 581473 581473 C T BSG Silent p.R317R 0.25 TCGA-AZ-6601-01 19 5866539 5866539 G A FUT5 3'UTR 0.13 TCGA-AZ-6601-01 19 58946280 58946280 G A ZNF132 Silent p.D177D 0.26 TCGA-AZ-6601-01 19 58989057 58989057 G T ZNF446 Missense_Mutation p.E132D 0.17 tolerated(0.09) benign(0.067) TCGA-AZ-6601-01 19 621203 621203 G A POLRMT Missense_Mutation p.P832L 0.27 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-6601-01 19 6226996 6226996 C T MLLT1 Missense_Mutation p.G180S 0.11 tolerated(0.14) benign(0.153) TCGA-AZ-6601-01 19 625140 625140 C T POLRMT Missense_Mutation p.A313T 0.23 tolerated(0.56) benign(0.014) TCGA-AZ-6601-01 19 6751506 6751506 A G TRIP10 3'UTR 0.22 TCGA-AZ-6601-01 19 7504960 7504960 C T ARHGEF18 Missense_Mutation p.A45V 0.26 deleterious_low_confidence(0.04) benign(0.001) TCGA-AZ-6601-01 19 7546966 7546966 C T PEX11G Silent p.T127T 0.30 TCGA-AZ-6601-01 19 7595258 7595258 G A MCOLN1 Silent p.A482A 0.14 TCGA-AZ-6601-01 19 7673041 7673041 G A CAMSAP3 Silent p.A244A 0.40 TCGA-AZ-6601-01 19 7687685 7687685 C T XAB2 Missense_Mutation p.R445Q 0.25 deleterious(0) possibly_damaging(0.821) TCGA-AZ-6601-01 19 7706971 7706971 C T STXBP2 Silent p.N210N 0.36 TCGA-AZ-6601-01 19 7927363 7927363 G T EVI5L Missense_Mutation p.K630N 0.16 deleterious(0) benign(0.343) TCGA-AZ-6601-01 19 7975079 7975079 G A MAP2K7 Intron 0.26 TCGA-AZ-6601-01 19 808667 808667 C T PTBP1 Silent p.Y456Y 0.26 TCGA-AZ-6601-01 19 8130760 8130760 C - FBN3 3'UTR 0.16 TCGA-AZ-6601-01 19 8138039 8138039 G A FBN3 Silent p.A2615A 0.11 TCGA-AZ-6601-01 19 8159330 8159330 C T FBN3 Missense_Mutation p.D1969N 0.23 deleterious(0.02) probably_damaging(1) TCGA-AZ-6601-01 19 8661470 8661470 C A ADAMTS10 Splice_Site p.X347_splice 0.26 TCGA-AZ-6601-01 19 9089294 9089294 G A MUC16 Missense_Mutation p.P841S 0.20 unknown(0) TCGA-AZ-6601-01 19 9271868 9271868 C T ZNF317 Missense_Mutation p.T516M 0.23 tolerated(0.06) probably_damaging(0.985) TCGA-AZ-6601-01 19 9801569 9801569 G T ZNF812 Missense_Mutation p.H204N 0.22 tolerated(0.34) benign(0) TCGA-AZ-6601-01 19 994358 994358 G T WDR18 3'UTR 0.42 TCGA-AZ-6601-01 1 10327512 10327512 G A KIF1B Silent p.V168V 0.31 TCGA-AZ-6601-01 1 10364514 10364514 C T KIF1B Intron 0.32 TCGA-AZ-6601-01 1 10384048 10384048 G A KIF1B Missense_Mutation p.R776H 0.31 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 1 10460502 10460502 A G PGD Missense_Mutation p.E46G 0.08 deleterious(0.03) benign(0.22) TCGA-AZ-6601-01 1 10689654 10689654 G A PEX14 Silent p.P248P 0.14 TCGA-AZ-6601-01 1 10720550 10720550 G A CASZ1 Silent p.T183T 0.11 TCGA-AZ-6601-01 1 109010162 109010162 C T NBPF6 Missense_Mutation p.R584C 0.14 tolerated(0.13) benign(0) TCGA-AZ-6601-01 1 109010184 109010184 G A NBPF6 Missense_Mutation p.R591H 0.13 tolerated(1) benign(0) TCGA-AZ-6601-01 1 109373213 109373213 C T AKNAD1 Silent p.P602P 0.18 TCGA-AZ-6601-01 1 109637228 109637228 C T TMEM167B 3'UTR 0.30 TCGA-AZ-6601-01 1 109810583 109810583 C T CELSR2 Silent p.D2073D 0.25 TCGA-AZ-6601-01 1 109813153 109813153 C T CELSR2 Missense_Mutation p.R2472C 0.23 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 1 109955694 109955694 G A PSMA5 Missense_Mutation p.T96I 0.16 deleterious(0) possibly_damaging(0.59) TCGA-AZ-6601-01 1 110087021 110087021 G T GPR61 3'UTR 0.20 TCGA-AZ-6601-01 1 110172893 110172893 C T AMPD2 Silent p.I728I 0.34 TCGA-AZ-6601-01 1 110280114 110280114 A G GSTM3 Missense_Mutation p.F182L 0.17 tolerated(0.05) possibly_damaging(0.515) TCGA-AZ-6601-01 1 110561730 110561730 G A AHCYL1 Missense_Mutation p.A459T 0.20 tolerated(0.31) possibly_damaging(0.465) TCGA-AZ-6601-01 1 110563442 110563442 A - AHCYL1 Frame_Shift_Del p.N520Mfs*27 0.15 TCGA-AZ-6601-01 1 110775554 110775554 C T KCNC4 3'UTR 0.18 TCGA-AZ-6601-01 1 11186770 11186770 G A MTOR Silent p.D2145D 0.07 TCGA-AZ-6601-01 1 11187832 11187832 A G MTOR Missense_Mutation p.L2022P 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 11227551 11227551 G A MTOR Missense_Mutation p.P1426L 0.21 deleterious(0.03) benign(0.07) TCGA-AZ-6601-01 1 113235478 113235478 G A MOV10 Missense_Mutation p.R356Q 0.38 deleterious(0.03) benign(0.048) TCGA-AZ-6601-01 1 113244104 113244104 G A RHOC 3'UTR 0.23 TCGA-AZ-6601-01 1 11333585 11333585 T G UBIAD1 5'UTR 0.18 TCGA-AZ-6601-01 1 114191909 114191909 T C MAGI3 Missense_Mutation p.F736L 0.11 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 1 114354414 114354414 G A RSBN1 Silent p.C207C 0.28 TCGA-AZ-6601-01 1 114357443 114357443 A C PTPN22 3'UTR 0.30 TCGA-AZ-6601-01 1 114362165 114362165 T - PTPN22 Intron 0.12 TCGA-AZ-6601-01 1 114680497 114680497 C T SYT6 Missense_Mutation p.G146R 0.25 deleterious(0.01) probably_damaging(1) TCGA-AZ-6601-01 1 116194079 116194079 T C VANGL1 Silent p.S15S 0.11 TCGA-AZ-6601-01 1 116228071 116228071 C T VANGL1 Missense_Mutation p.R413W 0.26 deleterious(0) probably_damaging(0.986) TCGA-AZ-6601-01 1 117156795 117156795 T G IGSF3 Missense_Mutation p.I142L 0.24 tolerated(0.09) possibly_damaging(0.723) TCGA-AZ-6601-01 1 11731448 11731448 G A FBXO6 Missense_Mutation p.E138K 0.24 tolerated(0.29) benign(0.139) TCGA-AZ-6601-01 1 117487603 117487603 G A PTGFRN Missense_Mutation p.D241N 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 118170484 118170487 GTGC - FAM46C 3'UTR 0.08 TCGA-AZ-6601-01 1 118616530 118616530 T C SPAG17 Missense_Mutation p.S778G 0.21 tolerated(0.35) benign(0.442) TCGA-AZ-6601-01 1 11898452 11898452 G A CLCN6 Missense_Mutation p.D786N 0.17 tolerated(0.39) benign(0.259) TCGA-AZ-6601-01 1 119466202 119466202 A G TBX15 Missense_Mutation p.Y134H 0.21 deleterious(0) probably_damaging(0.973) TCGA-AZ-6601-01 1 120166548 120166548 C T ZNF697 Missense_Mutation p.V140I 0.19 tolerated(0.23) benign(0.001) TCGA-AZ-6601-01 1 120468345 120468345 C T NOTCH2 Missense_Mutation p.R1365H 0.27 tolerated(0.18) benign(0.008) TCGA-AZ-6601-01 1 12186080 12186080 G A TNFRSF8 Missense_Mutation p.R409Q 0.28 tolerated(0.36) benign(0.047) TCGA-AZ-6601-01 1 1229825 1229825 G A ACAP3 Missense_Mutation p.A699V 0.32 tolerated(0.33) benign(0.003) TCGA-AZ-6601-01 1 1233481 1233481 C T ACAP3 Missense_Mutation p.V310M 0.22 deleterious(0) possibly_damaging(0.887) TCGA-AZ-6601-01 1 1255896 1255896 T C CPSF3L Missense_Mutation p.D53G 0.17 deleterious(0) probably_damaging(0.969) TCGA-AZ-6601-01 1 1258491 1258491 C T CPSF3L 5'UTR 0.26 TCGA-AZ-6601-01 1 12819314 12819314 C T C1orf158 Silent p.D99D 0.22 TCGA-AZ-6601-01 1 12820995 12820995 G A C1orf158 3'UTR 0.25 TCGA-AZ-6601-01 1 12854616 12854616 C T PRAMEF1 Silent p.F280F 0.16 TCGA-AZ-6601-01 1 1322937 1322937 C T CCNL2 Missense_Mutation p.G413S 0.08 tolerated(0.96) benign(0.019) TCGA-AZ-6601-01 1 1328055 1328055 G A CCNL2 Intron 0.36 TCGA-AZ-6601-01 1 1375570 1375570 G A VWA1 3'UTR 0.27 TCGA-AZ-6601-01 1 14104962 14104962 G A PRDM2 Silent p.P224P 0.11 TCGA-AZ-6601-01 1 14109232 14109232 C T PRDM2 Missense_Mutation p.P1648S 0.15 unknown(0) TCGA-AZ-6601-01 1 14149769 14149769 C T PRDM2 3'UTR 0.12 TCGA-AZ-6601-01 1 144877258 144877258 G T PDE4DIP Missense_Mutation p.L1477M 0.10 deleterious(0) probably_damaging(0.99) TCGA-AZ-6601-01 1 145415756 145415756 C A HFE2 Missense_Mutation p.P192H 0.11 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 145534935 145534935 G A ITGA10 Missense_Mutation p.R613Q 0.36 tolerated(0.36) benign(0.228) TCGA-AZ-6601-01 1 145539050 145539050 G A ITGA10 Missense_Mutation p.G997E 0.29 tolerated(0.21) possibly_damaging(0.768) TCGA-AZ-6601-01 1 145585597 145585597 G A PIAS3 Missense_Mutation p.R621Q 0.28 tolerated_low_confidence(0.06) benign(0.397) TCGA-AZ-6601-01 1 147091129 147091129 C T BCL9 Nonsense_Mutation p.Q390* 0.25 TCGA-AZ-6601-01 1 150471113 150471113 C T TARS2 Silent p.D458D 0.20 TCGA-AZ-6601-01 1 151156867 151156867 C T VPS72 Missense_Mutation p.C163Y 0.24 tolerated(1) benign(0) TCGA-AZ-6601-01 1 151260469 151260469 C T ZNF687 Missense_Mutation p.R568C 0.27 deleterious(0) possibly_damaging(0.899) TCGA-AZ-6601-01 1 151679639 151679639 C T CELF3 Missense_Mutation p.G302R 0.23 deleterious(0) benign(0.062) TCGA-AZ-6601-01 1 151780029 151780029 G A RORC Silent p.I492I 0.22 TCGA-AZ-6601-01 1 152080698 152080698 G A TCHH Silent p.R1665R 0.27 TCGA-AZ-6601-01 1 152192398 152192398 T G HRNR Silent p.S569S 0.20 TCGA-AZ-6601-01 1 152192431 152192431 A G HRNR Silent p.Y558Y 0.24 TCGA-AZ-6601-01 1 152192960 152192960 C A HRNR Missense_Mutation p.G382V 0.23 unknown(0) TCGA-AZ-6601-01 1 152382233 152382233 C A CRNN Missense_Mutation p.W442L 0.26 deleterious(0) probably_damaging(0.985) TCGA-AZ-6601-01 1 152573450 152573450 C T LCE3C Silent p.G81G 0.38 TCGA-AZ-6601-01 1 153633896 153633896 G A SNAPIN 3'UTR 0.16 TCGA-AZ-6601-01 1 153790643 153790643 G T GATAD2B Missense_Mutation p.P201Q 0.18 deleterious(0.02) benign(0.03) TCGA-AZ-6601-01 1 15392319 15392319 C T KAZN Intron 0.31 TCGA-AZ-6601-01 1 153923858 153923858 G A CRTC2 Missense_Mutation p.R428C 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-AZ-6601-01 1 153941631 153941631 G T CREB3L4 Missense_Mutation p.G134C 0.24 deleterious(0) probably_damaging(0.978) TCGA-AZ-6601-01 1 154987685 154987685 G T ZBTB7B Missense_Mutation p.Q217H 0.24 tolerated(0.39) benign(0.146) TCGA-AZ-6601-01 1 155005669 155005669 G A DCST2 Missense_Mutation p.R114C 0.22 deleterious(0) possibly_damaging(0.794) TCGA-AZ-6601-01 1 155156455 155156455 G A TRIM46 Missense_Mutation p.R690H 0.25 deleterious(0.04) probably_damaging(0.948) TCGA-AZ-6601-01 1 155172877 155172877 C T THBS3 Missense_Mutation p.G270S 0.22 deleterious(0.02) probably_damaging(0.99) TCGA-AZ-6601-01 1 155207160 155207160 C T GBA Missense_Mutation p.R324H 0.22 deleterious(0) probably_damaging(0.977) TCGA-AZ-6601-01 1 155270719 155270719 G A PKLR Intron 0.24 TCGA-AZ-6601-01 1 156212946 156212946 C T BGLAP Missense_Mutation p.P99L 0.21 tolerated(0.36) benign(0.029) TCGA-AZ-6601-01 1 156216024 156216024 G A PAQR6 5'UTR 0.09 TCGA-AZ-6601-01 1 156219585 156219585 G A SMG5 3'UTR 0.23 TCGA-AZ-6601-01 1 156347155 156347155 G A RHBG Missense_Mutation p.R84H 0.17 deleterious(0) probably_damaging(0.984) TCGA-AZ-6601-01 1 156639666 156639666 C - NES Frame_Shift_Del p.P1439Qfs*11 0.21 TCGA-AZ-6601-01 1 156702141 156702141 G A RRNAD1 Missense_Mutation p.R102Q 0.16 deleterious(0) probably_damaging(0.988) TCGA-AZ-6601-01 1 156814927 156814927 G A INSRR Missense_Mutation p.A793V 0.26 tolerated(0.26) possibly_damaging(0.794) TCGA-AZ-6601-01 1 156845339 156845339 G T NTRK1 Missense_Mutation p.G461V 0.26 deleterious(0) benign(0.023) TCGA-AZ-6601-01 1 156950258 156950258 C T ARHGEF11 Missense_Mutation p.G82S 0.22 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 1 157095503 157095503 C T ETV3 Silent p.Q223Q 0.18 TCGA-AZ-6601-01 1 15863136 15863136 G A DNAJC16 Missense_Mutation p.R134Q 0.19 tolerated(0.18) benign(0.006) TCGA-AZ-6601-01 1 158943466 158943466 A G PYHIN1 Silent p.S463S 0.29 TCGA-AZ-6601-01 1 159038390 159038390 G A AIM2 Missense_Mutation p.R122C 0.22 tolerated(0.08) benign(0.001) TCGA-AZ-6601-01 1 160261181 160261181 C T COPA Missense_Mutation p.A1131T 0.08 deleterious(0.02) possibly_damaging(0.534) TCGA-AZ-6601-01 1 160341707 160341707 C T NHLH1 3'UTR 0.30 TCGA-AZ-6601-01 1 16199455 16199455 G A SPEN Silent p.T76T 0.22 TCGA-AZ-6601-01 1 16375684 16375684 C T CLCNKB Missense_Mutation p.A242V 0.23 deleterious(0) probably_damaging(0.916) TCGA-AZ-6601-01 1 16380144 16380144 G A CLCNKB Missense_Mutation p.V545M 0.27 deleterious(0.01) benign(0.113) TCGA-AZ-6601-01 1 16532070 16532070 G A ARHGEF19 Missense_Mutation p.P515L 0.24 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 1 1669797 1669797 C T SLC35E2 Silent p.T183T 0.19 TCGA-AZ-6601-01 1 168066365 168066365 C T GPR161 Silent p.L180L 0.20 TCGA-AZ-6601-01 1 16945566 16945566 C T RP5-1182A14.5 3'Flank 0.06 TCGA-AZ-6601-01 1 170508546 170508546 C T GORAB Missense_Mutation p.P111L 0.28 deleterious(0.03) benign(0.034) TCGA-AZ-6601-01 1 17081961 17081961 G A MST1L RNA 0.17 TCGA-AZ-6601-01 1 170994553 170994553 T - MROH9 Frame_Shift_Del p.L759* 0.21 TCGA-AZ-6601-01 1 17257042 17257042 C T CROCC Missense_Mutation p.R268C 0.29 benign(0.104) TCGA-AZ-6601-01 1 17281850 17281850 G A CROCC Missense_Mutation p.R1170H 0.28 probably_damaging(0.992) TCGA-AZ-6601-01 1 17296818 17296818 G T CROCC Missense_Mutation p.R1841L 0.16 benign(0.433) TCGA-AZ-6601-01 1 17296920 17296920 G A CROCC Missense_Mutation p.R1875H 0.25 possibly_damaging(0.715) TCGA-AZ-6601-01 1 174983905 174983905 C T MRPS14 Missense_Mutation p.R96H 0.10 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 1 17727969 17727969 G A PADI6 RNA 0.29 TCGA-AZ-6601-01 1 178514842 178514842 C T C1ORF220 Silent p.S76S 0.15 TCGA-AZ-6601-01 1 179887122 179887122 C T TOR1AIP1 Silent p.N500N 0.23 TCGA-AZ-6601-01 1 180151398 180151398 C T QSOX1 Silent p.T232T 0.29 TCGA-AZ-6601-01 1 180243511 180243511 G A LHX4 Missense_Mutation p.A324T 0.25 tolerated(0.53) benign(0) TCGA-AZ-6601-01 1 181732633 181732633 G A CACNA1E Missense_Mutation p.R1594H 0.15 deleterious(0) possibly_damaging(0.812) TCGA-AZ-6601-01 1 182642037 182642037 G A RGS8 5'UTR 0.20 TCGA-AZ-6601-01 1 182835613 182835613 G A DHX9 Missense_Mutation p.R456Q 0.18 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 182847263 182847263 G A DHX9 Missense_Mutation p.R769Q 0.26 deleterious(0.03) probably_damaging(1) TCGA-AZ-6601-01 1 185972915 185972915 G A HMCN1 Missense_Mutation p.A1472T 0.32 benign(0.004) TCGA-AZ-6601-01 1 186082004 186082004 C A HMCN1 Missense_Mutation p.L3684I 0.30 benign(0.383) TCGA-AZ-6601-01 1 186645278 186645278 G A PTGS2 Missense_Mutation p.H337Y 0.20 deleterious(0) benign(0.233) TCGA-AZ-6601-01 1 19181198 19181198 G A TAS1R2 Missense_Mutation p.R256C 0.23 deleterious(0) probably_damaging(0.969) TCGA-AZ-6601-01 1 19212050 19212050 G A ALDH4A1 Missense_Mutation p.R124W 0.23 deleterious(0) probably_damaging(0.988) TCGA-AZ-6601-01 1 192153599 192153599 G T RGS18 Missense_Mutation p.R208I 0.27 tolerated(0.23) benign(0.367) TCGA-AZ-6601-01 1 19236933 19236933 G A IFFO2 Nonsense_Mutation p.R451* 0.21 TCGA-AZ-6601-01 1 19414331 19414331 G A UBR4 Silent p.C4841C 0.28 TCGA-AZ-6601-01 1 19484413 19484413 G A UBR4 Missense_Mutation p.R1886W 0.21 probably_damaging(0.999) TCGA-AZ-6601-01 1 1961713 1961713 G A GABRD Missense_Mutation p.A451T 0.27 tolerated(1) benign(0.002) TCGA-AZ-6601-01 1 196695761 196695761 A C CFH Missense_Mutation p.T679P 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-6601-01 1 198676067 198676067 T C PTPRC Missense_Mutation p.L297S 0.14 deleterious(0.01) probably_damaging(0.964) TCGA-AZ-6601-01 1 20067316 20067316 G A TMCO4 Silent p.L332L 0.26 TCGA-AZ-6601-01 1 201196296 201196296 G A IGFN1 Silent p.T3691T 0.30 TCGA-AZ-6601-01 1 202121702 202121702 G A PTPN7 Silent p.A386A 0.22 TCGA-AZ-6601-01 1 202718233 202718233 C T KDM5B Missense_Mutation p.R619H 0.31 deleterious(0) probably_damaging(0.957) TCGA-AZ-6601-01 1 203015038 203015038 C T PPFIA4 Missense_Mutation p.R17C 0.15 deleterious(0) probably_damaging(0.987) TCGA-AZ-6601-01 1 203024691 203024691 C T PPFIA4 Missense_Mutation p.T148M 0.21 deleterious(0.02) probably_damaging(0.95) TCGA-AZ-6601-01 1 203098227 203098227 G A ADORA1 Silent p.P86P 0.26 TCGA-AZ-6601-01 1 203148424 203148424 G C CHI3L1 3'UTR 0.20 TCGA-AZ-6601-01 1 203148686 203148686 C T CHI3L1 Missense_Mutation p.A347T 0.32 deleterious(0) probably_damaging(0.974) TCGA-AZ-6601-01 1 203678630 203678630 C T ATP2B4 Missense_Mutation p.R587C 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-AZ-6601-01 1 204412578 204412578 C T PIK3C2B Silent p.Q1005Q 0.18 TCGA-AZ-6601-01 1 204429749 204429749 G A PIK3C2B Missense_Mutation p.R451C 0.27 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-6601-01 1 205129287 205129287 T C DSTYK Missense_Mutation p.D687G 0.18 deleterious(0.01) possibly_damaging(0.87) TCGA-AZ-6601-01 1 205388380 205388380 C T LEMD1 Silent p.A61A 0.23 TCGA-AZ-6601-01 1 206224652 206224652 T G AVPR1B Missense_Mutation p.L71R 0.10 deleterious(0.01) probably_damaging(0.972) TCGA-AZ-6601-01 1 206634975 206634975 C T SRGAP2 3'UTR 0.25 TCGA-AZ-6601-01 1 206772406 206772406 C T EIF2D Missense_Mutation p.V415I 0.23 tolerated(1) benign(0) TCGA-AZ-6601-01 1 206775738 206775738 A G EIF2D Missense_Mutation p.L285P 0.18 deleterious(0) probably_damaging(0.929) TCGA-AZ-6601-01 1 207134311 207134311 C T FCAMR Missense_Mutation p.A304T 0.26 tolerated(0.14) benign(0.205) TCGA-AZ-6601-01 1 207235985 207235985 C T PFKFB2 Missense_Mutation p.R78W 0.23 probably_damaging(1) TCGA-AZ-6601-01 1 207669653 207669653 C T CR1 Missense_Mutation p.P14L 0.15 deleterious_low_confidence(0) benign(0.389) TCGA-AZ-6601-01 1 208315770 208315770 G A PLXNA2 Silent p.Y470Y 0.15 TCGA-AZ-6601-01 1 20879731 20879731 G A FAM43B Missense_Mutation p.G89S 0.32 deleterious(0.02) probably_damaging(0.97) TCGA-AZ-6601-01 1 212149965 212149965 C A INTS7 Nonsense_Mutation p.G523* 0.31 TCGA-AZ-6601-01 1 212193475 212193475 G A INTS7 Silent p.A120A 0.26 TCGA-AZ-6601-01 1 215256711 215256711 T C KCNK2 5'UTR 0.09 TCGA-AZ-6601-01 1 216497020 216497020 C T USH2A Missense_Mutation p.R449H 0.23 benign(0.021) TCGA-AZ-6601-01 1 220383753 220383753 G A RAB3GAP2 Nonsense_Mutation p.R197* 0.24 TCGA-AZ-6601-01 1 22109439 22109439 C T USP48 Silent p.R4R 0.13 TCGA-AZ-6601-01 1 22156551 22156551 C T HSPG2 Missense_Mutation p.R3902Q 0.35 probably_damaging(0.98) TCGA-AZ-6601-01 1 22174452 22174452 G A HSPG2 Silent p.H2624H 0.25 TCGA-AZ-6601-01 1 22179287 22179287 C G HSPG2 Silent p.P2210P 0.24 TCGA-AZ-6601-01 1 223567909 223567909 G A C1orf65 Silent p.A364A 0.27 TCGA-AZ-6601-01 1 226076546 226076546 C T LEFTY1 Missense_Mutation p.R74H 0.22 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 227279635 227279635 T - CDC42BPA Frame_Shift_Del p.V770Cfs*3 0.21 TCGA-AZ-6601-01 1 227922871 227922871 T C JMJD4 Missense_Mutation p.E81G 0.12 tolerated(0.15) benign(0.028) TCGA-AZ-6601-01 1 228112027 228112027 C T WNT9A Missense_Mutation p.A143T 0.18 tolerated(0.11) possibly_damaging(0.868) TCGA-AZ-6601-01 1 228399511 228399511 G A OBSCN Silent p.A9A 0.23 TCGA-AZ-6601-01 1 228474602 228474602 C T OBSCN Missense_Mutation p.R3565W 0.21 benign(0.241) TCGA-AZ-6601-01 1 228509288 228509288 C T OBSCN Missense_Mutation p.R5873W 0.23 probably_damaging(0.992) TCGA-AZ-6601-01 1 228547643 228547643 G A OBSCN Intron 0.29 TCGA-AZ-6601-01 1 228595801 228595801 C T TRIM17 3'UTR 0.26 TCGA-AZ-6601-01 1 22903330 22903330 C T EPHA8 Silent p.C260C 0.26 TCGA-AZ-6601-01 1 231298859 231298859 G A TRIM67 Silent p.P48P 0.20 TCGA-AZ-6601-01 1 235506609 235506609 G A GGPS1 3'UTR 0.16 TCGA-AZ-6601-01 1 236718916 236718916 T C HEATR1 Missense_Mutation p.I1897V 0.30 tolerated(0.08) benign(0.118) TCGA-AZ-6601-01 1 236723047 236723047 C T HEATR1 Silent p.A1579A 0.15 TCGA-AZ-6601-01 1 236740215 236740215 G A HEATR1 Silent p.P930P 0.15 TCGA-AZ-6601-01 1 236759133 236759133 T C HEATR1 Missense_Mutation p.K319R 0.15 tolerated(0.34) possibly_damaging(0.524) TCGA-AZ-6601-01 1 23689469 23689469 G A ZNF436 Missense_Mutation p.R136C 0.26 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 1 23696870 23696870 G A C1orf213 3'UTR 0.18 TCGA-AZ-6601-01 1 23697064 23697064 G A C1orf213 3'UTR 0.28 TCGA-AZ-6601-01 1 237550619 237550619 C T RYR2 Silent p.A205A 0.22 TCGA-AZ-6601-01 1 240656691 240656691 C T GREM2 Missense_Mutation p.A29T 0.24 tolerated(0.15) possibly_damaging(0.604) TCGA-AZ-6601-01 1 242511469 242511469 C T PLD5 Missense_Mutation p.V89M 0.23 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 1 244219481 244219481 T C ZBTB18 3'UTR 0.25 TCGA-AZ-6601-01 1 244220744 244220744 G A ZBTB18 3'UTR 0.21 TCGA-AZ-6601-01 1 245849844 245849844 G A KIF26B Missense_Mutation p.E1187K 0.30 deleterious(0) unknown(0) TCGA-AZ-6601-01 1 245912724 245912724 G A SMYD3 3'Flank 0.26 TCGA-AZ-6601-01 1 246711910 246711910 C A TFB2M Splice_Site p.X266_splice 0.20 TCGA-AZ-6601-01 1 24673118 24673118 C T GRHL3 Silent p.G510G 0.32 TCGA-AZ-6601-01 1 246810837 246810837 C T CNST Missense_Mutation p.A445V 0.26 tolerated(0.37) benign(0.005) TCGA-AZ-6601-01 1 247654840 247654840 C T OR2W5 RNA 0.10 TCGA-AZ-6601-01 1 247695615 247695615 G T OR2C3 Missense_Mutation p.L67I 0.09 deleterious(0) possibly_damaging(0.802) TCGA-AZ-6601-01 1 247836334 247836334 T C OR13G1 Missense_Mutation p.S4G 0.22 deleterious(0) benign(0.257) TCGA-AZ-6601-01 1 248039742 248039742 C A TRIM58 Missense_Mutation p.S471Y 0.23 tolerated_low_confidence(0.14) benign(0.021) TCGA-AZ-6601-01 1 248058891 248058891 G T OR2W3 Translation_Start_Site p.M1? 0.14 deleterious(0) benign(0.104) TCGA-AZ-6601-01 1 248309365 248309365 G A OR2M5 Missense_Mutation p.G306R 0.19 tolerated(0.25) benign(0.018) TCGA-AZ-6601-01 1 26156238 26156238 C T MTFR1L Silent p.C230C 0.32 TCGA-AZ-6601-01 1 26504001 26504001 G A CNKSR1 5'UTR 0.21 TCGA-AZ-6601-01 1 26509852 26509852 C T CNKSR1 Nonsense_Mutation p.R234* 0.23 TCGA-AZ-6601-01 1 26898055 26898055 G A RPS6KA1 Missense_Mutation p.G578E 0.27 tolerated(0.06) benign(0.243) TCGA-AZ-6601-01 1 27087961 27087961 C T ARID1A Nonsense_Mutation p.R750* 0.37 TCGA-AZ-6601-01 1 27277208 27277208 G A C1orf172 Missense_Mutation p.A360V 0.19 tolerated(1) benign(0.006) TCGA-AZ-6601-01 1 27278716 27278716 G A C1orf172 Silent p.H52H 0.25 TCGA-AZ-6601-01 1 27332527 27332527 C T FAM46B Missense_Mutation p.D396N 0.24 tolerated(0.31) benign(0.217) TCGA-AZ-6601-01 1 27627856 27627856 G A WDTC1 Missense_Mutation p.D457N 0.23 tolerated(0.58) benign(0.012) TCGA-AZ-6601-01 1 27676739 27676739 C T SYTL1 Intron 0.12 TCGA-AZ-6601-01 1 27685908 27685908 C A MAP3K6 Nonsense_Mutation p.G809* 0.22 TCGA-AZ-6601-01 1 27877070 27877070 C T AHDC1 Silent p.P519P 0.30 TCGA-AZ-6601-01 1 29064014 29064014 G A YTHDF2 Intron 0.24 TCGA-AZ-6601-01 1 29069519 29069519 C A YTHDF2 Missense_Mutation p.P246H 0.21 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 29070059 29070059 C T YTHDF2 Missense_Mutation p.S426F 0.09 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 29651744 29651744 C T PTPRU Missense_Mutation p.T1395M 0.19 tolerated(0.2) benign(0.02) TCGA-AZ-6601-01 1 32842297 32842297 A G BSDC1 Missense_Mutation p.V258A 0.19 tolerated(0.59) benign(0.001) TCGA-AZ-6601-01 1 33796986 33796986 G A PHC2 Missense_Mutation p.R656C 0.29 deleterious(0.02) probably_damaging(0.943) TCGA-AZ-6601-01 1 3395096 3395096 C T ARHGEF16 Silent p.S578S 0.27 TCGA-AZ-6601-01 1 33998775 33998775 T C CSMD2 Missense_Mutation p.D3205G 0.11 tolerated(0.34) possibly_damaging(0.845) TCGA-AZ-6601-01 1 35370435 35370435 A G DLGAP3 Missense_Mutation p.S184P 0.15 deleterious(0) probably_damaging(0.969) TCGA-AZ-6601-01 1 35484960 35484960 C T ZMYM6 Missense_Mutation p.C141Y 0.21 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 36786270 36786270 C T SH3D21 Missense_Mutation p.T669M 0.23 deleterious(0.04) benign(0.21) TCGA-AZ-6601-01 1 3703829 3703829 G A LRRC47 Missense_Mutation p.L221F 0.25 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 1 38323355 38323355 G A MTF1 5'UTR 0.25 TCGA-AZ-6601-01 1 39340814 39340814 T A GJA9 Missense_Mutation p.K319N 0.20 tolerated(0.54) benign(0.425) TCGA-AZ-6601-01 1 40148166 40148166 G A HPCAL4 3'UTR 0.24 TCGA-AZ-6601-01 1 40225998 40225998 G A BMP8B 3'UTR 0.16 TCGA-AZ-6601-01 1 41296806 41296806 G A KCNQ4 Missense_Mutation p.R448Q 0.22 tolerated(1) benign(0.001) TCGA-AZ-6601-01 1 42880159 42880159 C T RIMKLA Silent p.G230G 0.24 TCGA-AZ-6601-01 1 43395437 43395437 G A SLC2A1 Missense_Mutation p.R232C 0.15 deleterious(0) probably_damaging(0.991) TCGA-AZ-6601-01 1 43779005 43779005 C T TIE1 Silent p.N709N 0.22 TCGA-AZ-6601-01 1 43779084 43779084 A G TIE1 Missense_Mutation p.T736A 0.21 deleterious(0.04) probably_damaging(0.986) TCGA-AZ-6601-01 1 43787141 43787141 C T TIE1 Missense_Mutation p.P1075S 0.18 deleterious(0) probably_damaging(0.985) TCGA-AZ-6601-01 1 43788360 43788360 C T TIE1 Silent p.Y1128Y 0.21 TCGA-AZ-6601-01 1 43896662 43896662 G A SZT2 Missense_Mutation p.R1549Q 0.33 tolerated(0.59) possibly_damaging(0.811) TCGA-AZ-6601-01 1 43916268 43916268 T C SZT2 3'UTR 0.19 TCGA-AZ-6601-01 1 44086510 44086510 A G PTPRF Missense_Mutation p.D1789G 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6601-01 1 44163621 44163621 C A KDM4A Silent p.T926T 0.15 TCGA-AZ-6601-01 1 44422132 44422132 G A IPO13 Missense_Mutation p.R321Q 0.30 deleterious(0.01) benign(0.09) TCGA-AZ-6601-01 1 44456012 44456012 C T B4GALT2 Silent p.D366D 0.28 TCGA-AZ-6601-01 1 45190995 45190995 A C C1orf228 Missense_Mutation p.N415H 0.24 tolerated_low_confidence(0.1) possibly_damaging(0.568) TCGA-AZ-6601-01 1 46499927 46499927 C T MAST2 Missense_Mutation p.A1286V 0.20 tolerated_low_confidence(0.06) benign(0.184) TCGA-AZ-6601-01 1 46500666 46500666 C T MAST2 Missense_Mutation p.P1442L 0.24 tolerated_low_confidence(0.65) benign(0.011) TCGA-AZ-6601-01 1 46685533 46685533 C T LURAP1 Missense_Mutation p.R121C 0.12 deleterious(0.05) possibly_damaging(0.629) TCGA-AZ-6601-01 1 46745901 46745901 G A LRRC41 Silent p.S661S 0.24 TCGA-AZ-6601-01 1 46764036 46764036 G A LRRC41 Missense_Mutation p.P69L 0.19 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 1 52821306 52821306 G A CC2D1B Missense_Mutation p.R727W 0.24 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 1 53544591 53544591 C T PODN Missense_Mutation p.A518V 0.19 tolerated(0.05) possibly_damaging(0.908) TCGA-AZ-6601-01 1 55075296 55075296 G A FAM151A Missense_Mutation p.A468V 0.16 deleterious(0.05) possibly_damaging(0.696) TCGA-AZ-6601-01 1 55253402 55253402 C T TTC22 Missense_Mutation p.E241K 0.26 tolerated(0.3) benign(0.003) TCGA-AZ-6601-01 1 55472923 55472923 C T BSND Missense_Mutation p.R176C 0.23 tolerated(0.06) benign(0.001) TCGA-AZ-6601-01 1 59139252 59139252 G A MYSM1 Missense_Mutation p.T522M 0.11 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 1 5951028 5951028 C T NPHP4 Missense_Mutation p.R735Q 0.21 tolerated(1) benign(0.006) TCGA-AZ-6601-01 1 62253580 62253580 C - INADL Frame_Shift_Del p.P337Lfs*13 0.31 TCGA-AZ-6601-01 1 6267467 6267467 G A RNF207 Missense_Mutation p.G74R 0.24 deleterious(0.04) possibly_damaging(0.536) TCGA-AZ-6601-01 1 62970433 62970433 T C DOCK7 Silent p.E1513E 0.28 TCGA-AZ-6601-01 1 65855252 65855252 T G DNAJC6 Silent p.P470P 0.27 TCGA-AZ-6601-01 1 6648413 6648413 C T ZBTB48 Missense_Mutation p.T531I 0.23 deleterious(0.01) possibly_damaging(0.895) TCGA-AZ-6601-01 1 67469997 67469997 A G SLC35D1 3'UTR 0.16 TCGA-AZ-6601-01 1 68897198 68897198 G A RPE65 Missense_Mutation p.T400I 0.20 deleterious(0.03) possibly_damaging(0.821) TCGA-AZ-6601-01 1 70504754 70504754 G A LRRC7 Missense_Mutation p.E1045K 0.22 tolerated(0.11) benign(0.169) TCGA-AZ-6601-01 1 70766510 70766510 C T ANKRD13C Silent p.A286A 0.23 TCGA-AZ-6601-01 1 71512858 71512858 G A PTGER3 Silent p.L135L 0.20 TCGA-AZ-6601-01 1 74670192 74670193 - C FPGT Frame_Shift_Ins p.N157Kfs*13 0.24 TCGA-AZ-6601-01 1 74835257 74835257 A G FPGT-TNNI3K Missense_Mutation p.H666R 0.29 deleterious(0.05) probably_damaging(0.997) TCGA-AZ-6601-01 1 76878091 76878091 T C ST6GALNAC3 Silent p.T204T 0.40 TCGA-AZ-6601-01 1 82456427 82456427 A G LPHN2 Silent p.P1270P 0.14 TCGA-AZ-6601-01 1 8384664 8384664 G A SLC45A1 Missense_Mutation p.C92Y 0.25 deleterious(0) possibly_damaging(0.797) TCGA-AZ-6601-01 1 84878110 84878110 T C DNASE2B Missense_Mutation p.M209T 0.25 deleterious(0) benign(0.375) TCGA-AZ-6601-01 1 86590762 86590762 G A COL24A1 Silent p.N419N 0.19 TCGA-AZ-6601-01 1 90048830 90048830 C A LRRC8B Silent p.P207P 0.30 TCGA-AZ-6601-01 1 9027817 9027817 G A CA6 Missense_Mutation p.C224Y 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 1 92646436 92646436 G A KIAA1107 Missense_Mutation p.D628N 0.15 tolerated(1) benign(0) TCGA-AZ-6601-01 1 93730217 93730217 T - CCDC18 Intron 0.14 TCGA-AZ-6601-01 1 94520716 94520716 A T ABCA4 Missense_Mutation p.D846E 0.16 deleterious(0) probably_damaging(0.943) TCGA-AZ-6601-01 1 95007191 95007191 A G F3 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AZ-6601-01 1 9777159 9777159 C T PIK3CD Missense_Mutation p.A308V 0.24 tolerated(0.66) benign(0) TCGA-AZ-6601-01 1 9795138 9795138 C T CLSTN1 Missense_Mutation p.V660I 0.26 tolerated(0.46) benign(0.001) TCGA-AZ-6601-01 1 98039316 98039316 C A DPYD Missense_Mutation p.V447L 0.31 tolerated(0.14) benign(0.014) TCGA-AZ-6601-01 20 10633182 10633182 C T JAG1 Missense_Mutation p.G274S 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 20 13695554 13695554 C A ESF1 Missense_Mutation p.Q841H 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-6601-01 20 14306720 14306720 C T FLRT3 Missense_Mutation p.C478Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 20 1445061 1445061 G A NSFL1C Missense_Mutation p.A39V 0.23 deleterious(0) probably_damaging(0.95) TCGA-AZ-6601-01 20 168582 168582 A C DEFB128 Missense_Mutation p.L76R 0.18 tolerated(0.53) benign(0.047) TCGA-AZ-6601-01 20 18297167 18297167 G A ZNF133 Missense_Mutation p.G557S 0.13 tolerated(0.09) probably_damaging(1) TCGA-AZ-6601-01 20 19701832 19701832 C T SLC24A3 3'UTR 0.36 TCGA-AZ-6601-01 20 19955331 19955331 C T RIN2 Missense_Mutation p.P270L 0.24 tolerated(0.47) benign(0.004) TCGA-AZ-6601-01 20 21492732 21492732 C T NKX2-2 Silent p.A217A 0.10 TCGA-AZ-6601-01 20 22562511 22562511 G A FOXA2 Missense_Mutation p.R457W 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 20 2443404 2443404 A G SNRPB Missense_Mutation p.M188T 0.26 tolerated(0.71) unknown(0) TCGA-AZ-6601-01 20 25273189 25273189 C T PYGB Missense_Mutation p.A706V 0.16 deleterious(0.03) benign(0.083) TCGA-AZ-6601-01 20 26061972 26061972 G A FAM182A RNA 0.19 TCGA-AZ-6601-01 20 2774791 2774791 G A CPXM1 3'UTR 0.23 TCGA-AZ-6601-01 20 30070204 30070204 C T REM1 Missense_Mutation p.R180W 0.20 deleterious(0) probably_damaging(0.925) TCGA-AZ-6601-01 20 30556189 30556189 G A XKR7 Missense_Mutation p.G71S 0.22 tolerated(0.08) probably_damaging(1) TCGA-AZ-6601-01 20 30607199 30607199 C A CCM2L Missense_Mutation p.A307D 0.29 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 20 30753399 30753399 G A TM9SF4 3'UTR 0.36 TCGA-AZ-6601-01 20 308932 308932 C - SOX12 3'UTR 0.33 TCGA-AZ-6601-01 20 31021376 31021376 G A ASXL1 Missense_Mutation p.A459T 0.23 tolerated(0.22) benign(0.008) TCGA-AZ-6601-01 20 31876654 31876654 A G BPIFB1 Missense_Mutation p.S75G 0.24 tolerated(0.31) benign(0.034) TCGA-AZ-6601-01 20 31998031 31998031 C T SNTA1 Missense_Mutation p.V383M 0.24 deleterious(0) probably_damaging(0.955) TCGA-AZ-6601-01 20 32000134 32000134 C T SNTA1 Silent p.R336R 0.21 TCGA-AZ-6601-01 20 3209854 3209854 C T SLC4A11 Silent p.Q678Q 0.17 TCGA-AZ-6601-01 20 32247514 32247514 T C NECAB3 Missense_Mutation p.Q223R 0.08 tolerated(0.06) benign(0.009) TCGA-AZ-6601-01 20 32883218 32883218 C T AHCY Missense_Mutation p.V68I 0.16 tolerated_low_confidence(0.51) benign(0.002) TCGA-AZ-6601-01 20 33764542 33764542 G A PROCR Missense_Mutation p.V215I 0.23 tolerated(1) benign(0.004) TCGA-AZ-6601-01 20 33862213 33862213 G A MMP24 Missense_Mutation p.R580Q 0.10 tolerated(0.21) probably_damaging(0.994) TCGA-AZ-6601-01 20 34099279 34099279 G A CEP250 Missense_Mutation p.A2385T 0.22 possibly_damaging(0.526) TCGA-AZ-6601-01 20 34268744 34268744 C A NFS1 Missense_Mutation p.Q235H 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 20 35152722 35152722 G A DLGAP4 Missense_Mutation p.R858Q 0.24 deleterious(0.02) probably_damaging(0.947) TCGA-AZ-6601-01 20 35238096 35238096 C T C20orf24 Intron 0.27 TCGA-AZ-6601-01 20 35262972 35262972 C T SLA2 Missense_Mutation p.V38M 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 20 3670744 3670745 TG - SIGLEC1 Frame_Shift_Del p.I1587Pfs*85 0.25 TCGA-AZ-6601-01 20 36767931 36767931 C T TGM2 Missense_Mutation p.D409N 0.19 tolerated(0.11) benign(0.281) TCGA-AZ-6601-01 20 36937356 36937356 T G BPI Silent p.L94L 0.18 TCGA-AZ-6601-01 20 3734779 3734779 G A C20orf27 Silent p.L176L 0.26 TCGA-AZ-6601-01 20 39974435 39974435 G A LPIN3 Splice_Site 0.27 TCGA-AZ-6601-01 20 40126088 40126088 C T CHD6 Missense_Mutation p.R343H 0.13 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 20 41385177 41385177 C T PTPRT Missense_Mutation p.V262I 0.08 tolerated(0.26) benign(0) TCGA-AZ-6601-01 20 42169559 42169559 G A L3MBTL1 Intron 0.17 TCGA-AZ-6601-01 20 43964547 43964547 T C SDC4 Missense_Mutation p.E25G 0.18 deleterious(0) possibly_damaging(0.792) TCGA-AZ-6601-01 20 44987422 44987422 G A SLC35C2 5'UTR 0.11 TCGA-AZ-6601-01 20 47768133 47768133 G A STAU1 Missense_Mutation p.P166S 0.21 tolerated(0.09) possibly_damaging(0.809) TCGA-AZ-6601-01 20 47851537 47851537 C T DDX27 Missense_Mutation p.R478C 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 20 47886802 47886802 C A ZNFX1 Missense_Mutation p.R516M 0.17 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 20 47886804 47886804 G A ZNFX1 Silent p.Y515Y 0.08 TCGA-AZ-6601-01 20 48098720 48098720 G A KCNB1 Missense_Mutation p.R100C 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 20 49195113 49195113 G A PTPN1 Missense_Mutation p.A217T 0.24 deleterious(0) probably_damaging(0.981) TCGA-AZ-6601-01 20 49620992 49620992 C T KCNG1 Missense_Mutation p.E376K 0.18 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 20 50273612 50273612 G A ATP9A Silent p.H457H 0.25 TCGA-AZ-6601-01 20 51871890 51871890 C T TSHZ2 Silent p.G631G 0.17 TCGA-AZ-6601-01 20 52789987 52789987 G A CYP24A1 Silent p.C44C 0.35 TCGA-AZ-6601-01 20 54573408 54573408 G A CBLN4 3'UTR 0.42 TCGA-AZ-6601-01 20 56093912 56093912 C T CTCFL Missense_Mutation p.A321T 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 20 57242620 57242620 G A STX16 Silent p.R73R 0.23 TCGA-AZ-6601-01 20 57766658 57766658 C T ZNF831 Missense_Mutation p.T195M 0.31 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 20 58514114 58514114 G A PPP1R3D Silent p.C291C 0.16 TCGA-AZ-6601-01 20 60508129 60508129 G A CDH4 Missense_Mutation p.V776I 0.07 tolerated(0.05) possibly_damaging(0.884) TCGA-AZ-6601-01 20 60913341 60913341 C A LAMA5 Missense_Mutation p.G568V 0.18 probably_damaging(1) TCGA-AZ-6601-01 20 61488919 61488919 G A TCFL5 Nonsense_Mutation p.R356* 0.10 TCGA-AZ-6601-01 20 61637399 61637399 G A BHLHE23 3'UTR 0.25 TCGA-AZ-6601-01 20 61919087 61919087 G A ARFGAP1 Silent p.S369S 0.11 TCGA-AZ-6601-01 20 62163879 62163879 C T PTK6 Missense_Mutation p.D278N 0.26 tolerated(0.43) benign(0.049) TCGA-AZ-6601-01 20 62173661 62173661 G T SRMS Silent p.L267L 0.30 TCGA-AZ-6601-01 20 62173813 62173813 G A SRMS Missense_Mutation p.A256V 0.17 deleterious(0.04) possibly_damaging(0.615) TCGA-AZ-6601-01 20 62193193 62193193 G A HELZ2 Missense_Mutation p.S2225L 0.17 deleterious(0) probably_damaging(0.955) TCGA-AZ-6601-01 20 62198555 62198555 C T HELZ2 Missense_Mutation p.R719H 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 20 62203486 62203486 G T HELZ2 Missense_Mutation p.L85I 0.10 deleterious(0.01) benign(0.237) TCGA-AZ-6601-01 20 62227056 62227056 G A GMEB2 Missense_Mutation p.R176C 0.22 deleterious(0) probably_damaging(0.99) TCGA-AZ-6601-01 20 62321702 62321702 T C RTEL1 Missense_Mutation p.V798A 0.12 tolerated(0.95) benign(0.012) TCGA-AZ-6601-01 20 62331835 62331835 C T ARFRP1 Missense_Mutation p.R189Q 0.16 deleterious(0.03) benign(0.223) TCGA-AZ-6601-01 20 62421874 62421874 C T ZBTB46 Silent p.T79T 0.13 TCGA-AZ-6601-01 20 62729410 62729410 G A OPRL1 Silent p.T163T 0.09 TCGA-AZ-6601-01 20 629516 629516 C A RP5-850E9.3 Missense_Mutation p.R90M 0.24 unknown(0) TCGA-AZ-6601-01 21 19666631 19666631 G A TMPRSS15 Silent p.L814L 0.08 TCGA-AZ-6601-01 21 30699008 30699008 C A BACH1 Missense_Mutation p.P288H 0.14 tolerated(0.32) benign(0) TCGA-AZ-6601-01 21 31692544 31692544 C T KRTAP26-1 5'UTR 0.12 TCGA-AZ-6601-01 21 31874302 31874302 C T KRTAP19-5 Missense_Mutation p.G36D 0.13 tolerated_low_confidence(0.32) unknown(0) TCGA-AZ-6601-01 21 32537320 32537320 G A TIAM1 Missense_Mutation p.P984S 0.21 tolerated(0.72) benign(0.002) TCGA-AZ-6601-01 21 32617905 32617905 C T TIAM1 Missense_Mutation p.V495I 0.24 tolerated(0.2) benign(0.026) TCGA-AZ-6601-01 21 33371489 33371489 C T HUNK Nonsense_Mutation p.Q713* 0.27 TCGA-AZ-6601-01 21 33975549 33975549 C A AP000275.65 Missense_Mutation p.K196N 0.23 deleterious(0) probably_damaging(0.994) TCGA-AZ-6601-01 21 34186025 34186025 C T C21orf62 5'UTR 0.21 TCGA-AZ-6601-01 21 34924143 34924143 G A SON Missense_Mutation p.G869D 0.18 probably_damaging(0.931) TCGA-AZ-6601-01 21 35468173 35468173 T C SLC5A3 Missense_Mutation p.S226P 0.08 deleterious(0.04) benign(0.009) TCGA-AZ-6601-01 21 37571454 37571454 G A DOPEY2 Silent p.L75L 0.22 TCGA-AZ-6601-01 21 37632997 37632997 C A DOPEY2 Missense_Mutation p.P1761H 0.26 tolerated(0.06) probably_damaging(0.945) TCGA-AZ-6601-01 21 38539861 38539861 C A TTC3 Missense_Mutation p.S1469Y 0.12 deleterious(0) possibly_damaging(0.781) TCGA-AZ-6601-01 21 40194604 40194604 C T ETS2 Missense_Mutation p.R401C 0.29 tolerated(0.07) probably_damaging(0.974) TCGA-AZ-6601-01 21 41452117 41452117 C T DSCAM Missense_Mutation p.R1461H 0.20 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 21 43239943 43239943 C A PRDM15 Missense_Mutation p.G1118V 0.13 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 21 43327135 43327135 G A C2CD2 Silent p.R428R 0.13 TCGA-AZ-6601-01 21 43771005 43771005 G A TFF2 Missense_Mutation p.A21V 0.24 tolerated(0.6) benign(0.001) TCGA-AZ-6601-01 21 43938589 43938589 C T SLC37A1 Missense_Mutation p.R9C 0.29 deleterious(0.02) probably_damaging(0.97) TCGA-AZ-6601-01 21 43984830 43984830 C T SLC37A1 Missense_Mutation p.A383V 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 21 44329047 44329047 G A NDUFV3 Silent p.T446T 0.17 TCGA-AZ-6601-01 21 45738382 45738382 G A PFKL Missense_Mutation p.M322I 0.21 tolerated(0.3) benign(0.003) TCGA-AZ-6601-01 21 45744799 45744799 C T PFKL Missense_Mutation p.R626W 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 21 45786814 45786814 A G TRPM2 Missense_Mutation p.T201A 0.15 deleterious(0.02) possibly_damaging(0.606) TCGA-AZ-6601-01 21 45987780 45987780 G A TSPEAR Silent p.A64A 0.21 TCGA-AZ-6601-01 21 46021403 46021403 G A KRTAP10-7 Silent p.Q294Q 0.15 TCGA-AZ-6601-01 21 46021736 46021736 C T KRTAP10-7 3'UTR 0.22 TCGA-AZ-6601-01 21 46311821 46311821 C T ITGB2 Missense_Mutation p.V439M 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-AZ-6601-01 21 46596347 46596347 G A ADARB1 Missense_Mutation p.R244H 0.26 deleterious(0.04) probably_damaging(0.992) TCGA-AZ-6601-01 21 46841423 46841423 C T COL18A1-AS1 RNA 0.27 TCGA-AZ-6601-01 21 47361645 47361645 G A PCBP3 3'UTR 0.20 TCGA-AZ-6601-01 21 47406926 47406926 C G COL6A1 Silent p.G219G 0.19 TCGA-AZ-6601-01 21 47705018 47705018 A G MCM3AP Silent p.S61S 0.27 TCGA-AZ-6601-01 21 47722448 47722448 T G C21orf58 Missense_Mutation p.Q255P 0.19 deleterious(0) probably_damaging(0.991) TCGA-AZ-6601-01 21 47986475 47986475 C T DIP2A Missense_Mutation p.R1448W 0.24 deleterious(0.03) possibly_damaging(0.826) TCGA-AZ-6601-01 22 17083064 17083064 G A TPTEP1 RNA 0.25 TCGA-AZ-6601-01 22 17600384 17600384 G A CECR6 Missense_Mutation p.P545L 0.26 tolerated_low_confidence(0.22) benign(0.013) TCGA-AZ-6601-01 22 17662829 17662829 A G CECR1 Silent p.D441D 0.17 TCGA-AZ-6601-01 22 19868186 19868186 G A TXNRD2 Missense_Mutation p.R381W 0.21 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 22 20785062 20785062 G A SCARF2 Missense_Mutation p.R330C 0.15 tolerated(0.12) probably_damaging(0.921) TCGA-AZ-6601-01 22 21157580 21157580 G A PI4KA Missense_Mutation p.P497L 0.15 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 22 21800480 21800480 C T HIC2 Silent p.Y432Y 0.21 TCGA-AZ-6601-01 22 22986824 22986824 G A GGTLC2 5'Flank 0.23 TCGA-AZ-6601-01 22 23235970 23235970 C T IGLL5 Silent p.F99F 0.24 TCGA-AZ-6601-01 22 23503108 23503108 C T RAB36 Missense_Mutation p.A287V 0.27 deleterious(0.01) possibly_damaging(0.58) TCGA-AZ-6601-01 22 23610673 23610673 G A BCR Missense_Mutation p.A611T 0.24 tolerated(0.08) probably_damaging(0.945) TCGA-AZ-6601-01 22 23744282 23744282 G - ZDHHC8P1 Intron 0.20 TCGA-AZ-6601-01 22 24432546 24432546 G A CABIN1 Missense_Mutation p.A5T 0.23 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 22 24563238 24563238 G A CABIN1 Missense_Mutation p.R1880H 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AZ-6601-01 22 24628803 24628803 G A GGT5 Missense_Mutation p.A195V 0.17 tolerated(0.27) benign(0.329) TCGA-AZ-6601-01 22 25158350 25158350 C T PIWIL3 Intron 0.23 TCGA-AZ-6601-01 22 25598681 25598681 G A CRYBB3 Missense_Mutation p.C39Y 0.30 tolerated(1) benign(0.041) TCGA-AZ-6601-01 22 26838463 26838463 G A ASPHD2 Missense_Mutation p.G309R 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-6601-01 22 28196494 28196494 C T MN1 Missense_Mutation p.S13N 0.28 probably_damaging(0.916) TCGA-AZ-6601-01 22 28378695 28378695 G T TTC28 Silent p.P2320P 0.25 TCGA-AZ-6601-01 22 29655014 29655014 C T EMID1 3'UTR 0.31 TCGA-AZ-6601-01 22 29704661 29704661 C A GAS2L1 Missense_Mutation p.P189H 0.38 deleterious(0.02) benign(0.235) TCGA-AZ-6601-01 22 29726421 29726421 G A AP1B1 Silent p.N904N 0.29 TCGA-AZ-6601-01 22 30125589 30125589 C T CABP7 3'UTR 0.20 TCGA-AZ-6601-01 22 30688801 30688801 C T TBC1D10A Missense_Mutation p.E371K 0.25 deleterious(0) probably_damaging(0.957) TCGA-AZ-6601-01 22 30887699 30887699 G A SEC14L4 Silent p.I314I 0.16 TCGA-AZ-6601-01 22 31059604 31059604 G A DUSP18 Silent p.D129D 0.23 TCGA-AZ-6601-01 22 31301830 31301830 C T OSBP2 Silent p.N794N 0.23 TCGA-AZ-6601-01 22 31333617 31333617 C T MORC2 Missense_Mutation p.R422H 0.22 tolerated(0.35) benign(0.008) TCGA-AZ-6601-01 22 31335684 31335684 G A MORC2 Nonsense_Mutation p.R271* 0.33 TCGA-AZ-6601-01 22 31536280 31536280 A G PLA2G3 Missense_Mutation p.S21P 0.21 tolerated(0.11) benign(0.015) TCGA-AZ-6601-01 22 31942872 31942872 C T SFI1 Missense_Mutation p.R122W 0.19 deleterious(0.04) possibly_damaging(0.703) TCGA-AZ-6601-01 22 32007130 32007130 C T SFI1 Silent p.G752G 0.17 TCGA-AZ-6601-01 22 32019770 32019770 G A PISD Missense_Mutation p.A40V 0.24 deleterious_low_confidence(0.03) benign(0.108) TCGA-AZ-6601-01 22 32108869 32108869 C A PRR14L Missense_Mutation p.K1652N 0.31 tolerated(0.09) possibly_damaging(0.836) TCGA-AZ-6601-01 22 32482256 32482256 C A SLC5A1 Silent p.T357T 0.21 TCGA-AZ-6601-01 22 32914091 32914091 G A SYN3 Missense_Mutation p.R517C 0.21 tolerated(0.06) probably_damaging(0.994) TCGA-AZ-6601-01 22 33245468 33245468 C A TIMP3 Missense_Mutation p.L51M 0.21 tolerated(0.26) possibly_damaging(0.503) TCGA-AZ-6601-01 22 35811869 35811869 G A MCM5 Silent p.S417S 0.08 TCGA-AZ-6601-01 22 36142522 36142522 G A RBFOX2 Silent p.D412D 0.19 TCGA-AZ-6601-01 22 36206021 36206021 C T RBFOX2 Missense_Mutation p.A90T 0.23 benign(0.004) TCGA-AZ-6601-01 22 36538068 36538068 A C APOL3 Missense_Mutation p.L130R 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-AZ-6601-01 22 37267715 37267715 C T NCF4 Silent p.G164G 0.09 TCGA-AZ-6601-01 22 37499661 37499661 C T TMPRSS6 5'UTR 0.22 TCGA-AZ-6601-01 22 37602679 37602679 C T SSTR3 Silent p.P388P 0.21 TCGA-AZ-6601-01 22 37891873 37891873 G A CARD10 Nonsense_Mutation p.R733* 0.14 TCGA-AZ-6601-01 22 37964745 37964745 G A CDC42EP1 Missense_Mutation p.S365N 0.28 deleterious_low_confidence(0.05) unknown(0) TCGA-AZ-6601-01 22 38352900 38352900 G A POLR2F Intron 0.27 TCGA-AZ-6601-01 22 38474460 38474460 C T SLC16A8 Missense_Mutation p.A484T 0.28 tolerated(0.33) benign(0.024) TCGA-AZ-6601-01 22 38698946 38698946 C A CSNK1E Missense_Mutation p.G86W 0.20 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-AZ-6601-01 22 38823567 38823567 C T KCNJ4 Missense_Mutation p.A191T 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6601-01 22 39078362 39078362 T C TOMM22 Missense_Mutation p.L51P 0.16 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 22 39079821 39079821 T C TOMM22 Missense_Mutation p.L135P 0.05 tolerated(0.05) possibly_damaging(0.771) TCGA-AZ-6601-01 22 39224361 39224361 G A NPTXR Missense_Mutation p.R261C 0.20 deleterious(0.01) possibly_damaging(0.594) TCGA-AZ-6601-01 22 39262969 39262969 G A CBX6 Missense_Mutation p.R162C 0.33 deleterious(0) probably_damaging(0.973) TCGA-AZ-6601-01 22 39388141 39388141 G A APOBEC3B Missense_Mutation p.R374Q 0.24 tolerated(0.97) benign(0) TCGA-AZ-6601-01 22 40074068 40074068 A G CACNA1I Silent p.T1670T 0.29 TCGA-AZ-6601-01 22 40417341 40417341 T G FAM83F Missense_Mutation p.L276R 0.09 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 22 40662617 40662617 G A TNRC6B Missense_Mutation p.G795S 0.27 tolerated(0.84) benign(0.019) TCGA-AZ-6601-01 22 40708931 40708931 G A TNRC6B Silent p.S1536S 0.23 TCGA-AZ-6601-01 22 41572908 41572908 C T EP300 Silent p.R1731R 0.22 TCGA-AZ-6601-01 22 41613283 41613283 G A L3MBTL2 Intron 0.14 TCGA-AZ-6601-01 22 41970850 41970850 C - CSDC2 Frame_Shift_Del p.H140Tfs*125 0.21 TCGA-AZ-6601-01 22 42263244 42263244 G A SREBF2 Silent p.Q166Q 0.20 TCGA-AZ-6601-01 22 42392784 42392784 T C SEPT3 Intron 0.19 TCGA-AZ-6601-01 22 42970002 42970002 G A SERHL2 Missense_Mutation p.V296M 0.25 deleterious(0.01) probably_damaging(0.957) TCGA-AZ-6601-01 22 42970809 42970809 C T SERHL2 3'Flank 0.28 TCGA-AZ-6601-01 22 43460273 43460273 C T TTLL1 Silent p.P187P 0.26 TCGA-AZ-6601-01 22 43558844 43558844 G A TSPO Silent p.A119A 0.19 TCGA-AZ-6601-01 22 44586539 44586539 C T PARVG Missense_Mutation p.T166I 0.13 tolerated(0.44) benign(0.002) TCGA-AZ-6601-01 22 45279085 45279085 G A PHF21B Nonsense_Mutation p.Q493* 0.21 TCGA-AZ-6601-01 22 45757748 45757748 C A SMC1B Missense_Mutation p.E893D 0.23 tolerated(0.15) benign(0.14) TCGA-AZ-6601-01 22 46614173 46614173 G A PPARA Missense_Mutation p.R128Q 0.19 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 22 46785371 46785371 G A CELSR1 Missense_Mutation p.T2124M 0.27 tolerated(0.06) probably_damaging(0.988) TCGA-AZ-6601-01 22 47433075 47433075 G A TBC1D22A Missense_Mutation p.R437H 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 22 50181098 50181098 G A BRD1 Missense_Mutation p.R802W 0.30 deleterious(0) probably_damaging(0.928) TCGA-AZ-6601-01 22 50282398 50282398 G A ZBED4 3'UTR 0.22 TCGA-AZ-6601-01 22 50528763 50528763 G A MOV10L1 Intron 0.14 TCGA-AZ-6601-01 22 50655699 50655699 C T SELO Silent p.A637A 0.11 TCGA-AZ-6601-01 22 50722077 50722077 C T PLXNB2 Missense_Mutation p.G842S 0.15 deleterious(0.01) possibly_damaging(0.752) TCGA-AZ-6601-01 22 50728001 50728001 C T PLXNB2 Missense_Mutation p.R338H 0.12 tolerated(0.1) benign(0.019) TCGA-AZ-6601-01 22 50898584 50898584 C T SBF1 Silent p.S1096S 0.21 TCGA-AZ-6601-01 22 50903150 50903150 G T SBF1 Silent p.A483A 0.11 TCGA-AZ-6601-01 22 50957916 50957916 T C NCAPH2 Intron 0.24 TCGA-AZ-6601-01 22 50962300 50962300 C T SCO2 Missense_Mutation p.V181I 0.09 tolerated(0.06) benign(0.338) TCGA-AZ-6601-01 22 50962330 50962330 G A SCO2 Missense_Mutation p.R171W 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 22 50986840 50986840 T C KLHDC7B Missense_Mutation p.L82P 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-AZ-6601-01 22 51012841 51012841 G A CPT1B Missense_Mutation p.A298V 0.30 tolerated(0.47) benign(0.027) TCGA-AZ-6601-01 22 51064623 51064623 C T ARSA Missense_Mutation p.R313Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 2 10095093 10095093 C T GRHL1 Missense_Mutation p.R24W 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-6601-01 2 101606816 101606816 G A NPAS2 Silent p.P642P 0.22 TCGA-AZ-6601-01 2 10192740 10192740 C T KLF11 3'UTR 0.29 TCGA-AZ-6601-01 2 102641127 102641127 G A IL1R2 Missense_Mutation p.R295H 0.24 tolerated(0.16) benign(0.033) TCGA-AZ-6601-01 2 102842448 102842448 T C IL1RL2 Missense_Mutation p.I361T 0.21 deleterious(0) possibly_damaging(0.891) TCGA-AZ-6601-01 2 10583401 10583401 G A ODC1 Silent p.G235G 0.22 TCGA-AZ-6601-01 2 105924508 105924508 G A TGFBRAP1 Missense_Mutation p.A84V 0.23 deleterious(0) probably_damaging(0.924) TCGA-AZ-6601-01 2 11052652 11052652 C T KCNF1 Nonsense_Mutation p.Q34* 0.28 TCGA-AZ-6601-01 2 11053106 11053106 C T KCNF1 Missense_Mutation p.A185V 0.32 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 2 111435643 111435643 C A BUB1 5'UTR 0.20 TCGA-AZ-6601-01 2 112779082 112779082 G A MERTK Missense_Mutation p.R758H 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 2 113180139 113180139 C T RGPD8 Missense_Mutation p.V80I 0.15 tolerated(0.2) probably_damaging(0.989) TCGA-AZ-6601-01 2 113984831 113984831 G A PAX8 Nonsense_Mutation p.R364* 0.12 TCGA-AZ-6601-01 2 118731558 118731558 C T CCDC93 Missense_Mutation p.A272T 0.23 tolerated(0.14) benign(0.065) TCGA-AZ-6601-01 2 119731958 119731958 G A MARCO Silent p.P170P 0.24 TCGA-AZ-6601-01 2 128381771 128381771 G A MYO7B Missense_Mutation p.R1282H 0.29 deleterious(0.03) probably_damaging(0.964) TCGA-AZ-6601-01 2 128409354 128409354 C T GPR17 3'UTR 0.32 TCGA-AZ-6601-01 2 129025997 129025997 G A HS6ST1 Silent p.G325G 0.18 TCGA-AZ-6601-01 2 131520045 131520045 C T AMER3 Missense_Mutation p.P134S 0.18 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 2 131798850 131798850 C T ARHGEF4 Silent p.N384N 0.22 TCGA-AZ-6601-01 2 132235902 132235902 G A TUBA3D Missense_Mutation p.G57R 0.22 tolerated_low_confidence(0.06) benign(0.344) TCGA-AZ-6601-01 2 135215693 135215693 G A TMEM163 Missense_Mutation p.A240V 0.10 tolerated(0.08) benign(0.254) TCGA-AZ-6601-01 2 135621048 135621048 C T ACMSD Silent p.F111F 0.24 TCGA-AZ-6601-01 2 136026690 136026690 T G ZRANB3 Missense_Mutation p.S410R 0.14 deleterious(0) possibly_damaging(0.776) TCGA-AZ-6601-01 2 136616994 136616994 G A MCM6 Silent p.S413S 0.12 TCGA-AZ-6601-01 2 136626239 136626239 G A MCM6 Missense_Mutation p.A186V 0.24 tolerated(0.22) benign(0.027) TCGA-AZ-6601-01 2 141259419 141259419 A C LRP1B Missense_Mutation p.F2896C 0.14 probably_damaging(0.926) TCGA-AZ-6601-01 2 144728329 144728329 C T GTDC1 Nonsense_Mutation p.W292* 0.19 TCGA-AZ-6601-01 2 1507809 1507809 G A TPO Missense_Mutation p.A826T 0.17 tolerated(1) benign(0.007) TCGA-AZ-6601-01 2 152514562 152514562 A G NEB Missense_Mutation p.Y2040H 0.16 benign(0.248) TCGA-AZ-6601-01 2 152520264 152520264 G A NEB Missense_Mutation p.S1854L 0.13 probably_damaging(0.995) TCGA-AZ-6601-01 2 160005686 160005686 C T TANC1 Missense_Mutation p.P133L 0.27 tolerated(0.14) possibly_damaging(0.775) TCGA-AZ-6601-01 2 160035221 160035221 C T TANC1 Missense_Mutation p.A686V 0.23 tolerated(0.53) benign(0.045) TCGA-AZ-6601-01 2 160732048 160732048 A G LY75-CD302 Silent p.S627S 0.30 TCGA-AZ-6601-01 2 163003891 163003891 G A GCG Nonsense_Mutation p.Q76* 0.21 TCGA-AZ-6601-01 2 163133222 163133222 C A IFIH1 Missense_Mutation p.S760I 0.25 deleterious(0.01) possibly_damaging(0.61) TCGA-AZ-6601-01 2 163150144 163150144 G A IFIH1 Silent p.S268S 0.17 TCGA-AZ-6601-01 2 165578723 165578723 C T COBLL1 Silent p.P286P 0.21 TCGA-AZ-6601-01 2 166533085 166533085 G A CSRNP3 Silent p.T224T 0.33 TCGA-AZ-6601-01 2 166848003 166848003 G A SCN1A Missense_Mutation p.R1928C 0.24 tolerated(0.13) benign(0) TCGA-AZ-6601-01 2 166909391 166909391 C T SCN1A Missense_Mutation p.R222Q 0.15 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 2 167129136 167129136 T C SCN9A Missense_Mutation p.T1031A 0.20 tolerated(0.12) benign(0.271) TCGA-AZ-6601-01 2 168106600 168106600 G A XIRP2 Missense_Mutation p.E2900K 0.15 benign(0.001) TCGA-AZ-6601-01 2 168726459 168726459 C T B3GALT1 Missense_Mutation p.H304Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 2 168920056 168920056 A G STK39 Missense_Mutation p.Y444H 0.21 tolerated(0.53) benign(0.06) TCGA-AZ-6601-01 2 170090091 170090091 C T LRP2 Missense_Mutation p.R1643Q 0.26 benign(0.006) TCGA-AZ-6601-01 2 170493079 170493079 C G PPIG Missense_Mutation p.D437E 0.15 tolerated_low_confidence(0.39) unknown(0) TCGA-AZ-6601-01 2 172809459 172809459 G A HAT1 Silent p.L83L 0.13 TCGA-AZ-6601-01 2 172928464 172928464 C T METAP1D Missense_Mutation p.T75M 0.23 tolerated(0.09) possibly_damaging(0.654) TCGA-AZ-6601-01 2 175318519 175318519 C A GPR155 Nonsense_Mutation p.E608* 0.20 TCGA-AZ-6601-01 2 175440055 175440055 C T WIPF1 Missense_Mutation p.G79R 0.22 tolerated(0.08) benign(0.419) TCGA-AZ-6601-01 2 177036843 177036843 G A HOXD3 Silent p.S380S 0.28 TCGA-AZ-6601-01 2 177054575 177054575 C T HOXD1 Missense_Mutation p.A231V 0.20 tolerated(0.08) benign(0.073) TCGA-AZ-6601-01 2 179393509 179393509 C A TTN Missense_Mutation p.G35657C 0.22 TCGA-AZ-6601-01 2 179396279 179396279 G A TTN Silent p.G35021G 0.17 TCGA-AZ-6601-01 2 179447784 179447784 G A TTN Missense_Mutation p.R21916W 0.41 TCGA-AZ-6601-01 2 1796156 1796156 G A MYT1L Silent p.H1117H 0.24 TCGA-AZ-6601-01 2 18113208 18113208 G A KCNS3 Silent p.R311R 0.18 TCGA-AZ-6601-01 2 182388979 182388979 T A ITGA4 Splice_Site p.X750_splice 0.19 TCGA-AZ-6601-01 2 182780478 182780478 G A SSFA2 Missense_Mutation p.S704N 0.35 tolerated(0.24) benign(0.007) TCGA-AZ-6601-01 2 183066426 183066426 C A PDE1A Missense_Mutation p.Q347H 0.16 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-6601-01 2 183387025 183387025 T - PDE1A Frame_Shift_Del p.M27Cfs*5 0.14 TCGA-AZ-6601-01 2 183730901 183730901 C T FRZB Missense_Mutation p.R127H 0.25 deleterious(0.04) benign(0.275) TCGA-AZ-6601-01 2 183800032 183800032 C T NCKAP1 Missense_Mutation p.A929T 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-AZ-6601-01 2 187697903 187697903 G A ZSWIM2 Silent p.Y295Y 0.12 TCGA-AZ-6601-01 2 189854844 189854844 G A COL3A1 Missense_Mutation p.R238Q 0.19 unknown(0) TCGA-AZ-6601-01 2 192815005 192815005 C T TMEFF2 3'UTR 0.26 TCGA-AZ-6601-01 2 196726584 196726584 G A DNAH7 Silent p.I2531I 0.20 TCGA-AZ-6601-01 2 200137189 200137189 C T SATB2 Silent p.S649S 0.24 TCGA-AZ-6601-01 2 201680115 201680115 G A BZW1 Missense_Mutation p.G71D 0.22 deleterious(0) probably_damaging(0.98) TCGA-AZ-6601-01 2 202003447 202003447 G A CFLAR Intron 0.29 TCGA-AZ-6601-01 2 202436669 202436669 G A ALS2CR11 Silent p.P276P 0.19 TCGA-AZ-6601-01 2 202700431 202700431 C T CDK15 Missense_Mutation p.R266W 0.12 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 2 202900823 202900823 G A FZD7 Missense_Mutation p.V485I 0.21 deleterious(0.05) probably_damaging(0.959) TCGA-AZ-6601-01 2 206587239 206587239 C T NRP2 Silent p.N157N 0.24 TCGA-AZ-6601-01 2 207611125 207611125 G A MDH1B Silent p.I414I 0.26 TCGA-AZ-6601-01 2 210561046 210561046 C T MAP2 Silent p.D1384D 0.19 TCGA-AZ-6601-01 2 210574837 210574837 C T MAP2 Silent p.V1644V 0.29 TCGA-AZ-6601-01 2 210594583 210594583 G A MAP2 Missense_Mutation p.R1722H 0.13 tolerated(0.16) benign(0.426) TCGA-AZ-6601-01 2 210889886 210889886 T C KANSL1L Missense_Mutation p.R836G 0.24 deleterious(0) benign(0.258) TCGA-AZ-6601-01 2 211302491 211302491 C A LANCL1 Missense_Mutation p.G266C 0.25 deleterious(0) probably_damaging(0.937) TCGA-AZ-6601-01 2 212589866 212589866 C T ERBB4 Missense_Mutation p.V226I 0.19 tolerated(0.2) benign(0.003) TCGA-AZ-6601-01 2 216284056 216284056 C A FN1 Missense_Mutation p.W576C 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 2 217293330 217293330 C T SMARCAL1 Missense_Mutation p.R387C 0.29 deleterious(0.02) probably_damaging(0.953) TCGA-AZ-6601-01 2 219093537 219093537 A C ARPC2 Missense_Mutation p.K62N 0.21 tolerated(0.05) possibly_damaging(0.738) TCGA-AZ-6601-01 2 219452361 219452362 AG - RQCD1 Frame_Shift_Del p.E162Nfs*14 0.21 TCGA-AZ-6601-01 2 219509532 219509532 G A ZNF142 Silent p.R569R 0.22 TCGA-AZ-6601-01 2 219900384 219900384 G A CCDC108 Silent p.P120P 0.30 TCGA-AZ-6601-01 2 220038143 220038143 C A CNPPD1 Missense_Mutation p.D207Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 2 220081102 220081103 - C ABCB6 Frame_Shift_Ins p.G319Wfs*115 0.23 TCGA-AZ-6601-01 2 220100502 220100502 C T ANKZF1 Missense_Mutation p.R626W 0.28 deleterious(0.02) probably_damaging(0.987) TCGA-AZ-6601-01 2 220111586 220111586 A G STK16 Silent p.L98L 0.25 TCGA-AZ-6601-01 2 220285043 220285043 C T DES Missense_Mutation p.A237V 0.16 tolerated(0.2) benign(0.03) TCGA-AZ-6601-01 2 220414513 220414513 G A TMEM198 Silent p.A340A 0.23 TCGA-AZ-6601-01 2 220420977 220420977 C T OBSL1 Silent p.V1458V 0.10 TCGA-AZ-6601-01 2 225371690 225371690 C T CUL3 Missense_Mutation p.R305H 0.26 tolerated(0.06) probably_damaging(0.992) TCGA-AZ-6601-01 2 227914843 227914843 T G COL4A4 Missense_Mutation p.E1052A 0.26 unknown(0) TCGA-AZ-6601-01 2 231222670 231222671 - A SP140L Frame_Shift_Ins p.M88Nfs*3 0.25 TCGA-AZ-6601-01 2 231264877 231264877 C T SP140L Silent p.D411D 0.19 TCGA-AZ-6601-01 2 231860851 231860851 C T SPATA3 5'UTR 0.29 TCGA-AZ-6601-01 2 231949760 231949760 T C PSMD1 Missense_Mutation p.Y584H 0.21 tolerated(0.11) benign(0.049) TCGA-AZ-6601-01 2 233394795 233394795 C T CHRND Missense_Mutation p.P256S 0.20 deleterious(0) probably_damaging(0.957) TCGA-AZ-6601-01 2 233405389 233405389 G T CHRNG Missense_Mutation p.M106I 0.22 tolerated(0.06) benign(0.035) TCGA-AZ-6601-01 2 233428956 233428956 G T EIF4E2 Splice_Site p.X91_splice 0.21 TCGA-AZ-6601-01 2 233527540 233527540 G A EFHD1 Missense_Mutation p.D111N 0.23 deleterious(0.03) probably_damaging(1) TCGA-AZ-6601-01 2 233704664 233704664 C T GIGYF2 Missense_Mutation p.R979W 0.11 unknown(0) TCGA-AZ-6601-01 2 234681074 234681074 G A UGT1A4 Missense_Mutation p.V492M 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 2 234915582 234915582 C T TRPM8 Silent p.N1072N 0.24 TCGA-AZ-6601-01 2 238283616 238283616 C T COL6A3 Missense_Mutation p.V1040I 0.21 probably_damaging(0.974) TCGA-AZ-6601-01 2 23865701 23865701 C T KLHL29 Silent p.T307T 0.24 TCGA-AZ-6601-01 2 239009088 239009088 G A ESPNL Missense_Mutation p.A10T 0.31 deleterious(0) probably_damaging(0.951) TCGA-AZ-6601-01 2 239237344 239237344 G A TRAF3IP1 Silent p.A124A 0.22 TCGA-AZ-6601-01 2 240500147 240500147 G A AC079612.1 Missense_Mutation p.A10T 0.24 possibly_damaging(0.682) TCGA-AZ-6601-01 2 240960685 240960685 C T NDUFA10 Missense_Mutation p.R130H 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 2 24098756 24098756 T - ATAD2B Frame_Shift_Del p.K307Rfs*57 0.20 TCGA-AZ-6601-01 2 241533371 241533371 G T CAPN10 Missense_Mutation p.R246L 0.25 tolerated(0.69) benign(0.015) TCGA-AZ-6601-01 2 241696837 241696837 C A KIF1A Missense_Mutation p.E919D 0.27 tolerated(0.27) benign(0.012) TCGA-AZ-6601-01 2 241816988 241816988 C T AGXT Missense_Mutation p.A294V 0.18 tolerated(1) benign(0.003) TCGA-AZ-6601-01 2 242192888 242192888 C T HDLBP Missense_Mutation p.E405K 0.25 tolerated(0.09) benign(0.065) TCGA-AZ-6601-01 2 242282466 242282466 A G SEPT2 Silent p.S218S 0.12 TCGA-AZ-6601-01 2 242432750 242432750 G A FARP2 Missense_Mutation p.V980M 0.24 deleterious(0) probably_damaging(0.989) TCGA-AZ-6601-01 2 24255779 24255779 G A C2orf44 Missense_Mutation p.A619V 0.23 tolerated(0.09) benign(0.286) TCGA-AZ-6601-01 2 242590474 242590474 T C ATG4B Silent p.P20P 0.10 TCGA-AZ-6601-01 2 242813902 242813902 G A CXXC11 Silent p.S65S 0.32 TCGA-AZ-6601-01 2 24431162 24431162 G A ITSN2 Missense_Mutation p.A1541V 0.19 tolerated(0.08) unknown(0) TCGA-AZ-6601-01 2 26539906 26539906 C T GPR113 Missense_Mutation p.V126I 0.25 tolerated_low_confidence(0.13) benign(0.016) TCGA-AZ-6601-01 2 26624841 26624841 G A DRC1 5'UTR 0.26 TCGA-AZ-6601-01 2 27301937 27301937 G C EMILIN1 Missense_Mutation p.A2P 0.37 probably_damaging(0.997) TCGA-AZ-6601-01 2 27587423 27587423 C T EIF2B4 Silent p.A492A 0.13 TCGA-AZ-6601-01 2 27601514 27601514 G A ZNF513 Missense_Mutation p.R207C 0.30 deleterious(0) possibly_damaging(0.898) TCGA-AZ-6601-01 2 27677472 27677472 C T IFT172 Missense_Mutation p.E1143K 0.18 deleterious(0.01) benign(0.146) TCGA-AZ-6601-01 2 27805524 27805524 C T C2orf16 3'UTR 0.25 TCGA-AZ-6601-01 2 29294162 29294162 G - C2orf71 Frame_Shift_Del p.P989Lfs*46 0.19 TCGA-AZ-6601-01 2 29498089 29498089 G A ALK Silent p.S639S 0.27 TCGA-AZ-6601-01 2 30143080 30143080 G A ALK Missense_Mutation p.A149V 0.27 tolerated_low_confidence(0.12) benign(0.057) TCGA-AZ-6601-01 2 39222289 39222289 G A SOS1 Silent p.S1107S 0.23 TCGA-AZ-6601-01 2 39944159 39944159 G A TMEM178A Missense_Mutation p.C221Y 0.25 deleterious(0) possibly_damaging(0.897) TCGA-AZ-6601-01 2 44200766 44200766 C T LRPPRC Missense_Mutation p.R450Q 0.22 tolerated(1) benign(0) TCGA-AZ-6601-01 2 44531325 44531325 G A SLC3A1 Missense_Mutation p.V394M 0.23 tolerated(1) benign(0.002) TCGA-AZ-6601-01 2 48872229 48872229 G A STON1-GTF2A1L Missense_Mutation p.A825T 0.06 deleterious(0.05) possibly_damaging(0.582) TCGA-AZ-6601-01 2 54482131 54482131 G A TSPYL6 Silent p.D386D 0.26 TCGA-AZ-6601-01 2 56144851 56144851 G A EFEMP1 Missense_Mutation p.R156C 0.18 deleterious(0.03) possibly_damaging(0.517) TCGA-AZ-6601-01 2 56149537 56149537 C T EFEMP1 Silent p.A13A 0.20 TCGA-AZ-6601-01 2 56599603 56599603 C A CCDC85A Missense_Mutation p.P481H 0.22 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-AZ-6601-01 2 61144153 61144153 G A REL Splice_Site p.X179_splice 0.20 TCGA-AZ-6601-01 2 61315355 61315355 C T KIAA1841 Missense_Mutation p.R318W 0.21 tolerated(0.15) possibly_damaging(0.729) TCGA-AZ-6601-01 2 65315769 65315769 G A RAB1A Missense_Mutation p.T159M 0.28 deleterious(0.04) benign(0.147) TCGA-AZ-6601-01 2 67630566 67630567 - A ETAA1 Frame_Shift_Ins p.P254Afs*13 0.11 TCGA-AZ-6601-01 2 70188014 70188014 C T ASPRV1 Silent p.K269K 0.17 TCGA-AZ-6601-01 2 70922859 70922859 G A ADD2 Silent p.S183S 0.21 TCGA-AZ-6601-01 2 71058931 71058931 G A CD207 Missense_Mutation p.A246V 0.22 tolerated(0.13) possibly_damaging(0.457) TCGA-AZ-6601-01 2 71300681 71300681 A G NAGK Missense_Mutation p.H225R 0.20 deleterious(0.03) possibly_damaging(0.729) TCGA-AZ-6601-01 2 73316500 73316500 C T RAB11FIP5 Intron 0.20 TCGA-AZ-6601-01 2 74143866 74143866 C T ACTG2 Silent p.L321L 0.09 TCGA-AZ-6601-01 2 74362759 74362759 C T BOLA3 Missense_Mutation p.M95I 0.24 deleterious(0) possibly_damaging(0.904) TCGA-AZ-6601-01 2 74441263 74441263 C T MTHFD2 Missense_Mutation p.T316I 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 2 74596584 74596584 T C DCTN1 Missense_Mutation p.E476G 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-6601-01 2 74688482 74688482 G A MOGS Missense_Mutation p.R812C 0.24 tolerated(0.05) possibly_damaging(0.773) TCGA-AZ-6601-01 2 74754119 74754119 C T AUP1 Missense_Mutation p.R382Q 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 2 74760874 74760874 A G LOXL3 Intron 0.13 TCGA-AZ-6601-01 2 74760956 74760956 C T LOXL3 Intron 0.21 TCGA-AZ-6601-01 2 75108947 75108947 C T HK2 Silent p.Y560Y 0.26 TCGA-AZ-6601-01 2 75425725 75425725 G A TACR1 Silent p.P112P 0.18 TCGA-AZ-6601-01 2 79253224 79253224 T C REG3G Missense_Mutation p.L2P 0.11 deleterious(0.02) benign(0.172) TCGA-AZ-6601-01 2 85777724 85777724 G A GGCX Nonsense_Mutation p.R680* 0.24 TCGA-AZ-6601-01 2 86302213 86302213 G A POLR1A Silent p.A517A 0.13 TCGA-AZ-6601-01 2 8998807 8998807 G A MBOAT2 3'UTR 0.24 TCGA-AZ-6601-01 2 9484865 9484865 G A ASAP2 Missense_Mutation p.R320Q 0.20 deleterious(0) possibly_damaging(0.747) TCGA-AZ-6601-01 2 95541468 95541468 C T TEKT4 Missense_Mutation p.R358C 0.27 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 2 96936924 96936924 G A CIAO1 Silent p.S285S 0.37 TCGA-AZ-6601-01 2 97217647 97217647 C T ARID5A Missense_Mutation p.A461V 0.22 tolerated(0.14) benign(0.113) TCGA-AZ-6601-01 2 97427945 97427945 C T CNNM4 Silent p.S403S 0.14 TCGA-AZ-6601-01 2 98928925 98928925 G A VWA3B 3'UTR 0.32 TCGA-AZ-6601-01 3 10084750 10084750 G A FANCD2 Missense_Mutation p.R302Q 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-AZ-6601-01 3 101136588 101136588 G A SENP7 Nonsense_Mutation p.R111* 0.18 TCGA-AZ-6601-01 3 10123065 10123065 A G FANCD2 Silent p.G1047G 0.18 TCGA-AZ-6601-01 3 10312013 10312013 G A TATDN2 Missense_Mutation p.A383T 0.17 tolerated(0.42) benign(0.014) TCGA-AZ-6601-01 3 10370648 10370648 G A ATP2B2 Silent p.A1194A 0.26 TCGA-AZ-6601-01 3 10387069 10387069 T C ATP2B2 Missense_Mutation p.Q901R 0.09 tolerated(0.11) probably_damaging(0.978) TCGA-AZ-6601-01 3 107492342 107492342 G A BBX Missense_Mutation p.A592T 0.21 tolerated(0.26) benign(0.003) TCGA-AZ-6601-01 3 108406945 108406945 T C DZIP3 Splice_Site p.X1090_splice 0.20 TCGA-AZ-6601-01 3 108635005 108635005 C A GUCA1C Missense_Mutation p.L137F 0.22 tolerated(0.18) benign(0.341) TCGA-AZ-6601-01 3 108677784 108677784 T - MORC1 3'UTR 0.15 TCGA-AZ-6601-01 3 113375166 113375166 C T KIAA2018 Missense_Mutation p.R1788H 0.31 probably_damaging(0.999) TCGA-AZ-6601-01 3 114069244 114069244 C A ZBTB20 Missense_Mutation p.A561S 0.29 tolerated(0.42) benign(0.007) TCGA-AZ-6601-01 3 114070511 114070511 G A ZBTB20 Silent p.S138S 0.22 TCGA-AZ-6601-01 3 119121032 119121032 G A ARHGAP31 Missense_Mutation p.R478H 0.16 tolerated(0.07) benign(0.011) TCGA-AZ-6601-01 3 119361264 119361264 C T POPDC2 3'UTR 0.13 TCGA-AZ-6601-01 3 119378908 119378908 C T POPDC2 Silent p.V121V 0.16 TCGA-AZ-6601-01 3 120321036 120321036 T - NDUFB4 Intron 0.13 TCGA-AZ-6601-01 3 120365144 120365144 G A HGD Missense_Mutation p.H207Y 0.23 tolerated(0.23) probably_damaging(0.985) TCGA-AZ-6601-01 3 121155018 121155018 G T POLQ Silent p.T2498T 0.17 TCGA-AZ-6601-01 3 121341480 121341480 T C FBXO40 Missense_Mutation p.C402R 0.26 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 3 121350739 121350739 C T HCLS1 Missense_Mutation p.G472D 0.13 deleterious(0) probably_damaging(0.982) TCGA-AZ-6601-01 3 121414027 121414027 G A GOLGB1 Silent p.T1781T 0.20 TCGA-AZ-6601-01 3 122437687 122437688 - A PARP14 Frame_Shift_Ins p.T1566Nfs*3 0.11 TCGA-AZ-6601-01 3 122591311 122591311 C T DIRC2 Silent p.S396S 0.24 TCGA-AZ-6601-01 3 122632414 122632414 G A SEMA5B Silent p.C803C 0.17 TCGA-AZ-6601-01 3 123021975 123021975 G A ADCY5 Missense_Mutation p.S884L 0.23 tolerated(0.51) benign(0.001) TCGA-AZ-6601-01 3 123441043 123441043 C T MYLK Missense_Mutation p.G579D 0.26 deleterious(0) benign(0.125) TCGA-AZ-6601-01 3 124732804 124732804 C T HEG1 Missense_Mutation p.G540D 0.27 tolerated(0.06) benign(0.287) TCGA-AZ-6601-01 3 125701254 125701254 G A ROPN1B Missense_Mutation p.V180I 0.23 tolerated(0.71) benign(0.009) TCGA-AZ-6601-01 3 125877289 125877289 C T ALDH1L1 Silent p.P117P 0.28 TCGA-AZ-6601-01 3 127399158 127399158 C T ABTB1 Missense_Mutation p.A426V 0.20 tolerated(0.07) benign(0.005) TCGA-AZ-6601-01 3 128182770 128182770 G A DNAJB8 5'UTR 0.26 TCGA-AZ-6601-01 3 128202797 128202797 C T GATA2 Missense_Mutation p.R308Q 0.22 deleterious(0) probably_damaging(0.986) TCGA-AZ-6601-01 3 128339381 128339381 G A RPN1 Missense_Mutation p.A566V 0.26 tolerated(0.8) benign(0.007) TCGA-AZ-6601-01 3 12859289 12859289 G - CAND2 Frame_Shift_Del p.V955Wfs*12 0.26 TCGA-AZ-6601-01 3 128890099 128890099 C T CNBP Missense_Mutation p.G82D 0.22 tolerated(0.07) benign(0.124) TCGA-AZ-6601-01 3 12940806 12940806 G A IQSEC1 3'UTR 0.33 TCGA-AZ-6601-01 3 131442376 131442376 G A CPNE4 Missense_Mutation p.R92W 0.25 deleterious(0) possibly_damaging(0.786) TCGA-AZ-6601-01 3 132185144 132185144 C T DNAJC13 Missense_Mutation p.P657L 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 3 133560231 133560231 G A RAB6B Nonsense_Mutation p.R63* 0.23 TCGA-AZ-6601-01 3 133692546 133692546 A C SLCO2A1 Missense_Mutation p.F120V 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 3 134078242 134078242 G A AMOTL2 Missense_Mutation p.R663W 0.19 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 3 134090319 134090319 C T AMOTL2 5'UTR 0.15 TCGA-AZ-6601-01 3 136287655 136287655 C T STAG1 Missense_Mutation p.A116T 0.20 deleterious(0.01) benign(0.271) TCGA-AZ-6601-01 3 136573684 136573684 C T SLC35G2 Missense_Mutation p.R128W 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6601-01 3 138003298 138003298 C T ARMC8 Missense_Mutation p.A570V 0.32 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 3 138179500 138179500 G A ESYT3 Silent p.P262P 0.19 TCGA-AZ-6601-01 3 138739176 138739176 C T PRR23B Missense_Mutation p.E110K 0.11 deleterious(0.02) possibly_damaging(0.863) TCGA-AZ-6601-01 3 140275407 140275407 G T CLSTN2 Missense_Mutation p.G576V 0.29 tolerated(0.11) benign(0.017) TCGA-AZ-6601-01 3 140401460 140401460 C T TRIM42 Silent p.C166C 0.22 TCGA-AZ-6601-01 3 14177408 14177408 G T TMEM43 Missense_Mutation p.E294D 0.18 deleterious(0.02) probably_damaging(0.951) TCGA-AZ-6601-01 3 14197856 14197856 C T XPC Missense_Mutation p.R671H 0.27 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 3 142731109 142731109 C T U2SURP Nonsense_Mutation p.R46* 0.19 TCGA-AZ-6601-01 3 142739529 142739529 C T U2SURP Missense_Mutation p.R243C 0.20 tolerated(0.05) possibly_damaging(0.551) TCGA-AZ-6601-01 3 14508088 14508088 C T SLC6A6 Missense_Mutation p.T266M 0.29 deleterious(0.02) probably_damaging(1) TCGA-AZ-6601-01 3 14563216 14563216 G A GRIP2 RNA 0.15 TCGA-AZ-6601-01 3 148460672 148460672 A - AGTR1 3'UTR 0.23 TCGA-AZ-6601-01 3 148575311 148575311 C T CPB1 Missense_Mutation p.P350L 0.22 deleterious(0) probably_damaging(0.99) TCGA-AZ-6601-01 3 148789133 148789133 C T HLTF Missense_Mutation p.R267Q 0.21 deleterious(0.04) possibly_damaging(0.631) TCGA-AZ-6601-01 3 15055242 15055242 C T NR2C2 Silent p.S92S 0.31 TCGA-AZ-6601-01 3 15115691 15115691 T C ZFYVE20 Silent p.L651L 0.28 TCGA-AZ-6601-01 3 152554637 152554637 G A P2RY1 Missense_Mutation p.D356N 0.35 tolerated(0.21) benign(0.043) TCGA-AZ-6601-01 3 156254499 156254499 G A KCNAB1 Missense_Mutation p.R408H 0.17 deleterious(0.01) possibly_damaging(0.532) TCGA-AZ-6601-01 3 156763369 156763369 C T LEKR1 Missense_Mutation p.R637C 0.21 tolerated(0.24) benign(0.002) TCGA-AZ-6601-01 3 15765921 15765921 C T ANKRD28 Missense_Mutation p.V221I 0.20 tolerated(0.09) benign(0.055) TCGA-AZ-6601-01 3 164781266 164781266 A G SI Missense_Mutation p.S291P 0.18 deleterious(0) probably_damaging(0.985) TCGA-AZ-6601-01 3 167217955 167217955 G A WDR49 Missense_Mutation p.P654L 0.23 tolerated(0.09) benign(0.027) TCGA-AZ-6601-01 3 17052746 17052746 G A PLCL2 Silent p.S510S 0.18 TCGA-AZ-6601-01 3 171455696 171455696 G T PLD1 Missense_Mutation p.P49H 0.23 deleterious(0.03) possibly_damaging(0.627) TCGA-AZ-6601-01 3 179103406 179103406 C T MFN1 Missense_Mutation p.T571M 0.17 tolerated(0.12) benign(0.025) TCGA-AZ-6601-01 3 183210426 183210426 C T KLHL6 Missense_Mutation p.G474R 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 3 183503951 183503951 C T YEATS2 Silent p.S925S 0.11 TCGA-AZ-6601-01 3 183696313 183696313 C T ABCC5 Missense_Mutation p.G425D 0.42 deleterious(0.02) possibly_damaging(0.898) TCGA-AZ-6601-01 3 183699621 183699621 G A ABCC5 Silent p.C347C 0.21 TCGA-AZ-6601-01 3 183854424 183854424 G A EIF2B5 Missense_Mutation p.A74T 0.09 tolerated(0.13) benign(0.046) TCGA-AZ-6601-01 3 183911466 183911466 C T ABCF3 Missense_Mutation p.R704C 0.25 deleterious(0.03) benign(0.013) TCGA-AZ-6601-01 3 183954325 183954325 C T VWA5B2 Silent p.H469H 0.25 TCGA-AZ-6601-01 3 183975408 183975408 G A ECE2 Missense_Mutation p.R115Q 0.22 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-AZ-6601-01 3 183995189 183995189 G A ECE2 Missense_Mutation p.R256H 0.25 tolerated(0.23) benign(0.073) TCGA-AZ-6601-01 3 184009985 184009985 G A ECE2 Missense_Mutation p.G871S 0.23 deleterious(0.04) probably_damaging(1) TCGA-AZ-6601-01 3 184025225 184025225 C T PSMD2 Silent p.N705N 0.18 TCGA-AZ-6601-01 3 185797681 185797681 G A ETV5 Missense_Mutation p.A192V 0.26 tolerated(0.19) benign(0.02) TCGA-AZ-6601-01 3 185990109 185990109 G A DGKG Missense_Mutation p.R312C 0.19 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 3 186395678 186395678 G A HRG 3'UTR 0.17 TCGA-AZ-6601-01 3 187416434 187416434 G A RTP2 Missense_Mutation p.T177I 0.22 tolerated(0.2) benign(0.002) TCGA-AZ-6601-01 3 187447774 187447774 C T BCL6 Missense_Mutation p.R140H 0.21 deleterious(0.03) probably_damaging(0.98) TCGA-AZ-6601-01 3 189586506 189586506 G A TP63 Splice_Site p.X377_splice 0.22 TCGA-AZ-6601-01 3 189590688 189590688 A G TP63 Missense_Mutation p.K418R 0.23 tolerated(0.41) benign(0.055) TCGA-AZ-6601-01 3 190347394 190347394 C T IL1RAP Intron 0.21 TCGA-AZ-6601-01 3 192078233 192078233 G A FGF12 Silent p.D98D 0.27 TCGA-AZ-6601-01 3 193334988 193334988 C T OPA1 Missense_Mutation p.P157L 0.20 tolerated(0.14) benign(0.07) TCGA-AZ-6601-01 3 194118573 194118573 T C GP5 Missense_Mutation p.N147D 0.29 tolerated(0.08) benign(0.033) TCGA-AZ-6601-01 3 194362680 194362680 G A LSG1 3'UTR 0.24 TCGA-AZ-6601-01 3 195492261 195492261 C T MUC4 Missense_Mutation p.E4560K 0.26 benign(0.113) TCGA-AZ-6601-01 3 195609047 195609047 A G TNK2 Silent p.A317A 0.20 TCGA-AZ-6601-01 3 195975175 195975175 A T PCYT1A Silent p.V79V 0.21 TCGA-AZ-6601-01 3 196387639 196387639 C T NRROS Silent p.P375P 0.22 TCGA-AZ-6601-01 3 196626607 196626607 A G SENP5 Silent p.R528R 0.25 TCGA-AZ-6601-01 3 197401932 197401932 G A KIAA0226 Missense_Mutation p.A959V 0.25 tolerated_low_confidence(0.22) unknown(0) TCGA-AZ-6601-01 3 197785640 197785640 G A ANKRD18DP RNA 0.26 TCGA-AZ-6601-01 3 20167543 20167543 C T KAT2B Silent p.N520N 0.21 TCGA-AZ-6601-01 3 21462859 21462859 G A ZNF385D Silent p.A345A 0.32 TCGA-AZ-6601-01 3 27394405 27394405 G A NEK10 5'UTR 0.29 TCGA-AZ-6601-01 3 27475544 27475544 C T SLC4A7 Missense_Mutation p.R205Q 0.25 tolerated(0.07) benign(0.207) TCGA-AZ-6601-01 3 32399025 32399025 C A CMTM8 Missense_Mutation p.P103H 0.28 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 3 32774937 32774937 G A CNOT10 Missense_Mutation p.G473D 0.21 tolerated(0.64) benign(0.432) TCGA-AZ-6601-01 3 33451063 33451063 G A UBP1 Missense_Mutation p.R196W 0.16 deleterious(0.03) possibly_damaging(0.662) TCGA-AZ-6601-01 3 33673866 33673866 G A CLASP2 Missense_Mutation p.A288V 0.23 tolerated(0.23) benign(0.001) TCGA-AZ-6601-01 3 35780985 35780985 A G ARPP21 Silent p.S608S 0.25 TCGA-AZ-6601-01 3 37067242 37067242 C T MLH1 Missense_Mutation p.R385C 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 3 37144470 37144470 C T LRRFIP2 Missense_Mutation p.R273H 0.22 deleterious(0.04) possibly_damaging(0.458) TCGA-AZ-6601-01 3 38125714 38125714 G A DLEC1 Silent p.T413T 0.18 TCGA-AZ-6601-01 3 38592865 38592865 G A SCN5A Silent p.L1666L 0.27 TCGA-AZ-6601-01 3 3886823 3886823 A - LRRN1 Frame_Shift_Del p.N168Ifs*3 0.23 TCGA-AZ-6601-01 3 38888510 38888510 T A SCN11A Missense_Mutation p.D1684V 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 3 39153966 39153966 C T TTC21A Silent p.G151G 0.22 TCGA-AZ-6601-01 3 39184626 39184626 C T CSRNP1 Missense_Mutation p.A564T 0.32 tolerated(0.44) benign(0.01) TCGA-AZ-6601-01 3 39185812 39185812 A G CSRNP1 Missense_Mutation p.L199P 0.15 deleterious(0.04) possibly_damaging(0.488) TCGA-AZ-6601-01 3 39225965 39225965 G A XIRP1 Missense_Mutation p.R1658W 0.26 deleterious(0.01) benign(0.446) TCGA-AZ-6601-01 3 39226497 39226497 G T XIRP1 Silent p.A1480A 0.17 TCGA-AZ-6601-01 3 39230340 39230340 C T XIRP1 Silent p.P199P 0.33 TCGA-AZ-6601-01 3 40085746 40085746 G A MYRIP Missense_Mutation p.V106I 0.18 tolerated(0.19) probably_damaging(0.987) TCGA-AZ-6601-01 3 41267183 41267183 T C CTNNB1 Missense_Mutation p.I256T 0.25 deleterious(0) probably_damaging(0.976) TCGA-AZ-6601-01 3 42251496 42251496 G A TRAK1 Intron 0.30 TCGA-AZ-6601-01 3 42610514 42610514 C T SEC22C Missense_Mutation p.V9M 0.21 deleterious(0) possibly_damaging(0.828) TCGA-AZ-6601-01 3 42684046 42684046 C T NKTR Missense_Mutation p.T1367I 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-AZ-6601-01 3 42701229 42701229 G A ZBTB47 Missense_Mutation p.R461H 0.19 deleterious(0.05) unknown(0) TCGA-AZ-6601-01 3 42733834 42733834 C T KLHL40 3'UTR 0.50 TCGA-AZ-6601-01 3 42916538 42916538 G A CYP8B1 Silent p.N257N 0.14 TCGA-AZ-6601-01 3 4403788 4403788 C T SUMF1 3'UTR 0.15 TCGA-AZ-6601-01 3 44607084 44607084 C A ZKSCAN7 Missense_Mutation p.P177T 0.26 tolerated(0.18) benign(0.054) TCGA-AZ-6601-01 3 44868979 44868979 C T KIF15 Missense_Mutation p.R939C 0.20 deleterious(0) possibly_damaging(0.808) TCGA-AZ-6601-01 3 44932151 44932151 C T TGM4 Silent p.N119N 0.21 TCGA-AZ-6601-01 3 44952826 44952826 C T TGM4 Missense_Mutation p.A614V 0.27 tolerated(0.63) benign(0.028) TCGA-AZ-6601-01 3 46486844 46486844 C T LTF Missense_Mutation p.A481T 0.15 deleterious(0) probably_damaging(0.918) TCGA-AZ-6601-01 3 46728607 46728607 G A ALS2CL Missense_Mutation p.R134W 0.29 deleterious(0.04) benign(0.014) TCGA-AZ-6601-01 3 4687320 4687320 G A ITPR1 Missense_Mutation p.E255K 0.21 tolerated(0.06) benign(0.438) TCGA-AZ-6601-01 3 47043264 47043264 C T NBEAL2 Missense_Mutation p.A1577V 0.25 tolerated(0.06) benign(0.434) TCGA-AZ-6601-01 3 47045584 47045584 C T NBEAL2 Missense_Mutation p.R1967W 0.21 deleterious(0) probably_damaging(0.929) TCGA-AZ-6601-01 3 47378200 47378200 G A KLHL18 Silent p.P358P 0.25 TCGA-AZ-6601-01 3 47779559 47779559 T A SMARCC1 Missense_Mutation p.N148I 0.09 deleterious(0.05) possibly_damaging(0.566) TCGA-AZ-6601-01 3 47894334 47894334 C T MAP4 3'UTR 0.31 TCGA-AZ-6601-01 3 4836776 4836776 G A ITPR1 Missense_Mutation p.R2264H 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-AZ-6601-01 3 48460385 48460385 G A PLXNB1 Missense_Mutation p.R966W 0.27 tolerated(0.18) benign(0) TCGA-AZ-6601-01 3 48461290 48461290 G T PLXNB1 Missense_Mutation p.P802H 0.24 deleterious(0.04) possibly_damaging(0.779) TCGA-AZ-6601-01 3 48465318 48465318 G T PLXNB1 Silent p.R235R 0.19 TCGA-AZ-6601-01 3 49114194 49114194 G A QRICH1 Missense_Mutation p.P86L 0.23 tolerated(0.2) possibly_damaging(0.713) TCGA-AZ-6601-01 3 49135912 49135912 C T QARS Missense_Mutation p.G653D 0.24 tolerated(1) benign(0.007) TCGA-AZ-6601-01 3 49168511 49168511 G A LAMB2 Missense_Mutation p.R263W 0.23 deleterious(0.01) probably_damaging(1) TCGA-AZ-6601-01 3 49568539 49568539 C T DAG1 Missense_Mutation p.L199F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6601-01 3 49695016 49695016 C T BSN Missense_Mutation p.T2676M 0.24 unknown(0) TCGA-AZ-6601-01 3 49742142 49742142 A G RNF123 Missense_Mutation p.M638V 0.29 tolerated(0.2) benign(0.031) TCGA-AZ-6601-01 3 49836267 49836267 C T CDHR4 Missense_Mutation p.G163R 0.25 tolerated(0.83) benign(0.042) TCGA-AZ-6601-01 3 50222158 50222158 G A SEMA3F Missense_Mutation p.R456H 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-AZ-6601-01 3 50231209 50231209 T C GNAT1 Missense_Mutation p.L158P 0.13 deleterious(0) probably_damaging(0.979) TCGA-AZ-6601-01 3 50312866 50312866 C T LSMEM2 5'Flank 0.22 TCGA-AZ-6601-01 3 50325516 50325516 A - IFRD2 3'UTR 0.37 TCGA-AZ-6601-01 3 50332326 50332326 G A HYAL3 Silent p.A236A 0.15 TCGA-AZ-6601-01 3 50340209 50340209 G A HYAL1 Missense_Mutation p.A60V 0.20 tolerated(0.22) benign(0.009) TCGA-AZ-6601-01 3 50685631 50685631 C A MAPKAPK3 3'UTR 0.36 TCGA-AZ-6601-01 3 51989713 51989713 G A GPR62 Silent p.S15S 0.26 TCGA-AZ-6601-01 3 51989805 51989805 G A GPR62 Missense_Mutation p.R46H 0.43 deleterious(0) possibly_damaging(0.542) TCGA-AZ-6601-01 3 52282239 52282239 C T PPM1M Missense_Mutation p.R49W 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6601-01 3 52391930 52391930 G T DNAH1 Missense_Mutation p.D1333Y 0.09 probably_damaging(0.999) TCGA-AZ-6601-01 3 52422905 52422905 C T DNAH1 Silent p.G3149G 0.28 TCGA-AZ-6601-01 3 52472955 52472955 A G SEMA3G Missense_Mutation p.M497T 0.18 deleterious(0) probably_damaging(0.985) TCGA-AZ-6601-01 3 52474775 52474775 G A SEMA3G Silent p.T331T 0.29 TCGA-AZ-6601-01 3 52797629 52797629 C T NEK4 Missense_Mutation p.M226I 0.14 deleterious(0.02) benign(0.344) TCGA-AZ-6601-01 3 52945123 52945123 C T SFMBT1 Missense_Mutation p.R601Q 0.24 deleterious(0.04) benign(0.13) TCGA-AZ-6601-01 3 53842682 53842682 G A CACNA1D Missense_Mutation p.R1939Q 0.16 deleterious_low_confidence(0.04) benign(0.034) TCGA-AZ-6601-01 3 55514825 55514825 G A WNT5A Missense_Mutation p.A43V 0.13 tolerated(0.05) benign(0.022) TCGA-AZ-6601-01 3 56807810 56807810 C T ARHGEF3 Missense_Mutation p.R76Q 0.23 deleterious(0.02) possibly_damaging(0.899) TCGA-AZ-6601-01 3 57107683 57107683 G T SPATA12 5'UTR 0.21 TCGA-AZ-6601-01 3 58186737 58186737 C T DNASE1L3 Missense_Mutation p.R178H 0.16 tolerated(0.23) benign(0.077) TCGA-AZ-6601-01 3 58503042 58503042 T C ACOX2 Missense_Mutation p.I581V 0.10 deleterious(0.04) benign(0.042) TCGA-AZ-6601-01 3 58520857 58520857 C T ACOX2 5'UTR 0.26 TCGA-AZ-6601-01 3 64085313 64085313 G A PRICKLE2 Missense_Mutation p.A650V 0.09 tolerated(0.33) benign(0.022) TCGA-AZ-6601-01 3 64580043 64580043 C T ADAMTS9 Missense_Mutation p.R1416Q 0.27 tolerated(0.63) benign(0.009) TCGA-AZ-6601-01 3 66431156 66431156 G A LRIG1 Missense_Mutation p.P967L 0.20 tolerated(0.17) benign(0.003) TCGA-AZ-6601-01 3 71026835 71026835 C T FOXP1 Missense_Mutation p.E465K 0.17 deleterious(0) possibly_damaging(0.621) TCGA-AZ-6601-01 3 7782192 7782192 C T GRM7 3'UTR 0.26 TCGA-AZ-6601-01 3 78666908 78666908 G A ROBO1 Missense_Mutation p.R1387C 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-AZ-6601-01 3 8590554 8590554 G A LMCD1 Missense_Mutation p.G230S 0.23 tolerated(0.1) probably_damaging(1) TCGA-AZ-6601-01 3 9005082 9005082 G T RAD18 5'UTR 0.28 TCGA-AZ-6601-01 3 93611833 93611833 G A PROS1 Missense_Mutation p.H367Y 0.22 tolerated(1) benign(0.008) TCGA-AZ-6601-01 3 93624735 93624735 G A PROS1 Missense_Mutation p.S165L 0.19 tolerated(0.3) benign(0.001) TCGA-AZ-6601-01 3 96706805 96706805 C T EPHA6 Missense_Mutation p.T361I 0.17 tolerated(0.1) benign(0.002) TCGA-AZ-6601-01 3 98530162 98530162 A G DCBLD2 Silent p.G484G 0.28 TCGA-AZ-6601-01 3 99514883 99514883 G T COL8A1 Missense_Mutation p.R713L 0.25 tolerated(0.1) possibly_damaging(0.908) TCGA-AZ-6601-01 3 99515039 99515040 - A COL8A1 3'UTR 0.15 TCGA-AZ-6601-01 3 9991568 9991568 C T PRRT3 Missense_Mutation p.A78T 0.22 tolerated_low_confidence(0.47) benign(0.009) TCGA-AZ-6601-01 4 1018754 1018754 C T FGFRL1 Silent p.P378P 0.27 TCGA-AZ-6601-01 4 102030169 102030169 G A PPP3CA Missense_Mutation p.A109V 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-6601-01 4 102791756 102791756 G T BANK1 Missense_Mutation p.K286N 0.15 deleterious(0.01) benign(0.108) TCGA-AZ-6601-01 4 10492140 10492140 C T CLNK Missense_Mutation p.C413Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 4 106162533 106162533 C A TET2 Silent p.T1149T 0.11 TCGA-AZ-6601-01 4 110585493 110585493 A G CCDC109B Missense_Mutation p.N132D 0.29 tolerated(0.54) benign(0.034) TCGA-AZ-6601-01 4 110612142 110612142 A G CASP6 Silent p.D169D 0.21 TCGA-AZ-6601-01 4 111397717 111397717 C T ENPEP Silent p.G49G 0.29 TCGA-AZ-6601-01 4 113541201 113541201 C T C4orf21 Missense_Mutation p.R103Q 0.17 tolerated(0.29) benign(0.005) TCGA-AZ-6601-01 4 119161848 119161848 A G NDST3 Missense_Mutation p.Q763R 0.25 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 4 119459093 119459093 G A CEP170P1 RNA 0.16 TCGA-AZ-6601-01 4 119948055 119948055 C T SYNPO2 Silent p.R177R 0.11 TCGA-AZ-6601-01 4 120214274 120214274 T C USP53 Missense_Mutation p.C1044R 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-6601-01 4 122301486 122301486 T C QRFPR Missense_Mutation p.N106S 0.08 deleterious(0.04) benign(0.102) TCGA-AZ-6601-01 4 122301705 122301705 G A QRFPR Missense_Mutation p.P33L 0.30 deleterious(0.02) possibly_damaging(0.606) TCGA-AZ-6601-01 4 122853893 122853893 G A TRPC3 Missense_Mutation p.R174C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 4 125590833 125590833 G A ANKRD50 Missense_Mutation p.T1200M 0.19 deleterious(0.01) possibly_damaging(0.893) TCGA-AZ-6601-01 4 126239583 126239583 G A FAT4 Missense_Mutation p.A673T 0.27 benign(0.012) TCGA-AZ-6601-01 4 126242602 126242602 G A FAT4 Missense_Mutation p.R1679H 0.19 probably_damaging(0.947) TCGA-AZ-6601-01 4 128554238 128554238 C T INTU Missense_Mutation p.P17S 0.20 tolerated_low_confidence(0.22) benign(0.006) TCGA-AZ-6601-01 4 128722301 128722302 - T HSPA4L Frame_Shift_Ins p.T149Yfs*2 0.17 TCGA-AZ-6601-01 4 139994705 139994705 G A ELF2 Silent p.H85H 0.12 TCGA-AZ-6601-01 4 141543415 141543416 - T TBC1D9 Frame_Shift_Ins p.N1245Kfs*14 0.17 TCGA-AZ-6601-01 4 144459999 144459999 C T SMARCA5 Missense_Mutation p.R560C 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 4 144466729 144466729 G T SMARCA5 Missense_Mutation p.G797V 0.20 deleterious(0) benign(0.345) TCGA-AZ-6601-01 4 153332916 153332916 G A FBXW7 Nonsense_Mutation p.R14* 0.18 TCGA-AZ-6601-01 4 155411172 155411172 C A DCHS2 Missense_Mutation p.G446C 0.16 deleterious(0.01) benign(0.054) TCGA-AZ-6601-01 4 15780103 15780103 C T CD38 Silent p.A22A 0.23 TCGA-AZ-6601-01 4 158233938 158233938 C A GRIA2 Silent p.R193R 0.20 TCGA-AZ-6601-01 4 158253976 158253976 T C GRIA2 Silent p.T296T 0.18 TCGA-AZ-6601-01 4 160243519 160243519 C T RAPGEF2 Missense_Mutation p.H131Y 0.20 deleterious(0) possibly_damaging(0.771) TCGA-AZ-6601-01 4 162307403 162307403 G A FSTL5 Silent p.D680D 0.15 TCGA-AZ-6601-01 4 166239069 166239069 C T KLHL2 Silent p.T571T 0.10 TCGA-AZ-6601-01 4 169815773 169815773 C T PALLD Missense_Mutation p.A715V 0.50 deleterious(0.04) possibly_damaging(0.889) TCGA-AZ-6601-01 4 173873249 173873249 G A GALNTL6 Missense_Mutation p.R404Q 0.21 deleterious(0.04) probably_damaging(0.936) TCGA-AZ-6601-01 4 17638188 17638188 C T FAM184B Missense_Mutation p.R916H 0.18 deleterious(0.01) probably_damaging(0.927) TCGA-AZ-6601-01 4 17659985 17659985 A G FAM184B Silent p.H675H 0.24 TCGA-AZ-6601-01 4 176622743 176622743 T C GPM6A Silent p.T71T 0.17 TCGA-AZ-6601-01 4 1817511 1817511 G A LETM1 Silent p.V650V 0.25 TCGA-AZ-6601-01 4 183659552 183659552 A G TENM3 Splice_Site p.X1079_splice 0.08 TCGA-AZ-6601-01 4 183696191 183696191 C T TENM3 Missense_Mutation p.T1730M 0.10 tolerated(0.05) probably_damaging(0.93) TCGA-AZ-6601-01 4 183958853 183958853 C T FAM92A1P2 RNA 0.38 TCGA-AZ-6601-01 4 186384164 186384164 G T CCDC110 Missense_Mutation p.P52Q 0.21 deleterious(0.01) benign(0.351) TCGA-AZ-6601-01 4 189012823 189012823 A T TRIML2 Missense_Mutation p.L290M 0.24 tolerated(0.12) probably_damaging(0.997) TCGA-AZ-6601-01 4 20852258 20852258 C T KCNIP4 Missense_Mutation p.V66I 0.30 tolerated(0.07) benign(0) TCGA-AZ-6601-01 4 22517214 22517214 C T GPR125 Missense_Mutation p.C65Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-AZ-6601-01 4 24578065 24578065 G A DHX15 Missense_Mutation p.A103V 0.16 tolerated(0.15) benign(0.002) TCGA-AZ-6601-01 4 25162103 25162104 - A SEPSECS 5'Flank 0.16 TCGA-AZ-6601-01 4 25677824 25677824 G A SLC34A2 Missense_Mutation p.R509H 0.28 deleterious(0) probably_damaging(0.994) TCGA-AZ-6601-01 4 2906672 2906672 T C ADD1 Missense_Mutation p.L448P 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-AZ-6601-01 4 3208331 3208331 G A HTT Missense_Mutation p.V1943I 0.26 benign(0.003) TCGA-AZ-6601-01 4 3441531 3441531 G A RGS12 3'UTR 0.20 TCGA-AZ-6601-01 4 38690557 38690557 C T KLF3 Missense_Mutation p.R137W 0.24 deleterious(0.02) possibly_damaging(0.853) TCGA-AZ-6601-01 4 39088292 39088292 G A KLHL5 Missense_Mutation p.R399Q 0.22 tolerated(1) benign(0.022) TCGA-AZ-6601-01 4 39114803 39114803 G A KLHL5 Missense_Mutation p.D664N 0.34 deleterious(0.01) probably_damaging(1) TCGA-AZ-6601-01 4 39322991 39322991 G A RFC1 Nonsense_Mutation p.R242* 0.24 TCGA-AZ-6601-01 4 39367900 39367900 G A RFC1 5'UTR 0.15 TCGA-AZ-6601-01 4 39448176 39448176 C T KLB Silent p.G610G 0.10 TCGA-AZ-6601-01 4 40245027 40245027 C T RHOH Silent p.C7C 0.20 TCGA-AZ-6601-01 4 41983837 41983837 G A DCAF4L1 Missense_Mutation p.E10K 0.25 deleterious(0.05) unknown(0) TCGA-AZ-6601-01 4 42145503 42145503 C A BEND4 Missense_Mutation p.E332D 0.26 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-AZ-6601-01 4 46305494 46305494 G T GABRA2 Missense_Mutation p.P280H 0.19 deleterious(0) probably_damaging(0.994) TCGA-AZ-6601-01 4 48036974 48036974 G A NIPAL1 Missense_Mutation p.G180R 0.21 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 4 53494246 53494246 C T USP46 Missense_Mutation p.A68T 0.16 tolerated(0.18) benign(0.009) TCGA-AZ-6601-01 4 54966914 54966914 C A GSX2 Missense_Mutation p.H135N 0.24 deleterious(0.05) possibly_damaging(0.775) TCGA-AZ-6601-01 4 55593586 55593586 C A KIT Missense_Mutation p.P551H 0.25 deleterious(0.01) benign(0.157) TCGA-AZ-6601-01 4 55604659 55604659 G A KIT Missense_Mutation p.R956Q 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-AZ-6601-01 4 5578130 5578130 C T EVC2 Missense_Mutation p.A1037T 0.28 tolerated(0.23) benign(0.063) TCGA-AZ-6601-01 4 57179442 57179442 T C KIAA1211 Missense_Mutation p.I145T 0.18 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 4 57181469 57181469 G A KIAA1211 Missense_Mutation p.A601T 0.11 deleterious(0) possibly_damaging(0.695) TCGA-AZ-6601-01 4 57514947 57514947 C T HOPX 3'UTR 0.31 TCGA-AZ-6601-01 4 57796972 57796972 G A REST Missense_Mutation p.E650K 0.15 tolerated(0.53) benign(0) TCGA-AZ-6601-01 4 5803747 5803747 C T EVC Missense_Mutation p.A792V 0.24 tolerated(0.26) benign(0.01) TCGA-AZ-6601-01 4 6290799 6290799 C T WFS1 Missense_Mutation p.A134V 0.25 deleterious(0.02) benign(0.141) TCGA-AZ-6601-01 4 65180465 65180465 T C TECRL Missense_Mutation p.Y151C 0.22 deleterious(0.05) probably_damaging(0.999) TCGA-AZ-6601-01 4 6606956 6606956 C T MAN2B2 Missense_Mutation p.R572C 0.28 tolerated(0.1) benign(0.022) TCGA-AZ-6601-01 4 66467586 66467586 A G EPHA5 Missense_Mutation p.V228A 0.13 deleterious(0.04) probably_damaging(0.981) TCGA-AZ-6601-01 4 68543393 68543393 T C UBA6 Missense_Mutation p.H134R 0.26 tolerated(0.41) benign(0.027) TCGA-AZ-6601-01 4 69188541 69188541 G A YTHDC1 Silent p.H509H 0.24 TCGA-AZ-6601-01 4 71388516 71388516 G A AMTN Silent p.P33P 0.27 TCGA-AZ-6601-01 4 71672386 71672386 C T RUFY3 3'UTR 0.16 TCGA-AZ-6601-01 4 72316952 72316952 C T SLC4A4 Missense_Mutation p.T419M 0.27 tolerated(0.24) benign(0.007) TCGA-AZ-6601-01 4 72412159 72412159 G A SLC4A4 Silent p.T845T 0.22 TCGA-AZ-6601-01 4 73414536 73414536 G A ADAMTS3 Missense_Mutation p.R55C 0.20 deleterious(0) possibly_damaging(0.832) TCGA-AZ-6601-01 4 73923943 73923943 C T COX18 Missense_Mutation p.R297H 0.22 tolerated(0.13) benign(0.094) TCGA-AZ-6601-01 4 73944447 73944447 C T ANKRD17 Silent p.T2440T 0.28 TCGA-AZ-6601-01 4 74963466 74963466 C A CXCL2 3'UTR 0.28 TCGA-AZ-6601-01 4 7640086 7640086 G A SORCS2 Missense_Mutation p.R227Q 0.21 deleterious(0.03) possibly_damaging(0.883) TCGA-AZ-6601-01 4 7666085 7666085 C T SORCS2 Missense_Mutation p.R320W 0.08 tolerated(0.08) benign(0.02) TCGA-AZ-6601-01 4 77987421 77987421 C T CCNI Missense_Mutation p.R32Q 0.22 tolerated(0.29) benign(0.004) TCGA-AZ-6601-01 4 79291103 79291103 A C FRAS1 Missense_Mutation p.Q945P 0.19 probably_damaging(0.944) TCGA-AZ-6601-01 4 84519856 84519856 A C AGPAT9 Silent p.G395G 0.17 TCGA-AZ-6601-01 4 85593954 85593954 C - WDFY3 3'UTR 0.25 TCGA-AZ-6601-01 4 87732226 87732226 A G PTPN13 Missense_Mutation p.M2448V 0.22 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 4 88011154 88011154 C T AFF1 Missense_Mutation p.P375S 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 4 89618444 89618444 C G NAP1L5 Missense_Mutation p.E154D 0.23 tolerated(0.49) unknown(0) TCGA-AZ-6601-01 4 89668088 89668088 G A FAM13A Missense_Mutation p.R821W 0.21 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 4 95200149 95200149 G T SMARCAD1 Missense_Mutation p.R791L 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 4 983106 983106 G A SLC26A1 Missense_Mutation p.R541C 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 5 10411625 10411625 C T MARCH6 Silent p.R624R 0.18 TCGA-AZ-6601-01 5 1076885 1076885 G A SLC12A7 Silent p.L558L 0.10 TCGA-AZ-6601-01 5 109110494 109110494 G A MAN2A1 Missense_Mutation p.R401Q 0.32 tolerated(0.64) benign(0.003) TCGA-AZ-6601-01 5 111530332 111530332 G A EPB41L4A Missense_Mutation p.R479C 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 5 112128191 112128191 C T APC Nonsense_Mutation p.R232* 0.24 TCGA-AZ-6601-01 5 112151204 112151204 C T APC Nonsense_Mutation p.R283* 0.23 TCGA-AZ-6601-01 5 112479000 112479000 G A MCC Missense_Mutation p.R267C 0.29 deleterious(0) benign(0.011) TCGA-AZ-6601-01 5 112769903 112769903 C T TSSK1B Missense_Mutation p.G212S 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-AZ-6601-01 5 114547926 114547926 G A PGGT1B 3'UTR 0.29 TCGA-AZ-6601-01 5 121413105 121413105 C T LOX Silent p.R192R 0.09 TCGA-AZ-6601-01 5 122337799 122337799 C T SNX24 Intron 0.28 TCGA-AZ-6601-01 5 125820205 125820205 T G GRAMD3 Missense_Mutation p.L335R 0.34 tolerated(0.21) benign(0.275) TCGA-AZ-6601-01 5 127503469 127503469 G A SLC12A2 Missense_Mutation p.R878H 0.24 deleterious(0.02) benign(0.032) TCGA-AZ-6601-01 5 127645064 127645064 C A FBN2 Missense_Mutation p.S1743I 0.19 tolerated(0.05) benign(0.017) TCGA-AZ-6601-01 5 127686612 127686612 G A FBN2 Silent p.C920C 0.15 TCGA-AZ-6601-01 5 131528656 131528656 G A P4HA2 3'UTR 0.33 TCGA-AZ-6601-01 5 132150644 132150644 G A SOWAHA Missense_Mutation p.R444Q 0.12 tolerated(0.31) benign(0.009) TCGA-AZ-6601-01 5 132150840 132150840 G A SOWAHA Silent p.S509S 0.25 TCGA-AZ-6601-01 5 134364969 134364969 G A PITX1 Missense_Mutation p.R149C 0.24 deleterious(0) probably_damaging(0.991) TCGA-AZ-6601-01 5 137517377 137517377 G A KIF20A Missense_Mutation p.R112Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 5 13776575 13776575 G A DNAH5 Nonsense_Mutation p.R3116* 0.17 TCGA-AZ-6601-01 5 13830278 13830278 G A DNAH5 Missense_Mutation p.R2036C 0.23 possibly_damaging(0.898) TCGA-AZ-6601-01 5 139928918 139928918 C A EIF4EBP3 3'UTR 0.15 TCGA-AZ-6601-01 5 140182696 140182696 C T PCDHA3 Silent p.D638D 0.21 TCGA-AZ-6601-01 5 140203736 140203736 C A PCDHA5 Intron 0.22 TCGA-AZ-6601-01 5 140209289 140209289 G A PCDHA6 Missense_Mutation p.R538H 0.31 deleterious_low_confidence(0.01) benign(0.209) TCGA-AZ-6601-01 5 140214139 140214139 G A PCDHA7 Silent p.A57A 0.34 TCGA-AZ-6601-01 5 140229574 140229574 G A PCDHA9 Silent p.R498R 0.20 TCGA-AZ-6601-01 5 140237164 140237164 G A PCDHA10 Missense_Mutation p.A511T 0.24 deleterious_low_confidence(0.01) benign(0.179) TCGA-AZ-6601-01 5 140517382 140517382 G A PCDHB5 Missense_Mutation p.R789Q 0.24 tolerated_low_confidence(0.25) benign(0.021) TCGA-AZ-6601-01 5 140580944 140580944 G A PCDHB11 Missense_Mutation p.A533T 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AZ-6601-01 5 140589966 140589966 C T PCDHB12 Missense_Mutation p.P496L 0.30 deleterious_low_confidence(0.05) benign(0.033) TCGA-AZ-6601-01 5 140683520 140683520 G A SLC25A2 5'UTR 0.25 TCGA-AZ-6601-01 5 140734884 140734884 G T PCDHGA4 Missense_Mutation p.Q39H 0.25 deleterious_low_confidence(0) benign(0.146) TCGA-AZ-6601-01 5 140751914 140751914 G A PCDHGB3 Silent p.Q651Q 0.26 TCGA-AZ-6601-01 5 140755560 140755560 C T PCDHGA6 Missense_Mutation p.A637V 0.32 deleterious_low_confidence(0.02) benign(0.382) TCGA-AZ-6601-01 5 140768842 140768842 C T PCDHGB4 Missense_Mutation p.P464L 0.22 tolerated(0.1) benign(0.179) TCGA-AZ-6601-01 5 140782907 140782907 G A PCDHGA9 Missense_Mutation p.A130T 0.18 tolerated_low_confidence(0.22) benign(0.064) TCGA-AZ-6601-01 5 140812609 140812609 G T PCDHGA12 Silent p.T761T 0.26 TCGA-AZ-6601-01 5 140866346 140866346 C T PCDHGC4 Nonsense_Mutation p.Q536* 0.14 TCGA-AZ-6601-01 5 141307750 141307750 G T KIAA0141 Missense_Mutation p.R100M 0.25 deleterious(0) probably_damaging(0.94) TCGA-AZ-6601-01 5 141357922 141357922 G A RNF14 Missense_Mutation p.V121M 0.24 deleterious(0.02) possibly_damaging(0.564) TCGA-AZ-6601-01 5 143853421 143853421 G A KCTD16 Missense_Mutation p.R344H 0.19 tolerated(0.09) probably_damaging(0.996) TCGA-AZ-6601-01 5 145529187 145529187 C T LARS Missense_Mutation p.A501T 0.24 tolerated(0.62) benign(0.001) TCGA-AZ-6601-01 5 145718650 145718650 G A POU4F3 5'UTR 0.25 TCGA-AZ-6601-01 5 145890103 145890103 G T TCERG1 Missense_Mutation p.E1065D 0.20 tolerated(0.31) unknown(0) TCGA-AZ-6601-01 5 14610368 14610368 C T FAM105A Missense_Mutation p.P339L 0.30 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 5 148206737 148206737 C T ADRB2 Silent p.L115L 0.07 TCGA-AZ-6601-01 5 148682059 148682059 G A AFAP1L1 Missense_Mutation p.G136S 0.20 deleterious(0) possibly_damaging(0.905) TCGA-AZ-6601-01 5 148712357 148712357 C T AFAP1L1 Missense_Mutation p.A692V 0.21 deleterious(0) benign(0.119) TCGA-AZ-6601-01 5 149213062 149213062 G A PPARGC1B Missense_Mutation p.V476M 0.23 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 5 149361244 149361244 C T SLC26A2 Silent p.N696N 0.44 TCGA-AZ-6601-01 5 149433562 149433562 C T CSF1R 3'UTR 0.22 TCGA-AZ-6601-01 5 149509401 149509401 C T PDGFRB Missense_Mutation p.V500M 0.20 deleterious(0.03) benign(0.426) TCGA-AZ-6601-01 5 149516594 149516594 G A PDGFRB Missense_Mutation p.A6V 0.11 tolerated_low_confidence(0.91) benign(0) TCGA-AZ-6601-01 5 150029163 150029163 C T SYNPO Silent p.P686P 0.20 TCGA-AZ-6601-01 5 150444627 150444627 G A TNIP1 Silent p.Y10Y 0.15 TCGA-AZ-6601-01 5 150581142 150581142 C T CCDC69 Splice_Site p.X77_splice 0.28 TCGA-AZ-6601-01 5 151169956 151169956 C T G3BP1 Silent p.Y56Y 0.14 TCGA-AZ-6601-01 5 153077660 153077661 - G GRIA1 Frame_Shift_Ins p.D410Rfs*2 0.12 TCGA-AZ-6601-01 5 154272043 154272043 C T GEMIN5 Missense_Mutation p.E1222K 0.23 tolerated(0.15) benign(0.006) TCGA-AZ-6601-01 5 156766127 156766127 G A CYFIP2 Silent p.T790T 0.13 TCGA-AZ-6601-01 5 158603693 158603693 T C RNF145 Missense_Mutation p.N220D 0.14 deleterious(0.04) probably_damaging(0.964) TCGA-AZ-6601-01 5 159776084 159776084 C - C1QTNF2 3'UTR 0.24 TCGA-AZ-6601-01 5 160753376 160753376 G A GABRB2 Missense_Mutation p.T397M 0.25 tolerated(0.13) benign(0.339) TCGA-AZ-6601-01 5 167891847 167891847 G A WWC1 Silent p.S1016S 0.23 TCGA-AZ-6601-01 5 168119695 168119695 G A SLIT3 Silent p.C1031C 0.15 TCGA-AZ-6601-01 5 168199865 168199865 G A SLIT3 Silent p.S460S 0.25 TCGA-AZ-6601-01 5 169680142 169680142 G T LCP2 Missense_Mutation p.P409Q 0.24 tolerated(0.23) benign(0.016) TCGA-AZ-6601-01 5 170863127 170863127 C T FGF18 Missense_Mutation p.R34C 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-AZ-6601-01 5 171482608 171482608 C T STK10 Missense_Mutation p.R837H 0.26 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 5 171773230 171773230 C T SH3PXD2B Silent p.P366P 0.21 TCGA-AZ-6601-01 5 175751713 175751713 C T SIMC1 Silent p.A274A 0.29 TCGA-AZ-6601-01 5 175816444 175816444 G C HIGD2A Silent p.T89T 0.21 TCGA-AZ-6601-01 5 175958565 175958565 G A RNF44 Missense_Mutation p.P122S 0.19 tolerated(0.8) benign(0.063) TCGA-AZ-6601-01 5 176018456 176018456 C T CDHR2 Silent p.L1235L 0.17 TCGA-AZ-6601-01 5 176332179 176332179 C T UIMC1 3'UTR 0.38 TCGA-AZ-6601-01 5 176707813 176707813 G A NSD1 Missense_Mutation p.R1957Q 0.23 tolerated(0.5) benign(0.111) TCGA-AZ-6601-01 5 176832772 176832772 G A F12 Nonsense_Mutation p.R84* 0.25 TCGA-AZ-6601-01 5 176940721 176940721 C T DDX41 Missense_Mutation p.E355K 0.27 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 5 177031409 177031409 C T B4GALT7 Missense_Mutation p.R94C 0.24 deleterious(0) probably_damaging(0.939) TCGA-AZ-6601-01 5 177158570 177158570 T G FAM153A Missense_Mutation p.S211R 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.504) TCGA-AZ-6601-01 5 177422915 177422915 C T PROP1 Missense_Mutation p.R7H 0.11 tolerated_low_confidence(0.08) benign(0.092) TCGA-AZ-6601-01 5 177669107 177669107 C T COL23A1 Missense_Mutation p.R506Q 0.23 deleterious(0.02) probably_damaging(0.985) TCGA-AZ-6601-01 5 178224590 178224590 G A AACSP1 RNA 0.31 TCGA-AZ-6601-01 5 178559842 178559842 G A ADAMTS2 Silent p.C715C 0.29 TCGA-AZ-6601-01 5 179201274 179201274 T C MAML1 Missense_Mutation p.L816P 0.29 deleterious(0.03) possibly_damaging(0.878) TCGA-AZ-6601-01 5 180049754 180049754 C T FLT4 Missense_Mutation p.R545Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 5 180166897 180166897 C T OR2Y1 Silent p.R54R 0.12 TCGA-AZ-6601-01 5 180219357 180219357 G A MGAT1 Silent p.A205A 0.25 TCGA-AZ-6601-01 5 180278143 180278143 G A ZFP62 Missense_Mutation p.R118C 0.14 tolerated(1) benign(0) TCGA-AZ-6601-01 5 180472471 180472471 C T BTNL9 5'UTR 0.30 TCGA-AZ-6601-01 5 180622126 180622126 C T TRIM7 3'UTR 0.14 TCGA-AZ-6601-01 5 21755819 21755819 A G CDH12 Missense_Mutation p.V589A 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-AZ-6601-01 5 235427 235427 C T SDHA Silent p.G411G 0.11 TCGA-AZ-6601-01 5 314725 314725 C T PDCD6 3'UTR 0.29 TCGA-AZ-6601-01 5 32239119 32239119 G A MTMR12 Silent p.N444N 0.27 TCGA-AZ-6601-01 5 32783042 32783042 G A NPR3 Missense_Mutation p.R445Q 0.24 deleterious(0.03) possibly_damaging(0.535) TCGA-AZ-6601-01 5 3599468 3599468 C A IRX1 Missense_Mutation p.R136S 0.12 deleterious(0) probably_damaging(0.931) TCGA-AZ-6601-01 5 36301482 36301482 G A RANBP3L Missense_Mutation p.P13S 0.23 tolerated_low_confidence(0.11) benign(0.001) TCGA-AZ-6601-01 5 37107748 37107748 C T C5orf42 Missense_Mutation p.V3184M 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 5 40853089 40853089 C A CARD6 Missense_Mutation p.A552D 0.18 deleterious(0) possibly_damaging(0.823) TCGA-AZ-6601-01 5 42719441 42719441 C T GHR Missense_Mutation p.A611V 0.24 deleterious(0.02) possibly_damaging(0.881) TCGA-AZ-6601-01 5 43656752 43656752 T C NNT Intron 0.14 TCGA-AZ-6601-01 5 462366 462366 G A EXOC3 Missense_Mutation p.A533T 0.26 tolerated(0.93) benign(0.003) TCGA-AZ-6601-01 5 481687 481687 T C SLC9A3 Missense_Mutation p.R504G 0.20 deleterious(0) possibly_damaging(0.844) TCGA-AZ-6601-01 5 54572109 54572110 - C DHX29 Frame_Shift_Ins p.I805Nfs*17 0.27 TCGA-AZ-6601-01 5 63256926 63256926 C T HTR1A Silent p.P207P 0.07 TCGA-AZ-6601-01 5 66396319 66396319 C T MAST4 Silent p.D323D 0.21 TCGA-AZ-6601-01 5 66400215 66400215 C T MAST4 Missense_Mutation p.R390C 0.21 probably_damaging(0.984) TCGA-AZ-6601-01 5 66429428 66429428 A G MAST4 Missense_Mutation p.Y727C 0.27 possibly_damaging(0.825) TCGA-AZ-6601-01 5 66462880 66462880 C T MAST4 3'UTR 0.24 TCGA-AZ-6601-01 5 68470783 68470783 A G CCNB1 Missense_Mutation p.Y262C 0.15 deleterious(0) probably_damaging(0.962) TCGA-AZ-6601-01 5 68737375 68737375 A G MARVELD2 Missense_Mutation p.E524G 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 5 72199545 72199545 T - TNPO1 Frame_Shift_Del p.C844Vfs*45 0.24 TCGA-AZ-6601-01 5 74892101 74892101 G T POLK Missense_Mutation p.S528I 0.14 deleterious(0) possibly_damaging(0.617) TCGA-AZ-6601-01 5 75587142 75587142 A G SV2C Missense_Mutation p.T412A 0.11 tolerated(0.09) benign(0.034) TCGA-AZ-6601-01 5 76129503 76129503 C T F2RL1 Silent p.N357N 0.19 TCGA-AZ-6601-01 5 80503167 80503167 G A RASGRF2 Missense_Mutation p.E1024K 0.19 tolerated(0.06) possibly_damaging(0.537) TCGA-AZ-6601-01 5 819693 819693 G A ZDHHC11 Missense_Mutation p.R365C 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-AZ-6601-01 5 86708692 86708692 C T CCNH 5'UTR 0.26 TCGA-AZ-6601-01 5 89820856 89820856 C G LYSMD3 Missense_Mutation p.C84S 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 5 9066705 9066705 G T SEMA5A Silent p.P709P 0.23 TCGA-AZ-6601-01 5 9122900 9122900 G A SEMA5A Missense_Mutation p.T550M 0.25 tolerated(0.1) benign(0.004) TCGA-AZ-6601-01 5 93731990 93731990 C T KIAA0825 Missense_Mutation p.A1038T 0.27 tolerated(0.24) benign(0.057) TCGA-AZ-6601-01 5 95011165 95011165 C T SPATA9 Missense_Mutation p.R110H 0.18 tolerated(0.11) benign(0.007) TCGA-AZ-6601-01 5 95249571 95249571 C T ELL2 Missense_Mutation p.D129N 0.20 deleterious(0) benign(0.122) TCGA-AZ-6601-01 6 100062415 100062415 G A PRDM13 Missense_Mutation p.C635Y 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 6 101215219 101215219 G A ASCC3 Silent p.I466I 0.23 TCGA-AZ-6601-01 6 105232884 105232884 C T HACE1 Missense_Mutation p.C462Y 0.15 deleterious(0.01) possibly_damaging(0.656) TCGA-AZ-6601-01 6 105232918 105232918 G A HACE1 Missense_Mutation p.R451W 0.20 deleterious(0) probably_damaging(0.985) TCGA-AZ-6601-01 6 107955363 107955363 G A SOBP Missense_Mutation p.G439S 0.30 tolerated(0.48) possibly_damaging(0.805) TCGA-AZ-6601-01 6 108492730 108492730 G A NR2E1 Missense_Mutation p.A32T 0.16 deleterious(0) possibly_damaging(0.87) TCGA-AZ-6601-01 6 109274445 109274445 C T ARMC2 Silent p.D602D 0.22 TCGA-AZ-6601-01 6 109765118 109765118 C A SMPD2 3'UTR 0.28 TCGA-AZ-6601-01 6 109954215 109954215 C A AK9 Nonsense_Mutation p.G389* 0.12 TCGA-AZ-6601-01 6 11105344 11105344 C T ERVFRD-1 Missense_Mutation p.S67N 0.21 tolerated(0.08) benign(0) TCGA-AZ-6601-01 6 11306314 11306314 G A NEDD9 5'UTR 0.14 TCGA-AZ-6601-01 6 114378580 114378580 G T HS3ST5 Nonsense_Mutation p.C294* 0.15 TCGA-AZ-6601-01 6 116580108 116580108 G A TSPYL4 5'Flank 0.21 TCGA-AZ-6601-01 6 116720763 116720763 C A DSE Missense_Mutation p.P117H 0.18 deleterious(0) probably_damaging(0.943) TCGA-AZ-6601-01 6 117248420 117248420 G A RFX6 Missense_Mutation p.V706M 0.15 tolerated_low_confidence(0.68) benign(0.007) TCGA-AZ-6601-01 6 117248494 117248494 G A RFX6 Nonsense_Mutation p.W730* 0.10 TCGA-AZ-6601-01 6 117708949 117708949 C T ROS1 Missense_Mutation p.V670M 0.17 tolerated(0.1) benign(0.021) TCGA-AZ-6601-01 6 12123628 12123628 C T HIVEP1 Silent p.D1200D 0.24 TCGA-AZ-6601-01 6 123319162 123319162 G A CLVS2 Silent p.Q80Q 0.22 TCGA-AZ-6601-01 6 129204339 129204339 C T LAMA2 5'Flank 0.39 TCGA-AZ-6601-01 6 129725009 129725009 G A LAMA2 Missense_Mutation p.A1924T 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-6601-01 6 130407360 130407360 G A L3MBTL3 Missense_Mutation p.A495T 0.18 deleterious(0) benign(0.059) TCGA-AZ-6601-01 6 132198164 132198164 G A ENPP1 Missense_Mutation p.G586R 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-AZ-6601-01 6 133014304 133014304 C T VNN1 Missense_Mutation p.V229M 0.12 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 6 13316823 13316823 G A TBC1D7 Missense_Mutation p.R167W 0.15 tolerated(0.06) possibly_damaging(0.728) TCGA-AZ-6601-01 6 135358714 135358714 G A HBS1L Intron 0.06 TCGA-AZ-6601-01 6 138199749 138199749 G A TNFAIP3 Silent p.T389T 0.30 TCGA-AZ-6601-01 6 139487764 139487764 T C HECA Silent p.S205S 0.12 TCGA-AZ-6601-01 6 146755531 146755531 C T GRM1 Silent p.L1062L 0.24 TCGA-AZ-6601-01 6 147085071 147085071 C T ADGB Silent p.S1195S 0.08 TCGA-AZ-6601-01 6 150123530 150123530 C A PCMT1 Intron 0.20 TCGA-AZ-6601-01 6 150387035 150387035 C A ULBP3 Nonsense_Mutation p.G118* 0.10 TCGA-AZ-6601-01 6 150387050 150387050 C T ULBP3 Missense_Mutation p.D113N 0.18 tolerated(0.72) benign(0.023) TCGA-AZ-6601-01 6 151686764 151686764 G A ZBTB2 Silent p.D479D 0.27 TCGA-AZ-6601-01 6 152419956 152419956 G A ESR1 Missense_Mutation p.R548H 0.09 tolerated(0.38) benign(0.006) TCGA-AZ-6601-01 6 152680536 152680536 C A SYNE1 Missense_Mutation p.G3453W 0.07 probably_damaging(0.971) TCGA-AZ-6601-01 6 153293426 153293426 C T FBXO5 Missense_Mutation p.R358Q 0.24 deleterious(0) probably_damaging(0.977) TCGA-AZ-6601-01 6 155577407 155577407 T C TIAM2 Intron 0.15 TCGA-AZ-6601-01 6 157528249 157528249 C T ARID1B Missense_Mutation p.P1992S 0.27 probably_damaging(0.997) TCGA-AZ-6601-01 6 158925041 158925041 G A TULP4 Missense_Mutation p.R1449Q 0.14 deleterious_low_confidence(0.03) benign(0.081) TCGA-AZ-6601-01 6 159084344 159084344 G A SYTL3 Missense_Mutation p.R15H 0.22 deleterious(0) possibly_damaging(0.684) TCGA-AZ-6601-01 6 159403600 159403600 G A RSPH3 Missense_Mutation p.R347C 0.22 tolerated(0.16) benign(0.081) TCGA-AZ-6601-01 6 160240107 160240107 C T PNLDC1 Nonsense_Mutation p.R452* 0.17 TCGA-AZ-6601-01 6 160485519 160485519 C T IGF2R Missense_Mutation p.R1325C 0.13 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 6 161162350 161162350 G A PLG Missense_Mutation p.V676I 0.24 tolerated(1) benign(0) TCGA-AZ-6601-01 6 161469829 161469829 A - MAP3K4 Frame_Shift_Del p.K177Nfs*30 0.12 TCGA-AZ-6601-01 6 163984714 163984714 A G QKI Silent p.S299S 0.14 TCGA-AZ-6601-01 6 166580171 166580171 G T T Missense_Mutation p.P127H 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 6 166862307 166862307 C T RPS6KA2 Missense_Mutation p.D421N 0.22 tolerated(0.05) benign(0.294) TCGA-AZ-6601-01 6 169632275 169632275 G T THBS2 Missense_Mutation p.P651T 0.21 deleterious(0.02) probably_damaging(1) TCGA-AZ-6601-01 6 22570077 22570077 C T HDGFL1 Silent p.S91S 0.25 TCGA-AZ-6601-01 6 24146347 24146347 C T NRSN1 3'UTR 0.17 TCGA-AZ-6601-01 6 26460041 26460041 C T BTN2A1 Missense_Mutation p.H139Y 0.27 tolerated(0.06) benign(0.005) TCGA-AZ-6601-01 6 26598526 26598526 G A ABT1 Missense_Mutation p.E158K 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 6 27880032 27880032 C T OR2B2 Nonsense_Mutation p.W22* 0.26 TCGA-AZ-6601-01 6 28297163 28297163 G A ZSCAN31 Missense_Mutation p.R100W 0.21 deleterious(0) possibly_damaging(0.767) TCGA-AZ-6601-01 6 28501880 28501880 G A GPX5 Missense_Mutation p.R201Q 0.35 tolerated(0.25) benign(0.001) TCGA-AZ-6601-01 6 29580341 29580341 G A GABBR1 Silent p.I539I 0.31 TCGA-AZ-6601-01 6 30038956 30038956 G A RNF39 Missense_Mutation p.R399C 0.27 deleterious(0.01) benign(0.133) TCGA-AZ-6601-01 6 30071428 30071428 G A TRIM31 Missense_Mutation p.A388V 0.16 deleterious_low_confidence(0.02) benign(0.047) TCGA-AZ-6601-01 6 30139772 30139772 C A TRIM15 Silent p.R348R 0.28 TCGA-AZ-6601-01 6 30313121 30313121 C T RPP21 Missense_Mutation p.A35V 0.25 tolerated(0.09) benign(0.386) TCGA-AZ-6601-01 6 30857111 30857111 C T DDR1 Silent p.A107A 0.18 TCGA-AZ-6601-01 6 30881090 30881090 C A GTF2H4 Missense_Mutation p.P381H 0.20 deleterious(0.03) possibly_damaging(0.518) TCGA-AZ-6601-01 6 31105881 31105881 C T PSORS1C2 Silent p.P86P 0.31 TCGA-AZ-6601-01 6 31129541 31129541 C T TCF19 Missense_Mutation p.R186W 0.09 deleterious(0) benign(0.061) TCGA-AZ-6601-01 6 31498581 31498581 A G DDX39B Silent p.P415P 0.21 TCGA-AZ-6601-01 6 31526298 31526298 C T NFKBIL1 Silent p.S352S 0.20 TCGA-AZ-6601-01 6 31603796 31603796 G A PRRC2A Missense_Mutation p.R1865H 0.21 unknown(0) TCGA-AZ-6601-01 6 31639706 31639706 C T CSNK2B-LY6G5B-1181 3'UTR 0.25 TCGA-AZ-6601-01 6 31655422 31655422 C T ABHD16A Missense_Mutation p.V515M 0.25 deleterious(0) possibly_damaging(0.791) TCGA-AZ-6601-01 6 31659669 31659669 C T ABHD16A Missense_Mutation p.R218H 0.15 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 6 31691608 31691608 G A C6orf25 Missense_Mutation p.R85H 0.25 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-AZ-6601-01 6 31750062 31750062 C T VARS Missense_Mutation p.R717Q 0.28 tolerated(0.54) possibly_damaging(0.73) TCGA-AZ-6601-01 6 31752077 31752077 C T VARS Missense_Mutation p.E529K 0.25 deleterious(0.01) benign(0.144) TCGA-AZ-6601-01 6 32006567 32006567 G A CYP21A2 Missense_Mutation p.G91S 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 6 32125447 32125447 G A PPT2 Missense_Mutation p.S198N 0.28 tolerated(0.23) benign(0.097) TCGA-AZ-6601-01 6 32133914 32133914 G A EGFL8 Splice_Site 0.17 TCGA-AZ-6601-01 6 32816545 32816545 G A TAP1 Missense_Mutation p.R544C 0.23 deleterious(0.02) benign(0.361) TCGA-AZ-6601-01 6 33143807 33143807 C T COL11A2 Missense_Mutation p.V666M 0.20 possibly_damaging(0.791) TCGA-AZ-6601-01 6 33162507 33162507 G A RXRB Silent p.I522I 0.27 TCGA-AZ-6601-01 6 33541446 33541446 G A BAK1 3'UTR 0.38 TCGA-AZ-6601-01 6 33630361 33630361 G A ITPR3 Silent p.E256E 0.30 TCGA-AZ-6601-01 6 33647815 33647815 G A ITPR3 Missense_Mutation p.E1377K 0.26 tolerated(0.05) probably_damaging(0.973) TCGA-AZ-6601-01 6 33648391 33648391 C T ITPR3 Silent p.S1470S 0.29 TCGA-AZ-6601-01 6 33652411 33652411 C A ITPR3 Missense_Mutation p.L1695I 0.25 tolerated(0.06) benign(0.118) TCGA-AZ-6601-01 6 33693299 33693299 C T IP6K3 Silent p.S228S 0.24 TCGA-AZ-6601-01 6 34392484 34392484 C T RPS10 Missense_Mutation p.R95H 0.15 tolerated(0.08) benign(0.104) TCGA-AZ-6601-01 6 34499545 34499545 C T PACSIN1 Silent p.D402D 0.23 TCGA-AZ-6601-01 6 35466035 35466035 C A TULP1 3'UTR 0.26 TCGA-AZ-6601-01 6 35477667 35477667 G A TULP1 Missense_Mutation p.R180C 0.07 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-AZ-6601-01 6 35543452 35543453 - G FKBP5 3'UTR 0.24 TCGA-AZ-6601-01 6 35763566 35763566 G A CLPS Missense_Mutation p.A50V 0.24 tolerated(0.17) benign(0.012) TCGA-AZ-6601-01 6 36178237 36178237 C T BRPF3 Missense_Mutation p.P704L 0.27 tolerated(0.65) benign(0.003) TCGA-AZ-6601-01 6 36449446 36449446 C T KCTD20 Nonsense_Mutation p.R256* 0.25 TCGA-AZ-6601-01 6 39843151 39843151 G A DAAM2 Missense_Mutation p.R403H 0.18 tolerated(0.05) probably_damaging(0.983) TCGA-AZ-6601-01 6 39851756 39851756 G A DAAM2 Missense_Mutation p.V622I 0.23 tolerated(1) benign(0.004) TCGA-AZ-6601-01 6 41002534 41002534 G A UNC5CL Missense_Mutation p.R94C 0.28 deleterious(0) possibly_damaging(0.796) TCGA-AZ-6601-01 6 41130800 41130800 G A TREM2 Silent p.L7L 0.08 TCGA-AZ-6601-01 6 42712868 42712875 CAGTTATT - TBCC Frame_Shift_Del p.N313Efs*4 0.19 TCGA-AZ-6601-01 6 42929979 42929979 G A GNMT Missense_Mutation p.G79D 0.22 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 6 42932150 42932150 C T PEX6 Missense_Mutation p.A956T 0.32 tolerated(0.54) benign(0.002) TCGA-AZ-6601-01 6 42993781 42993781 C T RRP36 Missense_Mutation p.R118W 0.20 deleterious(0.04) possibly_damaging(0.494) TCGA-AZ-6601-01 6 43010677 43010677 G A CUL7 Missense_Mutation p.P1254S 0.16 deleterious(0.01) benign(0.387) TCGA-AZ-6601-01 6 44118318 44118318 G A TMEM63B Missense_Mutation p.R542H 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-AZ-6601-01 6 44271022 44271022 C A AARS2 Splice_Site p.X715_splice 0.29 TCGA-AZ-6601-01 6 47847266 47847266 C T PTCHD4 Silent p.T438T 0.20 TCGA-AZ-6601-01 6 49519060 49519060 T C C6orf141 Silent p.T185T 0.20 TCGA-AZ-6601-01 6 50740481 50740481 G A TFAP2D Silent p.A421A 0.12 TCGA-AZ-6601-01 6 52847488 52847488 C T GSTA4 Missense_Mutation p.G144R 0.37 tolerated(0.07) possibly_damaging(0.556) TCGA-AZ-6601-01 6 56031763 56031763 G A COL21A1 Nonsense_Mutation p.R407* 0.25 TCGA-AZ-6601-01 6 73904856 73904856 G A KCNQ5 Missense_Mutation p.E859K 0.23 deleterious_low_confidence(0.03) benign(0.337) TCGA-AZ-6601-01 6 74073636 74073636 G A KHDC3L 3'UTR 0.20 TCGA-AZ-6601-01 6 74348151 74348151 A G SLC17A5 Silent p.L199L 0.19 TCGA-AZ-6601-01 6 7585858 7585858 C T DSP Missense_Mutation p.A2788V 0.20 probably_damaging(0.989) TCGA-AZ-6601-01 6 76072638 76072638 A G FILIP1 Intron 0.15 TCGA-AZ-6601-01 6 78172883 78172883 G A HTR1B Silent p.L80L 0.26 TCGA-AZ-6601-01 6 7880637 7880637 A - BMP6 3'UTR 0.14 TCGA-AZ-6601-01 6 80228526 80228526 G A LCA5 Missense_Mutation p.T29M 0.20 deleterious(0.04) benign(0.094) TCGA-AZ-6601-01 6 83602740 83602740 G A UBE3D 3'UTR 0.10 TCGA-AZ-6601-01 6 86243378 86243378 C A SNX14 Missense_Mutation p.K583N 0.25 tolerated(0.32) benign(0.232) TCGA-AZ-6601-01 6 87966042 87966042 G A ZNF292 Missense_Mutation p.V899M 0.17 tolerated_low_confidence(0.14) benign(0.016) TCGA-AZ-6601-01 6 88126458 88126458 C T C6ORF165 Missense_Mutation p.R182C 0.28 tolerated(0.06) benign(0.015) TCGA-AZ-6601-01 6 88331703 88331703 C T ORC3 Missense_Mutation p.A386V 0.26 tolerated(0.15) benign(0.031) TCGA-AZ-6601-01 6 89890150 89890150 G A GABRR1 Missense_Mutation p.P336L 0.24 deleterious(0) probably_damaging(0.991) TCGA-AZ-6601-01 6 90424431 90424431 G A MDN1 Silent p.S2300S 0.27 TCGA-AZ-6601-01 6 90573650 90573650 G A CASP8AP2 RNA 0.16 TCGA-AZ-6601-01 6 90660035 90660035 G A BACH2 Missense_Mutation p.S597L 0.23 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 6 90660534 90660534 C T BACH2 Missense_Mutation p.V431M 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 6 96658969 96658969 A G FUT9 3'UTR 0.14 TCGA-AZ-6601-01 6 97246404 97246404 G A GPR63 Nonsense_Mutation p.R402* 0.15 TCGA-AZ-6601-01 7 100148023 100148023 G A AGFG2 Missense_Mutation p.C107Y 0.07 deleterious(0.04) probably_damaging(0.975) TCGA-AZ-6601-01 7 100176036 100176036 C T LRCH4 Silent p.P278P 0.15 TCGA-AZ-6601-01 7 100189377 100189377 G A FBXO24 Missense_Mutation p.R175H 0.22 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-AZ-6601-01 7 100225705 100225705 C T TFR2 Missense_Mutation p.A510T 0.10 deleterious(0) probably_damaging(0.937) TCGA-AZ-6601-01 7 100305042 100305042 G A POP7 3'UTR 0.17 TCGA-AZ-6601-01 7 100349752 100349752 C A ZAN Missense_Mutation p.P675H 0.19 benign(0.093) TCGA-AZ-6601-01 7 100421300 100421300 A C EPHB4 Missense_Mutation p.L126R 0.16 tolerated(0.26) benign(0.052) TCGA-AZ-6601-01 7 100459362 100459362 C T SLC12A9 Missense_Mutation p.R514C 0.28 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 7 100488020 100488020 C T ACHE 3'UTR 0.25 TCGA-AZ-6601-01 7 100731293 100731293 C T TRIM56 Missense_Mutation p.R234W 0.26 deleterious(0) possibly_damaging(0.891) TCGA-AZ-6601-01 7 100815236 100815236 G A NAT16 3'UTR 0.23 TCGA-AZ-6601-01 7 100839216 100839216 C T MOGAT3 3'UTR 0.15 TCGA-AZ-6601-01 7 101259565 101259565 C A MYL10 Missense_Mutation p.E156D 0.21 deleterious(0.02) probably_damaging(0.971) TCGA-AZ-6601-01 7 101882763 101882763 G A CUX1 Silent p.A1273A 0.19 TCGA-AZ-6601-01 7 101916711 101916711 C T CUX1 Missense_Mutation p.R442C 0.28 deleterious(0.01) possibly_damaging(0.761) TCGA-AZ-6601-01 7 102040073 102040073 A G PRKRIP1 Missense_Mutation p.Y95C 0.14 deleterious(0.01) possibly_damaging(0.871) TCGA-AZ-6601-01 7 102246333 102246333 G A RASA4 Missense_Mutation p.R134W 0.07 tolerated(0.14) possibly_damaging(0.816) TCGA-AZ-6601-01 7 102604046 102604046 G A FBXL13 Missense_Mutation p.R220C 0.16 deleterious(0.04) benign(0.42) TCGA-AZ-6601-01 7 103018178 103018179 - G SLC26A5 Frame_Shift_Ins p.I619Nfs*9 0.23 TCGA-AZ-6601-01 7 103193929 103193929 C T RELN Silent p.E2017E 0.17 TCGA-AZ-6601-01 7 103252243 103252243 C A RELN Nonsense_Mutation p.G904* 0.15 TCGA-AZ-6601-01 7 103969330 103969330 G A LHFPL3 Missense_Mutation p.A35T 0.22 deleterious(0) possibly_damaging(0.786) TCGA-AZ-6601-01 7 105254934 105254934 T C ATXN7L1 Missense_Mutation p.H616R 0.19 tolerated(1) benign(0.114) TCGA-AZ-6601-01 7 106877109 106877109 G A COG5 Missense_Mutation p.P657L 0.19 tolerated(0.08) benign(0.012) TCGA-AZ-6601-01 7 107353011 107353011 A G SLC26A4 Missense_Mutation p.T755A 0.09 deleterious(0.02) benign(0) TCGA-AZ-6601-01 7 107807386 107807386 T A NRCAM Missense_Mutation p.D1149V 0.22 tolerated(0.4) benign(0.001) TCGA-AZ-6601-01 7 111368570 111368570 G A DOCK4 Silent p.Y1887Y 0.22 TCGA-AZ-6601-01 7 117304885 117304885 T C CFTR Silent p.L1369L 0.15 TCGA-AZ-6601-01 7 117432473 117432473 T C CTTNBP2 Missense_Mutation p.I259M 0.24 tolerated(0.13) possibly_damaging(0.522) TCGA-AZ-6601-01 7 119915274 119915274 C T KCND2 Silent p.A196A 0.18 TCGA-AZ-6601-01 7 120428921 120428921 T A TSPAN12 Nonsense_Mutation p.R215* 0.20 TCGA-AZ-6601-01 7 123302399 123302399 C T LMOD2 Silent p.D253D 0.19 TCGA-AZ-6601-01 7 124387132 124387132 G A GPR37 Missense_Mutation p.T430I 0.24 deleterious(0.01) possibly_damaging(0.678) TCGA-AZ-6601-01 7 127991418 127991418 C T PRRT4 Missense_Mutation p.S731N 0.13 deleterious(0) probably_damaging(0.986) TCGA-AZ-6601-01 7 127999679 127999679 G A PRRT4 Missense_Mutation p.R123W 0.25 tolerated_low_confidence(1) unknown(0) TCGA-AZ-6601-01 7 128038544 128038545 - C IMPDH1 Frame_Shift_Ins p.A333Gfs*7 0.10 TCGA-AZ-6601-01 7 128413843 128413843 C T OPN1SW Missense_Mutation p.V263M 0.23 tolerated(0.18) probably_damaging(0.957) TCGA-AZ-6601-01 7 128487907 128487907 T G FLNC Missense_Mutation p.L1482R 0.19 tolerated(0.32) benign(0.392) TCGA-AZ-6601-01 7 128488685 128488685 G A FLNC Missense_Mutation p.A1551T 0.17 tolerated(0.57) benign(0.013) TCGA-AZ-6601-01 7 128519978 128519978 G A KCP RNA 0.28 TCGA-AZ-6601-01 7 128521719 128521719 G A KCP RNA 0.25 TCGA-AZ-6601-01 7 128694963 128694963 C A TNPO3 5'UTR 0.20 TCGA-AZ-6601-01 7 132174130 132174130 C T PLXNA4 Missense_Mutation p.R431H 0.24 tolerated(0.15) probably_damaging(0.925) TCGA-AZ-6601-01 7 134613554 134613554 C T CALD1 Missense_Mutation p.R41W 0.26 deleterious(0) unknown(0) TCGA-AZ-6601-01 7 135300766 135300766 G T NUP205 Missense_Mutation p.R1138M 0.16 deleterious(0) probably_damaging(0.98) TCGA-AZ-6601-01 7 138437473 138437473 A C ATP6V0A4 Missense_Mutation p.L309R 0.17 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 7 138739994 138739994 C T ZC3HAV1 Missense_Mutation p.R715H 0.12 tolerated(0.44) benign(0.14) TCGA-AZ-6601-01 7 138764331 138764331 G A ZC3HAV1 Silent p.S452S 0.18 TCGA-AZ-6601-01 7 138874184 138874184 C T TTC26 3'UTR 0.29 TCGA-AZ-6601-01 7 139796759 139796759 A G KDM7A Missense_Mutation p.V702A 0.23 tolerated(0.55) benign(0.001) TCGA-AZ-6601-01 7 140373166 140373166 C T ADCK2 Silent p.C12C 0.23 TCGA-AZ-6601-01 7 143086971 143086971 C T ZYX Silent p.S505S 0.28 TCGA-AZ-6601-01 7 144097346 144097346 G A NOBOX Missense_Mutation p.R302C 0.18 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 7 1479585 1479585 C T MICALL2 Missense_Mutation p.A648T 0.10 tolerated(0.15) benign(0.051) TCGA-AZ-6601-01 7 148457556 148457556 C T CUL1 Nonsense_Mutation p.Q253* 0.21 TCGA-AZ-6601-01 7 148802440 148802440 G A ZNF425 Missense_Mutation p.R175W 0.21 tolerated(0.18) benign(0) TCGA-AZ-6601-01 7 14880893 14880893 G A DGKB 5'UTR 0.24 TCGA-AZ-6601-01 7 148964022 148964022 C T ZNF783 Missense_Mutation p.T178M 0.17 tolerated(0.5) benign(0.22) TCGA-AZ-6601-01 7 149462423 149462423 C T ZNF467 Missense_Mutation p.A390T 0.17 deleterious(0.04) benign(0.018) TCGA-AZ-6601-01 7 149462836 149462836 C T ZNF467 Missense_Mutation p.R252H 0.19 deleterious(0.03) probably_damaging(0.991) TCGA-AZ-6601-01 7 149473533 149473533 G A ZNF467 5'Flank 0.32 TCGA-AZ-6601-01 7 149520453 149520453 C T SSPO RNA 0.14 TCGA-AZ-6601-01 7 149545102 149545102 C T ZNF862 Missense_Mutation p.R174W 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AZ-6601-01 7 150325356 150325356 G A GIMAP6 Silent p.D110D 0.26 TCGA-AZ-6601-01 7 150732788 150732788 G T ABCB8 Missense_Mutation p.G296C 0.20 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 7 150741208 150741208 G A ABCB8 Missense_Mutation p.R639Q 0.08 deleterious(0.03) possibly_damaging(0.46) TCGA-AZ-6601-01 7 150761824 150761824 G A SLC4A2 Silent p.P143P 0.27 TCGA-AZ-6601-01 7 150767155 150767155 G A SLC4A2 Silent p.L423L 0.30 TCGA-AZ-6601-01 7 150845794 150845794 C A GBX1 Missense_Mutation p.S325I 0.28 deleterious(0) benign(0.028) TCGA-AZ-6601-01 7 150934469 150934469 C T CHPF2 Missense_Mutation p.R341W 0.19 deleterious(0) benign(0.233) TCGA-AZ-6601-01 7 150934603 150934603 C A CHPF2 Silent p.S385S 0.23 TCGA-AZ-6601-01 7 1529274 1529274 G A INTS1 Missense_Mutation p.A737V 0.28 deleterious(0) possibly_damaging(0.517) TCGA-AZ-6601-01 7 157929382 157929382 C T PTPRN2 Missense_Mutation p.G380R 0.24 tolerated(0.9) benign(0.001) TCGA-AZ-6601-01 7 1579862 1579862 C T MAFK Missense_Mutation p.R108C 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-AZ-6601-01 7 158557513 158557513 T C ESYT2 Missense_Mutation p.Q367R 0.28 tolerated(0.12) benign(0.022) TCGA-AZ-6601-01 7 158716409 158716409 G A WDR60 Missense_Mutation p.A748T 0.21 deleterious(0.02) benign(0.008) TCGA-AZ-6601-01 7 158902575 158902575 G A VIPR2 Missense_Mutation p.R63W 0.12 deleterious(0) probably_damaging(0.912) TCGA-AZ-6601-01 7 17349714 17349714 G A AHR Missense_Mutation p.V74I 0.12 deleterious(0) benign(0.324) TCGA-AZ-6601-01 7 1785351 1785351 G A ELFN1 Silent p.T373T 0.24 TCGA-AZ-6601-01 7 18535847 18535847 G A HDAC9 5'Flank 0.19 TCGA-AZ-6601-01 7 21941742 21941742 A G CDCA7L 3'UTR 0.20 TCGA-AZ-6601-01 7 2255615 2255615 C T MAD1L1 Missense_Mutation p.G277R 0.24 tolerated(0.25) possibly_damaging(0.885) TCGA-AZ-6601-01 7 22852590 22852590 T C TOMM7 3'UTR 0.24 TCGA-AZ-6601-01 7 2686645 2686645 G A TTYH3 Silent p.T94T 0.11 TCGA-AZ-6601-01 7 27135357 27135357 C - HOXA1 Frame_Shift_Del p.V59Cfs*55 0.27 TCGA-AZ-6601-01 7 27831636 27831636 T - TAX1BP1 Frame_Shift_Del p.L352* 0.14 TCGA-AZ-6601-01 7 27934919 27934919 C T JAZF1 Missense_Mutation p.R102H 0.15 tolerated(0.11) benign(0.011) TCGA-AZ-6601-01 7 28997132 28997132 G T AC005013.5 5'Flank 0.25 TCGA-AZ-6601-01 7 29980386 29980386 C A SCRN1 Missense_Mutation p.E237D 0.14 tolerated(0.54) benign(0.006) TCGA-AZ-6601-01 7 32798917 32798917 A - RP11-225B17.2 RNA 0.22 TCGA-AZ-6601-01 7 34118582 34118582 G A BMPER Missense_Mutation p.A398T 0.16 tolerated(0.38) benign(0.032) TCGA-AZ-6601-01 7 4259785 4259785 C T SDK1 Missense_Mutation p.R1862C 0.28 tolerated(0.17) possibly_damaging(0.9) TCGA-AZ-6601-01 7 43601418 43601418 C T HECW1 Missense_Mutation p.H1572Y 0.11 deleterious(0) probably_damaging(0.979) TCGA-AZ-6601-01 7 43684968 43684968 A G COA1 Missense_Mutation p.L49S 0.25 tolerated(0.11) benign(0.245) TCGA-AZ-6601-01 7 43917414 43917414 C T URGCP Missense_Mutation p.E550K 0.17 tolerated(1) benign(0.329) TCGA-AZ-6601-01 7 44012274 44012274 C T POLR2J4 RNA 0.07 TCGA-AZ-6601-01 7 44047049 44047049 G A SPDYE1 Missense_Mutation p.R272Q 0.28 tolerated_low_confidence(0.08) possibly_damaging(0.553) TCGA-AZ-6601-01 7 44268815 44268815 G A CAMK2B Intron 0.33 TCGA-AZ-6601-01 7 44575945 44575945 C A NPC1L1 Missense_Mutation p.Q588H 0.12 tolerated(0.55) benign(0.005) TCGA-AZ-6601-01 7 47409078 47409078 C T TNS3 Missense_Mutation p.V389I 0.24 deleterious(0.04) possibly_damaging(0.694) TCGA-AZ-6601-01 7 4794894 4794894 C T FOXK1 Silent p.Y310Y 0.29 TCGA-AZ-6601-01 7 47970900 47970900 C T PKD1L1 Missense_Mutation p.A180T 0.24 tolerated(0.28) benign(0.286) TCGA-AZ-6601-01 7 48634396 48634396 C A ABCA13 Missense_Mutation p.L4911M 0.23 probably_damaging(0.994) TCGA-AZ-6601-01 7 4917757 4917757 G A RADIL Missense_Mutation p.T5M 0.09 deleterious(0) possibly_damaging(0.847) TCGA-AZ-6601-01 7 49842381 49842381 G A VWC2 Silent p.T257T 0.26 TCGA-AZ-6601-01 7 50198781 50198781 G A C7orf72 3'UTR 0.19 TCGA-AZ-6601-01 7 54617843 54617843 C T VSTM2A Missense_Mutation p.P205L 0.17 tolerated(0.08) benign(0.059) TCGA-AZ-6601-01 7 5632893 5632893 G A FSCN1 Missense_Mutation p.R109Q 0.29 tolerated(0.29) benign(0.172) TCGA-AZ-6601-01 7 6012950 6012951 - A PMS2 3'UTR 0.13 TCGA-AZ-6601-01 7 6449615 6449615 C T DAGLB Silent p.A624A 0.31 TCGA-AZ-6601-01 7 6449620 6449620 C T DAGLB Missense_Mutation p.E623K 0.31 deleterious(0.05) probably_damaging(0.997) TCGA-AZ-6601-01 7 6541707 6541707 G A GRID2IP Missense_Mutation p.H1065Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 7 66304891 66304891 G A GTF2IRD1P1 RNA 0.36 TCGA-AZ-6601-01 7 66648179 66648179 G A TYW1 Missense_Mutation p.A589T 0.16 deleterious(0.01) possibly_damaging(0.875) TCGA-AZ-6601-01 7 72409183 72409183 C T POM121 Missense_Mutation p.R179C 0.26 deleterious(0.04) benign(0.06) TCGA-AZ-6601-01 7 72742069 72742069 G A TRIM50 5'UTR 0.36 TCGA-AZ-6601-01 7 72903628 72903628 G A BAZ1B Nonsense_Mutation p.R263* 0.27 TCGA-AZ-6601-01 7 73245853 73245853 C A CLDN4 Missense_Mutation p.L108M 0.21 tolerated(0.12) benign(0.106) TCGA-AZ-6601-01 7 73275502 73275502 G A WBSCR28 5'UTR 0.13 TCGA-AZ-6601-01 7 73929732 73929732 G T GTF2IRD1 Missense_Mutation p.R108L 0.21 tolerated(0.14) benign(0) TCGA-AZ-6601-01 7 74563865 74563865 C T GTF2IRD2B Missense_Mutation p.R538C 0.12 tolerated(0.09) probably_damaging(0.993) TCGA-AZ-6601-01 7 75610447 75610447 G A POR Missense_Mutation p.A200T 0.09 deleterious(0) probably_damaging(0.986) TCGA-AZ-6601-01 7 75659838 75659838 G T STYXL1 Missense_Mutation p.P2T 0.14 tolerated(0.06) benign(0.002) TCGA-AZ-6601-01 7 75915050 75915050 G A SRRM3 3'UTR 0.09 TCGA-AZ-6601-01 7 76058801 76058801 C T ZP3 Intron 0.23 TCGA-AZ-6601-01 7 76247604 76247604 C T POMZP3 Missense_Mutation p.G81S 0.23 tolerated(0.74) possibly_damaging(0.901) TCGA-AZ-6601-01 7 76955547 76955547 C T GSAP Silent p.Q603Q 0.26 TCGA-AZ-6601-01 7 81386513 81386513 G A HGF Silent p.H158H 0.16 TCGA-AZ-6601-01 7 82474647 82474647 A G PCLO Silent p.V4662V 0.14 TCGA-AZ-6601-01 7 82582078 82582078 G A PCLO Missense_Mutation p.R2731C 0.09 unknown(0) TCGA-AZ-6601-01 7 82584623 82584623 T C PCLO Silent p.K1882K 0.20 TCGA-AZ-6601-01 7 87195399 87195399 G A ABCB1 Missense_Mutation p.A230V 0.23 deleterious(0.02) benign(0.257) TCGA-AZ-6601-01 7 88847564 88847564 G T ZNF804B Missense_Mutation p.Q68H 0.16 tolerated(0.12) probably_damaging(0.999) TCGA-AZ-6601-01 7 90528618 90528618 T C CDK14 Missense_Mutation p.C200R 0.36 tolerated(0.38) benign(0.032) TCGA-AZ-6601-01 7 91652292 91652292 C T AKAP9 Nonsense_Mutation p.Q1373* 0.26 TCGA-AZ-6601-01 7 92132469 92132469 A G PEX1 Silent p.S704S 0.17 TCGA-AZ-6601-01 7 92978070 92978070 C T CCDC132 Missense_Mutation p.A752V 0.14 tolerated(0.5) benign(0.309) TCGA-AZ-6601-01 7 93551454 93551454 C A GNG11 Missense_Mutation p.P2H 0.19 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-AZ-6601-01 7 94037658 94037658 G A COL1A2 Missense_Mutation p.G235D 0.19 unknown(0) TCGA-AZ-6601-01 7 97847051 97847051 C T TECPR1 Missense_Mutation p.V1113M 0.29 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 7 98540631 98540631 C T TRRAP Silent p.S1488S 0.30 TCGA-AZ-6601-01 7 98550959 98550959 C G TRRAP Missense_Mutation p.S1871C 0.08 possibly_damaging(0.541) TCGA-AZ-6601-01 7 98574582 98574582 G A TRRAP Silent p.A2749A 0.18 TCGA-AZ-6601-01 7 98608719 98608719 G A TRRAP Silent p.P3647P 0.31 TCGA-AZ-6601-01 7 98991673 98991673 C T ARPC1B Silent p.G337G 0.27 TCGA-AZ-6601-01 7 99144715 99144715 G A FAM200A Missense_Mutation p.P439L 0.20 deleterious(0) benign(0.415) TCGA-AZ-6601-01 7 99691889 99691889 G A MCM7 Silent p.Y585Y 0.23 TCGA-AZ-6601-01 8 104388063 104388063 G A CTHRC1 Missense_Mutation p.R83Q 0.19 tolerated(0.05) probably_damaging(0.964) TCGA-AZ-6601-01 8 104390460 104390460 G A CTHRC1 Missense_Mutation p.R193H 0.22 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 8 10468484 10468484 C A RP1L1 Missense_Mutation p.V1042F 0.21 benign(0.089) TCGA-AZ-6601-01 8 109796319 109796319 G T TMEM74 3'UTR 0.27 TCGA-AZ-6601-01 8 110476614 110476614 T A PKHD1L1 Missense_Mutation p.I2518K 0.15 deleterious(0) probably_damaging(0.986) TCGA-AZ-6601-01 8 110573135 110573135 C A EBAG9 Silent p.A166A 0.15 TCGA-AZ-6601-01 8 113246602 113246602 C T CSMD3 Missense_Mutation p.D3578N 0.21 deleterious(0.02) benign(0.219) TCGA-AZ-6601-01 8 113395812 113395812 T G CSMD3 Missense_Mutation p.R2005S 0.25 deleterious(0.04) benign(0.349) TCGA-AZ-6601-01 8 120613690 120613690 G A ENPP2 Silent p.H282H 0.24 TCGA-AZ-6601-01 8 120758994 120758994 G A TAF2 Missense_Mutation p.A1020V 0.23 tolerated_low_confidence(0.32) benign(0.004) TCGA-AZ-6601-01 8 12586518 12586518 G A LONRF1 Silent p.D634D 0.23 TCGA-AZ-6601-01 8 12950182 12950182 C T DLC1 Missense_Mutation p.V1227M 0.19 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 8 133900320 133900320 C T TG Silent p.S756S 0.20 TCGA-AZ-6601-01 8 134125688 134125688 G A TG Missense_Mutation p.R2532Q 0.12 deleterious(0.04) probably_damaging(0.981) TCGA-AZ-6601-01 8 134128931 134128931 C T TG Silent p.Y2611Y 0.26 TCGA-AZ-6601-01 8 141696772 141696772 G A PTK2 Nonsense_Mutation p.R841* 0.17 TCGA-AZ-6601-01 8 142446084 142446084 G A PTP4A3 3'Flank 0.26 TCGA-AZ-6601-01 8 142459747 142459747 G A SNORD5 3'Flank 0.27 TCGA-AZ-6601-01 8 143866729 143866729 C T LY6D Missense_Mutation p.A99T 0.16 deleterious(0.04) possibly_damaging(0.821) TCGA-AZ-6601-01 8 144102804 144102804 C T LY6E Silent p.S42S 0.18 TCGA-AZ-6601-01 8 144464724 144464724 G A RHPN1 Missense_Mutation p.R639Q 0.31 deleterious(0.04) possibly_damaging(0.681) TCGA-AZ-6601-01 8 144661918 144661918 G A EEF1D 3'UTR 0.33 TCGA-AZ-6601-01 8 144662866 144662866 G T EEF1D Missense_Mutation p.P507Q 0.14 deleterious(0.03) probably_damaging(0.934) TCGA-AZ-6601-01 8 144735818 144735818 G A ZNF623 3'UTR 0.21 TCGA-AZ-6601-01 8 144804020 144804020 C T MAPK15 Silent p.G476G 0.28 TCGA-AZ-6601-01 8 144808662 144808662 G A FAM83H Missense_Mutation p.P990L 0.25 tolerated(0.22) benign(0.003) TCGA-AZ-6601-01 8 144808983 144808983 G A FAM83H Missense_Mutation p.T883M 0.25 tolerated(0.07) possibly_damaging(0.706) TCGA-AZ-6601-01 8 144940302 144940302 G A EPPK1 Missense_Mutation p.R2374C 0.07 possibly_damaging(0.908) TCGA-AZ-6601-01 8 144946612 144946612 G A EPPK1 Silent p.D270D 0.35 TCGA-AZ-6601-01 8 144993273 144993273 G A PLEC Silent p.I3709I 0.25 TCGA-AZ-6601-01 8 144996423 144996423 G A PLEC Silent p.D2659D 0.21 TCGA-AZ-6601-01 8 144997263 144997263 C A PLEC Missense_Mutation p.E2415D 0.19 probably_damaging(0.989) TCGA-AZ-6601-01 8 144997603 144997603 G A PLEC Missense_Mutation p.A2302V 0.23 probably_damaging(0.934) TCGA-AZ-6601-01 8 145139354 145139354 G A GPAA1 Silent p.L284L 0.15 TCGA-AZ-6601-01 8 145255427 145255427 A G MROH1 Missense_Mutation p.H375R 0.14 deleterious(0.01) probably_damaging(0.948) TCGA-AZ-6601-01 8 145649327 145649327 T C VPS28 Silent p.T215T 0.27 TCGA-AZ-6601-01 8 145698668 145698668 G A KIFC2 Silent p.P784P 0.17 TCGA-AZ-6601-01 8 145736255 145736255 G A MFSD3 Missense_Mutation p.R345H 0.29 tolerated(1) benign(0.005) TCGA-AZ-6601-01 8 145740398 145740398 G T RECQL4 Silent p.L514L 0.25 TCGA-AZ-6601-01 8 146032902 146032902 G A ZNF517 Missense_Mutation p.G201S 0.20 deleterious(0.01) probably_damaging(0.953) TCGA-AZ-6601-01 8 146033504 146033504 C T ZNF517 Silent p.C401C 0.19 TCGA-AZ-6601-01 8 17422682 17422682 G A SLC7A2 3'UTR 0.24 TCGA-AZ-6601-01 8 1905108 1905108 C T ARHGEF10 Silent p.D1238D 0.26 TCGA-AZ-6601-01 8 1952458 1952458 G A KBTBD11 3'UTR 0.21 TCGA-AZ-6601-01 8 19796880 19796880 T G LPL 5'UTR 0.12 TCGA-AZ-6601-01 8 20111027 20111027 G T LZTS1 Missense_Mutation p.H139N 0.16 tolerated(0.19) benign(0.126) TCGA-AZ-6601-01 8 21965850 21965850 A G NUDT18 Missense_Mutation p.V57A 0.12 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 8 21978612 21978612 A G HR Missense_Mutation p.M778T 0.15 deleterious(0) possibly_damaging(0.821) TCGA-AZ-6601-01 8 22006461 22006461 C T LGI3 Missense_Mutation p.V287M 0.30 deleterious(0) probably_damaging(0.944) TCGA-AZ-6601-01 8 22037292 22037292 G A BMP1 Missense_Mutation p.R304Q 0.22 tolerated(0.15) benign(0.067) TCGA-AZ-6601-01 8 22267591 22267591 C T SLC39A14 Missense_Mutation p.T197M 0.18 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 8 22477284 22477284 G A CCAR2 3'UTR 0.35 TCGA-AZ-6601-01 8 23002118 23002118 G A TNFRSF10D Nonsense_Mutation p.R267* 0.07 TCGA-AZ-6601-01 8 26492408 26492408 G A DPYSL2 Missense_Mutation p.R268Q 0.24 deleterious(0.01) possibly_damaging(0.883) TCGA-AZ-6601-01 8 27300395 27300395 C T PTK2B Silent p.D681D 0.17 TCGA-AZ-6601-01 8 27650182 27650182 T C ESCO2 Intron 0.22 TCGA-AZ-6601-01 8 27737125 27737125 C A SCARA5 Missense_Mutation p.G438C 0.24 deleterious(0) possibly_damaging(0.854) TCGA-AZ-6601-01 8 27884514 27884514 G A NUGGC Missense_Mutation p.S737L 0.36 tolerated(1) benign(0.006) TCGA-AZ-6601-01 8 28196657 28196657 C T PNOC Missense_Mutation p.A76V 0.15 tolerated(0.07) benign(0.124) TCGA-AZ-6601-01 8 28196673 28196673 G A PNOC Silent p.A81A 0.24 TCGA-AZ-6601-01 8 2830647 2830647 A G CSMD1 Missense_Mutation p.V2972A 0.20 benign(0.003) TCGA-AZ-6601-01 8 28651428 28651428 G A INTS9 Silent p.C311C 0.17 TCGA-AZ-6601-01 8 28704284 28704284 G A INTS9 Missense_Mutation p.P81S 0.35 deleterious(0) probably_damaging(0.997) TCGA-AZ-6601-01 8 2876103 2876103 G A CSMD1 Missense_Mutation p.A2642V 0.22 probably_damaging(0.997) TCGA-AZ-6601-01 8 30469979 30469979 T C GTF2E2 Missense_Mutation p.K129R 0.22 tolerated(0.05) probably_damaging(0.939) TCGA-AZ-6601-01 8 33406262 33406262 C T RNF122 3'UTR 0.22 TCGA-AZ-6601-01 8 36666295 36666295 C T KCNU1 Missense_Mutation p.A239V 0.20 deleterious(0) probably_damaging(0.996) TCGA-AZ-6601-01 8 38250178 38250178 T C LETM2 Missense_Mutation p.Y9H 0.18 tolerated_low_confidence(0.21) benign(0.002) TCGA-AZ-6601-01 8 38279377 38279377 G A FGFR1 Missense_Mutation p.T371M 0.08 deleterious(0) possibly_damaging(0.903) TCGA-AZ-6601-01 8 41522541 41522541 T C ANK1 Intron 0.12 TCGA-AZ-6601-01 8 41554081 41554081 G A ANK1 Silent p.D961D 0.19 TCGA-AZ-6601-01 8 41582070 41582070 C T ANK1 Silent p.T238T 0.25 TCGA-AZ-6601-01 8 41790755 41790755 C T KAT6A Silent p.P1661P 0.25 TCGA-AZ-6601-01 8 42036565 42036565 C T PLAT Silent p.S460S 0.27 TCGA-AZ-6601-01 8 42725237 42725237 G A RNF170 Nonsense_Mutation p.R78* 0.17 TCGA-AZ-6601-01 8 42914282 42914282 G A FNTA Missense_Mutation p.G83D 0.23 tolerated(0.05) possibly_damaging(0.699) TCGA-AZ-6601-01 8 442397 442397 C A TDRP Intron 0.18 TCGA-AZ-6601-01 8 52321785 52321785 G A PXDNL Missense_Mutation p.T800M 0.19 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 8 56863244 56863244 T - LYN Frame_Shift_Del p.F131Sfs*4 0.14 TCGA-AZ-6601-01 8 56912001 56912001 C T LYN Missense_Mutation p.T410M 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 8 57025548 57025548 G A MOS Missense_Mutation p.R332W 0.20 deleterious(0) possibly_damaging(0.75) TCGA-AZ-6601-01 8 57079945 57079945 C T PLAG1 Silent p.T120T 0.22 TCGA-AZ-6601-01 8 59352214 59352214 C T UBXN2B Missense_Mutation p.R186C 0.08 deleterious(0.01) benign(0.115) TCGA-AZ-6601-01 8 59720691 59720691 G C TOX Missense_Mutation p.D510E 0.25 tolerated(0.53) probably_damaging(0.956) TCGA-AZ-6601-01 8 61655506 61655506 G A CHD7 Silent p.Q505Q 0.25 TCGA-AZ-6601-01 8 61763167 61763167 A G CHD7 Silent p.A1840A 0.26 TCGA-AZ-6601-01 8 61764740 61764740 G A CHD7 Missense_Mutation p.R1943Q 0.10 probably_damaging(0.978) TCGA-AZ-6601-01 8 67341316 67341316 G T RRS1 5'UTR 0.29 TCGA-AZ-6601-01 8 71487027 71487027 A - TRAM1 3'UTR 0.23 TCGA-AZ-6601-01 8 73850390 73850390 C T KCNB2 3'UTR 0.28 TCGA-AZ-6601-01 8 74722772 74722772 T G UBE2W Silent p.P141P 0.22 TCGA-AZ-6601-01 8 77618292 77618292 C T ZFHX4 Nonsense_Mutation p.Q657* 0.31 TCGA-AZ-6601-01 8 77765861 77765861 A G ZFHX4 Missense_Mutation p.D2235G 0.20 benign(0.399) TCGA-AZ-6601-01 8 81555357 81555357 G A ZNF704 Missense_Mutation p.P347L 0.20 tolerated(0.14) benign(0.2) TCGA-AZ-6601-01 8 81889067 81889067 C T PAG1 Silent p.P337P 0.27 TCGA-AZ-6601-01 8 8561291 8561291 G A CLDN23 3'UTR 0.07 TCGA-AZ-6601-01 8 8561468 8561468 T C CLDN23 3'UTR 0.22 TCGA-AZ-6601-01 8 85774549 85774549 G A RALYL Silent p.G157G 0.17 TCGA-AZ-6601-01 8 87498831 87498831 C T RMDN1 Missense_Mutation p.R126H 0.26 tolerated(0.05) benign(0.03) TCGA-AZ-6601-01 8 92082590 92082590 G A OTUD6B Missense_Mutation p.R23H 0.23 tolerated_low_confidence(0.67) benign(0) TCGA-AZ-6601-01 8 93017423 93017423 C T RUNX1T1 Missense_Mutation p.A232T 0.22 tolerated(0.46) benign(0.004) TCGA-AZ-6601-01 8 94745545 94745545 T - RBM12B 3'UTR 0.23 TCGA-AZ-6601-01 8 95750673 95750673 C A DPY19L4 Missense_Mutation p.P110H 0.17 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 8 95942705 95942705 T C TP53INP1 3'UTR 0.16 TCGA-AZ-6601-01 8 97321794 97321794 C T PTDSS1 Silent p.Y339Y 0.24 TCGA-AZ-6601-01 8 97506485 97506485 C T SDC2 5'UTR 0.35 TCGA-AZ-6601-01 8 99440363 99440363 C T KCNS2 Silent p.R52R 0.38 TCGA-AZ-6601-01 9 100204021 100204021 G A TDRD7 Missense_Mutation p.R240H 0.19 deleterious(0.04) probably_damaging(0.962) TCGA-AZ-6601-01 9 100367792 100367792 C T TSTD2 Silent p.E362E 0.27 TCGA-AZ-6601-01 9 101056074 101056074 G A GABBR2 Missense_Mutation p.P885S 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-AZ-6601-01 9 101494928 101494928 C T ANKS6 3'UTR 0.25 TCGA-AZ-6601-01 9 102677512 102677512 T - STX17 5'UTR 0.22 TCGA-AZ-6601-01 9 102866832 102866832 C T INVS Missense_Mutation p.A10V 0.32 deleterious(0.05) benign(0.021) TCGA-AZ-6601-01 9 104356919 104356919 C T PPP3R2 Silent p.A98A 0.21 TCGA-AZ-6601-01 9 104449007 104449007 G A GRIN3A Missense_Mutation p.A392V 0.25 deleterious(0.05) possibly_damaging(0.627) TCGA-AZ-6601-01 9 107266605 107266605 C T OR13F1 Missense_Mutation p.P21L 0.16 deleterious(0.01) possibly_damaging(0.804) TCGA-AZ-6601-01 9 111909381 111909381 C T FRRS1L Missense_Mutation p.A189T 0.27 deleterious(0.02) possibly_damaging(0.491) TCGA-AZ-6601-01 9 112166752 112166752 G A PTPN3 Silent p.S643S 0.27 TCGA-AZ-6601-01 9 115936826 115936826 C T FKBP15 Missense_Mutation p.R754H 0.05 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 9 116958255 116958255 C A COL27A1 Missense_Mutation p.P696H 0.20 unknown(0) TCGA-AZ-6601-01 9 117099536 117099536 G A AKNA Missense_Mutation p.P1373L 0.23 deleterious(0.01) possibly_damaging(0.656) TCGA-AZ-6601-01 9 117827110 117827110 A T TNC Nonsense_Mutation p.Y1101* 0.22 TCGA-AZ-6601-01 9 117853172 117853172 T C TNC Silent p.P42P 0.16 TCGA-AZ-6601-01 9 119187733 119187733 C A ASTN2 3'UTR 0.21 TCGA-AZ-6601-01 9 119463161 119463161 T A TRIM32 3'UTR 0.09 TCGA-AZ-6601-01 9 121930339 121930339 C T BRINP1 Missense_Mutation p.A437T 0.17 tolerated(0.22) probably_damaging(0.959) TCGA-AZ-6601-01 9 123367586 123367586 C A MEGF9 Missense_Mutation p.S564I 0.15 deleterious(0) probably_damaging(0.998) TCGA-AZ-6601-01 9 124535421 124535421 C T DAB2IP Silent p.L844L 0.25 TCGA-AZ-6601-01 9 125391195 125391195 A G OR1B1 Missense_Mutation p.F207S 0.16 tolerated(0.31) benign(0.009) TCGA-AZ-6601-01 9 125551928 125551928 G A OR5C1 Silent p.R239R 0.12 TCGA-AZ-6601-01 9 126143708 126143708 G A DENND1A 3'UTR 0.20 TCGA-AZ-6601-01 9 127661695 127661695 G A GOLGA1 Silent p.F408F 0.18 TCGA-AZ-6601-01 9 128092496 128092496 A G GAPVD1 Silent p.S724S 0.25 TCGA-AZ-6601-01 9 129851286 129851286 G A ANGPTL2 Nonsense_Mutation p.R472* 0.24 TCGA-AZ-6601-01 9 130280170 130280170 G A FAM129B Missense_Mutation p.R214C 0.18 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 9 130475026 130475026 G A C9orf117 Silent p.T392T 0.17 TCGA-AZ-6601-01 9 130566821 130566821 C T FPGS Missense_Mutation p.T104M 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 9 131107489 131107489 C T SLC27A4 Missense_Mutation p.R73W 0.24 deleterious(0.01) possibly_damaging(0.556) TCGA-AZ-6601-01 9 131247109 131247109 C T ODF2 Nonsense_Mutation p.R412* 0.31 TCGA-AZ-6601-01 9 131399200 131399200 C T WDR34 Missense_Mutation p.G181D 0.16 deleterious(0) probably_damaging(0.992) TCGA-AZ-6601-01 9 131476355 131476355 C T PKN3 Missense_Mutation p.R423W 0.15 deleterious(0.03) probably_damaging(0.924) TCGA-AZ-6601-01 9 131515777 131515777 C T ZER1 Missense_Mutation p.G138S 0.19 tolerated(0.45) probably_damaging(0.999) TCGA-AZ-6601-01 9 132720816 132720816 C T FNBP1 Missense_Mutation p.R121H 0.21 deleterious(0.03) benign(0.019) TCGA-AZ-6601-01 9 134003861 134003861 C T NUP214 Silent p.F128F 0.06 TCGA-AZ-6601-01 9 134340437 134340437 C T PRRC2B Silent p.P564P 0.26 TCGA-AZ-6601-01 9 135114575 135114575 C T NTNG2 Missense_Mutation p.T380M 0.27 deleterious(0) probably_damaging(0.993) TCGA-AZ-6601-01 9 135139851 135139851 G A SETX Silent p.P2603P 0.26 TCGA-AZ-6601-01 9 135933250 135933250 G A GTF3C5 Silent p.T488T 0.25 TCGA-AZ-6601-01 9 136199413 136199413 G A SURF6 Missense_Mutation p.R193W 0.19 deleterious(0.01) possibly_damaging(0.818) TCGA-AZ-6601-01 9 136210736 136210736 C T MED22 Intron 0.55 TCGA-AZ-6601-01 9 136404996 136404996 G A ADAMTSL2 Splice_Site p.X138_splice 0.18 TCGA-AZ-6601-01 9 136444287 136444287 G A FAM163B Missense_Mutation p.R120C 0.28 deleterious(0) probably_damaging(0.911) TCGA-AZ-6601-01 9 136578196 136578196 G A SARDH Nonsense_Mutation p.R401* 0.17 TCGA-AZ-6601-01 9 136584149 136584149 G A SARDH Missense_Mutation p.R311C 0.29 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 9 136633630 136633630 G A VAV2 Silent p.D841D 0.24 TCGA-AZ-6601-01 9 136918476 136918476 T C BRD3 Missense_Mutation p.M42V 0.08 deleterious(0) benign(0.23) TCGA-AZ-6601-01 9 137804393 137804393 G A FCN1 Silent p.F179F 0.29 TCGA-AZ-6601-01 9 139250972 139250972 C T GPSM1 Silent p.D597D 0.24 TCGA-AZ-6601-01 9 139252590 139252590 G A GPSM1 Missense_Mutation p.R649Q 0.35 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 9 139256519 139256519 G A DNLZ Missense_Mutation p.P161L 0.21 tolerated(0.52) benign(0.007) TCGA-AZ-6601-01 9 139324037 139324037 C T INPP5E 3'UTR 0.34 TCGA-AZ-6601-01 9 139360744 139360744 C T SEC16A Missense_Mutation p.R1367H 0.38 tolerated(0.15) benign(0.095) TCGA-AZ-6601-01 9 139411818 139411818 G A NOTCH1 Silent p.C487C 0.20 TCGA-AZ-6601-01 9 139612127 139612127 G A FAM69B Silent p.S54S 0.33 TCGA-AZ-6601-01 9 139874454 139874454 C A PTGDS Missense_Mutation p.L130M 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-AZ-6601-01 9 139929357 139929357 G T C9orf139 Nonsense_Mutation p.G142* 0.20 TCGA-AZ-6601-01 9 139977185 139977185 G A UAP1L1 3'UTR 0.25 TCGA-AZ-6601-01 9 140139876 140139876 C T FAM166A Silent p.P135P 0.34 TCGA-AZ-6601-01 9 140166605 140166605 C T NELFB Missense_Mutation p.A473V 0.25 tolerated(0.21) benign(0.119) TCGA-AZ-6601-01 9 140174246 140174246 C T TOR4A Missense_Mutation p.R369W 0.31 tolerated(0.08) benign(0.004) TCGA-AZ-6601-01 9 140243954 140243954 G A EXD3 Silent p.A508A 0.31 TCGA-AZ-6601-01 9 140328422 140328422 C T NOXA1 Silent p.A395A 0.22 TCGA-AZ-6601-01 9 140329754 140329754 G A ENTPD8 Missense_Mutation p.R400W 0.21 deleterious(0.01) possibly_damaging(0.849) TCGA-AZ-6601-01 9 140510385 140510385 G A C9orf37 Silent p.H89H 0.24 TCGA-AZ-6601-01 9 140728803 140728803 C T EHMT1 Silent p.D1181D 0.30 TCGA-AZ-6601-01 9 14307186 14307186 G A NFIB Nonsense_Mutation p.R122* 0.27 TCGA-AZ-6601-01 9 14788983 14788983 G T FREM1 Missense_Mutation p.L1371I 0.32 deleterious(0.02) probably_damaging(0.947) TCGA-AZ-6601-01 9 18753299 18753299 G T ADAMTSL1 Missense_Mutation p.W670C 0.19 deleterious(0) probably_damaging(0.968) TCGA-AZ-6601-01 9 18777687 18777687 G - ADAMTSL1 Frame_Shift_Del p.G1155Efs*42 0.13 TCGA-AZ-6601-01 9 18777717 18777717 C G ADAMTSL1 Missense_Mutation p.P1164A 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-AZ-6601-01 9 18826224 18826224 T C ADAMTSL1 Intron 0.24 TCGA-AZ-6601-01 9 2081918 2081918 A G SMARCA2 Missense_Mutation p.I757M 0.10 possibly_damaging(0.639) TCGA-AZ-6601-01 9 20823039 20823039 T C FOCAD Silent p.N615N 0.31 TCGA-AZ-6601-01 9 21409667 21409667 G A IFNA8 Nonsense_Mutation p.W164* 0.10 TCGA-AZ-6601-01 9 215430 215431 - G C9orf66 5'UTR 0.23 TCGA-AZ-6601-01 9 21994385 21994385 C T RP11-149I2.4 5'Flank 0.32 TCGA-AZ-6601-01 9 26905471 26905471 A G PLAA 3'UTR 0.11 TCGA-AZ-6601-01 9 27949849 27949849 T C LINGO2 Missense_Mutation p.Y274C 0.07 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 9 311983 311983 C T DOCK8 Silent p.C186C 0.20 TCGA-AZ-6601-01 9 32418178 32418178 C T ACO1 Nonsense_Mutation p.R153* 0.20 TCGA-AZ-6601-01 9 34371164 34371164 G T KIAA1161 Missense_Mutation p.P559H 0.18 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 9 34372093 34372093 C T KIAA1161 Silent p.V249V 0.29 TCGA-AZ-6601-01 9 35375173 35375173 G A UNC13B Missense_Mutation p.R448H 0.19 deleterious(0) possibly_damaging(0.715) TCGA-AZ-6601-01 9 35381598 35381598 C T UNC13B Missense_Mutation p.R764C 0.25 deleterious(0) benign(0.393) TCGA-AZ-6601-01 9 35705810 35705810 G A TLN1 Silent p.F1850F 0.22 TCGA-AZ-6601-01 9 35706349 35706349 C T TLN1 Silent p.A1735A 0.24 TCGA-AZ-6601-01 9 35744686 35744686 T C GBA2 Missense_Mutation p.Y126C 0.18 deleterious(0.04) benign(0.151) TCGA-AZ-6601-01 9 35807071 35807071 T C NPR2 Silent p.F857F 0.15 TCGA-AZ-6601-01 9 35842500 35842500 C A TMEM8B Missense_Mutation p.P22H 0.15 tolerated(0.06) benign(0.286) TCGA-AZ-6601-01 9 37521630 37521630 G A FBXO10 Silent p.D712D 0.31 TCGA-AZ-6601-01 9 37732326 37732326 G A FRMPD1 Missense_Mutation p.R295H 0.27 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 9 39102658 39102658 G A CNTNAP3 Missense_Mutation p.T864M 0.13 deleterious(0.03) possibly_damaging(0.496) TCGA-AZ-6601-01 9 43853547 43853547 G A CNTNAP3B Missense_Mutation p.G603R 0.13 deleterious(0) probably_damaging(0.914) TCGA-AZ-6601-01 9 5919744 5919744 C T KIAA2026 Silent p.A2084A 0.09 TCGA-AZ-6601-01 9 5968824 5968824 A C KIAA2026 Silent p.A469A 0.25 TCGA-AZ-6601-01 9 6849566 6849566 G A KDM4C Silent p.E165E 0.18 TCGA-AZ-6601-01 9 70490106 70490106 T G CBWD5 5'UTR 0.10 TCGA-AZ-6601-01 9 73205961 73205961 G A TRPM3 Missense_Mutation p.A1058V 0.18 deleterious(0) possibly_damaging(0.852) TCGA-AZ-6601-01 9 732411 732411 A T KANK1 Silent p.S1013S 0.12 TCGA-AZ-6601-01 9 734650 734650 A G KANK1 Intron 0.10 TCGA-AZ-6601-01 9 75404214 75404214 G T TMC1 Missense_Mutation p.G402V 0.18 deleterious(0.03) possibly_damaging(0.689) TCGA-AZ-6601-01 9 75524542 75524544 GAG - ALDH1A1 In_Frame_Del p.S445del 0.15 TCGA-AZ-6601-01 9 79325235 79325235 C T PRUNE2 Missense_Mutation p.R652Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 9 79634611 79634611 C T FOXB2 Missense_Mutation p.P14L 0.24 deleterious(0) unknown(0) TCGA-AZ-6601-01 9 80537144 80537144 G A GNAQ Missense_Mutation p.T85M 0.12 tolerated(0.42) benign(0.022) TCGA-AZ-6601-01 9 82324566 82324566 G A TLE4 Missense_Mutation p.R431H 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6601-01 9 8341268 8341268 G A PTPRD Missense_Mutation p.R1650C 0.36 deleterious(0) probably_damaging(0.987) TCGA-AZ-6601-01 9 86328199 86328199 G A RP11-522I20.3 RNA 0.27 TCGA-AZ-6601-01 9 86618841 86618841 A T RMI1 3'UTR 0.24 TCGA-AZ-6601-01 9 89560888 89560888 G A GAS1 Silent p.Y269Y 0.17 TCGA-AZ-6601-01 9 90501999 90501999 A G SPATA31E1 Missense_Mutation p.Q866R 0.20 tolerated(0.37) possibly_damaging(0.703) TCGA-AZ-6601-01 9 90502975 90502975 A G SPATA31E1 Silent p.P1191P 0.29 TCGA-AZ-6601-01 9 91609688 91609688 C T C9orf47 3'UTR 0.15 TCGA-AZ-6601-01 9 91940838 91940838 G A SECISBP2 Silent p.T153T 0.16 TCGA-AZ-6601-01 9 95179221 95179221 A T OMD Missense_Mutation p.I207N 0.17 tolerated(0.3) benign(0.002) TCGA-AZ-6601-01 9 95482669 95482669 G A BICD2 Silent p.L325L 0.25 TCGA-AZ-6601-01 9 95997220 95997220 G A WNK2 Silent p.A402A 0.25 TCGA-AZ-6601-01 9 96021832 96021832 G A WNK2 Missense_Mutation p.R1001H 0.29 unknown(0) TCGA-AZ-6601-01 9 96435977 96435977 C T PHF2 Missense_Mutation p.A820V 0.10 tolerated(0.39) unknown(0) TCGA-AZ-6601-01 9 97563122 97563122 G A C9orf3 Missense_Mutation p.R401Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-AZ-6601-01 9 99285991 99285991 C T CDC14B Silent p.T321T 0.23 TCGA-AZ-6601-01 X 100364543 100364543 C T CENPI Missense_Mutation p.S149F 0.20 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 X 100652852 100652852 G A GLA Missense_Mutation p.T412I 0.65 deleterious(0) probably_damaging(0.999) TCGA-AZ-6601-01 X 100912397 100912397 C T ARMCX2 Missense_Mutation p.G60R 0.64 deleterious_low_confidence(0) benign(0.142) TCGA-AZ-6601-01 X 101159302 101159302 G A ZMAT1 Silent p.D41D 0.57 TCGA-AZ-6601-01 X 10181749 10181749 G T CLCN4 Missense_Mutation p.L535F 0.30 deleterious(0.02) probably_damaging(0.94) TCGA-AZ-6601-01 X 102842214 102842214 C T TCEAL4 Missense_Mutation p.A204V 0.69 tolerated(0.05) probably_damaging(0.96) TCGA-AZ-6601-01 X 104999170 104999170 G T IL1RAPL2 Splice_Site p.X398_splice 0.58 TCGA-AZ-6601-01 X 105855866 105855866 A C CXorf57 Missense_Mutation p.S186R 0.49 tolerated(0.28) possibly_damaging(0.593) TCGA-AZ-6601-01 X 106885694 106885694 C T PRPS1 Silent p.V168V 0.50 TCGA-AZ-6601-01 X 107976313 107976313 G A IRS4 Missense_Mutation p.R1088C 0.63 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6601-01 X 110956513 110956513 C T ALG13 Silent p.G331G 0.67 TCGA-AZ-6601-01 X 114082659 114082659 T C HTR2C Missense_Mutation p.I148T 0.60 deleterious(0) probably_damaging(1) TCGA-AZ-6601-01 X 114425994 114425994 G A RBMXL3 Missense_Mutation p.G664R 0.63 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-AZ-6601-01 X 115304470 115304470 G A AGTR2 Missense_Mutation p.V313I 0.59 tolerated(1) benign(0.001) TCGA-AZ-6601-01 X 11682942 11682942 C T ARHGAP6 Missense_Mutation p.A3T 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AZ-6601-01 X 117543538 117543538 A - WDR44 Frame_Shift_Del p.N542Mfs*11 0.11 TCGA-AZ-6601-01 X 11783733 11783733 G A MSL3 Silent p.T352T 0.09 TCGA-AZ-6601-01 X 119565257 119565257 A G LAMP2 Intron 0.58 TCGA-AZ-6601-01 X 123220540 123220540 G A STAG2 Missense_Mutation p.R1066Q 0.57 tolerated(0.15) benign(0.375) TCGA-AZ-6601-01 X 129263590 129263590 C T AIFM1 Missense_Mutation p.G595D 0.07 tolerated(0.11) benign(0.126) TCGA-AZ-6601-01 X 134994097 134994097 C T SAGE1 Nonsense_Mutation p.R836* 0.60 TCGA-AZ-6601-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.17 TCGA-AZ-6601-01 X 135405449 135405449 G A GPR112 Missense_Mutation p.E195K 0.49 deleterious(0.05) probably_damaging(0.941) TCGA-AZ-6601-01 X 135957150 135957150 C T RBMX Intron 0.71 TCGA-AZ-6601-01 X 136651151 136651151 C T ZIC3 Missense_Mutation p.S384L 0.16 deleterious(0) probably_damaging(0.983) TCGA-AZ-6601-01 X 138871579 138871579 G T ATP11C Nonsense_Mutation p.C428* 0.15 TCGA-AZ-6601-01 X 144906297 144906297 C T SLITRK2 Missense_Mutation p.A785V 0.65 tolerated(0.57) benign(0.006) TCGA-AZ-6601-01 X 14748345 14748345 G A GLRA2 Missense_Mutation p.R366H 0.48 tolerated(0.21) benign(0.022) TCGA-AZ-6601-01 X 150345293 150345293 G A GPR50 Missense_Mutation p.A34T 0.08 tolerated(0.08) benign(0.019) TCGA-AZ-6601-01 X 1505289 1505289 G A SLC25A6 3'UTR 0.27 TCGA-AZ-6601-01 X 152159299 152159299 G A PNMA5 Missense_Mutation p.R282C 0.54 deleterious(0.03) possibly_damaging(0.886) TCGA-AZ-6601-01 X 152616527 152616527 G T ZNF275 3'UTR 0.70 TCGA-AZ-6601-01 X 153032860 153032860 C T PLXNB3 Missense_Mutation p.A216V 0.89 tolerated(0.12) benign(0.407) TCGA-AZ-6601-01 X 153131205 153131205 C T L1CAM Missense_Mutation p.R834Q 0.60 tolerated(0.59) benign(0.003) TCGA-AZ-6601-01 X 153586905 153586905 G A FLNA Silent p.N1502N 0.73 TCGA-AZ-6601-01 X 153694400 153694400 G A PLXNA3 Silent p.P885P 0.10 TCGA-AZ-6601-01 X 153944424 153944424 C T GAB3 Missense_Mutation p.V85M 0.66 deleterious(0.02) probably_damaging(0.978) TCGA-AZ-6601-01 X 155004663 155004663 A G SPRY3 3'UTR 0.08 TCGA-AZ-6601-01 X 15509384 15509384 G A PIR 5'UTR 0.54 TCGA-AZ-6601-01 X 17750059 17750059 C T NHS Silent p.S1456S 0.43 TCGA-AZ-6601-01 X 17819214 17819214 G A RAI2 Missense_Mutation p.T306M 0.52 deleterious(0) unknown(0) TCGA-AZ-6601-01 X 18259366 18259366 T - SCML2 3'UTR 0.29 TCGA-AZ-6601-01 X 18668673 18668673 C A CDKL5 Silent p.R981R 0.45 TCGA-AZ-6601-01 X 19983602 19983602 G T CXorf23 Silent p.S278S 0.42 TCGA-AZ-6601-01 X 23019468 23019468 A G DDX53 Missense_Mutation p.N432D 0.54 deleterious(0) benign(0.076) TCGA-AZ-6601-01 X 3235215 3235215 G A MXRA5 Silent p.S2169S 0.52 TCGA-AZ-6601-01 X 37027064 37027064 G A FAM47C Missense_Mutation p.R194Q 0.51 tolerated(0.41) benign(0.074) TCGA-AZ-6601-01 X 41428993 41428993 T C CASK Missense_Mutation p.T504A 0.21 deleterious(0) benign(0.422) TCGA-AZ-6601-01 X 47426105 47426105 C T ARAF Missense_Mutation p.R209C 0.52 deleterious(0) possibly_damaging(0.796) TCGA-AZ-6601-01 X 49029509 49029509 G A PLP2 Missense_Mutation p.A44T 0.52 tolerated(0.1) benign(0.009) TCGA-AZ-6601-01 X 49072841 49072841 C T CACNA1F Splice_Site p.X1090_splice 0.40 TCGA-AZ-6601-01 X 49079489 49079489 G A CACNA1F Missense_Mutation p.L673F 0.44 deleterious(0) probably_damaging(0.983) TCGA-AZ-6601-01 X 50659219 50659219 G A BMP15 Missense_Mutation p.R264Q 0.28 tolerated(0.11) possibly_damaging(0.465) TCGA-AZ-6601-01 X 51638317 51638317 G A MAGED1 Missense_Mutation p.A128T 0.46 tolerated_low_confidence(0.81) unknown(0) TCGA-AZ-6601-01 X 53284028 53284028 C T IQSEC2 Missense_Mutation p.R362H 0.09 deleterious(0) possibly_damaging(0.897) TCGA-AZ-6601-01 X 53436013 53436013 G A SMC1A Missense_Mutation p.R509C 0.43 deleterious(0) probably_damaging(0.978) TCGA-AZ-6601-01 X 54496652 54496652 C T FGD1 Missense_Mutation p.V300I 0.47 tolerated(0.24) benign(0.001) TCGA-AZ-6601-01 X 57623451 57623451 T C ZXDB 3'UTR 0.09 TCGA-AZ-6601-01 X 69849503 69849503 T C TEX11 Silent p.S537S 0.18 TCGA-AZ-6601-01 X 70352366 70352366 C T MED12 Missense_Mutation p.R1465C 0.60 probably_damaging(0.982) TCGA-AZ-6601-01 X 70522267 70522267 A G ITGB1BP2 Missense_Mutation p.T60A 0.60 tolerated(0.05) possibly_damaging(0.856) TCGA-AZ-6601-01 X 75649436 75649436 C A MAGEE1 Silent p.T371T 0.74 TCGA-AZ-6601-01 X 77112285 77112285 C T MAGT1 Missense_Mutation p.R238Q 0.64 deleterious(0.03) possibly_damaging(0.832) TCGA-AZ-6601-01 X 78622741 78622741 G A ITM2A 5'UTR 0.64 TCGA-AZ-6601-01 X 79938100 79938100 C T BRWD3 Missense_Mutation p.A1421T 0.57 deleterious(0.03) probably_damaging(1) TCGA-AZ-6601-01 X 8434538 8434538 G C VCX3B 3'UTR 0.44 TCGA-AZ-6601-01 X 91132378 91132378 T G PCDH11X Missense_Mutation p.I380S 0.59 deleterious(0) probably_damaging(0.948) TCGA-AZ-6601-01 Y 14847611 14847611 T - USP9Y Frame_Shift_Del p.F243Lfs*6 0.12 TCGA-AZ-6601-01 Y 14928229 14928229 G T USP9Y Missense_Mutation p.G1594C 0.34 tolerated(0.06) benign(0.043) TCGA-AZ-6601-01 Y 16941971 16941971 G A NLGN4Y Silent p.T391T 0.14 TCGA-AZ-6601-01 Y 21869129 21869129 C T KDM5D Silent p.Q1301Q 0.11 TCGA-AZ-6603-01 10 121567447 121567447 A - INPP5F Frame_Shift_Del p.K483Nfs*2 0.15 TCGA-AZ-6603-01 10 16962113 16962113 G T CUBN Missense_Mutation p.H2224N 0.32 tolerated(0.36) benign(0.074) TCGA-AZ-6603-01 10 25701295 25701295 G A GPR158 Missense_Mutation p.V410I 0.47 tolerated(0.31) benign(0.14) TCGA-AZ-6603-01 10 30306785 30306785 C T KIAA1462 3'UTR 0.17 TCGA-AZ-6603-01 10 48388554 48388554 G A RBP3 Missense_Mutation p.T775M 0.22 deleterious(0) probably_damaging(0.938) TCGA-AZ-6603-01 10 55912943 55912943 G A PCDH15 Silent p.I567I 0.40 TCGA-AZ-6603-01 10 62539949 62539949 A G CDK1 Missense_Mutation p.K9R 0.16 deleterious(0.03) benign(0.244) TCGA-AZ-6603-01 11 1020207 1020207 C T MUC6 Missense_Mutation p.G1231R 0.61 unknown(0) TCGA-AZ-6603-01 11 10776504 10776504 G A CTR9 Splice_Site p.X49_splice 0.09 TCGA-AZ-6603-01 11 109295866 109295866 C - C11orf87 3'UTR 0.15 TCGA-AZ-6603-01 11 125880348 125880355 AGCTTGGG - CDON Frame_Shift_Del p.S478Wfs*25 0.46 TCGA-AZ-6603-01 11 130332493 130332493 G A ADAMTS15 Missense_Mutation p.V454M 0.21 tolerated(0.07) benign(0.018) TCGA-AZ-6603-01 11 65404004 65404004 C T PCNXL3 Silent p.P1912P 0.11 TCGA-AZ-6603-01 11 67269534 67269534 C T PITPNM1 Missense_Mutation p.A147T 0.13 tolerated(0.18) possibly_damaging(0.597) TCGA-AZ-6603-01 11 94911955 94911955 A C SESN3 Silent p.S325S 0.12 TCGA-AZ-6603-01 12 124155831 124155831 T C TCTN2 Missense_Mutation p.L15P 0.09 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6603-01 12 53074048 53074048 G A KRT1 Missense_Mutation p.R29C 0.19 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6603-01 12 66703903 66703903 G A HELB Missense_Mutation p.D399N 0.16 tolerated(0.16) benign(0.001) TCGA-AZ-6603-01 13 114150308 114150308 C T TMCO3 Missense_Mutation p.R138C 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6603-01 13 19751435 19751435 G A TUBA3C Silent p.L230L 0.12 TCGA-AZ-6603-01 13 96578002 96578002 G A UGGT2 Missense_Mutation p.L743F 0.50 tolerated(1) benign(0.014) TCGA-AZ-6603-01 14 105936286 105936286 G A MTA1 Missense_Mutation p.D652N 0.09 deleterious(0.03) benign(0.011) TCGA-AZ-6603-01 14 50101702 50101702 T C DNAAF2 Missense_Mutation p.I56V 0.15 tolerated(0.05) possibly_damaging(0.526) TCGA-AZ-6603-01 14 55642094 55642094 G A DLGAP5 Missense_Mutation p.A424V 0.66 tolerated(0.12) benign(0.008) TCGA-AZ-6603-01 14 64682064 64682064 C T SYNE2 Missense_Mutation p.A6465V 0.71 probably_damaging(0.999) TCGA-AZ-6603-01 15 25585277 25585277 C A UBE3A Missense_Mutation p.G821V 0.20 tolerated(0.09) probably_damaging(0.98) TCGA-AZ-6603-01 15 43658737 43658737 A G ZSCAN29 Missense_Mutation p.F265L 0.51 deleterious(0.04) benign(0.036) TCGA-AZ-6603-01 15 48788316 48788316 A G FBN1 Silent p.P800P 0.23 TCGA-AZ-6603-01 15 49882084 49882084 G A FAM227B Nonsense_Mutation p.R76* 0.36 TCGA-AZ-6603-01 15 74235282 74235282 C T LOXL1 Missense_Mutation p.A397V 0.19 deleterious(0) benign(0.438) TCGA-AZ-6603-01 16 20043643 20043643 G A GPR139 Missense_Mutation p.T159I 0.50 deleterious(0.01) possibly_damaging(0.825) TCGA-AZ-6603-01 16 28549456 28549456 G C NUPR1 Missense_Mutation p.R63G 0.12 deleterious(0.01) benign(0.433) TCGA-AZ-6603-01 16 31368625 31368625 G A ITGAX Missense_Mutation p.G124R 0.47 deleterious(0) probably_damaging(1) TCGA-AZ-6603-01 16 51175782 51175782 G A SALL1 Silent p.N117N 0.29 TCGA-AZ-6603-01 16 67401091 67401091 A C LRRC36 Missense_Mutation p.K309T 0.15 deleterious_low_confidence(0) benign(0.073) TCGA-AZ-6603-01 17 33269518 33269518 G A CCT6B Silent p.V290V 0.12 TCGA-AZ-6603-01 17 4500240 4500240 G A SMTNL2 Missense_Mutation p.E359K 0.57 deleterious(0) possibly_damaging(0.515) TCGA-AZ-6603-01 17 66881383 66881383 A - ABCA8 Frame_Shift_Del p.L1128* 0.23 TCGA-AZ-6603-01 17 7578534 7578534 C A TP53 Missense_Mutation p.K132N 0.47 deleterious(0) probably_damaging(1) TCGA-AZ-6603-01 17 7949004 7949004 G A ALOX15B Silent p.K400K 0.09 TCGA-AZ-6603-01 19 13007165 13007165 C G GCDH Missense_Mutation p.T261R 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AZ-6603-01 19 14910585 14910585 G A OR7C1 Missense_Mutation p.R122C 0.18 deleterious_low_confidence(0.01) benign(0.226) TCGA-AZ-6603-01 19 1784925 1784925 A G ATP8B3 Missense_Mutation p.S1185P 0.31 deleterious(0.04) possibly_damaging(0.616) TCGA-AZ-6603-01 19 38964278 38964278 G A RYR1 Missense_Mutation p.E1343K 0.51 benign(0.137) TCGA-AZ-6603-01 19 52216670 52216670 G A HAS1 3'UTR 0.21 TCGA-AZ-6603-01 1 118166248 118166248 G A FAM46C Missense_Mutation p.R253Q 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-AZ-6603-01 1 120906035 120906035 G A RP11-439A17.4 5'Flank 0.43 TCGA-AZ-6603-01 1 146680432 146680432 C G FMO5 Missense_Mutation p.G271A 0.43 deleterious(0.04) possibly_damaging(0.571) TCGA-AZ-6603-01 1 157497673 157497673 C T FCRL5 Missense_Mutation p.R565H 0.64 tolerated(0.15) benign(0.09) TCGA-AZ-6603-01 1 29040719 29040719 G T GMEB1 Missense_Mutation p.A386S 0.25 tolerated(0.12) possibly_damaging(0.6) TCGA-AZ-6603-01 1 32828388 32828388 C A TSSK3 Missense_Mutation p.S29Y 0.56 deleterious(0) possibly_damaging(0.697) TCGA-AZ-6603-01 20 31973533 31973533 C T CDK5RAP1 Missense_Mutation p.V267I 0.75 deleterious(0) probably_damaging(1) TCGA-AZ-6603-01 20 36965616 36965616 C T BPI 3'UTR 0.15 TCGA-AZ-6603-01 20 49197963 49197963 C T PTPN1 Missense_Mutation p.T417M 0.20 deleterious(0) probably_damaging(0.97) TCGA-AZ-6603-01 21 41385098 41385098 C T DSCAM Missense_Mutation p.V1968M 0.19 deleterious_low_confidence(0.01) benign(0.013) TCGA-AZ-6603-01 21 46308786 46308786 G A ITGB2 Silent p.F634F 0.12 TCGA-AZ-6603-01 22 36902025 36902025 C T FOXRED2 Missense_Mutation p.V149I 0.53 tolerated(0.52) possibly_damaging(0.49) TCGA-AZ-6603-01 2 179437012 179437012 C T TTN Missense_Mutation p.R24616Q 0.47 TCGA-AZ-6603-01 2 219566746 219566746 C T STK36 3'UTR 0.10 TCGA-AZ-6603-01 2 238283537 238283537 C T COL6A3 Missense_Mutation p.R1066H 0.50 probably_damaging(1) TCGA-AZ-6603-01 2 26457091 26457093 TCC - HADHA In_Frame_Del p.G149del 0.35 TCGA-AZ-6603-01 2 33759419 33759419 T C RASGRP3 Silent p.D371D 0.19 TCGA-AZ-6603-01 3 186507776 186507777 - T RFC4 Frame_Shift_Ins p.L359Vfs*8 0.25 TCGA-AZ-6603-01 3 97731305 97731305 T A GABRR3 Intron 0.14 TCGA-AZ-6603-01 3 97983970 97983970 C T OR5H6 Missense_Mutation p.P281L 0.39 tolerated(0.4) benign(0.009) TCGA-AZ-6603-01 4 123197175 123197175 T C KIAA1109 Silent p.F2863F 0.23 TCGA-AZ-6603-01 4 151505048 151505048 G A MAB21L2 Silent p.T289T 0.26 TCGA-AZ-6603-01 4 156135052 156135052 C A NPY2R 5'UTR 0.19 TCGA-AZ-6603-01 4 25760630 25760630 C T SEL1L3 Missense_Mutation p.D1006N 0.21 deleterious(0.02) possibly_damaging(0.69) TCGA-AZ-6603-01 4 69179932 69179932 G C YTHDC1 Missense_Mutation p.P690R 0.49 tolerated_low_confidence(0.05) unknown(0) TCGA-AZ-6603-01 4 86921909 86921909 G T ARHGAP24 3'UTR 0.26 TCGA-AZ-6603-01 5 112111375 112111375 T - APC Frame_Shift_Del p.Y158Ifs*12 0.38 TCGA-AZ-6603-01 5 140746019 140746019 G A PCDHGA5 Missense_Mutation p.V708I 0.37 tolerated_low_confidence(0.08) benign(0.385) TCGA-AZ-6603-01 5 145719995 145719995 G A POU4F3 Silent p.S335S 0.79 TCGA-AZ-6603-01 5 149495354 149495354 C T PDGFRB Missense_Mutation p.R1098Q 0.23 tolerated_low_confidence(0.44) benign(0.001) TCGA-AZ-6603-01 5 176929983 176929983 G A DOK3 3'Flank 0.68 TCGA-AZ-6603-01 5 178410142 178410142 G A GRM6 Silent p.P735P 0.19 TCGA-AZ-6603-01 5 63256898 63256898 G A HTR1A Missense_Mutation p.R217C 0.16 deleterious(0) probably_damaging(0.982) TCGA-AZ-6603-01 6 128718708 128718708 C A PTPRK Intron 0.23 TCGA-AZ-6603-01 6 27419706 27419706 A C ZNF184 Silent p.S544S 0.27 TCGA-AZ-6603-01 6 42974732 42974732 C T PPP2R5D Missense_Mutation p.L136F 0.36 deleterious(0.01) probably_damaging(0.954) TCGA-AZ-6603-01 6 49425627 49425627 A G MUT Missense_Mutation p.I177T 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-AZ-6603-01 6 75862112 75862112 C T COL12A1 Missense_Mutation p.V1218M 0.32 possibly_damaging(0.668) TCGA-AZ-6603-01 7 124481154 124481154 T A POT1 Missense_Mutation p.Q414H 0.11 tolerated(0.42) benign(0.037) TCGA-AZ-6603-01 7 127484388 127484388 G A SND1 Silent p.T418T 0.13 TCGA-AZ-6603-01 7 141734529 141734529 C T MGAM Missense_Mutation p.A616V 0.25 tolerated(0.1) possibly_damaging(0.685) TCGA-AZ-6603-01 7 143000971 143000971 G A CASP2 Silent p.P354P 0.10 TCGA-AZ-6603-01 7 18625006 18625006 G A HDAC9 Missense_Mutation p.R42H 0.05 deleterious(0.02) probably_damaging(0.99) TCGA-AZ-6603-01 7 23750012 23750012 C T STK31 Intron 0.15 TCGA-AZ-6603-01 7 4917282 4917282 C T RADIL Silent p.S163S 0.59 TCGA-AZ-6603-01 8 1497834 1497834 G A DLGAP2 Silent p.P325P 0.50 TCGA-AZ-6603-01 8 23702183 23702185 CTT - STC1 3'UTR 0.43 TCGA-AZ-6603-01 8 75924714 75924714 G T CRISPLD1 Missense_Mutation p.S102I 0.11 tolerated(0.06) benign(0.058) TCGA-AZ-6603-01 9 104499784 104499784 C A GRIN3A Missense_Mutation p.D160Y 0.25 deleterious(0) probably_damaging(0.987) TCGA-AZ-6603-01 9 117552903 117552903 G A TNFSF15 Silent p.L195L 0.22 TCGA-AZ-6603-01 9 125582413 125582413 C T PDCL Missense_Mutation p.R286H 0.09 tolerated(0.21) benign(0.004) TCGA-AZ-6603-01 9 126519988 126519988 A G DENND1A Missense_Mutation p.I99T 0.11 deleterious(0) probably_damaging(0.994) TCGA-AZ-6603-01 9 130210156 130210156 G A RPL12 Silent p.A164A 0.20 TCGA-AZ-6603-01 9 19786305 19786305 G A SLC24A2 Missense_Mutation p.P187L 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6603-01 9 35091830 35091830 C T PIGO Missense_Mutation p.R685H 0.48 tolerated(0.11) possibly_damaging(0.548) TCGA-AZ-6603-01 9 99150686 99150686 T C ZNF367 Missense_Mutation p.K296E 0.10 tolerated(0.07) probably_damaging(0.997) TCGA-AZ-6603-01 X 119388326 119388326 T C ZBTB33 Silent p.N352N 0.10 TCGA-AZ-6603-01 X 152226463 152226463 G A PNMA3 Missense_Mutation p.E351K 0.26 tolerated(0.78) benign(0.06) TCGA-AZ-6603-01 X 54777534 54777534 C T ITIH6 Missense_Mutation p.R1211Q 0.15 tolerated(0.32) benign(0.02) TCGA-AZ-6603-01 X 57146213 57146213 A G SPIN2B 3'UTR 0.13 TCGA-AZ-6603-01 X 57620489 57620489 G A ZXDB Missense_Mutation p.D670N 0.13 deleterious(0.03) benign(0.082) TCGA-AZ-6603-01 X 8768148 8768148 G A FAM9A Missense_Mutation p.T22M 0.62 tolerated_low_confidence(0.27) benign(0.011) TCGA-AZ-6605-01 10 105200273 105200273 C T PDCD11 Nonsense_Mutation p.Q1459* 0.35 TCGA-AZ-6605-01 10 133954043 133954043 C T JAKMIP3 Missense_Mutation p.T478M 0.13 tolerated(0.09) benign(0.397) TCGA-AZ-6605-01 10 61444032 61444032 C T SLC16A9 Silent p.S6S 0.10 TCGA-AZ-6605-01 10 6154237 6154237 C T RBM17 Missense_Mutation p.H257Y 0.24 tolerated(0.15) probably_damaging(0.978) TCGA-AZ-6605-01 10 8006413 8006413 C T TAF3 Missense_Mutation p.R314C 0.29 deleterious(0.03) benign(0.071) TCGA-AZ-6605-01 11 108385236 108385236 G A EXPH5 Missense_Mutation p.A333V 0.12 tolerated(0.1) probably_damaging(0.999) TCGA-AZ-6605-01 11 110124697 110124697 C T RDX Silent p.E311E 0.14 TCGA-AZ-6605-01 11 122733143 122733143 A G CRTAM Intron 0.08 TCGA-AZ-6605-01 11 124790328 124790328 G T HEPACAM 3'UTR 0.35 TCGA-AZ-6605-01 11 134014849 134014849 G A JAM3 Missense_Mutation p.R191H 0.06 tolerated(0.55) benign(0.009) TCGA-AZ-6605-01 11 59271193 59271193 G A OR4D11 Missense_Mutation p.V49M 0.24 deleterious(0) probably_damaging(0.999) TCGA-AZ-6605-01 11 5969284 5969284 T C OR56A3 Silent p.G236G 0.16 TCGA-AZ-6605-01 11 63680001 63680001 G A RCOR2 Missense_Mutation p.R345C 0.14 deleterious(0) possibly_damaging(0.801) TCGA-AZ-6605-01 11 64668556 64668556 A G ATG2A Silent p.D1376D 0.22 TCGA-AZ-6605-01 11 6953543 6953543 C T ZNF215 Nonsense_Mutation p.R14* 0.09 TCGA-AZ-6605-01 11 82639834 82639834 A G C11orf82 Silent p.K43K 0.22 TCGA-AZ-6605-01 12 119563241 119563241 C T SRRM4 Missense_Mutation p.R191W 0.17 deleterious_low_confidence(0) unknown(0) TCGA-AZ-6605-01 12 124132567 124132567 C A GTF2H3 Silent p.G86G 0.15 TCGA-AZ-6605-01 12 125626652 125626652 C T AACS Silent p.G632G 0.09 TCGA-AZ-6605-01 12 18836135 18836135 C T PLCZ1 3'UTR 0.26 TCGA-AZ-6605-01 12 4763993 4763993 C T NDUFA9 Missense_Mutation p.R75C 0.23 deleterious(0) probably_damaging(0.973) TCGA-AZ-6605-01 12 53898542 53898542 C A TARBP2 Missense_Mutation p.P186T 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-6605-01 12 58009397 58009397 G A ARHGEF25 Missense_Mutation p.V420I 0.12 tolerated(0.11) benign(0.309) TCGA-AZ-6605-01 12 68705 68705 A C RP11-598F7.1 RNA 0.15 TCGA-AZ-6605-01 12 75902132 75902132 G A KRR1 Silent p.F60F 0.09 TCGA-AZ-6605-01 12 91498016 91498016 G A LUM Missense_Mutation p.R315C 0.13 deleterious(0.02) benign(0.39) TCGA-AZ-6605-01 12 94975958 94975958 C G TMCC3 Missense_Mutation p.Q145H 0.14 tolerated(0.29) probably_damaging(0.999) TCGA-AZ-6605-01 12 95452198 95452198 A T NR2C1 Missense_Mutation p.N144K 0.10 tolerated(0.17) probably_damaging(0.998) TCGA-AZ-6605-01 12 97102540 97102540 T G C12orf55 Missense_Mutation p.V2228G 0.09 tolerated(0.09) benign(0.001) TCGA-AZ-6605-01 13 23912943 23912943 T C SACS Missense_Mutation p.K1691R 0.10 benign(0.013) TCGA-AZ-6605-01 13 36909685 36909685 G T SPG20 Missense_Mutation p.L95I 0.09 deleterious(0.02) probably_damaging(0.975) TCGA-AZ-6605-01 13 49765416 49765416 G T FNDC3A Nonsense_Mutation p.E708* 0.13 TCGA-AZ-6605-01 13 95050726 95050726 G T GPC6 Missense_Mutation p.L432F 0.15 tolerated(0.21) benign(0.02) TCGA-AZ-6605-01 14 102916016 102916016 G A TECPR2 Silent p.T1042T 0.17 TCGA-AZ-6605-01 14 55621514 55621514 G A DLGAP5 Silent p.V628V 0.15 TCGA-AZ-6605-01 15 49325259 49325259 C T SECISBP2L Silent p.P189P 0.12 TCGA-AZ-6605-01 15 79092795 79092795 G A ADAMTS7 Silent p.R65R 0.25 TCGA-AZ-6605-01 16 50339707 50339707 G A ADCY7 Missense_Mutation p.D567N 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-AZ-6605-01 16 65038860 65038860 C T CDH11 5'UTR 0.30 TCGA-AZ-6605-01 16 68862096 68862096 G A CDH1 Silent p.L728L 0.10 TCGA-AZ-6605-01 16 68862097 68862097 C T CDH1 Silent p.L729L 0.10 TCGA-AZ-6605-01 16 735358 735358 T C WDR24 Missense_Mutation p.M640V 0.08 tolerated(0.08) benign(0.23) TCGA-AZ-6605-01 16 89790053 89790053 C T ZNF276 Silent p.S314S 0.30 TCGA-AZ-6605-01 17 1840144 1840144 G A RTN4RL1 Silent p.A324A 0.16 TCGA-AZ-6605-01 17 27284242 27284242 C A SEZ6 Missense_Mutation p.C838F 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-6605-01 17 32483249 32483249 C T ASIC2 Silent p.R101R 0.10 TCGA-AZ-6605-01 17 48156606 48156606 T C ITGA3 Missense_Mutation p.L856P 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-6605-01 17 7578466 7578466 G A TP53 Missense_Mutation p.T155I 0.29 deleterious(0.01) possibly_damaging(0.856) TCGA-AZ-6605-01 17 8044350 8044350 T C PER1 3'UTR 0.11 TCGA-AZ-6605-01 18 12030352 12030352 C T IMPA2 Silent p.L254L 0.19 TCGA-AZ-6605-01 18 55024348 55024348 G A ST8SIA3 Silent p.G169G 0.17 TCGA-AZ-6605-01 19 12767413 12767413 T C MAN2B1 Missense_Mutation p.D539G 0.11 tolerated(0.09) benign(0.168) TCGA-AZ-6605-01 19 1397401 1397401 T C GAMT 3'Flank 0.27 TCGA-AZ-6605-01 19 22271600 22271600 G C ZNF257 Missense_Mutation p.G350R 0.12 deleterious(0) probably_damaging(0.995) TCGA-AZ-6605-01 19 39669111 39669111 C T PAK4 Silent p.D556D 0.13 TCGA-AZ-6605-01 19 44933979 44933979 C T ZNF229 Missense_Mutation p.R326H 0.13 tolerated(0.61) benign(0) TCGA-AZ-6605-01 19 49370809 49370809 G A PLEKHA4 Silent p.S23S 0.19 TCGA-AZ-6605-01 19 49918252 49918252 C T CCDC155 Missense_Mutation p.T458M 0.15 tolerated_low_confidence(0.23) benign(0.033) TCGA-AZ-6605-01 19 50475134 50475134 G C VRK3 3'Flank 0.14 TCGA-AZ-6605-01 19 54823313 54823313 C T LILRA5 Missense_Mutation p.R77H 0.12 tolerated(0.56) benign(0.005) TCGA-AZ-6605-01 19 55870570 55870570 A G FAM71E2 Missense_Mutation p.S556P 0.10 tolerated(0.23) benign(0.267) TCGA-AZ-6605-01 19 5616305 5616305 G A SAFB2 Silent p.G127G 0.11 TCGA-AZ-6605-01 19 57286651 57286651 C A ZIM2 Missense_Mutation p.C330F 0.12 deleterious(0) probably_damaging(0.98) TCGA-AZ-6605-01 19 58578502 58578502 A G ZNF135 Missense_Mutation p.Q241R 0.10 tolerated(0.15) benign(0.006) TCGA-AZ-6605-01 19 58724138 58724138 G A ZNF274 Missense_Mutation p.G530R 0.21 deleterious(0) probably_damaging(0.992) TCGA-AZ-6605-01 1 10190572 10190572 G C UBE4B Silent p.R570R 0.09 TCGA-AZ-6605-01 1 116937864 116937864 C T ATP1A1 Missense_Mutation p.A598V 0.17 deleterious(0.01) possibly_damaging(0.729) TCGA-AZ-6605-01 1 147230443 147230443 G A GJA5 Nonsense_Mutation p.R302* 0.20 TCGA-AZ-6605-01 1 151288877 151288877 C - PI4KB Frame_Shift_Del p.S40Pfs*3 0.19 TCGA-AZ-6605-01 1 154931860 154931860 G T PYGO2 Missense_Mutation p.L206M 0.11 tolerated(0.45) benign(0.001) TCGA-AZ-6605-01 1 158595943 158595943 G T SPTA1 Missense_Mutation p.A1968E 0.15 deleterious(0.03) probably_damaging(0.917) TCGA-AZ-6605-01 1 158817521 158817521 A C MNDA Missense_Mutation p.S331R 0.12 tolerated(0.24) benign(0.038) TCGA-AZ-6605-01 1 161277206 161277206 G A MPZ Missense_Mutation p.P26S 0.16 tolerated(0.16) probably_damaging(0.994) TCGA-AZ-6605-01 1 162326831 162326831 G A NOS1AP Missense_Mutation p.G282S 0.48 tolerated(0.33) benign(0) TCGA-AZ-6605-01 1 183086481 183086481 A G LAMC1 Missense_Mutation p.R531G 0.11 tolerated(0.37) benign(0.012) TCGA-AZ-6605-01 1 2321365 2321365 G A MORN1 Silent p.H49H 0.11 TCGA-AZ-6605-01 1 26371516 26371516 G A SLC30A2 Silent p.C81C 0.27 TCGA-AZ-6605-01 1 27721053 27721053 G A GPR3 Missense_Mutation p.V251M 0.16 deleterious(0.01) benign(0.12) TCGA-AZ-6605-01 1 44086565 44086565 C T PTPRF Silent p.G1807G 0.19 TCGA-AZ-6605-01 1 59844505 59844505 G C FGGY Missense_Mutation p.A184P 0.13 deleterious(0.03) possibly_damaging(0.522) TCGA-AZ-6605-01 1 77779640 77779640 C A AK5 Intron 0.24 TCGA-AZ-6605-01 20 45130930 45130930 C T ZNF334 Missense_Mutation p.E350K 0.10 tolerated(0.29) benign(0.029) TCGA-AZ-6605-01 21 35821640 35821640 C T KCNE1 Missense_Mutation p.R98Q 0.21 deleterious(0.02) probably_damaging(0.977) TCGA-AZ-6605-01 21 46918238 46918238 C T COL18A1 Intron 0.18 TCGA-AZ-6605-01 22 21799294 21799294 A G HIC2 Missense_Mutation p.N37S 0.09 deleterious(0) possibly_damaging(0.621) TCGA-AZ-6605-01 22 21832152 21832152 C T PI4KAP2 RNA 0.32 TCGA-AZ-6605-01 22 23744065 23744065 T C ZDHHC8P1 RNA 0.18 TCGA-AZ-6605-01 2 106717573 106717573 C T UXS1 Missense_Mutation p.D309N 0.21 deleterious(0.01) probably_damaging(0.933) TCGA-AZ-6605-01 2 168104107 168104107 A G XIRP2 Missense_Mutation p.T2069A 0.08 benign(0.006) TCGA-AZ-6605-01 2 179412723 179412723 T C TTN Silent p.Q31210Q 0.08 TCGA-AZ-6605-01 2 186673509 186673509 C A FSIP2 Silent p.A6581A 0.10 TCGA-AZ-6605-01 2 209190149 209190149 T C PIKFYVE Missense_Mutation p.F872L 0.08 deleterious(0) probably_damaging(0.995) TCGA-AZ-6605-01 2 219029081 219029081 C T CXCR1 Missense_Mutation p.R285Q 0.19 tolerated(0.78) benign(0.009) TCGA-AZ-6605-01 2 239010685 239010685 A G ESPNL Missense_Mutation p.E133G 0.16 deleterious(0) probably_damaging(1) TCGA-AZ-6605-01 2 241401889 241401889 G A GPC1 Missense_Mutation p.G203R 0.21 deleterious(0) probably_damaging(0.996) TCGA-AZ-6605-01 2 39553333 39553333 C G MAP4K3 Missense_Mutation p.E206Q 0.09 deleterious(0) probably_damaging(1) TCGA-AZ-6605-01 2 43798946 43798946 A G THADA Missense_Mutation p.V655A 0.10 deleterious(0.02) benign(0.13) TCGA-AZ-6605-01 2 47643544 47643544 T C MSH2 Missense_Mutation p.M351T 0.13 tolerated(0.25) benign(0.008) TCGA-AZ-6605-01 2 5840188 5840188 T C SOX11 3'UTR 0.08 TCGA-AZ-6605-01 2 85892817 85892817 C T SFTPB Missense_Mutation p.R177Q 0.29 tolerated(0.6) benign(0.019) TCGA-AZ-6605-01 2 99180038 99180038 G A INPP4A Missense_Mutation p.A661T 0.12 deleterious(0) probably_damaging(0.999) TCGA-AZ-6605-01 3 113729669 113729669 G C KIAA1407 Missense_Mutation p.L455V 0.12 tolerated(0.33) benign(0.011) TCGA-AZ-6605-01 3 126708042 126708042 C A PLXNA1 Silent p.S202S 0.09 TCGA-AZ-6605-01 3 159995140 159995144 CAAGG - IFT80 Frame_Shift_Del p.V685Sfs*8 0.20 TCGA-AZ-6605-01 3 186959285 186959285 T C MASP1 Silent p.L429L 0.10 TCGA-AZ-6605-01 3 30903165 30903165 C A GADL1 Missense_Mutation p.A44S 0.23 tolerated(0.38) benign(0.002) TCGA-AZ-6605-01 4 126412372 126412372 C T FAT4 Missense_Mutation p.R4799C 0.20 probably_damaging(0.996) TCGA-AZ-6605-01 4 169928031 169928031 A G CBR4 Missense_Mutation p.L92S 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-AZ-6605-01 4 175413120 175413120 G C HPGD Missense_Mutation p.A263G 0.15 tolerated_low_confidence(0.18) benign(0) TCGA-AZ-6605-01 4 1920111 1920111 A G WHSC1 Missense_Mutation p.R391G 0.09 tolerated(0.47) benign(0.001) TCGA-AZ-6605-01 4 5827220 5827220 C T CRMP1 Splice_Site p.X657_splice 0.18 TCGA-AZ-6605-01 4 6064057 6064057 G A JAKMIP1 Silent p.D514D 0.24 TCGA-AZ-6605-01 4 6303959 6303959 G A WFS1 Missense_Mutation p.V813M 0.15 deleterious(0.04) possibly_damaging(0.872) TCGA-AZ-6605-01 4 68687993 68687993 C A TMPRSS11D 3'UTR 0.28 TCGA-AZ-6605-01 4 84391525 84391525 G A FAM175A Missense_Mutation p.R103C 0.29 deleterious(0) probably_damaging(1) TCGA-AZ-6605-01 4 88767462 88767462 G A MEPE Missense_Mutation p.R481Q 0.23 tolerated(0.35) benign(0.022) TCGA-AZ-6605-01 5 102364651 102364651 G A PAM Missense_Mutation p.R936Q 0.12 deleterious(0.01) probably_damaging(0.975) TCGA-AZ-6605-01 5 112151261 112151261 C T APC Nonsense_Mutation p.R302* 0.35 TCGA-AZ-6605-01 5 112175198 112175198 C T APC Nonsense_Mutation p.Q1303* 0.11 TCGA-AZ-6605-01 5 140595378 140595378 G A PCDHB13 Silent p.V561V 0.15 TCGA-AZ-6605-01 5 141244624 141244624 C G PCDH1 Missense_Mutation p.E424D 0.15 tolerated(0.2) probably_damaging(0.997) TCGA-AZ-6605-01 5 154185465 154185465 T C LARP1 Silent p.P780P 0.27 TCGA-AZ-6605-01 5 169454876 169454876 G A DOCK2 Missense_Mutation p.E1131K 0.08 deleterious(0.02) possibly_damaging(0.899) TCGA-AZ-6605-01 5 169677770 169677770 T C LCP2 Silent p.Q481Q 0.09 TCGA-AZ-6605-01 5 33937912 33937912 C T RXFP3 Missense_Mutation p.A356V 0.23 tolerated(0.97) benign(0.004) TCGA-AZ-6605-01 5 38464122 38464122 C A EGFLAM 3'UTR 0.19 TCGA-AZ-6605-01 5 38885488 38885488 C T OSMR Silent p.T247T 0.30 TCGA-AZ-6605-01 5 41004559 41004559 G A MROH2B Silent p.V1361V 0.25 TCGA-AZ-6605-01 5 68661331 68661331 G A TAF9 Silent p.R78R 0.10 TCGA-AZ-6605-01 5 68667936 68667936 G T RAD17 Intron 0.25 TCGA-AZ-6605-01 5 99871389 99871389 C T FAM174A Missense_Mutation p.T52I 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-AZ-6605-01 6 100895245 100895245 C T SIM1 Silent p.A299A 0.14 TCGA-AZ-6605-01 6 102372528 102372528 G A GRIK2 Missense_Mutation p.V601M 0.21 tolerated(0.07) probably_damaging(0.952) TCGA-AZ-6605-01 6 160913882 160913882 C T LPAL2 RNA 0.20 TCGA-AZ-6605-01 6 169625301 169625301 G A THBS2 Silent p.G904G 0.09 TCGA-AZ-6605-01 6 170700183 170700183 G A FAM120B Missense_Mutation p.R858Q 0.17 tolerated(0.06) benign(0.261) TCGA-AZ-6605-01 6 395911 395911 G A IRF4 Silent p.T156T 0.12 TCGA-AZ-6605-01 6 656212 656212 T C HUS1B Missense_Mutation p.I245V 0.10 tolerated(1) benign(0.121) TCGA-AZ-6605-01 6 81053502 81053502 G A BCKDHB Missense_Mutation p.R387Q 0.11 tolerated(0.09) benign(0.003) TCGA-AZ-6605-01 6 83839161 83839161 A C DOPEY1 Missense_Mutation p.S759R 0.09 deleterious(0) probably_damaging(0.998) TCGA-AZ-6605-01 6 93979369 93979369 C A EPHA7 Nonsense_Mutation p.E487* 0.08 TCGA-AZ-6605-01 7 117174419 117174419 A G CFTR Silent p.E193E 0.10 TCGA-AZ-6605-01 7 128489593 128489593 C T FLNC Silent p.F1720F 0.11 TCGA-AZ-6605-01 7 139737585 139737585 C T PARP12 Silent p.P418P 0.11 TCGA-AZ-6605-01 7 143079923 143079923 G A ZYX Silent p.V177V 0.11 TCGA-AZ-6605-01 7 150815602 150815602 G A AGAP3 Silent p.K284K 0.22 TCGA-AZ-6605-01 7 31691614 31691614 G T CCDC129 Nonsense_Mutation p.E951* 0.08 TCGA-AZ-6605-01 8 101118127 101118127 G A RGS22 Missense_Mutation p.A8V 0.14 deleterious(0.04) benign(0.001) TCGA-AZ-6605-01 8 11180159 11180159 C A MTMR9 Silent p.S504S 0.12 TCGA-AZ-6605-01 8 116599405 116599405 C T TRPS1 Silent p.R841R 0.19 TCGA-AZ-6605-01 8 12886911 12886911 T A KIAA1456 3'UTR 0.15 TCGA-AZ-6605-01 8 143559719 143559719 C A BAI1 Missense_Mutation p.P520Q 0.16 deleterious(0) possibly_damaging(0.804) TCGA-AZ-6605-01 8 42837788 42837788 G A HOOK3 Missense_Mutation p.S447N 0.52 tolerated(0.1) benign(0.003) TCGA-AZ-6605-01 8 73848914 73848914 C T KCNB2 Missense_Mutation p.R442W 0.07 deleterious(0) probably_damaging(0.997) TCGA-AZ-6605-01 8 82665464 82665464 T C CHMP4C Missense_Mutation p.V119A 0.08 tolerated(1) benign(0.002) TCGA-AZ-6605-01 8 92982984 92982984 T C RUNX1T1 Missense_Mutation p.T492A 0.12 tolerated(0.93) benign(0.004) TCGA-AZ-6605-01 9 116617 116617 G A FOXD4 3'UTR 0.14 TCGA-AZ-6605-01 9 138011965 138011965 G A OLFM1 Missense_Mutation p.G449S 0.24 tolerated(0.13) probably_damaging(0.983) TCGA-AZ-6605-01 9 32466436 32466436 C G DDX58 Missense_Mutation p.R730T 0.12 deleterious(0.02) probably_damaging(1) TCGA-AZ-6605-01 9 32635451 32635451 C T TAF1L Missense_Mutation p.G43S 0.25 deleterious(0) probably_damaging(1) TCGA-AZ-6605-01 9 35957563 35957563 A G OR2S2 Missense_Mutation p.F178S 0.08 deleterious(0) probably_damaging(0.983) TCGA-AZ-6605-01 9 84609359 84609359 A G SPATA31D1 Missense_Mutation p.N1325S 0.12 tolerated(0.25) benign(0.02) TCGA-AZ-6605-01 9 95609097 95609097 G A ZNF484 Missense_Mutation p.H660Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-AZ-6605-01 X 100524095 100524095 T C TAF7L 3'UTR 0.52 TCGA-AZ-6605-01 X 110544830 110544830 G A DCX 3'UTR 0.50 TCGA-AZ-6605-01 X 110970047 110970047 G C ALG13 Missense_Mutation p.E580D 0.14 tolerated(0.64) benign(0.008) TCGA-AZ-6605-01 X 113997811 113997811 C T HTR2C Intron 0.18 TCGA-AZ-6605-01 X 152814217 152814217 G A ATP2B3 Missense_Mutation p.V415M 0.13 deleterious(0) probably_damaging(0.973) TCGA-AZ-6605-01 X 153129901 153129901 C T L1CAM Silent p.Q1066Q 0.14 TCGA-AZ-6605-01 X 1755356 1755356 G A ASMT Silent p.P271P 0.35 TCGA-AZ-6605-01 X 54321058 54321058 T C WNK3 Missense_Mutation p.T541A 0.11 tolerated(0.36) benign(0.005) TCGA-AZ-6605-01 X 69368667 69368667 C T IGBP1 Silent p.L245L 0.20 TCGA-AZ-6605-01 X 79990624 79990624 A G BRWD3 Splice_Site p.X329_splice 0.49 TCGA-AZ-6606-01 10 114177676 114177676 T C ACSL5 Missense_Mutation p.F487L 0.09 tolerated(1) benign(0.001) TCGA-AZ-6606-01 10 115374034 115374034 C T NRAP Missense_Mutation p.E1070K 0.12 deleterious(0.01) possibly_damaging(0.868) TCGA-AZ-6606-01 10 375466 375466 G C DIP2C Silent p.A1220A 0.42 TCGA-AZ-6606-01 10 93221924 93221924 G A HECTD2 Missense_Mutation p.D195N 0.41 tolerated(0.07) possibly_damaging(0.566) TCGA-AZ-6606-01 11 105850539 105850539 C A GRIA4 3'UTR 0.46 TCGA-AZ-6606-01 11 113113550 113113550 G T NCAM1 Intron 0.24 TCGA-AZ-6606-01 11 116661110 116661110 C T APOA5 Missense_Mutation p.E279K 0.41 tolerated(0.35) benign(0.033) TCGA-AZ-6606-01 11 122848465 122848465 G A BSX Silent p.A198A 0.41 TCGA-AZ-6606-01 11 18253087 18253087 C T SAA4 Missense_Mutation p.D119N 0.39 tolerated(1) benign(0.002) TCGA-AZ-6606-01 11 20805376 20805376 G T NELL1 Missense_Mutation p.S112I 0.34 deleterious(0) probably_damaging(0.968) TCGA-AZ-6606-01 11 25071589 25071589 A C LUZP2 Missense_Mutation p.Q257H 0.12 tolerated_low_confidence(0.05) possibly_damaging(0.799) TCGA-AZ-6606-01 11 4470783 4470783 G A OR52K2 Missense_Mutation p.D72N 0.34 deleterious(0.01) benign(0.353) TCGA-AZ-6606-01 11 55735870 55735870 G A OR10AG1 Missense_Mutation p.L24F 0.09 tolerated(0.24) benign(0.004) TCGA-AZ-6606-01 11 56185150 56185150 G A OR5R1 Silent p.L187L 0.46 TCGA-AZ-6606-01 11 64419013 64419013 A G NRXN2 Missense_Mutation p.F878L 0.10 deleterious(0) probably_damaging(0.954) TCGA-AZ-6606-01 11 65348756 65348756 C T EHBP1L1 Nonsense_Mutation p.R260* 0.39 TCGA-AZ-6606-01 11 720154 720154 G T EPS8L2 Missense_Mutation p.K86N 0.18 deleterious(0) probably_damaging(0.93) TCGA-AZ-6606-01 11 73610247 73610247 C T PAAF1 Silent p.D113D 0.30 TCGA-AZ-6606-01 12 10532349 10532349 C - KLRK1 Frame_Shift_Del p.G64Efs*8 0.15 TCGA-AZ-6606-01 12 117672544 117672544 G A NOS1 Missense_Mutation p.R1055C 0.72 deleterious(0.01) probably_damaging(0.923) TCGA-AZ-6606-01 12 117680472 117680472 G A NOS1 Missense_Mutation p.R1035W 0.13 deleterious(0) possibly_damaging(0.843) TCGA-AZ-6606-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.78 deleterious(0) possibly_damaging(0.479) TCGA-AZ-6606-01 13 101257157 101257157 A C TMTC4 3'UTR 0.26 TCGA-AZ-6606-01 13 114776713 114776713 C T RASA3 Silent p.T508T 0.09 TCGA-AZ-6606-01 13 37269857 37269857 G A SERTM1 3'UTR 0.06 TCGA-AZ-6606-01 13 46539449 46539449 C T ZC3H13 Silent p.K1480K 0.05 TCGA-AZ-6606-01 13 47243225 47243225 C T LRCH1 Silent p.I171I 0.13 TCGA-AZ-6606-01 13 47365498 47365498 T G ESD Missense_Mutation p.K17N 0.06 tolerated(0.14) benign(0.396) TCGA-AZ-6606-01 13 67801646 67801646 A T PCDH9 Silent p.T309T 0.08 TCGA-AZ-6606-01 14 21553929 21553929 G C ARHGEF40 Missense_Mutation p.E1348Q 0.15 tolerated(0.28) benign(0.339) TCGA-AZ-6606-01 15 42614113 42614113 G A GANC Nonsense_Mutation p.W396* 0.37 TCGA-AZ-6606-01 15 52901904 52901904 A G FAM214A Missense_Mutation p.S403P 0.11 tolerated(0.13) benign(0.013) TCGA-AZ-6606-01 15 65209683 65209683 G A ANKDD1A Silent p.A79A 0.08 TCGA-AZ-6606-01 16 11931459 11931459 G A RSL1D1 3'UTR 0.56 TCGA-AZ-6606-01 16 20837188 20837188 A T AC004381.6 Missense_Mutation p.I247F 0.45 deleterious(0) possibly_damaging(0.892) TCGA-AZ-6606-01 16 23197556 23197556 G A SCNN1G 5'UTR 0.43 TCGA-AZ-6606-01 16 29824318 29824318 C T PRRT2 5'UTR 0.36 TCGA-AZ-6606-01 16 31382514 31382514 G A ITGAX Missense_Mutation p.R607Q 0.36 tolerated(1) benign(0) TCGA-AZ-6606-01 16 31439379 31439379 C T COX6A2 Missense_Mutation p.R56H 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-AZ-6606-01 16 3274004 3274004 T C ZNF200 Missense_Mutation p.E359G 0.38 tolerated(0.24) benign(0.346) TCGA-AZ-6606-01 16 4431218 4431219 - A VASN Frame_Shift_Ins p.I115Nfs*4 0.32 TCGA-AZ-6606-01 16 50733460 50733460 G A NOD2 Silent p.L45L 0.31 TCGA-AZ-6606-01 16 50785658 50785658 C T CYLD Silent p.Y216Y 0.13 TCGA-AZ-6606-01 16 71416647 71416647 G A CALB2 Missense_Mutation p.R123K 0.44 tolerated(0.6) probably_damaging(0.932) TCGA-AZ-6606-01 16 8988953 8988953 C T USP7 Missense_Mutation p.V992M 0.33 deleterious(0) probably_damaging(0.993) TCGA-AZ-6606-01 17 10533510 10533510 G A MYH3 Nonsense_Mutation p.R1821* 0.36 TCGA-AZ-6606-01 17 16286016 16286016 A G UBB 3'UTR 0.38 TCGA-AZ-6606-01 17 21731754 21731754 G T UBBP4 3'Flank 0.08 TCGA-AZ-6606-01 17 27383211 27383211 C T PIPOX Missense_Mutation p.A354V 0.47 deleterious(0) possibly_damaging(0.472) TCGA-AZ-6606-01 17 29855636 29855636 A G RAB11FIP4 Splice_Site p.X499_splice 0.09 TCGA-AZ-6606-01 17 33491149 33491149 G A UNC45B Missense_Mutation p.R372H 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-6606-01 17 39296158 39296158 G C KRTAP4-6 Missense_Mutation p.C194W 0.46 deleterious(0) unknown(0) TCGA-AZ-6606-01 17 40282503 40282503 G A RAB5C Silent p.G39G 0.29 TCGA-AZ-6606-01 17 40939351 40939351 G A WNK4 Missense_Mutation p.R511H 0.32 deleterious(0) unknown(0) TCGA-AZ-6606-01 17 43037483 43037483 C A C1QL1 3'UTR 0.46 TCGA-AZ-6606-01 17 56573508 56573508 C T MTMR4 Silent p.G665G 0.23 TCGA-AZ-6606-01 17 5984316 5984316 G A WSCD1 Missense_Mutation p.R113H 0.25 tolerated(0.2) benign(0.189) TCGA-AZ-6606-01 17 72305659 72305659 G A DNAI2 Intron 0.29 TCGA-AZ-6606-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.72 tolerated(0.11) benign(0.308) TCGA-AZ-6606-01 17 8221888 8221888 A G ARHGEF15 Missense_Mutation p.I594V 0.33 tolerated(0.24) benign(0.1) TCGA-AZ-6606-01 18 24442252 24442252 T G AQP4 Missense_Mutation p.K114T 0.16 deleterious(0) probably_damaging(0.97) TCGA-AZ-6606-01 18 28991123 28991123 C T DSG4 Silent p.G708G 0.55 TCGA-AZ-6606-01 19 17303646 17303646 G A MYO9B Missense_Mutation p.R968Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-AZ-6606-01 19 18902068 18902068 T G COMP Missense_Mutation p.D4A 0.12 tolerated_low_confidence(0.54) benign(0) TCGA-AZ-6606-01 19 19165089 19165089 G A ARMC6 Missense_Mutation p.D328N 0.15 tolerated(0.33) benign(0.014) TCGA-AZ-6606-01 19 22375836 22375836 T C ZNF676 Missense_Mutation p.M38V 0.14 deleterious(0.05) benign(0.005) TCGA-AZ-6606-01 19 36365454 36365454 C T APLP1 Nonsense_Mutation p.R369* 0.57 TCGA-AZ-6606-01 19 38379222 38379222 A C WDR87 Missense_Mutation p.L1658V 0.11 benign(0.232) TCGA-AZ-6606-01 19 40405969 40405969 G A FCGBP Missense_Mutation p.P1626L 0.11 unknown(0) TCGA-AZ-6606-01 19 42848973 42848973 C T MEGF8 Silent p.S695S 0.63 TCGA-AZ-6606-01 19 4493761 4493761 C T HDGFRP2 Missense_Mutation p.P247L 0.12 tolerated(0.07) unknown(0) TCGA-AZ-6606-01 19 46823729 46823729 C A HIF3A Missense_Mutation p.S352Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-AZ-6606-01 19 47503612 47503612 T C ARHGAP35 Silent p.N1389N 0.11 TCGA-AZ-6606-01 19 49259640 49259640 C T FGF21 Silent p.L49L 0.31 TCGA-AZ-6606-01 19 50958893 50958893 T C MYBPC2 Missense_Mutation p.L777P 0.48 tolerated(0.21) possibly_damaging(0.633) TCGA-AZ-6606-01 19 52090660 52090660 G T ZNF175 Missense_Mutation p.R359I 0.15 deleterious(0.04) probably_damaging(0.93) TCGA-AZ-6606-01 19 52090885 52090885 T C ZNF175 Missense_Mutation p.L434P 0.16 deleterious(0) probably_damaging(1) TCGA-AZ-6606-01 19 53086902 53086902 C T ZNF701 3'UTR 0.12 TCGA-AZ-6606-01 19 53678736 53678736 T C ZNF665 Missense_Mutation p.D35G 0.11 deleterious(0.01) possibly_damaging(0.575) TCGA-AZ-6606-01 19 53994152 53994152 A G ZNF813 Silent p.K222K 0.09 TCGA-AZ-6606-01 19 54188332 54188332 G A MIR515-2 RNA 0.05 TCGA-AZ-6606-01 19 54567026 54567026 G A VSTM1 Silent p.T2T 0.48 TCGA-AZ-6606-01 19 55512237 55512237 A G NLRP2 Missense_Mutation p.R1054G 0.09 deleterious(0.01) possibly_damaging(0.7) TCGA-AZ-6606-01 19 55693154 55693154 C T PTPRH Missense_Mutation p.A1106T 0.49 benign(0.388) TCGA-AZ-6606-01 19 6454708 6454708 G A SLC25A23 Silent p.C168C 0.14 TCGA-AZ-6606-01 19 8808431 8808431 G A ACTL9 Silent p.P207P 0.61 TCGA-AZ-6606-01 19 9801747 9801747 T G ZNF812 Missense_Mutation p.K144N 0.11 tolerated(0.07) benign(0.012) TCGA-AZ-6606-01 1 11596429 11596429 G A PTCHD2 Missense_Mutation p.V1289M 0.40 deleterious(0) probably_damaging(0.988) TCGA-AZ-6606-01 1 12030874 12030874 G A PLOD1 Splice_Site p.X634_splice 0.42 TCGA-AZ-6606-01 1 12416134 12416134 G C VPS13D Silent p.L3286L 0.13 TCGA-AZ-6606-01 1 12921400 12921400 G T PRAMEF2 Silent p.L397L 0.23 TCGA-AZ-6606-01 1 152975586 152975586 G T SPRR3 Missense_Mutation p.Q30H 0.24 deleterious(0.04) unknown(0) TCGA-AZ-6606-01 1 154920805 154920805 G A PBXIP1 Silent p.D149D 0.55 TCGA-AZ-6606-01 1 155005958 155005958 G A DCST2 Missense_Mutation p.R74C 0.67 tolerated(0.2) possibly_damaging(0.513) TCGA-AZ-6606-01 1 158548946 158548946 C T OR10X1 Silent p.E248E 0.14 TCGA-AZ-6606-01 1 158583611 158583611 G A SPTA1 Missense_Mutation p.R2297W 0.08 deleterious(0) possibly_damaging(0.667) TCGA-AZ-6606-01 1 196684872 196684872 G C CFH Missense_Mutation p.G557R 0.21 deleterious(0) probably_damaging(0.981) TCGA-AZ-6606-01 1 208072346 208072346 G T CD34 Nonsense_Mutation p.S163* 0.10 TCGA-AZ-6606-01 1 209956615 209956615 C T C1orf74 Missense_Mutation p.R122H 0.16 deleterious(0.02) benign(0.004) TCGA-AZ-6606-01 1 220284156 220284156 T C IARS2 Silent p.N452N 0.09 TCGA-AZ-6606-01 1 37270541 37270541 G A GRIK3 Intron 0.22 TCGA-AZ-6606-01 1 47614392 47614392 G A CYP4A22 Missense_Mutation p.V495M 0.35 deleterious(0) probably_damaging(0.99) TCGA-AZ-6606-01 1 50572048 50572048 A C ELAVL4 Silent p.R15R 0.39 TCGA-AZ-6606-01 1 55563368 55563368 C G USP24 Missense_Mutation p.C1873S 0.16 deleterious(0.03) possibly_damaging(0.511) TCGA-AZ-6606-01 1 57538023 57538023 C T DAB1 Missense_Mutation p.R124Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-AZ-6606-01 1 8390943 8390943 G A SLC45A1 Missense_Mutation p.G464R 0.59 tolerated(0.52) benign(0.006) TCGA-AZ-6606-01 20 25443035 25443035 C A NINL Missense_Mutation p.R1189L 0.72 tolerated(0.72) benign(0.018) TCGA-AZ-6606-01 20 30522535 30522535 C T TTLL9 Missense_Mutation p.A283V 0.26 tolerated(0.53) benign(0.015) TCGA-AZ-6606-01 20 35651205 35651205 A G RBL1 Silent p.L803L 0.10 TCGA-AZ-6606-01 20 37357016 37357016 G A SLC32A1 Missense_Mutation p.A438T 0.36 tolerated(0.46) benign(0.044) TCGA-AZ-6606-01 20 39801406 39801406 G A PLCG1 Silent p.T1056T 0.32 TCGA-AZ-6606-01 20 4680289 4680289 C T PRNP Silent p.F141F 0.67 TCGA-AZ-6606-01 20 51870707 51870707 C T TSHZ2 Missense_Mutation p.T237M 0.23 deleterious(0) probably_damaging(0.982) TCGA-AZ-6606-01 20 57290229 57290229 G A NPEPL1 Silent p.E473E 0.11 TCGA-AZ-6606-01 20 7894923 7894923 G A HAO1 Missense_Mutation p.R145W 0.16 deleterious(0.01) possibly_damaging(0.762) TCGA-AZ-6606-01 21 10862988 10862988 T G IGHV1OR21-1 Missense_Mutation p.M95R 0.15 tolerated(0.08) benign(0.004) TCGA-AZ-6606-01 21 16337367 16337367 C T NRIP1 Silent p.A1049A 0.32 TCGA-AZ-6606-01 21 31986127 31986127 C T KRTAP6-1 Missense_Mutation p.G33S 0.12 unknown(0) TCGA-AZ-6606-01 21 33954543 33954543 C T AP000275.65 Silent p.A283A 0.32 TCGA-AZ-6606-01 21 46918193 46918193 C T COL18A1 Intron 0.31 TCGA-AZ-6606-01 22 19965082 19965082 G A ARVCF Missense_Mutation p.R576W 0.68 deleterious(0) probably_damaging(1) TCGA-AZ-6606-01 22 24300818 24300818 C T GSTT2B Missense_Mutation p.A91T 0.56 tolerated(0.36) benign(0.036) TCGA-AZ-6606-01 22 32477866 32477866 C T SLC5A1 Missense_Mutation p.S164L 0.16 deleterious(0) possibly_damaging(0.853) TCGA-AZ-6606-01 22 43831125 43831125 C T MPPED1 Silent p.N132N 0.71 TCGA-AZ-6606-01 22 45683152 45683152 T C UPK3A Missense_Mutation p.V103A 0.09 tolerated(1) benign(0.002) TCGA-AZ-6606-01 22 46654627 46654627 C A PKDREJ Silent p.P1531P 0.40 TCGA-AZ-6606-01 2 112539948 112539948 T C ANAPC1 Missense_Mutation p.K1734E 0.28 deleterious(0.02) possibly_damaging(0.888) TCGA-AZ-6606-01 2 11586555 11586555 C A E2F6 3'UTR 0.38 TCGA-AZ-6606-01 2 116485497 116485497 G C DPP10 Missense_Mutation p.D232H 0.07 deleterious(0) probably_damaging(1) TCGA-AZ-6606-01 2 121746682 121746682 C T GLI2 Silent p.D1064D 0.46 TCGA-AZ-6606-01 2 128872726 128872726 C T UGGT1 Missense_Mutation p.S242F 0.36 deleterious(0) probably_damaging(0.911) TCGA-AZ-6606-01 2 131985865 131985865 C A POTEE Missense_Mutation p.S322R 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.637) TCGA-AZ-6606-01 2 152322557 152322557 G A RIF1 Missense_Mutation p.A2175T 0.09 deleterious(0) probably_damaging(0.959) TCGA-AZ-6606-01 2 152534541 152534541 G A NEB Missense_Mutation p.T1139M 0.34 possibly_damaging(0.894) TCGA-AZ-6606-01 2 155295173 155295173 G T GALNT13 Nonsense_Mutation p.G489* 0.36 TCGA-AZ-6606-01 2 172582175 172582175 C T DYNC1I2 Missense_Mutation p.P187S 0.34 tolerated(0.94) benign(0.001) TCGA-AZ-6606-01 2 210682635 210682635 C T UNC80 Missense_Mutation p.P551L 0.42 probably_damaging(0.995) TCGA-AZ-6606-01 2 220405189 220405189 C T CHPF Missense_Mutation p.R415H 0.19 tolerated(0.27) benign(0.005) TCGA-AZ-6606-01 2 223065931 223065931 C T PAX3 Missense_Mutation p.D494N 0.43 tolerated_low_confidence(0.36) benign(0) TCGA-AZ-6606-01 2 223919170 223919170 C T KCNE4 3'UTR 0.19 TCGA-AZ-6606-01 2 233744375 233744375 C T NGEF Missense_Mutation p.E653K 0.33 tolerated(0.05) probably_damaging(1) TCGA-AZ-6606-01 2 27301894 27301894 G A EMILIN1 5'UTR 0.52 TCGA-AZ-6606-01 2 54045102 54045102 A G ERLEC1 Missense_Mutation p.N483S 0.36 tolerated_low_confidence(0.67) benign(0.005) TCGA-AZ-6606-01 2 61522322 61522322 C G USP34 Missense_Mutation p.R1453T 0.29 tolerated(0.18) benign(0.004) TCGA-AZ-6606-01 2 65454897 65454897 C T ACTR2 5'Flank 0.56 TCGA-AZ-6606-01 2 73144042 73144042 C T EMX1 5'Flank 0.22 TCGA-AZ-6606-01 2 97526703 97526703 C T SEMA4C Missense_Mutation p.R721Q 0.39 tolerated(0.7) benign(0.001) TCGA-AZ-6606-01 3 109136583 109136583 C T RP11-702L6.4 RNA 0.50 TCGA-AZ-6606-01 3 135864079 135864079 T C PPP2R3A 3'UTR 0.15 TCGA-AZ-6606-01 3 173997173 173997173 C T NLGN1 Missense_Mutation p.T461M 0.44 deleterious(0) probably_damaging(1) TCGA-AZ-6606-01 3 196754635 196754636 - CTGGA MFI2 Frame_Shift_Ins p.L66Sfs*28 0.43 TCGA-AZ-6606-01 3 53766910 53766910 A G CACNA1D Missense_Mutation p.I868V 0.08 tolerated(0.07) benign(0.047) TCGA-AZ-6606-01 4 134073896 134073896 C G PCDH10 Missense_Mutation p.I867M 0.39 tolerated(0.07) possibly_damaging(0.671) TCGA-AZ-6606-01 4 146059041 146059041 A G OTUD4 Silent p.H897H 0.08 TCGA-AZ-6606-01 4 166996084 166996084 C T TLL1 Missense_Mutation p.T748M 0.40 deleterious(0.04) possibly_damaging(0.626) TCGA-AZ-6606-01 4 177084327 177084327 G A WDR17 Missense_Mutation p.R982H 0.25 deleterious(0) probably_damaging(0.997) TCGA-AZ-6606-01 4 184930790 184930790 G A STOX2 Missense_Mutation p.G267R 0.41 deleterious(0.01) probably_damaging(1) TCGA-AZ-6606-01 4 23803449 23803449 C T PPARGC1A Missense_Mutation p.E733K 0.39 tolerated(0.4) unknown(0) TCGA-AZ-6606-01 4 71509315 71509315 G A ENAM Silent p.P724P 0.28 TCGA-AZ-6606-01 4 7774662 7774662 C T AFAP1 Missense_Mutation p.R713H 0.52 deleterious(0) probably_damaging(0.994) TCGA-AZ-6606-01 4 8608524 8608524 C T CPZ Nonsense_Mutation p.R323* 0.09 TCGA-AZ-6606-01 5 112174028 112174028 C - APC Frame_Shift_Del p.H913Ifs*3 0.23 TCGA-AZ-6606-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.51 TCGA-AZ-6606-01 5 118324137 118324137 G A DTWD2 Nonsense_Mutation p.Q24* 0.32 TCGA-AZ-6606-01 5 1338987 1338987 C T CLPTM1L Missense_Mutation p.R196Q 0.14 tolerated(0.11) benign(0.183) TCGA-AZ-6606-01 5 140231244 140231244 C A PCDHA9 Intron 0.32 TCGA-AZ-6606-01 5 140474744 140474744 C T PCDHB2 Missense_Mutation p.R124W 0.25 tolerated_low_confidence(0.19) benign(0.002) TCGA-AZ-6606-01 5 140553904 140553904 G A PCDHB7 Silent p.P496P 0.31 TCGA-AZ-6606-01 5 140769656 140769656 C T PCDHGB4 Silent p.S735S 0.29 TCGA-AZ-6606-01 5 140783184 140783184 G A PCDHGA9 Missense_Mutation p.R222H 0.19 tolerated_low_confidence(0.14) benign(0.411) TCGA-AZ-6606-01 5 156593103 156593103 C T FAM71B Missense_Mutation p.G26E 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6606-01 5 175511970 175511970 G A FAM153B Intron 0.09 TCGA-AZ-6606-01 5 179297323 179297323 C T TBC1D9B Missense_Mutation p.R886H 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-6606-01 5 32090055 32090055 G A PDZD2 Silent p.L2167L 0.18 TCGA-AZ-6606-01 5 35910613 35910613 C T CAPSL Missense_Mutation p.R57Q 0.37 deleterious(0.03) benign(0.055) TCGA-AZ-6606-01 5 42689025 42689025 G A GHR Missense_Mutation p.R57H 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-6606-01 5 77004070 77004070 C T TBCA Silent p.K52K 0.46 TCGA-AZ-6606-01 5 98217707 98217708 CT - CHD1 Frame_Shift_Del p.V947Tfs*15 0.18 TCGA-AZ-6606-01 6 117869319 117869319 G A DCBLD1 Intron 0.48 TCGA-AZ-6606-01 6 18188130 18188130 T C KDM1B Intron 0.08 TCGA-AZ-6606-01 6 26273380 26273380 T A HIST1H2BI Silent p.A59A 0.34 TCGA-AZ-6606-01 6 27834940 27834940 G T HIST1H1B Missense_Mutation p.A123D 0.09 deleterious(0.03) unknown(0) TCGA-AZ-6606-01 6 36995212 36995212 C T FGD2 Missense_Mutation p.S538F 0.39 deleterious(0.05) possibly_damaging(0.613) TCGA-AZ-6606-01 6 44272508 44272508 G A AARS2 Silent p.D542D 0.43 TCGA-AZ-6606-01 6 70048837 70048837 C T BAI3 Missense_Mutation p.T1073M 0.35 tolerated(0.07) probably_damaging(0.998) TCGA-AZ-6606-01 6 73017057 73017057 G A RIMS1 Missense_Mutation p.R1316H 0.35 tolerated(0.1) benign(0.028) TCGA-AZ-6606-01 7 21698465 21698465 G A DNAH11 Missense_Mutation p.R1720H 0.28 benign(0.028) TCGA-AZ-6606-01 7 41729723 41729723 C T INHBA Missense_Mutation p.G269E 0.36 tolerated_low_confidence(0.11) benign(0.084) TCGA-AZ-6606-01 7 51095845 51095845 T - COBL Frame_Shift_Del p.Q983Rfs*82 0.32 TCGA-AZ-6606-01 8 100115195 100115195 C T VPS13B Silent p.L143L 0.08 TCGA-AZ-6606-01 8 133984947 133984947 G C TG Missense_Mutation p.E2054Q 0.11 tolerated(0.17) benign(0.353) TCGA-AZ-6606-01 8 38250283 38250283 C A LETM2 Missense_Mutation p.P44T 0.24 deleterious(0.01) benign(0.045) TCGA-AZ-6606-01 8 7308705 7308705 C T SPAG11B Intron 0.13 TCGA-AZ-6606-01 8 91637911 91637911 G A TMEM64 Silent p.I377I 0.11 TCGA-AZ-6606-01 9 107666038 107666038 G A ABCA1 5'UTR 0.45 TCGA-AZ-6606-01 9 135703421 135703421 T C AK8 Missense_Mutation p.R179G 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-6606-01 9 137690279 137690279 C T COL5A1 Missense_Mutation p.P975L 0.43 unknown(0) TCGA-AZ-6606-01 9 27950552 27950552 A G LINGO2 Missense_Mutation p.S40P 0.18 deleterious(0.01) possibly_damaging(0.898) TCGA-AZ-6606-01 9 32631452 32631452 G A TAF1L Nonsense_Mutation p.R1376* 0.34 TCGA-AZ-6606-01 9 36677321 36677321 G C MELK Missense_Mutation p.S648T 0.13 tolerated(0.25) benign(0.124) TCGA-AZ-6606-01 9 72892343 72892343 A G SMC5 Silent p.A166A 0.10 TCGA-AZ-6606-01 9 94486427 94486427 G A ROR2 Silent p.N783N 0.40 TCGA-AZ-6606-01 X 12157067 12157067 G A FRMPD4 5'UTR 0.36 TCGA-AZ-6606-01 X 122551381 122551381 C A GRIA3 Silent p.G543G 0.72 TCGA-AZ-6606-01 X 129804166 129804166 C T ENOX2 Missense_Mutation p.R185H 0.82 deleterious(0) probably_damaging(1) TCGA-AZ-6606-01 X 130678703 130678703 G A OR13H1 Missense_Mutation p.R219Q 0.79 tolerated(0.23) benign(0.081) TCGA-AZ-6606-01 X 140995443 140995443 T C MAGEC1 Silent p.T751T 0.28 TCGA-AZ-6606-01 X 153716942 153716942 T C SLC10A3 Missense_Mutation p.E113G 0.08 tolerated(0.09) benign(0.26) TCGA-AZ-6606-01 X 1718518 1718518 C T AKAP17A Intron 0.11 TCGA-AZ-6606-01 X 68725830 68725830 G A FAM155B Silent p.P235P 0.23 TCGA-AZ-6606-01 X 75649528 75649528 G T MAGEE1 Missense_Mutation p.S402I 0.84 deleterious(0.01) benign(0.01) TCGA-AZ-6607-01 10 112364071 112364071 C T SMC3 3'UTR 0.29 TCGA-AZ-6607-01 10 135094836 135094836 G A TUBGCP2 Silent p.A866A 0.21 TCGA-AZ-6607-01 10 13717042 13717042 A G FRMD4A Missense_Mutation p.S374P 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-AZ-6607-01 10 50953514 50953514 T C OGDHL Missense_Mutation p.E502G 0.09 deleterious(0) probably_damaging(1) TCGA-AZ-6607-01 10 73544151 73544151 C T CDH23 Missense_Mutation p.R1831W 0.20 deleterious(0.02) probably_damaging(0.942) TCGA-AZ-6607-01 11 112070542 112070542 A G BCO2 Missense_Mutation p.H286R 0.14 deleterious(0) probably_damaging(0.997) TCGA-AZ-6607-01 11 117310117 117310117 C T DSCAML1 Missense_Mutation p.D1397N 0.16 deleterious(0.03) probably_damaging(1) TCGA-AZ-6607-01 11 44296931 44296931 G A ALX4 Silent p.A248A 0.27 TCGA-AZ-6607-01 11 55433002 55433002 C T OR4C6 Silent p.R120R 0.41 TCGA-AZ-6607-01 11 7111346 7111346 G A RBMXL2 Missense_Mutation p.R332Q 0.30 tolerated(0.14) benign(0.001) TCGA-AZ-6607-01 12 102590531 102590531 A C PARPBP 3'Flank 0.26 TCGA-AZ-6607-01 12 120660682 120660682 C T PXN Silent p.P159P 0.53 TCGA-AZ-6607-01 12 123950607 123950607 G A SNRNP35 Missense_Mutation p.D179N 0.23 deleterious(0) benign(0.03) TCGA-AZ-6607-01 12 132323237 132323237 C T MMP17 Missense_Mutation p.R125C 0.22 deleterious(0) probably_damaging(0.959) TCGA-AZ-6607-01 12 2016603 2016604 - A CACNA2D4 Intron 0.19 TCGA-AZ-6607-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.48 deleterious(0.04) probably_damaging(0.993) TCGA-AZ-6607-01 12 54350167 54350167 G A HOXC12 Silent p.S222S 0.43 TCGA-AZ-6607-01 12 55863867 55863867 G A OR6C70 Missense_Mutation p.S19F 0.40 deleterious_low_confidence(0.01) benign(0.005) TCGA-AZ-6607-01 12 7649571 7649571 C T CD163 Missense_Mutation p.V313I 0.26 tolerated(1) benign(0.005) TCGA-AZ-6607-01 12 8757844 8757844 C T AICDA Missense_Mutation p.A132T 0.23 deleterious(0.05) probably_damaging(0.941) TCGA-AZ-6607-01 13 19751395 19751395 C T TUBA3C Missense_Mutation p.R243Q 0.14 deleterious_low_confidence(0) possibly_damaging(0.706) TCGA-AZ-6607-01 13 24797943 24797943 T C SPATA13 Silent p.S292S 0.10 TCGA-AZ-6607-01 13 48986047 48986047 A G LPAR6 Silent p.N171N 0.26 TCGA-AZ-6607-01 13 76111658 76111658 A G COMMD6 Intron 0.35 TCGA-AZ-6607-01 14 106110954 106110954 C G IGHG2 Missense_Mutation p.Q58H 0.20 tolerated(0.07) possibly_damaging(0.908) TCGA-AZ-6607-01 15 23931757 23931757 C T NDN Missense_Mutation p.R203H 0.43 tolerated(0.17) benign(0.059) TCGA-AZ-6607-01 15 78290475 78290475 G T TBC1D2B 3'UTR 0.14 TCGA-AZ-6607-01 16 20856535 20856535 C T AC004381.6 Missense_Mutation p.P699L 0.36 tolerated(0.09) benign(0.288) TCGA-AZ-6607-01 16 28846974 28846974 T C ATXN2L Silent p.P930P 0.09 TCGA-AZ-6607-01 16 31418987 31418987 G A ITGAD Missense_Mutation p.G286R 0.41 deleterious(0.02) probably_damaging(0.986) TCGA-AZ-6607-01 16 48220952 48220952 G A ABCC11 Missense_Mutation p.R995W 0.16 deleterious(0.02) possibly_damaging(0.711) TCGA-AZ-6607-01 16 71212897 71212897 A C HYDIN Missense_Mutation p.I105M 0.17 possibly_damaging(0.658) TCGA-AZ-6607-01 16 89294376 89294376 C T ZNF778 Silent p.P532P 0.11 TCGA-AZ-6607-01 17 1657727 1657727 A G SERPINF2 Missense_Mutation p.S459G 0.09 tolerated(0.07) benign(0.005) TCGA-AZ-6607-01 17 27423864 27423864 G A MYO18A Nonsense_Mutation p.R1434* 0.27 TCGA-AZ-6607-01 17 39197554 39197554 G T KRTAP1-1 Silent p.T32T 0.23 TCGA-AZ-6607-01 17 47123707 47123707 A T IGF2BP1 Missense_Mutation p.K538I 0.20 deleterious(0) probably_damaging(0.983) TCGA-AZ-6607-01 17 73945296 73945296 A C ACOX1 Splice_Site p.X576_splice 0.33 TCGA-AZ-6607-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.50 deleterious(0) probably_damaging(0.997) TCGA-AZ-6607-01 18 29210956 29210956 G A B4GALT6 Missense_Mutation p.H248Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-AZ-6607-01 19 2399142 2399142 C T TMPRSS9 Silent p.H121H 0.29 TCGA-AZ-6607-01 19 37619725 37619725 G A ZNF420 Missense_Mutation p.G611D 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-AZ-6607-01 19 3771612 3771612 C T RAX2 Silent p.E43E 0.08 TCGA-AZ-6607-01 19 46806878 46806878 A G HIF3A Intron 0.08 TCGA-AZ-6607-01 19 4794246 4794246 A G FEM1A 3'UTR 0.30 TCGA-AZ-6607-01 19 49416750 49416750 A G NUCB1 Missense_Mutation p.K229R 0.09 tolerated(0.14) benign(0.03) TCGA-AZ-6607-01 19 9056340 9056340 C A MUC16 Missense_Mutation p.S10369I 0.08 benign(0.007) TCGA-AZ-6607-01 1 100472597 100472597 A T SLC35A3 Missense_Mutation p.Y117F 0.14 deleterious(0) probably_damaging(0.992) TCGA-AZ-6607-01 1 120483364 120483364 A G NOTCH2 Silent p.G999G 0.08 TCGA-AZ-6607-01 1 175092741 175092741 C T TNN Silent p.H952H 0.09 TCGA-AZ-6607-01 1 196394993 196394993 T A KCNT2 Silent p.L370L 0.17 TCGA-AZ-6607-01 1 201752735 201752735 A T NAV1 Silent p.S853S 0.19 TCGA-AZ-6607-01 1 201777277 201777277 A G NAV1 Missense_Mutation p.E1282G 0.11 deleterious(0.04) benign(0.021) TCGA-AZ-6607-01 1 235747136 235747136 C T GNG4 Translation_Start_Site p.M1? 0.25 tolerated_low_confidence(0.06) probably_damaging(0.914) TCGA-AZ-6607-01 1 248652231 248652231 G A OR2T5 Silent p.S114S 0.19 TCGA-AZ-6607-01 1 47609465 47609465 G A CYP4A22 Missense_Mutation p.D223N 0.14 tolerated(0.2) benign(0.119) TCGA-AZ-6607-01 1 6659338 6659338 G A KLHL21 Missense_Mutation p.T399I 0.09 tolerated(0.42) benign(0.001) TCGA-AZ-6607-01 1 7833556 7833556 A C VAMP3 Missense_Mutation p.Q19H 0.14 deleterious(0) probably_damaging(0.968) TCGA-AZ-6607-01 20 47683764 47683764 G A CSE1L Missense_Mutation p.E172K 0.15 deleterious(0) probably_damaging(1) TCGA-AZ-6607-01 20 50225137 50225137 C T ATP9A Missense_Mutation p.V889M 0.23 deleterious(0) benign(0.291) TCGA-AZ-6607-01 20 62038203 62038203 A G KCNQ2 Missense_Mutation p.F805L 0.11 deleterious(0) probably_damaging(0.999) TCGA-AZ-6607-01 20 62421306 62421306 G A ZBTB46 Nonsense_Mutation p.R269* 0.27 TCGA-AZ-6607-01 21 35895847 35895847 T A RCAN1 Missense_Mutation p.L138F 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-AZ-6607-01 21 46321510 46321510 T C ITGB2 Missense_Mutation p.N213S 0.11 tolerated(0.09) benign(0.399) TCGA-AZ-6607-01 21 47703581 47703581 C T MCM3AP Missense_Mutation p.R464H 0.13 deleterious(0) probably_damaging(0.997) TCGA-AZ-6607-01 22 36894117 36894117 A G FOXRED2 Missense_Mutation p.S435P 0.11 tolerated(0.2) benign(0.122) TCGA-AZ-6607-01 2 12880828 12880828 G A TRIB2 Missense_Mutation p.V314I 0.32 tolerated(0.33) benign(0.001) TCGA-AZ-6607-01 2 152466495 152466495 T C NEB Missense_Mutation p.K4053R 0.33 possibly_damaging(0.705) TCGA-AZ-6607-01 2 179611628 179611628 A G TTN Intron 0.07 TCGA-AZ-6607-01 2 21229550 21229550 G A APOB Missense_Mutation p.T3397I 0.22 possibly_damaging(0.616) TCGA-AZ-6607-01 2 237076539 237076539 A G GBX2 Missense_Mutation p.S26P 0.09 deleterious(0) benign(0.363) TCGA-AZ-6607-01 2 68274436 68274436 C T C1D Missense_Mutation p.G3S 0.32 tolerated(0.9) benign(0.001) TCGA-AZ-6607-01 2 74783198 74783198 G A DOK1 Missense_Mutation p.R211Q 0.23 deleterious(0.03) possibly_damaging(0.506) TCGA-AZ-6607-01 3 119306595 119306595 G T ADPRH Missense_Mutation p.G315V 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-6607-01 3 184429511 184429511 C T MAGEF1 Silent p.S33S 0.41 TCGA-AZ-6607-01 3 33877750 33877750 A C PDCD6IP Missense_Mutation p.K355T 0.10 tolerated(0.17) benign(0.331) TCGA-AZ-6607-01 3 38768468 38768468 C - SCN10A Frame_Shift_Del p.E906Rfs*2 0.15 TCGA-AZ-6607-01 3 73112257 73112257 C T EBLN2 3'UTR 0.20 TCGA-AZ-6607-01 3 97596084 97596084 G A CRYBG3 Missense_Mutation p.A68T 0.49 tolerated_low_confidence(1) benign(0.001) TCGA-AZ-6607-01 4 119951939 119951939 G A SYNPO2 Missense_Mutation p.R670Q 0.24 deleterious(0) probably_damaging(1) TCGA-AZ-6607-01 4 99027191 99027191 A G STPG2 Silent p.N175N 0.31 TCGA-AZ-6607-01 5 127477545 127477545 A C SLC12A2 Missense_Mutation p.T549P 0.18 deleterious(0) probably_damaging(0.968) TCGA-AZ-6607-01 5 180377193 180377193 A G BTNL8 Silent p.G384G 0.07 TCGA-AZ-6607-01 5 180432791 180432791 G A BTNL3 Silent p.L440L 0.53 TCGA-AZ-6607-01 5 32057763 32057763 G A PDZD2 Missense_Mutation p.D635N 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-6607-01 5 38932041 38932041 G T OSMR Missense_Mutation p.V757F 0.53 deleterious(0.02) benign(0.299) TCGA-AZ-6607-01 6 127797254 127797254 G T SOGA3 Missense_Mutation p.S639R 0.09 tolerated(0.07) benign(0.057) TCGA-AZ-6607-01 6 135290431 135290431 G A HBS1L Nonsense_Mutation p.R615* 0.18 TCGA-AZ-6607-01 6 144507951 144507951 A G STX11 Missense_Mutation p.K63E 0.10 deleterious(0.04) benign(0.209) TCGA-AZ-6607-01 6 51771037 51771037 T C PKHD1 Missense_Mutation p.I2262V 0.13 tolerated(0.11) benign(0.232) TCGA-AZ-6607-01 7 100201069 100201069 G A PCOLCE Missense_Mutation p.G38R 0.38 deleterious(0) probably_damaging(1) TCGA-AZ-6607-01 7 127979804 127979804 T C RBM28 Missense_Mutation p.M54V 0.27 tolerated(0.14) probably_damaging(0.983) TCGA-AZ-6607-01 7 38803102 38803102 G A VPS41 Missense_Mutation p.L459F 0.14 tolerated(0.7) benign(0.001) TCGA-AZ-6607-01 7 44579747 44579747 G A NPC1L1 Silent p.T83T 0.47 TCGA-AZ-6607-01 7 92015867 92015867 A T ANKIB1 Missense_Mutation p.K554N 0.14 tolerated(0.05) probably_damaging(0.998) TCGA-AZ-6607-01 9 109688168 109688168 C A ZNF462 Missense_Mutation p.Q659K 0.35 probably_damaging(0.949) TCGA-AZ-6607-01 9 124966760 124966760 C T LHX6 3'UTR 0.25 TCGA-AZ-6607-01 9 131832622 131832622 C T FAM73B Missense_Mutation p.R558W 0.40 tolerated(0.17) probably_damaging(0.986) TCGA-AZ-6607-01 9 91617248 91617248 A G S1PR3 Missense_Mutation p.N378S 0.18 deleterious_low_confidence(0.02) benign(0) TCGA-AZ-6607-01 X 101581392 101581392 C A NXF2 Silent p.G615G 0.37 TCGA-AZ-6607-01 X 150348937 150348937 C T GPR50 Silent p.Y294Y 0.81 TCGA-AZ-6607-01 X 18668660 18668660 G A CDKL5 Silent p.P976P 0.12 TCGA-AZ-6607-01 X 69282936 69282936 T C OTUD6A Missense_Mutation p.F188L 0.10 deleterious(0.02) possibly_damaging(0.766) TCGA-AZ-6608-01 10 102305799 102305799 A G HIF1AN Missense_Mutation p.M275V 0.50 tolerated(0.71) benign(0.318) TCGA-AZ-6608-01 10 19896791 19896791 C T MALRD1 Silent p.A1389A 0.16 TCGA-AZ-6608-01 10 28343103 28343103 T C MPP7 Missense_Mutation p.K541R 0.34 tolerated(0.47) possibly_damaging(0.656) TCGA-AZ-6608-01 10 33502215 33502215 T A NRP1 Intron 0.24 TCGA-AZ-6608-01 10 69948714 69948714 G A MYPN Missense_Mutation p.R919H 0.65 deleterious(0) probably_damaging(0.999) TCGA-AZ-6608-01 10 81275665 81275665 A C EIF5AL1 3'UTR 0.34 TCGA-AZ-6608-01 10 95721264 95721264 A T PIPSL RNA 0.46 TCGA-AZ-6608-01 11 108302548 108302548 T C C11orf65 Silent p.Q33Q 0.47 TCGA-AZ-6608-01 11 110561269 110561272 CCTG - ARHGAP20 Splice_Site p.X62_splice 0.15 TCGA-AZ-6608-01 11 117115162 117115162 A G RNF214 Missense_Mutation p.D227G 0.18 tolerated(0.43) benign(0.002) TCGA-AZ-6608-01 11 124761327 124761327 G A ROBO4 Missense_Mutation p.R606C 0.43 tolerated(0.19) benign(0.003) TCGA-AZ-6608-01 11 17615605 17615605 G T OTOG Silent p.A1112A 0.23 TCGA-AZ-6608-01 11 18955441 18955441 G A MRGPRX1 Silent p.D297D 0.47 TCGA-AZ-6608-01 11 30921903 30921903 T A DCDC1 Silent p.L1548L 0.42 TCGA-AZ-6608-01 11 36598057 36598057 A C RAG1 3'UTR 0.24 TCGA-AZ-6608-01 11 47494719 47494719 C T CELF1 Silent p.L444L 0.12 TCGA-AZ-6608-01 11 57317560 57317560 G T SMTNL1 Missense_Mutation p.G505V 0.49 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 11 5776562 5776562 G A OR52N4 Missense_Mutation p.A198T 0.49 tolerated(0.35) benign(0.012) TCGA-AZ-6608-01 11 59596905 59596905 A G GIF 3'UTR 0.47 TCGA-AZ-6608-01 11 60531363 60531363 A G MS4A15 Missense_Mutation p.R53G 0.09 tolerated(0.5) benign(0.006) TCGA-AZ-6608-01 11 61117783 61117783 A G CYB561A3 3'UTR 0.21 TCGA-AZ-6608-01 11 63666289 63666289 G A MARK2 Missense_Mutation p.R153Q 0.21 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 11 63999372 63999373 - G DNAJC4 Frame_Shift_Ins p.V41Gfs*8 0.21 TCGA-AZ-6608-01 12 10010193 10010193 C G CLEC2B Missense_Mutation p.W39C 0.47 deleterious(0) possibly_damaging(0.904) TCGA-AZ-6608-01 12 108010888 108010888 A G BTBD11 Missense_Mutation p.K675R 0.49 tolerated(0.22) possibly_damaging(0.534) TCGA-AZ-6608-01 12 110771877 110771877 G C ATP2A2 Missense_Mutation p.E450Q 0.26 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 12 114836456 114836456 G A TBX5 Silent p.T144T 0.45 TCGA-AZ-6608-01 12 13715638 13715638 G C GRIN2B 3'UTR 0.47 TCGA-AZ-6608-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.40 deleterious(0.04) possibly_damaging(0.506) TCGA-AZ-6608-01 12 394516 394516 T C KDM5A 3'UTR 0.09 TCGA-AZ-6608-01 12 40012619 40012619 T A ABCD2 Missense_Mutation p.T267S 0.36 tolerated(0.23) possibly_damaging(0.842) TCGA-AZ-6608-01 12 45269016 45269016 A G NELL2 Missense_Mutation p.L109P 0.09 tolerated(0.07) possibly_damaging(0.819) TCGA-AZ-6608-01 12 57921729 57921729 C T MBD6 Missense_Mutation p.P779S 0.14 deleterious_low_confidence(0.04) unknown(0) TCGA-AZ-6608-01 12 72666570 72666570 C T TRHDE Silent p.D4D 0.27 TCGA-AZ-6608-01 12 73014980 73014980 A T TRHDE Missense_Mutation p.Q809H 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-AZ-6608-01 12 80328639 80328639 C T PPP1R12A Missense_Mutation p.E25K 0.50 deleterious(0) probably_damaging(0.978) TCGA-AZ-6608-01 12 85450311 85450312 - A LRRIQ1 Frame_Shift_Ins p.I583Dfs*18 0.30 TCGA-AZ-6608-01 12 862801 862802 - C WNK1 Frame_Shift_Ins p.K26Qfs*51 0.35 TCGA-AZ-6608-01 13 103330600 103330600 C T TPP2 Silent p.T1228T 0.59 TCGA-AZ-6608-01 13 25016097 25016097 C G PARP4 Missense_Mutation p.E1185Q 0.11 deleterious(0) benign(0.119) TCGA-AZ-6608-01 13 36776121 36776121 G A SOHLH2 Missense_Mutation p.T130M 0.21 tolerated(0.13) benign(0) TCGA-AZ-6608-01 13 73636669 73636669 G T KLF5 Missense_Mutation p.S311I 0.51 deleterious(0) probably_damaging(0.944) TCGA-AZ-6608-01 13 77785402 77785414 TTATCAGAAGGCA - MYCBP2 Frame_Shift_Del p.C1064Ifs*31 0.09 TCGA-AZ-6608-01 14 24976687 24976687 G A CMA1 Silent p.C28C 0.32 TCGA-AZ-6608-01 14 59819251 59819251 A G DAAM1 Missense_Mutation p.K733R 0.36 deleterious(0.04) probably_damaging(0.987) TCGA-AZ-6608-01 14 68249809 68249809 G A ZFYVE26 Missense_Mutation p.R1354W 0.59 deleterious(0) possibly_damaging(0.629) TCGA-AZ-6608-01 14 75593563 75593563 T C NEK9 Missense_Mutation p.E21G 0.08 deleterious_low_confidence(0.01) benign(0.018) TCGA-AZ-6608-01 14 96789054 96789054 A T ATG2B Missense_Mutation p.N853K 0.39 tolerated(0.09) benign(0.034) TCGA-AZ-6608-01 15 101436271 101436271 G C ALDH1A3 Intron 0.39 TCGA-AZ-6608-01 15 39881277 39881277 A T THBS1 Missense_Mutation p.D588V 0.30 deleterious(0.02) benign(0.423) TCGA-AZ-6608-01 15 43441247 43441247 G A TMEM62 Missense_Mutation p.C255Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-AZ-6608-01 15 57745950 57745950 A T CGNL1 Silent p.S708S 0.33 TCGA-AZ-6608-01 15 68643006 68643006 C T ITGA11 Missense_Mutation p.A337T 0.49 deleterious(0.01) probably_damaging(1) TCGA-AZ-6608-01 15 91424244 91424244 C T FURIN Missense_Mutation p.T589I 0.55 tolerated(0.18) benign(0.074) TCGA-AZ-6608-01 16 27079343 27079343 T C C16orf82 RNA 0.10 TCGA-AZ-6608-01 16 31289409 31289409 C T ITGAM Silent p.N445N 0.20 TCGA-AZ-6608-01 16 3639109 3639109 C A SLX4 Silent p.L1510L 0.27 TCGA-AZ-6608-01 16 7703845 7703845 C T RBFOX1 Silent p.T282T 0.22 TCGA-AZ-6608-01 17 10427914 10427914 G A MYH2 Missense_Mutation p.R1682C 0.46 deleterious(0) possibly_damaging(0.458) TCGA-AZ-6608-01 17 34074068 34074068 G A GAS2L2 Missense_Mutation p.T351M 0.60 tolerated(0.19) benign(0.002) TCGA-AZ-6608-01 17 40010128 40010128 C T KLHL11 Missense_Mutation p.R664Q 0.32 tolerated(0.27) benign(0.04) TCGA-AZ-6608-01 17 41582112 41582112 T A DHX8 Silent p.S549S 0.29 TCGA-AZ-6608-01 17 57350254 57350254 A G GDPD1 Intron 0.66 TCGA-AZ-6608-01 17 61513068 61513068 A T CYB561 Missense_Mutation p.F129Y 0.28 deleterious(0.01) possibly_damaging(0.811) TCGA-AZ-6608-01 17 66989217 66989217 A C ABCA9 Silent p.P1188P 0.28 TCGA-AZ-6608-01 17 72537634 72537634 T A CD300C 3'UTR 0.25 TCGA-AZ-6608-01 17 73647254 73647254 T C RECQL5 Intron 0.67 TCGA-AZ-6608-01 17 74765885 74765885 A G MFSD11 Missense_Mutation p.K269R 0.26 tolerated(0.69) benign(0) TCGA-AZ-6608-01 17 7578474 7578475 - G TP53 Frame_Shift_Ins p.P153Afs*28 0.33 TCGA-AZ-6608-01 17 7950308 7950308 T C ALOX15B Silent p.P457P 0.77 TCGA-AZ-6608-01 17 80923624 80923624 T A B3GNTL1 Splice_Site p.X169_splice 0.20 TCGA-AZ-6608-01 18 50831999 50831999 A T DCC Missense_Mutation p.I655F 0.30 deleterious(0) probably_damaging(0.998) TCGA-AZ-6608-01 18 67425023 67425023 T C DOK6 Missense_Mutation p.L257S 0.12 tolerated(0.07) benign(0.086) TCGA-AZ-6608-01 18 67857775 67857775 T A RTTN Silent p.T396T 0.26 TCGA-AZ-6608-01 19 15566926 15566926 G C RASAL3 Missense_Mutation p.I570M 0.27 deleterious(0.03) possibly_damaging(0.78) TCGA-AZ-6608-01 19 15769118 15769118 A G CYP4F3 Missense_Mutation p.E387G 0.10 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 19 17947960 17947960 G A JAK3 Silent p.H588H 0.52 TCGA-AZ-6608-01 19 18576341 18576341 T G ELL Missense_Mutation p.K117T 0.60 deleterious(0) probably_damaging(0.993) TCGA-AZ-6608-01 19 22574727 22574727 T A ZNF98 Missense_Mutation p.E437V 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-AZ-6608-01 19 22847658 22847658 A T ZNF492 Missense_Mutation p.E396V 0.35 deleterious(0) probably_damaging(0.937) TCGA-AZ-6608-01 19 36884400 36884400 G C ZFP82 Missense_Mutation p.P281R 0.34 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 19 38378490 38378490 C T WDR87 Missense_Mutation p.V1902M 0.55 possibly_damaging(0.809) TCGA-AZ-6608-01 19 42600068 42600068 A G POU2F2 Missense_Mutation p.L226P 0.12 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 19 4323176 4323176 C A FSD1 Silent p.V411V 0.50 TCGA-AZ-6608-01 19 43414859 43414859 C T PSG6 Silent p.Q193Q 0.21 TCGA-AZ-6608-01 19 50310405 50310405 T C FUZ 3'UTR 0.10 TCGA-AZ-6608-01 19 53304590 53304590 T G ZNF28 Missense_Mutation p.N170H 0.70 deleterious(0.04) benign(0.241) TCGA-AZ-6608-01 19 53854983 53854983 A G ZNF845 Missense_Mutation p.E352G 0.14 deleterious(0.01) possibly_damaging(0.758) TCGA-AZ-6608-01 19 57792061 57792061 C T ZNF460 5'UTR 0.45 TCGA-AZ-6608-01 1 111440482 111440482 G A CD53 Missense_Mutation p.G186R 0.42 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 1 151751346 151751346 T C TDRKH Missense_Mutation p.E233G 0.62 tolerated(0.05) benign(0.014) TCGA-AZ-6608-01 1 156126225 156126225 A T SEMA4A Missense_Mutation p.S54C 0.63 deleterious(0.02) possibly_damaging(0.664) TCGA-AZ-6608-01 1 160249933 160249933 T A PEX19 Missense_Mutation p.E233V 0.66 deleterious(0) probably_damaging(0.994) TCGA-AZ-6608-01 1 171033310 171033310 T A MROH9 Missense_Mutation p.F805L 0.61 tolerated(0.31) benign(0.034) TCGA-AZ-6608-01 1 196621306 196621306 G A CFH Splice_Site p.X20_splice 0.29 TCGA-AZ-6608-01 1 197071176 197071176 C G ASPM Missense_Mutation p.R2402T 0.60 tolerated(0.15) benign(0.314) TCGA-AZ-6608-01 1 197411173 197411173 T A CRB1 Intron 0.68 TCGA-AZ-6608-01 1 22310248 22310248 G A CELA3B Missense_Mutation p.A142T 0.27 deleterious(0) possibly_damaging(0.881) TCGA-AZ-6608-01 1 228538550 228538550 C T OBSCN Missense_Mutation p.R7066W 0.55 probably_damaging(0.99) TCGA-AZ-6608-01 1 235850345 235850345 C G LYST Silent p.V3568V 0.37 TCGA-AZ-6608-01 1 237659872 237659872 T A RYR2 Missense_Mutation p.Y675N 0.54 probably_damaging(0.989) TCGA-AZ-6608-01 1 240637552 240637552 T A FMN2 3'UTR 0.31 TCGA-AZ-6608-01 1 247615175 247615175 A T OR2B11 Missense_Mutation p.L37Q 0.28 deleterious(0) benign(0.133) TCGA-AZ-6608-01 1 247921361 247921361 A T OR1C1 Nonsense_Mutation p.C116* 0.23 TCGA-AZ-6608-01 1 24977995 24977995 A C SRRM1 Missense_Mutation p.K206T 0.54 unknown(0) TCGA-AZ-6608-01 1 26606619 26606619 C G SH3BGRL3 5'UTR 0.33 TCGA-AZ-6608-01 1 39989342 39989342 C G BMP8A Intron 0.59 TCGA-AZ-6608-01 1 49100185 49100185 C T AGBL4 Missense_Mutation p.V311I 0.26 tolerated(0.38) benign(0.002) TCGA-AZ-6608-01 1 53692589 53692589 T C MAGOH 3'UTR 0.20 TCGA-AZ-6608-01 1 72748255 72748255 G T NEGR1 5'UTR 0.10 TCGA-AZ-6608-01 1 75707710 75707710 T A SLC44A5 Missense_Mutation p.T170S 0.36 tolerated(1) benign(0.001) TCGA-AZ-6608-01 1 9098908 9098908 G T SLC2A5 Silent p.L359L 0.24 TCGA-AZ-6608-01 20 2542545 2542545 T A TMC2 Missense_Mutation p.L148Q 0.24 tolerated(0.31) possibly_damaging(0.481) TCGA-AZ-6608-01 20 36965603 36965603 G A BPI 3'UTR 0.17 TCGA-AZ-6608-01 20 3903938 3903938 G A PANK2 Silent p.P570P 0.28 TCGA-AZ-6608-01 20 45354562 45354562 G A SLC2A10 Missense_Mutation p.R296H 0.33 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 20 47626900 47626900 A G ARFGEF2 Missense_Mutation p.N1239S 0.82 tolerated(1) benign(0.003) TCGA-AZ-6608-01 20 57769340 57769340 T C ZNF831 Missense_Mutation p.L1089P 0.20 tolerated(1) benign(0) TCGA-AZ-6608-01 20 61637384 61637384 G T BHLHE23 3'UTR 0.80 TCGA-AZ-6608-01 20 9624935 9624935 C T PAK7 Silent p.P14P 0.43 TCGA-AZ-6608-01 2 120020872 120020872 G A STEAP3 Silent p.L485L 0.31 TCGA-AZ-6608-01 2 141116515 141116515 A G LRP1B Missense_Mutation p.V3711A 0.23 benign(0.153) TCGA-AZ-6608-01 2 149854912 149854912 A T KIF5C Splice_Site p.X701_splice 0.54 TCGA-AZ-6608-01 2 152408306 152408306 A T NEB Silent p.T6630T 0.57 TCGA-AZ-6608-01 2 170804097 170804097 G C UBR3 Missense_Mutation p.G986R 0.22 deleterious(0.03) benign(0.36) TCGA-AZ-6608-01 2 178936681 178936681 T C PDE11A Missense_Mutation p.S162G 0.32 deleterious(0.03) possibly_damaging(0.483) TCGA-AZ-6608-01 2 179441118 179441118 C T TTN Silent p.P23247P 0.29 TCGA-AZ-6608-01 2 179487396 179487396 C A TTN Splice_Site p.X14971_splice 0.28 TCGA-AZ-6608-01 2 179659186 179659186 T A TTN Silent p.V446V 0.62 TCGA-AZ-6608-01 2 187627031 187627031 A T FAM171B Silent p.S654S 0.61 TCGA-AZ-6608-01 2 19553311 19553311 G C OSR1 Missense_Mutation p.L86V 0.09 tolerated(0.31) benign(0.036) TCGA-AZ-6608-01 2 207631682 207631682 G C FASTKD2 Missense_Mutation p.G89R 0.44 tolerated(0.51) benign(0.231) TCGA-AZ-6608-01 2 207631683 207631683 G T FASTKD2 Missense_Mutation p.G89V 0.45 tolerated(0.28) benign(0.007) TCGA-AZ-6608-01 2 220414517 220414517 T A TMEM198 Missense_Mutation p.Y342N 0.41 deleterious(0.01) possibly_damaging(0.485) TCGA-AZ-6608-01 2 233415118 233415118 C A EIF4E2 5'UTR 0.47 TCGA-AZ-6608-01 2 238274453 238274453 T G COL6A3 Missense_Mutation p.E1909A 0.19 benign(0.222) TCGA-AZ-6608-01 2 241991563 241991563 A C SNED1 Missense_Mutation p.H653P 0.55 deleterious(0.02) probably_damaging(0.998) TCGA-AZ-6608-01 2 242590511 242590511 T C ATG4B Missense_Mutation p.Y33H 0.67 tolerated(0.14) benign(0.248) TCGA-AZ-6608-01 2 33745621 33745621 T C RASGRP3 Missense_Mutation p.Y80H 0.58 tolerated(0.11) probably_damaging(0.949) TCGA-AZ-6608-01 2 65318199 65318199 C T RAB1A Missense_Mutation p.G69D 0.22 deleterious(0) probably_damaging(0.997) TCGA-AZ-6608-01 2 69002219 69002219 G A ARHGAP25 Intron 0.58 TCGA-AZ-6608-01 3 119528948 119528948 C T NR1I2 Missense_Mutation p.R119W 0.46 deleterious(0) probably_damaging(0.996) TCGA-AZ-6608-01 3 130095580 130095580 C T COL6A5 Missense_Mutation p.R190W 0.42 deleterious(0.01) probably_damaging(0.981) TCGA-AZ-6608-01 3 130116603 130116603 A - COL6A5 Frame_Shift_Del p.K1249Rfs*2 0.29 TCGA-AZ-6608-01 3 132172321 132172321 A T DNAJC13 Silent p.V239V 0.49 TCGA-AZ-6608-01 3 142261601 142261601 T A ATR Splice_Site p.X1120_splice 0.44 TCGA-AZ-6608-01 3 156868147 156868147 C T CCNL1 Missense_Mutation p.R233Q 0.34 deleterious(0.03) possibly_damaging(0.859) TCGA-AZ-6608-01 3 184060593 184060593 C T FAM131A Silent p.G190G 0.58 TCGA-AZ-6608-01 3 39144290 39144310 GTCTTCATATTGAACACCTCC - GORASP1 In_Frame_Del p.E70_T76del 0.37 TCGA-AZ-6608-01 3 44844324 44844324 G T KIF15 Missense_Mutation p.V510F 0.36 deleterious(0.05) possibly_damaging(0.815) TCGA-AZ-6608-01 3 56658672 56658672 C G FAM208A Splice_Site p.X1440_splice 0.40 TCGA-AZ-6608-01 3 88205870 88205870 A T C3orf38 3'UTR 0.60 TCGA-AZ-6608-01 4 156289642 156289642 A G MAP9 Intron 0.18 TCGA-AZ-6608-01 4 15987615 15987615 A T PROM1 Missense_Mutation p.F726I 0.25 deleterious(0.04) possibly_damaging(0.665) TCGA-AZ-6608-01 4 25256744 25256744 A T PI4K2B Nonsense_Mutation p.K161* 0.56 TCGA-AZ-6608-01 4 37636609 37636609 G A RELL1 Missense_Mutation p.R194W 0.31 deleterious(0) probably_damaging(0.969) TCGA-AZ-6608-01 4 39900431 39900431 A G PDS5A Silent p.C532C 0.19 TCGA-AZ-6608-01 4 57877244 57877244 A T POLR2B Missense_Mutation p.Q593L 0.31 tolerated(0.14) benign(0.297) TCGA-AZ-6608-01 5 112116511 112116511 A T APC Nonsense_Mutation p.R186* 0.55 TCGA-AZ-6608-01 5 112175282 112175282 A T APC Nonsense_Mutation p.R1331* 0.33 TCGA-AZ-6608-01 5 122135400 122135400 A T SNX2 Missense_Mutation p.E80D 0.55 tolerated(0.13) possibly_damaging(0.842) TCGA-AZ-6608-01 5 127522388 127522388 T C SLC12A2 3'UTR 0.08 TCGA-AZ-6608-01 5 140231718 140231718 A T PCDHA9 Intron 0.25 TCGA-AZ-6608-01 5 140480898 140480898 G A PCDHB3 Missense_Mutation p.R222Q 0.28 deleterious_low_confidence(0) benign(0.408) TCGA-AZ-6608-01 5 140794986 140794986 C T PCDHGA10 Silent p.D748D 0.58 TCGA-AZ-6608-01 5 147475467 147475467 T G SPINK5 Missense_Mutation p.V294G 0.26 tolerated(0.08) benign(0.001) TCGA-AZ-6608-01 5 160039919 160039919 G C ATP10B Missense_Mutation p.I889M 0.71 deleterious(0) probably_damaging(0.999) TCGA-AZ-6608-01 5 172745044 172745044 G T STC2 Missense_Mutation p.H239N 0.60 tolerated(0.48) benign(0.013) TCGA-AZ-6608-01 5 178564930 178564931 - C ADAMTS2 Frame_Shift_Ins p.R598Pfs*24 0.25 TCGA-AZ-6608-01 5 68903018 68903018 A G RP11-848G14.2 RNA 0.26 TCGA-AZ-6608-01 5 72858788 72858788 T C ANKRA2 5'UTR 0.30 TCGA-AZ-6608-01 5 80382734 80382734 A G RASGRF2 Missense_Mutation p.D451G 0.10 deleterious(0.01) probably_damaging(0.961) TCGA-AZ-6608-01 6 110423269 110423269 A C WASF1 Silent p.P348P 0.76 TCGA-AZ-6608-01 6 116756906 116756906 T A DSE Silent p.R425R 0.69 TCGA-AZ-6608-01 6 121769224 121769224 T G GJA1 3'UTR 0.60 TCGA-AZ-6608-01 6 138584503 138584503 C T KIAA1244 Missense_Mutation p.S628L 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AZ-6608-01 6 159403611 159403611 C T RSPH3 Missense_Mutation p.R343Q 0.70 tolerated(0.24) benign(0.079) TCGA-AZ-6608-01 6 64410245 64410245 A T PHF3 Missense_Mutation p.L996F 0.50 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 7 113518562 113518562 A T PPP1R3A Missense_Mutation p.L862Q 0.60 tolerated(0.54) benign(0.02) TCGA-AZ-6608-01 7 1192860 1192860 T A ZFAND2A Missense_Mutation p.I95F 0.27 deleterious(0) benign(0.369) TCGA-AZ-6608-01 7 128491319 128491319 A T FLNC Missense_Mutation p.N1858I 0.65 deleterious(0) probably_damaging(0.971) TCGA-AZ-6608-01 7 14724963 14724963 C T DGKB Missense_Mutation p.V246M 0.74 tolerated(0.36) probably_damaging(0.91) TCGA-AZ-6608-01 7 21750323 21750323 T A DNAH11 Splice_Site p.X2285_splice 0.40 TCGA-AZ-6608-01 7 22862419 22862419 G C TOMM7 5'UTR 0.26 TCGA-AZ-6608-01 7 2565136 2565136 T C LFNG Missense_Mutation p.Y224H 0.23 deleterious(0) probably_damaging(1) TCGA-AZ-6608-01 7 30491672 30491672 T A NOD1 Missense_Mutation p.H454L 0.21 tolerated(0.32) benign(0) TCGA-AZ-6608-01 7 31887712 31887712 T G PDE1C Splice_Site p.X344_splice 0.10 TCGA-AZ-6608-01 7 35712873 35712873 T G HERPUD2 Silent p.R55R 0.17 TCGA-AZ-6608-01 7 48315883 48315883 A T ABCA13 Missense_Mutation p.N2207I 0.12 possibly_damaging(0.548) TCGA-AZ-6608-01 7 71135019 71135019 T A WBSCR17 Nonsense_Mutation p.C443* 0.64 TCGA-AZ-6608-01 7 72727067 72727067 C T TRIM50 Silent p.P438P 0.38 TCGA-AZ-6608-01 7 92762986 92762986 A G SAMD9L Silent p.L767L 0.29 TCGA-AZ-6608-01 8 110456049 110456049 A G PKHD1L1 Missense_Mutation p.N1570S 0.71 tolerated(1) benign(0.005) TCGA-AZ-6608-01 8 114290888 114290888 A T CSMD3 Silent p.S149S 0.65 TCGA-AZ-6608-01 8 121216025 121216025 G A COL14A1 Missense_Mutation p.E319K 0.25 deleterious(0.01) possibly_damaging(0.86) TCGA-AZ-6608-01 8 126059471 126059471 T A KIAA0196 Missense_Mutation p.I828F 0.75 deleterious(0) probably_damaging(0.98) TCGA-AZ-6608-01 8 131792813 131792813 G A ADCY8 Silent p.A1193A 0.29 TCGA-AZ-6608-01 8 131795991 131795991 C A ADCY8 Nonsense_Mutation p.E1072* 0.19 TCGA-AZ-6608-01 8 145947899 145947899 A T ZNF251 Nonsense_Mutation p.C382* 0.12 TCGA-AZ-6608-01 8 1626537 1626537 A T DLGAP2 Missense_Mutation p.S736C 0.83 deleterious(0.01) possibly_damaging(0.838) TCGA-AZ-6608-01 8 3565936 3565936 A T CSMD1 Missense_Mutation p.L337M 0.67 possibly_damaging(0.655) TCGA-AZ-6608-01 8 65495364 65495364 T C BHLHE22 3'UTR 0.23 TCGA-AZ-6608-01 8 91094940 91094940 T C CALB1 5'UTR 0.72 TCGA-AZ-6608-01 8 94934584 94934584 A T PDP1 Silent p.P124P 0.16 TCGA-AZ-6608-01 8 99442963 99442963 T A KCNS2 3'UTR 0.84 TCGA-AZ-6608-01 9 100116873 100116873 T - CCDC180 Frame_Shift_Del p.S1054Lfs*19 0.32 TCGA-AZ-6608-01 9 102606989 102606989 A G NR4A3 Missense_Mutation p.Y449C 0.43 deleterious(0) probably_damaging(0.998) TCGA-AZ-6608-01 9 108536485 108536485 A T TMEM38B 3'UTR 0.70 TCGA-AZ-6608-01 9 119582970 119582970 A T ASTN2 Nonsense_Mutation p.C660* 0.54 TCGA-AZ-6608-01 9 138557114 138557114 G A LCN9 Missense_Mutation p.V111I 0.30 tolerated(1) benign(0.173) TCGA-AZ-6608-01 9 21239385 21239385 T A IFNA14 Nonsense_Mutation p.R184* 0.35 TCGA-AZ-6608-01 9 32786737 32786737 A G TMEM215 3'UTR 0.49 TCGA-AZ-6608-01 9 5969028 5969028 A G KIAA2026 Silent p.P401P 0.14 TCGA-AZ-6608-01 X 10155557 10155557 C T CLCN4 Silent p.I49I 0.44 TCGA-AZ-6608-01 X 102334193 102334193 T A NXF3 Splice_Site p.X446_splice 0.42 TCGA-AZ-6608-01 X 106016283 106016283 T G RNF128 Missense_Mutation p.F209V 0.20 deleterious(0) possibly_damaging(0.851) TCGA-AZ-6608-01 X 108718728 108718728 A C GUCY2F Missense_Mutation p.I146M 0.34 deleterious(0.05) possibly_damaging(0.642) TCGA-AZ-6608-01 X 129159222 129159222 G A BCORL1 Missense_Mutation p.E1316K 0.45 probably_damaging(0.993) TCGA-AZ-6608-01 X 20062620 20062620 T A MAP7D2 Missense_Mutation p.L247F 0.37 tolerated(0.1) possibly_damaging(0.901) TCGA-AZ-6608-01 X 34961136 34961136 A C FAM47B Missense_Mutation p.Q63P 0.50 tolerated(1) benign(0) TCGA-AZ-6608-01 X 36007539 36007539 C T CXorf22 Silent p.N939N 0.41 TCGA-AZ-6608-01 X 43603641 43603641 A T MAOA Missense_Mutation p.T489S 0.43 tolerated(0.45) benign(0.002) TCGA-AZ-6608-01 X 47306758 47306758 A T ZNF41 3'UTR 0.67 TCGA-AZ-6608-01 X 48925390 48925390 T A CCDC120 Silent p.A545A 0.50 TCGA-AZ-6608-01 X 54836400 54836400 T A MAGED2 Silent p.A97A 0.39 TCGA-AZ-6608-01 X 65259856 65259856 T A VSIG4 5'UTR 0.46 TCGA-AZ-6608-01 X 67937942 67937942 T A STARD8 Missense_Mutation p.W396R 0.40 tolerated(0.84) probably_damaging(0.942) TCGA-AZ-6608-01 X 69497254 69497254 C T ARR3 Missense_Mutation p.R162W 0.45 deleterious(0) benign(0.138) TCGA-AZ-6608-01 X 7243378 7243378 A C STS Splice_Site p.X366_splice 0.38 TCGA-AZ-6608-01 X 85302543 85302543 G C CHM 5'UTR 0.24 TCGA-CA-5254-01 10 102566244 102566244 G A PAX2 Missense_Mutation p.R248Q 0.33 deleterious(0.03) probably_damaging(0.98) TCGA-CA-5254-01 10 116050066 116050066 G T VWA2 3'Flank 0.21 TCGA-CA-5254-01 10 121196299 121196299 C T GRK5 Missense_Mutation p.A292V 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-CA-5254-01 10 124457358 124457358 T A C10orf120 Missense_Mutation p.D300V 0.25 deleterious(0) probably_damaging(0.967) TCGA-CA-5254-01 10 127477442 127477442 A G UROS Missense_Mutation p.C265R 0.61 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CA-5254-01 10 21074741 21074741 C T NEBL Missense_Mutation p.G994S 0.24 deleterious(0) probably_damaging(0.99) TCGA-CA-5254-01 10 21101810 21101810 G A NEBL Silent p.D802D 0.33 TCGA-CA-5254-01 10 73045164 73045164 C T UNC5B Missense_Mutation p.P177L 0.69 deleterious(0) possibly_damaging(0.733) TCGA-CA-5254-01 10 73563153 73563153 C T CDH23 Silent p.N376N 0.25 TCGA-CA-5254-01 10 75051743 75051743 A T TTC18 Missense_Mutation p.D670E 0.60 tolerated(1) benign(0.006) TCGA-CA-5254-01 10 75108210 75108210 G A TTC18 Missense_Mutation p.A107V 0.19 deleterious(0) probably_damaging(0.994) TCGA-CA-5254-01 10 75185575 75185575 G A MSS51 Missense_Mutation p.H355Y 0.18 deleterious(0.03) benign(0.077) TCGA-CA-5254-01 10 93579721 93579721 G C TNKS2 Missense_Mutation p.G220A 0.50 tolerated(0.06) probably_damaging(0.998) TCGA-CA-5254-01 11 100998742 100998742 C T PGR Missense_Mutation p.A354T 0.74 tolerated_low_confidence(0.12) benign(0.012) TCGA-CA-5254-01 11 10785695 10785695 G A CTR9 Missense_Mutation p.D411N 0.22 deleterious(0) probably_damaging(0.977) TCGA-CA-5254-01 11 113105855 113105855 C T NCAM1 Silent p.S647S 0.25 TCGA-CA-5254-01 11 123479435 123479435 G A GRAMD1B Missense_Mutation p.V385M 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CA-5254-01 11 1264398 1264398 G A MUC5B Silent p.P2096P 0.27 TCGA-CA-5254-01 11 20676318 20676318 C T SLC6A5 Silent p.R766R 0.37 TCGA-CA-5254-01 11 61111385 61111385 G A DAK Missense_Mutation p.R347Q 0.62 tolerated(0.51) benign(0.001) TCGA-CA-5254-01 11 61537864 61537864 C T MYRF Missense_Mutation p.R203W 0.24 deleterious(0) probably_damaging(0.987) TCGA-CA-5254-01 11 64135609 64135609 C T RPS6KA4 Silent p.Y359Y 0.24 TCGA-CA-5254-01 11 67172885 67172885 C T TBC1D10C Missense_Mutation p.R90W 0.52 deleterious(0) probably_damaging(0.999) TCGA-CA-5254-01 11 84865603 84865603 T C DLG2 Silent p.T93T 0.10 TCGA-CA-5254-01 11 89133398 89133398 T A NOX4 Missense_Mutation p.K332N 0.22 tolerated(0.06) benign(0.371) TCGA-CA-5254-01 11 92534642 92534642 C A FAT3 Silent p.T2821T 0.27 TCGA-CA-5254-01 11 94583279 94583279 A G AMOTL1 Missense_Mutation p.N550S 0.27 tolerated(0.34) benign(0.009) TCGA-CA-5254-01 12 100042057 100042057 C T FAM71C Silent p.G35G 0.16 TCGA-CA-5254-01 12 111890636 111890636 G A ATXN2 Missense_Mutation p.H1308Y 0.28 probably_damaging(0.979) TCGA-CA-5254-01 12 112670867 112670867 G T HECTD4 Silent p.R1834R 0.30 TCGA-CA-5254-01 12 32136453 32136453 A G KIAA1551 Missense_Mutation p.N855S 0.36 tolerated(0.87) benign(0.015) TCGA-CA-5254-01 12 40618975 40618975 A T LRRK2 Missense_Mutation p.E14D 0.17 tolerated_low_confidence(0.14) benign(0.005) TCGA-CA-5254-01 12 40692969 40692969 C A LRRK2 Missense_Mutation p.L1136I 0.44 tolerated(0.23) benign(0.437) TCGA-CA-5254-01 12 49317231 49317231 C T FKBP11 Intron 0.47 TCGA-CA-5254-01 12 56492633 56492633 A G ERBB3 Missense_Mutation p.E928G 0.38 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 12 6125796 6125796 G T VWF Missense_Mutation p.L1733M 0.27 tolerated(0.12) benign(0.169) TCGA-CA-5254-01 12 6805678 6805678 T C PIANP Missense_Mutation p.Q179R 0.18 deleterious(0.01) benign(0.145) TCGA-CA-5254-01 12 7898969 7898969 A G CLEC4C Missense_Mutation p.S28P 0.49 deleterious(0.03) possibly_damaging(0.643) TCGA-CA-5254-01 12 85439880 85439880 C A LRRIQ1 Missense_Mutation p.P140H 0.41 deleterious(0.03) possibly_damaging(0.503) TCGA-CA-5254-01 12 994793 994793 C T WNK1 Missense_Mutation p.A1608V 0.30 tolerated_low_confidence(0.23) benign(0.047) TCGA-CA-5254-01 13 113773011 113773011 C T F7 Missense_Mutation p.R364W 0.25 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 13 113826018 113826018 G T PROZ Nonsense_Mutation p.E290* 0.33 TCGA-CA-5254-01 13 29599396 29599396 C T MTUS2 Silent p.V197V 0.50 TCGA-CA-5254-01 13 36223812 36223812 G A NBEA Silent p.P2576P 0.46 TCGA-CA-5254-01 13 48517436 48517441 AACACA G SUCLA2 3'UTR 0.28 TCGA-CA-5254-01 13 48654029 48654029 G A MED4 Silent p.G197G 0.29 TCGA-CA-5254-01 13 52710273 52710273 A C NEK3 Missense_Mutation p.L368V 0.50 tolerated(0.52) benign(0.005) TCGA-CA-5254-01 13 67801282 67801282 C A PCDH9 Missense_Mutation p.G431C 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-CA-5254-01 13 96285563 96285563 C A DZIP1 Missense_Mutation p.D204Y 0.26 deleterious(0) benign(0.023) TCGA-CA-5254-01 13 99336894 99336894 C T SLC15A1 3'UTR 0.12 TCGA-CA-5254-01 14 101492117 101492117 C T MIR323A RNA 0.47 TCGA-CA-5254-01 14 23067167 23067167 G C ABHD4 5'UTR 0.44 TCGA-CA-5254-01 14 47120870 47120870 G A RPL10L Nonsense_Mutation p.R24* 0.14 TCGA-CA-5254-01 14 51443933 51443933 C T TRIM9 3'UTR 0.31 TCGA-CA-5254-01 14 76219246 76219246 G A TTLL5 Missense_Mutation p.E500K 0.42 deleterious(0) possibly_damaging(0.89) TCGA-CA-5254-01 14 94849160 94849160 C T SERPINA1 Missense_Mutation p.G139S 0.12 tolerated(0.1) probably_damaging(0.972) TCGA-CA-5254-01 14 94912798 94912798 C T SERPINA11 Missense_Mutation p.V263I 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CA-5254-01 15 24926331 24926331 C A NPAP1 3'UTR 0.25 TCGA-CA-5254-01 15 24928575 24928575 G A NPAP1 3'UTR 0.35 TCGA-CA-5254-01 15 29346112 29346112 G A APBA2 Missense_Mutation p.V9M 0.28 deleterious_low_confidence(0) benign(0.313) TCGA-CA-5254-01 15 54542602 54542602 C T UNC13C Silent p.H1136H 0.53 TCGA-CA-5254-01 15 60715896 60715896 A G NARG2 Silent p.S962S 0.23 TCGA-CA-5254-01 15 68628130 68628130 C T ITGA11 Missense_Mutation p.G444R 0.29 deleterious(0.04) possibly_damaging(0.555) TCGA-CA-5254-01 15 77908028 77908028 C T LINGO1 Missense_Mutation p.R74H 0.50 deleterious(0) possibly_damaging(0.851) TCGA-CA-5254-01 15 79089057 79089057 G A ADAMTS7 Missense_Mutation p.R232C 0.61 deleterious(0) probably_damaging(0.931) TCGA-CA-5254-01 16 3304678 3304678 G A MEFV Silent p.N130N 0.36 TCGA-CA-5254-01 16 50357527 50357528 - C BRD7 Frame_Shift_Ins p.H472Afs*14 0.31 TCGA-CA-5254-01 16 57719606 57719606 C T GPR97 Silent p.H436H 0.41 TCGA-CA-5254-01 16 67645513 67645513 A T CTCF Nonsense_Mutation p.K260* 0.25 TCGA-CA-5254-01 16 68014033 68014033 G A DPEP3 Missense_Mutation p.A109V 0.41 tolerated(0.15) benign(0.259) TCGA-CA-5254-01 16 71967335 71967335 A C RP11-498D10.6 3'Flank 0.41 TCGA-CA-5254-01 16 75646738 75646738 G A ADAT1 Missense_Mutation p.P149L 0.24 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 16 78420789 78420789 C T WWOX Silent p.D183D 0.09 TCGA-CA-5254-01 16 88925126 88925126 G A TRAPPC2L Missense_Mutation p.A45T 0.41 tolerated(0.59) benign(0.013) TCGA-CA-5254-01 17 11840812 11840812 C T DNAH9 Silent p.D4211D 0.40 TCGA-CA-5254-01 17 32583889 32583889 C A CCL2 3'UTR 0.43 TCGA-CA-5254-01 17 37368647 37368647 G C STAC2 Missense_Mutation p.I378M 0.63 deleterious(0) possibly_damaging(0.739) TCGA-CA-5254-01 17 39778716 39778716 T C KRT17 Missense_Mutation p.N188S 0.21 deleterious(0.02) possibly_damaging(0.836) TCGA-CA-5254-01 17 59557268 59557268 C A TBX4 Missense_Mutation p.N243K 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-5254-01 17 62020234 62020234 C T SCN4A Missense_Mutation p.V1414I 0.15 tolerated(0.57) benign(0.012) TCGA-CA-5254-01 17 63848091 63848091 G C CEP112 Nonsense_Mutation p.S742* 0.14 TCGA-CA-5254-01 17 6526243 6526243 A G KIAA0753 Missense_Mutation p.S355P 0.10 deleterious(0.03) probably_damaging(0.994) TCGA-CA-5254-01 17 65943891 65943891 G A BPTF Missense_Mutation p.S2556N 0.10 benign(0.116) TCGA-CA-5254-01 18 14542921 14542921 G A POTEC Silent p.S75S 0.10 TCGA-CA-5254-01 18 43207061 43207061 G T SLC14A2 Missense_Mutation p.G157V 0.10 tolerated(0.13) benign(0.002) TCGA-CA-5254-01 18 66564527 66564527 A G CCDC102B Silent p.G375G 0.19 TCGA-CA-5254-01 18 76752099 76752099 C T SALL3 Silent p.D36D 0.67 TCGA-CA-5254-01 19 11597656 11597656 G A ZNF653 Silent p.D461D 0.18 TCGA-CA-5254-01 19 14038936 14038936 G A CC2D1A Splice_Site p.X819_splice 0.31 TCGA-CA-5254-01 19 17119315 17119315 C T CPAMD8 Missense_Mutation p.G234S 0.23 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 19 38378796 38378796 G A WDR87 Missense_Mutation p.R1800W 0.52 benign(0.002) TCGA-CA-5254-01 19 44570589 44570589 T G ZNF223 Missense_Mutation p.L203R 0.24 tolerated(0.41) benign(0.013) TCGA-CA-5254-01 19 46915025 46915025 G T CCDC8 Missense_Mutation p.P348Q 0.33 benign(0.138) TCGA-CA-5254-01 19 46997183 46997183 C A PNMAL2 Nonsense_Mutation p.E514* 0.53 TCGA-CA-5254-01 19 49552137 49552137 G A CGB8 5'UTR 0.40 TCGA-CA-5254-01 19 49645310 49645310 G T PPFIA3 Missense_Mutation p.A828S 0.75 deleterious(0.02) benign(0.175) TCGA-CA-5254-01 19 51842162 51842162 C T VSIG10L Missense_Mutation p.R570H 0.23 deleterious(0.01) probably_damaging(0.955) TCGA-CA-5254-01 19 5231497 5231497 G A PTPRS Missense_Mutation p.P660L 0.25 tolerated(0.19) possibly_damaging(0.623) TCGA-CA-5254-01 19 52918557 52918557 T A ZNF528 Missense_Mutation p.I151N 0.45 deleterious(0.04) benign(0.426) TCGA-CA-5254-01 19 54395035 54395035 C T PRKCG Nonsense_Mutation p.R213* 0.18 TCGA-CA-5254-01 19 56228215 56228215 C T NLRP9 Missense_Mutation p.V737I 0.54 tolerated(0.08) possibly_damaging(0.644) TCGA-CA-5254-01 19 56369635 56369635 G A NLRP4 Silent p.T292T 0.28 TCGA-CA-5254-01 19 6307229 6307229 C T ACER1 Nonsense_Mutation p.W187* 0.42 TCGA-CA-5254-01 19 7692211 7692211 C T XAB2 Missense_Mutation p.R147Q 0.23 deleterious(0) possibly_damaging(0.888) TCGA-CA-5254-01 1 107600300 107600300 G A PRMT6 Silent p.A321A 0.56 TCGA-CA-5254-01 1 110591790 110591790 T C STRIP1 Missense_Mutation p.V573A 0.11 deleterious(0) benign(0.039) TCGA-CA-5254-01 1 114196483 114196483 C T MAGI3 Silent p.A824A 0.29 TCGA-CA-5254-01 1 117297547 117297547 A - CD2 Frame_Shift_Del p.I121Yfs*4 0.38 TCGA-CA-5254-01 1 143767619 143767619 G A PPIAL4G Missense_Mutation p.S77F 0.26 deleterious_low_confidence(0.03) probably_damaging(0.949) TCGA-CA-5254-01 1 145096550 145096550 G C SEC22B RNA 0.33 TCGA-CA-5254-01 1 150471505 150471505 G A TARS2 Missense_Mutation p.E512K 0.15 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 1 152192846 152192846 G T HRNR Missense_Mutation p.S420Y 0.56 unknown(0) TCGA-CA-5254-01 1 152733599 152733599 A C KPRP Missense_Mutation p.D512A 0.74 deleterious_low_confidence(0.01) benign(0.06) TCGA-CA-5254-01 1 158946502 158946502 C A PYHIN1 3'UTR 0.54 TCGA-CA-5254-01 1 183498597 183498597 G A SMG7 Missense_Mutation p.G258S 0.55 tolerated(0.1) benign(0.223) TCGA-CA-5254-01 1 186313563 186313563 C T TPR Missense_Mutation p.E1121K 0.29 possibly_damaging(0.621) TCGA-CA-5254-01 1 202097343 202097343 G A GPR37L1 Missense_Mutation p.A369T 0.19 deleterious(0.01) benign(0.06) TCGA-CA-5254-01 1 202300875 202300875 C T UBE2T 3'UTR 0.23 TCGA-CA-5254-01 1 204953228 204953228 C T NFASC Intron 0.47 TCGA-CA-5254-01 1 207651401 207651401 C T CR2 Missense_Mutation p.A1025V 0.26 deleterious(0.02) probably_damaging(0.984) TCGA-CA-5254-01 1 211748689 211748689 C G SLC30A1 3'UTR 0.18 TCGA-CA-5254-01 1 227239651 227239651 C T CDC42BPA Intron 0.36 TCGA-CA-5254-01 1 228550345 228550345 C T OBSCN Missense_Mutation p.P7201S 0.30 benign(0.004) TCGA-CA-5254-01 1 27101438 27101438 C - ARID1A Frame_Shift_Del p.P1575Hfs*37 0.47 TCGA-CA-5254-01 1 62675957 62675957 G A L1TD1 Missense_Mutation p.R504H 0.28 tolerated(0.61) benign(0) TCGA-CA-5254-01 1 66102482 66102482 G T LEPR Missense_Mutation p.L1094F 0.25 deleterious(0.01) possibly_damaging(0.796) TCGA-CA-5254-01 1 70504773 70504773 C A LRRC7 Missense_Mutation p.P1051H 0.43 deleterious(0) possibly_damaging(0.653) TCGA-CA-5254-01 1 89659006 89659006 G T GBP4 Missense_Mutation p.H151Q 0.29 tolerated(0.96) benign(0.219) TCGA-CA-5254-01 20 17475039 17475039 G A BFSP1 Missense_Mutation p.R560C 0.41 tolerated(0.05) possibly_damaging(0.54) TCGA-CA-5254-01 20 30475041 30475041 C T TTLL9 Nonsense_Mutation p.R38* 0.21 TCGA-CA-5254-01 20 33867745 33867745 C T EIF6 Silent p.V182V 0.46 TCGA-CA-5254-01 20 40710553 40710553 C T PTPRT Missense_Mutation p.R1414H 0.45 deleterious(0) probably_damaging(0.998) TCGA-CA-5254-01 20 44806642 44806642 C T CDH22 Missense_Mutation p.A620T 0.41 tolerated(0.17) benign(0.003) TCGA-CA-5254-01 20 46262273 46262274 - A NCOA3 Frame_Shift_Ins p.S287Ifs*8 0.19 TCGA-CA-5254-01 20 51870661 51870661 G A TSHZ2 Missense_Mutation p.A222T 0.55 deleterious(0) probably_damaging(0.999) TCGA-CA-5254-01 20 61512784 61512784 C T DIDO1 Silent p.G1508G 0.17 TCGA-CA-5254-01 20 61528134 61528134 G A DIDO1 Silent p.S601S 0.17 TCGA-CA-5254-01 20 6750897 6750897 T G BMP2 Missense_Mutation p.S42A 0.42 tolerated(0.24) benign(0.024) TCGA-CA-5254-01 20 941065 941065 G A RSPO4 Missense_Mutation p.R214C 0.38 deleterious(0) probably_damaging(0.942) TCGA-CA-5254-01 22 18028500 18028500 C T CECR2 Missense_Mutation p.R1154W 0.23 deleterious(0) possibly_damaging(0.885) TCGA-CA-5254-01 22 39387583 39387583 C A APOBEC3B Missense_Mutation p.Q324K 0.19 tolerated(0.53) benign(0.075) TCGA-CA-5254-01 22 44276749 44276749 C T PNPLA5 Missense_Mutation p.V406I 0.17 tolerated(0.3) benign(0.025) TCGA-CA-5254-01 22 45580396 45580396 A G NUP50 Missense_Mutation p.N423D 0.27 deleterious(0.01) probably_damaging(0.921) TCGA-CA-5254-01 2 119600511 119600511 C T EN1 3'UTR 0.47 TCGA-CA-5254-01 2 119600733 119600733 C T EN1 Silent p.A320A 0.28 TCGA-CA-5254-01 2 1312325 1312325 G A SNTG2 Silent p.A448A 0.20 TCGA-CA-5254-01 2 132263911 132263911 A G AC093838.4 RNA 0.27 TCGA-CA-5254-01 2 170048527 170048527 C T LRP2 Silent p.S2949S 0.21 TCGA-CA-5254-01 2 176958342 176958342 G A HOXD13 Missense_Mutation p.V242M 0.38 tolerated(0.59) benign(0.073) TCGA-CA-5254-01 2 179404265 179404265 A G TTN Missense_Mutation p.W32843R 0.23 TCGA-CA-5254-01 2 187703740 187703740 C T ZSWIM2 Missense_Mutation p.C147Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-5254-01 2 190606164 190606164 C T ANKAR Missense_Mutation p.S1266L 0.23 deleterious(0) possibly_damaging(0.631) TCGA-CA-5254-01 2 198571316 198571316 A G MARS2 Missense_Mutation p.N396S 0.10 deleterious(0) possibly_damaging(0.514) TCGA-CA-5254-01 2 20096881 20096881 A C TTC32 Missense_Mutation p.F108C 0.24 deleterious(0) probably_damaging(0.997) TCGA-CA-5254-01 2 211459246 211459246 C A CPS1 Silent p.S399S 0.24 TCGA-CA-5254-01 2 220439970 220439970 G T INHA Missense_Mutation p.G275C 0.23 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 2 231103532 231103532 A G SP140 Intron 0.13 TCGA-CA-5254-01 2 238647928 238647928 C T LRRFIP1 Intron 0.30 TCGA-CA-5254-01 2 241514940 241514940 T C RNPEPL1 Missense_Mutation p.F244L 0.28 deleterious(0) benign(0.176) TCGA-CA-5254-01 2 29222252 29222252 C G FAM179A Missense_Mutation p.N115K 0.54 tolerated(0.11) benign(0.206) TCGA-CA-5254-01 2 47278940 47278940 G T TTC7A Missense_Mutation p.E691D 0.48 tolerated(0.07) possibly_damaging(0.831) TCGA-CA-5254-01 2 61244899 61244899 C G PEX13 Missense_Mutation p.A2G 0.25 tolerated_low_confidence(0.11) probably_damaging(0.976) TCGA-CA-5254-01 2 85273234 85273234 C T KCMF1 Missense_Mutation p.S145L 0.25 deleterious(0.04) possibly_damaging(0.72) TCGA-CA-5254-01 2 90078020 90078020 C T IGKV3D-20 Silent p.T19T 0.28 TCGA-CA-5254-01 3 124114158 124114158 G A KALRN Silent p.A711A 0.33 TCGA-CA-5254-01 3 126752912 126752912 G T PLXNA1 3'UTR 0.18 TCGA-CA-5254-01 3 128060143 128060143 G T EEFSEC Missense_Mutation p.R285L 0.33 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 3 12849768 12849768 G C CAND2 Missense_Mutation p.A143P 0.72 tolerated(0.15) benign(0.177) TCGA-CA-5254-01 3 132319804 132319804 T C ACKR4 Missense_Mutation p.F188S 0.19 deleterious(0) possibly_damaging(0.88) TCGA-CA-5254-01 3 134967277 134967277 G A EPHB1 Silent p.A872A 0.26 TCGA-CA-5254-01 3 135871035 135871035 C T MSL2 Missense_Mutation p.D230N 0.21 tolerated(0.49) benign(0.005) TCGA-CA-5254-01 3 147128842 147128842 C T ZIC1 Missense_Mutation p.R315C 0.29 deleterious(0) probably_damaging(0.987) TCGA-CA-5254-01 3 15345726 15345726 T G SH3BP5 Missense_Mutation p.K72Q 0.25 tolerated(0.1) possibly_damaging(0.77) TCGA-CA-5254-01 3 155271971 155271971 C T PLCH1 Missense_Mutation p.G350S 0.48 deleterious(0) probably_damaging(0.989) TCGA-CA-5254-01 3 179754395 179754395 C T PEX5L 5'UTR 0.17 TCGA-CA-5254-01 3 185209432 185209432 T C TMEM41A Missense_Mutation p.M230V 0.35 tolerated(0.56) benign(0) TCGA-CA-5254-01 3 186969494 186969494 C A MASP1 Missense_Mutation p.E313D 0.37 tolerated(0.18) benign(0.006) TCGA-CA-5254-01 3 20167543 20167543 C A KAT2B Missense_Mutation p.N520K 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-CA-5254-01 3 36869735 36869735 G A TRANK1 3'UTR 0.28 TCGA-CA-5254-01 3 38357968 38357968 G T SLC22A14 Silent p.T562T 0.26 TCGA-CA-5254-01 3 53133425 53133425 C A RFT1 Missense_Mutation p.A394S 0.30 deleterious(0.04) probably_damaging(0.923) TCGA-CA-5254-01 3 77147227 77147227 G A ROBO2 Missense_Mutation p.V58I 0.33 deleterious(0) unknown(0) TCGA-CA-5254-01 3 77693976 77693976 C A ROBO2 Silent p.G1368G 0.59 TCGA-CA-5254-01 3 95374215 95374215 G A MTHFD2P1 RNA 0.18 TCGA-CA-5254-01 4 101108982 101108982 C A DDIT4L Missense_Mutation p.C145F 0.48 tolerated(0.05) benign(0.18) TCGA-CA-5254-01 4 103518742 103518742 G A NFKB1 Missense_Mutation p.A521T 0.25 deleterious(0) probably_damaging(0.957) TCGA-CA-5254-01 4 106345417 106345417 T C PPA2 Silent p.E197E 0.20 TCGA-CA-5254-01 4 118006205 118006205 T C TRAM1L1 Silent p.K115K 0.10 TCGA-CA-5254-01 4 123097031 123097031 G A KIAA1109 Missense_Mutation p.R107Q 0.21 probably_damaging(0.929) TCGA-CA-5254-01 4 138442202 138442202 T G PCDH18 Missense_Mutation p.Q1130P 0.52 deleterious(0) probably_damaging(0.997) TCGA-CA-5254-01 4 147795890 147795890 T G TTC29 Missense_Mutation p.K259N 0.36 deleterious(0) probably_damaging(0.993) TCGA-CA-5254-01 4 154555410 154555410 C T KIAA0922 Silent p.N1465N 0.17 TCGA-CA-5254-01 4 156860659 156860659 C G CTSO Missense_Mutation p.G139A 0.08 tolerated(0.16) benign(0.192) TCGA-CA-5254-01 4 166960502 166960502 T - TLL1 Frame_Shift_Del p.F391Lfs*19 0.32 TCGA-CA-5254-01 4 167833867 167833867 C A SPOCK3 Missense_Mutation p.R129S 0.47 tolerated(0.17) benign(0.028) TCGA-CA-5254-01 4 184930896 184930896 C T STOX2 Missense_Mutation p.T302M 0.41 tolerated(0.05) benign(0.011) TCGA-CA-5254-01 4 36122934 36122934 G T ARAP2 Nonsense_Mutation p.S1254* 0.26 TCGA-CA-5254-01 4 56858234 56858234 A T CEP135 Silent p.T664T 0.22 TCGA-CA-5254-01 4 57250327 57250327 T A AASDH Missense_Mutation p.N47Y 0.30 tolerated(0.08) benign(0.002) TCGA-CA-5254-01 4 9784287 9784287 G A DRD5 Missense_Mutation p.V212M 0.23 tolerated(0.13) benign(0.39) TCGA-CA-5254-01 5 1243696 1243696 C T SLC6A18 Silent p.F386F 0.47 TCGA-CA-5254-01 5 128301696 128301696 C T SLC27A6 5'UTR 0.20 TCGA-CA-5254-01 5 134782031 134782031 T A TIFAB 3'UTR 0.65 TCGA-CA-5254-01 5 139937104 139937106 GAG - SRA1 5'UTR 0.48 TCGA-CA-5254-01 5 140202802 140202802 C T PCDHA5 Missense_Mutation p.A481V 0.34 deleterious_low_confidence(0.04) benign(0.414) TCGA-CA-5254-01 5 140250497 140250497 C T PCDHA11 Silent p.N603N 0.52 TCGA-CA-5254-01 5 140257357 140257357 C T PCDHA12 Missense_Mutation p.T767M 0.27 deleterious_low_confidence(0.02) benign(0.18) TCGA-CA-5254-01 5 140503140 140503140 C T PCDHB4 Silent p.Y520Y 0.57 TCGA-CA-5254-01 5 140565045 140565045 G A PCDHB16 3'UTR 0.29 TCGA-CA-5254-01 5 140812163 140812163 G A PCDHGA12 Missense_Mutation p.E613K 0.23 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-CA-5254-01 5 145631428 145631428 T A RBM27 Silent p.P478P 0.50 TCGA-CA-5254-01 5 148747761 148747761 G A PCYOX1L Silent p.S343S 0.52 TCGA-CA-5254-01 5 161322741 161322741 A T GABRA1 Missense_Mutation p.Y309F 0.53 deleterious(0) probably_damaging(0.983) TCGA-CA-5254-01 5 162910253 162910253 C A HMMR Intron 0.56 TCGA-CA-5254-01 5 169309748 169309748 C T FAM196B Silent p.R385R 0.58 TCGA-CA-5254-01 5 180166571 180166571 G C OR2Y1 Missense_Mutation p.A163G 0.34 deleterious(0) benign(0.006) TCGA-CA-5254-01 5 31323124 31323124 C T CDH6 Silent p.P694P 0.12 TCGA-CA-5254-01 5 35013132 35013132 G A AGXT2 Missense_Mutation p.A372V 0.18 deleterious(0.04) benign(0.149) TCGA-CA-5254-01 5 35065315 35065315 G A PRLR Missense_Mutation p.S582L 0.38 tolerated(0.08) benign(0.05) TCGA-CA-5254-01 5 43656028 43656028 C T NNT Missense_Mutation p.L716F 0.36 tolerated(0.11) benign(0.053) TCGA-CA-5254-01 5 54420694 54420694 G A CDC20B Silent p.H384H 0.23 TCGA-CA-5254-01 5 56174817 56174817 G C MAP3K1 Missense_Mutation p.R659T 0.20 deleterious(0) probably_damaging(0.991) TCGA-CA-5254-01 5 56174855 56174855 G A MAP3K1 Missense_Mutation p.E672K 0.35 deleterious(0) possibly_damaging(0.713) TCGA-CA-5254-01 5 7867791 7867791 G C FASTKD3 Missense_Mutation p.R136G 0.12 deleterious(0) probably_damaging(0.989) TCGA-CA-5254-01 5 95746650 95746650 C T PCSK1 Missense_Mutation p.G308E 0.41 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 6 109689550 109689550 T C CD164 3'UTR 0.09 TCGA-CA-5254-01 6 129781393 129781393 A G LAMA2 Missense_Mutation p.T2306A 0.10 tolerated(1) benign(0.319) TCGA-CA-5254-01 6 13287429 13287429 T A TBC1D7 Intron 0.94 TCGA-CA-5254-01 6 155597645 155597645 G C CLDN20 3'UTR 0.71 TCGA-CA-5254-01 6 161470319 161470319 A T MAP3K4 Missense_Mutation p.T339S 0.47 tolerated(1) benign(0.003) TCGA-CA-5254-01 6 24843701 24843701 G T FAM65B Missense_Mutation p.P437T 0.40 tolerated(0.07) benign(0.419) TCGA-CA-5254-01 6 27368612 27368612 C T ZNF391 Missense_Mutation p.H155Y 0.42 deleterious(0) probably_damaging(0.964) TCGA-CA-5254-01 6 29364726 29364726 C T OR12D2 Missense_Mutation p.L84F 0.32 tolerated(0.07) benign(0.014) TCGA-CA-5254-01 6 51824720 51824720 T A PKHD1 Missense_Mutation p.Q1952H 0.34 tolerated(0.16) benign(0.03) TCGA-CA-5254-01 6 84235334 84235334 G C PRSS35 3'UTR 0.35 TCGA-CA-5254-01 7 106545935 106545935 G T PIK3CG 3'UTR 0.78 TCGA-CA-5254-01 7 120704344 120704344 G A CPED1 Missense_Mutation p.C198Y 0.21 deleterious(0) probably_damaging(0.956) TCGA-CA-5254-01 7 146805320 146805320 T C CNTNAP2 Missense_Mutation p.V211A 0.31 deleterious(0.02) benign(0.334) TCGA-CA-5254-01 7 150698497 150698497 C T NOS3 Missense_Mutation p.P471L 0.30 deleterious(0) possibly_damaging(0.832) TCGA-CA-5254-01 7 150725664 150725664 C T ABCB8 Missense_Mutation p.P21L 0.40 tolerated_low_confidence(0.97) benign(0) TCGA-CA-5254-01 7 18706096 18706096 A T HDAC9 Missense_Mutation p.Q576H 0.35 deleterious(0.02) benign(0.108) TCGA-CA-5254-01 7 48259087 48259087 C T ABCA13 Nonsense_Mutation p.R142* 0.25 TCGA-CA-5254-01 7 55268950 55268950 G A EGFR Missense_Mutation p.D1006N 0.13 tolerated(0.12) benign(0.284) TCGA-CA-5254-01 7 5781407 5781407 G C RNF216 Missense_Mutation p.P81A 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-CA-5254-01 7 73602113 73602113 A G EIF4H Missense_Mutation p.T78A 0.17 deleterious(0) benign(0.324) TCGA-CA-5254-01 7 98257788 98257788 C T NPTX2 Silent p.R381R 0.25 TCGA-CA-5254-01 8 10470010 10470010 G A RP1L1 Missense_Mutation p.S533L 0.24 benign(0.211) TCGA-CA-5254-01 8 113293435 113293435 C A CSMD3 Missense_Mutation p.G3159V 0.42 deleterious(0) probably_damaging(0.949) TCGA-CA-5254-01 8 116616527 116616527 C A TRPS1 Missense_Mutation p.G557W 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-CA-5254-01 8 13425723 13425723 C A C8orf48 3'UTR 0.29 TCGA-CA-5254-01 8 144995672 144995672 C T PLEC Missense_Mutation p.A2910T 0.17 probably_damaging(0.999) TCGA-CA-5254-01 8 17094764 17094764 C A CNOT7 Nonsense_Mutation p.G144* 0.38 TCGA-CA-5254-01 8 22864764 22864764 C T RHOBTB2 Nonsense_Mutation p.R358* 0.33 TCGA-CA-5254-01 8 24349444 24349444 C T ADAM7 Missense_Mutation p.P462L 0.23 deleterious(0.04) benign(0.391) TCGA-CA-5254-01 8 28998160 28998160 C T KIF13B Intron 0.10 TCGA-CA-5254-01 8 3057289 3057289 C T CSMD1 Missense_Mutation p.R1714Q 0.38 probably_damaging(0.981) TCGA-CA-5254-01 8 36641910 36641910 G A KCNU1 5'UTR 0.17 TCGA-CA-5254-01 8 72756315 72756315 G A MSC Silent p.G33G 0.47 TCGA-CA-5254-01 8 77617104 77617104 G A ZFHX4 Missense_Mutation p.D261N 0.20 possibly_damaging(0.728) TCGA-CA-5254-01 8 77763782 77763782 A C ZFHX4 Missense_Mutation p.K1542T 0.11 possibly_damaging(0.607) TCGA-CA-5254-01 9 113191604 113191604 C T SVEP1 Missense_Mutation p.G1876R 0.29 probably_damaging(1) TCGA-CA-5254-01 9 117822178 117822178 A G TNC Silent p.I1379I 0.12 TCGA-CA-5254-01 9 125330399 125330399 C T OR1L8 Missense_Mutation p.A120T 0.14 deleterious(0) probably_damaging(1) TCGA-CA-5254-01 9 138714711 138714711 A G CAMSAP1 Missense_Mutation p.V599A 0.10 deleterious(0.05) benign(0.128) TCGA-CA-5254-01 9 139909519 139909519 C T ABCA2 Missense_Mutation p.R1243Q 0.32 tolerated(0.58) benign(0.052) TCGA-CA-5254-01 9 16870702 16870702 C G BNC2 5'UTR 0.28 TCGA-CA-5254-01 9 84607075 84607075 C T SPATA31D1 Missense_Mutation p.P564S 0.25 tolerated(0.08) benign(0.388) TCGA-CA-5254-01 9 84609928 84609928 C A SPATA31D1 Missense_Mutation p.P1515T 0.38 tolerated(0.12) probably_damaging(0.964) TCGA-CA-5254-01 9 98209698 98209698 C T PTCH1 Silent p.S1280S 0.33 TCGA-CA-5254-01 X 100808465 100808466 - TGGCC ARMCX1 Frame_Shift_Ins p.V187Gfs*18 0.24 TCGA-CA-5254-01 X 11682880 11682880 C T ARHGAP6 Silent p.S23S 0.90 TCGA-CA-5254-01 X 128691317 128691317 G A OCRL Missense_Mutation p.R85Q 0.84 tolerated(0.06) possibly_damaging(0.474) TCGA-CA-5254-01 X 37651291 37651291 T C CYBB Missense_Mutation p.W106R 0.09 deleterious(0) possibly_damaging(0.722) TCGA-CA-5254-01 X 55250542 55250542 C G PAGE5 3'Flank 0.44 TCGA-CA-5254-01 X 91873679 91873679 C T PCDH11X Missense_Mutation p.P1262S 0.70 tolerated_low_confidence(0.2) benign(0.118) TCGA-CA-5255-01 10 102677048 102677048 G T FAM178A Silent p.L302L 0.41 TCGA-CA-5255-01 10 11207629 11207629 C T CELF2 Silent p.N85N 0.17 TCGA-CA-5255-01 10 3193508 3193508 G A PITRM1 Silent p.L557L 0.19 TCGA-CA-5255-01 10 5683916 5683916 C T ASB13 Missense_Mutation p.V176M 0.23 deleterious(0) probably_damaging(0.99) TCGA-CA-5255-01 10 68687209 68687209 G T LRRTM3 Missense_Mutation p.D179Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-5255-01 11 18472565 18472565 G A LDHC Missense_Mutation p.R297Q 0.18 tolerated(0.84) benign(0.008) TCGA-CA-5255-01 11 44069877 44069877 T A ACCSL Silent p.P97P 0.16 TCGA-CA-5255-01 11 47440487 47440487 C T PSMC3 Missense_Mutation p.A407T 0.32 deleterious(0.02) benign(0.22) TCGA-CA-5255-01 11 62285652 62285652 T C AHNAK Missense_Mutation p.I5413V 0.12 benign(0.129) TCGA-CA-5255-01 12 109838973 109838973 C T MYO1H Missense_Mutation p.R200W 0.18 deleterious(0) probably_damaging(1) TCGA-CA-5255-01 12 11992182 11992182 G A ETV6 Missense_Mutation p.G91D 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-5255-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.55 deleterious(0) possibly_damaging(0.479) TCGA-CA-5255-01 12 40728801 40728801 C A LRRK2 Silent p.P1930P 0.28 TCGA-CA-5255-01 12 55759559 55759559 C A OR6C75 Missense_Mutation p.T222K 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-5255-01 13 109379844 109379844 C T MYO16 Silent p.N118N 0.22 TCGA-CA-5255-01 15 101718473 101718473 G A CHSY1 Missense_Mutation p.S510F 0.18 tolerated(0.1) probably_damaging(0.924) TCGA-CA-5255-01 15 43819392 43819392 G T MAP1A Missense_Mutation p.K1907N 0.14 probably_damaging(0.999) TCGA-CA-5255-01 15 51748315 51748315 T C DMXL2 Missense_Mutation p.Q2804R 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-CA-5255-01 15 65342324 65342324 C T SLC51B 5'UTR 0.19 TCGA-CA-5255-01 15 67529004 67529005 AG - AAGAB Frame_Shift_Del p.S76Cfs*9 0.08 TCGA-CA-5255-01 15 78455850 78455850 C T IDH3A Missense_Mutation p.R205W 0.09 deleterious(0) probably_damaging(1) TCGA-CA-5255-01 15 83331572 83331572 C T AP3B2 Missense_Mutation p.G884R 0.19 tolerated(0.35) probably_damaging(0.956) TCGA-CA-5255-01 16 28515307 28515307 G T IL27 Silent p.P32P 0.15 TCGA-CA-5255-01 16 31501867 31501867 G A SLC5A2 3'UTR 0.19 TCGA-CA-5255-01 16 51173208 51173208 A C SALL1 Missense_Mutation p.S975R 0.23 tolerated(0.28) benign(0.123) TCGA-CA-5255-01 16 86612682 86612682 G T FOXL1 Missense_Mutation p.G118V 0.08 deleterious(0) probably_damaging(0.93) TCGA-CA-5255-01 17 1386193 1386193 C T MYO1C Missense_Mutation p.V170M 0.19 deleterious(0) possibly_damaging(0.896) TCGA-CA-5255-01 17 63553974 63553975 - A AXIN2 Frame_Shift_Ins p.R256Efs*13 0.46 TCGA-CA-5255-01 17 74468902 74468902 A G RHBDF2 Missense_Mutation p.S673P 0.18 deleterious(0) probably_damaging(0.959) TCGA-CA-5255-01 17 8452037 8452037 G T MYH10 Missense_Mutation p.Q330K 0.14 probably_damaging(0.985) TCGA-CA-5255-01 17 8452039 8452039 C T MYH10 Missense_Mutation p.G329E 0.14 probably_damaging(1) TCGA-CA-5255-01 19 33871140 33871140 T - CEBPG 3'UTR 0.20 TCGA-CA-5255-01 19 36214095 36214095 G A KMT2B Missense_Mutation p.R974H 0.35 probably_damaging(0.991) TCGA-CA-5255-01 19 42738561 42738561 C T GSK3A Missense_Mutation p.R283H 0.40 deleterious(0) probably_damaging(0.998) TCGA-CA-5255-01 19 52034950 52034950 C T SIGLEC6 5'UTR 0.20 TCGA-CA-5255-01 19 55652268 55652268 G A TNNT1 Missense_Mutation p.R124C 0.15 deleterious(0.02) probably_damaging(1) TCGA-CA-5255-01 19 57868851 57868851 A G ZNF304 Silent p.K538K 0.27 TCGA-CA-5255-01 1 120342359 120342359 C G REG4 Missense_Mutation p.D98H 0.20 deleterious(0) probably_damaging(1) TCGA-CA-5255-01 1 161953905 161953905 C A OLFML2B Missense_Mutation p.A605S 0.09 deleterious(0.04) probably_damaging(0.977) TCGA-CA-5255-01 1 228520598 228520598 G A OBSCN Silent p.T6187T 0.35 TCGA-CA-5255-01 1 231076283 231076283 C G TTC13 Missense_Mutation p.R231P 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-5255-01 1 238090901 238090901 G A RP11-193H5.1 RNA 0.36 TCGA-CA-5255-01 1 248039221 248039221 C T TRIM58 Silent p.P297P 0.28 TCGA-CA-5255-01 1 55272686 55272686 T C C1orf177 Missense_Mutation p.V41A 0.08 tolerated(0.11) benign(0.159) TCGA-CA-5255-01 1 64014906 64014906 A G DLEU2L 5'UTR 0.21 TCGA-CA-5255-01 20 29891253 29891253 C A DEFB116 Missense_Mutation p.G24V 0.26 deleterious(0.01) possibly_damaging(0.823) TCGA-CA-5255-01 20 48431608 48431608 G A SLC9A8 Silent p.T30T 0.20 TCGA-CA-5255-01 21 37510191 37510191 A G CBR3 Missense_Mutation p.N120D 0.10 tolerated(1) benign(0.002) TCGA-CA-5255-01 22 17680478 17680478 G A CECR1 Intron 0.30 TCGA-CA-5255-01 22 26888248 26888248 G A TFIP11 Nonsense_Mutation p.Q749* 0.20 TCGA-CA-5255-01 22 26888249 26888249 C T TFIP11 Missense_Mutation p.M748I 0.20 tolerated(0.31) benign(0.035) TCGA-CA-5255-01 22 37398023 37398023 G C TEX33 Missense_Mutation p.P115R 0.17 tolerated(0.06) possibly_damaging(0.904) TCGA-CA-5255-01 22 38120130 38120130 C T TRIOBP Nonsense_Mutation p.R523* 0.10 TCGA-CA-5255-01 22 42388741 42388741 G A SEPT3 Missense_Mutation p.R280Q 0.15 deleterious(0.03) benign(0.024) TCGA-CA-5255-01 2 121712926 121712926 C T GLI2 Missense_Mutation p.A188V 0.32 deleterious(0) benign(0.23) TCGA-CA-5255-01 2 175629131 175629131 G A CHRNA1 5'UTR 0.08 TCGA-CA-5255-01 2 224824277 224824277 A G MRPL44 Missense_Mutation p.H69R 0.32 deleterious(0.02) benign(0.217) TCGA-CA-5255-01 2 79384340 79384340 T G REG3A 3'UTR 0.19 TCGA-CA-5255-01 3 128292753 128292753 A G C3orf27 5'UTR 0.09 TCGA-CA-5255-01 3 12857886 12857886 G A CAND2 Silent p.S485S 0.10 TCGA-CA-5255-01 3 160120461 160120461 C T SMC4 Intron 0.12 TCGA-CA-5255-01 3 169502430 169502430 G A MYNN Missense_Mutation p.E502K 0.17 tolerated(0.28) benign(0.104) TCGA-CA-5255-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.27 deleterious(0.02) probably_damaging(0.965) TCGA-CA-5255-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.24 tolerated(0.11) possibly_damaging(0.529) TCGA-CA-5255-01 3 46400465 46400465 G A CCR2 Intron 0.24 TCGA-CA-5255-01 3 49698339 49698339 C T BSN Missense_Mutation p.R3021W 0.16 unknown(0) TCGA-CA-5255-01 4 100229009 100229009 G A ADH1B Silent p.V372V 0.29 TCGA-CA-5255-01 4 114279462 114279462 A G ANK2 Missense_Mutation p.T3230A 0.20 benign(0.001) TCGA-CA-5255-01 4 155506625 155506625 T G FGA Intron 0.24 TCGA-CA-5255-01 4 57182316 57182316 C T KIAA1211 Missense_Mutation p.P883L 0.24 deleterious(0.02) possibly_damaging(0.859) TCGA-CA-5255-01 4 6349732 6349732 C T PPP2R2C Missense_Mutation p.V211M 0.11 deleterious(0.02) probably_damaging(0.973) TCGA-CA-5255-01 5 179227517 179227517 C T MGAT4B Missense_Mutation p.R244Q 0.17 tolerated(0.05) benign(0.108) TCGA-CA-5255-01 6 105178225 105178225 G A HACE1 Silent p.I860I 0.17 TCGA-CA-5255-01 6 160200816 160200816 G A TCP1 Missense_Mutation p.R433W 0.15 deleterious(0) probably_damaging(0.994) TCGA-CA-5255-01 6 24515538 24515538 G A ALDH5A1 Silent p.K303K 0.45 TCGA-CA-5255-01 9 134020107 134020107 T C NUP214 Missense_Mutation p.S579P 0.09 benign(0.192) TCGA-CA-5255-01 X 147582601 147582601 G A AFF2 5'UTR 0.57 TCGA-CA-5255-01 X 40522175 40522175 A G MED14 Splice_Site p.X1228_splice 0.08 TCGA-CA-5256-01 10 114710652 114710652 C A TCF7L2 Nonsense_Mutation p.S46* 0.29 TCGA-CA-5256-01 10 13213065 13213065 G A MCM10 Missense_Mutation p.D51N 0.45 deleterious(0.03) possibly_damaging(0.754) TCGA-CA-5256-01 10 29811393 29811393 G A SVIL Missense_Mutation p.P1112L 0.44 deleterious(0.02) benign(0.002) TCGA-CA-5256-01 10 37508451 37508451 G A ANKRD30A Missense_Mutation p.G1215R 0.35 tolerated(0.94) probably_damaging(0.979) TCGA-CA-5256-01 10 45799453 45799453 G A OR13A1 Missense_Mutation p.R140W 0.48 deleterious(0.02) possibly_damaging(0.507) TCGA-CA-5256-01 11 103908247 103908247 G T DDI1 Nonsense_Mutation p.E233* 0.22 TCGA-CA-5256-01 11 117695454 117695455 GT - FXYD2 5'UTR 0.25 TCGA-CA-5256-01 11 125472721 125472721 A G STT3A Missense_Mutation p.I99V 0.24 tolerated(0.13) benign(0.021) TCGA-CA-5256-01 11 1277906 1277906 A G MUC5B Missense_Mutation p.Q5381R 0.29 unknown(0) TCGA-CA-5256-01 11 46342032 46342032 C T CREB3L1 Silent p.N492N 0.50 TCGA-CA-5256-01 11 46822808 46822808 T G CKAP5 Missense_Mutation p.K342T 0.25 deleterious(0) possibly_damaging(0.491) TCGA-CA-5256-01 11 557995 557995 C T C11orf35 Silent p.T148T 0.16 TCGA-CA-5256-01 12 10074794 10074794 T C CLEC2A Silent p.S59S 0.51 TCGA-CA-5256-01 12 111317740 111317740 A G CCDC63 Missense_Mutation p.T174A 0.09 tolerated(0.4) benign(0.034) TCGA-CA-5256-01 12 129100829 129100829 C A TMEM132C Silent p.S418S 0.47 TCGA-CA-5256-01 12 14923779 14923779 C A HIST4H4 Missense_Mutation p.K80N 0.19 deleterious(0.01) benign(0.329) TCGA-CA-5256-01 12 55863618 55863619 - A OR6C70 Frame_Shift_Ins p.Y102Lfs*18 0.48 TCGA-CA-5256-01 13 23910861 23910861 A T SACS Missense_Mutation p.L2385H 0.15 probably_damaging(0.999) TCGA-CA-5256-01 13 37679590 37679590 C T CSNK1A1L 5'UTR 0.50 TCGA-CA-5256-01 13 60407379 60407379 T G DIAPH3 Missense_Mutation p.Q963H 0.35 tolerated(0.06) benign(0.01) TCGA-CA-5256-01 14 102548143 102548143 T C HSP90AA1 Missense_Mutation p.D824G 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-CA-5256-01 14 69865913 69865913 C T SLC39A9 5'UTR 0.18 TCGA-CA-5256-01 14 73718781 73718781 G A PAPLN Missense_Mutation p.R273H 0.24 tolerated(0.2) benign(0.002) TCGA-CA-5256-01 14 75265409 75265409 C T YLPM1 Nonsense_Mutation p.R1137* 0.21 TCGA-CA-5256-01 14 89220930 89220930 C G EML5 Missense_Mutation p.V95L 0.19 tolerated(0.47) benign(0.007) TCGA-CA-5256-01 14 93708726 93708726 C T BTBD7 Missense_Mutation p.G1098S 0.58 deleterious_low_confidence(0.03) benign(0.009) TCGA-CA-5256-01 15 40265989 40265989 C T EIF2AK4 Intron 0.35 TCGA-CA-5256-01 15 48493637 48493637 G A CTXN2 Missense_Mutation p.R47Q 0.55 deleterious(0.01) probably_damaging(0.988) TCGA-CA-5256-01 15 75980202 75980202 G A CSPG4 Silent p.I1068I 0.34 TCGA-CA-5256-01 16 27751387 27751387 T C KIAA0556 Missense_Mutation p.V590A 0.08 deleterious(0.01) possibly_damaging(0.841) TCGA-CA-5256-01 16 31475792 31475792 C T ARMC5 Missense_Mutation p.P483L 0.43 tolerated(0.18) benign(0.021) TCGA-CA-5256-01 16 31475835 31475835 G A ARMC5 Silent p.S497S 0.41 TCGA-CA-5256-01 16 3304750 3304750 C T MEFV Silent p.A106A 0.36 TCGA-CA-5256-01 16 50707300 50707300 C T SNX20 3'UTR 0.33 TCGA-CA-5256-01 16 51175982 51175982 C T SALL1 Missense_Mutation p.E51K 0.35 deleterious(0) probably_damaging(0.994) TCGA-CA-5256-01 16 70954809 70954809 C T HYDIN Silent p.A2490A 0.43 TCGA-CA-5256-01 16 71951006 71951006 G T IST1 Missense_Mutation p.R122L 0.38 tolerated(0.07) possibly_damaging(0.594) TCGA-CA-5256-01 17 18285882 18285882 T C EVPLL Silent p.D134D 0.80 TCGA-CA-5256-01 17 38938419 38938419 G A KRT27 Silent p.N109N 0.38 TCGA-CA-5256-01 17 45369662 45369662 G A ITGB3 Missense_Mutation p.R473H 0.47 tolerated(0.43) benign(0) TCGA-CA-5256-01 17 59485586 59485586 C T TBX2 Missense_Mutation p.R620C 0.53 deleterious(0) probably_damaging(0.99) TCGA-CA-5256-01 17 67212425 67212425 A G ABCA10 Missense_Mutation p.I202T 0.40 tolerated(1) benign(0.01) TCGA-CA-5256-01 19 1487181 1487181 C T PCSK4 Missense_Mutation p.G272S 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-5256-01 19 18273852 18273854 CTG - PIK3R2 In_Frame_Del p.C396del 0.44 TCGA-CA-5256-01 19 18557205 18557207 GCA - ELL In_Frame_Del p.L539del 0.33 TCGA-CA-5256-01 19 23543504 23543504 T C ZNF91 Silent p.K759K 0.15 TCGA-CA-5256-01 19 59011884 59011884 G A SLC27A5 Missense_Mutation p.L458F 0.26 tolerated(0.58) probably_damaging(0.945) TCGA-CA-5256-01 19 6924760 6924760 C T EMR1 Silent p.I621I 0.46 TCGA-CA-5256-01 19 9088360 9088360 C T MUC16 Missense_Mutation p.G1152D 0.42 unknown(0) TCGA-CA-5256-01 1 113245221 113245221 G A RHOC Silent p.D124D 0.40 TCGA-CA-5256-01 1 182908312 182908312 G A SHCBP1L Nonsense_Mutation p.R359* 0.49 TCGA-CA-5256-01 1 197313502 197313502 C T CRB1 Silent p.C248C 0.20 TCGA-CA-5256-01 1 206331278 206331278 A C CTSE 3'UTR 0.55 TCGA-CA-5256-01 1 20645099 20645099 T C VWA5B1 Silent p.T242T 0.21 TCGA-CA-5256-01 1 36474330 36474330 G A AGO3 Missense_Mutation p.R278Q 0.28 deleterious(0) possibly_damaging(0.458) TCGA-CA-5256-01 20 20232314 20232314 C T C20orf26 Silent p.T745T 0.08 TCGA-CA-5256-01 20 21492921 21492921 C T NKX2-2 Silent p.S154S 0.12 TCGA-CA-5256-01 20 3102361 3102361 C T UBOX5 Silent p.T308T 0.52 TCGA-CA-5256-01 20 33874498 33874498 C T FAM83C Missense_Mutation p.G695E 0.06 tolerated_low_confidence(0.47) benign(0.001) TCGA-CA-5256-01 20 4167474 4167474 G A SMOX Intron 0.19 TCGA-CA-5256-01 20 42744408 42744408 T G JPH2 Missense_Mutation p.K636T 0.17 tolerated(0.14) possibly_damaging(0.781) TCGA-CA-5256-01 21 30318571 30318571 G A LTN1 Nonsense_Mutation p.Q1222* 0.60 TCGA-CA-5256-01 21 46067099 46067099 C A KRTAP10-11 Missense_Mutation p.H242N 0.06 deleterious(0) benign(0.001) TCGA-CA-5256-01 21 46932382 46932382 C T COL18A1 3'UTR 0.53 TCGA-CA-5256-01 22 21343948 21343948 C T LZTR1 Nonsense_Mutation p.R210* 0.30 TCGA-CA-5256-01 2 107040458 107040458 G A RGPD3 Missense_Mutation p.S1322F 0.19 deleterious(0.01) probably_damaging(0.921) TCGA-CA-5256-01 2 11772140 11772140 G A GREB1 Missense_Mutation p.V1573M 0.39 tolerated(0.16) probably_damaging(0.989) TCGA-CA-5256-01 2 141643809 141643809 T C LRP1B Missense_Mutation p.R1288G 0.15 benign(0.152) TCGA-CA-5256-01 2 176959232 176959232 A G HOXD13 Missense_Mutation p.D269G 0.40 deleterious(0) benign(0.022) TCGA-CA-5256-01 2 190636456 190636456 C G ORMDL1 3'UTR 0.20 TCGA-CA-5256-01 2 210518027 210518027 G A MAP2 Missense_Mutation p.A45T 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-5256-01 2 210858050 210858050 T A UNC80 Silent p.P3070P 0.21 TCGA-CA-5256-01 2 242148929 242148929 A G ANO7 Missense_Mutation p.Q467R 0.17 deleterious(0.04) benign(0.039) TCGA-CA-5256-01 3 112356886 112356886 G A CCDC80 Nonsense_Mutation p.R623* 0.42 TCGA-CA-5256-01 3 121187160 121187160 G A POLQ Silent p.P2279P 0.34 TCGA-CA-5256-01 3 125822664 125822664 C G ALDH1L1 Silent p.L903L 0.44 TCGA-CA-5256-01 3 138474704 138474704 G C PIK3CB Missense_Mutation p.R97G 0.19 deleterious(0) probably_damaging(0.971) TCGA-CA-5256-01 3 193855904 193855904 G A HES1 Missense_Mutation p.G242D 0.40 deleterious(0.02) possibly_damaging(0.504) TCGA-CA-5256-01 4 156268978 156268978 G A MAP9 Missense_Mutation p.P634L 0.24 deleterious(0) probably_damaging(0.98) TCGA-CA-5256-01 4 184598623 184598623 C T TRAPPC11 Silent p.T249T 0.28 TCGA-CA-5256-01 4 184930357 184930357 G A STOX2 Silent p.T122T 0.13 TCGA-CA-5256-01 4 42895339 42895339 G A GRXCR1 Missense_Mutation p.R19Q 0.22 deleterious(0.05) probably_damaging(0.996) TCGA-CA-5256-01 5 110427997 110427997 C G WDR36 Missense_Mutation p.T4S 0.25 deleterious_low_confidence(0) benign(0) TCGA-CA-5256-01 5 112151251 112151252 CT - APC Frame_Shift_Del p.S299Cfs*27 0.43 TCGA-CA-5256-01 5 139838267 139838267 C T ANKHD1 Missense_Mutation p.P434S 0.37 unknown(0) TCGA-CA-5256-01 5 16762655 16762655 G A MYO10 Missense_Mutation p.A529V 0.32 deleterious(0.05) possibly_damaging(0.594) TCGA-CA-5256-01 5 169023586 169023586 C T SPDL1 Nonsense_Mutation p.Q305* 0.18 TCGA-CA-5256-01 5 36680557 36680557 C T SLC1A3 Silent p.R385R 0.20 TCGA-CA-5256-01 5 82835880 82835880 C T VCAN Missense_Mutation p.T2353M 0.46 tolerated(0.23) benign(0.042) TCGA-CA-5256-01 6 107390254 107390254 G A BEND3 Missense_Mutation p.P714L 0.37 deleterious(0) possibly_damaging(0.856) TCGA-CA-5256-01 6 163483345 163483345 C T PACRG Missense_Mutation p.P152L 0.38 deleterious(0) possibly_damaging(0.751) TCGA-CA-5256-01 7 154760760 154760760 G T PAXIP1 Missense_Mutation p.A384D 0.10 tolerated_low_confidence(0.28) possibly_damaging(0.532) TCGA-CA-5256-01 7 154760805 154760805 T G PAXIP1 Missense_Mutation p.N369T 0.08 tolerated_low_confidence(0.64) benign(0.053) TCGA-CA-5256-01 7 1733582 1733582 G A AC074389.6 5'UTR 0.57 TCGA-CA-5256-01 7 5352998 5352998 G A TNRC18 Silent p.A2508A 0.09 TCGA-CA-5256-01 7 80387648 80387648 G A SEMA3C Missense_Mutation p.R548W 0.47 deleterious(0) probably_damaging(0.996) TCGA-CA-5256-01 7 91793540 91793540 T G LRRD1 Missense_Mutation p.K326T 0.11 deleterious(0.01) possibly_damaging(0.459) TCGA-CA-5256-01 8 131949324 131949324 G T ADCY8 Silent p.T492T 0.08 TCGA-CA-5256-01 8 144671564 144671564 G A EEF1D Missense_Mutation p.R230W 0.44 deleterious(0.01) possibly_damaging(0.696) TCGA-CA-5256-01 8 89058907 89058907 G A MMP16 Silent p.H493H 0.07 TCGA-CA-5256-01 9 101797398 101797398 C A COL15A1 Missense_Mutation p.P728T 0.42 tolerated(0.09) probably_damaging(0.998) TCGA-CA-5256-01 9 117099535 117099535 C T AKNA Silent p.P1373P 0.43 TCGA-CA-5256-01 9 95060147 95060148 - T NOL8 Frame_Shift_Ins p.D1159Rfs*17 0.26 TCGA-CA-5256-01 X 119602983 119602983 G A LAMP2 Silent p.L14L 0.16 TCGA-CA-5256-01 X 123034433 123034433 T A XIAP Missense_Mutation p.I397N 0.42 deleterious(0.03) benign(0.006) TCGA-CA-5256-01 X 148627259 148627259 G A CXorf40A Missense_Mutation p.R28H 0.18 tolerated(0.23) benign(0.057) TCGA-CA-5256-01 X 153220443 153220443 C T HCFC1 Missense_Mutation p.R1136H 0.46 tolerated_low_confidence(0.18) benign(0.003) TCGA-CA-5256-01 X 30873511 30873511 G - TAB3 Frame_Shift_Del p.Q91Nfs*27 0.16 TCGA-CA-5256-01 X 33146468 33146469 - T DMD Intron 0.38 TCGA-CA-5256-01 X 48417689 48417689 G A TBC1D25 Silent p.L220L 0.23 TCGA-CA-5256-01 X 54783967 54783967 G A ITIH6 Missense_Mutation p.S847F 0.39 tolerated_low_confidence(0.05) benign(0.004) TCGA-CA-5256-01 X 54823498 54823498 G A ITIH6 Missense_Mutation p.T45M 0.37 deleterious(0.04) probably_damaging(0.994) TCGA-CA-5256-01 X 69457010 69457010 G A AWAT1 Silent p.S124S 0.44 TCGA-CA-5256-01 X 71359920 71359920 C T NHSL2 Missense_Mutation p.P841L 0.43 tolerated(0.27) benign(0.016) TCGA-CA-5796-01 10 106982874 106982874 G T SORCS3 Missense_Mutation p.C912F 0.44 deleterious(0.03) probably_damaging(0.976) TCGA-CA-5796-01 10 50185022 50185022 C A WDFY4 Silent p.R3097R 0.11 TCGA-CA-5796-01 10 88730042 88730042 C T ADIRF Intron 0.33 TCGA-CA-5796-01 11 117389195 117389195 C T DSCAML1 Missense_Mutation p.R559Q 0.37 tolerated(0.08) probably_damaging(0.997) TCGA-CA-5796-01 11 55563700 55563700 T A OR5D14 Silent p.I223I 0.38 TCGA-CA-5796-01 11 5757826 5757826 C T OR56B1 Missense_Mutation p.P27L 0.04 deleterious(0.02) possibly_damaging(0.699) TCGA-CA-5796-01 11 65421839 65421839 C T RELA 3'UTR 0.10 TCGA-CA-5796-01 12 108634268 108634268 G A WSCD2 Missense_Mutation p.R431H 0.39 deleterious(0) possibly_damaging(0.858) TCGA-CA-5796-01 12 12814875 12814875 G A GPR19 Missense_Mutation p.P170S 0.37 deleterious(0) probably_damaging(1) TCGA-CA-5796-01 12 130845926 130845926 G A PIWIL1 Splice_Site p.X622_splice 0.22 TCGA-CA-5796-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.43 deleterious(0) possibly_damaging(0.479) TCGA-CA-5796-01 12 7083817 7083817 G A EMG1 Missense_Mutation p.R124Q 0.14 deleterious(0) TCGA-CA-5796-01 13 20796729 20796729 C A GJB6 3'UTR 0.41 TCGA-CA-5796-01 14 38311391 38311391 A G TTC6 Silent p.V1852V 0.56 TCGA-CA-5796-01 14 74995786 74995786 C T LTBP2 Missense_Mutation p.R676Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-CA-5796-01 14 86089457 86089457 G A FLRT2 Silent p.T533T 0.40 TCGA-CA-5796-01 15 48782270 48782270 G A FBN1 Missense_Mutation p.R954C 0.44 probably_damaging(0.998) TCGA-CA-5796-01 15 99673301 99673301 C T SYNM 3'UTR 0.67 TCGA-CA-5796-01 16 31497134 31497134 C T SLC5A2 Missense_Mutation p.R130C 0.49 deleterious(0.01) probably_damaging(0.953) TCGA-CA-5796-01 17 11872818 11872818 G T DNAH9 Nonsense_Mutation p.G4479* 0.52 TCGA-CA-5796-01 17 2274694 2274694 G C SGSM2 Missense_Mutation p.S521T 0.29 tolerated(0.75) benign(0.007) TCGA-CA-5796-01 17 28539762 28539762 G A SLC6A4 Silent p.D400D 0.42 TCGA-CA-5796-01 17 37223945 37223945 C T PLXDC1 3'UTR 0.53 TCGA-CA-5796-01 17 56492891 56492891 C - RNF43 Frame_Shift_Del p.L17* 0.76 TCGA-CA-5796-01 17 57046996 57046996 C T PPM1E Missense_Mutation p.R294C 0.05 deleterious(0.01) probably_damaging(0.939) TCGA-CA-5796-01 18 3084024 3084024 G A MYOM1 Silent p.A1447A 0.46 TCGA-CA-5796-01 18 48591889 48591889 A G SMAD4 Missense_Mutation p.D351G 0.39 deleterious(0.04) probably_damaging(1) TCGA-CA-5796-01 18 48604724 48604724 C T SMAD4 Nonsense_Mutation p.Q516* 0.37 TCGA-CA-5796-01 18 57115282 57115282 G A CCBE1 Silent p.D236D 0.40 TCGA-CA-5796-01 19 11303706 11303706 G A KANK2 Silent p.P350P 0.33 TCGA-CA-5796-01 19 12936716 12936716 G A RTBDN Missense_Mutation p.S197L 0.15 tolerated(0.05) benign(0.235) TCGA-CA-5796-01 19 18376104 18376106 ATC - KIAA1683 In_Frame_Del p.I749del 0.33 TCGA-CA-5796-01 19 3179116 3179116 G A S1PR4 Missense_Mutation p.R109H 0.29 tolerated(0.29) benign(0.007) TCGA-CA-5796-01 19 3544718 3544718 G C MFSD12 Intron 0.34 TCGA-CA-5796-01 19 4033529 4033529 T C PIAS4 Missense_Mutation p.C365R 0.39 deleterious(0) probably_damaging(1) TCGA-CA-5796-01 19 55054853 55054853 G A KIR3DX1 3'UTR 0.20 TCGA-CA-5796-01 19 56369610 56369610 C T NLRP4 Missense_Mutation p.P284L 0.17 tolerated(0.75) benign(0.018) TCGA-CA-5796-01 19 763533 763533 G A MISP Silent p.K661K 0.45 TCGA-CA-5796-01 1 100159602 100159603 - A PALMD Frame_Shift_Ins p.V550Gfs*10 0.31 TCGA-CA-5796-01 1 103345258 103345258 G T COL11A1 Missense_Mutation p.T1752K 0.06 unknown(0) TCGA-CA-5796-01 1 110121837 110121837 G A GNAI3 Silent p.R105R 0.04 TCGA-CA-5796-01 1 156883780 156883780 C A PEAR1 Silent p.P950P 0.40 TCGA-CA-5796-01 1 170967549 170967549 C A MROH9 Intron 0.11 TCGA-CA-5796-01 1 19611180 19611180 C T AKR7A3 Missense_Mutation p.R235H 0.32 deleterious(0) benign(0.074) TCGA-CA-5796-01 1 29606613 29606613 G A PTPRU Missense_Mutation p.V610M 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-5796-01 1 32669813 32669813 G A CCDC28B Missense_Mutation p.E120K 0.11 deleterious(0) probably_damaging(0.978) TCGA-CA-5796-01 1 40092692 40092692 G A HEYL Silent p.A158A 0.21 TCGA-CA-5796-01 20 13251309 13251309 C A ISM1 Missense_Mutation p.F99L 0.10 tolerated(0.19) benign(0) TCGA-CA-5796-01 20 3052263 3052263 G A OXT 5'Flank 0.55 TCGA-CA-5796-01 20 32345070 32345070 C T ZNF341 Silent p.T286T 0.26 TCGA-CA-5796-01 20 34543008 34543008 A G SCAND1 5'UTR 0.09 TCGA-CA-5796-01 20 51870469 51870469 C T TSHZ2 Nonsense_Mutation p.R158* 0.42 TCGA-CA-5796-01 22 41536167 41536167 C T EP300 Missense_Mutation p.P595L 0.34 unknown(0) TCGA-CA-5796-01 22 42949931 42949931 C T SERHL2 5'UTR 0.33 TCGA-CA-5796-01 22 50688672 50688672 A G HDAC10 Intron 0.17 TCGA-CA-5796-01 22 51159737 51159737 C T SHANK3 Missense_Mutation p.P1175L 0.36 benign(0.101) TCGA-CA-5796-01 2 163130455 163130455 C A IFIH1 Splice_Site p.X769_splice 0.40 TCGA-CA-5796-01 2 179447924 179447924 A G TTN Missense_Mutation p.M21869T 0.32 TCGA-CA-5796-01 2 182344981 182344981 G T ITGA4 Nonsense_Mutation p.G248* 0.20 TCGA-CA-5796-01 2 237405855 237405855 G A IQCA1 Missense_Mutation p.T96M 0.51 deleterious(0) benign(0.075) TCGA-CA-5796-01 2 74462282 74462282 G A SLC4A5 Silent p.I793I 0.40 TCGA-CA-5796-01 2 95539240 95539240 G A TEKT4 Intron 0.41 TCGA-CA-5796-01 2 99614580 99614580 A T TSGA10 3'UTR 0.43 TCGA-CA-5796-01 3 125787043 125787043 C T SLC41A3 Missense_Mutation p.R7Q 0.53 tolerated(0.08) benign(0.256) TCGA-CA-5796-01 3 157823862 157823862 C G SHOX2 5'UTR 0.44 TCGA-CA-5796-01 3 35785989 35785989 G A ARPP21 Intron 0.71 TCGA-CA-5796-01 3 38738999 38738999 T C SCN10A Silent p.V1904V 0.10 TCGA-CA-5796-01 3 49162243 49162243 A G LAMB2 Silent p.C1000C 0.39 TCGA-CA-5796-01 4 111397979 111397979 C T ENPEP Missense_Mutation p.R137W 0.47 deleterious(0) probably_damaging(0.999) TCGA-CA-5796-01 4 119951693 119951693 C T SYNPO2 Missense_Mutation p.T588M 0.44 deleterious(0.05) possibly_damaging(0.79) TCGA-CA-5796-01 4 122078287 122078287 G T TNIP3 Missense_Mutation p.Q186K 0.16 tolerated(0.99) benign(0.051) TCGA-CA-5796-01 4 126336086 126336086 G A FAT4 Missense_Mutation p.G1990R 0.39 possibly_damaging(0.814) TCGA-CA-5796-01 4 38907144 38907144 T G FAM114A1 Silent p.G146G 0.35 TCGA-CA-5796-01 4 38907415 38907415 C T FAM114A1 Missense_Mutation p.P197L 0.47 tolerated(0.12) benign(0.141) TCGA-CA-5796-01 4 88989098 88989098 C T PKD2 Nonsense_Mutation p.R803* 0.45 TCGA-CA-5796-01 5 138657699 138657699 A G MATR3 Missense_Mutation p.Y572C 0.43 deleterious(0) probably_damaging(0.993) TCGA-CA-5796-01 5 180043408 180043408 G A FLT4 Missense_Mutation p.R1060W 0.44 deleterious(0) probably_damaging(1) TCGA-CA-5796-01 5 42711413 42711413 C T GHR Silent p.G241G 0.42 TCGA-CA-5796-01 6 33148087 33148087 A G COL11A2 Missense_Mutation p.L350P 0.54 possibly_damaging(0.883) TCGA-CA-5796-01 6 35392306 35392306 C T PPARD Silent p.N276N 0.44 TCGA-CA-5796-01 6 38834432 38834432 T C DNAH8 Silent p.A1971A 0.39 TCGA-CA-5796-01 6 7585489 7585489 C T DSP Missense_Mutation p.T2665M 0.40 possibly_damaging(0.908) TCGA-CA-5796-01 7 103126801 103126801 C T RELN Missense_Mutation p.A3276T 0.29 tolerated(0.25) benign(0.029) TCGA-CA-5796-01 7 12728422 12728422 A G ARL4A Silent p.K181K 0.30 TCGA-CA-5796-01 7 2962788 2962788 C T CARD11 Missense_Mutation p.R707H 0.21 tolerated(0.12) benign(0.004) TCGA-CA-5796-01 8 68981308 68981308 T C PREX2 Silent p.Y460Y 0.25 TCGA-CA-5796-01 8 77618452 77618452 C A ZFHX4 Missense_Mutation p.T710N 0.38 possibly_damaging(0.607) TCGA-CA-5796-01 9 2807853 2807853 G C KIAA0020 Missense_Mutation p.S592C 0.26 deleterious(0.04) benign(0.029) TCGA-CA-5796-01 9 32784384 32784384 A T TMEM215 Missense_Mutation p.K68M 0.21 deleterious(0) possibly_damaging(0.79) TCGA-CA-5796-01 9 35108001 35108001 G A FAM214B Silent p.L91L 0.27 TCGA-CA-5796-01 9 5231623 5231623 C T INSL4 Nonsense_Mutation p.R34* 0.60 TCGA-CA-5796-01 9 69200321 69200321 C T FOXD4L6 3'UTR 0.29 TCGA-CA-5796-01 X 11778982 11778982 G A MSL3 Missense_Mutation p.R103H 0.40 tolerated(0.14) benign(0.001) TCGA-CA-5796-01 X 119737865 119737865 C T MCTS1 5'Flank 0.56 TCGA-CA-5796-01 X 122802127 122802127 T G THOC2 Missense_Mutation p.K300N 0.36 tolerated(0.11) benign(0.179) TCGA-CA-5796-01 X 134292171 134292171 T A CT55 Missense_Mutation p.I164F 0.42 tolerated(0.75) benign(0.013) TCGA-CA-5796-01 X 154157728 154157728 C T F8 Missense_Mutation p.G1446E 0.33 tolerated(0.96) benign(0.04) TCGA-CA-5796-01 X 70339251 70339251 A C MED12 Missense_Mutation p.Q43P 0.20 probably_damaging(0.995) TCGA-CA-5796-01 X 70800722 70800722 C T ACRC Silent p.D17D 0.38 TCGA-CA-5797-01 10 104597014 104597014 G C CYP17A1 Silent p.P35P 0.28 TCGA-CA-5797-01 10 115537257 115537257 G A PLEKHS1 Missense_Mutation p.R419Q 0.28 tolerated_low_confidence(0.62) benign(0) TCGA-CA-5797-01 10 5435796 5435796 G A TUBAL3 Missense_Mutation p.T342M 0.31 tolerated_low_confidence(0.16) benign(0.002) TCGA-CA-5797-01 11 19372530 19372530 C T NAV2 Nonsense_Mutation p.Q11* 0.04 TCGA-CA-5797-01 11 33065349 33065349 A - TCP11L1 Frame_Shift_Del p.N11Mfs*30 0.40 TCGA-CA-5797-01 11 59610558 59610558 C T GIF Missense_Mutation p.D105N 0.47 tolerated(0.25) benign(0.139) TCGA-CA-5797-01 11 62932013 62932013 A T SLC22A25 Missense_Mutation p.I460N 0.59 deleterious(0.03) possibly_damaging(0.82) TCGA-CA-5797-01 11 64120574 64120574 G T CCDC88B Missense_Mutation p.Q1183H 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-5797-01 11 64375168 64375168 G A NRXN2 Missense_Mutation p.P1547S 0.45 tolerated_low_confidence(0.12) benign(0.166) TCGA-CA-5797-01 11 64621945 64621945 C T EHD1 Missense_Mutation p.D489N 0.44 deleterious(0) probably_damaging(0.999) TCGA-CA-5797-01 11 8474433 8474433 C T STK33 Silent p.A269A 0.19 TCGA-CA-5797-01 12 118462669 118462669 C T RFC5 Silent p.F145F 0.61 TCGA-CA-5797-01 12 14930333 14930333 A C H2AFJ 3'UTR 0.33 TCGA-CA-5797-01 12 14975966 14975966 C G C12orf60 Missense_Mutation p.L33V 0.11 deleterious(0.05) possibly_damaging(0.822) TCGA-CA-5797-01 12 27133513 27133513 G C TM7SF3 Missense_Mutation p.P341R 0.11 tolerated(0.52) benign(0.364) TCGA-CA-5797-01 14 23899059 23899059 C T MYH7 Missense_Mutation p.A355T 0.33 deleterious(0) probably_damaging(0.965) TCGA-CA-5797-01 15 20644873 20644873 C T HERC2P3 RNA 0.11 TCGA-CA-5797-01 15 54825265 54825265 G A UNC13C Splice_Site p.X1899_splice 0.53 TCGA-CA-5797-01 15 64005571 64005571 C T HERC1 Missense_Mutation p.G1482R 0.23 benign(0.094) TCGA-CA-5797-01 15 65451079 65451079 C T CLPX Silent p.Q242Q 0.50 TCGA-CA-5797-01 16 2301531 2301532 CG - ECI1 Frame_Shift_Del p.V13Sfs*75 0.43 TCGA-CA-5797-01 16 2814598 2814598 G T SRRM2 Nonsense_Mutation p.G1357* 0.37 TCGA-CA-5797-01 16 318854 318854 G C ITFG3 Silent p.T509T 0.18 TCGA-CA-5797-01 16 46781676 46781676 C T MYLK3 Missense_Mutation p.G144R 0.24 deleterious(0) probably_damaging(0.951) TCGA-CA-5797-01 16 732653 732654 - TCG JMJD8 3'UTR 0.18 TCGA-CA-5797-01 16 77317955 77317955 G T ADAMTS18 Nonsense_Mutation p.C1188* 0.40 TCGA-CA-5797-01 17 18331793 18331793 C T KRT17P2 RNA 0.64 TCGA-CA-5797-01 17 41247864 41247864 C G BRCA1 Missense_Mutation p.K223N 0.09 deleterious(0.04) possibly_damaging(0.574) TCGA-CA-5797-01 17 54559775 54559775 T G ANKFN1 Missense_Mutation p.F720C 0.34 deleterious(0) possibly_damaging(0.754) TCGA-CA-5797-01 17 63533902 63533902 G A AXIN2 Missense_Mutation p.P418S 0.17 tolerated(0.23) benign(0.039) TCGA-CA-5797-01 17 63533903 63533903 C A AXIN2 Silent p.A417A 0.17 TCGA-CA-5797-01 17 73221462 73221462 A G NUP85 Missense_Mutation p.E253G 0.09 deleterious(0) probably_damaging(0.969) TCGA-CA-5797-01 17 7578550 7578550 G A TP53 Missense_Mutation p.S127F 0.77 deleterious(0) probably_damaging(1) TCGA-CA-5797-01 18 50734097 50734097 T A DCC Missense_Mutation p.F591I 0.12 deleterious(0.03) probably_damaging(0.976) TCGA-CA-5797-01 19 37314236 37314236 C T ZNF790 Silent p.G60G 0.19 TCGA-CA-5797-01 19 39879772 39879772 G A PAF1 Silent p.I176I 0.47 TCGA-CA-5797-01 19 4794458 4794458 C T FEM1A 3'UTR 0.33 TCGA-CA-5797-01 19 7681485 7681485 C T CAMSAP3 Silent p.L1090L 0.43 TCGA-CA-5797-01 1 109773506 109773506 G T SARS Missense_Mutation p.D152Y 0.10 deleterious(0) possibly_damaging(0.474) TCGA-CA-5797-01 1 1245227 1245227 A G PUSL1 Missense_Mutation p.S214G 0.09 tolerated(0.3) benign(0.023) TCGA-CA-5797-01 1 153924884 153924884 G A CRTC2 Silent p.V247V 0.21 TCGA-CA-5797-01 1 159558407 159558407 G T APCS Missense_Mutation p.G194V 0.15 deleterious(0) possibly_damaging(0.621) TCGA-CA-5797-01 1 197024862 197024862 G A F13B Missense_Mutation p.S446F 0.25 tolerated(0.07) possibly_damaging(0.866) TCGA-CA-5797-01 1 200817997 200817997 C T CAMSAP2 Silent p.T700T 0.25 TCGA-CA-5797-01 1 244615053 244615053 C A ADSS Missense_Mutation p.A23S 0.10 tolerated(0.76) benign(0.002) TCGA-CA-5797-01 1 248344093 248344093 C T OR2M2 Missense_Mutation p.T269M 0.21 tolerated(0.08) benign(0.223) TCGA-CA-5797-01 1 248344321 248344321 A G OR2M2 Missense_Mutation p.Y345C 0.10 deleterious_low_confidence(0) unknown(0) TCGA-CA-5797-01 1 27106730 27106730 C T ARID1A Missense_Mutation p.P2114L 0.62 probably_damaging(0.96) TCGA-CA-5797-01 1 46206873 46206873 T C IPP Missense_Mutation p.I142V 0.52 tolerated(0.21) benign(0.012) TCGA-CA-5797-01 1 55557715 55557715 G A USP24 Missense_Mutation p.R2179W 0.44 deleterious(0) possibly_damaging(0.847) TCGA-CA-5797-01 1 76356378 76356378 C A MSH4 Intron 0.09 TCGA-CA-5797-01 20 3652903 3652903 G T ADAM33 Missense_Mutation p.S492Y 0.16 deleterious(0) probably_damaging(1) TCGA-CA-5797-01 20 36997753 36997753 G A LBP Missense_Mutation p.A366T 0.06 deleterious(0.04) possibly_damaging(0.612) TCGA-CA-5797-01 22 43926712 43926712 C T EFCAB6 Missense_Mutation p.V1456I 0.25 tolerated(0.17) benign(0.438) TCGA-CA-5797-01 22 46704300 46704300 G A GTSE1 Silent p.P74P 0.31 TCGA-CA-5797-01 2 1271214 1271214 G A SNTG2 Silent p.R385R 0.30 TCGA-CA-5797-01 2 138724735 138724735 C T HNMT Intron 0.18 TCGA-CA-5797-01 2 178081646 178081647 - T HNRNPA3 Frame_Shift_Ins p.Y267Lfs*2 0.40 TCGA-CA-5797-01 2 179825960 179825960 G C CCDC141 Missense_Mutation p.N259K 0.29 deleterious(0.03) benign(0.045) TCGA-CA-5797-01 2 31133845 31133845 G A GALNT14 Silent p.T532T 0.28 TCGA-CA-5797-01 2 43452491 43452492 - T ZFP36L2 Frame_Shift_Ins p.S151Yfs*323 0.40 TCGA-CA-5797-01 2 44051494 44051494 C A ABCG5 Missense_Mutation p.A328S 0.48 tolerated(0.1) benign(0.039) TCGA-CA-5797-01 2 80874848 80874848 T A CTNNA2 Missense_Mutation p.S857T 0.25 tolerated(0.41) benign(0.333) TCGA-CA-5797-01 3 145914459 145914459 G A PLSCR4 Missense_Mutation p.P249L 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-CA-5797-01 3 194392843 194392843 T G LSG1 Missense_Mutation p.M17L 0.33 tolerated(0.06) benign(0) TCGA-CA-5797-01 3 5024744 5024744 G A BHLHE40 Silent p.K202K 0.32 TCGA-CA-5797-01 4 109734889 109734889 C A COL25A1 3'UTR 0.27 TCGA-CA-5797-01 4 123140712 123140712 G A KIAA1109 Missense_Mutation p.R822H 0.03 probably_damaging(0.972) TCGA-CA-5797-01 4 185616054 185616057 TTTG - PRIMPOL 3'UTR 0.50 TCGA-CA-5797-01 4 26483455 26483455 G A CCKAR Silent p.C364C 0.29 TCGA-CA-5797-01 4 70346358 70346358 T C UGT2B4 Silent p.R527R 0.11 TCGA-CA-5797-01 4 82031627 82031627 G C PRKG2 Missense_Mutation p.L639V 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-5797-01 5 112154998 112154998 G A APC Nonsense_Mutation p.W423* 0.32 TCGA-CA-5797-01 5 112175350 112175351 - TTTTT APC Frame_Shift_Ins p.S1355Ffs*62 0.31 TCGA-CA-5797-01 5 139221969 139221969 T C PSD2 Silent p.S742S 0.31 TCGA-CA-5797-01 5 140565650 140565650 T C PCDHB16 3'UTR 0.26 TCGA-CA-5797-01 5 140772680 140772680 G A PCDHGA8 Silent p.P100P 0.55 TCGA-CA-5797-01 5 148406963 148406963 G T SH3TC2 Missense_Mutation p.H778N 0.16 tolerated(0.3) benign(0.058) TCGA-CA-5797-01 5 32406876 32406876 T A ZFR Intron 0.11 TCGA-CA-5797-01 6 147038682 147038682 A C ADGB Missense_Mutation p.I647L 0.05 deleterious(0.01) benign(0.285) TCGA-CA-5797-01 6 26246947 26246947 C T HIST1H4G Missense_Mutation p.V87M 0.43 deleterious(0.03) possibly_damaging(0.529) TCGA-CA-5797-01 6 97562261 97562261 C G KLHL32 Silent p.R410R 0.15 TCGA-CA-5797-01 6 97594754 97594754 A T MMS22L Nonsense_Mutation p.Y1220* 0.23 TCGA-CA-5797-01 7 11676550 11676550 C T THSD7A Missense_Mutation p.G77R 0.17 deleterious(0) probably_damaging(0.996) TCGA-CA-5797-01 7 99159593 99159593 C T ZNF655 Intron 0.56 TCGA-CA-5797-01 8 37996372 37996372 G A ASH2L Silent p.P586P 0.21 TCGA-CA-5797-01 8 86569847 86569847 C T REXO1L1P 3'UTR 0.22 TCGA-CA-5797-01 8 92212982 92212982 G A LRRC69 Missense_Mutation p.V299I 0.14 tolerated(0.68) benign(0) TCGA-CA-5797-01 9 135601070 135601070 A G AK8 3'UTR 0.08 TCGA-CA-5797-01 9 6550883 6550883 G A GLDC Missense_Mutation p.T830M 0.58 deleterious(0) possibly_damaging(0.847) TCGA-CA-5797-01 9 84547575 84547575 G C RP11-383M4.6 Intron 0.11 TCGA-CA-5797-01 X 129148488 129148488 C T BCORL1 Silent p.P580P 0.35 TCGA-CA-5797-01 X 144909223 144909223 T - TMEM257 Frame_Shift_Del p.S10Hfs*16 0.45 TCGA-CA-5797-01 X 152813423 152813423 G C ATP2B3 Missense_Mutation p.K363N 0.36 deleterious(0) probably_damaging(0.997) TCGA-CA-5797-01 X 154348278 154348278 T G BRCC3 Missense_Mutation p.F268L 0.08 tolerated(0.15) benign(0.126) TCGA-CA-5797-01 X 90689778 90689778 C T PABPC5 5'Flank 0.42 TCGA-CA-5797-01 X 91090295 91090295 A G PCDH11X 5'UTR 0.74 TCGA-CA-6715-01 10 115534083 115534083 T C PLEKHS1 Missense_Mutation p.M251T 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-CA-6715-01 10 120792739 120792740 CT - NANOS1 3'UTR 0.31 TCGA-CA-6715-01 10 134694395 134694395 C T TTC40 Missense_Mutation p.D1257N 0.33 tolerated(0.34) benign(0.043) TCGA-CA-6715-01 10 55570413 55570413 G T PCDH15 Missense_Mutation p.P1469H 0.45 benign(0.002) TCGA-CA-6715-01 10 55582606 55582606 G T PCDH15 Missense_Mutation p.T1629K 0.37 tolerated_low_confidence(0.59) benign(0.004) TCGA-CA-6715-01 10 74995023 74995023 A G FAM149B1 Missense_Mutation p.R517G 0.11 deleterious(0) benign(0.135) TCGA-CA-6715-01 11 103907674 103907674 G A DDI1 Missense_Mutation p.V42I 0.56 deleterious(0.04) benign(0.041) TCGA-CA-6715-01 11 105774677 105774677 G T GRIA4 Missense_Mutation p.Q341H 0.45 tolerated(0.47) benign(0.123) TCGA-CA-6715-01 11 108106511 108106514 TTCT - ATM Frame_Shift_Del p.S151* 0.42 TCGA-CA-6715-01 11 110450704 110450704 G T ARHGAP20 Missense_Mutation p.S989Y 0.44 deleterious(0) possibly_damaging(0.907) TCGA-CA-6715-01 11 118277759 118277759 A - ATP5L Frame_Shift_Del p.I56* 0.20 TCGA-CA-6715-01 11 45926273 45926273 C T MAPK8IP1 Missense_Mutation p.A594V 0.57 tolerated(0.16) possibly_damaging(0.871) TCGA-CA-6715-01 11 57512550 57512550 T C BTBD18 Missense_Mutation p.T399A 0.10 tolerated(0.35) benign(0.003) TCGA-CA-6715-01 11 64802605 64802605 G A SNX15 Silent p.P149P 0.28 TCGA-CA-6715-01 11 6638062 6638062 T C TPP1 Missense_Mutation p.D239G 0.52 deleterious(0) probably_damaging(0.996) TCGA-CA-6715-01 11 67223007 67223007 C T CABP4 Missense_Mutation p.T38I 0.81 tolerated(0.05) benign(0.08) TCGA-CA-6715-01 11 75439974 75439974 C T MOGAT2 Missense_Mutation p.R264C 0.40 deleterious(0.05) probably_damaging(0.996) TCGA-CA-6715-01 12 102811573 102811573 T C IGF1 3'UTR 0.43 TCGA-CA-6715-01 12 22059128 22059128 C G ABCC9 Missense_Mutation p.S517T 0.41 tolerated(0.27) benign(0.005) TCGA-CA-6715-01 12 52370252 52370252 A G ACVR1B Missense_Mutation p.N158S 0.10 tolerated(0.6) possibly_damaging(0.615) TCGA-CA-6715-01 12 54792403 54792403 T A ITGA5 Missense_Mutation p.Q974L 0.54 tolerated(0.31) benign(0.184) TCGA-CA-6715-01 12 57873629 57873629 G A ARHGAP9 5'UTR 0.44 TCGA-CA-6715-01 12 76461152 76461152 T C NAP1L1 Missense_Mutation p.S69G 0.16 deleterious(0.04) benign(0.033) TCGA-CA-6715-01 13 110835439 110835439 G A COL4A1 Nonsense_Mutation p.R666* 0.24 TCGA-CA-6715-01 13 36686086 36686086 G T DCLK1 Missense_Mutation p.Q215K 0.40 deleterious(0.01) unknown(0) TCGA-CA-6715-01 13 61985633 61985633 C A PCDH20 Nonsense_Mutation p.E867* 0.28 TCGA-CA-6715-01 13 66878822 66878822 C A PCDH9 Missense_Mutation p.G1227C 0.26 tolerated(0.13) benign(0.001) TCGA-CA-6715-01 14 24687272 24687272 C T NEDD8 Intron 0.90 TCGA-CA-6715-01 14 55512585 55512585 G A SOCS4 3'UTR 0.75 TCGA-CA-6715-01 14 75278387 75278387 T C YLPM1 Missense_Mutation p.S1765P 0.13 benign(0.084) TCGA-CA-6715-01 15 42442951 42442951 A G PLA2G4F Missense_Mutation p.V209A 0.10 deleterious(0.01) benign(0.018) TCGA-CA-6715-01 15 43820929 43820929 G A MAP1A Missense_Mutation p.G2420R 0.32 possibly_damaging(0.823) TCGA-CA-6715-01 15 72978581 72978581 A G BBS4 Missense_Mutation p.R5G 0.50 tolerated_low_confidence(0.26) benign(0) TCGA-CA-6715-01 15 74290798 74290798 C T PML Missense_Mutation p.R195C 0.32 deleterious(0.03) benign(0.081) TCGA-CA-6715-01 15 75249358 75249358 T C RPP25 5'UTR 0.11 TCGA-CA-6715-01 16 14748940 14748940 C A BFAR Missense_Mutation p.T219K 0.40 tolerated(0.25) possibly_damaging(0.752) TCGA-CA-6715-01 16 20480912 20480912 C A ACSM2A Missense_Mutation p.A156D 0.35 deleterious(0) probably_damaging(0.986) TCGA-CA-6715-01 16 32264931 32264931 C A TP53TG3D Missense_Mutation p.S86Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-CA-6715-01 16 49671814 49671814 G A ZNF423 Missense_Mutation p.R417W 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-CA-6715-01 16 50664760 50664760 G A NKD1 Missense_Mutation p.A212T 0.29 tolerated(0.53) benign(0.423) TCGA-CA-6715-01 16 71515998 71515998 T A ZNF19 Missense_Mutation p.K7I 0.38 tolerated(0.1) benign(0.088) TCGA-CA-6715-01 16 75147507 75147507 C T LDHD Missense_Mutation p.E361K 0.32 deleterious(0.01) benign(0.258) TCGA-CA-6715-01 16 89703932 89703934 CAA - DPEP1 In_Frame_Del p.N276del 0.39 TCGA-CA-6715-01 16 89936570 89936570 G A SPIRE2 Missense_Mutation p.V679M 0.48 deleterious(0) probably_damaging(1) TCGA-CA-6715-01 17 14248727 14248727 G T HS3ST3B1 Missense_Mutation p.D313Y 0.45 deleterious(0) probably_damaging(0.978) TCGA-CA-6715-01 17 1584913 1584913 G C PRPF8 Missense_Mutation p.A242G 0.84 tolerated(0.23) benign(0.003) TCGA-CA-6715-01 17 40318458 40318458 C T KCNH4 Missense_Mutation p.R566Q 0.56 deleterious(0) probably_damaging(0.998) TCGA-CA-6715-01 17 42882844 42882844 G T GJC1 Missense_Mutation p.S114R 0.32 tolerated(1) benign(0) TCGA-CA-6715-01 17 56387924 56387924 G A BZRAP1 Silent p.T1216T 0.24 TCGA-CA-6715-01 17 6553391 6553391 G A MED31 Silent p.A38A 0.82 TCGA-CA-6715-01 17 72297184 72297184 G T DNAI2 Splice_Site p.X289_splice 0.35 TCGA-CA-6715-01 17 7578211 7578211 C T TP53 Missense_Mutation p.R213Q 0.79 deleterious(0) probably_damaging(1) TCGA-CA-6715-01 17 8707425 8707425 C T PIK3R6 Missense_Mutation p.R680Q 0.73 tolerated(0.42) benign(0) TCGA-CA-6715-01 18 43262611 43262611 C T SLC14A2 3'UTR 0.90 TCGA-CA-6715-01 19 12575035 12575035 C T ZNF709 Silent p.K567K 0.28 TCGA-CA-6715-01 19 12575053 12575053 C T ZNF709 Silent p.E561E 0.17 TCGA-CA-6715-01 19 14677051 14677051 T C NDUFB7 Missense_Mutation p.E103G 0.44 tolerated(0.06) benign(0.167) TCGA-CA-6715-01 19 15852443 15852443 C T OR10H3 Missense_Mutation p.R81C 0.43 deleterious(0.03) benign(0.014) TCGA-CA-6715-01 19 16628107 16628107 C T C19orf44 Silent p.L657L 0.46 TCGA-CA-6715-01 19 1796767 1796767 G A ATP8B3 Missense_Mutation p.R566C 0.45 deleterious(0) probably_damaging(0.998) TCGA-CA-6715-01 19 22574746 22574746 C T ZNF98 Missense_Mutation p.E431K 0.20 tolerated(0.06) probably_damaging(0.991) TCGA-CA-6715-01 19 39359725 39359725 A G RINL 3'UTR 0.12 TCGA-CA-6715-01 19 41884248 41884248 C T TMEM91 Missense_Mutation p.P12S 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CA-6715-01 19 4283117 4283117 A G SHD Missense_Mutation p.D157G 0.12 tolerated(0.81) benign(0.001) TCGA-CA-6715-01 19 54932466 54932466 C G TTYH1 Missense_Mutation p.I107M 0.47 deleterious(0) possibly_damaging(0.855) TCGA-CA-6715-01 19 9298181 9298181 A C OR7D2 3'UTR 0.58 TCGA-CA-6715-01 1 109742544 109742544 C T KIAA1324 Missense_Mutation p.P857L 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6715-01 1 115222288 115222288 T C AMPD1 Missense_Mutation p.K303R 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-CA-6715-01 1 197072753 197072753 T - ASPM Frame_Shift_Del p.A1877Lfs*2 0.27 TCGA-CA-6715-01 1 207649645 207649645 G A CR2 Missense_Mutation p.R928Q 0.56 tolerated(0.3) benign(0.056) TCGA-CA-6715-01 1 249143336 249143336 T A ZNF672 3'UTR 0.25 TCGA-CA-6715-01 1 91788555 91788555 C A HFM1 Splice_Site p.X845_splice 0.42 TCGA-CA-6715-01 1 93812347 93812347 C A DR1 Missense_Mutation p.L49I 0.52 deleterious(0.02) possibly_damaging(0.68) TCGA-CA-6715-01 1 9781210 9781210 C T PIK3CD Missense_Mutation p.P572L 0.49 deleterious(0) probably_damaging(0.979) TCGA-CA-6715-01 20 21686377 21686377 G T PAX1 Silent p.S9S 0.20 TCGA-CA-6715-01 20 24524066 24524066 C T SYNDIG1 Silent p.C111C 0.42 TCGA-CA-6715-01 20 34117068 34117068 G T C20orf173 Missense_Mutation p.D45E 0.13 deleterious(0.05) benign(0) TCGA-CA-6715-01 20 34542841 34542854 GGAGGGGCCCATCT - SCAND1 5'UTR 0.13 TCGA-CA-6715-01 20 43550282 43550282 C T PABPC1L Silent p.Y262Y 0.48 TCGA-CA-6715-01 20 50769415 50769415 G A ZFP64 Missense_Mutation p.S439L 0.16 deleterious(0.04) benign(0.055) TCGA-CA-6715-01 22 21965174 21965179 TCAGAA - UBE2L3 In_Frame_Del p.R110_I111del 0.28 TCGA-CA-6715-01 2 234590948 234590975 CAAATTGCAGGAGTTTGTTTAATGACCG TCAAATTGCAGGAGTTTGTTTAAGGACAA UGT1A7 Nonsense_Mutation p.S122Ffs*8 0.27 TCGA-CA-6715-01 2 31168663 31168663 G A GALNT14 Missense_Mutation p.S248L 0.59 deleterious(0) possibly_damaging(0.559) TCGA-CA-6715-01 2 39025253 39025253 G A DHX57 3'UTR 0.38 TCGA-CA-6715-01 2 74274665 74274665 G C TET3 Missense_Mutation p.E406Q 0.41 deleterious(0.02) benign(0.362) TCGA-CA-6715-01 2 74641661 74641661 G A C2orf81 Missense_Mutation p.P521L 0.26 tolerated(0.07) benign(0.08) TCGA-CA-6715-01 2 85785625 85785625 G A GGCX Silent p.N159N 0.35 TCGA-CA-6715-01 3 100962874 100962874 C A IMPG2 Missense_Mutation p.K767N 0.44 tolerated(0.1) benign(0.051) TCGA-CA-6715-01 3 119434579 119434579 C T MAATS1 Missense_Mutation p.T224M 0.32 deleterious(0.02) possibly_damaging(0.794) TCGA-CA-6715-01 3 135722058 135722058 C A PPP2R3A Missense_Mutation p.T573K 0.36 tolerated_low_confidence(0.06) benign(0.172) TCGA-CA-6715-01 3 185985498 185985498 G A DGKG Silent p.P395P 0.10 TCGA-CA-6715-01 3 38591965 38591965 G T SCN5A Silent p.S1966S 0.34 TCGA-CA-6715-01 3 43122735 43122735 G A POMGNT2 Silent p.G63G 0.35 TCGA-CA-6715-01 3 46416184 46416184 G T CCR5 3'UTR 0.43 TCGA-CA-6715-01 4 156634414 156634414 A G GUCY1A3 Silent p.E417E 0.33 TCGA-CA-6715-01 4 188924655 188924655 C A ZFP42 Missense_Mutation p.L232I 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6715-01 4 1989662 1989662 C T NELFA Missense_Mutation p.R217Q 0.27 deleterious(0.03) probably_damaging(0.913) TCGA-CA-6715-01 4 2993972 2993972 C T GRK4 Nonsense_Mutation p.R98* 0.45 TCGA-CA-6715-01 4 56847512 56847512 G A CEP135 Missense_Mutation p.M582I 0.25 tolerated(0.14) benign(0.001) TCGA-CA-6715-01 5 112155043 112155043 T A APC Splice_Site p.X438_splice 0.85 TCGA-CA-6715-01 5 140182954 140182954 C T PCDHA3 Silent p.S724S 0.42 TCGA-CA-6715-01 5 141336563 141336563 T A PCDH12 Missense_Mutation p.K285M 0.44 deleterious(0) probably_damaging(0.989) TCGA-CA-6715-01 5 143200121 143200121 T A HMHB1 Silent p.T38T 0.38 TCGA-CA-6715-01 5 149459852 149459852 C T CSF1R Missense_Mutation p.E119K 0.40 tolerated(0.13) benign(0.289) TCGA-CA-6715-01 5 176793313 176793313 T A RGS14 Missense_Mutation p.F68Y 0.55 deleterious(0.01) probably_damaging(1) TCGA-CA-6715-01 5 54277827 54277827 G A ESM1 Missense_Mutation p.T150M 0.59 tolerated(0.07) possibly_damaging(0.724) TCGA-CA-6715-01 5 71756814 71756814 C G ZNF366 Silent p.L170L 0.44 TCGA-CA-6715-01 6 10556907 10556907 C - GCNT2 Intron 0.19 TCGA-CA-6715-01 6 112454058 112454058 A G LAMA4 Missense_Mutation p.F1244S 0.12 deleterious(0) possibly_damaging(0.628) TCGA-CA-6715-01 6 133827239 133827239 T C EYA4 Intron 0.49 TCGA-CA-6715-01 6 160952811 160952811 G A LPA Missense_Mutation p.R2025C 0.38 deleterious(0) possibly_damaging(0.841) TCGA-CA-6715-01 6 161143600 161143600 G A PLG Splice_Site p.X419_splice 0.32 TCGA-CA-6715-01 6 37605156 37605156 C T MDGA1 Silent p.A952A 0.39 TCGA-CA-6715-01 6 38670781 38670781 A G GLO1 Missense_Mutation p.L17P 0.09 tolerated(0.31) benign(0.002) TCGA-CA-6715-01 6 83889625 83889625 A T PGM3 Silent p.V311V 0.42 TCGA-CA-6715-01 7 12689093 12689093 T C SCIN Missense_Mutation p.I628T 0.34 deleterious(0.01) possibly_damaging(0.729) TCGA-CA-6715-01 7 134870954 134870954 G C WDR91 Silent p.A731A 0.33 TCGA-CA-6715-01 7 152520451 152520451 G A ACTR3B Missense_Mutation p.D237N 0.36 deleterious(0.05) benign(0.124) TCGA-CA-6715-01 7 97861166 97861166 C T TECPR1 Missense_Mutation p.V642I 0.40 tolerated(0.19) benign(0.001) TCGA-CA-6715-01 8 101174562 101174562 C T SPAG1 Silent p.F18F 0.32 TCGA-CA-6715-01 8 54142312 54142312 C T OPRK1 Missense_Mutation p.V230I 0.38 tolerated(0.1) probably_damaging(0.999) TCGA-CA-6715-01 9 118950121 118950121 G A PAPPA Silent p.P368P 0.53 TCGA-CA-6715-01 9 125273430 125273430 C A OR1J2 Nonsense_Mutation p.S117* 0.41 TCGA-CA-6715-01 9 131072097 131072097 C G TRUB2 Missense_Mutation p.G243A 0.43 deleterious(0) probably_damaging(0.999) TCGA-CA-6715-01 9 135447815 135447815 G A C9orf171 Missense_Mutation p.R294H 0.50 tolerated(0.08) probably_damaging(0.977) TCGA-CA-6715-01 9 135555135 135555135 G A GTF3C4 Missense_Mutation p.R710H 0.57 tolerated_low_confidence(0.13) possibly_damaging(0.719) TCGA-CA-6715-01 9 136389832 136389832 C T TMEM8C Silent p.A45A 0.47 TCGA-CA-6715-01 9 95997108 95997108 C T WNK2 Missense_Mutation p.A365V 0.32 unknown(0) TCGA-CA-6715-01 X 105452149 105452149 T C MUM1L1 3'UTR 0.51 TCGA-CA-6715-01 X 12937472 12937472 G A TLR8 Missense_Mutation p.G105R 0.94 tolerated(0.21) benign(0.001) TCGA-CA-6715-01 X 150869437 150869437 G A PRRG3 Missense_Mutation p.V210M 0.95 tolerated(0.08) benign(0.012) TCGA-CA-6715-01 X 38019432 38019432 G T SRPX Missense_Mutation p.L265I 0.94 deleterious(0.01) benign(0.347) TCGA-CA-6716-01 10 102052798 102052798 C T PKD2L1 Missense_Mutation p.R596H 0.28 tolerated(0.22) benign(0.004) TCGA-CA-6716-01 10 102739897 102739897 C T SEMA4G Missense_Mutation p.R383C 0.62 deleterious(0) probably_damaging(0.999) TCGA-CA-6716-01 10 103917282 103917282 T G NOLC1 Missense_Mutation p.D137E 0.27 tolerated_low_confidence(1) benign(0) TCGA-CA-6716-01 10 45958633 45958634 - G MARCH8 Intron 0.30 TCGA-CA-6716-01 11 112014429 112014429 C A IL18 Nonsense_Mutation p.G158* 0.68 TCGA-CA-6716-01 11 4869964 4869964 G A OR51S1 Nonsense_Mutation p.R159* 0.27 TCGA-CA-6716-01 11 66333855 66333855 C T CTSF Missense_Mutation p.V210I 0.49 tolerated(1) benign(0.062) TCGA-CA-6716-01 11 6891123 6891123 G T OR10A2 Missense_Mutation p.M46I 0.23 deleterious(0) benign(0.371) TCGA-CA-6716-01 11 69972185 69972185 G A ANO1 Silent p.K327K 0.51 TCGA-CA-6716-01 11 76371564 76371564 C T LRRC32 Missense_Mutation p.R358H 0.33 tolerated(0.7) benign(0.001) TCGA-CA-6716-01 11 821962 821962 A G PNPLA2 Missense_Mutation p.N142S 0.22 tolerated(0.42) benign(0.348) TCGA-CA-6716-01 11 82976918 82976918 C T CCDC90B Missense_Mutation p.R233H 0.22 deleterious(0.01) benign(0.262) TCGA-CA-6716-01 11 92257941 92257941 C T FAT3 Missense_Mutation p.A1145V 0.54 probably_damaging(0.947) TCGA-CA-6716-01 12 104126918 104126918 G A STAB2 Silent p.K1806K 0.33 TCGA-CA-6716-01 12 104376688 104376688 C T TDG Missense_Mutation p.T197M 0.07 deleterious(0) probably_damaging(0.982) TCGA-CA-6716-01 12 118467631 118467631 G A RFC5 Splice_Site p.X309_splice 0.15 TCGA-CA-6716-01 12 124270305 124270305 G A DNAH10 Missense_Mutation p.G354R 0.44 probably_damaging(0.999) TCGA-CA-6716-01 12 18854629 18854629 G A PLCZ1 Missense_Mutation p.R316C 0.37 deleterious(0.05) benign(0.339) TCGA-CA-6716-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.45 deleterious(0.04) possibly_damaging(0.506) TCGA-CA-6716-01 12 41337803 41337803 C T CNTN1 Missense_Mutation p.T505M 0.51 deleterious(0) probably_damaging(0.998) TCGA-CA-6716-01 12 48579360 48579360 A G C12orf68 3'UTR 0.58 TCGA-CA-6716-01 12 57883318 57883318 C T MARS Nonsense_Mutation p.Q131* 0.60 TCGA-CA-6716-01 12 80749543 80749543 G A OTOGL Missense_Mutation p.R1865H 0.42 tolerated(0.31) benign(0.011) TCGA-CA-6716-01 13 21875608 21875608 A G LINC00422 3'Flank 0.42 TCGA-CA-6716-01 13 27333369 27333369 G A GPR12 Missense_Mutation p.A199V 0.19 tolerated(0.56) benign(0.002) TCGA-CA-6716-01 13 78470569 78470569 T A EDNRB 3'UTR 0.14 TCGA-CA-6716-01 13 97485325 97485325 A G HS6ST3 Missense_Mutation p.D430G 0.68 tolerated(0.23) benign(0.088) TCGA-CA-6716-01 14 102028080 102028080 G T DIO3 Nonsense_Mutation p.E83* 0.31 TCGA-CA-6716-01 14 106207847 106207847 T A IGHG1 Missense_Mutation p.Y319F 0.56 tolerated(0.86) benign(0.002) TCGA-CA-6716-01 14 33684566 33684566 G A NPAS3 Missense_Mutation p.A107T 0.15 tolerated(0.17) possibly_damaging(0.483) TCGA-CA-6716-01 14 34266720 34266720 G T NPAS3 Missense_Mutation p.E453D 0.28 tolerated(0.06) possibly_damaging(0.899) TCGA-CA-6716-01 14 44975550 44975550 C A FSCB Missense_Mutation p.S214I 0.14 deleterious(0) possibly_damaging(0.875) TCGA-CA-6716-01 14 47530540 47530540 C T MDGA2 Silent p.T479T 0.60 TCGA-CA-6716-01 14 51233550 51233550 T G NIN Missense_Mutation p.E498A 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6716-01 14 60611532 60611532 T - DHRS7 3'UTR 0.61 TCGA-CA-6716-01 14 62207234 62207234 C A HIF1A Silent p.P540P 0.21 TCGA-CA-6716-01 14 94173122 94173122 C T UNC79 Silent p.L2417L 0.42 TCGA-CA-6716-01 15 31819495 31819495 G A OTUD7A Silent p.H223H 0.44 TCGA-CA-6716-01 15 41165367 41165367 C T RHOV Silent p.S200S 0.59 TCGA-CA-6716-01 15 42136770 42136770 C T PLA2G4B Silent p.C558C 0.19 TCGA-CA-6716-01 15 52877050 52877050 C T FAM214A Missense_Mutation p.R990Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-CA-6716-01 15 54307661 54307661 C T UNC13C Missense_Mutation p.T854M 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.488) TCGA-CA-6716-01 15 63908838 63908838 G C HERC1 Missense_Mutation p.Q4578E 0.35 probably_damaging(0.991) TCGA-CA-6716-01 15 65223054 65223054 G A ANKDD1A Missense_Mutation p.R202Q 0.50 tolerated(0.43) benign(0.037) TCGA-CA-6716-01 15 75108621 75108621 C T LMAN1L Missense_Mutation p.T100M 0.15 deleterious(0) probably_damaging(0.988) TCGA-CA-6716-01 15 75980079 75980079 G A CSPG4 Silent p.D1109D 0.21 TCGA-CA-6716-01 15 79589562 79589562 C T ANKRD34C 3'UTR 0.31 TCGA-CA-6716-01 15 90195938 90195938 A T KIF7 Missense_Mutation p.V75D 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6716-01 16 1559927 1559927 C T TELO2 Missense_Mutation p.A835V 0.21 tolerated_low_confidence(0.21) benign(0.042) TCGA-CA-6716-01 16 20357507 20357507 G A UMOD Missense_Mutation p.R375W 0.74 deleterious(0) probably_damaging(0.956) TCGA-CA-6716-01 16 20975002 20975002 C T DNAH3 Missense_Mutation p.A3402T 0.65 deleterious(0.02) benign(0.052) TCGA-CA-6716-01 16 3100312 3100312 G T MMP25 Missense_Mutation p.M142I 0.22 tolerated(0.07) benign(0.047) TCGA-CA-6716-01 16 33020757 33020757 G C IGHV3OR16-8 Missense_Mutation p.W55C 0.74 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-CA-6716-01 16 56920297 56920297 G A SLC12A3 Silent p.T649T 0.61 TCGA-CA-6716-01 16 67331472 67331472 C T KCTD19 Missense_Mutation p.E361K 0.70 deleterious(0.02) benign(0.187) TCGA-CA-6716-01 16 68373383 68373383 C T PRMT7 Silent p.G221G 0.69 TCGA-CA-6716-01 16 732019 732019 G T STUB1 Splice_Site p.X205_splice 0.21 TCGA-CA-6716-01 16 84872081 84872081 A T CRISPLD2 5'UTR 0.24 TCGA-CA-6716-01 17 10432937 10432937 C T MYH2 Missense_Mutation p.D1021N 0.24 deleterious(0.01) probably_damaging(1) TCGA-CA-6716-01 17 17119704 17119704 C T FLCN Silent p.V430V 0.28 TCGA-CA-6716-01 17 17209934 17209934 C T NT5M Silent p.V115V 0.36 TCGA-CA-6716-01 17 17425685 17425685 G A PEMT Missense_Mutation p.R77C 0.23 deleterious(0) probably_damaging(0.944) TCGA-CA-6716-01 17 3181989 3181989 C T OR3A2 Missense_Mutation p.G81R 0.17 tolerated(0.05) possibly_damaging(0.557) TCGA-CA-6716-01 17 59821818 59821818 G A BRIP1 Silent p.D744D 0.21 TCGA-CA-6716-01 17 74003525 74003525 C T EVPL Missense_Mutation p.V1921I 0.22 tolerated(0.3) benign(0.013) TCGA-CA-6716-01 18 3457782 3457783 - TC TGIF1 Frame_Shift_Ins p.G352Lfs*32 0.80 TCGA-CA-6716-01 18 44104845 44104845 G A LOXHD1 Silent p.G411G 0.43 TCGA-CA-6716-01 18 44236907 44236907 G A LOXHD1 Silent p.D30D 0.35 TCGA-CA-6716-01 18 64218458 64218458 C A CDH19 Silent p.L216L 0.29 TCGA-CA-6716-01 19 11979244 11979244 C T ZNF439 Nonsense_Mutation p.R454* 0.37 TCGA-CA-6716-01 19 31767933 31767933 G A TSHZ3 Silent p.Y922Y 0.15 TCGA-CA-6716-01 19 35633349 35633349 G A FXYD1 Intron 0.29 TCGA-CA-6716-01 19 35849940 35849940 G A FFAR3 Missense_Mutation p.V50M 0.25 tolerated(0.13) possibly_damaging(0.532) TCGA-CA-6716-01 19 40902966 40902966 C A PRX Silent p.G431G 0.43 TCGA-CA-6716-01 19 45790780 45790780 G A MARK4 Missense_Mutation p.R451Q 0.40 tolerated(0.16) benign(0.001) TCGA-CA-6716-01 19 48284435 48284435 A G SEPW1 Missense_Mutation p.K60R 0.09 deleterious(0) probably_damaging(0.996) TCGA-CA-6716-01 19 50017689 50017689 C T FCGRT Missense_Mutation p.P183S 0.39 deleterious(0.04) probably_damaging(0.992) TCGA-CA-6716-01 19 51274812 51274812 G A GPR32 Missense_Mutation p.V319I 0.38 tolerated(1) benign(0.002) TCGA-CA-6716-01 19 54080887 54080887 C A ZNF331 Missense_Mutation p.T358K 0.46 tolerated(1) benign(0.305) TCGA-CA-6716-01 19 55494535 55494535 G A NLRP2 Missense_Mutation p.R490H 0.46 deleterious(0.05) possibly_damaging(0.773) TCGA-CA-6716-01 19 56703265 56703265 C T ZSCAN5B Missense_Mutation p.R181Q 0.22 tolerated(0.73) benign(0.015) TCGA-CA-6716-01 19 57328286 57328286 C T PEG3 Silent p.K508K 0.16 TCGA-CA-6716-01 19 58132389 58132389 C A ZNF134 Missense_Mutation p.S301Y 0.13 deleterious(0) probably_damaging(0.921) TCGA-CA-6716-01 19 6913693 6913693 T G EMR1 Silent p.L384L 0.25 TCGA-CA-6716-01 19 815804 815804 C A LPPR3 Silent p.L41L 0.35 TCGA-CA-6716-01 19 8434184 8434184 C T ANGPTL4 Missense_Mutation p.P210L 0.38 tolerated(0.17) benign(0.036) TCGA-CA-6716-01 19 9018555 9018555 C A MUC16 Missense_Mutation p.G12540V 0.21 possibly_damaging(0.609) TCGA-CA-6716-01 19 9061043 9061043 G A MUC16 Silent p.T8801T 0.43 TCGA-CA-6716-01 19 9868208 9868208 G A ZNF846 Silent p.F515F 0.44 TCGA-CA-6716-01 19 9949160 9949160 G C PIN1 Missense_Mutation p.R36P 0.38 tolerated(1) benign(0.048) TCGA-CA-6716-01 1 101004669 101004669 C T GPR88 Silent p.N49N 0.35 TCGA-CA-6716-01 1 109944596 109944596 C T PSMA5 3'UTR 0.19 TCGA-CA-6716-01 1 113058940 113058940 C T WNT2B Silent p.Y194Y 0.58 TCGA-CA-6716-01 1 13942467 13942467 T C PDPN 3'UTR 0.22 TCGA-CA-6716-01 1 150316863 150316863 A G PRPF3 Intron 0.66 TCGA-CA-6716-01 1 152285000 152285000 G A FLG Nonsense_Mutation p.R788* 0.50 TCGA-CA-6716-01 1 156594163 156594163 C G HAPLN2 Missense_Mutation p.P154A 0.12 deleterious(0.02) benign(0.065) TCGA-CA-6716-01 1 174418471 174418471 C T GPR52 3'UTR 0.17 TCGA-CA-6716-01 1 181689466 181689466 G T CACNA1E Nonsense_Mutation p.G626* 0.44 TCGA-CA-6716-01 1 186332062 186332062 C T TPR Silent p.L201L 0.48 TCGA-CA-6716-01 1 197072765 197072766 - A ASPM Frame_Shift_Ins p.L1872Ffs*24 0.33 TCGA-CA-6716-01 1 210407341 210407341 A T SERTAD4 Intron 0.23 TCGA-CA-6716-01 1 220327341 220327341 A G RAB3GAP2 Missense_Mutation p.M1205T 0.14 tolerated(0.08) benign(0.096) TCGA-CA-6716-01 1 221055560 221055560 G A HLX Missense_Mutation p.R276H 0.55 deleterious(0) probably_damaging(0.999) TCGA-CA-6716-01 1 222696970 222696970 C T HHIPL2 Silent p.P624P 0.36 TCGA-CA-6716-01 1 226784515 226784515 C T C1orf95 Missense_Mutation p.S72L 0.31 deleterious(0) possibly_damaging(0.559) TCGA-CA-6716-01 1 228437915 228437915 G A OBSCN Missense_Mutation p.R1520Q 0.30 possibly_damaging(0.468) TCGA-CA-6716-01 1 231339621 231339621 G A TRIM67 Missense_Mutation p.V515I 0.30 tolerated(0.06) benign(0.094) TCGA-CA-6716-01 1 235416091 235416091 C T ARID4B Missense_Mutation p.R103Q 0.54 deleterious(0) probably_damaging(0.99) TCGA-CA-6716-01 1 240371243 240371243 C T FMN2 Missense_Mutation p.P1044L 0.41 unknown(0) TCGA-CA-6716-01 1 247587260 247587260 G A NLRP3 Missense_Mutation p.R172H 0.66 tolerated(0.12) benign(0.433) TCGA-CA-6716-01 1 26737993 26737993 C T LIN28A Missense_Mutation p.R50C 0.21 tolerated(0.1) benign(0.045) TCGA-CA-6716-01 1 36230088 36230088 G A CLSPN Nonsense_Mutation p.Q121* 0.33 TCGA-CA-6716-01 1 36297784 36297784 C T AGO4 Missense_Mutation p.R415W 0.16 deleterious(0) possibly_damaging(0.886) TCGA-CA-6716-01 1 3669271 3669271 C T CCDC27 Missense_Mutation p.R76W 0.36 deleterious(0) probably_damaging(0.942) TCGA-CA-6716-01 1 37959664 37959664 C T MEAF6 3'UTR 0.27 TCGA-CA-6716-01 20 33342660 33342660 G A NCOA6 Missense_Mutation p.R514C 0.14 probably_damaging(0.997) TCGA-CA-6716-01 20 43133453 43133453 G T SERINC3 Missense_Mutation p.S288Y 0.28 deleterious(0) probably_damaging(0.918) TCGA-CA-6716-01 20 47691356 47691356 G C CSE1L Missense_Mutation p.E367D 0.14 tolerated(0.19) possibly_damaging(0.572) TCGA-CA-6716-01 20 47691357 47691357 G T CSE1L Nonsense_Mutation p.E368* 0.15 TCGA-CA-6716-01 20 55209291 55209291 G A TFAP2C Missense_Mutation p.A297T 0.37 deleterious(0.04) benign(0.051) TCGA-CA-6716-01 20 60348199 60348199 C T CDH4 Silent p.P179P 0.39 TCGA-CA-6716-01 21 27852734 27852734 G A CYYR1 Missense_Mutation p.A64V 0.56 deleterious(0.01) probably_damaging(0.989) TCGA-CA-6716-01 21 31768662 31768662 C A KRTAP13-1 Silent p.S86S 0.40 TCGA-CA-6716-01 21 38853089 38853089 C T DYRK1A Silent p.Y159Y 0.50 TCGA-CA-6716-01 21 45161399 45161399 G A PDXK Intron 0.63 TCGA-CA-6716-01 21 46888264 46888264 C A COL18A1 Missense_Mutation p.P252Q 0.36 unknown(0) TCGA-CA-6716-01 22 22842526 22842526 C T ZNF280B Missense_Mutation p.E400K 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-CA-6716-01 22 37771002 37771002 G A ELFN2 Silent p.C191C 0.29 TCGA-CA-6716-01 22 40681739 40681739 C T TNRC6B Missense_Mutation p.R1225W 0.52 deleterious(0) probably_damaging(0.976) TCGA-CA-6716-01 2 120097480 120097480 C T C2orf76 Missense_Mutation p.R19H 0.19 tolerated(0.06) possibly_damaging(0.711) TCGA-CA-6716-01 2 122522731 122522731 G A TSN Missense_Mutation p.V159M 0.67 deleterious(0) probably_damaging(0.997) TCGA-CA-6716-01 2 124783243 124783243 C T CNTNAP5 Missense_Mutation p.R6W 0.21 tolerated_low_confidence(0.14) benign(0.003) TCGA-CA-6716-01 2 139318395 139318395 T G SPOPL Missense_Mutation p.D245E 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6716-01 2 152490449 152490449 G A NEB Missense_Mutation p.L3045F 0.65 possibly_damaging(0.798) TCGA-CA-6716-01 2 21229680 21229680 C A APOB Missense_Mutation p.A3354S 0.09 benign(0.304) TCGA-CA-6716-01 2 228881942 228881942 C A SPHKAP Missense_Mutation p.A1210S 0.61 tolerated(0.91) benign(0.002) TCGA-CA-6716-01 2 233394675 233394675 C T CHRND Missense_Mutation p.R216W 0.79 deleterious(0) probably_damaging(0.996) TCGA-CA-6716-01 2 26684723 26684723 G A OTOF Missense_Mutation p.R1792C 0.15 deleterious(0) possibly_damaging(0.902) TCGA-CA-6716-01 2 71190295 71190295 T C ATP6V1B1 Missense_Mutation p.S305P 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6716-01 2 73519365 73519365 G A EGR4 Silent p.A330A 0.11 TCGA-CA-6716-01 2 97364831 97364831 G A FER1L5 RNA 0.72 TCGA-CA-6716-01 3 100364934 100364934 C T GPR128 Silent p.D364D 0.61 TCGA-CA-6716-01 3 142681758 142681758 C T PAQR9 Missense_Mutation p.V141M 0.60 deleterious(0.02) possibly_damaging(0.462) TCGA-CA-6716-01 3 142840375 142840375 C T CHST2 Silent p.S239S 0.45 TCGA-CA-6716-01 3 147108846 147108846 C T ZIC4 Silent p.P342P 0.53 TCGA-CA-6716-01 3 196202128 196202128 C G RNF168 Missense_Mutation p.E246Q 0.30 tolerated(0.07) possibly_damaging(0.649) TCGA-CA-6716-01 3 38648293 38648293 G A SCN5A Missense_Mutation p.P336L 0.31 deleterious(0.01) probably_damaging(1) TCGA-CA-6716-01 3 39227779 39227779 G A XIRP1 Missense_Mutation p.A1053V 0.34 tolerated(0.13) benign(0.003) TCGA-CA-6716-01 3 44763241 44763241 C T ZNF502 Missense_Mutation p.T311M 0.29 tolerated(0.11) benign(0.066) TCGA-CA-6716-01 3 97356813 97356813 C A EPHA6 Silent p.R891R 0.49 TCGA-CA-6716-01 4 110581398 110581398 T C CCDC109B Silent p.L75L 0.61 TCGA-CA-6716-01 4 122301634 122301634 C T QRFPR Missense_Mutation p.A57T 0.64 tolerated(0.36) benign(0.001) TCGA-CA-6716-01 4 169336569 169336569 G T DDX60L Missense_Mutation p.T990K 0.23 deleterious(0) probably_damaging(0.974) TCGA-CA-6716-01 4 183714912 183714912 C T TENM3 Missense_Mutation p.R2363W 0.66 deleterious(0) possibly_damaging(0.876) TCGA-CA-6716-01 4 55139838 55139838 G A PDGFRA Missense_Mutation p.R500Q 0.39 tolerated(0.05) probably_damaging(0.975) TCGA-CA-6716-01 4 77677696 77677697 - A SHROOM3 Frame_Shift_Ins p.T1603Nfs*9 0.42 TCGA-CA-6716-01 5 112137048 112137048 G T APC Nonsense_Mutation p.E268* 0.83 TCGA-CA-6716-01 5 126746243 126746243 C T MEGF10 Silent p.Y360Y 0.25 TCGA-CA-6716-01 5 140175831 140175831 C T PCDHA2 Missense_Mutation p.R428W 0.22 deleterious_low_confidence(0.04) benign(0.063) TCGA-CA-6716-01 5 140237165 140237165 C T PCDHA10 Missense_Mutation p.A511V 0.70 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-CA-6716-01 5 140249912 140249912 G T PCDHA11 Silent p.L408L 0.22 TCGA-CA-6716-01 5 140347071 140347071 G A PCDHAC2 Silent p.T240T 0.69 TCGA-CA-6716-01 5 140558281 140558281 C A PCDHB8 Silent p.P222P 0.06 TCGA-CA-6716-01 5 140773320 140773320 T C PCDHGA8 Missense_Mutation p.F314L 0.29 tolerated_low_confidence(0.12) benign(0.039) TCGA-CA-6716-01 5 145547804 145547804 C T LARS Missense_Mutation p.E107K 0.33 deleterious(0) benign(0.41) TCGA-CA-6716-01 5 149386150 149386150 C T HMGXB3 Silent p.S84S 0.57 TCGA-CA-6716-01 5 173416453 173416453 G A C5orf47 Missense_Mutation p.V63I 0.21 tolerated(0.19) possibly_damaging(0.636) TCGA-CA-6716-01 5 176069727 176069727 T G EIF4E1B 5'UTR 0.20 TCGA-CA-6716-01 5 36985777 36985777 G T NIPBL Missense_Mutation p.R832L 0.56 deleterious_low_confidence(0.01) benign(0.012) TCGA-CA-6716-01 5 37125382 37125382 C A C5orf42 Silent p.G2920G 0.66 TCGA-CA-6716-01 5 41159229 41159230 - C C6 Frame_Shift_Ins p.E604Gfs*23 0.40 TCGA-CA-6716-01 5 63257311 63257311 G A HTR1A Missense_Mutation p.A79V 0.75 deleterious(0) probably_damaging(1) TCGA-CA-6716-01 6 119390286 119390286 C T FAM184A Intron 0.24 TCGA-CA-6716-01 6 144768766 144768766 G A UTRN Missense_Mutation p.R584H 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6716-01 6 152419948 152419948 C T ESR1 Silent p.D545D 0.07 TCGA-CA-6716-01 6 152473244 152473244 C T SYNE1 Silent p.T8054T 0.45 TCGA-CA-6716-01 6 152668367 152668367 T C SYNE1 Missense_Mutation p.M3969V 0.54 benign(0.001) TCGA-CA-6716-01 6 161519333 161519333 C T MAP3K4 Missense_Mutation p.A1183V 0.36 tolerated(0.33) benign(0.001) TCGA-CA-6716-01 6 29364694 29364694 C T OR12D2 Missense_Mutation p.T73M 0.47 deleterious(0) benign(0.38) TCGA-CA-6716-01 6 29407980 29407980 G A OR10C1 Missense_Mutation p.R63H 0.40 tolerated(0.13) possibly_damaging(0.549) TCGA-CA-6716-01 6 30138323 30138323 C T TRIM15 Silent p.D259D 0.20 TCGA-CA-6716-01 6 32008499 32008499 C T CYP21A2 Silent p.G391G 0.19 TCGA-CA-6716-01 6 74524801 74524801 A G CD109 Missense_Mutation p.E1289G 0.47 deleterious(0) benign(0.001) TCGA-CA-6716-01 6 84883877 84883878 - T KIAA1009 Frame_Shift_Ins p.Q686Tfs*11 0.26 TCGA-CA-6716-01 6 97001346 97001346 C G UFL1 Silent p.L784L 0.39 TCGA-CA-6716-01 6 98472412 98472412 A T MIR2113 RNA 0.50 TCGA-CA-6716-01 7 129098277 129098277 G A STRIP2 Nonsense_Mutation p.W420* 0.19 TCGA-CA-6716-01 7 129104501 129104501 C G STRIP2 Missense_Mutation p.H566Q 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6716-01 7 136701655 136701655 C A CHRM2 3'UTR 0.62 TCGA-CA-6716-01 7 149530914 149530914 G A ZNF862 5'Flank 0.68 TCGA-CA-6716-01 7 42012166 42012166 G A GLI3 Missense_Mutation p.R625W 0.55 deleterious(0.01) probably_damaging(1) TCGA-CA-6716-01 7 43590176 43590176 C T HECW1 Missense_Mutation p.R1461C 0.26 deleterious(0) probably_damaging(0.998) TCGA-CA-6716-01 7 43917320 43917320 C T URGCP Missense_Mutation p.R581Q 0.56 tolerated(0.43) possibly_damaging(0.468) TCGA-CA-6716-01 7 48390274 48390274 C T ABCA13 Silent p.G3413G 0.64 TCGA-CA-6716-01 7 95125290 95125290 C T ASB4 Silent p.Y136Y 0.23 TCGA-CA-6716-01 8 100887780 100887781 - C VPS13B Frame_Shift_Ins p.S3988Lfs*4 0.36 TCGA-CA-6716-01 8 13425072 13425072 C A C8orf48 Missense_Mutation p.A191D 0.27 deleterious(0.04) benign(0.043) TCGA-CA-6716-01 8 40532420 40532420 C T ZMAT4 Missense_Mutation p.R127Q 0.50 tolerated(0.57) benign(0.034) TCGA-CA-6716-01 8 42176835 42176835 C T IKBKB Missense_Mutation p.S471F 0.44 tolerated(0.06) benign(0.002) TCGA-CA-6716-01 8 53044672 53044672 A G ST18 Missense_Mutation p.S838P 0.40 deleterious(0.02) probably_damaging(0.982) TCGA-CA-6716-01 8 68965472 68965472 C T PREX2 Missense_Mutation p.R362W 0.40 deleterious(0) probably_damaging(0.995) TCGA-CA-6716-01 8 77763468 77763468 C T ZFHX4 Silent p.F1437F 0.45 TCGA-CA-6716-01 8 95448919 95448919 G C FSBP Missense_Mutation p.R60G 0.41 deleterious(0) probably_damaging(0.993) TCGA-CA-6716-01 9 104170809 104170809 T G ZNF189 Missense_Mutation p.I253M 0.34 deleterious(0.02) possibly_damaging(0.879) TCGA-CA-6716-01 9 119144733 119144733 C T PAPPA Silent p.D1579D 0.63 TCGA-CA-6716-01 9 126132949 126132949 C T CRB2 Silent p.G539G 0.09 TCGA-CA-6716-01 9 33675952 33675952 C T PTENP1 RNA 0.29 TCGA-CA-6716-01 9 35707802 35707802 T C TLN1 Missense_Mutation p.T1520A 0.24 tolerated(0.14) benign(0) TCGA-CA-6716-01 9 84607218 84607218 C T SPATA31D1 Silent p.N611N 0.57 TCGA-CA-6716-01 9 90264980 90264980 G A DAPK1 Missense_Mutation p.D525N 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6716-01 9 91617087 91617087 C T S1PR3 Silent p.R324R 0.38 TCGA-CA-6716-01 X 125955092 125955092 C T CXorf64 Silent p.N157N 0.82 TCGA-CA-6716-01 X 49646964 49646964 A G USP27X 3'UTR 0.61 TCGA-CA-6716-01 X 76763772 76763772 A - ATRX 3'UTR 0.11 TCGA-CA-6716-01 X 82763725 82763725 C A POU3F4 Silent p.L131L 0.96 TCGA-CA-6717-01 10 100150787 100150787 G A PYROXD2 Missense_Mutation p.S372L 0.33 deleterious(0.02) benign(0.134) TCGA-CA-6717-01 10 100152747 100152747 C T PYROXD2 Silent p.A293A 0.17 TCGA-CA-6717-01 10 101591511 101591511 C A ABCC2 Silent p.I1009I 0.23 TCGA-CA-6717-01 10 101639727 101639727 C T DNMBP Silent p.P1463P 0.10 TCGA-CA-6717-01 10 101654743 101654743 G T DNMBP Missense_Mutation p.S1039Y 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 10 101654779 101654779 T C DNMBP Missense_Mutation p.E1027G 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 101911983 101911983 C T ERLIN1 Missense_Mutation p.D318N 0.19 tolerated_low_confidence(0.27) benign(0.001) TCGA-CA-6717-01 10 101923816 101923816 C A ERLIN1 Missense_Mutation p.Q200H 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-CA-6717-01 10 102035174 102035174 T G BLOC1S2 3'UTR 0.10 TCGA-CA-6717-01 10 102049796 102049796 C T PKD2L1 Silent p.G742G 0.10 TCGA-CA-6717-01 10 102052785 102052785 C T PKD2L1 Silent p.E600E 0.18 TCGA-CA-6717-01 10 102239763 102239763 C T WNT8B Missense_Mutation p.R79C 0.27 deleterious(0) probably_damaging(0.953) TCGA-CA-6717-01 10 102242169 102242169 G A WNT8B Missense_Mutation p.V218M 0.32 deleterious(0.04) possibly_damaging(0.612) TCGA-CA-6717-01 10 102258543 102258543 T G SEC31B Missense_Mutation p.K535Q 0.15 tolerated(0.2) benign(0.013) TCGA-CA-6717-01 10 102283664 102283664 T G NDUFB8 Missense_Mutation p.N164T 0.23 deleterious(0.03) possibly_damaging(0.734) TCGA-CA-6717-01 10 102678173 102678173 T C FAM178A Silent p.S316S 0.14 TCGA-CA-6717-01 10 102698383 102698383 G A FAM178A Nonsense_Mutation p.W848* 0.09 TCGA-CA-6717-01 10 103285923 103285923 C T BTRC Missense_Mutation p.S237F 0.24 tolerated(0.07) possibly_damaging(0.56) TCGA-CA-6717-01 10 103295137 103295137 T G BTRC Missense_Mutation p.F458L 0.16 tolerated(0.12) benign(0.11) TCGA-CA-6717-01 10 103530240 103530240 G A FGF8 Missense_Mutation p.T194M 0.15 deleterious(0.01) possibly_damaging(0.871) TCGA-CA-6717-01 10 103558652 103558652 G A MGEA5 Nonsense_Mutation p.R586* 0.28 TCGA-CA-6717-01 10 103870687 103870687 G T LDB1 Missense_Mutation p.F97L 0.19 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 10 103990757 103990757 C A PITX3 Silent p.V141V 0.19 TCGA-CA-6717-01 10 104156059 104156059 T C NFKB2 Missense_Mutation p.I24T 0.11 tolerated(0.24) benign(0.001) TCGA-CA-6717-01 10 104173762 104173762 G T PSD Missense_Mutation p.F439L 0.11 tolerated(0.06) benign(0.143) TCGA-CA-6717-01 10 104595074 104595074 G A CYP17A1 Nonsense_Mutation p.R125* 0.24 TCGA-CA-6717-01 10 104851364 104851364 C T NT5C2 Missense_Mutation p.E390K 0.10 tolerated(0.08) benign(0.141) TCGA-CA-6717-01 10 104853796 104853796 C T NT5C2 Splice_Site p.X308_splice 0.08 TCGA-CA-6717-01 10 104861054 104861054 T G NT5C2 Missense_Mutation p.K140T 0.11 deleterious(0) benign(0.126) TCGA-CA-6717-01 10 105006024 105006024 T C RPEL1 Missense_Mutation p.Y91H 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 105007628 105007628 T G RPEL1 3'UTR 0.21 TCGA-CA-6717-01 10 105063527 105063527 T G PCGF6 3'UTR 0.27 TCGA-CA-6717-01 10 105138217 105138217 C A TAF5 Silent p.I341I 0.19 TCGA-CA-6717-01 10 105139437 105139437 G T TAF5 Nonsense_Mutation p.E396* 0.09 TCGA-CA-6717-01 10 105139509 105139509 A G TAF5 Missense_Mutation p.N420D 0.23 tolerated(0.16) possibly_damaging(0.459) TCGA-CA-6717-01 10 105176327 105176327 T G PDCD11 Missense_Mutation p.I533S 0.15 deleterious(0.05) benign(0.421) TCGA-CA-6717-01 10 105193789 105193789 T G PDCD11 Missense_Mutation p.F1187V 0.30 tolerated(0.7) benign(0.101) TCGA-CA-6717-01 10 105200291 105200291 G A PDCD11 Missense_Mutation p.A1465T 0.09 tolerated(0.33) benign(0.003) TCGA-CA-6717-01 10 105215363 105215363 C T CALHM1 Missense_Mutation p.E233K 0.23 deleterious(0.04) possibly_damaging(0.734) TCGA-CA-6717-01 10 105236247 105236247 A G CALHM3 Missense_Mutation p.L116P 0.13 deleterious(0) possibly_damaging(0.898) TCGA-CA-6717-01 10 105363470 105363470 A G SH3PXD2A Missense_Mutation p.I474T 0.15 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 10 105372744 105372744 T G SH3PXD2A Missense_Mutation p.K347T 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-CA-6717-01 10 105762041 105762041 C T SLK Missense_Mutation p.R369C 0.19 deleterious(0.03) benign(0.002) TCGA-CA-6717-01 10 105762523 105762523 G T SLK Missense_Mutation p.E529D 0.12 tolerated(0.19) benign(0.005) TCGA-CA-6717-01 10 105763159 105763159 G A SLK Silent p.E741E 0.17 TCGA-CA-6717-01 10 105797437 105797437 G A COL17A1 Silent p.F1055F 0.13 TCGA-CA-6717-01 10 105907717 105907717 A G WDR96 Silent p.L1234L 0.08 TCGA-CA-6717-01 10 105923849 105923849 T C WDR96 Intron 0.23 TCGA-CA-6717-01 10 105939624 105939624 G A WDR96 Missense_Mutation p.P786S 0.16 tolerated(0.6) benign(0.004) TCGA-CA-6717-01 10 106152017 106152017 A C CCDC147 Missense_Mutation p.K464N 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-CA-6717-01 10 106982964 106982964 T G SORCS3 Missense_Mutation p.L942R 0.14 deleterious(0.05) benign(0.025) TCGA-CA-6717-01 10 108337154 108337154 G A SORCS1 Intron 0.16 TCGA-CA-6717-01 10 1089812 1089812 G A IDI1 Intron 0.45 TCGA-CA-6717-01 10 111872675 111872675 T C ADD3 Splice_Site p.X112_splice 0.10 TCGA-CA-6717-01 10 112344102 112344102 A C SMC3 Missense_Mutation p.K418T 0.09 tolerated(0.38) benign(0.115) TCGA-CA-6717-01 10 112344107 112344107 T G SMC3 Missense_Mutation p.L420V 0.22 tolerated(0.12) benign(0.241) TCGA-CA-6717-01 10 112349463 112349463 G T SMC3 Missense_Mutation p.R469I 0.19 deleterious(0) possibly_damaging(0.854) TCGA-CA-6717-01 10 112364142 112364142 A C SMC3 3'UTR 0.32 TCGA-CA-6717-01 10 112572373 112572373 T G RBM20 Missense_Mutation p.S740A 0.17 tolerated(0.52) benign(0.004) TCGA-CA-6717-01 10 112724138 112724138 G T SHOC2 Nonsense_Mutation p.E8* 0.20 TCGA-CA-6717-01 10 112840130 112840130 C T ADRA2A 3'UTR 0.13 TCGA-CA-6717-01 10 112840532 112840532 T G ADRA2A 3'UTR 0.13 TCGA-CA-6717-01 10 1142209 1142209 G A WDR37 Intron 0.12 TCGA-CA-6717-01 10 11505742 11505742 C T USP6NL Silent p.P412P 0.27 TCGA-CA-6717-01 10 115312792 115312792 C T HABP2 5'UTR 0.31 TCGA-CA-6717-01 10 115343047 115343047 C T HABP2 Silent p.S389S 0.09 TCGA-CA-6717-01 10 115348670 115348670 C T NRAP 3'UTR 0.08 TCGA-CA-6717-01 10 115355423 115355423 C T NRAP Missense_Mutation p.D1499N 0.11 deleterious(0) possibly_damaging(0.904) TCGA-CA-6717-01 10 115365979 115365979 G A NRAP Silent p.P1255P 0.24 TCGA-CA-6717-01 10 115374032 115374032 C A NRAP Missense_Mutation p.E1070D 0.24 deleterious(0) possibly_damaging(0.859) TCGA-CA-6717-01 10 115391352 115391352 T C NRAP Silent p.E586E 0.28 TCGA-CA-6717-01 10 115536914 115536914 G T PLEKHS1 Nonsense_Mutation p.G355* 0.14 TCGA-CA-6717-01 10 115609399 115609399 A G DCLRE1A Silent p.L489L 0.10 TCGA-CA-6717-01 10 115806191 115806191 G T ADRB1 3'UTR 0.17 TCGA-CA-6717-01 10 116060312 116060312 C T AFAP1L2 Silent p.P560P 0.10 TCGA-CA-6717-01 10 116093041 116093041 C G AFAP1L2 Missense_Mutation p.E53D 0.18 deleterious(0.04) probably_damaging(0.979) TCGA-CA-6717-01 10 116593029 116593029 G A FAM160B1 Silent p.S54S 0.25 TCGA-CA-6717-01 10 117045869 117045869 G T ATRNL1 Nonsense_Mutation p.E793* 0.11 TCGA-CA-6717-01 10 117093839 117093839 G A ATRNL1 Missense_Mutation p.E1029K 0.28 deleterious(0.01) benign(0.355) TCGA-CA-6717-01 10 117221468 117221468 T C ATRNL1 Missense_Mutation p.Y1114H 0.11 deleterious(0) probably_damaging(0.949) TCGA-CA-6717-01 10 117704238 117704238 C A ATRNL1 Missense_Mutation p.S1363Y 0.25 tolerated(0.09) benign(0.176) TCGA-CA-6717-01 10 117704302 117704302 C T ATRNL1 3'UTR 0.11 TCGA-CA-6717-01 10 118030343 118030343 T G GFRA1 Missense_Mutation p.S109R 0.23 deleterious(0.01) probably_damaging(0.949) TCGA-CA-6717-01 10 118138927 118138927 C A CCDC172 3'UTR 0.21 TCGA-CA-6717-01 10 118225670 118225670 C A PNLIPRP3 Missense_Mutation p.S306Y 0.20 tolerated(0.05) possibly_damaging(0.744) TCGA-CA-6717-01 10 118315540 118315540 C T PNLIP Silent p.H280H 0.13 TCGA-CA-6717-01 10 118386508 118386508 C T PNLIPRP2 Missense_Mutation p.S155L 0.10 tolerated(0.28) benign(0.084) TCGA-CA-6717-01 10 118435982 118435982 T C HSPA12A Missense_Mutation p.M440V 0.12 deleterious(0.04) benign(0.171) TCGA-CA-6717-01 10 118628197 118628197 G T ENO4 Missense_Mutation p.D68Y 0.10 deleterious(0) benign(0.035) TCGA-CA-6717-01 10 118635595 118635595 G A ENO4 Missense_Mutation p.S137N 0.27 tolerated(0.4) benign(0.383) TCGA-CA-6717-01 10 118700119 118700119 A G KIAA1598 Missense_Mutation p.F239S 0.27 deleterious(0.01) probably_damaging(0.949) TCGA-CA-6717-01 10 118738812 118738812 G A KIAA1598 Silent p.G22G 0.14 TCGA-CA-6717-01 10 118891786 118891786 C A VAX1 3'Flank 0.22 TCGA-CA-6717-01 10 118957203 118957203 C A KCNK18 Silent p.I68I 0.23 TCGA-CA-6717-01 10 118969347 118969347 C A KCNK18 Missense_Mutation p.S231Y 0.18 deleterious(0) benign(0.001) TCGA-CA-6717-01 10 119043399 119043399 G A PDZD8 Missense_Mutation p.R949C 0.14 deleterious(0.01) benign(0.064) TCGA-CA-6717-01 10 119044354 119044354 T G PDZD8 Missense_Mutation p.K630N 0.09 deleterious(0.03) possibly_damaging(0.511) TCGA-CA-6717-01 10 11963181 11963181 G A UPF2 3'UTR 0.22 TCGA-CA-6717-01 10 119798718 119798718 C A RAB11FIP2 Nonsense_Mutation p.E344* 0.10 TCGA-CA-6717-01 10 119805351 119805351 G T RAB11FIP2 Silent p.I108I 0.09 TCGA-CA-6717-01 10 12009405 12009405 G A UPF2 Missense_Mutation p.R668C 0.10 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 10 120789989 120789989 C T NANOS1 Missense_Mutation p.L226F 0.29 deleterious(0.02) benign(0.127) TCGA-CA-6717-01 10 120792124 120792124 C A NANOS1 3'UTR 0.15 TCGA-CA-6717-01 10 120792817 120792817 T G NANOS1 3'UTR 0.17 TCGA-CA-6717-01 10 120792898 120792898 T C NANOS1 3'UTR 0.19 TCGA-CA-6717-01 10 120810775 120810775 C T EIF3A Missense_Mutation p.R752Q 0.12 deleterious(0) unknown(0) TCGA-CA-6717-01 10 120923690 120923690 G T SFXN4 Missense_Mutation p.L44I 0.18 deleterious(0.04) possibly_damaging(0.53) TCGA-CA-6717-01 10 12126620 12126620 C A DHTKD1 Missense_Mutation p.S131Y 0.09 deleterious(0) possibly_damaging(0.664) TCGA-CA-6717-01 10 121579014 121579014 T G INPP5F Intron 0.12 TCGA-CA-6717-01 10 121693234 121693234 A C SEC23IP Missense_Mutation p.E986D 0.13 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 10 122348819 122348819 C A PPAPDC1A Silent p.S207S 0.17 TCGA-CA-6717-01 10 12279252 12279252 C A CDC123 Missense_Mutation p.F225L 0.18 deleterious(0) probably_damaging(0.96) TCGA-CA-6717-01 10 123241679 123241679 T C FGFR2 Intron 0.16 TCGA-CA-6717-01 10 123325198 123325198 T G FGFR2 Missense_Mutation p.I44L 0.10 tolerated(0.36) probably_damaging(0.976) TCGA-CA-6717-01 10 123733616 123733616 C A NSMCE4A Intron 0.21 TCGA-CA-6717-01 10 123842919 123842919 G T TACC2 Missense_Mutation p.D302Y 0.22 possibly_damaging(0.825) TCGA-CA-6717-01 10 124094412 124094412 C T BTBD16 Missense_Mutation p.S394L 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 124097678 124097678 C T BTBD16 3'Flank 0.23 TCGA-CA-6717-01 10 124152795 124152795 C T PLEKHA1 Nonsense_Mutation p.R27* 0.15 TCGA-CA-6717-01 10 124266263 124266263 C T HTRA1 Silent p.F278F 0.15 TCGA-CA-6717-01 10 124330428 124330428 G A DMBT1 Silent p.S54S 0.12 TCGA-CA-6717-01 10 124331837 124331837 G A DMBT1 Silent p.P65P 0.13 TCGA-CA-6717-01 10 124457377 124457377 A C C10orf120 Missense_Mutation p.L294V 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 10 124594411 124594411 G A CUZD1 Missense_Mutation p.A398V 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-CA-6717-01 10 124598561 124598561 G A CUZD1 Silent p.V140V 0.12 TCGA-CA-6717-01 10 124598712 124598712 A C CUZD1 Missense_Mutation p.I90S 0.22 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 10 124755573 124755573 G A IKZF5 Missense_Mutation p.R85W 0.17 tolerated(0.05) benign(0.003) TCGA-CA-6717-01 10 125426430 125426430 C T GPR26 Silent p.F169F 0.28 TCGA-CA-6717-01 10 125434427 125434427 C T GPR26 Silent p.F254F 0.17 TCGA-CA-6717-01 10 125557511 125557511 G T CPXM2 Silent p.I290I 0.23 TCGA-CA-6717-01 10 126172807 126172807 C A LHPP Silent p.I75I 0.10 TCGA-CA-6717-01 10 126453986 126453986 T G METTL10 Missense_Mutation p.E197D 0.17 tolerated(0.39) possibly_damaging(0.461) TCGA-CA-6717-01 10 126631612 126631612 G T ZRANB1 Nonsense_Mutation p.E184* 0.26 TCGA-CA-6717-01 10 127418045 127418045 T A EDRF1 Missense_Mutation p.L338H 0.11 deleterious(0) probably_damaging(0.922) TCGA-CA-6717-01 10 127426878 127426878 C T EDRF1 Silent p.V615V 0.15 TCGA-CA-6717-01 10 127503611 127503611 T G UROS Missense_Mutation p.K79T 0.12 tolerated(0.15) possibly_damaging(0.607) TCGA-CA-6717-01 10 127503673 127503673 T C UROS Silent p.G58G 0.12 TCGA-CA-6717-01 10 127526789 127526789 T G DHX32 Missense_Mutation p.E683D 0.17 tolerated(0.38) possibly_damaging(0.508) TCGA-CA-6717-01 10 127569298 127569298 A C DHX32 Silent p.V32V 0.08 TCGA-CA-6717-01 10 127668826 127668826 G A FANK1 Missense_Mutation p.R37H 0.20 tolerated(0.14) possibly_damaging(0.617) TCGA-CA-6717-01 10 127677260 127677260 G A FANK1 Intron 0.26 TCGA-CA-6717-01 10 127798363 127798363 A G ADAM12 Missense_Mutation p.I220T 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 12856259 12856259 C T CAMK1D Missense_Mutation p.A236V 0.13 deleterious(0) possibly_damaging(0.715) TCGA-CA-6717-01 10 128823005 128823005 T G DOCK1 Missense_Mutation p.I482M 0.24 deleterious(0) possibly_damaging(0.481) TCGA-CA-6717-01 10 129901281 129901281 G A MKI67 Silent p.S2941S 0.09 TCGA-CA-6717-01 10 129903221 129903221 T G MKI67 Missense_Mutation p.N2295H 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-CA-6717-01 10 129905077 129905077 A C MKI67 Missense_Mutation p.F1676C 0.07 deleterious(0.02) benign(0.07) TCGA-CA-6717-01 10 129913349 129913349 A G MKI67 Silent p.N441N 0.08 TCGA-CA-6717-01 10 13160939 13160939 C T OPTN Silent p.F226F 0.12 TCGA-CA-6717-01 10 131760444 131760444 C A EBF3 Missense_Mutation p.M134I 0.33 deleterious(0.03) benign(0.017) TCGA-CA-6717-01 10 131760448 131760448 G T EBF3 Nonsense_Mutation p.S133* 0.37 TCGA-CA-6717-01 10 132896637 132896637 C A TCERG1L Missense_Mutation p.K512N 0.20 deleterious(0) probably_damaging(0.938) TCGA-CA-6717-01 10 132965090 132965090 C A TCERG1L Missense_Mutation p.Q305H 0.21 deleterious(0.01) benign(0.231) TCGA-CA-6717-01 10 133107439 133107439 C A TCERG1L Missense_Mutation p.D156Y 0.15 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 10 134013880 134013880 C T DPYSL4 Missense_Mutation p.P278S 0.18 deleterious(0.03) possibly_damaging(0.868) TCGA-CA-6717-01 10 134540344 134540344 G A INPP5A Missense_Mutation p.E223K 0.11 tolerated(0.4) benign(0.076) TCGA-CA-6717-01 10 134563093 134563093 C T INPP5A Missense_Mutation p.R269C 0.10 deleterious(0) probably_damaging(0.965) TCGA-CA-6717-01 10 134622111 134622111 C T TTC40 Silent p.A2654A 0.20 TCGA-CA-6717-01 10 134648190 134648190 C T TTC40 Silent p.P2278P 0.09 TCGA-CA-6717-01 10 134712622 134712622 G A TTC40 Silent p.F1020F 0.17 TCGA-CA-6717-01 10 134722710 134722710 G A TTC40 Silent p.L896L 0.21 TCGA-CA-6717-01 10 134736171 134736171 G A TTC40 Missense_Mutation p.A433V 0.19 deleterious(0.01) possibly_damaging(0.901) TCGA-CA-6717-01 10 134942260 134942260 C T GPR123 Missense_Mutation p.R310C 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 134981792 134981792 C T KNDC1 Silent p.F112F 0.15 TCGA-CA-6717-01 10 135125431 135125431 C A ZNF511 Intron 0.13 TCGA-CA-6717-01 10 135352536 135352536 C A CYP2E1 3'UTR 0.21 TCGA-CA-6717-01 10 135370622 135370622 G T SYCE1 Missense_Mutation p.S138Y 0.12 deleterious(0.01) possibly_damaging(0.704) TCGA-CA-6717-01 10 135373633 135373633 A G SYCE1 Missense_Mutation p.I33T 0.09 tolerated(1) benign(0.033) TCGA-CA-6717-01 10 13656036 13656036 G T PRPF18 Nonsense_Mutation p.E248* 0.10 TCGA-CA-6717-01 10 14862152 14862152 T C CDNF Missense_Mutation p.T131A 0.12 deleterious(0.05) benign(0.001) TCGA-CA-6717-01 10 14879923 14879923 G A CDNF Missense_Mutation p.A8V 0.14 tolerated(0.39) benign(0.007) TCGA-CA-6717-01 10 14913629 14913629 T G HSPA14 3'UTR 0.25 TCGA-CA-6717-01 10 14939488 14939488 T C SUV39H2 Missense_Mutation p.M274T 0.10 tolerated(0.06) benign(0.102) TCGA-CA-6717-01 10 14944620 14944620 T G SUV39H2 3'Flank 0.19 TCGA-CA-6717-01 10 14950435 14950435 T G DCLRE1C Missense_Mutation p.K684T 0.22 deleterious_low_confidence(0.01) benign(0.193) TCGA-CA-6717-01 10 14950589 14950589 C A DCLRE1C Nonsense_Mutation p.E633* 0.18 TCGA-CA-6717-01 10 15014571 15014571 C A MEIG1 Missense_Mutation p.F66L 0.11 deleterious(0.01) benign(0.269) TCGA-CA-6717-01 10 15014593 15014593 G T MEIG1 Nonsense_Mutation p.E74* 0.21 TCGA-CA-6717-01 10 15103764 15103764 G T OLAH Nonsense_Mutation p.E122* 0.12 TCGA-CA-6717-01 10 15138526 15138526 A C C10orf111 Missense_Mutation p.Y100D 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-CA-6717-01 10 15145549 15145549 A C RPP38 Missense_Mutation p.K79T 0.15 tolerated(0.18) benign(0.005) TCGA-CA-6717-01 10 15151791 15151791 T C NMT2 Silent p.T462T 0.09 TCGA-CA-6717-01 10 15628607 15628607 G T ITGA8 Missense_Mutation p.A783D 0.15 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 10 15686119 15686119 G A ITGA8 Silent p.L437L 0.17 TCGA-CA-6717-01 10 16526697 16526697 G A PTER Missense_Mutation p.R105Q 0.14 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 10 16882977 16882977 A C CUBN Missense_Mutation p.F3245V 0.17 tolerated(0.09) probably_damaging(1) TCGA-CA-6717-01 10 16970155 16970155 C A CUBN Splice_Site p.X2091_splice 0.10 TCGA-CA-6717-01 10 16981013 16981013 G T CUBN Silent p.I1894I 0.17 TCGA-CA-6717-01 10 17026245 17026245 T G CUBN Missense_Mutation p.I1462L 0.12 tolerated(1) benign(0.008) TCGA-CA-6717-01 10 17110112 17110112 T G CUBN Missense_Mutation p.N987H 0.09 tolerated(0.49) possibly_damaging(0.55) TCGA-CA-6717-01 10 17127755 17127755 G A CUBN Nonsense_Mutation p.R651* 0.29 TCGA-CA-6717-01 10 17130311 17130311 G A CUBN Missense_Mutation p.S600F 0.17 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 10 17195456 17195456 T G TRDMT1 Intron 0.20 TCGA-CA-6717-01 10 17271826 17271826 C T VIM Silent p.L135L 0.11 TCGA-CA-6717-01 10 17272655 17272655 G A VIM Silent p.Q190Q 0.34 TCGA-CA-6717-01 10 17276737 17276737 C T VIM Missense_Mutation p.R310C 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 17401520 17401520 T G ST8SIA6 Missense_Mutation p.N124H 0.21 tolerated(0.06) benign(0.005) TCGA-CA-6717-01 10 17401529 17401529 C A ST8SIA6 Nonsense_Mutation p.E121* 0.24 TCGA-CA-6717-01 10 18242390 18242390 G A SLC39A12 Missense_Mutation p.R62K 0.13 tolerated(0.35) benign(0.005) TCGA-CA-6717-01 10 18250552 18250552 T G SLC39A12 Missense_Mutation p.F102V 0.10 tolerated(0.51) benign(0.002) TCGA-CA-6717-01 10 20506473 20506473 C A PLXDC2 Missense_Mutation p.T414N 0.16 tolerated(0.07) benign(0.046) TCGA-CA-6717-01 10 21178869 21178869 T C NEBL Missense_Mutation p.K55E 0.13 deleterious(0) possibly_damaging(0.73) TCGA-CA-6717-01 10 21804419 21804419 C A SKIDA1 Missense_Mutation p.R778I 0.13 deleterious(0) unknown(0) TCGA-CA-6717-01 10 21807566 21807566 A G SKIDA1 5'UTR 0.26 TCGA-CA-6717-01 10 21808516 21808516 T C SKIDA1 5'UTR 0.15 TCGA-CA-6717-01 10 21959382 21959382 A G MLLT10 Missense_Mutation p.Y267C 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 10 22022872 22022872 C T MLLT10 Missense_Mutation p.A891V 0.08 deleterious(0.01) benign(0.176) TCGA-CA-6717-01 10 23295823 23295823 G A ARMC3 Missense_Mutation p.G581D 0.16 tolerated(0.07) benign(0.252) TCGA-CA-6717-01 10 23297781 23297781 C A ARMC3 Missense_Mutation p.P656T 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6717-01 10 23321936 23321936 G A ARMC3 Missense_Mutation p.R798Q 0.13 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 10 23729841 23729841 A G OTUD1 3'UTR 0.12 TCGA-CA-6717-01 10 24834951 24834951 A G KIAA1217 Missense_Mutation p.T1844A 0.10 tolerated(0.34) benign(0.042) TCGA-CA-6717-01 10 24835242 24835242 G T KIAA1217 Nonsense_Mutation p.E1941* 0.25 TCGA-CA-6717-01 10 24874163 24874163 T C ARHGAP21 Silent p.L1685L 0.12 TCGA-CA-6717-01 10 24886893 24886893 C A ARHGAP21 Nonsense_Mutation p.E1060* 0.17 TCGA-CA-6717-01 10 24910146 24910146 T C ARHGAP21 Silent p.S226S 0.08 TCGA-CA-6717-01 10 25273172 25273172 A G ENKUR 3'UTR 0.19 TCGA-CA-6717-01 10 25315416 25315416 T G THNSL1 3'UTR 0.09 TCGA-CA-6717-01 10 25701358 25701358 G T GPR158 Missense_Mutation p.D431Y 0.15 deleterious(0.04) possibly_damaging(0.879) TCGA-CA-6717-01 10 26432396 26432396 A G MYO3A Missense_Mutation p.D761G 0.12 tolerated(1) benign(0.002) TCGA-CA-6717-01 10 26443691 26443691 C A MYO3A Missense_Mutation p.A911D 0.16 tolerated(0.2) benign(0.043) TCGA-CA-6717-01 10 26459384 26459384 T G MYO3A Missense_Mutation p.I1105S 0.08 deleterious(0.03) benign(0.018) TCGA-CA-6717-01 10 26492010 26492010 G T MYO3A Missense_Mutation p.Q1568H 0.15 deleterious_low_confidence(0.03) benign(0.429) TCGA-CA-6717-01 10 27040543 27040543 C A ABI1 Missense_Mutation p.K445N 0.11 deleterious(0.01) benign(0.067) TCGA-CA-6717-01 10 27329022 27329022 A G ANKRD26 Silent p.L749L 0.17 TCGA-CA-6717-01 10 27350071 27350071 A G ANKRD26 Splice_Site p.X488_splice 0.21 TCGA-CA-6717-01 10 27400945 27400945 A C YME1L1 Missense_Mutation p.I761M 0.11 deleterious(0) possibly_damaging(0.859) TCGA-CA-6717-01 10 27434552 27434552 A C YME1L1 Intron 0.21 TCGA-CA-6717-01 10 27459081 27459081 C A MASTL Missense_Mutation p.S398Y 0.10 deleterious(0.02) probably_damaging(0.984) TCGA-CA-6717-01 10 27524115 27524115 T G ACBD5 Missense_Mutation p.M70L 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-CA-6717-01 10 27538312 27538312 G A RP11-85G18.6 Intron 0.44 TCGA-CA-6717-01 10 27687354 27687354 A C PTCHD3 Missense_Mutation p.F725V 0.18 deleterious(0.01) benign(0.439) TCGA-CA-6717-01 10 27687545 27687545 A C PTCHD3 Missense_Mutation p.V661G 0.24 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 10 27822772 27822772 A G RAB18 Missense_Mutation p.K123R 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 28030313 28030313 C A MKX Missense_Mutation p.K103N 0.11 deleterious(0) possibly_damaging(0.805) TCGA-CA-6717-01 10 28879762 28879762 G A WAC Splice_Site p.X204_splice 0.13 TCGA-CA-6717-01 10 295066 295066 A G ZMYND11 Intron 0.15 TCGA-CA-6717-01 10 29770588 29770588 G T SVIL Missense_Mutation p.F1675L 0.19 deleterious(0) benign(0.32) TCGA-CA-6717-01 10 29783924 29783924 C T SVIL Missense_Mutation p.E1254K 0.08 tolerated(0.22) benign(0.233) TCGA-CA-6717-01 10 29844003 29844003 C A SVIL 5'UTR 0.12 TCGA-CA-6717-01 10 30602633 30602633 C T MTPAP Missense_Mutation p.E552K 0.10 deleterious(0.03) benign(0.38) TCGA-CA-6717-01 10 31137578 31137578 G A ZNF438 Silent p.L586L 0.18 TCGA-CA-6717-01 10 31138175 31138175 G A ZNF438 Missense_Mutation p.R387W 0.11 tolerated(0.11) benign(0.011) TCGA-CA-6717-01 10 3141527 3141527 T C PFKP Missense_Mutation p.S83P 0.09 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 10 3149416 3149416 G A PFKP Missense_Mutation p.R262Q 0.14 tolerated(0.26) benign(0.001) TCGA-CA-6717-01 10 31809278 31809278 G C ZEB1 Missense_Mutation p.E340Q 0.12 deleterious(0.04) probably_damaging(0.968) TCGA-CA-6717-01 10 31810564 31810564 C A ZEB1 Silent p.P768P 0.20 TCGA-CA-6717-01 10 32099657 32099657 T G ARHGAP12 Missense_Mutation p.N657T 0.28 tolerated(0.09) benign(0.008) TCGA-CA-6717-01 10 32103284 32103284 T G ARHGAP12 Silent p.V579V 0.11 TCGA-CA-6717-01 10 32115310 32115310 C A ARHGAP12 Missense_Mutation p.K484N 0.16 deleterious(0) probably_damaging(0.931) TCGA-CA-6717-01 10 32143107 32143107 T C ARHGAP12 Missense_Mutation p.S326G 0.19 deleterious(0.03) benign(0.089) TCGA-CA-6717-01 10 32197458 32197458 T G ARHGAP12 Missense_Mutation p.K109T 0.21 deleterious(0.03) benign(0.089) TCGA-CA-6717-01 10 32580238 32580238 G A EPC1 Silent p.G276G 0.19 TCGA-CA-6717-01 10 32581512 32581512 G A EPC1 Nonsense_Mutation p.R243* 0.08 TCGA-CA-6717-01 10 32740795 32740795 G T CCDC7 Missense_Mutation p.K75N 0.08 tolerated(0.17) possibly_damaging(0.52) TCGA-CA-6717-01 10 32760125 32760125 A C CCDC7 Missense_Mutation p.K215T 0.15 tolerated(0.23) possibly_damaging(0.599) TCGA-CA-6717-01 10 32833179 32833179 A C CCDC7 Missense_Mutation p.M362L 0.17 tolerated(0.46) benign(0.029) TCGA-CA-6717-01 10 32974905 32974905 T C C10ORF68 Silent p.N17N 0.13 TCGA-CA-6717-01 10 33134820 33134820 C T C10ORF68 Silent p.F422F 0.10 TCGA-CA-6717-01 10 33200531 33200531 A G ITGB1 Silent p.C592C 0.12 TCGA-CA-6717-01 10 34671478 34671478 C A PARD3 Missense_Mutation p.Q463H 0.15 tolerated(0.06) benign(0.19) TCGA-CA-6717-01 10 35320266 35320266 A G CUL2 Missense_Mutation p.S469P 0.18 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 10 35426780 35426780 G T CREM Missense_Mutation p.R6M 0.12 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-CA-6717-01 10 35897630 35897630 C T GJD4 3'UTR 0.19 TCGA-CA-6717-01 10 37430935 37430935 G T ANKRD30A Missense_Mutation p.E314D 0.18 tolerated(0.58) possibly_damaging(0.636) TCGA-CA-6717-01 10 37431029 37431029 A G ANKRD30A Missense_Mutation p.T346A 0.13 tolerated(0.35) possibly_damaging(0.636) TCGA-CA-6717-01 10 37441036 37441036 C A ANKRD30A Missense_Mutation p.S509Y 0.07 deleterious(0.04) possibly_damaging(0.831) TCGA-CA-6717-01 10 37505241 37505241 A G ANKRD30A Missense_Mutation p.K945R 0.12 deleterious(0.02) possibly_damaging(0.636) TCGA-CA-6717-01 10 37508055 37508055 T G ANKRD30A Missense_Mutation p.L1083V 0.15 tolerated(0.65) possibly_damaging(0.636) TCGA-CA-6717-01 10 37508351 37508351 T C ANKRD30A Silent p.V1181V 0.11 TCGA-CA-6717-01 10 37520441 37520441 G T ANKRD30A 3'UTR 0.12 TCGA-CA-6717-01 10 38246471 38246471 G A ZNF25 Missense_Mutation p.P7S 0.12 tolerated(0.74) benign(0.005) TCGA-CA-6717-01 10 38343469 38343469 C T ZNF33A Silent p.F139F 0.10 TCGA-CA-6717-01 10 410451 410451 G A DIP2C Silent p.F780F 0.20 TCGA-CA-6717-01 10 430065 430065 G A DIP2C Missense_Mutation p.S593L 0.17 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 10 43016515 43016515 C T ZNF37BP RNA 0.09 TCGA-CA-6717-01 10 43088317 43088317 T G ZNF33B Missense_Mutation p.E694A 0.23 deleterious(0.04) benign(0.03) TCGA-CA-6717-01 10 43088401 43088401 T G ZNF33B Missense_Mutation p.K666T 0.21 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 10 43088556 43088556 A G ZNF33B Silent p.C614C 0.11 TCGA-CA-6717-01 10 43312856 43312856 T G BMS1 Missense_Mutation p.L832V 0.10 deleterious(0.01) possibly_damaging(0.828) TCGA-CA-6717-01 10 43623723 43623723 C A RET 3'UTR 0.12 TCGA-CA-6717-01 10 43650484 43650484 C T CSGALNACT2 5'UTR 0.28 TCGA-CA-6717-01 10 43650730 43650730 C T CSGALNACT2 Missense_Mutation p.P45S 0.09 tolerated(0.31) possibly_damaging(0.754) TCGA-CA-6717-01 10 43701441 43701441 C A RASGEF1A Missense_Mutation p.D42Y 0.24 deleterious(0) possibly_damaging(0.757) TCGA-CA-6717-01 10 44052385 44052385 C T ZNF239 Silent p.G381G 0.22 TCGA-CA-6717-01 10 44053092 44053092 A C ZNF239 Missense_Mutation p.S146A 0.15 deleterious(0.01) benign(0.049) TCGA-CA-6717-01 10 44112108 44112108 G T ZNF485 Missense_Mutation p.R206I 0.33 deleterious(0.02) possibly_damaging(0.462) TCGA-CA-6717-01 10 45472981 45472981 C T C10orf10 Silent p.P166P 0.18 TCGA-CA-6717-01 10 45602428 45602428 G T RSU1P2 RNA 0.29 TCGA-CA-6717-01 10 45891356 45891356 G T ALOX5 Nonsense_Mutation p.E135* 0.13 TCGA-CA-6717-01 10 45958926 45958926 C T MARCH8 Intron 0.22 TCGA-CA-6717-01 10 46122029 46122029 G A ZFAND4 Silent p.S414S 0.13 TCGA-CA-6717-01 10 47747006 47747006 C T ANXA8L2 5'UTR 0.10 TCGA-CA-6717-01 10 48373087 48373087 A G ZNF488 3'UTR 0.12 TCGA-CA-6717-01 10 48373866 48373866 A C ZNF488 3'UTR 0.15 TCGA-CA-6717-01 10 48383857 48383857 G A RBP3 Silent p.H1125H 0.28 TCGA-CA-6717-01 10 48390485 48390485 G A RBP3 Silent p.G131G 0.28 TCGA-CA-6717-01 10 49371426 49371426 C T FRMPD2 Missense_Mutation p.E1276K 0.07 deleterious(0.03) benign(0.275) TCGA-CA-6717-01 10 49917833 49917833 A C WDFY4 Missense_Mutation p.K19T 0.29 tolerated_low_confidence(0.18) benign(0.003) TCGA-CA-6717-01 10 49939595 49939595 A C WDFY4 Missense_Mutation p.M524L 0.40 tolerated(1) benign(0) TCGA-CA-6717-01 10 49994879 49994879 A G WDFY4 Missense_Mutation p.R1258G 0.08 tolerated(0.18) possibly_damaging(0.65) TCGA-CA-6717-01 10 49996616 49996616 G T WDFY4 Nonsense_Mutation p.E1284* 0.10 TCGA-CA-6717-01 10 50311862 50311862 A C VSTM4 Intron 0.09 TCGA-CA-6717-01 10 5032033 5032033 T G AKR1C2 3'UTR 0.11 TCGA-CA-6717-01 10 50363912 50363912 C A C10orf128 3'UTR 0.14 TCGA-CA-6717-01 10 50532613 50532613 T C C10orf71 Missense_Mutation p.S675P 0.27 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 50678483 50678483 C T ERCC6 Missense_Mutation p.E1175K 0.11 tolerated(0.26) benign(0.01) TCGA-CA-6717-01 10 50713973 50713973 C T ERCC6 Missense_Mutation p.E495K 0.20 deleterious(0.03) possibly_damaging(0.734) TCGA-CA-6717-01 10 50818900 50818900 C T SLC18A3 Silent p.I38I 0.19 TCGA-CA-6717-01 10 50820596 50820596 G A SLC18A3 3'UTR 0.13 TCGA-CA-6717-01 10 50820615 50820615 C T SLC18A3 3'UTR 0.23 TCGA-CA-6717-01 10 50859978 50859978 G A CHAT Silent p.G520G 0.12 TCGA-CA-6717-01 10 50902669 50902669 C A C10orf53 Intron 0.26 TCGA-CA-6717-01 10 50952736 50952736 C A OGDHL Missense_Mutation p.K564N 0.13 tolerated(0.07) benign(0.12) TCGA-CA-6717-01 10 50960261 50960261 T G OGDHL Missense_Mutation p.K171T 0.15 tolerated(0.18) benign(0.025) TCGA-CA-6717-01 10 50966610 50966610 C T OGDHL Missense_Mutation p.R10H 0.15 deleterious(0.05) benign(0.157) TCGA-CA-6717-01 10 51027471 51027471 T C PARG Missense_Mutation p.D464G 0.14 tolerated(0.18) benign(0.358) TCGA-CA-6717-01 10 5136661 5136661 A C AKR1C3 Missense_Mutation p.K9Q 0.11 tolerated(0.1) benign(0.001) TCGA-CA-6717-01 10 5141527 5141527 G A AKR1C3 Silent p.E152E 0.09 TCGA-CA-6717-01 10 52003017 52003017 C T ASAH2 Missense_Mutation p.R152Q 0.18 deleterious(0) probably_damaging(0.965) TCGA-CA-6717-01 10 52390250 52390250 C A RP11-50E11.3 RNA 0.19 TCGA-CA-6717-01 10 52502698 52502698 G A ASAH2B Missense_Mutation p.R5Q 0.12 tolerated_low_confidence(1) benign(0) TCGA-CA-6717-01 10 52569741 52569741 C T A1CF Missense_Mutation p.E516K 0.10 deleterious(0.01) possibly_damaging(0.78) TCGA-CA-6717-01 10 52575869 52575869 G T A1CF Silent p.V354V 0.10 TCGA-CA-6717-01 10 53457486 53457486 T G CSTF2T Missense_Mutation p.Q608H 0.14 deleterious(0) unknown(0) TCGA-CA-6717-01 10 53458098 53458098 A G CSTF2T Silent p.G404G 0.10 TCGA-CA-6717-01 10 53814264 53814264 A G PRKG1 Silent p.E261E 0.14 TCGA-CA-6717-01 10 54048505 54048505 G A PRKG1 Missense_Mutation p.D577N 0.16 deleterious(0) possibly_damaging(0.833) TCGA-CA-6717-01 10 54048727 54048727 T C PRKG1 Silent p.N623N 0.12 TCGA-CA-6717-01 10 54528162 54528162 G T MBL2 Missense_Mutation p.S161Y 0.14 deleterious(0.01) probably_damaging(0.946) TCGA-CA-6717-01 10 54528245 54528245 T G MBL2 Missense_Mutation p.Q133H 0.11 deleterious(0) benign(0.341) TCGA-CA-6717-01 10 5488708 5488708 T G NET1 Intron 0.16 TCGA-CA-6717-01 10 55582043 55582043 G A PCDH15 Missense_Mutation p.P1817S 0.07 tolerated_low_confidence(0.37) unknown(0) TCGA-CA-6717-01 10 55582544 55582544 C A PCDH15 Nonsense_Mutation p.E1650* 0.11 TCGA-CA-6717-01 10 55582879 55582879 A G PCDH15 Missense_Mutation p.V1538A 0.23 tolerated_low_confidence(1) benign(0.003) TCGA-CA-6717-01 10 55826564 55826564 A C PCDH15 Missense_Mutation p.L725V 0.07 tolerated(0.06) benign(0.029) TCGA-CA-6717-01 10 55944906 55944906 A C PCDH15 Silent p.T476T 0.23 TCGA-CA-6717-01 10 55945028 55945028 T C PCDH15 Missense_Mutation p.T436A 0.22 tolerated(0.18) possibly_damaging(0.679) TCGA-CA-6717-01 10 55955525 55955525 G T PCDH15 Missense_Mutation p.A408D 0.21 deleterious(0) possibly_damaging(0.811) TCGA-CA-6717-01 10 55955577 55955577 G T PCDH15 Missense_Mutation p.Q391K 0.17 deleterious(0.02) possibly_damaging(0.884) TCGA-CA-6717-01 10 5762627 5762627 A T FAM208B Missense_Mutation p.S8C 0.09 deleterious(0) probably_damaging(0.962) TCGA-CA-6717-01 10 5777404 5777404 A G FAM208B Missense_Mutation p.T448A 0.11 tolerated(0.16) benign(0.043) TCGA-CA-6717-01 10 5777452 5777452 A G FAM208B Missense_Mutation p.R464G 0.14 deleterious(0.02) possibly_damaging(0.907) TCGA-CA-6717-01 10 5782215 5782215 A C FAM208B Missense_Mutation p.K694N 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 5790063 5790063 G T FAM208B Missense_Mutation p.R1560I 0.09 deleterious(0) possibly_damaging(0.901) TCGA-CA-6717-01 10 5959402 5959402 G A FBXO18 Missense_Mutation p.S654N 0.19 tolerated(0.18) benign(0.099) TCGA-CA-6717-01 10 60154688 60154688 T C TFAM Silent p.L199L 0.09 TCGA-CA-6717-01 10 61004890 61004890 A C PHYHIPL Missense_Mutation p.K224Q 0.17 tolerated(0.19) possibly_damaging(0.709) TCGA-CA-6717-01 10 61005211 61005211 G T PHYHIPL Nonsense_Mutation p.E331* 0.10 TCGA-CA-6717-01 10 61011369 61011369 C A FAM13C Nonsense_Mutation p.E534* 0.23 TCGA-CA-6717-01 10 61718169 61718169 C T C10orf40 Silent p.E87E 0.21 TCGA-CA-6717-01 10 61815564 61815564 G T ANK3 Missense_Mutation p.S4306Y 0.11 benign(0.241) TCGA-CA-6717-01 10 61829217 61829217 G T ANK3 Missense_Mutation p.L3808M 0.12 probably_damaging(0.99) TCGA-CA-6717-01 10 61834184 61834184 A C ANK3 Missense_Mutation p.L2152R 0.09 probably_damaging(0.99) TCGA-CA-6717-01 10 61967887 61967887 G A ANK3 Silent p.Y367Y 0.19 TCGA-CA-6717-01 10 61994475 61994475 G A ANK3 Nonsense_Mutation p.R290* 0.14 TCGA-CA-6717-01 10 62547872 62547872 C A CDK1 Missense_Mutation p.L125I 0.13 tolerated(0.2) benign(0.223) TCGA-CA-6717-01 10 63191039 63191039 C T TMEM26 Missense_Mutation p.D108N 0.16 tolerated(0.2) benign(0.01) TCGA-CA-6717-01 10 63212826 63212826 A G TMEM26 Missense_Mutation p.V5A 0.11 deleterious(0.03) possibly_damaging(0.887) TCGA-CA-6717-01 10 63441038 63441038 C A C10orf107 Missense_Mutation p.T13N 0.12 tolerated(0.2) probably_damaging(0.996) TCGA-CA-6717-01 10 63520635 63520635 A G C10orf107 Silent p.E142E 0.16 TCGA-CA-6717-01 10 63662155 63662155 A T ARID5B Missense_Mutation p.N87Y 0.15 deleterious(0) possibly_damaging(0.574) TCGA-CA-6717-01 10 63852687 63852687 G T ARID5B Silent p.G1155G 0.09 TCGA-CA-6717-01 10 63957875 63957875 A G RTKN2 Missense_Mutation p.L541S 0.09 tolerated(0.25) benign(0.007) TCGA-CA-6717-01 10 64022544 64022544 G A RTKN2 Nonsense_Mutation p.R33* 0.14 TCGA-CA-6717-01 10 64566809 64566809 G T ADO 3'UTR 0.13 TCGA-CA-6717-01 10 64966570 64966570 C A JMJD1C Missense_Mutation p.R1620I 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 64966741 64966741 T G JMJD1C Missense_Mutation p.K1563T 0.18 deleterious(0) possibly_damaging(0.645) TCGA-CA-6717-01 10 65140191 65140191 C T JMJD1C Missense_Mutation p.V74I 0.21 deleterious(0.03) probably_damaging(0.99) TCGA-CA-6717-01 10 68687573 68687573 C T LRRTM3 Missense_Mutation p.S300F 0.10 deleterious(0.01) possibly_damaging(0.808) TCGA-CA-6717-01 10 68687785 68687785 C A LRRTM3 Missense_Mutation p.L371M 0.10 tolerated(0.2) benign(0.025) TCGA-CA-6717-01 10 68979455 68979455 T G CTNNA3 Silent p.V251V 0.09 TCGA-CA-6717-01 10 69692354 69692354 C T HERC4 Silent p.K954K 0.08 TCGA-CA-6717-01 10 69700825 69700825 A G HERC4 Missense_Mutation p.V800A 0.11 tolerated(0.07) benign(0.199) TCGA-CA-6717-01 10 69750919 69750919 T G HERC4 Missense_Mutation p.N437H 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 10 69832742 69832742 C T HERC4 Missense_Mutation p.G42R 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 10 69881295 69881295 C T MYPN Nonsense_Mutation p.R34* 0.26 TCGA-CA-6717-01 10 69921546 69921546 A G MYPN Intron 0.13 TCGA-CA-6717-01 10 69921565 69921565 G A MYPN Intron 0.19 TCGA-CA-6717-01 10 70056858 70056858 A G PBLD Intron 0.19 TCGA-CA-6717-01 10 70153705 70153705 G T RUFY2 Intron 0.18 TCGA-CA-6717-01 10 70227993 70227993 T A DNA2 Missense_Mutation p.I196L 0.10 deleterious(0.03) possibly_damaging(0.477) TCGA-CA-6717-01 10 70333142 70333142 C T TET1 Silent p.F349F 0.14 TCGA-CA-6717-01 10 70360758 70360758 G A TET1 Silent p.R645R 0.13 TCGA-CA-6717-01 10 70404889 70404889 A C TET1 Missense_Mutation p.K801N 0.23 tolerated(1) benign(0) TCGA-CA-6717-01 10 70644366 70644366 C A STOX1 Missense_Mutation p.L272I 0.21 tolerated(0.34) benign(0.33) TCGA-CA-6717-01 10 70645777 70645777 T G STOX1 Missense_Mutation p.I742S 0.14 tolerated(0.08) benign(0.065) TCGA-CA-6717-01 10 70847866 70847866 C T SRGN 5'Flank 0.17 TCGA-CA-6717-01 10 70916916 70916916 T C VPS26A Missense_Mutation p.L128S 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 70945750 70945750 A C SUPV3L1 Silent p.V93V 0.12 TCGA-CA-6717-01 10 71060576 71060576 T C HK1 Intron 0.18 TCGA-CA-6717-01 10 71075735 71075735 T G HK1 Intron 0.10 TCGA-CA-6717-01 10 71176053 71176053 T C TACR2 Silent p.E9E 0.14 TCGA-CA-6717-01 10 71692355 71692355 G A COL13A1 Missense_Mutation p.A564T 0.09 tolerated(0.46) benign(0.001) TCGA-CA-6717-01 10 72179718 72179718 C A EIF4EBP2 Missense_Mutation p.S65Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 72289649 72289649 G A PALD1 Missense_Mutation p.R98H 0.19 deleterious(0.02) benign(0.143) TCGA-CA-6717-01 10 72292773 72292773 G A PALD1 Missense_Mutation p.E273K 0.15 tolerated(0.84) benign(0.095) TCGA-CA-6717-01 10 72518005 72518005 T G ADAMTS14 Missense_Mutation p.S1051A 0.18 tolerated(0.6) benign(0.002) TCGA-CA-6717-01 10 72520312 72520312 G T ADAMTS14 Missense_Mutation p.Q1128H 0.17 tolerated(0.14) benign(0.081) TCGA-CA-6717-01 10 72531153 72531153 C T TBATA Silent p.S345S 0.19 TCGA-CA-6717-01 10 72541683 72541683 G A TBATA Missense_Mutation p.R51W 0.18 tolerated(0.06) possibly_damaging(0.54) TCGA-CA-6717-01 10 72630852 72630852 T G SGPL1 Silent p.S286S 0.18 TCGA-CA-6717-01 10 73104039 73104039 T G SLC29A3 Missense_Mutation p.L125R 0.15 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 10 7326187 7326187 G A SFMBT2 Intron 0.20 TCGA-CA-6717-01 10 75008168 75008168 T G DNAJC9 5'UTR 0.21 TCGA-CA-6717-01 10 75010702 75010702 C T MRPS16 Missense_Mutation p.E108K 0.33 tolerated(1) probably_damaging(0.997) TCGA-CA-6717-01 10 75037946 75037946 T G TTC18 Missense_Mutation p.T867P 0.16 tolerated(0.3) benign(0.029) TCGA-CA-6717-01 10 75114585 75114585 C A TTC18 5'UTR 0.26 TCGA-CA-6717-01 10 75258739 75258739 T C USP54 Missense_Mutation p.Y1568C 0.15 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-CA-6717-01 10 75335403 75335403 C A USP54 Missense_Mutation p.R5I 0.13 deleterious(0) possibly_damaging(0.467) TCGA-CA-6717-01 10 75410673 75410673 G T SYNPO2L Intron 0.13 TCGA-CA-6717-01 10 75556733 75556733 C G ZSWIM8 Missense_Mutation p.P1079A 0.25 tolerated(0.62) benign(0.001) TCGA-CA-6717-01 10 75557825 75557825 A G ZSWIM8 Missense_Mutation p.T1317A 0.22 deleterious(0.04) probably_damaging(0.944) TCGA-CA-6717-01 10 75562330 75562330 C T NDST2 Missense_Mutation p.R844H 0.14 tolerated(0.09) probably_damaging(0.95) TCGA-CA-6717-01 10 75632763 75632763 C A CAMK2G Missense_Mutation p.K48N 0.16 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-CA-6717-01 10 75830740 75830740 A C VCL Missense_Mutation p.K133T 0.12 deleterious(0) possibly_damaging(0.827) TCGA-CA-6717-01 10 75834567 75834567 G A VCL Missense_Mutation p.R230H 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 75868913 75868913 A G VCL Missense_Mutation p.K915R 0.12 tolerated(0.16) probably_damaging(0.998) TCGA-CA-6717-01 10 75883642 75883642 A G AP3M1 Missense_Mutation p.Y395H 0.09 tolerated(0.15) benign(0.078) TCGA-CA-6717-01 10 7618744 7618744 C A ITIH5 Missense_Mutation p.Q550H 0.21 tolerated(0.21) benign(0.005) TCGA-CA-6717-01 10 7627894 7627894 C A ITIH5 Missense_Mutation p.V360L 0.10 tolerated(0.3) benign(0.012) TCGA-CA-6717-01 10 7627908 7627908 A G ITIH5 Missense_Mutation p.I355T 0.11 deleterious(0) benign(0.419) TCGA-CA-6717-01 10 76729459 76729459 A G KAT6B Missense_Mutation p.N258D 0.10 probably_damaging(0.993) TCGA-CA-6717-01 10 76744840 76744840 T C KAT6B Silent p.V792V 0.24 TCGA-CA-6717-01 10 76788788 76788788 T G KAT6B Silent p.S1402S 0.12 TCGA-CA-6717-01 10 7682768 7682768 T G ITIH5 Missense_Mutation p.K117T 0.07 deleterious(0) possibly_damaging(0.826) TCGA-CA-6717-01 10 76865574 76865574 G A DUSP13 Intron 0.08 TCGA-CA-6717-01 10 76867951 76867951 G A DUSP13 Intron 0.15 TCGA-CA-6717-01 10 7745269 7745269 C A ITIH2 5'UTR 0.31 TCGA-CA-6717-01 10 7751024 7751024 C A ITIH2 Missense_Mutation p.Q78K 0.20 tolerated(0.17) benign(0.008) TCGA-CA-6717-01 10 7762890 7762890 C T ITIH2 Silent p.F234F 0.16 TCGA-CA-6717-01 10 7769768 7769768 T C ITIH2 Missense_Mutation p.V419A 0.18 deleterious(0) probably_damaging(0.91) TCGA-CA-6717-01 10 7774410 7774410 A G ITIH2 Missense_Mutation p.Y586C 0.25 deleterious(0) probably_damaging(0.968) TCGA-CA-6717-01 10 7841824 7841824 T C ATP5C1 Missense_Mutation p.L173S 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 78637359 78637359 G T KCNMA1 3'UTR 0.25 TCGA-CA-6717-01 10 78644763 78644763 C A KCNMA1 3'Flank 0.08 TCGA-CA-6717-01 10 78647242 78647242 C A KCNMA1 Nonsense_Mutation p.E1148* 0.14 TCGA-CA-6717-01 10 78839285 78839285 T G KCNMA1 Missense_Mutation p.H516P 0.09 tolerated(0.06) possibly_damaging(0.873) TCGA-CA-6717-01 10 78839293 78839293 C A KCNMA1 Missense_Mutation p.K513N 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 79814360 79814360 G T RPS24 Missense_Mutation p.K154N 0.12 deleterious_low_confidence(0.01) benign(0.001) TCGA-CA-6717-01 10 8006552 8006552 A C TAF3 Missense_Mutation p.K360T 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.502) TCGA-CA-6717-01 10 81274341 81274341 G T EIF5AL1 3'UTR 0.13 TCGA-CA-6717-01 10 81276026 81276026 A C EIF5AL1 3'UTR 0.10 TCGA-CA-6717-01 10 81316106 81316106 A C SFTPA2 3'UTR 0.33 TCGA-CA-6717-01 10 81697840 81697840 G A SFTPD Missense_Mutation p.A299V 0.09 deleterious(0) possibly_damaging(0.895) TCGA-CA-6717-01 10 82098209 82098209 A G DYDC1 Intron 0.19 TCGA-CA-6717-01 10 82277776 82277776 A G TSPAN14 3'UTR 0.12 TCGA-CA-6717-01 10 82403865 82403865 C A SH2D4B 3'UTR 0.17 TCGA-CA-6717-01 10 84498371 84498371 T G NRG3 Missense_Mutation p.F331C 0.20 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 10 84745186 84745186 G A NRG3 Missense_Mutation p.R639Q 0.23 tolerated_low_confidence(0.15) possibly_damaging(0.712) TCGA-CA-6717-01 10 85910533 85910533 T G GHITM Missense_Mutation p.L284V 0.11 deleterious(0.01) probably_damaging(0.951) TCGA-CA-6717-01 10 85978958 85978958 G A CDHR1 3'Flank 0.18 TCGA-CA-6717-01 10 85984098 85984098 C A LRIT2 Nonsense_Mutation p.E295* 0.11 TCGA-CA-6717-01 10 86001163 86001163 C A LRIT1 Missense_Mutation p.L11F 0.16 tolerated(0.06) probably_damaging(0.997) TCGA-CA-6717-01 10 87362369 87362369 C T GRID1 Silent p.S897S 0.23 TCGA-CA-6717-01 10 876909 876909 T A LARP4B Missense_Mutation p.E253D 0.16 deleterious(0.01) probably_damaging(0.948) TCGA-CA-6717-01 10 88260449 88260449 T C WAPAL Missense_Mutation p.H184R 0.19 deleterious_low_confidence(0.02) benign(0.009) TCGA-CA-6717-01 10 88635830 88635830 T G BMPR1A Missense_Mutation p.S19A 0.07 tolerated_low_confidence(0.5) benign(0) TCGA-CA-6717-01 10 88703120 88703120 G A MMRN2 Missense_Mutation p.T474M 0.11 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 10 88705161 88705161 G A MMRN2 Silent p.C122C 0.18 TCGA-CA-6717-01 10 88719821 88719821 C G SNCG Missense_Mutation p.T76S 0.07 tolerated(0.2) benign(0.329) TCGA-CA-6717-01 10 88768132 88768132 G A RP11-96C23.10 3'Flank 0.13 TCGA-CA-6717-01 10 88769750 88769750 A G RP11-96C23.10 Intron 0.10 TCGA-CA-6717-01 10 89272976 89272976 A C MINPP1 Missense_Mutation p.K311Q 0.09 tolerated(0.4) benign(0.062) TCGA-CA-6717-01 10 90490892 90490892 A G LIPK Missense_Mutation p.K126E 0.14 deleterious(0.02) possibly_damaging(0.483) TCGA-CA-6717-01 10 90530732 90530732 A T LIPN Missense_Mutation p.K268M 0.11 tolerated(0.11) benign(0.046) TCGA-CA-6717-01 10 90562694 90562694 G T LIPM Missense_Mutation p.R14I 0.16 deleterious(0) probably_damaging(0.943) TCGA-CA-6717-01 10 90701610 90701610 A G ACTA2 Missense_Mutation p.F129S 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-CA-6717-01 10 90768651 90768651 G A FAS Missense_Mutation p.E114K 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 90983569 90983569 C A LIPA Nonsense_Mutation p.E232* 0.21 TCGA-CA-6717-01 10 91065912 91065912 A C IFIT2 Missense_Mutation p.N67H 0.22 tolerated(0.14) benign(0.075) TCGA-CA-6717-01 10 91143603 91143603 A G IFIT1B Missense_Mutation p.N178S 0.12 tolerated(0.49) benign(0.019) TCGA-CA-6717-01 10 91144177 91144177 G T IFIT1B Missense_Mutation p.M369I 0.42 tolerated(0.36) benign(0.023) TCGA-CA-6717-01 10 91144248 91144248 A C IFIT1B Missense_Mutation p.K393T 0.21 deleterious(0) possibly_damaging(0.873) TCGA-CA-6717-01 10 91144529 91144529 A G IFIT1B 3'UTR 0.19 TCGA-CA-6717-01 10 91178298 91178298 G T IFIT5 Nonsense_Mutation p.E448* 0.08 TCGA-CA-6717-01 10 91371764 91371764 T C PANK1 Missense_Mutation p.K249E 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 91474901 91474901 G A KIF20B Missense_Mutation p.R301H 0.27 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 10 91488915 91488915 G T KIF20B Nonsense_Mutation p.E728* 0.11 TCGA-CA-6717-01 10 91488958 91488958 A C KIF20B Missense_Mutation p.E742A 0.14 tolerated(0.21) benign(0) TCGA-CA-6717-01 10 92654579 92654579 C A RPP30 Silent p.I160I 0.23 TCGA-CA-6717-01 10 92672534 92672534 A G ANKRD1 3'UTR 0.16 TCGA-CA-6717-01 10 92675612 92675612 G A ANKRD1 Missense_Mutation p.A226V 0.12 deleterious(0.01) possibly_damaging(0.877) TCGA-CA-6717-01 10 92680078 92680078 C T ANKRD1 Missense_Mutation p.E19K 0.09 deleterious(0.05) benign(0.003) TCGA-CA-6717-01 10 93021144 93021144 T G PCGF5 Missense_Mutation p.F179C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 93031399 93031399 G A PCGF5 Missense_Mutation p.R223Q 0.15 tolerated(0.33) benign(0.001) TCGA-CA-6717-01 10 93038067 93038067 C T PCGF5 Silent p.F255F 0.11 TCGA-CA-6717-01 10 93221093 93221093 G T HECTD2 Nonsense_Mutation p.E164* 0.11 TCGA-CA-6717-01 10 93244220 93244220 G T HECTD2 Intron 0.22 TCGA-CA-6717-01 10 93247463 93247463 C T HECTD2 Silent p.F373F 0.18 TCGA-CA-6717-01 10 93389723 93389723 C A PPP1R3C Missense_Mutation p.Q305H 0.14 deleterious(0.03) benign(0.03) TCGA-CA-6717-01 10 93390444 93390444 T G PPP1R3C Missense_Mutation p.K65T 0.23 tolerated(0.16) possibly_damaging(0.549) TCGA-CA-6717-01 10 93593689 93593689 T G TNKS2 Missense_Mutation p.L452R 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 93615386 93615386 C T TNKS2 Nonsense_Mutation p.R977* 0.19 TCGA-CA-6717-01 10 93711258 93711258 G T BTAF1 Nonsense_Mutation p.E167* 0.17 TCGA-CA-6717-01 10 93999102 93999102 C A CPEB3 Splice_Site p.X335_splice 0.17 TCGA-CA-6717-01 10 93999746 93999746 T C CPEB3 Missense_Mutation p.D121G 0.09 tolerated(0.2) benign(0.007) TCGA-CA-6717-01 10 93999999 93999999 A G CPEB3 Missense_Mutation p.S37P 0.15 tolerated_low_confidence(0.1) benign(0.009) TCGA-CA-6717-01 10 94100536 94100536 T G MARCH5 Silent p.T115T 0.08 TCGA-CA-6717-01 10 94390005 94390005 G T KIF11 Nonsense_Mutation p.E460* 0.19 TCGA-CA-6717-01 10 94450059 94450059 A C HHEX Missense_Mutation p.T106P 0.25 tolerated(0.18) benign(0.001) TCGA-CA-6717-01 10 94454463 94454463 T C HHEX Missense_Mutation p.S251P 0.11 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 10 94675561 94675561 A C EXOC6 Missense_Mutation p.K237T 0.09 tolerated(0.14) benign(0.001) TCGA-CA-6717-01 10 94834785 94834785 T G CYP26A1 Missense_Mutation p.F222V 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 94834926 94834926 C A CYP26A1 Silent p.L242L 0.16 TCGA-CA-6717-01 10 95116535 95116535 T C MYOF Missense_Mutation p.K1064R 0.09 tolerated(0.05) benign(0.06) TCGA-CA-6717-01 10 95119636 95119636 C T MYOF Missense_Mutation p.R1025Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 95276809 95276809 G A CEP55 Missense_Mutation p.R266Q 0.18 tolerated(0.76) benign(0.003) TCGA-CA-6717-01 10 95347338 95347338 G T FFAR4 Missense_Mutation p.R369I 0.19 deleterious(0) possibly_damaging(0.775) TCGA-CA-6717-01 10 95552507 95552507 A G LGI1 Missense_Mutation p.R171G 0.07 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 10 95719910 95719910 G T PIPSL RNA 0.22 TCGA-CA-6717-01 10 95791135 95791135 G T PLCE1 Missense_Mutation p.R111I 0.23 deleterious_low_confidence(0.01) benign(0.019) TCGA-CA-6717-01 10 95791720 95791720 A G PLCE1 Missense_Mutation p.N306S 0.11 tolerated_low_confidence(0.08) benign(0.004) TCGA-CA-6717-01 10 96058275 96058275 T C PLCE1 Silent p.C1769C 0.21 TCGA-CA-6717-01 10 96068399 96068399 C A PLCE1 Missense_Mutation p.F1982L 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 10 96094438 96094438 C T NOC3L Missense_Mutation p.E743K 0.24 tolerated(0.64) benign(0.147) TCGA-CA-6717-01 10 96350230 96350230 A C HELLS Missense_Mutation p.N517H 0.13 deleterious(0.01) benign(0.061) TCGA-CA-6717-01 10 96493119 96493119 G A CYP2C18 Silent p.E405E 0.09 TCGA-CA-6717-01 10 96534839 96534839 T C CYP2C19 Missense_Mutation p.F65L 0.27 deleterious(0) possibly_damaging(0.594) TCGA-CA-6717-01 10 96534960 96534960 G T CYP2C19 Missense_Mutation p.R105I 0.21 deleterious(0.01) benign(0.214) TCGA-CA-6717-01 10 96612593 96612593 G A CYP2C19 Silent p.K465K 0.14 TCGA-CA-6717-01 10 96798780 96798780 C T CYP2C8 Missense_Mutation p.A389T 0.14 tolerated(0.69) benign(0.001) TCGA-CA-6717-01 10 96818258 96818258 T G CYP2C8 Missense_Mutation p.N218T 0.12 tolerated(0.4) benign(0.005) TCGA-CA-6717-01 10 96824604 96824604 T C CYP2C8 Missense_Mutation p.K199E 0.15 tolerated(1) benign(0.001) TCGA-CA-6717-01 10 96954305 96954305 C A C10orf129 Nonsense_Mutation p.C21* 0.17 TCGA-CA-6717-01 10 97096447 97096447 A T SORBS1 Missense_Mutation p.V1157D 0.11 tolerated_low_confidence(0.26) possibly_damaging(0.878) TCGA-CA-6717-01 10 97373508 97373508 T G ALDH18A1 Missense_Mutation p.R638S 0.11 deleterious(0.05) probably_damaging(0.995) TCGA-CA-6717-01 10 97626102 97626102 T G ENTPD1 Missense_Mutation p.F511V 0.09 tolerated(0.06) possibly_damaging(0.476) TCGA-CA-6717-01 10 97697941 97697941 C A C10orf131 Missense_Mutation p.S169Y 0.16 deleterious(0) probably_damaging(0.919) TCGA-CA-6717-01 10 97779520 97779520 A T CC2D2B Missense_Mutation p.E240V 0.11 tolerated(0.08) probably_damaging(0.977) TCGA-CA-6717-01 10 97779652 97779652 G A CC2D2B Intron 0.23 TCGA-CA-6717-01 10 97917667 97917667 G T ZNF518A RNA 0.08 TCGA-CA-6717-01 10 97919915 97919915 G A ZNF518A RNA 0.29 TCGA-CA-6717-01 10 97921699 97921699 T G ZNF518A RNA 0.20 TCGA-CA-6717-01 10 97922498 97922498 A G ZNF518A RNA 0.10 TCGA-CA-6717-01 10 98180808 98180808 A G TLL2 Silent p.Y276Y 0.10 TCGA-CA-6717-01 10 98287048 98287048 T G TM9SF3 Splice_Site p.X542_splice 0.08 TCGA-CA-6717-01 10 98408569 98408569 C T PIK3AP1 Silent p.A344A 0.19 TCGA-CA-6717-01 10 98715571 98715571 G A LCOR Silent p.K398K 0.10 TCGA-CA-6717-01 10 98741244 98741244 T G C10orf12 Missense_Mutation p.L33V 0.11 deleterious(0.01) benign(0.041) TCGA-CA-6717-01 10 98766312 98766312 G T SLIT1 Missense_Mutation p.N1169K 0.13 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 10 98766329 98766329 T C SLIT1 Missense_Mutation p.K1164E 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-CA-6717-01 10 99019236 99019236 T G ARHGAP19 Missense_Mutation p.K255Q 0.08 tolerated(0.14) possibly_damaging(0.77) TCGA-CA-6717-01 10 99130272 99130272 C T RRP12 Missense_Mutation p.A877T 0.21 deleterious(0) probably_damaging(0.95) TCGA-CA-6717-01 10 99221775 99221775 T C MMS19 Missense_Mutation p.Q705R 0.11 tolerated(0.05) benign(0.003) TCGA-CA-6717-01 10 99338074 99338074 C A ANKRD2 Silent p.I116I 0.10 TCGA-CA-6717-01 10 99350251 99350251 C A C10orf62 Missense_Mutation p.F199L 0.24 tolerated(0.16) possibly_damaging(0.682) TCGA-CA-6717-01 10 99410870 99410870 T C PI4K2A Missense_Mutation p.L173P 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 10 99968077 99968077 G A R3HCC1L Missense_Mutation p.R69Q 0.17 tolerated(1) benign(0.001) TCGA-CA-6717-01 11 10052671 10052671 A C SBF2 Nonsense_Mutation p.L109* 0.25 TCGA-CA-6717-01 11 100558522 100558522 A G ARHGAP42 Missense_Mutation p.E38G 0.29 deleterious(0.03) benign(0.342) TCGA-CA-6717-01 11 100814533 100814533 C A ARHGAP42 Missense_Mutation p.S326Y 0.11 tolerated(0.27) possibly_damaging(0.8) TCGA-CA-6717-01 11 100863738 100863738 G T TMEM133 3'UTR 0.07 TCGA-CA-6717-01 11 100864114 100864114 T G TMEM133 3'UTR 0.13 TCGA-CA-6717-01 11 100912715 100912715 A G PGR Silent p.R869R 0.14 TCGA-CA-6717-01 11 100922242 100922242 C A PGR Missense_Mutation p.S757I 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6717-01 11 100922293 100922293 C T PGR Missense_Mutation p.R740Q 0.24 deleterious(0.01) probably_damaging(0.952) TCGA-CA-6717-01 11 101323658 101323658 A C TRPC6 3'UTR 0.19 TCGA-CA-6717-01 11 101323738 101323738 T G TRPC6 Missense_Mutation p.E915A 0.22 tolerated(0.1) benign(0.013) TCGA-CA-6717-01 11 101359692 101359692 A C TRPC6 Missense_Mutation p.I423M 0.17 tolerated(0.22) benign(0.121) TCGA-CA-6717-01 11 101362429 101362429 A C TRPC6 Missense_Mutation p.V329G 0.11 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 11 101374811 101374811 C T TRPC6 Missense_Mutation p.A297T 0.09 deleterious(0) possibly_damaging(0.893) TCGA-CA-6717-01 11 101777842 101777842 A C ANGPTL5 Missense_Mutation p.F78C 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.606) TCGA-CA-6717-01 11 101778662 101778662 A G ANGPTL5 5'UTR 0.14 TCGA-CA-6717-01 11 102221396 102221396 G A BIRC2 Missense_Mutation p.A271T 0.21 tolerated(0.09) benign(0.046) TCGA-CA-6717-01 11 102583989 102583989 A C MMP8 3'UTR 0.18 TCGA-CA-6717-01 11 102643599 102643599 A C MMP10 Missense_Mutation p.F402C 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 102647381 102647381 A C MMP10 Missense_Mutation p.L250R 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 102661037 102661037 T C MMP1 3'UTR 0.28 TCGA-CA-6717-01 11 102662113 102662113 C T MMP1 Missense_Mutation p.E383K 0.12 deleterious(0.04) possibly_damaging(0.717) TCGA-CA-6717-01 11 102663372 102663372 C T MMP1 Missense_Mutation p.E333K 0.16 deleterious(0) probably_damaging(0.962) TCGA-CA-6717-01 11 102668102 102668102 G A MMP1 Missense_Mutation p.P79S 0.10 tolerated(0.1) benign(0.015) TCGA-CA-6717-01 11 1027001 1027001 C A MUC6 Missense_Mutation p.E778D 0.17 unknown(0) TCGA-CA-6717-01 11 102711281 102711281 G A MMP3 Silent p.S223S 0.11 TCGA-CA-6717-01 11 102826011 102826011 A C MMP13 Missense_Mutation p.L111R 0.29 tolerated(0.05) possibly_damaging(0.801) TCGA-CA-6717-01 11 102986001 102986001 G T DYNC2H1 Nonsense_Mutation p.E200* 0.18 TCGA-CA-6717-01 11 103041621 103041621 G A DYNC2H1 Missense_Mutation p.D1720N 0.10 probably_damaging(1) TCGA-CA-6717-01 11 103048413 103048413 A G DYNC2H1 Silent p.K2001K 0.07 TCGA-CA-6717-01 11 103070201 103070201 A G DYNC2H1 Missense_Mutation p.K2695R 0.10 possibly_damaging(0.722) TCGA-CA-6717-01 11 103086502 103086502 G T DYNC2H1 Missense_Mutation p.R2916I 0.29 benign(0.098) TCGA-CA-6717-01 11 103102071 103102071 G T DYNC2H1 Nonsense_Mutation p.E3146* 0.10 TCGA-CA-6717-01 11 103780388 103780388 C A PDGFD 3'UTR 0.26 TCGA-CA-6717-01 11 103870795 103870795 C A PDGFD Nonsense_Mutation p.E105* 0.13 TCGA-CA-6717-01 11 103908401 103908401 G A DDI1 Missense_Mutation p.R284Q 0.09 tolerated(0.15) benign(0.025) TCGA-CA-6717-01 11 103908728 103908728 G A DDI1 Missense_Mutation p.R393Q 0.21 tolerated_low_confidence(0.16) benign(0.003) TCGA-CA-6717-01 11 103909865 103909865 G A DDI1 3'UTR 0.09 TCGA-CA-6717-01 11 104815562 104815562 T G CASP4 Missense_Mutation p.E351A 0.14 deleterious(0) possibly_damaging(0.892) TCGA-CA-6717-01 11 104819279 104819279 A C CASP4 Silent p.A302A 0.11 TCGA-CA-6717-01 11 104820375 104820375 G T CASP4 Missense_Mutation p.P226T 0.07 deleterious(0.02) probably_damaging(0.942) TCGA-CA-6717-01 11 104899968 104899968 C A CASP1 Missense_Mutation p.D297Y 0.08 deleterious(0.01) possibly_damaging(0.862) TCGA-CA-6717-01 11 10500072 10500072 G T AMPD3 Splice_Site p.X83_splice 0.11 TCGA-CA-6717-01 11 10503644 10503644 G A AMPD3 Missense_Mutation p.S163N 0.11 tolerated(0.32) benign(0.004) TCGA-CA-6717-01 11 10546877 10546877 T G RNF141 Missense_Mutation p.N99T 0.23 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 11 10580562 10580562 C A LYVE1 3'UTR 0.31 TCGA-CA-6717-01 11 105924317 105924317 G T KBTBD3 Missense_Mutation p.H367N 0.12 tolerated(0.1) probably_damaging(0.992) TCGA-CA-6717-01 11 105924837 105924837 C T KBTBD3 Missense_Mutation p.M193I 0.14 tolerated(0.11) benign(0.001) TCGA-CA-6717-01 11 105929623 105929623 A G KBTBD3 Missense_Mutation p.C68R 0.08 tolerated(0.06) probably_damaging(0.994) TCGA-CA-6717-01 11 10615758 10615758 G A MRVI1 Intron 0.18 TCGA-CA-6717-01 11 106558342 106558342 G T GUCY1A2 Missense_Mutation p.S742Y 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.865) TCGA-CA-6717-01 11 106849458 106849458 T G GUCY1A2 Missense_Mutation p.D125A 0.27 tolerated(0.11) benign(0.039) TCGA-CA-6717-01 11 107325241 107325241 C A CWF19L2 Nonsense_Mutation p.E92* 0.18 TCGA-CA-6717-01 11 107375690 107375690 A C ALKBH8 Silent p.S563S 0.08 TCGA-CA-6717-01 11 107427508 107427508 C A ALKBH8 Missense_Mutation p.L117F 0.10 tolerated(0.09) benign(0.095) TCGA-CA-6717-01 11 10789919 10789919 C T CTR9 Missense_Mutation p.R664C 0.20 deleterious(0.03) probably_damaging(0.985) TCGA-CA-6717-01 11 107917076 107917076 T C CUL5 Missense_Mutation p.F72L 0.10 tolerated(0.06) possibly_damaging(0.509) TCGA-CA-6717-01 11 107925500 107925500 T C CUL5 Missense_Mutation p.V227A 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 108010835 108010835 G A ACAT1 Missense_Mutation p.R208Q 0.10 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 11 108032880 108032880 G A NPAT Missense_Mutation p.S1013L 0.10 tolerated(0.11) benign(0.021) TCGA-CA-6717-01 11 108056142 108056142 T G NPAT Missense_Mutation p.K269T 0.23 deleterious(0) possibly_damaging(0.897) TCGA-CA-6717-01 11 108099998 108099998 G T ATM Missense_Mutation p.K93N 0.09 deleterious(0.02) probably_damaging(0.978) TCGA-CA-6717-01 11 108100031 108100031 C A ATM Missense_Mutation p.F104L 0.17 deleterious(0.02) benign(0.232) TCGA-CA-6717-01 11 108115600 108115600 C T ATM Nonsense_Mutation p.R250* 0.23 TCGA-CA-6717-01 11 108123575 108123575 C A ATM Missense_Mutation p.L612I 0.10 tolerated(0.07) probably_damaging(0.912) TCGA-CA-6717-01 11 108165729 108165729 C T ATM Nonsense_Mutation p.R1618* 0.09 TCGA-CA-6717-01 11 108256646 108256646 C T C11orf65 Splice_Site p.X263_splice 0.16 TCGA-CA-6717-01 11 108302539 108302539 T G C11orf65 Missense_Mutation p.K36N 0.22 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 11 108345649 108345649 C T KDELC2 Missense_Mutation p.E477K 0.11 tolerated(0.96) benign(0.013) TCGA-CA-6717-01 11 108382116 108382116 T C EXPH5 Missense_Mutation p.K1373R 0.09 deleterious(0.01) possibly_damaging(0.462) TCGA-CA-6717-01 11 108383941 108383941 T G EXPH5 Missense_Mutation p.S765R 0.17 tolerated(0.21) probably_damaging(0.972) TCGA-CA-6717-01 11 108385337 108385337 C T EXPH5 Silent p.R299R 0.23 TCGA-CA-6717-01 11 108544197 108544197 A C DDX10 Missense_Mutation p.N64H 0.10 deleterious(0) probably_damaging(0.975) TCGA-CA-6717-01 11 10874354 10874354 C A ZBED5 3'UTR 0.15 TCGA-CA-6717-01 11 109294977 109294977 G A C11orf87 3'UTR 0.23 TCGA-CA-6717-01 11 109295520 109295520 A C C11orf87 3'UTR 0.18 TCGA-CA-6717-01 11 110008112 110008112 T C ZC3H12C Missense_Mutation p.V249A 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 11 110008127 110008127 A G ZC3H12C Missense_Mutation p.N254S 0.25 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 11 110104183 110104183 A C RDX Missense_Mutation p.L456V 0.10 tolerated(0.09) probably_damaging(1) TCGA-CA-6717-01 11 110124758 110124758 T C RDX Missense_Mutation p.Y291C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 110134782 110134782 G T RDX Missense_Mutation p.L124I 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 110450406 110450406 C A ARHGAP20 Missense_Mutation p.E1088D 0.21 tolerated_low_confidence(0.11) benign(0.012) TCGA-CA-6717-01 11 110451278 110451278 G A ARHGAP20 Missense_Mutation p.P798S 0.21 tolerated(0.05) benign(0.139) TCGA-CA-6717-01 11 111154861 111154861 T C C11orf53 Missense_Mutation p.F23S 0.11 deleterious(0.03) probably_damaging(0.929) TCGA-CA-6717-01 11 111168023 111168023 G T COLCA1 5'UTR 0.15 TCGA-CA-6717-01 11 111168416 111168416 C T COLCA1 5'UTR 0.15 TCGA-CA-6717-01 11 111228278 111228278 G A POU2AF1 Silent p.C116C 0.16 TCGA-CA-6717-01 11 111368098 111368098 A G BTG4 Silent p.S116S 0.14 TCGA-CA-6717-01 11 111405336 111405336 T G C11orf88 Intron 0.17 TCGA-CA-6717-01 11 111426005 111426005 A C LAYN Missense_Mutation p.K224N 0.08 tolerated(0.31) benign(0.013) TCGA-CA-6717-01 11 111612222 111612222 C A PPP2R1B Intron 0.16 TCGA-CA-6717-01 11 111745739 111745739 G T FDXACB1 Silent p.T594T 0.10 TCGA-CA-6717-01 11 111779505 111779505 C T CRYAB Missense_Mutation p.A171T 0.23 tolerated(0.12) benign(0.026) TCGA-CA-6717-01 11 111808247 111808247 G A DIXDC1 Silent p.G8G 0.10 TCGA-CA-6717-01 11 111941988 111941988 A G PIH1D2 Silent p.D107D 0.10 TCGA-CA-6717-01 11 111953255 111953255 A C C11orf57 Missense_Mutation p.E147D 0.23 tolerated(0.09) probably_damaging(0.995) TCGA-CA-6717-01 11 111953320 111953320 A T C11orf57 Missense_Mutation p.K169I 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CA-6717-01 11 111958593 111958593 G A SDHD Missense_Mutation p.R22Q 0.22 tolerated(0.63) benign(0.002) TCGA-CA-6717-01 11 112064319 112064319 G T BCO2 Missense_Mutation p.R139L 0.27 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 11 112070544 112070544 A C BCO2 Missense_Mutation p.S287R 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 113270101 113270101 G T ANKK1 Missense_Mutation p.Q470H 0.25 deleterious(0.02) probably_damaging(0.995) TCGA-CA-6717-01 11 113283399 113283399 C A DRD2 Missense_Mutation p.K339N 0.19 tolerated(0.13) benign(0.039) TCGA-CA-6717-01 11 113661000 113661000 G A ATF4P4 RNA 0.13 TCGA-CA-6717-01 11 113661635 113661635 T C ATF4P4 RNA 0.11 TCGA-CA-6717-01 11 113674518 113674518 A G USP28 Splice_Site p.X913_splice 0.12 TCGA-CA-6717-01 11 113775616 113775616 A C HTR3B 5'UTR 0.21 TCGA-CA-6717-01 11 114262245 114262245 T G C11orf71 3'UTR 0.12 TCGA-CA-6717-01 11 114273576 114273576 A G RBM7 Missense_Mutation p.S96G 0.08 tolerated(0.21) benign(0.001) TCGA-CA-6717-01 11 114568943 114568943 G T NXPE2 Silent p.V103V 0.08 TCGA-CA-6717-01 11 1162357 1162357 G T MUC5AC Missense_Mutation p.E622D 0.09 tolerated(0.15) benign(0.225) TCGA-CA-6717-01 11 116660981 116660981 T G APOA5 Missense_Mutation p.S322R 0.12 tolerated(0.11) benign(0.011) TCGA-CA-6717-01 11 116797997 116797997 A C SIK3 Missense_Mutation p.V127G 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 117056931 117056931 G A SIDT2 Silent p.E318E 0.11 TCGA-CA-6717-01 11 117214883 117214883 A C CEP164 Missense_Mutation p.E28D 0.13 deleterious(0.05) possibly_damaging(0.674) TCGA-CA-6717-01 11 117301616 117301616 G T DSCAML1 Silent p.I1896I 0.13 TCGA-CA-6717-01 11 117651301 117651301 C T DSCAML1 Missense_Mutation p.A151T 0.11 tolerated(0.18) possibly_damaging(0.742) TCGA-CA-6717-01 11 117774764 117774764 C A TMPRSS13 Missense_Mutation p.K478N 0.11 tolerated(0.13) benign(0.005) TCGA-CA-6717-01 11 117869437 117869437 A G IL10RA Missense_Mutation p.K273R 0.15 tolerated(0.39) benign(0.01) TCGA-CA-6717-01 11 118014557 118014557 C T SCN4B Missense_Mutation p.V152I 0.12 deleterious(0.01) benign(0.095) TCGA-CA-6717-01 11 118015862 118015862 C A SCN4B Missense_Mutation p.E48D 0.16 tolerated(0.89) benign(0.007) TCGA-CA-6717-01 11 118037610 118037610 C T SCN2B Missense_Mutation p.A214T 0.25 tolerated_low_confidence(1) benign(0) TCGA-CA-6717-01 11 118074352 118074352 T G AMICA1 Missense_Mutation p.K188T 0.24 tolerated(0.14) benign(0.338) TCGA-CA-6717-01 11 118182875 118182875 T C CD3E Silent p.I31I 0.08 TCGA-CA-6717-01 11 118210569 118210569 G T CD3D Silent p.V109V 0.22 TCGA-CA-6717-01 11 118220490 118220490 G T CD3G Nonsense_Mutation p.E38* 0.11 TCGA-CA-6717-01 11 118252105 118252105 G A UBE4A Splice_Site p.X633_splice 0.12 TCGA-CA-6717-01 11 118506118 118506118 A G PHLDB1 Missense_Mutation p.E796G 0.11 deleterious(0.01) benign(0.004) TCGA-CA-6717-01 11 118851219 118851219 C T FOXR1 Missense_Mutation p.R211W 0.25 tolerated(0.26) probably_damaging(0.994) TCGA-CA-6717-01 11 118886022 118886022 A C CCDC84 Missense_Mutation p.K271Q 0.20 tolerated(0.35) possibly_damaging(0.736) TCGA-CA-6717-01 11 118918711 118918711 C T HYOU1 Missense_Mutation p.E820K 0.21 tolerated(0.12) benign(0.043) TCGA-CA-6717-01 11 118920501 118920501 A C HYOU1 Missense_Mutation p.S572A 0.13 deleterious(0.01) probably_damaging(0.951) TCGA-CA-6717-01 11 118921765 118921765 G A HYOU1 Silent p.G549G 0.22 TCGA-CA-6717-01 11 118940047 118940047 A G VPS11 Missense_Mutation p.N109S 0.16 tolerated(0.07) benign(0.085) TCGA-CA-6717-01 11 119058747 119058747 A G PDZD3 Silent p.A252A 0.17 TCGA-CA-6717-01 11 119180592 119180592 G A MCAM 3'UTR 0.17 TCGA-CA-6717-01 11 11919204 11919204 T G USP47 Missense_Mutation p.L118R 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 119214562 119214562 T G MFRP Missense_Mutation p.E363A 0.20 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 11 119229958 119229958 C T USP2 Silent p.P348P 0.10 TCGA-CA-6717-01 11 119548372 119548372 C G PVRL1 Missense_Mutation p.S209T 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-CA-6717-01 11 11977678 11977678 A G USP47 Missense_Mutation p.I1274V 0.10 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 11 120008373 120008373 C T TRIM29 Missense_Mutation p.E123K 0.30 deleterious(0.01) benign(0.154) TCGA-CA-6717-01 11 120852910 120852910 C T GRIK4 Missense_Mutation p.L831F 0.15 tolerated(0.26) benign(0.307) TCGA-CA-6717-01 11 120930717 120930717 T A TBCEL Silent p.T293T 0.19 TCGA-CA-6717-01 11 120989026 120989026 C T TECTA Missense_Mutation p.R268W 0.27 deleterious(0) possibly_damaging(0.776) TCGA-CA-6717-01 11 121032894 121032894 A G TECTA Missense_Mutation p.D1696G 0.12 deleterious(0.04) benign(0.14) TCGA-CA-6717-01 11 121177854 121177854 T G SC5D Missense_Mutation p.L178R 0.16 deleterious(0) probably_damaging(0.953) TCGA-CA-6717-01 11 121391559 121391559 G A SORL1 Splice_Site p.X468_splice 0.12 TCGA-CA-6717-01 11 121403254 121403254 G A SORL1 Missense_Mutation p.E560K 0.18 tolerated(0.07) benign(0.047) TCGA-CA-6717-01 11 121426000 121426000 G A SORL1 Nonsense_Mutation p.W848* 0.08 TCGA-CA-6717-01 11 121478836 121478836 A G SORL1 Silent p.G1730G 0.11 TCGA-CA-6717-01 11 121489565 121489565 C T SORL1 Missense_Mutation p.T1896M 0.09 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6717-01 11 122722430 122722430 C A CRTAM Missense_Mutation p.H75N 0.10 tolerated(0.09) benign(0.023) TCGA-CA-6717-01 11 12280021 12280021 T G MICAL2 Missense_Mutation p.F1050C 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 122929045 122929045 T G HSPA8 Missense_Mutation p.K557T 0.30 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-CA-6717-01 11 122930449 122930449 G A HSPA8 Silent p.I284I 0.23 TCGA-CA-6717-01 11 122945443 122945443 C A CLMP Missense_Mutation p.R263I 0.14 deleterious(0) probably_damaging(0.953) TCGA-CA-6717-01 11 123474185 123474185 G A GRAMD1B Missense_Mutation p.E225K 0.11 deleterious(0) benign(0.347) TCGA-CA-6717-01 11 123508917 123508917 G A SCN3B Silent p.A187A 0.13 TCGA-CA-6717-01 11 123596863 123596863 C T ZNF202 Missense_Mutation p.E597K 0.24 tolerated(0.31) possibly_damaging(0.786) TCGA-CA-6717-01 11 123676757 123676757 A G OR6M1 Missense_Mutation p.F101L 0.09 tolerated(0.18) benign(0.275) TCGA-CA-6717-01 11 123755275 123755275 G A TMEM225 Silent p.L84L 0.09 TCGA-CA-6717-01 11 123777407 123777407 G T OR8D4 Missense_Mutation p.R90I 0.15 deleterious(0) benign(0.07) TCGA-CA-6717-01 11 123894183 123894183 C T OR10G9 Missense_Mutation p.S155F 0.08 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 11 123900774 123900774 C T OR10G8 Missense_Mutation p.L149F 0.09 tolerated(0.23) benign(0.248) TCGA-CA-6717-01 11 124481572 124481572 C T PANX3 Silent p.F40F 0.12 TCGA-CA-6717-01 11 124489737 124489737 T C PANX3 Missense_Mutation p.I362T 0.08 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 11 124494860 124494860 C A TBRG1 Missense_Mutation p.L62I 0.08 tolerated(0.17) benign(0.288) TCGA-CA-6717-01 11 124508484 124508484 T C SIAE Missense_Mutation p.Y425C 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 11 124519689 124519689 T G SIAE Missense_Mutation p.N183T 0.11 tolerated(0.37) benign(0.241) TCGA-CA-6717-01 11 124744687 124744687 G T ROBO3 Missense_Mutation p.S652I 0.19 tolerated(0.29) benign(0.432) TCGA-CA-6717-01 11 124745107 124745107 G A ROBO3 Missense_Mutation p.S725N 0.17 tolerated(0.14) benign(0.009) TCGA-CA-6717-01 11 124754744 124754744 G T ROBO4 3'UTR 0.31 TCGA-CA-6717-01 11 124794632 124794632 G T HEPACAM Missense_Mutation p.T140N 0.25 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 11 124794736 124794736 G T HEPACAM Silent p.G105G 0.14 TCGA-CA-6717-01 11 124857553 124857553 G T CCDC15 Missense_Mutation p.Q477H 0.16 tolerated(0.08) benign(0.168) TCGA-CA-6717-01 11 124861411 124861411 G T CCDC15 Missense_Mutation p.D655Y 0.14 deleterious(0.01) possibly_damaging(0.751) TCGA-CA-6717-01 11 124953755 124953755 G A SLC37A2 Missense_Mutation p.D341N 0.25 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 11 124956278 124956278 G T SLC37A2 Intron 0.21 TCGA-CA-6717-01 11 124958022 124958022 G A SLC37A2 3'UTR 0.19 TCGA-CA-6717-01 11 125359699 125359699 G A FEZ1 5'UTR 0.26 TCGA-CA-6717-01 11 125525174 125525174 G T CHEK1 Missense_Mutation p.D464Y 0.18 deleterious(0) probably_damaging(0.968) TCGA-CA-6717-01 11 125618595 125618595 C T PATE1 Silent p.C116C 0.09 TCGA-CA-6717-01 11 125765907 125765907 C A PUS3 Missense_Mutation p.E91D 0.11 tolerated(0.28) benign(0.413) TCGA-CA-6717-01 11 125766078 125766078 T G PUS3 Missense_Mutation p.K34N 0.11 tolerated(0.53) benign(0.001) TCGA-CA-6717-01 11 125769339 125769339 G T HYLS1 Missense_Mutation p.A26S 0.10 tolerated(0.1) possibly_damaging(0.762) TCGA-CA-6717-01 11 125792787 125792787 T G DDX25 3'UTR 0.11 TCGA-CA-6717-01 11 125888224 125888224 C T CDON Splice_Site p.X214_splice 0.15 TCGA-CA-6717-01 11 128359187 128359187 T G ETS1 Missense_Mutation p.K178T 0.13 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 11 128993398 128993398 C T ARHGAP32 Silent p.P115P 0.23 TCGA-CA-6717-01 11 12923504 12923504 C T TEAD1 Silent p.F239F 0.10 TCGA-CA-6717-01 11 129321204 129321204 G A BARX2 Silent p.P249P 0.25 TCGA-CA-6717-01 11 129744713 129744713 A G NFRKB Silent p.H676H 0.16 TCGA-CA-6717-01 11 129775543 129775543 G A PRDM10 Missense_Mutation p.A1090V 0.24 deleterious_low_confidence(0.02) benign(0.266) TCGA-CA-6717-01 11 129780475 129780475 G T PRDM10 Missense_Mutation p.S1024Y 0.17 deleterious_low_confidence(0) benign(0.444) TCGA-CA-6717-01 11 129812430 129812430 A C PRDM10 Missense_Mutation p.F286C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 1298260 1298260 G A TOLLIP 3'UTR 0.08 TCGA-CA-6717-01 11 129827803 129827803 C T PRDM10 Silent p.V24V 0.21 TCGA-CA-6717-01 11 130289128 130289128 C T ADAMTS8 Silent p.K260K 0.12 TCGA-CA-6717-01 11 130785877 130785877 G T SNX19 5'UTR 0.29 TCGA-CA-6717-01 11 132184545 132184545 T G NTM Silent p.T294T 0.11 TCGA-CA-6717-01 11 13378633 13378633 A C ARNTL Missense_Mutation p.K71Q 0.12 tolerated(0.07) possibly_damaging(0.691) TCGA-CA-6717-01 11 134014190 134014190 A G JAM3 Missense_Mutation p.N104S 0.30 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 134054546 134054546 G A NCAPD3 Missense_Mutation p.P813S 0.19 tolerated(0.76) benign(0.006) TCGA-CA-6717-01 11 134073086 134073086 C T NCAPD3 Silent p.T492T 0.06 TCGA-CA-6717-01 11 134076604 134076604 T G NCAPD3 Missense_Mutation p.Q302H 0.21 tolerated(0.17) benign(0.003) TCGA-CA-6717-01 11 134080231 134080231 T G NCAPD3 Missense_Mutation p.K167T 0.11 tolerated(0.13) benign(0.013) TCGA-CA-6717-01 11 134131170 134131170 T G ACAD8 Silent p.A281A 0.11 TCGA-CA-6717-01 11 134183887 134183887 C A GLB1L3 Silent p.I544I 0.27 TCGA-CA-6717-01 11 13729525 13729525 C A FAR1 Missense_Mutation p.F148L 0.10 tolerated(0.72) benign(0.107) TCGA-CA-6717-01 11 14004429 14004429 G A SPON1 RNA 0.09 TCGA-CA-6717-01 11 14303203 14303203 C T RRAS2 Missense_Mutation p.A158T 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 14479380 14479380 G A COPB1 Missense_Mutation p.T951I 0.22 tolerated(0.09) benign(0.02) TCGA-CA-6717-01 11 14501200 14501200 G A COPB1 Missense_Mutation p.R425C 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 14502413 14502413 A G COPB1 Silent p.N368N 0.07 TCGA-CA-6717-01 11 14512226 14512226 C A COPB1 Splice_Site p.X164_splice 0.10 TCGA-CA-6717-01 11 14880658 14880658 T C PDE3B Missense_Mutation p.S864P 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 14913706 14913706 C T CYP2R1 Missense_Mutation p.G16S 0.10 tolerated(0.26) unknown(0) TCGA-CA-6717-01 11 1491532 1491532 T C MOB2 Missense_Mutation p.K226R 0.09 deleterious(0.03) probably_damaging(0.992) TCGA-CA-6717-01 11 15198707 15198707 G T INSC Missense_Mutation p.E198D 0.24 deleterious(0.02) benign(0.189) TCGA-CA-6717-01 11 15267602 15267602 A C INSC 3'UTR 0.10 TCGA-CA-6717-01 11 1605783 1605783 A G KRTAP5-1 Missense_Mutation p.S233P 0.09 tolerated_low_confidence(0.09) unknown(0) TCGA-CA-6717-01 11 16071272 16071272 C A SOX6 Intron 0.21 TCGA-CA-6717-01 11 16071313 16071313 C A SOX6 Nonsense_Mutation p.G475* 0.25 TCGA-CA-6717-01 11 1628918 1628918 C T KRTAP5-3 Missense_Mutation p.C233Y 0.15 deleterious(0) unknown(0) TCGA-CA-6717-01 11 16424211 16424211 T C SOX6 Intron 0.16 TCGA-CA-6717-01 11 1651977 1651977 T C KRTAP5-5 3'UTR 0.10 TCGA-CA-6717-01 11 17153536 17153536 G T PIK3C2A Missense_Mutation p.L720I 0.11 tolerated(0.15) probably_damaging(0.971) TCGA-CA-6717-01 11 1718718 1718718 C T KRTAP5-6 Silent p.G81G 0.26 TCGA-CA-6717-01 11 17416790 17416790 T G ABCC8 Missense_Mutation p.D1447A 0.15 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 11 17417455 17417455 C T ABCC8 Missense_Mutation p.G1381D 0.20 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 11 17426077 17426077 T C ABCC8 Missense_Mutation p.Y1180C 0.14 deleterious(0) possibly_damaging(0.496) TCGA-CA-6717-01 11 17741458 17741458 C T MYOD1 Silent p.F43F 0.19 TCGA-CA-6717-01 11 17793313 17793313 C T KCNC1 Silent p.I224I 0.22 TCGA-CA-6717-01 11 18042500 18042500 G A TPH1 3'UTR 0.14 TCGA-CA-6717-01 11 18108757 18108757 T C SAAL1 Silent p.E262E 0.30 TCGA-CA-6717-01 11 18261393 18261393 C T SAA4 5'Flank 0.16 TCGA-CA-6717-01 11 18485522 18485522 A G LDHAL6A Silent p.E47E 0.21 TCGA-CA-6717-01 11 18728543 18728543 G T IGSF22 Nonsense_Mutation p.Y1166* 0.18 TCGA-CA-6717-01 11 18731053 18731053 T C IGSF22 Missense_Mutation p.Y960C 0.11 deleterious(0) benign(0.275) TCGA-CA-6717-01 11 18759495 18759495 A C PTPN5 Missense_Mutation p.F311C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 18956223 18956223 C T MRGPRX1 Missense_Mutation p.V37I 0.10 tolerated(1) benign(0.001) TCGA-CA-6717-01 11 18956482 18956482 C A MRGPRX1 5'UTR 0.28 TCGA-CA-6717-01 11 19077135 19077135 C T MRGPRX2 Missense_Mutation p.S272N 0.15 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 11 19213932 19213932 C A CSRP3 Nonsense_Mutation p.E22* 0.09 TCGA-CA-6717-01 11 19251041 19251041 T C E2F8 Missense_Mutation p.K618R 0.10 tolerated(0.61) benign(0.318) TCGA-CA-6717-01 11 19735499 19735499 C T NAV2 Silent p.F86F 0.11 TCGA-CA-6717-01 11 198474 198474 G A ODF3 Silent p.A141A 0.14 TCGA-CA-6717-01 11 20122641 20122641 T C NAV2 Missense_Mutation p.Y2173H 0.10 tolerated(0.16) possibly_damaging(0.707) TCGA-CA-6717-01 11 20388936 20388936 A C HTATIP2 Intron 0.23 TCGA-CA-6717-01 11 20429457 20429457 G A PRMT3 Missense_Mutation p.V258I 0.15 benign(0.028) TCGA-CA-6717-01 11 20652239 20652239 A G SLC6A5 Missense_Mutation p.D501G 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 2161426 2161426 A C IGF2 Missense_Mutation p.I34R 0.12 deleterious_low_confidence(0) benign(0.282) TCGA-CA-6717-01 11 2169016 2169016 C A INS-IGF2 Missense_Mutation p.E143D 0.20 tolerated_low_confidence(0.13) benign(0.019) TCGA-CA-6717-01 11 22247572 22247572 C A ANO5 Missense_Mutation p.L113I 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-CA-6717-01 11 22257781 22257781 C A ANO5 Missense_Mutation p.L241I 0.22 tolerated(0.16) possibly_damaging(0.865) TCGA-CA-6717-01 11 22283834 22283834 G T ANO5 Missense_Mutation p.R597I 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 22301109 22301109 A C ANO5 Missense_Mutation p.K847T 0.08 tolerated(0.11) probably_damaging(1) TCGA-CA-6717-01 11 22360113 22360113 G T SLC17A6 Nonsense_Mutation p.G12* 0.08 TCGA-CA-6717-01 11 22646268 22646268 T G FANCF Missense_Mutation p.Q363H 0.14 tolerated_low_confidence(0.17) benign(0.03) TCGA-CA-6717-01 11 2291845 2291845 T G ASCL2 5'UTR 0.25 TCGA-CA-6717-01 11 239014 239014 A G PSMD13 Intron 0.08 TCGA-CA-6717-01 11 26353865 26353865 A C ANO3 Missense_Mutation p.K15Q 0.11 deleterious_low_confidence(0.05) benign(0.002) TCGA-CA-6717-01 11 26581247 26581247 C A MUC15 3'UTR 0.12 TCGA-CA-6717-01 11 27016871 27016871 T G FIBIN 3'UTR 0.08 TCGA-CA-6717-01 11 27018113 27018113 C A FIBIN 3'UTR 0.15 TCGA-CA-6717-01 11 27077169 27077169 T G BBOX1 Missense_Mutation p.I64M 0.10 tolerated(0.13) benign(0.039) TCGA-CA-6717-01 11 27379049 27379049 T C CCDC34 Silent p.K133K 0.09 TCGA-CA-6717-01 11 27390543 27390543 A C LGR4 Missense_Mutation p.F576C 0.23 deleterious(0) possibly_damaging(0.852) TCGA-CA-6717-01 11 27680077 27680077 T C BDNF Missense_Mutation p.Y94C 0.24 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 11 27680152 27680152 A T BDNF Intron 0.12 TCGA-CA-6717-01 11 28110115 28110115 G T KIF18A Missense_Mutation p.L285I 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 2909497 2909497 C T SLC22A18AS Silent p.A225A 0.36 TCGA-CA-6717-01 11 2972531 2972531 G A NAP1L4 Silent p.D360D 0.16 TCGA-CA-6717-01 11 299487 299487 C T IFITM5 Missense_Mutation p.D2N 0.22 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 11 30032389 30032389 C A KCNA4 Nonsense_Mutation p.E613* 0.23 TCGA-CA-6717-01 11 30032528 30032528 G T KCNA4 Missense_Mutation p.F566L 0.32 deleterious(0) possibly_damaging(0.857) TCGA-CA-6717-01 11 30033368 30033368 C A KCNA4 Missense_Mutation p.E286D 0.32 tolerated(0.19) benign(0.001) TCGA-CA-6717-01 11 30034751 30034751 G A KCNA4 5'UTR 0.27 TCGA-CA-6717-01 11 30354451 30354451 G A ARL14EP Silent p.T155T 0.28 TCGA-CA-6717-01 11 30925038 30925038 T C DCDC1 Missense_Mutation p.K1501E 0.08 tolerated(0.92) benign(0) TCGA-CA-6717-01 11 30942439 30942439 C T DCDC1 Silent p.K1059K 0.21 TCGA-CA-6717-01 11 3143651 3143651 T C OSBPL5 Missense_Mutation p.Y76C 0.14 tolerated(0.15) benign(0.021) TCGA-CA-6717-01 11 31541629 31541629 C A ELP4 Missense_Mutation p.L84I 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6717-01 11 31625382 31625382 T G ELP4 Missense_Mutation p.L194R 0.08 tolerated(0.07) probably_damaging(0.95) TCGA-CA-6717-01 11 31822388 31822388 C A PAX6 Missense_Mutation p.R139I 0.17 deleterious(0) possibly_damaging(0.778) TCGA-CA-6717-01 11 32461069 32461069 C A WT1 5'Flank 0.28 TCGA-CA-6717-01 11 32624324 32624324 A G EIF3M 3'UTR 0.10 TCGA-CA-6717-01 11 32636108 32636108 T C CCDC73 Missense_Mutation p.N586D 0.15 tolerated(0.13) benign(0.067) TCGA-CA-6717-01 11 32657370 32657370 C A CCDC73 Nonsense_Mutation p.E353* 0.16 TCGA-CA-6717-01 11 32724488 32724488 T G CCDC73 Missense_Mutation p.E70D 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 11 32858233 32858233 T G PRRG4 Missense_Mutation p.F45V 0.11 deleterious(0.04) benign(0.118) TCGA-CA-6717-01 11 32956068 32956068 T A QSER1 Silent p.T959T 0.11 TCGA-CA-6717-01 11 32956518 32956518 T G QSER1 Missense_Mutation p.I1109M 0.10 tolerated(0.3) benign(0.002) TCGA-CA-6717-01 11 32994982 32994982 C T QSER1 Nonsense_Mutation p.R1620* 0.08 TCGA-CA-6717-01 11 33118469 33118469 C A CSTF3 Missense_Mutation p.R395I 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 33118502 33118502 A C CSTF3 Missense_Mutation p.F384C 0.11 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 11 33163491 33163491 C A CSTF3 Missense_Mutation p.K23N 0.19 tolerated(0.13) benign(0.094) TCGA-CA-6717-01 11 33368861 33368861 A G HIPK3 Silent p.K640K 0.10 TCGA-CA-6717-01 11 33368880 33368880 A C HIPK3 Silent p.R647R 0.18 TCGA-CA-6717-01 11 33682559 33682559 C T KIAA1549L Missense_Mutation p.S1756L 0.14 deleterious(0) probably_damaging(0.923) TCGA-CA-6717-01 11 33763510 33763510 G A FBXO3 Missense_Mutation p.R454W 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-CA-6717-01 11 33790479 33790479 A C FBXO3 Missense_Mutation p.H92Q 0.10 tolerated(0.29) possibly_damaging(0.559) TCGA-CA-6717-01 11 3381640 3381640 C A ZNF195 Missense_Mutation p.D200Y 0.10 tolerated(0.15) probably_damaging(0.99) TCGA-CA-6717-01 11 34167703 34167703 G T NAT10 Missense_Mutation p.K1014N 0.09 tolerated(0.1) unknown(0) TCGA-CA-6717-01 11 34378258 34378258 C T ABTB2 Silent p.K291K 0.10 TCGA-CA-6717-01 11 34502506 34502506 T G ELF5 Missense_Mutation p.S172R 0.15 deleterious(0) probably_damaging(0.959) TCGA-CA-6717-01 11 34515086 34515086 C T ELF5 Missense_Mutation p.E109K 0.25 tolerated(0.72) benign(0.094) TCGA-CA-6717-01 11 34533090 34533090 C A ELF5 Splice_Site p.X9_splice 0.10 TCGA-CA-6717-01 11 35208383 35208383 A G CD44 Silent p.P124P 0.08 TCGA-CA-6717-01 11 35333783 35333783 G T SLC1A2 Missense_Mutation p.L175I 0.12 deleterious(0.04) possibly_damaging(0.585) TCGA-CA-6717-01 11 35641610 35641610 G A FJX1 3'UTR 0.18 TCGA-CA-6717-01 11 35685113 35685113 G A TRIM44 Missense_Mutation p.E152K 0.10 tolerated(0.27) unknown(0) TCGA-CA-6717-01 11 36600619 36600619 A C RAG1 3'UTR 0.09 TCGA-CA-6717-01 11 36669565 36669565 G T C11orf74 Splice_Site p.X120_splice 0.17 TCGA-CA-6717-01 11 3735142 3735142 T G NUP98 Missense_Mutation p.D828A 0.16 tolerated(0.39) benign(0.134) TCGA-CA-6717-01 11 4142936 4142936 G T RRM1 Missense_Mutation p.D327Y 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CA-6717-01 11 43423100 43423100 T C TTC17 Missense_Mutation p.Y442H 0.11 tolerated(0.08) benign(0.016) TCGA-CA-6717-01 11 43465702 43465702 C T TTC17 Missense_Mutation p.R870C 0.08 tolerated(0.08) possibly_damaging(0.54) TCGA-CA-6717-01 11 43472781 43472781 A C TTC17 Missense_Mutation p.Q999P 0.11 tolerated(0.05) probably_damaging(0.993) TCGA-CA-6717-01 11 43965250 43965250 T G C11orf96 3'Flank 0.21 TCGA-CA-6717-01 11 43965255 43965255 A C C11orf96 3'Flank 0.12 TCGA-CA-6717-01 11 44927982 44927982 T C TSPAN18 Silent p.C5C 0.07 TCGA-CA-6717-01 11 4566483 4566483 G A OR52M1 Silent p.G21G 0.13 TCGA-CA-6717-01 11 45671976 45671976 G A CHST1 Silent p.C166C 0.23 TCGA-CA-6717-01 11 4594609 4594609 G A C11orf40 Missense_Mutation p.P79S 0.15 tolerated_low_confidence(0.19) possibly_damaging(0.803) TCGA-CA-6717-01 11 45948061 45948061 C A GYLTL1B Missense_Mutation p.F359L 0.15 tolerated(1) benign(0) TCGA-CA-6717-01 11 4598945 4598945 T A C11orf40 Nonsense_Mutation p.R36* 0.15 TCGA-CA-6717-01 11 4608197 4608197 C A OR52I2 Missense_Mutation p.S52Y 0.07 tolerated(0.08) benign(0.15) TCGA-CA-6717-01 11 4609040 4609040 G T OR52I2 Missense_Mutation p.R333I 0.18 deleterious(0.02) benign(0.27) TCGA-CA-6717-01 11 46105790 46105790 C A PHF21A 5'UTR 0.27 TCGA-CA-6717-01 11 46407107 46407107 T C CHRM4 Missense_Mutation p.N334S 0.19 tolerated(0.85) benign(0.038) TCGA-CA-6717-01 11 46455163 46455163 G A AMBRA1 Missense_Mutation p.S856L 0.14 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 11 46678659 46678659 C T ATG13 Missense_Mutation p.R172C 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6717-01 11 46727391 46727391 T C ZNF408 Missense_Mutation p.V714A 0.15 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 11 46747422 46747422 C A F2 Silent p.V191V 0.18 TCGA-CA-6717-01 11 46831366 46831366 C T CKAP5 Missense_Mutation p.R230Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 11 46896593 46896593 A C LRP4 Silent p.S1329S 0.11 TCGA-CA-6717-01 11 46911654 46911654 C T LRP4 Missense_Mutation p.A645T 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 47183113 47183113 G T C11orf49 Missense_Mutation p.R313I 0.21 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-CA-6717-01 11 47311806 47311806 T C MADD Missense_Mutation p.I1037T 0.12 tolerated(0.09) benign(0.001) TCGA-CA-6717-01 11 47460243 47460243 G T RAPSN Intron 0.15 TCGA-CA-6717-01 11 47681585 47681585 A C AGBL2 3'UTR 0.29 TCGA-CA-6717-01 11 47689205 47689205 G T AGBL2 Nonsense_Mutation p.S753* 0.22 TCGA-CA-6717-01 11 47711987 47711987 A C AGBL2 Silent p.T424T 0.10 TCGA-CA-6717-01 11 47746316 47746316 C A FNBP4 Nonsense_Mutation p.E675* 0.26 TCGA-CA-6717-01 11 48145309 48145309 G T PTPRJ Missense_Mutation p.R254I 0.22 tolerated(0.18) benign(0.003) TCGA-CA-6717-01 11 48158599 48158599 G A PTPRJ Missense_Mutation p.A640T 0.10 tolerated(0.28) benign(0.057) TCGA-CA-6717-01 11 48158676 48158676 A G PTPRJ Silent p.G665G 0.26 TCGA-CA-6717-01 11 4824797 4824797 G A OR52R1 Missense_Mutation p.P272S 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-CA-6717-01 11 4824988 4824988 G T OR52R1 Missense_Mutation p.S208Y 0.08 tolerated(1) possibly_damaging(0.883) TCGA-CA-6717-01 11 48286052 48286052 G A OR4X1 Missense_Mutation p.A214T 0.11 tolerated(0.26) benign(0.219) TCGA-CA-6717-01 11 4842967 4842967 C A OR51F2 Missense_Mutation p.L118I 0.15 tolerated(1) probably_damaging(0.996) TCGA-CA-6717-01 11 48510792 48510792 G T OR4A47 Nonsense_Mutation p.G150* 0.11 TCGA-CA-6717-01 11 48510954 48510954 G A OR4A47 Missense_Mutation p.A204T 0.07 deleterious_low_confidence(0.02) benign(0.014) TCGA-CA-6717-01 11 4870097 4870097 G T OR51S1 Silent p.V114V 0.20 TCGA-CA-6717-01 11 4903096 4903096 T A OR51T1 Missense_Mutation p.F16L 0.10 deleterious_low_confidence(0.04) benign(0) TCGA-CA-6717-01 11 49207318 49207318 T G FOLH1 Silent p.P243P 0.20 TCGA-CA-6717-01 11 4928900 4928900 G T OR51A7 Nonsense_Mutation p.E101* 0.18 TCGA-CA-6717-01 11 4929000 4929000 C A OR51A7 Missense_Mutation p.S134Y 0.17 deleterious(0) probably_damaging(0.95) TCGA-CA-6717-01 11 4936063 4936063 G T OR51G2 Silent p.V277V 0.17 TCGA-CA-6717-01 11 4936381 4936381 G A OR51G2 Silent p.F171F 0.21 TCGA-CA-6717-01 11 4944973 4944973 G T OR51G1 Silent p.I199I 0.19 TCGA-CA-6717-01 11 4945195 4945195 G A OR51G1 Silent p.Y125Y 0.28 TCGA-CA-6717-01 11 4945417 4945417 A C OR51G1 Missense_Mutation p.I51M 0.10 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 11 49598103 49598103 G A RP11-707M1.1 RNA 0.09 TCGA-CA-6717-01 11 4967593 4967593 G T OR51A4 Silent p.I246I 0.06 TCGA-CA-6717-01 11 4968189 4968189 G T OR51A4 Missense_Mutation p.L48I 0.05 deleterious(0.03) benign(0.434) TCGA-CA-6717-01 11 4976347 4976347 G T OR51A2 Silent p.I199I 0.07 TCGA-CA-6717-01 11 49974428 49974428 C A OR4C13 Missense_Mutation p.L152I 0.18 tolerated_low_confidence(0.08) benign(0.424) TCGA-CA-6717-01 11 5067810 5067810 A G OR52J3 Missense_Mutation p.I19V 0.10 tolerated(0.08) probably_damaging(0.995) TCGA-CA-6717-01 11 5068032 5068032 G A OR52J3 Missense_Mutation p.E93K 0.22 tolerated(0.07) benign(0.081) TCGA-CA-6717-01 11 5080741 5080741 G A OR52E2 Silent p.I39I 0.11 TCGA-CA-6717-01 11 51516133 51516133 C A OR4C46 Silent p.I284I 0.15 TCGA-CA-6717-01 11 5153449 5153449 A G OR52A5 Missense_Mutation p.F142L 0.15 tolerated(0.55) benign(0.001) TCGA-CA-6717-01 11 5173354 5173354 C A OR52A1 Missense_Mutation p.K82N 0.21 deleterious(0.02) benign(0.179) TCGA-CA-6717-01 11 5221178 5221178 G A OR51V1 Silent p.I251I 0.23 TCGA-CA-6717-01 11 5322969 5322969 C T OR51B4 Missense_Mutation p.G70R 0.12 deleterious(0) possibly_damaging(0.872) TCGA-CA-6717-01 11 5344977 5344977 C T OR51B2 Missense_Mutation p.R184K 0.16 tolerated(1) benign(0.002) TCGA-CA-6717-01 11 5345257 5345257 T C OR51B2 Missense_Mutation p.S91G 0.09 tolerated(0.41) benign(0.001) TCGA-CA-6717-01 11 5345470 5345470 C T OR51B2 Missense_Mutation p.A20T 0.27 tolerated(0.54) benign(0.003) TCGA-CA-6717-01 11 55111521 55111521 C A OR4A16 Missense_Mutation p.P282H 0.11 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-CA-6717-01 11 55135412 55135412 G T OR4A15 Missense_Mutation p.R18M 0.09 benign(0) TCGA-CA-6717-01 11 5528951 5528951 T C UBQLN3 Missense_Mutation p.E613G 0.14 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 11 5529594 5529594 C T UBQLN3 Missense_Mutation p.E399K 0.12 deleterious(0.03) benign(0.014) TCGA-CA-6717-01 11 55339874 55339874 T C OR4C16 Missense_Mutation p.S91P 0.12 deleterious(0.01) possibly_damaging(0.905) TCGA-CA-6717-01 11 5536448 5536448 C A UBQLNL Missense_Mutation p.Q408H 0.11 deleterious(0.03) possibly_damaging(0.751) TCGA-CA-6717-01 11 5536602 5536602 T C UBQLNL Missense_Mutation p.K357R 0.09 tolerated(1) benign(0) TCGA-CA-6717-01 11 5536813 5536813 C A UBQLNL Missense_Mutation p.D287Y 0.08 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 11 5537867 5537867 C A UBQLNL 5'UTR 0.14 TCGA-CA-6717-01 11 55418890 55418890 G T OR4S2 Nonsense_Mutation p.E171* 0.23 TCGA-CA-6717-01 11 55432612 55432612 C T OR4C6 5'Flank 0.29 TCGA-CA-6717-01 11 55540959 55540959 C A OR5D13 Missense_Mutation p.L16I 0.08 deleterious(0) possibly_damaging(0.606) TCGA-CA-6717-01 11 55563187 55563187 G T OR5D14 Missense_Mutation p.K52N 0.07 deleterious(0.04) benign(0.013) TCGA-CA-6717-01 11 55579379 55579379 C A OR5L1 Missense_Mutation p.S146Y 0.10 tolerated(0.16) probably_damaging(0.928) TCGA-CA-6717-01 11 55594957 55594957 A C OR5L2 Missense_Mutation p.K88T 0.11 deleterious(0.02) benign(0.118) TCGA-CA-6717-01 11 55595261 55595261 C A OR5L2 Nonsense_Mutation p.C189* 0.24 TCGA-CA-6717-01 11 55681272 55681272 T A OR5W2 Missense_Mutation p.S263C 0.09 deleterious(0) possibly_damaging(0.652) TCGA-CA-6717-01 11 55735333 55735333 G T OR10AG1 Missense_Mutation p.L203M 0.19 tolerated(0.34) benign(0.29) TCGA-CA-6717-01 11 55798584 55798584 C A OR5AS1 Silent p.S230S 0.20 TCGA-CA-6717-01 11 55861121 55861121 T C OR8I2 Missense_Mutation p.F113S 0.18 deleterious(0.01) possibly_damaging(0.883) TCGA-CA-6717-01 11 55872818 55872818 G T OR8H2 Missense_Mutation p.Q100H 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 55904291 55904291 T G OR8J3 Missense_Mutation p.K302Q 0.18 tolerated(0.32) benign(0.005) TCGA-CA-6717-01 11 55904467 55904467 G A OR8J3 Missense_Mutation p.S243L 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 55904471 55904471 C T OR8J3 Missense_Mutation p.A242T 0.12 deleterious(0.03) benign(0.127) TCGA-CA-6717-01 11 55904783 55904783 G A OR8J3 Missense_Mutation p.R138W 0.08 deleterious(0.02) possibly_damaging(0.841) TCGA-CA-6717-01 11 5602837 5602837 T C OR52B6 Missense_Mutation p.V244A 0.17 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 11 56043792 56043792 C T OR5T1 Silent p.V226V 0.18 TCGA-CA-6717-01 11 56058018 56058018 C T OR8H1 Missense_Mutation p.R174H 0.16 tolerated(1) benign(0.001) TCGA-CA-6717-01 11 56086416 56086416 C A OR8K3 Missense_Mutation p.L212M 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.751) TCGA-CA-6717-01 11 56113832 56113832 G T OR8K1 Missense_Mutation p.Q106H 0.14 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-CA-6717-01 11 56113868 56113868 C A OR8K1 Silent p.L118L 0.21 TCGA-CA-6717-01 11 56128051 56128051 C T OR8J1 Missense_Mutation p.S110L 0.09 deleterious(0.02) benign(0.075) TCGA-CA-6717-01 11 56128168 56128168 A C OR8J1 Missense_Mutation p.Y149S 0.10 deleterious(0) probably_damaging(0.956) TCGA-CA-6717-01 11 56185291 56185291 C A OR5R1 Missense_Mutation p.V140F 0.37 deleterious(0.01) benign(0.024) TCGA-CA-6717-01 11 56237469 56237469 T G OR5M3 Missense_Mutation p.K169Q 0.15 deleterious(0.03) benign(0.01) TCGA-CA-6717-01 11 56258445 56258445 T C OR5M8 Silent p.R134R 0.15 TCGA-CA-6717-01 11 5626618 5626618 C T TRIM6 Nonsense_Mutation p.R219* 0.25 TCGA-CA-6717-01 11 56380614 56380614 C T OR5M1 Missense_Mutation p.R122H 0.27 deleterious(0.01) benign(0.046) TCGA-CA-6717-01 11 56380872 56380872 A G OR5M1 Missense_Mutation p.L36P 0.10 deleterious(0) possibly_damaging(0.775) TCGA-CA-6717-01 11 56431931 56431931 T G OR5AR1 Missense_Mutation p.F257C 0.10 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 11 56468461 56468461 T G OR9G1 Missense_Mutation p.F200V 0.12 tolerated(0.24) benign(0.142) TCGA-CA-6717-01 11 56510971 56510971 C T OR9G4 Missense_Mutation p.R106H 0.22 tolerated(0.35) benign(0.007) TCGA-CA-6717-01 11 56511168 56511168 C T OR9G4 Silent p.P40P 0.13 TCGA-CA-6717-01 11 5653865 5653865 G T TRIM34 Nonsense_Mutation p.E102* 0.08 TCGA-CA-6717-01 11 57003320 57003320 C A APLNR 3'UTR 0.20 TCGA-CA-6717-01 11 57004564 57004564 T G APLNR 5'UTR 0.12 TCGA-CA-6717-01 11 57077440 57077440 A G TNKS1BP1 Silent p.H915H 0.17 TCGA-CA-6717-01 11 57089441 57089441 A G TNKS1BP1 5'UTR 0.15 TCGA-CA-6717-01 11 57144369 57144369 C T PRG3 Missense_Mutation p.R211Q 0.21 tolerated(0.28) benign(0.139) TCGA-CA-6717-01 11 57367822 57367822 C T SERPING1 Silent p.I174I 0.11 TCGA-CA-6717-01 11 57512618 57512618 G T BTBD18 Missense_Mutation p.P376H 0.15 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 11 57575685 57575685 T G CTNND1 Missense_Mutation p.L671R 0.12 deleterious(0.02) benign(0.078) TCGA-CA-6717-01 11 5758203 5758203 G A OR56B1 Missense_Mutation p.A153T 0.29 tolerated(0.07) benign(0.279) TCGA-CA-6717-01 11 57886886 57886886 C T OR9I1 Missense_Mutation p.E11K 0.18 deleterious(0.02) benign(0.052) TCGA-CA-6717-01 11 57947001 57947001 C A OR9Q1 Missense_Mutation p.L29I 0.07 tolerated(0.32) benign(0.088) TCGA-CA-6717-01 11 57948574 57948574 C A OR9Q1 3'UTR 0.09 TCGA-CA-6717-01 11 57982443 57982443 T G OR1S1 Missense_Mutation p.L76R 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 58034298 58034298 A C OR10W1 3'UTR 0.16 TCGA-CA-6717-01 11 58189972 58189972 A G OR5B2 Missense_Mutation p.F255L 0.11 deleterious_low_confidence(0) possibly_damaging(0.795) TCGA-CA-6717-01 11 58207328 58207328 G T OR5B12 Missense_Mutation p.F99L 0.13 tolerated_low_confidence(0.22) benign(0.002) TCGA-CA-6717-01 11 58295621 58295621 G T LPXN Missense_Mutation p.F267L 0.18 deleterious(0.02) possibly_damaging(0.9) TCGA-CA-6717-01 11 58295631 58295631 C T LPXN Missense_Mutation p.R264Q 0.19 tolerated(0.13) benign(0.212) TCGA-CA-6717-01 11 5841669 5841669 T G OR52N2 Missense_Mutation p.F35C 0.19 tolerated(0.14) benign(0.002) TCGA-CA-6717-01 11 58607117 58607117 G T GLYATL2 5'UTR 0.23 TCGA-CA-6717-01 11 5862300 5862300 G T OR52E6 Missense_Mutation p.F276L 0.13 tolerated(1) benign(0.004) TCGA-CA-6717-01 11 5862357 5862357 A G OR52E6 Silent p.F257F 0.08 TCGA-CA-6717-01 11 58722741 58722741 G A GLYATL1 Missense_Mutation p.E167K 0.22 tolerated(0.5) benign(0.219) TCGA-CA-6717-01 11 58891761 58891761 A C FAM111B Missense_Mutation p.E64A 0.20 deleterious(0.02) benign(0.058) TCGA-CA-6717-01 11 58892843 58892843 C A FAM111B Missense_Mutation p.L425I 0.11 tolerated(0.3) benign(0.169) TCGA-CA-6717-01 11 58893274 58893274 A G FAM111B Silent p.Q568Q 0.19 TCGA-CA-6717-01 11 58978177 58978177 C T MPEG1 3'UTR 0.11 TCGA-CA-6717-01 11 58979593 58979593 T C MPEG1 Missense_Mutation p.N249S 0.18 tolerated(0.12) benign(0.212) TCGA-CA-6717-01 11 591435 591435 C A PHRF1 Silent p.R158R 0.24 TCGA-CA-6717-01 11 59225096 59225096 T C OR4D6 Silent p.I221I 0.10 TCGA-CA-6717-01 11 59245544 59245544 C A OR4D10 Silent p.L214L 0.31 TCGA-CA-6717-01 11 59245636 59245636 C A OR4D10 Missense_Mutation p.T245N 0.12 deleterious(0) possibly_damaging(0.836) TCGA-CA-6717-01 11 59418265 59418265 G A PATL1 Nonsense_Mutation p.R516* 0.12 TCGA-CA-6717-01 11 59426918 59426918 T C PATL1 Missense_Mutation p.E51G 0.08 tolerated(0.09) probably_damaging(0.967) TCGA-CA-6717-01 11 59554510 59554510 A C STX3 Missense_Mutation p.I39L 0.23 deleterious(0) possibly_damaging(0.517) TCGA-CA-6717-01 11 59558044 59558044 G A STX3 Silent p.R114R 0.21 TCGA-CA-6717-01 11 59863055 59863055 G T MS4A2 Nonsense_Mutation p.E221* 0.09 TCGA-CA-6717-01 11 60064775 60064775 T C MS4A4A Missense_Mutation p.Y103H 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 11 6007336 6007336 G T OR52L1 Missense_Mutation p.F275L 0.15 deleterious(0.02) benign(0.054) TCGA-CA-6717-01 11 60160214 60160214 C T MS4A7 Silent p.Y201Y 0.10 TCGA-CA-6717-01 11 60183788 60183788 C T MS4A14 Silent p.N482N 0.23 TCGA-CA-6717-01 11 60184100 60184100 A G MS4A14 Silent p.Q586Q 0.07 TCGA-CA-6717-01 11 60184292 60184292 G A MS4A14 Silent p.P650P 0.24 TCGA-CA-6717-01 11 6023314 6023314 C T OR56A4 Silent p.K355K 0.09 TCGA-CA-6717-01 11 60233486 60233486 T G MS4A1 Missense_Mutation p.I143M 0.17 tolerated(0.1) benign(0.029) TCGA-CA-6717-01 11 60235720 60235720 T C MS4A1 Intron 0.09 TCGA-CA-6717-01 11 60235878 60235878 G A MS4A1 Silent p.T277T 0.09 TCGA-CA-6717-01 11 60310017 60310017 C A MS4A13 Missense_Mutation p.S143Y 0.11 deleterious(0.01) possibly_damaging(0.556) TCGA-CA-6717-01 11 60310066 60310066 G T MS4A13 3'UTR 0.16 TCGA-CA-6717-01 11 6048169 6048169 G T OR56A1 Missense_Mutation p.L256I 0.10 deleterious(0.04) benign(0.009) TCGA-CA-6717-01 11 60699513 60699513 C T TMEM132A Missense_Mutation p.R425C 0.43 deleterious(0) probably_damaging(0.975) TCGA-CA-6717-01 11 60892569 60892569 G A CD5 Missense_Mutation p.V449M 0.19 deleterious(0.03) possibly_damaging(0.794) TCGA-CA-6717-01 11 61026390 61026390 C T VWCE Silent p.S875S 0.11 TCGA-CA-6717-01 11 61135402 61135402 G A TMEM138 Missense_Mutation p.R103H 0.21 tolerated(0.22) probably_damaging(0.983) TCGA-CA-6717-01 11 61205534 61205534 C T SDHAF2 Missense_Mutation p.R107C 0.15 tolerated(0.07) benign(0.411) TCGA-CA-6717-01 11 61253871 61253871 T C PPP1R32 Missense_Mutation p.L248P 0.15 tolerated(1) benign(0.001) TCGA-CA-6717-01 11 61724875 61724875 G A BEST1 Missense_Mutation p.R158H 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6717-01 11 61730554 61730554 C T BEST1 Missense_Mutation p.S583L 0.18 deleterious_low_confidence(0) benign(0) TCGA-CA-6717-01 11 61959525 61959525 C T SCGB1D1 Intron 0.17 TCGA-CA-6717-01 11 62065036 62065036 A T SCGB1D4 Missense_Mutation p.N50K 0.19 tolerated(0.59) benign(0.171) TCGA-CA-6717-01 11 621658 621658 C T CDHR5 Silent p.T137T 0.13 TCGA-CA-6717-01 11 62287013 62287013 T C AHNAK Missense_Mutation p.D4959G 0.23 benign(0.431) TCGA-CA-6717-01 11 62287320 62287320 C T AHNAK Missense_Mutation p.D4857N 0.22 benign(0.051) TCGA-CA-6717-01 11 62290726 62290726 G A AHNAK Silent p.I3721I 0.10 TCGA-CA-6717-01 11 62292546 62292546 T C AHNAK Missense_Mutation p.K3115E 0.24 possibly_damaging(0.84) TCGA-CA-6717-01 11 62294590 62294590 C A AHNAK Missense_Mutation p.E2433D 0.09 benign(0.008) TCGA-CA-6717-01 11 62294932 62294932 G T AHNAK Missense_Mutation p.F2319L 0.24 benign(0.003) TCGA-CA-6717-01 11 62299398 62299398 T C AHNAK Missense_Mutation p.N831D 0.14 benign(0.268) TCGA-CA-6717-01 11 62393907 62393907 C A GANAB Nonsense_Mutation p.G864* 0.16 TCGA-CA-6717-01 11 6239805 6239805 C T FAM160A2 Missense_Mutation p.R487K 0.21 tolerated(0.94) benign(0.006) TCGA-CA-6717-01 11 6244421 6244421 C A FAM160A2 Missense_Mutation p.K275N 0.18 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 11 62487510 62487510 T G HNRNPUL2 Missense_Mutation p.M589L 0.20 tolerated(0.22) benign(0.004) TCGA-CA-6717-01 11 62570961 62570961 C A NXF1 Missense_Mutation p.R100I 0.12 tolerated(0.05) benign(0.016) TCGA-CA-6717-01 11 6260477 6260477 C T CNGA4 Missense_Mutation p.P14L 0.22 deleterious(0.02) benign(0.024) TCGA-CA-6717-01 11 6260640 6260640 C T CNGA4 Missense_Mutation p.S30F 0.09 deleterious(0) possibly_damaging(0.529) TCGA-CA-6717-01 11 62655955 62655955 G A SLC3A2 Silent p.E562E 0.11 TCGA-CA-6717-01 11 6291949 6291949 C T CCKBR Missense_Mutation p.R243C 0.21 tolerated(0.06) probably_damaging(0.985) TCGA-CA-6717-01 11 62985102 62985102 G T SLC22A25 Missense_Mutation p.F204L 0.22 deleterious(0.02) benign(0.327) TCGA-CA-6717-01 11 63078686 63078686 T G SLC22A10 3'UTR 0.16 TCGA-CA-6717-01 11 63137670 63137670 C T SLC22A9 Missense_Mutation p.R48C 0.22 deleterious(0.01) possibly_damaging(0.449) TCGA-CA-6717-01 11 63175654 63175654 T G SLC22A9 Silent p.A453A 0.09 TCGA-CA-6717-01 11 63320429 63320429 C A HRASLS2 3'UTR 0.18 TCGA-CA-6717-01 11 63486643 63486643 T G RTN3 Missense_Mutation p.I223M 0.09 deleterious(0) possibly_damaging(0.838) TCGA-CA-6717-01 11 63487646 63487646 T G RTN3 Missense_Mutation p.L558V 0.22 tolerated(0.37) benign(0.07) TCGA-CA-6717-01 11 63885741 63885741 G A FLRT1 Missense_Mutation p.D668N 0.22 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 11 63967673 63967673 G T STIP1 Nonsense_Mutation p.E385* 0.10 TCGA-CA-6717-01 11 63978848 63978848 G A FERMT3 Missense_Mutation p.D206N 0.29 tolerated(0.08) benign(0.069) TCGA-CA-6717-01 11 64054336 64054336 A C GPR137 Missense_Mutation p.N172H 0.14 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 11 6432189 6432189 C T APBB1 Missense_Mutation p.R130Q 0.25 tolerated(0.52) benign(0.002) TCGA-CA-6717-01 11 64329515 64329515 G A SLC22A11 Silent p.Q179Q 0.13 TCGA-CA-6717-01 11 64361174 64361174 C T SLC22A12 Silent p.F243F 0.09 TCGA-CA-6717-01 11 64428293 64428293 C T NRXN2 Missense_Mutation p.R706Q 0.20 deleterious(0.04) benign(0) TCGA-CA-6717-01 11 64502652 64502652 C A RASGRP2 Missense_Mutation p.Q448H 0.18 tolerated(0.13) benign(0.15) TCGA-CA-6717-01 11 64519106 64519106 T G PYGM Missense_Mutation p.K597T 0.17 tolerated(0.5) benign(0.441) TCGA-CA-6717-01 11 6452600 6452600 T C HPX Silent p.E410E 0.20 TCGA-CA-6717-01 11 64596952 64596952 T C CDC42BPG Missense_Mutation p.M1320V 0.15 tolerated(0.77) benign(0) TCGA-CA-6717-01 11 6459701 6459701 C A HPX Missense_Mutation p.E125D 0.24 deleterious(0.04) benign(0.093) TCGA-CA-6717-01 11 64609170 64609170 A C CDC42BPG Missense_Mutation p.I96M 0.24 deleterious(0) possibly_damaging(0.895) TCGA-CA-6717-01 11 64662473 64662473 T C ATG2A Missense_Mutation p.K1930R 0.09 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 11 64882447 64882447 G A TM7SF2 Silent p.G262G 0.12 TCGA-CA-6717-01 11 64898404 64898404 T C SYVN1 Missense_Mutation p.I310V 0.18 deleterious(0) possibly_damaging(0.68) TCGA-CA-6717-01 11 64953726 64953726 G A CAPN1 Missense_Mutation p.E226K 0.10 deleterious(0.01) possibly_damaging(0.669) TCGA-CA-6717-01 11 65057326 65057326 T C POLA2 Silent p.I409I 0.14 TCGA-CA-6717-01 11 65320345 65320345 C T LTBP3 Missense_Mutation p.R391H 0.18 tolerated(0.26) probably_damaging(0.937) TCGA-CA-6717-01 11 65360681 65360681 C T KCNK7 Missense_Mutation p.G240D 0.35 tolerated(0.09) benign(0.186) TCGA-CA-6717-01 11 65360747 65360747 G A KCNK7 Intron 0.13 TCGA-CA-6717-01 11 65384328 65384328 T C PCNXL3 Missense_Mutation p.Y63H 0.19 deleterious(0) benign(0.29) TCGA-CA-6717-01 11 65388385 65388385 C T PCNXL3 Missense_Mutation p.P728L 0.17 tolerated(0.48) benign(0.058) TCGA-CA-6717-01 11 65486550 65486550 C T KAT5 Silent p.I513I 0.12 TCGA-CA-6717-01 11 6560489 6560489 G A DNHD1 Silent p.T1122T 0.29 TCGA-CA-6717-01 11 65617942 65617942 G T SNX32 Nonsense_Mutation p.E139* 0.16 TCGA-CA-6717-01 11 65780356 65780356 G T CST6 Missense_Mutation p.K100N 0.32 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 65788097 65788097 G A CATSPER1 Silent p.G643G 0.20 TCGA-CA-6717-01 11 65792780 65792780 C T CATSPER1 Silent p.R357R 0.16 TCGA-CA-6717-01 11 65978616 65978616 C A PACS1 Missense_Mutation p.F182L 0.11 deleterious(0) possibly_damaging(0.9) TCGA-CA-6717-01 11 66109021 66109021 G T BRMS1 Missense_Mutation p.F71L 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 66189724 66189724 G T NPAS4 Missense_Mutation p.E103D 0.23 tolerated(0.22) benign(0.005) TCGA-CA-6717-01 11 66238792 66238792 G A PELI3 Missense_Mutation p.G102R 0.13 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 6629675 6629675 C T ILK Missense_Mutation p.P103S 0.20 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 11 66298463 66298463 C T BBS1 Silent p.N524N 0.18 TCGA-CA-6717-01 11 66328754 66328754 G A CTSF 3'Flank 0.20 TCGA-CA-6717-01 11 66358139 66358139 A G CCDC87 Missense_Mutation p.L783S 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 66358576 66358576 A - CCDC87 Frame_Shift_Del p.P639Hfs*3 0.10 TCGA-CA-6717-01 11 66358884 66358884 C A CCDC87 Nonsense_Mutation p.E535* 0.27 TCGA-CA-6717-01 11 6661746 6661746 G T DCHS1 Missense_Mutation p.L367I 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-CA-6717-01 11 66813321 66813321 C A SYT12 Silent p.I355I 0.13 TCGA-CA-6717-01 11 66975116 66975116 T G KDM2A Missense_Mutation p.F148C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 67012916 67012916 G A KDM2A Missense_Mutation p.R607Q 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 6703635 6703635 T G MRPL17 Splice_Site p.X82_splice 0.28 TCGA-CA-6717-01 11 67254567 67254567 A G AIP Missense_Mutation p.I64V 0.21 tolerated(0.57) benign(0.002) TCGA-CA-6717-01 11 67430743 67430743 G T ALDH3B2 Missense_Mutation p.D367E 0.10 tolerated(0.55) benign(0.001) TCGA-CA-6717-01 11 67837723 67837723 C A CHKA Nonsense_Mutation p.E268* 0.11 TCGA-CA-6717-01 11 6789382 6789382 T C OR2AG2 Silent p.K269K 0.13 TCGA-CA-6717-01 11 6789445 6789445 G A OR2AG2 Silent p.V248V 0.16 TCGA-CA-6717-01 11 67934579 67934579 T G SUV420H1 Missense_Mutation p.K348N 0.09 deleterious(0.01) probably_damaging(0.96) TCGA-CA-6717-01 11 67938548 67938548 G T SUV420H1 Missense_Mutation p.S304Y 0.25 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 11 6816141 6816141 G A OR6A2 Missense_Mutation p.P267S 0.11 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 11 68305184 68305184 G T PPP6R3 Nonsense_Mutation p.E18* 0.09 TCGA-CA-6717-01 11 68321675 68321675 A G PPP6R3 Silent p.L227L 0.10 TCGA-CA-6717-01 11 68748428 68748428 T C MRGPRD Missense_Mutation p.T10A 0.10 tolerated(0.39) benign(0.004) TCGA-CA-6717-01 11 6913586 6913586 A G OR2D2 Missense_Mutation p.V49A 0.08 tolerated(0.05) benign(0.06) TCGA-CA-6717-01 11 69482342 69482342 A C ORAOV1 Missense_Mutation p.L120R 0.13 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 11 6953842 6953842 A G ZNF215 Silent p.P113P 0.09 TCGA-CA-6717-01 11 69954481 69954481 C T ANO1 Missense_Mutation p.T257M 0.18 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 11 70033934 70033934 C A ANO1 Missense_Mutation p.L929I 0.15 tolerated(0.12) possibly_damaging(0.463) TCGA-CA-6717-01 11 70318981 70318981 T C SHANK2 Missense_Mutation p.D1849G 0.21 deleterious(0) possibly_damaging(0.539) TCGA-CA-6717-01 11 70348312 70348312 G A SHANK2 Silent p.L760L 0.14 TCGA-CA-6717-01 11 7092513 7092513 G T NLRP14 Missense_Mutation p.D1086Y 0.18 deleterious(0.04) benign(0.009) TCGA-CA-6717-01 11 7112319 7112319 A C RBMXL2 3'UTR 0.30 TCGA-CA-6717-01 11 71164421 71164421 T G NADSYN1 Missense_Mutation p.L27V 0.11 tolerated(0.15) benign(0.12) TCGA-CA-6717-01 11 71239098 71239098 T C KRTAP5-7 3'UTR 0.25 TCGA-CA-6717-01 11 71510679 71510679 A G FAM86C1 Missense_Mutation p.R162G 0.21 deleterious_low_confidence(0) benign(0.052) TCGA-CA-6717-01 11 71544275 71544275 T G DEFB108B Missense_Mutation p.I10M 0.08 deleterious(0.01) benign(0.001) TCGA-CA-6717-01 11 71693913 71693913 T C RNF121 Missense_Mutation p.F117S 0.10 tolerated(0.15) benign(0.056) TCGA-CA-6717-01 11 71718386 71718386 T C NUMA1 Missense_Mutation p.E1771G 0.22 probably_damaging(0.999) TCGA-CA-6717-01 11 71725292 71725292 G A NUMA1 Missense_Mutation p.T1086I 0.09 possibly_damaging(0.691) TCGA-CA-6717-01 11 71806204 71806204 G T LRTOMT Intron 0.27 TCGA-CA-6717-01 11 72005444 72005444 G A CLPB Silent p.I565I 0.10 TCGA-CA-6717-01 11 72290041 72290041 C T PDE2A Missense_Mutation p.R790Q 0.24 tolerated(0.37) benign(0.002) TCGA-CA-6717-01 11 72293550 72293550 C A PDE2A Missense_Mutation p.D597Y 0.18 tolerated(0.7) benign(0.004) TCGA-CA-6717-01 11 72295691 72295691 C T PDE2A Missense_Mutation p.A481T 0.17 deleterious(0.01) probably_damaging(0.931) TCGA-CA-6717-01 11 72408439 72408439 G A ARAP1 Missense_Mutation p.S961L 0.38 deleterious(0.01) probably_damaging(0.921) TCGA-CA-6717-01 11 72579048 72579048 G A FCHSD2 Silent p.A390A 0.21 TCGA-CA-6717-01 11 73007787 73007787 A G P2RY6 Missense_Mutation p.Y75C 0.20 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 11 73022127 73022127 A G ARHGEF17 Missense_Mutation p.D815G 0.10 deleterious_low_confidence(0) benign(0.174) TCGA-CA-6717-01 11 73105282 73105282 G T RELT Missense_Mutation p.E236D 0.27 tolerated(0.05) possibly_damaging(0.708) TCGA-CA-6717-01 11 73387378 73387378 A G RAB6A 3'UTR 0.09 TCGA-CA-6717-01 11 73387700 73387700 A C RAB6A 3'UTR 0.15 TCGA-CA-6717-01 11 73388692 73388692 A C RAB6A 3'UTR 0.25 TCGA-CA-6717-01 11 74322576 74322576 A C POLD3 Missense_Mutation p.K84N 0.10 deleterious(0.01) benign(0.108) TCGA-CA-6717-01 11 7509565 7509565 G A OLFML1 Missense_Mutation p.E113K 0.08 deleterious(0) benign(0.273) TCGA-CA-6717-01 11 75167860 75167860 A C GDPD5 Missense_Mutation p.V106G 0.16 deleterious(0) benign(0.375) TCGA-CA-6717-01 11 75188792 75188792 C T GDPD5 5'UTR 0.34 TCGA-CA-6717-01 11 75298024 75298024 T G MAP6 3'UTR 0.22 TCGA-CA-6717-01 11 75298896 75298896 A G MAP6 Silent p.D550D 0.12 TCGA-CA-6717-01 11 7531307 7531307 G T OLFML1 Missense_Mutation p.R366I 0.14 tolerated(0.11) possibly_damaging(0.88) TCGA-CA-6717-01 11 75562938 75562938 G A UVRAG Missense_Mutation p.R43Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 75563035 75563035 G T UVRAG Missense_Mutation p.K75N 0.09 tolerated(0.37) benign(0.195) TCGA-CA-6717-01 11 76063169 76063169 A G PRKRIR Missense_Mutation p.V342A 0.12 tolerated(0.85) benign(0.002) TCGA-CA-6717-01 11 76162966 76162966 G T C11orf30 Missense_Mutation p.K45N 0.09 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-CA-6717-01 11 76867742 76867742 G T MYO7A Missense_Mutation p.K169N 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 11 76873353 76873353 G A MYO7A Missense_Mutation p.D511N 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 11 7690884 7690884 T C CYB5R2 Missense_Mutation p.D77G 0.12 deleterious(0) possibly_damaging(0.634) TCGA-CA-6717-01 11 77412075 77412075 G A RSF1 Silent p.I733I 0.08 TCGA-CA-6717-01 11 77692568 77692568 T G INTS4 Missense_Mutation p.K101Q 0.09 tolerated(0.19) benign(0.221) TCGA-CA-6717-01 11 77784179 77784179 G A NDUFC2 Missense_Mutation p.R59C 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 77790754 77790754 G A NDUFC2 Silent p.L13L 0.12 TCGA-CA-6717-01 11 77815047 77815047 G A ALG8 Missense_Mutation p.S443L 0.08 tolerated(0.69) benign(0.015) TCGA-CA-6717-01 11 77823708 77823708 G A ALG8 Silent p.L296L 0.09 TCGA-CA-6717-01 11 77825414 77825414 G T ALG8 Missense_Mutation p.L191I 0.13 tolerated(0.17) benign(0.026) TCGA-CA-6717-01 11 77835125 77835125 G A ALG8 Missense_Mutation p.L104F 0.16 tolerated(0.12) benign(0.038) TCGA-CA-6717-01 11 77884838 77884838 G A KCTD21 Nonsense_Mutation p.R255* 0.28 TCGA-CA-6717-01 11 78279778 78279778 G A NARS2 Missense_Mutation p.S91F 0.11 deleterious(0.02) probably_damaging(0.948) TCGA-CA-6717-01 11 78449530 78449530 G T TENM4 Missense_Mutation p.L948I 0.08 tolerated(0.19) benign(0.017) TCGA-CA-6717-01 11 7847405 7847405 A C OR5P3 Missense_Mutation p.L39V 0.13 tolerated(0.67) benign(0.02) TCGA-CA-6717-01 11 78523351 78523351 G A TENM4 Silent p.P598P 0.26 TCGA-CA-6717-01 11 7949787 7949787 A C OR10A6 Missense_Mutation p.F141L 0.14 deleterious(0.03) benign(0.013) TCGA-CA-6717-01 11 7949932 7949932 G T OR10A6 Missense_Mutation p.S93Y 0.11 deleterious(0) possibly_damaging(0.84) TCGA-CA-6717-01 11 7981640 7981640 T C NLRP10 Missense_Mutation p.N507D 0.11 tolerated(0.48) benign(0.004) TCGA-CA-6717-01 11 7981839 7981839 G A NLRP10 Silent p.G440G 0.20 TCGA-CA-6717-01 11 800809 800809 G A PIDD Missense_Mutation p.R624C 0.09 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 11 804194 804194 T G PIDD Missense_Mutation p.E65D 0.22 deleterious(0.05) benign(0.017) TCGA-CA-6717-01 11 812864 812864 T G RPLP2 3'UTR 0.12 TCGA-CA-6717-01 11 8161689 8161689 T C RIC3 Missense_Mutation p.D59G 0.23 tolerated(0.1) probably_damaging(1) TCGA-CA-6717-01 11 82443560 82443560 A C FAM181B Nonsense_Mutation p.Y404* 0.21 TCGA-CA-6717-01 11 82535945 82535945 T G PRCP 3'UTR 0.12 TCGA-CA-6717-01 11 82550346 82550346 T C PRCP Missense_Mutation p.E369G 0.17 tolerated(0.12) benign(0.022) TCGA-CA-6717-01 11 82698559 82698559 T G RAB30 Intron 0.11 TCGA-CA-6717-01 11 82872434 82872434 A C PCF11 Missense_Mutation p.R86S 0.09 tolerated(0.13) benign(0.365) TCGA-CA-6717-01 11 82877650 82877650 A C PCF11 Missense_Mutation p.N571H 0.10 deleterious(0.01) benign(0.133) TCGA-CA-6717-01 11 82892995 82892995 G A PCF11 Missense_Mutation p.A1423T 0.26 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 11 82921451 82921451 G A ANKRD42 Missense_Mutation p.R119Q 0.13 tolerated(0.06) benign(0.316) TCGA-CA-6717-01 11 82976919 82976919 G A CCDC90B Missense_Mutation p.R233C 0.13 tolerated(0.05) benign(0.262) TCGA-CA-6717-01 11 83195171 83195171 C T DLG2 Splice_Site p.X765_splice 0.12 TCGA-CA-6717-01 11 83344284 83344284 C T DLG2 Missense_Mutation p.R637Q 0.10 deleterious(0.02) possibly_damaging(0.642) TCGA-CA-6717-01 11 83962297 83962297 A G DLG2 Missense_Mutation p.L186S 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-CA-6717-01 11 8496277 8496277 C A STK33 Missense_Mutation p.R59I 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.653) TCGA-CA-6717-01 11 84996351 84996351 C A DLG2 Missense_Mutation p.K33N 0.11 deleterious_low_confidence(0) benign(0.023) TCGA-CA-6717-01 11 85347075 85347075 C A TMEM126B Intron 0.14 TCGA-CA-6717-01 11 85436549 85436549 C A SYTL2 Missense_Mutation p.K317N 0.13 deleterious(0.01) benign(0.05) TCGA-CA-6717-01 11 8640932 8640932 A C TRIM66 Missense_Mutation p.Y1153D 0.19 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 11 86521041 86521041 G A PRSS23 3'UTR 0.17 TCGA-CA-6717-01 11 8662600 8662600 G A TRIM66 Missense_Mutation p.P294L 0.19 deleterious(0) benign(0.424) TCGA-CA-6717-01 11 86782579 86782579 A C TMEM135 Missense_Mutation p.K95T 0.08 tolerated(0.1) benign(0.323) TCGA-CA-6717-01 11 88042361 88042361 C T CTSC Missense_Mutation p.R204K 0.12 tolerated(0.08) benign(0.049) TCGA-CA-6717-01 11 88323880 88323880 C A GRM5 Nonsense_Mutation p.E527* 0.12 TCGA-CA-6717-01 11 88330490 88330490 T C GRM5 Silent p.G475G 0.16 TCGA-CA-6717-01 11 88337912 88337912 G A GRM5 Silent p.F456F 0.19 TCGA-CA-6717-01 11 88338063 88338063 G A GRM5 Missense_Mutation p.S406L 0.21 deleterious(0) possibly_damaging(0.756) TCGA-CA-6717-01 11 88924512 88924512 G A TYR Missense_Mutation p.C321Y 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 89155108 89155108 G T NOX4 Missense_Mutation p.F197L 0.20 deleterious(0) probably_damaging(0.96) TCGA-CA-6717-01 11 89443679 89443679 G T TRIM77 Missense_Mutation p.E71D 0.17 deleterious(0.01) benign(0.217) TCGA-CA-6717-01 11 89450793 89450793 G A TRIM77 Missense_Mutation p.R369Q 0.16 tolerated(0.25) benign(0.01) TCGA-CA-6717-01 11 89531757 89531757 G T TRIM49 Silent p.I300I 0.14 TCGA-CA-6717-01 11 89883686 89883686 G T NAALAD2 Missense_Mutation p.D174Y 0.06 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 11 89911237 89911237 C A NAALAD2 Missense_Mutation p.L604I 0.20 tolerated(0.34) benign(0.002) TCGA-CA-6717-01 11 9005322 9005322 G T NRIP3 Intron 0.26 TCGA-CA-6717-01 11 9202558 9202558 T G DENND5A Missense_Mutation p.K404T 0.09 deleterious(0.01) possibly_damaging(0.638) TCGA-CA-6717-01 11 92087147 92087147 C A FAT3 Missense_Mutation p.F623L 0.21 benign(0.001) TCGA-CA-6717-01 11 92532065 92532065 C A FAT3 Missense_Mutation p.F1962L 0.18 probably_damaging(0.998) TCGA-CA-6717-01 11 92533040 92533040 C T FAT3 Silent p.F2287F 0.21 TCGA-CA-6717-01 11 92623055 92623055 G A FAT3 Missense_Mutation p.R4382Q 0.08 benign(0.411) TCGA-CA-6717-01 11 92623844 92623844 C A FAT3 Missense_Mutation p.F4445L 0.18 benign(0) TCGA-CA-6717-01 11 92714993 92714993 G A MTNR1B Missense_Mutation p.A202T 0.09 deleterious(0.04) benign(0.014) TCGA-CA-6717-01 11 92715227 92715227 G T MTNR1B Nonsense_Mutation p.E280* 0.29 TCGA-CA-6717-01 11 92715268 92715268 C T MTNR1B Silent p.S293S 0.24 TCGA-CA-6717-01 11 92896004 92896004 C T SLC36A4 Missense_Mutation p.R302H 0.12 tolerated(0.36) benign(0.027) TCGA-CA-6717-01 11 92899154 92899154 A T SLC36A4 Missense_Mutation p.I266K 0.21 tolerated(0.09) benign(0.016) TCGA-CA-6717-01 11 93065388 93065388 A C CCDC67 5'UTR 0.11 TCGA-CA-6717-01 11 93097451 93097451 G T CCDC67 Missense_Mutation p.Q141H 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-CA-6717-01 11 93141562 93141562 A C CCDC67 Missense_Mutation p.S498R 0.12 deleterious(0.01) benign(0.394) TCGA-CA-6717-01 11 93800853 93800853 G T HEPHL1 Nonsense_Mutation p.E334* 0.19 TCGA-CA-6717-01 11 93803635 93803636 - A HEPHL1 Frame_Shift_Ins p.I389Nfs*11 0.11 TCGA-CA-6717-01 11 93911730 93911730 C T PANX1 Missense_Mutation p.P173S 0.11 deleterious(0.03) benign(0.297) TCGA-CA-6717-01 11 94192696 94192696 C A MRE11A Nonsense_Mutation p.E460* 0.24 TCGA-CA-6717-01 11 94278636 94278636 A G FUT4 Missense_Mutation p.N446S 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-CA-6717-01 11 94279224 94279224 A C FUT4 3'UTR 0.13 TCGA-CA-6717-01 11 94310463 94310463 G A PIWIL4 Silent p.V106V 0.31 TCGA-CA-6717-01 11 94532574 94532574 A C AMOTL1 Missense_Mutation p.N73T 0.09 tolerated_low_confidence(0.48) benign(0.05) TCGA-CA-6717-01 11 94597939 94597939 C T AMOTL1 Silent p.Y725Y 0.09 TCGA-CA-6717-01 11 94731307 94731307 T G KDM4D Missense_Mutation p.N257K 0.24 tolerated(0.13) probably_damaging(0.952) TCGA-CA-6717-01 11 94801403 94801403 A C SRSF8 3'UTR 0.24 TCGA-CA-6717-01 11 9516259 9516259 C T ZNF143 Nonsense_Mutation p.R238* 0.09 TCGA-CA-6717-01 11 95519305 95519305 C T FAM76B Missense_Mutation p.R114Q 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 11 95546134 95546134 C T CEP57 Nonsense_Mutation p.R81* 0.22 TCGA-CA-6717-01 11 95568596 95568596 T C MTMR2 Missense_Mutation p.Y597C 0.08 tolerated(0.14) benign(0.005) TCGA-CA-6717-01 11 95571277 95571277 T G MTMR2 Missense_Mutation p.E525A 0.09 deleterious(0) possibly_damaging(0.844) TCGA-CA-6717-01 11 95590775 95590775 C A MTMR2 Nonsense_Mutation p.E199* 0.15 TCGA-CA-6717-01 11 95598811 95598811 T G MTMR2 Missense_Mutation p.E72D 0.13 tolerated(0.35) benign(0.008) TCGA-CA-6717-01 11 95713027 95713027 A G MAML2 Silent p.S852S 0.10 TCGA-CA-6717-01 11 9598794 9598794 G A WEE1 Silent p.Q375Q 0.14 TCGA-CA-6717-01 11 96126402 96126402 A C JRKL 3'UTR 0.18 TCGA-CA-6717-01 11 9853949 9853949 G A SBF2 Silent p.V1158V 0.09 TCGA-CA-6717-01 11 9875182 9875182 G T SBF2 Missense_Mutation p.S814Y 0.28 tolerated(0.31) benign(0.009) TCGA-CA-6717-01 11 99426933 99426933 C A CNTN5 5'UTR 0.18 TCGA-CA-6717-01 11 99944890 99944890 T G CNTN5 Missense_Mutation p.F482V 0.10 deleterious(0) possibly_damaging(0.733) TCGA-CA-6717-01 12 100166805 100166805 C A ANKS1B Missense_Mutation p.K341N 0.17 deleterious(0.01) possibly_damaging(0.504) TCGA-CA-6717-01 12 100452055 100452055 C A UHRF1BP1L Missense_Mutation p.K1000N 0.22 tolerated(0.34) benign(0.002) TCGA-CA-6717-01 12 100657285 100657285 C A DEPDC4 Nonsense_Mutation p.E182* 0.26 TCGA-CA-6717-01 12 10066174 10066174 A C CLEC2A Nonsense_Mutation p.Y172* 0.13 TCGA-CA-6717-01 12 100813706 100813706 G T SLC17A8 Missense_Mutation p.E513D 0.27 deleterious(0.05) probably_damaging(0.992) TCGA-CA-6717-01 12 100904639 100904639 C A NR1H4 Missense_Mutation p.P65T 0.18 deleterious(0.04) benign(0.023) TCGA-CA-6717-01 12 100926237 100926237 T C NR1H4 Silent p.G159G 0.25 TCGA-CA-6717-01 12 100930351 100930351 A G NR1H4 Missense_Mutation p.N275S 0.25 tolerated(0.29) benign(0) TCGA-CA-6717-01 12 101504328 101504328 G T ANO4 Missense_Mutation p.D731Y 0.17 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 12 101505376 101505376 C T ANO4 Missense_Mutation p.L745F 0.24 deleterious(0.03) probably_damaging(0.972) TCGA-CA-6717-01 12 101520726 101520726 C T ANO4 Nonsense_Mutation p.R881* 0.08 TCGA-CA-6717-01 12 101561909 101561909 C T SLC5A8 Missense_Mutation p.A429T 0.13 tolerated(0.61) benign(0.002) TCGA-CA-6717-01 12 101603328 101603328 G A SLC5A8 Missense_Mutation p.A100V 0.32 deleterious(0.01) possibly_damaging(0.71) TCGA-CA-6717-01 12 101703550 101703550 C T UTP20 Missense_Mutation p.R722C 0.11 deleterious(0) probably_damaging(0.97) TCGA-CA-6717-01 12 101750395 101750395 C T UTP20 Nonsense_Mutation p.R1820* 0.09 TCGA-CA-6717-01 12 101880472 101880472 C T SPIC Missense_Mutation p.L224F 0.19 tolerated(0.49) benign(0.015) TCGA-CA-6717-01 12 102071915 102071915 G T MYBPC1 Missense_Mutation p.D1042Y 0.21 deleterious(0) possibly_damaging(0.886) TCGA-CA-6717-01 12 102161790 102161790 G A GNPTAB Intron 0.12 TCGA-CA-6717-01 12 102173949 102173949 A C GNPTAB Missense_Mutation p.L251R 0.08 deleterious(0.01) probably_damaging(0.934) TCGA-CA-6717-01 12 10223915 10223915 T C CLEC1A 3'UTR 0.15 TCGA-CA-6717-01 12 102542136 102542136 T G PARPBP Missense_Mutation p.I94M 0.09 deleterious(0.01) benign(0.051) TCGA-CA-6717-01 12 102558273 102558273 A C PARPBP Missense_Mutation p.K185Q 0.10 deleterious(0.04) possibly_damaging(0.662) TCGA-CA-6717-01 12 102569370 102569370 T C PARPBP Silent p.L311L 0.16 TCGA-CA-6717-01 12 102796191 102796191 T G IGF1 3'UTR 0.19 TCGA-CA-6717-01 12 103246614 103246614 T G PAH Missense_Mutation p.K274T 0.10 tolerated(0.26) benign(0.114) TCGA-CA-6717-01 12 103246653 103246653 C T PAH Missense_Mutation p.R261Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 103260432 103260432 C A PAH Missense_Mutation p.D151Y 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 103271275 103271275 G T PAH Missense_Mutation p.L136I 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 12 103288518 103288518 T C PAH Missense_Mutation p.D116G 0.12 tolerated(0.07) benign(0.002) TCGA-CA-6717-01 12 10332079 10332079 G T TMEM52B 5'UTR 0.28 TCGA-CA-6717-01 12 10342809 10342809 T G TMEM52B 3'UTR 0.19 TCGA-CA-6717-01 12 10365741 10365741 T C GABARAPL1 Missense_Mutation p.Y5H 0.18 deleterious(0.01) probably_damaging(0.96) TCGA-CA-6717-01 12 104126835 104126835 C A STAB2 Missense_Mutation p.L1779I 0.20 tolerated(0.13) benign(0.111) TCGA-CA-6717-01 12 104336433 104336433 G A HSP90B1 Silent p.S501S 0.24 TCGA-CA-6717-01 12 104459949 104459949 G A HCFC2 Silent p.T56T 0.19 TCGA-CA-6717-01 12 104476540 104476540 A G HCFC2 Silent p.K308K 0.10 TCGA-CA-6717-01 12 104476593 104476593 G A HCFC2 Missense_Mutation p.R326Q 0.15 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 12 10460580 10460580 C A KLRD1 5'UTR 0.12 TCGA-CA-6717-01 12 104651816 104651816 C A TXNRD1 Missense_Mutation p.S88Y 0.09 deleterious(0) benign(0.133) TCGA-CA-6717-01 12 104712760 104712760 G A TXNRD1 Missense_Mutation p.R267Q 0.25 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 12 105151347 105151347 C T CHST11 Silent p.L275L 0.19 TCGA-CA-6717-01 12 10525691 10525691 T G KLRK1 3'UTR 0.17 TCGA-CA-6717-01 12 105321977 105321977 T G SLC41A2 Missense_Mutation p.D110A 0.12 deleterious(0.04) benign(0.005) TCGA-CA-6717-01 12 105462647 105462647 T C ALDH1L2 Silent p.G148G 0.10 TCGA-CA-6717-01 12 105536271 105536271 C T KIAA1033 Nonsense_Mutation p.R610* 0.10 TCGA-CA-6717-01 12 105538203 105538203 C A KIAA1033 Silent p.R717R 0.08 TCGA-CA-6717-01 12 105593257 105593257 C A APPL2 Nonsense_Mutation p.E259* 0.12 TCGA-CA-6717-01 12 10583807 10583807 G A KLRC2 Missense_Mutation p.A202V 0.09 tolerated(0.21) benign(0.004) TCGA-CA-6717-01 12 10603734 10603734 A C KLRC1 Missense_Mutation p.Y8D 0.09 deleterious(0) probably_damaging(0.968) TCGA-CA-6717-01 12 106740215 106740215 A C TCP11L2 Missense_Mutation p.Q489H 0.12 tolerated(0.13) probably_damaging(0.963) TCGA-CA-6717-01 12 107208697 107208697 A C RIC8B Missense_Mutation p.K119T 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 107364957 107364957 A G C12orf23 Missense_Mutation p.K47E 0.09 deleterious_low_confidence(0) benign(0.202) TCGA-CA-6717-01 12 107395089 107395089 A C CRY1 Missense_Mutation p.L218R 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 10762433 10762433 T C MAGOHB Silent p.R87R 0.12 TCGA-CA-6717-01 12 107937757 107937757 C T BTBD11 Missense_Mutation p.A444V 0.16 tolerated(0.26) benign(0.118) TCGA-CA-6717-01 12 108004111 108004111 G A BTBD11 Silent p.G596G 0.10 TCGA-CA-6717-01 12 108006595 108006595 C T BTBD11 Silent p.D616D 0.13 TCGA-CA-6717-01 12 108170190 108170190 G T ASCL4 3'UTR 0.13 TCGA-CA-6717-01 12 108170267 108170267 A G ASCL4 3'UTR 0.08 TCGA-CA-6717-01 12 108604004 108604004 G A WSCD2 Missense_Mutation p.E202K 0.25 deleterious(0.01) possibly_damaging(0.527) TCGA-CA-6717-01 12 108920209 108920209 C T SART3 Silent p.S679S 0.17 TCGA-CA-6717-01 12 108923969 108923969 T C SART3 Missense_Mutation p.K622R 0.10 deleterious(0.02) benign(0.012) TCGA-CA-6717-01 12 108941766 108941766 C T SART3 Silent p.E147E 0.24 TCGA-CA-6717-01 12 108961014 108961014 T G ISCU Missense_Mutation p.C130G 0.12 deleterious_low_confidence(0.04) benign(0.442) TCGA-CA-6717-01 12 109041273 109041273 A C CORO1C Missense_Mutation p.I444S 0.13 deleterious(0.04) benign(0.322) TCGA-CA-6717-01 12 109577476 109577476 G T ACACB Missense_Mutation p.R89I 0.32 deleterious_low_confidence(0.01) benign(0.019) TCGA-CA-6717-01 12 10958648 10958648 T G TAS2R9 3'Flank 0.20 TCGA-CA-6717-01 12 10958815 10958815 G T TAS2R8 Silent p.T255T 0.13 TCGA-CA-6717-01 12 109692076 109692076 G T ACACB Nonsense_Mutation p.E2035* 0.13 TCGA-CA-6717-01 12 10978191 10978191 C A TAS2R10 Missense_Mutation p.M226I 0.19 tolerated(0.2) possibly_damaging(0.773) TCGA-CA-6717-01 12 109847385 109847385 T C MYO1H Silent p.I377I 0.11 TCGA-CA-6717-01 12 109847770 109847770 T G MYO1H Missense_Mutation p.F393C 0.19 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 12 109877576 109877576 C A MYO1H Missense_Mutation p.P796H 0.12 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 12 109972444 109972444 C T UBE3B Missense_Mutation p.R1022C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 110019277 110019277 C T MVK Missense_Mutation p.S150L 0.17 deleterious(0) probably_damaging(0.947) TCGA-CA-6717-01 12 110234507 110234507 G T TRPV4 Silent p.I385I 0.36 TCGA-CA-6717-01 12 110352309 110352309 G T TCHP Missense_Mutation p.E399D 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6717-01 12 110389119 110389119 G A GIT2 Silent p.S415S 0.16 TCGA-CA-6717-01 12 110468450 110468450 A G ANKRD13A Missense_Mutation p.E412G 0.17 deleterious(0.03) possibly_damaging(0.517) TCGA-CA-6717-01 12 110503777 110503777 G A C12orf76 5'UTR 0.19 TCGA-CA-6717-01 12 11061178 11061178 G T TAS2R13 Missense_Mutation p.F240L 0.09 tolerated(1) benign(0) TCGA-CA-6717-01 12 11061646 11061646 A C TAS2R13 Missense_Mutation p.I84M 0.21 tolerated(0.09) benign(0.291) TCGA-CA-6717-01 12 110873948 110873948 T G ARPC3 Missense_Mutation p.K147N 0.13 tolerated(0.05) benign(0.036) TCGA-CA-6717-01 12 110874388 110874388 G A ARPC3 Missense_Mutation p.A118V 0.12 tolerated(0.07) benign(0.004) TCGA-CA-6717-01 12 110929928 110929928 C A VPS29 Splice_Site p.X148_splice 0.22 TCGA-CA-6717-01 12 110960215 110960215 A C RAD9B Missense_Mutation p.K375T 0.12 deleterious(0.02) possibly_damaging(0.804) TCGA-CA-6717-01 12 110968374 110968374 A G RAD9B Silent p.E390E 0.09 TCGA-CA-6717-01 12 110968619 110968619 G T RAD9B Intron 0.38 TCGA-CA-6717-01 12 111078863 111078863 A G TCTN1 Missense_Mutation p.E338G 0.22 deleterious(0) possibly_damaging(0.714) TCGA-CA-6717-01 12 111089137 111089137 G A HVCN1 Silent p.V176V 0.19 TCGA-CA-6717-01 12 11139218 11139218 C A TAS2R50 Missense_Mutation p.R81I 0.27 tolerated(0.06) benign(0.366) TCGA-CA-6717-01 12 11150145 11150145 G A TAS2R20 Silent p.I110I 0.23 TCGA-CA-6717-01 12 11183239 11183239 G C TAS2R31 Missense_Mutation p.I232M 0.24 deleterious(0) probably_damaging(0.93) TCGA-CA-6717-01 12 11183259 11183259 T G TAS2R31 Missense_Mutation p.K226Q 0.22 deleterious(0.01) probably_damaging(0.956) TCGA-CA-6717-01 12 111951304 111951304 C T ATXN2 Missense_Mutation p.R632Q 0.19 probably_damaging(0.997) TCGA-CA-6717-01 12 112087828 112087828 T G BRAP Missense_Mutation p.K444Q 0.12 deleterious(0.01) possibly_damaging(0.527) TCGA-CA-6717-01 12 11214777 11214777 T C TAS2R46 Silent p.Q39Q 0.09 TCGA-CA-6717-01 12 112330927 112330927 A C MAPKAPK5 3'UTR 0.32 TCGA-CA-6717-01 12 112512521 112512521 C T NAA25 Missense_Mutation p.R275Q 0.25 tolerated(0.53) benign(0.002) TCGA-CA-6717-01 12 112664521 112664521 A C HECTD4 Missense_Mutation p.F2153C 0.14 probably_damaging(0.972) TCGA-CA-6717-01 12 112686176 112686176 T G HECTD4 Missense_Mutation p.K1218T 0.09 benign(0.262) TCGA-CA-6717-01 12 11286168 11286168 T A TAS2R30 Nonsense_Mutation p.K226* 0.09 TCGA-CA-6717-01 12 113442869 113442869 A G OAS2 Missense_Mutation p.E437G 0.10 deleterious(0.04) benign(0.158) TCGA-CA-6717-01 12 113532977 113532977 G A DTX1 Missense_Mutation p.R506H 0.18 tolerated(0.11) probably_damaging(0.998) TCGA-CA-6717-01 12 113733805 113733805 G A TPCN1 Missense_Mutation p.R864Q 0.18 tolerated(0.68) unknown(0) TCGA-CA-6717-01 12 113754412 113754412 G A SLC8B1 Silent p.I304I 0.12 TCGA-CA-6717-01 12 113826474 113826474 G A PLBD2 3'UTR 0.22 TCGA-CA-6717-01 12 11461387 11461387 C T PRB4 Missense_Mutation p.R177Q 0.10 tolerated_low_confidence(0.36) unknown(0) TCGA-CA-6717-01 12 114832631 114832631 C A TBX5 Missense_Mutation p.G193V 0.17 tolerated(0.13) possibly_damaging(0.465) TCGA-CA-6717-01 12 11508437 11508437 C A PRB1 Missense_Mutation p.Q17H 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-CA-6717-01 12 11547465 11547465 C A PRB2 Splice_Site p.X22_splice 0.10 TCGA-CA-6717-01 12 116440867 116440867 A G MED13L Missense_Mutation p.V837A 0.12 tolerated(0.76) unknown(0) TCGA-CA-6717-01 12 116444145 116444145 A C MED13L Missense_Mutation p.N770K 0.26 deleterious(0.05) unknown(0) TCGA-CA-6717-01 12 117669823 117669823 A C NOS1 Missense_Mutation p.F1151V 0.08 deleterious(0.02) possibly_damaging(0.651) TCGA-CA-6717-01 12 117749286 117749286 A C NOS1 Nonsense_Mutation p.Y279* 0.12 TCGA-CA-6717-01 12 117768259 117768259 G T NOS1 Missense_Mutation p.L206I 0.29 deleterious_low_confidence(0.04) benign(0.118) TCGA-CA-6717-01 12 11803033 11803033 G T ETV6 5'UTR 0.22 TCGA-CA-6717-01 12 118476185 118476185 T C WSB2 Missense_Mutation p.I190V 0.12 tolerated(1) benign(0.005) TCGA-CA-6717-01 12 118636867 118636867 C T TAOK3 Missense_Mutation p.V395M 0.14 tolerated(0.07) benign(0.06) TCGA-CA-6717-01 12 119866555 119866555 T G CCDC60 Missense_Mutation p.L53R 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 119909851 119909851 G A CCDC60 Missense_Mutation p.E75K 0.22 tolerated(0.26) probably_damaging(0.932) TCGA-CA-6717-01 12 120067653 120067653 C A TMEM233 Missense_Mutation p.S100Y 0.13 tolerated(1) benign(0.009) TCGA-CA-6717-01 12 120195284 120195284 C T CIT Missense_Mutation p.G866E 0.09 tolerated(0.16) possibly_damaging(0.698) TCGA-CA-6717-01 12 120596338 120596338 G A GCN1L1 Missense_Mutation p.S944L 0.12 benign(0.005) TCGA-CA-6717-01 12 120597684 120597684 C T GCN1L1 Silent p.K898K 0.21 TCGA-CA-6717-01 12 120759965 120759965 A C PLA2G1B 3'UTR 0.19 TCGA-CA-6717-01 12 120760095 120760095 G T PLA2G1B Missense_Mutation p.F116L 0.15 deleterious(0.02) benign(0.018) TCGA-CA-6717-01 12 120791170 120791170 A T MSI1 Missense_Mutation p.F222Y 0.14 deleterious(0.04) benign(0) TCGA-CA-6717-01 12 121001676 121001676 G A RNF10 Missense_Mutation p.G532D 0.30 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 12 121002888 121002888 G A RNF10 Missense_Mutation p.R560H 0.18 deleterious(0) benign(0.212) TCGA-CA-6717-01 12 121098024 121098024 C T CABP1 Silent p.F237F 0.16 TCGA-CA-6717-01 12 121132742 121132742 A C MLEC Missense_Mutation p.K177T 0.12 deleterious(0.05) possibly_damaging(0.483) TCGA-CA-6717-01 12 121458637 121458637 G T OASL Silent p.I424I 0.10 TCGA-CA-6717-01 12 121671346 121671346 C T P2RX4 Silent p.D403D 0.13 TCGA-CA-6717-01 12 121768558 121768558 G T ANAPC5 Intron 0.22 TCGA-CA-6717-01 12 12232553 12232553 C T BCL2L14 Missense_Mutation p.S105L 0.09 tolerated(0.27) benign(0.001) TCGA-CA-6717-01 12 122395110 122395110 C A WDR66 Missense_Mutation p.P556T 0.08 tolerated(0.07) benign(0.058) TCGA-CA-6717-01 12 122396368 122396368 C A WDR66 Missense_Mutation p.L641I 0.20 tolerated(0.12) benign(0.145) TCGA-CA-6717-01 12 122396851 122396851 G A WDR66 Missense_Mutation p.A662T 0.17 tolerated(0.39) benign(0.002) TCGA-CA-6717-01 12 122441613 122441613 C T WDR66 Silent p.F1131F 0.13 TCGA-CA-6717-01 12 12247608 12247608 A C BCL2L14 Missense_Mutation p.D230A 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 122618380 122618380 T C MLXIP Silent p.S526S 0.11 TCGA-CA-6717-01 12 122676098 122676098 C T LRRC43 Missense_Mutation p.A358V 0.09 tolerated(0.16) benign(0.012) TCGA-CA-6717-01 12 122690947 122690947 G T B3GNT4 Missense_Mutation p.R50M 0.11 deleterious(0) possibly_damaging(0.635) TCGA-CA-6717-01 12 122709278 122709278 C T DIABLO Intron 0.21 TCGA-CA-6717-01 12 12288130 12288130 G T LRP6 Missense_Mutation p.Q1238K 0.24 tolerated(0.17) benign(0.011) TCGA-CA-6717-01 12 122966095 122966095 G A ZCCHC8 Missense_Mutation p.S331L 0.09 deleterious(0) benign(0.141) TCGA-CA-6717-01 12 12300437 12300437 G A LRP6 Missense_Mutation p.A1087V 0.19 tolerated(0.11) possibly_damaging(0.789) TCGA-CA-6717-01 12 123030789 123030789 A C KNTC1 Missense_Mutation p.N246H 0.18 tolerated(0.08) probably_damaging(0.991) TCGA-CA-6717-01 12 12303777 12303777 C T LRP6 Missense_Mutation p.G996D 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 123070269 123070269 G T KNTC1 Missense_Mutation p.Q1207H 0.08 tolerated(0.34) benign(0.068) TCGA-CA-6717-01 12 123072348 123072348 T G KNTC1 Missense_Mutation p.F1274C 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-CA-6717-01 12 123075943 123075943 T G KNTC1 Silent p.L1396L 0.22 TCGA-CA-6717-01 12 123086106 123086106 G T KNTC1 Missense_Mutation p.M1529I 0.16 tolerated(0.2) possibly_damaging(0.838) TCGA-CA-6717-01 12 123104979 123104979 C A KNTC1 Intron 0.14 TCGA-CA-6717-01 12 123200353 123200353 C T HCAR3 Missense_Mutation p.R311H 0.12 tolerated(0.27) benign(0.015) TCGA-CA-6717-01 12 123200430 123200430 C A HCAR3 Missense_Mutation p.M285I 0.17 tolerated(0.06) probably_damaging(0.995) TCGA-CA-6717-01 12 123253624 123253624 G T DENR Nonstop_Mutation p.*199Lext*2 0.10 TCGA-CA-6717-01 12 123262005 123262005 C A CCDC62 Intron 0.18 TCGA-CA-6717-01 12 123265726 123265726 G T CCDC62 Missense_Mutation p.R82I 0.09 deleterious(0.03) possibly_damaging(0.853) TCGA-CA-6717-01 12 123290844 123290844 T C CCDC62 Splice_Site p.X617_splice 0.11 TCGA-CA-6717-01 12 123353044 123353044 T C VPS37B Missense_Mutation p.I117V 0.12 deleterious(0) probably_damaging(0.963) TCGA-CA-6717-01 12 123485610 123485610 C T PITPNM2 Missense_Mutation p.D382N 0.08 tolerated(0.09) benign(0.103) TCGA-CA-6717-01 12 12356138 12356138 G A LRP6 Missense_Mutation p.R216W 0.33 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 124239011 124239011 C T ATP6V0A2 Silent p.I740I 0.24 TCGA-CA-6717-01 12 124281223 124281223 C A DNAH10 Silent p.I551I 0.10 TCGA-CA-6717-01 12 124293452 124293452 C T DNAH10 Silent p.I914I 0.09 TCGA-CA-6717-01 12 124297962 124297962 G T DNAH10 Missense_Mutation p.K1014N 0.10 benign(0.08) TCGA-CA-6717-01 12 124303702 124303702 G A DNAH10 Missense_Mutation p.R1184Q 0.09 benign(0.003) TCGA-CA-6717-01 12 124305175 124305175 A G DNAH10 Missense_Mutation p.K1232R 0.11 benign(0.001) TCGA-CA-6717-01 12 124305213 124305213 G A DNAH10 Missense_Mutation p.D1245N 0.11 benign(0.021) TCGA-CA-6717-01 12 124317763 124317763 G A DNAH10 Missense_Mutation p.E1432K 0.14 possibly_damaging(0.804) TCGA-CA-6717-01 12 124323139 124323139 G T DNAH10 Missense_Mutation p.R1562I 0.09 probably_damaging(1) TCGA-CA-6717-01 12 124349195 124349195 C A DNAH10 Missense_Mutation p.S2203Y 0.22 probably_damaging(1) TCGA-CA-6717-01 12 124371701 124371701 C A DNAH10 Missense_Mutation p.L2828M 0.07 benign(0.039) TCGA-CA-6717-01 12 124401223 124401223 C T DNAH10 Silent p.L3530L 0.11 TCGA-CA-6717-01 12 124408404 124408404 C A DNAH10 Missense_Mutation p.F3749L 0.12 probably_damaging(0.948) TCGA-CA-6717-01 12 124414972 124414972 C T DNAH10 Silent p.I4094I 0.12 TCGA-CA-6717-01 12 124499058 124499058 T G ZNF664 3'UTR 0.09 TCGA-CA-6717-01 12 124499644 124499644 G T ZNF664 3'UTR 0.17 TCGA-CA-6717-01 12 124819712 124819712 T C NCOR2 Missense_Mutation p.Q2127R 0.12 probably_damaging(0.99) TCGA-CA-6717-01 12 124915272 124915272 C T NCOR2 Missense_Mutation p.R315H 0.15 unknown(0) TCGA-CA-6717-01 12 125296438 125296438 T C SCARB1 Missense_Mutation p.D235G 0.10 deleterious(0) benign(0.162) TCGA-CA-6717-01 12 125587234 125587234 G A AACS Missense_Mutation p.D194N 0.10 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 12 125834391 125834391 A G TMEM132B Missense_Mutation p.D149G 0.10 deleterious(0.04) benign(0.423) TCGA-CA-6717-01 12 126004087 126004087 G T TMEM132B Silent p.P398P 0.17 TCGA-CA-6717-01 12 126139041 126139041 G T TMEM132B Nonsense_Mutation p.E1008* 0.19 TCGA-CA-6717-01 12 126139271 126139271 T C TMEM132B 3'UTR 0.14 TCGA-CA-6717-01 12 12673993 12673993 T G DUSP16 Silent p.R14R 0.11 TCGA-CA-6717-01 12 128899611 128899611 C A TMEM132C Silent p.V140V 0.10 TCGA-CA-6717-01 12 129558533 129558533 T C TMEM132D Missense_Mutation p.N1063D 0.09 tolerated(0.05) benign(0.069) TCGA-CA-6717-01 12 1299155 1299155 A G ERC1 Missense_Mutation p.E763G 0.09 tolerated(0.36) possibly_damaging(0.61) TCGA-CA-6717-01 12 130830316 130830316 G A PIWIL1 Missense_Mutation p.G70E 0.30 deleterious(0.03) probably_damaging(0.991) TCGA-CA-6717-01 12 130830955 130830955 C A PIWIL1 Missense_Mutation p.F119L 0.23 deleterious(0) benign(0.018) TCGA-CA-6717-01 12 130830971 130830971 C T PIWIL1 Missense_Mutation p.P125S 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-CA-6717-01 12 130841538 130841538 G T PIWIL1 Missense_Mutation p.D494Y 0.14 deleterious(0) possibly_damaging(0.885) TCGA-CA-6717-01 12 130898822 130898822 C A RIMBP2 Missense_Mutation p.D834Y 0.17 deleterious(0) possibly_damaging(0.873) TCGA-CA-6717-01 12 132209983 132209983 C T SFSWAP Missense_Mutation p.R214C 0.12 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 12 132212883 132212883 C A SFSWAP Missense_Mutation p.R331S 0.23 deleterious(0.05) possibly_damaging(0.808) TCGA-CA-6717-01 12 132471164 132471164 G T EP400 Nonsense_Mutation p.G679* 0.09 TCGA-CA-6717-01 12 133225553 133225553 G A POLE Nonsense_Mutation p.R1371* 0.22 TCGA-CA-6717-01 12 133226355 133226355 G T POLE Missense_Mutation p.L1235I 0.21 tolerated(0.37) benign(0.005) TCGA-CA-6717-01 12 133433129 133433129 G T CHFR Missense_Mutation p.S397Y 0.19 tolerated(0.09) probably_damaging(0.928) TCGA-CA-6717-01 12 133448961 133448961 T C CHFR Missense_Mutation p.N85D 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 13367498 13367498 A G EMP1 Missense_Mutation p.Y116C 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 133732433 133732433 C A ZNF10 Missense_Mutation p.L201I 0.25 tolerated(0.64) benign(0) TCGA-CA-6717-01 12 133733416 133733416 G T ZNF10 Missense_Mutation p.Q528H 0.21 tolerated(0.17) benign(0.001) TCGA-CA-6717-01 12 13529235 13529235 A C C12orf36 Missense_Mutation p.I35M 0.18 possibly_damaging(0.506) TCGA-CA-6717-01 12 13715742 13715742 A C GRIN2B Missense_Mutation p.L1477R 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 13768523 13768523 A C GRIN2B Missense_Mutation p.I468M 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 13769485 13769485 A T GRIN2B Missense_Mutation p.L411Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 14018806 14018806 C T GRIN2B Missense_Mutation p.D113N 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 14804380 14804380 G T GUCY2C Silent p.I557I 0.09 TCGA-CA-6717-01 12 14928451 14928451 A G H2AFJ 3'UTR 0.13 TCGA-CA-6717-01 12 14929982 14929982 C T H2AFJ 3'UTR 0.25 TCGA-CA-6717-01 12 14976043 14976043 T - C12orf60 Frame_Shift_Del p.F60Lfs*14 0.08 TCGA-CA-6717-01 12 15100816 15100816 A C ARHGDIB Missense_Mutation p.I111M 0.25 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 12 15654583 15654583 C A PTPRO Missense_Mutation p.R231S 0.08 tolerated_low_confidence(0.15) benign(0.009) TCGA-CA-6717-01 12 15704527 15704527 C T PTPRO Missense_Mutation p.A827V 0.18 tolerated(0.1) probably_damaging(0.936) TCGA-CA-6717-01 12 15822392 15822392 G T EPS8 Missense_Mutation p.L149I 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 16052972 16052972 A G STRAP Missense_Mutation p.K304E 0.08 deleterious(0.01) possibly_damaging(0.51) TCGA-CA-6717-01 12 18435012 18435012 A C PIK3C2G 5'UTR 0.19 TCGA-CA-6717-01 12 18443804 18443804 T G PIK3C2G Nonsense_Mutation p.Y259* 0.17 TCGA-CA-6717-01 12 18446936 18446936 G T PIK3C2G Nonsense_Mutation p.E341* 0.13 TCGA-CA-6717-01 12 18715694 18715694 A G PIK3C2G Silent p.T1175T 0.15 TCGA-CA-6717-01 12 18747482 18747482 G T PIK3C2G Nonsense_Mutation p.E1315* 0.08 TCGA-CA-6717-01 12 18841028 18841028 T G PLCZ1 Missense_Mutation p.K529T 0.12 deleterious(0) benign(0.232) TCGA-CA-6717-01 12 18847943 18847943 A G PLCZ1 Silent p.G454G 0.11 TCGA-CA-6717-01 12 18849177 18849177 T C PLCZ1 Missense_Mutation p.R400G 0.13 tolerated(0.12) benign(0.158) TCGA-CA-6717-01 12 18876353 18876353 G T PLCZ1 Missense_Mutation p.L87I 0.17 deleterious(0.01) possibly_damaging(0.764) TCGA-CA-6717-01 12 19285358 19285358 T C PLEKHA5 Silent p.T67T 0.13 TCGA-CA-6717-01 12 19410374 19410374 G A PLEKHA5 Missense_Mutation p.R147Q 0.23 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 12 19436267 19436267 T C PLEKHA5 Missense_Mutation p.I456T 0.29 tolerated(0.14) benign(0.002) TCGA-CA-6717-01 12 19436306 19436306 G T PLEKHA5 Missense_Mutation p.R469I 0.21 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 2024077 2024077 G A CACNA2D4 Silent p.F84F 0.10 TCGA-CA-6717-01 12 20801770 20801770 T G PDE3A Missense_Mutation p.I905S 0.13 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 12 20859013 20859013 G T SLCO1C1 Missense_Mutation p.E134D 0.23 tolerated(0.11) benign(0.102) TCGA-CA-6717-01 12 21036452 21036452 A C SLCO1B3 Missense_Mutation p.K533T 0.13 tolerated(0.26) probably_damaging(0.93) TCGA-CA-6717-01 12 21487622 21487622 C A SLCO1A2 5'UTR 0.18 TCGA-CA-6717-01 12 21526276 21526276 T C IAPP 5'UTR 0.16 TCGA-CA-6717-01 12 21598304 21598304 C T PYROXD1 Silent p.F63F 0.18 TCGA-CA-6717-01 12 21605046 21605046 G T PYROXD1 Missense_Mutation p.R149I 0.17 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 12 21689812 21689812 T G GYS2 3'UTR 0.14 TCGA-CA-6717-01 12 21693372 21693372 T G GYS2 Missense_Mutation p.D594A 0.26 deleterious(0.01) possibly_damaging(0.825) TCGA-CA-6717-01 12 21788476 21788476 T G LDHB Nonstop_Mutation p.*335Cext*7 0.09 TCGA-CA-6717-01 12 21926253 21926253 C T KCNJ8 Missense_Mutation p.D100N 0.32 deleterious(0) possibly_damaging(0.489) TCGA-CA-6717-01 12 21953992 21953992 G A ABCC9 Missense_Mutation p.R1546C 0.19 deleterious(0) possibly_damaging(0.597) TCGA-CA-6717-01 12 22208509 22208509 G A CMAS Missense_Mutation p.R175H 0.30 deleterious(0.04) benign(0.196) TCGA-CA-6717-01 12 22354731 22354731 C T ST8SIA1 Missense_Mutation p.G276R 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 23818415 23818415 G A SOX5 Silent p.F298F 0.22 TCGA-CA-6717-01 12 24736889 24736889 G A LINC00477 RNA 0.16 TCGA-CA-6717-01 12 25232370 25232370 C T LRMP Missense_Mutation p.S37L 0.17 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-CA-6717-01 12 25241038 25241038 C T LRMP Missense_Mutation p.A107V 0.10 tolerated(0.05) possibly_damaging(0.665) TCGA-CA-6717-01 12 25257302 25257302 T C LRMP Silent p.L352L 0.15 TCGA-CA-6717-01 12 25261449 25261449 C A CASC1 3'UTR 0.16 TCGA-CA-6717-01 12 25276160 25276160 C T CASC1 Missense_Mutation p.E355K 0.19 tolerated(0.28) benign(0.023) TCGA-CA-6717-01 12 25297316 25297316 C A CASC1 Missense_Mutation p.D329Y 0.16 deleterious(0.02) benign(0.022) TCGA-CA-6717-01 12 25308340 25308340 C A CASC1 Nonsense_Mutation p.E69* 0.25 TCGA-CA-6717-01 12 25679755 25679755 G T IFLTD1 Missense_Mutation p.S209Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 12 2622085 2622085 C T CACNA1C Missense_Mutation p.T442I 0.11 tolerated(0.05) probably_damaging(0.961) TCGA-CA-6717-01 12 2622092 2622092 C T CACNA1C Silent p.A444A 0.10 TCGA-CA-6717-01 12 26492400 26492400 T G ITPR2 Missense_Mutation p.K2679T 0.12 deleterious(0.01) benign(0.202) TCGA-CA-6717-01 12 26639286 26639286 A C ITPR2 Missense_Mutation p.D1854E 0.19 tolerated(0.52) benign(0.002) TCGA-CA-6717-01 12 26749871 26749871 A C ITPR2 Missense_Mutation p.L1400R 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 12 26753043 26753043 C A ITPR2 Splice_Site p.X1227_splice 0.21 TCGA-CA-6717-01 12 26868324 26868324 C T ITPR2 Missense_Mutation p.E255K 0.21 tolerated(0.08) possibly_damaging(0.791) TCGA-CA-6717-01 12 26875389 26875389 T G ITPR2 Missense_Mutation p.N156H 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-CA-6717-01 12 27089728 27089728 A C ASUN Missense_Mutation p.I3M 0.14 tolerated(1) benign(0.003) TCGA-CA-6717-01 12 27127056 27127056 A C TM7SF3 Missense_Mutation p.L519V 0.23 tolerated(0.1) benign(0.014) TCGA-CA-6717-01 12 27128433 27128433 A C TM7SF3 Silent p.T482T 0.15 TCGA-CA-6717-01 12 27181424 27181424 G T MED21 3'UTR 0.22 TCGA-CA-6717-01 12 27235445 27235445 C T C12orf71 5'UTR 0.08 TCGA-CA-6717-01 12 2742864 2742864 C A CACNA1C Missense_Mutation p.L1320I 0.08 tolerated(0.12) benign(0.001) TCGA-CA-6717-01 12 27554542 27554542 G A ARNTL2 Nonsense_Mutation p.W451* 0.13 TCGA-CA-6717-01 12 27568801 27568801 G T ARNTL2 Splice_Site p.X529_splice 0.08 TCGA-CA-6717-01 12 27849452 27849452 C T REP15 5'UTR 0.36 TCGA-CA-6717-01 12 280464 280464 G T IQSEC3 Intron 0.11 TCGA-CA-6717-01 12 28116165 28116165 G A PTHLH Intron 0.29 TCGA-CA-6717-01 12 29598318 29598318 C A OVCH1 Missense_Mutation p.R925I 0.13 tolerated(0.21) benign(0.092) TCGA-CA-6717-01 12 29631797 29631797 G T OVCH1 Missense_Mutation p.S347Y 0.10 deleterious(0) possibly_damaging(0.864) TCGA-CA-6717-01 12 3000085 3000085 A C TULP3 5'UTR 0.22 TCGA-CA-6717-01 12 30815299 30815299 C A IPO8 Nonsense_Mutation p.E573* 0.12 TCGA-CA-6717-01 12 30815408 30815408 C A IPO8 Missense_Mutation p.M536I 0.16 tolerated(0.98) benign(0) TCGA-CA-6717-01 12 30869559 30869559 C A CAPRIN2 Nonsense_Mutation p.E734* 0.11 TCGA-CA-6717-01 12 30887963 30887963 C A CAPRIN2 Nonsense_Mutation p.E250* 0.16 TCGA-CA-6717-01 12 30894029 30894029 C A CAPRIN2 Missense_Mutation p.E165D 0.17 deleterious(0.04) benign(0.008) TCGA-CA-6717-01 12 30906325 30906325 C A CAPRIN2 Nonsense_Mutation p.G125* 0.14 TCGA-CA-6717-01 12 30906661 30906661 C T CAPRIN2 Missense_Mutation p.E13K 0.11 deleterious_low_confidence(0.03) benign(0.003) TCGA-CA-6717-01 12 31440633 31440633 T G FAM60A Silent p.T147T 0.10 TCGA-CA-6717-01 12 31540574 31540574 A G DENND5B Missense_Mutation p.V1263A 0.09 tolerated(0.08) benign(0.045) TCGA-CA-6717-01 12 31632613 31632613 G A DENND5B Missense_Mutation p.R272W 0.28 tolerated(0.1) benign(0.015) TCGA-CA-6717-01 12 32134085 32134085 A G KIAA1551 Missense_Mutation p.I66V 0.15 tolerated(0.38) benign(0.009) TCGA-CA-6717-01 12 32136429 32136429 A G KIAA1551 Missense_Mutation p.N847S 0.12 tolerated(0.37) benign(0.307) TCGA-CA-6717-01 12 32137007 32137007 G T KIAA1551 Nonsense_Mutation p.E1040* 0.31 TCGA-CA-6717-01 12 32145333 32145333 C T KIAA1551 Missense_Mutation p.S1703L 0.11 tolerated(0.65) benign(0.035) TCGA-CA-6717-01 12 32735005 32735005 C A FGD4 Silent p.S68S 0.11 TCGA-CA-6717-01 12 32861117 32861117 G T DNM1L Nonsense_Mutation p.E110* 0.19 TCGA-CA-6717-01 12 34179323 34179323 C A ALG10 Missense_Mutation p.L299I 0.18 deleterious(0.03) benign(0.038) TCGA-CA-6717-01 12 39087470 39087470 C T CPNE8 Missense_Mutation p.E378K 0.09 deleterious(0) benign(0.419) TCGA-CA-6717-01 12 39242421 39242421 A C CPNE8 Missense_Mutation p.F77C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 3938117 3938117 G T PARP11 Missense_Mutation p.S76Y 0.18 deleterious(0.02) benign(0.193) TCGA-CA-6717-01 12 39696882 39696882 T G KIF21A Missense_Mutation p.E1539A 0.08 tolerated(0.08) probably_damaging(0.985) TCGA-CA-6717-01 12 39696939 39696939 T G KIF21A Splice_Site p.X1521_splice 0.11 TCGA-CA-6717-01 12 39701482 39701482 G A KIF21A Nonsense_Mutation p.R1443* 0.18 TCGA-CA-6717-01 12 39750644 39750644 C T KIF21A Missense_Mutation p.E487K 0.19 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 12 39947917 39947917 A C ABCD2 Missense_Mutation p.L674V 0.09 tolerated(0.22) benign(0.161) TCGA-CA-6717-01 12 39947923 39947923 T G ABCD2 Missense_Mutation p.T672P 0.10 deleterious(0) possibly_damaging(0.824) TCGA-CA-6717-01 12 39967572 39967572 G A ABCD2 Missense_Mutation p.A650V 0.18 tolerated(0.15) benign(0.059) TCGA-CA-6717-01 12 40012525 40012525 C A ABCD2 Missense_Mutation p.R298I 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 40037632 40037632 T G C12orf40 Missense_Mutation p.L39V 0.10 tolerated(0.15) benign(0.22) TCGA-CA-6717-01 12 40076611 40076611 T G C12orf40 Missense_Mutation p.N295K 0.09 tolerated(0.08) benign(0.133) TCGA-CA-6717-01 12 40085879 40085879 C A C12orf40 Missense_Mutation p.S459Y 0.12 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6717-01 12 40115043 40115043 A C C12orf40 Missense_Mutation p.K650T 0.25 tolerated(0.29) benign(0.033) TCGA-CA-6717-01 12 40637360 40637360 G A LRRK2 Missense_Mutation p.V239M 0.09 deleterious(0.01) possibly_damaging(0.824) TCGA-CA-6717-01 12 40645077 40645077 G T LRRK2 Missense_Mutation p.E334D 0.08 tolerated(0.32) benign(0.004) TCGA-CA-6717-01 12 40668462 40668462 G T LRRK2 Missense_Mutation p.E578D 0.20 tolerated(0.79) benign(0.144) TCGA-CA-6717-01 12 40689346 40689346 C T LRRK2 Missense_Mutation p.A999V 0.20 tolerated(0.18) possibly_damaging(0.61) TCGA-CA-6717-01 12 40704434 40704434 G A LRRK2 Missense_Mutation p.E1507K 0.09 deleterious(0.05) probably_damaging(0.997) TCGA-CA-6717-01 12 40716218 40716218 A G LRRK2 Silent p.E1805E 0.20 TCGA-CA-6717-01 12 40716274 40716274 A C LRRK2 Missense_Mutation p.K1824T 0.11 deleterious(0.03) possibly_damaging(0.759) TCGA-CA-6717-01 12 41323714 41323714 G A CNTN1 Missense_Mutation p.D205N 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 41337946 41337946 A G CNTN1 Missense_Mutation p.N553D 0.15 tolerated(0.38) benign(0.012) TCGA-CA-6717-01 12 41352944 41352944 G A CNTN1 Missense_Mutation p.R571Q 0.12 tolerated(0.2) benign(0.166) TCGA-CA-6717-01 12 41418961 41418961 T C CNTN1 Missense_Mutation p.W845R 0.20 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 12 41957374 41957374 C T PDZRN4 Nonsense_Mutation p.R464* 0.10 TCGA-CA-6717-01 12 41961654 41961654 G T PDZRN4 Nonsense_Mutation p.E513* 0.14 TCGA-CA-6717-01 12 41966268 41966268 C T PDZRN4 Nonsense_Mutation p.R563* 0.15 TCGA-CA-6717-01 12 43769205 43769205 T C ADAMTS20 Missense_Mutation p.D1808G 0.18 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 12 438026 438026 C T KDM5A Missense_Mutation p.R648Q 0.12 tolerated(0.15) benign(0.024) TCGA-CA-6717-01 12 43822185 43822185 G A ADAMTS20 Silent p.S1268S 0.10 TCGA-CA-6717-01 12 43822538 43822538 C A ADAMTS20 Missense_Mutation p.R1185I 0.09 tolerated(0.08) benign(0.257) TCGA-CA-6717-01 12 43846403 43846403 T C ADAMTS20 Missense_Mutation p.E619G 0.10 deleterious(0.02) benign(0.22) TCGA-CA-6717-01 12 43847824 43847824 T C ADAMTS20 Missense_Mutation p.E549G 0.14 deleterious(0) possibly_damaging(0.687) TCGA-CA-6717-01 12 4385254 4385254 T G CCND2 Silent p.T93T 0.11 TCGA-CA-6717-01 12 43884201 43884201 A G ADAMTS20 Silent p.L372L 0.08 TCGA-CA-6717-01 12 44124290 44124290 C T PUS7L Silent p.T665T 0.10 TCGA-CA-6717-01 12 44148269 44148269 T G PUS7L Missense_Mutation p.K260N 0.19 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 12 44238445 44238445 G A TMEM117 5'UTR 0.15 TCGA-CA-6717-01 12 44238539 44238539 A C TMEM117 Missense_Mutation p.I29L 0.24 tolerated(0.13) benign(0.005) TCGA-CA-6717-01 12 44238705 44238705 A C TMEM117 Missense_Mutation p.K84T 0.15 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 12 44693370 44693370 C A TMEM117 Missense_Mutation p.L206I 0.10 tolerated(0.08) probably_damaging(0.978) TCGA-CA-6717-01 12 44781912 44781912 C T TMEM117 Silent p.I334I 0.19 TCGA-CA-6717-01 12 45097554 45097554 G A NELL2 Nonsense_Mutation p.R475* 0.09 TCGA-CA-6717-01 12 45168539 45168539 C A NELL2 Nonsense_Mutation p.E379* 0.19 TCGA-CA-6717-01 12 45410347 45410347 C A DBX2 Nonsense_Mutation p.E248* 0.21 TCGA-CA-6717-01 12 45567322 45567322 G A PLEKHA8P1 RNA 0.27 TCGA-CA-6717-01 12 46230691 46230691 C T ARID2 Missense_Mutation p.R314C 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 12 46231359 46231359 A G ARID2 Missense_Mutation p.Y400C 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 12 46245107 46245107 A G ARID2 Silent p.K1067K 0.27 TCGA-CA-6717-01 12 46245344 46245344 G A ARID2 Silent p.S1146S 0.10 TCGA-CA-6717-01 12 4627367 4627367 T G C12orf4 Missense_Mutation p.D297A 0.11 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 12 46315878 46315878 T G SCAF11 Missense_Mutation p.K1449Q 0.09 deleterious(0.02) possibly_damaging(0.54) TCGA-CA-6717-01 12 46316863 46316863 T C SCAF11 Silent p.G1327G 0.08 TCGA-CA-6717-01 12 46328032 46328032 T C SCAF11 Missense_Mutation p.R187G 0.12 tolerated(0.06) benign(0.012) TCGA-CA-6717-01 12 4634664 4634664 A C C12orf4 Missense_Mutation p.F198V 0.10 deleterious(0) possibly_damaging(0.683) TCGA-CA-6717-01 12 46598128 46598128 T G SLC38A1 Missense_Mutation p.N260H 0.08 tolerated(0.28) benign(0.001) TCGA-CA-6717-01 12 46601349 46601349 G A SLC38A1 Silent p.F148F 0.23 TCGA-CA-6717-01 12 4665585 4665585 C A RAD51AP1 Missense_Mutation p.S280Y 0.15 tolerated(0.33) benign(0.009) TCGA-CA-6717-01 12 47178401 47178401 T G SLC38A4 Missense_Mutation p.E139D 0.25 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 4736009 4736009 A G AKAP3 Missense_Mutation p.S687P 0.17 tolerated(0.16) probably_damaging(0.999) TCGA-CA-6717-01 12 47629950 47629950 C T PCED1B Silent p.F368F 0.14 TCGA-CA-6717-01 12 48095371 48095371 C T RPAP3 Missense_Mutation p.R57Q 0.18 deleterious(0) benign(0.043) TCGA-CA-6717-01 12 48110786 48110786 C A ENDOU Missense_Mutation p.E146D 0.17 deleterious(0.04) probably_damaging(0.994) TCGA-CA-6717-01 12 48111930 48111930 C T ENDOU Missense_Mutation p.E76K 0.20 tolerated(0.21) benign(0.008) TCGA-CA-6717-01 12 48393801 48393801 C T COL2A1 Missense_Mutation p.D65N 0.11 unknown(0) TCGA-CA-6717-01 12 48919898 48919898 C A OR8S1 Missense_Mutation p.L162I 0.11 deleterious(0.05) benign(0.347) TCGA-CA-6717-01 12 49089558 49089558 C T CCNT1 Missense_Mutation p.R254H 0.11 deleterious(0.02) possibly_damaging(0.662) TCGA-CA-6717-01 12 4922164 4922164 A G KCNA6 3'UTR 0.19 TCGA-CA-6717-01 12 49224127 49224127 T C DDX23 3'UTR 0.34 TCGA-CA-6717-01 12 49227130 49227130 T C DDX23 Missense_Mutation p.D578G 0.10 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 12 4922829 4922829 G T KCNA6 3'UTR 0.32 TCGA-CA-6717-01 12 49298128 49298128 G A CCDC65 Silent p.K3K 0.25 TCGA-CA-6717-01 12 49364343 49364343 C T WNT10B 5'UTR 0.10 TCGA-CA-6717-01 12 49415884 49415884 A G KMT2D Missense_Mutation p.F5488S 0.15 unknown(0) TCGA-CA-6717-01 12 49425073 49425073 A G KMT2D Missense_Mutation p.V4472A 0.17 unknown(0) TCGA-CA-6717-01 12 49438283 49438283 G A KMT2D Silent p.C1662C 0.09 TCGA-CA-6717-01 12 49523033 49523033 G A TUBA1B Missense_Mutation p.R123C 0.26 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-CA-6717-01 12 49578753 49578753 A C TUBA1A 3'UTR 0.24 TCGA-CA-6717-01 12 49579584 49579584 G T TUBA1A Missense_Mutation p.L189I 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.903) TCGA-CA-6717-01 12 49729873 49729873 C T C1QL4 Missense_Mutation p.D130N 0.14 deleterious(0.01) possibly_damaging(0.74) TCGA-CA-6717-01 12 49949581 49949581 G A KCNH3 Missense_Mutation p.R772Q 0.24 tolerated(0.24) benign(0) TCGA-CA-6717-01 12 50024337 50024337 G A PRPF40B Missense_Mutation p.D5N 0.15 tolerated_low_confidence(0.19) unknown(0) TCGA-CA-6717-01 12 50027319 50027319 A C PRPF40B Missense_Mutation p.D190A 0.13 tolerated(0.15) benign(0.182) TCGA-CA-6717-01 12 5021058 5021058 G A KCNA1 Missense_Mutation p.V172I 0.21 tolerated(0.29) benign(0) TCGA-CA-6717-01 12 5022487 5022487 G A KCNA1 3'UTR 0.19 TCGA-CA-6717-01 12 50232588 50232588 A G BCDIN3D Missense_Mutation p.F149L 0.08 deleterious(0.01) benign(0.134) TCGA-CA-6717-01 12 5025232 5025232 A G KCNA1 3'UTR 0.11 TCGA-CA-6717-01 12 5025558 5025558 G T KCNA1 3'UTR 0.17 TCGA-CA-6717-01 12 5025824 5025824 G A KCNA1 3'UTR 0.16 TCGA-CA-6717-01 12 5026390 5026390 A C KCNA1 3'UTR 0.17 TCGA-CA-6717-01 12 50355846 50355846 G A AQP5 Missense_Mutation p.A16T 0.27 tolerated(0.05) benign(0.04) TCGA-CA-6717-01 12 50524462 50524462 G A CERS5 Missense_Mutation p.R349C 0.22 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 12 50725589 50725589 C A FAM186A Nonsense_Mutation p.E2238* 0.21 TCGA-CA-6717-01 12 50747096 50747096 A G FAM186A Silent p.P1173P 0.16 TCGA-CA-6717-01 12 50747749 50747749 A C FAM186A Missense_Mutation p.L956V 0.15 tolerated(0.06) benign(0.233) TCGA-CA-6717-01 12 50749621 50749621 G A FAM186A Nonsense_Mutation p.R332* 0.24 TCGA-CA-6717-01 12 50829365 50829365 A C LARP4 Missense_Mutation p.K165Q 0.19 deleterious(0.05) probably_damaging(0.978) TCGA-CA-6717-01 12 51108261 51108261 A G DIP2B Silent p.G911G 0.09 TCGA-CA-6717-01 12 51207793 51207793 T G ATF1 Missense_Mutation p.I110S 0.22 tolerated(0.05) benign(0.08) TCGA-CA-6717-01 12 51319290 51319290 C A METTL7A Missense_Mutation p.L157I 0.28 deleterious(0.01) probably_damaging(0.941) TCGA-CA-6717-01 12 51585515 51585515 T G POU6F1 Missense_Mutation p.I142L 0.15 tolerated(0.08) benign(0.394) TCGA-CA-6717-01 12 51851229 51851229 G T SLC4A8 Missense_Mutation p.Q223H 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 12 52159697 52159697 C A SCN8A Silent p.V929V 0.11 TCGA-CA-6717-01 12 52380695 52380695 T G ACVR1B Nonsense_Mutation p.Y451* 0.20 TCGA-CA-6717-01 12 52385715 52385715 C T ACVR1B Nonsense_Mutation p.R485* 0.19 TCGA-CA-6717-01 12 52699164 52699164 G T KRT86 Missense_Mutation p.E292D 0.18 tolerated(0.13) probably_damaging(0.994) TCGA-CA-6717-01 12 52788879 52788879 G A KRT82 Silent p.I474I 0.08 TCGA-CA-6717-01 12 52799842 52799842 T C KRT82 Missense_Mutation p.T74A 0.13 tolerated(0.53) unknown(0) TCGA-CA-6717-01 12 52841151 52841151 G A KRT6B Silent p.G506G 0.15 TCGA-CA-6717-01 12 52843391 52843391 G T KRT6B Silent p.I313I 0.12 TCGA-CA-6717-01 12 52843583 52843583 G T KRT6B Missense_Mutation p.L291I 0.11 deleterious(0.01) probably_damaging(0.968) TCGA-CA-6717-01 12 52865224 52865224 A C KRT6C Missense_Mutation p.L298R 0.11 deleterious(0.02) probably_damaging(0.985) TCGA-CA-6717-01 12 52886447 52886447 A G KRT6A Missense_Mutation p.S176P 0.22 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 12 52886472 52886472 G T KRT6A Silent p.I167I 0.18 TCGA-CA-6717-01 12 52943975 52943975 A C KRT71 Missense_Mutation p.L165R 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 52965163 52965163 G A KRT74 Missense_Mutation p.L275F 0.15 tolerated(0.42) benign(0.074) TCGA-CA-6717-01 12 52985321 52985321 G A KRT72 Missense_Mutation p.A297V 0.20 deleterious(0) benign(0.122) TCGA-CA-6717-01 12 52992684 52992684 C A KRT72 Missense_Mutation p.K213N 0.20 tolerated(0.4) benign(0.059) TCGA-CA-6717-01 12 53042829 53042829 T C KRT2 Missense_Mutation p.N307D 0.10 tolerated(0.61) possibly_damaging(0.647) TCGA-CA-6717-01 12 53068988 53068988 C T KRT1 Missense_Mutation p.V642I 0.15 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 12 53072456 53072456 T G KRT1 Missense_Mutation p.N226H 0.11 deleterious(0.02) probably_damaging(0.961) TCGA-CA-6717-01 12 53089556 53089556 C T KRT77 Silent p.T305T 0.14 TCGA-CA-6717-01 12 53091588 53091588 C T KRT77 Silent p.E212E 0.13 TCGA-CA-6717-01 12 53185554 53185554 C A KRT3 Missense_Mutation p.R412I 0.22 deleterious(0) probably_damaging(0.968) TCGA-CA-6717-01 12 53187002 53187002 T C KRT3 Missense_Mutation p.E291G 0.13 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 12 53586117 53586117 C A ITGB7 Nonsense_Mutation p.E718* 0.17 TCGA-CA-6717-01 12 53594215 53594215 G A ITGB7 Missense_Mutation p.P5S 0.21 tolerated_low_confidence(1) benign(0) TCGA-CA-6717-01 12 53671311 53671311 A G ESPL1 Missense_Mutation p.N715D 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 53700022 53700022 T A C12orf10 Missense_Mutation p.F228Y 0.08 deleterious(0.01) probably_damaging(0.985) TCGA-CA-6717-01 12 53898557 53898557 G T TARBP2 Nonsense_Mutation p.E191* 0.21 TCGA-CA-6717-01 12 54338877 54338877 A C HOXC13 Missense_Mutation p.K277T 0.21 deleterious(0) possibly_damaging(0.795) TCGA-CA-6717-01 12 54367139 54367139 T G HOXC11 Silent p.T38T 0.21 TCGA-CA-6717-01 12 54385622 54385622 C T RP11-834C11.12 Intron 0.11 TCGA-CA-6717-01 12 54676638 54676638 A G HNRNPA1 Missense_Mutation p.Y244C 0.11 tolerated(0.08) unknown(0) TCGA-CA-6717-01 12 54686620 54686620 C T NFE2 Silent p.G220G 0.15 TCGA-CA-6717-01 12 54765326 54765326 G A ZNF385A Missense_Mutation p.R199W 0.24 deleterious(0) possibly_damaging(0.9) TCGA-CA-6717-01 12 54778219 54778219 T C ZNF385A Missense_Mutation p.Y47C 0.12 deleterious(0) possibly_damaging(0.774) TCGA-CA-6717-01 12 54911624 54911624 A G NCKAP1L Missense_Mutation p.I414V 0.09 deleterious(0.02) benign(0.005) TCGA-CA-6717-01 12 54925334 54925334 G A NCKAP1L Silent p.P888P 0.10 TCGA-CA-6717-01 12 55423273 55423273 T C NEUROD4 3'UTR 0.24 TCGA-CA-6717-01 12 55524481 55524481 C A OR9K2 Missense_Mutation p.P310H 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 55615133 55615133 A C OR10A7 Missense_Mutation p.S109R 0.08 tolerated(0.42) possibly_damaging(0.501) TCGA-CA-6717-01 12 55641569 55641569 C A OR6C74 Missense_Mutation p.F166L 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CA-6717-01 12 55641651 55641651 G T OR6C74 Nonsense_Mutation p.E194* 0.10 TCGA-CA-6717-01 12 55641680 55641680 G A OR6C74 Silent p.L203L 0.11 TCGA-CA-6717-01 12 55641777 55641777 T G OR6C74 Missense_Mutation p.F236V 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CA-6717-01 12 55688082 55688082 C A OR6C6 Missense_Mutation p.R312I 0.10 deleterious_low_confidence(0.03) benign(0.002) TCGA-CA-6717-01 12 55688776 55688776 T G OR6C6 Missense_Mutation p.I81L 0.09 tolerated_low_confidence(0.22) benign(0.002) TCGA-CA-6717-01 12 55725679 55725679 C T OR6C3 Silent p.F65F 0.18 TCGA-CA-6717-01 12 55759820 55759820 C A OR6C75 Missense_Mutation p.S309Y 0.20 tolerated_low_confidence(1) benign(0.002) TCGA-CA-6717-01 12 55794646 55794646 C A OR6C65 Missense_Mutation p.L112I 0.24 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-CA-6717-01 12 55887081 55887081 C T OR6C68 Missense_Mutation p.A307V 0.16 tolerated_low_confidence(0.28) benign(0.003) TCGA-CA-6717-01 12 56030726 56030726 C A OR10P1 Missense_Mutation p.F17L 0.24 deleterious(0.04) possibly_damaging(0.64) TCGA-CA-6717-01 12 56092570 56092570 C T ITGA7 Missense_Mutation p.E312K 0.20 tolerated(0.06) benign(0.111) TCGA-CA-6717-01 12 56096710 56096710 C A ITGA7 Missense_Mutation p.E120D 0.14 tolerated(0.1) probably_damaging(0.972) TCGA-CA-6717-01 12 56109941 56109941 G T BLOC1S1 Nonsense_Mutation p.E36* 0.17 TCGA-CA-6717-01 12 56212843 56212843 A G ORMDL2 Silent p.R20R 0.08 TCGA-CA-6717-01 12 56230985 56230985 C T MMP19 Silent p.Q454Q 0.23 TCGA-CA-6717-01 12 56478898 56478898 C T ERBB3 Silent p.F118F 0.37 TCGA-CA-6717-01 12 56522457 56522457 A C ESYT1 Missense_Mutation p.K118N 0.19 tolerated(0.43) benign(0.062) TCGA-CA-6717-01 12 56532788 56532788 A G ESYT1 Silent p.L871L 0.22 TCGA-CA-6717-01 12 56630938 56630938 C A SLC39A5 Missense_Mutation p.D431E 0.32 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 5674779 5674779 G A ANO2 Missense_Mutation p.S891L 0.17 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 57000068 57000068 T G BAZ2A Missense_Mutation p.K743T 0.14 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 12 57066752 57066752 A G PTGES3 Missense_Mutation p.S34P 0.09 tolerated(0.08) possibly_damaging(0.696) TCGA-CA-6717-01 12 57106304 57106304 A C NACA 3'UTR 0.14 TCGA-CA-6717-01 12 57390336 57390336 T G GPR182 3'UTR 0.13 TCGA-CA-6717-01 12 57398534 57398534 C A ZBTB39 Missense_Mutation p.Q56H 0.09 tolerated(0.17) probably_damaging(0.997) TCGA-CA-6717-01 12 57463090 57463090 C A TMEM194A Splice_Site p.X158_splice 0.11 TCGA-CA-6717-01 12 57548011 57548011 G A LRP1 Missense_Mutation p.D288N 0.17 possibly_damaging(0.851) TCGA-CA-6717-01 12 57619422 57619422 C A NXPH4 Silent p.P273P 0.23 TCGA-CA-6717-01 12 57892319 57892319 A C MARS Missense_Mutation p.K335T 0.12 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 12 57906046 57906046 G T MARS Missense_Mutation p.D555Y 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 57910367 57910367 G T MARS 3'UTR 0.24 TCGA-CA-6717-01 12 58006741 58006741 G A ARHGEF25 Silent p.G81G 0.25 TCGA-CA-6717-01 12 58140003 58140003 C A TSPAN31 Silent p.I92I 0.11 TCGA-CA-6717-01 12 58200249 58200249 T G AVIL Missense_Mutation p.K522T 0.20 tolerated(0.18) benign(0.044) TCGA-CA-6717-01 12 58223306 58223306 G A CTDSP2 Silent p.R46R 0.11 TCGA-CA-6717-01 12 5853391 5853391 G A ANO2 Missense_Mutation p.T424I 0.17 tolerated(0.14) probably_damaging(0.999) TCGA-CA-6717-01 12 59274632 59274632 A G LRIG3 Missense_Mutation p.I511T 0.09 deleterious(0) possibly_damaging(0.575) TCGA-CA-6717-01 12 60168877 60168877 C A SLC16A7 Missense_Mutation p.F267L 0.27 tolerated(0.14) probably_damaging(0.999) TCGA-CA-6717-01 12 60173257 60173257 G A SLC16A7 Missense_Mutation p.A412T 0.13 tolerated(0.2) benign(0.009) TCGA-CA-6717-01 12 6055341 6055341 C T ANO2 5'UTR 0.23 TCGA-CA-6717-01 12 6058077 6058077 C T VWF 3'UTR 0.30 TCGA-CA-6717-01 12 6085323 6085323 C T VWF Missense_Mutation p.R2464H 0.11 tolerated(0.67) probably_damaging(0.954) TCGA-CA-6717-01 12 6105278 6105278 C A VWF Nonsense_Mutation p.E1985* 0.24 TCGA-CA-6717-01 12 6134775 6134775 T G VWF Missense_Mutation p.S1065R 0.07 deleterious(0.01) probably_damaging(0.985) TCGA-CA-6717-01 12 62696652 62696652 T G USP15 Missense_Mutation p.L100R 0.14 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 62785027 62785027 T G USP15 Missense_Mutation p.V684G 0.11 tolerated(0.4) benign(0.01) TCGA-CA-6717-01 12 62954658 62954658 T G MON2 Missense_Mutation p.F1266C 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-CA-6717-01 12 62954849 62954849 A G MON2 Missense_Mutation p.S1330G 0.10 deleterious(0.01) benign(0.098) TCGA-CA-6717-01 12 62981919 62981919 A C MON2 Missense_Mutation p.K1658T 0.11 deleterious(0) probably_damaging(0.931) TCGA-CA-6717-01 12 63541157 63541157 G T AVPR1A Missense_Mutation p.F413L 0.10 tolerated_low_confidence(0.11) possibly_damaging(0.686) TCGA-CA-6717-01 12 64196001 64196001 T G TMEM5 Missense_Mutation p.L187V 0.21 deleterious(0) probably_damaging(0.919) TCGA-CA-6717-01 12 6435613 6435613 A C PLEKHG6 Missense_Mutation p.K515T 0.15 deleterious(0) possibly_damaging(0.776) TCGA-CA-6717-01 12 64456869 64456869 C T SRGAP1 Missense_Mutation p.A325V 0.19 tolerated(0.73) benign(0.014) TCGA-CA-6717-01 12 64664340 64664340 C A C12orf56 Missense_Mutation p.R420M 0.19 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 12 64679749 64679749 C T C12orf56 Missense_Mutation p.R242K 0.13 deleterious(0.03) possibly_damaging(0.799) TCGA-CA-6717-01 12 64814261 64814261 G C XPOT Missense_Mutation p.C268S 0.18 tolerated(0.27) benign(0.011) TCGA-CA-6717-01 12 64824069 64824069 T C XPOT Splice_Site p.X659_splice 0.10 TCGA-CA-6717-01 12 65564501 65564501 G T LEMD3 Missense_Mutation p.M375I 0.21 tolerated(0.37) benign(0) TCGA-CA-6717-01 12 65720631 65720631 T G MSRB3 Missense_Mutation p.C41W 0.11 tolerated(0.46) benign(0.008) TCGA-CA-6717-01 12 65847554 65847554 C A MSRB3 Missense_Mutation p.F120L 0.13 tolerated(1) benign(0.003) TCGA-CA-6717-01 12 65856989 65856989 A G MSRB3 Missense_Mutation p.R156G 0.11 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 12 6650753 6650753 T C IFFO1 Missense_Mutation p.E504G 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 12 66522685 66522685 C A LLPH Missense_Mutation p.D68Y 0.21 deleterious(0.01) probably_damaging(0.935) TCGA-CA-6717-01 12 66641740 66641740 G T IRAK3 Missense_Mutation p.R527I 0.24 tolerated_low_confidence(0.09) benign(0.003) TCGA-CA-6717-01 12 66698761 66698761 A G HELB Silent p.T146T 0.11 TCGA-CA-6717-01 12 66718791 66718791 G T HELB Missense_Mutation p.R852I 0.22 tolerated(0.12) benign(0.213) TCGA-CA-6717-01 12 66742733 66742733 G T GRIP1 3'UTR 0.21 TCGA-CA-6717-01 12 66765581 66765581 G A GRIP1 Missense_Mutation p.R917W 0.22 tolerated(0.05) benign(0.033) TCGA-CA-6717-01 12 6692411 6692411 C A CHD4 Missense_Mutation p.R1338I 0.26 deleterious(0) probably_damaging(0.928) TCGA-CA-6717-01 12 6692442 6692442 C T CHD4 Missense_Mutation p.D1328N 0.08 deleterious(0) probably_damaging(0.945) TCGA-CA-6717-01 12 6707237 6707237 C T CHD4 Missense_Mutation p.R572Q 0.07 deleterious(0) possibly_damaging(0.857) TCGA-CA-6717-01 12 6753354 6753354 A G ACRBP Missense_Mutation p.M298T 0.15 tolerated(0.15) benign(0.004) TCGA-CA-6717-01 12 67699814 67699814 C T CAND1 Missense_Mutation p.A789V 0.36 tolerated(0.2) benign(0.039) TCGA-CA-6717-01 12 68050891 68050891 C T DYRK2 Silent p.G68G 0.19 TCGA-CA-6717-01 12 68056392 68056392 T G DYRK2 3'UTR 0.17 TCGA-CA-6717-01 12 68534 68534 G T RP11-598F7.1 RNA 0.07 TCGA-CA-6717-01 12 68595639 68595639 C T IL26 Missense_Mutation p.E168K 0.15 tolerated(0.06) benign(0.341) TCGA-CA-6717-01 12 69094533 69094533 C T NUP107 Nonsense_Mutation p.R194* 0.20 TCGA-CA-6717-01 12 69103052 69103052 C T NUP107 Missense_Mutation p.A255V 0.26 tolerated(0.29) benign(0.041) TCGA-CA-6717-01 12 69124999 69124999 T G NUP107 Missense_Mutation p.F615C 0.09 tolerated(0.2) benign(0.005) TCGA-CA-6717-01 12 69264029 69264029 G A CPM Silent p.L194L 0.20 TCGA-CA-6717-01 12 6950466 6950466 G A GNB3 Silent p.E5E 0.27 TCGA-CA-6717-01 12 69666959 69666959 C A CPSF6 3'UTR 0.18 TCGA-CA-6717-01 12 69746944 69746944 G T LYZ Missense_Mutation p.R131I 0.23 deleterious(0.03) benign(0.005) TCGA-CA-6717-01 12 69991458 69991458 A C CCT2 Missense_Mutation p.Q381H 0.16 tolerated(0.52) benign(0.051) TCGA-CA-6717-01 12 70049487 70049487 C T BEST3 Missense_Mutation p.E403K 0.18 deleterious(0.02) benign(0.409) TCGA-CA-6717-01 12 7022161 7022161 G T LRRC23 Missense_Mutation p.L342F 0.25 tolerated_low_confidence(0.16) benign(0.026) TCGA-CA-6717-01 12 70960313 70960313 T G PTPRB Missense_Mutation p.K1269T 0.20 tolerated(0.22) benign(0.259) TCGA-CA-6717-01 12 70983775 70983775 C A PTPRB Missense_Mutation p.L673F 0.30 tolerated(0.05) benign(0.159) TCGA-CA-6717-01 12 7169853 7169853 A C C1S Missense_Mutation p.N27T 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-CA-6717-01 12 71977435 71977435 A C LGR5 Missense_Mutation p.K549Q 0.22 deleterious(0.04) benign(0.382) TCGA-CA-6717-01 12 72013836 72013836 T C ZFC3H1 Missense_Mutation p.E1640G 0.18 tolerated(0.11) benign(0.009) TCGA-CA-6717-01 12 72051054 72051054 C A ZFC3H1 Missense_Mutation p.R209I 0.35 deleterious(0) benign(0.308) TCGA-CA-6717-01 12 72056908 72056908 T C ZFC3H1 Silent p.R161R 0.26 TCGA-CA-6717-01 12 72057069 72057069 C A ZFC3H1 Nonsense_Mutation p.E108* 0.16 TCGA-CA-6717-01 12 72080571 72080571 G T TMEM19 Missense_Mutation p.M37I 0.21 tolerated(0.69) benign(0.107) TCGA-CA-6717-01 12 72969064 72969064 G T TRHDE Nonsense_Mutation p.G676* 0.21 TCGA-CA-6717-01 12 72969300 72969300 G A TRHDE Missense_Mutation p.D722N 0.25 tolerated(0.06) probably_damaging(0.964) TCGA-CA-6717-01 12 73046121 73046121 G T TRHDE Missense_Mutation p.D854Y 0.28 deleterious(0.03) possibly_damaging(0.582) TCGA-CA-6717-01 12 7360671 7360671 G A PEX5 Silent p.L407L 0.10 TCGA-CA-6717-01 12 7459175 7459175 A C ACSM4 Missense_Mutation p.K83T 0.23 tolerated(0.13) benign(0.005) TCGA-CA-6717-01 12 7473381 7473381 G A ACSM4 Missense_Mutation p.V328M 0.17 deleterious(0.02) probably_damaging(0.986) TCGA-CA-6717-01 12 7480898 7480898 G T ACSM4 Nonsense_Mutation p.E558* 0.23 TCGA-CA-6717-01 12 74932996 74932996 T C ATXN7L3B 3'UTR 0.14 TCGA-CA-6717-01 12 74934250 74934250 T C ATXN7L3B 3'UTR 0.13 TCGA-CA-6717-01 12 74935117 74935117 A C ATXN7L3B 3'UTR 0.10 TCGA-CA-6717-01 12 7520728 7520728 G T CD163L1 Missense_Mutation p.L1380I 0.25 tolerated(0.1) possibly_damaging(0.831) TCGA-CA-6717-01 12 7520788 7520788 A C CD163L1 Missense_Mutation p.L1360V 0.11 tolerated(0.32) benign(0.01) TCGA-CA-6717-01 12 75437022 75437023 - T KCNC2 Splice_Site p.X594_splice 0.08 TCGA-CA-6717-01 12 75676053 75676053 C A CAPS2 Missense_Mutation p.K549N 0.19 deleterious(0.04) benign(0.311) TCGA-CA-6717-01 12 75874614 75874614 C T GLIPR1 5'UTR 0.16 TCGA-CA-6717-01 12 75892448 75892448 T G KRR1 3'UTR 0.32 TCGA-CA-6717-01 12 76424511 76424511 A G PHLDA1 Silent p.P337P 0.08 TCGA-CA-6717-01 12 76453980 76453980 A C NAP1L1 Missense_Mutation p.Y96D 0.10 deleterious(0) benign(0.213) TCGA-CA-6717-01 12 76741366 76741366 G A BBS10 Silent p.L133L 0.20 TCGA-CA-6717-01 12 76752586 76752586 G A OSBPL8 Silent p.S778S 0.22 TCGA-CA-6717-01 12 76765317 76765317 A C OSBPL8 Silent p.V655V 0.11 TCGA-CA-6717-01 12 76881382 76881382 C T OSBPL8 5'UTR 0.14 TCGA-CA-6717-01 12 77239547 77239547 T G ZDHHC17 Missense_Mutation p.F463C 0.12 deleterious(0.01) benign(0.327) TCGA-CA-6717-01 12 77449676 77449677 - A E2F7 Frame_Shift_Ins p.P110Sfs*3 0.08 TCGA-CA-6717-01 12 7805130 7805130 C T APOBEC1 Missense_Mutation p.V116I 0.16 tolerated(0.16) benign(0.129) TCGA-CA-6717-01 12 7805206 7805206 C T APOBEC1 Nonsense_Mutation p.W90* 0.32 TCGA-CA-6717-01 12 78400773 78400773 A G NAV3 Silent p.K485K 0.13 TCGA-CA-6717-01 12 7842634 7842634 A G GDF3 Missense_Mutation p.F312S 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6717-01 12 78513598 78513598 G T NAV3 Missense_Mutation p.D1208Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 12 78513692 78513692 A C NAV3 Missense_Mutation p.K1239T 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 78522626 78522626 A T NAV3 Missense_Mutation p.K1474I 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 78531013 78531013 A G NAV3 Missense_Mutation p.N1500D 0.14 deleterious(0) benign(0.23) TCGA-CA-6717-01 12 78531031 78531031 G T NAV3 Missense_Mutation p.D1506Y 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 78553043 78553043 C A NAV3 Missense_Mutation p.L1616I 0.16 deleterious(0) possibly_damaging(0.832) TCGA-CA-6717-01 12 78583804 78583804 G A NAV3 Silent p.T2010T 0.24 TCGA-CA-6717-01 12 78591108 78591108 C A NAV3 Missense_Mutation p.L2103I 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-CA-6717-01 12 7864224 7864224 G A DPPA3 Missense_Mutation p.E20K 0.27 deleterious(0.02) benign(0.086) TCGA-CA-6717-01 12 7922729 7922729 C T NANOGNB Silent p.L85L 0.15 TCGA-CA-6717-01 12 79689981 79689981 C A SYT1 Missense_Mutation p.L203I 0.16 deleterious(0.03) possibly_damaging(0.867) TCGA-CA-6717-01 12 79747365 79747365 G T SYT1 Missense_Mutation p.K298N 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6717-01 12 80645520 80645520 G T OTOGL Missense_Mutation p.R358I 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 80658911 80658911 C T OTOGL Silent p.C706C 0.18 TCGA-CA-6717-01 12 80732895 80732895 G T OTOGL Missense_Mutation p.S1625I 0.10 deleterious(0) benign(0.254) TCGA-CA-6717-01 12 80746083 80746083 G A OTOGL Silent p.P1749P 0.11 TCGA-CA-6717-01 12 80750625 80750625 G T OTOGL Nonsense_Mutation p.E1975* 0.11 TCGA-CA-6717-01 12 80771847 80771847 C T OTOGL 3'UTR 0.17 TCGA-CA-6717-01 12 80890236 80890236 C A PTPRQ Missense_Mutation p.S729Y 0.06 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 12 80940333 80940333 A G PTPRQ Splice_Site p.X1288_splice 0.24 TCGA-CA-6717-01 12 80940421 80940421 A C PTPRQ Missense_Mutation p.K1316N 0.15 deleterious(0.04) possibly_damaging(0.848) TCGA-CA-6717-01 12 80982059 80982059 C T PTPRQ Silent p.S1475S 0.10 TCGA-CA-6717-01 12 81503338 81503338 G A ACSS3 Splice_Site p.X104_splice 0.08 TCGA-CA-6717-01 12 81657027 81657027 C A PPFIA2 Missense_Mutation p.R1233I 0.07 deleterious_low_confidence(0) benign(0.033) TCGA-CA-6717-01 12 81833806 81833806 A G PPFIA2 Missense_Mutation p.V197A 0.20 tolerated(0.47) benign(0.016) TCGA-CA-6717-01 12 8205425 8205425 C T FOXJ2 Silent p.F568F 0.14 TCGA-CA-6717-01 12 8211462 8211462 T G C3AR1 Missense_Mutation p.K440N 0.17 deleterious(0) possibly_damaging(0.907) TCGA-CA-6717-01 12 8211566 8211566 C A C3AR1 Nonsense_Mutation p.E406* 0.15 TCGA-CA-6717-01 12 8212699 8212699 A G C3AR1 Missense_Mutation p.V28A 0.08 tolerated(0.36) benign(0.022) TCGA-CA-6717-01 12 82792991 82792991 C A METTL25 Missense_Mutation p.L317I 0.10 tolerated(0.78) benign(0.351) TCGA-CA-6717-01 12 82796892 82796892 T C METTL25 Missense_Mutation p.F421S 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 8281878 8281878 C A CLEC4A Missense_Mutation p.S73Y 0.11 deleterious(0.02) probably_damaging(0.949) TCGA-CA-6717-01 12 82872903 82872903 T G METTL25 3'UTR 0.14 TCGA-CA-6717-01 12 8329639 8329639 G A ZNF705A Silent p.S121S 0.19 TCGA-CA-6717-01 12 83324320 83324320 A C TMTC2 Missense_Mutation p.N532H 0.09 deleterious(0) probably_damaging(0.936) TCGA-CA-6717-01 12 8376136 8376136 C A FAM90A1 Missense_Mutation p.R114M 0.09 tolerated(0.06) benign(0.349) TCGA-CA-6717-01 12 8377416 8377416 G A FAM90A1 Missense_Mutation p.R5C 0.36 tolerated(0.06) possibly_damaging(0.781) TCGA-CA-6717-01 12 85423718 85423718 T G TSPAN19 Silent p.R3R 0.15 TCGA-CA-6717-01 12 85438496 85438496 G T LRRIQ1 Missense_Mutation p.S82I 0.07 deleterious(0) possibly_damaging(0.828) TCGA-CA-6717-01 12 85449552 85449552 A G LRRIQ1 Silent p.K327K 0.10 TCGA-CA-6717-01 12 85517876 85517876 A C LRRIQ1 Missense_Mutation p.N1196H 0.11 deleterious(0.02) probably_damaging(0.962) TCGA-CA-6717-01 12 85680695 85680695 C T ALX1 Missense_Mutation p.A199V 0.30 tolerated(0.82) benign(0.003) TCGA-CA-6717-01 12 86198642 86198642 C T RASSF9 Silent p.A382A 0.11 TCGA-CA-6717-01 12 86198722 86198722 C A RASSF9 Nonsense_Mutation p.E356* 0.10 TCGA-CA-6717-01 12 86276063 86276063 G T NTS Missense_Mutation p.K141N 0.22 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 8671638 8671638 G T CLEC4D Missense_Mutation p.R89I 0.13 tolerated(0.08) benign(0.091) TCGA-CA-6717-01 12 8687106 8687106 T G CLEC4E 3'UTR 0.25 TCGA-CA-6717-01 12 8693410 8693410 G T CLEC4E 5'UTR 0.13 TCGA-CA-6717-01 12 8808382 8808382 T G MFAP5 Missense_Mutation p.N47H 0.43 deleterious(0) probably_damaging(0.917) TCGA-CA-6717-01 12 88374051 88374051 T C C12orf50 3'UTR 0.20 TCGA-CA-6717-01 12 88376927 88376927 C T C12orf50 Missense_Mutation p.R391Q 0.11 deleterious(0.01) benign(0.211) TCGA-CA-6717-01 12 88442948 88442948 T G C12orf29 3'UTR 0.11 TCGA-CA-6717-01 12 88449412 88449412 T G CEP290 Missense_Mutation p.K2301Q 0.10 benign(0.134) TCGA-CA-6717-01 12 88465691 88465691 C A CEP290 Nonsense_Mutation p.E1908* 0.22 TCGA-CA-6717-01 12 88500649 88500649 C A CEP290 Nonsense_Mutation p.E874* 0.21 TCGA-CA-6717-01 12 88514005 88514005 T G CEP290 Missense_Mutation p.N470H 0.10 possibly_damaging(0.718) TCGA-CA-6717-01 12 8866413 8866413 G A RIMKLB 5'UTR 0.23 TCGA-CA-6717-01 12 8906545 8906545 C T RIMKLB Missense_Mutation p.R185C 0.08 deleterious(0.03) benign(0.047) TCGA-CA-6717-01 12 8975302 8975302 G T A2ML1 Nonsense_Mutation p.E19* 0.24 TCGA-CA-6717-01 12 89885873 89885873 A C POC1B Missense_Mutation p.F98V 0.12 deleterious(0) benign(0.12) TCGA-CA-6717-01 12 8990980 8990980 G T A2ML1 Missense_Mutation p.D302Y 0.23 deleterious(0) benign(0.065) TCGA-CA-6717-01 12 89917754 89917754 G A GALNT4 Silent p.S191S 0.24 TCGA-CA-6717-01 12 89918384 89918384 G A GALNT4 5'UTR 0.13 TCGA-CA-6717-01 12 89992930 89992930 G A ATP2B1 Silent p.I1105I 0.26 TCGA-CA-6717-01 12 90013866 90013866 G T ATP2B1 Missense_Mutation p.S580Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 90049512 90049512 T C ATP2B1 Missense_Mutation p.E51G 0.09 deleterious(0.04) benign(0.073) TCGA-CA-6717-01 12 90049753 90049753 G T ATP2B1 5'UTR 0.31 TCGA-CA-6717-01 12 9016543 9016543 C A A2ML1 Missense_Mutation p.T1219N 0.21 deleterious(0.01) benign(0.219) TCGA-CA-6717-01 12 9020871 9020871 T G A2ML1 Missense_Mutation p.F1327V 0.09 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 12 91348402 91348402 G A CCER1 Nonsense_Mutation p.R40* 0.21 TCGA-CA-6717-01 12 91357899 91357899 T C EPYC 3'UTR 0.16 TCGA-CA-6717-01 12 91449482 91449482 T G KERA Missense_Mutation p.N193H 0.23 deleterious(0.01) benign(0.139) TCGA-CA-6717-01 12 91449567 91449567 A G KERA Silent p.N164N 0.08 TCGA-CA-6717-01 12 91449732 91449732 G A KERA Silent p.N109N 0.09 TCGA-CA-6717-01 12 91502199 91502199 G A LUM Silent p.L186L 0.10 TCGA-CA-6717-01 12 91552162 91552162 T G DCN Missense_Mutation p.K150T 0.10 tolerated(0.07) benign(0.066) TCGA-CA-6717-01 12 9222402 9222402 C A A2M Missense_Mutation p.R1401I 0.14 tolerated(0.08) benign(0.09) TCGA-CA-6717-01 12 9224994 9224994 G T A2M Missense_Mutation p.P1355H 0.10 tolerated(0.11) benign(0.007) TCGA-CA-6717-01 12 9243870 9243870 G A A2M Missense_Mutation p.P799L 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 12 9268471 9268471 G T A2M 5'UTR 0.11 TCGA-CA-6717-01 12 9313021 9313021 C A PZP Nonsense_Mutation p.E980* 0.14 TCGA-CA-6717-01 12 9313659 9313659 C A PZP Nonsense_Mutation p.E948* 0.23 TCGA-CA-6717-01 12 9315197 9315197 G A PZP Silent p.A928A 0.09 TCGA-CA-6717-01 12 93157922 93157922 C T PLEKHG7 Missense_Mutation p.P296S 0.10 tolerated(0.41) benign(0.088) TCGA-CA-6717-01 12 9316306 9316306 C T PZP Silent p.E898E 0.15 TCGA-CA-6717-01 12 9318693 9318693 C T PZP Missense_Mutation p.R738Q 0.14 deleterious(0.01) possibly_damaging(0.788) TCGA-CA-6717-01 12 93202827 93202827 C A EEA1 Nonsense_Mutation p.E769* 0.08 TCGA-CA-6717-01 12 93209973 93209973 T G EEA1 Intron 0.14 TCGA-CA-6717-01 12 9354925 9354925 C T PZP Missense_Mutation p.R157Q 0.17 deleterious(0.04) benign(0.002) TCGA-CA-6717-01 12 94243912 94243912 C T CRADD Silent p.N155N 0.10 TCGA-CA-6717-01 12 94563003 94563003 T C PLXNC1 Silent p.V379V 0.08 TCGA-CA-6717-01 12 94634369 94634369 T G PLXNC1 Silent p.S743S 0.11 TCGA-CA-6717-01 12 94658931 94658931 T G PLXNC1 Missense_Mutation p.I1176S 0.10 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 12 94763712 94763712 T C CCDC41 Missense_Mutation p.Q345R 0.12 deleterious(0.02) benign(0.147) TCGA-CA-6717-01 12 94806296 94806296 T C CCDC41 5'UTR 0.12 TCGA-CA-6717-01 12 95442950 95442950 G T NR2C1 Nonsense_Mutation p.S342* 0.11 TCGA-CA-6717-01 12 95604171 95604171 C A FGD6 Missense_Mutation p.D297Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-CA-6717-01 12 95604226 95604226 C T FGD6 Silent p.G278G 0.21 TCGA-CA-6717-01 12 95681599 95681599 C T VEZT Silent p.V496V 0.29 TCGA-CA-6717-01 12 95694098 95694098 T G VEZT Nonsense_Mutation p.Y663* 0.22 TCGA-CA-6717-01 12 95905701 95905701 C A METAP2 Nonsense_Mutation p.S332* 0.21 TCGA-CA-6717-01 12 96052875 96052875 C A NTN4 Missense_Mutation p.R625I 0.23 tolerated(0.07) benign(0.007) TCGA-CA-6717-01 12 96292472 96292472 A C CCDC38 Missense_Mutation p.F136C 0.18 deleterious(0) probably_damaging(0.967) TCGA-CA-6717-01 12 96412663 96412663 T G LTA4H Missense_Mutation p.I244L 0.10 tolerated(0.05) benign(0.116) TCGA-CA-6717-01 12 96421222 96421222 C T LTA4H Silent p.Q137Q 0.09 TCGA-CA-6717-01 12 968600 968600 A G WNK1 Silent p.R530R 0.22 TCGA-CA-6717-01 12 97045540 97045540 G A C12orf55 Missense_Mutation p.A1683T 0.08 tolerated(0.08) possibly_damaging(0.448) TCGA-CA-6717-01 12 97057633 97057633 A C C12orf55 Missense_Mutation p.K1829T 0.10 tolerated(0.06) benign(0.346) TCGA-CA-6717-01 12 97073486 97073486 G A C12orf55 Missense_Mutation p.R1891Q 0.08 tolerated(0.19) benign(0.014) TCGA-CA-6717-01 12 97137209 97137209 A G C12orf55 Missense_Mutation p.I2417V 0.12 deleterious(0.04) benign(0) TCGA-CA-6717-01 12 97150333 97150333 A C C12orf55 Missense_Mutation p.Q2646H 0.12 tolerated(0.12) benign(0.004) TCGA-CA-6717-01 12 97328953 97328953 G T NEDD1 Missense_Mutation p.R237I 0.29 deleterious(0) possibly_damaging(0.847) TCGA-CA-6717-01 12 9754156 9754156 T C KLRB1 Missense_Mutation p.K42R 0.10 tolerated(0.05) probably_damaging(0.996) TCGA-CA-6717-01 12 977148 977148 G A WNK1 Intron 0.21 TCGA-CA-6717-01 12 977420 977420 A G WNK1 Intron 0.13 TCGA-CA-6717-01 12 978035 978035 A G WNK1 Intron 0.17 TCGA-CA-6717-01 12 97885729 97885729 C T MIR1251 RNA 0.27 TCGA-CA-6717-01 12 9833559 9833559 A G CLEC2D Silent p.L34L 0.11 TCGA-CA-6717-01 12 9840578 9840578 A C CLEC2D Missense_Mutation p.K85Q 0.13 deleterious(0.02) probably_damaging(0.95) TCGA-CA-6717-01 12 9845428 9845428 T C CLEC2D Missense_Mutation p.F121S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 988759 988759 A G WNK1 Silent p.V798V 0.15 TCGA-CA-6717-01 12 98927350 98927350 G T TMPO Nonsense_Mutation p.E439* 0.14 TCGA-CA-6717-01 12 98991676 98991676 G T SLC25A3 Missense_Mutation p.V109F 0.09 deleterious(0.01) benign(0.192) TCGA-CA-6717-01 12 98991761 98991761 A C SLC25A3 Missense_Mutation p.K137T 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 12 98995332 98995332 A G SLC25A3 3'UTR 0.09 TCGA-CA-6717-01 12 99019857 99019857 G T IKBIP Missense_Mutation p.Q329K 0.24 deleterious(0) probably_damaging(0.93) TCGA-CA-6717-01 12 99028113 99028113 G T IKBIP Missense_Mutation p.F86L 0.13 tolerated(0.41) possibly_damaging(0.672) TCGA-CA-6717-01 12 99793439 99793439 C T ANKS1B Missense_Mutation p.E576K 0.09 tolerated_low_confidence(0.25) benign(0.08) TCGA-CA-6717-01 12 9997135 9997135 A C KLRF1 3'UTR 0.28 TCGA-CA-6717-01 13 100204476 100204476 T C TM9SF2 Missense_Mutation p.S462P 0.08 deleterious(0.02) probably_damaging(0.976) TCGA-CA-6717-01 13 100518534 100518534 C T CLYBL Silent p.A225A 0.17 TCGA-CA-6717-01 13 100617631 100617631 C A ZIC5 Nonstop_Mutation p.*664Yext*20 0.16 TCGA-CA-6717-01 13 100617962 100617962 T G ZIC5 Missense_Mutation p.K554T 0.16 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 13 100623955 100623955 C A ZIC5 5'UTR 0.12 TCGA-CA-6717-01 13 100915055 100915055 T G PCCA Missense_Mutation p.F263L 0.12 deleterious(0.02) benign(0.195) TCGA-CA-6717-01 13 101257173 101257173 A - TMTC4 3'UTR 0.08 TCGA-CA-6717-01 13 101717808 101717808 C T NALCN Missense_Mutation p.E1518K 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 101726012 101726012 G A NALCN Missense_Mutation p.S1374L 0.21 deleterious(0) benign(0.212) TCGA-CA-6717-01 13 101727002 101727002 C A NALCN Missense_Mutation p.K1322N 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 13 101733945 101733945 C A NALCN Missense_Mutation p.R1273I 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 101742238 101742238 A G NALCN Missense_Mutation p.W1117R 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 101910863 101910863 G A NALCN Silent p.I399I 0.13 TCGA-CA-6717-01 13 102047673 102047673 A C NALCN Missense_Mutation p.I51S 0.11 deleterious(0.01) possibly_damaging(0.542) TCGA-CA-6717-01 13 102231672 102231672 C T ITGBL1 Silent p.C207C 0.10 TCGA-CA-6717-01 13 102368175 102368175 A G ITGBL1 3'UTR 0.26 TCGA-CA-6717-01 13 103053837 103053837 T G FGF14 Missense_Mutation p.K64N 0.17 tolerated(0.23) benign(0.012) TCGA-CA-6717-01 13 103257169 103257169 C T TPP2 Silent p.I64I 0.18 TCGA-CA-6717-01 13 103309481 103309481 G T TPP2 Missense_Mutation p.D1010Y 0.18 deleterious(0.01) possibly_damaging(0.526) TCGA-CA-6717-01 13 103326660 103326660 C T TPP2 Silent p.L1120L 0.10 TCGA-CA-6717-01 13 103326735 103326735 T G TPP2 Missense_Mutation p.I1145M 0.10 tolerated(0.1) benign(0.082) TCGA-CA-6717-01 13 103343256 103343256 G A METTL21C Silent p.Y63Y 0.12 TCGA-CA-6717-01 13 103382069 103382069 T C CCDC168 Missense_Mutation p.K2364R 0.14 tolerated(0.38) unknown(0) TCGA-CA-6717-01 13 103382816 103382816 G T CCDC168 Missense_Mutation p.S2115Y 0.22 tolerated(0.24) unknown(0) TCGA-CA-6717-01 13 103383737 103383737 C A CCDC168 Missense_Mutation p.R1808M 0.20 deleterious(0) unknown(0) TCGA-CA-6717-01 13 103384255 103384255 G A CCDC168 Silent p.I1635I 0.19 TCGA-CA-6717-01 13 103384765 103384765 T G CCDC168 Missense_Mutation p.K1465N 0.22 tolerated(0.23) unknown(0) TCGA-CA-6717-01 13 103385160 103385160 G T CCDC168 Missense_Mutation p.Q1334K 0.09 tolerated(0.13) unknown(0) TCGA-CA-6717-01 13 103385973 103385973 C A CCDC168 Nonsense_Mutation p.E1063* 0.10 TCGA-CA-6717-01 13 103386442 103386442 C A CCDC168 Missense_Mutation p.E906D 0.19 tolerated(0.21) benign(0.388) TCGA-CA-6717-01 13 103386553 103386553 T C CCDC168 Silent p.E869E 0.09 TCGA-CA-6717-01 13 103388295 103388295 A C CCDC168 Missense_Mutation p.Y289D 0.11 tolerated(0.11) possibly_damaging(0.52) TCGA-CA-6717-01 13 103388436 103388436 G T CCDC168 Missense_Mutation p.L242I 0.08 tolerated(0.96) possibly_damaging(0.567) TCGA-CA-6717-01 13 103388623 103388623 C A CCDC168 Missense_Mutation p.E179D 0.10 deleterious(0.05) benign(0.388) TCGA-CA-6717-01 13 103395974 103395974 A G LINC00283 RNA 0.24 TCGA-CA-6717-01 13 103396724 103396724 G T LINC00283 RNA 0.11 TCGA-CA-6717-01 13 103418778 103418778 A C TEX30 Missense_Mutation p.I219M 0.22 tolerated(0.14) benign(0.057) TCGA-CA-6717-01 13 103419754 103419754 G A TEX30 Missense_Mutation p.R125W 0.24 deleterious(0.02) possibly_damaging(0.816) TCGA-CA-6717-01 13 103443382 103443382 C T KDELC1 Missense_Mutation p.E318K 0.25 tolerated(0.11) possibly_damaging(0.636) TCGA-CA-6717-01 13 103459812 103459812 A C BIVM-ERCC5 Missense_Mutation p.K37N 0.12 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-CA-6717-01 13 103459859 103459859 C A BIVM-ERCC5 Nonsense_Mutation p.S53* 0.21 TCGA-CA-6717-01 13 103492073 103492073 T C BIVM-ERCC5 Missense_Mutation p.I429T 0.10 tolerated_low_confidence(0.13) possibly_damaging(0.702) TCGA-CA-6717-01 13 108518861 108518861 C T FAM155A Silent p.P28P 0.25 TCGA-CA-6717-01 13 108885021 108885021 G T ABHD13 3'UTR 0.18 TCGA-CA-6717-01 13 108886439 108886439 T G ABHD13 3'UTR 0.13 TCGA-CA-6717-01 13 108922766 108922766 G T TNFSF13B Nonsense_Mutation p.E140* 0.24 TCGA-CA-6717-01 13 109507804 109507804 C A MYO16 Missense_Mutation p.P399H 0.17 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 13 109699312 109699312 T C MYO16 Missense_Mutation p.S927P 0.08 tolerated(0.69) benign(0.101) TCGA-CA-6717-01 13 109707418 109707418 A G MYO16 Missense_Mutation p.T1003A 0.12 tolerated(0.19) benign(0.02) TCGA-CA-6717-01 13 110804742 110804742 T C COL4A1 Missense_Mutation p.N1623D 0.17 unknown(0) TCGA-CA-6717-01 13 110861207 110861207 T G COL4A1 Missense_Mutation p.K228Q 0.20 unknown(0) TCGA-CA-6717-01 13 110863993 110863993 C T COL4A1 Splice_Site p.X156_splice 0.33 TCGA-CA-6717-01 13 111927094 111927094 G T ARHGEF7 Missense_Mutation p.R431I 0.09 deleterious(0) probably_damaging(0.929) TCGA-CA-6717-01 13 113765078 113765078 C T F7 Missense_Mutation p.R69W 0.19 tolerated(0.16) benign(0.024) TCGA-CA-6717-01 13 113771790 113771790 C A F7 Missense_Mutation p.L229M 0.17 tolerated(0.12) benign(0.332) TCGA-CA-6717-01 13 113793762 113793762 C T F10 Silent p.F116F 0.27 TCGA-CA-6717-01 13 113907430 113907430 A G CUL4A Missense_Mutation p.Y558C 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 114164593 114164593 T A TMCO3 Missense_Mutation p.L360Q 0.08 deleterious(0) probably_damaging(0.923) TCGA-CA-6717-01 13 114188406 114188406 C A TMCO3 Missense_Mutation p.L464I 0.19 tolerated(0.07) benign(0.401) TCGA-CA-6717-01 13 114322097 114322097 G A GRK1 Silent p.A132A 0.10 TCGA-CA-6717-01 13 115089704 115089704 C A CHAMP1 Silent p.A129A 0.14 TCGA-CA-6717-01 13 115089750 115089750 T C CHAMP1 Missense_Mutation p.S145P 0.13 tolerated(0.22) benign(0.023) TCGA-CA-6717-01 13 19997266 19997266 T G TPTE2 Missense_Mutation p.K502T 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 13 20049751 20049751 C T TPTE2 Silent p.K64K 0.08 TCGA-CA-6717-01 13 20315769 20315769 C A PSPC1 Nonsense_Mutation p.E330* 0.16 TCGA-CA-6717-01 13 20325437 20325437 T C PSPC1 Missense_Mutation p.E314G 0.08 deleterious(0) possibly_damaging(0.489) TCGA-CA-6717-01 13 20346485 20346485 C A PSPC1 Missense_Mutation p.D191Y 0.24 deleterious(0) probably_damaging(0.961) TCGA-CA-6717-01 13 20567815 20567815 A G ZMYM2 Silent p.Q201Q 0.22 TCGA-CA-6717-01 13 20605475 20605475 C A ZMYM2 Nonsense_Mutation p.S623* 0.21 TCGA-CA-6717-01 13 20611030 20611030 T G ZMYM2 Missense_Mutation p.F758C 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 13 21170367 21170367 A T IFT88 Silent p.G168G 0.16 TCGA-CA-6717-01 13 21175866 21175866 G T IFT88 Nonsense_Mutation p.G288* 0.08 TCGA-CA-6717-01 13 21175993 21175993 G A IFT88 Missense_Mutation p.R330Q 0.21 deleterious(0.04) benign(0.011) TCGA-CA-6717-01 13 21237701 21237701 A C IFT88 Missense_Mutation p.R720S 0.32 tolerated(0.59) benign(0.002) TCGA-CA-6717-01 13 21331636 21331636 G A N6AMT2 Silent p.G34G 0.17 TCGA-CA-6717-01 13 21364718 21364718 A C XPO4 Missense_Mutation p.D933E 0.15 tolerated(0.95) benign(0.177) TCGA-CA-6717-01 13 21548920 21548920 G A LATS2 3'UTR 0.38 TCGA-CA-6717-01 13 21549342 21549342 G T LATS2 Missense_Mutation p.F978L 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-CA-6717-01 13 21553890 21553890 G A LATS2 Silent p.F904F 0.23 TCGA-CA-6717-01 13 21746799 21746799 C A SKA3 Missense_Mutation p.R42I 0.18 deleterious(0) benign(0.072) TCGA-CA-6717-01 13 23904263 23904263 C T SACS 3'UTR 0.14 TCGA-CA-6717-01 13 23904761 23904761 T G SACS Missense_Mutation p.E4418D 0.12 benign(0.003) TCGA-CA-6717-01 13 23905662 23905662 G T SACS Nonsense_Mutation p.S4118* 0.13 TCGA-CA-6717-01 13 23908825 23908825 C A SACS Nonsense_Mutation p.E3064* 0.12 TCGA-CA-6717-01 13 23909298 23909298 C T SACS Missense_Mutation p.R2906Q 0.07 probably_damaging(0.99) TCGA-CA-6717-01 13 23909658 23909658 T C SACS Missense_Mutation p.D2786G 0.10 probably_damaging(0.989) TCGA-CA-6717-01 13 23909753 23909753 C A SACS Missense_Mutation p.K2754N 0.28 probably_damaging(0.997) TCGA-CA-6717-01 13 23910787 23910787 C A SACS Nonsense_Mutation p.E2410* 0.10 TCGA-CA-6717-01 13 23913555 23913555 T G SACS Missense_Mutation p.D1487A 0.18 probably_damaging(0.997) TCGA-CA-6717-01 13 24233334 24233334 T G TNFRSF19 Missense_Mutation p.F197L 0.18 tolerated(0.18) probably_damaging(0.987) TCGA-CA-6717-01 13 24798000 24798000 G A SPATA13 Silent p.P311P 0.17 TCGA-CA-6717-01 13 24823801 24823801 A G SPATA13 Missense_Mutation p.K614E 0.14 tolerated(0.46) benign(0.004) TCGA-CA-6717-01 13 24895570 24895570 A C C1QTNF9 Missense_Mutation p.K222N 0.10 deleterious(0) possibly_damaging(0.762) TCGA-CA-6717-01 13 25000674 25000674 G A PARP4 Missense_Mutation p.R1637C 0.10 tolerated(0.05) benign(0.028) TCGA-CA-6717-01 13 25033243 25033243 G T PARP4 Missense_Mutation p.S788Y 0.11 deleterious(0.03) benign(0.062) TCGA-CA-6717-01 13 25171578 25171578 A C RP11-556N21.1 RNA 0.19 TCGA-CA-6717-01 13 25349011 25349011 G T RNF17 Missense_Mutation p.D96Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-CA-6717-01 13 25404718 25404718 T G RNF17 Missense_Mutation p.F781C 0.19 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 13 25425625 25425625 A C RNF17 Missense_Mutation p.K1079T 0.09 deleterious(0) probably_damaging(0.932) TCGA-CA-6717-01 13 25435514 25435514 A G RNF17 Missense_Mutation p.N1295D 0.18 tolerated(0.31) benign(0.017) TCGA-CA-6717-01 13 25444728 25444728 C T RNF17 Missense_Mutation p.S1433F 0.18 tolerated(0.06) benign(0.383) TCGA-CA-6717-01 13 25458198 25458198 T G CENPJ Missense_Mutation p.K1243Q 0.13 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 13 25486839 25486839 C T CENPJ Missense_Mutation p.A109T 0.12 tolerated(0.17) benign(0.002) TCGA-CA-6717-01 13 25670501 25670501 G A PABPC3 Silent p.A55A 0.13 TCGA-CA-6717-01 13 25670937 25670937 G T PABPC3 Missense_Mutation p.D201Y 0.15 deleterious(0.03) benign(0.281) TCGA-CA-6717-01 13 25743968 25743968 C T AMER2 Missense_Mutation p.R597Q 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 13 25889603 25889603 A C NUPL1 Missense_Mutation p.K228T 0.13 tolerated(0.19) possibly_damaging(0.896) TCGA-CA-6717-01 13 26114518 26114518 A C ATP8A2 Missense_Mutation p.I215L 0.13 tolerated(0.09) benign(0.17) TCGA-CA-6717-01 13 26125499 26125499 G T ATP8A2 Missense_Mutation p.K305N 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 26138125 26138125 G T ATP8A2 Missense_Mutation p.D477Y 0.10 tolerated(0.36) possibly_damaging(0.504) TCGA-CA-6717-01 13 26788214 26788214 C T RNF6 Missense_Mutation p.R602Q 0.20 tolerated(1) benign(0.003) TCGA-CA-6717-01 13 26788932 26788932 C T RNF6 Missense_Mutation p.A363T 0.09 tolerated(0.68) benign(0.001) TCGA-CA-6717-01 13 28009267 28009267 T C GTF3A Intron 0.11 TCGA-CA-6717-01 13 28009292 28009292 T C GTF3A Missense_Mutation p.V299A 0.31 deleterious(0.04) benign(0.135) TCGA-CA-6717-01 13 28014415 28014415 G A MTIF3 Silent p.T57T 0.23 TCGA-CA-6717-01 13 28562704 28562704 C A URAD Missense_Mutation p.R24I 0.23 deleterious(0.02) benign(0.392) TCGA-CA-6717-01 13 28631590 28631590 A C FLT3 Silent p.V126V 0.10 TCGA-CA-6717-01 13 28631598 28631598 C A FLT3 Nonsense_Mutation p.G124* 0.13 TCGA-CA-6717-01 13 28771469 28771469 G T PAN3 Nonsense_Mutation p.E280* 0.09 TCGA-CA-6717-01 13 28844922 28844922 C A PAN3 Missense_Mutation p.S626Y 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 28880820 28880820 C A FLT1 Missense_Mutation p.K1270N 0.19 tolerated(0.28) benign(0.043) TCGA-CA-6717-01 13 29012359 29012359 T - FLT1 Frame_Shift_Del p.K171Sfs*7 0.14 TCGA-CA-6717-01 13 29275706 29275706 A G SLC46A3 Silent p.C438C 0.09 TCGA-CA-6717-01 13 29287375 29287375 G A SLC46A3 Nonsense_Mutation p.R168* 0.23 TCGA-CA-6717-01 13 29291982 29291982 T G SLC46A3 Missense_Mutation p.K52Q 0.09 tolerated(0.76) benign(0.007) TCGA-CA-6717-01 13 29599705 29599705 G A MTUS2 Silent p.S300S 0.20 TCGA-CA-6717-01 13 30077204 30077204 G A MTUS2 Missense_Mutation p.R1334Q 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 30341249 30341249 G T UBL3 3'UTR 0.28 TCGA-CA-6717-01 13 30784504 30784504 A G KATNAL1 Missense_Mutation p.I408T 0.09 deleterious(0) possibly_damaging(0.694) TCGA-CA-6717-01 13 30784535 30784535 C T KATNAL1 Missense_Mutation p.E398K 0.16 tolerated(0.44) benign(0.004) TCGA-CA-6717-01 13 30801562 30801562 T C KATNAL1 Missense_Mutation p.I378M 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 30857872 30857872 C T KATNAL1 Missense_Mutation p.E15K 0.09 deleterious(0) possibly_damaging(0.736) TCGA-CA-6717-01 13 31035754 31035754 G T HMGB1 Intron 0.14 TCGA-CA-6717-01 13 31540478 31540478 G T TEX26 Missense_Mutation p.D197Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 13 31722541 31722541 A T HSPH1 Missense_Mutation p.I405N 0.18 tolerated(0.39) benign(0.049) TCGA-CA-6717-01 13 32340095 32340095 C A RXFP2 Missense_Mutation p.S143Y 0.10 tolerated(0.09) benign(0.141) TCGA-CA-6717-01 13 32705942 32705942 G A FRY Missense_Mutation p.V284M 0.10 tolerated(0.05) probably_damaging(0.952) TCGA-CA-6717-01 13 32709304 32709304 G A FRY Missense_Mutation p.R354Q 0.28 deleterious(0.01) possibly_damaging(0.895) TCGA-CA-6717-01 13 32731523 32731523 G A FRY Missense_Mutation p.E589K 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 13 32753060 32753060 C A FRY Missense_Mutation p.L921I 0.10 deleterious(0.02) benign(0.434) TCGA-CA-6717-01 13 32802677 32802677 G T FRY Missense_Mutation p.S1764I 0.09 tolerated(0.09) possibly_damaging(0.852) TCGA-CA-6717-01 13 32828512 32828512 T C FRY Missense_Mutation p.V2466A 0.21 tolerated(0.19) probably_damaging(0.997) TCGA-CA-6717-01 13 32893435 32893435 G T BRCA2 Nonsense_Mutation p.E97* 0.17 TCGA-CA-6717-01 13 32906456 32906456 G T BRCA2 Missense_Mutation p.D281Y 0.20 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 13 32906949 32906949 C A BRCA2 Missense_Mutation p.S445Y 0.34 deleterious(0.02) probably_damaging(0.971) TCGA-CA-6717-01 13 32907453 32907453 T G BRCA2 Missense_Mutation p.L613R 0.20 deleterious(0.02) possibly_damaging(0.865) TCGA-CA-6717-01 13 32910426 32910426 G T BRCA2 Missense_Mutation p.R645I 0.11 deleterious(0) possibly_damaging(0.898) TCGA-CA-6717-01 13 32911193 32911193 C A BRCA2 Missense_Mutation p.L901I 0.20 tolerated(0.4) benign(0.038) TCGA-CA-6717-01 13 32912546 32912546 G T BRCA2 Missense_Mutation p.D1352Y 0.10 deleterious(0.01) probably_damaging(0.94) TCGA-CA-6717-01 13 32913764 32913764 A C BRCA2 Missense_Mutation p.N1758H 0.27 deleterious(0.03) benign(0.017) TCGA-CA-6717-01 13 32929397 32929397 T G BRCA2 Silent p.T2469T 0.09 TCGA-CA-6717-01 13 32936758 32936758 A G BRCA2 Missense_Mutation p.E2635G 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 33017924 33017924 C A N4BP2L2 Missense_Mutation p.K250N 0.08 deleterious(0.04) possibly_damaging(0.898) TCGA-CA-6717-01 13 33110965 33110965 T G N4BP2L2 Intron 0.09 TCGA-CA-6717-01 13 33232570 33232570 G T PDS5B Splice_Site p.X134_splice 0.22 TCGA-CA-6717-01 13 33273881 33273881 C T PDS5B Missense_Mutation p.P539S 0.22 tolerated(0.11) benign(0.19) TCGA-CA-6717-01 13 33334792 33334792 G A PDS5B Missense_Mutation p.R1151Q 0.07 tolerated(0.59) probably_damaging(0.99) TCGA-CA-6717-01 13 33638113 33638113 T G KL Missense_Mutation p.H943Q 0.09 tolerated(0.29) benign(0.052) TCGA-CA-6717-01 13 35615082 35615082 G T NBEA Nonsense_Mutation p.E103* 0.11 TCGA-CA-6717-01 13 35716475 35716475 A C NBEA Silent p.T802T 0.13 TCGA-CA-6717-01 13 35736055 35736055 C A NBEA Missense_Mutation p.L1344I 0.17 deleterious(0) possibly_damaging(0.895) TCGA-CA-6717-01 13 35751190 35751190 C A NBEA Missense_Mutation p.L1538I 0.25 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 13 35758192 35758192 C T NBEA Silent p.G1637G 0.16 TCGA-CA-6717-01 13 35770210 35770210 A G NBEA Missense_Mutation p.K1713E 0.11 tolerated_low_confidence(0.08) benign(0.317) TCGA-CA-6717-01 13 36026303 36026303 G T NBEA Nonsense_Mutation p.E2127* 0.21 TCGA-CA-6717-01 13 36046629 36046629 G A NBEA Missense_Mutation p.E2181K 0.20 deleterious(0) possibly_damaging(0.631) TCGA-CA-6717-01 13 36050890 36050890 G A NBEA Intron 0.20 TCGA-CA-6717-01 13 36167423 36167423 T C NBEA Intron 0.10 TCGA-CA-6717-01 13 36167523 36167523 G A NBEA Missense_Mutation p.R2412Q 0.16 deleterious(0.01) benign(0.199) TCGA-CA-6717-01 13 36223924 36223924 G A NBEA Missense_Mutation p.A2614T 0.22 tolerated(0.2) possibly_damaging(0.858) TCGA-CA-6717-01 13 36225941 36225941 G T NBEA Splice_Site p.X2634_splice 0.08 TCGA-CA-6717-01 13 36242645 36242645 C A NBEA Silent p.S2913S 0.15 TCGA-CA-6717-01 13 36245077 36245077 T G NBEA Silent p.A2930A 0.11 TCGA-CA-6717-01 13 36748963 36748963 G T SOHLH2 Missense_Mutation p.P306T 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 36801448 36801448 C A CCDC169 Missense_Mutation p.G206C 0.10 benign(0.003) TCGA-CA-6717-01 13 36909222 36909222 C T SPG20 Missense_Mutation p.R249Q 0.20 deleterious(0) possibly_damaging(0.688) TCGA-CA-6717-01 13 37015273 37015273 C A CCNA1 Missense_Mutation p.L373I 0.10 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 13 37270248 37270248 C A SERTM1 3'UTR 0.19 TCGA-CA-6717-01 13 37270321 37270321 T C SERTM1 3'UTR 0.09 TCGA-CA-6717-01 13 37394018 37394018 A C RFXAP Missense_Mutation p.K175T 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6717-01 13 37422789 37422789 G A SMAD9 3'UTR 0.24 TCGA-CA-6717-01 13 37427563 37427563 A C SMAD9 Missense_Mutation p.F418C 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 37427604 37427604 G A SMAD9 Silent p.V404V 0.25 TCGA-CA-6717-01 13 37618304 37618304 G A SUPT20H Nonsense_Mutation p.R103* 0.09 TCGA-CA-6717-01 13 37678317 37678317 A G CSNK1A1L 3'UTR 0.11 TCGA-CA-6717-01 13 37679092 37679092 A T CSNK1A1L Missense_Mutation p.F101Y 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.886) TCGA-CA-6717-01 13 37679663 37679663 G A CSNK1A1L 5'UTR 0.18 TCGA-CA-6717-01 13 38171377 38171377 C A POSTN Missense_Mutation p.K54N 0.14 deleterious(0) possibly_damaging(0.69) TCGA-CA-6717-01 13 38211598 38211598 C A TRPC4 Missense_Mutation p.K797N 0.18 tolerated(0.14) benign(0.005) TCGA-CA-6717-01 13 38266273 38266273 A C TRPC4 Missense_Mutation p.F366C 0.20 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 13 38320454 38320454 C T TRPC4 Missense_Mutation p.E173K 0.09 deleterious(0.01) benign(0.422) TCGA-CA-6717-01 13 38320543 38320543 A G TRPC4 Missense_Mutation p.I143T 0.12 deleterious(0) possibly_damaging(0.72) TCGA-CA-6717-01 13 39265511 39265511 C T FREM2 Missense_Mutation p.R1344C 0.23 deleterious(0.01) probably_damaging(0.917) TCGA-CA-6717-01 13 39433573 39433573 C T FREM2 Silent p.F2455F 0.10 TCGA-CA-6717-01 13 39433721 39433721 G T FREM2 Nonsense_Mutation p.E2505* 0.11 TCGA-CA-6717-01 13 39446935 39446935 C T FREM2 Silent p.Y2680Y 0.20 TCGA-CA-6717-01 13 39587212 39587212 A G PROSER1 Missense_Mutation p.I726T 0.12 tolerated_low_confidence(0.26) benign(0.004) TCGA-CA-6717-01 13 41134987 41134987 C T FOXO1 Missense_Mutation p.R214H 0.16 tolerated(0.05) probably_damaging(0.998) TCGA-CA-6717-01 13 41507734 41507734 T C ELF1 Missense_Mutation p.K563E 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-CA-6717-01 13 41639178 41639178 G T WBP4 Missense_Mutation p.K34N 0.16 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 13 41706821 41706821 G T KBTBD6 5'UTR 0.11 TCGA-CA-6717-01 13 41768028 41768028 G A KBTBD7 Silent p.F122F 0.10 TCGA-CA-6717-01 13 41800656 41800656 T C MTRF1 Missense_Mutation p.E346G 0.08 deleterious(0) possibly_damaging(0.84) TCGA-CA-6717-01 13 41891051 41891051 T G NAA16 Missense_Mutation p.F42V 0.21 deleterious(0) probably_damaging(0.924) TCGA-CA-6717-01 13 41946363 41946363 G A NAA16 Missense_Mutation p.V658I 0.25 tolerated(1) benign(0.001) TCGA-CA-6717-01 13 42179317 42179317 A G VWA8 Missense_Mutation p.L1658P 0.09 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 13 42357991 42357991 C T VWA8 Silent p.P739P 0.29 TCGA-CA-6717-01 13 42460918 42460918 T C VWA8 Missense_Mutation p.K289E 0.08 tolerated(0.4) benign(0.104) TCGA-CA-6717-01 13 42461370 42461370 C T VWA8 Missense_Mutation p.R260Q 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 13 42803249 42803249 G A DGKH Silent p.P1196P 0.14 TCGA-CA-6717-01 13 42871243 42871243 T C AKAP11 Silent p.S92S 0.11 TCGA-CA-6717-01 13 42873576 42873576 G T AKAP11 Missense_Mutation p.D232Y 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-CA-6717-01 13 42874695 42874695 T C AKAP11 Missense_Mutation p.F605L 0.11 tolerated(0.13) benign(0.045) TCGA-CA-6717-01 13 42876570 42876570 A C AKAP11 Missense_Mutation p.N1230H 0.15 tolerated(0.14) benign(0.002) TCGA-CA-6717-01 13 42877153 42877153 A C AKAP11 Missense_Mutation p.K1424T 0.20 tolerated(0.1) possibly_damaging(0.479) TCGA-CA-6717-01 13 42877860 42877860 G T AKAP11 Nonsense_Mutation p.E1660* 0.18 TCGA-CA-6717-01 13 43155337 43155337 T G TNFSF11 Missense_Mutation p.F99V 0.25 tolerated(0.18) benign(0) TCGA-CA-6717-01 13 43155429 43155429 G T TNFSF11 Missense_Mutation p.K129N 0.08 deleterious(0) possibly_damaging(0.511) TCGA-CA-6717-01 13 43181212 43181212 C T TNFSF11 3'UTR 0.33 TCGA-CA-6717-01 13 43544765 43544765 C A EPSTI1 Missense_Mutation p.R77I 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 44462923 44462923 T C LACC1 Missense_Mutation p.M313T 0.10 deleterious(0.04) benign(0.411) TCGA-CA-6717-01 13 44734851 44734851 C A SMIM2 Missense_Mutation p.K47N 0.13 deleterious(0.02) benign(0.027) TCGA-CA-6717-01 13 45563274 45563274 C A NUFIP1 Missense_Mutation p.D100Y 0.12 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-CA-6717-01 13 45768748 45768748 T G KCTD4 5'UTR 0.10 TCGA-CA-6717-01 13 45911505 45911505 A C TPT1 3'UTR 0.11 TCGA-CA-6717-01 13 45965216 45965216 G A SLC25A30 3'Flank 0.10 TCGA-CA-6717-01 13 46118944 46118944 A G FAM194B Missense_Mutation p.F608S 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 13 46170599 46170599 G A FAM194B Missense_Mutation p.A181V 0.10 tolerated(0.5) benign(0.036) TCGA-CA-6717-01 13 46542898 46542898 G A ZC3H13 Nonsense_Mutation p.R1261* 0.17 TCGA-CA-6717-01 13 46585630 46585630 G A ZC3H13 Missense_Mutation p.R170C 0.25 unknown(0) TCGA-CA-6717-01 13 46648108 46648108 G A CPB2 Missense_Mutation p.S164F 0.14 tolerated(0.06) possibly_damaging(0.489) TCGA-CA-6717-01 13 46705031 46705031 C T LCP1 Missense_Mutation p.D557N 0.12 deleterious(0.03) benign(0.42) TCGA-CA-6717-01 13 46733041 46733041 C A LCP1 Missense_Mutation p.V50L 0.19 tolerated(0.26) benign(0.007) TCGA-CA-6717-01 13 46802004 46802004 A G LRRC63 Missense_Mutation p.N148S 0.16 tolerated(0.08) benign(0.245) TCGA-CA-6717-01 13 46936725 46936725 C A KIAA0226L Missense_Mutation p.D312Y 0.10 deleterious(0) benign(0.187) TCGA-CA-6717-01 13 47255939 47255939 G T LRCH1 Nonsense_Mutation p.E215* 0.07 TCGA-CA-6717-01 13 47351719 47351719 A C ESD Missense_Mutation p.S214A 0.16 tolerated(0.46) benign(0.011) TCGA-CA-6717-01 13 47361207 47361207 A C ESD Missense_Mutation p.L36V 0.11 tolerated(0.07) possibly_damaging(0.652) TCGA-CA-6717-01 13 47409002 47409002 G A HTR2A Silent p.D462D 0.27 TCGA-CA-6717-01 13 47466629 47466629 G A HTR2A Missense_Mutation p.S170L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 13 48651218 48651218 T G MED4 3'UTR 0.15 TCGA-CA-6717-01 13 48919225 48919225 A C RB1 Missense_Mutation p.K130N 0.09 tolerated(0.11) benign(0.243) TCGA-CA-6717-01 13 48921969 48921969 A C RB1 Missense_Mutation p.E170A 0.17 tolerated(0.59) benign(0.185) TCGA-CA-6717-01 13 48953748 48953748 C T RB1 Missense_Mutation p.R451C 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 48986651 48986651 T G LPAR6 5'UTR 0.14 TCGA-CA-6717-01 13 48986882 48986882 T G LPAR6 5'UTR 0.08 TCGA-CA-6717-01 13 49037929 49037929 C A RB1 Silent p.I723I 0.25 TCGA-CA-6717-01 13 49064354 49064354 T G RCBTB2 Missense_Mutation p.N517H 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-CA-6717-01 13 49089839 49089839 A G RCBTB2 Silent p.D27D 0.16 TCGA-CA-6717-01 13 49281295 49281295 G T CYSLTR2 Missense_Mutation p.M114I 0.17 tolerated(0.68) benign(0.207) TCGA-CA-6717-01 13 49281843 49281843 A G CYSLTR2 Missense_Mutation p.N297S 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 49281905 49281905 T C CYSLTR2 Missense_Mutation p.S318P 0.16 deleterious(0.01) benign(0.193) TCGA-CA-6717-01 13 49282983 49282983 G A CYSLTR2 3'UTR 0.09 TCGA-CA-6717-01 13 49710545 49710545 T G FNDC3A Missense_Mutation p.L190V 0.27 tolerated(0.07) possibly_damaging(0.574) TCGA-CA-6717-01 13 49710654 49710654 T G FNDC3A Missense_Mutation p.I226S 0.18 tolerated(0.94) benign(0) TCGA-CA-6717-01 13 49841913 49841913 G T CDADC1 Nonsense_Mutation p.E240* 0.15 TCGA-CA-6717-01 13 50050935 50050935 T G SETDB2 Missense_Mutation p.F222C 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 50204565 50204565 G T ARL11 Splice_Site 0.24 TCGA-CA-6717-01 13 50206420 50206420 G A ARL11 3'UTR 0.18 TCGA-CA-6717-01 13 50207509 50207509 C T ARL11 3'UTR 0.19 TCGA-CA-6717-01 13 50207672 50207672 A G ARL11 3'UTR 0.10 TCGA-CA-6717-01 13 50489208 50489208 T G SPRYD7 Missense_Mutation p.Q194H 0.16 deleterious(0) possibly_damaging(0.758) TCGA-CA-6717-01 13 50588620 50588620 C T TRIM13 3'Flank 0.25 TCGA-CA-6717-01 13 50590231 50590231 C A TRIM13 3'Flank 0.08 TCGA-CA-6717-01 13 50590542 50590542 T G TRIM13 3'Flank 0.14 TCGA-CA-6717-01 13 50591345 50591345 T G TRIM13 3'Flank 0.23 TCGA-CA-6717-01 13 51530644 51530644 C A RNASEH2B 3'UTR 0.20 TCGA-CA-6717-01 13 51936001 51936001 C A SERPINE3 Missense_Mutation p.F381L 0.28 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 51942033 51942033 T G INTS6 Missense_Mutation p.K826N 0.15 tolerated(1) benign(0.115) TCGA-CA-6717-01 13 51943160 51943160 C A INTS6 Missense_Mutation p.K797N 0.22 tolerated(0.34) possibly_damaging(0.541) TCGA-CA-6717-01 13 52439718 52439718 G T CCDC70 Missense_Mutation p.E68D 0.20 tolerated(0.08) benign(0.342) TCGA-CA-6717-01 13 52440167 52440167 A G CCDC70 Missense_Mutation p.N218S 0.18 tolerated(0.18) benign(0.053) TCGA-CA-6717-01 13 52515306 52515306 C T ATP7B Missense_Mutation p.R1156H 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 52536039 52536039 A C ATP7B Missense_Mutation p.F627C 0.22 deleterious(0) benign(0.444) TCGA-CA-6717-01 13 52548328 52548328 G T ATP7B Missense_Mutation p.S343Y 0.29 tolerated(0.6) benign(0.025) TCGA-CA-6717-01 13 52606066 52606066 C T UTP14C 3'UTR 0.12 TCGA-CA-6717-01 13 52607521 52607521 T G UTP14C 3'UTR 0.09 TCGA-CA-6717-01 13 52649894 52649894 C A NEK5 Missense_Mutation p.E599D 0.10 deleterious(0.04) possibly_damaging(0.606) TCGA-CA-6717-01 13 52971671 52971671 T G THSD1 Missense_Mutation p.K239N 0.16 tolerated(0.06) possibly_damaging(0.694) TCGA-CA-6717-01 13 52989926 52989926 G A VPS36 3'UTR 0.10 TCGA-CA-6717-01 13 53048165 53048165 C T CKAP2 Missense_Mutation p.T584M 0.10 tolerated(0.07) benign(0.016) TCGA-CA-6717-01 13 53282690 53282690 T G LECT1 Missense_Mutation p.N257T 0.26 deleterious(0.02) benign(0.162) TCGA-CA-6717-01 13 53418632 53418632 C T PCDH8 3'UTR 0.24 TCGA-CA-6717-01 13 53616156 53616156 G A OLFM4 Missense_Mutation p.E157K 0.14 tolerated(0.1) benign(0.063) TCGA-CA-6717-01 13 53624575 53624575 G A OLFM4 Missense_Mutation p.S401N 0.10 tolerated(0.2) benign(0.107) TCGA-CA-6717-01 13 58209074 58209074 C T PCDH17 Silent p.F798F 0.38 TCGA-CA-6717-01 13 60737748 60737748 C T DIAPH3 Silent p.E51E 0.11 TCGA-CA-6717-01 13 61034649 61034649 G T TDRD3 Nonsense_Mutation p.E110* 0.15 TCGA-CA-6717-01 13 61083924 61083924 A C TDRD3 Missense_Mutation p.T296P 0.22 deleterious(0.03) probably_damaging(0.986) TCGA-CA-6717-01 13 67800204 67800204 C A PCDH9 Missense_Mutation p.R790M 0.12 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 13 67800524 67800524 G T PCDH9 Silent p.S683S 0.16 TCGA-CA-6717-01 13 67801448 67801448 C A PCDH9 Missense_Mutation p.E375D 0.13 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 13 73335851 73335851 T G DIS3 Missense_Mutation p.K815T 0.10 tolerated(0.07) benign(0.011) TCGA-CA-6717-01 13 73342998 73342998 T G DIS3 Missense_Mutation p.N603T 0.11 tolerated(0.57) benign(0.016) TCGA-CA-6717-01 13 73409469 73409469 C T PIBF1 Nonsense_Mutation p.R396* 0.06 TCGA-CA-6717-01 13 73505354 73505354 T G PIBF1 Missense_Mutation p.I594M 0.07 deleterious(0.01) benign(0.106) TCGA-CA-6717-01 13 73573009 73573009 C T PIBF1 Missense_Mutation p.S700F 0.08 tolerated(0.41) benign(0.02) TCGA-CA-6717-01 13 74339100 74339100 G A KLF12 Nonsense_Mutation p.R282* 0.12 TCGA-CA-6717-01 13 75860952 75860952 T G TBC1D4 Missense_Mutation p.K1291N 0.21 deleterious_low_confidence(0) benign(0.358) TCGA-CA-6717-01 13 75884108 75884108 G A TBC1D4 Nonsense_Mutation p.R855* 0.19 TCGA-CA-6717-01 13 76423338 76423338 G T LMO7 Missense_Mutation p.R1192I 0.19 deleterious(0) possibly_damaging(0.836) TCGA-CA-6717-01 13 77655626 77655626 T C MYCBP2 Missense_Mutation p.N3747S 0.11 benign(0.01) TCGA-CA-6717-01 13 77671639 77671639 A C MYCBP2 Missense_Mutation p.V3179G 0.10 benign(0.046) TCGA-CA-6717-01 13 78470738 78470738 C T EDNRB 3'UTR 0.12 TCGA-CA-6717-01 13 79190001 79190001 G T RNF219 Missense_Mutation p.S632Y 0.20 deleterious(0.03) possibly_damaging(0.786) TCGA-CA-6717-01 13 79190801 79190801 T G RNF219 Missense_Mutation p.E365D 0.11 deleterious(0.01) benign(0.405) TCGA-CA-6717-01 13 79219089 79219089 G A RNF219 Missense_Mutation p.S39L 0.28 deleterious(0) probably_damaging(0.966) TCGA-CA-6717-01 13 84453665 84453665 C T SLITRK1 Missense_Mutation p.E660K 0.13 deleterious(0.03) possibly_damaging(0.561) TCGA-CA-6717-01 13 84455475 84455475 C T SLITRK1 Silent p.P56P 0.12 TCGA-CA-6717-01 13 86368165 86368165 A C SLITRK6 Missense_Mutation p.L827V 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6717-01 13 86368979 86368980 - T SLITRK6 Frame_Shift_Ins p.E556Gfs*7 0.16 TCGA-CA-6717-01 13 86369099 86369099 C A SLITRK6 Missense_Mutation p.E515D 0.22 tolerated(0.19) probably_damaging(0.913) TCGA-CA-6717-01 13 88327968 88327968 A C SLITRK5 Missense_Mutation p.I109L 0.28 tolerated(0.19) benign(0.416) TCGA-CA-6717-01 13 88328028 88328028 C T SLITRK5 Missense_Mutation p.R129W 0.12 deleterious(0.03) benign(0.081) TCGA-CA-6717-01 13 88328199 88328199 G T SLITRK5 Missense_Mutation p.D186Y 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 13 88331152 88331152 G T SLITRK5 3'UTR 0.14 TCGA-CA-6717-01 13 88331393 88331393 G T SLITRK5 3'UTR 0.29 TCGA-CA-6717-01 13 92002904 92002904 C G MIR17HG RNA 0.14 TCGA-CA-6717-01 13 92380824 92380824 A G GPC5 Silent p.T353T 0.28 TCGA-CA-6717-01 13 93518802 93518802 G T GPC5 3'UTR 0.28 TCGA-CA-6717-01 13 95271729 95271729 A G GPR180 Missense_Mutation p.K232E 0.11 tolerated(0.15) benign(0.111) TCGA-CA-6717-01 13 95278284 95278284 A G GPR180 Missense_Mutation p.Y384C 0.15 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 13 95816649 95816649 G A ABCC4 Silent p.L720L 0.15 TCGA-CA-6717-01 13 95886874 95886874 A G ABCC4 Missense_Mutation p.I174T 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-CA-6717-01 13 96237088 96237088 T G DZIP1 Missense_Mutation p.K809T 0.12 deleterious(0.03) benign(0.282) TCGA-CA-6717-01 13 96239824 96239824 G A DZIP1 Silent p.I729I 0.11 TCGA-CA-6717-01 13 96592219 96592219 C A UGGT2 Nonsense_Mutation p.E602* 0.21 TCGA-CA-6717-01 13 96675891 96675891 A G UGGT2 Missense_Mutation p.F122L 0.13 deleterious(0.01) possibly_damaging(0.685) TCGA-CA-6717-01 13 97639571 97639571 C T OXGR1 Missense_Mutation p.R148Q 0.15 tolerated(0.13) benign(0.079) TCGA-CA-6717-01 13 97986571 97986571 G A MBNL2 Silent p.P72P 0.18 TCGA-CA-6717-01 13 98116750 98116750 A C RAP2A 3'UTR 0.21 TCGA-CA-6717-01 13 98666301 98666301 C T IPO5 Nonsense_Mutation p.R738* 0.25 TCGA-CA-6717-01 13 98828575 98828575 C A RNF113B Nonsense_Mutation p.E306* 0.16 TCGA-CA-6717-01 13 99061751 99061751 C T FARP1 Missense_Mutation p.T525M 0.11 tolerated(0.43) possibly_damaging(0.564) TCGA-CA-6717-01 13 99087925 99087925 T C FARP1 Silent p.L747L 0.24 TCGA-CA-6717-01 13 99361910 99361910 A G SLC15A1 Missense_Mutation p.V328A 0.13 deleterious(0.02) benign(0.073) TCGA-CA-6717-01 13 99364166 99364166 G A SLC15A1 Missense_Mutation p.T281M 0.20 tolerated(0.26) benign(0.006) TCGA-CA-6717-01 13 99374125 99374125 G A SLC15A1 Missense_Mutation p.A133V 0.15 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 13 99554692 99554692 C A DOCK9 Missense_Mutation p.K410N 0.13 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 13 99574316 99574316 C T DOCK9 Missense_Mutation p.V191M 0.10 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 14 100344907 100344907 C T EML1 Missense_Mutation p.R176C 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 14 100405563 100405563 G A EML1 Missense_Mutation p.D760N 0.25 deleterious(0) probably_damaging(0.918) TCGA-CA-6717-01 14 100793589 100793589 C A SLC25A47 Missense_Mutation p.S70Y 0.24 tolerated(1) possibly_damaging(0.501) TCGA-CA-6717-01 14 100795855 100795855 G A SLC25A47 Missense_Mutation p.R267Q 0.15 tolerated(0.05) probably_damaging(0.909) TCGA-CA-6717-01 14 100934421 100934421 C T WDR25 Missense_Mutation p.R296W 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 101347526 101347526 G A RTL1 Silent p.F1200F 0.29 TCGA-CA-6717-01 14 101348948 101348948 G T RTL1 Missense_Mutation p.F726L 0.22 tolerated(0.55) benign(0.002) TCGA-CA-6717-01 14 101350732 101350732 G A RTL1 Nonsense_Mutation p.R132* 0.21 TCGA-CA-6717-01 14 101351094 101351094 G A RTL1 Missense_Mutation p.T11M 0.18 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-CA-6717-01 14 101351100 101351100 A C RTL1 Missense_Mutation p.F9C 0.32 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-CA-6717-01 14 101496012 101496012 T G MIR494 RNA 0.08 TCGA-CA-6717-01 14 101521782 101521782 A G MIR485 RNA 0.21 TCGA-CA-6717-01 14 101521797 101521797 G T MIR485 RNA 0.21 TCGA-CA-6717-01 14 101531830 101531830 C A MIR412 RNA 0.07 TCGA-CA-6717-01 14 102356580 102356580 T C PPP2R5C Silent p.I243I 0.18 TCGA-CA-6717-01 14 102372920 102372920 T A PPP2R5C Intron 0.21 TCGA-CA-6717-01 14 102378838 102378838 C T PPP2R5C Intron 0.16 TCGA-CA-6717-01 14 102551099 102551099 A G HSP90AA1 Silent p.N422N 0.11 TCGA-CA-6717-01 14 102729925 102729925 T G MOK Missense_Mutation p.I81L 0.14 tolerated(0.06) possibly_damaging(0.483) TCGA-CA-6717-01 14 103173723 103173723 C T RCOR1 Silent p.I178I 0.23 TCGA-CA-6717-01 14 103429449 103429449 C A CDC42BPB Nonsense_Mutation p.E924* 0.18 TCGA-CA-6717-01 14 103444499 103444499 T C CDC42BPB Missense_Mutation p.H395R 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 103574021 103574021 G A EXOC3L4 Silent p.A585A 0.13 TCGA-CA-6717-01 14 103923542 103923542 T G MARK3 Missense_Mutation p.F159C 0.09 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 14 104436888 104436888 G A TDRD9 Missense_Mutation p.R259Q 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 104441844 104441844 T C TDRD9 Missense_Mutation p.V322A 0.13 deleterious(0) benign(0.405) TCGA-CA-6717-01 14 104488562 104488562 T G TDRD9 Missense_Mutation p.I834S 0.20 deleterious(0) benign(0.028) TCGA-CA-6717-01 14 104488591 104488591 G A TDRD9 Missense_Mutation p.E844K 0.18 tolerated(0.06) benign(0.097) TCGA-CA-6717-01 14 104491967 104491967 C A TDRD9 Missense_Mutation p.L929I 0.11 tolerated(0.1) possibly_damaging(0.576) TCGA-CA-6717-01 14 104492024 104492024 G A TDRD9 Missense_Mutation p.D948N 0.11 tolerated(0.45) benign(0.196) TCGA-CA-6717-01 14 105213335 105213335 T C ADSSL1 Missense_Mutation p.F500L 0.11 tolerated_low_confidence(0.07) probably_damaging(0.947) TCGA-CA-6717-01 14 105409986 105409986 C T AHNAK2 Silent p.V3934V 0.12 TCGA-CA-6717-01 14 105414151 105414151 T C AHNAK2 Missense_Mutation p.Q2546R 0.16 benign(0.038) TCGA-CA-6717-01 14 105416691 105416691 C T AHNAK2 Silent p.G1699G 0.30 TCGA-CA-6717-01 14 105419993 105419993 T G AHNAK2 Missense_Mutation p.K599Q 0.10 probably_damaging(0.986) TCGA-CA-6717-01 14 105517634 105517634 G A GPR132 Silent p.C280C 0.28 TCGA-CA-6717-01 14 105930803 105930803 C T MTA1 Missense_Mutation p.R415C 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 105964211 105964211 A C C14orf80 Missense_Mutation p.E283A 0.09 tolerated(0.17) benign(0.026) TCGA-CA-6717-01 14 106320639 106320639 G A IGHM Missense_Mutation p.R391W 0.21 tolerated(0.1) possibly_damaging(0.725) TCGA-CA-6717-01 14 106321673 106321673 G A IGHM Silent p.S187S 0.11 TCGA-CA-6717-01 14 106610432 106610432 C T IGHV3-15 Missense_Mutation p.D80N 0.17 tolerated_low_confidence(0.29) benign(0.001) TCGA-CA-6717-01 14 106622075 106622075 C T IGHV3-16 Missense_Mutation p.R57H 0.17 deleterious_low_confidence(0.03) benign(0.165) TCGA-CA-6717-01 14 106641686 106641686 G A IGHV1-18 Silent p.N76N 0.09 TCGA-CA-6717-01 14 106667789 106667789 A G IGHV3-20 Missense_Mutation p.F48S 0.11 deleterious_low_confidence(0.01) benign(0.343) TCGA-CA-6717-01 14 106725262 106725262 G A IGHV3-23 Missense_Mutation p.T97M 0.11 tolerated_low_confidence(0.2) benign(0.052) TCGA-CA-6717-01 14 106757770 106757770 G T IGHV2-26 Silent p.S79S 0.11 TCGA-CA-6717-01 14 106815854 106815854 A G IGHV3-33 Silent p.D73D 0.17 TCGA-CA-6717-01 14 106926257 106926257 T G IGHV3-43 Missense_Mutation p.K95N 0.24 tolerated_low_confidence(0.06) benign(0.404) TCGA-CA-6717-01 14 107013126 107013126 G A IGHV3-49 Missense_Mutation p.R57C 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.605) TCGA-CA-6717-01 14 107048744 107048744 A G IGHV3-53 Silent p.N92N 0.19 TCGA-CA-6717-01 14 19377673 19377673 T G OR11H12 Missense_Mutation p.F27C 0.08 deleterious(0) benign(0.15) TCGA-CA-6717-01 14 19377848 19377848 G A OR11H12 Silent p.E85E 0.28 TCGA-CA-6717-01 14 19559150 19559150 G A POTEG Missense_Mutation p.E266K 0.15 deleterious(0) possibly_damaging(0.687) TCGA-CA-6717-01 14 19562075 19562075 T G POTEG Missense_Mutation p.L298V 0.18 tolerated(0.7) benign(0.434) TCGA-CA-6717-01 14 20215602 20215602 G A OR4Q3 Missense_Mutation p.D6N 0.09 tolerated(0.55) benign(0.001) TCGA-CA-6717-01 14 20248810 20248810 C T OR4M1 Missense_Mutation p.S110L 0.05 deleterious(0) benign(0.407) TCGA-CA-6717-01 14 20249332 20249332 T G OR4M1 Missense_Mutation p.L284R 0.16 deleterious(0.01) benign(0.008) TCGA-CA-6717-01 14 20344671 20344671 T G OR4K2 Missense_Mutation p.I82S 0.08 deleterious(0) possibly_damaging(0.821) TCGA-CA-6717-01 14 20344916 20344916 C T OR4K2 Missense_Mutation p.L164F 0.12 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 14 20389539 20389539 T C OR4K5 Silent p.Y258Y 0.11 TCGA-CA-6717-01 14 20404185 20404185 T C OR4K1 Silent p.Y120Y 0.06 TCGA-CA-6717-01 14 20404532 20404532 C A OR4K1 Missense_Mutation p.A236D 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-CA-6717-01 14 20443688 20443688 C A OR4K15 Nonsense_Mutation p.S4* 0.11 TCGA-CA-6717-01 14 20483282 20483282 T C OR4K14 Missense_Mutation p.Q24R 0.09 deleterious(0.01) possibly_damaging(0.87) TCGA-CA-6717-01 14 20502846 20502846 C T OR4K13 Silent p.Q24Q 0.12 TCGA-CA-6717-01 14 20528553 20528553 T G OR4L1 Missense_Mutation p.I117S 0.10 tolerated(0.55) benign(0.003) TCGA-CA-6717-01 14 20528556 20528556 T C OR4L1 Missense_Mutation p.M118T 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 14 20528915 20528915 T C OR4L1 Missense_Mutation p.S238P 0.07 deleterious(0.01) possibly_damaging(0.521) TCGA-CA-6717-01 14 20585581 20585581 T G OR4K17 Missense_Mutation p.S6A 0.10 deleterious_low_confidence(0) benign(0.03) TCGA-CA-6717-01 14 20586322 20586322 C A OR4K17 Missense_Mutation p.L253I 0.29 tolerated(0.08) benign(0.376) TCGA-CA-6717-01 14 20612069 20612069 C A OR4N5 Missense_Mutation p.L59I 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 14 20665493 20665493 T C OR11G2 5'Flank 0.22 TCGA-CA-6717-01 14 20692405 20692405 T G OR11H6 Silent p.V179V 0.08 TCGA-CA-6717-01 14 20711037 20711037 T C OR11H4 Silent p.G29G 0.09 TCGA-CA-6717-01 14 20770096 20770096 C T TTC5 Missense_Mutation p.R27Q 0.28 deleterious(0.01) possibly_damaging(0.833) TCGA-CA-6717-01 14 20847149 20847149 T C TEP1 Missense_Mutation p.H1748R 0.14 tolerated(0.23) benign(0.004) TCGA-CA-6717-01 14 20850836 20850836 C T TEP1 Silent p.P1362P 0.12 TCGA-CA-6717-01 14 20978931 20978931 G T RNASE10 Missense_Mutation p.A101S 0.16 tolerated(0.41) benign(0.011) TCGA-CA-6717-01 14 21025195 21025195 G A RNASE9 Missense_Mutation p.P17S 0.12 tolerated(0.74) benign(0.334) TCGA-CA-6717-01 14 21058662 21058662 C T RNASE12 Missense_Mutation p.R74Q 0.13 tolerated(0.86) benign(0.015) TCGA-CA-6717-01 14 21109453 21109453 C T OR6S1 Missense_Mutation p.R133H 0.11 tolerated(0.53) benign(0.001) TCGA-CA-6717-01 14 21360154 21360154 C A RNASE3 Missense_Mutation p.F103L 0.19 tolerated(0.64) benign(0.003) TCGA-CA-6717-01 14 21498865 21498865 G A TPPP2 Missense_Mutation p.G42D 0.21 deleterious(0.02) benign(0.383) TCGA-CA-6717-01 14 21502117 21502117 C T RNASE13 Missense_Mutation p.V111I 0.07 tolerated(1) benign(0.007) TCGA-CA-6717-01 14 21511380 21511380 T G RNASE7 Missense_Mutation p.S77A 0.13 tolerated(0.38) benign(0.001) TCGA-CA-6717-01 14 21785901 21785901 G A RPGRIP1 Missense_Mutation p.E400K 0.09 tolerated(0.19) benign(0.356) TCGA-CA-6717-01 14 21795963 21795963 C T RPGRIP1 Silent p.S964S 0.18 TCGA-CA-6717-01 14 21811274 21811274 A T RPGRIP1 Missense_Mutation p.K1140I 0.11 deleterious(0) possibly_damaging(0.836) TCGA-CA-6717-01 14 21828652 21828652 A C SUPT16H Missense_Mutation p.I699M 0.21 deleterious(0) possibly_damaging(0.885) TCGA-CA-6717-01 14 21829114 21829114 G T SUPT16H Missense_Mutation p.D649E 0.19 tolerated(0.08) possibly_damaging(0.874) TCGA-CA-6717-01 14 21860672 21860672 G T CHD8 Silent p.I2255I 0.13 TCGA-CA-6717-01 14 21863509 21863509 A G CHD8 Silent p.G1710G 0.11 TCGA-CA-6717-01 14 21873531 21873531 A C CHD8 Missense_Mutation p.I1048M 0.22 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 14 21875110 21875110 G A CHD8 Missense_Mutation p.R938C 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6717-01 14 21876569 21876569 A T CHD8 Missense_Mutation p.F878I 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 14 21883953 21883953 A C CHD8 Silent p.P610P 0.22 TCGA-CA-6717-01 14 21894348 21894348 T G CHD8 Missense_Mutation p.N552T 0.23 tolerated(0.36) benign(0.344) TCGA-CA-6717-01 14 21960791 21960791 C T TOX4 Missense_Mutation p.P339L 0.18 deleterious(0.05) benign(0.052) TCGA-CA-6717-01 14 22038569 22038569 A C OR10G3 Missense_Mutation p.Y103D 0.27 deleterious(0) probably_damaging(0.977) TCGA-CA-6717-01 14 22133337 22133337 T C OR4E2 Missense_Mutation p.F14S 0.09 deleterious(0.02) possibly_damaging(0.772) TCGA-CA-6717-01 14 23531679 23531679 G A ACIN1 Silent p.T1037T 0.22 TCGA-CA-6717-01 14 23817424 23817424 G A SLC22A17 Nonsense_Mutation p.R262* 0.14 TCGA-CA-6717-01 14 23886373 23886373 T G MYH7 Missense_Mutation p.K1503T 0.15 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 14 23887430 23887430 G A MYH7 Silent p.L1386L 0.23 TCGA-CA-6717-01 14 23894008 23894008 C A MYH7 Missense_Mutation p.E883D 0.23 deleterious(0.02) benign(0.306) TCGA-CA-6717-01 14 24436604 24436604 C T DHRS4 Intron 0.08 TCGA-CA-6717-01 14 24520083 24520083 C A LRRC16B 5'Flank 0.25 TCGA-CA-6717-01 14 24550520 24550520 A C NRL Missense_Mutation p.D213E 0.17 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 14 24619433 24619433 C T RNF31 Missense_Mutation p.R325W 0.14 tolerated(0.05) benign(0.027) TCGA-CA-6717-01 14 24655146 24655146 C T IPO4 Missense_Mutation p.E364K 0.12 tolerated(0.1) benign(0.102) TCGA-CA-6717-01 14 24662132 24662132 C T TM9SF1 Missense_Mutation p.R230Q 0.29 tolerated(0.72) benign(0.013) TCGA-CA-6717-01 14 24684996 24684996 A C MDP1 Silent p.T15T 0.22 TCGA-CA-6717-01 14 24701477 24701477 C A NEDD8 5'UTR 0.20 TCGA-CA-6717-01 14 24793590 24793590 C T ADCY4 Missense_Mutation p.A611T 0.19 tolerated(0.45) possibly_damaging(0.793) TCGA-CA-6717-01 14 24897022 24897022 G T CBLN3 Missense_Mutation p.F197L 0.14 deleterious(0.01) probably_damaging(0.934) TCGA-CA-6717-01 14 24897533 24897533 G A CBLN3 Missense_Mutation p.R127W 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6717-01 14 24909408 24909408 G A SDR39U1 Nonsense_Mutation p.R255* 0.31 TCGA-CA-6717-01 14 24975729 24975729 G T CMA1 Missense_Mutation p.F97L 0.19 deleterious(0.03) possibly_damaging(0.686) TCGA-CA-6717-01 14 25043681 25043681 G A CTSG Nonsense_Mutation p.R122* 0.22 TCGA-CA-6717-01 14 25044519 25044519 A C CTSG Missense_Mutation p.F52C 0.18 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 14 26939577 26939577 A C NOVA1 Intron 0.13 TCGA-CA-6717-01 14 29261145 29261145 A C C14orf23 Missense_Mutation p.N61T 0.15 tolerated_low_confidence(0.28) possibly_damaging(0.607) TCGA-CA-6717-01 14 29261182 29261182 T G C14orf23 Missense_Mutation p.I73M 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.506) TCGA-CA-6717-01 14 30100143 30100143 C T PRKD1 Missense_Mutation p.E493K 0.15 deleterious(0.04) probably_damaging(0.994) TCGA-CA-6717-01 14 30103696 30103696 T G PRKD1 Missense_Mutation p.K414N 0.11 deleterious(0) possibly_damaging(0.821) TCGA-CA-6717-01 14 31061590 31061590 G A G2E3 Missense_Mutation p.R100Q 0.23 tolerated(0.19) probably_damaging(0.996) TCGA-CA-6717-01 14 31085547 31085547 C T G2E3 Missense_Mutation p.P643L 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 31346827 31346827 G T COCH Missense_Mutation p.E44D 0.19 tolerated(0.31) benign(0.001) TCGA-CA-6717-01 14 31355238 31355238 C A COCH Silent p.I399I 0.11 TCGA-CA-6717-01 14 31614010 31614010 T A HECTD1 Intron 0.10 TCGA-CA-6717-01 14 32559882 32559882 G A ARHGAP5 Missense_Mutation p.A3T 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 32563564 32563564 A C ARHGAP5 Missense_Mutation p.K1230T 0.13 tolerated(0.4) benign(0.009) TCGA-CA-6717-01 14 32586363 32586363 G T ARHGAP5 Missense_Mutation p.K1245N 0.10 deleterious(0.02) probably_damaging(0.98) TCGA-CA-6717-01 14 33014667 33014667 C T AKAP6 Nonsense_Mutation p.R270* 0.19 TCGA-CA-6717-01 14 33291133 33291133 A C AKAP6 Missense_Mutation p.T1372P 0.13 tolerated(0.05) possibly_damaging(0.83) TCGA-CA-6717-01 14 33291974 33291974 G A AKAP6 Missense_Mutation p.R1652Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 14 33293818 33293818 G T AKAP6 Nonsense_Mutation p.E2267* 0.16 TCGA-CA-6717-01 14 35182583 35182583 G T CFL2 Missense_Mutation p.T63N 0.14 tolerated(0.11) benign(0.096) TCGA-CA-6717-01 14 35480862 35480862 T G SRP54 Silent p.A211A 0.21 TCGA-CA-6717-01 14 35550500 35550500 C A FAM177A1 3'UTR 0.25 TCGA-CA-6717-01 14 35554940 35554940 G T PPP2R3C Silent p.I406I 0.16 TCGA-CA-6717-01 14 36004176 36004176 A G INSM2 Missense_Mutation p.K240E 0.27 deleterious(0) possibly_damaging(0.512) TCGA-CA-6717-01 14 36006219 36006219 T C INSM2 3'UTR 0.19 TCGA-CA-6717-01 14 36097149 36097149 G T RALGAPA1 Missense_Mutation p.Q1496K 0.12 tolerated(0.07) benign(0.02) TCGA-CA-6717-01 14 36159210 36159210 C A RALGAPA1 Splice_Site p.X756_splice 0.10 TCGA-CA-6717-01 14 37135749 37135749 G A PAX9 Silent p.P238P 0.29 TCGA-CA-6717-01 14 38295515 38295515 A C TTC6 Missense_Mutation p.N1697T 0.18 tolerated(1) probably_damaging(0.986) TCGA-CA-6717-01 14 38311413 38311413 C T TTC6 Missense_Mutation p.R1860C 0.13 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 14 38724076 38724076 A C CLEC14A Silent p.T384T 0.19 TCGA-CA-6717-01 14 38725536 38725536 C T CLEC14A 5'UTR 0.21 TCGA-CA-6717-01 14 39512077 39512077 C A SEC23A Splice_Site p.X634_splice 0.21 TCGA-CA-6717-01 14 39717210 39717210 G T MIA2 Nonsense_Mutation p.E478* 0.11 TCGA-CA-6717-01 14 39769117 39769117 A C CTAGE5 Missense_Mutation p.K246T 0.10 deleterious(0) benign(0.326) TCGA-CA-6717-01 14 39796121 39796121 G T CTAGE5 Nonsense_Mutation p.E581* 0.10 TCGA-CA-6717-01 14 44975559 44975559 T A FSCB Missense_Mutation p.K211I 0.09 tolerated(0.18) benign(0.275) TCGA-CA-6717-01 14 45369824 45369824 C A C14orf28 Missense_Mutation p.F62L 0.10 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-CA-6717-01 14 45415046 45415046 C T KLHL28 Missense_Mutation p.R29H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 14 45585387 45585387 G A FKBP3 3'UTR 0.16 TCGA-CA-6717-01 14 45605469 45605469 G A FANCM Missense_Mutation p.A79T 0.21 deleterious(0.03) benign(0.061) TCGA-CA-6717-01 14 45605591 45605591 T C FANCM Silent p.F119F 0.14 TCGA-CA-6717-01 14 45636374 45636374 A C FANCM Intron 0.21 TCGA-CA-6717-01 14 45645065 45645065 T C FANCM Silent p.C1036C 0.09 TCGA-CA-6717-01 14 45645259 45645259 A G FANCM Missense_Mutation p.Q1101R 0.13 deleterious(0.04) benign(0.215) TCGA-CA-6717-01 14 45657013 45657013 T C FANCM Missense_Mutation p.S1568P 0.07 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 14 45658207 45658207 A C FANCM Missense_Mutation p.K1661T 0.15 tolerated(0.12) benign(0.08) TCGA-CA-6717-01 14 45665712 45665712 G T FANCM Missense_Mutation p.R1893I 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 14 45706856 45706856 T C MIS18BP1 Silent p.K404K 0.20 TCGA-CA-6717-01 14 47120232 47120232 A C RPL10L 3'UTR 0.26 TCGA-CA-6717-01 14 50118073 50118073 T G POLE2 Missense_Mutation p.I412L 0.12 deleterious(0.04) benign(0.015) TCGA-CA-6717-01 14 50133108 50133108 C T POLE2 Silent p.L172L 0.16 TCGA-CA-6717-01 14 50296110 50296110 C T NEMF Missense_Mutation p.R327Q 0.07 deleterious(0.01) possibly_damaging(0.658) TCGA-CA-6717-01 14 50318570 50318570 T G NEMF Missense_Mutation p.N28T 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-CA-6717-01 14 50360474 50360474 A C ARF6 Missense_Mutation p.K7T 0.10 tolerated_low_confidence(0.08) benign(0.275) TCGA-CA-6717-01 14 50360618 50360618 A G ARF6 Missense_Mutation p.K55R 0.12 tolerated_low_confidence(0.07) benign(0.252) TCGA-CA-6717-01 14 50582790 50582790 T G VCPKMT Missense_Mutation p.K125T 0.22 deleterious(0.02) benign(0.139) TCGA-CA-6717-01 14 50619798 50619798 T C SOS2 Silent p.S717S 0.10 TCGA-CA-6717-01 14 50788263 50788263 T C ATP5S Missense_Mutation p.S35P 0.10 tolerated(0.2) benign(0.013) TCGA-CA-6717-01 14 50792356 50792356 T G ATP5S Missense_Mutation p.L188R 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 14 50802826 50802826 T C CDKL1 Intron 0.21 TCGA-CA-6717-01 14 51054717 51054717 T G ATL1 Missense_Mutation p.V68G 0.11 deleterious(0) probably_damaging(0.917) TCGA-CA-6717-01 14 51094908 51094908 G T ATL1 Nonsense_Mutation p.E427* 0.08 TCGA-CA-6717-01 14 51224487 51224487 T A NIN Missense_Mutation p.E1087D 0.25 deleterious(0.04) probably_damaging(0.995) TCGA-CA-6717-01 14 51347254 51347254 A G ABHD12B Silent p.P140P 0.09 TCGA-CA-6717-01 14 52192559 52192559 C T FRMD6 Missense_Mutation p.R519C 0.09 deleterious(0) possibly_damaging(0.708) TCGA-CA-6717-01 14 52458150 52458150 C A C14orf166 Missense_Mutation p.F59L 0.15 tolerated(0.64) benign(0.001) TCGA-CA-6717-01 14 52508864 52508864 G A NID2 Missense_Mutation p.A595V 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 14 52520386 52520386 C T NID2 Missense_Mutation p.R447Q 0.11 tolerated(0.62) benign(0.001) TCGA-CA-6717-01 14 52520798 52520798 T G NID2 Missense_Mutation p.N337H 0.11 deleterious(0.03) benign(0.372) TCGA-CA-6717-01 14 52906085 52906085 G T TXNDC16 Silent p.I677I 0.29 TCGA-CA-6717-01 14 53099000 53099000 T G GPR137C Missense_Mutation p.N280K 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-CA-6717-01 14 53175527 53175527 G A PSMC6 Missense_Mutation p.R98H 0.07 deleterious(0.04) benign(0.118) TCGA-CA-6717-01 14 53245086 53245086 T G GNPNAT1 Missense_Mutation p.K166N 0.10 tolerated(0.13) benign(0.002) TCGA-CA-6717-01 14 53326377 53326377 G A FERMT2 Missense_Mutation p.R602W 0.07 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 14 53385887 53385887 G T FERMT2 Missense_Mutation p.F115L 0.11 deleterious(0) probably_damaging(0.96) TCGA-CA-6717-01 14 53513388 53513388 A G DDHD1 3'UTR 0.14 TCGA-CA-6717-01 14 54944788 54944788 G T GMFB 3'UTR 0.07 TCGA-CA-6717-01 14 55203979 55203979 T C SAMD4A Missense_Mutation p.F318S 0.13 deleterious(0.03) possibly_damaging(0.854) TCGA-CA-6717-01 14 55236927 55236927 C T SAMD4A Nonsense_Mutation p.R568* 0.16 TCGA-CA-6717-01 14 55462511 55462511 C A WDHD1 Missense_Mutation p.K321N 0.17 tolerated(0.07) benign(0.13) TCGA-CA-6717-01 14 55514226 55514226 T C SOCS4 3'UTR 0.10 TCGA-CA-6717-01 14 55515266 55515266 T G SOCS4 3'UTR 0.18 TCGA-CA-6717-01 14 55515588 55515588 T G SOCS4 3'UTR 0.10 TCGA-CA-6717-01 14 55515890 55515890 C T SOCS4 3'UTR 0.16 TCGA-CA-6717-01 14 55611842 55611842 A G LGALS3 Silent p.V202V 0.14 TCGA-CA-6717-01 14 55629770 55629770 G T DLGAP5 Missense_Mutation p.F524L 0.13 tolerated(0.08) probably_damaging(0.986) TCGA-CA-6717-01 14 55818025 55818025 A C FBXO34 Missense_Mutation p.N306T 0.14 tolerated(0.09) possibly_damaging(0.722) TCGA-CA-6717-01 14 56078747 56078747 A C KTN1 5'UTR 0.21 TCGA-CA-6717-01 14 57103260 57103260 G T TMEM260 Nonsense_Mutation p.E605* 0.09 TCGA-CA-6717-01 14 57947440 57947440 T C C14orf105 Silent p.G176G 0.10 TCGA-CA-6717-01 14 58036680 58036680 G T SLC35F4 Missense_Mutation p.L354I 0.18 tolerated(0.34) benign(0.038) TCGA-CA-6717-01 14 58604892 58604892 T C C14orf37 Silent p.Q395Q 0.10 TCGA-CA-6717-01 14 58605735 58605735 A C C14orf37 Silent p.P114P 0.11 TCGA-CA-6717-01 14 58718848 58718848 G T PSMA3 Missense_Mutation p.G39V 0.11 deleterious(0.02) possibly_damaging(0.815) TCGA-CA-6717-01 14 58785488 58785488 G T ARID4A Missense_Mutation p.K138N 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 14 58832908 58832908 G A ARID4A Silent p.P1161P 0.25 TCGA-CA-6717-01 14 58877620 58877620 C T TIMM9 Missense_Mutation p.E26K 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 14 58895021 58895021 G T KIAA0586 Missense_Mutation p.K25N 0.21 tolerated(0.1) benign(0.1) TCGA-CA-6717-01 14 58899168 58899168 A C KIAA0586 Missense_Mutation p.K147Q 0.10 deleterious(0) probably_damaging(0.947) TCGA-CA-6717-01 14 58927725 58927725 G T KIAA0586 Missense_Mutation p.V689L 0.10 tolerated(0.17) benign(0.149) TCGA-CA-6717-01 14 59108314 59108314 T G DACT1 Missense_Mutation p.F161L 0.14 deleterious(0) probably_damaging(0.952) TCGA-CA-6717-01 14 59112389 59112389 A G DACT1 Missense_Mutation p.T350A 0.29 tolerated(0.8) possibly_damaging(0.686) TCGA-CA-6717-01 14 59114802 59114802 T G DACT1 3'Flank 0.08 TCGA-CA-6717-01 14 59730281 59730281 G A DAAM1 Missense_Mutation p.R29Q 0.18 tolerated(0.48) unknown(0) TCGA-CA-6717-01 14 59797257 59797257 C T DAAM1 Nonsense_Mutation p.R471* 0.07 TCGA-CA-6717-01 14 59965582 59965582 T C JKAMP Missense_Mutation p.F199S 0.13 deleterious(0.01) possibly_damaging(0.881) TCGA-CA-6717-01 14 60076877 60076877 A C RTN1 Intron 0.22 TCGA-CA-6717-01 14 60212898 60212898 G T RTN1 Silent p.I181I 0.13 TCGA-CA-6717-01 14 60591289 60591289 T G PCNXL4 Silent p.T566T 0.23 TCGA-CA-6717-01 14 60620760 60620760 C A DHRS7 Missense_Mutation p.D104Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 14 60712682 60712682 G T PPM1A Missense_Mutation p.K39N 0.24 unknown(0) TCGA-CA-6717-01 14 60938358 60938358 C A C14orf39 Missense_Mutation p.K141N 0.19 deleterious(0.03) possibly_damaging(0.895) TCGA-CA-6717-01 14 60950418 60950418 T G C14orf39 Missense_Mutation p.N75T 0.15 tolerated(0.11) possibly_damaging(0.859) TCGA-CA-6717-01 14 60951607 60951607 C A C14orf39 Missense_Mutation p.R33I 0.08 deleterious(0.01) possibly_damaging(0.883) TCGA-CA-6717-01 14 61180413 61180413 C T SIX4 Silent p.G686G 0.19 TCGA-CA-6717-01 14 61180679 61180679 T G SIX4 Missense_Mutation p.N598H 0.24 deleterious_low_confidence(0) benign(0.224) TCGA-CA-6717-01 14 61186924 61186924 G T SIX4 Missense_Mutation p.S368Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 14 61497201 61497201 C A SLC38A6 Missense_Mutation p.P148T 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 61517301 61517301 A G SLC38A6 Missense_Mutation p.K333E 0.09 deleterious(0) possibly_damaging(0.81) TCGA-CA-6717-01 14 61917665 61917665 A G PRKCH Missense_Mutation p.M270V 0.12 tolerated(1) benign(0.001) TCGA-CA-6717-01 14 62204854 62204854 T G HIF1A Missense_Mutation p.D457E 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-CA-6717-01 14 62234030 62234030 G A SNAPC1 Missense_Mutation p.R130Q 0.10 tolerated(0.05) probably_damaging(0.992) TCGA-CA-6717-01 14 62244829 62244829 A C SNAPC1 Missense_Mutation p.K245Q 0.06 tolerated(0.14) benign(0.003) TCGA-CA-6717-01 14 62259546 62259546 A C SNAPC1 Missense_Mutation p.K333T 0.15 tolerated(0.06) possibly_damaging(0.478) TCGA-CA-6717-01 14 62462710 62462710 G T SYT16 5'UTR 0.15 TCGA-CA-6717-01 14 63246498 63246498 A C KCNH5 Missense_Mutation p.F656C 0.12 deleterious(0) probably_damaging(0.942) TCGA-CA-6717-01 14 63671659 63671659 T C RHOJ Silent p.C24C 0.12 TCGA-CA-6717-01 14 63842684 63842684 C T PPP2R5E 3'UTR 0.21 TCGA-CA-6717-01 14 63863370 63863370 C A PPP2R5E Missense_Mutation p.R205I 0.17 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 14 64453240 64453240 G T SYNE2 Nonsense_Mutation p.E740* 0.16 TCGA-CA-6717-01 14 64465727 64465727 C T SYNE2 Missense_Mutation p.S1150F 0.10 benign(0.252) TCGA-CA-6717-01 14 64469775 64469775 A C SYNE2 Missense_Mutation p.K1375T 0.24 benign(0.135) TCGA-CA-6717-01 14 64483206 64483206 G T SYNE2 Nonsense_Mutation p.E1582* 0.21 TCGA-CA-6717-01 14 64488690 64488690 A C SYNE2 Missense_Mutation p.D1823A 0.10 benign(0.126) TCGA-CA-6717-01 14 64497875 64497875 G T SYNE2 Missense_Mutation p.D2341Y 0.13 probably_damaging(0.999) TCGA-CA-6717-01 14 64516568 64516568 G A SYNE2 Silent p.L2539L 0.27 TCGA-CA-6717-01 14 64599075 64599075 T G SYNE2 Missense_Mutation p.F4811L 0.11 benign(0.238) TCGA-CA-6717-01 14 64612807 64612807 C A SYNE2 Missense_Mutation p.L5169I 0.08 probably_damaging(0.998) TCGA-CA-6717-01 14 64655277 64655277 C T SYNE2 Missense_Mutation p.R5908C 0.23 probably_damaging(0.999) TCGA-CA-6717-01 14 64749580 64749580 C A ESR2 Nonsense_Mutation p.E42* 0.26 TCGA-CA-6717-01 14 64906956 64906956 A C MTHFD1 Missense_Mutation p.K596T 0.09 tolerated(0.14) benign(0.012) TCGA-CA-6717-01 14 64954668 64954668 C T ZBTB25 Missense_Mutation p.R94H 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 64989129 64989129 A C ZBTB1 Missense_Mutation p.K303Q 0.28 tolerated(0.26) probably_damaging(0.991) TCGA-CA-6717-01 14 64990007 64990007 A G ZBTB1 Silent p.E595E 0.23 TCGA-CA-6717-01 14 64991384 64991384 T C ZBTB1 3'UTR 0.12 TCGA-CA-6717-01 14 65007723 65007723 C T HSPA2 Silent p.I52I 0.19 TCGA-CA-6717-01 14 65499347 65499347 T G FNTB Missense_Mutation p.S209A 0.17 tolerated(0.17) benign(0.02) TCGA-CA-6717-01 14 65560460 65560460 A G MAX Missense_Mutation p.L46S 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 66083893 66083893 A C FUT8 Intron 0.15 TCGA-CA-6717-01 14 66136101 66136101 G T FUT8 Missense_Mutation p.Q246H 0.12 tolerated(0.18) benign(0.001) TCGA-CA-6717-01 14 66209075 66209075 C T FUT8 Nonsense_Mutation p.R559* 0.09 TCGA-CA-6717-01 14 66965139 66965139 A T LINC00238 RNA 0.17 TCGA-CA-6717-01 14 67664858 67664858 T G FAM71D 5'UTR 0.20 TCGA-CA-6717-01 14 67779399 67779399 T C MPP5 Silent p.D399D 0.10 TCGA-CA-6717-01 14 67859125 67859125 T C PLEK2 Missense_Mutation p.K230R 0.11 tolerated(0.64) benign(0) TCGA-CA-6717-01 14 68040573 68040573 T G PLEKHH1 Missense_Mutation p.I632S 0.13 deleterious(0) benign(0.314) TCGA-CA-6717-01 14 68113718 68113718 G A ARG2 Missense_Mutation p.R233Q 0.14 tolerated(0.41) benign(0.01) TCGA-CA-6717-01 14 68145000 68145000 T C RDH11 3'UTR 0.13 TCGA-CA-6717-01 14 68145106 68145106 G A RDH11 Missense_Mutation p.R297C 0.16 tolerated(0.07) possibly_damaging(0.847) TCGA-CA-6717-01 14 68192797 68192797 A G RDH12 Missense_Mutation p.N125D 0.28 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 14 68268818 68268818 C T ZFYVE26 Silent p.A539A 0.10 TCGA-CA-6717-01 14 69351016 69351016 T G ACTN1 Missense_Mutation p.K502Q 0.22 tolerated(0.36) benign(0.003) TCGA-CA-6717-01 14 69521373 69521373 T C DCAF5 Missense_Mutation p.N677S 0.18 tolerated_low_confidence(0.31) benign(0.003) TCGA-CA-6717-01 14 69701646 69701646 G T EXD2 Missense_Mutation p.R316I 0.24 deleterious(0.01) possibly_damaging(0.674) TCGA-CA-6717-01 14 69908975 69908975 C A SLC39A9 Missense_Mutation p.S132Y 0.23 deleterious(0) benign(0.366) TCGA-CA-6717-01 14 69994979 69994979 A C PLEKHD1 Missense_Mutation p.Q455P 0.21 tolerated(0.05) benign(0.243) TCGA-CA-6717-01 14 70237195 70237195 T G SRSF5 Missense_Mutation p.D126E 0.10 deleterious(0) probably_damaging(0.951) TCGA-CA-6717-01 14 70714056 70714056 C A ADAM21P1 RNA 0.16 TCGA-CA-6717-01 14 70989957 70989957 C A ADAM20 Missense_Mutation p.K556N 0.08 deleterious(0.02) benign(0.098) TCGA-CA-6717-01 14 71555968 71555968 C A PCNX Missense_Mutation p.S1833Y 0.27 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 72117082 72117082 T C SIPA1L1 Missense_Mutation p.Y617H 0.16 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 14 72939618 72939618 T G RGS6 Missense_Mutation p.L192W 0.17 deleterious(0) possibly_damaging(0.894) TCGA-CA-6717-01 14 73459931 73459931 G A ZFYVE1 Missense_Mutation p.R375W 0.30 tolerated(0.14) benign(0.009) TCGA-CA-6717-01 14 73730934 73730934 C T PAPLN Silent p.F932F 0.16 TCGA-CA-6717-01 14 73976091 73976091 C T HEATR4 Missense_Mutation p.A549T 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 74036077 74036077 C A ACOT2 Missense_Mutation p.L45M 0.23 tolerated(0.22) benign(0.258) TCGA-CA-6717-01 14 74061877 74061877 A C ACOT4 Missense_Mutation p.N262T 0.15 tolerated(0.39) benign(0.046) TCGA-CA-6717-01 14 74180279 74180279 A G PNMA1 Silent p.L22L 0.24 TCGA-CA-6717-01 14 74413028 74413028 T C FAM161B Missense_Mutation p.D175G 0.35 tolerated(1) benign(0.001) TCGA-CA-6717-01 14 74567882 74567882 A G LIN52 Missense_Mutation p.N79S 0.14 tolerated(0.32) benign(0.219) TCGA-CA-6717-01 14 74824933 74824933 G A VRTN Missense_Mutation p.A483T 0.26 tolerated(0.66) benign(0.003) TCGA-CA-6717-01 14 74969607 74969607 C T LTBP2 Missense_Mutation p.R1640H 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-CA-6717-01 14 74975613 74975613 C T LTBP2 Missense_Mutation p.G1149D 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 75139800 75139800 C T AREL1 Missense_Mutation p.R427H 0.10 tolerated(0.52) possibly_damaging(0.719) TCGA-CA-6717-01 14 75248161 75248161 A C YLPM1 Missense_Mutation p.K472T 0.20 unknown(0) TCGA-CA-6717-01 14 75264393 75264393 A G YLPM1 Missense_Mutation p.E798G 0.11 probably_damaging(0.986) TCGA-CA-6717-01 14 75330378 75330378 C T PROX2 Missense_Mutation p.E54K 0.11 deleterious(0.01) benign(0.114) TCGA-CA-6717-01 14 75513315 75513315 T C MLH3 Missense_Mutation p.D1015G 0.14 tolerated(0.06) benign(0.003) TCGA-CA-6717-01 14 75513429 75513429 G T MLH3 Missense_Mutation p.S977Y 0.23 deleterious(0.04) benign(0.01) TCGA-CA-6717-01 14 75513435 75513435 T G MLH3 Missense_Mutation p.N975T 0.11 tolerated(0.09) benign(0.008) TCGA-CA-6717-01 14 75553773 75553773 T C NEK9 Missense_Mutation p.Q922R 0.09 tolerated_low_confidence(1) benign(0) TCGA-CA-6717-01 14 75935995 75935995 A G JDP2 Silent p.E114E 0.13 TCGA-CA-6717-01 14 76230963 76230963 C T TTLL5 Missense_Mutation p.T519I 0.08 tolerated(0.19) benign(0.001) TCGA-CA-6717-01 14 76249777 76249777 C T TTLL5 Nonsense_Mutation p.R964* 0.15 TCGA-CA-6717-01 14 76948426 76948426 C T ESRRB Silent p.S194S 0.16 TCGA-CA-6717-01 14 77274308 77274308 C T ANGEL1 Missense_Mutation p.R278H 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 14 77304271 77304271 C A C14orf166B Missense_Mutation p.F184L 0.22 tolerated(0.59) benign(0.028) TCGA-CA-6717-01 14 77319687 77319687 C T C14orf166B Silent p.I314I 0.11 TCGA-CA-6717-01 14 77327050 77327050 C T C14orf166B Silent p.S373S 0.14 TCGA-CA-6717-01 14 77715120 77715120 T C TMEM63C Missense_Mutation p.I592T 0.12 deleterious(0.03) benign(0.005) TCGA-CA-6717-01 14 77751902 77751902 A G POMT2 Missense_Mutation p.V469A 0.17 tolerated(0.18) benign(0.241) TCGA-CA-6717-01 14 77808177 77808177 G A TMED8 Silent p.F305F 0.08 TCGA-CA-6717-01 14 77872476 77872476 C T NOXRED1 Missense_Mutation p.G229R 0.12 tolerated(0.24) probably_damaging(0.999) TCGA-CA-6717-01 14 81244358 81244358 T G CEP128 Missense_Mutation p.K748N 0.14 tolerated(0.05) benign(0.028) TCGA-CA-6717-01 14 81609436 81609436 A C TSHR Missense_Mutation p.D345A 0.11 tolerated(0.09) benign(0.341) TCGA-CA-6717-01 14 81670439 81670439 T G GTF2A1 Missense_Mutation p.N48H 0.10 deleterious(0) benign(0.445) TCGA-CA-6717-01 14 81743918 81743918 G T STON2 Missense_Mutation p.F579L 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-CA-6717-01 14 81994072 81994072 G T SEL1L Silent p.G27G 0.18 TCGA-CA-6717-01 14 86091432 86091432 C A FLRT2 3'UTR 0.11 TCGA-CA-6717-01 14 86092167 86092167 C A FLRT2 3'UTR 0.23 TCGA-CA-6717-01 14 86092231 86092231 C A FLRT2 3'UTR 0.24 TCGA-CA-6717-01 14 86092394 86092394 C A FLRT2 3'UTR 0.11 TCGA-CA-6717-01 14 86092636 86092636 C A FLRT2 3'UTR 0.08 TCGA-CA-6717-01 14 88442762 88442762 T C GALC Missense_Mutation p.E231G 0.13 tolerated(0.05) benign(0.231) TCGA-CA-6717-01 14 88477865 88477865 T A GPR65 Missense_Mutation p.I225K 0.12 tolerated(1) benign(0.012) TCGA-CA-6717-01 14 88789164 88789164 A G KCNK10 5'UTR 0.09 TCGA-CA-6717-01 14 88892662 88892662 T G SPATA7 Silent p.S153S 0.23 TCGA-CA-6717-01 14 88935311 88935311 A C PTPN21 Silent p.T1115T 0.20 TCGA-CA-6717-01 14 88940116 88940116 T G PTPN21 Missense_Mutation p.K848Q 0.14 tolerated(0.08) probably_damaging(0.987) TCGA-CA-6717-01 14 88946646 88946646 T G PTPN21 Missense_Mutation p.S377R 0.22 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 14 89085018 89085018 G T EML5 Missense_Mutation p.F1838L 0.21 tolerated(0.08) possibly_damaging(0.495) TCGA-CA-6717-01 14 89305829 89305829 G T TTC8 Nonsense_Mutation p.E60* 0.08 TCGA-CA-6717-01 14 89338006 89338006 C A TTC8 Missense_Mutation p.S388Y 0.20 tolerated(0.7) possibly_damaging(0.628) TCGA-CA-6717-01 14 89628946 89628946 T C FOXN3 Missense_Mutation p.K429E 0.09 tolerated(0.27) benign(0.044) TCGA-CA-6717-01 14 90650495 90650495 C A KCNK13 Silent p.I125I 0.11 TCGA-CA-6717-01 14 90731474 90731474 C T PSMC1 Missense_Mutation p.P219S 0.16 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 14 91007800 91007800 G A TTC7B Missense_Mutation p.A815V 0.10 tolerated(0.16) benign(0.059) TCGA-CA-6717-01 14 91077183 91077183 A G TTC7B Silent p.S623S 0.16 TCGA-CA-6717-01 14 91110426 91110426 C T TTC7B Missense_Mutation p.D573N 0.18 tolerated(1) possibly_damaging(0.815) TCGA-CA-6717-01 14 91247235 91247235 C A TTC7B Nonsense_Mutation p.E98* 0.13 TCGA-CA-6717-01 14 91413808 91413808 T C RPS6KA5 Missense_Mutation p.I161V 0.11 tolerated(0.09) benign(0.129) TCGA-CA-6717-01 14 91655456 91655456 C T C14orf159 Silent p.I379I 0.17 TCGA-CA-6717-01 14 91776319 91776319 G A CCDC88C Silent p.L916L 0.11 TCGA-CA-6717-01 14 91928409 91928409 G T SMEK1 Missense_Mutation p.F703L 0.08 tolerated(0.13) probably_damaging(0.943) TCGA-CA-6717-01 14 92105583 92105583 A C CATSPERB Missense_Mutation p.Y482D 0.13 deleterious(0) possibly_damaging(0.714) TCGA-CA-6717-01 14 92251540 92251540 C T TC2N Missense_Mutation p.R443Q 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-CA-6717-01 14 92258834 92258834 T C TC2N Silent p.V308V 0.10 TCGA-CA-6717-01 14 92280125 92280125 T G TC2N 5'UTR 0.11 TCGA-CA-6717-01 14 92280171 92280171 T C TC2N Splice_Site 0.19 TCGA-CA-6717-01 14 92357618 92357618 G T FBLN5 Missense_Mutation p.S189Y 0.30 tolerated(1) probably_damaging(0.989) TCGA-CA-6717-01 14 92471238 92471238 G A TRIP11 Nonsense_Mutation p.R1028* 0.14 TCGA-CA-6717-01 14 92471730 92471730 G T TRIP11 Missense_Mutation p.H864N 0.19 deleterious(0) probably_damaging(0.94) TCGA-CA-6717-01 14 92471874 92471874 A C TRIP11 Missense_Mutation p.F816V 0.11 deleterious(0.05) benign(0.234) TCGA-CA-6717-01 14 92480777 92480777 G T TRIP11 Missense_Mutation p.S323Y 0.19 deleterious(0) benign(0.019) TCGA-CA-6717-01 14 93142874 93142874 G A RIN3 Missense_Mutation p.R797H 0.26 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 14 93404708 93404708 G T ITPK1 3'UTR 0.26 TCGA-CA-6717-01 14 93652955 93652955 G A TMEM251 Missense_Mutation p.R150H 0.18 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CA-6717-01 14 93653041 93653041 G A TMEM251 3'UTR 0.18 TCGA-CA-6717-01 14 93963559 93963559 A C UNC79 Missense_Mutation p.Q98H 0.09 tolerated(0.23) probably_damaging(0.997) TCGA-CA-6717-01 14 94088509 94088509 G A UNC79 Missense_Mutation p.E1467K 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6717-01 14 94125549 94125549 A C UNC79 Missense_Mutation p.D2018A 0.08 tolerated(0.05) probably_damaging(0.98) TCGA-CA-6717-01 14 94521481 94521481 C T DDX24 Missense_Mutation p.R680Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 14 94545624 94545624 C A DDX24 Missense_Mutation p.K155N 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6717-01 14 94582839 94582839 C T IFI27 Missense_Mutation p.A112V 0.20 tolerated(0.13) benign(0.003) TCGA-CA-6717-01 14 94642400 94642400 G T PPP4R4 Nonsense_Mutation p.E43* 0.15 TCGA-CA-6717-01 14 94693654 94693654 G T PPP4R4 Intron 0.08 TCGA-CA-6717-01 14 94699989 94699989 G T PPP4R4 Splice_Site p.X173_splice 0.18 TCGA-CA-6717-01 14 94750438 94750438 C T SERPINA10 Missense_Mutation p.G400E 0.16 deleterious(0.03) possibly_damaging(0.614) TCGA-CA-6717-01 14 94844707 94844707 G A SERPINA1 3'UTR 0.18 TCGA-CA-6717-01 14 94953641 94953641 T C SERPINA12 Silent p.%3D 0.17 TCGA-CA-6717-01 14 95056569 95056569 A G SERPINA5 Missense_Mutation p.S271G 0.12 tolerated(0.29) benign(0.001) TCGA-CA-6717-01 14 95234768 95234768 C T GSC 3'UTR 0.19 TCGA-CA-6717-01 14 95562256 95562256 T G DICER1 Missense_Mutation p.E1667D 0.11 tolerated(0.57) benign(0) TCGA-CA-6717-01 14 95572534 95572534 C T DICER1 Missense_Mutation p.R944Q 0.28 tolerated(0.31) probably_damaging(0.993) TCGA-CA-6717-01 14 95599662 95599662 C T DICER1 Missense_Mutation p.R45K 0.17 tolerated(0.06) probably_damaging(0.996) TCGA-CA-6717-01 14 95923598 95923598 C T SYNE3 Nonsense_Mutation p.W235* 0.17 TCGA-CA-6717-01 14 96707261 96707261 A C BDKRB2 Missense_Mutation p.K199T 0.09 tolerated(0.27) benign(0.011) TCGA-CA-6717-01 14 96730546 96730546 G A BDKRB1 Missense_Mutation p.R176Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 14 96769448 96769448 A C ATG2B Missense_Mutation p.L1663V 0.14 deleterious(0) probably_damaging(0.967) TCGA-CA-6717-01 14 96783538 96783538 G T ATG2B Missense_Mutation p.L1052I 0.28 deleterious(0.03) benign(0.444) TCGA-CA-6717-01 14 96784189 96784189 G T ATG2B Silent p.I961I 0.08 TCGA-CA-6717-01 14 96795891 96795891 A C ATG2B Missense_Mutation p.I604S 0.08 deleterious(0) benign(0.092) TCGA-CA-6717-01 14 96937842 96937842 G T AK7 Missense_Mutation p.R462I 0.11 deleterious(0) possibly_damaging(0.883) TCGA-CA-6717-01 14 96993811 96993811 C T PAPOLA Nonsense_Mutation p.R126* 0.17 TCGA-CA-6717-01 15 100185780 100185780 G T MEF2A Missense_Mutation p.K23N 0.12 deleterious(0) possibly_damaging(0.888) TCGA-CA-6717-01 15 100185860 100185860 G T MEF2A Missense_Mutation p.S50I 0.19 deleterious(0.04) possibly_damaging(0.887) TCGA-CA-6717-01 15 100591855 100591855 C T ADAMTS17 Missense_Mutation p.E793K 0.16 deleterious(0.03) possibly_damaging(0.689) TCGA-CA-6717-01 15 101110087 101110087 T A LINS Missense_Mutation p.N544Y 0.11 tolerated(1) benign(0.002) TCGA-CA-6717-01 15 101550769 101550769 C T LRRK1 Silent p.F368F 0.12 TCGA-CA-6717-01 15 101717860 101717860 T G CHSY1 Missense_Mutation p.Q714H 0.17 deleterious(0.04) possibly_damaging(0.897) TCGA-CA-6717-01 15 101718353 101718353 A C CHSY1 Missense_Mutation p.F550C 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 15 101718375 101718375 G A CHSY1 Missense_Mutation p.R543C 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 15 20169953 20169953 A G IGHV1OR15-9 Missense_Mutation p.S107P 0.17 tolerated(0.15) benign(0.014) TCGA-CA-6717-01 15 20489485 20489485 C A CHEK2P2 RNA 0.05 TCGA-CA-6717-01 15 22368845 22368845 G T OR4M2 Missense_Mutation p.K90N 0.09 deleterious(0.01) probably_damaging(0.959) TCGA-CA-6717-01 15 22369288 22369288 C T OR4M2 Missense_Mutation p.A238V 0.11 tolerated(0.07) benign(0.217) TCGA-CA-6717-01 15 22863095 22863095 C A TUBGCP5 Missense_Mutation p.L706I 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 15 22933766 22933766 G A CYFIP1 Missense_Mutation p.E229K 0.10 tolerated(0.2) benign(0.425) TCGA-CA-6717-01 15 23310029 23310029 G A HERC2P2 RNA 0.06 TCGA-CA-6717-01 15 23811313 23811313 T C MKRN3 Silent p.T128T 0.22 TCGA-CA-6717-01 15 23812698 23812698 C T MKRN3 3'UTR 0.10 TCGA-CA-6717-01 15 23812896 23812896 C T MKRN3 3'UTR 0.18 TCGA-CA-6717-01 15 23890103 23890103 C A MAGEL2 Missense_Mutation p.Q326H 0.16 tolerated(0.12) benign(0.014) TCGA-CA-6717-01 15 23931648 23931648 G A NDN Silent p.F239F 0.17 TCGA-CA-6717-01 15 24924652 24924652 C T NPAP1 3'UTR 0.12 TCGA-CA-6717-01 15 24926730 24926730 C A NPAP1 3'UTR 0.17 TCGA-CA-6717-01 15 24927749 24927749 G T NPAP1 3'UTR 0.18 TCGA-CA-6717-01 15 25222995 25222995 C T SNRPN Missense_Mutation p.A164V 0.19 tolerated(0.09) probably_damaging(0.935) TCGA-CA-6717-01 15 25223408 25223408 G T SNRPN Missense_Mutation p.G210W 0.17 deleterious(0) unknown(0) TCGA-CA-6717-01 15 25969153 25969153 A G ATP10A Missense_Mutation p.I332T 0.11 tolerated(0.28) benign(0.002) TCGA-CA-6717-01 15 26812789 26812789 C T GABRB3 Silent p.T258T 0.18 TCGA-CA-6717-01 15 28211897 28211897 C T OCA2 Silent p.P525P 0.17 TCGA-CA-6717-01 15 28359950 28359950 T G HERC2 Splice_Site p.X4575_splice 0.10 TCGA-CA-6717-01 15 28456229 28456229 G A HERC2 Missense_Mutation p.R2330W 0.10 possibly_damaging(0.784) TCGA-CA-6717-01 15 28519528 28519528 C T HERC2 Missense_Mutation p.E237K 0.21 probably_damaging(0.986) TCGA-CA-6717-01 15 28999627 28999627 G T WHAMMP2 RNA 0.16 TCGA-CA-6717-01 15 28999660 28999660 G T WHAMMP2 RNA 0.17 TCGA-CA-6717-01 15 29346774 29346774 C T APBA2 Silent p.I229I 0.12 TCGA-CA-6717-01 15 30010601 30010601 T C TJP1 Missense_Mutation p.T1249A 0.11 tolerated_low_confidence(1) benign(0) TCGA-CA-6717-01 15 30058489 30058489 A G TJP1 Missense_Mutation p.V190A 0.26 deleterious(0.01) possibly_damaging(0.579) TCGA-CA-6717-01 15 30927752 30927752 G A ARHGAP11B Silent p.V241V 0.10 TCGA-CA-6717-01 15 31214475 31214475 G T FAN1 Missense_Mutation p.R697I 0.08 deleterious(0.04) benign(0.035) TCGA-CA-6717-01 15 31240581 31240581 A G MTMR10 Missense_Mutation p.L434P 0.19 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 15 31294039 31294039 C A TRPM1 Nonsense_Mutation p.E1639* 0.15 TCGA-CA-6717-01 15 31294277 31294277 G A TRPM1 Silent p.R1559R 0.12 TCGA-CA-6717-01 15 31358339 31358339 C T TRPM1 Missense_Mutation p.A261T 0.12 tolerated(0.15) benign(0.216) TCGA-CA-6717-01 15 31369122 31369122 C T TRPM1 Missense_Mutation p.M40I 0.19 deleterious(0) benign(0.001) TCGA-CA-6717-01 15 32449835 32449835 G A CHRNA7 Missense_Mutation p.D182N 0.22 tolerated(0.08) probably_damaging(0.931) TCGA-CA-6717-01 15 32455437 32455437 C T CHRNA7 Silent p.F326F 0.17 TCGA-CA-6717-01 15 32929123 32929123 T G ARHGAP11A Missense_Mutation p.F717V 0.09 tolerated(0.45) benign(0.004) TCGA-CA-6717-01 15 33024318 33024318 A G GREM1 3'UTR 0.10 TCGA-CA-6717-01 15 33025612 33025612 A G GREM1 3'UTR 0.10 TCGA-CA-6717-01 15 33025685 33025685 G C GREM1 3'UTR 0.11 TCGA-CA-6717-01 15 33025939 33025939 G T GREM1 3'UTR 0.10 TCGA-CA-6717-01 15 33026197 33026197 A C GREM1 3'UTR 0.11 TCGA-CA-6717-01 15 33026797 33026797 A C GREM1 3'UTR 0.16 TCGA-CA-6717-01 15 33831599 33831599 A G RYR3 Missense_Mutation p.E161G 0.10 probably_damaging(0.999) TCGA-CA-6717-01 15 33833085 33833085 G A RYR3 Missense_Mutation p.E214K 0.19 benign(0.023) TCGA-CA-6717-01 15 33855049 33855049 G T RYR3 Missense_Mutation p.E328D 0.15 probably_damaging(0.976) TCGA-CA-6717-01 15 33920748 33920748 A C RYR3 Missense_Mutation p.K884T 0.09 probably_damaging(0.993) TCGA-CA-6717-01 15 33922198 33922198 G T RYR3 Nonsense_Mutation p.E913* 0.25 TCGA-CA-6717-01 15 33923493 33923493 A C RYR3 Missense_Mutation p.N956H 0.13 possibly_damaging(0.73) TCGA-CA-6717-01 15 33936554 33936554 G A RYR3 Missense_Mutation p.R1200H 0.22 probably_damaging(1) TCGA-CA-6717-01 15 33955041 33955041 A C RYR3 Missense_Mutation p.E1770D 0.15 benign(0.001) TCGA-CA-6717-01 15 33988507 33988507 C A RYR3 Missense_Mutation p.F1983L 0.19 benign(0.405) TCGA-CA-6717-01 15 34034567 34034567 T C RYR3 Silent p.N2607N 0.09 TCGA-CA-6717-01 15 34092991 34092991 C A RYR3 Missense_Mutation p.P3284H 0.14 probably_damaging(0.947) TCGA-CA-6717-01 15 34105190 34105190 G A RYR3 Missense_Mutation p.E3462K 0.29 benign(0.035) TCGA-CA-6717-01 15 34113779 34113779 C T RYR3 Silent p.N3657N 0.18 TCGA-CA-6717-01 15 34355953 34355953 T G CHRM5 Silent p.T345T 0.22 TCGA-CA-6717-01 15 34356842 34356843 - T CHRM5 3'UTR 0.16 TCGA-CA-6717-01 15 34393815 34393815 C T EMC7 Missense_Mutation p.G76S 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-CA-6717-01 15 34395548 34395548 A G PGBD4 Silent p.R272R 0.14 TCGA-CA-6717-01 15 34396051 34396051 C A PGBD4 Missense_Mutation p.S440Y 0.13 tolerated(1) benign(0.191) TCGA-CA-6717-01 15 34434418 34434418 A C KATNBL1 3'UTR 0.26 TCGA-CA-6717-01 15 34522053 34522053 A G EMC4 3'UTR 0.10 TCGA-CA-6717-01 15 34634236 34634236 C A NOP10 Missense_Mutation p.R43L 0.16 deleterious(0) possibly_damaging(0.885) TCGA-CA-6717-01 15 34640214 34640214 G A NUTM1 Missense_Mutation p.A21T 0.19 tolerated(0.35) benign(0.026) TCGA-CA-6717-01 15 34640500 34640500 C T NUTM1 Missense_Mutation p.S116L 0.22 tolerated(0.06) benign(0.021) TCGA-CA-6717-01 15 35083348 35083348 G T ACTC1 Silent p.I319I 0.21 TCGA-CA-6717-01 15 35085711 35085711 C A ACTC1 Missense_Mutation p.K63N 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.894) TCGA-CA-6717-01 15 35212574 35212574 C A AQR Nonsense_Mutation p.E394* 0.24 TCGA-CA-6717-01 15 35233185 35233185 C A AQR Nonsense_Mutation p.E186* 0.14 TCGA-CA-6717-01 15 35234265 35234265 C T AQR Missense_Mutation p.R163Q 0.24 deleterious(0) possibly_damaging(0.89) TCGA-CA-6717-01 15 35273651 35273651 A G ZNF770 Missense_Mutation p.F662S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 35274579 35274579 T G ZNF770 Missense_Mutation p.N353H 0.11 tolerated(0.67) possibly_damaging(0.572) TCGA-CA-6717-01 15 35274946 35274946 T C ZNF770 Silent p.K230K 0.12 TCGA-CA-6717-01 15 35275669 35275669 C A ZNF770 5'UTR 0.08 TCGA-CA-6717-01 15 35742960 35742960 C T DPH6 Missense_Mutation p.R144K 0.13 tolerated(0.06) benign(0.074) TCGA-CA-6717-01 15 37390430 37390430 G A MEIS2 Intron 0.38 TCGA-CA-6717-01 15 38230399 38230399 G A TMCO5A Missense_Mutation p.S119N 0.09 tolerated(0.43) benign(0.108) TCGA-CA-6717-01 15 38591594 38591594 G A SPRED1 Missense_Mutation p.R18Q 0.10 deleterious(0.01) probably_damaging(0.948) TCGA-CA-6717-01 15 39545053 39545053 C A C15orf54 3'UTR 0.21 TCGA-CA-6717-01 15 39884980 39884980 A G THBS1 Missense_Mutation p.N915S 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 39910059 39910059 T C FSIP1 Missense_Mutation p.T526A 0.13 tolerated(0.72) benign(0.115) TCGA-CA-6717-01 15 40057930 40057930 C A FSIP1 Nonsense_Mutation p.E110* 0.10 TCGA-CA-6717-01 15 40212178 40212178 T C GPR176 Missense_Mutation p.N17S 0.12 tolerated(0.15) possibly_damaging(0.555) TCGA-CA-6717-01 15 40295502 40295502 C A EIF2AK4 Missense_Mutation p.P1115H 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 15 40581114 40581114 C T PLCB2 Silent p.Q1120Q 0.19 TCGA-CA-6717-01 15 40913815 40913815 T C CASC5 Silent p.N477N 0.11 TCGA-CA-6717-01 15 40914457 40914457 G T CASC5 Missense_Mutation p.E691D 0.16 tolerated(1) benign(0.003) TCGA-CA-6717-01 15 40914933 40914933 T G CASC5 Missense_Mutation p.I850S 0.13 tolerated(0.66) benign(0.004) TCGA-CA-6717-01 15 40917014 40917014 A G CASC5 Missense_Mutation p.T1544A 0.14 tolerated(0.13) benign(0.044) TCGA-CA-6717-01 15 40917418 40917418 C A CASC5 Silent p.I1678I 0.25 TCGA-CA-6717-01 15 41246453 41246453 G T CHAC1 Missense_Mutation p.D129Y 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-CA-6717-01 15 41988503 41988503 A C MGA Missense_Mutation p.K432T 0.10 tolerated(0.1) possibly_damaging(0.517) TCGA-CA-6717-01 15 41988692 41988692 G A MGA Missense_Mutation p.R495Q 0.09 deleterious(0.04) benign(0.02) TCGA-CA-6717-01 15 41989134 41989134 A G MGA Silent p.T642T 0.13 TCGA-CA-6717-01 15 42058857 42058857 T G MGA Silent p.A2859A 0.10 TCGA-CA-6717-01 15 42138980 42138980 C T PLA2G4B Missense_Mutation p.R863W 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 42140672 42140672 C A SPTBN5 3'UTR 0.10 TCGA-CA-6717-01 15 42172472 42172472 G A SPTBN5 Silent p.F899F 0.17 TCGA-CA-6717-01 15 42285018 42285018 G T PLA2G4E Missense_Mutation p.L463I 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 15 42360903 42360903 C T PLA2G4D 3'UTR 0.16 TCGA-CA-6717-01 15 42564285 42564285 T G TMEM87A Silent p.R61R 0.22 TCGA-CA-6717-01 15 42749405 42749405 G A ZNF106 5'UTR 0.15 TCGA-CA-6717-01 15 42850427 42850427 C A HAUS2 Missense_Mutation p.S42Y 0.10 deleterious(0) possibly_damaging(0.672) TCGA-CA-6717-01 15 43023247 43023247 A C CDAN1 Missense_Mutation p.V628G 0.24 deleterious(0.03) benign(0.124) TCGA-CA-6717-01 15 43045172 43045172 C A TTBK2 Nonsense_Mutation p.E758* 0.23 TCGA-CA-6717-01 15 43045355 43045355 G A TTBK2 Missense_Mutation p.P697S 0.09 tolerated_low_confidence(0.22) benign(0.009) TCGA-CA-6717-01 15 43250280 43250280 C A UBR1 Missense_Mutation p.R1589I 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-CA-6717-01 15 43426543 43426543 A G TMEM62 Missense_Mutation p.Q90R 0.21 tolerated(0.15) benign(0.011) TCGA-CA-6717-01 15 43484994 43484994 G A CCNDBP1 Missense_Mutation p.R305Q 0.18 deleterious(0.04) benign(0.293) TCGA-CA-6717-01 15 43508522 43508522 G A EPB42 Missense_Mutation p.A77V 0.13 tolerated(0.09) benign(0.026) TCGA-CA-6717-01 15 43579564 43579564 A G TGM7 Missense_Mutation p.V260A 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 43653555 43653555 C A ZSCAN29 Nonsense_Mutation p.E759* 0.32 TCGA-CA-6717-01 15 43724833 43724833 C A TP53BP1 Missense_Mutation p.E1078D 0.34 tolerated(0.14) benign(0.007) TCGA-CA-6717-01 15 43748394 43748394 C A TP53BP1 Missense_Mutation p.E804D 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.622) TCGA-CA-6717-01 15 43748582 43748582 C A TP53BP1 Nonsense_Mutation p.E742* 0.20 TCGA-CA-6717-01 15 43748803 43748803 T C TP53BP1 Missense_Mutation p.E668G 0.16 deleterious(0) possibly_damaging(0.691) TCGA-CA-6717-01 15 43749363 43749363 T G TP53BP1 Missense_Mutation p.K481N 0.15 tolerated(0.1) benign(0.106) TCGA-CA-6717-01 15 43784496 43784496 C A TP53BP1 Nonsense_Mutation p.E60* 0.19 TCGA-CA-6717-01 15 43814519 43814519 T G MAP1A Missense_Mutation p.L283R 0.24 probably_damaging(0.998) TCGA-CA-6717-01 15 43940190 43940190 C T CATSPER2 Missense_Mutation p.D24N 0.23 tolerated(0.11) probably_damaging(0.926) TCGA-CA-6717-01 15 44028388 44028388 G A RNU6-354P 5'Flank 0.21 TCGA-CA-6717-01 15 44058121 44058121 A C PDIA3 Missense_Mutation p.K252N 0.10 tolerated(0.24) probably_damaging(0.954) TCGA-CA-6717-01 15 44060688 44060688 C T PDIA3 Missense_Mutation p.R344C 0.09 tolerated(0.1) probably_damaging(0.946) TCGA-CA-6717-01 15 44066880 44066880 T G ELL3 Missense_Mutation p.N246T 0.10 tolerated(0.17) benign(0.033) TCGA-CA-6717-01 15 44751268 44751268 G A CTDSPL2 Missense_Mutation p.R19H 0.10 tolerated_low_confidence(0.18) benign(0.025) TCGA-CA-6717-01 15 44855383 44855383 A C SPG11 Missense_Mutation p.I2423S 0.11 deleterious(0) benign(0.018) TCGA-CA-6717-01 15 44858062 44858062 C T SPG11 Missense_Mutation p.R2330Q 0.16 tolerated(0.05) benign(0) TCGA-CA-6717-01 15 44889053 44889053 C A SPG11 Nonsense_Mutation p.E1364* 0.27 TCGA-CA-6717-01 15 44941210 44941210 C A SPG11 Splice_Site p.X486_splice 0.11 TCGA-CA-6717-01 15 44943743 44943743 T G SPG11 Missense_Mutation p.K468Q 0.11 tolerated(0.35) possibly_damaging(0.794) TCGA-CA-6717-01 15 44949495 44949495 C A SPG11 Splice_Site p.X223_splice 0.13 TCGA-CA-6717-01 15 44958031 44958031 C A PATL2 3'UTR 0.30 TCGA-CA-6717-01 15 45007804 45007804 T G B2M Missense_Mutation p.L84R 0.16 tolerated(0.34) benign(0.14) TCGA-CA-6717-01 15 45008538 45008538 T C B2M Nonstop_Mutation p.*120Qext*48 0.16 TCGA-CA-6717-01 15 45047156 45047156 C A TRIM69 Nonsense_Mutation p.S22* 0.25 TCGA-CA-6717-01 15 45408024 45408024 C A DUOXA2 Missense_Mutation p.L59I 0.10 tolerated(0.22) benign(0.19) TCGA-CA-6717-01 15 45470440 45470440 C T SHF Missense_Mutation p.G123E 0.24 deleterious(0.04) possibly_damaging(0.782) TCGA-CA-6717-01 15 45557801 45557801 C A SLC28A2 Missense_Mutation p.F267L 0.08 deleterious(0) possibly_damaging(0.672) TCGA-CA-6717-01 15 45564871 45564871 G A SLC28A2 Missense_Mutation p.G583E 0.22 deleterious(0.01) possibly_damaging(0.585) TCGA-CA-6717-01 15 45709475 45709475 G T SPATA5L1 Nonsense_Mutation p.E616* 0.13 TCGA-CA-6717-01 15 48056866 48056866 G A SEMA6D Missense_Mutation p.E377K 0.11 tolerated(0.1) possibly_damaging(0.768) TCGA-CA-6717-01 15 48058096 48058096 G T SEMA6D Missense_Mutation p.K486N 0.09 deleterious(0) benign(0.121) TCGA-CA-6717-01 15 48063044 48063044 C T SEMA6D Nonsense_Mutation p.R762* 0.13 TCGA-CA-6717-01 15 48063466 48063466 G A SEMA6D Missense_Mutation p.M902I 0.11 tolerated(0.2) benign(0.002) TCGA-CA-6717-01 15 48431198 48431198 G T SLC24A5 Missense_Mutation p.D302Y 0.14 deleterious(0.01) benign(0.223) TCGA-CA-6717-01 15 48434526 48434526 A C SLC24A5 Missense_Mutation p.K494T 0.09 tolerated(0.26) benign(0.063) TCGA-CA-6717-01 15 48441371 48441371 A C MYEF2 Missense_Mutation p.F526V 0.17 deleterious(0.05) possibly_damaging(0.519) TCGA-CA-6717-01 15 48460937 48460937 C A MYEF2 Missense_Mutation p.K87N 0.16 deleterious(0.02) possibly_damaging(0.87) TCGA-CA-6717-01 15 48495627 48495627 G T CTXN2 3'UTR 0.22 TCGA-CA-6717-01 15 48495943 48495943 C A CTXN2 3'UTR 0.33 TCGA-CA-6717-01 15 48500262 48500262 C T SLC12A1 Missense_Mutation p.R116C 0.21 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 48519368 48519368 G T SLC12A1 Nonsense_Mutation p.G241* 0.21 TCGA-CA-6717-01 15 48521514 48521514 G T SLC12A1 Missense_Mutation p.D285Y 0.07 deleterious(0) probably_damaging(0.953) TCGA-CA-6717-01 15 48559885 48559885 G A SLC12A1 Missense_Mutation p.R761Q 0.23 tolerated(1) benign(0.029) TCGA-CA-6717-01 15 48634269 48634269 G T DUT Missense_Mutation p.K251N 0.20 tolerated(0.05) benign(0.007) TCGA-CA-6717-01 15 48788295 48788295 A G FBN1 Splice_Site p.X807_splice 0.17 TCGA-CA-6717-01 15 49073544 49073544 C A CEP152 Nonsense_Mutation p.E476* 0.11 TCGA-CA-6717-01 15 49309166 49309166 G T SECISBP2L Missense_Mutation p.P433Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 49620303 49620303 A C GALK2 Missense_Mutation p.S442R 0.10 tolerated(0.13) benign(0.259) TCGA-CA-6717-01 15 49860534 49860534 C A FAM227B Nonsense_Mutation p.E219* 0.19 TCGA-CA-6717-01 15 49882112 49882112 A C FAM227B Missense_Mutation p.I66M 0.10 deleterious(0) probably_damaging(0.962) TCGA-CA-6717-01 15 49917503 49917503 C A DTWD1 Missense_Mutation p.L47I 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 50189510 50189510 G T ATP8B4 Missense_Mutation p.F892L 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-CA-6717-01 15 50303062 50303062 C T ATP8B4 Missense_Mutation p.E139K 0.10 tolerated(0.31) possibly_damaging(0.897) TCGA-CA-6717-01 15 50399151 50399151 C T ATP8B4 Missense_Mutation p.E5K 0.12 tolerated(0.82) benign(0) TCGA-CA-6717-01 15 50593548 50593548 T C GABPB1 Silent p.Q163Q 0.21 TCGA-CA-6717-01 15 50773789 50773789 C T USP8 Missense_Mutation p.R444C 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6717-01 15 50903450 50903450 T G TRPM7 Missense_Mutation p.K707T 0.23 deleterious(0.04) possibly_damaging(0.792) TCGA-CA-6717-01 15 50935620 50935620 C T TRPM7 Missense_Mutation p.R151Q 0.18 deleterious(0) possibly_damaging(0.877) TCGA-CA-6717-01 15 51207763 51207763 G T AP4E1 Missense_Mutation p.R114I 0.10 deleterious(0) possibly_damaging(0.903) TCGA-CA-6717-01 15 51221265 51221265 A G AP4E1 Missense_Mutation p.N201S 0.14 tolerated(0.32) benign(0.032) TCGA-CA-6717-01 15 51503251 51503251 A G CYP19A1 Silent p.V422V 0.22 TCGA-CA-6717-01 15 51741169 51741169 A C DMXL2 3'UTR 0.09 TCGA-CA-6717-01 15 51766615 51766615 C T DMXL2 Missense_Mutation p.R2380Q 0.17 tolerated(0.16) benign(0.016) TCGA-CA-6717-01 15 51787238 51787238 A G DMXL2 Missense_Mutation p.V1589A 0.10 tolerated(1) benign(0.004) TCGA-CA-6717-01 15 51790932 51790932 T G DMXL2 Missense_Mutation p.N1497H 0.10 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 15 51791271 51791271 C A DMXL2 Missense_Mutation p.D1384Y 0.09 deleterious(0.04) probably_damaging(1) TCGA-CA-6717-01 15 51809275 51809275 T G DMXL2 Missense_Mutation p.Q842H 0.10 tolerated(0.24) possibly_damaging(0.885) TCGA-CA-6717-01 15 51828437 51828437 C T DMXL2 Missense_Mutation p.R747Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 51828909 51828909 G A DMXL2 Missense_Mutation p.H590Y 0.27 tolerated(0.36) benign(0.115) TCGA-CA-6717-01 15 51860704 51860704 T G DMXL2 Missense_Mutation p.N89H 0.08 tolerated(0.13) probably_damaging(0.978) TCGA-CA-6717-01 15 51974717 51974717 A C SCG3 Missense_Mutation p.K29T 0.08 deleterious_low_confidence(0) benign(0.189) TCGA-CA-6717-01 15 51975309 51975309 A G SCG3 Missense_Mutation p.T57A 0.11 tolerated_low_confidence(0.57) benign(0.001) TCGA-CA-6717-01 15 51975489 51975489 A C SCG3 Missense_Mutation p.E85D 0.20 tolerated_low_confidence(0.22) benign(0.068) TCGA-CA-6717-01 15 51980524 51980524 C T SCG3 Silent p.I155I 0.12 TCGA-CA-6717-01 15 52100619 52100619 C T TMOD2 Missense_Mutation p.R342C 0.12 deleterious(0) possibly_damaging(0.866) TCGA-CA-6717-01 15 52258253 52258253 T G LEO1 Missense_Mutation p.Q169H 0.18 tolerated_low_confidence(0.24) possibly_damaging(0.45) TCGA-CA-6717-01 15 52258500 52258500 C A LEO1 Missense_Mutation p.R87I 0.11 deleterious_low_confidence(0.01) benign(0.282) TCGA-CA-6717-01 15 52350895 52350895 C T MAPK6 Missense_Mutation p.R256C 0.19 tolerated(0.14) benign(0.005) TCGA-CA-6717-01 15 52476749 52476749 A C GNB5 Missense_Mutation p.I42S 0.10 deleterious(0) benign(0.042) TCGA-CA-6717-01 15 52609273 52609273 G T MYO5A Missense_Mutation p.S1769Y 0.20 deleterious(0) possibly_damaging(0.905) TCGA-CA-6717-01 15 52668720 52668720 G T MYO5A Silent p.I748I 0.11 TCGA-CA-6717-01 15 52675317 52675317 G A MYO5A Silent p.I661I 0.11 TCGA-CA-6717-01 15 52688568 52688568 A C MYO5A Missense_Mutation p.F449C 0.12 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 15 52689443 52689443 G T MYO5A Missense_Mutation p.S425Y 0.24 tolerated(0.12) probably_damaging(0.954) TCGA-CA-6717-01 15 52892396 52892396 A G FAM214A Silent p.D859D 0.18 TCGA-CA-6717-01 15 52902391 52902391 A C FAM214A Missense_Mutation p.I240M 0.12 tolerated(0.15) benign(0.037) TCGA-CA-6717-01 15 53049698 53049698 A C ONECUT1 3'UTR 0.16 TCGA-CA-6717-01 15 53809827 53809827 T G WDR72 3'UTR 0.26 TCGA-CA-6717-01 15 53908282 53908282 G T WDR72 Missense_Mutation p.F707L 0.09 tolerated(0.58) benign(0.049) TCGA-CA-6717-01 15 54005025 54005025 G A WDR72 Nonsense_Mutation p.R219* 0.12 TCGA-CA-6717-01 15 54919089 54919089 C A UNC13C Nonsense_Mutation p.C2141* 0.11 TCGA-CA-6717-01 15 54919261 54919261 G T UNC13C Nonsense_Mutation p.E2199* 0.12 TCGA-CA-6717-01 15 55497904 55497904 C A RAB27A Splice_Site p.X156_splice 0.10 TCGA-CA-6717-01 15 55742535 55742535 T G DYX1C1 Missense_Mutation p.K223T 0.11 tolerated(0.11) benign(0.057) TCGA-CA-6717-01 15 55838943 55838943 G A PYGO1 Missense_Mutation p.P180S 0.11 tolerated(0.1) benign(0.048) TCGA-CA-6717-01 15 56032847 56032847 C A PRTG Nonsense_Mutation p.E44* 0.21 TCGA-CA-6717-01 15 56134294 56134294 C A NEDD4 Missense_Mutation p.R906I 0.23 tolerated(0.1) possibly_damaging(0.782) TCGA-CA-6717-01 15 56134342 56134342 A C NEDD4 Missense_Mutation p.F890C 0.18 tolerated(0.2) possibly_damaging(0.517) TCGA-CA-6717-01 15 56144726 56144726 A G NEDD4 Missense_Mutation p.S695P 0.18 tolerated(0.24) probably_damaging(0.992) TCGA-CA-6717-01 15 56395864 56395864 A G RFX7 Missense_Mutation p.Y136H 0.17 deleterious(0.03) probably_damaging(0.943) TCGA-CA-6717-01 15 56436604 56436604 C A RFX7 Missense_Mutation p.E91D 0.10 tolerated(0.62) benign(0.003) TCGA-CA-6717-01 15 56704528 56704528 A C TEX9 Missense_Mutation p.K286T 0.10 deleterious(0.03) benign(0.187) TCGA-CA-6717-01 15 56719818 56719818 G T TEX9 Nonsense_Mutation p.E327* 0.11 TCGA-CA-6717-01 15 57356019 57356019 A C TCF12 Silent p.R74R 0.11 TCGA-CA-6717-01 15 57730401 57730401 G A CGNL1 Silent p.S68S 0.12 TCGA-CA-6717-01 15 57744411 57744411 G A CGNL1 Missense_Mutation p.E660K 0.16 tolerated(0.56) benign(0) TCGA-CA-6717-01 15 57913848 57913848 G A MYZAP Missense_Mutation p.D121N 0.19 tolerated(0.07) benign(0.012) TCGA-CA-6717-01 15 58001399 58001399 A G POLR2M Missense_Mutation p.I201V 0.13 tolerated(0.17) benign(0.05) TCGA-CA-6717-01 15 58006991 58006991 A G POLR2M 3'UTR 0.16 TCGA-CA-6717-01 15 58302951 58302951 T C ALDH1A2 Missense_Mutation p.K130R 0.16 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 15 58830605 58830605 C A LIPC Silent p.L54L 0.17 TCGA-CA-6717-01 15 58889586 58889586 T G ADAM10 3'UTR 0.22 TCGA-CA-6717-01 15 58938351 58938351 C T ADAM10 Missense_Mutation p.R213H 0.09 deleterious(0) benign(0.356) TCGA-CA-6717-01 15 59185151 59185151 A G SLTM Silent p.L615L 0.10 TCGA-CA-6717-01 15 59350594 59350594 C T RNF111 Missense_Mutation p.S404L 0.09 tolerated_low_confidence(0.09) benign(0.208) TCGA-CA-6717-01 15 59386986 59386986 C A RNF111 Missense_Mutation p.L959I 0.22 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 15 59564585 59564585 C T MYO1E Missense_Mutation p.D23N 0.26 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 15 60803546 60803546 A G RORA Silent p.G266G 0.20 TCGA-CA-6717-01 15 62169233 62169233 C T VPS13C Missense_Mutation p.R3388Q 0.23 tolerated(0.27) benign(0.006) TCGA-CA-6717-01 15 62211516 62211516 T G VPS13C Missense_Mutation p.K2537T 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 62217686 62217686 A G VPS13C Missense_Mutation p.I2193T 0.29 deleterious(0.02) benign(0.269) TCGA-CA-6717-01 15 62233987 62233987 C T VPS13C Missense_Mutation p.E1810K 0.17 tolerated(0.93) benign(0.069) TCGA-CA-6717-01 15 62243173 62243173 C T VPS13C Missense_Mutation p.E1503K 0.15 tolerated(0.11) benign(0.251) TCGA-CA-6717-01 15 62246631 62246631 C A VPS13C Nonsense_Mutation p.E1430* 0.19 TCGA-CA-6717-01 15 63571521 63571521 A C APH1B Missense_Mutation p.K92T 0.10 deleterious(0.04) benign(0.352) TCGA-CA-6717-01 15 63824820 63824820 A C USP3 Intron 0.26 TCGA-CA-6717-01 15 64039989 64039989 G T HERC1 Missense_Mutation p.S763Y 0.29 probably_damaging(0.912) TCGA-CA-6717-01 15 64067138 64067138 G T HERC1 Missense_Mutation p.L229I 0.08 probably_damaging(0.975) TCGA-CA-6717-01 15 65041342 65041342 C T RBPMS2 Missense_Mutation p.R92H 0.24 deleterious(0) benign(0.418) TCGA-CA-6717-01 15 65226416 65226416 C T ANKDD1A Silent p.C283C 0.15 TCGA-CA-6717-01 15 65308777 65308777 A G MTFMT Silent p.N270N 0.20 TCGA-CA-6717-01 15 65345355 65345355 G C SLC51B Missense_Mutation p.L80F 0.23 tolerated(0.15) possibly_damaging(0.788) TCGA-CA-6717-01 15 65855134 65855134 A C PTPLAD1 Silent p.G148G 0.13 TCGA-CA-6717-01 15 65855202 65855202 G A PTPLAD1 Missense_Mutation p.R171Q 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 15 65868702 65868702 G T PTPLAD1 Missense_Mutation p.K358N 0.20 deleterious(0) unknown(0) TCGA-CA-6717-01 15 65917969 65917969 C A SLC24A1 Missense_Mutation p.F517L 0.18 possibly_damaging(0.787) TCGA-CA-6717-01 15 65918281 65918281 G A SLC24A1 Silent p.K621K 0.19 TCGA-CA-6717-01 15 65982804 65982804 C T DENND4A Silent p.E1375E 0.09 TCGA-CA-6717-01 15 66169787 66169787 T C RAB11A Missense_Mutation p.I53T 0.10 deleterious_low_confidence(0.02) benign(0.421) TCGA-CA-6717-01 15 66612971 66612971 T G DIS3L Missense_Mutation p.H409Q 0.13 deleterious(0) probably_damaging(0.97) TCGA-CA-6717-01 15 66625697 66625697 T C DIS3L 3'UTR 0.19 TCGA-CA-6717-01 15 66812934 66812934 A C ZWILCH Missense_Mutation p.K176T 0.17 deleterious(0.01) possibly_damaging(0.816) TCGA-CA-6717-01 15 66812938 66812938 T G ZWILCH Missense_Mutation p.N177K 0.10 tolerated(0.41) benign(0.01) TCGA-CA-6717-01 15 66824625 66824625 A G ZWILCH Missense_Mutation p.H399R 0.08 tolerated(0.83) benign(0.02) TCGA-CA-6717-01 15 67636448 67636448 A C IQCH Missense_Mutation p.I186L 0.17 tolerated(0.61) probably_damaging(0.993) TCGA-CA-6717-01 15 67677294 67677294 G T IQCH Nonsense_Mutation p.E465* 0.07 TCGA-CA-6717-01 15 67677309 67677309 T G IQCH Missense_Mutation p.F470V 0.09 deleterious(0.01) benign(0.234) TCGA-CA-6717-01 15 68118493 68118493 G T SKOR1 Missense_Mutation p.K295N 0.22 deleterious_low_confidence(0) possibly_damaging(0.547) TCGA-CA-6717-01 15 68599697 68599697 G T ITGA11 Missense_Mutation p.P1124T 0.20 tolerated(0.13) probably_damaging(0.964) TCGA-CA-6717-01 15 68612685 68612685 G A ITGA11 Silent p.S818S 0.31 TCGA-CA-6717-01 15 69011767 69011767 C A CORO2B Missense_Mutation p.S396Y 0.11 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 15 69320575 69320575 C A NOX5 Missense_Mutation p.F65L 0.20 tolerated(0.06) probably_damaging(0.934) TCGA-CA-6717-01 15 69561264 69561264 T G GLCE Missense_Mutation p.F512C 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 15 69729012 69729012 G A KIF23 Silent p.E502E 0.17 TCGA-CA-6717-01 15 70959503 70959503 C A UACA Nonsense_Mutation p.E1174* 0.20 TCGA-CA-6717-01 15 70968854 70968854 T G UACA Missense_Mutation p.K370T 0.17 deleterious(0) possibly_damaging(0.752) TCGA-CA-6717-01 15 70976613 70976613 T C UACA Missense_Mutation p.T259A 0.09 tolerated(0.74) benign(0.007) TCGA-CA-6717-01 15 70991933 70991933 T G UACA Missense_Mutation p.K49Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 71143860 71143860 A C LARP6 Intron 0.29 TCGA-CA-6717-01 15 71272443 71272443 G T LRRC49 Nonsense_Mutation p.E314* 0.20 TCGA-CA-6717-01 15 71534990 71534990 G A THSD4 Missense_Mutation p.S156N 0.12 tolerated(0.09) benign(0.004) TCGA-CA-6717-01 15 71839772 71839772 A G THSD4 Intron 0.17 TCGA-CA-6717-01 15 71953048 71953048 G T THSD4 Missense_Mutation p.E444D 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6717-01 15 72102988 72102988 G A NR2E3 RNA 0.31 TCGA-CA-6717-01 15 72190934 72190934 G A MYO9A Missense_Mutation p.R1304C 0.19 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-CA-6717-01 15 72338385 72338385 T G MYO9A Missense_Mutation p.K174Q 0.24 deleterious(0.01) possibly_damaging(0.466) TCGA-CA-6717-01 15 72431941 72431941 C A SENP8 5'UTR 0.29 TCGA-CA-6717-01 15 72432910 72432910 C T SENP8 3'UTR 0.12 TCGA-CA-6717-01 15 72433207 72433207 T C SENP8 3'UTR 0.29 TCGA-CA-6717-01 15 72534512 72534512 A G PARP6 Missense_Mutation p.I564T 0.15 deleterious(0) possibly_damaging(0.811) TCGA-CA-6717-01 15 72579667 72579667 A C CELF6 Missense_Mutation p.I462S 0.13 deleterious(0) possibly_damaging(0.749) TCGA-CA-6717-01 15 72639085 72639085 A G HEXA Intron 0.18 TCGA-CA-6717-01 15 72698944 72698944 T A TMEM202 Nonsense_Mutation p.Y113* 0.18 TCGA-CA-6717-01 15 72855836 72855836 A C ARIH1 Missense_Mutation p.Q302H 0.11 tolerated(0.12) possibly_damaging(0.793) TCGA-CA-6717-01 15 72864493 72864493 G A ARIH1 Missense_Mutation p.R401K 0.14 tolerated(0.06) possibly_damaging(0.488) TCGA-CA-6717-01 15 73023783 73023783 G T BBS4 Missense_Mutation p.K283N 0.11 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 15 73580823 73580823 T G NEO1 Missense_Mutation p.S1194A 0.11 tolerated(0.17) possibly_damaging(0.588) TCGA-CA-6717-01 15 73590734 73590734 C T NEO1 Missense_Mutation p.S1316L 0.23 tolerated(0.21) possibly_damaging(0.809) TCGA-CA-6717-01 15 74032702 74032702 C T C15orf59 Silent p.T146T 0.18 TCGA-CA-6717-01 15 74426376 74426376 T C ISLR2 Silent p.I427I 0.33 TCGA-CA-6717-01 15 74468111 74468111 C T ISLR Silent p.F304F 0.17 TCGA-CA-6717-01 15 74468721 74468721 C A ISLR 3'UTR 0.15 TCGA-CA-6717-01 15 74489766 74489766 T G STRA6 Splice_Site p.X100_splice 0.18 TCGA-CA-6717-01 15 74627361 74627361 G A CCDC33 Missense_Mutation p.A691T 0.30 tolerated(0.05) probably_damaging(0.981) TCGA-CA-6717-01 15 74630271 74630271 C A CYP11A1 3'UTR 0.28 TCGA-CA-6717-01 15 74630405 74630405 C T CYP11A1 Missense_Mutation p.D492N 0.08 tolerated(0.07) possibly_damaging(0.719) TCGA-CA-6717-01 15 74635419 74635419 C T CYP11A1 Missense_Mutation p.D297N 0.22 tolerated(0.61) benign(0) TCGA-CA-6717-01 15 74964033 74964033 C A EDC3 Nonsense_Mutation p.E83* 0.08 TCGA-CA-6717-01 15 75498615 75498615 G A C15orf39 Missense_Mutation p.G76S 0.11 tolerated(1) benign(0) TCGA-CA-6717-01 15 75562415 75562415 T G GOLGA6C Missense_Mutation p.F653V 0.18 deleterious(0.01) benign(0.124) TCGA-CA-6717-01 15 75647512 75647512 T G NEIL1 3'UTR 0.17 TCGA-CA-6717-01 15 75655032 75655032 G A MAN2C1 Missense_Mutation p.A283V 0.25 tolerated(1) benign(0.003) TCGA-CA-6717-01 15 75668035 75668035 G A SIN3A Missense_Mutation p.R1188W 0.11 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 15 75703908 75703908 A C SIN3A Silent p.V311V 0.15 TCGA-CA-6717-01 15 75979660 75979660 A G CSPG4 Missense_Mutation p.V1249A 0.12 tolerated(0.07) benign(0.263) TCGA-CA-6717-01 15 75981558 75981558 G T CSPG4 Missense_Mutation p.F616L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 75982483 75982483 G A CSPG4 Missense_Mutation p.S308L 0.09 deleterious(0) possibly_damaging(0.8) TCGA-CA-6717-01 15 76206460 76206460 G T FBXO22 Missense_Mutation p.R126I 0.11 deleterious(0) benign(0.175) TCGA-CA-6717-01 15 76225111 76225111 G A FBXO22 Missense_Mutation p.E294K 0.16 tolerated(0.1) benign(0.129) TCGA-CA-6717-01 15 76235944 76235944 A C NRG4 3'UTR 0.11 TCGA-CA-6717-01 15 76584843 76584843 G C ETFA Missense_Mutation p.P94A 0.12 tolerated(0.19) benign(0.169) TCGA-CA-6717-01 15 76914151 76914151 A C SCAPER Missense_Mutation p.L889V 0.20 tolerated(0.37) benign(0.128) TCGA-CA-6717-01 15 77176169 77176169 C A SCAPER 5'UTR 0.14 TCGA-CA-6717-01 15 77346612 77346612 C A TSPAN3 Nonsense_Mutation p.E114* 0.10 TCGA-CA-6717-01 15 77451001 77451001 G A PEAK1 Missense_Mutation p.R1059W 0.17 tolerated(0.08) benign(0) TCGA-CA-6717-01 15 77759491 77759491 C T HMG20A Nonsense_Mutation p.R98* 0.15 TCGA-CA-6717-01 15 78473257 78473257 G A ACSBG1 Missense_Mutation p.R365W 0.14 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 15 78568044 78568044 G A DNAJA4 Missense_Mutation p.R313Q 0.33 deleterious(0.02) possibly_damaging(0.79) TCGA-CA-6717-01 15 78572481 78572481 G T DNAJA4 Missense_Mutation p.Q353H 0.11 tolerated(0.4) benign(0.019) TCGA-CA-6717-01 15 78765765 78765765 A C IREB2 Intron 0.09 TCGA-CA-6717-01 15 78841257 78841257 G T PSMA4 Nonsense_Mutation p.E253* 0.20 TCGA-CA-6717-01 15 78841423 78841423 T C PSMA4 3'UTR 0.50 TCGA-CA-6717-01 15 79184641 79184641 A G MORF4L1 Missense_Mutation p.T215A 0.10 deleterious(0.01) benign(0.062) TCGA-CA-6717-01 15 79185920 79185920 C A MORF4L1 Missense_Mutation p.L233I 0.15 tolerated(0.08) possibly_damaging(0.729) TCGA-CA-6717-01 15 79186414 79186414 A C MORF4L1 Missense_Mutation p.N254T 0.07 tolerated(0.6) benign(0.01) TCGA-CA-6717-01 15 79231512 79231512 C T CTSH Silent p.E31E 0.16 TCGA-CA-6717-01 15 79296395 79296395 G A RASGRF1 Missense_Mutation p.S749L 0.13 deleterious(0.01) probably_damaging(0.951) TCGA-CA-6717-01 15 79341838 79341838 C G RASGRF1 Missense_Mutation p.K208N 0.10 deleterious(0) probably_damaging(0.937) TCGA-CA-6717-01 15 79588019 79588019 T G ANKRD34C 3'UTR 0.15 TCGA-CA-6717-01 15 79589423 79589423 A C ANKRD34C 3'UTR 0.13 TCGA-CA-6717-01 15 79590092 79590092 G T ANKRD34C 3'UTR 0.09 TCGA-CA-6717-01 15 79748826 79748826 C T KIAA1024 Missense_Mutation p.R113C 0.12 tolerated(0.18) benign(0.006) TCGA-CA-6717-01 15 79749206 79749206 G T KIAA1024 Missense_Mutation p.E239D 0.10 tolerated(0.43) benign(0.002) TCGA-CA-6717-01 15 80253515 80253515 T G BCL2A1 Missense_Mutation p.E141A 0.19 deleterious(0.01) possibly_damaging(0.777) TCGA-CA-6717-01 15 80263087 80263087 G T BCL2A1 Missense_Mutation p.F125L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 15 80423583 80423583 G A ZFAND6 Silent p.P142P 0.14 TCGA-CA-6717-01 15 80845041 80845041 T C ARNT2 Missense_Mutation p.S339P 0.14 deleterious(0) possibly_damaging(0.474) TCGA-CA-6717-01 15 81234605 81234605 A C KIAA1199 Missense_Mutation p.H1209P 0.12 tolerated(0.26) possibly_damaging(0.555) TCGA-CA-6717-01 15 81572103 81572103 T C IL16 Missense_Mutation p.S357P 0.28 deleterious(0.03) probably_damaging(0.972) TCGA-CA-6717-01 15 81625521 81625521 C T TMC3 Missense_Mutation p.E848K 0.14 tolerated_low_confidence(0.16) benign(0.005) TCGA-CA-6717-01 15 81637199 81637199 A G TMC3 Missense_Mutation p.S476P 0.21 tolerated(1) benign(0) TCGA-CA-6717-01 15 82444002 82444002 T G EFTUD1 Missense_Mutation p.Q931H 0.11 tolerated(0.13) benign(0.001) TCGA-CA-6717-01 15 82575071 82575071 T G FAM154B Missense_Mutation p.F289V 0.11 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 15 83218322 83218322 G A CPEB1 Silent p.V429V 0.22 TCGA-CA-6717-01 15 83532990 83532990 C T HOMER2 Missense_Mutation p.V106M 0.09 deleterious(0.01) possibly_damaging(0.892) TCGA-CA-6717-01 15 83689480 83689480 A C BTBD1 Missense_Mutation p.F364V 0.14 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 15 83926268 83926268 G A BNC1 Missense_Mutation p.R971C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 83932488 83932488 A C BNC1 Silent p.P505P 0.19 TCGA-CA-6717-01 15 84116331 84116331 G T SH3GL3 Splice_Site p.X15_splice 0.24 TCGA-CA-6717-01 15 84286945 84286945 A G SH3GL3 Missense_Mutation p.Q317R 0.27 tolerated(0.29) benign(0.057) TCGA-CA-6717-01 15 84690176 84690176 C T ADAMTSL3 Missense_Mutation p.P1430S 0.18 tolerated(0.39) benign(0.016) TCGA-CA-6717-01 15 85165791 85165791 C A ZSCAN2 3'UTR 0.09 TCGA-CA-6717-01 15 85166825 85166825 G A ZSCAN2 3'UTR 0.08 TCGA-CA-6717-01 15 85448850 85448850 C A SLC28A1 Missense_Mutation p.F228L 0.27 tolerated(0.2) probably_damaging(0.998) TCGA-CA-6717-01 15 85467224 85467224 T G SLC28A1 Silent p.A322A 0.14 TCGA-CA-6717-01 15 85659316 85659316 G T PDE8A Missense_Mutation p.D501Y 0.23 deleterious(0) possibly_damaging(0.806) TCGA-CA-6717-01 15 86251307 86251307 T C AKAP13 Missense_Mutation p.V1845A 0.12 deleterious(0.01) possibly_damaging(0.469) TCGA-CA-6717-01 15 86259119 86259119 G A AKAP13 Silent p.S1904S 0.14 TCGA-CA-6717-01 15 86270450 86270450 C A AKAP13 Missense_Mutation p.Q2330K 0.10 deleterious(0.05) benign(0.048) TCGA-CA-6717-01 15 86702186 86702186 A C AGBL1 Silent p.G93G 0.10 TCGA-CA-6717-01 15 86807791 86807791 G A AGBL1 Silent p.P417P 0.33 TCGA-CA-6717-01 15 86807930 86807930 G A AGBL1 Missense_Mutation p.D464N 0.22 tolerated(0.1) benign(0.027) TCGA-CA-6717-01 15 86940627 86940627 G A AGBL1 Missense_Mutation p.R756Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 88678402 88678402 G T NTRK3 Silent p.L378L 0.19 TCGA-CA-6717-01 15 89060018 89060018 T C DET1 Silent p.P497P 0.13 TCGA-CA-6717-01 15 89074630 89074630 C A DET1 Nonsense_Mutation p.E114* 0.27 TCGA-CA-6717-01 15 89388767 89388767 C A ACAN Missense_Mutation p.F361L 0.23 tolerated(0.1) unknown(0) TCGA-CA-6717-01 15 89395183 89395183 A G ACAN Missense_Mutation p.I729V 0.17 tolerated_low_confidence(1) unknown(0) TCGA-CA-6717-01 15 89398459 89398459 C T ACAN Silent p.D881D 0.31 TCGA-CA-6717-01 15 89415280 89415280 C A ACAN Silent p.I2384I 0.08 TCGA-CA-6717-01 15 89843137 89843137 A C FANCI Missense_Mutation p.I915L 0.27 deleterious(0.01) benign(0.109) TCGA-CA-6717-01 15 89848887 89848887 A C FANCI Missense_Mutation p.I1103L 0.22 tolerated(0.18) benign(0.05) TCGA-CA-6717-01 15 89856154 89856154 A G FANCI Missense_Mutation p.N1224S 0.27 tolerated(0.68) benign(0.002) TCGA-CA-6717-01 15 90164725 90164725 C T TICRR Nonsense_Mutation p.R1086* 0.23 TCGA-CA-6717-01 15 90168261 90168261 C T TICRR Nonsense_Mutation p.R1574* 0.15 TCGA-CA-6717-01 15 90226809 90226809 T C PEX11A Silent p.L181L 0.18 TCGA-CA-6717-01 15 90274678 90274678 C A WDR93 Silent p.P405P 0.17 TCGA-CA-6717-01 15 90276270 90276270 G T WDR93 Missense_Mutation p.G455V 0.09 tolerated(0.06) benign(0.409) TCGA-CA-6717-01 15 90276452 90276452 T C WDR93 Splice_Site p.X515_splice 0.15 TCGA-CA-6717-01 15 90336308 90336308 T G ANPEP Missense_Mutation p.N736T 0.11 tolerated(0.29) benign(0) TCGA-CA-6717-01 15 90342528 90342528 G A ANPEP Missense_Mutation p.R658W 0.13 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 15 90446506 90446506 G A C15orf38-AP3S2 Missense_Mutation p.S205L 0.33 tolerated_low_confidence(0.11) benign(0.126) TCGA-CA-6717-01 15 90796571 90796571 A G TTLL13 Missense_Mutation p.E130G 0.12 deleterious(0) benign(0.043) TCGA-CA-6717-01 15 90972897 90972897 A C IQGAP1 Missense_Mutation p.K130T 0.10 tolerated(0.27) benign(0.121) TCGA-CA-6717-01 15 91136927 91136927 G A CRTC3 Silent p.R97R 0.10 TCGA-CA-6717-01 15 91422675 91422675 T C FURIN Missense_Mutation p.V352A 0.20 deleterious(0.01) possibly_damaging(0.687) TCGA-CA-6717-01 15 91551107 91551107 T C VPS33B Missense_Mutation p.Y164C 0.22 deleterious(0.03) possibly_damaging(0.866) TCGA-CA-6717-01 15 92669332 92669332 G A SLCO3A1 Missense_Mutation p.G406R 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 15 92937378 92937378 C T ST8SIA2 Silent p.I28I 0.15 TCGA-CA-6717-01 15 93528753 93528753 A G CHD2 Missense_Mutation p.D1088G 0.13 tolerated(0.38) benign(0.005) TCGA-CA-6717-01 15 99672311 99672311 A C SYNM Missense_Mutation p.Y1248S 0.12 tolerated(0.39) benign(0.011) TCGA-CA-6717-01 15 99901587 99901587 T G LRRC28 Missense_Mutation p.S248A 0.07 tolerated(0.35) benign(0.004) TCGA-CA-6717-01 16 10775849 10775849 C T TEKT5 Splice_Site p.X288_splice 0.16 TCGA-CA-6717-01 16 11065051 11065051 A C CLEC16A Missense_Mutation p.I188L 0.10 deleterious(0) probably_damaging(0.963) TCGA-CA-6717-01 16 11066819 11066819 A G CLEC16A Missense_Mutation p.Y210C 0.10 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 16 11154784 11154784 G A CLEC16A Missense_Mutation p.R674H 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 16 11370099 11370099 G T PRM2 Silent p.V43V 0.26 TCGA-CA-6717-01 16 11771179 11771179 C A SNN 3'UTR 0.11 TCGA-CA-6717-01 16 11771733 11771733 T G SNN 3'UTR 0.13 TCGA-CA-6717-01 16 11785600 11785600 A C TXNDC11 Missense_Mutation p.F482L 0.14 tolerated(0.38) benign(0.164) TCGA-CA-6717-01 16 11792004 11792004 C T TXNDC11 Missense_Mutation p.E362K 0.10 tolerated(0.09) probably_damaging(0.963) TCGA-CA-6717-01 16 11980675 11980675 A G GSPT1 Silent p.I357I 0.06 TCGA-CA-6717-01 16 12059060 12059060 G A TNFRSF17 5'UTR 0.30 TCGA-CA-6717-01 16 12060077 12060077 G A TNFRSF17 Silent p.T52T 0.22 TCGA-CA-6717-01 16 1250716 1250716 G A CACNA1H Missense_Mutation p.V374M 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 16 1257082 1257082 C T CACNA1H Silent p.F957F 0.12 TCGA-CA-6717-01 16 1257830 1257830 T G CACNA1H Missense_Mutation p.F1042V 0.10 tolerated(0.27) benign(0.156) TCGA-CA-6717-01 16 14022058 14022058 C T ERCC4 Missense_Mutation p.S253F 0.16 deleterious(0) probably_damaging(0.928) TCGA-CA-6717-01 16 1470254 1470254 C A C16orf91 Intron 0.15 TCGA-CA-6717-01 16 14761658 14761658 C T BFAR Missense_Mutation p.R443W 0.08 deleterious(0.01) probably_damaging(0.935) TCGA-CA-6717-01 16 1485991 1485991 C A CCDC154 Missense_Mutation p.E537D 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 16 14958549 14958549 C A NOMO1 Missense_Mutation p.F501L 0.14 deleterious(0.05) benign(0.405) TCGA-CA-6717-01 16 15125639 15125639 G A PDXDC1 Missense_Mutation p.E483K 0.09 tolerated(1) benign(0) TCGA-CA-6717-01 16 15155736 15155736 G T RRN3 Missense_Mutation p.D607E 0.20 deleterious(0.04) probably_damaging(0.935) TCGA-CA-6717-01 16 1536135 1536135 G A PTX4 Silent p.F409F 0.24 TCGA-CA-6717-01 16 15690426 15690426 T C KIAA0430 3'UTR 0.17 TCGA-CA-6717-01 16 15728742 15728742 A C KIAA0430 Missense_Mutation p.I293R 0.09 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CA-6717-01 16 15729613 15729613 G A KIAA0430 Missense_Mutation p.S244L 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.49) TCGA-CA-6717-01 16 15835632 15835632 T C MYH11 Silent p.E886E 0.08 TCGA-CA-6717-01 16 15857723 15857723 G T MYH11 Silent p.V360V 0.16 TCGA-CA-6717-01 16 15932002 15932002 G T MYH11 Silent p.V36V 0.23 TCGA-CA-6717-01 16 16218732 16218732 G A ABCC1 Missense_Mutation p.S1226N 0.23 tolerated(0.42) possibly_damaging(0.768) TCGA-CA-6717-01 16 16248613 16248613 G A ABCC6 Silent p.L1360L 0.11 TCGA-CA-6717-01 16 16267148 16267148 T G ABCC6 Missense_Mutation p.Y927S 0.08 tolerated(0.23) benign(0.001) TCGA-CA-6717-01 16 16271460 16271460 T G ABCC6 Silent p.A813A 0.20 TCGA-CA-6717-01 16 1747847 1747847 A G HN1L Missense_Mutation p.K124R 0.09 tolerated(0.19) benign(0.005) TCGA-CA-6717-01 16 1808990 1808990 T G MAPK8IP3 Missense_Mutation p.F413V 0.10 tolerated(0.07) benign(0.141) TCGA-CA-6717-01 16 18584372 18584372 A G RP11-457I16.2 5'Flank 0.12 TCGA-CA-6717-01 16 1884190 1884190 T G MEIOB 3'UTR 0.24 TCGA-CA-6717-01 16 18849875 18849875 T G SMG1 Missense_Mutation p.K2361T 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 16 18859183 18859183 T C SMG1 Silent p.K1932K 0.26 TCGA-CA-6717-01 16 18859353 18859353 T C SMG1 Missense_Mutation p.N1876D 0.18 tolerated(0.12) benign(0.007) TCGA-CA-6717-01 16 18870909 18870909 C T SMG1 Missense_Mutation p.E1308K 0.16 tolerated(0.06) benign(0.112) TCGA-CA-6717-01 16 1891830 1891830 C T MEIOB Missense_Mutation p.R342Q 0.25 tolerated(0.05) possibly_damaging(0.739) TCGA-CA-6717-01 16 19129983 19129983 A T ITPRIPL2 3'UTR 0.17 TCGA-CA-6717-01 16 19131263 19131263 C A ITPRIPL2 3'UTR 0.11 TCGA-CA-6717-01 16 19183979 19183979 T G SYT17 Intron 0.13 TCGA-CA-6717-01 16 19505642 19505642 A G TMC5 Missense_Mutation p.K962R 0.16 tolerated(0.23) benign(0.008) TCGA-CA-6717-01 16 19547278 19547278 A G CCP110 Missense_Mutation p.N96S 0.11 tolerated(0.57) benign(0.006) TCGA-CA-6717-01 16 19553236 19553236 A C CCP110 Missense_Mutation p.K693Q 0.18 tolerated(0.06) probably_damaging(0.991) TCGA-CA-6717-01 16 19576187 19576187 G A C16orf62 Missense_Mutation p.R100K 0.09 deleterious(0.03) probably_damaging(0.969) TCGA-CA-6717-01 16 19693560 19693560 A G C16orf62 Missense_Mutation p.H881R 0.14 tolerated(0.18) benign(0.023) TCGA-CA-6717-01 16 1995519 1995519 T C RPL3L Missense_Mutation p.Q383R 0.13 deleterious(0.04) benign(0.028) TCGA-CA-6717-01 16 20043912 20043912 G A GPR139 Silent p.L69L 0.09 TCGA-CA-6717-01 16 20335452 20335452 C T GP2 Missense_Mutation p.R74Q 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 20344541 20344541 T G UMOD 3'UTR 0.24 TCGA-CA-6717-01 16 20357567 20357567 C T UMOD Missense_Mutation p.D355N 0.12 tolerated(0.17) benign(0.006) TCGA-CA-6717-01 16 20359595 20359595 G A UMOD Missense_Mutation p.S308L 0.12 tolerated(0.74) benign(0.007) TCGA-CA-6717-01 16 20373879 20373879 C A PDILT Missense_Mutation p.K421N 0.09 deleterious(0.02) possibly_damaging(0.776) TCGA-CA-6717-01 16 20396019 20396019 C T PDILT Silent p.P119P 0.15 TCGA-CA-6717-01 16 20477043 20477043 C T ACSM2A Nonsense_Mutation p.R128* 0.17 TCGA-CA-6717-01 16 20482940 20482940 G T ACSM2A Nonsense_Mutation p.E275* 0.20 TCGA-CA-6717-01 16 20681287 20681287 C A ACSM1 Missense_Mutation p.K258N 0.26 tolerated(0.11) possibly_damaging(0.732) TCGA-CA-6717-01 16 20702407 20702407 A C ACSM1 Missense_Mutation p.F35C 0.11 tolerated(0.05) benign(0.002) TCGA-CA-6717-01 16 20838385 20838385 C T AC004381.6 Missense_Mutation p.S276L 0.10 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 16 20844430 20844430 T C AC004381.6 Silent p.C456C 0.14 TCGA-CA-6717-01 16 20996452 20996452 C A DNAH3 Nonsense_Mutation p.G2538* 0.24 TCGA-CA-6717-01 16 20997001 20997001 C T DNAH3 Missense_Mutation p.D2355N 0.08 tolerated(0.07) benign(0.288) TCGA-CA-6717-01 16 21008663 21008663 C T DNAH3 Silent p.V2181V 0.15 TCGA-CA-6717-01 16 21033373 21033373 C T DNAH3 Missense_Mutation p.R1899H 0.26 tolerated(0.1) benign(0.002) TCGA-CA-6717-01 16 21051174 21051174 C T DNAH3 Missense_Mutation p.S1577N 0.10 tolerated(0.26) benign(0.035) TCGA-CA-6717-01 16 21073889 21073889 T C DNAH3 Missense_Mutation p.T1212A 0.17 deleterious(0.02) possibly_damaging(0.465) TCGA-CA-6717-01 16 21073985 21073985 C T DNAH3 Missense_Mutation p.D1180N 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 21086884 21086884 T G DNAH3 Splice_Site p.X990_splice 0.12 TCGA-CA-6717-01 16 21117955 21117955 C A DNAH3 Nonsense_Mutation p.E714* 0.14 TCGA-CA-6717-01 16 21139066 21139066 C A DNAH3 Nonsense_Mutation p.E384* 0.12 TCGA-CA-6717-01 16 21139067 21139067 C A DNAH3 Missense_Mutation p.Q383H 0.17 tolerated(0.22) benign(0) TCGA-CA-6717-01 16 21172579 21172579 T A TMEM159 Missense_Mutation p.S26T 0.17 tolerated(0.29) possibly_damaging(0.879) TCGA-CA-6717-01 16 21245128 21245128 G T ANKS4B Missense_Mutation p.D24Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 16 21636291 21636291 G T METTL9 Missense_Mutation p.Q202H 0.22 tolerated(0.07) probably_damaging(0.942) TCGA-CA-6717-01 16 21995642 21995642 T G PDZD9 Missense_Mutation p.E187D 0.18 tolerated(0.08) probably_damaging(0.998) TCGA-CA-6717-01 16 22108960 22108960 C T VWA3A Nonsense_Mutation p.Q57* 0.09 TCGA-CA-6717-01 16 22336534 22336534 A G POLR3E Missense_Mutation p.K432R 0.11 deleterious(0.02) possibly_damaging(0.714) TCGA-CA-6717-01 16 22358666 22358666 C T CDR2 Missense_Mutation p.E329K 0.12 tolerated(0.44) possibly_damaging(0.732) TCGA-CA-6717-01 16 22360729 22360729 A G CDR2 Missense_Mutation p.I126T 0.19 deleterious(0) possibly_damaging(0.474) TCGA-CA-6717-01 16 22563826 22563826 C A RP11-368J21.3 RNA 0.08 TCGA-CA-6717-01 16 2331062 2331062 A G ABCA3 Missense_Mutation p.V1442A 0.12 deleterious(0) benign(0.278) TCGA-CA-6717-01 16 23593615 23593615 A G NDUFAB1 Missense_Mutation p.V154A 0.18 deleterious(0.04) benign(0.356) TCGA-CA-6717-01 16 23625394 23625394 T C PALB2 Silent p.Q1044Q 0.11 TCGA-CA-6717-01 16 23649187 23649187 C T PALB2 Silent p.P65P 0.20 TCGA-CA-6717-01 16 23712410 23712410 A C ERN2 Missense_Mutation p.L458R 0.20 tolerated(0.56) benign(0.02) TCGA-CA-6717-01 16 23718384 23718384 A G ERN2 Missense_Mutation p.I156T 0.22 deleterious(0) possibly_damaging(0.818) TCGA-CA-6717-01 16 24366264 24366264 C A CACNG3 Missense_Mutation p.L136I 0.15 deleterious(0) possibly_damaging(0.597) TCGA-CA-6717-01 16 24788506 24788506 G A TNRC6A Missense_Mutation p.R139Q 0.19 deleterious(0.03) benign(0.033) TCGA-CA-6717-01 16 24805969 24805969 A G TNRC6A Missense_Mutation p.N1153D 0.09 deleterious(0.03) possibly_damaging(0.761) TCGA-CA-6717-01 16 24835087 24835087 C A TNRC6A Missense_Mutation p.L1950I 0.15 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 16 24922755 24922755 A C SLC5A11 Silent p.I643I 0.11 TCGA-CA-6717-01 16 2493718 2493718 C T CCNF Silent p.I282I 0.17 TCGA-CA-6717-01 16 2503473 2503473 G A CCNF Silent p.P550P 0.24 TCGA-CA-6717-01 16 2510691 2510691 C A C16orf59 Missense_Mutation p.P65T 0.28 tolerated(0.17) benign(0.007) TCGA-CA-6717-01 16 2514594 2514594 C T C16orf59 Silent p.C409C 0.11 TCGA-CA-6717-01 16 25704412 25704412 C T HS3ST4 Missense_Mutation p.A225V 0.12 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 16 2580428 2580428 C T AMDHD2 Nonsense_Mutation p.R485* 0.14 TCGA-CA-6717-01 16 27078651 27078651 A G C16orf82 RNA 0.18 TCGA-CA-6717-01 16 27232093 27232093 C A KDM8 3'UTR 0.11 TCGA-CA-6717-01 16 27236512 27236512 G A NSMCE1 Missense_Mutation p.S256L 0.25 deleterious_low_confidence(0.02) benign(0.001) TCGA-CA-6717-01 16 27549218 27549218 T G GTF3C1 Missense_Mutation p.R213S 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 27760999 27760999 C T KIAA0556 Silent p.F906F 0.17 TCGA-CA-6717-01 16 27765498 27765498 C T KIAA0556 Missense_Mutation p.P1186L 0.15 tolerated(0.52) benign(0.013) TCGA-CA-6717-01 16 2813749 2813749 C T SRRM2 Missense_Mutation p.P1074S 0.14 unknown(0) TCGA-CA-6717-01 16 2815144 2815144 T C SRRM2 Missense_Mutation p.S1539P 0.19 unknown(0) TCGA-CA-6717-01 16 28607210 28607210 G A SULT1A2 Silent p.Y14Y 0.12 TCGA-CA-6717-01 16 2871110 2871110 C T PRSS21 Silent p.F235F 0.18 TCGA-CA-6717-01 16 28843822 28843822 G T ATXN2L Nonsense_Mutation p.E508* 0.25 TCGA-CA-6717-01 16 28848174 28848174 G A ATXN2L 3'UTR 0.19 TCGA-CA-6717-01 16 28856796 28856796 C T TUFM Missense_Mutation p.A85T 0.10 deleterious(0.01) benign(0.084) TCGA-CA-6717-01 16 29088001 29088001 G T RRN3P2 RNA 0.17 TCGA-CA-6717-01 16 29105626 29105626 A G RRN3P2 RNA 0.20 TCGA-CA-6717-01 16 29675785 29675785 C T SPN Missense_Mutation p.R246W 0.13 deleterious(0.02) benign(0.129) TCGA-CA-6717-01 16 29824532 29824532 A C PRRT2 Missense_Mutation p.N53H 0.15 deleterious_low_confidence(0) benign(0.034) TCGA-CA-6717-01 16 29828601 29828601 A G PAGR1 Missense_Mutation p.R185G 0.16 deleterious(0.03) benign(0.034) TCGA-CA-6717-01 16 30006441 30006441 C T HIRIP3 Missense_Mutation p.R95H 0.14 deleterious(0.02) possibly_damaging(0.877) TCGA-CA-6717-01 16 30080257 30080257 A G ALDOA Silent p.E220E 0.09 TCGA-CA-6717-01 16 30364225 30364225 T G CD2BP2 3'UTR 0.33 TCGA-CA-6717-01 16 30505572 30505572 C T ITGAL Missense_Mutation p.S418L 0.10 tolerated(0.21) benign(0.002) TCGA-CA-6717-01 16 30732650 30732650 A G SRCAP Missense_Mutation p.T1132A 0.09 unknown(0) TCGA-CA-6717-01 16 31094498 31094498 C T ZNF646 3'UTR 0.14 TCGA-CA-6717-01 16 31106932 31106932 C A VKORC1 5'Flank 0.11 TCGA-CA-6717-01 16 31142141 31142141 G A KAT8 Missense_Mutation p.G411D 0.15 deleterious(0) probably_damaging(0.965) TCGA-CA-6717-01 16 31213010 31213010 G A PYCARD Missense_Mutation p.L162F 0.14 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 16 31332844 31332844 G T ITGAM Missense_Mutation p.R634M 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6717-01 16 31372440 31372440 G A ITGAX Silent p.S306S 0.24 TCGA-CA-6717-01 16 31425832 31425832 G A ITGAD Missense_Mutation p.R686H 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 31435264 31435264 C T ITGAD Silent p.F1048F 0.21 TCGA-CA-6717-01 16 31447521 31447521 C T ZNF843 Missense_Mutation p.R217Q 0.16 deleterious_low_confidence(0) benign(0.417) TCGA-CA-6717-01 16 31485485 31485485 C A TGFB1I1 Missense_Mutation p.S113Y 0.13 deleterious(0.02) probably_damaging(0.992) TCGA-CA-6717-01 16 3254840 3254840 A G OR1F1 Missense_Mutation p.I198M 0.19 tolerated(1) benign(0.012) TCGA-CA-6717-01 16 3255151 3255151 A C OR1F1 Missense_Mutation p.K302T 0.20 tolerated(0.18) benign(0.002) TCGA-CA-6717-01 16 3299659 3299659 G T MEFV Silent p.A344A 0.22 TCGA-CA-6717-01 16 3339914 3339914 T C ZNF263 Missense_Mutation p.C470R 0.21 deleterious(0) benign(0.033) TCGA-CA-6717-01 16 334420 334420 C T PDIA2 Missense_Mutation p.A78V 0.28 deleterious(0.03) probably_damaging(0.963) TCGA-CA-6717-01 16 3349496 3349496 G T TIGD7 Silent p.I373I 0.15 TCGA-CA-6717-01 16 3350460 3350460 A C TIGD7 Missense_Mutation p.I52S 0.21 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 16 3351776 3351776 A C TIGD7 5'UTR 0.20 TCGA-CA-6717-01 16 3351972 3351972 G A TIGD7 5'UTR 0.28 TCGA-CA-6717-01 16 3406487 3406487 G A OR2C1 Missense_Mutation p.A183T 0.12 deleterious(0) possibly_damaging(0.825) TCGA-CA-6717-01 16 3486654 3486654 T G ZNF597 Missense_Mutation p.T349P 0.32 deleterious(0.01) probably_damaging(0.911) TCGA-CA-6717-01 16 3487130 3487130 C T ZNF597 Missense_Mutation p.G190E 0.35 tolerated(0.22) benign(0.245) TCGA-CA-6717-01 16 3529516 3529516 C A NAA60 Missense_Mutation p.F52L 0.29 deleterious(0) benign(0.241) TCGA-CA-6717-01 16 3707907 3707907 G A DNASE1 Missense_Mutation p.A268T 0.33 deleterious(0.03) benign(0.336) TCGA-CA-6717-01 16 396408 396408 A C AXIN1 Missense_Mutation p.I206M 0.20 deleterious(0.01) benign(0.35) TCGA-CA-6717-01 16 4163814 4163814 C T ADCY9 Missense_Mutation p.E544K 0.20 tolerated(0.3) benign(0.003) TCGA-CA-6717-01 16 419104 419104 G T MRPL28 Silent p.I135I 0.16 TCGA-CA-6717-01 16 4242648 4242648 C A SRL Nonsense_Mutation p.E310* 0.19 TCGA-CA-6717-01 16 4242685 4242685 C A SRL Missense_Mutation p.E297D 0.21 tolerated(0.8) benign(0.002) TCGA-CA-6717-01 16 4254582 4254582 C T SRL Missense_Mutation p.E39K 0.21 tolerated(0.11) benign(0.176) TCGA-CA-6717-01 16 4412057 4412057 C T CORO7 Missense_Mutation p.G503S 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 16 4626072 4626072 G T C16orf96 Missense_Mutation p.D531Y 0.12 deleterious_low_confidence(0.02) probably_damaging(0.934) TCGA-CA-6717-01 16 46716007 46716007 C A VPS35 Missense_Mutation p.K61N 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 46743453 46743453 T C MYLK3 Missense_Mutation p.K800E 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 16 47117343 47117343 G T NETO2 Missense_Mutation p.S456Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-CA-6717-01 16 47698874 47698874 A G PHKB Silent p.V805V 0.11 TCGA-CA-6717-01 16 47727313 47727313 C T PHKB Silent p.I930I 0.11 TCGA-CA-6717-01 16 4797027 4797027 G T C16orf71 Splice_Site p.X427_splice 0.26 TCGA-CA-6717-01 16 48138201 48138201 C T ABCC12 Missense_Mutation p.E918K 0.23 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 16 48142418 48142418 C A ABCC12 Missense_Mutation p.Q768H 0.20 deleterious(0.03) benign(0.022) TCGA-CA-6717-01 16 48172140 48172140 T G ABCC12 Missense_Mutation p.Q326H 0.11 tolerated(0.25) benign(0.013) TCGA-CA-6717-01 16 48172255 48172255 C T ABCC12 Missense_Mutation p.R288Q 0.16 tolerated(0.42) benign(0.379) TCGA-CA-6717-01 16 48180265 48180265 C A ABCC12 Missense_Mutation p.R24I 0.16 deleterious(0) possibly_damaging(0.718) TCGA-CA-6717-01 16 4850535 4850535 G A ROGDI Silent p.F100F 0.10 TCGA-CA-6717-01 16 48595311 48595311 A G N4BP1 Missense_Mutation p.Y415H 0.24 tolerated(0.57) benign(0.11) TCGA-CA-6717-01 16 49671870 49671870 C T ZNF423 Missense_Mutation p.R398Q 0.31 tolerated(0.59) benign(0.003) TCGA-CA-6717-01 16 49764817 49764817 C T ZNF423 Missense_Mutation p.V48M 0.16 tolerated_low_confidence(0.2) benign(0.009) TCGA-CA-6717-01 16 50102695 50102695 C T HEATR3 Missense_Mutation p.L106F 0.10 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 16 50384037 50384037 A C BRD7 Missense_Mutation p.F163C 0.22 deleterious(0.01) possibly_damaging(0.727) TCGA-CA-6717-01 16 50388832 50388832 T C BRD7 Missense_Mutation p.E87G 0.15 deleterious(0.01) benign(0.379) TCGA-CA-6717-01 16 50667762 50667762 C A NKD1 3'UTR 0.21 TCGA-CA-6717-01 16 50707863 50707863 G A SNX20 Silent p.I135I 0.24 TCGA-CA-6717-01 16 50783688 50783688 G T CYLD Nonsense_Mutation p.E27* 0.19 TCGA-CA-6717-01 16 50783950 50783950 A C CYLD Missense_Mutation p.K114T 0.08 tolerated(0.39) benign(0.034) TCGA-CA-6717-01 16 50816264 50816264 A G CYLD Silent p.V571V 0.20 TCGA-CA-6717-01 16 5105344 5105344 G T C16orf89 Missense_Mutation p.F257L 0.11 tolerated(0.49) benign(0.039) TCGA-CA-6717-01 16 51172858 51172858 A C SALL1 Missense_Mutation p.F1092C 0.17 tolerated(0.18) possibly_damaging(0.832) TCGA-CA-6717-01 16 51175243 51175243 G A SALL1 Missense_Mutation p.A297V 0.18 tolerated(0.33) probably_damaging(0.997) TCGA-CA-6717-01 16 51175920 51175920 A C SALL1 Silent p.V71V 0.16 TCGA-CA-6717-01 16 51176034 51176034 C T SALL1 Silent p.P33P 0.13 TCGA-CA-6717-01 16 5135683 5135683 A T FAM86A Missense_Mutation p.F315I 0.09 deleterious(0) possibly_damaging(0.49) TCGA-CA-6717-01 16 53190620 53190620 A G CHD9 Missense_Mutation p.R207G 0.10 benign(0.181) TCGA-CA-6717-01 16 53261465 53261465 A G CHD9 Silent p.S706S 0.23 TCGA-CA-6717-01 16 53276887 53276887 A G CHD9 Missense_Mutation p.K1005E 0.11 possibly_damaging(0.672) TCGA-CA-6717-01 16 53321902 53321902 A G CHD9 Silent p.P1741P 0.09 TCGA-CA-6717-01 16 53326836 53326836 T C CHD9 Silent p.R1794R 0.10 TCGA-CA-6717-01 16 53331022 53331022 G A CHD9 Missense_Mutation p.A1889T 0.18 possibly_damaging(0.859) TCGA-CA-6717-01 16 53404784 53404784 A G RP11-44F14.1 RNA 0.15 TCGA-CA-6717-01 16 53504553 53504553 C A RBL2 Missense_Mutation p.S835Y 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 54145700 54145700 T C FTO Missense_Mutation p.L464S 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 55364229 55364229 C T IRX6 3'UTR 0.29 TCGA-CA-6717-01 16 55527087 55527087 G A MMP2 Missense_Mutation p.D452N 0.22 tolerated(0.49) benign(0.008) TCGA-CA-6717-01 16 55539264 55539264 C A MMP2 Missense_Mutation p.F631L 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-CA-6717-01 16 55579705 55579705 A C LPCAT2 Missense_Mutation p.N304T 0.08 deleterious(0.03) benign(0.021) TCGA-CA-6717-01 16 55584951 55584951 C T LPCAT2 Silent p.F384F 0.19 TCGA-CA-6717-01 16 55601209 55601209 G A CAPNS2 Missense_Mutation p.A181T 0.24 deleterious(0) possibly_damaging(0.744) TCGA-CA-6717-01 16 55855282 55855282 G T CES1 Missense_Mutation p.L231I 0.12 tolerated(0.07) probably_damaging(0.984) TCGA-CA-6717-01 16 55860113 55860113 A G CES1 Missense_Mutation p.Y119H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 16 55880594 55880594 C T CES5A Silent p.G528G 0.16 TCGA-CA-6717-01 16 56385329 56385329 T G GNAO1 3'Flank 0.18 TCGA-CA-6717-01 16 56419878 56419878 T C AMFR Missense_Mutation p.N445D 0.12 tolerated(0.16) benign(0.086) TCGA-CA-6717-01 16 56501925 56501925 C A OGFOD1 Missense_Mutation p.L299I 0.15 tolerated(0.07) possibly_damaging(0.856) TCGA-CA-6717-01 16 56548550 56548550 C T BBS2 Missense_Mutation p.A54T 0.13 tolerated(0.39) benign(0.005) TCGA-CA-6717-01 16 56601668 56601668 A C MT4 Missense_Mutation p.I13L 0.08 tolerated(0.08) benign(0.112) TCGA-CA-6717-01 16 57059389 57059389 T C NLRC5 Silent p.P178P 0.12 TCGA-CA-6717-01 16 57077426 57077426 G A NLRC5 Splice_Site p.X1038_splice 0.09 TCGA-CA-6717-01 16 57115448 57115448 G T NLRC5 Missense_Mutation p.K1805N 0.12 tolerated(0.07) benign(0.15) TCGA-CA-6717-01 16 57180209 57180209 C T CPNE2 Silent p.F505F 0.24 TCGA-CA-6717-01 16 57953011 57953011 G A CNGB1 Missense_Mutation p.P650L 0.09 deleterious(0) benign(0.221) TCGA-CA-6717-01 16 58019336 58019336 G A TEPP Missense_Mutation p.R240H 0.09 tolerated_low_confidence(0.11) benign(0.08) TCGA-CA-6717-01 16 58054213 58054213 A C USB1 3'UTR 0.24 TCGA-CA-6717-01 16 58230690 58230690 A C CSNK2A2 Missense_Mutation p.F55V 0.10 deleterious(0) possibly_damaging(0.721) TCGA-CA-6717-01 16 58426569 58426569 T G GINS3 Missense_Mutation p.L22V 0.13 deleterious(0.01) possibly_damaging(0.607) TCGA-CA-6717-01 16 58538089 58538089 C T NDRG4 Silent p.F105F 0.23 TCGA-CA-6717-01 16 58583772 58583772 C A CNOT1 Nonsense_Mutation p.E1125* 0.13 TCGA-CA-6717-01 16 58621756 58621756 C T CNOT1 Silent p.A79A 0.17 TCGA-CA-6717-01 16 61687839 61687839 A C CDH8 Missense_Mutation p.I691M 0.16 tolerated(0.43) possibly_damaging(0.516) TCGA-CA-6717-01 16 61935150 61935150 G A CDH8 Silent p.I160I 0.22 TCGA-CA-6717-01 16 62055326 62055326 A C CDH8 5'UTR 0.19 TCGA-CA-6717-01 16 64984770 64984770 G A CDH11 Silent p.N598N 0.10 TCGA-CA-6717-01 16 65005506 65005506 T G CDH11 Missense_Mutation p.N540H 0.21 tolerated(0.16) benign(0.365) TCGA-CA-6717-01 16 65032734 65032734 T C CDH11 Missense_Mutation p.D85G 0.10 deleterious(0.01) benign(0.223) TCGA-CA-6717-01 16 66424414 66424414 T C CDH5 Missense_Mutation p.I297T 0.15 deleterious(0) benign(0.201) TCGA-CA-6717-01 16 66562924 66562924 T C TK2 Missense_Mutation p.Y141C 0.18 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 16 66657375 66657375 G T CMTM4 Missense_Mutation p.L132I 0.18 tolerated(0.13) benign(0.243) TCGA-CA-6717-01 16 66785224 66785224 T C DYNC1LI2 Missense_Mutation p.T45A 0.10 tolerated(0.22) possibly_damaging(0.509) TCGA-CA-6717-01 16 66793085 66793085 C A CCDC79 Missense_Mutation p.R630I 0.24 deleterious(0) benign(0.413) TCGA-CA-6717-01 16 66919259 66919259 G T PDP2 Nonsense_Mutation p.E358* 0.26 TCGA-CA-6717-01 16 67174494 67174494 A G C16orf70 Silent p.G292G 0.11 TCGA-CA-6717-01 16 67220201 67220201 A C EXOC3L1 Missense_Mutation p.S479A 0.09 tolerated(1) benign(0.004) TCGA-CA-6717-01 16 67315055 67315055 T C PLEKHG4 Missense_Mutation p.S261P 0.20 tolerated(0.49) benign(0.002) TCGA-CA-6717-01 16 67327880 67327880 A G KCTD19 Silent p.C595C 0.07 TCGA-CA-6717-01 16 67337074 67337074 G A KCTD19 Silent p.C206C 0.26 TCGA-CA-6717-01 16 67381475 67381475 C A LRRC36 Missense_Mutation p.L157I 0.24 tolerated(0.07) probably_damaging(0.999) TCGA-CA-6717-01 16 67405064 67405064 G A LRRC36 Silent p.S471S 0.14 TCGA-CA-6717-01 16 67472491 67472491 G A ATP6V0D1 Silent p.I332I 0.25 TCGA-CA-6717-01 16 67765385 67765385 C A RANBP10 Missense_Mutation p.K293N 0.09 deleterious(0) possibly_damaging(0.697) TCGA-CA-6717-01 16 67865026 67865026 G A CENPT Intron 0.33 TCGA-CA-6717-01 16 67963990 67963990 G A CTRL Silent p.S214S 0.09 TCGA-CA-6717-01 16 67981689 67981689 G A SLC12A4 Missense_Mutation p.A619V 0.11 tolerated(0.06) possibly_damaging(0.532) TCGA-CA-6717-01 16 67988649 67988649 C T SLC12A4 Missense_Mutation p.R193H 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 16 68055474 68055474 T G DDX28 3'UTR 0.13 TCGA-CA-6717-01 16 68156391 68156391 G A NFATC3 Missense_Mutation p.R202Q 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6717-01 16 68597999 68597999 C A ZFP90 Missense_Mutation p.L437I 0.11 deleterious(0.03) probably_damaging(0.917) TCGA-CA-6717-01 16 68598239 68598239 A C ZFP90 Silent p.R517R 0.23 TCGA-CA-6717-01 16 68842333 68842333 G A CDH1 Missense_Mutation p.V132I 0.12 tolerated(0.48) benign(0.029) TCGA-CA-6717-01 16 69148588 69148588 T C HAS3 Missense_Mutation p.Y361H 0.12 deleterious(0) probably_damaging(0.971) TCGA-CA-6717-01 16 69279668 69279669 - A SNTB2 Frame_Shift_Ins p.M250Nfs*6 0.21 TCGA-CA-6717-01 16 69368700 69368700 G T RP11-343C2.12 Missense_Mutation p.F25L 0.14 deleterious(0) probably_damaging(0.944) TCGA-CA-6717-01 16 70076293 70076293 T G PDXDC2P RNA 0.18 TCGA-CA-6717-01 16 70176579 70176579 T G PDPR Missense_Mutation p.F532C 0.10 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 16 70298942 70298942 C T AARS Missense_Mutation p.E471K 0.18 tolerated(0.25) benign(0.195) TCGA-CA-6717-01 16 70305860 70305860 T G AARS Missense_Mutation p.K165N 0.12 deleterious(0.01) benign(0.292) TCGA-CA-6717-01 16 70358494 70358494 G T DDX19B Missense_Mutation p.Q132H 0.08 deleterious(0.02) benign(0.327) TCGA-CA-6717-01 16 70553612 70553612 T C COG4 Missense_Mutation p.D65G 0.09 deleterious(0.03) benign(0.24) TCGA-CA-6717-01 16 70817441 70817441 G A VAC14 Missense_Mutation p.S204L 0.18 deleterious(0.01) possibly_damaging(0.656) TCGA-CA-6717-01 16 70841711 70841711 G T HYDIN Missense_Mutation p.F5046L 0.12 possibly_damaging(0.682) TCGA-CA-6717-01 16 70926271 70926271 C T HYDIN Missense_Mutation p.R3137H 0.08 benign(0) TCGA-CA-6717-01 16 70942696 70942696 G T HYDIN Silent p.V2691V 0.23 TCGA-CA-6717-01 16 70955004 70955004 G A HYDIN Silent p.G2425G 0.17 TCGA-CA-6717-01 16 711107 711107 G A WDR90 Missense_Mutation p.A1150T 0.10 tolerated(0.22) benign(0.05) TCGA-CA-6717-01 16 71509257 71509257 C A ZNF19 Missense_Mutation p.R398I 0.21 deleterious(0.04) benign(0.005) TCGA-CA-6717-01 16 71571459 71571459 C T CHST4 Silent p.F293F 0.12 TCGA-CA-6717-01 16 71572275 71572275 C A CHST4 3'UTR 0.19 TCGA-CA-6717-01 16 71606508 71606508 A G TAT Silent p.V164V 0.16 TCGA-CA-6717-01 16 71773211 71773211 A G AP1G1 Missense_Mutation p.V681A 0.14 tolerated(0.45) benign(0.004) TCGA-CA-6717-01 16 71795428 71795428 C A AP1G1 Missense_Mutation p.D324Y 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 71823330 71823330 C T AP1G1 Missense_Mutation p.R18Q 0.21 deleterious(0.02) probably_damaging(0.931) TCGA-CA-6717-01 16 71887841 71887841 C A ATXN1L 3'UTR 0.23 TCGA-CA-6717-01 16 72057108 72057108 C T DHODH Silent p.R288R 0.16 TCGA-CA-6717-01 16 72090144 72090144 T C HP Splice_Site p.X30_splice 0.18 TCGA-CA-6717-01 16 72110287 72110287 G T HPR Missense_Mutation p.Q118H 0.24 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 16 72130346 72130346 G A DHX38 Missense_Mutation p.G97D 0.10 tolerated(0.61) benign(0.003) TCGA-CA-6717-01 16 72198797 72198797 C A PMFBP1 Nonsense_Mutation p.E11* 0.23 TCGA-CA-6717-01 16 72993161 72993161 C T ZFHX3 Missense_Mutation p.R295H 0.23 probably_damaging(0.964) TCGA-CA-6717-01 16 74425716 74425716 A C NPIPB15 Missense_Mutation p.K357T 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CA-6717-01 16 74505168 74505168 T C GLG1 Missense_Mutation p.Q711R 0.10 tolerated(0.12) benign(0.039) TCGA-CA-6717-01 16 75258673 75258673 G A CTRB1 Missense_Mutation p.G234D 0.20 deleterious(0.02) benign(0.38) TCGA-CA-6717-01 16 75611211 75611211 G T GABARAPL2 Missense_Mutation p.D100Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 16 75634185 75634185 A G ADAT1 Missense_Mutation p.W480R 0.19 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 16 76483687 76483687 A C CNTNAP4 Intron 0.13 TCGA-CA-6717-01 16 76486447 76486447 G T CNTNAP4 Missense_Mutation p.V299L 0.08 tolerated(0.06) benign(0.081) TCGA-CA-6717-01 16 76486526 76486526 T G CNTNAP4 Missense_Mutation p.F325C 0.10 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 16 76528914 76528914 T G CNTNAP4 Missense_Mutation p.C657G 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 16 77232018 77232018 T G MON1B Missense_Mutation p.F486C 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 16 77232019 77232019 C T MON1B Silent p.F486F 0.21 TCGA-CA-6717-01 16 7726825 7726825 C T RBFOX1 Missense_Mutation p.A348V 0.10 tolerated(0.06) benign(0.366) TCGA-CA-6717-01 16 77359795 77359795 A C ADAMTS18 Missense_Mutation p.F667C 0.24 deleterious(0) possibly_damaging(0.447) TCGA-CA-6717-01 16 77401342 77401342 C A ADAMTS18 Missense_Mutation p.K258N 0.11 deleterious(0.04) benign(0.167) TCGA-CA-6717-01 16 77401568 77401568 T G ADAMTS18 Missense_Mutation p.Q183P 0.26 tolerated(0.41) benign(0.004) TCGA-CA-6717-01 16 7760739 7760739 C T RBFOX1 Missense_Mutation p.P417S 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 16 7760755 7760755 A T RBFOX1 3'UTR 0.11 TCGA-CA-6717-01 16 77759328 77759328 A C NUDT7 Missense_Mutation p.R12S 0.13 deleterious(0.03) benign(0.086) TCGA-CA-6717-01 16 77769875 77769875 C T NUDT7 Missense_Mutation p.L114F 0.12 tolerated(0.09) benign(0.111) TCGA-CA-6717-01 16 78011657 78011657 C T VAT1L 3'UTR 0.15 TCGA-CA-6717-01 16 78064821 78064821 T G CLEC3A 3'UTR 0.21 TCGA-CA-6717-01 16 78420812 78420812 A C WWOX Missense_Mutation p.Q191P 0.11 deleterious(0.03) possibly_damaging(0.699) TCGA-CA-6717-01 16 80718446 80718446 T C CDYL2 Missense_Mutation p.E202G 0.24 tolerated(0.34) benign(0.014) TCGA-CA-6717-01 16 81062337 81062337 C A CENPN Intron 0.11 TCGA-CA-6717-01 16 81293315 81293315 C T BCMO1 Silent p.S76S 0.11 TCGA-CA-6717-01 16 81902896 81902896 A C PLCG2 Missense_Mutation p.K186T 0.17 tolerated(0.13) benign(0.193) TCGA-CA-6717-01 16 82069118 82069118 G A HSD17B2 Missense_Mutation p.S30N 0.09 tolerated(0.12) benign(0.02) TCGA-CA-6717-01 16 84209638 84209638 A G DNAAF1 Missense_Mutation p.T600A 0.12 tolerated(0.25) benign(0.002) TCGA-CA-6717-01 16 84255867 84255867 C A KCNG4 Missense_Mutation p.D506Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-CA-6717-01 16 84812831 84812831 T G USP10 3'UTR 0.33 TCGA-CA-6717-01 16 84884257 84884257 C T CRISPLD2 Silent p.N192N 0.11 TCGA-CA-6717-01 16 855739 855739 G A PRR25 Silent p.P99P 0.13 TCGA-CA-6717-01 16 85689956 85689956 A C GSE1 Missense_Mutation p.M333L 0.30 tolerated(0.28) unknown(0) TCGA-CA-6717-01 16 85715242 85715242 A C GINS2 Missense_Mutation p.F84C 0.07 deleterious(0.04) probably_damaging(1) TCGA-CA-6717-01 16 85822588 85822588 C A EMC8 Missense_Mutation p.K100N 0.23 tolerated(0.12) benign(0.014) TCGA-CA-6717-01 16 86602438 86602438 G A FOXC2 Silent p.T499T 0.13 TCGA-CA-6717-01 16 86613989 86613989 T G FOXL1 3'UTR 0.10 TCGA-CA-6717-01 16 86614229 86614229 G A FOXL1 3'UTR 0.24 TCGA-CA-6717-01 16 8722602 8722602 T C METTL22 Missense_Mutation p.F50S 0.17 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 16 87874733 87874733 G T SLC7A5 Missense_Mutation p.F231L 0.25 tolerated(0.64) benign(0.002) TCGA-CA-6717-01 16 88499777 88499777 C A ZNF469 Missense_Mutation p.L1939I 0.27 benign(0.118) TCGA-CA-6717-01 16 89349417 89349417 T C ANKRD11 Missense_Mutation p.D1178G 0.24 possibly_damaging(0.505) TCGA-CA-6717-01 16 89349749 89349749 T G ANKRD11 Missense_Mutation p.K1067N 0.11 probably_damaging(0.996) TCGA-CA-6717-01 16 89350173 89350173 T G ANKRD11 Missense_Mutation p.K926T 0.15 possibly_damaging(0.905) TCGA-CA-6717-01 16 89774906 89774906 G A VPS9D1 Silent p.F577F 0.09 TCGA-CA-6717-01 16 89775660 89775660 G A VPS9D1 Silent p.C524C 0.11 TCGA-CA-6717-01 16 89785527 89785527 G T VPS9D1 Intron 0.19 TCGA-CA-6717-01 16 89807265 89807265 A C FANCA Missense_Mutation p.F1259V 0.14 tolerated(0.69) possibly_damaging(0.637) TCGA-CA-6717-01 16 89833627 89833627 A C FANCA Missense_Mutation p.I841M 0.15 deleterious(0) benign(0.308) TCGA-CA-6717-01 16 8989007 8989007 C A USP7 Nonsense_Mutation p.E974* 0.15 TCGA-CA-6717-01 16 90128383 90128383 A C PRDM7 Nonsense_Mutation p.Y276* 0.12 TCGA-CA-6717-01 16 90162260 90162260 A C TUBB8P7 RNA 0.09 TCGA-CA-6717-01 16 920743 920743 G A LMF1 Silent p.Y406Y 0.42 TCGA-CA-6717-01 16 9923474 9923474 T C GRIN2A Missense_Mutation p.I605V 0.12 tolerated(0.86) benign(0.009) TCGA-CA-6717-01 16 9927982 9927982 C A GRIN2A Missense_Mutation p.R586I 0.16 deleterious(0) possibly_damaging(0.655) TCGA-CA-6717-01 16 9984925 9984925 T G GRIN2A Missense_Mutation p.D347A 0.20 deleterious(0.01) benign(0.352) TCGA-CA-6717-01 17 10210356 10210356 T C MYH13 Missense_Mutation p.K1732R 0.10 tolerated(0.25) benign(0.435) TCGA-CA-6717-01 17 10215999 10215999 C A MYH13 Missense_Mutation p.E1419D 0.11 deleterious(0.05) probably_damaging(0.992) TCGA-CA-6717-01 17 10225020 10225020 C A MYH13 Missense_Mutation p.K980N 0.19 deleterious(0.01) benign(0.343) TCGA-CA-6717-01 17 10265802 10265802 C A MYH13 Missense_Mutation p.D75Y 0.20 deleterious(0) possibly_damaging(0.723) TCGA-CA-6717-01 17 10293650 10293650 C T MYH8 3'UTR 0.18 TCGA-CA-6717-01 17 10293855 10293855 C A MYH8 Missense_Mutation p.E1910D 0.25 deleterious(0.03) benign(0.11) TCGA-CA-6717-01 17 10295896 10295896 C T MYH8 Missense_Mutation p.R1844Q 0.13 deleterious(0) probably_damaging(0.923) TCGA-CA-6717-01 17 10298536 10298536 T C MYH8 Missense_Mutation p.N1626D 0.14 deleterious(0.02) benign(0.097) TCGA-CA-6717-01 17 10304272 10304272 C A MYH8 Nonsense_Mutation p.E1087* 0.15 TCGA-CA-6717-01 17 10304962 10304962 C A MYH8 Missense_Mutation p.K943N 0.27 deleterious(0) benign(0.102) TCGA-CA-6717-01 17 10307901 10307901 C A MYH8 Nonsense_Mutation p.E812* 0.33 TCGA-CA-6717-01 17 10309421 10309421 C A MYH8 Missense_Mutation p.R790I 0.11 tolerated(0.14) benign(0.361) TCGA-CA-6717-01 17 10317322 10317322 C A MYH8 Missense_Mutation p.E348D 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 10351167 10351167 T G MYH4 Silent p.R1645R 0.10 TCGA-CA-6717-01 17 10352085 10352085 T C MYH4 Missense_Mutation p.K1461E 0.14 deleterious(0) possibly_damaging(0.868) TCGA-CA-6717-01 17 10356625 10356625 C T MYH4 Silent p.E985E 0.10 TCGA-CA-6717-01 17 10357988 10357988 C A MYH4 Nonsense_Mutation p.E859* 0.10 TCGA-CA-6717-01 17 10367997 10367997 C T MYH4 Splice_Site p.X178_splice 0.22 TCGA-CA-6717-01 17 10370065 10370065 C T MYH4 5'UTR 0.32 TCGA-CA-6717-01 17 10399358 10399358 C T MYH1 Missense_Mutation p.R1693Q 0.26 deleterious(0.03) benign(0.034) TCGA-CA-6717-01 17 10401119 10401119 T G MYH1 Missense_Mutation p.M1433L 0.32 tolerated(0.21) benign(0.189) TCGA-CA-6717-01 17 10402330 10402330 C A MYH1 Missense_Mutation p.Q1315H 0.13 deleterious(0.01) probably_damaging(0.971) TCGA-CA-6717-01 17 10404471 10404471 T C MYH1 Missense_Mutation p.I1232V 0.12 tolerated(0.53) benign(0.007) TCGA-CA-6717-01 17 10408782 10408782 C T MYH1 Missense_Mutation p.D741N 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 17 10426880 10426880 C T MYH2 Missense_Mutation p.R1802H 0.11 deleterious(0.01) benign(0.079) TCGA-CA-6717-01 17 10433254 10433254 C A MYH2 Missense_Mutation p.K945N 0.20 deleterious(0.02) benign(0.367) TCGA-CA-6717-01 17 10436847 10436847 C A MYH2 Missense_Mutation p.Q761H 0.19 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 17 10535890 10535890 T C MYH3 Missense_Mutation p.E1620G 0.12 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 17 10590091 10590091 T G SCO1 Silent p.R242R 0.10 TCGA-CA-6717-01 17 11593658 11593658 G A DNAH9 Missense_Mutation p.A1507T 0.16 benign(0.002) TCGA-CA-6717-01 17 11696969 11696969 G T DNAH9 Missense_Mutation p.K2737N 0.21 benign(0.033) TCGA-CA-6717-01 17 11726307 11726307 C T DNAH9 Missense_Mutation p.R3068W 0.14 probably_damaging(0.999) TCGA-CA-6717-01 17 11757611 11757611 T C DNAH9 Missense_Mutation p.S3267P 0.12 probably_damaging(0.936) TCGA-CA-6717-01 17 11808993 11808993 G T DNAH9 Missense_Mutation p.E3872D 0.14 benign(0.12) TCGA-CA-6717-01 17 11840731 11840731 G T DNAH9 Missense_Mutation p.E4184D 0.08 probably_damaging(0.941) TCGA-CA-6717-01 17 11872690 11872690 C A DNAH9 Missense_Mutation p.P4436H 0.13 benign(0.424) TCGA-CA-6717-01 17 1264590 1264590 T G YWHAE Missense_Mutation p.K125T 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CA-6717-01 17 12859194 12859194 A C ARHGAP44 Missense_Mutation p.K383Q 0.11 tolerated(0.05) possibly_damaging(0.771) TCGA-CA-6717-01 17 13977768 13977768 C T COX10 Missense_Mutation p.R58C 0.09 deleterious_low_confidence(0.04) benign(0.052) TCGA-CA-6717-01 17 14139320 14139320 C T CDRT15 Silent p.P140P 0.14 TCGA-CA-6717-01 17 14205223 14205223 A G HS3ST3B1 Missense_Mutation p.S130G 0.12 tolerated(0.18) benign(0) TCGA-CA-6717-01 17 14248598 14248598 G A HS3ST3B1 Missense_Mutation p.A270T 0.16 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 17 14683328 14683328 C T AC005863.1 RNA 0.08 TCGA-CA-6717-01 17 14683341 14683341 C A AC005863.1 RNA 0.10 TCGA-CA-6717-01 17 15234468 15234468 A G TEKT3 Silent p.N145N 0.08 TCGA-CA-6717-01 17 15234556 15234556 T G TEKT3 Missense_Mutation p.N116T 0.19 tolerated(0.77) possibly_damaging(0.515) TCGA-CA-6717-01 17 15492514 15492514 A G CDRT1 Silent p.F678F 0.16 TCGA-CA-6717-01 17 15501935 15501935 C A RP11-385D13.1 Missense_Mutation p.R799L 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CA-6717-01 17 15604510 15604510 G A ZNF286A Missense_Mutation p.E28K 0.11 tolerated(0.12) benign(0.024) TCGA-CA-6717-01 17 15620327 15620327 G T ZNF286A Missense_Mutation p.R430I 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 17 15620457 15620457 A T ZNF286A Missense_Mutation p.K473N 0.13 deleterious(0.03) probably_damaging(0.978) TCGA-CA-6717-01 17 1563829 1563829 A G PRPF8 Missense_Mutation p.F1561S 0.08 deleterious(0) possibly_damaging(0.578) TCGA-CA-6717-01 17 16001704 16001704 G A NCOR1 Nonsense_Mutation p.R933* 0.27 TCGA-CA-6717-01 17 16024379 16024379 C T NCOR1 Silent p.P613P 0.12 TCGA-CA-6717-01 17 16040688 16040688 C A NCOR1 Missense_Mutation p.K482N 0.13 possibly_damaging(0.862) TCGA-CA-6717-01 17 16042408 16042408 C T NCOR1 Silent p.G422G 0.08 TCGA-CA-6717-01 17 16097940 16097940 T G NCOR1 5'UTR 0.16 TCGA-CA-6717-01 17 16455156 16455156 G T ZNF287 3'UTR 0.13 TCGA-CA-6717-01 17 16456296 16456296 T C ZNF287 Missense_Mutation p.Q387R 0.16 tolerated(0.29) benign(0.001) TCGA-CA-6717-01 17 16466480 16466480 A C ZNF287 Missense_Mutation p.I232S 0.19 tolerated(0.08) possibly_damaging(0.504) TCGA-CA-6717-01 17 16470714 16470714 G A ZNF287 Missense_Mutation p.S111F 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6717-01 17 1649012 1649012 G A SERPINF2 Missense_Mutation p.G59D 0.17 tolerated(0.22) benign(0.014) TCGA-CA-6717-01 17 16525863 16525863 G A ZNF624 Silent p.P779P 0.08 TCGA-CA-6717-01 17 16526029 16526029 A C ZNF624 Missense_Mutation p.F724C 0.15 deleterious(0) probably_damaging(0.923) TCGA-CA-6717-01 17 16526825 16526825 A C ZNF624 Missense_Mutation p.F459V 0.21 deleterious(0.02) probably_damaging(0.992) TCGA-CA-6717-01 17 16612293 16612293 A C CCDC144A Missense_Mutation p.K308Q 0.07 tolerated(0.17) benign(0.041) TCGA-CA-6717-01 17 16612842 16612842 C A CCDC144A Missense_Mutation p.L491I 0.17 tolerated(0.06) benign(0.005) TCGA-CA-6717-01 17 16612907 16612907 G T CCDC144A Missense_Mutation p.E512D 0.06 tolerated(0.25) benign(0) TCGA-CA-6717-01 17 16612919 16612919 G A CCDC144A Silent p.L516L 0.21 TCGA-CA-6717-01 17 16635870 16635870 G T CCDC144A Missense_Mutation p.D770Y 0.07 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 17 16667535 16667535 C A CCDC144A Intron 0.12 TCGA-CA-6717-01 17 1680675 1680675 C T SERPINF1 Silent p.L398L 0.08 TCGA-CA-6717-01 17 17165329 17165329 A G COPS3 Missense_Mutation p.V238A 0.11 tolerated(0.06) possibly_damaging(0.7) TCGA-CA-6717-01 17 17209877 17209877 G T NT5M Missense_Mutation p.W96C 0.31 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 17 17250226 17250226 T G NT5M Missense_Mutation p.W218G 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 17 17409610 17409610 G A PEMT Missense_Mutation p.A195V 0.12 deleterious(0.01) benign(0.328) TCGA-CA-6717-01 17 17722327 17722327 C T SREBF1 Silent p.K386K 0.20 TCGA-CA-6717-01 17 18022138 18022138 G A MYO15A Silent p.E8E 0.15 TCGA-CA-6717-01 17 18058443 18058443 A G MYO15A Silent p.T2748T 0.14 TCGA-CA-6717-01 17 18059589 18059589 T C MYO15A Missense_Mutation p.F2847S 0.15 unknown(0) TCGA-CA-6717-01 17 18065945 18065945 C T MYO15A Silent p.F3188F 0.17 TCGA-CA-6717-01 17 18429128 18429128 T G FAM106A 3'UTR 0.16 TCGA-CA-6717-01 17 18565359 18565359 C A ZNF286B Missense_Mutation p.R487I 0.18 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 17 18565807 18565807 G A ZNF286B Nonsense_Mutation p.R338* 0.18 TCGA-CA-6717-01 17 18565944 18565944 C A ZNF286B Missense_Mutation p.R292I 0.19 deleterious(0) probably_damaging(0.937) TCGA-CA-6717-01 17 18566326 18566326 T G ZNF286B Missense_Mutation p.K165Q 0.07 tolerated(0.29) benign(0.03) TCGA-CA-6717-01 17 18648058 18648058 C T FBXW10 Silent p.I167I 0.15 TCGA-CA-6717-01 17 18653232 18653232 C A FBXW10 Missense_Mutation p.L290I 0.15 deleterious(0) probably_damaging(0.972) TCGA-CA-6717-01 17 18668087 18668087 G T FBXW10 Missense_Mutation p.R489L 0.09 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 17 18668094 18668094 C T FBXW10 Silent p.F491F 0.16 TCGA-CA-6717-01 17 18678497 18678497 G A FBXW10 Missense_Mutation p.R776Q 0.20 tolerated(0.35) benign(0.002) TCGA-CA-6717-01 17 18681838 18681838 A G FBXW10 Missense_Mutation p.K796E 0.06 tolerated(1) benign(0) TCGA-CA-6717-01 17 19284109 19284109 T C MAPK7 Missense_Mutation p.L196P 0.09 deleterious(0) probably_damaging(0.968) TCGA-CA-6717-01 17 19480671 19480671 G A SLC47A1 Silent p.T506T 0.14 TCGA-CA-6717-01 17 19708067 19708067 G A ULK2 Missense_Mutation p.R412C 0.19 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 17 20107833 20107833 G T SPECC1 Missense_Mutation p.E157D 0.15 tolerated(1) benign(0.02) TCGA-CA-6717-01 17 20361514 20361514 C T LGALS9B Silent p.V105V 0.06 TCGA-CA-6717-01 17 2076010 2076010 A G SMG6 Missense_Mutation p.F1100S 0.22 deleterious(0) probably_damaging(0.915) TCGA-CA-6717-01 17 20922488 20922488 C A USP22 Missense_Mutation p.E143D 0.18 tolerated(0.25) benign(0.002) TCGA-CA-6717-01 17 20924446 20924446 C T USP22 Missense_Mutation p.R133Q 0.14 tolerated(0.5) benign(0.007) TCGA-CA-6717-01 17 21731109 21731109 C T UBBP4 Silent p.I137I 0.20 TCGA-CA-6717-01 17 2202432 2202432 A G SMG6 Missense_Mutation p.Y539H 0.16 deleterious(0.01) possibly_damaging(0.903) TCGA-CA-6717-01 17 2237840 2237840 C A TSR1 Missense_Mutation p.D303Y 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 17 2541403 2541403 T C PAFAH1B1 5'UTR 0.29 TCGA-CA-6717-01 17 25630635 25630635 G A WSB1 Missense_Mutation p.R151H 0.20 tolerated(0.12) probably_damaging(0.994) TCGA-CA-6717-01 17 25630642 25630642 A G WSB1 Silent p.K153K 0.11 TCGA-CA-6717-01 17 26099449 26099449 C T NOS2 Missense_Mutation p.R530H 0.12 tolerated(0.12) benign(0.017) TCGA-CA-6717-01 17 26114813 26114813 T G NOS2 Missense_Mutation p.M120L 0.10 deleterious(0.02) probably_damaging(0.929) TCGA-CA-6717-01 17 263819 263819 G A C17orf97 Silent p.S395S 0.09 TCGA-CA-6717-01 17 26685982 26685982 C A TMEM199 Silent p.I85I 0.44 TCGA-CA-6717-01 17 26691654 26691654 C T VTN 3'Flank 0.20 TCGA-CA-6717-01 17 26696685 26696685 C T VTN Silent p.A124A 0.21 TCGA-CA-6717-01 17 26722980 26722980 C T SARM1 Silent p.F626F 0.16 TCGA-CA-6717-01 17 26800677 26800677 C T SLC13A2 5'UTR 0.22 TCGA-CA-6717-01 17 26824180 26824180 T G SLC13A2 Missense_Mutation p.W607G 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 17 26906387 26906387 T A SPAG5 Nonsense_Mutation p.K1001* 0.14 TCGA-CA-6717-01 17 26913013 26913013 G A SPAG5 Missense_Mutation p.R537W 0.23 tolerated(0.1) benign(0.006) TCGA-CA-6717-01 17 26919892 26919892 T C SPAG5 Missense_Mutation p.N124D 0.08 tolerated_low_confidence(1) benign(0.008) TCGA-CA-6717-01 17 26940352 26940352 G A SGK494 Silent p.L112L 0.13 TCGA-CA-6717-01 17 27024643 27024643 C T SUPT6H Silent p.F1405F 0.12 TCGA-CA-6717-01 17 27041904 27041904 C A RAB34 Nonsense_Mutation p.E264* 0.21 TCGA-CA-6717-01 17 27614372 27614372 A C NUFIP2 Missense_Mutation p.S214A 0.21 deleterious(0.01) benign(0.269) TCGA-CA-6717-01 17 27861259 27861259 C T TAOK1 Nonsense_Mutation p.R829* 0.09 TCGA-CA-6717-01 17 27946132 27946132 G A CORO6 Missense_Mutation p.R133C 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 27959512 27959512 G A SSH2 Silent p.F873F 0.20 TCGA-CA-6717-01 17 27977745 27977745 G A SSH2 Missense_Mutation p.R358W 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 17 28361324 28361324 A C EFCAB5 Missense_Mutation p.D374A 0.24 tolerated(0.11) benign(0.117) TCGA-CA-6717-01 17 28378220 28378220 C T EFCAB5 Nonsense_Mutation p.R429* 0.27 TCGA-CA-6717-01 17 28417478 28417478 T C EFCAB5 Silent p.V1241V 0.12 TCGA-CA-6717-01 17 28419058 28419058 T G EFCAB5 Silent p.S1369S 0.09 TCGA-CA-6717-01 17 28434913 28434913 G A EFCAB5 Nonsense_Mutation p.W1461* 0.21 TCGA-CA-6717-01 17 28506202 28506202 T C NSRP1 Missense_Mutation p.M132T 0.09 tolerated(0.09) benign(0.022) TCGA-CA-6717-01 17 28549915 28549915 C T SLC6A4 Intron 0.36 TCGA-CA-6717-01 17 28644209 28644209 A G TMIGD1 Splice_Site p.X262_splice 0.10 TCGA-CA-6717-01 17 28749898 28749898 A C CPD Missense_Mutation p.H505P 0.17 deleterious(0.05) possibly_damaging(0.616) TCGA-CA-6717-01 17 28811690 28811690 G A GOSR1 Missense_Mutation p.V84I 0.09 tolerated(0.46) benign(0.004) TCGA-CA-6717-01 17 28960359 28960359 T G LRRC37BP1 RNA 0.19 TCGA-CA-6717-01 17 28961131 28961131 T G LRRC37BP1 RNA 0.23 TCGA-CA-6717-01 17 28964447 28964447 T G LRRC37BP1 RNA 0.13 TCGA-CA-6717-01 17 29061799 29061799 A C CTD-2349P21.5 3'Flank 0.09 TCGA-CA-6717-01 17 29204446 29204446 C A ATAD5 Missense_Mutation p.S1266Y 0.08 deleterious(0.01) benign(0.439) TCGA-CA-6717-01 17 29220454 29220454 T G ATAD5 Missense_Mutation p.F1528C 0.15 tolerated(0.13) benign(0.375) TCGA-CA-6717-01 17 29221688 29221688 C T ATAD5 Nonsense_Mutation p.R1802* 0.25 TCGA-CA-6717-01 17 29645543 29645543 G T EVI2A Silent p.V186V 0.17 TCGA-CA-6717-01 17 29654805 29654805 A G NF1 Missense_Mutation p.T1853A 0.12 deleterious(0) probably_damaging(0.952) TCGA-CA-6717-01 17 29844820 29844820 A G RAB11FIP4 Missense_Mutation p.Q163R 0.17 tolerated(0.75) benign(0.003) TCGA-CA-6717-01 17 2995903 2995903 G T OR1D2 Missense_Mutation p.L130I 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 30190415 30190415 A G UTP6 Missense_Mutation p.V586A 0.09 deleterious(0) possibly_damaging(0.507) TCGA-CA-6717-01 17 3030518 3030518 G T OR1G1 Missense_Mutation p.L110M 0.17 tolerated(0.51) possibly_damaging(0.605) TCGA-CA-6717-01 17 30351798 30351798 A C LRRC37B Missense_Mutation p.K583T 0.21 deleterious(0.03) possibly_damaging(0.727) TCGA-CA-6717-01 17 30376270 30376270 C T LRRC37B Nonsense_Mutation p.R845* 0.17 TCGA-CA-6717-01 17 30509870 30509870 G T RHOT1 Nonsense_Mutation p.E142* 0.10 TCGA-CA-6717-01 17 30621318 30621319 - T RHBDL3 Frame_Shift_Ins p.L178Pfs*92 0.09 TCGA-CA-6717-01 17 30666891 30666891 C T C17orf75 Silent p.K96K 0.10 TCGA-CA-6717-01 17 3101031 3101031 C A OR1A2 Missense_Mutation p.F73L 0.11 tolerated(0.08) benign(0.02) TCGA-CA-6717-01 17 3101177 3101177 G A OR1A2 Missense_Mutation p.R122Q 0.11 deleterious(0) possibly_damaging(0.709) TCGA-CA-6717-01 17 31075981 31075981 C T MYO1D Missense_Mutation p.R504Q 0.17 tolerated(0.05) possibly_damaging(0.611) TCGA-CA-6717-01 17 31103039 31103039 T G MYO1D Missense_Mutation p.N136T 0.13 deleterious(0.03) possibly_damaging(0.734) TCGA-CA-6717-01 17 3119131 3119131 T G OR1A1 Missense_Mutation p.F73V 0.20 deleterious(0) benign(0.371) TCGA-CA-6717-01 17 3181998 3181998 G A OR3A2 Silent p.L78L 0.09 TCGA-CA-6717-01 17 3195188 3195188 C T OR3A1 Missense_Mutation p.R230Q 0.12 tolerated(0.08) benign(0.076) TCGA-CA-6717-01 17 32583931 32583931 G A CCL2 3'UTR 0.31 TCGA-CA-6717-01 17 32614609 32614609 A C CCL11 Missense_Mutation p.K65T 0.10 tolerated(0.07) benign(0.05) TCGA-CA-6717-01 17 32904579 32904579 T C C17orf102 Silent p.K157K 0.18 TCGA-CA-6717-01 17 3300947 3300947 C A OR1E1 Missense_Mutation p.G253V 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 17 3301678 3301678 G T OR1E1 Silent p.I9I 0.13 TCGA-CA-6717-01 17 3323928 3323928 C A OR3A3 Missense_Mutation p.L23I 0.11 deleterious(0.01) benign(0.373) TCGA-CA-6717-01 17 3343431 3343431 T G SPATA22 3'UTR 0.09 TCGA-CA-6717-01 17 33482349 33482349 G A UNC45B Missense_Mutation p.R225Q 0.20 tolerated(0.29) benign(0.004) TCGA-CA-6717-01 17 33510460 33510460 C A UNC45B Missense_Mutation p.F798L 0.22 deleterious(0.03) benign(0.04) TCGA-CA-6717-01 17 33513537 33513537 A G UNC45B Missense_Mutation p.I919V 0.16 tolerated(0.3) benign(0) TCGA-CA-6717-01 17 33586455 33586455 C T SLFN5 Missense_Mutation p.T249M 0.09 tolerated(0.12) benign(0.075) TCGA-CA-6717-01 17 33679887 33679887 G A SLFN11 Missense_Mutation p.R732C 0.23 deleterious(0.01) benign(0.366) TCGA-CA-6717-01 17 33690347 33690347 G T SLFN11 Silent p.I160I 0.23 TCGA-CA-6717-01 17 33749350 33749350 T C SLFN12 Missense_Mutation p.D233G 0.13 tolerated(0.09) possibly_damaging(0.782) TCGA-CA-6717-01 17 33767569 33767569 A T SLFN13 3'UTR 0.15 TCGA-CA-6717-01 17 33767695 33767695 C T SLFN13 Silent p.R871R 0.26 TCGA-CA-6717-01 17 33767806 33767806 C A SLFN13 Missense_Mutation p.M834I 0.08 tolerated(0.44) benign(0.003) TCGA-CA-6717-01 17 33772215 33772215 T G SLFN13 Missense_Mutation p.K162T 0.12 tolerated(0.38) benign(0.372) TCGA-CA-6717-01 17 33772633 33772633 C A SLFN13 Nonsense_Mutation p.E23* 0.10 TCGA-CA-6717-01 17 33802020 33802020 C A SLFN12L Missense_Mutation p.E563D 0.11 tolerated_low_confidence(0.38) benign(0.007) TCGA-CA-6717-01 17 33806170 33806170 C A SLFN12L Missense_Mutation p.K353N 0.12 tolerated(0.13) benign(0.021) TCGA-CA-6717-01 17 33849440 33849440 C A SLFN12L 5'UTR 0.22 TCGA-CA-6717-01 17 33875823 33875823 C T SLFN14 Missense_Mutation p.R725Q 0.24 deleterious(0.03) benign(0.22) TCGA-CA-6717-01 17 33879760 33879760 C A SLFN14 Missense_Mutation p.K631N 0.24 deleterious(0) benign(0.398) TCGA-CA-6717-01 17 33903059 33903059 C A PEX12 Missense_Mutation p.K274N 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6717-01 17 33954701 33954701 C T AP2B1 Nonsense_Mutation p.R371* 0.14 TCGA-CA-6717-01 17 34149754 34149754 A C TAF15 Missense_Mutation p.N134T 0.10 tolerated_low_confidence(0.06) benign(0.024) TCGA-CA-6717-01 17 34191535 34191535 G T C17orf66 Missense_Mutation p.S159Y 0.18 deleterious(0) probably_damaging(0.955) TCGA-CA-6717-01 17 34251647 34251647 T C RDM1 Missense_Mutation p.I177V 0.15 tolerated(1) benign(0.001) TCGA-CA-6717-01 17 34305212 34305212 C A CCL16 Missense_Mutation p.R55I 0.08 tolerated(0.19) benign(0.081) TCGA-CA-6717-01 17 34432645 34432645 C T CCL4 Silent p.V73V 0.10 TCGA-CA-6717-01 17 34854831 34854831 G A ZNHIT3 3'Flank 0.31 TCGA-CA-6717-01 17 34893344 34893344 T G PIGW Missense_Mutation p.F132V 0.09 deleterious(0) possibly_damaging(0.461) TCGA-CA-6717-01 17 3539434 3539434 T C SHPK Missense_Mutation p.D27G 0.17 tolerated(1) benign(0) TCGA-CA-6717-01 17 35563789 35563789 A C ACACA Missense_Mutation p.F1286V 0.12 deleterious(0.05) benign(0.057) TCGA-CA-6717-01 17 35583271 35583271 G A ACACA Nonsense_Mutation p.R1117* 0.21 TCGA-CA-6717-01 17 35981514 35981514 C A DDX52 Nonsense_Mutation p.E427* 0.12 TCGA-CA-6717-01 17 36454531 36454531 G A MRPL45 Silent p.R61R 0.13 TCGA-CA-6717-01 17 36478050 36478050 A G MRPL45 Silent p.G234G 0.21 TCGA-CA-6717-01 17 36483849 36483849 T C GPR179 Missense_Mutation p.Q1868R 0.15 tolerated(0.09) benign(0.03) TCGA-CA-6717-01 17 36483996 36483996 G A GPR179 Missense_Mutation p.P1819L 0.20 deleterious(0.03) possibly_damaging(0.856) TCGA-CA-6717-01 17 36485792 36485792 G A GPR179 Silent p.V1220V 0.24 TCGA-CA-6717-01 17 3657171 3657171 G A ITGAE Missense_Mutation p.A478V 0.29 tolerated(0.14) benign(0.341) TCGA-CA-6717-01 17 36720474 36720474 C T SRCIN1 Missense_Mutation p.A141T 0.15 tolerated(0.05) possibly_damaging(0.765) TCGA-CA-6717-01 17 37368557 37368557 C T STAC2 Silent p.L408L 0.17 TCGA-CA-6717-01 17 37374364 37374364 G T STAC2 Missense_Mutation p.N51K 0.15 deleterious(0) possibly_damaging(0.662) TCGA-CA-6717-01 17 37420478 37420478 C A FBXL20 Nonsense_Mutation p.E385* 0.14 TCGA-CA-6717-01 17 37565862 37565862 T C MED1 Missense_Mutation p.N871S 0.10 tolerated_low_confidence(0.12) benign(0.1) TCGA-CA-6717-01 17 37575987 37575987 C A MED1 Missense_Mutation p.R427I 0.33 deleterious(0) probably_damaging(0.972) TCGA-CA-6717-01 17 37618593 37618593 A G CDK12 Missense_Mutation p.K90R 0.11 unknown(0) TCGA-CA-6717-01 17 37761785 37761785 C A NEUROD2 Missense_Mutation p.E356D 0.25 tolerated(0.41) probably_damaging(0.978) TCGA-CA-6717-01 17 37815767 37815767 C A STARD3 Silent p.I252I 0.18 TCGA-CA-6717-01 17 37819126 37819126 C T STARD3 Nonsense_Mutation p.R435* 0.20 TCGA-CA-6717-01 17 37866663 37866663 A G ERBB2 Missense_Mutation p.D277G 0.10 tolerated(0.15) benign(0.017) TCGA-CA-6717-01 17 37922100 37922100 A G IKZF3 Silent p.D491D 0.17 TCGA-CA-6717-01 17 37949026 37949026 G A IKZF3 Silent p.F108F 0.17 TCGA-CA-6717-01 17 38026961 38026961 G T ZPBP2 Nonsense_Mutation p.E45* 0.13 TCGA-CA-6717-01 17 38028566 38028566 T G ZPBP2 Missense_Mutation p.F150L 0.20 deleterious(0.03) probably_damaging(0.951) TCGA-CA-6717-01 17 38184200 38184200 C A MED24 Splice_Site p.X470_splice 0.17 TCGA-CA-6717-01 17 38251334 38251334 G A NR1D1 Nonsense_Mutation p.R430* 0.16 TCGA-CA-6717-01 17 38447517 38447517 A G CDC6 Missense_Mutation p.E129G 0.12 deleterious(0.05) benign(0.007) TCGA-CA-6717-01 17 38508189 38508189 A C RARA Missense_Mutation p.K166T 0.10 deleterious(0.05) possibly_damaging(0.776) TCGA-CA-6717-01 17 38572690 38572690 G T TOP2A Silent p.I84I 0.08 TCGA-CA-6717-01 17 38644890 38644890 C A TNS4 Missense_Mutation p.E257D 0.13 tolerated(0.42) benign(0.025) TCGA-CA-6717-01 17 38904606 38904606 G T KRT25 Missense_Mutation p.L426I 0.19 tolerated(0.22) benign(0.02) TCGA-CA-6717-01 17 38906779 38906779 G A KRT25 Missense_Mutation p.A343V 0.12 tolerated(0.28) probably_damaging(0.976) TCGA-CA-6717-01 17 38948635 38948635 G T KRT28 3'UTR 0.19 TCGA-CA-6717-01 17 38953224 38953224 C T KRT28 Missense_Mutation p.E308K 0.11 deleterious(0.01) probably_damaging(0.939) TCGA-CA-6717-01 17 38976408 38976408 C A KRT10 Nonsense_Mutation p.E350* 0.21 TCGA-CA-6717-01 17 39087671 39087671 G T KRT23 Missense_Mutation p.L145I 0.12 deleterious(0) possibly_damaging(0.447) TCGA-CA-6717-01 17 39140159 39140159 C A KRT40 Nonsense_Mutation p.E123* 0.25 TCGA-CA-6717-01 17 39253603 39253603 A C KRTAP4-8 3'UTR 0.25 TCGA-CA-6717-01 17 39296342 39296342 A G KRTAP4-6 Missense_Mutation p.V133A 0.13 tolerated(0.15) unknown(0) TCGA-CA-6717-01 17 39341320 39341320 T A KRTAP4-1 5'UTR 0.12 TCGA-CA-6717-01 17 39383191 39383191 C T KRTAP9-2 Silent p.C95C 0.11 TCGA-CA-6717-01 17 39406578 39406578 C A KRTAP9-4 3'UTR 0.09 TCGA-CA-6717-01 17 39471584 39471584 T A KRTAP17-1 3'UTR 0.34 TCGA-CA-6717-01 17 39503458 39503458 C T KRT33A Missense_Mutation p.R202H 0.13 deleterious(0.02) possibly_damaging(0.634) TCGA-CA-6717-01 17 39521046 39521046 T C KRT33B Missense_Mutation p.E361G 0.12 deleterious(0) probably_damaging(0.956) TCGA-CA-6717-01 17 39616310 39616310 T C KRT32 3'UTR 0.31 TCGA-CA-6717-01 17 39622089 39622089 T C KRT32 Missense_Mutation p.D215G 0.15 deleterious(0.01) possibly_damaging(0.698) TCGA-CA-6717-01 17 39674961 39674961 C T KRT15 Missense_Mutation p.G40E 0.11 deleterious(0.01) unknown(0) TCGA-CA-6717-01 17 39724487 39724487 G T KRT9 Missense_Mutation p.L441I 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 39725762 39725762 G T KRT9 Silent p.T320T 0.07 TCGA-CA-6717-01 17 3978583 3978583 G A ZZEF1 Silent p.F1125F 0.08 TCGA-CA-6717-01 17 39846099 39846099 G T EIF1 Missense_Mutation p.R34I 0.21 deleterious(0) possibly_damaging(0.888) TCGA-CA-6717-01 17 40054067 40054067 G T ACLY Missense_Mutation p.S455Y 0.21 deleterious(0) possibly_damaging(0.815) TCGA-CA-6717-01 17 40120102 40120102 G A CNP Missense_Mutation p.R7Q 0.09 deleterious_low_confidence(0.04) benign(0.019) TCGA-CA-6717-01 17 40129310 40129310 G T DNAJC7 Missense_Mutation p.F472L 0.12 deleterious(0.01) benign(0.157) TCGA-CA-6717-01 17 40180083 40180083 C A ZNF385C Missense_Mutation p.E384D 0.08 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 17 40278791 40278791 C T RAB5C Missense_Mutation p.E206K 0.20 deleterious(0.02) benign(0.129) TCGA-CA-6717-01 17 40375510 40375510 G A STAT5B Missense_Mutation p.T147M 0.24 tolerated(0.06) possibly_damaging(0.568) TCGA-CA-6717-01 17 40481431 40481431 A G STAT3 Silent p.C426C 0.09 TCGA-CA-6717-01 17 40715107 40715107 A G COASY Missense_Mutation p.Y185C 0.26 tolerated(0.07) possibly_damaging(0.8) TCGA-CA-6717-01 17 40858193 40858193 A G EZH1 Silent p.R557R 0.21 TCGA-CA-6717-01 17 40956407 40956407 G A CNTD1 Missense_Mutation p.R137Q 0.17 deleterious(0.03) benign(0.002) TCGA-CA-6717-01 17 40997946 40997946 C T AOC2 Nonsense_Mutation p.R435* 0.26 TCGA-CA-6717-01 17 41001304 41001304 G A AOC2 Missense_Mutation p.R597H 0.21 deleterious(0.01) benign(0.33) TCGA-CA-6717-01 17 41004468 41004468 G A AOC3 Missense_Mutation p.A370T 0.09 tolerated(0.25) benign(0.004) TCGA-CA-6717-01 17 41063431 41063431 G T G6PC Missense_Mutation p.K354N 0.14 deleterious(0.04) benign(0.01) TCGA-CA-6717-01 17 41106925 41106925 A G AARSD1 Silent p.S307S 0.13 TCGA-CA-6717-01 17 41179272 41179272 T G RND2 Missense_Mutation p.I88S 0.13 deleterious(0) possibly_damaging(0.844) TCGA-CA-6717-01 17 41243595 41243595 A G BRCA1 Missense_Mutation p.I1318T 0.10 deleterious(0.01) benign(0.196) TCGA-CA-6717-01 17 41245479 41245479 T C BRCA1 Missense_Mutation p.K690R 0.09 tolerated(0.18) possibly_damaging(0.781) TCGA-CA-6717-01 17 41258514 41258514 C T BRCA1 Silent p.G57G 0.19 TCGA-CA-6717-01 17 41573591 41573591 T G DHX8 Missense_Mutation p.F419V 0.23 deleterious(0.02) benign(0.313) TCGA-CA-6717-01 17 41607295 41607295 T C ETV4 Silent p.R304R 0.13 TCGA-CA-6717-01 17 41738572 41738572 C A MEOX1 Missense_Mutation p.G111W 0.09 tolerated(0.19) possibly_damaging(0.599) TCGA-CA-6717-01 17 41891625 41891625 C T MPP3 Missense_Mutation p.E372K 0.19 tolerated(0.06) possibly_damaging(0.79) TCGA-CA-6717-01 17 42083065 42083065 T G NAGS Missense_Mutation p.F163V 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 42268132 42268132 G A TMUB2 Missense_Mutation p.R289Q 0.09 tolerated(0.27) probably_damaging(0.999) TCGA-CA-6717-01 17 42284960 42284960 G A UBTF Silent p.S677S 0.22 TCGA-CA-6717-01 17 42333124 42333124 G T SLC4A1 Missense_Mutation p.L573I 0.15 deleterious(0) probably_damaging(0.96) TCGA-CA-6717-01 17 42389993 42389993 C T RUNDC3A Silent p.I51I 0.26 TCGA-CA-6717-01 17 42483290 42483290 A G GPATCH8 Missense_Mutation p.C208R 0.10 deleterious(0.05) possibly_damaging(0.772) TCGA-CA-6717-01 17 424968 424968 T C VPS53 Missense_Mutation p.D699G 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 17 42745188 42745188 C A C17orf104 Missense_Mutation p.L637I 0.15 tolerated(0.16) possibly_damaging(0.625) TCGA-CA-6717-01 17 42818751 42818751 C A DBF4B Missense_Mutation p.S254Y 0.22 tolerated(0.16) benign(0.282) TCGA-CA-6717-01 17 42882801 42882801 C A GJC1 Nonsense_Mutation p.E129* 0.09 TCGA-CA-6717-01 17 43221026 43221026 T G ACBD4 3'UTR 0.18 TCGA-CA-6717-01 17 43229098 43229098 T G HEXIM1 3'UTR 0.09 TCGA-CA-6717-01 17 43229230 43229230 T G HEXIM1 3'UTR 0.27 TCGA-CA-6717-01 17 43307970 43307970 G T FMNL1 Splice_Site p.X44_splice 0.19 TCGA-CA-6717-01 17 43331799 43331799 C A SPATA32 Missense_Mutation p.E383D 0.22 deleterious(0.02) possibly_damaging(0.866) TCGA-CA-6717-01 17 43545661 43545661 C A PLEKHM1 Nonsense_Mutation p.E408* 0.11 TCGA-CA-6717-01 17 44087695 44087695 A C MAPT Missense_Mutation p.K616T 0.36 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 17 44144924 44144924 A C KANSL1 Missense_Mutation p.V548G 0.18 deleterious(0) probably_damaging(0.972) TCGA-CA-6717-01 17 44414893 44414893 G T LRRC37A Missense_Mutation p.K1671N 0.10 deleterious(0.01) benign(0.076) TCGA-CA-6717-01 17 44617546 44617546 C A LRRC37A2 Missense_Mutation p.L971I 0.11 deleterious(0.04) benign(0.007) TCGA-CA-6717-01 17 44626273 44626273 T C LRRC37A2 Silent p.P1256P 0.11 TCGA-CA-6717-01 17 44632700 44632700 A C LRRC37A2 Missense_Mutation p.K1655T 0.38 deleterious(0) possibly_damaging(0.587) TCGA-CA-6717-01 17 45099249 45099249 T C RP11-156P1.3 Intron 0.27 TCGA-CA-6717-01 17 45099286 45099286 C A RP11-156P1.3 Intron 0.36 TCGA-CA-6717-01 17 45247325 45247325 T C CDC27 Missense_Mutation p.D112G 0.15 deleterious(0.01) possibly_damaging(0.888) TCGA-CA-6717-01 17 4536763 4536763 T C ALOX15 Silent p.E398E 0.16 TCGA-CA-6717-01 17 45368350 45368350 C T ITGB3 Missense_Mutation p.R386C 0.14 tolerated(0.18) probably_damaging(0.962) TCGA-CA-6717-01 17 45421556 45421556 A C EFCAB13 Missense_Mutation p.K111T 0.21 tolerated(0.05) possibly_damaging(0.629) TCGA-CA-6717-01 17 45455181 45455181 A G EFCAB13 Silent p.A474A 0.09 TCGA-CA-6717-01 17 45455187 45455187 A G EFCAB13 Silent p.E476E 0.09 TCGA-CA-6717-01 17 45455221 45455221 T G EFCAB13 Missense_Mutation p.L488V 0.09 tolerated(0.06) possibly_damaging(0.599) TCGA-CA-6717-01 17 45468833 45468833 A C EFCAB13 Missense_Mutation p.K538T 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-CA-6717-01 17 45507238 45507238 T C EFCAB13 Missense_Mutation p.V850A 0.16 tolerated(0.11) benign(0.168) TCGA-CA-6717-01 17 45673724 45673724 C A NPEPPS Missense_Mutation p.L478I 0.11 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 17 45696409 45696409 T C NPEPPS Missense_Mutation p.I813T 0.20 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 17 45909209 45909209 C A LRRC46 5'UTR 0.26 TCGA-CA-6717-01 17 4624307 4624307 T C ARRB2 Silent p.D422D 0.16 TCGA-CA-6717-01 17 46607948 46607948 C T HOXB1 Missense_Mutation p.D107N 0.24 tolerated(0.14) possibly_damaging(0.735) TCGA-CA-6717-01 17 46657236 46657236 G T HOXB4 5'UTR 0.08 TCGA-CA-6717-01 17 46929933 46929933 G T CALCOCO2 Missense_Mutation p.E280D 0.10 deleterious(0.04) possibly_damaging(0.785) TCGA-CA-6717-01 17 46990283 46990283 A G UBE2Z Missense_Mutation p.I160V 0.10 tolerated(0.07) possibly_damaging(0.718) TCGA-CA-6717-01 17 47288173 47288173 C T ABI3 Silent p.V29V 0.19 TCGA-CA-6717-01 17 47299992 47299992 G A ABI3 Missense_Mutation p.R339H 0.23 deleterious(0) possibly_damaging(0.812) TCGA-CA-6717-01 17 47785092 47785092 A C SLC35B1 Missense_Mutation p.I35R 0.08 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 17 4790994 4790994 A C MINK1 Missense_Mutation p.Q380P 0.15 tolerated(0.27) benign(0.153) TCGA-CA-6717-01 17 4797387 4797387 G A MINK1 Missense_Mutation p.R890H 0.17 deleterious(0.01) possibly_damaging(0.813) TCGA-CA-6717-01 17 4798398 4798398 C T MINK1 Silent p.L982L 0.15 TCGA-CA-6717-01 17 48072098 48072098 C T DLX3 Missense_Mutation p.G89R 0.12 deleterious(0.02) benign(0.136) TCGA-CA-6717-01 17 48172877 48172877 C A PDK2 Missense_Mutation p.F26L 0.17 tolerated(0.07) benign(0.049) TCGA-CA-6717-01 17 48174790 48174790 C T PDK2 Missense_Mutation p.S41F 0.30 deleterious(0.02) probably_damaging(0.97) TCGA-CA-6717-01 17 48190369 48190369 C T SAMD14 Missense_Mutation p.R409H 0.30 deleterious(0) unknown(0) TCGA-CA-6717-01 17 48270014 48270014 G C COL1A1 Missense_Mutation p.S639C 0.13 unknown(0) TCGA-CA-6717-01 17 4836938 4836938 G T GP1BA Nonsense_Mutation p.E347* 0.16 TCGA-CA-6717-01 17 48452947 48452947 A C EME1 Missense_Mutation p.Q126H 0.10 tolerated(0.15) benign(0.042) TCGA-CA-6717-01 17 48601011 48601011 A C MYCBPAP Missense_Mutation p.T544P 0.10 tolerated(0.14) benign(0.331) TCGA-CA-6717-01 17 48601045 48601045 G A MYCBPAP Missense_Mutation p.R555Q 0.10 tolerated(0.17) benign(0.205) TCGA-CA-6717-01 17 48606426 48606426 C A MYCBPAP Silent p.V910V 0.28 TCGA-CA-6717-01 17 48646654 48646654 C T CACNA1G Silent p.I161I 0.12 TCGA-CA-6717-01 17 48669393 48669393 C T CACNA1G Silent p.F950F 0.08 TCGA-CA-6717-01 17 48673958 48673958 C A CACNA1G Missense_Mutation p.F1005L 0.10 tolerated(0.73) benign(0.001) TCGA-CA-6717-01 17 48696108 48696108 C T CACNA1G Silent p.F1840F 0.12 TCGA-CA-6717-01 17 48741109 48741109 A G ABCC3 Missense_Mutation p.M356V 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 17 48821148 48821148 G T LUC7L3 Nonsense_Mutation p.E170* 0.20 TCGA-CA-6717-01 17 4891785 4891785 G T INCA1 Missense_Mutation p.S209Y 0.09 deleterious(0.02) benign(0.235) TCGA-CA-6717-01 17 48940318 48940318 T G TOB1 3'UTR 0.17 TCGA-CA-6717-01 17 4903578 4903578 C T KIF1C Missense_Mutation p.R13W 0.22 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 17 49072561 49072561 A C SPAG9 Missense_Mutation p.L695V 0.14 deleterious(0.01) possibly_damaging(0.468) TCGA-CA-6717-01 17 4995188 4995188 A C ZFP3 Missense_Mutation p.K130T 0.15 tolerated(0.11) benign(0.031) TCGA-CA-6717-01 17 4995234 4995234 A G ZFP3 Silent p.E145E 0.13 TCGA-CA-6717-01 17 4996637 4996637 G T ZFP3 3'UTR 0.12 TCGA-CA-6717-01 17 4997709 4997709 G T ZFP3 3'UTR 0.12 TCGA-CA-6717-01 17 4998271 4998271 C T ZFP3 3'UTR 0.15 TCGA-CA-6717-01 17 4998534 4998534 A G ZFP3 3'UTR 0.12 TCGA-CA-6717-01 17 5058843 5058843 G T USP6 Missense_Mutation p.V924L 0.19 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-CA-6717-01 17 5071260 5071260 C T USP6 Missense_Mutation p.R1024W 0.09 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-CA-6717-01 17 5072085 5072085 A C USP6 Missense_Mutation p.Q1084H 0.07 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-CA-6717-01 17 5084544 5084544 G T ZNF594 3'UTR 0.30 TCGA-CA-6717-01 17 5084703 5084703 C A ZNF594 3'UTR 0.18 TCGA-CA-6717-01 17 5085060 5085060 G T ZNF594 3'UTR 0.10 TCGA-CA-6717-01 17 5085657 5085657 G T ZNF594 Missense_Mutation p.S632Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 17 5086053 5086053 C T ZNF594 Missense_Mutation p.R500H 0.28 tolerated(0.51) benign(0.002) TCGA-CA-6717-01 17 5086152 5086152 T G ZNF594 Missense_Mutation p.K467T 0.23 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 5087093 5087093 C T ZNF594 Silent p.K153K 0.09 TCGA-CA-6717-01 17 5087174 5087174 G T ZNF594 Silent p.T126T 0.07 TCGA-CA-6717-01 17 51900492 51900492 C T KIF2B Missense_Mutation p.A33V 0.28 tolerated(0.16) benign(0.07) TCGA-CA-6717-01 17 51900728 51900728 G A KIF2B Missense_Mutation p.A112T 0.24 tolerated(0.2) benign(0.002) TCGA-CA-6717-01 17 5268477 5268477 G T RABEP1 Missense_Mutation p.D577Y 0.19 tolerated(0.43) probably_damaging(0.949) TCGA-CA-6717-01 17 53040081 53040081 T G COX11 3'UTR 0.23 TCGA-CA-6717-01 17 53040110 53040110 A G COX11 Missense_Mutation p.V272A 0.18 tolerated(0.11) benign(0.071) TCGA-CA-6717-01 17 53040296 53040296 T G COX11 Intron 0.23 TCGA-CA-6717-01 17 53045908 53045908 G C COX11 Missense_Mutation p.P34A 0.11 tolerated_low_confidence(0.11) benign(0.001) TCGA-CA-6717-01 17 5322873 5322873 T C NUP88 Missense_Mutation p.N33S 0.18 tolerated(0.72) benign(0.002) TCGA-CA-6717-01 17 53392780 53392780 G A HLF Missense_Mutation p.R215H 0.19 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 534812 534812 G A VPS53 Missense_Mutation p.A222V 0.15 tolerated(0.1) benign(0.116) TCGA-CA-6717-01 17 5393811 5393811 A C MIS12 3'UTR 0.14 TCGA-CA-6717-01 17 5424238 5424238 G A NLRP1 Missense_Mutation p.S1293F 0.17 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 5424246 5424246 G A NLRP1 Silent p.Y1290Y 0.14 TCGA-CA-6717-01 17 5424251 5424251 G A NLRP1 Missense_Mutation p.R1289C 0.23 deleterious(0.02) probably_damaging(0.972) TCGA-CA-6717-01 17 5436616 5436616 G A NLRP1 Intron 0.23 TCGA-CA-6717-01 17 54672654 54672654 A T NOG 3'UTR 0.25 TCGA-CA-6717-01 17 54672735 54672735 T C NOG 3'UTR 0.12 TCGA-CA-6717-01 17 54672802 54672802 C T NOG 3'UTR 0.17 TCGA-CA-6717-01 17 5486061 5486061 G A NLRP1 Missense_Mutation p.A126V 0.16 tolerated_low_confidence(0.3) benign(0.001) TCGA-CA-6717-01 17 54892329 54892329 C A C17orf67 Missense_Mutation p.E19D 0.09 tolerated(1) benign(0.006) TCGA-CA-6717-01 17 54912473 54912473 T C DGKE Missense_Mutation p.F106S 0.27 tolerated(0.07) benign(0.122) TCGA-CA-6717-01 17 56232601 56232601 T C OR4D1 Silent p.L29L 0.12 TCGA-CA-6717-01 17 56233212 56233212 G T OR4D1 Missense_Mutation p.R233M 0.15 tolerated(0.1) probably_damaging(0.98) TCGA-CA-6717-01 17 56277690 56277690 G T EPX Missense_Mutation p.V548L 0.08 deleterious(0.05) benign(0.231) TCGA-CA-6717-01 17 56348076 56348076 A C MPO Missense_Mutation p.F727V 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 17 56386668 56386668 T G BZRAP1 Missense_Mutation p.Q1322P 0.19 deleterious(0.03) benign(0.301) TCGA-CA-6717-01 17 56620628 56620628 G T C17orf47 Missense_Mutation p.P307H 0.25 tolerated(0.08) benign(0.314) TCGA-CA-6717-01 17 56688538 56688538 C T TEX14 Missense_Mutation p.E396K 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 17 56707839 56707839 G A TEX14 Silent p.F71F 0.21 TCGA-CA-6717-01 17 57058152 57058152 G T PPM1E Missense_Mutation p.K676N 0.17 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-CA-6717-01 17 57079063 57079063 T C TRIM37 Missense_Mutation p.D903G 0.12 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-CA-6717-01 17 57141724 57141724 C A TRIM37 Missense_Mutation p.E284D 0.07 tolerated(0.18) possibly_damaging(0.602) TCGA-CA-6717-01 17 57148194 57148194 C T TRIM37 Missense_Mutation p.D267N 0.09 deleterious(0.03) benign(0.039) TCGA-CA-6717-01 17 57161432 57161432 T G TRIM37 Missense_Mutation p.E100D 0.21 deleterious(0.03) possibly_damaging(0.549) TCGA-CA-6717-01 17 57322787 57322787 C T GDPD1 Silent p.I66I 0.18 TCGA-CA-6717-01 17 57344403 57344403 A C GDPD1 Missense_Mutation p.N193T 0.14 deleterious(0) probably_damaging(0.938) TCGA-CA-6717-01 17 57348328 57348328 C A GDPD1 Missense_Mutation p.Q248K 0.18 tolerated(0.85) benign(0.007) TCGA-CA-6717-01 17 57652819 57652819 A C DHX40 Silent p.G320G 0.11 TCGA-CA-6717-01 17 57721701 57721701 A C CLTC Missense_Mutation p.K36T 0.22 deleterious(0) possibly_damaging(0.884) TCGA-CA-6717-01 17 57754433 57754433 C A CLTC Missense_Mutation p.L894I 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 17 57771244 57771244 T C CLTC 3'UTR 0.16 TCGA-CA-6717-01 17 57816225 57816225 C A VMP1 Missense_Mutation p.L111I 0.19 tolerated(0.24) benign(0.023) TCGA-CA-6717-01 17 57917266 57917266 T G VMP1 Silent p.T405T 0.10 TCGA-CA-6717-01 17 57937752 57937752 G A TUBD1 Silent p.I431I 0.12 TCGA-CA-6717-01 17 58011614 58011614 G T RPS6KB1 Nonsense_Mutation p.E258* 0.10 TCGA-CA-6717-01 17 58024741 58024741 T G RPS6KB1 3'UTR 0.50 TCGA-CA-6717-01 17 58024872 58024872 T G RPS6KB1 3'UTR 0.11 TCGA-CA-6717-01 17 58123501 58123501 A G HEATR6 Silent p.I953I 0.17 TCGA-CA-6717-01 17 58147083 58147083 G A HEATR6 Nonsense_Mutation p.R310* 0.10 TCGA-CA-6717-01 17 58232704 58232704 G A CA4 Missense_Mutation p.E30K 0.18 tolerated(1) benign(0.001) TCGA-CA-6717-01 17 58967089 58967089 C A BCAS3 Missense_Mutation p.P232H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 17 59668123 59668123 G A NACA2 Missense_Mutation p.A140V 0.25 deleterious(0) probably_damaging(0.939) TCGA-CA-6717-01 17 59761387 59761387 G T BRIP1 Missense_Mutation p.S1007Y 0.21 tolerated_low_confidence(1) benign(0.317) TCGA-CA-6717-01 17 59861772 59861772 G A BRIP1 Missense_Mutation p.A496V 0.12 deleterious(0.01) possibly_damaging(0.69) TCGA-CA-6717-01 17 60030378 60030378 G T MED13 Missense_Mutation p.S2022Y 0.25 deleterious(0.01) possibly_damaging(0.9) TCGA-CA-6717-01 17 60059715 60059715 T G MED13 Missense_Mutation p.I1217L 0.22 tolerated(1) benign(0) TCGA-CA-6717-01 17 60108809 60108809 T G MED13 Missense_Mutation p.Q335H 0.10 tolerated(0.57) benign(0.115) TCGA-CA-6717-01 17 60484531 60484531 C A EFCAB3 Missense_Mutation p.F327L 0.08 tolerated(0.14) probably_damaging(0.974) TCGA-CA-6717-01 17 60503891 60503891 C T METTL2A Missense_Mutation p.S145L 0.17 tolerated(0.28) benign(0.002) TCGA-CA-6717-01 17 60613667 60613667 G A TLK2 Missense_Mutation p.R167K 0.14 tolerated(0.61) benign(0.001) TCGA-CA-6717-01 17 60650613 60650613 G T TLK2 Nonsense_Mutation p.E336* 0.19 TCGA-CA-6717-01 17 60813653 60813653 C T MARCH10 Missense_Mutation p.E526K 0.15 deleterious(0) possibly_damaging(0.67) TCGA-CA-6717-01 17 61345178 61345178 C A TANC2 Missense_Mutation p.S294Y 0.12 deleterious(0) possibly_damaging(0.88) TCGA-CA-6717-01 17 613778 613778 C T VPS53 Missense_Mutation p.E55K 0.08 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 17 61492957 61492957 T C TANC2 Silent p.F1279F 0.09 TCGA-CA-6717-01 17 61613335 61613335 C A KCNH6 Missense_Mutation p.F469L 0.13 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 61829717 61829717 G T CCDC47 Missense_Mutation p.S389Y 0.15 deleterious(0.03) benign(0.182) TCGA-CA-6717-01 17 61864595 61864595 T C DDX42 Silent p.I62I 0.16 TCGA-CA-6717-01 17 61876957 61876957 G A DDX42 Missense_Mutation p.R148Q 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-CA-6717-01 17 61877918 61877918 A C DDX42 Missense_Mutation p.N188H 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 17 61885124 61885124 T C DDX42 Missense_Mutation p.I296T 0.10 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 17 61886999 61886999 G A DDX42 Missense_Mutation p.R411Q 0.13 deleterious(0.02) probably_damaging(0.968) TCGA-CA-6717-01 17 61904218 61904218 A C FTSJ3 Missense_Mutation p.F15L 0.14 deleterious(0) possibly_damaging(0.833) TCGA-CA-6717-01 17 61912886 61912886 A G SMARCD2 Silent p.S203S 0.12 TCGA-CA-6717-01 17 61949543 61949543 G A CSH2 Silent p.V199V 0.24 TCGA-CA-6717-01 17 61987400 61987400 G T CSHL1 Intron 0.14 TCGA-CA-6717-01 17 62019102 62019102 C T SCN4A Missense_Mutation p.D1514N 0.23 tolerated(0.07) benign(0.221) TCGA-CA-6717-01 17 62049821 62049821 C T SCN4A Missense_Mutation p.V95I 0.33 deleterious(0) benign(0.028) TCGA-CA-6717-01 17 62050038 62050038 C T SCN4A Missense_Mutation p.R55Q 0.14 tolerated(1) benign(0.001) TCGA-CA-6717-01 17 62230402 62230402 C A TEX2 Nonsense_Mutation p.E1022* 0.08 TCGA-CA-6717-01 17 62499549 62499549 T G DDX5 Missense_Mutation p.R216S 0.11 deleterious(0.02) probably_damaging(0.938) TCGA-CA-6717-01 17 62512937 62512937 C A CEP95 Missense_Mutation p.S155Y 0.14 tolerated(0.11) benign(0.045) TCGA-CA-6717-01 17 62529286 62529286 G T CEP95 Nonsense_Mutation p.E632* 0.12 TCGA-CA-6717-01 17 62557674 62557674 C T SMURF2 Silent p.K420K 0.16 TCGA-CA-6717-01 17 6351077 6351077 A G FAM64A Missense_Mutation p.S197G 0.11 tolerated(0.25) benign(0.059) TCGA-CA-6717-01 17 63822407 63822407 G A CEP112 Intron 0.09 TCGA-CA-6717-01 17 64734896 64734896 C T PRKCA Silent p.F415F 0.15 TCGA-CA-6717-01 17 64737810 64737810 C T PRKCA Silent p.F452F 0.22 TCGA-CA-6717-01 17 65026760 65026760 G T CACNG4 Missense_Mutation p.E208D 0.23 tolerated(0.24) benign(0.047) TCGA-CA-6717-01 17 65027141 65027141 G A CACNG4 3'UTR 0.11 TCGA-CA-6717-01 17 65116549 65116549 C A HELZ Missense_Mutation p.E1270D 0.06 tolerated_low_confidence(0.38) benign(0.018) TCGA-CA-6717-01 17 65214771 65214771 C A HELZ Missense_Mutation p.L50F 0.11 tolerated_low_confidence(0.31) possibly_damaging(0.69) TCGA-CA-6717-01 17 65336855 65336855 T G PSMD12 3'UTR 0.42 TCGA-CA-6717-01 17 65336932 65336932 T C PSMD12 3'UTR 0.12 TCGA-CA-6717-01 17 6545107 6545107 T A TXNDC17 Silent p.I60I 0.22 TCGA-CA-6717-01 17 6553362 6553362 A G MED31 Missense_Mutation p.F48S 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 17 6556150 6556150 T G C17orf100 3'UTR 0.31 TCGA-CA-6717-01 17 65822426 65822426 A G BPTF Missense_Mutation p.S196G 0.09 probably_damaging(0.992) TCGA-CA-6717-01 17 65890193 65890193 G T BPTF Nonsense_Mutation p.E819* 0.22 TCGA-CA-6717-01 17 65890283 65890283 T C BPTF Splice_Site p.X848_splice 0.09 TCGA-CA-6717-01 17 65905854 65905854 A C BPTF Missense_Mutation p.K990T 0.21 benign(0.059) TCGA-CA-6717-01 17 66267126 66267126 A G SLC16A6 Missense_Mutation p.F392S 0.10 deleterious(0.05) benign(0.303) TCGA-CA-6717-01 17 66526117 66526117 A G PRKAR1A Silent p.G316G 0.08 TCGA-CA-6717-01 17 66890312 66890312 A G ABCA8 Splice_Site p.X972_splice 0.12 TCGA-CA-6717-01 17 66898854 66898854 C A ABCA8 Missense_Mutation p.G882W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 17 66913553 66913553 G A ABCA8 Missense_Mutation p.A656V 0.14 tolerated(0.47) benign(0.052) TCGA-CA-6717-01 17 66914237 66914237 G A ABCA8 Silent p.R626R 0.14 TCGA-CA-6717-01 17 67003930 67003930 A C ABCA9 Missense_Mutation p.N1135K 0.10 deleterious(0.02) possibly_damaging(0.612) TCGA-CA-6717-01 17 67028388 67028388 A G ABCA9 Missense_Mutation p.F436L 0.12 deleterious(0.01) possibly_damaging(0.841) TCGA-CA-6717-01 17 67045629 67045629 T G ABCA9 Missense_Mutation p.E33D 0.28 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 17 67075194 67075194 C A ABCA6 Nonsense_Mutation p.E1592* 0.12 TCGA-CA-6717-01 17 67081809 67081809 G T ABCA6 Missense_Mutation p.S1329Y 0.27 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 17 67096964 67096964 G A ABCA6 Nonsense_Mutation p.R996* 0.24 TCGA-CA-6717-01 17 67132333 67132333 A C ABCA6 Missense_Mutation p.N120K 0.09 tolerated(0.25) benign(0.05) TCGA-CA-6717-01 17 67148281 67148281 C T ABCA10 Missense_Mutation p.D1434N 0.11 tolerated(0.18) benign(0.188) TCGA-CA-6717-01 17 67148528 67148528 C T ABCA10 Missense_Mutation p.A1411T 0.20 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 17 67151186 67151186 C A ABCA10 Missense_Mutation p.R1223I 0.20 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 17 67181744 67181744 C A ABCA10 Nonsense_Mutation p.E791* 0.27 TCGA-CA-6717-01 17 67255860 67255860 C A ABCA5 Missense_Mutation p.D1240Y 0.21 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 17 67256480 67256480 G A ABCA5 Missense_Mutation p.S1213L 0.10 deleterious(0.02) benign(0.003) TCGA-CA-6717-01 17 673186 673186 C A GLOD4 Nonsense_Mutation p.E252* 0.22 TCGA-CA-6717-01 17 673689 673689 C A GLOD4 Missense_Mutation p.R201I 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 17 67512995 67512995 G T MAP2K6 Splice_Site p.X28_splice 0.19 TCGA-CA-6717-01 17 68128475 68128475 C A KCNJ16 Missense_Mutation p.L83I 0.26 tolerated(0.09) probably_damaging(0.998) TCGA-CA-6717-01 17 68129545 68129545 C T KCNJ16 3'UTR 0.16 TCGA-CA-6717-01 17 68173400 68173400 T G KCNJ2 3'UTR 0.24 TCGA-CA-6717-01 17 6903660 6903660 T C ALOX12 Silent p.G271G 0.11 TCGA-CA-6717-01 17 6978920 6978920 A C CLEC10A Intron 0.30 TCGA-CA-6717-01 17 7094077 7094077 C T DLG4 Missense_Mutation p.E752K 0.15 tolerated(0.14) probably_damaging(0.951) TCGA-CA-6717-01 17 7096822 7096822 T C DLG4 Missense_Mutation p.K601R 0.33 tolerated(0.11) probably_damaging(0.99) TCGA-CA-6717-01 17 7100221 7100221 C T DLG4 Missense_Mutation p.R356Q 0.16 tolerated(0.05) possibly_damaging(0.514) TCGA-CA-6717-01 17 7130721 7130721 A G DVL2 Splice_Site p.X455_splice 0.12 TCGA-CA-6717-01 17 71418424 71418424 A G SDK2 Splice_Site p.X682_splice 0.32 TCGA-CA-6717-01 17 7144771 7144771 A G GABARAP Missense_Mutation p.F60L 0.09 tolerated(0.07) possibly_damaging(0.79) TCGA-CA-6717-01 17 7149619 7149619 T G CTDNEP1 Missense_Mutation p.K144T 0.19 tolerated(0.13) probably_damaging(0.948) TCGA-CA-6717-01 17 7193024 7193024 C T YBX2 Missense_Mutation p.R290H 0.10 deleterious(0.03) possibly_damaging(0.522) TCGA-CA-6717-01 17 72227048 72227048 C A TTYH2 Missense_Mutation p.F108L 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 17 72436456 72436456 C T GPRC5C Missense_Mutation p.R226W 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 17 7251259 7251259 C A ACAP1 Missense_Mutation p.F454L 0.22 tolerated(0.37) probably_damaging(0.999) TCGA-CA-6717-01 17 72537745 72537745 T C CD300C Missense_Mutation p.K220E 0.15 tolerated(0.52) benign(0) TCGA-CA-6717-01 17 72589322 72589322 C T C17orf77 3'UTR 0.23 TCGA-CA-6717-01 17 72699194 72699194 G A CD300LF Silent p.T142T 0.14 TCGA-CA-6717-01 17 72923327 72923327 C A OTOP2 Missense_Mutation p.L154I 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6717-01 17 72939390 72939390 C A OTOP3 Missense_Mutation p.L213I 0.12 deleterious(0.04) benign(0.234) TCGA-CA-6717-01 17 73227439 73227439 G A NUP85 Missense_Mutation p.A367T 0.24 tolerated(0.43) benign(0.045) TCGA-CA-6717-01 17 7324435 7324435 C A SPEM1 Missense_Mutation p.H147Q 0.15 deleterious(0.05) probably_damaging(0.944) TCGA-CA-6717-01 17 7329690 7329690 G A C17orf74 Missense_Mutation p.R127H 0.26 tolerated(0.36) probably_damaging(0.923) TCGA-CA-6717-01 17 73493259 73493259 C T KIAA0195 Silent p.C1129C 0.23 TCGA-CA-6717-01 17 73643773 73643773 G A SMIM6 3'UTR 0.18 TCGA-CA-6717-01 17 7367081 7367081 G T ZBTB4 Missense_Mutation p.P407H 0.17 probably_damaging(0.953) TCGA-CA-6717-01 17 73898122 73898122 G A MRPL38 Missense_Mutation p.R121W 0.12 deleterious(0) possibly_damaging(0.77) TCGA-CA-6717-01 17 74073168 74073168 C T GALR2 Missense_Mutation p.R274C 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 17 74276795 74276795 A G QRICH2 Silent p.G1301G 0.19 TCGA-CA-6717-01 17 74394932 74394932 A G UBE2O Missense_Mutation p.V590A 0.20 tolerated(0.07) probably_damaging(0.97) TCGA-CA-6717-01 17 74395585 74395585 G A UBE2O Missense_Mutation p.R525C 0.10 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 17 74730973 74730973 A C SRSF2 3'UTR 0.19 TCGA-CA-6717-01 17 74735027 74735027 T C MFSD11 Missense_Mutation p.V35A 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 17 74921056 74921056 G A MGAT5B Missense_Mutation p.G356E 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-CA-6717-01 17 75202903 75202903 G A SEC14L1 Missense_Mutation p.D479N 0.14 tolerated(0.06) benign(0.086) TCGA-CA-6717-01 17 7535021 7535021 G A SHBG Missense_Mutation p.G224R 0.20 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 17 76083070 76083070 C T TNRC6C Missense_Mutation p.S1230L 0.27 deleterious(0.01) benign(0.207) TCGA-CA-6717-01 17 76187059 76187059 G T AFMID Missense_Mutation p.E24D 0.15 tolerated(0.09) benign(0.226) TCGA-CA-6717-01 17 7644246 7644246 C T DNAH2 Missense_Mutation p.A542V 0.15 benign(0.297) TCGA-CA-6717-01 17 76446773 76446773 G A DNAH17 Silent p.I3616I 0.14 TCGA-CA-6717-01 17 76451810 76451810 G A DNAH17 Silent p.F3348F 0.13 TCGA-CA-6717-01 17 76511052 76511052 A G DNAH17 Missense_Mutation p.V1302A 0.09 benign(0.283) TCGA-CA-6717-01 17 76554318 76554318 C A DNAH17 Nonsense_Mutation p.E684* 0.27 TCGA-CA-6717-01 17 76566411 76566411 A G DNAH17 Missense_Mutation p.I321T 0.19 benign(0.065) TCGA-CA-6717-01 17 76567041 76567041 C T DNAH17 Missense_Mutation p.D303N 0.13 possibly_damaging(0.578) TCGA-CA-6717-01 17 76795781 76795781 T G USP36 Missense_Mutation p.K1031T 0.13 deleterious(0) possibly_damaging(0.65) TCGA-CA-6717-01 17 7680851 7680851 G T DNAH2 Nonsense_Mutation p.E1716* 0.13 TCGA-CA-6717-01 17 76816086 76816086 C T USP36 Silent p.A279A 0.09 TCGA-CA-6717-01 17 7689466 7689466 A G DNAH2 Missense_Mutation p.I2052V 0.09 benign(0.001) TCGA-CA-6717-01 17 76968166 76968166 A G LGALS3BP Missense_Mutation p.F417S 0.24 tolerated(0.9) benign(0) TCGA-CA-6717-01 17 7700556 7700556 G T DNAH2 Silent p.R2642R 0.13 TCGA-CA-6717-01 17 7726769 7726769 C T DNAH2 Missense_Mutation p.R3718W 0.30 probably_damaging(0.959) TCGA-CA-6717-01 17 7727286 7727286 C A DNAH2 Missense_Mutation p.L3822M 0.13 probably_damaging(0.988) TCGA-CA-6717-01 17 7734629 7734629 G T DNAH2 Missense_Mutation p.E4152D 0.39 benign(0.013) TCGA-CA-6717-01 17 7734801 7734801 C T DNAH2 Missense_Mutation p.L4185F 0.09 probably_damaging(0.964) TCGA-CA-6717-01 17 7748985 7748985 G A KDM6B Missense_Mutation p.R38H 0.11 unknown(0) TCGA-CA-6717-01 17 78157986 78157986 G A CARD14 Silent p.A208A 0.26 TCGA-CA-6717-01 17 7827493 7827493 T C KCNAB3 Missense_Mutation p.M268V 0.15 tolerated(1) benign(0.003) TCGA-CA-6717-01 17 7831143 7831143 T C KCNAB3 Missense_Mutation p.N82D 0.11 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 17 78333926 78333926 A C RNF213 Missense_Mutation p.N3707T 0.12 possibly_damaging(0.642) TCGA-CA-6717-01 17 7836621 7836621 T C CNTROB Missense_Mutation p.L75S 0.12 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 17 78923273 78923273 T A RPTOR Missense_Mutation p.F1099Y 0.09 tolerated(1) benign(0.008) TCGA-CA-6717-01 17 79422359 79422359 G A RP11-1055B8.7 Silent p.A1504A 0.09 TCGA-CA-6717-01 17 79496140 79496140 C T FSCN2 Missense_Mutation p.R195C 0.29 tolerated(0.06) benign(0.032) TCGA-CA-6717-01 17 79634802 79634802 G A CCDC137 Missense_Mutation p.E60K 0.15 deleterious(0.01) possibly_damaging(0.607) TCGA-CA-6717-01 17 79637324 79637324 A C CCDC137 Missense_Mutation p.K113T 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6717-01 17 7978925 7978925 G A ALOX12B Missense_Mutation p.R548W 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 17 79870310 79870310 T G SIRT7 Missense_Mutation p.K395N 0.11 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-CA-6717-01 17 80049405 80049405 G A FASN Silent p.F395F 0.14 TCGA-CA-6717-01 17 80213356 80213356 G T CSNK1D Missense_Mutation p.F95L 0.11 deleterious_low_confidence(0.01) benign(0.312) TCGA-CA-6717-01 17 8021542 8021542 T G ALOXE3 Silent p.R55R 0.10 TCGA-CA-6717-01 17 80320469 80320469 G T TEX19 Missense_Mutation p.R148I 0.27 deleterious(0) possibly_damaging(0.808) TCGA-CA-6717-01 17 80422301 80422301 A G NARF Missense_Mutation p.N83D 0.18 deleterious(0) possibly_damaging(0.653) TCGA-CA-6717-01 17 80426742 80426742 A G NARF Missense_Mutation p.R119G 0.11 deleterious(0.01) possibly_damaging(0.756) TCGA-CA-6717-01 17 80540616 80540616 G T FOXK2 Splice_Site p.X304_splice 0.29 TCGA-CA-6717-01 17 80685109 80685109 C A FN3KRP 3'UTR 0.33 TCGA-CA-6717-01 17 8158865 8158865 A G PFAS Missense_Mutation p.T144A 0.22 tolerated(0.96) benign(0.001) TCGA-CA-6717-01 17 8215511 8215511 G T ARHGEF15 Missense_Mutation p.D52Y 0.09 deleterious_low_confidence(0) benign(0.1) TCGA-CA-6717-01 17 8249134 8249134 A G ODF4 Silent p.G246G 0.19 TCGA-CA-6717-01 17 8274801 8274801 G T KRBA2 Missense_Mutation p.L18M 0.08 tolerated_low_confidence(0.14) unknown(0) TCGA-CA-6717-01 17 8404151 8404151 G A MYH10 Missense_Mutation p.A1246V 0.22 possibly_damaging(0.851) TCGA-CA-6717-01 17 8740147 8740147 C T PIK3R6 Missense_Mutation p.D118N 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 17 8791964 8791964 G A PIK3R5 Silent p.V380V 0.26 TCGA-CA-6717-01 17 8808993 8808993 A G PIK3R5 Missense_Mutation p.V89A 0.15 tolerated(0.1) benign(0.113) TCGA-CA-6717-01 17 902117 902117 G T TIMM22 Nonsense_Mutation p.E113* 0.11 TCGA-CA-6717-01 17 9503462 9503462 C T WDR16 Silent p.L239L 0.16 TCGA-CA-6717-01 17 9536213 9536213 G A WDR16 Missense_Mutation p.D395N 0.18 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 17 960287 960287 A T ABR Nonsense_Mutation p.C479* 0.11 TCGA-CA-6717-01 17 9676084 9676084 A G DHRS7C Missense_Mutation p.F244L 0.18 tolerated(0.39) benign(0.002) TCGA-CA-6717-01 17 9765353 9765353 T C GLP2R Silent p.N334N 0.10 TCGA-CA-6717-01 17 9774065 9774065 T G GLP2R Missense_Mutation p.V353G 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 18 10681683 10681683 A C PIEZO2 Missense_Mutation p.F2472C 0.14 deleterious(0) benign(0.233) TCGA-CA-6717-01 18 117074 117074 A G ROCK1P1 RNA 0.17 TCGA-CA-6717-01 18 117132 117132 A T ROCK1P1 RNA 0.11 TCGA-CA-6717-01 18 118488 118488 A G ROCK1P1 RNA 0.06 TCGA-CA-6717-01 18 11868564 11868564 C T GNAL Silent p.V311V 0.27 TCGA-CA-6717-01 18 11884350 11884350 C T MPPE1 3'UTR 0.21 TCGA-CA-6717-01 18 11884547 11884547 C T MPPE1 Missense_Mutation p.G363E 0.31 tolerated(0.11) benign(0.199) TCGA-CA-6717-01 18 12329686 12329686 C A AFG3L2 Nonsense_Mutation p.E758* 0.22 TCGA-CA-6717-01 18 12337386 12337386 T G AFG3L2 Missense_Mutation p.K710T 0.10 tolerated(0.22) benign(0.01) TCGA-CA-6717-01 18 12337433 12337433 T C AFG3L2 Silent p.A694A 0.11 TCGA-CA-6717-01 18 12370869 12370869 C A AFG3L2 Nonsense_Mutation p.E91* 0.06 TCGA-CA-6717-01 18 12817259 12817259 C A PTPN2 Nonsense_Mutation p.E201* 0.21 TCGA-CA-6717-01 18 13087197 13087197 C A CEP192 Missense_Mutation p.S1933Y 0.11 tolerated(1) benign(0.103) TCGA-CA-6717-01 18 13087626 13087626 T G CEP192 Missense_Mutation p.S1992A 0.18 tolerated(0.17) possibly_damaging(0.672) TCGA-CA-6717-01 18 13885338 13885338 G T MC2R Nonsense_Mutation p.Y60* 0.20 TCGA-CA-6717-01 18 14105803 14105803 C A ZNF519 Missense_Mutation p.V246F 0.13 tolerated(0.39) benign(0) TCGA-CA-6717-01 18 14106069 14106069 T G ZNF519 Missense_Mutation p.K157T 0.14 deleterious(0.02) benign(0.061) TCGA-CA-6717-01 18 14537832 14537832 A C POTEC Missense_Mutation p.L260V 0.10 tolerated(0.25) probably_damaging(0.973) TCGA-CA-6717-01 18 14754968 14754968 A C ANKRD30B Missense_Mutation p.K194T 0.12 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 18 14843060 14843060 G A ANKRD30B Missense_Mutation p.G930D 0.10 tolerated(0.14) possibly_damaging(0.623) TCGA-CA-6717-01 18 18547038 18547038 C A ROCK1 Splice_Site p.X1065_splice 0.26 TCGA-CA-6717-01 18 18559902 18559902 A C ROCK1 Missense_Mutation p.L875V 0.21 tolerated(0.09) benign(0.044) TCGA-CA-6717-01 18 18983896 18983896 C T GREB1L Missense_Mutation p.S258L 0.18 tolerated(0.15) benign(0.1) TCGA-CA-6717-01 18 19070304 19070304 C T GREB1L Nonsense_Mutation p.R1008* 0.26 TCGA-CA-6717-01 18 19119885 19119885 T G ESCO1 Missense_Mutation p.K680T 0.11 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 18 19762791 19762791 C A GATA6 Nonsense_Mutation p.S501* 0.07 TCGA-CA-6717-01 18 19995631 19995631 G A CTAGE1 Missense_Mutation p.A715V 0.23 deleterious(0.02) benign(0.02) TCGA-CA-6717-01 18 20548792 20548792 G A RBBP8 Missense_Mutation p.R91H 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6717-01 18 20833778 20833778 A C CABLES1 Missense_Mutation p.K547Q 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6717-01 18 21033386 21033386 C T RIOK3 5'UTR 0.25 TCGA-CA-6717-01 18 21089232 21089232 G A C18orf8 Missense_Mutation p.E133K 0.16 deleterious(0) benign(0.084) TCGA-CA-6717-01 18 21119798 21119798 A C NPC1 Missense_Mutation p.F924L 0.10 deleterious(0.03) benign(0.146) TCGA-CA-6717-01 18 21121166 21121166 G A NPC1 Missense_Mutation p.R794W 0.21 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 18 21181125 21181125 A G ANKRD29 3'UTR 0.15 TCGA-CA-6717-01 18 21192123 21192123 A G ANKRD29 Missense_Mutation p.L252P 0.10 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 18 21534537 21534537 T G LAMA3 Missense_Mutation p.N3309K 0.10 probably_damaging(0.994) TCGA-CA-6717-01 18 21736843 21736843 C T CABYR Intron 0.16 TCGA-CA-6717-01 18 22007965 22007965 G T IMPACT Missense_Mutation p.R40I 0.09 deleterious(0.01) possibly_damaging(0.845) TCGA-CA-6717-01 18 22023064 22023064 A G IMPACT Missense_Mutation p.D181G 0.30 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 18 22805592 22805592 C T ZNF521 Missense_Mutation p.E764K 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 18 22806137 22806137 T G ZNF521 Missense_Mutation p.K582T 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 18 22806606 22806606 T A ZNF521 Nonsense_Mutation p.K426* 0.11 TCGA-CA-6717-01 18 24436354 24436354 C T AQP4 Missense_Mutation p.A265T 0.19 tolerated(0.55) benign(0.003) TCGA-CA-6717-01 18 24440747 24440747 C A AQP4 Nonsense_Mutation p.E228* 0.20 TCGA-CA-6717-01 18 24496286 24496286 T C CHST9 Silent p.Q423Q 0.08 TCGA-CA-6717-01 18 24497283 24497283 C T CHST9 Missense_Mutation p.R91Q 0.14 tolerated(0.26) benign(0.023) TCGA-CA-6717-01 18 247949 247949 G T THOC1 Missense_Mutation p.P229Q 0.20 tolerated(0.06) possibly_damaging(0.904) TCGA-CA-6717-01 18 2544701 2544701 C T METTL4 Missense_Mutation p.E378K 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 18 25585859 25585859 G T CDH2 Missense_Mutation p.F267L 0.17 deleterious(0.01) possibly_damaging(0.791) TCGA-CA-6717-01 18 2566996 2566996 C A METTL4 Missense_Mutation p.D74Y 0.18 deleterious(0.02) possibly_damaging(0.45) TCGA-CA-6717-01 18 25727721 25727721 C T CDH2 Missense_Mutation p.A30T 0.29 tolerated(0.54) benign(0) TCGA-CA-6717-01 18 2578058 2578058 C A NDC80 Missense_Mutation p.L132I 0.11 tolerated(1) benign(0.078) TCGA-CA-6717-01 18 2590030 2590030 C T NDC80 Missense_Mutation p.S295L 0.09 deleterious(0.04) benign(0.012) TCGA-CA-6717-01 18 2590129 2590129 T C NDC80 Missense_Mutation p.L328S 0.08 tolerated(0.31) benign(0.004) TCGA-CA-6717-01 18 260241 260241 T C THOC1 Missense_Mutation p.D107G 0.11 deleterious(0.03) benign(0.446) TCGA-CA-6717-01 18 2666210 2666210 G T SMCHD1 Nonsense_Mutation p.E81* 0.12 TCGA-CA-6717-01 18 2666947 2666947 G A SMCHD1 Missense_Mutation p.R114Q 0.20 deleterious(0.04) possibly_damaging(0.826) TCGA-CA-6717-01 18 2747544 2747544 G T SMCHD1 Missense_Mutation p.D1276Y 0.20 deleterious(0.02) benign(0.006) TCGA-CA-6717-01 18 2777803 2777803 G T SMCHD1 Splice_Site p.X1789_splice 0.15 TCGA-CA-6717-01 18 28598047 28598047 G T DSC3 Missense_Mutation p.S418Y 0.24 tolerated(0.21) benign(0.001) TCGA-CA-6717-01 18 28648063 28648063 C T DSC2 Missense_Mutation p.R875Q 0.23 tolerated(0.59) benign(0.01) TCGA-CA-6717-01 18 28669413 28669413 C A DSC2 Nonsense_Mutation p.E207* 0.16 TCGA-CA-6717-01 18 2890973 2890973 T C EMILIN2 Missense_Mutation p.L283P 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 18 28909888 28909888 G T DSG1 Missense_Mutation p.D136Y 0.11 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 18 2891538 2891538 T C EMILIN2 Silent p.I471I 0.25 TCGA-CA-6717-01 18 2891561 2891561 T G EMILIN2 Missense_Mutation p.I479S 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 18 28934868 28934868 T G DSG1 Silent p.S903S 0.18 TCGA-CA-6717-01 18 29040886 29040886 G T DSG3 Missense_Mutation p.D259Y 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 18 29041235 29041235 C T DSG3 Nonsense_Mutation p.R287* 0.18 TCGA-CA-6717-01 18 29041236 29041236 G A DSG3 Missense_Mutation p.R287Q 0.24 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 18 29055616 29055616 T G DSG3 Missense_Mutation p.F798C 0.12 deleterious(0) probably_damaging(0.935) TCGA-CA-6717-01 18 29102106 29102106 A C DSG2 Missense_Mutation p.K195T 0.25 deleterious(0) probably_damaging(0.932) TCGA-CA-6717-01 18 29115356 29115356 G T DSG2 Missense_Mutation p.K468N 0.11 deleterious(0.03) probably_damaging(0.975) TCGA-CA-6717-01 18 29171918 29171918 C T TTR Missense_Mutation p.S18F 0.12 deleterious(0.01) possibly_damaging(0.677) TCGA-CA-6717-01 18 29340543 29340543 C A SLC25A52 Missense_Mutation p.V38F 0.08 tolerated(0.17) benign(0.004) TCGA-CA-6717-01 18 29450933 29450933 T C TRAPPC8 Missense_Mutation p.N738S 0.13 tolerated(0.33) benign(0.02) TCGA-CA-6717-01 18 2945629 2945629 C A LPIN2 Intron 0.11 TCGA-CA-6717-01 18 29598933 29598933 A G RNF125 Missense_Mutation p.D36G 0.07 tolerated(0.07) benign(0.006) TCGA-CA-6717-01 18 29617189 29617189 G T RNF125 Missense_Mutation p.R92I 0.09 deleterious(0.03) benign(0.063) TCGA-CA-6717-01 18 29784213 29784213 G A MEP1B Missense_Mutation p.R146Q 0.19 tolerated(0.08) possibly_damaging(0.783) TCGA-CA-6717-01 18 29800219 29800219 G A MEP1B 3'UTR 0.17 TCGA-CA-6717-01 18 29848393 29848393 C G GAREM Missense_Mutation p.S691T 0.15 tolerated(0.53) benign(0) TCGA-CA-6717-01 18 30254598 30254598 T C KLHL14 3'UTR 0.10 TCGA-CA-6717-01 18 30257212 30257212 A G KLHL14 Missense_Mutation p.L557S 0.18 tolerated(0.18) benign(0.247) TCGA-CA-6717-01 18 30260462 30260462 C A KLHL14 Nonsense_Mutation p.E447* 0.14 TCGA-CA-6717-01 18 30672779 30672779 G T CCDC178 Missense_Mutation p.F778L 0.11 tolerated(0.23) benign(0.148) TCGA-CA-6717-01 18 3079224 3079224 A G MYOM1 Missense_Mutation p.F1534S 0.20 tolerated(0.1) benign(0.366) TCGA-CA-6717-01 18 30795517 30795517 A C CCDC178 Nonsense_Mutation p.L692* 0.22 TCGA-CA-6717-01 18 30803120 30803120 T G CCDC178 Missense_Mutation p.K628Q 0.15 tolerated(0.17) possibly_damaging(0.548) TCGA-CA-6717-01 18 30873136 30873136 G T CCDC178 Missense_Mutation p.S388Y 0.09 tolerated(0.38) benign(0.407) TCGA-CA-6717-01 18 3112407 3112407 G A MYOM1 Nonsense_Mutation p.R1103* 0.20 TCGA-CA-6717-01 18 31187614 31187614 T C ASXL3 Silent p.I37I 0.08 TCGA-CA-6717-01 18 31311985 31311985 C A ASXL3 Missense_Mutation p.F311L 0.27 benign(0.092) TCGA-CA-6717-01 18 31314316 31314316 T G ASXL3 Missense_Mutation p.I340S 0.14 probably_damaging(0.999) TCGA-CA-6717-01 18 31318522 31318522 C A ASXL3 Missense_Mutation p.S385Y 0.13 probably_damaging(0.935) TCGA-CA-6717-01 18 31318632 31318632 C A ASXL3 Missense_Mutation p.L422I 0.08 benign(0.006) TCGA-CA-6717-01 18 31319526 31319526 T C ASXL3 Missense_Mutation p.S720P 0.15 probably_damaging(0.998) TCGA-CA-6717-01 18 31323516 31323516 C T ASXL3 Missense_Mutation p.S1235F 0.22 benign(0.352) TCGA-CA-6717-01 18 31432889 31432889 G A NOL4 Missense_Mutation p.L612F 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 18 31523138 31523138 C T NOL4 Missense_Mutation p.R478Q 0.17 deleterious(0) probably_damaging(0.965) TCGA-CA-6717-01 18 31538258 31538258 G A NOL4 Missense_Mutation p.S394L 0.19 tolerated(0.06) benign(0.072) TCGA-CA-6717-01 18 3168922 3168922 A C MYOM1 Missense_Mutation p.F411C 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 18 3173992 3173992 T G MYOM1 Missense_Mutation p.K373T 0.16 deleterious(0) benign(0.266) TCGA-CA-6717-01 18 321737 321737 T C COLEC12 Missense_Mutation p.I712V 0.13 tolerated(0.16) unknown(0) TCGA-CA-6717-01 18 32677530 32677530 C A MAPRE2 Nonsense_Mutation p.S124* 0.17 TCGA-CA-6717-01 18 32677535 32677535 A G MAPRE2 Missense_Mutation p.K126E 0.13 deleterious(0) possibly_damaging(0.873) TCGA-CA-6717-01 18 32825343 32825343 A T ZNF397 Missense_Mutation p.K225M 0.11 tolerated(0.07) benign(0.071) TCGA-CA-6717-01 18 32833517 32833517 C A ZSCAN30 Missense_Mutation p.R461I 0.07 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 18 32837894 32837894 T G ZSCAN30 Intron 0.07 TCGA-CA-6717-01 18 32888495 32888495 T G ZNF271 RNA 0.13 TCGA-CA-6717-01 18 32889287 32889287 A G ZNF271 RNA 0.21 TCGA-CA-6717-01 18 32890545 32890545 T C ZNF271 RNA 0.18 TCGA-CA-6717-01 18 33690972 33690972 C A SLC39A6 Intron 0.20 TCGA-CA-6717-01 18 33740913 33740913 A C ELP2 Missense_Mutation p.E634D 0.17 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 18 34289210 34289210 G T FHOD3 Nonsense_Mutation p.E622* 0.18 TCGA-CA-6717-01 18 3447684 3447684 T G TGIF1 5'Flank 0.13 TCGA-CA-6717-01 18 3451927 3451927 T C TGIF1 5'UTR 0.13 TCGA-CA-6717-01 18 39593453 39593453 A T PIK3C3 Missense_Mutation p.E406D 0.10 tolerated(0.08) benign(0.136) TCGA-CA-6717-01 18 39613805 39613805 G A PIK3C3 Missense_Mutation p.A575T 0.13 tolerated(0.09) benign(0.006) TCGA-CA-6717-01 18 40323454 40323454 G T RIT2 3'UTR 0.17 TCGA-CA-6717-01 18 40323652 40323652 C T RIT2 Missense_Mutation p.E154K 0.16 tolerated(0.13) benign(0.202) TCGA-CA-6717-01 18 42530725 42530725 G T SETBP1 Nonsense_Mutation p.E474* 0.14 TCGA-CA-6717-01 18 42532107 42532107 G T SETBP1 Missense_Mutation p.K934N 0.36 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 18 42532252 42532252 C T SETBP1 Missense_Mutation p.P983S 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 18 42532264 42532264 C T SETBP1 Missense_Mutation p.R987W 0.13 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 18 42532617 42532617 C T SETBP1 Silent p.S1104S 0.16 TCGA-CA-6717-01 18 42643219 42643219 C T SETBP1 Silent p.F1449F 0.10 TCGA-CA-6717-01 18 43252867 43252867 T C SLC14A2 Silent p.L744L 0.10 TCGA-CA-6717-01 18 43307211 43307211 T G SLC14A1 5'UTR 0.10 TCGA-CA-6717-01 18 43319138 43319138 C A SLC14A1 Missense_Mutation p.S281Y 0.08 deleterious(0) probably_damaging(0.944) TCGA-CA-6717-01 18 43438732 43438732 T C EPG5 Missense_Mutation p.N2342S 0.13 tolerated(0.75) possibly_damaging(0.644) TCGA-CA-6717-01 18 43502447 43502447 C T EPG5 Silent p.P986P 0.12 TCGA-CA-6717-01 18 43508946 43508946 C A EPG5 Missense_Mutation p.E814D 0.11 tolerated(0.09) probably_damaging(0.953) TCGA-CA-6717-01 18 43534867 43534867 C A EPG5 Missense_Mutation p.M167I 0.12 tolerated_low_confidence(0.28) benign(0) TCGA-CA-6717-01 18 43572162 43572162 C T PSTPIP2 Missense_Mutation p.E250K 0.12 deleterious(0) possibly_damaging(0.604) TCGA-CA-6717-01 18 43591167 43591167 G A PSTPIP2 Nonsense_Mutation p.Q112* 0.12 TCGA-CA-6717-01 18 44098216 44098216 G T LOXHD1 Missense_Mutation p.L648I 0.21 tolerated(0.61) benign(0.387) TCGA-CA-6717-01 18 44109190 44109190 G A LOXHD1 Nonsense_Mutation p.R383* 0.19 TCGA-CA-6717-01 18 44118263 44118263 G T LOXHD1 Silent p.V206V 0.08 TCGA-CA-6717-01 18 44122784 44122784 G A LOXHD1 Silent p.S107S 0.26 TCGA-CA-6717-01 18 44143068 44143068 C T LOXHD1 5'Flank 0.19 TCGA-CA-6717-01 18 44149562 44149562 G T LOXHD1 Missense_Mutation p.S696Y 0.11 tolerated(0.33) benign(0.044) TCGA-CA-6717-01 18 44149564 44149564 G T LOXHD1 Silent p.V695V 0.10 TCGA-CA-6717-01 18 44173574 44173574 C T LOXHD1 Missense_Mutation p.E474K 0.19 deleterious(0) benign(0.027) TCGA-CA-6717-01 18 44173616 44173616 G T LOXHD1 Missense_Mutation p.L460I 0.13 tolerated(0.42) benign(0.031) TCGA-CA-6717-01 18 44190831 44190831 A G LOXHD1 Missense_Mutation p.F223L 0.16 deleterious(0) possibly_damaging(0.682) TCGA-CA-6717-01 18 44559406 44559406 G A TCEB3B Nonsense_Mutation p.R744* 0.13 TCGA-CA-6717-01 18 44559543 44559543 C A TCEB3B Missense_Mutation p.S698I 0.24 deleterious(0.02) possibly_damaging(0.559) TCGA-CA-6717-01 18 44561901 44561901 C T TCEB3B 5'UTR 0.07 TCGA-CA-6717-01 18 44595969 44595969 C T KATNAL2 Missense_Mutation p.R264W 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 18 44682602 44682602 C T IER3IP1 Silent p.V65V 0.18 TCGA-CA-6717-01 18 46860147 46860147 C A DYM Nonsense_Mutation p.E191* 0.13 TCGA-CA-6717-01 18 47107831 47107831 C A LIPG Silent p.L280L 0.15 TCGA-CA-6717-01 18 47352905 47352905 G T MYO5B Missense_Mutation p.S1828Y 0.21 deleterious(0) possibly_damaging(0.602) TCGA-CA-6717-01 18 47363149 47363149 A C MYO5B Missense_Mutation p.L1749V 0.11 tolerated(1) benign(0.173) TCGA-CA-6717-01 18 47421353 47421353 G T MYO5B Silent p.I1001I 0.30 TCGA-CA-6717-01 18 47516863 47516863 A C MYO5B Missense_Mutation p.F262V 0.19 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 18 47563303 47563303 G T MYO5B Silent p.I124I 0.24 TCGA-CA-6717-01 18 48327869 48327869 G A MRO Silent p.N159N 0.18 TCGA-CA-6717-01 18 48434439 48434439 G A ME2 Missense_Mutation p.A39T 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 18 48513365 48513365 A G ELAC1 Silent p.E334E 0.16 TCGA-CA-6717-01 18 48513402 48513402 G T ELAC1 Nonsense_Mutation p.E347* 0.19 TCGA-CA-6717-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.10 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 18 48703361 48703361 G T MEX3C Missense_Mutation p.S447Y 0.26 deleterious(0.03) probably_damaging(0.921) TCGA-CA-6717-01 18 48703873 48703873 A C MEX3C Missense_Mutation p.I276M 0.19 deleterious(0) probably_damaging(0.932) TCGA-CA-6717-01 18 50278729 50278729 A C DCC Missense_Mutation p.K133Q 0.10 deleterious(0.01) benign(0.097) TCGA-CA-6717-01 18 50705400 50705400 C A DCC Missense_Mutation p.A496D 0.17 tolerated(0.09) benign(0.207) TCGA-CA-6717-01 18 50705454 50705454 C A DCC Missense_Mutation p.S514Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 18 50923701 50923701 T C DCC Silent p.S904S 0.19 TCGA-CA-6717-01 18 50936928 50936928 T C DCC Silent p.L1014L 0.16 TCGA-CA-6717-01 18 51820136 51820136 A C POLI Missense_Mutation p.N508H 0.09 tolerated(0.29) benign(0.001) TCGA-CA-6717-01 18 52265396 52265396 C T DYNAP 3'UTR 0.13 TCGA-CA-6717-01 18 5290968 5290968 A G ZBTB14 Silent p.S413S 0.09 TCGA-CA-6717-01 18 52927251 52927251 G T TCF4 Missense_Mutation p.S435Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 18 5428319 5428319 G A EPB41L3 Missense_Mutation p.P353L 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 18 5438058 5438058 G A EPB41L3 Missense_Mutation p.A194V 0.12 tolerated(0.09) benign(0.196) TCGA-CA-6717-01 18 54423868 54423868 A G WDR7 Missense_Mutation p.N682D 0.09 deleterious(0.01) possibly_damaging(0.872) TCGA-CA-6717-01 18 55274510 55274510 T G NARS Missense_Mutation p.K286T 0.15 tolerated(0.07) benign(0.042) TCGA-CA-6717-01 18 55362747 55362747 A C ATP8B1 Missense_Mutation p.F239C 0.25 tolerated(0.14) probably_damaging(1) TCGA-CA-6717-01 18 56040472 56040472 T C NEDD4L Missense_Mutation p.F775L 0.15 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 18 56050549 56050549 C T NEDD4L Silent p.I808I 0.30 TCGA-CA-6717-01 18 56054711 56054711 T G NEDD4L Missense_Mutation p.F843C 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 18 56057965 56057965 G A NEDD4L Missense_Mutation p.E915K 0.21 deleterious(0) probably_damaging(0.918) TCGA-CA-6717-01 18 56204865 56204865 A C ALPK2 Missense_Mutation p.L852V 0.07 deleterious(0.01) possibly_damaging(0.908) TCGA-CA-6717-01 18 56246910 56246910 G A ALPK2 Silent p.F366F 0.21 TCGA-CA-6717-01 18 56620865 56620865 A C ZNF532 Missense_Mutation p.K995T 0.09 tolerated(0.41) benign(0.032) TCGA-CA-6717-01 18 56892885 56892885 C A GRP Missense_Mutation p.P101T 0.11 tolerated(0.55) benign(0.07) TCGA-CA-6717-01 18 57022864 57022864 G A LMAN1 Nonsense_Mutation p.R81* 0.15 TCGA-CA-6717-01 18 5891602 5891602 C T TMEM200C Missense_Mutation p.R154H 0.27 tolerated(0.09) probably_damaging(0.991) TCGA-CA-6717-01 18 59158026 59158026 C T CDH20 Silent p.V80V 0.17 TCGA-CA-6717-01 18 59203761 59203761 T G CDH20 Missense_Mutation p.F436C 0.12 tolerated(0.17) possibly_damaging(0.853) TCGA-CA-6717-01 18 5956177 5956177 A C L3MBTL4 3'UTR 0.10 TCGA-CA-6717-01 18 5960141 5960141 T C L3MBTL4 Silent p.V552V 0.13 TCGA-CA-6717-01 18 59855144 59855144 A G KIAA1468 Missense_Mutation p.N136D 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 18 59878416 59878416 C A KIAA1468 Missense_Mutation p.S186Y 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 18 60015413 60015413 A C TNFRSF11A Missense_Mutation p.I30L 0.11 tolerated(0.07) benign(0.009) TCGA-CA-6717-01 18 60033969 60033969 T C TNFRSF11A Silent p.A253A 0.09 TCGA-CA-6717-01 18 60241924 60241924 A C ZCCHC2 Missense_Mutation p.K870N 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6717-01 18 60563184 60563184 T C PHLPP1 Missense_Mutation p.V795A 0.09 tolerated(0.05) benign(0.065) TCGA-CA-6717-01 18 60645614 60645614 C A PHLPP1 Missense_Mutation p.F1368L 0.19 tolerated(0.19) possibly_damaging(0.781) TCGA-CA-6717-01 18 61067905 61067905 T C VPS4B Silent p.L172L 0.19 TCGA-CA-6717-01 18 61160371 61160371 G A SERPINB5 Intron 0.19 TCGA-CA-6717-01 18 61254547 61254547 G T SERPINB13 5'Flank 0.15 TCGA-CA-6717-01 18 61306936 61306936 A C SERPINB4 Missense_Mutation p.F182V 0.19 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 18 61325786 61325786 G A SERPINB3 Nonsense_Mutation p.R144* 0.12 TCGA-CA-6717-01 18 61379837 61379837 C T SERPINB11 Silent p.V89V 0.12 TCGA-CA-6717-01 18 61383355 61383355 G A SERPINB11 Silent p.T148T 0.11 TCGA-CA-6717-01 18 61587023 61587023 A C SERPINB10 Missense_Mutation p.K125T 0.16 tolerated(0.42) benign(0.077) TCGA-CA-6717-01 18 61627536 61627536 G A HMSD Missense_Mutation p.D123N 0.12 tolerated(0.24) benign(0.049) TCGA-CA-6717-01 18 6264037 6264037 A G L3MBTL4 Missense_Mutation p.V43A 0.25 tolerated(0.93) benign(0.001) TCGA-CA-6717-01 18 63492057 63492057 C A CDH7 Missense_Mutation p.T324N 0.18 tolerated(0.08) possibly_damaging(0.836) TCGA-CA-6717-01 18 64172492 64172492 G T CDH19 Missense_Mutation p.L626I 0.12 tolerated(0.17) possibly_damaging(0.899) TCGA-CA-6717-01 18 64235914 64235914 A C CDH19 Missense_Mutation p.F77V 0.22 tolerated(0.98) possibly_damaging(0.676) TCGA-CA-6717-01 18 65178778 65178778 G A DSEL Missense_Mutation p.S1033L 0.32 tolerated(0.06) probably_damaging(0.944) TCGA-CA-6717-01 18 66678291 66678291 A C CCDC102B Silent p.R462R 0.22 TCGA-CA-6717-01 18 67365683 67365683 T G DOK6 Missense_Mutation p.I151M 0.23 deleterious(0.01) possibly_damaging(0.863) TCGA-CA-6717-01 18 67563139 67563139 G T CD226 Silent p.L175L 0.13 TCGA-CA-6717-01 18 67816179 67816179 C T RTTN Missense_Mutation p.R756Q 0.10 deleterious(0.01) benign(0.141) TCGA-CA-6717-01 18 67860641 67860641 C T RTTN Missense_Mutation p.G297D 0.17 tolerated(0.18) benign(0.02) TCGA-CA-6717-01 18 67994812 67994812 C A SOCS6 3'UTR 0.16 TCGA-CA-6717-01 18 67997422 67997422 T G SOCS6 3'UTR 0.15 TCGA-CA-6717-01 18 67997425 67997425 C T SOCS6 3'UTR 0.24 TCGA-CA-6717-01 18 6873412 6873412 T G ARHGAP28 Missense_Mutation p.F161C 0.09 deleterious(0.01) possibly_damaging(0.886) TCGA-CA-6717-01 18 6978322 6978322 G A LAMA1 Silent p.S2021S 0.14 TCGA-CA-6717-01 18 6983198 6983198 G A LAMA1 Missense_Mutation p.A1899V 0.09 deleterious(0.04) benign(0.354) TCGA-CA-6717-01 18 6985533 6985533 G A LAMA1 Missense_Mutation p.A1830V 0.20 tolerated(0.43) benign(0.049) TCGA-CA-6717-01 18 70205515 70205515 G A CBLN2 Missense_Mutation p.L191F 0.15 tolerated(0.57) benign(0.012) TCGA-CA-6717-01 18 7034596 7034596 A C LAMA1 Missense_Mutation p.F645V 0.10 deleterious(0) possibly_damaging(0.904) TCGA-CA-6717-01 18 7036008 7036008 G A LAMA1 Missense_Mutation p.S606L 0.18 tolerated(0.46) benign(0.01) TCGA-CA-6717-01 18 7040179 7040179 G A LAMA1 Missense_Mutation p.R440C 0.11 deleterious(0) probably_damaging(0.927) TCGA-CA-6717-01 18 7049103 7049103 C T LAMA1 Missense_Mutation p.E248K 0.12 deleterious(0.02) benign(0.155) TCGA-CA-6717-01 18 72913615 72913615 G A ZADH2 Missense_Mutation p.S297F 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 18 73001557 73001557 C A TSHZ1 3'UTR 0.29 TCGA-CA-6717-01 18 73130753 73130753 C A SMIM21 Missense_Mutation p.S83I 0.18 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-CA-6717-01 18 74593413 74593413 G T ZNF236 Missense_Mutation p.E452D 0.23 tolerated(0.56) benign(0.005) TCGA-CA-6717-01 18 76755050 76755050 T C SALL3 Missense_Mutation p.L1020S 0.14 deleterious(0) benign(0.039) TCGA-CA-6717-01 18 8069839 8069839 C T PTPRM Nonsense_Mutation p.R430* 0.09 TCGA-CA-6717-01 18 8253385 8253385 G T PTPRM Missense_Mutation p.E909D 0.12 tolerated(0.26) benign(0.182) TCGA-CA-6717-01 18 8376477 8376477 C T PTPRM Missense_Mutation p.T1115I 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 18 8813132 8813132 G T SOGA2 Missense_Mutation p.K920N 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 18 9211581 9211581 G T ANKRD12 Splice_Site p.X151_splice 0.13 TCGA-CA-6717-01 18 9517054 9517054 A C RALBP1 Missense_Mutation p.K152N 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 18 9577173 9577173 A G PPP4R1 Missense_Mutation p.F312S 0.10 deleterious(0.02) possibly_damaging(0.873) TCGA-CA-6717-01 18 9792158 9792158 T G RAB31 Missense_Mutation p.F43V 0.11 deleterious(0) possibly_damaging(0.849) TCGA-CA-6717-01 18 9887150 9887150 C T TXNDC2 Missense_Mutation p.A225V 0.28 tolerated(0.85) benign(0.123) TCGA-CA-6717-01 18 9936135 9936135 G A VAPA Silent p.P87P 0.07 TCGA-CA-6717-01 19 10089621 10089621 T G COL5A3 Missense_Mutation p.E970D 0.26 unknown(0) TCGA-CA-6717-01 19 10114728 10114728 C T COL5A3 Missense_Mutation p.A230T 0.32 unknown(0) TCGA-CA-6717-01 19 1020786 1020786 G T TMEM259 Missense_Mutation p.F70L 0.33 tolerated(0.07) possibly_damaging(0.449) TCGA-CA-6717-01 19 10267129 10267129 T C DNMT1 Missense_Mutation p.N446S 0.10 deleterious(0) possibly_damaging(0.783) TCGA-CA-6717-01 19 10335160 10335160 C T S1PR2 Missense_Mutation p.G141D 0.26 tolerated(1) benign(0.058) TCGA-CA-6717-01 19 10398870 10398870 T C ICAM4 3'UTR 0.29 TCGA-CA-6717-01 19 10473232 10473232 C T TYK2 Missense_Mutation p.R490H 0.14 deleterious(0.05) possibly_damaging(0.721) TCGA-CA-6717-01 19 10574588 10574588 C T PDE4A Silent p.R621R 0.16 TCGA-CA-6717-01 19 1058728 1058728 G T ABCA7 Missense_Mutation p.R1754L 0.12 deleterious(0.01) benign(0.012) TCGA-CA-6717-01 19 1080697 1080697 C T HMHA1 Silent p.F659F 0.28 TCGA-CA-6717-01 19 1082936 1082936 G A HMHA1 Missense_Mutation p.R888Q 0.21 tolerated(0.19) benign(0.18) TCGA-CA-6717-01 19 1105498 1105498 T C GPX4 Missense_Mutation p.F105L 0.14 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 19 11145786 11145786 T C SMARCA4 Missense_Mutation p.L1383P 0.10 probably_damaging(0.999) TCGA-CA-6717-01 19 11217318 11217318 G A LDLR Missense_Mutation p.E258K 0.27 tolerated(0.55) benign(0.118) TCGA-CA-6717-01 19 11363599 11363599 A G DOCK6 Silent p.F56F 0.15 TCGA-CA-6717-01 19 11417331 11417331 G A TSPAN16 Missense_Mutation p.E168K 0.27 deleterious(0.05) possibly_damaging(0.813) TCGA-CA-6717-01 19 11436251 11436251 G T RAB3D Missense_Mutation p.F161L 0.27 deleterious(0) possibly_damaging(0.73) TCGA-CA-6717-01 19 11486385 11486385 G A SWSAP1 Missense_Mutation p.R128Q 0.17 tolerated(0.07) benign(0.109) TCGA-CA-6717-01 19 11508212 11508212 C T RGL3 Missense_Mutation p.R609Q 0.33 tolerated(0.55) unknown(0) TCGA-CA-6717-01 19 11548908 11548908 G A PRKCSH Missense_Mutation p.E105K 0.19 deleterious(0) benign(0.176) TCGA-CA-6717-01 19 11577526 11577526 G A ELAVL3 Silent p.I42I 0.28 TCGA-CA-6717-01 19 11651993 11651993 G T CNN1 Missense_Mutation p.D56Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 19 11660524 11660524 C A CNN1 Missense_Mutation p.P270T 0.18 deleterious(0.02) benign(0.072) TCGA-CA-6717-01 19 11833651 11833651 C A ZNF823 Missense_Mutation p.S233I 0.12 tolerated(0.06) probably_damaging(0.923) TCGA-CA-6717-01 19 11917124 11917124 G A ZNF491 Missense_Mutation p.R119Q 0.18 tolerated(0.98) benign(0.096) TCGA-CA-6717-01 19 11977385 11977385 A T ZNF439 Missense_Mutation p.E70V 0.08 deleterious(0.01) benign(0.227) TCGA-CA-6717-01 19 11978669 11978669 G T ZNF439 Missense_Mutation p.R262I 0.31 tolerated(0.06) probably_damaging(0.963) TCGA-CA-6717-01 19 11978996 11978996 G T ZNF439 Missense_Mutation p.R371I 0.20 tolerated(0.38) benign(0.035) TCGA-CA-6717-01 19 12059564 12059564 G T ZNF700 Missense_Mutation p.R242I 0.13 tolerated(0.1) benign(0.428) TCGA-CA-6717-01 19 12089163 12089163 A C ZNF763 Missense_Mutation p.K145Q 0.11 deleterious(0.01) possibly_damaging(0.895) TCGA-CA-6717-01 19 12126543 12126543 G T ZNF433 Nonsense_Mutation p.S380* 0.31 TCGA-CA-6717-01 19 12155237 12155237 G A ZNF878 Missense_Mutation p.R327C 0.14 deleterious(0.01) benign(0.003) TCGA-CA-6717-01 19 12155397 12155397 A G ZNF878 Silent p.H273H 0.13 TCGA-CA-6717-01 19 12175679 12175679 A G ZNF844 5'UTR 0.11 TCGA-CA-6717-01 19 12243602 12243602 G A ZNF20 Nonsense_Mutation p.R467* 0.17 TCGA-CA-6717-01 19 12256527 12256527 C T ZNF625 Missense_Mutation p.R235Q 0.24 tolerated(0.55) benign(0.07) TCGA-CA-6717-01 19 12298667 12298667 C T ZNF136 Nonsense_Mutation p.R492* 0.32 TCGA-CA-6717-01 19 12433451 12433451 C A ZNF563 Missense_Mutation p.K26N 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 12460708 12460708 C A ZNF442 Missense_Mutation p.R564I 0.14 tolerated(0.06) possibly_damaging(0.859) TCGA-CA-6717-01 19 12461053 12461053 C T ZNF442 Missense_Mutation p.R449Q 0.18 tolerated(0.38) benign(0.007) TCGA-CA-6717-01 19 12461809 12461809 C T ZNF442 Missense_Mutation p.R197Q 0.15 tolerated(0.72) benign(0.037) TCGA-CA-6717-01 19 12461881 12461881 C A ZNF442 Missense_Mutation p.R173I 0.10 deleterious(0.04) benign(0.009) TCGA-CA-6717-01 19 12541247 12541247 C A ZNF443 Missense_Mutation p.R580I 0.16 tolerated(0.06) probably_damaging(0.918) TCGA-CA-6717-01 19 12541761 12541761 G A ZNF443 Nonsense_Mutation p.R409* 0.26 TCGA-CA-6717-01 19 12542084 12542084 C A ZNF443 Missense_Mutation p.R301I 0.33 deleterious(0.01) probably_damaging(0.959) TCGA-CA-6717-01 19 12574934 12574934 C T ZNF709 Missense_Mutation p.R601H 0.21 deleterious(0.03) possibly_damaging(0.662) TCGA-CA-6717-01 19 12575081 12575081 C A ZNF709 Missense_Mutation p.R552M 0.13 deleterious(0.02) possibly_damaging(0.819) TCGA-CA-6717-01 19 12575261 12575261 C T ZNF709 Missense_Mutation p.R492Q 0.20 tolerated(0.98) probably_damaging(0.995) TCGA-CA-6717-01 19 12637516 12637516 C A ZNF564 Missense_Mutation p.R469I 0.27 deleterious(0.03) possibly_damaging(0.856) TCGA-CA-6717-01 19 12637627 12637627 G T ZNF564 Missense_Mutation p.S432Y 0.26 tolerated(1) possibly_damaging(0.86) TCGA-CA-6717-01 19 12637936 12637936 C A ZNF564 Missense_Mutation p.R329I 0.10 deleterious(0.05) possibly_damaging(0.856) TCGA-CA-6717-01 19 12691492 12691492 C A ZNF490 Missense_Mutation p.R466I 0.31 tolerated(0.1) probably_damaging(0.922) TCGA-CA-6717-01 19 12692176 12692176 C T ZNF490 Missense_Mutation p.R238Q 0.13 tolerated(0.72) benign(0.196) TCGA-CA-6717-01 19 12739606 12739606 C A ZNF791 Missense_Mutation p.F421L 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6717-01 19 12841735 12841735 C T C19orf43 3'UTR 0.24 TCGA-CA-6717-01 19 12911037 12911037 A G PRDX2 Missense_Mutation p.S112P 0.12 deleterious(0) probably_damaging(0.922) TCGA-CA-6717-01 19 12958847 12958847 G T MAST1 Missense_Mutation p.E250D 0.35 tolerated(0.11) possibly_damaging(0.705) TCGA-CA-6717-01 19 13010622 13010622 C A GCDH 3'UTR 0.13 TCGA-CA-6717-01 19 13029071 13029071 C A SYCE2 Missense_Mutation p.E32D 0.15 tolerated_low_confidence(0.18) benign(0.065) TCGA-CA-6717-01 19 13226229 13226229 G A TRMT1 Nonsense_Mutation p.R169* 0.18 TCGA-CA-6717-01 19 13265043 13265043 C A IER2 3'UTR 0.11 TCGA-CA-6717-01 19 13368242 13368242 G T CACNA1A Silent p.I1504I 0.16 TCGA-CA-6717-01 19 13419037 13419037 C T CACNA1A Missense_Mutation p.V604I 0.13 possibly_damaging(0.899) TCGA-CA-6717-01 19 13423538 13423538 T C CACNA1A Missense_Mutation p.Y538C 0.10 probably_damaging(0.966) TCGA-CA-6717-01 19 13423567 13423567 G T CACNA1A Silent p.L528L 0.23 TCGA-CA-6717-01 19 13428050 13428050 G T CACNA1A Missense_Mutation p.F477L 0.21 possibly_damaging(0.682) TCGA-CA-6717-01 19 13862583 13862583 C T CCDC130 5'UTR 0.11 TCGA-CA-6717-01 19 14037513 14037513 G T CC2D1A Missense_Mutation p.R683L 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 14063999 14063999 A C DCAF15 Intron 0.26 TCGA-CA-6717-01 19 14139049 14139049 G T RLN3 Silent p.A11A 0.16 TCGA-CA-6717-01 19 14164746 14164746 T C PALM3 Missense_Mutation p.N565D 0.23 tolerated_low_confidence(0.07) benign(0.21) TCGA-CA-6717-01 19 14512562 14512562 C T CD97 Silent p.A391A 0.16 TCGA-CA-6717-01 19 14698463 14698463 G T CLEC17A Missense_Mutation p.E53D 0.07 tolerated_low_confidence(0.3) possibly_damaging(0.636) TCGA-CA-6717-01 19 14755064 14755064 G T EMR3 Silent p.V302V 0.15 TCGA-CA-6717-01 19 14829128 14829128 G T ZNF333 Missense_Mutation p.R330I 0.24 deleterious(0.02) benign(0.308) TCGA-CA-6717-01 19 1497805 1497805 C T REEP6 3'UTR 0.18 TCGA-CA-6717-01 19 15163079 15163079 C A CASP14 Missense_Mutation p.S6Y 0.09 deleterious(0) benign(0.077) TCGA-CA-6717-01 19 15166326 15166326 C T CASP14 Silent p.I202I 0.20 TCGA-CA-6717-01 19 15198367 15198367 C T OR1I1 Missense_Mutation p.A164V 0.20 tolerated(0.15) benign(0.067) TCGA-CA-6717-01 19 15198478 15198478 C T OR1I1 Missense_Mutation p.A201V 0.20 tolerated(0.45) benign(0.041) TCGA-CA-6717-01 19 15222463 15222463 C T SYDE1 Nonsense_Mutation p.R480* 0.31 TCGA-CA-6717-01 19 15224663 15224663 C T SYDE1 Silent p.F699F 0.25 TCGA-CA-6717-01 19 15227331 15227331 C A ILVBL Missense_Mutation p.D397Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 19 15276250 15276250 C T NOTCH3 Missense_Mutation p.R1915H 0.20 deleterious(0) possibly_damaging(0.697) TCGA-CA-6717-01 19 15547682 15547682 C T WIZ Missense_Mutation p.R155H 0.18 tolerated(0.12) possibly_damaging(0.548) TCGA-CA-6717-01 19 15565067 15565067 G C RASAL3 Missense_Mutation p.D724E 0.08 tolerated(0.4) benign(0.101) TCGA-CA-6717-01 19 15769319 15769319 G T CYP4F3 Missense_Mutation p.S423I 0.09 deleterious(0) benign(0.385) TCGA-CA-6717-01 19 15769578 15769578 G T CYP4F3 Missense_Mutation p.E452D 0.11 tolerated(0.5) benign(0.002) TCGA-CA-6717-01 19 15794547 15794547 T C CYP4F12 Missense_Mutation p.F298L 0.12 deleterious(0.03) possibly_damaging(0.856) TCGA-CA-6717-01 19 15905788 15905788 C A OR10H5 Silent p.L310L 0.23 TCGA-CA-6717-01 19 16279060 16279060 G T CIB3 Missense_Mutation p.F78L 0.16 deleterious(0.03) benign(0.214) TCGA-CA-6717-01 19 16317176 16317176 C T AP1M1 Missense_Mutation p.A75V 0.10 tolerated(0.17) benign(0.072) TCGA-CA-6717-01 19 16472587 16472587 T C EPS15L1 Intron 0.14 TCGA-CA-6717-01 19 16601353 16601353 G T CALR3 Missense_Mutation p.F74L 0.17 deleterious(0) possibly_damaging(0.638) TCGA-CA-6717-01 19 16612361 16612361 C T C19orf44 Missense_Mutation p.S253L 0.17 tolerated(0.1) benign(0.036) TCGA-CA-6717-01 19 16652796 16652796 G A CHERP Silent p.P28P 0.09 TCGA-CA-6717-01 19 16918932 16918932 C T NWD1 Silent p.F1424F 0.15 TCGA-CA-6717-01 19 16926103 16926103 A C NWD1 3'UTR 0.20 TCGA-CA-6717-01 19 17038912 17038912 T C CPAMD8 Missense_Mutation p.M1140V 0.09 tolerated(0.07) benign(0.002) TCGA-CA-6717-01 19 17339695 17339695 C A OCEL1 Missense_Mutation p.F252L 0.22 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 19 17476159 17476159 G A PLVAP Missense_Mutation p.A372V 0.30 tolerated(1) benign(0.007) TCGA-CA-6717-01 19 17487751 17487751 A G PLVAP Missense_Mutation p.F116S 0.13 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 19 17720891 17720891 G T UNC13A Missense_Mutation p.L1557I 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6717-01 19 1775249 1775249 C T ONECUT3 Silent p.I430I 0.09 TCGA-CA-6717-01 19 17759387 17759387 C T UNC13A Missense_Mutation p.E557K 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 19 17763469 17763469 C T UNC13A Silent p.E470E 0.27 TCGA-CA-6717-01 19 17768891 17768891 G T UNC13A Missense_Mutation p.F249L 0.09 tolerated_low_confidence(0.28) benign(0) TCGA-CA-6717-01 19 17945893 17945893 C A JAK3 Missense_Mutation p.E682D 0.23 tolerated(0.44) benign(0.209) TCGA-CA-6717-01 19 18085034 18085034 T C KCNN1 Missense_Mutation p.F113L 0.11 deleterious(0.03) benign(0.206) TCGA-CA-6717-01 19 18274116 18274116 A C PIK3R2 Missense_Mutation p.Q445P 0.16 deleterious(0) probably_damaging(0.963) TCGA-CA-6717-01 19 18284753 18284753 C A IFI30 Missense_Mutation p.F34L 0.28 tolerated_low_confidence(0.77) benign(0.002) TCGA-CA-6717-01 19 18329191 18329191 C T PDE4C Missense_Mutation p.D395N 0.30 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 19 18368662 18368662 T G KIAA1683 Missense_Mutation p.Q1144H 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 18375290 18375290 C T KIAA1683 Silent p.S1020S 0.16 TCGA-CA-6717-01 19 18731277 18731277 G A TMEM59L Silent p.P320P 0.14 TCGA-CA-6717-01 19 18778502 18778502 G T KLHL26 Missense_Mutation p.A99S 0.22 tolerated(0.91) benign(0.007) TCGA-CA-6717-01 19 18897349 18897349 G A COMP Missense_Mutation p.P416L 0.14 deleterious(0) benign(0.046) TCGA-CA-6717-01 19 18974986 18974986 G A UPF1 Missense_Mutation p.R928H 0.15 tolerated(0.32) benign(0.008) TCGA-CA-6717-01 19 19105982 19105982 G T SUGP2 Silent p.L1033L 0.11 TCGA-CA-6717-01 19 19112469 19112469 G A SUGP2 Nonsense_Mutation p.R982* 0.12 TCGA-CA-6717-01 19 19335228 19335228 C T NCAN Missense_Mutation p.A255V 0.23 tolerated(0.09) benign(0.166) TCGA-CA-6717-01 19 19337388 19337388 A T NCAN Missense_Mutation p.E389V 0.24 deleterious(0) possibly_damaging(0.782) TCGA-CA-6717-01 19 19338732 19338732 C T NCAN Missense_Mutation p.T768I 0.27 tolerated(0.11) benign(0.216) TCGA-CA-6717-01 19 19414195 19414195 C A SUGP1 Missense_Mutation p.R242I 0.10 deleterious(0) possibly_damaging(0.895) TCGA-CA-6717-01 19 19768193 19768193 G T ATP13A1 Missense_Mutation p.F234L 0.13 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 19 19823207 19823207 G A ZNF14 Nonsense_Mutation p.R295* 0.18 TCGA-CA-6717-01 19 20002306 20002306 G T ZNF253 Missense_Mutation p.D84Y 0.08 deleterious(0.02) probably_damaging(0.956) TCGA-CA-6717-01 19 20002715 20002715 G T ZNF253 Missense_Mutation p.R220I 0.19 tolerated(0.43) benign(0.045) TCGA-CA-6717-01 19 20045341 20045341 A G ZNF93 Missense_Mutation p.K526R 0.38 tolerated(0.43) benign(0.024) TCGA-CA-6717-01 19 20117978 20117978 T C ZNF682 Silent p.L111L 0.14 TCGA-CA-6717-01 19 20135150 20135150 G T ZNF682 Missense_Mutation p.F13L 0.11 deleterious(0.01) possibly_damaging(0.787) TCGA-CA-6717-01 19 20228746 20228746 G T ZNF90 Missense_Mutation p.R128I 0.12 tolerated(0.24) possibly_damaging(0.606) TCGA-CA-6717-01 19 20229196 20229196 T G ZNF90 Missense_Mutation p.I278S 0.11 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 19 20230162 20230162 A C ZNF90 Missense_Mutation p.N600T 0.14 tolerated_low_confidence(0.07) benign(0.006) TCGA-CA-6717-01 19 20308953 20308953 T G ZNF486 3'UTR 0.27 TCGA-CA-6717-01 19 2037746 2037746 T C MKNK2 3'UTR 0.11 TCGA-CA-6717-01 19 20808314 20808314 A G ZNF626 Silent p.C123C 0.09 TCGA-CA-6717-01 19 21117757 21117757 A G ZNF85 Missense_Mutation p.I45V 0.11 tolerated(0.07) benign(0.226) TCGA-CA-6717-01 19 21132335 21132335 G T ZNF85 Nonsense_Mutation p.E339* 0.15 TCGA-CA-6717-01 19 21132974 21132974 A G ZNF85 Missense_Mutation p.N552D 0.12 tolerated(0.46) benign(0.135) TCGA-CA-6717-01 19 2120980 2120980 G A AP3D1 Silent p.F454F 0.22 TCGA-CA-6717-01 19 21239788 21239788 G T ZNF430 Missense_Mutation p.R225I 0.11 tolerated(0.31) benign(0.002) TCGA-CA-6717-01 19 21300358 21300358 C A ZNF714 Missense_Mutation p.F296L 0.09 tolerated(0.37) benign(0.152) TCGA-CA-6717-01 19 21365550 21365550 C T ZNF431 Silent p.S148S 0.18 TCGA-CA-6717-01 19 21366187 21366187 A C ZNF431 Missense_Mutation p.K361Q 0.24 tolerated(0.24) benign(0.438) TCGA-CA-6717-01 19 21607862 21607862 C T ZNF493 3'UTR 0.22 TCGA-CA-6717-01 19 21607940 21607940 C A ZNF493 3'UTR 0.16 TCGA-CA-6717-01 19 21608797 21608797 A C ZNF493 3'UTR 0.16 TCGA-CA-6717-01 19 21609681 21609681 A G ZNF493 3'UTR 0.13 TCGA-CA-6717-01 19 21609861 21609861 T C ZNF493 3'UTR 0.08 TCGA-CA-6717-01 19 21720105 21720105 A T ZNF429 Missense_Mutation p.K417I 0.16 tolerated(0.41) possibly_damaging(0.904) TCGA-CA-6717-01 19 21909852 21909852 C A ZNF100 Missense_Mutation p.R421I 0.15 tolerated(0.55) benign(0.044) TCGA-CA-6717-01 19 21909934 21909934 T G ZNF100 Missense_Mutation p.S394R 0.18 deleterious(0) possibly_damaging(0.761) TCGA-CA-6717-01 19 21910601 21910601 A C ZNF100 Silent p.T171T 0.19 TCGA-CA-6717-01 19 2193771 2193771 A G DOT1L Missense_Mutation p.K193E 0.12 tolerated(0.08) probably_damaging(0.945) TCGA-CA-6717-01 19 21991641 21991641 A G ZNF43 Missense_Mutation p.C400R 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 21991727 21991727 T G ZNF43 Missense_Mutation p.K371T 0.15 deleterious(0.04) probably_damaging(1) TCGA-CA-6717-01 19 22156803 22156803 C T ZNF208 Missense_Mutation p.E345K 0.33 tolerated(0.07) possibly_damaging(0.6) TCGA-CA-6717-01 19 22255648 22255648 C A ZNF257 Missense_Mutation p.S14Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 19 22270998 22270998 A C ZNF257 Missense_Mutation p.K149T 0.12 tolerated(0.09) benign(0.091) TCGA-CA-6717-01 19 22364288 22364288 C A ZNF676 Missense_Mutation p.E77D 0.12 tolerated(0.24) benign(0.011) TCGA-CA-6717-01 19 22942365 22942365 C A ZNF99 Missense_Mutation p.D116Y 0.22 tolerated(0.09) possibly_damaging(0.782) TCGA-CA-6717-01 19 22942434 22942434 C A ZNF99 Missense_Mutation p.D93Y 0.20 tolerated(0.08) benign(0.011) TCGA-CA-6717-01 19 22952784 22952784 T G ZNF99 Intron 0.10 TCGA-CA-6717-01 19 2343247 2343247 T C SPPL2B RNA 0.16 TCGA-CA-6717-01 19 23542358 23542358 T G ZNF91 Missense_Mutation p.K1141N 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-CA-6717-01 19 23543698 23543698 A G ZNF91 Missense_Mutation p.F695L 0.10 deleterious(0.01) probably_damaging(0.969) TCGA-CA-6717-01 19 23837458 23837458 C A ZNF675 Missense_Mutation p.D93Y 0.18 deleterious(0.04) possibly_damaging(0.84) TCGA-CA-6717-01 19 23926802 23926802 C T ZNF681 Missense_Mutation p.R517Q 0.21 tolerated(0.84) possibly_damaging(0.77) TCGA-CA-6717-01 19 23927832 23927832 C A ZNF681 Nonsense_Mutation p.E174* 0.13 TCGA-CA-6717-01 19 24310499 24310499 G T ZNF254 Missense_Mutation p.R566I 0.22 tolerated(0.4) benign(0.014) TCGA-CA-6717-01 19 2854030 2854030 C A ZNF555 3'UTR 0.37 TCGA-CA-6717-01 19 2877779 2877779 C T ZNF556 Nonsense_Mutation p.R275* 0.28 TCGA-CA-6717-01 19 288137 288137 G A PPAP2C Silent p.N50N 0.10 TCGA-CA-6717-01 19 2936670 2936670 T G ZNF77 Missense_Mutation p.S55R 0.10 tolerated(0.75) benign(0.002) TCGA-CA-6717-01 19 2978281 2978281 C T TLE6 Missense_Mutation p.S17L 0.13 deleterious(0.02) possibly_damaging(0.776) TCGA-CA-6717-01 19 2993570 2993570 C G TLE6 Missense_Mutation p.F509L 0.23 deleterious(0.01) benign(0.037) TCGA-CA-6717-01 19 3005813 3005813 C T TLE2 Missense_Mutation p.A552T 0.17 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 19 30199254 30199254 C T C19orf12 Missense_Mutation p.A34T 0.14 tolerated(0.07) probably_damaging(0.944) TCGA-CA-6717-01 19 31039693 31039693 C T ZNF536 Missense_Mutation p.S1056L 0.30 tolerated_low_confidence(0.25) benign(0.005) TCGA-CA-6717-01 19 31767502 31767502 T G TSHZ3 Missense_Mutation p.K1066T 0.17 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 19 32873647 32873647 G A ZNF507 Silent p.K840K 0.19 TCGA-CA-6717-01 19 32928129 32928129 T G DPY19L3 Missense_Mutation p.I160M 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 19 33078081 33078081 T G PDCD5 Intron 0.09 TCGA-CA-6717-01 19 33140604 33140604 T C ANKRD27 Missense_Mutation p.Q66R 0.13 tolerated(0.44) benign(0.069) TCGA-CA-6717-01 19 33168492 33168492 G A RGS9BP 3'UTR 0.11 TCGA-CA-6717-01 19 33263749 33263749 C A TDRD12 Missense_Mutation p.T319K 0.10 tolerated(0.7) benign(0.003) TCGA-CA-6717-01 19 33390788 33390788 T G CEP89 Missense_Mutation p.Q617P 0.09 deleterious(0) possibly_damaging(0.504) TCGA-CA-6717-01 19 33417891 33417891 C A CEP89 Splice_Site p.X344_splice 0.10 TCGA-CA-6717-01 19 33639753 33639753 G A WDR88 Missense_Mutation p.D206N 0.24 deleterious(0.04) probably_damaging(0.995) TCGA-CA-6717-01 19 33651378 33651378 A C WDR88 Missense_Mutation p.E352D 0.09 tolerated(0.23) benign(0.147) TCGA-CA-6717-01 19 34263626 34263626 C T CHST8 Silent p.F311F 0.15 TCGA-CA-6717-01 19 34710473 34710473 T A LSM14A Nonsense_Mutation p.L320* 0.16 TCGA-CA-6717-01 19 35251318 35251318 T - ZNF599 Frame_Shift_Del p.I130Ffs*6 0.20 TCGA-CA-6717-01 19 35449013 35449013 C A ZNF792 Missense_Mutation p.K582N 0.15 deleterious(0) possibly_damaging(0.701) TCGA-CA-6717-01 19 35613723 35613723 T C FXYD3 Missense_Mutation p.M108T 0.22 deleterious(0.04) benign(0.003) TCGA-CA-6717-01 19 35622891 35622891 G A LGI4 Missense_Mutation p.R124C 0.15 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 19 35758852 35758852 A C LSR 3'UTR 0.23 TCGA-CA-6717-01 19 35823740 35823740 G A CD22 Missense_Mutation p.V109M 0.16 deleterious(0) probably_damaging(0.916) TCGA-CA-6717-01 19 35827012 35827012 G A CD22 Silent p.L162L 0.19 TCGA-CA-6717-01 19 35832836 35832836 G A CD22 Missense_Mutation p.G668D 0.16 tolerated(0.1) benign(0.12) TCGA-CA-6717-01 19 35837480 35837480 G T CD22 Missense_Mutation p.E808D 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 19 35850758 35850758 A G FFAR3 Silent p.R322R 0.07 TCGA-CA-6717-01 19 35863227 35863227 A G GPR42 Silent p.R322R 0.15 TCGA-CA-6717-01 19 36000865 36000865 T G DMKN Splice_Site p.X330_splice 0.13 TCGA-CA-6717-01 19 36049959 36049959 C A ATP4A Missense_Mutation p.M397I 0.17 deleterious(0) probably_damaging(0.975) TCGA-CA-6717-01 19 36050005 36050005 G A ATP4A Missense_Mutation p.S382L 0.16 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 19 36168744 36168744 G A UPK1A Missense_Mutation p.D227N 0.21 tolerated(1) benign(0.003) TCGA-CA-6717-01 19 36234962 36234962 A G U2AF1L4 Intron 0.18 TCGA-CA-6717-01 19 36279184 36279184 G A ARHGAP33 Silent p.P1078P 0.18 TCGA-CA-6717-01 19 36342722 36342722 C T NPHS1 Silent p.T6T 0.17 TCGA-CA-6717-01 19 36360506 36360506 G T APLP1 Intron 0.25 TCGA-CA-6717-01 19 36361796 36361796 A C APLP1 Splice_Site p.X98_splice 0.11 TCGA-CA-6717-01 19 36369805 36369805 T C APLP1 Missense_Mutation p.V555A 0.14 tolerated(0.8) benign(0.011) TCGA-CA-6717-01 19 36508780 36508780 G A CLIP3 Missense_Mutation p.R433C 0.24 deleterious(0) probably_damaging(0.966) TCGA-CA-6717-01 19 36728676 36728676 A C ZNF146 3'UTR 0.11 TCGA-CA-6717-01 19 36858832 36858832 G T ZFP14 5'UTR 0.10 TCGA-CA-6717-01 19 37006408 37006408 A C ZNF260 5'UTR 0.18 TCGA-CA-6717-01 19 37038976 37038976 G A ZNF529 Missense_Mutation p.R162W 0.10 deleterious(0.02) benign(0.009) TCGA-CA-6717-01 19 37210696 37210696 G T ZNF567 Missense_Mutation p.R326I 0.21 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 19 37310005 37310005 C T ZNF790 Missense_Mutation p.R414Q 0.11 deleterious(0.03) benign(0.013) TCGA-CA-6717-01 19 37370459 37370459 T G ZNF345 3'UTR 0.32 TCGA-CA-6717-01 19 37440780 37440780 G A ZNF568 Missense_Mutation p.R242Q 0.19 deleterious(0.01) benign(0.035) TCGA-CA-6717-01 19 37441670 37441670 T C ZNF568 Missense_Mutation p.F539L 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6717-01 19 37441716 37441716 G A ZNF568 Missense_Mutation p.G554E 0.16 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 19 37643596 37643596 C A ZNF585A Missense_Mutation p.R347I 0.20 deleterious(0) probably_damaging(0.951) TCGA-CA-6717-01 19 37644504 37644504 C A ZNF585A Missense_Mutation p.E44D 0.34 deleterious(0.05) possibly_damaging(0.524) TCGA-CA-6717-01 19 37879618 37879618 G A ZNF527 Missense_Mutation p.E223K 0.10 tolerated(0.07) benign(0.016) TCGA-CA-6717-01 19 37903356 37903356 C A ZNF569 3'UTR 0.38 TCGA-CA-6717-01 19 37903907 37903907 T G ZNF569 Missense_Mutation p.E551D 0.10 tolerated(0.18) probably_damaging(0.994) TCGA-CA-6717-01 19 38028009 38028009 T C ZNF793 Missense_Mutation p.L150S 0.22 tolerated(0.33) benign(0.02) TCGA-CA-6717-01 19 38055932 38055932 C T ZNF571 Silent p.E466E 0.09 TCGA-CA-6717-01 19 38057032 38057032 C A ZNF571 Nonsense_Mutation p.E100* 0.15 TCGA-CA-6717-01 19 38057116 38057116 T G ZNF571 Missense_Mutation p.N72H 0.07 tolerated(0.57) benign(0.055) TCGA-CA-6717-01 19 38089285 38089285 G T ZNF540 5'UTR 0.14 TCGA-CA-6717-01 19 38102674 38102674 C A ZNF540 Missense_Mutation p.H165N 0.21 tolerated(0.09) benign(0) TCGA-CA-6717-01 19 38103157 38103157 C T ZNF540 Missense_Mutation p.P326S 0.32 deleterious(0.03) benign(0.017) TCGA-CA-6717-01 19 38125985 38125985 C A ZFP30 Missense_Mutation p.R486I 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 19 38126909 38126909 C A ZFP30 Missense_Mutation p.R178I 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 19 38127119 38127119 C A ZFP30 Missense_Mutation p.R108I 0.19 tolerated(0.35) benign(0.1) TCGA-CA-6717-01 19 38134177 38134177 C T ZFP30 Missense_Mutation p.R75K 0.23 tolerated(0.93) benign(0.009) TCGA-CA-6717-01 19 38160389 38160389 C A ZNF781 Nonsense_Mutation p.E221* 0.20 TCGA-CA-6717-01 19 38160892 38160892 C T ZNF781 Missense_Mutation p.R53Q 0.16 tolerated(0.08) possibly_damaging(0.86) TCGA-CA-6717-01 19 38161023 38161023 C A ZNF781 Missense_Mutation p.K9N 0.10 deleterious_low_confidence(0) benign(0.403) TCGA-CA-6717-01 19 38190042 38190042 A C ZNF607 Missense_Mutation p.I330M 0.19 deleterious(0.04) probably_damaging(0.942) TCGA-CA-6717-01 19 38230183 38230183 T C ZNF573 Missense_Mutation p.Q403R 0.16 tolerated(0.6) probably_damaging(0.954) TCGA-CA-6717-01 19 3827605 3827605 G A ZFR2 Missense_Mutation p.A300V 0.12 deleterious(0.04) possibly_damaging(0.581) TCGA-CA-6717-01 19 3831527 3831527 G A ZFR2 Missense_Mutation p.S209L 0.23 tolerated(0.11) possibly_damaging(0.598) TCGA-CA-6717-01 19 38376208 38376208 T G WDR87 Missense_Mutation p.E2662D 0.25 unknown(0) TCGA-CA-6717-01 19 38378311 38378311 C A WDR87 Missense_Mutation p.K1961N 0.09 possibly_damaging(0.878) TCGA-CA-6717-01 19 38378721 38378721 C A WDR87 Nonsense_Mutation p.E1825* 0.13 TCGA-CA-6717-01 19 38379163 38379163 C A WDR87 Missense_Mutation p.E1677D 0.16 probably_damaging(0.991) TCGA-CA-6717-01 19 38382199 38382199 T G WDR87 Missense_Mutation p.K1090N 0.25 probably_damaging(0.942) TCGA-CA-6717-01 19 38383626 38383626 C T WDR87 Missense_Mutation p.R867Q 0.23 possibly_damaging(0.534) TCGA-CA-6717-01 19 38385796 38385796 C T WDR87 Missense_Mutation p.G144S 0.14 probably_damaging(0.999) TCGA-CA-6717-01 19 38610393 38610393 C T SIPA1L3 Silent p.C913C 0.19 TCGA-CA-6717-01 19 38877374 38877374 T C GGN Silent p.P176P 0.18 TCGA-CA-6717-01 19 38939090 38939090 T C RYR1 Missense_Mutation p.V299A 0.20 benign(0.18) TCGA-CA-6717-01 19 38959644 38959644 C T RYR1 Silent p.R1140R 0.15 TCGA-CA-6717-01 19 38996496 38996496 T C RYR1 Silent p.I2817I 0.13 TCGA-CA-6717-01 19 39002912 39002912 C T RYR1 Silent p.I3087I 0.17 TCGA-CA-6717-01 19 39398369 39398369 G T NFKBIB Intron 0.15 TCGA-CA-6717-01 19 3942148 3942148 G A NMRK2 Silent p.S190S 0.08 TCGA-CA-6717-01 19 39693627 39693627 T C SYCN Nonstop_Mutation p.*135Wext*? 0.18 TCGA-CA-6717-01 19 39735447 39735447 T C IFNL3 Missense_Mutation p.K54R 0.17 tolerated(0.16) benign(0.008) TCGA-CA-6717-01 19 39735597 39735597 T G IFNL3 Missense_Mutation p.D4A 0.12 tolerated(1) benign(0) TCGA-CA-6717-01 19 39787185 39787185 C A IFNL1 Missense_Mutation p.L42M 0.19 deleterious(0.02) probably_damaging(0.936) TCGA-CA-6717-01 19 39873923 39873923 C T SAMD4B Missense_Mutation p.A683V 0.11 deleterious(0) probably_damaging(0.927) TCGA-CA-6717-01 19 39879244 39879244 T C PAF1 Silent p.R271R 0.13 TCGA-CA-6717-01 19 39914225 39914225 G A PLEKHG2 Missense_Mutation p.R844H 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6717-01 19 40197871 40197871 A C LGALS14 Missense_Mutation p.D78A 0.12 deleterious(0) possibly_damaging(0.904) TCGA-CA-6717-01 19 40318274 40318274 C T DYRK1B Missense_Mutation p.R277H 0.29 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 40325184 40325184 C A FBL Missense_Mutation p.K320N 0.21 deleterious_low_confidence(0) possibly_damaging(0.46) TCGA-CA-6717-01 19 40366460 40366460 C T FCGBP Missense_Mutation p.D4592N 0.18 possibly_damaging(0.771) TCGA-CA-6717-01 19 40373951 40373951 T C FCGBP Missense_Mutation p.T4043A 0.15 benign(0.044) TCGA-CA-6717-01 19 40411774 40411774 C T FCGBP Missense_Mutation p.R1285Q 0.20 possibly_damaging(0.464) TCGA-CA-6717-01 19 40519837 40519837 G T ZNF546 Missense_Mutation p.K220N 0.11 tolerated(0.54) benign(0.403) TCGA-CA-6717-01 19 40520379 40520379 T C ZNF546 Missense_Mutation p.V401A 0.26 tolerated(1) benign(0.418) TCGA-CA-6717-01 19 40520979 40520979 A C ZNF546 Missense_Mutation p.K601T 0.12 deleterious(0.02) possibly_damaging(0.728) TCGA-CA-6717-01 19 40521172 40521172 C T ZNF546 Silent p.Y665Y 0.10 TCGA-CA-6717-01 19 40521297 40521297 G A ZNF546 Missense_Mutation p.R707Q 0.13 tolerated(0.63) possibly_damaging(0.553) TCGA-CA-6717-01 19 40580707 40580707 G A ZNF780A Nonsense_Mutation p.R549* 0.22 TCGA-CA-6717-01 19 40771191 40771191 G A AKT2 5'UTR 0.17 TCGA-CA-6717-01 19 40947649 40947649 C T SERTAD3 Silent p.Q113Q 0.16 TCGA-CA-6717-01 19 41083506 41083506 A G SHKBP1 Missense_Mutation p.N77S 0.12 deleterious(0.05) possibly_damaging(0.734) TCGA-CA-6717-01 19 41112369 41112369 G A LTBP4 Missense_Mutation p.G377S 0.19 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 19 41114436 41114436 C T LTBP4 Silent p.P518P 0.12 TCGA-CA-6717-01 19 41118978 41118978 C T LTBP4 Silent p.D836D 0.10 TCGA-CA-6717-01 19 41384822 41384822 G A CYP2A7 Missense_Mutation p.S225L 0.19 tolerated(0.2) probably_damaging(0.929) TCGA-CA-6717-01 19 41447351 41447351 G A AC092071.1 5'Flank 0.09 TCGA-CA-6717-01 19 41455062 41455062 G T AC092071.1 3'Flank 0.19 TCGA-CA-6717-01 19 41601774 41601774 C T CYP2A13 Silent p.I471I 0.12 TCGA-CA-6717-01 19 41736882 41736882 G T AXL Missense_Mutation p.K199N 0.17 deleterious(0.03) benign(0.161) TCGA-CA-6717-01 19 41798299 41798299 C T HNRNPUL1 Silent p.F383F 0.11 TCGA-CA-6717-01 19 42132146 42132146 C A CEACAM4 Missense_Mutation p.D85Y 0.16 deleterious(0.02) benign(0.425) TCGA-CA-6717-01 19 42219138 42219138 C T CEACAM5 Missense_Mutation p.R225C 0.10 tolerated(0.07) benign(0.274) TCGA-CA-6717-01 19 42342020 42342020 T G LYPD4 Missense_Mutation p.K176T 0.12 tolerated(0.16) benign(0.355) TCGA-CA-6717-01 19 42352907 42352907 G A DMRTC2 Silent p.S164S 0.31 TCGA-CA-6717-01 19 42474416 42474416 G T ATP1A3 Silent p.I834I 0.12 TCGA-CA-6717-01 19 42482197 42482197 T C ATP1A3 Missense_Mutation p.I625V 0.10 tolerated(0.1) probably_damaging(0.946) TCGA-CA-6717-01 19 42486144 42486144 T C ATP1A3 Missense_Mutation p.T383A 0.17 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 19 42510004 42510004 C T GRIK5 Missense_Mutation p.V712I 0.20 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 19 42510054 42510054 G A GRIK5 Missense_Mutation p.S695L 0.07 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 19 42569894 42569894 A C GRIK5 Missense_Mutation p.I10S 0.16 tolerated(0.12) benign(0.051) TCGA-CA-6717-01 19 42754580 42754580 C T ERF Missense_Mutation p.E54K 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 19 42862972 42862972 C T MEGF8 Missense_Mutation p.R1670W 0.14 tolerated_low_confidence(0.22) benign(0.046) TCGA-CA-6717-01 19 42931171 42931171 C A LIPE Missense_Mutation p.G44V 0.11 tolerated_low_confidence(0.1) benign(0.357) TCGA-CA-6717-01 19 43237070 43237070 C T PSG3 Missense_Mutation p.S192N 0.14 deleterious(0.03) benign(0.139) TCGA-CA-6717-01 19 43262410 43262410 G T PSG8 Silent p.I151I 0.15 TCGA-CA-6717-01 19 4328773 4328773 T G STAP2 Missense_Mutation p.Q163H 0.10 deleterious(0.01) possibly_damaging(0.832) TCGA-CA-6717-01 19 43358408 43358408 C T PSG10P RNA 0.26 TCGA-CA-6717-01 19 43406516 43406516 G T PSG6 3'Flank 0.44 TCGA-CA-6717-01 19 43439670 43439670 A C PSG7 Missense_Mutation p.S106A 0.24 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 19 43762040 43762040 C T PSG9 Intron 0.34 TCGA-CA-6717-01 19 43772239 43772239 G A PSG9 Missense_Mutation p.P43S 0.08 tolerated(0.55) benign(0.314) TCGA-CA-6717-01 19 4409625 4409625 G A CHAF1A Missense_Mutation p.E277K 0.09 deleterious(0.02) unknown(0) TCGA-CA-6717-01 19 44116369 44116369 G T SRRM5 Missense_Mutation p.L32F 0.21 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 19 44223792 44223792 T C IRGC Missense_Mutation p.F361S 0.13 tolerated(0.06) benign(0.223) TCGA-CA-6717-01 19 44351686 44351686 A C ZNF283 Missense_Mutation p.K311N 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 19 44377011 44377011 G T ZNF404 Missense_Mutation p.S452Y 0.11 tolerated(0.16) probably_damaging(0.994) TCGA-CA-6717-01 19 44417740 44417740 T C ZNF45 Silent p.E616E 0.12 TCGA-CA-6717-01 19 44418339 44418339 G T ZNF45 Missense_Mutation p.Q417K 0.23 tolerated(1) possibly_damaging(0.575) TCGA-CA-6717-01 19 44470916 44470916 C A ZNF221 Missense_Mutation p.S421Y 0.18 deleterious(0) possibly_damaging(0.485) TCGA-CA-6717-01 19 44501644 44501644 G A ZNF155 3'UTR 0.40 TCGA-CA-6717-01 19 44514854 44514854 G T ZNF230 Missense_Mutation p.E221D 0.17 tolerated(0.05) possibly_damaging(0.868) TCGA-CA-6717-01 19 44570290 44570290 C A ZNF223 Silent p.I103I 0.08 TCGA-CA-6717-01 19 44570484 44570484 A C ZNF223 Missense_Mutation p.Q168P 0.15 tolerated(0.05) benign(0.033) TCGA-CA-6717-01 19 44570597 44570597 T C ZNF223 Missense_Mutation p.C206R 0.11 tolerated(0.09) probably_damaging(1) TCGA-CA-6717-01 19 44589980 44589980 T A ZNF284 Missense_Mutation p.S117T 0.32 tolerated(0.06) benign(0.08) TCGA-CA-6717-01 19 44612400 44612400 G A ZNF224 Missense_Mutation p.R696Q 0.18 tolerated(1) benign(0) TCGA-CA-6717-01 19 44635354 44635354 G A ZNF225 Missense_Mutation p.R196K 0.09 tolerated(0.12) benign(0.05) TCGA-CA-6717-01 19 44635633 44635633 A C ZNF225 Missense_Mutation p.K289T 0.24 tolerated(0.13) benign(0.325) TCGA-CA-6717-01 19 44636588 44636588 G T ZNF225 Missense_Mutation p.E607D 0.09 tolerated(0.22) benign(0.006) TCGA-CA-6717-01 19 44661008 44661008 G T ZNF234 Missense_Mutation p.R280I 0.15 tolerated(0.14) probably_damaging(0.941) TCGA-CA-6717-01 19 44674224 44674224 A C ZNF226 5'UTR 0.09 TCGA-CA-6717-01 19 44679743 44679743 G T ZNF226 Missense_Mutation p.D110Y 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 19 44833165 44833165 T G ZNF112 Missense_Mutation p.E388A 0.13 deleterious(0.02) benign(0.445) TCGA-CA-6717-01 19 44833231 44833231 T G ZNF112 Missense_Mutation p.K366T 0.16 deleterious(0) possibly_damaging(0.907) TCGA-CA-6717-01 19 44932374 44932374 C A ZNF229 3'UTR 0.25 TCGA-CA-6717-01 19 44933050 44933050 C A ZNF229 Missense_Mutation p.G636C 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-CA-6717-01 19 44933097 44933097 C T ZNF229 Missense_Mutation p.R620K 0.32 tolerated(0.11) possibly_damaging(0.45) TCGA-CA-6717-01 19 44933607 44933607 T A ZNF229 Missense_Mutation p.K450I 0.13 tolerated(0.29) possibly_damaging(0.848) TCGA-CA-6717-01 19 44981244 44981244 C A ZNF180 Missense_Mutation p.R485I 0.29 deleterious(0.01) benign(0.223) TCGA-CA-6717-01 19 44982196 44982196 T G ZNF180 Missense_Mutation p.K168Q 0.09 tolerated(0.1) possibly_damaging(0.462) TCGA-CA-6717-01 19 45130793 45130793 C T IGSF23 Silent p.I156I 0.10 TCGA-CA-6717-01 19 45322378 45322378 G A BCAM Missense_Mutation p.E468K 0.23 tolerated(0.17) benign(0.14) TCGA-CA-6717-01 19 45769490 45769490 C T MARK4 Missense_Mutation p.S167L 0.24 deleterious(0) probably_damaging(0.922) TCGA-CA-6717-01 19 45848906 45848906 C T KLC3 Missense_Mutation p.A36V 0.28 deleterious(0) possibly_damaging(0.769) TCGA-CA-6717-01 19 45871985 45871985 C T ERCC2 Missense_Mutation p.R88Q 0.24 tolerated(0.06) benign(0.206) TCGA-CA-6717-01 19 46002893 46002893 G T PPM1N Intron 0.11 TCGA-CA-6717-01 19 46003208 46003208 G A PPM1N Missense_Mutation p.G314D 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 19 46029248 46029248 G T VASP Missense_Mutation p.E364D 0.07 tolerated(0.3) possibly_damaging(0.759) TCGA-CA-6717-01 19 46095013 46095013 C T GPR4 Missense_Mutation p.A38T 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 19 46299199 46299199 T C RSPH6A Silent p.E694E 0.14 TCGA-CA-6717-01 19 46417876 46417876 G A NANOS2 Missense_Mutation p.R26W 0.23 deleterious(0.02) benign(0.005) TCGA-CA-6717-01 19 46464332 46464332 G A NOVA2 Silent p.I55I 0.11 TCGA-CA-6717-01 19 46627928 46627928 G T IGFL3 5'UTR 0.23 TCGA-CA-6717-01 19 46857022 46857022 G A PPP5C Missense_Mutation p.A47T 0.24 deleterious(0) probably_damaging(0.975) TCGA-CA-6717-01 19 46890450 46890450 C T PPP5C Silent p.F335F 0.10 TCGA-CA-6717-01 19 47204364 47204364 T G PRKD2 Missense_Mutation p.K299Q 0.10 tolerated(0.07) probably_damaging(0.939) TCGA-CA-6717-01 19 47423349 47423349 T G ARHGAP35 Missense_Mutation p.Y473D 0.11 tolerated(0.08) probably_damaging(0.937) TCGA-CA-6717-01 19 47423403 47423403 G T ARHGAP35 Nonsense_Mutation p.E491* 0.12 TCGA-CA-6717-01 19 47424744 47424744 T G ARHGAP35 Missense_Mutation p.F938V 0.28 deleterious(0) benign(0.435) TCGA-CA-6717-01 19 47656215 47656215 A T SAE1 Missense_Mutation p.N149Y 0.09 tolerated(0.31) possibly_damaging(0.781) TCGA-CA-6717-01 19 47700525 47700525 C T SAE1 Missense_Mutation p.P257S 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 47773835 47773835 G A CCDC9 Silent p.P325P 0.24 TCGA-CA-6717-01 19 47858455 47858455 G A DHX34 Missense_Mutation p.D289N 0.15 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 19 4792720 4792720 C T FEM1A Missense_Mutation p.S285F 0.12 deleterious(0.04) benign(0.023) TCGA-CA-6717-01 19 4792895 4792895 G C FEM1A Missense_Mutation p.Q343H 0.15 tolerated(0.09) possibly_damaging(0.781) TCGA-CA-6717-01 19 48006731 48006731 C T NAPA Missense_Mutation p.E43K 0.10 deleterious(0.01) possibly_damaging(0.586) TCGA-CA-6717-01 19 48284119 48284119 A C SEPW1 Splice_Site p.X19_splice 0.13 TCGA-CA-6717-01 19 48305235 48305235 G T TPRX1 Missense_Mutation p.P345T 0.12 tolerated_low_confidence(0.06) probably_damaging(0.958) TCGA-CA-6717-01 19 48385400 48385400 T G SULT2A1 Missense_Mutation p.K138T 0.11 tolerated(0.34) benign(0.029) TCGA-CA-6717-01 19 49207715 49207715 G T FUT2 3'UTR 0.21 TCGA-CA-6717-01 19 49218965 49218965 A C MAMSTR Missense_Mutation p.S53A 0.11 tolerated_low_confidence(0.31) benign(0.097) TCGA-CA-6717-01 19 49316545 49316545 C T HSD17B14 Missense_Mutation p.E234K 0.15 deleterious(0.01) benign(0.211) TCGA-CA-6717-01 19 49442936 49442936 C T DHDH Silent p.V199V 0.22 TCGA-CA-6717-01 19 49469966 49469966 G A FTL Missense_Mutation p.E168K 0.12 tolerated(0.18) benign(0.383) TCGA-CA-6717-01 19 49527375 49527375 G T CGB 5'UTR 0.38 TCGA-CA-6717-01 19 49564674 49564674 C T NTF4 Missense_Mutation p.R194Q 0.10 tolerated(0.13) possibly_damaging(0.895) TCGA-CA-6717-01 19 49621677 49621677 T G LIN7B 3'UTR 0.20 TCGA-CA-6717-01 19 49656856 49656856 C A HRC Nonsense_Mutation p.E547* 0.17 TCGA-CA-6717-01 19 49894121 49894121 C T CCDC155 5'UTR 0.29 TCGA-CA-6717-01 19 49993163 49993163 T G RPL13A Silent p.A24A 0.21 TCGA-CA-6717-01 19 50031791 50031791 A C RCN3 Missense_Mutation p.K21T 0.11 tolerated(0.24) benign(0.08) TCGA-CA-6717-01 19 50098825 50098825 G A PRR12 Silent p.S411S 0.14 TCGA-CA-6717-01 19 50117845 50117845 T C PRR12 Missense_Mutation p.L1610P 0.23 unknown(0) TCGA-CA-6717-01 19 50128735 50128735 C A PRR12 Silent p.G1994G 0.19 TCGA-CA-6717-01 19 50285818 50285818 T C AP2A1 Missense_Mutation p.S104P 0.17 deleterious(0.02) possibly_damaging(0.805) TCGA-CA-6717-01 19 50462324 50462324 C A SIGLEC11 Missense_Mutation p.E356D 0.20 deleterious(0.02) benign(0.269) TCGA-CA-6717-01 19 50735279 50735279 A G MYH14 Missense_Mutation p.T356A 0.15 deleterious(0) possibly_damaging(0.48) TCGA-CA-6717-01 19 50747549 50747549 A C MYH14 Missense_Mutation p.K389Q 0.13 deleterious(0.04) possibly_damaging(0.452) TCGA-CA-6717-01 19 50863113 50863113 A G NAPSA Silent p.P225P 0.13 TCGA-CA-6717-01 19 50944251 50944251 C T MYBPC2 Silent p.I229I 0.11 TCGA-CA-6717-01 19 51165296 51165296 C T SHANK1 Missense_Mutation p.V2138I 0.14 unknown(0) TCGA-CA-6717-01 19 51363309 51363309 G A KLK3 Missense_Mutation p.E238K 0.09 tolerated(0.66) benign(0.002) TCGA-CA-6717-01 19 51380302 51380302 G C KLK2 Intron 0.21 TCGA-CA-6717-01 19 51501103 51501103 T G KLK8 Missense_Mutation p.K222N 0.09 tolerated(0.13) benign(0.005) TCGA-CA-6717-01 19 51628454 51628454 G A SIGLEC9 Missense_Mutation p.A75T 0.16 deleterious(0.02) probably_damaging(0.945) TCGA-CA-6717-01 19 51729331 51729331 G A CD33 Missense_Mutation p.V231I 0.20 deleterious(0.03) benign(0.339) TCGA-CA-6717-01 19 51768822 51768822 G T SIGLECL1 Nonsense_Mutation p.E75* 0.19 TCGA-CA-6717-01 19 51875849 51875849 G T NKG7 5'UTR 0.24 TCGA-CA-6717-01 19 51883766 51883766 G T LIM2 Missense_Mutation p.F193L 0.09 tolerated(0.12) probably_damaging(0.998) TCGA-CA-6717-01 19 51917741 51917741 G T SIGLEC10 Missense_Mutation p.F548L 0.17 tolerated(0.23) benign(0.049) TCGA-CA-6717-01 19 51920687 51920687 G A SIGLEC10 Nonsense_Mutation p.R24* 0.17 TCGA-CA-6717-01 19 52376794 52376794 T G ZNF577 Missense_Mutation p.K150T 0.20 tolerated(0.07) benign(0.198) TCGA-CA-6717-01 19 52394460 52394460 C T ZNF649 Missense_Mutation p.R310Q 0.29 deleterious(0.01) possibly_damaging(0.587) TCGA-CA-6717-01 19 52505090 52505090 C A ZNF615 Nonsense_Mutation p.E72* 0.20 TCGA-CA-6717-01 19 52519411 52519411 C A ZNF614 Missense_Mutation p.K480N 0.12 deleterious(0.02) benign(0.012) TCGA-CA-6717-01 19 52550143 52550143 G A ZNF432 5'UTR 0.10 TCGA-CA-6717-01 19 52568974 52568974 T C ZNF841 Missense_Mutation p.K721E 0.22 tolerated(0.12) benign(0.045) TCGA-CA-6717-01 19 52570398 52570398 G A ZNF841 Missense_Mutation p.S246L 0.21 tolerated(0.12) probably_damaging(0.915) TCGA-CA-6717-01 19 52627201 52627201 C A ZNF616 Missense_Mutation p.E38D 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 19 52659186 52659186 A G ZNF836 Missense_Mutation p.C584R 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 19 52660036 52660036 T C ZNF836 Silent p.K300K 0.29 TCGA-CA-6717-01 19 52660784 52660784 G T ZNF836 Missense_Mutation p.P51H 0.09 tolerated(0.08) probably_damaging(0.99) TCGA-CA-6717-01 19 52785394 52785394 G T ZNF766 Nonsense_Mutation p.E17* 0.16 TCGA-CA-6717-01 19 52817441 52817441 C A ZNF480 Missense_Mutation p.F36L 0.21 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 19 52825339 52825339 G T ZNF480 Missense_Mutation p.R279I 0.14 tolerated(0.07) benign(0.03) TCGA-CA-6717-01 19 52825756 52825756 G A ZNF480 Missense_Mutation p.R418Q 0.19 tolerated(0.86) benign(0.073) TCGA-CA-6717-01 19 52856970 52856970 C A ZNF610 Missense_Mutation p.F33L 0.17 deleterious(0) probably_damaging(0.912) TCGA-CA-6717-01 19 52857525 52857525 G A ZNF610 Missense_Mutation p.S71N 0.12 tolerated(0.25) benign(0.205) TCGA-CA-6717-01 19 52869977 52869977 T G ZNF610 Missense_Mutation p.I449S 0.11 deleterious(0.01) possibly_damaging(0.665) TCGA-CA-6717-01 19 52905257 52905257 G T ZNF528 5'UTR 0.22 TCGA-CA-6717-01 19 52918519 52918519 C T ZNF528 Silent p.P138P 0.15 TCGA-CA-6717-01 19 52918971 52918971 G T ZNF528 Missense_Mutation p.R289I 0.09 tolerated(0.12) benign(0.416) TCGA-CA-6717-01 19 52919280 52919280 G A ZNF528 Missense_Mutation p.R392H 0.27 tolerated(0.74) benign(0.002) TCGA-CA-6717-01 19 52919559 52919559 G T ZNF528 Missense_Mutation p.R485I 0.14 deleterious(0.04) benign(0.05) TCGA-CA-6717-01 19 52934683 52934683 T G ZNF534 5'UTR 0.27 TCGA-CA-6717-01 19 52941499 52941499 A C ZNF534 Missense_Mutation p.K275N 0.23 deleterious(0.02) benign(0.154) TCGA-CA-6717-01 19 52955082 52955082 C T ZNF578 5'Flank 0.31 TCGA-CA-6717-01 19 53014345 53014345 C T ZNF578 Silent p.G237G 0.18 TCGA-CA-6717-01 19 53014598 53014598 A C ZNF578 Missense_Mutation p.K322Q 0.29 deleterious(0.02) probably_damaging(0.98) TCGA-CA-6717-01 19 53015009 53015009 G T ZNF578 Nonsense_Mutation p.E459* 0.28 TCGA-CA-6717-01 19 53086349 53086349 G T ZNF701 Missense_Mutation p.R412I 0.12 tolerated(0.11) benign(0.031) TCGA-CA-6717-01 19 53269132 53269132 G T ZNF600 Nonsense_Mutation p.S626* 0.24 TCGA-CA-6717-01 19 53270132 53270132 G A ZNF600 Missense_Mutation p.R293C 0.12 tolerated(0.06) benign(0.438) TCGA-CA-6717-01 19 53270133 53270133 A G ZNF600 Silent p.H292H 0.10 TCGA-CA-6717-01 19 53303370 53303370 C A ZNF28 Missense_Mutation p.E576D 0.10 deleterious(0.02) possibly_damaging(0.524) TCGA-CA-6717-01 19 53384653 53384653 C A ZNF320 Missense_Mutation p.E242D 0.16 tolerated(0.08) benign(0.085) TCGA-CA-6717-01 19 53384933 53384933 C T ZNF320 Missense_Mutation p.R149Q 0.18 tolerated(0.36) benign(0.004) TCGA-CA-6717-01 19 53385148 53385148 T G ZNF320 Missense_Mutation p.Q77H 0.11 tolerated(1) benign(0.002) TCGA-CA-6717-01 19 53453043 53453043 T C ZNF816 3'UTR 0.16 TCGA-CA-6717-01 19 53453174 53453174 C A ZNF816 Missense_Mutation p.E618D 0.28 deleterious(0.03) possibly_damaging(0.797) TCGA-CA-6717-01 19 53473269 53473269 T A ZNF702P RNA 0.11 TCGA-CA-6717-01 19 53572793 53572793 G A ZNF160 Missense_Mutation p.R332W 0.09 tolerated(0.09) probably_damaging(0.914) TCGA-CA-6717-01 19 53668818 53668818 G A ZNF665 Nonsense_Mutation p.R309* 0.17 TCGA-CA-6717-01 19 53741189 53741189 T G ZNF677 Missense_Mutation p.K264T 0.20 deleterious(0.02) benign(0.048) TCGA-CA-6717-01 19 53762648 53762648 C A VN1R2 Silent p.L340L 0.10 TCGA-CA-6717-01 19 53854464 53854464 G T ZNF845 Missense_Mutation p.R179I 0.28 tolerated(0.07) probably_damaging(0.988) TCGA-CA-6717-01 19 53886627 53886627 G T ZNF525 3'UTR 0.42 TCGA-CA-6717-01 19 53913453 53913453 A C ZNF765 3'UTR 0.50 TCGA-CA-6717-01 19 53959939 53959939 C T ZNF761 RNA 0.16 TCGA-CA-6717-01 19 53993657 53993657 G T ZNF813 Missense_Mutation p.E57D 0.16 tolerated(0.15) benign(0.434) TCGA-CA-6717-01 19 54140220 54140220 C A DPRX Missense_Mutation p.S185Y 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-CA-6717-01 19 54188269 54188269 G A MIR515-2 RNA 0.18 TCGA-CA-6717-01 19 54188322 54188322 C A MIR515-2 RNA 0.09 TCGA-CA-6717-01 19 54216646 54216646 C A MIR519D RNA 0.09 TCGA-CA-6717-01 19 54225448 54225448 A T MIR520G RNA 0.10 TCGA-CA-6717-01 19 54234315 54234315 C T MIR518A1 RNA 0.19 TCGA-CA-6717-01 19 54255684 54255684 C A MIR519A1 RNA 0.21 TCGA-CA-6717-01 19 54291985 54291985 C A NLRP12 3'Flank 0.19 TCGA-CA-6717-01 19 54297337 54297337 C T NLRP12 Missense_Mutation p.R1051Q 0.09 tolerated(0.31) probably_damaging(0.997) TCGA-CA-6717-01 19 54385826 54385826 G A PRKCG Silent p.R26R 0.15 TCGA-CA-6717-01 19 54395022 54395022 G A PRKCG Silent p.T208T 0.17 TCGA-CA-6717-01 19 54396634 54396634 G T PRKCG Nonsense_Mutation p.E310* 0.12 TCGA-CA-6717-01 19 54403932 54403932 T C PRKCG Missense_Mutation p.C502R 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 5455771 5455771 C T ZNRF4 Missense_Mutation p.S90L 0.21 tolerated(0.86) benign(0) TCGA-CA-6717-01 19 54561722 54561722 C T VSTM1 Missense_Mutation p.D65N 0.22 tolerated(0.13) possibly_damaging(0.718) TCGA-CA-6717-01 19 54598753 54598753 C T OSCAR 3'UTR 0.27 TCGA-CA-6717-01 19 54610123 54610123 G A NDUFA3 Missense_Mutation p.V57I 0.20 tolerated(0.1) benign(0.002) TCGA-CA-6717-01 19 54692366 54692366 C A MBOAT7 Splice_Site 0.10 TCGA-CA-6717-01 19 54695689 54695689 G A TSEN34 Missense_Mutation p.A121T 0.19 deleterious(0.01) possibly_damaging(0.771) TCGA-CA-6717-01 19 54710373 54710373 C T RPS9 Intron 0.25 TCGA-CA-6717-01 19 54754971 54754971 G T LILRB5 Intron 0.24 TCGA-CA-6717-01 19 54756231 54756231 A G LILRB5 Missense_Mutation p.L525P 0.16 deleterious(0.05) benign(0.011) TCGA-CA-6717-01 19 54778496 54778496 A G LILRB2 3'UTR 0.19 TCGA-CA-6717-01 19 54780693 54780693 C T LILRB2 Missense_Mutation p.R484Q 0.16 tolerated(0.12) benign(0.361) TCGA-CA-6717-01 19 54872701 54872701 C A LAIR1 Missense_Mutation p.R62S 0.12 deleterious(0.03) benign(0.028) TCGA-CA-6717-01 19 55447659 55447659 C A NLRP7 Missense_Mutation p.R757I 0.17 deleterious(0.01) possibly_damaging(0.746) TCGA-CA-6717-01 19 55450605 55450605 C T NLRP7 Missense_Mutation p.E528K 0.25 tolerated(0.15) benign(0.18) TCGA-CA-6717-01 19 55485875 55485875 T G NLRP2 Silent p.A96A 0.12 TCGA-CA-6717-01 19 55494746 55494746 C T NLRP2 Silent p.L560L 0.18 TCGA-CA-6717-01 19 55494940 55494940 T C NLRP2 Missense_Mutation p.F625S 0.09 deleterious(0) possibly_damaging(0.563) TCGA-CA-6717-01 19 55501917 55501917 C T NLRP2 Missense_Mutation p.A862V 0.18 tolerated(0.09) benign(0.225) TCGA-CA-6717-01 19 55690429 55690429 C T SYT5 5'UTR 0.21 TCGA-CA-6717-01 19 55880213 55880213 G T IL11 Missense_Mutation p.P35H 0.10 deleterious(0) unknown(0) TCGA-CA-6717-01 19 55949070 55949070 G A SHISA7 Missense_Mutation p.S293F 0.33 deleterious(0) probably_damaging(0.915) TCGA-CA-6717-01 19 56005208 56005208 G A SSC5D Missense_Mutation p.R381Q 0.18 possibly_damaging(0.564) TCGA-CA-6717-01 19 56029748 56029748 A G SSC5D Missense_Mutation p.T1369A 0.24 unknown(0) TCGA-CA-6717-01 19 56154756 56154756 G A ZNF580 3'UTR 0.35 TCGA-CA-6717-01 19 56244117 56244117 G A NLRP9 Silent p.N360N 0.14 TCGA-CA-6717-01 19 56297007 56297007 G T NLRP11 Missense_Mutation p.S1029Y 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-CA-6717-01 19 56303767 56303767 G T NLRP11 Missense_Mutation p.L805I 0.26 deleterious(0.04) possibly_damaging(0.634) TCGA-CA-6717-01 19 56321222 56321222 T C NLRP11 Missense_Mutation p.K252E 0.10 tolerated(0.08) benign(0.138) TCGA-CA-6717-01 19 56370132 56370132 T G NLRP4 Missense_Mutation p.F458C 0.09 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 19 56370229 56370229 A C NLRP4 Missense_Mutation p.K490N 0.25 deleterious(0) benign(0.23) TCGA-CA-6717-01 19 56373461 56373461 C T NLRP4 Missense_Mutation p.R708C 0.11 tolerated(0.2) benign(0.043) TCGA-CA-6717-01 19 56423571 56423571 T G NLRP13 Missense_Mutation p.S538R 0.17 tolerated(0.08) probably_damaging(0.997) TCGA-CA-6717-01 19 56466529 56466529 T G NLRP8 Missense_Mutation p.Y369D 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 56487544 56487544 C A NLRP8 Silent p.I917I 0.11 TCGA-CA-6717-01 19 5649954 5649954 C T SAFB Missense_Mutation p.S389L 0.21 deleterious(0.04) benign(0.009) TCGA-CA-6717-01 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.14 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 19 56552434 56552434 C T NLRP5 Missense_Mutation p.P978L 0.17 deleterious(0) possibly_damaging(0.758) TCGA-CA-6717-01 19 56694541 56694541 G T GALP Missense_Mutation p.K85N 0.10 deleterious(0.02) benign(0.04) TCGA-CA-6717-01 19 56736140 56736140 G T ZSCAN5A Missense_Mutation p.F92L 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 19 56934469 56934469 G T ZNF583 Nonsense_Mutation p.E148* 0.08 TCGA-CA-6717-01 19 56935000 56935000 G T ZNF583 Nonsense_Mutation p.E325* 0.14 TCGA-CA-6717-01 19 56953715 56953715 G T ZNF667 Missense_Mutation p.L217I 0.09 tolerated(0.35) benign(0.087) TCGA-CA-6717-01 19 57036232 57036232 G T ZNF471 Nonsense_Mutation p.E266* 0.20 TCGA-CA-6717-01 19 57036365 57036365 G T ZNF471 Missense_Mutation p.R310I 0.13 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 19 57036704 57036704 G T ZNF471 Missense_Mutation p.R423I 0.25 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 19 57036915 57036915 A C ZNF471 Silent p.G493G 0.18 TCGA-CA-6717-01 19 57065434 57065434 A C ZFP28 Missense_Mutation p.K427T 0.21 deleterious(0) probably_damaging(0.95) TCGA-CA-6717-01 19 57065517 57065517 A C ZFP28 Missense_Mutation p.K455Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 19 57066397 57066397 G A ZFP28 Missense_Mutation p.R748H 0.13 deleterious(0.05) probably_damaging(0.994) TCGA-CA-6717-01 19 57066510 57066510 G T ZFP28 Nonsense_Mutation p.E786* 0.14 TCGA-CA-6717-01 19 57081735 57081735 T C ZNF470 Missense_Mutation p.S19P 0.18 tolerated(0.33) benign(0.001) TCGA-CA-6717-01 19 57088164 57088164 G A ZNF470 Missense_Mutation p.E123K 0.13 tolerated(0.16) benign(0.004) TCGA-CA-6717-01 19 57089887 57089887 G A ZNF470 Missense_Mutation p.R697Q 0.13 tolerated(0.1) benign(0.001) TCGA-CA-6717-01 19 57133718 57133718 G A ZNF71 Missense_Mutation p.E355K 0.15 tolerated(0.33) probably_damaging(0.992) TCGA-CA-6717-01 19 57286702 57286702 C T ZIM2 Missense_Mutation p.G313E 0.10 deleterious(0.05) benign(0.219) TCGA-CA-6717-01 19 57301303 57301303 G A ZIM2 Silent p.D138D 0.14 TCGA-CA-6717-01 19 57325372 57325372 C T PEG3 Missense_Mutation p.D1480N 0.23 tolerated(0.08) probably_damaging(0.984) TCGA-CA-6717-01 19 57325805 57325805 C A PEG3 Missense_Mutation p.K1335N 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 19 57327782 57327782 C A PEG3 Missense_Mutation p.Q676H 0.16 deleterious(0) possibly_damaging(0.742) TCGA-CA-6717-01 19 57327855 57327855 C T PEG3 Missense_Mutation p.G652E 0.16 tolerated(0.13) benign(0.299) TCGA-CA-6717-01 19 57328397 57328397 C A PEG3 Missense_Mutation p.Q471H 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 57328706 57328706 C A PEG3 Silent p.G368G 0.18 TCGA-CA-6717-01 19 57640307 57640307 C A USP29 Silent p.S88S 0.13 TCGA-CA-6717-01 19 57641681 57641681 A G USP29 Silent p.K546K 0.15 TCGA-CA-6717-01 19 57642089 57642089 T C USP29 Silent p.L682L 0.16 TCGA-CA-6717-01 19 57672018 57672018 C A DUXA Missense_Mutation p.R58I 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 57773013 57773013 T C CTC-444N24.8 RNA 0.21 TCGA-CA-6717-01 19 5783024 5783024 C T PRR22 Missense_Mutation p.G412R 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-CA-6717-01 19 57839813 57839813 G A ZNF543 Missense_Mutation p.R328Q 0.22 tolerated(0.73) possibly_damaging(0.621) TCGA-CA-6717-01 19 57840529 57840529 G T ZNF543 Missense_Mutation p.D567Y 0.09 deleterious(0) possibly_damaging(0.474) TCGA-CA-6717-01 19 57868127 57868127 A G ZNF304 Missense_Mutation p.H297R 0.13 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 19 57868271 57868271 G A ZNF304 Missense_Mutation p.S345N 0.10 tolerated(0.3) probably_damaging(0.941) TCGA-CA-6717-01 19 57868357 57868357 C T ZNF304 Missense_Mutation p.R374C 0.09 tolerated(0.14) probably_damaging(0.969) TCGA-CA-6717-01 19 57889212 57889212 C A ZNF547 Missense_Mutation p.H290N 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 57929290 57929290 T C AC003002.6 Missense_Mutation p.V21A 0.13 tolerated(0.18) possibly_damaging(0.828) TCGA-CA-6717-01 19 57931509 57931509 C T ZNF17 Missense_Mutation p.P217S 0.19 tolerated(0.41) benign(0.123) TCGA-CA-6717-01 19 57932832 57932832 A C ZNF17 Missense_Mutation p.K658Q 0.26 tolerated(0.13) benign(0.017) TCGA-CA-6717-01 19 58017867 58017867 T C ZNF773 Missense_Mutation p.L135S 0.28 deleterious(0.02) possibly_damaging(0.691) TCGA-CA-6717-01 19 58049259 58049259 G T ZNF549 Missense_Mutation p.R296I 0.21 deleterious(0) possibly_damaging(0.666) TCGA-CA-6717-01 19 58058340 58058340 C A ZNF550 3'UTR 0.08 TCGA-CA-6717-01 19 58083566 58083566 C T ZNF416 Missense_Mutation p.R569Q 0.14 tolerated(1) benign(0.006) TCGA-CA-6717-01 19 58084067 58084067 C A ZNF416 Missense_Mutation p.R402I 0.09 tolerated(0.11) benign(0.009) TCGA-CA-6717-01 19 58117829 58117829 A G ZNF530 Silent p.Q312Q 0.10 TCGA-CA-6717-01 19 58130791 58130791 T C ZNF134 5'UTR 0.09 TCGA-CA-6717-01 19 58131747 58131747 T C ZNF134 Missense_Mutation p.F87S 0.11 deleterious(0.02) probably_damaging(0.936) TCGA-CA-6717-01 19 58131926 58131926 G A ZNF134 Missense_Mutation p.G147S 0.10 tolerated(0.41) benign(0) TCGA-CA-6717-01 19 58152302 58152302 C A ZNF211 Missense_Mutation p.L215I 0.09 deleterious(0.02) possibly_damaging(0.671) TCGA-CA-6717-01 19 58187625 58187625 G A ZSCAN4 Missense_Mutation p.G38R 0.30 tolerated(0.23) benign(0.157) TCGA-CA-6717-01 19 58198529 58198529 T G ZNF551 Missense_Mutation p.L296V 0.33 tolerated(0.3) benign(0.136) TCGA-CA-6717-01 19 58212943 58212943 T C ZNF154 3'UTR 0.28 TCGA-CA-6717-01 19 58213019 58213019 C A ZNF154 Missense_Mutation p.R433I 0.21 deleterious(0) benign(0.227) TCGA-CA-6717-01 19 58232232 58232232 G A ZNF671 Missense_Mutation p.R408W 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-CA-6717-01 19 58233705 58233705 C T ZNF671 Missense_Mutation p.A123T 0.17 tolerated(0.31) benign(0.002) TCGA-CA-6717-01 19 58265478 58265478 A C ZNF776 Missense_Mutation p.K327T 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 19 58370894 58370894 C T ZNF587 Missense_Mutation p.R372C 0.11 deleterious(0) possibly_damaging(0.9) TCGA-CA-6717-01 19 58384672 58384672 A C ZNF814 Missense_Mutation p.L696V 0.16 tolerated(0.21) benign(0.373) TCGA-CA-6717-01 19 58385427 58385427 G T ZNF814 Missense_Mutation p.S444Y 0.18 deleterious(0.04) benign(0.001) TCGA-CA-6717-01 19 58437885 58437885 C T ZNF418 Missense_Mutation p.R555Q 0.18 tolerated(0.68) benign(0.136) TCGA-CA-6717-01 19 58438332 58438332 G T ZNF418 Missense_Mutation p.S406Y 0.09 deleterious(0.04) probably_damaging(0.963) TCGA-CA-6717-01 19 58438597 58438597 C A ZNF418 Nonsense_Mutation p.E318* 0.16 TCGA-CA-6717-01 19 58439165 58439165 C A ZNF418 Missense_Mutation p.Q128H 0.09 tolerated(0.1) probably_damaging(0.948) TCGA-CA-6717-01 19 58452255 58452255 C A ZNF256 3'UTR 0.11 TCGA-CA-6717-01 19 58490285 58490285 C A ZNF606 Missense_Mutation p.R588I 0.09 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 19 58490514 58490514 A G ZNF606 Missense_Mutation p.F512L 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6717-01 19 5866757 5866757 G C FUT5 Missense_Mutation p.A327G 0.11 tolerated(0.24) benign(0.322) TCGA-CA-6717-01 19 58724280 58724280 T C ZNF274 Missense_Mutation p.I577T 0.08 deleterious(0) benign(0.311) TCGA-CA-6717-01 19 58849911 58849911 C T ZSCAN22 Missense_Mutation p.A232V 0.20 tolerated(0.69) benign(0) TCGA-CA-6717-01 19 58862886 58862886 G A A1BG Missense_Mutation p.R261C 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-CA-6717-01 19 59074808 59074808 A G MZF1 Missense_Mutation p.V279A 0.12 deleterious(0.03) benign(0.049) TCGA-CA-6717-01 19 6183136 6183136 A C ACSBG2 Missense_Mutation p.H392P 0.19 tolerated(0.23) possibly_damaging(0.828) TCGA-CA-6717-01 19 6534702 6534702 G A TNFSF9 Silent p.T130T 0.14 TCGA-CA-6717-01 19 6679218 6679218 C A C3 Missense_Mutation p.E1516D 0.12 tolerated(0.05) benign(0.127) TCGA-CA-6717-01 19 6682179 6682179 C A C3 Missense_Mutation p.A1412S 0.11 tolerated(1) benign(0.003) TCGA-CA-6717-01 19 6690729 6690729 G A C3 Missense_Mutation p.R1134W 0.22 deleterious(0) benign(0.221) TCGA-CA-6717-01 19 681696 681696 G T FSTL3 Missense_Mutation p.E260D 0.12 tolerated_low_confidence(0.14) possibly_damaging(0.636) TCGA-CA-6717-01 19 6901954 6901954 T G EMR1 Missense_Mutation p.Y195D 0.12 deleterious(0.02) benign(0.443) TCGA-CA-6717-01 19 6902020 6902020 G T EMR1 Missense_Mutation p.A217S 0.08 tolerated(0.76) benign(0.002) TCGA-CA-6717-01 19 6916336 6916336 G T EMR1 Missense_Mutation p.K459N 0.11 tolerated(0.31) benign(0.09) TCGA-CA-6717-01 19 6919602 6919602 G A EMR1 Silent p.S488S 0.23 TCGA-CA-6717-01 19 7051652 7051652 C T MBD3L2 3'UTR 0.16 TCGA-CA-6717-01 19 7083781 7083781 C A ZNF557 3'UTR 0.18 TCGA-CA-6717-01 19 7122992 7122992 G A INSR Silent p.L1089L 0.15 TCGA-CA-6717-01 19 7126600 7126600 C T INSR Missense_Mutation p.S1003N 0.12 tolerated(0.3) benign(0.008) TCGA-CA-6717-01 19 7570945 7570945 C A C19orf45 Missense_Mutation p.F367L 0.10 deleterious(0) benign(0.188) TCGA-CA-6717-01 19 7693137 7693137 G T XAB2 Missense_Mutation p.F33L 0.23 tolerated(0.29) benign(0.009) TCGA-CA-6717-01 19 7704615 7704615 A C STXBP2 Splice_Site p.X57_splice 0.23 TCGA-CA-6717-01 19 7828178 7828178 T C CLEC4M Missense_Mutation p.V9A 0.13 tolerated(0.78) benign(0.101) TCGA-CA-6717-01 19 8121348 8121348 T G CCL25 Missense_Mutation p.F97C 0.21 tolerated(0.18) benign(0.003) TCGA-CA-6717-01 19 8130982 8130982 G A FBN3 Missense_Mutation p.R2751C 0.14 tolerated(0.07) benign(0.117) TCGA-CA-6717-01 19 8152019 8152019 G A FBN3 Silent p.F2232F 0.19 TCGA-CA-6717-01 19 8186171 8186171 C A FBN3 Missense_Mutation p.S1061I 0.09 deleterious(0) probably_damaging(0.962) TCGA-CA-6717-01 19 8553534 8553534 A C HNRNPM Intron 0.32 TCGA-CA-6717-01 19 8563570 8563570 G T PRAM1 Missense_Mutation p.F374L 0.53 tolerated(0.08) benign(0.026) TCGA-CA-6717-01 19 8563755 8563755 C T PRAM1 Missense_Mutation p.E313K 0.12 deleterious(0.04) benign(0.064) TCGA-CA-6717-01 19 8595116 8595116 G A MYO1F Silent p.F764F 0.15 TCGA-CA-6717-01 19 8619556 8619556 G A MYO1F Silent p.I71I 0.19 TCGA-CA-6717-01 19 8921834 8921834 A G ZNF558 3'UTR 0.19 TCGA-CA-6717-01 19 8921838 8921838 T G ZNF558 3'UTR 0.35 TCGA-CA-6717-01 19 8923284 8923284 G A ZNF558 Missense_Mutation p.P127S 0.23 tolerated(0.29) benign(0.003) TCGA-CA-6717-01 19 8953341 8953341 G T MBD3L1 5'UTR 0.30 TCGA-CA-6717-01 19 8953385 8953385 G T MBD3L1 Missense_Mutation p.D11Y 0.23 tolerated(0.07) probably_damaging(0.963) TCGA-CA-6717-01 19 9000520 9000520 A C MUC16 Silent p.T13488T 0.09 TCGA-CA-6717-01 19 9017347 9017347 A G MUC16 Silent p.N12659N 0.20 TCGA-CA-6717-01 19 9018486 9018486 C T MUC16 Missense_Mutation p.R12563H 0.34 probably_damaging(0.923) TCGA-CA-6717-01 19 9024948 9024948 C T MUC16 Missense_Mutation p.R12305H 0.34 possibly_damaging(0.888) TCGA-CA-6717-01 19 9047483 9047483 G T MUC16 Missense_Mutation p.P11383H 0.12 benign(0.027) TCGA-CA-6717-01 19 9048919 9048919 C A MUC16 Missense_Mutation p.E10904D 0.13 benign(0.383) TCGA-CA-6717-01 19 9054238 9054238 T G MUC16 Missense_Mutation p.K10462Q 0.13 benign(0.016) TCGA-CA-6717-01 19 9054349 9054349 C A MUC16 Splice_Site p.X10425_splice 0.09 TCGA-CA-6717-01 19 9062246 9062246 G T MUC16 Missense_Mutation p.F8400L 0.13 unknown(0) TCGA-CA-6717-01 19 9065232 9065232 G T MUC16 Missense_Mutation p.S7405Y 0.18 unknown(0) TCGA-CA-6717-01 19 9067261 9067261 C A MUC16 Nonsense_Mutation p.E6729* 0.14 TCGA-CA-6717-01 19 9067701 9067701 T C MUC16 Missense_Mutation p.D6582G 0.33 unknown(0) TCGA-CA-6717-01 19 9068166 9068166 G T MUC16 Missense_Mutation p.S6427Y 0.26 unknown(0) TCGA-CA-6717-01 19 9068981 9068981 G A MUC16 Silent p.I6155I 0.18 TCGA-CA-6717-01 19 9072590 9072590 G T MUC16 Silent p.I4952I 0.18 TCGA-CA-6717-01 19 9073513 9073513 A C MUC16 Missense_Mutation p.F4645V 0.24 unknown(0) TCGA-CA-6717-01 19 9073963 9073963 C A MUC16 Missense_Mutation p.D4495Y 0.17 unknown(0) TCGA-CA-6717-01 19 9075429 9075429 C A MUC16 Missense_Mutation p.R4006I 0.10 unknown(0) TCGA-CA-6717-01 19 9076117 9076117 G A MUC16 Missense_Mutation p.P3777S 0.08 unknown(0) TCGA-CA-6717-01 19 9076200 9076200 G T MUC16 Missense_Mutation p.A3749D 0.08 unknown(0) TCGA-CA-6717-01 19 9076360 9076360 T A MUC16 Missense_Mutation p.T3696S 0.08 unknown(0) TCGA-CA-6717-01 19 9077749 9077749 C A MUC16 Nonsense_Mutation p.E3233* 0.09 TCGA-CA-6717-01 19 9083985 9083985 C A MUC16 Missense_Mutation p.K2610N 0.26 unknown(0) TCGA-CA-6717-01 19 9086770 9086770 C T MUC16 Missense_Mutation p.G1682E 0.09 unknown(0) TCGA-CA-6717-01 19 9088130 9088130 A G MUC16 Silent p.L1229L 0.22 TCGA-CA-6717-01 19 9088168 9088168 G A MUC16 Missense_Mutation p.T1216I 0.20 unknown(0) TCGA-CA-6717-01 19 9089593 9089593 C T MUC16 Missense_Mutation p.S741N 0.16 unknown(0) TCGA-CA-6717-01 19 9090272 9090272 T G MUC16 Missense_Mutation p.K515Q 0.22 unknown(0) TCGA-CA-6717-01 19 9090607 9090607 G A MUC16 Missense_Mutation p.A403V 0.17 unknown(0) TCGA-CA-6717-01 19 9213719 9213719 G T OR7G2 Silent p.S88S 0.13 TCGA-CA-6717-01 19 9297131 9297131 T C OR7D2 Missense_Mutation p.I225T 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-CA-6717-01 19 9297335 9297335 G T OR7D2 Missense_Mutation p.R293M 0.22 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CA-6717-01 19 9298334 9298334 A T OR7D2 3'UTR 0.10 TCGA-CA-6717-01 19 9324780 9324780 A T OR7D4 Missense_Mutation p.L245H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 19 9451823 9451823 A T ZNF559 Missense_Mutation p.N69I 0.18 deleterious(0.03) possibly_damaging(0.902) TCGA-CA-6717-01 19 9452522 9452522 C A ZNF559 Missense_Mutation p.S132Y 0.10 tolerated(0.23) benign(0.008) TCGA-CA-6717-01 19 9453040 9453040 G T ZNF559 Nonsense_Mutation p.E305* 0.19 TCGA-CA-6717-01 19 9453161 9453161 G A ZNF559 Missense_Mutation p.R345Q 0.19 tolerated(0.11) possibly_damaging(0.705) TCGA-CA-6717-01 19 9492111 9492111 T C ZNF177 Silent p.Y368Y 0.10 TCGA-CA-6717-01 19 9524570 9524570 C T ZNF266 Missense_Mutation p.R344Q 0.24 tolerated(0.12) probably_damaging(0.985) TCGA-CA-6717-01 19 9577401 9577401 T C ZNF560 Missense_Mutation p.K741R 0.21 tolerated(0.1) benign(0.009) TCGA-CA-6717-01 19 9577542 9577542 C T ZNF560 Missense_Mutation p.R694Q 0.30 tolerated(0.43) possibly_damaging(0.602) TCGA-CA-6717-01 19 9639654 9639654 C T ZNF426 Missense_Mutation p.R356Q 0.13 tolerated(0.3) benign(0.101) TCGA-CA-6717-01 19 9639963 9639963 T C ZNF426 Missense_Mutation p.E253G 0.08 deleterious(0) possibly_damaging(0.638) TCGA-CA-6717-01 19 9643593 9643593 T C ZNF426 Missense_Mutation p.I85V 0.18 tolerated(0.06) benign(0.001) TCGA-CA-6717-01 19 9677489 9677489 C T ZNF121 Silent p.Q100Q 0.29 TCGA-CA-6717-01 19 9764300 9764300 T G ZNF562 Missense_Mutation p.Q202H 0.10 deleterious(0.01) benign(0.252) TCGA-CA-6717-01 19 9801623 9801623 T G ZNF812 Missense_Mutation p.I186L 0.23 tolerated(0.28) probably_damaging(0.986) TCGA-CA-6717-01 19 9801763 9801763 A C ZNF812 Missense_Mutation p.F139C 0.11 tolerated(0.53) possibly_damaging(0.885) TCGA-CA-6717-01 19 9801767 9801767 T A ZNF812 Nonsense_Mutation p.K138* 0.13 TCGA-CA-6717-01 19 9868944 9868944 T G ZNF846 Missense_Mutation p.K270T 0.22 tolerated(1) possibly_damaging(0.728) TCGA-CA-6717-01 19 9874014 9874014 T C ZNF846 Missense_Mutation p.Q29R 0.13 deleterious(0) probably_damaging(0.971) TCGA-CA-6717-01 1 100133276 100133276 C A PALMD Missense_Mutation p.Q69K 0.12 tolerated(0.28) probably_damaging(0.998) TCGA-CA-6717-01 1 100152732 100152732 A G PALMD Silent p.E167E 0.07 TCGA-CA-6717-01 1 100154404 100154404 T G PALMD Silent p.P196P 0.11 TCGA-CA-6717-01 1 100183074 100183074 T G FRRS1 Missense_Mutation p.L376F 0.12 deleterious(0.04) benign(0.278) TCGA-CA-6717-01 1 100376324 100376324 C T AGL Missense_Mutation p.R1253C 0.22 deleterious(0.02) possibly_damaging(0.67) TCGA-CA-6717-01 1 100487957 100487957 A G SLC35A3 Silent p.G301G 0.13 TCGA-CA-6717-01 1 100572525 100572525 C A SASS6 Nonsense_Mutation p.E451* 0.09 TCGA-CA-6717-01 1 100602483 100602483 C T TRMT13 Missense_Mutation p.H65Y 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 100614668 100614668 A C TRMT13 3'UTR 0.12 TCGA-CA-6717-01 1 100621758 100621758 T G LRRC39 Missense_Mutation p.K210T 0.28 tolerated(0.22) benign(0.062) TCGA-CA-6717-01 1 100624848 100624848 G A LRRC39 Nonsense_Mutation p.R115* 0.19 TCGA-CA-6717-01 1 100626081 100626081 C A LRRC39 Nonsense_Mutation p.E54* 0.22 TCGA-CA-6717-01 1 100680435 100680435 C A DBT Nonsense_Mutation p.E293* 0.17 TCGA-CA-6717-01 1 100746847 100746847 C T RTCA Intron 0.23 TCGA-CA-6717-01 1 100933568 100933568 T C CDC14A Missense_Mutation p.F299L 0.10 tolerated(0.26) benign(0.061) TCGA-CA-6717-01 1 101007388 101007388 A G GPR88 3'UTR 0.15 TCGA-CA-6717-01 1 101200173 101200173 G T VCAM1 Missense_Mutation p.K636N 0.10 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 1 101339742 101339742 A C EXTL2 Missense_Mutation p.F250C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 101343354 101343354 A C EXTL2 Silent p.T37T 0.20 TCGA-CA-6717-01 1 10166538 10166538 G A UBE4B Missense_Mutation p.A365T 0.32 tolerated_low_confidence(0.55) possibly_damaging(0.499) TCGA-CA-6717-01 1 101705762 101705762 C A S1PR1 3'UTR 0.20 TCGA-CA-6717-01 1 10177613 10177613 C T UBE4B Silent p.I431I 0.19 TCGA-CA-6717-01 1 10221278 10221278 T C UBE4B Silent p.S1044S 0.15 TCGA-CA-6717-01 1 102312444 102312444 A G OLFM3 Intron 0.13 TCGA-CA-6717-01 1 10342391 10342391 T G KIF1B Intron 0.18 TCGA-CA-6717-01 1 103471638 103471638 C A COL11A1 Nonsense_Mutation p.E593* 0.10 TCGA-CA-6717-01 1 103491411 103491411 G T COL11A1 Intron 0.25 TCGA-CA-6717-01 1 10357130 10357130 G T KIF1B Missense_Mutation p.E633D 0.19 tolerated(0.12) probably_damaging(0.986) TCGA-CA-6717-01 1 10477089 10477089 G T PGD Missense_Mutation p.R297I 0.33 deleterious(0) probably_damaging(0.949) TCGA-CA-6717-01 1 10477143 10477143 A G PGD Missense_Mutation p.D315G 0.14 deleterious(0.01) benign(0.187) TCGA-CA-6717-01 1 107601006 107601006 T C PRMT6 3'UTR 0.11 TCGA-CA-6717-01 1 107601271 107601271 A C PRMT6 3'UTR 0.10 TCGA-CA-6717-01 1 108417523 108417523 C A VAV3 Missense_Mutation p.K107N 0.10 deleterious(0) possibly_damaging(0.882) TCGA-CA-6717-01 1 108728548 108728548 T C SLC25A24 Missense_Mutation p.K71R 0.08 tolerated(0.37) benign(0.049) TCGA-CA-6717-01 1 108766260 108766260 A G NBPF4 3'UTR 0.09 TCGA-CA-6717-01 1 109265162 109265162 A G FNDC7 Silent p.A268A 0.15 TCGA-CA-6717-01 1 109440608 109440608 C A GPSM2 Missense_Mutation p.L148I 0.18 tolerated(0.51) possibly_damaging(0.456) TCGA-CA-6717-01 1 109538245 109538245 T G WDR47 Missense_Mutation p.N558H 0.17 tolerated(0.12) benign(0.002) TCGA-CA-6717-01 1 109553808 109553808 A C WDR47 Missense_Mutation p.L294R 0.20 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 1 109560181 109560181 G T WDR47 Missense_Mutation p.F67L 0.10 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 1 109801220 109801220 G A CELSR2 Silent p.T1159T 0.21 TCGA-CA-6717-01 1 109853141 109853141 G T SORT1 3'UTR 0.29 TCGA-CA-6717-01 1 109897997 109897997 A G SORT1 Missense_Mutation p.S179P 0.12 tolerated(0.12) benign(0.062) TCGA-CA-6717-01 1 109910034 109910034 G A SORT1 Nonsense_Mutation p.R146* 0.09 TCGA-CA-6717-01 1 110022002 110022002 C A SYPL2 Silent p.L217L 0.12 TCGA-CA-6717-01 1 11008763 11008763 T C C1orf127 Missense_Mutation p.T477A 0.29 tolerated(0.6) benign(0.051) TCGA-CA-6717-01 1 11014185 11014185 G A C1orf127 Silent p.V330V 0.28 TCGA-CA-6717-01 1 11017769 11017769 A G C1orf127 Silent p.S199S 0.13 TCGA-CA-6717-01 1 110199871 110199871 A C GSTM4 Missense_Mutation p.E49D 0.11 tolerated(0.12) benign(0.007) TCGA-CA-6717-01 1 110280787 110280787 G A GSTM3 Nonsense_Mutation p.R100* 0.07 TCGA-CA-6717-01 1 110655191 110655191 G T UBL4B Missense_Mutation p.R12I 0.14 deleterious(0) probably_damaging(0.931) TCGA-CA-6717-01 1 110656274 110656274 G A UBL4B 3'UTR 0.16 TCGA-CA-6717-01 1 11076975 11076975 G A TARDBP Missense_Mutation p.D105N 0.33 deleterious(0.04) benign(0.189) TCGA-CA-6717-01 1 110884420 110884420 A G RBM15 Missense_Mutation p.N798S 0.11 tolerated(0.83) benign(0.055) TCGA-CA-6717-01 1 110921859 110921859 A G SLC16A4 Missense_Mutation p.S216P 0.10 tolerated(0.26) benign(0.012) TCGA-CA-6717-01 1 110996643 110996643 C T PROK1 Nonsense_Mutation p.R45* 0.22 TCGA-CA-6717-01 1 11103559 11103559 G T MASP2 Missense_Mutation p.S193Y 0.14 deleterious(0) probably_damaging(0.93) TCGA-CA-6717-01 1 111060956 111060956 G A KCNA10 Missense_Mutation p.R152W 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 111144701 111144701 G A KCNA2 3'UTR 0.16 TCGA-CA-6717-01 1 111216212 111216212 A G KCNA3 Missense_Mutation p.I407T 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 111216991 111216991 G T KCNA3 Nonsense_Mutation p.Y147* 0.16 TCGA-CA-6717-01 1 11129660 11129660 A C EXOSC10 Missense_Mutation p.F815C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 11142821 11142821 A T EXOSC10 Missense_Mutation p.S402T 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 111434969 111434969 C A CD53 Silent p.I22I 0.22 TCGA-CA-6717-01 1 11151152 11151152 G A EXOSC10 Nonsense_Mutation p.R188* 0.17 TCGA-CA-6717-01 1 111783975 111783975 G T CHI3L2 Missense_Mutation p.K315N 0.14 deleterious(0.05) benign(0.008) TCGA-CA-6717-01 1 111860642 111860642 C A CHIA Missense_Mutation p.L214I 0.09 deleterious(0) possibly_damaging(0.887) TCGA-CA-6717-01 1 111862853 111862853 A C CHIA Missense_Mutation p.Q399P 0.21 tolerated(0.34) benign(0.046) TCGA-CA-6717-01 1 111891203 111891203 T G PIFO Missense_Mutation p.N108K 0.20 tolerated(0.12) benign(0.287) TCGA-CA-6717-01 1 112233958 112233958 C T RAP1A Intron 0.24 TCGA-CA-6717-01 1 112303389 112303389 G A DDX20 Missense_Mutation p.E248K 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 1 112323370 112323370 G A KCND3 Missense_Mutation p.S438L 0.12 tolerated(0.24) benign(0.32) TCGA-CA-6717-01 1 112998846 112998846 C A CTTNBP2NL Silent p.I244I 0.25 TCGA-CA-6717-01 1 113266566 113266566 G A FAM19A3 Splice_Site p.X89_splice 0.09 TCGA-CA-6717-01 1 113456732 113456732 G A SLC16A1 Silent p.V428V 0.11 TCGA-CA-6717-01 1 113464725 113464725 T C SLC16A1 Missense_Mutation p.Y83C 0.18 deleterious(0) possibly_damaging(0.634) TCGA-CA-6717-01 1 113471809 113471809 G T SLC16A1 Missense_Mutation p.T41N 0.10 deleterious(0) possibly_damaging(0.772) TCGA-CA-6717-01 1 113643053 113643053 A G LRIG2 Missense_Mutation p.N419S 0.19 tolerated(0.12) benign(0.003) TCGA-CA-6717-01 1 114226248 114226248 C A MAGI3 Missense_Mutation p.S1353Y 0.12 deleterious_low_confidence(0.01) benign(0.413) TCGA-CA-6717-01 1 114248699 114248699 C T PHTF1 Missense_Mutation p.R495Q 0.09 deleterious(0.03) possibly_damaging(0.545) TCGA-CA-6717-01 1 114256052 114256052 C A PHTF1 Missense_Mutation p.R211I 0.14 deleterious(0) benign(0.128) TCGA-CA-6717-01 1 114300338 114300338 C T PHTF1 Missense_Mutation p.E29K 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 114300341 114300341 T C PHTF1 Missense_Mutation p.I28V 0.11 tolerated(1) benign(0.06) TCGA-CA-6717-01 1 114308488 114308488 T G RSBN1 3'UTR 0.27 TCGA-CA-6717-01 1 114391241 114391241 T C PTPN22 Missense_Mutation p.Y279C 0.12 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 1 114394704 114394704 A G PTPN22 Missense_Mutation p.V258A 0.20 deleterious(0) possibly_damaging(0.879) TCGA-CA-6717-01 1 114429193 114429193 G A BCL2L15 Missense_Mutation p.A72V 0.25 tolerated(0.46) benign(0.034) TCGA-CA-6717-01 1 114437757 114437757 G A AP4B1 Missense_Mutation p.T717M 0.17 tolerated(0.15) benign(0.01) TCGA-CA-6717-01 1 114454745 114454745 T A DCLRE1B Missense_Mutation p.F511I 0.09 tolerated_low_confidence(0.1) benign(0.002) TCGA-CA-6717-01 1 114483379 114483379 G A HIPK1 Missense_Mutation p.R125Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 114499772 114499772 A G HIPK1 Missense_Mutation p.E540G 0.08 deleterious(0) probably_damaging(0.954) TCGA-CA-6717-01 1 114976250 114976250 C T TRIM33 Silent p.Q343Q 0.11 TCGA-CA-6717-01 1 115130411 115130411 A G DENND2C Missense_Mutation p.L865P 0.24 deleterious(0.01) possibly_damaging(0.582) TCGA-CA-6717-01 1 115142936 115142936 T C DENND2C Missense_Mutation p.E665G 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 115147552 115147552 T G DENND2C Missense_Mutation p.E553A 0.15 deleterious(0.02) possibly_damaging(0.7) TCGA-CA-6717-01 1 115168239 115168239 C A DENND2C Nonsense_Mutation p.E123* 0.17 TCGA-CA-6717-01 1 115223060 115223060 C T AMPD1 Missense_Mutation p.R229Q 0.15 tolerated(0.49) benign(0.001) TCGA-CA-6717-01 1 115262259 115262259 G T CSDE1 Missense_Mutation p.F765L 0.11 deleterious(0.03) benign(0.105) TCGA-CA-6717-01 1 115400103 115400103 A C SYCP1 Missense_Mutation p.K92N 0.10 tolerated(0.12) benign(0.058) TCGA-CA-6717-01 1 115430257 115430257 A C SYCP1 Missense_Mutation p.N401H 0.23 tolerated(0.54) possibly_damaging(0.83) TCGA-CA-6717-01 1 115453097 115453097 T G SYCP1 Missense_Mutation p.L467R 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 115455727 115455727 A C SYCP1 Missense_Mutation p.S535R 0.10 tolerated(0.06) benign(0.056) TCGA-CA-6717-01 1 115488942 115488942 C T SYCP1 Silent p.D729D 0.23 TCGA-CA-6717-01 1 115524009 115524009 C A SYCP1 Missense_Mutation p.S812Y 0.24 tolerated(0.09) possibly_damaging(0.867) TCGA-CA-6717-01 1 11561407 11561407 G A PTCHD2 Missense_Mutation p.D120N 0.21 tolerated_low_confidence(0.05) probably_damaging(0.995) TCGA-CA-6717-01 1 11577535 11577535 G A PTCHD2 Missense_Mutation p.D589N 0.15 deleterious(0.01) possibly_damaging(0.833) TCGA-CA-6717-01 1 11594442 11594442 C T PTCHD2 Missense_Mutation p.T1127M 0.16 deleterious(0) possibly_damaging(0.542) TCGA-CA-6717-01 1 116269735 116269735 C A CASQ2 Missense_Mutation p.K205N 0.48 deleterious(0) probably_damaging(0.913) TCGA-CA-6717-01 1 116280876 116280876 G T CASQ2 Silent p.L167L 0.13 TCGA-CA-6717-01 1 116280890 116280890 C A CASQ2 Missense_Mutation p.D163Y 0.11 deleterious(0) probably_damaging(0.933) TCGA-CA-6717-01 1 116280902 116280902 C T CASQ2 Missense_Mutation p.E159K 0.30 tolerated(0.07) possibly_damaging(0.565) TCGA-CA-6717-01 1 116562256 116562256 C A SLC22A15 Missense_Mutation p.F118L 0.10 tolerated(0.1) benign(0.13) TCGA-CA-6717-01 1 116609171 116609171 G A SLC22A15 Missense_Mutation p.V466I 0.21 tolerated(0.16) benign(0.026) TCGA-CA-6717-01 1 116930104 116930104 A C ATP1A1 Missense_Mutation p.Q126H 0.13 deleterious(0.02) benign(0.006) TCGA-CA-6717-01 1 117086971 117086971 T G CD58 Missense_Mutation p.N109T 0.10 tolerated(0.15) benign(0.092) TCGA-CA-6717-01 1 117122057 117122057 C T IGSF3 Silent p.T1117T 0.18 TCGA-CA-6717-01 1 117131381 117131381 T C IGSF3 Missense_Mutation p.N812S 0.11 tolerated(0.09) benign(0.05) TCGA-CA-6717-01 1 117131534 117131534 T C IGSF3 Missense_Mutation p.Y761C 0.29 deleterious(0) possibly_damaging(0.908) TCGA-CA-6717-01 1 117297357 117297357 G A CD2 Missense_Mutation p.D56N 0.17 tolerated(0.09) probably_damaging(0.984) TCGA-CA-6717-01 1 117484611 117484611 C T PTGFRN Silent p.N108N 0.11 TCGA-CA-6717-01 1 117556200 117556200 G A CD101 Silent p.K338K 0.19 TCGA-CA-6717-01 1 117556306 117556306 G A CD101 Missense_Mutation p.A374T 0.20 tolerated(1) benign(0.001) TCGA-CA-6717-01 1 117660884 117660884 C T TRIM45 Missense_Mutation p.E332K 0.23 deleterious(0.01) benign(0.228) TCGA-CA-6717-01 1 117699396 117699396 T G VTCN1 Missense_Mutation p.E82A 0.14 deleterious(0.01) possibly_damaging(0.817) TCGA-CA-6717-01 1 117910988 117910988 A G MAN1A2 Silent p.S61S 0.11 TCGA-CA-6717-01 1 117944905 117944905 C T MAN1A2 Nonsense_Mutation p.R134* 0.11 TCGA-CA-6717-01 1 118166183 118166183 C T FAM46C Silent p.I231I 0.09 TCGA-CA-6717-01 1 118169813 118169813 G T FAM46C 3'UTR 0.19 TCGA-CA-6717-01 1 11854528 11854528 A G MTHFR Missense_Mutation p.S412P 0.23 tolerated(0.17) benign(0.005) TCGA-CA-6717-01 1 118579490 118579490 C A SPAG17 Missense_Mutation p.K1112N 0.19 tolerated(0.13) benign(0.168) TCGA-CA-6717-01 1 118582008 118582008 T G SPAG17 Missense_Mutation p.N1076H 0.11 tolerated(0.08) benign(0.319) TCGA-CA-6717-01 1 118584610 118584610 T G SPAG17 Missense_Mutation p.K957T 0.21 deleterious(0.01) possibly_damaging(0.792) TCGA-CA-6717-01 1 118596670 118596670 T G SPAG17 Missense_Mutation p.E923D 0.21 tolerated(0.14) benign(0.019) TCGA-CA-6717-01 1 118629318 118629318 G A SPAG17 Silent p.H529H 0.11 TCGA-CA-6717-01 1 118658001 118658001 T A SPAG17 Nonsense_Mutation p.K127* 0.14 TCGA-CA-6717-01 1 119427678 119427678 A G TBX15 Missense_Mutation p.F390L 0.09 tolerated(0.17) benign(0.079) TCGA-CA-6717-01 1 119428102 119428102 A C TBX15 Silent p.T248T 0.13 TCGA-CA-6717-01 1 119466172 119466172 C A TBX15 Missense_Mutation p.D144Y 0.14 deleterious(0) probably_damaging(0.977) TCGA-CA-6717-01 1 119466204 119466204 T G TBX15 Missense_Mutation p.K133T 0.13 deleterious(0) possibly_damaging(0.748) TCGA-CA-6717-01 1 119467441 119467441 C A TBX15 Splice_Site p.X68_splice 0.09 TCGA-CA-6717-01 1 120057028 120057028 T C HSD3B1 Silent p.I294I 0.15 TCGA-CA-6717-01 1 120254720 120254720 T C PHGDH Silent p.D25D 0.08 TCGA-CA-6717-01 1 120461167 120461167 G A NOTCH2 Missense_Mutation p.R1931C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 12061554 12061554 T C MFN2 Missense_Mutation p.S305P 0.09 deleterious(0) possibly_damaging(0.623) TCGA-CA-6717-01 1 120839658 120839658 C A FAM72B 5'UTR 0.14 TCGA-CA-6717-01 1 12359395 12359395 A T VPS13D Missense_Mutation p.K2057M 0.18 benign(0.346) TCGA-CA-6717-01 1 12393364 12393364 T C VPS13D Missense_Mutation p.L2790P 0.23 benign(0.354) TCGA-CA-6717-01 1 12414214 12414214 G A VPS13D Silent p.G3205G 0.18 TCGA-CA-6717-01 1 12785923 12785923 G T AADACL3 Missense_Mutation p.R338I 0.25 deleterious(0) probably_damaging(0.94) TCGA-CA-6717-01 1 13036402 13036402 G T PRAMEF22 Missense_Mutation p.K158N 0.10 tolerated(0.07) probably_damaging(0.978) TCGA-CA-6717-01 1 13475230 13475230 A C PRAMEF18 Nonsense_Mutation p.L300* 0.21 TCGA-CA-6717-01 1 13669276 13669276 C T PRAMEF14 Missense_Mutation p.E352K 0.16 tolerated(0.1) benign(0.079) TCGA-CA-6717-01 1 13717140 13717140 G T PRAMEF17 Missense_Mutation p.E209D 0.35 tolerated(0.3) benign(0.006) TCGA-CA-6717-01 1 1372383 1372383 C A VWA1 Missense_Mutation p.F50L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 1 14106973 14106973 G T PRDM2 Nonsense_Mutation p.E895* 0.11 TCGA-CA-6717-01 1 14107534 14107534 T C PRDM2 Missense_Mutation p.S1082P 0.16 unknown(0) TCGA-CA-6717-01 1 144874013 144874013 C T PDE4DIP Silent p.S1648S 0.11 TCGA-CA-6717-01 1 144874794 144874794 C T PDE4DIP Missense_Mutation p.R1605H 0.11 tolerated(0.16) probably_damaging(1) TCGA-CA-6717-01 1 144931305 144931305 T C PDE4DIP Intron 0.08 TCGA-CA-6717-01 1 145416758 145416758 C A HFE2 Missense_Mutation p.S368Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 145492265 145492265 A C LIX1L Missense_Mutation p.S163R 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-CA-6717-01 1 145492276 145492276 G T LIX1L Missense_Mutation p.K166N 0.18 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 1 145537498 145537498 T C ITGA10 Silent p.N836N 0.25 TCGA-CA-6717-01 1 145542263 145542263 G T ITGA10 Missense_Mutation p.E1163D 0.23 tolerated(0.4) unknown(0) TCGA-CA-6717-01 1 145587747 145587747 G T NUDT17 Silent p.I189I 0.10 TCGA-CA-6717-01 1 145650516 145650516 T C RNF115 Silent p.N65N 0.07 TCGA-CA-6717-01 1 145762259 145762259 A G PDZK1 Missense_Mutation p.D479G 0.09 deleterious(0.02) benign(0.044) TCGA-CA-6717-01 1 146639482 146639482 G A PRKAB2 Nonsense_Mutation p.Q63* 0.25 TCGA-CA-6717-01 1 146672787 146672787 G T FMO5 Missense_Mutation p.A377D 0.09 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 1 147380238 147380238 C T GJA8 Silent p.F52F 0.13 TCGA-CA-6717-01 1 147380824 147380824 C A GJA8 Missense_Mutation p.P248T 0.13 tolerated(0.05) benign(0.211) TCGA-CA-6717-01 1 149871843 149871843 C T BOLA1 Silent p.F77F 0.27 TCGA-CA-6717-01 1 149884959 149884959 C T SV2A Missense_Mutation p.R145Q 0.07 tolerated(0.32) benign(0.002) TCGA-CA-6717-01 1 149916798 149916798 T C OTUD7B Missense_Mutation p.K497R 0.15 deleterious(0.04) benign(0.015) TCGA-CA-6717-01 1 149931639 149931639 C T OTUD7B Missense_Mutation p.R270Q 0.14 deleterious(0) possibly_damaging(0.857) TCGA-CA-6717-01 1 1499998 1499998 G A SSU72 Intron 0.16 TCGA-CA-6717-01 1 150248181 150248181 C T C1orf54 Silent p.Y54Y 0.10 TCGA-CA-6717-01 1 150463184 150463184 C T TARS2 Silent p.F165F 0.22 TCGA-CA-6717-01 1 150705479 150705479 A C CTSS 3'UTR 0.16 TCGA-CA-6717-01 1 150727551 150727551 A C CTSS Missense_Mutation p.S109A 0.22 tolerated(0.68) benign(0.004) TCGA-CA-6717-01 1 150960772 150960772 G T ANXA9 Missense_Mutation p.K269N 0.11 deleterious(0.02) benign(0.111) TCGA-CA-6717-01 1 150997220 150997220 C A PRUNE Missense_Mutation p.L157M 0.10 deleterious(0.04) probably_damaging(0.989) TCGA-CA-6717-01 1 151011459 151011459 A T BNIPL Silent p.S130S 0.26 TCGA-CA-6717-01 1 151040281 151040281 A C MLLT11 3'UTR 0.11 TCGA-CA-6717-01 1 151115001 151115001 G A SEMA6C Silent p.L33L 0.12 TCGA-CA-6717-01 1 151210670 151210670 C A PIP5K1A Silent p.I386I 0.17 TCGA-CA-6717-01 1 151271428 151271428 T G PI4KB Missense_Mutation p.K636T 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 151315632 151315632 C T RFX5 Missense_Mutation p.R294Q 0.14 tolerated_low_confidence(0.08) possibly_damaging(0.624) TCGA-CA-6717-01 1 151338058 151338058 C A SELENBP1 Missense_Mutation p.R342I 0.22 deleterious(0.02) benign(0.126) TCGA-CA-6717-01 1 151499540 151499540 G A CGN Missense_Mutation p.R618Q 0.26 tolerated(0.11) benign(0.091) TCGA-CA-6717-01 1 151641067 151641067 C A SNX27 Missense_Mutation p.L369I 0.18 tolerated(0.15) benign(0.225) TCGA-CA-6717-01 1 151665514 151665514 A G SNX27 Missense_Mutation p.Y506C 0.19 deleterious(0) possibly_damaging(0.784) TCGA-CA-6717-01 1 151678746 151678746 C T CELF3 Silent p.Q360Q 0.18 TCGA-CA-6717-01 1 151733983 151733983 T C MRPL9 Missense_Mutation p.N178D 0.19 tolerated(0.21) benign(0.008) TCGA-CA-6717-01 1 151810351 151810351 G T C2CD4D 3'UTR 0.13 TCGA-CA-6717-01 1 152058000 152058000 G T TCHHL1 Missense_Mutation p.L720M 0.26 tolerated(0.28) benign(0.014) TCGA-CA-6717-01 1 152080447 152080447 A G TCHH Missense_Mutation p.I1749T 0.22 unknown(0) TCGA-CA-6717-01 1 152080951 152080951 A G TCHH Missense_Mutation p.F1581S 0.09 unknown(0) TCGA-CA-6717-01 1 152128887 152128887 G A RPTN Missense_Mutation p.R230W 0.10 deleterious(0) possibly_damaging(0.462) TCGA-CA-6717-01 1 152130231 152130231 G T RPTN Silent p.L45L 0.17 TCGA-CA-6717-01 1 152130384 152130384 A G RPTN Intron 0.18 TCGA-CA-6717-01 1 152192104 152192104 G A HRNR Silent p.S667S 0.27 TCGA-CA-6717-01 1 152193029 152193029 G A HRNR Missense_Mutation p.S359F 0.11 unknown(0) TCGA-CA-6717-01 1 152193531 152193531 G A HRNR Missense_Mutation p.R192C 0.18 unknown(0) TCGA-CA-6717-01 1 152193881 152193881 A C HRNR Missense_Mutation p.L75R 0.20 probably_damaging(0.999) TCGA-CA-6717-01 1 152287375 152287375 C A FLG Intron 0.56 TCGA-CA-6717-01 1 152322976 152322976 G T FLG2 3'UTR 0.32 TCGA-CA-6717-01 1 152324261 152324261 T C FLG2 Missense_Mutation p.T2001A 0.11 possibly_damaging(0.636) TCGA-CA-6717-01 1 152328244 152328244 G T FLG2 Missense_Mutation p.S673Y 0.24 unknown(0) TCGA-CA-6717-01 1 152328394 152328394 G T FLG2 Missense_Mutation p.S623Y 0.13 unknown(0) TCGA-CA-6717-01 1 152328873 152328873 G T FLG2 Silent p.S463S 0.10 TCGA-CA-6717-01 1 152382969 152382969 C T CRNN Missense_Mutation p.E197K 0.21 tolerated(0.07) benign(0.147) TCGA-CA-6717-01 1 152484094 152484094 T C LCE5A Silent p.C28C 0.08 TCGA-CA-6717-01 1 152488241 152488241 G A CRCT1 3'UTR 0.27 TCGA-CA-6717-01 1 152692570 152692570 G T C1orf68 Missense_Mutation p.Q191H 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CA-6717-01 1 152692608 152692608 C T C1orf68 Missense_Mutation p.S204L 0.24 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-CA-6717-01 1 152732460 152732460 C T KPRP Silent p.F132F 0.08 TCGA-CA-6717-01 1 152732723 152732723 A G KPRP Missense_Mutation p.Q220R 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 1 152733842 152733842 A G KPRP 3'UTR 0.15 TCGA-CA-6717-01 1 152785075 152785075 C A LCE1B Nonsense_Mutation p.C51* 0.09 TCGA-CA-6717-01 1 152944742 152944742 T C SPRR4 3'UTR 0.09 TCGA-CA-6717-01 1 152975595 152975595 T A SPRR3 Missense_Mutation p.F33L 0.12 tolerated(0.44) benign(0.184) TCGA-CA-6717-01 1 152975654 152975654 T G SPRR3 Missense_Mutation p.I53S 0.24 tolerated(0.06) possibly_damaging(0.697) TCGA-CA-6717-01 1 152975946 152975946 A C SPRR3 Silent p.P150P 0.10 TCGA-CA-6717-01 1 153005153 153005153 C A SPRR1B 3'UTR 0.10 TCGA-CA-6717-01 1 153028984 153028984 C A SPRR2A 3'UTR 0.08 TCGA-CA-6717-01 1 153122328 153122328 T C SPRR2G 3'UTR 0.09 TCGA-CA-6717-01 1 153177188 153177188 C T LELP1 Missense_Mutation p.S2L 0.15 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-CA-6717-01 1 153430419 153430419 C T S100A7 Missense_Mutation p.D57N 0.09 tolerated(1) benign(0) TCGA-CA-6717-01 1 153516347 153516347 T C S100A4 Missense_Mutation p.N65S 0.08 deleterious(0) possibly_damaging(0.708) TCGA-CA-6717-01 1 153520893 153520893 A G S100A3 Silent p.C23C 0.12 TCGA-CA-6717-01 1 153920537 153920537 A C CRTC2 3'UTR 0.21 TCGA-CA-6717-01 1 153945527 153945527 A C CREB3L4 Missense_Mutation p.K239T 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 154101769 154101769 T G NUP210L Silent p.V354V 0.11 TCGA-CA-6717-01 1 154112416 154112416 G A NUP210L Silent p.Y193Y 0.19 TCGA-CA-6717-01 1 154171941 154171941 T G C1orf189 Missense_Mutation p.N90H 0.09 tolerated(0.08) benign(0.026) TCGA-CA-6717-01 1 154235651 154235651 T C UBAP2L Intron 0.13 TCGA-CA-6717-01 1 154316889 154316889 G A ATP8B2 Missense_Mutation p.G718D 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 154317220 154317220 G A ATP8B2 Missense_Mutation p.V782I 0.27 tolerated(0.44) benign(0.002) TCGA-CA-6717-01 1 15441012 15441012 G A KAZN Missense_Mutation p.D737N 0.08 tolerated_low_confidence(0.12) probably_damaging(0.985) TCGA-CA-6717-01 1 154458462 154458462 G A SHE Nonsense_Mutation p.R420* 0.13 TCGA-CA-6717-01 1 154574801 154574801 C T ADAR Missense_Mutation p.R106K 0.19 tolerated(0.68) benign(0.071) TCGA-CA-6717-01 1 154574849 154574849 A C ADAR Missense_Mutation p.I90S 0.16 tolerated_low_confidence(0.42) benign(0.004) TCGA-CA-6717-01 1 154680462 154680462 C T KCNN3 Missense_Mutation p.S729N 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-CA-6717-01 1 155014314 155014314 C A DCST1 Missense_Mutation p.F291L 0.10 deleterious(0) possibly_damaging(0.844) TCGA-CA-6717-01 1 155025178 155025178 G T ADAM15 Missense_Mutation p.E37D 0.12 deleterious(0.01) possibly_damaging(0.852) TCGA-CA-6717-01 1 155029576 155029576 G A ADAM15 Missense_Mutation p.D383N 0.17 deleterious(0.02) probably_damaging(0.967) TCGA-CA-6717-01 1 155154359 155154359 C T TRIM46 Silent p.G540G 0.22 TCGA-CA-6717-01 1 155210925 155210925 A G GBA 5'UTR 0.12 TCGA-CA-6717-01 1 155225979 155225979 A G SCAMP3 3'UTR 0.29 TCGA-CA-6717-01 1 155226555 155226555 C T SCAMP3 Silent p.P269P 0.14 TCGA-CA-6717-01 1 155233078 155233078 A C CLK2 Silent p.P476P 0.18 TCGA-CA-6717-01 1 155247639 155247639 C A HCN3 Silent p.I86I 0.07 TCGA-CA-6717-01 1 155255670 155255670 G A HCN3 Silent p.K464K 0.22 TCGA-CA-6717-01 1 155264389 155264389 G T PKLR Silent p.V283V 0.08 TCGA-CA-6717-01 1 155288469 155288469 C G FDPS Missense_Mutation p.T233S 0.12 deleterious(0.02) possibly_damaging(0.815) TCGA-CA-6717-01 1 155292263 155292263 A G RUSC1 Silent p.P233P 0.11 TCGA-CA-6717-01 1 155447729 155447729 A G ASH1L Silent p.L1644L 0.13 TCGA-CA-6717-01 1 155449041 155449041 T G ASH1L Missense_Mutation p.N1207T 0.13 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-CA-6717-01 1 155449623 155449623 T G ASH1L Missense_Mutation p.K1013T 0.20 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-CA-6717-01 1 155451037 155451037 T C ASH1L Missense_Mutation p.T542A 0.10 tolerated_low_confidence(0.11) benign(0.002) TCGA-CA-6717-01 1 155774901 155774901 G A GON4L Missense_Mutation p.T495M 0.17 deleterious(0) possibly_damaging(0.897) TCGA-CA-6717-01 1 155870103 155870103 A G RIT1 3'UTR 0.16 TCGA-CA-6717-01 1 155989878 155989878 T G SSR2 Missense_Mutation p.K27N 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 156263121 156263121 A C C1orf85 Missense_Mutation p.Y349D 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 156281895 156281895 A G CCT3 Silent p.T364T 0.17 TCGA-CA-6717-01 1 156316769 156316769 A C TSACC Missense_Mutation p.K125T 0.10 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-CA-6717-01 1 156533379 156533379 G T IQGAP3 Silent p.I195I 0.08 TCGA-CA-6717-01 1 156533388 156533388 G A IQGAP3 Silent p.I192I 0.11 TCGA-CA-6717-01 1 156563340 156563340 T C APOA1BP Silent p.I219I 0.09 TCGA-CA-6717-01 1 156565428 156565428 T G GPATCH4 Silent p.P235P 0.23 TCGA-CA-6717-01 1 156641152 156641152 G T NES Missense_Mutation p.P943Q 0.19 deleterious(0.02) probably_damaging(0.926) TCGA-CA-6717-01 1 156641743 156641743 G T NES Missense_Mutation p.S746Y 0.12 tolerated(0.24) benign(0.059) TCGA-CA-6717-01 1 156641994 156641994 C A NES Missense_Mutation p.E662D 0.31 deleterious(0.01) possibly_damaging(0.678) TCGA-CA-6717-01 1 156642136 156642136 T G NES Missense_Mutation p.K615T 0.18 tolerated(0.17) benign(0.01) TCGA-CA-6717-01 1 156704174 156704174 G A RRNAD1 Missense_Mutation p.R337Q 0.27 tolerated(0.1) benign(0.022) TCGA-CA-6717-01 1 156713539 156713539 G A HDGF Silent p.G223G 0.11 TCGA-CA-6717-01 1 156764559 156764559 A C PRCC Missense_Mutation p.K428Q 0.13 tolerated(0.09) possibly_damaging(0.758) TCGA-CA-6717-01 1 156770179 156770179 A C PRCC Missense_Mutation p.E468A 0.10 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 1 156779563 156779563 C A SH2D2A Nonsense_Mutation p.E212* 0.10 TCGA-CA-6717-01 1 156814063 156814063 T C INSRR Missense_Mutation p.D916G 0.28 tolerated(0.11) benign(0.031) TCGA-CA-6717-01 1 156939143 156939143 G T ARHGEF11 Silent p.L252L 0.18 TCGA-CA-6717-01 1 157068657 157068657 C A ETV3L Missense_Mutation p.K109N 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 157103857 157103857 C A ETV3 Intron 0.35 TCGA-CA-6717-01 1 157494210 157494210 G T FCRL5 Missense_Mutation p.L700M 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 1 157504389 157504389 G T FCRL5 Intron 0.23 TCGA-CA-6717-01 1 157557748 157557748 C A FCRL4 Missense_Mutation p.A157S 0.15 tolerated(0.08) probably_damaging(0.93) TCGA-CA-6717-01 1 157646403 157646403 T G FCRL3 3'UTR 0.32 TCGA-CA-6717-01 1 157666894 157666894 C T FCRL3 Intron 0.25 TCGA-CA-6717-01 1 157667362 157667362 C A FCRL3 Intron 0.26 TCGA-CA-6717-01 1 157718725 157718725 C A FCRL2 Nonsense_Mutation p.E445* 0.09 TCGA-CA-6717-01 1 157805676 157805676 C A CD5L Nonsense_Mutation p.E109* 0.19 TCGA-CA-6717-01 1 158227601 158227601 A C CD1A 3'UTR 0.21 TCGA-CA-6717-01 1 158259833 158259833 G T CD1C 5'UTR 0.16 TCGA-CA-6717-01 1 158262632 158262632 G A CD1C Missense_Mutation p.S286N 0.09 deleterious(0.01) probably_damaging(0.96) TCGA-CA-6717-01 1 158299208 158299208 G A CD1B Missense_Mutation p.R280W 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 1 158300629 158300629 G A CD1B Silent p.F95F 0.13 TCGA-CA-6717-01 1 158325179 158325179 A C CD1E Missense_Mutation p.S149R 0.30 deleterious(0.04) benign(0.139) TCGA-CA-6717-01 1 158389737 158389737 C A OR10K2 Missense_Mutation p.R307I 0.13 deleterious(0.01) possibly_damaging(0.62) TCGA-CA-6717-01 1 158389894 158389894 C T OR10K2 Missense_Mutation p.A255T 0.09 tolerated(0.07) probably_damaging(1) TCGA-CA-6717-01 1 158390564 158390564 G T OR10K2 Missense_Mutation p.F31L 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-CA-6717-01 1 158390577 158390577 A G OR10K2 Missense_Mutation p.L27P 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 158585163 158585163 G A SPTA1 Missense_Mutation p.R2211C 0.10 deleterious(0.04) probably_damaging(0.976) TCGA-CA-6717-01 1 158587835 158587835 A G SPTA1 Missense_Mutation p.L2181P 0.10 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 1 158650471 158650471 C T SPTA1 Missense_Mutation p.E194K 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 158669996 158669996 A C OR6K2 Silent p.V149V 0.11 TCGA-CA-6717-01 1 158687822 158687822 G T OR6K3 Missense_Mutation p.F28L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 1 158735955 158735955 C T OR6N1 Missense_Mutation p.R173H 0.12 tolerated(0.6) benign(0.005) TCGA-CA-6717-01 1 158812142 158812142 G T MNDA Nonsense_Mutation p.E67* 0.09 TCGA-CA-6717-01 1 158813906 158813906 T C MNDA Silent p.F188F 0.09 TCGA-CA-6717-01 1 158909287 158909287 T G PYHIN1 Intron 0.15 TCGA-CA-6717-01 1 158911877 158911877 C A PYHIN1 Silent p.S230S 0.09 TCGA-CA-6717-01 1 158985742 158985742 A C IFI16 Missense_Mutation p.K116Q 0.09 tolerated(0.52) benign(0.113) TCGA-CA-6717-01 1 159043032 159043032 C A AIM2 Missense_Mutation p.E86D 0.15 tolerated(0.61) benign(0.115) TCGA-CA-6717-01 1 159166184 159166184 C A CADM3 Missense_Mutation p.P275H 0.14 tolerated(0.49) probably_damaging(0.946) TCGA-CA-6717-01 1 159176280 159176280 G A DARC 3'UTR 0.16 TCGA-CA-6717-01 1 159275939 159275939 A C FCER1A Missense_Mutation p.N165H 0.17 deleterious(0.04) possibly_damaging(0.834) TCGA-CA-6717-01 1 159505732 159505732 C A OR10J5 Missense_Mutation p.K22N 0.29 tolerated(0.09) benign(0.002) TCGA-CA-6717-01 1 1597410 1597410 G T SLC35E2B Silent p.I343I 0.11 TCGA-CA-6717-01 1 159778098 159778098 C A FCRL6 Missense_Mutation p.F61L 0.20 tolerated(0.69) benign(0.01) TCGA-CA-6717-01 1 159860277 159860277 C A CCDC19 Nonsense_Mutation p.E89* 0.15 TCGA-CA-6717-01 1 15987448 15987448 T G RSC1A1 Missense_Mutation p.L362R 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 15987498 15987498 A T RSC1A1 Missense_Mutation p.I379F 0.12 tolerated(0.29) benign(0.022) TCGA-CA-6717-01 1 159921437 159921437 T C SLAMF9 3'UTR 0.38 TCGA-CA-6717-01 1 159921497 159921497 C T SLAMF9 Missense_Mutation p.R275K 0.15 deleterious(0.04) probably_damaging(0.956) TCGA-CA-6717-01 1 160064670 160064670 A G IGSF8 Missense_Mutation p.V144A 0.09 deleterious(0) possibly_damaging(0.454) TCGA-CA-6717-01 1 160094964 160094964 G A ATP1A2 Silent p.Q223Q 0.13 TCGA-CA-6717-01 1 160100265 160100265 G A ATP1A2 Missense_Mutation p.D569N 0.13 tolerated(0.27) benign(0.157) TCGA-CA-6717-01 1 160100284 160100284 T C ATP1A2 Missense_Mutation p.F575S 0.14 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 1 160137077 160137077 A G ATP1A4 Missense_Mutation p.T456A 0.27 tolerated(1) benign(0.042) TCGA-CA-6717-01 1 160146350 160146350 C A ATP1A4 Missense_Mutation p.L850M 0.24 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 1 160208485 160208485 T C DCAF8 Missense_Mutation p.D259G 0.26 deleterious(0.01) probably_damaging(0.929) TCGA-CA-6717-01 1 160341925 160341925 C A NHLH1 3'UTR 0.30 TCGA-CA-6717-01 1 160456471 160456471 G A SLAMF6 3'UTR 0.23 TCGA-CA-6717-01 1 160523720 160523720 T G CD84 Missense_Mutation p.N202T 0.24 deleterious(0.01) possibly_damaging(0.589) TCGA-CA-6717-01 1 160607074 160607074 G T SLAMF1 Silent p.R108R 0.08 TCGA-CA-6717-01 1 161017012 161017012 C A ARHGAP30 3'UTR 0.18 TCGA-CA-6717-01 1 161069460 161069460 A G KLHDC9 Missense_Mutation p.K254E 0.14 deleterious(0.03) benign(0.001) TCGA-CA-6717-01 1 161126780 161126780 G A UFC1 Missense_Mutation p.R55Q 0.11 tolerated(0.18) benign(0.17) TCGA-CA-6717-01 1 161137147 161137147 C T PPOX Intron 0.11 TCGA-CA-6717-01 1 161166241 161166241 G A ADAMTS4 Intron 0.16 TCGA-CA-6717-01 1 161279762 161279762 C T MPZ 5'UTR 0.16 TCGA-CA-6717-01 1 161512866 161512866 C T FCGR3A Missense_Mutation p.R270Q 0.18 tolerated(0.56) benign(0.03) TCGA-CA-6717-01 1 161681260 161681260 C T FCRLA Silent p.V188V 0.10 TCGA-CA-6717-01 1 161683150 161683150 A G FCRLA Missense_Mutation p.T377A 0.17 tolerated(0.08) benign(0.016) TCGA-CA-6717-01 1 161928306 161928306 C T ATF6 Silent p.I625I 0.17 TCGA-CA-6717-01 1 161954657 161954657 C T OLFML2B Missense_Mutation p.V530I 0.12 deleterious(0.02) possibly_damaging(0.86) TCGA-CA-6717-01 1 16200623 16200623 A C SPEN Intron 0.16 TCGA-CA-6717-01 1 16237705 16237705 G A SPEN Silent p.R384R 0.19 TCGA-CA-6717-01 1 16254721 16254721 A G SPEN Silent p.E662E 0.08 TCGA-CA-6717-01 1 16258759 16258759 T C SPEN Silent p.A2008A 0.15 TCGA-CA-6717-01 1 16264038 16264038 A C SPEN Silent p.P3469P 0.25 TCGA-CA-6717-01 1 162824619 162824619 G A C1orf110 Missense_Mutation p.S282F 0.22 tolerated(0.08) probably_damaging(0.919) TCGA-CA-6717-01 1 162829254 162829254 C T C1orf110 Silent p.Q61Q 0.13 TCGA-CA-6717-01 1 163117172 163117172 C T RGS5 Missense_Mutation p.R173H 0.21 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 163325197 163325197 T A NUF2 Missense_Mutation p.Y445N 0.10 tolerated(0.35) benign(0) TCGA-CA-6717-01 1 16354383 16354383 C A CLCNKA Missense_Mutation p.F283L 0.15 tolerated(1) benign(0.026) TCGA-CA-6717-01 1 16359706 16359706 C T CLCNKA Silent p.F657F 0.11 TCGA-CA-6717-01 1 16378244 16378244 T G CLCNKB Missense_Mutation p.F446C 0.13 tolerated(0.16) possibly_damaging(0.489) TCGA-CA-6717-01 1 16383793 16383793 T G CLCNKB 3'UTR 0.08 TCGA-CA-6717-01 1 16464889 16464889 T C EPHA2 Missense_Mutation p.E287G 0.11 tolerated(0.1) benign(0) TCGA-CA-6717-01 1 165380222 165380222 C A RXRG Missense_Mutation p.K249N 0.13 tolerated(0.06) probably_damaging(0.996) TCGA-CA-6717-01 1 165533033 165533033 C T LRRC52 Missense_Mutation p.S305L 0.21 tolerated_low_confidence(0.15) benign(0.001) TCGA-CA-6717-01 1 165533081 165533081 T G LRRC52 3'UTR 0.10 TCGA-CA-6717-01 1 165651364 165651364 G A ALDH9A1 Missense_Mutation p.S191L 0.22 deleterious(0.01) benign(0.279) TCGA-CA-6717-01 1 165712409 165712409 G A TMCO1 Nonsense_Mutation p.R206* 0.19 TCGA-CA-6717-01 1 166039488 166039488 G T FAM78B Missense_Mutation p.P259H 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 166958619 166958619 T G MAEL Silent p.A10A 0.20 TCGA-CA-6717-01 1 166974588 166974588 C T MAEL Nonsense_Mutation p.R267* 0.09 TCGA-CA-6717-01 1 166991144 166991144 T G MAEL 3'UTR 0.24 TCGA-CA-6717-01 1 167023534 167023534 C T GPA33 3'UTR 0.19 TCGA-CA-6717-01 1 167792275 167792275 A G ADCY10 Missense_Mutation p.F1380S 0.15 tolerated(0.74) benign(0.016) TCGA-CA-6717-01 1 167798582 167798582 A C ADCY10 Missense_Mutation p.F1225V 0.09 tolerated(0.42) benign(0.269) TCGA-CA-6717-01 1 167944223 167944223 A G DCAF6 Silent p.Q136Q 0.07 TCGA-CA-6717-01 1 168073734 168073734 C T GPR161 Missense_Mutation p.G139R 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-CA-6717-01 1 168211911 168211911 C T SFT2D2 3'UTR 0.13 TCGA-CA-6717-01 1 168665777 168665777 T C DPT 3'UTR 0.11 TCGA-CA-6717-01 1 169101476 169101476 C G ATP1B1 3'UTR 0.09 TCGA-CA-6717-01 1 16913590 16913590 C A NBPF1 Nonsense_Mutation p.E245* 0.06 TCGA-CA-6717-01 1 169293678 169293678 G A NME7 Nonsense_Mutation p.R22* 0.37 TCGA-CA-6717-01 1 169351425 169351425 C A BLZF1 Missense_Mutation p.S308Y 0.20 tolerated(0.15) benign(0.066) TCGA-CA-6717-01 1 16935270 16935270 A G NBPF1 5'UTR 0.10 TCGA-CA-6717-01 1 169356258 169356258 T C BLZF1 Silent p.V347V 0.14 TCGA-CA-6717-01 1 169366478 169366478 T A CCDC181 Missense_Mutation p.K455I 0.11 deleterious(0) probably_damaging(0.914) TCGA-CA-6717-01 1 169391420 169391420 G T CCDC181 Silent p.I83I 0.22 TCGA-CA-6717-01 1 169509825 169509825 A C F5 Silent p.T1501T 0.09 TCGA-CA-6717-01 1 169511326 169511326 A C F5 Missense_Mutation p.F1001C 0.09 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-CA-6717-01 1 169511725 169511725 G A F5 Missense_Mutation p.P868L 0.08 tolerated_low_confidence(0.65) benign(0) TCGA-CA-6717-01 1 169513693 169513693 C A F5 Missense_Mutation p.D606Y 0.29 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 169521942 169521942 G T F5 Missense_Mutation p.F383L 0.07 tolerated(0.08) probably_damaging(0.961) TCGA-CA-6717-01 1 169572406 169572406 C A SELP Missense_Mutation p.M521I 0.18 tolerated(0.06) benign(0.126) TCGA-CA-6717-01 1 169677626 169677626 C T SELL Missense_Mutation p.R148K 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 1 169677713 169677713 G T SELL Missense_Mutation p.S119Y 0.19 deleterious(0) probably_damaging(0.926) TCGA-CA-6717-01 1 169699668 169699668 G T SELE Missense_Mutation p.S207Y 0.16 deleterious(0.01) benign(0.088) TCGA-CA-6717-01 1 169702042 169702042 T G SELE Silent p.T45T 0.18 TCGA-CA-6717-01 1 169790857 169790857 A G C1orf112 Missense_Mutation p.K247R 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 1 169798418 169798418 A C C1orf112 Missense_Mutation p.K381T 0.12 tolerated(0.06) benign(0.138) TCGA-CA-6717-01 1 169953798 169953798 G A KIFAP3 Nonsense_Mutation p.R440* 0.09 TCGA-CA-6717-01 1 170115204 170115204 G A METTL11B 5'UTR 0.26 TCGA-CA-6717-01 1 170115387 170115388 - A METTL11B Frame_Shift_Ins p.I49Nfs*17 0.11 TCGA-CA-6717-01 1 170511686 170511686 G T GORAB Missense_Mutation p.E183D 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6717-01 1 170521542 170521542 T G GORAB Missense_Mutation p.F375C 0.29 tolerated_low_confidence(0.24) benign(0.003) TCGA-CA-6717-01 1 170955788 170955788 C T MROH9 Silent p.I272I 0.25 TCGA-CA-6717-01 1 170959005 170959005 A G MROH9 Missense_Mutation p.I297V 0.23 deleterious(0.04) possibly_damaging(0.55) TCGA-CA-6717-01 1 170994556 170994556 T G MROH9 Missense_Mutation p.L759W 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 171083358 171083358 A G FMO3 Missense_Mutation p.N347D 0.15 tolerated(0.71) benign(0.042) TCGA-CA-6717-01 1 171118896 171118896 T C FMO6P Silent p.N275N 0.21 TCGA-CA-6717-01 1 171174578 171174578 G T FMO2 Nonsense_Mutation p.G330* 0.10 TCGA-CA-6717-01 1 171481225 171481225 G A PRRC2C 5'UTR 0.16 TCGA-CA-6717-01 1 171527105 171527105 T G PRRC2C Missense_Mutation p.S1950A 0.19 benign(0.031) TCGA-CA-6717-01 1 171553218 171553218 C A PRRC2C Silent p.A2509A 0.12 TCGA-CA-6717-01 1 171561141 171561141 A G PRRC2C 3'UTR 0.40 TCGA-CA-6717-01 1 172007555 172007555 A C DNM3 Missense_Mutation p.N316H 0.25 tolerated(0.19) benign(0.107) TCGA-CA-6717-01 1 1720623 1720623 A G GNB1 Missense_Mutation p.M262T 0.14 tolerated(0.57) benign(0.011) TCGA-CA-6717-01 1 172434500 172434500 A C C1orf105 Missense_Mutation p.T135P 0.09 deleterious(0.02) possibly_damaging(0.702) TCGA-CA-6717-01 1 172558187 172558187 G A SUCO Missense_Mutation p.R649Q 0.21 tolerated(0.11) benign(0.095) TCGA-CA-6717-01 1 17273373 17273373 C T CROCC Missense_Mutation p.R801W 0.11 probably_damaging(0.978) TCGA-CA-6717-01 1 17326988 17326988 C T ATP13A2 Silent p.A249A 0.12 TCGA-CA-6717-01 1 17345306 17345306 G T SDHB 3'UTR 0.23 TCGA-CA-6717-01 1 173542431 173542431 A C SLC9C2 Missense_Mutation p.H312Q 0.13 tolerated(0.34) benign(0.038) TCGA-CA-6717-01 1 173567137 173567137 G T SLC9C2 Nonsense_Mutation p.S88* 0.24 TCGA-CA-6717-01 1 173794477 173794477 C A DARS2 Nonsense_Mutation p.S37* 0.29 TCGA-CA-6717-01 1 17395461 17395461 T C PADI2 3'UTR 0.46 TCGA-CA-6717-01 1 174210671 174210671 A C RABGAP1L Missense_Mutation p.K198T 0.12 tolerated(0.12) benign(0.196) TCGA-CA-6717-01 1 174221709 174221709 A C RABGAP1L Missense_Mutation p.K323Q 0.09 tolerated(0.15) possibly_damaging(0.574) TCGA-CA-6717-01 1 174221712 174221712 G T RABGAP1L Nonsense_Mutation p.E324* 0.22 TCGA-CA-6717-01 1 174668743 174668743 C T RABGAP1L Silent p.F660F 0.17 TCGA-CA-6717-01 1 174973965 174973965 T G CACYBP Missense_Mutation p.N77K 0.10 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 1 175292557 175292557 A C TNR Missense_Mutation p.M1338R 0.12 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 1 175325525 175325525 G T TNR Missense_Mutation p.H1016Q 0.15 tolerated(0.49) possibly_damaging(0.471) TCGA-CA-6717-01 1 175996718 175996718 G A RFWD2 Silent p.F573F 0.23 TCGA-CA-6717-01 1 17601227 17601227 C T PADI3 Missense_Mutation p.A418V 0.09 tolerated(1) benign(0.023) TCGA-CA-6717-01 1 176525600 176525600 G T PAPPA2 Nonsense_Mutation p.E48* 0.15 TCGA-CA-6717-01 1 176526154 176526154 A C PAPPA2 Missense_Mutation p.K232N 0.21 tolerated_low_confidence(0.15) benign(0) TCGA-CA-6717-01 1 176563904 176563904 T C PAPPA2 Silent p.S388S 0.08 TCGA-CA-6717-01 1 17666235 17666235 C T PADI4 Silent p.F193F 0.10 TCGA-CA-6717-01 1 176708790 176708790 G T PAPPA2 Missense_Mutation p.R1276I 0.12 deleterious(0.02) benign(0.009) TCGA-CA-6717-01 1 176762728 176762728 C A PAPPA2 Missense_Mutation p.P1685T 0.22 tolerated(0.29) probably_damaging(0.981) TCGA-CA-6717-01 1 176838134 176838134 T G ASTN1 Missense_Mutation p.N1165H 0.08 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 1 177226267 177226267 C T BRINP2 Intron 0.17 TCGA-CA-6717-01 1 177249921 177249921 C T BRINP2 Missense_Mutation p.R537W 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 177249957 177249957 C T BRINP2 Missense_Mutation p.R549C 0.14 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 1 17727839 17727839 T G PADI6 RNA 0.13 TCGA-CA-6717-01 1 177911160 177911160 A G SEC16B Missense_Mutation p.Y633H 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 178411881 178411881 G T RASAL2 Missense_Mutation p.K333N 0.09 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 1 178411890 178411890 C A RASAL2 Missense_Mutation p.F336L 0.13 tolerated(0.27) probably_damaging(0.974) TCGA-CA-6717-01 1 179076915 179076915 T C ABL2 Missense_Mutation p.N1163D 0.18 tolerated_low_confidence(0.07) possibly_damaging(0.593) TCGA-CA-6717-01 1 179077894 179077894 T A ABL2 Missense_Mutation p.K836N 0.23 tolerated_low_confidence(0.06) benign(0.131) TCGA-CA-6717-01 1 179310207 179310207 T G SOAT1 Missense_Mutation p.F181C 0.21 deleterious(0) probably_damaging(0.923) TCGA-CA-6717-01 1 179319502 179319502 T G SOAT1 Nonsense_Mutation p.Y462* 0.19 TCGA-CA-6717-01 1 179319545 179319545 G A SOAT1 Missense_Mutation p.V477M 0.05 tolerated(0.51) possibly_damaging(0.746) TCGA-CA-6717-01 1 179320540 179320540 C A SOAT1 Silent p.V513V 0.08 TCGA-CA-6717-01 1 179363081 179363081 A G AXDND1 Missense_Mutation p.I303V 0.11 tolerated(0.51) benign(0.016) TCGA-CA-6717-01 1 179437795 179437795 C A AXDND1 Intron 0.30 TCGA-CA-6717-01 1 179460766 179460766 T C AXDND1 Silent p.L729L 0.07 TCGA-CA-6717-01 1 179461991 179461991 T A AXDND1 Missense_Mutation p.C765S 0.13 tolerated(0.06) benign(0) TCGA-CA-6717-01 1 179600032 179600032 C T TDRD5 Missense_Mutation p.A368V 0.09 tolerated(0.16) benign(0.024) TCGA-CA-6717-01 1 179631260 179631260 C A TDRD5 Missense_Mutation p.P782T 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 180022290 180022290 T C CEP350 Missense_Mutation p.S1660P 0.14 possibly_damaging(0.866) TCGA-CA-6717-01 1 180062688 180062688 C T CEP350 Missense_Mutation p.P2483L 0.16 benign(0.009) TCGA-CA-6717-01 1 180063239 180063239 A G CEP350 Missense_Mutation p.K2667E 0.16 benign(0.005) TCGA-CA-6717-01 1 180243561 180243561 C A LHX4 Silent p.I340I 0.21 TCGA-CA-6717-01 1 180257497 180257497 A G ACBD6 3'UTR 0.14 TCGA-CA-6717-01 1 180793938 180793938 C T XPR1 Silent p.I271I 0.08 TCGA-CA-6717-01 1 181018257 181018257 C T MR1 Missense_Mutation p.S46L 0.10 tolerated(0.1) probably_damaging(0.999) TCGA-CA-6717-01 1 181059898 181059898 T C IER5 3'UTR 0.26 TCGA-CA-6717-01 1 181480509 181480509 G T CACNA1E Missense_Mutation p.E125D 0.09 tolerated(1) benign(0.217) TCGA-CA-6717-01 1 181690893 181690893 G T CACNA1E Splice_Site p.X653_splice 0.15 TCGA-CA-6717-01 1 181701637 181701637 G T CACNA1E Missense_Mutation p.M805I 0.12 tolerated(0.42) benign(0.019) TCGA-CA-6717-01 1 181707560 181707560 A C CACNA1E Missense_Mutation p.K1204Q 0.09 deleterious(0) benign(0.003) TCGA-CA-6717-01 1 181745291 181745291 G A CACNA1E Missense_Mutation p.D1732N 0.15 deleterious(0) possibly_damaging(0.539) TCGA-CA-6717-01 1 182027107 182027107 C T ZNF648 Silent p.A13A 0.20 TCGA-CA-6717-01 1 182356408 182356408 G A GLUL Silent p.F62F 0.10 TCGA-CA-6717-01 1 182458159 182458159 T G RGSL1 Missense_Mutation p.F513L 0.18 tolerated(0.06) benign(0) TCGA-CA-6717-01 1 182496822 182496822 G T RGSL1 Missense_Mutation p.K680N 0.11 deleterious(0) probably_damaging(0.938) TCGA-CA-6717-01 1 182554607 182554607 C A RNASEL Missense_Mutation p.L445F 0.09 tolerated(0.22) benign(0.255) TCGA-CA-6717-01 1 182775447 182775447 C A NPL Intron 0.17 TCGA-CA-6717-01 1 182856495 182856495 T G DHX9 Missense_Mutation p.F1247V 0.15 tolerated_low_confidence(0.11) unknown(0) TCGA-CA-6717-01 1 182872247 182872247 T C SHCBP1L Missense_Mutation p.N546S 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 1 182873344 182873344 T G SHCBP1L Missense_Mutation p.I520L 0.18 tolerated(0.05) benign(0.184) TCGA-CA-6717-01 1 182908537 182908537 T G SHCBP1L Intron 0.21 TCGA-CA-6717-01 1 182922179 182922179 G T SHCBP1L Silent p.V30V 0.32 TCGA-CA-6717-01 1 183192308 183192308 A C LAMC2 Missense_Mutation p.S268R 0.16 tolerated(0.08) benign(0.014) TCGA-CA-6717-01 1 183515282 183515282 C T SMG7 Missense_Mutation p.P805L 0.09 tolerated_low_confidence(0.1) possibly_damaging(0.859) TCGA-CA-6717-01 1 183536350 183536350 A G NCF2 Missense_Mutation p.F282L 0.31 deleterious(0) probably_damaging(0.945) TCGA-CA-6717-01 1 183617630 183617630 G T APOBEC4 Nonsense_Mutation p.S96* 0.24 TCGA-CA-6717-01 1 183853868 183853868 G T RGL1 Missense_Mutation p.K284N 0.09 deleterious(0.01) possibly_damaging(0.845) TCGA-CA-6717-01 1 184792415 184792415 A C FAM129A Missense_Mutation p.L291V 0.17 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 1 184868321 184868321 C A FAM129A Missense_Mutation p.L59F 0.09 deleterious(0) probably_damaging(0.945) TCGA-CA-6717-01 1 185062283 185062283 T G RNF2 Missense_Mutation p.I113M 0.19 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 1 185089609 185089609 A C TRMT1L Missense_Mutation p.L619V 0.20 tolerated(0.51) benign(0.004) TCGA-CA-6717-01 1 185173907 185173907 T C SWT1 Missense_Mutation p.V582A 0.09 deleterious(0) benign(0.08) TCGA-CA-6717-01 1 185191073 185191073 C A SWT1 Silent p.I738I 0.18 TCGA-CA-6717-01 1 185245755 185245755 T G SWT1 Missense_Mutation p.F843C 0.10 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 1 185268896 185268896 A C IVNS1ABP Missense_Mutation p.L541V 0.10 tolerated(0.34) benign(0.026) TCGA-CA-6717-01 1 185269663 185269663 C T IVNS1ABP Missense_Mutation p.R383Q 0.29 deleterious(0.01) probably_damaging(0.957) TCGA-CA-6717-01 1 185704013 185704013 A C HMCN1 Missense_Mutation p.E34D 0.19 benign(0) TCGA-CA-6717-01 1 185892648 185892648 G A HMCN1 Missense_Mutation p.R383Q 0.24 possibly_damaging(0.885) TCGA-CA-6717-01 1 186037119 186037119 G A HMCN1 Missense_Mutation p.R2620Q 0.09 benign(0.034) TCGA-CA-6717-01 1 186047319 186047319 G T HMCN1 Nonsense_Mutation p.E2856* 0.17 TCGA-CA-6717-01 1 186083141 186083141 G T HMCN1 Missense_Mutation p.S3721I 0.18 probably_damaging(0.997) TCGA-CA-6717-01 1 186270758 186270758 C T PRG4 Silent p.F78F 0.27 TCGA-CA-6717-01 1 186274044 186274044 G A PRG4 Silent p.K196K 0.08 TCGA-CA-6717-01 1 186277569 186277569 G A PRG4 Silent p.A906A 0.09 TCGA-CA-6717-01 1 186278193 186278193 C A PRG4 Missense_Mutation p.F1114L 0.12 unknown(0) TCGA-CA-6717-01 1 186312586 186312586 C A TPR Nonsense_Mutation p.E1208* 0.12 TCGA-CA-6717-01 1 186327686 186327686 G T TPR Missense_Mutation p.L496I 0.18 benign(0.364) TCGA-CA-6717-01 1 186359899 186359899 T G C1orf27 Silent p.L177L 0.10 TCGA-CA-6717-01 1 186413055 186413055 C A PDC 3'UTR 0.14 TCGA-CA-6717-01 1 186415664 186415664 C T PDC Missense_Mutation p.S36N 0.23 tolerated(0.17) benign(0.003) TCGA-CA-6717-01 1 186643552 186643552 G T PTGS2 Missense_Mutation p.S583Y 0.19 deleterious(0) possibly_damaging(0.492) TCGA-CA-6717-01 1 186645996 186645996 C T PTGS2 Missense_Mutation p.R231H 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 186880397 186880397 G A PLA2G4A Missense_Mutation p.R145Q 0.18 deleterious(0.01) benign(0.256) TCGA-CA-6717-01 1 186946809 186946809 C T PLA2G4A Silent p.L617L 0.14 TCGA-CA-6717-01 1 186948521 186948521 T C PLA2G4A Missense_Mutation p.S679P 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 1 18807807 18807807 C T KLHDC7A Missense_Mutation p.T111I 0.11 tolerated(0.14) benign(0.047) TCGA-CA-6717-01 1 18812423 18812423 A G KLHDC7A 3'UTR 0.12 TCGA-CA-6717-01 1 19018313 19018313 C T PAX7 Nonsense_Mutation p.R218* 0.10 TCGA-CA-6717-01 1 190234101 190234101 G A BRINP3 Missense_Mutation p.S171L 0.29 tolerated_low_confidence(0.2) benign(0.015) TCGA-CA-6717-01 1 190423914 190423914 G A BRINP3 Missense_Mutation p.S36L 0.09 tolerated_low_confidence(0.44) benign(0.011) TCGA-CA-6717-01 1 192127748 192127748 C A RGS18 5'UTR 0.11 TCGA-CA-6717-01 1 192127881 192127881 A C RGS18 Missense_Mutation p.K38N 0.10 tolerated(0.13) possibly_damaging(0.632) TCGA-CA-6717-01 1 192548414 192548414 A C RGS1 Missense_Mutation p.N198H 0.08 deleterious(0.03) possibly_damaging(0.876) TCGA-CA-6717-01 1 192998523 192998523 G A UCHL5 Silent p.F143F 0.29 TCGA-CA-6717-01 1 193038551 193038551 A G TROVE2 Missense_Mutation p.T123A 0.08 tolerated(0.23) benign(0.178) TCGA-CA-6717-01 1 19420527 19420527 C T UBR4 Missense_Mutation p.R4618H 0.22 probably_damaging(0.991) TCGA-CA-6717-01 1 19479819 19479819 G A UBR4 Nonsense_Mutation p.R2270* 0.31 TCGA-CA-6717-01 1 19488359 19488359 A C UBR4 Silent p.T1663T 0.23 TCGA-CA-6717-01 1 19504099 19504099 C T UBR4 Silent p.S831S 0.21 TCGA-CA-6717-01 1 19571414 19571414 C T EMC1 Missense_Mutation p.R69Q 0.12 deleterious(0.01) probably_damaging(0.949) TCGA-CA-6717-01 1 19571464 19571464 C A EMC1 Missense_Mutation p.K52N 0.11 deleterious(0) probably_damaging(0.918) TCGA-CA-6717-01 1 196684891 196684891 T C CFH Missense_Mutation p.I563T 0.10 tolerated(1) benign(0.001) TCGA-CA-6717-01 1 196716254 196716254 A T CFH Silent p.I1169I 0.09 TCGA-CA-6717-01 1 196758729 196758729 T C CFHR3 Intron 0.08 TCGA-CA-6717-01 1 196762467 196762467 G T CFHR3 Nonsense_Mutation p.E273* 0.21 TCGA-CA-6717-01 1 196762530 196762530 A G CFHR3 Missense_Mutation p.T294A 0.18 tolerated(0.1) benign(0.011) TCGA-CA-6717-01 1 196762587 196762587 C A CFHR3 Missense_Mutation p.L313I 0.13 tolerated(0.12) possibly_damaging(0.899) TCGA-CA-6717-01 1 196876021 196876021 C A CFHR4 Missense_Mutation p.S156Y 0.09 deleterious(0.02) probably_damaging(0.929) TCGA-CA-6717-01 1 196883754 196883754 C A CFHR4 Missense_Mutation p.S436Y 0.09 deleterious(0) possibly_damaging(0.672) TCGA-CA-6717-01 1 196887526 196887526 G T CFHR4 Missense_Mutation p.R575I 0.08 tolerated(0.12) possibly_damaging(0.618) TCGA-CA-6717-01 1 196918708 196918708 C T CFHR2 Missense_Mutation p.S61F 0.15 deleterious(0) probably_damaging(0.972) TCGA-CA-6717-01 1 196964960 196964960 T G CFHR5 Missense_Mutation p.F241V 0.09 deleterious(0) probably_damaging(0.947) TCGA-CA-6717-01 1 196965281 196965281 A C CFHR5 Missense_Mutation p.N307T 0.12 tolerated(0.31) benign(0.043) TCGA-CA-6717-01 1 196967345 196967345 C A CFHR5 Missense_Mutation p.S353Y 0.12 deleterious(0.02) benign(0.013) TCGA-CA-6717-01 1 196977766 196977766 C T CFHR5 Nonsense_Mutation p.R555* 0.16 TCGA-CA-6717-01 1 197020000 197020000 C A F13B Missense_Mutation p.G522V 0.16 tolerated(0.08) possibly_damaging(0.824) TCGA-CA-6717-01 1 197036305 197036305 C A F13B Nonsense_Mutation p.E17* 0.23 TCGA-CA-6717-01 1 197072001 197072001 A G ASPM Missense_Mutation p.F2127S 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 197086975 197086975 T G ASPM Missense_Mutation p.M1337L 0.11 tolerated(0.34) benign(0.005) TCGA-CA-6717-01 1 197111558 197111558 C T ASPM Silent p.E608E 0.12 TCGA-CA-6717-01 1 197112133 197112133 T C ASPM Missense_Mutation p.N417D 0.10 tolerated(0.18) benign(0.079) TCGA-CA-6717-01 1 197150125 197150125 G A ZBTB41 Nonsense_Mutation p.R557* 0.16 TCGA-CA-6717-01 1 197168729 197168729 C A ZBTB41 Missense_Mutation p.R292I 0.18 tolerated(0.1) benign(0.091) TCGA-CA-6717-01 1 197168835 197168835 G A ZBTB41 Missense_Mutation p.R257W 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6717-01 1 197169038 197169038 T G ZBTB41 Missense_Mutation p.K189T 0.08 tolerated_low_confidence(0.39) benign(0) TCGA-CA-6717-01 1 197621376 197621376 T G DENND1B Missense_Mutation p.N146H 0.22 tolerated(0.62) benign(0.021) TCGA-CA-6717-01 1 197886590 197886590 A C LHX9 5'UTR 0.14 TCGA-CA-6717-01 1 198248186 198248186 C A NEK7 Missense_Mutation p.S195Y 0.27 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 198665947 198665947 C A PTPRC Missense_Mutation p.F69L 0.11 deleterious_low_confidence(0.05) benign(0.021) TCGA-CA-6717-01 1 198682168 198682168 C A PTPRC Missense_Mutation p.H420N 0.21 tolerated(0.14) benign(0.008) TCGA-CA-6717-01 1 198718663 198718663 T C PTPRC Silent p.N1019N 0.14 TCGA-CA-6717-01 1 198725166 198725166 T G PTPRC Silent p.A1259A 0.17 TCGA-CA-6717-01 1 200143098 200143098 A C NR5A2 Missense_Mutation p.K462N 0.13 deleterious(0.01) benign(0.085) TCGA-CA-6717-01 1 200587663 200587663 T C KIF14 Missense_Mutation p.I63M 0.19 deleterious(0.03) possibly_damaging(0.482) TCGA-CA-6717-01 1 20082258 20082258 C T TMCO4 Silent p.G128G 0.17 TCGA-CA-6717-01 1 200882729 200882729 A C C1orf106 Missense_Mutation p.E570A 0.18 deleterious(0) possibly_damaging(0.884) TCGA-CA-6717-01 1 201030456 201030456 A C CACNA1S Missense_Mutation p.I1065S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 1 201038626 201038626 T C CACNA1S Missense_Mutation p.I822V 0.10 tolerated(0.27) benign(0.217) TCGA-CA-6717-01 1 201060895 201060895 G T CACNA1S Silent p.I189I 0.10 TCGA-CA-6717-01 1 201165098 201165098 G A IGFN1 Missense_Mutation p.V87M 0.20 benign(0.21) TCGA-CA-6717-01 1 201356076 201356076 A C LAD1 Missense_Mutation p.L138R 0.08 tolerated(0.35) benign(0.319) TCGA-CA-6717-01 1 201687682 201687682 C T NAV1 Missense_Mutation p.T342M 0.21 tolerated(0.06) benign(0.436) TCGA-CA-6717-01 1 201759823 201759823 C T NAV1 Missense_Mutation p.R1084W 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 201868915 201868915 C T LMOD1 Missense_Mutation p.R409Q 0.23 benign(0.339) TCGA-CA-6717-01 1 202127292 202127292 A C PTPN7 Missense_Mutation p.L192R 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 202304774 202304774 G A UBE2T Nonsense_Mutation p.Q37* 0.23 TCGA-CA-6717-01 1 202400651 202400651 G T PPP1R12B Nonsense_Mutation p.E349* 0.12 TCGA-CA-6717-01 1 20246842 20246842 A G PLA2G2E Silent p.H129H 0.28 TCGA-CA-6717-01 1 202698951 202698951 G A KDM5B Missense_Mutation p.R1461C 0.09 deleterious(0) possibly_damaging(0.667) TCGA-CA-6717-01 1 202866003 202866003 A C KLHL12 Silent p.T306T 0.19 TCGA-CA-6717-01 1 203134863 203134863 T C ADORA1 Silent p.I272I 0.17 TCGA-CA-6717-01 1 203143676 203143676 C T MYBPH Silent p.Q130Q 0.27 TCGA-CA-6717-01 1 203151980 203151980 C A CHI3L1 Nonsense_Mutation p.E156* 0.18 TCGA-CA-6717-01 1 203453133 203453133 A G PRELP Missense_Mutation p.N274S 0.18 tolerated(0.41) probably_damaging(0.913) TCGA-CA-6717-01 1 203465272 203465272 C T OPTC Missense_Mutation p.R47W 0.16 deleterious(0) possibly_damaging(0.721) TCGA-CA-6717-01 1 204106242 204106242 T G ETNK2 Missense_Mutation p.K335T 0.24 deleterious(0) possibly_damaging(0.501) TCGA-CA-6717-01 1 204115879 204115879 C A ETNK2 Nonsense_Mutation p.E178* 0.17 TCGA-CA-6717-01 1 204128649 204128649 C A REN Missense_Mutation p.E189D 0.10 deleterious(0) benign(0.004) TCGA-CA-6717-01 1 204129789 204129789 C T REN Missense_Mutation p.D131N 0.13 tolerated(0.4) benign(0.041) TCGA-CA-6717-01 1 204590884 204590884 G T LRRN2 5'UTR 0.20 TCGA-CA-6717-01 1 204957801 204957801 C A NFASC Missense_Mutation p.F878L 0.13 deleterious(0.03) benign(0.028) TCGA-CA-6717-01 1 20501586 20501586 C T PLA2G2C Silent p.T31T 0.24 TCGA-CA-6717-01 1 205064031 205064031 C A RBBP5 Missense_Mutation p.V520L 0.12 tolerated_low_confidence(0.06) benign(0.003) TCGA-CA-6717-01 1 205130476 205130476 C A DSTYK Missense_Mutation p.D620Y 0.09 deleterious(0) probably_damaging(0.921) TCGA-CA-6717-01 1 205138593 205138593 C T DSTYK Missense_Mutation p.R341K 0.13 tolerated(0.57) benign(0.001) TCGA-CA-6717-01 1 205156745 205156745 C T DSTYK Missense_Mutation p.R152H 0.14 tolerated(0.18) possibly_damaging(0.715) TCGA-CA-6717-01 1 20519031 20519031 C T UBXN10 3'UTR 0.19 TCGA-CA-6717-01 1 205350734 205350734 C A LEMD1 3'UTR 0.10 TCGA-CA-6717-01 1 205549826 205549826 G A MFSD4 Missense_Mutation p.S156N 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 205688741 205688741 G A NUCKS1 Missense_Mutation p.S149L 0.20 deleterious(0) possibly_damaging(0.776) TCGA-CA-6717-01 1 205696912 205696912 G A NUCKS1 Missense_Mutation p.S30L 0.09 tolerated(0.15) benign(0.023) TCGA-CA-6717-01 1 205760606 205760606 A G SLC41A1 3'UTR 0.19 TCGA-CA-6717-01 1 205799501 205799501 G T PM20D1 Missense_Mutation p.S431Y 0.08 deleterious(0.01) benign(0.197) TCGA-CA-6717-01 1 205814462 205814462 G T PM20D1 Missense_Mutation p.N160K 0.14 deleterious(0.01) possibly_damaging(0.69) TCGA-CA-6717-01 1 205817066 205817066 G T PM20D1 Missense_Mutation p.S68Y 0.12 tolerated(0.57) benign(0.001) TCGA-CA-6717-01 1 206317547 206317547 G A CTSE 5'UTR 0.21 TCGA-CA-6717-01 1 206325318 206325318 T C CTSE Silent p.F181F 0.11 TCGA-CA-6717-01 1 206619564 206619564 T G SRGAP2 Missense_Mutation p.I587S 0.10 deleterious(0.03) possibly_damaging(0.525) TCGA-CA-6717-01 1 206765014 206765014 T C EIF2D 3'UTR 0.31 TCGA-CA-6717-01 1 206769090 206769090 C T EIF2D Missense_Mutation p.A496T 0.11 deleterious(0.01) possibly_damaging(0.864) TCGA-CA-6717-01 1 206820818 206820818 T C DYRK3 Missense_Mutation p.F92S 0.26 tolerated_low_confidence(0.46) benign(0.261) TCGA-CA-6717-01 1 206821244 206821244 A G DYRK3 Missense_Mutation p.Y234C 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-CA-6717-01 1 206905587 206905587 C T MAPKAPK2 Intron 0.19 TCGA-CA-6717-01 1 207131755 207131755 C A FCAMR 3'UTR 0.25 TCGA-CA-6717-01 1 207641979 207641979 T C CR2 Missense_Mutation p.S185P 0.08 tolerated(1) benign(0.001) TCGA-CA-6717-01 1 207785079 207785079 A G CR1 Missense_Mutation p.N2118S 0.11 tolerated(0.81) benign(0.029) TCGA-CA-6717-01 1 207867973 207867973 T G CR1L Missense_Mutation p.L247V 0.09 tolerated(0.12) benign(0.181) TCGA-CA-6717-01 1 208062132 208062132 C A CD34 Missense_Mutation p.K289N 0.09 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 208062880 208062880 T G CD34 Silent p.V228V 0.19 TCGA-CA-6717-01 1 20828577 20828577 C T MUL1 Missense_Mutation p.R105Q 0.20 tolerated(0.13) probably_damaging(1) TCGA-CA-6717-01 1 209786136 209786136 C A CAMK1G Missense_Mutation p.F449L 0.24 tolerated_low_confidence(0.06) benign(0.045) TCGA-CA-6717-01 1 209789961 209789961 C T LAMB3 Silent p.E1079E 0.26 TCGA-CA-6717-01 1 209807967 209807967 C T LAMB3 Missense_Mutation p.G130D 0.14 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 209948739 209948739 G A TRAF3IP3 Missense_Mutation p.D274N 0.16 deleterious(0) possibly_damaging(0.57) TCGA-CA-6717-01 1 209948748 209948748 A C TRAF3IP3 Missense_Mutation p.N277H 0.15 deleterious(0.02) benign(0.028) TCGA-CA-6717-01 1 209956200 209956200 C T C1orf74 Silent p.E260E 0.15 TCGA-CA-6717-01 1 209956501 209956501 C T C1orf74 Missense_Mutation p.S160N 0.27 deleterious(0) possibly_damaging(0.856) TCGA-CA-6717-01 1 210273509 210273509 A C SYT14 Silent p.T334T 0.17 TCGA-CA-6717-01 1 210273672 210273672 C T SYT14 Missense_Mutation p.R389W 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 21031193 21031193 C T KIF17 Silent p.S290S 0.22 TCGA-CA-6717-01 1 210407099 210407099 A C SERTAD4 Intron 0.15 TCGA-CA-6717-01 1 210411455 210411455 C T SERTAD4 Silent p.D50D 0.22 TCGA-CA-6717-01 1 21054023 21054023 G A SH2D5 Missense_Mutation p.A54V 0.23 tolerated(0.06) benign(0.237) TCGA-CA-6717-01 1 210591588 210591588 G A HHAT Missense_Mutation p.E260K 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 210797013 210797013 A C HHAT Missense_Mutation p.Q464H 0.10 deleterious(0.04) benign(0.044) TCGA-CA-6717-01 1 210971069 210971069 C A KCNH1 Missense_Mutation p.D566Y 0.20 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 1 21102376 21102376 C T HP1BP3 Intron 0.12 TCGA-CA-6717-01 1 21137375 21137375 C T EIF4G3 Missense_Mutation p.D1484N 0.19 deleterious(0.01) possibly_damaging(0.895) TCGA-CA-6717-01 1 21139699 21139699 T C EIF4G3 Missense_Mutation p.T1467A 0.09 tolerated(0.22) benign(0) TCGA-CA-6717-01 1 211836669 211836669 C T NEK2 3'UTR 0.25 TCGA-CA-6717-01 1 212148577 212148577 A G INTS7 Silent p.N582N 0.09 TCGA-CA-6717-01 1 21220089 21220089 C T EIF4G3 Missense_Mutation p.R675Q 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6717-01 1 212218053 212218053 G A DTL Missense_Mutation p.R77Q 0.12 tolerated(0.06) benign(0.068) TCGA-CA-6717-01 1 212274108 212274108 T G DTL Silent p.A592A 0.13 TCGA-CA-6717-01 1 212558692 212558692 C T TMEM206 Missense_Mutation p.S201N 0.11 tolerated(0.68) benign(0.013) TCGA-CA-6717-01 1 212583834 212583834 C A TMEM206 Missense_Mutation p.E83D 0.23 tolerated_low_confidence(0.08) benign(0.036) TCGA-CA-6717-01 1 212911667 212911667 G T NSL1 3'UTR 0.12 TCGA-CA-6717-01 1 212957791 212957791 C A NSL1 Missense_Mutation p.V120L 0.09 deleterious(0) possibly_damaging(0.819) TCGA-CA-6717-01 1 212970465 212970465 T C TATDN3 Missense_Mutation p.F62S 0.09 deleterious(0.03) benign(0.397) TCGA-CA-6717-01 1 213146100 213146100 A T VASH2 Missense_Mutation p.S182C 0.12 deleterious(0.04) probably_damaging(0.922) TCGA-CA-6717-01 1 213414879 213414879 G A RPS6KC1 Missense_Mutation p.G687E 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 214170779 214170779 G A PROX1 Missense_Mutation p.E301K 0.12 tolerated(0.21) benign(0.342) TCGA-CA-6717-01 1 214557099 214557099 T C PTPN14 Missense_Mutation p.D700G 0.17 tolerated(0.16) benign(0.031) TCGA-CA-6717-01 1 214588070 214588070 C A PTPN14 Splice_Site p.X115_splice 0.21 TCGA-CA-6717-01 1 214788361 214788361 G A CENPF Missense_Mutation p.E117K 0.17 possibly_damaging(0.766) TCGA-CA-6717-01 1 214814015 214814015 A C CENPF Missense_Mutation p.E778D 0.12 benign(0.073) TCGA-CA-6717-01 1 214818792 214818792 G T CENPF Missense_Mutation p.R1960I 0.19 possibly_damaging(0.885) TCGA-CA-6717-01 1 215342574 215342574 G A KCNK2 Missense_Mutation p.G170S 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 215345499 215345499 A G KCNK2 Missense_Mutation p.T266A 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 215777559 215777559 G A KCTD3 Silent p.G408G 0.23 TCGA-CA-6717-01 1 215848555 215848555 C A USH2A Missense_Mutation p.W4233L 0.14 probably_damaging(0.953) TCGA-CA-6717-01 1 215848679 215848679 G A USH2A Missense_Mutation p.R4192C 0.25 probably_damaging(0.977) TCGA-CA-6717-01 1 216019230 216019230 G T USH2A Silent p.I2997I 0.08 TCGA-CA-6717-01 1 216138701 216138701 T C USH2A Missense_Mutation p.T2360A 0.09 benign(0.103) TCGA-CA-6717-01 1 216173788 216173788 A C USH2A Missense_Mutation p.S2148A 0.21 benign(0) TCGA-CA-6717-01 1 216348489 216348489 T G USH2A Intron 0.27 TCGA-CA-6717-01 1 216373021 216373021 T G USH2A Missense_Mutation p.K1253N 0.14 benign(0.005) TCGA-CA-6717-01 1 216595538 216595538 C A USH2A Missense_Mutation p.K47N 0.19 probably_damaging(0.963) TCGA-CA-6717-01 1 21771686 21771686 G A NBPF3 Missense_Mutation p.R36Q 0.21 tolerated_low_confidence(0.27) benign(0.238) TCGA-CA-6717-01 1 217975087 217975087 A C SPATA17 Missense_Mutation p.K300N 0.12 deleterious(0) benign(0.21) TCGA-CA-6717-01 1 218504325 218504325 G A RRP15 Silent p.T247T 0.21 TCGA-CA-6717-01 1 218610818 218610818 T G TGFB2 Missense_Mutation p.S384A 0.13 tolerated(1) benign(0.006) TCGA-CA-6717-01 1 220157570 220157570 T G EPRS Missense_Mutation p.N1023T 0.09 deleterious(0.01) benign(0.381) TCGA-CA-6717-01 1 220170392 220170392 G T EPRS Missense_Mutation p.S825Y 0.33 deleterious(0.01) benign(0.168) TCGA-CA-6717-01 1 220247379 220247379 C T BPNT1 Missense_Mutation p.R52Q 0.12 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 1 22033020 22033020 C A USP48 Missense_Mutation p.K717N 0.11 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 1 220340902 220340902 A G RAB3GAP2 Silent p.G974G 0.17 TCGA-CA-6717-01 1 220356133 220356133 G T RAB3GAP2 Missense_Mutation p.F713L 0.12 deleterious(0) probably_damaging(0.954) TCGA-CA-6717-01 1 220440100 220440100 A C RAB3GAP2 Intron 0.16 TCGA-CA-6717-01 1 220445565 220445565 T G RAB3GAP2 Missense_Mutation p.S39R 0.19 tolerated_low_confidence(0.37) benign(0.249) TCGA-CA-6717-01 1 22063040 22063040 T C USP48 Missense_Mutation p.H357R 0.10 deleterious(0) possibly_damaging(0.643) TCGA-CA-6717-01 1 220805569 220805569 C T MARK1 Nonsense_Mutation p.R346* 0.12 TCGA-CA-6717-01 1 220835221 220835221 C T MARK1 Missense_Mutation p.R701W 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 220964909 220964909 A C MARC1 Missense_Mutation p.T118P 0.10 deleterious(0.03) benign(0.126) TCGA-CA-6717-01 1 22148665 22148665 C A LDLRAD2 Intron 0.11 TCGA-CA-6717-01 1 222801923 222801923 A C MIA3 Missense_Mutation p.N454T 0.11 deleterious(0.02) benign(0.122) TCGA-CA-6717-01 1 222838683 222838683 G T MIA3 Nonsense_Mutation p.E1816* 0.21 TCGA-CA-6717-01 1 222843257 222843257 T C AIDA Missense_Mutation p.H300R 0.06 tolerated(0.21) benign(0.05) TCGA-CA-6717-01 1 222892350 222892350 A C BROX Missense_Mutation p.D62A 0.13 tolerated(0.32) benign(0.321) TCGA-CA-6717-01 1 22307592 22307592 G A CELA3B Missense_Mutation p.E97K 0.14 tolerated(0.06) probably_damaging(0.99) TCGA-CA-6717-01 1 223285053 223285053 G T TLR5 Missense_Mutation p.L441I 0.12 deleterious(0.02) benign(0.172) TCGA-CA-6717-01 1 223285155 223285155 C T TLR5 Missense_Mutation p.D407N 0.10 tolerated(0.71) benign(0) TCGA-CA-6717-01 1 223402693 223402693 G A SUSD4 Silent p.F254F 0.10 TCGA-CA-6717-01 1 223568321 223568321 C T C1orf65 Missense_Mutation p.R502C 0.13 deleterious(0.01) possibly_damaging(0.528) TCGA-CA-6717-01 1 223947122 223947122 G A CAPN2 Missense_Mutation p.E490K 0.16 deleterious(0.03) probably_damaging(0.921) TCGA-CA-6717-01 1 224424223 224424223 C T NVL Missense_Mutation p.R784H 0.13 deleterious(0.04) benign(0.017) TCGA-CA-6717-01 1 224566658 224566658 T G CNIH4 3'UTR 0.31 TCGA-CA-6717-01 1 224804913 224804913 T C CNIH3 Missense_Mutation p.S13P 0.10 deleterious(0) benign(0.291) TCGA-CA-6717-01 1 225142735 225142735 A C DNAH14 Missense_Mutation p.K51T 0.10 tolerated(0.12) benign(0.04) TCGA-CA-6717-01 1 225155233 225155233 C T DNAH14 Missense_Mutation p.T200I 0.12 tolerated(0.13) possibly_damaging(0.672) TCGA-CA-6717-01 1 225230753 225230753 G T DNAH14 Nonsense_Mutation p.E588* 0.10 TCGA-CA-6717-01 1 225267009 225267009 C A DNAH14 Missense_Mutation p.S776Y 0.20 tolerated(0.06) benign(0) TCGA-CA-6717-01 1 225328516 225328516 C A DNAH14 Missense_Mutation p.S512Y 0.17 tolerated(0.08) benign(0.052) TCGA-CA-6717-01 1 225428426 225428426 T C DNAH14 Missense_Mutation p.I1790T 0.13 tolerated(0.34) benign(0) TCGA-CA-6717-01 1 225453024 225453024 T G DNAH14 Missense_Mutation p.L1909V 0.21 deleterious(0.01) benign(0.064) TCGA-CA-6717-01 1 225460750 225460750 C A DNAH14 Missense_Mutation p.H2639N 0.18 possibly_damaging(0.835) TCGA-CA-6717-01 1 225477629 225477629 G A DNAH14 Missense_Mutation p.A2026T 0.10 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 1 225521175 225521175 C A DNAH14 Missense_Mutation p.F3256L 0.15 possibly_damaging(0.861) TCGA-CA-6717-01 1 225548458 225548458 C A DNAH14 Missense_Mutation p.S3858Y 0.12 probably_damaging(0.999) TCGA-CA-6717-01 1 225552562 225552562 C A DNAH14 Missense_Mutation p.S3926Y 0.16 possibly_damaging(0.742) TCGA-CA-6717-01 1 225569247 225569247 C A DNAH14 Missense_Mutation p.S3238Y 0.13 deleterious(0) possibly_damaging(0.86) TCGA-CA-6717-01 1 225605748 225605748 A G LBR Missense_Mutation p.F259L 0.16 tolerated(0.47) benign(0.009) TCGA-CA-6717-01 1 225742664 225742664 T G ENAH Missense_Mutation p.N98T 0.35 tolerated(1) unknown(0) TCGA-CA-6717-01 1 226016459 226016459 T G EPHX1 Missense_Mutation p.V10G 0.18 tolerated(0.06) benign(0.011) TCGA-CA-6717-01 1 226550854 226550854 G A PARP1 Silent p.L932L 0.11 TCGA-CA-6717-01 1 227216567 227216567 T C CDC42BPA Missense_Mutation p.N1373S 0.13 tolerated(0.17) benign(0) TCGA-CA-6717-01 1 227268615 227268615 T C CDC42BPA Missense_Mutation p.Q820R 0.11 deleterious(0.01) possibly_damaging(0.767) TCGA-CA-6717-01 1 227327333 227327333 T A CDC42BPA Missense_Mutation p.E445V 0.13 deleterious(0.02) probably_damaging(0.981) TCGA-CA-6717-01 1 227842385 227842385 G T ZNF678 Missense_Mutation p.R145I 0.23 tolerated(0.16) benign(0.006) TCGA-CA-6717-01 1 227843321 227843321 A C ZNF678 Missense_Mutation p.E457A 0.25 deleterious(0.03) benign(0.032) TCGA-CA-6717-01 1 22818023 22818023 G A ZBTB40 Silent p.K276K 0.10 TCGA-CA-6717-01 1 228246812 228246812 C T WNT3A Silent p.Y235Y 0.13 TCGA-CA-6717-01 1 228289151 228289151 T C C1orf35 Missense_Mutation p.K186R 0.15 tolerated(0.54) benign(0.004) TCGA-CA-6717-01 1 228431049 228431049 C T OBSCN Missense_Mutation p.A1124V 0.08 benign(0.063) TCGA-CA-6717-01 1 228494605 228494605 C T OBSCN Missense_Mutation p.A4934V 0.14 benign(0.082) TCGA-CA-6717-01 1 228496913 228496913 T G OBSCN Missense_Mutation p.L5242V 0.08 probably_damaging(0.999) TCGA-CA-6717-01 1 228554724 228554724 C A OBSCN Silent p.I7449I 0.11 TCGA-CA-6717-01 1 228879528 228879528 C A RHOU 3'UTR 0.28 TCGA-CA-6717-01 1 229567590 229567590 C T ACTA1 Missense_Mutation p.D290N 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-CA-6717-01 1 229567823 229567823 G A ACTA1 Silent p.Y242Y 0.11 TCGA-CA-6717-01 1 229586337 229586337 C A NUP133 Nonsense_Mutation p.E1039* 0.10 TCGA-CA-6717-01 1 229631689 229631689 T A NUP133 Missense_Mutation p.S309C 0.08 deleterious(0) possibly_damaging(0.722) TCGA-CA-6717-01 1 229662993 229662993 T A ABCB10 Missense_Mutation p.I570F 0.11 deleterious(0.03) benign(0.248) TCGA-CA-6717-01 1 229771721 229771721 G A URB2 Missense_Mutation p.R454H 0.24 tolerated(0.63) benign(0) TCGA-CA-6717-01 1 22987799 22987799 G A C1QB Missense_Mutation p.D228N 0.12 deleterious(0.01) benign(0.022) TCGA-CA-6717-01 1 230401003 230401003 G A GALNT2 Missense_Mutation p.D444N 0.21 tolerated(0.34) benign(0.003) TCGA-CA-6717-01 1 231047258 231047258 A G TTC13 Missense_Mutation p.V756A 0.10 tolerated(0.29) benign(0.02) TCGA-CA-6717-01 1 231094022 231094022 T C TTC13 Silent p.E130E 0.09 TCGA-CA-6717-01 1 231386845 231386845 T G GNPAT Missense_Mutation p.C73G 0.14 tolerated(0.37) benign(0) TCGA-CA-6717-01 1 232172679 232172679 G A DISC1 3'UTR 0.11 TCGA-CA-6717-01 1 23232595 23232595 C T EPHB2 Silent p.I628I 0.20 TCGA-CA-6717-01 1 232534850 232534850 T C SIPA1L2 3'UTR 0.21 TCGA-CA-6717-01 1 232581367 232581367 G A SIPA1L2 Silent p.P1087P 0.18 TCGA-CA-6717-01 1 232607243 232607243 A C SIPA1L2 Missense_Mutation p.I706S 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 232619600 232619600 A C SIPA1L2 Missense_Mutation p.L640R 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 232941695 232941695 G A MAP10 Missense_Mutation p.R309Q 0.23 tolerated(0.37) benign(0.003) TCGA-CA-6717-01 1 232942491 232942491 G T MAP10 Missense_Mutation p.K574N 0.19 tolerated(0.14) benign(0.091) TCGA-CA-6717-01 1 232943684 232943684 C A MAP10 Missense_Mutation p.S972Y 0.20 deleterious(0) possibly_damaging(0.56) TCGA-CA-6717-01 1 232945335 232945335 A G MAP10 3'UTR 0.10 TCGA-CA-6717-01 1 232946063 232946063 T G MAP10 3'UTR 0.18 TCGA-CA-6717-01 1 233091419 233091419 G A NTPCR Missense_Mutation p.D51N 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 233397891 233397891 T G PCNXL2 Missense_Mutation p.N127T 0.10 tolerated(0.27) benign(0.034) TCGA-CA-6717-01 1 233482229 233482229 A C MLK4 Missense_Mutation p.K283Q 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 233490690 233490690 A G MLK4 Missense_Mutation p.H415R 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 1 23408841 23408841 G A KDM1A Silent p.S809S 0.13 TCGA-CA-6717-01 1 23417879 23417879 T C LUZP1 Missense_Mutation p.D959G 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 23420192 23420192 G T LUZP1 Nonsense_Mutation p.S188* 0.18 TCGA-CA-6717-01 1 234367287 234367287 C A SLC35F3 Missense_Mutation p.F136L 0.14 tolerated(1) benign(0.001) TCGA-CA-6717-01 1 234565017 234565017 T G TARBP1 Missense_Mutation p.K975N 0.22 deleterious(0.02) benign(0.132) TCGA-CA-6717-01 1 234596031 234596031 C T TARBP1 Missense_Mutation p.G504D 0.23 tolerated(0.07) benign(0.132) TCGA-CA-6717-01 1 234599627 234599627 T C TARBP1 Missense_Mutation p.K452R 0.12 tolerated(0.4) benign(0.008) TCGA-CA-6717-01 1 234603357 234603357 T C TARBP1 Missense_Mutation p.Y380C 0.13 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 235294925 235294925 G T RBM34 3'UTR 0.20 TCGA-CA-6717-01 1 235295030 235295030 A C RBM34 Nonstop_Mutation p.*431Eext*14 0.11 TCGA-CA-6717-01 1 235938294 235938294 T - LYST Frame_Shift_Del p.E1851Dfs*2 0.14 TCGA-CA-6717-01 1 235955345 235955345 T C LYST Silent p.L1399L 0.19 TCGA-CA-6717-01 1 235969998 235969998 C T LYST Missense_Mutation p.R813Q 0.22 deleterious(0) possibly_damaging(0.895) TCGA-CA-6717-01 1 235970023 235970023 C T LYST Missense_Mutation p.E805K 0.11 deleterious(0.01) possibly_damaging(0.664) TCGA-CA-6717-01 1 235971882 235971882 C T LYST Missense_Mutation p.A746T 0.17 tolerated(0.22) benign(0.299) TCGA-CA-6717-01 1 235972351 235972351 T G LYST Missense_Mutation p.K589N 0.25 tolerated(0.05) benign(0.403) TCGA-CA-6717-01 1 235973788 235973788 C A LYST Missense_Mutation p.K110N 0.08 tolerated_low_confidence(0.25) possibly_damaging(0.908) TCGA-CA-6717-01 1 235976360 235976360 G C LYST Missense_Mutation p.A65G 0.17 tolerated_low_confidence(0.39) benign(0.001) TCGA-CA-6717-01 1 236157147 236157147 G A NID1 Silent p.H851H 0.21 TCGA-CA-6717-01 1 236195836 236195836 G A NID1 Missense_Mutation p.R468C 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 236208763 236208763 A G NID1 Missense_Mutation p.L249S 0.12 deleterious(0.01) possibly_damaging(0.764) TCGA-CA-6717-01 1 236381720 236381720 C A ERO1LB 3'UTR 0.13 TCGA-CA-6717-01 1 236719199 236719199 A G HEATR1 Missense_Mutation p.I1852T 0.12 deleterious(0) possibly_damaging(0.703) TCGA-CA-6717-01 1 236722423 236722423 G A HEATR1 Silent p.L1595L 0.20 TCGA-CA-6717-01 1 236737550 236737550 G T HEATR1 Missense_Mutation p.N1137K 0.11 deleterious(0.04) benign(0.186) TCGA-CA-6717-01 1 236746393 236746393 G A HEATR1 Missense_Mutation p.A782V 0.21 tolerated(0.37) benign(0.003) TCGA-CA-6717-01 1 236757389 236757389 A G HEATR1 Silent p.G372G 0.08 TCGA-CA-6717-01 1 23689318 23689318 C A ZNF436 Missense_Mutation p.R186I 0.13 deleterious(0) probably_damaging(0.955) TCGA-CA-6717-01 1 237604646 237604646 G T RYR2 Nonsense_Mutation p.E345* 0.10 TCGA-CA-6717-01 1 237753190 237753190 A G RYR2 Silent p.L1232L 0.22 TCGA-CA-6717-01 1 237754007 237754007 C A RYR2 Missense_Mutation p.S1292Y 0.29 benign(0.417) TCGA-CA-6717-01 1 237774206 237774206 C T RYR2 Nonsense_Mutation p.R1610* 0.20 TCGA-CA-6717-01 1 237777867 237777867 T C RYR2 Silent p.T1813T 0.10 TCGA-CA-6717-01 1 237780733 237780733 G T RYR2 Missense_Mutation p.A1955S 0.15 probably_damaging(0.912) TCGA-CA-6717-01 1 237829867 237829867 T C RYR2 Missense_Mutation p.V2831A 0.14 probably_damaging(0.959) TCGA-CA-6717-01 1 237863758 237863758 G A RYR2 Missense_Mutation p.D3120N 0.16 probably_damaging(0.994) TCGA-CA-6717-01 1 237889591 237889591 C T RYR2 Missense_Mutation p.R3570W 0.14 benign(0) TCGA-CA-6717-01 1 237947447 237947447 C T RYR2 Silent p.I4145I 0.10 TCGA-CA-6717-01 1 237947553 237947553 G A RYR2 Missense_Mutation p.G4181R 0.24 probably_damaging(0.98) TCGA-CA-6717-01 1 237947632 237947632 C T RYR2 Missense_Mutation p.S4207L 0.11 probably_damaging(0.986) TCGA-CA-6717-01 1 237947851 237947851 T C RYR2 Missense_Mutation p.V4280A 0.10 benign(0.043) TCGA-CA-6717-01 1 237957188 237957188 C T RYR2 Nonsense_Mutation p.R4602* 0.17 TCGA-CA-6717-01 1 237958618 237958618 T G RYR2 Missense_Mutation p.F4648C 0.09 possibly_damaging(0.869) TCGA-CA-6717-01 1 237961382 237961382 G T RYR2 Nonsense_Mutation p.E4668* 0.14 TCGA-CA-6717-01 1 240071715 240071715 C T CHRM3 Missense_Mutation p.P322S 0.12 tolerated(0.55) benign(0.004) TCGA-CA-6717-01 1 240072694 240072694 A C CHRM3 3'UTR 0.26 TCGA-CA-6717-01 1 240370335 240370335 G A FMN2 Silent p.A741A 0.10 TCGA-CA-6717-01 1 240372011 240372011 G T FMN2 Missense_Mutation p.R1300M 0.22 probably_damaging(0.999) TCGA-CA-6717-01 1 240635641 240635641 T C FMN2 Intron 0.10 TCGA-CA-6717-01 1 24077981 24077981 A G TCEB3 Missense_Mutation p.S322G 0.10 tolerated(0.28) benign(0.001) TCGA-CA-6717-01 1 241725561 241725561 C T KMO Missense_Mutation p.R182C 0.26 deleterious(0.04) benign(0.192) TCGA-CA-6717-01 1 241823866 241823866 A G WDR64 Silent p.V60V 0.21 TCGA-CA-6717-01 1 241834444 241834444 C T WDR64 Silent p.F115F 0.25 TCGA-CA-6717-01 1 241842873 241842873 T G WDR64 Missense_Mutation p.D190E 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 241846791 241846791 A C WDR64 Missense_Mutation p.E199D 0.16 tolerated(0.52) benign(0.02) TCGA-CA-6717-01 1 241951227 241951227 G T WDR64 Missense_Mutation p.D918Y 0.10 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 1 242035389 242035389 G T EXO1 Missense_Mutation p.K441N 0.10 deleterious(0) probably_damaging(0.937) TCGA-CA-6717-01 1 2422731 2422731 T C PLCH2 Missense_Mutation p.F512S 0.10 deleterious(0.01) possibly_damaging(0.559) TCGA-CA-6717-01 1 242383413 242383413 G A PLD5 Silent p.A204A 0.09 TCGA-CA-6717-01 1 243299473 243299473 A G CEP170 Missense_Mutation p.S1431P 0.07 deleterious(0) possibly_damaging(0.809) TCGA-CA-6717-01 1 243716138 243716138 C A AKT3 Missense_Mutation p.E352D 0.13 tolerated(0.32) possibly_damaging(0.464) TCGA-CA-6717-01 1 244219153 244219153 C T ZBTB18 3'UTR 0.09 TCGA-CA-6717-01 1 244220264 244220264 C T ZBTB18 3'UTR 0.12 TCGA-CA-6717-01 1 244528024 244528024 G T C1orf100 Nonsense_Mutation p.E8* 0.19 TCGA-CA-6717-01 1 244541836 244541836 A G C1orf100 Missense_Mutation p.T74A 0.11 tolerated(0.38) probably_damaging(0.998) TCGA-CA-6717-01 1 244552349 244552349 G T C1orf100 Missense_Mutation p.R141I 0.20 deleterious(0.04) benign(0.023) TCGA-CA-6717-01 1 244641218 244641218 A G C1orf101 Missense_Mutation p.T67A 0.23 tolerated(0.09) possibly_damaging(0.895) TCGA-CA-6717-01 1 244643080 244643080 G T C1orf101 Missense_Mutation p.R107I 0.10 deleterious(0.01) benign(0.156) TCGA-CA-6717-01 1 244681986 244681986 G T C1orf101 Missense_Mutation p.E174D 0.24 tolerated(0.61) benign(0.005) TCGA-CA-6717-01 1 244735764 244735764 C T C1orf101 Missense_Mutation p.S547F 0.13 tolerated(0.11) benign(0.26) TCGA-CA-6717-01 1 244735818 244735818 A G C1orf101 Missense_Mutation p.D565G 0.18 tolerated(0.1) benign(0.009) TCGA-CA-6717-01 1 245008550 245008550 C A COX20 3'Flank 0.11 TCGA-CA-6717-01 1 245021496 245021496 T G HNRNPU Missense_Mutation p.E437D 0.12 tolerated(0.36) unknown(0) TCGA-CA-6717-01 1 2452559 2452559 C T PANK4 Missense_Mutation p.E135K 0.12 tolerated(1) benign(0.069) TCGA-CA-6717-01 1 245674432 245674432 T C KIF26B Intron 0.13 TCGA-CA-6717-01 1 246795206 246795206 C T CNST Missense_Mutation p.S199F 0.23 deleterious(0) probably_damaging(0.957) TCGA-CA-6717-01 1 246829080 246829080 C T CNST Missense_Mutation p.A684V 0.18 deleterious(0.01) possibly_damaging(0.586) TCGA-CA-6717-01 1 247013369 247013369 A C AHCTF1 Missense_Mutation p.I1989S 0.07 tolerated(0.44) benign(0.234) TCGA-CA-6717-01 1 247013413 247013413 A C AHCTF1 Missense_Mutation p.F1974L 0.23 tolerated(0.55) benign(0.002) TCGA-CA-6717-01 1 247014340 247014340 A C AHCTF1 Silent p.T1665T 0.23 TCGA-CA-6717-01 1 247014452 247014452 T C AHCTF1 Missense_Mutation p.N1628S 0.09 tolerated(0.3) benign(0.014) TCGA-CA-6717-01 1 247040541 247040541 T C AHCTF1 Silent p.L917L 0.22 TCGA-CA-6717-01 1 24706252 24706252 G A STPG1 Missense_Mutation p.S118L 0.12 tolerated(0.05) benign(0.152) TCGA-CA-6717-01 1 247076569 247076569 T C AHCTF1 Missense_Mutation p.D183G 0.15 deleterious(0.05) probably_damaging(0.974) TCGA-CA-6717-01 1 247202765 247202765 C A ZNF670 Missense_Mutation p.K26N 0.17 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 247263842 247263842 C A ZNF669 Missense_Mutation p.R410I 0.15 deleterious(0.04) benign(0.013) TCGA-CA-6717-01 1 247264312 247264312 C T ZNF669 Silent p.T253T 0.19 TCGA-CA-6717-01 1 247275430 247275430 A C C1orf229 Missense_Mutation p.L33V 0.15 tolerated_low_confidence(0.46) possibly_damaging(0.567) TCGA-CA-6717-01 1 247320209 247320209 A G ZNF124 Missense_Mutation p.C177R 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 247582165 247582165 G T NLRP3 Missense_Mutation p.K23N 0.32 deleterious(0) possibly_damaging(0.896) TCGA-CA-6717-01 1 247588701 247588701 G A NLRP3 Silent p.K652K 0.16 TCGA-CA-6717-01 1 247615090 247615090 G T OR2B11 Silent p.I65I 0.22 TCGA-CA-6717-01 1 247752579 247752579 A T OR2G2 Missense_Mutation p.K306N 0.17 deleterious(0.01) unknown(0) TCGA-CA-6717-01 1 247769655 247769655 C A OR2G3 Silent p.I256I 0.23 TCGA-CA-6717-01 1 247921043 247921043 G T OR1C1 Missense_Mutation p.F222L 0.13 tolerated(0.38) benign(0.088) TCGA-CA-6717-01 1 247921294 247921294 A G OR1C1 Missense_Mutation p.C139R 0.20 tolerated(0.63) benign(0) TCGA-CA-6717-01 1 247921382 247921382 A G OR1C1 Silent p.N109N 0.23 TCGA-CA-6717-01 1 247978760 247978760 G T OR14A16 Nonsense_Mutation p.S91* 0.09 TCGA-CA-6717-01 1 248112873 248112873 G T OR2L8 Missense_Mutation p.L238F 0.19 deleterious(0.02) benign(0.017) TCGA-CA-6717-01 1 248262848 248262848 G A OR2L13 Silent p.P57P 0.11 TCGA-CA-6717-01 1 248263485 248263485 G T OR2L13 Missense_Mutation p.D270Y 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 1 248366645 248366645 T G OR2M3 Missense_Mutation p.I92M 0.11 deleterious(0.01) possibly_damaging(0.801) TCGA-CA-6717-01 1 248436197 248436197 A G OR2T33 Missense_Mutation p.V307A 0.09 tolerated(1) benign(0.001) TCGA-CA-6717-01 1 248436541 248436541 G A OR2T33 Silent p.V192V 0.06 TCGA-CA-6717-01 1 248437118 248437118 A C OR2T33 5'UTR 0.11 TCGA-CA-6717-01 1 248458289 248458289 A G OR2T12 Missense_Mutation p.Y198H 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 248458495 248458495 C T OR2T12 Missense_Mutation p.R129Q 0.20 tolerated(0.11) benign(0.271) TCGA-CA-6717-01 1 248487282 248487282 C A OR2M7 Nonsense_Mutation p.E197* 0.08 TCGA-CA-6717-01 1 248525254 248525254 C A OR2T4 Silent p.I124I 0.07 TCGA-CA-6717-01 1 248551187 248551187 C A OR2T6 Missense_Mutation p.S93Y 0.12 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 1 248616305 248616305 C A OR2T2 Silent p.I69I 0.12 TCGA-CA-6717-01 1 248756354 248756354 G C OR2T10 Missense_Mutation p.T239S 0.21 tolerated(0.06) benign(0.043) TCGA-CA-6717-01 1 249213120 249213120 G T PGBD2 3'Flank 0.12 TCGA-CA-6717-01 1 25167303 25167303 G T CLIC4 Nonsense_Mutation p.E213* 0.13 TCGA-CA-6717-01 1 25291055 25291055 G A RUNX3 Missense_Mutation p.S3L 0.12 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-CA-6717-01 1 2530101 2530101 G T MMEL1 Nonsense_Mutation p.Y390* 0.28 TCGA-CA-6717-01 1 25553991 25553991 G A SYF2 Missense_Mutation p.R137W 0.13 deleterious(0) possibly_damaging(0.763) TCGA-CA-6717-01 1 25554697 25554697 C A SYF2 Missense_Mutation p.E96D 0.08 tolerated(0.64) benign(0.009) TCGA-CA-6717-01 1 25783240 25783240 C T TMEM57 Silent p.N190N 0.18 TCGA-CA-6717-01 1 25785119 25785119 G A TMEM57 Missense_Mutation p.R297K 0.09 tolerated(0.36) probably_damaging(0.987) TCGA-CA-6717-01 1 26138248 26138248 G A SEPN1 Missense_Mutation p.D387N 0.12 tolerated(0.11) benign(0.004) TCGA-CA-6717-01 1 26288495 26288495 A G PAFAH2 Silent p.H388H 0.15 TCGA-CA-6717-01 1 26359777 26359777 G A EXTL1 Missense_Mutation p.D497N 0.36 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 1 26448762 26448762 C A PDIK1L Silent p.I240I 0.15 TCGA-CA-6717-01 1 26488249 26488249 C T FAM110D Missense_Mutation p.S156L 0.18 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 1 26488970 26488970 G T FAM110D 3'UTR 0.09 TCGA-CA-6717-01 1 26516097 26516097 T C CNKSR1 3'UTR 0.15 TCGA-CA-6717-01 1 26586280 26586280 A C CEP85 Missense_Mutation p.K443T 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 26691664 26691664 C G ZNF683 Missense_Mutation p.V125L 0.10 tolerated(0.06) benign(0.001) TCGA-CA-6717-01 1 26694104 26694104 T C ZNF683 Missense_Mutation p.Q100R 0.13 tolerated(1) benign(0.001) TCGA-CA-6717-01 1 26898372 26898372 C T RPS6KA1 Silent p.C604C 0.22 TCGA-CA-6717-01 1 27106432 27106432 A T ARID1A Missense_Mutation p.I2015F 0.12 probably_damaging(0.948) TCGA-CA-6717-01 1 27120787 27120787 T G PIGV Missense_Mutation p.F88V 0.10 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 1 27121700 27121700 T G PIGV Missense_Mutation p.F392C 0.22 deleterious(0) probably_damaging(0.971) TCGA-CA-6717-01 1 27332720 27332720 G A FAM46B Silent p.F331F 0.15 TCGA-CA-6717-01 1 27630278 27630278 C A WDTC1 Missense_Mutation p.F544L 0.17 deleterious(0.01) benign(0.396) TCGA-CA-6717-01 1 27706081 27706081 G A CD164L2 3'UTR 0.17 TCGA-CA-6717-01 1 27721740 27721740 T G GPR3 3'UTR 0.28 TCGA-CA-6717-01 1 27741383 27741383 C A WASF2 Missense_Mutation p.E204D 0.07 deleterious(0.05) unknown(0) TCGA-CA-6717-01 1 28241014 28241014 A C RPA2 5'UTR 0.17 TCGA-CA-6717-01 1 28293660 28293660 G T XKR8 Missense_Mutation p.Q379H 0.15 deleterious(0.03) benign(0.014) TCGA-CA-6717-01 1 28537123 28537123 T G DNAJC8 Missense_Mutation p.K88T 0.21 deleterious(0.02) possibly_damaging(0.864) TCGA-CA-6717-01 1 28555496 28555496 C T DNAJC8 Silent p.S39S 0.15 TCGA-CA-6717-01 1 28600559 28600559 C T SESN2 Silent p.L304L 0.12 TCGA-CA-6717-01 1 28944531 28944531 C A TAF12 Missense_Mutation p.K60N 0.11 deleterious(0) possibly_damaging(0.644) TCGA-CA-6717-01 1 29338391 29338391 C T EPB41 Silent p.S267S 0.23 TCGA-CA-6717-01 1 29528549 29528549 A G MECR Missense_Mutation p.I221T 0.20 deleterious(0) benign(0.095) TCGA-CA-6717-01 1 31423066 31423066 G A PUM1 Nonsense_Mutation p.R922* 0.25 TCGA-CA-6717-01 1 31740742 31740742 T C SNRNP40 Missense_Mutation p.K299R 0.14 tolerated(0.39) benign(0.109) TCGA-CA-6717-01 1 31766185 31766185 C A SNRNP40 Missense_Mutation p.R51I 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 31819575 31819575 T G ZCCHC17 Missense_Mutation p.C136G 0.14 deleterious(0) benign(0.232) TCGA-CA-6717-01 1 31819614 31819614 C T ZCCHC17 Intron 0.34 TCGA-CA-6717-01 1 32155418 32155418 T G COL16A1 Missense_Mutation p.E515A 0.15 unknown(0) TCGA-CA-6717-01 1 32198145 32198145 C T BAI2 Silent p.S1231S 0.11 TCGA-CA-6717-01 1 32256702 32256702 A G SPOCD1 Silent p.D1051D 0.16 TCGA-CA-6717-01 1 32265045 32265045 G A SPOCD1 Missense_Mutation p.R609W 0.25 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 1 32632805 32632805 C T KPNA6 Silent p.I384I 0.10 TCGA-CA-6717-01 1 32696824 32696824 T C EIF3I 3'UTR 0.14 TCGA-CA-6717-01 1 32849465 32849465 G A BSDC1 Missense_Mutation p.P125L 0.15 deleterious(0.01) possibly_damaging(0.556) TCGA-CA-6717-01 1 33145246 33145246 G T RBBP4 Missense_Mutation p.E406D 0.09 tolerated(0.39) benign(0.001) TCGA-CA-6717-01 1 33291997 33291997 T G S100PBP Missense_Mutation p.N99K 0.22 deleterious(0.04) benign(0.297) TCGA-CA-6717-01 1 33292113 33292113 T C S100PBP Missense_Mutation p.V138A 0.21 tolerated(1) benign(0.004) TCGA-CA-6717-01 1 33354655 33354655 C T HPCA Silent p.Y52Y 0.09 TCGA-CA-6717-01 1 3348597 3348597 G A PRDM16 Missense_Mutation p.D1197N 0.15 deleterious(0.01) possibly_damaging(0.889) TCGA-CA-6717-01 1 33560166 33560166 G A ADC Missense_Mutation p.G202D 0.17 tolerated(0.05) benign(0.013) TCGA-CA-6717-01 1 33988937 33988937 G T CSMD2 Missense_Mutation p.F3349L 0.26 tolerated(0.06) benign(0.008) TCGA-CA-6717-01 1 34035141 34035141 G A CSMD2 Missense_Mutation p.S2657F 0.08 deleterious(0) probably_damaging(0.945) TCGA-CA-6717-01 1 34046380 34046380 G A CSMD2 Missense_Mutation p.R2456W 0.21 tolerated(0.09) probably_damaging(0.978) TCGA-CA-6717-01 1 34080133 34080133 G A CSMD2 Missense_Mutation p.S1995F 0.22 deleterious(0.02) possibly_damaging(0.774) TCGA-CA-6717-01 1 34090778 34090778 G T CSMD2 Missense_Mutation p.F1751L 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 3415796 3415796 G A MEGF6 Silent p.S1000S 0.22 TCGA-CA-6717-01 1 3417648 3417648 T C MEGF6 Silent p.A819A 0.09 TCGA-CA-6717-01 1 34330254 34330254 C T HMGB4 Silent p.F154F 0.08 TCGA-CA-6717-01 1 34643415 34643415 C A C1orf94 Missense_Mutation p.L9I 0.15 tolerated_low_confidence(0.1) unknown(0) TCGA-CA-6717-01 1 34662927 34662927 C A C1orf94 Missense_Mutation p.S141Y 0.25 deleterious(0.05) probably_damaging(0.955) TCGA-CA-6717-01 1 34663450 34663450 A G C1orf94 Silent p.P315P 0.17 TCGA-CA-6717-01 1 34666572 34666572 G T C1orf94 Missense_Mutation p.K403N 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6717-01 1 35228195 35228195 C T GJB4 3'UTR 0.30 TCGA-CA-6717-01 1 35250818 35250818 T A GJB3 Missense_Mutation p.L152H 0.11 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 1 35259970 35259970 C T GJA4 Silent p.F52F 0.08 TCGA-CA-6717-01 1 35261319 35261319 G A GJA4 3'UTR 0.09 TCGA-CA-6717-01 1 35370739 35370739 A G DLGAP3 Silent p.V82V 0.14 TCGA-CA-6717-01 1 35370962 35370962 C T DLGAP3 Missense_Mutation p.R8Q 0.11 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-CA-6717-01 1 35469581 35469581 C A ZMYM6 Missense_Mutation p.K660N 0.25 tolerated(0.25) possibly_damaging(0.735) TCGA-CA-6717-01 1 35484956 35484956 C T ZMYM6 Silent p.S142S 0.12 TCGA-CA-6717-01 1 35579089 35579089 A G ZMYM1 Missense_Mutation p.Y553C 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 35579232 35579232 A G ZMYM1 Missense_Mutation p.T601A 0.11 tolerated(0.45) benign(0.012) TCGA-CA-6717-01 1 35579879 35579879 A G ZMYM1 Silent p.L816L 0.14 TCGA-CA-6717-01 1 35835671 35835671 A C ZMYM4 Missense_Mutation p.E294D 0.09 tolerated(0.26) benign(0.049) TCGA-CA-6717-01 1 35846924 35846924 T G ZMYM4 Missense_Mutation p.F416V 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 35885281 35885281 C T ZMYM4 3'UTR 0.14 TCGA-CA-6717-01 1 35920054 35920054 C T KIAA0319L Silent p.A563A 0.26 TCGA-CA-6717-01 1 35972577 35972577 A G KIAA0319L Missense_Mutation p.L101P 0.16 deleterious(0) possibly_damaging(0.878) TCGA-CA-6717-01 1 36029471 36029471 C T NCDN Silent p.L572L 0.24 TCGA-CA-6717-01 1 36181422 36181422 C T C1orf216 Silent p.K167K 0.18 TCGA-CA-6717-01 1 36227601 36227601 C T CLSPN Missense_Mutation p.R298Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 1 36228798 36228798 A G CLSPN Missense_Mutation p.I236T 0.09 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 1 36437667 36437667 C T AGO3 Nonsense_Mutation p.R119* 0.09 TCGA-CA-6717-01 1 36505912 36505912 T G AGO3 Nonsense_Mutation p.L681* 0.25 TCGA-CA-6717-01 1 3662193 3662193 C A TP73-AS1 RNA 0.18 TCGA-CA-6717-01 1 36637116 36637116 G A MAP7D1 Missense_Mutation p.V132M 0.10 benign(0.444) TCGA-CA-6717-01 1 36752737 36752737 C T THRAP3 Silent p.F302F 0.27 TCGA-CA-6717-01 1 36766519 36766519 C A THRAP3 Missense_Mutation p.S779Y 0.19 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 1 36772796 36772796 A C SH3D21 Missense_Mutation p.Q85H 0.08 deleterious(0.02) possibly_damaging(0.878) TCGA-CA-6717-01 1 3688025 3688025 C T CCDC27 Missense_Mutation p.P637S 0.14 deleterious(0.01) probably_damaging(0.966) TCGA-CA-6717-01 1 36933707 36933707 G T CSF3R Silent p.I564I 0.16 TCGA-CA-6717-01 1 36933796 36933796 G T CSF3R Missense_Mutation p.L535I 0.27 deleterious(0.01) possibly_damaging(0.754) TCGA-CA-6717-01 1 36935406 36935406 C A CSF3R Missense_Mutation p.D441Y 0.34 deleterious(0) possibly_damaging(0.758) TCGA-CA-6717-01 1 37270804 37270804 G T GRIK3 Silent p.I783I 0.11 TCGA-CA-6717-01 1 3740057 3740057 A G CEP104 Missense_Mutation p.C812R 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 3750435 3750435 A C CEP104 Missense_Mutation p.N550K 0.29 tolerated(0.09) benign(0.105) TCGA-CA-6717-01 1 38019741 38019741 C T SNIP1 Silent p.K30K 0.23 TCGA-CA-6717-01 1 38042122 38042122 G T GNL2 Missense_Mutation p.F315L 0.09 tolerated(0.07) benign(0.079) TCGA-CA-6717-01 1 38323305 38323305 T C MTF1 Missense_Mutation p.N9S 0.08 tolerated(0.67) benign(0.001) TCGA-CA-6717-01 1 39341085 39341085 T G GJA9 Missense_Mutation p.E229A 0.22 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 39341545 39341545 T C GJA9 Missense_Mutation p.R76G 0.14 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 39775920 39775920 C T MACF1 Nonsense_Mutation p.R979* 0.13 TCGA-CA-6717-01 1 39799331 39799331 G T MACF1 Intron 0.21 TCGA-CA-6717-01 1 39802007 39802007 T G MACF1 Intron 0.09 TCGA-CA-6717-01 1 39877348 39877349 - A KIAA0754 Frame_Shift_Ins p.E337Gfs*5 0.10 TCGA-CA-6717-01 1 39880345 39880345 T G KIAA0754 3'UTR 0.17 TCGA-CA-6717-01 1 39880919 39880919 C A KIAA0754 3'UTR 0.18 TCGA-CA-6717-01 1 39900160 39900160 G A MACF1 Silent p.E3818E 0.13 TCGA-CA-6717-01 1 39916756 39916756 C T MACF1 Missense_Mutation p.S4705L 0.10 probably_damaging(0.999) TCGA-CA-6717-01 1 40038204 40038204 C T PABPC4 Missense_Mutation p.R83H 0.19 deleterious(0) possibly_damaging(0.66) TCGA-CA-6717-01 1 40229330 40229330 T G BMP8B Intron 0.11 TCGA-CA-6717-01 1 40432312 40432312 A C MFSD2A Missense_Mutation p.I265L 0.15 tolerated(0.48) benign(0.052) TCGA-CA-6717-01 1 40536606 40536606 A C CAP1 Missense_Mutation p.K433N 0.09 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 1 40537135 40537135 T C CAP1 Missense_Mutation p.V453A 0.17 deleterious(0) possibly_damaging(0.819) TCGA-CA-6717-01 1 40542567 40542567 T C PPT1 Missense_Mutation p.S249G 0.10 tolerated(0.05) benign(0.219) TCGA-CA-6717-01 1 40701723 40701723 C A RLF Missense_Mutation p.S450Y 0.19 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 1 40702152 40702152 G T RLF Missense_Mutation p.R593I 0.16 deleterious(0.03) possibly_damaging(0.828) TCGA-CA-6717-01 1 40702225 40702225 G T RLF Missense_Mutation p.K617N 0.13 tolerated(0.07) benign(0.358) TCGA-CA-6717-01 1 40703889 40703889 T C RLF Missense_Mutation p.F1172S 0.27 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 1 40726640 40726640 T G ZMPSTE24 Missense_Mutation p.S85A 0.21 tolerated(0.2) benign(0.038) TCGA-CA-6717-01 1 40766821 40766821 G T COL9A2 3'UTR 0.14 TCGA-CA-6717-01 1 40766888 40766888 C T COL9A2 Missense_Mutation p.R679H 0.14 deleterious(0.03) probably_damaging(0.966) TCGA-CA-6717-01 1 40879843 40879843 G T SMAP2 Nonsense_Mutation p.E168* 0.19 TCGA-CA-6717-01 1 40928348 40928348 G T ZFP69B Missense_Mutation p.R231I 0.08 tolerated(0.15) benign(0.074) TCGA-CA-6717-01 1 40929032 40929032 G T ZFP69B Missense_Mutation p.R459I 0.10 deleterious(0) benign(0.229) TCGA-CA-6717-01 1 41012979 41012979 T C ZNF684 Silent p.S328S 0.11 TCGA-CA-6717-01 1 41237249 41237249 A G NFYC 3'Flank 0.14 TCGA-CA-6717-01 1 41461752 41461752 A C CTPS1 Intron 0.15 TCGA-CA-6717-01 1 41485992 41485992 G A SLFNL1 Missense_Mutation p.T114M 0.27 tolerated(0.45) benign(0.008) TCGA-CA-6717-01 1 42046543 42046543 G A HIVEP3 Missense_Mutation p.A1309V 0.15 benign(0.146) TCGA-CA-6717-01 1 42875719 42875719 C T RIMKLA Silent p.H182H 0.23 TCGA-CA-6717-01 1 42914310 42914310 C A ZMYND12 Splice_Site p.X85_splice 0.18 TCGA-CA-6717-01 1 42925590 42925590 G T PPCS Missense_Mutation p.R310I 0.16 deleterious(0.01) benign(0.037) TCGA-CA-6717-01 1 43055078 43055078 C A CCDC30 Missense_Mutation p.S436Y 0.16 deleterious(0.05) benign(0.103) TCGA-CA-6717-01 1 43650971 43650971 C A WDR65 Missense_Mutation p.L305M 0.08 tolerated(0.2) possibly_damaging(0.799) TCGA-CA-6717-01 1 43739510 43739510 T C TMEM125 3'UTR 0.12 TCGA-CA-6717-01 1 43770734 43770734 C T TIE1 Missense_Mutation p.R91C 0.13 deleterious(0) possibly_damaging(0.614) TCGA-CA-6717-01 1 43787289 43787289 A C TIE1 Missense_Mutation p.Y1083S 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 43830459 43830459 G A ELOVL1 Missense_Mutation p.R109W 0.24 tolerated(0.08) benign(0.168) TCGA-CA-6717-01 1 43895747 43895747 C A SZT2 Missense_Mutation p.F1401L 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-CA-6717-01 1 44083444 44083444 C T PTPRF Silent p.I1411I 0.14 TCGA-CA-6717-01 1 44290551 44290551 T G ST3GAL3 Missense_Mutation p.L135V 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.567) TCGA-CA-6717-01 1 44432665 44432665 C T IPO13 Missense_Mutation p.R863C 0.11 deleterious(0) benign(0.006) TCGA-CA-6717-01 1 44437261 44437261 C G DPH2 Missense_Mutation p.D229E 0.12 tolerated(0.45) benign(0.001) TCGA-CA-6717-01 1 44437641 44437641 A T DPH2 Missense_Mutation p.Q356L 0.14 deleterious(0) benign(0.143) TCGA-CA-6717-01 1 44584604 44584604 A G KLF17 Missense_Mutation p.M9V 0.19 tolerated(0.07) benign(0.026) TCGA-CA-6717-01 1 44877905 44877905 C T RNF220 Nonsense_Mutation p.R46* 0.19 TCGA-CA-6717-01 1 45474043 45474043 A G HECTD3 Intron 0.11 TCGA-CA-6717-01 1 45484215 45484215 G A ZSWIM5 Silent p.L1157L 0.11 TCGA-CA-6717-01 1 45794067 45794067 C A HPDL 3'UTR 0.23 TCGA-CA-6717-01 1 45808817 45808817 G T TOE1 Missense_Mutation p.D326Y 0.23 deleterious(0) probably_damaging(0.95) TCGA-CA-6717-01 1 45812452 45812452 C A TESK2 Splice_Site p.X265_splice 0.18 TCGA-CA-6717-01 1 46179967 46179967 T C IPP Missense_Mutation p.N494S 0.08 tolerated(0.11) possibly_damaging(0.895) TCGA-CA-6717-01 1 46499744 46499744 G A MAST2 Splice_Site p.X1225_splice 0.17 TCGA-CA-6717-01 1 46532705 46532705 A G PIK3R3 Missense_Mutation p.S125P 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 47279182 47279182 G A CYP4B1 Missense_Mutation p.G175D 0.22 tolerated(1) benign(0.003) TCGA-CA-6717-01 1 47333789 47333789 G T CYP4Z2P RNA 0.15 TCGA-CA-6717-01 1 47398482 47398482 C T CYP4A11 Missense_Mutation p.G439S 0.19 tolerated(0.39) benign(0.057) TCGA-CA-6717-01 1 47505128 47505128 G A CYP4X1 Missense_Mutation p.A333T 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 47548131 47548131 C T CYP4Z1 Silent p.L164L 0.08 TCGA-CA-6717-01 1 47582343 47582343 T A CYP4Z1 Missense_Mutation p.S430T 0.10 tolerated(0.15) benign(0.029) TCGA-CA-6717-01 1 47606452 47606452 T A CYP4A22 Missense_Mutation p.F66I 0.18 tolerated(0.48) benign(0.012) TCGA-CA-6717-01 1 47905526 47905526 A C FOXD2 3'UTR 0.15 TCGA-CA-6717-01 1 4834550 4834550 C A AJAP1 Silent p.I409I 0.14 TCGA-CA-6717-01 1 48697693 48697693 A G SLC5A9 Missense_Mutation p.N281S 0.09 tolerated(0.18) probably_damaging(0.971) TCGA-CA-6717-01 1 48703475 48703475 G A SLC5A9 Missense_Mutation p.A498T 0.09 deleterious(0.02) possibly_damaging(0.577) TCGA-CA-6717-01 1 49202013 49202013 C A BEND5 Missense_Mutation p.D336Y 0.17 deleterious(0) possibly_damaging(0.746) TCGA-CA-6717-01 1 49202066 49202066 G A BEND5 Missense_Mutation p.T318I 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-CA-6717-01 1 50162983 50162983 A G AGBL4 Splice_Site p.X94_splice 0.10 TCGA-CA-6717-01 1 50163035 50163035 G A AGBL4 Missense_Mutation p.R78C 0.21 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 1 50884447 50884447 C A DMRTA2 Missense_Mutation p.D507Y 0.27 deleterious(0.04) unknown(0) TCGA-CA-6717-01 1 51171544 51171544 T G FAF1 Missense_Mutation p.N191H 0.19 tolerated(0.2) possibly_damaging(0.641) TCGA-CA-6717-01 1 51567913 51567913 C A C1orf185 Nonsense_Mutation p.S3* 0.10 TCGA-CA-6717-01 1 51929380 51929380 G A EPS15 Missense_Mutation p.L156F 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 1 52214068 52214068 A C OSBPL9 Missense_Mutation p.N187H 0.17 tolerated(0.09) benign(0.281) TCGA-CA-6717-01 1 52520718 52520718 G T TXNDC12 Missense_Mutation p.F17L 0.11 tolerated(0.34) benign(0) TCGA-CA-6717-01 1 52525517 52525517 A G BTF3L4 5'UTR 0.08 TCGA-CA-6717-01 1 52698884 52698884 G T ZFYVE9 Missense_Mutation p.E2D 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CA-6717-01 1 52704859 52704859 A C ZFYVE9 Missense_Mutation p.Q590H 0.14 tolerated(0.06) benign(0.302) TCGA-CA-6717-01 1 52744180 52744180 G T ZFYVE9 Missense_Mutation p.E921D 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6717-01 1 52871426 52871426 C T PRPF38A Missense_Mutation p.P69S 0.07 deleterious(0) possibly_damaging(0.792) TCGA-CA-6717-01 1 52882499 52882499 T G PRPF38A 3'UTR 0.15 TCGA-CA-6717-01 1 52911464 52911464 C A ZCCHC11 Nonsense_Mutation p.E1273* 0.13 TCGA-CA-6717-01 1 52912047 52912047 C T ZCCHC11 Missense_Mutation p.R1194H 0.12 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 1 52940872 52940872 C T ZCCHC11 Missense_Mutation p.E787K 0.13 tolerated(0.56) benign(0.341) TCGA-CA-6717-01 1 52959290 52959290 C A ZCCHC11 Missense_Mutation p.K437N 0.17 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 1 52962741 52962741 C A ZCCHC11 Missense_Mutation p.D372Y 0.09 deleterious(0) probably_damaging(0.914) TCGA-CA-6717-01 1 52981555 52981555 T C ZCCHC11 Intron 0.20 TCGA-CA-6717-01 1 53074000 53074000 T C GPX7 Missense_Mutation p.V156A 0.15 deleterious(0.03) benign(0.008) TCGA-CA-6717-01 1 53320240 53320240 C T ZYG11A Missense_Mutation p.P65L 0.22 tolerated(0.11) benign(0.281) TCGA-CA-6717-01 1 53320294 53320294 C T ZYG11A Missense_Mutation p.T83I 0.10 deleterious(0) benign(0.136) TCGA-CA-6717-01 1 53322707 53322707 C G ZYG11A Silent p.G98G 0.12 TCGA-CA-6717-01 1 54354646 54354646 A G YIPF1 5'UTR 0.18 TCGA-CA-6717-01 1 54354649 54354649 T G YIPF1 5'UTR 0.16 TCGA-CA-6717-01 1 54370417 54370417 T G DIO1 Missense_Mutation p.L139R 0.19 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 1 54417828 54417828 T G LRRC42 Silent p.S52S 0.23 TCGA-CA-6717-01 1 54427999 54427999 A G LRRC42 Missense_Mutation p.T282A 0.13 tolerated(0.54) benign(0.005) TCGA-CA-6717-01 1 54512963 54512963 C T TMEM59 Missense_Mutation p.R91Q 0.10 tolerated(0.57) benign(0.033) TCGA-CA-6717-01 1 54670966 54670966 A G MRPL37 Splice_Site p.X177_splice 0.09 TCGA-CA-6717-01 1 54692745 54692745 A G SSBP3 3'UTR 0.12 TCGA-CA-6717-01 1 54870306 54870306 C T SSBP3 Missense_Mutation p.R45Q 0.23 deleterious(0.02) benign(0.147) TCGA-CA-6717-01 1 55074669 55074669 T C ACOT11 Intron 0.09 TCGA-CA-6717-01 1 55081818 55081818 A G FAM151A Missense_Mutation p.V97A 0.13 deleterious(0.03) possibly_damaging(0.764) TCGA-CA-6717-01 1 55152111 55152111 G T MROH7 Missense_Mutation p.V901L 0.28 tolerated(0.3) benign(0.011) TCGA-CA-6717-01 1 55183319 55183319 C A TTC4 Nonsense_Mutation p.Y128* 0.17 TCGA-CA-6717-01 1 55197216 55197216 G A TTC4 Missense_Mutation p.G247S 0.20 tolerated(0.06) benign(0.025) TCGA-CA-6717-01 1 55451925 55451925 G A TMEM61 Silent p.P57P 0.18 TCGA-CA-6717-01 1 55600045 55600045 G A USP24 Silent p.N1081N 0.09 TCGA-CA-6717-01 1 57159517 57159517 C T PRKAA2 Silent p.I185I 0.09 TCGA-CA-6717-01 1 57173295 57173295 G A PRKAA2 Missense_Mutation p.S523N 0.28 tolerated_low_confidence(0.2) benign(0.097) TCGA-CA-6717-01 1 57185715 57185715 G T C1orf168 Silent p.L715L 0.15 TCGA-CA-6717-01 1 57185880 57185880 T G C1orf168 Missense_Mutation p.Q699H 0.10 deleterious(0.03) probably_damaging(0.937) TCGA-CA-6717-01 1 57206396 57206396 C A C1orf168 Missense_Mutation p.K559N 0.15 tolerated(0.06) possibly_damaging(0.453) TCGA-CA-6717-01 1 57257953 57257953 G A C1orf168 Missense_Mutation p.T178I 0.11 tolerated(0.25) benign(0.21) TCGA-CA-6717-01 1 57420418 57420418 A G C8B Silent p.I158I 0.19 TCGA-CA-6717-01 1 57538001 57538001 C T DAB1 Silent p.G131G 0.24 TCGA-CA-6717-01 1 58996321 58996321 T C OMA1 Silent p.R364R 0.12 TCGA-CA-6717-01 1 59156025 59156025 T G MYSM1 Missense_Mutation p.K95Q 0.19 tolerated_low_confidence(0.11) possibly_damaging(0.793) TCGA-CA-6717-01 1 60503710 60503710 C A C1orf87 Missense_Mutation p.A273S 0.15 tolerated(0.55) benign(0.003) TCGA-CA-6717-01 1 6158526 6158526 T C KCNAB2 Intron 0.18 TCGA-CA-6717-01 1 61869764 61869764 C A NFIA Intron 0.12 TCGA-CA-6717-01 1 6188585 6188585 T G CHD5 Missense_Mutation p.K1235T 0.09 deleterious(0.04) benign(0.041) TCGA-CA-6717-01 1 6209428 6209428 C T CHD5 Missense_Mutation p.E347K 0.11 deleterious(0.02) probably_damaging(0.98) TCGA-CA-6717-01 1 62228853 62228853 T C INADL Splice_Site p.X63_splice 0.21 TCGA-CA-6717-01 1 6246851 6246851 A G RPL22 Missense_Mutation p.Y90H 0.11 tolerated(0.06) possibly_damaging(0.756) TCGA-CA-6717-01 1 62672294 62672294 A G L1TD1 5'UTR 0.10 TCGA-CA-6717-01 1 62673199 62673199 G T L1TD1 Missense_Mutation p.R300I 0.19 deleterious(0.01) unknown(0) TCGA-CA-6717-01 1 62916312 62916312 A C USP1 Missense_Mutation p.K673T 0.16 deleterious(0) probably_damaging(0.971) TCGA-CA-6717-01 1 62920985 62920985 A C DOCK7 3'UTR 0.21 TCGA-CA-6717-01 1 63070506 63070506 A G ANGPTL3 3'UTR 0.16 TCGA-CA-6717-01 1 6314192 6314192 C A GPR153 Missense_Mutation p.K124N 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-CA-6717-01 1 63307175 63307175 G A ATG4C Missense_Mutation p.R389Q 0.20 tolerated(0.26) benign(0.132) TCGA-CA-6717-01 1 63872767 63872767 G A ALG6 Missense_Mutation p.G155D 0.24 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 1 63885090 63885090 A C ALG6 Missense_Mutation p.K346T 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 63997632 63997632 C A EFCAB7 Nonsense_Mutation p.S110* 0.11 TCGA-CA-6717-01 1 64097431 64097431 C T PGM1 Silent p.I238I 0.12 TCGA-CA-6717-01 1 64101999 64101999 T C PGM1 Missense_Mutation p.F341S 0.10 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 1 64605877 64605877 C T ROR1 Silent p.F232F 0.14 TCGA-CA-6717-01 1 64644235 64644235 G A ROR1 Silent p.Q837Q 0.09 TCGA-CA-6717-01 1 64686585 64686585 T G UBE2U Missense_Mutation p.C167W 0.15 tolerated(0.18) benign(0.107) TCGA-CA-6717-01 1 65098411 65098411 C T CACHD1 Silent p.I207I 0.29 TCGA-CA-6717-01 1 65157276 65157276 C A CACHD1 3'UTR 0.13 TCGA-CA-6717-01 1 65330526 65330526 G T JAK1 Missense_Mutation p.H374N 0.25 deleterious(0.01) benign(0.151) TCGA-CA-6717-01 1 65330550 65330550 A C JAK1 Missense_Mutation p.F366V 0.10 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 65332626 65332626 T C JAK1 Missense_Mutation p.N305D 0.09 tolerated(0.63) benign(0) TCGA-CA-6717-01 1 65691785 65691785 G A AK4 Silent p.T199T 0.19 TCGA-CA-6717-01 1 66087078 66087078 T C LEPR Missense_Mutation p.I845T 0.11 deleterious(0.04) benign(0.056) TCGA-CA-6717-01 1 66102421 66102421 A C LEPR Missense_Mutation p.K1074T 0.10 deleterious(0) benign(0.001) TCGA-CA-6717-01 1 6636588 6636588 A G TAS1R1 Silent p.G458G 0.29 TCGA-CA-6717-01 1 6638856 6638856 C T TAS1R1 Silent p.L580L 0.24 TCGA-CA-6717-01 1 6639400 6639400 G T TAS1R1 Missense_Mutation p.C761F 0.32 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 6648248 6648248 G A ZBTB48 Missense_Mutation p.R503Q 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 1 6655334 6655334 T C KLHL21 Intron 0.23 TCGA-CA-6717-01 1 67101642 67101642 G A SGIP1 Missense_Mutation p.E39K 0.28 tolerated_low_confidence(0.38) benign(0) TCGA-CA-6717-01 1 67236072 67236072 C T TCTEX1D1 Missense_Mutation p.S41F 0.09 deleterious(0) probably_damaging(0.936) TCGA-CA-6717-01 1 67299328 67299328 C A WDR78 Missense_Mutation p.K651N 0.13 deleterious(0.01) probably_damaging(0.954) TCGA-CA-6717-01 1 67340576 67340577 - T WDR78 Frame_Shift_Ins p.E230Rfs*21 0.21 TCGA-CA-6717-01 1 67425379 67425379 G T MIER1 Nonsense_Mutation p.E218* 0.13 TCGA-CA-6717-01 1 67450527 67450527 T G MIER1 Missense_Mutation p.F548V 0.13 deleterious_low_confidence(0.01) benign(0.05) TCGA-CA-6717-01 1 67559068 67559068 C A C1orf141 Missense_Mutation p.V275L 0.08 deleterious(0.03) benign(0.001) TCGA-CA-6717-01 1 67559238 67559238 C T C1orf141 Missense_Mutation p.R218Q 0.12 tolerated(1) benign(0) TCGA-CA-6717-01 1 67561096 67561096 G T C1orf141 Missense_Mutation p.S142Y 0.12 tolerated(1) probably_damaging(0.919) TCGA-CA-6717-01 1 67724321 67724321 C T IL23R Missense_Mutation p.S467L 0.11 deleterious(0.01) benign(0.018) TCGA-CA-6717-01 1 67786098 67786098 T C IL12RB2 Missense_Mutation p.I16T 0.17 tolerated(0.63) benign(0.001) TCGA-CA-6717-01 1 67792510 67792510 T G IL12RB2 Missense_Mutation p.L153V 0.10 deleterious(0) possibly_damaging(0.795) TCGA-CA-6717-01 1 67885796 67885796 T C SERBP1 Missense_Mutation p.N298D 0.09 tolerated(0.83) benign(0.006) TCGA-CA-6717-01 1 68564473 68564473 A C WLS Intron 0.20 TCGA-CA-6717-01 1 68915639 68915639 A C RPE65 5'UTR 0.21 TCGA-CA-6717-01 1 68944991 68944991 A G DEPDC1 Missense_Mutation p.F650L 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 68948097 68948097 A C DEPDC1 Missense_Mutation p.F465C 0.10 tolerated(0.18) benign(0.235) TCGA-CA-6717-01 1 69733 69733 C A OR4F5 Missense_Mutation p.L215I 0.09 tolerated(0.06) probably_damaging(0.915) TCGA-CA-6717-01 1 70034287 70034287 T C LRRC7 5'UTR 0.16 TCGA-CA-6717-01 1 70291506 70291506 C A LRRC7 Missense_Mutation p.S128Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 1 70504345 70504345 C A LRRC7 Silent p.V908V 0.22 TCGA-CA-6717-01 1 70505331 70505331 T C LRRC7 Missense_Mutation p.L1237S 0.14 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 70652960 70652960 T G LRRC40 Missense_Mutation p.K132T 0.09 deleterious(0.02) benign(0.394) TCGA-CA-6717-01 1 70899612 70899612 A C CTH Missense_Mutation p.I327L 0.24 tolerated(0.23) benign(0.001) TCGA-CA-6717-01 1 71318519 71318519 G A PTGER3 3'UTR 0.13 TCGA-CA-6717-01 1 71478016 71478016 C T PTGER3 Missense_Mutation p.R350K 0.14 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 1 71538205 71538205 C A ZRANB2 Nonsense_Mutation p.E110* 0.20 TCGA-CA-6717-01 1 72748185 72748186 - G NEGR1 5'UTR 0.14 TCGA-CA-6717-01 1 7309598 7309598 A G CAMTA1 Missense_Mutation p.Y117C 0.14 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 74507036 74507036 G T LRRIQ3 Missense_Mutation p.L527I 0.17 tolerated(0.43) benign(0.01) TCGA-CA-6717-01 1 74507442 74507442 C T LRRIQ3 Silent p.K391K 0.21 TCGA-CA-6717-01 1 74670325 74670325 G A FPGT Silent p.T198T 0.16 TCGA-CA-6717-01 1 74671459 74671459 G T FPGT Missense_Mutation p.M576I 0.18 deleterious(0.04) possibly_damaging(0.566) TCGA-CA-6717-01 1 74716360 74716360 G T FPGT-TNNI3K Missense_Mutation p.K194N 0.14 tolerated(1) benign(0) TCGA-CA-6717-01 1 75038333 75038333 C A C1orf173 Nonsense_Mutation p.E1021* 0.10 TCGA-CA-6717-01 1 75072448 75072448 T C C1orf173 Silent p.R442R 0.09 TCGA-CA-6717-01 1 75608959 75608959 G T LHX8 Missense_Mutation p.E182D 0.16 tolerated(0.28) benign(0.366) TCGA-CA-6717-01 1 75669451 75669451 C T SLC44A5 3'Flank 0.21 TCGA-CA-6717-01 1 75688085 75688085 C T SLC44A5 Missense_Mutation p.R349Q 0.19 deleterious(0.03) benign(0.202) TCGA-CA-6717-01 1 75702703 75702703 C A SLC44A5 Missense_Mutation p.D237Y 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 76257182 76257182 G A RABGGTB Missense_Mutation p.E169K 0.18 tolerated(0.26) benign(0.007) TCGA-CA-6717-01 1 76342620 76342620 G A MSH4 Splice_Site p.X436_splice 0.19 TCGA-CA-6717-01 1 76397839 76397839 C A ASB17 Missense_Mutation p.R46S 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-CA-6717-01 1 76779647 76779647 G A ST6GALNAC3 Missense_Mutation p.R59Q 0.17 benign(0.013) TCGA-CA-6717-01 1 77627340 77627340 C T PIGK Missense_Mutation p.R214Q 0.09 tolerated(0.35) benign(0.041) TCGA-CA-6717-01 1 7798031 7798031 C A CAMTA1 Missense_Mutation p.P1224H 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6717-01 1 7807838 7807838 A G CAMTA1 Silent p.K1562K 0.15 TCGA-CA-6717-01 1 78098971 78098971 A C ZZZ3 Missense_Mutation p.F23L 0.17 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 1 78177340 78177340 C A USP33 Intron 0.20 TCGA-CA-6717-01 1 78267110 78267110 G A FAM73A Missense_Mutation p.R97H 0.20 tolerated(0.08) probably_damaging(0.991) TCGA-CA-6717-01 1 78383725 78383725 T C NEXN Splice_Site p.X100_splice 0.08 TCGA-CA-6717-01 1 78383809 78383809 G A NEXN Splice_Site p.X100_splice 0.16 TCGA-CA-6717-01 1 78444646 78444646 C T FUBP1 Missense_Mutation p.A15T 0.24 tolerated_low_confidence(0.67) benign(0.119) TCGA-CA-6717-01 1 7906825 7906825 C A UTS2 3'Flank 0.26 TCGA-CA-6717-01 1 79125069 79125069 C A IFI44 Missense_Mutation p.H305N 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 79128470 79128470 G A IFI44 Missense_Mutation p.D399N 0.08 tolerated(0.16) benign(0.149) TCGA-CA-6717-01 1 79355460 79355460 A G ELTD1 3'UTR 0.08 TCGA-CA-6717-01 1 79356641 79356641 A C ELTD1 3'UTR 0.11 TCGA-CA-6717-01 1 79356755 79356755 T C ELTD1 3'UTR 0.12 TCGA-CA-6717-01 1 79470865 79470865 T G ELTD1 Missense_Mutation p.N21T 0.19 tolerated_low_confidence(0.48) benign(0.066) TCGA-CA-6717-01 1 7980847 7980847 T C TNFRSF9 3'UTR 0.22 TCGA-CA-6717-01 1 7997809 7997809 T G TNFRSF9 Missense_Mutation p.K118N 0.19 deleterious(0.01) benign(0.339) TCGA-CA-6717-01 1 82302654 82302654 C A LPHN2 5'UTR 0.10 TCGA-CA-6717-01 1 82408841 82408841 C T LPHN2 Missense_Mutation p.R196C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 82409145 82409145 G A LPHN2 Missense_Mutation p.R297Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 1 82433867 82433867 C T LPHN2 Missense_Mutation p.A819V 0.16 tolerated(0.06) possibly_damaging(0.832) TCGA-CA-6717-01 1 82450381 82450381 T C LPHN2 Missense_Mutation p.S1116P 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 1 8399738 8399738 G A SLC45A1 Missense_Mutation p.D654N 0.22 tolerated(0.06) possibly_damaging(0.471) TCGA-CA-6717-01 1 8399749 8399749 G A SLC45A1 Silent p.Q657Q 0.21 TCGA-CA-6717-01 1 84376944 84376944 C T TTLL7 Missense_Mutation p.E564K 0.08 tolerated(0.08) benign(0.042) TCGA-CA-6717-01 1 84412930 84412930 A G TTLL7 Missense_Mutation p.V128A 0.16 tolerated(0.13) benign(0.012) TCGA-CA-6717-01 1 84415575 84415575 C A TTLL7 Missense_Mutation p.E84D 0.16 tolerated(0.21) benign(0.246) TCGA-CA-6717-01 1 84768893 84768893 A G SAMD13 Silent p.E6E 0.10 TCGA-CA-6717-01 1 85035704 85035704 T G CTBS Missense_Mutation p.E145D 0.22 tolerated(0.4) benign(0.012) TCGA-CA-6717-01 1 85113245 85113245 A G SSX2IP Silent p.N572N 0.06 TCGA-CA-6717-01 1 8526001 8526001 C T RERE Nonsense_Mutation p.W396* 0.10 TCGA-CA-6717-01 1 85392399 85392399 C A MCOLN2 Missense_Mutation p.R557I 0.12 tolerated(0.19) benign(0) TCGA-CA-6717-01 1 85550323 85550323 C A WDR63 Missense_Mutation p.S162Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 1 85551532 85551532 C T WDR63 Nonsense_Mutation p.R187* 0.13 TCGA-CA-6717-01 1 85583513 85583513 T G WDR63 Missense_Mutation p.F630V 0.08 tolerated(0.36) benign(0.002) TCGA-CA-6717-01 1 85595768 85595768 G T WDR63 Missense_Mutation p.M835I 0.07 tolerated(0.43) benign(0.001) TCGA-CA-6717-01 1 85598536 85598536 A T WDR63 Splice_Site p.X845_splice 0.09 TCGA-CA-6717-01 1 85630231 85630231 A C SYDE2 Missense_Mutation p.H1021Q 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6717-01 1 85630305 85630305 T C SYDE2 Missense_Mutation p.N997D 0.09 tolerated(0.12) possibly_damaging(0.781) TCGA-CA-6717-01 1 85790564 85790564 G T DDAH1 Silent p.I200I 0.21 TCGA-CA-6717-01 1 85817207 85817207 G T DDAH1 Silent p.I153I 0.19 TCGA-CA-6717-01 1 86171989 86171989 G A ZNHIT6 Nonsense_Mutation p.R258* 0.22 TCGA-CA-6717-01 1 86282541 86282541 C T COL24A1 Missense_Mutation p.G1294E 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 86334489 86334489 A G COL24A1 Silent p.G1056G 0.19 TCGA-CA-6717-01 1 86591728 86591728 A C COL24A1 Missense_Mutation p.I97M 0.09 deleterious(0) possibly_damaging(0.626) TCGA-CA-6717-01 1 86814481 86814481 C A ODF2L 3'UTR 0.10 TCGA-CA-6717-01 1 86820228 86820228 T G ODF2L Missense_Mutation p.E584D 0.09 deleterious(0.02) benign(0.22) TCGA-CA-6717-01 1 86889957 86889957 T G CLCA2 Silent p.P9P 0.12 TCGA-CA-6717-01 1 86920993 86920993 A C CLCA2 Missense_Mutation p.N872T 0.17 tolerated(0.51) benign(0.007) TCGA-CA-6717-01 1 86934686 86934686 T C CLCA1 Missense_Mutation p.L11S 0.14 tolerated(0.05) probably_damaging(1) TCGA-CA-6717-01 1 86965478 86965478 T G CLCA1 Missense_Mutation p.I832S 0.08 tolerated(0.07) benign(0.164) TCGA-CA-6717-01 1 87031133 87031133 C A CLCA4 Missense_Mutation p.S245Y 0.26 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 1 87040226 87040226 G A CLCA4 Missense_Mutation p.E491K 0.20 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 1 87188279 87188279 G T SH3GLB1 Nonsense_Mutation p.E134* 0.06 TCGA-CA-6717-01 1 87329250 87329250 G A SEP15 Silent p.D132D 0.20 TCGA-CA-6717-01 1 89271191 89271191 C A PKN2 Missense_Mutation p.L505I 0.18 deleterious(0.02) possibly_damaging(0.792) TCGA-CA-6717-01 1 8928072 8928072 G A ENO1 Silent p.I95I 0.18 TCGA-CA-6717-01 1 89287627 89287627 T C PKN2 Silent p.F761F 0.12 TCGA-CA-6717-01 1 89418795 89418795 A C CCBL2 Nonsense_Mutation p.L302* 0.19 TCGA-CA-6717-01 1 89418796 89418796 A C CCBL2 Missense_Mutation p.L302V 0.13 deleterious(0.01) benign(0.355) TCGA-CA-6717-01 1 89448414 89448414 A G RBMXL1 Missense_Mutation p.S366P 0.08 deleterious(0) unknown(0) TCGA-CA-6717-01 1 89477439 89477439 C A GBP3 Missense_Mutation p.K380N 0.24 deleterious(0.02) benign(0.043) TCGA-CA-6717-01 1 89524696 89524696 T C GBP1 Silent p.R153R 0.15 TCGA-CA-6717-01 1 89575548 89575548 G A GBP2 Missense_Mutation p.R491C 0.13 tolerated(0.06) benign(0.131) TCGA-CA-6717-01 1 89618109 89618109 G A GBP7 Missense_Mutation p.S156L 0.14 deleterious(0) probably_damaging(0.923) TCGA-CA-6717-01 1 89655813 89655813 C T GBP4 Missense_Mutation p.D369N 0.10 deleterious(0.05) benign(0.078) TCGA-CA-6717-01 1 89657011 89657011 G T GBP4 Missense_Mutation p.F283L 0.10 deleterious(0) possibly_damaging(0.873) TCGA-CA-6717-01 1 89729526 89729526 C A GBP5 Missense_Mutation p.A419S 0.10 tolerated(1) benign(0.021) TCGA-CA-6717-01 1 89844118 89844118 G A GBP6 Missense_Mutation p.G191S 0.18 deleterious(0.01) probably_damaging(0.926) TCGA-CA-6717-01 1 89889899 89889899 A G GBP1P1 RNA 0.13 TCGA-CA-6717-01 1 90049142 90049142 C A LRRC8B Silent p.I311I 0.19 TCGA-CA-6717-01 1 90178954 90178954 C A LRRC8C Silent p.I275I 0.20 TCGA-CA-6717-01 1 9022651 9022651 G T CA6 Missense_Mutation p.K169N 0.16 tolerated(0.25) benign(0.003) TCGA-CA-6717-01 1 90400639 90400639 G A LRRC8D Missense_Mutation p.R671H 0.10 tolerated(0.05) probably_damaging(0.984) TCGA-CA-6717-01 1 90400781 90400781 C T LRRC8D Silent p.L718L 0.11 TCGA-CA-6717-01 1 90472989 90472989 G A ZNF326 Missense_Mutation p.E99K 0.15 tolerated(0.13) probably_damaging(0.935) TCGA-CA-6717-01 1 90482919 90482919 G T ZNF326 Nonsense_Mutation p.E324* 0.09 TCGA-CA-6717-01 1 9078430 9078430 G T SLC2A7 Silent p.I147I 0.12 TCGA-CA-6717-01 1 9079291 9079291 C T SLC2A7 Missense_Mutation p.R138Q 0.24 deleterious(0.02) possibly_damaging(0.908) TCGA-CA-6717-01 1 9099611 9099611 G A SLC2A5 Silent p.A332A 0.10 TCGA-CA-6717-01 1 9107761 9107761 G T SLC2A5 Missense_Mutation p.S109Y 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 91180309 91180309 T C BARHL2 Silent p.T210T 0.14 TCGA-CA-6717-01 1 91182574 91182574 G A BARHL2 Missense_Mutation p.T60M 0.19 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CA-6717-01 1 91403179 91403179 C T ZNF644 Missense_Mutation p.R1184K 0.08 tolerated(0.97) benign(0.001) TCGA-CA-6717-01 1 91403212 91403212 T G ZNF644 Missense_Mutation p.E1173A 0.08 tolerated(0.06) probably_damaging(0.995) TCGA-CA-6717-01 1 91404344 91404344 T G ZNF644 Missense_Mutation p.E856A 0.16 tolerated_low_confidence(0.12) probably_damaging(0.996) TCGA-CA-6717-01 1 91778968 91778968 G T HFM1 Missense_Mutation p.S1110Y 0.19 deleterious(0.02) benign(0.187) TCGA-CA-6717-01 1 91784919 91784919 G A HFM1 Missense_Mutation p.P871S 0.11 tolerated(0.15) possibly_damaging(0.449) TCGA-CA-6717-01 1 91788663 91788663 G A HFM1 Missense_Mutation p.R841W 0.19 deleterious(0.05) benign(0.12) TCGA-CA-6717-01 1 91859727 91859727 C A HFM1 Missense_Mutation p.E139D 0.09 tolerated_low_confidence(0.47) benign(0.004) TCGA-CA-6717-01 1 91979551 91979551 G T CDC7 Missense_Mutation p.R290I 0.10 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 1 92178032 92178032 G A TGFBR3 Missense_Mutation p.S645L 0.15 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 1 92442915 92442915 G A BRDT Missense_Mutation p.V312I 0.17 tolerated(1) benign(0) TCGA-CA-6717-01 1 92445152 92445152 G T BRDT Missense_Mutation p.K375N 0.27 deleterious(0) benign(0.227) TCGA-CA-6717-01 1 92446289 92446289 G T BRDT Missense_Mutation p.K459N 0.20 deleterious(0.02) benign(0.053) TCGA-CA-6717-01 1 92457858 92457858 C G BRDT Missense_Mutation p.T701R 0.13 tolerated(0.19) benign(0) TCGA-CA-6717-01 1 92498141 92498141 A G EPHX4 Missense_Mutation p.E104G 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 92634495 92634495 C T KIAA1107 Missense_Mutation p.R68C 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 92647379 92647379 C A KIAA1107 Missense_Mutation p.S942Y 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 1 92647891 92647891 C T KIAA1107 Nonsense_Mutation p.R1113* 0.14 TCGA-CA-6717-01 1 92711118 92711118 G A C1orf146 Missense_Mutation p.D144N 0.08 deleterious(0.03) benign(0.03) TCGA-CA-6717-01 1 93073225 93073225 C A EVI5 Missense_Mutation p.E613D 0.18 tolerated(0.19) benign(0.008) TCGA-CA-6717-01 1 93300390 93300390 G A RPL5 Missense_Mutation p.E82K 0.28 tolerated(0.05) probably_damaging(0.992) TCGA-CA-6717-01 1 93620328 93620328 A C TMED5 Missense_Mutation p.F197V 0.19 deleterious(0.01) possibly_damaging(0.898) TCGA-CA-6717-01 1 93680314 93680314 G T CCDC18 Missense_Mutation p.D557Y 0.28 tolerated(1) benign(0.031) TCGA-CA-6717-01 1 93712459 93712459 T G CCDC18 Nonsense_Mutation p.L1102* 0.13 TCGA-CA-6717-01 1 94140186 94140186 C T BCAR3 Missense_Mutation p.E101K 0.33 tolerated(0.13) benign(0.006) TCGA-CA-6717-01 1 94335381 94335381 A C DNTTIP2 3'UTR 0.19 TCGA-CA-6717-01 1 94343244 94343244 T C DNTTIP2 Missense_Mutation p.T83A 0.09 tolerated(0.63) benign(0.015) TCGA-CA-6717-01 1 94485177 94485177 G A ABCA4 Silent p.S1719S 0.13 TCGA-CA-6717-01 1 94514458 94514458 T G ABCA4 Missense_Mutation p.E903D 0.07 tolerated(0.31) benign(0.008) TCGA-CA-6717-01 1 94520861 94520861 G T ABCA4 Missense_Mutation p.S798Y 0.27 deleterious(0.01) possibly_damaging(0.846) TCGA-CA-6717-01 1 94640030 94640030 C T ARHGAP29 Missense_Mutation p.A1061T 0.19 tolerated(0.91) benign(0) TCGA-CA-6717-01 1 94655700 94655700 A G ARHGAP29 Intron 0.22 TCGA-CA-6717-01 1 94655733 94655733 C T ARHGAP29 Intron 0.33 TCGA-CA-6717-01 1 94685937 94685937 C A ARHGAP29 Nonsense_Mutation p.E73* 0.18 TCGA-CA-6717-01 1 95322930 95322930 A C SLC44A3 Missense_Mutation p.K371T 0.24 tolerated(0.15) benign(0.012) TCGA-CA-6717-01 1 95358036 95358036 C T SLC44A3 Missense_Mutation p.S607L 0.12 deleterious(0) possibly_damaging(0.907) TCGA-CA-6717-01 1 95360423 95360423 A G SLC44A3 Missense_Mutation p.D636G 0.10 tolerated(0.3) benign(0.001) TCGA-CA-6717-01 1 95360455 95360455 G T SLC44A3 Nonsense_Mutation p.E647* 0.09 TCGA-CA-6717-01 1 95448770 95448770 G A ALG14 Silent p.Y171Y 0.14 TCGA-CA-6717-01 1 97243498 97243498 A G PTBP2 Missense_Mutation p.K235R 0.07 deleterious(0.05) benign(0.007) TCGA-CA-6717-01 1 97278447 97278447 T G PTBP2 Missense_Mutation p.F451V 0.08 deleterious(0.01) probably_damaging(0.973) TCGA-CA-6717-01 1 97278841 97278841 A C PTBP2 Missense_Mutation p.K492N 0.23 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 1 9780845 9780845 C T PIK3CD Silent p.L523L 0.15 TCGA-CA-6717-01 1 98039523 98039523 C A DPYD Nonsense_Mutation p.E378* 0.20 TCGA-CA-6717-01 1 9811714 9811714 C T CLSTN1 Missense_Mutation p.D156N 0.09 deleterious(0.02) probably_damaging(0.979) TCGA-CA-6717-01 1 98164987 98164987 T C DPYD Missense_Mutation p.I200M 0.12 deleterious(0.04) possibly_damaging(0.657) TCGA-CA-6717-01 1 99380374 99380374 C A LPPR5 Nonsense_Mutation p.E301* 0.09 TCGA-CA-6717-01 1 99470138 99470138 G A LPPR5 Silent p.F30F 0.16 TCGA-CA-6717-01 1 99762315 99762315 C T LPPR4 Missense_Mutation p.L144F 0.17 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 20 10286879 10286879 C T SNAP25 3'UTR 0.19 TCGA-CA-6717-01 20 10393928 10393928 C T MKKS Missense_Mutation p.A79T 0.09 tolerated(0.84) benign(0.03) TCGA-CA-6717-01 20 10603808 10603808 T G SLX4IP Silent p.A336A 0.17 TCGA-CA-6717-01 20 10621808 10621808 C T JAG1 Missense_Mutation p.A1001T 0.23 tolerated(0.3) benign(0.001) TCGA-CA-6717-01 20 1161887 1161887 C T TMEM74B Missense_Mutation p.A126T 0.27 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 20 1218688 1218688 G A RAD21L1 Missense_Mutation p.G159E 0.17 deleterious(0.05) benign(0.038) TCGA-CA-6717-01 20 1226901 1226901 A G RAD21L1 Silent p.L452L 0.20 TCGA-CA-6717-01 20 126299 126299 C T DEFB126 Missense_Mutation p.S101L 0.19 deleterious(0.03) unknown(0) TCGA-CA-6717-01 20 1276961 1276961 C T SNPH Intron 0.20 TCGA-CA-6717-01 20 13145505 13145505 C T SPTLC3 Silent p.L550L 0.22 TCGA-CA-6717-01 20 13763472 13763472 G T ESF1 Silent p.I105I 0.13 TCGA-CA-6717-01 20 14306496 14306496 G T FLRT3 Missense_Mutation p.H553N 0.06 deleterious(0.03) benign(0.188) TCGA-CA-6717-01 20 14306584 14306584 T A FLRT3 Missense_Mutation p.K523N 0.07 tolerated(0.5) benign(0.299) TCGA-CA-6717-01 20 14306878 14306878 G T FLRT3 Silent p.I425I 0.14 TCGA-CA-6717-01 20 14307053 14307053 G T FLRT3 Missense_Mutation p.T367N 0.09 tolerated(0.17) benign(0.356) TCGA-CA-6717-01 20 14307360 14307360 T C FLRT3 Missense_Mutation p.N265D 0.23 tolerated(0.29) benign(0.005) TCGA-CA-6717-01 20 14307477 14307477 T G FLRT3 Missense_Mutation p.N226H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 1433174 1433174 A C NSFL1C Missense_Mutation p.F252C 0.15 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 20 1552616 1552616 G T SIRPB1 Missense_Mutation p.F167L 0.10 tolerated(0.11) benign(0.04) TCGA-CA-6717-01 20 16030585 16030585 C T MACROD2 3'UTR 0.12 TCGA-CA-6717-01 20 16348045 16348045 C A KIF16B Nonsense_Mutation p.E1309* 0.19 TCGA-CA-6717-01 20 1638332 1638332 G T SIRPG Missense_Mutation p.P10H 0.17 tolerated(0.33) benign(0.004) TCGA-CA-6717-01 20 16407841 16407841 T G KIF16B Missense_Mutation p.N507T 0.08 deleterious(0.01) probably_damaging(0.959) TCGA-CA-6717-01 20 16478293 16478293 T A KIF16B Missense_Mutation p.S403C 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 16493483 16493483 C T KIF16B Missense_Mutation p.R145Q 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 20 16729007 16729007 G A OTOR 5'UTR 0.21 TCGA-CA-6717-01 20 16729541 16729541 G A OTOR Missense_Mutation p.D49N 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-CA-6717-01 20 16729643 16729643 G A OTOR Missense_Mutation p.A83T 0.20 deleterious(0.02) probably_damaging(0.917) TCGA-CA-6717-01 20 17208062 17208062 T C PCSK2 Silent p.L38L 0.11 TCGA-CA-6717-01 20 17475599 17475599 C A BFSP1 Missense_Mutation p.R373I 0.10 deleterious(0.05) possibly_damaging(0.878) TCGA-CA-6717-01 20 17581486 17581486 T C DSTN Missense_Mutation p.V36A 0.23 deleterious(0) probably_damaging(0.92) TCGA-CA-6717-01 20 17640314 17640314 T C RRBP1 Intron 0.15 TCGA-CA-6717-01 20 17933344 17933344 C T SNX5 Missense_Mutation p.A134T 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 20 18162401 18162401 T G CSRP2BP Missense_Mutation p.F573L 0.29 deleterious(0.01) benign(0.021) TCGA-CA-6717-01 20 18424064 18424064 C T DZANK1 Missense_Mutation p.R225H 0.13 tolerated(0.41) benign(0.048) TCGA-CA-6717-01 20 18790666 18790666 G T C20orf78 Silent p.S70S 0.08 TCGA-CA-6717-01 20 1903080 1903080 C T SIRPA Silent p.N292N 0.09 TCGA-CA-6717-01 20 1905506 1905506 G A SIRPA Missense_Mutation p.R395Q 0.10 deleterious(0.01) possibly_damaging(0.885) TCGA-CA-6717-01 20 19956352 19956352 G T RIN2 Missense_Mutation p.M610I 0.16 tolerated(0.13) benign(0.087) TCGA-CA-6717-01 20 19998665 19998665 G A NAA20 Intron 0.15 TCGA-CA-6717-01 20 20020386 20020386 A G CRNKL1 Missense_Mutation p.F632S 0.20 deleterious(0.02) possibly_damaging(0.616) TCGA-CA-6717-01 20 20030019 20030019 G A CRNKL1 Silent p.Y248Y 0.17 TCGA-CA-6717-01 20 20037347 20037347 G A C20orf26 Missense_Mutation p.R17Q 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 20340926 20340926 C T C20orf26 Missense_Mutation p.P1196S 0.26 tolerated(0.07) possibly_damaging(0.553) TCGA-CA-6717-01 20 20453518 20453518 T C RALGAPA2 Missense_Mutation p.N1817S 0.12 tolerated(0.12) probably_damaging(0.972) TCGA-CA-6717-01 20 21213372 21213372 G A PLK1S1 Intron 0.09 TCGA-CA-6717-01 20 21367631 21367631 G A XRN2 Missense_Mutation p.R925H 0.08 deleterious_low_confidence(0.02) benign(0.211) TCGA-CA-6717-01 20 21687515 21687515 G A PAX1 Silent p.S242S 0.11 TCGA-CA-6717-01 20 23017048 23017048 C T SSTR4 Missense_Mutation p.L310F 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 23065270 23065270 C T CD93 Silent p.S520S 0.17 TCGA-CA-6717-01 20 23334796 23334796 A C NXT1 Missense_Mutation p.M40L 0.24 tolerated(1) benign(0.001) TCGA-CA-6717-01 20 23345333 23345333 C T GZF1 Missense_Mutation p.R105W 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 23345658 23345658 A C GZF1 Missense_Mutation p.K213T 0.24 deleterious(0.03) probably_damaging(0.98) TCGA-CA-6717-01 20 23421019 23421019 A C CSTL1 Missense_Mutation p.K39Q 0.08 tolerated(0.34) benign(0.045) TCGA-CA-6717-01 20 23546658 23546658 C A CST9L Missense_Mutation p.D103Y 0.17 deleterious(0) possibly_damaging(0.886) TCGA-CA-6717-01 20 23667749 23667749 G T CST4 Missense_Mutation p.F106L 0.12 tolerated(0.09) benign(0.263) TCGA-CA-6717-01 20 23729743 23729743 G T CST1 Missense_Mutation p.F84L 0.12 tolerated(0.16) probably_damaging(0.97) TCGA-CA-6717-01 20 238379 238379 C T DEFB132 5'UTR 0.09 TCGA-CA-6717-01 20 2398026 2398026 C T TGM6 Silent p.I495I 0.16 TCGA-CA-6717-01 20 2442561 2442561 T C SNRPB Intron 0.10 TCGA-CA-6717-01 20 24646084 24646084 T G SYNDIG1 Missense_Mutation p.Y241D 0.09 deleterious(0) probably_damaging(0.93) TCGA-CA-6717-01 20 2465151 2465151 T C ZNF343 Silent p.K152K 0.17 TCGA-CA-6717-01 20 25228803 25228803 T C PYGB 5'UTR 0.44 TCGA-CA-6717-01 20 2637601 2637601 T C NOP56 Intron 0.15 TCGA-CA-6717-01 20 2638641 2638641 A C NOP56 Missense_Mutation p.M496L 0.10 tolerated_low_confidence(0.45) benign(0) TCGA-CA-6717-01 20 2638796 2638796 T C NOP56 Silent p.P547P 0.11 TCGA-CA-6717-01 20 29992782 29992782 C A DEFB121 Missense_Mutation p.K55N 0.08 deleterious(0) possibly_damaging(0.788) TCGA-CA-6717-01 20 30065655 30065655 C T REM1 Missense_Mutation p.T122M 0.42 tolerated(0.51) benign(0.038) TCGA-CA-6717-01 20 3018834 3018834 C A PTPRA 3'UTR 0.24 TCGA-CA-6717-01 20 30408032 30408032 A C MYLK2 Missense_Mutation p.K52N 0.10 deleterious_low_confidence(0.01) benign(0.147) TCGA-CA-6717-01 20 30510799 30510799 A G TTLL9 Missense_Mutation p.I203V 0.11 tolerated(0.3) benign(0.002) TCGA-CA-6717-01 20 30556286 30556286 T A XKR7 Missense_Mutation p.V103D 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 30681740 30681740 C T HCK Silent p.V389V 0.23 TCGA-CA-6717-01 20 30686851 30686851 T G HCK Missense_Mutation p.F431V 0.23 deleterious(0) possibly_damaging(0.505) TCGA-CA-6717-01 20 3102943 3102943 C T UBOX5 Silent p.A114A 0.26 TCGA-CA-6717-01 20 310325 310325 T G SOX12 3'UTR 0.25 TCGA-CA-6717-01 20 31372593 31372593 T C DNMT3B Silent p.D78D 0.21 TCGA-CA-6717-01 20 31379409 31379409 C A DNMT3B Silent p.V272V 0.09 TCGA-CA-6717-01 20 31413839 31413839 G A MAPRE1 Missense_Mutation p.E36K 0.12 deleterious(0.02) possibly_damaging(0.853) TCGA-CA-6717-01 20 31436503 31436503 G A MAPRE1 Missense_Mutation p.G259E 0.17 tolerated(0.59) unknown(0) TCGA-CA-6717-01 20 31466562 31466562 G A EFCAB8 Missense_Mutation p.R127Q 0.23 TCGA-CA-6717-01 20 31600667 31600667 G A BPIFB2 Missense_Mutation p.G88R 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 31623433 31623433 G A BPIFB6 Missense_Mutation p.D178N 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 20 31958423 31958423 C T CDK5RAP1 Missense_Mutation p.S425N 0.17 deleterious(0) possibly_damaging(0.777) TCGA-CA-6717-01 20 32232557 32232557 G T CBFA2T2 3'UTR 0.28 TCGA-CA-6717-01 20 3268302 3268302 G A C20orf194 Missense_Mutation p.T821I 0.09 tolerated(0.34) benign(0.002) TCGA-CA-6717-01 20 32684576 32684576 C A EIF2S2 Missense_Mutation p.K190N 0.13 tolerated(0.22) probably_damaging(0.999) TCGA-CA-6717-01 20 33330320 33330320 G A NCOA6 Missense_Mutation p.S1247F 0.09 probably_damaging(0.998) TCGA-CA-6717-01 20 3340165 3340165 C T C20orf194 Missense_Mutation p.D230N 0.15 tolerated(0.07) benign(0.04) TCGA-CA-6717-01 20 33500978 33500978 C A ACSS2 Missense_Mutation p.L152I 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 3356928 3356928 G A C20orf194 Missense_Mutation p.S102L 0.09 tolerated(0.32) benign(0.033) TCGA-CA-6717-01 20 33574983 33574983 A G MYH7B Missense_Mutation p.D389G 0.22 possibly_damaging(0.733) TCGA-CA-6717-01 20 34214059 34214059 A G CPNE1 3'UTR 0.20 TCGA-CA-6717-01 20 34214084 34214084 G A CPNE1 3'UTR 0.25 TCGA-CA-6717-01 20 34242570 34242570 C T RBM12 Silent p.P225P 0.17 TCGA-CA-6717-01 20 34293195 34293195 A G RBM39 Silent p.N455N 0.13 TCGA-CA-6717-01 20 34501205 34501205 A G PHF20 Silent p.K532K 0.06 TCGA-CA-6717-01 20 34797641 34797641 G A EPB41L1 Missense_Mutation p.E634K 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-CA-6717-01 20 34800256 34800256 G T EPB41L1 Missense_Mutation p.E714D 0.19 tolerated(0.36) benign(0.004) TCGA-CA-6717-01 20 35668670 35668670 A C RBL1 Missense_Mutation p.F597V 0.09 tolerated(0.09) benign(0.04) TCGA-CA-6717-01 20 35672548 35672548 C T RBL1 Missense_Mutation p.D571N 0.23 tolerated(0.19) benign(0.061) TCGA-CA-6717-01 20 35696493 35696493 A G RBL1 Silent p.F129F 0.21 TCGA-CA-6717-01 20 35749312 35749312 G T MROH8 Missense_Mutation p.L729I 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 35854148 35854148 C T RPN2 Silent p.F414F 0.15 TCGA-CA-6717-01 20 36407639 36407639 G T CTNNBL1 Missense_Mutation p.E311D 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 20 3649980 3649980 C A ADAM33 Missense_Mutation p.E790D 0.12 tolerated(0.54) benign(0.037) TCGA-CA-6717-01 20 36640289 36640289 C A TTI1 Missense_Mutation p.D644Y 0.10 deleterious(0) probably_damaging(0.944) TCGA-CA-6717-01 20 3674972 3674972 C T SIGLEC1 Missense_Mutation p.R1051H 0.10 deleterious(0.03) possibly_damaging(0.458) TCGA-CA-6717-01 20 3721480 3721480 C T HSPA12B Missense_Mutation p.S21F 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-CA-6717-01 20 3722990 3722990 C T HSPA12B Silent p.F67F 0.17 TCGA-CA-6717-01 20 3730653 3730653 C T HSPA12B Silent p.F360F 0.15 TCGA-CA-6717-01 20 37529312 37529312 T C PPP1R16B Missense_Mutation p.C186R 0.13 deleterious(0.01) possibly_damaging(0.756) TCGA-CA-6717-01 20 37650497 37650497 T C DHX35 Silent p.C504C 0.08 TCGA-CA-6717-01 20 37662910 37662910 G T DHX35 Nonsense_Mutation p.E673* 0.18 TCGA-CA-6717-01 20 3914788 3914788 T C RNF24 Silent p.L144L 0.21 TCGA-CA-6717-01 20 39706225 39706225 C A TOP1 Silent p.R95R 0.13 TCGA-CA-6717-01 20 39729957 39729957 T C TOP1 Silent p.I424I 0.22 TCGA-CA-6717-01 20 39833021 39833021 A C ZHX3 Missense_Mutation p.I179S 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 39983480 39983480 G T LPIN3 Missense_Mutation p.K547N 0.12 tolerated(0.48) benign(0.002) TCGA-CA-6717-01 20 40113156 40113156 A C CHD6 Missense_Mutation p.I698S 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 40727111 40727111 C T PTPRT Missense_Mutation p.D1266N 0.18 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 20 41420102 41420102 A C PTPRT Silent p.S73S 0.32 TCGA-CA-6717-01 20 42088438 42088438 G T SRSF6 Missense_Mutation p.R95I 0.12 deleterious(0.01) possibly_damaging(0.806) TCGA-CA-6717-01 20 42089576 42089576 C T SRSF6 Missense_Mutation p.S303L 0.10 deleterious_low_confidence(0) benign(0.194) TCGA-CA-6717-01 20 42908071 42908071 C T GDAP1L1 3'UTR 0.38 TCGA-CA-6717-01 20 43118212 43118212 C A TTPAL 3'UTR 0.44 TCGA-CA-6717-01 20 43530302 43530302 G T YWHAB Missense_Mutation p.R43I 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-CA-6717-01 20 43738436 43738436 C A WFDC5 3'UTR 0.10 TCGA-CA-6717-01 20 43933293 43933293 A T MATN4 Missense_Mutation p.V73D 0.14 probably_damaging(0.994) TCGA-CA-6717-01 20 44004138 44004138 G A TP53TG5 Silent p.I103I 0.26 TCGA-CA-6717-01 20 44144191 44144191 G A SPINT3 Nonsense_Mutation p.R20* 0.10 TCGA-CA-6717-01 20 44404062 44404062 C T WFDC3 Missense_Mutation p.E225K 0.26 tolerated_low_confidence(0.09) benign(0.164) TCGA-CA-6717-01 20 44469369 44469369 G A SNX21 Missense_Mutation p.R180Q 0.20 tolerated(0.45) possibly_damaging(0.88) TCGA-CA-6717-01 20 44511466 44511466 T C ZSWIM1 Silent p.L79L 0.14 TCGA-CA-6717-01 20 44579124 44579124 C A ZNF335 Missense_Mutation p.E1100D 0.11 tolerated(0.06) probably_damaging(0.996) TCGA-CA-6717-01 20 44828153 44828153 G A CDH22 Silent p.I444I 0.17 TCGA-CA-6717-01 20 44856227 44856227 T C CDH22 Missense_Mutation p.D197G 0.16 deleterious(0) possibly_damaging(0.837) TCGA-CA-6717-01 20 44979435 44979435 G A SLC35C2 Missense_Mutation p.S311F 0.23 deleterious(0) benign(0.316) TCGA-CA-6717-01 20 45131255 45131255 T A ZNF334 Missense_Mutation p.E241D 0.26 tolerated(0.2) benign(0.061) TCGA-CA-6717-01 20 45131589 45131589 C A ZNF334 Missense_Mutation p.R130I 0.15 tolerated(0.24) benign(0.001) TCGA-CA-6717-01 20 45140736 45140736 T G ZNF334 Missense_Mutation p.K2N 0.28 deleterious(0) benign(0.403) TCGA-CA-6717-01 20 45169889 45169889 C T OCSTAMP 3'UTR 0.23 TCGA-CA-6717-01 20 45221072 45221072 G T SLC13A3 Silent p.I297I 0.17 TCGA-CA-6717-01 20 45237646 45237646 G A SLC13A3 Intron 0.09 TCGA-CA-6717-01 20 45237691 45237691 C A SLC13A3 Intron 0.21 TCGA-CA-6717-01 20 45607218 45607218 C T EYA2 Intron 0.12 TCGA-CA-6717-01 20 45801433 45801433 C T EYA2 Silent p.G372G 0.15 TCGA-CA-6717-01 20 46252693 46252693 A G NCOA3 Missense_Mutation p.E41G 0.15 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 20 46276016 46276016 A G NCOA3 Missense_Mutation p.Q1151R 0.14 tolerated(0.42) possibly_damaging(0.772) TCGA-CA-6717-01 20 46386201 46386201 C T SULF2 5'UTR 0.25 TCGA-CA-6717-01 20 4681918 4681918 T C PRNP 3'UTR 0.13 TCGA-CA-6717-01 20 4706944 4706944 A C PRND 3'UTR 0.18 TCGA-CA-6717-01 20 4707632 4707632 C A PRND 3'UTR 0.19 TCGA-CA-6717-01 20 4708139 4708139 C T PRND 3'UTR 0.10 TCGA-CA-6717-01 20 47614982 47614982 G T ARFGEF2 Missense_Mutation p.M1124I 0.09 deleterious(0.04) probably_damaging(0.95) TCGA-CA-6717-01 20 4771147 4771147 G A RASSF2 Nonsense_Mutation p.R163* 0.11 TCGA-CA-6717-01 20 4781676 4781676 T C RASSF2 Translation_Start_Site p.M1? 0.09 deleterious(0) probably_damaging(0.914) TCGA-CA-6717-01 20 47841523 47841523 G T DDX27 Nonsense_Mutation p.G201* 0.11 TCGA-CA-6717-01 20 47864708 47864708 A C ZNFX1 Missense_Mutation p.V1618G 0.13 tolerated(0.23) probably_damaging(0.948) TCGA-CA-6717-01 20 48164391 48164391 C T PTGIS Missense_Mutation p.A122T 0.16 tolerated(0.2) benign(0.008) TCGA-CA-6717-01 20 48253964 48253964 G C B4GALT5 Silent p.G311G 0.10 TCGA-CA-6717-01 20 48260080 48260080 A G B4GALT5 Missense_Mutation p.C158R 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 20 4855282 4855282 C T SLC23A2 Silent p.P295P 0.22 TCGA-CA-6717-01 20 49177978 49177978 G T PTPN1 Missense_Mutation p.D48Y 0.28 deleterious(0.02) possibly_damaging(0.874) TCGA-CA-6717-01 20 49209615 49209615 G A FAM65C Silent p.S773S 0.16 TCGA-CA-6717-01 20 50241847 50241847 T C ATP9A Missense_Mutation p.T634A 0.12 tolerated(1) benign(0.001) TCGA-CA-6717-01 20 50407032 50407032 C A SALL4 Missense_Mutation p.D664Y 0.20 deleterious(0) possibly_damaging(0.871) TCGA-CA-6717-01 20 50407864 50407864 G A SALL4 Silent p.Y386Y 0.21 TCGA-CA-6717-01 20 51870938 51870938 C T TSHZ2 Missense_Mutation p.S314L 0.15 deleterious(0) possibly_damaging(0.815) TCGA-CA-6717-01 20 51871354 51871354 T C TSHZ2 Missense_Mutation p.C453R 0.17 tolerated(0.36) benign(0.001) TCGA-CA-6717-01 20 51871490 51871490 A G TSHZ2 Missense_Mutation p.Y498C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 52188272 52188272 T C ZNF217 3'UTR 0.08 TCGA-CA-6717-01 20 52781031 52781031 C A CYP24A1 Missense_Mutation p.W268C 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 52830917 52830917 G A PFDN4 Missense_Mutation p.E18K 0.10 tolerated(0.06) benign(0.051) TCGA-CA-6717-01 20 52835723 52835723 A C PFDN4 3'UTR 0.13 TCGA-CA-6717-01 20 54578942 54578942 C T CBLN4 Missense_Mutation p.D96N 0.23 deleterious(0.01) benign(0.146) TCGA-CA-6717-01 20 54948571 54948571 C T AURKA Silent p.S249S 0.24 TCGA-CA-6717-01 20 55027303 55027303 G A CASS4 Silent p.S357S 0.08 TCGA-CA-6717-01 20 55027397 55027397 A C CASS4 Missense_Mutation p.T389P 0.14 tolerated(0.31) benign(0.001) TCGA-CA-6717-01 20 55028060 55028060 A G CASS4 Missense_Mutation p.K610E 0.18 tolerated(0.06) benign(0.049) TCGA-CA-6717-01 20 55111295 55111295 C T FAM209B Missense_Mutation p.S106F 0.14 tolerated(0.06) benign(0.319) TCGA-CA-6717-01 20 55913340 55913340 A G SPO11 Silent p.G251G 0.09 TCGA-CA-6717-01 20 55917885 55917885 T C SPO11 Missense_Mutation p.W354R 0.09 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 20 55982660 55982660 G A RBM38 Missense_Mutation p.A160T 0.11 tolerated(0.62) benign(0) TCGA-CA-6717-01 20 56094426 56094426 T G CTCFL Missense_Mutation p.K254N 0.19 deleterious(0.03) benign(0.261) TCGA-CA-6717-01 20 57015970 57015970 T C VAPB Missense_Mutation p.V135A 0.16 tolerated(0.25) benign(0.004) TCGA-CA-6717-01 20 57415103 57415103 C T RP4-806M20.3 5'Flank 0.20 TCGA-CA-6717-01 20 57571777 57571777 T G CTSZ Missense_Mutation p.N240H 0.19 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 20 57766215 57766215 C A ZNF831 Silent p.G47G 0.27 TCGA-CA-6717-01 20 57768746 57768746 C A ZNF831 Missense_Mutation p.S891Y 0.20 deleterious(0.04) possibly_damaging(0.758) TCGA-CA-6717-01 20 57829419 57829419 G T ZNF831 Missense_Mutation p.R1552I 0.21 deleterious(0.04) benign(0.35) TCGA-CA-6717-01 20 57876575 57876575 G A EDN3 Missense_Mutation p.E55K 0.15 tolerated(0.27) benign(0.061) TCGA-CA-6717-01 20 58348487 58348487 C A PHACTR3 Missense_Mutation p.A302D 0.31 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 58420259 58420259 G T PHACTR3 Nonsense_Mutation p.E535* 0.06 TCGA-CA-6717-01 20 58420274 58420274 A C PHACTR3 Missense_Mutation p.K540Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 58440484 58440484 C A SYCP2 Nonsense_Mutation p.E1492* 0.14 TCGA-CA-6717-01 20 58461868 58461868 C A SYCP2 Nonsense_Mutation p.E796* 0.10 TCGA-CA-6717-01 20 58490555 58490555 C A SYCP2 Silent p.R188R 0.19 TCGA-CA-6717-01 20 58495538 58495538 A C SYCP2 Missense_Mutation p.L58R 0.08 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 20 58496498 58496498 T G SYCP2 Missense_Mutation p.K12T 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 58521056 58521056 A G FAM217B 3'UTR 0.11 TCGA-CA-6717-01 20 58521576 58521576 G A FAM217B 3'UTR 0.10 TCGA-CA-6717-01 20 58562512 58562512 A C CDH26 Missense_Mutation p.K281T 0.21 tolerated(0.08) benign(0.031) TCGA-CA-6717-01 20 5897513 5897513 G A CHGB Silent p.S46S 0.17 TCGA-CA-6717-01 20 5902998 5902998 G A CHGB Missense_Mutation p.D70N 0.12 deleterious(0.05) benign(0.109) TCGA-CA-6717-01 20 5905627 5905627 C A CHGB Missense_Mutation p.L656I 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 20 5953780 5953780 C T MCM8 Missense_Mutation p.R445W 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 5963807 5963807 T C MCM8 Silent p.L577L 0.11 TCGA-CA-6717-01 20 5965590 5965590 T G MCM8 Missense_Mutation p.S633A 0.29 tolerated(0.83) benign(0.007) TCGA-CA-6717-01 20 60448787 60448787 C T CDH4 Missense_Mutation p.T294I 0.31 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 20 61167690 61167690 A C C20orf166 Missense_Mutation p.N54H 0.14 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-CA-6717-01 20 61296456 61296456 C A SLCO4A1 Intron 0.12 TCGA-CA-6717-01 20 61527623 61527623 G A DIDO1 Missense_Mutation p.R726C 0.11 probably_damaging(1) TCGA-CA-6717-01 20 61594937 61594937 G A SLC17A9 Missense_Mutation p.A243T 0.15 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 20 61845263 61845263 C A YTHDF1 Missense_Mutation p.V29F 0.20 tolerated(0.09) possibly_damaging(0.898) TCGA-CA-6717-01 20 61870900 61870900 G A BIRC7 Silent p.Q280Q 0.12 TCGA-CA-6717-01 20 61870941 61870941 G A BIRC7 Missense_Mutation p.R294H 0.31 deleterious(0.03) possibly_damaging(0.854) TCGA-CA-6717-01 20 61929321 61929321 G T COL20A1 Nonsense_Mutation p.E48* 0.20 TCGA-CA-6717-01 20 62076678 62076678 C T KCNQ2 Missense_Mutation p.V143M 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 20 62294197 62294197 A T RTEL1 Nonsense_Mutation p.K189* 0.12 TCGA-CA-6717-01 20 62320953 62320953 G T RTEL1 Missense_Mutation p.K683N 0.28 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 62324611 62324611 G T RTEL1 Silent p.R1013R 0.14 TCGA-CA-6717-01 20 62421523 62421523 G A ZBTB46 Silent p.Y196Y 0.18 TCGA-CA-6717-01 20 62507195 62507195 G A TPD52L2 Missense_Mutation p.G114E 0.26 tolerated_low_confidence(0.18) benign(0.042) TCGA-CA-6717-01 20 62729309 62729309 G T OPRL1 Missense_Mutation p.D130Y 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 62839648 62839648 T C MYT1 Missense_Mutation p.S367P 0.22 possibly_damaging(0.772) TCGA-CA-6717-01 20 62859340 62859340 C A MYT1 Intron 0.11 TCGA-CA-6717-01 20 62891427 62891427 G A PCMTD2 Missense_Mutation p.D37N 0.09 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 20 62899265 62899265 C A PCMTD2 Missense_Mutation p.P203H 0.15 tolerated(0.06) benign(0.229) TCGA-CA-6717-01 20 746219 746219 C T SLC52A3 Missense_Mutation p.S67N 0.25 deleterious(0) benign(0.007) TCGA-CA-6717-01 20 858949 858949 C T ANGPT4 Missense_Mutation p.E359K 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 20 9388665 9388665 C T PLCB4 Silent p.Y571Y 0.08 TCGA-CA-6717-01 20 944697 944697 G A RSPO4 Missense_Mutation p.S159L 0.26 tolerated(0.5) benign(0.004) TCGA-CA-6717-01 20 9538383 9538383 T C PAK7 Splice_Site p.X539_splice 0.16 TCGA-CA-6717-01 21 10862823 10862823 C A IGHV1OR21-1 Missense_Mutation p.S40Y 0.10 deleterious(0) probably_damaging(0.977) TCGA-CA-6717-01 21 10910355 10910355 G A TPTE Silent p.F467F 0.06 TCGA-CA-6717-01 21 10914362 10914362 C T TPTE Splice_Site p.X452_splice 0.08 TCGA-CA-6717-01 21 10951306 10951306 A G TPTE Missense_Mutation p.F136L 0.06 deleterious(0.01) probably_damaging(0.976) TCGA-CA-6717-01 21 10973776 10973776 A G TPTE Intron 0.09 TCGA-CA-6717-01 21 10996106 10996106 C T TPTE RNA 0.12 TCGA-CA-6717-01 21 11020917 11020917 C T BAGE2 Intron 0.10 TCGA-CA-6717-01 21 15517052 15517052 T C LIPI Missense_Mutation p.N417S 0.08 tolerated(0.28) benign(0.076) TCGA-CA-6717-01 21 15561542 15561542 C T LIPI Missense_Mutation p.G103E 0.07 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 21 15561584 15561584 A G LIPI Missense_Mutation p.V89A 0.07 tolerated(0.75) benign(0.017) TCGA-CA-6717-01 21 15954461 15954461 G T SAMSN1 Nonsense_Mutation p.S86* 0.23 TCGA-CA-6717-01 21 16337908 16337908 G T NRIP1 Missense_Mutation p.P869Q 0.11 tolerated(0.45) possibly_damaging(0.761) TCGA-CA-6717-01 21 17191079 17191079 G T USP25 Missense_Mutation p.D332Y 0.10 deleterious(0) possibly_damaging(0.876) TCGA-CA-6717-01 21 17443577 17443577 G T LINC00478 RNA 0.21 TCGA-CA-6717-01 21 17603412 17603412 A C LINC00478 RNA 0.25 TCGA-CA-6717-01 21 18981414 18981414 G A BTG3 Nonsense_Mutation p.R17* 0.07 TCGA-CA-6717-01 21 19165856 19165856 G T C21orf91 Missense_Mutation p.S257Y 0.09 deleterious(0) probably_damaging(0.951) TCGA-CA-6717-01 21 22664475 22664475 A C NCAM2 Missense_Mutation p.K178T 0.16 deleterious(0.04) probably_damaging(1) TCGA-CA-6717-01 21 27113896 27113896 G T GABPA 5'UTR 0.22 TCGA-CA-6717-01 21 28212840 28212840 G T ADAMTS1 Missense_Mutation p.P474T 0.11 deleterious(0) possibly_damaging(0.794) TCGA-CA-6717-01 21 28306793 28306794 - T ADAMTS5 Frame_Shift_Ins p.Y561Ifs*35 0.23 TCGA-CA-6717-01 21 30325699 30325699 C A LTN1 Splice_Site p.X1073_splice 0.12 TCGA-CA-6717-01 21 30426459 30426459 A C USP16 Missense_Mutation p.K808T 0.26 deleterious(0) possibly_damaging(0.87) TCGA-CA-6717-01 21 30698864 30698864 G A BACH1 Missense_Mutation p.R240H 0.24 tolerated(0.69) benign(0.01) TCGA-CA-6717-01 21 30699435 30699435 G T BACH1 Missense_Mutation p.Q430H 0.27 tolerated(0.05) probably_damaging(0.968) TCGA-CA-6717-01 21 30927397 30927397 T C GRIK1 Silent p.S861S 0.14 TCGA-CA-6717-01 21 31062152 31062152 T C GRIK1 Missense_Mutation p.Y147C 0.13 deleterious(0.03) possibly_damaging(0.801) TCGA-CA-6717-01 21 31661731 31661731 C T KRTAP25-1 Silent p.P26P 0.22 TCGA-CA-6717-01 21 31709701 31709701 C T KRTAP27-1 Missense_Mutation p.E96K 0.18 deleterious(0.04) possibly_damaging(0.747) TCGA-CA-6717-01 21 31769009 31769009 G T KRTAP13-1 3'UTR 0.25 TCGA-CA-6717-01 21 31812891 31812891 C A KRTAP15-1 Silent p.I82I 0.10 TCGA-CA-6717-01 21 31859641 31859641 A G KRTAP19-2 Silent p.C9C 0.10 TCGA-CA-6717-01 21 31988934 31988934 G A KRTAP20-1 Missense_Mutation p.G54D 0.10 unknown(0) TCGA-CA-6717-01 21 32410539 32410539 G A KRTAP19-8 3'UTR 0.28 TCGA-CA-6717-01 21 32554855 32554855 C T TIAM1 Missense_Mutation p.V924M 0.15 deleterious(0) probably_damaging(0.935) TCGA-CA-6717-01 21 32639250 32639250 A C TIAM1 Missense_Mutation p.F13L 0.25 tolerated_low_confidence(0.48) benign(0.001) TCGA-CA-6717-01 21 33036139 33036139 A C SOD1 Missense_Mutation p.K37Q 0.17 tolerated(0.08) benign(0.001) TCGA-CA-6717-01 21 33063261 33063261 G A SCAF4 Silent p.A578A 0.10 TCGA-CA-6717-01 21 33077745 33077745 G T SCAF4 Missense_Mutation p.F50L 0.16 probably_damaging(0.952) TCGA-CA-6717-01 21 33696827 33696827 T C URB1 Missense_Mutation p.K1736R 0.18 tolerated(0.31) benign(0.082) TCGA-CA-6717-01 21 33705717 33705717 C T URB1 Silent p.E1623E 0.16 TCGA-CA-6717-01 21 33709731 33709731 C T URB1 Missense_Mutation p.A1535T 0.21 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 21 33717809 33717809 C T URB1 Missense_Mutation p.S1315N 0.22 tolerated(0.06) benign(0.045) TCGA-CA-6717-01 21 33840097 33840097 G A EVA1C Missense_Mutation p.G192D 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 21 34003858 34003858 C T SYNJ1 Missense_Mutation p.R1429Q 0.25 deleterious_low_confidence(0.02) benign(0.178) TCGA-CA-6717-01 21 34004057 34004057 G A SYNJ1 Missense_Mutation p.P1363S 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.475) TCGA-CA-6717-01 21 34045731 34045731 G A SYNJ1 Missense_Mutation p.R588C 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 21 34072237 34072237 A G SYNJ1 Silent p.F169F 0.16 TCGA-CA-6717-01 21 34109597 34109597 G A PAXBP1 Silent p.I868I 0.10 TCGA-CA-6717-01 21 34401491 34401491 A C OLIG2 3'UTR 0.19 TCGA-CA-6717-01 21 34444234 34444234 T C OLIG1 3'UTR 0.12 TCGA-CA-6717-01 21 34655474 34655474 C T IL10RB Nonsense_Mutation p.R192* 0.24 TCGA-CA-6717-01 21 34715876 34715876 T G IFNAR1 Missense_Mutation p.I189M 0.13 deleterious(0.05) probably_damaging(0.99) TCGA-CA-6717-01 21 34861073 34861073 C A DNAJC28 Nonsense_Mutation p.E210* 0.08 TCGA-CA-6717-01 21 34861473 34861473 C A DNAJC28 Missense_Mutation p.K76N 0.10 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 21 34876328 34876328 T C GART 3'UTR 0.26 TCGA-CA-6717-01 21 34876521 34876521 A G GART Silent p.H981H 0.10 TCGA-CA-6717-01 21 34922159 34922159 G A SON Missense_Mutation p.A208T 0.10 possibly_damaging(0.483) TCGA-CA-6717-01 21 34926158 34926158 A G SON Missense_Mutation p.I1541V 0.10 benign(0.031) TCGA-CA-6717-01 21 34948145 34948145 A C SON Missense_Mutation p.E2389D 0.10 unknown(0) TCGA-CA-6717-01 21 35169700 35169700 A G ITSN1 Missense_Mutation p.D657G 0.26 tolerated(0.1) benign(0.009) TCGA-CA-6717-01 21 35195812 35195812 A G ITSN1 Missense_Mutation p.Y1013C 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 21 35471842 35471842 A C SLC5A3 3'UTR 0.26 TCGA-CA-6717-01 21 35472181 35472181 G A SLC5A3 3'UTR 0.19 TCGA-CA-6717-01 21 35474614 35474614 G T SLC5A3 3'UTR 0.18 TCGA-CA-6717-01 21 35474706 35474706 A C SLC5A3 3'UTR 0.12 TCGA-CA-6717-01 21 35478437 35478437 G T SLC5A3 3'UTR 0.15 TCGA-CA-6717-01 21 35478456 35478456 G T SLC5A3 3'UTR 0.14 TCGA-CA-6717-01 21 35743124 35743124 C T KCNE2 Missense_Mutation p.A116V 0.22 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-CA-6717-01 21 35743272 35743272 T C KCNE2 3'UTR 0.19 TCGA-CA-6717-01 21 35821410 35821410 A G KCNE1 3'UTR 0.18 TCGA-CA-6717-01 21 37665828 37665828 G T DOPEY2 Nonsense_Mutation p.E2286* 0.08 TCGA-CA-6717-01 21 37741331 37741331 G T MORC3 Missense_Mutation p.K555N 0.19 deleterious(0.04) probably_damaging(0.99) TCGA-CA-6717-01 21 38126622 38126622 G A HLCS Silent p.G702G 0.26 TCGA-CA-6717-01 21 38132083 38132083 G A HLCS Silent p.I580I 0.11 TCGA-CA-6717-01 21 38269349 38269349 C A HLCS Missense_Mutation p.R421I 0.09 deleterious(0) benign(0.014) TCGA-CA-6717-01 21 38444761 38444761 G T PIGP Missense_Mutation p.L43I 0.20 deleterious(0.05) benign(0.386) TCGA-CA-6717-01 21 38460143 38460143 A C TTC3 Missense_Mutation p.Y52S 0.13 tolerated(0.31) benign(0.052) TCGA-CA-6717-01 21 38460524 38460524 T C TTC3 Silent p.S72S 0.10 TCGA-CA-6717-01 21 38463650 38463650 A C TTC3 Missense_Mutation p.I180L 0.10 tolerated(0.18) benign(0.049) TCGA-CA-6717-01 21 38467695 38467695 G T TTC3 Nonsense_Mutation p.E245* 0.19 TCGA-CA-6717-01 21 38524327 38524327 A C TTC3 Missense_Mutation p.K804T 0.08 tolerated(0.07) possibly_damaging(0.623) TCGA-CA-6717-01 21 38525502 38525502 T A TTC3 Missense_Mutation p.F889I 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 21 38538247 38538247 C A TTC3 Missense_Mutation p.S1244Y 0.26 tolerated(0.16) benign(0.169) TCGA-CA-6717-01 21 39086592 39086592 A G KCNJ6 Missense_Mutation p.W290R 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 21 39671680 39671680 C T KCNJ15 Missense_Mutation p.A166V 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 21 39673092 39673092 C A KCNJ15 3'UTR 0.31 TCGA-CA-6717-01 21 39673172 39673172 C T KCNJ15 3'UTR 0.24 TCGA-CA-6717-01 21 40768917 40768917 G A WRB 3'UTR 0.20 TCGA-CA-6717-01 21 40834408 40834408 G T SH3BGR Missense_Mutation p.E114D 0.20 deleterious(0.01) benign(0.376) TCGA-CA-6717-01 21 40981594 40981594 T C C21orf88 Splice_Site p.X24_splice 0.15 TCGA-CA-6717-01 21 41033747 41033747 A C B3GALT5 3'UTR 0.09 TCGA-CA-6717-01 21 41385254 41385254 G A DSCAM Missense_Mutation p.P1916S 0.15 tolerated_low_confidence(0.35) benign(0.001) TCGA-CA-6717-01 21 41414453 41414453 G A DSCAM Missense_Mutation p.S1844L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 21 41455913 41455913 G T DSCAM Missense_Mutation p.L1385I 0.13 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 21 41684095 41684095 G T DSCAM Missense_Mutation p.L659I 0.16 tolerated(0.09) possibly_damaging(0.516) TCGA-CA-6717-01 21 43161824 43161824 A C RIPK4 Missense_Mutation p.F510C 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6717-01 21 43325943 43325943 G T C2CD2 Missense_Mutation p.S441Y 0.25 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 21 43783379 43783379 C T TFF1 Missense_Mutation p.D75N 0.11 tolerated(0.54) benign(0.003) TCGA-CA-6717-01 21 43945945 43945945 G A SLC37A1 Missense_Mutation p.R39Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 21 44185549 44185549 C T PDE9A Missense_Mutation p.S434F 0.14 deleterious(0) possibly_damaging(0.895) TCGA-CA-6717-01 21 44185559 44185559 G T PDE9A Missense_Mutation p.E437D 0.26 tolerated(0.26) benign(0.001) TCGA-CA-6717-01 21 44323505 44323505 T G NDUFV3 Missense_Mutation p.V128G 0.18 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 21 44448884 44448884 G T PKNOX1 Missense_Mutation p.K333N 0.09 deleterious(0.01) possibly_damaging(0.534) TCGA-CA-6717-01 21 44476986 44476986 C T CBS Silent p.T493T 0.20 TCGA-CA-6717-01 21 45094523 45094523 C T RRP1B Missense_Mutation p.R122C 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 21 45096650 45096650 C T RRP1B Silent p.F217F 0.13 TCGA-CA-6717-01 21 45706941 45706941 A G AIRE Missense_Mutation p.T130A 0.13 tolerated(0.62) benign(0.011) TCGA-CA-6717-01 21 45707398 45707398 A C AIRE Splice_Site p.X155_splice 0.09 TCGA-CA-6717-01 21 45784127 45784127 G A TRPM2 Missense_Mutation p.D129N 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-CA-6717-01 21 45938141 45938141 G T C21orf90 Splice_Site p.X15_splice 0.16 TCGA-CA-6717-01 21 46077997 46077997 T C KRTAP12-3 Missense_Mutation p.V34A 0.25 tolerated(0.07) benign(0.197) TCGA-CA-6717-01 21 46309259 46309259 G T ITGB2 Nonsense_Mutation p.C603* 0.27 TCGA-CA-6717-01 21 46319015 46319015 G A ITGB2 Silent p.F320F 0.10 TCGA-CA-6717-01 21 46595842 46595842 C T ADARB1 Missense_Mutation p.P76S 0.29 tolerated(0.86) probably_damaging(0.98) TCGA-CA-6717-01 21 46602548 46602548 A C ADARB1 Missense_Mutation p.K376T 0.10 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 21 46698029 46698029 C A POFUT2 Nonsense_Mutation p.E232* 0.17 TCGA-CA-6717-01 21 46888313 46888313 C A COL18A1 Missense_Mutation p.F268L 0.16 unknown(0) TCGA-CA-6717-01 21 46888424 46888424 C A COL18A1 Silent p.L305L 0.14 TCGA-CA-6717-01 21 46912608 46912608 C T COL18A1 Missense_Mutation p.P912L 0.22 benign(0.274) TCGA-CA-6717-01 21 46925287 46925287 G T COL18A1 Missense_Mutation p.G1190V 0.20 probably_damaging(1) TCGA-CA-6717-01 21 47407561 47407561 G A COL6A1 Missense_Mutation p.G266D 0.28 deleterious(0) unknown(0) TCGA-CA-6717-01 21 47532027 47532027 G A COL6A2 Missense_Mutation p.E84K 0.29 tolerated(0.19) benign(0.398) TCGA-CA-6717-01 21 47705106 47705106 C T MCM3AP Missense_Mutation p.R32Q 0.11 tolerated(0.57) benign(0.01) TCGA-CA-6717-01 21 47711349 47711349 A C YBEY Missense_Mutation p.E104D 0.12 tolerated(0.11) benign(0.033) TCGA-CA-6717-01 21 47976933 47976933 T G DIP2A Missense_Mutation p.C1194G 0.17 deleterious(0.02) benign(0.042) TCGA-CA-6717-01 22 16287254 16287254 C A POTEH Missense_Mutation p.R211M 0.09 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 22 17072195 17072195 C A CCT8L2 Nonsense_Mutation p.E416* 0.10 TCGA-CA-6717-01 22 17288788 17288788 C T XKR3 Missense_Mutation p.R59Q 0.13 tolerated(0.09) possibly_damaging(0.857) TCGA-CA-6717-01 22 17646105 17646105 G T CECR5-AS1 Intron 0.18 TCGA-CA-6717-01 22 17662347 17662347 C A CECR1 3'UTR 0.13 TCGA-CA-6717-01 22 17680485 17680485 G T CECR1 Intron 0.12 TCGA-CA-6717-01 22 17684586 17684586 A C CECR1 Missense_Mutation p.F207C 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 22 17976606 17976606 C T CECR2 Silent p.F90F 0.15 TCGA-CA-6717-01 22 18022247 18022247 C T CECR2 Silent p.L784L 0.22 TCGA-CA-6717-01 22 19167749 19167749 A C CLTCL1 Missense_Mutation p.F1636V 0.14 tolerated_low_confidence(0.21) benign(0.034) TCGA-CA-6717-01 22 19241682 19241682 C A CLTCL1 Nonsense_Mutation p.E107* 0.15 TCGA-CA-6717-01 22 19776234 19776234 A G GNB1L Nonstop_Mutation p.*328Rext*62 0.16 TCGA-CA-6717-01 22 19865662 19865662 G T TXNRD2 Missense_Mutation p.L466I 0.11 tolerated(0.13) benign(0.078) TCGA-CA-6717-01 22 20457167 20457167 A C RIMBP3 Missense_Mutation p.L1379V 0.16 tolerated(0.06) benign(0.047) TCGA-CA-6717-01 22 20460172 20460172 T C RIMBP3 Missense_Mutation p.N377S 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 22 20729864 20729864 G A USP41 Silent p.L106L 0.11 TCGA-CA-6717-01 22 21138275 21138275 A C SERPIND1 Missense_Mutation p.K302T 0.16 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 22 21138369 21138369 C T SERPIND1 Silent p.L333L 0.20 TCGA-CA-6717-01 22 21344752 21344752 C A LZTR1 Missense_Mutation p.F243L 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 22 21349195 21349195 T G LZTR1 Missense_Mutation p.F608V 0.15 deleterious(0) possibly_damaging(0.573) TCGA-CA-6717-01 22 21380909 21380909 G A P2RX6 3'UTR 0.21 TCGA-CA-6717-01 22 21385278 21385278 G A SLC7A4 Missense_Mutation p.S275L 0.12 deleterious(0) probably_damaging(0.916) TCGA-CA-6717-01 22 21742869 21742869 G T RIMBP3B Missense_Mutation p.M1574I 0.21 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 22 21998440 21998440 C A SDF2L1 Silent p.P214P 0.18 TCGA-CA-6717-01 22 22039090 22039090 A G PPIL2 Missense_Mutation p.N201S 0.11 tolerated(0.28) probably_damaging(0.971) TCGA-CA-6717-01 22 22319662 22319662 G T TOP3B Missense_Mutation p.S313Y 0.14 deleterious(0.01) benign(0.016) TCGA-CA-6717-01 22 22730798 22730798 G A IGLV5-45 Missense_Mutation p.G98E 0.08 deleterious(0.02) benign(0.423) TCGA-CA-6717-01 22 22843128 22843128 G T ZNF280B Missense_Mutation p.S199Y 0.11 tolerated(0.06) benign(0.367) TCGA-CA-6717-01 22 22843174 22843174 T G ZNF280B Missense_Mutation p.N184H 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-CA-6717-01 22 22868577 22868577 A C ZNF280A Missense_Mutation p.F460V 0.15 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 22 22868692 22868692 C A ZNF280A Missense_Mutation p.K421N 0.23 deleterious(0.04) possibly_damaging(0.456) TCGA-CA-6717-01 22 22892321 22892321 A G PRAME Silent p.I260I 0.10 TCGA-CA-6717-01 22 23063193 23063193 G T IGLV3-19 Missense_Mutation p.G16C 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 22 23063433 23063433 G T IGLV3-19 Missense_Mutation p.R47I 0.20 deleterious(0.05) benign(0.418) TCGA-CA-6717-01 22 23063491 23063491 C A IGLV3-19 Silent p.I66I 0.16 TCGA-CA-6717-01 22 23063533 23063533 C A IGLV3-19 Missense_Mutation p.F80L 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 22 23915637 23915637 C A IGLL1 Missense_Mutation p.G153V 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CA-6717-01 22 24219288 24219288 G T AP000350.10 Nonsense_Mutation p.G121* 0.21 TCGA-CA-6717-01 22 24227145 24227145 T C SLC2A11 3'UTR 0.22 TCGA-CA-6717-01 22 24434798 24434798 A C CABIN1 Missense_Mutation p.E33D 0.10 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 22 24491905 24491905 G A CABIN1 Silent p.R1266R 0.13 TCGA-CA-6717-01 22 24720264 24720264 T G SPECC1L Nonsense_Mutation p.L672* 0.17 TCGA-CA-6717-01 22 24919711 24919711 C T UPB1 Silent p.C347C 0.17 TCGA-CA-6717-01 22 25124336 25124336 A G PIWIL3 Silent p.I580I 0.15 TCGA-CA-6717-01 22 25272658 25272658 C T SGSM1 Missense_Mutation p.S524L 0.12 tolerated(0.35) benign(0.003) TCGA-CA-6717-01 22 25566824 25566824 A G KIAA1671 Missense_Mutation p.E1523G 0.23 tolerated(0.13) benign(0.077) TCGA-CA-6717-01 22 26168358 26168358 G A MYO18B Missense_Mutation p.E584K 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 22 26219478 26219478 G A MYO18B Missense_Mutation p.R843Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 22 26287337 26287337 A - MYO18B Frame_Shift_Del p.I1502Ffs*3 0.09 TCGA-CA-6717-01 22 26299756 26299756 A C MYO18B Missense_Mutation p.K1702N 0.23 deleterious(0.01) benign(0.382) TCGA-CA-6717-01 22 26317361 26317361 G A MYO18B Silent p.E1834E 0.08 TCGA-CA-6717-01 22 26747069 26747069 C T SEZ6L Missense_Mutation p.S820L 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-CA-6717-01 22 26860500 26860500 C A HPS4 Nonsense_Mutation p.E366* 0.26 TCGA-CA-6717-01 22 26884452 26884452 G A SRRD Missense_Mutation p.E203K 0.13 deleterious(0) possibly_damaging(0.783) TCGA-CA-6717-01 22 26886015 26886015 G A SRRD Silent p.G205G 0.12 TCGA-CA-6717-01 22 29025540 29025540 C A TTC28 Missense_Mutation p.K127N 0.14 deleterious(0) possibly_damaging(0.609) TCGA-CA-6717-01 22 29107986 29107986 T G CHEK2 Missense_Mutation p.K278Q 0.10 deleterious(0.01) possibly_damaging(0.807) TCGA-CA-6717-01 22 29696256 29696256 T G EWSR1 3'UTR 0.19 TCGA-CA-6717-01 22 29837433 29837433 G T RFPL1 Intron 0.18 TCGA-CA-6717-01 22 29884961 29884961 C A NEFH Silent p.I444I 0.21 TCGA-CA-6717-01 22 29886399 29886399 G A NEFH Missense_Mutation p.E924K 0.17 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 22 29886485 29886485 G A NEFH Silent p.P952P 0.23 TCGA-CA-6717-01 22 30035113 30035113 T C NF2 Missense_Mutation p.V92A 0.08 tolerated(0.28) possibly_damaging(0.489) TCGA-CA-6717-01 22 30973083 30973083 C T PES1 Missense_Mutation p.D573N 0.13 deleterious(0) possibly_damaging(0.821) TCGA-CA-6717-01 22 30983320 30983320 T G PES1 Missense_Mutation p.L107F 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-CA-6717-01 22 31529209 31529209 C T INPP5J Silent p.I405I 0.20 TCGA-CA-6717-01 22 31838014 31838014 G A EIF4ENIF1 Missense_Mutation p.S766L 0.23 deleterious(0.02) benign(0.041) TCGA-CA-6717-01 22 31974370 31974370 A C SFI1 Missense_Mutation p.M363L 0.14 tolerated(0.2) benign(0.004) TCGA-CA-6717-01 22 32099536 32099536 C T PRR14L Silent p.E2000E 0.11 TCGA-CA-6717-01 22 32109558 32109558 G T PRR14L Missense_Mutation p.L1423M 0.06 tolerated(0.78) benign(0.013) TCGA-CA-6717-01 22 32110179 32110179 T G PRR14L Missense_Mutation p.I1216L 0.19 tolerated(0.26) benign(0.131) TCGA-CA-6717-01 22 32586662 32586662 G A RFPL2 3'UTR 0.22 TCGA-CA-6717-01 22 32589114 32589114 G C RFPL2 Missense_Mutation p.P111A 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 22 32625293 32625293 G T SLC5A4 Missense_Mutation p.L390I 0.28 deleterious(0.02) possibly_damaging(0.841) TCGA-CA-6717-01 22 32754338 32754338 C T RFPL3 Missense_Mutation p.R94W 0.13 tolerated(0.19) benign(0) TCGA-CA-6717-01 22 32804193 32804193 C T RTCB Missense_Mutation p.G70D 0.20 deleterious(0) possibly_damaging(0.653) TCGA-CA-6717-01 22 32879987 32879987 C T FBXO7 Missense_Mutation p.S174L 0.11 deleterious(0) benign(0.1) TCGA-CA-6717-01 22 32937579 32937579 C A SYN3 Nonsense_Mutation p.G299* 0.16 TCGA-CA-6717-01 22 33253344 33253344 A C TIMP3 Missense_Mutation p.T105P 0.21 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 22 35481654 35481654 A G ISX Missense_Mutation p.K236E 0.07 tolerated(0.53) benign(0.113) TCGA-CA-6717-01 22 37211265 37211265 C T PVALB Missense_Mutation p.D26N 0.22 tolerated(0.95) benign(0.043) TCGA-CA-6717-01 22 37398276 37398276 C A TEX33 Missense_Mutation p.A31S 0.26 tolerated(0.13) benign(0.008) TCGA-CA-6717-01 22 37469594 37469594 G A TMPRSS6 Silent p.S520S 0.17 TCGA-CA-6717-01 22 37771204 37771204 C T ELFN2 Missense_Mutation p.R124Q 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 22 38120278 38120278 G A TRIOBP Missense_Mutation p.R572Q 0.06 tolerated_low_confidence(0.34) benign(0.004) TCGA-CA-6717-01 22 38120853 38120853 C A TRIOBP Missense_Mutation p.Q764K 0.16 deleterious_low_confidence(0.03) benign(0.042) TCGA-CA-6717-01 22 38121037 38121037 G A TRIOBP Missense_Mutation p.R825K 0.23 tolerated_low_confidence(0.11) benign(0.036) TCGA-CA-6717-01 22 38202264 38202264 G T H1F0 3'UTR 0.19 TCGA-CA-6717-01 22 38340228 38340228 T G C22orf23 Missense_Mutation p.D203A 0.17 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 22 38363649 38363649 T C POLR2F Missense_Mutation p.I104T 0.11 deleterious(0) possibly_damaging(0.617) TCGA-CA-6717-01 22 38612455 38612455 G A MAFF 3'UTR 0.25 TCGA-CA-6717-01 22 38692673 38692673 G T CSNK1E Intron 0.09 TCGA-CA-6717-01 22 38882168 38882168 T G DDX17 Missense_Mutation p.E656D 0.16 tolerated_low_confidence(0.28) possibly_damaging(0.764) TCGA-CA-6717-01 22 38934546 38934546 A G DMC1 Silent p.L220L 0.08 TCGA-CA-6717-01 22 38964291 38964291 A G DMC1 5'UTR 0.11 TCGA-CA-6717-01 22 39034809 39034809 G T FAM227A Missense_Mutation p.S99Y 0.19 deleterious(0) possibly_damaging(0.747) TCGA-CA-6717-01 22 39445506 39445506 G A APOBEC3F Missense_Mutation p.E215K 0.11 tolerated(0.19) probably_damaging(0.953) TCGA-CA-6717-01 22 39712805 39712805 T G RPL3 Missense_Mutation p.K136T 0.22 deleterious(0.04) benign(0.289) TCGA-CA-6717-01 22 39918168 39918168 A G ATF4 Missense_Mutation p.Q206R 0.08 tolerated(0.24) benign(0.005) TCGA-CA-6717-01 22 40068277 40068277 T G CACNA1I Missense_Mutation p.L1538R 0.09 deleterious(0) probably_damaging(0.928) TCGA-CA-6717-01 22 40217022 40217022 C A ENTHD1 Nonsense_Mutation p.E270* 0.14 TCGA-CA-6717-01 22 40757614 40757614 C T ADSL Missense_Mutation p.R329C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 22 40762493 40762493 C T ADSL Silent p.S474S 0.09 TCGA-CA-6717-01 22 41257958 41257958 G A DNAJB7 Missense_Mutation p.A14V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 22 41531883 41531883 T G EP300 Missense_Mutation p.M532R 0.19 unknown(0) TCGA-CA-6717-01 22 41573046 41573046 C T EP300 Silent p.G1777G 0.36 TCGA-CA-6717-01 22 42071039 42071039 G T NHP2L1 Silent p.V95V 0.10 TCGA-CA-6717-01 22 42090601 42090601 T C C22orf46 3'UTR 0.18 TCGA-CA-6717-01 22 42119978 42119978 C A MEI1 Silent p.L255L 0.12 TCGA-CA-6717-01 22 42128320 42128320 C A MEI1 Missense_Mutation p.L390M 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 22 42177770 42177770 C A MEI1 Missense_Mutation p.S1003Y 0.20 deleterious(0.01) possibly_damaging(0.679) TCGA-CA-6717-01 22 42191487 42191487 G T MEI1 Missense_Mutation p.A1203S 0.12 tolerated(0.16) benign(0.131) TCGA-CA-6717-01 22 42482239 42482239 G A NDUFA6 Missense_Mutation p.A138V 0.10 tolerated(0.26) benign(0.004) TCGA-CA-6717-01 22 42611050 42611050 C A TCF20 Missense_Mutation p.D88Y 0.09 possibly_damaging(0.823) TCGA-CA-6717-01 22 42970119 42970119 G A SERHL2 3'UTR 0.22 TCGA-CA-6717-01 22 43287079 43287079 G A PACSIN2 Silent p.F109F 0.21 TCGA-CA-6717-01 22 43901442 43901442 C A MPPED1 Nonsense_Mutation p.Y309* 0.09 TCGA-CA-6717-01 22 44004466 44004466 G A EFCAB6 Silent p.T859T 0.19 TCGA-CA-6717-01 22 44031028 44031028 G A EFCAB6 Silent p.F684F 0.08 TCGA-CA-6717-01 22 44067870 44067870 C T EFCAB6 Silent p.T541T 0.19 TCGA-CA-6717-01 22 44112823 44112823 T G EFCAB6 Missense_Mutation p.N263H 0.08 tolerated(0.15) benign(0.001) TCGA-CA-6717-01 22 44384992 44384992 A T SAMM50 Silent p.G359G 0.15 TCGA-CA-6717-01 22 45689176 45689176 C T UPK3A Missense_Mutation p.A229V 0.23 deleterious(0.01) benign(0.406) TCGA-CA-6717-01 22 45758768 45758768 C A SMC1B Missense_Mutation p.K853N 0.14 deleterious(0.03) possibly_damaging(0.568) TCGA-CA-6717-01 22 45767399 45767399 G A SMC1B Silent p.I755I 0.19 TCGA-CA-6717-01 22 45809741 45809741 G A RIBC2 5'UTR 0.29 TCGA-CA-6717-01 22 46134638 46134638 G A ATXN10 Missense_Mutation p.D308N 0.24 deleterious(0.03) probably_damaging(0.91) TCGA-CA-6717-01 22 46642648 46642648 T G CDPF1 Intron 0.17 TCGA-CA-6717-01 22 46652577 46652577 C A PKDREJ Missense_Mutation p.D2215Y 0.20 deleterious(0.01) possibly_damaging(0.711) TCGA-CA-6717-01 22 46655470 46655470 G T PKDREJ Silent p.V1250V 0.19 TCGA-CA-6717-01 22 46657481 46657481 A C PKDREJ Missense_Mutation p.F580C 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 22 46657613 46657613 G A PKDREJ Missense_Mutation p.S536L 0.12 tolerated(0.66) benign(0.007) TCGA-CA-6717-01 22 46668270 46668270 C T TTC38 Silent p.I50I 0.12 TCGA-CA-6717-01 22 46749743 46749743 C T TRMU Silent p.S284S 0.27 TCGA-CA-6717-01 22 46765588 46765588 C T CELSR1 Splice_Site p.X2624_splice 0.24 TCGA-CA-6717-01 22 46929875 46929875 C A CELSR1 Nonsense_Mutation p.E1065* 0.20 TCGA-CA-6717-01 22 46930061 46930061 C T CELSR1 Missense_Mutation p.E1003K 0.11 tolerated(0.19) probably_damaging(0.945) TCGA-CA-6717-01 22 46930455 46930455 C A CELSR1 Missense_Mutation p.Q871H 0.11 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 22 47857320 47857320 T C LL22NC03-75H12.2 3'UTR 0.42 TCGA-CA-6717-01 22 50280322 50280322 C T ZBED4 Silent p.F1004F 0.11 TCGA-CA-6717-01 22 50283296 50283296 C A ZBED4 3'UTR 0.09 TCGA-CA-6717-01 22 50313429 50313429 C T CRELD2 Silent p.F88F 0.26 TCGA-CA-6717-01 22 50678780 50678780 T C TUBGCP6 Missense_Mutation p.D253G 0.24 tolerated(0.06) probably_damaging(0.994) TCGA-CA-6717-01 22 50728923 50728923 C T PLXNB2 Missense_Mutation p.E31K 0.22 tolerated(0.3) benign(0.002) TCGA-CA-6717-01 22 50875494 50875494 G T PPP6R2 Intron 0.25 TCGA-CA-6717-01 22 50988831 50988831 C A KLHDC7B 3'UTR 0.18 TCGA-CA-6717-01 22 51045164 51045164 A G MAPK8IP2 Missense_Mutation p.K734E 0.18 deleterious(0.01) possibly_damaging(0.621) TCGA-CA-6717-01 2 100007156 100007156 A C EIF5B Missense_Mutation p.E912D 0.22 possibly_damaging(0.75) TCGA-CA-6717-01 2 100050819 100050819 C A REV1 Missense_Mutation p.Q471H 0.16 tolerated(0.12) probably_damaging(0.992) TCGA-CA-6717-01 2 100199360 100199360 G T AFF3 Missense_Mutation p.S923Y 0.15 deleterious(0.05) probably_damaging(0.915) TCGA-CA-6717-01 2 100199456 100199456 G A AFF3 Missense_Mutation p.A891V 0.23 deleterious(0.01) possibly_damaging(0.526) TCGA-CA-6717-01 2 10059935 10059935 G T TAF1B Missense_Mutation p.Q517H 0.28 tolerated(0.36) benign(0.03) TCGA-CA-6717-01 2 100623411 100623411 C A AFF3 Missense_Mutation p.V211L 0.17 tolerated(0.74) benign(0.027) TCGA-CA-6717-01 2 100623740 100623740 C A AFF3 Missense_Mutation p.Q144H 0.23 tolerated(0.53) benign(0.006) TCGA-CA-6717-01 2 101031533 101031533 C T CHST10 5'UTR 0.15 TCGA-CA-6717-01 2 101086976 101086976 C T NMS Missense_Mutation p.P9L 0.21 tolerated(0.11) benign(0.003) TCGA-CA-6717-01 2 101554236 101554236 G A NPAS2 Missense_Mutation p.A99T 0.14 deleterious(0.04) probably_damaging(0.919) TCGA-CA-6717-01 2 101624232 101624232 G A TBC1D8 3'UTR 0.14 TCGA-CA-6717-01 2 101634319 101634319 A T RPL31 Intron 0.21 TCGA-CA-6717-01 2 10187811 10187811 A G KLF11 Missense_Mutation p.E116G 0.17 deleterious(0) possibly_damaging(0.849) TCGA-CA-6717-01 2 102083319 102083319 G A RFX8 5'UTR 0.22 TCGA-CA-6717-01 2 102501695 102501695 T G MAP4K4 Silent p.S1044S 0.19 TCGA-CA-6717-01 2 102636132 102636132 A C IL1R2 Missense_Mutation p.K182N 0.19 deleterious(0.04) benign(0.289) TCGA-CA-6717-01 2 102968291 102968291 C A IL1RL1 Missense_Mutation p.F527L 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 103090407 103090407 T G SLC9A4 Missense_Mutation p.D63E 0.09 deleterious(0.02) probably_damaging(0.916) TCGA-CA-6717-01 2 103120123 103120123 T C SLC9A4 Missense_Mutation p.S313P 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6717-01 2 103274216 103274216 A G SLC9A2 Silent p.P161P 0.11 TCGA-CA-6717-01 2 103274472 103274472 G T SLC9A2 Missense_Mutation p.D247Y 0.23 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 2 103378636 103378636 A G TMEM182 5'UTR 0.19 TCGA-CA-6717-01 2 103378802 103378802 A C TMEM182 Missense_Mutation p.E42D 0.11 tolerated(0.33) benign(0.001) TCGA-CA-6717-01 2 105859309 105859309 C T GPR45 Missense_Mutation p.R332C 0.23 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 106013211 106013211 T C FHL2 Intron 0.17 TCGA-CA-6717-01 2 107007751 107007751 C A PLGLA RNA 0.24 TCGA-CA-6717-01 2 107007852 107007852 A G PLGLA RNA 0.06 TCGA-CA-6717-01 2 107029726 107029726 T C RGPD3 Missense_Mutation p.I1694V 0.09 deleterious_low_confidence(0) benign(0.031) TCGA-CA-6717-01 2 107041161 107041161 G T RGPD3 Missense_Mutation p.L1088I 0.22 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 2 107041314 107041314 G T RGPD3 Missense_Mutation p.H1037N 0.30 deleterious(0.01) benign(0.228) TCGA-CA-6717-01 2 107052622 107052622 T C RGPD3 Missense_Mutation p.Q572R 0.11 deleterious(0) benign(0.012) TCGA-CA-6717-01 2 107073564 107073564 T G RGPD3 Missense_Mutation p.N90H 0.20 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 2 108487328 108487328 G T RGPD4 Missense_Mutation p.K956N 0.15 tolerated(0.21) possibly_damaging(0.694) TCGA-CA-6717-01 2 108507242 108507242 C T RGPD4 3'UTR 0.18 TCGA-CA-6717-01 2 108625004 108625004 C A SLC5A7 Missense_Mutation p.L327I 0.19 deleterious(0.02) probably_damaging(0.967) TCGA-CA-6717-01 2 108627165 108627165 C A SLC5A7 Missense_Mutation p.L531I 0.17 tolerated(0.22) benign(0.052) TCGA-CA-6717-01 2 108921077 108921077 C T SULT1C2 Silent p.Y152Y 0.15 TCGA-CA-6717-01 2 108921994 108921994 C T SULT1C2 Missense_Mutation p.R252C 0.22 deleterious(0) benign(0.109) TCGA-CA-6717-01 2 109002823 109002823 G T SULT1C4 Missense_Mutation p.R264I 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 109086317 109086317 G T GCC2 Missense_Mutation p.D178Y 0.10 deleterious(0.01) possibly_damaging(0.642) TCGA-CA-6717-01 2 109088417 109088417 C A GCC2 Missense_Mutation p.L878I 0.19 deleterious(0.04) probably_damaging(0.991) TCGA-CA-6717-01 2 109104184 109104184 C T GCC2 Silent p.F1320F 0.09 TCGA-CA-6717-01 2 109223691 109223691 C T LIMS1 5'UTR 0.22 TCGA-CA-6717-01 2 109300471 109300471 C A LIMS1 3'UTR 0.10 TCGA-CA-6717-01 2 109369595 109369595 T G RANBP2 Missense_Mutation p.F633V 0.08 tolerated(0.06) benign(0.007) TCGA-CA-6717-01 2 109371385 109371385 A C RANBP2 Missense_Mutation p.K743Q 0.07 tolerated(0.08) benign(0.033) TCGA-CA-6717-01 2 109382980 109382980 C T RANBP2 Silent p.D1995D 0.13 TCGA-CA-6717-01 2 109421394 109421394 A C CCDC138 Missense_Mutation p.N262T 0.15 tolerated(1) possibly_damaging(0.607) TCGA-CA-6717-01 2 110049086 110049086 C A SH3RF3 Silent p.V511V 0.14 TCGA-CA-6717-01 2 110065862 110065862 G C SH3RF3 Missense_Mutation p.A689P 0.20 tolerated(0.52) benign(0.004) TCGA-CA-6717-01 2 110342812 110342812 T G SEPT10 Missense_Mutation p.N102H 0.21 tolerated(0.22) benign(0.004) TCGA-CA-6717-01 2 110374527 110374527 T G SOWAHC 3'UTR 0.10 TCGA-CA-6717-01 2 110375235 110375235 G T SOWAHC 3'UTR 0.14 TCGA-CA-6717-01 2 110926098 110926098 T C NPHP1 Silent p.K185K 0.24 TCGA-CA-6717-01 2 111395429 111395429 G T BUB1 3'UTR 0.13 TCGA-CA-6717-01 2 111398961 111398961 A G BUB1 Silent p.L902L 0.14 TCGA-CA-6717-01 2 111691071 111691071 C A ACOXL Missense_Mutation p.A304D 0.13 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 2 112614434 112614434 T G ANAPC1 Missense_Mutation p.K463T 0.18 tolerated(0.6) benign(0.001) TCGA-CA-6717-01 2 112686889 112686889 C A MERTK Missense_Mutation p.S85Y 0.20 deleterious(0) possibly_damaging(0.553) TCGA-CA-6717-01 2 112754930 112754930 C A MERTK Missense_Mutation p.P494Q 0.10 deleterious(0) probably_damaging(0.924) TCGA-CA-6717-01 2 112785959 112785959 G A MERTK Missense_Mutation p.D840N 0.11 tolerated(0.47) benign(0.049) TCGA-CA-6717-01 2 11300773 11300773 C A PQLC3 Silent p.I83I 0.10 TCGA-CA-6717-01 2 113079391 113079391 T C ZC3H6 Silent p.C345C 0.08 TCGA-CA-6717-01 2 113080467 113080467 A C ZC3H6 Missense_Mutation p.K443T 0.23 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 2 113138516 113138516 A C RGPD8 Missense_Mutation p.F1649C 0.07 deleterious_low_confidence(0) benign(0.429) TCGA-CA-6717-01 2 113251867 113251867 A C TTL Missense_Mutation p.R128S 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 113251879 113251879 C T TTL Silent p.L132L 0.11 TCGA-CA-6717-01 2 113417307 113417307 T C SLC20A1 Silent p.F525F 0.10 TCGA-CA-6717-01 2 11351925 11351925 T G ROCK2 Missense_Mutation p.K695N 0.09 tolerated(0.07) benign(0.178) TCGA-CA-6717-01 2 113587863 113587863 C A IL1B 3'UTR 0.24 TCGA-CA-6717-01 2 113593774 113593774 C A IL1B Missense_Mutation p.M11I 0.24 tolerated(0.17) benign(0.055) TCGA-CA-6717-01 2 11362292 11362292 C T ROCK2 Missense_Mutation p.R339Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 11364468 11364468 G A ROCK2 Silent p.I329I 0.09 TCGA-CA-6717-01 2 113950878 113950878 C T PSD4 Missense_Mutation p.R655W 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 113953336 113953336 C T PSD4 Silent p.L738L 0.10 TCGA-CA-6717-01 2 113999246 113999246 C T PAX8 Missense_Mutation p.R220Q 0.12 deleterious(0.02) possibly_damaging(0.478) TCGA-CA-6717-01 2 114398950 114398950 A C RABL2A Missense_Mutation p.K143Q 0.08 tolerated(0.08) probably_damaging(0.914) TCGA-CA-6717-01 2 114697652 114697652 A C ACTR3 Missense_Mutation p.Q219H 0.15 deleterious(0.04) possibly_damaging(0.853) TCGA-CA-6717-01 2 1161296 1161296 G A SNTG2 Silent p.A158A 0.13 TCGA-CA-6717-01 2 11716578 11716578 A G GREB1 Missense_Mutation p.K185R 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 2 11765288 11765288 G T GREB1 Nonsense_Mutation p.E1386* 0.32 TCGA-CA-6717-01 2 11802123 11802123 G A NTSR2 Missense_Mutation p.R290C 0.10 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 2 118575080 118575080 G A DDX18 Missense_Mutation p.G49E 0.21 tolerated_low_confidence(0.4) benign(0.002) TCGA-CA-6717-01 2 118579520 118579520 C T DDX18 Silent p.H278H 0.25 TCGA-CA-6717-01 2 118586563 118586563 T C DDX18 Silent p.I558I 0.11 TCGA-CA-6717-01 2 118588209 118588209 T G DDX18 Missense_Mutation p.F641C 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-CA-6717-01 2 118864324 118864324 C T INSIG2 Silent p.F127F 0.21 TCGA-CA-6717-01 2 120097418 120097418 C T C2orf76 Missense_Mutation p.V40I 0.09 tolerated(0.19) benign(0.005) TCGA-CA-6717-01 2 120236466 120236466 G A SCTR Silent p.S74S 0.13 TCGA-CA-6717-01 2 120252037 120252037 T C SCTR Missense_Mutation p.T54A 0.14 tolerated(0.59) benign(0.001) TCGA-CA-6717-01 2 120362809 120362809 C A PCDP1 Silent p.L359L 0.08 TCGA-CA-6717-01 2 120369301 120369301 G A PCDP1 Missense_Mutation p.V432I 0.11 tolerated(0.72) benign(0.001) TCGA-CA-6717-01 2 120369304 120369304 C T PCDP1 Missense_Mutation p.R433C 0.10 deleterious(0) possibly_damaging(0.669) TCGA-CA-6717-01 2 120439557 120439557 T C TMEM177 3'UTR 0.13 TCGA-CA-6717-01 2 120439576 120439576 C A TMEM177 3'UTR 0.12 TCGA-CA-6717-01 2 120635078 120635078 T G PTPN4 Missense_Mutation p.F110V 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 120640134 120640134 T C PTPN4 Silent p.Y174Y 0.09 TCGA-CA-6717-01 2 120734775 120734775 T G PTPN4 3'UTR 0.22 TCGA-CA-6717-01 2 120831702 120831702 C T EPB41L5 Nonsense_Mutation p.R119* 0.12 TCGA-CA-6717-01 2 120848067 120848067 C T EPB41L5 Nonsense_Mutation p.R340* 0.21 TCGA-CA-6717-01 2 120932635 120932635 T G EPB41L5 3'UTR 0.50 TCGA-CA-6717-01 2 121043651 121043651 G A RALB Missense_Mutation p.E106K 0.17 tolerated(0.27) possibly_damaging(0.561) TCGA-CA-6717-01 2 121708990 121708990 C A GLI2 Silent p.I142I 0.20 TCGA-CA-6717-01 2 121726437 121726437 G A GLI2 Missense_Mutation p.R264Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 2 121740294 121740294 C T GLI2 Silent p.F507F 0.09 TCGA-CA-6717-01 2 121747166 121747166 C T GLI2 Nonsense_Mutation p.R1226* 0.23 TCGA-CA-6717-01 2 121747860 121747860 A G GLI2 Missense_Mutation p.D1457G 0.15 deleterious(0.05) benign(0.01) TCGA-CA-6717-01 2 122104659 122104659 G A CLASP1 Silent p.I1495I 0.11 TCGA-CA-6717-01 2 122120867 122120867 G A CLASP1 Nonsense_Mutation p.R1363* 0.11 TCGA-CA-6717-01 2 122182853 122182853 A C CLASP1 Missense_Mutation p.L692V 0.20 tolerated(0.65) probably_damaging(0.997) TCGA-CA-6717-01 2 122206597 122206597 C A CLASP1 Missense_Mutation p.K541N 0.14 tolerated(0.06) possibly_damaging(0.65) TCGA-CA-6717-01 2 122488676 122488676 A C NIFK Missense_Mutation p.H119Q 0.10 tolerated(0.42) benign(0.001) TCGA-CA-6717-01 2 1251211 1251211 C A SNTG2 Missense_Mutation p.P334H 0.15 deleterious(0) probably_damaging(0.933) TCGA-CA-6717-01 2 125204497 125204497 T G CNTNAP5 Missense_Mutation p.L301V 0.15 deleterious(0.05) probably_damaging(0.983) TCGA-CA-6717-01 2 125232358 125232358 T G CNTNAP5 Missense_Mutation p.F321V 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-CA-6717-01 2 125232437 125232437 G A CNTNAP5 Missense_Mutation p.R347Q 0.12 tolerated(0.25) possibly_damaging(0.626) TCGA-CA-6717-01 2 125284910 125284910 C A CNTNAP5 Missense_Mutation p.A508D 0.23 deleterious(0.02) probably_damaging(0.949) TCGA-CA-6717-01 2 125530560 125530560 T C CNTNAP5 Silent p.H905H 0.07 TCGA-CA-6717-01 2 125671866 125671866 G T CNTNAP5 3'UTR 0.21 TCGA-CA-6717-01 2 128046427 128046427 T G ERCC3 Missense_Mutation p.E279A 0.29 tolerated(0.73) benign(0.019) TCGA-CA-6717-01 2 128093491 128093491 T G MAP3K2 Missense_Mutation p.K73N 0.17 deleterious(0.03) probably_damaging(0.914) TCGA-CA-6717-01 2 128100795 128100795 T C MAP3K2 Intron 0.21 TCGA-CA-6717-01 2 128342424 128342424 G T MYO7B Missense_Mutation p.K542N 0.20 deleterious(0) possibly_damaging(0.805) TCGA-CA-6717-01 2 128367497 128367497 G T MYO7B Missense_Mutation p.S1033I 0.16 tolerated(0.19) benign(0.1) TCGA-CA-6717-01 2 128384648 128384648 C T MYO7B Silent p.F1412F 0.25 TCGA-CA-6717-01 2 128408411 128408411 C T GPR17 Silent p.F62F 0.20 TCGA-CA-6717-01 2 128482768 128482768 T G WDR33 Silent p.V291V 0.23 TCGA-CA-6717-01 2 128735653 128735653 G A SAP130 Missense_Mutation p.R683W 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CA-6717-01 2 128896292 128896292 A C UGGT1 Missense_Mutation p.I529L 0.13 tolerated(0.11) benign(0.001) TCGA-CA-6717-01 2 130737987 130737987 C A RAB6C Nonsense_Mutation p.S100* 0.09 TCGA-CA-6717-01 2 130738936 130738936 C T RAB6C 3'UTR 0.22 TCGA-CA-6717-01 2 130739431 130739431 T G RAB6C 3'UTR 0.14 TCGA-CA-6717-01 2 130739846 130739846 A C RAB6C 3'UTR 0.06 TCGA-CA-6717-01 2 130902429 130902429 C A CCDC74B Missense_Mutation p.Q47H 0.22 deleterious(0.02) possibly_damaging(0.85) TCGA-CA-6717-01 2 130948182 130948182 A G MZT2B Missense_Mutation p.T154A 0.08 tolerated_low_confidence(0.21) benign(0.077) TCGA-CA-6717-01 2 131520144 131520144 C T AMER3 Missense_Mutation p.R167W 0.12 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 2 131522429 131522429 G A AMER3 3'UTR 0.24 TCGA-CA-6717-01 2 131524001 131524001 T G AMER3 3'UTR 0.13 TCGA-CA-6717-01 2 131803103 131803103 G A ARHGEF4 Intron 0.12 TCGA-CA-6717-01 2 131840165 131840165 C A FAM168B Nonsense_Mutation p.G19* 0.10 TCGA-CA-6717-01 2 132480222 132480222 G A C2orf27A Splice_Site 0.13 TCGA-CA-6717-01 2 132919191 132919191 C T ANKRD30BL Missense_Mutation p.D30N 0.09 tolerated(0.48) benign(0.128) TCGA-CA-6717-01 2 133175214 133175214 A C GPR39 Missense_Mutation p.E200A 0.26 tolerated(0.59) benign(0.027) TCGA-CA-6717-01 2 133489564 133489564 G A NCKAP5 Missense_Mutation p.S1730L 0.14 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 2 133539847 133539847 G A NCKAP5 Missense_Mutation p.R1513W 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 133542148 133542148 C A NCKAP5 Missense_Mutation p.D746Y 0.08 deleterious(0) probably_damaging(0.922) TCGA-CA-6717-01 2 133542437 133542437 A G NCKAP5 Silent p.F649F 0.13 TCGA-CA-6717-01 2 135028002 135028002 G A MGAT5 Missense_Mutation p.R96H 0.24 deleterious(0.03) possibly_damaging(0.87) TCGA-CA-6717-01 2 135180470 135180470 A G MGAT5 Missense_Mutation p.K592E 0.09 deleterious(0.02) benign(0.046) TCGA-CA-6717-01 2 135214258 135214258 C T TMEM163 3'UTR 0.11 TCGA-CA-6717-01 2 135308187 135308187 G A TMEM163 Missense_Mutation p.R138C 0.08 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 2 135596201 135596201 G A ACMSD 5'UTR 0.21 TCGA-CA-6717-01 2 135630130 135630130 G T ACMSD Missense_Mutation p.K256N 0.10 tolerated(0.11) benign(0.012) TCGA-CA-6717-01 2 135739046 135739046 T G MAP3K19 Missense_Mutation p.K1089Q 0.14 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 2 135740882 135740882 C A MAP3K19 Intron 0.20 TCGA-CA-6717-01 2 135741322 135741322 G T MAP3K19 Missense_Mutation p.S1049Y 0.13 tolerated(0.06) benign(0.031) TCGA-CA-6717-01 2 135743552 135743552 C T MAP3K19 Missense_Mutation p.E964K 0.19 tolerated(0.08) benign(0.11) TCGA-CA-6717-01 2 135745739 135745739 C T MAP3K19 Missense_Mutation p.E235K 0.24 tolerated(0.13) benign(0.037) TCGA-CA-6717-01 2 135756509 135756509 C A MAP3K19 Nonsense_Mutation p.E125* 0.22 TCGA-CA-6717-01 2 135779401 135779401 C T MAP3K19 Splice_Site p.X8_splice 0.20 TCGA-CA-6717-01 2 135890476 135890476 T G RAB3GAP1 Silent p.P416P 0.25 TCGA-CA-6717-01 2 135957926 135957926 A G ZRANB3 Silent p.L1076L 0.22 TCGA-CA-6717-01 2 136423046 136423046 T C R3HDM1 Intron 0.07 TCGA-CA-6717-01 2 136467011 136467011 T C R3HDM1 Missense_Mutation p.V788A 0.09 deleterious(0) benign(0.289) TCGA-CA-6717-01 2 136540382 136540382 T G UBXN4 Missense_Mutation p.I484M 0.09 deleterious(0) possibly_damaging(0.735) TCGA-CA-6717-01 2 136547344 136547344 C T LCT Missense_Mutation p.R1787Q 0.09 tolerated(0.05) possibly_damaging(0.832) TCGA-CA-6717-01 2 136590745 136590745 A G LCT Missense_Mutation p.V219A 0.18 deleterious(0) benign(0.314) TCGA-CA-6717-01 2 136594119 136594119 G A LCT Silent p.H207H 0.09 TCGA-CA-6717-01 2 136602162 136602162 T G MCM6 Missense_Mutation p.N768H 0.17 tolerated(0.16) benign(0.325) TCGA-CA-6717-01 2 136872397 136872397 A C CXCR4 3'UTR 0.18 TCGA-CA-6717-01 2 137748461 137748461 G T THSD7B Intron 0.23 TCGA-CA-6717-01 2 137814460 137814460 C T THSD7B Missense_Mutation p.R204C 0.16 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.14 tolerated(0.66) probably_damaging(0.964) TCGA-CA-6717-01 2 138330091 138330091 A G THSD7B Missense_Mutation p.M1133V 0.09 tolerated(0.59) unknown(0) TCGA-CA-6717-01 2 138434253 138434253 T G THSD7B 3'UTR 0.25 TCGA-CA-6717-01 2 139428701 139428701 G A NXPH2 Missense_Mutation p.R196W 0.15 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 2 139429181 139429181 C A NXPH2 Missense_Mutation p.D36Y 0.35 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-CA-6717-01 2 140990826 140990826 C A LRP1B Nonsense_Mutation p.G4577* 0.10 TCGA-CA-6717-01 2 140995800 140995800 G T LRP1B Missense_Mutation p.S4494Y 0.07 possibly_damaging(0.608) TCGA-CA-6717-01 2 141143563 141143563 C A LRP1B Missense_Mutation p.G3477V 0.18 probably_damaging(0.988) TCGA-CA-6717-01 2 141201990 141201990 G A LRP1B Silent p.F3401F 0.16 TCGA-CA-6717-01 2 141215094 141215094 A C LRP1B Missense_Mutation p.L3251R 0.09 possibly_damaging(0.766) TCGA-CA-6717-01 2 141243054 141243054 C T LRP1B Missense_Mutation p.D3095N 0.20 possibly_damaging(0.831) TCGA-CA-6717-01 2 141245214 141245214 C A LRP1B Missense_Mutation p.R3072I 0.12 possibly_damaging(0.639) TCGA-CA-6717-01 2 141264481 141264481 T C LRP1B Missense_Mutation p.N2802S 0.17 benign(0.292) TCGA-CA-6717-01 2 141291694 141291694 C T LRP1B Missense_Mutation p.R2553Q 0.09 possibly_damaging(0.553) TCGA-CA-6717-01 2 141291695 141291695 G A LRP1B Nonsense_Mutation p.R2553* 0.11 TCGA-CA-6717-01 2 141526884 141526884 G T LRP1B Missense_Mutation p.H1886N 0.16 benign(0.107) TCGA-CA-6717-01 2 141643780 141643780 G T LRP1B Missense_Mutation p.F1297L 0.09 benign(0.153) TCGA-CA-6717-01 2 141777666 141777666 C T LRP1B Missense_Mutation p.D599N 0.10 possibly_damaging(0.787) TCGA-CA-6717-01 2 142012121 142012121 C T LRP1B Missense_Mutation p.E145K 0.13 benign(0.305) TCGA-CA-6717-01 2 143799663 143799663 C A KYNU Silent p.L440L 0.09 TCGA-CA-6717-01 2 144008142 144008142 A C ARHGAP15 Missense_Mutation p.E149D 0.15 tolerated(1) benign(0.035) TCGA-CA-6717-01 2 144714907 144714907 C A GTDC1 Splice_Site p.X329_splice 0.21 TCGA-CA-6717-01 2 144728301 144728301 A C GTDC1 Missense_Mutation p.F302V 0.16 tolerated(0.22) possibly_damaging(0.825) TCGA-CA-6717-01 2 145146467 145146467 A C ZEB2 3'UTR 0.26 TCGA-CA-6717-01 2 145157496 145157496 G A ZEB2 Missense_Mutation p.L420F 0.16 tolerated(1) benign(0.273) TCGA-CA-6717-01 2 145161587 145161587 C T ZEB2 Missense_Mutation p.E235K 0.18 deleterious(0.05) probably_damaging(0.98) TCGA-CA-6717-01 2 14776151 14776151 A G FAM84A 3'UTR 0.14 TCGA-CA-6717-01 2 149221408 149221408 T G MBD5 Missense_Mutation p.I106S 0.15 deleterious(0) benign(0.402) TCGA-CA-6717-01 2 149226925 149226925 T G MBD5 Missense_Mutation p.N471K 0.12 deleterious(0.01) possibly_damaging(0.607) TCGA-CA-6717-01 2 149270559 149270559 G A MBD5 3'UTR 0.24 TCGA-CA-6717-01 2 149520246 149520246 T C EPC2 Silent p.L275L 0.10 TCGA-CA-6717-01 2 149853789 149853789 G A KIF5C Missense_Mutation p.E679K 0.09 tolerated(0.37) benign(0.004) TCGA-CA-6717-01 2 149854983 149854983 G A KIF5C Missense_Mutation p.E724K 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-CA-6717-01 2 149856979 149856979 T C KIF5C Silent p.S751S 0.22 TCGA-CA-6717-01 2 152222683 152222683 C T TNFAIP6 Missense_Mutation p.R116C 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 152348652 152348652 C T NEB Missense_Mutation p.M8339I 0.11 benign(0.03) TCGA-CA-6717-01 2 152381115 152381115 C A NEB Missense_Mutation p.D7430Y 0.16 probably_damaging(0.942) TCGA-CA-6717-01 2 152417606 152417606 T C NEB Missense_Mutation p.N6373S 0.15 possibly_damaging(0.659) TCGA-CA-6717-01 2 152467090 152467090 A G NEB Silent p.D3986D 0.11 TCGA-CA-6717-01 2 152468789 152468789 G A NEB Missense_Mutation p.R3906C 0.10 probably_damaging(0.989) TCGA-CA-6717-01 2 152476060 152476060 C T NEB Missense_Mutation p.D3593N 0.09 possibly_damaging(0.606) TCGA-CA-6717-01 2 152496964 152496964 C T NEB Missense_Mutation p.D2864N 0.20 benign(0.101) TCGA-CA-6717-01 2 152497137 152497137 A C NEB Missense_Mutation p.I2806S 0.08 probably_damaging(0.964) TCGA-CA-6717-01 2 152497158 152497158 C T NEB Missense_Mutation p.R2799H 0.12 probably_damaging(0.958) TCGA-CA-6717-01 2 152506779 152506779 G A NEB Missense_Mutation p.R2448C 0.24 probably_damaging(1) TCGA-CA-6717-01 2 152507262 152507262 C A NEB Missense_Mutation p.E2351D 0.16 possibly_damaging(0.884) TCGA-CA-6717-01 2 152512665 152512665 A G NEB Splice_Site p.X2165_splice 0.22 TCGA-CA-6717-01 2 152527556 152527556 T C NEB Missense_Mutation p.N1496S 0.08 probably_damaging(0.997) TCGA-CA-6717-01 2 152717302 152717302 G T CACNB4 Missense_Mutation p.S264Y 0.20 deleterious(0) probably_damaging(0.934) TCGA-CA-6717-01 2 152989913 152989913 T G STAM2 Intron 0.18 TCGA-CA-6717-01 2 153591537 153591537 A G ARL6IP6 Missense_Mutation p.T162A 0.08 tolerated(0.49) benign(0.005) TCGA-CA-6717-01 2 1546343 1546343 A G TPO 3'UTR 0.10 TCGA-CA-6717-01 2 155099216 155099216 C A GALNT13 Missense_Mutation p.L162I 0.12 deleterious(0.02) possibly_damaging(0.611) TCGA-CA-6717-01 2 155099405 155099405 A C GALNT13 Missense_Mutation p.I225L 0.15 deleterious(0.01) possibly_damaging(0.794) TCGA-CA-6717-01 2 15555706 15555706 T G NBAS Missense_Mutation p.K967N 0.16 tolerated(0.3) benign(0.021) TCGA-CA-6717-01 2 15607837 15607837 T G NBAS Missense_Mutation p.K657Q 0.08 tolerated(0.06) benign(0.017) TCGA-CA-6717-01 2 15615949 15615949 C A NBAS Silent p.V401V 0.10 TCGA-CA-6717-01 2 157425424 157425424 G A GPD2 Missense_Mutation p.R418Q 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 157435450 157435450 A C GPD2 Missense_Mutation p.K606T 0.12 tolerated(0.22) benign(0.004) TCGA-CA-6717-01 2 158115364 158115364 A C GALNT5 Missense_Mutation p.K257T 0.11 deleterious(0.04) benign(0.056) TCGA-CA-6717-01 2 158152997 158152997 A C GALNT5 Missense_Mutation p.N657H 0.24 deleterious(0.04) benign(0.078) TCGA-CA-6717-01 2 158177804 158177804 G A ERMN Silent p.F291F 0.09 TCGA-CA-6717-01 2 158443865 158443865 A G ACVR1C Silent p.C46C 0.09 TCGA-CA-6717-01 2 158630695 158630695 A G ACVR1 Missense_Mutation p.L183S 0.12 deleterious(0.01) benign(0.41) TCGA-CA-6717-01 2 158958576 158958576 A C UPP2 Missense_Mutation p.M58L 0.10 tolerated_low_confidence(0.12) benign(0.003) TCGA-CA-6717-01 2 159028732 159028732 G A CCDC148 Nonsense_Mutation p.R557* 0.26 TCGA-CA-6717-01 2 159672272 159672272 C A DAPL1 Missense_Mutation p.A88D 0.09 deleterious(0) possibly_damaging(0.9) TCGA-CA-6717-01 2 160027234 160027234 C A TANC1 Silent p.I423I 0.08 TCGA-CA-6717-01 2 160035592 160035592 C T TANC1 Missense_Mutation p.R810C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 160112755 160112755 C A WDSUB1 Nonsense_Mutation p.E362* 0.17 TCGA-CA-6717-01 2 160132074 160132074 G T WDSUB1 Missense_Mutation p.S220Y 0.06 tolerated(1) possibly_damaging(0.866) TCGA-CA-6717-01 2 160181356 160181356 A C BAZ2B Missense_Mutation p.F2107V 0.09 probably_damaging(0.999) TCGA-CA-6717-01 2 160189152 160189152 G T BAZ2B Missense_Mutation p.L1948I 0.09 probably_damaging(0.999) TCGA-CA-6717-01 2 160750509 160750509 G T LY75-CD302 Missense_Mutation p.L185I 0.18 tolerated(0.31) benign(0.023) TCGA-CA-6717-01 2 160833218 160833218 C A PLA2R1 Missense_Mutation p.K805N 0.10 tolerated(0.24) benign(0.005) TCGA-CA-6717-01 2 160994230 160994230 C A ITGB6 Nonsense_Mutation p.E459* 0.19 TCGA-CA-6717-01 2 162273394 162273394 A C TBR1 Missense_Mutation p.N158T 0.20 tolerated(0.17) probably_damaging(0.932) TCGA-CA-6717-01 2 162481037 162481037 T G SLC4A10 Missense_Mutation p.I3M 0.16 tolerated_low_confidence(0.16) benign(0.109) TCGA-CA-6717-01 2 162881402 162881402 G T DPP4 Missense_Mutation p.S312Y 0.42 tolerated(0.11) possibly_damaging(0.836) TCGA-CA-6717-01 2 163070482 163070482 A C FAP Missense_Mutation p.F323C 0.21 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 2 163072473 163072473 G A FAP Silent p.I267I 0.13 TCGA-CA-6717-01 2 163074599 163074599 A C FAP Missense_Mutation p.F220C 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6717-01 2 163075586 163075586 G T FAP Missense_Mutation p.D198E 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6717-01 2 163124632 163124632 C A IFIH1 Missense_Mutation p.E924D 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6717-01 2 163134131 163134131 A C IFIH1 Missense_Mutation p.I613S 0.10 deleterious(0) probably_damaging(0.957) TCGA-CA-6717-01 2 163134180 163134180 C A IFIH1 Nonsense_Mutation p.E597* 0.08 TCGA-CA-6717-01 2 163256867 163256867 G A KCNH7 Missense_Mutation p.R747W 0.08 deleterious(0) possibly_damaging(0.677) TCGA-CA-6717-01 2 163291709 163291709 G A KCNH7 Silent p.G651G 0.17 TCGA-CA-6717-01 2 163693050 163693050 T G KCNH7 Missense_Mutation p.N102H 0.13 deleterious(0) benign(0.016) TCGA-CA-6717-01 2 1637992 1637992 G A PXDN Missense_Mutation p.A1475V 0.19 tolerated_low_confidence(0.33) benign(0.001) TCGA-CA-6717-01 2 164466520 164466520 C T FIGN Missense_Mutation p.E608K 0.13 tolerated(0.13) probably_damaging(0.997) TCGA-CA-6717-01 2 1652311 1652311 G A PXDN Missense_Mutation p.L1081F 0.22 deleterious(0.03) possibly_damaging(0.844) TCGA-CA-6717-01 2 1658182 1658182 A C PXDN Missense_Mutation p.L646V 0.21 deleterious(0) possibly_damaging(0.829) TCGA-CA-6717-01 2 165946674 165946674 C A SCN3A Nonsense_Mutation p.E1997* 0.09 TCGA-CA-6717-01 2 165947052 165947052 G A SCN3A Nonsense_Mutation p.R1871* 0.18 TCGA-CA-6717-01 2 165947563 165947563 G T SCN3A Silent p.I1700I 0.23 TCGA-CA-6717-01 2 165953931 165953931 A G SCN3A Missense_Mutation p.F1357S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 165994579 165994579 G T SCN3A Missense_Mutation p.A734D 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 166003338 166003338 A C SCN3A Missense_Mutation p.S528A 0.07 deleterious(0.04) probably_damaging(0.992) TCGA-CA-6717-01 2 166019290 166019290 G T SCN3A Missense_Mutation p.S248Y 0.14 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 2 166025336 166025336 G T SCN3A Splice_Site p.X128_splice 0.10 TCGA-CA-6717-01 2 166223837 166223837 G A SCN2A Missense_Mutation p.E1211K 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-CA-6717-01 2 166231211 166231211 T G SCN2A Missense_Mutation p.L1330R 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 166237192 166237192 C A SCN2A Missense_Mutation p.L1467I 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 2 166245879 166245879 C A SCN2A Missense_Mutation p.L1855I 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 2 166618451 166618451 C T GALNT3 Missense_Mutation p.A268T 0.22 deleterious(0.04) probably_damaging(0.959) TCGA-CA-6717-01 2 166731340 166731340 A T TTC21B Silent p.V1292V 0.14 TCGA-CA-6717-01 2 166769040 166769040 G T TTC21B Missense_Mutation p.T769N 0.08 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 2 166805994 166805994 G A TTC21B Nonsense_Mutation p.R58* 0.14 TCGA-CA-6717-01 2 166872132 166872132 C A SCN1A Missense_Mutation p.A1179S 0.08 tolerated(0.61) possibly_damaging(0.812) TCGA-CA-6717-01 2 166892592 166892592 A C SCN1A Missense_Mutation p.F1132C 0.21 tolerated(0.05) probably_damaging(0.993) TCGA-CA-6717-01 2 166900465 166900465 G T SCN1A Missense_Mutation p.S586Y 0.29 deleterious(0.05) probably_damaging(0.98) TCGA-CA-6717-01 2 167145042 167145042 C A SCN9A Nonsense_Mutation p.E407* 0.09 TCGA-CA-6717-01 2 167162404 167162404 A G SCN9A Missense_Mutation p.F165S 0.08 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 2 167262612 167262612 G A SCN7A Silent p.T1509T 0.22 TCGA-CA-6717-01 2 167279808 167279808 G T SCN7A Missense_Mutation p.F996L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 2 167279901 167279901 T G SCN7A Missense_Mutation p.K965N 0.23 deleterious(0.01) possibly_damaging(0.701) TCGA-CA-6717-01 2 167289013 167289013 C A SCN7A Missense_Mutation p.D803Y 0.15 deleterious(0) probably_damaging(0.909) TCGA-CA-6717-01 2 167298010 167298010 G T SCN7A Missense_Mutation p.L685I 0.10 deleterious(0.01) benign(0.172) TCGA-CA-6717-01 2 167322317 167322317 C A SCN7A Missense_Mutation p.R282I 0.11 tolerated(0.15) possibly_damaging(0.882) TCGA-CA-6717-01 2 16734206 16734206 A G FAM49A Nonstop_Mutation p.*324Qext*11 0.12 TCGA-CA-6717-01 2 1680771 1680771 G A PXDN Missense_Mutation p.S259L 0.20 tolerated(0.66) benign(0.02) TCGA-CA-6717-01 2 168096427 168096427 A G XIRP2 Silent p.E307E 0.32 TCGA-CA-6717-01 2 168098407 168098407 C A XIRP2 Missense_Mutation p.A388D 0.22 possibly_damaging(0.887) TCGA-CA-6717-01 2 168099398 168099398 A G XIRP2 Missense_Mutation p.N499S 0.11 probably_damaging(0.948) TCGA-CA-6717-01 2 168101027 168101027 T G XIRP2 Missense_Mutation p.I1042R 0.17 probably_damaging(0.994) TCGA-CA-6717-01 2 168102538 168102538 G T XIRP2 Nonsense_Mutation p.E1546* 0.12 TCGA-CA-6717-01 2 168103598 168103598 T G XIRP2 Missense_Mutation p.I1899S 0.18 possibly_damaging(0.856) TCGA-CA-6717-01 2 168103615 168103615 G T XIRP2 Missense_Mutation p.A1905S 0.15 possibly_damaging(0.615) TCGA-CA-6717-01 2 168104179 168104179 C A XIRP2 Missense_Mutation p.L2093I 0.20 benign(0.026) TCGA-CA-6717-01 2 168105521 168105521 T G XIRP2 Missense_Mutation p.F2540C 0.13 probably_damaging(1) TCGA-CA-6717-01 2 168106209 168106209 A G XIRP2 Silent p.R2769R 0.21 TCGA-CA-6717-01 2 168108332 168108333 - A XIRP2 Frame_Shift_Ins p.N3479Kfs*14 0.15 TCGA-CA-6717-01 2 168114468 168114468 A G XIRP2 3'UTR 0.10 TCGA-CA-6717-01 2 168726189 168726189 C A B3GALT1 Silent p.R214R 0.17 TCGA-CA-6717-01 2 168821197 168821197 G A STK39 Missense_Mutation p.A513V 0.17 tolerated(0.17) benign(0.101) TCGA-CA-6717-01 2 169783735 169783735 A G ABCB11 Silent p.I1183I 0.10 TCGA-CA-6717-01 2 169874639 169874639 A C ABCB11 5'UTR 0.15 TCGA-CA-6717-01 2 169948309 169948309 G T DHRS9 Missense_Mutation p.M194I 0.11 tolerated(0.14) benign(0.387) TCGA-CA-6717-01 2 170013936 170013936 G T LRP2 Silent p.I3988I 0.10 TCGA-CA-6717-01 2 170030574 170030574 T G LRP2 Silent p.S3623S 0.10 TCGA-CA-6717-01 2 170032951 170032951 C A LRP2 Missense_Mutation p.S3514I 0.26 probably_damaging(0.998) TCGA-CA-6717-01 2 170066064 170066064 G A LRP2 Missense_Mutation p.A2123V 0.09 benign(0.028) TCGA-CA-6717-01 2 170070169 170070169 C T LRP2 Missense_Mutation p.R2013H 0.19 benign(0.001) TCGA-CA-6717-01 2 170072805 170072805 G A LRP2 Silent p.I1928I 0.16 TCGA-CA-6717-01 2 170092579 170092579 C A LRP2 Splice_Site p.X1564_splice 0.21 TCGA-CA-6717-01 2 170096097 170096097 G A LRP2 Missense_Mutation p.R1412W 0.21 probably_damaging(1) TCGA-CA-6717-01 2 170134298 170134298 G A LRP2 Missense_Mutation p.R577W 0.27 probably_damaging(0.998) TCGA-CA-6717-01 2 170139416 170139416 C A LRP2 Nonsense_Mutation p.E380* 0.11 TCGA-CA-6717-01 2 170151160 170151160 T G LRP2 Missense_Mutation p.K163T 0.21 benign(0.15) TCGA-CA-6717-01 2 170344581 170344581 C A BBS5 Missense_Mutation p.P115T 0.12 tolerated(0.06) probably_damaging(0.995) TCGA-CA-6717-01 2 170366660 170366660 T G KLHL41 Silent p.S124S 0.15 TCGA-CA-6717-01 2 170386418 170386418 T A FASTKD1 Missense_Mutation p.N821Y 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 2 170387899 170387899 C T FASTKD1 Missense_Mutation p.E764K 0.06 tolerated(0.42) benign(0.003) TCGA-CA-6717-01 2 170493215 170493215 A C PPIG Missense_Mutation p.K483Q 0.08 deleterious(0) unknown(0) TCGA-CA-6717-01 2 170531417 170531417 T C CCDC173 Missense_Mutation p.Q143R 0.21 tolerated(0.13) benign(0.256) TCGA-CA-6717-01 2 170531437 170531437 C A CCDC173 Missense_Mutation p.K136N 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-CA-6717-01 2 170557756 170557756 T G PHOSPHO2 Missense_Mutation p.F92C 0.14 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 2 170591545 170591545 A T KLHL23 Missense_Mutation p.E7D 0.09 tolerated(0.33) benign(0.004) TCGA-CA-6717-01 2 170606000 170606000 G T KLHL23 Nonsense_Mutation p.E479* 0.08 TCGA-CA-6717-01 2 170666910 170666910 G T SSB Missense_Mutation p.D263Y 0.12 deleterious(0) probably_damaging(0.941) TCGA-CA-6717-01 2 170762559 170762559 G A UBR3 Missense_Mutation p.R555Q 0.16 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 2 170789454 170789454 A G UBR3 Missense_Mutation p.M867V 0.10 tolerated(0.47) possibly_damaging(0.824) TCGA-CA-6717-01 2 171034706 171034706 G T MYO3B 5'UTR 0.12 TCGA-CA-6717-01 2 171191938 171191938 G T MYO3B Nonsense_Mutation p.E265* 0.10 TCGA-CA-6717-01 2 171356191 171356191 T A MYO3B Missense_Mutation p.N1054K 0.10 deleterious(0.01) possibly_damaging(0.621) TCGA-CA-6717-01 2 171399433 171399433 G A MYO3B Missense_Mutation p.S1198N 0.20 tolerated_low_confidence(0.23) benign(0.003) TCGA-CA-6717-01 2 171675092 171675092 G A GAD1 5'UTR 0.19 TCGA-CA-6717-01 2 171702556 171702556 C A GAD1 Missense_Mutation p.L329I 0.18 tolerated(0.36) benign(0.008) TCGA-CA-6717-01 2 172337639 172337639 T G DCAF17 3'UTR 0.17 TCGA-CA-6717-01 2 172604492 172604492 A C DYNC1I2 3'UTR 0.11 TCGA-CA-6717-01 2 172641836 172641836 G T SLC25A12 Missense_Mutation p.S662Y 0.13 tolerated(0.15) benign(0.429) TCGA-CA-6717-01 2 172803227 172803227 G T HAT1 Splice_Site p.X38_splice 0.10 TCGA-CA-6717-01 2 172930453 172930453 A G METAP1D Missense_Mutation p.N157S 0.11 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 2 172966977 172966977 A G DLX2 Missense_Mutation p.L97P 0.20 tolerated(0.05) benign(0.014) TCGA-CA-6717-01 2 173349578 173349578 C T ITGA6 Nonsense_Mutation p.R540* 0.18 TCGA-CA-6717-01 2 173782536 173782536 C T RAPGEF4 Nonsense_Mutation p.R151* 0.10 TCGA-CA-6717-01 2 173832026 173832026 C A RAPGEF4 Missense_Mutation p.F286L 0.12 tolerated(0.21) probably_damaging(0.998) TCGA-CA-6717-01 2 173881143 173881143 T C RAPGEF4 Silent p.L626L 0.10 TCGA-CA-6717-01 2 173916430 173916430 A C RAPGEF4 Missense_Mutation p.N991H 0.09 deleterious(0.02) possibly_damaging(0.553) TCGA-CA-6717-01 2 174086140 174086140 G A MLTK Intron 0.15 TCGA-CA-6717-01 2 174820931 174820931 T G SP3 Silent p.G103G 0.17 TCGA-CA-6717-01 2 175202067 175202067 C T AC018470.1 Missense_Mutation p.A29T 0.25 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 2 175292727 175292727 G T SCRN3 3'UTR 0.17 TCGA-CA-6717-01 2 175330596 175330596 A G GPR155 Missense_Mutation p.F434S 0.13 tolerated(0.16) benign(0.222) TCGA-CA-6717-01 2 175337850 175337850 G A GPR155 Nonsense_Mutation p.R235* 0.17 TCGA-CA-6717-01 2 175346369 175346369 T C GPR155 Missense_Mutation p.I106V 0.13 tolerated(0.4) benign(0.013) TCGA-CA-6717-01 2 175436505 175436505 G A WIPF1 Missense_Mutation p.S343L 0.16 tolerated(0.41) benign(0.055) TCGA-CA-6717-01 2 175711778 175711778 C A CHN1 Intron 0.08 TCGA-CA-6717-01 2 175939259 175939259 A G ATF2 3'UTR 0.21 TCGA-CA-6717-01 2 176001200 176001200 C A ATF2 5'UTR 0.12 TCGA-CA-6717-01 2 176948219 176948219 C T EVX2 Missense_Mutation p.A96T 0.13 tolerated(0.28) benign(0.013) TCGA-CA-6717-01 2 176948525 176948525 C T EVX2 5'UTR 0.14 TCGA-CA-6717-01 2 176959247 176959247 G A HOXD13 Missense_Mutation p.R274Q 0.10 deleterious(0) benign(0.081) TCGA-CA-6717-01 2 17698003 17698003 C A RAD51AP2 Missense_Mutation p.K560N 0.08 tolerated(0.11) benign(0.15) TCGA-CA-6717-01 2 176981665 176981665 A G HOXD10 Missense_Mutation p.Y35C 0.18 tolerated(0.13) probably_damaging(0.986) TCGA-CA-6717-01 2 176981961 176981961 C T HOXD10 Silent p.L134L 0.19 TCGA-CA-6717-01 2 176984027 176984027 G A HOXD10 3'UTR 0.24 TCGA-CA-6717-01 2 177015103 177015103 C T HOXD3 5'Flank 0.13 TCGA-CA-6717-01 2 177015132 177015132 A C HOXD3 5'UTR 0.14 TCGA-CA-6717-01 2 177016331 177016331 A G HOXD3 5'UTR 0.21 TCGA-CA-6717-01 2 177016452 177016452 G A HOXD4 Missense_Mutation p.E31K 0.09 tolerated(0.08) benign(0.116) TCGA-CA-6717-01 2 177054586 177054586 A T HOXD1 Missense_Mutation p.N235Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 178080570 178080570 A G HNRNPA3 Silent p.R96R 0.20 TCGA-CA-6717-01 2 178097307 178097307 G T NFE2L2 Missense_Mutation p.S136Y 0.12 tolerated(0.06) benign(0.361) TCGA-CA-6717-01 2 178416178 178416178 T G TTC30B Missense_Mutation p.E438D 0.05 tolerated(0.24) benign(0.167) TCGA-CA-6717-01 2 178416783 178416783 G A TTC30B Missense_Mutation p.R237C 0.18 deleterious(0.03) benign(0.079) TCGA-CA-6717-01 2 17846744 17846744 A T SMC6 3'UTR 0.13 TCGA-CA-6717-01 2 178481599 178481599 C A TTC30A Nonsense_Mutation p.E611* 0.12 TCGA-CA-6717-01 2 17864965 17864965 A C SMC6 Missense_Mutation p.F915C 0.22 tolerated(0.11) possibly_damaging(0.798) TCGA-CA-6717-01 2 178705003 178705003 T C PDE11A Missense_Mutation p.Y492C 0.18 tolerated(0.17) probably_damaging(0.998) TCGA-CA-6717-01 2 178990822 178990822 G T RBM45 Missense_Mutation p.K448N 0.10 deleterious(0.03) possibly_damaging(0.765) TCGA-CA-6717-01 2 179209052 179209052 C T OSBPL6 Missense_Mutation p.R343C 0.16 tolerated(0.19) possibly_damaging(0.648) TCGA-CA-6717-01 2 179296779 179296779 G A PRKRA 3'UTR 0.11 TCGA-CA-6717-01 2 179325898 179325898 G T DFNB59 Missense_Mutation p.R319M 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CA-6717-01 2 179325961 179325961 C A DFNB59 Missense_Mutation p.A340E 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.782) TCGA-CA-6717-01 2 179399240 179399240 G A TTN Silent p.F34034F 0.21 TCGA-CA-6717-01 2 179401078 179401078 G A TTN Missense_Mutation p.R33466C 0.12 TCGA-CA-6717-01 2 179408564 179408564 A C TTN Missense_Mutation p.Y32103D 0.18 TCGA-CA-6717-01 2 179413798 179413798 T G TTN Missense_Mutation p.E30852A 0.11 TCGA-CA-6717-01 2 179419340 179419340 G A TTN Silent p.R29578R 0.10 TCGA-CA-6717-01 2 179419748 179419748 C A TTN Nonsense_Mutation p.E29480* 0.27 TCGA-CA-6717-01 2 179422484 179422484 G A TTN Silent p.V29199V 0.23 TCGA-CA-6717-01 2 179424331 179424331 A C TTN Nonsense_Mutation p.L28843* 0.31 TCGA-CA-6717-01 2 179425086 179425086 C A TTN Missense_Mutation p.E28591D 0.11 TCGA-CA-6717-01 2 179428768 179428768 A G TTN Missense_Mutation p.V27364A 0.12 TCGA-CA-6717-01 2 179430960 179430960 G A TTN Silent p.F26633F 0.18 TCGA-CA-6717-01 2 179432721 179432721 A G TTN Silent p.H26046H 0.21 TCGA-CA-6717-01 2 179436327 179436327 G T TTN Nonsense_Mutation p.Y24844* 0.10 TCGA-CA-6717-01 2 179436561 179436561 G C TTN Missense_Mutation p.S24766R 0.06 TCGA-CA-6717-01 2 179436945 179436945 C A TTN Missense_Mutation p.E24638D 0.13 TCGA-CA-6717-01 2 179438028 179438028 A G TTN Silent p.L24277L 0.09 TCGA-CA-6717-01 2 179444390 179444390 C A TTN Missense_Mutation p.D22512Y 0.09 TCGA-CA-6717-01 2 179454008 179454008 G T TTN Nonsense_Mutation p.S20815* 0.09 TCGA-CA-6717-01 2 179458113 179458113 T C TTN Missense_Mutation p.K19608E 0.06 TCGA-CA-6717-01 2 179464144 179464144 T G TTN Silent p.I18792I 0.19 TCGA-CA-6717-01 2 179468753 179468753 T A TTN Missense_Mutation p.I18221L 0.20 TCGA-CA-6717-01 2 179474021 179474021 G T TTN Missense_Mutation p.S17339Y 0.24 TCGA-CA-6717-01 2 179476317 179476317 C A TTN Missense_Mutation p.G16880V 0.24 TCGA-CA-6717-01 2 179479133 179479133 T G TTN Intron 0.08 TCGA-CA-6717-01 2 179479330 179479330 C A TTN Missense_Mutation p.R16304I 0.09 TCGA-CA-6717-01 2 179479527 179479527 T C TTN Intron 0.12 TCGA-CA-6717-01 2 179486224 179486224 G A TTN Silent p.T15109T 0.07 TCGA-CA-6717-01 2 179496983 179496983 G A TTN Silent p.D14546D 0.15 TCGA-CA-6717-01 2 179497446 179497446 A G TTN Silent p.C14429C 0.15 TCGA-CA-6717-01 2 179500443 179500443 C A TTN Splice_Site p.X13870_splice 0.19 TCGA-CA-6717-01 2 179516427 179516427 G A TTN Silent p.V13143V 0.15 TCGA-CA-6717-01 2 179531615 179531615 G T TTN Missense_Mutation p.F11937L 0.17 TCGA-CA-6717-01 2 179539106 179539106 G T TTN Nonsense_Mutation p.S11548* 0.20 TCGA-CA-6717-01 2 179546137 179546137 G T TTN Silent p.P11071P 0.11 TCGA-CA-6717-01 2 179548768 179548768 G T TTN Missense_Mutation p.L10922M 0.11 TCGA-CA-6717-01 2 179552847 179552847 C A TTN Nonsense_Mutation p.E10768* 0.09 TCGA-CA-6717-01 2 179558356 179558356 C A TTN Missense_Mutation p.R10525M 0.14 TCGA-CA-6717-01 2 179577515 179577515 G A TTN Silent p.F9079F 0.12 TCGA-CA-6717-01 2 179577860 179577860 T C TTN Missense_Mutation p.T9001A 0.15 TCGA-CA-6717-01 2 179584078 179584078 C T TTN Silent p.P8013P 0.15 TCGA-CA-6717-01 2 179590150 179590150 G A TTN Silent p.C6927C 0.18 TCGA-CA-6717-01 2 179590337 179590337 A G TTN Missense_Mutation p.V6865A 0.10 TCGA-CA-6717-01 2 179592083 179592083 A G TTN Missense_Mutation p.V6670A 0.10 TCGA-CA-6717-01 2 179593094 179593094 T G TTN Missense_Mutation p.K6486T 0.22 TCGA-CA-6717-01 2 179596155 179596155 A C TTN Missense_Mutation p.F5780V 0.10 TCGA-CA-6717-01 2 179599215 179599215 C A TTN Missense_Mutation p.K5112N 0.11 TCGA-CA-6717-01 2 179599526 179599526 G A TTN Missense_Mutation p.T5042M 0.24 TCGA-CA-6717-01 2 179610986 179610986 G A TTN Intron 0.19 TCGA-CA-6717-01 2 179611244 179611244 C A TTN Intron 0.09 TCGA-CA-6717-01 2 179611437 179611437 T G TTN Intron 0.18 TCGA-CA-6717-01 2 179611958 179611958 C T TTN Intron 0.09 TCGA-CA-6717-01 2 179611980 179611980 T G TTN Intron 0.12 TCGA-CA-6717-01 2 17961336 17961336 C T GEN1 Silent p.I452I 0.10 TCGA-CA-6717-01 2 179615272 179615272 G T TTN Intron 0.17 TCGA-CA-6717-01 2 179615383 179615383 C T TTN Intron 0.09 TCGA-CA-6717-01 2 179615666 179615666 C A TTN Intron 0.26 TCGA-CA-6717-01 2 179616104 179616104 C A TTN Intron 0.17 TCGA-CA-6717-01 2 179616759 179616759 G T TTN Intron 0.13 TCGA-CA-6717-01 2 179622336 179622336 G T TTN Nonsense_Mutation p.Y3537* 0.15 TCGA-CA-6717-01 2 179622499 179622499 C A TTN Missense_Mutation p.R3483I 0.12 TCGA-CA-6717-01 2 179623873 179623873 C T TTN Missense_Mutation p.D3381N 0.09 TCGA-CA-6717-01 2 17962954 17962954 A C GEN1 Missense_Mutation p.Q825H 0.09 deleterious(0.03) benign(0.023) TCGA-CA-6717-01 2 179635962 179635962 T C TTN Missense_Mutation p.T2698A 0.07 TCGA-CA-6717-01 2 179640471 179640471 G T TTN Missense_Mutation p.H2040Q 0.11 TCGA-CA-6717-01 2 179641466 179641467 - T TTN Frame_Shift_Ins p.L1709Tfs*7 0.19 TCGA-CA-6717-01 2 179654731 179654731 C A TTN Nonsense_Mutation p.E638* 0.16 TCGA-CA-6717-01 2 179654773 179654773 C T TTN Missense_Mutation p.D624N 0.08 TCGA-CA-6717-01 2 179654779 179654779 C A TTN Nonsense_Mutation p.E622* 0.15 TCGA-CA-6717-01 2 179702021 179702021 T G CCDC141 Missense_Mutation p.S1309R 0.11 deleterious(0.04) probably_damaging(0.965) TCGA-CA-6717-01 2 179714832 179714832 G T CCDC141 Missense_Mutation p.L1101I 0.09 tolerated(0.22) probably_damaging(0.919) TCGA-CA-6717-01 2 179981480 179981480 A C SESTD1 Missense_Mutation p.L521R 0.10 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 2 180634406 180634406 T G ZNF385B Missense_Mutation p.K26T 0.13 deleterious(0.01) benign(0.034) TCGA-CA-6717-01 2 180810351 180810351 T G CWC22 Missense_Mutation p.Q744H 0.22 tolerated_low_confidence(0.42) benign(0) TCGA-CA-6717-01 2 180810365 180810365 T G CWC22 Missense_Mutation p.N740H 0.10 tolerated_low_confidence(0.2) benign(0.001) TCGA-CA-6717-01 2 180835532 180835532 C A CWC22 Missense_Mutation p.R331I 0.09 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 2 182402891 182402891 C A CERKL 3'Flank 0.20 TCGA-CA-6717-01 2 182766896 182766896 G T SSFA2 Missense_Mutation p.E372D 0.15 tolerated(0.48) benign(0.03) TCGA-CA-6717-01 2 182780742 182780742 G A SSFA2 Missense_Mutation p.G792D 0.23 tolerated(0.17) benign(0.015) TCGA-CA-6717-01 2 182850701 182850701 G A PPP1R1C 5'UTR 0.25 TCGA-CA-6717-01 2 183032861 183032861 G T PDE1A Intron 0.15 TCGA-CA-6717-01 2 183066172 183066172 G T PDE1A Missense_Mutation p.F389L 0.11 deleterious(0.01) possibly_damaging(0.88) TCGA-CA-6717-01 2 183621135 183621135 T G DNAJC10 Missense_Mutation p.F583C 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 183847562 183847562 C T NCKAP1 Missense_Mutation p.D405N 0.08 deleterious(0) probably_damaging(0.913) TCGA-CA-6717-01 2 183868018 183868018 C T NCKAP1 Silent p.E91E 0.17 TCGA-CA-6717-01 2 183960224 183960224 C T DUSP19 Silent p.F164F 0.11 TCGA-CA-6717-01 2 185800685 185800685 G T ZNF804A Nonsense_Mutation p.E188* 0.07 TCGA-CA-6717-01 2 185801235 185801235 C A ZNF804A Missense_Mutation p.S371Y 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-CA-6717-01 2 185803118 185803118 C A ZNF804A Missense_Mutation p.L999I 0.13 tolerated(0.06) probably_damaging(0.952) TCGA-CA-6717-01 2 186672307 186672307 C A FSIP2 Missense_Mutation p.L6181I 0.09 probably_damaging(0.998) TCGA-CA-6717-01 2 186672480 186672480 C A FSIP2 Silent p.I6238I 0.16 TCGA-CA-6717-01 2 186673007 186673007 T G FSIP2 Missense_Mutation p.I6414S 0.12 possibly_damaging(0.89) TCGA-CA-6717-01 2 186673483 186673483 G A FSIP2 Missense_Mutation p.D6573N 0.25 probably_damaging(0.998) TCGA-CA-6717-01 2 186673630 186673630 G A FSIP2 Missense_Mutation p.D6622N 0.16 probably_damaging(0.998) TCGA-CA-6717-01 2 186678329 186678329 C T FSIP2 Missense_Mutation p.L6718F 0.19 probably_damaging(0.998) TCGA-CA-6717-01 2 186692889 186692889 C A FSIP2 Missense_Mutation p.S6916Y 0.23 benign(0.03) TCGA-CA-6717-01 2 18736403 18736403 A G RDH14 3'UTR 0.21 TCGA-CA-6717-01 2 187373434 187373434 T G ZC3H15 Missense_Mutation p.L419V 0.14 deleterious(0.01) unknown(0) TCGA-CA-6717-01 2 18745147 18745147 A G NT5C1B Missense_Mutation p.F583S 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 187511452 187511452 A C ITGAV Missense_Mutation p.K400T 0.12 tolerated(0.05) benign(0.207) TCGA-CA-6717-01 2 187626229 187626229 A G FAM171B Missense_Mutation p.K387R 0.16 tolerated(0.4) benign(0.335) TCGA-CA-6717-01 2 187626809 187626809 G T FAM171B Missense_Mutation p.E580D 0.24 tolerated(1) benign(0.057) TCGA-CA-6717-01 2 187627271 187627271 G T FAM171B Missense_Mutation p.K734N 0.16 deleterious(0.05) probably_damaging(1) TCGA-CA-6717-01 2 189599498 189599498 A C DIRC1 Silent p.S50S 0.11 TCGA-CA-6717-01 2 189898829 189898829 G A COL5A2 Silent p.F1489F 0.19 TCGA-CA-6717-01 2 190340106 190340106 T G WDR75 Missense_Mutation p.F819C 0.09 deleterious(0.01) benign(0.264) TCGA-CA-6717-01 2 190531180 190531180 A C ASNSD1 Missense_Mutation p.I108L 0.13 tolerated(0.06) possibly_damaging(0.517) TCGA-CA-6717-01 2 190532075 190532075 G A ASNSD1 Missense_Mutation p.R406Q 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 190535215 190535215 G A ASNSD1 Silent p.P565P 0.16 TCGA-CA-6717-01 2 190569858 190569858 G A ANKAR Silent p.P606P 0.14 TCGA-CA-6717-01 2 190719518 190719518 C A PMS1 Nonsense_Mutation p.S507* 0.16 TCGA-CA-6717-01 2 190927176 190927176 T G MSTN Missense_Mutation p.K49N 0.11 deleterious(0) possibly_damaging(0.848) TCGA-CA-6717-01 2 191065298 191065298 C T C2orf88 3'UTR 0.13 TCGA-CA-6717-01 2 191364766 191364766 C A MFSD6 Missense_Mutation p.S733Y 0.12 deleterious_low_confidence(0.01) benign(0.068) TCGA-CA-6717-01 2 191555067 191555067 T G NAB1 3'UTR 0.18 TCGA-CA-6717-01 2 191759972 191759972 A G GLS Missense_Mutation p.T161A 0.08 tolerated(0.4) benign(0.001) TCGA-CA-6717-01 2 191827722 191827722 A C GLS 3'UTR 0.22 TCGA-CA-6717-01 2 191841664 191841664 A G STAT1 Missense_Mutation p.M654T 0.11 deleterious(0.02) benign(0.045) TCGA-CA-6717-01 2 191844574 191844574 T G STAT1 Missense_Mutation p.N551H 0.19 tolerated(0.08) possibly_damaging(0.895) TCGA-CA-6717-01 2 191926469 191926469 G T STAT4 Missense_Mutation p.F340L 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 191937835 191937835 T G STAT4 Missense_Mutation p.N152H 0.14 deleterious(0.04) benign(0.134) TCGA-CA-6717-01 2 192256903 192256903 G T MYO1B Missense_Mutation p.K684N 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 2 192272860 192272860 A G MYO1B Missense_Mutation p.K859R 0.09 tolerated(0.13) probably_damaging(0.995) TCGA-CA-6717-01 2 1926705 1926705 T C MYT1L Missense_Mutation p.N279S 0.12 tolerated_low_confidence(0.22) benign(0.02) TCGA-CA-6717-01 2 193044314 193044314 T G TMEFF2 Intron 0.08 TCGA-CA-6717-01 2 19553372 19553372 C T OSR1 Silent p.P65P 0.14 TCGA-CA-6717-01 2 19553567 19553567 T G OSR1 5'UTR 0.10 TCGA-CA-6717-01 2 196592889 196592889 T G SLC39A10 Missense_Mutation p.F718C 0.09 tolerated(0.07) probably_damaging(1) TCGA-CA-6717-01 2 196673578 196673578 A C DNAH7 Missense_Mutation p.F3304C 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 196681363 196681363 A C DNAH7 Missense_Mutation p.I3250M 0.11 tolerated(0.1) benign(0.007) TCGA-CA-6717-01 2 196726485 196726485 G A DNAH7 Silent p.L2564L 0.09 TCGA-CA-6717-01 2 196729430 196729430 G A DNAH7 Nonsense_Mutation p.R2317* 0.22 TCGA-CA-6717-01 2 196759734 196759734 A G DNAH7 Missense_Mutation p.V1621A 0.09 deleterious(0.05) benign(0.012) TCGA-CA-6717-01 2 196801406 196801406 C A DNAH7 Missense_Mutation p.K1063N 0.08 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 2 196825553 196825553 G A DNAH7 Silent p.V774V 0.12 TCGA-CA-6717-01 2 196912117 196912117 T G DNAH7 Missense_Mutation p.K119N 0.13 deleterious(0.01) benign(0.196) TCGA-CA-6717-01 2 197021246 197021246 A C STK17B Silent p.L84L 0.16 TCGA-CA-6717-01 2 197105209 197105209 C A HECW2 Missense_Mutation p.R1243I 0.12 deleterious(0) probably_damaging(0.977) TCGA-CA-6717-01 2 197641211 197641211 T G GTF3C3 Missense_Mutation p.E511D 0.17 tolerated(0.12) benign(0.021) TCGA-CA-6717-01 2 197657733 197657733 C T GTF3C3 Missense_Mutation p.D120N 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.808) TCGA-CA-6717-01 2 197672165 197672165 T G C2orf66 3'UTR 0.09 TCGA-CA-6717-01 2 197705957 197705957 C A PGAP1 3'UTR 0.08 TCGA-CA-6717-01 2 197863139 197863139 A C ANKRD44 Missense_Mutation p.I865M 0.11 tolerated(0.2) benign(0.215) TCGA-CA-6717-01 2 197953512 197953512 G A ANKRD44 Silent p.H205H 0.13 TCGA-CA-6717-01 2 197990157 197990157 G A ANKRD44 Silent p.I166I 0.23 TCGA-CA-6717-01 2 198266768 198266768 C T SF3B1 Missense_Mutation p.E722K 0.10 deleterious(0.01) possibly_damaging(0.899) TCGA-CA-6717-01 2 198283699 198283699 T G SF3B1 Intron 0.22 TCGA-CA-6717-01 2 198353833 198353833 G A HSPD1 Missense_Mutation p.R370C 0.10 tolerated(0.07) benign(0.025) TCGA-CA-6717-01 2 198363458 198363458 A C HSPD1 Missense_Mutation p.L39V 0.15 tolerated(0.22) benign(0.345) TCGA-CA-6717-01 2 198436782 198436782 C T RFTN2 Missense_Mutation p.D486N 0.20 deleterious(0.01) possibly_damaging(0.906) TCGA-CA-6717-01 2 198482576 198482576 G T RFTN2 Missense_Mutation p.S333Y 0.14 deleterious(0) possibly_damaging(0.844) TCGA-CA-6717-01 2 198571550 198571550 A G MARS2 Missense_Mutation p.E474G 0.18 deleterious(0) benign(0.152) TCGA-CA-6717-01 2 198572575 198572575 G T MARS2 3'UTR 0.16 TCGA-CA-6717-01 2 198572877 198572877 A C MARS2 3'UTR 0.20 TCGA-CA-6717-01 2 198636598 198636598 G A BOLL Missense_Mutation p.S166L 0.13 deleterious(0.02) benign(0.388) TCGA-CA-6717-01 2 198948721 198948721 T C PLCL1 Silent p.I160I 0.30 TCGA-CA-6717-01 2 198948811 198948811 T C PLCL1 Silent p.F190F 0.11 TCGA-CA-6717-01 2 198950849 198950849 C T PLCL1 Missense_Mutation p.R870W 0.23 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 2 199011700 199011700 C T PLCL1 3'UTR 0.13 TCGA-CA-6717-01 2 200137245 200137245 T A SATB2 Missense_Mutation p.S631C 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 201171259 201171259 A G SPATS2L Intron 0.20 TCGA-CA-6717-01 2 201438032 201438032 A C SGOL2 Missense_Mutation p.K988T 0.18 deleterious(0.03) benign(0.273) TCGA-CA-6717-01 2 201470304 201470304 C A AOX1 Missense_Mutation p.S287Y 0.19 tolerated(0.1) possibly_damaging(0.853) TCGA-CA-6717-01 2 201474033 201474033 A C AOX1 Intron 0.16 TCGA-CA-6717-01 2 201682778 201682778 G A BZW1 Missense_Mutation p.R239Q 0.17 deleterious(0.05) benign(0.1) TCGA-CA-6717-01 2 201687829 201687829 T G BZW1 3'Flank 0.12 TCGA-CA-6717-01 2 201778118 201778118 A C ORC2 Missense_Mutation p.F516C 0.19 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 2 20178610 20178610 C T WDR35 Missense_Mutation p.R113Q 0.28 deleterious(0) benign(0.442) TCGA-CA-6717-01 2 202013770 202013770 C T CFLAR Missense_Mutation p.P236S 0.10 tolerated(0.27) benign(0.017) TCGA-CA-6717-01 2 202131427 202131427 A C CASP8 Missense_Mutation p.D132A 0.13 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 2 202149880 202149880 G T CASP8 Nonsense_Mutation p.E441* 0.18 TCGA-CA-6717-01 2 202153490 202153490 G T ALS2CR12 Missense_Mutation p.S409Y 0.21 deleterious(0.02) possibly_damaging(0.558) TCGA-CA-6717-01 2 202173902 202173902 G A ALS2CR12 Silent p.F249F 0.16 TCGA-CA-6717-01 2 202207126 202207126 G A ALS2CR12 Missense_Mutation p.A164V 0.11 tolerated(0.11) benign(0.14) TCGA-CA-6717-01 2 202352430 202352430 G A ALS2CR11 Nonsense_Mutation p.R1790* 0.09 TCGA-CA-6717-01 2 202400921 202400921 G T ALS2CR11 Missense_Mutation p.H443Q 0.13 tolerated(0.29) benign(0.065) TCGA-CA-6717-01 2 202412330 202412330 C A ALS2CR11 Silent p.L327L 0.17 TCGA-CA-6717-01 2 202488860 202488860 A C TMEM237 3'UTR 0.40 TCGA-CA-6717-01 2 202489002 202489002 C A TMEM237 Missense_Mutation p.E401D 0.11 tolerated(1) benign(0.002) TCGA-CA-6717-01 2 202523205 202523205 A C MPP4 Missense_Mutation p.F375C 0.10 deleterious(0.01) possibly_damaging(0.75) TCGA-CA-6717-01 2 202617894 202617894 G T ALS2 Missense_Mutation p.S571Y 0.10 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 2 202626040 202626040 T G ALS2 Missense_Mutation p.K226T 0.10 deleterious(0.03) possibly_damaging(0.722) TCGA-CA-6717-01 2 202626452 202626452 C T ALS2 Missense_Mutation p.V89I 0.17 tolerated(0.47) benign(0.001) TCGA-CA-6717-01 2 203149129 203149129 G A NOP58 Missense_Mutation p.R120H 0.08 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 2 203379664 203379664 G A BMPR2 Missense_Mutation p.E195K 0.28 tolerated(0.05) possibly_damaging(0.844) TCGA-CA-6717-01 2 203397451 203397451 C T BMPR2 Silent p.F424F 0.24 TCGA-CA-6717-01 2 203417590 203417590 C A BMPR2 Missense_Mutation p.S522Y 0.09 tolerated(0.19) benign(0.09) TCGA-CA-6717-01 2 203420727 203420727 A G BMPR2 Missense_Mutation p.N780S 0.30 deleterious(0.05) possibly_damaging(0.851) TCGA-CA-6717-01 2 203684408 203684408 G A ICA1L Intron 0.10 TCGA-CA-6717-01 2 203684549 203684549 T C ICA1L Missense_Mutation p.T145A 0.17 deleterious(0) possibly_damaging(0.906) TCGA-CA-6717-01 2 203933118 203933118 G A NBEAL1 Missense_Mutation p.R173Q 0.18 tolerated(0.09) benign(0.001) TCGA-CA-6717-01 2 203995185 203995185 G T NBEAL1 Nonsense_Mutation p.E1155* 0.27 TCGA-CA-6717-01 2 204078342 204078342 A C NBEAL1 Missense_Mutation p.K2650T 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 204111512 204111512 A G CYP20A1 Missense_Mutation p.S53G 0.09 tolerated(0.06) possibly_damaging(0.67) TCGA-CA-6717-01 2 204591474 204591474 A C CD28 Missense_Mutation p.K57N 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 204736138 204736138 G A CTLA4 Nonsense_Mutation p.W165* 0.09 TCGA-CA-6717-01 2 206166341 206166341 T C PARD3B Missense_Mutation p.L787S 0.10 tolerated(0.74) benign(0.017) TCGA-CA-6717-01 2 206610475 206610475 C T NRP2 Silent p.F549F 0.40 TCGA-CA-6717-01 2 206656972 206656972 A C NRP2 Missense_Mutation p.E818D 0.12 tolerated(0.47) benign(0.001) TCGA-CA-6717-01 2 206659576 206659576 C T NRP2 Missense_Mutation p.P864S 0.30 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 206874333 206874333 G A INO80D Silent p.S576S 0.12 TCGA-CA-6717-01 2 206997721 206997721 G A NDUFS1 Missense_Mutation p.R515W 0.15 deleterious(0.01) possibly_damaging(0.773) TCGA-CA-6717-01 2 207014616 207014616 A C NDUFS1 Missense_Mutation p.F77V 0.20 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 2 207026147 207026147 A G EEF1B2 Missense_Mutation p.D94G 0.10 tolerated(0.14) benign(0.056) TCGA-CA-6717-01 2 207040924 207040924 G A GPR1 Missense_Mutation p.L350F 0.09 tolerated_low_confidence(0.21) benign(0.035) TCGA-CA-6717-01 2 207170236 207170236 G T ZDBF2 Missense_Mutation p.K328N 0.19 deleterious(0.02) benign(0.403) TCGA-CA-6717-01 2 207174176 207174176 G T ZDBF2 Nonsense_Mutation p.G1642* 0.16 TCGA-CA-6717-01 2 207174561 207174561 G A ZDBF2 Missense_Mutation p.R1770K 0.09 tolerated(0.82) benign(0.067) TCGA-CA-6717-01 2 207431961 207431961 G A ADAM23 Missense_Mutation p.R470Q 0.23 tolerated(0.12) benign(0.158) TCGA-CA-6717-01 2 207622051 207622051 C A MDH1B Missense_Mutation p.K60N 0.10 tolerated(0.21) benign(0.003) TCGA-CA-6717-01 2 20845207 20845207 G A HS1BP3 Missense_Mutation p.R31W 0.19 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 2 208576618 208576618 C A CCNYL1 5'UTR 0.12 TCGA-CA-6717-01 2 209307092 209307092 G T PTH2R Nonsense_Mutation p.E139* 0.08 TCGA-CA-6717-01 2 210559248 210559248 C A MAP2 Nonsense_Mutation p.S785* 0.18 TCGA-CA-6717-01 2 210560934 210560934 C T MAP2 Missense_Mutation p.S1347F 0.12 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 2 210574837 210574837 C T MAP2 Silent p.V1644V 0.09 TCGA-CA-6717-01 2 210707090 210707090 C A UNC80 Missense_Mutation p.A1127D 0.31 probably_damaging(0.996) TCGA-CA-6717-01 2 210714282 210714282 C A UNC80 Missense_Mutation p.L1190M 0.08 probably_damaging(0.994) TCGA-CA-6717-01 2 210798543 210798543 T C UNC80 Intron 0.10 TCGA-CA-6717-01 2 210836944 210836944 C A UNC80 Missense_Mutation p.P2693H 0.08 probably_damaging(0.998) TCGA-CA-6717-01 2 210860172 210860172 G T UNC80 Missense_Mutation p.E3210D 0.21 benign(0.032) TCGA-CA-6717-01 2 210860354 210860354 G T UNC80 3'UTR 0.17 TCGA-CA-6717-01 2 210874431 210874431 G A RPE Missense_Mutation p.R58Q 0.15 deleterious(0.02) possibly_damaging(0.784) TCGA-CA-6717-01 2 210887724 210887724 T G KANSL1L Missense_Mutation p.E971D 0.16 deleterious_low_confidence(0.05) possibly_damaging(0.749) TCGA-CA-6717-01 2 210889834 210889834 T C KANSL1L Missense_Mutation p.N853S 0.08 tolerated(0.15) benign(0.413) TCGA-CA-6717-01 2 210940463 210940463 T C KANSL1L Missense_Mutation p.D523G 0.08 deleterious(0.03) benign(0.381) TCGA-CA-6717-01 2 211057584 211057584 G A ACADL Silent p.Y381Y 0.15 TCGA-CA-6717-01 2 211459300 211459300 G A CPS1 Silent p.P417P 0.19 TCGA-CA-6717-01 2 211471635 211471635 G A CPS1 Missense_Mutation p.R727Q 0.33 deleterious(0) probably_damaging(0.945) TCGA-CA-6717-01 2 211513196 211513196 G T CPS1 Splice_Site p.X1119_splice 0.10 TCGA-CA-6717-01 2 21224767 21224767 G T APOB Nonsense_Mutation p.Y4509* 0.14 TCGA-CA-6717-01 2 212248569 212248569 G A ERBB4 Missense_Mutation p.A1233V 0.07 tolerated(0.51) benign(0.001) TCGA-CA-6717-01 2 212251756 212251756 A C ERBB4 Missense_Mutation p.I1101M 0.08 tolerated(0.21) benign(0.005) TCGA-CA-6717-01 2 212252710 212252710 A G ERBB4 Missense_Mutation p.I1048T 0.09 tolerated(0.84) benign(0.006) TCGA-CA-6717-01 2 21225325 21225325 A C APOB Silent p.T4323T 0.29 TCGA-CA-6717-01 2 21225329 21225329 A C APOB Missense_Mutation p.F4322C 0.11 benign(0.221) TCGA-CA-6717-01 2 21225803 21225803 A G APOB Missense_Mutation p.F4164S 0.10 benign(0) TCGA-CA-6717-01 2 21228199 21228199 G A APOB Silent p.I3847I 0.10 TCGA-CA-6717-01 2 21229232 21229232 G A APOB Missense_Mutation p.S3503L 0.10 benign(0.005) TCGA-CA-6717-01 2 21230257 21230257 G T APOB Missense_Mutation p.F3161L 0.23 benign(0.007) TCGA-CA-6717-01 2 21232680 21232680 T G APOB Missense_Mutation p.I2354L 0.10 benign(0.044) TCGA-CA-6717-01 2 21233589 21233589 C A APOB Nonsense_Mutation p.E2051* 0.09 TCGA-CA-6717-01 2 21234967 21234967 G T APOB Missense_Mutation p.F1591L 0.20 benign(0.005) TCGA-CA-6717-01 2 21235048 21235048 C A APOB Missense_Mutation p.E1564D 0.08 probably_damaging(0.978) TCGA-CA-6717-01 2 21235092 21235092 G T APOB Missense_Mutation p.L1550M 0.13 probably_damaging(0.997) TCGA-CA-6717-01 2 21250716 21250716 G T APOB Nonsense_Mutation p.S684* 0.13 TCGA-CA-6717-01 2 21256304 21256304 C A APOB Nonsense_Mutation p.E331* 0.14 TCGA-CA-6717-01 2 21256328 21256328 C T APOB Missense_Mutation p.E323K 0.11 possibly_damaging(0.702) TCGA-CA-6717-01 2 213872107 213872107 G A IKZF2 Nonsense_Mutation p.R520* 0.16 TCGA-CA-6717-01 2 215645684 215645684 T G BARD1 Missense_Mutation p.K305T 0.09 tolerated(0.18) benign(0.045) TCGA-CA-6717-01 2 215646176 215646176 T G BARD1 Missense_Mutation p.N141T 0.10 tolerated(0.1) benign(0.199) TCGA-CA-6717-01 2 215809778 215809778 C A ABCA12 Missense_Mutation p.K2430N 0.11 deleterious(0) possibly_damaging(0.732) TCGA-CA-6717-01 2 215823086 215823086 T C ABCA12 Missense_Mutation p.E2011G 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 215838683 215838683 T C ABCA12 Missense_Mutation p.E1851G 0.07 tolerated(0.29) benign(0.006) TCGA-CA-6717-01 2 215840583 215840583 A G ABCA12 Silent p.N1769N 0.18 TCGA-CA-6717-01 2 215843079 215843079 C T ABCA12 Missense_Mutation p.D1697N 0.07 tolerated(0.1) possibly_damaging(0.567) TCGA-CA-6717-01 2 215865688 215865688 T G ABCA12 Missense_Mutation p.N974H 0.20 tolerated(0.14) benign(0.005) TCGA-CA-6717-01 2 215866462 215866462 C A ABCA12 Splice_Site p.X895_splice 0.22 TCGA-CA-6717-01 2 215890473 215890473 C T ABCA12 Missense_Mutation p.R404Q 0.14 tolerated(0.73) benign(0.001) TCGA-CA-6717-01 2 215914460 215914460 C A ABCA12 Missense_Mutation p.D195Y 0.08 tolerated(0.56) benign(0) TCGA-CA-6717-01 2 215928927 215928927 C T ABCA12 Missense_Mutation p.R60Q 0.18 deleterious(0) probably_damaging(0.943) TCGA-CA-6717-01 2 216002956 216002956 T G ABCA12 5'UTR 0.29 TCGA-CA-6717-01 2 216177199 216177199 G T ATIC Intron 0.21 TCGA-CA-6717-01 2 216271871 216271871 T C FN1 Missense_Mutation p.T898A 0.25 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 216272031 216272031 G A FN1 Silent p.V844V 0.12 TCGA-CA-6717-01 2 216273098 216273098 C T FN1 Missense_Mutation p.R784Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 216288244 216288244 C T FN1 Missense_Mutation p.V408I 0.15 tolerated(0.11) benign(0.026) TCGA-CA-6717-01 2 216995653 216995653 G T XRCC5 Missense_Mutation p.M331I 0.25 deleterious(0) possibly_damaging(0.768) TCGA-CA-6717-01 2 217012972 217012972 T C XRCC5 Missense_Mutation p.V548A 0.09 tolerated(0.52) benign(0.103) TCGA-CA-6717-01 2 217279653 217279653 C A SMARCAL1 Missense_Mutation p.L76I 0.10 tolerated_low_confidence(0.42) benign(0.001) TCGA-CA-6717-01 2 217288371 217288371 A C SMARCAL1 Missense_Mutation p.K371T 0.21 tolerated(0.09) probably_damaging(0.976) TCGA-CA-6717-01 2 218674598 218674598 C T TNS1 Missense_Mutation p.V1637I 0.15 deleterious(0) benign(0.019) TCGA-CA-6717-01 2 218755688 218755688 C A TNS1 Missense_Mutation p.R163I 0.12 deleterious(0.03) benign(0.365) TCGA-CA-6717-01 2 218757728 218757728 C T TNS1 Missense_Mutation p.R117Q 0.17 deleterious(0.04) benign(0.037) TCGA-CA-6717-01 2 218858 218858 G A SH3YL1 Nonsense_Mutation p.R328* 0.12 TCGA-CA-6717-01 2 218940073 218940073 C A RUFY4 Silent p.I306I 0.08 TCGA-CA-6717-01 2 219029003 219029003 T G CXCR1 Missense_Mutation p.N311T 0.16 deleterious(0) benign(0.101) TCGA-CA-6717-01 2 219252665 219252665 C T SLC11A1 Missense_Mutation p.S261L 0.24 deleterious(0) possibly_damaging(0.869) TCGA-CA-6717-01 2 219411755 219411755 A G USP37 Silent p.L163L 0.11 TCGA-CA-6717-01 2 219509123 219509123 A G ZNF142 Missense_Mutation p.S706P 0.10 tolerated(1) benign(0.307) TCGA-CA-6717-01 2 219563633 219563633 G T STK36 Missense_Mutation p.E1122D 0.18 tolerated(0.17) benign(0.007) TCGA-CA-6717-01 2 219693248 219693248 A C PRKAG3 Missense_Mutation p.F237V 0.11 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 2 219856938 219856938 G A CRYBA2 Silent p.F63F 0.24 TCGA-CA-6717-01 2 219869159 219869159 C A CCDC108 Missense_Mutation p.K1690N 0.22 tolerated(0.09) possibly_damaging(0.617) TCGA-CA-6717-01 2 219875716 219875716 A C CCDC108 Missense_Mutation p.I1320M 0.19 deleterious(0) possibly_damaging(0.771) TCGA-CA-6717-01 2 219894734 219894734 A C CCDC108 Missense_Mutation p.L453R 0.22 tolerated(0.06) benign(0.067) TCGA-CA-6717-01 2 219896346 219896346 G A CCDC108 Missense_Mutation p.A227V 0.12 tolerated(0.11) benign(0.038) TCGA-CA-6717-01 2 219900348 219900348 C A CCDC108 Missense_Mutation p.K132N 0.11 deleterious(0.01) possibly_damaging(0.754) TCGA-CA-6717-01 2 219903641 219903641 C A CCDC108 Missense_Mutation p.A44S 0.15 tolerated_low_confidence(0.05) benign(0.003) TCGA-CA-6717-01 2 220083061 220083061 A C ABCB6 Missense_Mutation p.V112G 0.14 deleterious(0) benign(0.04) TCGA-CA-6717-01 2 220100454 220100454 A C ANKZF1 Missense_Mutation p.M610L 0.10 tolerated(0.05) benign(0.074) TCGA-CA-6717-01 2 220104750 220104750 A G GLB1L Missense_Mutation p.F205L 0.29 tolerated(0.05) probably_damaging(0.978) TCGA-CA-6717-01 2 220115044 220115044 A C TUBA4A 3'UTR 0.21 TCGA-CA-6717-01 2 220136809 220136809 G T TUBA4B RNA 0.23 TCGA-CA-6717-01 2 220158916 220158916 C A PTPRN Intron 0.12 TCGA-CA-6717-01 2 220172208 220172208 G T PTPRN Missense_Mutation p.L80I 0.25 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 2 220246092 220246092 G A DNPEP Nonsense_Mutation p.R402* 0.16 TCGA-CA-6717-01 2 220370394 220370394 C T GMPPA Intron 0.15 TCGA-CA-6717-01 2 220401791 220401791 G A ASIC4 Silent p.E519E 0.43 TCGA-CA-6717-01 2 220405770 220405770 C T CHPF Silent p.L322L 0.19 TCGA-CA-6717-01 2 220412279 220412279 C T TMEM198 Missense_Mutation p.S73L 0.21 deleterious(0.04) possibly_damaging(0.651) TCGA-CA-6717-01 2 220428117 220428117 G A OBSL1 Silent p.V880V 0.47 TCGA-CA-6717-01 2 220437278 220437278 G T INHA Missense_Mutation p.R61I 0.35 deleterious(0) probably_damaging(0.96) TCGA-CA-6717-01 2 223085022 223085022 C A PAX3 Missense_Mutation p.S337I 0.07 deleterious_low_confidence(0) possibly_damaging(0.474) TCGA-CA-6717-01 2 223423569 223423569 C T SGPP2 Silent p.C384C 0.13 TCGA-CA-6717-01 2 223436480 223436480 T G FARSB 3'UTR 0.08 TCGA-CA-6717-01 2 223574595 223574595 C T MOGAT1 Missense_Mutation p.L332F 0.14 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 2 223918633 223918633 G T KCNE4 3'UTR 0.13 TCGA-CA-6717-01 2 223920147 223920147 A G KCNE4 3'UTR 0.21 TCGA-CA-6717-01 2 224462168 224462168 C A SCG2 Missense_Mutation p.K611N 0.18 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CA-6717-01 2 224462819 224462819 G T SCG2 Silent p.I394I 0.18 TCGA-CA-6717-01 2 225681375 225681375 A C DOCK10 Missense_Mutation p.F1108C 0.09 deleterious(0) probably_damaging(0.95) TCGA-CA-6717-01 2 225729722 225729722 T C DOCK10 Missense_Mutation p.N447S 0.24 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 2 226491789 226491789 G A NYAP2 Missense_Mutation p.R592Q 0.11 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-CA-6717-01 2 227872078 227872078 T C COL4A4 Missense_Mutation p.K1679R 0.14 unknown(0) TCGA-CA-6717-01 2 227919411 227919411 C A COL4A4 Missense_Mutation p.R920I 0.15 unknown(0) TCGA-CA-6717-01 2 228172586 228172586 T C COL4A3 Silent p.F1471F 0.08 TCGA-CA-6717-01 2 228194386 228194386 T C MFF 5'UTR 0.09 TCGA-CA-6717-01 2 228221772 228221772 T G MFF Missense_Mutation p.V323G 0.12 deleterious(0) possibly_damaging(0.903) TCGA-CA-6717-01 2 228681933 228681933 A G CCL20 3'UTR 0.42 TCGA-CA-6717-01 2 228755988 228755988 A C DAW1 Silent p.I92I 0.26 TCGA-CA-6717-01 2 228881836 228881836 G T SPHKAP Missense_Mutation p.P1245Q 0.15 tolerated(0.07) possibly_damaging(0.713) TCGA-CA-6717-01 2 228882368 228882368 G A SPHKAP Missense_Mutation p.R1068W 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 228882469 228882469 G T SPHKAP Missense_Mutation p.S1034Y 0.15 deleterious(0.01) probably_damaging(0.95) TCGA-CA-6717-01 2 228884601 228884601 A C SPHKAP Nonsense_Mutation p.Y323* 0.23 TCGA-CA-6717-01 2 230223123 230223123 A C DNER 3'UTR 0.35 TCGA-CA-6717-01 2 230664065 230664065 G A TRIP12 Missense_Mutation p.P1006S 0.08 tolerated(0.14) possibly_damaging(0.604) TCGA-CA-6717-01 2 230723870 230723870 C T TRIP12 Silent p.A173A 0.10 TCGA-CA-6717-01 2 231103481 231103481 T G SP140 Intron 0.29 TCGA-CA-6717-01 2 231191993 231191993 T C SP140L Silent p.G3G 0.12 TCGA-CA-6717-01 2 231223843 231223843 A C SP140L Missense_Mutation p.K145N 0.09 tolerated(0.23) benign(0) TCGA-CA-6717-01 2 231308897 231308897 C A SP100 Missense_Mutation p.S92Y 0.14 tolerated(0.94) possibly_damaging(0.781) TCGA-CA-6717-01 2 231655630 231655630 T G CAB39 Missense_Mutation p.I53S 0.12 tolerated(0.09) benign(0.299) TCGA-CA-6717-01 2 231663457 231663457 G A CAB39 Missense_Mutation p.E138K 0.08 deleterious(0.01) benign(0.175) TCGA-CA-6717-01 2 231663565 231663565 G A CAB39 Missense_Mutation p.E174K 0.08 deleterious(0) benign(0.31) TCGA-CA-6717-01 2 231867455 231867455 A G SPATA3 Missense_Mutation p.N177S 0.11 deleterious(0.03) possibly_damaging(0.486) TCGA-CA-6717-01 2 231936950 231936950 G T PSMD1 Missense_Mutation p.E234D 0.09 tolerated(0.54) benign(0.005) TCGA-CA-6717-01 2 231973376 231973376 C T HTR2B Missense_Mutation p.R434Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.73) TCGA-CA-6717-01 2 231973722 231973722 C T HTR2B Missense_Mutation p.E319K 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 232028374 232028374 A G PSMD1 Missense_Mutation p.N805S 0.22 tolerated(0.06) possibly_damaging(0.589) TCGA-CA-6717-01 2 232373857 232373857 T A LINC00471 RNA 0.07 TCGA-CA-6717-01 2 232458084 232458084 C A C2orf57 Missense_Mutation p.P141H 0.12 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 2 232601992 232601992 G A PDE6D Silent p.F92F 0.15 TCGA-CA-6717-01 2 233199191 233199191 C T DIS3L2 Silent p.F757F 0.13 TCGA-CA-6717-01 2 233199397 233199397 C T DIS3L2 Silent p.F782F 0.26 TCGA-CA-6717-01 2 233274360 233274360 C T ALPPL2 Silent p.F459F 0.20 TCGA-CA-6717-01 2 233414439 233414439 T G TIGD1 Missense_Mutation p.N52H 0.19 tolerated(0.09) probably_damaging(0.973) TCGA-CA-6717-01 2 233635843 233635843 A G KCNJ13 Missense_Mutation p.V77A 0.11 tolerated(0.26) benign(0.007) TCGA-CA-6717-01 2 233721536 233721536 A C GIGYF2 Missense_Mutation p.N1310T 0.08 unknown(0) TCGA-CA-6717-01 2 234172700 234172700 G T ATG16L1 Missense_Mutation p.M126I 0.10 tolerated(0.18) benign(0.016) TCGA-CA-6717-01 2 234198998 234198998 C T ATG16L1 Nonsense_Mutation p.R477* 0.23 TCGA-CA-6717-01 2 234299108 234299108 A C DGKD Missense_Mutation p.K109N 0.23 deleterious(0.03) probably_damaging(0.99) TCGA-CA-6717-01 2 234429693 234429693 A C USP40 Missense_Mutation p.L768V 0.17 tolerated(0.43) benign(0.005) TCGA-CA-6717-01 2 234449380 234449380 G T USP40 Silent p.G377G 0.19 TCGA-CA-6717-01 2 234581409 234581409 T C UGT1A9 Missense_Mutation p.C277R 0.13 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 2 234737679 234737679 C T MROH2A Silent p.F1469F 0.24 TCGA-CA-6717-01 2 234741252 234741252 A G MROH2A Missense_Mutation p.H1622R 0.10 tolerated(0.23) benign(0.012) TCGA-CA-6717-01 2 234775757 234775757 T C MSL3P1 RNA 0.09 TCGA-CA-6717-01 2 235951000 235951000 C T SH3BP4 Silent p.F529F 0.25 TCGA-CA-6717-01 2 236708095 236708095 G A AGAP1 Missense_Mutation p.D296N 0.14 tolerated(0.11) benign(0.006) TCGA-CA-6717-01 2 237032689 237032689 C T AGAP1 Missense_Mutation p.L833F 0.11 tolerated(0.14) probably_damaging(0.993) TCGA-CA-6717-01 2 237402457 237402457 A G IQCA1 Missense_Mutation p.I137T 0.13 tolerated(0.17) benign(0.01) TCGA-CA-6717-01 2 238277545 238277545 C T COL6A3 Missense_Mutation p.E1521K 0.13 probably_damaging(0.965) TCGA-CA-6717-01 2 238287787 238287787 C A COL6A3 Missense_Mutation p.M663I 0.13 benign(0.105) TCGA-CA-6717-01 2 238296321 238296321 G A COL6A3 Missense_Mutation p.R406C 0.08 probably_damaging(0.987) TCGA-CA-6717-01 2 238303381 238303381 T G COL6A3 Missense_Mutation p.K186N 0.26 possibly_damaging(0.83) TCGA-CA-6717-01 2 238672150 238672150 G T LRRFIP1 Missense_Mutation p.Q598H 0.10 deleterious(0.05) probably_damaging(0.984) TCGA-CA-6717-01 2 238672857 238672857 A G LRRFIP1 3'UTR 0.17 TCGA-CA-6717-01 2 238728988 238728988 T G RBM44 Nonsense_Mutation p.L637* 0.09 TCGA-CA-6717-01 2 238729878 238729878 T C RBM44 Missense_Mutation p.F694S 0.18 deleterious(0) possibly_damaging(0.894) TCGA-CA-6717-01 2 239007882 239007882 C A SCLY 3'UTR 0.28 TCGA-CA-6717-01 2 239033969 239033969 C T ESPNL Missense_Mutation p.T349M 0.09 tolerated(0.07) benign(0.28) TCGA-CA-6717-01 2 239133756 239133756 C A AC016757.3 3'Flank 0.19 TCGA-CA-6717-01 2 23916296 23916296 C A KLHL29 Missense_Mutation p.F480L 0.19 tolerated(1) benign(0.006) TCGA-CA-6717-01 2 239168626 239168626 C A PER2 Missense_Mutation p.K537N 0.15 deleterious(0.04) possibly_damaging(0.884) TCGA-CA-6717-01 2 239177587 239177587 C A PER2 Missense_Mutation p.E267D 0.16 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 2 239234573 239234573 G A TRAF3IP1 Missense_Mutation p.E106K 0.21 deleterious(0) possibly_damaging(0.585) TCGA-CA-6717-01 2 239253146 239253146 G T TRAF3IP1 Nonsense_Mutation p.E390* 0.19 TCGA-CA-6717-01 2 24011396 24011396 C T ATAD2B Missense_Mutation p.R921Q 0.09 tolerated(0.25) benign(0.246) TCGA-CA-6717-01 2 24033337 24033337 C T ATAD2B Missense_Mutation p.R768H 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 2 24042732 24042732 C A ATAD2B Nonsense_Mutation p.E718* 0.12 TCGA-CA-6717-01 2 240500416 240500416 G A AC079612.1 Silent p.S99S 0.31 TCGA-CA-6717-01 2 240500426 240500426 C A AC079612.1 Missense_Mutation p.L103I 0.15 possibly_damaging(0.567) TCGA-CA-6717-01 2 24103626 24103626 C A ATAD2B Splice_Site p.X262_splice 0.27 TCGA-CA-6717-01 2 241922532 241922532 G T AC104809.2 RNA 0.33 TCGA-CA-6717-01 2 242046027 242046027 C T PASK Missense_Mutation p.G1316D 0.26 tolerated_low_confidence(0.23) benign(0.021) TCGA-CA-6717-01 2 242122143 242122143 C T PPP1R7 Missense_Mutation p.R330W 0.46 tolerated(0.05) possibly_damaging(0.841) TCGA-CA-6717-01 2 242430494 242430494 G T FARP2 Missense_Mutation p.E841D 0.23 tolerated(0.43) benign(0.007) TCGA-CA-6717-01 2 242590689 242590689 G A ATG4B Silent p.E41E 0.23 TCGA-CA-6717-01 2 24358023 24358023 A G FAM228B Missense_Mutation p.Q45R 0.08 tolerated(0.21) benign(0.013) TCGA-CA-6717-01 2 24406191 24406191 G T FAM228A Missense_Mutation p.R67I 0.12 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 2 24471549 24471549 T G ITSN2 Missense_Mutation p.L1079F 0.14 deleterious(0) unknown(0) TCGA-CA-6717-01 2 24521632 24521632 G A ITSN2 Missense_Mutation p.R466W 0.13 deleterious(0) unknown(0) TCGA-CA-6717-01 2 24881611 24881611 C T NCOA1 Missense_Mutation p.S22L 0.23 tolerated(0.24) benign(0.041) TCGA-CA-6717-01 2 25039588 25039588 A G CENPO Missense_Mutation p.K223R 0.12 tolerated(0.19) benign(0.055) TCGA-CA-6717-01 2 25358475 25358475 G A EFR3B Missense_Mutation p.R484H 0.28 deleterious(0) probably_damaging(0.935) TCGA-CA-6717-01 2 25360228 25360228 A C EFR3B Silent p.R527R 0.26 TCGA-CA-6717-01 2 25384114 25384114 C T POMC Missense_Mutation p.E214K 0.21 tolerated(0.29) benign(0.167) TCGA-CA-6717-01 2 25536839 25536839 G A DNMT3A Silent p.P5P 0.21 TCGA-CA-6717-01 2 25965213 25965213 G T ASXL2 Silent p.I1331I 0.10 TCGA-CA-6717-01 2 25990486 25990486 C A ASXL2 Missense_Mutation p.K247N 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 26477181 26477181 G T HADHB Missense_Mutation p.R20I 0.10 deleterious_low_confidence(0.02) benign(0.089) TCGA-CA-6717-01 2 26534132 26534132 C T GPR113 Missense_Mutation p.A822T 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 26647236 26647236 G T DRC1 Nonsense_Mutation p.E152* 0.09 TCGA-CA-6717-01 2 26647287 26647287 G T DRC1 Nonsense_Mutation p.E169* 0.14 TCGA-CA-6717-01 2 26677530 26677530 G A DRC1 Silent p.P645P 0.23 TCGA-CA-6717-01 2 26690265 26690265 C T OTOF Missense_Mutation p.E1399K 0.19 tolerated(0.4) benign(0.005) TCGA-CA-6717-01 2 26693545 26693545 C T OTOF Silent p.A1313A 0.15 TCGA-CA-6717-01 2 26698245 26698245 G T OTOF Silent p.I1036I 0.08 TCGA-CA-6717-01 2 26707477 26707477 G A OTOF Missense_Mutation p.A357V 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 26951147 26951147 T C KCNK3 Missense_Mutation p.V299A 0.17 tolerated(0.46) benign(0.01) TCGA-CA-6717-01 2 27015630 27015630 G T CENPA Nonsense_Mutation p.E73* 0.09 TCGA-CA-6717-01 2 27275783 27275783 C T AGBL5 Intron 0.44 TCGA-CA-6717-01 2 27305906 27305906 G T EMILIN1 Missense_Mutation p.Q489H 0.20 possibly_damaging(0.613) TCGA-CA-6717-01 2 27310214 27310214 G T KHK Missense_Mutation p.E29D 0.31 tolerated(1) benign(0) TCGA-CA-6717-01 2 27375569 27375569 G A TCF23 Missense_Mutation p.R160Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 27456970 27456970 C T CAD Missense_Mutation p.A1165V 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 27499691 27499691 A G DNAJC5G Missense_Mutation p.D32G 0.12 deleterious(0) benign(0.259) TCGA-CA-6717-01 2 27663553 27663553 T G NRBP1 Missense_Mutation p.F393V 0.19 deleterious(0) possibly_damaging(0.718) TCGA-CA-6717-01 2 27684644 27684644 G A IFT172 Silent p.I725I 0.11 TCGA-CA-6717-01 2 27685571 27685571 T C IFT172 Silent p.E704E 0.10 TCGA-CA-6717-01 2 27731052 27731052 C A GCKR Silent p.L452L 0.11 TCGA-CA-6717-01 2 27800737 27800737 C A C2orf16 Missense_Mutation p.S433Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 2 27801142 27801142 T G C2orf16 Nonsense_Mutation p.L568* 0.17 TCGA-CA-6717-01 2 27801184 27801184 T C C2orf16 Missense_Mutation p.L582S 0.20 tolerated(0.07) benign(0.001) TCGA-CA-6717-01 2 27802820 27802820 T C C2orf16 Silent p.C1127C 0.12 TCGA-CA-6717-01 2 27803369 27803369 A G C2orf16 Silent p.T1310T 0.16 TCGA-CA-6717-01 2 27804595 27804595 G A C2orf16 Missense_Mutation p.R1719H 0.17 tolerated(0.53) benign(0.034) TCGA-CA-6717-01 2 27806530 27806530 G A ZNF512 Silent p.S12S 0.11 TCGA-CA-6717-01 2 27851565 27851565 T C CCDC121 Silent p.P22P 0.11 TCGA-CA-6717-01 2 27855513 27855513 T G GPN1 Missense_Mutation p.I123S 0.17 deleterious(0) possibly_damaging(0.853) TCGA-CA-6717-01 2 27885117 27885117 C T SUPT7L 5'UTR 0.21 TCGA-CA-6717-01 2 28999735 28999735 G A PPP1CB Missense_Mutation p.G24E 0.09 deleterious_low_confidence(0) possibly_damaging(0.495) TCGA-CA-6717-01 2 29222088 29222088 G T FAM179A Nonsense_Mutation p.E61* 0.30 TCGA-CA-6717-01 2 29245074 29245074 G A FAM179A Missense_Mutation p.E471K 0.11 deleterious(0.04) possibly_damaging(0.576) TCGA-CA-6717-01 2 29245108 29245108 T C FAM179A Missense_Mutation p.L482S 0.11 deleterious(0.05) benign(0.103) TCGA-CA-6717-01 2 29519819 29519819 G A ALK Silent p.V584V 0.11 TCGA-CA-6717-01 2 29541201 29541201 A C ALK Missense_Mutation p.F539C 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6717-01 2 29917797 29917797 G A ALK Missense_Mutation p.R291C 0.21 tolerated_low_confidence(0.05) possibly_damaging(0.877) TCGA-CA-6717-01 2 30480455 30480455 G A LBH Missense_Mutation p.E96K 0.10 tolerated_low_confidence(0.13) benign(0.002) TCGA-CA-6717-01 2 31133827 31133827 G A GALNT14 Silent p.I538I 0.16 TCGA-CA-6717-01 2 31165143 31165143 G A GALNT14 Silent p.F290F 0.23 TCGA-CA-6717-01 2 31399485 31399485 C T CAPN14 Missense_Mutation p.D666N 0.08 tolerated(0.09) probably_damaging(0.929) TCGA-CA-6717-01 2 31425945 31425945 C T CAPN14 Missense_Mutation p.G96R 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 31483461 31483461 C T EHD3 Silent p.I196I 0.10 TCGA-CA-6717-01 2 31572580 31572580 G A XDH Missense_Mutation p.R981W 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 31606694 31606694 C A XDH Missense_Mutation p.K271N 0.27 deleterious(0.02) probably_damaging(0.99) TCGA-CA-6717-01 2 32339825 32339825 T G SPAST Silent p.P267P 0.13 TCGA-CA-6717-01 2 32461357 32461357 T G NLRC4 Missense_Mutation p.N858T 0.11 deleterious(0.01) probably_damaging(0.923) TCGA-CA-6717-01 2 32475204 32475204 C T NLRC4 Missense_Mutation p.A577T 0.14 tolerated(0.58) benign(0.006) TCGA-CA-6717-01 2 32477694 32477694 A C NLRC4 Missense_Mutation p.V19G 0.10 deleterious(0) benign(0.443) TCGA-CA-6717-01 2 32530612 32530612 G T YIPF4 Nonsense_Mutation p.E218* 0.28 TCGA-CA-6717-01 2 32696194 32696194 T G BIRC6 Splice_Site p.X2198_splice 0.10 TCGA-CA-6717-01 2 32703801 32703801 A G BIRC6 Silent p.G2389G 0.14 TCGA-CA-6717-01 2 32733163 32733163 G A BIRC6 Missense_Mutation p.E3273K 0.11 possibly_damaging(0.846) TCGA-CA-6717-01 2 32740281 32740281 A C BIRC6 Missense_Mutation p.N3598T 0.11 benign(0.013) TCGA-CA-6717-01 2 32855589 32855589 G T TTC27 Splice_Site p.X30_splice 0.33 TCGA-CA-6717-01 2 33780626 33780626 A C RASGRP3 Missense_Mutation p.K524T 0.17 deleterious(0) possibly_damaging(0.463) TCGA-CA-6717-01 2 36623833 36623833 C A CRIM1 Silent p.I136I 0.14 TCGA-CA-6717-01 2 36805744 36805744 C T FEZ2 Missense_Mutation p.G300D 0.09 tolerated(0.34) probably_damaging(1) TCGA-CA-6717-01 2 36986173 36986173 T G VIT Missense_Mutation p.S157R 0.17 tolerated(0.06) possibly_damaging(0.568) TCGA-CA-6717-01 2 37014325 37014325 C T VIT Missense_Mutation p.R322W 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 37028483 37028483 G A VIT Silent p.T366T 0.17 TCGA-CA-6717-01 2 37096762 37096762 C A STRN Missense_Mutation p.L478F 0.09 deleterious(0) possibly_damaging(0.483) TCGA-CA-6717-01 2 37241097 37241097 G T HEATR5B Missense_Mutation p.L1391I 0.10 deleterious(0) probably_damaging(0.97) TCGA-CA-6717-01 2 37255908 37255908 A G HEATR5B Silent p.L1173L 0.09 TCGA-CA-6717-01 2 37292094 37292094 C T HEATR5B Missense_Mutation p.S458N 0.17 tolerated(0.07) possibly_damaging(0.535) TCGA-CA-6717-01 2 37310454 37310454 T G HEATR5B Missense_Mutation p.K35T 0.14 deleterious(0.03) benign(0.26) TCGA-CA-6717-01 2 37374952 37374952 C A EIF2AK2 5'UTR 0.14 TCGA-CA-6717-01 2 37414519 37414519 A C SULT6B1 Missense_Mutation p.C59W 0.13 deleterious(0.04) probably_damaging(0.962) TCGA-CA-6717-01 2 3743322 3743322 G A ALLC Missense_Mutation p.R176Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 37455987 37455987 C A CEBPZ Nonsense_Mutation p.E117* 0.27 TCGA-CA-6717-01 2 37456066 37456066 A G CEBPZ Silent p.N90N 0.13 TCGA-CA-6717-01 2 37474620 37474620 C A NDUFAF7 Missense_Mutation p.H320N 0.10 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 2 37475291 37475291 A C NDUFAF7 Missense_Mutation p.K375T 0.12 tolerated(0.12) benign(0.15) TCGA-CA-6717-01 2 37520397 37520397 G T PRKD3 Missense_Mutation p.F102L 0.09 tolerated(0.32) benign(0.042) TCGA-CA-6717-01 2 37586979 37586979 A G QPCT Missense_Mutation p.D175G 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 37599848 37599848 C T QPCT Missense_Mutation p.P322S 0.20 tolerated(0.42) benign(0.161) TCGA-CA-6717-01 2 38244360 38244360 T C RMDN2 Intron 0.13 TCGA-CA-6717-01 2 38298080 38298080 C T CYP1B1 Missense_Mutation p.E473K 0.34 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 2 38956730 38956730 G A GALM Missense_Mutation p.D223N 0.19 deleterious(0.01) probably_damaging(0.928) TCGA-CA-6717-01 2 39088167 39088167 G T DHX57 Missense_Mutation p.S462Y 0.13 tolerated(0.07) benign(0.005) TCGA-CA-6717-01 2 39088970 39088970 G T DHX57 Missense_Mutation p.F194L 0.20 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 39178257 39178257 G T ARHGEF33 Missense_Mutation p.D350Y 0.12 deleterious(0) possibly_damaging(0.904) TCGA-CA-6717-01 2 39499511 39499511 A C MAP4K3 Nonsense_Mutation p.L629* 0.19 TCGA-CA-6717-01 2 39944533 39944533 C T TMEM178A 3'UTR 0.14 TCGA-CA-6717-01 2 40342494 40342494 G T SLC8A1 Silent p.R941R 0.23 TCGA-CA-6717-01 2 40366566 40366566 G A SLC8A1 Silent p.F840F 0.17 TCGA-CA-6717-01 2 40656493 40656493 G T SLC8A1 Missense_Mutation p.L310M 0.09 tolerated(0.28) benign(0.08) TCGA-CA-6717-01 2 42671253 42671253 C A KCNG3 Missense_Mutation p.D378Y 0.13 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 2 43783406 43783406 T G THADA Intron 0.27 TCGA-CA-6717-01 2 43793491 43793491 C T THADA Intron 0.18 TCGA-CA-6717-01 2 43793508 43793508 T G THADA Intron 0.21 TCGA-CA-6717-01 2 43919774 43919774 A C PLEKHH2 Missense_Mutation p.Q103P 0.22 tolerated(0.09) possibly_damaging(0.616) TCGA-CA-6717-01 2 43927300 43927300 G A PLEKHH2 Silent p.S401S 0.10 TCGA-CA-6717-01 2 43937231 43937231 A C PLEKHH2 Missense_Mutation p.K690T 0.12 deleterious(0.01) benign(0.118) TCGA-CA-6717-01 2 43947871 43947871 C T PLEKHH2 Missense_Mutation p.R842W 0.10 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 44021938 44021938 C A DYNC2LI1 Intron 0.15 TCGA-CA-6717-01 2 44078767 44078767 C A ABCG8 Missense_Mutation p.H123N 0.10 tolerated(0.29) benign(0.008) TCGA-CA-6717-01 2 44078796 44078796 C A ABCG8 Silent p.I132I 0.17 TCGA-CA-6717-01 2 44104775 44104775 G A ABCG8 Missense_Mutation p.R611K 0.11 tolerated(0.29) benign(0.028) TCGA-CA-6717-01 2 44121753 44121753 A G LRPPRC Missense_Mutation p.S1306P 0.11 tolerated(0.06) possibly_damaging(0.616) TCGA-CA-6717-01 2 44187743 44187743 A C LRPPRC Missense_Mutation p.F507V 0.28 tolerated(0.11) possibly_damaging(0.507) TCGA-CA-6717-01 2 44459512 44459512 A C PPM1B 3'Flank 0.10 TCGA-CA-6717-01 2 44539866 44539866 G A SLC3A1 Missense_Mutation p.A492T 0.16 tolerated(0.75) benign(0) TCGA-CA-6717-01 2 44547380 44547380 G T SLC3A1 Missense_Mutation p.D554Y 0.25 deleterious(0.01) benign(0.091) TCGA-CA-6717-01 2 44556236 44556236 G A PREPL Missense_Mutation p.P457S 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 45774683 45774683 T G SRBD1 Missense_Mutation p.K582Q 0.13 tolerated(0.1) possibly_damaging(0.459) TCGA-CA-6717-01 2 45801811 45801811 T G SRBD1 Missense_Mutation p.D375A 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 2 45879289 45879289 G A PRKCE Missense_Mutation p.S17N 0.14 tolerated(0.24) benign(0.002) TCGA-CA-6717-01 2 46583366 46583366 C A EPAS1 Missense_Mutation p.F98L 0.26 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 46842208 46842208 C A PIGF Missense_Mutation p.E32D 0.11 tolerated(0.56) benign(0.004) TCGA-CA-6717-01 2 46986632 46986632 T G SOCS5 Missense_Mutation p.N321K 0.12 tolerated(0.12) benign(0.007) TCGA-CA-6717-01 2 46987588 46987588 C A SOCS5 3'UTR 0.12 TCGA-CA-6717-01 2 46987971 46987971 T C SOCS5 3'UTR 0.10 TCGA-CA-6717-01 2 46989602 46989602 T C SOCS5 3'UTR 0.22 TCGA-CA-6717-01 2 47177664 47177664 C T TTC7A Missense_Mutation p.S116L 0.14 tolerated(0.2) benign(0.001) TCGA-CA-6717-01 2 47256503 47256503 C T TTC7A Silent p.T594T 0.11 TCGA-CA-6717-01 2 47637440 47637440 A G MSH2 Missense_Mutation p.I192V 0.25 tolerated(1) benign(0.005) TCGA-CA-6717-01 2 48027317 48027317 G A MSH6 Missense_Mutation p.R732Q 0.23 tolerated(0.07) probably_damaging(0.99) TCGA-CA-6717-01 2 48573669 48573669 A C FOXN2 Missense_Mutation p.K106Q 0.08 tolerated(0.08) benign(0.004) TCGA-CA-6717-01 2 48602158 48602158 C A FOXN2 Missense_Mutation p.S291Y 0.11 deleterious(0) benign(0.309) TCGA-CA-6717-01 2 48681801 48681801 G A PPP1R21 Missense_Mutation p.R65Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 48701839 48701839 A G PPP1R21 Missense_Mutation p.E369G 0.13 tolerated(0.18) probably_damaging(0.91) TCGA-CA-6717-01 2 48713882 48713882 A G PPP1R21 Silent p.T477T 0.20 TCGA-CA-6717-01 2 48725703 48725703 A C PPP1R21 Missense_Mutation p.L588F 0.07 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 2 48874070 48874070 G A STON1-GTF2A1L Silent p.Q993Q 0.15 TCGA-CA-6717-01 2 48898739 48898739 A C STON1-GTF2A1L Missense_Mutation p.N1121H 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 48921381 48921381 T G LHCGR Missense_Mutation p.K310T 0.10 tolerated(0.33) benign(0.306) TCGA-CA-6717-01 2 49189991 49189991 C A FSHR Nonsense_Mutation p.E657* 0.18 TCGA-CA-6717-01 2 49190891 49190891 C T FSHR Missense_Mutation p.E357K 0.15 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 49216117 49216117 G T FSHR Missense_Mutation p.L175I 0.09 tolerated(0.12) benign(0.02) TCGA-CA-6717-01 2 50282131 50282131 C T NRXN1 Missense_Mutation p.R1297Q 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-CA-6717-01 2 50282142 50282142 T G NRXN1 Silent p.R1293R 0.18 TCGA-CA-6717-01 2 50464101 50464101 C T NRXN1 Silent p.T1164T 0.20 TCGA-CA-6717-01 2 50464104 50464104 C A NRXN1 Silent p.G1163G 0.20 TCGA-CA-6717-01 2 54080711 54080711 C T GPR75 Missense_Mutation p.G395S 0.23 tolerated_low_confidence(0.19) benign(0.002) TCGA-CA-6717-01 2 54115004 54115004 C A PSME4 Missense_Mutation p.R1504I 0.11 deleterious(0) possibly_damaging(0.886) TCGA-CA-6717-01 2 54120830 54120830 C T PSME4 Missense_Mutation p.R1340Q 0.22 tolerated(0.27) benign(0.417) TCGA-CA-6717-01 2 54176412 54176412 C T PSME4 Missense_Mutation p.R84Q 0.14 deleterious(0.05) benign(0.145) TCGA-CA-6717-01 2 54843372 54843372 A G SPTBN1 Missense_Mutation p.D168G 0.10 deleterious(0.03) possibly_damaging(0.488) TCGA-CA-6717-01 2 55077161 55077161 C A EML6 Missense_Mutation p.S417Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 2 55096409 55096409 C T EML6 Missense_Mutation p.R715W 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-CA-6717-01 2 55130323 55130323 G T EML6 Missense_Mutation p.K1089N 0.13 deleterious(0.03) benign(0.043) TCGA-CA-6717-01 2 55176085 55176085 G T EML6 Missense_Mutation p.K1357N 0.18 tolerated(0.09) benign(0.038) TCGA-CA-6717-01 2 55253979 55253979 T G RTN4 Missense_Mutation p.K419T 0.25 tolerated(0.22) benign(0.079) TCGA-CA-6717-01 2 55254097 55254097 T C RTN4 Missense_Mutation p.M380V 0.20 tolerated(0.41) benign(0.002) TCGA-CA-6717-01 2 55463835 55463835 A C MTIF2 Missense_Mutation p.C711W 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 55561717 55561717 G A CCDC88A Missense_Mutation p.S747F 0.20 tolerated(0.1) probably_damaging(0.998) TCGA-CA-6717-01 2 55562183 55562183 G T CCDC88A Missense_Mutation p.L592I 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 2 55582850 55582850 T C CCDC88A Missense_Mutation p.H222R 0.11 tolerated(0.1) benign(0.003) TCGA-CA-6717-01 2 55591124 55591124 A C CCDC88A Missense_Mutation p.F150V 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 2 55646234 55646234 G T CCDC88A 5'UTR 0.26 TCGA-CA-6717-01 2 55764664 55764664 G A CCDC104 Missense_Mutation p.A195T 0.14 tolerated(0.24) benign(0.003) TCGA-CA-6717-01 2 5834769 5834769 A G SOX11 3'UTR 0.13 TCGA-CA-6717-01 2 5835318 5835318 C A SOX11 3'UTR 0.26 TCGA-CA-6717-01 2 5835428 5835428 C A SOX11 3'UTR 0.14 TCGA-CA-6717-01 2 5835649 5835649 A C SOX11 3'UTR 0.09 TCGA-CA-6717-01 2 5838495 5838495 G A SOX11 3'UTR 0.22 TCGA-CA-6717-01 2 58392929 58392929 G A FANCL Silent p.I212I 0.10 TCGA-CA-6717-01 2 5839990 5839990 G A SOX11 3'UTR 0.17 TCGA-CA-6717-01 2 58456962 58456962 C T FANCL Missense_Mutation p.R68Q 0.10 tolerated(1) benign(0) TCGA-CA-6717-01 2 61009084 61009084 C A PAPOLG Missense_Mutation p.S324Y 0.08 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 2 61009907 61009907 T C PAPOLG Splice_Site p.X371_splice 0.07 TCGA-CA-6717-01 2 61187640 61187640 T G PUS10 Missense_Mutation p.K296T 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 61235964 61235964 T G PUS10 Missense_Mutation p.N105H 0.27 tolerated(0.17) benign(0.004) TCGA-CA-6717-01 2 61258667 61258667 A C PEX13 Missense_Mutation p.N69T 0.10 tolerated(0.24) benign(0.293) TCGA-CA-6717-01 2 61493271 61493271 A C USP34 Missense_Mutation p.F1822C 0.09 deleterious(0) possibly_damaging(0.866) TCGA-CA-6717-01 2 61558470 61558470 G T USP34 Missense_Mutation p.F957L 0.15 deleterious(0.01) possibly_damaging(0.833) TCGA-CA-6717-01 2 61720165 61720165 T C XPO1 Silent p.R423R 0.11 TCGA-CA-6717-01 2 62053619 62053619 C A FAM161A Nonsense_Mutation p.E708* 0.19 TCGA-CA-6717-01 2 62067431 62067431 A G FAM161A Silent p.I236I 0.09 TCGA-CA-6717-01 2 62115529 62115529 A T CCT4 Silent p.I38I 0.11 TCGA-CA-6717-01 2 62450126 62450126 T G B3GNT2 Missense_Mutation p.N257K 0.15 tolerated(0.22) benign(0.042) TCGA-CA-6717-01 2 63217916 63217916 A C EHBP1 Missense_Mutation p.N963H 0.08 deleterious(0) probably_damaging(0.928) TCGA-CA-6717-01 2 63631651 63631651 G A WDPCP Missense_Mutation p.R323W 0.28 deleterious(0.01) benign(0.064) TCGA-CA-6717-01 2 63834096 63834096 C A MDH1 Missense_Mutation p.A345D 0.12 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 2 64111104 64111104 A C UGP2 Missense_Mutation p.K151T 0.11 tolerated(0.26) benign(0.062) TCGA-CA-6717-01 2 64113605 64113605 C A UGP2 Missense_Mutation p.S335Y 0.16 deleterious(0.03) benign(0.061) TCGA-CA-6717-01 2 64174568 64174569 - A VPS54 Frame_Shift_Ins p.L398Ffs*6 0.12 TCGA-CA-6717-01 2 64778997 64778997 G T AFTPH Missense_Mutation p.R130I 0.20 tolerated(0.08) benign(0.001) TCGA-CA-6717-01 2 65245794 65245794 C T SLC1A4 Silent p.L449L 0.09 TCGA-CA-6717-01 2 65299720 65299720 C T CEP68 Missense_Mutation p.S497L 0.28 tolerated(0.09) benign(0.166) TCGA-CA-6717-01 2 66670158 66670158 G T MEIS1 Missense_Mutation p.R203I 0.27 tolerated(0.2) benign(0.01) TCGA-CA-6717-01 2 66739331 66739331 G T MEIS1 Missense_Mutation p.D265Y 0.20 deleterious(0) probably_damaging(0.971) TCGA-CA-6717-01 2 669804 669804 A C TMEM18 Missense_Mutation p.S94A 0.20 deleterious(0.01) probably_damaging(0.946) TCGA-CA-6717-01 2 67637165 67637165 C A ETAA1 Missense_Mutation p.L926I 0.11 deleterious_low_confidence(0.03) benign(0.375) TCGA-CA-6717-01 2 68511442 68511442 G T CNRIP1 3'UTR 0.46 TCGA-CA-6717-01 2 68608011 68608011 C T PLEK Nonsense_Mutation p.R119* 0.19 TCGA-CA-6717-01 2 68609717 68609717 G T PLEK Nonsense_Mutation p.E142* 0.15 TCGA-CA-6717-01 2 68805023 68805023 C A APLF Missense_Mutation p.L469I 0.24 tolerated(0.86) benign(0.006) TCGA-CA-6717-01 2 69049590 69049590 G T ARHGAP25 Missense_Mutation p.R440M 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 69093475 69093475 G T BMP10 Missense_Mutation p.S188Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 2 69098362 69098362 G T BMP10 Missense_Mutation p.F43L 0.28 tolerated(0.63) benign(0.01) TCGA-CA-6717-01 2 69302723 69302723 C T ANTXR1 Missense_Mutation p.A165V 0.07 deleterious(0) possibly_damaging(0.609) TCGA-CA-6717-01 2 69329977 69329977 C A ANTXR1 Nonsense_Mutation p.S236* 0.26 TCGA-CA-6717-01 2 69399516 69399516 A G ANTXR1 Intron 0.18 TCGA-CA-6717-01 2 69472360 69472360 C T ANTXR1 Missense_Mutation p.R480C 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-CA-6717-01 2 69623361 69623361 A C NFU1 3'UTR 0.10 TCGA-CA-6717-01 2 69754433 69754433 T C AAK1 Missense_Mutation p.D297G 0.11 deleterious(0) unknown(0) TCGA-CA-6717-01 2 69757250 69757250 T G AAK1 Missense_Mutation p.K254T 0.11 deleterious(0) unknown(0) TCGA-CA-6717-01 2 69757260 69757260 A C AAK1 Missense_Mutation p.L251V 0.19 deleterious(0) unknown(0) TCGA-CA-6717-01 2 70064794 70064794 T G GMCL1 Missense_Mutation p.L126V 0.08 deleterious(0) probably_damaging(0.972) TCGA-CA-6717-01 2 70162550 70162550 C T MXD1 Nonsense_Mutation p.R91* 0.13 TCGA-CA-6717-01 2 7018173 7018173 G A RSAD2 Missense_Mutation p.R81H 0.21 deleterious(0) probably_damaging(0.977) TCGA-CA-6717-01 2 70502186 70502186 G A PCYOX1 Missense_Mutation p.R197Q 0.12 tolerated(0.7) benign(0.007) TCGA-CA-6717-01 2 70504237 70504237 G T PCYOX1 Nonsense_Mutation p.E411* 0.18 TCGA-CA-6717-01 2 71046499 71046499 A C CLEC4F Missense_Mutation p.F86V 0.19 tolerated(0.82) benign(0) TCGA-CA-6717-01 2 71058222 71058222 G T CD207 Missense_Mutation p.L316I 0.21 tolerated(0.39) benign(0.197) TCGA-CA-6717-01 2 71160006 71160006 T C VAX2 Missense_Mutation p.I182T 0.09 deleterious(0.01) benign(0.24) TCGA-CA-6717-01 2 71160059 71160059 C T VAX2 Missense_Mutation p.L200F 0.26 deleterious(0) probably_damaging(0.913) TCGA-CA-6717-01 2 71215702 71215702 T C TEX261 3'UTR 0.24 TCGA-CA-6717-01 2 71305500 71305500 C A NAGK Missense_Mutation p.F345L 0.21 tolerated(0.46) benign(0.001) TCGA-CA-6717-01 2 71576442 71576442 T G ZNF638 Missense_Mutation p.S120A 0.13 tolerated(0.69) benign(0.257) TCGA-CA-6717-01 2 71576573 71576573 A G ZNF638 Silent p.E163E 0.11 TCGA-CA-6717-01 2 71662056 71662056 T C ZNF638 3'UTR 0.21 TCGA-CA-6717-01 2 71801333 71801333 G A DYSF Silent p.R1078R 0.18 TCGA-CA-6717-01 2 71816797 71816797 G T DYSF Silent p.T1159T 0.24 TCGA-CA-6717-01 2 71839770 71839770 G T DYSF Splice_Site p.X1408_splice 0.27 TCGA-CA-6717-01 2 71886063 71886063 G T DYSF Missense_Mutation p.R1604I 0.23 deleterious(0) possibly_damaging(0.817) TCGA-CA-6717-01 2 72371296 72371296 A G CYP26B1 Missense_Mutation p.F84S 0.08 deleterious(0) probably_damaging(0.956) TCGA-CA-6717-01 2 72692373 72692373 T G EXOC6B Silent p.G632G 0.13 TCGA-CA-6717-01 2 72968432 72968432 C T EXOC6B Splice_Site p.X93_splice 0.18 TCGA-CA-6717-01 2 73446039 73446039 C T SMYD5 Silent p.F49F 0.11 TCGA-CA-6717-01 2 73650049 73650049 A G ALMS1 Silent p.E237E 0.07 TCGA-CA-6717-01 2 73680548 73680548 G T ALMS1 Missense_Mutation p.K2297N 0.31 possibly_damaging(0.73) TCGA-CA-6717-01 2 73682300 73682300 A C ALMS1 Missense_Mutation p.K2517Q 0.17 probably_damaging(0.992) TCGA-CA-6717-01 2 73799520 73799520 T G ALMS1 Missense_Mutation p.F3505V 0.17 probably_damaging(0.929) TCGA-CA-6717-01 2 73957122 73957122 C A TPRKB Missense_Mutation p.G159V 0.10 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 2 73993587 73993587 C T DUSP11 Missense_Mutation p.R298Q 0.08 tolerated_low_confidence(0.25) benign(0.016) TCGA-CA-6717-01 2 74007097 74007097 C T DUSP11 Missense_Mutation p.S49N 0.19 tolerated_low_confidence(0.29) benign(0.024) TCGA-CA-6717-01 2 74184300 74184300 A C DGUOK Missense_Mutation p.I214L 0.26 tolerated(0.09) benign(0.081) TCGA-CA-6717-01 2 74386317 74386317 A C MOB1A Silent p.V158V 0.19 TCGA-CA-6717-01 2 74459611 74459611 T C SLC4A5 Missense_Mutation p.Q920R 0.12 tolerated(0.1) probably_damaging(0.959) TCGA-CA-6717-01 2 74474433 74474433 C A SLC4A5 Missense_Mutation p.G597C 0.17 deleterious(0.01) probably_damaging(0.918) TCGA-CA-6717-01 2 74483047 74483047 A G SLC4A5 Missense_Mutation p.F294L 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 2 74486737 74486737 G T SLC4A5 Missense_Mutation p.S282Y 0.15 deleterious(0) possibly_damaging(0.595) TCGA-CA-6717-01 2 74593447 74593447 A G DCTN1 Missense_Mutation p.I895T 0.21 tolerated(0.42) benign(0.044) TCGA-CA-6717-01 2 74594513 74594513 T G DCTN1 Missense_Mutation p.E740A 0.26 tolerated(0.44) possibly_damaging(0.902) TCGA-CA-6717-01 2 74689684 74689684 A G MOGS Missense_Mutation p.V411A 0.27 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 2 74689935 74689935 T G MOGS Missense_Mutation p.K327N 0.27 tolerated(0.07) possibly_damaging(0.477) TCGA-CA-6717-01 2 74699544 74699544 C A MRPL53 Missense_Mutation p.C49F 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 74710609 74710609 A C TTC31 Intron 0.31 TCGA-CA-6717-01 2 74726519 74726519 T G LBX2 Intron 0.09 TCGA-CA-6717-01 2 74745560 74745560 A C DQX1 3'UTR 0.28 TCGA-CA-6717-01 2 74763430 74763430 G A LOXL3 Missense_Mutation p.R361C 0.17 deleterious(0.01) probably_damaging(0.97) TCGA-CA-6717-01 2 74808855 74808855 G T M1AP Missense_Mutation p.L239I 0.16 deleterious(0.02) possibly_damaging(0.449) TCGA-CA-6717-01 2 75425860 75425860 C T TACR1 Silent p.T67T 0.18 TCGA-CA-6717-01 2 75425988 75425988 A G TACR1 Missense_Mutation p.F25L 0.13 deleterious(0.01) possibly_damaging(0.755) TCGA-CA-6717-01 2 77746526 77746526 G A LRRTM4 Missense_Mutation p.R157W 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 77746816 77746816 G T LRRTM4 Missense_Mutation p.S60Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 79312402 79312402 C A REG1B Missense_Mutation p.K147N 0.23 tolerated(0.14) possibly_damaging(0.728) TCGA-CA-6717-01 2 80101298 80101298 C A CTNNA2 Missense_Mutation p.L228I 0.11 tolerated(0.33) benign(0.016) TCGA-CA-6717-01 2 80530952 80530952 A G LRRTM1 5'UTR 0.13 TCGA-CA-6717-01 2 80808886 80808886 G A CTNNA2 Missense_Mutation p.R650H 0.19 tolerated(0.16) benign(0.021) TCGA-CA-6717-01 2 80874726 80874726 C T CTNNA2 Missense_Mutation p.S816L 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 84650808 84650808 A G SUCLG1 3'UTR 0.08 TCGA-CA-6717-01 2 84752747 84752747 G A DNAH6 Missense_Mutation p.R95Q 0.14 tolerated_low_confidence(0.09) benign(0.012) TCGA-CA-6717-01 2 84811288 84811288 T C DNAH6 Missense_Mutation p.S799P 0.10 tolerated(0.22) benign(0.066) TCGA-CA-6717-01 2 84880616 84880616 T C DNAH6 Missense_Mutation p.L1751S 0.12 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 2 84897488 84897488 G T DNAH6 Nonsense_Mutation p.E2115* 0.11 TCGA-CA-6717-01 2 84904145 84904145 C T DNAH6 Missense_Mutation p.S2210L 0.19 deleterious(0.01) benign(0.108) TCGA-CA-6717-01 2 84928279 84928279 G A DNAH6 Missense_Mutation p.G2626E 0.11 tolerated(0.25) benign(0.072) TCGA-CA-6717-01 2 84932839 84932839 G A DNAH6 Missense_Mutation p.E2899K 0.19 deleterious(0.02) possibly_damaging(0.473) TCGA-CA-6717-01 2 85066313 85066313 C A TRABD2A Missense_Mutation p.E268D 0.09 deleterious(0.01) possibly_damaging(0.791) TCGA-CA-6717-01 2 85097726 85097726 C T TRABD2A Missense_Mutation p.A98T 0.10 tolerated(0.06) probably_damaging(0.969) TCGA-CA-6717-01 2 85255037 85255037 A C KCMF1 Missense_Mutation p.K14N 0.11 deleterious(0) probably_damaging(0.954) TCGA-CA-6717-01 2 85533598 85533598 A G TCF7L1 Silent p.E391E 0.13 TCGA-CA-6717-01 2 85598651 85598651 T C ELMOD3 Silent p.L191L 0.21 TCGA-CA-6717-01 2 85777223 85777223 C T GGCX Missense_Mutation p.R704Q 0.28 tolerated(0.13) possibly_damaging(0.691) TCGA-CA-6717-01 2 86071610 86071610 A G ST3GAL5 Missense_Mutation p.F306S 0.10 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 2 86094734 86094734 A G ST3GAL5 Intron 0.11 TCGA-CA-6717-01 2 86354360 86354360 G A PTCD3 Missense_Mutation p.R343Q 0.14 deleterious(0.01) possibly_damaging(0.904) TCGA-CA-6717-01 2 86364263 86364263 A C PTCD3 Missense_Mutation p.K660T 0.08 deleterious(0) possibly_damaging(0.756) TCGA-CA-6717-01 2 86406557 86406557 G A IMMT Missense_Mutation p.S103L 0.10 deleterious(0.01) benign(0.003) TCGA-CA-6717-01 2 86444183 86444183 G T REEP1 3'UTR 0.08 TCGA-CA-6717-01 2 86683680 86683680 C T KDM3A Silent p.N224N 0.25 TCGA-CA-6717-01 2 86709743 86709743 C T KDM3A Missense_Mutation p.R950C 0.24 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 2 86718177 86718177 T C KDM3A Silent p.H1249H 0.10 TCGA-CA-6717-01 2 86769404 86769404 T C RNF103-CHMP3 Missense_Mutation p.E55G 0.09 deleterious(0) probably_damaging(0.949) TCGA-CA-6717-01 2 86832111 86832111 C T RNF103 Missense_Mutation p.E305K 0.16 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 2 86847539 86847539 C T RNF103-CHMP3 Missense_Mutation p.E16K 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-CA-6717-01 2 86968155 86968155 A G RMND5A Missense_Mutation p.H83R 0.11 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 2 86993011 86993011 T C RMND5A Missense_Mutation p.Y240H 0.19 deleterious(0) possibly_damaging(0.89) TCGA-CA-6717-01 2 86997250 86997250 T C RMND5A Splice_Site p.X319_splice 0.18 TCGA-CA-6717-01 2 88082418 88082418 C A RGPD2 Missense_Mutation p.K1375N 0.19 deleterious(0) possibly_damaging(0.8) TCGA-CA-6717-01 2 88082480 88082480 C A RGPD2 Nonsense_Mutation p.E1355* 0.06 TCGA-CA-6717-01 2 88367482 88367482 C T SMYD1 Silent p.I33I 0.12 TCGA-CA-6717-01 2 88422576 88422576 A C FABP1 Missense_Mutation p.I127M 0.08 tolerated(0.08) benign(0.143) TCGA-CA-6717-01 2 88478488 88478488 T C THNSL2 Missense_Mutation p.L253P 0.14 tolerated(0.37) benign(0.002) TCGA-CA-6717-01 2 88482594 88482594 T C THNSL2 Splice_Site p.X359_splice 0.12 TCGA-CA-6717-01 2 88857385 88857385 T G EIF2AK3 Missense_Mutation p.N1074H 0.13 deleterious(0.02) benign(0.015) TCGA-CA-6717-01 2 89084244 89084244 A C ANKRD36BP2 RNA 0.62 TCGA-CA-6717-01 2 89088002 89088002 A C ANKRD36BP2 RNA 0.08 TCGA-CA-6717-01 2 8916886 8916886 G T KIDINS220 Missense_Mutation p.S947Y 0.14 tolerated(0.29) probably_damaging(1) TCGA-CA-6717-01 2 89246849 89246849 A C IGKV1-5 Silent p.T107T 0.12 TCGA-CA-6717-01 2 89247112 89247112 C T IGKV1-5 Missense_Mutation p.A20T 0.19 tolerated(0.19) benign(0.008) TCGA-CA-6717-01 2 89384702 89384702 A C IGKV3-15 Missense_Mutation p.Y106D 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 89416851 89416851 T C IGKV1-17 Silent p.L111L 0.08 TCGA-CA-6717-01 2 89459280 89459280 A C IGKV6-21 Silent p.A99A 0.17 TCGA-CA-6717-01 2 90044336 90044336 G T IGKV2D-24 Missense_Mutation p.R86I 0.16 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 2 90108892 90108892 T G IGKV6D-41 Missense_Mutation p.L53V 0.10 tolerated(0.08) possibly_damaging(0.667) TCGA-CA-6717-01 2 90211989 90211989 T C IGKV3D-11 Silent p.S27S 0.08 TCGA-CA-6717-01 2 90212051 90212051 G T IGKV3D-11 Missense_Mutation p.G48V 0.09 deleterious(0) benign(0.003) TCGA-CA-6717-01 2 90249353 90249353 A G IGKV1D-43 Silent p.E103E 0.12 TCGA-CA-6717-01 2 90260099 90260099 C A IGKV1D-8 Missense_Mutation p.L68I 0.12 deleterious(0.01) benign(0.222) TCGA-CA-6717-01 2 91805519 91805519 G A AC116050.1 Intron 0.27 TCGA-CA-6717-01 2 9514892 9514892 G T ASAP2 Missense_Mutation p.R522I 0.14 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 2 95481201 95481201 C A ANKRD20A8P RNA 0.24 TCGA-CA-6717-01 2 9595881 9595881 T G CPSF3 Missense_Mutation p.L533W 0.11 deleterious(0) probably_damaging(0.95) TCGA-CA-6717-01 2 9624638 9624638 A G IAH1 Missense_Mutation p.T175A 0.07 tolerated(0.2) benign(0.012) TCGA-CA-6717-01 2 96259796 96259796 T A TRIM43 Missense_Mutation p.F9I 0.16 deleterious(0.01) benign(0.429) TCGA-CA-6717-01 2 96259835 96259835 C T TRIM43 Silent p.L22L 0.16 TCGA-CA-6717-01 2 96563059 96563059 T G ANKRD36C Missense_Mutation p.N258T 0.19 tolerated(0.1) possibly_damaging(0.592) TCGA-CA-6717-01 2 9661333 9661333 T C ADAM17 Missense_Mutation p.E319G 0.12 deleterious(0.02) possibly_damaging(0.879) TCGA-CA-6717-01 2 96652628 96652628 T G ANKRD36C Missense_Mutation p.Q119H 0.12 deleterious(0.03) possibly_damaging(0.533) TCGA-CA-6717-01 2 96798426 96798426 G A ASTL Nonsense_Mutation p.Q164* 0.10 TCGA-CA-6717-01 2 96970479 96970479 C T SNRNP200 Missense_Mutation p.R58Q 0.20 tolerated(0.06) possibly_damaging(0.716) TCGA-CA-6717-01 2 97359421 97359421 C A FER1L5 RNA 0.12 TCGA-CA-6717-01 2 97366203 97366203 G A FER1L5 RNA 0.18 TCGA-CA-6717-01 2 97367732 97367732 T G LMAN2L 3'Flank 0.13 TCGA-CA-6717-01 2 97370495 97370495 C A LMAN2L 3'Flank 0.22 TCGA-CA-6717-01 2 97427439 97427439 A G CNNM4 Missense_Mutation p.I235V 0.21 tolerated(1) benign(0.14) TCGA-CA-6717-01 2 97498399 97498399 G A CNNM3 3'UTR 0.13 TCGA-CA-6717-01 2 97784142 97784142 A C ANKRD36 Missense_Mutation p.N125T 0.10 deleterious(0) probably_damaging(0.932) TCGA-CA-6717-01 2 97851223 97851223 A C ANKRD36 Missense_Mutation p.K673Q 0.11 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-CA-6717-01 2 98451310 98451310 T G TMEM131 Missense_Mutation p.I295L 0.10 deleterious(0) probably_damaging(0.965) TCGA-CA-6717-01 2 98736217 98736217 A C VWA3B Missense_Mutation p.N178T 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 2 98833402 98833402 G T VWA3B Intron 0.32 TCGA-CA-6717-01 2 98887244 98887244 G A VWA3B Silent p.S981S 0.24 TCGA-CA-6717-01 2 99013654 99013654 A G CNGA3 Missense_Mutation p.D674G 0.10 tolerated(0.56) benign(0.001) TCGA-CA-6717-01 2 99203994 99203994 T G INPP4A Missense_Mutation p.F953V 0.14 deleterious(0) possibly_damaging(0.686) TCGA-CA-6717-01 2 99241980 99241980 T G MGAT4A 3'UTR 0.16 TCGA-CA-6717-01 2 99271967 99271967 T G MGAT4A Missense_Mutation p.N239H 0.19 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 2 99413917 99413917 G A KIAA1211L Missense_Mutation p.R834W 0.22 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 2 99651691 99651691 A C TSGA10 Splice_Site p.X538_splice 0.15 TCGA-CA-6717-01 2 99779266 99779266 T G LIPT1 Missense_Mutation p.N282K 0.08 tolerated(0.45) benign(0.001) TCGA-CA-6717-01 2 99976718 99976718 C T EIF5B Missense_Mutation p.L19F 0.21 unknown(0) TCGA-CA-6717-01 2 99980233 99980233 G A EIF5B Missense_Mutation p.A349T 0.20 possibly_damaging(0.483) TCGA-CA-6717-01 2 99999245 99999245 A G EIF5B Missense_Mutation p.N711S 0.11 probably_damaging(0.999) TCGA-CA-6717-01 3 100058042 100058042 C A NIT2 Missense_Mutation p.S40Y 0.27 deleterious(0) possibly_damaging(0.515) TCGA-CA-6717-01 3 100170781 100170781 T C LNP1 Silent p.R125R 0.26 TCGA-CA-6717-01 3 100362387 100362387 G T GPR128 Missense_Mutation p.V286F 0.12 tolerated(0.57) benign(0.157) TCGA-CA-6717-01 3 100378603 100378603 T C GPR128 Missense_Mutation p.V632A 0.11 deleterious(0.03) possibly_damaging(0.755) TCGA-CA-6717-01 3 100432667 100432667 A C TFG Silent p.G46G 0.25 TCGA-CA-6717-01 3 100438866 100438866 A C TFG Missense_Mutation p.I78L 0.07 tolerated(0.1) benign(0.09) TCGA-CA-6717-01 3 100494175 100494175 G T ABI3BP Silent p.I735I 0.15 TCGA-CA-6717-01 3 100605144 100605144 T G ABI3BP Missense_Mutation p.E169A 0.24 deleterious(0) benign(0.292) TCGA-CA-6717-01 3 100617735 100617735 T G ABI3BP Missense_Mutation p.K118T 0.23 deleterious(0) benign(0.403) TCGA-CA-6717-01 3 100962378 100962378 C A IMPG2 Nonsense_Mutation p.E933* 0.21 TCGA-CA-6717-01 3 100988383 100988383 T G IMPG2 Missense_Mutation p.K288T 0.11 deleterious(0) probably_damaging(0.932) TCGA-CA-6717-01 3 101044860 101044860 T G SENP7 Missense_Mutation p.K1027T 0.23 deleterious(0) probably_damaging(0.967) TCGA-CA-6717-01 3 101051742 101051742 T A SENP7 Intron 0.10 TCGA-CA-6717-01 3 101056354 101056354 A C SENP7 Missense_Mutation p.S827A 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 3 101086677 101086677 C T SENP7 Silent p.Q325Q 0.10 TCGA-CA-6717-01 3 101086699 101086699 G T SENP7 Missense_Mutation p.S318Y 0.10 tolerated(0.12) benign(0.021) TCGA-CA-6717-01 3 101311560 101311560 A C PCNP Missense_Mutation p.K167T 0.16 deleterious(0) benign(0.195) TCGA-CA-6717-01 3 101384352 101384352 T C ZBTB11 Missense_Mutation p.D360G 0.11 tolerated_low_confidence(0.32) benign(0) TCGA-CA-6717-01 3 101525909 101525909 C A NXPE3 Silent p.I287I 0.16 TCGA-CA-6717-01 3 10255199 10255199 G T IRAK2 Missense_Mutation p.R252I 0.32 deleterious(0.02) probably_damaging(0.932) TCGA-CA-6717-01 3 105239011 105239011 T G ALCAM Nonsense_Mutation p.Y58* 0.10 TCGA-CA-6717-01 3 105260569 105260570 - A ALCAM Frame_Shift_Ins p.S320Kfs*25 0.17 TCGA-CA-6717-01 3 105266008 105266008 C T ALCAM Nonsense_Mutation p.R374* 0.07 TCGA-CA-6717-01 3 105572429 105572429 T G CBLB Missense_Mutation p.Q83P 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 107097088 107097088 A C CCDC54 Missense_Mutation p.K218N 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 107447639 107447639 C T BBX Missense_Mutation p.P145S 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 107447705 107447705 C T BBX Nonsense_Mutation p.R167* 0.26 TCGA-CA-6717-01 3 107474459 107474459 T G BBX Silent p.T280T 0.14 TCGA-CA-6717-01 3 107799167 107799167 T G CD47 Missense_Mutation p.K24T 0.09 tolerated(0.59) possibly_damaging(0.523) TCGA-CA-6717-01 3 108074185 108074185 T C HHLA2 Silent p.N214N 0.13 TCGA-CA-6717-01 3 108189543 108189543 A C MYH15 Splice_Site p.X481_splice 0.19 TCGA-CA-6717-01 3 108300979 108300979 A C KIAA1524 Nonsense_Mutation p.L143* 0.21 TCGA-CA-6717-01 3 108330025 108330025 A C DZIP3 Missense_Mutation p.K36T 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CA-6717-01 3 108363417 108363417 T A DZIP3 Silent p.I516I 0.27 TCGA-CA-6717-01 3 108373068 108373068 G T DZIP3 Missense_Mutation p.D704Y 0.11 deleterious_low_confidence(0.01) benign(0.219) TCGA-CA-6717-01 3 108565918 108565918 T C TRAT1 Silent p.V52V 0.10 TCGA-CA-6717-01 3 108568059 108568059 G T TRAT1 Missense_Mutation p.E87D 0.19 tolerated(0.08) benign(0.117) TCGA-CA-6717-01 3 108572686 108572686 T C TRAT1 Missense_Mutation p.F175L 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 3 108639317 108639317 G T GUCA1C Missense_Mutation p.S107Y 0.09 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 3 108677833 108677834 - T MORC1 Frame_Shift_Ins p.N978Kfs*2 0.11 TCGA-CA-6717-01 3 108754263 108754263 G A MORC1 Silent p.I461I 0.13 TCGA-CA-6717-01 3 108788595 108788595 C T MORC1 Silent p.A233A 0.15 TCGA-CA-6717-01 3 108813836 108813836 A G MORC1 Missense_Mutation p.L168S 0.12 deleterious(0) probably_damaging(0.953) TCGA-CA-6717-01 3 10885971 10885971 C T SLC6A11 Silent p.L232L 0.10 TCGA-CA-6717-01 3 109031534 109031534 G T DPPA2 Missense_Mutation p.F13L 0.22 tolerated(0.19) benign(0.011) TCGA-CA-6717-01 3 11075338 11075338 C T SLC6A1 Silent p.F480F 0.17 TCGA-CA-6717-01 3 111264027 111264027 G T CD96 Missense_Mutation p.D66Y 0.23 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 3 111317054 111317054 G T CD96 Nonsense_Mutation p.E315* 0.17 TCGA-CA-6717-01 3 111319750 111319750 C A CD96 Missense_Mutation p.T375N 0.13 deleterious(0.02) possibly_damaging(0.541) TCGA-CA-6717-01 3 111564846 111564846 T G PLCXD2 3'UTR 0.15 TCGA-CA-6717-01 3 111603001 111603001 C A PHLDB2 Missense_Mutation p.S26Y 0.25 deleterious_low_confidence(0) benign(0.299) TCGA-CA-6717-01 3 111671428 111671428 A G PHLDB2 Missense_Mutation p.S881G 0.14 tolerated(0.14) benign(0.103) TCGA-CA-6717-01 3 111718352 111718352 A G TAGLN3 Missense_Mutation p.N28S 0.16 tolerated(0.32) benign(0.009) TCGA-CA-6717-01 3 111785324 111785324 C T TMPRSS7 Silent p.G421G 0.15 TCGA-CA-6717-01 3 111923202 111923202 C T SLC9C1 Missense_Mutation p.E679K 0.26 deleterious(0.02) possibly_damaging(0.581) TCGA-CA-6717-01 3 111981907 111981907 C T SLC9C1 Missense_Mutation p.R354Q 0.12 deleterious(0.03) possibly_damaging(0.672) TCGA-CA-6717-01 3 112184914 112184914 T C BTLA 3'UTR 0.24 TCGA-CA-6717-01 3 112198305 112198305 T C BTLA Missense_Mutation p.T134A 0.13 tolerated(0.08) benign(0.122) TCGA-CA-6717-01 3 112198536 112198536 C A BTLA Nonsense_Mutation p.E57* 0.17 TCGA-CA-6717-01 3 112326074 112326074 A C CCDC80 Missense_Mutation p.L819V 0.18 tolerated(0.54) probably_damaging(0.998) TCGA-CA-6717-01 3 112534594 112534594 G T CD200R1L 3'UTR 0.26 TCGA-CA-6717-01 3 112538732 112538732 G A CD200R1L Silent p.T230T 0.09 TCGA-CA-6717-01 3 112546303 112546303 G A CD200R1L Missense_Mutation p.P114L 0.15 deleterious(0) probably_damaging(0.935) TCGA-CA-6717-01 3 112548176 112548176 A C CD200R1L Missense_Mutation p.I34M 0.13 tolerated(0.23) benign(0.009) TCGA-CA-6717-01 3 112648283 112648283 A C CD200R1 Missense_Mutation p.L92V 0.12 tolerated(1) benign(0.143) TCGA-CA-6717-01 3 112736335 112736335 T G C3orf17 Missense_Mutation p.N74T 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-CA-6717-01 3 112991528 112991528 C T BOC Silent p.I313I 0.09 TCGA-CA-6717-01 3 112998242 112998242 C A BOC Missense_Mutation p.L654M 0.29 deleterious(0.02) probably_damaging(0.972) TCGA-CA-6717-01 3 11303742 11303742 C A HRH1 3'UTR 0.08 TCGA-CA-6717-01 3 113166927 113166927 T G SPICE1 Missense_Mutation p.K795T 0.24 tolerated(0.06) probably_damaging(0.978) TCGA-CA-6717-01 3 113373812 113373812 A G KIAA2018 Silent p.H2239H 0.16 TCGA-CA-6717-01 3 113374248 113374248 C T KIAA2018 Missense_Mutation p.R2094Q 0.15 probably_damaging(0.997) TCGA-CA-6717-01 3 113374342 113374342 A C KIAA2018 Missense_Mutation p.F2063V 0.15 probably_damaging(0.997) TCGA-CA-6717-01 3 113377798 113377798 C A KIAA2018 Missense_Mutation p.D911Y 0.21 possibly_damaging(0.798) TCGA-CA-6717-01 3 113503628 113503628 G A ATP6V1A Missense_Mutation p.R171Q 0.26 tolerated(0.19) benign(0.027) TCGA-CA-6717-01 3 113528269 113528269 G T ATP6V1A Missense_Mutation p.D617Y 0.08 deleterious(0) probably_damaging(0.949) TCGA-CA-6717-01 3 113672618 113672618 G A ZDHHC23 Missense_Mutation p.R78Q 0.30 deleterious(0.03) probably_damaging(0.96) TCGA-CA-6717-01 3 113673150 113673150 A C ZDHHC23 Missense_Mutation p.K255N 0.20 tolerated(0.31) benign(0.027) TCGA-CA-6717-01 3 113858437 113858437 G T DRD3 Silent p.I211I 0.19 TCGA-CA-6717-01 3 113955150 113955150 A T ZNF80 Missense_Mutation p.S258T 0.10 deleterious(0) possibly_damaging(0.597) TCGA-CA-6717-01 3 114014392 114014392 G A TIGIT Missense_Mutation p.G21E 0.11 tolerated(0.08) benign(0.357) TCGA-CA-6717-01 3 114018496 114018496 G A TIGIT Silent p.A148A 0.11 TCGA-CA-6717-01 3 115395395 115395395 C T GAP43 Missense_Mutation p.A225V 0.33 tolerated(0.14) benign(0.008) TCGA-CA-6717-01 3 115805269 115805269 C T LSAMP Missense_Mutation p.R97Q 0.27 tolerated(1) benign(0.091) TCGA-CA-6717-01 3 11851118 11851118 C A TAMM41 Missense_Mutation p.M249I 0.07 tolerated(0.34) benign(0.093) TCGA-CA-6717-01 3 118824045 118824045 C A IGSF11 5'UTR 0.12 TCGA-CA-6717-01 3 118865915 118865915 A G C3orf30 Silent p.R293R 0.10 TCGA-CA-6717-01 3 118906709 118906709 G A UPK1B Missense_Mutation p.D53N 0.11 tolerated(0.13) benign(0.243) TCGA-CA-6717-01 3 118935014 118935014 G A B4GALT4 Intron 0.21 TCGA-CA-6717-01 3 118945832 118945832 C T B4GALT4 Missense_Mutation p.E104K 0.08 tolerated(0.54) benign(0.026) TCGA-CA-6717-01 3 118949063 118949063 G T B4GALT4 5'UTR 0.31 TCGA-CA-6717-01 3 119134138 119134138 T G ARHGAP31 Missense_Mutation p.F1121C 0.09 deleterious(0.02) possibly_damaging(0.789) TCGA-CA-6717-01 3 119207774 119207774 A C POGLUT1 Splice_Site p.X247_splice 0.09 TCGA-CA-6717-01 3 119217606 119217606 G A TIMMDC1 Missense_Mutation p.R9Q 0.09 tolerated(0.19) benign(0.005) TCGA-CA-6717-01 3 119256239 119256239 C T CD80 Missense_Mutation p.D149N 0.14 deleterious(0.01) possibly_damaging(0.86) TCGA-CA-6717-01 3 119327658 119327658 G T PLA1A Missense_Mutation p.R106I 0.12 tolerated(0.09) possibly_damaging(0.56) TCGA-CA-6717-01 3 119562171 119562171 T C GSK3B Missense_Mutation p.I389V 0.19 tolerated(0.54) benign(0) TCGA-CA-6717-01 3 119886235 119886235 G A GPR156 Missense_Mutation p.R697C 0.29 tolerated(0.19) benign(0.001) TCGA-CA-6717-01 3 120128470 120128470 C T FSTL1 Missense_Mutation p.R124H 0.14 tolerated(0.2) benign(0.125) TCGA-CA-6717-01 3 120469761 120469761 C T GTF2E1 Missense_Mutation p.S121L 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 121097632 121097632 C T STXBP5L Missense_Mutation p.A773V 0.10 tolerated(0.11) benign(0.04) TCGA-CA-6717-01 3 121202375 121202375 T C POLQ Missense_Mutation p.D1943G 0.27 deleterious(0) benign(0.352) TCGA-CA-6717-01 3 121206714 121206714 T G POLQ Missense_Mutation p.K1688N 0.10 tolerated(0.89) benign(0) TCGA-CA-6717-01 3 121207175 121207175 T G POLQ Missense_Mutation p.K1535Q 0.08 tolerated(0.11) benign(0.017) TCGA-CA-6717-01 3 121207695 121207695 C A POLQ Missense_Mutation p.Q1361H 0.24 tolerated(0.05) possibly_damaging(0.553) TCGA-CA-6717-01 3 121208307 121208307 C A POLQ Missense_Mutation p.K1157N 0.11 tolerated_low_confidence(1) benign(0) TCGA-CA-6717-01 3 121238786 121238786 C T POLQ Missense_Mutation p.R467Q 0.20 tolerated(0.34) benign(0.015) TCGA-CA-6717-01 3 121304871 121304871 T C ARGFX Silent p.V124V 0.17 TCGA-CA-6717-01 3 121376175 121376175 G A HCLS1 Nonsense_Mutation p.R37* 0.30 TCGA-CA-6717-01 3 121396199 121396199 T G GOLGB1 Missense_Mutation p.N2991T 0.28 benign(0.209) TCGA-CA-6717-01 3 121413236 121413236 C A GOLGB1 Missense_Mutation p.R2045I 0.20 probably_damaging(0.952) TCGA-CA-6717-01 3 121415350 121415350 T G GOLGB1 Missense_Mutation p.K1340N 0.09 probably_damaging(0.998) TCGA-CA-6717-01 3 121416180 121416180 C A GOLGB1 Nonsense_Mutation p.E1064* 0.19 TCGA-CA-6717-01 3 121416222 121416222 C A GOLGB1 Nonsense_Mutation p.E1050* 0.21 TCGA-CA-6717-01 3 121416291 121416291 C A GOLGB1 Nonsense_Mutation p.E1027* 0.12 TCGA-CA-6717-01 3 121417683 121417683 C A GOLGB1 Nonsense_Mutation p.E563* 0.19 TCGA-CA-6717-01 3 121418695 121418695 C A GOLGB1 Missense_Mutation p.Q519H 0.14 possibly_damaging(0.885) TCGA-CA-6717-01 3 121441207 121441207 C A GOLGB1 Nonsense_Mutation p.E184* 0.09 TCGA-CA-6717-01 3 121489221 121489221 A C IQCB1 Missense_Mutation p.L590V 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 3 121573579 121573579 T G EAF2 Missense_Mutation p.Y83D 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 121634097 121634097 C T SLC15A2 Silent p.F184F 0.16 TCGA-CA-6717-01 3 121650527 121650527 C A SLC15A2 Missense_Mutation p.S569Y 0.24 tolerated(0.33) benign(0.001) TCGA-CA-6717-01 3 121825089 121825089 G T CD86 Nonsense_Mutation p.E149* 0.19 TCGA-CA-6717-01 3 12195086 12195086 C A TIMP4 Missense_Mutation p.D202Y 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 12195840 12195840 T G TIMP4 Missense_Mutation p.N155T 0.10 deleterious(0) possibly_damaging(0.697) TCGA-CA-6717-01 3 121980594 121980594 G A CASR Missense_Mutation p.D238N 0.08 tolerated(0.89) benign(0.01) TCGA-CA-6717-01 3 122002549 122002549 A T CASR Missense_Mutation p.N593I 0.12 tolerated(0.33) benign(0.001) TCGA-CA-6717-01 3 122002828 122002828 C T CASR Missense_Mutation p.T686M 0.11 deleterious(0) benign(0.149) TCGA-CA-6717-01 3 122003271 122003271 G A CASR Missense_Mutation p.A834T 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 122133613 122133613 T G WDR5B Missense_Mutation p.K255Q 0.17 tolerated(0.09) benign(0.022) TCGA-CA-6717-01 3 122133769 122133769 T G WDR5B Missense_Mutation p.K203Q 0.12 deleterious(0.03) benign(0.039) TCGA-CA-6717-01 3 122274443 122274443 T G PARP9 Missense_Mutation p.K227T 0.09 tolerated(0.5) benign(0.009) TCGA-CA-6717-01 3 122289345 122289345 G T DTX3L Missense_Mutation p.R660L 0.27 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 3 122296463 122296463 C T PARP15 5'UTR 0.29 TCGA-CA-6717-01 3 122345718 122345718 G A PARP15 Missense_Mutation p.D426N 0.08 tolerated(0.09) benign(0.005) TCGA-CA-6717-01 3 122399793 122399793 G T PARP14 Missense_Mutation p.K21N 0.23 deleterious(0.01) possibly_damaging(0.839) TCGA-CA-6717-01 3 122418261 122418261 A G PARP14 Missense_Mutation p.K287R 0.20 deleterious(0.05) benign(0.338) TCGA-CA-6717-01 3 122422620 122422620 A C PARP14 Missense_Mutation p.D1038A 0.24 deleterious(0) possibly_damaging(0.593) TCGA-CA-6717-01 3 122564717 122564717 A G DIRC2 Missense_Mutation p.Q314R 0.12 deleterious(0.01) possibly_damaging(0.771) TCGA-CA-6717-01 3 122631065 122631065 G A SEMA5B Silent p.L1004L 0.23 TCGA-CA-6717-01 3 122944072 122944072 G A SEC22A Missense_Mutation p.E157K 0.08 deleterious(0) possibly_damaging(0.477) TCGA-CA-6717-01 3 122964829 122964829 C T SEC22A Nonsense_Mutation p.R209* 0.22 TCGA-CA-6717-01 3 123036942 123036942 C T ADCY5 Missense_Mutation p.R760Q 0.18 tolerated(0.06) possibly_damaging(0.781) TCGA-CA-6717-01 3 123219424 123219424 T G PTPLB Missense_Mutation p.K207T 0.13 deleterious(0.05) probably_damaging(0.998) TCGA-CA-6717-01 3 123366231 123366231 G A MYLK Nonsense_Mutation p.R1487* 0.08 TCGA-CA-6717-01 3 123426687 123426687 G A MYLK Silent p.F768F 0.28 TCGA-CA-6717-01 3 123426737 123426737 C T MYLK Missense_Mutation p.V752M 0.26 deleterious(0) benign(0.109) TCGA-CA-6717-01 3 123451927 123451927 T A MYLK Missense_Mutation p.E444D 0.13 tolerated(0.35) possibly_damaging(0.476) TCGA-CA-6717-01 3 123452795 123452795 C T MYLK Missense_Mutation p.A350T 0.18 tolerated(0.67) possibly_damaging(0.636) TCGA-CA-6717-01 3 123633632 123633632 C A CCDC14 Missense_Mutation p.E911D 0.13 deleterious(0.02) possibly_damaging(0.801) TCGA-CA-6717-01 3 123665674 123665674 G A CCDC14 Missense_Mutation p.L400F 0.14 deleterious(0) probably_damaging(0.934) TCGA-CA-6717-01 3 123674734 123674734 C A CCDC14 Intron 0.14 TCGA-CA-6717-01 3 123674736 123674736 T G CCDC14 Intron 0.15 TCGA-CA-6717-01 3 12393166 12393166 A T PPARG Silent p.I25I 0.10 TCGA-CA-6717-01 3 124153331 124153331 T G KALRN Missense_Mutation p.L1001V 0.24 deleterious(0) probably_damaging(0.966) TCGA-CA-6717-01 3 124211698 124211698 A G KALRN Missense_Mutation p.T1599A 0.22 tolerated(0.15) benign(0.005) TCGA-CA-6717-01 3 124237249 124237249 T C KALRN Silent p.D1644D 0.18 TCGA-CA-6717-01 3 124415036 124415036 A G AC080008.1 3'Flank 0.20 TCGA-CA-6717-01 3 124456719 124456719 C A UMPS Silent p.V205V 0.14 TCGA-CA-6717-01 3 124462825 124462825 T G UMPS Missense_Mutation p.I446S 0.12 deleterious(0) probably_damaging(0.934) TCGA-CA-6717-01 3 124689639 124689639 T G HEG1 Missense_Mutation p.S1335R 0.11 tolerated(0.06) possibly_damaging(0.467) TCGA-CA-6717-01 3 124720703 124720703 G T HEG1 Silent p.I1170I 0.08 TCGA-CA-6717-01 3 124739746 124739746 G A HEG1 Missense_Mutation p.S381L 0.22 tolerated(0.49) benign(0.001) TCGA-CA-6717-01 3 124952499 124952499 A G ZNF148 Silent p.D357D 0.14 TCGA-CA-6717-01 3 125007037 125007037 T C ZNF148 Silent p.V123V 0.19 TCGA-CA-6717-01 3 125007055 125007055 T G ZNF148 Missense_Mutation p.E117D 0.10 tolerated(0.39) probably_damaging(0.978) TCGA-CA-6717-01 3 125295158 125295158 A C OSBPL11 Missense_Mutation p.S181A 0.13 deleterious(0.04) probably_damaging(0.99) TCGA-CA-6717-01 3 125725245 125725245 G T SLC41A3 3'UTR 0.13 TCGA-CA-6717-01 3 125726059 125726059 G T SLC41A3 Missense_Mutation p.L422M 0.10 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 3 126062473 126062473 C T KLF15 3'UTR 0.23 TCGA-CA-6717-01 3 126062510 126062510 A - KLF15 3'UTR 0.12 TCGA-CA-6717-01 3 126126016 126126016 G A CCDC37 Silent p.K17K 0.08 TCGA-CA-6717-01 3 126178522 126178522 T G ZXDC Missense_Mutation p.K729T 0.22 deleterious(0) possibly_damaging(0.894) TCGA-CA-6717-01 3 126236546 126236546 G A UROC1 Missense_Mutation p.A6V 0.25 tolerated(0.2) benign(0.001) TCGA-CA-6717-01 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.18 deleterious(0.01) benign(0.226) TCGA-CA-6717-01 3 127786324 127786324 T C SEC61A1 Missense_Mutation p.S346P 0.13 deleterious(0.01) probably_damaging(0.939) TCGA-CA-6717-01 3 127823697 127823697 C A RUVBL1 Missense_Mutation p.E144D 0.13 tolerated(0.34) benign(0.02) TCGA-CA-6717-01 3 128205084 128205084 G T GATA2 Missense_Mutation p.S119R 0.11 deleterious(0) benign(0.1) TCGA-CA-6717-01 3 128516837 128516837 T G RAB7A Missense_Mutation p.N35K 0.07 tolerated(0.22) benign(0.38) TCGA-CA-6717-01 3 12859262 12859262 G A CAND2 Missense_Mutation p.R944H 0.22 tolerated(1) benign(0.001) TCGA-CA-6717-01 3 12875379 12875379 C A CAND2 Missense_Mutation p.F1203L 0.15 tolerated(0.15) probably_damaging(0.999) TCGA-CA-6717-01 3 128757673 128757673 G T EFCC1 Splice_Site p.X531_splice 0.19 TCGA-CA-6717-01 3 128757690 128757690 C T EFCC1 Missense_Mutation p.A536V 0.11 deleterious(0.05) possibly_damaging(0.509) TCGA-CA-6717-01 3 128859249 128859249 T C ISY1 Missense_Mutation p.K127R 0.13 tolerated(0.22) benign(0.045) TCGA-CA-6717-01 3 128971496 128971496 G A COPG1 Missense_Mutation p.E68K 0.17 deleterious(0.01) possibly_damaging(0.615) TCGA-CA-6717-01 3 129120572 129120572 G A EFCAB12 Missense_Mutation p.A528V 0.09 tolerated(0.22) benign(0.043) TCGA-CA-6717-01 3 129151267 129151267 A C MBD4 Intron 0.12 TCGA-CA-6717-01 3 129151945 129151945 G T MBD4 Missense_Mutation p.F519L 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 129170773 129170773 A C IFT122 Missense_Mutation p.D42A 0.09 deleterious(0) possibly_damaging(0.786) TCGA-CA-6717-01 3 129277360 129277360 C T PLXND1 Missense_Mutation p.D1786N 0.41 deleterious(0.03) possibly_damaging(0.448) TCGA-CA-6717-01 3 129284273 129284273 C A PLXND1 Missense_Mutation p.K1477N 0.25 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 3 12977371 12977371 G A IQSEC1 Missense_Mutation p.S396L 0.29 deleterious_low_confidence(0) benign(0.155) TCGA-CA-6717-01 3 129811041 129811041 C A RP11-93K22.13 Intron 0.11 TCGA-CA-6717-01 3 130103844 130103844 T C COL6A5 Missense_Mutation p.S500P 0.14 tolerated(0.07) benign(0.033) TCGA-CA-6717-01 3 130107636 130107636 C A COL6A5 Missense_Mutation p.S692Y 0.13 tolerated(1) benign(0.019) TCGA-CA-6717-01 3 130124492 130124492 T C COL6A5 Missense_Mutation p.W1448R 0.10 tolerated(1) benign(0) TCGA-CA-6717-01 3 130150362 130150362 G A COL6A5 Missense_Mutation p.D1768N 0.15 deleterious(0.05) possibly_damaging(0.493) TCGA-CA-6717-01 3 130150392 130150392 C T COL6A5 Missense_Mutation p.R1778W 0.32 deleterious(0) probably_damaging(0.945) TCGA-CA-6717-01 3 130279232 130279232 C T COL6A6 Silent p.L8L 0.14 TCGA-CA-6717-01 3 130287283 130287283 C T COL6A6 Missense_Mutation p.R746W 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 130292807 130292807 A G COL6A6 Silent p.E995E 0.11 TCGA-CA-6717-01 3 130367941 130367941 C T COL6A6 Silent p.T1756T 0.14 TCGA-CA-6717-01 3 130447356 130447356 A G PIK3R4 Silent p.N586N 0.09 TCGA-CA-6717-01 3 130675020 130675020 A C ATP2C1 Missense_Mutation p.I311L 0.17 deleterious(0) possibly_damaging(0.805) TCGA-CA-6717-01 3 130698221 130698221 A C ATP2C1 Missense_Mutation p.K601Q 0.10 deleterious(0.01) probably_damaging(0.937) TCGA-CA-6717-01 3 130711837 130711837 A G ATP2C1 Missense_Mutation p.I662V 0.11 deleterious(0.01) possibly_damaging(0.873) TCGA-CA-6717-01 3 130871486 130871486 A C NEK11 Missense_Mutation p.K270T 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 130884283 130884283 G T NEK11 Nonsense_Mutation p.E366* 0.16 TCGA-CA-6717-01 3 131208880 131208880 C T MRPL3 Silent p.P171P 0.11 TCGA-CA-6717-01 3 131254013 131254013 G T CPNE4 3'UTR 0.18 TCGA-CA-6717-01 3 131624287 131624287 T C CPNE4 Translation_Start_Site p.M1? 0.13 tolerated_low_confidence(0.05) benign(0.019) TCGA-CA-6717-01 3 132179159 132179159 G T DNAJC13 Missense_Mutation p.K505N 0.09 tolerated(0.1) benign(0.036) TCGA-CA-6717-01 3 132198070 132198070 G T DNAJC13 Splice_Site p.X904_splice 0.12 TCGA-CA-6717-01 3 132207144 132207144 A G DNAJC13 Silent p.L1090L 0.25 TCGA-CA-6717-01 3 132230066 132230066 A G DNAJC13 Silent p.R1757R 0.10 TCGA-CA-6717-01 3 132235305 132235305 C T DNAJC13 Missense_Mutation p.S1842L 0.07 deleterious(0) probably_damaging(0.921) TCGA-CA-6717-01 3 132245108 132245108 A C DNAJC13 Missense_Mutation p.S2122R 0.21 tolerated(0.1) benign(0.035) TCGA-CA-6717-01 3 132280028 132280028 T C ACAD11 Missense_Mutation p.I679V 0.24 tolerated(0.46) benign(0.031) TCGA-CA-6717-01 3 132337418 132337418 G A ACAD11 Intron 0.18 TCGA-CA-6717-01 3 132338375 132338375 G T ACAD11 Missense_Mutation p.F404L 0.16 tolerated(0.23) benign(0.178) TCGA-CA-6717-01 3 132345657 132345657 A C ACAD11 Missense_Mutation p.F359V 0.09 tolerated(0.25) benign(0.011) TCGA-CA-6717-01 3 132384704 132384704 G A UBA5 Missense_Mutation p.D67N 0.19 tolerated(1) benign(0.001) TCGA-CA-6717-01 3 132420336 132420336 C T NPHP3 Silent p.P522P 0.20 TCGA-CA-6717-01 3 132435639 132435639 G T NPHP3 Missense_Mutation p.S262Y 0.23 tolerated(0.32) benign(0.406) TCGA-CA-6717-01 3 133099767 133099767 T C TMEM108 Silent p.T404T 0.32 TCGA-CA-6717-01 3 133167355 133167355 C T BFSP2 Nonsense_Mutation p.R199* 0.18 TCGA-CA-6717-01 3 133335749 133335749 A C TOPBP1 Silent p.T1260T 0.19 TCGA-CA-6717-01 3 133368692 133368692 A C TOPBP1 Missense_Mutation p.D395E 0.21 tolerated(0.36) benign(0.002) TCGA-CA-6717-01 3 133478065 133478065 G A TF Silent p.A365A 0.27 TCGA-CA-6717-01 3 133553479 133553479 G T RAB6B Silent p.R168R 0.26 TCGA-CA-6717-01 3 133698373 133698373 G T SLCO2A1 Silent p.R62R 0.12 TCGA-CA-6717-01 3 133894509 133894509 G A RYK Missense_Mutation p.R508C 0.14 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 3 133896901 133896901 T C RYK Missense_Mutation p.T398A 0.12 tolerated(0.18) benign(0.033) TCGA-CA-6717-01 3 133907759 133907759 C A RYK Missense_Mutation p.G343W 0.15 deleterious(0) possibly_damaging(0.609) TCGA-CA-6717-01 3 133941271 133941271 C T RYK Silent p.A113A 0.14 TCGA-CA-6717-01 3 13395067 13395067 C A NUP210 Missense_Mutation p.R872I 0.08 tolerated(0.23) benign(0.04) TCGA-CA-6717-01 3 134322796 134322796 G T KY Silent p.I537I 0.23 TCGA-CA-6717-01 3 134898814 134898814 C A EPHB1 Silent p.V624V 0.20 TCGA-CA-6717-01 3 135721407 135721407 A G PPP2R3A Missense_Mutation p.D356G 0.11 tolerated_low_confidence(0.24) benign(0.049) TCGA-CA-6717-01 3 135721419 135721419 C A PPP2R3A Missense_Mutation p.S360Y 0.23 tolerated_low_confidence(0.09) benign(0.001) TCGA-CA-6717-01 3 135721560 135721560 C A PPP2R3A Missense_Mutation p.S407Y 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-CA-6717-01 3 135722041 135722041 C A PPP2R3A Silent p.V567V 0.21 TCGA-CA-6717-01 3 135809473 135809473 T C PPP2R3A Missense_Mutation p.F964S 0.15 deleterious(0) probably_damaging(0.943) TCGA-CA-6717-01 3 13611853 13611853 A G FBLN2 5'UTR 0.22 TCGA-CA-6717-01 3 136219118 136219118 T G STAG1 Missense_Mutation p.E283D 0.17 tolerated(0.07) benign(0.071) TCGA-CA-6717-01 3 136261013 136261013 C T STAG1 Missense_Mutation p.R140Q 0.09 tolerated(0.76) benign(0.017) TCGA-CA-6717-01 3 136573441 136573441 A C SLC35G2 Missense_Mutation p.N47H 0.17 deleterious(0.01) benign(0.155) TCGA-CA-6717-01 3 136574367 136574367 T G SLC35G2 Missense_Mutation p.I355M 0.17 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 3 13660438 13660438 G A FBLN2 Silent p.E658E 0.10 TCGA-CA-6717-01 3 13668001 13668001 A C FBLN2 Missense_Mutation p.N785H 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 136710777 136710777 A G IL20RB Intron 0.21 TCGA-CA-6717-01 3 13679215 13679215 C T FBLN2 Silent p.I1164I 0.14 TCGA-CA-6717-01 3 137743464 137743464 C T CLDN18 Missense_Mutation p.A134V 0.18 tolerated(0.77) benign(0.011) TCGA-CA-6717-01 3 137811255 137811255 A G DZIP1L Silent p.N280N 0.17 TCGA-CA-6717-01 3 137813809 137813809 C A DZIP1L Missense_Mutation p.Q201H 0.23 deleterious(0.01) possibly_damaging(0.907) TCGA-CA-6717-01 3 137893515 137893515 C T DBR1 Silent p.Q41Q 0.12 TCGA-CA-6717-01 3 138374235 138374235 G T PIK3CB Missense_Mutation p.S1070Y 0.14 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-CA-6717-01 3 138433361 138433361 C T PIK3CB Silent p.T417T 0.19 TCGA-CA-6717-01 3 138461545 138461545 T C PIK3CB Missense_Mutation p.K159R 0.12 tolerated(0.67) benign(0.005) TCGA-CA-6717-01 3 138461575 138461575 C T PIK3CB Missense_Mutation p.R149Q 0.19 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 3 13860669 13860669 C T WNT7A Silent p.S274S 0.07 TCGA-CA-6717-01 3 139075824 139075824 G T MRPS22 Nonsense_Mutation p.E351* 0.10 TCGA-CA-6717-01 3 13916642 13916642 C T WNT7A Missense_Mutation p.A34T 0.41 deleterious(0.04) benign(0.362) TCGA-CA-6717-01 3 140139994 140139994 G A CLSTN2 Missense_Mutation p.S222N 0.17 tolerated(0.57) benign(0.007) TCGA-CA-6717-01 3 140419814 140419814 T C TRIM42 Nonstop_Mutation p.*724Rext*53 0.11 TCGA-CA-6717-01 3 140678349 140678349 T G SLC25A36 Missense_Mutation p.L84R 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 140695147 140695147 C A SLC25A36 Missense_Mutation p.S263Y 0.14 deleterious(0.05) possibly_damaging(0.841) TCGA-CA-6717-01 3 141497326 141497326 G A GRK7 Missense_Mutation p.R67H 0.12 deleterious(0.02) probably_damaging(0.967) TCGA-CA-6717-01 3 141632659 141632659 T C ATP1B3 Missense_Mutation p.I171T 0.21 deleterious(0) possibly_damaging(0.772) TCGA-CA-6717-01 3 142102221 142102221 A C XRN1 Missense_Mutation p.I846S 0.07 tolerated(0.09) benign(0.032) TCGA-CA-6717-01 3 142119331 142119331 T G XRN1 Missense_Mutation p.H721P 0.08 deleterious(0) probably_damaging(0.947) TCGA-CA-6717-01 3 142144140 142144140 A C XRN1 Missense_Mutation p.F184C 0.16 deleterious(0) probably_damaging(0.968) TCGA-CA-6717-01 3 142144309 142144309 A G XRN1 Missense_Mutation p.S160P 0.11 tolerated(0.21) possibly_damaging(0.611) TCGA-CA-6717-01 3 142144325 142144325 T G XRN1 Missense_Mutation p.K154N 0.20 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 3 142231170 142231170 T G ATR Missense_Mutation p.K1595T 0.19 tolerated(0.05) benign(0.306) TCGA-CA-6717-01 3 14223147 14223147 C T LSM3 Nonsense_Mutation p.R37* 0.26 TCGA-CA-6717-01 3 142254967 142254967 G A ATR Missense_Mutation p.L1268F 0.14 deleterious(0) probably_damaging(0.951) TCGA-CA-6717-01 3 142257334 142257334 T G ATR Missense_Mutation p.I1239L 0.15 tolerated(0.3) benign(0) TCGA-CA-6717-01 3 142266692 142266692 C A ATR Nonsense_Mutation p.E1078* 0.14 TCGA-CA-6717-01 3 142395008 142395008 A C PLS1 Missense_Mutation p.K125T 0.12 tolerated(0.08) probably_damaging(0.994) TCGA-CA-6717-01 3 142408571 142408571 T G PLS1 Missense_Mutation p.L365V 0.22 deleterious(0.04) benign(0.178) TCGA-CA-6717-01 3 142422794 142422794 G T PLS1 Nonsense_Mutation p.E486* 0.20 TCGA-CA-6717-01 3 142467113 142467113 G A TRPC1 Missense_Mutation p.R148Q 0.12 tolerated(0.54) benign(0.008) TCGA-CA-6717-01 3 142557634 142557634 A C PCOLCE2 Missense_Mutation p.Y230D 0.20 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 3 142681084 142681084 C T PAQR9 Silent p.R365R 0.20 TCGA-CA-6717-01 3 1427357 1427357 T G CNTN6 Missense_Mutation p.N860K 0.08 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 3 143082396 143082396 T G SLC9A9 Missense_Mutation p.N512H 0.11 tolerated(0.13) benign(0.188) TCGA-CA-6717-01 3 143297461 143297461 G T SLC9A9 Missense_Mutation p.A287E 0.27 tolerated(0.12) possibly_damaging(0.807) TCGA-CA-6717-01 3 143515696 143515696 A T SLC9A9 Missense_Mutation p.I143K 0.09 deleterious(0) possibly_damaging(0.565) TCGA-CA-6717-01 3 143567080 143567080 A C SLC9A9 Missense_Mutation p.F29V 0.10 tolerated(0.24) benign(0.094) TCGA-CA-6717-01 3 1445017 1445017 G A CNTN6 Missense_Mutation p.G1001E 0.12 deleterious(0.01) probably_damaging(0.952) TCGA-CA-6717-01 3 145809613 145809613 C T PLOD2 Missense_Mutation p.D285N 0.21 tolerated(0.32) benign(0.024) TCGA-CA-6717-01 3 145820596 145820596 C A PLOD2 Missense_Mutation p.K241N 0.23 deleterious(0.01) possibly_damaging(0.624) TCGA-CA-6717-01 3 145917787 145917787 T G PLSCR4 Missense_Mutation p.K146T 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 3 146167088 146167088 C A PLSCR2 Nonsense_Mutation p.E257* 0.23 TCGA-CA-6717-01 3 146173150 146173150 C T PLSCR2 Missense_Mutation p.R139Q 0.20 deleterious(0.01) possibly_damaging(0.823) TCGA-CA-6717-01 3 146239804 146239804 A C PLSCR1 Missense_Mutation p.I131S 0.22 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 3 147109008 147109008 G A ZIC4 Silent p.F288F 0.24 TCGA-CA-6717-01 3 147130465 147130465 G T ZIC1 Missense_Mutation p.M381I 0.17 deleterious(0) probably_damaging(0.968) TCGA-CA-6717-01 3 148460172 148460172 G T AGTR1 3'UTR 0.17 TCGA-CA-6717-01 3 148596231 148596231 C A CPA3 Silent p.I91I 0.20 TCGA-CA-6717-01 3 148789158 148789158 C A HLTF Nonsense_Mutation p.E259* 0.10 TCGA-CA-6717-01 3 148905920 148905920 C A CP Missense_Mutation p.D595Y 0.28 deleterious(0) possibly_damaging(0.885) TCGA-CA-6717-01 3 148917557 148917557 T G CP Missense_Mutation p.R481S 0.16 tolerated(0.45) benign(0.018) TCGA-CA-6717-01 3 149192665 149192665 A G TM4SF4 Translation_Start_Site p.M1? 0.20 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 149485255 149485255 C T ANKUB1 Silent p.P398P 0.23 TCGA-CA-6717-01 3 149488389 149488389 A C ANKUB1 Missense_Mutation p.L175R 0.10 tolerated(0.46) benign(0.235) TCGA-CA-6717-01 3 149677897 149677897 A G RNF13 Missense_Mutation p.K252R 0.18 tolerated(0.13) possibly_damaging(0.452) TCGA-CA-6717-01 3 150140881 150140881 A G TSC22D2 Silent p.L668L 0.11 TCGA-CA-6717-01 3 150299495 150299495 G T EIF2A Missense_Mutation p.D530Y 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-CA-6717-01 3 150387168 150387168 C A FAM194A Nonsense_Mutation p.E472* 0.28 TCGA-CA-6717-01 3 150845633 150845633 G T MED12L Nonsense_Mutation p.E140* 0.19 TCGA-CA-6717-01 3 151012144 151012144 T C GPR87 Missense_Mutation p.E297G 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 151012382 151012382 C T GPR87 Missense_Mutation p.V218M 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 151046163 151046163 A C P2RY13 Missense_Mutation p.F227L 0.23 tolerated(0.12) benign(0.403) TCGA-CA-6717-01 3 151090477 151090477 T C MED12L Missense_Mutation p.C1228R 0.09 tolerated(0.57) benign(0.001) TCGA-CA-6717-01 3 151154843 151154843 T G IGSF10 Silent p.G2502G 0.19 TCGA-CA-6717-01 3 151154958 151154958 A C IGSF10 Missense_Mutation p.I2464S 0.17 deleterious(0) possibly_damaging(0.833) TCGA-CA-6717-01 3 151155204 151155204 C A IGSF10 Missense_Mutation p.G2382V 0.19 deleterious(0.04) benign(0.236) TCGA-CA-6717-01 3 151156090 151156090 C T IGSF10 Missense_Mutation p.D2087N 0.08 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 3 151163086 151163086 C A IGSF10 Missense_Mutation p.Q1561H 0.17 tolerated(0.08) benign(0.169) TCGA-CA-6717-01 3 151165045 151165045 C A IGSF10 Missense_Mutation p.Q908H 0.10 deleterious(0.02) possibly_damaging(0.565) TCGA-CA-6717-01 3 151166062 151166062 T C IGSF10 Silent p.V569V 0.19 TCGA-CA-6717-01 3 151171179 151171179 C A IGSF10 Missense_Mutation p.E236D 0.36 tolerated(0.06) benign(0.165) TCGA-CA-6717-01 3 151176406 151176406 C T IGSF10 Missense_Mutation p.R31H 0.09 tolerated(0.05) benign(0.061) TCGA-CA-6717-01 3 15118612 15118612 C T ZFYVE20 Missense_Mutation p.R353Q 0.08 tolerated(1) benign(0.006) TCGA-CA-6717-01 3 151461882 151461882 A G AADACL2 Silent p.K121K 0.10 TCGA-CA-6717-01 3 151545414 151545414 T G AADAC Missense_Mutation p.I218M 0.20 deleterious(0.02) probably_damaging(0.964) TCGA-CA-6717-01 3 151598537 151598537 A G SUCNR1 Missense_Mutation p.D69G 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 152554788 152554788 A C P2RY1 3'UTR 0.18 TCGA-CA-6717-01 3 15282356 15282356 C A CAPN7 Missense_Mutation p.H550N 0.14 deleterious(0.04) possibly_damaging(0.803) TCGA-CA-6717-01 3 153842229 153842229 G T ARHGEF26 Missense_Mutation p.D372Y 0.32 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 3 153870720 153870720 A C ARHGEF26 Missense_Mutation p.K496Q 0.17 deleterious(0) possibly_damaging(0.688) TCGA-CA-6717-01 3 154139028 154139028 T G GPR149 Missense_Mutation p.N475H 0.09 tolerated(0.14) possibly_damaging(0.778) TCGA-CA-6717-01 3 154139173 154139173 G T GPR149 Missense_Mutation p.F426L 0.21 deleterious(0.02) benign(0.009) TCGA-CA-6717-01 3 154834321 154834321 G A MME Missense_Mutation p.A138T 0.16 tolerated(1) benign(0) TCGA-CA-6717-01 3 154834776 154834776 G A MME Splice_Site p.X218_splice 0.08 TCGA-CA-6717-01 3 154855939 154855939 C T MME Missense_Mutation p.R257C 0.12 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 3 154864956 154864956 C T MME Silent p.I480I 0.13 TCGA-CA-6717-01 3 15498007 15498007 G T COLQ Missense_Mutation p.S345Y 0.24 deleterious(0.01) unknown(0) TCGA-CA-6717-01 3 155311765 155311765 T G PLCH1 Missense_Mutation p.E133D 0.17 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 3 15540056 15540056 G T COLQ Intron 0.18 TCGA-CA-6717-01 3 155615742 155615742 A C GMPS Missense_Mutation p.N79T 0.22 tolerated(0.09) benign(0.242) TCGA-CA-6717-01 3 15616527 15616527 A C HACL1 Missense_Mutation p.F289C 0.21 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 3 15628080 15628080 G T HACL1 Missense_Mutation p.F137L 0.15 tolerated(0.45) benign(0.029) TCGA-CA-6717-01 3 156395884 156395884 G A TIPARP Missense_Mutation p.R133Q 0.10 tolerated_low_confidence(1) benign(0) TCGA-CA-6717-01 3 156422927 156422927 T C TIPARP 3'UTR 0.17 TCGA-CA-6717-01 3 156742708 156742708 A G LEKR1 Missense_Mutation p.M455V 0.20 tolerated(0.13) benign(0.043) TCGA-CA-6717-01 3 15685964 15685964 A G BTD Missense_Mutation p.S201G 0.10 deleterious(0.04) possibly_damaging(0.466) TCGA-CA-6717-01 3 157146115 157146115 A T VEPH1 Missense_Mutation p.L231H 0.08 tolerated(0.32) benign(0.365) TCGA-CA-6717-01 3 157188265 157188265 T G VEPH1 Missense_Mutation p.R64S 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 157289761 157289761 C T C3orf55 Silent p.F77F 0.18 TCGA-CA-6717-01 3 157816104 157816104 A C SHOX2 Missense_Mutation p.S260R 0.20 tolerated(0.08) possibly_damaging(0.673) TCGA-CA-6717-01 3 158254923 158254923 T C RSRC1 Missense_Mutation p.I232T 0.25 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-CA-6717-01 3 158364054 158364054 A C GFM1 Missense_Mutation p.K112T 0.18 deleterious(0.03) benign(0.257) TCGA-CA-6717-01 3 158376717 158376717 C T GFM1 Nonsense_Mutation p.R364* 0.26 TCGA-CA-6717-01 3 158388749 158388749 T G LXN Missense_Mutation p.Q63H 0.09 tolerated(0.25) benign(0.002) TCGA-CA-6717-01 3 158390214 158390214 C T LXN Silent p.Q18Q 0.10 TCGA-CA-6717-01 3 158399908 158399908 T C GFM1 Missense_Mutation p.S576P 0.24 deleterious(0.03) benign(0.003) TCGA-CA-6717-01 3 158415755 158415755 G A RARRES1 Missense_Mutation p.T226I 0.07 deleterious(0.04) probably_damaging(0.985) TCGA-CA-6717-01 3 159995412 159995412 C T IFT80 Missense_Mutation p.R628Q 0.07 tolerated(0.16) benign(0.003) TCGA-CA-6717-01 3 160150960 160150960 A G SMC4 Missense_Mutation p.D1226G 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 160248691 160248691 T G KPNA4 Missense_Mutation p.N141H 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 160395818 160395818 T C ARL14 3'UTR 0.10 TCGA-CA-6717-01 3 160786750 160786750 C A PPM1L Missense_Mutation p.F296L 0.27 deleterious(0) probably_damaging(0.967) TCGA-CA-6717-01 3 160804109 160804109 C T B3GALNT1 Missense_Mutation p.R145Q 0.12 tolerated(0.69) benign(0.016) TCGA-CA-6717-01 3 161063980 161063980 C T SPTSSB Missense_Mutation p.M44I 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 3 161220131 161220131 G A OTOL1 Missense_Mutation p.G164E 0.20 deleterious(0) unknown(0) TCGA-CA-6717-01 3 16237290 16237290 A C GALNT15 Missense_Mutation p.D188A 0.10 tolerated(0.34) benign(0.004) TCGA-CA-6717-01 3 16268972 16268972 C T GALNT15 Missense_Mutation p.R629C 0.16 deleterious(0.02) possibly_damaging(0.708) TCGA-CA-6717-01 3 16336471 16336471 G A OXNAD1 Silent p.T133T 0.20 TCGA-CA-6717-01 3 16343361 16343361 G A OXNAD1 Missense_Mutation p.E221K 0.18 deleterious(0) probably_damaging(0.975) TCGA-CA-6717-01 3 16450885 16450885 C A RFTN1 Missense_Mutation p.K146N 0.26 deleterious(0.01) probably_damaging(0.928) TCGA-CA-6717-01 3 164748583 164748583 C T SI Missense_Mutation p.E937K 0.16 tolerated(0.08) benign(0.186) TCGA-CA-6717-01 3 164907988 164907988 G T SLITRK3 Missense_Mutation p.L211I 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 165547803 165547803 A C BCHE Missense_Mutation p.F340C 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-CA-6717-01 3 16638546 16638546 A C DAZL Missense_Mutation p.F123V 0.09 deleterious(0.01) benign(0.219) TCGA-CA-6717-01 3 166958694 166958694 C A ZBBX Missense_Mutation p.D803Y 0.20 deleterious(0.04) possibly_damaging(0.592) TCGA-CA-6717-01 3 167000023 167000023 T G ZBBX Intron 0.10 TCGA-CA-6717-01 3 167023649 167023649 C A ZBBX Nonsense_Mutation p.E503* 0.23 TCGA-CA-6717-01 3 167023731 167023731 A C ZBBX Silent p.T475T 0.09 TCGA-CA-6717-01 3 167031880 167031880 C A ZBBX Missense_Mutation p.K433N 0.10 tolerated(0.06) possibly_damaging(0.73) TCGA-CA-6717-01 3 167170727 167170727 T C SERPINI2 Missense_Mutation p.T321A 0.12 tolerated(0.07) benign(0.147) TCGA-CA-6717-01 3 167250749 167250749 T G WDR49 Missense_Mutation p.E305D 0.18 tolerated(0.05) probably_damaging(0.994) TCGA-CA-6717-01 3 167727901 167727901 C A GOLIM4 3'UTR 0.25 TCGA-CA-6717-01 3 167766125 167766125 C A GOLIM4 Missense_Mutation p.E72D 0.29 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 168833983 168833983 G A MECOM Silent p.L436L 0.18 TCGA-CA-6717-01 3 168849320 168849320 C A MECOM Splice_Site p.X47_splice 0.12 TCGA-CA-6717-01 3 169492228 169492228 T C MYNN Missense_Mutation p.F49L 0.08 tolerated(0.07) probably_damaging(0.998) TCGA-CA-6717-01 3 169540353 169540353 A C LRRIQ4 Missense_Mutation p.K215T 0.16 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 169574263 169574263 G A LRRC31 Silent p.L228L 0.26 TCGA-CA-6717-01 3 169703648 169703648 T A SEC62 Missense_Mutation p.I202N 0.16 deleterious(0) benign(0.126) TCGA-CA-6717-01 3 169802261 169802261 G T GPR160 Missense_Mutation p.Q167H 0.09 tolerated(0.16) benign(0.014) TCGA-CA-6717-01 3 169847045 169847045 C T PHC3 Silent p.Q405Q 0.11 TCGA-CA-6717-01 3 170108125 170108125 C T SKIL Missense_Mutation p.P515L 0.07 deleterious(0.04) benign(0.007) TCGA-CA-6717-01 3 170108901 170108901 A C SKIL Missense_Mutation p.E583D 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 3 170204128 170204128 G A SLC7A14 Silent p.Y263Y 0.22 TCGA-CA-6717-01 3 17052865 17052865 T C PLCL2 Missense_Mutation p.F550S 0.16 deleterious(0.01) benign(0.388) TCGA-CA-6717-01 3 170612158 170612158 G A EIF5A2 Missense_Mutation p.R109C 0.18 deleterious(0.02) possibly_damaging(0.632) TCGA-CA-6717-01 3 170727845 170727845 A C SLC2A2 Missense_Mutation p.I133S 0.12 tolerated(0.26) benign(0.014) TCGA-CA-6717-01 3 170802096 170802096 A G TNIK Missense_Mutation p.L1006P 0.09 tolerated(0.32) probably_damaging(0.943) TCGA-CA-6717-01 3 170841382 170841382 T G TNIK Intron 0.13 TCGA-CA-6717-01 3 172046847 172046847 C T FNDC3B Nonsense_Mutation p.R454* 0.15 TCGA-CA-6717-01 3 172224123 172224123 T G TNFSF10 3'UTR 0.15 TCGA-CA-6717-01 3 172351568 172351568 G C NCEH1 Silent p.G348G 0.09 TCGA-CA-6717-01 3 172694768 172694768 A C SPATA16 Missense_Mutation p.L308R 0.23 tolerated(0.09) possibly_damaging(0.883) TCGA-CA-6717-01 3 172834974 172834974 G A SPATA16 Missense_Mutation p.A183V 0.17 deleterious(0) possibly_damaging(0.682) TCGA-CA-6717-01 3 173997237 173997237 T C NLGN1 Silent p.P482P 0.11 TCGA-CA-6717-01 3 173997332 173997332 G T NLGN1 Missense_Mutation p.G514V 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 17444739 17444739 C A TBC1D5 Missense_Mutation p.S148I 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 17448028 17448028 A C TBC1D5 Intron 0.17 TCGA-CA-6717-01 3 174814724 174814724 A C NAALADL2 Missense_Mutation p.Q63P 0.11 deleterious(0.01) possibly_damaging(0.642) TCGA-CA-6717-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.20 tolerated(0.06) probably_damaging(0.998) TCGA-CA-6717-01 3 178948136 178948136 G A PIK3CA Missense_Mutation p.E970K 0.18 tolerated(0.51) benign(0.05) TCGA-CA-6717-01 3 178951989 178951989 C A PIK3CA Missense_Mutation p.S1015Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 178961006 178961006 C A KCNMB3 Nonsense_Mutation p.E176* 0.19 TCGA-CA-6717-01 3 179046084 179046084 G A ZNF639 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-CA-6717-01 3 179305914 179305914 A G ACTL6A 3'UTR 0.23 TCGA-CA-6717-01 3 179593215 179593215 G A PEX5L Nonsense_Mutation p.R186* 0.08 TCGA-CA-6717-01 3 179605499 179605499 G A PEX5L Missense_Mutation p.S91L 0.07 deleterious_low_confidence(0.03) benign(0.102) TCGA-CA-6717-01 3 180332709 180332709 T G CCDC39 Nonstop_Mutation p.*942Yext*3 0.17 TCGA-CA-6717-01 3 180334357 180334357 T C CCDC39 Missense_Mutation p.I845V 0.17 tolerated(1) benign(0.001) TCGA-CA-6717-01 3 180359778 180359778 T G CCDC39 Intron 0.21 TCGA-CA-6717-01 3 180364928 180364928 T G CCDC39 Missense_Mutation p.K489T 0.16 tolerated(0.06) benign(0.137) TCGA-CA-6717-01 3 180378363 180378363 T - CCDC39 Frame_Shift_Del p.I171Sfs*4 0.13 TCGA-CA-6717-01 3 181431275 181431275 A G SOX2 3'UTR 0.23 TCGA-CA-6717-01 3 182607224 182607224 G A ATP11B Missense_Mutation p.S957N 0.24 tolerated(0.14) benign(0.252) TCGA-CA-6717-01 3 182988787 182988787 A C B3GNT5 3'UTR 0.14 TCGA-CA-6717-01 3 182990060 182990060 G T MCF2L2 Intron 0.19 TCGA-CA-6717-01 3 182990540 182990540 T G MCF2L2 Intron 0.15 TCGA-CA-6717-01 3 182990725 182990725 T G MCF2L2 Intron 0.21 TCGA-CA-6717-01 3 183056668 183056668 G A MCF2L2 Missense_Mutation p.R136C 0.22 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 183059355 183059355 G A MCF2L2 Silent p.S113S 0.10 TCGA-CA-6717-01 3 183097151 183097151 G A MCF2L2 Missense_Mutation p.S70L 0.13 tolerated(0.19) benign(0.009) TCGA-CA-6717-01 3 183212027 183212027 G A KLHL6 Missense_Mutation p.S397L 0.11 tolerated(0.12) possibly_damaging(0.754) TCGA-CA-6717-01 3 183217382 183217382 G T KLHL6 Silent p.I381I 0.13 TCGA-CA-6717-01 3 183217608 183217608 G A KLHL6 Missense_Mutation p.S306L 0.24 deleterious(0) benign(0.163) TCGA-CA-6717-01 3 183273330 183273330 A C KLHL6 Missense_Mutation p.L38V 0.25 tolerated(0.41) benign(0.004) TCGA-CA-6717-01 3 183397025 183397025 A G KLHL24 Missense_Mutation p.H585R 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 183551527 183551527 C T PARL Silent p.T305T 0.17 TCGA-CA-6717-01 3 183562033 183562033 G A PARL Missense_Mutation p.S198L 0.09 deleterious(0) benign(0.133) TCGA-CA-6717-01 3 183645175 183645175 G A ABCC5 Silent p.F1330F 0.21 TCGA-CA-6717-01 3 183705554 183705554 T G ABCC5 Intron 0.13 TCGA-CA-6717-01 3 183705659 183705659 C T ABCC5 Missense_Mutation p.A164T 0.12 tolerated(0.06) benign(0.001) TCGA-CA-6717-01 3 183706419 183706419 G A ABCC5 Silent p.L128L 0.16 TCGA-CA-6717-01 3 183756717 183756717 T C HTR3D Missense_Mutation p.F440S 0.21 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 3 183776269 183776269 C T HTR3C Missense_Mutation p.S205F 0.11 deleterious(0.01) benign(0.286) TCGA-CA-6717-01 3 183963388 183963388 G A ALG3 Silent p.F104F 0.14 TCGA-CA-6717-01 3 183976118 183976118 A C ECE2 Intron 0.10 TCGA-CA-6717-01 3 184033993 184033993 C A EIF4G1 Missense_Mutation p.S45Y 0.15 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 3 184298301 184298301 C T EPHB3 Missense_Mutation p.R762C 0.17 deleterious(0) probably_damaging(0.963) TCGA-CA-6717-01 3 184542412 184542412 G A VPS8 5'UTR 0.10 TCGA-CA-6717-01 3 184603905 184603905 T C VPS8 Missense_Mutation p.V581A 0.09 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 3 184612650 184612650 A T VPS8 Missense_Mutation p.K647N 0.13 tolerated(0.27) benign(0.004) TCGA-CA-6717-01 3 184631344 184631344 T C VPS8 Silent p.Y728Y 0.08 TCGA-CA-6717-01 3 184910704 184910704 G T EHHADH Missense_Mutation p.F494L 0.18 deleterious(0.04) probably_damaging(0.927) TCGA-CA-6717-01 3 185209449 185209449 T G TMEM41A Missense_Mutation p.K224T 0.13 deleterious(0.01) benign(0.109) TCGA-CA-6717-01 3 185252650 185252650 T G LIPH Missense_Mutation p.D107A 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 185783693 185783693 A G ETV5 Silent p.H273H 0.22 TCGA-CA-6717-01 3 185929668 185929668 C A DGKG Missense_Mutation p.K611N 0.20 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 3 185990095 185990095 T G DGKG Missense_Mutation p.R316S 0.09 tolerated(0.06) benign(0.027) TCGA-CA-6717-01 3 186281978 186281978 T C TBCCD1 Silent p.G47G 0.20 TCGA-CA-6717-01 3 186358420 186358420 G T FETUB Missense_Mutation p.K57N 0.19 deleterious(0) possibly_damaging(0.728) TCGA-CA-6717-01 3 186370175 186370175 G T FETUB Nonsense_Mutation p.G302* 0.15 TCGA-CA-6717-01 3 186389461 186389461 C A HRG Missense_Mutation p.F147L 0.10 deleterious(0.04) benign(0.153) TCGA-CA-6717-01 3 186459780 186459780 C T KNG1 Missense_Mutation p.T532I 0.26 deleterious(0.05) benign(0.018) TCGA-CA-6717-01 3 186460051 186460051 T G KNG1 Silent p.V622V 0.12 TCGA-CA-6717-01 3 186839008 186839008 A G RPL39L Silent p.I27I 0.26 TCGA-CA-6717-01 3 186917375 186917375 G A RTP1 Silent p.S103S 0.10 TCGA-CA-6717-01 3 187009517 187009517 C A MASP1 5'UTR 0.24 TCGA-CA-6717-01 3 187416386 187416386 C T RTP2 Missense_Mutation p.G193D 0.17 deleterious(0) benign(0.003) TCGA-CA-6717-01 3 191078875 191078875 A G CCDC50 Missense_Mutation p.E86G 0.10 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 3 191888386 191888386 G T FGF12 Silent p.I158I 0.11 TCGA-CA-6717-01 3 192973510 192973510 T C HRASLS Missense_Mutation p.F129S 0.09 tolerated(0.06) probably_damaging(0.993) TCGA-CA-6717-01 3 193016981 193016981 G T ATP13A5 Silent p.L929L 0.15 TCGA-CA-6717-01 3 193031887 193031887 C A ATP13A5 Nonsense_Mutation p.E752* 0.15 TCGA-CA-6717-01 3 193052728 193052728 A C ATP13A5 Silent p.V368V 0.14 TCGA-CA-6717-01 3 193081948 193081948 T C ATP13A5 Missense_Mutation p.N62S 0.09 tolerated(0.09) benign(0.011) TCGA-CA-6717-01 3 193166053 193166053 C A ATP13A4 Missense_Mutation p.E698D 0.23 deleterious(0.02) benign(0.059) TCGA-CA-6717-01 3 19322815 19322815 A C KCNH8 Missense_Mutation p.K146Q 0.12 tolerated(0.07) benign(0.314) TCGA-CA-6717-01 3 193332704 193332704 C A OPA1 Missense_Mutation p.F75L 0.12 tolerated(0.84) benign(0) TCGA-CA-6717-01 3 193353213 193353213 T G OPA1 Missense_Mutation p.Y266D 0.22 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 3 19389410 19389410 G A KCNH8 Missense_Mutation p.R255Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 3 195022852 195022852 C A ACAP2 Nonsense_Mutation p.E390* 0.18 TCGA-CA-6717-01 3 195063214 195063214 C T ACAP2 Missense_Mutation p.D172N 0.21 deleterious(0) probably_damaging(0.951) TCGA-CA-6717-01 3 195063291 195063291 C A ACAP2 Missense_Mutation p.R146I 0.21 deleterious(0) probably_damaging(0.948) TCGA-CA-6717-01 3 195101758 195101758 C A ACAP2 Nonsense_Mutation p.E89* 0.09 TCGA-CA-6717-01 3 195250487 195250487 T G PPP1R2 Intron 0.14 TCGA-CA-6717-01 3 195622160 195622160 C A TNK2 Missense_Mutation p.R43I 0.09 deleterious_low_confidence(0.01) benign(0.181) TCGA-CA-6717-01 3 195800922 195800922 C T TFRC Missense_Mutation p.E105K 0.17 tolerated(0.56) benign(0.048) TCGA-CA-6717-01 3 196022885 196022885 A C TCTEX1D2 Missense_Mutation p.F125V 0.29 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 3 196053831 196053831 G A TM4SF19 Nonsense_Mutation p.R92* 0.15 TCGA-CA-6717-01 3 196134257 196134257 A G UBXN7 Silent p.S27S 0.16 TCGA-CA-6717-01 3 196311020 196311020 G A FBXO45 Missense_Mutation p.R231Q 0.22 tolerated(0.15) probably_damaging(0.909) TCGA-CA-6717-01 3 196388302 196388302 T G NRROS Nonsense_Mutation p.Y596* 0.10 TCGA-CA-6717-01 3 196630449 196630449 G T SENP5 Nonsense_Mutation p.G618* 0.08 TCGA-CA-6717-01 3 196657877 196657877 T G SENP5 3'UTR 0.17 TCGA-CA-6717-01 3 196746466 196746466 G T MFI2 Intron 0.26 TCGA-CA-6717-01 3 196749913 196749913 G A MFI2 Missense_Mutation p.R187C 0.20 deleterious(0.01) possibly_damaging(0.849) TCGA-CA-6717-01 3 196771597 196771597 A T DLG1 Missense_Mutation p.I893N 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-CA-6717-01 3 197541793 197541793 C T LRCH3 Missense_Mutation p.R93C 0.19 deleterious(0) possibly_damaging(0.866) TCGA-CA-6717-01 3 197659124 197659124 A C IQCG Missense_Mutation p.S189A 0.12 tolerated(0.07) benign(0.146) TCGA-CA-6717-01 3 197751547 197751547 G A LMLN Missense_Mutation p.G552D 0.08 deleterious(0.02) possibly_damaging(0.885) TCGA-CA-6717-01 3 19921092 19921092 C A EFHB 3'UTR 0.33 TCGA-CA-6717-01 3 19926030 19926030 C T EFHB Missense_Mutation p.D671N 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-CA-6717-01 3 19930050 19930050 C A EFHB Missense_Mutation p.D607Y 0.15 tolerated(0.08) benign(0.213) TCGA-CA-6717-01 3 19930089 19930089 T C EFHB Missense_Mutation p.N594D 0.16 deleterious(0.04) benign(0.213) TCGA-CA-6717-01 3 20113859 20113859 A G KAT2B Missense_Mutation p.N113S 0.11 tolerated(0.24) benign(0.186) TCGA-CA-6717-01 3 20216354 20216354 G A SGOL1 Silent p.F223F 0.20 TCGA-CA-6717-01 3 20219767 20219767 A C SGOL1 Missense_Mutation p.L138V 0.17 tolerated(0.12) possibly_damaging(0.509) TCGA-CA-6717-01 3 21462878 21462878 G A ZNF385D Missense_Mutation p.P339L 0.21 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 3 21552505 21552505 G A ZNF385D Missense_Mutation p.A96V 0.18 deleterious(0.02) possibly_damaging(0.898) TCGA-CA-6717-01 3 21706418 21706418 T C ZNF385D Missense_Mutation p.D42G 0.08 tolerated(0.07) probably_damaging(0.956) TCGA-CA-6717-01 3 23959998 23959998 T G RPL15 Silent p.T80T 0.10 TCGA-CA-6717-01 3 23997527 23997527 G T NR1D2 Splice_Site p.X95_splice 0.18 TCGA-CA-6717-01 3 24006651 24006651 G T NR1D2 Nonsense_Mutation p.E444* 0.18 TCGA-CA-6717-01 3 25470196 25470196 T C RARB 5'UTR 0.12 TCGA-CA-6717-01 3 25611338 25611338 C T RARB Missense_Mutation p.L180F 0.30 deleterious(0) benign(0.102) TCGA-CA-6717-01 3 25611373 25611373 T G RARB Silent p.T191T 0.09 TCGA-CA-6717-01 3 25635154 25635154 A G RARB Missense_Mutation p.D316G 0.28 deleterious(0) possibly_damaging(0.88) TCGA-CA-6717-01 3 25805745 25805745 G A NGLY1 Missense_Mutation p.R102C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 26752035 26752035 T C LRRC3B 3'UTR 0.12 TCGA-CA-6717-01 3 27233599 27233599 C T NEK10 Missense_Mutation p.R809Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 3 27343319 27343319 T G NEK10 Missense_Mutation p.N346H 0.25 tolerated(0.16) benign(0.006) TCGA-CA-6717-01 3 27346426 27346426 C T NEK10 Silent p.E280E 0.10 TCGA-CA-6717-01 3 27451017 27451017 A C SLC4A7 Missense_Mutation p.F582V 0.23 deleterious(0) possibly_damaging(0.7) TCGA-CA-6717-01 3 27760233 27760233 T C EOMES Missense_Mutation p.N437S 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-CA-6717-01 3 28365880 28365880 A C AZI2 Missense_Mutation p.F278V 0.09 tolerated(0.5) benign(0.069) TCGA-CA-6717-01 3 28381910 28381910 T G AZI2 Silent p.R67R 0.24 TCGA-CA-6717-01 3 2944661 2944661 C A CNTN4 Silent p.I393I 0.20 TCGA-CA-6717-01 3 29476354 29476354 C T RBMS3 Nonsense_Mutation p.R66* 0.15 TCGA-CA-6717-01 3 2967448 2967448 T C CNTN4 Missense_Mutation p.L448S 0.12 deleterious(0) possibly_damaging(0.641) TCGA-CA-6717-01 3 29977646 29977646 A G RBMS3 Missense_Mutation p.T337A 0.15 tolerated(0.21) benign(0.004) TCGA-CA-6717-01 3 3076351 3076351 G A CNTN4 Missense_Mutation p.E607K 0.14 deleterious(0.03) benign(0.107) TCGA-CA-6717-01 3 3080689 3080689 T G CNTN4 Splice_Site p.X721_splice 0.19 TCGA-CA-6717-01 3 3144392 3144392 A C IL5RA Nonsense_Mutation p.Y65* 0.09 TCGA-CA-6717-01 3 31670855 31670855 G T STT3B Missense_Mutation p.L713F 0.13 tolerated(0.27) benign(0.33) TCGA-CA-6717-01 3 3179090 3179090 C T TRNT1 Missense_Mutation p.R99W 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 32030768 32030768 C A ZNF860 Missense_Mutation p.S66Y 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6717-01 3 32032069 32032069 C A ZNF860 Missense_Mutation p.H500N 0.19 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 3 32169689 32169689 A G GPD1L Missense_Mutation p.N57D 0.08 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 3 32586387 32586387 C A DYNC1LI1 Missense_Mutation p.M183I 0.13 tolerated(0.1) benign(0.004) TCGA-CA-6717-01 3 32746348 32746348 G T CNOT10 Missense_Mutation p.D115Y 0.16 deleterious(0.05) possibly_damaging(0.603) TCGA-CA-6717-01 3 32761661 32761661 G A CNOT10 Missense_Mutation p.R327Q 0.22 deleterious(0.01) benign(0.216) TCGA-CA-6717-01 3 32933286 32933286 C T TRIM71 Nonsense_Mutation p.R864* 0.13 TCGA-CA-6717-01 3 33194237 33194237 G T SUSD5 Silent p.V629V 0.18 TCGA-CA-6717-01 3 33255459 33255459 G A SUSD5 Missense_Mutation p.A84V 0.25 deleterious(0.01) possibly_damaging(0.821) TCGA-CA-6717-01 3 33431824 33431824 C A UBP1 Nonstop_Mutation p.*541Lext*4 0.14 TCGA-CA-6717-01 3 33644437 33644437 C A CLASP2 Intron 0.08 TCGA-CA-6717-01 3 33866830 33866830 G T PDCD6IP Missense_Mutation p.R205I 0.08 tolerated(0.29) benign(0.035) TCGA-CA-6717-01 3 33893997 33893997 A T PDCD6IP Missense_Mutation p.K558N 0.07 deleterious(0) possibly_damaging(0.79) TCGA-CA-6717-01 3 35748563 35748563 G T ARPP21 Nonsense_Mutation p.E262* 0.30 TCGA-CA-6717-01 3 35770951 35770951 G T ARPP21 Missense_Mutation p.S427I 0.27 deleterious(0.01) benign(0.088) TCGA-CA-6717-01 3 35785422 35785422 G A ARPP21 Missense_Mutation p.R667K 0.09 deleterious(0.05) benign(0.425) TCGA-CA-6717-01 3 36778932 36778932 G T DCLK3 Missense_Mutation p.Q407K 0.12 tolerated(0.45) benign(0.034) TCGA-CA-6717-01 3 36874764 36874764 T G TRANK1 Missense_Mutation p.N2060H 0.11 tolerated(0.05) probably_damaging(0.997) TCGA-CA-6717-01 3 36879877 36879877 C T TRANK1 Missense_Mutation p.E1791K 0.10 tolerated(0.2) benign(0.137) TCGA-CA-6717-01 3 36880125 36880125 T G TRANK1 Missense_Mutation p.K1744T 0.17 tolerated(0.07) benign(0.179) TCGA-CA-6717-01 3 36898464 36898464 T G TRANK1 Missense_Mutation p.K873Q 0.18 deleterious(0.01) possibly_damaging(0.695) TCGA-CA-6717-01 3 37095946 37095947 - T LRRFIP2 Frame_Shift_Ins p.V671Sfs*2 0.08 TCGA-CA-6717-01 3 37114288 37114288 T G LRRFIP2 Missense_Mutation p.K486T 0.19 deleterious(0.01) benign(0.038) TCGA-CA-6717-01 3 37356970 37356970 A G GOLGA4 Missense_Mutation p.K454E 0.08 possibly_damaging(0.516) TCGA-CA-6717-01 3 37366944 37366944 A C GOLGA4 Missense_Mutation p.K1211N 0.11 possibly_damaging(0.777) TCGA-CA-6717-01 3 37367548 37367548 G A GOLGA4 Missense_Mutation p.E1413K 0.18 possibly_damaging(0.889) TCGA-CA-6717-01 3 37368196 37368196 G T GOLGA4 Nonsense_Mutation p.E1629* 0.20 TCGA-CA-6717-01 3 37368947 37368947 A G GOLGA4 Missense_Mutation p.K1879R 0.09 benign(0.073) TCGA-CA-6717-01 3 37476341 37476341 A C C3orf35 Missense_Mutation p.K78T 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-CA-6717-01 3 37476342 37476342 A C C3orf35 Missense_Mutation p.K78N 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-CA-6717-01 3 38035185 38035185 C T VILL Missense_Mutation p.P8S 0.14 tolerated(0.07) benign(0.141) TCGA-CA-6717-01 3 38035207 38035207 A G VILL Missense_Mutation p.H15R 0.14 tolerated(0.68) benign(0.356) TCGA-CA-6717-01 3 38101283 38101283 C A DLEC1 Missense_Mutation p.H205N 0.20 tolerated(0.42) benign(0.003) TCGA-CA-6717-01 3 38134346 38134346 C T DLEC1 Silent p.C577C 0.16 TCGA-CA-6717-01 3 38167344 38167344 G A ACAA1 Silent p.F342F 0.09 TCGA-CA-6717-01 3 38316485 38316485 G T SLC22A13 Nonsense_Mutation p.E215* 0.12 TCGA-CA-6717-01 3 38350451 38350451 A C SLC22A14 Missense_Mutation p.E261A 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 38420788 38420788 T G XYLB Missense_Mutation p.F416V 0.16 deleterious(0.01) benign(0.259) TCGA-CA-6717-01 3 38616877 38616877 G A SCN5A Missense_Mutation p.R1193W 0.09 deleterious(0.01) possibly_damaging(0.814) TCGA-CA-6717-01 3 386387 386387 A G CHL1 Silent p.E281E 0.08 TCGA-CA-6717-01 3 38645348 38645348 G T SCN5A Missense_Mutation p.A582D 0.10 tolerated(0.64) benign(0.171) TCGA-CA-6717-01 3 38647483 38647483 G A SCN5A Missense_Mutation p.R433C 0.16 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 3 38651255 38651255 C T SCN5A Missense_Mutation p.E302K 0.26 tolerated(0.74) benign(0.002) TCGA-CA-6717-01 3 38739839 38739839 G A SCN10A Silent p.F1624F 0.13 TCGA-CA-6717-01 3 38743436 38743436 G A SCN10A Silent p.A1517A 0.12 TCGA-CA-6717-01 3 38770213 38770213 G T SCN10A Silent p.I820I 0.11 TCGA-CA-6717-01 3 38770333 38770333 G A SCN10A Silent p.I780I 0.13 TCGA-CA-6717-01 3 38797307 38797307 C T SCN10A Missense_Mutation p.R478H 0.16 tolerated(0.1) benign(0.001) TCGA-CA-6717-01 3 38830491 38830491 A G SCN10A Silent p.V142V 0.20 TCGA-CA-6717-01 3 38833647 38833647 G T SCN10A Missense_Mutation p.L95M 0.19 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 3 3886702 3886702 T G LRRN1 Missense_Mutation p.L126W 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 38924801 38924801 T G SCN11A Missense_Mutation p.T1048P 0.14 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 3 38945361 38945361 T G SCN11A Missense_Mutation p.N613H 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 38949502 38949502 A G SCN11A Silent p.L471L 0.11 TCGA-CA-6717-01 3 38991619 38991619 C A SCN11A Nonsense_Mutation p.E79* 0.14 TCGA-CA-6717-01 3 38991701 38991701 C T SCN11A Silent p.R51R 0.08 TCGA-CA-6717-01 3 39104659 39104659 T C WDR48 Missense_Mutation p.I56T 0.11 tolerated(0.25) benign(0.021) TCGA-CA-6717-01 3 39127100 39127100 T C WDR48 Silent p.H491H 0.15 TCGA-CA-6717-01 3 39133148 39133148 C A WDR48 Missense_Mutation p.F567L 0.10 deleterious(0.01) benign(0.168) TCGA-CA-6717-01 3 39174560 39174560 T G TTC21A Silent p.S867S 0.16 TCGA-CA-6717-01 3 39227883 39227883 T C XIRP1 Silent p.E1018E 0.10 TCGA-CA-6717-01 3 39306862 39306862 C A CX3CR1 3'UTR 0.22 TCGA-CA-6717-01 3 39307448 39307448 C A CX3CR1 Nonsense_Mutation p.E217* 0.19 TCGA-CA-6717-01 3 40085592 40085592 G A MYRIP Silent p.S54S 0.11 TCGA-CA-6717-01 3 40192648 40192648 G T MYRIP Nonsense_Mutation p.E148* 0.14 TCGA-CA-6717-01 3 40208406 40208406 C G MYRIP Missense_Mutation p.S207C 0.17 tolerated(0.13) benign(0.04) TCGA-CA-6717-01 3 40231541 40231541 C T MYRIP Missense_Mutation p.P418S 0.32 tolerated(1) benign(0.016) TCGA-CA-6717-01 3 40293391 40293391 T G MYRIP Silent p.S816S 0.11 TCGA-CA-6717-01 3 407720 407720 C T CHL1 Missense_Mutation p.S558L 0.22 tolerated(0.16) benign(0.011) TCGA-CA-6717-01 3 41266078 41266078 G A CTNNB1 Nonsense_Mutation p.W25* 0.16 TCGA-CA-6717-01 3 41268763 41268763 A C CTNNB1 Missense_Mutation p.E334A 0.19 deleterious(0.01) possibly_damaging(0.711) TCGA-CA-6717-01 3 41275030 41275030 A C CTNNB1 Missense_Mutation p.E399A 0.09 deleterious(0.01) benign(0.089) TCGA-CA-6717-01 3 41275649 41275649 G A CTNNB1 Missense_Mutation p.R515Q 0.08 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 3 41759228 41759228 C T ULK4 Missense_Mutation p.R816Q 0.15 tolerated(0.64) benign(0.004) TCGA-CA-6717-01 3 42243980 42243980 G A TRAK1 Missense_Mutation p.D494N 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 423918 423918 C T CHL1 Missense_Mutation p.R645W 0.16 deleterious(0) probably_damaging(0.944) TCGA-CA-6717-01 3 42576543 42576543 A G VIPR1 Missense_Mutation p.N363D 0.12 tolerated(0.65) benign(0.327) TCGA-CA-6717-01 3 42678527 42678527 A C NKTR Missense_Mutation p.K444T 0.13 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 3 42728193 42728193 C A KLHL40 Silent p.V361V 0.16 TCGA-CA-6717-01 3 42733479 42733479 G T KLHL40 Missense_Mutation p.K620N 0.19 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 42734166 42734166 A C HHATL 3'UTR 0.35 TCGA-CA-6717-01 3 42781243 42781243 G A CCDC13 Silent p.F349F 0.16 TCGA-CA-6717-01 3 42787454 42787454 C A CCDC13 Missense_Mutation p.W262C 0.15 deleterious(0) probably_damaging(0.957) TCGA-CA-6717-01 3 42798651 42798651 C T CCDC13 Missense_Mutation p.E93K 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 42906376 42906376 T G ACKR2 Missense_Mutation p.F128V 0.15 deleterious(0.01) benign(0.428) TCGA-CA-6717-01 3 42906468 42906468 G T ACKR2 Silent p.R158R 0.26 TCGA-CA-6717-01 3 42916693 42916693 A T CYP8B1 Missense_Mutation p.F206I 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 43074043 43074043 C T FAM198A Silent p.G96G 0.09 TCGA-CA-6717-01 3 43096952 43096952 T C FAM198A Missense_Mutation p.V481A 0.12 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 3 43602846 43602846 C A ANO10 Nonsense_Mutation p.E448* 0.17 TCGA-CA-6717-01 3 44285650 44285650 C T TOPAZ1 Missense_Mutation p.S551F 0.29 deleterious(0.05) benign(0.072) TCGA-CA-6717-01 3 44285740 44285740 C A TOPAZ1 Missense_Mutation p.T581N 0.08 deleterious(0.01) possibly_damaging(0.809) TCGA-CA-6717-01 3 44369790 44369790 G T TOPAZ1 Missense_Mutation p.R1575L 0.22 deleterious(0.01) probably_damaging(0.922) TCGA-CA-6717-01 3 44373349 44373349 C T TOPAZ1 Missense_Mutation p.A1642V 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 44438262 44438262 C A TCAIM Missense_Mutation p.S274Y 0.08 deleterious(0) possibly_damaging(0.904) TCGA-CA-6717-01 3 44488946 44488946 G A ZNF445 Silent p.G739G 0.20 TCGA-CA-6717-01 3 44598610 44598610 G A ZKSCAN7 Missense_Mutation p.R24H 0.21 tolerated(0.29) benign(0.001) TCGA-CA-6717-01 3 44611842 44611842 A G ZKSCAN7 Missense_Mutation p.N414D 0.25 tolerated(0.1) possibly_damaging(0.595) TCGA-CA-6717-01 3 44611978 44611978 G T ZKSCAN7 Missense_Mutation p.R459I 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 3 44636566 44636566 G T ZNF660 Missense_Mutation p.R294I 0.23 deleterious(0.04) possibly_damaging(0.856) TCGA-CA-6717-01 3 447362 447362 A C CHL1 Missense_Mutation p.S1215R 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 44842991 44842991 C A KIF15 Missense_Mutation p.F424L 0.09 tolerated(0.62) benign(0.006) TCGA-CA-6717-01 3 44853765 44853765 C T KIF15 Missense_Mutation p.S754F 0.09 deleterious(0.04) possibly_damaging(0.748) TCGA-CA-6717-01 3 44948493 44948493 C A TGM4 Silent p.I376I 0.21 TCGA-CA-6717-01 3 44948517 44948517 C T TGM4 Silent p.F384F 0.18 TCGA-CA-6717-01 3 44952549 44952549 T G TGM4 Missense_Mutation p.I569S 0.16 deleterious(0) benign(0.325) TCGA-CA-6717-01 3 44952557 44952557 T G TGM4 Missense_Mutation p.S572A 0.15 deleterious(0.02) benign(0.037) TCGA-CA-6717-01 3 45067946 45067946 T G CLEC3B Missense_Mutation p.I31S 0.14 tolerated(0.74) benign(0) TCGA-CA-6717-01 3 45748285 45748285 A C SACM1L Silent p.I73I 0.08 TCGA-CA-6717-01 3 45875786 45875786 A C LZTFL1 Missense_Mutation p.L110V 0.19 deleterious(0.01) possibly_damaging(0.775) TCGA-CA-6717-01 3 46010071 46010071 C T FYCO1 Missense_Mutation p.R252H 0.22 tolerated(0.07) benign(0.033) TCGA-CA-6717-01 3 46245448 46245448 G A CCR1 Silent p.S119S 0.38 TCGA-CA-6717-01 3 46306774 46306774 C A CCR3 Missense_Mutation p.S63Y 0.08 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 3 46399210 46399210 C T CCR2 Silent p.V64V 0.26 TCGA-CA-6717-01 3 46399384 46399384 C T CCR2 Silent p.I122I 0.10 TCGA-CA-6717-01 3 46399939 46399939 C T CCR2 Silent p.F307F 0.14 TCGA-CA-6717-01 3 46401329 46401329 T G CCR2 Missense_Mutation p.L368R 0.18 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-CA-6717-01 3 46414742 46414742 T G CCR5 Missense_Mutation p.F117V 0.26 deleterious(0) possibly_damaging(0.895) TCGA-CA-6717-01 3 46450597 46450597 G A CCRL2 Missense_Mutation p.E355K 0.25 tolerated(0.46) benign(0.018) TCGA-CA-6717-01 3 46479468 46479468 G A LTF Silent p.V687V 0.18 TCGA-CA-6717-01 3 46482936 46482936 T C LTF Missense_Mutation p.K565R 0.21 tolerated(0.07) probably_damaging(0.916) TCGA-CA-6717-01 3 47030775 47030775 G A NBEAL2 Missense_Mutation p.G126D 0.20 tolerated(0.6) benign(0.002) TCGA-CA-6717-01 3 4703877 4703877 T C ITPR1 Missense_Mutation p.S440P 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-CA-6717-01 3 47061293 47061293 G T SETD2 Missense_Mutation p.S2463Y 0.10 deleterious(0) probably_damaging(0.929) TCGA-CA-6717-01 3 4715994 4715994 C A ITPR1 Missense_Mutation p.F840L 0.12 tolerated(0.06) probably_damaging(0.983) TCGA-CA-6717-01 3 47161853 47161853 T G SETD2 Missense_Mutation p.K1425Q 0.10 deleterious(0) possibly_damaging(0.907) TCGA-CA-6717-01 3 47161912 47161912 T G SETD2 Missense_Mutation p.K1405T 0.12 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 3 47162555 47162555 T G SETD2 Missense_Mutation p.K1191Q 0.12 tolerated(0.38) benign(0.07) TCGA-CA-6717-01 3 47163192 47163192 T G SETD2 Missense_Mutation p.E978D 0.12 tolerated_low_confidence(0.42) possibly_damaging(0.526) TCGA-CA-6717-01 3 4718321 4718321 C A ITPR1 Missense_Mutation p.H920N 0.16 tolerated(0.26) probably_damaging(0.989) TCGA-CA-6717-01 3 47318816 47318816 C T KIF9 Missense_Mutation p.D17N 0.22 tolerated(0.23) benign(0.225) TCGA-CA-6717-01 3 4732914 4732914 C T ITPR1 Silent p.F1290F 0.16 TCGA-CA-6717-01 3 4732993 4732993 T G ITPR1 Missense_Mutation p.F1317V 0.08 tolerated(0.13) benign(0.328) TCGA-CA-6717-01 3 4735393 4735393 C T ITPR1 Missense_Mutation p.R1402C 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 3 4738913 4738913 A G ITPR1 Missense_Mutation p.H1440R 0.25 deleterious(0) benign(0.39) TCGA-CA-6717-01 3 47703942 47703942 A C SMARCC1 Silent p.P680P 0.09 TCGA-CA-6717-01 3 4776946 4776946 G A ITPR1 Missense_Mutation p.D1803N 0.23 tolerated(0.09) probably_damaging(0.995) TCGA-CA-6717-01 3 47868853 47868853 A C DHX30 Missense_Mutation p.L47F 0.08 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 3 47868873 47868873 A G DHX30 Missense_Mutation p.K54R 0.08 deleterious(0) probably_damaging(0.96) TCGA-CA-6717-01 3 47890695 47890695 G T DHX30 Missense_Mutation p.Q981H 0.10 deleterious(0) possibly_damaging(0.507) TCGA-CA-6717-01 3 47950537 47950537 T C MAP4 Intron 0.08 TCGA-CA-6717-01 3 48222256 48222256 A G CDC25A Silent p.G168G 0.19 TCGA-CA-6717-01 3 48226174 48226174 C A CDC25A Missense_Mutation p.D87Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 48414291 48414291 C T FBXW12 Nonsense_Mutation p.R12* 0.23 TCGA-CA-6717-01 3 48423200 48423200 C T FBXW12 Silent p.I332I 0.10 TCGA-CA-6717-01 3 48454501 48454501 T C PLXNB1 Missense_Mutation p.D1538G 0.17 deleterious(0) probably_damaging(0.937) TCGA-CA-6717-01 3 48465696 48465696 C A PLXNB1 Missense_Mutation p.V109L 0.14 deleterious(0.02) possibly_damaging(0.779) TCGA-CA-6717-01 3 48613110 48613110 C T COL7A1 Silent p.R1976R 0.09 TCGA-CA-6717-01 3 48626218 48626218 C T COL7A1 Missense_Mutation p.G815D 0.21 unknown(0) TCGA-CA-6717-01 3 48628154 48628154 G A COL7A1 Nonsense_Mutation p.R578* 0.15 TCGA-CA-6717-01 3 48716596 48716596 C T NCKIPSD Missense_Mutation p.A531T 0.22 deleterious(0.05) benign(0.007) TCGA-CA-6717-01 3 49136117 49136117 C A QARS Missense_Mutation p.E624D 0.21 tolerated(0.7) benign(0.075) TCGA-CA-6717-01 3 49136423 49136423 C A QARS Splice_Site p.X587_splice 0.29 TCGA-CA-6717-01 3 49146459 49146459 C T USP19 Missense_Mutation p.V1398M 0.29 tolerated_low_confidence(0.95) benign(0.005) TCGA-CA-6717-01 3 49151693 49151693 G T USP19 Missense_Mutation p.L771I 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-CA-6717-01 3 49161297 49161297 T C LAMB2 Missense_Mutation p.T1221A 0.24 tolerated(0.09) benign(0.201) TCGA-CA-6717-01 3 49163465 49163465 G T LAMB2 Missense_Mutation p.S760Y 0.33 deleterious(0) benign(0.065) TCGA-CA-6717-01 3 49166553 49166553 C T LAMB2 Missense_Mutation p.R544H 0.24 deleterious(0.02) benign(0.117) TCGA-CA-6717-01 3 49201547 49201547 A G CCDC71 Missense_Mutation p.L32P 0.08 tolerated(0.11) probably_damaging(0.988) TCGA-CA-6717-01 3 49212212 49212212 A C KLHDC8B Missense_Mutation p.E193D 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 3 49249227 49249227 T C CCDC36 Missense_Mutation p.V5A 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 3 49691437 49691437 C A BSN Missense_Mutation p.S1483Y 0.13 unknown(0) TCGA-CA-6717-01 3 49699274 49699274 G T BSN Missense_Mutation p.E3332D 0.22 unknown(0) TCGA-CA-6717-01 3 49714127 49714127 A G APEH Missense_Mutation p.N277S 0.09 deleterious(0.01) probably_damaging(0.927) TCGA-CA-6717-01 3 49725081 49725081 C T MST1 Missense_Mutation p.S88N 0.20 tolerated(0.33) possibly_damaging(0.572) TCGA-CA-6717-01 3 49735933 49735933 A G RNF123 Missense_Mutation p.N182D 0.13 deleterious(0.02) probably_damaging(0.987) TCGA-CA-6717-01 3 49753874 49753874 T C RNF123 Missense_Mutation p.I1155T 0.11 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 3 49756397 49756397 C T AMIGO3 Missense_Mutation p.E168K 0.24 tolerated(0.51) benign(0.007) TCGA-CA-6717-01 3 49758682 49758682 T C RNF123 Missense_Mutation p.S1297P 0.13 tolerated(0.13) benign(0.131) TCGA-CA-6717-01 3 49845866 49845866 C T UBA7 Missense_Mutation p.E795K 0.28 tolerated(0.37) benign(0.009) TCGA-CA-6717-01 3 49867455 49867455 T C TRAIP Missense_Mutation p.K362E 0.12 tolerated(0.27) benign(0.013) TCGA-CA-6717-01 3 49867457 49867457 C A TRAIP Missense_Mutation p.R361M 0.12 tolerated(0.09) benign(0.002) TCGA-CA-6717-01 3 49885615 49885615 C A TRAIP Missense_Mutation p.E39D 0.11 tolerated(0.4) benign(0.03) TCGA-CA-6717-01 3 49924732 49924732 G T MST1R 3'UTR 0.19 TCGA-CA-6717-01 3 50141719 50141719 C T RBM5 Silent p.F202F 0.25 TCGA-CA-6717-01 3 50253248 50253248 A C SLC38A3 RNA 0.13 TCGA-CA-6717-01 3 50324595 50324595 C T LSMEM2 Missense_Mutation p.R153W 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 50390690 50390690 G A CYB561D2 Missense_Mutation p.E62K 0.38 deleterious(0) possibly_damaging(0.857) TCGA-CA-6717-01 3 50404054 50404054 G A CACNA2D2 Silent p.C871C 0.20 TCGA-CA-6717-01 3 50413598 50413598 A G CACNA2D2 Missense_Mutation p.F550L 0.16 deleterious(0) possibly_damaging(0.742) TCGA-CA-6717-01 3 50425011 50425011 A G CACNA2D2 Silent p.A166A 0.20 TCGA-CA-6717-01 3 50614572 50614572 C T HEMK1 Silent p.C168C 0.24 TCGA-CA-6717-01 3 50879130 50879130 A C DOCK3 Missense_Mutation p.K49T 0.19 deleterious(0.01) possibly_damaging(0.724) TCGA-CA-6717-01 3 50971475 50971475 A G DOCK3 Silent p.Q94Q 0.19 TCGA-CA-6717-01 3 51246258 51246258 C T DOCK3 Missense_Mutation p.S364F 0.26 tolerated(0.09) possibly_damaging(0.828) TCGA-CA-6717-01 3 51265438 51265438 C A DOCK3 Silent p.L522L 0.11 TCGA-CA-6717-01 3 51431822 51431822 T G RBM15B 3'UTR 0.08 TCGA-CA-6717-01 3 51434654 51434654 C A RBM15B 3'UTR 0.12 TCGA-CA-6717-01 3 51455607 51455607 A G VPRBP Missense_Mutation p.S732P 0.21 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 3 51664769 51664769 A G RAD54L2 Missense_Mutation p.D216G 0.12 tolerated(0.11) benign(0.003) TCGA-CA-6717-01 3 51675883 51675883 C T RAD54L2 Missense_Mutation p.R784W 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 51677957 51677957 A G RAD54L2 Missense_Mutation p.N806S 0.11 deleterious(0.01) benign(0.364) TCGA-CA-6717-01 3 52019879 52019879 T G ACY1 Missense_Mutation p.S92R 0.15 deleterious(0.02) benign(0.108) TCGA-CA-6717-01 3 5214361 5214361 A G ARL8B Missense_Mutation p.K103R 0.08 tolerated(0.09) benign(0.244) TCGA-CA-6717-01 3 52238774 52238774 A G ALAS1 Missense_Mutation p.T215A 0.29 deleterious(0) benign(0.209) TCGA-CA-6717-01 3 52291342 52291342 T G WDR82 3'UTR 0.33 TCGA-CA-6717-01 3 52356792 52356792 G A DNAH1 Splice_Site p.X111_splice 0.16 TCGA-CA-6717-01 3 52396496 52396496 G A DNAH1 Silent p.T1691T 0.17 TCGA-CA-6717-01 3 52417882 52417882 C T DNAH1 Silent p.I2719I 0.13 TCGA-CA-6717-01 3 52430812 52430812 A C DNAH1 Missense_Mutation p.K3870T 0.16 probably_damaging(0.955) TCGA-CA-6717-01 3 52442525 52442525 C A BAP1 Missense_Mutation p.D74Y 0.16 deleterious(0) probably_damaging(0.939) TCGA-CA-6717-01 3 52453923 52453923 A C PHF7 Missense_Mutation p.K87N 0.27 deleterious(0.03) possibly_damaging(0.734) TCGA-CA-6717-01 3 52454429 52454429 T C PHF7 Missense_Mutation p.S131P 0.12 tolerated(0.21) probably_damaging(0.999) TCGA-CA-6717-01 3 52457124 52457124 T G PHF7 Missense_Mutation p.S313A 0.24 tolerated(0.2) benign(0.075) TCGA-CA-6717-01 3 5246920 5246920 G T EDEM1 Missense_Mutation p.R404I 0.24 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 3 52469619 52469619 C A SEMA3G Nonstop_Mutation p.*783Yext*51 0.23 TCGA-CA-6717-01 3 5252959 5252959 G A EDEM1 Intron 0.16 TCGA-CA-6717-01 3 52547907 52547908 - C STAB1 Frame_Shift_Ins p.R1122Pfs*37 0.32 TCGA-CA-6717-01 3 52551336 52551336 A G STAB1 Missense_Mutation p.E1497G 0.11 deleterious(0) probably_damaging(0.95) TCGA-CA-6717-01 3 52621458 52621458 A C PBRM1 Intron 0.13 TCGA-CA-6717-01 3 52637690 52637690 G A PBRM1 Missense_Mutation p.R876C 0.12 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 3 52651334 52651334 C A PBRM1 Nonsense_Mutation p.E588* 0.14 TCGA-CA-6717-01 3 52723094 52723094 T G GNL3 Missense_Mutation p.I138S 0.24 deleterious(0) probably_damaging(0.939) TCGA-CA-6717-01 3 52726948 52726948 C T GNL3 Silent p.I310I 0.10 TCGA-CA-6717-01 3 52728377 52728377 G T GNL3 3'UTR 0.23 TCGA-CA-6717-01 3 52941613 52941613 G A SFMBT1 Silent p.R681R 0.22 TCGA-CA-6717-01 3 52941659 52941659 T G SFMBT1 Missense_Mutation p.K666T 0.08 deleterious(0) possibly_damaging(0.494) TCGA-CA-6717-01 3 53259708 53259708 C A TKT 3'UTR 0.09 TCGA-CA-6717-01 3 53757510 53757510 A C CACNA1D Silent p.V592V 0.18 TCGA-CA-6717-01 3 53785819 53785819 G T CACNA1D Missense_Mutation p.R1207I 0.11 tolerated(0.07) probably_damaging(0.998) TCGA-CA-6717-01 3 53804016 53804016 A C CACNA1D Missense_Mutation p.N1316T 0.25 tolerated(0.7) benign(0.001) TCGA-CA-6717-01 3 53804546 53804546 G A CACNA1D Silent p.R1357R 0.11 TCGA-CA-6717-01 3 53808666 53808666 A C CACNA1D Missense_Mutation p.N1408T 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 3 54914835 54914835 G A CACNA2D3 Silent p.A619A 0.19 TCGA-CA-6717-01 3 55021772 55021772 C A CACNA2D3 Silent p.S894S 0.13 TCGA-CA-6717-01 3 55504304 55504304 G A WNT5A Missense_Mutation p.T320M 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 55922419 55922419 C A ERC2 Missense_Mutation p.M854I 0.14 deleterious(0) probably_damaging(0.958) TCGA-CA-6717-01 3 55922481 55922481 C A ERC2 Nonsense_Mutation p.E834* 0.18 TCGA-CA-6717-01 3 56173628 56173628 C G ERC2 Missense_Mutation p.S461T 0.10 tolerated(1) benign(0.003) TCGA-CA-6717-01 3 56469040 56469040 C A ERC2 5'UTR 0.25 TCGA-CA-6717-01 3 56649276 56649276 T C CCDC66 Missense_Mutation p.S563P 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 56661703 56661703 C A FAM208A Missense_Mutation p.D1313Y 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 56807768 56807768 G A ARHGEF3 Missense_Mutation p.T90M 0.10 tolerated(0.05) benign(0.157) TCGA-CA-6717-01 3 56992863 56992863 C T ARHGEF3 Nonsense_Mutation p.W39* 0.16 TCGA-CA-6717-01 3 57232172 57232172 T G HESX1 3'UTR 0.11 TCGA-CA-6717-01 3 57293075 57293075 G T APPL1 Nonsense_Mutation p.E484* 0.23 TCGA-CA-6717-01 3 57293900 57293900 T C APPL1 Missense_Mutation p.V504A 0.10 deleterious(0.04) possibly_damaging(0.663) TCGA-CA-6717-01 3 57327990 57327990 G T ASB14 5'Flank 0.20 TCGA-CA-6717-01 3 57329622 57329622 T C ASB14 5'Flank 0.18 TCGA-CA-6717-01 3 57343188 57343188 C A DNAH12 Missense_Mutation p.R446I 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 57348623 57348624 - A DNAH12 Frame_Shift_Ins p.H2653Sfs*22 0.20 TCGA-CA-6717-01 3 57357041 57357041 A C DNAH12 Silent p.S224S 0.26 TCGA-CA-6717-01 3 57357160 57357160 A C DNAH12 Missense_Mutation p.C185G 0.22 deleterious(0) benign(0.283) TCGA-CA-6717-01 3 57431099 57431099 T C DNAH12 Missense_Mutation p.I1386M 0.12 deleterious(0) possibly_damaging(0.639) TCGA-CA-6717-01 3 57432329 57432329 C T DNAH12 Missense_Mutation p.A1269T 0.10 deleterious(0) possibly_damaging(0.787) TCGA-CA-6717-01 3 57438688 57438688 T G DNAH12 Missense_Mutation p.E1200A 0.17 deleterious(0.05) benign(0.292) TCGA-CA-6717-01 3 57443685 57443685 C A DNAH12 Missense_Mutation p.E1010D 0.26 deleterious(0) possibly_damaging(0.523) TCGA-CA-6717-01 3 57445491 57445491 C T DNAH12 Missense_Mutation p.R897Q 0.23 tolerated(0.2) possibly_damaging(0.553) TCGA-CA-6717-01 3 57475246 57475246 C A Y_RNA 5'Flank 0.19 TCGA-CA-6717-01 3 57488128 57488128 A G DNAH12 Silent p.L389L 0.08 TCGA-CA-6717-01 3 57496525 57496525 C A DNAH12 Missense_Mutation p.R154I 0.21 deleterious(0) benign(0.199) TCGA-CA-6717-01 3 57542360 57542360 G A PDE12 Missense_Mutation p.G85D 0.10 tolerated(0.13) benign(0.391) TCGA-CA-6717-01 3 57646548 57646548 C A DENND6A Missense_Mutation p.R213L 0.08 deleterious(0.03) benign(0.082) TCGA-CA-6717-01 3 58088011 58088011 A C FLNB Missense_Mutation p.K476T 0.10 tolerated(0.26) benign(0.237) TCGA-CA-6717-01 3 58179120 58179120 A G DNASE1L3 Missense_Mutation p.S251P 0.25 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 58193995 58193995 G T DNASE1L3 Silent p.I60I 0.15 TCGA-CA-6717-01 3 58368278 58368278 T G PXK Missense_Mutation p.L80W 0.17 deleterious(0) possibly_damaging(0.758) TCGA-CA-6717-01 3 58395271 58395271 C T PXK Nonsense_Mutation p.R441* 0.15 TCGA-CA-6717-01 3 58415440 58415440 A G PDHB Missense_Mutation p.C263R 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 3 58856028 58856028 G T C3orf67 Missense_Mutation p.F116L 0.20 tolerated(0.84) benign(0.045) TCGA-CA-6717-01 3 58870302 58870302 G A C3orf67 Silent p.F103F 0.17 TCGA-CA-6717-01 3 62357280 62357280 G A FEZF2 Silent p.F305F 0.10 TCGA-CA-6717-01 3 62502304 62502304 A G CADPS Missense_Mutation p.F803S 0.07 deleterious(0) benign(0.307) TCGA-CA-6717-01 3 62570893 62570893 C T CADPS Missense_Mutation p.R515Q 0.10 deleterious(0) benign(0.238) TCGA-CA-6717-01 3 63429113 63429113 C A SYNPR Intron 0.20 TCGA-CA-6717-01 3 63649694 63649694 T G SNTN Missense_Mutation p.F123V 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 63985146 63985146 G A ATXN7 Missense_Mutation p.A917T 0.31 tolerated_low_confidence(0.18) benign(0.005) TCGA-CA-6717-01 3 64148792 64148792 T G PRICKLE2 Missense_Mutation p.Y53S 0.15 deleterious(0) probably_damaging(0.949) TCGA-CA-6717-01 3 64518872 64518872 A C ADAMTS9 Missense_Mutation p.N1896K 0.17 deleterious(0.02) possibly_damaging(0.792) TCGA-CA-6717-01 3 64606845 64606845 G T ADAMTS9 Silent p.R920R 0.11 TCGA-CA-6717-01 3 64673240 64673240 C A ADAMTS9 Missense_Mutation p.D32Y 0.19 tolerated(0.35) benign(0.11) TCGA-CA-6717-01 3 65387118 65387118 T G MAGI1 Missense_Mutation p.K732T 0.17 deleterious(0.01) possibly_damaging(0.794) TCGA-CA-6717-01 3 66293731 66293731 G T SLC25A26 Nonsense_Mutation p.E99* 0.14 TCGA-CA-6717-01 3 67054513 67054513 A C KBTBD8 Silent p.P374P 0.23 TCGA-CA-6717-01 3 68055677 68055677 G A FAM19A1 Intron 0.13 TCGA-CA-6717-01 3 68802140 68802140 C A FAM19A4 Nonsense_Mutation p.E54* 0.11 TCGA-CA-6717-01 3 69050765 69050765 C A EOGT Missense_Mutation p.D241Y 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 69087793 69087793 T G TMF1 Missense_Mutation p.K691N 0.09 tolerated(0.21) benign(0.007) TCGA-CA-6717-01 3 69096775 69096775 T G TMF1 Missense_Mutation p.N361H 0.14 tolerated_low_confidence(0.14) benign(0.005) TCGA-CA-6717-01 3 69113221 69113221 C T UBA3 Missense_Mutation p.R157Q 0.08 tolerated(0.23) benign(0.441) TCGA-CA-6717-01 3 69153771 69153771 G A ARL6IP5 Missense_Mutation p.S184N 0.12 tolerated_low_confidence(0.06) benign(0.001) TCGA-CA-6717-01 3 69168695 69168695 A C LMOD3 Missense_Mutation p.L271V 0.16 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 69169145 69169145 C A LMOD3 Nonsense_Mutation p.E121* 0.19 TCGA-CA-6717-01 3 69171541 69171541 T G LMOD3 5'UTR 0.11 TCGA-CA-6717-01 3 70014076 70014076 C T MITF Missense_Mutation p.R414W 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 3 70014401 70014401 G A MITF 3'UTR 0.30 TCGA-CA-6717-01 3 72428423 72428423 T G RYBP Missense_Mutation p.K194T 0.08 deleterious(0) benign(0.261) TCGA-CA-6717-01 3 73004467 73004467 G T GXYLT2 Missense_Mutation p.M273I 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-CA-6717-01 3 73111347 73111347 G T EBLN2 Nonsense_Mutation p.E39* 0.25 TCGA-CA-6717-01 3 73450149 73450149 G A PDZRN3 Missense_Mutation p.A393V 0.13 tolerated(0.4) benign(0) TCGA-CA-6717-01 3 74411065 74411065 T C CNTN3 Missense_Mutation p.D447G 0.09 tolerated(0.58) benign(0) TCGA-CA-6717-01 3 74420514 74420514 G A CNTN3 Missense_Mutation p.S164L 0.22 tolerated(0.75) possibly_damaging(0.594) TCGA-CA-6717-01 3 7620629 7620629 G A GRM7 Missense_Mutation p.R679Q 0.20 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 3 77671459 77671459 G T ROBO2 Missense_Mutation p.L1228F 0.19 tolerated(0.1) possibly_damaging(0.587) TCGA-CA-6717-01 3 78700892 78700892 A G ROBO1 Silent p.G934G 0.12 TCGA-CA-6717-01 3 78710203 78710203 T A ROBO1 Missense_Mutation p.K766M 0.17 tolerated(0.14) possibly_damaging(0.594) TCGA-CA-6717-01 3 85775646 85775646 C A CADM2 Missense_Mutation p.F5L 0.19 tolerated(0.49) benign(0.01) TCGA-CA-6717-01 3 86114859 86114859 C T CADM2 Nonsense_Mutation p.R392* 0.07 TCGA-CA-6717-01 3 88042191 88042191 C T HTR1F 3'UTR 0.24 TCGA-CA-6717-01 3 88202425 88202425 T G C3orf38 Missense_Mutation p.L60R 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 89156894 89156894 G A EPHA3 5'UTR 0.17 TCGA-CA-6717-01 3 89390943 89390943 A C EPHA3 Missense_Mutation p.N337H 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 3 89391016 89391016 T C EPHA3 Missense_Mutation p.I361T 0.10 deleterious(0) benign(0.272) TCGA-CA-6717-01 3 9089141 9089141 T C SRGAP3 Missense_Mutation p.N448D 0.14 tolerated(0.28) probably_damaging(0.987) TCGA-CA-6717-01 3 93595950 93595950 A C PROS1 Missense_Mutation p.F577C 0.19 tolerated(0.06) benign(0.033) TCGA-CA-6717-01 3 93722734 93722734 C T ARL13B Missense_Mutation p.S121L 0.09 deleterious(0) probably_damaging(0.961) TCGA-CA-6717-01 3 93733685 93733685 A C STX19 Missense_Mutation p.H143Q 0.20 tolerated(0.64) benign(0.003) TCGA-CA-6717-01 3 93755565 93755565 G T ARL13B Missense_Mutation p.R219I 0.08 deleterious(0) probably_damaging(0.961) TCGA-CA-6717-01 3 93780142 93780142 T C DHFRL1 Missense_Mutation p.I72V 0.09 tolerated(0.12) benign(0.365) TCGA-CA-6717-01 3 9412954 9412954 G T THUMPD3 Missense_Mutation p.D181Y 0.09 deleterious(0) possibly_damaging(0.839) TCGA-CA-6717-01 3 9482139 9482139 G T SETD5 Splice_Site p.X190_splice 0.12 TCGA-CA-6717-01 3 9483411 9483411 G T SETD5 Silent p.G315G 0.09 TCGA-CA-6717-01 3 9495543 9495543 G T SETD5 Missense_Mutation p.D823Y 0.14 deleterious(0.01) probably_damaging(0.944) TCGA-CA-6717-01 3 96945156 96945156 C A EPHA6 Missense_Mutation p.S388Y 0.20 deleterious(0.03) possibly_damaging(0.735) TCGA-CA-6717-01 3 9729555 9729555 C A MTMR14 Missense_Mutation p.F405L 0.11 deleterious(0) probably_damaging(0.914) TCGA-CA-6717-01 3 97454942 97454942 C T EPHA6 Silent p.T1036T 0.11 TCGA-CA-6717-01 3 97506908 97506908 A C ARL6 Missense_Mutation p.K142Q 0.17 tolerated(0.13) benign(0.064) TCGA-CA-6717-01 3 97596344 97596344 G T CRYBG3 Missense_Mutation p.E154D 0.14 tolerated(1) benign(0.061) TCGA-CA-6717-01 3 97611821 97611821 C T CRYBG3 Missense_Mutation p.R572C 0.18 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 3 97614827 97614827 T G CRYBG3 Missense_Mutation p.H585Q 0.12 tolerated(0.37) benign(0.016) TCGA-CA-6717-01 3 97631114 97631114 G A CRYBG3 Missense_Mutation p.R755Q 0.10 tolerated(0.07) possibly_damaging(0.876) TCGA-CA-6717-01 3 97705562 97705562 A C GABRR3 Missense_Mutation p.L457V 0.09 tolerated(0.2) benign(0.003) TCGA-CA-6717-01 3 97705670 97705670 G A GABRR3 Missense_Mutation p.R421W 0.17 tolerated(0.13) benign(0.409) TCGA-CA-6717-01 3 97705699 97705699 G A GABRR3 Missense_Mutation p.S411L 0.25 tolerated(0.35) benign(0.001) TCGA-CA-6717-01 3 9784808 9784808 C T BRPF1 Missense_Mutation p.R728C 0.10 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 97868407 97868407 T C OR5H14 Missense_Mutation p.Y60H 0.06 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 9788942 9788942 G A BRPF1 Missense_Mutation p.R1191H 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 3 97983643 97983643 C T OR5H6 Missense_Mutation p.A172V 0.07 tolerated(0.05) benign(0.097) TCGA-CA-6717-01 3 98002015 98002015 G T OR5H2 Missense_Mutation p.R95M 0.09 deleterious(0.02) benign(0.004) TCGA-CA-6717-01 3 98072771 98072771 C T OR5K4 Missense_Mutation p.T25M 0.22 tolerated(0.05) benign(0.011) TCGA-CA-6717-01 3 98072966 98072966 G T OR5K4 Missense_Mutation p.R90I 0.14 deleterious(0) possibly_damaging(0.563) TCGA-CA-6717-01 3 98073124 98073124 C T OR5K4 Missense_Mutation p.R143W 0.14 tolerated(0.11) possibly_damaging(0.67) TCGA-CA-6717-01 3 98073277 98073277 A G OR5K4 Missense_Mutation p.I194V 0.09 tolerated(0.25) benign(0.03) TCGA-CA-6717-01 3 98109706 98109706 T C OR5K3 Missense_Mutation p.L66P 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 3 98110341 98110341 T A OR5K3 Missense_Mutation p.L278I 0.17 tolerated(1) benign(0.003) TCGA-CA-6717-01 3 98188513 98188513 C A OR5K1 Missense_Mutation p.F31L 0.14 deleterious(0.01) probably_damaging(0.98) TCGA-CA-6717-01 3 98216720 98216720 C T OR5K2 Silent p.L66L 0.07 TCGA-CA-6717-01 3 98216736 98216736 C T OR5K2 Missense_Mutation p.S71F 0.07 deleterious(0.04) benign(0.053) TCGA-CA-6717-01 3 98217148 98217148 C A OR5K2 Silent p.V208V 0.10 TCGA-CA-6717-01 3 98240060 98240060 C T CLDND1 Missense_Mutation p.R93Q 0.23 tolerated(0.26) benign(0.074) TCGA-CA-6717-01 3 98250992 98250992 T G GPR15 Missense_Mutation p.F39V 0.13 tolerated(0.16) benign(0.156) TCGA-CA-6717-01 3 98251609 98251609 T A GPR15 Missense_Mutation p.F244L 0.21 tolerated(0.55) benign(0.014) TCGA-CA-6717-01 3 98503837 98503837 G T ST3GAL6 Missense_Mutation p.K128N 0.10 deleterious(0) possibly_damaging(0.88) TCGA-CA-6717-01 3 98520490 98520490 C A DCBLD2 Missense_Mutation p.K558N 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-CA-6717-01 3 99514815 99514815 C T COL8A1 Silent p.D690D 0.14 TCGA-CA-6717-01 3 99643245 99643245 T G FILIP1L Missense_Mutation p.K145T 0.22 deleterious(0) possibly_damaging(0.857) TCGA-CA-6717-01 3 99881240 99881240 C T CMSS1 Missense_Mutation p.R107C 0.24 deleterious(0.03) benign(0.224) TCGA-CA-6717-01 3 9989467 9989467 G A PRRT3 Missense_Mutation p.R464W 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 3 9990858 9990858 G A PRRT3 Silent p.D314D 0.29 TCGA-CA-6717-01 4 100002554 100002554 A C ADH5 Missense_Mutation p.F102L 0.20 deleterious(0.03) benign(0.091) TCGA-CA-6717-01 4 100228884 100228884 T G ADH1B 3'UTR 0.19 TCGA-CA-6717-01 4 100239294 100239294 G C ADH1B Silent p.G56G 0.12 TCGA-CA-6717-01 4 100264044 100264044 C A ADH1C Missense_Mutation p.D246Y 0.09 probably_damaging(1) TCGA-CA-6717-01 4 100530061 100530061 G T MTTP Nonsense_Mutation p.E566* 0.12 TCGA-CA-6717-01 4 100534165 100534165 C A MTTP Silent p.I695I 0.10 TCGA-CA-6717-01 4 100534268 100534268 G T MTTP Nonsense_Mutation p.G730* 0.13 TCGA-CA-6717-01 4 10086131 10086131 A C WDR1 Missense_Mutation p.C325W 0.13 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 4 101108931 101108931 G A DDIT4L Missense_Mutation p.S162F 0.16 tolerated(0.05) benign(0.066) TCGA-CA-6717-01 4 102030183 102030183 G A PPP3CA Silent p.V104V 0.23 TCGA-CA-6717-01 4 102946614 102946614 G A BANK1 Silent p.P514P 0.12 TCGA-CA-6717-01 4 103555981 103555981 C T MANBA Silent p.P793P 0.14 TCGA-CA-6717-01 4 103910986 103910986 C A SLC9B1 Missense_Mutation p.R61I 0.22 deleterious(0.05) possibly_damaging(0.481) TCGA-CA-6717-01 4 103911035 103911035 C A SLC9B1 Nonsense_Mutation p.E45* 0.11 TCGA-CA-6717-01 4 104035708 104035708 T A CENPE Missense_Mutation p.I2482F 0.22 probably_damaging(0.972) TCGA-CA-6717-01 4 104041484 104041484 G A CENPE Nonsense_Mutation p.R2384* 0.07 TCGA-CA-6717-01 4 104062044 104062044 A C CENPE Missense_Mutation p.L1894R 0.17 possibly_damaging(0.818) TCGA-CA-6717-01 4 10444748 10444748 G T ZNF518B Missense_Mutation p.L1069I 0.28 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 4 10447391 10447391 A G ZNF518B Missense_Mutation p.F188L 0.20 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 4 104510940 104510940 C A TACR3 Missense_Mutation p.D433Y 0.09 deleterious(0.01) possibly_damaging(0.547) TCGA-CA-6717-01 4 105412346 105412346 T C CXXC4 Missense_Mutation p.H205R 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.651) TCGA-CA-6717-01 4 10542210 10542210 C T CLNK Silent p.P170P 0.23 TCGA-CA-6717-01 4 106156139 106156139 C T TET2 Missense_Mutation p.A347V 0.17 tolerated(1) benign(0) TCGA-CA-6717-01 4 106159318 106159318 T G TET2 Intron 0.21 TCGA-CA-6717-01 4 106159672 106159672 A G TET2 Intron 0.12 TCGA-CA-6717-01 4 106164059 106164059 C A TET2 Missense_Mutation p.S1190Y 0.10 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 4 106639136 106639136 A C GSTCD Missense_Mutation p.L122F 0.20 deleterious(0.01) benign(0.002) TCGA-CA-6717-01 4 106650580 106650580 G T GSTCD Silent p.V388V 0.11 TCGA-CA-6717-01 4 106755648 106755648 G T GSTCD Missense_Mutation p.D521Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 106755689 106755689 C T GSTCD Silent p.F534F 0.24 TCGA-CA-6717-01 4 106863472 106863472 A C NPNT Missense_Mutation p.K288Q 0.21 tolerated(0.05) benign(0.131) TCGA-CA-6717-01 4 1073440 1073440 C T RNF212 Silent p.P167P 0.17 TCGA-CA-6717-01 4 107845023 107845023 C A DKK2 3'UTR 0.26 TCGA-CA-6717-01 4 108552891 108552891 T G PAPSS1 Missense_Mutation p.K544N 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-CA-6717-01 4 108581174 108581174 T G PAPSS1 Missense_Mutation p.N242H 0.09 tolerated(0.06) possibly_damaging(0.882) TCGA-CA-6717-01 4 108820825 108820825 A C SGMS2 Missense_Mutation p.M184L 0.09 tolerated(0.39) benign(0.002) TCGA-CA-6717-01 4 108999468 108999468 A G LEF1 Missense_Mutation p.F306L 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 109588516 109588516 G T OSTC 3'UTR 0.25 TCGA-CA-6717-01 4 110452662 110452662 A G SEC24B Missense_Mutation p.D1125G 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 4 110606481 110606481 T C CCDC109B Silent p.F297F 0.13 TCGA-CA-6717-01 4 110610629 110610629 C A CASP6 Nonsense_Mutation p.E247* 0.11 TCGA-CA-6717-01 4 110670693 110670693 G A CFI Nonsense_Mutation p.R336* 0.11 TCGA-CA-6717-01 4 110670723 110670723 A C CFI Missense_Mutation p.S326A 0.25 tolerated(0.28) benign(0.008) TCGA-CA-6717-01 4 110723079 110723079 A C CFI Missense_Mutation p.F17V 0.11 tolerated(0.24) benign(0) TCGA-CA-6717-01 4 110791076 110791076 T C LRIT3 Missense_Mutation p.F391L 0.17 tolerated(0.66) benign(0.001) TCGA-CA-6717-01 4 110897205 110897205 A G EGF Missense_Mutation p.I623V 0.09 tolerated(0.27) benign(0.252) TCGA-CA-6717-01 4 110904662 110904662 C T EGF Missense_Mutation p.S819F 0.15 deleterious(0.04) benign(0.03) TCGA-CA-6717-01 4 111119543 111119543 C A ELOVL6 Intron 0.32 TCGA-CA-6717-01 4 111409713 111409713 G A ENPEP Missense_Mutation p.D221N 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 4 111427833 111427833 A G ENPEP Missense_Mutation p.E320G 0.16 deleterious(0.03) possibly_damaging(0.597) TCGA-CA-6717-01 4 111480866 111480866 A T ENPEP Missense_Mutation p.E902D 0.20 tolerated(0.17) benign(0.119) TCGA-CA-6717-01 4 113345113 113345113 A C ALPK1 Missense_Mutation p.K163N 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 113507621 113507621 G T C4orf21 Missense_Mutation p.T1299N 0.12 deleterious(0) possibly_damaging(0.648) TCGA-CA-6717-01 4 113508850 113508850 G T C4orf21 Silent p.T1121T 0.14 TCGA-CA-6717-01 4 113539546 113539546 T C C4orf21 Missense_Mutation p.K551R 0.09 tolerated(0.36) benign(0.002) TCGA-CA-6717-01 4 113575252 113575252 G T LARP7 Missense_Mutation p.K542N 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 114263040 114263040 T G ANK2 Missense_Mutation p.F1364V 0.14 probably_damaging(0.999) TCGA-CA-6717-01 4 114275979 114275979 C T ANK2 Missense_Mutation p.R2069C 0.19 probably_damaging(0.944) TCGA-CA-6717-01 4 114278263 114278263 C A ANK2 Missense_Mutation p.S2830Y 0.14 possibly_damaging(0.694) TCGA-CA-6717-01 4 114279367 114279367 C A ANK2 Missense_Mutation p.A3198D 0.22 benign(0.326) TCGA-CA-6717-01 4 114284560 114284560 C A ANK2 Missense_Mutation p.S3608Y 0.10 probably_damaging(1) TCGA-CA-6717-01 4 114286272 114286272 C T ANK2 Missense_Mutation p.L3656F 0.26 benign(0.037) TCGA-CA-6717-01 4 114823508 114823508 C A ARSJ Missense_Mutation p.K574N 0.14 tolerated_low_confidence(0.42) benign(0.403) TCGA-CA-6717-01 4 114899596 114899596 C A ARSJ Missense_Mutation p.G132V 0.09 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 4 115544596 115544596 G A UGT8 Missense_Mutation p.R187H 0.26 tolerated(0.33) benign(0.006) TCGA-CA-6717-01 4 115856450 115856450 A C NDST4 Missense_Mutation p.I483S 0.12 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 4 115997437 115997437 G T NDST4 Silent p.L252L 0.17 TCGA-CA-6717-01 4 115998159 115998159 G A NDST4 Nonsense_Mutation p.R12* 0.18 TCGA-CA-6717-01 4 118975012 118975012 C A NDST3 5'UTR 0.16 TCGA-CA-6717-01 4 119148098 119148098 C T NDST3 Missense_Mutation p.R594C 0.18 deleterious(0) benign(0.133) TCGA-CA-6717-01 4 119459044 119459044 C T CEP170P1 RNA 0.07 TCGA-CA-6717-01 4 119661944 119661944 G T SEC24D Missense_Mutation p.F704L 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 119661945 119661945 A C SEC24D Missense_Mutation p.F704C 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 119678999 119678999 T G SEC24D Missense_Mutation p.K433T 0.09 deleterious(0.01) benign(0.062) TCGA-CA-6717-01 4 119754819 119754819 C T SEC24D Silent p.P11P 0.11 TCGA-CA-6717-01 4 119947836 119947836 C T SYNPO2 Silent p.L104L 0.13 TCGA-CA-6717-01 4 119951918 119951918 C T SYNPO2 Missense_Mutation p.S663L 0.09 deleterious(0.02) benign(0.207) TCGA-CA-6717-01 4 119952846 119952846 C A SYNPO2 Silent p.L972L 0.09 TCGA-CA-6717-01 4 120085496 120085496 A C MYOZ2 Missense_Mutation p.K169N 0.13 tolerated(0.12) benign(0.142) TCGA-CA-6717-01 4 120160929 120160929 A T USP53 Missense_Mutation p.K5N 0.10 deleterious(0) probably_damaging(0.946) TCGA-CA-6717-01 4 120240133 120240133 G T FABP2 3'UTR 0.14 TCGA-CA-6717-01 4 120241909 120241909 T C FABP2 Silent p.E52E 0.13 TCGA-CA-6717-01 4 1219303 1219303 G A CTBP1 Missense_Mutation p.S131L 0.17 deleterious(0) benign(0.053) TCGA-CA-6717-01 4 122068317 122068317 C T TNIP3 Missense_Mutation p.E285K 0.21 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 4 122082321 122082321 C A TNIP3 Missense_Mutation p.K116N 0.20 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 122803561 122803561 C A TRPC3 Missense_Mutation p.K857N 0.20 tolerated(0.05) possibly_damaging(0.566) TCGA-CA-6717-01 4 122825652 122825652 G T TRPC3 Missense_Mutation p.T693N 0.15 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 4 123107283 123107283 T G KIAA1109 Missense_Mutation p.L151V 0.10 benign(0.003) TCGA-CA-6717-01 4 123107297 123107297 G A KIAA1109 Silent p.E155E 0.11 TCGA-CA-6717-01 4 123113407 123113407 G T KIAA1109 Nonsense_Mutation p.E309* 0.21 TCGA-CA-6717-01 4 123222548 123222548 T C KIAA1109 Missense_Mutation p.F3161S 0.13 probably_damaging(0.993) TCGA-CA-6717-01 4 123254886 123254886 G T KIAA1109 Missense_Mutation p.K3856N 0.11 probably_damaging(0.967) TCGA-CA-6717-01 4 123268917 123268917 C A KIAA1109 Missense_Mutation p.S4371Y 0.15 probably_damaging(0.991) TCGA-CA-6717-01 4 123329154 123329154 T C ADAD1 Silent p.H272H 0.09 TCGA-CA-6717-01 4 123333752 123333752 C T ADAD1 Missense_Mutation p.S346F 0.29 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 123350934 123350934 T C ADAD1 3'UTR 0.23 TCGA-CA-6717-01 4 123377302 123377302 C A IL2 Missense_Mutation p.K68N 0.10 tolerated(0.1) benign(0.094) TCGA-CA-6717-01 4 123377546 123377546 A G IL2 Missense_Mutation p.V17A 0.12 tolerated(0.25) benign(0.013) TCGA-CA-6717-01 4 123542069 123542069 T G IL21 Missense_Mutation p.D33A 0.11 tolerated(0.2) probably_damaging(0.999) TCGA-CA-6717-01 4 123949434 123949434 C T SPATA5 Nonsense_Mutation p.R655* 0.10 TCGA-CA-6717-01 4 124324230 124324230 C A SPRY1 3'UTR 0.13 TCGA-CA-6717-01 4 1246273 1246273 A C CTBP1 5'Flank 0.26 TCGA-CA-6717-01 4 1246403 1246403 T G CTBP1 5'Flank 0.26 TCGA-CA-6717-01 4 125590709 125590709 G T ANKRD50 Silent p.S1241S 0.09 TCGA-CA-6717-01 4 126241425 126241425 G T FAT4 Missense_Mutation p.A1287S 0.13 probably_damaging(0.988) TCGA-CA-6717-01 4 126241962 126241962 G T FAT4 Missense_Mutation p.G1466C 0.11 probably_damaging(0.997) TCGA-CA-6717-01 4 126242082 126242082 G T FAT4 Nonsense_Mutation p.E1506* 0.20 TCGA-CA-6717-01 4 126242399 126242399 G A FAT4 Silent p.R1611R 0.11 TCGA-CA-6717-01 4 126329601 126329601 T C FAT4 Missense_Mutation p.S1858P 0.12 probably_damaging(0.995) TCGA-CA-6717-01 4 126336449 126336449 G T FAT4 Nonsense_Mutation p.E2111* 0.27 TCGA-CA-6717-01 4 126337719 126337719 G T FAT4 Missense_Mutation p.Q2320H 0.12 possibly_damaging(0.863) TCGA-CA-6717-01 4 126337771 126337771 G T FAT4 Missense_Mutation p.D2338Y 0.16 probably_damaging(1) TCGA-CA-6717-01 4 126369632 126369632 G A FAT4 Silent p.A2487A 0.10 TCGA-CA-6717-01 4 126370701 126370701 C T FAT4 Nonsense_Mutation p.R2844* 0.19 TCGA-CA-6717-01 4 126370720 126370720 C A FAT4 Missense_Mutation p.S2850Y 0.25 probably_damaging(1) TCGA-CA-6717-01 4 126371320 126371320 A G FAT4 Missense_Mutation p.D3050G 0.26 possibly_damaging(0.648) TCGA-CA-6717-01 4 126411644 126411644 T G FAT4 Missense_Mutation p.F4556C 0.10 probably_damaging(0.995) TCGA-CA-6717-01 4 126412507 126412507 T C FAT4 Missense_Mutation p.S4844P 0.09 probably_damaging(0.993) TCGA-CA-6717-01 4 128694630 128694630 C T SLC25A31 Silent p.G283G 0.17 TCGA-CA-6717-01 4 128724896 128724896 A G HSPA4L Missense_Mutation p.N259S 0.22 tolerated(0.07) possibly_damaging(0.531) TCGA-CA-6717-01 4 128726313 128726313 C A HSPA4L Missense_Mutation p.F357L 0.19 tolerated(0.06) benign(0.058) TCGA-CA-6717-01 4 128732660 128732660 C T HSPA4L Missense_Mutation p.R483C 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 128807020 128807020 T C PLK4 Silent p.H165H 0.21 TCGA-CA-6717-01 4 128807046 128807046 C A PLK4 Missense_Mutation p.T174N 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 128951736 128951736 C T C4orf29 Nonsense_Mutation p.R384* 0.26 TCGA-CA-6717-01 4 129035844 129035844 G T LARP1B Nonsense_Mutation p.E370* 0.19 TCGA-CA-6717-01 4 129120613 129120613 T C LARP1B Missense_Mutation p.S675P 0.09 deleterious(0) possibly_damaging(0.824) TCGA-CA-6717-01 4 129793345 129793345 G T JADE1 Missense_Mutation p.K819N 0.18 tolerated(0.18) benign(0.273) TCGA-CA-6717-01 4 129864328 129864328 T C SCLT1 Missense_Mutation p.I485M 0.09 tolerated(0.19) benign(0.067) TCGA-CA-6717-01 4 129886416 129886416 G A SCLT1 Nonsense_Mutation p.Q279* 0.09 TCGA-CA-6717-01 4 13338833 13338833 C T HSP90AB2P RNA 0.30 TCGA-CA-6717-01 4 134071394 134071394 C T PCDH10 Silent p.F33F 0.10 TCGA-CA-6717-01 4 134072889 134072889 G A PCDH10 Missense_Mutation p.D532N 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 134111322 134111322 C A PCDH10 3'UTR 0.15 TCGA-CA-6717-01 4 135121962 135121962 C A PABPC4L Missense_Mutation p.M129I 0.19 deleterious(0) possibly_damaging(0.729) TCGA-CA-6717-01 4 135122193 135122193 G C PABPC4L Missense_Mutation p.H52Q 0.08 tolerated_low_confidence(0.62) benign(0.014) TCGA-CA-6717-01 4 13604820 13604820 G A BOD1L1 Missense_Mutation p.S1235F 0.09 possibly_damaging(0.668) TCGA-CA-6717-01 4 13606342 13606342 G T BOD1L1 Missense_Mutation p.P728T 0.09 benign(0.11) TCGA-CA-6717-01 4 13606401 13606401 G T BOD1L1 Missense_Mutation p.S708Y 0.10 possibly_damaging(0.59) TCGA-CA-6717-01 4 13616260 13616260 G A BOD1L1 Missense_Mutation p.T245I 0.07 benign(0.006) TCGA-CA-6717-01 4 138442180 138442180 C T PCDH18 3'UTR 0.13 TCGA-CA-6717-01 4 138451215 138451215 G T PCDH18 Silent p.I676I 0.26 TCGA-CA-6717-01 4 138452007 138452007 T G PCDH18 Missense_Mutation p.E412D 0.14 tolerated(0.59) probably_damaging(0.988) TCGA-CA-6717-01 4 138452699 138452699 A C PCDH18 Missense_Mutation p.F182V 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 138452883 138452883 A C PCDH18 Silent p.L120L 0.10 TCGA-CA-6717-01 4 138453075 138453075 C A PCDH18 Missense_Mutation p.L56F 0.13 tolerated(0.69) benign(0.003) TCGA-CA-6717-01 4 138453141 138453141 A C PCDH18 Missense_Mutation p.I34M 0.10 deleterious(0) possibly_damaging(0.629) TCGA-CA-6717-01 4 138453339 138453339 A C PCDH18 5'UTR 0.18 TCGA-CA-6717-01 4 139104434 139104434 T G SLC7A11 Missense_Mutation p.N314T 0.11 tolerated(0.73) possibly_damaging(0.472) TCGA-CA-6717-01 4 140272740 140272740 G T NAA15 Missense_Mutation p.R330I 0.10 deleterious(0.04) possibly_damaging(0.616) TCGA-CA-6717-01 4 140280895 140280895 A C NAA15 Splice_Site p.X420_splice 0.08 TCGA-CA-6717-01 4 140306013 140306013 A C NAA15 Missense_Mutation p.D728A 0.11 tolerated(0.27) benign(0.184) TCGA-CA-6717-01 4 140810454 140810454 G A MAML3 Intron 0.16 TCGA-CA-6717-01 4 140812013 140812013 G A MAML3 Nonsense_Mutation p.R193* 0.23 TCGA-CA-6717-01 4 141074238 141074238 C A MAML3 Nonsense_Mutation p.E82* 0.19 TCGA-CA-6717-01 4 141317264 141317264 G A CLGN Missense_Mutation p.A327V 0.29 deleterious(0.01) benign(0.225) TCGA-CA-6717-01 4 141320036 141320036 G T CLGN Missense_Mutation p.P285T 0.09 deleterious(0) possibly_damaging(0.852) TCGA-CA-6717-01 4 141321545 141321545 G A CLGN Silent p.F220F 0.17 TCGA-CA-6717-01 4 141448642 141448642 G T ELMOD2 Missense_Mutation p.K55N 0.12 deleterious(0) possibly_damaging(0.807) TCGA-CA-6717-01 4 141598187 141598187 A C TBC1D9 Nonsense_Mutation p.L307* 0.10 TCGA-CA-6717-01 4 142153756 142153756 T C ZNF330 Silent p.C216C 0.25 TCGA-CA-6717-01 4 142654029 142654029 C A IL15 3'UTR 0.22 TCGA-CA-6717-01 4 144119057 144119057 T C USP38 Missense_Mutation p.S344P 0.09 deleterious(0) probably_damaging(0.935) TCGA-CA-6717-01 4 144130726 144130726 A G USP38 Silent p.R471R 0.12 TCGA-CA-6717-01 4 144469166 144469166 G A SMARCA5 Missense_Mutation p.R953H 0.13 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 4 144917397 144917397 G T GYPB 3'UTR 0.09 TCGA-CA-6717-01 4 144922376 144922376 G T GYPB Missense_Mutation p.S33Y 0.09 deleterious(0.01) probably_damaging(0.951) TCGA-CA-6717-01 4 145032296 145032296 T G GYPA 3'UTR 0.23 TCGA-CA-6717-01 4 145636576 145636576 G A HHIP Missense_Mutation p.E558K 0.20 deleterious(0.02) possibly_damaging(0.709) TCGA-CA-6717-01 4 145640106 145640106 A G HHIP Silent p.K586K 0.10 TCGA-CA-6717-01 4 146061117 146061117 T G OTUD4 Missense_Mutation p.N639H 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 146436151 146436151 G A SMAD1 Missense_Mutation p.R129K 0.08 tolerated(0.21) possibly_damaging(0.874) TCGA-CA-6717-01 4 146463818 146463818 C T SMAD1 Missense_Mutation p.A248V 0.18 tolerated(0.62) benign(0.001) TCGA-CA-6717-01 4 146467907 146467907 C T SMAD1 Silent p.Y276Y 0.12 TCGA-CA-6717-01 4 146475164 146475164 T C SMAD1 Missense_Mutation p.M409T 0.10 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 4 146563621 146563621 T G MMAA Silent p.S182S 0.16 TCGA-CA-6717-01 4 146575166 146575166 C T MMAA Silent p.I280I 0.10 TCGA-CA-6717-01 4 146576364 146576364 C A MMAA Missense_Mutation p.F345L 0.08 tolerated(0.07) possibly_damaging(0.708) TCGA-CA-6717-01 4 146601547 146601547 A C C4orf51 Missense_Mutation p.Q64H 0.31 tolerated(0.08) benign(0.004) TCGA-CA-6717-01 4 147204409 147204409 G A SLC10A7 Missense_Mutation p.S261L 0.11 tolerated(0.68) benign(0.001) TCGA-CA-6717-01 4 147824792 147824792 C A TTC29 Nonsense_Mutation p.E164* 0.14 TCGA-CA-6717-01 4 148407242 148407242 A G EDNRA Missense_Mutation p.N137D 0.10 tolerated(0.08) probably_damaging(0.938) TCGA-CA-6717-01 4 148457174 148457174 T G EDNRA Missense_Mutation p.L298R 0.12 deleterious(0.02) probably_damaging(0.992) TCGA-CA-6717-01 4 148552650 148552650 C A TMEM184C Missense_Mutation p.S258Y 0.17 deleterious(0) probably_damaging(0.928) TCGA-CA-6717-01 4 148575157 148575157 C A PRMT10 Nonsense_Mutation p.E631* 0.26 TCGA-CA-6717-01 4 148575201 148575201 C T PRMT10 Missense_Mutation p.R616H 0.09 deleterious(0.01) benign(0.433) TCGA-CA-6717-01 4 148594936 148594936 C T PRMT10 Missense_Mutation p.R143H 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 4 149073665 149073665 G A NR3C2 Missense_Mutation p.T822M 0.22 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 4 149181258 149181258 C T NR3C2 Missense_Mutation p.R590Q 0.37 deleterious(0.01) benign(0.238) TCGA-CA-6717-01 4 149356558 149356558 T G NR3C2 Missense_Mutation p.E485D 0.15 tolerated(0.13) benign(0) TCGA-CA-6717-01 4 15034787 15034787 C T CPEB2 Nonsense_Mutation p.R710* 0.14 TCGA-CA-6717-01 4 15063747 15063747 T C CPEB2 Missense_Mutation p.Y914H 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6717-01 4 151186759 151186759 A C LRBA 3'UTR 0.27 TCGA-CA-6717-01 4 151231417 151231417 A G LRBA Missense_Mutation p.W2616R 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6717-01 4 151388882 151388882 A G LRBA Silent p.N2252N 0.14 TCGA-CA-6717-01 4 151770106 151770106 T G LRBA Missense_Mutation p.E1401D 0.17 tolerated(0.09) probably_damaging(0.986) TCGA-CA-6717-01 4 151773133 151773133 C A LRBA Missense_Mutation p.K1243N 0.22 tolerated_low_confidence(0.25) possibly_damaging(0.511) TCGA-CA-6717-01 4 151773136 151773136 C T LRBA Silent p.A1242A 0.14 TCGA-CA-6717-01 4 151773148 151773148 C T LRBA Silent p.E1238E 0.14 TCGA-CA-6717-01 4 152567866 152567866 T C FAM160A1 Silent p.Y461Y 0.19 TCGA-CA-6717-01 4 152629190 152629190 C T PET112 Missense_Mutation p.R276Q 0.09 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.15 TCGA-CA-6717-01 4 153250882 153250882 C T FBXW7 Missense_Mutation p.R393Q 0.22 deleterious(0.02) benign(0.293) TCGA-CA-6717-01 4 153332915 153332915 C T FBXW7 Missense_Mutation p.R14Q 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-CA-6717-01 4 153691118 153691118 C T TIGD4 Missense_Mutation p.E347K 0.08 tolerated(0.23) possibly_damaging(0.699) TCGA-CA-6717-01 4 153692076 153692076 G A TIGD4 Silent p.I27I 0.18 TCGA-CA-6717-01 4 153802275 153802275 A G ARFIP1 Missense_Mutation p.H191R 0.16 deleterious(0.03) benign(0.016) TCGA-CA-6717-01 4 154236669 154236669 A C TRIM2 Missense_Mutation p.N515H 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-CA-6717-01 4 154256206 154256206 T G TRIM2 3'UTR 0.19 TCGA-CA-6717-01 4 154271270 154271270 T C MND1 Missense_Mutation p.F20L 0.18 deleterious(0.01) benign(0.424) TCGA-CA-6717-01 4 154336092 154336092 C T MND1 3'UTR 0.12 TCGA-CA-6717-01 4 154504717 154504717 A C KIAA0922 Missense_Mutation p.D318A 0.08 deleterious(0) possibly_damaging(0.903) TCGA-CA-6717-01 4 154504810 154504810 C A KIAA0922 Missense_Mutation p.S349Y 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 154533451 154533451 A C KIAA0922 Missense_Mutation p.N1156H 0.27 deleterious(0.01) benign(0.382) TCGA-CA-6717-01 4 155155848 155155848 G A DCHS2 Missense_Mutation p.S2864F 0.20 tolerated(0.69) benign(0.01) TCGA-CA-6717-01 4 155253694 155253694 C A DCHS2 Missense_Mutation p.K723N 0.24 tolerated(0.05) benign(0.141) TCGA-CA-6717-01 4 155264766 155264766 T G DCHS2 Missense_Mutation p.K278T 0.11 tolerated(0.55) benign(0.005) TCGA-CA-6717-01 4 155487037 155487037 G A FGB Silent p.P64P 0.13 TCGA-CA-6717-01 4 155505269 155505269 C A FGA 3'UTR 0.17 TCGA-CA-6717-01 4 155510095 155510095 C A FGA Missense_Mutation p.G72W 0.08 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 4 155521 155521 A G ZNF718 RNA 0.22 TCGA-CA-6717-01 4 155531314 155531314 T G FGG Missense_Mutation p.K146T 0.21 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 4 155533704 155533704 G T FGG Missense_Mutation p.L20I 0.07 tolerated(0.09) benign(0.025) TCGA-CA-6717-01 4 15560801 15560801 G A CC2D2A Missense_Mutation p.R948Q 0.07 tolerated(0.17) probably_damaging(0.935) TCGA-CA-6717-01 4 155749080 155749080 C A RBM46 Missense_Mutation p.S488Y 0.25 tolerated(0.06) benign(0.135) TCGA-CA-6717-01 4 155954 155954 T C ZNF718 RNA 0.16 TCGA-CA-6717-01 4 156135752 156135752 C A NPY2R Missense_Mutation p.L221I 0.30 tolerated(0.94) benign(0.003) TCGA-CA-6717-01 4 156136493 156136493 G T NPY2R 3'UTR 0.15 TCGA-CA-6717-01 4 156136801 156136801 A C NPY2R 3'UTR 0.10 TCGA-CA-6717-01 4 156137631 156137631 T G NPY2R 3'UTR 0.17 TCGA-CA-6717-01 4 156138117 156138117 C A NPY2R 3'UTR 0.14 TCGA-CA-6717-01 4 156274459 156274459 A C MAP9 Missense_Mutation p.S472A 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 15640297 15640297 C A FBXL5 Missense_Mutation p.M139I 0.13 tolerated(0.13) probably_damaging(0.93) TCGA-CA-6717-01 4 156625138 156625138 G T GUCY1A3 Nonsense_Mutation p.E104* 0.11 TCGA-CA-6717-01 4 156631771 156631771 C A GUCY1A3 Missense_Mutation p.L152I 0.17 deleterious(0.01) possibly_damaging(0.898) TCGA-CA-6717-01 4 156715063 156715063 A C GUCY1B3 Missense_Mutation p.K184T 0.17 tolerated(0.15) benign(0.015) TCGA-CA-6717-01 4 156723672 156723672 G T GUCY1B3 Missense_Mutation p.D452Y 0.12 deleterious(0.01) probably_damaging(0.951) TCGA-CA-6717-01 4 156725806 156725806 G A GUCY1B3 Missense_Mutation p.R539Q 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 156725810 156725810 C A GUCY1B3 Nonsense_Mutation p.Y540* 0.20 TCGA-CA-6717-01 4 156824846 156824846 G A TDO2 5'Flank 0.31 TCGA-CA-6717-01 4 15689435 15689435 C T FAM200B Missense_Mutation p.R279C 0.27 tolerated(0.19) benign(0) TCGA-CA-6717-01 4 15689738 15689738 T G FAM200B Missense_Mutation p.L380V 0.10 tolerated(0.05) probably_damaging(0.99) TCGA-CA-6717-01 4 15690706 15690706 T G FAM200B 3'UTR 0.16 TCGA-CA-6717-01 4 15716924 15716924 C A BST1 Missense_Mutation p.S184Y 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 4 15717390 15717390 C A BST1 Silent p.I224I 0.28 TCGA-CA-6717-01 4 158073893 158073893 G A GLRB Missense_Mutation p.A310T 0.12 tolerated(1) benign(0.197) TCGA-CA-6717-01 4 158142944 158142944 G A GRIA2 Missense_Mutation p.A72T 0.10 tolerated(0.15) benign(0.36) TCGA-CA-6717-01 4 159048612 159048612 G T FAM198B Missense_Mutation p.L511I 0.25 deleterious(0) probably_damaging(0.953) TCGA-CA-6717-01 4 159559166 159559166 T G RXFP1 Silent p.L326L 0.12 TCGA-CA-6717-01 4 159568150 159568150 T G RXFP1 Missense_Mutation p.F518C 0.13 deleterious(0) probably_damaging(0.967) TCGA-CA-6717-01 4 159601666 159601666 C A ETFDH Missense_Mutation p.L28I 0.10 tolerated(0.44) benign(0.02) TCGA-CA-6717-01 4 159790454 159790454 G A FNIP2 Missense_Mutation p.R889Q 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 160253642 160253642 G T RAPGEF2 Missense_Mutation p.R482I 0.10 deleterious(0.01) benign(0.01) TCGA-CA-6717-01 4 160273997 160273997 A C RAPGEF2 Missense_Mutation p.E1181D 0.08 tolerated_low_confidence(0.29) benign(0.008) TCGA-CA-6717-01 4 160274695 160274695 C T RAPGEF2 Missense_Mutation p.S1222F 0.12 deleterious_low_confidence(0) benign(0.019) TCGA-CA-6717-01 4 160277271 160277271 G A RAPGEF2 Missense_Mutation p.A1479T 0.14 tolerated_low_confidence(0.09) benign(0.094) TCGA-CA-6717-01 4 162307226 162307226 T C FSTL5 Missense_Mutation p.I739M 0.10 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 4 162402286 162402286 A G FSTL5 Silent p.V498V 0.08 TCGA-CA-6717-01 4 162697146 162697146 C A FSTL5 Nonsense_Mutation p.E164* 0.07 TCGA-CA-6717-01 4 164246714 164246714 T C NPY1R Missense_Mutation p.N299S 0.14 deleterious(0.02) possibly_damaging(0.893) TCGA-CA-6717-01 4 164247176 164247176 T G NPY1R Missense_Mutation p.Q177H 0.11 tolerated(0.33) benign(0.004) TCGA-CA-6717-01 4 164272330 164272330 G A NPY5R Missense_Mutation p.R302K 0.17 tolerated(0.47) benign(0.004) TCGA-CA-6717-01 4 164272752 164272752 C T NPY5R Missense_Mutation p.L443F 0.19 tolerated_low_confidence(0.52) benign(0.003) TCGA-CA-6717-01 4 164393326 164393326 C A TKTL2 Nonsense_Mutation p.E521* 0.10 TCGA-CA-6717-01 4 164393562 164393562 C T TKTL2 Missense_Mutation p.R442Q 0.15 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 4 164449880 164449880 G A MARCH1 3'UTR 0.19 TCGA-CA-6717-01 4 164466827 164466827 G A MARCH1 Silent p.I164I 0.11 TCGA-CA-6717-01 4 165879266 165879266 G C FAM218A 3'UTR 0.10 TCGA-CA-6717-01 4 165890791 165890791 A G TRIM61 Missense_Mutation p.S122P 0.07 tolerated(0.4) possibly_damaging(0.449) TCGA-CA-6717-01 4 165891189 165891189 C A TRIM61 5'UTR 0.14 TCGA-CA-6717-01 4 165962855 165962855 T G TRIM60 3'UTR 0.14 TCGA-CA-6717-01 4 165962863 165962863 C A TRIM60 3'UTR 0.14 TCGA-CA-6717-01 4 166000932 166000932 C A TMEM192 Nonsense_Mutation p.E232* 0.14 TCGA-CA-6717-01 4 166009621 166009621 T G TMEM192 Silent p.T191T 0.09 TCGA-CA-6717-01 4 166261424 166261424 C A MSMO1 Missense_Mutation p.L195I 0.18 deleterious(0.01) probably_damaging(0.917) TCGA-CA-6717-01 4 166388983 166388983 G A CPE Silent p.K216K 0.11 TCGA-CA-6717-01 4 166414352 166414352 A G CPE Silent p.R381R 0.21 TCGA-CA-6717-01 4 166418790 166418790 C A CPE 3'UTR 0.11 TCGA-CA-6717-01 4 166795150 166795150 G A TLL1 Missense_Mutation p.D32N 0.10 tolerated_low_confidence(0.1) benign(0.095) TCGA-CA-6717-01 4 166924610 166924610 A G TLL1 Missense_Mutation p.K234E 0.18 deleterious(0.01) possibly_damaging(0.714) TCGA-CA-6717-01 4 166960493 166960493 T G TLL1 Missense_Mutation p.I387M 0.15 deleterious(0) probably_damaging(0.915) TCGA-CA-6717-01 4 167656145 167656145 T C SPOCK3 Missense_Mutation p.D413G 0.16 tolerated_low_confidence(0.14) unknown(0) TCGA-CA-6717-01 4 169105746 169105746 C A ANXA10 Missense_Mutation p.L274I 0.19 tolerated(0.27) probably_damaging(0.999) TCGA-CA-6717-01 4 169138178 169138178 G A DDX60 Missense_Mutation p.S1682F 0.27 deleterious(0.02) benign(0.167) TCGA-CA-6717-01 4 169172258 169172258 C A DDX60 Splice_Site p.X1236_splice 0.11 TCGA-CA-6717-01 4 169227544 169227544 T G DDX60 Missense_Mutation p.I198L 0.28 tolerated(0.79) benign(0.001) TCGA-CA-6717-01 4 169232201 169232201 T C DDX60 Missense_Mutation p.T8A 0.08 tolerated_low_confidence(0.74) benign(0) TCGA-CA-6717-01 4 169282339 169282339 T G DDX60L Missense_Mutation p.K1651T 0.12 tolerated(0.68) benign(0.007) TCGA-CA-6717-01 4 169325240 169325240 C A DDX60L Missense_Mutation p.K1077N 0.09 tolerated(0.2) benign(0.009) TCGA-CA-6717-01 4 169819808 169819808 C A PALLD Silent p.I805I 0.19 TCGA-CA-6717-01 4 169923146 169923146 T G CBR4 Intron 0.09 TCGA-CA-6717-01 4 169928818 169928818 T G CBR4 Missense_Mutation p.N78H 0.20 deleterious(0.03) benign(0.005) TCGA-CA-6717-01 4 170321669 170321669 T C NEK1 Intron 0.16 TCGA-CA-6717-01 4 170398452 170398452 C A NEK1 Missense_Mutation p.D753Y 0.10 deleterious(0) possibly_damaging(0.694) TCGA-CA-6717-01 4 170663238 170663238 A C C4orf27 Missense_Mutation p.L173R 0.13 tolerated(0.11) benign(0.25) TCGA-CA-6717-01 4 173269816 173269816 C A GALNTL6 Missense_Mutation p.L177I 0.15 deleterious(0.04) probably_damaging(0.958) TCGA-CA-6717-01 4 174216643 174216643 G A GALNT7 Missense_Mutation p.R284Q 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-CA-6717-01 4 174448518 174448518 G T HAND2 Silent p.I188I 0.27 TCGA-CA-6717-01 4 175580225 175580225 G A GLRA3 Nonsense_Mutation p.R351* 0.29 TCGA-CA-6717-01 4 175749982 175749982 G A GLRA3 5'UTR 0.10 TCGA-CA-6717-01 4 17581474 17581474 G A LAP3 Missense_Mutation p.E44K 0.22 tolerated(0.18) benign(0.004) TCGA-CA-6717-01 4 175897099 175897099 T G ADAM29 Missense_Mutation p.F141L 0.16 tolerated(0.33) benign(0.01) TCGA-CA-6717-01 4 175897951 175897951 T C ADAM29 Silent p.C425C 0.11 TCGA-CA-6717-01 4 176733355 176733355 T C GPM6A Silent p.G8G 0.14 TCGA-CA-6717-01 4 17694996 17694996 C T FAM184B Missense_Mutation p.E473K 0.08 deleterious(0.05) probably_damaging(0.994) TCGA-CA-6717-01 4 177052822 177052822 G A WDR17 Missense_Mutation p.C368Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 177071014 177071014 A G WDR17 Missense_Mutation p.T676A 0.09 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 177081235 177081235 C A WDR17 Missense_Mutation p.F896L 0.14 tolerated(0.19) benign(0.298) TCGA-CA-6717-01 4 177098258 177098258 C A WDR17 Missense_Mutation p.L1206I 0.28 tolerated(0.22) probably_damaging(0.992) TCGA-CA-6717-01 4 177245339 177245339 G T SPCS3 Missense_Mutation p.E75D 0.17 tolerated(0.54) benign(0.003) TCGA-CA-6717-01 4 177650765 177650765 C T VEGFC Missense_Mutation p.E95K 0.13 tolerated(0.38) possibly_damaging(0.775) TCGA-CA-6717-01 4 17819073 17819073 G A NCAPG Missense_Mutation p.G322D 0.29 tolerated(0.75) benign(0) TCGA-CA-6717-01 4 17843988 17843988 A C NCAPG Missense_Mutation p.E970D 0.10 tolerated(0.13) benign(0.005) TCGA-CA-6717-01 4 17963557 17963557 T C LCORL Silent p.E133E 0.08 TCGA-CA-6717-01 4 1808406 1808406 G A FGFR3 Missense_Mutation p.D724N 0.18 deleterious(0) possibly_damaging(0.871) TCGA-CA-6717-01 4 1818641 1818641 C T LETM1 Missense_Mutation p.D582N 0.08 deleterious(0.03) benign(0.226) TCGA-CA-6717-01 4 183063637 183063637 C T AC108142.1 RNA 0.09 TCGA-CA-6717-01 4 183064120 183064120 C T AC108142.1 RNA 0.17 TCGA-CA-6717-01 4 183522104 183522104 C A TENM3 Missense_Mutation p.S180Y 0.09 tolerated_low_confidence(0.9) possibly_damaging(0.86) TCGA-CA-6717-01 4 183601838 183601838 C A TENM3 Silent p.I594I 0.10 TCGA-CA-6717-01 4 183601868 183601868 C T TENM3 Silent p.Y604Y 0.19 TCGA-CA-6717-01 4 183664473 183664473 C T TENM3 Missense_Mutation p.A1177V 0.23 deleterious(0) benign(0.003) TCGA-CA-6717-01 4 183676039 183676039 T G TENM3 Missense_Mutation p.S1507A 0.24 tolerated(0.62) benign(0.277) TCGA-CA-6717-01 4 183676234 183676234 C T TENM3 Missense_Mutation p.R1572C 0.11 deleterious(0.02) possibly_damaging(0.876) TCGA-CA-6717-01 4 183836687 183836687 T C DCTD Missense_Mutation p.Y23C 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6717-01 4 184367384 184367384 A G CDKN2AIP Missense_Mutation p.I183V 0.11 tolerated(0.29) unknown(0) TCGA-CA-6717-01 4 184368590 184368590 A C CDKN2AIP 3'UTR 0.25 TCGA-CA-6717-01 4 184629595 184629595 A C TRAPPC11 Missense_Mutation p.E1075D 0.26 tolerated(0.28) possibly_damaging(0.874) TCGA-CA-6717-01 4 185012484 185012484 T G ENPP6 Missense_Mutation p.N390T 0.20 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 4 185012491 185012491 C T ENPP6 Missense_Mutation p.V388I 0.09 tolerated(0.21) benign(0.026) TCGA-CA-6717-01 4 185038130 185038130 T G ENPP6 Missense_Mutation p.D245A 0.10 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 4 185038131 185038131 C T ENPP6 Missense_Mutation p.D245N 0.22 tolerated(0.13) probably_damaging(1) TCGA-CA-6717-01 4 185138798 185138798 T G ENPP6 Missense_Mutation p.K59Q 0.09 tolerated(0.07) probably_damaging(1) TCGA-CA-6717-01 4 185138817 185138817 C A ENPP6 Missense_Mutation p.E52D 0.32 tolerated(0.14) benign(0.014) TCGA-CA-6717-01 4 185138915 185138915 C T ENPP6 Missense_Mutation p.A20T 0.13 tolerated(0.46) benign(0.099) TCGA-CA-6717-01 4 185139000 185139000 T A ENPP6 5'UTR 0.25 TCGA-CA-6717-01 4 185599508 185599508 G A PRIMPOL Missense_Mutation p.E323K 0.10 probably_damaging(0.998) TCGA-CA-6717-01 4 185691593 185691593 G T ACSL1 Missense_Mutation p.S318Y 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 186097191 186097191 C T KIAA1430 Missense_Mutation p.D357N 0.08 tolerated(0.11) probably_damaging(0.938) TCGA-CA-6717-01 4 186111856 186111856 C A KIAA1430 Missense_Mutation p.K165N 0.08 deleterious(0.01) possibly_damaging(0.776) TCGA-CA-6717-01 4 186278829 186278829 T G SNX25 Missense_Mutation p.F699L 0.16 deleterious(0) benign(0.309) TCGA-CA-6717-01 4 186284539 186284539 G A SNX25 Missense_Mutation p.A815T 0.14 tolerated(0.18) benign(0.011) TCGA-CA-6717-01 4 186284587 186284587 C A SNX25 Missense_Mutation p.H831N 0.11 deleterious_low_confidence(0.01) benign(0.008) TCGA-CA-6717-01 4 186299135 186299135 A G LRP2BP Intron 0.15 TCGA-CA-6717-01 4 186379328 186379328 C T CCDC110 Missense_Mutation p.E805K 0.13 tolerated(0.12) possibly_damaging(0.733) TCGA-CA-6717-01 4 186379477 186379477 T - CCDC110 Frame_Shift_Del p.N755Mfs*18 0.20 TCGA-CA-6717-01 4 186379719 186379719 C A CCDC110 Missense_Mutation p.E674D 0.10 deleterious(0.01) possibly_damaging(0.482) TCGA-CA-6717-01 4 186380809 186380809 C A CCDC110 Missense_Mutation p.R311I 0.20 tolerated(0.1) probably_damaging(1) TCGA-CA-6717-01 4 186381352 186381353 - T CCDC110 Frame_Shift_Ins p.S130Kfs*5 0.14 TCGA-CA-6717-01 4 186536214 186536214 C T SORBS2 Silent p.P1013P 0.27 TCGA-CA-6717-01 4 186545631 186545631 T G SORBS2 Missense_Mutation p.I414L 0.12 tolerated(0.21) benign(0) TCGA-CA-6717-01 4 186599612 186599612 G A SORBS2 Nonsense_Mutation p.R74* 0.18 TCGA-CA-6717-01 4 187004655 187004655 C A TLR3 Silent p.V605V 0.12 TCGA-CA-6717-01 4 187005275 187005275 A C TLR3 Missense_Mutation p.K812T 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 187005299 187005299 A G TLR3 Missense_Mutation p.H820R 0.19 tolerated(0.28) benign(0.056) TCGA-CA-6717-01 4 187172471 187172471 G T KLKB1 Missense_Mutation p.R286I 0.08 tolerated(0.35) benign(0.246) TCGA-CA-6717-01 4 187206846 187206846 A C F11 Missense_Mutation p.E453D 0.20 tolerated(0.09) benign(0.03) TCGA-CA-6717-01 4 187510258 187510258 C T FAT1 Missense_Mutation p.A4419T 0.11 benign(0.022) TCGA-CA-6717-01 4 187518853 187518853 C T FAT1 Silent p.S4117S 0.18 TCGA-CA-6717-01 4 187521368 187521368 T G FAT1 Missense_Mutation p.Q3929H 0.11 possibly_damaging(0.797) TCGA-CA-6717-01 4 187540254 187540254 C T FAT1 Missense_Mutation p.E2496K 0.23 possibly_damaging(0.522) TCGA-CA-6717-01 4 187540561 187540561 C A FAT1 Missense_Mutation p.Q2393H 0.10 benign(0.002) TCGA-CA-6717-01 4 187542860 187542860 C T FAT1 Missense_Mutation p.R1627Q 0.12 benign(0.055) TCGA-CA-6717-01 4 187557305 187557305 G T FAT1 Missense_Mutation p.L1353M 0.15 benign(0.104) TCGA-CA-6717-01 4 187557968 187557968 T C FAT1 Missense_Mutation p.K1248R 0.08 probably_damaging(0.943) TCGA-CA-6717-01 4 187629596 187629596 T G FAT1 Missense_Mutation p.E462D 0.22 probably_damaging(0.93) TCGA-CA-6717-01 4 1902953 1902953 A C WHSC1 Missense_Mutation p.K191T 0.14 tolerated(0.39) benign(0.01) TCGA-CA-6717-01 4 1932364 1932364 G T WHSC1 Missense_Mutation p.E474D 0.16 tolerated(0.11) probably_damaging(0.926) TCGA-CA-6717-01 4 1957709 1957709 G T WHSC1 Splice_Site p.X892_splice 0.21 TCGA-CA-6717-01 4 1957753 1957753 A G WHSC1 Missense_Mutation p.N907D 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 20258328 20258328 G A SLIT2 Silent p.T71T 0.09 TCGA-CA-6717-01 4 20512710 20512710 C A SLIT2 Silent p.I336I 0.24 TCGA-CA-6717-01 4 20512757 20512757 C A SLIT2 Nonsense_Mutation p.S352* 0.12 TCGA-CA-6717-01 4 20535283 20535283 C T SLIT2 Missense_Mutation p.R593C 0.21 deleterious(0.04) possibly_damaging(0.76) TCGA-CA-6717-01 4 20570520 20570520 A G SLIT2 Missense_Mutation p.N994S 0.25 tolerated(0.29) benign(0.018) TCGA-CA-6717-01 4 2210021 2210021 C A POLN Missense_Mutation p.R136I 0.29 deleterious(0.02) benign(0.006) TCGA-CA-6717-01 4 22389342 22389342 C T GPR125 Missense_Mutation p.E1318K 0.19 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 2240639 2240639 C A HAUS3 Missense_Mutation p.L347F 0.13 tolerated(0.1) benign(0.363) TCGA-CA-6717-01 4 22475440 22475440 T C GPR125 Missense_Mutation p.E95G 0.10 tolerated(0.4) benign(0.04) TCGA-CA-6717-01 4 22694613 22694613 G A GBA3 5'UTR 0.28 TCGA-CA-6717-01 4 22820363 22820363 C A GBA3 Silent p.V409V 0.25 TCGA-CA-6717-01 4 2307004 2307004 C T ZFYVE28 Missense_Mutation p.E355K 0.12 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-CA-6717-01 4 2341209 2341209 G T ZFYVE28 Missense_Mutation p.F164L 0.08 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 4 23815832 23815832 G T PPARGC1A Missense_Mutation p.S425Y 0.18 tolerated(1) benign(0.046) TCGA-CA-6717-01 4 24557996 24557996 T G DHX15 Missense_Mutation p.N247H 0.17 tolerated(0.39) possibly_damaging(0.903) TCGA-CA-6717-01 4 24801983 24801983 A G SOD3 3'UTR 0.14 TCGA-CA-6717-01 4 24802427 24802427 G C SOD3 3'UTR 0.36 TCGA-CA-6717-01 4 25153622 25153622 T C SEPSECS Missense_Mutation p.Y255C 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 25265402 25265402 C T PI4K2B Missense_Mutation p.L337F 0.10 tolerated(0.52) benign(0.049) TCGA-CA-6717-01 4 25381999 25381999 T G ANAPC4 Missense_Mutation p.L45V 0.13 tolerated(0.28) probably_damaging(0.972) TCGA-CA-6717-01 4 25417117 25417117 A C ANAPC4 Missense_Mutation p.K619T 0.15 tolerated(0.46) benign(0.007) TCGA-CA-6717-01 4 25664176 25664176 C T SLC34A2 Silent p.L18L 0.18 TCGA-CA-6717-01 4 25780802 25780802 A C SEL1L3 Missense_Mutation p.H827Q 0.16 tolerated(0.14) possibly_damaging(0.864) TCGA-CA-6717-01 4 25931001 25931001 G T SMIM20 3'UTR 0.33 TCGA-CA-6717-01 4 26407847 26407847 T G RBPJ Missense_Mutation p.I50S 0.09 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 4 264828 264828 T G ZNF732 3'UTR 0.33 TCGA-CA-6717-01 4 265634 265634 C A ZNF732 Nonsense_Mutation p.E338* 0.31 TCGA-CA-6717-01 4 266228 266228 T G ZNF732 Missense_Mutation p.I140L 0.08 tolerated(0.11) benign(0) TCGA-CA-6717-01 4 2886309 2886309 G T ADD1 Missense_Mutation p.E142D 0.08 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 2895762 2895762 A G ADD1 Missense_Mutation p.E178G 0.10 deleterious(0) benign(0.036) TCGA-CA-6717-01 4 2943527 2943527 A C NOP14 Intron 0.28 TCGA-CA-6717-01 4 30724559 30724559 C T PCDH7 Silent p.I505I 0.24 TCGA-CA-6717-01 4 30724591 30724591 C T PCDH7 Missense_Mutation p.S516L 0.19 deleterious(0.01) possibly_damaging(0.572) TCGA-CA-6717-01 4 3149876 3149876 A C HTT Missense_Mutation p.K1147T 0.19 probably_damaging(0.968) TCGA-CA-6717-01 4 36115885 36115885 C T ARAP2 Missense_Mutation p.E1355K 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-CA-6717-01 4 36230279 36230279 C A ARAP2 Missense_Mutation p.R277I 0.10 deleterious(0) possibly_damaging(0.841) TCGA-CA-6717-01 4 37591973 37591973 A G C4orf19 Missense_Mutation p.N99S 0.11 deleterious(0.04) possibly_damaging(0.799) TCGA-CA-6717-01 4 37903932 37903932 A G TBC1D1 Silent p.G72G 0.26 TCGA-CA-6717-01 4 38016264 38016264 G A TBC1D1 Silent p.A184A 0.27 TCGA-CA-6717-01 4 38775202 38775202 G A TLR10 Silent p.S670S 0.17 TCGA-CA-6717-01 4 38798066 38798066 G T TLR1 3'UTR 0.09 TCGA-CA-6717-01 4 38799800 38799800 A C TLR1 Missense_Mutation p.L218R 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 38829553 38829553 G T TLR6 Missense_Mutation p.F514L 0.22 deleterious(0) benign(0.118) TCGA-CA-6717-01 4 38829662 38829662 A T TLR6 Missense_Mutation p.L478H 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 38830811 38830811 A G TLR6 Missense_Mutation p.V95A 0.11 tolerated(0.06) benign(0.019) TCGA-CA-6717-01 4 38910328 38910328 G T FAM114A1 Missense_Mutation p.R258I 0.17 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 4 38924512 38924512 A G FAM114A1 Missense_Mutation p.Q356R 0.10 tolerated(0.06) benign(0.097) TCGA-CA-6717-01 4 38995579 38995579 T G TMEM156 Missense_Mutation p.D133A 0.12 tolerated(0.05) benign(0.081) TCGA-CA-6717-01 4 39098345 39098345 C T KLHL5 Missense_Mutation p.R429W 0.22 deleterious(0) benign(0.402) TCGA-CA-6717-01 4 39098396 39098396 T G KLHL5 Missense_Mutation p.L446V 0.19 deleterious(0) possibly_damaging(0.718) TCGA-CA-6717-01 4 39236446 39236446 G T WDR19 Missense_Mutation p.D772Y 0.13 deleterious(0) possibly_damaging(0.521) TCGA-CA-6717-01 4 39257553 39257553 C A WDR19 Missense_Mutation p.F1029L 0.18 deleterious(0.01) benign(0.328) TCGA-CA-6717-01 4 39280183 39280183 T A WDR19 Nonsense_Mutation p.C1314* 0.13 TCGA-CA-6717-01 4 39310270 39310270 T C RFC1 Missense_Mutation p.E624G 0.17 tolerated(0.48) benign(0.001) TCGA-CA-6717-01 4 39310627 39310627 C A RFC1 Missense_Mutation p.R505I 0.22 deleterious(0.03) benign(0.028) TCGA-CA-6717-01 4 39515762 39515762 G T UGDH Missense_Mutation p.L69I 0.08 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 4 39874665 39874665 A G PDS5A Missense_Mutation p.S793P 0.07 tolerated(0.37) benign(0.02) TCGA-CA-6717-01 4 40104069 40104069 A C N4BP2 Missense_Mutation p.N202H 0.09 tolerated(0.37) possibly_damaging(0.711) TCGA-CA-6717-01 4 40123185 40123185 C T N4BP2 Missense_Mutation p.P1152S 0.11 tolerated(0.07) benign(0.23) TCGA-CA-6717-01 4 40123641 40123641 T C N4BP2 Missense_Mutation p.Y1304H 0.11 tolerated(0.54) benign(0.004) TCGA-CA-6717-01 4 40146318 40146318 G A N4BP2 Missense_Mutation p.V1681I 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 4 40245126 40245126 C T RHOH Silent p.N40N 0.19 TCGA-CA-6717-01 4 40245592 40245592 G T RHOH 3'UTR 0.10 TCGA-CA-6717-01 4 40350914 40350914 T G CHRNA9 Silent p.S127S 0.18 TCGA-CA-6717-01 4 41601024 41601024 T C LIMCH1 Missense_Mutation p.S109P 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 41748173 41748173 C A PHOX2B Missense_Mutation p.G199V 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-CA-6717-01 4 41983989 41983989 A C DCAF4L1 Missense_Mutation p.Q60H 0.18 tolerated(0.42) benign(0.001) TCGA-CA-6717-01 4 41986755 41986755 A C DCAF4L1 3'UTR 0.34 TCGA-CA-6717-01 4 41986924 41986924 G T DCAF4L1 3'UTR 0.15 TCGA-CA-6717-01 4 41987063 41987063 A C DCAF4L1 3'UTR 0.18 TCGA-CA-6717-01 4 42020145 42020145 G T SLC30A9 Nonsense_Mutation p.E98* 0.15 TCGA-CA-6717-01 4 42526819 42526819 C A ATP8A1 Nonsense_Mutation p.E590* 0.18 TCGA-CA-6717-01 4 4276472 4276472 G A LYAR Nonsense_Mutation p.Q152* 0.13 TCGA-CA-6717-01 4 42964988 42964988 G T GRXCR1 Missense_Mutation p.R155I 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 42965029 42965029 A C GRXCR1 Missense_Mutation p.K169Q 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-CA-6717-01 4 42965093 42965093 G A GRXCR1 Missense_Mutation p.R190Q 0.09 tolerated(0.47) benign(0.298) TCGA-CA-6717-01 4 42965096 42965096 G A GRXCR1 Missense_Mutation p.R191Q 0.09 tolerated(0.25) possibly_damaging(0.659) TCGA-CA-6717-01 4 43022434 43022434 G T GRXCR1 Nonsense_Mutation p.E231* 0.14 TCGA-CA-6717-01 4 435433 435433 C A ZNF721 3'Flank 0.34 TCGA-CA-6717-01 4 436526 436526 C A ZNF721 Missense_Mutation p.R577I 0.28 tolerated(0.16) possibly_damaging(0.615) TCGA-CA-6717-01 4 437702 437702 C A ZNF721 Missense_Mutation p.R185I 0.10 tolerated(0.13) possibly_damaging(0.53) TCGA-CA-6717-01 4 4389484 4389484 A C NSG1 Missense_Mutation p.K43T 0.14 deleterious(0.01) possibly_damaging(0.572) TCGA-CA-6717-01 4 44176993 44176993 G T KCTD8 Silent p.L412L 0.23 TCGA-CA-6717-01 4 46042962 46042962 A G GABRG1 3'UTR 0.33 TCGA-CA-6717-01 4 46067417 46067417 C T GABRG1 Missense_Mutation p.R169Q 0.20 deleterious(0) benign(0.252) TCGA-CA-6717-01 4 46314655 46314655 G A GABRA2 Nonsense_Mutation p.R112* 0.21 TCGA-CA-6717-01 4 46314708 46314708 C T GABRA2 Missense_Mutation p.R94Q 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-CA-6717-01 4 46930528 46930528 C T GABRA4 Missense_Mutation p.R460Q 0.19 tolerated_low_confidence(0.6) benign(0.003) TCGA-CA-6717-01 4 47453639 47453639 G A COMMD8 3'UTR 0.16 TCGA-CA-6717-01 4 47901026 47901026 C T NFXL1 Missense_Mutation p.G313E 0.16 deleterious(0.01) possibly_damaging(0.77) TCGA-CA-6717-01 4 48088568 48088568 G A TXK Missense_Mutation p.R291W 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6717-01 4 48143408 48143408 G A TEC Missense_Mutation p.A500V 0.29 deleterious(0.02) benign(0.081) TCGA-CA-6717-01 4 48169937 48169937 C A TEC Nonsense_Mutation p.E177* 0.20 TCGA-CA-6717-01 4 48487012 48487012 C A SLC10A4 Silent p.I218I 0.11 TCGA-CA-6717-01 4 48604042 48604042 A C FRYL Missense_Mutation p.L344V 0.24 deleterious(0.02) possibly_damaging(0.866) TCGA-CA-6717-01 4 48604048 48604048 A G FRYL Missense_Mutation p.S342P 0.17 deleterious(0.01) benign(0.02) TCGA-CA-6717-01 4 48852032 48852032 A C OCIAD1 Missense_Mutation p.K104Q 0.18 tolerated(0.15) benign(0.263) TCGA-CA-6717-01 4 48887480 48887480 C T OCIAD2 3'UTR 0.09 TCGA-CA-6717-01 4 48996769 48996769 A C CWH43 Missense_Mutation p.E215D 0.17 tolerated(0.18) benign(0.233) TCGA-CA-6717-01 4 49019331 49019331 A G CWH43 Missense_Mutation p.K418E 0.21 tolerated(0.08) benign(0.037) TCGA-CA-6717-01 4 494296 494296 T G PIGG Missense_Mutation p.F89C 0.10 deleterious(0.03) probably_damaging(0.981) TCGA-CA-6717-01 4 52861340 52861340 C T LRRC66 Silent p.S616S 0.14 TCGA-CA-6717-01 4 52869387 52869387 A G LRRC66 Splice_Site p.X222_splice 0.13 TCGA-CA-6717-01 4 53464836 53464836 T G USP46 Missense_Mutation p.K319N 0.17 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 4 53494148 53494148 C A USP46 Missense_Mutation p.K100N 0.12 deleterious(0.03) benign(0.292) TCGA-CA-6717-01 4 54179814 54179814 T G SCFD2 Missense_Mutation p.K375T 0.21 deleterious(0) possibly_damaging(0.838) TCGA-CA-6717-01 4 54231419 54231419 T G SCFD2 Missense_Mutation p.L230F 0.14 deleterious(0.01) benign(0.023) TCGA-CA-6717-01 4 54325726 54325726 T C FIP1L1 3'UTR 0.23 TCGA-CA-6717-01 4 5458539 5458539 G A STK32B Silent p.P224P 0.10 TCGA-CA-6717-01 4 54876296 54876296 A T CHIC2 Missense_Mutation p.F155Y 0.09 tolerated(0.11) benign(0.045) TCGA-CA-6717-01 4 55131024 55131024 A C PDGFRA Intron 0.29 TCGA-CA-6717-01 4 55131122 55131122 A C PDGFRA Missense_Mutation p.K222T 0.23 deleterious(0.01) possibly_damaging(0.635) TCGA-CA-6717-01 4 55141013 55141013 G T PDGFRA Silent p.P553P 0.16 TCGA-CA-6717-01 4 55155218 55155218 G T PDGFRA Missense_Mutation p.K939N 0.12 tolerated(0.06) possibly_damaging(0.802) TCGA-CA-6717-01 4 55565858 55565858 G A KIT Missense_Mutation p.E228K 0.11 tolerated(0.61) benign(0.005) TCGA-CA-6717-01 4 55597552 55597552 A G KIT Missense_Mutation p.T734A 0.16 tolerated(0.16) benign(0.113) TCGA-CA-6717-01 4 55598153 55598153 G A KIT Missense_Mutation p.A784T 0.24 tolerated(0.29) probably_damaging(0.933) TCGA-CA-6717-01 4 55948736 55948736 C T KDR Silent p.P1243P 0.13 TCGA-CA-6717-01 4 55968136 55968136 C T KDR Missense_Mutation p.E732K 0.22 deleterious(0.02) possibly_damaging(0.571) TCGA-CA-6717-01 4 55979637 55979637 C A KDR Missense_Mutation p.K270N 0.19 tolerated(0.49) benign(0.019) TCGA-CA-6717-01 4 55981575 55981575 T C KDR Missense_Mutation p.Y121C 0.13 deleterious(0.02) possibly_damaging(0.738) TCGA-CA-6717-01 4 56277916 56277916 T G TMEM165 Missense_Mutation p.F115V 0.11 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 4 56291563 56291563 G A TMEM165 Missense_Mutation p.V307I 0.15 deleterious(0.01) benign(0.322) TCGA-CA-6717-01 4 5633610 5633610 G T EVC2 Silent p.I540I 0.08 TCGA-CA-6717-01 4 56422793 56422793 T C PDCL2 Silent p.V219V 0.09 TCGA-CA-6717-01 4 5642515 5642515 C T EVC2 Missense_Mutation p.R399Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 4 56756404 56756404 C T EXOC1 Missense_Mutation p.S464L 0.12 deleterious(0.02) benign(0.122) TCGA-CA-6717-01 4 56878113 56878113 C T CEP135 Nonsense_Mutation p.R922* 0.17 TCGA-CA-6717-01 4 57208999 57208999 A G AASDH Splice_Site p.X969_splice 0.11 TCGA-CA-6717-01 4 57215474 57215474 C A AASDH Nonsense_Mutation p.E815* 0.12 TCGA-CA-6717-01 4 57221441 57221441 T G AASDH Missense_Mutation p.K337T 0.09 tolerated(0.06) benign(0.034) TCGA-CA-6717-01 4 57307879 57307879 G A PAICS Missense_Mutation p.E23K 0.08 possibly_damaging(0.729) TCGA-CA-6717-01 4 57354138 57354138 A C SRP72 Missense_Mutation p.I395L 0.21 deleterious(0.04) benign(0.013) TCGA-CA-6717-01 4 57514916 57514916 C A HOPX 3'UTR 0.19 TCGA-CA-6717-01 4 5754604 5754604 A C EVC Missense_Mutation p.K380N 0.23 deleterious(0) probably_damaging(0.959) TCGA-CA-6717-01 4 57777356 57777356 G T REST Missense_Mutation p.K184N 0.20 tolerated(0.05) possibly_damaging(0.677) TCGA-CA-6717-01 4 5806511 5806511 C T EVC Missense_Mutation p.S835L 0.17 tolerated(0.25) benign(0.009) TCGA-CA-6717-01 4 5851130 5851130 A T CRMP1 Missense_Mutation p.L318M 0.21 deleterious(0.02) possibly_damaging(0.805) TCGA-CA-6717-01 4 5961119 5961119 G A C4orf50 Silent p.L746L 0.32 TCGA-CA-6717-01 4 6027937 6027937 C A JAKMIP1 3'UTR 0.11 TCGA-CA-6717-01 4 6052355 6052355 C T JAKMIP1 Missense_Mutation p.E620K 0.13 deleterious(0.02) possibly_damaging(0.729) TCGA-CA-6717-01 4 6055785 6055785 C A JAKMIP1 Nonsense_Mutation p.E600* 0.22 TCGA-CA-6717-01 4 6087348 6087348 C A JAKMIP1 Missense_Mutation p.E211D 0.32 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 4 6107649 6107649 C T JAKMIP1 Missense_Mutation p.E59K 0.28 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 4 62598879 62598879 G T LPHN3 Missense_Mutation p.D268Y 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 62599049 62599049 A C LPHN3 Missense_Mutation p.K324N 0.12 deleterious(0) probably_damaging(0.936) TCGA-CA-6717-01 4 62812781 62812781 G T LPHN3 Nonsense_Mutation p.E789* 0.09 TCGA-CA-6717-01 4 628545 628545 G C PDE6B Missense_Mutation p.G183A 0.17 tolerated(0.15) probably_damaging(1) TCGA-CA-6717-01 4 62897166 62897166 G A LPHN3 Nonsense_Mutation p.W1075* 0.10 TCGA-CA-6717-01 4 62903568 62903568 C A LPHN3 Silent p.G1169G 0.17 TCGA-CA-6717-01 4 62935885 62935885 T C LPHN3 Silent p.G1223G 0.14 TCGA-CA-6717-01 4 62936221 62936221 C A LPHN3 Nonsense_Mutation p.Y1335* 0.08 TCGA-CA-6717-01 4 6335428 6335428 C T PPP2R2C Missense_Mutation p.R274H 0.17 tolerated(0.1) benign(0.014) TCGA-CA-6717-01 4 65145817 65145817 T A TECRL Missense_Mutation p.K355N 0.09 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 4 65275011 65275011 C A TECRL Missense_Mutation p.R20I 0.20 deleterious_low_confidence(0.01) benign(0.165) TCGA-CA-6717-01 4 658005 658005 C T PDE6B Silent p.I708I 0.11 TCGA-CA-6717-01 4 660381 660381 T C PDE6B Missense_Mutation p.F777S 0.12 tolerated(0.11) probably_damaging(0.992) TCGA-CA-6717-01 4 66280141 66280141 C T EPHA5 Silent p.T516T 0.09 TCGA-CA-6717-01 4 66509107 66509107 C A EPHA5 Nonsense_Mutation p.G74* 0.25 TCGA-CA-6717-01 4 6711318 6711318 C T MRFAP1L1 Silent p.E13E 0.18 TCGA-CA-6717-01 4 68449340 68449340 G T STAP1 Missense_Mutation p.K193N 0.12 deleterious(0.03) possibly_damaging(0.491) TCGA-CA-6717-01 4 68472109 68472109 T C STAP1 3'UTR 0.13 TCGA-CA-6717-01 4 68472148 68472148 G A STAP1 3'UTR 0.14 TCGA-CA-6717-01 4 68504796 68504796 G T UBA6 Missense_Mutation p.S534Y 0.11 deleterious(0) possibly_damaging(0.489) TCGA-CA-6717-01 4 68619696 68619696 G T GNRHR Missense_Mutation p.L120I 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 6862658 6862658 G T KIAA0232 Missense_Mutation p.E183D 0.13 deleterious(0.03) benign(0.392) TCGA-CA-6717-01 4 6863322 6863322 G A KIAA0232 Missense_Mutation p.E405K 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 6865452 6865452 G A KIAA0232 Missense_Mutation p.E1115K 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 68700803 68700803 T G TMPRSS11D Missense_Mutation p.N171T 0.13 tolerated(0.11) benign(0.001) TCGA-CA-6717-01 4 68703951 68703951 A C TMPRSS11D Silent p.V138V 0.15 TCGA-CA-6717-01 4 68719799 68719799 C A TMPRSS11D Missense_Mutation p.R79I 0.13 deleterious(0.02) benign(0.055) TCGA-CA-6717-01 4 68725333 68725333 G A TMPRSS11D Silent p.V24V 0.10 TCGA-CA-6717-01 4 68810232 68810232 C T TMPRSS11A Missense_Mutation p.S86N 0.14 tolerated(0.31) benign(0.001) TCGA-CA-6717-01 4 68928657 68928657 A C TMPRSS11F Intron 0.12 TCGA-CA-6717-01 4 6925639 6925639 G T TBC1D14 Nonsense_Mutation p.E175* 0.20 TCGA-CA-6717-01 4 69535626 69535626 A G UGT2B15 Silent p.Y237Y 0.10 TCGA-CA-6717-01 4 69535772 69535772 G T UGT2B15 Missense_Mutation p.L189M 0.17 tolerated(0.07) benign(0.285) TCGA-CA-6717-01 4 69692158 69692158 G A UGT2B10 Missense_Mutation p.D344N 0.10 tolerated(0.07) benign(0.012) TCGA-CA-6717-01 4 69978392 69978392 A C UGT2B7 Missense_Mutation p.K510Q 0.20 deleterious(0.04) benign(0.329) TCGA-CA-6717-01 4 70066067 70066067 G T UGT2B11 3'UTR 0.17 TCGA-CA-6717-01 4 70146861 70146861 A C UGT2B28 Missense_Mutation p.I215L 0.16 tolerated(0.84) benign(0.005) TCGA-CA-6717-01 4 70160591 70160591 G T UGT2B28 3'UTR 0.10 TCGA-CA-6717-01 4 70160595 70160595 G T UGT2B28 3'UTR 0.10 TCGA-CA-6717-01 4 70355204 70355204 C A UGT2B4 Nonsense_Mutation p.E319* 0.10 TCGA-CA-6717-01 4 70355279 70355279 C T UGT2B4 Missense_Mutation p.E294K 0.13 tolerated(0.08) benign(0.169) TCGA-CA-6717-01 4 70360965 70360965 C A UGT2B4 Missense_Mutation p.M205I 0.21 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 4 7043404 7043404 T C CCDC96 Missense_Mutation p.K421R 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 4 70455340 70455340 C A UGT2A1 Missense_Mutation p.R611I 0.10 deleterious(0.04) benign(0.01) TCGA-CA-6717-01 4 7056724 7056724 G T TADA2B Missense_Mutation p.K402N 0.16 deleterious(0.04) benign(0.081) TCGA-CA-6717-01 4 70715228 70715228 G T SULT1E1 Missense_Mutation p.F141L 0.09 deleterious(0.02) benign(0.28) TCGA-CA-6717-01 4 70720005 70720005 G T SULT1E1 Missense_Mutation p.S100Y 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 4 70723241 70723241 A G SULT1E1 Missense_Mutation p.V41A 0.10 deleterious(0) probably_damaging(0.912) TCGA-CA-6717-01 4 70808264 70808264 G A CSN1S1 Missense_Mutation p.R124H 0.21 tolerated(0.72) benign(0.005) TCGA-CA-6717-01 4 71201477 71201477 G A CABS1 Missense_Mutation p.E241K 0.14 tolerated(0.06) benign(0.001) TCGA-CA-6717-01 4 71201938 71201938 G T CABS1 Missense_Mutation p.M394I 0.12 deleterious(0.02) benign(0.008) TCGA-CA-6717-01 4 71250230 71250230 G T SMR3B Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 4 71275230 71275230 C A PROL1 Missense_Mutation p.S62Y 0.10 tolerated_low_confidence(1) benign(0.038) TCGA-CA-6717-01 4 71275857 71275857 T C PROL1 3'UTR 0.21 TCGA-CA-6717-01 4 71459090 71459090 T C AMBN Missense_Mutation p.L21P 0.12 deleterious(0) possibly_damaging(0.626) TCGA-CA-6717-01 4 71554947 71554947 T G UTP3 Missense_Mutation p.W185G 0.13 deleterious(0.01) benign(0.379) TCGA-CA-6717-01 4 71555878 71555878 A C UTP3 3'UTR 0.08 TCGA-CA-6717-01 4 72620736 72620736 A G GC Missense_Mutation p.C394R 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 72620745 72620745 G A GC Missense_Mutation p.L391F 0.08 tolerated(0.11) possibly_damaging(0.889) TCGA-CA-6717-01 4 72897908 72897908 G A NPFFR2 Missense_Mutation p.R97H 0.20 tolerated_low_confidence(0.07) benign(0.001) TCGA-CA-6717-01 4 72994365 72994365 C T NPFFR2 Silent p.V121V 0.08 TCGA-CA-6717-01 4 72994526 72994526 A G NPFFR2 Missense_Mutation p.N175S 0.09 tolerated(0.22) benign(0.084) TCGA-CA-6717-01 4 73185649 73185649 T G ADAMTS3 Silent p.P378P 0.09 TCGA-CA-6717-01 4 73923972 73923972 G A COX18 Silent p.F287F 0.09 TCGA-CA-6717-01 4 73957457 73957457 C T ANKRD17 Missense_Mutation p.G1963D 0.08 benign(0.001) TCGA-CA-6717-01 4 73957502 73957502 C T ANKRD17 Missense_Mutation p.R1948H 0.21 possibly_damaging(0.556) TCGA-CA-6717-01 4 73959869 73959869 G A ANKRD17 Missense_Mutation p.R1752W 0.13 possibly_damaging(0.904) TCGA-CA-6717-01 4 74005854 74005854 C A ANKRD17 Nonsense_Mutation p.E827* 0.10 TCGA-CA-6717-01 4 74270015 74270015 C A ALB 5'UTR 0.22 TCGA-CA-6717-01 4 74275084 74275084 A C ALB Missense_Mutation p.E165D 0.15 deleterious(0.02) possibly_damaging(0.529) TCGA-CA-6717-01 4 74276038 74276038 C A ALB Missense_Mutation p.L209I 0.12 tolerated(0.53) benign(0.027) TCGA-CA-6717-01 4 74281975 74281975 C T ALB Silent p.F398F 0.22 TCGA-CA-6717-01 4 74318132 74318132 C T AFP Silent p.I481I 0.19 TCGA-CA-6717-01 4 74354476 74354476 G A AFM Silent p.T281T 0.26 TCGA-CA-6717-01 4 74608323 74608323 T G IL8 3'UTR 0.32 TCGA-CA-6717-01 4 74853700 74853700 T C PPBP Missense_Mutation p.T41A 0.21 tolerated(0.18) benign(0.001) TCGA-CA-6717-01 4 74853784 74853784 T G PPBP Missense_Mutation p.S13R 0.13 tolerated(0.39) benign(0.012) TCGA-CA-6717-01 4 74863261 74863261 C A CXCL5 3'UTR 0.24 TCGA-CA-6717-01 4 74863306 74863306 C A CXCL5 3'UTR 0.27 TCGA-CA-6717-01 4 75040251 75040251 G A MTHFD2L Missense_Mutation p.E58K 0.24 tolerated(1) benign(0.025) TCGA-CA-6717-01 4 75250454 75250454 C T EREG Nonsense_Mutation p.R147* 0.10 TCGA-CA-6717-01 4 75314886 75314886 C A AREG Missense_Mutation p.P145T 0.13 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 4 75695284 75695284 A G BTC Silent p.P49P 0.09 TCGA-CA-6717-01 4 75937706 75937706 A G PARM1 Missense_Mutation p.T39A 0.10 tolerated(0.18) benign(0.001) TCGA-CA-6717-01 4 76407738 76407738 T C RCHY1 3'UTR 0.11 TCGA-CA-6717-01 4 76452278 76452278 C A THAP6 Silent p.R175R 0.14 TCGA-CA-6717-01 4 76551022 76551022 C A CDKL2 Nonsense_Mutation p.E51* 0.22 TCGA-CA-6717-01 4 76551068 76551068 G T CDKL2 Missense_Mutation p.F35L 0.09 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 4 76572327 76572327 C T G3BP2 Missense_Mutation p.E315K 0.21 tolerated(0.09) benign(0.297) TCGA-CA-6717-01 4 76582860 76582860 G A G3BP2 Missense_Mutation p.R78C 0.28 tolerated(0.08) benign(0.013) TCGA-CA-6717-01 4 76692236 76692236 T C USO1 Silent p.G169G 0.15 TCGA-CA-6717-01 4 76877181 76877181 G A SDAD1 Missense_Mutation p.R655W 0.10 deleterious(0.03) benign(0.052) TCGA-CA-6717-01 4 76882201 76882201 T C SDAD1 Missense_Mutation p.M446V 0.20 deleterious(0.01) benign(0.069) TCGA-CA-6717-01 4 77274276 77274276 C A CCDC158 Missense_Mutation p.K815N 0.24 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 4 77290729 77290729 C A CCDC158 Missense_Mutation p.Q399H 0.37 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 4 77300556 77300556 C A CCDC158 Nonsense_Mutation p.E306* 0.14 TCGA-CA-6717-01 4 7730082 7730082 T G SORCS2 Missense_Mutation p.F959V 0.12 deleterious(0) benign(0.407) TCGA-CA-6717-01 4 77305801 77305801 C A CCDC158 Missense_Mutation p.E102D 0.18 tolerated(0.14) benign(0.003) TCGA-CA-6717-01 4 77324378 77324378 C A CCDC158 5'UTR 0.21 TCGA-CA-6717-01 4 77631357 77631357 C T SHROOM3 Silent p.F124F 0.26 TCGA-CA-6717-01 4 77700037 77700037 C T SHROOM3 Missense_Mutation p.R1900C 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 78532271 78532271 C A CXCL13 3'UTR 0.25 TCGA-CA-6717-01 4 78678020 78678020 G A CNOT6L Silent p.L162L 0.08 TCGA-CA-6717-01 4 78694258 78694258 T C CNOT6L Missense_Mutation p.Q126R 0.08 tolerated(0.25) benign(0.002) TCGA-CA-6717-01 4 79300915 79300915 T G FRAS1 Missense_Mutation p.S1110A 0.11 benign(0.265) TCGA-CA-6717-01 4 79321998 79321998 T C FRAS1 Silent p.A1362A 0.13 TCGA-CA-6717-01 4 79328993 79328993 G A FRAS1 Missense_Mutation p.E1436K 0.20 benign(0.007) TCGA-CA-6717-01 4 79402976 79402976 T G FRAS1 Missense_Mutation p.V2821G 0.15 probably_damaging(0.972) TCGA-CA-6717-01 4 79432576 79432576 C A FRAS1 Missense_Mutation p.A3310D 0.14 probably_damaging(0.91) TCGA-CA-6717-01 4 79503432 79503432 G T ANXA3 Missense_Mutation p.K100N 0.20 tolerated(0.1) possibly_damaging(0.764) TCGA-CA-6717-01 4 79525442 79525442 T G ANXA3 Silent p.T267T 0.14 TCGA-CA-6717-01 4 79808403 79808403 A G BMP2K Missense_Mutation p.D676G 0.13 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 4 80329047 80329047 A C GK2 Nonsense_Mutation p.L103* 0.15 TCGA-CA-6717-01 4 80329207 80329207 C A GK2 Nonsense_Mutation p.E50* 0.13 TCGA-CA-6717-01 4 80905039 80905039 C A ANTXR2 Missense_Mutation p.R391I 0.14 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 4 80990593 80990593 T C ANTXR2 Missense_Mutation p.D98G 0.15 deleterious(0) possibly_damaging(0.765) TCGA-CA-6717-01 4 81122495 81122495 T C PRDM8 Silent p.L91L 0.12 TCGA-CA-6717-01 4 81122655 81122655 G T PRDM8 Missense_Mutation p.R144I 0.12 deleterious(0) probably_damaging(0.944) TCGA-CA-6717-01 4 82058572 82058572 C T PRKG2 Missense_Mutation p.E537K 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 4 8217861 8217861 A C SH3TC1 Missense_Mutation p.N169H 0.23 deleterious(0) possibly_damaging(0.849) TCGA-CA-6717-01 4 83349296 83349296 A C HNRNPDL Missense_Mutation p.L217V 0.14 tolerated(0.57) possibly_damaging(0.88) TCGA-CA-6717-01 4 83350412 83350412 C A HNRNPDL Missense_Mutation p.Q144H 0.08 deleterious(0) possibly_damaging(0.825) TCGA-CA-6717-01 4 83417333 83417333 A C TMEM150C Missense_Mutation p.V84G 0.25 deleterious(0) possibly_damaging(0.609) TCGA-CA-6717-01 4 83785522 83785522 A C SEC31A Missense_Mutation p.F476C 0.11 deleterious(0) possibly_damaging(0.659) TCGA-CA-6717-01 4 83796939 83796939 T G SEC31A Missense_Mutation p.I147L 0.14 deleterious(0) benign(0.039) TCGA-CA-6717-01 4 83796947 83796947 T C SEC31A Missense_Mutation p.E144G 0.12 deleterious(0) possibly_damaging(0.694) TCGA-CA-6717-01 4 83970411 83970411 G T COPS4 Nonsense_Mutation p.E83* 0.18 TCGA-CA-6717-01 4 8412056 8412056 G A ACOX3 Silent p.F190F 0.23 TCGA-CA-6717-01 4 84231960 84231960 G T HPSE Missense_Mutation p.L253I 0.11 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 4 84350853 84350853 A C HELQ Missense_Mutation p.F781C 0.15 deleterious(0) possibly_damaging(0.765) TCGA-CA-6717-01 4 84368105 84368105 A C HELQ Silent p.T425T 0.17 TCGA-CA-6717-01 4 84370084 84370084 G T HELQ Missense_Mutation p.S348Y 0.13 deleterious(0.01) possibly_damaging(0.905) TCGA-CA-6717-01 4 84383922 84383922 G A FAM175A Silent p.S310S 0.21 TCGA-CA-6717-01 4 84457784 84457784 C T AGPAT9 Silent p.G3G 0.26 TCGA-CA-6717-01 4 8467190 8467190 A G TRMT44 Missense_Mutation p.T466A 0.08 deleterious(0.02) possibly_damaging(0.459) TCGA-CA-6717-01 4 85598363 85598363 G T WDFY3 Silent p.L3482L 0.10 TCGA-CA-6717-01 4 85639659 85639659 A C WDFY3 Missense_Mutation p.F2557C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 4 85710984 85710984 G A WDFY3 Silent p.I1188I 0.09 TCGA-CA-6717-01 4 85738731 85738731 A G WDFY3 Silent p.F567F 0.08 TCGA-CA-6717-01 4 8584319 8584319 G T GPR78 Missense_Mutation p.G244C 0.19 tolerated(0.2) benign(0.01) TCGA-CA-6717-01 4 86868 86868 T C Z95704.2 RNA 0.14 TCGA-CA-6717-01 4 86896104 86896104 T C ARHGAP24 Missense_Mutation p.Y266H 0.13 deleterious(0) possibly_damaging(0.669) TCGA-CA-6717-01 4 86915990 86915990 C A ARHGAP24 Missense_Mutation p.L395I 0.09 tolerated(0.16) benign(0.017) TCGA-CA-6717-01 4 86952530 86952530 C A MAPK10 Nonsense_Mutation p.E389* 0.25 TCGA-CA-6717-01 4 87023134 87023134 C T MAPK10 Missense_Mutation p.M159I 0.12 tolerated(0.11) benign(0.143) TCGA-CA-6717-01 4 87672195 87672195 G A PTPN13 Silent p.A1028A 0.12 TCGA-CA-6717-01 4 877202 877202 G A GAK Silent p.I435I 0.20 TCGA-CA-6717-01 4 87724969 87724969 C T PTPN13 Missense_Mutation p.R2210W 0.17 deleterious(0) probably_damaging(0.944) TCGA-CA-6717-01 4 88046235 88046235 A C AFF1 Missense_Mutation p.K838T 0.12 deleterious(0.05) unknown(0) TCGA-CA-6717-01 4 88056734 88056734 T G AFF1 Missense_Mutation p.F1180V 0.14 deleterious(0) unknown(0) TCGA-CA-6717-01 4 88104435 88104435 T G KLHL8 Missense_Mutation p.N291T 0.12 deleterious(0.03) probably_damaging(0.959) TCGA-CA-6717-01 4 88231439 88231439 C A HSD17B13 Missense_Mutation p.M256I 0.09 tolerated(0.21) benign(0.008) TCGA-CA-6717-01 4 88312030 88312030 G T HSD17B11 Missense_Mutation p.L65I 0.13 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 4 88415533 88415533 A C SPARCL1 Missense_Mutation p.F140C 0.18 deleterious(0) possibly_damaging(0.885) TCGA-CA-6717-01 4 88535346 88535346 A C DSPP Missense_Mutation p.E511A 0.10 benign(0.193) TCGA-CA-6717-01 4 88537107 88537107 A G DSPP Missense_Mutation p.D1098G 0.10 unknown(0) TCGA-CA-6717-01 4 88537476 88537476 A G DSPP Missense_Mutation p.D1221G 0.12 unknown(0) TCGA-CA-6717-01 4 88583237 88583237 G T DMP1 Missense_Mutation p.D103Y 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-CA-6717-01 4 88731801 88731801 A C IBSP Missense_Mutation p.D97A 0.19 tolerated(0.06) possibly_damaging(0.596) TCGA-CA-6717-01 4 88767219 88767219 C A MEPE Missense_Mutation p.P400H 0.16 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 4 89013344 89013344 C A ABCG2 3'UTR 0.20 TCGA-CA-6717-01 4 89018648 89018648 G T ABCG2 Missense_Mutation p.S535Y 0.14 tolerated(0.16) benign(0.076) TCGA-CA-6717-01 4 89299988 89299988 C A HERC6 5'Flank 0.31 TCGA-CA-6717-01 4 89363401 89363401 G A HERC6 Missense_Mutation p.R953H 0.08 tolerated(0.08) possibly_damaging(0.484) TCGA-CA-6717-01 4 89442945 89442945 C A PYURF 3'UTR 0.11 TCGA-CA-6717-01 4 89444743 89444743 C T PYURF Missense_Mutation p.A37T 0.11 tolerated(0.3) benign(0.007) TCGA-CA-6717-01 4 89527036 89527036 T G HERC3 Missense_Mutation p.I21S 0.13 tolerated(0.84) benign(0) TCGA-CA-6717-01 4 89571131 89571131 G A HERC3 Missense_Mutation p.D123N 0.27 tolerated(0.25) benign(0.122) TCGA-CA-6717-01 4 89601316 89601316 G T HERC3 Nonsense_Mutation p.E757* 0.24 TCGA-CA-6717-01 4 89744200 89744200 A G FAM13A Intron 0.14 TCGA-CA-6717-01 4 90849102 90849102 T A MMRN1 Missense_Mutation p.F371Y 0.10 tolerated(0.05) probably_damaging(0.965) TCGA-CA-6717-01 4 90856390 90856390 T C MMRN1 Missense_Mutation p.L520P 0.10 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 4 90857133 90857133 G A MMRN1 Missense_Mutation p.D768N 0.16 tolerated(1) benign(0) TCGA-CA-6717-01 4 90857348 90857348 A C MMRN1 Missense_Mutation p.Q839H 0.14 tolerated(0.06) possibly_damaging(0.553) TCGA-CA-6717-01 4 90857834 90857834 G T MMRN1 Missense_Mutation p.Q1001H 0.19 deleterious(0) probably_damaging(0.959) TCGA-CA-6717-01 4 91229499 91229499 A G CCSER1 Missense_Mutation p.I22V 0.09 tolerated(0.43) benign(0.005) TCGA-CA-6717-01 4 93511352 93511352 G T GRID2 Missense_Mutation p.Q53H 0.11 tolerated(0.09) possibly_damaging(0.796) TCGA-CA-6717-01 4 94006340 94006340 C T GRID2 Missense_Mutation p.R147C 0.14 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 4 94032101 94032101 T G GRID2 Silent p.T244T 0.08 TCGA-CA-6717-01 4 94159637 94159637 G A GRID2 Missense_Mutation p.R414Q 0.17 tolerated(0.13) benign(0.07) TCGA-CA-6717-01 4 94376915 94376915 C T GRID2 Nonsense_Mutation p.R550* 0.19 TCGA-CA-6717-01 4 95170833 95170833 C A SMARCAD1 Missense_Mutation p.S245Y 0.11 deleterious(0.04) benign(0.218) TCGA-CA-6717-01 4 95173841 95173841 A C SMARCAD1 Missense_Mutation p.N322H 0.10 tolerated(0.12) benign(0.296) TCGA-CA-6717-01 4 95561461 95561461 T G PDLIM5 Silent p.T410T 0.15 TCGA-CA-6717-01 4 96163632 96163632 G A UNC5C Silent p.C352C 0.19 TCGA-CA-6717-01 4 96171789 96171789 A G UNC5C Silent p.I208I 0.22 TCGA-CA-6717-01 4 96762278 96762278 A C PDHA2 Missense_Mutation p.K326T 0.12 tolerated(0.07) benign(0.155) TCGA-CA-6717-01 4 9784102 9784102 G A DRD5 Missense_Mutation p.R150H 0.16 deleterious(0.05) benign(0.382) TCGA-CA-6717-01 4 98633877 98633877 C A STPG2 Missense_Mutation p.E431D 0.13 tolerated(0.27) benign(0.009) TCGA-CA-6717-01 4 98633879 98633879 C A STPG2 Nonsense_Mutation p.E431* 0.23 TCGA-CA-6717-01 4 98902392 98902392 C A STPG2 Missense_Mutation p.K230N 0.08 tolerated(0.07) possibly_damaging(0.725) TCGA-CA-6717-01 4 99214584 99214584 G A RAP1GDS1 Silent p.K11K 0.10 TCGA-CA-6717-01 4 99273636 99273636 G A RAP1GDS1 Missense_Mutation p.R83Q 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 4 99397408 99397408 A G TSPAN5 Missense_Mutation p.F225L 0.09 tolerated(1) benign(0.262) TCGA-CA-6717-01 4 99403227 99403227 T C TSPAN5 Missense_Mutation p.I127V 0.11 tolerated(0.3) benign(0.304) TCGA-CA-6717-01 4 99993588 99993588 G A ADH5 Nonsense_Mutation p.R369* 0.11 TCGA-CA-6717-01 5 100222053 100222053 A G ST8SIA4 Missense_Mutation p.V166A 0.17 probably_damaging(0.987) TCGA-CA-6717-01 5 100222109 100222109 A G ST8SIA4 Silent p.N147N 0.14 TCGA-CA-6717-01 5 101811421 101811421 C T SLCO6A1 Silent p.E293E 0.20 TCGA-CA-6717-01 5 101813432 101813432 T C SLCO6A1 Silent p.G250G 0.16 TCGA-CA-6717-01 5 102432452 102432452 G T GIN1 Missense_Mutation p.H363N 0.27 tolerated(0.38) benign(0.001) TCGA-CA-6717-01 5 102613664 102613664 C A C5orf30 3'UTR 0.11 TCGA-CA-6717-01 5 102614239 102614239 G T C5orf30 3'UTR 0.12 TCGA-CA-6717-01 5 10378928 10378928 A C MARCH6 Missense_Mutation p.R58S 0.16 deleterious(0) possibly_damaging(0.81) TCGA-CA-6717-01 5 107521847 107521847 A C FBXL17 Missense_Mutation p.N572K 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-CA-6717-01 5 108219163 108219163 T G FER Silent p.V330V 0.09 TCGA-CA-6717-01 5 110096916 110096916 C T SLC25A46 Nonsense_Mutation p.R231* 0.20 TCGA-CA-6717-01 5 110097265 110097265 G A SLC25A46 Missense_Mutation p.R347H 0.26 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 110443075 110443075 A C WDR36 Missense_Mutation p.K477N 0.17 deleterious(0.01) benign(0.305) TCGA-CA-6717-01 5 110710587 110710587 C A CAMK4 Missense_Mutation p.L94I 0.11 tolerated(0.17) probably_damaging(0.983) TCGA-CA-6717-01 5 11110985 11110985 C A CTNND2 Missense_Mutation p.K816N 0.17 deleterious(0.03) benign(0.119) TCGA-CA-6717-01 5 111506035 111506035 C T EPB41L4A Missense_Mutation p.E568K 0.19 deleterious(0.01) benign(0.273) TCGA-CA-6717-01 5 112151262 112151262 G A APC Missense_Mutation p.R302Q 0.16 possibly_damaging(0.778) TCGA-CA-6717-01 5 112154771 112154771 C T APC Nonsense_Mutation p.R348* 0.09 TCGA-CA-6717-01 5 112173705 112173705 G A APC Missense_Mutation p.R805Q 0.13 probably_damaging(0.964) TCGA-CA-6717-01 5 112175466 112175466 C A APC Nonsense_Mutation p.S1392* 0.19 TCGA-CA-6717-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.16 TCGA-CA-6717-01 5 112175997 112175997 A C APC Missense_Mutation p.D1569A 0.11 possibly_damaging(0.692) TCGA-CA-6717-01 5 112177003 112177003 A G APC Silent p.Q1904Q 0.08 TCGA-CA-6717-01 5 112177049 112177049 C T APC Nonsense_Mutation p.R1920* 0.10 TCGA-CA-6717-01 5 112178211 112178211 C T APC Missense_Mutation p.S2307L 0.23 possibly_damaging(0.498) TCGA-CA-6717-01 5 112179737 112179737 C T APC Nonsense_Mutation p.R2816* 0.23 TCGA-CA-6717-01 5 112228416 112228416 C T ZRSR1 Silent p.S360S 0.21 TCGA-CA-6717-01 5 112337364 112337364 A G DCP2 Missense_Mutation p.K267E 0.12 tolerated(0.07) possibly_damaging(0.573) TCGA-CA-6717-01 5 112720772 112720772 T C MCC Missense_Mutation p.E103G 0.19 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-CA-6717-01 5 112769798 112769798 C T TSSK1B Missense_Mutation p.D247N 0.23 tolerated(0.09) possibly_damaging(0.549) TCGA-CA-6717-01 5 112770420 112770420 C T TSSK1B Silent p.A39A 0.24 TCGA-CA-6717-01 5 112871361 112871361 G A YTHDC2 Missense_Mutation p.R323Q 0.12 tolerated(0.24) possibly_damaging(0.504) TCGA-CA-6717-01 5 112876709 112876709 G T YTHDC2 Nonsense_Mutation p.E419* 0.15 TCGA-CA-6717-01 5 113699627 113699627 A G KCNN2 Missense_Mutation p.K171E 0.14 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 5 113822856 113822856 T C KCNN2 Missense_Mutation p.F455S 0.07 deleterious(0) possibly_damaging(0.869) TCGA-CA-6717-01 5 114466327 114466327 T C TRIM36 Silent p.Q598Q 0.10 TCGA-CA-6717-01 5 114552638 114552638 C A PGGT1B Missense_Mutation p.E292D 0.08 tolerated(0.18) benign(0.003) TCGA-CA-6717-01 5 114610927 114610927 C A CCDC112 Nonsense_Mutation p.E302* 0.11 TCGA-CA-6717-01 5 114879108 114879108 T C FEM1C Missense_Mutation p.K28R 0.24 tolerated(0.72) benign(0.001) TCGA-CA-6717-01 5 114956344 114956344 G A TMED7-TICAM2 Nonsense_Mutation p.R76* 0.24 TCGA-CA-6717-01 5 115335595 115335595 G T AQPEP Missense_Mutation p.S504I 0.09 tolerated(0.06) benign(0.392) TCGA-CA-6717-01 5 115336800 115336800 A C AQPEP Missense_Mutation p.T562P 0.25 tolerated(0.22) benign(0.008) TCGA-CA-6717-01 5 115351368 115351368 G T AQPEP Nonsense_Mutation p.E888* 0.09 TCGA-CA-6717-01 5 115803442 115803442 C T SEMA6A Silent p.G577G 0.24 TCGA-CA-6717-01 5 118454522 118454522 T C DMXL1 Silent p.C252C 0.17 TCGA-CA-6717-01 5 118470078 118470078 A C DMXL1 Missense_Mutation p.E790D 0.13 deleterious(0.04) benign(0.005) TCGA-CA-6717-01 5 118485112 118485112 T G DMXL1 Missense_Mutation p.F1197C 0.14 deleterious(0) probably_damaging(0.957) TCGA-CA-6717-01 5 118485540 118485540 C T DMXL1 Missense_Mutation p.R1340W 0.33 deleterious(0) probably_damaging(0.967) TCGA-CA-6717-01 5 118502354 118502354 T G DMXL1 Missense_Mutation p.F1672V 0.18 deleterious(0) possibly_damaging(0.881) TCGA-CA-6717-01 5 118824960 118824960 G T HSD17B4 Missense_Mutation p.E257D 0.08 tolerated(0.19) benign(0.122) TCGA-CA-6717-01 5 121187961 121187961 C A FTMT Missense_Mutation p.F101L 0.13 tolerated(0.08) benign(0.419) TCGA-CA-6717-01 5 121411135 121411135 C T LOX Missense_Mutation p.R281Q 0.07 deleterious(0.02) probably_damaging(0.941) TCGA-CA-6717-01 5 121488258 121488258 T C ZNF474 Silent p.G191G 0.13 TCGA-CA-6717-01 5 121488515 121488515 C T ZNF474 Missense_Mutation p.A277V 0.09 tolerated(0.39) benign(0.003) TCGA-CA-6717-01 5 122137621 122137621 G T SNX2 Nonsense_Mutation p.E150* 0.10 TCGA-CA-6717-01 5 122163131 122163131 C T SNX2 Nonsense_Mutation p.R472* 0.09 TCGA-CA-6717-01 5 122522884 122522884 G A PRDM6 Missense_Mutation p.E593K 0.09 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-CA-6717-01 5 123973508 123973508 T C ZNF608 3'UTR 0.14 TCGA-CA-6717-01 5 123982612 123982612 T C ZNF608 Silent p.K1155K 0.10 TCGA-CA-6717-01 5 124080387 124080387 T G ZNF608 Missense_Mutation p.K99T 0.17 tolerated(0.12) probably_damaging(0.996) TCGA-CA-6717-01 5 1242892 1242892 G A SLC6A18 Missense_Mutation p.V349I 0.10 tolerated(0.28) benign(0.322) TCGA-CA-6717-01 5 125939811 125939811 A C PHAX Missense_Mutation p.K216Q 0.09 deleterious(0.04) possibly_damaging(0.899) TCGA-CA-6717-01 5 125960425 125960425 G A PHAX Silent p.T358T 0.29 TCGA-CA-6717-01 5 126154739 126154739 A G LMNB1 Silent p.Q355Q 0.09 TCGA-CA-6717-01 5 126860340 126860340 T G PRRC1 Missense_Mutation p.F74C 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.855) TCGA-CA-6717-01 5 126860493 126860494 - A PRRC1 Frame_Shift_Ins p.S126Ffs*15 0.11 TCGA-CA-6717-01 5 126883627 126883627 T G PRRC1 Intron 0.12 TCGA-CA-6717-01 5 127450355 127450355 A C SLC12A2 Missense_Mutation p.N344H 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 127469881 127469881 G T SLC12A2 Nonsense_Mutation p.E405* 0.17 TCGA-CA-6717-01 5 127477557 127477557 A G SLC12A2 Missense_Mutation p.N553D 0.09 deleterious(0.02) possibly_damaging(0.852) TCGA-CA-6717-01 5 127516640 127516640 G T SLC12A2 Missense_Mutation p.V1056L 0.13 deleterious(0.01) possibly_damaging(0.694) TCGA-CA-6717-01 5 127595043 127595043 G T FBN2 3'UTR 0.21 TCGA-CA-6717-01 5 127641604 127641604 G A FBN2 Missense_Mutation p.A1820V 0.16 tolerated(0.06) possibly_damaging(0.461) TCGA-CA-6717-01 5 127666351 127666351 C A FBN2 Missense_Mutation p.S1420I 0.09 deleterious(0.02) benign(0.3) TCGA-CA-6717-01 5 127668673 127668673 G T FBN2 Missense_Mutation p.L1385M 0.08 tolerated(0.07) probably_damaging(0.936) TCGA-CA-6717-01 5 127671245 127671245 T C FBN2 Missense_Mutation p.N1250S 0.12 tolerated(0.06) benign(0.186) TCGA-CA-6717-01 5 127713526 127713526 G A FBN2 Nonsense_Mutation p.R590* 0.10 TCGA-CA-6717-01 5 128302010 128302010 C A SLC27A6 Missense_Mutation p.F60L 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 128326061 128326061 T G SLC27A6 Missense_Mutation p.F291L 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 128351647 128351647 G T SLC27A6 Nonsense_Mutation p.E347* 0.15 TCGA-CA-6717-01 5 128440938 128440938 C A ISOC1 Missense_Mutation p.L164I 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 128441029 128441029 C T ISOC1 Missense_Mutation p.A194V 0.10 deleterious(0.04) benign(0.233) TCGA-CA-6717-01 5 130841121 130841121 A C RAPGEF6 Missense_Mutation p.I346S 0.18 deleterious(0) probably_damaging(0.971) TCGA-CA-6717-01 5 131007333 131007333 C A FNIP1 Missense_Mutation p.R935I 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 131014852 131014852 G T FNIP1 Missense_Mutation p.L407I 0.22 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 5 131055024 131055024 T G FNIP1 Missense_Mutation p.K147N 0.07 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 131630927 131630927 T C SLC22A4 Intron 0.11 TCGA-CA-6717-01 5 131796275 131796275 T G C5orf56 Missense_Mutation p.L37R 0.14 tolerated_low_confidence(0.06) possibly_damaging(0.883) TCGA-CA-6717-01 5 131825176 131825176 C T IRF1 Splice_Site 0.24 TCGA-CA-6717-01 5 131893034 131893034 G T RAD50 Missense_Mutation p.K6N 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6717-01 5 131924513 131924513 T C RAD50 Missense_Mutation p.F396L 0.23 tolerated(0.14) benign(0.118) TCGA-CA-6717-01 5 131926965 131926965 A G RAD50 Missense_Mutation p.K501R 0.11 tolerated(0.47) benign(0.008) TCGA-CA-6717-01 5 131953803 131953803 G T RAD50 Missense_Mutation p.R1069I 0.24 deleterious(0.02) benign(0.169) TCGA-CA-6717-01 5 132015497 132015497 C T IL4 Missense_Mutation p.A92V 0.15 tolerated(0.36) probably_damaging(0.951) TCGA-CA-6717-01 5 132070000 132070000 C A KIF3A Missense_Mutation p.K59N 0.25 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 5 132223235 132223235 C A AFF4 Missense_Mutation p.D995Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 5 132238134 132238134 G A AFF4 Missense_Mutation p.S378F 0.23 deleterious(0.01) benign(0.018) TCGA-CA-6717-01 5 132412397 132412397 G A HSPA4 Missense_Mutation p.V239M 0.08 tolerated(0.11) benign(0.026) TCGA-CA-6717-01 5 132422479 132422479 A C HSPA4 Missense_Mutation p.K305T 0.28 tolerated(0.08) benign(0.369) TCGA-CA-6717-01 5 132535346 132535346 A C FSTL4 Missense_Mutation p.F657C 0.09 deleterious(0) probably_damaging(0.954) TCGA-CA-6717-01 5 132561425 132561425 G A FSTL4 Missense_Mutation p.P368S 0.10 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 5 133326744 133326744 C A VDAC1 Missense_Mutation p.E73D 0.14 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 5 133473798 133473798 G A TCF7 Missense_Mutation p.E164K 0.12 deleterious(0.03) benign(0.254) TCGA-CA-6717-01 5 133494196 133494196 G A SKP1 Missense_Mutation p.R136C 0.15 deleterious(0.04) benign(0.009) TCGA-CA-6717-01 5 134060716 134060716 G T SEC24A Missense_Mutation p.D1072Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 134102657 134102657 G A DDX46 Missense_Mutation p.R86Q 0.15 tolerated(0.44) unknown(0) TCGA-CA-6717-01 5 134109505 134109505 C T DDX46 Silent p.I189I 0.09 TCGA-CA-6717-01 5 134118679 134118679 G T DDX46 Nonsense_Mutation p.G364* 0.13 TCGA-CA-6717-01 5 134131695 134131695 A G DDX46 Silent p.E603E 0.11 TCGA-CA-6717-01 5 134153199 134153199 A C DDX46 Missense_Mutation p.Q875P 0.28 tolerated(0.15) benign(0.04) TCGA-CA-6717-01 5 134229342 134229342 G T TXNDC15 Missense_Mutation p.S251I 0.13 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 5 134678971 134678971 A C H2AFY Missense_Mutation p.F311C 0.17 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 5 134782297 134782297 C T C5orf20 Missense_Mutation p.E168K 0.11 tolerated_low_confidence(0.73) benign(0) TCGA-CA-6717-01 5 135178110 135178110 G C SLC25A48 Missense_Mutation p.A18P 0.22 tolerated(0.06) probably_damaging(0.972) TCGA-CA-6717-01 5 135276184 135276184 T G FBXL21 RNA 0.22 TCGA-CA-6717-01 5 135398985 135398985 T G TGFBI 3'UTR 0.11 TCGA-CA-6717-01 5 135549126 135549126 A C TRPC7 Missense_Mutation p.I862M 0.23 deleterious_low_confidence(0.01) benign(0.216) TCGA-CA-6717-01 5 135561780 135561780 G T TRPC7 Missense_Mutation p.S735Y 0.18 tolerated(0.8) benign(0.091) TCGA-CA-6717-01 5 136403495 136403495 A G SPOCK1 Silent p.C166C 0.11 TCGA-CA-6717-01 5 13719002 13719002 C A DNAH5 Missense_Mutation p.R4163I 0.16 possibly_damaging(0.639) TCGA-CA-6717-01 5 137206362 137206362 A C MYOT Missense_Mutation p.K8Q 0.23 deleterious(0.02) probably_damaging(0.982) TCGA-CA-6717-01 5 137206383 137206383 A C MYOT Missense_Mutation p.N15H 0.21 deleterious(0.04) probably_damaging(0.979) TCGA-CA-6717-01 5 137211686 137211686 A G MYOT Silent p.G175G 0.20 TCGA-CA-6717-01 5 137219162 137219162 G T MYOT Missense_Mutation p.E302D 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 5 137221843 137221843 A G MYOT Silent p.P377P 0.07 TCGA-CA-6717-01 5 137221896 137221896 G A MYOT Missense_Mutation p.R395Q 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 137222922 137222922 C T MYOT Missense_Mutation p.P449S 0.12 deleterious(0.04) benign(0.071) TCGA-CA-6717-01 5 13737536 13737536 T G DNAH5 Silent p.L3760L 0.12 TCGA-CA-6717-01 5 137527612 137527612 C T CDC23 Missense_Mutation p.R434H 0.29 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 5 137542096 137542097 - T CDC23 Intron 0.24 TCGA-CA-6717-01 5 137622189 137622189 C T CDC25C Missense_Mutation p.R386Q 0.17 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 5 13770908 13770908 A G DNAH5 Silent p.Y3185Y 0.09 TCGA-CA-6717-01 5 137726875 137726875 C A KDM3B Missense_Mutation p.D518E 0.10 tolerated_low_confidence(0.36) benign(0.011) TCGA-CA-6717-01 5 137760003 137760003 C A KDM3B Silent p.I1404I 0.10 TCGA-CA-6717-01 5 137780470 137780470 C T REEP2 Nonsense_Mutation p.R111* 0.26 TCGA-CA-6717-01 5 138240116 138240116 G A CTNNA1 Missense_Mutation p.A459T 0.08 tolerated(1) benign(0.001) TCGA-CA-6717-01 5 138643764 138643764 A C MATR3 Missense_Mutation p.E220D 0.15 tolerated(0.21) probably_damaging(0.931) TCGA-CA-6717-01 5 13865789 13865789 T G DNAH5 Missense_Mutation p.E1448A 0.09 possibly_damaging(0.621) TCGA-CA-6717-01 5 138713719 138713719 G T SLC23A1 Missense_Mutation p.F470L 0.14 deleterious(0.04) benign(0.344) TCGA-CA-6717-01 5 138716047 138716047 A G SLC23A1 Missense_Mutation p.V170A 0.21 deleterious(0.02) benign(0.159) TCGA-CA-6717-01 5 13882923 13882923 T C DNAH5 Missense_Mutation p.K1059R 0.10 benign(0.292) TCGA-CA-6717-01 5 13911506 13911506 T G DNAH5 Missense_Mutation p.N545H 0.15 benign(0.068) TCGA-CA-6717-01 5 139192937 139192937 G A PSD2 Missense_Mutation p.A139T 0.20 deleterious(0.04) benign(0.004) TCGA-CA-6717-01 5 139215343 139215343 A C PSD2 Missense_Mutation p.E465D 0.22 deleterious(0.01) possibly_damaging(0.816) TCGA-CA-6717-01 5 13922289 13922289 C T DNAH5 Missense_Mutation p.R196H 0.26 possibly_damaging(0.623) TCGA-CA-6717-01 5 139495117 139495117 T C PURA 3'UTR 0.09 TCGA-CA-6717-01 5 139505611 139505611 T G IGIP 5'UTR 0.17 TCGA-CA-6717-01 5 139506090 139506090 C T IGIP 5'UTR 0.09 TCGA-CA-6717-01 5 139506788 139506788 T G IGIP 5'UTR 0.14 TCGA-CA-6717-01 5 139507765 139507765 T G IGIP 5'UTR 0.11 TCGA-CA-6717-01 5 139742515 139742515 C T SLC4A9 Missense_Mutation p.R300C 0.23 deleterious(0.03) benign(0.036) TCGA-CA-6717-01 5 139825375 139825375 T C ANKHD1 Missense_Mutation p.V321A 0.11 unknown(0) TCGA-CA-6717-01 5 139889279 139889279 G T ANKHD1 Missense_Mutation p.V1275F 0.18 possibly_damaging(0.727) TCGA-CA-6717-01 5 139903781 139903781 C T ANKHD1 Missense_Mutation p.S1483L 0.17 benign(0.32) TCGA-CA-6717-01 5 139930345 139930345 C A SRA1 Missense_Mutation p.E217D 0.21 deleterious(0.04) benign(0.389) TCGA-CA-6717-01 5 140073220 140073220 G T HARS2 Missense_Mutation p.E51D 0.18 tolerated(0.43) benign(0.006) TCGA-CA-6717-01 5 140085420 140085420 C A ZMAT2 3'UTR 0.22 TCGA-CA-6717-01 5 140174815 140174815 G A PCDHA2 Missense_Mutation p.R89Q 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.874) TCGA-CA-6717-01 5 140177009 140177009 T C PCDHA2 Intron 0.08 TCGA-CA-6717-01 5 140182127 140182127 A G PCDHA3 Missense_Mutation p.N449D 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CA-6717-01 5 140203464 140203464 G A PCDHA5 Missense_Mutation p.A702T 0.12 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-CA-6717-01 5 140203641 140203641 G A PCDHA5 Missense_Mutation p.E761K 0.22 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-CA-6717-01 5 140208066 140208066 G A PCDHA6 Silent p.P130P 0.14 TCGA-CA-6717-01 5 140208715 140208715 G A PCDHA6 Missense_Mutation p.V347I 0.09 tolerated_low_confidence(0.13) benign(0.021) TCGA-CA-6717-01 5 140214443 140214443 G A PCDHA7 Missense_Mutation p.D159N 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CA-6717-01 5 140214938 140214938 G A PCDHA7 Missense_Mutation p.D324N 0.14 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CA-6717-01 5 140221648 140221648 G A PCDHA8 Missense_Mutation p.E248K 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-CA-6717-01 5 140223329 140223329 A C PCDHA8 Intron 0.09 TCGA-CA-6717-01 5 140231544 140231544 T C PCDHA9 Intron 0.20 TCGA-CA-6717-01 5 140232775 140232775 C A PCDHA9 Intron 0.14 TCGA-CA-6717-01 5 140233344 140233344 A G PCDHA9 Intron 0.18 TCGA-CA-6717-01 5 140233459 140233459 T C PCDHA9 Intron 0.11 TCGA-CA-6717-01 5 140235839 140235839 G T PCDHA10 Missense_Mutation p.R69I 0.12 deleterious_low_confidence(0) benign(0.011) TCGA-CA-6717-01 5 140236530 140236530 A G PCDHA10 Silent p.G299G 0.15 TCGA-CA-6717-01 5 140255959 140255959 A - PCDHA12 Frame_Shift_Del p.I302Lfs*42 0.14 TCGA-CA-6717-01 5 140256021 140256021 G A PCDHA12 Missense_Mutation p.A322T 0.10 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-CA-6717-01 5 140256956 140256956 G A PCDHA12 Silent p.T633T 0.10 TCGA-CA-6717-01 5 140262469 140262469 C A PCDHA13 Missense_Mutation p.Q206K 0.13 deleterious_low_confidence(0.01) benign(0.083) TCGA-CA-6717-01 5 140308473 140308473 G T PCDHAC1 Missense_Mutation p.D666Y 0.28 deleterious(0) benign(0.421) TCGA-CA-6717-01 5 140308812 140308812 G A PCDHAC1 Missense_Mutation p.D779N 0.13 tolerated(0.08) benign(0.002) TCGA-CA-6717-01 5 140309306 140309306 A G PCDHAC1 Intron 0.26 TCGA-CA-6717-01 5 140346879 140346879 C T PCDHAC2 Silent p.D176D 0.09 TCGA-CA-6717-01 5 140389300 140389300 A G PCDHAC1 Silent p.K890K 0.18 TCGA-CA-6717-01 5 140432136 140432136 C G PCDHB1 Missense_Mutation p.P361A 0.09 tolerated(0.1) benign(0.009) TCGA-CA-6717-01 5 140432601 140432601 G A PCDHB1 Missense_Mutation p.A516T 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 140433206 140433206 G T PCDHB1 Missense_Mutation p.K717N 0.20 deleterious(0) possibly_damaging(0.783) TCGA-CA-6717-01 5 140474402 140474402 G A PCDHB2 Missense_Mutation p.V10I 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-CA-6717-01 5 140475308 140475308 G A PCDHB2 Missense_Mutation p.E312K 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-CA-6717-01 5 140502357 140502357 A G PCDHB4 Silent p.P259P 0.08 TCGA-CA-6717-01 5 140502410 140502410 C A PCDHB4 Missense_Mutation p.S277Y 0.17 deleterious(0.02) probably_damaging(0.936) TCGA-CA-6717-01 5 140502497 140502497 T C PCDHB4 Missense_Mutation p.L306S 0.24 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 5 140515585 140515585 A C PCDHB5 Missense_Mutation p.K190T 0.24 deleterious_low_confidence(0.01) benign(0.193) TCGA-CA-6717-01 5 140530394 140530394 G A PCDHB6 Missense_Mutation p.E186K 0.11 deleterious(0.04) benign(0.008) TCGA-CA-6717-01 5 140553916 140553916 C T PCDHB7 Silent p.L500L 0.11 TCGA-CA-6717-01 5 140554630 140554630 C T PCDHB7 Silent p.S738S 0.12 TCGA-CA-6717-01 5 140554978 140554978 A G PCDHB7 3'UTR 0.14 TCGA-CA-6717-01 5 140555033 140555033 T C PCDHB7 3'UTR 0.23 TCGA-CA-6717-01 5 140555346 140555346 G T PCDHB7 3'UTR 0.10 TCGA-CA-6717-01 5 140555757 140555757 T G PCDHB7 3'UTR 0.22 TCGA-CA-6717-01 5 140557998 140557998 A C PCDHB8 Missense_Mutation p.N128T 0.10 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-CA-6717-01 5 140563038 140563038 C T PCDHB16 Nonsense_Mutation p.R302* 0.11 TCGA-CA-6717-01 5 140564516 140564516 A G PCDHB16 3'UTR 0.08 TCGA-CA-6717-01 5 140565317 140565317 A G PCDHB16 3'UTR 0.32 TCGA-CA-6717-01 5 140565532 140565532 C T PCDHB16 3'UTR 0.12 TCGA-CA-6717-01 5 140572936 140572936 T G PCDHB10 Missense_Mutation p.S271A 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-CA-6717-01 5 140574512 140574512 G T PCDHB10 Missense_Mutation p.G796V 0.13 tolerated_low_confidence(0.23) benign(0.043) TCGA-CA-6717-01 5 140574951 140574951 C A PCDHB10 3'UTR 0.14 TCGA-CA-6717-01 5 140588882 140588882 G A PCDHB12 Missense_Mutation p.E135K 0.11 deleterious_low_confidence(0.02) benign(0.174) TCGA-CA-6717-01 5 140596624 140596624 G A PCDHB13 3'UTR 0.15 TCGA-CA-6717-01 5 140596971 140596971 G T PCDHB13 3'UTR 0.16 TCGA-CA-6717-01 5 140603910 140603910 C T PCDHB14 Missense_Mutation p.S278F 0.20 tolerated_low_confidence(0.06) possibly_damaging(0.836) TCGA-CA-6717-01 5 140605371 140605371 A C PCDHB14 Missense_Mutation p.K765T 0.16 deleterious_low_confidence(0) benign(0.33) TCGA-CA-6717-01 5 140625987 140625987 C A PCDHB15 Missense_Mutation p.L281I 0.15 deleterious_low_confidence(0.04) benign(0.072) TCGA-CA-6717-01 5 140626050 140626050 C T PCDHB15 Nonsense_Mutation p.R302* 0.18 TCGA-CA-6717-01 5 140626087 140626087 C T PCDHB15 Missense_Mutation p.S314L 0.17 deleterious_low_confidence(0.04) benign(0.043) TCGA-CA-6717-01 5 140698938 140698938 T G TAF7 Missense_Mutation p.D225A 0.11 deleterious(0.01) possibly_damaging(0.662) TCGA-CA-6717-01 5 140710357 140710357 C T PCDHGA1 Missense_Mutation p.P36S 0.09 tolerated_low_confidence(0.09) benign(0.081) TCGA-CA-6717-01 5 140712400 140712400 C T PCDHGA1 Missense_Mutation p.R717W 0.11 tolerated_low_confidence(0.1) benign(0.082) TCGA-CA-6717-01 5 140718644 140718644 C T PCDHGA2 Missense_Mutation p.R36W 0.28 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-CA-6717-01 5 140730217 140730217 C T PCDHGB1 Silent p.F130F 0.09 TCGA-CA-6717-01 5 140730443 140730443 C T PCDHGB1 Missense_Mutation p.R206C 0.08 deleterious(0.02) possibly_damaging(0.901) TCGA-CA-6717-01 5 140731541 140731541 G A PCDHGB1 Missense_Mutation p.D572N 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 140735052 140735052 C A PCDHGA4 Silent p.L95L 0.19 TCGA-CA-6717-01 5 140736823 140736823 G A PCDHGA4 Missense_Mutation p.D686N 0.32 tolerated_low_confidence(0.09) benign(0.005) TCGA-CA-6717-01 5 140750458 140750458 C T PCDHGB3 Missense_Mutation p.S166L 0.12 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 5 140752300 140752300 T C PCDHGB3 Missense_Mutation p.L780P 0.09 tolerated(0.14) benign(0.093) TCGA-CA-6717-01 5 140755522 140755522 C T PCDHGA6 Silent p.G624G 0.31 TCGA-CA-6717-01 5 140762865 140762865 C A PCDHGA7 Missense_Mutation p.F133L 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6717-01 5 140769030 140769030 G A PCDHGB4 Missense_Mutation p.E527K 0.31 tolerated(0.07) benign(0.358) TCGA-CA-6717-01 5 140773261 140773261 T C PCDHGA8 Missense_Mutation p.L294P 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6717-01 5 140797441 140797441 C T PCDHGB7 Silent p.C5C 0.17 TCGA-CA-6717-01 5 140803197 140803197 T G PCDHGA11 Missense_Mutation p.I801M 0.10 tolerated_low_confidence(0.22) benign(0.017) TCGA-CA-6717-01 5 140810878 140810878 T C PCDHGA12 Silent p.N184N 0.10 TCGA-CA-6717-01 5 140869196 140869196 C A PCDHGC5 Missense_Mutation p.S130Y 0.21 deleterious(0.03) probably_damaging(0.968) TCGA-CA-6717-01 5 140903796 140903796 T G DIAPH1 Missense_Mutation p.E1192A 0.14 possibly_damaging(0.54) TCGA-CA-6717-01 5 141316762 141316762 G T KIAA0141 Splice_Site p.X384_splice 0.12 TCGA-CA-6717-01 5 141335016 141335016 C T PCDH12 Missense_Mutation p.E801K 0.12 tolerated(0.16) benign(0.357) TCGA-CA-6717-01 5 141336302 141336302 A C PCDH12 Missense_Mutation p.F372C 0.13 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 5 141381655 141381655 T C GNPDA1 Missense_Mutation p.Y270C 0.10 tolerated_low_confidence(0.19) benign(0.002) TCGA-CA-6717-01 5 142661418 142661418 C T NR3C1 3'UTR 0.16 TCGA-CA-6717-01 5 14374408 14374408 C A TRIO Missense_Mutation p.P1096Q 0.13 probably_damaging(0.998) TCGA-CA-6717-01 5 14401121 14401121 T C TRIO Missense_Mutation p.F1555S 0.10 probably_damaging(0.997) TCGA-CA-6717-01 5 14485345 14485345 T A TRIO Missense_Mutation p.N2275K 0.18 benign(0) TCGA-CA-6717-01 5 145483830 145483830 A G PLAC8L1 Silent p.L15L 0.10 TCGA-CA-6717-01 5 145537024 145537024 T C LARS Missense_Mutation p.Y336C 0.26 deleterious(0.01) benign(0.21) TCGA-CA-6717-01 5 145603076 145603076 G T RBM27 Nonsense_Mutation p.E97* 0.17 TCGA-CA-6717-01 5 145603085 145603085 G T RBM27 Nonsense_Mutation p.E100* 0.19 TCGA-CA-6717-01 5 145610236 145610236 G A RBM27 Silent p.S202S 0.26 TCGA-CA-6717-01 5 145665683 145665683 A C RBM27 3'UTR 0.26 TCGA-CA-6717-01 5 145872600 145872600 A T TCERG1 Nonsense_Mutation p.R744* 0.09 TCGA-CA-6717-01 5 146773512 146773512 C T DPYSL3 3'UTR 0.21 TCGA-CA-6717-01 5 146971248 146971248 C A JAKMIP2 Missense_Mutation p.S805I 0.27 tolerated_low_confidence(0.25) benign(0.008) TCGA-CA-6717-01 5 147028030 147028030 C T JAKMIP2 Missense_Mutation p.R282Q 0.12 deleterious(0.04) probably_damaging(0.964) TCGA-CA-6717-01 5 147051407 147051407 C A JAKMIP2 5'UTR 0.10 TCGA-CA-6717-01 5 1474767 1474767 G A LPCAT1 Silent p.F311F 0.21 TCGA-CA-6717-01 5 147477512 147477512 A G SPINK5 Missense_Mutation p.D322G 0.12 deleterious(0) probably_damaging(0.923) TCGA-CA-6717-01 5 147504332 147504332 C T SPINK5 Nonsense_Mutation p.R891* 0.08 TCGA-CA-6717-01 5 147554930 147554930 G T SPINK14 Missense_Mutation p.R88I 0.11 deleterious(0.01) benign(0.309) TCGA-CA-6717-01 5 147593525 147593525 A G SPINK6 Missense_Mutation p.N45S 0.27 deleterious(0.03) benign(0.422) TCGA-CA-6717-01 5 147594482 147594482 A G SPINK6 Missense_Mutation p.K71R 0.09 tolerated(0.09) possibly_damaging(0.465) TCGA-CA-6717-01 5 147661777 147661777 C A SPINK13 Missense_Mutation p.F73L 0.19 tolerated(0.08) benign(0.111) TCGA-CA-6717-01 5 147821658 147821658 T G FBXO38 Missense_Mutation p.F1097C 0.15 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 5 147856297 147856297 G T HTR4 3'Flank 0.09 TCGA-CA-6717-01 5 148206718 148206718 T G ADRB2 Missense_Mutation p.F108L 0.12 tolerated(0.71) benign(0.027) TCGA-CA-6717-01 5 148207511 148207511 G T ADRB2 Nonsense_Mutation p.E373* 0.18 TCGA-CA-6717-01 5 148207819 148207819 T C ADRB2 3'UTR 0.11 TCGA-CA-6717-01 5 148730548 148730548 T C GRPEL2 Silent p.I127I 0.13 TCGA-CA-6717-01 5 148810295 148810295 T G MIR145 RNA 0.19 TCGA-CA-6717-01 5 149360078 149360078 A C SLC26A2 Missense_Mutation p.S308R 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 149384546 149384546 A C HMGXB3 Missense_Mutation p.K44T 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 149574425 149574425 C T SLC6A7 Silent p.G56G 0.11 TCGA-CA-6717-01 5 149767470 149767470 T G TCOF1 Missense_Mutation p.I955M 0.10 deleterious(0) possibly_damaging(0.868) TCGA-CA-6717-01 5 149997972 149997972 G A SYNPO Missense_Mutation p.E15K 0.17 tolerated_low_confidence(0.11) benign(0.017) TCGA-CA-6717-01 5 150277630 150277630 T C ZNF300 Missense_Mutation p.R103G 0.08 tolerated(0.4) benign(0.085) TCGA-CA-6717-01 5 150413182 150413182 C T TNIP1 Missense_Mutation p.R589H 0.26 tolerated_low_confidence(0.74) benign(0.009) TCGA-CA-6717-01 5 150415226 150415226 G A TNIP1 Missense_Mutation p.R480C 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 150512679 150512679 G A ANXA6 Missense_Mutation p.R206C 0.23 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 5 150663721 150663721 A G SLC36A3 Silent p.V327V 0.13 TCGA-CA-6717-01 5 150667992 150667992 G A SLC36A3 Silent p.G189G 0.23 TCGA-CA-6717-01 5 150901155 150901155 G T FAT2 Missense_Mutation p.H3667N 0.15 possibly_damaging(0.71) TCGA-CA-6717-01 5 150901629 150901629 G A FAT2 Missense_Mutation p.P3509S 0.36 probably_damaging(1) TCGA-CA-6717-01 5 150921921 150921921 C T FAT2 Missense_Mutation p.E2923K 0.11 probably_damaging(0.914) TCGA-CA-6717-01 5 150931083 150931083 G A FAT2 Missense_Mutation p.S1414L 0.26 benign(0.066) TCGA-CA-6717-01 5 151175060 151175060 G A G3BP1 Missense_Mutation p.E155K 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-CA-6717-01 5 151179562 151179562 G A G3BP1 Splice_Site p.X319_splice 0.15 TCGA-CA-6717-01 5 151304089 151304089 G A GLRA1 Nonsense_Mutation p.R8* 0.14 TCGA-CA-6717-01 5 151771760 151771760 T A NMUR2 Nonsense_Mutation p.K414* 0.19 TCGA-CA-6717-01 5 151771974 151771974 G T NMUR2 Silent p.I342I 0.14 TCGA-CA-6717-01 5 153054082 153054082 A G GRIA1 Missense_Mutation p.N251S 0.11 tolerated(0.81) benign(0) TCGA-CA-6717-01 5 153190693 153190693 C T GRIA1 Missense_Mutation p.R887W 0.10 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-CA-6717-01 5 153434400 153434400 C T MFAP3 3'UTR 0.12 TCGA-CA-6717-01 5 153434868 153434868 T G MFAP3 3'UTR 0.17 TCGA-CA-6717-01 5 153435110 153435110 T C MFAP3 3'UTR 0.20 TCGA-CA-6717-01 5 153435900 153435900 T C MFAP3 3'UTR 0.16 TCGA-CA-6717-01 5 153436384 153436384 C A MFAP3 3'UTR 0.17 TCGA-CA-6717-01 5 153436625 153436625 T G MFAP3 3'UTR 0.12 TCGA-CA-6717-01 5 153436933 153436933 T G MFAP3 3'UTR 0.20 TCGA-CA-6717-01 5 153726732 153726732 T C GALNT10 Intron 0.11 TCGA-CA-6717-01 5 153760081 153760081 C T GALNT10 Silent p.Y276Y 0.19 TCGA-CA-6717-01 5 154181566 154181566 G T LARP1 Splice_Site p.X496_splice 0.11 TCGA-CA-6717-01 5 154244798 154244798 G A CNOT8 Missense_Mutation p.R55H 0.18 deleterious(0) possibly_damaging(0.888) TCGA-CA-6717-01 5 154282170 154282170 A G GEMIN5 Missense_Mutation p.L932P 0.14 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 5 154287276 154287276 G T GEMIN5 Nonsense_Mutation p.S757* 0.22 TCGA-CA-6717-01 5 154315505 154315505 G T GEMIN5 Missense_Mutation p.F135L 0.26 tolerated(0.05) benign(0.001) TCGA-CA-6717-01 5 154394051 154394051 G A KIF4B Missense_Mutation p.R211Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 5 154395424 154395424 G T KIF4B Missense_Mutation p.D669Y 0.07 deleterious(0) probably_damaging(0.928) TCGA-CA-6717-01 5 154396162 154396162 G T KIF4B Nonsense_Mutation p.E915* 0.09 TCGA-CA-6717-01 5 156346507 156346507 C T TIMD4 Silent p.Q366Q 0.23 TCGA-CA-6717-01 5 156590113 156590113 T C FAM71B Missense_Mutation p.E388G 0.16 tolerated(0.26) benign(0.004) TCGA-CA-6717-01 5 156590161 156590161 A G FAM71B Missense_Mutation p.L372S 0.20 tolerated(0.26) benign(0.005) TCGA-CA-6717-01 5 156593132 156593132 A C FAM71B Silent p.S16S 0.24 TCGA-CA-6717-01 5 156671417 156671417 C A ITK Missense_Mutation p.L460M 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-CA-6717-01 5 156747679 156747679 C T CYFIP2 Nonsense_Mutation p.R488* 0.32 TCGA-CA-6717-01 5 156770047 156770047 C T FNDC9 Silent p.P166P 0.17 TCGA-CA-6717-01 5 156770426 156770426 A G FNDC9 Missense_Mutation p.F40S 0.11 deleterious(0) probably_damaging(0.973) TCGA-CA-6717-01 5 156899957 156899957 A C NIPAL4 Missense_Mutation p.I464L 0.40 tolerated_low_confidence(0.06) benign(0.049) TCGA-CA-6717-01 5 156907932 156907932 A T ADAM19 3'UTR 0.20 TCGA-CA-6717-01 5 157106986 157106986 C T C5orf52 Silent p.F153F 0.10 TCGA-CA-6717-01 5 157214831 157214831 T C CLINT1 Silent p.G585G 0.12 TCGA-CA-6717-01 5 157236711 157236711 T C CLINT1 Missense_Mutation p.K207R 0.08 deleterious(0.01) benign(0.383) TCGA-CA-6717-01 5 158526496 158526497 - T EBF1 5'UTR 0.11 TCGA-CA-6717-01 5 158603742 158603742 T G RNF145 Missense_Mutation p.K203N 0.11 tolerated(0.51) benign(0.01) TCGA-CA-6717-01 5 158696002 158696002 G A UBLCP1 Missense_Mutation p.D27N 0.11 tolerated(0.21) possibly_damaging(0.832) TCGA-CA-6717-01 5 159344092 159344092 C T ADRA1B Silent p.I60I 0.08 TCGA-CA-6717-01 5 159820617 159820617 G A C5orf54 3'UTR 0.36 TCGA-CA-6717-01 5 159821738 159821738 C T C5orf54 Missense_Mutation p.E254K 0.08 deleterious(0.03) possibly_damaging(0.654) TCGA-CA-6717-01 5 159822383 159822383 T C C5orf54 Missense_Mutation p.N39D 0.08 tolerated(0.42) probably_damaging(0.997) TCGA-CA-6717-01 5 159840491 159840491 A C SLU7 Missense_Mutation p.I181S 0.23 deleterious(0) benign(0.211) TCGA-CA-6717-01 5 159840921 159840921 C A SLU7 Missense_Mutation p.K130N 0.21 deleterious(0.04) possibly_damaging(0.516) TCGA-CA-6717-01 5 160114910 160114910 C T ATP10B Missense_Mutation p.D58N 0.10 tolerated(0.06) benign(0.014) TCGA-CA-6717-01 5 160114911 160114911 T C ATP10B Silent p.Q57Q 0.08 TCGA-CA-6717-01 5 161128682 161128682 G A GABRA6 Missense_Mutation p.R422Q 0.08 deleterious(0.01) probably_damaging(0.99) TCGA-CA-6717-01 5 161309659 161309659 G T GABRA1 Missense_Mutation p.D219Y 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 5 161317944 161317944 A C GABRA1 Missense_Mutation p.R248S 0.23 deleterious(0) possibly_damaging(0.692) TCGA-CA-6717-01 5 161317946 161317946 A C GABRA1 Missense_Mutation p.K249T 0.10 deleterious(0) possibly_damaging(0.54) TCGA-CA-6717-01 5 161495107 161495107 C T GABRG2 Silent p.Y34Y 0.09 TCGA-CA-6717-01 5 162909750 162909750 G T HMMR Missense_Mutation p.Q496H 0.09 deleterious(0.04) benign(0.009) TCGA-CA-6717-01 5 162923 162923 T G PLEKHG4B Silent p.A556A 0.09 TCGA-CA-6717-01 5 16675041 16675041 A C MYO10 Missense_Mutation p.W1629G 0.09 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 5 167689172 167689172 T C TENM2 Missense_Mutation p.F2561S 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 5 168139289 168139289 G A SLIT3 Silent p.L852L 0.18 TCGA-CA-6717-01 5 169018093 169018093 A C SPDL1 Missense_Mutation p.E67D 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-CA-6717-01 5 169018168 169018168 G A SPDL1 Silent p.E92E 0.22 TCGA-CA-6717-01 5 169025980 169025980 G T SPDL1 Nonsense_Mutation p.E381* 0.18 TCGA-CA-6717-01 5 169025982 169025982 A C SPDL1 Missense_Mutation p.E381D 0.18 tolerated(0.21) probably_damaging(0.983) TCGA-CA-6717-01 5 169098125 169098125 G T DOCK2 Nonsense_Mutation p.E90* 0.22 TCGA-CA-6717-01 5 169144418 169144418 A C DOCK2 Missense_Mutation p.K688Q 0.15 deleterious(0.02) possibly_damaging(0.838) TCGA-CA-6717-01 5 169308432 169308432 C T FAM196B Missense_Mutation p.R454Q 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-CA-6717-01 5 169310860 169310860 G A FAM196B Missense_Mutation p.R15C 0.22 deleterious(0) probably_damaging(0.947) TCGA-CA-6717-01 5 169435569 169435569 C A DOCK2 Missense_Mutation p.F1047L 0.21 deleterious(0.02) possibly_damaging(0.488) TCGA-CA-6717-01 5 169468124 169468124 T A DOCK2 Missense_Mutation p.L1244H 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 169535190 169535190 C A FOXI1 Missense_Mutation p.L238I 0.30 tolerated(0.22) benign(0.004) TCGA-CA-6717-01 5 169677864 169677864 C T LCP2 Missense_Mutation p.S450N 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-CA-6717-01 5 170632606 170632606 T G RANBP17 Missense_Mutation p.F741V 0.14 deleterious(0) benign(0.112) TCGA-CA-6717-01 5 171337656 171337656 C T FBXW11 Missense_Mutation p.R98Q 0.16 tolerated(0.15) benign(0.089) TCGA-CA-6717-01 5 171638824 171638824 A C UBTD2 3'UTR 0.08 TCGA-CA-6717-01 5 171661228 171661228 C A UBTD2 Nonsense_Mutation p.E69* 0.11 TCGA-CA-6717-01 5 171766794 171766794 G T SH3PXD2B Missense_Mutation p.P439T 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 172560685 172560685 G T CREBRF Missense_Mutation p.K619N 0.28 tolerated(1) benign(0.004) TCGA-CA-6717-01 5 172659671 172659671 G A NKX2-5 Silent p.F292F 0.11 TCGA-CA-6717-01 5 173337544 173337544 G A CPEB4 Missense_Mutation p.D382N 0.09 tolerated_low_confidence(0.3) probably_damaging(0.981) TCGA-CA-6717-01 5 173426721 173426721 G A C5orf47 Missense_Mutation p.V144I 0.09 deleterious(0.01) possibly_damaging(0.621) TCGA-CA-6717-01 5 174870036 174870036 G A DRD1 Missense_Mutation p.R23C 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 5 175110444 175110444 C A HRH2 Missense_Mutation p.L70M 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 175511950 175511950 T C FAM153B Intron 0.12 TCGA-CA-6717-01 5 175906204 175906204 G A FAF2 Missense_Mutation p.E27K 0.13 deleterious(0.01) benign(0.116) TCGA-CA-6717-01 5 176002753 176002753 C T CDHR2 Silent p.I291I 0.08 TCGA-CA-6717-01 5 176016347 176016347 G A CDHR2 Missense_Mutation p.D1009N 0.28 tolerated(0.08) probably_damaging(0.927) TCGA-CA-6717-01 5 176306404 176306404 C T UNC5A Missense_Mutation p.R760W 0.10 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 5 176334115 176334115 C T UIMC1 Missense_Mutation p.D638N 0.13 tolerated(0.1) possibly_damaging(0.56) TCGA-CA-6717-01 5 176468200 176468200 T G ZNF346 Missense_Mutation p.I83M 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-CA-6717-01 5 176859056 176859056 T G GRK6 Missense_Mutation p.F70C 0.17 deleterious(0) benign(0.188) TCGA-CA-6717-01 5 176939339 176939339 G T DDX41 Missense_Mutation p.F535L 0.14 deleterious(0.03) possibly_damaging(0.587) TCGA-CA-6717-01 5 177031436 177031436 G A B4GALT7 Missense_Mutation p.E103K 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 5 178311021 178311021 G A ZNF354B Missense_Mutation p.R523Q 0.14 tolerated(0.31) benign(0.023) TCGA-CA-6717-01 5 178359183 178359183 G A ZFP2 Missense_Mutation p.R290Q 0.24 deleterious(0.02) benign(0.324) TCGA-CA-6717-01 5 178392126 178392126 G A ZNF454 Missense_Mutation p.E241K 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 5 178392280 178392280 G T ZNF454 Missense_Mutation p.R292I 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 178392613 178392613 G A ZNF454 Missense_Mutation p.R403Q 0.11 tolerated(1) benign(0.398) TCGA-CA-6717-01 5 178418522 178418522 C A GRM6 Nonsense_Mutation p.E254* 0.09 TCGA-CA-6717-01 5 178418553 178418553 G T GRM6 Silent p.V243V 0.10 TCGA-CA-6717-01 5 178460208 178460208 G T ZNF879 Missense_Mutation p.R420I 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 178506698 178506698 A G ZNF354C Missense_Mutation p.N422S 0.15 tolerated(1) probably_damaging(0.985) TCGA-CA-6717-01 5 179043889 179043889 C A HNRNPH1 Missense_Mutation p.M396I 0.10 tolerated(0.69) benign(0.004) TCGA-CA-6717-01 5 179133297 179133297 T C CANX Silent p.Y70Y 0.10 TCGA-CA-6717-01 5 179225415 179225415 T C MGAT4B Missense_Mutation p.E496G 0.22 tolerated(0.07) benign(0.016) TCGA-CA-6717-01 5 179757763 179757763 G A GFPT2 Silent p.F157F 0.25 TCGA-CA-6717-01 5 180166996 180166996 C T OR2Y1 Silent p.P21P 0.27 TCGA-CA-6717-01 5 1802444 1802444 G T NDUFS6 Missense_Mutation p.D48Y 0.26 deleterious(0) possibly_damaging(0.594) TCGA-CA-6717-01 5 1802460 1802460 G A NDUFS6 Missense_Mutation p.R53K 0.23 tolerated(0.9) benign(0.001) TCGA-CA-6717-01 5 180275766 180275766 C T ZFP62 3'UTR 0.22 TCGA-CA-6717-01 5 180277567 180277567 C T ZFP62 Missense_Mutation p.E310K 0.10 tolerated(0.66) possibly_damaging(0.799) TCGA-CA-6717-01 5 180278081 180278081 C T ZFP62 Silent p.K138K 0.26 TCGA-CA-6717-01 5 180374640 180374640 G T BTNL8 Intron 0.09 TCGA-CA-6717-01 5 180432469 180432469 C A BTNL3 Missense_Mutation p.S333Y 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6717-01 5 180475158 180475158 G T BTNL9 Missense_Mutation p.G114V 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 180684290 180684290 A C TRIM52 3'UTR 0.29 TCGA-CA-6717-01 5 180687078 180687078 C G TRIM52 Missense_Mutation p.C246S 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 182218 182218 C A PLEKHG4B Missense_Mutation p.S1199Y 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6717-01 5 19473185 19473185 C T CDH18 3'UTR 0.22 TCGA-CA-6717-01 5 19612642 19612642 C T CDH18 Missense_Mutation p.A238T 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 19838916 19838916 G T CDH18 Missense_Mutation p.F60L 0.19 tolerated(0.09) benign(0.004) TCGA-CA-6717-01 5 205865 205865 T C CCDC127 Silent p.G110G 0.09 TCGA-CA-6717-01 5 21751900 21751900 G T CDH12 Silent p.V777V 0.10 TCGA-CA-6717-01 5 21842321 21842321 C A CDH12 Missense_Mutation p.V255F 0.20 deleterious(0) possibly_damaging(0.902) TCGA-CA-6717-01 5 21842402 21842402 C A CDH12 Nonsense_Mutation p.E228* 0.19 TCGA-CA-6717-01 5 22078634 22078634 C T CDH12 Missense_Mutation p.R51H 0.09 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 5 23510065 23510065 G A PRDM9 Missense_Mutation p.R77Q 0.21 tolerated_low_confidence(0.22) benign(0.002) TCGA-CA-6717-01 5 23522454 23522454 C T PRDM9 Nonsense_Mutation p.R184* 0.10 TCGA-CA-6717-01 5 23526537 23526537 G A PRDM9 Missense_Mutation p.R447H 0.09 tolerated(0.54) benign(0.069) TCGA-CA-6717-01 5 24491828 24491828 C A CDH10 Missense_Mutation p.S578I 0.20 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 5 24491912 24491912 C A CDH10 Missense_Mutation p.R550I 0.21 deleterious(0.02) benign(0.048) TCGA-CA-6717-01 5 24492977 24492977 A C CDH10 Missense_Mutation p.F525V 0.09 tolerated(0.26) benign(0.347) TCGA-CA-6717-01 5 24492982 24492982 T G CDH10 Missense_Mutation p.K523T 0.20 deleterious(0.02) benign(0.096) TCGA-CA-6717-01 5 24498589 24498589 C A CDH10 Missense_Mutation p.R478I 0.16 deleterious(0) benign(0.06) TCGA-CA-6717-01 5 24593377 24593377 C T CDH10 Missense_Mutation p.V75I 0.19 tolerated(0.18) benign(0.025) TCGA-CA-6717-01 5 26881451 26881451 C A CDH9 Nonsense_Mutation p.E722* 0.21 TCGA-CA-6717-01 5 26881471 26881471 A C CDH9 Missense_Mutation p.F715C 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 5 26886100 26886100 C T CDH9 Silent p.P535P 0.21 TCGA-CA-6717-01 5 26915885 26915885 G T CDH9 Missense_Mutation p.L126I 0.21 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 5 31983743 31983743 C T PDZD2 Missense_Mutation p.S320L 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 5 32000262 32000262 T C PDZD2 Missense_Mutation p.L380S 0.09 tolerated(0.34) possibly_damaging(0.809) TCGA-CA-6717-01 5 32048695 32048695 C T PDZD2 Missense_Mutation p.R524W 0.16 deleterious(0) probably_damaging(0.975) TCGA-CA-6717-01 5 32072280 32072280 C A PDZD2 Missense_Mutation p.S861Y 0.15 deleterious(0) probably_damaging(0.935) TCGA-CA-6717-01 5 32074680 32074680 C A PDZD2 Missense_Mutation p.D1156E 0.22 deleterious(0.03) benign(0.127) TCGA-CA-6717-01 5 32090833 32090833 C T PDZD2 Missense_Mutation p.R2427W 0.10 deleterious(0) possibly_damaging(0.891) TCGA-CA-6717-01 5 32090873 32090873 C T PDZD2 Missense_Mutation p.S2440L 0.20 tolerated(0.4) benign(0.009) TCGA-CA-6717-01 5 32108300 32108300 C A PDZD2 3'UTR 0.46 TCGA-CA-6717-01 5 32230326 32230326 G T MTMR12 Missense_Mutation p.S601Y 0.11 tolerated(0.2) benign(0.098) TCGA-CA-6717-01 5 32230402 32230402 T A MTMR12 Nonsense_Mutation p.R576* 0.23 TCGA-CA-6717-01 5 32364304 32364304 A G ZFR Silent p.V971V 0.08 TCGA-CA-6717-01 5 32404176 32404176 C A ZFR Missense_Mutation p.Q353H 0.08 deleterious(0) unknown(0) TCGA-CA-6717-01 5 32444739 32444739 G T ZFR Missense_Mutation p.S9Y 0.08 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-CA-6717-01 5 32599128 32599128 G A SUB1 Missense_Mutation p.R86K 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6717-01 5 32783002 32783002 A G NPR3 Missense_Mutation p.I432V 0.10 tolerated(1) benign(0.02) TCGA-CA-6717-01 5 32789643 32789643 G T AC026703.1 Nonsense_Mutation p.E46* 0.12 TCGA-CA-6717-01 5 32790685 32790685 G A NPR3 3'UTR 0.25 TCGA-CA-6717-01 5 32790972 32790972 A C NPR3 3'UTR 0.25 TCGA-CA-6717-01 5 32791194 32791194 G T NPR3 3'UTR 0.14 TCGA-CA-6717-01 5 33534963 33534963 G A ADAMTS12 Silent p.N1527N 0.12 TCGA-CA-6717-01 5 33630895 33630895 C T ADAMTS12 Missense_Mutation p.G671D 0.08 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 5 33684012 33684012 G C ADAMTS12 Nonsense_Mutation p.Y261* 0.12 TCGA-CA-6717-01 5 33881323 33881323 C A ADAMTS12 Missense_Mutation p.K130N 0.21 deleterious(0.05) benign(0.038) TCGA-CA-6717-01 5 33891965 33891965 T C ADAMTS12 5'UTR 0.11 TCGA-CA-6717-01 5 33937559 33937559 G A RXFP3 Silent p.T238T 0.10 TCGA-CA-6717-01 5 34807930 34807930 A G RAI14 Missense_Mutation p.D119G 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 5 34823147 34823147 A G RAI14 Silent p.K403K 0.08 TCGA-CA-6717-01 5 34823475 34823475 C A RAI14 Missense_Mutation p.L513I 0.11 tolerated(0.1) probably_damaging(0.981) TCGA-CA-6717-01 5 34823501 34823501 T G RAI14 Missense_Mutation p.N521K 0.09 tolerated(0.76) benign(0.023) TCGA-CA-6717-01 5 34823947 34823947 C A RAI14 Missense_Mutation p.S670Y 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-CA-6717-01 5 34850317 34850317 C T TTC23L Nonsense_Mutation p.R95* 0.18 TCGA-CA-6717-01 5 34850344 34850344 T A TTC23L Missense_Mutation p.F104I 0.08 deleterious(0.04) benign(0.331) TCGA-CA-6717-01 5 34864549 34864549 G T TTC23L Nonsense_Mutation p.E182* 0.17 TCGA-CA-6717-01 5 34880328 34880328 G A TTC23L Missense_Mutation p.R331Q 0.16 tolerated(1) benign(0.001) TCGA-CA-6717-01 5 34923235 34923235 T G BRIX1 Intron 0.18 TCGA-CA-6717-01 5 35037080 35037080 C A AGXT2 Missense_Mutation p.E151D 0.28 deleterious(0.03) benign(0.12) TCGA-CA-6717-01 5 35705825 35705825 A G SPEF2 Silent p.K860K 0.18 TCGA-CA-6717-01 5 35709191 35709191 A C SPEF2 Missense_Mutation p.K936T 0.08 tolerated(0.11) possibly_damaging(0.522) TCGA-CA-6717-01 5 35727920 35727920 C A SPEF2 Missense_Mutation p.P1020T 0.19 deleterious(0) benign(0.255) TCGA-CA-6717-01 5 35771830 35771830 G T SPEF2 Missense_Mutation p.K1307N 0.14 tolerated(0.11) possibly_damaging(0.691) TCGA-CA-6717-01 5 35774018 35774018 G A SPEF2 Missense_Mutation p.A1325T 0.10 tolerated(0.31) benign(0.004) TCGA-CA-6717-01 5 35807043 35807043 A G SPEF2 Missense_Mutation p.I1749V 0.08 tolerated(0.51) benign(0.084) TCGA-CA-6717-01 5 35867483 35867483 C T IL7R Silent p.F99F 0.15 TCGA-CA-6717-01 5 35873635 35873635 G A IL7R Silent p.P197P 0.26 TCGA-CA-6717-01 5 35910623 35910623 C T CAPSL Missense_Mutation p.D54N 0.17 tolerated(0.32) benign(0.026) TCGA-CA-6717-01 5 35991470 35991470 C T UGT3A1 5'UTR 0.21 TCGA-CA-6717-01 5 36035782 36035782 C T UGT3A2 3'UTR 0.08 TCGA-CA-6717-01 5 36037940 36037940 C A UGT3A2 Missense_Mutation p.E418D 0.26 tolerated(0.16) benign(0.084) TCGA-CA-6717-01 5 36038004 36038004 T C UGT3A2 Missense_Mutation p.N397S 0.20 deleterious(0) possibly_damaging(0.895) TCGA-CA-6717-01 5 36111272 36111272 C A LMBRD2 Nonsense_Mutation p.E577* 0.10 TCGA-CA-6717-01 5 36116585 36116585 A C LMBRD2 Silent p.A471A 0.08 TCGA-CA-6717-01 5 36117978 36117978 C A LMBRD2 Missense_Mutation p.K387N 0.10 deleterious(0) benign(0.057) TCGA-CA-6717-01 5 36168445 36168445 G A SKP2 Silent p.S189S 0.11 TCGA-CA-6717-01 5 36265564 36265564 C A RANBP3L Missense_Mutation p.K134N 0.18 tolerated(1) benign(0.002) TCGA-CA-6717-01 5 36608664 36608664 C T SLC1A3 Missense_Mutation p.R47W 0.23 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 5 36686177 36686177 C T SLC1A3 Missense_Mutation p.R479W 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 37017258 37017258 A C NIPBL Missense_Mutation p.L1638F 0.19 deleterious(0) possibly_damaging(0.858) TCGA-CA-6717-01 5 37024792 37024792 C T NIPBL Missense_Mutation p.R1894C 0.06 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 5 37038767 37038767 T C NIPBL Missense_Mutation p.F2012S 0.14 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 5 37044534 37044534 T G NIPBL Missense_Mutation p.F2065C 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 37046225 37046225 T G NIPBL Missense_Mutation p.D2171E 0.20 tolerated(0.44) benign(0.015) TCGA-CA-6717-01 5 37059249 37059249 T G NIPBL Missense_Mutation p.L2556R 0.10 deleterious(0) possibly_damaging(0.869) TCGA-CA-6717-01 5 37108424 37108424 G T C5orf42 Missense_Mutation p.L3130I 0.08 deleterious(0) possibly_damaging(0.848) TCGA-CA-6717-01 5 37169193 37169193 A G C5orf42 Silent p.I2311I 0.20 TCGA-CA-6717-01 5 37184915 37184915 T G C5orf42 Missense_Mutation p.K1486Q 0.25 tolerated(0.15) benign(0.371) TCGA-CA-6717-01 5 37243135 37243135 C A C5orf42 Missense_Mutation p.E219D 0.07 deleterious(0) probably_damaging(0.97) TCGA-CA-6717-01 5 37294429 37294429 A G NUP155 Splice_Site p.X1310_splice 0.25 TCGA-CA-6717-01 5 37333656 37333656 A C NUP155 Nonsense_Mutation p.L476* 0.22 TCGA-CA-6717-01 5 37379475 37379475 G A WDR70 Silent p.E2E 0.20 TCGA-CA-6717-01 5 37701209 37701209 T C WDR70 Silent p.L414L 0.21 TCGA-CA-6717-01 5 37816032 37816032 G T GDNF Silent p.V136V 0.23 TCGA-CA-6717-01 5 38352349 38352349 C T EGFLAM Missense_Mutation p.S154L 0.21 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CA-6717-01 5 38370470 38370470 C T EGFLAM Silent p.L206L 0.14 TCGA-CA-6717-01 5 38407010 38407010 G T EGFLAM Missense_Mutation p.K303N 0.12 tolerated_low_confidence(0.41) benign(0.002) TCGA-CA-6717-01 5 38407051 38407051 C A EGFLAM Missense_Mutation p.P317H 0.21 deleterious_low_confidence(0.03) benign(0.013) TCGA-CA-6717-01 5 38407222 38407222 G A EGFLAM Missense_Mutation p.G374D 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 38438392 38438392 C T EGFLAM Nonsense_Mutation p.R767* 0.17 TCGA-CA-6717-01 5 38484904 38484904 C A LIFR Missense_Mutation p.S855I 0.21 deleterious(0.04) possibly_damaging(0.566) TCGA-CA-6717-01 5 38510602 38510602 C T LIFR Missense_Mutation p.E319K 0.15 tolerated(0.37) benign(0.003) TCGA-CA-6717-01 5 38510808 38510808 G A LIFR Missense_Mutation p.S250F 0.24 deleterious(0.05) benign(0.066) TCGA-CA-6717-01 5 38527317 38527317 T G LIFR Missense_Mutation p.N113H 0.10 tolerated(0.34) benign(0.001) TCGA-CA-6717-01 5 38921855 38921855 A G OSMR Missense_Mutation p.K575R 0.10 tolerated(0.11) possibly_damaging(0.511) TCGA-CA-6717-01 5 38950099 38950099 G A RICTOR Missense_Mutation p.S1284L 0.13 tolerated(0.06) benign(0.418) TCGA-CA-6717-01 5 38950323 38950323 C T RICTOR Silent p.T1209T 0.19 TCGA-CA-6717-01 5 38960005 38960005 C T RICTOR Missense_Mutation p.E643K 0.12 deleterious(0.04) benign(0.408) TCGA-CA-6717-01 5 38982000 38982000 C T RICTOR Missense_Mutation p.R241Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 5 39119651 39119651 T C FYB Missense_Mutation p.R752G 0.10 deleterious(0) possibly_damaging(0.717) TCGA-CA-6717-01 5 39137796 39137796 T G FYB Missense_Mutation p.K484T 0.10 deleterious(0) benign(0.432) TCGA-CA-6717-01 5 39202327 39202327 C A FYB Nonsense_Mutation p.E256* 0.10 TCGA-CA-6717-01 5 39288871 39288871 T C C9 Silent p.K533K 0.13 TCGA-CA-6717-01 5 39316021 39316021 T G C9 Missense_Mutation p.K242N 0.10 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 5 39341681 39341681 C T C9 Missense_Mutation p.G102E 0.18 tolerated(0.06) possibly_damaging(0.651) TCGA-CA-6717-01 5 39383143 39383143 C T DAB2 Silent p.S306S 0.13 TCGA-CA-6717-01 5 40777689 40777689 C T PRKAA1 Splice_Site p.X43_splice 0.09 TCGA-CA-6717-01 5 40841544 40841544 A C CARD6 Missense_Mutation p.E20D 0.14 deleterious(0.02) possibly_damaging(0.742) TCGA-CA-6717-01 5 40950098 40950098 G A C7 Missense_Mutation p.A359T 0.13 tolerated(0.69) benign(0.025) TCGA-CA-6717-01 5 40981518 40981518 G A C7 Missense_Mutation p.R792Q 0.16 tolerated(0.31) benign(0.1) TCGA-CA-6717-01 5 41000818 41000818 G T MROH2B Missense_Mutation p.L1438I 0.24 deleterious(0.01) possibly_damaging(0.858) TCGA-CA-6717-01 5 41005673 41005673 G A MROH2B Missense_Mutation p.S1275L 0.28 tolerated(0.62) benign(0.026) TCGA-CA-6717-01 5 41033226 41033226 T C MROH2B Missense_Mutation p.T760A 0.12 tolerated(0.34) benign(0.078) TCGA-CA-6717-01 5 41071000 41071000 G T MROH2B 5'UTR 0.29 TCGA-CA-6717-01 5 41149388 41149388 C A C6 Nonsense_Mutation p.E860* 0.18 TCGA-CA-6717-01 5 41158868 41158868 C A C6 Missense_Mutation p.D626Y 0.24 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 5 41313632 41313632 A C PLCXD3 3'UTR 0.26 TCGA-CA-6717-01 5 41381946 41381946 C T PLCXD3 Missense_Mutation p.R265K 0.09 tolerated(0.91) benign(0.034) TCGA-CA-6717-01 5 41382490 41382490 A C PLCXD3 Missense_Mutation p.F84V 0.12 deleterious(0.04) possibly_damaging(0.897) TCGA-CA-6717-01 5 41917162 41917162 G T C5orf51 Nonsense_Mutation p.E216* 0.15 TCGA-CA-6717-01 5 41941408 41941408 G T FBXO4 3'UTR 0.20 TCGA-CA-6717-01 5 42695111 42695111 C T GHR Missense_Mutation p.S120F 0.08 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 5 42719065 42719065 T G GHR Missense_Mutation p.F486V 0.08 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 5 42799488 42799488 A G CCDC152 Silent p.K190K 0.09 TCGA-CA-6717-01 5 42801065 42801065 G A SEPP1 Silent p.C301C 0.22 TCGA-CA-6717-01 5 42804782 42804782 C A SEPP1 Missense_Mutation p.K170N 0.09 tolerated(0.67) benign(0.16) TCGA-CA-6717-01 5 43039443 43039443 G T ANXA2R 3'UTR 0.24 TCGA-CA-6717-01 5 43161871 43161871 C A ZNF131 Missense_Mutation p.L264I 0.13 tolerated(0.32) benign(0.294) TCGA-CA-6717-01 5 43280825 43280825 T G NIM1K Missense_Mutation p.I435M 0.21 deleterious(0.04) benign(0.437) TCGA-CA-6717-01 5 43381975 43381975 T G CCL28 Missense_Mutation p.K124T 0.12 tolerated(0.11) benign(0.051) TCGA-CA-6717-01 5 43446530 43446530 A G C5orf28 Silent p.L148L 0.10 TCGA-CA-6717-01 5 43487052 43487052 C T C5orf34 Missense_Mutation p.D628N 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 43509282 43509282 G A C5orf34 Missense_Mutation p.R54C 0.17 deleterious(0) possibly_damaging(0.896) TCGA-CA-6717-01 5 43539070 43539070 G T PAIP1 Missense_Mutation p.H268N 0.33 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 5 43644426 43644426 A C NNT Missense_Mutation p.K366T 0.09 deleterious(0.03) possibly_damaging(0.614) TCGA-CA-6717-01 5 43645491 43645491 G A NNT Silent p.P441P 0.09 TCGA-CA-6717-01 5 446349 446349 C T EXOC3 Missense_Mutation p.A10V 0.17 deleterious(0.01) probably_damaging(0.939) TCGA-CA-6717-01 5 44809334 44809334 G A MRPS30 Silent p.K90K 0.13 TCGA-CA-6717-01 5 45645402 45645402 G T HCN1 Missense_Mutation p.S245Y 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 5 49699281 49699281 A G EMB Missense_Mutation p.V203A 0.15 deleterious(0) benign(0.311) TCGA-CA-6717-01 5 52201715 52201715 C A ITGA1 Missense_Mutation p.L478I 0.11 tolerated(1) benign(0.033) TCGA-CA-6717-01 5 52248367 52248367 C A ITGA1 3'UTR 0.31 TCGA-CA-6717-01 5 52356834 52356834 G T ITGA2 Missense_Mutation p.E472D 0.10 tolerated(0.26) benign(0.006) TCGA-CA-6717-01 5 52360797 52360797 G A ITGA2 Missense_Mutation p.R553Q 0.15 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 5 52360929 52360929 G A ITGA2 Missense_Mutation p.R597H 0.08 tolerated(0.06) benign(0.03) TCGA-CA-6717-01 5 52370293 52370293 A C ITGA2 Missense_Mutation p.K884Q 0.09 tolerated(0.07) benign(0.042) TCGA-CA-6717-01 5 52377521 52377521 G T ITGA2 Nonsense_Mutation p.E1047* 0.16 TCGA-CA-6717-01 5 52781599 52781599 T G FST Intron 0.29 TCGA-CA-6717-01 5 5303457 5303457 C T ADAMTS16 Missense_Mutation p.R956W 0.18 deleterious(0) possibly_damaging(0.901) TCGA-CA-6717-01 5 53752164 53752164 G T HSPB3 3'UTR 0.17 TCGA-CA-6717-01 5 53815922 53815922 C A SNX18 3'UTR 0.08 TCGA-CA-6717-01 5 54326399 54326399 T A GZMK Missense_Mutation p.I117N 0.12 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 5 5441306 5441306 A C KIAA0947 Silent p.G93G 0.08 TCGA-CA-6717-01 5 54424446 54424446 C A CDC20B Splice_Site p.X233_splice 0.09 TCGA-CA-6717-01 5 54466439 54466439 C A CDC20B Intron 0.14 TCGA-CA-6717-01 5 5448008 5448008 A G KIAA0947 Missense_Mutation p.K201R 0.10 tolerated(0.08) benign(0.122) TCGA-CA-6717-01 5 54552244 54552244 A G DHX29 3'UTR 0.09 TCGA-CA-6717-01 5 54566508 54566508 G T DHX29 Missense_Mutation p.S964Y 0.09 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 5 5461573 5461573 A C KIAA0947 Missense_Mutation p.E709A 0.15 tolerated(0.45) benign(0.013) TCGA-CA-6717-01 5 5463072 5463072 G T KIAA0947 Nonsense_Mutation p.E1209* 0.13 TCGA-CA-6717-01 5 5465200 5465200 C T KIAA0947 Missense_Mutation p.A1918V 0.24 tolerated(0.07) possibly_damaging(0.895) TCGA-CA-6717-01 5 55075872 55075872 G T DDX4 Nonsense_Mutation p.G159* 0.20 TCGA-CA-6717-01 5 55081272 55081272 A G DDX4 Intron 0.25 TCGA-CA-6717-01 5 55086436 55086436 G T DDX4 Missense_Mutation p.G402V 0.27 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 55109573 55109573 A - DDX4 Frame_Shift_Del p.I565Yfs*35 0.09 TCGA-CA-6717-01 5 55168238 55168238 T C IL31RA Missense_Mutation p.V138A 0.16 tolerated(0.73) benign(0.037) TCGA-CA-6717-01 5 55195875 55195875 G T IL31RA Missense_Mutation p.E328D 0.08 deleterious(0.03) benign(0.053) TCGA-CA-6717-01 5 55237133 55237133 A C IL6ST Missense_Mutation p.F845C 0.30 tolerated(0.12) benign(0.013) TCGA-CA-6717-01 5 55265534 55265534 A C IL6ST Missense_Mutation p.F72V 0.15 tolerated(0.79) benign(0) TCGA-CA-6717-01 5 56177046 56177046 T G MAP3K1 Missense_Mutation p.F772L 0.24 tolerated(0.17) benign(0.094) TCGA-CA-6717-01 5 56207034 56207034 T G SETD9 Missense_Mutation p.V46G 0.10 deleterious(0) benign(0.265) TCGA-CA-6717-01 5 56207097 56207097 A C SETD9 Missense_Mutation p.D67A 0.11 tolerated(0.11) benign(0.209) TCGA-CA-6717-01 5 56542239 56542239 G A GPBP1 Silent p.Q204Q 0.24 TCGA-CA-6717-01 5 57750400 57750400 G A PLK2 3'UTR 0.10 TCGA-CA-6717-01 5 57752366 57752366 T C PLK2 Missense_Mutation p.K403E 0.24 tolerated(1) benign(0.001) TCGA-CA-6717-01 5 57791895 57791895 C T GAPT 3'UTR 0.17 TCGA-CA-6717-01 5 58021897 58021897 T G RAB3C Missense_Mutation p.I107M 0.08 tolerated(0.28) possibly_damaging(0.454) TCGA-CA-6717-01 5 58147045 58147045 T C RAB3C Missense_Mutation p.F184S 0.13 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 5 58270586 58270586 G A PDE4D Missense_Mutation p.P779S 0.24 deleterious_low_confidence(0.02) benign(0.321) TCGA-CA-6717-01 5 59893660 59893660 T C DEPDC1B Missense_Mutation p.K504E 0.11 deleterious(0.02) benign(0.069) TCGA-CA-6717-01 5 59899283 59899283 G A DEPDC1B Silent p.L393L 0.09 TCGA-CA-6717-01 5 61651008 61651008 A T KIF2A Missense_Mutation p.N194I 0.07 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 61699161 61699161 T G DIMT1 Missense_Mutation p.N31T 0.11 deleterious(0.02) probably_damaging(0.948) TCGA-CA-6717-01 5 61822051 61822051 A C IPO11 Missense_Mutation p.H700P 0.29 deleterious(0.01) possibly_damaging(0.767) TCGA-CA-6717-01 5 61846250 61846250 G A IPO11 Silent p.P809P 0.22 TCGA-CA-6717-01 5 61876139 61876139 A C LRRC70 Missense_Mutation p.N292H 0.30 deleterious(0.04) probably_damaging(0.983) TCGA-CA-6717-01 5 61876362 61876362 A C LRRC70 Missense_Mutation p.K366T 0.22 tolerated(0.06) benign(0.001) TCGA-CA-6717-01 5 6312593 6312593 A G CTD-2324F15.2 RNA 0.18 TCGA-CA-6717-01 5 63257037 63257037 C T HTR1A Silent p.P170P 0.15 TCGA-CA-6717-01 5 6337355 6337355 C T CTD-2324F15.2 RNA 0.22 TCGA-CA-6717-01 5 63496666 63496666 A C RNF180 Missense_Mutation p.N11T 0.32 tolerated_low_confidence(0.46) benign(0.036) TCGA-CA-6717-01 5 63665590 63665590 C T RNF180 Silent p.V576V 0.08 TCGA-CA-6717-01 5 640595 640595 A G CEP72 Missense_Mutation p.E472G 0.18 deleterious(0.02) benign(0.022) TCGA-CA-6717-01 5 64082392 64082392 T G CWC27 Missense_Mutation p.I179M 0.08 tolerated(0.11) benign(0.258) TCGA-CA-6717-01 5 65008884 65008884 A C SGTB Missense_Mutation p.I36M 0.15 deleterious(0) benign(0.18) TCGA-CA-6717-01 5 65118736 65118736 C T NLN Missense_Mutation p.A703V 0.12 tolerated(0.34) benign(0.008) TCGA-CA-6717-01 5 65374396 65374396 T A ERBB2IP 3'Flank 0.11 TCGA-CA-6717-01 5 65474572 65474572 A C SREK1 Missense_Mutation p.D584A 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-CA-6717-01 5 66350237 66350237 G A MAST4 Missense_Mutation p.R227Q 0.17 probably_damaging(0.974) TCGA-CA-6717-01 5 66440515 66440515 C T MAST4 Nonsense_Mutation p.R917* 0.06 TCGA-CA-6717-01 5 66445249 66445249 A C MAST4 Missense_Mutation p.N1043H 0.16 probably_damaging(0.973) TCGA-CA-6717-01 5 66461336 66461336 C A MAST4 Missense_Mutation p.S2110Y 0.16 possibly_damaging(0.583) TCGA-CA-6717-01 5 66478659 66478659 T G CD180 3'UTR 0.14 TCGA-CA-6717-01 5 66478805 66478805 C T CD180 Silent p.K622K 0.10 TCGA-CA-6717-01 5 66479737 66479737 C A CD180 Missense_Mutation p.G312W 0.11 deleterious(0.01) possibly_damaging(0.745) TCGA-CA-6717-01 5 6746337 6746337 G T PAPD7 Missense_Mutation p.R169I 0.22 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 5 67522657 67522657 G T PIK3R1 Nonsense_Mutation p.E52* 0.11 TCGA-CA-6717-01 5 67588187 67588187 G A PIK3R1 Silent p.S339S 0.14 TCGA-CA-6717-01 5 67593301 67593301 G A PIK3R1 Missense_Mutation p.E683K 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 68490518 68490518 G A CENPH Missense_Mutation p.E79K 0.12 deleterious(0.02) benign(0.025) TCGA-CA-6717-01 5 68553886 68553886 A C CDK7 Missense_Mutation p.N105T 0.11 tolerated(0.48) benign(0.003) TCGA-CA-6717-01 5 68667909 68667909 A C RAD17 Intron 0.19 TCGA-CA-6717-01 5 68840911 68840911 C T OCLN Silent p.G406G 0.06 TCGA-CA-6717-01 5 70759930 70759930 A C BDP1 Silent p.P215P 0.10 TCGA-CA-6717-01 5 70793116 70793116 A C BDP1 Missense_Mutation p.N607H 0.27 deleterious(0.03) probably_damaging(0.957) TCGA-CA-6717-01 5 70806650 70806650 T C BDP1 Missense_Mutation p.F1244S 0.12 tolerated(0.11) benign(0.003) TCGA-CA-6717-01 5 70858221 70858221 A C BDP1 Missense_Mutation p.R2539S 0.21 tolerated(0.05) probably_damaging(0.994) TCGA-CA-6717-01 5 71491491 71491491 C A MAP1B Missense_Mutation p.S770Y 0.10 unknown(0) TCGA-CA-6717-01 5 71756578 71756578 G A ZNF366 Missense_Mutation p.S249L 0.33 tolerated(0.29) benign(0.01) TCGA-CA-6717-01 5 71757296 71757296 C T ZNF366 Missense_Mutation p.D10N 0.19 tolerated_low_confidence(0.31) benign(0.004) TCGA-CA-6717-01 5 72185647 72185647 G T TNPO1 Nonsense_Mutation p.E522* 0.07 TCGA-CA-6717-01 5 72313097 72313097 A C FCHO2 Missense_Mutation p.K253T 0.11 deleterious(0.05) benign(0.038) TCGA-CA-6717-01 5 72370656 72370656 A C FCHO2 Missense_Mutation p.Y556S 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 72419763 72419763 C T TMEM171 Missense_Mutation p.T188M 0.19 deleterious(0) possibly_damaging(0.646) TCGA-CA-6717-01 5 72857086 72857086 G A ANKRA2 Missense_Mutation p.S106F 0.09 tolerated(0.05) probably_damaging(0.991) TCGA-CA-6717-01 5 73163841 73163841 G A ARHGEF28 Missense_Mutation p.E765K 0.22 deleterious(0.01) benign(0.15) TCGA-CA-6717-01 5 74130269 74130269 A G FAM169A Missense_Mutation p.Y158H 0.09 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 5 74325586 74325586 T A GCNT4 Missense_Mutation p.R93W 0.16 deleterious(0) benign(0.438) TCGA-CA-6717-01 5 74325879 74325879 G A GCNT4 5'UTR 0.23 TCGA-CA-6717-01 5 74326715 74326715 A G GCNT4 5'UTR 0.20 TCGA-CA-6717-01 5 74638416 74638416 G A HMGCR 5'UTR 0.24 TCGA-CA-6717-01 5 74892360 74892360 G T POLK Missense_Mutation p.E614D 0.25 tolerated(0.13) benign(0.005) TCGA-CA-6717-01 5 74984926 74984926 A G POC5 Missense_Mutation p.F347S 0.11 deleterious(0) probably_damaging(0.959) TCGA-CA-6717-01 5 74984936 74984936 T G POC5 Missense_Mutation p.K344Q 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-CA-6717-01 5 75427644 75427644 G T SV2C Missense_Mutation p.K23N 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.697) TCGA-CA-6717-01 5 75490853 75490853 C A SV2C Missense_Mutation p.F230L 0.08 tolerated(0.33) benign(0.009) TCGA-CA-6717-01 5 75914460 75914460 T G F2RL2 Missense_Mutation p.E24D 0.11 tolerated(0.3) benign(0.001) TCGA-CA-6717-01 5 75919075 75919075 T C F2RL2 5'UTR 0.12 TCGA-CA-6717-01 5 75950801 75950801 A C IQGAP2 Missense_Mutation p.K765Q 0.26 deleterious(0.05) possibly_damaging(0.764) TCGA-CA-6717-01 5 76128858 76128858 T A F2RL1 Silent p.I142I 0.17 TCGA-CA-6717-01 5 76129362 76129362 T C F2RL1 Silent p.H310H 0.10 TCGA-CA-6717-01 5 76129515 76129515 C T F2RL1 Silent p.C361C 0.22 TCGA-CA-6717-01 5 76254670 76254670 A C CRHBP Missense_Mutation p.I217L 0.22 tolerated(0.41) possibly_damaging(0.695) TCGA-CA-6717-01 5 76348613 76348613 A C AGGF1 Missense_Mutation p.N483T 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 5 76351408 76351408 A C AGGF1 Missense_Mutation p.K568T 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 76355535 76355535 T C AGGF1 Missense_Mutation p.F604S 0.08 deleterious(0.01) probably_damaging(0.974) TCGA-CA-6717-01 5 76733164 76733164 T C WDR41 Missense_Mutation p.T364A 0.23 tolerated(0.21) benign(0.034) TCGA-CA-6717-01 5 76934414 76934414 T G OTP 5'UTR 0.19 TCGA-CA-6717-01 5 76987344 76987344 A G TBCA Intron 0.23 TCGA-CA-6717-01 5 77477429 77477429 C A AP3B1 Nonsense_Mutation p.E282* 0.23 TCGA-CA-6717-01 5 77523978 77523978 C T AP3B1 Missense_Mutation p.R122Q 0.08 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 5 77806055 77806055 G T LHFPL2 5'UTR 0.25 TCGA-CA-6717-01 5 7802469 7802469 T G ADCY2 Missense_Mutation p.F923V 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 78294040 78294040 T C DMGDH Silent p.L822L 0.10 TCGA-CA-6717-01 5 78384410 78384410 G T BHMT2 3'UTR 0.09 TCGA-CA-6717-01 5 78612092 78612092 G A JMY Missense_Mutation p.E977K 0.09 deleterious(0) possibly_damaging(0.558) TCGA-CA-6717-01 5 7867551 7867551 G A FASTKD3 Missense_Mutation p.R216C 0.08 deleterious(0.04) possibly_damaging(0.462) TCGA-CA-6717-01 5 7870968 7870968 G T MTRR Nonsense_Mutation p.E48* 0.09 TCGA-CA-6717-01 5 79025151 79025151 T G CMYA5 Missense_Mutation p.I188S 0.09 benign(0) TCGA-CA-6717-01 5 79026352 79026352 T G CMYA5 Silent p.V588V 0.16 TCGA-CA-6717-01 5 79028658 79028658 C A CMYA5 Missense_Mutation p.S1357Y 0.18 probably_damaging(0.979) TCGA-CA-6717-01 5 79029379 79029379 G A CMYA5 Silent p.E1597E 0.21 TCGA-CA-6717-01 5 79029422 79029422 G T CMYA5 Missense_Mutation p.D1612Y 0.15 possibly_damaging(0.615) TCGA-CA-6717-01 5 79030902 79030902 C A CMYA5 Nonsense_Mutation p.S2105* 0.16 TCGA-CA-6717-01 5 79031641 79031641 C T CMYA5 Silent p.I2351I 0.30 TCGA-CA-6717-01 5 79032324 79032324 C A CMYA5 Missense_Mutation p.S2579Y 0.31 possibly_damaging(0.675) TCGA-CA-6717-01 5 79033702 79033702 T C CMYA5 Silent p.D3038D 0.08 TCGA-CA-6717-01 5 79284458 79284458 A G MTX3 Missense_Mutation p.F50L 0.20 tolerated(0.1) probably_damaging(0.998) TCGA-CA-6717-01 5 79378955 79378955 C A THBS4 Missense_Mutation p.F959L 0.10 tolerated_low_confidence(1) benign(0) TCGA-CA-6717-01 5 79616749 79616749 G T SPZ1 Nonsense_Mutation p.E239* 0.20 TCGA-CA-6717-01 5 79732784 79732784 G T ZFYVE16 Nonsense_Mutation p.E94* 0.26 TCGA-CA-6717-01 5 79855709 79855709 C T ANKRD34B Missense_Mutation p.E44K 0.09 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 5 79945215 79945215 C A DHFR Nonsense_Mutation p.E79* 0.10 TCGA-CA-6717-01 5 80063766 80063766 G T MSH3 Missense_Mutation p.E637D 0.09 deleterious(0.02) possibly_damaging(0.609) TCGA-CA-6717-01 5 80388690 80388691 - A RASGRF2 Frame_Shift_Ins p.E490Gfs*42 0.13 TCGA-CA-6717-01 5 80511744 80511744 G T RASGRF2 Missense_Mutation p.R1135I 0.11 deleterious(0) possibly_damaging(0.906) TCGA-CA-6717-01 5 81046803 81046803 T C SSBP2 Missense_Mutation p.E20G 0.14 deleterious(0.01) benign(0.003) TCGA-CA-6717-01 5 81571898 81571898 T G RPS23 3'UTR 0.20 TCGA-CA-6717-01 5 81601165 81601165 T C ATP6AP1L 5'UTR 0.22 TCGA-CA-6717-01 5 819650 819650 G A ZDHHC11 Missense_Mutation p.S379L 0.28 tolerated_low_confidence(0.28) benign(0.32) TCGA-CA-6717-01 5 82360922 82360922 A C TMEM167A Missense_Mutation p.N6K 0.20 deleterious(0.04) benign(0.12) TCGA-CA-6717-01 5 82649113 82649113 C A XRCC4 3'UTR 0.08 TCGA-CA-6717-01 5 82816303 82816303 C A VCAN Silent p.L726L 0.19 TCGA-CA-6717-01 5 82817833 82817833 C T VCAN Silent p.I1236I 0.16 TCGA-CA-6717-01 5 82832727 82832727 C A VCAN Intron 0.12 TCGA-CA-6717-01 5 82832769 82832769 C A VCAN Intron 0.18 TCGA-CA-6717-01 5 82837054 82837054 T G VCAN Missense_Mutation p.F2744L 0.12 tolerated(1) benign(0) TCGA-CA-6717-01 5 82837613 82837613 G T VCAN Missense_Mutation p.D2931Y 0.16 tolerated(0.05) probably_damaging(0.91) TCGA-CA-6717-01 5 82837934 82837934 C A VCAN Missense_Mutation p.L3038I 0.28 tolerated(0.17) benign(0.356) TCGA-CA-6717-01 5 85580688 85580688 G T NBPF22P RNA 0.20 TCGA-CA-6717-01 5 86649000 86649000 G A RASA1 Missense_Mutation p.R427Q 0.15 deleterious(0.02) benign(0.053) TCGA-CA-6717-01 5 86672800 86672800 G A RASA1 Missense_Mutation p.E763K 0.12 deleterious(0.02) benign(0.105) TCGA-CA-6717-01 5 86681163 86681163 A C RASA1 Missense_Mutation p.K935T 0.24 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 5 896854 896854 T G TRIP13 Missense_Mutation p.N111K 0.11 tolerated(0.62) benign(0.007) TCGA-CA-6717-01 5 89703575 89703575 C A CETN3 Missense_Mutation p.D32Y 0.08 deleterious(0) possibly_damaging(0.863) TCGA-CA-6717-01 5 89797807 89797807 T C POLR3G Splice_Site p.X146_splice 0.12 TCGA-CA-6717-01 5 89821057 89821057 G T LYSMD3 Nonsense_Mutation p.S17* 0.10 TCGA-CA-6717-01 5 89821088 89821088 T G LYSMD3 Missense_Mutation p.N7H 0.27 tolerated(0.26) benign(0.003) TCGA-CA-6717-01 5 89953726 89953726 T C GPR98 Silent p.P1461P 0.10 TCGA-CA-6717-01 5 89971181 89971181 C T GPR98 Silent p.I1744I 0.11 TCGA-CA-6717-01 5 89990185 89990185 T G GPR98 Missense_Mutation p.F2538V 0.14 possibly_damaging(0.879) TCGA-CA-6717-01 5 89990430 89990430 A G GPR98 Silent p.Q2619Q 0.16 TCGA-CA-6717-01 5 90012298 90012298 C A GPR98 Missense_Mutation p.L3067I 0.08 possibly_damaging(0.899) TCGA-CA-6717-01 5 90049557 90049557 C A GPR98 Missense_Mutation p.S3763Y 0.23 probably_damaging(0.962) TCGA-CA-6717-01 5 90074743 90074743 C T GPR98 Missense_Mutation p.T4304M 0.12 possibly_damaging(0.569) TCGA-CA-6717-01 5 90074803 90074803 T G GPR98 Missense_Mutation p.F4324C 0.23 probably_damaging(0.963) TCGA-CA-6717-01 5 90368339 90368339 C T GPR98 Silent p.F6076F 0.18 TCGA-CA-6717-01 5 9043084 9043084 G T SEMA5A Nonsense_Mutation p.Y1050* 0.10 TCGA-CA-6717-01 5 90678764 90678764 A C ARRDC3 Missense_Mutation p.I49S 0.19 deleterious(0) possibly_damaging(0.794) TCGA-CA-6717-01 5 9190540 9190540 C A SEMA5A Missense_Mutation p.R371I 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 9202317 9202317 A C SEMA5A Missense_Mutation p.F228V 0.10 deleterious(0) possibly_damaging(0.561) TCGA-CA-6717-01 5 92923623 92923623 C T NR2F1 Missense_Mutation p.A155V 0.28 deleterious(0.01) benign(0.103) TCGA-CA-6717-01 5 92923728 92923728 C T NR2F1 Missense_Mutation p.S190L 0.14 deleterious(0.01) possibly_damaging(0.506) TCGA-CA-6717-01 5 93788755 93788755 C T KIAA0825 Missense_Mutation p.D756N 0.24 tolerated(0.2) possibly_damaging(0.678) TCGA-CA-6717-01 5 93859652 93859652 T G KIAA0825 Missense_Mutation p.K95Q 0.09 tolerated(0.15) benign(0.038) TCGA-CA-6717-01 5 94006568 94006568 C A ANKRD32 Missense_Mutation p.S561Y 0.24 tolerated(0.08) benign(0.124) TCGA-CA-6717-01 5 94006613 94006613 T G ANKRD32 Missense_Mutation p.F576C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 94207064 94207064 G A MCTP1 Nonsense_Mutation p.R699* 0.22 TCGA-CA-6717-01 5 94267676 94267676 A C MCTP1 Missense_Mutation p.S398R 0.22 tolerated(0.43) possibly_damaging(0.791) TCGA-CA-6717-01 5 94818243 94818243 T G TTC37 Silent p.P1382P 0.19 TCGA-CA-6717-01 5 94882833 94882833 T C TTC37 Missense_Mutation p.T8A 0.22 tolerated(0.84) benign(0.001) TCGA-CA-6717-01 5 94990045 94990045 G T RFESD Nonsense_Mutation p.G115* 0.14 TCGA-CA-6717-01 5 94994563 94994563 C A SPATA9 Nonsense_Mutation p.E177* 0.22 TCGA-CA-6717-01 5 95018514 95018514 C A SPATA9 Missense_Mutation p.K15N 0.12 tolerated(0.07) possibly_damaging(0.787) TCGA-CA-6717-01 5 95158197 95158197 A C GLRX Missense_Mutation p.I57S 0.10 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 5 95730638 95730638 C T PCSK1 Missense_Mutation p.R605H 0.13 deleterious(0.02) probably_damaging(0.991) TCGA-CA-6717-01 5 95751803 95751803 C A PCSK1 Nonsense_Mutation p.E215* 0.16 TCGA-CA-6717-01 5 96232104 96232104 G A ERAP2 Missense_Mutation p.E423K 0.16 tolerated(0.93) benign(0.245) TCGA-CA-6717-01 5 96322307 96322307 G A LNPEP Missense_Mutation p.S355N 0.07 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 5 96328833 96328833 A C LNPEP Missense_Mutation p.K416Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 5 96360311 96360311 C A LNPEP Missense_Mutation p.S883Y 0.14 tolerated(1) benign(0.03) TCGA-CA-6717-01 5 96503072 96503072 A C RIOK2 Intron 0.23 TCGA-CA-6717-01 5 98210800 98210800 T G CHD1 Missense_Mutation p.K1139T 0.20 deleterious(0) probably_damaging(0.917) TCGA-CA-6717-01 5 98238644 98238644 C T CHD1 Missense_Mutation p.D133N 0.11 tolerated_low_confidence(0.51) possibly_damaging(0.555) TCGA-CA-6717-01 6 100368821 100368821 A T MCHR2 Missense_Mutation p.F340I 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CA-6717-01 6 100395716 100395716 A G MCHR2 Missense_Mutation p.L105P 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 100838597 100838597 G C SIM1 Missense_Mutation p.D647E 0.08 tolerated_low_confidence(0.22) benign(0.019) TCGA-CA-6717-01 6 100896426 100896426 C A SIM1 Missense_Mutation p.E224D 0.20 deleterious(0.04) benign(0.365) TCGA-CA-6717-01 6 101248365 101248366 - T ASCC3 Frame_Shift_Ins p.I313Nfs*7 0.09 TCGA-CA-6717-01 6 102074398 102074398 G T GRIK2 Missense_Mutation p.D143Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 6 102134204 102134204 A C GRIK2 Silent p.S309S 0.10 TCGA-CA-6717-01 6 102376368 102376368 C A GRIK2 Missense_Mutation p.S649Y 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 102511924 102511924 G C GRIK2 Intron 0.11 TCGA-CA-6717-01 6 105549045 105549045 C T BVES Silent p.P334P 0.20 TCGA-CA-6717-01 6 10557073 10557073 G A GCNT2 Intron 0.35 TCGA-CA-6717-01 6 105614469 105614469 C A POPDC3 Intron 0.20 TCGA-CA-6717-01 6 106546937 106546937 A G PRDM1 Intron 0.12 TCGA-CA-6717-01 6 106555323 106555323 A C PRDM1 Missense_Mutation p.K814Q 0.21 tolerated(0.05) possibly_damaging(0.611) TCGA-CA-6717-01 6 107854662 107854662 G T SOBP Splice_Site p.X141_splice 0.19 TCGA-CA-6717-01 6 10791909 10791909 G A MAK Missense_Mutation p.R439W 0.30 deleterious(0.02) benign(0.003) TCGA-CA-6717-01 6 10803998 10803998 G A MAK Silent p.V206V 0.35 TCGA-CA-6717-01 6 108194080 108194080 T G SEC63 Missense_Mutation p.N691H 0.09 tolerated(0.14) benign(0.005) TCGA-CA-6717-01 6 108986064 108986064 C A FOXO3 3'UTR 0.10 TCGA-CA-6717-01 6 109319841 109319841 C A SESN1 Nonsense_Mutation p.E283* 0.28 TCGA-CA-6717-01 6 109757345 109757345 C A PPIL6 Nonsense_Mutation p.E65* 0.11 TCGA-CA-6717-01 6 10990061 10990061 C T ELOVL2 Missense_Mutation p.V214M 0.37 tolerated(0.16) possibly_damaging(0.598) TCGA-CA-6717-01 6 109954492 109954492 A C AK9 Missense_Mutation p.L323R 0.17 deleterious(0.02) benign(0.027) TCGA-CA-6717-01 6 110083371 110083371 G A FIG4 Missense_Mutation p.R450H 0.09 tolerated(0.46) benign(0.031) TCGA-CA-6717-01 6 110301607 110301607 A G GPR6 3'UTR 0.13 TCGA-CA-6717-01 6 110746252 110746252 A G SLC22A16 Silent p.L520L 0.19 TCGA-CA-6717-01 6 111280437 111280437 A C GTF3C6 Missense_Mutation p.E40D 0.24 tolerated(0.23) benign(0.036) TCGA-CA-6717-01 6 111288830 111288830 C A GTF3C6 Missense_Mutation p.S160Y 0.11 deleterious(0.03) benign(0.396) TCGA-CA-6717-01 6 111498912 111498912 A C SLC16A10 Intron 0.38 TCGA-CA-6717-01 6 111587429 111587429 C T KIAA1919 Nonsense_Mutation p.R222* 0.22 TCGA-CA-6717-01 6 111688951 111688951 C A REV3L Nonsense_Mutation p.E2014* 0.10 TCGA-CA-6717-01 6 111693993 111693993 T C REV3L Silent p.S1855S 0.09 TCGA-CA-6717-01 6 111697372 111697372 C T REV3L Missense_Mutation p.S729N 0.15 tolerated(0.1) benign(0.003) TCGA-CA-6717-01 6 111737484 111737484 A G REV3L Splice_Site p.X110_splice 0.17 TCGA-CA-6717-01 6 11213517 11213517 T C NEDD9 Silent p.K152K 0.14 TCGA-CA-6717-01 6 112389462 112389462 A C WISP3 Missense_Mutation p.K233T 0.09 tolerated(0.07) benign(0.037) TCGA-CA-6717-01 6 112390684 112390684 A C WISP3 Missense_Mutation p.K327T 0.19 deleterious(0.01) possibly_damaging(0.901) TCGA-CA-6717-01 6 112395979 112395979 A C TUBE1 Missense_Mutation p.L296R 0.16 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 6 112430673 112430673 G A LAMA4 Silent p.G1813G 0.09 TCGA-CA-6717-01 6 112441579 112441579 C A LAMA4 Missense_Mutation p.L1524F 0.18 deleterious(0.01) benign(0.098) TCGA-CA-6717-01 6 112496624 112496624 G T LAMA4 Silent p.I416I 0.16 TCGA-CA-6717-01 6 112535096 112535096 G A LAMA4 Intron 0.21 TCGA-CA-6717-01 6 114267279 114267279 A C HDAC2 Missense_Mutation p.F292C 0.19 deleterious(0) probably_damaging(0.958) TCGA-CA-6717-01 6 116747852 116747852 C T DSE Missense_Mutation p.L178F 0.10 deleterious(0.03) probably_damaging(0.94) TCGA-CA-6717-01 6 116757938 116757938 C A DSE Missense_Mutation p.S769R 0.19 deleterious_low_confidence(0) benign(0.203) TCGA-CA-6717-01 6 116817992 116817992 A T TRAPPC3L 3'UTR 0.20 TCGA-CA-6717-01 6 116861548 116861548 T A TRAPPC3L Missense_Mutation p.E73V 0.13 deleterious(0) probably_damaging(0.948) TCGA-CA-6717-01 6 116879176 116879176 G T FAM26D Missense_Mutation p.K106N 0.17 deleterious(0.01) possibly_damaging(0.725) TCGA-CA-6717-01 6 116987935 116987935 C T ZUFSP Missense_Mutation p.E141K 0.09 tolerated(0.78) benign(0.003) TCGA-CA-6717-01 6 117083162 117083162 G T FAM162B Missense_Mutation p.A123D 0.22 deleterious(0.03) probably_damaging(0.977) TCGA-CA-6717-01 6 117128035 117128035 A G GPRC6A Missense_Mutation p.L278P 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-CA-6717-01 6 117128281 117128281 A G GPRC6A Missense_Mutation p.I196T 0.16 tolerated(1) benign(0) TCGA-CA-6717-01 6 117215194 117215194 A C RFX6 Missense_Mutation p.Y204S 0.09 deleterious(0) probably_damaging(0.937) TCGA-CA-6717-01 6 117237246 117237246 G A RFX6 Missense_Mutation p.E286K 0.15 deleterious(0) probably_damaging(0.954) TCGA-CA-6717-01 6 117237471 117237471 T G RFX6 Silent p.L322L 0.10 TCGA-CA-6717-01 6 117241471 117241471 A T RFX6 Splice_Site p.X395_splice 0.12 TCGA-CA-6717-01 6 117248641 117248641 C A RFX6 Missense_Mutation p.F779L 0.32 tolerated_low_confidence(0.12) benign(0.008) TCGA-CA-6717-01 6 117586898 117586898 A G VGLL2 5'UTR 0.20 TCGA-CA-6717-01 6 117622241 117622241 C A ROS1 Missense_Mutation p.R2210I 0.25 tolerated(0.37) benign(0.143) TCGA-CA-6717-01 6 117622269 117622269 C A ROS1 Nonsense_Mutation p.E2201* 0.27 TCGA-CA-6717-01 6 117647430 117647430 A G ROS1 Silent p.F1838F 0.12 TCGA-CA-6717-01 6 117674297 117674297 C A ROS1 Missense_Mutation p.D1393Y 0.07 deleterious(0.02) benign(0.17) TCGA-CA-6717-01 6 117677889 117677889 C A ROS1 Missense_Mutation p.E1348D 0.21 tolerated(0.28) benign(0.002) TCGA-CA-6717-01 6 117708062 117708062 T C ROS1 Silent p.G705G 0.14 TCGA-CA-6717-01 6 117708983 117708983 G A ROS1 Silent p.G658G 0.09 TCGA-CA-6717-01 6 117710657 117710657 C A ROS1 Nonsense_Mutation p.E539* 0.10 TCGA-CA-6717-01 6 117710989 117710989 C A ROS1 Missense_Mutation p.R428I 0.18 deleterious(0.01) benign(0.282) TCGA-CA-6717-01 6 117715823 117715823 T C ROS1 Missense_Mutation p.E312G 0.24 tolerated(0.46) benign(0.421) TCGA-CA-6717-01 6 117884544 117884544 A C GOPC Missense_Mutation p.F421C 0.24 deleterious_low_confidence(0.03) benign(0.312) TCGA-CA-6717-01 6 118475741 118475741 C A SLC35F1 Missense_Mutation p.L103I 0.19 deleterious(0.02) benign(0.219) TCGA-CA-6717-01 6 118635206 118635206 C A SLC35F1 Missense_Mutation p.L340I 0.13 tolerated(1) benign(0.124) TCGA-CA-6717-01 6 118791742 118791742 C A CEP85L Missense_Mutation p.K663N 0.17 tolerated(0.12) benign(0.005) TCGA-CA-6717-01 6 118880745 118880745 C A PLN 3'UTR 0.15 TCGA-CA-6717-01 6 118881173 118881173 C T PLN 3'UTR 0.10 TCGA-CA-6717-01 6 118887155 118887155 A G CEP85L Missense_Mutation p.I189T 0.19 tolerated(0.72) benign(0) TCGA-CA-6717-01 6 119137098 119137098 G A MCM9 Missense_Mutation p.S774L 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-CA-6717-01 6 119345817 119345817 C A FAM184A Missense_Mutation p.K107N 0.14 deleterious(0.01) possibly_damaging(0.549) TCGA-CA-6717-01 6 119500929 119500929 A C MAN1A1 3'UTR 0.15 TCGA-CA-6717-01 6 119628142 119628142 A G MAN1A1 Missense_Mutation p.W207R 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 12124192 12124192 C T HIVEP1 Silent p.F1388F 0.42 TCGA-CA-6717-01 6 12124863 12124863 C T HIVEP1 Missense_Mutation p.S1612L 0.51 tolerated(0.4) benign(0.03) TCGA-CA-6717-01 6 12125273 12125273 T C HIVEP1 Missense_Mutation p.S1749P 0.13 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 12125962 12125962 C T HIVEP1 Silent p.L1978L 0.09 TCGA-CA-6717-01 6 121412128 121412128 G A TBC1D32 Silent p.C1175C 0.20 TCGA-CA-6717-01 6 121563427 121563427 C A TBC1D32 Nonsense_Mutation p.G693* 0.09 TCGA-CA-6717-01 6 121577301 121577301 T G TBC1D32 Missense_Mutation p.S622R 0.22 tolerated(0.5) benign(0.002) TCGA-CA-6717-01 6 121577398 121577398 C T TBC1D32 Silent p.S589S 0.13 TCGA-CA-6717-01 6 121600271 121600271 C A TBC1D32 Nonsense_Mutation p.E577* 0.10 TCGA-CA-6717-01 6 121638696 121638696 T G TBC1D32 Missense_Mutation p.K147T 0.12 tolerated(0.13) benign(0.139) TCGA-CA-6717-01 6 121642780 121642780 C A TBC1D32 Nonsense_Mutation p.E106* 0.10 TCGA-CA-6717-01 6 121769588 121769588 A C GJA1 3'UTR 0.14 TCGA-CA-6717-01 6 123124844 123124844 A C SMPDL3A Missense_Mutation p.N202H 0.11 tolerated(0.08) possibly_damaging(0.722) TCGA-CA-6717-01 6 123318392 123318392 G A CLVS2 5'UTR 0.14 TCGA-CA-6717-01 6 123318531 123318531 G T CLVS2 5'UTR 0.19 TCGA-CA-6717-01 6 123759217 123759217 C T TRDN Missense_Mutation p.E348K 0.08 tolerated_low_confidence(1) benign(0.004) TCGA-CA-6717-01 6 123759248 123759248 C A TRDN Missense_Mutation p.K337N 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.879) TCGA-CA-6717-01 6 123869722 123869722 T G TRDN Missense_Mutation p.K90Q 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-CA-6717-01 6 125597370 125597370 C T HDDC2 Silent p.E179E 0.32 TCGA-CA-6717-01 6 126080492 126080492 C T HEY2 Silent p.A186A 0.12 TCGA-CA-6717-01 6 126249960 126249960 C T NCOA7 3'UTR 0.20 TCGA-CA-6717-01 6 126669628 126669628 G T CENPW Missense_Mutation p.S86I 0.08 deleterious(0) possibly_damaging(0.865) TCGA-CA-6717-01 6 127469880 127469880 T C RSPO3 Missense_Mutation p.F62S 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 127608469 127608469 T C RNF146 Silent p.P237P 0.15 TCGA-CA-6717-01 6 127768485 127768485 C A KIAA0408 Nonsense_Mutation p.E327* 0.16 TCGA-CA-6717-01 6 127768692 127768692 C T KIAA0408 Missense_Mutation p.D258N 0.19 tolerated(0.25) benign(0.057) TCGA-CA-6717-01 6 127771229 127771229 G T KIAA0408 Missense_Mutation p.P135H 0.19 deleterious(0.03) probably_damaging(0.935) TCGA-CA-6717-01 6 127912704 127912704 A C C6orf58 Missense_Mutation p.E310D 0.26 tolerated_low_confidence(0.26) benign(0.075) TCGA-CA-6717-01 6 128134327 128134327 C A THEMIS Missense_Mutation p.D487Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 6 128134756 128134756 G A THEMIS Missense_Mutation p.R344W 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 128135026 128135026 C A THEMIS Missense_Mutation p.D254Y 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 128150668 128150668 C T THEMIS Missense_Mutation p.G221D 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 6 128150755 128150755 A G THEMIS Missense_Mutation p.I192T 0.14 deleterious(0.02) possibly_damaging(0.904) TCGA-CA-6717-01 6 128151067 128151067 A T THEMIS Missense_Mutation p.I88N 0.16 deleterious(0.01) possibly_damaging(0.576) TCGA-CA-6717-01 6 128176183 128176183 T G THEMIS Missense_Mutation p.N81T 0.26 deleterious(0) possibly_damaging(0.653) TCGA-CA-6717-01 6 128176311 128176311 T C THEMIS Silent p.G38G 0.14 TCGA-CA-6717-01 6 128505747 128505747 C T PTPRK Missense_Mutation p.R331Q 0.12 deleterious(0.01) probably_damaging(0.975) TCGA-CA-6717-01 6 129618894 129618894 C A LAMA2 Missense_Mutation p.S974Y 0.26 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 129634054 129634054 A C LAMA2 Missense_Mutation p.N1075H 0.09 tolerated(0.44) benign(0.042) TCGA-CA-6717-01 6 129722440 129722440 C T LAMA2 Silent p.L1839L 0.09 TCGA-CA-6717-01 6 129723618 129723618 T C LAMA2 Silent p.S1904S 0.09 TCGA-CA-6717-01 6 129762061 129762061 C T LAMA2 Silent p.L2062L 0.15 TCGA-CA-6717-01 6 129813183 129813183 C T LAMA2 Missense_Mutation p.P2679L 0.12 tolerated(0.07) possibly_damaging(0.861) TCGA-CA-6717-01 6 129959551 129959551 T G ARHGAP18 Missense_Mutation p.E180D 0.19 tolerated(0.35) benign(0.003) TCGA-CA-6717-01 6 130535568 130535568 T G SAMD3 Missense_Mutation p.K61N 0.17 tolerated_low_confidence(0.65) benign(0.014) TCGA-CA-6717-01 6 130761721 130761721 C T TMEM200A Missense_Mutation p.R52C 0.19 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 6 130761924 130761924 T C TMEM200A Silent p.H119H 0.20 TCGA-CA-6717-01 6 130762144 130762144 G A TMEM200A Missense_Mutation p.E193K 0.22 tolerated(0.22) possibly_damaging(0.836) TCGA-CA-6717-01 6 130762544 130762544 C T TMEM200A Missense_Mutation p.S326F 0.14 deleterious(0.01) probably_damaging(0.956) TCGA-CA-6717-01 6 130763537 130763537 C A TMEM200A 3'UTR 0.28 TCGA-CA-6717-01 6 130763799 130763799 A C TMEM200A 3'UTR 0.10 TCGA-CA-6717-01 6 131276362 131276362 T G EPB41L2 Missense_Mutation p.E196D 0.10 deleterious(0.03) probably_damaging(0.965) TCGA-CA-6717-01 6 1314653 1314653 C T FOXQ1 3'UTR 0.12 TCGA-CA-6717-01 6 131466461 131466461 G T AKAP7 Missense_Mutation p.R19I 0.12 deleterious(0.01) benign(0.078) TCGA-CA-6717-01 6 131900238 131900238 T G ARG1 Missense_Mutation p.F48V 0.25 tolerated(0.48) benign(0) TCGA-CA-6717-01 6 131917822 131917822 G A MED23 Missense_Mutation p.R872C 0.34 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 6 131973703 131973703 A C ENPP3 Missense_Mutation p.K100T 0.09 deleterious(0.05) benign(0.023) TCGA-CA-6717-01 6 131973973 131973973 G T ENPP3 Nonsense_Mutation p.E136* 0.16 TCGA-CA-6717-01 6 132182810 132182810 G A ENPP1 Missense_Mutation p.G331R 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 132203492 132203492 T C ENPP1 Missense_Mutation p.F703S 0.12 tolerated(0.43) benign(0.038) TCGA-CA-6717-01 6 132204868 132204868 A C ENPP1 Missense_Mutation p.E755D 0.20 tolerated(1) benign(0.034) TCGA-CA-6717-01 6 132207729 132207729 A C ENPP1 Missense_Mutation p.E824D 0.15 tolerated(0.24) benign(0.139) TCGA-CA-6717-01 6 132619026 132619026 T G MOXD1 Missense_Mutation p.K526T 0.27 tolerated(0.09) benign(0.245) TCGA-CA-6717-01 6 132793477 132793477 C A STX7 Nonsense_Mutation p.E65* 0.20 TCGA-CA-6717-01 6 132859606 132859606 T G TAAR9 Missense_Mutation p.F60V 0.22 deleterious(0) benign(0.012) TCGA-CA-6717-01 6 132860269 132860269 G T TAAR9 Missense_Mutation p.D281Y 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 6 132860376 132860376 A G TAAR9 Silent p.Q316Q 0.17 TCGA-CA-6717-01 6 132873972 132873972 T C TAAR8 Silent p.F47F 0.17 TCGA-CA-6717-01 6 13287430 13287430 A T TBC1D7 Intron 0.25 TCGA-CA-6717-01 6 132966742 132966742 T G TAAR1 Missense_Mutation p.K134T 0.27 tolerated(0.14) probably_damaging(0.918) TCGA-CA-6717-01 6 133004294 133004294 G A VNN1 Silent p.C509C 0.18 TCGA-CA-6717-01 6 133050109 133050109 T G VNN3 Intron 0.15 TCGA-CA-6717-01 6 133070863 133070863 C T VNN2 Missense_Mutation p.E448K 0.15 tolerated(0.18) benign(0.001) TCGA-CA-6717-01 6 133105227 133105227 C T SLC18B1 Missense_Mutation p.G168E 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 13365542 13365542 G A GFOD1 Silent p.F202F 0.10 TCGA-CA-6717-01 6 133783856 133783856 C T EYA4 Silent p.F226F 0.19 TCGA-CA-6717-01 6 133827288 133827288 G T EYA4 Missense_Mutation p.M412I 0.09 deleterious(0.02) benign(0.246) TCGA-CA-6717-01 6 134305530 134305530 T G TBPL1 Missense_Mutation p.F100C 0.13 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 6 13470594 13470594 T G AL583828.1 5'UTR 0.11 TCGA-CA-6717-01 6 135358314 135358314 T C HBS1L Intron 0.20 TCGA-CA-6717-01 6 135787246 135787246 G T AHI1 Missense_Mutation p.S152Y 0.10 tolerated(0.16) benign(0.235) TCGA-CA-6717-01 6 136512768 136512768 C T PDE7B Silent p.I381I 0.16 TCGA-CA-6717-01 6 136588205 136588205 C T BCLAF1 Missense_Mutation p.D836N 0.19 deleterious(0.01) possibly_damaging(0.728) TCGA-CA-6717-01 6 136596782 136596782 C A BCLAF1 Missense_Mutation p.K580N 0.10 deleterious(0.02) possibly_damaging(0.607) TCGA-CA-6717-01 6 136597225 136597225 C A BCLAF1 Nonsense_Mutation p.E480* 0.09 TCGA-CA-6717-01 6 136597399 136597399 T G BCLAF1 Missense_Mutation p.S422R 0.11 tolerated(0.24) benign(0.025) TCGA-CA-6717-01 6 136597487 136597487 T C BCLAF1 Silent p.Q392Q 0.10 TCGA-CA-6717-01 6 136599738 136599738 C T BCLAF1 Missense_Mutation p.R94K 0.11 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 6 137519371 137519371 T C IFNGR1 Missense_Mutation p.S423G 0.09 tolerated(0.19) benign(0.026) TCGA-CA-6717-01 6 137524775 137524775 A G IFNGR1 Silent p.I198I 0.08 TCGA-CA-6717-01 6 137536500 137536500 A C IFNGR1 Intron 0.15 TCGA-CA-6717-01 6 138196856 138196856 A C TNFAIP3 Missense_Mutation p.K173T 0.16 tolerated(0.06) benign(0.155) TCGA-CA-6717-01 6 138199825 138199825 C A TNFAIP3 Missense_Mutation p.Q415K 0.12 tolerated(0.96) benign(0.001) TCGA-CA-6717-01 6 138564115 138564115 G T KIAA1244 Missense_Mutation p.Q190H 0.11 tolerated(0.15) benign(0.001) TCGA-CA-6717-01 6 139109509 139109509 G T CCDC28A Nonsense_Mutation p.E252* 0.21 TCGA-CA-6717-01 6 139170453 139170453 A G ECT2L Silent p.E317E 0.15 TCGA-CA-6717-01 6 139202243 139202243 G A ECT2L Silent p.A605A 0.16 TCGA-CA-6717-01 6 139206840 139206840 G A ECT2L Missense_Mutation p.R711Q 0.20 tolerated(0.25) benign(0.093) TCGA-CA-6717-01 6 139563979 139563979 G T TXLNB Missense_Mutation p.S580Y 0.13 tolerated_low_confidence(0.3) benign(0.071) TCGA-CA-6717-01 6 139583875 139583875 C A TXLNB Missense_Mutation p.E241D 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 6 139597982 139597982 C T TXLNB Silent p.K167K 0.14 TCGA-CA-6717-01 6 139609759 139609759 T G TXLNB Missense_Mutation p.E93A 0.16 deleterious(0.02) benign(0.025) TCGA-CA-6717-01 6 13979074 13979074 C G RNF182 3'UTR 0.34 TCGA-CA-6717-01 6 13979197 13979197 G T RNF182 3'UTR 0.18 TCGA-CA-6717-01 6 13979922 13979922 G T RNF182 3'UTR 0.18 TCGA-CA-6717-01 6 13980218 13980218 A G RNF182 3'UTR 0.10 TCGA-CA-6717-01 6 142399771 142399771 T C NMBR Missense_Mutation p.Y231C 0.16 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 6 143093232 143093232 G A HIVEP2 Missense_Mutation p.R882W 0.21 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 143755088 143755088 C T ADAT2 Missense_Mutation p.D78N 0.16 deleterious(0) possibly_damaging(0.855) TCGA-CA-6717-01 6 144184236 144184236 G A LTV1 Missense_Mutation p.R377Q 0.11 tolerated(0.75) benign(0.015) TCGA-CA-6717-01 6 144769802 144769802 C T UTRN Missense_Mutation p.R657C 0.22 deleterious(0.04) possibly_damaging(0.582) TCGA-CA-6717-01 6 144772609 144772609 G A UTRN Missense_Mutation p.E726K 0.17 deleterious(0.04) benign(0.069) TCGA-CA-6717-01 6 144780022 144780022 A G UTRN Missense_Mutation p.N801D 0.09 tolerated(0.64) benign(0.119) TCGA-CA-6717-01 6 144814436 144814436 G T UTRN Splice_Site p.X1480_splice 0.11 TCGA-CA-6717-01 6 144858847 144858847 A C UTRN Missense_Mutation p.E2121D 0.10 deleterious(0.04) possibly_damaging(0.569) TCGA-CA-6717-01 6 144863983 144863983 C A UTRN Missense_Mutation p.S2191Y 0.16 tolerated(1) benign(0.002) TCGA-CA-6717-01 6 146007364 146007364 G T EPM2A Missense_Mutation p.L124I 0.09 tolerated(0.39) benign(0.029) TCGA-CA-6717-01 6 146126918 146126918 G A FBXO30 Silent p.G208G 0.09 TCGA-CA-6717-01 6 146264800 146264800 G A SHPRH Missense_Mutation p.R573C 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.773) TCGA-CA-6717-01 6 146708066 146708066 C T GRM1 Missense_Mutation p.T548M 0.09 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 6 146755530 146755530 G C GRM1 Silent p.G1061G 0.30 TCGA-CA-6717-01 6 146993443 146993443 A C ADGB Missense_Mutation p.K309N 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-CA-6717-01 6 146993483 146993483 G A ADGB Missense_Mutation p.E323K 0.11 tolerated(0.21) benign(0.047) TCGA-CA-6717-01 6 147022082 147022082 T G ADGB Missense_Mutation p.F528C 0.14 tolerated(0.1) possibly_damaging(0.471) TCGA-CA-6717-01 6 147103231 147103231 C A ADGB Missense_Mutation p.S1313Y 0.13 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 6 147122413 147122413 T C ADGB Silent p.V1544V 0.21 TCGA-CA-6717-01 6 147124488 147124488 C T ADGB Intron 0.14 TCGA-CA-6717-01 6 147560386 147560386 G A STXBP5 Silent p.S137S 0.08 TCGA-CA-6717-01 6 147635756 147635756 C T STXBP5 Silent p.F462F 0.12 TCGA-CA-6717-01 6 149718856 149718856 C T TAB2 Nonsense_Mutation p.R574* 0.22 TCGA-CA-6717-01 6 149722153 149722153 T C SUMO4 3'UTR 0.11 TCGA-CA-6717-01 6 149912040 149912040 T G GINM1 3'UTR 0.38 TCGA-CA-6717-01 6 150147383 150147383 C T LRP11 Intron 0.19 TCGA-CA-6717-01 6 150240626 150240626 T C RAET1G Intron 0.10 TCGA-CA-6717-01 6 150289761 150289761 A G ULBP1 Missense_Mutation p.Y35C 0.18 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 6 150289977 150289977 A G ULBP1 Missense_Mutation p.D107G 0.10 tolerated(0.14) benign(0.232) TCGA-CA-6717-01 6 150342174 150342174 T C RAET1L Silent p.R166R 0.12 TCGA-CA-6717-01 6 150386558 150386558 T A ULBP3 Missense_Mutation p.R202W 0.14 tolerated(1) benign(0.012) TCGA-CA-6717-01 6 151054781 151054781 G A PLEKHG1 5'UTR 0.36 TCGA-CA-6717-01 6 151152089 151152089 G A PLEKHG1 Silent p.E614E 0.15 TCGA-CA-6717-01 6 151161217 151161217 A G PLEKHG1 Missense_Mutation p.N1115D 0.09 tolerated_low_confidence(0.34) benign(0.001) TCGA-CA-6717-01 6 151281425 151281425 C T MTHFD1L Silent p.I606I 0.29 TCGA-CA-6717-01 6 151671050 151671050 A T AKAP12 Missense_Mutation p.R508S 0.15 deleterious(0) possibly_damaging(0.889) TCGA-CA-6717-01 6 151744741 151744741 C T RMND1 Missense_Mutation p.E286K 0.14 tolerated(0.11) possibly_damaging(0.792) TCGA-CA-6717-01 6 151754329 151754329 G T RMND1 Missense_Mutation p.S217Y 0.21 tolerated(0.26) possibly_damaging(0.713) TCGA-CA-6717-01 6 151766688 151766688 G A RMND1 Missense_Mutation p.R87C 0.08 tolerated_low_confidence(0.21) benign(0.002) TCGA-CA-6717-01 6 151775685 151775685 C A C6orf211 Nonsense_Mutation p.S15* 0.21 TCGA-CA-6717-01 6 152457940 152457940 G T SYNE1 Missense_Mutation p.A8491D 0.10 possibly_damaging(0.809) TCGA-CA-6717-01 6 152485333 152485333 A G SYNE1 Missense_Mutation p.S7919P 0.14 probably_damaging(0.919) TCGA-CA-6717-01 6 152523035 152523035 C T SYNE1 Missense_Mutation p.R7690Q 0.10 benign(0.208) TCGA-CA-6717-01 6 152523073 152523073 T - SYNE1 Frame_Shift_Del p.K7677Nfs*6 0.19 TCGA-CA-6717-01 6 152554981 152554981 G A SYNE1 Missense_Mutation p.R6883C 0.20 benign(0.001) TCGA-CA-6717-01 6 152557293 152557293 T G SYNE1 Missense_Mutation p.K6782T 0.10 benign(0.119) TCGA-CA-6717-01 6 152560706 152560706 C T SYNE1 Missense_Mutation p.A6677T 0.21 probably_damaging(0.997) TCGA-CA-6717-01 6 152560793 152560793 A C SYNE1 Missense_Mutation p.F6648V 0.12 benign(0.016) TCGA-CA-6717-01 6 152589202 152589202 A G SYNE1 Silent p.S6268S 0.08 TCGA-CA-6717-01 6 152615217 152615217 C A SYNE1 Missense_Mutation p.D5910Y 0.12 possibly_damaging(0.653) TCGA-CA-6717-01 6 152640073 152640073 A C SYNE1 Silent p.A5438A 0.09 TCGA-CA-6717-01 6 152642909 152642909 C A SYNE1 Nonsense_Mutation p.E5344* 0.10 TCGA-CA-6717-01 6 152644801 152644801 C T SYNE1 Silent p.S5243S 0.22 TCGA-CA-6717-01 6 152651013 152651013 G T SYNE1 Missense_Mutation p.S4936Y 0.09 probably_damaging(0.999) TCGA-CA-6717-01 6 152652399 152652399 C T SYNE1 Missense_Mutation p.R4474Q 0.14 benign(0.079) TCGA-CA-6717-01 6 152674826 152674826 A G SYNE1 Silent p.A3660A 0.22 TCGA-CA-6717-01 6 152679648 152679648 G T SYNE1 Missense_Mutation p.L3490I 0.09 benign(0.017) TCGA-CA-6717-01 6 152680477 152680477 T C SYNE1 Silent p.R3472R 0.08 TCGA-CA-6717-01 6 152697631 152697631 C T SYNE1 Missense_Mutation p.R3070Q 0.15 benign(0.006) TCGA-CA-6717-01 6 152706934 152706934 G T SYNE1 Missense_Mutation p.L2843I 0.11 probably_damaging(0.997) TCGA-CA-6717-01 6 152711581 152711581 G T SYNE1 Missense_Mutation p.L2671I 0.09 benign(0.04) TCGA-CA-6717-01 6 152717920 152717920 C A SYNE1 Nonsense_Mutation p.E2516* 0.15 TCGA-CA-6717-01 6 152717970 152717970 A C SYNE1 Missense_Mutation p.F2499C 0.07 benign(0.232) TCGA-CA-6717-01 6 152720901 152720901 G T SYNE1 Missense_Mutation p.L2363I 0.15 probably_damaging(0.948) TCGA-CA-6717-01 6 152737678 152737678 A C SYNE1 Missense_Mutation p.L1965R 0.11 possibly_damaging(0.836) TCGA-CA-6717-01 6 152737907 152737907 G C SYNE1 Missense_Mutation p.Q1889E 0.18 benign(0.001) TCGA-CA-6717-01 6 152754989 152754989 C A SYNE1 Nonsense_Mutation p.E1468* 0.18 TCGA-CA-6717-01 6 152762366 152762366 C A SYNE1 Nonsense_Mutation p.E1350* 0.13 TCGA-CA-6717-01 6 152772300 152772300 T G SYNE1 Missense_Mutation p.K1023T 0.08 probably_damaging(0.971) TCGA-CA-6717-01 6 152777035 152777035 G T SYNE1 Missense_Mutation p.H905N 0.21 benign(0.024) TCGA-CA-6717-01 6 152823852 152823852 C A SYNE1 Missense_Mutation p.E268D 0.23 possibly_damaging(0.656) TCGA-CA-6717-01 6 153042887 153042887 C A MYCT1 Silent p.I69I 0.26 TCGA-CA-6717-01 6 153296745 153296745 C A FBXO5 Nonsense_Mutation p.E39* 0.32 TCGA-CA-6717-01 6 153345609 153345609 C T RGS17 Missense_Mutation p.V78I 0.13 tolerated(0.33) benign(0.009) TCGA-CA-6717-01 6 154412275 154412275 C T OPRM1 Nonsense_Mutation p.R371* 0.22 TCGA-CA-6717-01 6 154429062 154429062 C T OPRM1 Intron 0.23 TCGA-CA-6717-01 6 154429106 154429106 T G OPRM1 Intron 0.15 TCGA-CA-6717-01 6 154754627 154754627 C T CNKSR3 Silent p.A174A 0.14 TCGA-CA-6717-01 6 155123145 155123145 A C SCAF8 Missense_Mutation p.K216T 0.18 deleterious(0.04) unknown(0) TCGA-CA-6717-01 6 155450458 155450458 G T TIAM2 Missense_Mutation p.G34V 0.23 deleterious_low_confidence(0) benign(0.097) TCGA-CA-6717-01 6 155574087 155574087 G A TIAM2 Silent p.S1375S 0.13 TCGA-CA-6717-01 6 155596890 155596890 C A CLDN20 Missense_Mutation p.L13M 0.09 deleterious(0.04) possibly_damaging(0.453) TCGA-CA-6717-01 6 155606310 155606310 A G TFB1M Silent p.A216A 0.25 TCGA-CA-6717-01 6 157256690 157256690 G T ARID1B Nonsense_Mutation p.E673* 0.09 TCGA-CA-6717-01 6 157739900 157739900 G A TMEM242 Nonsense_Mutation p.R81* 0.08 TCGA-CA-6717-01 6 158485718 158485718 C T SYNJ2 Missense_Mutation p.S432F 0.12 deleterious(0.01) possibly_damaging(0.615) TCGA-CA-6717-01 6 158565393 158565393 G A SERAC1 Nonsense_Mutation p.R183* 0.10 TCGA-CA-6717-01 6 158567918 158567918 T C SERAC1 Missense_Mutation p.D128G 0.24 deleterious(0.03) benign(0.341) TCGA-CA-6717-01 6 158910657 158910657 C T TULP4 Silent p.I508I 0.09 TCGA-CA-6717-01 6 159049469 159049469 C T TMEM181 Missense_Mutation p.A517V 0.19 tolerated(0.22) benign(0.284) TCGA-CA-6717-01 6 159653365 159653365 G A FNDC1 Silent p.Q607Q 0.15 TCGA-CA-6717-01 6 159682221 159682221 G T FNDC1 Splice_Site p.X1725_splice 0.11 TCGA-CA-6717-01 6 160113638 160113638 T C SOD2 Intron 0.12 TCGA-CA-6717-01 6 160113739 160113739 G C SOD2 Missense_Mutation p.N60K 0.08 deleterious(0) benign(0.373) TCGA-CA-6717-01 6 160174524 160174524 G A WTAP Missense_Mutation p.R162Q 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 6 160201508 160201508 C A TCP1 Missense_Mutation p.R355I 0.18 deleterious(0.03) benign(0.143) TCGA-CA-6717-01 6 160201996 160201996 T C TCP1 Missense_Mutation p.D315G 0.09 deleterious(0) probably_damaging(0.96) TCGA-CA-6717-01 6 160505080 160505080 A G IGF2R Missense_Mutation p.T1978A 0.12 tolerated(0.06) benign(0.057) TCGA-CA-6717-01 6 160664762 160664762 T C SLC22A2 Missense_Mutation p.D374G 0.19 tolerated(1) benign(0.002) TCGA-CA-6717-01 6 161015090 161015090 G A LPA Nonsense_Mutation p.R1177* 0.11 TCGA-CA-6717-01 6 161132217 161132217 G T PLG Missense_Mutation p.R134I 0.07 tolerated(0.41) benign(0.004) TCGA-CA-6717-01 6 1612635 1612635 G T FOXC1 3'UTR 0.21 TCGA-CA-6717-01 6 16130860 16130860 T G MYLIP Missense_Mutation p.L54V 0.53 tolerated(0.07) probably_damaging(0.993) TCGA-CA-6717-01 6 1613593 1613593 A C FOXC1 3'UTR 0.29 TCGA-CA-6717-01 6 161781147 161781147 G A PARK2 Missense_Mutation p.R420C 0.10 deleterious(0) probably_damaging(0.912) TCGA-CA-6717-01 6 161966294 161966294 A C PARK2 Intron 0.17 TCGA-CA-6717-01 6 162394374 162394374 T G PARK2 Missense_Mutation p.N232H 0.11 deleterious(0) possibly_damaging(0.678) TCGA-CA-6717-01 6 163235240 163235240 G A PACRG Missense_Mutation p.R73Q 0.26 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 6 163983103 163983103 T C QKI Splice_Site p.X212_splice 0.18 TCGA-CA-6717-01 6 163987774 163987774 G A QKI Missense_Mutation p.R319Q 0.21 tolerated(0.08) probably_damaging(0.99) TCGA-CA-6717-01 6 165693462 165693462 G T C6orf118 3'UTR 0.25 TCGA-CA-6717-01 6 165715665 165715665 T G C6orf118 Missense_Mutation p.Q49P 0.17 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 6 166576019 166576019 G C T Missense_Mutation p.H274D 0.09 deleterious(0.01) benign(0.206) TCGA-CA-6717-01 6 166743666 166743666 C T SFT2D1 Missense_Mutation p.V45I 0.19 tolerated(1) benign(0.001) TCGA-CA-6717-01 6 167416761 167416761 T G FGFR1OP Intron 0.39 TCGA-CA-6717-01 6 167717486 167717486 G T UNC93A Missense_Mutation p.E235D 0.22 tolerated(0.21) benign(0.003) TCGA-CA-6717-01 6 167754134 167754134 T A TTLL2 Missense_Mutation p.I249N 0.14 deleterious(0) possibly_damaging(0.767) TCGA-CA-6717-01 6 168265256 168265256 G T MLLT4 Missense_Mutation p.R44I 0.13 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 168265356 168265356 G T MLLT4 Missense_Mutation p.E77D 0.10 tolerated(0.07) probably_damaging(0.997) TCGA-CA-6717-01 6 168273002 168273002 G T MLLT4 Nonsense_Mutation p.E175* 0.14 TCGA-CA-6717-01 6 168291545 168291545 T G MLLT4 Missense_Mutation p.I338S 0.10 tolerated(0.85) benign(0.01) TCGA-CA-6717-01 6 169648748 169648748 C A THBS2 Missense_Mutation p.D125Y 0.18 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 6 169648968 169648968 G A THBS2 Silent p.G51G 0.22 TCGA-CA-6717-01 6 170103514 170103514 T G C6orf120 3'UTR 0.16 TCGA-CA-6717-01 6 170104577 170104577 T C C6orf120 3'UTR 0.30 TCGA-CA-6717-01 6 170105886 170105886 C A C6orf120 3'UTR 0.19 TCGA-CA-6717-01 6 170143214 170143214 T G TCTE3 Missense_Mutation p.K150Q 0.19 tolerated(0.24) benign(0.047) TCGA-CA-6717-01 6 170594487 170594487 T G DLL1 Missense_Mutation p.K296T 0.10 deleterious(0.03) benign(0.061) TCGA-CA-6717-01 6 170626532 170626532 T C FAM120B Silent p.C18C 0.11 TCGA-CA-6717-01 6 170627336 170627336 G T FAM120B Missense_Mutation p.E286D 0.12 tolerated(0.15) benign(0.026) TCGA-CA-6717-01 6 170627471 170627471 G A FAM120B Silent p.T331T 0.09 TCGA-CA-6717-01 6 170632309 170632309 G A FAM120B Missense_Mutation p.R626Q 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 170880504 170880504 G A TBP Silent p.E284E 0.09 TCGA-CA-6717-01 6 17421803 17421803 G A CAP2 Missense_Mutation p.G6E 0.19 tolerated(0.59) benign(0.062) TCGA-CA-6717-01 6 17772183 17772183 T C KIF13A Missense_Mutation p.K1478E 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-CA-6717-01 6 17804706 17804706 G T KIF13A Missense_Mutation p.F780L 0.13 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 6 18256011 18256011 A C DEK Missense_Mutation p.L175R 0.35 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 20152860 20152860 G A MBOAT1 Silent p.F80F 0.18 TCGA-CA-6717-01 6 24146562 24146562 C A NRSN1 3'UTR 0.40 TCGA-CA-6717-01 6 24291214 24291214 T C DCDC2 Missense_Mutation p.K217R 0.15 tolerated(0.13) benign(0.071) TCGA-CA-6717-01 6 24566874 24566874 C A KIAA0319 Missense_Mutation p.R748I 0.24 deleterious(0) benign(0.102) TCGA-CA-6717-01 6 24718827 24718828 - T C6orf62 Frame_Shift_Ins p.E24Rfs*5 0.18 TCGA-CA-6717-01 6 24832603 24832603 C A FAM65B Missense_Mutation p.S763I 0.10 deleterious(0.02) probably_damaging(0.921) TCGA-CA-6717-01 6 24843163 24843163 T G FAM65B Missense_Mutation p.E616A 0.18 deleterious(0.03) benign(0.046) TCGA-CA-6717-01 6 25093881 25093881 A C CMAHP RNA 0.10 TCGA-CA-6717-01 6 25495349 25495349 G T LRRC16A Nonsense_Mutation p.E411* 0.25 TCGA-CA-6717-01 6 25594646 25594646 T C LRRC16A Missense_Mutation p.C1004R 0.14 tolerated(0.5) benign(0) TCGA-CA-6717-01 6 25779541 25779541 G T SLC17A4 3'UTR 0.48 TCGA-CA-6717-01 6 25967063 25967063 G A TRIM38 Missense_Mutation p.E105K 0.08 tolerated(0.07) probably_damaging(0.918) TCGA-CA-6717-01 6 26017825 26017825 G A HIST1H1A Silent p.L46L 0.12 TCGA-CA-6717-01 6 26033510 26033510 T G HIST1H2AB Missense_Mutation p.K96T 0.16 deleterious_low_confidence(0.02) benign(0.437) TCGA-CA-6717-01 6 26092980 26092980 G T HFE Missense_Mutation p.L228F 0.18 deleterious(0.01) probably_damaging(0.93) TCGA-CA-6717-01 6 26157204 26157204 C G HIST1H1E Missense_Mutation p.P196A 0.09 tolerated(0.39) unknown(0) TCGA-CA-6717-01 6 26157297 26157297 T G HIST1H1E 3'UTR 0.08 TCGA-CA-6717-01 6 26234937 26234937 T G HIST1H1D Missense_Mutation p.E75D 0.11 tolerated(0.07) benign(0.442) TCGA-CA-6717-01 6 26375802 26375802 T C BTN3A2 Intron 0.09 TCGA-CA-6717-01 6 26385328 26385328 G T BTN2A2 Missense_Mutation p.E60D 0.10 tolerated(0.08) probably_damaging(0.977) TCGA-CA-6717-01 6 26459862 26459862 A C BTN2A1 Missense_Mutation p.K79T 0.41 deleterious(0.03) possibly_damaging(0.906) TCGA-CA-6717-01 6 26598578 26598578 T C ABT1 Missense_Mutation p.V175A 0.46 deleterious(0.01) probably_damaging(0.948) TCGA-CA-6717-01 6 26637499 26637499 G A ZNF322 3'UTR 0.10 TCGA-CA-6717-01 6 2680483 2680483 T G MYLK4 Missense_Mutation p.K244Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 27278576 27278576 G A POM121L2 Silent p.D458D 0.09 TCGA-CA-6717-01 6 27419521 27419521 C A ZNF184 Missense_Mutation p.R606I 0.46 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 6 27420639 27420639 A G ZNF184 Silent p.Y233Y 0.40 TCGA-CA-6717-01 6 27879037 27879037 C A OR2B2 Missense_Mutation p.R354I 0.16 tolerated_low_confidence(0.78) unknown(0) TCGA-CA-6717-01 6 28093264 28093264 A G ZSCAN16 Missense_Mutation p.I15V 0.16 tolerated(0.43) benign(0) TCGA-CA-6717-01 6 28097753 28097753 T C ZSCAN16 3'UTR 0.58 TCGA-CA-6717-01 6 28228564 28228564 A G NKAPL 3'UTR 0.40 TCGA-CA-6717-01 6 28228712 28228712 T G NKAPL 3'UTR 0.50 TCGA-CA-6717-01 6 28253436 28253436 A G PGBD1 Missense_Mutation p.K169E 0.16 tolerated_low_confidence(0.14) benign(0.003) TCGA-CA-6717-01 6 28294220 28294220 C A ZSCAN31 Missense_Mutation p.R315I 0.10 deleterious(0) possibly_damaging(0.593) TCGA-CA-6717-01 6 28501830 28501830 A C GPX5 Missense_Mutation p.E184D 0.09 deleterious(0.02) possibly_damaging(0.713) TCGA-CA-6717-01 6 28540423 28540423 A G SCAND3 Silent p.F1081F 0.14 TCGA-CA-6717-01 6 28541208 28541208 A G SCAND3 Silent p.L820L 0.23 TCGA-CA-6717-01 6 28541284 28541284 G T SCAND3 Missense_Mutation p.F794L 0.09 tolerated_low_confidence(0.07) probably_damaging(0.931) TCGA-CA-6717-01 6 28962972 28962972 G A ZNF311 Nonsense_Mutation p.R603* 0.15 TCGA-CA-6717-01 6 28963003 28963003 G A ZNF311 Silent p.F592F 0.53 TCGA-CA-6717-01 6 29231680 29231680 G T XXbac-BPG308J9.3 RNA 0.13 TCGA-CA-6717-01 6 29231750 29231750 G T XXbac-BPG308J9.3 RNA 0.26 TCGA-CA-6717-01 6 29323709 29323709 C A OR5V1 Missense_Mutation p.K88N 0.09 deleterious(0.04) benign(0.048) TCGA-CA-6717-01 6 29342977 29342977 A C OR12D3 Missense_Mutation p.L30V 0.10 deleterious(0.03) benign(0.408) TCGA-CA-6717-01 6 29343034 29343034 G T OR12D3 Missense_Mutation p.L11I 0.10 tolerated(1) benign(0.004) TCGA-CA-6717-01 6 29394863 29394863 C T OR11A1 Missense_Mutation p.V186M 0.17 tolerated(0.3) benign(0.105) TCGA-CA-6717-01 6 29429462 29429462 A C OR2H1 5'UTR 0.23 TCGA-CA-6717-01 6 29430314 29430314 C A OR2H1 Silent p.V256V 0.46 TCGA-CA-6717-01 6 29431657 29431657 T G OR2H1 3'UTR 0.15 TCGA-CA-6717-01 6 29454755 29454755 C T MAS1L Missense_Mutation p.A309T 0.13 tolerated(0.05) benign(0.01) TCGA-CA-6717-01 6 29455171 29455171 T C MAS1L Missense_Mutation p.E170G 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 29555939 29555939 C T OR2H2 Missense_Mutation p.T73M 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 29574944 29574944 A T GABBR1 Missense_Mutation p.F682I 0.13 deleterious(0) possibly_damaging(0.622) TCGA-CA-6717-01 6 29640653 29640653 T C ZFP57 Missense_Mutation p.N412S 0.10 tolerated(0.29) benign(0.027) TCGA-CA-6717-01 6 30124770 30124770 G A TRIM10 Missense_Mutation p.R281W 0.15 tolerated(0.14) probably_damaging(0.993) TCGA-CA-6717-01 6 30157242 30157242 A C TRIM26 Missense_Mutation p.F286C 0.34 deleterious(0) probably_damaging(0.931) TCGA-CA-6717-01 6 30308344 30308344 G A TRIM39 Missense_Mutation p.S319N 0.41 tolerated(0.21) benign(0.157) TCGA-CA-6717-01 6 30576585 30576585 G T PPP1R10 Missense_Mutation p.L101I 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-CA-6717-01 6 30595005 30595005 T G ATAT1 Missense_Mutation p.F9V 0.20 tolerated_low_confidence(0.26) benign(0) TCGA-CA-6717-01 6 30615410 30615410 G T C6orf136 Missense_Mutation p.E134D 0.14 deleterious_low_confidence(0.04) benign(0.011) TCGA-CA-6717-01 6 30672407 30672407 C T MDC1 Missense_Mutation p.R1518K 0.08 tolerated(0.1) benign(0.182) TCGA-CA-6717-01 6 30918184 30918184 C G DPCR1 Missense_Mutation p.T648R 0.07 tolerated(0.13) benign(0.001) TCGA-CA-6717-01 6 30954243 30954243 A C MUC21 Silent p.T97T 0.40 TCGA-CA-6717-01 6 30954532 30954532 A G MUC21 Missense_Mutation p.T194A 0.09 deleterious(0.01) unknown(0) TCGA-CA-6717-01 6 3104474 3104474 G A RIPK1 Missense_Mutation p.E311K 0.17 tolerated(0.07) benign(0) TCGA-CA-6717-01 6 31107522 31107522 C A PSORS1C1 Missense_Mutation p.S91Y 0.45 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-CA-6717-01 6 31132571 31132571 T C POU5F1 Missense_Mutation p.D297G 0.19 tolerated(0.09) possibly_damaging(0.539) TCGA-CA-6717-01 6 31132983 31132983 C A POU5F1 Missense_Mutation p.E246D 0.14 deleterious(0.04) benign(0.393) TCGA-CA-6717-01 6 31555025 31555025 G T LST1 5'UTR 0.12 TCGA-CA-6717-01 6 31583346 31583346 A G AIF1 Missense_Mutation p.D25G 0.09 tolerated(0.12) possibly_damaging(0.675) TCGA-CA-6717-01 6 31608607 31608607 T C BAG6 Missense_Mutation p.I936V 0.09 tolerated(0.2) possibly_damaging(0.651) TCGA-CA-6717-01 6 31628244 31628244 C A C6orf47 5'UTR 0.22 TCGA-CA-6717-01 6 31630345 31630345 T C GPANK1 Missense_Mutation p.S257G 0.14 deleterious(0.02) possibly_damaging(0.704) TCGA-CA-6717-01 6 31655048 31655048 C A ABHD16A Nonsense_Mutation p.E540* 0.10 TCGA-CA-6717-01 6 31741049 31741049 C T VWA7 Missense_Mutation p.R296Q 0.37 tolerated(0.07) benign(0.213) TCGA-CA-6717-01 6 31778303 31778303 C A HSPA1L Missense_Mutation p.D483Y 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-CA-6717-01 6 31779381 31779381 C T HSPA1L Silent p.S123S 0.08 TCGA-CA-6717-01 6 31828001 31828001 C T NEU1 Missense_Mutation p.R280Q 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 31895773 31895773 A G CFB Missense_Mutation p.I30V 0.11 deleterious(0.01) benign(0.001) TCGA-CA-6717-01 6 31918463 31918463 A G CFB Silent p.K1066K 0.10 TCGA-CA-6717-01 6 31918522 31918522 A C CFB Missense_Mutation p.N1086T 0.29 tolerated(0.28) benign(0) TCGA-CA-6717-01 6 31963520 31963520 G A C4A Missense_Mutation p.R1060Q 0.05 tolerated(0.52) possibly_damaging(0.459) TCGA-CA-6717-01 6 32014121 32014121 G A TNXB 5'Flank 0.13 TCGA-CA-6717-01 6 32015742 32015742 C A TNXB 5'Flank 0.22 TCGA-CA-6717-01 6 32032767 32032767 G T TNXB Missense_Mutation p.F2224L 0.15 probably_damaging(0.981) TCGA-CA-6717-01 6 32049993 32049993 A G RNA5SP206 5'Flank 0.18 TCGA-CA-6717-01 6 32056821 32056821 G A TNXB Silent p.I840I 0.09 TCGA-CA-6717-01 6 32084859 32084859 G A ATF6B Missense_Mutation p.P547L 0.43 tolerated(0.73) benign(0.008) TCGA-CA-6717-01 6 32172125 32172125 G A NOTCH4 Silent p.L969L 0.41 TCGA-CA-6717-01 6 32724191 32724191 G T HLA-DQB2 3'UTR 0.18 TCGA-CA-6717-01 6 32725078 32725078 G A HLA-DQB2 Missense_Mutation p.P217L 0.41 deleterious(0.02) benign(0.005) TCGA-CA-6717-01 6 32798155 32798155 C T TAP2 Silent p.G508G 0.17 TCGA-CA-6717-01 6 32800494 32800494 T G TAP2 Missense_Mutation p.E351D 0.15 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 6 32809441 32809441 C T PSMB8 Silent p.G203G 0.18 TCGA-CA-6717-01 6 32847199 32847199 G A PPP1R2P1 RNA 0.06 TCGA-CA-6717-01 6 32906548 32906548 C A HLA-DMB Missense_Mutation p.D84Y 0.12 deleterious(0.01) possibly_damaging(0.546) TCGA-CA-6717-01 6 32943171 32943171 A G BRD2 Missense_Mutation p.K115R 0.13 deleterious(0.01) possibly_damaging(0.763) TCGA-CA-6717-01 6 33132064 33132064 C A COL11A2 Nonsense_Mutation p.E1598* 0.34 TCGA-CA-6717-01 6 33237791 33237791 C A VPS52 Missense_Mutation p.K71N 0.14 tolerated(0.08) possibly_damaging(0.811) TCGA-CA-6717-01 6 33381525 33381525 A C PHF1 Missense_Mutation p.K200N 0.47 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 6 33424559 33424559 C A ZBTB9 3'UTR 0.14 TCGA-CA-6717-01 6 33541592 33541592 G T BAK1 Missense_Mutation p.F208L 0.10 tolerated(0.08) benign(0.334) TCGA-CA-6717-01 6 33690663 33690663 G A IP6K3 Missense_Mutation p.S356F 0.20 deleterious(0.02) possibly_damaging(0.532) TCGA-CA-6717-01 6 33690771 33690771 C T IP6K3 Missense_Mutation p.R320H 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 33768830 33768830 C T MLN Silent p.R37R 0.40 TCGA-CA-6717-01 6 34003483 34003483 T G GRM4 Missense_Mutation p.I802L 0.10 tolerated(0.35) benign(0.331) TCGA-CA-6717-01 6 34256677 34256677 G A NUDT3 Silent p.D124D 0.09 TCGA-CA-6717-01 6 34385268 34385268 G T RPS10 3'UTR 0.56 TCGA-CA-6717-01 6 34827213 34827213 A G UHRF1BP1 Missense_Mutation p.D1027G 0.14 tolerated(0.07) benign(0.008) TCGA-CA-6717-01 6 34949577 34949577 C T ANKS1A Silent p.F182F 0.10 TCGA-CA-6717-01 6 34962085 34962085 T C ANKS1A Missense_Mutation p.S437P 0.11 tolerated_low_confidence(0.25) benign(0.059) TCGA-CA-6717-01 6 35196416 35196416 T C SCUBE3 Silent p.D78D 0.10 TCGA-CA-6717-01 6 35554888 35554888 C A FKBP5 Nonsense_Mutation p.E255* 0.10 TCGA-CA-6717-01 6 35854545 35854545 A G SRPK1 Missense_Mutation p.V145A 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 6 35923294 35923294 G T SLC26A8 Missense_Mutation p.L623I 0.11 tolerated(0.38) benign(0.009) TCGA-CA-6717-01 6 35980079 35980079 G A SLC26A8 Nonsense_Mutation p.R87* 0.12 TCGA-CA-6717-01 6 36020603 36020603 A C MAPK14 Missense_Mutation p.N82H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 6 36168279 36168279 C A BRPF3 Silent p.I60I 0.11 TCGA-CA-6717-01 6 36181799 36181799 A C BRPF3 Missense_Mutation p.R875S 0.43 tolerated(0.4) benign(0.075) TCGA-CA-6717-01 6 36463548 36463548 C T STK38 3'UTR 0.12 TCGA-CA-6717-01 6 36824428 36824428 G A PPIL1 Nonsense_Mutation p.R72* 0.09 TCGA-CA-6717-01 6 37140900 37140900 G A PIM1 Missense_Mutation p.E246K 0.26 tolerated(0.06) benign(0.118) TCGA-CA-6717-01 6 37349065 37349065 A C RNF8 Missense_Mutation p.K459T 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 6 37430704 37430704 C T CMTR1 Silent p.S475S 0.15 TCGA-CA-6717-01 6 37441358 37441358 A C CMTR1 Missense_Mutation p.K601T 0.15 tolerated(0.39) benign(0.07) TCGA-CA-6717-01 6 37452967 37452967 C T CCDC167 Missense_Mutation p.D16N 0.35 deleterious(0.03) benign(0.271) TCGA-CA-6717-01 6 38160363 38160363 A G BTBD9 Missense_Mutation p.S525P 0.14 tolerated(0.21) possibly_damaging(0.674) TCGA-CA-6717-01 6 38650585 38650585 G A GLO1 Silent p.F125F 0.47 TCGA-CA-6717-01 6 38743596 38743596 G T DNAH8 Missense_Mutation p.D394Y 0.15 probably_damaging(0.98) TCGA-CA-6717-01 6 38747776 38747776 G T DNAH8 Nonsense_Mutation p.E475* 0.13 TCGA-CA-6717-01 6 38825397 38825397 T G DNAH8 Missense_Mutation p.F1729C 0.22 probably_damaging(0.986) TCGA-CA-6717-01 6 38828363 38828363 T G DNAH8 Missense_Mutation p.L1813R 0.18 probably_damaging(0.997) TCGA-CA-6717-01 6 38843445 38843445 T G DNAH8 Missense_Mutation p.F2350V 0.16 benign(0.186) TCGA-CA-6717-01 6 38854775 38854775 T G DNAH8 Missense_Mutation p.I2606S 0.12 probably_damaging(0.993) TCGA-CA-6717-01 6 38874146 38874146 T A DNAH8 Missense_Mutation p.F2887Y 0.09 probably_damaging(1) TCGA-CA-6717-01 6 38889250 38889250 G A DNAH8 Missense_Mutation p.A3327T 0.18 probably_damaging(0.954) TCGA-CA-6717-01 6 38893981 38893981 T G DNAH8 Missense_Mutation p.L3488V 0.30 probably_damaging(0.995) TCGA-CA-6717-01 6 38899713 38899713 A G DNAH8 Missense_Mutation p.T3584A 0.09 probably_damaging(0.976) TCGA-CA-6717-01 6 38906756 38906756 T G DNAH8 Missense_Mutation p.L3783R 0.19 probably_damaging(0.933) TCGA-CA-6717-01 6 38941488 38941488 G T DNAH8 Nonsense_Mutation p.E3976* 0.10 TCGA-CA-6717-01 6 38950163 38950163 C T DNAH8 Silent p.Y4075Y 0.41 TCGA-CA-6717-01 6 38950227 38950227 G A DNAH8 Missense_Mutation p.D4097N 0.09 benign(0.126) TCGA-CA-6717-01 6 38980357 38980357 G T DNAH8 Missense_Mutation p.W4336L 0.14 probably_damaging(1) TCGA-CA-6717-01 6 39507857 39507857 G A KIF6 Nonsense_Mutation p.R523* 0.09 TCGA-CA-6717-01 6 39513440 39513440 A C KIF6 Missense_Mutation p.F402L 0.39 deleterious(0) benign(0.13) TCGA-CA-6717-01 6 39554175 39554175 G T KIF6 Silent p.I284I 0.39 TCGA-CA-6717-01 6 39563862 39563862 A C KIF6 Missense_Mutation p.Y272D 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 6 39563985 39563985 A C KIF6 Missense_Mutation p.L231V 0.21 tolerated(0.28) benign(0.173) TCGA-CA-6717-01 6 39869135 39869135 T G DAAM2 Missense_Mutation p.F957V 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 6 39876832 39876832 G A MOCS1 Silent p.I383I 0.11 TCGA-CA-6717-01 6 4032030 4032030 T A PRPF4B Silent p.S93S 0.10 TCGA-CA-6717-01 6 40359836 40359836 G A LRFN2 Missense_Mutation p.P739L 0.20 tolerated(0.67) benign(0.005) TCGA-CA-6717-01 6 4044191 4044191 A C PRPF4B Missense_Mutation p.N599H 0.08 deleterious(0) unknown(0) TCGA-CA-6717-01 6 4074896 4074896 C A FAM217A Splice_Site p.X21_splice 0.24 TCGA-CA-6717-01 6 407568 407568 A G IRF4 Silent p.R442R 0.10 TCGA-CA-6717-01 6 41002622 41002622 G A UNC5CL Silent p.V64V 0.34 TCGA-CA-6717-01 6 41037817 41037817 A C OARD1 Missense_Mutation p.L81V 0.09 deleterious(0) possibly_damaging(0.577) TCGA-CA-6717-01 6 41739090 41739090 G A FRS3 Missense_Mutation p.A249V 0.32 tolerated(0.83) benign(0.012) TCGA-CA-6717-01 6 41756984 41756984 A G TOMM6 Missense_Mutation p.N48S 0.38 tolerated(0.11) benign(0.005) TCGA-CA-6717-01 6 42044845 42044845 C A TAF8 Missense_Mutation p.S263Y 0.08 deleterious(0.04) benign(0.116) TCGA-CA-6717-01 6 42178309 42178309 G A MRPS10 Nonsense_Mutation p.R117* 0.11 TCGA-CA-6717-01 6 42224491 42224491 A C TRERF1 Missense_Mutation p.L852R 0.18 deleterious(0) possibly_damaging(0.766) TCGA-CA-6717-01 6 42620257 42620257 C A UBR2 Missense_Mutation p.F881L 0.10 tolerated(0.39) benign(0.004) TCGA-CA-6717-01 6 42975737 42975737 G A PPP2R5D Missense_Mutation p.R264H 0.47 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 43025881 43025881 A C MRPL2 Missense_Mutation p.F63V 0.20 tolerated(0.55) benign(0.001) TCGA-CA-6717-01 6 43181524 43181524 C T CUL9 Silent p.Y1854Y 0.38 TCGA-CA-6717-01 6 43305257 43305257 G T ZNF318 Missense_Mutation p.S2160Y 0.45 possibly_damaging(0.807) TCGA-CA-6717-01 6 43316179 43316179 G A ZNF318 Silent p.F985F 0.11 TCGA-CA-6717-01 6 43413490 43413490 T C ABCC10 Missense_Mutation p.S1062P 0.17 deleterious(0.01) possibly_damaging(0.46) TCGA-CA-6717-01 6 43420870 43420870 A C DLK2 Missense_Mutation p.C48W 0.27 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 6 43470461 43470461 G A TJAP1 Intron 0.20 TCGA-CA-6717-01 6 43474895 43474895 C T LRRC73 3'UTR 0.39 TCGA-CA-6717-01 6 43536468 43536468 C T XPO5 Missense_Mutation p.D210N 0.37 tolerated(0.23) benign(0.331) TCGA-CA-6717-01 6 44140778 44140778 C A CAPN11 Missense_Mutation p.F210L 0.39 deleterious(0) probably_damaging(0.949) TCGA-CA-6717-01 6 44147727 44147727 C A CAPN11 Missense_Mutation p.F489L 0.43 deleterious(0.01) benign(0.221) TCGA-CA-6717-01 6 44218914 44218914 A G HSP90AB1 Missense_Mutation p.M363V 0.15 deleterious(0.02) benign(0.059) TCGA-CA-6717-01 6 44228214 44228214 G A NFKBIE Missense_Mutation p.R391W 0.11 deleterious(0) possibly_damaging(0.773) TCGA-CA-6717-01 6 44247987 44247987 C A TCTE1 Missense_Mutation p.Q479H 0.12 tolerated(0.11) possibly_damaging(0.825) TCGA-CA-6717-01 6 44255451 44255451 A C TCTE1 Missense_Mutation p.S38A 0.21 tolerated(0.78) benign(0.016) TCGA-CA-6717-01 6 44336129 44336129 G T SPATS1 Missense_Mutation p.R196S 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 44344818 44344818 A C SPATS1 3'UTR 0.17 TCGA-CA-6717-01 6 44397487 44397487 A C CDC5L Missense_Mutation p.K644T 0.10 deleterious(0.02) benign(0.403) TCGA-CA-6717-01 6 45909345 45909345 G A CLIC5 Silent p.G274G 0.12 TCGA-CA-6717-01 6 46563780 46563780 G A CYP39A1 Missense_Mutation p.R337C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 46598796 46598796 T G CYP39A1 Missense_Mutation p.Q248H 0.15 deleterious(0.04) possibly_damaging(0.451) TCGA-CA-6717-01 6 46632542 46632542 A C SLC25A27 Missense_Mutation p.I180L 0.09 tolerated(0.23) benign(0.282) TCGA-CA-6717-01 6 46657458 46657458 T C TDRD6 Silent p.D531D 0.25 TCGA-CA-6717-01 6 46658120 46658120 T C TDRD6 Missense_Mutation p.M752T 0.09 tolerated(0.76) benign(0) TCGA-CA-6717-01 6 46672122 46672122 G A PLA2G7 3'UTR 0.50 TCGA-CA-6717-01 6 46684251 46684251 A G PLA2G7 Silent p.R82R 0.13 TCGA-CA-6717-01 6 46800832 46800832 A C MEP1A Missense_Mutation p.K389T 0.13 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 6 46801039 46801039 G A MEP1A Missense_Mutation p.R458Q 0.22 tolerated(0.05) probably_damaging(0.975) TCGA-CA-6717-01 6 46826907 46826907 C A GPR116 Missense_Mutation p.Q911H 0.11 tolerated(0.06) possibly_damaging(0.572) TCGA-CA-6717-01 6 46977300 46977300 C T GPR110 Missense_Mutation p.R624H 0.12 tolerated(1) benign(0) TCGA-CA-6717-01 6 47471073 47471073 G A CD2AP Missense_Mutation p.R21Q 0.09 deleterious(0.02) benign(0.104) TCGA-CA-6717-01 6 47471132 47471132 G T CD2AP Nonsense_Mutation p.E41* 0.17 TCGA-CA-6717-01 6 47649054 47649054 G A GPR111 Nonsense_Mutation p.W253* 0.22 TCGA-CA-6717-01 6 47680295 47680295 A C GPR115 Missense_Mutation p.K168T 0.11 deleterious(0.04) possibly_damaging(0.701) TCGA-CA-6717-01 6 47776030 47776030 G A OPN5 Silent p.A299A 0.25 TCGA-CA-6717-01 6 47976628 47976628 A C PTCHD4 Missense_Mutation p.L217V 0.12 tolerated(0.51) probably_damaging(0.987) TCGA-CA-6717-01 6 49485213 49485213 G A GLYATL3 Missense_Mutation p.R86Q 0.22 tolerated(1) benign(0.005) TCGA-CA-6717-01 6 49585820 49585820 G T RHAG Missense_Mutation p.F151L 0.50 tolerated(1) benign(0.002) TCGA-CA-6717-01 6 49698944 49698944 A G CRISP3 Missense_Mutation p.L204P 0.13 tolerated(0.18) benign(0.018) TCGA-CA-6717-01 6 49704179 49704179 C T CRISP3 Silent p.V61V 0.13 TCGA-CA-6717-01 6 49754389 49754389 C A PGK2 Missense_Mutation p.R171L 0.09 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 6 49803124 49803124 C T CRISP1 Missense_Mutation p.D219N 0.24 tolerated(1) benign(0.011) TCGA-CA-6717-01 6 49936497 49936497 T G DEFB113 Missense_Mutation p.S48R 0.08 deleterious_low_confidence(0.01) benign(0.128) TCGA-CA-6717-01 6 50811081 50811081 C T TFAP2B Silent p.D453D 0.18 TCGA-CA-6717-01 6 5086733 5086733 C A PPP1R3G Nonsense_Mutation p.Y338* 0.58 TCGA-CA-6717-01 6 51524471 51524471 G T PKHD1 Missense_Mutation p.L3485I 0.21 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 51613141 51613141 G A PKHD1 Silent p.L3091L 0.10 TCGA-CA-6717-01 6 51908510 51908510 C A PKHD1 Missense_Mutation p.D912Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 6 51910973 51910973 T G PKHD1 Missense_Mutation p.Q807H 0.09 tolerated(1) benign(0) TCGA-CA-6717-01 6 52103564 52103564 T C IL17F Missense_Mutation p.N73S 0.27 tolerated(0.11) benign(0.004) TCGA-CA-6717-01 6 52103647 52103647 C A IL17F Missense_Mutation p.E45D 0.30 tolerated(0.69) benign(0) TCGA-CA-6717-01 6 52269364 52269364 A C PAQR8 3'UTR 0.15 TCGA-CA-6717-01 6 52271623 52271623 A C PAQR8 3'UTR 0.16 TCGA-CA-6717-01 6 52272444 52272444 A C PAQR8 3'UTR 0.12 TCGA-CA-6717-01 6 52318900 52318900 G A EFHC1 Missense_Mutation p.R244Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 6 52367906 52367906 G C TRAM2 3'UTR 0.17 TCGA-CA-6717-01 6 52372414 52372414 A C TRAM2 Missense_Mutation p.I188S 0.13 deleterious(0) benign(0.366) TCGA-CA-6717-01 6 52617713 52617713 T C GSTA2 Missense_Mutation p.D118G 0.15 tolerated(0.12) benign(0.008) TCGA-CA-6717-01 6 52657749 52657749 T C GSTA1 Missense_Mutation p.N151D 0.12 tolerated(0.08) possibly_damaging(0.604) TCGA-CA-6717-01 6 52698949 52698949 G A GSTA5 Missense_Mutation p.A135V 0.11 tolerated(1) benign(0.129) TCGA-CA-6717-01 6 52993147 52993147 G T GCM1 Missense_Mutation p.L390I 0.10 tolerated(0.12) benign(0.396) TCGA-CA-6717-01 6 53139991 53139991 G A ELOVL5 Silent p.I158I 0.09 TCGA-CA-6717-01 6 532500 532500 A C EXOC2 Nonsense_Mutation p.Y783* 0.11 TCGA-CA-6717-01 6 53519468 53519468 T G KLHL31 Missense_Mutation p.E201D 0.13 tolerated(0.29) benign(0.078) TCGA-CA-6717-01 6 53520026 53520026 G T KLHL31 Silent p.I15I 0.18 TCGA-CA-6717-01 6 53743793 53743793 A C LRRC1 Missense_Mutation p.I94L 0.12 deleterious(0.02) possibly_damaging(0.644) TCGA-CA-6717-01 6 53883756 53883756 G A MLIP 5'UTR 0.11 TCGA-CA-6717-01 6 54013922 54013922 G T MLIP Missense_Mutation p.Q227H 0.20 deleterious(0.02) probably_damaging(0.977) TCGA-CA-6717-01 6 54095670 54095670 A G MLIP Silent p.E424E 0.11 TCGA-CA-6717-01 6 54208098 54208098 C T TINAG Silent p.G233G 0.17 TCGA-CA-6717-01 6 54216168 54216168 G T TINAG Nonsense_Mutation p.E367* 0.24 TCGA-CA-6717-01 6 54735453 54735453 G T FAM83B Nonsense_Mutation p.E137* 0.29 TCGA-CA-6717-01 6 55128616 55128616 G A HCRTR2 Missense_Mutation p.R253Q 0.15 tolerated(0.49) benign(0.028) TCGA-CA-6717-01 6 55214908 55214908 A C GFRAL Missense_Mutation p.K112T 0.08 deleterious(0.02) benign(0.01) TCGA-CA-6717-01 6 55620305 55620305 T G BMP5 3'UTR 0.15 TCGA-CA-6717-01 6 56044671 56044671 C A COL21A1 Missense_Mutation p.K115N 0.18 tolerated(0.35) benign(0.006) TCGA-CA-6717-01 6 56044802 56044802 T C COL21A1 Missense_Mutation p.K72E 0.15 tolerated(0.12) probably_damaging(0.932) TCGA-CA-6717-01 6 56373330 56373330 T C DST Silent p.A3789A 0.17 TCGA-CA-6717-01 6 56434755 56434755 T C DST Missense_Mutation p.K1970E 0.14 benign(0.001) TCGA-CA-6717-01 6 56436904 56436904 T G DST Missense_Mutation p.K1949T 0.31 benign(0.056) TCGA-CA-6717-01 6 56437669 56437669 G T DST Missense_Mutation p.T1854N 0.18 benign(0.005) TCGA-CA-6717-01 6 56462687 56462687 C A DST Nonsense_Mutation p.E1393* 0.28 TCGA-CA-6717-01 6 56463468 56463468 C A DST Missense_Mutation p.A1289S 0.29 benign(0.023) TCGA-CA-6717-01 6 56466384 56466384 G T DST Intron 0.18 TCGA-CA-6717-01 6 56466462 56466462 C A DST Intron 0.11 TCGA-CA-6717-01 6 56468107 56468107 C A DST Intron 0.27 TCGA-CA-6717-01 6 56472196 56472196 G T DST Intron 0.11 TCGA-CA-6717-01 6 56483106 56483106 G A DST Intron 0.10 TCGA-CA-6717-01 6 56483456 56483456 A G DST Intron 0.20 TCGA-CA-6717-01 6 56485066 56485066 G T DST Intron 0.08 TCGA-CA-6717-01 6 56492072 56492072 T C DST Missense_Mutation p.E1014G 0.13 possibly_damaging(0.823) TCGA-CA-6717-01 6 56504149 56504149 C A DST Nonsense_Mutation p.E421* 0.15 TCGA-CA-6717-01 6 56566757 56566757 C A DST Nonsense_Mutation p.E84* 0.15 TCGA-CA-6717-01 6 56765255 56765255 A C DST Missense_Mutation p.F127L 0.11 deleterious_low_confidence(0) benign(0.001) TCGA-CA-6717-01 6 56857281 56857281 A C BEND6 Missense_Mutation p.S76R 0.09 deleterious_low_confidence(0.01) benign(0) TCGA-CA-6717-01 6 56911512 56911512 G A KIAA1586 5'UTR 0.20 TCGA-CA-6717-01 6 56919479 56919479 G T KIAA1586 Missense_Mutation p.D728Y 0.19 deleterious(0.01) possibly_damaging(0.447) TCGA-CA-6717-01 6 57015685 57015685 G T ZNF451 Intron 0.20 TCGA-CA-6717-01 6 57058725 57058725 C T RAB23 Silent p.K163K 0.20 TCGA-CA-6717-01 6 57059627 57059627 T G RAB23 Missense_Mutation p.K141T 0.16 deleterious(0.03) benign(0.43) TCGA-CA-6717-01 6 57072499 57072499 T G RAB23 Missense_Mutation p.E56D 0.33 tolerated(0.11) benign(0.033) TCGA-CA-6717-01 6 6002670 6002670 G A NRN1 Missense_Mutation p.S39L 0.40 deleterious(0) probably_damaging(0.966) TCGA-CA-6717-01 6 62442601 62442601 C T KHDRBS2 Silent p.A293A 0.10 TCGA-CA-6717-01 6 62887109 62887109 G A KHDRBS2 Missense_Mutation p.P67L 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 63990442 63990442 C T LGSN Silent p.T338T 0.17 TCGA-CA-6717-01 6 64395212 64395212 G A PHF3 Missense_Mutation p.R530Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 64395276 64395276 A C PHF3 Missense_Mutation p.Q551H 0.19 tolerated(0.15) benign(0.247) TCGA-CA-6717-01 6 64431397 64431397 A C EYS Missense_Mutation p.F2844V 0.19 deleterious(0.02) possibly_damaging(0.643) TCGA-CA-6717-01 6 64488050 64488050 G A EYS Missense_Mutation p.R2583C 0.22 deleterious(0) benign(0.296) TCGA-CA-6717-01 6 64694358 64694358 C T EYS Missense_Mutation p.A2325T 0.20 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 6 65146127 65146127 A C EYS Missense_Mutation p.F1956C 0.11 deleterious(0.01) benign(0.178) TCGA-CA-6717-01 6 65300636 65300636 G A EYS Silent p.G1708G 0.08 TCGA-CA-6717-01 6 65301436 65301436 A C EYS Missense_Mutation p.S1442A 0.09 deleterious(0.01) possibly_damaging(0.801) TCGA-CA-6717-01 6 65301537 65301537 G A EYS Missense_Mutation p.S1408F 0.19 tolerated_low_confidence(0.07) probably_damaging(0.955) TCGA-CA-6717-01 6 65301640 65301640 G A EYS Nonsense_Mutation p.R1374* 0.19 TCGA-CA-6717-01 6 65327339 65327339 G A EYS Missense_Mutation p.S1219L 0.21 tolerated(0.64) benign(0.003) TCGA-CA-6717-01 6 65532703 65532703 T G EYS Missense_Mutation p.E1002A 0.10 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 6 65612093 65612093 A C EYS Missense_Mutation p.F920C 0.10 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 6 66094360 66094360 C A EYS Missense_Mutation p.E406D 0.20 tolerated(0.08) benign(0.023) TCGA-CA-6717-01 6 66115178 66115178 A C EYS Silent p.A315A 0.10 TCGA-CA-6717-01 6 66204609 66204609 C A EYS Missense_Mutation p.R232I 0.13 tolerated(0.4) benign(0.178) TCGA-CA-6717-01 6 69349078 69349078 T G BAI3 Missense_Mutation p.L171V 0.14 deleterious(0) probably_damaging(0.931) TCGA-CA-6717-01 6 69640514 69640514 G T BAI3 Missense_Mutation p.R274M 0.14 deleterious(0.03) benign(0.254) TCGA-CA-6717-01 6 69684727 69684727 C G BAI3 Missense_Mutation p.A533G 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-CA-6717-01 6 69703753 69703753 A C BAI3 Missense_Mutation p.N610H 0.12 deleterious(0.01) benign(0.015) TCGA-CA-6717-01 6 69759189 69759189 C A BAI3 Missense_Mutation p.L762I 0.12 tolerated(1) probably_damaging(0.994) TCGA-CA-6717-01 6 70049230 70049230 C A BAI3 Missense_Mutation p.S1098Y 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-CA-6717-01 6 70423616 70423616 A C LMBRD1 Missense_Mutation p.L279R 0.14 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 6 70847584 70847584 C T COL19A1 Missense_Mutation p.T464I 0.12 tolerated(0.24) benign(0.039) TCGA-CA-6717-01 6 70890209 70890209 A G COL19A1 Silent p.K891K 0.24 TCGA-CA-6717-01 6 71004056 71004056 C T COL9A1 Silent p.S170S 0.14 TCGA-CA-6717-01 6 71004266 71004266 C A COL9A1 Missense_Mutation p.R100S 0.27 unknown(0) TCGA-CA-6717-01 6 71235046 71235046 T G FAM135A Missense_Mutation p.I753M 0.31 deleterious(0) benign(0.444) TCGA-CA-6717-01 6 71603972 71603972 G A B3GAT2 Nonsense_Mutation p.R199* 0.10 TCGA-CA-6717-01 6 72943542 72943542 C T RIMS1 Missense_Mutation p.S582L 0.20 tolerated(0.66) probably_damaging(0.968) TCGA-CA-6717-01 6 72960628 72960628 A C RIMS1 Missense_Mutation p.K793Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 6 7310233 7310233 C A SSR1 Nonsense_Mutation p.E37* 0.09 TCGA-CA-6717-01 6 73107965 73107965 G T RIMS1 Nonsense_Mutation p.G1545* 0.15 TCGA-CA-6717-01 6 7373517 7373517 A C CAGE1 Missense_Mutation p.L512W 0.10 deleterious(0) probably_damaging(0.938) TCGA-CA-6717-01 6 73834218 73834218 A C KCNQ5 Missense_Mutation p.Q410H 0.12 deleterious(0.03) benign(0.2) TCGA-CA-6717-01 6 73843258 73843258 C A KCNQ5 Silent p.A473A 0.19 TCGA-CA-6717-01 6 73933896 73933896 G A KHDC1L Silent p.H96H 0.24 TCGA-CA-6717-01 6 73935080 73935080 C T KHDC1L Missense_Mutation p.E18K 0.23 deleterious(0.01) benign(0.086) TCGA-CA-6717-01 6 7396979 7396979 A C RIOK1 Missense_Mutation p.E137D 0.08 tolerated(0.11) benign(0.083) TCGA-CA-6717-01 6 74063669 74063669 C T DPPA5 Missense_Mutation p.E67K 0.25 tolerated(0.13) benign(0.118) TCGA-CA-6717-01 6 74072909 74072909 C A KHDC3L Silent p.I87I 0.18 TCGA-CA-6717-01 6 74117334 74117334 C T DDX43 Missense_Mutation p.R345W 0.12 deleterious(0) probably_damaging(0.967) TCGA-CA-6717-01 6 74201964 74201964 G A MTO1 Missense_Mutation p.D589N 0.27 deleterious(0.02) probably_damaging(0.918) TCGA-CA-6717-01 6 74346406 74346406 G T SLC17A5 Missense_Mutation p.S213Y 0.18 deleterious(0) possibly_damaging(0.806) TCGA-CA-6717-01 6 74432991 74432991 A G CD109 Missense_Mutation p.T89A 0.20 tolerated(0.07) benign(0.066) TCGA-CA-6717-01 6 74440224 74440224 A G CD109 Missense_Mutation p.E145G 0.10 tolerated(0.12) benign(0.033) TCGA-CA-6717-01 6 74475865 74475865 G A CD109 Silent p.E440E 0.22 TCGA-CA-6717-01 6 74477910 74477910 A C CD109 Missense_Mutation p.S544R 0.09 deleterious(0) benign(0.094) TCGA-CA-6717-01 6 74524770 74524770 G A CD109 Missense_Mutation p.E1279K 0.21 tolerated(0.07) benign(0.033) TCGA-CA-6717-01 6 7565676 7565676 G T DSP Missense_Mutation p.D288Y 0.21 probably_damaging(0.999) TCGA-CA-6717-01 6 75822947 75822947 C A COL12A1 Missense_Mutation p.K2641N 0.28 probably_damaging(0.996) TCGA-CA-6717-01 6 7582903 7582903 A C DSP Missense_Mutation p.N1803T 0.13 benign(0.001) TCGA-CA-6717-01 6 7584978 7584978 G T DSP Nonsense_Mutation p.E2495* 0.22 TCGA-CA-6717-01 6 75853041 75853041 A C COL12A1 Missense_Mutation p.F1585C 0.14 benign(0.331) TCGA-CA-6717-01 6 75884933 75884933 T C COL12A1 Missense_Mutation p.Y844C 0.19 probably_damaging(0.974) TCGA-CA-6717-01 6 7594393 7594393 G T SNRNP48 Splice_Site p.X111_splice 0.08 TCGA-CA-6717-01 6 76022420 76022420 T A FILIP1 Missense_Mutation p.K1043I 0.10 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 6 76022569 76022569 T G FILIP1 Missense_Mutation p.E993D 0.08 tolerated(0.45) benign(0.003) TCGA-CA-6717-01 6 76024467 76024467 C A FILIP1 Nonsense_Mutation p.E361* 0.07 TCGA-CA-6717-01 6 7609100 7609100 A C SNRNP48 Missense_Mutation p.K338N 0.10 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-CA-6717-01 6 76343307 76343307 G A SENP6 Missense_Mutation p.R73Q 0.19 tolerated(0.31) benign(0.001) TCGA-CA-6717-01 6 76412617 76412617 C A SENP6 Missense_Mutation p.R849S 0.10 tolerated(0.98) benign(0.061) TCGA-CA-6717-01 6 76572317 76572317 A G MYO6 Silent p.L517L 0.12 TCGA-CA-6717-01 6 76595778 76595778 G A MYO6 Missense_Mutation p.R825Q 0.08 deleterious(0) unknown(0) TCGA-CA-6717-01 6 76608090 76608090 G A MYO6 Silent p.P1046P 0.19 TCGA-CA-6717-01 6 76660319 76660319 G T IMPG1 Missense_Mutation p.S595Y 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 76715134 76715134 G T IMPG1 Silent p.V335V 0.11 TCGA-CA-6717-01 6 76715225 76715225 G A IMPG1 Missense_Mutation p.T305M 0.21 tolerated(0.64) benign(0.023) TCGA-CA-6717-01 6 78172172 78172172 C A HTR1B Missense_Mutation p.G317W 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 79650885 79650885 T G PHIP Missense_Mutation p.K1664T 0.17 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-CA-6717-01 6 79727098 79727098 T G PHIP Missense_Mutation p.K367N 0.22 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 6 79770286 79770286 C G PHIP Missense_Mutation p.K116N 0.23 deleterious(0.04) benign(0.04) TCGA-CA-6717-01 6 79770387 79770387 T G PHIP Missense_Mutation p.K113T 0.11 deleterious(0) probably_damaging(0.932) TCGA-CA-6717-01 6 8097576 8097576 A G EEF1E1 Missense_Mutation p.V71A 0.07 tolerated(0.05) possibly_damaging(0.792) TCGA-CA-6717-01 6 83767641 83767641 C T UBE3D Missense_Mutation p.E60K 0.25 tolerated(0.16) possibly_damaging(0.601) TCGA-CA-6717-01 6 83806688 83806688 T C DOPEY1 5'UTR 0.17 TCGA-CA-6717-01 6 83838934 83838934 A C DOPEY1 Missense_Mutation p.Q683P 0.12 deleterious(0.03) possibly_damaging(0.557) TCGA-CA-6717-01 6 83847908 83847908 T C DOPEY1 Missense_Mutation p.Y1383H 0.22 tolerated(0.24) benign(0.008) TCGA-CA-6717-01 6 83855273 83855273 T G DOPEY1 Missense_Mutation p.L1858V 0.15 tolerated(1) benign(0.001) TCGA-CA-6717-01 6 84117521 84117521 T G ME1 Missense_Mutation p.K60Q 0.11 tolerated(0.47) benign(0) TCGA-CA-6717-01 6 84233464 84233464 G T PRSS35 Missense_Mutation p.D102Y 0.21 deleterious(0.02) possibly_damaging(0.526) TCGA-CA-6717-01 6 84233481 84233481 G A PRSS35 Silent p.P107P 0.23 TCGA-CA-6717-01 6 84234649 84234649 A C PRSS35 3'UTR 0.20 TCGA-CA-6717-01 6 84234704 84234704 A G PRSS35 3'UTR 0.18 TCGA-CA-6717-01 6 84317478 84317478 G T SNAP91 Missense_Mutation p.T321N 0.15 deleterious(0) unknown(0) TCGA-CA-6717-01 6 84799070 84799070 A C MRAP2 Missense_Mutation p.K163T 0.10 tolerated(0.06) benign(0.005) TCGA-CA-6717-01 6 85457773 85457773 C T TBX18 Silent p.P268P 0.09 TCGA-CA-6717-01 6 85466441 85466441 T C TBX18 Missense_Mutation p.N249S 0.12 deleterious(0.01) probably_damaging(0.943) TCGA-CA-6717-01 6 85473831 85473831 C T TBX18 Silent p.E23E 0.10 TCGA-CA-6717-01 6 86201801 86201801 G T NT5E Missense_Mutation p.M489I 0.16 tolerated(0.19) benign(0.063) TCGA-CA-6717-01 6 86267749 86267749 T G SNX14 Missense_Mutation p.K193N 0.09 deleterious(0) probably_damaging(0.976) TCGA-CA-6717-01 6 86350180 86350180 T C SYNCRIP Missense_Mutation p.D84G 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6717-01 6 87726284 87726284 T G HTR1E 3'UTR 0.16 TCGA-CA-6717-01 6 87968053 87968053 T C ZNF292 Missense_Mutation p.V1569A 0.10 tolerated_low_confidence(0.1) benign(0.003) TCGA-CA-6717-01 6 87968338 87968338 T C ZNF292 Missense_Mutation p.I1664T 0.08 deleterious_low_confidence(0.05) benign(0.008) TCGA-CA-6717-01 6 87970985 87970985 A C ZNF292 Missense_Mutation p.K2546N 0.09 deleterious(0.01) possibly_damaging(0.881) TCGA-CA-6717-01 6 87971299 87971299 T G ZNF292 Missense_Mutation p.F2651C 0.16 tolerated(0.29) possibly_damaging(0.827) TCGA-CA-6717-01 6 88136249 88136249 T C C6ORF165 Silent p.D282D 0.22 TCGA-CA-6717-01 6 88210227 88210227 G T SLC35A1 Nonsense_Mutation p.E66* 0.25 TCGA-CA-6717-01 6 88273918 88273918 G T RARS2 Missense_Mutation p.S48Y 0.16 deleterious(0.03) benign(0.284) TCGA-CA-6717-01 6 88313124 88313124 A C ORC3 Missense_Mutation p.K67T 0.23 deleterious(0.05) benign(0.287) TCGA-CA-6717-01 6 88385253 88385253 T G AKIRIN2 3'UTR 0.12 TCGA-CA-6717-01 6 89324046 89324046 G T RNGTT Silent p.V525V 0.07 TCGA-CA-6717-01 6 89816949 89816949 G A SRSF12 Nonsense_Mutation p.R32* 0.25 TCGA-CA-6717-01 6 89913196 89913196 C A GABRR1 Missense_Mutation p.R44I 0.16 deleterious_low_confidence(0.01) benign(0.034) TCGA-CA-6717-01 6 89967697 89967697 G T GABRR2 Missense_Mutation p.P364T 0.26 deleterious(0.02) possibly_damaging(0.737) TCGA-CA-6717-01 6 89974144 89974144 T A GABRR2 Missense_Mutation p.K358M 0.11 deleterious(0) probably_damaging(0.941) TCGA-CA-6717-01 6 89977750 89977750 G T GABRR2 Missense_Mutation p.S193Y 0.22 deleterious(0) possibly_damaging(0.548) TCGA-CA-6717-01 6 90340611 90340611 G A ANKRD6 Missense_Mutation p.R691Q 0.17 tolerated(0.15) benign(0.048) TCGA-CA-6717-01 6 90353807 90353807 G A MDN1 Nonsense_Mutation p.R5570* 0.27 TCGA-CA-6717-01 6 90365627 90365627 G A MDN1 Missense_Mutation p.R5116C 0.19 unknown(0) TCGA-CA-6717-01 6 90397868 90397868 G A MDN1 Missense_Mutation p.R3762C 0.23 benign(0.007) TCGA-CA-6717-01 6 90402853 90402853 C A MDN1 Missense_Mutation p.R3299M 0.13 possibly_damaging(0.823) TCGA-CA-6717-01 6 90450002 90450002 A C MDN1 Missense_Mutation p.F1515C 0.19 probably_damaging(1) TCGA-CA-6717-01 6 90503842 90503842 A G MDN1 Silent p.D213D 0.10 TCGA-CA-6717-01 6 90572337 90572337 G A CASP8AP2 RNA 0.22 TCGA-CA-6717-01 6 90575818 90575818 G T CASP8AP2 RNA 0.08 TCGA-CA-6717-01 6 90576136 90576136 C T CASP8AP2 RNA 0.11 TCGA-CA-6717-01 6 90604576 90604576 G T GJA10 Missense_Mutation p.R130I 0.22 deleterious(0) probably_damaging(0.966) TCGA-CA-6717-01 6 90605470 90605470 G A GJA10 Missense_Mutation p.R428H 0.13 tolerated(0.11) benign(0.064) TCGA-CA-6717-01 6 90642471 90642471 G A BACH2 Missense_Mutation p.R728W 0.10 deleterious(0.01) possibly_damaging(0.724) TCGA-CA-6717-01 6 90642595 90642595 C A BACH2 Missense_Mutation p.E686D 0.09 tolerated(0.09) possibly_damaging(0.84) TCGA-CA-6717-01 6 93964415 93964415 C T EPHA7 Missense_Mutation p.E828K 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 93982087 93982087 C T EPHA7 Missense_Mutation p.E460K 0.10 tolerated(0.08) benign(0.023) TCGA-CA-6717-01 6 96053788 96053788 T G MANEA Missense_Mutation p.F299C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 6 96652139 96652139 A C FUT9 3'UTR 0.20 TCGA-CA-6717-01 6 96652204 96652204 T C FUT9 3'UTR 0.25 TCGA-CA-6717-01 6 96652335 96652335 G T FUT9 3'UTR 0.16 TCGA-CA-6717-01 6 96652345 96652345 T G FUT9 3'UTR 0.08 TCGA-CA-6717-01 6 96652491 96652491 T G FUT9 3'UTR 0.18 TCGA-CA-6717-01 6 96653991 96653991 G A FUT9 3'UTR 0.23 TCGA-CA-6717-01 6 96654341 96654341 T C FUT9 3'UTR 0.22 TCGA-CA-6717-01 6 96656805 96656805 G T FUT9 3'UTR 0.16 TCGA-CA-6717-01 6 96657445 96657445 A C FUT9 3'UTR 0.22 TCGA-CA-6717-01 6 96659132 96659132 G T FUT9 3'UTR 0.18 TCGA-CA-6717-01 6 96659157 96659157 A C FUT9 3'UTR 0.16 TCGA-CA-6717-01 6 96659298 96659298 T C FUT9 3'UTR 0.12 TCGA-CA-6717-01 6 96659378 96659378 C A FUT9 3'UTR 0.18 TCGA-CA-6717-01 6 96660574 96660574 T A FUT9 3'UTR 0.14 TCGA-CA-6717-01 6 96661374 96661374 T C FUT9 3'UTR 0.10 TCGA-CA-6717-01 6 96662168 96662168 G T FUT9 3'UTR 0.23 TCGA-CA-6717-01 6 96663236 96663236 T G FUT9 3'UTR 0.12 TCGA-CA-6717-01 6 96663288 96663288 G T FUT9 3'UTR 0.10 TCGA-CA-6717-01 6 96984130 96984130 G T UFL1 Missense_Mutation p.E222D 0.05 tolerated(0.06) benign(0.3) TCGA-CA-6717-01 6 97339061 97339061 C A NDUFAF4 Silent p.V149V 0.20 TCGA-CA-6717-01 6 97489380 97489380 C A KLHL32 Missense_Mutation p.L73I 0.16 tolerated(0.09) probably_damaging(0.996) TCGA-CA-6717-01 6 97594588 97594588 G T MMS22L 3'UTR 0.21 TCGA-CA-6717-01 6 97594737 97594737 T C MMS22L Missense_Mutation p.H1226R 0.09 tolerated(0.68) benign(0.154) TCGA-CA-6717-01 6 9897122 9897122 A C OFCC1 Intron 0.11 TCGA-CA-6717-01 6 99283855 99283855 T C POU3F2 Missense_Mutation p.L369P 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 6 99284675 99284675 T G POU3F2 3'UTR 0.16 TCGA-CA-6717-01 6 99286371 99286371 T G POU3F2 3'UTR 0.15 TCGA-CA-6717-01 6 99365397 99365397 C A FBXL4 Missense_Mutation p.K237N 0.07 tolerated(0.16) benign(0.025) TCGA-CA-6717-01 6 99887716 99887716 G A USP45 Missense_Mutation p.R697C 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6717-01 6 99936616 99936616 A C USP45 Missense_Mutation p.L187V 0.10 tolerated(1) benign(0.001) TCGA-CA-6717-01 7 100193329 100193329 G T FBXO24 Missense_Mutation p.Q440H 0.10 tolerated(0.11) possibly_damaging(0.522) TCGA-CA-6717-01 7 100319655 100319655 C A EPO Missense_Mutation p.A77D 0.26 tolerated(0.53) benign(0.008) TCGA-CA-6717-01 7 100348393 100348393 C T ZAN Silent p.L465L 0.17 TCGA-CA-6717-01 7 100385626 100385626 T C ZAN Silent p.P2364P 0.14 TCGA-CA-6717-01 7 100386928 100386928 A G ZAN Missense_Mutation p.D2438G 0.26 unknown(0) TCGA-CA-6717-01 7 100684439 100684439 G A MUC17 Missense_Mutation p.D3248N 0.11 possibly_damaging(0.902) TCGA-CA-6717-01 7 100685362 100685362 T G MUC17 Missense_Mutation p.S3555R 0.11 possibly_damaging(0.485) TCGA-CA-6717-01 7 100773891 100773891 G T SERPINE1 Missense_Mutation p.R154I 0.16 deleterious(0.04) benign(0.345) TCGA-CA-6717-01 7 100867246 100867246 G A ZNHIT1 3'UTR 0.26 TCGA-CA-6717-01 7 102109447 102109447 G A LRWD1 Missense_Mutation p.R389Q 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 7 102453884 102453884 G A FBXL13 Missense_Mutation p.P705S 0.09 tolerated(0.28) benign(0.004) TCGA-CA-6717-01 7 102523868 102523868 A C FBXL13 Missense_Mutation p.N424K 0.20 tolerated(0.27) benign(0.013) TCGA-CA-6717-01 7 102575035 102575035 A C LRRC17 Missense_Mutation p.Q225H 0.14 tolerated(0.13) benign(0.312) TCGA-CA-6717-01 7 102760469 102760469 G A NAPEPLD Missense_Mutation p.R166C 0.15 deleterious(0) possibly_damaging(0.55) TCGA-CA-6717-01 7 102874251 102874251 G A DPY19L2P2 RNA 0.09 TCGA-CA-6717-01 7 102953489 102953489 A G DNAJC2 Silent p.L566L 0.10 TCGA-CA-6717-01 7 102978098 102978098 T G DNAJC2 Intron 0.11 TCGA-CA-6717-01 7 102995377 102995377 G T PSMC2 Missense_Mutation p.K57N 0.24 tolerated(0.18) possibly_damaging(0.588) TCGA-CA-6717-01 7 103019761 103019761 T G SLC26A5 Missense_Mutation p.K536Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 103032179 103032179 G A SLC26A5 Missense_Mutation p.L375F 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-CA-6717-01 7 103175890 103175890 G A RELN Missense_Mutation p.H2408Y 0.17 tolerated(0.1) benign(0.222) TCGA-CA-6717-01 7 103179559 103179559 G A RELN Silent p.F2382F 0.36 TCGA-CA-6717-01 7 103183275 103183275 G A RELN Nonsense_Mutation p.R2192* 0.19 TCGA-CA-6717-01 7 103205756 103205756 G A RELN Missense_Mutation p.R1727W 0.16 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 7 103237067 103237067 A C RELN Silent p.S1125S 0.12 TCGA-CA-6717-01 7 103243829 103243829 T G RELN Missense_Mutation p.E1085D 0.19 tolerated(0.15) probably_damaging(0.989) TCGA-CA-6717-01 7 103244862 103244862 C T RELN Missense_Mutation p.S1026N 0.12 tolerated(1) benign(0.001) TCGA-CA-6717-01 7 103275901 103275901 A C RELN Missense_Mutation p.H812Q 0.15 tolerated(0.21) possibly_damaging(0.649) TCGA-CA-6717-01 7 103805688 103805688 C T ORC5 Missense_Mutation p.E345K 0.09 tolerated(0.18) benign(0.111) TCGA-CA-6717-01 7 104746993 104746993 G A KMT2E Missense_Mutation p.R874Q 0.11 deleterious_low_confidence(0) benign(0.238) TCGA-CA-6717-01 7 104748366 104748366 G T KMT2E Missense_Mutation p.K1154N 0.19 deleterious_low_confidence(0) benign(0.403) TCGA-CA-6717-01 7 104782719 104782719 G T SRPK2 Missense_Mutation p.L427I 0.14 tolerated(0.48) benign(0.124) TCGA-CA-6717-01 7 105098242 105098242 G A PUS7 Missense_Mutation p.R661C 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6717-01 7 105148681 105148681 G A PUS7 Silent p.C93C 0.11 TCGA-CA-6717-01 7 105283329 105283329 T C ATXN7L1 Missense_Mutation p.Q273R 0.16 deleterious(0.01) benign(0.438) TCGA-CA-6717-01 7 105615296 105615296 A G CDHR3 Missense_Mutation p.E18G 0.20 tolerated(0.19) benign(0.004) TCGA-CA-6717-01 7 105653471 105653471 G T CDHR3 Missense_Mutation p.K406N 0.08 tolerated(0.22) benign(0.11) TCGA-CA-6717-01 7 105664865 105664865 C A CDHR3 Nonsense_Mutation p.Y705* 0.18 TCGA-CA-6717-01 7 105917475 105917475 A C NAMPT Missense_Mutation p.L70V 0.11 deleterious(0.01) benign(0.155) TCGA-CA-6717-01 7 105917478 105917478 A G NAMPT Missense_Mutation p.Y69H 0.23 deleterious(0.02) probably_damaging(0.983) TCGA-CA-6717-01 7 106301133 106301133 G T CCDC71L Missense_Mutation p.F70L 0.11 tolerated(0.36) probably_damaging(0.953) TCGA-CA-6717-01 7 106509669 106509669 T A PIK3CG Missense_Mutation p.L555M 0.25 tolerated(0.08) possibly_damaging(0.685) TCGA-CA-6717-01 7 106509948 106509948 C T PIK3CG Silent p.L648L 0.14 TCGA-CA-6717-01 7 106520092 106520092 A G PIK3CG Silent p.Q840Q 0.11 TCGA-CA-6717-01 7 106522648 106522648 A C PIK3CG Missense_Mutation p.K875N 0.17 tolerated(0.66) benign(0.002) TCGA-CA-6717-01 7 106545740 106545740 G A PIK3CG Missense_Mutation p.E1073K 0.18 tolerated(0.17) benign(0.139) TCGA-CA-6717-01 7 106924102 106924102 G A COG5 Silent p.F494F 0.22 TCGA-CA-6717-01 7 107114763 107114763 A G GPR22 Silent p.V86V 0.11 TCGA-CA-6717-01 7 107114777 107114777 T G GPR22 Missense_Mutation p.I91S 0.11 deleterious(0) possibly_damaging(0.486) TCGA-CA-6717-01 7 107115287 107115287 C A GPR22 Missense_Mutation p.S261Y 0.20 deleterious(0.01) possibly_damaging(0.876) TCGA-CA-6717-01 7 107115520 107115520 T G GPR22 Missense_Mutation p.L339V 0.10 tolerated(1) benign(0.002) TCGA-CA-6717-01 7 107214211 107214211 C T DUS4L Missense_Mutation p.R101C 0.20 tolerated(0.13) benign(0) TCGA-CA-6717-01 7 107224336 107224336 G T BCAP29 Missense_Mutation p.K34N 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6717-01 7 107259166 107259166 T G BCAP29 3'UTR 0.29 TCGA-CA-6717-01 7 107262401 107262401 T G BCAP29 3'UTR 0.33 TCGA-CA-6717-01 7 107312675 107312675 T G SLC26A4 Missense_Mutation p.S133A 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 7 107323743 107323743 T G SLC26A4 Missense_Mutation p.L288V 0.18 tolerated(0.27) benign(0.011) TCGA-CA-6717-01 7 107415298 107415298 C T SLC26A3 Missense_Mutation p.R566Q 0.18 tolerated(0.06) benign(0.382) TCGA-CA-6717-01 7 107423657 107423657 C A SLC26A3 Missense_Mutation p.G371V 0.16 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 7 107555995 107555995 A C DLD Missense_Mutation p.E243D 0.15 deleterious(0.02) possibly_damaging(0.719) TCGA-CA-6717-01 7 107564529 107564529 A G LAMB1 Missense_Mutation p.L1743S 0.19 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 7 107575865 107575865 C T LAMB1 Missense_Mutation p.E1395K 0.17 deleterious(0.03) benign(0.094) TCGA-CA-6717-01 7 107698372 107698372 A C LAMB4 Missense_Mutation p.L1095R 0.13 deleterious(0.03) possibly_damaging(0.844) TCGA-CA-6717-01 7 107746279 107746279 A C LAMB4 Missense_Mutation p.F285V 0.13 deleterious(0) probably_damaging(0.942) TCGA-CA-6717-01 7 107746348 107746348 G A LAMB4 Missense_Mutation p.R262W 0.16 deleterious(0) possibly_damaging(0.683) TCGA-CA-6717-01 7 107763603 107763603 A C LAMB4 Missense_Mutation p.F3V 0.09 deleterious(0.01) benign(0.018) TCGA-CA-6717-01 7 107807482 107807482 G T NRCAM Missense_Mutation p.S1117Y 0.12 deleterious(0) possibly_damaging(0.8) TCGA-CA-6717-01 7 107850034 107850034 A C NRCAM Missense_Mutation p.I302M 0.08 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 7 108137134 108137134 G A PNPLA8 Nonsense_Mutation p.R507* 0.09 TCGA-CA-6717-01 7 108155570 108155570 C A PNPLA8 Missense_Mutation p.M122I 0.27 tolerated_low_confidence(0.13) benign(0.101) TCGA-CA-6717-01 7 108155862 108155862 C A PNPLA8 Missense_Mutation p.R25I 0.12 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-CA-6717-01 7 108212225 108212225 G T DNAJB9 Nonsense_Mutation p.E19* 0.10 TCGA-CA-6717-01 7 108524548 108524548 G T C7orf66 Silent p.L14L 0.30 TCGA-CA-6717-01 7 110765264 110765264 T G LRRN3 3'UTR 0.14 TCGA-CA-6717-01 7 111386458 111386458 C A DOCK4 Nonsense_Mutation p.E1528* 0.11 TCGA-CA-6717-01 7 111512115 111512115 T G DOCK4 Missense_Mutation p.K653T 0.10 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 7 111936302 111936302 T A ZNF277 Missense_Mutation p.F134Y 0.09 tolerated(0.31) benign(0.003) TCGA-CA-6717-01 7 112407230 112407230 A C TMEM168 3'UTR 0.32 TCGA-CA-6717-01 7 112424649 112424649 C T TMEM168 Missense_Mutation p.A78T 0.15 deleterious(0.04) possibly_damaging(0.794) TCGA-CA-6717-01 7 112555479 112555479 G A C7orf60 Nonsense_Mutation p.R62* 0.20 TCGA-CA-6717-01 7 113518272 113518272 C A PPP1R3A Nonsense_Mutation p.E959* 0.12 TCGA-CA-6717-01 7 113519046 113519046 C A PPP1R3A Nonsense_Mutation p.E701* 0.22 TCGA-CA-6717-01 7 113519157 113519157 T C PPP1R3A Missense_Mutation p.K664E 0.20 tolerated(0.43) benign(0.006) TCGA-CA-6717-01 7 113519722 113519722 T G PPP1R3A Missense_Mutation p.K475N 0.17 deleterious(0.05) possibly_damaging(0.894) TCGA-CA-6717-01 7 113520057 113520057 C A PPP1R3A Nonsense_Mutation p.E364* 0.11 TCGA-CA-6717-01 7 113522337 113522337 A G PPP1R3A Missense_Mutation p.F274S 0.12 tolerated(0.15) benign(0.017) TCGA-CA-6717-01 7 114284863 114284863 T G FOXP2 Intron 0.28 TCGA-CA-6717-01 7 11485938 11485938 C A THSD7A Missense_Mutation p.K938N 0.15 deleterious(0) possibly_damaging(0.548) TCGA-CA-6717-01 7 115580749 115580749 C A TFEC Missense_Mutation p.E300D 0.14 tolerated(0.1) probably_damaging(0.999) TCGA-CA-6717-01 7 115590970 115590970 C T TFEC Missense_Mutation p.R158Q 0.16 deleterious(0.02) probably_damaging(0.918) TCGA-CA-6717-01 7 115594697 115594697 C A TFEC Splice_Site p.X128_splice 0.18 TCGA-CA-6717-01 7 116146224 116146224 T C CAV2 3'UTR 0.13 TCGA-CA-6717-01 7 11675887 11675887 C T THSD7A Missense_Mutation p.E298K 0.22 tolerated(0.05) benign(0.027) TCGA-CA-6717-01 7 116869837 116869837 C T ST7 Missense_Mutation p.P476S 0.45 deleterious_low_confidence(0.04) probably_damaging(0.932) TCGA-CA-6717-01 7 117060321 117060321 T G ASZ1 Missense_Mutation p.Q112H 0.33 tolerated(0.1) benign(0.001) TCGA-CA-6717-01 7 117431778 117431778 G T CTTNBP2 Missense_Mutation p.T491N 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 119914867 119914867 C T KCND2 Missense_Mutation p.R61C 0.31 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 7 120387892 120387892 G A KCND2 Missense_Mutation p.V625I 0.14 tolerated_low_confidence(0.12) benign(0.047) TCGA-CA-6717-01 7 120655725 120655725 G T CPED1 Nonsense_Mutation p.E86* 0.27 TCGA-CA-6717-01 7 120935534 120935534 A C CPED1 Missense_Mutation p.K970T 0.11 tolerated(0.34) benign(0.034) TCGA-CA-6717-01 7 121650659 121650659 C A PTPRZ1 Missense_Mutation p.S520Y 0.12 tolerated(0.07) possibly_damaging(0.494) TCGA-CA-6717-01 7 121650951 121650951 A G PTPRZ1 Missense_Mutation p.I617M 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.534) TCGA-CA-6717-01 7 121676656 121676656 G T PTPRZ1 Missense_Mutation p.D1763Y 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 121718953 121718953 A G AASS Silent p.D816D 0.20 TCGA-CA-6717-01 7 121942310 121942310 T C FEZF1 Missense_Mutation p.H390R 0.09 deleterious(0) probably_damaging(0.977) TCGA-CA-6717-01 7 121942942 121942942 C A FEZF1 Missense_Mutation p.R327I 0.19 deleterious(0) possibly_damaging(0.908) TCGA-CA-6717-01 7 12254479 12254479 G T TMEM106B Nonsense_Mutation p.E15* 0.15 TCGA-CA-6717-01 7 122635291 122635291 G T TAS2R16 Missense_Mutation p.S133Y 0.23 deleterious(0.04) benign(0.289) TCGA-CA-6717-01 7 122769453 122769453 T G SLC13A1 Missense_Mutation p.K339Q 0.19 tolerated(0.07) possibly_damaging(0.644) TCGA-CA-6717-01 7 122839966 122839966 C T SLC13A1 Missense_Mutation p.R12Q 0.23 tolerated(0.18) benign(0.257) TCGA-CA-6717-01 7 123097498 123097498 C T IQUB Nonsense_Mutation p.W710* 0.11 TCGA-CA-6717-01 7 123104957 123104957 C A IQUB Missense_Mutation p.R563I 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 123109319 123109319 G T IQUB Silent p.I510I 0.20 TCGA-CA-6717-01 7 123152119 123152119 C T IQUB Silent p.P92P 0.11 TCGA-CA-6717-01 7 123302153 123302153 G T LMOD2 Missense_Mutation p.E171D 0.20 tolerated(0.41) benign(0.01) TCGA-CA-6717-01 7 123324580 123324580 T C WASL Missense_Mutation p.E504G 0.15 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 7 123509051 123509051 G T HYAL4 Missense_Mutation p.V242F 0.12 tolerated(0.41) probably_damaging(0.973) TCGA-CA-6717-01 7 123595075 123595075 G A SPAM1 Missense_Mutation p.E327K 0.09 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 7 123673423 123673423 T C TMEM229A 5'UTR 0.17 TCGA-CA-6717-01 7 12391305 12391305 T G VWDE Missense_Mutation p.Q1260H 0.25 tolerated(0.41) benign(0.004) TCGA-CA-6717-01 7 12409612 12409612 C A VWDE Nonsense_Mutation p.E774* 0.09 TCGA-CA-6717-01 7 12417430 12417430 G T VWDE Silent p.I332I 0.22 TCGA-CA-6717-01 7 12433318 12433318 C A VWDE Missense_Mutation p.A49S 0.19 tolerated(0.1) benign(0.11) TCGA-CA-6717-01 7 124386647 124386647 C T GPR37 Missense_Mutation p.E592K 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-CA-6717-01 7 12443490 12443490 C A VWDE 5'UTR 0.17 TCGA-CA-6717-01 7 126173066 126173066 G T GRM8 Silent p.T790T 0.09 TCGA-CA-6717-01 7 126173484 126173484 C T GRM8 Missense_Mutation p.R651Q 0.17 tolerated(0.29) probably_damaging(0.999) TCGA-CA-6717-01 7 126883035 126883035 C A GRM8 Missense_Mutation p.R75I 0.10 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 7 12689100 12689100 G T SCIN Missense_Mutation p.E630D 0.13 deleterious(0) benign(0.424) TCGA-CA-6717-01 7 127222834 127222834 T A GCC1 Missense_Mutation p.Q521L 0.16 deleterious(0.01) benign(0.031) TCGA-CA-6717-01 7 127225214 127225214 A G GCC1 Missense_Mutation p.F8S 0.16 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 7 127235396 127235396 A G FSCN3 Silent p.T60T 0.11 TCGA-CA-6717-01 7 12728247 12728247 A C ARL4A Missense_Mutation p.E123A 0.10 deleterious(0.05) benign(0.04) TCGA-CA-6717-01 7 12729048 12729048 G T ARL4A 3'UTR 0.14 TCGA-CA-6717-01 7 127637840 127637840 T G SND1 Intron 0.07 TCGA-CA-6717-01 7 127714711 127714711 C T SND1 Missense_Mutation p.A646V 0.27 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 7 128040586 128040586 T C IMPDH1 Missense_Mutation p.E196G 0.11 deleterious(0) possibly_damaging(0.823) TCGA-CA-6717-01 7 128119443 128119443 C T METTL2B Missense_Mutation p.S145L 0.08 tolerated(0.27) benign(0.002) TCGA-CA-6717-01 7 128415041 128415041 G A OPN1SW Missense_Mutation p.R174W 0.22 deleterious(0.03) possibly_damaging(0.479) TCGA-CA-6717-01 7 128445486 128445486 G A CCDC136 Missense_Mutation p.E286K 0.15 tolerated(0.12) benign(0.205) TCGA-CA-6717-01 7 128457901 128457901 G T CCDC136 Missense_Mutation p.E1151D 0.07 deleterious(0) probably_damaging(0.921) TCGA-CA-6717-01 7 128488618 128488619 - A FLNC Frame_Shift_Ins p.F1529Ifs*10 0.12 TCGA-CA-6717-01 7 128494947 128494947 C A FLNC Silent p.S2372S 0.15 TCGA-CA-6717-01 7 128532655 128532655 T C KCP RNA 0.18 TCGA-CA-6717-01 7 128532662 128532662 C T KCP Splice_Site 0.21 TCGA-CA-6717-01 7 128588283 128588283 G T IRF5 Missense_Mutation p.K400N 0.14 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 7 128588335 128588335 G T IRF5 Nonsense_Mutation p.E418* 0.11 TCGA-CA-6717-01 7 128607361 128607361 A C TNPO3 Missense_Mutation p.L895R 0.10 deleterious(0) probably_damaging(0.983) TCGA-CA-6717-01 7 128655092 128655092 G A TNPO3 Missense_Mutation p.R165W 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 129028955 129028955 G T AHCYL2 Missense_Mutation p.K178N 0.18 tolerated(0.1) benign(0.003) TCGA-CA-6717-01 7 129029019 129029019 G T AHCYL2 Nonsense_Mutation p.E200* 0.09 TCGA-CA-6717-01 7 129813679 129813679 G A TMEM209 Missense_Mutation p.T482I 0.13 deleterious(0) probably_damaging(0.909) TCGA-CA-6717-01 7 129847742 129847742 G T SSMEM1 5'UTR 0.11 TCGA-CA-6717-01 7 129945727 129945727 C A CPA4 Silent p.I186I 0.14 TCGA-CA-6717-01 7 130021987 130021987 G A CPA1 Silent p.P140P 0.21 TCGA-CA-6717-01 7 130297053 130297053 T G COPG2 Missense_Mutation p.E183D 0.11 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 7 130357582 130357582 T G TSGA13 Missense_Mutation p.Q174H 0.08 deleterious(0.01) benign(0.018) TCGA-CA-6717-01 7 130370109 130370109 C A TSGA13 5'UTR 0.22 TCGA-CA-6717-01 7 130418231 130418231 C T KLF14 Silent p.S210S 0.12 TCGA-CA-6717-01 7 131113892 131113892 C G MKLN1 Missense_Mutation p.D316E 0.16 deleterious(0.05) possibly_damaging(0.733) TCGA-CA-6717-01 7 131815309 131815309 C T PLXNA4 Missense_Mutation p.D1872N 0.12 deleterious(0.01) possibly_damaging(0.678) TCGA-CA-6717-01 7 131859671 131859671 C T PLXNA4 Missense_Mutation p.E1295K 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 7 131878902 131878902 C T PLXNA4 Silent p.Q925Q 0.22 TCGA-CA-6717-01 7 133168803 133168803 G A EXOC4 Intron 0.18 TCGA-CA-6717-01 7 133833014 133833014 A C LRGUK Missense_Mutation p.Q204H 0.14 deleterious(0.04) benign(0.01) TCGA-CA-6717-01 7 133906585 133906585 C T LRGUK Missense_Mutation p.S633L 0.10 tolerated(0.21) benign(0.004) TCGA-CA-6717-01 7 134133183 134133183 G A AKR1B1 Silent p.I205I 0.29 TCGA-CA-6717-01 7 134133834 134133834 G A AKR1B1 Missense_Mutation p.A156V 0.15 deleterious(0.02) possibly_damaging(0.717) TCGA-CA-6717-01 7 134261762 134261762 G T AKR1B15 Missense_Mutation p.K291N 0.17 deleterious(0.01) possibly_damaging(0.672) TCGA-CA-6717-01 7 134642968 134642968 T G CALD1 Missense_Mutation p.V663G 0.19 deleterious(0) possibly_damaging(0.853) TCGA-CA-6717-01 7 134678407 134678407 C T AGBL3 Silent p.I96I 0.25 TCGA-CA-6717-01 7 134719110 134719110 G A AGBL3 Nonsense_Mutation p.W256* 0.14 TCGA-CA-6717-01 7 134853507 134853507 C T C7orf49 Intron 0.09 TCGA-CA-6717-01 7 135282926 135282926 A G NUP205 Missense_Mutation p.T749A 0.12 tolerated(0.07) possibly_damaging(0.629) TCGA-CA-6717-01 7 135289111 135289111 A C NUP205 Missense_Mutation p.N909T 0.13 tolerated(0.67) benign(0.064) TCGA-CA-6717-01 7 135291515 135291515 G T NUP205 Missense_Mutation p.K974N 0.16 tolerated(0.22) benign(0.014) TCGA-CA-6717-01 7 135304412 135304412 A C NUP205 Missense_Mutation p.K1402T 0.31 tolerated(0.22) benign(0.232) TCGA-CA-6717-01 7 135368907 135368907 C T SLC13A4 Missense_Mutation p.V570I 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6717-01 7 135612700 135612700 G T AC015987.2 3'UTR 0.10 TCGA-CA-6717-01 7 135612720 135612720 A C AC015987.2 3'UTR 0.15 TCGA-CA-6717-01 7 135635388 135635388 A C MTPN Missense_Mutation p.Y77D 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-CA-6717-01 7 136699794 136699794 T G CHRM2 Missense_Mutation p.F61C 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 136701381 136701381 C A CHRM2 3'UTR 0.16 TCGA-CA-6717-01 7 136701500 136701500 G T CHRM2 3'UTR 0.11 TCGA-CA-6717-01 7 137255969 137255969 A G DGKI Silent p.R633R 0.09 TCGA-CA-6717-01 7 137374656 137374656 G A DGKI Missense_Mutation p.A165V 0.15 deleterious(0.03) benign(0.009) TCGA-CA-6717-01 7 137761356 137761356 C T AKR1D1 Missense_Mutation p.S31L 0.15 tolerated(0.2) benign(0.001) TCGA-CA-6717-01 7 137792315 137792315 G T AKR1D1 Nonsense_Mutation p.E282* 0.09 TCGA-CA-6717-01 7 138239456 138239456 C T TRIM24 Silent p.I425I 0.19 TCGA-CA-6717-01 7 138262238 138262238 C T TRIM24 Nonsense_Mutation p.R721* 0.39 TCGA-CA-6717-01 7 138400610 138400610 A C ATP6V0A4 Missense_Mutation p.V719G 0.13 deleterious(0) possibly_damaging(0.678) TCGA-CA-6717-01 7 138413529 138413529 T C ATP6V0A4 Missense_Mutation p.R663G 0.19 tolerated(0.23) probably_damaging(0.995) TCGA-CA-6717-01 7 138444564 138444564 C T ATP6V0A4 Missense_Mutation p.R191Q 0.24 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 7 138522708 138522708 G A KIAA1549 Silent p.R1932R 0.17 TCGA-CA-6717-01 7 138604114 138604114 C A KIAA1549 Silent p.G86G 0.19 TCGA-CA-6717-01 7 138732376 138732376 A G ZC3HAV1 Silent p.I891I 0.12 TCGA-CA-6717-01 7 138749718 138749718 C T ZC3HAV1 Missense_Mutation p.D634N 0.11 tolerated(0.17) benign(0.212) TCGA-CA-6717-01 7 138763393 138763393 A G ZC3HAV1 Missense_Mutation p.L493S 0.10 tolerated(0.25) benign(0.007) TCGA-CA-6717-01 7 138863305 138863305 A G TTC26 Silent p.Q401Q 0.21 TCGA-CA-6717-01 7 139083402 139083402 G A LUC7L2 Missense_Mutation p.E138K 0.11 deleterious(0.02) possibly_damaging(0.656) TCGA-CA-6717-01 7 139083404 139083404 A C LUC7L2 Missense_Mutation p.E138D 0.17 deleterious(0.04) possibly_damaging(0.627) TCGA-CA-6717-01 7 13971306 13971306 C T ETV1 Missense_Mutation p.R208H 0.12 tolerated(0.06) probably_damaging(0.951) TCGA-CA-6717-01 7 139727144 139727144 C T PARP12 Silent p.T520T 0.19 TCGA-CA-6717-01 7 139790874 139790874 T C KDM7A 3'UTR 0.12 TCGA-CA-6717-01 7 140221673 140221673 G A DENND2A Missense_Mutation p.R965C 0.14 deleterious(0.02) benign(0.189) TCGA-CA-6717-01 7 140266970 140266970 G A DENND2A Silent p.F565F 0.17 TCGA-CA-6717-01 7 140387003 140387003 A C ADCK2 Missense_Mutation p.N507H 0.10 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 7 140449170 140449170 A G BRAF Missense_Mutation p.S637P 0.08 deleterious(0.02) probably_damaging(1) TCGA-CA-6717-01 7 141423843 141423843 A C WEE2 Missense_Mutation p.K377T 0.22 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 7 141424849 141424849 A C WEE2 Silent p.A415A 0.23 TCGA-CA-6717-01 7 141464199 141464199 A G TAS2R3 Missense_Mutation p.I81V 0.14 tolerated(0.73) benign(0.003) TCGA-CA-6717-01 7 141490479 141490479 G T TAS2R5 Missense_Mutation p.K106N 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 141536963 141536963 G T PRSS37 Missense_Mutation p.H172Q 0.13 tolerated(0.06) possibly_damaging(0.836) TCGA-CA-6717-01 7 141619304 141619304 C A OR9A4 Missense_Mutation p.S210Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 7 141619447 141619447 C A OR9A4 Missense_Mutation p.L258I 0.16 tolerated(0.31) probably_damaging(0.999) TCGA-CA-6717-01 7 141673347 141673347 T C TAS2R38 Missense_Mutation p.Q48R 0.19 tolerated(0.67) benign(0.041) TCGA-CA-6717-01 7 141673444 141673444 T C TAS2R38 Missense_Mutation p.S16G 0.13 tolerated(0.34) benign(0.003) TCGA-CA-6717-01 7 141705355 141705355 T A MGAM Missense_Mutation p.F9I 0.11 deleterious(0) benign(0.001) TCGA-CA-6717-01 7 141740554 141740554 C A MGAM Silent p.V802V 0.28 TCGA-CA-6717-01 7 141752101 141752101 T G MGAM Missense_Mutation p.I938S 0.17 tolerated(0.57) benign(0.053) TCGA-CA-6717-01 7 141752137 141752137 A G MGAM Missense_Mutation p.Y950C 0.18 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 7 141759368 141759368 A C MGAM Missense_Mutation p.K1306Q 0.11 tolerated(0.1) benign(0.105) TCGA-CA-6717-01 7 141765529 141765529 C A MGAM Intron 0.09 TCGA-CA-6717-01 7 142460364 142460364 T C PRSS1 Silent p.I179I 0.07 TCGA-CA-6717-01 7 142655044 142655044 A G KEL Missense_Mutation p.I181T 0.16 deleterious(0) possibly_damaging(0.899) TCGA-CA-6717-01 7 142749471 142749471 C A OR6V1 Missense_Mutation p.L12I 0.16 deleterious(0) possibly_damaging(0.844) TCGA-CA-6717-01 7 142881502 142881502 C A TAS2R39 Missense_Mutation p.L331I 0.21 tolerated(0.05) benign(0.141) TCGA-CA-6717-01 7 142983678 142983678 G A TMEM139 Missense_Mutation p.R136K 0.11 tolerated(0.45) possibly_damaging(0.648) TCGA-CA-6717-01 7 142997018 142997018 A C CASP2 Missense_Mutation p.E250D 0.12 tolerated(0.22) benign(0.001) TCGA-CA-6717-01 7 143048806 143048806 G A CLCN1 Silent p.E905E 0.14 TCGA-CA-6717-01 7 143080129 143080129 C A ZYX Missense_Mutation p.S246Y 0.30 tolerated(0.39) possibly_damaging(0.635) TCGA-CA-6717-01 7 143175732 143175732 A C TAS2R41 Missense_Mutation p.K256T 0.22 tolerated(0.64) benign(0.029) TCGA-CA-6717-01 7 143632651 143632651 G T OR2F2 Missense_Mutation p.G109V 0.11 tolerated(0.05) benign(0.41) TCGA-CA-6717-01 7 143747522 143747522 G T OR2A5 Nonsense_Mutation p.E10* 0.09 TCGA-CA-6717-01 7 143748033 143748033 A T OR2A5 Missense_Mutation p.E180V 0.10 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 7 143771851 143771851 T G OR2A25 Missense_Mutation p.I180S 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-CA-6717-01 7 143807436 143807436 C A OR2A2 Missense_Mutation p.A254D 0.09 deleterious(0.01) probably_damaging(0.966) TCGA-CA-6717-01 7 146536969 146536969 A G CNTNAP2 Silent p.K125K 0.10 TCGA-CA-6717-01 7 146829536 146829536 A G CNTNAP2 Missense_Mutation p.E428G 0.15 tolerated(0.27) benign(0.002) TCGA-CA-6717-01 7 147075117 147075117 C A CNTNAP2 Intron 0.18 TCGA-CA-6717-01 7 14722189 14722189 A G DGKB Missense_Mutation p.C342R 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 147259321 147259321 G A CNTNAP2 Silent p.G623G 0.20 TCGA-CA-6717-01 7 148494941 148494941 C T CUL1 Missense_Mutation p.S646L 0.13 tolerated(0.07) benign(0.025) TCGA-CA-6717-01 7 148523708 148523708 C T EZH2 Missense_Mutation p.E249K 0.17 tolerated(0.13) probably_damaging(0.998) TCGA-CA-6717-01 7 148543689 148543689 C A EZH2 Missense_Mutation p.S40I 0.11 tolerated(0.1) possibly_damaging(0.517) TCGA-CA-6717-01 7 148851271 148851271 G A ZNF398 Missense_Mutation p.E87K 0.24 deleterious(0) benign(0.154) TCGA-CA-6717-01 7 148947257 148947257 G A ZNF212 Missense_Mutation p.R11K 0.23 tolerated(0.06) benign(0.197) TCGA-CA-6717-01 7 149462476 149462476 G A ZNF467 Missense_Mutation p.T372M 0.17 tolerated(0.16) benign(0.168) TCGA-CA-6717-01 7 149492298 149492298 G A SSPO Splice_Site 0.12 TCGA-CA-6717-01 7 149512402 149512402 C T SSPO RNA 0.13 TCGA-CA-6717-01 7 149547397 149547397 C T ZNF862 Missense_Mutation p.R363W 0.14 tolerated_low_confidence(0.07) benign(0.035) TCGA-CA-6717-01 7 150028862 150028862 T C ZBED6CL 3'UTR 0.11 TCGA-CA-6717-01 7 150163868 150163868 A G GIMAP8 Missense_Mutation p.N28D 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.10 tolerated(0.95) benign(0) TCGA-CA-6717-01 7 150270131 150270131 C A GIMAP4 Missense_Mutation p.L325M 0.12 tolerated(0.06) benign(0.066) TCGA-CA-6717-01 7 150389618 150389618 T G GIMAP2 Missense_Mutation p.F82V 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 150502024 150502024 A T TMEM176A 3'UTR 0.12 TCGA-CA-6717-01 7 150700685 150700685 G A NOS3 Intron 0.14 TCGA-CA-6717-01 7 150707365 150707365 C T NOS3 Missense_Mutation p.A892V 0.20 tolerated(1) benign(0.008) TCGA-CA-6717-01 7 150845722 150845722 G A GBX1 Missense_Mutation p.A349V 0.25 deleterious(0) possibly_damaging(0.474) TCGA-CA-6717-01 7 151097317 151097317 G A WDR86 Silent p.S58S 0.08 TCGA-CA-6717-01 7 151699925 151699925 G T GALNTL5 Missense_Mutation p.R262I 0.32 tolerated(0.12) benign(0.007) TCGA-CA-6717-01 7 151711797 151711797 A C GALNTL5 Missense_Mutation p.Q365H 0.13 tolerated(0.21) benign(0.001) TCGA-CA-6717-01 7 151810423 151810423 C A GALNT11 Silent p.G391G 0.12 TCGA-CA-6717-01 7 151859850 151859850 C A KMT2C Missense_Mutation p.K3604N 0.09 possibly_damaging(0.764) TCGA-CA-6717-01 7 151873309 151873309 G A KMT2C Missense_Mutation p.R3077C 0.08 probably_damaging(0.999) TCGA-CA-6717-01 7 151873626 151873626 G T KMT2C Missense_Mutation p.S2971Y 0.19 probably_damaging(0.91) TCGA-CA-6717-01 7 151880112 151880112 C A KMT2C Missense_Mutation p.D1738Y 0.10 probably_damaging(0.999) TCGA-CA-6717-01 7 151921523 151921523 T C KMT2C Missense_Mutation p.K1052R 0.09 probably_damaging(0.999) TCGA-CA-6717-01 7 151945337 151945337 C A KMT2C Nonsense_Mutation p.E728* 0.12 TCGA-CA-6717-01 7 151947030 151947030 C T KMT2C Missense_Mutation p.V582I 0.14 benign(0.002) TCGA-CA-6717-01 7 152009030 152009030 C A KMT2C Nonsense_Mutation p.E198* 0.24 TCGA-CA-6717-01 7 152497716 152497716 C T ACTR3B Silent p.I67I 0.10 TCGA-CA-6717-01 7 152511659 152511659 G T ACTR3B Nonsense_Mutation p.E121* 0.10 TCGA-CA-6717-01 7 153584774 153584774 G T DPP6 Missense_Mutation p.K2N 0.15 deleterious_low_confidence(0.04) benign(0.403) TCGA-CA-6717-01 7 154172119 154172119 A C DPP6 Missense_Mutation p.S152R 0.48 deleterious(0) possibly_damaging(0.907) TCGA-CA-6717-01 7 15430525 15430525 T G AGMO Missense_Mutation p.N228H 0.17 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 7 154519507 154519507 T G DPP6 Missense_Mutation p.C265G 0.10 tolerated(0.08) probably_damaging(0.913) TCGA-CA-6717-01 7 154720428 154720428 G C PAXIP1-AS2 Missense_Mutation p.A24P 0.09 possibly_damaging(0.826) TCGA-CA-6717-01 7 154754159 154754159 C A PAXIP1 Nonsense_Mutation p.E667* 0.11 TCGA-CA-6717-01 7 155537746 155537746 T G RBM33 Nonsense_Mutation p.L810* 0.15 TCGA-CA-6717-01 7 155593268 155593268 C T SHH 3'UTR 0.17 TCGA-CA-6717-01 7 156476847 156476847 T C LMBR1 Silent p.K466K 0.22 TCGA-CA-6717-01 7 15651987 15651987 G A MEOX2 3'UTR 0.24 TCGA-CA-6717-01 7 15651996 15651996 T C MEOX2 3'UTR 0.24 TCGA-CA-6717-01 7 156629515 156629515 C A LMBR1 Missense_Mutation p.R44I 0.07 deleterious(0) possibly_damaging(0.87) TCGA-CA-6717-01 7 156754928 156754928 G T NOM1 Missense_Mutation p.E572D 0.09 deleterious(0) possibly_damaging(0.464) TCGA-CA-6717-01 7 156974812 156974812 T G UBE3C Missense_Mutation p.F261V 0.09 tolerated(0.2) benign(0.004) TCGA-CA-6717-01 7 157000138 157000138 T C UBE3C Missense_Mutation p.S489P 0.10 tolerated(0.06) benign(0.027) TCGA-CA-6717-01 7 157009609 157009609 A C UBE3C Missense_Mutation p.N620H 0.11 tolerated(0.12) benign(0.01) TCGA-CA-6717-01 7 157341689 157341689 G A PTPRN2 Missense_Mutation p.A976V 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-CA-6717-01 7 158455005 158455005 C A NCAPG2 Nonsense_Mutation p.E624* 0.19 TCGA-CA-6717-01 7 158473475 158473475 G A NCAPG2 Missense_Mutation p.R320W 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 158485611 158485611 A G NCAPG2 Missense_Mutation p.V102A 0.16 deleterious(0.02) benign(0.068) TCGA-CA-6717-01 7 158540968 158540968 G A ESYT2 Nonsense_Mutation p.R548* 0.17 TCGA-CA-6717-01 7 158679721 158679721 G T WDR60 Missense_Mutation p.E315D 0.18 tolerated(0.06) benign(0.176) TCGA-CA-6717-01 7 158695181 158695181 G T WDR60 Nonsense_Mutation p.E418* 0.09 TCGA-CA-6717-01 7 158727181 158727181 A C WDR60 Missense_Mutation p.I907L 0.12 tolerated(1) benign(0.141) TCGA-CA-6717-01 7 158896487 158896487 G A VIPR2 Silent p.V106V 0.12 TCGA-CA-6717-01 7 16255735 16255735 C A ISPD Nonsense_Mutation p.E403* 0.17 TCGA-CA-6717-01 7 16255806 16255806 A G ISPD Missense_Mutation p.F379S 0.09 tolerated(0.41) benign(0.003) TCGA-CA-6717-01 7 16505334 16505334 C A SOSTDC1 5'UTR 0.21 TCGA-CA-6717-01 7 17379255 17379255 A G AHR Silent p.Q602Q 0.14 TCGA-CA-6717-01 7 17854475 17854475 T C SNX13 Silent p.K682K 0.14 TCGA-CA-6717-01 7 1785952 1785952 G A ELFN1 Missense_Mutation p.D574N 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 18633627 18633627 G T HDAC9 Missense_Mutation p.K213N 0.09 tolerated(0.09) benign(0.334) TCGA-CA-6717-01 7 19184596 19184596 C T FERD3L Silent p.T130T 0.15 TCGA-CA-6717-01 7 20418799 20418799 G T ITGB8 Missense_Mutation p.D172Y 0.14 deleterious(0.05) probably_damaging(0.993) TCGA-CA-6717-01 7 20445781 20445781 C T ITGB8 Silent p.V670V 0.13 TCGA-CA-6717-01 7 20685493 20685493 G T ABCB5 Nonsense_Mutation p.E265* 0.25 TCGA-CA-6717-01 7 20738078 20738078 C T ABCB5 Missense_Mutation p.P687S 0.26 tolerated(0.38) benign(0.007) TCGA-CA-6717-01 7 21598550 21598550 G T DNAH11 Missense_Mutation p.R209I 0.18 possibly_damaging(0.867) TCGA-CA-6717-01 7 21600741 21600741 G A DNAH11 Missense_Mutation p.S312N 0.22 probably_damaging(0.999) TCGA-CA-6717-01 7 21628891 21628891 A C DNAH11 Missense_Mutation p.D680A 0.27 benign(0.341) TCGA-CA-6717-01 7 21630988 21630988 G A DNAH11 Silent p.T820T 0.09 TCGA-CA-6717-01 7 21646056 21646056 A C DNAH11 Silent p.R1221R 0.12 TCGA-CA-6717-01 7 21675610 21675610 G A DNAH11 Missense_Mutation p.R1546Q 0.20 benign(0.286) TCGA-CA-6717-01 7 21678594 21678594 G T DNAH11 Nonsense_Mutation p.E1624* 0.12 TCGA-CA-6717-01 7 21726732 21726732 A G DNAH11 Silent p.L1886L 0.09 TCGA-CA-6717-01 7 21727011 21727011 T C DNAH11 Silent p.N1937N 0.09 TCGA-CA-6717-01 7 21751402 21751402 T C DNAH11 Silent p.L2310L 0.16 TCGA-CA-6717-01 7 21813536 21813536 G A DNAH11 Silent p.L3092L 0.19 TCGA-CA-6717-01 7 21907532 21907532 T G DNAH11 Missense_Mutation p.L3923V 0.14 benign(0.073) TCGA-CA-6717-01 7 21923988 21923988 T G DNAH11 Missense_Mutation p.L4163R 0.15 probably_damaging(1) TCGA-CA-6717-01 7 22175737 22175737 A G RAPGEF5 Missense_Mutation p.S626P 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 22534411 22534411 A C STEAP1B Missense_Mutation p.L22V 0.09 tolerated_low_confidence(0.15) benign(0.293) TCGA-CA-6717-01 7 22769173 22769173 T G IL6 Missense_Mutation p.F122C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 22986701 22986701 T C FAM126A Intron 0.08 TCGA-CA-6717-01 7 23164844 23164844 C A KLHL7 Intron 0.23 TCGA-CA-6717-01 7 23212573 23212573 T C KLHL7 Silent p.T462T 0.09 TCGA-CA-6717-01 7 23286497 23286497 C T GPNMB Silent p.F7F 0.24 TCGA-CA-6717-01 7 23292988 23292988 A C GPNMB Missense_Mutation p.N45H 0.28 tolerated(0.54) benign(0.003) TCGA-CA-6717-01 7 23293803 23293803 C T GPNMB Missense_Mutation p.A80V 0.17 tolerated(0.22) benign(0.348) TCGA-CA-6717-01 7 23313848 23313848 C T GPNMB 3'UTR 0.19 TCGA-CA-6717-01 7 23545797 23545797 G A TRA2A Missense_Mutation p.R244C 0.22 deleterious(0) unknown(0) TCGA-CA-6717-01 7 23741857 23741857 T C FAM221A 3'UTR 0.22 TCGA-CA-6717-01 7 23768728 23768728 G T STK31 Missense_Mutation p.D115Y 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 2406065 2406065 C T EIF3B Missense_Mutation p.A424V 0.17 tolerated(0.42) benign(0.138) TCGA-CA-6717-01 7 2419093 2419093 C T EIF3B Silent p.F802F 0.22 TCGA-CA-6717-01 7 24749896 24749896 T C DFNA5 Missense_Mutation p.D270G 0.15 deleterious(0) possibly_damaging(0.585) TCGA-CA-6717-01 7 25175624 25175624 G T C7orf31 Missense_Mutation p.F580L 0.09 deleterious(0.05) benign(0.062) TCGA-CA-6717-01 7 25175977 25175977 G T C7orf31 Missense_Mutation p.H463N 0.18 tolerated(0.99) benign(0.002) TCGA-CA-6717-01 7 25176089 25176089 G T C7orf31 Missense_Mutation p.D425E 0.08 tolerated(0.25) possibly_damaging(0.54) TCGA-CA-6717-01 7 25267987 25267987 A C NPVF Missense_Mutation p.I24M 0.14 deleterious(0.03) possibly_damaging(0.882) TCGA-CA-6717-01 7 2565348 2565348 C T LFNG Silent p.G255G 0.16 TCGA-CA-6717-01 7 26224572 26224572 T G NFE2L3 Missense_Mutation p.D418E 0.19 tolerated(0.09) benign(0.194) TCGA-CA-6717-01 7 26225254 26225254 T G NFE2L3 Missense_Mutation p.F646V 0.12 deleterious(0) possibly_damaging(0.874) TCGA-CA-6717-01 7 2649781 2649781 G T IQCE Missense_Mutation p.K691N 0.17 deleterious(0) benign(0.015) TCGA-CA-6717-01 7 27213428 27213428 C A HOXA10 Missense_Mutation p.E166D 0.13 deleterious(0) probably_damaging(0.979) TCGA-CA-6717-01 7 27222446 27222446 A G HOXA11 Missense_Mutation p.L304S 0.08 deleterious(0) probably_damaging(0.975) TCGA-CA-6717-01 7 27689175 27689175 T G HIBADH Missense_Mutation p.N57H 0.29 deleterious(0.03) possibly_damaging(0.65) TCGA-CA-6717-01 7 27832697 27832697 A C TAX1BP1 Missense_Mutation p.T426P 0.18 tolerated(0.09) benign(0.05) TCGA-CA-6717-01 7 27833978 27833978 A G TAX1BP1 Missense_Mutation p.N483D 0.10 tolerated(0.48) benign(0.089) TCGA-CA-6717-01 7 29440182 29440182 A G CHN2 Missense_Mutation p.Y105C 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 29606512 29606512 C A PRR15 3'UTR 0.15 TCGA-CA-6717-01 7 29976287 29976287 C T SCRN1 Missense_Mutation p.G284R 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 30118363 30118363 T G PLEKHA8 Nonsense_Mutation p.L507* 0.20 TCGA-CA-6717-01 7 30486618 30486618 T G NOD1 Missense_Mutation p.K778N 0.14 deleterious(0.01) benign(0.075) TCGA-CA-6717-01 7 30492343 30492343 G T NOD1 Missense_Mutation p.F230L 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6717-01 7 30668181 30668181 G T GARS Nonsense_Mutation p.E569* 0.11 TCGA-CA-6717-01 7 31614327 31614327 G A CCDC129 Missense_Mutation p.R216Q 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 31614336 31614336 T C CCDC129 Missense_Mutation p.I219T 0.08 tolerated(0.13) benign(0.112) TCGA-CA-6717-01 7 31617627 31617627 G A CCDC129 Missense_Mutation p.R276Q 0.11 tolerated(0.65) benign(0.043) TCGA-CA-6717-01 7 31855733 31855733 G A PDE1C Missense_Mutation p.R600C 0.14 deleterious(0) benign(0.394) TCGA-CA-6717-01 7 32909536 32909536 A C KBTBD2 Missense_Mutation p.I431M 0.13 deleterious(0) probably_damaging(0.965) TCGA-CA-6717-01 7 33028137 33028137 G A FKBP9 Silent p.T304T 0.13 TCGA-CA-6717-01 7 33054347 33054347 G A NT5C3A Silent p.L336L 0.09 TCGA-CA-6717-01 7 33054411 33054411 A C NT5C3A Silent p.S314S 0.19 TCGA-CA-6717-01 7 33055360 33055360 G T NT5C3A Missense_Mutation p.D277E 0.08 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 7 33545082 33545082 C A BBS9 Missense_Mutation p.A708D 0.29 tolerated(0.11) benign(0.169) TCGA-CA-6717-01 7 33545139 33545139 T C BBS9 Missense_Mutation p.L727P 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 34091543 34091543 C A BMPER Silent p.S249S 0.20 TCGA-CA-6717-01 7 34192744 34192744 T C BMPER Silent p.G639G 0.14 TCGA-CA-6717-01 7 34917745 34917745 G T NPSR1 Missense_Mutation p.E361D 0.08 tolerated_low_confidence(0.35) benign(0.388) TCGA-CA-6717-01 7 35280649 35280649 T C TBX20 Missense_Mutation p.I219V 0.08 deleterious(0.03) possibly_damaging(0.482) TCGA-CA-6717-01 7 36336797 36336797 G C EEPD1 Splice_Site p.X504_splice 0.10 TCGA-CA-6717-01 7 36373578 36373578 T C KIAA0895 Missense_Mutation p.Q398R 0.14 tolerated(0.32) benign(0.02) TCGA-CA-6717-01 7 37251017 37251017 G A ELMO1 Nonsense_Mutation p.R354* 0.16 TCGA-CA-6717-01 7 37780517 37780517 T G GPR141 Silent p.A174A 0.29 TCGA-CA-6717-01 7 37934180 37934180 C A NME8 Missense_Mutation p.D504E 0.08 tolerated(0.57) benign(0.02) TCGA-CA-6717-01 7 37947132 37947132 C A SFRP4 Missense_Mutation p.K330N 0.06 tolerated_low_confidence(0.09) probably_damaging(0.991) TCGA-CA-6717-01 7 38256676 38256676 G A STARD3NL Silent p.S144S 0.21 TCGA-CA-6717-01 7 38857459 38857459 G A VPS41 Silent p.F136F 0.24 TCGA-CA-6717-01 7 40037225 40037225 G T CDK13 Missense_Mutation p.K668N 0.17 tolerated(0.08) probably_damaging(0.991) TCGA-CA-6717-01 7 40132429 40132429 T A CDK13 Missense_Mutation p.I1094N 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6717-01 7 40314128 40314128 G A SUGCT Missense_Mutation p.R205H 0.11 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 7 4089080 4089080 C A SDK1 Silent p.I901I 0.18 TCGA-CA-6717-01 7 41739626 41739626 A C INHBA Missense_Mutation p.L116R 0.19 tolerated(0.53) possibly_damaging(0.9) TCGA-CA-6717-01 7 4185415 4185415 C T SDK1 Silent p.V1430V 0.12 TCGA-CA-6717-01 7 42004140 42004140 C A GLI3 Missense_Mutation p.D1511Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 42007434 42007434 G A GLI3 Missense_Mutation p.P731S 0.27 tolerated(0.84) benign(0.005) TCGA-CA-6717-01 7 42063163 42063163 T G GLI3 Missense_Mutation p.K467N 0.16 deleterious(0.03) possibly_damaging(0.58) TCGA-CA-6717-01 7 42187903 42187903 C T GLI3 Missense_Mutation p.V97M 0.20 deleterious_low_confidence(0) benign(0.014) TCGA-CA-6717-01 7 4285415 4285415 C T SDK1 Missense_Mutation p.S2120L 0.14 deleterious(0.01) benign(0.012) TCGA-CA-6717-01 7 42950356 42950356 G T C7orf25 Missense_Mutation p.F106L 0.19 deleterious(0.01) possibly_damaging(0.609) TCGA-CA-6717-01 7 42961484 42961484 A C PSMA2 Missense_Mutation p.V168G 0.17 tolerated(0.38) benign(0.029) TCGA-CA-6717-01 7 42971985 42971985 A C MRPL32 5'UTR 0.16 TCGA-CA-6717-01 7 43477673 43477673 C T HECW1 Silent p.R291R 0.21 TCGA-CA-6717-01 7 43601417 43601417 A C HECW1 Silent p.A1571A 0.27 TCGA-CA-6717-01 7 43664257 43664257 C T STK17A Missense_Mutation p.S354L 0.14 tolerated(0.16) benign(0.051) TCGA-CA-6717-01 7 43917876 43917876 T C URGCP Missense_Mutation p.T396A 0.13 tolerated(0.67) benign(0.006) TCGA-CA-6717-01 7 43918702 43918702 C T URGCP Silent p.R120R 0.15 TCGA-CA-6717-01 7 44102456 44102456 C T PGAM2 Silent p.E223E 0.10 TCGA-CA-6717-01 7 44147063 44147063 G A AEBP1 Silent p.Q207Q 0.13 TCGA-CA-6717-01 7 44184880 44184880 C A GCK Splice_Site p.X419_splice 0.11 TCGA-CA-6717-01 7 44579884 44579884 C T NPC1L1 Missense_Mutation p.E38K 0.24 deleterious(0) possibly_damaging(0.834) TCGA-CA-6717-01 7 44609486 44609486 T C DDX56 Missense_Mutation p.N381D 0.21 tolerated(0.06) benign(0.062) TCGA-CA-6717-01 7 44611098 44611098 G A DDX56 Missense_Mutation p.R295C 0.11 deleterious(0.03) benign(0.008) TCGA-CA-6717-01 7 44619002 44619002 T C TMED4 3'UTR 0.14 TCGA-CA-6717-01 7 44663924 44663924 G A OGDH 5'UTR 0.19 TCGA-CA-6717-01 7 45016623 45016623 G A MYO1G Missense_Mutation p.S48F 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 45216915 45216915 T C RAMP3 Silent p.C22C 0.28 TCGA-CA-6717-01 7 45650072 45650072 A G ADCY1 Missense_Mutation p.Y295C 0.11 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 7 45662328 45662328 G A ADCY1 Missense_Mutation p.D336N 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 45753511 45753511 C T ADCY1 Missense_Mutation p.P1093S 0.14 tolerated_low_confidence(0.22) benign(0.001) TCGA-CA-6717-01 7 45931567 45931567 A C IGFBP1 Missense_Mutation p.S186R 0.13 tolerated(0.88) benign(0.002) TCGA-CA-6717-01 7 47698634 47698634 G T C7orf65 Missense_Mutation p.Q88H 0.12 tolerated_low_confidence(0.24) benign(0.387) TCGA-CA-6717-01 7 47860749 47860749 A G PKD1L1 Missense_Mutation p.L2297P 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-CA-6717-01 7 47892816 47892816 C T PKD1L1 Silent p.E1623E 0.22 TCGA-CA-6717-01 7 47947703 47947703 A G PKD1L1 Missense_Mutation p.V458A 0.12 tolerated(0.53) benign(0.014) TCGA-CA-6717-01 7 48269452 48269452 G A ABCA13 Nonsense_Mutation p.W221* 0.10 TCGA-CA-6717-01 7 48288829 48288829 A G ABCA13 Missense_Mutation p.K629R 0.11 benign(0.164) TCGA-CA-6717-01 7 4829562 4829562 T C AP5Z1 Splice_Site p.X602_splice 0.17 TCGA-CA-6717-01 7 48312091 48312091 A C ABCA13 Missense_Mutation p.K943T 0.09 benign(0.01) TCGA-CA-6717-01 7 48312483 48312483 G A ABCA13 Missense_Mutation p.D1074N 0.24 benign(0.01) TCGA-CA-6717-01 7 48314833 48314833 G A ABCA13 Missense_Mutation p.S1857N 0.31 benign(0.218) TCGA-CA-6717-01 7 48315209 48315209 G T ABCA13 Missense_Mutation p.K1982N 0.25 possibly_damaging(0.494) TCGA-CA-6717-01 7 48316056 48316056 G T ABCA13 Nonsense_Mutation p.E2265* 0.22 TCGA-CA-6717-01 7 48337969 48337969 A C ABCA13 Missense_Mutation p.K3069T 0.11 benign(0.141) TCGA-CA-6717-01 7 48391886 48391886 G A ABCA13 Missense_Mutation p.R3497Q 0.10 probably_damaging(1) TCGA-CA-6717-01 7 48563900 48563900 A C ABCA13 Missense_Mutation p.K4703T 0.23 benign(0.029) TCGA-CA-6717-01 7 48626782 48626782 C T ABCA13 Silent p.L4846L 0.29 TCGA-CA-6717-01 7 48685131 48685131 G T ABCA13 3'UTR 0.11 TCGA-CA-6717-01 7 4899937 4899937 A G PAPOLB Missense_Mutation p.V501A 0.13 tolerated(0.21) benign(0.074) TCGA-CA-6717-01 7 50135784 50135784 C A C7orf72 Missense_Mutation p.L35I 0.14 tolerated(0.07) benign(0.328) TCGA-CA-6717-01 7 50191085 50191085 C A C7orf72 Missense_Mutation p.F375L 0.08 deleterious(0.02) probably_damaging(0.971) TCGA-CA-6717-01 7 50450297 50450297 C A IKZF1 Missense_Mutation p.L161I 0.15 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 7 50467747 50467747 C T IKZF1 Missense_Mutation p.R286C 0.10 deleterious(0) probably_damaging(0.994) TCGA-CA-6717-01 7 50513629 50513629 A G FIGNL1 Missense_Mutation p.C453R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 50537802 50537802 C T DDC Missense_Mutation p.G370E 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 50686914 50686914 G T GRB10 Missense_Mutation p.L244I 0.18 tolerated(0.14) benign(0.157) TCGA-CA-6717-01 7 5103382 5103382 T G RBAK-RBAKDN Intron 0.11 TCGA-CA-6717-01 7 51111094 51111094 C A COBL Missense_Mutation p.E464D 0.12 tolerated(0.34) benign(0.093) TCGA-CA-6717-01 7 55210010 55210010 G A EGFR Silent p.Q40Q 0.13 TCGA-CA-6717-01 7 55236288 55236288 C A EGFR Intron 0.20 TCGA-CA-6717-01 7 5541134 5541134 C T FBXL18 Missense_Mutation p.D256N 0.21 tolerated(0.06) probably_damaging(0.965) TCGA-CA-6717-01 7 5568901 5568901 A G ACTB Missense_Mutation p.I85T 0.10 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-CA-6717-01 7 56007182 56007182 C A ZNF713 Missense_Mutation p.S259Y 0.20 tolerated(1) benign(0.072) TCGA-CA-6717-01 7 56084928 56084928 G A PSPH Silent p.N140N 0.09 TCGA-CA-6717-01 7 56126101 56126101 A C CCT6A Missense_Mutation p.K258Q 0.13 deleterious(0.03) possibly_damaging(0.732) TCGA-CA-6717-01 7 57188027 57188027 G A ZNF479 Silent p.S365S 0.10 TCGA-CA-6717-01 7 57199998 57199998 C A ZNF479 Nonsense_Mutation p.E12* 0.09 TCGA-CA-6717-01 7 57529214 57529214 G T ZNF716 Missense_Mutation p.E349D 0.10 deleterious(0.03) probably_damaging(0.951) TCGA-CA-6717-01 7 57529309 57529309 C T ZNF716 Missense_Mutation p.T381I 0.23 deleterious(0.01) benign(0.369) TCGA-CA-6717-01 7 57529366 57529366 G T ZNF716 Missense_Mutation p.R400I 0.27 tolerated(0.46) benign(0.003) TCGA-CA-6717-01 7 57529711 57529711 A C ZNF716 3'UTR 0.38 TCGA-CA-6717-01 7 6018301 6018301 A C PMS2 Missense_Mutation p.V734G 0.17 tolerated(0.06) probably_damaging(0.976) TCGA-CA-6717-01 7 6178769 6178769 A C USP42 Missense_Mutation p.E200D 0.08 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 7 62752369 62752369 G A ZNF733P RNA 0.16 TCGA-CA-6717-01 7 62753076 62753076 T G ZNF733P RNA 0.15 TCGA-CA-6717-01 7 63529340 63529340 G A ZNF727 Silent p.Q25Q 0.10 TCGA-CA-6717-01 7 63538270 63538270 G A ZNF727 Silent p.E281E 0.25 TCGA-CA-6717-01 7 6370102 6370102 C A FAM220A Missense_Mutation p.K228N 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6717-01 7 63726400 63726400 G T ZNF679 Missense_Mutation p.S130I 0.16 deleterious(0.04) benign(0.001) TCGA-CA-6717-01 7 63726512 63726512 A C ZNF679 Missense_Mutation p.K167N 0.10 deleterious(0.04) probably_damaging(0.995) TCGA-CA-6717-01 7 63981864 63981864 C T ZNF680 Missense_Mutation p.R423Q 0.21 tolerated(0.36) benign(0.008) TCGA-CA-6717-01 7 63982709 63982709 T G ZNF680 Missense_Mutation p.E141D 0.18 tolerated(0.17) benign(0.15) TCGA-CA-6717-01 7 64291328 64291328 T C ZNF138 Intron 0.12 TCGA-CA-6717-01 7 64388523 64388523 C T ZNF273 Nonsense_Mutation p.Q273* 0.16 TCGA-CA-6717-01 7 65150578 65150578 G A INTS4L2 RNA 0.17 TCGA-CA-6717-01 7 6628308 6628308 T A ZDHHC4 Missense_Mutation p.F268I 0.09 tolerated(0.17) benign(0.032) TCGA-CA-6717-01 7 6639462 6639462 G T C7orf26 Missense_Mutation p.D195Y 0.21 deleterious(0.01) probably_damaging(0.934) TCGA-CA-6717-01 7 66418240 66418240 C A TMEM248 Missense_Mutation p.L270I 0.10 tolerated(0.08) benign(0.116) TCGA-CA-6717-01 7 66703360 66703360 A T TYW1 Missense_Mutation p.E681D 0.10 tolerated(0.36) benign(0.003) TCGA-CA-6717-01 7 66764381 66764381 G A Y_RNA 5'Flank 0.16 TCGA-CA-6717-01 7 6864104 6864104 T G CCZ1B Missense_Mutation p.E98D 0.11 tolerated(0.35) benign(0.008) TCGA-CA-6717-01 7 69364368 69364368 C A AUTS2 Missense_Mutation p.H136N 0.30 tolerated(0.49) benign(0.073) TCGA-CA-6717-01 7 69755398 69755398 T C AUTS2 Intron 0.09 TCGA-CA-6717-01 7 71130513 71130513 C T WBSCR17 Missense_Mutation p.R400C 0.22 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 7 72419101 72419101 C T POM121 3'UTR 0.09 TCGA-CA-6717-01 7 72663992 72663992 C T GTF2IRD2P1 RNA 0.18 TCGA-CA-6717-01 7 72718780 72718780 T G NSUN5 Missense_Mutation p.K240T 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 72726987 72726987 G A TRIM50 Missense_Mutation p.S465L 0.17 tolerated(0.06) benign(0.342) TCGA-CA-6717-01 7 72742173 72742173 C T FKBP6 5'Flank 0.15 TCGA-CA-6717-01 7 72745721 72745721 T G FKBP6 Missense_Mutation p.F177C 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-CA-6717-01 7 7278337 7278337 T C C1GALT1 Silent p.V224V 0.11 TCGA-CA-6717-01 7 7283215 7283215 T C C1GALT1 Missense_Mutation p.Y317H 0.07 deleterious(0.03) possibly_damaging(0.728) TCGA-CA-6717-01 7 72850054 72850054 A G FZD9 Missense_Mutation p.T573A 0.11 tolerated(0.91) benign(0.001) TCGA-CA-6717-01 7 72883849 72883849 C T BAZ1B Missense_Mutation p.R955H 0.14 tolerated(0.12) benign(0.34) TCGA-CA-6717-01 7 72988810 72988810 G T TBL2 Missense_Mutation p.S55Y 0.07 deleterious(0.02) benign(0.328) TCGA-CA-6717-01 7 73604022 73604022 C T EIF4H Silent p.F89F 0.09 TCGA-CA-6717-01 7 73605588 73605588 T G EIF4H Intron 0.16 TCGA-CA-6717-01 7 73605597 73605597 A C EIF4H Intron 0.20 TCGA-CA-6717-01 7 7410365 7410365 A C COL28A1 Missense_Mutation p.I1019M 0.26 tolerated(0.12) benign(0.004) TCGA-CA-6717-01 7 74105428 74105428 G T GTF2I Missense_Mutation p.D75Y 0.12 deleterious(0) benign(0.429) TCGA-CA-6717-01 7 7412881 7412881 C T COL28A1 Missense_Mutation p.D886N 0.09 tolerated(0.25) benign(0.002) TCGA-CA-6717-01 7 74169841 74169841 A G GTF2I Silent p.R942R 0.16 TCGA-CA-6717-01 7 74564699 74564699 G T GTF2IRD2B Nonsense_Mutation p.E816* 0.16 TCGA-CA-6717-01 7 75028338 75028338 G A TRIM73 Missense_Mutation p.V41I 0.10 tolerated(0.21) benign(0.152) TCGA-CA-6717-01 7 7529078 7529078 C T COL28A1 Missense_Mutation p.G369D 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 75399016 75399016 A C CCL26 Missense_Mutation p.L94V 0.08 deleterious(0.01) possibly_damaging(0.461) TCGA-CA-6717-01 7 75612853 75612853 G T POR Missense_Mutation p.K282N 0.25 deleterious(0) possibly_damaging(0.477) TCGA-CA-6717-01 7 75915480 75915480 A G SRRM3 3'UTR 0.21 TCGA-CA-6717-01 7 7612803 7612803 G T MIOS Missense_Mutation p.D233Y 0.10 deleterious(0.01) probably_damaging(0.911) TCGA-CA-6717-01 7 76908093 76908093 G T CCDC146 Nonsense_Mutation p.E489* 0.17 TCGA-CA-6717-01 7 76991950 76991950 T G GSAP Missense_Mutation p.K300T 0.10 tolerated(0.39) benign(0.026) TCGA-CA-6717-01 7 77011957 77011957 G T GSAP Missense_Mutation p.L154I 0.15 deleterious(0) probably_damaging(0.922) TCGA-CA-6717-01 7 77026296 77026296 T G GSAP Intron 0.26 TCGA-CA-6717-01 7 77210756 77210756 G A PTPN12 Missense_Mutation p.R74Q 0.20 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 7 77210810 77210810 A C PTPN12 Missense_Mutation p.N92T 0.09 deleterious(0.01) benign(0.322) TCGA-CA-6717-01 7 77378844 77378844 G A RSBN1L Silent p.P269P 0.13 TCGA-CA-6717-01 7 77797302 77797302 C T MAGI2 Missense_Mutation p.D843N 0.24 deleterious(0) probably_damaging(0.941) TCGA-CA-6717-01 7 77885693 77885693 G T MAGI2 Silent p.V538V 0.16 TCGA-CA-6717-01 7 80091535 80091535 C T GNAT3 Missense_Mutation p.D272N 0.07 deleterious(0) possibly_damaging(0.88) TCGA-CA-6717-01 7 80300357 80300357 C A CD36 Missense_Mutation p.L295I 0.15 tolerated(0.16) possibly_damaging(0.905) TCGA-CA-6717-01 7 80374074 80374074 C T SEMA3C 3'UTR 0.27 TCGA-CA-6717-01 7 80418661 80418661 C T SEMA3C Missense_Mutation p.A439T 0.16 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 7 80427493 80427493 A C SEMA3C Missense_Mutation p.F349C 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 80433565 80433565 C A SEMA3C Splice_Site p.X220_splice 0.16 TCGA-CA-6717-01 7 80435014 80435014 C T SEMA3C Missense_Mutation p.R200Q 0.29 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 7 8125850 8125850 C A GLCCI1 Silent p.L442L 0.20 TCGA-CA-6717-01 7 8126141 8126141 C A GLCCI1 Silent p.I539I 0.12 TCGA-CA-6717-01 7 81335731 81335731 A C HGF Missense_Mutation p.D543E 0.21 tolerated(0.87) benign(0.001) TCGA-CA-6717-01 7 8153507 8153507 G A ICA1 3'UTR 0.10 TCGA-CA-6717-01 7 81611940 81611940 G A CACNA2D1 Missense_Mutation p.S633L 0.14 tolerated(0.66) benign(0.282) TCGA-CA-6717-01 7 81624209 81624209 C A CACNA2D1 Missense_Mutation p.R570I 0.08 deleterious(0.03) benign(0.251) TCGA-CA-6717-01 7 81626513 81626513 C A CACNA2D1 Missense_Mutation p.E548D 0.18 tolerated(0.08) possibly_damaging(0.696) TCGA-CA-6717-01 7 8181419 8181419 G A ICA1 Missense_Mutation p.R311C 0.13 tolerated(0.08) benign(0) TCGA-CA-6717-01 7 82388028 82388028 A C PCLO Missense_Mutation p.L5098V 0.35 unknown(0) TCGA-CA-6717-01 7 82451856 82451856 T C PCLO Missense_Mutation p.I4916V 0.09 unknown(0) TCGA-CA-6717-01 7 82544080 82544080 C A PCLO Nonsense_Mutation p.E4408* 0.10 TCGA-CA-6717-01 7 82544184 82544184 A G PCLO Missense_Mutation p.M4373T 0.10 unknown(0) TCGA-CA-6717-01 7 82544369 82544369 G A PCLO Silent p.S4311S 0.13 TCGA-CA-6717-01 7 82544685 82544685 A G PCLO Missense_Mutation p.I4206T 0.13 unknown(0) TCGA-CA-6717-01 7 82545158 82545158 T C PCLO Silent p.L4048L 0.14 TCGA-CA-6717-01 7 82545961 82545961 G A PCLO Nonsense_Mutation p.R3781* 0.09 TCGA-CA-6717-01 7 82581234 82581234 G T PCLO Missense_Mutation p.A3012D 0.17 unknown(0) TCGA-CA-6717-01 7 82595255 82595255 C A PCLO Missense_Mutation p.K1283N 0.10 unknown(0) TCGA-CA-6717-01 7 82784148 82784148 T C PCLO Silent p.E603E 0.19 TCGA-CA-6717-01 7 83590806 83590806 G A SEMA3A Missense_Mutation p.R733C 0.08 deleterious(0.04) possibly_damaging(0.891) TCGA-CA-6717-01 7 83592633 83592633 C A SEMA3A Missense_Mutation p.R583I 0.26 deleterious(0) benign(0.038) TCGA-CA-6717-01 7 84628737 84628737 C A SEMA3D 3'UTR 0.13 TCGA-CA-6717-01 7 84628811 84628811 C T SEMA3D Missense_Mutation p.R760Q 0.10 tolerated(0.05) probably_damaging(0.997) TCGA-CA-6717-01 7 84628902 84628902 A G SEMA3D Missense_Mutation p.Y730H 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-CA-6717-01 7 84644433 84644433 C A SEMA3D Missense_Mutation p.D549Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 84651767 84651767 T C SEMA3D Missense_Mutation p.I452V 0.09 tolerated(0.09) benign(0.068) TCGA-CA-6717-01 7 84651854 84651854 G A SEMA3D Missense_Mutation p.R423W 0.11 tolerated(0.1) probably_damaging(0.91) TCGA-CA-6717-01 7 84727259 84727259 A G SEMA3D Silent p.C58C 0.21 TCGA-CA-6717-01 7 86416107 86416107 C T GRM3 Silent p.F333F 0.30 TCGA-CA-6717-01 7 86468833 86468833 G A GRM3 Missense_Mutation p.R668H 0.33 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 86479711 86479711 C A GRM3 Missense_Mutation p.S806Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 7 86539203 86539203 T G KIAA1324L Missense_Mutation p.I762L 0.23 tolerated(0.24) benign(0.283) TCGA-CA-6717-01 7 86542307 86542307 A T KIAA1324L Missense_Mutation p.Y649N 0.10 tolerated(0.05) possibly_damaging(0.773) TCGA-CA-6717-01 7 86574331 86574331 C A KIAA1324L Nonsense_Mutation p.E180* 0.22 TCGA-CA-6717-01 7 87069667 87069667 C T ABCB4 Missense_Mutation p.E470K 0.13 deleterious(0.02) possibly_damaging(0.817) TCGA-CA-6717-01 7 87135221 87135221 T G ABCB1 Missense_Mutation p.S1210R 0.13 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 87183219 87183219 C A ABCB1 Missense_Mutation p.R286I 0.16 tolerated(0.12) benign(0.007) TCGA-CA-6717-01 7 87477213 87477213 C A SLC25A40 Nonsense_Mutation p.E138* 0.21 TCGA-CA-6717-01 7 87533635 87533635 T G DBF4 Missense_Mutation p.F318C 0.14 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 7 87536843 87536843 A G DBF4 Missense_Mutation p.I464V 0.12 tolerated(0.78) benign(0.002) TCGA-CA-6717-01 7 87908641 87908641 C A STEAP4 3'UTR 0.34 TCGA-CA-6717-01 7 87912274 87912274 G A STEAP4 Silent p.D222D 0.24 TCGA-CA-6717-01 7 87913314 87913314 C A STEAP4 Nonsense_Mutation p.E91* 0.13 TCGA-CA-6717-01 7 88423926 88423926 G T C7orf62 Missense_Mutation p.L111I 0.10 tolerated(0.25) possibly_damaging(0.895) TCGA-CA-6717-01 7 88956667 88956667 G T ZNF804B Nonsense_Mutation p.E87* 0.32 TCGA-CA-6717-01 7 88964905 88964905 G T ZNF804B Missense_Mutation p.R870I 0.19 tolerated(0.05) benign(0.006) TCGA-CA-6717-01 7 88965518 88965518 T C ZNF804B Silent p.P1074P 0.17 TCGA-CA-6717-01 7 88965585 88965585 A C ZNF804B Missense_Mutation p.N1097H 0.09 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CA-6717-01 7 88966082 88966082 C A ZNF804B Missense_Mutation p.F1262L 0.22 tolerated(0.89) benign(0.057) TCGA-CA-6717-01 7 89859333 89859333 G T STEAP2 Nonsense_Mutation p.E390* 0.11 TCGA-CA-6717-01 7 89901183 89901183 A C C7orf63 Missense_Mutation p.L257F 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 7 89901221 89901221 A C C7orf63 Missense_Mutation p.K270T 0.09 tolerated(0.13) possibly_damaging(0.466) TCGA-CA-6717-01 7 899922 899922 A G SUN1 Missense_Mutation p.N561S 0.12 deleterious(0.01) probably_damaging(0.935) TCGA-CA-6717-01 7 90045221 90045221 A C CLDN12 3'UTR 0.11 TCGA-CA-6717-01 7 912854 912854 A C SUN1 Missense_Mutation p.K748N 0.11 deleterious(0.01) benign(0.171) TCGA-CA-6717-01 7 91503096 91503096 C A MTERF Nonsense_Mutation p.E338* 0.11 TCGA-CA-6717-01 7 91503633 91503633 T G MTERF Missense_Mutation p.I159L 0.21 tolerated(0.34) possibly_damaging(0.542) TCGA-CA-6717-01 7 91625066 91625066 C A AKAP9 Missense_Mutation p.F294L 0.15 benign(0.137) TCGA-CA-6717-01 7 91630473 91630473 C T AKAP9 Silent p.F414F 0.16 TCGA-CA-6717-01 7 91631540 91631540 T G AKAP9 Missense_Mutation p.F770C 0.15 benign(0.008) TCGA-CA-6717-01 7 91672014 91672014 A G AKAP9 Silent p.E1697E 0.11 TCGA-CA-6717-01 7 91700278 91700278 A G AKAP9 Silent p.V2189V 0.16 TCGA-CA-6717-01 7 91730285 91730285 C T AKAP9 Missense_Mutation p.A3671V 0.10 probably_damaging(0.999) TCGA-CA-6717-01 7 91731944 91731944 C T AKAP9 Nonsense_Mutation p.R3712* 0.15 TCGA-CA-6717-01 7 91742922 91742922 C T CYP51A1 3'UTR 0.10 TCGA-CA-6717-01 7 91788455 91788455 A C LRRD1 Missense_Mutation p.N660K 0.18 deleterious(0.01) possibly_damaging(0.784) TCGA-CA-6717-01 7 91792797 91792797 C T LRRD1 Missense_Mutation p.E574K 0.10 deleterious(0.03) possibly_damaging(0.612) TCGA-CA-6717-01 7 91793010 91793010 G A LRRD1 Missense_Mutation p.P503S 0.23 deleterious(0.02) possibly_damaging(0.717) TCGA-CA-6717-01 7 91793832 91793832 C T LRRD1 Missense_Mutation p.E229K 0.08 deleterious(0.04) probably_damaging(0.981) TCGA-CA-6717-01 7 91793998 91793998 C A LRRD1 Missense_Mutation p.K173N 0.26 tolerated(0.75) benign(0.002) TCGA-CA-6717-01 7 91794394 91794394 G A LRRD1 Silent p.N41N 0.09 TCGA-CA-6717-01 7 91980278 91980278 A G ANKIB1 Missense_Mutation p.K367R 0.15 deleterious(0.04) benign(0.103) TCGA-CA-6717-01 7 92015875 92015875 C T ANKIB1 Missense_Mutation p.S557L 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 92116799 92116799 C T PEX1 Missense_Mutation p.R1275Q 0.16 deleterious(0.02) benign(0.094) TCGA-CA-6717-01 7 92147209 92147209 T G PEX1 Missense_Mutation p.K207T 0.19 tolerated(0.21) benign(0.005) TCGA-CA-6717-01 7 92147524 92147524 G A PEX1 Nonsense_Mutation p.R135* 0.11 TCGA-CA-6717-01 7 92161754 92161754 C T RBM48 Silent p.F113F 0.24 TCGA-CA-6717-01 7 92166214 92166214 A T RBM48 Missense_Mutation p.H356L 0.22 tolerated(0.74) benign(0.035) TCGA-CA-6717-01 7 92247413 92247413 G A CDK6 Silent p.I269I 0.18 TCGA-CA-6717-01 7 92733272 92733272 T C SAMD9 Silent p.R713R 0.15 TCGA-CA-6717-01 7 92733502 92733502 A C SAMD9 Missense_Mutation p.L637V 0.14 tolerated(0.23) benign(0.001) TCGA-CA-6717-01 7 92760636 92760636 G T SAMD9L Missense_Mutation p.S1550Y 0.12 deleterious(0) possibly_damaging(0.785) TCGA-CA-6717-01 7 92761284 92761284 G T SAMD9L Missense_Mutation p.A1334D 0.19 deleterious(0.03) possibly_damaging(0.747) TCGA-CA-6717-01 7 92762713 92762713 T G SAMD9L Missense_Mutation p.N858H 0.09 tolerated(0.1) benign(0.141) TCGA-CA-6717-01 7 92763596 92763596 A C SAMD9L Silent p.T563T 0.18 TCGA-CA-6717-01 7 92763656 92763656 A C SAMD9L Missense_Mutation p.F543L 0.09 tolerated(0.13) benign(0.106) TCGA-CA-6717-01 7 92764165 92764165 C T SAMD9L Missense_Mutation p.V374I 0.13 tolerated(0.06) benign(0.013) TCGA-CA-6717-01 7 92818576 92818576 A C HEPACAM2 3'UTR 0.17 TCGA-CA-6717-01 7 92825189 92825189 G A HEPACAM2 Silent p.F409F 0.11 TCGA-CA-6717-01 7 92844958 92844958 A G HEPACAM2 Silent p.S157S 0.11 TCGA-CA-6717-01 7 92848481 92848481 G A HEPACAM2 Silent p.I121I 0.27 TCGA-CA-6717-01 7 93516733 93516733 A C TFPI2 Missense_Mutation p.F157L 0.22 tolerated(0.33) benign(0.029) TCGA-CA-6717-01 7 93540243 93540243 G T GNGT1 3'UTR 0.16 TCGA-CA-6717-01 7 94040213 94040213 T C COL1A2 Missense_Mutation p.S404P 0.08 probably_damaging(0.976) TCGA-CA-6717-01 7 94054506 94054506 C A COL1A2 Silent p.V917V 0.17 TCGA-CA-6717-01 7 94164823 94164823 G A CASD1 Silent p.S277S 0.09 TCGA-CA-6717-01 7 94294611 94294611 G T PEG10 3'UTR 0.12 TCGA-CA-6717-01 7 94295471 94295471 T G PEG10 3'UTR 0.11 TCGA-CA-6717-01 7 94297890 94297890 A C PEG10 3'UTR 0.13 TCGA-CA-6717-01 7 94298278 94298278 G T PEG10 3'UTR 0.20 TCGA-CA-6717-01 7 94540745 94540745 G A PPP1R9A Silent p.S440S 0.12 TCGA-CA-6717-01 7 94937330 94937330 C T PON1 Missense_Mutation p.D231N 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-CA-6717-01 7 94940804 94940804 C T PON1 Silent p.S152S 0.15 TCGA-CA-6717-01 7 94991763 94991763 C T PON3 Missense_Mutation p.D273N 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 7 95001532 95001532 T C PON3 Missense_Mutation p.D107G 0.16 deleterious(0.01) possibly_damaging(0.859) TCGA-CA-6717-01 7 95041730 95041730 C A PON2 Missense_Mutation p.M87I 0.16 tolerated(0.08) benign(0.007) TCGA-CA-6717-01 7 95221874 95221874 T G PDK4 Missense_Mutation p.S189R 0.23 tolerated(0.94) benign(0.002) TCGA-CA-6717-01 7 95224455 95224455 C A PDK4 Missense_Mutation p.R51I 0.10 deleterious(0.03) benign(0.429) TCGA-CA-6717-01 7 95606853 95606853 T G DYNC1I1 Missense_Mutation p.S191A 0.07 tolerated(0.99) benign(0) TCGA-CA-6717-01 7 96653802 96653802 G T DLX5 Missense_Mutation p.S45Y 0.13 deleterious(0.02) possibly_damaging(0.761) TCGA-CA-6717-01 7 96810339 96810339 T G ACN9 Missense_Mutation p.L64V 0.10 deleterious(0.03) possibly_damaging(0.837) TCGA-CA-6717-01 7 97488685 97488685 C T ASNS Silent p.A171A 0.08 TCGA-CA-6717-01 7 97614115 97614115 C T OCM2 3'UTR 0.23 TCGA-CA-6717-01 7 97841963 97841963 C T BHLHA15 Silent p.I114I 0.11 TCGA-CA-6717-01 7 97922015 97922015 G A BRI3 3'Flank 0.25 TCGA-CA-6717-01 7 98256578 98256578 G T NPTX2 Missense_Mutation p.E330D 0.21 tolerated(0.31) benign(0.073) TCGA-CA-6717-01 7 98563491 98563491 G A TRRAP Silent p.K2376K 0.11 TCGA-CA-6717-01 7 98645333 98645333 C T SMURF1 Missense_Mutation p.E402K 0.17 tolerated(0.6) possibly_damaging(0.824) TCGA-CA-6717-01 7 99084495 99084495 G T ZNF789 Missense_Mutation p.R221I 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-CA-6717-01 7 99085147 99085147 T G ZNF789 3'UTR 0.11 TCGA-CA-6717-01 7 99128759 99128759 A C ZKSCAN5 Missense_Mutation p.K469N 0.09 tolerated(0.15) possibly_damaging(0.478) TCGA-CA-6717-01 7 99128777 99128777 A C ZKSCAN5 Missense_Mutation p.K475N 0.10 deleterious(0.01) possibly_damaging(0.632) TCGA-CA-6717-01 7 99145711 99145711 G A FAM200A Missense_Mutation p.T107I 0.17 tolerated(0.08) possibly_damaging(0.658) TCGA-CA-6717-01 7 99170345 99170345 T C ZNF655 Missense_Mutation p.I240T 0.10 deleterious(0.03) benign(0.291) TCGA-CA-6717-01 7 99170926 99170926 C A ZNF655 Missense_Mutation p.Q434K 0.14 deleterious(0.02) benign(0.092) TCGA-CA-6717-01 7 99312198 99312198 G A CYP3A7 Missense_Mutation p.R260C 0.13 deleterious(0) probably_damaging(0.92) TCGA-CA-6717-01 7 99359747 99359747 T G CYP3A4 Missense_Mutation p.K390N 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 7 99381664 99381664 A C CYP3A4 Missense_Mutation p.L14R 0.19 deleterious(0) probably_damaging(0.952) TCGA-CA-6717-01 7 99461266 99461266 C A CYP3A43 Missense_Mutation p.L455I 0.16 tolerated(0.12) benign(0.086) TCGA-CA-6717-01 7 99565843 99565843 T C AZGP1 Missense_Mutation p.E183G 0.09 deleterious(0) possibly_damaging(0.832) TCGA-CA-6717-01 7 99662304 99662304 C A ZSCAN21 3'UTR 0.23 TCGA-CA-6717-01 7 99764278 99764278 C T GAL3ST4 Silent p.Q92Q 0.33 TCGA-CA-6717-01 7 99796887 99796887 C T STAG3 Silent p.L490L 0.18 TCGA-CA-6717-01 7 99964982 99964982 G A PILRB Silent p.A222A 0.26 TCGA-CA-6717-01 8 100026049 100026049 G T VPS13B Missense_Mutation p.M11I 0.15 deleterious(0.01) benign(0) TCGA-CA-6717-01 8 100146874 100146874 A C VPS13B Missense_Mutation p.Q407H 0.10 deleterious(0.05) possibly_damaging(0.781) TCGA-CA-6717-01 8 100520130 100520130 C A VPS13B Missense_Mutation p.F1430L 0.19 tolerated(0.52) possibly_damaging(0.483) TCGA-CA-6717-01 8 100654442 100654442 T C VPS13B Missense_Mutation p.L1900P 0.09 deleterious(0.03) probably_damaging(0.979) TCGA-CA-6717-01 8 100847786 100847786 T A VPS13B Silent p.V3279V 0.18 TCGA-CA-6717-01 8 100866024 100866024 G T VPS13B Missense_Mutation p.L3494F 0.17 tolerated(0.1) possibly_damaging(0.587) TCGA-CA-6717-01 8 100990247 100990247 C A RGS22 Missense_Mutation p.K1139N 0.20 tolerated(0.16) possibly_damaging(0.614) TCGA-CA-6717-01 8 10102726 10102726 C T MSRA Silent p.V108V 0.08 TCGA-CA-6717-01 8 101065196 101065196 C A RGS22 Missense_Mutation p.R508I 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 101075907 101075907 C A RGS22 Missense_Mutation p.K363N 0.24 tolerated(0.16) benign(0.003) TCGA-CA-6717-01 8 101083707 101083707 C A RGS22 Nonsense_Mutation p.G162* 0.15 TCGA-CA-6717-01 8 101092515 101092515 T G RGS22 Missense_Mutation p.Q62H 0.14 tolerated(0.19) benign(0.007) TCGA-CA-6717-01 8 101153557 101153557 T G FBXO43 Missense_Mutation p.N309H 0.12 deleterious(0.03) benign(0.049) TCGA-CA-6717-01 8 101154042 101154042 A C FBXO43 Missense_Mutation p.I147S 0.18 tolerated(0.07) benign(0.118) TCGA-CA-6717-01 8 101157412 101157412 T C FBXO43 5'UTR 0.29 TCGA-CA-6717-01 8 101206375 101206375 T G SPAG1 Missense_Mutation p.N325K 0.12 tolerated(0.62) benign(0.001) TCGA-CA-6717-01 8 101300215 101300215 C A RNF19A Missense_Mutation p.R63I 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6717-01 8 101596340 101596340 A G SNX31 Missense_Mutation p.M390T 0.08 deleterious(0.03) probably_damaging(0.94) TCGA-CA-6717-01 8 101629882 101629882 A C SNX31 Missense_Mutation p.I133S 0.12 deleterious(0.01) benign(0.066) TCGA-CA-6717-01 8 102570988 102570988 G A GRHL2 Missense_Mutation p.R209H 0.11 deleterious(0.01) probably_damaging(0.954) TCGA-CA-6717-01 8 102611376 102611376 G A GRHL2 Silent p.A365A 0.09 TCGA-CA-6717-01 8 102643910 102643910 A G GRHL2 Missense_Mutation p.K435E 0.15 deleterious(0) probably_damaging(0.969) TCGA-CA-6717-01 8 102701626 102701626 A G NCALD Missense_Mutation p.S165P 0.12 deleterious(0) probably_damaging(0.988) TCGA-CA-6717-01 8 103220310 103220310 G T RRM2B 3'UTR 0.26 TCGA-CA-6717-01 8 103289240 103289240 C A UBR5 Nonsense_Mutation p.G2157* 0.08 TCGA-CA-6717-01 8 103307499 103307499 G A UBR5 Missense_Mutation p.R1331C 0.18 tolerated(0.06) probably_damaging(0.988) TCGA-CA-6717-01 8 103307522 103307522 C A UBR5 Missense_Mutation p.R1323I 0.09 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 8 103338852 103338852 C A UBR5 Missense_Mutation p.E507D 0.10 tolerated(0.25) possibly_damaging(0.759) TCGA-CA-6717-01 8 103572704 103572704 T G ODF1 Missense_Mutation p.I115M 0.28 tolerated_low_confidence(0.95) benign(0.004) TCGA-CA-6717-01 8 10396160 10396160 T C PRSS55 Missense_Mutation p.F306L 0.13 tolerated(0.22) benign(0.026) TCGA-CA-6717-01 8 104412536 104412536 G A SLC25A32 3'UTR 0.31 TCGA-CA-6717-01 8 104415418 104415418 A G SLC25A32 Missense_Mutation p.Y176H 0.22 tolerated(0.54) benign(0.003) TCGA-CA-6717-01 8 104442846 104442846 C A DCAF13 Missense_Mutation p.L363I 0.12 tolerated(0.38) benign(0.06) TCGA-CA-6717-01 8 10464663 10464663 T C RP1L1 Silent p.E2315E 0.11 TCGA-CA-6717-01 8 10467546 10467546 C T RP1L1 Silent p.A1354A 0.37 TCGA-CA-6717-01 8 10470381 10470381 C T RP1L1 Silent p.T409T 0.18 TCGA-CA-6717-01 8 105010475 105010475 G A RIMS2 Intron 0.12 TCGA-CA-6717-01 8 105263973 105263973 C A RIMS2 Silent p.T1325T 0.09 TCGA-CA-6717-01 8 105360771 105360771 C T DCSTAMP Intron 0.25 TCGA-CA-6717-01 8 105440237 105440237 G A DPYS Missense_Mutation p.R355W 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 105459585 105459585 C A DPYS Missense_Mutation p.Q190H 0.09 tolerated(0.05) possibly_damaging(0.898) TCGA-CA-6717-01 8 105459678 105459678 C A DPYS Missense_Mutation p.K159N 0.08 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 8 105503017 105503017 G A LRP12 Nonsense_Mutation p.R822* 0.09 TCGA-CA-6717-01 8 105511689 105511689 C A LRP12 Nonsense_Mutation p.E111* 0.22 TCGA-CA-6717-01 8 10583418 10583418 C T SOX7 Missense_Mutation p.D385N 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-CA-6717-01 8 10583478 10583478 C T SOX7 Missense_Mutation p.D365N 0.27 deleterious(0.01) possibly_damaging(0.67) TCGA-CA-6717-01 8 10587767 10587767 C T SOX7 Silent p.E59E 0.22 TCGA-CA-6717-01 8 106813338 106813338 C T ZFPM2 Missense_Mutation p.T343I 0.09 tolerated(0.11) probably_damaging(0.983) TCGA-CA-6717-01 8 106814636 106814636 C T ZFPM2 Missense_Mutation p.P776S 0.13 tolerated(0.68) benign(0) TCGA-CA-6717-01 8 107695484 107695484 G A OXR1 Missense_Mutation p.E122K 0.22 tolerated(0.74) probably_damaging(0.981) TCGA-CA-6717-01 8 109215250 109215250 T G EIF3E Missense_Mutation p.N421H 0.09 tolerated(0.13) benign(0.024) TCGA-CA-6717-01 8 109796543 109796543 C T TMEM74 Missense_Mutation p.R262Q 0.09 deleterious(0.04) benign(0.066) TCGA-CA-6717-01 8 109797264 109797264 T C TMEM74 Missense_Mutation p.S22G 0.11 tolerated(0.41) benign(0.004) TCGA-CA-6717-01 8 110255244 110255244 C A NUDCD1 Missense_Mutation p.E582D 0.23 tolerated(0.48) benign(0.002) TCGA-CA-6717-01 8 110396303 110396303 A C PKHD1L1 Missense_Mutation p.K141T 0.33 tolerated(0.36) benign(0.145) TCGA-CA-6717-01 8 110408291 110408291 C T PKHD1L1 Nonsense_Mutation p.R283* 0.34 TCGA-CA-6717-01 8 110412568 110412568 G T PKHD1L1 Missense_Mutation p.D426Y 0.31 deleterious(0) possibly_damaging(0.879) TCGA-CA-6717-01 8 110416853 110416853 C T PKHD1L1 Nonsense_Mutation p.R482* 0.09 TCGA-CA-6717-01 8 110416875 110416875 A G PKHD1L1 Missense_Mutation p.Q489R 0.10 deleterious(0) possibly_damaging(0.603) TCGA-CA-6717-01 8 110447418 110447418 G T PKHD1L1 Splice_Site p.X1114_splice 0.14 TCGA-CA-6717-01 8 110447439 110447439 A C PKHD1L1 Missense_Mutation p.I1121L 0.10 tolerated(0.4) benign(0.238) TCGA-CA-6717-01 8 110452953 110452953 C A PKHD1L1 Missense_Mutation p.S1324Y 0.24 deleterious(0.04) possibly_damaging(0.447) TCGA-CA-6717-01 8 110455290 110455290 C A PKHD1L1 Silent p.T1503T 0.24 TCGA-CA-6717-01 8 110457483 110457483 A G PKHD1L1 Silent p.E1795E 0.20 TCGA-CA-6717-01 8 110476889 110476889 G A PKHD1L1 Missense_Mutation p.E2610K 0.35 deleterious(0.04) possibly_damaging(0.576) TCGA-CA-6717-01 8 110489555 110489555 C A PKHD1L1 Missense_Mutation p.L3007I 0.20 deleterious(0.02) benign(0.02) TCGA-CA-6717-01 8 110498938 110498938 A G PKHD1L1 Missense_Mutation p.I3256M 0.09 deleterious(0.02) benign(0.11) TCGA-CA-6717-01 8 110516598 110516598 C A PKHD1L1 Missense_Mutation p.T3624N 0.20 tolerated(0.27) possibly_damaging(0.78) TCGA-CA-6717-01 8 110539071 110539071 T G PKHD1L1 Silent p.T4181T 0.12 TCGA-CA-6717-01 8 110542346 110542346 A C PKHD1L1 3'UTR 0.13 TCGA-CA-6717-01 8 11058425 11058425 C T XKR6 Missense_Mutation p.D142N 0.45 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 110588055 110588055 A C SYBU Missense_Mutation p.Y358D 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 11189250 11189250 C A SLC35G5 Missense_Mutation p.S212Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 11301714 11301714 C T FAM167A Silent p.A69A 0.27 TCGA-CA-6717-01 8 113236952 113236952 T C CSMD3 3'UTR 0.19 TCGA-CA-6717-01 8 113275952 113275952 A G CSMD3 Missense_Mutation p.S3260P 0.08 tolerated(0.31) benign(0.05) TCGA-CA-6717-01 8 113299343 113299343 C A CSMD3 Missense_Mutation p.R3094I 0.19 tolerated(0.07) probably_damaging(0.968) TCGA-CA-6717-01 8 113318337 113318337 A G CSMD3 Missense_Mutation p.F2657S 0.14 tolerated(0.55) probably_damaging(0.949) TCGA-CA-6717-01 8 113326779 113326779 G C CSMD3 Missense_Mutation p.D2476E 0.14 tolerated(0.26) benign(0.019) TCGA-CA-6717-01 8 113421173 113421173 T G CSMD3 Missense_Mutation p.L1828F 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 8 113516100 113516100 C A CSMD3 Nonsense_Mutation p.E1668* 0.11 TCGA-CA-6717-01 8 113516127 113516127 G T CSMD3 Missense_Mutation p.Q1659K 0.11 tolerated(0.22) probably_damaging(0.966) TCGA-CA-6717-01 8 113657449 113657449 A G CSMD3 Missense_Mutation p.C1067R 0.12 deleterious(0) probably_damaging(0.916) TCGA-CA-6717-01 8 113662510 113662510 C A CSMD3 Missense_Mutation p.D1025Y 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-CA-6717-01 8 113702226 113702226 C A CSMD3 Nonsense_Mutation p.E676* 0.08 TCGA-CA-6717-01 8 113988074 113988074 G A CSMD3 Missense_Mutation p.T445I 0.16 tolerated(0.11) benign(0) TCGA-CA-6717-01 8 114031325 114031325 C T CSMD3 Missense_Mutation p.R334Q 0.27 deleterious(0.04) possibly_damaging(0.906) TCGA-CA-6717-01 8 11420539 11420539 T C BLK Missense_Mutation p.V411A 0.20 tolerated(0.44) benign(0.065) TCGA-CA-6717-01 8 114326896 114326896 C A CSMD3 Missense_Mutation p.R102I 0.11 tolerated(0.06) benign(0.288) TCGA-CA-6717-01 8 114448976 114448976 C A CSMD3 Missense_Mutation p.K36N 0.16 deleterious_low_confidence(0.02) benign(0.003) TCGA-CA-6717-01 8 116427243 116427243 G A TRPS1 Missense_Mutation p.R965C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 116599423 116599423 C T TRPS1 Silent p.E835E 0.14 TCGA-CA-6717-01 8 116616298 116616298 G T TRPS1 Nonsense_Mutation p.S633* 0.30 TCGA-CA-6717-01 8 116631403 116631403 T C TRPS1 Missense_Mutation p.N308D 0.22 tolerated_low_confidence(0.06) benign(0.1) TCGA-CA-6717-01 8 116632249 116632249 C A TRPS1 Missense_Mutation p.A26S 0.20 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-CA-6717-01 8 117875449 117875449 C T RAD21 Missense_Mutation p.R65Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 118169933 118169933 T C SLC30A8 Missense_Mutation p.I141T 0.11 tolerated(0.2) probably_damaging(0.974) TCGA-CA-6717-01 8 11831511 11831511 G A DEFB136 Silent p.L58L 0.17 TCGA-CA-6717-01 8 11831560 11831560 G T DEFB136 Missense_Mutation p.F41L 0.21 deleterious(0.01) possibly_damaging(0.801) TCGA-CA-6717-01 8 119936814 119936814 T C TNFRSF11B Silent p.K335K 0.07 TCGA-CA-6717-01 8 120118250 120118250 A G COLEC10 Silent p.G218G 0.21 TCGA-CA-6717-01 8 120233914 120233914 A T MAL2 Missense_Mutation p.T74S 0.08 tolerated(0.17) benign(0.253) TCGA-CA-6717-01 8 120598432 120598432 A G ENPP2 Missense_Mutation p.V506A 0.17 tolerated(0.69) benign(0.23) TCGA-CA-6717-01 8 120598455 120598455 T C ENPP2 Silent p.L498L 0.18 TCGA-CA-6717-01 8 120606071 120606071 T G ENPP2 Missense_Mutation p.K386N 0.14 tolerated(0.97) benign(0.011) TCGA-CA-6717-01 8 120744063 120744063 G A TAF2 3'UTR 0.15 TCGA-CA-6717-01 8 120795644 120795644 A G TAF2 Missense_Mutation p.S697P 0.09 tolerated(0.2) benign(0.017) TCGA-CA-6717-01 8 120803692 120803692 A G TAF2 Missense_Mutation p.S429P 0.09 tolerated(0.32) benign(0.002) TCGA-CA-6717-01 8 121209180 121209180 G A COL14A1 Missense_Mutation p.R196Q 0.22 tolerated(0.98) benign(0.133) TCGA-CA-6717-01 8 121239471 121239471 G T COL14A1 Nonsense_Mutation p.E673* 0.24 TCGA-CA-6717-01 8 121243717 121243717 G T COL14A1 Nonsense_Mutation p.G737* 0.18 TCGA-CA-6717-01 8 121243822 121243822 G T COL14A1 Missense_Mutation p.A772S 0.16 tolerated(0.27) benign(0.122) TCGA-CA-6717-01 8 121298165 121298165 G A COL14A1 Missense_Mutation p.E1345K 0.23 deleterious(0.04) benign(0.148) TCGA-CA-6717-01 8 121528182 121528182 G A MTBP Missense_Mutation p.R666Q 0.20 tolerated(0.25) benign(0.007) TCGA-CA-6717-01 8 123965405 123965405 C A ZHX2 Missense_Mutation p.S552Y 0.32 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 124132413 124132413 A T TBC1D31 Missense_Mutation p.I519F 0.12 deleterious(0.01) possibly_damaging(0.493) TCGA-CA-6717-01 8 124219413 124219413 G A FAM83A Missense_Mutation p.G264R 0.17 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 8 124265729 124265729 C T ZHX1 Missense_Mutation p.E820K 0.17 deleterious(0.04) probably_damaging(0.91) TCGA-CA-6717-01 8 124266496 124266496 A C ZHX1 Missense_Mutation p.F564C 0.15 deleterious(0.03) possibly_damaging(0.653) TCGA-CA-6717-01 8 124518759 124518759 A G FBXO32 Missense_Mutation p.I236T 0.28 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 8 124545463 124545464 - T FBXO32 Frame_Shift_Ins p.W83Mfs*10 0.20 TCGA-CA-6717-01 8 124714948 124714948 G T ANXA13 Silent p.I81I 0.17 TCGA-CA-6717-01 8 124799557 124799557 G A FAM91A1 Missense_Mutation p.A379T 0.18 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 8 124818437 124818437 A G FAM91A1 Missense_Mutation p.D667G 0.23 tolerated(0.29) benign(0.018) TCGA-CA-6717-01 8 124988235 124988235 A C FER1L6 Missense_Mutation p.S261R 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 124992841 124992841 A C FER1L6 Missense_Mutation p.E400D 0.09 tolerated(0.23) possibly_damaging(0.846) TCGA-CA-6717-01 8 125132017 125132017 G A FER1L6 Missense_Mutation p.V1854I 0.10 tolerated(0.47) benign(0.053) TCGA-CA-6717-01 8 125463325 125463325 C A TRMT12 Missense_Mutation p.P53T 0.22 tolerated(0.09) benign(0.199) TCGA-CA-6717-01 8 125463584 125463584 A C TRMT12 Missense_Mutation p.N139T 0.18 deleterious(0) benign(0.155) TCGA-CA-6717-01 8 125988946 125988946 C A ZNF572 Missense_Mutation p.H146N 0.19 tolerated(0.42) benign(0.081) TCGA-CA-6717-01 8 125988953 125988953 G A ZNF572 Missense_Mutation p.R148H 0.20 tolerated(0.16) probably_damaging(0.989) TCGA-CA-6717-01 8 126030884 126030885 - T SQLE Frame_Shift_Ins p.Y455Lfs*21 0.12 TCGA-CA-6717-01 8 128752784 128752784 C T MYC Silent p.C315C 0.27 TCGA-CA-6717-01 8 128753105 128753105 A G MYC Silent p.Q422Q 0.10 TCGA-CA-6717-01 8 12880735 12880735 C A KIAA1456 3'UTR 0.10 TCGA-CA-6717-01 8 12883182 12883182 A T KIAA1456 3'UTR 0.14 TCGA-CA-6717-01 8 12883532 12883532 A G KIAA1456 3'UTR 0.32 TCGA-CA-6717-01 8 12885546 12885546 A C KIAA1456 3'UTR 0.10 TCGA-CA-6717-01 8 12885705 12885705 T C KIAA1456 3'UTR 0.21 TCGA-CA-6717-01 8 12886364 12886364 A G KIAA1456 3'UTR 0.16 TCGA-CA-6717-01 8 12952598 12952598 A T DLC1 Missense_Mutation p.D1108E 0.13 deleterious(0.02) benign(0.027) TCGA-CA-6717-01 8 12960317 12960317 A C DLC1 Missense_Mutation p.I516M 0.15 deleterious(0) possibly_damaging(0.646) TCGA-CA-6717-01 8 130763815 130763815 C A GSDMC Splice_Site p.X306_splice 0.17 TCGA-CA-6717-01 8 130765061 130765061 C T GSDMC Missense_Mutation p.E243K 0.15 tolerated(0.89) benign(0) TCGA-CA-6717-01 8 130788398 130788398 C T GSDMC Silent p.E118E 0.09 TCGA-CA-6717-01 8 131370359 131370359 G T ASAP1 Missense_Mutation p.F30L 0.17 deleterious(0.01) benign(0.01) TCGA-CA-6717-01 8 13162706 13162706 A G DLC1 Intron 0.10 TCGA-CA-6717-01 8 131812678 131812678 G A ADCY8 Silent p.F1018F 0.14 TCGA-CA-6717-01 8 131896894 131896894 G A ADCY8 Silent p.I675I 0.18 TCGA-CA-6717-01 8 131896947 131896947 A C ADCY8 Missense_Mutation p.L658V 0.10 tolerated(0.49) possibly_damaging(0.799) TCGA-CA-6717-01 8 131921974 131921974 G A ADCY8 Silent p.L540L 0.22 TCGA-CA-6717-01 8 132982784 132982784 C T EFR3A Silent p.F351F 0.20 TCGA-CA-6717-01 8 133044195 133044195 C T OC90 Missense_Mutation p.E322K 0.22 deleterious(0) possibly_damaging(0.801) TCGA-CA-6717-01 8 133045340 133045340 G T OC90 Missense_Mutation p.L269M 0.10 tolerated(0.15) probably_damaging(0.942) TCGA-CA-6717-01 8 133045342 133045342 G T OC90 Missense_Mutation p.S268Y 0.15 deleterious(0) probably_damaging(0.971) TCGA-CA-6717-01 8 133099967 133099967 G T HHLA1 Missense_Mutation p.F239L 0.16 tolerated(0.1) benign(0.054) TCGA-CA-6717-01 8 133142035 133142035 C A KCNQ3 Missense_Mutation p.S698I 0.19 tolerated(0.08) benign(0.081) TCGA-CA-6717-01 8 133637640 133637640 C A LRRC6 Missense_Mutation p.K238N 0.14 tolerated(0.18) benign(0.003) TCGA-CA-6717-01 8 133764234 133764234 A G TMEM71 Silent p.C37C 0.13 TCGA-CA-6717-01 8 133883595 133883595 C A TG Missense_Mutation p.L93M 0.15 deleterious(0.02) probably_damaging(0.914) TCGA-CA-6717-01 8 133899372 133899372 C T TG Silent p.I585I 0.31 TCGA-CA-6717-01 8 134225274 134225274 C T WISP1 Silent p.C79C 0.18 TCGA-CA-6717-01 8 134239851 134239851 C T WISP1 Silent p.V334V 0.14 TCGA-CA-6717-01 8 135612794 135612794 C T ZFAT Missense_Mutation p.R787H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 139163809 139163809 C A FAM135B Missense_Mutation p.R970I 0.07 deleterious(0.05) benign(0.303) TCGA-CA-6717-01 8 139263158 139263158 G A FAM135B Silent p.F156F 0.10 TCGA-CA-6717-01 8 139380180 139380180 T G FAM135B Missense_Mutation p.K16T 0.09 deleterious(0) benign(0.024) TCGA-CA-6717-01 8 139833593 139833593 T G COL22A1 Missense_Mutation p.K344T 0.13 unknown(0) TCGA-CA-6717-01 8 141525223 141525223 A C CHRAC1 Splice_Site p.X92_splice 0.10 TCGA-CA-6717-01 8 141900851 141900851 C T PTK2 5'UTR 0.25 TCGA-CA-6717-01 8 142487909 142487909 G T MROH5 3'UTR 0.12 TCGA-CA-6717-01 8 143782019 143782019 A C LY6K Missense_Mutation p.Q25P 0.08 deleterious(0.03) benign(0.078) TCGA-CA-6717-01 8 143955782 143955782 G T CYP11B1 3'UTR 0.10 TCGA-CA-6717-01 8 144351627 144351627 T G GLI4 Missense_Mutation p.S21A 0.13 tolerated(0.28) benign(0.037) TCGA-CA-6717-01 8 144358350 144358350 C T GLI4 Silent p.F169F 0.25 TCGA-CA-6717-01 8 144732974 144732974 G T ZNF623 Missense_Mutation p.R311I 0.19 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 8 145058753 145058753 C T PARP10 Missense_Mutation p.A473T 0.22 tolerated(0.3) benign(0.159) TCGA-CA-6717-01 8 145107942 145107942 C A OPLAH Missense_Mutation p.D988Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 8 145640663 145640663 G A SLC39A4 Silent p.F205F 0.10 TCGA-CA-6717-01 8 146062844 146062844 G A ZNF7 Missense_Mutation p.D67N 0.23 tolerated(0.05) possibly_damaging(0.643) TCGA-CA-6717-01 8 146066961 146066961 A G ZNF7 Missense_Mutation p.T157A 0.08 tolerated(0.68) benign(0.001) TCGA-CA-6717-01 8 146278531 146278531 G T C8orf33 Missense_Mutation p.Q134H 0.10 deleterious(0) probably_damaging(0.989) TCGA-CA-6717-01 8 15480588 15480588 G T TUSC3 Splice_Site p.X47_splice 0.16 TCGA-CA-6717-01 8 15605906 15605906 C T TUSC3 Silent p.G320G 0.12 TCGA-CA-6717-01 8 16026263 16026263 C A MSR1 Nonsense_Mutation p.E112* 0.16 TCGA-CA-6717-01 8 1626488 1626488 C T DLGAP2 Silent p.F719F 0.12 TCGA-CA-6717-01 8 1626744 1626744 T G DLGAP2 Missense_Mutation p.W805G 0.14 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 8 17053088 17053088 C T ZDHHC2 Nonsense_Mutation p.R110* 0.22 TCGA-CA-6717-01 8 17065574 17065574 C T ZDHHC2 Silent p.L235L 0.23 TCGA-CA-6717-01 8 17092267 17092267 A C CNOT7 Missense_Mutation p.I192M 0.34 deleterious(0.01) possibly_damaging(0.514) TCGA-CA-6717-01 8 17092331 17092331 T G CNOT7 Missense_Mutation p.N171T 0.22 tolerated(0.3) benign(0.055) TCGA-CA-6717-01 8 17612273 17612273 A G MTUS1 Silent p.D348D 0.14 TCGA-CA-6717-01 8 17612410 17612410 T C MTUS1 Missense_Mutation p.N303D 0.14 tolerated(0.1) benign(0.075) TCGA-CA-6717-01 8 17726446 17726446 A C FGL1 Missense_Mutation p.N190K 0.27 tolerated(0.2) benign(0.016) TCGA-CA-6717-01 8 18079512 18079512 A G NAT1 Intron 0.08 TCGA-CA-6717-01 8 18513175 18513175 C A PSD3 Missense_Mutation p.K731N 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 1877461 1877461 T G ARHGEF10 Missense_Mutation p.I977M 0.10 deleterious(0) possibly_damaging(0.583) TCGA-CA-6717-01 8 1877466 1877466 A C ARHGEF10 Missense_Mutation p.K979T 0.10 tolerated(0.09) possibly_damaging(0.786) TCGA-CA-6717-01 8 1905453 1905453 C A ARHGEF10 3'UTR 0.31 TCGA-CA-6717-01 8 19218776 19218776 G T SH2D4A Silent p.T219T 0.08 TCGA-CA-6717-01 8 19277979 19277979 G A CSGALNACT1 Missense_Mutation p.S335F 0.16 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 8 195244 195244 T G ZNF596 Missense_Mutation p.Y133D 0.27 tolerated(0.06) benign(0) TCGA-CA-6717-01 8 1952565 1952565 G A KBTBD11 3'UTR 0.13 TCGA-CA-6717-01 8 1952581 1952581 C T KBTBD11 3'UTR 0.15 TCGA-CA-6717-01 8 1953434 1953434 G T KBTBD11 3'UTR 0.19 TCGA-CA-6717-01 8 1954251 1954251 A C KBTBD11 3'UTR 0.09 TCGA-CA-6717-01 8 1954659 1954659 G A KBTBD11 3'UTR 0.25 TCGA-CA-6717-01 8 20110315 20110315 G A LZTS1 Missense_Mutation p.A376V 0.13 tolerated(0.17) benign(0.069) TCGA-CA-6717-01 8 2026835 2026835 A C MYOM2 Missense_Mutation p.N428T 0.15 tolerated(0.29) benign(0.019) TCGA-CA-6717-01 8 2037867 2037867 G A MYOM2 Missense_Mutation p.A561T 0.14 tolerated(1) possibly_damaging(0.529) TCGA-CA-6717-01 8 2044226 2044226 A C MYOM2 Missense_Mutation p.K755N 0.10 tolerated(0.49) benign(0.155) TCGA-CA-6717-01 8 2064046 2064046 G T MYOM2 Missense_Mutation p.R1121M 0.17 deleterious(0.01) possibly_damaging(0.746) TCGA-CA-6717-01 8 21964961 21964961 C A NUDT18 Silent p.V274V 0.16 TCGA-CA-6717-01 8 21976713 21976713 C T HR Missense_Mutation p.D1021N 0.20 tolerated(0.36) benign(0) TCGA-CA-6717-01 8 21997735 21997735 A T REEP4 Silent p.V44V 0.11 TCGA-CA-6717-01 8 22210606 22210606 G T PIWIL2 Missense_Mutation p.K846N 0.11 deleterious(0.04) probably_damaging(0.962) TCGA-CA-6717-01 8 22332532 22332532 G T PPP3CC Missense_Mutation p.V39F 0.22 tolerated(0.3) benign(0.002) TCGA-CA-6717-01 8 22412065 22412065 G A SORBS3 Missense_Mutation p.D16N 0.18 deleterious_low_confidence(0.02) benign(0.165) TCGA-CA-6717-01 8 22473008 22473008 C A CCAR2 Missense_Mutation p.L426M 0.09 tolerated(0.11) probably_damaging(1) TCGA-CA-6717-01 8 22476164 22476164 A G CCAR2 Missense_Mutation p.N752S 0.08 tolerated(0.39) benign(0.001) TCGA-CA-6717-01 8 22570794 22570794 G T PEBP4 3'UTR 0.29 TCGA-CA-6717-01 8 23116577 23116577 A G CHMP7 Splice_Site p.X354_splice 0.13 TCGA-CA-6717-01 8 23539099 23539099 G A NKX3-1 Missense_Mutation p.P114S 0.12 tolerated(0.1) benign(0.028) TCGA-CA-6717-01 8 24167466 24167466 T C ADAM28 Silent p.L70L 0.09 TCGA-CA-6717-01 8 24178872 24178872 C T ADAM28 Intron 0.12 TCGA-CA-6717-01 8 24350089 24350089 G T ADAM7 Missense_Mutation p.R545I 0.12 tolerated(0.11) benign(0.007) TCGA-CA-6717-01 8 24350671 24350671 A C ADAM7 Missense_Mutation p.T591P 0.10 deleterious(0.01) probably_damaging(0.966) TCGA-CA-6717-01 8 24350693 24350693 C A ADAM7 Missense_Mutation p.S598Y 0.09 deleterious(0.01) benign(0.2) TCGA-CA-6717-01 8 24358378 24358378 G A ADAM7 Missense_Mutation p.R693Q 0.15 tolerated(1) benign(0) TCGA-CA-6717-01 8 24811801 24811801 C T CTD-2168K21.2 5'Flank 0.20 TCGA-CA-6717-01 8 25183012 25183012 G A DOCK5 Missense_Mutation p.D618N 0.19 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 8 25193798 25193798 G T DOCK5 Missense_Mutation p.D746Y 0.18 tolerated(0.07) possibly_damaging(0.781) TCGA-CA-6717-01 8 25341485 25341485 A G CDCA2 Missense_Mutation p.D375G 0.11 tolerated(0.8) benign(0.027) TCGA-CA-6717-01 8 25702032 25702032 G A EBF2 3'UTR 0.12 TCGA-CA-6717-01 8 26212049 26212049 A G PPP2R2A Silent p.P92P 0.08 TCGA-CA-6717-01 8 26218603 26218603 A C PPP2R2A Silent p.T201T 0.08 TCGA-CA-6717-01 8 26223885 26223885 T G PPP2R2A Missense_Mutation p.F353V 0.12 deleterious(0.01) benign(0.368) TCGA-CA-6717-01 8 26227835 26227835 A C PPP2R2A Missense_Mutation p.K427T 0.15 tolerated(0.18) benign(0.279) TCGA-CA-6717-01 8 26237089 26237089 C A BNIP3L 5'Flank 0.17 TCGA-CA-6717-01 8 26365124 26365124 A C PNMA2 3'UTR 0.27 TCGA-CA-6717-01 8 26365671 26365671 C A PNMA2 Nonsense_Mutation p.E201* 0.26 TCGA-CA-6717-01 8 26366121 26366121 G C PNMA2 Missense_Mutation p.L51V 0.17 tolerated(1) benign(0.007) TCGA-CA-6717-01 8 27327295 27327295 C T CHRNA2 Missense_Mutation p.A93T 0.24 tolerated(0.21) possibly_damaging(0.881) TCGA-CA-6717-01 8 27650200 27650200 G T ESCO2 Nonsense_Mutation p.E457* 0.13 TCGA-CA-6717-01 8 27680703 27680703 G T PBK Missense_Mutation p.H58N 0.14 tolerated(0.07) benign(0.088) TCGA-CA-6717-01 8 27779159 27779159 G A SCARA5 Missense_Mutation p.A282V 0.12 tolerated(0.25) benign(0.001) TCGA-CA-6717-01 8 27823934 27823934 C T SCARA5 Missense_Mutation p.A80T 0.12 tolerated(0.07) possibly_damaging(0.851) TCGA-CA-6717-01 8 27903178 27903178 C A NUGGC Splice_Site p.X438_splice 0.25 TCGA-CA-6717-01 8 27950730 27950730 A C ELP3 5'UTR 0.24 TCGA-CA-6717-01 8 2807762 2807762 T G CSMD1 Silent p.L3435L 0.26 TCGA-CA-6717-01 8 2820049 2820049 T G CSMD1 Silent p.G3189G 0.24 TCGA-CA-6717-01 8 28206690 28206690 T G ZNF395 Missense_Mutation p.K461T 0.10 tolerated(0.1) probably_damaging(0.946) TCGA-CA-6717-01 8 28385431 28385431 T C FZD3 Missense_Mutation p.V385A 0.08 tolerated(0.06) benign(0.228) TCGA-CA-6717-01 8 28902933 28902933 G A HMBOX1 Missense_Mutation p.A303T 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 8 28908733 28908733 C T HMBOX1 3'UTR 0.30 TCGA-CA-6717-01 8 28928004 28928004 C T KIF13B 3'UTR 0.16 TCGA-CA-6717-01 8 28984711 28984711 A G KIF13B Silent p.C1050C 0.14 TCGA-CA-6717-01 8 28988124 28988124 T C KIF13B Missense_Mutation p.N1001D 0.16 tolerated(0.28) benign(0.086) TCGA-CA-6717-01 8 29033627 29033627 T G KIF13B Missense_Mutation p.K301N 0.15 deleterious(0.01) possibly_damaging(0.839) TCGA-CA-6717-01 8 29043977 29043977 G T KIF13B Missense_Mutation p.S110Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 29202959 29202959 G A DUSP4 Intron 0.17 TCGA-CA-6717-01 8 2965247 2965247 G A CSMD1 Silent p.F2276F 0.20 TCGA-CA-6717-01 8 29990134 29990134 C A MBOAT4 Missense_Mutation p.Q211H 0.13 tolerated(0.56) benign(0.1) TCGA-CA-6717-01 8 3008997 3008997 T C CSMD1 Missense_Mutation p.I1985V 0.12 benign(0.045) TCGA-CA-6717-01 8 30404975 30404975 A C RBPMS 3'UTR 0.17 TCGA-CA-6717-01 8 30536997 30536997 T G GSR 3'UTR 0.24 TCGA-CA-6717-01 8 30643746 30643746 G T PPP2CB 3'UTR 0.17 TCGA-CA-6717-01 8 30694768 30694768 T A TEX15 Missense_Mutation p.N2628I 0.09 deleterious(0.01) possibly_damaging(0.878) TCGA-CA-6717-01 8 30695553 30695553 G A TEX15 Silent p.S2366S 0.12 TCGA-CA-6717-01 8 30700330 30700330 G T TEX15 Silent p.V2068V 0.21 TCGA-CA-6717-01 8 30702139 30702139 T C TEX15 Silent p.K1465K 0.10 TCGA-CA-6717-01 8 30704275 30704275 A C TEX15 Missense_Mutation p.F753L 0.16 tolerated(0.3) benign(0.002) TCGA-CA-6717-01 8 30704529 30704529 G T TEX15 Missense_Mutation p.L669I 0.12 tolerated(0.32) benign(0.278) TCGA-CA-6717-01 8 30704547 30704547 T C TEX15 Missense_Mutation p.I663V 0.11 tolerated(0.93) benign(0.003) TCGA-CA-6717-01 8 30704997 30704997 A C TEX15 Missense_Mutation p.F513V 0.16 tolerated(0.16) benign(0.013) TCGA-CA-6717-01 8 30705163 30705163 G T TEX15 Missense_Mutation p.F457L 0.10 tolerated(0.43) benign(0.306) TCGA-CA-6717-01 8 30705932 30705932 G A TEX15 Missense_Mutation p.S201L 0.14 tolerated(0.24) benign(0.01) TCGA-CA-6717-01 8 3072097 3072097 G T CSMD1 Missense_Mutation p.L1597I 0.10 benign(0.001) TCGA-CA-6717-01 8 3081329 3081329 T C CSMD1 Missense_Mutation p.Q1469R 0.12 benign(0.281) TCGA-CA-6717-01 8 30922577 30922577 A C WRN Missense_Mutation p.K168Q 0.10 deleterious(0.04) benign(0.357) TCGA-CA-6717-01 8 31012223 31012223 G A WRN Silent p.Q1257Q 0.08 TCGA-CA-6717-01 8 3205654 3205654 C A CSMD1 Nonsense_Mutation p.E1112* 0.19 TCGA-CA-6717-01 8 3216757 3216757 C T CSMD1 Missense_Mutation p.G1074E 0.15 probably_damaging(1) TCGA-CA-6717-01 8 32505898 32505898 A C NRG1 Intron 0.09 TCGA-CA-6717-01 8 32599553 32599553 A G NRG1 Intron 0.09 TCGA-CA-6717-01 8 32613952 32613952 C T NRG1 Missense_Mutation p.R284W 0.45 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 8 35647935 35647935 G A UNC5D Missense_Mutation p.E906K 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 3611481 3611481 C T CSMD1 Missense_Mutation p.R301Q 0.10 probably_damaging(0.96) TCGA-CA-6717-01 8 36698038 36698038 C A KCNU1 Missense_Mutation p.L526M 0.11 tolerated(0.4) possibly_damaging(0.553) TCGA-CA-6717-01 8 36703380 36703380 C A KCNU1 Missense_Mutation p.N618K 0.20 tolerated(1) benign(0) TCGA-CA-6717-01 8 36722015 36722015 C T KCNU1 Missense_Mutation p.S662L 0.15 tolerated(0.82) benign(0.001) TCGA-CA-6717-01 8 36766966 36766966 G T KCNU1 Silent p.L748L 0.09 TCGA-CA-6717-01 8 36776377 36776377 A C KCNU1 Missense_Mutation p.K853T 0.17 tolerated(0.24) benign(0.007) TCGA-CA-6717-01 8 36793260 36793260 C A KCNU1 Missense_Mutation p.S1091Y 0.15 tolerated_low_confidence(1) benign(0.002) TCGA-CA-6717-01 8 37607364 37607364 A C ERLIN2 Missense_Mutation p.E184A 0.12 deleterious(0.03) probably_damaging(0.995) TCGA-CA-6717-01 8 37730392 37730392 G T RAB11FIP1 Missense_Mutation p.P643Q 0.21 tolerated(1) benign(0.004) TCGA-CA-6717-01 8 37794250 37794250 A C GOT1L1 Missense_Mutation p.F251V 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 37794905 37794905 C A GOT1L1 Splice_Site p.X137_splice 0.17 TCGA-CA-6717-01 8 37823755 37823755 G A ADRB3 Missense_Mutation p.S78L 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 38067832 38067832 G T BAG4 Nonsense_Mutation p.E399* 0.11 TCGA-CA-6717-01 8 38109747 38109747 G T DDHD2 Missense_Mutation p.R520I 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-CA-6717-01 8 38187341 38187341 A G WHSC1L1 Missense_Mutation p.L379S 0.11 deleterious(0) probably_damaging(0.943) TCGA-CA-6717-01 8 38257836 38257836 A C LETM2 Missense_Mutation p.K184T 0.19 deleterious(0.01) possibly_damaging(0.469) TCGA-CA-6717-01 8 38264976 38264976 G A LETM2 Missense_Mutation p.E423K 0.17 tolerated_low_confidence(0.14) benign(0.01) TCGA-CA-6717-01 8 38271464 38271464 T G FGFR1 Missense_Mutation p.D786A 0.10 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 38283733 38283733 C T FGFR1 Missense_Mutation p.D249N 0.41 deleterious(0) possibly_damaging(0.678) TCGA-CA-6717-01 8 38832557 38832557 A G HTRA4 Silent p.R158R 0.10 TCGA-CA-6717-01 8 38851088 38851088 A G TM2D2 Missense_Mutation p.L136P 0.14 deleterious(0.05) benign(0.022) TCGA-CA-6717-01 8 39502936 39502936 A G ADAM18 Missense_Mutation p.D330G 0.21 deleterious(0.01) probably_damaging(0.964) TCGA-CA-6717-01 8 39534992 39534992 C A ADAM18 Missense_Mutation p.S523Y 0.17 tolerated(1) benign(0.257) TCGA-CA-6717-01 8 39607247 39607247 C A ADAM2 Missense_Mutation p.R605I 0.09 tolerated(0.08) benign(0.01) TCGA-CA-6717-01 8 39613286 39613286 C A ADAM2 Missense_Mutation p.K586N 0.24 tolerated(0.26) benign(0.012) TCGA-CA-6717-01 8 39678522 39678522 T G ADAM2 Missense_Mutation p.E171A 0.12 tolerated(0.12) benign(0.01) TCGA-CA-6717-01 8 39771411 39771411 C T IDO1 5'UTR 0.27 TCGA-CA-6717-01 8 39871214 39871214 C T IDO2 Missense_Mutation p.R297C 0.13 tolerated(0.29) benign(0.008) TCGA-CA-6717-01 8 40011686 40011686 G T C8orf4 3'UTR 0.09 TCGA-CA-6717-01 8 41467283 41467283 T G AGPAT6 Missense_Mutation p.I115M 0.08 deleterious(0.02) possibly_damaging(0.648) TCGA-CA-6717-01 8 41530010 41530010 G T ANK1 Missense_Mutation p.S1694Y 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-CA-6717-01 8 41530241 41530241 G T ANK1 Missense_Mutation p.S1617Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-CA-6717-01 8 41585423 41585423 T C ANK1 Intron 0.12 TCGA-CA-6717-01 8 41591506 41591506 G T ANK1 Missense_Mutation p.L104I 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 8 41834576 41834576 C T KAT6A Missense_Mutation p.R438Q 0.17 possibly_damaging(0.752) TCGA-CA-6717-01 8 42012143 42012143 C A AP3M2 5'UTR 0.37 TCGA-CA-6717-01 8 42026493 42026493 C T AP3M2 Missense_Mutation p.R391C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 42173825 42173825 T C IKBKB Missense_Mutation p.F300L 0.16 deleterious(0) benign(0.341) TCGA-CA-6717-01 8 42177369 42177369 G T IKBKB Intron 0.56 TCGA-CA-6717-01 8 42196126 42196126 C A POLB 5'UTR 0.10 TCGA-CA-6717-01 8 42231710 42231710 C T DKK4 Missense_Mutation p.D195N 0.12 tolerated(0.06) benign(0.232) TCGA-CA-6717-01 8 42294816 42294816 G A SLC20A2 Missense_Mutation p.A405V 0.14 tolerated(0.33) benign(0.004) TCGA-CA-6717-01 8 42585798 42585798 A C CHRNB3 Missense_Mutation p.K104T 0.17 deleterious(0) possibly_damaging(0.891) TCGA-CA-6717-01 8 42586826 42586826 G A CHRNB3 Missense_Mutation p.E126K 0.12 deleterious(0.02) probably_damaging(0.958) TCGA-CA-6717-01 8 42611500 42611500 G T CHRNA6 Missense_Mutation p.S281Y 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 42711334 42711334 G A RNF170 Nonsense_Mutation p.R249* 0.09 TCGA-CA-6717-01 8 42742906 42742906 G A RNF170 Silent p.F34F 0.26 TCGA-CA-6717-01 8 43171081 43171081 G T POTEA RNA 0.07 TCGA-CA-6717-01 8 48586428 48586428 C T SPIDR Missense_Mutation p.S537L 0.22 tolerated(0.9) benign(0) TCGA-CA-6717-01 8 48716035 48716035 A C PRKDC Missense_Mutation p.F3251V 0.16 probably_damaging(0.991) TCGA-CA-6717-01 8 48740850 48740850 T A PRKDC Missense_Mutation p.E2818V 0.18 probably_damaging(0.975) TCGA-CA-6717-01 8 48765276 48765276 T G PRKDC Missense_Mutation p.E2320D 0.11 probably_damaging(0.997) TCGA-CA-6717-01 8 48765346 48765346 C T PRKDC Splice_Site p.X2297_splice 0.14 TCGA-CA-6717-01 8 48830944 48830944 C T PRKDC Splice_Site p.X807_splice 0.10 TCGA-CA-6717-01 8 48846615 48846615 T G PRKDC Silent p.S511S 0.23 TCGA-CA-6717-01 8 48875323 48875323 G T MCM4 Splice_Site p.X168_splice 0.09 TCGA-CA-6717-01 8 49641680 49641680 G T EFCAB1 Missense_Mutation p.S166Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 49831390 49831390 T A SNAI2 Missense_Mutation p.E261D 0.10 tolerated(0.1) benign(0.042) TCGA-CA-6717-01 8 49832627 49832627 G A SNAI2 Silent p.C151C 0.22 TCGA-CA-6717-01 8 49986829 49986829 A C C8orf22 Missense_Mutation p.K57T 0.10 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 8 51314808 51314808 G T SNTG1 Missense_Mutation p.Q22H 0.11 tolerated(0.08) benign(0.004) TCGA-CA-6717-01 8 51449367 51449367 C T SNTG1 Missense_Mutation p.R227W 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 52232397 52232397 A C PXDNL 3'UTR 0.15 TCGA-CA-6717-01 8 52366291 52366291 C T PXDNL Missense_Mutation p.S346N 0.23 deleterious(0.03) benign(0.443) TCGA-CA-6717-01 8 52396263 52396263 T C PXDNL Missense_Mutation p.N155S 0.12 deleterious(0.01) probably_damaging(0.949) TCGA-CA-6717-01 8 52567295 52567295 C A PXDNL Nonsense_Mutation p.E64* 0.23 TCGA-CA-6717-01 8 52732990 52732990 T G PCMTD1 Missense_Mutation p.N332T 0.12 tolerated(0.12) possibly_damaging(0.562) TCGA-CA-6717-01 8 53062292 53062292 C T ST18 Silent p.E684E 0.06 TCGA-CA-6717-01 8 53062344 53062344 T C ST18 Missense_Mutation p.D667G 0.08 deleterious(0) possibly_damaging(0.7) TCGA-CA-6717-01 8 53062504 53062504 A G ST18 Silent p.L614L 0.08 TCGA-CA-6717-01 8 53570593 53570593 A C RB1CC1 Missense_Mutation p.S629A 0.12 deleterious(0.04) probably_damaging(0.986) TCGA-CA-6717-01 8 54141984 54141984 C T OPRK1 Missense_Mutation p.R339Q 0.20 tolerated(0.06) probably_damaging(0.997) TCGA-CA-6717-01 8 54727287 54727287 C A ATP6V1H Nonsense_Mutation p.E154* 0.20 TCGA-CA-6717-01 8 54745617 54745617 T C ATP6V1H Missense_Mutation p.E48G 0.11 deleterious(0.03) possibly_damaging(0.675) TCGA-CA-6717-01 8 54906286 54906286 C T TCEA1 Missense_Mutation p.E88K 0.24 tolerated(0.52) benign(0.001) TCGA-CA-6717-01 8 54974840 54974840 G A LYPLA1 Missense_Mutation p.S87F 0.15 deleterious(0.04) benign(0.354) TCGA-CA-6717-01 8 55047945 55047945 G T MRPL15 Missense_Mutation p.K34N 0.14 tolerated(0.29) benign(0.003) TCGA-CA-6717-01 8 55372417 55372417 C T SOX17 Silent p.F369F 0.17 TCGA-CA-6717-01 8 55538718 55538718 G T RP1 Missense_Mutation p.R759I 0.34 deleterious(0.02) benign(0.211) TCGA-CA-6717-01 8 55541147 55541147 A C RP1 Missense_Mutation p.T1569P 0.10 tolerated(0.34) benign(0.192) TCGA-CA-6717-01 8 55541837 55541837 G T RP1 Nonsense_Mutation p.E1799* 0.24 TCGA-CA-6717-01 8 55542905 55542905 G T RP1 Missense_Mutation p.D2155Y 0.16 deleterious(0) probably_damaging(0.919) TCGA-CA-6717-01 8 56015635 56015635 T C XKR4 Missense_Mutation p.V196A 0.21 tolerated(0.73) benign(0.001) TCGA-CA-6717-01 8 56270291 56270291 A G XKR4 Missense_Mutation p.D287G 0.19 tolerated(0.19) benign(0.007) TCGA-CA-6717-01 8 56708555 56708555 T G TGS1 Missense_Mutation p.N462K 0.20 tolerated(0.05) benign(0.169) TCGA-CA-6717-01 8 56882288 56882288 A G LYN Missense_Mutation p.D329G 0.13 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 8 56882307 56882307 A C LYN Missense_Mutation p.E335D 0.18 tolerated(0.18) benign(0.056) TCGA-CA-6717-01 8 57025882 57025882 G A MOS Silent p.F220F 0.20 TCGA-CA-6717-01 8 57079149 57079149 G A PLAG1 Missense_Mutation p.P386S 0.20 tolerated(0.47) benign(0.004) TCGA-CA-6717-01 8 57079649 57079649 G T PLAG1 Missense_Mutation p.A219E 0.19 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 8 57079913 57079913 T G PLAG1 Missense_Mutation p.N131T 0.18 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 8 57080761 57080761 C T PLAG1 Missense_Mutation p.R23H 0.13 tolerated(0.07) probably_damaging(0.964) TCGA-CA-6717-01 8 57228875 57228875 A C SDR16C5 Missense_Mutation p.L11R 0.13 deleterious(0.01) benign(0.348) TCGA-CA-6717-01 8 57354083 57354083 C T PENK Silent p.K184K 0.10 TCGA-CA-6717-01 8 57876412 57876412 T C IMPAD1 Silent p.R340R 0.20 TCGA-CA-6717-01 8 59060951 59060951 C A FAM110B 3'UTR 0.12 TCGA-CA-6717-01 8 59352218 59352218 T G UBXN2B Missense_Mutation p.L187R 0.23 tolerated(0.82) probably_damaging(0.933) TCGA-CA-6717-01 8 59409407 59409407 C G CYP7A1 Missense_Mutation p.G222R 0.14 tolerated(0.13) probably_damaging(1) TCGA-CA-6717-01 8 61504515 61504515 C T RAB2A Missense_Mutation p.S154F 0.25 tolerated(0.13) benign(0.006) TCGA-CA-6717-01 8 61749497 61749497 T G CHD7 Missense_Mutation p.L1371V 0.19 probably_damaging(0.996) TCGA-CA-6717-01 8 61750316 61750316 C T CHD7 Silent p.F1425F 0.12 TCGA-CA-6717-01 8 61754536 61754536 G A CHD7 Missense_Mutation p.R1592Q 0.22 probably_damaging(0.984) TCGA-CA-6717-01 8 61769037 61769037 C T CHD7 Missense_Mutation p.R2400W 0.19 probably_damaging(0.988) TCGA-CA-6717-01 8 61769211 61769211 T G CHD7 Missense_Mutation p.F2458V 0.16 benign(0.025) TCGA-CA-6717-01 8 62289222 62289222 G T CLVS1 Missense_Mutation p.D172Y 0.09 deleterious(0) probably_damaging(0.992) TCGA-CA-6717-01 8 62366812 62366812 T C CLVS1 Splice_Site p.X247_splice 0.23 TCGA-CA-6717-01 8 62577984 62577984 C A ASPH Intron 0.16 TCGA-CA-6717-01 8 62602256 62602256 C A ASPH Intron 0.26 TCGA-CA-6717-01 8 6357500 6357500 G T ANGPT2 3'UTR 0.18 TCGA-CA-6717-01 8 6360592 6360592 C T ANGPT2 3'UTR 0.16 TCGA-CA-6717-01 8 6385173 6385173 C T ANGPT2 Missense_Mutation p.E157K 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6717-01 8 63927971 63927971 C T GGH Missense_Mutation p.E293K 0.12 tolerated(0.69) benign(0.001) TCGA-CA-6717-01 8 64100269 64100269 A G YTHDF3 Missense_Mutation p.E566G 0.08 deleterious(0) possibly_damaging(0.607) TCGA-CA-6717-01 8 65495166 65495166 A T BHLHE22 3'UTR 0.09 TCGA-CA-6717-01 8 65495173 65495174 - A BHLHE22 3'UTR 0.17 TCGA-CA-6717-01 8 65495871 65495871 G T BHLHE22 3'UTR 0.22 TCGA-CA-6717-01 8 65528266 65528266 C T CYP7B1 Missense_Mutation p.E278K 0.19 tolerated(0.8) benign(0.061) TCGA-CA-6717-01 8 65528799 65528799 T A CYP7B1 Missense_Mutation p.Q100L 0.17 tolerated(0.48) benign(0.438) TCGA-CA-6717-01 8 66517682 66517682 C T ARMC1 Missense_Mutation p.R186Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 8 67012323 67012323 T G DNAJC5B 3'UTR 0.21 TCGA-CA-6717-01 8 67039529 67039529 C A TRIM55 Missense_Mutation p.S9Y 0.14 deleterious(0) benign(0.418) TCGA-CA-6717-01 8 67359517 67359517 C A ADHFE1 Missense_Mutation p.T190N 0.13 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 67509599 67509599 G T MYBL1 Missense_Mutation p.R160S 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 67511350 67511350 G A MYBL1 Nonsense_Mutation p.R76* 0.30 TCGA-CA-6717-01 8 67579002 67579002 A G VCPIP1 Silent p.G64G 0.12 TCGA-CA-6717-01 8 67793203 67793203 T G MCMDC2 Missense_Mutation p.S277A 0.16 tolerated(0.1) benign(0) TCGA-CA-6717-01 8 6793498 6793498 G A DEFA4 3'UTR 0.24 TCGA-CA-6717-01 8 68026091 68026091 G T CSPP1 Missense_Mutation p.E422D 0.19 deleterious(0) probably_damaging(0.91) TCGA-CA-6717-01 8 68030536 68030536 G A CSPP1 Missense_Mutation p.R512Q 0.10 tolerated(0.07) possibly_damaging(0.863) TCGA-CA-6717-01 8 68062040 68062040 A C CSPP1 Missense_Mutation p.R661S 0.21 deleterious(0) benign(0.287) TCGA-CA-6717-01 8 68112696 68112696 G A ARFGEF1 Nonsense_Mutation p.R1774* 0.20 TCGA-CA-6717-01 8 68184067 68184067 A C ARFGEF1 Missense_Mutation p.I481S 0.28 deleterious(0) probably_damaging(0.938) TCGA-CA-6717-01 8 68992692 68992692 G A PREX2 Missense_Mutation p.E553K 0.31 tolerated(0.05) possibly_damaging(0.615) TCGA-CA-6717-01 8 69011939 69011939 G T PREX2 Missense_Mutation p.S859I 0.07 deleterious(0) benign(0.125) TCGA-CA-6717-01 8 70476187 70476187 T C SULF1 5'UTR 0.12 TCGA-CA-6717-01 8 70585203 70585203 G A SLCO5A1 Silent p.C816C 0.17 TCGA-CA-6717-01 8 70585453 70585453 G A SLCO5A1 Missense_Mutation p.S733L 0.19 tolerated(0.06) benign(0.013) TCGA-CA-6717-01 8 70744643 70744643 G A SLCO5A1 Missense_Mutation p.S89L 0.30 tolerated_low_confidence(0.12) benign(0.004) TCGA-CA-6717-01 8 71069066 71069066 T G NCOA2 Missense_Mutation p.S512R 0.18 tolerated(0.06) benign(0.008) TCGA-CA-6717-01 8 71075742 71075742 G T NCOA2 Missense_Mutation p.L264I 0.11 tolerated(0.42) benign(0.013) TCGA-CA-6717-01 8 71553174 71553174 G T LACTB2 Nonsense_Mutation p.S235* 0.09 TCGA-CA-6717-01 8 72184070 72184070 G A EYA1 Nonsense_Mutation p.R297* 0.23 TCGA-CA-6717-01 8 72211322 72211322 T C EYA1 Silent p.P262P 0.09 TCGA-CA-6717-01 8 72755907 72755907 C T RP11-383H13.1 Missense_Mutation p.L91F 0.18 unknown(0) TCGA-CA-6717-01 8 72935244 72935244 G T TRPA1 Missense_Mutation p.S1086Y 0.15 tolerated(0.16) possibly_damaging(0.747) TCGA-CA-6717-01 8 72967920 72967920 C T TRPA1 Splice_Site p.X455_splice 0.07 TCGA-CA-6717-01 8 72973926 72973926 G A TRPA1 Missense_Mutation p.S293L 0.10 tolerated(0.08) possibly_damaging(0.461) TCGA-CA-6717-01 8 73850151 73850151 C T KCNB2 Missense_Mutation p.S854F 0.19 deleterious_low_confidence(0.03) benign(0.344) TCGA-CA-6717-01 8 73937103 73937103 T G TERF1 Missense_Mutation p.F224C 0.31 deleterious(0) possibly_damaging(0.893) TCGA-CA-6717-01 8 73937104 73937104 T C TERF1 Silent p.F224F 0.11 TCGA-CA-6717-01 8 74529631 74529631 C A STAU2 Nonsense_Mutation p.E156* 0.13 TCGA-CA-6717-01 8 74585420 74585420 G T STAU2 Missense_Mutation p.A111D 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6717-01 8 74941307 74941307 A C LY96 3'UTR 0.43 TCGA-CA-6717-01 8 75157194 75157194 G A JPH1 Missense_Mutation p.A492V 0.22 tolerated(0.21) benign(0.01) TCGA-CA-6717-01 8 75756241 75756241 C T PI15 Missense_Mutation p.S100L 0.12 deleterious(0.01) benign(0.017) TCGA-CA-6717-01 8 75757495 75757495 G A PI15 Silent p.Q175Q 0.11 TCGA-CA-6717-01 8 75924679 75924679 A C CRISPLD1 Silent p.V90V 0.10 TCGA-CA-6717-01 8 75926244 75926244 G T CRISPLD1 Missense_Mutation p.R178I 0.14 deleterious(0) possibly_damaging(0.77) TCGA-CA-6717-01 8 75926293 75926293 G A CRISPLD1 Silent p.Q194Q 0.13 TCGA-CA-6717-01 8 77617118 77617118 C T ZFHX4 Silent p.F265F 0.21 TCGA-CA-6717-01 8 77617966 77617966 T C ZFHX4 Missense_Mutation p.V548A 0.09 benign(0) TCGA-CA-6717-01 8 77763459 77763459 C T ZFHX4 Silent p.F1434F 0.24 TCGA-CA-6717-01 8 77763460 77763460 C T ZFHX4 Missense_Mutation p.R1435C 0.24 possibly_damaging(0.835) TCGA-CA-6717-01 8 77763917 77763917 A G ZFHX4 Missense_Mutation p.N1587S 0.13 benign(0) TCGA-CA-6717-01 8 77764141 77764141 G T ZFHX4 Missense_Mutation p.D1662Y 0.11 probably_damaging(0.934) TCGA-CA-6717-01 8 77768344 77768344 G T ZFHX4 Nonsense_Mutation p.E3063* 0.09 TCGA-CA-6717-01 8 77775616 77775616 C A ZFHX4 Silent p.I3222I 0.17 TCGA-CA-6717-01 8 77775769 77775769 T G ZFHX4 Nonsense_Mutation p.Y3273* 0.25 TCGA-CA-6717-01 8 77895955 77895955 A C PEX2 Missense_Mutation p.F154V 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 8 79513998 79513998 G A PKIA Missense_Mutation p.R58Q 0.26 tolerated(0.51) benign(0.001) TCGA-CA-6717-01 8 79646033 79646033 A C IL7 Missense_Mutation p.L150R 0.17 tolerated(0.83) probably_damaging(0.985) TCGA-CA-6717-01 8 80677927 80677927 A G HEY1 Silent p.Y141Y 0.12 TCGA-CA-6717-01 8 80677989 80677989 C T HEY1 Missense_Mutation p.A121T 0.24 deleterious(0.02) benign(0.338) TCGA-CA-6717-01 8 81431487 81431487 T G ZBTB10 Missense_Mutation p.C780W 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 81431737 81431737 G T ZBTB10 Nonsense_Mutation p.E864* 0.10 TCGA-CA-6717-01 8 81733784 81733784 T G ZNF704 Missense_Mutation p.K16Q 0.22 tolerated_low_confidence(0.52) benign(0.003) TCGA-CA-6717-01 8 81897178 81897178 G A PAG1 Missense_Mutation p.R237C 0.15 deleterious(0.03) benign(0.133) TCGA-CA-6717-01 8 82195686 82195686 A C FABP5 Missense_Mutation p.K55N 0.34 deleterious(0.02) possibly_damaging(0.483) TCGA-CA-6717-01 8 82371515 82371515 C A FABP9 Missense_Mutation p.S44I 0.10 deleterious(0.02) possibly_damaging(0.667) TCGA-CA-6717-01 8 82395372 82395372 G C FABP4 Missense_Mutation p.L11V 0.11 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 8 82598200 82598200 T C IMPA1 Splice_Site 0.12 TCGA-CA-6717-01 8 82607028 82607028 G T SLC10A5 Silent p.L60L 0.07 TCGA-CA-6717-01 8 8560124 8560124 C T CLDN23 Silent p.F72F 0.13 TCGA-CA-6717-01 8 86035672 86035672 C T LRRCC1 Missense_Mutation p.L319F 0.11 tolerated(0.74) benign(0.001) TCGA-CA-6717-01 8 86041567 86041567 A G LRRCC1 Missense_Mutation p.T527A 0.17 tolerated(0.83) benign(0.002) TCGA-CA-6717-01 8 86042268 86042268 C A LRRCC1 Missense_Mutation p.L581I 0.12 deleterious(0.05) benign(0.157) TCGA-CA-6717-01 8 86050409 86050410 - A LRRCC1 Frame_Shift_Ins p.E880Rfs*15 0.12 TCGA-CA-6717-01 8 86114416 86114416 G T E2F5 Missense_Mutation p.R90I 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 86121396 86121396 A C E2F5 Missense_Mutation p.K212T 0.14 deleterious(0) benign(0.358) TCGA-CA-6717-01 8 86126811 86126811 A C C8orf59 Nonsense_Mutation p.L94* 0.18 TCGA-CA-6717-01 8 86129662 86129662 A C C8orf59 Missense_Mutation p.F23V 0.15 tolerated(0.14) benign(0.384) TCGA-CA-6717-01 8 87442950 87442950 G T WWP1 Missense_Mutation p.D453Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 8 87479052 87479052 A C WWP1 Missense_Mutation p.K900T 0.13 deleterious(0.03) probably_damaging(1) TCGA-CA-6717-01 8 87588284 87588284 T C CNGB3 Silent p.K726K 0.26 TCGA-CA-6717-01 8 88885691 88885691 C A DCAF4L2 Missense_Mutation p.G170V 0.12 deleterious(0.03) benign(0.178) TCGA-CA-6717-01 8 89053710 89053710 G T MMP16 Silent p.R601R 0.13 TCGA-CA-6717-01 8 89053946 89053946 T G MMP16 Silent p.R523R 0.10 TCGA-CA-6717-01 8 89131078 89131078 A C MMP16 Missense_Mutation p.F241C 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 89198760 89198760 G A MMP16 Nonsense_Mutation p.R117* 0.17 TCGA-CA-6717-01 8 90936982 90936982 C A OSGIN2 Missense_Mutation p.S291Y 0.12 deleterious(0.01) possibly_damaging(0.822) TCGA-CA-6717-01 8 90947759 90947759 A C NBN 3'UTR 0.11 TCGA-CA-6717-01 8 90976667 90976667 T C NBN Missense_Mutation p.Y322C 0.19 deleterious(0.03) probably_damaging(0.992) TCGA-CA-6717-01 8 90994993 90994993 C T NBN Missense_Mutation p.R43Q 0.10 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 8 91057114 91057114 A C DECR1 Missense_Mutation p.E259A 0.12 tolerated(0.07) benign(0.008) TCGA-CA-6717-01 8 91075380 91075380 C T CALB1 Missense_Mutation p.G183E 0.13 deleterious(0.02) benign(0.426) TCGA-CA-6717-01 8 91893266 91893266 T G NECAB1 Missense_Mutation p.F89V 0.10 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 8 92090721 92090721 G T OTUD6B Missense_Mutation p.Q181H 0.12 tolerated(0.08) benign(0.069) TCGA-CA-6717-01 8 92301363 92301363 G T SLC26A7 Splice_Site p.X65_splice 0.09 TCGA-CA-6717-01 8 92378872 92378872 A C SLC26A7 Missense_Mutation p.K518T 0.22 tolerated(0.23) probably_damaging(0.999) TCGA-CA-6717-01 8 92406080 92406080 G T SLC26A7 Splice_Site p.X611_splice 0.09 TCGA-CA-6717-01 8 92406210 92406210 G T SLC26A7 Missense_Mutation p.E626D 0.09 tolerated(0.5) benign(0.023) TCGA-CA-6717-01 8 92988144 92988144 C A RUNX1T1 Missense_Mutation p.W457L 0.11 tolerated(0.12) benign(0.41) TCGA-CA-6717-01 8 93017369 93017369 T C RUNX1T1 Missense_Mutation p.N250D 0.20 deleterious(0.01) possibly_damaging(0.52) TCGA-CA-6717-01 8 93088366 93088366 C A RUNX1T1 Intron 0.20 TCGA-CA-6717-01 8 94740445 94740445 C T FAM92A1 Nonsense_Mutation p.R264* 0.14 TCGA-CA-6717-01 8 94746683 94746683 C T RBM12B Silent p.R652R 0.12 TCGA-CA-6717-01 8 94807729 94807729 C A TMEM67 Missense_Mutation p.F589L 0.09 tolerated(0.05) benign(0.199) TCGA-CA-6717-01 8 94821074 94821074 T G TMEM67 Missense_Mutation p.L816V 0.09 deleterious(0.01) possibly_damaging(0.684) TCGA-CA-6717-01 8 94821177 94821177 T G TMEM67 Missense_Mutation p.L850R 0.15 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 8 94936044 94936044 A C PDP1 3'UTR 0.12 TCGA-CA-6717-01 8 94937522 94937522 T G PDP1 3'UTR 0.19 TCGA-CA-6717-01 8 95264365 95264365 G A GEM Silent p.F165F 0.15 TCGA-CA-6717-01 8 95538964 95538964 G T KIAA1429 Missense_Mutation p.A503D 0.09 deleterious(0.02) possibly_damaging(0.587) TCGA-CA-6717-01 8 95777987 95777987 A C DPY19L4 Missense_Mutation p.N351H 0.10 tolerated(1) benign(0.002) TCGA-CA-6717-01 8 95796020 95796020 G T DPY19L4 Missense_Mutation p.R613I 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 8 95837220 95837220 G T INTS8 Missense_Mutation p.R77I 0.20 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 8 9588468 9588468 C T TNKS Silent p.F690F 0.09 TCGA-CA-6717-01 8 9590845 9590845 T G TNKS Missense_Mutation p.L735R 0.10 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 8 96167893 96167893 C A PLEKHF2 3'UTR 0.10 TCGA-CA-6717-01 8 96168385 96168385 T G PLEKHF2 3'UTR 0.12 TCGA-CA-6717-01 8 97299302 97299302 C T PTDSS1 Silent p.F123F 0.24 TCGA-CA-6717-01 8 97345835 97345835 C A PTDSS1 3'UTR 0.30 TCGA-CA-6717-01 8 97506525 97506525 C G SDC2 Missense_Mutation p.T9S 0.25 tolerated(0.32) benign(0.005) TCGA-CA-6717-01 8 97797428 97797428 G T CPQ Missense_Mutation p.E101D 0.19 tolerated(0.49) benign(0.001) TCGA-CA-6717-01 8 98289707 98289707 G A TSPYL5 Silent p.F122F 0.22 TCGA-CA-6717-01 8 98701272 98701272 C A MTDH Missense_Mutation p.S251Y 0.10 tolerated(0.08) probably_damaging(0.977) TCGA-CA-6717-01 8 98731314 98731314 T G MTDH Missense_Mutation p.L473R 0.21 tolerated(0.07) benign(0.265) TCGA-CA-6717-01 8 98735234 98735234 C T MTDH Missense_Mutation p.T550I 0.12 tolerated(0.61) benign(0.001) TCGA-CA-6717-01 8 99039708 99039708 G T MATN2 Missense_Mutation p.E669D 0.10 tolerated(0.7) benign(0.006) TCGA-CA-6717-01 8 99053964 99053964 A C RPL30 3'UTR 0.41 TCGA-CA-6717-01 8 99264806 99264806 A G NIPAL2 Silent p.S87S 0.09 TCGA-CA-6717-01 8 99440676 99440676 G A KCNS2 Missense_Mutation p.D157N 0.14 deleterious(0.03) probably_damaging(0.985) TCGA-CA-6717-01 8 99961562 99961562 G T OSR2 Nonsense_Mutation p.E128* 0.12 TCGA-CA-6717-01 9 100070007 100070007 C T CCDC180 Intron 0.17 TCGA-CA-6717-01 9 100139115 100139115 C T CCDC180 Missense_Mutation p.A1682V 0.25 tolerated(0.14) possibly_damaging(0.682) TCGA-CA-6717-01 9 100222978 100222978 G T TDRD7 Missense_Mutation p.M458I 0.24 tolerated(0.66) benign(0) TCGA-CA-6717-01 9 100315589 100315589 C T TMOD1 Missense_Mutation p.P102S 0.09 tolerated(0.09) benign(0.272) TCGA-CA-6717-01 9 100326358 100326358 G A TMOD1 Missense_Mutation p.E176K 0.18 deleterious(0) benign(0.172) TCGA-CA-6717-01 9 100418018 100418018 T G NCBP1 Missense_Mutation p.F424V 0.18 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 9 100447241 100447241 T G XPA Missense_Mutation p.K213Q 0.08 tolerated(0.38) benign(0.184) TCGA-CA-6717-01 9 100618719 100618719 C A FOXE1 3'UTR 0.10 TCGA-CA-6717-01 9 100689752 100689752 C A HEMGN Nonsense_Mutation p.E457* 0.08 TCGA-CA-6717-01 9 100700436 100700436 C A HEMGN 5'UTR 0.19 TCGA-CA-6717-01 9 100890978 100890978 C T CORO2A Missense_Mutation p.D331N 0.15 tolerated(0.16) benign(0.05) TCGA-CA-6717-01 9 100961833 100961833 A G TBC1D2 Missense_Mutation p.F862L 0.18 deleterious(0.03) possibly_damaging(0.86) TCGA-CA-6717-01 9 101017503 101017503 C A TBC1D2 Missense_Mutation p.E107D 0.12 tolerated(0.28) benign(0.014) TCGA-CA-6717-01 9 101151234 101151234 G T GABBR2 Silent p.I477I 0.10 TCGA-CA-6717-01 9 101895004 101895004 C T TGFBR1 Missense_Mutation p.T186M 0.10 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 9 101900288 101900288 C T TGFBR1 Missense_Mutation p.S241L 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 9 101904885 101904885 C A TGFBR1 Nonsense_Mutation p.Y291* 0.18 TCGA-CA-6717-01 9 102595883 102595883 A T NR4A3 Intron 0.33 TCGA-CA-6717-01 9 102677633 102677633 A C STX17 Missense_Mutation p.N38H 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 9 103054919 103054919 C T INVS Missense_Mutation p.R794C 0.15 deleterious_low_confidence(0.02) benign(0.021) TCGA-CA-6717-01 9 103060240 103060240 A G INVS Missense_Mutation p.I1013M 0.08 tolerated_low_confidence(0.07) benign(0.08) TCGA-CA-6717-01 9 103060272 103060272 C A INVS Missense_Mutation p.S1024Y 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.594) TCGA-CA-6717-01 9 103108537 103108537 T G TEX10 Missense_Mutation p.K318N 0.23 deleterious(0.01) possibly_damaging(0.76) TCGA-CA-6717-01 9 103278961 103278961 G T TMEFF1 Missense_Mutation p.E156D 0.14 tolerated(0.91) benign(0.142) TCGA-CA-6717-01 9 103340830 103340830 C T MURC Silent p.F135F 0.14 TCGA-CA-6717-01 9 104071632 104071632 T C LPPR1 Silent p.F175F 0.10 TCGA-CA-6717-01 9 104152741 104152741 G A MRPL50 3'UTR 0.18 TCGA-CA-6717-01 9 104170267 104170267 A C ZNF189 Missense_Mutation p.I73L 0.18 tolerated(1) benign(0) TCGA-CA-6717-01 9 104171225 104171225 G T ZNF189 Missense_Mutation p.R392I 0.17 deleterious(0.04) probably_damaging(0.987) TCGA-CA-6717-01 9 104171439 104171439 A C ZNF189 Missense_Mutation p.K463N 0.17 deleterious(0.01) probably_damaging(0.916) TCGA-CA-6717-01 9 104448994 104448994 G A GRIN3A Silent p.V396V 0.18 TCGA-CA-6717-01 9 104449439 104449439 G T GRIN3A Missense_Mutation p.S248Y 0.17 tolerated(0.13) possibly_damaging(0.59) TCGA-CA-6717-01 9 105757667 105757667 C T CYLC2 Missense_Mutation p.S2F 0.13 deleterious(0) probably_damaging(0.987) TCGA-CA-6717-01 9 105763874 105763874 T G CYLC2 Missense_Mutation p.F11C 0.20 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 9 105767460 105767460 G T CYLC2 Nonsense_Mutation p.G183* 0.10 TCGA-CA-6717-01 9 105767559 105767559 G T CYLC2 Missense_Mutation p.D216Y 0.18 tolerated(0.06) unknown(0) TCGA-CA-6717-01 9 105767828 105767828 G T CYLC2 Missense_Mutation p.K305N 0.08 deleterious(0.04) unknown(0) TCGA-CA-6717-01 9 106873880 106873880 G A SMC2 Missense_Mutation p.A347T 0.18 tolerated(0.31) benign(0.024) TCGA-CA-6717-01 9 107266542 107266542 A C OR13F1 5'UTR 0.13 TCGA-CA-6717-01 9 107331466 107331466 T C OR13C8 Silent p.D6D 0.16 TCGA-CA-6717-01 9 107332107 107332107 T G OR13C8 Missense_Mutation p.F220C 0.08 deleterious(0.03) benign(0.29) TCGA-CA-6717-01 9 107379553 107379553 C T OR13C9 Silent p.P311P 0.12 TCGA-CA-6717-01 9 107380213 107380213 G C OR13C9 Silent p.T91T 0.09 TCGA-CA-6717-01 9 107380256 107380256 G T OR13C9 Missense_Mutation p.S77Y 0.05 tolerated(0.05) possibly_damaging(0.548) TCGA-CA-6717-01 9 107456985 107456985 C A OR13D1 Missense_Mutation p.L95I 0.24 deleterious(0.01) possibly_damaging(0.844) TCGA-CA-6717-01 9 107521699 107521699 T C NIPSNAP3A 3'UTR 0.13 TCGA-CA-6717-01 9 107560759 107560759 C A ABCA1 Missense_Mutation p.Q1688H 0.08 deleterious(0.01) possibly_damaging(0.739) TCGA-CA-6717-01 9 107564343 107564343 G T ABCA1 Missense_Mutation p.L1564M 0.06 tolerated(0.14) possibly_damaging(0.824) TCGA-CA-6717-01 9 107624068 107624068 T G ABCA1 Missense_Mutation p.Q145H 0.10 deleterious(0.03) benign(0.133) TCGA-CA-6717-01 9 108128681 108128681 C A SLC44A1 Missense_Mutation p.L489I 0.10 deleterious(0.01) possibly_damaging(0.623) TCGA-CA-6717-01 9 109687191 109687191 C A ZNF462 Missense_Mutation p.S333Y 0.09 possibly_damaging(0.608) TCGA-CA-6717-01 9 109689356 109689356 G A ZNF462 Missense_Mutation p.E1055K 0.08 possibly_damaging(0.647) TCGA-CA-6717-01 9 110091949 110091949 T G RAD23B 3'UTR 0.19 TCGA-CA-6717-01 9 110250290 110250290 A G KLF4 Missense_Mutation p.S129P 0.19 tolerated(0.14) probably_damaging(0.959) TCGA-CA-6717-01 9 111660854 111660854 A G IKBKAP Missense_Mutation p.L764P 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 111936734 111936734 G A EPB41L4B 3'UTR 0.18 TCGA-CA-6717-01 9 113100078 113100078 A C TXNDC8 5'UTR 0.10 TCGA-CA-6717-01 9 113169527 113169527 A C SVEP1 Missense_Mutation p.S2785A 0.11 benign(0.042) TCGA-CA-6717-01 9 113169580 113169580 G A SVEP1 Missense_Mutation p.S2767F 0.22 possibly_damaging(0.673) TCGA-CA-6717-01 9 113170353 113170353 G T SVEP1 Missense_Mutation p.F2509L 0.12 benign(0.007) TCGA-CA-6717-01 9 113197576 113197576 G T SVEP1 Missense_Mutation p.F1611L 0.24 probably_damaging(0.963) TCGA-CA-6717-01 9 113241947 113241947 A C SVEP1 Missense_Mutation p.S819A 0.17 benign(0.013) TCGA-CA-6717-01 9 113538934 113538934 A G MUSK Silent p.K461K 0.15 TCGA-CA-6717-01 9 113563219 113563219 G A MUSK Missense_Mutation p.R854Q 0.20 tolerated(0.17) probably_damaging(0.992) TCGA-CA-6717-01 9 114132818 114132818 T G KIAA0368 Missense_Mutation p.K1802T 0.09 tolerated(0.52) benign(0.017) TCGA-CA-6717-01 9 114187708 114187708 T G KIAA0368 Missense_Mutation p.E580A 0.10 deleterious(0.01) possibly_damaging(0.493) TCGA-CA-6717-01 9 114204675 114204675 G A KIAA0368 Silent p.G278G 0.16 TCGA-CA-6717-01 9 114305427 114305427 C T ZNF483 Missense_Mutation p.R738W 0.26 deleterious(0) possibly_damaging(0.689) TCGA-CA-6717-01 9 114412025 114412025 T C DNAJC25 Missense_Mutation p.V261A 0.19 tolerated(0.52) benign(0.001) TCGA-CA-6717-01 9 114476797 114476797 A C C9orf84 Silent p.P717P 0.10 TCGA-CA-6717-01 9 114484734 114484734 G A C9orf84 Missense_Mutation p.L632F 0.12 tolerated(1) benign(0.008) TCGA-CA-6717-01 9 114484836 114484836 C T C9orf84 Missense_Mutation p.E598K 0.18 deleterious(0.03) probably_damaging(0.943) TCGA-CA-6717-01 9 114659574 114659574 T G UGCG Missense_Mutation p.F27V 0.11 tolerated(0.31) benign(0.001) TCGA-CA-6717-01 9 115336996 115336996 C A KIAA1958 Nonsense_Mutation p.Y212* 0.14 TCGA-CA-6717-01 9 115456425 115456425 A C INIP Missense_Mutation p.N38K 0.30 deleterious(0.03) benign(0.005) TCGA-CA-6717-01 9 115600903 115600903 G A SNX30 Missense_Mutation p.E314K 0.13 tolerated(0.52) benign(0.304) TCGA-CA-6717-01 9 115626539 115626539 G A SNX30 Missense_Mutation p.V372I 0.08 tolerated(0.46) probably_damaging(0.996) TCGA-CA-6717-01 9 115760090 115760090 C A ZNF883 RNA 0.19 TCGA-CA-6717-01 9 115805372 115805372 C A ZFP37 Missense_Mutation p.R509I 0.09 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 9 115805944 115805944 C A ZFP37 Missense_Mutation p.E318D 0.24 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 9 115932895 115932895 C A FKBP15 Missense_Mutation p.M891I 0.21 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 9 116094253 116094253 G A WDR31 Missense_Mutation p.S17L 0.17 tolerated_low_confidence(0.73) benign(0) TCGA-CA-6717-01 9 116999288 116999288 G A COL27A1 Missense_Mutation p.G883S 0.15 unknown(0) TCGA-CA-6717-01 9 117071735 117071735 G A COL27A1 Missense_Mutation p.E1805K 0.17 unknown(0) TCGA-CA-6717-01 9 117085432 117085432 C A ORM1 Missense_Mutation p.L7I 0.07 deleterious(0.01) unknown(0) TCGA-CA-6717-01 9 117139226 117139226 G T AKNA Missense_Mutation p.F287L 0.23 tolerated(1) benign(0.001) TCGA-CA-6717-01 9 117188546 117188546 C T DFNB31 Missense_Mutation p.E371K 0.12 tolerated(0.07) benign(0.026) TCGA-CA-6717-01 9 117668138 117668138 G T TNFSF8 Missense_Mutation p.P94T 0.09 tolerated(0.05) benign(0.322) TCGA-CA-6717-01 9 117827000 117827000 G A TNC Missense_Mutation p.T1138M 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-CA-6717-01 9 118997515 118997515 G A PAPPA Silent p.E777E 0.09 TCGA-CA-6717-01 9 119033626 119033626 G A PAPPA Missense_Mutation p.D962N 0.14 deleterious(0) possibly_damaging(0.555) TCGA-CA-6717-01 9 119461295 119461295 A C TRIM32 Missense_Mutation p.D425A 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6717-01 9 119463533 119463533 G A TRIM32 3'UTR 0.14 TCGA-CA-6717-01 9 121929543 121929543 C T BRINP1 Missense_Mutation p.R702Q 0.09 deleterious(0) possibly_damaging(0.885) TCGA-CA-6717-01 9 121929881 121929881 C T BRINP1 Silent p.K589K 0.22 TCGA-CA-6717-01 9 121930256 121930256 C A BRINP1 Missense_Mutation p.Q464H 0.18 deleterious(0.05) probably_damaging(0.948) TCGA-CA-6717-01 9 123156876 123156876 T G CDK5RAP2 Missense_Mutation p.K1831T 0.10 deleterious(0.01) probably_damaging(0.932) TCGA-CA-6717-01 9 123177407 123177407 C T CDK5RAP2 Missense_Mutation p.R1403Q 0.09 deleterious(0) possibly_damaging(0.885) TCGA-CA-6717-01 9 123201748 123201748 C A CDK5RAP2 Missense_Mutation p.Q1217H 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-CA-6717-01 9 123367617 123367617 C T MEGF9 Missense_Mutation p.E554K 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 9 123527004 123527004 G A FBXW2 Missense_Mutation p.R400C 0.22 deleterious(0.02) benign(0.446) TCGA-CA-6717-01 9 123636908 123636908 A G PHF19 Missense_Mutation p.S38P 0.24 tolerated(0.12) benign(0.188) TCGA-CA-6717-01 9 123675939 123675939 T C TRAF1 Silent p.K124K 0.11 TCGA-CA-6717-01 9 123753483 123753483 A C C5 Missense_Mutation p.I976S 0.08 tolerated(0.29) benign(0.027) TCGA-CA-6717-01 9 123787783 123787783 C A C5 Missense_Mutation p.D317Y 0.09 deleterious(0) possibly_damaging(0.781) TCGA-CA-6717-01 9 123904502 123904502 A G CNTRL Missense_Mutation p.E942G 0.17 possibly_damaging(0.78) TCGA-CA-6717-01 9 123928412 123928412 A G CNTRL Missense_Mutation p.Q1870R 0.09 benign(0.005) TCGA-CA-6717-01 9 124044211 124044211 C A GSN-AS1 RNA 0.22 TCGA-CA-6717-01 9 124929081 124929081 G A MORN5 Missense_Mutation p.E28K 0.16 tolerated(0.33) benign(0.014) TCGA-CA-6717-01 9 124979386 124979386 C T LHX6 Missense_Mutation p.D215N 0.18 tolerated(0.05) probably_damaging(0.997) TCGA-CA-6717-01 9 125042842 125042842 A C MRRF Missense_Mutation p.N102T 0.30 deleterious(0) possibly_damaging(0.665) TCGA-CA-6717-01 9 125281960 125281960 C T OR1J4 Missense_Mutation p.L181F 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.529) TCGA-CA-6717-01 9 125315899 125315899 A G OR1N2 Missense_Mutation p.T151A 0.08 tolerated(0.12) benign(0.138) TCGA-CA-6717-01 9 125330051 125330051 G A OR1L8 Missense_Mutation p.R236C 0.12 tolerated(0.24) benign(0.014) TCGA-CA-6717-01 9 125330333 125330333 A C OR1L8 Missense_Mutation p.C142G 0.13 deleterious(0) probably_damaging(0.933) TCGA-CA-6717-01 9 125330585 125330585 T C OR1L8 Missense_Mutation p.T58A 0.22 deleterious(0.03) benign(0.018) TCGA-CA-6717-01 9 125424272 125424272 C A OR1L1 Missense_Mutation p.S93Y 0.14 deleterious(0.01) possibly_damaging(0.459) TCGA-CA-6717-01 9 125551281 125551281 C T OR5C1 Missense_Mutation p.R24C 0.31 tolerated(0.06) possibly_damaging(0.87) TCGA-CA-6717-01 9 125589047 125589047 T C PDCL Missense_Mutation p.K7R 0.13 tolerated(0.14) benign(0.183) TCGA-CA-6717-01 9 125946519 125946519 C T STRBP 5'UTR 0.20 TCGA-CA-6717-01 9 126136875 126136875 A C CRB2 Missense_Mutation p.K1136T 0.11 tolerated(0.17) benign(0.255) TCGA-CA-6717-01 9 126144827 126144827 G T DENND1A Silent p.L638L 0.19 TCGA-CA-6717-01 9 127265433 127265433 T G NR5A1 Missense_Mutation p.I57L 0.10 deleterious(0.01) possibly_damaging(0.837) TCGA-CA-6717-01 9 127572538 127572538 C T OLFML2A Silent p.F602F 0.25 TCGA-CA-6717-01 9 127637392 127637392 G T ARPC5L Nonsense_Mutation p.E121* 0.12 TCGA-CA-6717-01 9 127915888 127915888 T G PPP6C Missense_Mutation p.D235A 0.26 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 127998990 127998990 A G HSPA5 Missense_Mutation p.F616L 0.13 tolerated_low_confidence(0.32) benign(0.006) TCGA-CA-6717-01 9 128697765 128697765 A G PBX3 Missense_Mutation p.N241S 0.12 deleterious(0.03) probably_damaging(0.968) TCGA-CA-6717-01 9 129246302 129246302 C T MVB12B Silent p.I288I 0.14 TCGA-CA-6717-01 9 129453251 129453251 G A LMX1B Missense_Mutation p.E155K 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 9 129455811 129455811 G A LMX1B Silent p.E250E 0.32 TCGA-CA-6717-01 9 129596722 129596722 C A ZBTB43 3'UTR 0.16 TCGA-CA-6717-01 9 129598392 129598392 T G ZBTB43 3'UTR 0.13 TCGA-CA-6717-01 9 129643116 129643116 G T ZBTB34 Nonsense_Mutation p.E476* 0.20 TCGA-CA-6717-01 9 129644965 129644965 C T ZBTB34 3'UTR 0.25 TCGA-CA-6717-01 9 129646399 129646399 T G ZBTB34 3'UTR 0.30 TCGA-CA-6717-01 9 129831515 129831515 A G RALGPS1 Missense_Mutation p.N164D 0.16 deleterious(0) benign(0.334) TCGA-CA-6717-01 9 129928449 129928449 C T RALGPS1 Nonsense_Mutation p.R238* 0.23 TCGA-CA-6717-01 9 130270170 130270170 T C FAM129B Missense_Mutation p.T544A 0.08 tolerated(0.09) benign(0.193) TCGA-CA-6717-01 9 130438143 130438143 G A STXBP1 Missense_Mutation p.V391I 0.11 tolerated(0.1) benign(0.092) TCGA-CA-6717-01 9 130494367 130494367 G T TOR2A Silent p.L304L 0.25 TCGA-CA-6717-01 9 130941028 130941028 G A CIZ1 Silent p.C486C 0.09 TCGA-CA-6717-01 9 131010211 131010211 G T DNM1 Missense_Mutation p.E634D 0.15 tolerated(0.48) benign(0.001) TCGA-CA-6717-01 9 131019453 131019453 G A GOLGA2 Missense_Mutation p.R968C 0.08 tolerated(0.07) benign(0.03) TCGA-CA-6717-01 9 13106887 13106887 A G MPDZ 3'UTR 0.18 TCGA-CA-6717-01 9 131071917 131071917 T C TRUB2 Missense_Mutation p.D303G 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-CA-6717-01 9 131112646 131112646 C T SLC27A4 Silent p.I257I 0.18 TCGA-CA-6717-01 9 131186485 131186485 A G CERCAM Silent p.P165P 0.14 TCGA-CA-6717-01 9 13122112 13122112 G T MPDZ Missense_Mutation p.L1671I 0.10 deleterious(0) probably_damaging(0.923) TCGA-CA-6717-01 9 131286028 131286028 A G GLE1 Missense_Mutation p.Q267R 0.10 tolerated(0.74) benign(0.002) TCGA-CA-6717-01 9 131295823 131295823 C T GLE1 Silent p.I448I 0.10 TCGA-CA-6717-01 9 131344828 131344828 G A SPTAN1 Missense_Mutation p.R548Q 0.11 tolerated(0.07) possibly_damaging(0.877) TCGA-CA-6717-01 9 131355270 131355270 T C SPTAN1 Missense_Mutation p.I1055T 0.25 tolerated(0.37) benign(0.046) TCGA-CA-6717-01 9 13138001 13138001 A C MPDZ Silent p.A1385A 0.21 TCGA-CA-6717-01 9 131708712 131708712 G T DOLK Missense_Mutation p.L291I 0.29 tolerated(0.23) benign(0.212) TCGA-CA-6717-01 9 131715087 131715087 G A RP11-101E3.5 Silent p.R62R 0.08 TCGA-CA-6717-01 9 13205073 13205073 G A MPDZ Missense_Mutation p.S503L 0.32 tolerated(0.72) benign(0) TCGA-CA-6717-01 9 132571663 132571663 A C TOR1B Missense_Mutation p.D271A 0.13 deleterious(0) probably_damaging(0.978) TCGA-CA-6717-01 9 132658259 132658259 C T FNBP1 Silent p.T568T 0.18 TCGA-CA-6717-01 9 132861735 132861735 G T GPR107 Splice_Site p.X288_splice 0.12 TCGA-CA-6717-01 9 133261840 133261840 A C HMCN2 Missense_Mutation p.K139T 0.30 tolerated(0.15) benign(0.024) TCGA-CA-6717-01 9 133540104 133540104 C T PRDM12 Silent p.L22L 0.20 TCGA-CA-6717-01 9 133755465 133755465 G A ABL1 Nonsense_Mutation p.W497* 0.11 TCGA-CA-6717-01 9 133952683 133952683 G A LAMC3 Missense_Mutation p.A1247T 0.24 tolerated(0.26) benign(0.176) TCGA-CA-6717-01 9 134010323 134010323 T C NUP214 Silent p.F290F 0.15 TCGA-CA-6717-01 9 134106047 134106047 C T NUP214 Silent p.F2035F 0.12 TCGA-CA-6717-01 9 134151535 134151535 G T FAM78A Missense_Mutation p.S11Y 0.20 tolerated_low_confidence(0.76) benign(0.01) TCGA-CA-6717-01 9 134305501 134305501 A C PRRC2B 5'UTR 0.13 TCGA-CA-6717-01 9 134351752 134351752 G A PRRC2B Silent p.E1412E 0.19 TCGA-CA-6717-01 9 134386736 134386736 C T POMT1 Missense_Mutation p.R312W 0.28 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 135176115 135176115 C A SETX Missense_Mutation p.R1817I 0.18 deleterious(0) possibly_damaging(0.541) TCGA-CA-6717-01 9 135176137 135176137 A G SETX Silent p.L1810L 0.08 TCGA-CA-6717-01 9 135202557 135202557 C A SETX Missense_Mutation p.E1476D 0.12 tolerated(0.28) benign(0.027) TCGA-CA-6717-01 9 135203129 135203129 T G SETX Missense_Mutation p.K1286Q 0.24 deleterious(0) possibly_damaging(0.764) TCGA-CA-6717-01 9 135204183 135204183 A T SETX Silent p.I934I 0.14 TCGA-CA-6717-01 9 135204302 135204302 C A SETX Nonsense_Mutation p.E895* 0.26 TCGA-CA-6717-01 9 135206471 135206471 C T SETX Missense_Mutation p.V356I 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6717-01 9 135266210 135266210 G A TTF1 Missense_Mutation p.R666C 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6717-01 9 135470494 135470494 T G DDX31 Missense_Mutation p.D772A 0.12 tolerated(0.2) benign(0.002) TCGA-CA-6717-01 9 135772605 135772605 C A TSC1 Nonsense_Mutation p.E981* 0.25 TCGA-CA-6717-01 9 135772663 135772663 C T TSC1 Silent p.E961E 0.17 TCGA-CA-6717-01 9 135906320 135906320 C A GTF3C5 5'Flank 0.10 TCGA-CA-6717-01 9 136215857 136215857 G T RPL7A Silent p.V28V 0.14 TCGA-CA-6717-01 9 136215884 136215884 G A RPL7A Silent p.K37K 0.17 TCGA-CA-6717-01 9 136259456 136259456 A C C9orf96 Missense_Mutation p.N208H 0.12 tolerated(0.1) benign(0.063) TCGA-CA-6717-01 9 136273921 136273921 T C REXO4 Missense_Mutation p.K349E 0.10 deleterious(0) probably_damaging(0.95) TCGA-CA-6717-01 9 136594899 136594899 G A SARDH Silent p.I301I 0.13 TCGA-CA-6717-01 9 137630358 137630358 C T COL5A1 Silent p.P476P 0.13 TCGA-CA-6717-01 9 137630595 137630595 C A COL5A1 Missense_Mutation p.L479I 0.13 probably_damaging(0.996) TCGA-CA-6717-01 9 137694813 137694813 C T COL5A1 Missense_Mutation p.P1029L 0.21 benign(0.037) TCGA-CA-6717-01 9 137707474 137707474 C T COL5A1 Missense_Mutation p.A1356V 0.22 unknown(0) TCGA-CA-6717-01 9 137726874 137726874 C T COL5A1 Missense_Mutation p.R1732W 0.21 unknown(0) TCGA-CA-6717-01 9 137778357 137778357 A G FCN2 Missense_Mutation p.D214G 0.20 tolerated(1) benign(0) TCGA-CA-6717-01 9 138235273 138235273 T C C9orf62 Missense_Mutation p.V10A 0.17 tolerated_low_confidence(0.3) benign(0.294) TCGA-CA-6717-01 9 138376902 138376902 G A PPP1R26 Silent p.P182P 0.16 TCGA-CA-6717-01 9 138380565 138380565 C T PPP1R26 3'UTR 0.19 TCGA-CA-6717-01 9 138656944 138656944 C T KCNT1 Missense_Mutation p.A368V 0.09 deleterious(0) possibly_damaging(0.889) TCGA-CA-6717-01 9 139250887 139250887 G T GPSM1 Missense_Mutation p.S569I 0.22 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 9 139658233 139658233 G A LCN15 Missense_Mutation p.A80V 0.26 tolerated(0.1) possibly_damaging(0.555) TCGA-CA-6717-01 9 139849842 139849842 C T LCN12 Silent p.S190S 0.24 TCGA-CA-6717-01 9 139905964 139905964 G A ABCA2 Silent p.F1898F 0.13 TCGA-CA-6717-01 9 139946061 139946061 A C ENTPD2 Missense_Mutation p.L96R 0.11 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 140196148 140196148 C A NRARP Missense_Mutation p.R78L 0.44 deleterious(0.03) probably_damaging(0.982) TCGA-CA-6717-01 9 140446782 140446782 G A MRPL41 Silent p.E83E 0.23 TCGA-CA-6717-01 9 140483139 140483139 A G ZMYND19 Missense_Mutation p.I28T 0.10 deleterious(0) benign(0.001) TCGA-CA-6717-01 9 140508913 140508913 G A ARRDC1 Missense_Mutation p.D261N 0.15 deleterious(0.02) probably_damaging(0.979) TCGA-CA-6717-01 9 140637868 140637868 A C EHMT1 Missense_Mutation p.K290T 0.14 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-CA-6717-01 9 140850185 140850185 G A CACNA1B Missense_Mutation p.R369H 0.27 deleterious(0) benign(0.144) TCGA-CA-6717-01 9 140852061 140852061 G A CACNA1B Missense_Mutation p.A419T 0.10 tolerated(0.1) benign(0.066) TCGA-CA-6717-01 9 140901264 140901264 G A CACNA1B Missense_Mutation p.E674K 0.15 tolerated(0.36) benign(0.163) TCGA-CA-6717-01 9 141010099 141010099 G T CACNA1B Missense_Mutation p.K1915N 0.33 tolerated(0.38) possibly_damaging(0.677) TCGA-CA-6717-01 9 14747318 14747318 C T FREM1 Missense_Mutation p.E1985K 0.16 tolerated(0.07) benign(0.016) TCGA-CA-6717-01 9 14748525 14748525 A T FREM1 Missense_Mutation p.F1890L 0.11 tolerated(0.67) benign(0.001) TCGA-CA-6717-01 9 14750248 14750248 C T FREM1 Missense_Mutation p.A1812T 0.13 tolerated(0.38) benign(0.326) TCGA-CA-6717-01 9 14788921 14788921 T G FREM1 Missense_Mutation p.E1391D 0.21 tolerated(0.38) benign(0.005) TCGA-CA-6717-01 9 14801729 14801729 G T FREM1 Missense_Mutation p.F1205L 0.10 tolerated(0.51) benign(0.001) TCGA-CA-6717-01 9 15468952 15468952 T C PSIP1 Intron 0.08 TCGA-CA-6717-01 9 15571744 15571744 A G CCDC171 Missense_Mutation p.K55R 0.15 deleterious(0.03) possibly_damaging(0.628) TCGA-CA-6717-01 9 15623361 15623361 G T CCDC171 Nonsense_Mutation p.E258* 0.22 TCGA-CA-6717-01 9 15666281 15666281 G A CCDC171 Missense_Mutation p.E346K 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6717-01 9 15744420 15744420 A G CCDC171 Silent p.L733L 0.08 TCGA-CA-6717-01 9 15744478 15744478 G T CCDC171 Missense_Mutation p.D753Y 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6717-01 9 15744617 15744617 G A CCDC171 Missense_Mutation p.R799H 0.16 tolerated(0.58) benign(0.006) TCGA-CA-6717-01 9 15745614 15745614 G A CCDC171 Missense_Mutation p.V886I 0.26 tolerated(0.1) benign(0.007) TCGA-CA-6717-01 9 16419539 16419539 A C BNC2 Missense_Mutation p.F916L 0.28 tolerated(0.68) benign(0.003) TCGA-CA-6717-01 9 16727934 16727934 C A BNC2 Missense_Mutation p.R64M 0.16 deleterious_low_confidence(0) benign(0.343) TCGA-CA-6717-01 9 17342338 17342338 A C CNTLN Missense_Mutation p.K594N 0.10 deleterious(0) possibly_damaging(0.798) TCGA-CA-6717-01 9 17416096 17416096 C A CNTLN Missense_Mutation p.S1008Y 0.19 deleterious(0) probably_damaging(0.982) TCGA-CA-6717-01 9 17787453 17787453 A G SH3GL2 Missense_Mutation p.K136R 0.11 deleterious(0.02) probably_damaging(0.935) TCGA-CA-6717-01 9 17793415 17793415 G A SH3GL2 Missense_Mutation p.R260Q 0.15 tolerated(0.57) possibly_damaging(0.504) TCGA-CA-6717-01 9 17793465 17793465 C T SH3GL2 Missense_Mutation p.L277F 0.17 tolerated(0.79) benign(0.1) TCGA-CA-6717-01 9 17795639 17795639 C A SH3GL2 Silent p.L319L 0.11 TCGA-CA-6717-01 9 19049984 19049984 T C RRAGA Silent p.C109C 0.09 TCGA-CA-6717-01 9 19058009 19058009 C T HAUS6 Missense_Mutation p.R919K 0.09 tolerated(0.42) benign(0.05) TCGA-CA-6717-01 9 19078267 19078267 T C HAUS6 Silent p.R366R 0.07 TCGA-CA-6717-01 9 19346106 19346106 G A DENND4C Silent p.S1064S 0.09 TCGA-CA-6717-01 9 19346434 19346434 G T DENND4C Missense_Mutation p.V1174L 0.12 tolerated(0.29) benign(0.02) TCGA-CA-6717-01 9 19346888 19346888 C A DENND4C Missense_Mutation p.S1325Y 0.17 deleterious(0) possibly_damaging(0.828) TCGA-CA-6717-01 9 19786498 19786498 C A SLC24A2 Missense_Mutation p.D123Y 0.10 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 9 20929546 20929546 G T FOCAD Missense_Mutation p.G1090C 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 20933054 20933054 C T FOCAD Missense_Mutation p.S1120L 0.08 deleterious(0.01) benign(0.008) TCGA-CA-6717-01 9 20953020 20953020 T G FOCAD Missense_Mutation p.F1363C 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-CA-6717-01 9 21140997 21140997 G A IFNW1 Silent p.D191D 0.24 TCGA-CA-6717-01 9 21216752 21216752 A C IFNA16 Missense_Mutation p.L185V 0.14 deleterious(0.03) benign(0.098) TCGA-CA-6717-01 9 21239497 21239497 G T IFNA14 Nonsense_Mutation p.Y146* 0.13 TCGA-CA-6717-01 9 21239653 21239653 C A IFNA14 Missense_Mutation p.K94N 0.18 tolerated(0.15) benign(0.047) TCGA-CA-6717-01 9 21333028 21333028 A G KLHL9 Missense_Mutation p.S611P 0.10 tolerated(0.15) benign(0.224) TCGA-CA-6717-01 9 21333444 21333444 T G KLHL9 Missense_Mutation p.K472T 0.11 tolerated(0.43) benign(0.007) TCGA-CA-6717-01 9 21333678 21333678 A C KLHL9 Missense_Mutation p.L394W 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 21367536 21367536 C A IFNA13 Missense_Mutation p.K158N 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 9 21409693 21409693 G T IFNA8 Missense_Mutation p.R173I 0.10 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 9 21409950 21409950 C A IFNA8 3'UTR 0.25 TCGA-CA-6717-01 9 23692385 23692385 A C ELAVL2 3'UTR 0.19 TCGA-CA-6717-01 9 2639887 2639887 C T VLDLR Silent p.F77F 0.10 TCGA-CA-6717-01 9 26905911 26905911 A C PLAA Silent p.T662T 0.10 TCGA-CA-6717-01 9 26997807 26997807 T G LRRC19 Missense_Mutation p.T172P 0.09 deleterious(0.01) benign(0.445) TCGA-CA-6717-01 9 2729579 2729579 C T KCNV2 Missense_Mutation p.S497F 0.24 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 9 27950559 27950559 C A LINGO2 Missense_Mutation p.Q37H 0.22 deleterious(0.04) benign(0.001) TCGA-CA-6717-01 9 2831282 2831282 T C KIAA0020 Silent p.E193E 0.10 TCGA-CA-6717-01 9 32480248 32480248 C A DDX58 Missense_Mutation p.E581D 0.09 tolerated(0.07) benign(0.002) TCGA-CA-6717-01 9 32489410 32489410 C A DDX58 Missense_Mutation p.R244I 0.16 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 9 32543901 32543901 C T TOPORS Missense_Mutation p.D208N 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-CA-6717-01 9 32633592 32633592 G T TAF1L Silent p.I662I 0.16 TCGA-CA-6717-01 9 32785036 32785036 C A TMEM215 3'UTR 0.10 TCGA-CA-6717-01 9 32785166 32785166 T G TMEM215 3'UTR 0.11 TCGA-CA-6717-01 9 32785499 32785499 G T TMEM215 3'UTR 0.20 TCGA-CA-6717-01 9 32786028 32786028 C A TMEM215 3'UTR 0.19 TCGA-CA-6717-01 9 32787309 32787309 C T TMEM215 3'UTR 0.20 TCGA-CA-6717-01 9 3293120 3293120 T G RFX3 Silent p.R230R 0.20 TCGA-CA-6717-01 9 33116030 33116030 A C B4GALT1 Missense_Mutation p.N306K 0.14 deleterious(0.04) probably_damaging(0.993) TCGA-CA-6717-01 9 33120438 33120438 G A B4GALT1 Missense_Mutation p.A272V 0.09 tolerated(0.06) probably_damaging(0.941) TCGA-CA-6717-01 9 33255866 33255866 A G BAG1 Silent p.V315V 0.10 TCGA-CA-6717-01 9 33270660 33270660 C A CHMP5 Missense_Mutation p.F87L 0.22 deleterious(0) benign(0.311) TCGA-CA-6717-01 9 33354891 33354891 G T NFX1 Splice_Site p.X958_splice 0.06 TCGA-CA-6717-01 9 339015 339015 C T DOCK8 Missense_Mutation p.R478C 0.29 deleterious(0) probably_damaging(0.932) TCGA-CA-6717-01 9 33923251 33923251 G A UBAP2 Silent p.Y979Y 0.09 TCGA-CA-6717-01 9 34098321 34098321 C T DCAF12 Splice_Site p.X265_splice 0.14 TCGA-CA-6717-01 9 34310773 34310773 C A KIF24 Missense_Mutation p.R191I 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 9 34564678 34564678 C A CNTFR Nonsense_Mutation p.E80* 0.23 TCGA-CA-6717-01 9 34623885 34623885 G A ARID3C Missense_Mutation p.S184L 0.33 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 9 34648434 34648434 G A GALT Missense_Mutation p.R223H 0.19 tolerated(0.14) benign(0.005) TCGA-CA-6717-01 9 35043303 35043303 C A C9orf131 Missense_Mutation p.S226Y 0.23 deleterious(0.04) possibly_damaging(0.742) TCGA-CA-6717-01 9 35044986 35044986 T C C9orf131 Missense_Mutation p.L787P 0.15 deleterious(0) probably_damaging(0.961) TCGA-CA-6717-01 9 35045002 35045002 G T C9orf131 Missense_Mutation p.K792N 0.21 deleterious(0.02) possibly_damaging(0.677) TCGA-CA-6717-01 9 35060498 35060498 A C VCP Missense_Mutation p.F503V 0.18 deleterious(0) possibly_damaging(0.875) TCGA-CA-6717-01 9 35074492 35074492 C T FANCG Splice_Site p.X546_splice 0.10 TCGA-CA-6717-01 9 35107382 35107382 A G FAM214B Missense_Mutation p.V297A 0.23 tolerated(1) benign(0.002) TCGA-CA-6717-01 9 35310471 35310471 A C UNC13B Missense_Mutation p.S257R 0.23 tolerated_low_confidence(0.09) benign(0.01) TCGA-CA-6717-01 9 35400379 35400379 T C UNC13B Silent p.S1392S 0.12 TCGA-CA-6717-01 9 35401992 35401992 C T UNC13B Intron 0.15 TCGA-CA-6717-01 9 35449830 35449830 C T ATP8B5P RNA 0.22 TCGA-CA-6717-01 9 35546782 35546782 T C RUSC2 Silent p.S88S 0.18 TCGA-CA-6717-01 9 35704342 35704342 A C TLN1 Missense_Mutation p.F2012V 0.22 deleterious(0) probably_damaging(0.985) TCGA-CA-6717-01 9 35736084 35736084 G A CREB3 Silent p.V217V 0.20 TCGA-CA-6717-01 9 35751994 35751994 G T RGP1 Missense_Mutation p.E268D 0.09 tolerated(0.18) benign(0.05) TCGA-CA-6717-01 9 35752822 35752822 T C RGP1 Missense_Mutation p.L376P 0.28 tolerated(0.13) benign(0.005) TCGA-CA-6717-01 9 35808283 35808283 T G SPAG8 Missense_Mutation p.N465H 0.21 tolerated_low_confidence(0.13) benign(0) TCGA-CA-6717-01 9 36083481 36083481 T G RECK Missense_Mutation p.C187G 0.27 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 9 36087778 36087778 T C RECK Missense_Mutation p.I242T 0.15 deleterious(0.03) possibly_damaging(0.794) TCGA-CA-6717-01 9 36169968 36169968 C T CCIN Missense_Mutation p.R157W 0.24 deleterious(0) probably_damaging(0.94) TCGA-CA-6717-01 9 36671142 36671142 A T MELK Missense_Mutation p.R551S 0.09 tolerated(0.28) benign(0.367) TCGA-CA-6717-01 9 36677295 36677295 A C MELK Missense_Mutation p.K639N 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 37440856 37440856 T C ZBTB5 Missense_Mutation p.N565D 0.10 tolerated(0.19) benign(0.112) TCGA-CA-6717-01 9 37740152 37740152 C T FRMPD1 Missense_Mutation p.R543C 0.23 tolerated(0.19) benign(0.003) TCGA-CA-6717-01 9 37745007 37745007 C A FRMPD1 Missense_Mutation p.S993Y 0.27 tolerated_low_confidence(1) benign(0.035) TCGA-CA-6717-01 9 37745993 37745993 A G FRMPD1 Missense_Mutation p.N1322D 0.17 tolerated(0.3) benign(0.006) TCGA-CA-6717-01 9 37762573 37762573 G T TRMT10B Splice_Site p.X63_splice 0.22 TCGA-CA-6717-01 9 37776386 37776386 A G TRMT10B Missense_Mutation p.I276M 0.19 deleterious(0.04) benign(0.378) TCGA-CA-6717-01 9 39149891 39149891 C A CNTNAP3 Missense_Mutation p.D521Y 0.09 deleterious(0) possibly_damaging(0.702) TCGA-CA-6717-01 9 39149966 39149966 C T CNTNAP3 Missense_Mutation p.D496N 0.08 tolerated(0.48) benign(0.02) TCGA-CA-6717-01 9 39171472 39171472 G A CNTNAP3 Silent p.F409F 0.09 TCGA-CA-6717-01 9 399161 399161 G A DOCK8 Missense_Mutation p.E1046K 0.21 tolerated(0.1) benign(0.134) TCGA-CA-6717-01 9 40716044 40716044 G T FAM74A3 RNA 0.13 TCGA-CA-6717-01 9 40773192 40773192 A C ZNF658 Missense_Mutation p.F695V 0.07 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 9 4286213 4286213 C A GLIS3 Missense_Mutation p.Q71H 0.13 deleterious(0.01) possibly_damaging(0.667) TCGA-CA-6717-01 9 43815872 43815872 C A CNTNAP3B Missense_Mutation p.S209Y 0.09 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 9 4663699 4663699 C A PPAPDC2 3'UTR 0.14 TCGA-CA-6717-01 9 5021980 5021980 G T JAK2 5'UTR 0.12 TCGA-CA-6717-01 9 5054768 5054768 G T JAK2 Nonsense_Mutation p.E274* 0.11 TCGA-CA-6717-01 9 5080282 5080282 A C JAK2 Missense_Mutation p.N729H 0.17 tolerated(0.07) benign(0.012) TCGA-CA-6717-01 9 5126702 5126702 G T JAK2 Nonsense_Mutation p.E1104* 0.27 TCGA-CA-6717-01 9 5163999 5163999 C A INSL6 Nonsense_Mutation p.E186* 0.12 TCGA-CA-6717-01 9 5164010 5164010 C T INSL6 Missense_Mutation p.G182E 0.29 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 9 5304527 5304527 T G RLN2 Missense_Mutation p.Q18H 0.24 tolerated(0.14) probably_damaging(0.969) TCGA-CA-6717-01 9 5431904 5431904 C T PLGRKT Missense_Mutation p.R25Q 0.18 tolerated(0.47) benign(0.028) TCGA-CA-6717-01 9 5457128 5457128 C T CD274 Silent p.S34S 0.22 TCGA-CA-6717-01 9 5765684 5765684 T C KIAA1432 Missense_Mutation p.F1008S 0.10 tolerated(0.18) benign(0.064) TCGA-CA-6717-01 9 5787060 5787060 C T ERMP1 3'UTR 0.17 TCGA-CA-6717-01 9 5811134 5811134 T G ERMP1 Missense_Mutation p.K435T 0.21 deleterious(0.05) possibly_damaging(0.756) TCGA-CA-6717-01 9 5906980 5906980 G T MLANA Missense_Mutation p.E90D 0.18 tolerated(0.29) benign(0.038) TCGA-CA-6717-01 9 5921756 5921756 A G KIAA2026 Missense_Mutation p.S1414P 0.10 tolerated(0.43) possibly_damaging(0.566) TCGA-CA-6717-01 9 5929151 5929151 C A KIAA2026 Missense_Mutation p.W797C 0.17 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 9 5968205 5968205 T C KIAA2026 Missense_Mutation p.K676E 0.18 deleterious(0.04) possibly_damaging(0.885) TCGA-CA-6717-01 9 6007555 6007555 T G KIAA2026 Missense_Mutation p.E78A 0.12 deleterious(0) probably_damaging(0.986) TCGA-CA-6717-01 9 6012763 6012763 G A RANBP6 Missense_Mutation p.R949C 0.19 tolerated(0.06) possibly_damaging(0.608) TCGA-CA-6717-01 9 6012865 6012865 G A RANBP6 Missense_Mutation p.R915W 0.20 deleterious(0) benign(0.142) TCGA-CA-6717-01 9 6329395 6329395 G A TPD52L3 3'UTR 0.22 TCGA-CA-6717-01 9 6329581 6329581 T C TPD52L3 3'UTR 0.17 TCGA-CA-6717-01 9 6329698 6329698 G T TPD52L3 3'UTR 0.21 TCGA-CA-6717-01 9 6330051 6330051 G T TPD52L3 3'UTR 0.17 TCGA-CA-6717-01 9 6486894 6486894 T G UHRF2 Missense_Mutation p.L489R 0.09 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 9 6554716 6554716 G T GLDC Missense_Mutation p.F756L 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-CA-6717-01 9 6587187 6587187 A C GLDC Missense_Mutation p.L602V 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 9 6620204 6620204 G T GLDC Missense_Mutation p.N150K 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 9 67930449 67930449 G T ANKRD20A1 Missense_Mutation p.R89I 0.37 deleterious(0) probably_damaging(0.928) TCGA-CA-6717-01 9 67938645 67938645 A C ANKRD20A1 Missense_Mutation p.K260N 0.05 deleterious(0.02) benign(0.039) TCGA-CA-6717-01 9 70919399 70919399 T C FOXD4L3 3'UTR 0.06 TCGA-CA-6717-01 9 70919496 70919496 T C FOXD4L3 3'UTR 0.19 TCGA-CA-6717-01 9 71002416 71002416 C A PGM5 Silent p.L203L 0.23 TCGA-CA-6717-01 9 71002422 71002422 G T PGM5 Silent p.R205R 0.12 TCGA-CA-6717-01 9 71006615 71006615 T C PGM5 Missense_Mutation p.F288S 0.22 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 9 71152352 71152352 A G TMEM252 Silent p.C112C 0.12 TCGA-CA-6717-01 9 71155658 71155658 C T TMEM252 Missense_Mutation p.A25T 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-CA-6717-01 9 71714895 71714895 T G FXN 3'UTR 0.17 TCGA-CA-6717-01 9 71833174 71833174 G T TJP2 Nonsense_Mutation p.E112* 0.12 TCGA-CA-6717-01 9 71849414 71849414 A C TJP2 Missense_Mutation p.E608D 0.27 tolerated(0.59) benign(0.041) TCGA-CA-6717-01 9 71986475 71986475 C A FAM189A2 Missense_Mutation p.L25I 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 9 72000798 72000798 G A FAM189A2 Missense_Mutation p.R264K 0.27 tolerated(0.34) benign(0.005) TCGA-CA-6717-01 9 72338340 72338340 T C PTAR1 Silent p.E283E 0.08 TCGA-CA-6717-01 9 72471509 72471509 G T C9orf135 Missense_Mutation p.M100I 0.13 tolerated(0.58) benign(0) TCGA-CA-6717-01 9 72879243 72879243 C A SMC5 Missense_Mutation p.S70Y 0.11 tolerated(1) benign(0.001) TCGA-CA-6717-01 9 72965340 72965340 A G SMC5 Missense_Mutation p.T1040A 0.18 deleterious(0.02) possibly_damaging(0.734) TCGA-CA-6717-01 9 73167779 73167779 A G TRPM3 Silent p.D1173D 0.23 TCGA-CA-6717-01 9 73235036 73235036 G A TRPM3 Silent p.N683N 0.12 TCGA-CA-6717-01 9 73240407 73240407 G T TRPM3 Intron 0.14 TCGA-CA-6717-01 9 73296492 73296492 A C TRPM3 Missense_Mutation p.I425M 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 9 73376346 73376346 G T TRPM3 Intron 0.32 TCGA-CA-6717-01 9 734697 734697 A C KANK1 Intron 0.11 TCGA-CA-6717-01 9 74061581 74061581 C T TRPM3 Silent p.S57S 0.16 TCGA-CA-6717-01 9 74485059 74485059 G A ABHD17B Missense_Mutation p.S196L 0.13 deleterious(0) possibly_damaging(0.867) TCGA-CA-6717-01 9 74489682 74489682 A C ABHD17B Silent p.G105G 0.19 TCGA-CA-6717-01 9 74840688 74840688 T G GDA Silent p.L270L 0.09 TCGA-CA-6717-01 9 74975592 74975592 T A ZFAND5 Nonsense_Mutation p.K35* 0.12 TCGA-CA-6717-01 9 75527003 75527003 G T ALDH1A1 Silent p.L357L 0.24 TCGA-CA-6717-01 9 75782441 75782441 C A ANXA1 Missense_Mutation p.F277L 0.31 deleterious(0.01) possibly_damaging(0.8) TCGA-CA-6717-01 9 75783967 75783967 A G ANXA1 Missense_Mutation p.K294R 0.12 tolerated(0.41) benign(0.013) TCGA-CA-6717-01 9 77257573 77257573 C T RORB Missense_Mutation p.S160F 0.28 deleterious(0.01) benign(0.105) TCGA-CA-6717-01 9 77339597 77339597 C A TRPM6 Nonsense_Mutation p.E2001* 0.30 TCGA-CA-6717-01 9 77359044 77359044 T G TRPM6 Missense_Mutation p.K1701Q 0.24 tolerated(0.16) benign(0.279) TCGA-CA-6717-01 9 77370283 77370283 T G TRPM6 Missense_Mutation p.K1631T 0.21 tolerated_low_confidence(0.26) benign(0.003) TCGA-CA-6717-01 9 77435335 77435335 C T TRPM6 Missense_Mutation p.R340Q 0.26 tolerated(0.59) benign(0.148) TCGA-CA-6717-01 9 77613530 77613530 C A C9orf41 Missense_Mutation p.E298D 0.10 tolerated(0.07) possibly_damaging(0.708) TCGA-CA-6717-01 9 77684830 77684830 A C NMRK1 Missense_Mutation p.F100V 0.17 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 9 79119972 79119972 T G GCNT1 3'UTR 0.25 TCGA-CA-6717-01 9 79322443 79322443 C A PRUNE2 Nonsense_Mutation p.E1583* 0.10 TCGA-CA-6717-01 9 79322653 79322653 G T PRUNE2 Missense_Mutation p.L1513I 0.09 tolerated(0.19) benign(0.338) TCGA-CA-6717-01 9 79322945 79322945 C G PRUNE2 Silent p.V1415V 0.09 TCGA-CA-6717-01 9 79323566 79323566 A G PRUNE2 Silent p.N1208N 0.24 TCGA-CA-6717-01 9 79520895 79520895 T G PRUNE2 5'UTR 0.09 TCGA-CA-6717-01 9 79634681 79634681 C T FOXB2 Silent p.S37S 0.13 TCGA-CA-6717-01 9 79814895 79814895 A C VPS13A Missense_Mutation p.E45D 0.08 deleterious(0.01) probably_damaging(0.972) TCGA-CA-6717-01 9 79898329 79898329 G A VPS13A Silent p.S1059S 0.10 TCGA-CA-6717-01 9 79898522 79898522 A C VPS13A Missense_Mutation p.N1099H 0.23 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 9 79930290 79930290 G T VPS13A Nonsense_Mutation p.E1512* 0.13 TCGA-CA-6717-01 9 79952270 79952270 G T VPS13A Missense_Mutation p.K2065N 0.25 tolerated(0.09) benign(0.424) TCGA-CA-6717-01 9 79972672 79972672 G T VPS13A Missense_Mutation p.R2624I 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 9 80854978 80854978 C T CEP78 Missense_Mutation p.A98V 0.09 deleterious(0.05) benign(0.007) TCGA-CA-6717-01 9 82333864 82333864 C T TLE4 Missense_Mutation p.P523L 0.20 deleterious(0.01) possibly_damaging(0.907) TCGA-CA-6717-01 9 8376627 8376627 G A PTPRD Nonsense_Mutation p.R1496* 0.13 TCGA-CA-6717-01 9 84605880 84605880 G A SPATA31D1 Silent p.A165A 0.22 TCGA-CA-6717-01 9 84606092 84606092 A G SPATA31D1 Missense_Mutation p.D236G 0.10 deleterious(0.02) probably_damaging(0.968) TCGA-CA-6717-01 9 84609597 84609597 A C SPATA31D1 Missense_Mutation p.K1404N 0.14 tolerated(0.14) possibly_damaging(0.593) TCGA-CA-6717-01 9 8465518 8465518 C T PTPRD Missense_Mutation p.S1221N 0.08 tolerated(0.43) benign(0.001) TCGA-CA-6717-01 9 8485968 8485968 A C PTPRD Missense_Mutation p.I950S 0.09 tolerated(0.64) benign(0.398) TCGA-CA-6717-01 9 85620360 85620360 T C RASEF Missense_Mutation p.N362D 0.19 deleterious(0.01) benign(0.301) TCGA-CA-6717-01 9 85928646 85928646 C A FRMD3 Missense_Mutation p.V205F 0.19 tolerated(0.12) benign(0.302) TCGA-CA-6717-01 9 85950526 85950526 C A FRMD3 Missense_Mutation p.E167D 0.10 tolerated(0.21) benign(0.038) TCGA-CA-6717-01 9 86258649 86258649 T C IDNK Missense_Mutation p.V173A 0.10 deleterious(0.03) benign(0.122) TCGA-CA-6717-01 9 86276796 86276796 A C UBQLN1 Missense_Mutation p.F559C 0.17 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 9 86292809 86292809 C T UBQLN1 Missense_Mutation p.R313H 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-CA-6717-01 9 86457248 86457248 C A KIF27 Missense_Mutation p.D1209Y 0.14 deleterious(0) probably_damaging(0.967) TCGA-CA-6717-01 9 86570502 86570502 G A C9orf64 Missense_Mutation p.R131W 0.12 deleterious(0.01) possibly_damaging(0.806) TCGA-CA-6717-01 9 86616941 86616941 G A RMI1 Missense_Mutation p.R347Q 0.24 tolerated(0.58) benign(0.002) TCGA-CA-6717-01 9 86617062 86617062 A C RMI1 Missense_Mutation p.K387N 0.09 tolerated(0.19) benign(0.017) TCGA-CA-6717-01 9 86903047 86903047 G A SLC28A3 Missense_Mutation p.A399V 0.17 deleterious(0.03) possibly_damaging(0.775) TCGA-CA-6717-01 9 87325569 87325569 C A NTRK2 Missense_Mutation p.P149Q 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 88162011 88162011 G T AGTPBP1 3'UTR 0.10 TCGA-CA-6717-01 9 88200486 88200486 A G AGTPBP1 Silent p.H979H 0.08 TCGA-CA-6717-01 9 88236184 88236184 C A AGTPBP1 Missense_Mutation p.D638Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 9 88257750 88257750 C A AGTPBP1 Missense_Mutation p.D392Y 0.09 deleterious(0) probably_damaging(0.919) TCGA-CA-6717-01 9 88261242 88261242 A C AGTPBP1 Missense_Mutation p.N353K 0.17 tolerated(0.78) benign(0.002) TCGA-CA-6717-01 9 88573470 88573470 G A NAA35 Missense_Mutation p.R81Q 0.19 tolerated(0.1) possibly_damaging(0.768) TCGA-CA-6717-01 9 88651280 88651280 T G GOLM1 Missense_Mutation p.K247T 0.15 deleterious(0.02) possibly_damaging(0.859) TCGA-CA-6717-01 9 88842942 88842942 G T C9orf153 Missense_Mutation p.P24T 0.26 deleterious(0) probably_damaging(0.958) TCGA-CA-6717-01 9 88937281 88937281 T G ZCCHC6 Missense_Mutation p.K996T 0.11 tolerated(0.06) benign(0.026) TCGA-CA-6717-01 9 88952197 88952197 T G ZCCHC6 Intron 0.17 TCGA-CA-6717-01 9 90315115 90315115 G A DAPK1 Missense_Mutation p.R945Q 0.09 deleterious(0.01) possibly_damaging(0.539) TCGA-CA-6717-01 9 90500235 90500235 G T SPATA31E1 Missense_Mutation p.S278I 0.23 deleterious(0.01) benign(0.366) TCGA-CA-6717-01 9 90582400 90582400 G A CDK20 Missense_Mutation p.R340W 0.12 tolerated_low_confidence(0.06) benign(0) TCGA-CA-6717-01 9 91063884 91063884 G T SPIN1 Missense_Mutation p.M27I 0.09 tolerated(0.13) benign(0.003) TCGA-CA-6717-01 9 91262229 91262229 T C RP13-60M5.2 RNA 0.33 TCGA-CA-6717-01 9 91605903 91605903 C T C9orf47 5'UTR 0.18 TCGA-CA-6717-01 9 91605908 91605908 G T C9orf47 5'UTR 0.21 TCGA-CA-6717-01 9 91610008 91610008 A G C9orf47 3'UTR 0.09 TCGA-CA-6717-01 9 91943646 91943646 T G SECISBP2 Missense_Mutation p.F216V 0.19 deleterious(0.03) possibly_damaging(0.902) TCGA-CA-6717-01 9 92002317 92002317 G T SEMA4D Silent p.V438V 0.12 TCGA-CA-6717-01 9 92220676 92220676 T G GADD45G Missense_Mutation p.F84V 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 9 94171617 94171617 T G NFIL3 3'UTR 0.10 TCGA-CA-6717-01 9 94486132 94486132 A C ROR2 Missense_Mutation p.S882A 0.11 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CA-6717-01 9 95012188 95012188 A G IARS Silent p.D856D 0.12 TCGA-CA-6717-01 9 95073468 95073468 G A NOL8 Missense_Mutation p.S811L 0.26 tolerated(0.67) benign(0.01) TCGA-CA-6717-01 9 95077655 95077655 A G NOL8 Missense_Mutation p.C418R 0.11 tolerated(0.19) benign(0.002) TCGA-CA-6717-01 9 95094453 95094453 A G CENPP Missense_Mutation p.K37E 0.09 tolerated(0.08) benign(0.292) TCGA-CA-6717-01 9 95152321 95152321 C T OGN Missense_Mutation p.D149N 0.14 deleterious(0.02) probably_damaging(0.918) TCGA-CA-6717-01 9 95219736 95219736 C A ASPN Missense_Mutation p.R326I 0.08 tolerated(0.08) benign(0.001) TCGA-CA-6717-01 9 95263106 95263106 C A ECM2 Nonsense_Mutation p.E612* 0.22 TCGA-CA-6717-01 9 95418822 95418822 C A IPPK Missense_Mutation p.E47D 0.12 tolerated(0.11) possibly_damaging(0.831) TCGA-CA-6717-01 9 95993235 95993235 A C WNK2 Missense_Mutation p.K307T 0.10 unknown(0) TCGA-CA-6717-01 9 96051326 96051326 C T WNK2 Silent p.L1467L 0.20 TCGA-CA-6717-01 9 97080968 97080968 T G NUTM2F Silent p.R684R 0.08 TCGA-CA-6717-01 9 97081237 97081237 G T NUTM2F Missense_Mutation p.S594Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 9 97087725 97087725 C T NUTM2F Missense_Mutation p.V170M 0.18 tolerated(0.11) benign(0.158) TCGA-CA-6717-01 9 97087909 97087909 G T NUTM2F Silent p.V108V 0.07 TCGA-CA-6717-01 9 97522329 97522329 G T C9orf3 Missense_Mutation p.R88S 0.09 tolerated_low_confidence(0.88) benign(0.001) TCGA-CA-6717-01 9 97522450 97522450 A C C9orf3 Missense_Mutation p.K129Q 0.11 tolerated(0.08) benign(0.009) TCGA-CA-6717-01 9 97887365 97887365 A C FANCC Intron 0.11 TCGA-CA-6717-01 9 98660249 98660249 A C ERCC6L2 Missense_Mutation p.K208T 0.26 tolerated(0.13) benign(0.099) TCGA-CA-6717-01 9 98685613 98685613 T C ERCC6L2 Silent p.D506D 0.10 TCGA-CA-6717-01 9 98734992 98734992 G T ERCC6L2 3'Flank 0.12 TCGA-CA-6717-01 9 98735055 98735055 G T ERCC6L2 3'Flank 0.29 TCGA-CA-6717-01 9 98775266 98775266 C A ERCC6L2 Missense_Mutation p.F450L 0.19 deleterious(0) possibly_damaging(0.718) TCGA-CA-6717-01 9 990729 990729 G A DMRT3 Silent p.S381S 0.20 TCGA-CA-6717-01 9 99521589 99521589 C A ZNF510 Missense_Mutation p.R508I 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 9 99581064 99581064 C A ZNF782 Missense_Mutation p.R414I 0.12 deleterious(0.02) probably_damaging(0.978) TCGA-CA-6717-01 9 99581827 99581827 C A ZNF782 Nonsense_Mutation p.E160* 0.22 TCGA-CA-6717-01 9 99799862 99799862 C A CTSV Missense_Mutation p.K54N 0.23 tolerated(0.11) probably_damaging(0.981) TCGA-CA-6717-01 9 99800314 99800314 C T CTSV Silent p.S4S 0.11 TCGA-CA-6717-01 X 100075445 100075445 T C CSTF2 Missense_Mutation p.S14P 0.26 deleterious(0) probably_damaging(0.961) TCGA-CA-6717-01 X 100093247 100093247 T C CSTF2 Missense_Mutation p.V544A 0.19 deleterious(0.04) probably_damaging(0.987) TCGA-CA-6717-01 X 100169388 100169388 C T XKRX Missense_Mutation p.R430Q 0.40 tolerated(0.76) benign(0) TCGA-CA-6717-01 X 100608283 100608283 T C BTK Missense_Mutation p.N603D 0.33 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 X 100626666 100626666 T G BTK Missense_Mutation p.E88D 0.26 tolerated(0.55) benign(0) TCGA-CA-6717-01 X 100662915 100662915 A C RPL36A-HNRNPH2 Intron 0.25 TCGA-CA-6717-01 X 100807926 100807926 C T ARMCX1 Missense_Mutation p.R5W 0.17 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CA-6717-01 X 100808893 100808893 A G ARMCX1 Missense_Mutation p.Y327C 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6717-01 X 100809386 100809386 A C ARMCX1 3'UTR 0.17 TCGA-CA-6717-01 X 100880741 100880741 G T ARMCX3 Nonsense_Mutation p.E258* 0.23 TCGA-CA-6717-01 X 100880856 100880856 A C ARMCX3 Missense_Mutation p.K296T 0.13 tolerated(0.14) probably_damaging(0.913) TCGA-CA-6717-01 X 10106820 10106820 G A WWC3 Silent p.S976S 0.10 TCGA-CA-6717-01 X 101382489 101382489 T C TCEAL2 3'UTR 0.19 TCGA-CA-6717-01 X 101396177 101396177 C A TCEAL6 Nonsense_Mutation p.E43* 0.39 TCGA-CA-6717-01 X 101623482 101623482 G A NXF2B Missense_Mutation p.L232F 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 101623744 101623744 C A NXF2B Missense_Mutation p.K206N 0.13 deleterious(0.02) benign(0.131) TCGA-CA-6717-01 X 101624641 101624641 G A NXF2B Nonsense_Mutation p.R84* 0.18 TCGA-CA-6717-01 X 101858054 101858054 G A ARMCX5 Missense_Mutation p.E329K 0.19 deleterious(0) benign(0.282) TCGA-CA-6717-01 X 101970317 101970317 G T GPRASP2 Nonsense_Mutation p.E174* 0.42 TCGA-CA-6717-01 X 101971811 101971811 C A GPRASP2 Missense_Mutation p.L672I 0.13 deleterious(0.02) probably_damaging(0.982) TCGA-CA-6717-01 X 101972172 101972172 A C GPRASP2 Missense_Mutation p.K792T 0.18 deleterious(0) probably_damaging(0.925) TCGA-CA-6717-01 X 102005277 102005277 T C BHLHB9 Silent p.L452L 0.24 TCGA-CA-6717-01 X 102333531 102333531 C T NXF3 Missense_Mutation p.A470T 0.18 deleterious(0.04) possibly_damaging(0.898) TCGA-CA-6717-01 X 102337746 102337746 G A NXF3 Missense_Mutation p.S241L 0.24 tolerated(1) benign(0) TCGA-CA-6717-01 X 102586694 102586694 G C TCEAL7 3'UTR 0.13 TCGA-CA-6717-01 X 102632392 102632392 A C NGFRAP1 Intron 0.65 TCGA-CA-6717-01 X 102632645 102632645 G T NGFRAP1 Nonsense_Mutation p.E76* 0.17 TCGA-CA-6717-01 X 104961455 104961455 G A IL1RAPL2 Missense_Mutation p.E290K 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-CA-6717-01 X 104999218 104999218 G T IL1RAPL2 Missense_Mutation p.D414Y 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CA-6717-01 X 105011230 105011230 C A IL1RAPL2 Missense_Mutation p.S546Y 0.53 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 105168910 105168910 C T NRK Nonsense_Mutation p.R1068* 0.27 TCGA-CA-6717-01 X 105190375 105190375 G T NRK Missense_Mutation p.K1425N 0.26 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 X 105278335 105278335 G T SERPINA7 Missense_Mutation p.A312D 0.12 deleterious(0) probably_damaging(0.939) TCGA-CA-6717-01 X 105279362 105279362 G A SERPINA7 Missense_Mutation p.P213S 0.35 deleterious(0.02) possibly_damaging(0.884) TCGA-CA-6717-01 X 105449577 105449577 A G MUM1L1 Missense_Mutation p.D51G 0.15 tolerated(0.06) benign(0.115) TCGA-CA-6717-01 X 105450143 105450143 T C MUM1L1 Silent p.L240L 0.40 TCGA-CA-6717-01 X 105452056 105452056 C T MUM1L1 3'UTR 0.35 TCGA-CA-6717-01 X 106097473 106097473 C T TBC1D8B Nonsense_Mutation p.R767* 0.32 TCGA-CA-6717-01 X 106117068 106117068 T G TBC1D8B Missense_Mutation p.F1079C 0.54 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 X 106172858 106172858 G T CLDN2 3'UTR 0.14 TCGA-CA-6717-01 X 107084414 107084414 G T MID2 Missense_Mutation p.K173N 0.50 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 X 107422477 107422477 G T COL4A6 Missense_Mutation p.L776I 0.36 benign(0.115) TCGA-CA-6717-01 X 107431872 107431872 G A COL4A6 Missense_Mutation p.P489S 0.14 possibly_damaging(0.522) TCGA-CA-6717-01 X 107457382 107457382 A C COL4A6 Missense_Mutation p.F135C 0.21 unknown(0) TCGA-CA-6717-01 X 107975830 107975830 G T IRS4 Missense_Mutation p.Q1249K 0.30 tolerated_low_confidence(1) unknown(0) TCGA-CA-6717-01 X 107976310 107976310 A G IRS4 Missense_Mutation p.S1089P 0.28 tolerated_low_confidence(0.06) unknown(0) TCGA-CA-6717-01 X 108904803 108904803 T C ACSL4 Missense_Mutation p.K593E 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 X 109696016 109696016 G A RGAG1 Missense_Mutation p.S724N 0.33 tolerated(0.21) benign(0.02) TCGA-CA-6717-01 X 109697089 109697089 A C RGAG1 Missense_Mutation p.M1082L 0.50 tolerated(0.11) benign(0.006) TCGA-CA-6717-01 X 109764405 109764405 C A TDGF1P3 RNA 0.23 TCGA-CA-6717-01 X 110006014 110006014 A C CHRDL1 Missense_Mutation p.F39C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 X 110494480 110494480 G A CAPN6 Missense_Mutation p.R310C 0.29 deleterious(0.02) benign(0.392) TCGA-CA-6717-01 X 110496354 110496354 C A CAPN6 Nonsense_Mutation p.E130* 0.22 TCGA-CA-6717-01 X 110507060 110507060 C A CAPN6 Missense_Mutation p.E35D 0.36 tolerated(0.29) possibly_damaging(0.874) TCGA-CA-6717-01 X 110644444 110644445 - G DCX Frame_Shift_Ins p.Q241Pfs*5 0.09 TCGA-CA-6717-01 X 110653361 110653361 C T DCX Missense_Mutation p.R170Q 0.53 deleterious(0.01) possibly_damaging(0.849) TCGA-CA-6717-01 X 110928264 110928264 A C ALG13 Missense_Mutation p.N106H 0.37 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-CA-6717-01 X 110964891 110964891 G A ALG13 Missense_Mutation p.E463K 0.21 tolerated(0.07) probably_damaging(0.985) TCGA-CA-6717-01 X 110970087 110970087 C T ALG13 Nonsense_Mutation p.R594* 0.19 TCGA-CA-6717-01 X 111078328 111078328 G T TRPC5 Missense_Mutation p.Q573K 0.31 deleterious(0) possibly_damaging(0.679) TCGA-CA-6717-01 X 11133059 11133059 A C HCCS Silent p.R69R 0.26 TCGA-CA-6717-01 X 111698907 111698907 C A ZCCHC16 3'UTR 0.10 TCGA-CA-6717-01 X 111699446 111699446 A C ZCCHC16 3'UTR 0.45 TCGA-CA-6717-01 X 111699655 111699655 C T ZCCHC16 3'UTR 0.46 TCGA-CA-6717-01 X 11174725 11174725 C T ARHGAP6 Missense_Mutation p.E611K 0.35 deleterious(0) probably_damaging(0.946) TCGA-CA-6717-01 X 111903866 111903866 T C LHFPL1 Missense_Mutation p.Q157R 0.16 tolerated(0.5) possibly_damaging(0.552) TCGA-CA-6717-01 X 112022766 112022766 C T AMOT Silent p.S872S 0.20 TCGA-CA-6717-01 X 112065721 112065721 T C AMOT Missense_Mutation p.T212A 0.22 unknown(0) TCGA-CA-6717-01 X 11316982 11316982 G A AMELX Silent p.P167P 0.48 TCGA-CA-6717-01 X 114141426 114141426 G T HTR2C Missense_Mutation p.E275D 0.15 tolerated(0.67) benign(0.012) TCGA-CA-6717-01 X 114141530 114141530 C T HTR2C Missense_Mutation p.S310L 0.37 deleterious(0) benign(0.029) TCGA-CA-6717-01 X 114141708 114141708 T G HTR2C Silent p.T369T 0.20 TCGA-CA-6717-01 X 114239848 114239848 C T IL13RA2 Missense_Mutation p.R343H 0.18 tolerated(0.52) benign(0) TCGA-CA-6717-01 X 114239865 114239865 C T IL13RA2 Silent p.S337S 0.42 TCGA-CA-6717-01 X 114424061 114424061 C T RBMXL3 Silent p.T19T 0.21 TCGA-CA-6717-01 X 114541192 114541192 T C LUZP4 Silent p.T255T 0.22 TCGA-CA-6717-01 X 115303749 115303749 A C AGTR2 Missense_Mutation p.Q72H 0.25 tolerated(0.62) benign(0.009) TCGA-CA-6717-01 X 115305074 115305074 T G AGTR2 3'UTR 0.51 TCGA-CA-6717-01 X 115306210 115306210 T G AGTR2 3'UTR 0.13 TCGA-CA-6717-01 X 117582902 117582902 C A WDR44 Missense_Mutation p.F898L 0.24 tolerated(0.09) benign(0.145) TCGA-CA-6717-01 X 117702069 117702069 A C DOCK11 Missense_Mutation p.K327Q 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-CA-6717-01 X 117727211 117727211 A T DOCK11 Missense_Mutation p.K725I 0.46 deleterious(0) possibly_damaging(0.855) TCGA-CA-6717-01 X 117925892 117925892 T G IL13RA1 3'UTR 0.62 TCGA-CA-6717-01 X 117960724 117960725 - A ZCCHC12 3'UTR 0.16 TCGA-CA-6717-01 X 118540433 118540433 C T SLC25A43 Silent p.L96L 0.24 TCGA-CA-6717-01 X 118603829 118603829 G T SLC25A5 Missense_Mutation p.R106I 0.30 deleterious(0.01) benign(0.372) TCGA-CA-6717-01 X 118754013 118754013 A G SEPT6 Intron 0.15 TCGA-CA-6717-01 X 118784021 118784021 G A SEPT6 Missense_Mutation p.S190L 0.17 deleterious(0) benign(0.419) TCGA-CA-6717-01 X 119004756 119004756 A C RNF113A Missense_Mutation p.V274G 0.14 deleterious(0) probably_damaging(0.97) TCGA-CA-6717-01 X 119037521 119037521 G A AKAP14 Missense_Mutation p.G78D 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6717-01 X 119054496 119054496 A C AKAP14 Missense_Mutation p.N174H 0.41 tolerated(0.19) benign(0.012) TCGA-CA-6717-01 X 119389541 119389541 A G ZBTB33 3'UTR 0.15 TCGA-CA-6717-01 X 119419526 119419526 G T TMEM255A Missense_Mutation p.S150Y 0.49 tolerated(0.11) benign(0.206) TCGA-CA-6717-01 X 119425124 119425124 G T TMEM255A Silent p.V112V 0.17 TCGA-CA-6717-01 X 119575597 119575597 T G LAMP2 Missense_Mutation p.K361Q 0.18 tolerated(0.13) benign(0.142) TCGA-CA-6717-01 X 119739274 119739274 A C MCTS1 Missense_Mutation p.K9N 0.41 deleterious(0.03) benign(0.097) TCGA-CA-6717-01 X 120009207 120009207 G A CT47B1 Silent p.F106F 0.16 TCGA-CA-6717-01 X 120182437 120182437 G T GLUD2 Missense_Mutation p.R300I 0.16 tolerated(0.14) benign(0.102) TCGA-CA-6717-01 X 122318312 122318312 C A GRIA3 5'UTR 0.50 TCGA-CA-6717-01 X 122757776 122757776 T G THOC2 Missense_Mutation p.N1122T 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 X 122758465 122758465 C T THOC2 Missense_Mutation p.R1038Q 0.37 deleterious(0) probably_damaging(0.98) TCGA-CA-6717-01 X 123041019 123041019 T G XIAP Missense_Mutation p.I494M 0.49 deleterious(0) possibly_damaging(0.738) TCGA-CA-6717-01 X 123480572 123480572 G A SH2D1A Missense_Mutation p.G27D 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 123517953 123517953 G T TENM1 Missense_Mutation p.F2276L 0.29 deleterious(0) possibly_damaging(0.638) TCGA-CA-6717-01 X 123526139 123526139 G T TENM1 Silent p.I1817I 0.20 TCGA-CA-6717-01 X 123680799 123680799 A C TENM1 Missense_Mutation p.F859C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 X 125299314 125299314 G A DCAF12L2 Silent p.F198F 0.21 TCGA-CA-6717-01 X 12704256 12704256 T G FRMPD4 Missense_Mutation p.V205G 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 X 12708365 12708365 T C FRMPD4 Missense_Mutation p.F245L 0.17 deleterious(0.01) possibly_damaging(0.763) TCGA-CA-6717-01 X 128599855 128599855 C T SMARCA1 Missense_Mutation p.R928Q 0.19 deleterious(0.04) probably_damaging(0.942) TCGA-CA-6717-01 X 128691316 128691316 C T OCRL Missense_Mutation p.R85W 0.46 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 X 128701260 128701260 T G OCRL Silent p.A462A 0.35 TCGA-CA-6717-01 X 128948650 128948650 G A ZDHHC9 Silent p.I203I 0.37 TCGA-CA-6717-01 X 128957780 128957780 C T ZDHHC9 Missense_Mutation p.R121Q 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-CA-6717-01 X 12904183 12904183 C T TLR7 Nonsense_Mutation p.R186* 0.10 TCGA-CA-6717-01 X 12904727 12904727 C A TLR7 Missense_Mutation p.S367Y 0.43 deleterious(0) possibly_damaging(0.873) TCGA-CA-6717-01 X 129271592 129271592 G T AIFM1 Intron 0.39 TCGA-CA-6717-01 X 12937480 12937480 C A TLR8 Silent p.P107P 0.38 TCGA-CA-6717-01 X 12938349 12938349 C T TLR8 Missense_Mutation p.S397L 0.14 tolerated(0.21) benign(0.098) TCGA-CA-6717-01 X 12939505 12939505 T C TLR8 Silent p.D782D 0.44 TCGA-CA-6717-01 X 129493032 129493032 A G SLC25A14 Intron 0.15 TCGA-CA-6717-01 X 129629331 129629331 A C RP1-274L7.1 Intron 0.11 TCGA-CA-6717-01 X 130192416 130192416 G A ARHGAP36 Intron 0.17 TCGA-CA-6717-01 X 130218254 130218254 G A ARHGAP36 Silent p.Q207Q 0.14 TCGA-CA-6717-01 X 130409088 130409088 G T IGSF1 Missense_Mutation p.F1124L 0.55 deleterious(0.01) probably_damaging(0.995) TCGA-CA-6717-01 X 130419119 130419119 A G IGSF1 Intron 0.11 TCGA-CA-6717-01 X 13057944 13057944 C A FAM9C Nonsense_Mutation p.E141* 0.41 TCGA-CA-6717-01 X 131261900 131261900 A G FRMD7 5'UTR 0.45 TCGA-CA-6717-01 X 131513587 131513587 C T MBNL3 3'UTR 0.59 TCGA-CA-6717-01 X 132161009 132161009 C A USP26 Missense_Mutation p.D414Y 0.42 tolerated(0.09) benign(0.002) TCGA-CA-6717-01 X 133303464 133303464 C T MIR363 RNA 0.22 TCGA-CA-6717-01 X 133923250 133923250 A G FAM122B Intron 0.11 TCGA-CA-6717-01 X 134126430 134126430 C T SMIM10 3'UTR 0.37 TCGA-CA-6717-01 X 134690147 134690147 T G DDX26B Missense_Mutation p.L372V 0.42 deleterious(0) probably_damaging(0.931) TCGA-CA-6717-01 X 134715596 134715596 C A DDX26B 3'UTR 0.15 TCGA-CA-6717-01 X 134994995 134994995 C T SAGE1 Missense_Mutation p.A885V 0.16 tolerated(1) benign(0) TCGA-CA-6717-01 X 135290781 135290781 A G FHL1 Silent p.G223G 0.14 TCGA-CA-6717-01 X 135312621 135312621 A G MAP7D3 Missense_Mutation p.V558A 0.10 deleterious(0.03) benign(0.054) TCGA-CA-6717-01 X 135427826 135427826 C A GPR112 Missense_Mutation p.T654N 0.16 tolerated(0.11) benign(0.018) TCGA-CA-6717-01 X 135429270 135429270 A G GPR112 Silent p.T1135T 0.11 TCGA-CA-6717-01 X 135429713 135429713 C T GPR112 Missense_Mutation p.S1283F 0.36 tolerated(0.27) benign(0.001) TCGA-CA-6717-01 X 135431839 135431839 C A GPR112 Missense_Mutation p.L1992I 0.39 tolerated(0.42) benign(0.071) TCGA-CA-6717-01 X 135432564 135432564 G A GPR112 Silent p.S2233S 0.21 TCGA-CA-6717-01 X 135441504 135441504 T C GPR112 Missense_Mutation p.L2345S 0.14 deleterious(0) probably_damaging(0.997) TCGA-CA-6717-01 X 135593919 135593919 T G HTATSF1 Missense_Mutation p.L672R 0.39 deleterious_low_confidence(0) unknown(0) TCGA-CA-6717-01 X 135750296 135750296 T G ARHGEF6 Missense_Mutation p.E741D 0.11 tolerated(0.21) benign(0.033) TCGA-CA-6717-01 X 135758845 135758845 T G ARHGEF6 Missense_Mutation p.K628T 0.29 deleterious(0) probably_damaging(0.974) TCGA-CA-6717-01 X 135961521 135961521 T G RBMX Missense_Mutation p.K22N 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6717-01 X 13635878 13635878 C T EGFL6 Missense_Mutation p.L270F 0.11 tolerated(0.74) benign(0.033) TCGA-CA-6717-01 X 136649618 136649618 C T ZIC3 Silent p.I256I 0.36 TCGA-CA-6717-01 X 136649645 136649645 G A ZIC3 Silent p.K265K 0.43 TCGA-CA-6717-01 X 13780471 13780471 G A OFD1 Missense_Mutation p.R799Q 0.16 tolerated(1) benign(0.001) TCGA-CA-6717-01 X 138619265 138619265 G T F9 Missense_Mutation p.R62I 0.41 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 138708835 138708835 A C MCF2 Missense_Mutation p.S233R 0.36 tolerated(0.17) benign(0.008) TCGA-CA-6717-01 X 138813845 138813845 G A ATP11C Nonsense_Mutation p.R1123* 0.19 TCGA-CA-6717-01 X 138886704 138886704 G T ATP11C Missense_Mutation p.L164I 0.40 deleterious(0.02) benign(0.068) TCGA-CA-6717-01 X 138901537 138901537 C A ATP11C Missense_Mutation p.R69I 0.14 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 X 139040316 139040316 A C CXorf66 Missense_Mutation p.I50S 0.19 deleterious(0) benign(0.155) TCGA-CA-6717-01 X 139866080 139866080 C T CDR1 Missense_Mutation p.R151H 0.13 tolerated(0.57) benign(0.068) TCGA-CA-6717-01 X 140953275 140953275 G T MAGEC3 Missense_Mutation p.D48Y 0.43 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-CA-6717-01 X 140995445 140995445 C A MAGEC1 Missense_Mutation p.S752Y 0.24 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-CA-6717-01 X 140995709 140995709 C T MAGEC1 Missense_Mutation p.S840L 0.29 tolerated_low_confidence(0.35) unknown(0) TCGA-CA-6717-01 X 140995918 140995919 - A MAGEC1 Frame_Shift_Ins p.V912Gfs*44 0.34 TCGA-CA-6717-01 X 141291248 141291248 C A MAGEC2 Missense_Mutation p.D176Y 0.40 deleterious(0.01) probably_damaging(0.972) TCGA-CA-6717-01 X 142717102 142717102 C A SLITRK4 Missense_Mutation p.R608L 0.20 tolerated(0.31) benign(0.097) TCGA-CA-6717-01 X 142717191 142717191 G T SLITRK4 Silent p.I578I 0.16 TCGA-CA-6717-01 X 142718258 142718258 G A SLITRK4 Missense_Mutation p.P223S 0.45 tolerated(0.33) probably_damaging(0.996) TCGA-CA-6717-01 X 144337206 144337206 A C SPANXN1 Missense_Mutation p.N31H 0.53 tolerated(0.11) benign(0.193) TCGA-CA-6717-01 X 144337232 144337232 T G SPANXN1 Missense_Mutation p.S39R 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 X 144903989 144903989 A G SLITRK2 Missense_Mutation p.I16V 0.18 tolerated(0.24) benign(0.065) TCGA-CA-6717-01 X 144904052 144904052 G T SLITRK2 Nonsense_Mutation p.E37* 0.16 TCGA-CA-6717-01 X 144905326 144905326 A C SLITRK2 Missense_Mutation p.E461D 0.44 tolerated(0.22) benign(0.032) TCGA-CA-6717-01 X 144905618 144905618 G A SLITRK2 Missense_Mutation p.E559K 0.32 tolerated(0.93) benign(0.017) TCGA-CA-6717-01 X 144907284 144907284 G A SLITRK2 3'UTR 0.45 TCGA-CA-6717-01 X 144909131 144909131 C T TMEM257 5'UTR 0.35 TCGA-CA-6717-01 X 144909820 144909820 T G TMEM257 3'UTR 0.17 TCGA-CA-6717-01 X 14549187 14549188 - A GLRA2 Intron 0.27 TCGA-CA-6717-01 X 14748516 14748516 G A GLRA2 Missense_Mutation p.R423Q 0.43 deleterious(0.04) probably_damaging(0.942) TCGA-CA-6717-01 X 14863105 14863105 T C FANCB Silent p.Q600Q 0.10 TCGA-CA-6717-01 X 148693135 148693135 A G TMEM185A Missense_Mutation p.I17T 0.16 tolerated(0.06) probably_damaging(0.917) TCGA-CA-6717-01 X 149014305 149014305 T G MAGEA8 3'UTR 0.37 TCGA-CA-6717-01 X 14937800 14937800 C T MOSPD2 Missense_Mutation p.R476C 0.08 deleterious(0) possibly_damaging(0.677) TCGA-CA-6717-01 X 149899021 149899021 G T MTMR1 Nonsense_Mutation p.E220* 0.17 TCGA-CA-6717-01 X 151303662 151303662 A C MAGEA10 Missense_Mutation p.F144C 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 151303738 151303738 T C MAGEA10 Missense_Mutation p.T119A 0.52 tolerated(0.13) benign(0.241) TCGA-CA-6717-01 X 151336645 151336645 G A GABRA3 3'UTR 0.53 TCGA-CA-6717-01 X 151533039 151533039 T C GABRA3 Missense_Mutation p.I2V 0.32 tolerated_low_confidence(0.4) benign(0.031) TCGA-CA-6717-01 X 151806780 151806780 G A GABRQ Missense_Mutation p.E42K 0.23 tolerated(0.39) benign(0.005) TCGA-CA-6717-01 X 151820077 151820077 C A GABRQ Silent p.I330I 0.19 TCGA-CA-6717-01 X 151899776 151899776 G T MAGEA12 3'UTR 0.44 TCGA-CA-6717-01 X 151909178 151909178 G T CSAG1 Missense_Mutation p.K69N 0.46 deleterious_low_confidence(0.04) possibly_damaging(0.888) TCGA-CA-6717-01 X 151934686 151934686 C T MAGEA3 3'UTR 0.17 TCGA-CA-6717-01 X 152615798 152615798 C T ZNF275 3'UTR 0.10 TCGA-CA-6717-01 X 152734719 152734719 C T HAUS7 Missense_Mutation p.D47N 0.38 tolerated(0.05) possibly_damaging(0.842) TCGA-CA-6717-01 X 152771367 152771367 C T BGN Missense_Mutation p.A133V 0.15 deleterious(0.01) benign(0.037) TCGA-CA-6717-01 X 152861562 152861562 C T FAM58A Missense_Mutation p.A64T 0.37 tolerated(0.58) benign(0.008) TCGA-CA-6717-01 X 153052548 153052548 C A IDH3G Missense_Mutation p.Q245H 0.31 tolerated(0.12) benign(0.012) TCGA-CA-6717-01 X 153068962 153068962 T G PDZD4 Missense_Mutation p.N719T 0.55 tolerated(0.12) benign(0.011) TCGA-CA-6717-01 X 153132938 153132938 C A L1CAM Silent p.G670G 0.38 TCGA-CA-6717-01 X 15315749 15315749 A G ASB11 Missense_Mutation p.C106R 0.12 deleterious(0.01) probably_damaging(1) TCGA-CA-6717-01 X 153178206 153178206 C T ARHGAP4 Missense_Mutation p.S537N 0.24 tolerated(0.35) benign(0.002) TCGA-CA-6717-01 X 153184343 153184343 A G ARHGAP4 Silent p.H365H 0.17 TCGA-CA-6717-01 X 153216275 153216275 T G HCFC1 Missense_Mutation p.K1898Q 0.07 deleterious(0) probably_damaging(0.966) TCGA-CA-6717-01 X 153236355 153236355 T C HCFC1 5'UTR 0.23 TCGA-CA-6717-01 X 15333694 15333694 T G ASB11 Missense_Mutation p.N12H 0.26 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-CA-6717-01 X 153541032 153541032 C A TKTL1 Missense_Mutation p.L258I 0.40 tolerated(0.16) benign(0.031) TCGA-CA-6717-01 X 153543585 153543585 C T TKTL1 Silent p.V309V 0.29 TCGA-CA-6717-01 X 153609120 153609120 A C EMD Missense_Mutation p.D136A 0.39 tolerated(0.05) benign(0.114) TCGA-CA-6717-01 X 153662685 153662685 A G ATP6AP1 Silent p.Q272Q 0.13 TCGA-CA-6717-01 X 153924198 153924198 G A GAB3 Silent p.I508I 0.15 TCGA-CA-6717-01 X 154014599 154014599 A C MPP1 Missense_Mutation p.F186C 0.18 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 15403215 15403215 C A PIR Nonsense_Mutation p.E262* 0.53 TCGA-CA-6717-01 X 154124357 154124357 A C F8 Missense_Mutation p.L2142V 0.53 tolerated(0.07) possibly_damaging(0.81) TCGA-CA-6717-01 X 154157082 154157082 G T F8 Silent p.V1661V 0.40 TCGA-CA-6717-01 X 154158676 154158676 C A F8 Missense_Mutation p.R1130M 0.47 deleterious(0.01) possibly_damaging(0.497) TCGA-CA-6717-01 X 154197820 154197820 A G F8 Silent p.I265I 0.17 TCGA-CA-6717-01 X 155003588 155003588 C T SPRY3 Missense_Mutation p.R19C 0.17 deleterious(0.04) benign(0.002) TCGA-CA-6717-01 X 155006034 155006034 G T SPRY3 3'UTR 0.27 TCGA-CA-6717-01 X 155006213 155006213 G T SPRY3 3'UTR 0.15 TCGA-CA-6717-01 X 155009811 155009811 G T SPRY3 3'UTR 0.14 TCGA-CA-6717-01 X 155010196 155010196 T C SPRY3 3'UTR 0.15 TCGA-CA-6717-01 X 155010709 155010709 C A SPRY3 3'UTR 0.10 TCGA-CA-6717-01 X 155235010 155235010 C A IL9R Missense_Mutation p.P216H 0.09 deleterious(0) probably_damaging(0.993) TCGA-CA-6717-01 X 15540555 15540555 G T BMX Missense_Mutation p.K199N 0.19 tolerated(0.22) unknown(0) TCGA-CA-6717-01 X 15591491 15591491 G A ACE2 Nonsense_Mutation p.R514* 0.45 TCGA-CA-6717-01 X 15609903 15609903 G A ACE2 Silent p.V172V 0.36 TCGA-CA-6717-01 X 15619054 15619054 T G ACE2 5'UTR 0.23 TCGA-CA-6717-01 X 15768132 15768132 G T CA5B 5'UTR 0.22 TCGA-CA-6717-01 X 16170834 16170834 C T GRPR 3'UTR 0.33 TCGA-CA-6717-01 X 16836988 16836988 G T TXLNG Nonsense_Mutation p.E132* 0.22 TCGA-CA-6717-01 X 16876898 16876898 G A RBBP7 Missense_Mutation p.R172C 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6717-01 X 1712373 1712373 C T AKAP17A Silent p.I6I 0.10 TCGA-CA-6717-01 X 1755387 1755387 C A ASMT Missense_Mutation p.L282I 0.20 tolerated(0.17) possibly_damaging(0.668) TCGA-CA-6717-01 X 17745121 17745121 T G NHS Missense_Mutation p.N944K 0.54 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 X 17818977 17818977 G T RAI2 Missense_Mutation p.S385Y 0.33 deleterious(0) unknown(0) TCGA-CA-6717-01 X 18194111 18194111 G T BEND2 Missense_Mutation p.S578Y 0.16 tolerated(0.27) possibly_damaging(0.625) TCGA-CA-6717-01 X 18219961 18219961 A C BEND2 Nonsense_Mutation p.L336* 0.43 TCGA-CA-6717-01 X 18622080 18622080 A G CDKL5 Missense_Mutation p.I346V 0.22 tolerated_low_confidence(0.09) benign(0.031) TCGA-CA-6717-01 X 18775799 18775799 A C PPEF1 Missense_Mutation p.K151Q 0.38 tolerated(0.11) benign(0.344) TCGA-CA-6717-01 X 18959751 18959751 C A PHKA2 Nonsense_Mutation p.E254* 0.54 TCGA-CA-6717-01 X 19017365 19017365 A C GPR64 Missense_Mutation p.I788S 0.18 deleterious(0) probably_damaging(0.948) TCGA-CA-6717-01 X 19046320 19046320 T G GPR64 Missense_Mutation p.K132T 0.37 deleterious_low_confidence(0) benign(0.024) TCGA-CA-6717-01 X 19380860 19380860 C T MAP3K15 Silent p.S1225S 0.21 TCGA-CA-6717-01 X 19984319 19984319 T G CXorf23 Silent p.R164R 0.21 TCGA-CA-6717-01 X 20034355 20034355 G A MAP7D2 Missense_Mutation p.R501W 0.50 tolerated(0.07) unknown(0) TCGA-CA-6717-01 X 215979 215979 A G PLCXD1 Missense_Mutation p.N317D 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 21613497 21613497 C A CNKSR2 Missense_Mutation p.L654I 0.36 tolerated(0.09) benign(0.113) TCGA-CA-6717-01 X 21613500 21613500 G T CNKSR2 Missense_Mutation p.D655Y 0.15 deleterious(0) probably_damaging(0.918) TCGA-CA-6717-01 X 22239745 22239745 A C PHEX Missense_Mutation p.K595T 0.14 deleterious(0) possibly_damaging(0.83) TCGA-CA-6717-01 X 22291107 22291107 A T ZNF645 5'UTR 0.17 TCGA-CA-6717-01 X 23018206 23018206 C T DDX53 Missense_Mutation p.A11V 0.13 deleterious_low_confidence(0.01) benign(0.001) TCGA-CA-6717-01 X 23751325 23751325 T G ACOT9 Missense_Mutation p.K52T 0.13 tolerated(0.11) benign(0.018) TCGA-CA-6717-01 X 23945433 23945433 G A CXorf58 Silent p.P167P 0.14 TCGA-CA-6717-01 X 24229004 24229004 G A ZFX Silent p.S643S 0.23 TCGA-CA-6717-01 X 24721418 24721418 G A POLA1 Silent p.S67S 0.22 TCGA-CA-6717-01 X 24755801 24755801 A C POLA1 Missense_Mutation p.K655N 0.42 deleterious(0.02) probably_damaging(0.976) TCGA-CA-6717-01 X 26212720 26212720 A C MAGEB6 Missense_Mutation p.K253Q 0.55 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 X 27766485 27766485 C T DCAF8L2 Silent p.C491C 0.14 TCGA-CA-6717-01 X 27840755 27840755 G A MAGEB10 3'UTR 0.32 TCGA-CA-6717-01 X 29301120 29301120 C T IL1RAPL1 Nonsense_Mutation p.R50* 0.16 TCGA-CA-6717-01 X 2931158 2931158 T C ARSH Silent p.N95N 0.46 TCGA-CA-6717-01 X 29973677 29973677 T A IL1RAPL1 Missense_Mutation p.F611I 0.26 deleterious_low_confidence(0.03) benign(0.112) TCGA-CA-6717-01 X 3002591 3002591 G A ARSF Silent p.T238T 0.30 TCGA-CA-6717-01 X 30237842 30237842 T G MAGEB2 3'UTR 0.20 TCGA-CA-6717-01 X 30237975 30237975 A C MAGEB2 3'UTR 0.13 TCGA-CA-6717-01 X 30262032 30262032 C A MAGEB4 3'UTR 0.31 TCGA-CA-6717-01 X 30268780 30268780 T G MAGEB1 Missense_Mutation p.I57S 0.11 tolerated(0.38) benign(0.03) TCGA-CA-6717-01 X 30269790 30269790 G T MAGEB1 3'UTR 0.09 TCGA-CA-6717-01 X 30326563 30326563 G A NR0B1 Silent p.F306F 0.26 TCGA-CA-6717-01 X 30327089 30327089 C T NR0B1 Missense_Mutation p.R131H 0.26 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CA-6717-01 X 31196870 31196870 A C DMD Missense_Mutation p.F3380C 0.58 possibly_damaging(0.878) TCGA-CA-6717-01 X 31227748 31227748 G A DMD Missense_Mutation p.P3144S 0.13 possibly_damaging(0.511) TCGA-CA-6717-01 X 31241217 31241217 A C DMD Missense_Mutation p.F3103C 0.32 possibly_damaging(0.805) TCGA-CA-6717-01 X 32361361 32361361 G T DMD Missense_Mutation p.H1877N 0.16 benign(0.216) TCGA-CA-6717-01 X 3239909 3239909 A G MXRA5 Missense_Mutation p.S1273P 0.24 tolerated(0.42) benign(0.005) TCGA-CA-6717-01 X 32466724 32466724 G A DMD Missense_Mutation p.A1212V 0.23 benign(0.039) TCGA-CA-6717-01 X 32482768 32482768 G T DMD Missense_Mutation p.L1071M 0.36 probably_damaging(0.981) TCGA-CA-6717-01 X 32613954 32613954 T C DMD Missense_Mutation p.N508D 0.32 possibly_damaging(0.828) TCGA-CA-6717-01 X 34961217 34961217 G A FAM47B Missense_Mutation p.R90H 0.19 tolerated(0.06) benign(0.005) TCGA-CA-6717-01 X 35937929 35937929 A C CXorf22 Missense_Mutation p.K5Q 0.33 tolerated_low_confidence(0.29) benign(0) TCGA-CA-6717-01 X 35988930 35988930 T G CXorf22 Missense_Mutation p.D620E 0.17 tolerated(0.71) benign(0.261) TCGA-CA-6717-01 X 35989995 35989995 G T CXorf22 Nonsense_Mutation p.G723* 0.16 TCGA-CA-6717-01 X 36007468 36007468 G T CXorf22 Nonsense_Mutation p.E916* 0.47 TCGA-CA-6717-01 X 36065053 36065053 A G CHDC2 5'UTR 0.16 TCGA-CA-6717-01 X 36379445 36379445 A G CXorf30 Missense_Mutation p.E397G 0.14 tolerated(0.48) benign(0.002) TCGA-CA-6717-01 X 36397538 36397538 G T CXorf30 Nonsense_Mutation p.E533* 0.22 TCGA-CA-6717-01 X 37312851 37312851 C T PRRG1 Missense_Mutation p.P212S 0.50 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CA-6717-01 X 37587522 37587522 C A XK Missense_Mutation p.S381Y 0.20 deleterious(0.01) possibly_damaging(0.726) TCGA-CA-6717-01 X 37652919 37652919 G A CYBB Silent p.A113A 0.37 TCGA-CA-6717-01 X 37893255 37893255 G T SYTL5 Missense_Mutation p.R38I 0.39 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 X 37935843 37935843 C T SYTL5 Missense_Mutation p.S193L 0.17 tolerated(0.27) benign(0.009) TCGA-CA-6717-01 X 38260563 38260563 G A OTC Missense_Mutation p.R141Q 0.43 deleterious(0) probably_damaging(0.981) TCGA-CA-6717-01 X 39911440 39911440 C T BCOR Silent p.T1730T 0.27 TCGA-CA-6717-01 X 40456788 40456788 A G ATP6AP2 Missense_Mutation p.M136V 0.25 tolerated(0.36) benign(0.016) TCGA-CA-6717-01 X 40508921 40508921 G A MED14 3'UTR 0.36 TCGA-CA-6717-01 X 40539309 40539309 C A MED14 Missense_Mutation p.R896I 0.10 deleterious(0.01) possibly_damaging(0.898) TCGA-CA-6717-01 X 40571469 40571469 C T MED14 Silent p.E286E 0.41 TCGA-CA-6717-01 X 41201800 41201800 A G DDX3X Missense_Mutation p.R113G 0.39 tolerated(0.26) benign(0.079) TCGA-CA-6717-01 X 41555647 41555647 A C GPR34 Missense_Mutation p.K254T 0.16 deleterious(0.03) benign(0.158) TCGA-CA-6717-01 X 41555830 41555830 T G GPR34 Missense_Mutation p.L315R 0.45 deleterious(0) probably_damaging(0.954) TCGA-CA-6717-01 X 44023210 44023210 C A EFHC2 Missense_Mutation p.K702N 0.19 tolerated(0.36) benign(0.004) TCGA-CA-6717-01 X 44109556 44109556 C A EFHC2 Nonsense_Mutation p.E248* 0.24 TCGA-CA-6717-01 X 45017102 45017102 G A CXorf36 Missense_Mutation p.S177L 0.32 deleterious(0) possibly_damaging(0.642) TCGA-CA-6717-01 X 46332663 46332663 G T KRBOX4 3'UTR 0.28 TCGA-CA-6717-01 X 46359975 46359975 C A ZNF674 Missense_Mutation p.R350I 0.33 tolerated(0.06) benign(0.024) TCGA-CA-6717-01 X 46360548 46360548 A G ZNF674 Missense_Mutation p.F159S 0.20 tolerated(0.29) benign(0.015) TCGA-CA-6717-01 X 47064783 47064783 G T UBA1 Intron 0.19 TCGA-CA-6717-01 X 47085738 47085738 C T CDK16 Nonsense_Mutation p.R359* 0.33 TCGA-CA-6717-01 X 47230119 47230119 G T ZNF157 Nonsense_Mutation p.E18* 0.33 TCGA-CA-6717-01 X 47424197 47424197 C T ARAF Nonsense_Mutation p.R68* 0.38 TCGA-CA-6717-01 X 47489216 47489216 G A CFP Nonsense_Mutation p.R10* 0.42 TCGA-CA-6717-01 X 47775549 47775549 G T ZNF81 Nonsense_Mutation p.E502* 0.20 TCGA-CA-6717-01 X 47775736 47775736 T C ZNF81 Missense_Mutation p.I564T 0.23 tolerated(0.31) possibly_damaging(0.507) TCGA-CA-6717-01 X 47836641 47836641 C T ZNF182 Missense_Mutation p.R282Q 0.15 deleterious(0.03) probably_damaging(0.994) TCGA-CA-6717-01 X 47837067 47837067 A G ZNF182 Missense_Mutation p.F140S 0.45 deleterious(0.02) benign(0.191) TCGA-CA-6717-01 X 47918731 47918731 C A ZNF630 Missense_Mutation p.R367I 0.11 deleterious(0) benign(0.195) TCGA-CA-6717-01 X 48244872 48244872 G A SSX4 Missense_Mutation p.R88Q 0.15 tolerated(0.68) benign(0.098) TCGA-CA-6717-01 X 48269438 48269438 C T SSX4B Missense_Mutation p.R88Q 0.21 tolerated(0.68) benign(0.098) TCGA-CA-6717-01 X 48781142 48781142 G A OTUD5 Missense_Mutation p.S489L 0.57 deleterious(0.02) benign(0.006) TCGA-CA-6717-01 X 48976076 48976076 A G GPKOW Missense_Mutation p.I183T 0.18 deleterious(0) probably_damaging(0.999) TCGA-CA-6717-01 X 49054188 49054188 G A SYP Silent p.F71F 0.31 TCGA-CA-6717-01 X 49067863 49067863 G A CACNA1F Silent p.F1404F 0.32 TCGA-CA-6717-01 X 49173764 49173764 G T GAGE10 Nonsense_Mutation p.E109* 0.17 TCGA-CA-6717-01 X 49957451 49957451 A C AKAP4 Missense_Mutation p.L638R 0.44 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 49958922 49958922 G T AKAP4 Missense_Mutation p.H148N 0.22 tolerated(0.33) benign(0.001) TCGA-CA-6717-01 X 50051689 50051689 A C CCNB3 Missense_Mutation p.K174Q 0.16 tolerated(0.11) benign(0.062) TCGA-CA-6717-01 X 50052016 50052016 T C CCNB3 Silent p.L283L 0.18 TCGA-CA-6717-01 X 50167350 50167350 A G DGKK RNA 0.17 TCGA-CA-6717-01 X 50653955 50653955 A C BMP15 Silent p.R58R 0.29 TCGA-CA-6717-01 X 52681383 52681383 G - SSX7 Frame_Shift_Del p.L67Sfs*33 0.20 TCGA-CA-6717-01 X 52891590 52891590 T G XAGE3 3'UTR 0.18 TCGA-CA-6717-01 X 52896284 52896284 C T XAGE3 Intron 0.41 TCGA-CA-6717-01 X 53111973 53111973 A C TSPYL2 Missense_Mutation p.D98A 0.47 tolerated(0.11) benign(0.437) TCGA-CA-6717-01 X 53426521 53426521 T G SMC1A Missense_Mutation p.K851T 0.27 tolerated(0.4) benign(0.026) TCGA-CA-6717-01 X 53432294 53432294 C A SMC1A Missense_Mutation p.Q647H 0.44 tolerated(0.14) probably_damaging(0.99) TCGA-CA-6717-01 X 53969715 53969715 G A PHF8 Intron 0.21 TCGA-CA-6717-01 X 54048789 54048789 G A PHF8 Missense_Mutation p.R102C 0.18 deleterious(0) benign(0.37) TCGA-CA-6717-01 X 54275179 54275179 T C WNK3 Missense_Mutation p.K1201R 0.13 tolerated(0.28) benign(0.027) TCGA-CA-6717-01 X 54277853 54277853 A G WNK3 Missense_Mutation p.S852P 0.42 tolerated(0.39) benign(0.005) TCGA-CA-6717-01 X 54823489 54823489 G T ITIH6 Missense_Mutation p.S48Y 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6717-01 X 54952046 54952046 G T TRO Nonsense_Mutation p.E503* 0.19 TCGA-CA-6717-01 X 55043987 55043987 T G ALAS2 Missense_Mutation p.K312T 0.33 tolerated(0.05) benign(0.038) TCGA-CA-6717-01 X 55043989 55043989 C A ALAS2 Missense_Mutation p.K311N 0.34 deleterious(0.01) benign(0.005) TCGA-CA-6717-01 X 55051258 55051258 G A ALAS2 Missense_Mutation p.A66V 0.21 tolerated(0.4) benign(0.009) TCGA-CA-6717-01 X 55249164 55249164 A G PAGE5 Missense_Mutation p.K121E 0.12 tolerated(0.19) benign(0.057) TCGA-CA-6717-01 X 55782317 55782317 G T RRAGB Missense_Mutation p.R288I 0.12 deleterious(0) probably_damaging(0.995) TCGA-CA-6717-01 X 56593356 56593356 A C UBQLN2 3'UTR 0.50 TCGA-CA-6717-01 X 57146213 57146213 A C SPIN2B 3'UTR 0.18 TCGA-CA-6717-01 X 57162468 57162468 A G SPIN2A Missense_Mutation p.I188T 0.24 tolerated(0.06) benign(0.43) TCGA-CA-6717-01 X 57934489 57934489 A C ZXDA Missense_Mutation p.L789R 0.22 deleterious(0) possibly_damaging(0.665) TCGA-CA-6717-01 X 591882 591882 G T SHOX Nonsense_Mutation p.E84* 0.12 TCGA-CA-6717-01 X 63410342 63410342 C T AMER1 Missense_Mutation p.R942Q 0.19 tolerated(0.16) benign(0.025) TCGA-CA-6717-01 X 63412020 63412020 C A AMER1 Nonsense_Mutation p.E383* 0.48 TCGA-CA-6717-01 X 64754414 64754414 T G LAS1L Missense_Mutation p.D61A 0.21 tolerated(0.14) benign(0.158) TCGA-CA-6717-01 X 64959826 64959826 A G MSN 3'UTR 0.18 TCGA-CA-6717-01 X 65242111 65242111 G T VSIG4 Silent p.V398V 0.12 TCGA-CA-6717-01 X 65819318 65819318 C A EDA2R 3'Flank 0.13 TCGA-CA-6717-01 X 65819382 65819382 C T EDA2R Missense_Mutation p.E301K 0.36 deleterious(0.02) benign(0.343) TCGA-CA-6717-01 X 66765082 66765082 G A AR Missense_Mutation p.E32K 0.21 deleterious_low_confidence(0) possibly_damaging(0.646) TCGA-CA-6717-01 X 66942788 66942788 T G AR Missense_Mutation p.F857V 0.12 deleterious(0) probably_damaging(0.998) TCGA-CA-6717-01 X 67942453 67942453 C T STARD8 Missense_Mutation p.P922S 0.46 tolerated(0.88) benign(0.084) TCGA-CA-6717-01 X 68749691 68749691 T C FAM155B Silent p.V437V 0.22 TCGA-CA-6717-01 X 69457007 69457007 C A AWAT1 Missense_Mutation p.F123L 0.27 deleterious(0.01) possibly_damaging(0.556) TCGA-CA-6717-01 X 69501024 69501024 G A ARR3 Intron 0.30 TCGA-CA-6717-01 X 69504556 69504556 C A RAB41 3'UTR 0.54 TCGA-CA-6717-01 X 69672498 69672498 C T DLG3 Intron 0.38 TCGA-CA-6717-01 X 6995464 6995464 G A HDHD1 Missense_Mutation p.R126W 0.31 deleterious(0.02) benign(0.148) TCGA-CA-6717-01 X 70321423 70321423 C A FOXO4 Missense_Mutation p.A448D 0.17 tolerated(0.54) benign(0.031) TCGA-CA-6717-01 X 70330360 70330360 T G IL2RG Missense_Mutation p.N150H 0.17 deleterious(0.01) probably_damaging(0.965) TCGA-CA-6717-01 X 70362053 70362053 A G MED12 Missense_Mutation p.I2173M 0.23 unknown(0) TCGA-CA-6717-01 X 70367945 70367945 G A NLGN3 Missense_Mutation p.E116K 0.14 tolerated(0.51) possibly_damaging(0.746) TCGA-CA-6717-01 X 70384125 70384125 C T NLGN3 Missense_Mutation p.S287L 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6717-01 X 70510502 70510502 A C NONO Missense_Mutation p.K5N 0.14 deleterious_low_confidence(0) benign(0.19) TCGA-CA-6717-01 X 70612786 70612786 G A TAF1 Missense_Mutation p.R1018H 0.48 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 X 70621583 70621583 T G TAF1 Missense_Mutation p.I1351S 0.36 deleterious(0) possibly_damaging(0.758) TCGA-CA-6717-01 X 70782732 70782732 G A OGT Silent p.A671A 0.32 TCGA-CA-6717-01 X 71359689 71359689 T G NHSL2 Missense_Mutation p.F764C 0.35 tolerated(0.08) benign(0.382) TCGA-CA-6717-01 X 71362117 71362117 T G NHSL2 Missense_Mutation p.L1087V 0.42 tolerated(0.91) benign(0.005) TCGA-CA-6717-01 X 71494421 71494421 T G RPS4X Intron 0.21 TCGA-CA-6717-01 X 71549612 71549612 A C HDAC8 3'UTR 0.24 TCGA-CA-6717-01 X 71715050 71715050 A C HDAC8 Missense_Mutation p.F169C 0.33 deleterious(0) probably_damaging(0.99) TCGA-CA-6717-01 X 71823002 71823002 G T PHKA1 Missense_Mutation p.L962I 0.40 deleterious(0.01) possibly_damaging(0.882) TCGA-CA-6717-01 X 71872499 71872499 G A PHKA1 Silent p.V380V 0.47 TCGA-CA-6717-01 X 72224245 72224245 G A PABPC1L2B 3'UTR 0.11 TCGA-CA-6717-01 X 72298075 72298075 A G PABPC1L2A 3'UTR 0.14 TCGA-CA-6717-01 X 72434205 72434205 C T NAP1L2 Missense_Mutation p.G42R 0.29 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-CA-6717-01 X 74636993 74636993 G T ZDHHC15 Missense_Mutation p.S299Y 0.26 tolerated(0.12) benign(0.321) TCGA-CA-6717-01 X 75003308 75003308 C A MAGEE2 3'UTR 0.37 TCGA-CA-6717-01 X 76845306 76845306 T G ATRX Missense_Mutation p.K2072T 0.25 possibly_damaging(0.573) TCGA-CA-6717-01 X 76938056 76938056 C A ATRX Missense_Mutation p.D898Y 0.36 possibly_damaging(0.906) TCGA-CA-6717-01 X 76938539 76938539 T C ATRX Missense_Mutation p.I737V 0.54 benign(0.001) TCGA-CA-6717-01 X 76952109 76952109 T G ATRX Missense_Mutation p.N109T 0.39 possibly_damaging(0.501) TCGA-CA-6717-01 X 77284787 77284787 G A ATP7A Missense_Mutation p.R986Q 0.43 tolerated(0.24) probably_damaging(1) TCGA-CA-6717-01 X 77528399 77528399 G T CYSLTR1 Missense_Mutation p.S282Y 0.24 deleterious(0.02) possibly_damaging(0.793) TCGA-CA-6717-01 X 77528520 77528520 A C CYSLTR1 Missense_Mutation p.F242V 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 X 77912625 77912625 G T ZCCHC5 Silent p.I431I 0.21 TCGA-CA-6717-01 X 77913128 77913128 C T ZCCHC5 Missense_Mutation p.V264I 0.25 tolerated(0.1) possibly_damaging(0.473) TCGA-CA-6717-01 X 78011371 78011371 G T LPAR4 Missense_Mutation p.K335N 0.19 tolerated_low_confidence(0.1) benign(0.104) TCGA-CA-6717-01 X 78011465 78011465 G T LPAR4 Nonsense_Mutation p.E367* 0.45 TCGA-CA-6717-01 X 79286246 79286246 C A TBX22 Missense_Mutation p.S400Y 0.25 tolerated(0.56) benign(0.235) TCGA-CA-6717-01 X 79698342 79698342 G T FAM46D Missense_Mutation p.D102Y 0.50 deleterious(0) probably_damaging(0.964) TCGA-CA-6717-01 X 79984301 79984301 G T BRWD3 Missense_Mutation p.L446I 0.20 tolerated(0.17) benign(0.011) TCGA-CA-6717-01 X 83127912 83127912 C T CYLC1 Silent p.L66L 0.45 TCGA-CA-6717-01 X 83128541 83128541 T G CYLC1 Missense_Mutation p.N275K 0.21 tolerated(1) unknown(0) TCGA-CA-6717-01 X 83128645 83128645 C T CYLC1 Missense_Mutation p.S310L 0.41 tolerated(0.24) unknown(0) TCGA-CA-6717-01 X 83129164 83129164 C A CYLC1 Missense_Mutation p.S483Y 0.15 deleterious(0) probably_damaging(0.991) TCGA-CA-6717-01 X 83129182 83129182 A G CYLC1 Missense_Mutation p.D489G 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-CA-6717-01 X 83361439 83361439 A G RPS6KA6 Silent p.G433G 0.16 TCGA-CA-6717-01 X 83588786 83588786 T C HDX Missense_Mutation p.N602S 0.20 tolerated(0.62) benign(0.001) TCGA-CA-6717-01 X 84362785 84362785 C T SATL1 Missense_Mutation p.R397K 0.45 tolerated(0.72) possibly_damaging(0.455) TCGA-CA-6717-01 X 8501023 8501023 C A KAL1 3'UTR 0.44 TCGA-CA-6717-01 X 8522063 8522063 C T KAL1 Silent p.P428P 0.31 TCGA-CA-6717-01 X 89177169 89177169 G T TGIF2LX Missense_Mutation p.D29Y 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-CA-6717-01 X 89177301 89177301 C T TGIF2LX Missense_Mutation p.R73W 0.12 deleterious(0) probably_damaging(0.996) TCGA-CA-6717-01 X 89177409 89177409 C A TGIF2LX Missense_Mutation p.L109I 0.43 deleterious(0.01) probably_damaging(0.952) TCGA-CA-6717-01 X 8995964 8995964 C A FAM9B Missense_Mutation p.S146I 0.20 tolerated(1) probably_damaging(0.995) TCGA-CA-6717-01 X 8998387 8998387 T G FAM9B Missense_Mutation p.K66Q 0.48 deleterious(0.02) benign(0.151) TCGA-CA-6717-01 X 90690828 90690828 T G PABPC5 Missense_Mutation p.I84M 0.29 deleterious(0.02) probably_damaging(0.967) TCGA-CA-6717-01 X 90691946 90691946 G T PABPC5 3'UTR 0.15 TCGA-CA-6717-01 X 90692306 90692306 C T PABPC5 3'UTR 0.21 TCGA-CA-6717-01 X 90692449 90692449 G A PABPC5 3'UTR 0.43 TCGA-CA-6717-01 X 90692682 90692682 A C PABPC5 3'UTR 0.16 TCGA-CA-6717-01 X 90693327 90693327 C A PABPC5 3'UTR 0.20 TCGA-CA-6717-01 X 91090730 91090730 G A PCDH11X Missense_Mutation p.R76Q 0.20 deleterious(0.02) probably_damaging(0.948) TCGA-CA-6717-01 X 91131989 91131989 G T PCDH11X Missense_Mutation p.K250N 0.41 tolerated(0.14) benign(0.402) TCGA-CA-6717-01 X 91138018 91138018 G T PCDH11X Intron 0.16 TCGA-CA-6717-01 X 91873853 91873853 G A PCDH11X Missense_Mutation p.V1320I 0.20 deleterious_low_confidence(0.01) benign(0.015) TCGA-CA-6717-01 X 92926766 92926766 A C NAP1L3 3'UTR 0.09 TCGA-CA-6717-01 X 92926798 92926798 C A NAP1L3 Missense_Mutation p.K502N 0.26 deleterious_low_confidence(0) benign(0.001) TCGA-CA-6717-01 X 92927314 92927314 C A NAP1L3 Missense_Mutation p.Q330H 0.08 deleterious(0) probably_damaging(0.934) TCGA-CA-6717-01 X 92928367 92928367 C T NAP1L3 5'UTR 0.10 TCGA-CA-6717-01 X 92964553 92964553 G T FAM133A Missense_Mutation p.K45N 0.13 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-CA-6717-01 X 92965556 92965556 G T FAM133A 3'UTR 0.15 TCGA-CA-6717-01 X 92966192 92966192 A T FAM133A 3'UTR 0.15 TCGA-CA-6717-01 X 96171575 96171575 T C DIAPH2 Splice_Site p.X290_splice 0.10 TCGA-CA-6717-01 X 96204003 96204003 G T DIAPH2 Nonsense_Mutation p.E527* 0.18 TCGA-CA-6717-01 X 96327971 96327971 G T DIAPH2 Missense_Mutation p.K694N 0.46 deleterious(0.03) benign(0.173) TCGA-CA-6717-01 X 99662008 99662008 C T PCDH19 Missense_Mutation p.E530K 0.11 deleterious(0.02) probably_damaging(0.95) TCGA-CA-6717-01 X 99941136 99941136 C A SYTL4 Nonsense_Mutation p.E434* 0.38 TCGA-CA-6717-01 X 99945569 99945569 T G SYTL4 Missense_Mutation p.Q236H 0.15 tolerated(0.15) benign(0.002) TCGA-CA-6717-01 Y 14848048 14848048 A C USP9Y Missense_Mutation p.K297T 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6717-01 Y 14898677 14898677 C T USP9Y Nonsense_Mutation p.R1169* 0.36 TCGA-CA-6717-01 Y 15362959 15362959 A C UTY Missense_Mutation p.F1319V 0.16 tolerated(0.13) probably_damaging(0.999) TCGA-CA-6717-01 Y 15478237 15478237 T G UTY Missense_Mutation p.K259T 0.17 deleterious(0.02) possibly_damaging(0.517) TCGA-CA-6717-01 Y 15817112 15817112 A G TMSB4Y Silent p.E36E 0.17 TCGA-CA-6717-01 Y 16734146 16734146 C G NLGN4Y Missense_Mutation p.N49K 0.44 tolerated(0.16) benign(0.024) TCGA-CA-6717-01 Y 21765704 21765704 T G TXLNG2P RNA 0.23 TCGA-CA-6717-01 Y 2655338 2655338 C T SRY Missense_Mutation p.E103K 0.20 deleterious(0) probably_damaging(0.984) TCGA-CA-6717-01 Y 2843629 2843629 C T ZFY Missense_Mutation p.R288C 0.16 tolerated(0.05) probably_damaging(0.927) TCGA-CA-6717-01 Y 2843689 2843689 G T ZFY Missense_Mutation p.D308Y 0.35 deleterious(0) possibly_damaging(0.836) TCGA-CA-6717-01 Y 2847973 2847973 G A ZFY Missense_Mutation p.R782Q 0.22 deleterious(0.05) possibly_damaging(0.867) TCGA-CA-6717-01 Y 3447794 3447794 G T TGIF2LY Missense_Mutation p.R170I 0.15 benign(0.001) TCGA-CA-6717-01 Y 4924836 4924836 T G PCDH11Y 5'UTR 0.45 TCGA-CA-6717-01 Y 4925234 4925234 G T PCDH11Y Missense_Mutation p.D124Y 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6717-01 Y 4967205 4967205 C A PCDH11Y Missense_Mutation p.P529H 0.17 tolerated(0.19) benign(0.002) TCGA-CA-6717-01 Y 4967293 4967293 G T PCDH11Y Missense_Mutation p.K558N 0.40 tolerated(0.53) benign(0.012) TCGA-CA-6717-01 Y 6734098 6734098 C A AMELY 3'UTR 0.15 TCGA-CA-6718-01 10 100193729 100193729 C T HPS1 Intron 0.23 TCGA-CA-6718-01 10 100481570 100481570 C T HPSE2 Missense_Mutation p.R267Q 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-CA-6718-01 10 101567212 101567212 G T ABCC2 Missense_Mutation p.K534N 0.40 tolerated(0.07) benign(0.367) TCGA-CA-6718-01 10 101716082 101716082 C T DNMBP Silent p.G383G 0.18 TCGA-CA-6718-01 10 101923814 101923814 T C ERLIN1 Missense_Mutation p.K201R 0.32 tolerated(0.5) benign(0.029) TCGA-CA-6718-01 10 101964370 101964370 T C CHUK Missense_Mutation p.N467S 0.28 tolerated(0.05) possibly_damaging(0.577) TCGA-CA-6718-01 10 102020727 102020727 C A CWF19L1 Missense_Mutation p.K61N 0.23 tolerated(0.05) benign(0.197) TCGA-CA-6718-01 10 102296239 102296239 G T HIF1AN Missense_Mutation p.E83D 0.13 tolerated(0.06) benign(0.008) TCGA-CA-6718-01 10 102987497 102987497 G A LBX1 Nonsense_Mutation p.R126* 0.37 TCGA-CA-6718-01 10 103908645 103908645 C A PPRC1 Missense_Mutation p.F1563L 0.29 deleterious(0) benign(0.418) TCGA-CA-6718-01 10 104123545 104123545 A C GBF1 Missense_Mutation p.N698T 0.12 tolerated(0.53) benign(0.009) TCGA-CA-6718-01 10 104140951 104140951 C T GBF1 Silent p.G1746G 0.15 TCGA-CA-6718-01 10 104591369 104591369 C T CYP17A1 Splice_Site p.X380_splice 0.27 TCGA-CA-6718-01 10 105138096 105138096 G A TAF5 Missense_Mutation p.R301Q 0.29 tolerated(0.05) benign(0.43) TCGA-CA-6718-01 10 105928530 105928530 G A WDR96 Missense_Mutation p.S888L 0.17 deleterious(0) possibly_damaging(0.723) TCGA-CA-6718-01 10 106039209 106039209 G T GSTO2 Nonsense_Mutation p.E150* 0.28 TCGA-CA-6718-01 10 106118126 106118126 G T CCDC147 Nonsense_Mutation p.E13* 0.18 TCGA-CA-6718-01 10 106118193 106118193 G T CCDC147 Missense_Mutation p.S35I 0.30 deleterious(0) possibly_damaging(0.642) TCGA-CA-6718-01 10 106121858 106121858 G T CCDC147 Silent p.L123L 0.24 TCGA-CA-6718-01 10 106130713 106130713 G T CCDC147 Nonsense_Mutation p.E331* 0.27 TCGA-CA-6718-01 10 112337595 112337595 C G SMC3 Missense_Mutation p.I91M 0.31 deleterious(0) probably_damaging(0.93) TCGA-CA-6718-01 10 112356171 112356171 A G SMC3 Missense_Mutation p.H660R 0.24 tolerated(1) benign(0.001) TCGA-CA-6718-01 10 112724555 112724555 A C SHOC2 Missense_Mutation p.N147H 0.33 tolerated(0.11) possibly_damaging(0.748) TCGA-CA-6718-01 10 113915594 113915594 T G GPAM Intron 0.27 TCGA-CA-6718-01 10 114203357 114203357 G T ZDHHC6 Missense_Mutation p.S92Y 0.24 deleterious(0) benign(0.024) TCGA-CA-6718-01 10 114710434 114710434 A C TCF7L2 5'UTR 0.33 TCGA-CA-6718-01 10 115922843 115922843 C T C10orf118 Missense_Mutation p.R62Q 0.33 tolerated_low_confidence(0.67) benign(0.001) TCGA-CA-6718-01 10 118202678 118202678 A G PNLIPRP3 Missense_Mutation p.M106V 0.15 deleterious(0.02) benign(0.198) TCGA-CA-6718-01 10 118386491 118386491 C A PNLIPRP2 Missense_Mutation p.F149L 0.19 deleterious(0.04) benign(0.002) TCGA-CA-6718-01 10 118628186 118628186 A C ENO4 Missense_Mutation p.K64T 0.34 deleterious(0) benign(0.004) TCGA-CA-6718-01 10 118891595 118891595 C T VAX1 3'Flank 0.39 TCGA-CA-6718-01 10 119799780 119799780 A G RAB11FIP2 Missense_Mutation p.L217S 0.11 tolerated(0.95) probably_damaging(0.996) TCGA-CA-6718-01 10 120488828 120488828 C T CACUL1 Silent p.E192E 0.23 TCGA-CA-6718-01 10 120879916 120879916 G T FAM45A Missense_Mutation p.R182I 0.27 deleterious(0) possibly_damaging(0.892) TCGA-CA-6718-01 10 120892056 120892056 G A FAM45A Missense_Mutation p.E278K 0.20 tolerated(0.07) benign(0.031) TCGA-CA-6718-01 10 120896242 120896242 A C FAM45A 3'UTR 0.21 TCGA-CA-6718-01 10 121341497 121341497 T C TIAL1 Missense_Mutation p.D120G 0.40 deleterious(0) possibly_damaging(0.891) TCGA-CA-6718-01 10 12139894 12139894 A G DHTKD1 Missense_Mutation p.T524A 0.17 deleterious(0) probably_damaging(0.986) TCGA-CA-6718-01 10 121692642 121692642 G T SEC23IP Nonsense_Mutation p.E962* 0.12 TCGA-CA-6718-01 10 123719087 123719087 T G NSMCE4A Missense_Mutation p.N338H 0.24 deleterious(0.04) possibly_damaging(0.814) TCGA-CA-6718-01 10 124214527 124214527 A G ARMS2 Missense_Mutation p.H95R 0.38 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-CA-6718-01 10 124336034 124336034 G T DMBT1 Missense_Mutation p.D135Y 0.42 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 10 124742368 124742368 A C PSTK Missense_Mutation p.E112D 0.15 tolerated(0.06) benign(0.276) TCGA-CA-6718-01 10 124793972 124793972 G A ACADSB Missense_Mutation p.G48E 0.16 tolerated(0.23) benign(0.013) TCGA-CA-6718-01 10 124800734 124800734 T G ACADSB Missense_Mutation p.F174V 0.12 deleterious(0.02) possibly_damaging(0.596) TCGA-CA-6718-01 10 125780896 125780896 G A CHST15 Missense_Mutation p.S408L 0.31 deleterious(0.02) benign(0.046) TCGA-CA-6718-01 10 12595237 12595237 G A CAMK1D Missense_Mutation p.E36K 0.20 tolerated(0.08) benign(0.033) TCGA-CA-6718-01 10 126186655 126186655 T G LHPP Missense_Mutation p.F194L 0.08 deleterious(0.04) possibly_damaging(0.826) TCGA-CA-6718-01 10 127460847 127460847 G A MMP21 Missense_Mutation p.P307S 0.26 deleterious(0.04) probably_damaging(0.954) TCGA-CA-6718-01 10 127705756 127705756 A C ADAM12 3'UTR 0.21 TCGA-CA-6718-01 10 128150152 128150152 C A C10orf90 Missense_Mutation p.D513Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 10 129905492 129905492 T C MKI67 Missense_Mutation p.M1538V 0.27 tolerated(0.65) benign(0.219) TCGA-CA-6718-01 10 129905819 129905819 T C MKI67 Missense_Mutation p.K1429E 0.25 tolerated(0.39) benign(0.034) TCGA-CA-6718-01 10 131943557 131943557 G T GLRX3 Nonsense_Mutation p.E59* 0.20 TCGA-CA-6718-01 10 13323006 13323006 G T PHYH Missense_Mutation p.F311L 0.26 tolerated(0.81) benign(0) TCGA-CA-6718-01 10 13341462 13341462 C T PHYH Intron 0.32 TCGA-CA-6718-01 10 133980526 133980526 C A JAKMIP3 Missense_Mutation p.L842I 0.30 tolerated_low_confidence(0.08) unknown(0) TCGA-CA-6718-01 10 13481104 13481104 A T BEND7 3'UTR 0.10 TCGA-CA-6718-01 10 135166036 135166036 A C PRAP1 3'UTR 0.54 TCGA-CA-6718-01 10 16547150 16547150 G T PTER Missense_Mutation p.R277I 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 10 16941042 16941042 A C CUBN Missense_Mutation p.F2851V 0.28 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 10 16980985 16980985 T G CUBN Missense_Mutation p.N1904H 0.13 tolerated(0.05) benign(0.292) TCGA-CA-6718-01 10 16996491 16996491 C A CUBN Missense_Mutation p.E1584D 0.37 tolerated(0.12) benign(0.02) TCGA-CA-6718-01 10 17157584 17157584 T C CUBN Silent p.P202P 0.22 TCGA-CA-6718-01 10 17165674 17165674 C A CUBN Missense_Mutation p.K134N 0.31 tolerated(0.19) benign(0.014) TCGA-CA-6718-01 10 17168782 17168782 C A CUBN Missense_Mutation p.R122I 0.21 tolerated(0.05) benign(0.312) TCGA-CA-6718-01 10 18903433 18903433 A G NSUN6 Silent p.S177S 0.08 TCGA-CA-6718-01 10 20432300 20432300 C T PLXDC2 Silent p.F206F 0.09 TCGA-CA-6718-01 10 21186167 21186167 T A NEBL 5'UTR 0.33 TCGA-CA-6718-01 10 21804625 21804625 G A SKIDA1 Silent p.C709C 0.18 TCGA-CA-6718-01 10 22700092 22700092 G A SPAG6 Missense_Mutation p.E483K 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6718-01 10 23730442 23730442 G A OTUD1 3'UTR 0.17 TCGA-CA-6718-01 10 24820866 24820866 A G KIAA1217 Missense_Mutation p.T1064A 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-CA-6718-01 10 24835279 24835279 C T KIAA1217 3'UTR 0.33 TCGA-CA-6718-01 10 25464639 25464639 C A GPR158 Missense_Mutation p.A97D 0.46 deleterious(0) possibly_damaging(0.846) TCGA-CA-6718-01 10 25861768 25861768 A C GPR158 Missense_Mutation p.I569L 0.18 tolerated(0.65) benign(0.012) TCGA-CA-6718-01 10 26355942 26355942 G A MYO3A Missense_Mutation p.R331Q 0.23 deleterious(0.03) benign(0.001) TCGA-CA-6718-01 10 26385531 26385531 G T MYO3A Missense_Mutation p.D566Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 10 27822871 27822871 C T RAB18 Silent p.V131V 0.25 TCGA-CA-6718-01 10 28023480 28023480 C A MKX Missense_Mutation p.R248I 0.25 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 10 28229687 28229687 C T ARMC4 Silent p.S597S 0.41 TCGA-CA-6718-01 10 28273218 28273218 C A ARMC4 Nonsense_Mutation p.E193* 0.37 TCGA-CA-6718-01 10 28884919 28884919 A C WAC Missense_Mutation p.K290Q 0.27 tolerated_low_confidence(0.11) benign(0.023) TCGA-CA-6718-01 10 30602517 30602517 C A MTPAP 3'UTR 0.34 TCGA-CA-6718-01 10 3158979 3158979 C T PFKP Silent p.I461I 0.26 TCGA-CA-6718-01 10 32307309 32307309 C A KIF5B Nonsense_Mutation p.E792* 0.29 TCGA-CA-6718-01 10 32573626 32573626 C A EPC1 Missense_Mutation p.A582S 0.28 tolerated(0.35) possibly_damaging(0.68) TCGA-CA-6718-01 10 32740795 32740795 G T CCDC7 Missense_Mutation p.K75N 0.29 tolerated(0.17) possibly_damaging(0.52) TCGA-CA-6718-01 10 33469104 33469104 C A NRP1 Missense_Mutation p.R891I 0.36 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 10 33475241 33475241 C A NRP1 Missense_Mutation p.E746D 0.19 tolerated(0.65) benign(0.003) TCGA-CA-6718-01 10 35426718 35426718 A C CREM 5'UTR 0.38 TCGA-CA-6718-01 10 35819114 35819114 C T CCNY Silent p.F174F 0.13 TCGA-CA-6718-01 10 37436321 37436321 G T ANKRD30A Missense_Mutation p.K437N 0.29 deleterious(0.03) benign(0.044) TCGA-CA-6718-01 10 37442570 37442570 A C ANKRD30A Missense_Mutation p.K537T 0.10 tolerated(0.71) benign(0.001) TCGA-CA-6718-01 10 38344450 38344450 G T ZNF33A Missense_Mutation p.E466D 0.33 deleterious(0.04) probably_damaging(0.986) TCGA-CA-6718-01 10 38406698 38406698 G T ZNF37A Nonsense_Mutation p.E207* 0.21 TCGA-CA-6718-01 10 38681002 38681002 A C SEPT7P9 RNA 0.22 TCGA-CA-6718-01 10 43019085 43019085 C T ZNF37BP RNA 0.24 TCGA-CA-6718-01 10 43606723 43606723 C A RET Silent p.S444S 0.32 TCGA-CA-6718-01 10 43619192 43619192 C T RET Missense_Mutation p.R959W 0.39 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 10 44112867 44112867 G T ZNF485 3'UTR 0.33 TCGA-CA-6718-01 10 45499208 45499208 G T ZNF22 Missense_Mutation p.R131I 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6718-01 10 45499642 45499642 G T ZNF22 3'UTR 0.25 TCGA-CA-6718-01 10 45500151 45500151 T G ZNF22 3'UTR 0.27 TCGA-CA-6718-01 10 45953692 45953692 C T MARCH8 Missense_Mutation p.V291I 0.29 tolerated_low_confidence(0.08) benign(0.021) TCGA-CA-6718-01 10 47088139 47088139 A C NPY4R 3'UTR 0.15 TCGA-CA-6718-01 10 48416522 48416522 A G GDF2 Missense_Mutation p.F58L 0.28 tolerated(0.92) benign(0.083) TCGA-CA-6718-01 10 49662203 49662203 C T ARHGAP22 Missense_Mutation p.G281D 0.33 deleterious(0) possibly_damaging(0.835) TCGA-CA-6718-01 10 50954814 50954814 G A OGDHL Silent p.H426H 0.35 TCGA-CA-6718-01 10 51829358 51829358 G T FAM21A Nonsense_Mutation p.E60* 0.29 TCGA-CA-6718-01 10 5254988 5254988 G T AKR1C4 Missense_Mutation p.D238Y 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 10 56077200 56077200 T G PCDH15 Missense_Mutation p.D236A 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6718-01 10 56089429 56089429 G A PCDH15 Missense_Mutation p.T211I 0.21 tolerated(0.23) benign(0.217) TCGA-CA-6718-01 10 5772917 5772917 G T FAM208B Nonsense_Mutation p.E319* 0.23 TCGA-CA-6718-01 10 58117836 58117836 T G ZWINT 3'UTR 0.43 TCGA-CA-6718-01 10 60549151 60549151 C T BICC1 Missense_Mutation p.R244C 0.24 deleterious(0.02) possibly_damaging(0.836) TCGA-CA-6718-01 10 61011369 61011369 C A FAM13C Nonsense_Mutation p.E534* 0.37 TCGA-CA-6718-01 10 61718955 61718955 T C C10orf40 5'UTR 0.25 TCGA-CA-6718-01 10 61833637 61833637 G A ANK3 Silent p.I2334I 0.23 TCGA-CA-6718-01 10 62631222 62631222 T C RHOBTB1 3'UTR 0.35 TCGA-CA-6718-01 10 69682746 69682746 G T HERC4 Missense_Mutation p.T1039N 0.28 tolerated(0.11) benign(0.427) TCGA-CA-6718-01 10 69934000 69934000 G A MYPN Silent p.T717T 0.19 TCGA-CA-6718-01 10 70405958 70405958 C T TET1 Missense_Mutation p.R1158W 0.23 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 10 70451616 70451616 T C TET1 3'UTR 0.25 TCGA-CA-6718-01 10 70645849 70645849 G A STOX1 Missense_Mutation p.G766E 0.35 tolerated(0.25) benign(0.003) TCGA-CA-6718-01 10 70962777 70962777 T G SUPV3L1 Missense_Mutation p.F585C 0.20 deleterious(0) probably_damaging(0.968) TCGA-CA-6718-01 10 71078736 71078736 C A HK1 Intron 0.18 TCGA-CA-6718-01 10 71683561 71683561 G A COL13A1 Missense_Mutation p.E401K 0.28 tolerated(0.07) probably_damaging(0.968) TCGA-CA-6718-01 10 71692321 71692321 G T COL13A1 Missense_Mutation p.E552D 0.22 tolerated(0.56) benign(0.04) TCGA-CA-6718-01 10 71977619 71977619 C T PPA1 Silent p.A82A 0.39 TCGA-CA-6718-01 10 72292461 72292461 G A PALD1 Missense_Mutation p.A240T 0.42 tolerated(0.64) benign(0.005) TCGA-CA-6718-01 10 7230600 7230600 C A SFMBT2 Missense_Mutation p.E598D 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6718-01 10 72538315 72538315 C A TBATA Nonsense_Mutation p.E169* 0.26 TCGA-CA-6718-01 10 73048340 73048340 C T UNC5B Missense_Mutation p.T306M 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6718-01 10 73576089 73576089 A C PSAP 3'UTR 0.19 TCGA-CA-6718-01 10 73857070 73857070 C A ASCC1 3'UTR 0.33 TCGA-CA-6718-01 10 74311058 74311058 T G MICU1 Silent p.P124P 0.33 TCGA-CA-6718-01 10 74992792 74992792 C T FAM149B1 Missense_Mutation p.S408F 0.34 deleterious(0.01) benign(0.002) TCGA-CA-6718-01 10 75008698 75008698 C A MRPS16 3'UTR 0.35 TCGA-CA-6718-01 10 75056855 75056855 A G TTC18 Missense_Mutation p.F600S 0.32 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 10 75197860 75197860 A G PPP3CB 3'UTR 0.20 TCGA-CA-6718-01 10 75404701 75404701 A G SYNPO2L 3'UTR 0.29 TCGA-CA-6718-01 10 75407610 75407610 G A SYNPO2L Silent p.G600G 0.29 TCGA-CA-6718-01 10 75834554 75834554 G A VCL Missense_Mutation p.A226T 0.29 deleterious(0.04) possibly_damaging(0.883) TCGA-CA-6718-01 10 7755196 7755196 C T ITIH2 Nonsense_Mutation p.R139* 0.17 TCGA-CA-6718-01 10 79800442 79800442 A C RPS24 Intron 0.33 TCGA-CA-6718-01 10 81375077 81375077 G T SFTPA1 3'Flank 0.30 TCGA-CA-6718-01 10 82036165 82036165 C A MAT1A Missense_Mutation p.Q245H 0.38 deleterious(0) benign(0.146) TCGA-CA-6718-01 10 82180087 82180087 C T FAM213A 5'UTR 0.33 TCGA-CA-6718-01 10 84744883 84744883 G A NRG3 Missense_Mutation p.R538Q 0.42 tolerated(1) benign(0.003) TCGA-CA-6718-01 10 84745089 84745089 G T NRG3 Missense_Mutation p.A607S 0.37 tolerated_low_confidence(0.06) benign(0.311) TCGA-CA-6718-01 10 85978958 85978958 G A CDHR1 3'Flank 0.28 TCGA-CA-6718-01 10 86012656 86012656 C T RGR Silent p.F138F 0.26 TCGA-CA-6718-01 10 87362369 87362369 C T GRID1 Silent p.S897S 0.32 TCGA-CA-6718-01 10 88277780 88277780 C T WAPAL Missense_Mutation p.G16D 0.21 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-CA-6718-01 10 88768135 88768135 G T RP11-96C23.10 3'Flank 0.28 TCGA-CA-6718-01 10 89692849 89692849 G A PTEN Nonsense_Mutation p.W111* 0.17 TCGA-CA-6718-01 10 89692856 89692856 G T PTEN Nonsense_Mutation p.E114* 0.21 TCGA-CA-6718-01 10 91066464 91066464 C T IFIT2 Missense_Mutation p.R251C 0.27 tolerated(0.16) benign(0.016) TCGA-CA-6718-01 10 91143096 91143096 T G IFIT1B Missense_Mutation p.L9R 0.35 tolerated(0.35) benign(0.194) TCGA-CA-6718-01 10 91177057 91177057 T C IFIT5 Missense_Mutation p.V34A 0.25 deleterious(0.02) benign(0.017) TCGA-CA-6718-01 10 91371728 91371728 C T PANK1 Missense_Mutation p.E261K 0.23 deleterious(0.04) probably_damaging(0.993) TCGA-CA-6718-01 10 91511194 91511194 G A KIF20B Silent p.E1356E 0.19 TCGA-CA-6718-01 10 92503435 92503435 T C HTR7 Silent p.T436T 0.28 TCGA-CA-6718-01 10 93220255 93220255 G A HECTD2 Missense_Mutation p.E114K 0.30 tolerated(0.09) possibly_damaging(0.794) TCGA-CA-6718-01 10 93753602 93753602 T G BTAF1 Missense_Mutation p.F1066C 0.30 tolerated(0.17) possibly_damaging(0.447) TCGA-CA-6718-01 10 94675668 94675668 G A EXOC6 Missense_Mutation p.E273K 0.27 tolerated(0.05) benign(0.067) TCGA-CA-6718-01 10 94695609 94695609 G T EXOC6 Missense_Mutation p.K393N 0.20 deleterious(0) probably_damaging(0.977) TCGA-CA-6718-01 10 96282100 96282100 G A TBC1D12 Splice_Site p.X631_splice 0.24 TCGA-CA-6718-01 10 96493102 96493102 G T CYP2C18 Nonsense_Mutation p.E400* 0.27 TCGA-CA-6718-01 10 96612560 96612560 G T CYP2C19 Missense_Mutation p.Q454H 0.32 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 10 97007086 97007086 C T PDLIM1 Missense_Mutation p.D191N 0.45 tolerated(0.08) benign(0.005) TCGA-CA-6718-01 10 97920061 97920061 C T ZNF518A RNA 0.36 TCGA-CA-6718-01 10 98741901 98741901 G T C10orf12 Nonsense_Mutation p.E252* 0.27 TCGA-CA-6718-01 10 98791419 98791419 A G SLIT1 Silent p.N818N 0.33 TCGA-CA-6718-01 10 99081410 99081410 C T FRAT1 3'UTR 0.31 TCGA-CA-6718-01 10 99081636 99081636 C A FRAT1 3'UTR 0.33 TCGA-CA-6718-01 10 99416626 99416626 T C PI4K2A Missense_Mutation p.W243R 0.23 deleterious(0) probably_damaging(0.979) TCGA-CA-6718-01 10 99968143 99968143 A C R3HCC1L Missense_Mutation p.K91T 0.34 deleterious(0.03) probably_damaging(0.988) TCGA-CA-6718-01 10 99968564 99968564 G T R3HCC1L Missense_Mutation p.E231D 0.29 tolerated(0.2) benign(0.05) TCGA-CA-6718-01 11 100064281 100064281 C T CNTN5 Silent p.V590V 0.24 TCGA-CA-6718-01 11 100221538 100221538 C T CNTN5 Nonsense_Mutation p.R1046* 0.24 TCGA-CA-6718-01 11 100846954 100846954 G T ARHGAP42 Missense_Mutation p.Q674H 0.38 tolerated(0.24) benign(0.005) TCGA-CA-6718-01 11 100863821 100863821 T C TMEM133 3'UTR 0.27 TCGA-CA-6718-01 11 100912738 100912738 C A PGR Nonsense_Mutation p.G862* 0.41 TCGA-CA-6718-01 11 101765770 101765770 C A ANGPTL5 Missense_Mutation p.K229N 0.23 deleterious(0.02) probably_damaging(1) TCGA-CA-6718-01 11 102207708 102207708 G T BIRC3 Nonsense_Mutation p.E564* 0.09 TCGA-CA-6718-01 11 102562450 102562450 G A MMP27 3'UTR 0.19 TCGA-CA-6718-01 11 102706944 102706944 G T MMP3 Missense_Mutation p.F449L 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-CA-6718-01 11 102733800 102733800 G T MMP12 RNA 0.21 TCGA-CA-6718-01 11 102995899 102995899 C T DYNC2H1 Missense_Mutation p.R578C 0.29 probably_damaging(0.997) TCGA-CA-6718-01 11 103029527 103029527 G T DYNC2H1 Nonsense_Mutation p.E1417* 0.27 TCGA-CA-6718-01 11 103780419 103780419 C A PDGFD 3'UTR 0.21 TCGA-CA-6718-01 11 103870821 103870821 T C PDGFD Missense_Mutation p.D96G 0.19 deleterious(0) benign(0.162) TCGA-CA-6718-01 11 10500079 10500079 A C AMPD3 Missense_Mutation p.K85N 0.30 deleterious(0.02) benign(0.007) TCGA-CA-6718-01 11 10518410 10518410 G T AMPD3 Missense_Mutation p.E503D 0.23 tolerated(0.26) possibly_damaging(0.876) TCGA-CA-6718-01 11 105797620 105797620 T C GRIA4 Silent p.I667I 0.25 TCGA-CA-6718-01 11 106579340 106579340 C T GUCY1A2 Missense_Mutation p.R661Q 0.23 deleterious(0.01) benign(0.228) TCGA-CA-6718-01 11 106849408 106849408 G A GUCY1A2 Missense_Mutation p.H142Y 0.23 tolerated(0.74) benign(0.005) TCGA-CA-6718-01 11 106849425 106849425 C A GUCY1A2 Missense_Mutation p.R136I 0.18 tolerated(0.14) benign(0.142) TCGA-CA-6718-01 11 107326466 107326466 C A CWF19L2 Nonsense_Mutation p.E48* 0.24 TCGA-CA-6718-01 11 107375479 107375479 C A ALKBH8 Nonsense_Mutation p.E634* 0.38 TCGA-CA-6718-01 11 107578668 107578668 C T SLN 5'UTR 0.30 TCGA-CA-6718-01 11 10785263 10785263 T G CTR9 Missense_Mutation p.F344C 0.30 tolerated(0.08) possibly_damaging(0.777) TCGA-CA-6718-01 11 107917061 107917061 G T CUL5 Nonsense_Mutation p.E67* 0.10 TCGA-CA-6718-01 11 108043331 108043331 C A NPAT Nonsense_Mutation p.E794* 0.38 TCGA-CA-6718-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.29 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 11 108383198 108383198 A C EXPH5 Silent p.V1012V 0.25 TCGA-CA-6718-01 11 108383309 108383309 T G EXPH5 Missense_Mutation p.K975N 0.34 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 11 108384855 108384855 G T EXPH5 Missense_Mutation p.S460Y 0.39 deleterious(0.05) probably_damaging(0.994) TCGA-CA-6718-01 11 108547959 108547959 A C DDX10 Missense_Mutation p.I176L 0.26 tolerated(0.07) benign(0.018) TCGA-CA-6718-01 11 110135508 110135508 T G RDX Missense_Mutation p.K63T 0.22 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 11 110451759 110451759 G A ARHGAP20 Silent p.S637S 0.12 TCGA-CA-6718-01 11 111168416 111168416 C T COLCA1 5'UTR 0.33 TCGA-CA-6718-01 11 111425973 111425973 A G LAYN Missense_Mutation p.T214A 0.21 tolerated(0.61) benign(0.001) TCGA-CA-6718-01 11 111597623 111597623 C T SIK2 3'UTR 0.32 TCGA-CA-6718-01 11 111938671 111938671 A C PIH1D2 Missense_Mutation p.L291R 0.18 tolerated(0.13) benign(0.054) TCGA-CA-6718-01 11 112040046 112040046 G T TEX12 Nonsense_Mutation p.E19* 0.36 TCGA-CA-6718-01 11 113126684 113126684 C T NCAM1 Silent p.G687G 0.39 TCGA-CA-6718-01 11 113133586 113133586 C A NCAM1 Intron 0.32 TCGA-CA-6718-01 11 113269722 113269722 C T ANKK1 Missense_Mutation p.S344F 0.25 deleterious(0.03) possibly_damaging(0.845) TCGA-CA-6718-01 11 114027126 114027126 C T ZBTB16 Missense_Mutation p.R446W 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 11 114262212 114262212 G T C11orf71 3'UTR 0.41 TCGA-CA-6718-01 11 114262299 114262299 A C C11orf71 Missense_Mutation p.I144M 0.26 deleterious_low_confidence(0) benign(0.307) TCGA-CA-6718-01 11 114393111 114393111 A G NXPE1 Missense_Mutation p.F266S 0.28 tolerated(0.49) benign(0.003) TCGA-CA-6718-01 11 114452463 114452463 A G NXPE4 Silent p.S292S 0.25 TCGA-CA-6718-01 11 116656573 116656573 C A ZNF259 Missense_Mutation p.R174I 0.21 deleterious(0) benign(0.345) TCGA-CA-6718-01 11 117150911 117150911 G T RNF214 Nonsense_Mutation p.E361* 0.29 TCGA-CA-6718-01 11 117282544 117282544 G A CEP164 Silent p.S1399S 0.32 TCGA-CA-6718-01 11 117351210 117351210 G A DSCAML1 Silent p.F971F 0.23 TCGA-CA-6718-01 11 118065083 118065083 T G AMICA1 Missense_Mutation p.K381T 0.23 deleterious(0.02) benign(0.276) TCGA-CA-6718-01 11 118184566 118184566 C T CD3E Missense_Mutation p.A166V 0.23 tolerated(0.17) benign(0.006) TCGA-CA-6718-01 11 118376479 118376479 G T KMT2A Missense_Mutation p.R3291I 0.26 probably_damaging(0.996) TCGA-CA-6718-01 11 118405319 118405319 C A TMEM25 3'UTR 0.58 TCGA-CA-6718-01 11 118471460 118471460 T G ARCN1 3'UTR 0.21 TCGA-CA-6718-01 11 118943983 118943983 C A VPS11 Missense_Mutation p.F319L 0.19 tolerated(0.33) benign(0.05) TCGA-CA-6718-01 11 119050671 119050671 G T NLRX1 Missense_Mutation p.K647N 0.39 deleterious(0.01) possibly_damaging(0.848) TCGA-CA-6718-01 11 119243741 119243741 G T USP2 Missense_Mutation p.F150L 0.29 tolerated_low_confidence(0.92) benign(0.015) TCGA-CA-6718-01 11 11951063 11951063 C A USP47 Nonsense_Mutation p.S422* 0.26 TCGA-CA-6718-01 11 11964320 11964320 T G USP47 Missense_Mutation p.F850V 0.32 tolerated_low_confidence(0.23) benign(0.025) TCGA-CA-6718-01 11 122669690 122669690 C A UBASH3B Silent p.V466V 0.30 TCGA-CA-6718-01 11 12316215 12316215 G T MICALCL Nonsense_Mutation p.E413* 0.10 TCGA-CA-6718-01 11 123777899 123777899 C A OR8D4 Missense_Mutation p.S254Y 0.12 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 11 124135375 124135375 C A OR8G5 Missense_Mutation p.S218Y 0.17 deleterious(0) benign(0.074) TCGA-CA-6718-01 11 124294638 124294638 C T OR8B4 Missense_Mutation p.G44S 0.41 tolerated_low_confidence(0.3) probably_damaging(0.998) TCGA-CA-6718-01 11 124790444 124790444 G T HEPACAM 3'UTR 0.17 TCGA-CA-6718-01 11 125647340 125647340 C T PATE2 Silent p.T93T 0.27 TCGA-CA-6718-01 11 125770388 125770388 A G HYLS1 3'UTR 0.40 TCGA-CA-6718-01 11 125780330 125780330 C T DDX25 Silent p.F193F 0.09 TCGA-CA-6718-01 11 125887138 125887138 T C CDON Missense_Mutation p.D258G 0.16 tolerated(0.13) benign(0.052) TCGA-CA-6718-01 11 1264757 1264757 C T MUC5B Missense_Mutation p.S2216L 0.21 benign(0) TCGA-CA-6718-01 11 1274102 1274102 G A MUC5B Missense_Mutation p.V5037I 0.25 unknown(0) TCGA-CA-6718-01 11 129748213 129748213 A G NFRKB Missense_Mutation p.V526A 0.32 tolerated(0.39) unknown(0) TCGA-CA-6718-01 11 129784684 129784684 C A PRDM10 Missense_Mutation p.R923I 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6718-01 11 130108408 130108408 G T ZBTB44 Missense_Mutation p.Q400K 0.27 tolerated(0.43) probably_damaging(0.985) TCGA-CA-6718-01 11 130785251 130785251 G A SNX19 Missense_Mutation p.A195V 0.29 tolerated(0.72) benign(0.009) TCGA-CA-6718-01 11 132307127 132307128 - T OPCML Frame_Shift_Ins p.I218Nfs*28 0.17 TCGA-CA-6718-01 11 133801653 133801653 C T IGSF9B Missense_Mutation p.R383Q 0.28 tolerated(0.29) benign(0.071) TCGA-CA-6718-01 11 134038435 134038435 T G NCAPD3 Missense_Mutation p.K1101T 0.26 tolerated(0.14) benign(0.292) TCGA-CA-6718-01 11 134090483 134090483 C T NCAPD3 Missense_Mutation p.E68K 0.42 tolerated(0.24) benign(0.009) TCGA-CA-6718-01 11 134121106 134121106 T A THYN1 Missense_Mutation p.K47I 0.24 tolerated(0.06) benign(0.013) TCGA-CA-6718-01 11 134177062 134177062 C T GLB1L3 Silent p.F307F 0.27 TCGA-CA-6718-01 11 134252719 134252719 C T B3GAT1 Missense_Mutation p.R268Q 0.26 tolerated(0.26) benign(0.215) TCGA-CA-6718-01 11 13736181 13736181 G A FAR1 Missense_Mutation p.A361T 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-CA-6718-01 11 14284332 14284332 C T RP11-21L19.1 3'Flank 0.32 TCGA-CA-6718-01 11 14854367 14854367 C A PDE3B Silent p.R732R 0.22 TCGA-CA-6718-01 11 1718860 1718860 A C KRTAP5-6 Missense_Mutation p.I129L 0.28 deleterious_low_confidence(0) unknown(0) TCGA-CA-6718-01 11 18028260 18028260 T G SERGEF Missense_Mutation p.K77T 0.19 tolerated(0.08) benign(0.199) TCGA-CA-6718-01 11 18057663 18057663 G A TPH1 Silent p.I48I 0.30 TCGA-CA-6718-01 11 18159292 18159292 C T MRGPRX3 Silent p.I181I 0.53 TCGA-CA-6718-01 11 18472564 18472564 C T LDHC Missense_Mutation p.R297W 0.24 deleterious(0) possibly_damaging(0.81) TCGA-CA-6718-01 11 18497990 18497990 A C LDHAL6A Missense_Mutation p.I218L 0.11 tolerated(0.85) benign(0.01) TCGA-CA-6718-01 11 18503414 18503414 G A TSG101 Silent p.A282A 0.25 TCGA-CA-6718-01 11 18553732 18553732 G T UEVLD 3'UTR 0.46 TCGA-CA-6718-01 11 18726070 18726070 G T IGSF22 Nonsense_Mutation p.S1309* 0.12 TCGA-CA-6718-01 11 19180558 19180558 T G ZDHHC13 Missense_Mutation p.F360C 0.30 tolerated(0.08) possibly_damaging(0.497) TCGA-CA-6718-01 11 22291969 22291969 C A ANO5 Missense_Mutation p.F670L 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6718-01 11 2356576 2356576 T C CD81-AS1 Intron 0.18 TCGA-CA-6718-01 11 2432946 2432946 G T TRPM5 Missense_Mutation p.F842L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 11 27016091 27016091 C A FIBIN Missense_Mutation p.F6L 0.25 tolerated_low_confidence(0.92) benign(0) TCGA-CA-6718-01 11 27695880 27695880 A G BDNF 5'UTR 0.44 TCGA-CA-6718-01 11 30517012 30517012 C A MPPED2 Missense_Mutation p.D123Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 11 30953389 30953389 C T DCDC1 Silent p.Q942Q 0.20 TCGA-CA-6718-01 11 31329420 31329420 T G DCDC1 Missense_Mutation p.K67T 0.29 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-CA-6718-01 11 31484828 31484828 C A IMMP1L 5'UTR 0.22 TCGA-CA-6718-01 11 31785038 31785038 C T ELP4 Intron 0.33 TCGA-CA-6718-01 11 31804947 31804947 C T ELP4 Missense_Mutation p.H384Y 0.24 deleterious(0.03) benign(0.183) TCGA-CA-6718-01 11 31815334 31815334 C T PAX6 Missense_Mutation p.R275Q 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6718-01 11 32126524 32126524 C T RCN1 3'UTR 0.26 TCGA-CA-6718-01 11 32635379 32635379 A C CCDC73 Missense_Mutation p.F829V 0.36 tolerated(1) benign(0.005) TCGA-CA-6718-01 11 32676502 32676502 G A CCDC73 Missense_Mutation p.A221V 0.11 deleterious(0) benign(0.149) TCGA-CA-6718-01 11 32954252 32954252 C A QSER1 Missense_Mutation p.S354Y 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-CA-6718-01 11 32998041 32998041 C A QSER1 3'UTR 0.24 TCGA-CA-6718-01 11 33054956 33054956 C A DEPDC7 Missense_Mutation p.F497L 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6718-01 11 33374673 33374673 T C HIPK3 Silent p.N1069N 0.21 TCGA-CA-6718-01 11 35492158 35492158 C T PAMR1 Missense_Mutation p.E235K 0.13 deleterious(0.01) possibly_damaging(0.72) TCGA-CA-6718-01 11 3721924 3721924 T C NUP98 Missense_Mutation p.I1220V 0.30 tolerated(0.75) benign(0.002) TCGA-CA-6718-01 11 3988825 3988825 G T STIM1 Missense_Mutation p.E61D 0.16 tolerated(1) benign(0.012) TCGA-CA-6718-01 11 45926584 45926584 G T MAPK8IP1 Missense_Mutation p.K652N 0.23 deleterious(0.03) possibly_damaging(0.851) TCGA-CA-6718-01 11 4608533 4608533 G T OR52I2 Missense_Mutation p.R164I 0.28 deleterious(0.03) benign(0.213) TCGA-CA-6718-01 11 4676451 4676451 A C OR51E1 3'UTR 0.20 TCGA-CA-6718-01 11 4702924 4702924 G T OR51E2 3'UTR 0.25 TCGA-CA-6718-01 11 47193856 47193856 C A ARFGAP2 Missense_Mutation p.K216N 0.28 deleterious(0) possibly_damaging(0.623) TCGA-CA-6718-01 11 47336866 47336866 C A MADD Silent p.I1455I 0.26 TCGA-CA-6718-01 11 48328461 48328461 G T OR4S1 Missense_Mutation p.E229D 0.29 deleterious(0.02) benign(0.354) TCGA-CA-6718-01 11 4869964 4869964 G A OR51S1 Nonsense_Mutation p.R159* 0.25 TCGA-CA-6718-01 11 49175917 49175917 A G FOLH1 Missense_Mutation p.V584A 0.33 tolerated(0.49) benign(0.079) TCGA-CA-6718-01 11 49192747 49192747 C A FOLH1 Missense_Mutation p.E436D 0.30 deleterious(0.02) benign(0.25) TCGA-CA-6718-01 11 4936390 4936390 G T OR51G2 Silent p.L168L 0.14 TCGA-CA-6718-01 11 49831513 49831513 A C RP11-707M1.1 RNA 0.20 TCGA-CA-6718-01 11 5013531 5013531 G T MMP26 3'UTR 0.25 TCGA-CA-6718-01 11 5068688 5068688 A C OR52J3 Missense_Mutation p.K311N 0.40 tolerated(0.07) benign(0.005) TCGA-CA-6718-01 11 51412117 51412117 T G OR4A5 Missense_Mutation p.Q93H 0.25 tolerated_low_confidence(0.1) benign(0.308) TCGA-CA-6718-01 11 51515476 51515476 C A OR4C46 Silent p.S65S 0.34 TCGA-CA-6718-01 11 5153440 5153440 G T OR52A5 Missense_Mutation p.H145N 0.26 tolerated(0.08) benign(0.005) TCGA-CA-6718-01 11 5274457 5274457 C A HBG2 3'UTR 0.18 TCGA-CA-6718-01 11 5443584 5443584 C T OR51Q1 Missense_Mutation p.R52C 0.37 tolerated(0.05) benign(0.006) TCGA-CA-6718-01 11 55111375 55111375 A C OR4A16 Missense_Mutation p.K233N 0.32 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CA-6718-01 11 55135924 55135924 C A OR4A15 Missense_Mutation p.L189I 0.28 tolerated_low_confidence(0.12) benign(0.375) TCGA-CA-6718-01 11 55321790 55321790 C A OR4C15 Nonsense_Mutation p.S3* 0.22 TCGA-CA-6718-01 11 5536223 5536223 C T UBQLNL 3'UTR 0.29 TCGA-CA-6718-01 11 55370931 55370931 C A OR4C11 Nonsense_Mutation p.E307* 0.18 TCGA-CA-6718-01 11 55406130 55406130 C A OR4P4 Silent p.L99L 0.16 TCGA-CA-6718-01 11 55587105 55587105 G A OR5D18 5'UTR 0.26 TCGA-CA-6718-01 11 55595104 55595104 C A OR5L2 Missense_Mutation p.S137Y 0.22 deleterious(0) possibly_damaging(0.907) TCGA-CA-6718-01 11 55595261 55595261 C T OR5L2 Silent p.C189C 0.29 TCGA-CA-6718-01 11 55606573 55606573 C A OR5D16 Missense_Mutation p.L116I 0.17 deleterious(0.03) possibly_damaging(0.841) TCGA-CA-6718-01 11 55944924 55944924 C A OR5J2 Missense_Mutation p.F277L 0.22 deleterious(0.02) possibly_damaging(0.651) TCGA-CA-6718-01 11 5602148 5602148 T G OR52B6 Missense_Mutation p.F14L 0.40 tolerated_low_confidence(1) benign(0) TCGA-CA-6718-01 11 56057664 56057664 C T OR8H1 Missense_Mutation p.R292K 0.23 deleterious(0.01) benign(0.163) TCGA-CA-6718-01 11 56057784 56057784 C T OR8H1 Missense_Mutation p.G252E 0.29 deleterious(0) possibly_damaging(0.795) TCGA-CA-6718-01 11 56086117 56086117 T G OR8K3 Missense_Mutation p.L112R 0.35 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-CA-6718-01 11 56086313 56086313 C A OR8K3 Missense_Mutation p.F177L 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-CA-6718-01 11 56114156 56114156 C A OR8K1 Silent p.L214L 0.31 TCGA-CA-6718-01 11 56143192 56143192 C A OR8U1 Missense_Mutation p.F31L 0.37 deleterious(0.02) probably_damaging(0.995) TCGA-CA-6718-01 11 56143852 56143852 C A OR8U1 Missense_Mutation p.F251L 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-CA-6718-01 11 56237629 56237629 C T OR5M3 Silent p.A115A 0.21 TCGA-CA-6718-01 11 56310596 56310596 T G OR5M11 Silent p.I46I 0.16 TCGA-CA-6718-01 11 56380243 56380243 T G OR5M1 Missense_Mutation p.T246P 0.20 deleterious(0) possibly_damaging(0.782) TCGA-CA-6718-01 11 5662411 5662411 C A TRIM34 Silent p.I255I 0.25 TCGA-CA-6718-01 11 56756691 56756691 C A OR5AK2 Missense_Mutation p.F101L 0.24 tolerated(1) benign(0) TCGA-CA-6718-01 11 56756801 56756801 G A OR5AK2 Missense_Mutation p.R138Q 0.17 tolerated(0.81) benign(0.009) TCGA-CA-6718-01 11 57175186 57175186 C A SLC43A3 3'UTR 0.33 TCGA-CA-6718-01 11 57799204 57799204 C A OR6Q1 Missense_Mutation p.F260L 0.17 tolerated(0.51) probably_damaging(0.987) TCGA-CA-6718-01 11 57948988 57948988 A C OR9Q1 3'UTR 0.24 TCGA-CA-6718-01 11 57971147 57971147 A T OR1S2 Silent p.A169A 0.19 TCGA-CA-6718-01 11 57983180 57983180 A C OR1S1 Missense_Mutation p.I322L 0.16 tolerated(0.32) benign(0) TCGA-CA-6718-01 11 5905521 5905521 G T OR52E4 5'UTR 0.22 TCGA-CA-6718-01 11 59132763 59132763 T G OR5AN1 Missense_Mutation p.F278V 0.29 tolerated(0.1) benign(0.042) TCGA-CA-6718-01 11 59245249 59245249 C T OR4D10 Missense_Mutation p.S116L 0.25 tolerated(0.06) benign(0.009) TCGA-CA-6718-01 11 59633897 59633897 G T TCN1 Missense_Mutation p.S16Y 0.23 tolerated(0.18) possibly_damaging(0.883) TCGA-CA-6718-01 11 61133679 61133679 C T TMEM138 Silent p.V97V 0.29 TCGA-CA-6718-01 11 61205477 61205477 C A SDHAF2 Missense_Mutation p.L88I 0.20 tolerated(0.13) benign(0.132) TCGA-CA-6718-01 11 61253289 61253289 C T PPP1R32 Missense_Mutation p.S198L 0.32 deleterious(0.01) possibly_damaging(0.545) TCGA-CA-6718-01 11 61615706 61615706 G A FADS2 Missense_Mutation p.D232N 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6718-01 11 62012252 62012252 T C SCGB1D2 3'UTR 0.34 TCGA-CA-6718-01 11 62284920 62284920 T G AHNAK Missense_Mutation p.T5657P 0.18 probably_damaging(0.986) TCGA-CA-6718-01 11 62286804 62286804 G T AHNAK Missense_Mutation p.H5029N 0.21 benign(0.419) TCGA-CA-6718-01 11 62288139 62288139 G A AHNAK Missense_Mutation p.P4584S 0.27 probably_damaging(0.999) TCGA-CA-6718-01 11 62297969 62297969 T G AHNAK Missense_Mutation p.K1307T 0.09 probably_damaging(0.999) TCGA-CA-6718-01 11 62299351 62299351 C T AHNAK Silent p.E846E 0.24 TCGA-CA-6718-01 11 62490172 62490172 G T HNRNPUL2 Missense_Mutation p.F332L 0.39 tolerated(0.26) benign(0.009) TCGA-CA-6718-01 11 62568633 62568633 A C NXF1 Missense_Mutation p.L280R 0.33 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 11 62886300 62886300 G A SLC22A24 Intron 0.41 TCGA-CA-6718-01 11 62911183 62911183 G T SLC22A24 Missense_Mutation p.F23L 0.53 tolerated(0.37) benign(0.001) TCGA-CA-6718-01 11 63525710 63525710 A G RTN3 3'UTR 0.29 TCGA-CA-6718-01 11 64000047 64000047 G A DNAJC4 Missense_Mutation p.R109Q 0.36 tolerated(0.19) benign(0) TCGA-CA-6718-01 11 6424923 6424923 C A APBB1 Missense_Mutation p.G284V 0.29 tolerated(0.2) benign(0.099) TCGA-CA-6718-01 11 64519447 64519447 C T PYGM Missense_Mutation p.E573K 0.27 deleterious(0) possibly_damaging(0.849) TCGA-CA-6718-01 11 65009514 65009514 C A SLC22A20 RNA 0.27 TCGA-CA-6718-01 11 65043371 65043371 G T POLA2 Missense_Mutation p.Q121H 0.35 deleterious(0.02) benign(0.049) TCGA-CA-6718-01 11 6579438 6579438 A C DNHD1 Silent p.T2971T 0.11 TCGA-CA-6718-01 11 6638026 6638026 A C TPP1 Missense_Mutation p.F251C 0.41 tolerated(0.05) benign(0.277) TCGA-CA-6718-01 11 66619277 66619277 C A PC Missense_Mutation p.D656Y 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 11 67267398 67267398 G T PITPNM1 Missense_Mutation p.F350L 0.55 deleterious(0) benign(0.008) TCGA-CA-6718-01 11 67432828 67432828 G A ALDH3B2 Missense_Mutation p.R212W 0.32 deleterious(0.01) probably_damaging(1) TCGA-CA-6718-01 11 67938555 67938555 C A SUV420H1 Nonsense_Mutation p.E302* 0.26 TCGA-CA-6718-01 11 69482348 69482348 G A ORAOV1 Missense_Mutation p.S118L 0.27 deleterious(0) possibly_damaging(0.848) TCGA-CA-6718-01 11 70009494 70009494 C T ANO1 Intron 0.36 TCGA-CA-6718-01 11 70202341 70202341 A C PPFIA1 Missense_Mutation p.N855H 0.20 deleterious(0.01) benign(0.017) TCGA-CA-6718-01 11 7021924 7021924 G T ZNF214 Missense_Mutation p.F330L 0.21 tolerated(1) benign(0) TCGA-CA-6718-01 11 7059824 7059824 G T NLRP14 Missense_Mutation p.D3Y 0.11 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CA-6718-01 11 7063852 7063852 G A NLRP14 Missense_Mutation p.D199N 0.30 deleterious(0.04) possibly_damaging(0.614) TCGA-CA-6718-01 11 71929705 71929705 A C FOLR2 Missense_Mutation p.D26A 0.23 deleterious(0.04) benign(0.284) TCGA-CA-6718-01 11 7335003 7335003 C T SYT9 Missense_Mutation p.P292L 0.12 tolerated(0.09) benign(0.199) TCGA-CA-6718-01 11 73388031 73388031 G T RAB6A 3'UTR 0.20 TCGA-CA-6718-01 11 73574274 73574274 C A MRPL48 Missense_Mutation p.L178I 0.17 tolerated(0.33) possibly_damaging(0.595) TCGA-CA-6718-01 11 74049636 74049636 A G PGM2L1 Missense_Mutation p.V548A 0.25 tolerated(0.1) benign(0.014) TCGA-CA-6718-01 11 74056619 74056619 T G PGM2L1 Missense_Mutation p.K371N 0.26 tolerated(0.33) benign(0.049) TCGA-CA-6718-01 11 74415611 74415611 C T CHRDL2 Missense_Mutation p.S224N 0.20 tolerated(0.18) benign(0.085) TCGA-CA-6718-01 11 75319309 75319309 G A MAP6 Nonsense_Mutation p.Q322* 0.26 TCGA-CA-6718-01 11 75590944 75590944 G A UVRAG Missense_Mutation p.D98N 0.29 deleterious(0) probably_damaging(0.968) TCGA-CA-6718-01 11 77402277 77402277 G A RSF1 Missense_Mutation p.L943F 0.29 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 11 77692616 77692616 C T INTS4 Missense_Mutation p.D85N 0.33 deleterious(0.01) possibly_damaging(0.908) TCGA-CA-6718-01 11 77727941 77727941 C A KCTD14 Missense_Mutation p.A156S 0.30 deleterious(0.02) possibly_damaging(0.864) TCGA-CA-6718-01 11 78602315 78602315 G A TENM4 Silent p.G272G 0.14 TCGA-CA-6718-01 11 7982133 7982133 C A NLRP10 Missense_Mutation p.Q342H 0.10 deleterious(0) possibly_damaging(0.907) TCGA-CA-6718-01 11 82877231 82877231 A G PCF11 Missense_Mutation p.K431R 0.28 tolerated(1) possibly_damaging(0.852) TCGA-CA-6718-01 11 83770520 83770520 C A DLG2 Missense_Mutation p.D253Y 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 11 83874521 83874521 C A DLG2 Nonsense_Mutation p.E203* 0.23 TCGA-CA-6718-01 11 84996401 84996401 C A DLG2 Nonsense_Mutation p.E17* 0.21 TCGA-CA-6718-01 11 85723362 85723362 A C PICALM Missense_Mutation p.L207R 0.30 deleterious(0) probably_damaging(0.973) TCGA-CA-6718-01 11 86662355 86662355 A C FZD4 Missense_Mutation p.I481M 0.25 deleterious(0.04) benign(0.043) TCGA-CA-6718-01 11 88961061 88961061 T C TYR Silent p.Y369Y 0.27 TCGA-CA-6718-01 11 89135546 89135546 T A NOX4 Missense_Mutation p.K265I 0.30 tolerated(0.18) benign(0.001) TCGA-CA-6718-01 11 89935495 89935495 G T CHORDC1 3'UTR 0.23 TCGA-CA-6718-01 11 9009774 9009774 C T NRIP3 Missense_Mutation p.R77Q 0.28 tolerated(0.26) benign(0.341) TCGA-CA-6718-01 11 9051471 9051471 C T SCUBE2 Silent p.T764T 0.23 TCGA-CA-6718-01 11 92087382 92087382 G T FAT3 Missense_Mutation p.A702S 0.31 benign(0.316) TCGA-CA-6718-01 11 92087649 92087649 C T FAT3 Nonsense_Mutation p.R791* 0.20 TCGA-CA-6718-01 11 92087710 92087710 A C FAT3 Missense_Mutation p.K811T 0.20 possibly_damaging(0.707) TCGA-CA-6718-01 11 9225471 9225471 C T DENND5A Missense_Mutation p.A229T 0.26 deleterious(0.04) probably_damaging(0.919) TCGA-CA-6718-01 11 92534852 92534852 C A FAT3 Missense_Mutation p.F2891L 0.17 benign(0.364) TCGA-CA-6718-01 11 93523932 93523932 C T MED17 Missense_Mutation p.L204F 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6718-01 11 94279177 94279177 G A FUT4 3'UTR 0.29 TCGA-CA-6718-01 11 94802096 94802096 C A SRSF8 3'UTR 0.41 TCGA-CA-6718-01 11 94802323 94802323 T G SRSF8 3'UTR 0.31 TCGA-CA-6718-01 11 96124207 96124207 C T JRKL Missense_Mutation p.R132W 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 11 9735174 9735174 T C SWAP70 Silent p.I134I 0.29 TCGA-CA-6718-01 11 9803142 9803142 T C SBF2 Missense_Mutation p.H1788R 0.35 tolerated(0.28) benign(0.433) TCGA-CA-6718-01 11 99932104 99932104 C T CNTN5 Missense_Mutation p.R381C 0.20 deleterious(0) probably_damaging(0.987) TCGA-CA-6718-01 12 100173661 100173661 T C ANKS1B Missense_Mutation p.T279A 0.20 tolerated(1) benign(0.001) TCGA-CA-6718-01 12 100707248 100707248 C T SCYL2 Missense_Mutation p.R301C 0.33 deleterious(0.01) benign(0.173) TCGA-CA-6718-01 12 100930798 100930798 C A NR1H4 Missense_Mutation p.L312I 0.22 deleterious(0.04) possibly_damaging(0.811) TCGA-CA-6718-01 12 101560353 101560353 C T SLC5A8 Missense_Mutation p.S482N 0.18 tolerated(0.39) benign(0.001) TCGA-CA-6718-01 12 101776840 101776840 G A UTP20 Missense_Mutation p.A2560T 0.27 deleterious(0) benign(0.001) TCGA-CA-6718-01 12 102559591 102559591 A C PARPBP Missense_Mutation p.K251Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 12 102590741 102590741 G T PARPBP 3'Flank 0.28 TCGA-CA-6718-01 12 102874230 102874230 G A IGF1 5'UTR 0.50 TCGA-CA-6718-01 12 104390576 104390576 C T GLT8D2 Silent p.A179A 0.31 TCGA-CA-6718-01 12 104529252 104529252 T C NFYB 5'UTR 0.26 TCGA-CA-6718-01 12 104713273 104713273 A C TXNRD1 Missense_Mutation p.K300T 0.22 tolerated(1) possibly_damaging(0.554) TCGA-CA-6718-01 12 105151089 105151089 C T CHST11 Silent p.F189F 0.33 TCGA-CA-6718-01 12 10530777 10530777 T G KLRK1 Missense_Mutation p.N163H 0.21 deleterious(0.03) benign(0.085) TCGA-CA-6718-01 12 105420422 105420422 T G ALDH1L2 Missense_Mutation p.K873Q 0.19 deleterious(0.04) benign(0.018) TCGA-CA-6718-01 12 105431885 105431885 C T ALDH1L2 Missense_Mutation p.R714Q 0.30 tolerated(0.43) benign(0.074) TCGA-CA-6718-01 12 10570954 10570954 C A KLRC3 Nonsense_Mutation p.E159* 0.29 TCGA-CA-6718-01 12 108004106 108004106 G A BTBD11 Missense_Mutation p.D595N 0.48 deleterious(0.02) probably_damaging(0.991) TCGA-CA-6718-01 12 109210908 109210908 C T SSH1 Missense_Mutation p.D103N 0.23 tolerated(0.23) benign(0.004) TCGA-CA-6718-01 12 109519149 109519149 G A USP30 Missense_Mutation p.R244Q 0.10 deleterious(0.01) probably_damaging(0.969) TCGA-CA-6718-01 12 10954396 10954396 G T TAS2R7 Nonsense_Mutation p.Y258* 0.32 TCGA-CA-6718-01 12 10978112 10978112 G A TAS2R10 Nonsense_Mutation p.R253* 0.24 TCGA-CA-6718-01 12 109928920 109928920 C A UBE3B Missense_Mutation p.S234Y 0.35 deleterious(0) benign(0.309) TCGA-CA-6718-01 12 109968451 109968451 T C UBE3B Silent p.A970A 0.27 TCGA-CA-6718-01 12 110231803 110231803 C T TRPV4 Missense_Mutation p.V506M 0.08 tolerated(0.14) benign(0.002) TCGA-CA-6718-01 12 110454204 110454204 C A ANKRD13A Missense_Mutation p.F122L 0.38 deleterious(0.01) benign(0.395) TCGA-CA-6718-01 12 11061082 11061082 G T TAS2R13 Missense_Mutation p.F272L 0.19 tolerated(1) benign(0.002) TCGA-CA-6718-01 12 11061748 11061748 G T TAS2R13 Silent p.I50I 0.23 TCGA-CA-6718-01 12 111322047 111322047 G A CCDC63 Missense_Mutation p.R356Q 0.24 tolerated(0.47) benign(0.177) TCGA-CA-6718-01 12 112642326 112642326 C T HECTD4 Missense_Mutation p.E2599K 0.33 probably_damaging(0.994) TCGA-CA-6718-01 12 112926915 112926915 G A PTPN11 Missense_Mutation p.R512Q 0.32 tolerated(0.12) benign(0.042) TCGA-CA-6718-01 12 112939969 112939969 G A PTPN11 Missense_Mutation p.E541K 0.08 deleterious(0.03) benign(0.061) TCGA-CA-6718-01 12 113334666 113334666 C A RPH3A 3'UTR 0.32 TCGA-CA-6718-01 12 113379697 113379697 G A OAS3 Intron 0.37 TCGA-CA-6718-01 12 114804123 114804123 C T TBX5 Missense_Mutation p.E277K 0.26 tolerated(0.42) benign(0.124) TCGA-CA-6718-01 12 115120675 115120675 C A TBX3 Nonsense_Mutation p.E111* 0.24 TCGA-CA-6718-01 12 117680487 117680487 G A NOS1 Nonsense_Mutation p.R1030* 0.18 TCGA-CA-6718-01 12 118467596 118467596 C T RFC5 Nonsense_Mutation p.R298* 0.29 TCGA-CA-6718-01 12 119583368 119583368 G T SRRM4 Missense_Mutation p.K318N 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.634) TCGA-CA-6718-01 12 120611632 120611632 T G GCN1L1 Splice_Site p.X398_splice 0.24 TCGA-CA-6718-01 12 121134143 121134143 C T MLEC Missense_Mutation p.P225L 0.26 deleterious(0.01) benign(0.021) TCGA-CA-6718-01 12 121442031 121442031 C A C12orf43 Missense_Mutation p.K238N 0.25 deleterious(0) possibly_damaging(0.858) TCGA-CA-6718-01 12 122091114 122091114 G A MORN3 Missense_Mutation p.A172V 0.32 tolerated(0.05) benign(0.028) TCGA-CA-6718-01 12 122437640 122437640 G A WDR66 Missense_Mutation p.E1009K 0.24 deleterious(0) possibly_damaging(0.769) TCGA-CA-6718-01 12 123069444 123069444 T G KNTC1 Missense_Mutation p.F1147L 0.22 tolerated(1) benign(0) TCGA-CA-6718-01 12 123186693 123186693 A C HCAR2 3'UTR 0.38 TCGA-CA-6718-01 12 123414673 123414673 T C ABCB9 Missense_Mutation p.I696V 0.37 tolerated(1) benign(0.003) TCGA-CA-6718-01 12 123706418 123706418 A C MPHOSPH9 5'UTR 0.25 TCGA-CA-6718-01 12 123780525 123780525 A C SBNO1 Missense_Mutation p.L1371R 0.26 deleterious(0.05) probably_damaging(0.944) TCGA-CA-6718-01 12 123800133 123800133 T G SBNO1 Silent p.R1004R 0.16 TCGA-CA-6718-01 12 123808313 123808313 A C SBNO1 Nonsense_Mutation p.L680* 0.39 TCGA-CA-6718-01 12 123829875 123829875 A C SBNO1 Missense_Mutation p.N160K 0.29 tolerated_low_confidence(0.16) benign(0.035) TCGA-CA-6718-01 12 123950575 123950575 G A SNRNP35 Missense_Mutation p.R168Q 0.19 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 12 124209234 124209234 G T ATP6V0A2 Nonsense_Mutation p.E110* 0.30 TCGA-CA-6718-01 12 124401184 124401184 G T DNAH10 Missense_Mutation p.D3517Y 0.18 probably_damaging(0.926) TCGA-CA-6718-01 12 124409687 124409687 T G DNAH10 Missense_Mutation p.C3835G 0.35 probably_damaging(0.997) TCGA-CA-6718-01 12 124496727 124496727 C A ZNF664 Missense_Mutation p.F12L 0.21 deleterious(0.04) possibly_damaging(0.75) TCGA-CA-6718-01 12 126139266 126139266 T G TMEM132B 3'UTR 0.34 TCGA-CA-6718-01 12 129283832 129283832 G A SLC15A4 Silent p.I515I 0.35 TCGA-CA-6718-01 12 129299477 129299477 G A SLC15A4 Missense_Mutation p.P229S 0.32 tolerated(0.05) probably_damaging(0.92) TCGA-CA-6718-01 12 13240961 13240961 T C GSG1 Missense_Mutation p.T149A 0.25 tolerated(0.57) benign(0.002) TCGA-CA-6718-01 12 13241675 13241675 C A GSG1 Intron 0.29 TCGA-CA-6718-01 12 13248574 13248574 G A GSG1 Intron 0.27 TCGA-CA-6718-01 12 132551399 132551399 G A EP400 Silent p.A2878A 0.36 TCGA-CA-6718-01 12 133218334 133218334 G A POLE Silent p.D1759D 0.33 TCGA-CA-6718-01 12 133253184 133253184 G C POLE Missense_Mutation p.P286R 0.36 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 12 13720042 13720042 C T GRIN2B Missense_Mutation p.E839K 0.31 deleterious(0) probably_damaging(0.99) TCGA-CA-6718-01 12 14018968 14018968 A C GRIN2B Missense_Mutation p.F59V 0.11 tolerated(0.14) probably_damaging(0.981) TCGA-CA-6718-01 12 14765871 14765871 C A GUCY2C 3'UTR 0.44 TCGA-CA-6718-01 12 14928534 14928534 A G H2AFJ 3'UTR 0.22 TCGA-CA-6718-01 12 14958874 14958874 G T SMCO3 3'UTR 0.23 TCGA-CA-6718-01 12 14976558 14976558 A C C12orf60 Missense_Mutation p.K230T 0.19 deleterious(0.01) benign(0.382) TCGA-CA-6718-01 12 15067713 15067713 C A ERP27 Nonsense_Mutation p.E260* 0.15 TCGA-CA-6718-01 12 18242252 18242252 C A RERGL 5'UTR 0.39 TCGA-CA-6718-01 12 18435282 18435282 C A PIK3C2G Missense_Mutation p.F89L 0.45 tolerated_low_confidence(0.53) benign(0.002) TCGA-CA-6718-01 12 18439783 18439783 A G PIK3C2G Silent p.S227S 0.26 TCGA-CA-6718-01 12 18836249 18836249 C T PLCZ1 Missense_Mutation p.R584H 0.24 tolerated(1) benign(0.004) TCGA-CA-6718-01 12 18837163 18837163 C A PLCZ1 Nonsense_Mutation p.E548* 0.25 TCGA-CA-6718-01 12 1995501 1995501 A C CACNA2D4 Missense_Mutation p.I294S 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 12 21958180 21958180 C T ABCC9 Intron 0.24 TCGA-CA-6718-01 12 22824229 22824229 G T ETNK1 Nonsense_Mutation p.E331* 0.31 TCGA-CA-6718-01 12 24736728 24736728 G A LINC00477 RNA 0.50 TCGA-CA-6718-01 12 25378647 25378647 T G KRAS Missense_Mutation p.K117N 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6718-01 12 25398255 25398255 G T KRAS Missense_Mutation p.Q22K 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-CA-6718-01 12 26232022 26232022 C A RASSF8 3'UTR 0.29 TCGA-CA-6718-01 12 26277050 26277050 G T BHLHE41 Nonsense_Mutation p.C63* 0.32 TCGA-CA-6718-01 12 26277082 26277082 C A BHLHE41 Nonsense_Mutation p.E53* 0.32 TCGA-CA-6718-01 12 26580908 26580908 T A ITPR2 Missense_Mutation p.M2295L 0.10 tolerated(0.1) benign(0.003) TCGA-CA-6718-01 12 28702032 28702032 T C CCDC91 Silent p.L418L 0.16 TCGA-CA-6718-01 12 30887917 30887917 C A CAPRIN2 Missense_Mutation p.R265I 0.42 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 12 30887963 30887963 C A CAPRIN2 Nonsense_Mutation p.E250* 0.32 TCGA-CA-6718-01 12 31842008 31842008 G A AMN1 Silent p.V212V 0.26 TCGA-CA-6718-01 12 32908809 32908809 C A YARS2 5'UTR 0.43 TCGA-CA-6718-01 12 38714658 38714658 T G ALG10B Silent p.T355T 0.20 TCGA-CA-6718-01 12 39064554 39064554 A G CPNE8 Missense_Mutation p.Y495H 0.41 tolerated(0.52) benign(0.406) TCGA-CA-6718-01 12 39071268 39071268 C T CPNE8 Missense_Mutation p.E454K 0.34 tolerated(0.06) possibly_damaging(0.519) TCGA-CA-6718-01 12 39161529 39161529 C A CPNE8 Missense_Mutation p.L161F 0.15 tolerated(0.31) possibly_damaging(0.529) TCGA-CA-6718-01 12 40010937 40010937 C T ABCD2 Missense_Mutation p.A325T 0.27 tolerated(0.18) benign(0.41) TCGA-CA-6718-01 12 40681264 40681264 A C LRRK2 Missense_Mutation p.K871T 0.20 deleterious(0.01) possibly_damaging(0.694) TCGA-CA-6718-01 12 40697865 40697865 G T LRRK2 Missense_Mutation p.D1236Y 0.27 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 12 40713869 40713869 C A LRRK2 Nonsense_Mutation p.S1636* 0.20 TCGA-CA-6718-01 12 40714885 40714885 G T LRRK2 Nonsense_Mutation p.E1689* 0.27 TCGA-CA-6718-01 12 40745396 40745396 T G LRRK2 Nonsense_Mutation p.L2146* 0.20 TCGA-CA-6718-01 12 41333234 41333234 G A CNTN1 Silent p.P442P 0.21 TCGA-CA-6718-01 12 41966450 41966450 C A PDZRN4 Missense_Mutation p.D623E 0.22 tolerated(1) benign(0.001) TCGA-CA-6718-01 12 43826148 43826148 C A ADAMTS20 Nonsense_Mutation p.E1019* 0.23 TCGA-CA-6718-01 12 43833714 43833714 C A ADAMTS20 Nonsense_Mutation p.E817* 0.17 TCGA-CA-6718-01 12 43896085 43896085 C A ADAMTS20 Missense_Mutation p.R246I 0.22 tolerated(0.09) possibly_damaging(0.476) TCGA-CA-6718-01 12 44190816 44190816 A C TWF1 Missense_Mutation p.I289S 0.27 tolerated(0.79) benign(0.203) TCGA-CA-6718-01 12 44913886 44913886 C A NELL2 Missense_Mutation p.D818Y 0.16 deleterious(0) possibly_damaging(0.873) TCGA-CA-6718-01 12 45169849 45169849 C A NELL2 Nonsense_Mutation p.E333* 0.31 TCGA-CA-6718-01 12 45568375 45568375 T G PLEKHA8P1 RNA 0.27 TCGA-CA-6718-01 12 4614478 4614478 A C C12orf4 Missense_Mutation p.L411V 0.40 tolerated(0.36) benign(0.245) TCGA-CA-6718-01 12 46231368 46231368 T G ARID2 Missense_Mutation p.I403S 0.08 deleterious(0) possibly_damaging(0.889) TCGA-CA-6718-01 12 46287489 46287489 C A ARID2 Nonsense_Mutation p.S1783* 0.27 TCGA-CA-6718-01 12 4645355 4645355 C A C12orf4 Missense_Mutation p.K2N 0.27 tolerated_low_confidence(0.1) benign(0.19) TCGA-CA-6718-01 12 47186828 47186828 G T SLC38A4 Silent p.V9V 0.30 TCGA-CA-6718-01 12 47471887 47471887 G A AMIGO2 Missense_Mutation p.A300V 0.29 tolerated(0.09) probably_damaging(1) TCGA-CA-6718-01 12 47629796 47629796 C T PCED1B Missense_Mutation p.S317F 0.32 tolerated(0.72) benign(0.002) TCGA-CA-6718-01 12 47629947 47629947 C A PCED1B Missense_Mutation p.F367L 0.26 tolerated(0.1) benign(0.157) TCGA-CA-6718-01 12 48578669 48578669 G T C12orf68 3'UTR 0.50 TCGA-CA-6718-01 12 49110332 49110332 T C CCNT1 Missense_Mutation p.N43D 0.19 deleterious(0.02) possibly_damaging(0.613) TCGA-CA-6718-01 12 49219504 49219504 C T CACNB3 Missense_Mutation p.P232S 0.19 deleterious(0.02) possibly_damaging(0.901) TCGA-CA-6718-01 12 49220274 49220274 C T CACNB3 Silent p.I289I 0.27 TCGA-CA-6718-01 12 49312620 49312620 G T CCDC65 Missense_Mutation p.K320N 0.25 tolerated(0.23) benign(0.005) TCGA-CA-6718-01 12 49425230 49425230 G A KMT2D Missense_Mutation p.R4420W 0.44 unknown(0) TCGA-CA-6718-01 12 49437557 49437557 G T KMT2D Missense_Mutation p.F1776L 0.18 probably_damaging(0.912) TCGA-CA-6718-01 12 49854792 49854792 G A SPATS2 5'UTR 0.30 TCGA-CA-6718-01 12 50050222 50050222 C T FMNL3 Missense_Mutation p.E284K 0.40 deleterious(0.01) probably_damaging(0.927) TCGA-CA-6718-01 12 5020688 5020688 C T KCNA1 Silent p.F48F 0.27 TCGA-CA-6718-01 12 5024916 5024916 G A KCNA1 3'UTR 0.32 TCGA-CA-6718-01 12 5027109 5027109 A C KCNA1 3'UTR 0.42 TCGA-CA-6718-01 12 50748515 50748515 C A FAM186A Missense_Mutation p.E700D 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-CA-6718-01 12 50749289 50749289 C A FAM186A Missense_Mutation p.K442N 0.28 deleterious(0.01) possibly_damaging(0.855) TCGA-CA-6718-01 12 50824316 50824316 G T LARP4 Nonsense_Mutation p.E121* 0.28 TCGA-CA-6718-01 12 50829356 50829356 G T LARP4 Nonsense_Mutation p.E162* 0.21 TCGA-CA-6718-01 12 51511512 51511512 C T TFCP2 Missense_Mutation p.R98Q 0.09 tolerated(0.07) benign(0.427) TCGA-CA-6718-01 12 52080233 52080233 G T SCN8A Missense_Mutation p.K159N 0.30 tolerated(0.06) probably_damaging(0.992) TCGA-CA-6718-01 12 52379095 52379095 A G ACVR1B Missense_Mutation p.I408V 0.27 tolerated(0.88) benign(0.253) TCGA-CA-6718-01 12 52825797 52825797 A G KRT75 Missense_Mutation p.L256P 0.25 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 12 53071509 53071509 C A KRT1 Missense_Mutation p.M296I 0.28 deleterious(0.04) benign(0.048) TCGA-CA-6718-01 12 53590408 53590408 C T ITGB7 Silent p.S257S 0.10 TCGA-CA-6718-01 12 53683026 53683026 A G ESPL1 Missense_Mutation p.T1621A 0.12 tolerated(0.5) benign(0.002) TCGA-CA-6718-01 12 54447666 54447666 A G HOXC4 5'UTR 0.33 TCGA-CA-6718-01 12 54769632 54769632 G T ZNF385A Missense_Mutation p.S85Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 12 54858902 54858903 - T GTSF1 Frame_Shift_Ins p.N22Kfs*22 0.19 TCGA-CA-6718-01 12 54936367 54936367 G T NCKAP1L Missense_Mutation p.E1094D 0.30 tolerated(0.12) possibly_damaging(0.593) TCGA-CA-6718-01 12 55024656 55024656 A G LACRT 3'UTR 0.19 TCGA-CA-6718-01 12 55356501 55356501 G T TESPA1 Missense_Mutation p.S394Y 0.23 tolerated_low_confidence(0.11) benign(0.022) TCGA-CA-6718-01 12 55641192 55641192 C A OR6C74 Missense_Mutation p.L41I 0.27 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-CA-6718-01 12 55688126 55688126 T G OR6C6 Missense_Mutation p.E297D 0.20 tolerated_low_confidence(0.1) benign(0.003) TCGA-CA-6718-01 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.24 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-CA-6718-01 12 55759360 55759360 C T OR6C75 Missense_Mutation p.P156S 0.32 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-CA-6718-01 12 55863261 55863261 T G OR6C70 Missense_Mutation p.K221T 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.809) TCGA-CA-6718-01 12 55886964 55886964 T G OR6C68 Missense_Mutation p.I268S 0.16 deleterious_low_confidence(0.01) benign(0.308) TCGA-CA-6718-01 12 56296135 56296135 C A WIBG Nonsense_Mutation p.E46* 0.33 TCGA-CA-6718-01 12 56359877 56359877 G A PMEL 5'Flank 0.29 TCGA-CA-6718-01 12 56601445 56601445 T C RNF41 Missense_Mutation p.Y196C 0.16 tolerated(0.14) benign(0.393) TCGA-CA-6718-01 12 56713740 56713740 T C PAN2 Missense_Mutation p.T956A 0.32 tolerated(0.63) benign(0.014) TCGA-CA-6718-01 12 56726678 56726678 G A PAN2 Silent p.S67S 0.19 TCGA-CA-6718-01 12 56827558 56827558 T G TIMELESS Silent p.R84R 0.29 TCGA-CA-6718-01 12 57114013 57114013 G T NACA Missense_Mutation p.S434Y 0.18 deleterious_low_confidence(0) benign(0.033) TCGA-CA-6718-01 12 57139888 57139901 CTGATTCATCACAG - PRIM1 Frame_Shift_Del p.C170* 0.15 TCGA-CA-6718-01 12 57324155 57324155 C T SDR9C7 Missense_Mutation p.E139K 0.21 deleterious(0.04) possibly_damaging(0.574) TCGA-CA-6718-01 12 57345951 57345951 C A RDH16 Silent p.L272L 0.39 TCGA-CA-6718-01 12 57345954 57345954 C T RDH16 Silent p.A271A 0.38 TCGA-CA-6718-01 12 57861838 57861838 G A GLI1 Missense_Mutation p.R380Q 0.47 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 12 57861880 57861880 C T GLI1 Missense_Mutation p.T394I 0.18 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 12 57867430 57867430 C A ARHGAP9 Missense_Mutation p.K660N 0.21 deleterious(0.04) benign(0.283) TCGA-CA-6718-01 12 57882448 57882448 A C MARS Intron 0.24 TCGA-CA-6718-01 12 58006877 58006877 T G ARHGEF25 Missense_Mutation p.C127G 0.18 tolerated(0.53) benign(0.011) TCGA-CA-6718-01 12 58009321 58009321 C A ARHGEF25 Silent p.L394L 0.33 TCGA-CA-6718-01 12 6140712 6140712 C T VWF Silent p.R906R 0.17 TCGA-CA-6718-01 12 62940740 62940740 C T MON2 Nonsense_Mutation p.R881* 0.25 TCGA-CA-6718-01 12 63541114 63541114 G T AVPR1A 3'UTR 0.33 TCGA-CA-6718-01 12 63976240 63976240 C A DPY19L2 Missense_Mutation p.K557N 0.29 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 12 63987907 63987907 G A DPY19L2 Missense_Mutation p.R514C 0.29 tolerated(0.07) benign(0.035) TCGA-CA-6718-01 12 64041055 64041055 C A DPY19L2 Nonsense_Mutation p.E227* 0.16 TCGA-CA-6718-01 12 64377732 64377732 C T SRGAP1 Nonsense_Mutation p.R25* 0.31 TCGA-CA-6718-01 12 64536298 64536298 T C SRGAP1 Missense_Mutation p.M1035T 0.28 tolerated_low_confidence(0.33) benign(0.007) TCGA-CA-6718-01 12 64668724 64668724 G T C12orf56 Missense_Mutation p.A354D 0.32 deleterious(0.01) probably_damaging(0.984) TCGA-CA-6718-01 12 65133254 65133254 C A GNS Missense_Mutation p.D301Y 0.22 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 12 65146572 65146572 C A GNS Intron 0.25 TCGA-CA-6718-01 12 66641951 66641951 A C IRAK3 Nonstop_Mutation p.*597Yext*16 0.33 TCGA-CA-6718-01 12 66696412 66696412 A G HELB Missense_Mutation p.Q10R 0.11 deleterious(0) unknown(0) TCGA-CA-6718-01 12 66703788 66703788 A C HELB Missense_Mutation p.E360D 0.36 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 12 68056391 68056391 T G DYRK2 3'UTR 0.46 TCGA-CA-6718-01 12 69645014 69645014 C A CPSF6 Missense_Mutation p.L56I 0.11 tolerated(0.56) unknown(0) TCGA-CA-6718-01 12 6974348 6974348 A G USP5 Missense_Mutation p.I807V 0.29 tolerated(0.12) benign(0.074) TCGA-CA-6718-01 12 70037457 70037457 C T BEST3 3'UTR 0.26 TCGA-CA-6718-01 12 70078385 70078385 C A BEST3 Intron 0.19 TCGA-CA-6718-01 12 70735890 70735890 T G CNOT2 Missense_Mutation p.N394K 0.21 deleterious(0.04) benign(0.212) TCGA-CA-6718-01 12 7171659 7171659 G A C1S Silent p.P160P 0.34 TCGA-CA-6718-01 12 7173877 7173877 A C C1S Silent p.A309A 0.16 TCGA-CA-6718-01 12 7174372 7174372 G A C1S Silent p.S339S 0.25 TCGA-CA-6718-01 12 72017889 72017889 A C ZFC3H1 Missense_Mutation p.L1501V 0.38 deleterious(0.01) possibly_damaging(0.473) TCGA-CA-6718-01 12 72030318 72030318 C T ZFC3H1 Silent p.Q684Q 0.21 TCGA-CA-6718-01 12 72863594 72863594 A G TRHDE Missense_Mutation p.I413V 0.32 tolerated(0.4) benign(0.003) TCGA-CA-6718-01 12 7288819 7288819 G A CLSTN3 Missense_Mutation p.E254K 0.18 deleterious(0.01) benign(0.217) TCGA-CA-6718-01 12 73046213 73046213 G T TRHDE Missense_Mutation p.E884D 0.15 deleterious(0.01) possibly_damaging(0.453) TCGA-CA-6718-01 12 73056900 73056900 C T TRHDE Silent p.V1000V 0.23 TCGA-CA-6718-01 12 75669926 75669926 C A CAPS2 3'UTR 0.34 TCGA-CA-6718-01 12 75710124 75710124 C T CAPS2 Missense_Mutation p.D206N 0.32 tolerated(1) benign(0.001) TCGA-CA-6718-01 12 7633836 7633836 C A CD163 Missense_Mutation p.E1088D 0.25 tolerated(0.13) benign(0.025) TCGA-CA-6718-01 12 7656293 7656293 G T CD163 5'UTR 0.46 TCGA-CA-6718-01 12 77220825 77220825 T C ZDHHC17 Silent p.L345L 0.27 TCGA-CA-6718-01 12 78362313 78362313 A C NAV3 Missense_Mutation p.N168H 0.19 deleterious(0) possibly_damaging(0.847) TCGA-CA-6718-01 12 78400329 78400329 G T NAV3 Missense_Mutation p.M337I 0.29 deleterious(0.03) probably_damaging(0.981) TCGA-CA-6718-01 12 78444902 78444902 C A NAV3 Missense_Mutation p.L831I 0.24 tolerated(0.72) benign(0.234) TCGA-CA-6718-01 12 78513722 78513722 G A NAV3 Missense_Mutation p.R1249Q 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6718-01 12 78604454 78604454 G A NAV3 3'Flank 0.42 TCGA-CA-6718-01 12 7869795 7869795 C A DPPA3 3'UTR 0.43 TCGA-CA-6718-01 12 7942307 7942307 G T NANOG Nonsense_Mutation p.E33* 0.34 TCGA-CA-6718-01 12 80226168 80226168 T A PPP1R12A Missense_Mutation p.K197N 0.27 tolerated(0.07) probably_damaging(0.995) TCGA-CA-6718-01 12 80648928 80648928 A C OTOGL Missense_Mutation p.K508T 0.30 tolerated(0.43) possibly_damaging(0.773) TCGA-CA-6718-01 12 80714408 80714408 G T OTOGL Missense_Mutation p.D1328Y 0.12 tolerated(0.37) benign(0.401) TCGA-CA-6718-01 12 80730315 80730315 G A OTOGL Missense_Mutation p.E1566K 0.23 tolerated(0.44) benign(0.389) TCGA-CA-6718-01 12 8083089 8083089 C A SLC2A3 Missense_Mutation p.E220D 0.31 tolerated(0.28) benign(0.03) TCGA-CA-6718-01 12 81046536 81046536 T G PTPRQ Missense_Mutation p.F2009C 0.29 deleterious(0) possibly_damaging(0.754) TCGA-CA-6718-01 12 81503391 81503391 G T ACSS3 Nonsense_Mutation p.E122* 0.25 TCGA-CA-6718-01 12 81655778 81655778 G A PPFIA2 Missense_Mutation p.R1253C 0.46 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-CA-6718-01 12 8212166 8212166 C T C3AR1 Missense_Mutation p.E206K 0.30 tolerated(0.4) benign(0.006) TCGA-CA-6718-01 12 82793168 82793168 T G METTL25 Missense_Mutation p.L376V 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6718-01 12 85408291 85408291 T G TSPAN19 Missense_Mutation p.K241T 0.21 deleterious(0.01) benign(0.086) TCGA-CA-6718-01 12 85431949 85431949 A C LRRIQ1 5'UTR 0.33 TCGA-CA-6718-01 12 85517962 85517962 G T LRRIQ1 Missense_Mutation p.K1224N 0.22 tolerated(0.11) possibly_damaging(0.494) TCGA-CA-6718-01 12 85521717 85521717 C A LRRIQ1 Missense_Mutation p.S1372Y 0.34 tolerated(0.5) benign(0.023) TCGA-CA-6718-01 12 86276043 86276043 G T NTS Nonsense_Mutation p.G135* 0.26 TCGA-CA-6718-01 12 86373040 86373040 A C MGAT4C 3'UTR 0.24 TCGA-CA-6718-01 12 8689821 8689821 G T CLEC4E Missense_Mutation p.Q88K 0.26 deleterious(0.01) benign(0.421) TCGA-CA-6718-01 12 8800543 8800543 T G MFAP5 3'UTR 0.36 TCGA-CA-6718-01 12 88465091 88465091 T G CEP290 Missense_Mutation p.E1997D 0.26 benign(0.423) TCGA-CA-6718-01 12 88487683 88487683 T G CEP290 Missense_Mutation p.K1058T 0.20 probably_damaging(0.969) TCGA-CA-6718-01 12 89917918 89917918 T C GALNT4 Missense_Mutation p.T137A 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6718-01 12 91347882 91347882 G A CCER1 Missense_Mutation p.A213V 0.18 deleterious(0.03) possibly_damaging(0.873) TCGA-CA-6718-01 12 9334572 9334572 T G PZP Missense_Mutation p.K563T 0.10 deleterious(0.01) benign(0.026) TCGA-CA-6718-01 12 9334624 9334624 C A PZP Nonsense_Mutation p.E546* 0.15 TCGA-CA-6718-01 12 94692458 94692458 A G PLXNC1 Silent p.L1375L 0.32 TCGA-CA-6718-01 12 94699024 94699024 T G PLXNC1 Missense_Mutation p.V1557G 0.37 tolerated(0.34) benign(0.165) TCGA-CA-6718-01 12 95365206 95365206 T G NDUFA12 3'UTR 0.31 TCGA-CA-6718-01 12 95879729 95879729 G T METAP2 Nonsense_Mutation p.E134* 0.22 TCGA-CA-6718-01 12 95887876 95887876 T C METAP2 Missense_Mutation p.L158S 0.26 deleterious(0.02) benign(0.439) TCGA-CA-6718-01 12 95927298 95927298 T C USP44 Silent p.V245V 0.23 TCGA-CA-6718-01 12 96180902 96180902 A G NTN4 Missense_Mutation p.F134L 0.09 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 12 96691467 96691467 T C CDK17 Missense_Mutation p.I250V 0.39 tolerated(0.13) probably_damaging(0.995) TCGA-CA-6718-01 12 96717751 96717751 T C CDK17 Silent p.A86A 0.11 TCGA-CA-6718-01 12 97137540 97137540 T G C12orf55 Missense_Mutation p.F2470C 0.29 deleterious(0) benign(0.004) TCGA-CA-6718-01 12 9840630 9840630 T G CLEC2D Missense_Mutation p.F102C 0.38 deleterious(0.01) possibly_damaging(0.772) TCGA-CA-6718-01 12 98927144 98927144 C A TMPO Missense_Mutation p.S370Y 0.37 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CA-6718-01 12 98938307 98938307 G T TMPO Nonsense_Mutation p.E251* 0.33 TCGA-CA-6718-01 12 9906059 9906059 A C CD69 3'UTR 0.19 TCGA-CA-6718-01 12 99064829 99064829 G T APAF1 Nonsense_Mutation p.E525* 0.23 TCGA-CA-6718-01 12 99109286 99109286 G A APAF1 Missense_Mutation p.D1014N 0.24 tolerated(0.09) benign(0.109) TCGA-CA-6718-01 12 99548334 99548334 G T ANKS1B Intron 0.36 TCGA-CA-6718-01 13 101721096 101721096 G T NALCN Missense_Mutation p.F1427L 0.27 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 13 101776978 101776978 C T NALCN Missense_Mutation p.A725T 0.26 tolerated(0.37) benign(0) TCGA-CA-6718-01 13 103309516 103309516 T G TPP2 Missense_Mutation p.F1021L 0.28 deleterious(0.02) benign(0.156) TCGA-CA-6718-01 13 103386320 103386320 C T CCDC168 Missense_Mutation p.G947E 0.26 tolerated(0.36) probably_damaging(0.969) TCGA-CA-6718-01 13 103387877 103387877 C A CCDC168 Missense_Mutation p.R428I 0.30 deleterious(0.01) possibly_damaging(0.506) TCGA-CA-6718-01 13 103436829 103436829 G T KDELC1 3'UTR 0.29 TCGA-CA-6718-01 13 109777557 109777557 G T MYO16 Missense_Mutation p.E1189D 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6718-01 13 111134960 111134960 C T COL4A2 Silent p.F952F 0.33 TCGA-CA-6718-01 13 111143624 111143624 G A COL4A2 Missense_Mutation p.G1131S 0.25 probably_damaging(0.961) TCGA-CA-6718-01 13 111274686 111274686 G T CARKD Missense_Mutation p.R75I 0.17 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 13 113731375 113731375 C T MCF2L Nonsense_Mutation p.R504* 0.23 TCGA-CA-6718-01 13 113854748 113854748 C T PCID2 Missense_Mutation p.R40Q 0.35 tolerated(0.16) benign(0.301) TCGA-CA-6718-01 13 113975924 113975924 C T LAMP1 Silent p.V332V 0.32 TCGA-CA-6718-01 13 115057115 115057115 C T UPF3A Nonsense_Mutation p.R232* 0.29 TCGA-CA-6718-01 13 19748133 19748133 T C TUBA3C Missense_Mutation p.Y408C 0.18 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CA-6718-01 13 20024478 20024478 C A TPTE2 Missense_Mutation p.R270I 0.29 deleterious(0) possibly_damaging(0.872) TCGA-CA-6718-01 13 20399175 20399175 C A ZMYM5 Missense_Mutation p.E484D 0.40 tolerated_low_confidence(0.11) benign(0.016) TCGA-CA-6718-01 13 20411900 20411900 C A ZMYM5 Nonsense_Mutation p.E312* 0.36 TCGA-CA-6718-01 13 20797211 20797211 T C GJB6 Missense_Mutation p.T137A 0.28 deleterious(0.04) benign(0.008) TCGA-CA-6718-01 13 20797467 20797467 G A GJB6 Silent p.F51F 0.32 TCGA-CA-6718-01 13 21383347 21383347 G A XPO4 Silent p.A456A 0.38 TCGA-CA-6718-01 13 21396385 21396385 G A XPO4 Missense_Mutation p.S295F 0.26 deleterious(0) probably_damaging(0.969) TCGA-CA-6718-01 13 21549283 21549283 T C LATS2 Missense_Mutation p.D998G 0.28 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 13 22255191 22255191 A C FGF9 Missense_Mutation p.E96D 0.34 deleterious(0.01) probably_damaging(0.979) TCGA-CA-6718-01 13 23906768 23906768 G A SACS Silent p.I3749I 0.36 TCGA-CA-6718-01 13 23906936 23906936 T A SACS Missense_Mutation p.Q3693H 0.28 probably_damaging(0.99) TCGA-CA-6718-01 13 23909298 23909298 C T SACS Missense_Mutation p.R2906Q 0.21 probably_damaging(0.99) TCGA-CA-6718-01 13 23909772 23909772 G T SACS Missense_Mutation p.S2748Y 0.25 probably_damaging(0.997) TCGA-CA-6718-01 13 23911949 23911949 T C SACS Silent p.K2022K 0.26 TCGA-CA-6718-01 13 23911996 23911996 C A SACS Missense_Mutation p.A2007S 0.31 benign(0.018) TCGA-CA-6718-01 13 24995129 24995129 A C PARP4 3'UTR 0.25 TCGA-CA-6718-01 13 25161461 25161461 C T RP11-556N21.1 RNA 0.14 TCGA-CA-6718-01 13 25352463 25352463 G T RNF17 Missense_Mutation p.K116N 0.22 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-CA-6718-01 13 25373592 25373592 G T RNF17 Nonsense_Mutation p.E487* 0.29 TCGA-CA-6718-01 13 25458547 25458547 G A CENPJ Nonsense_Mutation p.R1178* 0.24 TCGA-CA-6718-01 13 25480958 25480958 A C CENPJ Silent p.T406T 0.36 TCGA-CA-6718-01 13 25671457 25671457 G A PABPC3 Missense_Mutation p.R374H 0.28 deleterious(0.01) possibly_damaging(0.781) TCGA-CA-6718-01 13 25910387 25910387 G T NUPL1 Intron 0.24 TCGA-CA-6718-01 13 26133192 26133192 A G ATP8A2 Missense_Mutation p.T449A 0.27 tolerated(0.94) benign(0.053) TCGA-CA-6718-01 13 28014493 28014493 C A MTIF3 Missense_Mutation p.K31N 0.26 tolerated(0.19) benign(0.035) TCGA-CA-6718-01 13 28141892 28141892 A C LNX2 Missense_Mutation p.I247S 0.27 deleterious(0) possibly_damaging(0.799) TCGA-CA-6718-01 13 28519526 28519526 A C ATP5EP2 Missense_Mutation p.K44Q 0.33 deleterious(0) benign(0.028) TCGA-CA-6718-01 13 29007958 29007958 C A FLT1 Nonsense_Mutation p.E271* 0.25 TCGA-CA-6718-01 13 31531097 31531097 G T TEX26 Nonsense_Mutation p.E134* 0.21 TCGA-CA-6718-01 13 32676102 32676102 A C FRY Missense_Mutation p.E91D 0.39 tolerated(0.16) benign(0.082) TCGA-CA-6718-01 13 32705925 32705925 G A FRY Missense_Mutation p.R278Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 13 32721418 32721418 G T FRY Splice_Site p.X394_splice 0.17 TCGA-CA-6718-01 13 32768339 32768339 A C FRY Silent p.I1217I 0.24 TCGA-CA-6718-01 13 32912969 32912969 G T BRCA2 Nonsense_Mutation p.E1493* 0.27 TCGA-CA-6718-01 13 33703641 33703641 C A STARD13 Missense_Mutation p.E391D 0.26 tolerated(0.13) benign(0.063) TCGA-CA-6718-01 13 33703872 33703872 C T STARD13 Silent p.S314S 0.21 TCGA-CA-6718-01 13 35926329 35926329 G T NBEA Missense_Mutation p.E2016D 0.29 tolerated(0.17) benign(0.049) TCGA-CA-6718-01 13 36124729 36124729 G A NBEA Missense_Mutation p.R2234Q 0.31 deleterious(0) benign(0.122) TCGA-CA-6718-01 13 36367569 36367569 C A DCLK1 Missense_Mutation p.K664N 0.38 deleterious(0.04) possibly_damaging(0.607) TCGA-CA-6718-01 13 36878538 36878538 C T SPG20 Silent p.T655T 0.29 TCGA-CA-6718-01 13 37441423 37441423 C T SMAD9 Silent p.S256S 0.22 TCGA-CA-6718-01 13 37559864 37559864 G T ALG5 Missense_Mutation p.S154Y 0.09 deleterious(0) probably_damaging(0.976) TCGA-CA-6718-01 13 37600951 37600951 G A SUPT20H Missense_Mutation p.S385L 0.25 tolerated(0.64) benign(0.001) TCGA-CA-6718-01 13 37678544 37678544 G T CSNK1A1L Missense_Mutation p.L284I 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.892) TCGA-CA-6718-01 13 38225565 38225565 C T TRPC4 Missense_Mutation p.R639Q 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 13 41706282 41706282 G A KBTBD6 Silent p.F122F 0.24 TCGA-CA-6718-01 13 42301353 42301353 C T VWA8 Missense_Mutation p.G912D 0.42 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 13 42876273 42876273 G T AKAP11 Nonsense_Mutation p.E1131* 0.34 TCGA-CA-6718-01 13 43180776 43180776 G T TNFSF11 Nonsense_Mutation p.E226* 0.37 TCGA-CA-6718-01 13 43930080 43930080 G A ENOX1 Silent p.A266A 0.42 TCGA-CA-6718-01 13 44411349 44411349 T G CCDC122 3'UTR 0.27 TCGA-CA-6718-01 13 45010693 45010693 A C TSC22D1 Intron 0.36 TCGA-CA-6718-01 13 45010694 45010694 G T TSC22D1 Intron 0.30 TCGA-CA-6718-01 13 45515388 45515388 C A NUFIP1 Missense_Mutation p.D481Y 0.20 deleterious(0) probably_damaging(0.972) TCGA-CA-6718-01 13 46658461 46658461 C T CPB2 Silent p.P56P 0.23 TCGA-CA-6718-01 13 46836049 46836049 T G LRRC63 Missense_Mutation p.F411C 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 13 48615171 48615171 T G NUDT15 Missense_Mutation p.Y92D 0.29 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 13 48986285 48986285 G A LPAR6 Missense_Mutation p.S92F 0.36 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 13 50590231 50590231 C A TRIM13 3'Flank 0.30 TCGA-CA-6718-01 13 50594442 50594442 A G KCNRG Missense_Mutation p.H224R 0.28 tolerated(0.57) benign(0.006) TCGA-CA-6718-01 13 52515218 52515218 G A ATP7B Silent p.D1185D 0.18 TCGA-CA-6718-01 13 52639596 52639596 G A NEK5 Missense_Mutation p.R692C 0.30 tolerated(0.12) benign(0) TCGA-CA-6718-01 13 52728227 52728227 C A NEK3 Nonsense_Mutation p.E67* 0.39 TCGA-CA-6718-01 13 52803469 52803469 G A TPTE2P2 RNA 0.15 TCGA-CA-6718-01 13 52971452 52971452 C A THSD1 Missense_Mutation p.K312N 0.28 deleterious(0) benign(0.298) TCGA-CA-6718-01 13 53035869 53035869 C A CKAP2 Missense_Mutation p.S304Y 0.14 tolerated(0.08) probably_damaging(0.964) TCGA-CA-6718-01 13 53048050 53048050 A C CKAP2 Missense_Mutation p.K546Q 0.24 deleterious(0.03) benign(0.165) TCGA-CA-6718-01 13 53617312 53617312 G T OLFM4 Nonsense_Mutation p.E215* 0.48 TCGA-CA-6718-01 13 61103094 61103094 C T TDRD3 Nonsense_Mutation p.R579* 0.26 TCGA-CA-6718-01 13 61986611 61986611 C A PCDH20 Nonsense_Mutation p.E541* 0.26 TCGA-CA-6718-01 13 70371075 70371075 T C KLHL1 Silent p.K478K 0.28 TCGA-CA-6718-01 13 73337650 73337650 C T DIS3 Missense_Mutation p.R689Q 0.28 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 13 75873612 75873612 C A TBC1D4 Nonsense_Mutation p.E1004* 0.20 TCGA-CA-6718-01 13 77574896 77574896 G T CLN5 Missense_Mutation p.R339I 0.20 deleterious(0.03) benign(0.128) TCGA-CA-6718-01 13 77574990 77574990 C A CLN5 Missense_Mutation p.F370L 0.21 deleterious(0.01) probably_damaging(0.919) TCGA-CA-6718-01 13 78318515 78318515 T C SLAIN1 Silent p.Y124Y 0.32 TCGA-CA-6718-01 13 78337284 78337284 C A SLAIN1 Missense_Mutation p.L404I 0.19 deleterious(0) possibly_damaging(0.801) TCGA-CA-6718-01 13 79190575 79190575 C A RNF219 Missense_Mutation p.D441Y 0.37 deleterious(0.01) possibly_damaging(0.629) TCGA-CA-6718-01 13 79946027 79946027 T C RBM26 Silent p.R122R 0.32 TCGA-CA-6718-01 13 88331526 88331526 G T SLITRK5 3'UTR 0.25 TCGA-CA-6718-01 13 93518640 93518640 C A GPC5 Missense_Mutation p.S556Y 0.20 tolerated_low_confidence(1) benign(0.001) TCGA-CA-6718-01 13 95050885 95050885 C A GPC6 Missense_Mutation p.F485L 0.31 deleterious(0.03) benign(0.075) TCGA-CA-6718-01 13 95121180 95121180 C A DCT Nonsense_Mutation p.E139* 0.19 TCGA-CA-6718-01 13 95264627 95264627 T G GPR180 Missense_Mutation p.F163C 0.24 deleterious(0) probably_damaging(0.971) TCGA-CA-6718-01 13 96293904 96293904 G A DZIP1 Missense_Mutation p.A81V 0.40 deleterious(0) possibly_damaging(0.894) TCGA-CA-6718-01 13 96506621 96506621 A G UGGT2 Missense_Mutation p.W1373R 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 13 96547502 96547502 C A UGGT2 Missense_Mutation p.K897N 0.18 tolerated(0.29) possibly_damaging(0.848) TCGA-CA-6718-01 13 99358426 99358426 G T SLC15A1 Missense_Mutation p.L411I 0.28 tolerated(0.66) benign(0.023) TCGA-CA-6718-01 13 99574394 99574394 C T DOCK9 Missense_Mutation p.A165T 0.25 tolerated(1) benign(0.169) TCGA-CA-6718-01 14 100594937 100594937 C T EVL Missense_Mutation p.P190L 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6718-01 14 101526140 101526140 C T MIR154 RNA 0.28 TCGA-CA-6718-01 14 101528419 101528419 T G MIR377 RNA 0.32 TCGA-CA-6718-01 14 102483778 102483778 G T DYNC1H1 Missense_Mutation p.R2705I 0.33 probably_damaging(0.999) TCGA-CA-6718-01 14 104379113 104379113 G T C14orf2 Intron 0.31 TCGA-CA-6718-01 14 105415025 105415025 C T AHNAK2 Missense_Mutation p.E2255K 0.31 benign(0.001) TCGA-CA-6718-01 14 105417932 105417932 C T AHNAK2 Missense_Mutation p.E1286K 0.25 benign(0.013) TCGA-CA-6718-01 14 105421938 105421938 C T AHNAK2 Silent p.K116K 0.52 TCGA-CA-6718-01 14 106208512 106208512 G A IGHG1 Missense_Mutation p.P130S 0.13 deleterious(0.01) possibly_damaging(0.868) TCGA-CA-6718-01 14 106518477 106518477 C A IGHV3-7 Missense_Mutation p.D92Y 0.08 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-CA-6718-01 14 106518494 106518494 C T IGHV3-7 Missense_Mutation p.R86Q 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.483) TCGA-CA-6718-01 14 106733262 106733262 A G IGHV1-24 Missense_Mutation p.I78T 0.21 tolerated(0.77) benign(0.001) TCGA-CA-6718-01 14 106877703 106877703 T G IGHV4-39 Silent p.I97I 0.23 TCGA-CA-6718-01 14 106967188 106967188 T C IGHV1-46 Missense_Mutation p.N71S 0.18 tolerated(0.35) benign(0.005) TCGA-CA-6718-01 14 19378127 19378127 C A OR11H12 Silent p.I178I 0.06 TCGA-CA-6718-01 14 19573140 19573140 G T POTEG Missense_Mutation p.R413I 0.12 deleterious(0.01) possibly_damaging(0.756) TCGA-CA-6718-01 14 20011560 20011560 C A POTEM Missense_Mutation p.R303I 0.14 tolerated(0.1) benign(0.004) TCGA-CA-6718-01 14 20216120 20216120 C A OR4Q3 Missense_Mutation p.F178L 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-CA-6718-01 14 20483291 20483291 C T OR4K14 Missense_Mutation p.R21Q 0.33 tolerated(0.76) benign(0.002) TCGA-CA-6718-01 14 20585613 20585613 C A OR4K17 Missense_Mutation p.F16L 0.28 tolerated_low_confidence(0.11) benign(0) TCGA-CA-6718-01 14 20585619 20585619 C A OR4K17 Silent p.L18L 0.24 TCGA-CA-6718-01 14 20692225 20692225 C A OR11H6 Missense_Mutation p.F119L 0.20 tolerated(0.11) benign(0.126) TCGA-CA-6718-01 14 20760161 20760161 C T TTC5 Missense_Mutation p.R395Q 0.23 tolerated(0.6) benign(0) TCGA-CA-6718-01 14 20770012 20770012 T C TTC5 Missense_Mutation p.Q55R 0.30 tolerated(0.44) benign(0.001) TCGA-CA-6718-01 14 20779716 20779716 C A CCNB1IP1 Missense_Mutation p.R276I 0.19 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-CA-6718-01 14 20811781 20811781 G T PARP2 5'UTR 0.17 TCGA-CA-6718-01 14 20915627 20915627 G A OSGEP Missense_Mutation p.R308W 0.14 deleterious(0) benign(0.339) TCGA-CA-6718-01 14 21052087 21052087 C T RNASE11 Missense_Mutation p.V183M 0.25 deleterious(0.02) possibly_damaging(0.766) TCGA-CA-6718-01 14 21108947 21108947 C A OR6S1 Nonsense_Mutation p.E302* 0.23 TCGA-CA-6718-01 14 21109514 21109514 C T OR6S1 Missense_Mutation p.E113K 0.24 deleterious(0) benign(0.194) TCGA-CA-6718-01 14 21789447 21789447 G T RPGRIP1 Missense_Mutation p.K499N 0.32 tolerated(0.29) benign(0.005) TCGA-CA-6718-01 14 21794173 21794173 G A RPGRIP1 Missense_Mutation p.A851T 0.08 deleterious(0.05) possibly_damaging(0.871) TCGA-CA-6718-01 14 21883117 21883117 G T CHD8 Missense_Mutation p.F668L 0.29 deleterious(0.01) possibly_damaging(0.468) TCGA-CA-6718-01 14 21929445 21929445 A G RAB2B Silent p.I187I 0.14 TCGA-CA-6718-01 14 21961217 21961217 G A TOX4 Missense_Mutation p.R481Q 0.33 tolerated(0.2) possibly_damaging(0.885) TCGA-CA-6718-01 14 21993557 21993557 G T SALL2 Missense_Mutation p.S102Y 0.20 deleterious(0.01) benign(0.229) TCGA-CA-6718-01 14 23512566 23512566 G A PSMB11 3'UTR 0.22 TCGA-CA-6718-01 14 23871812 23871812 C A MYH6 Splice_Site p.X335_splice 0.40 TCGA-CA-6718-01 14 23882042 23882042 G A MYH7 3'UTR 0.33 TCGA-CA-6718-01 14 23884294 23884294 C A MYH7 Missense_Mutation p.E1823D 0.31 deleterious(0.04) benign(0.306) TCGA-CA-6718-01 14 23886521 23886521 C T MYH7 Missense_Mutation p.A1454T 0.24 deleterious(0.04) benign(0.208) TCGA-CA-6718-01 14 24586174 24586174 C A DCAF11 Missense_Mutation p.F68L 0.31 tolerated(1) benign(0) TCGA-CA-6718-01 14 24772293 24772293 T G NOP9 Missense_Mutation p.F386C 0.28 deleterious(0) possibly_damaging(0.535) TCGA-CA-6718-01 14 24786587 24786587 A G LTB4R 3'UTR 0.33 TCGA-CA-6718-01 14 30135397 30135397 C A PRKD1 Missense_Mutation p.D141Y 0.15 deleterious(0.02) probably_damaging(0.987) TCGA-CA-6718-01 14 31177200 31177200 T G SCFD1 Missense_Mutation p.L520V 0.13 deleterious(0.01) benign(0.043) TCGA-CA-6718-01 14 31425420 31425420 C A STRN3 Missense_Mutation p.R104I 0.35 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 14 32561349 32561349 G T ARHGAP5 Nonsense_Mutation p.E492* 0.30 TCGA-CA-6718-01 14 33014898 33014898 G T AKAP6 Nonsense_Mutation p.E347* 0.29 TCGA-CA-6718-01 14 33204981 33204981 G T AKAP6 Nonsense_Mutation p.E1089* 0.23 TCGA-CA-6718-01 14 34204527 34204527 T G NPAS3 Missense_Mutation p.S281A 0.18 tolerated(0.07) benign(0.007) TCGA-CA-6718-01 14 35231086 35231086 A C BAZ1A Missense_Mutation p.F1374V 0.24 tolerated_low_confidence(0.45) benign(0.001) TCGA-CA-6718-01 14 35231152 35231152 G A BAZ1A Missense_Mutation p.L1352F 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.811) TCGA-CA-6718-01 14 36005691 36005691 A C INSM2 3'UTR 0.40 TCGA-CA-6718-01 14 36154259 36154259 A G RALGAPA1 Silent p.I884I 0.30 TCGA-CA-6718-01 14 37149854 37149854 C A SLC25A21 3'UTR 0.28 TCGA-CA-6718-01 14 38311396 38311396 A C TTC6 Missense_Mutation p.N1854T 0.26 tolerated(0.07) possibly_damaging(0.839) TCGA-CA-6718-01 14 38724541 38724541 G A CLEC14A Silent p.D229D 0.42 TCGA-CA-6718-01 14 39716230 39716230 A C MIA2 Missense_Mutation p.K151T 0.17 tolerated(0.3) benign(0.023) TCGA-CA-6718-01 14 39716532 39716532 C T MIA2 Missense_Mutation p.R252W 0.39 deleterious(0.02) possibly_damaging(0.707) TCGA-CA-6718-01 14 39717065 39717065 G A MIA2 Silent p.T429T 0.24 TCGA-CA-6718-01 14 39819305 39819305 G T CTAGE5 Missense_Mutation p.R756I 0.37 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 14 42360920 42360920 C T LRFN5 Missense_Mutation p.S618L 0.28 tolerated_low_confidence(0.21) benign(0.073) TCGA-CA-6718-01 14 44976210 44976210 C A FSCB 5'UTR 0.07 TCGA-CA-6718-01 14 45432197 45432197 G T FAM179B Missense_Mutation p.E191D 0.23 tolerated_low_confidence(0.33) benign(0.021) TCGA-CA-6718-01 14 45433322 45433322 G T FAM179B Missense_Mutation p.M566I 0.24 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 14 45475374 45475374 G T FAM179B Missense_Mutation p.K936N 0.29 tolerated(0.4) benign(0.013) TCGA-CA-6718-01 14 45624588 45624588 A C FANCM Missense_Mutation p.K441T 0.10 deleterious(0) benign(0.017) TCGA-CA-6718-01 14 45644987 45644987 A C FANCM Missense_Mutation p.E1010D 0.26 tolerated(0.11) benign(0.025) TCGA-CA-6718-01 14 45645822 45645822 T G FANCM Missense_Mutation p.F1289V 0.18 tolerated(0.51) benign(0.003) TCGA-CA-6718-01 14 47120968 47120968 G A RPL10L 5'UTR 0.50 TCGA-CA-6718-01 14 50090000 50090000 C A MGAT2 3'UTR 0.27 TCGA-CA-6718-01 14 51087376 51087376 G A ATL1 Missense_Mutation p.E308K 0.25 tolerated(0.17) benign(0.034) TCGA-CA-6718-01 14 51239751 51239751 G T NIN Missense_Mutation p.F243L 0.34 deleterious(0.02) possibly_damaging(0.672) TCGA-CA-6718-01 14 51561435 51561435 C T TRIM9 Missense_Mutation p.D75N 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 14 53004331 53004331 T G TXNDC16 Missense_Mutation p.K101N 0.24 deleterious(0.02) benign(0.062) TCGA-CA-6718-01 14 53331244 53331244 G T FERMT2 Missense_Mutation p.L493I 0.24 tolerated(0.19) benign(0.024) TCGA-CA-6718-01 14 55429791 55429791 G A WDHD1 Missense_Mutation p.R804W 0.26 deleterious(0) probably_damaging(0.949) TCGA-CA-6718-01 14 55512445 55512445 T G SOCS4 3'UTR 0.21 TCGA-CA-6718-01 14 55513199 55513199 G A SOCS4 3'UTR 0.35 TCGA-CA-6718-01 14 55514590 55514590 T G SOCS4 3'UTR 0.35 TCGA-CA-6718-01 14 55818088 55818088 A G FBXO34 Missense_Mutation p.K327R 0.35 tolerated(0.16) benign(0.03) TCGA-CA-6718-01 14 57114128 57114128 G A TMEM260 Silent p.P679P 0.38 TCGA-CA-6718-01 14 58030816 58030816 G T SLC35F4 3'UTR 0.23 TCGA-CA-6718-01 14 58036515 58036515 G A SLC35F4 Silent p.L409L 0.24 TCGA-CA-6718-01 14 58605805 58605805 G A C14orf37 Missense_Mutation p.S91L 0.22 tolerated(0.23) possibly_damaging(0.519) TCGA-CA-6718-01 14 58896107 58896107 A C KIAA0586 Missense_Mutation p.N88H 0.24 deleterious(0.01) probably_damaging(0.946) TCGA-CA-6718-01 14 58965619 58965619 A C KIAA0586 Missense_Mutation p.Q1423P 0.16 tolerated(0.1) benign(0.002) TCGA-CA-6718-01 14 59113940 59113940 T G DACT1 3'Flank 0.29 TCGA-CA-6718-01 14 59930653 59930653 C T GPR135 Missense_Mutation p.R431Q 0.43 deleterious(0.02) benign(0.231) TCGA-CA-6718-01 14 60074061 60074061 G A RTN1 Missense_Mutation p.R639C 0.41 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 14 60212743 60212743 G T RTN1 Missense_Mutation p.P233H 0.28 deleterious(0.01) benign(0.264) TCGA-CA-6718-01 14 60212818 60212818 T C RTN1 Missense_Mutation p.Q208R 0.24 tolerated(0.14) benign(0.006) TCGA-CA-6718-01 14 60574495 60574495 C A PCNXL4 Intron 0.28 TCGA-CA-6718-01 14 60611710 60611710 T C DHRS7 Missense_Mutation p.K332E 0.26 tolerated_low_confidence(0.48) benign(0.055) TCGA-CA-6718-01 14 60936271 60936271 C A C14orf39 Nonsense_Mutation p.E219* 0.27 TCGA-CA-6718-01 14 61115564 61115564 A C SIX1 Missense_Mutation p.F115C 0.36 deleterious(0) probably_damaging(0.979) TCGA-CA-6718-01 14 61180077 61180077 G T SIX4 3'UTR 0.36 TCGA-CA-6718-01 14 62199167 62199167 G T HIF1A Nonsense_Mutation p.E293* 0.20 TCGA-CA-6718-01 14 62547653 62547653 G T SYT16 Missense_Mutation p.Q365H 0.27 deleterious(0.03) benign(0.41) TCGA-CA-6718-01 14 64460618 64460618 A C SYNE2 Missense_Mutation p.K904N 0.30 probably_damaging(0.999) TCGA-CA-6718-01 14 64519713 64519713 G T SYNE2 Nonsense_Mutation p.E3028* 0.23 TCGA-CA-6718-01 14 64560100 64560100 G T SYNE2 Nonsense_Mutation p.E4004* 0.13 TCGA-CA-6718-01 14 64940595 64940595 T G AKAP5 3'UTR 0.24 TCGA-CA-6718-01 14 66209075 66209075 C T FUT8 Nonsense_Mutation p.R559* 0.44 TCGA-CA-6718-01 14 67787792 67787792 G A MPP5 Missense_Mutation p.R519Q 0.21 deleterious(0.02) probably_damaging(0.945) TCGA-CA-6718-01 14 68053907 68053907 C A PLEKHH1 Missense_Mutation p.F1350L 0.27 tolerated_low_confidence(1) benign(0.003) TCGA-CA-6718-01 14 68191892 68191892 G T RDH12 Missense_Mutation p.K88N 0.27 tolerated(0.15) possibly_damaging(0.543) TCGA-CA-6718-01 14 68353757 68353757 G T RAD51B Nonsense_Mutation p.E198* 0.21 TCGA-CA-6718-01 14 69865972 69865972 G T SLC39A9 5'UTR 0.14 TCGA-CA-6718-01 14 69990983 69990983 G T PLEKHD1 Nonsense_Mutation p.E230* 0.24 TCGA-CA-6718-01 14 70418967 70418967 G A SMOC1 Missense_Mutation p.R71Q 0.27 deleterious(0.01) possibly_damaging(0.667) TCGA-CA-6718-01 14 70634647 70634647 G A SLC8A3 Silent p.L165L 0.26 TCGA-CA-6718-01 14 70712784 70712784 C A ADAM21P1 RNA 0.17 TCGA-CA-6718-01 14 70924267 70924267 C T ADAM21 Silent p.L17L 0.36 TCGA-CA-6718-01 14 70925764 70925764 G T ADAM21 Missense_Mutation p.E516D 0.16 tolerated(0.1) benign(0.012) TCGA-CA-6718-01 14 70926359 70926359 G T ADAM21 Nonsense_Mutation p.E715* 0.27 TCGA-CA-6718-01 14 70989311 70989311 C A ADAM20 Nonsense_Mutation p.E772* 0.23 TCGA-CA-6718-01 14 70990397 70990397 C T ADAM20 Missense_Mutation p.E410K 0.25 deleterious(0.04) benign(0.024) TCGA-CA-6718-01 14 71134317 71134317 G A TTC9 Missense_Mutation p.R148Q 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6718-01 14 72431580 72431580 C T RGS6 Silent p.I24I 0.33 TCGA-CA-6718-01 14 73945437 73945437 C A HEATR4 Missense_Mutation p.E985D 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6718-01 14 74206244 74206244 C T ELMSAN1 Silent p.P156P 0.28 TCGA-CA-6718-01 14 74975603 74975603 C A LTBP2 Missense_Mutation p.K1152N 0.24 tolerated(0.23) possibly_damaging(0.845) TCGA-CA-6718-01 14 75747586 75747586 G A FOS Missense_Mutation p.R201Q 0.28 tolerated(0.69) benign(0.025) TCGA-CA-6718-01 14 76091060 76091060 A C FLVCR2 Missense_Mutation p.K306T 0.30 tolerated(0.33) benign(0.038) TCGA-CA-6718-01 14 77686385 77686385 G T TMEM63C Missense_Mutation p.K89N 0.12 deleterious(0.04) benign(0.443) TCGA-CA-6718-01 14 77706033 77706033 C T TMEM63C Silent p.R298R 0.19 TCGA-CA-6718-01 14 77844809 77844809 C A SAMD15 Missense_Mutation p.L350I 0.40 tolerated(0.16) benign(0.261) TCGA-CA-6718-01 14 78174210 78174210 G T ALKBH1 Missense_Mutation p.F46L 0.27 tolerated(0.15) probably_damaging(0.998) TCGA-CA-6718-01 14 79746631 79746631 G A NRXN3 Intron 0.33 TCGA-CA-6718-01 14 80328329 80328329 G A NRXN3 3'UTR 0.24 TCGA-CA-6718-01 14 81965787 81965787 A G SEL1L Intron 0.38 TCGA-CA-6718-01 14 86090333 86090333 A C FLRT2 3'UTR 0.26 TCGA-CA-6718-01 14 86092414 86092414 A G FLRT2 3'UTR 0.22 TCGA-CA-6718-01 14 88789166 88789166 G T KCNK10 5'UTR 0.08 TCGA-CA-6718-01 14 88895775 88895775 T C SPATA7 Silent p.I332I 0.22 TCGA-CA-6718-01 14 89083071 89083071 A C EML5 Missense_Mutation p.F1932C 0.29 tolerated(0.05) possibly_damaging(0.885) TCGA-CA-6718-01 14 90783074 90783074 C A NRDE2 Missense_Mutation p.E85D 0.25 tolerated(0.23) benign(0.276) TCGA-CA-6718-01 14 90784395 90784395 T G NRDE2 Missense_Mutation p.T43P 0.36 tolerated(0.18) benign(0.004) TCGA-CA-6718-01 14 92055963 92055963 A C CATSPERB Missense_Mutation p.I957M 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-CA-6718-01 14 92548704 92548704 C A ATXN3 Nonsense_Mutation p.E239* 0.20 TCGA-CA-6718-01 14 92622876 92622876 A C CPSF2 Missense_Mutation p.K499T 0.29 tolerated(0.25) benign(0.22) TCGA-CA-6718-01 14 92959939 92959939 C T SLC24A4 Silent p.F612F 0.38 TCGA-CA-6718-01 14 94046559 94046559 C A UNC79 Missense_Mutation p.S656Y 0.26 tolerated(0.27) possibly_damaging(0.865) TCGA-CA-6718-01 14 94097188 94097188 G T UNC79 Nonsense_Mutation p.E1707* 0.24 TCGA-CA-6718-01 14 94527412 94527412 C A DDX24 Missense_Mutation p.G415V 0.21 deleterious(0) probably_damaging(0.943) TCGA-CA-6718-01 14 94708199 94708199 G T PPP4R4 Nonsense_Mutation p.E351* 0.18 TCGA-CA-6718-01 14 94935583 94935583 C T SERPINA9 Missense_Mutation p.A217T 0.42 tolerated(0.13) benign(0.016) TCGA-CA-6718-01 14 94935683 94935683 G T SERPINA9 Missense_Mutation p.F183L 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6718-01 14 94964108 94964108 G T SERPINA12 Missense_Mutation p.F209L 0.27 deleterious(0.01) possibly_damaging(0.844) TCGA-CA-6718-01 14 95035809 95035809 C A SERPINA4 Missense_Mutation p.F387L 0.19 tolerated(0.19) benign(0.148) TCGA-CA-6718-01 14 95053897 95053897 C A SERPINA5 Missense_Mutation p.F66L 0.42 deleterious(0.03) possibly_damaging(0.558) TCGA-CA-6718-01 14 95054134 95054134 C T SERPINA5 Silent p.F145F 0.24 TCGA-CA-6718-01 14 95599828 95599828 C A DICER1 5'UTR 0.24 TCGA-CA-6718-01 14 95932292 95932292 G T SYNE3 Nonsense_Mutation p.Y201* 0.41 TCGA-CA-6718-01 14 96769453 96769453 T G ATG2B Missense_Mutation p.K1661T 0.36 deleterious(0) probably_damaging(0.916) TCGA-CA-6718-01 14 96783538 96783538 G T ATG2B Missense_Mutation p.L1052I 0.34 deleterious(0.03) benign(0.444) TCGA-CA-6718-01 14 97031357 97031357 G T PAPOLA Missense_Mutation p.K736N 0.17 deleterious(0) possibly_damaging(0.617) TCGA-CA-6718-01 14 97321615 97321615 A C VRK1 Missense_Mutation p.K211Q 0.24 deleterious(0) possibly_damaging(0.484) TCGA-CA-6718-01 15 100269825 100269825 C A LYSMD4 Nonsense_Mutation p.E133* 0.30 TCGA-CA-6718-01 15 101188569 101188569 C T ASB7 Nonsense_Mutation p.R287* 0.30 TCGA-CA-6718-01 15 102358672 102358672 C T OR4F15 Missense_Mutation p.R95W 0.32 tolerated_low_confidence(0.15) benign(0) TCGA-CA-6718-01 15 20657775 20657775 C T HERC2P3 RNA 0.15 TCGA-CA-6718-01 15 22369068 22369068 C T OR4M2 Nonsense_Mutation p.R165* 0.15 TCGA-CA-6718-01 15 22873355 22873355 C T TUBGCP5 3'UTR 0.21 TCGA-CA-6718-01 15 22998434 22998434 A G CYFIP1 Silent p.R1042R 0.35 TCGA-CA-6718-01 15 23310140 23310140 G A HERC2P2 RNA 0.33 TCGA-CA-6718-01 15 24924224 24924224 A C NPAP1 Silent p.P1070P 0.28 TCGA-CA-6718-01 15 25599764 25599764 G A UBE3A Missense_Mutation p.R734W 0.26 deleterious(0) probably_damaging(0.946) TCGA-CA-6718-01 15 25616394 25616394 C T UBE3A Silent p.A312A 0.30 TCGA-CA-6718-01 15 25616905 25616905 T C UBE3A Missense_Mutation p.E142G 0.19 tolerated(0.15) benign(0.005) TCGA-CA-6718-01 15 25620682 25620682 C T UBE3A Silent p.S100S 0.30 TCGA-CA-6718-01 15 25958939 25958939 G A ATP10A Silent p.F742F 0.12 TCGA-CA-6718-01 15 27725834 27725834 A C GABRG3 Missense_Mutation p.K205Q 0.31 tolerated(0.12) benign(0.022) TCGA-CA-6718-01 15 28200318 28200318 C A OCA2 Nonsense_Mutation p.E610* 0.17 TCGA-CA-6718-01 15 28413595 28413595 G A HERC2 Silent p.I3457I 0.24 TCGA-CA-6718-01 15 28436181 28436181 A C HERC2 Missense_Mutation p.L2860R 0.17 possibly_damaging(0.899) TCGA-CA-6718-01 15 30003033 30003033 A G TJP1 Splice_Site p.X1458_splice 0.26 TCGA-CA-6718-01 15 30054602 30054602 T G TJP1 Missense_Mutation p.E210A 0.17 deleterious(0.01) possibly_damaging(0.515) TCGA-CA-6718-01 15 31197830 31197830 A C FAN1 Missense_Mutation p.K322Q 0.33 tolerated(0.35) benign(0.003) TCGA-CA-6718-01 15 31355491 31355491 C A TRPM1 Silent p.L282L 0.19 TCGA-CA-6718-01 15 32819017 32819017 T G RP11-632K20.7 RNA 0.35 TCGA-CA-6718-01 15 33952397 33952397 G T RYR3 Splice_Site p.X1466_splice 0.17 TCGA-CA-6718-01 15 34129121 34129121 C T RYR3 Silent p.I3861I 0.09 TCGA-CA-6718-01 15 34130301 34130301 G T RYR3 Missense_Mutation p.K4040N 0.29 benign(0.131) TCGA-CA-6718-01 15 34130808 34130808 C A RYR3 Silent p.I4209I 0.20 TCGA-CA-6718-01 15 34163232 34163232 C T AVEN Splice_Site p.X173_splice 0.28 TCGA-CA-6718-01 15 34434463 34434463 G A KATNBL1 3'UTR 0.31 TCGA-CA-6718-01 15 34438974 34438974 A C KATNBL1 Missense_Mutation p.I259S 0.24 tolerated(0.74) benign(0.077) TCGA-CA-6718-01 15 37001470 37001470 C A C15orf41 Missense_Mutation p.F197L 0.25 tolerated(0.19) benign(0.149) TCGA-CA-6718-01 15 38786860 38786860 G T RASGRP1 Missense_Mutation p.S661Y 0.29 deleterious(0) possibly_damaging(0.805) TCGA-CA-6718-01 15 38798086 38798086 G T RASGRP1 Silent p.I426I 0.26 TCGA-CA-6718-01 15 39546554 39546554 T G C15orf54 3'UTR 0.36 TCGA-CA-6718-01 15 40914007 40914007 A C CASC5 Missense_Mutation p.E541D 0.22 deleterious(0.04) possibly_damaging(0.493) TCGA-CA-6718-01 15 40915235 40915235 G T CASC5 Nonsense_Mutation p.E951* 0.33 TCGA-CA-6718-01 15 41348900 41348900 G T INO80 Missense_Mutation p.R664S 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 15 41483663 41483663 C A EXD1 Nonsense_Mutation p.E223* 0.35 TCGA-CA-6718-01 15 42021428 42021428 C T MGA Nonsense_Mutation p.R1242* 0.68 TCGA-CA-6718-01 15 42619617 42619617 C A GANC Missense_Mutation p.L493I 0.15 possibly_damaging(0.854) TCGA-CA-6718-01 15 42730815 42730815 G T ZNF106 Missense_Mutation p.S1509Y 0.32 deleterious(0.01) possibly_damaging(0.855) TCGA-CA-6718-01 15 43494122 43494122 C T EPB42 Silent p.Q641Q 0.38 TCGA-CA-6718-01 15 43507332 43507332 A C EPB42 Missense_Mutation p.L161V 0.27 deleterious(0) possibly_damaging(0.836) TCGA-CA-6718-01 15 43635264 43635264 T G ADAL Missense_Mutation p.I139S 0.10 deleterious(0) possibly_damaging(0.905) TCGA-CA-6718-01 15 43653584 43653584 A C ZSCAN29 Missense_Mutation p.L749R 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 15 43814514 43814514 A C MAP1A Missense_Mutation p.E281D 0.44 possibly_damaging(0.879) TCGA-CA-6718-01 15 43818085 43818085 G A MAP1A Missense_Mutation p.E1472K 0.34 probably_damaging(0.991) TCGA-CA-6718-01 15 43818234 43818234 A C MAP1A Missense_Mutation p.R1521S 0.24 benign(0.019) TCGA-CA-6718-01 15 44063321 44063321 G T PDIA3 Missense_Mutation p.D475Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 15 44063354 44063354 A C PDIA3 Missense_Mutation p.N486H 0.11 tolerated(0.25) benign(0.002) TCGA-CA-6718-01 15 44063386 44063386 G T PDIA3 Missense_Mutation p.K496N 0.33 deleterious(0.02) possibly_damaging(0.72) TCGA-CA-6718-01 15 44961988 44961988 C A PATL2 Missense_Mutation p.G288V 0.42 deleterious(0.01) probably_damaging(1) TCGA-CA-6718-01 15 45007681 45007681 T G B2M Missense_Mutation p.L43R 0.43 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 15 45007891 45007891 T G B2M Missense_Mutation p.V113G 0.43 deleterious(0) probably_damaging(0.939) TCGA-CA-6718-01 15 48521491 48521491 T C SLC12A1 Missense_Mutation p.V277A 0.24 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 15 49420181 49420181 G T COPS2 Missense_Mutation p.S440Y 0.29 deleterious(0) benign(0.287) TCGA-CA-6718-01 15 49431799 49431799 G T COPS2 Silent p.R100R 0.28 TCGA-CA-6718-01 15 49716708 49716708 C T FGF7 Nonsense_Mutation p.R72* 0.23 TCGA-CA-6718-01 15 50862140 50862140 T G TRPM7 Missense_Mutation p.K1804T 0.29 deleterious(0.04) benign(0.125) TCGA-CA-6718-01 15 50866669 50866669 C A TRPM7 Nonsense_Mutation p.E1704* 0.32 TCGA-CA-6718-01 15 51028310 51028310 C T SPPL2A Missense_Mutation p.R307Q 0.31 deleterious(0) benign(0.163) TCGA-CA-6718-01 15 51240354 51240354 G T AP4E1 Missense_Mutation p.E438D 0.33 tolerated(0.07) benign(0.118) TCGA-CA-6718-01 15 51290054 51290054 G T AP4E1 Nonsense_Mutation p.E960* 0.32 TCGA-CA-6718-01 15 51696581 51696581 T C GLDN Missense_Mutation p.V429A 0.27 tolerated(0.6) benign(0.162) TCGA-CA-6718-01 15 51696833 51696833 C T GLDN Missense_Mutation p.S513F 0.33 deleterious(0.01) probably_damaging(0.964) TCGA-CA-6718-01 15 51766772 51766772 T G DMXL2 Missense_Mutation p.N2328H 0.24 tolerated(0.23) possibly_damaging(0.878) TCGA-CA-6718-01 15 51790953 51790953 C A DMXL2 Nonsense_Mutation p.E1490* 0.28 TCGA-CA-6718-01 15 51795175 51795175 C A DMXL2 Missense_Mutation p.K940N 0.33 tolerated(0.52) benign(0.088) TCGA-CA-6718-01 15 52017126 52017126 G A LYSMD2 Missense_Mutation p.L156F 0.33 tolerated(0.71) benign(0.003) TCGA-CA-6718-01 15 52065965 52065965 A G TMOD2 Missense_Mutation p.T114A 0.26 deleterious(0.05) benign(0.013) TCGA-CA-6718-01 15 52517715 52517715 G A MYO5C Silent p.F1074F 0.35 TCGA-CA-6718-01 15 53889318 53889318 C A WDR72 Nonsense_Mutation p.E1036* 0.30 TCGA-CA-6718-01 15 53908010 53908010 A C WDR72 Missense_Mutation p.F798C 0.16 deleterious(0) possibly_damaging(0.806) TCGA-CA-6718-01 15 54005064 54005064 C A WDR72 Nonsense_Mutation p.E206* 0.23 TCGA-CA-6718-01 15 54307319 54307319 C A UNC13C Missense_Mutation p.S740Y 0.10 deleterious_low_confidence(0.01) benign(0.068) TCGA-CA-6718-01 15 54529831 54529831 G A UNC13C Silent p.R1057R 0.25 TCGA-CA-6718-01 15 54847642 54847642 C T UNC13C Nonsense_Mutation p.R1964* 0.18 TCGA-CA-6718-01 15 55474401 55474401 C A RSL24D1 Missense_Mutation p.E147D 0.31 tolerated(0.33) benign(0) TCGA-CA-6718-01 15 55677900 55677900 C A CCPG1 Nonsense_Mutation p.E25* 0.34 TCGA-CA-6718-01 15 55930812 55930812 C T PRTG Missense_Mutation p.R796Q 0.40 tolerated(0.71) probably_damaging(1) TCGA-CA-6718-01 15 56126481 56126481 A C NEDD4 Missense_Mutation p.F1103V 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6718-01 15 56680710 56680710 G T TEX9 Nonsense_Mutation p.E102* 0.29 TCGA-CA-6718-01 15 57565345 57565345 C A TCF12 Missense_Mutation p.F621L 0.23 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 15 57953666 57953666 A C GCOM1 Missense_Mutation p.K380Q 0.32 tolerated(0.39) probably_damaging(0.986) TCGA-CA-6718-01 15 58458912 58458912 G A AQP9 Missense_Mutation p.R51Q 0.30 tolerated(0.34) probably_damaging(0.948) TCGA-CA-6718-01 15 58925405 58925405 A C ADAM10 Missense_Mutation p.F389C 0.23 deleterious(0) probably_damaging(0.993) TCGA-CA-6718-01 15 59323280 59323280 A C RNF111 Missense_Mutation p.K87Q 0.13 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-CA-6718-01 15 59500618 59500618 C A LDHAL6B 3'UTR 0.29 TCGA-CA-6718-01 15 60747266 60747266 A C NARG2 Missense_Mutation p.N293K 0.14 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 15 62316032 62316032 T G VPS13C Missense_Mutation p.K154T 0.21 tolerated(0.07) benign(0.067) TCGA-CA-6718-01 15 62362748 62362748 A C C2CD4A 3'UTR 0.07 TCGA-CA-6718-01 15 62999433 62999433 A C TLN2 Missense_Mutation p.Q718P 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 15 63433478 63433478 G T LACTB Splice_Site p.X373_splice 0.20 TCGA-CA-6718-01 15 64966202 64966202 C A ZNF609 Silent p.V383V 0.21 TCGA-CA-6718-01 15 65559006 65559006 A C PARP16 Missense_Mutation p.F138C 0.35 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 15 65687537 65687537 G A IGDCC4 Missense_Mutation p.R491W 0.28 deleterious(0.01) possibly_damaging(0.901) TCGA-CA-6718-01 15 66610924 66610924 C T DIS3L Nonsense_Mutation p.R378* 0.13 TCGA-CA-6718-01 15 66844182 66844182 T G LCTL Missense_Mutation p.N448H 0.29 deleterious(0) probably_damaging(0.988) TCGA-CA-6718-01 15 66845492 66845492 G T LCTL Missense_Mutation p.H343N 0.16 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 15 67664697 67664697 G A IQCH Silent p.T334T 0.27 TCGA-CA-6718-01 15 68126105 68126105 C A SKOR1 Missense_Mutation p.F846L 0.24 deleterious_low_confidence(0.02) benign(0.294) TCGA-CA-6718-01 15 68649617 68649617 G A ITGA11 Silent p.G207G 0.25 TCGA-CA-6718-01 15 70976723 70976723 T G UACA Missense_Mutation p.N222T 0.17 tolerated(0.07) probably_damaging(0.938) TCGA-CA-6718-01 15 71329531 71329531 C T LRRC49 Missense_Mutation p.R578W 0.28 deleterious(0.02) possibly_damaging(0.54) TCGA-CA-6718-01 15 72172687 72172687 G T MYO9A Missense_Mutation p.L1871I 0.31 tolerated(0.1) probably_damaging(0.997) TCGA-CA-6718-01 15 72534528 72534528 G A PARP6 Missense_Mutation p.R559W 0.13 deleterious(0) probably_damaging(0.971) TCGA-CA-6718-01 15 74635342 74635342 C A CYP11A1 Missense_Mutation p.E322D 0.14 tolerated(0.06) possibly_damaging(0.731) TCGA-CA-6718-01 15 75648233 75648233 C A MAN2C1 3'UTR 0.33 TCGA-CA-6718-01 15 76073166 76073166 G T RN7SL319P 5'Flank 0.18 TCGA-CA-6718-01 15 77085596 77085596 T G SCAPER Intron 0.30 TCGA-CA-6718-01 15 78211251 78211251 C A RP11-114H24.7 Intron 0.23 TCGA-CA-6718-01 15 78780590 78780590 T G IREB2 Silent p.V621V 0.27 TCGA-CA-6718-01 15 79217763 79217763 A G CTSH Missense_Mutation p.V240A 0.15 tolerated(0.84) possibly_damaging(0.49) TCGA-CA-6718-01 15 79277481 79277481 G A RASGRF1 Silent p.I1110I 0.31 TCGA-CA-6718-01 15 79317729 79317729 C T RASGRF1 Missense_Mutation p.R490Q 0.47 deleterious(0) probably_damaging(0.972) TCGA-CA-6718-01 15 79587269 79587269 T G ANKRD34C 3'UTR 0.30 TCGA-CA-6718-01 15 79587407 79587407 G T ANKRD34C 3'UTR 0.28 TCGA-CA-6718-01 15 79760717 79760717 G T KIAA1024 Missense_Mutation p.M914I 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6718-01 15 80191328 80191328 C T ST20 Missense_Mutation p.G62D 0.27 deleterious_low_confidence(0.01) benign(0.047) TCGA-CA-6718-01 15 81134386 81134386 C T KIAA1199 Intron 0.32 TCGA-CA-6718-01 15 82444223 82444223 C A EFTUD1 Nonsense_Mutation p.E858* 0.31 TCGA-CA-6718-01 15 83456180 83456180 G T FSD2 5'UTR 0.31 TCGA-CA-6718-01 15 83926276 83926276 G A BNC1 Missense_Mutation p.S968L 0.32 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 15 83933379 83933379 G A BNC1 Silent p.I208I 0.25 TCGA-CA-6718-01 15 84488752 84488752 C T ADAMTSL3 Missense_Mutation p.R185C 0.28 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 15 84639305 84639305 C T ADAMTSL3 Missense_Mutation p.R854W 0.33 deleterious(0.02) possibly_damaging(0.846) TCGA-CA-6718-01 15 84659890 84659890 C - ADAMTSL3 Frame_Shift_Del p.H1300Ifs*18 0.24 TCGA-CA-6718-01 15 84705721 84705721 C A ADAMTSL3 Missense_Mutation p.L1651I 0.25 tolerated(0.45) benign(0.041) TCGA-CA-6718-01 15 85121401 85121401 T C LINC00933 RNA 0.42 TCGA-CA-6718-01 15 85345211 85345211 T C ZNF592 Missense_Mutation p.F1131L 0.22 tolerated(0.06) probably_damaging(0.994) TCGA-CA-6718-01 15 86201776 86201776 G A AKAP13 Intron 0.33 TCGA-CA-6718-01 15 88679830 88679830 C A NTRK3 Missense_Mutation p.E211D 0.32 tolerated(0.51) benign(0.003) TCGA-CA-6718-01 15 88680651 88680651 C A NTRK3 Missense_Mutation p.M202I 0.19 tolerated(0.07) benign(0.358) TCGA-CA-6718-01 15 89400071 89400071 C A ACAN Missense_Mutation p.L1419I 0.32 tolerated(0.45) possibly_damaging(0.694) TCGA-CA-6718-01 15 89450582 89450582 C A MFGE8 Missense_Mutation p.E77D 0.38 deleterious(0.03) probably_damaging(0.947) TCGA-CA-6718-01 15 90192206 90192206 G A KIF7 Missense_Mutation p.R308W 0.33 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 15 90265332 90265332 T G WDR93 Missense_Mutation p.V281G 0.20 deleterious(0) probably_damaging(0.947) TCGA-CA-6718-01 15 90328705 90328705 C T ANPEP Missense_Mutation p.E927K 0.42 tolerated(0.35) benign(0.062) TCGA-CA-6718-01 15 90349269 90349269 G A ANPEP Silent p.F182F 0.20 TCGA-CA-6718-01 15 91354574 91354574 G T BLM Missense_Mutation p.K1338N 0.26 tolerated(0.08) benign(0.01) TCGA-CA-6718-01 15 92397231 92397231 G T SLCO3A1 Missense_Mutation p.K31N 0.16 tolerated(0.3) benign(0.081) TCGA-CA-6718-01 15 93043620 93043620 G T C15orf32 Missense_Mutation p.C176F 0.37 tolerated_low_confidence(0.93) benign(0) TCGA-CA-6718-01 15 96880769 96880769 G A NR2F2 Missense_Mutation p.G388D 0.28 deleterious(0.02) probably_damaging(0.982) TCGA-CA-6718-01 15 99673115 99673115 G A SYNM Missense_Mutation p.R1516K 0.39 tolerated(0.43) benign(0.024) TCGA-CA-6718-01 16 11864650 11864650 T G ZC3H7A Missense_Mutation p.E366A 0.33 tolerated(0.34) benign(0.213) TCGA-CA-6718-01 16 11873072 11873072 C A ZC3H7A Nonsense_Mutation p.E86* 0.22 TCGA-CA-6718-01 16 1396459 1396459 G A BAIAP3 Missense_Mutation p.R872H 0.28 deleterious(0) probably_damaging(0.988) TCGA-CA-6718-01 16 14041603 14041603 T C ERCC4 Missense_Mutation p.I717T 0.23 deleterious(0) probably_damaging(0.956) TCGA-CA-6718-01 16 1536573 1536573 G A PTX4 Silent p.G263G 0.19 TCGA-CA-6718-01 16 15761258 15761258 G A NDE1 Missense_Mutation p.E67K 0.30 tolerated(0.27) benign(0.115) TCGA-CA-6718-01 16 16276327 16276327 G A ABCC6 Missense_Mutation p.A730V 0.26 deleterious(0) probably_damaging(0.981) TCGA-CA-6718-01 16 18826503 18826503 C T SMG1 Missense_Mutation p.A3539T 0.26 tolerated(0.15) probably_damaging(0.99) TCGA-CA-6718-01 16 18846314 18846314 C A SMG1 Nonsense_Mutation p.E2744* 0.23 TCGA-CA-6718-01 16 18856972 18856972 C A SMG1 Nonsense_Mutation p.E2000* 0.33 TCGA-CA-6718-01 16 19020665 19020665 G T TMC7 Missense_Mutation p.R80I 0.13 tolerated(0.18) benign(0.017) TCGA-CA-6718-01 16 19129983 19129983 A T ITPRIPL2 3'UTR 0.29 TCGA-CA-6718-01 16 19468111 19468111 A C TMC5 Intron 0.32 TCGA-CA-6718-01 16 19547286 19547286 G T CCP110 Missense_Mutation p.D99Y 0.24 deleterious(0) possibly_damaging(0.827) TCGA-CA-6718-01 16 19548462 19548462 G A CCP110 Missense_Mutation p.A491T 0.28 tolerated(0.52) benign(0.079) TCGA-CA-6718-01 16 20370660 20370660 T G PDILT Missense_Mutation p.K579T 0.22 tolerated_low_confidence(0.29) unknown(0) TCGA-CA-6718-01 16 20451826 20451826 G A ACSM5 3'UTR 0.20 TCGA-CA-6718-01 16 20673143 20673143 C T ACSM1 Missense_Mutation p.R322Q 0.23 deleterious(0.04) benign(0.426) TCGA-CA-6718-01 16 20681294 20681294 C T ACSM1 Missense_Mutation p.S256N 0.20 tolerated(0.22) benign(0.004) TCGA-CA-6718-01 16 20986719 20986719 C A DNAH3 Nonsense_Mutation p.E2699* 0.29 TCGA-CA-6718-01 16 20999312 20999312 G A DNAH3 Missense_Mutation p.S2226L 0.27 deleterious(0.04) possibly_damaging(0.612) TCGA-CA-6718-01 16 21109982 21109982 A C DNAH3 Silent p.L825L 0.18 TCGA-CA-6718-01 16 21110031 21110031 T G DNAH3 Missense_Mutation p.K809T 0.25 tolerated(0.37) benign(0.024) TCGA-CA-6718-01 16 21151965 21151965 C T DNAH3 Silent p.T196T 0.08 TCGA-CA-6718-01 16 22588037 22588037 G A RP11-368J21.3 RNA 0.17 TCGA-CA-6718-01 16 23640966 23640966 C T PALB2 Missense_Mutation p.E837K 0.20 tolerated(0.09) benign(0.156) TCGA-CA-6718-01 16 24372779 24372779 C T CACNG3 Silent p.F181F 0.38 TCGA-CA-6718-01 16 24580786 24580786 A C RBBP6 Silent p.P925P 0.32 TCGA-CA-6718-01 16 2503284 2503284 C T CCNF Missense_Mutation p.R521C 0.20 tolerated(0.07) benign(0.052) TCGA-CA-6718-01 16 27079456 27079456 C A C16orf82 RNA 0.35 TCGA-CA-6718-01 16 27236548 27236548 T G NSMCE1 Missense_Mutation p.D244A 0.30 tolerated(0.41) benign(0.024) TCGA-CA-6718-01 16 28948653 28948653 C A CD19 Missense_Mutation p.F420L 0.29 tolerated(0.09) benign(0.002) TCGA-CA-6718-01 16 30492796 30492796 G T ITGAL Nonsense_Mutation p.E205* 0.31 TCGA-CA-6718-01 16 30583416 30583416 G T ZNF688 5'UTR 0.32 TCGA-CA-6718-01 16 30740388 30740388 T C SRCAP Silent p.T1920T 0.09 TCGA-CA-6718-01 16 31050927 31050927 G A STX4 Silent p.Q256Q 0.36 TCGA-CA-6718-01 16 31342570 31342570 G A ITGAM Missense_Mutation p.A1122T 0.29 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 16 3141569 3141569 C A ZSCAN10 Missense_Mutation p.E198D 0.25 tolerated(0.45) benign(0.002) TCGA-CA-6718-01 16 3255152 3255152 A C OR1F1 Missense_Mutation p.K302N 0.25 tolerated(0.08) benign(0.045) TCGA-CA-6718-01 16 3349476 3349476 A T TIGD7 Missense_Mutation p.I380N 0.29 deleterious(0) possibly_damaging(0.635) TCGA-CA-6718-01 16 3433642 3433642 T C ZSCAN32 Missense_Mutation p.N223S 0.18 tolerated(0.22) benign(0.002) TCGA-CA-6718-01 16 3640733 3640733 C A SLX4 Missense_Mutation p.R969I 0.27 deleterious(0.02) possibly_damaging(0.569) TCGA-CA-6718-01 16 3652216 3652216 C A SLX4 Missense_Mutation p.D285Y 0.29 deleterious(0.02) benign(0.39) TCGA-CA-6718-01 16 3808947 3808947 C T CREBBP Missense_Mutation p.A1093T 0.34 unknown(0) TCGA-CA-6718-01 16 4042181 4042181 C A ADCY9 Missense_Mutation p.D725Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 16 48167728 48167728 C A ABCC12 Missense_Mutation p.R333I 0.30 deleterious(0) possibly_damaging(0.707) TCGA-CA-6718-01 16 48265833 48265833 T G ABCC11 5'UTR 0.23 TCGA-CA-6718-01 16 48368243 48368243 C A LONP2 Missense_Mutation p.L638I 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 16 48381505 48381505 C T LONP2 Nonsense_Mutation p.R676* 0.28 TCGA-CA-6718-01 16 50667762 50667762 C A NKD1 3'UTR 0.15 TCGA-CA-6718-01 16 53279656 53279656 G T CHD9 Missense_Mutation p.K1116N 0.18 probably_damaging(0.986) TCGA-CA-6718-01 16 53283942 53283942 T G CHD9 Missense_Mutation p.I1275M 0.19 probably_damaging(1) TCGA-CA-6718-01 16 53493520 53493520 A C RBL2 Missense_Mutation p.Q446P 0.23 deleterious(0.04) benign(0.317) TCGA-CA-6718-01 16 53501054 53501054 C T RBL2 Missense_Mutation p.R650C 0.19 deleterious(0.03) benign(0.049) TCGA-CA-6718-01 16 57283683 57283683 C A ARL2BP Missense_Mutation p.S71Y 0.28 tolerated(0.11) benign(0.178) TCGA-CA-6718-01 16 58552065 58552065 A G SETD6 Silent p.E301E 0.22 TCGA-CA-6718-01 16 58608641 58608641 C A CNOT1 Missense_Mutation p.M617I 0.20 tolerated(0.74) benign(0) TCGA-CA-6718-01 16 58619297 58619297 T G CNOT1 Missense_Mutation p.M251L 0.32 tolerated(0.62) benign(0.002) TCGA-CA-6718-01 16 66420786 66420786 C T CDH5 Silent p.V95V 0.09 TCGA-CA-6718-01 16 66945170 66945170 G T CDH16 Missense_Mutation p.F613L 0.65 tolerated(0.62) benign(0.002) TCGA-CA-6718-01 16 67401310 67401310 C T LRRC36 Missense_Mutation p.S382F 0.22 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-CA-6718-01 16 67970653 67970653 C A PSMB10 5'UTR 0.21 TCGA-CA-6718-01 16 68024017 68024017 G A DPEP2 Silent p.V309V 0.52 TCGA-CA-6718-01 16 68266507 68266507 C T ESRP2 Missense_Mutation p.R265H 0.30 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 16 68373227 68373227 A C PRMT7 Missense_Mutation p.E169D 0.18 tolerated(0.18) benign(0.002) TCGA-CA-6718-01 16 69171768 69171768 G T CIRH1A Missense_Mutation p.R139I 0.23 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 16 69333523 69333523 T G SNTB2 Missense_Mutation p.L459R 0.35 deleterious(0) probably_damaging(0.915) TCGA-CA-6718-01 16 70986416 70986416 G A HYDIN Missense_Mutation p.R2147C 0.15 probably_damaging(0.988) TCGA-CA-6718-01 16 71065546 71065546 G T HYDIN Intron 0.26 TCGA-CA-6718-01 16 71411591 71411591 G A CALB2 Missense_Mutation p.E95K 0.27 deleterious(0.02) benign(0.232) TCGA-CA-6718-01 16 71602173 71602173 C T TAT Silent p.P413P 0.25 TCGA-CA-6718-01 16 71610209 71610209 C A TAT Missense_Mutation p.R37I 0.30 deleterious(0.01) possibly_damaging(0.515) TCGA-CA-6718-01 16 71610262 71610262 G A TAT Silent p.D19D 0.22 TCGA-CA-6718-01 16 71888539 71888539 T G ATXN1L 3'UTR 0.17 TCGA-CA-6718-01 16 72153111 72153111 A G PMFBP1 3'UTR 0.37 TCGA-CA-6718-01 16 75271113 75271113 G A BCAR1 Missense_Mutation p.R301W 0.22 deleterious(0) probably_damaging(0.988) TCGA-CA-6718-01 16 75690503 75690503 G T TERF2IP Missense_Mutation p.K398N 0.30 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-CA-6718-01 16 76350369 76350369 G A CNTNAP4 Missense_Mutation p.E24K 0.32 tolerated(0.08) probably_damaging(0.93) TCGA-CA-6718-01 16 76528953 76528953 C T CNTNAP4 Missense_Mutation p.R670W 0.23 deleterious(0.03) benign(0.021) TCGA-CA-6718-01 16 7657328 7657328 G A RBFOX1 Missense_Mutation p.E242K 0.25 deleterious(0) benign(0.135) TCGA-CA-6718-01 16 77228553 77228553 G A MON1B Missense_Mutation p.R266Q 0.26 tolerated(1) benign(0.004) TCGA-CA-6718-01 16 77328943 77328943 C A ADAMTS18 Missense_Mutation p.K961N 0.45 deleterious(0) probably_damaging(0.975) TCGA-CA-6718-01 16 77334298 77334298 G A ADAMTS18 Silent p.L846L 0.30 TCGA-CA-6718-01 16 77353904 77353904 G A ADAMTS18 Nonsense_Mutation p.R792* 0.21 TCGA-CA-6718-01 16 77910270 77910270 C A VAT1L Silent p.I242I 0.29 TCGA-CA-6718-01 16 78064789 78064789 C A CLEC3A 3'UTR 0.25 TCGA-CA-6718-01 16 78198181 78198181 G T WWOX Nonsense_Mutation p.E171* 0.23 TCGA-CA-6718-01 16 81388275 81388275 C A GAN Missense_Mutation p.S183Y 0.32 deleterious(0) probably_damaging(0.946) TCGA-CA-6718-01 16 84230550 84230550 G A ADAD2 Silent p.S656S 0.15 TCGA-CA-6718-01 16 84801926 84801926 G T USP10 Nonsense_Mutation p.E654* 0.38 TCGA-CA-6718-01 16 85839303 85839303 T G COX4I1 Intron 0.17 TCGA-CA-6718-01 16 88494622 88494622 C T ZNF469 Silent p.F248F 0.77 TCGA-CA-6718-01 16 89293682 89293682 G T ZNF778 Missense_Mutation p.R301I 0.27 deleterious(0) benign(0.329) TCGA-CA-6718-01 16 89348494 89348494 G A ANKRD11 Missense_Mutation p.R1486W 0.32 possibly_damaging(0.689) TCGA-CA-6718-01 16 9004622 9004622 C T USP7 Missense_Mutation p.A381T 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 16 9857230 9857230 A C GRIN2A Missense_Mutation p.L1391V 0.40 tolerated(0.31) possibly_damaging(0.622) TCGA-CA-6718-01 16 9858455 9858455 T C GRIN2A Silent p.G982G 0.32 TCGA-CA-6718-01 16 9858517 9858517 C T GRIN2A Missense_Mutation p.E962K 0.36 deleterious(0.02) possibly_damaging(0.642) TCGA-CA-6718-01 17 10214540 10214540 C A MYH13 Missense_Mutation p.E1512D 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-CA-6718-01 17 10400614 10400614 C A MYH1 Missense_Mutation p.K1507N 0.08 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 17 10408381 10408381 C T MYH1 Missense_Mutation p.E813K 0.25 deleterious(0.01) benign(0.255) TCGA-CA-6718-01 17 10428788 10428788 C T MYH2 Missense_Mutation p.R1506Q 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-CA-6718-01 17 10430349 10430349 T G MYH2 Missense_Mutation p.E1299A 0.20 deleterious(0.02) possibly_damaging(0.79) TCGA-CA-6718-01 17 10447437 10447437 C A MYH2 Missense_Mutation p.E171D 0.27 deleterious(0.05) benign(0.05) TCGA-CA-6718-01 17 11515148 11515148 G A DNAH9 Intron 0.27 TCGA-CA-6718-01 17 11593390 11593390 G T DNAH9 Missense_Mutation p.E1417D 0.19 possibly_damaging(0.596) TCGA-CA-6718-01 17 11671807 11671807 T C DNAH9 Missense_Mutation p.L2403P 0.27 benign(0.212) TCGA-CA-6718-01 17 11837305 11837305 C T DNAH9 Nonsense_Mutation p.R4136* 0.40 TCGA-CA-6718-01 17 11998919 11998919 G T MAP2K4 Nonsense_Mutation p.E141* 0.35 TCGA-CA-6718-01 17 12011200 12011200 G T MAP2K4 Nonsense_Mutation p.E203* 0.23 TCGA-CA-6718-01 17 12655761 12655761 C T MYOCD Missense_Mutation p.R386W 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 17 12655902 12655902 T G MYOCD Missense_Mutation p.Y433D 0.23 tolerated(0.07) probably_damaging(1) TCGA-CA-6718-01 17 12859195 12859195 A C ARHGAP44 Missense_Mutation p.K383T 0.24 deleterious(0.02) possibly_damaging(0.771) TCGA-CA-6718-01 17 15207180 15207180 C T TEKT3 3'UTR 0.55 TCGA-CA-6718-01 17 15231385 15231385 C T TEKT3 Missense_Mutation p.R196Q 0.33 tolerated(0.48) benign(0.004) TCGA-CA-6718-01 17 1577960 1577960 C T PRPF8 Silent p.T1025T 0.42 TCGA-CA-6718-01 17 16525932 16525932 G T ZNF624 Silent p.V756V 0.28 TCGA-CA-6718-01 17 16608587 16608587 G T CCDC144A Nonsense_Mutation p.E180* 0.30 TCGA-CA-6718-01 17 16667510 16667510 C T CCDC144A Intron 0.28 TCGA-CA-6718-01 17 16677061 16677061 A C CCDC144A 3'UTR 0.41 TCGA-CA-6718-01 17 16723335 16723335 C T AC022596.6 RNA 0.61 TCGA-CA-6718-01 17 16875392 16875392 C T TNFRSF13B 5'UTR 0.23 TCGA-CA-6718-01 17 17080620 17080620 G A MPRIP Silent p.A951A 0.33 TCGA-CA-6718-01 17 18098293 18098293 T G ALKBH5 Silent p.T265T 0.14 TCGA-CA-6718-01 17 18219061 18219061 C A SMCR8 5'UTR 0.47 TCGA-CA-6718-01 17 18429978 18429978 A C FAM106A Missense_Mutation p.I47S 0.36 deleterious_low_confidence(0) benign(0.402) TCGA-CA-6718-01 17 260285 260285 A C C17orf97 Missense_Mutation p.N51T 0.37 tolerated_low_confidence(0.09) possibly_damaging(0.719) TCGA-CA-6718-01 17 26731671 26731671 G T SLC46A1 Silent p.V348V 0.12 TCGA-CA-6718-01 17 26925637 26925637 C A SPAG5 Missense_Mutation p.R23I 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6718-01 17 27002089 27002089 C A SUPT6H Silent p.I149I 0.24 TCGA-CA-6718-01 17 27963146 27963146 G T SSH2 Nonsense_Mutation p.S674* 0.30 TCGA-CA-6718-01 17 28417600 28417600 A C EFCAB5 Missense_Mutation p.K1282T 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 17 28651993 28651993 G T TMIGD1 Missense_Mutation p.L161I 0.30 tolerated(1) benign(0.001) TCGA-CA-6718-01 17 29096059 29096059 A C SUZ12P RNA 0.23 TCGA-CA-6718-01 17 29221688 29221688 C T ATAD5 Nonsense_Mutation p.R1802* 0.13 TCGA-CA-6718-01 17 30325752 30325752 G T SUZ12 Missense_Mutation p.K650N 0.28 deleterious(0.04) benign(0.015) TCGA-CA-6718-01 17 31348290 31348290 A C ASIC2 Missense_Mutation p.L463R 0.40 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 17 32685154 32685154 C A CCL13 3'UTR 0.25 TCGA-CA-6718-01 17 32687649 32687649 C T CCL1 Missense_Mutation p.A74T 0.20 deleterious(0.02) probably_damaging(0.971) TCGA-CA-6718-01 17 3324419 3324419 C A OR3A3 Missense_Mutation p.F186L 0.30 deleterious(0) probably_damaging(0.914) TCGA-CA-6718-01 17 33255991 33255991 G T CCT6B Missense_Mutation p.L505I 0.33 tolerated(0.38) benign(0.256) TCGA-CA-6718-01 17 33269617 33269617 C A CCT6B Missense_Mutation p.E257D 0.36 tolerated(0.14) benign(0.095) TCGA-CA-6718-01 17 33448831 33448831 C A FNDC8 Missense_Mutation p.S40Y 0.16 deleterious_low_confidence(0.05) benign(0.308) TCGA-CA-6718-01 17 33482349 33482349 G A UNC45B Missense_Mutation p.R225Q 0.34 tolerated(0.29) benign(0.004) TCGA-CA-6718-01 17 33586002 33586002 T G SLFN5 Missense_Mutation p.F98C 0.26 deleterious(0.04) benign(0.048) TCGA-CA-6718-01 17 33591903 33591903 C T SLFN5 Missense_Mutation p.P614S 0.10 tolerated(0.12) benign(0.084) TCGA-CA-6718-01 17 33690154 33690154 C A SLFN11 Nonsense_Mutation p.E225* 0.30 TCGA-CA-6718-01 17 33690456 33690456 C T SLFN11 Missense_Mutation p.R124H 0.25 tolerated(0.07) benign(0.032) TCGA-CA-6718-01 17 33802014 33802014 T G SLFN12L Missense_Mutation p.Q565H 0.29 deleterious_low_confidence(0.04) benign(0.064) TCGA-CA-6718-01 17 33880141 33880141 C A SLFN14 Silent p.G504G 0.19 TCGA-CA-6718-01 17 34524121 34524121 G T CCL3L3 5'UTR 0.11 TCGA-CA-6718-01 17 3629577 3629577 A C GSG2 Missense_Mutation p.N783T 0.20 tolerated(0.3) benign(0.018) TCGA-CA-6718-01 17 37188281 37188281 G T CTD-2206N4.2 5'Flank 0.15 TCGA-CA-6718-01 17 37563981 37563981 T G MED1 Missense_Mutation p.K1498T 0.32 deleterious_low_confidence(0.04) unknown(0) TCGA-CA-6718-01 17 37618295 37618295 T G CDK12 5'UTR 0.31 TCGA-CA-6718-01 17 37985726 37985726 A C IKZF3 Missense_Mutation p.L26W 0.27 deleterious(0.01) possibly_damaging(0.541) TCGA-CA-6718-01 17 38430069 38430069 G A WIPF2 Missense_Mutation p.R333Q 0.26 deleterious(0.03) probably_damaging(0.992) TCGA-CA-6718-01 17 38546235 38546235 C T TOP2A Silent p.S1483S 0.41 TCGA-CA-6718-01 17 38546301 38546301 C A TOP2A Missense_Mutation p.K1461N 0.33 deleterious_low_confidence(0.01) benign(0.422) TCGA-CA-6718-01 17 38573094 38573094 C A TOP2A Missense_Mutation p.K25N 0.30 tolerated(0.2) benign(0.005) TCGA-CA-6718-01 17 38573118 38573118 T G TOP2A Missense_Mutation p.K17N 0.31 deleterious(0.01) benign(0.434) TCGA-CA-6718-01 17 38955220 38955220 A G KRT28 Missense_Mutation p.V161A 0.25 tolerated(0.1) benign(0.02) TCGA-CA-6718-01 17 39279766 39279766 G T KRTAP4-12 3'UTR 0.19 TCGA-CA-6718-01 17 39406257 39406257 C A KRTAP9-4 Silent p.S95S 0.26 TCGA-CA-6718-01 17 39550371 39550371 C T KRT31 Missense_Mutation p.G383E 0.24 tolerated(0.63) benign(0.009) TCGA-CA-6718-01 17 3969814 3969814 G T ZZEF1 Silent p.S1392S 0.31 TCGA-CA-6718-01 17 40001613 40001613 C A KLHL10 Missense_Mutation p.A307D 0.26 tolerated(0.21) benign(0.003) TCGA-CA-6718-01 17 40113477 40113477 C T TTC25 RNA 0.17 TCGA-CA-6718-01 17 40997978 40997978 C A AOC2 Missense_Mutation p.F445L 0.25 deleterious(0.01) possibly_damaging(0.507) TCGA-CA-6718-01 17 41165553 41165553 C T IFI35 Silent p.L148L 0.09 TCGA-CA-6718-01 17 41343477 41343477 G T NBR1 Nonsense_Mutation p.E318* 0.27 TCGA-CA-6718-01 17 41955244 41955244 G A MPP2 Silent p.R530R 0.30 TCGA-CA-6718-01 17 41958118 41958118 C T MPP2 Missense_Mutation p.R364H 0.42 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 17 42165804 42165804 T C HDAC5 Missense_Mutation p.H518R 0.31 tolerated(0.07) benign(0.014) TCGA-CA-6718-01 17 42232679 42232679 G A C17orf53 Missense_Mutation p.R558Q 0.26 deleterious(0.02) probably_damaging(0.946) TCGA-CA-6718-01 17 42742611 42742611 C A C17orf104 Intron 0.50 TCGA-CA-6718-01 17 42744655 42744655 A G C17orf104 Missense_Mutation p.N459S 0.42 tolerated(0.77) benign(0.003) TCGA-CA-6718-01 17 43005518 43005518 G A KIF18B Nonsense_Mutation p.R718* 0.27 TCGA-CA-6718-01 17 43311481 43311481 G T FMNL1 Missense_Mutation p.E176D 0.33 tolerated(1) unknown(0) TCGA-CA-6718-01 17 43322712 43322712 G C FMNL1 Missense_Mutation p.V941L 0.29 tolerated(0.15) probably_damaging(0.954) TCGA-CA-6718-01 17 44127980 44127980 C T KANSL1 Missense_Mutation p.E647K 0.28 deleterious(0.02) benign(0.284) TCGA-CA-6718-01 17 44590342 44590342 G A LRRC37A2 Silent p.G88G 0.09 TCGA-CA-6718-01 17 4497121 4497121 G T SMTNL2 Missense_Mutation p.K245N 0.36 tolerated(0.4) benign(0.006) TCGA-CA-6718-01 17 45221292 45221292 C T CDC27 Missense_Mutation p.R382Q 0.29 deleterious(0.01) probably_damaging(1) TCGA-CA-6718-01 17 4642167 4642167 C A CXCL16 Missense_Mutation p.R62I 0.22 tolerated(0.52) benign(0) TCGA-CA-6718-01 17 46867435 46867435 G A TTLL6 Missense_Mutation p.R420W 0.17 tolerated(0.12) benign(0.005) TCGA-CA-6718-01 17 47109275 47109275 A G IGF2BP1 Missense_Mutation p.N114S 0.29 tolerated(0.17) benign(0.395) TCGA-CA-6718-01 17 47117434 47117434 G T IGF2BP1 Nonsense_Mutation p.E267* 0.36 TCGA-CA-6718-01 17 47299500 47299500 G T ABI3 Missense_Mutation p.D284Y 0.23 deleterious(0.01) possibly_damaging(0.861) TCGA-CA-6718-01 17 47304051 47304051 C A PHOSPHO1 5'UTR 0.18 TCGA-CA-6718-01 17 47656399 47656399 G A NXPH3 Missense_Mutation p.E166K 0.11 deleterious(0.02) probably_damaging(0.936) TCGA-CA-6718-01 17 4876485 4876485 G T CAMTA2 Missense_Mutation p.F778L 0.11 tolerated(0.05) probably_damaging(0.983) TCGA-CA-6718-01 17 48918366 48918366 C A WFIKKN2 Missense_Mutation p.L573I 0.29 tolerated_low_confidence(0.51) benign(0.028) TCGA-CA-6718-01 17 4996361 4996361 T G ZFP3 3'UTR 0.25 TCGA-CA-6718-01 17 5074046 5074046 G A USP6 Missense_Mutation p.V1264I 0.27 tolerated_low_confidence(0.11) benign(0.036) TCGA-CA-6718-01 17 5086449 5086449 C A ZNF594 Missense_Mutation p.R368I 0.28 tolerated(0.07) benign(0.026) TCGA-CA-6718-01 17 51901220 51901220 A G KIF2B Missense_Mutation p.N276D 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 17 5253860 5253860 G A RABEP1 Missense_Mutation p.R300Q 0.14 deleterious(0.04) possibly_damaging(0.732) TCGA-CA-6718-01 17 53121173 53121173 C A STXBP4 Intron 0.23 TCGA-CA-6718-01 17 5319982 5319982 T C NUP88 Silent p.P106P 0.28 TCGA-CA-6718-01 17 5388501 5388501 G T DERL2 Missense_Mutation p.F43L 0.21 tolerated(0.22) benign(0.013) TCGA-CA-6718-01 17 54534320 54534320 C T ANKFN1 Missense_Mutation p.R439W 0.34 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 17 54559953 54559953 C A ANKFN1 3'UTR 0.24 TCGA-CA-6718-01 17 54672751 54672751 T G NOG 3'UTR 0.18 TCGA-CA-6718-01 17 56423492 56423492 C T SUPT4H1 3'UTR 0.18 TCGA-CA-6718-01 17 56585907 56585907 C T MTMR4 Missense_Mutation p.R158Q 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6718-01 17 56774116 56774116 T C RAD51C Missense_Mutation p.V156A 0.25 deleterious(0) possibly_damaging(0.794) TCGA-CA-6718-01 17 57157216 57157216 C A TRIM37 Missense_Mutation p.R172I 0.34 deleterious(0.01) possibly_damaging(0.84) TCGA-CA-6718-01 17 57775125 57775125 C T PTRH2 Missense_Mutation p.R72Q 0.35 deleterious(0.01) probably_damaging(1) TCGA-CA-6718-01 17 58033867 58033867 T C RNFT1 Silent p.R351R 0.29 TCGA-CA-6718-01 17 58150580 58150580 A G HEATR6 Missense_Mutation p.S177P 0.35 tolerated(1) benign(0.003) TCGA-CA-6718-01 17 58233928 58233928 C A CA4 Silent p.V40V 0.24 TCGA-CA-6718-01 17 58346903 58346903 A C USP32 Missense_Mutation p.F240C 0.38 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 17 58366039 58366039 T C USP32 Missense_Mutation p.E139G 0.33 deleterious(0.01) possibly_damaging(0.787) TCGA-CA-6718-01 17 59543285 59543285 C A TBX4 Missense_Mutation p.F129L 0.41 deleterious(0.02) benign(0.115) TCGA-CA-6718-01 17 60631105 60631105 G T TLK2 Missense_Mutation p.D237Y 0.23 deleterious(0) probably_damaging(0.959) TCGA-CA-6718-01 17 60749113 60749113 G T MRC2 Missense_Mutation p.K407N 0.30 tolerated(0.22) benign(0.021) TCGA-CA-6718-01 17 60813505 60813505 G T MARCH10 Missense_Mutation p.S575Y 0.23 deleterious(0) probably_damaging(0.935) TCGA-CA-6718-01 17 61568611 61568611 C A ACE Missense_Mutation p.F927L 0.41 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6718-01 17 61882529 61882529 T G DDX42 Missense_Mutation p.N240K 0.25 tolerated(0.18) benign(0.033) TCGA-CA-6718-01 17 61902521 61902521 A C FTSJ3 Missense_Mutation p.F200V 0.26 deleterious(0) possibly_damaging(0.61) TCGA-CA-6718-01 17 61910464 61910464 C T SMARCD2 Missense_Mutation p.A503T 0.24 tolerated(0.58) benign(0.078) TCGA-CA-6718-01 17 62018293 62018293 C A SCN4A Missense_Mutation p.E1783D 0.28 tolerated(0.37) benign(0.001) TCGA-CA-6718-01 17 62034691 62034691 T C SCN4A Missense_Mutation p.D736G 0.35 deleterious(0.01) possibly_damaging(0.861) TCGA-CA-6718-01 17 62254704 62254704 A C TEX2 Missense_Mutation p.M858R 0.15 tolerated(0.45) benign(0.108) TCGA-CA-6718-01 17 62481967 62481967 T G POLG2 Missense_Mutation p.N330H 0.37 tolerated(0.14) benign(0.286) TCGA-CA-6718-01 17 62589631 62589631 C T SMURF2 Silent p.K87K 0.28 TCGA-CA-6718-01 17 62964317 62964317 C A AMZ2P1 RNA 0.35 TCGA-CA-6718-01 17 64873458 64873458 C T CACNG5 Missense_Mutation p.A3V 0.29 tolerated(0.54) benign(0.017) TCGA-CA-6718-01 17 6556369 6556369 T G C17orf100 3'UTR 0.18 TCGA-CA-6718-01 17 65735085 65735085 C A NOL11 Missense_Mutation p.L601I 0.31 deleterious(0.01) possibly_damaging(0.504) TCGA-CA-6718-01 17 65907159 65907159 G T BPTF Missense_Mutation p.K1053N 0.26 probably_damaging(0.982) TCGA-CA-6718-01 17 67028259 67028259 C A ABCA9 Nonsense_Mutation p.E479* 0.44 TCGA-CA-6718-01 17 67145016 67145016 T G ABCA10 Missense_Mutation p.K1528N 0.22 deleterious(0.05) benign(0.002) TCGA-CA-6718-01 17 67189746 67189746 C A ABCA10 Missense_Mutation p.R510I 0.25 deleterious(0) probably_damaging(0.913) TCGA-CA-6718-01 17 67411108 67411108 A G MAP2K6 5'UTR 0.24 TCGA-CA-6718-01 17 67501930 67501930 G A MAP2K6 Missense_Mutation p.R9Q 0.24 deleterious(0.01) benign(0.087) TCGA-CA-6718-01 17 68129672 68129672 C A KCNJ16 3'UTR 0.22 TCGA-CA-6718-01 17 68130128 68130128 C A KCNJ16 3'UTR 0.27 TCGA-CA-6718-01 17 68173520 68173520 T G KCNJ2 3'UTR 0.28 TCGA-CA-6718-01 17 68174941 68174941 T G KCNJ2 3'UTR 0.29 TCGA-CA-6718-01 17 71437037 71437037 G A SDK2 Silent p.I213I 0.32 TCGA-CA-6718-01 17 7219510 7219510 C T NEURL4 Missense_Mutation p.E1541K 0.26 deleterious(0.02) benign(0.388) TCGA-CA-6718-01 17 72283120 72283120 T C DNAI2 Missense_Mutation p.M117T 0.28 deleterious(0.01) benign(0.041) TCGA-CA-6718-01 17 72349406 72349406 C T KIF19 Missense_Mutation p.P729L 0.32 deleterious(0.03) benign(0.071) TCGA-CA-6718-01 17 72588588 72588588 G T C17orf77 Nonsense_Mutation p.E135* 0.37 TCGA-CA-6718-01 17 72589104 72589104 C A C17orf77 3'UTR 0.26 TCGA-CA-6718-01 17 72590321 72590321 A C C17orf77 3'UTR 0.28 TCGA-CA-6718-01 17 72692339 72692339 C A CD300LF Nonsense_Mutation p.E193* 0.26 TCGA-CA-6718-01 17 7290737 7290737 C T TNK1 Missense_Mutation p.R485W 0.29 deleterious(0.04) benign(0.003) TCGA-CA-6718-01 17 7348626 7348626 G T CHRNB1 Missense_Mutation p.E32D 0.20 tolerated(0.31) benign(0.012) TCGA-CA-6718-01 17 73969849 73969849 A C ACOX1 Intron 0.30 TCGA-CA-6718-01 17 74039952 74039952 A C SRP68 Missense_Mutation p.N494K 0.35 tolerated(1) benign(0.001) TCGA-CA-6718-01 17 74287527 74287527 G A QRICH2 Missense_Mutation p.A928V 0.08 tolerated(0.31) benign(0.007) TCGA-CA-6718-01 17 74287983 74287983 A G QRICH2 Missense_Mutation p.V776A 0.32 tolerated(0.08) benign(0.034) TCGA-CA-6718-01 17 74289513 74289513 A G QRICH2 Missense_Mutation p.L266S 0.28 tolerated(0.12) benign(0.072) TCGA-CA-6718-01 17 74395759 74395759 C A UBE2O Nonsense_Mutation p.E467* 0.39 TCGA-CA-6718-01 17 74622409 74622409 C A ST6GALNAC1 Missense_Mutation p.M459I 0.33 benign(0.038) TCGA-CA-6718-01 17 74712624 74712624 G A JMJD6 3'UTR 0.55 TCGA-CA-6718-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.29 TCGA-CA-6718-01 17 7579406 7579406 G T TP53 Nonsense_Mutation p.S94* 0.20 TCGA-CA-6718-01 17 76455907 76455907 G A DNAH17 Silent p.F3190F 0.28 TCGA-CA-6718-01 17 76506581 76506581 A C DNAH17 Missense_Mutation p.F1370C 0.46 probably_damaging(0.988) TCGA-CA-6718-01 17 76694428 76694428 T G CYTH1 Missense_Mutation p.K245T 0.24 deleterious(0.01) possibly_damaging(0.898) TCGA-CA-6718-01 17 76887422 76887422 C A DDC8 Silent p.G388G 0.22 TCGA-CA-6718-01 17 7721409 7721409 G A DNAH2 Missense_Mutation p.R3461Q 0.47 benign(0.033) TCGA-CA-6718-01 17 78317681 78317681 C A RNF213 Missense_Mutation p.L2070I 0.25 benign(0.275) TCGA-CA-6718-01 17 7851025 7851025 G T CNTROB Missense_Mutation p.K710N 0.44 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-CA-6718-01 17 7851573 7851573 C A CNTROB Missense_Mutation p.L770I 0.27 tolerated_low_confidence(0.05) benign(0.088) TCGA-CA-6718-01 17 79173338 79173338 C A AZI1 Missense_Mutation p.Q345H 0.33 deleterious(0.01) probably_damaging(0.922) TCGA-CA-6718-01 17 79411431 79411431 C T RP11-1055B8.7 Silent p.F783F 0.39 TCGA-CA-6718-01 17 7948635 7948635 C A ALOX15B Missense_Mutation p.S310Y 0.39 tolerated(1) probably_damaging(0.974) TCGA-CA-6718-01 17 79495590 79495590 G T FSCN2 Missense_Mutation p.K11N 0.36 deleterious(0.02) possibly_damaging(0.77) TCGA-CA-6718-01 17 79899081 79899081 G A MYADML2 Silent p.F179F 0.20 TCGA-CA-6718-01 17 79913410 79913410 G A NOTUM Silent p.F333F 0.30 TCGA-CA-6718-01 17 7999969 7999969 G T ALOXE3 Silent p.L836L 0.22 TCGA-CA-6718-01 17 80601890 80601890 G A WDR45B Missense_Mutation p.A26V 0.11 deleterious(0.04) benign(0.124) TCGA-CA-6718-01 17 8198105 8198105 G A SLC25A35 Silent p.G7G 0.50 TCGA-CA-6718-01 17 8221715 8221715 G A ARHGEF15 Missense_Mutation p.R572H 0.30 tolerated(0.23) benign(0.005) TCGA-CA-6718-01 17 8439162 8439162 G T MYH10 Missense_Mutation p.Q565K 0.19 probably_damaging(0.985) TCGA-CA-6718-01 17 8706609 8706609 G T PIK3R6 Missense_Mutation p.F748L 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 18 10548364 10548364 G A NAPG Silent p.R218R 0.22 TCGA-CA-6718-01 18 10672866 10672866 A C PIEZO2 Missense_Mutation p.N2609K 0.32 tolerated(0.96) benign(0.002) TCGA-CA-6718-01 18 10675260 10675260 A C PIEZO2 Missense_Mutation p.Y2590D 0.21 deleterious(0) possibly_damaging(0.699) TCGA-CA-6718-01 18 12370897 12370897 T G AFG3L2 Missense_Mutation p.K81N 0.26 deleterious(0.01) benign(0.347) TCGA-CA-6718-01 18 12802116 12802116 G T PTPN2 Missense_Mutation p.S298Y 0.28 deleterious(0.04) benign(0.057) TCGA-CA-6718-01 18 12802138 12802138 C A PTPN2 Nonsense_Mutation p.E291* 0.34 TCGA-CA-6718-01 18 12802146 12802146 C T PTPN2 Missense_Mutation p.R288Q 0.34 tolerated(1) benign(0.003) TCGA-CA-6718-01 18 14479030 14479030 A C CXADRP3 RNA 0.36 TCGA-CA-6718-01 18 14523488 14523488 C A POTEC Nonsense_Mutation p.E406* 0.21 TCGA-CA-6718-01 18 14537862 14537862 C A POTEC Nonsense_Mutation p.E250* 0.25 TCGA-CA-6718-01 18 14808693 14808693 C A ANKRD30B Intron 0.33 TCGA-CA-6718-01 18 18619493 18619493 C A ROCK1 Nonsense_Mutation p.E331* 0.20 TCGA-CA-6718-01 18 19997440 19997440 A G CTAGE1 Missense_Mutation p.V112A 0.19 deleterious(0.02) benign(0) TCGA-CA-6718-01 18 21743207 21743207 T C OSBPL1A Missense_Mutation p.Q930R 0.10 tolerated(0.08) possibly_damaging(0.698) TCGA-CA-6718-01 18 22805854 22805854 T G ZNF521 Missense_Mutation p.Q676H 0.29 tolerated(0.11) probably_damaging(0.986) TCGA-CA-6718-01 18 22902131 22902131 C A ZNF521 Missense_Mutation p.D21Y 0.33 tolerated_low_confidence(0.05) benign(0.004) TCGA-CA-6718-01 18 24039711 24039711 A G KCTD1 Missense_Mutation p.L163S 0.39 deleterious(0) probably_damaging(0.974) TCGA-CA-6718-01 18 24126901 24126901 G A KCTD1 Intron 0.53 TCGA-CA-6718-01 18 24440760 24440760 G T AQP4 Silent p.I223I 0.19 TCGA-CA-6718-01 18 24722776 24722776 C A CHST9 5'UTR 0.19 TCGA-CA-6718-01 18 2539100 2539100 A G METTL4 Silent p.L440L 0.22 TCGA-CA-6718-01 18 25543330 25543330 G T CDH2 Missense_Mutation p.F835L 0.31 deleterious(0) possibly_damaging(0.897) TCGA-CA-6718-01 18 25565167 25565167 T G CDH2 Missense_Mutation p.K669T 0.27 tolerated(0.25) benign(0.056) TCGA-CA-6718-01 18 2587866 2587866 T G NDC80 Missense_Mutation p.F236C 0.38 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 18 260208 260208 T G THOC1 Missense_Mutation p.K118T 0.15 tolerated(0.21) possibly_damaging(0.678) TCGA-CA-6718-01 18 2796015 2796015 T G SMCHD1 Missense_Mutation p.L1930V 0.25 tolerated(0.23) benign(0.005) TCGA-CA-6718-01 18 28609570 28609570 C T DSC3 Missense_Mutation p.E127K 0.29 deleterious(0.01) possibly_damaging(0.521) TCGA-CA-6718-01 18 28648063 28648063 C T DSC2 Missense_Mutation p.R875Q 0.22 tolerated(0.59) benign(0.01) TCGA-CA-6718-01 18 28908232 28908232 C A DSG1 Silent p.I99I 0.28 TCGA-CA-6718-01 18 28909991 28909991 C A DSG1 Missense_Mutation p.S170Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 18 28972226 28972226 C A DSG4 Missense_Mutation p.L310I 0.57 tolerated(0.7) benign(0.144) TCGA-CA-6718-01 18 28993453 28993453 G T DSG4 Missense_Mutation p.M1025I 0.30 tolerated(0.06) benign(0.023) TCGA-CA-6718-01 18 29040821 29040821 T C DSG3 Missense_Mutation p.V237A 0.40 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 18 29046573 29046573 G A DSG3 Missense_Mutation p.E498K 0.23 deleterious(0.02) benign(0.032) TCGA-CA-6718-01 18 29339738 29339738 A C SLC25A52 Missense_Mutation p.F306C 0.16 deleterious(0) benign(0.296) TCGA-CA-6718-01 18 30092830 30092830 C T WBP11P1 RNA 0.21 TCGA-CA-6718-01 18 30672796 30672796 C A CCDC178 Nonsense_Mutation p.E773* 0.27 TCGA-CA-6718-01 18 3083882 3083882 A C MYOM1 Silent p.A1463A 0.24 TCGA-CA-6718-01 18 31323460 31323460 T G ASXL3 Missense_Mutation p.I1216M 0.42 benign(0.019) TCGA-CA-6718-01 18 31432850 31432850 G A NOL4 Nonsense_Mutation p.R625* 0.22 TCGA-CA-6718-01 18 31523095 31523095 G T NOL4 Silent p.I492I 0.21 TCGA-CA-6718-01 18 32825807 32825807 C A ZNF397 Missense_Mutation p.Q380K 0.28 deleterious(0.02) possibly_damaging(0.714) TCGA-CA-6718-01 18 34349381 34349381 G A FHOD3 Missense_Mutation p.R1410Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 18 35145383 35145383 G A CELF4 Silent p.F74F 0.11 TCGA-CA-6718-01 18 40850576 40850576 C A SYT4 Missense_Mutation p.K336N 0.30 deleterious(0) probably_damaging(0.981) TCGA-CA-6718-01 18 43329986 43329986 C A SLC14A1 3'UTR 0.25 TCGA-CA-6718-01 18 43585447 43585447 C A PSTPIP2 Missense_Mutation p.K135N 0.26 deleterious(0.03) probably_damaging(1) TCGA-CA-6718-01 18 44272209 44272209 C T ST8SIA5 Silent p.Q78Q 0.26 TCGA-CA-6718-01 18 44400988 44400988 G A PIAS2 Missense_Mutation p.S519L 0.22 deleterious(0.04) benign(0.027) TCGA-CA-6718-01 18 44561131 44561131 G A TCEB3B Missense_Mutation p.R169W 0.31 deleterious(0.01) probably_damaging(0.983) TCGA-CA-6718-01 18 47009992 47009992 C A C18orf32 Nonsense_Mutation p.E43* 0.29 TCGA-CA-6718-01 18 47405368 47405368 A G MYO5B Missense_Mutation p.S1075P 0.29 tolerated(0.17) possibly_damaging(0.714) TCGA-CA-6718-01 18 48327798 48327798 T G MRO Missense_Mutation p.K183T 0.16 tolerated(0.43) benign(0.02) TCGA-CA-6718-01 18 48575071 48575071 G T SMAD4 Nonsense_Mutation p.G89* 0.40 TCGA-CA-6718-01 18 48604779 48604779 A C SMAD4 Missense_Mutation p.Q534P 0.40 deleterious(0) probably_damaging(0.975) TCGA-CA-6718-01 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.45 TCGA-CA-6718-01 18 52921880 52921880 G T TCF4 Missense_Mutation p.L502I 0.32 deleterious(0.02) probably_damaging(1) TCGA-CA-6718-01 18 53302978 53302978 A G TCF4 Missense_Mutation p.W51R 0.33 deleterious_low_confidence(0) unknown(0) TCGA-CA-6718-01 18 55027287 55027287 C A ST8SIA3 Missense_Mutation p.L308I 0.26 benign(0.428) TCGA-CA-6718-01 18 55362763 55362763 C A ATP8B1 Nonsense_Mutation p.E234* 0.27 TCGA-CA-6718-01 18 56202169 56202169 C A ALPK2 Missense_Mutation p.K1750N 0.32 deleterious(0.03) possibly_damaging(0.52) TCGA-CA-6718-01 18 56203797 56203797 G A ALPK2 Silent p.L1208L 0.30 TCGA-CA-6718-01 18 581057 581057 C A CETN1 3'UTR 0.27 TCGA-CA-6718-01 18 5956368 5956368 A C L3MBTL4 Missense_Mutation p.F575V 0.28 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 18 60986237 60986237 C T BCL2 5'UTR 0.35 TCGA-CA-6718-01 18 61259620 61259620 G T SERPINB13 Missense_Mutation p.K88N 0.28 tolerated(0.05) possibly_damaging(0.724) TCGA-CA-6718-01 18 61304856 61304856 G T SERPINB4 3'UTR 0.16 TCGA-CA-6718-01 18 61328036 61328036 G T SERPINB3 Missense_Mutation p.H74N 0.33 tolerated(0.2) benign(0.014) TCGA-CA-6718-01 18 61627545 61627545 T G HMSD Missense_Mutation p.L126V 0.26 tolerated(0.13) benign(0.177) TCGA-CA-6718-01 18 627251 627251 C A CLUL1 Missense_Mutation p.S193Y 0.17 tolerated(0.43) possibly_damaging(0.559) TCGA-CA-6718-01 18 63529929 63529929 G T CDH7 Missense_Mutation p.R547I 0.13 deleterious(0) probably_damaging(0.97) TCGA-CA-6718-01 18 63548108 63548108 G T CDH7 Missense_Mutation p.G779V 0.15 deleterious(0.03) benign(0.1) TCGA-CA-6718-01 18 641332 641332 C T CLUL1 Missense_Mutation p.P334S 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 18 64172255 64172255 C A CDH19 Nonsense_Mutation p.E705* 0.25 TCGA-CA-6718-01 18 65182101 65182101 C A DSEL 5'UTR 0.15 TCGA-CA-6718-01 18 66367679 66367679 T G TMX3 Missense_Mutation p.K119Q 0.24 deleterious(0.01) probably_damaging(0.97) TCGA-CA-6718-01 18 67614626 67614626 A C CD226 Nonsense_Mutation p.L6* 0.28 TCGA-CA-6718-01 18 67844076 67844076 C A RTTN Missense_Mutation p.E437D 0.30 tolerated(0.29) benign(0.006) TCGA-CA-6718-01 18 67996842 67996842 C T SOCS6 3'UTR 0.24 TCGA-CA-6718-01 18 6859850 6859850 C A ARHGAP28 Missense_Mutation p.S68Y 0.32 tolerated(0.15) benign(0.248) TCGA-CA-6718-01 18 6947169 6947169 T C LAMA1 Missense_Mutation p.D2946G 0.12 tolerated(0.08) benign(0.097) TCGA-CA-6718-01 18 6958662 6958662 C A LAMA1 Splice_Site p.X2593_splice 0.34 TCGA-CA-6718-01 18 70205418 70205418 G T CBLN2 Missense_Mutation p.P223H 0.45 deleterious(0) probably_damaging(0.923) TCGA-CA-6718-01 18 70461453 70461453 C T NETO1 Missense_Mutation p.E180K 0.41 deleterious(0) possibly_damaging(0.75) TCGA-CA-6718-01 18 70532155 70532155 C T NETO1 Silent p.Q36Q 0.33 TCGA-CA-6718-01 18 71790605 71790605 C A FBXO15 Missense_Mutation p.R379I 0.26 deleterious(0) benign(0.149) TCGA-CA-6718-01 18 71822600 71822600 T G TIMM21 Missense_Mutation p.Y142D 0.25 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 18 72244255 72244255 C T CNDP1 Silent p.F331F 0.32 TCGA-CA-6718-01 18 72345322 72345322 A G ZNF407 Missense_Mutation p.N783D 0.35 tolerated(0.11) possibly_damaging(0.534) TCGA-CA-6718-01 18 73000642 73000642 C T TSHZ1 3'UTR 0.26 TCGA-CA-6718-01 18 73000779 73000779 C A TSHZ1 3'UTR 0.28 TCGA-CA-6718-01 18 73001202 73001202 C T TSHZ1 3'UTR 0.25 TCGA-CA-6718-01 18 74580769 74580769 C T ZNF236 Silent p.F162F 0.18 TCGA-CA-6718-01 18 756804 756804 T G YES1 Missense_Mutation p.E8D 0.21 tolerated(0.43) probably_damaging(0.984) TCGA-CA-6718-01 18 76754300 76754300 C T SALL3 Missense_Mutation p.P770L 0.23 deleterious(0.05) benign(0.014) TCGA-CA-6718-01 18 77193637 77193637 C T NFATC1 Missense_Mutation p.R416W 0.26 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 18 77193679 77193679 G A NFATC1 Missense_Mutation p.E430K 0.17 deleterious(0) probably_damaging(0.94) TCGA-CA-6718-01 18 8069818 8069818 G T PTPRM Missense_Mutation p.V423F 0.25 tolerated(0.92) benign(0.001) TCGA-CA-6718-01 18 8826092 8826092 G A SOGA2 Silent p.E1528E 0.38 TCGA-CA-6718-01 18 9257371 9257371 T G ANKRD12 Missense_Mutation p.F1369C 0.26 tolerated_low_confidence(0.11) benign(0.002) TCGA-CA-6718-01 19 10112453 10112453 C T COL5A3 Silent p.T318T 0.29 TCGA-CA-6718-01 19 10265314 10265314 T C DNMT1 Missense_Mutation p.T594A 0.20 tolerated(0.06) benign(0.025) TCGA-CA-6718-01 19 1044671 1044671 C T ABCA7 Silent p.S381S 0.33 TCGA-CA-6718-01 19 10781281 10781281 A C ILF3 5'UTR 0.27 TCGA-CA-6718-01 19 1110798 1110798 C T SBNO2 Missense_Mutation p.D992N 0.35 tolerated(0.13) benign(0.378) TCGA-CA-6718-01 19 11565500 11565500 G T ELAVL3 Silent p.V315V 0.38 TCGA-CA-6718-01 19 11728130 11728130 G A ZNF627 Missense_Mutation p.R271Q 0.22 deleterious(0) probably_damaging(0.924) TCGA-CA-6718-01 19 11728466 11728466 G T ZNF627 Missense_Mutation p.R383I 0.29 tolerated(0.13) benign(0.01) TCGA-CA-6718-01 19 11796286 11796286 G A ZNF833P RNA 0.26 TCGA-CA-6718-01 19 11796962 11796962 G T ZNF833P RNA 0.43 TCGA-CA-6718-01 19 11891848 11891848 C T ZNF441 Silent p.F403F 0.12 TCGA-CA-6718-01 19 11917583 11917583 A C ZNF491 Missense_Mutation p.K272T 0.31 deleterious(0) possibly_damaging(0.519) TCGA-CA-6718-01 19 11918276 11918276 C T ZNF491 3'UTR 0.18 TCGA-CA-6718-01 19 11943750 11943750 G A ZNF440 Missense_Mutation p.E587K 0.33 tolerated_low_confidence(1) benign(0.004) TCGA-CA-6718-01 19 11944822 11944822 A C ZNF440 3'UTR 0.35 TCGA-CA-6718-01 19 12221150 12221150 A G ZNF788 Missense_Mutation p.N32D 0.11 tolerated(0.09) probably_damaging(0.992) TCGA-CA-6718-01 19 12243455 12243455 T C ZNF20 Missense_Mutation p.I516V 0.19 tolerated(0.51) benign(0.038) TCGA-CA-6718-01 19 12256583 12256583 C A ZNF625 Missense_Mutation p.E216D 0.21 deleterious(0.05) possibly_damaging(0.796) TCGA-CA-6718-01 19 12258245 12258245 A C ZNF625 Missense_Mutation p.I52M 0.67 deleterious(0.02) benign(0.014) TCGA-CA-6718-01 19 12297388 12297388 T G ZNF136 Missense_Mutation p.S65R 0.67 tolerated(0.06) benign(0.302) TCGA-CA-6718-01 19 12429988 12429988 T G ZNF563 Missense_Mutation p.K284T 0.28 deleterious(0.01) benign(0.158) TCGA-CA-6718-01 19 12430163 12430163 C A ZNF563 Nonsense_Mutation p.E226* 0.40 TCGA-CA-6718-01 19 12430576 12430576 C T ZNF563 Missense_Mutation p.R88Q 0.27 tolerated(0.06) benign(0.003) TCGA-CA-6718-01 19 12461221 12461221 C T ZNF442 Missense_Mutation p.R393Q 0.20 tolerated(0.52) benign(0.314) TCGA-CA-6718-01 19 12492079 12492079 T G CTD-3105H18.14 3'UTR 0.30 TCGA-CA-6718-01 19 12637357 12637357 C A ZNF564 Missense_Mutation p.R522I 0.26 tolerated(0.34) benign(0.014) TCGA-CA-6718-01 19 13010079 13010079 C A SYCE2 3'UTR 0.26 TCGA-CA-6718-01 19 13039248 13039248 T G FARSA Missense_Mutation p.N250T 0.23 deleterious(0.02) possibly_damaging(0.902) TCGA-CA-6718-01 19 13136327 13136327 G T NFIX Nonsense_Mutation p.E174* 0.35 TCGA-CA-6718-01 19 13341004 13341004 G A CACNA1A Missense_Mutation p.A1807V 0.25 possibly_damaging(0.682) TCGA-CA-6718-01 19 13373595 13373595 G A CACNA1A Missense_Mutation p.R1348W 0.31 probably_damaging(0.942) TCGA-CA-6718-01 19 14165241 14165241 C A PALM3 Nonsense_Mutation p.E400* 0.30 TCGA-CA-6718-01 19 14761985 14761985 G A EMR3 Silent p.C203C 0.29 TCGA-CA-6718-01 19 15198236 15198236 C T OR1I1 Silent p.I120I 0.26 TCGA-CA-6718-01 19 16045054 16045054 C T CYP4F11 Silent p.P55P 0.28 TCGA-CA-6718-01 19 16799034 16799034 C T TMEM38A Missense_Mutation p.S251L 0.39 tolerated(0.44) benign(0.012) TCGA-CA-6718-01 19 16799069 16799069 G T TMEM38A Missense_Mutation p.G263C 0.39 tolerated(0.07) possibly_damaging(0.903) TCGA-CA-6718-01 19 17441187 17441187 G T ANO8 Missense_Mutation p.L374I 0.18 tolerated(0.29) benign(0.345) TCGA-CA-6718-01 19 17831773 17831773 C T MAP1S Silent p.G49G 0.28 TCGA-CA-6718-01 19 1790788 1790788 C A ATP8B3 Missense_Mutation p.E782D 0.47 tolerated(1) benign(0.012) TCGA-CA-6718-01 19 18305831 18305831 C T MPV17L2 Nonsense_Mutation p.R167* 0.16 TCGA-CA-6718-01 19 18710558 18710558 C T CRLF1 Missense_Mutation p.E72K 0.26 tolerated(0.15) benign(0.083) TCGA-CA-6718-01 19 19141850 19141850 A C SUGP2 Missense_Mutation p.F11V 0.15 deleterious(0.01) benign(0.26) TCGA-CA-6718-01 19 19371809 19371809 G A HAPLN4 Silent p.F99F 0.19 TCGA-CA-6718-01 19 1978324 1978324 G T CSNK1G2 Nonsense_Mutation p.E70* 0.25 TCGA-CA-6718-01 19 19790436 19790436 G T ZNF101 Missense_Mutation p.R213L 0.25 tolerated(0.19) benign(0.041) TCGA-CA-6718-01 19 20044426 20044426 G T ZNF93 Missense_Mutation p.R221I 0.37 tolerated(0.35) benign(0.083) TCGA-CA-6718-01 19 20045183 20045183 A C ZNF93 Missense_Mutation p.K473N 0.43 tolerated(0.17) benign(0.005) TCGA-CA-6718-01 19 20117565 20117565 C A ZNF682 Missense_Mutation p.R249I 0.74 tolerated(0.4) possibly_damaging(0.764) TCGA-CA-6718-01 19 20215059 20215059 A C ZNF90 Missense_Mutation p.E5D 0.13 deleterious(0) possibly_damaging(0.551) TCGA-CA-6718-01 19 20728594 20728594 T A ZNF737 Missense_Mutation p.T139S 0.32 tolerated(0.06) benign(0.1) TCGA-CA-6718-01 19 20808154 20808154 C A ZNF626 Nonsense_Mutation p.E177* 0.18 TCGA-CA-6718-01 19 21239788 21239788 G T ZNF430 Missense_Mutation p.R225I 0.26 tolerated(0.31) benign(0.002) TCGA-CA-6718-01 19 2130455 2130455 G A AP3D1 Missense_Mutation p.R182C 0.21 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 19 21350394 21350394 G T ZNF431 Missense_Mutation p.D82Y 0.16 deleterious(0.02) possibly_damaging(0.863) TCGA-CA-6718-01 19 21476001 21476001 T G ZNF708 3'UTR 0.21 TCGA-CA-6718-01 19 21476380 21476380 A C ZNF708 Missense_Mutation p.F463C 0.33 deleterious(0) possibly_damaging(0.852) TCGA-CA-6718-01 19 21476868 21476868 T G ZNF708 Missense_Mutation p.K300N 0.17 tolerated(0.17) possibly_damaging(0.532) TCGA-CA-6718-01 19 21512015 21512015 T G ZNF708 5'UTR 0.41 TCGA-CA-6718-01 19 21608633 21608633 T G ZNF493 3'UTR 0.10 TCGA-CA-6718-01 19 21608710 21608710 A C ZNF493 3'UTR 0.47 TCGA-CA-6718-01 19 22156742 22156742 C T ZNF208 Missense_Mutation p.G365E 0.29 deleterious(0.04) probably_damaging(1) TCGA-CA-6718-01 19 22362679 22362679 C A ZNF676 3'UTR 0.44 TCGA-CA-6718-01 19 22362965 22362965 C T ZNF676 Silent p.S518S 0.33 TCGA-CA-6718-01 19 22574423 22574423 C A ZNF98 Missense_Mutation p.M538I 0.24 tolerated(0.62) benign(0) TCGA-CA-6718-01 19 22847625 22847625 G T ZNF492 Missense_Mutation p.R385I 0.12 tolerated(0.5) benign(0.001) TCGA-CA-6718-01 19 22951197 22951197 C T ZNF99 Missense_Mutation p.A46T 0.19 tolerated(0.19) possibly_damaging(0.493) TCGA-CA-6718-01 19 23543974 23543974 T C ZNF91 Missense_Mutation p.K603E 0.33 tolerated(0.4) possibly_damaging(0.79) TCGA-CA-6718-01 19 23545087 23545087 G T ZNF91 Missense_Mutation p.H232N 0.26 deleterious(0.03) benign(0.102) TCGA-CA-6718-01 19 23837385 23837385 T C ZNF675 Missense_Mutation p.K117R 0.29 tolerated(0.11) possibly_damaging(0.899) TCGA-CA-6718-01 19 2430847 2430847 G T LMNB2 3'UTR 0.30 TCGA-CA-6718-01 19 2876221 2876221 T A ZNF556 Missense_Mutation p.N87K 0.31 tolerated(0.48) benign(0.051) TCGA-CA-6718-01 19 2933854 2933854 C T ZNF77 Missense_Mutation p.R424Q 0.41 tolerated(0.38) benign(0.308) TCGA-CA-6718-01 19 3028946 3028946 G T TLE2 5'UTR 0.28 TCGA-CA-6718-01 19 30303908 30303908 A C CCNE1 Missense_Mutation p.K48N 0.33 tolerated(0.14) benign(0.004) TCGA-CA-6718-01 19 30934504 30934504 C T ZNF536 Missense_Mutation p.S12L 0.36 deleterious_low_confidence(0) benign(0.154) TCGA-CA-6718-01 19 3110302 3110302 A G GNA11 Missense_Mutation p.K98E 0.11 tolerated(0.19) benign(0.007) TCGA-CA-6718-01 19 31768999 31768999 G A TSHZ3 Missense_Mutation p.S567L 0.45 tolerated(0.46) benign(0.005) TCGA-CA-6718-01 19 3282125 3282125 T G CELF5 Missense_Mutation p.L251R 0.25 deleterious(0.03) benign(0.026) TCGA-CA-6718-01 19 33077746 33077746 C A PDCD5 Intron 0.20 TCGA-CA-6718-01 19 33471087 33471087 C T RHPN2 Missense_Mutation p.D626N 0.19 tolerated(0.12) benign(0.032) TCGA-CA-6718-01 19 33872667 33872667 G T CEBPG 3'UTR 0.20 TCGA-CA-6718-01 19 35530575 35530575 G T HPN 5'Flank 0.25 TCGA-CA-6718-01 19 35551551 35551551 G A HPN Missense_Mutation p.R214Q 0.22 tolerated(0.07) benign(0.013) TCGA-CA-6718-01 19 35832691 35832691 G A CD22 Missense_Mutation p.A620T 0.45 deleterious(0) probably_damaging(0.964) TCGA-CA-6718-01 19 3586929 3586929 C A GIPC3 Missense_Mutation p.L177I 0.27 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 19 35941001 35941001 G A FFAR2 Missense_Mutation p.A129T 0.33 tolerated(0.06) probably_damaging(0.974) TCGA-CA-6718-01 19 35998414 35998414 C A DMKN Intron 0.21 TCGA-CA-6718-01 19 3600543 3600543 G A TBXA2R Silent p.F30F 0.38 TCGA-CA-6718-01 19 36211219 36211219 G A KMT2B Missense_Mutation p.E324K 0.34 unknown(0) TCGA-CA-6718-01 19 36304197 36304197 C A PRODH2 5'UTR 0.31 TCGA-CA-6718-01 19 36940878 36940878 C A ZNF566 Missense_Mutation p.K87N 0.20 tolerated(0.12) possibly_damaging(0.451) TCGA-CA-6718-01 19 36964282 36964282 A C ZNF566 Missense_Mutation p.L30V 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 19 37004764 37004764 A G ZNF260 3'UTR 0.44 TCGA-CA-6718-01 19 37038302 37038302 T G ZNF529 Missense_Mutation p.R386S 0.29 tolerated(0.09) probably_damaging(0.963) TCGA-CA-6718-01 19 37117137 37117137 G T ZNF382 Missense_Mutation p.R113I 0.24 deleterious(0) benign(0.425) TCGA-CA-6718-01 19 37117174 37117174 G T ZNF382 Missense_Mutation p.K125N 0.32 tolerated(0.28) benign(0.004) TCGA-CA-6718-01 19 37130563 37130563 A C ZNF461 Silent p.V228V 0.22 TCGA-CA-6718-01 19 37130612 37130612 C A ZNF461 Missense_Mutation p.R212I 0.23 deleterious(0.03) benign(0.043) TCGA-CA-6718-01 19 37155620 37155620 G T ZNF461 5'UTR 0.20 TCGA-CA-6718-01 19 37309268 37309268 G T ZNF790 3'UTR 0.31 TCGA-CA-6718-01 19 37369700 37369700 C A ZNF345 3'UTR 0.26 TCGA-CA-6718-01 19 37382459 37382459 C A ZNF829 Nonsense_Mutation p.E493* 0.24 TCGA-CA-6718-01 19 37441908 37441908 A G ZNF568 Missense_Mutation p.E618G 0.38 deleterious(0.01) benign(0.389) TCGA-CA-6718-01 19 37580003 37580003 C T ZNF420 5'UTR 0.33 TCGA-CA-6718-01 19 37643963 37643963 T C ZNF585A Missense_Mutation p.I225V 0.16 tolerated(0.51) possibly_damaging(0.522) TCGA-CA-6718-01 19 37853015 37853015 G A HKR1 Silent p.S106S 0.19 TCGA-CA-6718-01 19 37904829 37904829 C T ZNF569 Missense_Mutation p.C244Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 19 38055436 38055436 T C ZNF571 3'UTR 0.29 TCGA-CA-6718-01 19 38055644 38055644 T C ZNF571 Silent p.E562E 0.38 TCGA-CA-6718-01 19 38055765 38055765 C A ZNF571 Missense_Mutation p.R522I 0.29 deleterious(0.03) probably_damaging(0.987) TCGA-CA-6718-01 19 38230815 38230815 A G ZNF573 Silent p.C192C 0.15 TCGA-CA-6718-01 19 38377356 38377356 C A WDR87 Missense_Mutation p.V2280L 0.16 unknown(0) TCGA-CA-6718-01 19 38380663 38380663 G C WDR87 Missense_Mutation p.D1177E 0.30 benign(0.015) TCGA-CA-6718-01 19 38951047 38951047 A G RYR1 Missense_Mutation p.E798G 0.28 possibly_damaging(0.694) TCGA-CA-6718-01 19 38958302 38958302 G T RYR1 Missense_Mutation p.E1077D 0.20 possibly_damaging(0.573) TCGA-CA-6718-01 19 39693593 39693593 C A SYCN 3'UTR 0.33 TCGA-CA-6718-01 19 39913900 39913900 G T PLEKHG2 Nonsense_Mutation p.E736* 0.32 TCGA-CA-6718-01 19 40095987 40095987 C G LGALS13 Missense_Mutation p.Q88E 0.32 tolerated(0.42) benign(0.006) TCGA-CA-6718-01 19 40521709 40521709 G T ZNF546 3'UTR 0.32 TCGA-CA-6718-01 19 40540961 40540961 C T ZNF780B Missense_Mutation p.R602Q 0.21 tolerated(0.78) benign(0.001) TCGA-CA-6718-01 19 40580738 40580738 G T ZNF780A Missense_Mutation p.F538L 0.40 deleterious(0.03) benign(0.045) TCGA-CA-6718-01 19 40895492 40895492 C T HIPK4 Silent p.A106A 0.36 TCGA-CA-6718-01 19 41105991 41105991 C T LTBP4 Missense_Mutation p.A120V 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.56) TCGA-CA-6718-01 19 41384805 41384805 G A CYP2A7 Missense_Mutation p.P231S 0.36 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 19 41454994 41454994 C T AC092071.1 3'Flank 0.29 TCGA-CA-6718-01 19 42734894 42734894 C A GSK3A 3'UTR 0.37 TCGA-CA-6718-01 19 42796799 42796799 C T CIC Missense_Mutation p.A1086V 0.23 probably_damaging(0.935) TCGA-CA-6718-01 19 42937144 42937144 G C CXCL17 Silent p.G82G 0.22 TCGA-CA-6718-01 19 43257508 43257508 G T PSG8 3'Flank 0.18 TCGA-CA-6718-01 19 43371740 43371740 G T PSG1 3'UTR 0.26 TCGA-CA-6718-01 19 43575872 43575872 G A PSG2 Missense_Mutation p.S315L 0.31 tolerated(0.06) benign(0.284) TCGA-CA-6718-01 19 43757695 43757695 C A PSG9 3'UTR 0.67 TCGA-CA-6718-01 19 44377600 44377600 G A ZNF404 Nonsense_Mutation p.R256* 0.12 TCGA-CA-6718-01 19 44384169 44384169 G T ZNF404 Silent p.V43V 0.30 TCGA-CA-6718-01 19 44417544 44417544 G A ZNF45 Nonsense_Mutation p.R682* 0.36 TCGA-CA-6718-01 19 44471174 44471174 A C ZNF221 Missense_Mutation p.K507T 0.31 deleterious(0.05) probably_damaging(0.955) TCGA-CA-6718-01 19 44591223 44591223 G T ZNF284 Missense_Mutation p.R531I 0.18 deleterious(0.02) possibly_damaging(0.54) TCGA-CA-6718-01 19 44677275 44677275 C A ZNF226 Intron 0.42 TCGA-CA-6718-01 19 44681812 44681812 A C ZNF226 Missense_Mutation p.K799N 0.31 tolerated_low_confidence(0.12) benign(0.001) TCGA-CA-6718-01 19 44792885 44792885 C A ZNF235 Missense_Mutation p.V235F 0.27 tolerated(0.75) benign(0.206) TCGA-CA-6718-01 19 4496314 4496314 A G HDGFRP2 Missense_Mutation p.K414E 0.24 deleterious(0.03) unknown(0) TCGA-CA-6718-01 19 44980824 44980824 C A ZNF180 Missense_Mutation p.R625I 0.28 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 19 45848716 45848716 T G KLC3 Intron 0.37 TCGA-CA-6718-01 19 46133254 46133254 G T EML2 Silent p.L388L 0.27 TCGA-CA-6718-01 19 48244222 48244222 G A EHD2 Missense_Mutation p.D389N 0.30 deleterious(0) probably_damaging(0.98) TCGA-CA-6718-01 19 48389613 48389613 A C SULT2A1 5'UTR 0.19 TCGA-CA-6718-01 19 4859605 4859605 C A PLIN3 Missense_Mutation p.E115D 0.17 tolerated(0.65) benign(0.042) TCGA-CA-6718-01 19 4902817 4902817 G A ARRDC5 Silent p.I21I 0.28 TCGA-CA-6718-01 19 49436970 49436970 A G DHDH 5'UTR 0.22 TCGA-CA-6718-01 19 49692006 49692006 A G TRPM4 Missense_Mutation p.K618E 0.37 tolerated(0.05) possibly_damaging(0.694) TCGA-CA-6718-01 19 49813652 49813652 G T SLC6A16 Silent p.I177I 0.17 TCGA-CA-6718-01 19 49963000 49963000 C T ALDH16A1 Nonsense_Mutation p.R132* 0.21 TCGA-CA-6718-01 19 50397544 50397544 T C IL4I1 Missense_Mutation p.Y205C 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-CA-6718-01 19 50547943 50547943 G T ZNF473 Missense_Mutation p.K81N 0.33 deleterious(0.01) benign(0.005) TCGA-CA-6718-01 19 50839833 50839833 G A NAPSB RNA 0.22 TCGA-CA-6718-01 19 50979135 50979135 G A FAM71E1 Silent p.F105F 0.25 TCGA-CA-6718-01 19 51628472 51628472 C T SIGLEC9 Missense_Mutation p.R81W 0.35 deleterious(0.01) benign(0.32) TCGA-CA-6718-01 19 51647746 51647746 G A SIGLEC7 Missense_Mutation p.A173T 0.15 deleterious(0.02) possibly_damaging(0.896) TCGA-CA-6718-01 19 51728828 51728828 C A CD33 Missense_Mutation p.S131Y 0.38 tolerated(0.94) benign(0.149) TCGA-CA-6718-01 19 5212461 5212461 A T PTPRS Missense_Mutation p.F1552L 0.31 deleterious(0.02) possibly_damaging(0.892) TCGA-CA-6718-01 19 52132297 52132297 C T SIGLEC5 Missense_Mutation p.G245S 0.28 tolerated(0.77) benign(0.029) TCGA-CA-6718-01 19 52249552 52249552 G A FPR1 Silent p.G232G 0.33 TCGA-CA-6718-01 19 52273421 52273421 A C FPR2 3'UTR 0.26 TCGA-CA-6718-01 19 52375906 52375906 C A ZNF577 Missense_Mutation p.R446I 0.23 deleterious(0) possibly_damaging(0.68) TCGA-CA-6718-01 19 52394376 52394376 C T ZNF649 Missense_Mutation p.R338Q 0.33 tolerated(0.06) possibly_damaging(0.676) TCGA-CA-6718-01 19 52394796 52394796 C T ZNF649 Missense_Mutation p.R198K 0.23 tolerated(0.23) benign(0.002) TCGA-CA-6718-01 19 52439398 52439398 G A ZNF613 5'UTR 0.42 TCGA-CA-6718-01 19 5244208 5244208 G T PTPRS Missense_Mutation p.A425D 0.32 deleterious(0) probably_damaging(0.98) TCGA-CA-6718-01 19 5244387 5244387 G A PTPRS Silent p.I365I 0.36 TCGA-CA-6718-01 19 52469105 52469105 T G ZNF350 Missense_Mutation p.K201Q 0.15 deleterious(0.03) benign(0.011) TCGA-CA-6718-01 19 52496382 52496382 C A ZNF615 Missense_Mutation p.K660N 0.22 tolerated(0.06) benign(0.396) TCGA-CA-6718-01 19 52496694 52496694 A G ZNF615 Silent p.C556C 0.11 TCGA-CA-6718-01 19 52520064 52520064 C A ZNF614 Nonsense_Mutation p.E263* 0.40 TCGA-CA-6718-01 19 52570141 52570141 G T ZNF841 Missense_Mutation p.L332I 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6718-01 19 52619104 52619104 T C ZNF616 Missense_Mutation p.K438R 0.27 deleterious(0.04) benign(0.129) TCGA-CA-6718-01 19 52658375 52658375 C A ZNF836 Missense_Mutation p.R854I 0.27 tolerated(0.05) probably_damaging(0.991) TCGA-CA-6718-01 19 52659819 52659819 G T ZNF836 Missense_Mutation p.L373I 0.21 deleterious(0) probably_damaging(0.924) TCGA-CA-6718-01 19 52793573 52793573 G T ZNF766 Nonsense_Mutation p.E177* 0.38 TCGA-CA-6718-01 19 52794000 52794000 G T ZNF766 Missense_Mutation p.R319I 0.30 tolerated(0.11) possibly_damaging(0.614) TCGA-CA-6718-01 19 52869148 52869148 A G ZNF610 Missense_Mutation p.T173A 0.34 tolerated(0.08) benign(0.003) TCGA-CA-6718-01 19 52869164 52869164 A C ZNF610 Missense_Mutation p.K178T 0.31 tolerated(0.16) possibly_damaging(0.786) TCGA-CA-6718-01 19 52887785 52887785 C A ZNF880 Missense_Mutation p.H318N 0.17 deleterious(0) possibly_damaging(0.793) TCGA-CA-6718-01 19 52888257 52888257 G A ZNF880 Missense_Mutation p.R475Q 0.14 tolerated(1) benign(0.004) TCGA-CA-6718-01 19 52919056 52919056 A C ZNF528 Missense_Mutation p.K317N 0.36 tolerated(0.12) possibly_damaging(0.873) TCGA-CA-6718-01 19 53056494 53056494 G T ZNF808 Nonsense_Mutation p.E109* 0.36 TCGA-CA-6718-01 19 53058685 53058685 G T ZNF808 Missense_Mutation p.R839I 0.16 tolerated(0.08) probably_damaging(0.988) TCGA-CA-6718-01 19 53303370 53303370 C A ZNF28 Missense_Mutation p.E576D 0.32 deleterious(0.02) possibly_damaging(0.524) TCGA-CA-6718-01 19 53304689 53304689 T G ZNF28 Missense_Mutation p.K137Q 0.31 deleterious(0.05) possibly_damaging(0.7) TCGA-CA-6718-01 19 53473322 53473322 G T ZNF702P RNA 0.21 TCGA-CA-6718-01 19 53644505 53644505 A G ZNF347 Missense_Mutation p.S527P 0.25 deleterious(0.02) probably_damaging(0.986) TCGA-CA-6718-01 19 53678787 53678787 G T ZNF665 Missense_Mutation p.S18Y 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 19 53740365 53740365 C A ZNF677 Nonsense_Mutation p.E539* 0.31 TCGA-CA-6718-01 19 53740544 53740544 C A ZNF677 Missense_Mutation p.R479I 0.11 tolerated(0.09) possibly_damaging(0.604) TCGA-CA-6718-01 19 53958717 53958717 T G ZNF761 RNA 0.24 TCGA-CA-6718-01 19 53960307 53960307 C A ZNF761 RNA 0.20 TCGA-CA-6718-01 19 54567022 54567022 C A VSTM1 Nonsense_Mutation p.E4* 0.36 TCGA-CA-6718-01 19 54721209 54721209 C A LILRB3 Missense_Mutation p.E577D 0.33 tolerated(0.27) probably_damaging(0.953) TCGA-CA-6718-01 19 55105924 55105924 G A LILRA1 Missense_Mutation p.R18Q 0.28 deleterious(0.01) possibly_damaging(0.873) TCGA-CA-6718-01 19 55438997 55438997 C A NLRP7 Missense_Mutation p.R986I 0.38 deleterious(0.04) benign(0.411) TCGA-CA-6718-01 19 55603667 55603667 C T PPP1R12C Missense_Mutation p.E695K 0.11 tolerated(0.15) probably_damaging(0.986) TCGA-CA-6718-01 19 55677216 55677216 C T DNAAF3 Intron 0.45 TCGA-CA-6718-01 19 55869610 55869610 G T FAM71E2 Missense_Mutation p.L876I 0.30 tolerated(0.28) benign(0.004) TCGA-CA-6718-01 19 5604801 5604801 C A SAFB2 Missense_Mutation p.E481D 0.21 deleterious(0) benign(0.373) TCGA-CA-6718-01 19 56702344 56702344 G T ZSCAN5B Missense_Mutation p.L201M 0.24 deleterious(0.02) possibly_damaging(0.736) TCGA-CA-6718-01 19 56925357 56925357 A G ZNF583 Silent p.V13V 0.08 TCGA-CA-6718-01 19 56935058 56935058 G T ZNF583 Missense_Mutation p.R344I 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6718-01 19 56935142 56935142 G T ZNF583 Missense_Mutation p.R372I 0.17 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 19 57027728 57027728 A G ZNF471 Missense_Mutation p.R40G 0.27 deleterious(0) benign(0.044) TCGA-CA-6718-01 19 57036281 57036281 G T ZNF471 Missense_Mutation p.R282I 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6718-01 19 57066460 57066460 G A ZFP28 Missense_Mutation p.R769H 0.31 tolerated(0.29) probably_damaging(0.998) TCGA-CA-6718-01 19 57641991 57641991 T C USP29 Missense_Mutation p.S650P 0.14 tolerated(0.34) probably_damaging(0.998) TCGA-CA-6718-01 19 57666728 57666728 T G DUXA Missense_Mutation p.N151H 0.21 deleterious(0) probably_damaging(0.924) TCGA-CA-6718-01 19 57802428 57802428 C T ZNF460 Silent p.F173F 0.20 TCGA-CA-6718-01 19 57868735 57868735 G T ZNF304 Nonsense_Mutation p.E500* 0.16 TCGA-CA-6718-01 19 57868894 57868894 C A ZNF304 Missense_Mutation p.H553N 0.39 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 19 57910687 57910687 A T ZNF548 Missense_Mutation p.K356N 0.46 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 19 57955351 57955351 C A ZNF749 Missense_Mutation p.L279I 0.31 tolerated(0.47) possibly_damaging(0.874) TCGA-CA-6718-01 19 57966735 57966735 T C VN1R1 3'UTR 0.17 TCGA-CA-6718-01 19 58004978 58004978 C A ZNF419 Missense_Mutation p.F352L 0.27 tolerated(0.33) benign(0.294) TCGA-CA-6718-01 19 58005292 58005292 A C ZNF419 Missense_Mutation p.K457T 0.32 deleterious(0.03) benign(0.005) TCGA-CA-6718-01 19 58049259 58049259 G T ZNF549 Missense_Mutation p.R296I 0.21 deleterious(0) possibly_damaging(0.666) TCGA-CA-6718-01 19 58049725 58049725 G A ZNF549 Silent p.G451G 0.29 TCGA-CA-6718-01 19 58083815 58083815 C A ZNF416 Missense_Mutation p.R486I 0.21 deleterious(0) probably_damaging(0.935) TCGA-CA-6718-01 19 58117437 58117437 G T ZNF530 Nonsense_Mutation p.G182* 0.37 TCGA-CA-6718-01 19 58187852 58187852 A C ZSCAN4 Missense_Mutation p.K113N 0.13 deleterious(0.01) possibly_damaging(0.551) TCGA-CA-6718-01 19 58198959 58198959 G T ZNF551 Missense_Mutation p.R439I 0.26 deleterious(0) probably_damaging(0.964) TCGA-CA-6718-01 19 58199561 58199561 G A ZNF551 Missense_Mutation p.E640K 0.25 tolerated(0.05) probably_damaging(0.991) TCGA-CA-6718-01 19 58385264 58385264 C T ZNF814 Silent p.G498G 0.09 TCGA-CA-6718-01 19 58439147 58439147 C A ZNF418 Missense_Mutation p.E134D 0.37 tolerated(0.07) possibly_damaging(0.899) TCGA-CA-6718-01 19 58452768 58452768 T G ZNF256 Missense_Mutation p.K470Q 0.36 deleterious(0) possibly_damaging(0.579) TCGA-CA-6718-01 19 58489802 58489802 G T ZNF606 Missense_Mutation p.S749Y 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6718-01 19 58640652 58640652 C A ZNF329 Missense_Mutation p.L73F 0.36 tolerated(0.74) benign(0.004) TCGA-CA-6718-01 19 6427387 6427387 G A SLC25A41 Silent p.L250L 0.30 TCGA-CA-6718-01 19 6586058 6586058 G T CD70 Missense_Mutation p.F185L 0.38 deleterious(0) possibly_damaging(0.787) TCGA-CA-6718-01 19 6904060 6904060 C T EMR1 Silent p.C272C 0.21 TCGA-CA-6718-01 19 6928249 6928249 G A EMR1 Intron 0.24 TCGA-CA-6718-01 19 7569067 7569067 A T C19orf45 Missense_Mutation p.Q213L 0.21 tolerated(0.07) possibly_damaging(0.597) TCGA-CA-6718-01 19 7607476 7607476 G T PNPLA6 Missense_Mutation p.D437Y 0.21 deleterious(0) probably_damaging(0.964) TCGA-CA-6718-01 19 7734318 7734318 G A RETN Missense_Mutation p.A36T 0.28 tolerated(0.83) benign(0.005) TCGA-CA-6718-01 19 7805539 7805539 G T CD209 3'UTR 0.18 TCGA-CA-6718-01 19 8152733 8152733 G A FBN3 Missense_Mutation p.R2199W 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 19 8808493 8808493 C T ACTL9 Missense_Mutation p.A187T 0.22 deleterious(0) possibly_damaging(0.774) TCGA-CA-6718-01 19 8976802 8976802 A C MUC16 Nonsense_Mutation p.Y14088* 0.23 TCGA-CA-6718-01 19 9048113 9048113 G T MUC16 Missense_Mutation p.S11173Y 0.22 benign(0.039) TCGA-CA-6718-01 19 9049106 9049106 A C MUC16 Missense_Mutation p.F10842C 0.32 benign(0.027) TCGA-CA-6718-01 19 9061156 9061156 C T MUC16 Missense_Mutation p.E8764K 0.31 unknown(0) TCGA-CA-6718-01 19 9063192 9063192 G T MUC16 Missense_Mutation p.S8085Y 0.39 unknown(0) TCGA-CA-6718-01 19 9064213 9064213 T G MUC16 Missense_Mutation p.S7745R 0.15 unknown(0) TCGA-CA-6718-01 19 9064732 9064732 T C MUC16 Missense_Mutation p.T7572A 0.31 unknown(0) TCGA-CA-6718-01 19 9068734 9068734 A G MUC16 Missense_Mutation p.S6238P 0.35 unknown(0) TCGA-CA-6718-01 19 9071885 9071885 G T MUC16 Missense_Mutation p.F5187L 0.36 unknown(0) TCGA-CA-6718-01 19 9074001 9074001 G A MUC16 Missense_Mutation p.A4482V 0.26 unknown(0) TCGA-CA-6718-01 19 9074867 9074867 G T MUC16 Missense_Mutation p.F4193L 0.12 unknown(0) TCGA-CA-6718-01 19 9088567 9088567 G A MUC16 Missense_Mutation p.S1083F 0.35 unknown(0) TCGA-CA-6718-01 19 9090539 9090539 C A MUC16 Nonsense_Mutation p.G426* 0.40 TCGA-CA-6718-01 19 9090653 9090653 C A MUC16 Nonsense_Mutation p.E388* 0.27 TCGA-CA-6718-01 19 9226253 9226253 G T OR7G1 Missense_Mutation p.L63I 0.25 deleterious(0.05) possibly_damaging(0.504) TCGA-CA-6718-01 19 9298241 9298241 C A OR7D2 3'UTR 0.28 TCGA-CA-6718-01 19 9298531 9298531 G T OR7D2 3'UTR 0.23 TCGA-CA-6718-01 19 9449979 9449979 G T ZNF559 Missense_Mutation p.K48N 0.24 deleterious(0.01) benign(0.061) TCGA-CA-6718-01 19 9577932 9577932 C T ZNF560 Missense_Mutation p.R564Q 0.27 deleterious(0.02) possibly_damaging(0.88) TCGA-CA-6718-01 19 9578754 9578754 T G ZNF560 Missense_Mutation p.K290T 0.32 deleterious(0.03) possibly_damaging(0.727) TCGA-CA-6718-01 19 9581975 9581975 T C ZNF560 Silent p.Q106Q 0.29 TCGA-CA-6718-01 19 9645916 9645916 T C ZNF426 Missense_Mutation p.E22G 0.18 deleterious(0.03) possibly_damaging(0.538) TCGA-CA-6718-01 19 9728786 9728786 T G ZNF561 Missense_Mutation p.Y32S 0.27 tolerated(0.37) benign(0.001) TCGA-CA-6718-01 19 9763662 9763662 C T ZNF562 Missense_Mutation p.R415H 0.17 deleterious(0.05) benign(0.01) TCGA-CA-6718-01 19 9801018 9801018 C T ZNF812 Silent p.R387R 0.27 TCGA-CA-6718-01 19 9801272 9801272 T C ZNF812 Missense_Mutation p.K303E 0.30 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 19 9801513 9801513 C A ZNF812 Missense_Mutation p.K222N 0.21 tolerated(0.07) possibly_damaging(0.632) TCGA-CA-6718-01 1 100127876 100127876 A G PALMD Missense_Mutation p.D16G 0.21 deleterious(0.01) possibly_damaging(0.84) TCGA-CA-6718-01 1 100159609 100159609 G A PALMD Silent p.K549K 0.26 TCGA-CA-6718-01 1 100621834 100621834 T C LRRC39 Missense_Mutation p.M185V 0.24 tolerated(0.37) benign(0.152) TCGA-CA-6718-01 1 100736180 100736180 C A RTCA Missense_Mutation p.H133N 0.30 tolerated(0.37) benign(0) TCGA-CA-6718-01 1 101006412 101006412 A C GPR88 3'UTR 0.14 TCGA-CA-6718-01 1 104114023 104114023 C A AMY2B Intron 0.27 TCGA-CA-6718-01 1 10460573 10460573 C T PGD Missense_Mutation p.R70W 0.26 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 1 107601253 107601253 C A PRMT6 3'UTR 0.30 TCGA-CA-6718-01 1 107867363 107867363 C A NTNG1 Missense_Mutation p.R236S 0.25 tolerated(0.19) benign(0.39) TCGA-CA-6718-01 1 108291645 108291645 A T VAV3 Missense_Mutation p.Y483N 0.24 deleterious(0) possibly_damaging(0.861) TCGA-CA-6718-01 1 108679206 108679206 C T SLC25A24 3'UTR 0.29 TCGA-CA-6718-01 1 109465140 109465140 G T GPSM2 Missense_Mutation p.K514N 0.30 tolerated(0.44) benign(0.002) TCGA-CA-6718-01 1 109837867 109837867 T C MYBPHL Missense_Mutation p.Y307C 0.29 deleterious(0) probably_damaging(0.992) TCGA-CA-6718-01 1 110563388 110563388 G T AHCYL1 Missense_Mutation p.D501Y 0.31 deleterious(0.01) probably_damaging(0.976) TCGA-CA-6718-01 1 110593021 110593021 C T STRIP1 Missense_Mutation p.A649V 0.33 tolerated(0.15) possibly_damaging(0.899) TCGA-CA-6718-01 1 110738284 110738284 C T SLC6A17 Silent p.F523F 0.43 TCGA-CA-6718-01 1 111145997 111145997 C A KCNA2 Nonsense_Mutation p.E470* 0.33 TCGA-CA-6718-01 1 1114698 1114698 C T TTLL10 Missense_Mutation p.R35W 0.52 tolerated_low_confidence(0.05) benign(0.003) TCGA-CA-6718-01 1 111490460 111490460 G A LRIF1 3'UTR 0.33 TCGA-CA-6718-01 1 111726868 111726868 C T CEPT1 Missense_Mutation p.A396V 0.38 deleterious(0) probably_damaging(0.943) TCGA-CA-6718-01 1 111773492 111773492 G A CHI3L2 Missense_Mutation p.E67K 0.33 tolerated(0.32) benign(0.001) TCGA-CA-6718-01 1 111854964 111854964 G A CHIA Missense_Mutation p.E70K 0.33 deleterious(0.02) benign(0.063) TCGA-CA-6718-01 1 111956991 111956991 T G OVGP1 3'UTR 0.50 TCGA-CA-6718-01 1 111992020 111992020 A T ATP5F1 5'UTR 0.33 TCGA-CA-6718-01 1 111996944 111996944 C A ATP5F1 Missense_Mutation p.F63L 0.23 tolerated(0.24) benign(0.325) TCGA-CA-6718-01 1 112031338 112031338 C T ADORA3 Missense_Mutation p.D256N 0.19 tolerated_low_confidence(1) benign(0) TCGA-CA-6718-01 1 1120422 1120422 G A TTLL10 Missense_Mutation p.R445H 0.34 tolerated(0.06) benign(0.211) TCGA-CA-6718-01 1 112308673 112308673 G A DDX20 Missense_Mutation p.E543K 0.22 tolerated(0.46) benign(0.006) TCGA-CA-6718-01 1 114215270 114215270 C T MAGI3 Silent p.V984V 0.12 TCGA-CA-6718-01 1 114450784 114450784 G A DCLRE1B Missense_Mutation p.R170Q 0.38 tolerated(0.13) benign(0.119) TCGA-CA-6718-01 1 114511128 114511128 A G HIPK1 Missense_Mutation p.T877A 0.25 tolerated(0.56) benign(0.001) TCGA-CA-6718-01 1 115123963 115123963 T G BCAS2 Missense_Mutation p.N48T 0.29 deleterious(0) benign(0.057) TCGA-CA-6718-01 1 115130062 115130062 C T DENND2C Missense_Mutation p.E901K 0.30 deleterious(0.02) benign(0.081) TCGA-CA-6718-01 1 115217458 115217458 T C AMPD1 Missense_Mutation p.H605R 0.12 deleterious(0) possibly_damaging(0.807) TCGA-CA-6718-01 1 115226923 115226923 C A AMPD1 Missense_Mutation p.E181D 0.28 tolerated(0.08) probably_damaging(0.997) TCGA-CA-6718-01 1 115267948 115267948 G T CSDE1 Missense_Mutation p.F595L 0.17 tolerated(0.15) benign(0.001) TCGA-CA-6718-01 1 115438118 115438118 G T SYCP1 Missense_Mutation p.L436F 0.23 deleterious(0.05) probably_damaging(0.941) TCGA-CA-6718-01 1 115455732 115455732 T C SYCP1 Silent p.D536D 0.17 TCGA-CA-6718-01 1 115576076 115576076 C T TSHB Silent p.I31I 0.26 TCGA-CA-6718-01 1 116202304 116202304 C T VANGL1 Silent p.D38D 0.33 TCGA-CA-6718-01 1 116206633 116206633 C T VANGL1 Missense_Mutation p.R186C 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 116243803 116243803 C T CASQ2 3'UTR 0.30 TCGA-CA-6718-01 1 117311230 117311230 G T CD2 Missense_Mutation p.S294I 0.18 deleterious(0.02) benign(0.214) TCGA-CA-6718-01 1 117690401 117690401 G A VTCN1 Missense_Mutation p.S243L 0.28 tolerated(0.47) benign(0.099) TCGA-CA-6718-01 1 118167367 118167367 C A FAM46C 3'UTR 0.27 TCGA-CA-6718-01 1 118426184 118426184 A C GDAP2 Missense_Mutation p.F391L 0.19 deleterious(0.05) probably_damaging(0.996) TCGA-CA-6718-01 1 118539038 118539038 C A SPAG17 Nonsense_Mutation p.E1670* 0.26 TCGA-CA-6718-01 1 118598355 118598355 C A SPAG17 Splice_Site p.X908_splice 0.39 TCGA-CA-6718-01 1 118598485 118598485 C A SPAG17 Nonsense_Mutation p.E865* 0.19 TCGA-CA-6718-01 1 120927302 120927302 C A FCGR1B Missense_Mutation p.K226N 0.23 deleterious(0.03) benign(0.006) TCGA-CA-6718-01 1 12248917 12248917 A G TNFRSF1B Missense_Mutation p.Q48R 0.23 tolerated(0.21) benign(0.004) TCGA-CA-6718-01 1 12336393 12336393 G T VPS13D Missense_Mutation p.K916N 0.25 benign(0.001) TCGA-CA-6718-01 1 1236045 1236045 C A ACAP3 Missense_Mutation p.K122N 0.32 deleterious(0.02) possibly_damaging(0.889) TCGA-CA-6718-01 1 12907395 12907395 C A HNRNPCL1 Nonsense_Mutation p.E250* 0.15 TCGA-CA-6718-01 1 12908209 12908209 C A HNRNPCL1 5'UTR 0.12 TCGA-CA-6718-01 1 13717100 13717100 G T PRAMEF17 Missense_Mutation p.R196I 0.20 tolerated(0.07) benign(0.39) TCGA-CA-6718-01 1 144852497 144852497 C A PDE4DIP Intron 0.18 TCGA-CA-6718-01 1 144855862 144855862 G T PDE4DIP Missense_Mutation p.H2231N 0.25 tolerated(0.1) benign(0.096) TCGA-CA-6718-01 1 144915524 144915524 C A PDE4DIP Missense_Mutation p.R634L 0.11 deleterious(0.02) benign(0.045) TCGA-CA-6718-01 1 145115850 145115850 C T SEC22B RNA 0.08 TCGA-CA-6718-01 1 145115918 145115918 G T SEC22B RNA 0.09 TCGA-CA-6718-01 1 145417211 145417211 T G HFE2 3'UTR 0.38 TCGA-CA-6718-01 1 145417466 145417466 G T HFE2 3'UTR 0.24 TCGA-CA-6718-01 1 145537545 145537545 T C ITGA10 Missense_Mutation p.L852P 0.33 deleterious(0) probably_damaging(0.972) TCGA-CA-6718-01 1 145566746 145566746 G T ANKRD35 Nonsense_Mutation p.E950* 0.22 TCGA-CA-6718-01 1 145596919 145596919 A C POLR3C Missense_Mutation p.N402K 0.26 tolerated(0.12) benign(0.327) TCGA-CA-6718-01 1 146696613 146696613 C A FMO5 Missense_Mutation p.K3N 0.33 tolerated(0.32) benign(0.01) TCGA-CA-6718-01 1 147091096 147091096 G T BCL9 Nonsense_Mutation p.E379* 0.37 TCGA-CA-6718-01 1 149903896 149903896 G A MTMR11 Nonsense_Mutation p.R355* 0.26 TCGA-CA-6718-01 1 150204119 150204119 C T ANP32E Missense_Mutation p.R67Q 0.24 tolerated(0.09) possibly_damaging(0.545) TCGA-CA-6718-01 1 150237022 150237022 T G CA14 Missense_Mutation p.V326G 0.20 deleterious(0) probably_damaging(0.962) TCGA-CA-6718-01 1 150316647 150316647 C A PRPF3 Missense_Mutation p.S479Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 150318520 150318520 A C PRPF3 Missense_Mutation p.K556T 0.24 deleterious(0) probably_damaging(0.98) TCGA-CA-6718-01 1 150318906 150318906 T G PRPF3 Missense_Mutation p.F594L 0.31 deleterious(0.03) benign(0.169) TCGA-CA-6718-01 1 150485808 150485808 C A ECM1 Silent p.V523V 0.20 TCGA-CA-6718-01 1 150528719 150528719 C T ADAMTSL4 Missense_Mutation p.R485C 0.23 deleterious(0) probably_damaging(0.967) TCGA-CA-6718-01 1 150600053 150600053 C A ENSA Nonsense_Mutation p.E25* 0.31 TCGA-CA-6718-01 1 151020712 151020712 A C C1orf56 Missense_Mutation p.N130T 0.30 tolerated(0.67) benign(0) TCGA-CA-6718-01 1 152190845 152190845 G A HRNR Missense_Mutation p.S1087L 0.23 unknown(0) TCGA-CA-6718-01 1 152193725 152193725 A C HRNR Missense_Mutation p.F127C 0.31 probably_damaging(0.959) TCGA-CA-6718-01 1 152279706 152279706 T C FLG Silent p.G2552G 0.24 TCGA-CA-6718-01 1 152280734 152280734 G T FLG Missense_Mutation p.H2210N 0.20 benign(0.322) TCGA-CA-6718-01 1 152329484 152329484 C A FLG2 Nonsense_Mutation p.E260* 0.21 TCGA-CA-6718-01 1 152384674 152384674 G A CRNN Silent p.I12I 0.16 TCGA-CA-6718-01 1 152488439 152488439 G T CRCT1 3'UTR 0.28 TCGA-CA-6718-01 1 152734460 152734460 T C KPRP 3'UTR 0.23 TCGA-CA-6718-01 1 152777682 152777682 C A LCE1C Missense_Mutation p.Q91H 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CA-6718-01 1 153085150 153085150 C T SPRR2F Silent p.A20A 0.23 TCGA-CA-6718-01 1 153516108 153516108 G T S100A4 3'UTR 0.36 TCGA-CA-6718-01 1 153587343 153587343 G T S100A14 3'UTR 0.19 TCGA-CA-6718-01 1 15361354 15361354 C A KAZN Missense_Mutation p.F176L 0.36 deleterious(0.01) benign(0.007) TCGA-CA-6718-01 1 153912095 153912095 G A DENND4B Missense_Mutation p.R597C 0.19 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 1 154458462 154458462 G A SHE Nonsense_Mutation p.R420* 0.40 TCGA-CA-6718-01 1 154524926 154524926 C T UBE2Q1 Missense_Mutation p.E277K 0.37 deleterious(0) benign(0.435) TCGA-CA-6718-01 1 155110037 155110037 C T SLC50A1 Missense_Mutation p.R95C 0.25 deleterious(0.03) benign(0.043) TCGA-CA-6718-01 1 155154615 155154615 A C TRIM46 Missense_Mutation p.I626L 0.24 tolerated(0.09) benign(0.008) TCGA-CA-6718-01 1 155179011 155179011 A C MTX1 Missense_Mutation p.K139T 0.40 tolerated_low_confidence(0.4) benign(0.023) TCGA-CA-6718-01 1 155348300 155348300 G A ASH1L Missense_Mutation p.R2073C 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CA-6718-01 1 155838071 155838071 C A SYT11 Missense_Mutation p.S117Y 0.27 tolerated(0.07) benign(0.225) TCGA-CA-6718-01 1 155884194 155884194 G T KIAA0907 Intron 0.35 TCGA-CA-6718-01 1 156244428 156244428 C T SMG5 Silent p.Q168Q 0.20 TCGA-CA-6718-01 1 156563794 156563794 T G APOA1BP Missense_Mutation p.F262C 0.26 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 156641398 156641398 T C NES Missense_Mutation p.N861S 0.17 tolerated(0.06) benign(0.001) TCGA-CA-6718-01 1 156821516 156821516 C T INSRR Missense_Mutation p.D336N 0.24 deleterious(0.02) possibly_damaging(0.745) TCGA-CA-6718-01 1 157103857 157103857 C A ETV3 Intron 0.30 TCGA-CA-6718-01 1 157497563 157497563 G T FCRL5 Missense_Mutation p.H602N 0.24 deleterious(0.01) possibly_damaging(0.881) TCGA-CA-6718-01 1 157545196 157545196 G T FCRL4 3'UTR 0.32 TCGA-CA-6718-01 1 157648460 157648460 T G FCRL3 3'UTR 0.41 TCGA-CA-6718-01 1 157739894 157739894 G A FCRL2 Silent p.I119I 0.33 TCGA-CA-6718-01 1 157765878 157765878 C A FCRL1 3'UTR 0.35 TCGA-CA-6718-01 1 158299820 158299820 A G CD1B Silent p.S143S 0.29 TCGA-CA-6718-01 1 158300817 158300817 T C CD1B Missense_Mutation p.T33A 0.28 deleterious(0.02) benign(0.011) TCGA-CA-6718-01 1 15831194 15831194 G A CASP9 Silent p.V260V 0.17 TCGA-CA-6718-01 1 158532800 158532800 C A OR6P1 Missense_Mutation p.D199Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 158532861 158532861 G T OR6P1 Missense_Mutation p.F178L 0.30 deleterious(0) benign(0.291) TCGA-CA-6718-01 1 158622332 158622332 C A SPTA1 Missense_Mutation p.E1100D 0.14 tolerated(0.58) benign(0.09) TCGA-CA-6718-01 1 158670233 158670233 C A OR6K2 Missense_Mutation p.E70D 0.25 deleterious(0) probably_damaging(0.987) TCGA-CA-6718-01 1 158687504 158687504 C A OR6K3 Missense_Mutation p.M134I 0.25 tolerated(0.18) benign(0.001) TCGA-CA-6718-01 1 158746746 158746746 T G OR6N2 Missense_Mutation p.K227T 0.32 deleterious(0.01) benign(0.349) TCGA-CA-6718-01 1 158747230 158747230 G T OR6N2 Missense_Mutation p.L66I 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6718-01 1 158990257 158990257 T G IFI16 Missense_Mutation p.F367V 0.26 deleterious(0) probably_damaging(0.924) TCGA-CA-6718-01 1 159409668 159409668 C T OR10J1 Silent p.G40G 0.27 TCGA-CA-6718-01 1 159409730 159409730 G A OR10J1 Missense_Mutation p.R61Q 0.27 tolerated(0.31) benign(0.059) TCGA-CA-6718-01 1 159505105 159505105 C A OR10J5 Missense_Mutation p.E231D 0.23 deleterious(0.03) possibly_damaging(0.689) TCGA-CA-6718-01 1 159558139 159558139 G A APCS Missense_Mutation p.E105K 0.18 tolerated(0.05) probably_damaging(0.996) TCGA-CA-6718-01 1 159684337 159684337 C T CRP 5'UTR 0.28 TCGA-CA-6718-01 1 159847218 159847218 C A CCDC19 Missense_Mutation p.R360I 0.24 deleterious(0) probably_damaging(0.945) TCGA-CA-6718-01 1 159889607 159889607 T G TAGLN2 Missense_Mutation p.N67H 0.33 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 1 160001238 160001238 G T PIGM Missense_Mutation p.L98I 0.17 tolerated(0.13) benign(0.319) TCGA-CA-6718-01 1 160309764 160309764 G A COPA Nonsense_Mutation p.R55* 0.31 TCGA-CA-6718-01 1 160319351 160319351 G T NCSTN Missense_Mutation p.E109D 0.30 tolerated(0.46) benign(0.005) TCGA-CA-6718-01 1 160456471 160456471 G A SLAMF6 3'UTR 0.32 TCGA-CA-6718-01 1 16063099 16063099 T C SLC25A34 Missense_Mutation p.L40P 0.32 deleterious(0) probably_damaging(0.988) TCGA-CA-6718-01 1 160920398 160920398 C T ITLN2 Missense_Mutation p.R182H 0.31 tolerated(0.86) benign(0.005) TCGA-CA-6718-01 1 161018739 161018739 T G ARHGAP30 Missense_Mutation p.D691A 0.31 tolerated_low_confidence(0.18) benign(0.003) TCGA-CA-6718-01 1 161070589 161070589 C A PFDN2 Nonsense_Mutation p.E117* 0.22 TCGA-CA-6718-01 1 161136973 161136973 A G PPOX Silent p.G57G 0.31 TCGA-CA-6718-01 1 161137223 161137223 G T PPOX Missense_Mutation p.Q95H 0.31 deleterious(0.01) benign(0.375) TCGA-CA-6718-01 1 161514697 161514697 A C FCGR3A Missense_Mutation p.I160S 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 161596073 161596073 C A FCGR3B Missense_Mutation p.D183Y 0.22 tolerated(0.17) benign(0.011) TCGA-CA-6718-01 1 162549299 162549299 G T UAP1 Missense_Mutation p.E189D 0.36 tolerated(0.36) benign(0.001) TCGA-CA-6718-01 1 163325277 163325277 C A NUF2 3'UTR 0.26 TCGA-CA-6718-01 1 16386473 16386473 G A FAM131C Silent p.I114I 0.17 TCGA-CA-6718-01 1 1650802 1650802 T C CDK11A Missense_Mutation p.E107G 0.21 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-CA-6718-01 1 165638674 165638674 C T ALDH9A1 Missense_Mutation p.G315D 0.30 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 1 166815882 166815882 T A POGK Missense_Mutation p.F56I 0.23 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CA-6718-01 1 166990362 166990362 C A MAEL Missense_Mutation p.S361Y 0.11 tolerated(0.43) benign(0.002) TCGA-CA-6718-01 1 166990952 166990952 C T MAEL Missense_Mutation p.R389W 0.28 deleterious(0) benign(0.359) TCGA-CA-6718-01 1 167666378 167666378 C T RCSD1 Nonsense_Mutation p.R173* 0.26 TCGA-CA-6718-01 1 167734861 167734861 G T MPZL1 Nonsense_Mutation p.E45* 0.29 TCGA-CA-6718-01 1 167741567 167741567 A G MPZL1 Missense_Mutation p.D105G 0.15 tolerated(0.09) benign(0.083) TCGA-CA-6718-01 1 168034834 168034834 G T DCAF6 Nonsense_Mutation p.E816* 0.23 TCGA-CA-6718-01 1 168055024 168055024 C A GPR161 Missense_Mutation p.K465N 0.43 tolerated_low_confidence(0.46) benign(0.004) TCGA-CA-6718-01 1 168073783 168073783 G T GPR161 Missense_Mutation p.F122L 0.26 tolerated(0.19) possibly_damaging(0.621) TCGA-CA-6718-01 1 169391282 169391282 C T CCDC181 Silent p.E129E 0.34 TCGA-CA-6718-01 1 169484771 169484771 C T F5 Missense_Mutation p.E2147K 0.30 deleterious(0) probably_damaging(0.976) TCGA-CA-6718-01 1 169509589 169509589 C A F5 Missense_Mutation p.R1580I 0.32 deleterious(0) possibly_damaging(0.847) TCGA-CA-6718-01 1 169512010 169512010 A G F5 Missense_Mutation p.V773A 0.29 tolerated(0.52) benign(0.009) TCGA-CA-6718-01 1 169512316 169512316 C A F5 Missense_Mutation p.R671I 0.15 deleterious(0.01) probably_damaging(0.943) TCGA-CA-6718-01 1 169586339 169586339 G T SELP Silent p.I136I 0.21 TCGA-CA-6718-01 1 1696834 1696834 T G NADK Missense_Mutation p.E4D 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.636) TCGA-CA-6718-01 1 169698656 169698656 A G SELE Missense_Mutation p.W292R 0.28 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 169947287 169947287 A C KIFAP3 Missense_Mutation p.I612M 0.31 tolerated(0.06) benign(0.054) TCGA-CA-6718-01 1 170967331 170967331 G T MROH9 Missense_Mutation p.E504D 0.31 deleterious(0.03) benign(0.149) TCGA-CA-6718-01 1 170993552 170993552 G A MROH9 Missense_Mutation p.R642Q 0.25 tolerated(0.12) possibly_damaging(0.46) TCGA-CA-6718-01 1 171519335 171519335 T C PRRC2C Silent p.L1693L 0.30 TCGA-CA-6718-01 1 171519367 171519367 A G PRRC2C Silent p.E1703E 0.31 TCGA-CA-6718-01 1 171956894 171956894 A G DNM3 Missense_Mutation p.N112D 0.18 deleterious(0.02) probably_damaging(0.946) TCGA-CA-6718-01 1 172522472 172522472 G T SUCO Nonsense_Mutation p.E84* 0.24 TCGA-CA-6718-01 1 17257810 17257810 G A CROCC Missense_Mutation p.E292K 0.18 probably_damaging(0.991) TCGA-CA-6718-01 1 173517585 173517585 A C SLC9C2 Missense_Mutation p.I468M 0.29 tolerated(0.17) benign(0.062) TCGA-CA-6718-01 1 174188365 174188365 G T RABGAP1L Nonsense_Mutation p.E24* 0.07 TCGA-CA-6718-01 1 175293629 175293629 G A TNR Missense_Mutation p.R1274C 0.21 deleterious(0) probably_damaging(0.993) TCGA-CA-6718-01 1 176681111 176681111 G A PAPPA2 Nonsense_Mutation p.W1264* 0.35 TCGA-CA-6718-01 1 178063817 178063817 G A RASAL2 Missense_Mutation p.V64I 0.31 tolerated_low_confidence(0.24) benign(0.001) TCGA-CA-6718-01 1 178411980 178411980 C A RASAL2 Missense_Mutation p.F366L 0.09 tolerated(0.13) probably_damaging(0.994) TCGA-CA-6718-01 1 178855177 178855177 G A RALGPS2 Missense_Mutation p.D372N 0.07 deleterious(0.05) probably_damaging(1) TCGA-CA-6718-01 1 178871280 178871280 T C RALGPS2 Missense_Mutation p.W522R 0.30 deleterious(0) probably_damaging(0.957) TCGA-CA-6718-01 1 179087844 179087844 C T ABL2 Silent p.G367G 0.20 TCGA-CA-6718-01 1 179380363 179380363 G T AXDND1 Missense_Mutation p.D398Y 0.20 deleterious(0) probably_damaging(0.953) TCGA-CA-6718-01 1 179398663 179398663 G T AXDND1 Missense_Mutation p.R414I 0.33 deleterious(0) benign(0.267) TCGA-CA-6718-01 1 179414185 179414185 A G AXDND1 Silent p.L548L 0.32 TCGA-CA-6718-01 1 179414309 179414309 G T AXDND1 Nonsense_Mutation p.E590* 0.20 TCGA-CA-6718-01 1 179478460 179478460 C T AXDND1 Silent p.C806C 0.09 TCGA-CA-6718-01 1 179816741 179816741 T G TOR1AIP2 Missense_Mutation p.K195T 0.24 tolerated(0.63) benign(0.008) TCGA-CA-6718-01 1 179983105 179983105 C A CEP350 Nonsense_Mutation p.S506* 0.28 TCGA-CA-6718-01 1 180062034 180062034 A C CEP350 Missense_Mutation p.K2265T 0.33 benign(0.021) TCGA-CA-6718-01 1 180165905 180165905 G T QSOX1 Missense_Mutation p.K659N 0.30 tolerated(0.13) benign(0.201) TCGA-CA-6718-01 1 181018257 181018257 C T MR1 Missense_Mutation p.S46L 0.33 tolerated(0.1) probably_damaging(0.999) TCGA-CA-6718-01 1 182443104 182443104 G T RGSL1 Missense_Mutation p.E286D 0.33 tolerated(0.14) benign(0.01) TCGA-CA-6718-01 1 182545518 182545518 C A RNASEL Nonsense_Mutation p.E638* 0.31 TCGA-CA-6718-01 1 182555098 182555098 C A RNASEL Nonsense_Mutation p.E282* 0.28 TCGA-CA-6718-01 1 182908611 182908611 C A SHCBP1L Missense_Mutation p.R283I 0.31 deleterious(0) possibly_damaging(0.861) TCGA-CA-6718-01 1 183616947 183616947 G T APOBEC4 Missense_Mutation p.Q324K 0.21 tolerated(0.65) benign(0.416) TCGA-CA-6718-01 1 183914602 183914602 G A COLGALT2 Silent p.I411I 0.32 TCGA-CA-6718-01 1 184041983 184041983 A C TSEN15 3'UTR 0.08 TCGA-CA-6718-01 1 184775151 184775151 A C FAM129A Missense_Mutation p.S459A 0.31 tolerated(0.31) benign(0.012) TCGA-CA-6718-01 1 185069329 185069329 T G RNF2 Intron 0.27 TCGA-CA-6718-01 1 185143546 185143546 C T SWT1 Silent p.I89I 0.32 TCGA-CA-6718-01 1 185278640 185278640 T G IVNS1ABP 5'UTR 0.33 TCGA-CA-6718-01 1 185984525 185984525 A G HMCN1 Missense_Mutation p.N1622S 0.21 probably_damaging(0.996) TCGA-CA-6718-01 1 186008934 186008934 G T HMCN1 Missense_Mutation p.A2035S 0.23 probably_damaging(0.996) TCGA-CA-6718-01 1 186088427 186088427 C A HMCN1 Missense_Mutation p.H3985N 0.28 benign(0.013) TCGA-CA-6718-01 1 186270746 186270746 C A PRG4 Nonsense_Mutation p.C74* 0.23 TCGA-CA-6718-01 1 186915792 186915792 G A PLA2G4A Missense_Mutation p.E353K 0.30 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 186925296 186925296 C T PLA2G4A Missense_Mutation p.R467C 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-CA-6718-01 1 18809656 18809656 C T KLHDC7A Silent p.C727C 0.32 TCGA-CA-6718-01 1 190067897 190067897 C A BRINP3 Missense_Mutation p.D518Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 1 190423889 190423889 G A BRINP3 Silent p.F44F 0.40 TCGA-CA-6718-01 1 192153567 192153567 C A RGS18 Silent p.I197I 0.35 TCGA-CA-6718-01 1 192628691 192628691 A G RGS13 3'UTR 0.32 TCGA-CA-6718-01 1 19504000 19504000 A G UBR4 Silent p.Y864Y 0.27 TCGA-CA-6718-01 1 196887466 196887466 C T CFHR4 Missense_Mutation p.A555V 0.25 tolerated(0.29) possibly_damaging(0.499) TCGA-CA-6718-01 1 196953104 196953104 T C CFHR5 Silent p.F89F 0.25 TCGA-CA-6718-01 1 197094003 197094003 A G ASPM Silent p.F1055F 0.27 TCGA-CA-6718-01 1 197160904 197160904 C A ZBTB41 Nonsense_Mutation p.E416* 0.22 TCGA-CA-6718-01 1 197169111 197169111 A C ZBTB41 Missense_Mutation p.L165V 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CA-6718-01 1 197326052 197326052 G T CRB1 Missense_Mutation p.E360D 0.30 tolerated(0.21) possibly_damaging(0.489) TCGA-CA-6718-01 1 198721444 198721444 G T PTPRC Missense_Mutation p.D1092Y 0.24 deleterious(0) probably_damaging(0.969) TCGA-CA-6718-01 1 19992848 19992848 C T HTR6 Missense_Mutation p.S201L 0.17 tolerated(0.44) benign(0.321) TCGA-CA-6718-01 1 200522477 200522477 C A KIF14 3'UTR 0.39 TCGA-CA-6718-01 1 201190710 201190710 T C IGFN1 Missense_Mutation p.L3346P 0.20 possibly_damaging(0.731) TCGA-CA-6718-01 1 201294947 201294947 T G PKP1 Missense_Mutation p.L717R 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 201751899 201751899 C T NAV1 Silent p.I753I 0.11 TCGA-CA-6718-01 1 202887482 202887482 A G KLHL12 Silent p.S128S 0.24 TCGA-CA-6718-01 1 203696703 203696703 C T ATP2B4 Intron 0.32 TCGA-CA-6718-01 1 203734645 203734645 A C LAX1 5'UTR 0.30 TCGA-CA-6718-01 1 203798630 203798630 A T ZC3H11A Missense_Mutation p.Q117L 0.25 tolerated(0.05) benign(0.162) TCGA-CA-6718-01 1 203802967 203802967 G A ZC3H11A Missense_Mutation p.R287Q 0.21 deleterious(0.03) benign(0.286) TCGA-CA-6718-01 1 203816316 203816316 A C ZC3H11A Missense_Mutation p.K349N 0.21 tolerated(0.07) benign(0.038) TCGA-CA-6718-01 1 204590823 204590823 G A LRRN2 5'UTR 0.26 TCGA-CA-6718-01 1 204953238 204953238 G A NFASC Intron 0.15 TCGA-CA-6718-01 1 205767142 205767142 G T SLC41A1 Missense_Mutation p.F294L 0.21 tolerated(0.26) benign(0) TCGA-CA-6718-01 1 206764999 206764999 T G EIF2D 3'UTR 0.28 TCGA-CA-6718-01 1 206858838 206858838 G T MAPKAPK2 Missense_Mutation p.E88D 0.29 tolerated(0.25) benign(0.001) TCGA-CA-6718-01 1 206904055 206904055 G T MAPKAPK2 Missense_Mutation p.E238D 0.22 deleterious(0.04) benign(0.068) TCGA-CA-6718-01 1 207651311 207651311 T G CR2 Missense_Mutation p.V995G 0.25 deleterious(0) possibly_damaging(0.617) TCGA-CA-6718-01 1 207679266 207679266 G T CR1 Nonsense_Mutation p.E47* 0.27 TCGA-CA-6718-01 1 207782912 207782912 C A CR1 Missense_Mutation p.F2058L 0.25 tolerated(1) benign(0.003) TCGA-CA-6718-01 1 210016897 210016897 G A DIEXF Missense_Mutation p.R628Q 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 210017023 210017023 G A DIEXF Missense_Mutation p.R670H 0.27 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 210797004 210797004 C A HHAT Silent p.I461I 0.31 TCGA-CA-6718-01 1 21231463 21231463 A G EIF4G3 Silent p.A505A 0.22 TCGA-CA-6718-01 1 212530307 212530307 G T PPP2R5A Nonsense_Mutation p.E332* 0.38 TCGA-CA-6718-01 1 212798351 212798351 G A FAM71A Silent p.P44P 0.39 TCGA-CA-6718-01 1 21324110 21324110 C T EIF4G3 Intron 0.14 TCGA-CA-6718-01 1 214498040 214498040 G A SMYD2 Silent p.A197A 0.29 TCGA-CA-6718-01 1 214551341 214551341 C A PTPN14 Missense_Mutation p.E883D 0.29 tolerated(0.54) benign(0) TCGA-CA-6718-01 1 214625255 214625255 C A PTPN14 Missense_Mutation p.E79D 0.22 tolerated(0.22) probably_damaging(0.997) TCGA-CA-6718-01 1 215342596 215342596 A G KCNK2 Missense_Mutation p.Y177C 0.37 deleterious(0) probably_damaging(0.975) TCGA-CA-6718-01 1 215747444 215747444 C T KCTD3 Nonsense_Mutation p.R56* 0.29 TCGA-CA-6718-01 1 215802171 215802171 G T USH2A Silent p.G5168G 0.26 TCGA-CA-6718-01 1 215822070 215822070 G A USH2A Silent p.G4794G 0.18 TCGA-CA-6718-01 1 216019260 216019260 T C USH2A Silent p.L2987L 0.28 TCGA-CA-6718-01 1 216251599 216251599 T G USH2A Missense_Mutation p.K1802Q 0.15 benign(0.063) TCGA-CA-6718-01 1 216370054 216370054 G T USH2A Missense_Mutation p.F1364L 0.35 benign(0.012) TCGA-CA-6718-01 1 21798068 21798068 T C NBPF3 Silent p.Y151Y 0.29 TCGA-CA-6718-01 1 21903017 21903017 C A ALPL Missense_Mutation p.L398M 0.19 deleterious(0.02) probably_damaging(0.945) TCGA-CA-6718-01 1 220356133 220356133 G T RAB3GAP2 Missense_Mutation p.F713L 0.28 deleterious(0) probably_damaging(0.954) TCGA-CA-6718-01 1 220366637 220366637 G A RAB3GAP2 Silent p.F405F 0.36 TCGA-CA-6718-01 1 221912393 221912393 C A DUSP10 Nonsense_Mutation p.E232* 0.26 TCGA-CA-6718-01 1 222716959 222716959 C A HHIPL2 Missense_Mutation p.K298N 0.29 tolerated(0.49) benign(0.094) TCGA-CA-6718-01 1 222757471 222757471 T C TAF1A Missense_Mutation p.E97G 0.47 deleterious(0) possibly_damaging(0.888) TCGA-CA-6718-01 1 222802489 222802489 G T MIA3 Nonsense_Mutation p.E643* 0.27 TCGA-CA-6718-01 1 222846724 222846724 T G AIDA Missense_Mutation p.K213Q 0.28 deleterious(0.02) benign(0.23) TCGA-CA-6718-01 1 222892617 222892617 C A BROX Missense_Mutation p.S74Y 0.22 deleterious(0.03) possibly_damaging(0.786) TCGA-CA-6718-01 1 223176819 223176819 G T DISP1 Missense_Mutation p.V694L 0.35 tolerated(1) benign(0.005) TCGA-CA-6718-01 1 223177421 223177421 C A DISP1 Silent p.I894I 0.22 TCGA-CA-6718-01 1 223441986 223441986 C A SUSD4 Missense_Mutation p.E131D 0.30 tolerated(0.56) benign(0.036) TCGA-CA-6718-01 1 225195128 225195128 G A DNAH14 Missense_Mutation p.R330Q 0.21 deleterious(0.03) probably_damaging(0.992) TCGA-CA-6718-01 1 225525880 225525880 T G DNAH14 Missense_Mutation p.F3384V 0.34 probably_damaging(0.99) TCGA-CA-6718-01 1 225528384 225528384 T G DNAH14 Missense_Mutation p.N2657K 0.29 tolerated(0.7) benign(0.21) TCGA-CA-6718-01 1 225552496 225552496 T G DNAH14 Missense_Mutation p.F3904C 0.31 benign(0.037) TCGA-CA-6718-01 1 227171485 227171485 G A ADCK3 Missense_Mutation p.D396N 0.33 deleterious(0.03) benign(0.108) TCGA-CA-6718-01 1 227842301 227842301 G T ZNF678 Missense_Mutation p.R117I 0.25 tolerated(0.37) benign(0.066) TCGA-CA-6718-01 1 227843057 227843057 G T ZNF678 Missense_Mutation p.R369I 0.22 tolerated(0.21) benign(0.175) TCGA-CA-6718-01 1 228109242 228109242 C A WNT9A Nonsense_Mutation p.E359* 0.25 TCGA-CA-6718-01 1 228346794 228346794 G A GJC2 3'UTR 0.29 TCGA-CA-6718-01 1 228461631 228461631 G T OBSCN Missense_Mutation p.E2141D 0.45 possibly_damaging(0.883) TCGA-CA-6718-01 1 230823878 230823878 C A COG2 Missense_Mutation p.S547Y 0.27 deleterious(0.01) benign(0.181) TCGA-CA-6718-01 1 230841903 230841903 G T AGT Missense_Mutation p.F300L 0.44 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 231488491 231488491 T G SPRTN Nonsense_Mutation p.L285* 0.29 TCGA-CA-6718-01 1 231556863 231556863 A G EGLN1 Missense_Mutation p.W258R 0.33 deleterious(0) probably_damaging(0.932) TCGA-CA-6718-01 1 232568046 232568046 C A SIPA1L2 Missense_Mutation p.K1401N 0.21 deleterious(0) probably_damaging(0.928) TCGA-CA-6718-01 1 232944103 232944103 G T MAP10 3'UTR 0.17 TCGA-CA-6718-01 1 233270786 233270786 G T PCNXL2 Missense_Mutation p.F1270L 0.23 tolerated(0.3) benign(0.074) TCGA-CA-6718-01 1 23419746 23419746 C A LUZP1 Missense_Mutation p.A337S 0.28 tolerated(0.96) benign(0.219) TCGA-CA-6718-01 1 234455843 234455843 G T SLC35F3 Splice_Site p.X383_splice 0.22 TCGA-CA-6718-01 1 235507586 235507586 T G GGPS1 3'UTR 0.31 TCGA-CA-6718-01 1 236368476 236368476 C A GPR137B Missense_Mutation p.F339L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6718-01 1 236647061 236647061 A G EDARADD 3'Flank 0.22 TCGA-CA-6718-01 1 236711492 236711492 A C LGALS8 3'UTR 0.22 TCGA-CA-6718-01 1 236923036 236923036 C A ACTN2 Missense_Mutation p.L772M 0.41 tolerated(0.4) benign(0.004) TCGA-CA-6718-01 1 237580371 237580371 G A RYR2 Missense_Mutation p.A266T 0.12 possibly_damaging(0.557) TCGA-CA-6718-01 1 237632416 237632416 A C RYR2 Missense_Mutation p.K546T 0.29 possibly_damaging(0.579) TCGA-CA-6718-01 1 237753203 237753203 G T RYR2 Nonsense_Mutation p.E1237* 0.19 TCGA-CA-6718-01 1 237870322 237870322 C T RYR2 Silent p.I3218I 0.28 TCGA-CA-6718-01 1 237872211 237872211 T G RYR2 Missense_Mutation p.F3319V 0.28 probably_damaging(0.969) TCGA-CA-6718-01 1 237947546 237947546 C T RYR2 Silent p.N4178N 0.19 TCGA-CA-6718-01 1 237972275 237972275 A C RYR2 Missense_Mutation p.K4791N 0.25 probably_damaging(0.937) TCGA-CA-6718-01 1 237982474 237982474 C A RYR2 Missense_Mutation p.L4858I 0.35 possibly_damaging(0.874) TCGA-CA-6718-01 1 238046122 238046122 G T ZP4 Missense_Mutation p.S472Y 0.25 tolerated(0.98) benign(0.042) TCGA-CA-6718-01 1 240072067 240072067 A C CHRM3 Missense_Mutation p.K439T 0.33 tolerated(0.55) benign(0.002) TCGA-CA-6718-01 1 240497413 240497413 C T FMN2 Missense_Mutation p.A1550V 0.24 probably_damaging(0.927) TCGA-CA-6718-01 1 241767567 241767567 G A OPN3 Nonsense_Mutation p.R230* 0.22 TCGA-CA-6718-01 1 241837978 241837978 G A WDR64 Missense_Mutation p.V138I 0.29 tolerated(0.17) benign(0.107) TCGA-CA-6718-01 1 242030149 242030149 T C EXO1 Silent p.S353S 0.25 TCGA-CA-6718-01 1 242271019 242271019 G T PLD5 Missense_Mutation p.S398Y 0.38 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 1 243332956 243332956 A C CEP170 Missense_Mutation p.F606C 0.20 tolerated(0.11) benign(0.264) TCGA-CA-6718-01 1 243708880 243708880 C A AKT3 Missense_Mutation p.D395Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 24392461 24392461 G T MYOM3 Missense_Mutation p.Q1152K 0.31 tolerated(1) benign(0.01) TCGA-CA-6718-01 1 244715890 244715890 C A C1orf101 Missense_Mutation p.S268Y 0.23 deleterious(0) benign(0.319) TCGA-CA-6718-01 1 246714600 246714600 A C TFB2M Missense_Mutation p.L237R 0.22 deleterious(0) probably_damaging(0.993) TCGA-CA-6718-01 1 246719921 246719921 A C TFB2M Missense_Mutation p.F220C 0.16 deleterious(0.02) possibly_damaging(0.814) TCGA-CA-6718-01 1 247263870 247263870 G A ZNF669 Missense_Mutation p.R401C 0.31 tolerated(0.21) probably_damaging(0.922) TCGA-CA-6718-01 1 247588527 247588527 G T NLRP3 Missense_Mutation p.K594N 0.30 deleterious(0.01) possibly_damaging(0.675) TCGA-CA-6718-01 1 247769362 247769362 C A OR2G3 Missense_Mutation p.H159N 0.32 deleterious(0.02) benign(0.348) TCGA-CA-6718-01 1 247921043 247921043 G T OR1C1 Missense_Mutation p.F222L 0.21 tolerated(0.38) benign(0.088) TCGA-CA-6718-01 1 248085192 248085192 G T OR2T8 Missense_Mutation p.K291N 0.23 deleterious(0) benign(0.038) TCGA-CA-6718-01 1 248201631 248201631 G T OR2L2 Missense_Mutation p.R21I 0.23 deleterious(0.03) benign(0.008) TCGA-CA-6718-01 1 248263333 248263333 G A OR2L13 Missense_Mutation p.R219Q 0.22 tolerated(0.3) benign(0.076) TCGA-CA-6718-01 1 248263452 248263452 C A OR2L13 Missense_Mutation p.L259I 0.30 deleterious(0.05) benign(0.25) TCGA-CA-6718-01 1 248402537 248402537 T G OR2M4 Missense_Mutation p.F103V 0.29 tolerated(0.1) benign(0.191) TCGA-CA-6718-01 1 248458847 248458847 G T OR2T12 Missense_Mutation p.L12I 0.22 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 248487231 248487231 T A OR2M7 Missense_Mutation p.I214F 0.25 deleterious(0) probably_damaging(0.915) TCGA-CA-6718-01 1 248525097 248525097 C A OR2T4 Missense_Mutation p.S72Y 0.19 deleterious(0.03) possibly_damaging(0.578) TCGA-CA-6718-01 1 248569319 248569319 A T OR2T1 Missense_Mutation p.L8F 0.12 tolerated_low_confidence(0.13) benign(0.095) TCGA-CA-6718-01 1 248570285 248570285 T G OR2T1 Missense_Mutation p.I330M 0.09 deleterious(0.05) probably_damaging(1) TCGA-CA-6718-01 1 248685047 248685047 T G OR2G6 Missense_Mutation p.F34V 0.28 tolerated(0.06) benign(0.015) TCGA-CA-6718-01 1 248722662 248722662 G T OR2T29 Missense_Mutation p.S44Y 0.14 deleterious(0.03) benign(0.379) TCGA-CA-6718-01 1 249148212 249148212 G T ZNF692 Missense_Mutation p.F364L 0.29 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 1 2520942 2520942 G T FAM213B 3'UTR 0.36 TCGA-CA-6718-01 1 2529673 2529673 G T MMEL1 Missense_Mutation p.F415L 0.43 deleterious(0) probably_damaging(0.94) TCGA-CA-6718-01 1 25549659 25549659 A C SYF2 3'UTR 0.33 TCGA-CA-6718-01 1 25737911 25737911 C A RHCE Intron 0.18 TCGA-CA-6718-01 1 25812135 25812135 G A TMEM57 Missense_Mutation p.D449N 0.40 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 1 26513727 26513727 G T CNKSR1 Missense_Mutation p.K459N 0.26 deleterious(0) probably_damaging(0.95) TCGA-CA-6718-01 1 26527332 26527332 G T CATSPER4 Missense_Mutation p.E333D 0.41 tolerated(0.36) benign(0.008) TCGA-CA-6718-01 1 26882078 26882078 T C RPS6KA1 Missense_Mutation p.L302S 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 28929939 28929939 T G TAF12 3'UTR 0.23 TCGA-CA-6718-01 1 29070323 29070323 G A YTHDF2 Missense_Mutation p.R514H 0.28 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 1 29602003 29602003 G A PTPRU Silent p.Q396Q 0.16 TCGA-CA-6718-01 1 29638208 29638208 G T PTPRU Missense_Mutation p.K1013N 0.26 deleterious(0) probably_damaging(0.94) TCGA-CA-6718-01 1 31762115 31762115 C T SNRNP40 Missense_Mutation p.D173N 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 31838632 31838632 C A FABP3 3'UTR 0.23 TCGA-CA-6718-01 1 31842348 31842348 C T FABP3 Missense_Mutation p.E44K 0.24 tolerated(0.07) benign(0.011) TCGA-CA-6718-01 1 32120409 32120409 G A COL16A1 Silent p.I1447I 0.31 TCGA-CA-6718-01 1 32657917 32657917 C T TXLNA Silent p.I323I 0.33 TCGA-CA-6718-01 1 33960644 33960644 G T ZSCAN20 Missense_Mutation p.E900D 0.30 deleterious(0.01) possibly_damaging(0.601) TCGA-CA-6718-01 1 34666590 34666590 G A C1orf94 Silent p.P409P 0.34 TCGA-CA-6718-01 1 3496399 3496399 G A MEGF6 Silent p.R157R 0.32 TCGA-CA-6718-01 1 35227059 35227059 C A GJB4 Missense_Mutation p.F68L 0.22 tolerated(0.07) benign(0.097) TCGA-CA-6718-01 1 35260041 35260041 G A GJA4 Missense_Mutation p.R76H 0.27 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 35370186 35370186 A C DLGAP3 Missense_Mutation p.L267V 0.22 deleterious(0) probably_damaging(0.952) TCGA-CA-6718-01 1 35478053 35478053 C A ZMYM6 Missense_Mutation p.V309F 0.27 deleterious(0.03) possibly_damaging(0.646) TCGA-CA-6718-01 1 35579796 35579796 C T ZMYM1 Nonsense_Mutation p.R789* 0.23 TCGA-CA-6718-01 1 35580410 35580410 A C ZMYM1 Missense_Mutation p.Q993H 0.19 deleterious(0.02) possibly_damaging(0.907) TCGA-CA-6718-01 1 36055621 36055621 T C TFAP2E Silent p.N292N 0.15 TCGA-CA-6718-01 1 3624244 3624244 C T TP73 Silent p.F106F 0.35 TCGA-CA-6718-01 1 3646683 3646683 C T TP73 Missense_Mutation p.S439L 0.33 deleterious(0.05) benign(0.158) TCGA-CA-6718-01 1 36553054 36553054 C T TEKT2 Silent p.I290I 0.32 TCGA-CA-6718-01 1 36563425 36563425 G A COL8A2 Silent p.V619V 0.27 TCGA-CA-6718-01 1 3677950 3677950 C A CCDC27 Missense_Mutation p.L273M 0.08 deleterious(0.01) probably_damaging(0.934) TCGA-CA-6718-01 1 36785677 36785677 G A SH3D21 Silent p.K471K 0.29 TCGA-CA-6718-01 1 36931760 36931760 G T CSF3R 3'UTR 0.28 TCGA-CA-6718-01 1 37346413 37346413 G T GRIK3 Silent p.I124I 0.19 TCGA-CA-6718-01 1 38006014 38006014 G T SNIP1 Missense_Mutation p.P224T 0.37 deleterious(0) probably_damaging(0.98) TCGA-CA-6718-01 1 38032481 38032481 C T GNL2 Missense_Mutation p.R724H 0.30 tolerated_low_confidence(0.48) unknown(0) TCGA-CA-6718-01 1 38485017 38485017 G T UTP11L Nonsense_Mutation p.E177* 0.36 TCGA-CA-6718-01 1 39341152 39341152 C A GJA9 Nonsense_Mutation p.E207* 0.24 TCGA-CA-6718-01 1 39494585 39494585 C A NDUFS5 Missense_Mutation p.F63L 0.33 tolerated(0.16) benign(0.01) TCGA-CA-6718-01 1 39987962 39987962 T C BMP8A Intron 0.29 TCGA-CA-6718-01 1 40309832 40309832 C A TRIT1 Missense_Mutation p.R392I 0.31 deleterious(0.01) possibly_damaging(0.851) TCGA-CA-6718-01 1 40777350 40777350 C T COL9A2 Missense_Mutation p.G152E 0.28 deleterious(0) unknown(0) TCGA-CA-6718-01 1 40960974 40960974 T A ZFP69 Missense_Mutation p.I275K 0.23 tolerated(0.29) possibly_damaging(0.575) TCGA-CA-6718-01 1 41303357 41303357 G A KCNQ4 Missense_Mutation p.R589Q 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-CA-6718-01 1 41461754 41461754 G T CTPS1 Intron 0.30 TCGA-CA-6718-01 1 43305964 43305964 T G ERMAP Missense_Mutation p.F237V 0.29 tolerated(0.41) benign(0.309) TCGA-CA-6718-01 1 43675551 43675551 C A WDR65 Missense_Mutation p.F631L 0.35 tolerated(0.09) benign(0.025) TCGA-CA-6718-01 1 44596280 44596280 G A KLF17 Missense_Mutation p.R341Q 0.42 deleterious(0) probably_damaging(0.975) TCGA-CA-6718-01 1 46085941 46085941 T C CCDC17 3'UTR 0.58 TCGA-CA-6718-01 1 46521594 46521594 C A PIK3R3 Missense_Mutation p.D272Y 0.23 deleterious(0) possibly_damaging(0.59) TCGA-CA-6718-01 1 46669180 46669180 C T LURAP1 Missense_Mutation p.L28F 0.44 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 46724371 46724371 G A RAD54L Missense_Mutation p.R75Q 0.24 tolerated(0.14) benign(0.085) TCGA-CA-6718-01 1 47152514 47152514 C A EFCAB14 Missense_Mutation p.R339I 0.28 tolerated(0.18) possibly_damaging(0.459) TCGA-CA-6718-01 1 47716915 47716915 G T STIL Missense_Mutation p.P1254T 0.26 tolerated(0.07) possibly_damaging(0.736) TCGA-CA-6718-01 1 4834566 4834566 G A AJAP1 3'UTR 0.34 TCGA-CA-6718-01 1 50574803 50574803 C A ELAVL4 Intron 0.41 TCGA-CA-6718-01 1 51753908 51753908 C T TTC39A Missense_Mutation p.R556Q 0.33 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 52954676 52954676 C T ZCCHC11 Missense_Mutation p.D474N 0.27 deleterious(0) possibly_damaging(0.844) TCGA-CA-6718-01 1 52981690 52981690 G T ZCCHC11 Missense_Mutation p.S252Y 0.30 deleterious(0.03) possibly_damaging(0.785) TCGA-CA-6718-01 1 54284671 54284671 T G NDC1 Missense_Mutation p.N226H 0.32 deleterious(0.02) probably_damaging(0.971) TCGA-CA-6718-01 1 54375643 54375643 C T DIO1 Missense_Mutation p.R241C 0.24 deleterious(0.03) benign(0.126) TCGA-CA-6718-01 1 54870306 54870306 C T SSBP3 Missense_Mutation p.R45Q 0.15 deleterious(0.02) benign(0.147) TCGA-CA-6718-01 1 56989543 56989543 G T PPAP2B Missense_Mutation p.F195L 0.35 deleterious(0) probably_damaging(0.951) TCGA-CA-6718-01 1 57002689 57002689 T C PPAP2B Missense_Mutation p.T79A 0.30 tolerated(0.37) benign(0.002) TCGA-CA-6718-01 1 57233561 57233561 G T C1orf168 Nonsense_Mutation p.S335* 0.26 TCGA-CA-6718-01 1 57254707 57254707 G A C1orf168 Silent p.P286P 0.27 TCGA-CA-6718-01 1 58999994 58999994 C A OMA1 Nonsense_Mutation p.E247* 0.28 TCGA-CA-6718-01 1 6158582 6158582 T G KCNAB2 Missense_Mutation p.I399S 0.18 deleterious(0) probably_damaging(0.952) TCGA-CA-6718-01 1 62293244 62293244 C A INADL Missense_Mutation p.P657T 0.29 tolerated(0.26) benign(0.009) TCGA-CA-6718-01 1 62739805 62739805 C A KANK4 Missense_Mutation p.G324V 0.34 tolerated(0.07) probably_damaging(0.979) TCGA-CA-6718-01 1 62905615 62905615 A C USP1 Missense_Mutation p.K26T 0.28 deleterious(0) possibly_damaging(0.848) TCGA-CA-6718-01 1 63790664 63790665 - A FOXD3 3'UTR 0.20 TCGA-CA-6718-01 1 63881556 63881556 G A ALG6 Silent p.T305T 0.29 TCGA-CA-6718-01 1 65016338 65016338 A G CACHD1 Missense_Mutation p.Q36R 0.24 tolerated(0.25) benign(0.008) TCGA-CA-6718-01 1 66067525 66067525 G T LEPR Splice_Site p.X429_splice 0.22 TCGA-CA-6718-01 1 66999984 66999984 C T SGIP1 5'UTR 0.33 TCGA-CA-6718-01 1 67155971 67155971 C A SGIP1 Silent p.S514S 0.28 TCGA-CA-6718-01 1 67340587 67340587 A T WDR78 Missense_Mutation p.I226N 0.08 tolerated(0.48) benign(0.004) TCGA-CA-6718-01 1 67561082 67561082 C T C1orf141 Missense_Mutation p.D147N 0.35 tolerated(0.07) probably_damaging(0.913) TCGA-CA-6718-01 1 67666529 67666529 G A IL23R Missense_Mutation p.A201T 0.26 tolerated(0.06) probably_damaging(0.913) TCGA-CA-6718-01 1 67861510 67861510 A G IL12RB2 Missense_Mutation p.D776G 0.18 tolerated(0.24) benign(0.001) TCGA-CA-6718-01 1 67895870 67895870 T C SERBP1 Silent p.K38K 0.31 TCGA-CA-6718-01 1 70504011 70504011 C T LRRC7 Missense_Mutation p.S797L 0.20 deleterious_low_confidence(0) benign(0.033) TCGA-CA-6718-01 1 70705149 70705149 C A SRSF11 Nonsense_Mutation p.S249* 0.29 TCGA-CA-6718-01 1 71530763 71530763 C A ZRANB2 Missense_Mutation p.K329N 0.22 deleterious_low_confidence(0) unknown(0) TCGA-CA-6718-01 1 74506913 74506913 C A LRRIQ3 Nonsense_Mutation p.E568* 0.18 TCGA-CA-6718-01 1 74506922 74506922 A C LRRIQ3 Missense_Mutation p.L565V 0.27 deleterious(0.03) benign(0.099) TCGA-CA-6718-01 1 74701141 74701141 A G TNNI3K Intron 0.30 TCGA-CA-6718-01 1 75072427 75072427 T G C1orf173 Missense_Mutation p.K449N 0.32 deleterious(0) possibly_damaging(0.474) TCGA-CA-6718-01 1 75097470 75097470 C A C1orf173 Missense_Mutation p.R249I 0.27 deleterious(0) probably_damaging(0.948) TCGA-CA-6718-01 1 75683570 75683570 G A SLC44A5 Silent p.Y535Y 0.22 TCGA-CA-6718-01 1 75693491 75693491 G T SLC44A5 Missense_Mutation p.S302Y 0.30 deleterious(0) probably_damaging(0.927) TCGA-CA-6718-01 1 76257984 76257984 C T RABGGTB Missense_Mutation p.P233L 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-CA-6718-01 1 76779647 76779647 G A ST6GALNAC3 Missense_Mutation p.R59Q 0.27 benign(0.013) TCGA-CA-6718-01 1 78408547 78408547 T G NEXN 3'UTR 0.30 TCGA-CA-6718-01 1 78414422 78414422 G T FUBP1 3'UTR 0.25 TCGA-CA-6718-01 1 78959107 78959107 C A PTGFR Missense_Mutation p.L227I 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6718-01 1 79107273 79107273 G T IFI44L Missense_Mutation p.D435Y 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 84335765 84335765 C A TTLL7 Missense_Mutation p.R848S 0.29 deleterious_low_confidence(0.02) benign(0.091) TCGA-CA-6718-01 1 84415557 84415557 T G TTLL7 Missense_Mutation p.Q90H 0.18 deleterious(0) possibly_damaging(0.542) TCGA-CA-6718-01 1 84864250 84864250 G T DNASE2B Translation_Start_Site p.M1? 0.19 tolerated_low_confidence(0.74) unknown(0) TCGA-CA-6718-01 1 85624699 85624699 A C SYDE2 Missense_Mutation p.L1107V 0.31 tolerated(0.18) benign(0.008) TCGA-CA-6718-01 1 85718155 85718155 G T C1orf52 3'UTR 0.21 TCGA-CA-6718-01 1 86171989 86171989 G A ZNHIT6 Nonsense_Mutation p.R258* 0.27 TCGA-CA-6718-01 1 86334488 86334488 G A COL24A1 Missense_Mutation p.L1057F 0.36 tolerated(0.05) benign(0.303) TCGA-CA-6718-01 1 86590674 86590674 T G COL24A1 Missense_Mutation p.K449Q 0.29 tolerated(0.33) benign(0.028) TCGA-CA-6718-01 1 86898204 86898204 T G CLCA2 Nonsense_Mutation p.L246* 0.31 TCGA-CA-6718-01 1 86919077 86919077 G T CLCA2 Missense_Mutation p.R727S 0.20 deleterious(0.02) benign(0.367) TCGA-CA-6718-01 1 86964389 86964389 C A CLCA1 Missense_Mutation p.L750I 0.40 tolerated(0.13) benign(0.024) TCGA-CA-6718-01 1 86965682 86965682 A C CLCA1 Missense_Mutation p.K900T 0.35 tolerated_low_confidence(0.13) possibly_damaging(0.717) TCGA-CA-6718-01 1 86965739 86965739 T G CLCA1 3'UTR 0.09 TCGA-CA-6718-01 1 89251812 89251812 C T PKN2 Silent p.L399L 0.19 TCGA-CA-6718-01 1 89427135 89427135 C A CCBL2 Nonsense_Mutation p.E199* 0.20 TCGA-CA-6718-01 1 89477616 89477616 C A GBP3 Missense_Mutation p.E321D 0.29 deleterious(0) probably_damaging(0.961) TCGA-CA-6718-01 1 89616080 89616080 G T GBP7 Missense_Mutation p.F268L 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 1 9027724 9027724 G T CA6 Missense_Mutation p.R193I 0.29 deleterious(0.03) benign(0.005) TCGA-CA-6718-01 1 90400781 90400781 C T LRRC8D Silent p.L718L 0.30 TCGA-CA-6718-01 1 91383692 91383692 C A ZNF644 Missense_Mutation p.K1236N 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6718-01 1 91403867 91403867 C A ZNF644 Missense_Mutation p.R1015I 0.29 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 1 91841285 91841285 C A HFM1 Splice_Site p.X466_splice 0.14 TCGA-CA-6718-01 1 91844691 91844691 C A HFM1 Nonsense_Mutation p.E363* 0.27 TCGA-CA-6718-01 1 91977351 91977351 C A CDC7 Missense_Mutation p.S148Y 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-CA-6718-01 1 92185457 92185457 G T TGFBR3 Missense_Mutation p.S469Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-CA-6718-01 1 92479877 92479877 G T BRDT 3'UTR 0.35 TCGA-CA-6718-01 1 92646872 92646872 C A KIAA1107 Missense_Mutation p.S773Y 0.37 tolerated(0.18) possibly_damaging(0.871) TCGA-CA-6718-01 1 93586113 93586113 A C MTF2 Missense_Mutation p.I269L 0.20 tolerated(0.26) benign(0.005) TCGA-CA-6718-01 1 93676474 93676474 C T CCDC18 Missense_Mutation p.S496L 0.22 deleterious(0.01) possibly_damaging(0.706) TCGA-CA-6718-01 1 94000299 94000299 T G FNBP1L Missense_Mutation p.F275C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 94342711 94342711 G T DNTTIP2 Missense_Mutation p.F260L 0.21 tolerated(0.68) benign(0.001) TCGA-CA-6718-01 1 94574256 94574256 G A ABCA4 Nonsense_Mutation p.R107* 0.32 TCGA-CA-6718-01 1 95530462 95530462 G T ALG14 Missense_Mutation p.S83Y 0.29 tolerated(0.07) benign(0.063) TCGA-CA-6718-01 1 99422170 99422170 A G LPPR5 Missense_Mutation p.F122S 0.17 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 1 99771407 99771407 G A LPPR4 Missense_Mutation p.R378Q 0.32 tolerated(0.33) benign(0.11) TCGA-CA-6718-01 20 1514899 1514899 G T SIRPD 3'UTR 0.27 TCGA-CA-6718-01 20 18165296 18165296 C A CSRP2BP Missense_Mutation p.L679I 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-CA-6718-01 20 18462299 18462299 A C POLR3F Missense_Mutation p.N240H 0.30 deleterious(0.02) probably_damaging(0.981) TCGA-CA-6718-01 20 20144800 20144800 G A C20orf26 Missense_Mutation p.R378H 0.35 tolerated(0.41) benign(0.016) TCGA-CA-6718-01 20 20177283 20177283 G T C20orf26 Nonsense_Mutation p.E554* 0.31 TCGA-CA-6718-01 20 23345158 23345158 C A GZF1 Missense_Mutation p.F46L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 20 23425438 23425438 A G CSTL1 Missense_Mutation p.M121V 0.23 tolerated(1) benign(0) TCGA-CA-6718-01 20 23728319 23728319 G A CST1 3'UTR 0.28 TCGA-CA-6718-01 20 23807208 23807208 G A CST2 Silent p.I30I 0.33 TCGA-CA-6718-01 20 29614290 29614290 G T FRG1B 5'UTR 0.20 TCGA-CA-6718-01 20 29845479 29845479 C A DEFB115 Missense_Mutation p.H5N 0.18 tolerated_low_confidence(0.51) benign(0.254) TCGA-CA-6718-01 20 2996518 2996518 C T PTPRA Silent p.F310F 0.40 TCGA-CA-6718-01 20 30584915 30584915 C T XKR7 Silent p.P465P 0.25 TCGA-CA-6718-01 20 31021610 31021610 G A ASXL1 Missense_Mutation p.E537K 0.20 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 20 31115668 31115668 C T C20orf112 Missense_Mutation p.A30T 0.30 deleterious(0) probably_damaging(0.993) TCGA-CA-6718-01 20 31577457 31577457 G T SUN5 Silent p.I194I 0.29 TCGA-CA-6718-01 20 31577490 31577490 C A SUN5 Missense_Mutation p.Q183H 0.29 tolerated(0.11) benign(0.016) TCGA-CA-6718-01 20 31626753 31626753 T C BPIFB6 Silent p.A295A 0.34 TCGA-CA-6718-01 20 33147160 33147160 G A MAP1LC3A Missense_Mutation p.E40K 0.39 deleterious(0.02) probably_damaging(0.978) TCGA-CA-6718-01 20 33328934 33328934 G T NCOA6 Missense_Mutation p.S1709Y 0.27 probably_damaging(0.972) TCGA-CA-6718-01 20 3355749 3355749 C A C20orf194 Nonsense_Mutation p.E145* 0.39 TCGA-CA-6718-01 20 33711699 33711699 G A EDEM2 Missense_Mutation p.R370W 0.31 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 20 34092625 34092625 C A CEP250 Missense_Mutation p.S2143Y 0.25 possibly_damaging(0.652) TCGA-CA-6718-01 20 35060360 35060360 C T DLGAP4 Silent p.F80F 0.22 TCGA-CA-6718-01 20 35288785 35288785 G A NDRG3 Silent p.V271V 0.34 TCGA-CA-6718-01 20 35423003 35423003 C A SOGA1 Splice_Site p.X1161_splice 0.18 TCGA-CA-6718-01 20 36634674 36634674 C T TTI1 Missense_Mutation p.E810K 0.37 tolerated(0.1) benign(0.125) TCGA-CA-6718-01 20 36642092 36642092 T C TTI1 Missense_Mutation p.S43G 0.36 tolerated(0.58) benign(0.005) TCGA-CA-6718-01 20 36868045 36868045 A C KIAA1755 Silent p.A544A 0.37 TCGA-CA-6718-01 20 3731517 3731517 C A HSPA12B Silent p.L456L 0.39 TCGA-CA-6718-01 20 37536745 37536745 T C PPP1R16B Missense_Mutation p.L368P 0.15 deleterious(0) benign(0.424) TCGA-CA-6718-01 20 3783576 3783576 T C CDC25B Missense_Mutation p.V405A 0.32 deleterious(0) possibly_damaging(0.9) TCGA-CA-6718-01 20 41306677 41306677 G A PTPRT Missense_Mutation p.R328C 0.24 tolerated(0.06) probably_damaging(0.994) TCGA-CA-6718-01 20 42088849 42088849 C T SRSF6 Silent p.S186S 0.26 TCGA-CA-6718-01 20 42320838 42320838 A C MYBL2 Missense_Mutation p.K181T 0.22 deleterious(0) probably_damaging(0.926) TCGA-CA-6718-01 20 44162979 44162979 A C WFDC6 3'UTR 0.29 TCGA-CA-6718-01 20 44676626 44676626 G T SLC12A5 Missense_Mutation p.E661D 0.37 deleterious(0) probably_damaging(0.938) TCGA-CA-6718-01 20 44682334 44682334 G A SLC12A5 Missense_Mutation p.E912K 0.20 deleterious(0.04) benign(0.323) TCGA-CA-6718-01 20 45221120 45221120 G A SLC13A3 Silent p.F281F 0.23 TCGA-CA-6718-01 20 47859172 47859172 G T DDX27 Nonsense_Mutation p.E751* 0.40 TCGA-CA-6718-01 20 47989692 47989692 A C KCNB1 Nonsense_Mutation p.L802* 0.27 TCGA-CA-6718-01 20 48713336 48713336 A G UBE2V1 Missense_Mutation p.F38S 0.18 deleterious(0) probably_damaging(0.915) TCGA-CA-6718-01 20 49211912 49211912 C A FAM65C Nonsense_Mutation p.E678* 0.20 TCGA-CA-6718-01 20 49221258 49221258 G T FAM65C Missense_Mutation p.S333Y 0.36 deleterious(0) probably_damaging(0.945) TCGA-CA-6718-01 20 49576721 49576721 G A MOCS3 Missense_Mutation p.A448T 0.38 deleterious(0.01) possibly_damaging(0.512) TCGA-CA-6718-01 20 52830939 52830939 A C PFDN4 Missense_Mutation p.K25T 0.28 tolerated(0.07) benign(0.05) TCGA-CA-6718-01 20 53205028 53205028 G A DOK5 Missense_Mutation p.E61K 0.24 tolerated(0.08) probably_damaging(0.949) TCGA-CA-6718-01 20 55027360 55027360 C T CASS4 Silent p.S376S 0.46 TCGA-CA-6718-01 20 55111330 55111330 G A FAM209B Missense_Mutation p.E118K 0.26 tolerated(0.16) benign(0.122) TCGA-CA-6718-01 20 5528371 5528371 G A GPCPD1 Missense_Mutation p.S652F 0.33 deleterious(0.03) benign(0.001) TCGA-CA-6718-01 20 5564994 5564994 T G GPCPD1 Intron 0.36 TCGA-CA-6718-01 20 56089711 56089711 C T CTCFL Missense_Mutation p.E423K 0.28 deleterious(0.04) benign(0.234) TCGA-CA-6718-01 20 56807911 56807911 G T ANKRD60 5'Flank 0.21 TCGA-CA-6718-01 20 57478739 57478739 G A GNAS Missense_Mutation p.A752T 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 20 57829186 57829186 C A ZNF831 Silent p.S1474S 0.39 TCGA-CA-6718-01 20 58443596 58443596 C A SYCP2 Missense_Mutation p.R1287I 0.38 deleterious(0) probably_damaging(0.931) TCGA-CA-6718-01 20 58519069 58519069 C T FAM217B Missense_Mutation p.S24F 0.31 tolerated(0.05) benign(0.085) TCGA-CA-6718-01 20 58522269 58522269 A C FAM217B 3'UTR 0.19 TCGA-CA-6718-01 20 58571614 58571614 A G CDH26 Intron 0.34 TCGA-CA-6718-01 20 60294440 60294440 C T RP11-429E11.3 Intron 0.30 TCGA-CA-6718-01 20 61299849 61299849 G A SLCO4A1 Missense_Mutation p.R611K 0.15 tolerated(0.12) benign(0.116) TCGA-CA-6718-01 20 61476895 61476895 G T TCFL5 Intron 0.42 TCGA-CA-6718-01 20 61945151 61945151 A G COL20A1 Missense_Mutation p.S756G 0.11 deleterious(0) probably_damaging(0.976) TCGA-CA-6718-01 20 62705329 62705329 G A RGS19 Silent p.F177F 0.29 TCGA-CA-6718-01 20 62891427 62891427 G A PCMTD2 Missense_Mutation p.D37N 0.23 deleterious(0) probably_damaging(0.988) TCGA-CA-6718-01 20 9438095 9438095 G T PLCB4 Nonsense_Mutation p.E999* 0.20 TCGA-CA-6718-01 21 10914393 10914393 G T TPTE Silent p.V442V 0.07 TCGA-CA-6718-01 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.08 deleterious(0.03) possibly_damaging(0.883) TCGA-CA-6718-01 21 10944778 10944778 C A TPTE Missense_Mutation p.Q152H 0.09 tolerated(0.23) benign(0.006) TCGA-CA-6718-01 21 10952925 10952925 G T TPTE Missense_Mutation p.S91Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 21 15561365 15561365 T G LIPI Missense_Mutation p.K162T 0.44 tolerated(0.09) benign(0.236) TCGA-CA-6718-01 21 15561446 15561446 C T LIPI Missense_Mutation p.S135N 0.11 tolerated(1) benign(0.001) TCGA-CA-6718-01 21 16339672 16339672 C T NRIP1 Missense_Mutation p.R281Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 21 19635157 19635157 C T CHODL Silent p.L228L 0.22 TCGA-CA-6718-01 21 19638377 19638377 G T CHODL 3'UTR 0.16 TCGA-CA-6718-01 21 19642233 19642233 C A TMPRSS15 3'UTR 0.38 TCGA-CA-6718-01 21 19666922 19666922 T G TMPRSS15 Missense_Mutation p.K770T 0.24 deleterious(0.02) possibly_damaging(0.489) TCGA-CA-6718-01 21 22790794 22790794 T C NCAM2 Missense_Mutation p.I462T 0.20 tolerated(0.07) possibly_damaging(0.777) TCGA-CA-6718-01 21 27253942 27253942 G A APP 3'UTR 0.25 TCGA-CA-6718-01 21 27840801 27840801 T C CYYR1 3'UTR 0.29 TCGA-CA-6718-01 21 30250529 30250529 T G N6AMT1 Missense_Mutation p.K175Q 0.28 benign(0.043) TCGA-CA-6718-01 21 30331798 30331798 C A LTN1 Nonsense_Mutation p.E905* 0.33 TCGA-CA-6718-01 21 30338994 30338994 C A LTN1 Nonsense_Mutation p.E653* 0.10 TCGA-CA-6718-01 21 31709701 31709701 C T KRTAP27-1 Missense_Mutation p.E96K 0.27 deleterious(0.04) possibly_damaging(0.747) TCGA-CA-6718-01 21 31965301 31965301 C A KRTAP6-3 3'UTR 0.18 TCGA-CA-6718-01 21 32015367 32015367 T C KRTAP20-3 3'UTR 0.25 TCGA-CA-6718-01 21 33686879 33686879 C A MRAP 3'Flank 0.32 TCGA-CA-6718-01 21 33756739 33756739 A C URB1 Nonsense_Mutation p.L106* 0.17 TCGA-CA-6718-01 21 34030180 34030180 A C SYNJ1 Silent p.V808V 0.24 TCGA-CA-6718-01 21 34072157 34072157 C A SYNJ1 Missense_Mutation p.R196I 0.16 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 21 34121005 34121005 T G PAXBP1 Silent p.R576R 0.18 TCGA-CA-6718-01 21 34805069 34805069 C T IFNGR2 Missense_Mutation p.S257L 0.15 tolerated(0.84) benign(0.001) TCGA-CA-6718-01 21 35469194 35469194 A C SLC5A3 Missense_Mutation p.Q566P 0.31 tolerated(0.36) benign(0.001) TCGA-CA-6718-01 21 35469523 35469523 G T SLC5A3 Missense_Mutation p.D676Y 0.21 deleterious(0.04) benign(0.071) TCGA-CA-6718-01 21 35474133 35474133 A C SLC5A3 3'UTR 0.23 TCGA-CA-6718-01 21 38117492 38117492 G A SIM2 Intron 0.44 TCGA-CA-6718-01 21 38524222 38524222 A C TTC3 Missense_Mutation p.K769T 0.23 deleterious(0) probably_damaging(0.974) TCGA-CA-6718-01 21 38524296 38524296 G T TTC3 Nonsense_Mutation p.E794* 0.22 TCGA-CA-6718-01 21 38538307 38538307 A G TTC3 Missense_Mutation p.Q1264R 0.27 tolerated(0.49) benign(0.048) TCGA-CA-6718-01 21 38852962 38852962 G A DYRK1A Missense_Mutation p.R117Q 0.14 deleterious(0.01) possibly_damaging(0.475) TCGA-CA-6718-01 21 39775575 39775575 C A ERG Nonsense_Mutation p.E156* 0.32 TCGA-CA-6718-01 21 40181979 40181979 G T ETS2 Missense_Mutation p.K7N 0.08 deleterious_low_confidence(0) benign(0.384) TCGA-CA-6718-01 21 40781916 40781916 C A LCA5L Missense_Mutation p.R424I 0.28 deleterious(0.02) possibly_damaging(0.774) TCGA-CA-6718-01 21 41033797 41033797 C T B3GALT5 3'UTR 0.16 TCGA-CA-6718-01 21 42818062 42818062 C A MX1 Missense_Mutation p.Q423K 0.29 tolerated(0.85) benign(0.002) TCGA-CA-6718-01 21 43536042 43536042 C T UMODL1 Missense_Mutation p.R936C 0.24 tolerated(0.22) possibly_damaging(0.835) TCGA-CA-6718-01 21 44182202 44182202 C A PDE9A Silent p.I365I 0.24 TCGA-CA-6718-01 21 44485311 44485311 A G CBS Splice_Site p.X246_splice 0.12 TCGA-CA-6718-01 21 45152434 45152434 A C PDXK Intron 0.23 TCGA-CA-6718-01 21 45507669 45507669 G A TRAPPC10 Missense_Mutation p.E877K 0.23 tolerated(0.19) benign(0.283) TCGA-CA-6718-01 21 45523230 45523230 G A TRAPPC10 Missense_Mutation p.D1200N 0.22 deleterious(0.01) possibly_damaging(0.9) TCGA-CA-6718-01 21 46011588 46011588 A C KRTAP10-6 Missense_Mutation p.C260G 0.26 deleterious(0.02) unknown(0) TCGA-CA-6718-01 21 46925113 46925113 C T COL18A1 Silent p.I1158I 0.28 TCGA-CA-6718-01 21 47423610 47423610 A G COL6A1 Missense_Mutation p.T924A 0.25 tolerated(0.1) possibly_damaging(0.801) TCGA-CA-6718-01 21 47558832 47558832 T C FTCD Silent p.A422A 0.19 TCGA-CA-6718-01 21 47660823 47660823 A G MCM3AP Silent p.I1845I 0.08 TCGA-CA-6718-01 21 47768945 47768945 A C PCNT Missense_Mutation p.E351A 0.26 benign(0.006) TCGA-CA-6718-01 21 47929258 47929258 C A DIP2A Missense_Mutation p.F291L 0.22 deleterious(0.02) possibly_damaging(0.766) TCGA-CA-6718-01 21 48080782 48080782 T C PRMT2 Missense_Mutation p.Y290H 0.24 tolerated(0.34) benign(0.016) TCGA-CA-6718-01 22 17956165 17956165 C A CECR2 5'Flank 0.26 TCGA-CA-6718-01 22 18003210 18003210 C A CECR2 Missense_Mutation p.L300I 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6718-01 22 19379725 19379725 T G HIRA Missense_Mutation p.K279Q 0.29 tolerated(0.06) possibly_damaging(0.505) TCGA-CA-6718-01 22 21044674 21044674 G A POM121L4P RNA 0.33 TCGA-CA-6718-01 22 21337318 21337318 G A LZTR1 Missense_Mutation p.R68H 0.27 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 22 22143039 22143039 G T MAPK1 Missense_Mutation p.S223Y 0.12 deleterious(0.02) probably_damaging(0.944) TCGA-CA-6718-01 22 22712374 22712374 C A IGLV1-47 Silent p.I39I 0.27 TCGA-CA-6718-01 22 23101595 23101595 C A IGLV2-14 Missense_Mutation p.F83L 0.30 deleterious_low_confidence(0.02) benign(0.433) TCGA-CA-6718-01 22 23165678 23165678 C A IGLV2-8 Missense_Mutation p.F83L 0.26 deleterious_low_confidence(0.02) benign(0.433) TCGA-CA-6718-01 22 24452676 24452676 A C CABIN1 Missense_Mutation p.K372T 0.27 tolerated(0.07) probably_damaging(0.996) TCGA-CA-6718-01 22 24967998 24967998 C A SNRPD3 3'UTR 0.30 TCGA-CA-6718-01 22 25145447 25145447 C A PIWIL3 Nonsense_Mutation p.E420* 0.31 TCGA-CA-6718-01 22 25150089 25150089 C T PIWIL3 Missense_Mutation p.R290Q 0.27 deleterious(0) benign(0.188) TCGA-CA-6718-01 22 25294420 25294420 C T SGSM1 Missense_Mutation p.S890L 0.29 deleterious(0.03) benign(0.069) TCGA-CA-6718-01 22 25771840 25771840 G T LRP5L 5'UTR 0.28 TCGA-CA-6718-01 22 26773642 26773642 T C SEZ6L Silent p.C982C 0.17 TCGA-CA-6718-01 22 29121098 29121098 T G CHEK2 Missense_Mutation p.K196N 0.31 tolerated(0.24) benign(0.061) TCGA-CA-6718-01 22 29886008 29886008 C A NEFH Silent p.V793V 0.28 TCGA-CA-6718-01 22 29913030 29913030 C T THOC5 Missense_Mutation p.E557K 0.32 tolerated(0.05) possibly_damaging(0.651) TCGA-CA-6718-01 22 31534698 31534698 C T PLA2G3 Missense_Mutation p.R201Q 0.20 deleterious(0.04) possibly_damaging(0.627) TCGA-CA-6718-01 22 31979897 31979897 A C SFI1 Missense_Mutation p.I429L 0.14 tolerated(0.83) benign(0.013) TCGA-CA-6718-01 22 32109581 32109581 G A PRR14L Missense_Mutation p.S1415L 0.29 tolerated(1) benign(0.001) TCGA-CA-6718-01 22 32110097 32110097 G A PRR14L Missense_Mutation p.S1243F 0.27 deleterious(0) benign(0.022) TCGA-CA-6718-01 22 32112369 32112369 T G PRR14L Missense_Mutation p.N486H 0.19 tolerated(0.16) possibly_damaging(0.461) TCGA-CA-6718-01 22 32756052 32756052 G A RFPL3S 3'UTR 0.36 TCGA-CA-6718-01 22 32828360 32828360 G A BPIFC Silent p.F383F 0.25 TCGA-CA-6718-01 22 36983512 36983512 G A CACNG2 Missense_Mutation p.R99W 0.31 deleterious(0) possibly_damaging(0.571) TCGA-CA-6718-01 22 38130856 38130856 G T TRIOBP Nonsense_Mutation p.E1505* 0.29 TCGA-CA-6718-01 22 38474623 38474623 G A SLC16A8 Silent p.V429V 0.34 TCGA-CA-6718-01 22 38915993 38915993 G A DMC1 3'UTR 0.40 TCGA-CA-6718-01 22 39712807 39712807 C A RPL3 Missense_Mutation p.K135N 0.41 deleterious(0.03) benign(0.279) TCGA-CA-6718-01 22 40139872 40139872 T G ENTHD1 Missense_Mutation p.N546H 0.36 deleterious(0.05) benign(0.016) TCGA-CA-6718-01 22 40283504 40283504 C A ENTHD1 Missense_Mutation p.K83N 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 22 40706963 40706963 C T TNRC6B Silent p.I1467I 0.32 TCGA-CA-6718-01 22 41320486 41320486 G A XPNPEP3 Missense_Mutation p.G453S 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 22 41525914 41525914 C T EP300 Nonsense_Mutation p.R397* 0.26 TCGA-CA-6718-01 22 41632585 41632585 G A CHADL Missense_Mutation p.R656W 0.45 deleterious(0) possibly_damaging(0.67) TCGA-CA-6718-01 22 41974862 41974862 G A PMM1 Silent p.F166F 0.23 TCGA-CA-6718-01 22 42293062 42293062 C T SREBF2 Silent p.F834F 0.30 TCGA-CA-6718-01 22 43287079 43287079 G A PACSIN2 Silent p.F109F 0.33 TCGA-CA-6718-01 22 44027992 44027992 G T EFCAB6 Nonsense_Mutation p.S742* 0.32 TCGA-CA-6718-01 22 44592036 44592036 G T PARVG Missense_Mutation p.K195N 0.17 tolerated(0.15) benign(0.093) TCGA-CA-6718-01 22 45802649 45802649 A C SMC1B Missense_Mutation p.N132K 0.27 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 22 46654092 46654092 A G PKDREJ Missense_Mutation p.F1710L 0.32 tolerated(0.05) benign(0.163) TCGA-CA-6718-01 22 46658330 46658330 G A PKDREJ Missense_Mutation p.S297L 0.24 deleterious(0.02) possibly_damaging(0.557) TCGA-CA-6718-01 22 46930217 46930217 G A CELSR1 Missense_Mutation p.R951C 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 22 47287264 47287264 G A TBC1D22A Missense_Mutation p.E271K 0.22 deleterious(0) possibly_damaging(0.705) TCGA-CA-6718-01 22 51115089 51115089 G A SHANK3 Missense_Mutation p.D103N 0.29 probably_damaging(0.998) TCGA-CA-6718-01 22 51208341 51208341 T G RABL2B Missense_Mutation p.K134T 0.30 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 2 100911960 100911960 C T LONRF2 Missense_Mutation p.R511Q 0.45 tolerated(0.08) benign(0.007) TCGA-CA-6718-01 2 101014433 101014433 G T CHST10 Missense_Mutation p.L122I 0.16 tolerated(0.78) possibly_damaging(0.888) TCGA-CA-6718-01 2 10206045 10206045 G A CYS1 Silent p.S119S 0.38 TCGA-CA-6718-01 2 102490663 102490663 C T MAP4K4 Missense_Mutation p.R919C 0.38 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6718-01 2 102954782 102954782 T G IL1RL1 Missense_Mutation p.F20V 0.29 tolerated(0.54) benign(0.016) TCGA-CA-6718-01 2 107029602 107029602 A C RGPD3 Missense_Mutation p.V1735G 0.23 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-CA-6718-01 2 107050766 107050766 C T RGPD3 Missense_Mutation p.C708Y 0.18 tolerated(0.16) possibly_damaging(0.728) TCGA-CA-6718-01 2 107449072 107449072 G A ST6GAL2 Silent p.D364D 0.25 TCGA-CA-6718-01 2 107460209 107460209 G A ST6GAL2 Silent p.D75D 0.67 TCGA-CA-6718-01 2 108487736 108487736 C A RGPD4 Silent p.V1092V 0.08 TCGA-CA-6718-01 2 108507285 108507285 C A RGPD4 3'UTR 0.07 TCGA-CA-6718-01 2 108872136 108872136 A C SULT1C3 Missense_Mutation p.K170Q 0.23 deleterious(0.02) benign(0.023) TCGA-CA-6718-01 2 109003787 109003787 G T SULT1C4 Missense_Mutation p.D270Y 0.59 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 109088309 109088309 C A GCC2 Missense_Mutation p.L842I 0.19 deleterious(0.02) benign(0.023) TCGA-CA-6718-01 2 109381730 109381730 C A RANBP2 Missense_Mutation p.P1579T 0.42 tolerated(0.16) benign(0.025) TCGA-CA-6718-01 2 109964357 109964357 C T SH3RF3 Silent p.F267F 0.14 TCGA-CA-6718-01 2 110902131 110902131 G T NPHP1 Missense_Mutation p.F512L 0.39 tolerated(0.73) benign(0.036) TCGA-CA-6718-01 2 110919249 110919249 G T NPHP1 Missense_Mutation p.F351L 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6718-01 2 111431724 111431724 T G BUB1 Missense_Mutation p.E55A 0.17 tolerated(0.74) possibly_damaging(0.658) TCGA-CA-6718-01 2 111525989 111525989 G T ACOXL Missense_Mutation p.R8I 0.55 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CA-6718-01 2 111542323 111542323 G A ACOXL Silent p.K30K 0.26 TCGA-CA-6718-01 2 112541947 112541947 C A ANAPC1 Nonsense_Mutation p.E1650* 0.09 TCGA-CA-6718-01 2 112622526 112622526 G T ANAPC1 Missense_Mutation p.L230I 0.16 tolerated(0.14) benign(0.009) TCGA-CA-6718-01 2 113180153 113180153 T C RGPD8 Missense_Mutation p.N75S 0.29 deleterious(0.02) possibly_damaging(0.748) TCGA-CA-6718-01 2 11332750 11332750 T A ROCK2 Missense_Mutation p.K1259M 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 2 11337663 11337663 C A ROCK2 Nonsense_Mutation p.E1090* 0.43 TCGA-CA-6718-01 2 113483834 113483834 G A NT5DC4 Silent p.K359K 0.17 TCGA-CA-6718-01 2 113514380 113514380 C T CKAP2L Missense_Mutation p.D190N 0.13 tolerated(0.07) benign(0.001) TCGA-CA-6718-01 2 114476797 114476797 C T SLC35F5 Nonsense_Mutation p.W477* 0.20 TCGA-CA-6718-01 2 116548905 116548905 G A DPP10 Missense_Mutation p.R562Q 0.20 tolerated(0.1) benign(0.065) TCGA-CA-6718-01 2 116593827 116593827 T C DPP10 Missense_Mutation p.L686S 0.15 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 2 11731732 11731732 G A GREB1 Intron 0.50 TCGA-CA-6718-01 2 118588185 118588185 A C DDX18 Missense_Mutation p.K633T 0.46 tolerated(0.08) benign(0.126) TCGA-CA-6718-01 2 118588272 118588272 C A DDX18 Nonsense_Mutation p.S662* 0.21 TCGA-CA-6718-01 2 120129876 120129876 G T DBI Missense_Mutation p.K143N 0.45 tolerated(0.12) possibly_damaging(0.838) TCGA-CA-6718-01 2 120385244 120385244 A C PCDP1 Missense_Mutation p.K511T 0.39 tolerated(0.15) benign(0.015) TCGA-CA-6718-01 2 120849205 120849205 A C EPB41L5 Missense_Mutation p.K373T 0.12 deleterious(0) probably_damaging(0.936) TCGA-CA-6718-01 2 121747955 121747955 C T GLI2 Missense_Mutation p.P1489S 0.25 tolerated(0.45) probably_damaging(0.996) TCGA-CA-6718-01 2 122485280 122485280 G T NIFK 3'UTR 0.37 TCGA-CA-6718-01 2 125530547 125530547 C T CNTNAP5 Missense_Mutation p.S901L 0.19 deleterious(0) benign(0.041) TCGA-CA-6718-01 2 128460072 128460072 G T WDR33 3'UTR 0.35 TCGA-CA-6718-01 2 128520713 128520713 T G WDR33 Missense_Mutation p.K216T 0.42 deleterious(0) unknown(0) TCGA-CA-6718-01 2 128627099 128627099 C T AMMECR1L Missense_Mutation p.R218Q 0.52 tolerated(0.1) benign(0.141) TCGA-CA-6718-01 2 128631623 128631623 C A AMMECR1L Missense_Mutation p.E62D 0.28 tolerated(0.27) benign(0.01) TCGA-CA-6718-01 2 128707503 128707503 G A SAP130 Missense_Mutation p.R939W 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6718-01 2 128930226 128930226 T G UGGT1 Missense_Mutation p.L1062V 0.20 tolerated(0.28) possibly_damaging(0.908) TCGA-CA-6718-01 2 130739832 130739832 T G RAB6C 3'UTR 0.22 TCGA-CA-6718-01 2 130865653 130865653 C A POTEF Splice_Site p.X352_splice 0.31 TCGA-CA-6718-01 2 130872467 130872467 T C POTEF Missense_Mutation p.E266G 0.19 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-CA-6718-01 2 130872860 130872860 A G POTEF Missense_Mutation p.V188A 0.06 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-CA-6718-01 2 1312322 1312322 C T SNTG2 Silent p.F447F 0.25 TCGA-CA-6718-01 2 131523123 131523123 T G AMER3 3'UTR 0.27 TCGA-CA-6718-01 2 131524631 131524631 C T AMER3 3'UTR 0.29 TCGA-CA-6718-01 2 131672953 131672953 C T ARHGEF4 5'Flank 0.22 TCGA-CA-6718-01 2 132905695 132905695 C A ANKRD30BL 3'UTR 0.41 TCGA-CA-6718-01 2 133541895 133541895 A C NCKAP5 Missense_Mutation p.L830R 0.27 tolerated(0.11) possibly_damaging(0.576) TCGA-CA-6718-01 2 135616903 135616903 C T ACMSD Missense_Mutation p.R59C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 2 135659481 135659481 C A ACMSD 3'UTR 0.07 TCGA-CA-6718-01 2 135740882 135740882 C A MAP3K19 Intron 0.20 TCGA-CA-6718-01 2 135743428 135743428 C A MAP3K19 Missense_Mutation p.R1005I 0.28 deleterious(0.01) benign(0.037) TCGA-CA-6718-01 2 135810027 135810027 G A RAB3GAP1 Missense_Mutation p.D16N 0.16 deleterious(0) probably_damaging(0.961) TCGA-CA-6718-01 2 135920378 135920378 G A RAB3GAP1 Missense_Mutation p.S816N 0.09 tolerated(0.08) benign(0.029) TCGA-CA-6718-01 2 136566182 136566182 C A LCT Missense_Mutation p.M1245I 0.27 tolerated(0.4) benign(0.001) TCGA-CA-6718-01 2 136575352 136575352 G A LCT Silent p.G422G 0.26 TCGA-CA-6718-01 2 136594287 136594287 G A LCT Silent p.F151F 0.44 TCGA-CA-6718-01 2 136873030 136873030 G T CXCR4 Silent p.V160V 0.41 TCGA-CA-6718-01 2 141108388 141108389 - T LRP1B Frame_Shift_Ins p.R3957Kfs*11 0.15 TCGA-CA-6718-01 2 141245224 141245224 G A LRP1B Missense_Mutation p.R3069C 0.20 possibly_damaging(0.898) TCGA-CA-6718-01 2 141356257 141356257 G T LRP1B Missense_Mutation p.F2379L 0.20 benign(0.153) TCGA-CA-6718-01 2 141609244 141609244 G T LRP1B Missense_Mutation p.S1563Y 0.39 benign(0.029) TCGA-CA-6718-01 2 141819840 141819840 T G LRP1B Missense_Mutation p.K339T 0.16 benign(0.403) TCGA-CA-6718-01 2 143676276 143676276 G A KYNU Missense_Mutation p.E90K 0.19 deleterious(0.04) probably_damaging(0.985) TCGA-CA-6718-01 2 145157339 145157339 G T ZEB2 Missense_Mutation p.S472Y 0.24 tolerated(0.13) possibly_damaging(0.883) TCGA-CA-6718-01 2 1481023 1481023 G A TPO Missense_Mutation p.V329M 0.44 deleterious(0) probably_damaging(0.993) TCGA-CA-6718-01 2 148657097 148657097 G T ACVR2A Nonsense_Mutation p.E112* 0.42 TCGA-CA-6718-01 2 149818567 149818567 G T KIF5C Nonsense_Mutation p.E351* 0.19 TCGA-CA-6718-01 2 152138530 152138530 T G NMI Missense_Mutation p.N37H 0.20 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 2 152267799 152267799 G T RIF1 Nonsense_Mutation p.E44* 0.34 TCGA-CA-6718-01 2 152320993 152320993 A T RIF1 Missense_Mutation p.K1653N 0.11 tolerated(0.1) benign(0.012) TCGA-CA-6718-01 2 152331504 152331504 G T RIF1 Missense_Mutation p.E2446D 0.35 deleterious(0.03) possibly_damaging(0.885) TCGA-CA-6718-01 2 152381129 152381129 A G NEB Missense_Mutation p.V7425A 0.45 possibly_damaging(0.744) TCGA-CA-6718-01 2 152435968 152435968 C A NEB Nonsense_Mutation p.E5530* 0.20 TCGA-CA-6718-01 2 152521949 152521949 A C NEB Missense_Mutation p.S1712R 0.18 benign(0.358) TCGA-CA-6718-01 2 152527669 152527669 C A NEB Missense_Mutation p.E1458D 0.18 probably_damaging(0.996) TCGA-CA-6718-01 2 152534587 152534587 G A NEB Missense_Mutation p.R1124W 0.11 benign(0.059) TCGA-CA-6718-01 2 152579948 152579948 T G NEB Missense_Mutation p.N222T 0.17 benign(0.057) TCGA-CA-6718-01 2 152584406 152584406 A C NEB Missense_Mutation p.I31M 0.15 benign(0.263) TCGA-CA-6718-01 2 155099271 155099271 T G GALNT13 Missense_Mutation p.I180S 0.16 deleterious(0) benign(0.157) TCGA-CA-6718-01 2 158114793 158114793 T G GALNT5 Missense_Mutation p.F67V 0.41 tolerated(0.2) benign(0.009) TCGA-CA-6718-01 2 158114808 158114808 A C GALNT5 Missense_Mutation p.K72Q 0.20 tolerated(0.1) benign(0.157) TCGA-CA-6718-01 2 158115364 158115364 A C GALNT5 Missense_Mutation p.K257T 0.24 deleterious(0.04) benign(0.056) TCGA-CA-6718-01 2 158181940 158181940 G T ERMN Nonsense_Mutation p.S85* 0.14 TCGA-CA-6718-01 2 159537101 159537101 C T PKP4 Missense_Mutation p.S1164L 0.33 deleterious(0) benign(0.368) TCGA-CA-6718-01 2 160205345 160205345 C A BAZ2B Splice_Site p.X1713_splice 0.36 TCGA-CA-6718-01 2 160205776 160205776 A C BAZ2B Missense_Mutation p.S1627A 0.44 benign(0.013) TCGA-CA-6718-01 2 160257129 160257129 C T BAZ2B Missense_Mutation p.R960Q 0.38 benign(0.362) TCGA-CA-6718-01 2 160840521 160840521 C A PLA2R1 Nonsense_Mutation p.E701* 0.18 TCGA-CA-6718-01 2 161030526 161030526 C T ITGB6 Missense_Mutation p.E240K 0.38 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 161056658 161056658 C A ITGB6 5'UTR 0.42 TCGA-CA-6718-01 2 163693278 163693278 C A KCNH7 Splice_Site p.X26_splice 0.42 TCGA-CA-6718-01 2 1653217 1653217 G A PXDN Missense_Mutation p.R779W 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6718-01 2 166170442 166170442 A C SCN2A Missense_Mutation p.I403L 0.10 tolerated(0.19) probably_damaging(0.992) TCGA-CA-6718-01 2 166246199 166246199 G T SCN2A Missense_Mutation p.E1961D 0.10 tolerated(0.71) probably_damaging(0.997) TCGA-CA-6718-01 2 167297914 167297914 T G SCN7A Missense_Mutation p.N717H 0.10 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 2 168099884 168099884 G T XIRP2 Missense_Mutation p.R661M 0.44 possibly_damaging(0.847) TCGA-CA-6718-01 2 168101750 168101750 C A XIRP2 Missense_Mutation p.S1283Y 0.09 probably_damaging(1) TCGA-CA-6718-01 2 168102174 168102174 C A XIRP2 Missense_Mutation p.F1424L 0.43 benign(0.012) TCGA-CA-6718-01 2 168725564 168725564 C A B3GALT1 Silent p.V5V 0.51 TCGA-CA-6718-01 2 170063065 170063065 A C LRP2 Missense_Mutation p.F2389V 0.09 benign(0.048) TCGA-CA-6718-01 2 170068687 170068687 T C LRP2 Missense_Mutation p.N2024S 0.08 benign(0.027) TCGA-CA-6718-01 2 170096074 170096074 G T LRP2 Nonsense_Mutation p.Y1419* 0.45 TCGA-CA-6718-01 2 170113668 170113668 G T LRP2 Missense_Mutation p.L869I 0.09 possibly_damaging(0.558) TCGA-CA-6718-01 2 170115559 170115559 G A LRP2 Missense_Mutation p.S830L 0.52 benign(0.356) TCGA-CA-6718-01 2 170134367 170134367 T C LRP2 Missense_Mutation p.T554A 0.20 possibly_damaging(0.641) TCGA-CA-6718-01 2 170361406 170361406 C T BBS5 3'UTR 0.38 TCGA-CA-6718-01 2 170592003 170592003 G T KLHL23 Missense_Mutation p.R160I 0.49 deleterious(0) probably_damaging(0.985) TCGA-CA-6718-01 2 170917894 170917894 C A UBR3 Missense_Mutation p.L1654I 0.57 deleterious(0.01) benign(0.028) TCGA-CA-6718-01 2 172248669 172248669 A T METTL8 Silent p.I9I 0.38 TCGA-CA-6718-01 2 172398198 172398198 C T CYBRD1 Silent p.I99I 0.51 TCGA-CA-6718-01 2 173355813 173355813 A C ITGA6 Missense_Mutation p.K914T 0.55 tolerated(0.54) benign(0.02) TCGA-CA-6718-01 2 174940044 174940044 G T OLA1 3'UTR 0.60 TCGA-CA-6718-01 2 175330579 175330579 A C GPR155 Missense_Mutation p.F440V 0.47 tolerated(0.49) benign(0.009) TCGA-CA-6718-01 2 175426906 175426906 G T WIPF1 3'UTR 0.08 TCGA-CA-6718-01 2 175431880 175431880 C T WIPF1 Silent p.P458P 0.41 TCGA-CA-6718-01 2 175809638 175809638 C T CHN1 Missense_Mutation p.R31Q 0.56 tolerated(0.26) benign(0.003) TCGA-CA-6718-01 2 175939488 175939488 G A ATF2 Missense_Mutation p.S456L 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6718-01 2 176802226 176802226 G T KIAA1715 Nonsense_Mutation p.Y300* 0.40 TCGA-CA-6718-01 2 178482879 178482879 G A TTC30A Missense_Mutation p.S184L 0.52 tolerated(0.82) benign(0.001) TCGA-CA-6718-01 2 178705036 178705036 G T PDE11A Nonsense_Mutation p.S481* 0.36 TCGA-CA-6718-01 2 17898403 17898403 T G SMC6 Missense_Mutation p.K378T 0.15 tolerated(0.05) benign(0.088) TCGA-CA-6718-01 2 179330555 179330555 T G FKBP7 Missense_Mutation p.D204A 0.18 deleterious(0) possibly_damaging(0.789) TCGA-CA-6718-01 2 179341836 179341836 C T FKBP7 Missense_Mutation p.R109Q 0.29 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 179429331 179429331 G A TTN Silent p.R27176R 0.16 TCGA-CA-6718-01 2 179440930 179440930 T C TTN Missense_Mutation p.E23310G 0.52 TCGA-CA-6718-01 2 179453263 179453263 A G TTN Splice_Site p.X21063_splice 0.16 TCGA-CA-6718-01 2 179571216 179571216 C A TTN Missense_Mutation p.E9795D 0.56 TCGA-CA-6718-01 2 179575938 179575938 T C TTN Missense_Mutation p.K9342R 0.32 TCGA-CA-6718-01 2 179585769 179585769 G T TTN Missense_Mutation p.F7659L 0.08 TCGA-CA-6718-01 2 179586852 179586852 T G TTN Missense_Mutation p.K7513T 0.46 TCGA-CA-6718-01 2 179588329 179588329 G T TTN Missense_Mutation p.F7166L 0.50 TCGA-CA-6718-01 2 179588810 179588810 G T TTN Missense_Mutation p.A7059D 0.71 TCGA-CA-6718-01 2 179598352 179598352 A C TTN Nonsense_Mutation p.L5255* 0.51 TCGA-CA-6718-01 2 179610510 179610510 G A TTN Intron 0.54 TCGA-CA-6718-01 2 179613439 179613439 G T TTN Intron 0.53 TCGA-CA-6718-01 2 179615321 179615321 G A TTN Intron 0.47 TCGA-CA-6718-01 2 179615601 179615601 A G TTN Intron 0.11 TCGA-CA-6718-01 2 17963004 17963004 G A GEN1 Missense_Mutation p.S842N 0.17 tolerated(1) benign(0) TCGA-CA-6718-01 2 182394329 182394329 C A ITGA4 Missense_Mutation p.S831Y 0.12 tolerated(0.28) possibly_damaging(0.819) TCGA-CA-6718-01 2 182400261 182400261 C A ITGA4 3'UTR 0.12 TCGA-CA-6718-01 2 182784027 182784027 G T SSFA2 Nonsense_Mutation p.E1000* 0.71 TCGA-CA-6718-01 2 183070788 183070788 C T PDE1A Missense_Mutation p.D277N 0.41 deleterious(0.03) probably_damaging(0.913) TCGA-CA-6718-01 2 183291351 183291351 C A PDE1A Intron 0.40 TCGA-CA-6718-01 2 185800545 185800545 C A ZNF804A Missense_Mutation p.T141N 0.28 deleterious(0) probably_damaging(0.987) TCGA-CA-6718-01 2 186671501 186671501 A G FSIP2 Missense_Mutation p.K5912R 0.51 benign(0.088) TCGA-CA-6718-01 2 186678473 186678473 G T FSIP2 Nonsense_Mutation p.E6766* 0.41 TCGA-CA-6718-01 2 187703804 187703804 C T ZSWIM2 Missense_Mutation p.E126K 0.09 tolerated(0.54) benign(0.003) TCGA-CA-6718-01 2 189849647 189849647 T C COL3A1 Missense_Mutation p.F81L 0.55 unknown(0) TCGA-CA-6718-01 2 189875382 189875382 C T COL3A1 Silent p.Y1340Y 0.40 TCGA-CA-6718-01 2 190430247 190430247 A C SLC40A1 Missense_Mutation p.F198C 0.67 deleterious(0) possibly_damaging(0.877) TCGA-CA-6718-01 2 190609477 190609477 G T ANKAR Missense_Mutation p.K1340N 0.38 tolerated(0.13) benign(0.005) TCGA-CA-6718-01 2 191064678 191064678 A C C2orf88 Missense_Mutation p.E31A 0.53 deleterious(0.03) benign(0.356) TCGA-CA-6718-01 2 191073615 191073615 C T HIBCH Missense_Mutation p.V346I 0.29 tolerated(0.08) benign(0.092) TCGA-CA-6718-01 2 191859911 191859911 G A STAT1 Missense_Mutation p.R274W 0.45 deleterious(0.01) possibly_damaging(0.781) TCGA-CA-6718-01 2 191941042 191941042 G T STAT4 Missense_Mutation p.H95N 0.11 tolerated(0.24) possibly_damaging(0.524) TCGA-CA-6718-01 2 196749476 196749476 G A DNAH7 Nonsense_Mutation p.R1866* 0.13 TCGA-CA-6718-01 2 196889192 196889192 T G DNAH7 Missense_Mutation p.D235A 0.09 tolerated(0.66) benign(0.002) TCGA-CA-6718-01 2 196912110 196912110 C A DNAH7 Nonsense_Mutation p.E122* 0.46 TCGA-CA-6718-01 2 196912118 196912118 T G DNAH7 Missense_Mutation p.K119T 0.48 deleterious(0.01) benign(0.25) TCGA-CA-6718-01 2 197597218 197597218 C T CCDC150 Nonsense_Mutation p.R1080* 0.29 TCGA-CA-6718-01 2 197708622 197708622 T G PGAP1 Missense_Mutation p.K839Q 0.49 deleterious(0.01) benign(0.061) TCGA-CA-6718-01 2 198571370 198571370 G T MARS2 Missense_Mutation p.R414I 0.41 tolerated(0.06) benign(0.002) TCGA-CA-6718-01 2 198643784 198643784 C T BOLL Missense_Mutation p.E58K 0.53 deleterious(0) probably_damaging(0.918) TCGA-CA-6718-01 2 198646555 198646555 G A BOLL Missense_Mutation p.S19F 0.46 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-CA-6718-01 2 198948695 198948695 G T PLCL1 Missense_Mutation p.D152Y 0.51 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 2 198949680 198949680 T G PLCL1 Missense_Mutation p.F480C 0.39 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 2 201171140 201171140 A C SPATS2L Intron 0.11 TCGA-CA-6718-01 2 201437712 201437712 G T SGOL2 Missense_Mutation p.Q881H 0.50 tolerated(0.07) benign(0.008) TCGA-CA-6718-01 2 201718090 201718090 C A CLK1 Missense_Mutation p.R507I 0.56 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 202149770 202149770 G T CASP8 Missense_Mutation p.C404F 0.41 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 202489017 202489017 T G TMEM237 Missense_Mutation p.E396D 0.43 tolerated(0.19) benign(0.021) TCGA-CA-6718-01 2 202609119 202609119 C A ALS2 Missense_Mutation p.D678Y 0.11 deleterious(0.04) possibly_damaging(0.615) TCGA-CA-6718-01 2 203072003 203072003 T C SUMO1 Silent p.E93E 0.08 TCGA-CA-6718-01 2 203972896 203972896 G T NBEAL1 Missense_Mutation p.R616M 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 204824308 204824308 G T ICOS Splice_Site p.X196_splice 0.43 TCGA-CA-6718-01 2 207604324 207604324 G T MDH1B Missense_Mutation p.F507L 0.51 tolerated_low_confidence(0.79) benign(0) TCGA-CA-6718-01 2 208618401 208618401 C G CCNYL1 Silent p.R302R 0.43 TCGA-CA-6718-01 2 209025629 209025629 G A CRYGA Missense_Mutation p.R142W 0.11 deleterious(0.04) benign(0.27) TCGA-CA-6718-01 2 210559007 210559007 C T MAP2 Missense_Mutation p.P705S 0.15 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 210887654 210887654 T G KANSL1L 3'UTR 0.52 TCGA-CA-6718-01 2 21235078 21235078 G T APOB Silent p.I1554I 0.17 TCGA-CA-6718-01 2 215910702 215910702 T G ABCA12 Missense_Mutation p.Q244P 0.46 tolerated(0.16) benign(0.05) TCGA-CA-6718-01 2 215914452 215914452 G T ABCA12 Missense_Mutation p.F197L 0.48 tolerated(1) benign(0.001) TCGA-CA-6718-01 2 217279596 217279596 T G SMARCAL1 Missense_Mutation p.F57V 0.48 tolerated_low_confidence(0.32) benign(0.001) TCGA-CA-6718-01 2 218669310 218669310 C T TNS1 Missense_Mutation p.A1694T 0.49 deleterious(0.01) probably_damaging(1) TCGA-CA-6718-01 2 219555251 219555251 G T STK36 Missense_Mutation p.E579D 0.46 tolerated(0.27) benign(0.014) TCGA-CA-6718-01 2 219826850 219826850 G T CDK5R2 3'UTR 0.53 TCGA-CA-6718-01 2 220428291 220428291 G A OBSL1 Silent p.S822S 0.46 TCGA-CA-6718-01 2 220501566 220501566 C A SLC4A3 Missense_Mutation p.F862L 0.54 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 2 223559111 223559111 C T MOGAT1 Missense_Mutation p.S170F 0.57 deleterious(0) possibly_damaging(0.879) TCGA-CA-6718-01 2 224462156 224462156 T G SCG2 Missense_Mutation p.E615D 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6718-01 2 225695295 225695295 G A DOCK10 Missense_Mutation p.S1000L 0.56 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 2 227660756 227660756 T G IRS1 Missense_Mutation p.E900A 0.11 deleterious(0.01) benign(0.069) TCGA-CA-6718-01 2 227922200 227922200 C A COL4A4 Missense_Mutation p.G834W 0.16 unknown(0) TCGA-CA-6718-01 2 228388544 228388544 C T AGFG1 Missense_Mutation p.A148V 0.37 tolerated(0.06) benign(0.335) TCGA-CA-6718-01 2 231973388 231973388 T G HTR2B Missense_Mutation p.K430T 0.14 deleterious_low_confidence(0.01) benign(0.282) TCGA-CA-6718-01 2 233321344 233321344 G A ALPI Missense_Mutation p.G80D 0.44 deleterious(0.04) benign(0.35) TCGA-CA-6718-01 2 234432051 234432051 C A USP40 Nonsense_Mutation p.E667* 0.48 TCGA-CA-6718-01 2 234601855 234601855 G T UGT1A6 Nonsense_Mutation p.E69* 0.17 TCGA-CA-6718-01 2 234749775 234749775 T C HJURP Missense_Mutation p.I551V 0.12 tolerated(0.43) benign(0) TCGA-CA-6718-01 2 234869548 234869548 C A TRPM8 Missense_Mutation p.F497L 0.44 deleterious(0) benign(0.156) TCGA-CA-6718-01 2 237374178 237374178 T G IQCA1 Missense_Mutation p.D299A 0.14 deleterious(0) benign(0.153) TCGA-CA-6718-01 2 237405953 237405953 G A IQCA1 Silent p.F63F 0.14 TCGA-CA-6718-01 2 242438732 242438732 G A STK25 Silent p.F175F 0.13 TCGA-CA-6718-01 2 24262369 24262369 T C C2orf44 5'UTR 0.42 TCGA-CA-6718-01 2 242742810 242742810 C T GAL3ST2 Silent p.N142N 0.36 TCGA-CA-6718-01 2 253085 253085 G A SH3YL1 Missense_Mutation p.S11L 0.38 deleterious(0) probably_damaging(0.971) TCGA-CA-6718-01 2 25315905 25315905 A G EFR3B Missense_Mutation p.T40A 0.16 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 2 25366693 25366693 C T EFR3B Missense_Mutation p.S671L 0.16 tolerated(0.2) benign(0.072) TCGA-CA-6718-01 2 26501641 26501641 A C HADHB Missense_Mutation p.K201T 0.27 tolerated(0.33) benign(0.143) TCGA-CA-6718-01 2 26647225 26647225 G T DRC1 Missense_Mutation p.R148I 0.26 tolerated(0.05) benign(0.062) TCGA-CA-6718-01 2 27150132 27150132 A C DPYSL5 Missense_Mutation p.E144D 0.22 tolerated(0.08) benign(0.115) TCGA-CA-6718-01 2 27294330 27294330 T G OST4 Translation_Start_Site p.M1? 0.38 tolerated(0.06) benign(0.001) TCGA-CA-6718-01 2 27438553 27438553 T G ATRAID Missense_Mutation p.I195S 0.17 deleterious(0) possibly_damaging(0.558) TCGA-CA-6718-01 2 27657414 27657414 C T NRBP1 Missense_Mutation p.T171M 0.35 deleterious(0.03) probably_damaging(0.984) TCGA-CA-6718-01 2 27802467 27802467 G T C2orf16 Nonsense_Mutation p.E1010* 0.35 TCGA-CA-6718-01 2 27873021 27873021 T G GPN1 Missense_Mutation p.F374C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 2 29092637 29092637 C A TRMT61B Missense_Mutation p.K169N 0.32 deleterious(0) probably_damaging(0.973) TCGA-CA-6718-01 2 29217725 29217725 G A FAM179A Missense_Mutation p.E9K 0.24 tolerated(0.07) benign(0.001) TCGA-CA-6718-01 2 29294756 29294756 G T C2orf71 Missense_Mutation p.S791Y 0.37 tolerated(1) benign(0.004) TCGA-CA-6718-01 2 29295353 29295353 G A C2orf71 Missense_Mutation p.T592M 0.56 deleterious(0) benign(0.026) TCGA-CA-6718-01 2 30381548 30381548 C T YPEL5 Nonsense_Mutation p.R69* 0.41 TCGA-CA-6718-01 2 31410633 31410633 G T CAPN14 Missense_Mutation p.F526L 0.17 tolerated(0.89) benign(0) TCGA-CA-6718-01 2 32094970 32094970 T G MEMO1 Missense_Mutation p.K237Q 0.40 tolerated(0.14) benign(0.076) TCGA-CA-6718-01 2 32449689 32449689 T G NLRC4 Missense_Mutation p.E976D 0.24 tolerated(0.51) benign(0.001) TCGA-CA-6718-01 2 32640529 32640529 A C BIRC6 Missense_Mutation p.K724Q 0.22 probably_damaging(0.991) TCGA-CA-6718-01 2 32641017 32641017 G T BIRC6 Missense_Mutation p.K886N 0.46 benign(0.001) TCGA-CA-6718-01 2 32661227 32661227 G A BIRC6 Silent p.T1202T 0.13 TCGA-CA-6718-01 2 32754865 32754865 C A BIRC6 Missense_Mutation p.S4023Y 0.33 probably_damaging(0.929) TCGA-CA-6718-01 2 32800267 32800267 G A BIRC6 Missense_Mutation p.E4397K 0.45 possibly_damaging(0.715) TCGA-CA-6718-01 2 33951982 33951982 G A AC009499.1 Intron 0.42 TCGA-CA-6718-01 2 3518672 3518672 C A ADI1 Intron 0.39 TCGA-CA-6718-01 2 37035974 37035974 G T VIT Missense_Mutation p.W583C 0.16 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 2 37227768 37227768 G A HEATR5B Missense_Mutation p.R1836C 0.23 deleterious(0.03) benign(0.302) TCGA-CA-6718-01 2 3743322 3743322 G A ALLC Missense_Mutation p.R176Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 2 37600000 37600000 C A QPCT 3'UTR 0.53 TCGA-CA-6718-01 2 38179113 38179113 G A RMDN2 Missense_Mutation p.R252H 0.13 tolerated(0.13) benign(0) TCGA-CA-6718-01 2 38301839 38301839 G A CYP1B1 Silent p.F231F 0.42 TCGA-CA-6718-01 2 38973289 38973289 C A SRSF7 Missense_Mutation p.R220I 0.37 deleterious(0) unknown(0) TCGA-CA-6718-01 2 39081278 39081278 G A DHX57 Silent p.L650L 0.44 TCGA-CA-6718-01 2 39109668 39109668 A C MORN2 3'UTR 0.30 TCGA-CA-6718-01 2 39440588 39440588 C T CDKL4 Missense_Mutation p.V106I 0.22 tolerated(0.96) benign(0.003) TCGA-CA-6718-01 2 39931335 39931335 G A TMEM178A Splice_Site p.X172_splice 0.25 TCGA-CA-6718-01 2 40397449 40397449 C T SLC8A1 Silent p.P670P 0.40 TCGA-CA-6718-01 2 40656630 40656630 T G SLC8A1 Missense_Mutation p.K264T 0.40 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 2 42936311 42936311 T G MTA3 3'UTR 0.23 TCGA-CA-6718-01 2 43971058 43971058 C A PLEKHH2 Missense_Mutation p.S1162Y 0.55 deleterious(0) probably_damaging(0.971) TCGA-CA-6718-01 2 44021559 44021559 T G DYNC2LI1 Intron 0.24 TCGA-CA-6718-01 2 44115643 44115643 G T LRPPRC 3'UTR 0.52 TCGA-CA-6718-01 2 44507924 44507924 A C SLC3A1 Missense_Mutation p.K167T 0.21 deleterious(0.05) possibly_damaging(0.838) TCGA-CA-6718-01 2 44547537 44547537 A G SLC3A1 Missense_Mutation p.N606S 0.26 tolerated(0.09) benign(0.206) TCGA-CA-6718-01 2 45826844 45826844 T G SRBD1 Missense_Mutation p.K131T 0.36 tolerated_low_confidence(0.32) benign(0.011) TCGA-CA-6718-01 2 46059 46059 G T FAM110C Missense_Mutation p.F109L 0.33 tolerated(0.38) benign(0.078) TCGA-CA-6718-01 2 46808258 46808258 C A RHOQ 3'UTR 0.11 TCGA-CA-6718-01 2 46851483 46851483 G T CRIPT 3'UTR 0.36 TCGA-CA-6718-01 2 47045368 47045368 A C LINC01118 Silent p.P108P 0.22 TCGA-CA-6718-01 2 48808877 48808877 G T STON1-GTF2A1L Nonsense_Mutation p.E369* 0.22 TCGA-CA-6718-01 2 50149107 50149107 T C NRXN1 Missense_Mutation p.N1540S 0.33 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-CA-6718-01 2 50779864 50779864 G T NRXN1 Missense_Mutation p.F580L 0.18 tolerated(0.2) benign(0.037) TCGA-CA-6718-01 2 54125444 54125444 C A PSME4 Missense_Mutation p.R1157I 0.19 tolerated(0.08) benign(0.067) TCGA-CA-6718-01 2 55252442 55252442 T G RTN4 Missense_Mutation p.K931N 0.30 tolerated(0.18) benign(0.024) TCGA-CA-6718-01 2 55403027 55403027 A C CLHC1 Missense_Mutation p.L554V 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 2 55544701 55544701 G A CCDC88A Missense_Mutation p.R1200C 0.31 deleterious(0) probably_damaging(0.961) TCGA-CA-6718-01 2 55863478 55863478 C T PNPT1 Missense_Mutation p.R749Q 0.28 deleterious(0.02) possibly_damaging(0.699) TCGA-CA-6718-01 2 56145374 56145374 G T EFEMP1 Missense_Mutation p.P37H 0.24 deleterious(0.04) possibly_damaging(0.898) TCGA-CA-6718-01 2 5838269 5838269 G A SOX11 3'UTR 0.35 TCGA-CA-6718-01 2 5838427 5838427 C A SOX11 3'UTR 0.40 TCGA-CA-6718-01 2 61236054 61236054 C A PUS10 Nonsense_Mutation p.E75* 0.23 TCGA-CA-6718-01 2 61272860 61272860 G A PEX13 Splice_Site p.X263_splice 0.31 TCGA-CA-6718-01 2 61391628 61391628 G A C2orf74 Missense_Mutation p.R184Q 0.38 tolerated(0.58) benign(0) TCGA-CA-6718-01 2 61468720 61468720 A C USP34 Missense_Mutation p.F2251C 0.27 deleterious(0.01) possibly_damaging(0.706) TCGA-CA-6718-01 2 62063184 62063184 T G FAM161A Missense_Mutation p.K604N 0.46 deleterious(0) probably_damaging(0.989) TCGA-CA-6718-01 2 62067079 62067079 G A FAM161A Nonsense_Mutation p.R354* 0.24 TCGA-CA-6718-01 2 62069406 62069406 A C FAM161A Silent p.S91S 0.24 TCGA-CA-6718-01 2 64120637 64120637 C T VPS54 Missense_Mutation p.G954E 0.54 tolerated(1) benign(0.006) TCGA-CA-6718-01 2 64189369 64189369 A T VPS54 Missense_Mutation p.L278H 0.42 tolerated(0.08) probably_damaging(0.971) TCGA-CA-6718-01 2 64208923 64208923 C A VPS54 Missense_Mutation p.D79Y 0.19 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 66796053 66796053 C A MEIS1 Intron 0.21 TCGA-CA-6718-01 2 68361769 68361769 C A WDR92 Intron 0.23 TCGA-CA-6718-01 2 68414408 68414408 C A PPP3R1 Missense_Mutation p.D87Y 0.35 deleterious(0) possibly_damaging(0.799) TCGA-CA-6718-01 2 7030432 7030432 C T RSAD2 Silent p.C288C 0.25 TCGA-CA-6718-01 2 70315746 70315746 A G PCBP1 Missense_Mutation p.I291V 0.24 deleterious(0) possibly_damaging(0.859) TCGA-CA-6718-01 2 70486692 70486692 G T PCYOX1 Missense_Mutation p.D105Y 0.41 deleterious(0.03) possibly_damaging(0.905) TCGA-CA-6718-01 2 70890681 70890681 G A ADD2 Missense_Mutation p.S686L 0.42 tolerated(0.1) benign(0.122) TCGA-CA-6718-01 2 71043689 71043689 C A CLEC4F Missense_Mutation p.R275I 0.12 deleterious(0.01) probably_damaging(0.935) TCGA-CA-6718-01 2 71159946 71159946 G A VAX2 Missense_Mutation p.S162N 0.45 tolerated(0.06) possibly_damaging(0.76) TCGA-CA-6718-01 2 71360379 71360379 A G MPHOSPH10 Silent p.E147E 0.32 TCGA-CA-6718-01 2 71591119 71591119 G A ZNF638 Missense_Mutation p.R485Q 0.40 deleterious(0) probably_damaging(0.973) TCGA-CA-6718-01 2 72740314 72740314 C A EXOC6B Nonsense_Mutation p.E372* 0.14 TCGA-CA-6718-01 2 73455943 73455943 G A PRADC1 Silent p.L142L 0.35 TCGA-CA-6718-01 2 73519253 73519253 C T EGR4 Missense_Mutation p.A368T 0.21 tolerated(0.59) benign(0.014) TCGA-CA-6718-01 2 73717425 73717425 C A ALMS1 Nonsense_Mutation p.S2779* 0.26 TCGA-CA-6718-01 2 73868386 73868386 C A NAT8 Missense_Mutation p.A124S 0.52 deleterious(0.02) benign(0.378) TCGA-CA-6718-01 2 74002112 74002112 T G DUSP11 Missense_Mutation p.K126N 0.21 tolerated(0.12) benign(0.257) TCGA-CA-6718-01 2 74274078 74274078 G A TET3 Missense_Mutation p.S210N 0.44 tolerated(0.21) benign(0.006) TCGA-CA-6718-01 2 74326430 74326430 C T TET3 Missense_Mutation p.R964C 0.35 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 2 74653327 74653327 C A RTKN 3'UTR 0.46 TCGA-CA-6718-01 2 74692099 74692099 C A MOGS Silent p.P92P 0.25 TCGA-CA-6718-01 2 74756624 74756624 A C AUP1 Missense_Mutation p.L18R 0.15 tolerated(0.11) probably_damaging(0.983) TCGA-CA-6718-01 2 74808925 74808925 A G M1AP Silent p.D215D 0.43 TCGA-CA-6718-01 2 79878690 79878690 C T CTNNA2 Missense_Mutation p.S3L 0.35 tolerated_low_confidence(0.11) benign(0.049) TCGA-CA-6718-01 2 80772161 80772161 C T CTNNA2 Missense_Mutation p.R449W 0.50 deleterious(0) possibly_damaging(0.886) TCGA-CA-6718-01 2 80801364 80801364 G T CTNNA2 Missense_Mutation p.E606D 0.48 tolerated(0.28) benign(0.281) TCGA-CA-6718-01 2 85778715 85778715 A C GGCX Missense_Mutation p.F543C 0.38 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 2 86354409 86354409 A C PTCD3 Missense_Mutation p.E359D 0.16 deleterious(0) probably_damaging(0.925) TCGA-CA-6718-01 2 86437614 86437614 G T MRPL35 Missense_Mutation p.K130N 0.26 deleterious(0) possibly_damaging(0.676) TCGA-CA-6718-01 2 86968055 86968055 G A RMND5A Missense_Mutation p.D50N 0.16 tolerated(0.1) benign(0.103) TCGA-CA-6718-01 2 86992260 86992260 G A RMND5A Missense_Mutation p.R211Q 0.19 tolerated(0.6) benign(0.003) TCGA-CA-6718-01 2 87069422 87069422 T C CD8B Intron 0.20 TCGA-CA-6718-01 2 88747842 88747842 A C FOXI3 RNA 0.08 TCGA-CA-6718-01 2 89086122 89086122 G T ANKRD36BP2 RNA 0.43 TCGA-CA-6718-01 2 89103787 89103787 G T ANKRD36BP2 RNA 0.37 TCGA-CA-6718-01 2 89103883 89103883 C A ANKRD36BP2 RNA 0.07 TCGA-CA-6718-01 2 89442168 89442168 G A IGKV3-20 Silent p.I79I 0.21 TCGA-CA-6718-01 2 89476107 89476107 A T IGKV2-24 Missense_Mutation p.I22N 0.22 deleterious(0) possibly_damaging(0.86) TCGA-CA-6718-01 2 89513104 89513104 C T IGKV1-27 Missense_Mutation p.S52N 0.37 tolerated(0.28) benign(0.007) TCGA-CA-6718-01 2 90229384 90229384 C T IGKV1D-42 Silent p.L68L 0.21 TCGA-CA-6718-01 2 9546848 9546848 T G ITGB1BP1 3'UTR 0.24 TCGA-CA-6718-01 2 95815545 95815545 C T ZNF514 Missense_Mutation p.E229K 0.25 deleterious(0.02) probably_damaging(0.94) TCGA-CA-6718-01 2 95815782 95815782 C A ZNF514 Missense_Mutation p.D150Y 0.45 tolerated(0.73) benign(0.104) TCGA-CA-6718-01 2 95945608 95945608 C T PROM2 Silent p.C430C 0.11 TCGA-CA-6718-01 2 95947016 95947016 C T PROM2 Missense_Mutation p.A485V 0.25 deleterious(0.01) possibly_damaging(0.755) TCGA-CA-6718-01 2 96260054 96260054 A G TRIM43 Missense_Mutation p.T95A 0.28 tolerated(0.16) possibly_damaging(0.729) TCGA-CA-6718-01 2 9633899 9633899 T G ADAM17 Missense_Mutation p.D657A 0.41 deleterious(0) possibly_damaging(0.781) TCGA-CA-6718-01 2 96523185 96523185 T G ANKRD36C Missense_Mutation p.K345Q 0.25 deleterious(0.02) benign(0.037) TCGA-CA-6718-01 2 96533188 96533188 C T ANKRD36C Missense_Mutation p.D255N 0.24 deleterious(0.02) probably_damaging(0.981) TCGA-CA-6718-01 2 9725381 9725381 C A YWHAQ 3'UTR 0.34 TCGA-CA-6718-01 2 97370411 97370411 T C LMAN2L 3'Flank 0.36 TCGA-CA-6718-01 2 97877293 97877293 G A ANKRD36 Silent p.P1126P 0.39 TCGA-CA-6718-01 2 98201526 98201526 C T ANKRD36B RNA 0.17 TCGA-CA-6718-01 2 99767262 99767262 G T C2ORF15 Nonsense_Mutation p.E115* 0.21 TCGA-CA-6718-01 2 99767362 99767362 G T C2ORF15 3'UTR 0.43 TCGA-CA-6718-01 2 99901199 99901199 C A LYG1 Nonsense_Mutation p.E140* 0.19 TCGA-CA-6718-01 3 100467371 100467371 G A TFG Missense_Mutation p.R400Q 0.46 deleterious_low_confidence(0) benign(0.238) TCGA-CA-6718-01 3 100961663 100961663 C T IMPG2 Missense_Mutation p.R964Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 3 101090959 101090959 C T SENP7 Missense_Mutation p.R230Q 0.47 tolerated(0.3) benign(0.001) TCGA-CA-6718-01 3 101384048 101384048 T C ZBTB11 Silent p.S461S 0.26 TCGA-CA-6718-01 3 101476499 101476499 C A CEP97 Missense_Mutation p.S350Y 0.33 deleterious(0) possibly_damaging(0.627) TCGA-CA-6718-01 3 105264113 105264113 T G ALCAM Missense_Mutation p.I346M 0.29 deleterious(0.01) possibly_damaging(0.595) TCGA-CA-6718-01 3 108096321 108096321 A C HHLA2 3'UTR 0.53 TCGA-CA-6718-01 3 108363156 108363156 G T DZIP3 Missense_Mutation p.K429N 0.31 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-CA-6718-01 3 108782071 108782071 G T MORC1 Missense_Mutation p.L275I 0.11 tolerated(0.09) possibly_damaging(0.545) TCGA-CA-6718-01 3 108813806 108813806 T G MORC1 Missense_Mutation p.K178T 0.18 deleterious(0.04) possibly_damaging(0.701) TCGA-CA-6718-01 3 109027127 109027127 A G DPPA2 Missense_Mutation p.M137T 0.38 tolerated(1) benign(0) TCGA-CA-6718-01 3 111263990 111263990 C T CD96 Silent p.F53F 0.31 TCGA-CA-6718-01 3 111760811 111760811 C T TMPRSS7 Missense_Mutation p.R3C 0.26 deleterious(0.04) benign(0.107) TCGA-CA-6718-01 3 112063894 112063894 C A CD200 Silent p.L85L 0.28 TCGA-CA-6718-01 3 113376264 113376264 G T KIAA2018 Missense_Mutation p.S1422Y 0.31 possibly_damaging(0.907) TCGA-CA-6718-01 3 113378536 113378536 A G KIAA2018 Missense_Mutation p.S665P 0.28 probably_damaging(0.997) TCGA-CA-6718-01 3 113723543 113723543 G T KIAA1407 Missense_Mutation p.S640Y 0.29 tolerated(0.78) benign(0.028) TCGA-CA-6718-01 3 113847662 113847662 C T DRD3 Silent p.T368T 0.33 TCGA-CA-6718-01 3 115342454 115342454 G T GAP43 5'UTR 0.38 TCGA-CA-6718-01 3 119120974 119120974 G A ARHGAP31 Missense_Mutation p.D459N 0.31 tolerated(0.2) possibly_damaging(0.856) TCGA-CA-6718-01 3 119133757 119133757 G A ARHGAP31 Missense_Mutation p.R994K 0.44 tolerated(0.39) benign(0.002) TCGA-CA-6718-01 3 119151048 119151048 C T TMEM39A Missense_Mutation p.R416Q 0.21 tolerated(0.2) benign(0.137) TCGA-CA-6718-01 3 119256220 119256220 G T CD80 Missense_Mutation p.S155Y 0.36 tolerated(0.06) possibly_damaging(0.565) TCGA-CA-6718-01 3 119434414 119434414 A G MAATS1 Missense_Mutation p.E169G 0.17 deleterious(0.03) benign(0.008) TCGA-CA-6718-01 3 120393751 120393751 C A HGD Missense_Mutation p.R58I 0.42 deleterious(0) probably_damaging(0.96) TCGA-CA-6718-01 3 121190872 121190872 C A POLQ Missense_Mutation p.R2228I 0.30 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 3 121190966 121190966 T G POLQ Missense_Mutation p.I2197L 0.44 deleterious(0.03) benign(0.11) TCGA-CA-6718-01 3 121341804 121341804 C T FBXO40 Nonsense_Mutation p.R510* 0.26 TCGA-CA-6718-01 3 121413732 121413732 T G GOLGB1 Missense_Mutation p.S1880R 0.25 benign(0.255) TCGA-CA-6718-01 3 121448765 121448765 C A GOLGB1 Missense_Mutation p.D66Y 0.24 probably_damaging(0.947) TCGA-CA-6718-01 3 121634114 121634114 C T SLC15A2 Missense_Mutation p.S190F 0.22 deleterious(0) benign(0.167) TCGA-CA-6718-01 3 121647961 121647961 C T SLC15A2 Missense_Mutation p.R492C 0.26 tolerated(0.17) benign(0.009) TCGA-CA-6718-01 3 122087021 122087021 A C CCDC58 Splice_Site p.X108_splice 0.27 TCGA-CA-6718-01 3 122133608 122133608 A C WDR5B Nonsense_Mutation p.Y256* 0.27 TCGA-CA-6718-01 3 122186228 122186228 C A KPNA1 Nonsense_Mutation p.E60* 0.25 TCGA-CA-6718-01 3 122334657 122334657 G T PARP15 Missense_Mutation p.R268I 0.28 tolerated(0.15) benign(0.008) TCGA-CA-6718-01 3 122420111 122420111 A G PARP14 Missense_Mutation p.S904G 0.23 deleterious(0.01) possibly_damaging(0.891) TCGA-CA-6718-01 3 123166391 123166391 G T ADCY5 Missense_Mutation p.F334L 0.40 tolerated(0.07) benign(0.443) TCGA-CA-6718-01 3 123666085 123666085 A C CCDC14 Missense_Mutation p.S263A 0.25 tolerated(0.24) possibly_damaging(0.467) TCGA-CA-6718-01 3 123813588 123813588 G A KALRN 5'UTR 0.36 TCGA-CA-6718-01 3 124453952 124453952 T G UMPS Missense_Mutation p.L57V 0.24 deleterious(0.03) possibly_damaging(0.629) TCGA-CA-6718-01 3 124482440 124482440 C T ITGB5 3'UTR 0.38 TCGA-CA-6718-01 3 124739746 124739746 G A HEG1 Missense_Mutation p.S381L 0.35 tolerated(0.49) benign(0.001) TCGA-CA-6718-01 3 124952538 124952538 A C ZNF148 Missense_Mutation p.D344E 0.27 tolerated(0.7) benign(0.017) TCGA-CA-6718-01 3 126135212 126135212 G A CCDC37 Silent p.S93S 0.13 TCGA-CA-6718-01 3 126291098 126291098 G T TXNRD3NB Missense_Mutation p.P97T 0.24 possibly_damaging(0.803) TCGA-CA-6718-01 3 128690164 128690164 G T KIAA1257 Missense_Mutation p.F378L 0.14 deleterious(0.01) possibly_damaging(0.654) TCGA-CA-6718-01 3 128711999 128711999 C T KIAA1257 Missense_Mutation p.R50H 0.11 tolerated(1) benign(0.005) TCGA-CA-6718-01 3 129151968 129151968 G A MBD4 Missense_Mutation p.R512W 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 3 129389545 129389545 A C TMCC1 Missense_Mutation p.F380C 0.23 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 3 130107629 130107629 G T COL6A5 Nonsense_Mutation p.E690* 0.20 TCGA-CA-6718-01 3 130116738 130116738 T G COL6A5 Missense_Mutation p.F1294V 0.35 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 3 130828659 130828659 G A NEK11 Missense_Mutation p.D117N 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-CA-6718-01 3 131208904 131208904 T A MRPL3 Missense_Mutation p.E163D 0.15 tolerated(0.4) benign(0.233) TCGA-CA-6718-01 3 132242011 132242011 A C DNAJC13 Missense_Mutation p.N1952H 0.26 tolerated(0.11) benign(0.008) TCGA-CA-6718-01 3 132245081 132245081 A G DNAJC13 Missense_Mutation p.I2113V 0.45 tolerated(0.05) benign(0.004) TCGA-CA-6718-01 3 132349319 132349319 G T ACAD11 Missense_Mutation p.L309I 0.30 tolerated(0.17) benign(0.078) TCGA-CA-6718-01 3 132431986 132431986 G T NPHP3 Missense_Mutation p.H368N 0.25 tolerated(0.92) benign(0.001) TCGA-CA-6718-01 3 133374172 133374172 A C TOPBP1 Missense_Mutation p.M235R 0.11 deleterious(0) probably_damaging(0.974) TCGA-CA-6718-01 3 135870002 135870002 C T MSL2 Missense_Mutation p.R574K 0.34 tolerated(0.1) benign(0.391) TCGA-CA-6718-01 3 135870891 135870891 C A MSL2 Nonsense_Mutation p.E278* 0.25 TCGA-CA-6718-01 3 135913953 135913953 C A MSL2 Translation_Start_Site p.M1? 0.22 deleterious(0) probably_damaging(0.917) TCGA-CA-6718-01 3 13655521 13655521 G A FBLN2 Missense_Mutation p.R529Q 0.32 deleterious(0.04) benign(0.128) TCGA-CA-6718-01 3 137743451 137743451 C A CLDN18 Missense_Mutation p.L130I 0.30 tolerated(0.56) benign(0.011) TCGA-CA-6718-01 3 137811310 137811310 T G DZIP1L Missense_Mutation p.K262T 0.25 deleterious(0.02) benign(0.024) TCGA-CA-6718-01 3 138022480 138022480 C T NME9 Missense_Mutation p.R205Q 0.29 deleterious(0.05) possibly_damaging(0.682) TCGA-CA-6718-01 3 141497624 141497624 C T GRK7 Silent p.F166F 0.39 TCGA-CA-6718-01 3 141724334 141724334 C A TFDP2 Missense_Mutation p.K45N 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-CA-6718-01 3 142274944 142274944 C A ATR Nonsense_Mutation p.E706* 0.29 TCGA-CA-6718-01 3 142503742 142503742 A C TRPC1 Missense_Mutation p.K386T 0.28 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 3 142525070 142525070 G T TRPC1 Missense_Mutation p.R792I 0.36 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-CA-6718-01 3 142537162 142537162 G T PCOLCE2 3'UTR 0.30 TCGA-CA-6718-01 3 143185955 143185955 T C SLC9A9 Missense_Mutation p.T465A 0.27 tolerated(0.06) benign(0.01) TCGA-CA-6718-01 3 146239411 146239411 G T PLSCR1 Missense_Mutation p.Q220K 0.25 tolerated(0.17) benign(0.036) TCGA-CA-6718-01 3 14724256 14724256 G A C3orf20 Silent p.Q12Q 0.50 TCGA-CA-6718-01 3 14725814 14725814 G A C3orf20 Missense_Mutation p.A184T 0.17 tolerated(0.06) benign(0.356) TCGA-CA-6718-01 3 14770072 14770072 G A C3orf20 Missense_Mutation p.R606Q 0.26 tolerated(0.27) benign(0.408) TCGA-CA-6718-01 3 150931532 150931532 G A P2RY14 Silent p.F191F 0.28 TCGA-CA-6718-01 3 151155759 151155759 G T IGSF10 Missense_Mutation p.S2197Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 3 151160961 151160961 G A IGSF10 Missense_Mutation p.S1925L 0.28 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 3 151545463 151545463 A C AADAC Missense_Mutation p.N235H 0.28 deleterious(0.03) probably_damaging(0.928) TCGA-CA-6718-01 3 151599220 151599220 C A SUCNR1 Missense_Mutation p.L297I 0.24 deleterious(0) possibly_damaging(0.899) TCGA-CA-6718-01 3 152555090 152555090 T A P2RY1 3'UTR 0.12 TCGA-CA-6718-01 3 152555291 152555291 G T P2RY1 3'UTR 0.34 TCGA-CA-6718-01 3 152881563 152881563 A C RAP2B 3'UTR 0.47 TCGA-CA-6718-01 3 153943742 153943742 A C ARHGEF26 Missense_Mutation p.K678T 0.36 deleterious(0.01) benign(0.102) TCGA-CA-6718-01 3 154055826 154055826 C T GPR149 Missense_Mutation p.E620K 0.19 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 3 154834751 154834751 G T MME Missense_Mutation p.K210N 0.36 tolerated(0.06) probably_damaging(0.948) TCGA-CA-6718-01 3 156181517 156181517 A C KCNAB1 Missense_Mutation p.K170T 0.29 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 3 157154702 157154702 G T PTX3 5'UTR 0.25 TCGA-CA-6718-01 3 157839924 157839924 G T RSRC1 Nonsense_Mutation p.E11* 0.25 TCGA-CA-6718-01 3 158539861 158539861 G A MFSD1 Missense_Mutation p.A386T 0.22 deleterious(0) possibly_damaging(0.485) TCGA-CA-6718-01 3 160083902 160083902 C T IFT80 Missense_Mutation p.E160K 0.17 tolerated(0.06) benign(0.002) TCGA-CA-6718-01 3 160958906 160958906 C T NMD3 Nonsense_Mutation p.R276* 0.19 TCGA-CA-6718-01 3 161221492 161221492 G A OTOL1 Missense_Mutation p.R399Q 0.25 tolerated(0.13) probably_damaging(0.994) TCGA-CA-6718-01 3 167078470 167078470 C A ZBBX Missense_Mutation p.Q105H 0.07 deleterious(0.02) benign(0.149) TCGA-CA-6718-01 3 168838897 168838897 G A MECOM Missense_Mutation p.S237L 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 3 168845847 168845847 T G MECOM Missense_Mutation p.E81D 0.31 tolerated(0.16) probably_damaging(0.928) TCGA-CA-6718-01 3 169540726 169540726 A G LRRIQ4 Silent p.G339G 0.38 TCGA-CA-6718-01 3 169663660 169663660 C A RP11-379K17.4 RNA 0.35 TCGA-CA-6718-01 3 17053051 17053051 C A PLCL2 Missense_Mutation p.S612Y 0.26 deleterious(0) probably_damaging(0.99) TCGA-CA-6718-01 3 170584042 170584042 T G RPL22L1 3'UTR 0.38 TCGA-CA-6718-01 3 172473282 172473282 A C ECT2 Missense_Mutation p.I74L 0.24 tolerated(0.15) benign(0.03) TCGA-CA-6718-01 3 173525607 173525607 C T NLGN1 Nonsense_Mutation p.R211* 0.21 TCGA-CA-6718-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.28 tolerated(0.06) probably_damaging(0.998) TCGA-CA-6718-01 3 178941877 178941877 G T PIK3CA Missense_Mutation p.M732I 0.16 tolerated(0.1) benign(0.005) TCGA-CA-6718-01 3 178952086 178952086 T G PIK3CA Missense_Mutation p.H1047Q 0.35 tolerated(0.24) benign(0.076) TCGA-CA-6718-01 3 180359964 180359964 A C CCDC39 Nonsense_Mutation p.L564* 0.19 TCGA-CA-6718-01 3 180372579 180372579 C A CCDC39 Nonsense_Mutation p.E301* 0.24 TCGA-CA-6718-01 3 181431454 181431454 T G SOX2 3'UTR 0.23 TCGA-CA-6718-01 3 181431633 181431633 G T SOX2 3'UTR 0.27 TCGA-CA-6718-01 3 182538134 182538134 A C ATP11B Missense_Mutation p.K38N 0.24 deleterious(0.05) benign(0.027) TCGA-CA-6718-01 3 182665112 182665112 T G DCUN1D1 Missense_Mutation p.K205T 0.24 deleterious(0.01) possibly_damaging(0.685) TCGA-CA-6718-01 3 182756919 182756919 G A MCCC1 Silent p.D424D 0.39 TCGA-CA-6718-01 3 182910879 182910879 C T MCF2L2 Missense_Mutation p.G975D 0.35 tolerated(0.36) benign(0.005) TCGA-CA-6718-01 3 182925518 182925518 G A MCF2L2 Nonsense_Mutation p.R864* 0.21 TCGA-CA-6718-01 3 182947467 182947467 C T MCF2L2 Missense_Mutation p.E678K 0.28 deleterious(0.02) possibly_damaging(0.59) TCGA-CA-6718-01 3 182989681 182989681 C A B3GNT5 3'UTR 0.25 TCGA-CA-6718-01 3 183446569 183446569 A C YEATS2 Missense_Mutation p.N248H 0.24 tolerated(0.09) benign(0.063) TCGA-CA-6718-01 3 183689567 183689567 T G ABCC5 Missense_Mutation p.K515N 0.22 tolerated(0.33) benign(0.002) TCGA-CA-6718-01 3 183754192 183754192 C T HTR3D Missense_Mutation p.A137V 0.26 tolerated(0.07) benign(0.267) TCGA-CA-6718-01 3 183777999 183777999 T G HTR3C Missense_Mutation p.D401E 0.26 tolerated(0.3) benign(0.019) TCGA-CA-6718-01 3 184023858 184023858 C T PSMD2 Silent p.I573I 0.37 TCGA-CA-6718-01 3 184076859 184076859 G A CLCN2 Missense_Mutation p.R42C 0.39 deleterious(0) probably_damaging(0.932) TCGA-CA-6718-01 3 184104840 184104840 G T CHRD Missense_Mutation p.E764D 0.34 tolerated(0.26) benign(0.008) TCGA-CA-6718-01 3 18436199 18436199 G T SATB1 Missense_Mutation p.L321M 0.09 deleterious(0) possibly_damaging(0.805) TCGA-CA-6718-01 3 186449380 186449380 G A KNG1 Missense_Mutation p.R240Q 0.27 tolerated(0.18) benign(0.016) TCGA-CA-6718-01 3 186961315 186961315 G A MASP1 Silent p.Y395Y 0.24 TCGA-CA-6718-01 3 186980363 186980363 A C MASP1 Missense_Mutation p.F128C 0.26 deleterious(0) probably_damaging(0.969) TCGA-CA-6718-01 3 188590442 188590442 C T LPP Missense_Mutation p.P534L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 3 190366275 190366275 C A IL1RAP Intron 0.16 TCGA-CA-6718-01 3 193019017 193019017 C T ATP13A5 Missense_Mutation p.A920T 0.31 tolerated(0.4) benign(0) TCGA-CA-6718-01 3 195475901 195475901 G A MUC4 Silent p.C5302C 0.18 TCGA-CA-6718-01 3 195615375 195615375 C A TNK2 Missense_Mutation p.D92Y 0.11 deleterious(0) probably_damaging(0.993) TCGA-CA-6718-01 3 19575157 19575157 T G KCNH8 Missense_Mutation p.S964A 0.30 tolerated_low_confidence(0.53) benign(0.001) TCGA-CA-6718-01 3 195802039 195802039 A C TFRC Missense_Mutation p.F77V 0.30 deleterious(0.01) possibly_damaging(0.883) TCGA-CA-6718-01 3 195954986 195954986 G A SLC51A Silent p.S121S 0.22 TCGA-CA-6718-01 3 196050774 196050774 A G TM4SF19 Missense_Mutation p.C182R 0.22 tolerated(0.07) probably_damaging(0.964) TCGA-CA-6718-01 3 196281106 196281106 A C WDR53 Silent p.S351S 0.23 TCGA-CA-6718-01 3 196435420 196435420 G A CEP19 Nonsense_Mutation p.R41* 0.19 TCGA-CA-6718-01 3 196435441 196435441 G T CEP19 Missense_Mutation p.R34S 0.18 deleterious(0) probably_damaging(0.937) TCGA-CA-6718-01 3 196792617 196792617 A C DLG1 Missense_Mutation p.I754S 0.26 deleterious(0) probably_damaging(0.978) TCGA-CA-6718-01 3 197547275 197547275 G T LRCH3 Missense_Mutation p.R205I 0.28 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 3 197751530 197751530 A G LMLN Silent p.E546E 0.25 TCGA-CA-6718-01 3 20225182 20225182 C A SGOL1 Missense_Mutation p.R86I 0.27 deleterious(0) probably_damaging(0.971) TCGA-CA-6718-01 3 21552442 21552442 T G ZNF385D Missense_Mutation p.K117T 0.17 deleterious(0) probably_damaging(0.932) TCGA-CA-6718-01 3 23930839 23930839 T A UBE2E1 Intron 0.33 TCGA-CA-6718-01 3 24018866 24018866 A G NR1D2 Missense_Mutation p.N566D 0.22 deleterious(0.01) possibly_damaging(0.496) TCGA-CA-6718-01 3 25611265 25611265 G T RARB Missense_Mutation p.R155S 0.36 tolerated(0.12) probably_damaging(0.977) TCGA-CA-6718-01 3 25835967 25835967 T C OXSM Silent p.L454L 0.22 TCGA-CA-6718-01 3 27393996 27393996 C A NEK10 Missense_Mutation p.R31I 0.22 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-CA-6718-01 3 27761801 27761801 G T EOMES Missense_Mutation p.F299L 0.18 deleterious(0) probably_damaging(0.964) TCGA-CA-6718-01 3 28368438 28368438 A G AZI2 Silent p.D217D 0.27 TCGA-CA-6718-01 3 33194884 33194884 G T SUSD5 Missense_Mutation p.L414I 0.31 tolerated(0.36) benign(0.049) TCGA-CA-6718-01 3 33441715 33441715 G T UBP1 Missense_Mutation p.F382L 0.25 tolerated(0.08) possibly_damaging(0.488) TCGA-CA-6718-01 3 369855 369855 C T CHL1 Missense_Mutation p.S68L 0.14 tolerated(0.13) benign(0.002) TCGA-CA-6718-01 3 37105270 37105270 C T LRRFIP2 Missense_Mutation p.R571Q 0.08 deleterious(0.03) benign(0.079) TCGA-CA-6718-01 3 37150132 37150132 C T LRRFIP2 Missense_Mutation p.R218Q 0.22 tolerated(0.06) benign(0.014) TCGA-CA-6718-01 3 37340385 37340385 G T GOLGA4 Missense_Mutation p.E314D 0.30 probably_damaging(0.999) TCGA-CA-6718-01 3 37367858 37367858 G T GOLGA4 Missense_Mutation p.R1516I 0.31 benign(0.044) TCGA-CA-6718-01 3 37370553 37370553 G A GOLGA4 Missense_Mutation p.R2076Q 0.39 probably_damaging(0.999) TCGA-CA-6718-01 3 37381654 37381654 A G GOLGA4 Missense_Mutation p.N2161D 0.18 possibly_damaging(0.547) TCGA-CA-6718-01 3 38012956 38012956 T G CTDSPL Missense_Mutation p.F162C 0.24 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 3 38051200 38051200 C T PLCD1 Missense_Mutation p.E485K 0.31 tolerated(0.08) benign(0.425) TCGA-CA-6718-01 3 38103765 38103765 T G DLEC1 Missense_Mutation p.L260R 0.30 tolerated(0.09) benign(0.026) TCGA-CA-6718-01 3 38104264 38104264 G T DLEC1 Nonsense_Mutation p.E356* 0.26 TCGA-CA-6718-01 3 38141789 38141789 G A DLEC1 Missense_Mutation p.D913N 0.38 tolerated(0.55) benign(0.005) TCGA-CA-6718-01 3 38357049 38357049 G A SLC22A14 Missense_Mutation p.G460E 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6718-01 3 38598025 38598025 G T SCN5A Silent p.I1448I 0.19 TCGA-CA-6718-01 3 386278 386278 C A CHL1 Missense_Mutation p.S245Y 0.31 tolerated(0.5) possibly_damaging(0.462) TCGA-CA-6718-01 3 3886446 3886446 C T LRRN1 Missense_Mutation p.R41C 0.31 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 3 38949496 38949496 C A SCN11A Nonsense_Mutation p.E473* 0.37 TCGA-CA-6718-01 3 38951645 38951645 T G SCN11A Missense_Mutation p.N338T 0.29 deleterious(0.01) possibly_damaging(0.608) TCGA-CA-6718-01 3 40529055 40529055 A C ZNF619 Missense_Mutation p.S392R 0.17 tolerated(0.22) benign(0.083) TCGA-CA-6718-01 3 40529068 40529068 A C ZNF619 Missense_Mutation p.N396T 0.17 deleterious(0.04) benign(0.307) TCGA-CA-6718-01 3 41277233 41277233 G A CTNNB1 Missense_Mutation p.E568K 0.25 deleterious(0.03) possibly_damaging(0.636) TCGA-CA-6718-01 3 41278080 41278080 G A CTNNB1 Silent p.A652A 0.23 TCGA-CA-6718-01 3 42635941 42635941 C A SS18L2 Silent p.L58L 0.26 TCGA-CA-6718-01 3 42798589 42798589 C A CCDC13 Missense_Mutation p.K113N 0.33 deleterious(0) probably_damaging(0.928) TCGA-CA-6718-01 3 42798677 42798677 C T CCDC13 Missense_Mutation p.R84Q 0.29 tolerated(0.9) probably_damaging(1) TCGA-CA-6718-01 3 43756487 43756487 C A ABHD5 Missense_Mutation p.S237Y 0.28 deleterious(0) benign(0.189) TCGA-CA-6718-01 3 44611752 44611752 C A ZKSCAN7 Silent p.R384R 0.23 TCGA-CA-6718-01 3 44611789 44611789 C A ZKSCAN7 Missense_Mutation p.S396Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 3 44635761 44635761 G T ZNF660 Nonsense_Mutation p.E26* 0.23 TCGA-CA-6718-01 3 44636189 44636189 G A ZNF660 Silent p.G168G 0.23 TCGA-CA-6718-01 3 44762770 44762770 C T ZNF502 Missense_Mutation p.S154F 0.09 deleterious(0.01) benign(0.241) TCGA-CA-6718-01 3 44776374 44776374 G T ZNF501 Missense_Mutation p.R154I 0.35 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-CA-6718-01 3 44842991 44842991 C A KIF15 Missense_Mutation p.F424L 0.29 tolerated(0.62) benign(0.006) TCGA-CA-6718-01 3 45038695 45038695 T G EXOSC7 Missense_Mutation p.L124R 0.29 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 3 45867703 45867703 A C LZTFL1 3'UTR 0.31 TCGA-CA-6718-01 3 45943405 45943405 G A CCR9 3'UTR 0.30 TCGA-CA-6718-01 3 45944651 45944651 G T CCR9 3'UTR 0.33 TCGA-CA-6718-01 3 46308100 46308100 A G CCR3 3'UTR 0.38 TCGA-CA-6718-01 3 46415129 46415129 C A CCR5 Missense_Mutation p.L246I 0.32 tolerated(0.29) benign(0.045) TCGA-CA-6718-01 3 46415737 46415737 C T CCR5 3'UTR 0.28 TCGA-CA-6718-01 3 47165213 47165213 T C SETD2 Missense_Mutation p.T305A 0.26 tolerated_low_confidence(0.53) benign(0.002) TCGA-CA-6718-01 3 4725228 4725228 T G ITPR1 Missense_Mutation p.F1092C 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6718-01 3 47284623 47284623 C A KIF9 Missense_Mutation p.D543Y 0.15 deleterious(0) possibly_damaging(0.823) TCGA-CA-6718-01 3 4821245 4821245 G A ITPR1 Silent p.S2086S 0.30 TCGA-CA-6718-01 3 48219374 48219374 G A CDC25A Silent p.F218F 0.28 TCGA-CA-6718-01 3 4847886 4847886 C A ITPR1 Missense_Mutation p.H2388N 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6718-01 3 49160170 49160170 C A LAMB2 Nonsense_Mutation p.E1514* 0.09 TCGA-CA-6718-01 3 49227394 49227394 T G C3orf84 Intron 0.26 TCGA-CA-6718-01 3 49714395 49714395 C T APEH Missense_Mutation p.R313C 0.33 deleterious(0) possibly_damaging(0.836) TCGA-CA-6718-01 3 49721614 49721614 G A MST1 Silent p.Y675Y 0.27 TCGA-CA-6718-01 3 49736971 49736971 C T RNF123 Silent p.L279L 0.21 TCGA-CA-6718-01 3 49756397 49756397 C T AMIGO3 Missense_Mutation p.E168K 0.18 tolerated(0.51) benign(0.007) TCGA-CA-6718-01 3 49869449 49869449 C A TRAIP Missense_Mutation p.D313Y 0.36 deleterious(0) possibly_damaging(0.77) TCGA-CA-6718-01 3 5023171 5023171 T G BHLHE40 Missense_Mutation p.I118S 0.24 deleterious(0) possibly_damaging(0.644) TCGA-CA-6718-01 3 50308338 50308338 C T SEMA3B-AS1 5'Flank 0.13 TCGA-CA-6718-01 3 50598452 50598452 C T C3orf18 Missense_Mutation p.D102N 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 3 51273835 51273835 C T DOCK3 Silent p.Y659Y 0.28 TCGA-CA-6718-01 3 51431040 51431040 T G RBM15B Missense_Mutation p.M737R 0.15 deleterious(0) probably_damaging(0.941) TCGA-CA-6718-01 3 51457252 51457252 C T VPRBP Missense_Mutation p.A629T 0.27 tolerated(0.33) benign(0.104) TCGA-CA-6718-01 3 52939113 52939113 T G SFMBT1 3'UTR 0.31 TCGA-CA-6718-01 3 53321469 53321469 G T DCP1A 3'UTR 0.28 TCGA-CA-6718-01 3 53783458 53783458 G T CACNA1D Nonsense_Mutation p.E1180* 0.24 TCGA-CA-6718-01 3 53787685 53787685 G T CACNA1D Missense_Mutation p.L1274F 0.18 tolerated(0.16) probably_damaging(0.999) TCGA-CA-6718-01 3 53835137 53835137 G T CACNA1D Missense_Mutation p.R1718I 0.26 deleterious(0.03) benign(0.132) TCGA-CA-6718-01 3 56468681 56468681 C A ERC2 Missense_Mutation p.D119Y 0.18 deleterious(0) possibly_damaging(0.707) TCGA-CA-6718-01 3 56653471 56653471 C T CCDC66 Nonsense_Mutation p.R851* 0.27 TCGA-CA-6718-01 3 56656970 56656970 T G FAM208A 3'UTR 0.21 TCGA-CA-6718-01 3 57232308 57232308 G A HESX1 Missense_Mutation p.R159W 0.28 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 3 57344966 57344966 C A DNAH12 Nonsense_Mutation p.E278* 0.33 TCGA-CA-6718-01 3 57431827 57431827 C T DNAH12 Silent p.P1347P 0.41 TCGA-CA-6718-01 3 62262720 62262720 C A PTPRG Silent p.I1211I 0.33 TCGA-CA-6718-01 3 64619417 64619417 G A ADAMTS9 Silent p.N665N 0.17 TCGA-CA-6718-01 3 66396828 66396828 T C SLC25A26 Missense_Mutation p.L165S 0.26 deleterious(0) possibly_damaging(0.492) TCGA-CA-6718-01 3 67578595 67578595 C T SUCLG2 Silent p.A126A 0.24 TCGA-CA-6718-01 3 69088121 69088121 C A TMF1 Nonsense_Mutation p.E623* 0.23 TCGA-CA-6718-01 3 69088715 69088715 T C TMF1 Missense_Mutation p.Q605R 0.18 tolerated(0.26) benign(0.02) TCGA-CA-6718-01 3 69088798 69088798 C A TMF1 Missense_Mutation p.K577N 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 3 71026984 71026984 G A FOXP1 Missense_Mutation p.S450L 0.28 deleterious(0.04) possibly_damaging(0.614) TCGA-CA-6718-01 3 77645853 77645853 A C ROBO2 Missense_Mutation p.N952H 0.23 deleterious(0.01) possibly_damaging(0.703) TCGA-CA-6718-01 3 78649271 78649271 C A ROBO1 Nonsense_Mutation p.E1645* 0.21 TCGA-CA-6718-01 3 78711157 78711157 C T ROBO1 Missense_Mutation p.E692K 0.33 tolerated(0.07) probably_damaging(0.988) TCGA-CA-6718-01 3 8607232 8607232 G A LMCD1 Missense_Mutation p.E280K 0.25 deleterious(0.01) possibly_damaging(0.877) TCGA-CA-6718-01 3 88039886 88039886 T G HTR1F 5'UTR 0.37 TCGA-CA-6718-01 3 88041103 88041103 G T HTR1F 3'UTR 0.20 TCGA-CA-6718-01 3 8977636 8977636 T G RAD18 Missense_Mutation p.N270H 0.30 deleterious(0.01) probably_damaging(0.928) TCGA-CA-6718-01 3 9470604 9470604 C A SETD5 5'UTR 0.34 TCGA-CA-6718-01 3 97600026 97600026 G T CRYBG3 Missense_Mutation p.R424I 0.33 deleterious(0.01) benign(0.206) TCGA-CA-6718-01 3 97753722 97753722 G T GABRR3 RNA 0.24 TCGA-CA-6718-01 3 98002396 98002396 C A OR5H2 Missense_Mutation p.S222Y 0.27 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 3 9988136 9988136 G T PRRT3 Missense_Mutation p.F907L 0.24 tolerated(0.23) benign(0.016) TCGA-CA-6718-01 4 100140336 100140336 T G ADH6 5'UTR 0.53 TCGA-CA-6718-01 4 103533687 103533687 A G NFKB1 Missense_Mutation p.K839R 0.44 tolerated(0.55) benign(0.327) TCGA-CA-6718-01 4 103987604 103987604 G T SLC9B2 Missense_Mutation p.L51I 0.25 tolerated(0.09) benign(0.006) TCGA-CA-6718-01 4 104053939 104053939 G A CENPE Missense_Mutation p.R2279C 0.28 benign(0.431) TCGA-CA-6718-01 4 104061150 104061150 T C CENPE Silent p.E2000E 0.17 TCGA-CA-6718-01 4 10542127 10542127 C A CLNK Missense_Mutation p.R198I 0.20 tolerated(0.05) possibly_damaging(0.577) TCGA-CA-6718-01 4 10567679 10567679 C T CLNK Silent p.S82S 0.26 TCGA-CA-6718-01 4 106157964 106157964 T G TET2 Missense_Mutation p.H955Q 0.28 deleterious(0.01) possibly_damaging(0.617) TCGA-CA-6718-01 4 106370513 106370513 T G PPA2 Missense_Mutation p.K105N 0.26 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 106601085 106601085 C T ARHGEF38 3'UTR 0.36 TCGA-CA-6718-01 4 109680998 109680998 G T ETNPPL Missense_Mutation p.S81Y 0.21 deleterious(0) probably_damaging(0.987) TCGA-CA-6718-01 4 109745311 109745311 G A COL25A1 Intron 0.34 TCGA-CA-6718-01 4 113554371 113554371 A C C4orf21 5'UTR 0.27 TCGA-CA-6718-01 4 114275856 114275856 C T ANK2 Missense_Mutation p.R2028W 0.47 probably_damaging(0.969) TCGA-CA-6718-01 4 114381391 114381391 G T CAMK2D Silent p.I372I 0.29 TCGA-CA-6718-01 4 119064762 119064762 G T NDST3 Nonsense_Mutation p.E488* 0.11 TCGA-CA-6718-01 4 119979128 119979128 T A SYNPO2 3'UTR 0.26 TCGA-CA-6718-01 4 122725810 122725810 A C EXOSC9 Missense_Mutation p.N140H 0.32 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 4 122738046 122738046 A C EXOSC9 3'UTR 0.21 TCGA-CA-6718-01 4 123542198 123542198 C T IL21 5'UTR 0.38 TCGA-CA-6718-01 4 123663688 123663688 G A BBS12 Missense_Mutation p.R214Q 0.13 tolerated(0.4) benign(0) TCGA-CA-6718-01 4 123813960 123813960 T C NUDT6 3'UTR 0.16 TCGA-CA-6718-01 4 124324899 124324899 T G SPRY1 3'UTR 0.23 TCGA-CA-6718-01 4 126328250 126328250 T G FAT4 Missense_Mutation p.F1841L 0.34 probably_damaging(0.995) TCGA-CA-6718-01 4 126336508 126336508 T C FAT4 Silent p.G2130G 0.16 TCGA-CA-6718-01 4 126370783 126370783 G T FAT4 Missense_Mutation p.R2871I 0.13 probably_damaging(0.998) TCGA-CA-6718-01 4 126371505 126371505 T G FAT4 Missense_Mutation p.S3112A 0.44 probably_damaging(0.944) TCGA-CA-6718-01 4 126372036 126372036 A C FAT4 Missense_Mutation p.K3289Q 0.18 benign(0.021) TCGA-CA-6718-01 4 128689932 128689932 C A SLC25A31 Missense_Mutation p.T220N 0.29 tolerated(0.2) possibly_damaging(0.741) TCGA-CA-6718-01 4 128861039 128861039 A C MFSD8 Missense_Mutation p.L223V 0.41 tolerated(0.62) benign(0.006) TCGA-CA-6718-01 4 134111340 134111340 G A PCDH10 3'UTR 0.20 TCGA-CA-6718-01 4 135121651 135121651 C T PABPC4L Missense_Mutation p.R233Q 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-CA-6718-01 4 140282983 140282983 C T NAA15 Nonsense_Mutation p.R549* 0.25 TCGA-CA-6718-01 4 140640962 140640962 C A MAML3 Nonsense_Mutation p.E978* 0.23 TCGA-CA-6718-01 4 141832470 141832470 G A RNF150 Silent p.F342F 0.19 TCGA-CA-6718-01 4 144442706 144442706 G A SMARCA5 Missense_Mutation p.R126Q 0.19 tolerated(0.11) benign(0.071) TCGA-CA-6718-01 4 144920584 144920584 A G GYPB Missense_Mutation p.V52A 0.31 tolerated(0.27) possibly_damaging(0.822) TCGA-CA-6718-01 4 145573921 145573921 C A HHIP Missense_Mutation p.F148L 0.21 tolerated(0.13) benign(0.012) TCGA-CA-6718-01 4 145579987 145579987 G T HHIP Missense_Mutation p.R173I 0.40 tolerated(0.22) benign(0.222) TCGA-CA-6718-01 4 148554927 148554927 C T TMEM184C Silent p.I297I 0.28 TCGA-CA-6718-01 4 148564045 148564045 T G PRMT10 Missense_Mutation p.M698L 0.24 tolerated(0.08) benign(0.04) TCGA-CA-6718-01 4 149002415 149002415 A C NR3C2 3'UTR 0.19 TCGA-CA-6718-01 4 149357215 149357215 A G NR3C2 Silent p.S266S 0.21 TCGA-CA-6718-01 4 151773528 151773528 C T LRBA Missense_Mutation p.E1112K 0.51 tolerated_low_confidence(0.16) possibly_damaging(0.725) TCGA-CA-6718-01 4 153258980 153258980 C A FBXW7 Missense_Mutation p.D279Y 0.32 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 153691144 153691144 A C TIGD4 Missense_Mutation p.F338C 0.52 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 4 153793607 153793607 G A ARFIP1 Missense_Mutation p.G101D 0.50 tolerated(0.45) benign(0.003) TCGA-CA-6718-01 4 15504477 15504477 C T CC2D2A Silent p.I123I 0.18 TCGA-CA-6718-01 4 155156854 155156854 C A DCHS2 Nonsense_Mutation p.G2529* 0.47 TCGA-CA-6718-01 4 155215 155215 G T ZNF718 RNA 0.38 TCGA-CA-6718-01 4 155491927 155491927 G T FGB 3'UTR 0.38 TCGA-CA-6718-01 4 155720039 155720039 A C RBM46 Missense_Mutation p.N242T 0.43 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 4 156136730 156136730 C A NPY2R 3'UTR 0.39 TCGA-CA-6718-01 4 156289839 156289839 C A MAP9 Nonsense_Mutation p.E203* 0.33 TCGA-CA-6718-01 4 156825215 156825215 A T TDO2 Missense_Mutation p.K27N 0.42 tolerated(0.41) benign(0.003) TCGA-CA-6718-01 4 156835518 156835518 T C TDO2 Missense_Mutation p.F257S 0.13 tolerated(0.22) benign(0.143) TCGA-CA-6718-01 4 157999241 157999241 C A GLRB Missense_Mutation p.S22Y 0.39 deleterious_low_confidence(0.01) benign(0.133) TCGA-CA-6718-01 4 158257670 158257670 C A GRIA2 Missense_Mutation p.L539I 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-CA-6718-01 4 159569749 159569749 C A RXFP1 Missense_Mutation p.Q619K 0.27 tolerated(0.18) benign(0.003) TCGA-CA-6718-01 4 159624681 159624681 T G ETFDH Missense_Mutation p.I408S 0.25 deleterious(0.02) benign(0.002) TCGA-CA-6718-01 4 16193008 16193008 G A TAPT1 Silent p.L196L 0.33 TCGA-CA-6718-01 4 16193022 16193022 A G TAPT1 Missense_Mutation p.S192P 0.23 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 4 164271682 164271682 C A NPY5R Missense_Mutation p.S86Y 0.07 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 166946537 166946537 C A TLL1 Missense_Mutation p.S371Y 0.27 tolerated(0.12) benign(0.344) TCGA-CA-6718-01 4 173232775 173232775 A G GALNTL6 Silent p.E86E 0.33 TCGA-CA-6718-01 4 173804049 173804049 C A GALNTL6 Silent p.I344I 0.49 TCGA-CA-6718-01 4 17528442 17528442 G A CLRN2 Missense_Mutation p.G146S 0.25 tolerated(1) benign(0.051) TCGA-CA-6718-01 4 175564972 175564972 G T GLRA3 Missense_Mutation p.L454I 0.36 tolerated_low_confidence(0.34) benign(0.005) TCGA-CA-6718-01 4 175898763 175898763 G A ADAM29 Missense_Mutation p.R696Q 0.48 tolerated(0.29) benign(0.044) TCGA-CA-6718-01 4 177136782 177136782 G A ASB5 Missense_Mutation p.T320M 0.36 deleterious(0.03) probably_damaging(0.971) TCGA-CA-6718-01 4 17814693 17814693 A C NCAPG Missense_Mutation p.N157H 0.26 tolerated(0.06) possibly_damaging(0.848) TCGA-CA-6718-01 4 17841763 17841763 G T NCAPG Nonsense_Mutation p.E900* 0.24 TCGA-CA-6718-01 4 183714671 183714671 T C TENM3 Silent p.F2282F 0.36 TCGA-CA-6718-01 4 184633903 184633903 C A TRAPPC11 3'UTR 0.15 TCGA-CA-6718-01 4 185038965 185038965 C A ENPP6 Missense_Mutation p.D208Y 0.23 deleterious(0.01) possibly_damaging(0.827) TCGA-CA-6718-01 4 186267780 186267780 G T SNX25 Missense_Mutation p.K595N 0.35 deleterious(0) probably_damaging(0.969) TCGA-CA-6718-01 4 186299219 186299219 A C LRP2BP Intron 0.40 TCGA-CA-6718-01 4 186446182 186446182 T C PDLIM3 Silent p.K79K 0.38 TCGA-CA-6718-01 4 187510037 187510037 A T FAT1 Missense_Mutation p.N4492K 0.40 benign(0.06) TCGA-CA-6718-01 4 188924697 188924697 C T ZFP42 Missense_Mutation p.R246W 0.44 deleterious(0) possibly_damaging(0.474) TCGA-CA-6718-01 4 189026058 189026058 G A TRIML2 Missense_Mutation p.S23L 0.08 tolerated(1) benign(0.001) TCGA-CA-6718-01 4 189064851 189064851 C A TRIML1 Intron 0.42 TCGA-CA-6718-01 4 20487852 20487852 T G SLIT2 Missense_Mutation p.L190R 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-CA-6718-01 4 20493500 20493500 C A SLIT2 Missense_Mutation p.L298I 0.28 tolerated(0.15) probably_damaging(0.997) TCGA-CA-6718-01 4 20525414 20525414 C T SLIT2 Missense_Mutation p.R388W 0.16 deleterious(0) possibly_damaging(0.853) TCGA-CA-6718-01 4 20555580 20555580 T G SLIT2 Missense_Mutation p.F905C 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 20570571 20570571 C A SLIT2 Missense_Mutation p.S1011Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 4 2209930 2209930 C A POLN Missense_Mutation p.E166D 0.31 tolerated(0.07) possibly_damaging(0.678) TCGA-CA-6718-01 4 22749050 22749050 G T GBA3 Nonsense_Mutation p.E140* 0.33 TCGA-CA-6718-01 4 23797488 23797488 A G PPARGC1A Missense_Mutation p.F785S 0.26 deleterious(0) unknown(0) TCGA-CA-6718-01 4 24529578 24529578 T G DHX15 Missense_Mutation p.K786T 0.23 deleterious(0.05) benign(0.003) TCGA-CA-6718-01 4 25673270 25673270 T G SLC34A2 Silent p.P325P 0.40 TCGA-CA-6718-01 4 26483180 26483180 C A CCKAR 3'UTR 0.32 TCGA-CA-6718-01 4 265837 265837 C A ZNF732 Missense_Mutation p.R270I 0.21 tolerated(0.47) possibly_damaging(0.905) TCGA-CA-6718-01 4 2661552 2661552 G T FAM193A Missense_Mutation p.D215Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 4 26750037 26750037 C T TBC1D19 Missense_Mutation p.R442C 0.31 deleterious(0) probably_damaging(0.987) TCGA-CA-6718-01 4 3011390 3011390 G T GRK4 Missense_Mutation p.K184N 0.34 deleterious(0.03) probably_damaging(0.929) TCGA-CA-6718-01 4 3039145 3039145 C A GRK4 Missense_Mutation p.F484L 0.20 deleterious(0) benign(0.367) TCGA-CA-6718-01 4 30725113 30725113 A G PCDH7 Missense_Mutation p.D690G 0.22 tolerated(1) benign(0.022) TCGA-CA-6718-01 4 3430130 3430130 T G RGS12 Intron 0.50 TCGA-CA-6718-01 4 343995 343995 C A ZNF141 Intron 0.24 TCGA-CA-6718-01 4 36162092 36162092 C A ARAP2 Nonsense_Mutation p.E811* 0.18 TCGA-CA-6718-01 4 36230884 36230884 T C ARAP2 Silent p.P75P 0.10 TCGA-CA-6718-01 4 36295244 36295244 G A DTHD1 Missense_Mutation p.A314T 0.33 tolerated(0.89) benign(0) TCGA-CA-6718-01 4 37445481 37445481 G A KIAA1239 Missense_Mutation p.R624K 0.23 tolerated(0.14) benign(0.002) TCGA-CA-6718-01 4 3770016 3770016 G A ADRA2C 3'UTR 0.27 TCGA-CA-6718-01 4 37962073 37962073 C T PTTG2 Silent p.Y6Y 0.25 TCGA-CA-6718-01 4 38775804 38775804 C A TLR10 Nonsense_Mutation p.E470* 0.25 TCGA-CA-6718-01 4 38799088 38799088 A G TLR1 Silent p.N455N 0.26 TCGA-CA-6718-01 4 38830903 38830903 G A TLR6 Silent p.I64I 0.21 TCGA-CA-6718-01 4 39077636 39077636 T C KLHL5 Silent p.C191C 0.30 TCGA-CA-6718-01 4 39303965 39303965 C T RFC1 Missense_Mutation p.R824Q 0.09 tolerated(0.46) benign(0.002) TCGA-CA-6718-01 4 39458096 39458096 C T RPL9 Silent p.E107E 0.30 TCGA-CA-6718-01 4 39864995 39864995 A C PDS5A Missense_Mutation p.I909M 0.24 deleterious(0.02) probably_damaging(0.953) TCGA-CA-6718-01 4 40122539 40122539 A C N4BP2 Missense_Mutation p.Q936H 0.13 deleterious(0.01) benign(0.252) TCGA-CA-6718-01 4 40124813 40124813 A C N4BP2 Missense_Mutation p.K1422T 0.09 deleterious(0) possibly_damaging(0.884) TCGA-CA-6718-01 4 40245674 40245674 C A RHOH 3'UTR 0.36 TCGA-CA-6718-01 4 40245970 40245970 C A RHOH 3'UTR 0.42 TCGA-CA-6718-01 4 41263938 41263938 C T UCHL1 Missense_Mutation p.R153W 0.31 deleterious(0) probably_damaging(0.988) TCGA-CA-6718-01 4 41985293 41985293 A C DCAF4L1 3'UTR 0.25 TCGA-CA-6718-01 4 420162 420162 G T ABCA11P RNA 0.33 TCGA-CA-6718-01 4 4322775 4322775 T G ZBTB49 Missense_Mutation p.L677R 0.35 deleterious(0.03) benign(0.033) TCGA-CA-6718-01 4 435686 435686 C A ZNF721 Missense_Mutation p.R857I 0.13 tolerated(0.12) possibly_damaging(0.856) TCGA-CA-6718-01 4 436596 436596 C A ZNF721 Nonsense_Mutation p.E554* 0.38 TCGA-CA-6718-01 4 46388184 46388184 C A GABRA2 Nonsense_Mutation p.E32* 0.20 TCGA-CA-6718-01 4 47163450 47163450 G A GABRB1 Missense_Mutation p.R142Q 0.20 tolerated(0.08) probably_damaging(0.957) TCGA-CA-6718-01 4 47954716 47954716 C A CNGA1 Missense_Mutation p.M70I 0.33 tolerated_low_confidence(0.06) benign(0) TCGA-CA-6718-01 4 48075994 48075994 G T TXK Missense_Mutation p.L439I 0.27 deleterious(0.05) benign(0.143) TCGA-CA-6718-01 4 48114498 48114498 C T TXK Missense_Mutation p.R69Q 0.44 tolerated(0.06) benign(0.146) TCGA-CA-6718-01 4 48887480 48887480 C T OCIAD2 3'UTR 0.26 TCGA-CA-6718-01 4 515548 515548 T G PIGG Missense_Mutation p.L478V 0.29 tolerated(0.14) benign(0.165) TCGA-CA-6718-01 4 55955584 55955584 C A KDR Nonsense_Mutation p.E1121* 0.27 TCGA-CA-6718-01 4 55958788 55958788 C T KDR Missense_Mutation p.R1022Q 0.44 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 55958809 55958809 C T KDR Missense_Mutation p.G1015D 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 55964406 55964406 A G KDR Missense_Mutation p.S803P 0.20 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 4 55970907 55970907 C A KDR Missense_Mutation p.K630N 0.28 deleterious(0.04) benign(0.003) TCGA-CA-6718-01 4 55976856 55976856 C T KDR Silent p.A352A 0.30 TCGA-CA-6718-01 4 56316287 56316287 G T CLOCK Nonsense_Mutation p.S440* 0.41 TCGA-CA-6718-01 4 5633669 5633669 C A EVC2 Missense_Mutation p.D521Y 0.14 tolerated(0.26) probably_damaging(0.984) TCGA-CA-6718-01 4 5633755 5633755 G A EVC2 Missense_Mutation p.A492V 0.35 tolerated(0.1) probably_damaging(0.966) TCGA-CA-6718-01 4 56436021 56436021 G A PDCL2 Missense_Mutation p.R76W 0.34 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 4 56465313 56465313 T G NMU Nonstop_Mutation p.*175Yext*30 0.18 TCGA-CA-6718-01 4 56473623 56473623 T A NMU Missense_Mutation p.E97V 0.32 tolerated(0.1) benign(0.08) TCGA-CA-6718-01 4 57204784 57204784 G A AASDH Silent p.F1027F 0.21 TCGA-CA-6718-01 4 57344662 57344662 A C SRP72 Missense_Mutation p.K254Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 4 57352556 57352556 T G SRP72 Missense_Mutation p.I384M 0.30 deleterious(0.01) benign(0.03) TCGA-CA-6718-01 4 57796420 57796420 G A REST Missense_Mutation p.V466I 0.22 tolerated(0.11) benign(0.005) TCGA-CA-6718-01 4 57899453 57899453 G T IGFBP7 Missense_Mutation p.Q204K 0.26 tolerated(0.35) benign(0.042) TCGA-CA-6718-01 4 5806511 5806511 C T EVC Missense_Mutation p.S835L 0.43 tolerated(0.25) benign(0.009) TCGA-CA-6718-01 4 5812067 5812067 G T EVC Missense_Mutation p.E928D 0.28 deleterious(0.04) possibly_damaging(0.861) TCGA-CA-6718-01 4 5857912 5857912 C T CRMP1 Missense_Mutation p.D260N 0.24 deleterious(0.05) possibly_damaging(0.677) TCGA-CA-6718-01 4 5975408 5975408 A C C4orf50 Missense_Mutation p.F603C 0.43 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 4 6107636 6107636 C T JAKMIP1 Missense_Mutation p.R63Q 0.27 tolerated(0.12) benign(0.219) TCGA-CA-6718-01 4 6380244 6380244 C T PPP2R2C Missense_Mutation p.S75N 0.12 deleterious(0) probably_damaging(0.96) TCGA-CA-6718-01 4 65145760 65145760 C A TECRL 3'UTR 0.25 TCGA-CA-6718-01 4 65275041 65275041 G A TECRL Missense_Mutation p.S10L 0.12 tolerated_low_confidence(0.08) benign(0.133) TCGA-CA-6718-01 4 677529 677529 C T MFSD7 Missense_Mutation p.A288T 0.32 deleterious(0.03) possibly_damaging(0.743) TCGA-CA-6718-01 4 68380052 68380052 T G CENPC Missense_Mutation p.Y395S 0.34 tolerated(0.62) benign(0) TCGA-CA-6718-01 4 68458989 68458989 A G STAP1 Silent p.P247P 0.28 TCGA-CA-6718-01 4 68501201 68501201 T C UBA6 Silent p.V604V 0.45 TCGA-CA-6718-01 4 68547305 68547305 C A UBA6 Missense_Mutation p.K78N 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 68692995 68692995 G A TMPRSS11D Silent p.G312G 0.18 TCGA-CA-6718-01 4 68784907 68784907 T G TMPRSS11A Missense_Mutation p.I249L 0.35 tolerated(1) probably_damaging(0.995) TCGA-CA-6718-01 4 68934477 68934477 C A TMPRSS11F Missense_Mutation p.R205I 0.20 deleterious(0) possibly_damaging(0.83) TCGA-CA-6718-01 4 69056887 69056887 C A TMPRSS11BNL 3'UTR 0.29 TCGA-CA-6718-01 4 69078118 69078118 C T TMPRSS11BNL Missense_Mutation p.G29E 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 69093791 69093791 C A TMPRSS11B Splice_Site p.X364_splice 0.32 TCGA-CA-6718-01 4 69535816 69535816 C T UGT2B15 Missense_Mutation p.R174Q 0.28 deleterious(0.01) benign(0.298) TCGA-CA-6718-01 4 69683822 69683822 T G UGT2B10 Missense_Mutation p.F265C 0.28 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 4 69696579 69696579 G T UGT2B10 Missense_Mutation p.K523N 0.25 tolerated(0.05) benign(0.169) TCGA-CA-6718-01 4 69972894 69972894 T G UGT2B7 Missense_Mutation p.V335G 0.27 deleterious(0) probably_damaging(0.976) TCGA-CA-6718-01 4 70146620 70146620 G T UGT2B28 Missense_Mutation p.K134N 0.28 tolerated(0.06) benign(0.314) TCGA-CA-6718-01 4 70146649 70146649 G T UGT2B28 Missense_Mutation p.R144I 0.25 deleterious(0.02) possibly_damaging(0.739) TCGA-CA-6718-01 4 71099749 71099749 G A FDCSP Missense_Mutation p.D35N 0.21 tolerated_low_confidence(0.44) possibly_damaging(0.741) TCGA-CA-6718-01 4 71232569 71232569 G T SMR3A Missense_Mutation p.R88I 0.21 tolerated_low_confidence(0.48) unknown(0) TCGA-CA-6718-01 4 71495221 71495221 T G ENAM Missense_Mutation p.L2V 0.23 tolerated(0.06) benign(0.046) TCGA-CA-6718-01 4 71509866 71509866 C A ENAM Missense_Mutation p.P908H 0.23 deleterious(0) probably_damaging(0.967) TCGA-CA-6718-01 4 71522958 71522958 C A IGJ Missense_Mutation p.R80I 0.34 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 4 71555878 71555878 A C UTP3 3'UTR 0.35 TCGA-CA-6718-01 4 71555925 71555925 A C UTP3 3'UTR 0.39 TCGA-CA-6718-01 4 72631323 72631323 G T GC Missense_Mutation p.S119Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 4 73957454 73957454 G T ANKRD17 Missense_Mutation p.S1964Y 0.30 benign(0.144) TCGA-CA-6718-01 4 74302047 74302047 G T AFP Missense_Mutation p.R23I 0.28 deleterious(0.02) benign(0.037) TCGA-CA-6718-01 4 74352740 74352740 C T AFM Missense_Mutation p.T180I 0.37 tolerated(0.14) benign(0.091) TCGA-CA-6718-01 4 74354403 74354403 C A AFM Missense_Mutation p.S257Y 0.22 deleterious(0.04) probably_damaging(0.985) TCGA-CA-6718-01 4 7436546 7436546 A C PSAPL1 Missense_Mutation p.S21A 0.47 tolerated(0.99) benign(0.008) TCGA-CA-6718-01 4 74442129 74442129 T G RASSF6 Silent p.T344T 0.10 TCGA-CA-6718-01 4 74853041 74853041 C A PPBP Missense_Mutation p.R112I 0.34 tolerated(0.43) benign(0.064) TCGA-CA-6718-01 4 75178924 75178924 C T EPGN Intron 0.30 TCGA-CA-6718-01 4 75971568 75971568 T G PARM1 3'UTR 0.25 TCGA-CA-6718-01 4 76955811 76955811 A C CXCL11 3'UTR 0.28 TCGA-CA-6718-01 4 77020170 77020170 C A ART3 Intron 0.31 TCGA-CA-6718-01 4 77022153 77022153 C A ART3 Missense_Mutation p.N306K 0.33 tolerated_low_confidence(0.52) benign(0.001) TCGA-CA-6718-01 4 77177372 77177372 C A FAM47E Missense_Mutation p.S39Y 0.42 tolerated(0.12) possibly_damaging(0.61) TCGA-CA-6718-01 4 77244473 77244473 A C CCDC158 Missense_Mutation p.L1083V 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-CA-6718-01 4 78641565 78641565 C T CNOT6L 3'UTR 0.15 TCGA-CA-6718-01 4 78641777 78641777 G T CNOT6L Missense_Mutation p.F492L 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-CA-6718-01 4 79166457 79166457 A G FRAS1 Missense_Mutation p.H96R 0.29 benign(0.002) TCGA-CA-6718-01 4 79308550 79308550 G T FRAS1 Nonsense_Mutation p.E1224* 0.22 TCGA-CA-6718-01 4 83279907 83279907 T G HNRNPD Missense_Mutation p.K176Q 0.24 tolerated(0.05) probably_damaging(0.96) TCGA-CA-6718-01 4 83424247 83424247 T G TMEM150C Missense_Mutation p.E33D 0.27 tolerated(0.24) possibly_damaging(0.828) TCGA-CA-6718-01 4 83793075 83793075 C A SEC31A Intron 0.30 TCGA-CA-6718-01 4 83978173 83978173 A C COPS4 Missense_Mutation p.N169H 0.26 deleterious(0.01) possibly_damaging(0.495) TCGA-CA-6718-01 4 84026114 84026114 C A PLAC8 Nonsense_Mutation p.E60* 0.09 TCGA-CA-6718-01 4 84383730 84383730 A C FAM175A Silent p.T374T 0.25 TCGA-CA-6718-01 4 84465702 84465702 G A AGPAT9 Missense_Mutation p.R52Q 0.23 tolerated(0.37) benign(0.396) TCGA-CA-6718-01 4 8470041 8470041 G A TRMT44 Missense_Mutation p.R632Q 0.22 tolerated(0.71) benign(0.003) TCGA-CA-6718-01 4 88238312 88238312 C T HSD17B13 Missense_Mutation p.D128N 0.23 tolerated(0.13) possibly_damaging(0.77) TCGA-CA-6718-01 4 88412828 88412828 C A SPARCL1 Missense_Mutation p.E411D 0.20 tolerated(0.14) benign(0.011) TCGA-CA-6718-01 4 88535987 88535987 G A DSPP Missense_Mutation p.D725N 0.21 unknown(0) TCGA-CA-6718-01 4 88537398 88537398 G A DSPP Missense_Mutation p.S1195N 0.30 unknown(0) TCGA-CA-6718-01 4 88766604 88766604 A C MEPE Missense_Mutation p.K195T 0.27 tolerated(0.06) probably_damaging(0.988) TCGA-CA-6718-01 4 89183672 89183673 - T PPM1K 3'UTR 0.25 TCGA-CA-6718-01 4 89311819 89311819 C A HERC6 Nonsense_Mutation p.S151* 0.20 TCGA-CA-6718-01 4 89326743 89326743 A G HERC6 Missense_Mutation p.T418A 0.17 deleterious(0.02) possibly_damaging(0.837) TCGA-CA-6718-01 4 89859265 89859265 T C FAM13A Missense_Mutation p.N245D 0.30 tolerated(0.37) benign(0.034) TCGA-CA-6718-01 4 90856187 90856187 T G MMRN1 Silent p.T452T 0.32 TCGA-CA-6718-01 4 90874147 90874147 G T MMRN1 Splice_Site p.X1089_splice 0.35 TCGA-CA-6718-01 4 95170888 95170888 T C SMARCAD1 Silent p.F263F 0.08 TCGA-CA-6718-01 4 95174040 95174040 A C SMARCAD1 Missense_Mutation p.K388T 0.27 deleterious(0.02) possibly_damaging(0.649) TCGA-CA-6718-01 4 95210789 95210789 T G SMARCAD1 3'UTR 0.18 TCGA-CA-6718-01 4 96127795 96127795 G A UNC5C Missense_Mutation p.A629V 0.12 tolerated(0.51) benign(0.003) TCGA-CA-6718-01 4 96762530 96762530 G T PDHA2 3'UTR 0.19 TCGA-CA-6718-01 4 9828063 9828063 G A SLC2A9 Silent p.I527I 0.26 TCGA-CA-6718-01 4 99969962 99969962 G A METAP1 Missense_Mutation p.R289Q 0.39 deleterious(0) benign(0.393) TCGA-CA-6718-01 4 99997935 99997935 G A ADH5 Missense_Mutation p.P162S 0.17 tolerated(0.17) benign(0.001) TCGA-CA-6718-01 5 102285290 102285290 C A PAM Silent p.V231V 0.24 TCGA-CA-6718-01 5 102286446 102286446 T G PAM Missense_Mutation p.V276G 0.16 deleterious(0) benign(0.281) TCGA-CA-6718-01 5 102423591 102423591 T G GIN1 3'UTR 0.38 TCGA-CA-6718-01 5 102613587 102613587 T C C5orf30 3'UTR 0.27 TCGA-CA-6718-01 5 102895015 102895015 A G NUDT12 Missense_Mutation p.F121L 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-CA-6718-01 5 108380481 108380481 T G FER Missense_Mutation p.F605C 0.32 deleterious(0) probably_damaging(0.989) TCGA-CA-6718-01 5 109124646 109124646 C T MAN2A1 Missense_Mutation p.S591L 0.29 deleterious(0) possibly_damaging(0.808) TCGA-CA-6718-01 5 109978042 109978042 G T TMEM232 Silent p.I52I 0.27 TCGA-CA-6718-01 5 110454715 110454715 A T WDR36 Missense_Mutation p.I657L 0.28 deleterious(0.02) benign(0.021) TCGA-CA-6718-01 5 110462474 110462474 G T WDR36 Nonsense_Mutation p.E917* 0.25 TCGA-CA-6718-01 5 111091561 111091561 G A NREP Intron 0.50 TCGA-CA-6718-01 5 112174297 112174297 C T APC Silent p.A1002A 0.50 TCGA-CA-6718-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.22 TCGA-CA-6718-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.21 TCGA-CA-6718-01 5 112227458 112227458 C T ZRSR1 Missense_Mutation p.A41V 0.27 deleterious(0) possibly_damaging(0.483) TCGA-CA-6718-01 5 112874797 112874797 G T YTHDC2 Nonsense_Mutation p.E377* 0.23 TCGA-CA-6718-01 5 11411724 11411724 G A CTNND2 Silent p.L121L 0.33 TCGA-CA-6718-01 5 115249177 115249177 C A AP3S1 Missense_Mutation p.S191Y 0.11 deleterious_low_confidence(0.01) benign(0.003) TCGA-CA-6718-01 5 118487659 118487659 C A DMXL1 Missense_Mutation p.L1544I 0.29 deleterious(0) possibly_damaging(0.795) TCGA-CA-6718-01 5 118533608 118533608 C A DMXL1 Missense_Mutation p.L2568I 0.24 tolerated(0.09) probably_damaging(0.998) TCGA-CA-6718-01 5 120021786 120021786 T G PRR16 Silent p.A76A 0.24 TCGA-CA-6718-01 5 1212500 1212500 C T SLC6A19 Silent p.S188S 0.32 TCGA-CA-6718-01 5 121489200 121489200 G T ZNF474 3'UTR 0.22 TCGA-CA-6718-01 5 1221851 1221851 G A SLC6A19 Silent p.P579P 0.36 TCGA-CA-6718-01 5 123983615 123983615 T C ZNF608 Missense_Mutation p.D821G 0.26 tolerated(0.16) possibly_damaging(0.478) TCGA-CA-6718-01 5 125885902 125885902 G T ALDH7A1 Silent p.I467I 0.41 TCGA-CA-6718-01 5 126883688 126883688 C T PRRC1 Intron 0.27 TCGA-CA-6718-01 5 127448571 127448571 G T SLC12A2 Silent p.T274T 0.22 TCGA-CA-6718-01 5 127516640 127516640 G A SLC12A2 Missense_Mutation p.V1056I 0.27 tolerated(0.26) possibly_damaging(0.814) TCGA-CA-6718-01 5 127627299 127627299 A G FBN2 Missense_Mutation p.C2072R 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 5 127640772 127640772 G A FBN2 Missense_Mutation p.R1893C 0.28 tolerated(0.06) probably_damaging(0.996) TCGA-CA-6718-01 5 1282594 1282594 G T TERT Silent p.L573L 0.24 TCGA-CA-6718-01 5 128351605 128351605 C T SLC27A6 Missense_Mutation p.R333C 0.33 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 5 129521409 129521409 C T CHSY3 Silent p.F858F 0.23 TCGA-CA-6718-01 5 130726772 130726772 G A CDC42SE2 Silent p.T81T 0.30 TCGA-CA-6718-01 5 130788793 130788793 G A RAPGEF6 Nonsense_Mutation p.R1052* 0.19 TCGA-CA-6718-01 5 131326570 131326570 A G ACSL6 Missense_Mutation p.F121L 0.29 deleterious(0.05) probably_damaging(0.998) TCGA-CA-6718-01 5 131719911 131719911 G A SLC22A5 Silent p.S190S 0.21 TCGA-CA-6718-01 5 131951755 131951755 G T RAD50 Nonsense_Mutation p.E1033* 0.34 TCGA-CA-6718-01 5 132151953 132151953 A C SOWAHA 3'UTR 0.18 TCGA-CA-6718-01 5 132197824 132197824 A C GDF9 Silent p.A274A 0.08 TCGA-CA-6718-01 5 132270564 132270564 A C AFF4 Missense_Mutation p.F65V 0.25 tolerated(0.09) benign(0.003) TCGA-CA-6718-01 5 132534856 132534856 T G FSTL4 Missense_Mutation p.Q820H 0.25 tolerated(0.08) probably_damaging(0.933) TCGA-CA-6718-01 5 134191693 134191693 T G C5orf24 3'UTR 0.25 TCGA-CA-6718-01 5 134195223 134195223 G T C5orf24 3'UTR 0.31 TCGA-CA-6718-01 5 134331971 134331971 G T CATSPER3 Missense_Mutation p.E87D 0.19 tolerated(0.65) benign(0.217) TCGA-CA-6718-01 5 135499038 135499038 A G SMAD5 Missense_Mutation p.N245D 0.29 tolerated(0.74) benign(0.062) TCGA-CA-6718-01 5 135508200 135508200 G A SMAD5 Missense_Mutation p.E285K 0.20 deleterious(0.03) possibly_damaging(0.556) TCGA-CA-6718-01 5 137244586 137244586 C A PKD2L2 Missense_Mutation p.L427I 0.31 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 5 13737588 13737588 C A DNAH5 Missense_Mutation p.R3743I 0.13 possibly_damaging(0.639) TCGA-CA-6718-01 5 137522048 137522048 T G KIF20A Silent p.A761A 0.31 TCGA-CA-6718-01 5 137677007 137677007 C A FAM53C 5'UTR 0.20 TCGA-CA-6718-01 5 137903159 137903159 T G HSPA9 Missense_Mutation p.K234T 0.15 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-CA-6718-01 5 138118906 138118906 A G CTNNA1 Missense_Mutation p.N49S 0.34 tolerated(0.61) benign(0.023) TCGA-CA-6718-01 5 138240092 138240092 C T CTNNA1 Nonsense_Mutation p.R451* 0.52 TCGA-CA-6718-01 5 138665040 138665040 C A MATR3 Missense_Mutation p.L834M 0.19 tolerated(0.15) benign(0.079) TCGA-CA-6718-01 5 13867948 13867948 C T DNAH5 Missense_Mutation p.E1330K 0.22 benign(0.292) TCGA-CA-6718-01 5 13885331 13885331 C A DNAH5 Missense_Mutation p.R917I 0.31 benign(0.308) TCGA-CA-6718-01 5 13920716 13920716 C T DNAH5 Missense_Mutation p.R224Q 0.28 benign(0) TCGA-CA-6718-01 5 139507730 139507730 T G IGIP 5'UTR 0.32 TCGA-CA-6718-01 5 140011725 140011725 T G CD14 Missense_Mutation p.N282H 0.44 deleterious(0) probably_damaging(0.962) TCGA-CA-6718-01 5 140051267 140051267 G A DND1 Missense_Mutation p.R225C 0.15 deleterious(0) benign(0.043) TCGA-CA-6718-01 5 140181988 140181988 G T PCDHA3 Missense_Mutation p.K402N 0.24 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-CA-6718-01 5 140201766 140201766 G T PCDHA5 Nonsense_Mutation p.E136* 0.24 TCGA-CA-6718-01 5 140208267 140208267 G T PCDHA6 Missense_Mutation p.K197N 0.38 deleterious_low_confidence(0.02) benign(0.246) TCGA-CA-6718-01 5 140214880 140214880 G T PCDHA7 Silent p.V304V 0.20 TCGA-CA-6718-01 5 140222014 140222014 G A PCDHA8 Missense_Mutation p.A370T 0.31 tolerated_low_confidence(0.08) benign(0.339) TCGA-CA-6718-01 5 140249610 140249610 G T PCDHA11 Missense_Mutation p.D308Y 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-CA-6718-01 5 140306544 140306544 G A PCDHAC1 Missense_Mutation p.E23K 0.26 tolerated(0.14) benign(0.386) TCGA-CA-6718-01 5 140475200 140475200 A G PCDHB2 Missense_Mutation p.N276D 0.44 tolerated_low_confidence(0.14) possibly_damaging(0.882) TCGA-CA-6718-01 5 140501644 140501644 T C PCDHB4 Silent p.L22L 0.20 TCGA-CA-6718-01 5 140501675 140501675 A G PCDHB4 Missense_Mutation p.Y32C 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6718-01 5 140501935 140501935 G T PCDHB4 Nonsense_Mutation p.E119* 0.41 TCGA-CA-6718-01 5 140515261 140515261 G A PCDHB5 Missense_Mutation p.G82D 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CA-6718-01 5 140531013 140531013 G T PCDHB6 Missense_Mutation p.R392I 0.21 deleterious(0) benign(0.256) TCGA-CA-6718-01 5 140563061 140563061 C T PCDHB16 Silent p.F309F 0.19 TCGA-CA-6718-01 5 140574500 140574500 G T PCDHB10 Missense_Mutation p.R792L 0.21 tolerated_low_confidence(0.08) benign(0.033) TCGA-CA-6718-01 5 140588602 140588602 C T PCDHB12 Silent p.S41S 0.30 TCGA-CA-6718-01 5 140625881 140625881 G A PCDHB15 Silent p.A245A 0.29 TCGA-CA-6718-01 5 140682571 140682571 C A SLC25A2 Nonsense_Mutation p.E288* 0.21 TCGA-CA-6718-01 5 140711919 140711919 C T PCDHGA1 Silent p.N556N 0.26 TCGA-CA-6718-01 5 140720932 140720932 C T PCDHGA2 Silent p.L798L 0.29 TCGA-CA-6718-01 5 140724596 140724596 G T PCDHGA3 Missense_Mutation p.K332N 0.29 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-CA-6718-01 5 140750183 140750183 C A PCDHGB3 Missense_Mutation p.F74L 0.40 tolerated(0.44) benign(0.007) TCGA-CA-6718-01 5 140769309 140769309 C T PCDHGB4 Missense_Mutation p.R620C 0.33 deleterious(0.01) possibly_damaging(0.839) TCGA-CA-6718-01 5 140790022 140790022 T G PCDHGB6 Silent p.S751S 0.26 TCGA-CA-6718-01 5 140866889 140866889 C T PCDHGC4 Missense_Mutation p.R717C 0.25 deleterious(0) probably_damaging(0.943) TCGA-CA-6718-01 5 140870416 140870416 C T PCDHGC5 Nonsense_Mutation p.R537* 0.17 TCGA-CA-6718-01 5 141381630 141381630 C A GNPDA1 Missense_Mutation p.E278D 0.31 tolerated_low_confidence(0.08) benign(0.001) TCGA-CA-6718-01 5 14465725 14465725 T G TRIO Missense_Mutation p.I1913M 0.32 benign(0.019) TCGA-CA-6718-01 5 147795508 147795508 C T FBXO38 Nonsense_Mutation p.R428* 0.20 TCGA-CA-6718-01 5 149457758 149457758 G A CSF1R Nonsense_Mutation p.R216* 0.23 TCGA-CA-6718-01 5 149509503 149509503 G A PDGFRB Silent p.L466L 0.22 TCGA-CA-6718-01 5 150512099 150512099 G T ANXA6 Missense_Mutation p.P225Q 0.22 tolerated(0.16) possibly_damaging(0.789) TCGA-CA-6718-01 5 151045990 151045990 C A SPARC Missense_Mutation p.K222N 0.16 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 5 151304060 151304060 G T GLRA1 Missense_Mutation p.F17L 0.33 tolerated_low_confidence(0.87) benign(0.002) TCGA-CA-6718-01 5 153026522 153026522 C A GRIA1 Silent p.I95I 0.21 TCGA-CA-6718-01 5 153433033 153433033 C A MFAP3 Silent p.I283I 0.17 TCGA-CA-6718-01 5 153433894 153433894 C A MFAP3 3'UTR 0.24 TCGA-CA-6718-01 5 153433958 153433958 T G MFAP3 3'UTR 0.26 TCGA-CA-6718-01 5 153835563 153835563 C T SAP30L Missense_Mutation p.S176L 0.36 tolerated(0.38) benign(0.001) TCGA-CA-6718-01 5 154346429 154346429 G A MRPL22 Missense_Mutation p.R198H 0.29 tolerated(0.06) probably_damaging(0.953) TCGA-CA-6718-01 5 154393792 154393792 G T KIF4B Nonsense_Mutation p.E125* 0.25 TCGA-CA-6718-01 5 154395105 154395105 A T KIF4B Missense_Mutation p.K562N 0.32 deleterious(0.01) probably_damaging(0.938) TCGA-CA-6718-01 5 156589678 156589678 T C FAM71B Missense_Mutation p.K533R 0.27 tolerated(1) benign(0.026) TCGA-CA-6718-01 5 156593013 156593013 T G FAM71B Missense_Mutation p.K56T 0.27 deleterious(0) probably_damaging(0.993) TCGA-CA-6718-01 5 156770141 156770141 A C FNDC9 Missense_Mutation p.F135C 0.21 tolerated(0.07) probably_damaging(0.935) TCGA-CA-6718-01 5 156916114 156916114 C T ADAM19 Missense_Mutation p.R774Q 0.23 tolerated(0.08) probably_damaging(0.993) TCGA-CA-6718-01 5 158250270 158250270 T C EBF1 Missense_Mutation p.N231S 0.22 tolerated(0.06) possibly_damaging(0.552) TCGA-CA-6718-01 5 158526498 158526498 T G EBF1 5'UTR 0.25 TCGA-CA-6718-01 5 158634800 158634800 C T RNF145 Intron 0.30 TCGA-CA-6718-01 5 15937046 15937046 C T FBXL7 Silent p.I409I 0.30 TCGA-CA-6718-01 5 159519582 159519582 C T PWWP2A Missense_Mutation p.R692H 0.34 deleterious(0.03) benign(0.115) TCGA-CA-6718-01 5 159520033 159520033 C A PWWP2A Nonsense_Mutation p.E542* 0.28 TCGA-CA-6718-01 5 159520204 159520204 C A PWWP2A Nonsense_Mutation p.E485* 0.31 TCGA-CA-6718-01 5 159640801 159640801 G T FABP6 Missense_Mutation p.R37I 0.26 deleterious_low_confidence(0.03) benign(0.003) TCGA-CA-6718-01 5 160061495 160061495 C T ATP10B Missense_Mutation p.R416Q 0.33 deleterious(0.01) probably_damaging(0.975) TCGA-CA-6718-01 5 161292783 161292783 G T GABRA1 Missense_Mutation p.D82Y 0.30 deleterious(0) possibly_damaging(0.773) TCGA-CA-6718-01 5 1632857 1632857 T G RP11-43F13.1 RNA 0.10 TCGA-CA-6718-01 5 167671461 167671461 C T TENM2 Nonsense_Mutation p.R1853* 0.22 TCGA-CA-6718-01 5 167915619 167915619 A C RARS Missense_Mutation p.K20Q 0.24 tolerated(0.58) benign(0.002) TCGA-CA-6718-01 5 167927701 167927701 C T RARS Missense_Mutation p.L310F 0.29 deleterious(0.04) probably_damaging(0.928) TCGA-CA-6718-01 5 168123325 168123325 G A SLIT3 Silent p.Y1018Y 0.23 TCGA-CA-6718-01 5 169309998 169309998 A G FAM196B Missense_Mutation p.V302A 0.50 tolerated(0.45) benign(0.004) TCGA-CA-6718-01 5 169310363 169310363 A G FAM196B Silent p.N180N 0.14 TCGA-CA-6718-01 5 169435519 169435519 C A DOCK2 Missense_Mutation p.H1031N 0.18 deleterious(0.01) benign(0.168) TCGA-CA-6718-01 5 169454876 169454876 G A DOCK2 Missense_Mutation p.E1131K 0.21 deleterious(0.02) possibly_damaging(0.899) TCGA-CA-6718-01 5 169535558 169535558 C A FOXI1 Missense_Mutation p.F360L 0.33 tolerated(0.16) probably_damaging(0.986) TCGA-CA-6718-01 5 170160885 170160885 C A KCNIP1 Missense_Mutation p.L207I 0.34 tolerated(1) benign(0.006) TCGA-CA-6718-01 5 170833403 170833403 G A NPM1 Intron 0.29 TCGA-CA-6718-01 5 171326006 171326006 A G FBXW11 Splice_Site p.X217_splice 0.32 TCGA-CA-6718-01 5 17276937 17276937 A C BASP1 3'UTR 0.30 TCGA-CA-6718-01 5 175112483 175112483 C T HRH2 Missense_Mutation p.S383L 0.31 tolerated_low_confidence(0.06) benign(0.001) TCGA-CA-6718-01 5 175112517 175112517 C T HRH2 Silent p.C394C 0.23 TCGA-CA-6718-01 5 175536140 175536140 C T FAM153B Nonsense_Mutation p.Q245* 0.15 TCGA-CA-6718-01 5 175824972 175824972 C T CLTB Missense_Mutation p.R104H 0.30 deleterious(0.05) probably_damaging(0.97) TCGA-CA-6718-01 5 175957655 175957655 T C RNF44 Silent p.P243P 0.09 TCGA-CA-6718-01 5 176965907 176965907 G A FAM193B Missense_Mutation p.A151V 0.38 tolerated(0.11) probably_damaging(0.956) TCGA-CA-6718-01 5 178050267 178050267 C A CLK4 Nonsense_Mutation p.E51* 0.31 TCGA-CA-6718-01 5 178140463 178140463 T G ZNF354A Missense_Mutation p.K139T 0.32 tolerated(0.08) benign(0.044) TCGA-CA-6718-01 5 178293318 178293318 G T ZNF354B Missense_Mutation p.R36I 0.22 deleterious(0) probably_damaging(0.962) TCGA-CA-6718-01 5 178358784 178358784 C A ZFP2 Missense_Mutation p.P157H 0.38 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 5 178358905 178358905 G T ZFP2 Missense_Mutation p.K197N 0.27 tolerated(0.08) possibly_damaging(0.884) TCGA-CA-6718-01 5 178359871 178359871 T G ZFP2 3'UTR 0.37 TCGA-CA-6718-01 5 178391686 178391686 C A ZNF454 Missense_Mutation p.S94Y 0.36 tolerated(1) benign(0.166) TCGA-CA-6718-01 5 178460040 178460040 G A ZNF879 Missense_Mutation p.R364Q 0.37 deleterious(0.05) probably_damaging(0.977) TCGA-CA-6718-01 5 178460124 178460124 G T ZNF879 Missense_Mutation p.R392I 0.33 tolerated(0.18) probably_damaging(1) TCGA-CA-6718-01 5 178505830 178505830 G A ZNF354C Missense_Mutation p.E133K 0.29 tolerated(0.92) benign(0) TCGA-CA-6718-01 5 178505972 178505972 G A ZNF354C Missense_Mutation p.S180N 0.31 tolerated(0.42) benign(0.002) TCGA-CA-6718-01 5 179070471 179070471 C A C5orf60 Nonsense_Mutation p.E101* 0.37 TCGA-CA-6718-01 5 179070480 179070480 G T C5orf60 Missense_Mutation p.L98I 0.26 tolerated(0.14) possibly_damaging(0.801) TCGA-CA-6718-01 5 179688689 179688689 G T MAPK9 Missense_Mutation p.H149N 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 5 180276501 180276501 C A ZFP62 Missense_Mutation p.R665I 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-CA-6718-01 5 180276837 180276837 C T ZFP62 Missense_Mutation p.R553Q 0.34 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 5 180687422 180687422 A C TRIM52 Missense_Mutation p.D131E 0.25 tolerated(0.22) benign(0.005) TCGA-CA-6718-01 5 19473324 19473324 G T CDH18 3'UTR 0.21 TCGA-CA-6718-01 5 23524567 23524567 G A PRDM9 Missense_Mutation p.D359N 0.29 tolerated(0.09) benign(0.137) TCGA-CA-6718-01 5 23527508 23527508 A G PRDM9 Missense_Mutation p.T771A 0.34 deleterious(0.04) possibly_damaging(0.701) TCGA-CA-6718-01 5 24488074 24488074 C A CDH10 Missense_Mutation p.D689Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 5 24498546 24498546 G T CDH10 Missense_Mutation p.F492L 0.21 tolerated(0.67) benign(0.015) TCGA-CA-6718-01 5 251119 251119 C A SDHA Missense_Mutation p.H522N 0.25 tolerated_low_confidence(0.46) benign(0.044) TCGA-CA-6718-01 5 26906122 26906122 T C CDH9 Missense_Mutation p.T253A 0.28 deleterious(0) benign(0.108) TCGA-CA-6718-01 5 26906941 26906941 G T CDH9 Missense_Mutation p.S177Y 0.14 tolerated(0.19) possibly_damaging(0.665) TCGA-CA-6718-01 5 31267760 31267760 C A CDH6 Missense_Mutation p.F60L 0.28 tolerated(0.08) probably_damaging(0.981) TCGA-CA-6718-01 5 31313499 31313499 C T CDH6 Missense_Mutation p.S443L 0.12 tolerated(0.41) benign(0.008) TCGA-CA-6718-01 5 31449442 31449442 G A DROSHA Missense_Mutation p.R923W 0.23 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 5 31553072 31553072 T G C5orf22 3'UTR 0.19 TCGA-CA-6718-01 5 32230401 32230401 C A MTMR12 Missense_Mutation p.R576I 0.20 deleterious(0) probably_damaging(0.962) TCGA-CA-6718-01 5 32790212 32790212 A C NPR3 3'UTR 0.31 TCGA-CA-6718-01 5 33881335 33881335 G T ADAMTS12 Silent p.L126L 0.18 TCGA-CA-6718-01 5 34850335 34850335 C T TTC23L Missense_Mutation p.R101W 0.27 deleterious(0) probably_damaging(0.992) TCGA-CA-6718-01 5 34863055 34863055 G T TTC23L Missense_Mutation p.L144F 0.21 tolerated(0.06) probably_damaging(0.945) TCGA-CA-6718-01 5 35644523 35644523 G A SPEF2 Missense_Mutation p.E161K 0.33 tolerated(0.48) possibly_damaging(0.67) TCGA-CA-6718-01 5 35771787 35771787 C T SPEF2 Missense_Mutation p.P1293L 0.24 tolerated(0.06) benign(0.001) TCGA-CA-6718-01 5 35776421 35776421 T G SPEF2 Missense_Mutation p.L1381V 0.23 deleterious(0) possibly_damaging(0.837) TCGA-CA-6718-01 5 35867456 35867456 G T IL7R Missense_Mutation p.E90D 0.20 tolerated(1) benign(0.001) TCGA-CA-6718-01 5 35871259 35871259 A C IL7R Missense_Mutation p.K161Q 0.25 deleterious(0.04) possibly_damaging(0.691) TCGA-CA-6718-01 5 36257650 36257650 T G RANBP3L Missense_Mutation p.Q251H 0.18 deleterious(0.05) possibly_damaging(0.873) TCGA-CA-6718-01 5 36686223 36686223 T C SLC1A3 Missense_Mutation p.V494A 0.29 deleterious(0) possibly_damaging(0.73) TCGA-CA-6718-01 5 37010251 37010251 T C NIPBL Missense_Mutation p.L1495S 0.27 deleterious(0) probably_damaging(0.959) TCGA-CA-6718-01 5 37183791 37183791 T C C5orf42 Missense_Mutation p.N1498D 0.24 tolerated(0.42) benign(0.009) TCGA-CA-6718-01 5 37224370 37224370 C A C5orf42 Nonsense_Mutation p.E856* 0.25 TCGA-CA-6718-01 5 37337982 37337982 C A NUP155 Missense_Mutation p.D429Y 0.31 deleterious(0) possibly_damaging(0.84) TCGA-CA-6718-01 5 38427314 38427314 G A EGFLAM Missense_Mutation p.E672K 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-CA-6718-01 5 38481905 38481905 C T LIFR Missense_Mutation p.R1029K 0.26 tolerated(0.1) possibly_damaging(0.888) TCGA-CA-6718-01 5 38506680 38506680 A C LIFR Missense_Mutation p.I349S 0.29 deleterious(0) possibly_damaging(0.897) TCGA-CA-6718-01 5 38883954 38883954 A G OSMR Missense_Mutation p.I148M 0.22 tolerated(0.1) benign(0.018) TCGA-CA-6718-01 5 39311419 39311419 G A C9 Missense_Mutation p.R311C 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 5 40841702 40841702 A C CARD6 Missense_Mutation p.Q73P 0.20 deleterious(0.01) possibly_damaging(0.819) TCGA-CA-6718-01 5 40934493 40934493 G T C7 Nonsense_Mutation p.E69* 0.34 TCGA-CA-6718-01 5 40980002 40980002 A C C7 Missense_Mutation p.K781Q 0.10 tolerated(0.19) benign(0.008) TCGA-CA-6718-01 5 41052679 41052679 G T MROH2B Missense_Mutation p.S373Y 0.35 deleterious(0.01) benign(0.062) TCGA-CA-6718-01 5 41382317 41382317 G T PLCXD3 Missense_Mutation p.F141L 0.24 tolerated(0.66) benign(0.005) TCGA-CA-6718-01 5 41382447 41382447 C T PLCXD3 Missense_Mutation p.R98Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 5 428102 428102 G A AHRR Missense_Mutation p.A319T 0.32 tolerated(0.26) benign(0.024) TCGA-CA-6718-01 5 43040028 43040028 A G ANXA2R Missense_Mutation p.Y41H 0.38 deleterious(0) probably_damaging(0.992) TCGA-CA-6718-01 5 43280118 43280118 G T NIM1K Nonsense_Mutation p.E200* 0.28 TCGA-CA-6718-01 5 43293049 43293049 T G HMGCS1 Missense_Mutation p.S404R 0.32 tolerated(0.07) possibly_damaging(0.748) TCGA-CA-6718-01 5 43381944 43381944 G T CCL28 3'UTR 0.26 TCGA-CA-6718-01 5 44388701 44388701 G T FGF10 Missense_Mutation p.F28L 0.14 tolerated(0.91) benign(0) TCGA-CA-6718-01 5 50137863 50137863 G T PARP8 Missense_Mutation p.E842D 0.28 tolerated(0.08) possibly_damaging(0.723) TCGA-CA-6718-01 5 52781787 52781787 C T FST Missense_Mutation p.S320L 0.36 tolerated(0.07) benign(0.003) TCGA-CA-6718-01 5 53815839 53815839 G T SNX18 3'UTR 0.30 TCGA-CA-6718-01 5 53839415 53839415 G T SNX18 3'UTR 0.36 TCGA-CA-6718-01 5 54275225 54275225 C T ESM1 Missense_Mutation p.E164K 0.29 tolerated(0.05) benign(0.255) TCGA-CA-6718-01 5 54948547 54948547 A C SLC38A9 Missense_Mutation p.I254M 0.19 tolerated(0.11) benign(0.372) TCGA-CA-6718-01 5 55082460 55082460 G T DDX4 Missense_Mutation p.D327Y 0.24 deleterious(0) probably_damaging(0.98) TCGA-CA-6718-01 5 55155339 55155339 C A IL31RA Silent p.L22L 0.30 TCGA-CA-6718-01 5 56542972 56542972 G A GPBP1 Missense_Mutation p.G252D 0.33 tolerated(0.14) possibly_damaging(0.53) TCGA-CA-6718-01 5 57913691 57913691 G T RAB3C Missense_Mutation p.Q82H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 5 59982882 59982882 T G DEPDC1B Missense_Mutation p.Q74P 0.29 deleterious(0) probably_damaging(0.978) TCGA-CA-6718-01 5 60188155 60188155 A G ERCC8 Intron 0.44 TCGA-CA-6718-01 5 60790168 60790168 C T ZSWIM6 Missense_Mutation p.R422C 0.16 deleterious(0.02) probably_damaging(0.979) TCGA-CA-6718-01 5 61688001 61688001 A G DIMT1 Silent p.N263N 0.21 TCGA-CA-6718-01 5 61699169 61699169 G T DIMT1 Silent p.L28L 0.27 TCGA-CA-6718-01 5 63509923 63509923 G A RNF180 Missense_Mutation p.R257K 0.21 tolerated(0.72) benign(0.004) TCGA-CA-6718-01 5 64036917 64036917 C A SREK1IP1 Nonsense_Mutation p.E58* 0.32 TCGA-CA-6718-01 5 64886077 64886077 C T TRIM23 3'UTR 0.29 TCGA-CA-6718-01 5 65340007 65340007 C T ERBB2IP Missense_Mutation p.L491F 0.09 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 5 65466581 65466581 A C SREK1 Missense_Mutation p.E430D 0.36 tolerated(0.45) unknown(0) TCGA-CA-6718-01 5 66479672 66479672 G A CD180 Silent p.F333F 0.35 TCGA-CA-6718-01 5 67584517 67584517 T G PIK3R1 Intron 0.35 TCGA-CA-6718-01 5 68525126 68525126 G T MRPS36 3'UTR 0.31 TCGA-CA-6718-01 5 68578555 68578555 T C CCDC125 3'UTR 0.37 TCGA-CA-6718-01 5 68616216 68616216 C A CCDC125 Missense_Mutation p.R51I 0.40 tolerated(0.09) benign(0.246) TCGA-CA-6718-01 5 68651479 68651480 - T TAF9 Frame_Shift_Ins p.T108Nfs*5 0.19 TCGA-CA-6718-01 5 70671746 70671746 G T RP11-136K7.2 Intron 0.32 TCGA-CA-6718-01 5 70757696 70757696 G A BDP1 Missense_Mutation p.R181H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 5 70858262 70858262 A G BDP1 Missense_Mutation p.E2553G 0.28 deleterious(0) benign(0.015) TCGA-CA-6718-01 5 70892167 70892167 G T MCCC2 Missense_Mutation p.R86I 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-CA-6718-01 5 70945982 70945982 A C MCCC2 Missense_Mutation p.K487T 0.22 deleterious_low_confidence(0.01) benign(0.371) TCGA-CA-6718-01 5 71494091 71494091 G T MAP1B Missense_Mutation p.D1637Y 0.30 probably_damaging(0.962) TCGA-CA-6718-01 5 71494558 71494558 C A MAP1B Silent p.S1792S 0.24 TCGA-CA-6718-01 5 71495392 71495392 G T MAP1B Missense_Mutation p.K2070N 0.39 possibly_damaging(0.601) TCGA-CA-6718-01 5 71516631 71516631 G T MRPS27 3'UTR 0.24 TCGA-CA-6718-01 5 74130379 74130379 C T FAM169A Missense_Mutation p.R121Q 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-CA-6718-01 5 74651335 74651335 A C HMGCR Missense_Mutation p.D623A 0.22 deleterious(0) possibly_damaging(0.56) TCGA-CA-6718-01 5 74998501 74998501 C T POC5 Missense_Mutation p.D148N 0.26 deleterious(0.04) probably_damaging(0.982) TCGA-CA-6718-01 5 76351368 76351368 G T AGGF1 Nonsense_Mutation p.E555* 0.06 TCGA-CA-6718-01 5 77334941 77334941 C T AP3B1 Missense_Mutation p.R912Q 0.25 tolerated(0.86) benign(0) TCGA-CA-6718-01 5 78426957 78426957 T G BHMT 3'UTR 0.28 TCGA-CA-6718-01 5 79025122 79025122 C T CMYA5 Silent p.T178T 0.32 TCGA-CA-6718-01 5 79028366 79028366 C A CMYA5 Missense_Mutation p.L1260I 0.24 benign(0.067) TCGA-CA-6718-01 5 79616440 79616440 G T SPZ1 Nonsense_Mutation p.E136* 0.34 TCGA-CA-6718-01 5 79837662 79837662 C A FAM151B 3'UTR 0.25 TCGA-CA-6718-01 5 79855251 79855251 C T ANKRD34B Silent p.S196S 0.41 TCGA-CA-6718-01 5 80408526 80408526 C T RASGRF2 Missense_Mutation p.R646C 0.28 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 5 80604767 80604767 G A ZCCHC9 Missense_Mutation p.E180K 0.23 tolerated(0.17) benign(0.149) TCGA-CA-6718-01 5 82816993 82816993 T G VCAN Missense_Mutation p.S956R 0.21 tolerated(0.07) benign(0.002) TCGA-CA-6718-01 5 82835252 82835252 A G VCAN Missense_Mutation p.T2144A 0.15 tolerated(0.1) benign(0.027) TCGA-CA-6718-01 5 82835289 82835289 C A VCAN Missense_Mutation p.S2156Y 0.18 deleterious(0) possibly_damaging(0.655) TCGA-CA-6718-01 5 82836580 82836580 G T VCAN Silent p.V2586V 0.25 TCGA-CA-6718-01 5 82836688 82836688 C T VCAN Silent p.I2622I 0.42 TCGA-CA-6718-01 5 82837413 82837413 C A VCAN Missense_Mutation p.S2864Y 0.41 deleterious(0.01) benign(0.284) TCGA-CA-6718-01 5 82837556 82837556 G T VCAN Nonsense_Mutation p.E2912* 0.22 TCGA-CA-6718-01 5 82843793 82843793 T G VCAN Missense_Mutation p.F3128C 0.34 deleterious(0) possibly_damaging(0.684) TCGA-CA-6718-01 5 82876420 82876420 G A VCAN 3'UTR 0.50 TCGA-CA-6718-01 5 82948487 82948487 G A HAPLN1 Missense_Mutation p.S86L 0.47 tolerated(0.19) benign(0.028) TCGA-CA-6718-01 5 86629097 86629097 G T RASA1 Missense_Mutation p.R281I 0.19 deleterious(0.01) probably_damaging(0.974) TCGA-CA-6718-01 5 86697547 86697547 G A CCNH Silent p.C244C 0.25 TCGA-CA-6718-01 5 89703584 89703584 C A CETN3 Nonsense_Mutation p.E29* 0.25 TCGA-CA-6718-01 5 89913743 89913743 A C GPR98 Missense_Mutation p.E110D 0.30 possibly_damaging(0.636) TCGA-CA-6718-01 5 90008155 90008155 C A GPR98 Missense_Mutation p.L3032I 0.29 probably_damaging(0.973) TCGA-CA-6718-01 5 90041006 90041006 T G GPR98 Missense_Mutation p.L3565V 0.28 possibly_damaging(0.636) TCGA-CA-6718-01 5 90087060 90087060 C T GPR98 Missense_Mutation p.S4805L 0.28 possibly_damaging(0.602) TCGA-CA-6718-01 5 90106895 90106895 C T GPR98 Missense_Mutation p.A5273V 0.31 benign(0) TCGA-CA-6718-01 5 93410372 93410372 C A FAM172A Nonsense_Mutation p.E29* 0.30 TCGA-CA-6718-01 5 93798199 93798199 C A KIAA0825 Missense_Mutation p.L713F 0.23 deleterious(0) probably_damaging(0.929) TCGA-CA-6718-01 5 93856334 93856334 G A KIAA0825 Nonsense_Mutation p.Q197* 0.31 TCGA-CA-6718-01 5 95242469 95242469 G A ELL2 Missense_Mutation p.R167W 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 5 95297426 95297426 C A ELL2 5'UTR 0.27 TCGA-CA-6718-01 5 96090407 96090407 G T CAST Nonsense_Mutation p.E517* 0.23 TCGA-CA-6718-01 5 96328832 96328832 G T LNPEP Missense_Mutation p.K415N 0.36 tolerated(0.06) possibly_damaging(0.456) TCGA-CA-6718-01 5 98199280 98199280 C A CHD1 Missense_Mutation p.R1420I 0.28 tolerated(0.13) benign(0.002) TCGA-CA-6718-01 6 100390897 100390897 G A MCHR2 Missense_Mutation p.S172L 0.30 deleterious(0.01) possibly_damaging(0.747) TCGA-CA-6718-01 6 101296284 101296284 C T ASCC3 Missense_Mutation p.E181K 0.31 tolerated(0.45) benign(0.049) TCGA-CA-6718-01 6 102372545 102372545 T G GRIK2 Missense_Mutation p.F606L 0.29 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 6 10529333 10529333 T G GCNT2 Missense_Mutation p.N63K 0.10 tolerated(0.26) benign(0.022) TCGA-CA-6718-01 6 105526667 105526667 C A LIN28B 3'UTR 0.13 TCGA-CA-6718-01 6 107001410 107001410 T G AIM1 Missense_Mutation p.F1443L 0.27 deleterious(0.03) benign(0.083) TCGA-CA-6718-01 6 107040124 107040124 T C RTN4IP1 Missense_Mutation p.S241G 0.34 tolerated(0.38) benign(0) TCGA-CA-6718-01 6 108543451 108543451 A C SNX3 Intron 0.26 TCGA-CA-6718-01 6 109294665 109294665 G A ARMC2 Missense_Mutation p.R851Q 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-CA-6718-01 6 10961614 10961614 G T SYCP2L Nonsense_Mutation p.E778* 0.31 TCGA-CA-6718-01 6 109748351 109748351 G A PPIL6 Silent p.F143F 0.25 TCGA-CA-6718-01 6 109935496 109935496 T C AK9 Missense_Mutation p.Y500C 0.29 tolerated(0.18) benign(0.428) TCGA-CA-6718-01 6 109940434 109940434 G A AK9 Silent p.V420V 0.30 TCGA-CA-6718-01 6 110777992 110777992 C A SLC22A16 Missense_Mutation p.E94D 0.29 tolerated(0.17) benign(0.016) TCGA-CA-6718-01 6 111320969 111320969 T C RPF2 Silent p.F124F 0.38 TCGA-CA-6718-01 6 111527814 111527814 G T SLC16A10 Missense_Mutation p.R321I 0.32 deleterious(0.03) possibly_damaging(0.571) TCGA-CA-6718-01 6 111588137 111588137 G T KIAA1919 Nonsense_Mutation p.E458* 0.29 TCGA-CA-6718-01 6 111650903 111650903 T G REV3L Missense_Mutation p.E2691D 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-CA-6718-01 6 111696655 111696655 G T REV3L Missense_Mutation p.S968Y 0.30 deleterious(0) possibly_damaging(0.877) TCGA-CA-6718-01 6 111697358 111697358 T G REV3L Missense_Mutation p.S734R 0.23 tolerated(0.06) benign(0.017) TCGA-CA-6718-01 6 11190380 11190380 C A NEDD9 Missense_Mutation p.M574I 0.22 tolerated(0.43) benign(0.002) TCGA-CA-6718-01 6 112672039 112672039 G T RFPL4B 3'UTR 0.23 TCGA-CA-6718-01 6 116325125 116325125 C A FRK Missense_Mutation p.E127D 0.35 deleterious(0.03) benign(0.067) TCGA-CA-6718-01 6 116542303 116542303 C T NT5DC1 Nonsense_Mutation p.R206* 0.32 TCGA-CA-6718-01 6 116949247 116949247 G T RSPH4A Missense_Mutation p.K459N 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 6 116949339 116949339 G A RSPH4A Missense_Mutation p.R490Q 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 6 117128069 117128069 A C GPRC6A Missense_Mutation p.L267V 0.32 tolerated(0.24) benign(0.045) TCGA-CA-6718-01 6 11714659 11714659 G T ADTRP 3'UTR 0.24 TCGA-CA-6718-01 6 117245849 117245849 C A RFX6 Silent p.R525R 0.36 TCGA-CA-6718-01 6 117593770 117593770 C T VGLL2 3'UTR 0.39 TCGA-CA-6718-01 6 117629975 117629975 C T ROS1 Missense_Mutation p.R2184K 0.19 tolerated(0.52) benign(0.015) TCGA-CA-6718-01 6 117681119 117681120 - A ROS1 Frame_Shift_Ins p.L1167Ffs*26 0.19 TCGA-CA-6718-01 6 118014217 118014217 G T NUS1 Missense_Mutation p.R143I 0.34 deleterious(0) probably_damaging(0.958) TCGA-CA-6718-01 6 118596709 118596709 G A SLC35F1 Missense_Mutation p.R242Q 0.33 deleterious(0) benign(0.067) TCGA-CA-6718-01 6 118803070 118803070 C A CEP85L Missense_Mutation p.K542N 0.19 tolerated(0.12) probably_damaging(0.996) TCGA-CA-6718-01 6 118844981 118844981 C A CEP85L Nonsense_Mutation p.E378* 0.48 TCGA-CA-6718-01 6 118845002 118845002 C A CEP85L Nonsense_Mutation p.E371* 0.25 TCGA-CA-6718-01 6 121620610 121620610 T G TBC1D32 Missense_Mutation p.E374D 0.25 deleterious(0.03) benign(0.065) TCGA-CA-6718-01 6 121624897 121624897 C A TBC1D32 Nonsense_Mutation p.E316* 0.18 TCGA-CA-6718-01 6 122768328 122768328 C T SERINC1 Silent p.Q311Q 0.36 TCGA-CA-6718-01 6 123102510 123102510 G T FABP7 Intron 0.08 TCGA-CA-6718-01 6 125621795 125621795 C T HDDC2 Missense_Mutation p.R32Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 6 127608732 127608732 G A RNF146 Missense_Mutation p.R325Q 0.19 tolerated(0.28) benign(0.238) TCGA-CA-6718-01 6 127911394 127911394 C A C6orf58 Missense_Mutation p.F279L 0.22 tolerated(0.16) benign(0.058) TCGA-CA-6718-01 6 127912723 127912723 G T C6orf58 Missense_Mutation p.D317Y 0.16 tolerated_low_confidence(0.12) benign(0.002) TCGA-CA-6718-01 6 128031011 128031011 G A THEMIS 3'UTR 0.26 TCGA-CA-6718-01 6 128176286 128176286 C A THEMIS Nonsense_Mutation p.E47* 0.33 TCGA-CA-6718-01 6 12934040 12934040 C A PHACTR1 Missense_Mutation p.F142L 0.09 unknown(0) TCGA-CA-6718-01 6 130152404 130152404 G T TMEM244 3'Flank 0.19 TCGA-CA-6718-01 6 130460918 130460918 C A L3MBTL3 3'UTR 0.33 TCGA-CA-6718-01 6 130762029 130762029 G T TMEM200A Missense_Mutation p.E154D 0.31 deleterious(0.04) probably_damaging(0.926) TCGA-CA-6718-01 6 131921200 131921200 C T MED23 Missense_Mutation p.S733N 0.26 tolerated(0.47) possibly_damaging(0.715) TCGA-CA-6718-01 6 131923409 131923409 C A MED23 Nonsense_Mutation p.E682* 0.08 TCGA-CA-6718-01 6 131946065 131946065 C A MED23 Missense_Mutation p.R75I 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-CA-6718-01 6 131995443 131995443 G A ENPP3 Intron 0.35 TCGA-CA-6718-01 6 132014716 132014716 G T ENPP3 Missense_Mutation p.R455I 0.30 deleterious(0) probably_damaging(0.988) TCGA-CA-6718-01 6 132029957 132029957 C T CTAGE9 Missense_Mutation p.R734Q 0.17 tolerated(0.11) benign(0.033) TCGA-CA-6718-01 6 132211704 132211704 T G ENPP1 3'UTR 0.39 TCGA-CA-6718-01 6 133050118 133050118 T C VNN3 Intron 0.31 TCGA-CA-6718-01 6 133072350 133072350 C A VNN2 Missense_Mutation p.E378D 0.26 tolerated(0.32) benign(0.002) TCGA-CA-6718-01 6 135307277 135307277 T G HBS1L Missense_Mutation p.E450D 0.42 deleterious(0.03) benign(0.126) TCGA-CA-6718-01 6 135358048 135358048 C T HBS1L Intron 0.55 TCGA-CA-6718-01 6 135518137 135518137 C A MYB Missense_Mutation p.F414L 0.47 tolerated(1) benign(0.001) TCGA-CA-6718-01 6 136599530 136599530 T G BCLAF1 Missense_Mutation p.E163D 0.20 tolerated_low_confidence(0.48) benign(0.388) TCGA-CA-6718-01 6 136667158 136667158 A C MAP7 Missense_Mutation p.F714C 0.39 deleterious(0) unknown(0) TCGA-CA-6718-01 6 138201335 138201335 C A TNFAIP3 Missense_Mutation p.F678L 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6718-01 6 138820456 138820456 A C NHSL1 Intron 0.19 TCGA-CA-6718-01 6 139106413 139106413 G T CCDC28A Missense_Mutation p.E214D 0.25 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 6 139135713 139135713 T G ECT2L Missense_Mutation p.F51C 0.21 deleterious(0) possibly_damaging(0.838) TCGA-CA-6718-01 6 139206668 139206668 G A ECT2L Missense_Mutation p.R685Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-CA-6718-01 6 1394981 1394981 G T FOXF2 Missense_Mutation p.D408Y 0.24 tolerated(0.06) possibly_damaging(0.488) TCGA-CA-6718-01 6 143090764 143090764 A C HIVEP2 Missense_Mutation p.I1704M 0.31 tolerated(0.16) probably_damaging(0.997) TCGA-CA-6718-01 6 143825154 143825154 T G FUCA2 Missense_Mutation p.L216F 0.37 deleterious(0) probably_damaging(0.946) TCGA-CA-6718-01 6 143828540 143828540 C A FUCA2 Missense_Mutation p.K82N 0.34 tolerated(0.24) benign(0.023) TCGA-CA-6718-01 6 144178446 144178446 G A LTV1 Missense_Mutation p.R135Q 0.42 tolerated(0.16) benign(0.408) TCGA-CA-6718-01 6 144820548 144820548 A C UTRN Missense_Mutation p.E1583D 0.23 deleterious(0) benign(0.116) TCGA-CA-6718-01 6 146125931 146125931 C A FBXO30 Missense_Mutation p.K537N 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-CA-6718-01 6 146242394 146242394 G T SHPRH Nonsense_Mutation p.S1306* 0.11 TCGA-CA-6718-01 6 146276213 146276213 T C SHPRH Silent p.P82P 0.19 TCGA-CA-6718-01 6 146350833 146350833 G T GRM1 Missense_Mutation p.E60D 0.45 tolerated(0.69) benign(0.002) TCGA-CA-6718-01 6 150267681 150267681 G T ULBP2 Missense_Mutation p.D175Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 6 150386666 150386666 C T ULBP3 Missense_Mutation p.A166T 0.21 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 6 151243371 151243371 C T MTHFD1L Missense_Mutation p.R339C 0.21 deleterious(0.01) benign(0.416) TCGA-CA-6718-01 6 151670055 151670055 A G AKAP12 Missense_Mutation p.K177E 0.20 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 6 151670352 151670352 G T AKAP12 Nonsense_Mutation p.E276* 0.25 TCGA-CA-6718-01 6 151671598 151671598 G T AKAP12 Missense_Mutation p.R691I 0.34 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 6 151766566 151766566 G T RMND1 Missense_Mutation p.F127L 0.44 tolerated(0.2) benign(0.009) TCGA-CA-6718-01 6 151857562 151857562 T G CCDC170 Missense_Mutation p.F56C 0.15 deleterious(0.01) probably_damaging(0.944) TCGA-CA-6718-01 6 152527408 152527408 G A SYNE1 Silent p.G7638G 0.34 TCGA-CA-6718-01 6 152534852 152534852 T G SYNE1 Missense_Mutation p.E7463D 0.21 possibly_damaging(0.743) TCGA-CA-6718-01 6 152540269 152540269 C A SYNE1 Nonsense_Mutation p.E7305* 0.47 TCGA-CA-6718-01 6 152583226 152583226 C A SYNE1 Nonsense_Mutation p.E6305* 0.24 TCGA-CA-6718-01 6 152652577 152652577 G T SYNE1 Missense_Mutation p.L4415I 0.20 probably_damaging(0.996) TCGA-CA-6718-01 6 152697632 152697632 G A SYNE1 Nonsense_Mutation p.R3070* 0.22 TCGA-CA-6718-01 6 152737875 152737875 C A SYNE1 Missense_Mutation p.K1899N 0.22 benign(0.249) TCGA-CA-6718-01 6 153043045 153043045 G T MYCT1 Missense_Mutation p.R122I 0.11 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 6 153332710 153332710 T C RGS17 Silent p.%3D 0.47 TCGA-CA-6718-01 6 155465849 155465849 G A TIAM2 Silent p.E580E 0.12 TCGA-CA-6718-01 6 155497956 155497956 G T TIAM2 Nonsense_Mutation p.E790* 0.47 TCGA-CA-6718-01 6 158483161 158483161 C T SYNJ2 Silent p.F364F 0.39 TCGA-CA-6718-01 6 158850898 158850898 C A TULP4 Missense_Mutation p.T171K 0.41 deleterious(0) probably_damaging(0.996) TCGA-CA-6718-01 6 159653074 159653074 G T FNDC1 Missense_Mutation p.K510N 0.47 deleterious_low_confidence(0) unknown(0) TCGA-CA-6718-01 6 159657305 159657305 G A FNDC1 Silent p.P1342P 0.36 TCGA-CA-6718-01 6 160221363 160221363 C T PNLDC1 5'UTR 0.34 TCGA-CA-6718-01 6 160467536 160467536 C A IGF2R Missense_Mutation p.S637Y 0.25 deleterious(0.01) possibly_damaging(0.52) TCGA-CA-6718-01 6 160961153 160961153 G A LPA Missense_Mutation p.S1886F 0.44 deleterious(0.03) benign(0.012) TCGA-CA-6718-01 6 161157962 161157962 G T PLG Missense_Mutation p.K575N 0.13 deleterious(0.01) benign(0.343) TCGA-CA-6718-01 6 161173196 161173196 G T PLG Missense_Mutation p.E725D 0.35 tolerated(0.09) benign(0.148) TCGA-CA-6718-01 6 165695138 165695138 C A C6orf118 Missense_Mutation p.K449N 0.16 deleterious(0.01) probably_damaging(0.957) TCGA-CA-6718-01 6 167275676 167275676 C A RPS6KA2 5'UTR 0.41 TCGA-CA-6718-01 6 167755145 167755145 T G TTLL2 Missense_Mutation p.L586R 0.35 tolerated(0.08) benign(0.082) TCGA-CA-6718-01 6 168226722 168226722 A G MLLT4 5'Flank 0.23 TCGA-CA-6718-01 6 168466615 168466615 C T FRMD1 Intron 0.29 TCGA-CA-6718-01 6 169857671 169857671 G A WDR27 3'UTR 0.31 TCGA-CA-6718-01 6 170116085 170116085 C T PHF10 Missense_Mutation p.R170H 0.13 deleterious(0) possibly_damaging(0.794) TCGA-CA-6718-01 6 170628069 170628069 A C FAM120B Missense_Mutation p.K531Q 0.25 tolerated_low_confidence(0.4) benign(0.126) TCGA-CA-6718-01 6 18139944 18139944 G T TPMT Missense_Mutation p.S124Y 0.22 deleterious(0) probably_damaging(0.962) TCGA-CA-6718-01 6 20102509 20102509 T C MBOAT1 3'UTR 0.26 TCGA-CA-6718-01 6 24278330 24278330 T G DCDC2 Missense_Mutation p.K290T 0.22 tolerated(0.13) benign(0.016) TCGA-CA-6718-01 6 24701764 24701764 T C ACOT13 Missense_Mutation p.F115S 0.23 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 6 24785964 24785964 A C GMNN Silent p.S189S 0.37 TCGA-CA-6718-01 6 25081810 25081810 C T CMAHP RNA 0.17 TCGA-CA-6718-01 6 25594678 25594678 A G LRRC16A Silent p.E1014E 0.17 TCGA-CA-6718-01 6 25665185 25665185 C A SCGN Missense_Mutation p.F87L 0.34 tolerated(1) benign(0.002) TCGA-CA-6718-01 6 25773891 25773891 A C SLC17A4 Missense_Mutation p.N326H 0.35 deleterious(0) probably_damaging(0.937) TCGA-CA-6718-01 6 25826710 25826710 C A SLC17A1 Missense_Mutation p.K62N 0.38 tolerated(0.13) benign(0.009) TCGA-CA-6718-01 6 25862245 25862245 C T SLC17A3 Missense_Mutation p.D106N 0.17 tolerated(0.51) benign(0.044) TCGA-CA-6718-01 6 26043461 26043461 G T HIST1H2BB 3'UTR 0.48 TCGA-CA-6718-01 6 26189054 26189054 G T HIST1H4D Missense_Mutation p.A84D 0.25 deleterious(0.02) possibly_damaging(0.449) TCGA-CA-6718-01 6 26234634 26234634 T G HIST1H1D Missense_Mutation p.K176N 0.35 deleterious(0.01) unknown(0) TCGA-CA-6718-01 6 26385531 26385531 G A BTN2A2 Missense_Mutation p.R128H 0.39 tolerated(0.6) benign(0.021) TCGA-CA-6718-01 6 26393020 26393020 C T BTN2A2 Missense_Mutation p.S466L 0.23 deleterious(0.01) possibly_damaging(0.777) TCGA-CA-6718-01 6 26426730 26426730 G T BTN2A3P RNA 0.27 TCGA-CA-6718-01 6 26468289 26468289 C A BTN2A1 Missense_Mutation p.P366T 0.26 deleterious(0.01) possibly_damaging(0.772) TCGA-CA-6718-01 6 26502086 26502086 C A BTN1A1 Silent p.V116V 0.36 TCGA-CA-6718-01 6 26637860 26637860 G T ZNF322 Missense_Mutation p.L308I 0.14 deleterious(0) benign(0.207) TCGA-CA-6718-01 6 27277557 27277557 G T POM121L2 Missense_Mutation p.S798Y 0.33 deleterious(0) probably_damaging(0.959) TCGA-CA-6718-01 6 27419253 27419253 C A ZNF184 Missense_Mutation p.E695D 0.27 deleterious(0.04) benign(0.207) TCGA-CA-6718-01 6 27925280 27925280 A T OR2B6 Missense_Mutation p.I88F 0.36 deleterious(0.04) benign(0.042) TCGA-CA-6718-01 6 28134639 28134639 T G ZNF192P1 RNA 0.23 TCGA-CA-6718-01 6 28135186 28135186 C T ZNF192P1 RNA 0.15 TCGA-CA-6718-01 6 28200918 28200918 C T ZSCAN9 Missense_Mutation p.R434C 0.26 tolerated(0.07) probably_damaging(0.996) TCGA-CA-6718-01 6 28269862 28269862 A C PGBD1 Missense_Mutation p.Q744P 0.29 deleterious(0.01) probably_damaging(0.924) TCGA-CA-6718-01 6 28295166 28295166 C A ZSCAN31 Nonsense_Mutation p.E176* 0.34 TCGA-CA-6718-01 6 28540322 28540322 A C SCAND3 Missense_Mutation p.L1115R 0.25 deleterious(0) probably_damaging(0.916) TCGA-CA-6718-01 6 28540882 28540882 C A SCAND3 Missense_Mutation p.K928N 0.42 deleterious(0.04) probably_damaging(0.997) TCGA-CA-6718-01 6 28541282 28541282 A G SCAND3 Missense_Mutation p.F795S 0.29 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-CA-6718-01 6 28554498 28554498 G A SCAND3 5'UTR 0.39 TCGA-CA-6718-01 6 28962767 28962767 A G ZNF311 3'UTR 0.42 TCGA-CA-6718-01 6 29012535 29012535 G T OR2W1 Missense_Mutation p.L140I 0.21 deleterious(0.03) benign(0.094) TCGA-CA-6718-01 6 29054810 29054810 G T OR2B3 Nonsense_Mutation p.C72* 0.29 TCGA-CA-6718-01 6 29364861 29364861 C T OR12D2 Missense_Mutation p.R129C 0.09 deleterious(0.04) benign(0.021) TCGA-CA-6718-01 6 29430657 29430657 A G OR2H1 3'UTR 0.18 TCGA-CA-6718-01 6 29713302 29713302 C T Y_RNA 5'Flank 0.43 TCGA-CA-6718-01 6 30040955 30040955 T G RNF39 Missense_Mutation p.K221Q 0.36 tolerated(0.08) benign(0.002) TCGA-CA-6718-01 6 30231190 30231190 A C HCG17 Intron 0.22 TCGA-CA-6718-01 6 30708340 30708340 C T FLOT1 Missense_Mutation p.R168Q 0.24 tolerated(0.86) benign(0.184) TCGA-CA-6718-01 6 30951934 30951934 A G MUC21 Intron 0.29 TCGA-CA-6718-01 6 31079597 31079597 C T C6orf15 Missense_Mutation p.R180H 0.42 tolerated(0.55) benign(0) TCGA-CA-6718-01 6 31107805 31107805 G T PSORS1C1 3'UTR 0.50 TCGA-CA-6718-01 6 31555016 31555016 C T LST1 5'UTR 0.37 TCGA-CA-6718-01 6 31668777 31668777 C T ABHD16A Silent p.P95P 0.15 TCGA-CA-6718-01 6 31750359 31750359 G A VARS Missense_Mutation p.R647W 0.40 deleterious(0.01) possibly_damaging(0.67) TCGA-CA-6718-01 6 31852525 31852525 C T EHMT2 Missense_Mutation p.A834T 0.27 tolerated(0.1) probably_damaging(0.989) TCGA-CA-6718-01 6 32304392 32304392 G A C6orf10 Missense_Mutation p.P144S 0.24 deleterious(0.01) benign(0.067) TCGA-CA-6718-01 6 32317571 32317571 C A C6orf10 Nonsense_Mutation p.E99* 0.22 TCGA-CA-6718-01 6 32322909 32322909 T G C6orf10 Missense_Mutation p.N84T 0.23 deleterious(0.01) benign(0.048) TCGA-CA-6718-01 6 32364165 32364165 T G BTNL2 Splice_Site p.X244_splice 0.50 TCGA-CA-6718-01 6 32847094 32847094 C A PPP1R2P1 RNA 0.28 TCGA-CA-6718-01 6 33168868 33168868 G T SLC39A7 5'UTR 0.31 TCGA-CA-6718-01 6 33400506 33400506 G A SYNGAP1 Silent p.T144T 0.19 TCGA-CA-6718-01 6 34100892 34100892 C T GRM4 Missense_Mutation p.E128K 0.37 tolerated(0.41) possibly_damaging(0.759) TCGA-CA-6718-01 6 34498017 34498017 C T PACSIN1 Intron 0.19 TCGA-CA-6718-01 6 350803 350803 T A DUSP22 Intron 0.10 TCGA-CA-6718-01 6 35216356 35216356 C A SCUBE3 Missense_Mutation p.F952L 0.40 tolerated(1) benign(0.001) TCGA-CA-6718-01 6 36269760 36269760 C T PNPLA1 Missense_Mutation p.R300W 0.28 deleterious(0) benign(0.28) TCGA-CA-6718-01 6 37336868 37336868 G T RNF8 Missense_Mutation p.K283N 0.24 tolerated(0.11) benign(0.02) TCGA-CA-6718-01 6 37605937 37605937 G A MDGA1 Intron 0.15 TCGA-CA-6718-01 6 37615052 37615052 C T MDGA1 Missense_Mutation p.R648H 0.29 tolerated(0.38) benign(0.001) TCGA-CA-6718-01 6 37622290 37622290 C T MDGA1 Missense_Mutation p.E248K 0.21 tolerated(0.12) probably_damaging(0.995) TCGA-CA-6718-01 6 38691143 38691143 A C DNAH8 5'UTR 0.23 TCGA-CA-6718-01 6 38754599 38754599 C T DNAH8 Silent p.F601F 0.25 TCGA-CA-6718-01 6 38758151 38758151 T G DNAH8 Silent p.V700V 0.31 TCGA-CA-6718-01 6 38770967 38770967 G T DNAH8 Nonsense_Mutation p.E755* 0.28 TCGA-CA-6718-01 6 38773316 38773316 G T DNAH8 Nonsense_Mutation p.E815* 0.31 TCGA-CA-6718-01 6 38790625 38790625 G T DNAH8 Nonsense_Mutation p.E962* 0.25 TCGA-CA-6718-01 6 38810148 38810148 G T DNAH8 Nonsense_Mutation p.E1274* 0.20 TCGA-CA-6718-01 6 39047386 39047386 G T GLP1R Nonsense_Mutation p.E364* 0.18 TCGA-CA-6718-01 6 39387777 39387777 A C KIF6 Missense_Mutation p.F586C 0.26 deleterious(0) possibly_damaging(0.664) TCGA-CA-6718-01 6 39398839 39398839 G T KIF6 Missense_Mutation p.L582M 0.23 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 6 39688575 39688575 C A KIF6 Missense_Mutation p.D27Y 0.16 deleterious(0) probably_damaging(0.989) TCGA-CA-6718-01 6 39846359 39846359 C A DAAM2 Missense_Mutation p.L514I 0.28 tolerated(0.37) benign(0) TCGA-CA-6718-01 6 4069835 4069835 T G FAM217A Missense_Mutation p.N208H 0.31 deleterious(0) probably_damaging(0.982) TCGA-CA-6718-01 6 41051827 41051827 C A NFYA Missense_Mutation p.L69I 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-CA-6718-01 6 42712850 42712850 A C TBCC Missense_Mutation p.F321C 0.22 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 6 43030664 43030664 G T KLC4 Missense_Mutation p.A108S 0.25 deleterious(0.05) probably_damaging(0.986) TCGA-CA-6718-01 6 43107151 43107151 C A PTK7 Silent p.L510L 0.27 TCGA-CA-6718-01 6 43181594 43181594 C T CUL9 Missense_Mutation p.R1878C 0.17 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 6 44273413 44273413 G A AARS2 Missense_Mutation p.R471W 0.42 deleterious(0) probably_damaging(0.912) TCGA-CA-6718-01 6 44310919 44310919 G T SPATS1 Missense_Mutation p.E29D 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.616) TCGA-CA-6718-01 6 46135692 46135692 G T ENPP5 Missense_Mutation p.S103Y 0.22 tolerated(0.99) probably_damaging(0.958) TCGA-CA-6718-01 6 46659054 46659054 C A TDRD6 Missense_Mutation p.F1063L 0.12 deleterious(0) probably_damaging(0.949) TCGA-CA-6718-01 6 46659489 46659489 T G TDRD6 Missense_Mutation p.I1208M 0.30 tolerated(0.14) benign(0.04) TCGA-CA-6718-01 6 46679243 46679243 C T PLA2G7 Missense_Mutation p.R218Q 0.24 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 6 4716069 4716069 G T CDYL Missense_Mutation p.W19C 0.23 deleterious_low_confidence(0) benign(0) TCGA-CA-6718-01 6 4716099 4716099 C A CDYL Missense_Mutation p.F29L 0.16 tolerated_low_confidence(0.1) unknown(0) TCGA-CA-6718-01 6 49585820 49585820 G A RHAG Silent p.F151F 0.14 TCGA-CA-6718-01 6 49928035 49928035 C A DEFB114 Missense_Mutation p.E60D 0.24 tolerated_low_confidence(0.05) benign(0) TCGA-CA-6718-01 6 50696939 50696939 G T TFAP2D Missense_Mutation p.R266I 0.21 deleterious(0) possibly_damaging(0.906) TCGA-CA-6718-01 6 50811106 50811106 A C TFAP2B 3'UTR 0.32 TCGA-CA-6718-01 6 51907708 51907708 T G PKHD1 Missense_Mutation p.N1016H 0.52 tolerated(0.59) benign(0.002) TCGA-CA-6718-01 6 51909809 51909809 T C PKHD1 Silent p.G890G 0.29 TCGA-CA-6718-01 6 52317559 52317559 G A EFHC1 Missense_Mutation p.R216Q 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-CA-6718-01 6 52996882 52996882 G A GCM1 Missense_Mutation p.L122F 0.41 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 6 53986342 53986342 A C MLIP Missense_Mutation p.K54T 0.45 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 6 54806282 54806282 C A FAM83B Missense_Mutation p.S838Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 6 55145214 55145214 G A HCRTR2 Silent p.A359A 0.46 TCGA-CA-6718-01 6 55266627 55266627 G A GFRAL Silent p.S387S 0.29 TCGA-CA-6718-01 6 56470011 56470011 C A DST Intron 0.32 TCGA-CA-6718-01 6 56470335 56470335 C T DST Intron 0.27 TCGA-CA-6718-01 6 56470592 56470592 T G DST Intron 0.32 TCGA-CA-6718-01 6 56483732 56483732 C A DST Intron 0.23 TCGA-CA-6718-01 6 56507522 56507522 C T DST Missense_Mutation p.R22Q 0.28 benign(0.001) TCGA-CA-6718-01 6 56535494 56535494 A C DST Missense_Mutation p.F176V 0.15 probably_damaging(0.998) TCGA-CA-6718-01 6 56919506 56919506 A C KIAA1586 Missense_Mutation p.N737H 0.28 deleterious(0.01) possibly_damaging(0.587) TCGA-CA-6718-01 6 57012186 57012186 G T ZNF451 Nonsense_Mutation p.E435* 0.13 TCGA-CA-6718-01 6 62687980 62687980 G T KHDRBS2 Missense_Mutation p.F158L 0.20 tolerated(0.06) benign(0.018) TCGA-CA-6718-01 6 64421713 64421713 G T PHF3 Missense_Mutation p.R1410I 0.26 deleterious(0) probably_damaging(0.957) TCGA-CA-6718-01 6 64422723 64422723 A C PHF3 Missense_Mutation p.N1747H 0.32 deleterious(0) probably_damaging(0.914) TCGA-CA-6718-01 6 65531542 65531542 A C EYS Missense_Mutation p.I1080S 0.31 deleterious(0) benign(0.193) TCGA-CA-6718-01 6 66053984 66053984 C T EYS Missense_Mutation p.D516N 0.24 tolerated(0.5) benign(0) TCGA-CA-6718-01 6 69653788 69653788 G T BAI3 Missense_Mutation p.R366I 0.27 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 6 70071325 70071325 T G BAI3 Missense_Mutation p.F1387C 0.23 tolerated(0.35) benign(0.293) TCGA-CA-6718-01 6 70894626 70894626 C T COL19A1 Missense_Mutation p.A936V 0.19 tolerated(0.46) benign(0.102) TCGA-CA-6718-01 6 70926751 70926751 C T COL9A1 Missense_Mutation p.G872D 0.33 probably_damaging(1) TCGA-CA-6718-01 6 71266530 71266530 G T FAM135A Nonsense_Mutation p.E1436* 0.43 TCGA-CA-6718-01 6 71289257 71289257 G T C6orf57 Nonsense_Mutation p.E69* 0.22 TCGA-CA-6718-01 6 71569875 71569875 T C B3GAT2 3'UTR 0.18 TCGA-CA-6718-01 6 71569876 71569876 G A B3GAT2 3'UTR 0.18 TCGA-CA-6718-01 6 72006477 72006477 G T OGFRL1 Missense_Mutation p.A217S 0.31 tolerated(0.09) benign(0.145) TCGA-CA-6718-01 6 73016971 73016971 A C RIMS1 Silent p.V1287V 0.15 TCGA-CA-6718-01 6 73787057 73787057 T G KCNQ5 Missense_Mutation p.L210R 0.34 deleterious(0) probably_damaging(0.979) TCGA-CA-6718-01 6 7379242 7379242 C A CAGE1 Nonsense_Mutation p.E99* 0.26 TCGA-CA-6718-01 6 73919527 73919527 C A RP11-257K9.8 3'UTR 0.28 TCGA-CA-6718-01 6 75823424 75823424 C T COL12A1 Silent p.T2578T 0.24 TCGA-CA-6718-01 6 75833083 75833083 T C COL12A1 Silent p.T2303T 0.31 TCGA-CA-6718-01 6 75852999 75852999 C T COL12A1 Missense_Mutation p.R1599Q 0.10 benign(0.008) TCGA-CA-6718-01 6 75861693 75861693 C A COL12A1 Missense_Mutation p.R1297I 0.31 probably_damaging(0.999) TCGA-CA-6718-01 6 76022424 76022424 C A FILIP1 Nonsense_Mutation p.E1042* 0.22 TCGA-CA-6718-01 6 76023586 76023586 C A FILIP1 Missense_Mutation p.M654I 0.21 tolerated(0.16) benign(0.009) TCGA-CA-6718-01 6 76640702 76640702 G A IMPG1 Silent p.C737C 0.27 TCGA-CA-6718-01 6 79656520 79656520 T G PHIP Missense_Mutation p.K1426N 0.32 deleterious(0.02) benign(0.032) TCGA-CA-6718-01 6 80197584 80197584 C T LCA5 Splice_Site p.X411_splice 0.24 TCGA-CA-6718-01 6 80203373 80203373 T G LCA5 Missense_Mutation p.K272T 0.27 deleterious(0) benign(0.384) TCGA-CA-6718-01 6 80223132 80223132 C A LCA5 Nonsense_Mutation p.E173* 0.32 TCGA-CA-6718-01 6 80715647 80715647 T G TTK Missense_Mutation p.N29K 0.12 deleterious(0.02) benign(0.027) TCGA-CA-6718-01 6 82460062 82460062 C A FAM46A Nonsense_Mutation p.E227* 0.27 TCGA-CA-6718-01 6 83863741 83863741 T G DOPEY1 Missense_Mutation p.M2123R 0.29 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 6 83938569 83938569 C A ME1 Nonsense_Mutation p.E370* 0.22 TCGA-CA-6718-01 6 84834775 84834775 A C KIAA1009 3'UTR 0.36 TCGA-CA-6718-01 6 85446919 85446919 C A TBX18 Missense_Mutation p.E436D 0.34 tolerated(0.57) probably_damaging(0.956) TCGA-CA-6718-01 6 85466569 85466569 C T TBX18 Silent p.S206S 0.27 TCGA-CA-6718-01 6 86324966 86324966 A C SYNCRIP Nonsense_Mutation p.Y460* 0.30 TCGA-CA-6718-01 6 86333816 86333816 T G SYNCRIP Missense_Mutation p.E227D 0.28 deleterious(0) possibly_damaging(0.902) TCGA-CA-6718-01 6 87725710 87725710 C T HTR1E Missense_Mutation p.R220W 0.25 deleterious(0) possibly_damaging(0.632) TCGA-CA-6718-01 6 87967223 87967223 T C ZNF292 Silent p.N1292N 0.37 TCGA-CA-6718-01 6 88140847 88140847 T G C6ORF165 Missense_Mutation p.F419C 0.08 deleterious(0.03) probably_damaging(1) TCGA-CA-6718-01 6 88144746 88144746 T G C6ORF165 Missense_Mutation p.F490C 0.30 deleterious(0) probably_damaging(0.943) TCGA-CA-6718-01 6 88769207 88769207 G T SPACA1 Nonsense_Mutation p.E171* 0.22 TCGA-CA-6718-01 6 88773933 88773933 A C SPACA1 Missense_Mutation p.N243H 0.20 tolerated(0.42) probably_damaging(0.989) TCGA-CA-6718-01 6 89816962 89816962 G A SRSF12 Silent p.R27R 0.30 TCGA-CA-6718-01 6 89871894 89871894 T C PM20D2 Missense_Mutation p.V408A 0.22 deleterious(0.03) benign(0.099) TCGA-CA-6718-01 6 90411328 90411328 G A MDN1 Silent p.F2792F 0.11 TCGA-CA-6718-01 6 90499591 90499591 C A MDN1 Nonsense_Mutation p.E380* 0.31 TCGA-CA-6718-01 6 90572342 90572342 T G CASP8AP2 RNA 0.33 TCGA-CA-6718-01 6 90572854 90572854 G T CASP8AP2 RNA 0.23 TCGA-CA-6718-01 6 90578192 90578192 C A CASP8AP2 RNA 0.30 TCGA-CA-6718-01 6 90642153 90642153 C T BACH2 Missense_Mutation p.E834K 0.47 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 6 93955110 93955110 C A EPHA7 Nonsense_Mutation p.E930* 0.26 TCGA-CA-6718-01 6 96035121 96035121 T G MANEA Intron 0.28 TCGA-CA-6718-01 6 96652217 96652217 T G FUT9 3'UTR 0.28 TCGA-CA-6718-01 6 96652322 96652322 T G FUT9 3'UTR 0.25 TCGA-CA-6718-01 6 96656316 96656316 T G FUT9 3'UTR 0.25 TCGA-CA-6718-01 6 96657881 96657881 A G FUT9 3'UTR 0.27 TCGA-CA-6718-01 6 9903675 9903675 C A OFCC1 Intron 0.28 TCGA-CA-6718-01 6 99284898 99284898 C A POU3F2 3'UTR 0.26 TCGA-CA-6718-01 6 99286532 99286532 T G POU3F2 3'UTR 0.29 TCGA-CA-6718-01 7 100344189 100344189 G A ZAN Silent p.K265K 0.16 TCGA-CA-6718-01 7 100348394 100348394 G A ZAN Missense_Mutation p.E466K 0.21 benign(0.064) TCGA-CA-6718-01 7 100371039 100371039 G T ZAN Missense_Mutation p.G1853C 0.15 unknown(0) TCGA-CA-6718-01 7 100467995 100467995 C T TRIP6 Missense_Mutation p.P247S 0.30 tolerated(0.12) benign(0.015) TCGA-CA-6718-01 7 102824493 102824493 C A DPY19L2P2 RNA 0.24 TCGA-CA-6718-01 7 103018080 103018080 A C SLC26A5 Missense_Mutation p.F651C 0.39 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 7 103050847 103050847 G T SLC26A5 Silent p.I240I 0.16 TCGA-CA-6718-01 7 103151406 103151406 G T RELN Missense_Mutation p.F2722L 0.22 deleterious(0.02) probably_damaging(0.956) TCGA-CA-6718-01 7 103212696 103212696 A C RELN Missense_Mutation p.F1508C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 7 103838178 103838178 C A ORC5 Nonsense_Mutation p.E146* 0.19 TCGA-CA-6718-01 7 104731690 104731690 G T KMT2E Nonsense_Mutation p.E551* 0.30 TCGA-CA-6718-01 7 105103129 105103129 G A PUS7 Nonsense_Mutation p.R566* 0.13 TCGA-CA-6718-01 7 105105846 105105846 A G PUS7 Missense_Mutation p.I514T 0.46 deleterious(0.02) benign(0.201) TCGA-CA-6718-01 7 105673198 105673198 C A CDHR3 3'UTR 0.24 TCGA-CA-6718-01 7 106508164 106508164 G A PIK3CG Missense_Mutation p.S53N 0.29 tolerated(0.52) benign(0.013) TCGA-CA-6718-01 7 106545585 106545585 G A PIK3CG Missense_Mutation p.R1021H 0.12 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 7 106545896 106545896 G A PIK3CG 3'UTR 0.25 TCGA-CA-6718-01 7 107217819 107217819 C T DUS4L Silent p.T256T 0.32 TCGA-CA-6718-01 7 107576054 107576054 C T LAMB1 Missense_Mutation p.E1332K 0.15 deleterious(0) probably_damaging(0.947) TCGA-CA-6718-01 7 107743538 107743538 G T LAMB4 Silent p.L377L 0.33 TCGA-CA-6718-01 7 107746983 107746983 A C LAMB4 Missense_Mutation p.I209S 0.29 deleterious(0) possibly_damaging(0.809) TCGA-CA-6718-01 7 108112860 108112860 G T PNPLA8 Missense_Mutation p.F778L 0.16 tolerated(0.07) benign(0.302) TCGA-CA-6718-01 7 108137133 108137133 C T PNPLA8 Missense_Mutation p.R507Q 0.31 deleterious(0.02) benign(0.427) TCGA-CA-6718-01 7 108213647 108213647 G T DNAJB9 Missense_Mutation p.E174D 0.20 tolerated(0.48) benign(0.13) TCGA-CA-6718-01 7 11022530 11022530 G A PHF14 Missense_Mutation p.R215Q 0.27 tolerated_low_confidence(0.14) probably_damaging(0.968) TCGA-CA-6718-01 7 110303654 110303654 G A IMMP2L 3'UTR 0.24 TCGA-CA-6718-01 7 111409704 111409704 C T DOCK4 Missense_Mutation p.E1228K 0.38 tolerated(0.16) benign(0.377) TCGA-CA-6718-01 7 111449442 111449442 A G DOCK4 Missense_Mutation p.F1008L 0.22 deleterious(0.05) benign(0.41) TCGA-CA-6718-01 7 111634222 111634222 C A DOCK4 Missense_Mutation p.D95Y 0.25 deleterious(0) possibly_damaging(0.498) TCGA-CA-6718-01 7 112115619 112115619 C A IFRD1 3'UTR 0.27 TCGA-CA-6718-01 7 112724648 112724648 A C GPR85 Missense_Mutation p.I43M 0.16 tolerated(0.15) possibly_damaging(0.738) TCGA-CA-6718-01 7 113519485 113519485 C T PPP1R3A Silent p.G554G 0.22 TCGA-CA-6718-01 7 113558355 113558355 T C PPP1R3A Missense_Mutation p.K233E 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 7 114271744 114271744 C T FOXP2 Silent p.V278V 0.34 TCGA-CA-6718-01 7 114619805 114619805 C A MDFIC Silent p.V263V 0.28 TCGA-CA-6718-01 7 11514009 11514009 C A THSD7A Missense_Mutation p.R735I 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 7 115596742 115596742 C A TFEC Nonsense_Mutation p.E125* 0.17 TCGA-CA-6718-01 7 11581192 11581192 C T THSD7A Missense_Mutation p.C559Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 7 116397714 116397714 C T MET Missense_Mutation p.S663L 0.23 tolerated(0.28) benign(0.198) TCGA-CA-6718-01 7 116418932 116418932 G A MET Missense_Mutation p.R1166Q 0.34 deleterious(0.03) probably_damaging(0.984) TCGA-CA-6718-01 7 116418997 116418997 C T MET Nonsense_Mutation p.R1188* 0.29 TCGA-CA-6718-01 7 117232200 117232200 C A CFTR Nonsense_Mutation p.S660* 0.27 TCGA-CA-6718-01 7 117417799 117417799 G A CTTNBP2 Silent p.H848H 0.35 TCGA-CA-6718-01 7 120607688 120607688 A C ING3 Missense_Mutation p.K181T 0.31 tolerated(0.24) probably_damaging(0.968) TCGA-CA-6718-01 7 120780964 120780964 G T CPED1 Missense_Mutation p.D595Y 0.27 deleterious(0) probably_damaging(0.946) TCGA-CA-6718-01 7 120935804 120935804 C T CPED1 3'UTR 0.30 TCGA-CA-6718-01 7 121650567 121650567 C T PTPRZ1 Silent p.F489F 0.15 TCGA-CA-6718-01 7 121699913 121699913 C A PTPRZ1 Missense_Mutation p.L2260M 0.40 deleterious(0.04) benign(0.056) TCGA-CA-6718-01 7 122342489 122342489 C T RNF148 Missense_Mutation p.E106K 0.43 tolerated(0.19) probably_damaging(0.995) TCGA-CA-6718-01 7 123268961 123268961 C T ASB15 Missense_Mutation p.R305W 0.10 deleterious(0.03) benign(0.002) TCGA-CA-6718-01 7 123303228 123303228 C T LMOD2 Missense_Mutation p.R530W 0.34 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 7 123346376 123346376 G A WASL Nonsense_Mutation p.R131* 0.23 TCGA-CA-6718-01 7 123593877 123593877 G A SPAM1 Missense_Mutation p.G85R 0.31 tolerated(0.05) possibly_damaging(0.693) TCGA-CA-6718-01 7 124386463 124386463 T G GPR37 3'UTR 0.23 TCGA-CA-6718-01 7 126173191 126173191 G A GRM8 Missense_Mutation p.L749F 0.25 tolerated(0.29) probably_damaging(1) TCGA-CA-6718-01 7 126544684 126544684 C T GRM8 Missense_Mutation p.E261K 0.19 tolerated(0.23) benign(0.334) TCGA-CA-6718-01 7 127014098 127014098 A C ZNF800 Nonsense_Mutation p.L431* 0.25 TCGA-CA-6718-01 7 127014833 127014833 G A ZNF800 Missense_Mutation p.T186I 0.23 tolerated(0.2) benign(0.004) TCGA-CA-6718-01 7 1273286 1273286 C T UNCX Silent p.R135R 0.25 TCGA-CA-6718-01 7 127955002 127955002 T C RBM28 Silent p.Q620Q 0.34 TCGA-CA-6718-01 7 127961395 127961395 T C RBM28 Missense_Mutation p.K496R 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6718-01 7 128450300 128450300 A C CCDC136 Missense_Mutation p.L636F 0.13 deleterious(0.04) probably_damaging(0.949) TCGA-CA-6718-01 7 128457841 128457841 C A CCDC136 Missense_Mutation p.F1131L 0.06 tolerated(0.09) benign(0.006) TCGA-CA-6718-01 7 128480651 128480651 C T FLNC Silent p.F533F 0.22 TCGA-CA-6718-01 7 128483926 128483926 C A FLNC Missense_Mutation p.P963Q 0.15 deleterious(0) possibly_damaging(0.852) TCGA-CA-6718-01 7 128640606 128640606 G A TNPO3 Silent p.C296C 0.17 TCGA-CA-6718-01 7 129046288 129046288 A G AHCYL2 Missense_Mutation p.I426V 0.29 deleterious(0) probably_damaging(0.961) TCGA-CA-6718-01 7 129847909 129847909 G T SSMEM1 Missense_Mutation p.M53I 0.31 tolerated(0.35) benign(0.043) TCGA-CA-6718-01 7 129987678 129987678 A C CPA5 Missense_Mutation p.K63T 0.27 deleterious(0.04) benign(0.015) TCGA-CA-6718-01 7 130052067 130052067 T G CEP41 Missense_Mutation p.K54Q 0.25 deleterious(0.03) possibly_damaging(0.77) TCGA-CA-6718-01 7 131072001 131072001 T C MKLN1 Silent p.N97N 0.29 TCGA-CA-6718-01 7 132973684 132973684 G T EXOC4 Missense_Mutation p.E95D 0.29 tolerated(0.24) benign(0.21) TCGA-CA-6718-01 7 134225809 134225809 T C AKR1B10 Silent p.L307L 0.28 TCGA-CA-6718-01 7 134260226 134260226 T G AKR1B15 Missense_Mutation p.F190V 0.22 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 7 134552545 134552545 G A CALD1 Missense_Mutation p.E21K 0.15 deleterious(0.02) unknown(0) TCGA-CA-6718-01 7 134625950 134625950 C A CALD1 Missense_Mutation p.F498L 0.35 tolerated(0.4) unknown(0) TCGA-CA-6718-01 7 134722229 134722229 G T AGBL3 Missense_Mutation p.E466D 0.19 deleterious(0.03) possibly_damaging(0.533) TCGA-CA-6718-01 7 134730609 134730609 C A AGBL3 Silent p.V596V 0.19 TCGA-CA-6718-01 7 134889048 134889048 G A WDR91 Missense_Mutation p.S288L 0.28 tolerated(0.29) benign(0.002) TCGA-CA-6718-01 7 135286151 135286151 T G NUP205 Missense_Mutation p.F803C 0.34 deleterious(0.03) probably_damaging(0.967) TCGA-CA-6718-01 7 135612972 135612972 A C AC015987.2 3'UTR 0.24 TCGA-CA-6718-01 7 136701287 136701287 C A CHRM2 3'UTR 0.23 TCGA-CA-6718-01 7 136701741 136701741 G T CHRM2 3'UTR 0.43 TCGA-CA-6718-01 7 137082151 137082151 C T DGKI Missense_Mutation p.E985K 0.31 tolerated(0.33) possibly_damaging(0.55) TCGA-CA-6718-01 7 137293780 137293780 T G DGKI Missense_Mutation p.K367Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 7 138203943 138203943 G T TRIM24 Missense_Mutation p.G214V 0.22 tolerated(0.07) possibly_damaging(0.878) TCGA-CA-6718-01 7 138223420 138223420 C T TRIM24 Missense_Mutation p.R339C 0.29 deleterious(0.01) probably_damaging(0.96) TCGA-CA-6718-01 7 138262238 138262238 C T TRIM24 Nonsense_Mutation p.R721* 0.25 TCGA-CA-6718-01 7 138417785 138417785 A C ATP6V0A4 Missense_Mutation p.F582C 0.30 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 7 138763396 138763396 G T ZC3HAV1 Missense_Mutation p.S492Y 0.08 deleterious(0) benign(0.125) TCGA-CA-6718-01 7 139092088 139092088 G T LUC7L2 Nonsense_Mutation p.E293* 0.17 TCGA-CA-6718-01 7 139094363 139094363 G T LUC7L2 Nonsense_Mutation p.E314* 0.22 TCGA-CA-6718-01 7 139094375 139094375 A G LUC7L2 Missense_Mutation p.R318G 0.10 tolerated(0.06) benign(0.171) TCGA-CA-6718-01 7 139415803 139415803 A G HIPK2 Missense_Mutation p.V344A 0.29 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 7 140508768 140508768 G A BRAF Nonsense_Mutation p.R178* 0.43 TCGA-CA-6718-01 7 141366134 141366134 C T KIAA1147 Missense_Mutation p.R258H 0.31 deleterious(0) probably_damaging(0.988) TCGA-CA-6718-01 7 141619088 141619088 G T OR9A4 Missense_Mutation p.R138I 0.24 deleterious(0.02) benign(0.053) TCGA-CA-6718-01 7 141758086 141758086 C T MGAM Silent p.I1259I 0.24 TCGA-CA-6718-01 7 141766401 141766402 - T MGAM Intron 0.22 TCGA-CA-6718-01 7 142574543 142574543 C T TRPV6 Missense_Mutation p.V179M 0.43 tolerated(0.05) probably_damaging(0.989) TCGA-CA-6718-01 7 143018897 143018897 G A CLCN1 Missense_Mutation p.A218T 0.18 deleterious(0) benign(0.44) TCGA-CA-6718-01 7 143573426 143573426 A C FAM115A Missense_Mutation p.I92M 0.44 deleterious(0.02) benign(0.118) TCGA-CA-6718-01 7 148312452 148312452 T G C7orf33 Missense_Mutation p.S165A 0.26 deleterious_low_confidence(0) benign(0.198) TCGA-CA-6718-01 7 148506461 148506461 C T EZH2 Missense_Mutation p.R684H 0.31 tolerated(0.05) benign(0.278) TCGA-CA-6718-01 7 148950967 148950967 G A ZNF212 Missense_Mutation p.E317K 0.33 tolerated(0.81) benign(0.007) TCGA-CA-6718-01 7 150217530 150217530 C T GIMAP7 Silent p.I156I 0.33 TCGA-CA-6718-01 7 150390013 150390013 C A GIMAP2 Missense_Mutation p.H213Q 0.20 tolerated(0.16) possibly_damaging(0.756) TCGA-CA-6718-01 7 151705006 151705006 G T GALNTL5 Nonsense_Mutation p.E335* 0.18 TCGA-CA-6718-01 7 151962253 151962253 C A KMT2C Missense_Mutation p.D352Y 0.08 probably_damaging(0.999) TCGA-CA-6718-01 7 15240890 15240890 G T AGMO 3'UTR 0.25 TCGA-CA-6718-01 7 158439243 158439243 C A NCAPG2 Nonsense_Mutation p.E1030* 0.29 TCGA-CA-6718-01 7 158663977 158663977 G A WDR60 Missense_Mutation p.E72K 0.37 deleterious(0.03) possibly_damaging(0.456) TCGA-CA-6718-01 7 16839417 16839417 T C AGR2 Missense_Mutation p.N94S 0.47 tolerated(0.87) benign(0.003) TCGA-CA-6718-01 7 17833685 17833685 G T SNX13 Missense_Mutation p.S953Y 0.19 tolerated_low_confidence(0.13) benign(0.002) TCGA-CA-6718-01 7 1786981 1786981 C T ELFN1 3'UTR 0.22 TCGA-CA-6718-01 7 18625100 18625100 G T HDAC9 Missense_Mutation p.E73D 0.18 tolerated(0.1) probably_damaging(0.995) TCGA-CA-6718-01 7 18630064 18630064 G T HDAC9 Nonsense_Mutation p.E124* 0.32 TCGA-CA-6718-01 7 19737805 19737805 C T TWISTNB 3'UTR 0.31 TCGA-CA-6718-01 7 20682917 20682917 A C ABCB5 Missense_Mutation p.Q142P 0.28 tolerated(0.31) benign(0.162) TCGA-CA-6718-01 7 20691132 20691132 C T ABCB5 Silent p.F474F 0.37 TCGA-CA-6718-01 7 21598489 21598489 G T DNAH11 Nonsense_Mutation p.E189* 0.19 TCGA-CA-6718-01 7 21730386 21730386 T C DNAH11 Silent p.F1983F 0.10 TCGA-CA-6718-01 7 21784164 21784164 G T DNAH11 Missense_Mutation p.D2762Y 0.24 probably_damaging(1) TCGA-CA-6718-01 7 21784555 21784555 A G DNAH11 Missense_Mutation p.D2802G 0.27 benign(0.096) TCGA-CA-6718-01 7 21784612 21784612 C T DNAH11 Missense_Mutation p.T2821M 0.36 benign(0.01) TCGA-CA-6718-01 7 21882249 21882249 G A DNAH11 Silent p.K3600K 0.31 TCGA-CA-6718-01 7 21904205 21904205 G A DNAH11 Missense_Mutation p.R3816Q 0.24 possibly_damaging(0.59) TCGA-CA-6718-01 7 22999934 22999934 C T FAM126A Missense_Mutation p.R311Q 0.21 deleterious(0.01) possibly_damaging(0.815) TCGA-CA-6718-01 7 23018050 23018050 A G FAM126A Silent p.C57C 0.29 TCGA-CA-6718-01 7 23023628 23023628 T G FAM126A Missense_Mutation p.N30H 0.26 deleterious(0.02) possibly_damaging(0.639) TCGA-CA-6718-01 7 23307508 23307508 G T GPNMB Missense_Mutation p.G386V 0.36 deleterious(0) probably_damaging(0.992) TCGA-CA-6718-01 7 23794036 23794036 G T STK31 Missense_Mutation p.E412D 0.29 tolerated(0.16) benign(0.225) TCGA-CA-6718-01 7 23802531 23802531 A C STK31 Missense_Mutation p.K469Q 0.43 tolerated(0.2) benign(0.006) TCGA-CA-6718-01 7 2400472 2400472 G T EIF3B Missense_Mutation p.K209N 0.21 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 7 25207921 25207921 C A C7orf31 Nonsense_Mutation p.E100* 0.25 TCGA-CA-6718-01 7 2552828 2552828 A C LFNG Silent p.R29R 0.29 TCGA-CA-6718-01 7 26246075 26246075 C T CBX3 Nonsense_Mutation p.R38* 0.18 TCGA-CA-6718-01 7 26894420 26894420 T G SKAP2 Missense_Mutation p.K53Q 0.27 tolerated(0.73) possibly_damaging(0.764) TCGA-CA-6718-01 7 29070250 29070250 G T CPVL Silent p.I421I 0.31 TCGA-CA-6718-01 7 29606866 29606866 T C PRR15 3'UTR 0.42 TCGA-CA-6718-01 7 30536801 30536801 C A GGCT Missense_Mutation p.E158D 0.33 tolerated(0.12) benign(0.001) TCGA-CA-6718-01 7 31135316 31135316 G A ADCYAP1R1 Intron 0.22 TCGA-CA-6718-01 7 31378199 31378199 G T NEUROD6 Silent p.S228S 0.28 TCGA-CA-6718-01 7 31912994 31912994 A G PDE1C Missense_Mutation p.F234L 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-CA-6718-01 7 31920413 31920413 C A PDE1C Missense_Mutation p.K123N 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-CA-6718-01 7 33055404 33055404 A C NT5C3A Missense_Mutation p.F263V 0.26 deleterious(0) probably_damaging(0.951) TCGA-CA-6718-01 7 35923577 35923577 A G SEPT7 Missense_Mutation p.Y268C 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 7 37780373 37780373 C T GPR141 Silent p.F126F 0.24 TCGA-CA-6718-01 7 37780684 37780684 T G GPR141 Missense_Mutation p.F230C 0.25 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 7 38424356 38424356 T G AMPH 3'UTR 0.36 TCGA-CA-6718-01 7 38433623 38433623 G A AMPH Silent p.L530L 0.39 TCGA-CA-6718-01 7 39736294 39736294 T G RALA Missense_Mutation p.L112V 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6718-01 7 42018278 42018278 C A GLI3 Nonsense_Mutation p.E523* 0.40 TCGA-CA-6718-01 7 42018306 42018306 G A GLI3 Silent p.F513F 0.19 TCGA-CA-6718-01 7 4285390 4285390 G A SDK1 Missense_Mutation p.E2112K 0.45 deleterious(0.01) possibly_damaging(0.533) TCGA-CA-6718-01 7 43594343 43594343 C T HECW1 Missense_Mutation p.R1555W 0.24 deleterious(0) probably_damaging(0.993) TCGA-CA-6718-01 7 44156512 44156512 G A POLD2 Silent p.D228D 0.33 TCGA-CA-6718-01 7 44259835 44259835 G T CAMK2B Silent p.V609V 0.36 TCGA-CA-6718-01 7 45120731 45120731 G T NACAD Silent p.V1463V 0.26 TCGA-CA-6718-01 7 45121830 45121830 C A NACAD Missense_Mutation p.D1317Y 0.17 deleterious(0) probably_damaging(0.987) TCGA-CA-6718-01 7 47937595 47937595 G A PKD1L1 Missense_Mutation p.A754V 0.26 deleterious(0.01) benign(0.367) TCGA-CA-6718-01 7 48046880 48046880 A C SUN3 Missense_Mutation p.F125C 0.27 deleterious(0.03) possibly_damaging(0.497) TCGA-CA-6718-01 7 48099938 48099938 T A C7orf57 3'UTR 0.23 TCGA-CA-6718-01 7 48317839 48317839 G T ABCA13 Nonsense_Mutation p.E2350* 0.31 TCGA-CA-6718-01 7 48407490 48407490 G T ABCA13 Missense_Mutation p.E3596D 0.26 probably_damaging(0.982) TCGA-CA-6718-01 7 48564007 48564007 G T ABCA13 Missense_Mutation p.D4739Y 0.27 probably_damaging(0.962) TCGA-CA-6718-01 7 4900289 4900289 C A PAPOLB Nonsense_Mutation p.E384* 0.21 TCGA-CA-6718-01 7 50547550 50547550 C A DDC Missense_Mutation p.R319I 0.29 tolerated(0.07) benign(0.278) TCGA-CA-6718-01 7 5104403 5104403 C A RBAK Missense_Mutation p.S439Y 0.13 tolerated(0.38) probably_damaging(1) TCGA-CA-6718-01 7 54825289 54825289 T G SEC61G Splice_Site 0.26 TCGA-CA-6718-01 7 56022603 56022603 A G MRPS17 Missense_Mutation p.Y42C 0.29 deleterious(0) possibly_damaging(0.908) TCGA-CA-6718-01 7 56088914 56088914 G T PSPH 5'UTR 0.25 TCGA-CA-6718-01 7 57187485 57187485 G T ZNF479 3'UTR 0.19 TCGA-CA-6718-01 7 57529508 57529508 C A ZNF716 Missense_Mutation p.F447L 0.24 tolerated(0.67) benign(0) TCGA-CA-6718-01 7 6080699 6080699 C A EIF2AK1 Nonsense_Mutation p.E315* 0.23 TCGA-CA-6718-01 7 6369332 6369332 C T FAM220A 3'UTR 0.37 TCGA-CA-6718-01 7 63726349 63726349 G T ZNF679 Missense_Mutation p.R113I 0.34 deleterious(0.01) benign(0.006) TCGA-CA-6718-01 7 63726373 63726373 A G ZNF679 Missense_Mutation p.D121G 0.26 tolerated(0.12) benign(0.023) TCGA-CA-6718-01 7 64292481 64292481 C A ZNF138 Silent p.V261V 0.27 TCGA-CA-6718-01 7 64377989 64377989 G T ZNF273 Nonsense_Mutation p.E45* 0.35 TCGA-CA-6718-01 7 64438203 64438203 C A ZNF117 3'UTR 0.50 TCGA-CA-6718-01 7 65221526 65221526 C A SNORA22 3'Flank 0.19 TCGA-CA-6718-01 7 6537698 6537698 G A GRID2IP Silent p.F1187F 0.21 TCGA-CA-6718-01 7 65821817 65821817 G A TPST1 Silent p.E367E 0.33 TCGA-CA-6718-01 7 6620267 6620267 G A ZDHHC4 Silent p.S25S 0.34 TCGA-CA-6718-01 7 70853381 70853381 G A WBSCR17 Missense_Mutation p.D195N 0.26 tolerated(0.23) possibly_damaging(0.904) TCGA-CA-6718-01 7 71175860 71175860 C A WBSCR17 Missense_Mutation p.L539M 0.35 tolerated(0.22) benign(0.024) TCGA-CA-6718-01 7 72436464 72436464 G A TRIM74 Silent p.I75I 0.16 TCGA-CA-6718-01 7 72907227 72907227 C T BAZ1B Missense_Mutation p.R199Q 0.28 deleterious(0.01) probably_damaging(0.929) TCGA-CA-6718-01 7 73151384 73151384 G A ABHD11 Silent p.F230F 0.42 TCGA-CA-6718-01 7 75959308 75959308 C A YWHAG Missense_Mutation p.K110N 0.25 deleterious_low_confidence(0.01) benign(0.038) TCGA-CA-6718-01 7 76891536 76891536 G A CCDC146 Missense_Mutation p.R362Q 0.15 deleterious(0) possibly_damaging(0.742) TCGA-CA-6718-01 7 80276132 80276132 C T CD36 Silent p.L26L 0.26 TCGA-CA-6718-01 7 80303448 80303448 G A CD36 Silent p.S468S 0.24 TCGA-CA-6718-01 7 80390939 80390939 G T SEMA3C Missense_Mutation p.S493Y 0.31 deleterious(0.01) possibly_damaging(0.857) TCGA-CA-6718-01 7 8043541 8043541 A G GLCCI1 Missense_Mutation p.D154G 0.24 tolerated(0.08) possibly_damaging(0.831) TCGA-CA-6718-01 7 80447691 80447691 C T SEMA3C Missense_Mutation p.R124H 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-CA-6718-01 7 81667469 81667469 G A CACNA2D1 Missense_Mutation p.A321V 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-CA-6718-01 7 8178656 8178656 A C ICA1 Nonsense_Mutation p.L326* 0.19 TCGA-CA-6718-01 7 82579600 82579600 C T PCLO Missense_Mutation p.R3435Q 0.28 unknown(0) TCGA-CA-6718-01 7 82785548 82785548 C A PCLO Nonsense_Mutation p.E137* 0.21 TCGA-CA-6718-01 7 83631322 83631322 C A SEMA3A Missense_Mutation p.E467D 0.33 tolerated(0.42) benign(0.045) TCGA-CA-6718-01 7 84628737 84628737 C A SEMA3D 3'UTR 0.17 TCGA-CA-6718-01 7 84671486 84671486 C T SEMA3D Splice_Site p.X326_splice 0.29 TCGA-CA-6718-01 7 87038555 87038555 C T ABCB4 Silent p.K1026K 0.15 TCGA-CA-6718-01 7 87056114 87056114 T G ABCB4 Missense_Mutation p.K672N 0.22 tolerated(0.13) benign(0.001) TCGA-CA-6718-01 7 87407205 87407205 C T RUNDC3B Missense_Mutation p.S314F 0.36 tolerated(0.72) benign(0.142) TCGA-CA-6718-01 7 87507508 87507508 A C DBF4 Missense_Mutation p.K63Q 0.28 deleterious(0.01) possibly_damaging(0.55) TCGA-CA-6718-01 7 88424340 88424340 G T C7orf62 5'UTR 0.20 TCGA-CA-6718-01 7 88963273 88963273 A C ZNF804B Missense_Mutation p.K326T 0.41 deleterious(0.05) benign(0.063) TCGA-CA-6718-01 7 88964999 88964999 G T ZNF804B Missense_Mutation p.K901N 0.21 deleterious(0.05) benign(0.142) TCGA-CA-6718-01 7 88965245 88965245 A G ZNF804B Missense_Mutation p.I983M 0.33 tolerated(0.28) benign(0.005) TCGA-CA-6718-01 7 89901157 89901157 G T C7orf63 Missense_Mutation p.D249Y 0.31 deleterious(0.01) probably_damaging(0.982) TCGA-CA-6718-01 7 89906529 89906529 A C C7orf63 Missense_Mutation p.K346Q 0.29 deleterious(0) probably_damaging(0.981) TCGA-CA-6718-01 7 90419937 90419937 G T CDK14 Nonsense_Mutation p.E154* 0.35 TCGA-CA-6718-01 7 91603144 91603144 T C AKAP9 Silent p.N56N 0.25 TCGA-CA-6718-01 7 91699381 91699381 A G AKAP9 Missense_Mutation p.D2123G 0.22 probably_damaging(0.999) TCGA-CA-6718-01 7 92731174 92731174 C A SAMD9 Missense_Mutation p.D1413Y 0.31 deleterious(0.01) benign(0.438) TCGA-CA-6718-01 7 92734394 92734394 G T SAMD9 Missense_Mutation p.F339L 0.22 tolerated(0.66) benign(0.002) TCGA-CA-6718-01 7 92761040 92761040 T C SAMD9L Silent p.Q1415Q 0.36 TCGA-CA-6718-01 7 92838162 92838162 G T HEPACAM2 Missense_Mutation p.S248Y 0.13 deleterious(0) probably_damaging(0.971) TCGA-CA-6718-01 7 92983000 92983000 C T CCDC132 Missense_Mutation p.R838C 0.24 tolerated(0.14) probably_damaging(0.953) TCGA-CA-6718-01 7 93108796 93108796 G A CALCR Silent p.A43A 0.31 TCGA-CA-6718-01 7 93555561 93555561 G T GNG11 3'UTR 0.36 TCGA-CA-6718-01 7 94053705 94053705 C A COL1A2 Missense_Mutation p.L875I 0.40 unknown(0) TCGA-CA-6718-01 7 94297724 94297724 A C PEG10 3'UTR 0.33 TCGA-CA-6718-01 7 94298161 94298161 C A PEG10 3'UTR 0.19 TCGA-CA-6718-01 7 94539802 94539802 G T PPP1R9A Missense_Mutation p.R126I 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 7 94539911 94539911 G T PPP1R9A Missense_Mutation p.K162N 0.11 tolerated(0.09) probably_damaging(0.982) TCGA-CA-6718-01 7 94989437 94989437 G A PON3 Missense_Mutation p.R305C 0.14 deleterious(0) probably_damaging(0.967) TCGA-CA-6718-01 7 95668610 95668610 C A DYNC1I1 Silent p.V479V 0.29 TCGA-CA-6718-01 7 95709726 95709726 C T DYNC1I1 Missense_Mutation p.R585C 0.28 deleterious(0.01) possibly_damaging(0.726) TCGA-CA-6718-01 7 96650252 96650252 C T DLX5 Silent p.A222A 0.22 TCGA-CA-6718-01 7 97616434 97616434 C A OCM2 Nonsense_Mutation p.E77* 0.30 TCGA-CA-6718-01 7 98495439 98495439 A G TRRAP Missense_Mutation p.T195A 0.39 benign(0.001) TCGA-CA-6718-01 7 99144609 99144609 C A FAM200A Missense_Mutation p.E474D 0.20 tolerated(0.05) possibly_damaging(0.644) TCGA-CA-6718-01 7 99144807 99144807 C A FAM200A Missense_Mutation p.E408D 0.29 tolerated(0.16) possibly_damaging(0.576) TCGA-CA-6718-01 7 99227111 99227111 G A ZSCAN25 Missense_Mutation p.R368Q 0.41 tolerated(0.06) benign(0.27) TCGA-CA-6718-01 7 99364028 99364028 C A CYP3A4 Missense_Mutation p.Q279H 0.11 tolerated(0.07) probably_damaging(0.974) TCGA-CA-6718-01 8 100883054 100883054 C T VPS13B Missense_Mutation p.R3837C 0.43 deleterious(0.01) possibly_damaging(0.898) TCGA-CA-6718-01 8 101076109 101076109 T G RGS22 Missense_Mutation p.E296A 0.43 tolerated(0.23) benign(0.16) TCGA-CA-6718-01 8 101154064 101154064 C T FBXO43 Missense_Mutation p.E140K 0.25 deleterious(0.04) benign(0.357) TCGA-CA-6718-01 8 101273892 101273892 G T RNF19A Missense_Mutation p.S520R 0.21 deleterious(0.04) benign(0.063) TCGA-CA-6718-01 8 101727768 101727768 C A PABPC1 Nonsense_Mutation p.E189* 0.33 TCGA-CA-6718-01 8 101937250 101937250 G T YWHAZ Missense_Mutation p.F104L 0.19 deleterious_low_confidence(0.03) benign(0.146) TCGA-CA-6718-01 8 103220324 103220324 A C RRM2B 3'UTR 0.20 TCGA-CA-6718-01 8 103236361 103236361 A C RRM2B Missense_Mutation p.L155V 0.27 deleterious_low_confidence(0.01) benign(0.304) TCGA-CA-6718-01 8 103287998 103287998 G A UBR5 Missense_Mutation p.R2190C 0.33 deleterious(0) probably_damaging(0.962) TCGA-CA-6718-01 8 103665782 103665782 C A KLF10 Intron 0.41 TCGA-CA-6718-01 8 104897612 104897612 C T RIMS2 Missense_Mutation p.S262L 0.43 tolerated_low_confidence(0.09) benign(0.216) TCGA-CA-6718-01 8 104930680 104930680 G A RIMS2 Missense_Mutation p.R683Q 0.31 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-CA-6718-01 8 104955000 104955000 G T RIMS2 Splice_Site p.X850_splice 0.34 TCGA-CA-6718-01 8 107719145 107719145 G T OXR1 Nonsense_Mutation p.E467* 0.42 TCGA-CA-6718-01 8 107751728 107751728 G A OXR1 Missense_Mutation p.V695M 0.27 deleterious(0.02) benign(0.361) TCGA-CA-6718-01 8 109001376 109001376 C T RSPO2 Missense_Mutation p.R64Q 0.25 tolerated(0.07) probably_damaging(0.935) TCGA-CA-6718-01 8 109213973 109213973 A T EIF3E 3'UTR 0.39 TCGA-CA-6718-01 8 110455925 110455925 T G PKHD1L1 Missense_Mutation p.L1529V 0.16 tolerated(0.42) benign(0.001) TCGA-CA-6718-01 8 110476889 110476889 G A PKHD1L1 Missense_Mutation p.E2610K 0.31 deleterious(0.04) possibly_damaging(0.576) TCGA-CA-6718-01 8 110499007 110499007 C T PKHD1L1 Silent p.R3279R 0.23 TCGA-CA-6718-01 8 11162470 11162470 C T MTMR9 Nonsense_Mutation p.R180* 0.38 TCGA-CA-6718-01 8 113246683 113246683 G A CSMD3 Missense_Mutation p.R3551C 0.25 deleterious(0) possibly_damaging(0.856) TCGA-CA-6718-01 8 113395813 113395813 C A CSMD3 Missense_Mutation p.R2005I 0.11 deleterious(0.03) possibly_damaging(0.901) TCGA-CA-6718-01 8 113649200 113649200 A G CSMD3 Silent p.I1187I 0.49 TCGA-CA-6718-01 8 114449093 114449093 G A CSMD3 5'UTR 0.46 TCGA-CA-6718-01 8 11702657 11702657 C T CTSB Missense_Mutation p.D333N 0.27 tolerated(0.38) benign(0.003) TCGA-CA-6718-01 8 120594840 120594840 G T ENPP2 Missense_Mutation p.L568I 0.19 deleterious(0.02) possibly_damaging(0.474) TCGA-CA-6718-01 8 120608136 120608136 C A ENPP2 Missense_Mutation p.R360I 0.46 tolerated_low_confidence(0.32) benign(0.124) TCGA-CA-6718-01 8 120801091 120801091 C T TAF2 Missense_Mutation p.R541Q 0.22 deleterious(0) benign(0.28) TCGA-CA-6718-01 8 121228689 121228689 G A COL14A1 Missense_Mutation p.R566Q 0.18 deleterious(0.02) probably_damaging(0.935) TCGA-CA-6718-01 8 124121587 124121587 C T TBC1D31 Missense_Mutation p.R414C 0.31 deleterious(0) probably_damaging(0.915) TCGA-CA-6718-01 8 124371897 124371897 C A ATAD2 Nonsense_Mutation p.E396* 0.36 TCGA-CA-6718-01 8 124824996 124824996 G A FAM91A1 3'UTR 0.43 TCGA-CA-6718-01 8 124982287 124982287 G A FER1L6 Missense_Mutation p.D133N 0.23 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 8 125987892 125987893 - A ZNF572 Frame_Shift_Ins p.L7Tfs*7 0.28 TCGA-CA-6718-01 8 125987908 125987908 T C ZNF572 Missense_Mutation p.V9A 0.24 tolerated(0.05) benign(0.058) TCGA-CA-6718-01 8 12880075 12880075 T G KIAA1456 3'UTR 0.39 TCGA-CA-6718-01 8 12960349 12960349 A C DLC1 Missense_Mutation p.L506V 0.28 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 8 131127918 131127918 G A ASAP1 Nonsense_Mutation p.R710* 0.42 TCGA-CA-6718-01 8 132956991 132956991 G T EFR3A Splice_Site p.X30_splice 0.16 TCGA-CA-6718-01 8 133111156 133111156 T C HHLA1 Missense_Mutation p.N121D 0.42 deleterious(0) probably_damaging(0.984) TCGA-CA-6718-01 8 133723096 133723096 C A TMEM71 3'UTR 0.30 TCGA-CA-6718-01 8 133981808 133981808 C A TG Missense_Mutation p.S1990Y 0.47 deleterious(0) probably_damaging(0.99) TCGA-CA-6718-01 8 134474202 134474202 G T ST3GAL1 Silent p.V255V 0.16 TCGA-CA-6718-01 8 139165363 139165363 C T FAM135B Missense_Mutation p.S452N 0.34 tolerated(0.44) benign(0.021) TCGA-CA-6718-01 8 139728489 139728489 C T COL22A1 Missense_Mutation p.R815K 0.26 possibly_damaging(0.896) TCGA-CA-6718-01 8 140743410 140743410 A G TRAPPC9 Missense_Mutation p.F1212S 0.20 deleterious(0) probably_damaging(0.959) TCGA-CA-6718-01 8 141545600 141545600 G A AGO2 Silent p.F746F 0.46 TCGA-CA-6718-01 8 141716227 141716227 A C PTK2 Missense_Mutation p.N740K 0.33 tolerated(0.06) benign(0.149) TCGA-CA-6718-01 8 144416910 144416910 C T TOP1MT Missense_Mutation p.R41K 0.35 tolerated(0.4) benign(0.109) TCGA-CA-6718-01 8 144733827 144733827 T G ZNF623 3'UTR 0.42 TCGA-CA-6718-01 8 144734567 144734567 C A ZNF623 3'UTR 0.25 TCGA-CA-6718-01 8 144735728 144735728 G T ZNF623 3'UTR 0.26 TCGA-CA-6718-01 8 16850782 16850782 C A FGF20 Missense_Mutation p.E145D 0.16 deleterious(0) possibly_damaging(0.611) TCGA-CA-6718-01 8 16963070 16963070 C T MICU3 Missense_Mutation p.R412C 0.17 tolerated(0.05) possibly_damaging(0.772) TCGA-CA-6718-01 8 17157569 17157569 T G MTMR7 Silent p.S595S 0.27 TCGA-CA-6718-01 8 17406252 17406252 C A SLC7A2 Missense_Mutation p.L240I 0.20 deleterious(0.04) possibly_damaging(0.749) TCGA-CA-6718-01 8 17409284 17409284 C T SLC7A2 Missense_Mutation p.R322W 0.29 deleterious(0) probably_damaging(0.963) TCGA-CA-6718-01 8 17579355 17579355 A C MTUS1 Intron 0.26 TCGA-CA-6718-01 8 17731594 17731594 T G FGL1 Missense_Mutation p.N146H 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6718-01 8 17797351 17797351 A C PCM1 Missense_Mutation p.K255T 0.21 deleterious(0.02) possibly_damaging(0.514) TCGA-CA-6718-01 8 1806149 1806149 A C ARHGEF10 Missense_Mutation p.N21H 0.28 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-CA-6718-01 8 18258650 18258650 G T NAT2 3'UTR 0.29 TCGA-CA-6718-01 8 1853800 1853800 G A ARHGEF10 Missense_Mutation p.D629N 0.17 deleterious(0.01) probably_damaging(0.918) TCGA-CA-6718-01 8 18730203 18730203 T C PSD3 Silent p.T57T 0.14 TCGA-CA-6718-01 8 196247 196247 G A ZNF596 Missense_Mutation p.R467K 0.33 tolerated(0.08) benign(0.217) TCGA-CA-6718-01 8 19805714 19805714 G A LPL Missense_Mutation p.E38K 0.19 tolerated(0.31) benign(0.274) TCGA-CA-6718-01 8 2037969 2037969 G A MYOM2 Missense_Mutation p.E595K 0.21 deleterious(0) possibly_damaging(0.487) TCGA-CA-6718-01 8 2054354 2054354 G A MYOM2 Missense_Mutation p.G989R 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 8 2057299 2057299 G A MYOM2 Missense_Mutation p.D1053N 0.23 tolerated(0.12) probably_damaging(0.999) TCGA-CA-6718-01 8 2071143 2071143 G T MYOM2 Nonsense_Mutation p.E1158* 0.31 TCGA-CA-6718-01 8 2077195 2077195 G A MYOM2 Missense_Mutation p.E1259K 0.31 tolerated(0.08) benign(0.152) TCGA-CA-6718-01 8 21953890 21953890 T G FAM160B2 Missense_Mutation p.L56R 0.36 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 8 22006032 22006032 G A LGI3 Missense_Mutation p.R430C 0.29 deleterious(0) possibly_damaging(0.744) TCGA-CA-6718-01 8 23217702 23217702 G A LOXL2 Silent p.G144G 0.17 TCGA-CA-6718-01 8 23538898 23538898 G A NKX3-1 Nonsense_Mutation p.R181* 0.24 TCGA-CA-6718-01 8 24255199 24255199 G T ADAMDEC1 Nonsense_Mutation p.E211* 0.30 TCGA-CA-6718-01 8 24365003 24365003 G T ADAM7 Missense_Mutation p.S740I 0.27 deleterious(0.01) benign(0.328) TCGA-CA-6718-01 8 26236888 26236888 A G BNIP3L 5'Flank 0.15 TCGA-CA-6718-01 8 26248881 26248881 C A BNIP3L Missense_Mutation p.L75I 0.28 deleterious(0) possibly_damaging(0.744) TCGA-CA-6718-01 8 27321405 27321405 G A CHRNA2 Silent p.I185I 0.26 TCGA-CA-6718-01 8 27649528 27649528 G A ESCO2 Missense_Mutation p.V438M 0.54 deleterious(0) possibly_damaging(0.776) TCGA-CA-6718-01 8 2813126 2813126 A G CSMD1 Missense_Mutation p.S3327P 0.19 benign(0.003) TCGA-CA-6718-01 8 2813223 2813223 G A CSMD1 Silent p.F3294F 0.43 TCGA-CA-6718-01 8 28360413 28360413 G T FZD3 5'UTR 0.43 TCGA-CA-6718-01 8 28904886 28904886 T C HMBOX1 Missense_Mutation p.S316P 0.32 tolerated(0.35) possibly_damaging(0.785) TCGA-CA-6718-01 8 28989877 28989877 C T KIF13B Missense_Mutation p.A964T 0.23 tolerated(0.19) benign(0.043) TCGA-CA-6718-01 8 28989902 28989902 T G KIF13B Missense_Mutation p.K955N 0.29 deleterious(0) possibly_damaging(0.802) TCGA-CA-6718-01 8 29990074 29990074 T C MBOAT4 Silent p.G231G 0.11 TCGA-CA-6718-01 8 30464631 30464631 C T GTF2E2 Missense_Mutation p.D196N 0.24 tolerated(0.05) probably_damaging(0.998) TCGA-CA-6718-01 8 30695215 30695215 T G TEX15 Missense_Mutation p.K2479T 0.26 tolerated(0.05) possibly_damaging(0.711) TCGA-CA-6718-01 8 30700597 30700597 A G TEX15 Silent p.N1979N 0.27 TCGA-CA-6718-01 8 30702827 30702827 G T TEX15 Missense_Mutation p.S1236Y 0.27 tolerated(0.08) probably_damaging(0.983) TCGA-CA-6718-01 8 30703251 30703251 A C TEX15 Missense_Mutation p.Y1095D 0.27 deleterious(0.02) probably_damaging(0.925) TCGA-CA-6718-01 8 31007870 31007870 G T WRN Nonsense_Mutation p.E1196* 0.39 TCGA-CA-6718-01 8 3226817 3226817 G T CSMD1 Missense_Mutation p.S953Y 0.24 probably_damaging(0.993) TCGA-CA-6718-01 8 35583701 35583701 G A UNC5D Silent p.Q445Q 0.25 TCGA-CA-6718-01 8 3611482 3611482 G A CSMD1 Nonsense_Mutation p.R301* 0.21 TCGA-CA-6718-01 8 36675180 36675180 C A KCNU1 Silent p.V336V 0.43 TCGA-CA-6718-01 8 37823612 37823612 C T ADRB3 Missense_Mutation p.E126K 0.37 deleterious(0) possibly_damaging(0.908) TCGA-CA-6718-01 8 38125932 38125932 A C PPAPDC1B Missense_Mutation p.F77L 0.33 tolerated(0.56) benign(0.001) TCGA-CA-6718-01 8 38133164 38133164 C A WHSC1L1 Nonsense_Mutation p.E1437* 0.27 TCGA-CA-6718-01 8 38826155 38826155 G A PLEKHA2 Missense_Mutation p.A295T 0.31 deleterious(0.03) benign(0.025) TCGA-CA-6718-01 8 38874818 38874818 G A ADAM9 Missense_Mutation p.R164Q 0.43 tolerated(0.37) benign(0.023) TCGA-CA-6718-01 8 39022331 39022331 G A ADAM32 Missense_Mutation p.E215K 0.21 tolerated(0.06) possibly_damaging(0.69) TCGA-CA-6718-01 8 39604068 39604068 G A ADAM2 Silent p.F699F 0.21 TCGA-CA-6718-01 8 39840186 39840186 C A IDO2 Missense_Mutation p.L124I 0.22 tolerated(0.45) probably_damaging(0.918) TCGA-CA-6718-01 8 40012187 40012187 A G C8orf4 3'UTR 0.24 TCGA-CA-6718-01 8 40012675 40012675 T G C8orf4 3'UTR 0.20 TCGA-CA-6718-01 8 41834749 41834749 T A KAT6A Missense_Mutation p.E380D 0.17 possibly_damaging(0.599) TCGA-CA-6718-01 8 42177280 42177280 A G IKBKB Intron 0.31 TCGA-CA-6718-01 8 42256287 42256287 G T VDAC3 Nonsense_Mutation p.E60* 0.10 TCGA-CA-6718-01 8 4494949 4494949 A G CSMD1 Missense_Mutation p.S73P 0.24 possibly_damaging(0.781) TCGA-CA-6718-01 8 48694807 48694807 A C PRKDC Nonsense_Mutation p.L3801* 0.37 TCGA-CA-6718-01 8 48790384 48790384 C T PRKDC Missense_Mutation p.S1754N 0.19 probably_damaging(0.919) TCGA-CA-6718-01 8 48869805 48869805 C A PRKDC Nonsense_Mutation p.E84* 0.22 TCGA-CA-6718-01 8 53044653 53044653 G A ST18 Missense_Mutation p.A844V 0.38 deleterious(0.03) possibly_damaging(0.881) TCGA-CA-6718-01 8 53569714 53569714 A C RB1CC1 Missense_Mutation p.I892S 0.33 deleterious_low_confidence(0) benign(0.362) TCGA-CA-6718-01 8 53569980 53569980 A G RB1CC1 Silent p.V803V 0.23 TCGA-CA-6718-01 8 54142289 54142289 G A OPRK1 Silent p.I237I 0.36 TCGA-CA-6718-01 8 56436132 56436132 C T XKR4 Silent p.F433F 0.40 TCGA-CA-6718-01 8 56864540 56864540 C T LYN Missense_Mutation p.S168F 0.39 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 8 57294542 57294542 T C SDR16C6P RNA 0.28 TCGA-CA-6718-01 8 57876443 57876443 C A IMPAD1 Missense_Mutation p.G330V 0.32 tolerated(0.35) benign(0.015) TCGA-CA-6718-01 8 59059825 59059825 G A FAM110B Missense_Mutation p.E346K 0.37 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 8 61769333 61769333 T G CHD7 Silent p.L2498L 0.23 TCGA-CA-6718-01 8 62496554 62496554 A C ASPH Missense_Mutation p.F337L 0.27 deleterious(0.03) probably_damaging(0.978) TCGA-CA-6718-01 8 6372209 6372209 C A ANGPT2 Nonsense_Mutation p.E341* 0.20 TCGA-CA-6718-01 8 64098848 64098848 G T YTHDF3 Missense_Mutation p.M92I 0.21 tolerated(0.24) benign(0.329) TCGA-CA-6718-01 8 64099319 64099319 G A YTHDF3 Silent p.P249P 0.24 TCGA-CA-6718-01 8 65527679 65527679 C T CYP7B1 Missense_Mutation p.E321K 0.27 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 8 67039672 67039672 G T TRIM55 Splice_Site p.X56_splice 0.33 TCGA-CA-6718-01 8 67925200 67925200 G T PPP1R42 Missense_Mutation p.S143Y 0.62 deleterious(0) possibly_damaging(0.673) TCGA-CA-6718-01 8 68007541 68007541 G T CSPP1 Missense_Mutation p.R175I 0.23 tolerated(0.06) possibly_damaging(0.73) TCGA-CA-6718-01 8 68131790 68131790 A G ARFGEF1 Missense_Mutation p.L1405S 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 8 68995595 68995595 A C PREX2 Silent p.R667R 0.32 TCGA-CA-6718-01 8 69033230 69033230 A C PREX2 Missense_Mutation p.N1224H 0.10 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 8 69069589 69069589 G T PREX2 Missense_Mutation p.D1422Y 0.33 deleterious(0) possibly_damaging(0.751) TCGA-CA-6718-01 8 69351863 69351863 G A C8orf34 Missense_Mutation p.A153T 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-CA-6718-01 8 69434048 69434048 T G C8orf34 Missense_Mutation p.F260L 0.11 tolerated(0.15) probably_damaging(0.96) TCGA-CA-6718-01 8 70517046 70517046 T G SULF1 Missense_Mutation p.L419R 0.53 tolerated(0.05) possibly_damaging(0.596) TCGA-CA-6718-01 8 70533399 70533399 G T SULF1 Nonsense_Mutation p.E503* 0.35 TCGA-CA-6718-01 8 70540033 70540033 G T SULF1 Missense_Mutation p.K658N 0.39 deleterious(0.04) possibly_damaging(0.838) TCGA-CA-6718-01 8 72754917 72754917 T C MSC Silent p.R200R 0.14 TCGA-CA-6718-01 8 72948688 72948688 C A TRPA1 Missense_Mutation p.R797M 0.22 tolerated(0.24) benign(0.076) TCGA-CA-6718-01 8 72981383 72981383 C A TRPA1 Nonsense_Mutation p.E107* 0.12 TCGA-CA-6718-01 8 7340270 7340270 C A DEFB106B Missense_Mutation p.K18N 0.25 deleterious(0.02) possibly_damaging(0.908) TCGA-CA-6718-01 8 74939064 74939064 A C LY96 Silent p.I124I 0.29 TCGA-CA-6718-01 8 75227256 75227256 C A JPH1 Nonsense_Mutation p.E327* 0.41 TCGA-CA-6718-01 8 75928920 75928920 T G CRISPLD1 Missense_Mutation p.V283G 0.28 tolerated(0.1) benign(0.185) TCGA-CA-6718-01 8 77616927 77616927 G A ZFHX4 Missense_Mutation p.G202R 0.28 probably_damaging(0.98) TCGA-CA-6718-01 8 77617128 77617128 G C ZFHX4 Missense_Mutation p.V269L 0.37 benign(0.198) TCGA-CA-6718-01 8 77764321 77764321 T G ZFHX4 Missense_Mutation p.F1722V 0.48 possibly_damaging(0.504) TCGA-CA-6718-01 8 77766015 77766015 G T ZFHX4 Missense_Mutation p.E2286D 0.17 benign(0.399) TCGA-CA-6718-01 8 77767441 77767441 C T ZFHX4 Silent p.L2762L 0.24 TCGA-CA-6718-01 8 77767571 77767571 C T ZFHX4 Missense_Mutation p.S2805L 0.35 probably_damaging(0.975) TCGA-CA-6718-01 8 82605902 82605902 A C SLC10A5 Missense_Mutation p.F436V 0.40 tolerated_low_confidence(0.52) benign(0) TCGA-CA-6718-01 8 86124414 86124414 C A E2F5 Silent p.I302I 0.30 TCGA-CA-6718-01 8 86250508 86250508 T G CA1 Missense_Mutation p.N70H 0.26 deleterious(0.02) benign(0.107) TCGA-CA-6718-01 8 87076336 87076336 T G PSKH2 Missense_Mutation p.K237T 0.35 deleterious(0.01) benign(0.292) TCGA-CA-6718-01 8 87623878 87623878 A C CNGB3 Missense_Mutation p.Y534D 0.24 deleterious(0) possibly_damaging(0.776) TCGA-CA-6718-01 8 88885814 88885814 G T DCAF4L2 Missense_Mutation p.S129Y 0.43 deleterious(0.01) probably_damaging(0.95) TCGA-CA-6718-01 8 91095036 91095036 C T CALB1 5'UTR 0.48 TCGA-CA-6718-01 8 91643895 91643895 G A TMEM64 Missense_Mutation p.S279L 0.30 tolerated(0.27) possibly_damaging(0.725) TCGA-CA-6718-01 8 92406210 92406210 G T SLC26A7 Missense_Mutation p.E626D 0.13 tolerated(0.5) benign(0.023) TCGA-CA-6718-01 8 93004110 93004110 C A RUNX1T1 Nonsense_Mutation p.E261* 0.36 TCGA-CA-6718-01 8 94936644 94936644 C T PDP1 3'UTR 0.30 TCGA-CA-6718-01 8 95182697 95182697 C A CDH17 Missense_Mutation p.D332Y 0.45 deleterious(0) probably_damaging(0.986) TCGA-CA-6718-01 8 95479710 95479710 A T RAD54B Missense_Mutation p.F20I 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6718-01 8 95543250 95543250 C A KIAA1429 Missense_Mutation p.R183I 0.34 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 8 9562212 9562212 C T TNKS Nonsense_Mutation p.R383* 0.17 TCGA-CA-6718-01 8 96167249 96167249 T G PLEKHF2 3'UTR 0.45 TCGA-CA-6718-01 8 96276000 96276000 G T C8orf37 Nonsense_Mutation p.S53* 0.10 TCGA-CA-6718-01 8 98673342 98673342 C T MTDH Nonsense_Mutation p.R142* 0.38 TCGA-CA-6718-01 8 99718796 99718796 C A STK3 Nonsense_Mutation p.E223* 0.36 TCGA-CA-6718-01 9 100403935 100403935 T C NCBP1 Missense_Mutation p.L72P 0.35 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 9 100692952 100692952 A C HEMGN Missense_Mutation p.L242R 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-CA-6718-01 9 100693223 100693223 C A HEMGN Nonsense_Mutation p.E152* 0.31 TCGA-CA-6718-01 9 101594117 101594117 C T GALNT12 Silent p.F265F 0.24 TCGA-CA-6718-01 9 101814693 101814693 T C COL15A1 Silent p.S976S 0.23 TCGA-CA-6718-01 9 102590532 102590532 G A NR4A3 Missense_Mutation p.E81K 0.26 deleterious(0.01) benign(0.318) TCGA-CA-6718-01 9 102625905 102625905 G T NR4A3 Missense_Mutation p.R557I 0.19 deleterious(0) possibly_damaging(0.639) TCGA-CA-6718-01 9 102822384 102822384 A C ERP44 Nonsense_Mutation p.L43* 0.21 TCGA-CA-6718-01 9 103340583 103340583 G T MURC Missense_Mutation p.R53I 0.33 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 9 103348406 103348406 G T MURC Missense_Mutation p.K256N 0.37 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 9 105767972 105767972 G T CYLC2 3'UTR 0.25 TCGA-CA-6718-01 9 105767982 105767982 C T CYLC2 3'UTR 0.26 TCGA-CA-6718-01 9 107288807 107288807 C T OR13C4 Silent p.T228T 0.35 TCGA-CA-6718-01 9 107298127 107298127 G T OR13C3 Missense_Mutation p.P323H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 9 107531177 107531177 C T NIPSNAP3B Missense_Mutation p.A102V 0.29 deleterious(0) probably_damaging(0.939) TCGA-CA-6718-01 9 111624921 111624921 G A ACTL7A Missense_Mutation p.A107T 0.31 tolerated(0.23) benign(0.07) TCGA-CA-6718-01 9 112899645 112899645 C T PALM2-AKAP2 Silent p.V607V 0.30 TCGA-CA-6718-01 9 113139632 113139632 G A SVEP1 Missense_Mutation p.P3475S 0.27 probably_damaging(0.999) TCGA-CA-6718-01 9 113163151 113163151 G T SVEP1 Missense_Mutation p.P3269T 0.33 benign(0.008) TCGA-CA-6718-01 9 114304086 114304086 C A ZNF483 Missense_Mutation p.L291I 0.39 tolerated(0.41) benign(0) TCGA-CA-6718-01 9 114304654 114304654 C A ZNF483 Nonsense_Mutation p.S480* 0.38 TCGA-CA-6718-01 9 114453870 114453870 C A C9orf84 Nonsense_Mutation p.E1399* 0.24 TCGA-CA-6718-01 9 114486124 114486124 C T C9orf84 Silent p.E570E 0.29 TCGA-CA-6718-01 9 115024767 115024767 C T PTBP3 Missense_Mutation p.R189Q 0.29 deleterious(0) possibly_damaging(0.824) TCGA-CA-6718-01 9 115805456 115805456 C A ZFP37 Missense_Mutation p.R481I 0.12 tolerated(0.11) probably_damaging(0.997) TCGA-CA-6718-01 9 116276868 116276868 G A RGS3 Silent p.T536T 0.37 TCGA-CA-6718-01 9 116280 116280 T G FOXD4 3'UTR 0.08 TCGA-CA-6718-01 9 116555 116555 G C FOXD4 3'UTR 0.21 TCGA-CA-6718-01 9 117625 117625 G A FOXD4 Silent p.I165I 0.21 TCGA-CA-6718-01 9 117849553 117849553 C T TNC Splice_Site p.X153_splice 0.37 TCGA-CA-6718-01 9 117853119 117853119 A G TNC Missense_Mutation p.V60A 0.24 tolerated(0.72) benign(0.011) TCGA-CA-6718-01 9 118949881 118949881 G A PAPPA Silent p.E288E 0.62 TCGA-CA-6718-01 9 119094744 119094744 C A PAPPA Missense_Mutation p.L1132I 0.31 tolerated(0.06) benign(0.364) TCGA-CA-6718-01 9 119583060 119583060 G T ASTN2 Nonsense_Mutation p.C630* 0.44 TCGA-CA-6718-01 9 120474856 120474856 A C TLR4 Missense_Mutation p.K150N 0.41 tolerated(0.16) possibly_damaging(0.705) TCGA-CA-6718-01 9 123930415 123930415 C T CNTRL Silent p.S1962S 0.48 TCGA-CA-6718-01 9 123952956 123952956 C T RAB14 Missense_Mutation p.E54K 0.42 tolerated(0.29) possibly_damaging(0.846) TCGA-CA-6718-01 9 124088836 124088836 T C GSN Missense_Mutation p.F539S 0.33 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 9 125148748 125148748 G A PTGS1 Missense_Mutation p.E345K 0.31 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 9 125423879 125423879 T C OR1L1 5'Flank 0.20 TCGA-CA-6718-01 9 125512533 125512533 T G OR1L6 Missense_Mutation p.V136G 0.17 tolerated(0.05) benign(0.394) TCGA-CA-6718-01 9 125674261 125674261 A C ZBTB6 Missense_Mutation p.L31V 0.35 tolerated(0.06) possibly_damaging(0.817) TCGA-CA-6718-01 9 125682122 125682122 T G ZBTB26 Missense_Mutation p.K31T 0.46 tolerated(0.07) benign(0.281) TCGA-CA-6718-01 9 125946437 125946437 C A STRBP 5'UTR 0.20 TCGA-CA-6718-01 9 127999124 127999124 G T HSPA5 Missense_Mutation p.S571Y 0.43 tolerated_low_confidence(0.05) benign(0.078) TCGA-CA-6718-01 9 128510895 128510895 G T PBX3 Missense_Mutation p.E89D 0.48 deleterious(0.01) benign(0.419) TCGA-CA-6718-01 9 129645098 129645098 A C ZBTB34 3'UTR 0.23 TCGA-CA-6718-01 9 129646348 129646348 G T ZBTB34 3'UTR 0.33 TCGA-CA-6718-01 9 130488597 130488597 G T TTC16 Missense_Mutation p.A447S 0.57 tolerated(0.06) possibly_damaging(0.502) TCGA-CA-6718-01 9 130550238 130550238 A C CDK9 Missense_Mutation p.N93T 0.15 tolerated(0.06) possibly_damaging(0.457) TCGA-CA-6718-01 9 130988383 130988383 G A DNM1 Intron 0.25 TCGA-CA-6718-01 9 131072127 131072127 T C TRUB2 Missense_Mutation p.K233R 0.45 tolerated(0.18) benign(0.03) TCGA-CA-6718-01 9 13140030 13140030 A C MPDZ Missense_Mutation p.I1320S 0.21 tolerated(0.46) benign(0.006) TCGA-CA-6718-01 9 131568154 131568154 A C TBC1D13 Missense_Mutation p.K312T 0.37 deleterious(0.05) possibly_damaging(0.875) TCGA-CA-6718-01 9 131700045 131700045 T G PHYHD1 Intron 0.53 TCGA-CA-6718-01 9 131862945 131862945 G A CRAT Missense_Mutation p.R277C 0.60 deleterious(0.01) possibly_damaging(0.512) TCGA-CA-6718-01 9 13205080 13205080 A C MPDZ Missense_Mutation p.L501V 0.29 tolerated(0.4) benign(0.009) TCGA-CA-6718-01 9 132597046 132597046 C A C9orf78 Splice_Site p.X28_splice 0.32 TCGA-CA-6718-01 9 134019934 134019934 C A NUP214 Missense_Mutation p.S521Y 0.24 possibly_damaging(0.781) TCGA-CA-6718-01 9 134067623 134067623 T G NUP214 Silent p.T1201T 0.58 TCGA-CA-6718-01 9 135150724 135150724 C T SETX Missense_Mutation p.R2340Q 0.24 deleterious(0.01) probably_damaging(1) TCGA-CA-6718-01 9 135172396 135172396 C A SETX Nonsense_Mutation p.E1943* 0.14 TCGA-CA-6718-01 9 135276848 135276848 G A TTF1 Missense_Mutation p.A454V 0.33 tolerated(0.68) benign(0) TCGA-CA-6718-01 9 136320611 136320611 G A ADAMTS13 Missense_Mutation p.A1152T 0.26 tolerated(0.18) benign(0.045) TCGA-CA-6718-01 9 136342331 136342331 G A SLC2A6 Silent p.G96G 0.15 TCGA-CA-6718-01 9 137650128 137650128 G A COL5A1 Missense_Mutation p.E641K 0.16 probably_damaging(0.986) TCGA-CA-6718-01 9 138657551 138657551 C T KCNT1 Missense_Mutation p.R428W 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-CA-6718-01 9 139091581 139091581 G A LHX3 Missense_Mutation p.L138F 0.45 tolerated(0.08) benign(0.279) TCGA-CA-6718-01 9 139794946 139794946 T C TRAF2 Missense_Mutation p.W114R 0.10 deleterious(0) probably_damaging(0.973) TCGA-CA-6718-01 9 139794964 139794964 G T TRAF2 Nonsense_Mutation p.E120* 0.21 TCGA-CA-6718-01 9 140250806 140250806 A G EXD3 Missense_Mutation p.V224A 0.41 tolerated(0.33) benign(0.01) TCGA-CA-6718-01 9 140946625 140946625 G A CACNA1B Silent p.R1264R 0.32 TCGA-CA-6718-01 9 140952241 140952241 G T CACNA1B Missense_Mutation p.K1342N 0.13 deleterious(0.01) possibly_damaging(0.856) TCGA-CA-6718-01 9 14747693 14747693 C A FREM1 Missense_Mutation p.D1944Y 0.39 deleterious(0) benign(0.036) TCGA-CA-6718-01 9 15175051 15175051 T G TTC39B Missense_Mutation p.I642L 0.11 tolerated(0.65) benign(0.035) TCGA-CA-6718-01 9 15657302 15657302 G A CCDC171 Intron 0.26 TCGA-CA-6718-01 9 16436006 16436006 G A BNC2 Missense_Mutation p.S729L 0.29 deleterious(0.03) possibly_damaging(0.493) TCGA-CA-6718-01 9 16436302 16436302 C A BNC2 Missense_Mutation p.K630N 0.25 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 9 17415816 17415816 C A CNTLN Missense_Mutation p.P943T 0.24 tolerated(0.63) benign(0.002) TCGA-CA-6718-01 9 19316732 19316732 C T DENND4C Missense_Mutation p.R568C 0.39 tolerated(0.14) probably_damaging(0.968) TCGA-CA-6718-01 9 19346864 19346864 G A DENND4C Missense_Mutation p.R1317Q 0.18 tolerated(0.07) benign(0.02) TCGA-CA-6718-01 9 19786137 19786137 G T SLC24A2 Missense_Mutation p.S243Y 0.15 deleterious(0) probably_damaging(0.979) TCGA-CA-6718-01 9 19786765 19786766 - T SLC24A2 Frame_Shift_Ins p.L34Tfs*17 0.18 TCGA-CA-6718-01 9 21206643 21206643 G T IFNA10 Missense_Mutation p.L152I 0.29 deleterious(0.04) benign(0.19) TCGA-CA-6718-01 9 21239651 21239651 T C IFNA14 Missense_Mutation p.N95S 0.25 tolerated(0.38) benign(0.019) TCGA-CA-6718-01 9 21367421 21367421 C A IFNA13 3'UTR 0.32 TCGA-CA-6718-01 9 21480928 21480928 A G IFNE 3'UTR 0.43 TCGA-CA-6718-01 9 22447063 22447063 G A DMRTA1 5'UTR 0.26 TCGA-CA-6718-01 9 2643634 2643634 G A VLDLR Missense_Mutation p.R276Q 0.13 tolerated(0.6) benign(0.042) TCGA-CA-6718-01 9 27192531 27192531 G T TEK Nonsense_Mutation p.E512* 0.21 TCGA-CA-6718-01 9 27284880 27284880 G T EQTN Silent p.S242S 0.26 TCGA-CA-6718-01 9 27949138 27949138 G A LINGO2 Missense_Mutation p.A511V 0.19 tolerated(0.28) benign(0.062) TCGA-CA-6718-01 9 32450298 32450298 T G ACO1 3'UTR 0.20 TCGA-CA-6718-01 9 32630304 32630304 A G TAF1L Silent p.S1758S 0.30 TCGA-CA-6718-01 9 33387074 33387074 G T AQP7 Missense_Mutation p.S54Y 0.11 deleterious(0) probably_damaging(0.992) TCGA-CA-6718-01 9 34096729 34096729 T G DCAF12 Missense_Mutation p.E282D 0.26 deleterious(0.05) possibly_damaging(0.824) TCGA-CA-6718-01 9 34371130 34371130 C T KIAA1161 Silent p.A570A 0.37 TCGA-CA-6718-01 9 34618685 34618685 G T DCTN3 Missense_Mutation p.L57I 0.25 deleterious(0.03) possibly_damaging(0.578) TCGA-CA-6718-01 9 34724554 34724554 G T FAM205A Missense_Mutation p.L895M 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-CA-6718-01 9 34729403 34729403 G T FAM205A Missense_Mutation p.L8M 0.18 deleterious(0.03) possibly_damaging(0.584) TCGA-CA-6718-01 9 34834391 34834391 G A FAM205B RNA 0.22 TCGA-CA-6718-01 9 35062026 35062026 C T VCP Missense_Mutation p.S352N 0.32 deleterious(0.02) possibly_damaging(0.499) TCGA-CA-6718-01 9 35750696 35750696 C A RGP1 Missense_Mutation p.L99I 0.31 tolerated(0.06) probably_damaging(0.986) TCGA-CA-6718-01 9 37733486 37733486 G A FRMPD1 Missense_Mutation p.E338K 0.11 deleterious(0) probably_damaging(0.997) TCGA-CA-6718-01 9 37762653 37762653 G A TRMT10B Missense_Mutation p.R89Q 0.33 deleterious(0) probably_damaging(0.981) TCGA-CA-6718-01 9 39086811 39086811 G T CNTNAP3 Missense_Mutation p.Q1086K 0.25 tolerated(0.49) possibly_damaging(0.507) TCGA-CA-6718-01 9 40774157 40774157 C A ZNF658 Missense_Mutation p.R373I 0.32 deleterious(0) benign(0.28) TCGA-CA-6718-01 9 422057 422057 G A DOCK8 Missense_Mutation p.R1388Q 0.31 tolerated(0.11) possibly_damaging(0.869) TCGA-CA-6718-01 9 4561450 4561450 T G SLC1A1 Silent p.G78G 0.10 TCGA-CA-6718-01 9 4662028 4662028 G A SPATA6L Silent p.C16C 0.35 TCGA-CA-6718-01 9 4860138 4860138 C T RCL1 Missense_Mutation p.R329W 0.47 deleterious(0) possibly_damaging(0.9) TCGA-CA-6718-01 9 5090742 5090742 A G JAK2 Missense_Mutation p.M964V 0.17 deleterious(0) probably_damaging(0.998) TCGA-CA-6718-01 9 5126775 5126775 A G JAK2 Missense_Mutation p.D1128G 0.24 tolerated(0.17) benign(0.003) TCGA-CA-6718-01 9 5763200 5763200 C T KIAA1432 Nonsense_Mutation p.R725* 0.32 TCGA-CA-6718-01 9 5765691 5765691 C T KIAA1432 Silent p.F1010F 0.31 TCGA-CA-6718-01 9 5787076 5787076 G A ERMP1 3'UTR 0.20 TCGA-CA-6718-01 9 5897631 5897631 G A MLANA Missense_Mutation p.R51Q 0.29 deleterious(0.04) benign(0.048) TCGA-CA-6718-01 9 5919655 5919655 A C KIAA2026 3'UTR 0.39 TCGA-CA-6718-01 9 5920702 5920702 G A KIAA2026 Missense_Mutation p.S1765L 0.30 tolerated(1) benign(0.001) TCGA-CA-6718-01 9 6014543 6014543 A C RANBP6 Silent p.A355A 0.34 TCGA-CA-6718-01 9 6475442 6475442 C T UHRF2 Silent p.I305I 0.36 TCGA-CA-6718-01 9 6504628 6504628 C T UHRF2 Silent p.C733C 0.29 TCGA-CA-6718-01 9 6849543 6849543 G A KDM4C Missense_Mutation p.V158I 0.26 tolerated(1) benign(0.001) TCGA-CA-6718-01 9 69113753 69113753 G T RP11-87H9.3 5'Flank 0.15 TCGA-CA-6718-01 9 69120808 69120808 C A PGM5P2 RNA 0.19 TCGA-CA-6718-01 9 69202135 69202135 G T FOXD4L6 5'UTR 0.22 TCGA-CA-6718-01 9 71006622 71006622 T C PGM5 Silent p.A290A 0.26 TCGA-CA-6718-01 9 71396029 71396029 G T FAM122A 3'UTR 0.20 TCGA-CA-6718-01 9 71398451 71398451 G T FAM122A 3'UTR 0.30 TCGA-CA-6718-01 9 72333599 72333599 G A PTAR1 Missense_Mutation p.R317W 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 9 73376529 73376529 C A TRPM3 Missense_Mutation p.K420N 0.13 deleterious(0.01) probably_damaging(0.933) TCGA-CA-6718-01 9 74360134 74360134 T G TMEM2 Missense_Mutation p.K278N 0.23 tolerated(0.37) benign(0.001) TCGA-CA-6718-01 9 74671089 74671089 C T C9orf57 Missense_Mutation p.A83T 0.22 tolerated(0.38) possibly_damaging(0.908) TCGA-CA-6718-01 9 74675493 74675493 A G C9orf57 5'UTR 0.12 TCGA-CA-6718-01 9 77376943 77376943 C A TRPM6 Missense_Mutation p.E1548D 0.26 deleterious_low_confidence(0.03) benign(0.033) TCGA-CA-6718-01 9 77377865 77377865 C A TRPM6 Missense_Mutation p.R1241I 0.25 tolerated(0.07) benign(0.365) TCGA-CA-6718-01 9 77455128 77455128 T G TRPM6 Missense_Mutation p.K119T 0.23 deleterious(0.03) benign(0.046) TCGA-CA-6718-01 9 79118132 79118132 G A GCNT1 Missense_Mutation p.E279K 0.29 tolerated(0.22) benign(0.007) TCGA-CA-6718-01 9 79319714 79319714 A C PRUNE2 Silent p.S2492S 0.25 TCGA-CA-6718-01 9 79324905 79324905 A G PRUNE2 Missense_Mutation p.I762T 0.10 deleterious(0.02) probably_damaging(0.972) TCGA-CA-6718-01 9 85926820 85926820 C A FRMD3 Missense_Mutation p.R252I 0.17 deleterious(0) possibly_damaging(0.876) TCGA-CA-6718-01 9 86354470 86354470 T G GKAP1 3'UTR 0.38 TCGA-CA-6718-01 9 86465164 86465164 C A KIF27 Nonsense_Mutation p.E1136* 0.22 TCGA-CA-6718-01 9 86616010 86616010 G T RMI1 Nonsense_Mutation p.E37* 0.19 TCGA-CA-6718-01 9 86617158 86617158 G A RMI1 Silent p.K419K 0.17 TCGA-CA-6718-01 9 90500832 90500832 C A SPATA31E1 Missense_Mutation p.S477Y 0.14 tolerated(0.14) benign(0.257) TCGA-CA-6718-01 9 91692759 91692759 C A SHC3 Missense_Mutation p.R202I 0.36 deleterious(0.02) benign(0.157) TCGA-CA-6718-01 9 94172639 94172639 A C NFIL3 Missense_Mutation p.F126L 0.28 deleterious(0) possibly_damaging(0.472) TCGA-CA-6718-01 9 94484818 94484818 C A ROR2 3'Flank 0.32 TCGA-CA-6718-01 9 95610488 95610488 C A ZNF484 Missense_Mutation p.R196I 0.09 deleterious(0.02) benign(0.365) TCGA-CA-6718-01 9 95792188 95792188 A G FGD3 Silent p.R530R 0.33 TCGA-CA-6718-01 9 96714554 96714554 C A BARX1 Missense_Mutation p.K219N 0.27 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 9 97055306 97055306 G A ZNF169 Missense_Mutation p.E71K 0.20 tolerated(0.07) possibly_damaging(0.876) TCGA-CA-6718-01 9 99007682 99007682 G T HSD17B3 Missense_Mutation p.S184Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 9 99581473 99581473 T G ZNF782 Missense_Mutation p.N278H 0.23 deleterious(0.01) possibly_damaging(0.832) TCGA-CA-6718-01 X 100882721 100882721 A C ARMCX3 3'UTR 0.60 TCGA-CA-6718-01 X 101095827 101095827 A G NXF5 Missense_Mutation p.L174P 0.52 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 X 102841986 102841986 G T TCEAL4 Missense_Mutation p.R128I 0.58 deleterious(0.01) probably_damaging(1) TCGA-CA-6718-01 X 103494876 103494876 G T ESX1 3'UTR 0.61 TCGA-CA-6718-01 X 103497499 103497499 C T ESX1 Missense_Mutation p.A173T 0.67 deleterious(0.02) probably_damaging(0.945) TCGA-CA-6718-01 X 106186188 106186188 G T MORC4 Missense_Mutation p.L645M 0.70 deleterious(0.01) possibly_damaging(0.863) TCGA-CA-6718-01 X 106769876 106769876 C T FRMPD3 Nonsense_Mutation p.R53* 0.39 TCGA-CA-6718-01 X 109696927 109696927 T C RGAG1 Missense_Mutation p.S1028P 0.61 tolerated(0.06) benign(0.226) TCGA-CA-6718-01 X 110463593 110463593 T A PAK3 Missense_Mutation p.F554Y 0.56 deleterious(0.01) probably_damaging(0.957) TCGA-CA-6718-01 X 111019506 111019506 C T TRPC5 3'UTR 0.64 TCGA-CA-6718-01 X 114419006 114419006 C A LRCH2 Nonsense_Mutation p.E197* 0.11 TCGA-CA-6718-01 X 118717115 118717115 A C UBE2A Missense_Mutation p.N119T 0.62 tolerated(0.06) benign(0.307) TCGA-CA-6718-01 X 119389370 119389370 G A ZBTB33 3'UTR 0.08 TCGA-CA-6718-01 X 122753275 122753275 C T THOC2 Missense_Mutation p.E1430K 0.47 tolerated(0.19) benign(0.004) TCGA-CA-6718-01 X 123787483 123787483 G T TENM1 Missense_Mutation p.S440Y 0.47 deleterious(0) possibly_damaging(0.629) TCGA-CA-6718-01 X 127186018 127186018 G A ACTRT1 Silent p.F56F 0.58 TCGA-CA-6718-01 X 128696465 128696465 C A OCRL Silent p.I348I 0.54 TCGA-CA-6718-01 X 12904362 12904362 T G TLR7 Missense_Mutation p.F245L 0.82 tolerated(0.25) benign(0.047) TCGA-CA-6718-01 X 12904830 12904830 T G TLR7 Silent p.V401V 0.68 TCGA-CA-6718-01 X 1315001 1315001 C A CRLF2 Missense_Mutation p.E220D 0.31 tolerated(0.29) benign(0.027) TCGA-CA-6718-01 X 132161898 132161898 A G USP26 Silent p.S117S 0.57 TCGA-CA-6718-01 X 132351354 132351354 C T TFDP3 Missense_Mutation p.E312K 0.15 tolerated(0.09) benign(0.005) TCGA-CA-6718-01 X 133948836 133948836 G T FAM122C Missense_Mutation p.R49I 0.61 deleterious(0) benign(0.027) TCGA-CA-6718-01 X 135427197 135427197 A G GPR112 Silent p.G444G 0.50 TCGA-CA-6718-01 X 135428261 135428261 T G GPR112 Missense_Mutation p.F799C 0.11 deleterious(0) probably_damaging(0.95) TCGA-CA-6718-01 X 135485440 135485441 - A GPR112 Frame_Shift_Ins p.D2874Rfs*16 0.33 TCGA-CA-6718-01 X 135570255 135570255 G T BRS3 5'UTR 0.33 TCGA-CA-6718-01 X 135581824 135581824 C A HTATSF1 Missense_Mutation p.S85Y 0.09 deleterious(0.02) possibly_damaging(0.885) TCGA-CA-6718-01 X 135764064 135764064 T G ARHGEF6 Missense_Mutation p.T515P 0.57 deleterious(0.02) benign(0.003) TCGA-CA-6718-01 X 135772819 135772819 G A ARHGEF6 Nonsense_Mutation p.R379* 0.69 TCGA-CA-6718-01 X 13680890 13680890 A G TCEANC Missense_Mutation p.N118S 0.59 tolerated(0.34) benign(0.003) TCGA-CA-6718-01 X 13762633 13762633 C T OFD1 Missense_Mutation p.S171F 0.60 deleterious(0.01) benign(0.323) TCGA-CA-6718-01 X 138856885 138856885 A G ATP11C Missense_Mutation p.L730P 0.45 tolerated(0.13) possibly_damaging(0.811) TCGA-CA-6718-01 X 140270954 140270954 C T LDOC1 Missense_Mutation p.D85N 0.61 deleterious(0) probably_damaging(1) TCGA-CA-6718-01 X 1407431 1407431 C T CSF2RA Missense_Mutation p.S80L 0.34 tolerated(0.66) benign(0.229) TCGA-CA-6718-01 X 140969401 140969401 A G MAGEC3 Missense_Mutation p.E243G 0.67 deleterious(0) possibly_damaging(0.728) TCGA-CA-6718-01 X 140984996 140984996 G A MAGEC3 Silent p.T484T 0.74 TCGA-CA-6718-01 X 144904027 144904027 T G SLITRK2 Missense_Mutation p.I28M 0.61 tolerated(0.07) possibly_damaging(0.74) TCGA-CA-6718-01 X 1475183 1475183 G T IL3RA Missense_Mutation p.R229I 0.32 tolerated(0.5) benign(0.054) TCGA-CA-6718-01 X 148059508 148059508 T C AFF2 Silent p.D1150D 0.75 TCGA-CA-6718-01 X 1484114 1484114 C A IL3RA Missense_Mutation p.F281L 0.27 tolerated(0.79) benign(0.002) TCGA-CA-6718-01 X 148797932 148797932 G A MAGEA11 Silent p.E262E 0.61 TCGA-CA-6718-01 X 150884673 150884673 A G FATE1 Missense_Mutation p.N28D 0.52 tolerated(0.63) benign(0.182) TCGA-CA-6718-01 X 150908042 150908042 G A CNGA2 Missense_Mutation p.R71H 0.84 tolerated(0.11) benign(0.001) TCGA-CA-6718-01 X 151935510 151935510 C A MAGEA3 Missense_Mutation p.E219D 0.69 deleterious(0.04) possibly_damaging(0.546) TCGA-CA-6718-01 X 152845477 152845477 C T ATP2B3 Silent p.G1128G 0.66 TCGA-CA-6718-01 X 153035844 153035844 C A PLXNB3 Missense_Mutation p.A636D 0.58 tolerated(0.32) benign(0.005) TCGA-CA-6718-01 X 153590863 153590863 C A FLNA Missense_Mutation p.D830Y 0.64 deleterious(0.01) probably_damaging(0.988) TCGA-CA-6718-01 X 154194747 154194747 C A F8 Nonsense_Mutation p.E409* 0.13 TCGA-CA-6718-01 X 155006736 155006736 T G SPRY3 3'UTR 0.27 TCGA-CA-6718-01 X 155008213 155008213 A C SPRY3 3'UTR 0.24 TCGA-CA-6718-01 X 155009141 155009141 T G SPRY3 3'UTR 0.30 TCGA-CA-6718-01 X 15711114 15711114 A C CA5BP1 RNA 0.45 TCGA-CA-6718-01 X 1585127 1585127 A C P2RY8 Missense_Mutation p.S109A 0.30 tolerated(0.19) benign(0.078) TCGA-CA-6718-01 X 15870607 15870607 C T AP1S2 Missense_Mutation p.R14Q 0.08 deleterious(0.02) probably_damaging(0.952) TCGA-CA-6718-01 X 18183330 18183330 T C BEND2 Silent p.E733E 0.48 TCGA-CA-6718-01 X 18192232 18192232 G T BEND2 Missense_Mutation p.N633K 0.47 deleterious(0) possibly_damaging(0.625) TCGA-CA-6718-01 X 18627683 18627683 T G CDKL5 Missense_Mutation p.F715L 0.18 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-CA-6718-01 X 18800500 18800500 G T PPEF1 Nonsense_Mutation p.E248* 0.60 TCGA-CA-6718-01 X 19017137 19017137 A C GPR64 Missense_Mutation p.F864C 0.59 deleterious(0) probably_damaging(0.994) TCGA-CA-6718-01 X 19021081 19021081 G T GPR64 Missense_Mutation p.L705I 0.51 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 X 19764496 19764496 C T SH3KBP1 Missense_Mutation p.E76K 0.55 deleterious(0.04) benign(0.003) TCGA-CA-6718-01 X 21450750 21450750 A C CNKSR2 Missense_Mutation p.E83D 0.70 tolerated(0.82) benign(0.154) TCGA-CA-6718-01 X 21627418 21627418 C A CNKSR2 Missense_Mutation p.S792Y 0.43 deleterious(0.03) possibly_damaging(0.492) TCGA-CA-6718-01 X 21896685 21896685 A C MBTPS2 Missense_Mutation p.K379T 0.55 tolerated(0.55) benign(0.005) TCGA-CA-6718-01 X 23398103 23398103 G T PTCHD1 Missense_Mutation p.M249I 0.55 tolerated(0.28) benign(0) TCGA-CA-6718-01 X 24091214 24091214 A G EIF2S3 Missense_Mutation p.K397E 0.11 deleterious(0.03) benign(0.363) TCGA-CA-6718-01 X 26212723 26212723 G T MAGEB6 Nonsense_Mutation p.E254* 0.50 TCGA-CA-6718-01 X 30864160 30864160 T G TAB3 Intron 0.33 TCGA-CA-6718-01 X 30872751 30872751 C T TAB3 Missense_Mutation p.G344E 0.59 tolerated(0.29) possibly_damaging(0.558) TCGA-CA-6718-01 X 31986630 31986630 T C DMD Missense_Mutation p.E2147G 0.42 possibly_damaging(0.607) TCGA-CA-6718-01 X 3240764 3240764 G A MXRA5 Missense_Mutation p.P988S 0.58 tolerated(0.33) benign(0.216) TCGA-CA-6718-01 X 32481640 32481640 C A DMD Missense_Mutation p.K1116N 0.57 probably_damaging(0.99) TCGA-CA-6718-01 X 34147893 34147893 A C FAM47A 3'UTR 0.49 TCGA-CA-6718-01 X 34962817 34962817 T G FAM47B Silent p.T623T 0.54 TCGA-CA-6718-01 X 36117881 36117881 C T CHDC2 Missense_Mutation p.T246M 0.48 tolerated(0.11) possibly_damaging(0.773) TCGA-CA-6718-01 X 36371688 36371688 G T CXorf30 Nonsense_Mutation p.E361* 0.12 TCGA-CA-6718-01 X 36371764 36371764 G T CXorf30 Missense_Mutation p.R386I 0.63 deleterious(0.03) possibly_damaging(0.887) TCGA-CA-6718-01 X 37534928 37534928 C T LANCL3 Silent p.T375T 0.59 TCGA-CA-6718-01 X 38144952 38144952 A T RPGR Missense_Mutation p.H1100Q 0.53 unknown(0) TCGA-CA-6718-01 X 38229107 38229107 G A OTC Missense_Mutation p.R92Q 0.49 deleterious(0) possibly_damaging(0.904) TCGA-CA-6718-01 X 41064704 41064704 G A USP9X Missense_Mutation p.R1658Q 0.58 tolerated(0.29) benign(0.004) TCGA-CA-6718-01 X 41069809 41069809 A C USP9X Missense_Mutation p.E1688A 0.17 deleterious(0) probably_damaging(0.987) TCGA-CA-6718-01 X 44108120 44108120 G A EFHC2 Nonsense_Mutation p.R301* 0.61 TCGA-CA-6718-01 X 46541846 46541846 G T SLC9A7 Missense_Mutation p.F150L 0.69 tolerated(0.34) benign(0.021) TCGA-CA-6718-01 X 48047161 48047161 T G SSX5 Missense_Mutation p.K199T 0.60 tolerated(0.05) probably_damaging(0.951) TCGA-CA-6718-01 X 48125765 48125765 G T SSX1 Missense_Mutation p.E170D 0.56 deleterious(0.03) probably_damaging(0.999) TCGA-CA-6718-01 X 48207006 48207006 C A SSX3 Missense_Mutation p.R167I 0.54 deleterious(0) probably_damaging(0.999) TCGA-CA-6718-01 X 48244872 48244872 G A SSX4 Missense_Mutation p.R88Q 0.22 tolerated(0.68) benign(0.098) TCGA-CA-6718-01 X 48270301 48270301 C T SSX4B Missense_Mutation p.D26N 0.24 tolerated(0.37) benign(0.021) TCGA-CA-6718-01 X 49103250 49103250 A C CCDC22 Missense_Mutation p.Q258P 0.62 deleterious(0.02) possibly_damaging(0.832) TCGA-CA-6718-01 X 49958601 49958601 G A AKAP4 Missense_Mutation p.P255S 0.50 tolerated(0.89) benign(0.005) TCGA-CA-6718-01 X 49961557 49961557 C A AKAP4 Missense_Mutation p.K87N 0.62 tolerated(0.15) possibly_damaging(0.876) TCGA-CA-6718-01 X 53263410 53263410 G A IQSEC2 Silent p.T1486T 0.49 TCGA-CA-6718-01 X 54836153 54836153 A G MAGED2 Splice_Site p.X16_splice 0.68 TCGA-CA-6718-01 X 54949671 54949671 G T TRO Missense_Mutation p.G236C 0.66 deleterious(0) unknown(0) TCGA-CA-6718-01 X 54951127 54951127 T C TRO Silent p.L456L 0.70 TCGA-CA-6718-01 X 54985298 54985298 C A PFKFB1 Nonsense_Mutation p.E149* 0.50 TCGA-CA-6718-01 X 55250470 55250470 G T PAGE5 3'UTR 0.53 TCGA-CA-6718-01 X 5811554 5811554 C T NLGN4X Silent p.T585T 0.57 TCGA-CA-6718-01 X 595484 595484 G T SHOX Missense_Mutation p.D137Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-CA-6718-01 X 66765778 66765778 C T AR Missense_Mutation p.R264W 0.55 deleterious_low_confidence(0) probably_damaging(1) TCGA-CA-6718-01 X 69263346 69263346 C A AWAT2 Nonsense_Mutation p.E152* 0.65 TCGA-CA-6718-01 X 69397380 69397380 A C DGAT2L6 5'UTR 0.48 TCGA-CA-6718-01 X 70461100 70461100 G T ZMYM3 Missense_Mutation p.F1299L 0.70 tolerated(0.99) probably_damaging(0.987) TCGA-CA-6718-01 X 70603964 70603964 G T TAF1 Missense_Mutation p.K720N 0.58 deleterious(0) probably_damaging(0.983) TCGA-CA-6718-01 X 71521714 71521714 G T CITED1 Silent p.I173I 0.71 TCGA-CA-6718-01 X 72804306 72804306 A C CHIC1 Missense_Mutation p.K135N 0.40 deleterious(0.02) benign(0.415) TCGA-CA-6718-01 X 72900847 72900847 T G CHIC1 3'UTR 0.67 TCGA-CA-6718-01 X 74318890 74318890 C A ABCB7 Missense_Mutation p.D115Y 0.40 deleterious(0) benign(0.21) TCGA-CA-6718-01 X 74636958 74636958 C A ZDHHC15 Nonsense_Mutation p.E311* 0.66 TCGA-CA-6718-01 X 75003305 75003305 T G MAGEE2 3'UTR 0.48 TCGA-CA-6718-01 X 76814235 76814235 C T ATRX Missense_Mutation p.A2137T 0.42 possibly_damaging(0.459) TCGA-CA-6718-01 X 76952148 76952148 T G ATRX Missense_Mutation p.K96T 0.60 possibly_damaging(0.584) TCGA-CA-6718-01 X 78216587 78216587 G T P2RY10 Missense_Mutation p.M190I 0.43 tolerated(1) benign(0.002) TCGA-CA-6718-01 X 78426851 78426851 G A GPR174 Missense_Mutation p.R116Q 0.56 deleterious(0) probably_damaging(0.995) TCGA-CA-6718-01 X 78426942 78426942 C T GPR174 Silent p.C146C 0.51 TCGA-CA-6718-01 X 79699557 79699557 A G FAM46D 3'UTR 0.43 TCGA-CA-6718-01 X 79700269 79700269 A C FAM46D 3'UTR 0.45 TCGA-CA-6718-01 X 79700308 79700308 A C FAM46D 3'UTR 0.19 TCGA-CA-6718-01 X 83360882 83360882 G T RPS6KA6 Silent p.I456I 0.51 TCGA-CA-6718-01 X 83599385 83599385 G T HDX Missense_Mutation p.F511L 0.64 deleterious(0.05) probably_damaging(0.97) TCGA-CA-6718-01 X 8434238 8434238 T C VCX3B Silent p.S185S 0.28 TCGA-CA-6718-01 X 84561208 84561208 C A POF1B Missense_Mutation p.E432D 0.63 deleterious(0.03) probably_damaging(0.995) TCGA-CA-6718-01 X 8536407 8536407 G T KAL1 Missense_Mutation p.S358Y 0.62 tolerated(1) benign(0.308) TCGA-CA-6718-01 X 88009763 88009763 A T CPXCR1 3'UTR 0.50 TCGA-CA-6718-01 X 91138049 91138049 C T PCDH11X Intron 0.57 TCGA-CA-6718-01 X 92926748 92926748 G A NAP1L3 3'UTR 0.59 TCGA-CA-6718-01 X 96603243 96603243 C A DIAPH2 Missense_Mutation p.F991L 0.69 tolerated(0.11) probably_damaging(0.998) TCGA-CA-6718-01 Y 16942233 16942233 G A NLGN4Y Missense_Mutation p.E479K 0.46 tolerated(0.27) benign(0.125) TCGA-CA-6718-01 Y 4925410 4925410 G T PCDH11Y Missense_Mutation p.E182D 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6718-01 Y 4967298 4967298 T G PCDH11Y Missense_Mutation p.L560R 0.49 deleterious(0) probably_damaging(0.915) TCGA-CA-6718-01 Y 4968550 4968550 G A PCDH11Y Silent p.Q977Q 0.49 TCGA-CA-6719-01 10 104899211 104899211 T C NT5C2 Missense_Mutation p.M43V 0.42 deleterious(0.02) benign(0.011) TCGA-CA-6719-01 10 134161585 134161585 T C LRRC27 Silent p.A217A 0.09 TCGA-CA-6719-01 10 134722049 134722049 C T TTC40 Silent p.A949A 0.09 TCGA-CA-6719-01 10 16967310 16967310 A G CUBN Silent p.F2192F 0.49 TCGA-CA-6719-01 10 45878104 45878104 C T ALOX5 Silent p.V108V 0.86 TCGA-CA-6719-01 10 46999969 46999969 C - GPRIN2 Frame_Shift_Del p.P364Qfs*3 0.20 TCGA-CA-6719-01 10 54076473 54076473 G A DKK1 Missense_Mutation p.R236H 0.14 deleterious(0) probably_damaging(0.999) TCGA-CA-6719-01 10 63809126 63809126 G A ARID5B Intron 0.49 TCGA-CA-6719-01 11 113266902 113266902 C T ANKK1 Missense_Mutation p.R266C 0.49 tolerated(0.06) benign(0.02) TCGA-CA-6719-01 11 125660445 125660445 G A PATE3 Missense_Mutation p.R82Q 0.42 tolerated(0.1) probably_damaging(0.977) TCGA-CA-6719-01 11 43464890 43464890 A G TTC17 Missense_Mutation p.E756G 0.13 tolerated(0.16) possibly_damaging(0.585) TCGA-CA-6719-01 11 44931425 44931425 G A TSPAN18 Missense_Mutation p.R78H 0.42 deleterious(0.01) probably_damaging(0.973) TCGA-CA-6719-01 11 47469637 47469637 G A RAPSN Silent p.Y86Y 0.31 TCGA-CA-6719-01 11 55579545 55579545 G T OR5L1 Silent p.L201L 0.15 TCGA-CA-6719-01 11 57456012 57456012 C T ZDHHC5 Nonsense_Mutation p.R87* 0.31 TCGA-CA-6719-01 11 62400042 62400042 C T GANAB Missense_Mutation p.G353R 0.35 tolerated(0.48) benign(0.263) TCGA-CA-6719-01 11 76371975 76371975 C T LRRC32 Missense_Mutation p.R221Q 0.29 tolerated(0.74) benign(0.003) TCGA-CA-6719-01 12 106460951 106460951 C A NUAK1 Missense_Mutation p.A539S 0.48 tolerated(0.64) benign(0.012) TCGA-CA-6719-01 12 110345399 110345399 G A TCHP Silent p.A198A 0.45 TCGA-CA-6719-01 12 111750004 111750004 C T CUX2 Silent p.G667G 0.47 TCGA-CA-6719-01 12 117653006 117653006 G A NOS1 3'Flank 0.86 TCGA-CA-6719-01 12 121154713 121154713 C T UNC119B Missense_Mutation p.R171W 0.09 deleterious(0.01) probably_damaging(1) TCGA-CA-6719-01 12 124856837 124856837 G A NCOR2 Silent p.P846P 0.22 TCGA-CA-6719-01 12 41831719 41831719 G T PDZRN4 Intron 0.52 TCGA-CA-6719-01 12 50037069 50037069 C T PRPF40B Missense_Mutation p.R757W 0.35 tolerated(0.05) possibly_damaging(0.835) TCGA-CA-6719-01 12 98995306 98995306 G A SLC25A3 Silent p.%3D 0.36 TCGA-CA-6719-01 13 110436619 110436619 C T IRS2 Silent p.S594S 0.21 TCGA-CA-6719-01 13 114780772 114780772 C T RASA3 Missense_Mutation p.A440T 0.31 tolerated(0.29) benign(0.354) TCGA-CA-6719-01 13 37621724 37621724 T C SUPT20H Missense_Mutation p.Q38R 0.31 deleterious(0) benign(0.339) TCGA-CA-6719-01 13 38320367 38320367 C T TRPC4 Missense_Mutation p.A202T 0.24 deleterious(0.01) probably_damaging(1) TCGA-CA-6719-01 14 24629523 24629523 A G RNF31 Silent p.E1024E 0.12 TCGA-CA-6719-01 14 51237125 51237125 C T NIN Missense_Mutation p.R472H 0.35 tolerated(0.31) probably_damaging(0.999) TCGA-CA-6719-01 14 53560136 53560136 T A DDHD1 Missense_Mutation p.N347Y 0.06 tolerated(0.76) benign(0.017) TCGA-CA-6719-01 14 76965218 76965218 T C ESRRB Intron 0.10 TCGA-CA-6719-01 15 30659679 30659679 G A CHRFAM7A Missense_Mutation p.T221M 0.66 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 15 42211689 42211689 C T EHD4 Missense_Mutation p.D215N 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-CA-6719-01 15 71143910 71143910 A G LARP6 Intron 0.09 TCGA-CA-6719-01 15 72104149 72104149 C T NR2E3 RNA 0.34 TCGA-CA-6719-01 15 75942203 75942203 C A SNX33 Missense_Mutation p.L254I 0.67 tolerated(0.08) benign(0.069) TCGA-CA-6719-01 16 335096 335096 C T PDIA2 Missense_Mutation p.R231W 0.35 deleterious(0.03) benign(0.329) TCGA-CA-6719-01 16 58565914 58565914 A G CNOT1 Missense_Mutation p.I2042T 0.09 deleterious(0) probably_damaging(0.944) TCGA-CA-6719-01 16 84067042 84067042 C T SLC38A8 Missense_Mutation p.A141T 0.23 tolerated(0.24) benign(0.005) TCGA-CA-6719-01 17 17700713 17700713 C A RAI1 Missense_Mutation p.T1484K 0.20 tolerated(0.89) benign(0.021) TCGA-CA-6719-01 17 34340265 34340265 T C CCL23 Missense_Mutation p.D129G 0.08 tolerated(0.48) benign(0.006) TCGA-CA-6719-01 17 34866662 34866662 C T MYO19 Silent p.Q360Q 0.14 TCGA-CA-6719-01 17 38179477 38179478 - A MED24 Frame_Shift_Ins p.E720Gfs*14 0.33 TCGA-CA-6719-01 17 39471774 39471774 G A KRTAP17-1 Silent p.C43C 0.67 TCGA-CA-6719-01 17 39577726 39577726 G A KRT37 Silent p.A378A 0.49 TCGA-CA-6719-01 17 6524251 6524251 C T KIAA0753 Missense_Mutation p.R391Q 0.71 tolerated(1) benign(0.003) TCGA-CA-6719-01 17 7576852 7576852 C A TP53 Splice_Site p.X331_splice 0.62 TCGA-CA-6719-01 18 21712560 21712560 G A TTC39C 3'UTR 0.47 TCGA-CA-6719-01 18 670835 670835 A G TYMS Missense_Mutation p.T234A 0.36 deleterious(0.04) possibly_damaging(0.555) TCGA-CA-6719-01 18 688592 688592 A G ENOSF1 Missense_Mutation p.L233P 0.15 deleterious(0) possibly_damaging(0.783) TCGA-CA-6719-01 18 72347660 72347660 C T ZNF407 Missense_Mutation p.T1562I 0.41 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 19 36206111 36206111 C T ZBTB32 Missense_Mutation p.R195C 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.689) TCGA-CA-6719-01 19 39734787 39734787 C T IFNL3 Missense_Mutation p.R90H 0.57 deleterious(0.03) possibly_damaging(0.812) TCGA-CA-6719-01 19 47774794 47774794 G A CCDC9 Silent p.T485T 0.16 TCGA-CA-6719-01 19 48305146 48305146 C T TPRX1 Silent p.Q374Q 0.37 TCGA-CA-6719-01 19 50411827 50411827 A G NUP62 Missense_Mutation p.L413S 0.09 tolerated(1) benign(0.001) TCGA-CA-6719-01 19 54848763 54848763 C T LILRA4 Missense_Mutation p.R287H 0.25 tolerated(0.5) benign(0.059) TCGA-CA-6719-01 19 57722757 57722757 A G ZNF264 Missense_Mutation p.T98A 0.43 tolerated(0.76) benign(0.001) TCGA-CA-6719-01 19 57764521 57764521 C T ZNF805 Silent p.L112L 0.32 TCGA-CA-6719-01 19 9062116 9062116 C T MUC16 Missense_Mutation p.A8444T 0.41 unknown(0) TCGA-CA-6719-01 1 101440477 101440477 C T SLC30A7 Intron 0.40 TCGA-CA-6719-01 1 10211619 10211619 G A UBE4B Missense_Mutation p.D976N 0.39 deleterious(0) probably_damaging(0.986) TCGA-CA-6719-01 1 104297162 104297162 C T AMY1C Missense_Mutation p.A307V 0.09 tolerated(0.09) benign(0.158) TCGA-CA-6719-01 1 110050503 110050503 C T AMIGO1 Missense_Mutation p.M344I 0.11 tolerated(0.43) benign(0) TCGA-CA-6719-01 1 14925518 14925518 G A KAZN Missense_Mutation p.A9T 0.22 deleterious(0) possibly_damaging(0.821) TCGA-CA-6719-01 1 158533112 158533112 C T OR6P1 Missense_Mutation p.V95I 0.23 tolerated(0.29) benign(0.002) TCGA-CA-6719-01 1 166039590 166039590 C T FAM78B Missense_Mutation p.R225Q 0.38 tolerated(0.43) benign(0.23) TCGA-CA-6719-01 1 175293536 175293536 G A TNR Missense_Mutation p.R1305W 0.51 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 1 179311253 179311253 G A SOAT1 Missense_Mutation p.R262H 0.20 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 1 181721339 181721339 G A CACNA1E Silent p.R1264R 0.13 TCGA-CA-6719-01 1 181740519 181740519 A T CACNA1E Missense_Mutation p.R1658W 0.51 deleterious(0) possibly_damaging(0.892) TCGA-CA-6719-01 1 203008247 203008247 G A PPFIA4 Silent p.R37R 0.40 TCGA-CA-6719-01 1 225567980 225567980 T C DNAH14 Missense_Mutation p.M3169T 0.44 deleterious(0.02) benign(0.002) TCGA-CA-6719-01 1 40363096 40363096 C T MYCL Missense_Mutation p.R378Q 0.32 tolerated(0.18) benign(0.091) TCGA-CA-6719-01 1 71532573 71532573 C A ZRANB2 Missense_Mutation p.R272I 0.48 tolerated_low_confidence(0.14) unknown(0) TCGA-CA-6719-01 1 78395002 78395002 T C NEXN Missense_Mutation p.V289A 0.22 tolerated(0.39) benign(0.001) TCGA-CA-6719-01 20 13868464 13868464 T C SEL1L2 Silent p.L232L 0.15 TCGA-CA-6719-01 20 33500951 33500951 G A ACSS2 Missense_Mutation p.V143I 0.32 deleterious(0.04) benign(0.003) TCGA-CA-6719-01 20 55748260 55748260 G A BMP7 Missense_Mutation p.T381M 0.38 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 20 62198705 62198705 G A HELZ2 Missense_Mutation p.A669V 0.14 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 20 62680552 62680552 C A SOX18 Missense_Mutation p.Q106H 0.33 deleterious(0) benign(0) TCGA-CA-6719-01 21 17250625 17250625 A G USP25 Missense_Mutation p.H1000R 0.19 tolerated(0.15) benign(0.002) TCGA-CA-6719-01 21 45825083 45825083 A G TRPM2 Missense_Mutation p.D866G 0.11 deleterious(0) possibly_damaging(0.861) TCGA-CA-6719-01 2 164466935 164466935 G A FIGN Silent p.I469I 0.49 TCGA-CA-6719-01 2 175436272 175436272 T C WIPF1 Intron 0.10 TCGA-CA-6719-01 2 21230269 21230269 G T APOB Silent p.G3157G 0.41 TCGA-CA-6719-01 2 216214327 216214327 C T ATIC Silent p.D576D 0.50 TCGA-CA-6719-01 2 216259329 216259329 C T FN1 Missense_Mutation p.G1240S 0.26 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 2 222321470 222321470 C G EPHA4 Missense_Mutation p.R489P 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-CA-6719-01 2 228566960 228566961 - A SLC19A3 Frame_Shift_Ins p.S26Lfs*19 0.20 TCGA-CA-6719-01 2 242187451 242187451 G T HDLBP Nonsense_Mutation p.C566* 0.43 TCGA-CA-6719-01 2 54873102 54873102 C T SPTBN1 Missense_Mutation p.T1511M 0.31 tolerated(0.08) benign(0.298) TCGA-CA-6719-01 2 55467249 55467249 C T MTIF2 Missense_Mutation p.G590R 0.42 tolerated(0.08) benign(0.211) TCGA-CA-6719-01 2 84517888 84517888 G A FUNDC2P2 RNA 0.15 TCGA-CA-6719-01 3 112080536 112080536 C G CD200 3'UTR 0.24 TCGA-CA-6719-01 3 113389024 113389024 T G KIAA2018 Missense_Mutation p.N35H 0.39 probably_damaging(1) TCGA-CA-6719-01 3 119128498 119128498 G T ARHGAP31 Nonsense_Mutation p.E601* 0.08 TCGA-CA-6719-01 3 120500198 120500198 C T GTF2E1 Missense_Mutation p.R401C 0.48 tolerated(0.06) benign(0.002) TCGA-CA-6719-01 3 121415909 121415909 G T GOLGB1 Missense_Mutation p.P1154Q 0.18 possibly_damaging(0.73) TCGA-CA-6719-01 3 183884284 183884284 A G DVL3 Silent p.V318V 0.16 TCGA-CA-6719-01 3 37067243 37067243 G A MLH1 Missense_Mutation p.R385H 0.43 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 3 44496780 44496780 C T ZNF445 Missense_Mutation p.V88I 0.52 tolerated(0.26) benign(0.312) TCGA-CA-6719-01 3 45977986 45977986 C T FYCO1 Missense_Mutation p.V1332M 0.61 tolerated(0.37) benign(0.013) TCGA-CA-6719-01 3 87027953 87027953 C T VGLL3 Splice_Site p.X43_splice 0.31 TCGA-CA-6719-01 4 3208338 3208338 G A HTT Missense_Mutation p.R1945Q 0.26 probably_damaging(0.998) TCGA-CA-6719-01 4 36069773 36069773 C T ARAP2 Missense_Mutation p.R1624Q 0.53 tolerated(0.17) benign(0.018) TCGA-CA-6719-01 4 55981047 55981047 C T KDR Missense_Mutation p.V218I 0.54 tolerated(0.57) benign(0.069) TCGA-CA-6719-01 5 13753479 13753479 G T DNAH5 Missense_Mutation p.Q3579K 0.09 benign(0.149) TCGA-CA-6719-01 5 137713466 137713466 G T KDM3B Missense_Mutation p.V178F 0.31 tolerated(0.22) benign(0.047) TCGA-CA-6719-01 5 139218291 139218291 C T PSD2 Silent p.A634A 0.22 TCGA-CA-6719-01 5 140182171 140182171 C T PCDHA3 Silent p.F463F 0.25 TCGA-CA-6719-01 5 140256490 140256490 C T PCDHA12 Missense_Mutation p.S478L 0.34 deleterious_low_confidence(0.02) benign(0.358) TCGA-CA-6719-01 5 140306634 140306634 C T PCDHAC1 Missense_Mutation p.R53W 0.21 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 5 141019731 141019731 C T RELL2 Missense_Mutation p.R250C 0.26 tolerated_low_confidence(0.25) benign(0) TCGA-CA-6719-01 5 169310419 169310419 G A FAM196B Nonsense_Mutation p.R162* 0.32 TCGA-CA-6719-01 5 26890672 26890672 A G CDH9 Missense_Mutation p.Y419H 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-CA-6719-01 5 40852698 40852698 G A CARD6 Missense_Mutation p.G422R 0.35 tolerated(0.05) benign(0.046) TCGA-CA-6719-01 5 5235251 5235251 C T ADAMTS16 Nonsense_Mutation p.R659* 0.26 TCGA-CA-6719-01 5 66478891 66478891 C A CD180 Nonsense_Mutation p.E594* 0.08 TCGA-CA-6719-01 5 90678738 90678739 - T ARRDC3 Frame_Shift_Ins p.R58Tfs*4 0.08 TCGA-CA-6719-01 6 100897474 100897474 G A SIM1 Silent p.F150F 0.53 TCGA-CA-6719-01 6 129475656 129475656 A G LAMA2 Missense_Mutation p.N345S 0.79 deleterious(0.01) probably_damaging(0.998) TCGA-CA-6719-01 6 130465694 130465694 C T SAMD3 Missense_Mutation p.E512K 0.13 tolerated_low_confidence(0.2) benign(0.003) TCGA-CA-6719-01 6 159636160 159636160 G A FNDC1 Missense_Mutation p.R215Q 0.25 tolerated(0.12) unknown(0) TCGA-CA-6719-01 6 27776133 27776133 C T HIST1H2AI Missense_Mutation p.P49L 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.902) TCGA-CA-6719-01 6 29627296 29627296 C T MOG Missense_Mutation p.R97W 0.17 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 6 32976086 32976086 G T HLA-DOA Intron 0.31 TCGA-CA-6719-01 6 33236354 33236354 G A VPS52 Silent p.A207A 0.19 TCGA-CA-6719-01 6 46849789 46849789 A G GPR116 Missense_Mutation p.F223S 0.10 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 6 49519334 49519334 A G C6orf141 3'UTR 0.18 TCGA-CA-6719-01 6 4999033 4999033 G T RPP40 Missense_Mutation p.S159Y 0.15 deleterious(0.02) probably_damaging(0.966) TCGA-CA-6719-01 6 52334207 52334208 - A EFHC1 Frame_Shift_Ins p.D408Rfs*4 0.29 TCGA-CA-6719-01 6 90718396 90718396 G A BACH2 Silent p.A56A 0.13 TCGA-CA-6719-01 7 100482899 100482899 G A SRRT Missense_Mutation p.G409R 0.32 tolerated(0.13) benign(0.119) TCGA-CA-6719-01 7 107542790 107542790 T G DLD Missense_Mutation p.N73K 0.16 deleterious(0) benign(0.31) TCGA-CA-6719-01 7 120655853 120655853 C T CPED1 Silent p.I128I 0.32 TCGA-CA-6719-01 7 1477570 1477570 G A MICALL2 Silent p.H786H 0.25 TCGA-CA-6719-01 7 154667727 154667727 C T DPP6 Silent p.S665S 0.13 TCGA-CA-6719-01 7 80439999 80439999 C T SEMA3C Missense_Mutation p.D156N 0.57 deleterious(0.04) possibly_damaging(0.593) TCGA-CA-6719-01 7 81350145 81350145 C A HGF Missense_Mutation p.G396V 0.06 deleterious(0) probably_damaging(1) TCGA-CA-6719-01 7 86574345 86574345 C T KIAA1324L Missense_Mutation p.R175H 0.45 tolerated(0.18) benign(0.008) TCGA-CA-6719-01 8 100789166 100789166 C A VPS13B Missense_Mutation p.L2496I 0.14 tolerated(0.08) possibly_damaging(0.636) TCGA-CA-6719-01 8 110394691 110394691 G A PKHD1L1 Splice_Site p.X103_splice 0.19 TCGA-CA-6719-01 8 116617157 116617157 G A TRPS1 Missense_Mutation p.R347C 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CA-6719-01 8 16973969 16973969 G A MICU3 Missense_Mutation p.V462I 0.10 deleterious(0) possibly_damaging(0.88) TCGA-CA-6719-01 8 41552771 41552771 G A ANK1 Silent p.N1054N 0.09 TCGA-CA-6719-01 8 52321782 52321782 C T PXDNL Missense_Mutation p.R801H 0.16 tolerated(1) benign(0) TCGA-CA-6719-01 8 55370965 55370965 G A SOX17 Silent p.Q89Q 0.53 TCGA-CA-6719-01 8 55534724 55534724 G A RP1 Silent p.A221A 0.50 TCGA-CA-6719-01 8 59409379 59409379 G A CYP7A1 Missense_Mutation p.A231V 0.34 deleterious(0.01) probably_damaging(0.973) TCGA-CA-6719-01 8 70964515 70964515 G A PRDM14 Missense_Mutation p.R505C 0.15 deleterious(0.03) benign(0.165) TCGA-CA-6719-01 9 113341742 113341742 G A SVEP1 Missense_Mutation p.R28C 0.26 possibly_damaging(0.517) TCGA-CA-6719-01 9 123776268 123776268 G A C5 Nonsense_Mutation p.R714* 0.48 TCGA-CA-6719-01 9 125563017 125563017 G A OR1K1 Missense_Mutation p.A206T 0.25 tolerated(0.07) possibly_damaging(0.777) TCGA-CA-6719-01 9 21968131 21968131 C T CDKN2A 3'UTR 0.25 TCGA-CA-6719-01 9 5066787 5066787 G A JAK2 Missense_Mutation p.E442K 0.50 tolerated(0.17) possibly_damaging(0.542) TCGA-CA-6719-01 9 66466193 66466193 T A RP11-262H14.1 RNA 0.10 TCGA-CA-6719-01 9 710977 710977 G T KANK1 Missense_Mutation p.V71L 0.56 tolerated(0.36) benign(0.003) TCGA-CA-6719-01 9 71861530 71861530 A G TJP2 Intron 0.21 TCGA-CA-6719-01 X 102508591 102508591 G A TCEAL8 Missense_Mutation p.S106L 0.75 deleterious(0) probably_damaging(0.976) TCGA-CA-6719-01 X 107407921 107407921 T C COL4A6 Silent p.R1327R 0.13 TCGA-CA-6719-01 X 37587111 37587111 A G XK Missense_Mutation p.N244S 0.87 deleterious(0.04) probably_damaging(0.996) TCGA-CA-6719-01 X 56310823 56310823 C T KLF8 Missense_Mutation p.R326C 0.10 deleterious(0) probably_damaging(0.95) TCGA-CK-4947-01 10 102035079 102035079 G A BLOC1S2 3'UTR 0.21 TCGA-CK-4947-01 10 114925315 114925316 - G TCF7L2 Frame_Shift_Ins p.C469Vfs*8 0.35 TCGA-CK-4947-01 10 125426445 125426445 C T GPR26 Silent p.G174G 0.10 TCGA-CK-4947-01 10 128202503 128202503 G A C10orf90 Missense_Mutation p.R10W 0.27 deleterious(0.04) possibly_damaging(0.649) TCGA-CK-4947-01 10 30318027 30318027 C T KIAA1462 Silent p.P350P 0.32 TCGA-CK-4947-01 10 90770546 90770546 T C FAS Missense_Mutation p.L181P 0.32 tolerated(0.08) benign(0.03) TCGA-CK-4947-01 11 103907742 103907742 C T PDGFD Intron 0.32 TCGA-CK-4947-01 11 104034724 104034724 G A PDGFD 5'UTR 0.56 TCGA-CK-4947-01 11 108236153 108236153 G T ATM Missense_Mutation p.G3030V 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4947-01 11 1316949 1316949 C T TOLLIP Missense_Mutation p.A37T 0.31 tolerated(0.31) benign(0.102) TCGA-CK-4947-01 11 18369111 18369111 T A GTF2H1 Intron 0.34 TCGA-CK-4947-01 11 46911974 46911974 C T LRP4 Missense_Mutation p.R590H 0.41 tolerated(0.06) possibly_damaging(0.479) TCGA-CK-4947-01 11 5011928 5011928 C G MMP26 Missense_Mutation p.Q141E 0.27 tolerated(0.07) benign(0.022) TCGA-CK-4947-01 11 55735219 55735219 A T OR10AG1 Missense_Mutation p.L241I 0.09 deleterious(0.01) possibly_damaging(0.866) TCGA-CK-4947-01 11 57182166 57182166 C T SLC43A3 Missense_Mutation p.G328R 0.38 deleterious(0) probably_damaging(0.993) TCGA-CK-4947-01 11 88258524 88258524 G T GRM5 Missense_Mutation p.F893L 0.28 tolerated_low_confidence(0.2) benign(0) TCGA-CK-4947-01 11 89075363 89075363 T C NOX4 Splice_Site p.X406_splice 0.30 TCGA-CK-4947-01 11 92531376 92531376 C T FAT3 Missense_Mutation p.R1733C 0.30 benign(0.003) TCGA-CK-4947-01 12 104390524 104390524 C T GLT8D2 Missense_Mutation p.V197M 0.09 tolerated(0.12) possibly_damaging(0.888) TCGA-CK-4947-01 12 10525774 10525774 T G KLRK1 Missense_Mutation p.K197T 0.29 tolerated(0.16) possibly_damaging(0.75) TCGA-CK-4947-01 12 119559919 119559919 A C SRRM4 Missense_Mutation p.K170T 0.07 deleterious_low_confidence(0) unknown(0) TCGA-CK-4947-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.31 deleterious(0.02) possibly_damaging(0.773) TCGA-CK-4947-01 12 49073591 49073591 G A KANSL2 Missense_Mutation p.R93C 0.30 deleterious(0) probably_damaging(0.953) TCGA-CK-4947-01 12 49088182 49088182 C T CCNT1 Missense_Mutation p.R272Q 0.32 tolerated(1) benign(0.008) TCGA-CK-4947-01 12 5154013 5154013 C T KCNA5 Missense_Mutation p.R234C 0.30 deleterious(0) probably_damaging(0.987) TCGA-CK-4947-01 12 52579280 52579280 A G KRT80 Missense_Mutation p.L131P 0.08 deleterious(0) possibly_damaging(0.863) TCGA-CK-4947-01 12 57081842 57081842 T A PTGES3 5'UTR 0.35 TCGA-CK-4947-01 12 88379766 88379766 C T C12orf50 Silent p.A329A 0.26 TCGA-CK-4947-01 13 52345967 52345967 G A DHRS12 Silent p.A232A 0.19 TCGA-CK-4947-01 14 105517924 105517924 C T GPR132 Missense_Mutation p.E184K 0.40 tolerated(0.89) benign(0.012) TCGA-CK-4947-01 14 91007797 91007797 G A TTC7B Missense_Mutation p.A816V 0.40 deleterious(0.01) possibly_damaging(0.706) TCGA-CK-4947-01 14 91700820 91700820 A G GPR68 Missense_Mutation p.V192A 0.10 tolerated(0.41) benign(0.192) TCGA-CK-4947-01 15 35045326 35045326 G A GJD2 Missense_Mutation p.R107C 0.09 deleterious(0.01) probably_damaging(0.939) TCGA-CK-4947-01 15 42147932 42147932 C T SPTBN5 Silent p.A3011A 0.16 TCGA-CK-4947-01 15 84488580 84488582 AGA - ADAMTSL3 In_Frame_Del p.E128del 0.12 TCGA-CK-4947-01 16 2011826 2011826 C A NDUFB10 Silent p.A146A 0.28 TCGA-CK-4947-01 16 48125032 48125032 G A ABCC12 Missense_Mutation p.S1095L 0.28 tolerated(0.31) benign(0.001) TCGA-CK-4947-01 16 5053536 5053536 G A SEC14L5 Missense_Mutation p.V422M 0.38 tolerated(0.05) possibly_damaging(0.893) TCGA-CK-4947-01 16 57447792 57447792 T C CCL17 5'UTR 0.10 TCGA-CK-4947-01 16 61687969 61687969 T A CDH8 Missense_Mutation p.K648I 0.23 deleterious(0) probably_damaging(0.998) TCGA-CK-4947-01 16 67688412 67688412 C T RLTPR Silent p.G1133G 0.22 TCGA-CK-4947-01 16 70680875 70680875 C T IL34 Missense_Mutation p.R9C 0.38 tolerated(0.17) possibly_damaging(0.711) TCGA-CK-4947-01 16 77227419 77227419 C T MON1B Missense_Mutation p.R74W 0.21 deleterious(0.01) benign(0.296) TCGA-CK-4947-01 16 87678070 87678070 G A JPH3 Missense_Mutation p.V197M 0.34 deleterious(0) probably_damaging(0.993) TCGA-CK-4947-01 17 10535049 10535049 G T MYH3 Missense_Mutation p.T1722N 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-CK-4947-01 17 33875368 33875368 A C SLFN14 Missense_Mutation p.F877V 0.27 deleterious(0) probably_damaging(0.998) TCGA-CK-4947-01 17 42428524 42428524 G A GRN Silent p.A276A 0.22 TCGA-CK-4947-01 17 56557330 56557330 T C HSF5 Silent p.Q283Q 0.26 TCGA-CK-4947-01 17 70117935 70117935 C T SOX9 Missense_Mutation p.L135F 0.30 deleterious(0) possibly_damaging(0.543) TCGA-CK-4947-01 17 70120345 70120346 - TCCT SOX9 Frame_Shift_Ins p.Y451Ffs*128 0.49 TCGA-CK-4947-01 17 78333931 78333931 G A RNF213 Missense_Mutation p.V3709I 0.26 benign(0.067) TCGA-CK-4947-01 17 8198004 8198004 C A SLC25A35 Missense_Mutation p.R41L 0.26 tolerated(0.18) possibly_damaging(0.834) TCGA-CK-4947-01 18 24497297 24497297 C T CHST9 Missense_Mutation p.M86I 0.54 tolerated(0.44) benign(0) TCGA-CK-4947-01 18 76754849 76754849 G A SALL3 Missense_Mutation p.R953H 0.77 tolerated(0.08) probably_damaging(0.962) TCGA-CK-4947-01 19 3207446 3207446 C T NCLN Silent p.G537G 0.24 TCGA-CK-4947-01 19 37368381 37368381 C T ZNF345 Missense_Mutation p.L217F 0.34 deleterious(0.02) probably_damaging(0.992) TCGA-CK-4947-01 19 38380396 38380396 G A WDR87 Silent p.N1266N 0.24 TCGA-CK-4947-01 19 44103172 44103172 G A ZNF576 Missense_Mutation p.S92N 0.30 deleterious(0.03) benign(0.185) TCGA-CK-4947-01 19 4705934 4705934 G T DPP9 Missense_Mutation p.P121H 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-4947-01 19 58067559 58067559 G A ZNF550 Intron 0.23 TCGA-CK-4947-01 19 8996389 8996389 C A MUC16 Missense_Mutation p.S13728I 0.29 probably_damaging(0.999) TCGA-CK-4947-01 1 101004745 101004745 G A GPR88 Missense_Mutation p.A75T 0.18 tolerated(0.27) possibly_damaging(0.685) TCGA-CK-4947-01 1 113238080 113238080 C G MOV10 Missense_Mutation p.P555A 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-CK-4947-01 1 118486212 118486212 C G WDR3 Missense_Mutation p.L431V 0.36 tolerated(0.26) possibly_damaging(0.606) TCGA-CK-4947-01 1 157667790 157667790 C T FCRL3 Intron 0.35 TCGA-CK-4947-01 1 16053832 16053832 A G PLEKHM2 Missense_Mutation p.D422G 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-4947-01 1 166926048 166926048 C T ILDR2 Missense_Mutation p.G141R 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4947-01 1 171535401 171535401 C T PRRC2C Silent p.L2047L 0.26 TCGA-CK-4947-01 1 197390644 197390644 C A CRB1 Silent p.T562T 0.22 TCGA-CK-4947-01 1 205277746 205277746 A G NUAK2 Missense_Mutation p.F156S 0.28 deleterious(0.01) probably_damaging(1) TCGA-CK-4947-01 1 225445679 225445679 A G DNAH14 Missense_Mutation p.N2289D 0.28 benign(0) TCGA-CK-4947-01 1 228612922 228612922 G A HIST3H3 Silent p.G35G 0.30 TCGA-CK-4947-01 1 248402931 248402931 G A OR2M4 Missense_Mutation p.R234H 0.33 tolerated(0.1) benign(0.036) TCGA-CK-4947-01 1 248616140 248616140 C A OR2T2 Silent p.V14V 0.13 TCGA-CK-4947-01 1 36814310 36814310 C T STK40 Missense_Mutation p.V244M 0.34 deleterious(0) probably_damaging(0.989) TCGA-CK-4947-01 1 64643216 64643216 G A ROR1 Missense_Mutation p.D498N 0.25 tolerated(0.33) possibly_damaging(0.88) TCGA-CK-4947-01 20 30486295 30486295 C T TTLL9 Missense_Mutation p.R45W 0.30 deleterious(0) probably_damaging(0.996) TCGA-CK-4947-01 20 33147563 33147563 C T MAP1LC3A Missense_Mutation p.T80M 0.21 deleterious(0) possibly_damaging(0.537) TCGA-CK-4947-01 21 46888517 46888517 C T COL18A1 Silent p.P336P 0.38 TCGA-CK-4947-01 22 20230549 20230549 T A RTN4R Missense_Mutation p.E36V 0.46 tolerated(0.06) possibly_damaging(0.463) TCGA-CK-4947-01 2 164466485 164466485 C T FIGN Silent p.S619S 0.26 TCGA-CK-4947-01 2 179426058 179426058 T - TTN Frame_Shift_Del p.K28267Nfs*34 0.28 TCGA-CK-4947-01 2 17962040 17962040 T C GEN1 Missense_Mutation p.S521P 0.11 tolerated(0.07) benign(0.023) TCGA-CK-4947-01 2 197583338 197583338 G A CCDC150 Missense_Mutation p.D660N 0.29 tolerated(0.18) benign(0.318) TCGA-CK-4947-01 2 211525224 211525224 T C CPS1 Silent p.L1264L 0.07 TCGA-CK-4947-01 2 47083108 47083108 G C LINC01119 Silent p.G45G 0.22 TCGA-CK-4947-01 2 50780096 50780096 A G NRXN1 Missense_Mutation p.M503T 0.24 deleterious(0.04) probably_damaging(0.966) TCGA-CK-4947-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-CK-4947-01 3 122354901 122354901 T G PARP15 Missense_Mutation p.F664C 0.25 tolerated(0.07) possibly_damaging(0.896) TCGA-CK-4947-01 3 130613615 130613615 T C ATP2C1 Intron 0.29 TCGA-CK-4947-01 3 38889053 38889053 A G SCN11A Missense_Mutation p.L1503P 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4947-01 3 52255600 52255600 C T TLR9 Missense_Mutation p.R1065H 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4947-01 3 62467428 62467428 G A CADPS Missense_Mutation p.P1048L 0.33 deleterious(0) possibly_damaging(0.726) TCGA-CK-4947-01 3 78666908 78666908 G A ROBO1 Missense_Mutation p.R1387C 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-CK-4947-01 4 157684129 157684129 A G PDGFC 3'UTR 0.09 TCGA-CK-4947-01 4 158281187 158281187 C T GRIA2 Missense_Mutation p.T728M 0.32 deleterious(0) probably_damaging(0.994) TCGA-CK-4947-01 4 177046348 177046348 C G WDR17 Missense_Mutation p.S235C 0.23 deleterious(0) probably_damaging(0.998) TCGA-CK-4947-01 4 70802199 70802199 T C CSN1S1 Splice_Site p.X51_splice 0.29 TCGA-CK-4947-01 4 85781713 85781713 G A WDFY3 Missense_Mutation p.P11L 0.23 deleterious_low_confidence(0.02) benign(0.389) TCGA-CK-4947-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.25 TCGA-CK-4947-01 5 167913488 167913488 A G RARS 5'UTR 0.08 TCGA-CK-4947-01 5 174103 174103 G A PLEKHG4B Missense_Mutation p.R1075Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-4947-01 5 80643739 80643739 A - ACOT12 Frame_Shift_Del p.F169Lfs*59 0.24 TCGA-CK-4947-01 6 111587086 111587086 C T KIAA1919 Silent p.N107N 0.35 TCGA-CK-4947-01 6 118886779 118886779 A C CEP85L Silent p.G314G 0.29 TCGA-CK-4947-01 6 30859231 30859231 A C DDR1 Missense_Mutation p.T214P 0.29 deleterious(0) possibly_damaging(0.843) TCGA-CK-4947-01 6 43189467 43189467 T C CUL9 Missense_Mutation p.L2266P 0.09 deleterious(0) probably_damaging(0.999) TCGA-CK-4947-01 6 50811242 50811242 A T TFAP2B 3'UTR 0.35 TCGA-CK-4947-01 6 73000418 73000418 A T RIMS1 Silent p.A1197A 0.26 TCGA-CK-4947-01 7 124404242 124404242 C T GPR37 Silent p.A263A 0.07 TCGA-CK-4947-01 7 148800617 148800617 G T ZNF425 3'UTR 0.45 TCGA-CK-4947-01 7 149500867 149500867 C T SSPO RNA 0.30 TCGA-CK-4947-01 7 151163976 151163976 A T RHEB 3'UTR 0.36 TCGA-CK-4947-01 7 154684173 154684173 G A DPP6 Missense_Mutation p.D861N 0.54 deleterious(0) benign(0.011) TCGA-CK-4947-01 7 157155859 157155859 C T DNAJB6 Missense_Mutation p.R24W 0.26 deleterious(0) probably_damaging(0.985) TCGA-CK-4947-01 7 27150131 27150131 G A HOXA3 Silent p.G43G 0.21 TCGA-CK-4947-01 7 55468919 55468919 A C LANCL2 Missense_Mutation p.K244T 0.22 tolerated(0.39) probably_damaging(0.974) TCGA-CK-4947-01 7 81335698 81335698 G A HGF Silent p.H554H 0.06 TCGA-CK-4947-01 8 11683556 11683556 G A FDFT1 Silent p.L178L 0.31 TCGA-CK-4947-01 8 124358983 124358983 A G ATAD2 Silent p.S740S 0.05 TCGA-CK-4947-01 8 12886901 12886901 C T KIAA1456 3'UTR 0.32 TCGA-CK-4947-01 8 52321991 52321991 G A PXDNL Silent p.D731D 0.18 TCGA-CK-4947-01 8 76463630 76463630 A G HNF4G Silent p.Q120Q 0.09 TCGA-CK-4947-01 9 104075222 104075222 G T LPPR1 Missense_Mutation p.G260V 0.26 deleterious(0) probably_damaging(0.981) TCGA-CK-4947-01 9 18776804 18776804 C A ADAMTSL1 Missense_Mutation p.H859Q 0.25 tolerated(1) benign(0.001) TCGA-CK-4947-01 9 71628403 71628403 G C PRKACG Silent p.T202T 0.26 TCGA-CK-4947-01 9 97355958 97355958 G A FBP2 Silent p.Y17Y 0.23 TCGA-CK-4947-01 X 10104728 10104728 G A WWC3 Missense_Mutation p.R940Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-4947-01 X 114422934 114422934 C A LRCH2 Splice_Site p.X117_splice 0.29 TCGA-CK-4947-01 X 125685192 125685192 G A DCAF12L1 3'UTR 0.26 TCGA-CK-4947-01 X 134988260 134988260 G T SAGE1 Missense_Mutation p.G178C 0.25 tolerated(0.07) possibly_damaging(0.871) TCGA-CK-4947-01 X 135956677 135956677 T A RBMX Intron 0.12 TCGA-CK-4947-01 X 153281983 153281983 T A IRAK1 Missense_Mutation p.T381S 0.26 deleterious(0.01) probably_damaging(0.978) TCGA-CK-4947-01 X 153761805 153761805 C T G6PD Missense_Mutation p.V314I 0.34 tolerated(1) benign(0.247) TCGA-CK-4947-01 X 154003527 154003527 C T DKC1 Silent p.A439A 0.32 TCGA-CK-4947-01 X 3235262 3235262 G A MXRA5 Missense_Mutation p.R2154W 0.18 deleterious(0) probably_damaging(0.93) TCGA-CK-4947-01 X 83576994 83576994 A T HDX Nonsense_Mutation p.L659* 0.33 TCGA-CK-4947-01 X 99597030 99597030 T A PCDH19 Missense_Mutation p.S907C 0.23 deleterious(0) probably_damaging(0.999) TCGA-CK-4948-01 10 108380190 108380190 G A SORCS1 Missense_Mutation p.T931M 0.35 tolerated(0.08) probably_damaging(0.969) TCGA-CK-4948-01 10 121679063 121679063 A C SEC23IP Missense_Mutation p.E660D 0.28 tolerated(0.33) benign(0.075) TCGA-CK-4948-01 10 127371546 127371546 G A TEX36 Nonsense_Mutation p.R5* 0.29 TCGA-CK-4948-01 10 7618776 7618776 T C ITIH5 Missense_Mutation p.I540V 0.22 tolerated(1) benign(0.005) TCGA-CK-4948-01 10 99667809 99667809 G A CRTAC1 Missense_Mutation p.R271W 0.26 deleterious(0.02) possibly_damaging(0.72) TCGA-CK-4948-01 11 2593286 2593286 C T KCNQ1 Missense_Mutation p.R243C 0.27 deleterious(0) probably_damaging(0.997) TCGA-CK-4948-01 11 30953361 30953361 C T DCDC1 Missense_Mutation p.V952I 0.20 tolerated(0.63) benign(0) TCGA-CK-4948-01 11 36103278 36103278 G A LDLRAD3 Missense_Mutation p.R90Q 0.26 tolerated(0.2) benign(0.017) TCGA-CK-4948-01 11 49974245 49974245 T A OR4C13 Missense_Mutation p.L91I 0.06 deleterious_low_confidence(0.04) benign(0.14) TCGA-CK-4948-01 11 5536650 5536650 G A UBQLNL Missense_Mutation p.S341L 0.25 deleterious(0.01) possibly_damaging(0.573) TCGA-CK-4948-01 11 55594699 55594699 G T OR5L2 Missense_Mutation p.G2V 0.27 tolerated(0.36) benign(0.001) TCGA-CK-4948-01 11 55703506 55703506 C T OR5I1 Missense_Mutation p.R124H 0.36 deleterious(0.02) benign(0.003) TCGA-CK-4948-01 11 56085981 56085981 G A OR8K3 Missense_Mutation p.A67T 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.495) TCGA-CK-4948-01 11 61106879 61106879 G A DAK Missense_Mutation p.G153E 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4948-01 11 68157363 68157363 C A LRP5 Missense_Mutation p.T476K 0.34 deleterious(0) probably_damaging(0.958) TCGA-CK-4948-01 11 6815973 6815973 C A OR6A2 Missense_Mutation p.A323S 0.33 tolerated_low_confidence(0.47) benign(0.001) TCGA-CK-4948-01 11 9455332 9455332 G C IPO7 Missense_Mutation p.M671I 0.30 deleterious(0.01) benign(0.009) TCGA-CK-4948-01 12 110787873 110787873 G A ATP2A2 3'Flank 0.35 TCGA-CK-4948-01 12 117693826 117693826 G A NOS1 Missense_Mutation p.R850C 0.10 tolerated(0.08) benign(0.208) TCGA-CK-4948-01 12 119916995 119916995 C T CCDC60 Silent p.T146T 0.35 TCGA-CK-4948-01 12 123262023 123262023 G A CCDC62 Intron 0.10 TCGA-CK-4948-01 12 130648712 130648712 G A FZD10 Missense_Mutation p.G409S 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4948-01 12 25398214 25398214 T G KRAS Silent p.T35T 0.30 TCGA-CK-4948-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.33 deleterious(0) benign(0.361) TCGA-CK-4948-01 12 40677757 40677757 G A LRRK2 Silent p.A774A 0.09 TCGA-CK-4948-01 14 23354087 23354087 C A REM2 Nonsense_Mutation p.S103* 0.45 TCGA-CK-4948-01 14 23829243 23829243 G A EFS Silent p.Y148Y 0.29 TCGA-CK-4948-01 14 75078513 75078513 C T LTBP2 Silent p.P45P 0.50 TCGA-CK-4948-01 14 86089254 86089254 G A FLRT2 Missense_Mutation p.V466I 0.37 tolerated(1) benign(0.01) TCGA-CK-4948-01 15 67473722 67473722 C T SMAD3 Missense_Mutation p.R268C 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4948-01 15 90630482 90630482 C T IDH2 Missense_Mutation p.D277N 0.44 deleterious_low_confidence(0.04) benign(0.003) TCGA-CK-4948-01 16 11856549 11856549 T A ZC3H7A Missense_Mutation p.E686V 0.44 deleterious(0.02) benign(0.13) TCGA-CK-4948-01 16 1476347 1476347 G A C16orf91 Silent p.C92C 0.44 TCGA-CK-4948-01 16 14975455 14975455 G A NOMO1 Missense_Mutation p.M980I 0.15 deleterious(0.01) benign(0.001) TCGA-CK-4948-01 16 21063027 21063027 C T DNAH3 Missense_Mutation p.R1401Q 0.43 deleterious(0) probably_damaging(1) TCGA-CK-4948-01 16 31193862 31193862 C T FUS Nonsense_Mutation p.Q23* 0.13 TCGA-CK-4948-01 16 48167618 48167618 G A ABCC12 Missense_Mutation p.R370C 0.49 tolerated(0.18) benign(0.022) TCGA-CK-4948-01 16 49557545 49557545 G C ZNF423 Missense_Mutation p.T1272S 0.18 tolerated(0.17) possibly_damaging(0.709) TCGA-CK-4948-01 17 30362613 30362613 C A LRRC37B Missense_Mutation p.T693K 0.40 tolerated(0.06) possibly_damaging(0.788) TCGA-CK-4948-01 17 33806856 33806857 - A SLFN12L Frame_Shift_Ins p.V125Cfs*64 0.25 TCGA-CK-4948-01 17 38922717 38922718 TT - KRT26 3'UTR 0.28 TCGA-CK-4948-01 17 40091574 40091574 G A TTC25 RNA 0.39 TCGA-CK-4948-01 17 68131153 68131153 T G KCNJ16 3'UTR 0.17 TCGA-CK-4948-01 17 74387261 74387261 G T UBE2O Missense_Mutation p.D1214E 0.27 tolerated_low_confidence(0.4) possibly_damaging(0.901) TCGA-CK-4948-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.59 deleterious(0) probably_damaging(1) TCGA-CK-4948-01 19 41386475 41386475 G T CYP2A7 Silent p.T134T 0.40 TCGA-CK-4948-01 19 44130114 44130114 A G CADM4 Missense_Mutation p.V235A 0.08 tolerated(0.44) benign(0.025) TCGA-CK-4948-01 19 46289531 46289531 G A DMWD Missense_Mutation p.A408V 0.50 tolerated(0.49) benign(0.09) TCGA-CK-4948-01 19 55450929 55450929 C T NLRP7 Missense_Mutation p.A420T 0.35 deleterious(0.03) possibly_damaging(0.754) TCGA-CK-4948-01 19 9083887 9083887 A T MUC16 Nonsense_Mutation p.L2643* 0.41 TCGA-CK-4948-01 1 10364336 10364336 C G KIF1B Intron 0.34 TCGA-CK-4948-01 1 118548181 118548181 A G SPAG17 Silent p.C1544C 0.44 TCGA-CK-4948-01 1 152279925 152279925 C G FLG Missense_Mutation p.E2479D 0.06 possibly_damaging(0.84) TCGA-CK-4948-01 1 156816456 156816460 GGTGC - INSRR Frame_Shift_Del p.R554Pfs*28 0.42 TCGA-CK-4948-01 1 158615133 158615133 C T SPTA1 Missense_Mutation p.A1347T 0.19 tolerated(0.05) possibly_damaging(0.533) TCGA-CK-4948-01 1 167097884 167097884 C T DUSP27 3'UTR 0.42 TCGA-CK-4948-01 1 186276131 186276131 C A PRG4 Missense_Mutation p.S427Y 0.14 unknown(0) TCGA-CK-4948-01 1 19062356 19062356 C T PAX7 Silent p.Y462Y 0.16 TCGA-CK-4948-01 1 213170546 213170546 C T ANGEL2 Silent p.V478V 0.36 TCGA-CK-4948-01 1 228565272 228565272 C A OBSCN Missense_Mutation p.L8745M 0.16 probably_damaging(0.991) TCGA-CK-4948-01 1 27683150 27683150 G A MAP3K6 Missense_Mutation p.P1152L 0.12 tolerated(0.18) benign(0.003) TCGA-CK-4948-01 1 75112449 75112449 C A C1orf173 Nonsense_Mutation p.E49* 0.04 TCGA-CK-4948-01 20 55748352 55748352 C T BMP7 Silent p.A350A 0.24 TCGA-CK-4948-01 21 31744522 31744522 T G KRTAP13-2 Missense_Mutation p.N4H 0.32 deleterious(0.04) benign(0.164) TCGA-CK-4948-01 22 40080430 40080430 T C CACNA1I Missense_Mutation p.L1985P 0.31 tolerated(0.05) possibly_damaging(0.766) TCGA-CK-4948-01 22 50537979 50537979 C T MOV10L1 Silent p.G130G 0.36 TCGA-CK-4948-01 2 152342281 152342281 G A NEB Missense_Mutation p.A8524V 0.28 probably_damaging(0.979) TCGA-CK-4948-01 2 187487143 187487143 C G ITGAV Missense_Mutation p.Q132E 0.24 tolerated(0.29) benign(0.028) TCGA-CK-4948-01 2 187611928 187611928 G T FAM171B Missense_Mutation p.L225F 0.15 tolerated(0.09) probably_damaging(1) TCGA-CK-4948-01 2 21235489 21235489 C T APOB Silent p.T1417T 0.31 TCGA-CK-4948-01 2 225811654 225811654 C T DOCK10 Intron 0.27 TCGA-CK-4948-01 2 239040576 239040576 C G ESPNL 3'UTR 0.44 TCGA-CK-4948-01 2 26700560 26700560 G A OTOF Missense_Mutation p.R758C 0.28 deleterious(0.01) possibly_damaging(0.762) TCGA-CK-4948-01 2 39224494 39224494 A G SOS1 Missense_Mutation p.L955P 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4948-01 2 75425721 75425721 C T TACR1 Missense_Mutation p.A114T 0.36 tolerated(1) benign(0.021) TCGA-CK-4948-01 3 115560784 115560784 G A LSAMP Missense_Mutation p.T276M 0.19 tolerated(0.37) benign(0.105) TCGA-CK-4948-01 3 121138029 121138029 G C STXBP5L 3'UTR 0.40 TCGA-CK-4948-01 3 126152010 126152010 G A CCDC37 Missense_Mutation p.R462Q 0.11 tolerated(0.2) probably_damaging(0.929) TCGA-CK-4948-01 3 129127676 129127676 G A EFCAB12 Missense_Mutation p.T354M 0.18 tolerated(0.36) benign(0.051) TCGA-CK-4948-01 3 142840789 142840789 C T CHST2 Silent p.G377G 0.33 TCGA-CK-4948-01 3 14860526 14860526 C T FGD5 5'UTR 0.32 TCGA-CK-4948-01 3 153972586 153972586 G A ARHGEF26 Missense_Mutation p.V816I 0.14 deleterious(0) benign(0.243) TCGA-CK-4948-01 3 155860955 155860955 G A KCNAB1 Intron 0.35 TCGA-CK-4948-01 3 21478531 21478531 G A ZNF385D Missense_Mutation p.R202W 0.20 deleterious(0) probably_damaging(0.973) TCGA-CK-4948-01 3 44692585 44692585 T C ZNF35 Missense_Mutation p.M9T 0.38 deleterious_low_confidence(0.01) benign(0.024) TCGA-CK-4948-01 3 44701407 44701407 A C ZNF35 Missense_Mutation p.M518L 0.38 tolerated(0.55) benign(0.008) TCGA-CK-4948-01 3 49569285 49569285 C A DAG1 Silent p.R447R 0.21 TCGA-CK-4948-01 3 65341978 65341978 A G MAGI1 3'Flank 0.11 TCGA-CK-4948-01 3 81699052 81699052 G A GBE1 Silent p.S150S 0.11 TCGA-CK-4948-01 4 125593024 125593024 C T ANKRD50 Missense_Mutation p.E470K 0.33 tolerated(0.61) benign(0.021) TCGA-CK-4948-01 4 153271206 153271206 G C FBXW7 Nonsense_Mutation p.S191* 0.36 TCGA-CK-4948-01 4 156135876 156135876 G A NPY2R Missense_Mutation p.R262Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-4948-01 4 66361141 66361141 C G EPHA5 Missense_Mutation p.R344T 0.21 deleterious(0) benign(0.212) TCGA-CK-4948-01 4 95508299 95508299 C T PDLIM5 Intron 0.19 TCGA-CK-4948-01 4 96104056 96104056 C T UNC5C Missense_Mutation p.V815M 0.37 deleterious(0.01) benign(0.222) TCGA-CK-4948-01 4 99993372 99993372 G A ADH5 3'UTR 0.15 TCGA-CK-4948-01 5 112174466 112174466 G T APC Nonsense_Mutation p.E1059* 0.21 TCGA-CK-4948-01 5 112337286 112337286 C T DCP2 Nonsense_Mutation p.R241* 0.06 TCGA-CK-4948-01 5 139193082 139193082 G A PSD2 Missense_Mutation p.R187Q 0.29 tolerated(0.16) probably_damaging(0.997) TCGA-CK-4948-01 5 140792836 140792836 G A PCDHGA10 Missense_Mutation p.A32T 0.33 tolerated_low_confidence(0.11) benign(0.027) TCGA-CK-4948-01 5 147469109 147469109 C T SPINK5 Missense_Mutation p.T176I 0.26 deleterious(0) probably_damaging(0.996) TCGA-CK-4948-01 5 169533418 169533418 G A FOXI1 Missense_Mutation p.V153M 0.37 deleterious(0) probably_damaging(1) TCGA-CK-4948-01 5 169714973 169714973 C T LCP2 Splice_Site p.X63_splice 0.36 TCGA-CK-4948-01 5 177715325 177715325 C T COL23A1 Silent p.P147P 0.12 TCGA-CK-4948-01 5 178564906 178564906 G A ADAMTS2 Silent p.Y605Y 0.27 TCGA-CK-4948-01 5 52206094 52206094 G A ITGA1 Missense_Mutation p.G568R 0.38 deleterious(0) probably_damaging(0.962) TCGA-CK-4948-01 5 94749725 94749725 G A FAM81B Missense_Mutation p.R123H 0.04 tolerated(0.05) benign(0.424) TCGA-CK-4948-01 6 117715323 117715323 A G ROS1 Splice_Site p.X388_splice 0.07 TCGA-CK-4948-01 6 134492026 134492028 AGA - SGK1 In_Frame_Del p.F450del 0.18 TCGA-CK-4948-01 6 30166772 30166772 G A TRIM26 Missense_Mutation p.R37C 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-CK-4948-01 6 30303707 30303707 C T TRIM39 Silent p.A245A 0.41 TCGA-CK-4948-01 6 31541495 31541495 A C LTA 3'UTR 0.13 TCGA-CK-4948-01 6 32083495 32083495 A T ATF6B 3'UTR 0.32 TCGA-CK-4948-01 6 36285012 36285012 T C C6orf222 3'UTR 0.08 TCGA-CK-4948-01 6 99930634 99930634 A G USP45 Silent p.C280C 0.22 TCGA-CK-4948-01 7 108155903 108155903 A C PNPLA8 Missense_Mutation p.I11M 0.40 deleterious_low_confidence(0.01) benign(0.372) TCGA-CK-4948-01 7 116165007 116165007 C T CAV1 5'UTR 0.26 TCGA-CK-4948-01 7 122787282 122787282 G A SLC13A1 Missense_Mutation p.S248F 0.31 deleterious(0) probably_damaging(0.988) TCGA-CK-4948-01 7 150749758 150749758 C T ASIC3 Silent p.L545L 0.41 TCGA-CK-4948-01 7 156746974 156746974 C T NOM1 Silent p.H430H 0.06 TCGA-CK-4948-01 7 158672579 158672579 C T WDR60 Nonsense_Mutation p.R260* 0.29 TCGA-CK-4948-01 7 1886974 1886974 G A AC110781.3 Silent p.A73A 0.47 TCGA-CK-4948-01 7 75684250 75684250 G C MDH2 Missense_Mutation p.D57H 0.38 deleterious(0) probably_damaging(0.996) TCGA-CK-4948-01 7 82586152 82586152 A T PCLO Missense_Mutation p.S1373T 0.38 unknown(0) TCGA-CK-4948-01 8 120810065 120810065 G C TAF2 Missense_Mutation p.Q272E 0.45 tolerated(0.51) benign(0.173) TCGA-CK-4948-01 8 144994712 144994712 C A PLEC Nonsense_Mutation p.E3230* 0.43 TCGA-CK-4948-01 8 35544153 35544153 C T UNC5D Missense_Mutation p.P337L 0.22 deleterious(0) probably_damaging(0.992) TCGA-CK-4948-01 8 38175323 38175323 T C WHSC1L1 Intron 0.21 TCGA-CK-4948-01 8 88365913 88365913 C A CNBD1 Missense_Mutation p.S401Y 0.03 deleterious(0) probably_damaging(1) TCGA-CK-4948-01 9 113194310 113194310 G A SVEP1 Silent p.V1746V 0.40 TCGA-CK-4948-01 9 134064512 134064512 G A NUP214 Missense_Mutation p.A1190T 0.47 benign(0.031) TCGA-CK-4948-01 9 35809392 35809392 C T NPR2 Nonsense_Mutation p.R1032* 0.48 TCGA-CK-4948-01 9 97200731 97200731 G T HIATL1 Missense_Mutation p.V106L 0.17 deleterious(0.04) benign(0.02) TCGA-CK-4948-01 X 108628412 108628412 C T GUCY2F Splice_Site p.X1019_splice 0.18 TCGA-CK-4948-01 X 134986669 134986669 G T SAGE1 Missense_Mutation p.R85M 0.03 deleterious(0) possibly_damaging(0.875) TCGA-CK-4948-01 X 13774706 13774706 G C OFD1 Missense_Mutation p.E411Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-CK-4948-01 X 147024749 147024749 A G FMR1 Silent p.E458E 0.11 TCGA-CK-4948-01 X 153055738 153055738 C T IDH3G Missense_Mutation p.A49T 0.20 tolerated(0.18) benign(0.185) TCGA-CK-4948-01 X 153284453 153284453 C T IRAK1 Silent p.P171P 0.14 TCGA-CK-4948-01 X 21875210 21875210 A T YY2 Missense_Mutation p.Q203L 0.45 tolerated(0.21) benign(0) TCGA-CK-4948-01 X 2779655 2779655 G A GYG2 Silent p.P341P 0.36 TCGA-CK-4948-01 X 36103492 36103492 A T CHDC2 Missense_Mutation p.N160Y 0.06 tolerated(0.14) benign(0.043) TCGA-CK-4948-01 X 46359378 46359378 C A ZNF674 Missense_Mutation p.G549V 0.44 deleterious(0.01) probably_damaging(1) TCGA-CK-4948-01 X 5811555 5811555 G A NLGN4X Missense_Mutation p.T585M 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-CK-4948-01 X 69843815 69843815 G A TEX11 Missense_Mutation p.P594L 0.05 tolerated(0.2) benign(0.006) TCGA-CK-4948-01 X 79699780 79699780 G T FAM46D 3'UTR 0.17 TCGA-CK-4950-01 10 114920394 114920394 G A TCF7L2 Silent p.K445K 0.23 TCGA-CK-4950-01 10 11505194 11505194 C T USP6NL Missense_Mutation p.R595Q 0.18 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-CK-4950-01 10 123846283 123846283 C T TACC2 Missense_Mutation p.A1423V 0.10 benign(0.015) TCGA-CK-4950-01 10 29578114 29578114 C T LYZL1 Missense_Mutation p.T23I 0.24 tolerated_low_confidence(0.09) benign(0.013) TCGA-CK-4950-01 10 5248327 5248327 G T AKR1C4 Missense_Mutation p.K179N 0.17 deleterious(0) benign(0.372) TCGA-CK-4950-01 10 64575760 64575760 G A EGR2 Silent p.I10I 0.14 TCGA-CK-4950-01 10 98118690 98118690 C T OPALIN 5'UTR 0.22 TCGA-CK-4950-01 10 98321866 98321866 C A TM9SF3 Nonsense_Mutation p.E151* 0.16 TCGA-CK-4950-01 11 105845132 105845132 G A GRIA4 Silent p.E835E 0.16 TCGA-CK-4950-01 11 113639612 113639612 G C ZW10 Silent p.T61T 0.19 TCGA-CK-4950-01 11 121000789 121000789 G A TECTA Missense_Mutation p.R937H 0.25 deleterious(0.03) probably_damaging(0.909) TCGA-CK-4950-01 11 33604900 33604900 G A KIAA1549L Silent p.P1176P 0.26 TCGA-CK-4950-01 11 56431862 56431862 G A OR5AR1 Missense_Mutation p.R234H 0.20 deleterious(0.02) benign(0.022) TCGA-CK-4950-01 11 62996894 62996894 G T SLC22A25 Silent p.I77I 0.19 TCGA-CK-4950-01 11 70260715 70260715 G T CTTN Missense_Mutation p.G120V 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 11 78497943 78497943 C T TENM4 Missense_Mutation p.A789T 0.26 tolerated(0.07) benign(0.17) TCGA-CK-4950-01 11 94730722 94730722 C T KDM4D Silent p.T62T 0.30 TCGA-CK-4950-01 12 110295424 110295424 C A GLTP Missense_Mutation p.R68L 0.17 tolerated(0.24) benign(0.001) TCGA-CK-4950-01 12 122757380 122757380 C T CLIP1 3'Flank 0.14 TCGA-CK-4950-01 12 122977291 122977291 C G ZCCHC8 Missense_Mutation p.Q96H 0.13 deleterious(0.01) probably_damaging(0.94) TCGA-CK-4950-01 12 24736347 24736347 C T LINC00477 RNA 0.14 TCGA-CK-4950-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.35 deleterious(0) benign(0.361) TCGA-CK-4950-01 12 25671784 25671784 T C IFLTD1 Silent p.G378G 0.14 TCGA-CK-4950-01 12 3805958 3805958 T A EFCAB4B Missense_Mutation p.I70F 0.20 deleterious(0) probably_damaging(0.985) TCGA-CK-4950-01 12 48367925 48367925 G A COL2A1 Missense_Mutation p.R1422W 0.16 unknown(0) TCGA-CK-4950-01 12 49724194 49724194 C G TROAP Silent p.P522P 0.33 TCGA-CK-4950-01 12 6788171 6788171 G A ZNF384 Missense_Mutation p.A82V 0.37 tolerated(0.08) benign(0.154) TCGA-CK-4950-01 12 69080812 69080812 C T NUP107 5'UTR 0.24 TCGA-CK-4950-01 12 7080040 7080040 C A EMG1 5'UTR 0.42 TCGA-CK-4950-01 12 8800518 8800518 A C MFAP5 3'UTR 0.27 TCGA-CK-4950-01 12 97158864 97158864 G T C12orf55 Missense_Mutation p.A2717S 0.15 tolerated(0.07) benign(0.001) TCGA-CK-4950-01 13 111367955 111367955 C G ING1 Missense_Mutation p.N55K 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-CK-4950-01 13 21371134 21371134 C T XPO4 Missense_Mutation p.M795I 0.20 tolerated(0.58) benign(0) TCGA-CK-4950-01 13 23906034 23906034 G A SACS Missense_Mutation p.A3994V 0.25 probably_damaging(0.99) TCGA-CK-4950-01 13 27255255 27255255 C A WASF3 Missense_Mutation p.Q261K 0.21 tolerated(0.33) benign(0.09) TCGA-CK-4950-01 13 36049959 36049959 C T MAB21L1 Missense_Mutation p.R106H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-4950-01 13 36700129 36700129 G A DCLK1 Missense_Mutation p.T49M 0.24 deleterious(0.01) unknown(0) TCGA-CK-4950-01 13 49089740 49089740 G A RCBTB2 Silent p.Y60Y 0.20 TCGA-CK-4950-01 13 86368848 86368848 C - SLITRK6 Frame_Shift_Del p.R599Hfs*12 0.13 TCGA-CK-4950-01 14 105521854 105521854 G T GPR132 5'UTR 0.21 TCGA-CK-4950-01 14 59014534 59014534 C - KIAA0586 Frame_Shift_Del p.C1594Afs*37 0.12 TCGA-CK-4950-01 14 64632036 64632036 C A SYNE2 Silent p.R5505R 0.21 TCGA-CK-4950-01 14 74761882 74761882 G A ABCD4 Missense_Mutation p.R230W 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 14 91700848 91700848 G A GPR68 Missense_Mutation p.R183C 0.28 tolerated(0.14) probably_damaging(0.935) TCGA-CK-4950-01 14 94545483 94545483 C T DDX24 Silent p.P202P 0.16 TCGA-CK-4950-01 15 23891116 23891116 C T MAGEL2 5'UTR 0.24 TCGA-CK-4950-01 15 25924612 25924612 G A ATP10A Missense_Mutation p.T1459M 0.14 deleterious_low_confidence(0) benign(0.016) TCGA-CK-4950-01 15 74740842 74740842 C T UBL7 Missense_Mutation p.A328T 0.25 deleterious(0) benign(0.138) TCGA-CK-4950-01 15 99672863 99672863 C T SYNM Missense_Mutation p.A1432V 0.21 tolerated(0.34) benign(0.007) TCGA-CK-4950-01 16 1396312 1396312 G C BAIAP3 Missense_Mutation p.D850H 0.15 tolerated(0.1) possibly_damaging(0.648) TCGA-CK-4950-01 16 21065758 21065758 G A DNAH3 Missense_Mutation p.T1341M 0.27 deleterious(0) possibly_damaging(0.84) TCGA-CK-4950-01 16 23223468 23223468 C A SCNN1G Missense_Mutation p.N430K 0.29 deleterious(0.03) possibly_damaging(0.597) TCGA-CK-4950-01 16 2347794 2347794 G A ABCA3 Silent p.I675I 0.26 TCGA-CK-4950-01 16 57490452 57490452 G A COQ9 Missense_Mutation p.G139R 0.27 tolerated(0.52) benign(0.003) TCGA-CK-4950-01 16 71127815 71127815 G T HYDIN Silent p.R451R 0.21 TCGA-CK-4950-01 16 72057066 72057066 G A DHODH Silent p.L274L 0.27 TCGA-CK-4950-01 17 10297568 10297568 G T MYH8 Missense_Mutation p.Q1722K 0.20 deleterious(0.01) possibly_damaging(0.734) TCGA-CK-4950-01 17 18051386 18051386 C A MYO15A Missense_Mutation p.Q2185K 0.18 unknown(0) TCGA-CK-4950-01 17 27049578 27049578 G T RPL23A Intron 0.22 TCGA-CK-4950-01 17 32953277 32953277 G C TMEM132E Missense_Mutation p.A67P 0.47 tolerated(0.21) benign(0.005) TCGA-CK-4950-01 17 33504124 33504124 C G UNC45B Missense_Mutation p.P707R 0.16 deleterious(0) probably_damaging(0.978) TCGA-CK-4950-01 17 39316750 39316750 C A KRTAP4-4 Missense_Mutation p.C65F 0.21 unknown(0) TCGA-CK-4950-01 17 42744591 42744591 G A C17orf104 Missense_Mutation p.V438I 0.14 deleterious(0.04) benign(0.379) TCGA-CK-4950-01 17 48050272 48050272 C T DLX4 Intron 0.58 TCGA-CK-4950-01 17 48692772 48692772 G A CACNA1G Missense_Mutation p.V1604I 0.21 tolerated(1) benign(0.008) TCGA-CK-4950-01 17 49249006 49249006 G A NME1-NME2 3'UTR 0.15 TCGA-CK-4950-01 17 70118942 70118942 T C SOX9 Missense_Mutation p.Y172H 0.42 deleterious(0.01) benign(0.025) TCGA-CK-4950-01 18 48586237 48586237 G A SMAD4 Nonsense_Mutation p.W302* 0.17 TCGA-CK-4950-01 18 48604773 48604773 C A SMAD4 Missense_Mutation p.A532D 0.19 deleterious(0) probably_damaging(0.999) TCGA-CK-4950-01 18 58038833 58038833 C A MC4R Silent p.L250L 0.22 TCGA-CK-4950-01 18 72234622 72234622 C G CNDP1 Missense_Mutation p.P237R 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 19 13010634 13010634 G T GCDH 3'UTR 0.10 TCGA-CK-4950-01 19 14273599 14273599 G A LPHN1 Silent p.R343R 0.18 TCGA-CK-4950-01 19 3784856 3784856 C T MATK Nonsense_Mutation p.W34* 0.24 TCGA-CK-4950-01 19 39760270 39760270 G A IFNL2 Missense_Mutation p.R138Q 0.21 tolerated(1) benign(0.002) TCGA-CK-4950-01 19 40411890 40411890 G T FCGBP Silent p.A1246A 0.18 TCGA-CK-4950-01 19 46003801 46003801 G T PPM1N Missense_Mutation p.G382V 0.14 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 19 46914443 46914443 C G CCDC8 3'UTR 0.17 TCGA-CK-4950-01 19 49206883 49206883 C A FUT2 Missense_Mutation p.Q224K 0.21 tolerated(0.15) benign(0.141) TCGA-CK-4950-01 19 49254344 49254344 G A FUT1 Silent p.N65N 0.13 TCGA-CK-4950-01 19 51918487 51918487 G A SIGLEC10 Silent p.H426H 0.20 TCGA-CK-4950-01 19 53459301 53459301 C T ZNF816 Silent p.E14E 0.19 TCGA-CK-4950-01 19 55341771 55341771 A G KIR3DL1 3'UTR 0.22 TCGA-CK-4950-01 19 56369277 56369277 C T NLRP4 Missense_Mutation p.S173L 0.05 tolerated(0.14) benign(0.09) TCGA-CK-4950-01 19 57336093 57336093 C T PEG3 5'UTR 0.14 TCGA-CK-4950-01 19 57640930 57640930 T G USP29 Missense_Mutation p.M296R 0.16 deleterious(0) probably_damaging(0.959) TCGA-CK-4950-01 19 617460 617460 G A POLRMT Missense_Mutation p.A1201V 0.18 tolerated(0.51) benign(0.004) TCGA-CK-4950-01 19 7975932 7975932 A G MAP2K7 Missense_Mutation p.N248S 0.50 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 19 9324797 9324797 G T OR7D4 Silent p.S239S 0.14 TCGA-CK-4950-01 1 117156445 117156445 C T IGSF3 Silent p.S258S 0.19 TCGA-CK-4950-01 1 11848655 11848655 G T MTHFR 3'UTR 0.21 TCGA-CK-4950-01 1 149872005 149872005 G A BOLA1 Silent p.K131K 0.22 TCGA-CK-4950-01 1 151206692 151206692 G C PIP5K1A Missense_Mutation p.R220P 0.22 deleterious(0.01) possibly_damaging(0.841) TCGA-CK-4950-01 1 196621267 196621267 T C CFH Missense_Mutation p.I7T 0.21 deleterious(0.02) benign(0.018) TCGA-CK-4950-01 1 210334243 210334243 A G SYT14 Silent p.K572K 0.19 TCGA-CK-4950-01 1 210414915 210414915 T G SERTAD4 Missense_Mutation p.F102V 0.19 tolerated(0.11) probably_damaging(0.994) TCGA-CK-4950-01 1 221913054 221913054 T C DUSP10 Silent p.V11V 0.13 TCGA-CK-4950-01 1 23720431 23720431 G A TCEA3 Missense_Mutation p.R254W 0.27 deleterious(0) possibly_damaging(0.8) TCGA-CK-4950-01 1 237824219 237824219 G A RYR2 Missense_Mutation p.R2803Q 0.22 benign(0.007) TCGA-CK-4950-01 1 242383368 242383368 C A PLD5 Silent p.L219L 0.16 TCGA-CK-4950-01 1 4772689 4772689 G A AJAP1 Silent p.T253T 0.33 TCGA-CK-4950-01 1 75038368 75038368 G A C1orf173 Missense_Mutation p.S1009L 0.26 tolerated(0.86) benign(0.007) TCGA-CK-4950-01 1 76877881 76877881 T C ST6GALNAC3 Silent p.P134P 0.21 TCGA-CK-4950-01 1 77748003 77748003 A T AK5 Missense_Mutation p.N2I 0.21 deleterious(0) benign(0.325) TCGA-CK-4950-01 1 97236306 97236306 G T PTBP2 Missense_Mutation p.V111F 0.19 deleterious(0) possibly_damaging(0.875) TCGA-CK-4950-01 20 17602110 17602110 G A RRBP1 Missense_Mutation p.A703V 0.23 deleterious(0) possibly_damaging(0.695) TCGA-CK-4950-01 20 8639248 8639248 G A PLCB1 Silent p.Q253Q 0.29 TCGA-CK-4950-01 21 31797817 31797817 A G KRTAP13-3 Silent p.P138P 0.23 TCGA-CK-4950-01 21 32492957 32492957 G T TIAM1 Missense_Mutation p.T1502K 0.16 deleterious(0) probably_damaging(0.971) TCGA-CK-4950-01 21 42780232 42780232 G C MX2 3'UTR 0.26 TCGA-CK-4950-01 21 47549156 47549156 G A COL6A2 Intron 0.15 TCGA-CK-4950-01 21 47831133 47831133 G T PCNT Nonsense_Mutation p.E1716* 0.26 TCGA-CK-4950-01 22 28394971 28394971 G A TTC28 Missense_Mutation p.T1559M 0.19 deleterious(0) probably_damaging(0.938) TCGA-CK-4950-01 22 43821203 43821203 C T MPPED1 Missense_Mutation p.P71L 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-CK-4950-01 22 50530475 50530475 G A MOV10L1 Missense_Mutation p.C48Y 0.21 tolerated(0.06) possibly_damaging(0.834) TCGA-CK-4950-01 22 50719207 50719207 G A PLXNB2 Missense_Mutation p.S1320F 0.27 deleterious(0) probably_damaging(0.998) TCGA-CK-4950-01 2 103281587 103281587 G T SLC9A2 Missense_Mutation p.C261F 0.34 tolerated(0.6) probably_damaging(0.996) TCGA-CK-4950-01 2 113940506 113940506 C A PSD4 Missense_Mutation p.A158E 0.40 deleterious_low_confidence(0.02) benign(0.263) TCGA-CK-4950-01 2 114195483 114195483 A G CBWD2 Missense_Mutation p.D13G 0.40 deleterious(0.02) benign(0.044) TCGA-CK-4950-01 2 121746766 121746766 C A GLI2 Silent p.G1092G 0.17 TCGA-CK-4950-01 2 153417524 153417524 C T FMNL2 Missense_Mutation p.R191C 0.32 probably_damaging(0.975) TCGA-CK-4950-01 2 163302619 163302619 A G KCNH7 Missense_Mutation p.I488T 0.14 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 2 179474488 179474488 C T TTN Missense_Mutation p.R17221H 0.17 TCGA-CK-4950-01 2 179476821 179476821 C - TTN Frame_Shift_Del p.E16773Sfs*22 0.23 TCGA-CK-4950-01 2 179485127 179485127 G A TTN Missense_Mutation p.T15374I 0.34 TCGA-CK-4950-01 2 179664232 179664232 G A TTN Missense_Mutation p.P299L 0.35 TCGA-CK-4950-01 2 211069375 211069375 C T ACADL Missense_Mutation p.R267Q 0.37 deleterious(0.03) probably_damaging(0.917) TCGA-CK-4950-01 2 228884800 228884800 C A SPHKAP Missense_Mutation p.W257L 0.39 tolerated(0.68) benign(0.002) TCGA-CK-4950-01 2 234106902 234106902 C T INPP5D Missense_Mutation p.P940L 0.20 tolerated(0.31) benign(0.041) TCGA-CK-4950-01 2 234237161 234237161 G T SAG Missense_Mutation p.A184S 0.41 deleterious(0.04) possibly_damaging(0.693) TCGA-CK-4950-01 2 234863887 234863887 G A TRPM8 Missense_Mutation p.R452Q 0.35 tolerated(1) benign(0.075) TCGA-CK-4950-01 2 238287772 238287772 G A COL6A3 Silent p.S668S 0.28 TCGA-CK-4950-01 2 70315180 70315180 T G PCBP1 Missense_Mutation p.L102R 0.16 deleterious(0) probably_damaging(0.992) TCGA-CK-4950-01 3 122808109 122808109 G A PDIA5 Missense_Mutation p.R46Q 0.21 deleterious(0.04) benign(0.135) TCGA-CK-4950-01 3 133362095 133362095 G C TOPBP1 Missense_Mutation p.A657G 0.19 deleterious(0) benign(0.027) TCGA-CK-4950-01 3 137484316 137484316 C T SOX14 Silent p.D230D 0.17 TCGA-CK-4950-01 3 178525211 178525211 C A KCNMB2 Missense_Mutation p.T5N 0.24 tolerated(0.5) possibly_damaging(0.655) TCGA-CK-4950-01 3 179418812 179418812 C T USP13 Silent p.D124D 0.19 TCGA-CK-4950-01 3 181431122 181431122 A G SOX2 3'UTR 0.16 TCGA-CK-4950-01 3 197616515 197616515 A G IQCG Missense_Mutation p.V423A 0.21 tolerated(0.83) unknown(0) TCGA-CK-4950-01 3 42727161 42727161 G A KLHL40 Silent p.T17T 0.24 TCGA-CK-4950-01 3 49688431 49688432 AA - BSN Frame_Shift_Del p.K636Efs*7 0.15 TCGA-CK-4950-01 3 51315167 51315167 G A DOCK3 Silent p.Q935Q 0.21 TCGA-CK-4950-01 3 78666966 78666966 C T ROBO1 Silent p.T1367T 0.19 TCGA-CK-4950-01 4 106193890 106193890 G A TET2 Missense_Mutation p.R1451Q 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-CK-4950-01 4 114254294 114254294 C A ANK2 Missense_Mutation p.D1103E 0.26 possibly_damaging(0.54) TCGA-CK-4950-01 4 114277961 114277961 G T ANK2 Missense_Mutation p.E2729D 0.17 benign(0.011) TCGA-CK-4950-01 4 154216477 154216477 C T TRIM2 Nonsense_Mutation p.Q267* 0.25 TCGA-CK-4950-01 4 155505898 155505899 - A FGA Frame_Shift_Ins p.S660Ffs*27 0.17 TCGA-CK-4950-01 4 156831245 156831245 T C TDO2 Missense_Mutation p.V167A 0.22 deleterious(0) possibly_damaging(0.73) TCGA-CK-4950-01 4 165878321 165878321 G A FAM218A Silent p.L49L 0.18 TCGA-CK-4950-01 4 169433390 169433390 C T PALLD Silent p.D245D 0.20 TCGA-CK-4950-01 4 183064184 183064184 G T AC108142.1 RNA 0.16 TCGA-CK-4950-01 4 3319200 3319200 A G RGS12 Missense_Mutation p.S435G 0.09 tolerated(0.17) benign(0.08) TCGA-CK-4950-01 4 55154983 55154983 G A PDGFRA Missense_Mutation p.G898S 0.25 tolerated(0.13) probably_damaging(1) TCGA-CK-4950-01 4 7435132 7435132 C A PSAPL1 Missense_Mutation p.S492I 0.18 deleterious(0) probably_damaging(0.999) TCGA-CK-4950-01 4 77036504 77036504 C T NUP54 3'UTR 0.18 TCGA-CK-4950-01 4 8609143 8609143 C T CPZ Silent p.P406P 0.28 TCGA-CK-4950-01 5 112173560 112173561 - A APC Frame_Shift_Ins p.A759Sfs*16 0.18 TCGA-CK-4950-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.26 TCGA-CK-4950-01 5 112257002 112257002 A G REEP5 Intron 0.35 TCGA-CK-4950-01 5 140215912 140215912 G T PCDHA7 Silent p.L648L 0.22 TCGA-CK-4950-01 5 43527537 43527537 C G PAIP1 Missense_Mutation p.E461Q 0.22 deleterious(0) probably_damaging(0.983) TCGA-CK-4950-01 5 77714636 77714636 T G SCAMP1 Missense_Mutation p.F127L 0.20 tolerated(0.13) benign(0.17) TCGA-CK-4950-01 5 79284297 79284297 T A MTX3 Missense_Mutation p.E103D 0.24 tolerated(0.06) benign(0.057) TCGA-CK-4950-01 5 95759067 95759067 C T PCSK1 Missense_Mutation p.V165I 0.19 tolerated(1) possibly_damaging(0.691) TCGA-CK-4950-01 6 110064910 110064910 G T FIG4 Missense_Mutation p.A358S 0.27 tolerated(0.05) benign(0.122) TCGA-CK-4950-01 6 119509619 119509619 C T MAN1A1 Missense_Mutation p.R557K 0.19 deleterious(0) probably_damaging(0.978) TCGA-CK-4950-01 6 12121659 12121659 A C HIVEP1 Missense_Mutation p.D544A 0.26 deleterious(0.05) benign(0.407) TCGA-CK-4950-01 6 161155095 161155095 C T PLG Silent p.Y552Y 0.22 TCGA-CK-4950-01 6 24472839 24472839 T C GPLD1 Silent p.E172E 0.21 TCGA-CK-4950-01 6 24873146 24873146 G T FAM65B Missense_Mutation p.T100K 0.28 deleterious(0) probably_damaging(0.948) TCGA-CK-4950-01 6 32118649 32118649 C T PRRT1 Silent p.P18P 0.18 TCGA-CK-4950-01 6 35088079 35088079 C A TCP11 Missense_Mutation p.K337N 0.21 deleterious(0.04) benign(0.139) TCGA-CK-4950-01 6 36483222 36483222 C T STK38 Missense_Mutation p.E188K 0.20 tolerated(0.86) benign(0.063) TCGA-CK-4950-01 6 45390282 45390282 C A RUNX2 Intron 0.21 TCGA-CK-4950-01 6 57012978 57012978 G T ZNF451 Nonsense_Mutation p.E699* 0.23 TCGA-CK-4950-01 6 73043344 73043344 C A RIMS1 Nonsense_Mutation p.S1391* 0.20 TCGA-CK-4950-01 6 73043379 73043379 G T RIMS1 Nonsense_Mutation p.G1403* 0.25 TCGA-CK-4950-01 7 108119693 108119693 G A PNPLA8 Missense_Mutation p.T670M 0.28 tolerated(0.06) benign(0.042) TCGA-CK-4950-01 7 121650934 121650934 G A PTPRZ1 Missense_Mutation p.E612K 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.562) TCGA-CK-4950-01 7 128480725 128480725 G A FLNC Missense_Mutation p.R558H 0.32 deleterious(0.03) probably_damaging(0.987) TCGA-CK-4950-01 7 138417798 138417798 G T ATP6V0A4 Missense_Mutation p.P578T 0.18 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 7 142572886 142572886 C T TRPV6 Missense_Mutation p.R385Q 0.12 deleterious(0.04) probably_damaging(0.991) TCGA-CK-4950-01 7 150768198 150768198 G C SLC4A2 Missense_Mutation p.D597H 0.15 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 7 37283995 37283995 G A ELMO1 Nonsense_Mutation p.R139* 0.33 TCGA-CK-4950-01 7 48313550 48313550 C A ABCA13 Missense_Mutation p.N1429K 0.27 benign(0.002) TCGA-CK-4950-01 7 48314636 48314636 C T ABCA13 Silent p.F1791F 0.19 TCGA-CK-4950-01 7 50742355 50742355 T C GRB10 Missense_Mutation p.E47G 0.17 deleterious_low_confidence(0) benign(0.097) TCGA-CK-4950-01 7 550537 550537 G A PDGFA Missense_Mutation p.P121L 0.17 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 7 82475904 82475904 G T PCLO Missense_Mutation p.L4604I 0.12 unknown(0) TCGA-CK-4950-01 7 86493775 86493775 T G GRM3 3'UTR 0.11 TCGA-CK-4950-01 7 92158144 92158144 G C RBM48 Missense_Mutation p.G6A 0.16 tolerated(0.26) benign(0.079) TCGA-CK-4950-01 8 10464588 10464588 G A RP1L1 Silent p.A2340A 0.21 TCGA-CK-4950-01 8 10469907 10469907 C T RP1L1 Silent p.E567E 0.20 TCGA-CK-4950-01 8 11614543 11614543 C T GATA4 Missense_Mutation p.T366M 0.23 deleterious(0) possibly_damaging(0.517) TCGA-CK-4950-01 8 125499283 125499283 C T RNF139 Missense_Mutation p.R465C 0.27 deleterious(0) probably_damaging(0.997) TCGA-CK-4950-01 8 17611817 17611817 T C MTUS1 Missense_Mutation p.I500M 0.17 deleterious(0) probably_damaging(0.996) TCGA-CK-4950-01 8 39679164 39679164 T C ADAM2 Silent p.Q95Q 0.18 TCGA-CK-4950-01 8 49642307 49642307 T A EFCAB1 Missense_Mutation p.D148V 0.23 deleterious(0) probably_damaging(0.997) TCGA-CK-4950-01 8 69031690 69031690 C T PREX2 Missense_Mutation p.R1149C 0.18 deleterious_low_confidence(0.03) benign(0.001) TCGA-CK-4950-01 8 92033628 92033628 C - TMEM55A Frame_Shift_Del p.E37Dfs*19 0.22 TCGA-CK-4950-01 8 92307793 92307793 C T SLC26A7 Silent p.N113N 0.13 TCGA-CK-4950-01 8 92352692 92352692 C T SLC26A7 Silent p.F313F 0.25 TCGA-CK-4950-01 9 107379588 107379588 T G OR13C9 Missense_Mutation p.N300H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CK-4950-01 9 127083821 127083821 C T NEK6 Silent p.D160D 0.21 TCGA-CK-4950-01 9 133306837 133306837 G A HMCN2 Missense_Mutation p.G621S 0.24 deleterious(0) probably_damaging(1) TCGA-CK-4950-01 9 137710885 137710885 C T COL5A1 Missense_Mutation p.P1478S 0.12 unknown(0) TCGA-CK-4950-01 9 73151018 73151018 T G TRPM3 Missense_Mutation p.K1659Q 0.20 deleterious_low_confidence(0.01) benign(0.392) TCGA-CK-4950-01 9 82267606 82267606 C T TLE4 Silent p.I163I 0.19 TCGA-CK-4950-01 X 103359873 103359873 C G ZCCHC18 Missense_Mutation p.H357Q 0.21 deleterious(0) probably_damaging(0.964) TCGA-CK-4950-01 X 105970197 105970197 C A RNF128 Silent p.S18S 0.16 TCGA-CK-4950-01 X 117053529 117053529 C A KLHL13 Missense_Mutation p.Q178H 0.14 deleterious(0) probably_damaging(0.943) TCGA-CK-4950-01 X 117960307 117960307 C G ZCCHC12 Missense_Mutation p.A367G 0.21 tolerated_low_confidence(0.15) benign(0.034) TCGA-CK-4950-01 X 117960368 117960368 G A ZCCHC12 Silent p.R387R 0.19 TCGA-CK-4950-01 X 120181725 120181725 G A GLUD2 Missense_Mutation p.D63N 0.18 tolerated(0.36) benign(0.004) TCGA-CK-4950-01 X 123785954 123785954 C A TENM1 Missense_Mutation p.M463I 0.16 tolerated(0.07) benign(0.005) TCGA-CK-4950-01 X 130215642 130215642 G T ARHGAP36 Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-CK-4950-01 X 139586650 139586650 G T SOX3 Silent p.A192A 0.18 TCGA-CK-4950-01 X 14038485 14038485 G C GEMIN8 Missense_Mutation p.P62A 0.19 tolerated(0.13) benign(0.013) TCGA-CK-4950-01 X 152988991 152988991 G A BCAP31 Silent p.D43D 0.18 TCGA-CK-4950-01 X 153051325 153051325 G A IDH3G 3'UTR 0.18 TCGA-CK-4950-01 X 155255174 155255174 C A WASH6P RNA 0.11 TCGA-CK-4950-01 X 18924865 18924865 C T PHKA2 Missense_Mutation p.V889I 0.18 tolerated(0.69) benign(0.106) TCGA-CK-4950-01 X 3241597 3241597 G T MXRA5 Missense_Mutation p.T710N 0.20 tolerated(0.21) benign(0.153) TCGA-CK-4950-01 X 34148897 34148897 C T FAM47A Missense_Mutation p.R500Q 0.14 tolerated(0.16) possibly_damaging(0.572) TCGA-CK-4950-01 X 41000437 41000437 A C USP9X Missense_Mutation p.N330T 0.14 tolerated(0.31) possibly_damaging(0.696) TCGA-CK-4950-01 X 48340994 48340994 G A FTSJ1 Missense_Mutation p.G257S 0.17 tolerated(0.4) benign(0.014) TCGA-CK-4950-01 X 54971931 54971931 G A PFKFB1 Missense_Mutation p.P347S 0.18 possibly_damaging(0.882) TCGA-CK-4950-01 X 63411291 63411291 G A AMER1 Nonsense_Mutation p.R626* 0.30 TCGA-CK-4950-01 X 67938428 67938428 C T STARD8 Missense_Mutation p.R558W 0.38 deleterious(0.01) possibly_damaging(0.843) TCGA-CK-4950-01 X 70443886 70443886 G C GJB1 Missense_Mutation p.G110A 0.18 tolerated(0.06) benign(0.412) TCGA-CK-4950-01 X 76813058 76813058 C G ATRX Missense_Mutation p.R2188P 0.18 probably_damaging(0.956) TCGA-CK-4950-01 X 84362345 84362345 G A SATL1 Nonsense_Mutation p.R544* 0.17 TCGA-CK-4950-01 X 92966182 92966182 G C FAM133A 3'UTR 0.18 TCGA-CK-4951-01 10 100152233 100152233 A T PYROXD2 Missense_Mutation p.S340T 0.42 deleterious(0) possibly_damaging(0.608) TCGA-CK-4951-01 10 101163587 101163587 G T GOT1 Missense_Mutation p.F229L 0.45 deleterious(0.03) benign(0.423) TCGA-CK-4951-01 10 101293057 101293057 G A NKX2-3 Missense_Mutation p.D57N 0.26 deleterious(0.02) probably_damaging(0.971) TCGA-CK-4951-01 10 101293066 101293066 G A NKX2-3 Missense_Mutation p.E60K 0.28 tolerated(0.11) benign(0.021) TCGA-CK-4951-01 10 101646152 101646152 C T DNMBP Missense_Mutation p.A1175T 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-CK-4951-01 10 101808630 101808630 T A CPN1 Missense_Mutation p.D372V 0.31 tolerated(0.3) benign(0.002) TCGA-CK-4951-01 10 102257821 102257821 G A SEC31B Missense_Mutation p.R610C 0.34 tolerated(0.17) benign(0.002) TCGA-CK-4951-01 10 102587324 102587324 C - PAX2 Frame_Shift_Del p.R403Gfs*37 0.32 TCGA-CK-4951-01 10 102738570 102738570 C G MRPL43 3'Flank 0.23 TCGA-CK-4951-01 10 102740341 102740341 G A SEMA4G Missense_Mutation p.G453D 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 102753273 102753273 G A C10orf2 3'UTR 0.35 TCGA-CK-4951-01 10 102762527 102762527 C - LZTS2 Frame_Shift_Del p.P79Lfs*64 0.26 TCGA-CK-4951-01 10 102827714 102827714 G A KAZALD1 3'Flank 0.36 TCGA-CK-4951-01 10 102891380 102891380 C T TLX1 Missense_Mutation p.P28S 0.29 tolerated(0.41) benign(0.003) TCGA-CK-4951-01 10 102896654 102896654 C T TLX1 Missense_Mutation p.A326V 0.38 tolerated(0.53) benign(0.106) TCGA-CK-4951-01 10 103296361 103296361 C T BTRC Missense_Mutation p.R510C 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 10 103354447 103354447 G A DPCD Missense_Mutation p.G33S 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-CK-4951-01 10 103870378 103870378 G A LDB1 Missense_Mutation p.H145Y 0.41 tolerated(0.29) possibly_damaging(0.568) TCGA-CK-4951-01 10 103920342 103920342 C T NOLC1 Silent p.G411G 0.33 TCGA-CK-4951-01 10 103990263 103990263 G A PITX3 3'UTR 0.23 TCGA-CK-4951-01 10 103990265 103990265 G A PITX3 3'UTR 0.23 TCGA-CK-4951-01 10 103990611 103990611 G T PITX3 Missense_Mutation p.P190Q 0.26 deleterious(0.01) probably_damaging(0.937) TCGA-CK-4951-01 10 104129689 104129689 G A GBF1 Missense_Mutation p.G1095D 0.38 tolerated(0.21) possibly_damaging(0.627) TCGA-CK-4951-01 10 104155702 104155702 G C NFKB2 5'UTR 0.29 TCGA-CK-4951-01 10 104157804 104157804 G A NFKB2 Missense_Mutation p.G243E 0.37 deleterious(0) possibly_damaging(0.81) TCGA-CK-4951-01 10 104160553 104160553 T C NFKB2 Missense_Mutation p.L647P 0.17 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 10 104164370 104164370 G A PSD Silent p.L890L 0.26 TCGA-CK-4951-01 10 104183229 104183229 G C CUEDC2 Missense_Mutation p.A273G 0.39 deleterious(0.03) benign(0.083) TCGA-CK-4951-01 10 104233383 104233383 C T TMEM180 Missense_Mutation p.R328C 0.29 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 10 104378946 104378946 G A SUFU Intron 0.48 TCGA-CK-4951-01 10 104416612 104416612 C T TRIM8 Missense_Mutation p.A386V 0.30 deleterious_low_confidence(0.03) benign(0.329) TCGA-CK-4951-01 10 105006330 105006330 A T RPEL1 Missense_Mutation p.M193L 0.26 tolerated(0.05) benign(0.339) TCGA-CK-4951-01 10 105145110 105145110 C T TAF5 Silent p.D564D 0.43 TCGA-CK-4951-01 10 105154102 105154102 G A USMG5 5'UTR 0.41 TCGA-CK-4951-01 10 105233321 105233321 G T CALHM3 Missense_Mutation p.D228E 0.36 tolerated(0.2) benign(0.062) TCGA-CK-4951-01 10 105233324 105233324 G A CALHM3 Silent p.F227F 0.36 TCGA-CK-4951-01 10 105331473 105331473 C T NEURL1 Silent p.R181R 0.24 TCGA-CK-4951-01 10 105350047 105350047 G A NEURL1 Missense_Mutation p.R548H 0.13 deleterious(0) probably_damaging(0.977) TCGA-CK-4951-01 10 105799368 105799368 G A COL17A1 Missense_Mutation p.S940L 0.31 possibly_damaging(0.549) TCGA-CK-4951-01 10 105893385 105893385 C T WDR96 Missense_Mutation p.R1530H 0.28 tolerated(0.27) benign(0.15) TCGA-CK-4951-01 10 105926324 105926324 C T WDR96 Silent p.G987G 0.26 TCGA-CK-4951-01 10 106014716 106014716 G T GSTO1 Silent p.G10G 0.44 TCGA-CK-4951-01 10 106075704 106075704 C T ITPRIP Missense_Mutation p.E36K 0.28 deleterious(0.02) benign(0.367) TCGA-CK-4951-01 10 106075734 106075734 C T ITPRIP Missense_Mutation p.E26K 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-CK-4951-01 10 106976850 106976850 G A SORCS3 Missense_Mutation p.D902N 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-CK-4951-01 10 111640682 111640682 C T XPNPEP1 Missense_Mutation p.R350H 0.44 tolerated(0.05) possibly_damaging(0.817) TCGA-CK-4951-01 10 111878989 111878989 G A ADD3 Silent p.G246G 0.37 TCGA-CK-4951-01 10 111987964 111987964 G A MXI1 Missense_Mutation p.A98T 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-CK-4951-01 10 112581061 112581061 C T RBM20 Missense_Mutation p.A895V 0.36 tolerated(0.26) benign(0.242) TCGA-CK-4951-01 10 112581686 112581686 G A RBM20 Silent p.L1103L 0.25 TCGA-CK-4951-01 10 112837961 112837961 C T ADRA2A Silent p.V69V 0.39 TCGA-CK-4951-01 10 112838327 112838327 C T ADRA2A Silent p.G191G 0.33 TCGA-CK-4951-01 10 114185147 114185147 C T ACSL5 Nonsense_Mutation p.Q605* 0.33 TCGA-CK-4951-01 10 114925669 114925669 C T TCF7L2 Missense_Mutation p.H583Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.478) TCGA-CK-4951-01 10 115806043 115806043 G A ADRB1 3'UTR 0.26 TCGA-CK-4951-01 10 115947610 115947610 T G TDRD1 Missense_Mutation p.F7C 0.08 tolerated_low_confidence(0.14) benign(0.146) TCGA-CK-4951-01 10 116037787 116037787 C T VWA2 Silent p.I227I 0.29 TCGA-CK-4951-01 10 116073770 116073770 C T AFAP1L2 Missense_Mutation p.V218M 0.35 deleterious(0) possibly_damaging(0.658) TCGA-CK-4951-01 10 116889173 116889173 T C ATRNL1 Silent p.C235C 0.31 TCGA-CK-4951-01 10 117228763 117228763 A C ATRNL1 Missense_Mutation p.K1193T 0.09 deleterious(0.05) benign(0.043) TCGA-CK-4951-01 10 118434498 118434498 C T HSPA12A Missense_Mutation p.D608N 0.27 deleterious(0.05) possibly_damaging(0.46) TCGA-CK-4951-01 10 118641045 118641045 T - ENO4 Frame_Shift_Del p.Y267Tfs*31 0.27 TCGA-CK-4951-01 10 118893653 118893653 C T VAX1 Missense_Mutation p.A291T 0.31 tolerated(0.24) benign(0.012) TCGA-CK-4951-01 10 119302950 119302950 G A EMX2 Missense_Mutation p.A58T 0.36 tolerated(0.42) possibly_damaging(0.499) TCGA-CK-4951-01 10 119302958 119302958 T C EMX2 Silent p.G60G 0.35 TCGA-CK-4951-01 10 119302963 119302963 G A EMX2 Missense_Mutation p.G62D 0.35 tolerated(0.06) benign(0.092) TCGA-CK-4951-01 10 12071156 12071156 T C UPF2 Missense_Mutation p.K245E 0.35 tolerated(0.05) benign(0.407) TCGA-CK-4951-01 10 12077450 12077450 G T UPF2 5'UTR 0.33 TCGA-CK-4951-01 10 120840286 120840286 C T EIF3A 5'UTR 0.22 TCGA-CK-4951-01 10 120933973 120933973 G A PRDX3 Missense_Mutation p.P101S 0.25 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 10 121295976 121295976 G A RGS10 Intron 0.36 TCGA-CK-4951-01 10 121586986 121586986 G A INPP5F Silent p.A1031A 0.36 TCGA-CK-4951-01 10 121596430 121596430 G A MCMBP Missense_Mutation p.S509L 0.44 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 122624670 122624670 G A WDR11 Silent p.V275V 0.34 TCGA-CK-4951-01 10 122648589 122648589 G A WDR11 Splice_Site p.X708_splice 0.40 TCGA-CK-4951-01 10 12292385 12292385 G A CDC123 3'UTR 0.32 TCGA-CK-4951-01 10 123842843 123842843 G A TACC2 Silent p.P276P 0.24 TCGA-CK-4951-01 10 123843036 123843036 C A TACC2 Missense_Mutation p.L341M 0.32 probably_damaging(0.935) TCGA-CK-4951-01 10 123846858 123846858 C T TACC2 Missense_Mutation p.P1615S 0.19 benign(0.012) TCGA-CK-4951-01 10 124097643 124097643 G A BTBD16 3'UTR 0.31 TCGA-CK-4951-01 10 124457281 124457281 G A C10orf120 Missense_Mutation p.R326C 0.35 tolerated(0.18) benign(0) TCGA-CK-4951-01 10 124895626 124895627 - C HMX3 Frame_Shift_Ins p.P24Tfs*24 0.14 TCGA-CK-4951-01 10 125426587 125426587 C T GPR26 Missense_Mutation p.P222S 0.30 deleterious(0.01) probably_damaging(0.978) TCGA-CK-4951-01 10 125521473 125521473 G A CPXM2 Silent p.D564D 0.47 TCGA-CK-4951-01 10 126136434 126136434 G A NKX1-2 Missense_Mutation p.A166V 0.24 deleterious(0) benign(0.177) TCGA-CK-4951-01 10 126311604 126311604 G A FAM53B 3'UTR 0.33 TCGA-CK-4951-01 10 127477367 127477367 C T UROS 3'UTR 0.39 TCGA-CK-4951-01 10 129846057 129846057 G A PTPRE Missense_Mutation p.S80N 0.26 tolerated(0.54) benign(0.006) TCGA-CK-4951-01 10 129903379 129903379 C T MKI67 Missense_Mutation p.S2242N 0.32 tolerated(0.51) probably_damaging(0.998) TCGA-CK-4951-01 10 13152393 13152393 C T OPTN Missense_Mutation p.R96C 0.36 tolerated(0.34) probably_damaging(0.912) TCGA-CK-4951-01 10 131666142 131666142 T C EBF3 Silent p.E263E 0.15 TCGA-CK-4951-01 10 131666171 131666171 G A EBF3 Missense_Mutation p.P254S 0.20 deleterious(0) possibly_damaging(0.869) TCGA-CK-4951-01 10 132902586 132902586 A T TCERG1L Nonsense_Mutation p.L476* 0.43 TCGA-CK-4951-01 10 134145137 134145137 C T LRRC27 5'Flank 0.30 TCGA-CK-4951-01 10 134598926 134598926 C T NKX6-2 Missense_Mutation p.G146E 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-CK-4951-01 10 134598936 134598936 C G NKX6-2 Missense_Mutation p.D143H 0.35 deleterious(0.03) possibly_damaging(0.465) TCGA-CK-4951-01 10 134628109 134628109 C T TTC40 Silent p.V2419V 0.27 TCGA-CK-4951-01 10 13481204 13481204 G A BEND7 Missense_Mutation p.L459F 0.29 unknown(0) TCGA-CK-4951-01 10 134940752 134940752 C T GPR123 Silent p.S139S 0.35 TCGA-CK-4951-01 10 134942673 134942673 C G GPR123 Missense_Mutation p.S447R 0.24 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 10 135038479 135038479 G A KNDC1 3'UTR 0.28 TCGA-CK-4951-01 10 135125456 135125456 G A ZNF511 Intron 0.24 TCGA-CK-4951-01 10 135165818 135165818 C T PRAP1 Silent p.D110D 0.37 TCGA-CK-4951-01 10 135176297 135176297 A T ECHS1 3'UTR 0.21 TCGA-CK-4951-01 10 135197636 135197636 G A PAOX Silent p.S347S 0.33 TCGA-CK-4951-01 10 13698751 13698751 C T FRMD4A Silent p.S946S 0.32 TCGA-CK-4951-01 10 16562710 16562710 C T C1QL3 Missense_Mutation p.A119T 0.29 tolerated(0.15) benign(0.126) TCGA-CK-4951-01 10 17363321 17363321 T - ST8SIA6 Frame_Shift_Del p.A252Pfs*53 0.31 TCGA-CK-4951-01 10 17641386 17641386 G A PTPLA Missense_Mutation p.L170F 0.24 deleterious(0) possibly_damaging(0.832) TCGA-CK-4951-01 10 22019952 22019953 - T MLLT10 Frame_Shift_Ins p.L731Ffs*8 0.17 TCGA-CK-4951-01 10 22209761 22209761 G A DNAJC1 Missense_Mutation p.A168V 0.34 tolerated(0.51) probably_damaging(0.999) TCGA-CK-4951-01 10 22607037 22607037 T C COMMD3 Silent p.T85T 0.24 TCGA-CK-4951-01 10 22700009 22700009 G A SPAG6 Missense_Mutation p.G455D 0.28 deleterious(0.03) probably_damaging(0.957) TCGA-CK-4951-01 10 24886483 24886483 C T ARHGAP21 Missense_Mutation p.R1076H 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 25887186 25887186 C A GPR158 Nonsense_Mutation p.C877* 0.31 TCGA-CK-4951-01 10 27389073 27389073 T - ANKRD26 Frame_Shift_Del p.V62Cfs*12 0.10 TCGA-CK-4951-01 10 27448589 27448589 A G MASTL Silent p.L122L 0.22 TCGA-CK-4951-01 10 30318224 30318224 G A KIAA1462 Missense_Mutation p.P285S 0.44 tolerated(0.05) possibly_damaging(0.527) TCGA-CK-4951-01 10 30630487 30630487 T C MTPAP Missense_Mutation p.I80M 0.19 deleterious(0) probably_damaging(0.937) TCGA-CK-4951-01 10 30749750 30749750 G A MAP3K8 Silent p.T463T 0.30 TCGA-CK-4951-01 10 32306286 32306286 A T KIF5B Nonsense_Mutation p.L849* 0.33 TCGA-CK-4951-01 10 32800717 32800717 G A CCDC7 Intron 0.26 TCGA-CK-4951-01 10 35896976 35896976 C T GJD4 Missense_Mutation p.P179S 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 35929441 35929441 A T FZD8 Missense_Mutation p.F306Y 0.29 deleterious(0.04) probably_damaging(0.996) TCGA-CK-4951-01 10 35929448 35929448 C G FZD8 Missense_Mutation p.E304Q 0.21 tolerated(0.51) possibly_damaging(0.475) TCGA-CK-4951-01 10 38343776 38343776 G A ZNF33A Missense_Mutation p.A242T 0.19 tolerated(1) benign(0.001) TCGA-CK-4951-01 10 43288479 43288479 C T BMS1 Missense_Mutation p.R326C 0.31 deleterious(0) possibly_damaging(0.891) TCGA-CK-4951-01 10 43977082 43977082 T A ZNF487 Silent p.I113I 0.26 TCGA-CK-4951-01 10 45907663 45907663 C T ALOX5 Silent p.F152F 0.38 TCGA-CK-4951-01 10 45939224 45939224 C A ALOX5 Missense_Mutation p.T541N 0.32 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 46146967 46146967 G A ZFAND4 Intron 0.26 TCGA-CK-4951-01 10 47909222 47909222 G A FAM21B Silent p.S264S 0.09 TCGA-CK-4951-01 10 48438525 48438525 G A GDF10 Silent p.D62D 0.47 TCGA-CK-4951-01 10 49658326 49658326 C G ARHGAP22 Missense_Mutation p.E632Q 0.36 deleterious(0.03) benign(0.419) TCGA-CK-4951-01 10 50040723 50040723 G A WDFY4 Missense_Mutation p.R2211Q 0.28 deleterious(0.04) possibly_damaging(0.807) TCGA-CK-4951-01 10 50574201 50574201 G A DRGX Missense_Mutation p.S256F 0.09 deleterious_low_confidence(0.01) benign(0.013) TCGA-CK-4951-01 10 50678243 50678243 G A ERCC6 Missense_Mutation p.L1255F 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 50820021 50820021 G A SLC18A3 Missense_Mutation p.R412H 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 52103737 52103737 T - SGMS1 Frame_Shift_Del p.K46Nfs*18 0.24 TCGA-CK-4951-01 10 53458900 53458900 G - CSTF2T Frame_Shift_Del p.P137Rfs*7 0.30 TCGA-CK-4951-01 10 5540953 5540953 G - CALML5 3'UTR 0.50 TCGA-CK-4951-01 10 5540958 5540958 G A CALML5 3'UTR 0.56 TCGA-CK-4951-01 10 5567746 5567746 C T CALML3 3'UTR 0.30 TCGA-CK-4951-01 10 5948124 5948124 C T FBXO18 Silent p.I145I 0.35 TCGA-CK-4951-01 10 5948129 5948129 C T FBXO18 Missense_Mutation p.P147L 0.33 tolerated(0.07) benign(0.018) TCGA-CK-4951-01 10 6002421 6002421 C T IL15RA Silent p.E164E 0.30 TCGA-CK-4951-01 10 61029718 61029718 C T FAM13C Silent p.Q248Q 0.27 TCGA-CK-4951-01 10 61718815 61718815 G A C10orf40 5'UTR 0.25 TCGA-CK-4951-01 10 61828932 61828932 T C ANK3 Missense_Mutation p.T3903A 0.29 benign(0) TCGA-CK-4951-01 10 64565798 64565798 G A ADO 3'UTR 0.19 TCGA-CK-4951-01 10 70097362 70097362 C T HNRNPH3 Intron 0.38 TCGA-CK-4951-01 10 70101358 70101358 A G HNRNPH3 Silent p.E264E 0.19 TCGA-CK-4951-01 10 70404809 70404809 A - TET1 Frame_Shift_Del p.K776Nfs*19 0.17 TCGA-CK-4951-01 10 70513638 70513638 G A CCAR1 Missense_Mutation p.R383H 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-CK-4951-01 10 70645583 70645583 C T STOX1 Silent p.G677G 0.33 TCGA-CK-4951-01 10 70992661 70992661 G T HKDC1 Missense_Mutation p.G123V 0.23 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 10 70992668 70992668 G A HKDC1 Silent p.E125E 0.31 TCGA-CK-4951-01 10 70998886 70998886 G A HKDC1 Missense_Mutation p.R195K 0.29 tolerated(0.66) benign(0.002) TCGA-CK-4951-01 10 71010167 71010167 G A HKDC1 Silent p.E564E 0.25 TCGA-CK-4951-01 10 71026488 71026488 T A HKDC1 Nonsense_Mutation p.L910* 0.35 TCGA-CK-4951-01 10 71144621 71144621 C T HK1 Missense_Mutation p.P601S 0.35 deleterious(0) benign(0.274) TCGA-CK-4951-01 10 71332554 71332554 C T NEUROG3 Silent p.R82R 0.30 TCGA-CK-4951-01 10 72195731 72195731 C T NODAL Missense_Mutation p.V68M 0.23 tolerated(0.16) benign(0.102) TCGA-CK-4951-01 10 72201274 72201274 G A NODAL Silent p.D50D 0.24 TCGA-CK-4951-01 10 72201392 72201392 T C NODAL Missense_Mutation p.H11R 0.14 deleterious_low_confidence(0.04) benign(0.015) TCGA-CK-4951-01 10 72358402 72358402 C T PRF1 Missense_Mutation p.A359T 0.25 tolerated(0.08) possibly_damaging(0.561) TCGA-CK-4951-01 10 72358430 72358430 C T PRF1 Silent p.L349L 0.23 TCGA-CK-4951-01 10 73581690 73581690 G - PSAP Frame_Shift_Del p.A285Pfs*38 0.31 TCGA-CK-4951-01 10 73767218 73767218 C T CHST3 Silent p.T143T 0.45 TCGA-CK-4951-01 10 73767710 73767710 G A CHST3 Silent p.L307L 0.58 TCGA-CK-4951-01 10 73887890 73887890 T C ASCC1 Missense_Mutation p.K331E 0.37 tolerated(0.08) possibly_damaging(0.574) TCGA-CK-4951-01 10 74673076 74673076 G A OIT3 Silent p.L267L 0.30 TCGA-CK-4951-01 10 75101229 75101229 A T TTC18 Silent p.A240A 0.14 TCGA-CK-4951-01 10 75184220 75184220 A T MSS51 3'UTR 0.16 TCGA-CK-4951-01 10 75198054 75198054 C T PPP3CB Silent p.L508L 0.09 TCGA-CK-4951-01 10 75279666 75279666 C T USP54 Missense_Mutation p.R856Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 10 75406544 75406544 G C SYNPO2L Missense_Mutation p.P956A 0.26 deleterious(0) probably_damaging(0.91) TCGA-CK-4951-01 10 75407530 75407530 G A SYNPO2L Missense_Mutation p.A627V 0.28 deleterious(0) probably_damaging(0.91) TCGA-CK-4951-01 10 75519880 75519880 C T SEC24C Missense_Mutation p.H196Y 0.37 tolerated(1) benign(0.079) TCGA-CK-4951-01 10 75526165 75526165 G A SEC24C Silent p.V555V 0.21 TCGA-CK-4951-01 10 75529220 75529220 T A SEC24C Missense_Mutation p.L847H 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 10 75533236 75533236 C T FUT11 Silent p.L333L 0.28 TCGA-CK-4951-01 10 75565729 75565729 G A NDST2 Missense_Mutation p.P498S 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 75566122 75566122 C T NDST2 Silent p.Q453Q 0.31 TCGA-CK-4951-01 10 75568150 75568150 G - NDST2 5'UTR 0.26 TCGA-CK-4951-01 10 75757882 75757883 CA - VCL 5'UTR 0.43 TCGA-CK-4951-01 10 7604957 7604957 G A ITIH5 3'UTR 0.35 TCGA-CK-4951-01 10 7604960 7604960 G A ITIH5 3'UTR 0.28 TCGA-CK-4951-01 10 76857545 76857545 C T DUSP13 Missense_Mutation p.R83H 0.32 deleterious(0.03) possibly_damaging(0.803) TCGA-CK-4951-01 10 77159848 77159848 G C ZNF503 Silent p.G200G 0.30 TCGA-CK-4951-01 10 79397245 79397245 G A KCNMA1 Silent p.S52S 0.26 TCGA-CK-4951-01 10 79628782 79628782 A G AL391421.1 3'UTR 0.25 TCGA-CK-4951-01 10 81275554 81275554 G A EIF5AL1 3'UTR 0.06 TCGA-CK-4951-01 10 81275621 81275621 A T EIF5AL1 3'UTR 0.10 TCGA-CK-4951-01 10 82275968 82275968 C T TSPAN14 Silent p.S210S 0.33 TCGA-CK-4951-01 10 85909814 85909814 T C GHITM Missense_Mutation p.V199A 0.35 tolerated(0.09) benign(0.064) TCGA-CK-4951-01 10 86130962 86130962 A - CCSER2 Frame_Shift_Del p.N53Ifs*40 0.24 TCGA-CK-4951-01 10 86132037 86132037 T C CCSER2 Missense_Mutation p.L410S 0.30 deleterious(0) probably_damaging(0.928) TCGA-CK-4951-01 10 88425549 88425549 C - OPN4 3'UTR 0.26 TCGA-CK-4951-01 10 88451797 88451797 G A LDB3 Silent p.L346L 0.37 TCGA-CK-4951-01 10 88476426 88476426 G A LDB3 Missense_Mutation p.G530D 0.42 deleterious(0.02) benign(0.051) TCGA-CK-4951-01 10 88696701 88696701 G A MMRN2 Silent p.G883G 0.38 TCGA-CK-4951-01 10 88702926 88702926 C T MMRN2 Missense_Mutation p.A539T 0.33 tolerated(0.53) benign(0.005) TCGA-CK-4951-01 10 88729919 88729919 C T ADIRF Intron 0.20 TCGA-CK-4951-01 10 88730258 88730258 C T ADIRF Silent p.T50T 0.37 TCGA-CK-4951-01 10 89264731 89264731 C A MINPP1 Missense_Mutation p.A20D 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-CK-4951-01 10 89264749 89264749 C T MINPP1 Missense_Mutation p.S26L 0.24 tolerated(0.21) benign(0.096) TCGA-CK-4951-01 10 89622600 89622601 - A KLLN 5'UTR 0.21 TCGA-CK-4951-01 10 91192778 91192779 - A SLC16A12 3'UTR 0.22 TCGA-CK-4951-01 10 92675612 92675612 G A ANKRD1 Missense_Mutation p.A226V 0.28 deleterious(0.01) possibly_damaging(0.877) TCGA-CK-4951-01 10 93610976 93610976 A G TNKS2 Missense_Mutation p.T900A 0.27 deleterious(0) probably_damaging(0.983) TCGA-CK-4951-01 10 93668184 93668184 G A FGFBP3 Silent p.S181S 0.17 TCGA-CK-4951-01 10 93744140 93744140 A T BTAF1 Silent p.T802T 0.28 TCGA-CK-4951-01 10 94051110 94051110 G A MARCH5 5'UTR 0.36 TCGA-CK-4951-01 10 94366472 94366472 G T KIF11 Missense_Mutation p.A103S 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 94449939 94449939 C T HHEX Missense_Mutation p.R66W 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 10 94694100 94694100 G A EXOC6 Silent p.V351V 0.28 TCGA-CK-4951-01 10 95093519 95093519 C T MYOF Missense_Mutation p.G1572D 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 10 95275250 95275250 A G CEP55 Missense_Mutation p.E206G 0.21 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 10 95400759 95400759 G A PDE6C Missense_Mutation p.R607K 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 10 95429531 95429531 T A FRA10AC1 3'UTR 0.29 TCGA-CK-4951-01 10 95552497 95552497 C T LGI1 Intron 0.28 TCGA-CK-4951-01 10 95719441 95719441 G A PIPSL RNA 0.41 TCGA-CK-4951-01 10 95791607 95791607 C T PLCE1 Silent p.G268G 0.09 TCGA-CK-4951-01 10 96084830 96084830 G A PLCE1 Missense_Mutation p.R2301Q 0.40 tolerated_low_confidence(0.21) benign(0.004) TCGA-CK-4951-01 10 96162783 96162783 C T TBC1D12 Missense_Mutation p.S138L 0.29 tolerated_low_confidence(0.07) benign(0.003) TCGA-CK-4951-01 10 96271360 96271360 C A TBC1D12 Silent p.V570V 0.26 TCGA-CK-4951-01 10 96522632 96522632 T C CYP2C19 Splice_Site p.X56_splice 0.27 TCGA-CK-4951-01 10 97096994 97096994 G A SORBS1 Nonsense_Mutation p.R975* 0.29 TCGA-CK-4951-01 10 97380978 97380978 A T ALDH18A1 Nonsense_Mutation p.L426* 0.59 TCGA-CK-4951-01 10 97386503 97386503 G A ALDH18A1 Missense_Mutation p.A370V 0.23 deleterious(0.02) possibly_damaging(0.734) TCGA-CK-4951-01 10 97791900 97791900 G A CC2D2B 3'UTR 0.40 TCGA-CK-4951-01 10 97816979 97816979 G A CCNJ Missense_Mutation p.V239M 0.27 tolerated(0.09) benign(0.023) TCGA-CK-4951-01 10 97922560 97922560 T A ZNF518A RNA 0.33 TCGA-CK-4951-01 10 97923263 97923263 A C ZNF518A RNA 0.33 TCGA-CK-4951-01 10 98469445 98469445 G T PIK3AP1 Nonsense_Mutation p.C103* 0.49 TCGA-CK-4951-01 10 98803228 98803228 G A SLIT1 Silent p.S632S 0.32 TCGA-CK-4951-01 10 98825833 98825833 C T SLIT1 Missense_Mutation p.E142K 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-CK-4951-01 10 99130240 99130240 A T RRP12 Silent p.A887A 0.27 TCGA-CK-4951-01 10 99228778 99228778 C T MMS19 Silent p.V336V 0.32 TCGA-CK-4951-01 10 99330208 99330208 C T UBTD1 Silent p.L204L 0.11 TCGA-CK-4951-01 10 99332354 99332354 G - ANKRD2 5'UTR 0.33 TCGA-CK-4951-01 10 99337658 99337658 G A ANKRD2 Silent p.K90K 0.33 TCGA-CK-4951-01 10 99343386 99343386 C T ANKRD2 Silent p.H329H 0.24 TCGA-CK-4951-01 10 99437741 99437741 G A AVPI1 Missense_Mutation p.A110V 0.28 tolerated(0.1) benign(0.014) TCGA-CK-4951-01 10 99511166 99511166 G A ZFYVE27 Missense_Mutation p.V280M 0.37 deleterious(0) probably_damaging(0.951) TCGA-CK-4951-01 11 1013621 1013621 G A MUC6 Silent p.I2385I 0.42 TCGA-CK-4951-01 11 102195470 102195470 A G BIRC3 Missense_Mutation p.K77R 0.34 deleterious(0.02) probably_damaging(0.938) TCGA-CK-4951-01 11 102195875 102195875 T C BIRC3 Missense_Mutation p.L212S 0.17 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 102220549 102220549 G A BIRC2 5'UTR 0.38 TCGA-CK-4951-01 11 102573841 102573841 T C MMP27 Missense_Mutation p.N117S 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-CK-4951-01 11 103027441 103027441 G A DYNC2H1 Missense_Mutation p.G1357S 0.43 possibly_damaging(0.875) TCGA-CK-4951-01 11 103044790 103044790 T A DYNC2H1 Silent p.L1855L 0.28 TCGA-CK-4951-01 11 105962097 105962097 C T AASDHPPT Nonsense_Mutation p.Q196* 0.27 TCGA-CK-4951-01 11 10673671 10673671 G A MRVI1 Silent p.G42G 0.26 TCGA-CK-4951-01 11 107325228 107325228 T - CWF19L2 Frame_Shift_Del p.K96Rfs*41 0.23 TCGA-CK-4951-01 11 10790017 10790017 G C CTR9 Missense_Mutation p.Q696H 0.28 deleterious(0) possibly_damaging(0.796) TCGA-CK-4951-01 11 107992285 107992285 G A ACAT1 5'UTR 0.38 TCGA-CK-4951-01 11 10800608 10800608 G A CTR9 Missense_Mutation p.A1160T 0.20 tolerated_low_confidence(0.17) possibly_damaging(0.483) TCGA-CK-4951-01 11 10822612 10822612 G A EIF4G2 Missense_Mutation p.S479L 0.32 deleterious(0.01) benign(0.357) TCGA-CK-4951-01 11 10875317 10875317 T C ZBED5 Silent p.L392L 0.25 TCGA-CK-4951-01 11 10875826 10875826 T C ZBED5 Missense_Mutation p.K223E 0.42 tolerated(0.13) probably_damaging(0.95) TCGA-CK-4951-01 11 1096350 1096350 G A MUC2 Silent p.P2125P 0.20 TCGA-CK-4951-01 11 111168622 111168622 C T COLCA1 5'UTR 0.33 TCGA-CK-4951-01 11 111473336 111473336 G A SIK2 Missense_Mutation p.V17M 0.16 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 11 111473357 111473357 G A SIK2 Missense_Mutation p.G24S 0.18 deleterious(0.04) possibly_damaging(0.739) TCGA-CK-4951-01 11 113102982 113102982 C T NCAM1 Missense_Mutation p.A493V 0.30 tolerated(0.14) benign(0.127) TCGA-CK-4951-01 11 113205739 113205739 G A TTC12 Missense_Mutation p.A186T 0.17 deleterious(0) probably_damaging(0.98) TCGA-CK-4951-01 11 113264432 113264432 C T ANKK1 Missense_Mutation p.P139S 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-CK-4951-01 11 113270617 113270617 G A ANKK1 Silent p.V642V 0.55 TCGA-CK-4951-01 11 113281557 113281557 G A DRD2 Silent p.Y408Y 0.34 TCGA-CK-4951-01 11 113604276 113604276 A T ZW10 3'UTR 0.44 TCGA-CK-4951-01 11 11373687 11373687 A G CSNK2A3 Missense_Mutation p.V327A 0.27 deleterious(0) benign(0.185) TCGA-CK-4951-01 11 113857253 113857253 G A HTR3A Missense_Mutation p.R246Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 11 114118023 114118023 C T ZBTB16 Silent p.C576C 0.32 TCGA-CK-4951-01 11 114121309 114121309 G A ZBTB16 3'UTR 0.28 TCGA-CK-4951-01 11 114183186 114183186 G A NNMT Missense_Mutation p.S261N 0.30 tolerated(0.52) benign(0) TCGA-CK-4951-01 11 1155566 1155566 G C MUC5AC Missense_Mutation p.G85A 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 1161817 1161819 GGT - MUC5AC Splice_Site p.X502_splice 0.29 TCGA-CK-4951-01 11 116661132 116661132 G C APOA5 Silent p.G271G 0.24 TCGA-CK-4951-01 11 116692191 116692191 C T APOA4 Missense_Mutation p.E195K 0.19 tolerated(0.11) benign(0.23) TCGA-CK-4951-01 11 117089817 117089817 C T PCSK7 Missense_Mutation p.G463S 0.23 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 11 117096714 117096714 G A PCSK7 Missense_Mutation p.L265F 0.36 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 11 117115197 117115197 C T RNF214 Missense_Mutation p.R239C 0.36 tolerated(0.06) benign(0.017) TCGA-CK-4951-01 11 117152614 117152614 A G RNF214 Missense_Mutation p.D447G 0.35 deleterious(0.03) possibly_damaging(0.893) TCGA-CK-4951-01 11 117163862 117163862 A G BACE1 Missense_Mutation p.W250R 0.10 deleterious(0) probably_damaging(0.946) TCGA-CK-4951-01 11 117698780 117698780 C T FXYD2 5'Flank 0.25 TCGA-CK-4951-01 11 118343049 118343049 C T KMT2A Missense_Mutation p.A392V 0.37 probably_damaging(0.97) TCGA-CK-4951-01 11 118392877 118392877 T A KMT2A Missense_Mutation p.F3970Y 0.27 probably_damaging(0.916) TCGA-CK-4951-01 11 118404169 118404169 G A TMEM25 Silent p.L236L 0.24 TCGA-CK-4951-01 11 118498201 118498201 C A PHLDB1 Missense_Mutation p.P221Q 0.23 deleterious(0) probably_damaging(0.961) TCGA-CK-4951-01 11 118529627 118529627 G A TREH Missense_Mutation p.A511V 0.29 tolerated(0.08) benign(0.034) TCGA-CK-4951-01 11 118765660 118765660 G A BCL9L 3'UTR 0.31 TCGA-CK-4951-01 11 118769148 118769148 G A BCL9L Silent p.G1492G 0.09 TCGA-CK-4951-01 11 118774134 118774134 G A BCL9L Missense_Mutation p.A187V 0.29 benign(0) TCGA-CK-4951-01 11 118898492 118898492 T A SLC37A4 Missense_Mutation p.I158F 0.41 tolerated(0.73) benign(0.001) TCGA-CK-4951-01 11 118918517 118918517 T A HYOU1 Missense_Mutation p.I842F 0.20 tolerated(0.24) benign(0.002) TCGA-CK-4951-01 11 118919015 118919015 T A HYOU1 Missense_Mutation p.K774M 0.27 tolerated(0.06) benign(0.043) TCGA-CK-4951-01 11 118921765 118921765 G A HYOU1 Silent p.G549G 0.45 TCGA-CK-4951-01 11 119045980 119045980 C T NLRX1 Silent p.I556I 0.19 TCGA-CK-4951-01 11 119050874 119050874 T C NLRX1 Missense_Mutation p.V715A 0.37 tolerated(0.19) probably_damaging(0.99) TCGA-CK-4951-01 11 119058089 119058089 C A PDZD3 Silent p.P147P 0.21 TCGA-CK-4951-01 11 119149381 119149381 T C CBL Silent p.A463A 0.22 TCGA-CK-4951-01 11 119183297 119183297 G A MCAM Silent p.R267R 0.36 TCGA-CK-4951-01 11 11969544 11969544 T C USP47 Silent p.H980H 0.20 TCGA-CK-4951-01 11 11976696 11976696 C T USP47 Missense_Mutation p.A1225V 0.22 tolerated(0.25) possibly_damaging(0.895) TCGA-CK-4951-01 11 121414425 121414425 G A SORL1 Silent p.T618T 0.23 TCGA-CK-4951-01 11 121429474 121429474 C T SORL1 Silent p.I946I 0.31 TCGA-CK-4951-01 11 12241936 12241936 C T MICAL2 Silent p.N379N 0.30 TCGA-CK-4951-01 11 123848167 123848167 G A OR10S1 Missense_Mutation p.H78Y 0.20 deleterious(0.04) possibly_damaging(0.889) TCGA-CK-4951-01 11 124012400 124012400 G A VWA5A Missense_Mutation p.D659N 0.21 tolerated(0.64) benign(0.001) TCGA-CK-4951-01 11 1244342 1244342 C T MUC5B 5'UTR 0.29 TCGA-CK-4951-01 11 124623679 124623679 T C ESAM Missense_Mutation p.R346G 0.21 tolerated(0.37) benign(0.001) TCGA-CK-4951-01 11 124632015 124632015 C T ESAM Silent p.L12L 0.29 TCGA-CK-4951-01 11 124754639 124754639 C T ROBO4 3'UTR 0.48 TCGA-CK-4951-01 11 1251295 1251295 G A MUC5B Silent p.V427V 0.33 TCGA-CK-4951-01 11 125221239 125221239 T C PKNOX2 Missense_Mutation p.M13T 0.28 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-CK-4951-01 11 125365262 125365262 G A AP000708.1 Missense_Mutation p.G13E 0.27 tolerated_low_confidence(1) probably_damaging(0.969) TCGA-CK-4951-01 11 125831726 125831726 C T CDON Missense_Mutation p.S1175N 0.44 tolerated(0.58) benign(0.001) TCGA-CK-4951-01 11 1258318 1258318 A G MUC5B Missense_Mutation p.N1074S 0.22 unknown(0) TCGA-CK-4951-01 11 126075453 126075453 G A RPUSD4 Missense_Mutation p.R236C 0.42 deleterious(0.04) benign(0.098) TCGA-CK-4951-01 11 126120416 126120416 C T FAM118B Nonsense_Mutation p.R119* 0.29 TCGA-CK-4951-01 11 126314950 126314950 G A KIRREL3 Silent p.D392D 0.44 TCGA-CK-4951-01 11 1263440 1263440 C T MUC5B Missense_Mutation p.T1777I 0.26 unknown(0) TCGA-CK-4951-01 11 1264872 1264872 C T MUC5B Silent p.S2254S 0.37 TCGA-CK-4951-01 11 1269039 1269039 C A MUC5B Silent p.V3643V 0.31 TCGA-CK-4951-01 11 1270929 1270929 G A MUC5B Silent p.P4273P 0.28 TCGA-CK-4951-01 11 1271457 1271457 C T MUC5B Silent p.I4449I 0.29 TCGA-CK-4951-01 11 1282677 1282677 G A MUC5B Missense_Mutation p.V5710I 0.38 unknown(0) TCGA-CK-4951-01 11 12886393 12886393 T C TEAD1 Silent p.S92S 0.30 TCGA-CK-4951-01 11 129784807 129784807 A G PRDM10 Missense_Mutation p.V882A 0.34 tolerated(0.05) probably_damaging(0.987) TCGA-CK-4951-01 11 129992296 129992296 C T APLP2 Silent p.D270D 0.17 TCGA-CK-4951-01 11 130284449 130284449 C T ADAMTS8 Missense_Mutation p.E515K 0.22 tolerated(1) benign(0.003) TCGA-CK-4951-01 11 130289037 130289037 G T ADAMTS8 Missense_Mutation p.R291S 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 130785118 130785118 G A SNX19 Silent p.V239V 0.34 TCGA-CK-4951-01 11 131781371 131781371 C T NTM 5'UTR 0.29 TCGA-CK-4951-01 11 132290135 132290136 AC - OPCML Frame_Shift_Del p.C330Sfs*73 0.29 TCGA-CK-4951-01 11 134076549 134076549 G - NCAPD3 Frame_Shift_Del p.A322Lfs*24 0.22 TCGA-CK-4951-01 11 134119814 134119814 C T THYN1 Missense_Mutation p.A98T 0.36 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 11 14481817 14481817 A G COPB1 Silent p.D861D 0.24 TCGA-CK-4951-01 11 1457306 1457306 A G BRSK2 Missense_Mutation p.Q89R 0.31 tolerated(0.15) possibly_damaging(0.804) TCGA-CK-4951-01 11 1459557 1459557 C T BRSK2 Silent p.L116L 0.34 TCGA-CK-4951-01 11 1579422 1579422 C T DUSP8 Missense_Mutation p.S206N 0.24 tolerated(0.06) benign(0.309) TCGA-CK-4951-01 11 1586959 1586959 C T DUSP8 Missense_Mutation p.R33H 0.24 deleterious(0.02) possibly_damaging(0.836) TCGA-CK-4951-01 11 1718947 1718947 G T KRTAP5-6 3'UTR 0.28 TCGA-CK-4951-01 11 17633850 17633850 C T OTOG Missense_Mutation p.R2101C 0.29 possibly_damaging(0.8) TCGA-CK-4951-01 11 18028191 18028191 C T SERGEF Missense_Mutation p.G100D 0.28 tolerated(0.08) benign(0.078) TCGA-CK-4951-01 11 18195800 18195800 C T MRGPRX4 3'UTR 0.32 TCGA-CK-4951-01 11 18955974 18955974 G A MRGPRX1 Missense_Mutation p.R120C 0.22 deleterious(0.01) possibly_damaging(0.458) TCGA-CK-4951-01 11 20089731 20089731 G C NAV2 Splice_Site p.X1685_splice 0.29 TCGA-CK-4951-01 11 20388759 20388759 G A HTATIP2 Missense_Mutation p.A113T 0.34 deleterious(0.03) benign(0.05) TCGA-CK-4951-01 11 2154073 2154073 G A IGF2 3'UTR 0.44 TCGA-CK-4951-01 11 2154863 2154863 G A IGF2 Missense_Mutation p.R120C 0.36 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 11 22283794 22283794 G T ANO5 Missense_Mutation p.G584C 0.32 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 22291913 22291913 T A ANO5 Missense_Mutation p.Y652N 0.29 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 11 22851259 22851259 C T SVIP Silent p.A12A 0.14 TCGA-CK-4951-01 11 2424922 2424922 G - TSSC4 3'UTR 0.31 TCGA-CK-4951-01 11 2442390 2442390 C T TRPM5 Missense_Mutation p.A113T 0.33 tolerated(0.32) benign(0.128) TCGA-CK-4951-01 11 250838 250838 G A PSMD13 Silent p.R272R 0.30 TCGA-CK-4951-01 11 27400252 27400252 A G LGR4 Silent p.L345L 0.20 TCGA-CK-4951-01 11 281335 281335 C G NLRP6 Missense_Mutation p.A534G 0.40 tolerated(1) benign(0.001) TCGA-CK-4951-01 11 284391 284391 A T NLRP6 Missense_Mutation p.Q788L 0.33 deleterious(0) benign(0.339) TCGA-CK-4951-01 11 290946 290946 G A ATHL1 Missense_Mutation p.V247M 0.29 tolerated(0.1) benign(0.028) TCGA-CK-4951-01 11 3063440 3063440 G A CARS Silent p.T107T 0.39 TCGA-CK-4951-01 11 3069168 3069168 T G CARS Missense_Mutation p.E30A 0.16 deleterious_low_confidence(0.04) benign(0.002) TCGA-CK-4951-01 11 30915809 30915809 T C DCDC1 Missense_Mutation p.I1627V 0.24 tolerated(0.61) benign(0.068) TCGA-CK-4951-01 11 309275 309275 T A IFITM2 3'UTR 0.35 TCGA-CK-4951-01 11 309334 309334 C T IFITM2 3'UTR 0.43 TCGA-CK-4951-01 11 32461271 32461271 C T WT1 5'Flank 0.21 TCGA-CK-4951-01 11 3249628 3249628 G A MRGPRE Silent p.R133R 0.36 TCGA-CK-4951-01 11 32722357 32722357 A G CCDC73 Missense_Mutation p.C99R 0.10 deleterious(0) benign(0.047) TCGA-CK-4951-01 11 3383067 3383067 G A ZNF195 Silent p.S93S 0.20 TCGA-CK-4951-01 11 33880793 33880793 T A LMO2 3'UTR 0.58 TCGA-CK-4951-01 11 34938210 34938210 C G PDHX Missense_Mutation p.A3G 0.45 deleterious_low_confidence(0.04) benign(0.037) TCGA-CK-4951-01 11 35641090 35641090 C T FJX1 Silent p.F302F 0.20 TCGA-CK-4951-01 11 3660990 3660990 C T ART5 Silent p.L223L 0.24 TCGA-CK-4951-01 11 36614195 36614195 T - RAG2 Frame_Shift_Del p.G509Vfs*6 0.15 TCGA-CK-4951-01 11 3680928 3680928 C T ART1 Missense_Mutation p.A60V 0.28 tolerated(0.17) benign(0.049) TCGA-CK-4951-01 11 3721985 3721985 C T NUP98 Silent p.Q1199Q 0.32 TCGA-CK-4951-01 11 396648 396648 C T PKP3 Silent p.F91F 0.21 TCGA-CK-4951-01 11 40135935 40135935 T A LRRC4C Missense_Mutation p.Q636H 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-4951-01 11 418563 418563 G A ANO9 Silent p.I719I 0.24 TCGA-CK-4951-01 11 44957183 44957183 T C TP53I11 Missense_Mutation p.Y122C 0.22 tolerated(0.09) probably_damaging(0.983) TCGA-CK-4951-01 11 45246340 45246340 C T PRDM11 Missense_Mutation p.P439S 0.44 tolerated_low_confidence(0.11) benign(0.093) TCGA-CK-4951-01 11 45672151 45672151 T C CHST1 Missense_Mutation p.K108R 0.27 tolerated(1) benign(0.004) TCGA-CK-4951-01 11 45935430 45935430 C T PEX16 Missense_Mutation p.R276H 0.36 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 11 46394598 46394598 G A DGKZ Missense_Mutation p.E613K 0.27 deleterious(0.03) benign(0.411) TCGA-CK-4951-01 11 46394652 46394652 G A DGKZ Splice_Site p.X630_splice 0.35 TCGA-CK-4951-01 11 46396187 46396187 A G DGKZ Missense_Mutation p.K687E 0.19 deleterious(0.01) possibly_damaging(0.597) TCGA-CK-4951-01 11 46396322 46396322 G A DGKZ Missense_Mutation p.G699R 0.41 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 11 46397096 46397096 G A DGKZ Missense_Mutation p.A797T 0.22 deleterious(0) possibly_damaging(0.782) TCGA-CK-4951-01 11 46430257 46430257 C T AMBRA1 Splice_Site p.X980_splice 0.30 TCGA-CK-4951-01 11 46529898 46529898 C T AMBRA1 Missense_Mutation p.A638T 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CK-4951-01 11 46624976 46624976 A G HARBI1 3'UTR 0.36 TCGA-CK-4951-01 11 46666930 46666930 T A ATG13 Silent p.I37I 0.34 TCGA-CK-4951-01 11 46689412 46689412 C G ATG13 Missense_Mutation p.A409G 0.33 deleterious(0) possibly_damaging(0.809) TCGA-CK-4951-01 11 46725907 46725907 T C ZNF408 Silent p.P219P 0.33 TCGA-CK-4951-01 11 46765748 46765748 G A CKAP5 Missense_Mutation p.T1975I 0.31 deleterious(0.02) possibly_damaging(0.521) TCGA-CK-4951-01 11 46765754 46765754 G T CKAP5 Missense_Mutation p.S1973Y 0.31 deleterious(0) possibly_damaging(0.877) TCGA-CK-4951-01 11 46765759 46765759 G A CKAP5 Silent p.V1971V 0.32 TCGA-CK-4951-01 11 46799714 46799714 C T CKAP5 Missense_Mutation p.R908Q 0.42 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 11 47185770 47185770 G A C11orf49 3'Flank 0.32 TCGA-CK-4951-01 11 47267301 47267301 G A ACP2 Nonsense_Mutation p.Q128* 0.32 TCGA-CK-4951-01 11 47283437 47283437 A G NR1H3 Intron 0.20 TCGA-CK-4951-01 11 47380374 47380374 G A SPI1 Intron 0.28 TCGA-CK-4951-01 11 47380451 47380451 G T SPI1 Missense_Mutation p.S147Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 11 47399885 47399885 A T SPI1 Missense_Mutation p.M7K 0.19 deleterious(0) benign(0.1) TCGA-CK-4951-01 11 47647282 47647282 A T MTCH2 Missense_Mutation p.S231R 0.24 deleterious(0.02) possibly_damaging(0.675) TCGA-CK-4951-01 11 47647283 47647283 C T MTCH2 Missense_Mutation p.S231N 0.22 tolerated(0.08) benign(0.012) TCGA-CK-4951-01 11 47825086 47825086 A G NUP160 Silent p.D893D 0.42 TCGA-CK-4951-01 11 4790983 4790983 C T OR51F1 Silent p.Q55Q 0.25 TCGA-CK-4951-01 11 4870246 4870246 G A OR51S1 Missense_Mutation p.R65C 0.24 deleterious(0.01) benign(0.104) TCGA-CK-4951-01 11 49190772 49190772 A T FOLH1 Nonsense_Mutation p.Y449* 0.28 TCGA-CK-4951-01 11 5153679 5153679 A T OR52A5 Nonsense_Mutation p.L65* 0.27 TCGA-CK-4951-01 11 534346 534346 G A HRAS 5'UTR 0.35 TCGA-CK-4951-01 11 552610 552610 C T LRRC56 Missense_Mutation p.A408V 0.31 tolerated(0.11) benign(0.011) TCGA-CK-4951-01 11 5529318 5529318 T C UBQLN3 Missense_Mutation p.M491V 0.32 tolerated_low_confidence(0.42) benign(0.001) TCGA-CK-4951-01 11 556946 556946 G A C11orf35 Missense_Mutation p.R289W 0.35 tolerated(0.05) benign(0.424) TCGA-CK-4951-01 11 55873129 55873129 G A OR8H2 Missense_Mutation p.G204D 0.30 deleterious(0) possibly_damaging(0.862) TCGA-CK-4951-01 11 56185444 56185444 G A OR5R1 Missense_Mutation p.R89C 0.21 deleterious(0.02) benign(0.001) TCGA-CK-4951-01 11 562444 562444 A T RASSF7 Missense_Mutation p.R164W 0.16 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 11 57004353 57004353 G A APLNR Silent p.G42G 0.33 TCGA-CK-4951-01 11 57069367 57069367 G A TNKS1BP1 Missense_Mutation p.P1629S 0.24 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 11 57235276 57235276 C T RTN4RL2 Missense_Mutation p.R76W 0.40 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 11 58207071 58207071 A T OR5B12 Missense_Mutation p.L185H 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CK-4951-01 11 58207356 58207356 A T OR5B12 Missense_Mutation p.I90K 0.28 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-CK-4951-01 11 58477425 58477425 C A GLYAT Silent p.P235P 0.35 TCGA-CK-4951-01 11 58967192 58967192 C T DTX4 Silent p.S524S 0.15 TCGA-CK-4951-01 11 5906319 5906319 G T OR52E4 Missense_Mutation p.G266V 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 59419046 59419046 C T PATL1 Missense_Mutation p.A499T 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-CK-4951-01 11 59481276 59481276 G A OR10V1 Missense_Mutation p.R15C 0.37 tolerated(0.19) benign(0.008) TCGA-CK-4951-01 11 59574079 59574079 C T MRPL16 Missense_Mutation p.R166H 0.42 tolerated(0.42) benign(0.028) TCGA-CK-4951-01 11 59599227 59599227 A G GIF Silent p.S372S 0.11 TCGA-CK-4951-01 11 5968763 5968763 C A OR56A3 Missense_Mutation p.L63M 0.37 tolerated(1) benign(0.004) TCGA-CK-4951-01 11 60694738 60694738 G A TMEM132A Missense_Mutation p.A55T 0.65 tolerated(0.07) possibly_damaging(0.65) TCGA-CK-4951-01 11 607285 607285 C T PHRF1 Missense_Mutation p.A609V 0.25 tolerated(0.06) benign(0.001) TCGA-CK-4951-01 11 60785254 60785254 C T CD6 Missense_Mutation p.H536Y 0.27 tolerated(0.72) benign(0.002) TCGA-CK-4951-01 11 607867 607867 A G PHRF1 Missense_Mutation p.D803G 0.56 deleterious(0.03) probably_damaging(0.999) TCGA-CK-4951-01 11 609695 609695 C T PHRF1 Silent p.S1412S 0.30 TCGA-CK-4951-01 11 610545 610545 C T PHRF1 Silent p.S1486S 0.31 TCGA-CK-4951-01 11 61099077 61099077 G A DDB1 Missense_Mutation p.R50W 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-CK-4951-01 11 61188891 61188891 C T CPSF7 Missense_Mutation p.A125T 0.30 tolerated(0.13) probably_damaging(0.987) TCGA-CK-4951-01 11 613458 613458 C T IRF7 Missense_Mutation p.V342I 0.33 deleterious(0.01) probably_damaging(0.987) TCGA-CK-4951-01 11 613963 613963 C T IRF7 Missense_Mutation p.A265T 0.18 tolerated(0.33) benign(0.018) TCGA-CK-4951-01 11 61495657 61495657 G A DAGLA Silent p.A223A 0.27 TCGA-CK-4951-01 11 61544854 61544854 C T MYRF Missense_Mutation p.A570V 0.14 deleterious(0) benign(0.31) TCGA-CK-4951-01 11 61729978 61729978 A T BEST1 Missense_Mutation p.D391V 0.27 deleterious(0) possibly_damaging(0.809) TCGA-CK-4951-01 11 61730493 61730493 C T BEST1 Missense_Mutation p.R563C 0.25 tolerated_low_confidence(0.15) benign(0.001) TCGA-CK-4951-01 11 619066 619066 C - CDHR5 Frame_Shift_Del p.G498Efs*13 0.27 TCGA-CK-4951-01 11 62159655 62159655 G A ASRGL1 Missense_Mutation p.A276T 0.35 tolerated(0.18) benign(0.12) TCGA-CK-4951-01 11 62289863 62289863 T A AHNAK Missense_Mutation p.H4009L 0.41 benign(0.253) TCGA-CK-4951-01 11 62289874 62289874 G C AHNAK Missense_Mutation p.D4005E 0.36 benign(0.101) TCGA-CK-4951-01 11 62297231 62297231 A C AHNAK Missense_Mutation p.V1553G 0.29 probably_damaging(0.999) TCGA-CK-4951-01 11 62327541 62327541 C T EEF1G Silent p.P385P 0.31 TCGA-CK-4951-01 11 62362742 62362742 C T MTA2 Missense_Mutation p.A493T 0.35 tolerated(0.11) benign(0.073) TCGA-CK-4951-01 11 62370279 62370279 G A EML3 Silent p.D813D 0.16 TCGA-CK-4951-01 11 62384233 62384233 C T B3GAT3 Silent p.V218V 0.41 TCGA-CK-4951-01 11 62384660 62384660 C T B3GAT3 Silent p.T139T 0.42 TCGA-CK-4951-01 11 62396273 62396273 A C GANAB Nonsense_Mutation p.Y738* 0.32 TCGA-CK-4951-01 11 62415288 62415288 C T INTS5 Missense_Mutation p.G755D 0.34 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 11 62415826 62415826 G A INTS5 Missense_Mutation p.R576C 0.33 tolerated(0.05) possibly_damaging(0.747) TCGA-CK-4951-01 11 62416195 62416195 G A INTS5 Missense_Mutation p.R453W 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 11 62417456 62417456 G A RP11-831H9.11 Missense_Mutation p.P93L 0.34 deleterious_low_confidence(0.01) benign(0) TCGA-CK-4951-01 11 6245778 6245778 G A FAM160A2 5'UTR 0.26 TCGA-CK-4951-01 11 62487544 62487544 C T HNRNPUL2 Silent p.K577K 0.21 TCGA-CK-4951-01 11 62533738 62533738 C T POLR2G Silent p.D165D 0.29 TCGA-CK-4951-01 11 62549369 62549369 G A TAF6L Missense_Mutation p.A179T 0.33 deleterious(0) benign(0.121) TCGA-CK-4951-01 11 62569442 62569442 T C NXF1 Missense_Mutation p.Y177C 0.31 tolerated(0.17) benign(0.044) TCGA-CK-4951-01 11 62601102 62601102 C T WDR74 Silent p.R322R 0.29 TCGA-CK-4951-01 11 62601307 62601307 A C WDR74 Missense_Mutation p.L293W 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 62656127 62656127 C T SLC3A2 Missense_Mutation p.H620Y 0.30 tolerated(1) benign(0.01) TCGA-CK-4951-01 11 62677886 62677886 C T CHRM1 Silent p.E229E 0.35 TCGA-CK-4951-01 11 62749344 62749344 G A SLC22A6 Missense_Mutation p.A256V 0.38 tolerated(0.89) benign(0.002) TCGA-CK-4951-01 11 63230969 63230969 T A HRASLS5 3'UTR 0.38 TCGA-CK-4951-01 11 63283825 63283825 G A LGALS12 Missense_Mutation p.R325Q 0.36 tolerated(0.27) benign(0.032) TCGA-CK-4951-01 11 63665710 63665710 C T MARK2 Missense_Mutation p.R99C 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 63764680 63764680 C T OTUB1 Silent p.I194I 0.33 TCGA-CK-4951-01 11 63767792 63767792 C T MACROD1 Missense_Mutation p.A191T 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 11 63990557 63990557 G A FERMT3 Missense_Mutation p.A574T 0.23 tolerated(0.08) benign(0.313) TCGA-CK-4951-01 11 64011533 64011533 C T FKBP2 3'UTR 0.17 TCGA-CK-4951-01 11 64012104 64012104 C T PPP1R14B 3'UTR 0.25 TCGA-CK-4951-01 11 64029895 64029895 C T PLCB3 Silent p.L685L 0.28 TCGA-CK-4951-01 11 64031022 64031022 G A PLCB3 Missense_Mutation p.G803D 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-CK-4951-01 11 64032517 64032517 C - PLCB3 Frame_Shift_Del p.R918Afs*95 0.27 TCGA-CK-4951-01 11 64032933 64032933 G C PLCB3 Missense_Mutation p.Q998H 0.35 tolerated(0.1) possibly_damaging(0.827) TCGA-CK-4951-01 11 64065119 64065119 G A KCNK4 Missense_Mutation p.V219M 0.28 deleterious(0) probably_damaging(0.965) TCGA-CK-4951-01 11 64089122 64089122 C T PRDX5 Missense_Mutation p.L202F 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-CK-4951-01 11 64137355 64137355 G A RPS6KA4 Missense_Mutation p.G596D 0.39 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 11 64397946 64397946 G A NRXN2 Missense_Mutation p.R1229C 0.11 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 11 64419053 64419053 G A NRXN2 Silent p.I864I 0.16 TCGA-CK-4951-01 11 64497263 64497263 C T RASGRP2 Missense_Mutation p.G521D 0.27 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 11 64521089 64521089 G A PYGM Silent p.G435G 0.33 TCGA-CK-4951-01 11 64533463 64533463 G A SF1 Intron 0.17 TCGA-CK-4951-01 11 64533476 64533476 C T SF1 Intron 0.38 TCGA-CK-4951-01 11 64563804 64563804 T C MAP4K2 Silent p.L564L 0.33 TCGA-CK-4951-01 11 64600379 64600379 G A CDC42BPG Silent p.P928P 0.07 TCGA-CK-4951-01 11 64600805 64600805 C T CDC42BPG Missense_Mutation p.G877S 0.27 tolerated(0.07) benign(0.097) TCGA-CK-4951-01 11 64606277 64606277 C T CDC42BPG Missense_Mutation p.R325H 0.56 deleterious(0.01) benign(0.004) TCGA-CK-4951-01 11 64662515 64662515 C T ATG2A Missense_Mutation p.R1916H 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 64673091 64673091 C T ATG2A Silent p.A1136A 0.24 TCGA-CK-4951-01 11 64681297 64681297 G A ATG2A Nonsense_Mutation p.Q196* 0.25 TCGA-CK-4951-01 11 64884517 64884517 G A ZNHIT2 Silent p.S203S 0.08 TCGA-CK-4951-01 11 64897779 64897779 G T SYVN1 Missense_Mutation p.P393H 0.42 tolerated(0.2) unknown(0) TCGA-CK-4951-01 11 64898222 64898222 G A SYVN1 Missense_Mutation p.P339S 0.41 tolerated(0.13) unknown(0) TCGA-CK-4951-01 11 65292702 65292702 C T SCYL1 Silent p.P26P 0.38 TCGA-CK-4951-01 11 65293739 65293739 C T SCYL1 Missense_Mutation p.P174S 0.33 tolerated(0.05) possibly_damaging(0.475) TCGA-CK-4951-01 11 65310671 65310671 G A LTBP3 Missense_Mutation p.A834V 0.52 deleterious(0.03) benign(0.052) TCGA-CK-4951-01 11 65320683 65320683 C T LTBP3 Missense_Mutation p.A339T 0.31 tolerated(0.52) benign(0.002) TCGA-CK-4951-01 11 65341027 65341027 C A FAM89B Missense_Mutation p.P162H 0.42 tolerated(0.14) probably_damaging(0.997) TCGA-CK-4951-01 11 65393161 65393161 G A PCNXL3 Silent p.V1058V 0.36 TCGA-CK-4951-01 11 65396110 65396110 C T PCNXL3 Silent p.I1249I 0.30 TCGA-CK-4951-01 11 65479540 65479540 A G KAT5 5'UTR 0.17 TCGA-CK-4951-01 11 65562081 65562081 C T OVOL1 Missense_Mutation p.R131C 0.36 deleterious(0) probably_damaging(0.966) TCGA-CK-4951-01 11 65617683 65617683 C T SNX32 Silent p.G105G 0.42 TCGA-CK-4951-01 11 65618804 65618804 G A SNX32 Missense_Mutation p.A239T 0.26 deleterious(0.03) benign(0.441) TCGA-CK-4951-01 11 65619958 65619958 C T SNX32 Missense_Mutation p.S283F 0.37 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 11 65619959 65619959 C T SNX32 Silent p.S283S 0.37 TCGA-CK-4951-01 11 65631078 65631078 C A MUS81 Missense_Mutation p.H283N 0.35 tolerated(0.34) benign(0.002) TCGA-CK-4951-01 11 65631290 65631290 T C MUS81 Missense_Mutation p.L326S 0.29 deleterious(0.03) probably_damaging(0.98) TCGA-CK-4951-01 11 65655576 65655576 C T FIBP Missense_Mutation p.R38H 0.50 tolerated(0.15) benign(0.008) TCGA-CK-4951-01 11 65746385 65746385 C T SART1 Missense_Mutation p.A795V 0.30 tolerated(0.06) benign(0.06) TCGA-CK-4951-01 11 65789100 65789100 C T CATSPER1 Missense_Mutation p.A520T 0.53 tolerated(0.06) benign(0.309) TCGA-CK-4951-01 11 66031530 66031530 T A KLC2 Missense_Mutation p.F319Y 0.39 tolerated(0.1) benign(0.002) TCGA-CK-4951-01 11 66082473 66082473 G A CD248 Missense_Mutation p.L676F 0.23 tolerated(0.06) benign(0.312) TCGA-CK-4951-01 11 66101525 66101525 G T RIN1 Missense_Mutation p.L486M 0.41 tolerated(0.14) possibly_damaging(0.83) TCGA-CK-4951-01 11 66109600 66109600 C T BRMS1 Missense_Mutation p.G36S 0.40 tolerated(0.54) possibly_damaging(0.714) TCGA-CK-4951-01 11 66114697 66114697 A T B3GNT1 Missense_Mutation p.L107Q 0.18 tolerated(0.29) benign(0.121) TCGA-CK-4951-01 11 66136050 66136050 C T SLC29A2 Missense_Mutation p.A170T 0.36 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 66299361 66299361 C T BBS1 Intron 0.23 TCGA-CK-4951-01 11 66325246 66325246 G A CTD-3074O7.2 3'Flank 0.33 TCGA-CK-4951-01 11 66357981 66357981 G T CCDC87 Missense_Mutation p.P836T 0.35 tolerated(0.52) benign(0.018) TCGA-CK-4951-01 11 66384271 66384271 C T RBM14-RBM4 Missense_Mutation p.T27M 0.12 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 11 66394022 66394022 C T RBM14 Silent p.S631S 0.43 TCGA-CK-4951-01 11 6644321 6644321 G A DCHS1 Silent p.N2862N 0.18 TCGA-CK-4951-01 11 66454492 66454492 C T SPTBN2 Missense_Mutation p.R2290Q 0.44 tolerated(0.06) benign(0.353) TCGA-CK-4951-01 11 6647428 6647428 G A DCHS1 Missense_Mutation p.S2183F 0.21 deleterious(0.04) benign(0.302) TCGA-CK-4951-01 11 6647434 6647434 G A DCHS1 Missense_Mutation p.P2181L 0.25 tolerated(0.15) benign(0.407) TCGA-CK-4951-01 11 6650921 6650921 C A DCHS1 Missense_Mutation p.A1673S 0.36 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 11 66617803 66617803 C T PC Missense_Mutation p.G869D 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 66617816 66617816 C T PC Missense_Mutation p.E865K 0.25 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 11 67049366 67049366 G A ADRBK1 Silent p.E300E 0.35 TCGA-CK-4951-01 11 67050012 67050012 G A ADRBK1 Missense_Mutation p.G387R 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-CK-4951-01 11 67079399 67079399 T A SSH3 3'UTR 0.36 TCGA-CK-4951-01 11 67177149 67177149 G A TBC1D10C Missense_Mutation p.R422Q 0.42 tolerated_low_confidence(0.11) benign(0.172) TCGA-CK-4951-01 11 67201938 67201938 G A RPS6KB2 Missense_Mutation p.A380T 0.23 deleterious(0.01) benign(0.3) TCGA-CK-4951-01 11 67205821 67205821 G A CORO1B 3'UTR 0.25 TCGA-CK-4951-01 11 67205851 67205851 G A CORO1B Missense_Mutation p.A489V 0.24 tolerated_low_confidence(0.28) benign(0.007) TCGA-CK-4951-01 11 67232293 67232293 G A TMEM134 Silent p.F162F 0.27 TCGA-CK-4951-01 11 67351244 67351244 G A GSTP1 5'UTR 0.36 TCGA-CK-4951-01 11 67353963 67353963 G A GSTP1 Missense_Mutation p.R183H 0.44 deleterious(0.04) benign(0.111) TCGA-CK-4951-01 11 67376138 67376138 G A NDUFV1 Missense_Mutation p.A91T 0.29 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CK-4951-01 11 67782851 67782851 G A ALDH3B1 Silent p.A28A 0.38 TCGA-CK-4951-01 11 67787207 67787207 C T ALDH3B1 Silent p.G167G 0.26 TCGA-CK-4951-01 11 67795302 67795302 G A ALDH3B1 Silent p.G432G 0.32 TCGA-CK-4951-01 11 67795356 67795356 G A ALDH3B1 Silent p.R450R 0.32 TCGA-CK-4951-01 11 67808798 67808798 G A TCIRG1 Silent p.A20A 0.28 TCGA-CK-4951-01 11 67810289 67810289 C T TCIRG1 Nonsense_Mutation p.Q126* 0.36 TCGA-CK-4951-01 11 67838271 67838271 G A CHKA Silent p.I228I 0.34 TCGA-CK-4951-01 11 68125287 68125287 C T LRP5 Missense_Mutation p.H220Y 0.29 deleterious(0.04) probably_damaging(0.99) TCGA-CK-4951-01 11 68171016 68171016 G A LRP5 Silent p.G550G 0.32 TCGA-CK-4951-01 11 68201164 68201164 C T LRP5 Silent p.C1286C 0.23 TCGA-CK-4951-01 11 68207250 68207250 G A LRP5 Missense_Mutation p.A1452T 0.43 tolerated(0.16) benign(0.004) TCGA-CK-4951-01 11 68525014 68525014 G A CPT1A 3'UTR 0.44 TCGA-CK-4951-01 11 68671403 68671403 C A IGHMBP2 5'UTR 0.19 TCGA-CK-4951-01 11 68822787 68822787 C T TPCN2 Silent p.C132C 0.41 TCGA-CK-4951-01 11 68822796 68822796 C T TPCN2 Silent p.V135V 0.42 TCGA-CK-4951-01 11 68840100 68840100 G A TPCN2 Missense_Mutation p.G356E 0.24 tolerated(0.09) possibly_damaging(0.704) TCGA-CK-4951-01 11 68848926 68848926 C T TPCN2 Missense_Mutation p.L550F 0.41 tolerated(0.16) benign(0.232) TCGA-CK-4951-01 11 68851473 68851473 G A TPCN2 Missense_Mutation p.G584R 0.32 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 70009641 70009641 A G ANO1 Intron 0.27 TCGA-CK-4951-01 11 70260657 70260657 G A CTTN Missense_Mutation p.G101S 0.15 deleterious(0.03) probably_damaging(1) TCGA-CK-4951-01 11 71184686 71184686 G A NADSYN1 Missense_Mutation p.R207H 0.19 deleterious(0) benign(0.308) TCGA-CK-4951-01 11 71276953 71276953 G A KRTAP5-10 Missense_Mutation p.C107Y 0.24 unknown(0) TCGA-CK-4951-01 11 71507162 71507162 C T FAM86C1 Missense_Mutation p.P121S 0.29 tolerated_low_confidence(0.18) benign(0.005) TCGA-CK-4951-01 11 71510672 71510672 C T FAM86C1 Silent p.S159S 0.41 TCGA-CK-4951-01 11 71715359 71715359 C T NUMA1 Missense_Mutation p.R2012H 0.27 probably_damaging(0.999) TCGA-CK-4951-01 11 71725350 71725350 C A NUMA1 Missense_Mutation p.A1067S 0.24 benign(0.026) TCGA-CK-4951-01 11 71725989 71725989 C T NUMA1 Missense_Mutation p.E854K 0.28 benign(0.423) TCGA-CK-4951-01 11 71806234 71806234 C T LRTOMT Intron 0.33 TCGA-CK-4951-01 11 71821780 71821780 G A LRTOMT 3'UTR 0.36 TCGA-CK-4951-01 11 722421 722421 C G EPS8L2 Silent p.G360G 0.31 TCGA-CK-4951-01 11 72408981 72408981 C T ARAP1 Silent p.L904L 0.36 TCGA-CK-4951-01 11 726701 726701 G A EPS8L2 Missense_Mutation p.E673K 0.30 deleterious(0) possibly_damaging(0.78) TCGA-CK-4951-01 11 73021250 73021250 C A ARHGEF17 Missense_Mutation p.P523T 0.33 deleterious_low_confidence(0.03) benign(0.01) TCGA-CK-4951-01 11 73388176 73388176 C A RAB6A 3'UTR 0.28 TCGA-CK-4951-01 11 73570958 73570958 A G MRPL48 Silent p.A126A 0.28 TCGA-CK-4951-01 11 73688976 73688976 C T UCP2 Missense_Mutation p.G98S 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-CK-4951-01 11 73717211 73717211 C T UCP3 Intron 0.34 TCGA-CK-4951-01 11 73962033 73962033 C T PPME1 Silent p.G348G 0.28 TCGA-CK-4951-01 11 74413905 74413905 G A CHRDL2 Missense_Mutation p.R352C 0.44 deleterious(0) possibly_damaging(0.828) TCGA-CK-4951-01 11 74716624 74716624 G A NEU3 Missense_Mutation p.R158H 0.27 deleterious(0.02) probably_damaging(1) TCGA-CK-4951-01 11 7509518 7509518 G A OLFML1 Missense_Mutation p.R97Q 0.40 deleterious(0.01) possibly_damaging(0.509) TCGA-CK-4951-01 11 75277851 75277851 C T SERPINH1 Missense_Mutation p.H153Y 0.39 deleterious(0) probably_damaging(0.963) TCGA-CK-4951-01 11 75277862 75277862 C T SERPINH1 Silent p.C156C 0.32 TCGA-CK-4951-01 11 76062563 76062563 G A PRKRIR Missense_Mutation p.T544I 0.30 tolerated(0.07) benign(0.127) TCGA-CK-4951-01 11 76507972 76507972 G T TSKU 3'UTR 0.45 TCGA-CK-4951-01 11 7669638 7669638 C T PPFIBP2 Missense_Mutation p.A556V 0.37 deleterious(0) benign(0.352) TCGA-CK-4951-01 11 76750617 76750617 T C B3GNT6 Missense_Mutation p.S8P 0.30 tolerated(0.11) benign(0.007) TCGA-CK-4951-01 11 76831781 76831781 G A CAPN5 Missense_Mutation p.R438H 0.24 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 11 76867006 76867006 C G MYO7A Missense_Mutation p.I113M 0.27 deleterious(0) possibly_damaging(0.762) TCGA-CK-4951-01 11 76901843 76901843 C T MYO7A Silent p.C1284C 0.28 TCGA-CK-4951-01 11 76919782 76919782 G A MYO7A Silent p.K1995K 0.39 TCGA-CK-4951-01 11 77580785 77580785 G A AAMDC Silent p.Q50Q 0.25 TCGA-CK-4951-01 11 77727772 77727772 T C KCTD14 Missense_Mutation p.D212G 0.31 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 11 78381317 78381317 A G TENM4 Missense_Mutation p.Y2025H 0.30 tolerated(0.13) possibly_damaging(0.659) TCGA-CK-4951-01 11 78482119 78482119 G A TENM4 Silent p.C819C 0.18 TCGA-CK-4951-01 11 7982152 7982152 C T NLRP10 Missense_Mutation p.R336H 0.43 tolerated(0.08) benign(0.001) TCGA-CK-4951-01 11 803171 803171 C T PIDD Intron 0.42 TCGA-CK-4951-01 11 82443792 82443792 G A FAM181B Missense_Mutation p.P327L 0.41 tolerated(0.06) benign(0.013) TCGA-CK-4951-01 11 82444635 82444635 G A FAM181B Missense_Mutation p.P46L 0.50 tolerated(0.46) probably_damaging(0.96) TCGA-CK-4951-01 11 82645382 82645382 T C C11orf82 3'UTR 0.33 TCGA-CK-4951-01 11 82882954 82882954 C T PCF11 Missense_Mutation p.S1252L 0.25 tolerated(0.29) benign(0.002) TCGA-CK-4951-01 11 82888132 82888132 C A PCF11 Missense_Mutation p.L1255I 0.39 tolerated(0.14) benign(0.001) TCGA-CK-4951-01 11 829374 829374 G A EFCAB4A Missense_Mutation p.V98M 0.32 deleterious(0.01) possibly_damaging(0.741) TCGA-CK-4951-01 11 85445634 85445634 A G SYTL2 Silent p.T245T 0.30 TCGA-CK-4951-01 11 86519244 86519244 A T PRSS23 Missense_Mutation p.T187S 0.30 tolerated(0.56) benign(0.175) TCGA-CK-4951-01 11 86520549 86520549 C T PRSS23 3'UTR 0.36 TCGA-CK-4951-01 11 870481 870481 C T CHID1 Silent p.K351K 0.31 TCGA-CK-4951-01 11 87847219 87847219 G A RAB38 Silent p.D191D 0.25 TCGA-CK-4951-01 11 88337977 88337977 G A GRM5 Missense_Mutation p.R435W 0.30 deleterious(0) possibly_damaging(0.846) TCGA-CK-4951-01 11 893486 893486 C T CHID1 Silent p.E239E 0.36 TCGA-CK-4951-01 11 8948692 8948692 T C C11orf16 Silent p.E118E 0.27 TCGA-CK-4951-01 11 9048988 9048988 C T SCUBE2 Missense_Mutation p.R818H 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-CK-4951-01 11 9225711 9225711 C T DENND5A Missense_Mutation p.A149T 0.33 deleterious(0.03) probably_damaging(0.922) TCGA-CK-4951-01 11 92532153 92532153 T A FAT3 Missense_Mutation p.S1992T 0.16 benign(0.099) TCGA-CK-4951-01 11 92565126 92565126 C T FAT3 Missense_Mutation p.L3274F 0.33 probably_damaging(0.916) TCGA-CK-4951-01 11 92569863 92569863 G A FAT3 Silent p.R3406R 0.33 TCGA-CK-4951-01 11 92577458 92577458 A G FAT3 Missense_Mutation p.H3642R 0.23 benign(0) TCGA-CK-4951-01 11 92715147 92715147 T C MTNR1B Missense_Mutation p.M253T 0.25 tolerated(0.08) possibly_damaging(0.461) TCGA-CK-4951-01 11 92715156 92715156 T A MTNR1B Missense_Mutation p.V256E 0.24 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 11 9452438 9452438 A C IPO7 Missense_Mutation p.Q590P 0.30 deleterious(0.02) benign(0.304) TCGA-CK-4951-01 11 94533053 94533053 A G AMOTL1 Missense_Mutation p.R233G 0.31 deleterious(0.04) probably_damaging(0.989) TCGA-CK-4951-01 11 9459717 9459717 G A IPO7 Silent p.Q860Q 0.28 TCGA-CK-4951-01 11 94801794 94801794 C G SRSF8 3'UTR 0.37 TCGA-CK-4951-01 11 94862869 94862869 T - ENDOD1 3'UTR 0.24 TCGA-CK-4951-01 11 95512842 95512842 G T FAM76B Silent p.S207S 0.24 TCGA-CK-4951-01 11 96125634 96125634 A G JRKL 3'UTR 0.35 TCGA-CK-4951-01 12 1005239 1005239 T C WNK1 Silent p.V1862V 0.28 TCGA-CK-4951-01 12 1005276 1005276 A C WNK1 Missense_Mutation p.N1875H 0.29 deleterious(0.04) possibly_damaging(0.719) TCGA-CK-4951-01 12 102025857 102025857 G A MYBPC1 Missense_Mutation p.R141K 0.28 deleterious(0.04) probably_damaging(0.995) TCGA-CK-4951-01 12 102076401 102076401 T A MYBPC1 Missense_Mutation p.N1144K 0.32 tolerated_low_confidence(0.94) benign(0.013) TCGA-CK-4951-01 12 102558378 102558378 A T PARPBP Missense_Mutation p.I220F 0.16 deleterious(0) possibly_damaging(0.629) TCGA-CK-4951-01 12 104149184 104149184 G C STAB2 Silent p.V2273V 0.35 TCGA-CK-4951-01 12 105418093 105418093 T - ALDH1L2 3'UTR 0.19 TCGA-CK-4951-01 12 105515999 105515999 G A KIAA1033 Missense_Mutation p.D257N 0.37 tolerated(0.2) benign(0.138) TCGA-CK-4951-01 12 105534765 105534765 C A KIAA1033 Missense_Mutation p.P550Q 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-CK-4951-01 12 105550524 105550524 C T KIAA1033 Nonsense_Mutation p.R927* 0.30 TCGA-CK-4951-01 12 106824154 106824154 C T POLR3B Missense_Mutation p.S456F 0.12 deleterious(0) possibly_damaging(0.863) TCGA-CK-4951-01 12 107254074 107254074 T C RIC8B Silent p.Y445Y 0.25 TCGA-CK-4951-01 12 107391397 107391397 A T CRY1 Missense_Mutation p.I454N 0.33 deleterious(0) possibly_damaging(0.529) TCGA-CK-4951-01 12 107395078 107395078 C A CRY1 Nonsense_Mutation p.E222* 0.24 TCGA-CK-4951-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.21 TCGA-CK-4951-01 12 108917118 108917118 C T SART3 3'UTR 0.43 TCGA-CK-4951-01 12 109527938 109527938 C T ALKBH2 Missense_Mutation p.G119R 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-CK-4951-01 12 110019266 110019266 C T MVK Silent p.S146S 0.23 TCGA-CK-4951-01 12 110032934 110032934 C T MVK Silent p.S329S 0.30 TCGA-CK-4951-01 12 110226296 110226296 G A TRPV4 Missense_Mutation p.T706I 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 12 110236598 110236598 G A TRPV4 Silent p.L325L 0.20 TCGA-CK-4951-01 12 110370913 110370913 G A GIT2 Missense_Mutation p.T717I 0.20 deleterious(0.05) benign(0.195) TCGA-CK-4951-01 12 110456216 110456216 G A ANKRD13A Missense_Mutation p.R156H 0.24 deleterious(0) probably_damaging(0.976) TCGA-CK-4951-01 12 110503765 110503765 C T C12orf76 5'UTR 0.41 TCGA-CK-4951-01 12 110815321 110815321 G T ANAPC7 Missense_Mutation p.L446I 0.29 deleterious(0.03) benign(0.061) TCGA-CK-4951-01 12 110983816 110983816 G A PPTC7 Silent p.G157G 0.27 TCGA-CK-4951-01 12 111180485 111180485 C T PPP1CC Missense_Mutation p.D10N 0.34 tolerated_low_confidence(0.07) benign(0.012) TCGA-CK-4951-01 12 111786109 111786109 G T CUX2 Missense_Mutation p.A1481S 0.29 tolerated(0.2) benign(0.014) TCGA-CK-4951-01 12 111908019 111908019 A G ATXN2 Missense_Mutation p.I1070T 0.40 benign(0.269) TCGA-CK-4951-01 12 112228248 112228248 C A ALDH2 Missense_Mutation p.P188Q 0.15 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 12 112498099 112498099 C T NAA25 Silent p.A474A 0.34 TCGA-CK-4951-01 12 112509733 112509733 T A NAA25 Missense_Mutation p.L334F 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-CK-4951-01 12 112601469 112601469 G A HECTD4 Silent p.C4112C 0.24 TCGA-CK-4951-01 12 112622465 112622465 C T HECTD4 Silent p.P3289P 0.34 TCGA-CK-4951-01 12 113385903 113385903 C T OAS3 Missense_Mutation p.P343L 0.17 tolerated(0.08) benign(0.016) TCGA-CK-4951-01 12 113448372 113448372 A T OAS2 3'UTR 0.38 TCGA-CK-4951-01 12 113515263 113515263 C T DTX1 Silent p.D98D 0.19 TCGA-CK-4951-01 12 113515271 113515271 C A DTX1 Nonsense_Mutation p.S101* 0.18 TCGA-CK-4951-01 12 113533177 113533177 C T DTX1 Silent p.F532F 0.31 TCGA-CK-4951-01 12 113542072 113542072 C T RASAL1 Missense_Mutation p.R622H 0.21 tolerated(0.14) possibly_damaging(0.828) TCGA-CK-4951-01 12 113592232 113592232 C T CCDC42B Missense_Mutation p.P161L 0.37 tolerated(0.26) benign(0.039) TCGA-CK-4951-01 12 113610241 113610241 G A DDX54 Missense_Mutation p.A399V 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 12 113610361 113610361 G A DDX54 Missense_Mutation p.T359M 0.29 tolerated(0.06) benign(0.092) TCGA-CK-4951-01 12 113623191 113623191 C T DDX54 Silent p.K22K 0.31 TCGA-CK-4951-01 12 113831787 113831787 C T SDS Missense_Mutation p.A230T 0.21 tolerated(0.21) benign(0.005) TCGA-CK-4951-01 12 113872002 113872002 C T SDSL Missense_Mutation p.P140S 0.45 tolerated(1) benign(0.05) TCGA-CK-4951-01 12 115120760 115120760 C - TBX3 Frame_Shift_Del p.Q84Rfs*4 0.28 TCGA-CK-4951-01 12 116429501 116429501 G - MED13L Frame_Shift_Del p.S1087Lfs*27 0.22 TCGA-CK-4951-01 12 116972626 116972626 G A LINC00173 RNA 0.31 TCGA-CK-4951-01 12 116972872 116972872 G A LINC00173 RNA 0.26 TCGA-CK-4951-01 12 118490244 118490244 G T WSB2 Missense_Mutation p.P18H 0.19 deleterious(0.01) possibly_damaging(0.831) TCGA-CK-4951-01 12 118517339 118517339 C T VSIG10 Missense_Mutation p.R246H 0.33 tolerated(0.12) benign(0.022) TCGA-CK-4951-01 12 120427920 120427920 T C CCDC64 Missense_Mutation p.L83P 0.18 tolerated_low_confidence(0.19) benign(0) TCGA-CK-4951-01 12 120534940 120534940 G A RAB35 3'UTR 0.22 TCGA-CK-4951-01 12 120541651 120541651 C G RAB35 Missense_Mutation p.R69P 0.42 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 12 120611514 120611514 T - GCN1L1 Frame_Shift_Del p.T437Pfs*6 0.23 TCGA-CK-4951-01 12 120650317 120650317 G A PXN Missense_Mutation p.H540Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 12 120897722 120897722 T A GATC Nonsense_Mutation p.L124* 0.32 TCGA-CK-4951-01 12 121613282 121613282 G A P2RX7 Splice_Site p.X324_splice 0.30 TCGA-CK-4951-01 12 121622226 121622226 C T P2RX7 Missense_Mutation p.S470F 0.24 deleterious(0.03) benign(0.01) TCGA-CK-4951-01 12 121622258 121622258 A T P2RX7 Missense_Mutation p.S481C 0.28 tolerated(0.18) benign(0.379) TCGA-CK-4951-01 12 122018740 122018740 T - KDM2B Frame_Shift_Del p.K26Rfs*81 0.24 TCGA-CK-4951-01 12 122079333 122079333 C T ORAI1 Silent p.T232T 0.35 TCGA-CK-4951-01 12 122252649 122252649 C T SETD1B Missense_Mutation p.S843L 0.19 unknown(0) TCGA-CK-4951-01 12 122261431 122261431 G A SETD1B Missense_Mutation p.R1606H 0.35 unknown(0) TCGA-CK-4951-01 12 122265845 122265845 G A SETD1B Missense_Mutation p.A1823T 0.26 unknown(0) TCGA-CK-4951-01 12 122687944 122687944 C T LRRC43 Silent p.N642N 0.26 TCGA-CK-4951-01 12 122687972 122687972 C G LRRC43 Missense_Mutation p.R652G 0.36 deleterious(0) benign(0.013) TCGA-CK-4951-01 12 122717516 122717516 C T VPS33A Splice_Site p.X481_splice 0.29 TCGA-CK-4951-01 12 122757386 122757386 C T CLIP1 3'UTR 0.30 TCGA-CK-4951-01 12 122862042 122862042 G A CLIP1 Missense_Mutation p.P184L 0.30 tolerated(0.17) benign(0.029) TCGA-CK-4951-01 12 123062301 123062301 G A KNTC1 Missense_Mutation p.R935Q 0.27 tolerated(0.1) benign(0.005) TCGA-CK-4951-01 12 123214234 123214234 G A HCAR1 Missense_Mutation p.A218V 0.28 deleterious(0) possibly_damaging(0.611) TCGA-CK-4951-01 12 123270278 123270278 A G CCDC62 Missense_Mutation p.T137A 0.37 tolerated(0.07) benign(0.001) TCGA-CK-4951-01 12 123339873 123339873 T A HIP1R Missense_Mutation p.I305N 0.24 deleterious(0) possibly_damaging(0.677) TCGA-CK-4951-01 12 123351957 123351957 G T VPS37B Silent p.P188P 0.45 TCGA-CK-4951-01 12 123414699 123414699 C A ABCB9 Missense_Mutation p.G687V 0.33 deleterious(0.01) benign(0.174) TCGA-CK-4951-01 12 123435071 123435071 C A ABCB9 Missense_Mutation p.G215C 0.38 deleterious(0) benign(0.309) TCGA-CK-4951-01 12 123467043 123467043 A G ARL6IP4 Silent p.L328L 0.33 TCGA-CK-4951-01 12 123489847 123489847 G A PITPNM2 Missense_Mutation p.R298C 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-CK-4951-01 12 123738274 123738274 C T C12orf65 Missense_Mutation p.P18L 0.36 tolerated(0.51) benign(0.001) TCGA-CK-4951-01 12 123782688 123782688 C G SBNO1 Silent p.G1292G 0.31 TCGA-CK-4951-01 12 123984016 123984016 C T RILPL1 Silent p.E176E 0.29 TCGA-CK-4951-01 12 124017776 124017776 T A RILPL1 Missense_Mutation p.D85V 0.42 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 12 124081263 124081263 G A TMED2 Missense_Mutation p.R198Q 0.40 tolerated(0.1) benign(0.135) TCGA-CK-4951-01 12 124156647 124156647 G T TCTN2 Nonsense_Mutation p.E79* 0.27 TCGA-CK-4951-01 12 124323104 124323104 C T DNAH10 Silent p.C1550C 0.23 TCGA-CK-4951-01 12 124416380 124416380 G A DNAH10 Missense_Mutation p.A4254T 0.35 benign(0.021) TCGA-CK-4951-01 12 124497409 124497409 A G ZNF664 Missense_Mutation p.T240A 0.28 tolerated(0.05) benign(0.005) TCGA-CK-4951-01 12 124796406 124796406 C - FAM101A Frame_Shift_Del p.R4Gfs*13 0.32 TCGA-CK-4951-01 12 124817805 124817805 G A NCOR2 Missense_Mutation p.T2209M 0.25 probably_damaging(0.938) TCGA-CK-4951-01 12 125396561 125396561 C T UBC Missense_Mutation p.R586H 0.28 tolerated(0.09) probably_damaging(0.992) TCGA-CK-4951-01 12 12630252 12630252 G A DUSP16 Nonsense_Mutation p.R505* 0.28 TCGA-CK-4951-01 12 12871115 12871115 G A CDKN1B Silent p.P114P 0.33 TCGA-CK-4951-01 12 128899578 128899578 G A TMEM132C Nonsense_Mutation p.W129* 0.31 TCGA-CK-4951-01 12 130648135 130648135 C T FZD10 Silent p.D216D 0.12 TCGA-CK-4951-01 12 130648138 130648138 G A FZD10 Silent p.V217V 0.21 TCGA-CK-4951-01 12 132404629 132404629 G A ULK1 Missense_Mutation p.R970H 0.34 tolerated(0.12) possibly_damaging(0.824) TCGA-CK-4951-01 12 132502136 132502136 G A EP400 Missense_Mutation p.R1327Q 0.30 unknown(0) TCGA-CK-4951-01 12 132502145 132502145 G A EP400 Missense_Mutation p.R1330H 0.27 unknown(0) TCGA-CK-4951-01 12 132824542 132824542 C T GALNT9 Missense_Mutation p.R32H 0.25 deleterious(0) possibly_damaging(0.715) TCGA-CK-4951-01 12 133202825 133202825 C T POLE Missense_Mutation p.E2137K 0.27 deleterious(0.01) probably_damaging(0.941) TCGA-CK-4951-01 12 133319790 133319790 G T ANKLE2 Missense_Mutation p.H435N 0.31 deleterious(0) benign(0.173) TCGA-CK-4951-01 12 133373213 133373213 T C GOLGA3 Missense_Mutation p.Q671R 0.33 deleterious(0.03) possibly_damaging(0.69) TCGA-CK-4951-01 12 133398686 133398686 C T GOLGA3 Missense_Mutation p.G10D 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.818) TCGA-CK-4951-01 12 14577873 14577873 G A ATF7IP Missense_Mutation p.D342N 0.27 tolerated_low_confidence(0.53) possibly_damaging(0.728) TCGA-CK-4951-01 12 14656718 14656718 A T PLBD1 Silent p.L550L 0.28 TCGA-CK-4951-01 12 14659889 14659889 C T PLBD1 Missense_Mutation p.M450I 0.32 tolerated(0.05) probably_damaging(0.991) TCGA-CK-4951-01 12 14659907 14659907 C T PLBD1 Silent p.V444V 0.33 TCGA-CK-4951-01 12 14927593 14927593 C T H2AFJ Silent p.I63I 0.17 TCGA-CK-4951-01 12 14928060 14928060 A T H2AFJ 3'UTR 0.37 TCGA-CK-4951-01 12 14930629 14930629 C T H2AFJ 3'UTR 0.41 TCGA-CK-4951-01 12 1702227 1702227 T A FBXL14 Missense_Mutation p.N336Y 0.15 tolerated(0.07) benign(0.21) TCGA-CK-4951-01 12 21661361 21661361 A G GOLT1B Silent p.R54R 0.21 TCGA-CK-4951-01 12 22680828 22680828 T A C2CD5 Splice_Site p.X60_splice 0.34 TCGA-CK-4951-01 12 22697050 22697050 C T C2CD5 Missense_Mutation p.G12E 0.22 deleterious(0) probably_damaging(0.968) TCGA-CK-4951-01 12 23818466 23818466 G A SOX5 Silent p.P281P 0.26 TCGA-CK-4951-01 12 26639055 26639055 A T ITPR2 Missense_Mutation p.N1931K 0.29 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 12 266770 266770 G A IQSEC3 Missense_Mutation p.A785T 0.24 deleterious(0) probably_damaging(0.989) TCGA-CK-4951-01 12 26835521 26835521 G A ITPR2 Missense_Mutation p.P412S 0.15 deleterious(0) probably_damaging(0.985) TCGA-CK-4951-01 12 27234176 27234176 C T C12orf71 Silent p.T247T 0.21 TCGA-CK-4951-01 12 27571076 27571076 C T ARNTL2 Missense_Mutation p.A574V 0.37 tolerated(0.09) benign(0.394) TCGA-CK-4951-01 12 2764329 2764329 C T CACNA1C Missense_Mutation p.A1434V 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-CK-4951-01 12 27876980 27876980 A T MRPS35 Missense_Mutation p.D128V 0.27 deleterious(0.04) benign(0.372) TCGA-CK-4951-01 12 27915884 27915884 G C MANSC4 Missense_Mutation p.H270Q 0.25 tolerated(0.06) benign(0.011) TCGA-CK-4951-01 12 2929890 2929890 G T ITFG2 Missense_Mutation p.V183L 0.30 deleterious(0.01) benign(0.066) TCGA-CK-4951-01 12 2930021 2930021 G A ITFG2 Silent p.G226G 0.25 TCGA-CK-4951-01 12 2930475 2930475 G A ITFG2 Missense_Mutation p.R248H 0.40 tolerated(0.07) probably_damaging(0.932) TCGA-CK-4951-01 12 3000112 3000112 G A TULP3 5'UTR 0.35 TCGA-CK-4951-01 12 30806009 30806009 G T IPO8 Missense_Mutation p.L656I 0.30 deleterious(0.04) benign(0.194) TCGA-CK-4951-01 12 3120179 3120179 A T TEAD4 Missense_Mutation p.E79V 0.41 deleterious(0) probably_damaging(0.939) TCGA-CK-4951-01 12 3149679 3149679 G C TEAD4 3'UTR 0.47 TCGA-CK-4951-01 12 31605235 31605235 A G DENND5B Missense_Mutation p.M423T 0.29 tolerated(0.3) benign(0) TCGA-CK-4951-01 12 31632901 31632901 A T DENND5B Missense_Mutation p.Y176N 0.29 tolerated(0.28) benign(0.007) TCGA-CK-4951-01 12 39745682 39745682 A - KIF21A Frame_Shift_Del p.S524Lfs*15 0.19 TCGA-CK-4951-01 12 406311 406311 T A KDM5A Missense_Mutation p.E1377V 0.22 deleterious(0.02) benign(0.164) TCGA-CK-4951-01 12 419071 419071 T - KDM5A Frame_Shift_Del p.V1093* 0.22 TCGA-CK-4951-01 12 44238626 44238626 T C TMEM117 Missense_Mutation p.Y58H 0.30 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 12 4554722 4554722 C T FGF6 Silent p.Q5Q 0.17 TCGA-CK-4951-01 12 4708326 4708326 C G DYRK4 Silent p.L231L 0.21 TCGA-CK-4951-01 12 4796280 4796280 C T NDUFA9 3'UTR 0.44 TCGA-CK-4951-01 12 4796348 4796348 C T NDUFA9 3'UTR 0.33 TCGA-CK-4951-01 12 48131380 48131380 G A RAPGEF3 Silent p.L914L 0.27 TCGA-CK-4951-01 12 48140655 48140655 A T RAPGEF3 Silent p.S528S 0.25 TCGA-CK-4951-01 12 48191983 48191983 C T HDAC7 Silent p.V123V 0.30 TCGA-CK-4951-01 12 48251003 48251003 C T VDR Silent p.G214G 0.34 TCGA-CK-4951-01 12 48367278 48367278 C T COL2A1 Missense_Mutation p.R1459H 0.41 unknown(0) TCGA-CK-4951-01 12 48458855 48458855 A T SENP1 Missense_Mutation p.I423N 0.34 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 12 48723402 48723402 C T H1FNT Missense_Mutation p.R110W 0.26 deleterious(0) probably_damaging(0.942) TCGA-CK-4951-01 12 49165558 49165558 C T ADCY6 Missense_Mutation p.E996K 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 12 49171499 49171499 T C ADCY6 Silent p.V345V 0.23 TCGA-CK-4951-01 12 4920085 4920085 G A KCNA6 Missense_Mutation p.R293Q 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-CK-4951-01 12 49332714 49332714 T C ARF3 3'UTR 0.29 TCGA-CK-4951-01 12 49332731 49332731 C T ARF3 Silent p.%3D 0.29 TCGA-CK-4951-01 12 49374461 49374461 G T WNT1 Missense_Mutation p.A205S 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 12 49431183 49431183 C T KMT2D Missense_Mutation p.G3319D 0.29 benign(0.386) TCGA-CK-4951-01 12 49483679 49483679 C T DHH Missense_Mutation p.R385Q 0.21 tolerated(0.6) benign(0.083) TCGA-CK-4951-01 12 49496120 49496120 A G LMBR1L Missense_Mutation p.L270P 0.30 deleterious(0.02) possibly_damaging(0.875) TCGA-CK-4951-01 12 49692244 49692244 A G PRPH 3'UTR 0.30 TCGA-CK-4951-01 12 49719558 49719558 C T TROAP Missense_Mutation p.P175L 0.26 tolerated(0.05) probably_damaging(0.963) TCGA-CK-4951-01 12 49724141 49724141 C T TROAP Missense_Mutation p.L505F 0.36 tolerated(0.16) benign(0.013) TCGA-CK-4951-01 12 49742893 49742893 C T DNAJC22 Missense_Mutation p.R80C 0.53 deleterious(0.04) benign(0.064) TCGA-CK-4951-01 12 49933254 49933254 G A KCNH3 Missense_Mutation p.A19T 0.35 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 12 50035747 50035747 A T PRPF40B Silent p.I608I 0.33 TCGA-CK-4951-01 12 50036891 50036891 G A FMNL3 3'UTR 0.22 TCGA-CK-4951-01 12 5024688 5024688 C T KCNA1 3'UTR 0.37 TCGA-CK-4951-01 12 50283309 50283309 C T FAIM2 Silent p.T202T 0.38 TCGA-CK-4951-01 12 50344753 50344753 C T AQP2 Missense_Mutation p.A47V 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 12 50349208 50349208 C T AQP2 Silent p.G211G 0.28 TCGA-CK-4951-01 12 50471898 50471898 C T ASIC1 Silent p.C275C 0.38 TCGA-CK-4951-01 12 50500657 50500657 T C GPD1 Missense_Mutation p.V190A 0.32 deleterious(0.04) benign(0.162) TCGA-CK-4951-01 12 51074491 51074491 C T DIP2B Missense_Mutation p.T384I 0.36 deleterious(0.03) possibly_damaging(0.581) TCGA-CK-4951-01 12 51086796 51086796 G A DIP2B Silent p.A573A 0.24 TCGA-CK-4951-01 12 51759238 51759238 C T GALNT6 Missense_Mutation p.V264M 0.29 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 12 51759253 51759253 C T GALNT6 Missense_Mutation p.V259M 0.41 deleterious(0.04) benign(0.073) TCGA-CK-4951-01 12 52056816 52056816 T A SCN8A Missense_Mutation p.I72N 0.13 deleterious(0) benign(0.123) TCGA-CK-4951-01 12 52369092 52369092 G A ACVR1B Silent p.T45T 0.35 TCGA-CK-4951-01 12 52385824 52385824 A C ACVR1B Intron 0.30 TCGA-CK-4951-01 12 52451148 52451148 C G NR4A1 Silent p.G471G 0.31 TCGA-CK-4951-01 12 52714936 52714936 C T KRT83 Missense_Mutation p.G62S 0.27 tolerated(0.2) benign(0.087) TCGA-CK-4951-01 12 52756206 52756206 G A KRT85 Missense_Mutation p.A376V 0.33 tolerated(0.12) possibly_damaging(0.649) TCGA-CK-4951-01 12 52789965 52789965 C G KRT82 Missense_Mutation p.A374P 0.20 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 12 52863631 52863631 C A KRT6C Missense_Mutation p.G416V 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 12 53096841 53096841 G A KRT77 Silent p.G126G 0.34 TCGA-CK-4951-01 12 53200780 53200780 G A KRT4 3'UTR 0.31 TCGA-CK-4951-01 12 53200797 53200797 G A KRT4 3'UTR 0.23 TCGA-CK-4951-01 12 53204577 53204577 C T KRT4 Missense_Mutation p.R234H 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-CK-4951-01 12 53344590 53344590 G A KRT18 Missense_Mutation p.R186H 0.33 tolerated(0.23) benign(0.008) TCGA-CK-4951-01 12 53431274 53431274 A T EIF4B Missense_Mutation p.K463I 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-CK-4951-01 12 53589162 53589162 T C ITGB7 Missense_Mutation p.Y386C 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 12 53647013 53647013 G C MFSD5 Missense_Mutation p.V239L 0.37 tolerated(0.47) benign(0.007) TCGA-CK-4951-01 12 53663413 53663413 C T ESPL1 Silent p.I229I 0.27 TCGA-CK-4951-01 12 53664518 53664518 C T ESPL1 Silent p.V435V 0.14 TCGA-CK-4951-01 12 53676087 53676087 G A ESPL1 Missense_Mutation p.D887N 0.25 tolerated(0.91) benign(0.001) TCGA-CK-4951-01 12 53722427 53722427 G A SP7 Missense_Mutation p.R267C 0.28 deleterious(0) benign(0.08) TCGA-CK-4951-01 12 53880875 53880875 G A MAP3K12 Missense_Mutation p.R101W 0.50 deleterious(0.02) possibly_damaging(0.866) TCGA-CK-4951-01 12 53928362 53928362 A T ATF7 Missense_Mutation p.Y162N 0.27 tolerated(0.34) probably_damaging(0.916) TCGA-CK-4951-01 12 54379409 54379409 T C HOXC10 Silent p.S122S 0.44 TCGA-CK-4951-01 12 54396381 54396381 G A HOXC9 Missense_Mutation p.V236I 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-CK-4951-01 12 54396398 54396398 G A HOXC9 Silent p.Q241Q 0.25 TCGA-CK-4951-01 12 54639901 54639901 T C CBX5 Silent p.K141K 0.29 TCGA-CK-4951-01 12 54676396 54676396 G A HNRNPA1 Missense_Mutation p.G208D 0.43 tolerated(0.09) unknown(0) TCGA-CK-4951-01 12 54812988 54812988 C T ITGA5 5'UTR 0.23 TCGA-CK-4951-01 12 55945706 55945706 G A OR6C4 Silent p.R232R 0.26 TCGA-CK-4951-01 12 56320867 56320867 C T WIBG Intron 0.35 TCGA-CK-4951-01 12 56514623 56514623 C T ZC3H10 Missense_Mutation p.R93C 0.26 deleterious(0) possibly_damaging(0.791) TCGA-CK-4951-01 12 56647073 56647073 G A ANKRD52 Missense_Mutation p.R367W 0.39 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 12 56668786 56668786 C T CS Silent p.Q306Q 0.12 TCGA-CK-4951-01 12 56676673 56676673 C T CS Missense_Mutation p.V124I 0.32 tolerated(0.08) benign(0.008) TCGA-CK-4951-01 12 56740359 56740359 C T STAT2 Silent p.Q637Q 0.31 TCGA-CK-4951-01 12 56865979 56865979 C T GLS2 Silent p.R504R 0.40 TCGA-CK-4951-01 12 56975620 56975620 G A RBMS2 Missense_Mutation p.V246I 0.33 tolerated(0.46) benign(0.026) TCGA-CK-4951-01 12 57038967 57038967 C T ATP5B Missense_Mutation p.A100T 0.32 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-CK-4951-01 12 57111113 57111113 C T NACA Intron 0.35 TCGA-CK-4951-01 12 57422913 57422913 C T MYO1A Intron 0.28 TCGA-CK-4951-01 12 57430088 57430088 T A MYO1A Intron 0.19 TCGA-CK-4951-01 12 57431657 57431657 C A MYO1A Missense_Mutation p.D653Y 0.29 tolerated(0.09) benign(0.361) TCGA-CK-4951-01 12 57436924 57436924 C T MYO1A Missense_Mutation p.A344T 0.27 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 12 57442058 57442058 T A MYO1A Missense_Mutation p.E17V 0.38 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 12 57484978 57484978 G A NAB2 Missense_Mutation p.A52T 0.25 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 12 57574567 57574567 T A LRP1 Missense_Mutation p.V1835D 0.23 possibly_damaging(0.794) TCGA-CK-4951-01 12 57581090 57581090 G A LRP1 Nonsense_Mutation p.W2294* 0.25 TCGA-CK-4951-01 12 57584762 57584762 G A LRP1 Silent p.E2402E 0.25 TCGA-CK-4951-01 12 57587022 57587022 T A LRP1 Missense_Mutation p.F2540Y 0.33 benign(0.007) TCGA-CK-4951-01 12 57595624 57595624 G A LRP1 Silent p.A3510A 0.27 TCGA-CK-4951-01 12 57597296 57597296 G A LRP1 Missense_Mutation p.G3648D 0.25 benign(0) TCGA-CK-4951-01 12 57626232 57626232 C T SHMT2 Intron 0.18 TCGA-CK-4951-01 12 57627397 57627397 C T SHMT2 Missense_Mutation p.R359W 0.41 deleterious(0) possibly_damaging(0.567) TCGA-CK-4951-01 12 57662202 57662202 C T R3HDM2 Silent p.P624P 0.32 TCGA-CK-4951-01 12 57843559 57843559 C T INHBC Silent p.Y271Y 0.26 TCGA-CK-4951-01 12 57870724 57870724 C T ARHGAP9 Missense_Mutation p.R298H 0.41 tolerated(0.14) benign(0.007) TCGA-CK-4951-01 12 57884341 57884341 A T MARS Silent p.L228L 0.28 TCGA-CK-4951-01 12 57910030 57910030 A - MARS Frame_Shift_Del p.T824Rfs*8 0.20 TCGA-CK-4951-01 12 58001373 58001373 G A DTX3 Missense_Mutation p.V243I 0.35 tolerated(0.39) benign(0.004) TCGA-CK-4951-01 12 58006919 58006919 C T ARHGEF25 Missense_Mutation p.P141S 0.31 tolerated(0.31) benign(0.006) TCGA-CK-4951-01 12 58015116 58015116 C A SLC26A10 Missense_Mutation p.T154N 0.48 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 12 58021623 58021623 C T B4GALNT1 Missense_Mutation p.E388K 0.41 deleterious(0.01) probably_damaging(0.916) TCGA-CK-4951-01 12 58125707 58125707 G A AGAP2 Missense_Mutation p.P613L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 12 58139548 58139548 T C TSPAN31 Silent p.I28I 0.26 TCGA-CK-4951-01 12 58143085 58143085 A T CDK4 Silent p.P233P 0.14 TCGA-CK-4951-01 12 58163726 58163726 C T METTL1 Silent p.P96P 0.29 TCGA-CK-4951-01 12 58217363 58217363 C T CTDSP2 3'UTR 0.38 TCGA-CK-4951-01 12 59268294 59268294 A G LRIG3 Silent p.L919L 0.21 TCGA-CK-4951-01 12 60168630 60168630 T - SLC16A7 Frame_Shift_Del p.L186* 0.20 TCGA-CK-4951-01 12 6204686 6204686 C A VWF Missense_Mutation p.W199C 0.36 tolerated(0.15) benign(0.43) TCGA-CK-4951-01 12 62946905 62946905 C T MON2 Missense_Mutation p.A1054V 0.35 tolerated(0.07) possibly_damaging(0.837) TCGA-CK-4951-01 12 63195752 63195752 G A PPM1H Silent p.P200P 0.28 TCGA-CK-4951-01 12 6436567 6436567 C A PLEKHG6 Missense_Mutation p.S606R 0.30 deleterious_low_confidence(0.04) benign(0.01) TCGA-CK-4951-01 12 6493613 6493613 C T LTBR Missense_Mutation p.P30L 0.35 tolerated(0.3) benign(0.006) TCGA-CK-4951-01 12 6493807 6493807 C T LTBR Silent p.Y50Y 0.30 TCGA-CK-4951-01 12 6573810 6573810 A T VAMP1 Intron 0.32 TCGA-CK-4951-01 12 6579795 6579795 C T VAMP1 5'UTR 0.38 TCGA-CK-4951-01 12 6636942 6636942 G A NCAPD2 Splice_Site p.X970_splice 0.35 TCGA-CK-4951-01 12 6637375 6637375 C T NCAPD2 Silent p.F1060F 0.32 TCGA-CK-4951-01 12 6638161 6638161 C T NCAPD2 Silent p.D1176D 0.35 TCGA-CK-4951-01 12 6645729 6645729 C T GAPDH Silent p.I33I 0.40 TCGA-CK-4951-01 12 6646155 6646155 C G GAPDH Missense_Mutation p.F102L 0.09 deleterious_low_confidence(0.01) benign(0.412) TCGA-CK-4951-01 12 6669261 6669261 T A NOP2 Intron 0.31 TCGA-CK-4951-01 12 6669282 6669282 T A NOP2 Missense_Mutation p.I624F 0.25 deleterious(0) possibly_damaging(0.757) TCGA-CK-4951-01 12 66725334 66725334 G T HELB Missense_Mutation p.G1024V 0.41 tolerated(0.13) benign(0.05) TCGA-CK-4951-01 12 66859187 66859187 G A GRIP1 Missense_Mutation p.A247V 0.26 deleterious(0.01) benign(0.338) TCGA-CK-4951-01 12 6687572 6687572 T A CHD4 Intron 0.32 TCGA-CK-4951-01 12 6690953 6690953 G A CHD4 Missense_Mutation p.R1515C 0.37 deleterious(0.01) possibly_damaging(0.626) TCGA-CK-4951-01 12 6692464 6692464 G A CHD4 Silent p.H1320H 0.25 TCGA-CK-4951-01 12 6692478 6692478 T A CHD4 Nonsense_Mutation p.K1316* 0.23 TCGA-CK-4951-01 12 6697041 6697041 C T CHD4 Silent p.V1180V 0.42 TCGA-CK-4951-01 12 6729674 6729674 G A LPAR5 Silent p.F247F 0.48 TCGA-CK-4951-01 12 6729920 6729920 G A LPAR5 Silent p.C165C 0.43 TCGA-CK-4951-01 12 6730318 6730318 G A LPAR5 Silent p.L33L 0.41 TCGA-CK-4951-01 12 6777107 6777107 G A ZNF384 Nonsense_Mutation p.Q503* 0.24 TCGA-CK-4951-01 12 69103034 69103034 A - NUP107 Frame_Shift_Del p.T251Qfs*20 0.20 TCGA-CK-4951-01 12 6924043 6924043 G - CD4 Frame_Shift_Del p.K167Rfs*31 0.27 TCGA-CK-4951-01 12 6946159 6946159 G A LEPREL2 Missense_Mutation p.G489E 0.40 tolerated(1) benign(0.008) TCGA-CK-4951-01 12 69652516 69652516 G A CPSF6 Missense_Mutation p.G281R 0.34 deleterious(0.02) unknown(0) TCGA-CK-4951-01 12 69979275 69979275 C G CCT2 5'UTR 0.29 TCGA-CK-4951-01 12 70729275 70729275 G A CNOT2 Missense_Mutation p.R236Q 0.30 tolerated(0.06) benign(0.017) TCGA-CK-4951-01 12 70760606 70760606 C T KCNMB4 Missense_Mutation p.S31L 0.14 tolerated(0.12) benign(0.23) TCGA-CK-4951-01 12 71003046 71003046 A G PTPRB Missense_Mutation p.I261T 0.21 deleterious_low_confidence(0.01) benign(0.016) TCGA-CK-4951-01 12 72666961 72666961 C T TRHDE Missense_Mutation p.P135S 0.48 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 12 7360338 7360338 C T PEX5 Silent p.D365D 0.08 TCGA-CK-4951-01 12 74934274 74934274 C A ATXN7L3B 3'UTR 0.22 TCGA-CK-4951-01 12 7639176 7639176 A T CD163 Missense_Mutation p.S793T 0.12 tolerated(0.13) benign(0.192) TCGA-CK-4951-01 12 77421717 77421717 C T E2F7 Missense_Mutation p.E696K 0.28 deleterious(0.01) benign(0.424) TCGA-CK-4951-01 12 77436971 77436971 G A E2F7 Nonsense_Mutation p.R333* 0.32 TCGA-CK-4951-01 12 78513024 78513024 C T NAV3 Silent p.T1016T 0.32 TCGA-CK-4951-01 12 80190604 80190604 T G PPP1R12A Missense_Mutation p.T807P 0.28 tolerated(0.17) possibly_damaging(0.864) TCGA-CK-4951-01 12 81101782 81101782 G A MYF6 Missense_Mutation p.R95Q 0.32 deleterious(0) benign(0.355) TCGA-CK-4951-01 12 81648635 81648635 G A ACSS3 Splice_Site p.X666_splice 0.21 TCGA-CK-4951-01 12 81763121 81763121 A G PPFIA2 Intron 0.50 TCGA-CK-4951-01 12 85255624 85255624 T A SLC6A15 Silent p.G660G 0.30 TCGA-CK-4951-01 12 862740 862740 C T WNK1 Silent p.G3G 0.37 TCGA-CK-4951-01 12 863438 863438 A T WNK1 Missense_Mutation p.Y236F 0.32 deleterious(0) unknown(0) TCGA-CK-4951-01 12 88452671 88452671 G A CEP290 Missense_Mutation p.L2258F 0.34 probably_damaging(0.999) TCGA-CK-4951-01 12 88456508 88456508 T A CEP290 Missense_Mutation p.E2106D 0.19 benign(0.133) TCGA-CK-4951-01 12 88588827 88588827 G A TMTC3 Missense_Mutation p.A716T 0.27 tolerated(0.48) benign(0.038) TCGA-CK-4951-01 12 89917966 89917966 T G GALNT4 Missense_Mutation p.M121L 0.29 tolerated(0.69) benign(0.008) TCGA-CK-4951-01 12 91558382 91558382 G A DCN Silent p.H108H 0.25 TCGA-CK-4951-01 12 93236301 93236301 T A EEA1 Silent p.V285V 0.28 TCGA-CK-4951-01 12 93322895 93322895 G C EEA1 5'UTR 0.37 TCGA-CK-4951-01 12 95418991 95418991 A T NR2C1 Missense_Mutation p.F524L 0.10 tolerated(0.32) benign(0.011) TCGA-CK-4951-01 12 95451355 95451355 A C NR2C1 Missense_Mutation p.S253A 0.19 tolerated(0.54) benign(0.004) TCGA-CK-4951-01 12 95566425 95566425 A T FGD6 Missense_Mutation p.V846D 0.43 tolerated(0.64) benign(0.011) TCGA-CK-4951-01 12 95566430 95566430 A T FGD6 Missense_Mutation p.D844E 0.44 tolerated(0.32) benign(0.076) TCGA-CK-4951-01 12 95604856 95604856 C T FGD6 Silent p.G68G 0.37 TCGA-CK-4951-01 12 95660356 95660356 A G VEZT Missense_Mutation p.K220E 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 12 977235 977235 C T WNK1 Intron 0.37 TCGA-CK-4951-01 12 99007617 99007617 T C IKBIP Missense_Mutation p.R267G 0.36 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 12 99109224 99109224 A T APAF1 Missense_Mutation p.N993I 0.35 tolerated(0.07) benign(0) TCGA-CK-4951-01 12 9984946 9984946 A G KLRF1 Silent p.L40L 0.30 TCGA-CK-4951-01 13 101756724 101756724 A T NALCN Silent p.I937I 0.10 TCGA-CK-4951-01 13 101795532 101795532 C T NALCN Missense_Mutation p.D673N 0.26 deleterious(0.04) benign(0.05) TCGA-CK-4951-01 13 102568825 102568825 C T FGF14 Intron 0.35 TCGA-CK-4951-01 13 103445751 103445751 A G KDELC1 Silent p.H204H 0.28 TCGA-CK-4951-01 13 103508432 103508432 A G BIVM-ERCC5 Silent p.Q592Q 0.08 TCGA-CK-4951-01 13 103718589 103718589 G A SLC10A2 Missense_Mutation p.P4L 0.29 tolerated_low_confidence(0.31) benign(0.001) TCGA-CK-4951-01 13 108518345 108518345 G C FAM155A Silent p.A200A 0.19 TCGA-CK-4951-01 13 108881945 108881945 A G ABHD13 Missense_Mutation p.I127V 0.29 tolerated(0.24) benign(0.026) TCGA-CK-4951-01 13 110436522 110436522 G A IRS2 Missense_Mutation p.P627S 0.31 tolerated(0.45) benign(0.32) TCGA-CK-4951-01 13 111143618 111143618 G A COL4A2 Missense_Mutation p.D1129N 0.33 possibly_damaging(0.822) TCGA-CK-4951-01 13 111164298 111164298 C T COL4A2 Silent p.D1633D 0.19 TCGA-CK-4951-01 13 111176256 111176256 G A RAB20 Missense_Mutation p.A154V 0.25 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 13 111353877 111353877 G A CARS2 Nonsense_Mutation p.R101* 0.35 TCGA-CK-4951-01 13 111353880 111353880 T A CARS2 Missense_Mutation p.I100F 0.34 deleterious(0) probably_damaging(0.978) TCGA-CK-4951-01 13 113516869 113516869 A G ATP11A Missense_Mutation p.T991A 0.29 tolerated(0.46) benign(0.001) TCGA-CK-4951-01 13 113532531 113532531 A G ATP11A Missense_Mutation p.T1110A 0.10 tolerated(0.43) benign(0) TCGA-CK-4951-01 13 113740485 113740485 G T MCF2L Missense_Mutation p.Q765H 0.62 deleterious(0) possibly_damaging(0.616) TCGA-CK-4951-01 13 113740491 113740491 G A MCF2L Silent p.A767A 0.56 TCGA-CK-4951-01 13 113863013 113863013 C A PCID2 5'Flank 0.30 TCGA-CK-4951-01 13 113979966 113979966 C T GRTP1 Intron 0.41 TCGA-CK-4951-01 13 114309138 114309138 G A ATP4B Missense_Mutation p.R78W 0.42 deleterious(0.01) possibly_damaging(0.882) TCGA-CK-4951-01 13 115089476 115089476 A T CHAMP1 Silent p.I53I 0.31 TCGA-CK-4951-01 13 20233194 20233194 G A MPHOSPH8 Missense_Mutation p.E546K 0.34 deleterious(0.01) possibly_damaging(0.546) TCGA-CK-4951-01 13 20333464 20333464 T A PSPC1 Nonsense_Mutation p.K257* 0.13 TCGA-CK-4951-01 13 20716543 20716543 C T GJA3 Silent p.A295A 0.25 TCGA-CK-4951-01 13 21563321 21563321 C T LATS2 Missense_Mutation p.G200S 0.24 tolerated(0.52) benign(0.022) TCGA-CK-4951-01 13 21563396 21563396 C T LATS2 Missense_Mutation p.G175R 0.29 deleterious(0) possibly_damaging(0.839) TCGA-CK-4951-01 13 24243024 24243024 A G TNFRSF19 Missense_Mutation p.T345A 0.09 tolerated_low_confidence(0.91) benign(0.002) TCGA-CK-4951-01 13 24895132 24895132 A T C1QTNF9 Splice_Site p.X77_splice 0.38 TCGA-CK-4951-01 13 25265156 25265156 G A ATP12A Missense_Mutation p.R285H 0.36 tolerated(0.22) benign(0.003) TCGA-CK-4951-01 13 25274973 25274973 C A ATP12A Silent p.L604L 0.33 TCGA-CK-4951-01 13 25670528 25670528 C T PABPC3 Silent p.D64D 0.29 TCGA-CK-4951-01 13 26151262 26151262 T C ATP8A2 Missense_Mutation p.Y590H 0.25 deleterious(0.01) probably_damaging(0.952) TCGA-CK-4951-01 13 26594183 26594183 A G ATP8A2 3'UTR 0.21 TCGA-CK-4951-01 13 28368061 28368061 C T GSX1 Silent p.D257D 0.19 TCGA-CK-4951-01 13 28498579 28498579 G A PDX1 Missense_Mutation p.R198H 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 13 28631544 28631544 G A FLT3 Silent p.L142L 0.31 TCGA-CK-4951-01 13 28631545 28631545 G A FLT3 Silent p.Y141Y 0.30 TCGA-CK-4951-01 13 29286950 29286950 C A SLC46A3 Missense_Mutation p.L309F 0.32 tolerated(0.13) benign(0.007) TCGA-CK-4951-01 13 30054377 30054377 A G MTUS2 Missense_Mutation p.Q1102R 0.28 tolerated(0.07) benign(0.027) TCGA-CK-4951-01 13 30346278 30346278 C T UBL3 Missense_Mutation p.R65Q 0.28 deleterious(0.01) probably_damaging(0.972) TCGA-CK-4951-01 13 32332525 32332525 G A RXFP2 Silent p.A75A 0.31 TCGA-CK-4951-01 13 32735301 32735301 T C FRY Missense_Mutation p.I602T 0.22 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 13 32885787 32885787 G A ZAR1L Silent p.G92G 0.35 TCGA-CK-4951-01 13 34410532 34410532 G A RFC3 3'UTR 0.31 TCGA-CK-4951-01 13 35622819 35622819 T C NBEA Silent p.Y281Y 0.28 TCGA-CK-4951-01 13 35733604 35733604 T C NBEA Missense_Mutation p.V1099A 0.22 tolerated_low_confidence(0.4) benign(0.004) TCGA-CK-4951-01 13 36049786 36049786 C T MAB21L1 Missense_Mutation p.D164N 0.24 tolerated(0.12) benign(0.174) TCGA-CK-4951-01 13 37012870 37012870 G T CCNA1 Missense_Mutation p.E253D 0.28 deleterious(0) possibly_damaging(0.873) TCGA-CK-4951-01 13 37598478 37598478 T C SUPT20H Silent p.S477S 0.23 TCGA-CK-4951-01 13 38225571 38225571 A G TRPC4 Missense_Mutation p.F637S 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 13 39358894 39358894 G A FREM2 Missense_Mutation p.G1990R 0.33 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 13 40251609 40251609 A G COG6 Missense_Mutation p.K145E 0.30 deleterious(0.04) benign(0.111) TCGA-CK-4951-01 13 41635761 41635761 G A WBP4 5'UTR 0.33 TCGA-CK-4951-01 13 41636797 41636797 C T WBP4 Missense_Mutation p.S7L 0.40 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 13 41706722 41706722 C T KBTBD6 5'UTR 0.35 TCGA-CK-4951-01 13 41767700 41767700 C T KBTBD7 Missense_Mutation p.D232N 0.25 tolerated(0.7) benign(0.074) TCGA-CK-4951-01 13 42032547 42032547 G A RGCC Missense_Mutation p.R59H 0.47 deleterious(0.03) benign(0.035) TCGA-CK-4951-01 13 46287359 46287359 A T SPERT Missense_Mutation p.S67C 0.39 deleterious_low_confidence(0.02) probably_damaging(0.94) TCGA-CK-4951-01 13 47012164 47012164 C T PPP1R2P4 RNA 0.43 TCGA-CK-4951-01 13 48523652 48523652 C T SUCLA2 Silent p.L398L 0.31 TCGA-CK-4951-01 13 49086241 49086241 G C RCBTB2 Missense_Mutation p.R196G 0.23 deleterious(0.01) probably_damaging(0.912) TCGA-CK-4951-01 13 49281729 49281729 G A CYSLTR2 Missense_Mutation p.C259Y 0.18 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 13 49795007 49795007 C T MLNR Silent p.G178G 0.24 TCGA-CK-4951-01 13 50265434 50265434 C A EBPL Missense_Mutation p.A43S 0.34 tolerated(0.06) possibly_damaging(0.472) TCGA-CK-4951-01 13 50265448 50265448 G A EBPL Missense_Mutation p.A38V 0.30 tolerated(0.24) unknown(0) TCGA-CK-4951-01 13 52518382 52518382 C T ATP7B Missense_Mutation p.V1036I 0.29 tolerated(0.07) benign(0.128) TCGA-CK-4951-01 13 52593050 52593050 T - ALG11 Frame_Shift_Del p.Y18Ifs*35 0.23 TCGA-CK-4951-01 13 52604966 52604966 G A UTP14C Missense_Mutation p.A676T 0.27 tolerated(0.05) benign(0.103) TCGA-CK-4951-01 13 52676103 52676103 C G NEK5 Silent p.A286A 0.38 TCGA-CK-4951-01 13 53617288 53617288 A T OLFM4 Missense_Mutation p.N207Y 0.29 tolerated(0.07) probably_damaging(0.942) TCGA-CK-4951-01 13 58207814 58207814 C T PCDH17 Silent p.D378D 0.33 TCGA-CK-4951-01 13 58207976 58207976 C T PCDH17 Silent p.R432R 0.46 TCGA-CK-4951-01 13 67800839 67800839 T A PCDH9 Missense_Mutation p.Q578H 0.24 deleterious(0.01) possibly_damaging(0.88) TCGA-CK-4951-01 13 70514225 70514225 C T KLHL1 Missense_Mutation p.A321T 0.36 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 13 73345998 73345998 T A DIS3 Missense_Mutation p.R514W 0.24 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 13 73573101 73573101 G A PIBF1 Missense_Mutation p.D731N 0.08 tolerated(0.05) benign(0.011) TCGA-CK-4951-01 13 75887018 75887018 T C TBC1D4 Missense_Mutation p.K747E 0.24 deleterious(0.03) possibly_damaging(0.818) TCGA-CK-4951-01 13 76055496 76055496 G A TBC1D4 Silent p.L136L 0.38 TCGA-CK-4951-01 13 76055885 76055885 T A TBC1D4 Missense_Mutation p.I7F 0.33 deleterious_low_confidence(0) benign(0.063) TCGA-CK-4951-01 13 77459580 77459580 C G KCTD12 Missense_Mutation p.R235P 0.20 deleterious(0) probably_damaging(0.989) TCGA-CK-4951-01 13 78470770 78470770 G T EDNRB 3'UTR 0.15 TCGA-CK-4951-01 13 78492226 78492226 C T EDNRB Silent p.K251K 0.34 TCGA-CK-4951-01 13 79175555 79175555 A T POU4F1 Missense_Mutation p.Y419N 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-CK-4951-01 13 79175561 79175561 C T POU4F1 Missense_Mutation p.A417T 0.38 deleterious(0.03) unknown(0) TCGA-CK-4951-01 13 79175753 79175753 C T POU4F1 Missense_Mutation p.G353S 0.36 tolerated(0.13) unknown(0) TCGA-CK-4951-01 13 80910924 80910924 A G SPRY2 Missense_Mutation p.V306A 0.34 tolerated(0.66) benign(0.055) TCGA-CK-4951-01 13 93879622 93879622 G A GPC6 5'UTR 0.15 TCGA-CK-4951-01 13 99907370 99907370 C T GPR18 Missense_Mutation p.A253T 0.31 tolerated(0.36) benign(0.065) TCGA-CK-4951-01 14 100377779 100377779 G A EML1 Missense_Mutation p.A473T 0.24 tolerated(0.44) benign(0.209) TCGA-CK-4951-01 14 100615334 100615334 G A DEGS2 Missense_Mutation p.P266S 0.40 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 14 100615402 100615402 T C DEGS2 Missense_Mutation p.Y243C 0.29 deleterious(0) probably_damaging(0.976) TCGA-CK-4951-01 14 100774195 100774195 G A SLC25A29 5'Flank 0.32 TCGA-CK-4951-01 14 100795145 100795145 C T SLC25A47 Missense_Mutation p.S137L 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 14 101004786 101004786 G A BEGAIN Silent p.S434S 0.50 TCGA-CK-4951-01 14 102449744 102449744 T C DYNC1H1 Missense_Mutation p.F420S 0.29 probably_damaging(0.989) TCGA-CK-4951-01 14 102460595 102460595 T C DYNC1H1 Silent p.P1030P 0.30 TCGA-CK-4951-01 14 102461519 102461519 C T DYNC1H1 Missense_Mutation p.S1149F 0.40 possibly_damaging(0.655) TCGA-CK-4951-01 14 102471021 102471021 G A DYNC1H1 Splice_Site p.X1683_splice 0.25 TCGA-CK-4951-01 14 102472452 102472452 C T DYNC1H1 Silent p.R1887R 0.31 TCGA-CK-4951-01 14 102496568 102496568 G A DYNC1H1 Missense_Mutation p.V3278I 0.36 possibly_damaging(0.868) TCGA-CK-4951-01 14 102698915 102698915 C T MOK Missense_Mutation p.A275T 0.11 tolerated(0.84) benign(0.006) TCGA-CK-4951-01 14 102808062 102808062 A T ZNF839 Missense_Mutation p.D777V 0.32 tolerated(0.17) benign(0.268) TCGA-CK-4951-01 14 103180828 103180828 A - RCOR1 Frame_Shift_Del p.R311Gfs*28 0.27 TCGA-CK-4951-01 14 103416123 103416123 G A CDC42BPB Missense_Mutation p.A1143V 0.37 tolerated(1) possibly_damaging(0.842) TCGA-CK-4951-01 14 103568968 103568968 C T EXOC3L4 Missense_Mutation p.A303V 0.30 tolerated(0.06) benign(0.408) TCGA-CK-4951-01 14 103568973 103568973 G A EXOC3L4 Missense_Mutation p.G305S 0.30 deleterious(0.01) possibly_damaging(0.821) TCGA-CK-4951-01 14 103573795 103573795 T A EXOC3L4 Missense_Mutation p.L539Q 0.09 deleterious(0) probably_damaging(0.914) TCGA-CK-4951-01 14 103573799 103573799 G A EXOC3L4 Silent p.T540T 0.09 TCGA-CK-4951-01 14 103576402 103576402 C T EXOC3L4 Nonsense_Mutation p.R671* 0.25 TCGA-CK-4951-01 14 103596366 103596366 G T TNFAIP2 Missense_Mutation p.A335S 0.16 tolerated(0.2) possibly_damaging(0.531) TCGA-CK-4951-01 14 103932313 103932314 - GA MARK3 Frame_Shift_Ins p.V265Efs*3 0.27 TCGA-CK-4951-01 14 104026830 104026830 G A BAG5 Silent p.I265I 0.36 TCGA-CK-4951-01 14 104056663 104056663 G A APOPT1 3'UTR 0.24 TCGA-CK-4951-01 14 104195451 104195451 G A ZFYVE21 Missense_Mutation p.S153N 0.44 tolerated(0.06) benign(0.124) TCGA-CK-4951-01 14 104209095 104209095 C T PPP1R13B Missense_Mutation p.A406T 0.28 tolerated(0.24) benign(0.001) TCGA-CK-4951-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.32 TCGA-CK-4951-01 14 105174273 105174273 G A INF2 Missense_Mutation p.V557M 0.55 deleterious(0.01) unknown(0) TCGA-CK-4951-01 14 105177453 105177453 G A INF2 Missense_Mutation p.S783N 0.34 tolerated(0.15) unknown(0) TCGA-CK-4951-01 14 105201399 105201399 G A ADSSL1 Missense_Mutation p.E122K 0.50 tolerated(0.61) probably_damaging(0.982) TCGA-CK-4951-01 14 105206994 105206994 C T ADSSL1 Missense_Mutation p.T221I 0.36 deleterious(0.04) benign(0.028) TCGA-CK-4951-01 14 105239237 105239237 G A AKT1 Missense_Mutation p.L384F 0.16 deleterious(0.02) benign(0.294) TCGA-CK-4951-01 14 105270115 105270115 C T ZBTB42 3'UTR 0.14 TCGA-CK-4951-01 14 105350437 105350437 G A CEP170B Missense_Mutation p.A441T 0.50 tolerated(0.19) benign(0.008) TCGA-CK-4951-01 14 105353244 105353244 C T CEP170B Missense_Mutation p.P890S 0.32 deleterious(0) probably_damaging(0.918) TCGA-CK-4951-01 14 105407009 105407009 C T AHNAK2 Missense_Mutation p.A4927T 0.35 possibly_damaging(0.631) TCGA-CK-4951-01 14 105409328 105409328 C T AHNAK2 Missense_Mutation p.A4154T 0.37 probably_damaging(0.992) TCGA-CK-4951-01 14 105409917 105409917 G T AHNAK2 Silent p.A3957A 0.30 TCGA-CK-4951-01 14 105411461 105411461 C T AHNAK2 Missense_Mutation p.V3443I 0.31 benign(0.001) TCGA-CK-4951-01 14 105411491 105411491 C T AHNAK2 Missense_Mutation p.E3433K 0.28 possibly_damaging(0.533) TCGA-CK-4951-01 14 105417124 105417124 C T AHNAK2 Missense_Mutation p.G1555D 0.31 probably_damaging(0.935) TCGA-CK-4951-01 14 105418896 105418896 C T AHNAK2 Missense_Mutation p.M964I 0.24 benign(0.005) TCGA-CK-4951-01 14 105420881 105420881 G A AHNAK2 Nonsense_Mutation p.Q303* 0.24 TCGA-CK-4951-01 14 105422988 105422988 C T AHNAK2 Silent p.R84R 0.16 TCGA-CK-4951-01 14 105453056 105453056 G A C14orf79 Silent p.Q96Q 0.16 TCGA-CK-4951-01 14 105688172 105688172 G A BRF1 Silent p.H376H 0.35 TCGA-CK-4951-01 14 105688175 105688175 G C BRF1 Missense_Mutation p.S375R 0.35 tolerated(0.21) benign(0.004) TCGA-CK-4951-01 14 105695197 105695197 T A BRF1 Missense_Mutation p.I250F 0.25 deleterious(0) possibly_damaging(0.824) TCGA-CK-4951-01 14 105848315 105848315 C T PACS2 Missense_Mutation p.R445W 0.26 deleterious(0) probably_damaging(0.975) TCGA-CK-4951-01 14 105931123 105931123 G A MTA1 Missense_Mutation p.C486Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 14 105995617 105995617 G A TMEM121 Missense_Mutation p.R149H 0.33 tolerated(0.09) benign(0.037) TCGA-CK-4951-01 14 105996251 105996251 G A TMEM121 3'UTR 0.45 TCGA-CK-4951-01 14 106303461 106303461 A G IGHD 3'UTR 0.29 TCGA-CK-4951-01 14 106866503 106866503 C T IGHV3-38 Missense_Mutation p.R84K 0.17 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-CK-4951-01 14 20483213 20483213 A G OR4K14 Missense_Mutation p.V47A 0.19 deleterious(0.02) benign(0.003) TCGA-CK-4951-01 14 20757724 20757724 G A TTC5 3'UTR 0.60 TCGA-CK-4951-01 14 20979249 20979249 G A RNASE10 Missense_Mutation p.D207N 0.38 tolerated(0.11) benign(0.09) TCGA-CK-4951-01 14 21052505 21052505 G A RNASE11 Silent p.G43G 0.33 TCGA-CK-4951-01 14 21167603 21167603 C T RNASE4 Missense_Mutation p.P25S 0.47 deleterious(0.02) possibly_damaging(0.728) TCGA-CK-4951-01 14 21485801 21485807 GTTCCAG CTCCAA NDRG2 Frame_Shift_Del p.S355Ffs*24 0.33 TCGA-CK-4951-01 14 21560563 21560563 G C ZNF219 Missense_Mutation p.A298G 0.19 tolerated(0.58) probably_damaging(0.97) TCGA-CK-4951-01 14 21702321 21702321 G A HNRNPC Missense_Mutation p.P11L 0.22 deleterious(0) possibly_damaging(0.607) TCGA-CK-4951-01 14 21826111 21826111 C A SUPT16H Missense_Mutation p.S822I 0.36 tolerated(0.1) possibly_damaging(0.77) TCGA-CK-4951-01 14 21829067 21829067 A T SUPT16H Missense_Mutation p.L665Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 14 21884050 21884050 C T CHD8 Missense_Mutation p.R578H 0.32 deleterious(0) probably_damaging(0.984) TCGA-CK-4951-01 14 21961051 21961053 GCA - TOX4 In_Frame_Del p.A434del 0.15 TCGA-CK-4951-01 14 23240530 23240530 C T OXA1L Missense_Mutation p.R446W 0.31 deleterious(0) possibly_damaging(0.764) TCGA-CK-4951-01 14 23282479 23282479 C T SLC7A7 Silent p.V43V 0.25 TCGA-CK-4951-01 14 23282517 23282517 C T SLC7A7 Missense_Mutation p.V31M 0.29 tolerated(0.6) benign(0.021) TCGA-CK-4951-01 14 23315110 23315110 G A MMP14 Silent p.V537V 0.25 TCGA-CK-4951-01 14 23345469 23345469 C T LRP10 Missense_Mutation p.P438S 0.26 deleterious(0) probably_damaging(0.98) TCGA-CK-4951-01 14 23345906 23345906 C T LRP10 Missense_Mutation p.A478V 0.43 tolerated(0.17) possibly_damaging(0.743) TCGA-CK-4951-01 14 23495352 23495352 G T PSMB5 Silent p.V246V 0.30 TCGA-CK-4951-01 14 23511607 23511607 G A PSMB11 Missense_Mutation p.R58H 0.36 deleterious(0.02) benign(0.002) TCGA-CK-4951-01 14 23511609 23511609 C T PSMB11 Missense_Mutation p.H59Y 0.36 tolerated(0.06) benign(0.006) TCGA-CK-4951-01 14 23528394 23528394 C T ACIN1 Missense_Mutation p.R1330Q 0.19 unknown(0) TCGA-CK-4951-01 14 23635585 23635585 C T SLC7A8 Missense_Mutation p.D106N 0.40 tolerated(0.06) probably_damaging(1) TCGA-CK-4951-01 14 23776996 23776996 C G BCL2L2-PABPN1 Missense_Mutation p.A7G 0.29 tolerated_low_confidence(0.42) benign(0.2) TCGA-CK-4951-01 14 23776999 23776999 C T BCL2L2-PABPN1 Missense_Mutation p.P8L 0.31 tolerated_low_confidence(0.62) possibly_damaging(0.883) TCGA-CK-4951-01 14 23777105 23777105 C T BCL2L2-PABPN1 Silent p.H43H 0.17 TCGA-CK-4951-01 14 23899789 23899789 C T MYH7 Missense_Mutation p.E327K 0.31 deleterious(0.03) possibly_damaging(0.906) TCGA-CK-4951-01 14 23900979 23900979 G A MYH7 Silent p.S210S 0.23 TCGA-CK-4951-01 14 24038789 24038789 T C JPH4 3'UTR 0.35 TCGA-CK-4951-01 14 24534400 24534400 C T LRRC16B Missense_Mutation p.S1105F 0.47 deleterious(0.03) unknown(0) TCGA-CK-4951-01 14 24550528 24550528 C G NRL Missense_Mutation p.E211Q 0.52 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 14 24568803 24568803 T A PCK2 Missense_Mutation p.Y297N 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 14 24600705 24600705 G - RP11-468E2.6 Frame_Shift_Del p.G168Afs*15 0.28 TCGA-CK-4951-01 14 24601656 24601656 G A FITM1 Missense_Mutation p.R168H 0.29 deleterious(0) probably_damaging(0.928) TCGA-CK-4951-01 14 24618693 24618693 G A RNF31 Missense_Mutation p.C237Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 14 24635063 24635063 C T IRF9 Silent p.V333V 0.25 TCGA-CK-4951-01 14 24706742 24706742 G A GMPR2 Missense_Mutation p.C242Y 0.31 tolerated(0.19) probably_damaging(0.993) TCGA-CK-4951-01 14 24707730 24707730 G A GMPR2 Intron 0.34 TCGA-CK-4951-01 14 24711510 24711510 G A TINF2 Missense_Mutation p.A10V 0.38 tolerated(0.05) possibly_damaging(0.682) TCGA-CK-4951-01 14 24728337 24728337 G A TGM1 Missense_Mutation p.T368M 0.44 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 14 24773016 24773016 T C NOP9 Missense_Mutation p.Y455H 0.14 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 14 24779711 24779711 G A CIDEB 5'UTR 0.36 TCGA-CK-4951-01 14 24805465 24805465 G T RIPK3 Silent p.P491P 0.35 TCGA-CK-4951-01 14 24806342 24806342 G A RIPK3 Missense_Mutation p.P409S 0.27 tolerated(0.14) benign(0.272) TCGA-CK-4951-01 14 24836232 24836232 A G NFATC4 5'UTR 0.12 TCGA-CK-4951-01 14 24836264 24836264 A T NFATC4 Missense_Mutation p.I2L 0.13 unknown(0) TCGA-CK-4951-01 14 24845995 24845996 - G NFATC4 Frame_Shift_Ins p.A916Gfs*37 0.32 TCGA-CK-4951-01 14 24877384 24877384 C T NYNRIN Missense_Mutation p.R170C 0.21 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-CK-4951-01 14 25102177 25102177 G A GZMB Silent p.C49C 0.28 TCGA-CK-4951-01 14 31066648 31066648 T C G2E3 Missense_Mutation p.V184A 0.20 deleterious(0.01) benign(0.075) TCGA-CK-4951-01 14 31585559 31585559 A G HECTD1 Missense_Mutation p.L1834S 0.27 deleterious(0) possibly_damaging(0.505) TCGA-CK-4951-01 14 31597086 31597086 G A HECTD1 Missense_Mutation p.S1629L 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.879) TCGA-CK-4951-01 14 31642794 31642794 A G HECTD1 Silent p.N274N 0.18 TCGA-CK-4951-01 14 32561489 32561489 G T ARHGAP5 Missense_Mutation p.R538S 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 14 33292045 33292045 A T AKAP6 Missense_Mutation p.I1676L 0.31 tolerated(0.11) benign(0.002) TCGA-CK-4951-01 14 34985574 34985574 G A EAPP Missense_Mutation p.A267V 0.29 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 14 35331423 35331423 T - BAZ1A Frame_Shift_Del p.A74Qfs*12 0.33 TCGA-CK-4951-01 14 35470155 35470155 C T SRP54 Missense_Mutation p.L62F 0.09 tolerated(0.58) benign(0.003) TCGA-CK-4951-01 14 35761609 35761609 C G PSMA6 5'UTR 0.33 TCGA-CK-4951-01 14 36840958 36840958 C T DPPA3P2 RNA 0.30 TCGA-CK-4951-01 14 39508296 39508296 C T SEC23A Missense_Mutation p.R716H 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 14 39644406 39644406 C T PNN 5'Flank 0.50 TCGA-CK-4951-01 14 39644410 39644410 C T PNN 5'Flank 0.44 TCGA-CK-4951-01 14 39703369 39703370 AA - MIA2 Frame_Shift_Del p.K18Vfs*12 0.23 TCGA-CK-4951-01 14 45620671 45620671 A - FANCM Frame_Shift_Del p.K331Nfs*4 0.10 TCGA-CK-4951-01 14 50087980 50087980 G A MGAT2 5'UTR 0.33 TCGA-CK-4951-01 14 50100470 50100470 G C DNAAF2 Silent p.G466G 0.31 TCGA-CK-4951-01 14 51259439 51259439 G A NIN Silent p.D142D 0.11 TCGA-CK-4951-01 14 52496353 52496353 G A NID2 Silent p.D771D 0.10 TCGA-CK-4951-01 14 52741602 52741602 T - PTGDR Frame_Shift_Del p.H336Tfs*34 0.25 TCGA-CK-4951-01 14 55251137 55251137 G A SAMD4A Intron 0.35 TCGA-CK-4951-01 14 55462343 55462343 T C WDHD1 Silent p.L377L 0.28 TCGA-CK-4951-01 14 55511149 55511149 T G SOCS4 3'UTR 0.32 TCGA-CK-4951-01 14 55513554 55513554 T - SOCS4 3'UTR 0.33 TCGA-CK-4951-01 14 55514980 55514980 C T SOCS4 3'UTR 0.28 TCGA-CK-4951-01 14 55516101 55516101 T A SOCS4 3'UTR 0.26 TCGA-CK-4951-01 14 56137475 56137475 A - KTN1 Frame_Shift_Del p.K1101Rfs*18 0.27 TCGA-CK-4951-01 14 60212661 60212661 A T RTN1 Missense_Mutation p.F260L 0.26 deleterious(0.01) benign(0.164) TCGA-CK-4951-01 14 61747249 61747249 A T TMEM30B Missense_Mutation p.F206Y 0.40 tolerated(0.14) benign(0.34) TCGA-CK-4951-01 14 64894147 64894147 C T MTHFD1 Missense_Mutation p.A407V 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-CK-4951-01 14 64898311 64898311 C T MTHFD1 Missense_Mutation p.A458V 0.37 deleterious(0) probably_damaging(0.975) TCGA-CK-4951-01 14 65008691 65008691 G A HSPA2 Missense_Mutation p.G375D 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-CK-4951-01 14 65194516 65194516 G A PLEKHG3 Missense_Mutation p.R56Q 0.21 tolerated(0.2) benign(0.024) TCGA-CK-4951-01 14 65220363 65220363 T A SPTB Missense_Mutation p.E2165V 0.24 tolerated(0.12) possibly_damaging(0.889) TCGA-CK-4951-01 14 65240019 65240019 G A SPTB Silent p.T1699T 0.34 TCGA-CK-4951-01 14 65419255 65419255 G A RAB15 Silent p.D53D 0.34 TCGA-CK-4951-01 14 67854958 67854958 T A PLEK2 Missense_Mutation p.D306V 0.20 deleterious(0) probably_damaging(0.983) TCGA-CK-4951-01 14 67859529 67859529 G A PLEK2 Silent p.F173F 0.19 TCGA-CK-4951-01 14 68041029 68041029 T C PLEKHH1 Missense_Mutation p.V666A 0.30 tolerated(0.11) benign(0.077) TCGA-CK-4951-01 14 68159762 68159762 G T RDH11 Missense_Mutation p.L28M 0.32 tolerated(0.55) possibly_damaging(0.703) TCGA-CK-4951-01 14 69257007 69257007 C T ZFP36L1 Missense_Mutation p.R87Q 0.30 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 14 69522323 69522323 C T DCAF5 Nonsense_Mutation p.W360* 0.41 TCGA-CK-4951-01 14 70237780 70237780 A G SRSF5 Missense_Mutation p.N170S 0.30 tolerated(0.05) possibly_damaging(0.733) TCGA-CK-4951-01 14 70263811 70263811 C T SLC10A1 Missense_Mutation p.R21H 0.13 deleterious(0.02) possibly_damaging(0.902) TCGA-CK-4951-01 14 70713834 70713834 G A ADAM21P1 RNA 0.33 TCGA-CK-4951-01 14 70926047 70926047 A G ADAM21 Missense_Mutation p.T611A 0.28 deleterious(0.01) possibly_damaging(0.589) TCGA-CK-4951-01 14 73425449 73425449 C T DCAF4 Missense_Mutation p.S475F 0.35 tolerated(0.73) benign(0.002) TCGA-CK-4951-01 14 73444937 73444937 G A ZFYVE1 Silent p.C475C 0.21 TCGA-CK-4951-01 14 73721303 73721303 C T PAPLN Missense_Mutation p.A435V 0.52 deleterious(0.03) benign(0.078) TCGA-CK-4951-01 14 73958574 73958574 G A HEATR4 Intron 0.38 TCGA-CK-4951-01 14 73958794 73958794 G C HEATR4 Intron 0.30 TCGA-CK-4951-01 14 73959689 73959689 G A HEATR4 Intron 0.22 TCGA-CK-4951-01 14 73959811 73959811 T C HEATR4 Missense_Mutation p.R935G 0.12 tolerated(0.09) benign(0.004) TCGA-CK-4951-01 14 73985802 73985802 G A HEATR4 Missense_Mutation p.R379W 0.31 tolerated(0.07) benign(0.025) TCGA-CK-4951-01 14 74180119 74180119 G C PNMA1 Missense_Mutation p.A75G 0.38 deleterious(0.03) benign(0.236) TCGA-CK-4951-01 14 74206133 74206133 C G ELMSAN1 Silent p.R193R 0.50 TCGA-CK-4951-01 14 74350817 74350817 C T PTGR2 Silent p.S331S 0.23 TCGA-CK-4951-01 14 74411511 74411511 G A FAM161B Missense_Mutation p.S214L 0.30 tolerated(0.06) benign(0.048) TCGA-CK-4951-01 14 74416659 74416659 C T COQ6 5'Flank 0.20 TCGA-CK-4951-01 14 74417063 74417063 G A COQ6 Missense_Mutation p.G10R 0.33 tolerated_low_confidence(0.36) benign(0) TCGA-CK-4951-01 14 74706224 74706224 G A VSX2 5'UTR 0.27 TCGA-CK-4951-01 14 75230552 75230552 G A YLPM1 Silent p.Q120Q 0.23 TCGA-CK-4951-01 14 75265374 75265374 T C YLPM1 Missense_Mutation p.L1125P 0.18 benign(0) TCGA-CK-4951-01 14 75279443 75279443 C T YLPM1 Silent p.D1820D 0.38 TCGA-CK-4951-01 14 75361083 75361083 G A DLST Missense_Mutation p.M247I 0.31 tolerated(0.34) possibly_damaging(0.875) TCGA-CK-4951-01 14 75643166 75643166 G C TMED10 Missense_Mutation p.N39K 0.44 tolerated(0.06) benign(0.072) TCGA-CK-4951-01 14 75898935 75898935 C T JDP2 5'UTR 0.30 TCGA-CK-4951-01 14 76012936 76012936 G A BATF Silent p.T100T 0.33 TCGA-CK-4951-01 14 77275950 77275950 G A ANGEL1 Missense_Mutation p.A34V 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-CK-4951-01 14 77494194 77494194 T A IRF2BPL 5'UTR 0.35 TCGA-CK-4951-01 14 77605647 77605647 C T ZDHHC22 Silent p.V145V 0.26 TCGA-CK-4951-01 14 77794254 77794254 G A GSTZ1 Splice_Site p.X73_splice 0.47 TCGA-CK-4951-01 14 77844748 77844748 A G SAMD15 Silent p.L329L 0.26 TCGA-CK-4951-01 14 77873199 77873199 G A NOXRED1 Missense_Mutation p.H184Y 0.27 tolerated(0.38) benign(0.099) TCGA-CK-4951-01 14 79746585 79746585 C T NRXN3 Intron 0.40 TCGA-CK-4951-01 14 79746627 79746627 C T NRXN3 Intron 0.42 TCGA-CK-4951-01 14 79746633 79746633 C A NRXN3 Intron 0.38 TCGA-CK-4951-01 14 79746864 79746864 C T NRXN3 Intron 0.16 TCGA-CK-4951-01 14 81744676 81744676 G A STON2 Missense_Mutation p.P327S 0.34 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 14 81950619 81950619 C T SEL1L Missense_Mutation p.A666T 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 14 88477493 88477493 G A GPR65 Missense_Mutation p.S101N 0.31 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 14 89093197 89093197 A G EML5 Silent p.A1575A 0.27 TCGA-CK-4951-01 14 90867640 90867640 C T CALM1 Silent p.G24G 0.28 TCGA-CK-4951-01 14 91413793 91413793 C T RPS6KA5 Missense_Mutation p.E166K 0.23 deleterious(0) probably_damaging(0.969) TCGA-CK-4951-01 14 91739865 91739865 G A CCDC88C Missense_Mutation p.P1731S 0.47 tolerated(0.15) possibly_damaging(0.899) TCGA-CK-4951-01 14 91875037 91875037 G A CCDC88C Missense_Mutation p.T79I 0.24 deleterious(0) possibly_damaging(0.739) TCGA-CK-4951-01 14 92471798 92471798 T - TRIP11 Frame_Shift_Del p.N841Mfs*4 0.21 TCGA-CK-4951-01 14 93125666 93125666 G T RIN3 Silent p.V729V 0.34 TCGA-CK-4951-01 14 93299658 93299658 T C GOLGA5 Silent p.S637S 0.27 TCGA-CK-4951-01 14 93303751 93303751 T C GOLGA5 Missense_Mutation p.L691P 0.35 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 14 93650233 93650233 C T MOAP1 Missense_Mutation p.E119K 0.31 tolerated(0.07) benign(0.056) TCGA-CK-4951-01 14 93712451 93712451 G - BTBD7 Frame_Shift_Del p.P768Qfs*53 0.23 TCGA-CK-4951-01 14 94394556 94394556 G A FAM181A Silent p.V37V 0.46 TCGA-CK-4951-01 14 94417467 94417467 A G ASB2 Missense_Mutation p.V253A 0.35 tolerated(0.12) benign(0.012) TCGA-CK-4951-01 14 94526578 94526578 A G DDX24 Silent p.F593F 0.30 TCGA-CK-4951-01 14 95677108 95677108 C T CLMN Silent p.L239L 0.35 TCGA-CK-4951-01 14 95932274 95932274 C A SYNE3 Missense_Mutation p.K207N 0.26 deleterious(0.01) possibly_damaging(0.544) TCGA-CK-4951-01 14 96706944 96706944 G A BDKRB2 Silent p.E93E 0.45 TCGA-CK-4951-01 14 96954783 96954784 - T AK7 3'UTR 0.29 TCGA-CK-4951-01 15 100516277 100516277 C T ADAMTS17 Missense_Mutation p.A1034T 0.29 tolerated(0.1) benign(0.033) TCGA-CK-4951-01 15 100672236 100672236 C T ADAMTS17 Missense_Mutation p.R566K 0.26 deleterious(0.02) possibly_damaging(0.662) TCGA-CK-4951-01 15 100871108 100871108 C A ADAMTS17 Missense_Mutation p.C201F 0.29 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 15 101114417 101114417 C T LINS Missense_Mutation p.D221N 0.23 deleterious(0.04) benign(0.113) TCGA-CK-4951-01 15 101425544 101425544 G A ALDH1A3 Missense_Mutation p.E58K 0.33 tolerated(0.21) benign(0.002) TCGA-CK-4951-01 15 101523781 101523781 C T LRRK1 Missense_Mutation p.R104C 0.37 tolerated(0.15) benign(0.006) TCGA-CK-4951-01 15 101567524 101567524 G A LRRK1 Missense_Mutation p.V822I 0.32 tolerated(0.11) benign(0.028) TCGA-CK-4951-01 15 101718039 101718039 A T CHSY1 Missense_Mutation p.Y655N 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 15 101825171 101825171 C T SNRPA1 Splice_Site p.X237_splice 0.33 TCGA-CK-4951-01 15 20643954 20643954 T C HERC2P3 RNA 0.15 TCGA-CK-4951-01 15 20644229 20644229 G A HERC2P3 RNA 0.17 TCGA-CK-4951-01 15 20876496 20876496 A G NBEAP1 RNA 0.12 TCGA-CK-4951-01 15 22742753 22742753 C T GOLGA6L1 Missense_Mutation p.R380W 0.13 unknown(0) TCGA-CK-4951-01 15 22956167 22956167 A G CYFIP1 Intron 0.10 TCGA-CK-4951-01 15 26026283 26026283 C T ATP10A Silent p.A179A 0.38 TCGA-CK-4951-01 15 28231761 28231761 G A OCA2 Missense_Mutation p.T404M 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 15 29398883 29398883 C A APBA2 Missense_Mutation p.P593H 0.28 deleterious(0) probably_damaging(0.967) TCGA-CK-4951-01 15 31253131 31253131 G A MTMR10 Silent p.S237S 0.31 TCGA-CK-4951-01 15 31776679 31776679 G A OTUD7A Silent p.G533G 0.31 TCGA-CK-4951-01 15 32925306 32925306 G A ARHGAP11A Missense_Mutation p.C411Y 0.19 tolerated(1) benign(0.005) TCGA-CK-4951-01 15 33023059 33023059 G A GREM1 Silent p.R56R 0.31 TCGA-CK-4951-01 15 33026383 33026383 C T GREM1 3'UTR 0.30 TCGA-CK-4951-01 15 33069086 33069086 T C FMN1 Missense_Mutation p.T1166A 0.11 tolerated(0.06) probably_damaging(0.998) TCGA-CK-4951-01 15 33954467 33954467 C T RYR3 Missense_Mutation p.A1579V 0.35 probably_damaging(0.94) TCGA-CK-4951-01 15 34434567 34434567 T C KATNBL1 Silent p.V296V 0.32 TCGA-CK-4951-01 15 34659252 34659252 C T LPCAT4 Missense_Mutation p.G17E 0.28 tolerated_low_confidence(0.58) benign(0.001) TCGA-CK-4951-01 15 37184442 37184442 T G MEIS2 Missense_Mutation p.S456R 0.26 tolerated_low_confidence(0.07) benign(0.001) TCGA-CK-4951-01 15 38643400 38643400 A G SPRED1 Silent p.S290S 0.21 TCGA-CK-4951-01 15 40398031 40398031 C T BMF Missense_Mutation p.C86Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 15 40590569 40590569 G A PLCB2 Missense_Mutation p.S337L 0.24 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 15 40631815 40631815 G A C15orf52 Silent p.I87I 0.20 TCGA-CK-4951-01 15 40675057 40675057 G A KNSTRN Silent p.P7P 0.43 TCGA-CK-4951-01 15 40685500 40685500 A T KNSTRN Intron 0.26 TCGA-CK-4951-01 15 40754253 40754253 C T BAHD1 Silent p.T525T 0.34 TCGA-CK-4951-01 15 40754391 40754391 G C BAHD1 Missense_Mutation p.K571N 0.38 deleterious(0.05) probably_damaging(0.996) TCGA-CK-4951-01 15 40756089 40756089 C T BAHD1 Silent p.S615S 0.25 TCGA-CK-4951-01 15 40866248 40866248 G A RPUSD2 Missense_Mutation p.D476N 0.38 tolerated(0.22) benign(0.005) TCGA-CK-4951-01 15 40914285 40914285 C T CASC5 Missense_Mutation p.S634F 0.23 tolerated(0.69) benign(0.145) TCGA-CK-4951-01 15 41029902 41029902 T C RMDN3 Missense_Mutation p.E383G 0.28 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 15 41060228 41060228 G A DNAJC17 Silent p.S275S 0.33 TCGA-CK-4951-01 15 41148234 41148234 G A SPINT1 Missense_Mutation p.C437Y 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 15 41165194 41165194 G A RHOV 3'UTR 0.25 TCGA-CK-4951-01 15 41193044 41193044 G A VPS18 Silent p.P676P 0.14 TCGA-CK-4951-01 15 41768016 41768016 A G RTF1 Missense_Mutation p.E494G 0.09 tolerated(0.15) benign(0.016) TCGA-CK-4951-01 15 41772959 41772959 T A RTF1 3'UTR 0.26 TCGA-CK-4951-01 15 41797720 41797720 C T LTK Missense_Mutation p.R569H 0.31 deleterious_low_confidence(0) benign(0.278) TCGA-CK-4951-01 15 41827781 41827781 G A RPAP1 Missense_Mutation p.A157V 0.45 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 15 41829278 41829278 G A RPAP1 Missense_Mutation p.H16Y 0.12 deleterious(0) benign(0.034) TCGA-CK-4951-01 15 41870182 41870182 C T TYRO3 Missense_Mutation p.S794F 0.09 deleterious(0.03) probably_damaging(0.98) TCGA-CK-4951-01 15 42113806 42113806 G A MAPKBP1 Missense_Mutation p.A921T 0.43 tolerated(0.56) benign(0.001) TCGA-CK-4951-01 15 42137474 42137474 C T PLA2G4B Missense_Mutation p.A669V 0.27 tolerated(0.24) benign(0.147) TCGA-CK-4951-01 15 42139675 42139675 G A PLA2G4B Silent p.L927L 0.31 TCGA-CK-4951-01 15 42156162 42156162 G A SPTBN5 Missense_Mutation p.R2327W 0.32 possibly_damaging(0.899) TCGA-CK-4951-01 15 42446517 42446517 C T PLA2G4F Intron 0.34 TCGA-CK-4951-01 15 42457291 42457291 C T VPS39 Nonsense_Mutation p.W600* 0.27 TCGA-CK-4951-01 15 42457296 42457296 C T VPS39 Missense_Mutation p.V599I 0.30 tolerated(0.3) benign(0.005) TCGA-CK-4951-01 15 42470730 42470730 A G VPS39 Missense_Mutation p.Y253H 0.28 tolerated(0.49) benign(0.06) TCGA-CK-4951-01 15 42693918 42693918 C T CAPN3 Silent p.C478C 0.24 TCGA-CK-4951-01 15 42714796 42714796 T C ZNF106 Missense_Mutation p.Y1736C 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 15 42727684 42727684 A G ZNF106 Silent p.H1570H 0.31 TCGA-CK-4951-01 15 43021257 43021257 G A CDAN1 Missense_Mutation p.A870V 0.15 tolerated(0.06) possibly_damaging(0.877) TCGA-CK-4951-01 15 43022829 43022829 C T CDAN1 Missense_Mutation p.R714Q 0.25 tolerated(0.19) probably_damaging(0.975) TCGA-CK-4951-01 15 43044181 43044181 A C TTBK2 Missense_Mutation p.V1088G 0.45 deleterious(0) possibly_damaging(0.834) TCGA-CK-4951-01 15 43044865 43044865 T C TTBK2 Missense_Mutation p.D860G 0.32 tolerated_low_confidence(0.08) benign(0.118) TCGA-CK-4951-01 15 43461852 43461852 A G TMEM62 Missense_Mutation p.Y453C 0.30 deleterious(0.01) benign(0.024) TCGA-CK-4951-01 15 43500836 43500836 A G EPB42 Missense_Mutation p.W354R 0.42 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 15 43653488 43653488 C T ZSCAN29 Missense_Mutation p.R781Q 0.29 tolerated(0.69) probably_damaging(0.999) TCGA-CK-4951-01 15 44091547 44091547 T A SERINC4 Silent p.S80S 0.43 TCGA-CK-4951-01 15 44158325 44158325 G A WDR76 Splice_Site p.X539_splice 0.41 TCGA-CK-4951-01 15 44865643 44865643 G A SPG11 Intron 0.29 TCGA-CK-4951-01 15 44876663 44876663 T A SPG11 Nonsense_Mutation p.K1739* 0.15 TCGA-CK-4951-01 15 44892813 44892813 G A SPG11 Missense_Mutation p.P1180S 0.44 deleterious(0.02) probably_damaging(0.932) TCGA-CK-4951-01 15 45047313 45047313 G A TRIM69 Silent p.K74K 0.26 TCGA-CK-4951-01 15 45365596 45365596 G A SORD Silent p.K314K 0.19 TCGA-CK-4951-01 15 45396446 45396446 T G DUOX2 Missense_Mutation p.K818Q 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-CK-4951-01 15 45396470 45396470 C T DUOX2 Missense_Mutation p.E810K 0.41 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 15 45409355 45409355 C T DUOXA2 Silent p.G207G 0.23 TCGA-CK-4951-01 15 45431685 45431685 G A DUOX1 Missense_Mutation p.R426Q 0.29 tolerated(0.1) possibly_damaging(0.668) TCGA-CK-4951-01 15 45431766 45431766 T A DUOX1 Missense_Mutation p.I453N 0.32 deleterious(0) probably_damaging(0.949) TCGA-CK-4951-01 15 45454112 45454112 C A DUOX1 Missense_Mutation p.R1345S 0.33 deleterious(0.01) benign(0.434) TCGA-CK-4951-01 15 49064727 49064727 T C CEP152 Missense_Mutation p.D580G 0.22 deleterious(0.05) benign(0.009) TCGA-CK-4951-01 15 49426244 49426244 A - COPS2 Frame_Shift_Del p.F266Lfs*19 0.18 TCGA-CK-4951-01 15 49620287 49620287 A T GALK2 Missense_Mutation p.L436F 0.24 tolerated(0.56) benign(0.001) TCGA-CK-4951-01 15 50226261 50226261 C A ATP8B4 Missense_Mutation p.R469M 0.22 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 15 50897128 50897128 G A TRPM7 Missense_Mutation p.R975C 0.34 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 15 52404689 52404689 C T BCL2L10 Missense_Mutation p.A79T 0.27 tolerated(0.36) benign(0.008) TCGA-CK-4951-01 15 52472015 52472015 C A GNB5 Missense_Mutation p.S63I 0.41 tolerated(0.19) benign(0.002) TCGA-CK-4951-01 15 52668730 52668730 T A MYO5A Missense_Mutation p.K745M 0.36 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 15 53049925 53049925 G A ONECUT1 Missense_Mutation p.R409C 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 15 55972323 55972323 A G PRTG Missense_Mutation p.V301A 0.33 deleterious(0.01) possibly_damaging(0.73) TCGA-CK-4951-01 15 57544656 57544656 A G TCF12 Missense_Mutation p.Q409R 0.25 tolerated(0.23) benign(0.386) TCGA-CK-4951-01 15 58838157 58838157 C T LIPC Missense_Mutation p.A264V 0.30 deleterious(0.03) benign(0.367) TCGA-CK-4951-01 15 58919924 58919924 C T ADAM10 Silent p.E445E 0.23 TCGA-CK-4951-01 15 59063743 59063743 G A FAM63B Missense_Mutation p.G50D 0.39 deleterious_low_confidence(0.02) benign(0.122) TCGA-CK-4951-01 15 59377937 59377937 G A RNF111 Missense_Mutation p.A844T 0.23 tolerated(0.22) benign(0.164) TCGA-CK-4951-01 15 59429435 59429435 T C MYO1E 3'UTR 0.36 TCGA-CK-4951-01 15 59510239 59510239 T C MYO1E Missense_Mutation p.K320E 0.10 tolerated(0.44) benign(0.174) TCGA-CK-4951-01 15 62253982 62253982 A G VPS13C Silent p.R1238R 0.35 TCGA-CK-4951-01 15 63340901 63340901 G A TPM1 Intron 0.19 TCGA-CK-4951-01 15 63354448 63354448 T A TPM1 Missense_Mutation p.I225N 0.18 deleterious(0) probably_damaging(0.978) TCGA-CK-4951-01 15 63419688 63419688 A - LACTB Frame_Shift_Del p.E253Kfs*42 0.18 TCGA-CK-4951-01 15 64452378 64452378 T C PPIB Missense_Mutation p.N90D 0.32 tolerated(0.06) benign(0) TCGA-CK-4951-01 15 64701816 64701816 C T TRIP4 Nonsense_Mutation p.R278* 0.18 TCGA-CK-4951-01 15 65394834 65394834 C T UBAP1L Silent p.E103E 0.17 TCGA-CK-4951-01 15 65491136 65491136 G A CILP Silent p.V496V 0.38 TCGA-CK-4951-01 15 65499206 65499206 G A CILP Missense_Mutation p.P113L 0.30 tolerated(0.51) benign(0.014) TCGA-CK-4951-01 15 65822837 65822837 C T PTPLAD1 5'UTR 0.36 TCGA-CK-4951-01 15 66210412 66210412 C G MEGF11 Missense_Mutation p.G660R 0.31 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 15 66829508 66829508 T A ZWILCH Missense_Mutation p.I494N 0.17 tolerated(0.1) benign(0.104) TCGA-CK-4951-01 15 66829514 66829514 T A ZWILCH Missense_Mutation p.I496K 0.17 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 15 66829518 66829518 G A ZWILCH Silent p.K497K 0.17 TCGA-CK-4951-01 15 68486345 68486347 CTC - CALML4 3'UTR 0.36 TCGA-CK-4951-01 15 69079872 69079872 A G ANP32A Silent p.L69L 0.28 TCGA-CK-4951-01 15 71146300 71146300 G A LARP6 Missense_Mutation p.A43V 0.12 tolerated_low_confidence(0.24) benign(0) TCGA-CK-4951-01 15 71535243 71535243 C A THSD4 Silent p.A240A 0.31 TCGA-CK-4951-01 15 72105840 72105840 G A CTD-2524L6.3 5'Flank 0.41 TCGA-CK-4951-01 15 72118862 72118862 C T MYO9A 3'UTR 0.36 TCGA-CK-4951-01 15 72180394 72180394 C G MYO9A Missense_Mutation p.E1736Q 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 15 72260364 72260364 A G MYO9A Silent p.I649I 0.37 TCGA-CK-4951-01 15 72461302 72461302 A G GRAMD2 Missense_Mutation p.I57T 0.26 deleterious(0.01) benign(0.174) TCGA-CK-4951-01 15 72494812 72494812 G A PKM Intron 0.32 TCGA-CK-4951-01 15 72511319 72511319 G A PKM Silent p.I40I 0.29 TCGA-CK-4951-01 15 72668399 72668399 C T HEXA 5'UTR 0.33 TCGA-CK-4951-01 15 73616124 73616124 C T HCN4 Silent p.T770T 0.29 TCGA-CK-4951-01 15 73660580 73660580 C T HCN4 Missense_Mutation p.R11Q 0.30 deleterious_low_confidence(0) unknown(0) TCGA-CK-4951-01 15 73994829 73994829 G A CD276 Missense_Mutation p.A105T 0.33 deleterious(0.01) benign(0.375) TCGA-CK-4951-01 15 74428758 74428758 C T ISLR2 3'UTR 0.44 TCGA-CK-4951-01 15 74467468 74467468 C T ISLR Missense_Mutation p.A90V 0.40 deleterious(0) possibly_damaging(0.735) TCGA-CK-4951-01 15 74836562 74836562 C T ARID3B Silent p.D95D 0.28 TCGA-CK-4951-01 15 75094094 75094094 G A CSK Missense_Mutation p.A316T 0.31 deleterious(0) probably_damaging(0.978) TCGA-CK-4951-01 15 75122513 75122513 G A CPLX3 Missense_Mutation p.V99M 0.27 tolerated(0.09) benign(0.127) TCGA-CK-4951-01 15 75130844 75130844 C T ULK3 Silent p.E368E 0.36 TCGA-CK-4951-01 15 75248538 75248538 A T RPP25 Silent p.L129L 0.16 TCGA-CK-4951-01 15 75676740 75676740 C T SIN3A Silent p.V1020V 0.29 TCGA-CK-4951-01 15 75980767 75980767 G A CSPG4 Missense_Mutation p.P880L 0.31 tolerated(0.06) benign(0.197) TCGA-CK-4951-01 15 76136142 76136142 C T UBE2Q2 Silent p.S45S 0.38 TCGA-CK-4951-01 15 76225414 76225414 G A FBXO22 Missense_Mutation p.A395T 0.26 tolerated(1) benign(0.004) TCGA-CK-4951-01 15 77057342 77057342 C T SCAPER Missense_Mutation p.R562H 0.18 tolerated(0.11) probably_damaging(1) TCGA-CK-4951-01 15 77092661 77092661 C T SCAPER Missense_Mutation p.R180H 0.35 deleterious(0) possibly_damaging(0.725) TCGA-CK-4951-01 15 78346470 78346470 T A TBC1D2B Missense_Mutation p.E140D 0.26 deleterious(0.05) probably_damaging(0.996) TCGA-CK-4951-01 15 78346476 78346476 T G TBC1D2B Missense_Mutation p.R138S 0.25 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 15 78390805 78390805 C T SH2D7 Missense_Mutation p.T171M 0.31 tolerated(0.33) benign(0.002) TCGA-CK-4951-01 15 78454705 78454705 A G IDH3A Missense_Mutation p.I203V 0.19 tolerated(0.05) benign(0.261) TCGA-CK-4951-01 15 79056328 79056328 A T ADAMTS7 Silent p.P1511P 0.28 TCGA-CK-4951-01 15 79586040 79586040 C T ANKRD34C Silent p.L138L 0.31 TCGA-CK-4951-01 15 79587234 79587234 G T ANKRD34C Nonstop_Mutation p.*536Yext*3 0.20 TCGA-CK-4951-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.27 TCGA-CK-4951-01 15 80762707 80762707 T C ARNT2 Missense_Mutation p.S115P 0.27 deleterious(0) possibly_damaging(0.637) TCGA-CK-4951-01 15 81046595 81046595 C T ABHD17C Missense_Mutation p.P292S 0.36 tolerated(0.06) possibly_damaging(0.813) TCGA-CK-4951-01 15 81296116 81296116 T - MESDC1 3'UTR 0.09 TCGA-CK-4951-01 15 81598276 81598276 G T IL16 Missense_Mutation p.A1150S 0.32 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 15 82335782 82335782 C G MEX3B Missense_Mutation p.G477R 0.26 tolerated(0.24) benign(0.001) TCGA-CK-4951-01 15 83434735 83434735 C T FSD2 Silent p.P534P 0.50 TCGA-CK-4951-01 15 85383405 85383405 G A ALPK3 Missense_Mutation p.A501T 0.24 tolerated(0.4) benign(0.036) TCGA-CK-4951-01 15 85406058 85406058 C T ALPK3 Missense_Mutation p.T1643M 0.22 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 15 85488472 85488472 T A SLC28A1 3'UTR 0.35 TCGA-CK-4951-01 15 85634360 85634360 A - PDE8A Frame_Shift_Del p.K269Rfs*8 0.16 TCGA-CK-4951-01 15 86265262 86265262 G A AKAP13 Missense_Mutation p.G2102D 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 15 86807964 86807964 C T AGBL1 Missense_Mutation p.T475I 0.32 deleterious(0.01) possibly_damaging(0.86) TCGA-CK-4951-01 15 88472520 88472520 C T NTRK3 Missense_Mutation p.D679N 0.40 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 15 89860052 89860052 G A POLG Missense_Mutation p.A1217V 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 15 89867445 89867445 G A POLG Silent p.L655L 0.23 TCGA-CK-4951-01 15 89867456 89867456 G A POLG Missense_Mutation p.A651V 0.24 tolerated(0.37) benign(0.057) TCGA-CK-4951-01 15 90171743 90171743 G A KIF7 Silent p.G1313G 0.32 TCGA-CK-4951-01 15 90171759 90171759 G A KIF7 Missense_Mutation p.P1308L 0.30 deleterious(0.04) benign(0.046) TCGA-CK-4951-01 15 90214738 90214738 G A PLIN1 Missense_Mutation p.P103L 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 15 90265283 90265283 T A WDR93 Intron 0.30 TCGA-CK-4951-01 15 90768362 90768362 C T SEMA4B Missense_Mutation p.R453C 0.45 deleterious(0.01) probably_damaging(0.927) TCGA-CK-4951-01 15 90785150 90785150 G A GDPGP1 Missense_Mutation p.G337E 0.19 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 15 90814520 90814520 T - NGRN Frame_Shift_Del p.L127Yfs*8 0.28 TCGA-CK-4951-01 15 91136905 91136905 G A CRTC3 Missense_Mutation p.R90H 0.46 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 15 91185475 91185475 G A CRTC3 3'UTR 0.30 TCGA-CK-4951-01 15 91424592 91424592 C T FURIN Silent p.L623L 0.23 TCGA-CK-4951-01 15 91435943 91435943 T G FES Missense_Mutation p.F572V 0.22 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 15 91454727 91454727 C T MAN2A2 Nonsense_Mutation p.Q686* 0.45 TCGA-CK-4951-01 15 91463030 91463030 C T MAN2A2 3'UTR 0.29 TCGA-CK-4951-01 15 91496492 91496492 C T UNC45A Silent p.A843A 0.27 TCGA-CK-4951-01 15 92988010 92988010 C A ST8SIA2 Missense_Mutation p.H231Q 0.42 benign(0.007) TCGA-CK-4951-01 15 93588907 93588907 T G RGMA Missense_Mutation p.E233A 0.38 deleterious(0.04) possibly_damaging(0.793) TCGA-CK-4951-01 16 108435 108435 G A RHBDF1 Silent p.V824V 0.26 TCGA-CK-4951-01 16 11000801 11000801 C T CIITA Silent p.F484F 0.24 TCGA-CK-4951-01 16 11001144 11001144 C T CIITA Missense_Mutation p.R599W 0.32 deleterious(0) benign(0.393) TCGA-CK-4951-01 16 11073218 11073218 G A CLEC16A Silent p.V312V 0.30 TCGA-CK-4951-01 16 11348869 11348869 G A SOCS1 Missense_Mutation p.A156V 0.28 tolerated(0.25) benign(0.051) TCGA-CK-4951-01 16 11770768 11770768 C T SNN 3'UTR 0.29 TCGA-CK-4951-01 16 11785221 11785221 C T TXNDC11 Missense_Mutation p.A609T 0.21 tolerated(0.12) possibly_damaging(0.828) TCGA-CK-4951-01 16 12223548 12223548 G A SNX29 Missense_Mutation p.D510N 0.30 tolerated(0.09) possibly_damaging(0.834) TCGA-CK-4951-01 16 1258038 1258038 G A CACNA1H Silent p.V1060V 0.47 TCGA-CK-4951-01 16 1262035 1262035 C T CACNA1H Silent p.G1552G 0.36 TCGA-CK-4951-01 16 1269113 1269113 C T CACNA1H Missense_Mutation p.R2011W 0.39 deleterious(0) benign(0.003) TCGA-CK-4951-01 16 12758614 12758614 A - CPPED1 3'UTR 0.29 TCGA-CK-4951-01 16 1278680 1278680 C T TPSB2 Nonsense_Mutation p.W265* 0.26 TCGA-CK-4951-01 16 135639 135639 C T MPG Missense_Mutation p.P254S 0.30 tolerated(0.85) benign(0.003) TCGA-CK-4951-01 16 14028124 14028124 C T ERCC4 Missense_Mutation p.A393V 0.29 tolerated(0.27) benign(0.027) TCGA-CK-4951-01 16 143249 143249 G A NPRL3 Silent p.V333V 0.41 TCGA-CK-4951-01 16 14339413 14339413 G A MKL2 Missense_Mutation p.G370R 0.27 deleterious(0.05) benign(0.211) TCGA-CK-4951-01 16 1451643 1451643 G A UNKL Missense_Mutation p.P175L 0.38 tolerated(0.08) benign(0.053) TCGA-CK-4951-01 16 1451645 1451645 G A UNKL Silent p.V174V 0.38 TCGA-CK-4951-01 16 14530436 14530436 C - PARN 3'UTR 0.50 TCGA-CK-4951-01 16 15023155 15023155 T A RP11-958N24.1 RNA 0.28 TCGA-CK-4951-01 16 1506192 1506192 G A CLCN7 Missense_Mutation p.R280C 0.43 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 1545468 1545468 C T TELO2 Missense_Mutation p.R153W 0.30 tolerated(0.17) benign(0.016) TCGA-CK-4951-01 16 1550683 1550683 C T TELO2 Missense_Mutation p.P422S 0.43 tolerated(0.11) benign(0.334) TCGA-CK-4951-01 16 1550684 1550684 C T TELO2 Missense_Mutation p.P422L 0.43 deleterious(0.01) possibly_damaging(0.749) TCGA-CK-4951-01 16 1550689 1550689 C T TELO2 Silent p.L424L 0.43 TCGA-CK-4951-01 16 1551436 1551436 C G TELO2 Missense_Mutation p.L433V 0.39 tolerated(0.57) benign(0.044) TCGA-CK-4951-01 16 1551727 1551727 C T TELO2 Silent p.G475G 0.42 TCGA-CK-4951-01 16 15528518 15528519 - A C16orf45 Frame_Shift_Ins p.Q5Afs*50 0.11 TCGA-CK-4951-01 16 15695991 15695991 G A KIAA0430 Missense_Mutation p.R1495W 0.25 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 16 15727471 15727471 T A KIAA0430 Intron 0.42 TCGA-CK-4951-01 16 1584191 1584191 C T TMEM204 5'UTR 0.26 TCGA-CK-4951-01 16 1584221 1584221 C T TMEM204 5'UTR 0.34 TCGA-CK-4951-01 16 1584254 1584254 A T TMEM204 5'UTR 0.24 TCGA-CK-4951-01 16 16272732 16272732 G - ABCC6 Frame_Shift_Del p.L780Wfs*31 0.28 TCGA-CK-4951-01 16 16297411 16297411 G A ABCC6 Missense_Mutation p.T285I 0.24 deleterious(0.05) benign(0.272) TCGA-CK-4951-01 16 1812705 1812707 AGA - MAPK8IP3 In_Frame_Del p.K569del 0.21 TCGA-CK-4951-01 16 1815162 1815162 G A MAPK8IP3 Missense_Mutation p.C809Y 0.28 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 16 18470979 18470979 C T NPIPA7 5'Flank 0.20 TCGA-CK-4951-01 16 18597215 18597215 C T ABCC6P1 RNA 0.44 TCGA-CK-4951-01 16 18603942 18603942 C T ABCC6P1 RNA 0.24 TCGA-CK-4951-01 16 188154 188154 T A NPRL3 Missense_Mutation p.Q38L 0.30 tolerated(0.36) benign(0.029) TCGA-CK-4951-01 16 18861284 18861284 A T SMG1 Silent p.T1816T 0.31 TCGA-CK-4951-01 16 19132698 19132698 C T ITPRIPL2 3'UTR 0.33 TCGA-CK-4951-01 16 19522231 19522231 C T GDE1 Missense_Mutation p.R158K 0.31 tolerated(0.48) benign(0.002) TCGA-CK-4951-01 16 19522236 19522236 G T GDE1 Silent p.T156T 0.33 TCGA-CK-4951-01 16 19725791 19725793 CTT - KNOP1 In_Frame_Del p.K189del 0.26 TCGA-CK-4951-01 16 19729795 19729795 A T IQCK Missense_Mutation p.E56V 0.32 deleterious(0.03) possibly_damaging(0.853) TCGA-CK-4951-01 16 1995536 1995536 G A RPL3L Silent p.G377G 0.26 TCGA-CK-4951-01 16 2028177 2028177 A T TBL3 Missense_Mutation p.E697V 0.23 deleterious(0.02) benign(0.371) TCGA-CK-4951-01 16 2030683 2030683 G A NOXO1 Missense_Mutation p.S66F 0.35 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 16 2048371 2048371 C T ZNF598 Silent p.Q859Q 0.17 TCGA-CK-4951-01 16 20486725 20486725 C T ACSM2A Silent p.P312P 0.10 TCGA-CK-4951-01 16 2051599 2051599 C T ZNF598 Missense_Mutation p.S333N 0.18 probably_damaging(0.999) TCGA-CK-4951-01 16 2086819 2086819 G A SLC9A3R2 Missense_Mutation p.D229N 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 2087886 2087886 G A SLC9A3R2 Silent p.T305T 0.36 TCGA-CK-4951-01 16 20976007 20976007 C T DNAH3 Missense_Mutation p.D3067N 0.29 deleterious(0) probably_damaging(0.971) TCGA-CK-4951-01 16 20976327 20976327 C T DNAH3 Missense_Mutation p.C2960Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 20976562 20976562 C T DNAH3 Missense_Mutation p.E2882K 0.41 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 20996795 20996795 C T DNAH3 Silent p.L2423L 0.32 TCGA-CK-4951-01 16 21008629 21008630 - G DNAH3 Frame_Shift_Ins p.G2193Rfs*6 0.22 TCGA-CK-4951-01 16 2106743 2106743 C T TSC2 Silent p.V249V 0.44 TCGA-CK-4951-01 16 21136505 21136505 C T DNAH3 Missense_Mutation p.M465I 0.38 tolerated(0.54) benign(0.007) TCGA-CK-4951-01 16 21156701 21156701 C T DNAH3 Silent p.P83P 0.35 TCGA-CK-4951-01 16 21181847 21181847 G A TMEM159 Silent p.S62S 0.25 TCGA-CK-4951-01 16 21181881 21181881 G A TMEM159 Missense_Mutation p.V74M 0.26 deleterious(0.02) benign(0.145) TCGA-CK-4951-01 16 21216836 21216836 G A ZP2 Missense_Mutation p.P200S 0.20 tolerated(0.79) benign(0.001) TCGA-CK-4951-01 16 2124311 2124311 G A TSC2 Silent p.A822A 0.27 TCGA-CK-4951-01 16 2130356 2130356 G A TSC2 Silent p.E1196E 0.33 TCGA-CK-4951-01 16 2144100 2144100 G A PKD1 Silent p.S3537S 0.39 TCGA-CK-4951-01 16 2147329 2147329 A T PKD1 Missense_Mutation p.S3466T 0.50 benign(0.168) TCGA-CK-4951-01 16 2149735 2149735 G A PKD1 Silent p.V3320V 0.33 TCGA-CK-4951-01 16 2152195 2152195 G A PKD1 Silent p.Y3088Y 0.31 TCGA-CK-4951-01 16 2153843 2153843 G A PKD1 Silent p.L2739L 0.32 TCGA-CK-4951-01 16 2156129 2156129 G A PKD1 Nonsense_Mutation p.Q2556* 0.33 TCGA-CK-4951-01 16 2156588 2156588 G A PKD1 Missense_Mutation p.R2434W 0.18 probably_damaging(1) TCGA-CK-4951-01 16 2159371 2159371 C T PKD1 Missense_Mutation p.G1933R 0.24 benign(0.344) TCGA-CK-4951-01 16 2159770 2159770 C T PKD1 Missense_Mutation p.V1800M 0.42 possibly_damaging(0.781) TCGA-CK-4951-01 16 2161142 2161142 G A PKD1 Silent p.C1342C 0.35 TCGA-CK-4951-01 16 2161845 2161845 G A PKD1 Missense_Mutation p.S1108F 0.30 benign(0.168) TCGA-CK-4951-01 16 2223298 2223298 G A TRAF7 Missense_Mutation p.A304T 0.20 tolerated(0.58) benign(0.05) TCGA-CK-4951-01 16 2228642 2228642 G A CASKIN1 Missense_Mutation p.S1402L 0.33 unknown(0) TCGA-CK-4951-01 16 22326515 22326515 T C POLR3E Missense_Mutation p.Y210H 0.11 tolerated(0.12) benign(0.049) TCGA-CK-4951-01 16 2235352 2235352 G A CASKIN1 Missense_Mutation p.S369F 0.67 benign(0.342) TCGA-CK-4951-01 16 2283535 2283535 G A E4F1 Missense_Mutation p.A385T 0.39 tolerated(0.27) benign(0.047) TCGA-CK-4951-01 16 2287052 2287052 A G DNASE1L2 Missense_Mutation p.Y53C 0.39 tolerated(0.37) probably_damaging(1) TCGA-CK-4951-01 16 2287095 2287095 C T DNASE1L2 Silent p.S67S 0.28 TCGA-CK-4951-01 16 2287103 2287103 C T DNASE1L2 Missense_Mutation p.S70F 0.25 deleterious(0.02) possibly_damaging(0.637) TCGA-CK-4951-01 16 2287594 2287594 G A DNASE1L2 Missense_Mutation p.E179K 0.44 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 2287600 2287600 G A DNASE1L2 Missense_Mutation p.D181N 0.42 tolerated(0.05) possibly_damaging(0.828) TCGA-CK-4951-01 16 2293105 2293105 C T ECI1 Silent p.P228P 0.35 TCGA-CK-4951-01 16 23444893 23444893 C T COG7 Nonsense_Mutation p.W261* 0.18 TCGA-CK-4951-01 16 23507023 23507023 G A GGA2 Silent p.D56D 0.15 TCGA-CK-4951-01 16 2367761 2367761 T C ABCA3 Missense_Mutation p.Y293C 0.29 deleterious(0) probably_damaging(0.972) TCGA-CK-4951-01 16 24192114 24192114 C T PRKCB Silent p.D466D 0.35 TCGA-CK-4951-01 16 24196499 24196499 T A PRKCB Missense_Mutation p.M534K 0.08 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 16 24581189 24581189 A - RBBP6 Frame_Shift_Del p.A1062Pfs*49 0.24 TCGA-CK-4951-01 16 24802953 24802953 G A TNRC6A Missense_Mutation p.R997H 0.34 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 2482971 2482971 C T CCNF Nonsense_Mutation p.Q61* 0.23 TCGA-CK-4951-01 16 25251542 25251542 G A ZKSCAN2 Silent p.C833C 0.40 TCGA-CK-4951-01 16 25258219 25258219 G A ZKSCAN2 Missense_Mutation p.P433L 0.32 tolerated(0.2) benign(0.003) TCGA-CK-4951-01 16 2546359 2546359 C T RP11-20I23.1 Silent p.D70D 0.26 TCGA-CK-4951-01 16 2564085 2564085 C - ATP6V0C 5'UTR 0.24 TCGA-CK-4951-01 16 2569578 2569578 C T ATP6V0C Silent p.G100G 0.33 TCGA-CK-4951-01 16 27231781 27231781 C T KDM8 Missense_Mutation p.T392M 0.26 deleterious(0.02) possibly_damaging(0.791) TCGA-CK-4951-01 16 2810372 2810372 C T SRRM2 Nonsense_Mutation p.R302* 0.27 TCGA-CK-4951-01 16 2812009 2812009 C T SRRM2 Nonsense_Mutation p.R494* 0.29 TCGA-CK-4951-01 16 2818136 2818136 C T SRRM2 Missense_Mutation p.S2536L 0.18 probably_damaging(0.99) TCGA-CK-4951-01 16 2821621 2821621 G A TCEB2 Intron 0.33 TCGA-CK-4951-01 16 28497920 28497920 G A CLN3 Missense_Mutation p.S171F 0.58 deleterious(0) probably_damaging(0.94) TCGA-CK-4951-01 16 28617218 28617218 G A SULT1A1 Missense_Mutation p.A271V 0.15 deleterious(0.03) benign(0.133) TCGA-CK-4951-01 16 28885113 28885113 C T SH2B1 Missense_Mutation p.A748V 0.25 deleterious_low_confidence(0) benign(0.001) TCGA-CK-4951-01 16 28925838 28925838 G A RABEP2 Missense_Mutation p.P205S 0.25 tolerated(0.12) benign(0.313) TCGA-CK-4951-01 16 28950264 28950264 G T CD19 Missense_Mutation p.G552C 0.39 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 16 28993317 28993317 G A SPNS1 Missense_Mutation p.R302H 0.25 tolerated(0.12) benign(0.187) TCGA-CK-4951-01 16 28997182 28997182 C T LAT Missense_Mutation p.P82S 0.32 tolerated_low_confidence(0.18) possibly_damaging(0.647) TCGA-CK-4951-01 16 29001282 29001282 A T LAT Missense_Mutation p.E253D 0.35 tolerated_low_confidence(0.58) benign(0.003) TCGA-CK-4951-01 16 2903942 2903942 C T PRSS22 Missense_Mutation p.R214Q 0.30 tolerated(0.2) benign(0.098) TCGA-CK-4951-01 16 29118797 29118797 C T CTB-134H23.3 RNA 0.40 TCGA-CK-4951-01 16 29118806 29118806 A G CTB-134H23.3 RNA 0.41 TCGA-CK-4951-01 16 2983506 2983506 G A FLYWCH1 Missense_Mutation p.R390Q 0.37 tolerated(0.27) probably_damaging(0.929) TCGA-CK-4951-01 16 29845316 29845316 G - MVP Frame_Shift_Del p.R169Sfs*23 0.23 TCGA-CK-4951-01 16 29847073 29847073 T A MVP Missense_Mutation p.F209Y 0.09 tolerated(1) benign(0.197) TCGA-CK-4951-01 16 29851610 29851610 G T MVP Nonsense_Mutation p.E341* 0.25 TCGA-CK-4951-01 16 29974805 29974805 C T TMEM219 Missense_Mutation p.H84Y 0.24 deleterious(0.04) possibly_damaging(0.73) TCGA-CK-4951-01 16 2998885 2998885 G A FLYWCH1 3'UTR 0.44 TCGA-CK-4951-01 16 29999170 29999170 C T TAOK2 Nonsense_Mutation p.R1193* 0.24 TCGA-CK-4951-01 16 30004824 30004824 G A HIRIP3 Missense_Mutation p.A488V 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 30012819 30012819 G A INO80E Missense_Mutation p.E161K 0.32 tolerated(0.17) probably_damaging(0.953) TCGA-CK-4951-01 16 30021521 30021521 C A DOC2A Missense_Mutation p.R8L 0.26 deleterious(0.03) benign(0.194) TCGA-CK-4951-01 16 30080704 30080704 C T ALDOA Silent p.T260T 0.27 TCGA-CK-4951-01 16 30124850 30124850 G A GDPD3 5'UTR 0.23 TCGA-CK-4951-01 16 3016707 3016707 G A KREMEN2 Missense_Mutation p.R184H 0.29 tolerated(0.21) benign(0.43) TCGA-CK-4951-01 16 30196592 30196592 C T CORO1A Missense_Mutation p.A21V 0.28 deleterious(0.02) benign(0.264) TCGA-CK-4951-01 16 3021904 3021904 G A PAQR4 Silent p.V259V 0.43 TCGA-CK-4951-01 16 3025725 3025725 G A PKMYT1 Missense_Mutation p.A156V 0.18 tolerated(0.12) benign(0.079) TCGA-CK-4951-01 16 30365586 30365586 A T CD2BP2 Missense_Mutation p.S46T 0.30 tolerated(0.09) probably_damaging(0.997) TCGA-CK-4951-01 16 30371116 30371116 G A TBC1D10B Missense_Mutation p.P440S 0.38 deleterious(0.03) possibly_damaging(0.522) TCGA-CK-4951-01 16 30389264 30389264 C T MYLPF 3'UTR 0.29 TCGA-CK-4951-01 16 304594 304594 T C ITFG3 Missense_Mutation p.F61S 0.36 tolerated(0.08) possibly_damaging(0.854) TCGA-CK-4951-01 16 304608 304608 G A ITFG3 Missense_Mutation p.V66I 0.29 tolerated(0.47) benign(0.025) TCGA-CK-4951-01 16 30536875 30536875 C A ZNF768 Missense_Mutation p.D196Y 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CK-4951-01 16 30771723 30771723 G A C16orf93 Silent p.D117D 0.31 TCGA-CK-4951-01 16 30778142 30778142 G C RNF40 Missense_Mutation p.E458D 0.43 tolerated(0.08) possibly_damaging(0.669) TCGA-CK-4951-01 16 30793085 30793085 G A ZNF629 Missense_Mutation p.A855V 0.29 tolerated(0.1) benign(0.287) TCGA-CK-4951-01 16 30795115 30795115 G A ZNF629 Silent p.N178N 0.38 TCGA-CK-4951-01 16 30900249 30900249 C T BCL7C Missense_Mutation p.A154T 0.26 tolerated(0.52) benign(0.011) TCGA-CK-4951-01 16 31045384 31045384 G A STX4 Silent p.V27V 0.33 TCGA-CK-4951-01 16 31072707 31072707 G A ZNF668 Silent p.P537P 0.37 TCGA-CK-4951-01 16 31072898 31072898 C T ZNF668 Missense_Mutation p.G474R 0.50 tolerated(0.44) benign(0.112) TCGA-CK-4951-01 16 31073120 31073120 C G ZNF668 Missense_Mutation p.A400P 0.25 deleterious(0.02) probably_damaging(0.988) TCGA-CK-4951-01 16 31073393 31073393 C T ZNF668 Missense_Mutation p.G309S 0.43 deleterious(0.01) possibly_damaging(0.795) TCGA-CK-4951-01 16 31075135 31075135 G A ZNF668 Missense_Mutation p.R239W 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 3108548 3108548 G A MMP25 Missense_Mutation p.R432H 0.36 deleterious(0.01) probably_damaging(0.97) TCGA-CK-4951-01 16 31094349 31094349 C - ZNF646 Frame_Shift_Del p.T1814Rfs*47 0.17 TCGA-CK-4951-01 16 31121606 31121606 C T BCKDK Silent p.L168L 0.09 TCGA-CK-4951-01 16 31123326 31123326 G A BCKDK Missense_Mutation p.A358T 0.30 tolerated(0.67) benign(0.013) TCGA-CK-4951-01 16 3119497 3119497 G A IL32 3'UTR 0.33 TCGA-CK-4951-01 16 31383048 31383048 C T ITGAX Silent p.S701S 0.44 TCGA-CK-4951-01 16 3139629 3139629 G A ZSCAN10 Silent p.G547G 0.28 TCGA-CK-4951-01 16 31435264 31435264 C T ITGAD Silent p.F1048F 0.19 TCGA-CK-4951-01 16 31476670 31476670 C T ARMC5 Intron 0.44 TCGA-CK-4951-01 16 31500059 31500059 C T SLC5A2 Missense_Mutation p.R416C 0.24 tolerated(0.07) benign(0.002) TCGA-CK-4951-01 16 3169283 3169283 C G ZNF205 Missense_Mutation p.Q208E 0.22 tolerated(1) benign(0.001) TCGA-CK-4951-01 16 3188484 3188484 C T ZNF213 Silent p.P155P 0.11 TCGA-CK-4951-01 16 3191270 3191270 C T ZNF213 Silent p.C434C 0.37 TCGA-CK-4951-01 16 325029 325029 G A RGS11 Missense_Mutation p.R89C 0.38 deleterious(0.03) benign(0.027) TCGA-CK-4951-01 16 33020749 33020749 A T IGHV3OR16-8 Missense_Mutation p.M53L 0.31 deleterious_low_confidence(0.03) benign(0.153) TCGA-CK-4951-01 16 3349579 3349579 G A TIGD7 Nonsense_Mutation p.Q346* 0.34 TCGA-CK-4951-01 16 335550 335550 G A PDIA2 Silent p.V322V 0.25 TCGA-CK-4951-01 16 33647550 33647550 G A RP11-812E19.9 Missense_Mutation p.A17V 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-CK-4951-01 16 3452182 3452182 C - ZNF174 Frame_Shift_Del p.Q61Kfs*30 0.09 TCGA-CK-4951-01 16 3551069 3551069 T C CLUAP1 Translation_Start_Site p.M1? 0.36 deleterious(0) probably_damaging(0.912) TCGA-CK-4951-01 16 3640861 3640861 G A SLX4 Silent p.C926C 0.26 TCGA-CK-4951-01 16 3707246 3707246 G T DNASE1 Missense_Mutation p.W203L 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 3708832 3708832 C T TRAP1 Missense_Mutation p.A659T 0.18 tolerated(0.83) benign(0.008) TCGA-CK-4951-01 16 3828719 3828719 G A CREBBP Silent p.Y641Y 0.38 TCGA-CK-4951-01 16 4242786 4242786 T C SRL Missense_Mutation p.M264V 0.34 deleterious(0) benign(0.023) TCGA-CK-4951-01 16 424397 424397 A T TMEM8A Missense_Mutation p.W527R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 426256 426256 G A TMEM8A Silent p.F368F 0.16 TCGA-CK-4951-01 16 427503 427503 G A TMEM8A Nonsense_Mutation p.Q128* 0.31 TCGA-CK-4951-01 16 4386903 4386903 G A GLIS2 Missense_Mutation p.G318D 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 4386916 4386916 C T GLIS2 Silent p.S322S 0.33 TCGA-CK-4951-01 16 4414634 4414634 G A CORO7 Silent p.T367T 0.26 TCGA-CK-4951-01 16 4430958 4430958 G A VASN Missense_Mutation p.G27D 0.33 tolerated(0.43) benign(0.34) TCGA-CK-4951-01 16 4432469 4432469 T A VASN Missense_Mutation p.Y531N 0.41 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 4563712 4563712 T A CDIP1 Missense_Mutation p.T76S 0.27 tolerated(0.96) benign(0.001) TCGA-CK-4951-01 16 460998 460998 G A DECR2 Missense_Mutation p.E195K 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 46990944 46990944 C T DNAJA2 Silent p.Q412Q 0.30 TCGA-CK-4951-01 16 4702734 4702734 T C MGRN1 Missense_Mutation p.Y118H 0.28 deleterious(0.02) probably_damaging(1) TCGA-CK-4951-01 16 47143495 47143495 T C NETO2 Missense_Mutation p.N261S 0.08 tolerated(0.09) benign(0.259) TCGA-CK-4951-01 16 4730082 4730082 A T MGRN1 Missense_Mutation p.K372I 0.18 tolerated(0.11) benign(0.099) TCGA-CK-4951-01 16 4750828 4750828 G A ANKS3 Intron 0.36 TCGA-CK-4951-01 16 476705 476705 C T RAB11FIP3 Silent p.V233V 0.28 TCGA-CK-4951-01 16 48395430 48395430 T C SIAH1 3'UTR 0.25 TCGA-CK-4951-01 16 48595257 48595257 G A N4BP1 Missense_Mutation p.H433Y 0.30 tolerated(0.29) benign(0.003) TCGA-CK-4951-01 16 4935532 4935532 C T PPL Missense_Mutation p.A1042T 0.39 tolerated(0.23) benign(0.03) TCGA-CK-4951-01 16 49671607 49671607 G A ZNF423 Missense_Mutation p.P486S 0.37 tolerated(0.77) benign(0.015) TCGA-CK-4951-01 16 4986982 4986982 C T PPL Intron 0.24 TCGA-CK-4951-01 16 50102765 50102765 C T HEATR3 Missense_Mutation p.A129V 0.30 tolerated(0.1) benign(0.018) TCGA-CK-4951-01 16 50136348 50136348 T A HEATR3 Splice_Site p.X640_splice 0.38 TCGA-CK-4951-01 16 50326599 50326599 G A ADCY7 Missense_Mutation p.A184T 0.17 tolerated(0.11) possibly_damaging(0.856) TCGA-CK-4951-01 16 5053570 5053570 C T SEC14L5 Missense_Mutation p.T433I 0.54 deleterious(0) possibly_damaging(0.694) TCGA-CK-4951-01 16 5078135 5078135 C T NAGPA Silent p.V324V 0.36 TCGA-CK-4951-01 16 53243679 53243679 A - CHD9 Frame_Shift_Del p.T582Qfs*7 0.22 TCGA-CK-4951-01 16 55705988 55705988 G A SLC6A2 Missense_Mutation p.S182N 0.32 deleterious(0) possibly_damaging(0.521) TCGA-CK-4951-01 16 55731895 55731895 C T SLC6A2 Silent p.V449V 0.47 TCGA-CK-4951-01 16 56601712 56601712 T A MT4 Nonsense_Mutation p.C27* 0.29 TCGA-CK-4951-01 16 56624781 56624781 G A MT3 Missense_Mutation p.E43K 0.28 tolerated(0.11) unknown(0) TCGA-CK-4951-01 16 56652550 56652550 C T MT1L RNA 0.43 TCGA-CK-4951-01 16 56892497 56892497 A G MIR138-2 RNA 0.29 TCGA-CK-4951-01 16 56906599 56906599 C T SLC12A3 Silent p.D332D 0.39 TCGA-CK-4951-01 16 56996944 56996944 G A CETP Silent p.V47V 0.43 TCGA-CK-4951-01 16 57159818 57159818 C T CPNE2 Missense_Mutation p.S325F 0.26 deleterious(0.04) benign(0.163) TCGA-CK-4951-01 16 57416574 57416574 T A CX3CL1 Missense_Mutation p.F275Y 0.28 deleterious(0) possibly_damaging(0.584) TCGA-CK-4951-01 16 57474789 57474789 T A CIAPIN1 Nonsense_Mutation p.K18* 0.26 TCGA-CK-4951-01 16 57486745 57486745 A G COQ9 Missense_Mutation p.D92G 0.32 tolerated(0.25) benign(0.002) TCGA-CK-4951-01 16 57508703 57508703 A T DOK4 Splice_Site p.X200_splice 0.44 TCGA-CK-4951-01 16 57719665 57719665 A T GPR97 Missense_Mutation p.K456M 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 57732838 57732838 C G CCDC135 Missense_Mutation p.L94V 0.35 tolerated(0.08) probably_damaging(0.944) TCGA-CK-4951-01 16 57787018 57787018 C T KATNB1 Silent p.V295V 0.43 TCGA-CK-4951-01 16 57793728 57793728 C T KIFC3 Silent p.T796T 0.27 TCGA-CK-4951-01 16 57917967 57917967 T C CNGB1 3'UTR 0.26 TCGA-CK-4951-01 16 57974189 57974189 G A CNGB1 Silent p.G386G 0.31 TCGA-CK-4951-01 16 58011771 58011771 G A TEPP Silent p.V72V 0.24 TCGA-CK-4951-01 16 58031932 58031932 C T ZNF319 Missense_Mutation p.V80M 0.29 tolerated(0.1) benign(0.035) TCGA-CK-4951-01 16 58319895 58319895 A G PRSS54 Silent p.H156H 0.28 TCGA-CK-4951-01 16 58545570 58545570 G A NDRG4 3'UTR 0.27 TCGA-CK-4951-01 16 58545575 58545575 G A NDRG4 3'UTR 0.27 TCGA-CK-4951-01 16 58592452 58592452 C T CNOT1 Missense_Mutation p.A753T 0.23 tolerated(0.71) benign(0.079) TCGA-CK-4951-01 16 58749951 58749951 G A GOT2 Missense_Mutation p.A329V 0.19 tolerated(0.08) benign(0.002) TCGA-CK-4951-01 16 599008 599008 G A CAPN15 Missense_Mutation p.V489M 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 599616 599616 C T CAPN15 Missense_Mutation p.A615V 0.26 deleterious(0.03) probably_damaging(1) TCGA-CK-4951-01 16 602440 602440 G A CAPN15 Missense_Mutation p.D883N 0.44 tolerated(0.27) probably_damaging(0.973) TCGA-CK-4951-01 16 602970 602970 C G CAPN15 Missense_Mutation p.C1004W 0.20 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 602974 602974 G A CAPN15 Missense_Mutation p.D1006N 0.31 tolerated(0.12) probably_damaging(0.97) TCGA-CK-4951-01 16 615494 615494 T A C16orf11 3'UTR 0.36 TCGA-CK-4951-01 16 633625 633625 C T PIGQ Silent p.V758V 0.30 TCGA-CK-4951-01 16 65038658 65038658 G A CDH11 Missense_Mutation p.H39Y 0.33 deleterious(0.02) benign(0.04) TCGA-CK-4951-01 16 66643416 66643416 G C CMTM3 Missense_Mutation p.A128P 0.21 deleterious(0.03) possibly_damaging(0.891) TCGA-CK-4951-01 16 66919272 66919272 G T PDP2 Missense_Mutation p.S362I 0.29 deleterious(0.05) possibly_damaging(0.797) TCGA-CK-4951-01 16 66920212 66920212 A T PDP2 3'UTR 0.28 TCGA-CK-4951-01 16 66997116 66997116 C T CES3 Silent p.T39T 0.14 TCGA-CK-4951-01 16 66997277 66997277 C T CES3 Missense_Mutation p.A93V 0.27 tolerated(0.15) benign(0.08) TCGA-CK-4951-01 16 66997493 66997493 C T CES3 Silent p.V129V 0.16 TCGA-CK-4951-01 16 67183418 67183418 T A B3GNT9 Missense_Mutation p.Q324L 0.22 tolerated(0.16) benign(0.216) TCGA-CK-4951-01 16 67188791 67188791 C T TRADD Missense_Mutation p.G234R 0.14 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 67188802 67188802 C A TRADD Missense_Mutation p.W230L 0.17 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 16 67218611 67218611 G T EXOC3L1 Silent p.R670R 0.35 TCGA-CK-4951-01 16 67270523 67270523 T A FHOD1 Missense_Mutation p.N419I 0.12 tolerated(0.11) benign(0.189) TCGA-CK-4951-01 16 67319026 67319026 C T PLEKHG4 Silent p.A701A 0.38 TCGA-CK-4951-01 16 67325658 67325658 G A KCTD19 Silent p.P767P 0.31 TCGA-CK-4951-01 16 67470004 67470004 G A HSD11B2 Missense_Mutation p.R208H 0.26 deleterious(0.01) benign(0.103) TCGA-CK-4951-01 16 67575651 67575651 C T FAM65A Missense_Mutation p.P369L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 67662324 67662324 G A CTCF Missense_Mutation p.A524T 0.29 tolerated(0.4) benign(0.013) TCGA-CK-4951-01 16 67693837 67693837 C T ACD Missense_Mutation p.V157M 0.25 tolerated(0.07) possibly_damaging(0.797) TCGA-CK-4951-01 16 67862672 67862672 C T CENPT Missense_Mutation p.R452Q 0.29 tolerated(0.17) benign(0.003) TCGA-CK-4951-01 16 67865784 67865784 C T CENPT Silent p.L132L 0.30 TCGA-CK-4951-01 16 67876631 67876631 C T THAP11 Silent p.H58H 0.38 TCGA-CK-4951-01 16 67911738 67911738 G A EDC4 Missense_Mutation p.G295D 0.45 deleterious(0.03) probably_damaging(1) TCGA-CK-4951-01 16 67943497 67943497 C T PSKH1 Missense_Mutation p.A282V 0.30 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 16 67977986 67977986 G A LCAT Missense_Mutation p.P7S 0.41 deleterious_low_confidence(0.01) benign(0.004) TCGA-CK-4951-01 16 67977988 67977988 G A LCAT Missense_Mutation p.S6F 0.43 deleterious_low_confidence(0) benign(0.188) TCGA-CK-4951-01 16 67981248 67981248 G A SLC12A4 Silent p.H688H 0.18 TCGA-CK-4951-01 16 68009872 68009872 C T DPEP3 Silent p.V446V 0.36 TCGA-CK-4951-01 16 68087555 68087555 G A DUS2 Silent p.Q87Q 0.31 TCGA-CK-4951-01 16 68380050 68380050 C A PRMT7 Missense_Mutation p.P353H 0.28 tolerated(0.11) benign(0.177) TCGA-CK-4951-01 16 69056762 69056762 G A TANGO6 Silent p.L958L 0.32 TCGA-CK-4951-01 16 69354147 69354147 G A VPS4A Missense_Mutation p.E242K 0.31 deleterious(0) probably_damaging(0.976) TCGA-CK-4951-01 16 69356565 69356565 G A VPS4A Missense_Mutation p.V392I 0.23 tolerated(0.49) benign(0.019) TCGA-CK-4951-01 16 69783192 69783192 T A NOB1 Missense_Mutation p.E150V 0.20 tolerated(0.06) benign(0.015) TCGA-CK-4951-01 16 700583 700583 C T WDR90 Nonsense_Mutation p.Q145* 0.38 TCGA-CK-4951-01 16 70154498 70154498 C T PDPR Missense_Mutation p.R35C 0.34 tolerated(0.08) benign(0.163) TCGA-CK-4951-01 16 70296371 70296371 C T AARS Missense_Mutation p.E517K 0.39 tolerated(0.39) benign(0.075) TCGA-CK-4951-01 16 703620 703620 G A WDR90 Silent p.G443G 0.26 TCGA-CK-4951-01 16 70503161 70503161 C T FUK Missense_Mutation p.A297V 0.30 tolerated(0.13) benign(0.022) TCGA-CK-4951-01 16 70817361 70817361 C T VAC14 Missense_Mutation p.E231K 0.20 deleterious(0) probably_damaging(0.931) TCGA-CK-4951-01 16 70820162 70820162 C T VAC14 Missense_Mutation p.G71R 0.35 deleterious(0) probably_damaging(0.951) TCGA-CK-4951-01 16 70834763 70834763 A T VAC14 Missense_Mutation p.I14N 0.52 deleterious(0) benign(0.417) TCGA-CK-4951-01 16 70871710 70871710 C T HYDIN Silent p.E4375E 0.26 TCGA-CK-4951-01 16 70916585 70916585 A T HYDIN Missense_Mutation p.V3398E 0.35 possibly_damaging(0.904) TCGA-CK-4951-01 16 709372 709372 C T WDR90 Silent p.G1060G 0.22 TCGA-CK-4951-01 16 71065786 71065786 T C HYDIN Missense_Mutation p.N855S 0.32 benign(0.001) TCGA-CK-4951-01 16 711710 711710 G A WDR90 Missense_Mutation p.G1263S 0.22 tolerated(0.6) benign(0.003) TCGA-CK-4951-01 16 71512166 71512166 T A ZNF19 Missense_Mutation p.D80V 0.32 tolerated(0.33) benign(0.296) TCGA-CK-4951-01 16 71660432 71660432 C T MARVELD3 Silent p.R100R 0.25 TCGA-CK-4951-01 16 71692267 71692267 C G PHLPP2 Splice_Site p.X717_splice 0.40 TCGA-CK-4951-01 16 71883912 71883912 C T ATXN1L Missense_Mutation p.A90V 0.25 deleterious(0.01) benign(0.248) TCGA-CK-4951-01 16 72055120 72055120 C T DHODH Silent p.A205A 0.36 TCGA-CK-4951-01 16 72139016 72139016 C T DHX38 Missense_Mutation p.P748S 0.40 tolerated(0.11) possibly_damaging(0.792) TCGA-CK-4951-01 16 722996 722996 C T RHOT2 Silent p.V532V 0.17 TCGA-CK-4951-01 16 727061 727061 C A RHBDL1 Missense_Mutation p.H238N 0.33 tolerated(0.23) probably_damaging(0.968) TCGA-CK-4951-01 16 727066 727066 C T RHBDL1 Silent p.P239P 0.32 TCGA-CK-4951-01 16 72822200 72822200 G A ZFHX3 Silent p.G3325G 0.33 TCGA-CK-4951-01 16 72832299 72832299 C T ZFHX3 Missense_Mutation p.A1428T 0.10 probably_damaging(0.989) TCGA-CK-4951-01 16 74447493 74447493 A G CLEC18B Missense_Mutation p.C180R 0.24 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 16 74455157 74455157 T C CLEC18B Silent p.P4P 0.21 TCGA-CK-4951-01 16 74640952 74640952 G A GLG1 Missense_Mutation p.S14L 0.25 deleterious_low_confidence(0.03) benign(0.003) TCGA-CK-4951-01 16 74976662 74976662 C T WDR59 Missense_Mutation p.G170S 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-CK-4951-01 16 74985423 74985423 G A WDR59 Missense_Mutation p.L87F 0.24 deleterious(0.01) possibly_damaging(0.852) TCGA-CK-4951-01 16 74990390 74990390 G T WDR59 Missense_Mutation p.H75N 0.28 tolerated(0.07) benign(0.07) TCGA-CK-4951-01 16 75033906 75033906 G A ZNRF1 Missense_Mutation p.D113N 0.34 tolerated(0.09) benign(0.068) TCGA-CK-4951-01 16 75263657 75263657 C T BCAR1 Missense_Mutation p.A835T 0.41 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 75269254 75269254 C T BCAR1 Missense_Mutation p.V561I 0.29 deleterious(0.05) benign(0.439) TCGA-CK-4951-01 16 75271226 75271226 C T BCAR1 Missense_Mutation p.R263H 0.21 deleterious(0) probably_damaging(0.975) TCGA-CK-4951-01 16 75513566 75513566 G A CHST6 Missense_Mutation p.S54F 0.45 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 75564065 75564065 G A CHST5 Missense_Mutation p.S73L 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 75681499 75681499 G A KARS 5'UTR 0.42 TCGA-CK-4951-01 16 76592428 76592428 G A CNTNAP4 Missense_Mutation p.A1186T 0.35 deleterious(0.02) benign(0.323) TCGA-CK-4951-01 16 77246266 77246266 G A SYCE1L Missense_Mutation p.G194E 0.34 deleterious(0.04) benign(0.397) TCGA-CK-4951-01 16 77375633 77375633 C T ADAMTS18 Missense_Mutation p.A560T 0.40 deleterious(0) probably_damaging(0.979) TCGA-CK-4951-01 16 780420 780420 C T NARFL Nonsense_Mutation p.W476* 0.45 TCGA-CK-4951-01 16 78420804 78420804 T C WWOX Silent p.R188R 0.31 TCGA-CK-4951-01 16 79634315 79634315 G A MAF 5'UTR 0.35 TCGA-CK-4951-01 16 81180956 81180956 G A PKD1L2 RNA 0.24 TCGA-CK-4951-01 16 81232286 81232286 G A PKD1L2 Silent p.R36R 0.31 TCGA-CK-4951-01 16 81320986 81320986 G A BCMO1 Silent p.A463A 0.31 TCGA-CK-4951-01 16 81398997 81398997 G A GAN Silent p.V472V 0.26 TCGA-CK-4951-01 16 81399036 81399036 C T GAN Silent p.S485S 0.36 TCGA-CK-4951-01 16 814679 814679 C T MSLN Silent p.P111P 0.35 TCGA-CK-4951-01 16 81685965 81685965 C T CMIP Missense_Mutation p.S212L 0.29 tolerated(0.18) benign(0.002) TCGA-CK-4951-01 16 816933 816933 C T MSLN Silent p.D482D 0.38 TCGA-CK-4951-01 16 81891937 81891937 C T PLCG2 Missense_Mutation p.A136V 0.29 deleterious(0.02) possibly_damaging(0.802) TCGA-CK-4951-01 16 824477 824477 C G MSLNL Silent p.G588G 0.24 TCGA-CK-4951-01 16 83378473 83378473 G A CDH13 Missense_Mutation p.V262M 0.08 deleterious(0) probably_damaging(0.949) TCGA-CK-4951-01 16 837636 837636 C T RPUSD1 Nonsense_Mutation p.W34* 0.36 TCGA-CK-4951-01 16 83948860 83948860 G A MLYCD Silent p.L416L 0.31 TCGA-CK-4951-01 16 84135520 84135520 C T MBTPS1 5'UTR 0.38 TCGA-CK-4951-01 16 84213667 84213667 G A TAF1C Silent p.R528R 0.36 TCGA-CK-4951-01 16 84229425 84229425 C - ADAD2 Frame_Shift_Del p.T437Pfs*22 0.19 TCGA-CK-4951-01 16 842335 842335 C A CHTF18 Missense_Mutation p.D438E 0.22 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 844122 844122 C T CHTF18 Missense_Mutation p.S624F 0.30 tolerated(0.28) benign(0.169) TCGA-CK-4951-01 16 84529454 84529454 G A TLDC1 Silent p.V73V 0.21 TCGA-CK-4951-01 16 84690746 84690746 G A KLHL36 Silent p.L111L 0.33 TCGA-CK-4951-01 16 847726 847726 C T CHTF18 Silent p.V922V 0.24 TCGA-CK-4951-01 16 85111052 85111052 C T KIAA0513 Missense_Mutation p.P199L 0.32 tolerated(0.66) benign(0) TCGA-CK-4951-01 16 85695039 85695039 C T GSE1 Missense_Mutation p.P643L 0.38 tolerated(0.2) benign(0.004) TCGA-CK-4951-01 16 85711785 85711785 T A GINS2 3'UTR 0.32 TCGA-CK-4951-01 16 85813472 85813472 C T EMC8 Missense_Mutation p.D159N 0.29 tolerated(0.86) probably_damaging(0.978) TCGA-CK-4951-01 16 85839436 85839436 C T COX4I1 Silent p.F113F 0.46 TCGA-CK-4951-01 16 86612387 86612387 C G FOXL1 Missense_Mutation p.L20V 0.38 tolerated(0.24) benign(0.145) TCGA-CK-4951-01 16 87723717 87723717 G A JPH3 Nonsense_Mutation p.W584* 0.38 TCGA-CK-4951-01 16 88052243 88052243 C T BANP Silent p.L281L 0.22 TCGA-CK-4951-01 16 88496612 88496612 C T ZNF469 Missense_Mutation p.R912C 0.58 benign(0.001) TCGA-CK-4951-01 16 8857942 8857942 G A ABAT Missense_Mutation p.R128K 0.21 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 16 88677725 88677725 G A ZC3H18 Missense_Mutation p.R419Q 0.35 tolerated_low_confidence(0.05) unknown(0) TCGA-CK-4951-01 16 88694162 88694162 G A ZC3H18 Silent p.P747P 0.36 TCGA-CK-4951-01 16 88721807 88721807 C T MVD Missense_Mutation p.V233M 0.31 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 16 88722593 88722593 G A MVD Nonsense_Mutation p.Q175* 0.35 TCGA-CK-4951-01 16 88767735 88767735 T A RNF166 Nonsense_Mutation p.K83* 0.46 TCGA-CK-4951-01 16 88767782 88767782 G A RNF166 Missense_Mutation p.P67L 0.26 deleterious(0.03) probably_damaging(0.989) TCGA-CK-4951-01 16 88767785 88767785 G A RNF166 Missense_Mutation p.S66F 0.24 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 16 88789034 88789034 G A PIEZO1 Missense_Mutation p.P1578S 0.24 tolerated(0.74) benign(0.004) TCGA-CK-4951-01 16 88891256 88891256 G A GALNS Silent p.G387G 0.21 TCGA-CK-4951-01 16 88947792 88947792 G C CBFA2T3 Missense_Mutation p.R437G 0.23 deleterious(0.01) probably_damaging(0.958) TCGA-CK-4951-01 16 89257819 89257819 C T CDH15 Silent p.S438S 0.32 TCGA-CK-4951-01 16 89257824 89257824 C T CDH15 Missense_Mutation p.A440V 0.32 tolerated(0.11) benign(0.024) TCGA-CK-4951-01 16 89293798 89293798 A T ZNF778 Nonsense_Mutation p.K340* 0.21 TCGA-CK-4951-01 16 89345637 89345637 T A ANKRD11 Missense_Mutation p.Y2438F 0.30 probably_damaging(0.995) TCGA-CK-4951-01 16 89346713 89346713 C G ANKRD11 Silent p.V2079V 0.32 TCGA-CK-4951-01 16 8952230 8952230 G - CARHSP1 Frame_Shift_Del p.D87Tfs*140 0.15 TCGA-CK-4951-01 16 89623324 89623324 G A SPG7 Silent p.V737V 0.23 TCGA-CK-4951-01 16 89704753 89704753 C T DPEP1 3'UTR 0.60 TCGA-CK-4951-01 16 89715814 89715814 G A CHMP1A Missense_Mutation p.A66V 0.39 deleterious(0) possibly_damaging(0.875) TCGA-CK-4951-01 16 89757938 89757938 G A CDK10 Missense_Mutation p.G107E 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 89763788 89763788 G A SPATA2L Missense_Mutation p.A410V 0.18 deleterious(0.01) benign(0.108) TCGA-CK-4951-01 16 89775683 89775683 C T VPS9D1 Missense_Mutation p.G517R 0.23 tolerated(0.96) benign(0.133) TCGA-CK-4951-01 16 89782892 89782892 C T VPS9D1 Missense_Mutation p.A137T 0.31 tolerated(0.34) benign(0.006) TCGA-CK-4951-01 16 89789802 89789802 G A ZNF276 Missense_Mutation p.V231M 0.15 tolerated(0.08) benign(0.118) TCGA-CK-4951-01 16 89790046 89790046 C T ZNF276 Missense_Mutation p.S312L 0.34 tolerated(0.33) benign(0.004) TCGA-CK-4951-01 16 8989506 8989506 C T USP7 Missense_Mutation p.R971Q 0.35 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 16 89972615 89972615 T C TCF25 Missense_Mutation p.Y548H 0.20 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 16 90110435 90110435 G A GAS8 3'UTR 0.31 TCGA-CK-4951-01 16 90128424 90128424 C T PRDM7 Missense_Mutation p.E263K 0.20 deleterious(0.05) possibly_damaging(0.771) TCGA-CK-4951-01 16 9017259 9017259 G A USP7 Missense_Mutation p.R66C 0.42 deleterious(0) probably_damaging(0.95) TCGA-CK-4951-01 16 921301 921301 C T LMF1 Nonsense_Mutation p.W313* 0.33 TCGA-CK-4951-01 16 9858232 9858232 C T GRIN2A Missense_Mutation p.A1057T 0.29 tolerated(0.31) benign(0.16) TCGA-CK-4951-01 17 10222117 10222117 G A MYH13 Missense_Mutation p.S1243F 0.36 deleterious(0.01) possibly_damaging(0.685) TCGA-CK-4951-01 17 10222121 10222121 G A MYH13 Missense_Mutation p.L1242F 0.36 deleterious(0) benign(0.132) TCGA-CK-4951-01 17 10222365 10222365 G A MYH13 Silent p.A1160A 0.27 TCGA-CK-4951-01 17 10303729 10303729 G A MYH8 Missense_Mutation p.A1238V 0.24 tolerated(0.68) benign(0.001) TCGA-CK-4951-01 17 10304038 10304038 G A MYH8 Missense_Mutation p.A1135V 0.10 tolerated(1) benign(0.021) TCGA-CK-4951-01 17 10312694 10312694 T - MYH8 Frame_Shift_Del p.N600Ifs*5 0.22 TCGA-CK-4951-01 17 10360966 10360966 A G MYH4 Silent p.Y556Y 0.24 TCGA-CK-4951-01 17 10432496 10432496 T C MYH2 Missense_Mutation p.K1113E 0.25 deleterious(0.02) probably_damaging(0.986) TCGA-CK-4951-01 17 11461276 11461276 C T SHISA6 Silent p.Y437Y 0.21 TCGA-CK-4951-01 17 11556094 11556094 C T DNAH9 Silent p.V790V 0.20 TCGA-CK-4951-01 17 12905822 12905822 A G ELAC2 Missense_Mutation p.I385T 0.36 tolerated(0.06) probably_damaging(0.933) TCGA-CK-4951-01 17 1374403 1374403 G A MYO1C Missense_Mutation p.A725V 0.30 tolerated(0.3) benign(0.235) TCGA-CK-4951-01 17 1375424 1375424 T A MYO1C Missense_Mutation p.K632N 0.53 deleterious(0) possibly_damaging(0.82) TCGA-CK-4951-01 17 14248953 14248953 G A HS3ST3B1 Missense_Mutation p.G388D 0.31 tolerated(0.07) benign(0.256) TCGA-CK-4951-01 17 15234479 15234479 T C TEKT3 Missense_Mutation p.T142A 0.27 deleterious(0.01) benign(0.13) TCGA-CK-4951-01 17 1531141 1531141 G A SLC43A2 Missense_Mutation p.R10W 0.28 deleterious(0) possibly_damaging(0.762) TCGA-CK-4951-01 17 1538723 1538723 C T SCARF1 Missense_Mutation p.E608K 0.31 deleterious(0.03) possibly_damaging(0.67) TCGA-CK-4951-01 17 1562822 1562822 G A PRPF8 Missense_Mutation p.T1656I 0.35 tolerated(0.07) benign(0.01) TCGA-CK-4951-01 17 1586853 1586853 G A PRPF8 Silent p.F81F 0.24 TCGA-CK-4951-01 17 16024375 16024375 G C NCOR1 Missense_Mutation p.P615A 0.18 possibly_damaging(0.719) TCGA-CK-4951-01 17 1628853 1628853 A G WDR81 Silent p.S200S 0.29 TCGA-CK-4951-01 17 1630464 1630464 G A WDR81 Silent p.T737T 0.40 TCGA-CK-4951-01 17 1635732 1635732 C T WDR81 Missense_Mutation p.P1424L 0.26 deleterious(0.01) possibly_damaging(0.557) TCGA-CK-4951-01 17 1636873 1636873 G T WDR81 Silent p.A1514A 0.30 TCGA-CK-4951-01 17 1637416 1637416 G A WDR81 Silent p.Q1695Q 0.50 TCGA-CK-4951-01 17 16701745 16701745 G A CCDC144A 3'UTR 0.32 TCGA-CK-4951-01 17 16705645 16705645 G A CCDC144A 3'UTR 0.23 TCGA-CK-4951-01 17 16705751 16705751 A G CCDC144A 3'UTR 0.24 TCGA-CK-4951-01 17 16735961 16735961 G A KRT16P2 RNA 0.20 TCGA-CK-4951-01 17 16843010 16843010 C T TNFRSF13B Missense_Mutation p.A245T 0.36 tolerated(0.33) benign(0.041) TCGA-CK-4951-01 17 1684701 1684701 T C SMYD4 Missense_Mutation p.Q765R 0.24 tolerated(0.13) benign(0.006) TCGA-CK-4951-01 17 16981334 16981334 C T MPRIP Nonsense_Mutation p.R71* 0.38 TCGA-CK-4951-01 17 17117030 17117030 G A FLCN Missense_Mutation p.T560I 0.32 deleterious(0.04) possibly_damaging(0.791) TCGA-CK-4951-01 17 17696376 17696376 A T RAI1 Silent p.L38L 0.35 TCGA-CK-4951-01 17 17696624 17696624 G - RAI1 Frame_Shift_Del p.A123Pfs*23 0.21 TCGA-CK-4951-01 17 17697546 17697546 G A RAI1 Silent p.S428S 0.27 TCGA-CK-4951-01 17 17701800 17701800 G A RAI1 Silent p.Q1846Q 0.43 TCGA-CK-4951-01 17 17701804 17701804 G A RAI1 Missense_Mutation p.A1848T 0.43 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 17 17722983 17722983 G A SREBF1 Missense_Mutation p.P224S 0.26 tolerated(0.24) benign(0.032) TCGA-CK-4951-01 17 17801942 17801942 G A TOM1L2 Missense_Mutation p.R62W 0.25 deleterious(0) probably_damaging(0.916) TCGA-CK-4951-01 17 18022747 18022747 G C MYO15A Missense_Mutation p.E211D 0.15 probably_damaging(0.942) TCGA-CK-4951-01 17 18023051 18023051 G A MYO15A Missense_Mutation p.E313K 0.32 benign(0.305) TCGA-CK-4951-01 17 18027868 18027868 G A MYO15A Missense_Mutation p.M1227I 0.23 unknown(0) TCGA-CK-4951-01 17 18045547 18045547 G T MYO15A Missense_Mutation p.R1935L 0.22 unknown(0) TCGA-CK-4951-01 17 18111722 18111722 G A ALKBH5 3'UTR 0.34 TCGA-CK-4951-01 17 18148505 18148505 C T FLII Missense_Mutation p.A1253T 0.35 tolerated(0.39) benign(0.129) TCGA-CK-4951-01 17 18219327 18219327 T A SMCR8 Missense_Mutation p.I75N 0.33 deleterious(0) probably_damaging(0.935) TCGA-CK-4951-01 17 18584131 18584131 G A ZNF286B Nonsense_Mutation p.Q17* 0.23 TCGA-CK-4951-01 17 18638576 18638576 G A TRIM16L Missense_Mutation p.D284N 0.25 tolerated(0.21) benign(0.074) TCGA-CK-4951-01 17 18638683 18638683 G A TRIM16L Nonsense_Mutation p.W319* 0.33 TCGA-CK-4951-01 17 18647852 18647852 G A FBXW10 Missense_Mutation p.G99R 0.30 tolerated(0.11) benign(0.036) TCGA-CK-4951-01 17 18682431 18682431 G A FBXW10 Silent p.E993E 0.60 TCGA-CK-4951-01 17 18702218 18702218 G A TVP23B Missense_Mutation p.A142T 0.31 tolerated(0.16) benign(0.022) TCGA-CK-4951-01 17 18881464 18881464 G C FAM83G Silent p.P505P 0.33 TCGA-CK-4951-01 17 18882011 18882011 G A FAM83G Missense_Mutation p.P323L 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-CK-4951-01 17 18925245 18925245 C T GRAP 3'UTR 0.36 TCGA-CK-4951-01 17 19188935 19188935 C T EPN2 Missense_Mutation p.P200S 0.35 tolerated(0.6) benign(0.047) TCGA-CK-4951-01 17 19250383 19250383 C T B9D1 Intron 0.26 TCGA-CK-4951-01 17 19289706 19289706 C T MFAP4 Missense_Mutation p.G77S 0.11 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 19582101 19582101 T C SLC47A2 Silent p.L569L 0.36 TCGA-CK-4951-01 17 19685280 19685280 C T ULK2 Missense_Mutation p.C854Y 0.29 tolerated(0.1) benign(0.012) TCGA-CK-4951-01 17 20135698 20135698 C T SPECC1 Silent p.V777V 0.30 TCGA-CK-4951-01 17 21322917 21322917 C T KCNJ12 3'UTR 0.20 TCGA-CK-4951-01 17 21454695 21454695 C T C17orf51 5'UTR 0.08 TCGA-CK-4951-01 17 2203224 2203224 C A SMG6 Missense_Mutation p.D275Y 0.24 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-CK-4951-01 17 2221185 2221185 G A SRR Missense_Mutation p.V64I 0.25 tolerated(0.45) benign(0.008) TCGA-CK-4951-01 17 2265555 2265555 A T SGSM2 Missense_Mutation p.E150V 0.35 deleterious(0.01) benign(0.019) TCGA-CK-4951-01 17 25904637 25904637 C T KSR1 Silent p.L27L 0.44 TCGA-CK-4951-01 17 2598303 2598303 G A CLUH Silent p.A861A 0.30 TCGA-CK-4951-01 17 2601393 2601393 C T CLUH Silent p.S548S 0.19 TCGA-CK-4951-01 17 2601525 2601525 G A CLUH Silent p.S504S 0.22 TCGA-CK-4951-01 17 2605227 2605227 G A CLUH Silent p.F162F 0.29 TCGA-CK-4951-01 17 26554339 26554339 C T PYY2 RNA 0.57 TCGA-CK-4951-01 17 26554547 26554547 C T PYY2 RNA 0.53 TCGA-CK-4951-01 17 26684816 26684816 G A TMEM199 Silent p.K41K 0.37 TCGA-CK-4951-01 17 26694939 26694939 C T CTB-96E2.2 Missense_Mutation p.R32H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 26695987 26695987 A G VTN Silent p.S244S 0.25 TCGA-CK-4951-01 17 26697259 26697259 G C VTN 5'UTR 0.25 TCGA-CK-4951-01 17 26875022 26875022 T A UNC119 Silent p.G144G 0.56 TCGA-CK-4951-01 17 26881481 26881481 C T PIGS Silent p.S475S 0.42 TCGA-CK-4951-01 17 26898668 26898668 G A PIGS 5'UTR 0.43 TCGA-CK-4951-01 17 26902453 26902453 G A ALDOC Missense_Mutation p.A33V 0.23 deleterious(0.04) probably_damaging(0.935) TCGA-CK-4951-01 17 26910895 26910895 A C RP11-192H23.4 Missense_Mutation p.L246R 0.29 deleterious_low_confidence(0) unknown(0) TCGA-CK-4951-01 17 26912181 26912181 A T SPAG5 Missense_Mutation p.L669H 0.26 deleterious(0) probably_damaging(0.973) TCGA-CK-4951-01 17 26955516 26955516 A T KIAA0100 Nonsense_Mutation p.L1454* 0.28 TCGA-CK-4951-01 17 26962253 26962253 G A KIAA0100 Silent p.N784N 0.25 TCGA-CK-4951-01 17 26962254 26962254 T A KIAA0100 Missense_Mutation p.N784I 0.25 tolerated(0.05) benign(0.013) TCGA-CK-4951-01 17 26988890 26988890 G A SDF2 Missense_Mutation p.A2V 0.18 tolerated(0.35) benign(0) TCGA-CK-4951-01 17 27051593 27051593 G A TLCD1 Missense_Mutation p.R227C 0.50 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 17 27237309 27237309 C T PHF12 Missense_Mutation p.R765Q 0.35 deleterious(0.02) benign(0.062) TCGA-CK-4951-01 17 27286479 27286479 C T SEZ6 Missense_Mutation p.G595R 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 27306710 27306710 G A SEZ6 Silent p.G282G 0.29 TCGA-CK-4951-01 17 27438532 27438532 C A MYO18A Missense_Mutation p.W937L 0.40 tolerated(0.11) probably_damaging(0.997) TCGA-CK-4951-01 17 27493786 27493786 G A MYO18A Missense_Mutation p.T58M 0.35 deleterious_low_confidence(0.03) benign(0.018) TCGA-CK-4951-01 17 27901896 27901896 G A GIT1 Silent p.L713L 0.32 TCGA-CK-4951-01 17 27937742 27937742 C T ANKRD13B Missense_Mutation p.R288W 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 27939460 27939460 C T ANKRD13B Silent p.F433F 0.23 TCGA-CK-4951-01 17 27939466 27939466 C T ANKRD13B Silent p.N435N 0.21 TCGA-CK-4951-01 17 28512692 28512692 A T NSRP1 Nonstop_Mutation p.*559Cext*15 0.30 TCGA-CK-4951-01 17 28530254 28530254 G A SLC6A4 Missense_Mutation p.S585F 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 28652009 28652009 C T TMIGD1 Nonsense_Mutation p.W155* 0.20 TCGA-CK-4951-01 17 28706193 28706193 G T CPD Missense_Mutation p.E65D 0.45 tolerated(0.59) benign(0.057) TCGA-CK-4951-01 17 28706195 28706195 C T CPD Missense_Mutation p.S66L 0.55 tolerated(0.27) benign(0) TCGA-CK-4951-01 17 28712178 28712178 G A CPD Silent p.E306E 0.30 TCGA-CK-4951-01 17 28754499 28754499 C A CPD Missense_Mutation p.P647H 0.28 tolerated(0.06) probably_damaging(0.996) TCGA-CK-4951-01 17 29850978 29850978 G A RAB11FIP4 Missense_Mutation p.S366N 0.39 tolerated(0.15) benign(0.049) TCGA-CK-4951-01 17 3119211 3119211 G A OR1A1 Silent p.T99T 0.35 TCGA-CK-4951-01 17 32908052 32908052 G A TMEM132E 5'UTR 0.29 TCGA-CK-4951-01 17 32964901 32964901 G A TMEM132E Missense_Mutation p.E869K 0.22 deleterious(0.02) probably_damaging(0.962) TCGA-CK-4951-01 17 32964938 32964938 G A TMEM132E Missense_Mutation p.S881N 0.36 tolerated(0.55) probably_damaging(0.997) TCGA-CK-4951-01 17 32965242 32965242 G A TMEM132E Silent p.E982E 0.17 TCGA-CK-4951-01 17 33329767 33329767 G T LIG3 Nonsense_Mutation p.E919* 0.31 TCGA-CK-4951-01 17 33430287 33430288 - A RAD51L3-RFFL Frame_Shift_Ins p.G83Wfs*63 0.22 TCGA-CK-4951-01 17 33433460 33433460 T A RAD51D Missense_Mutation p.D194V 0.34 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 17 33680076 33680076 C T SLFN11 Missense_Mutation p.E669K 0.37 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 33772237 33772237 T A SLFN13 Nonsense_Mutation p.K155* 0.22 TCGA-CK-4951-01 17 33806539 33806539 T A SLFN12L Missense_Mutation p.E230D 0.22 tolerated(0.65) benign(0.061) TCGA-CK-4951-01 17 33807197 33807197 C T SLFN12L Missense_Mutation p.G11E 0.29 tolerated_low_confidence(0.28) possibly_damaging(0.878) TCGA-CK-4951-01 17 33875720 33875720 T C SLFN14 Silent p.P759P 0.37 TCGA-CK-4951-01 17 33884414 33884414 C T SLFN14 Missense_Mutation p.R223Q 0.25 tolerated(0.36) probably_damaging(1) TCGA-CK-4951-01 17 33954715 33954715 G T AP2B1 Silent p.R375R 0.33 TCGA-CK-4951-01 17 34062193 34062193 G A RASL10B 5'UTR 0.42 TCGA-CK-4951-01 17 34062378 34062378 G A RASL10B Missense_Mutation p.D59N 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-CK-4951-01 17 34062396 34062396 G A RASL10B Missense_Mutation p.A65T 0.30 tolerated(0.34) benign(0) TCGA-CK-4951-01 17 34068121 34068121 G A RASL10B Missense_Mutation p.V137M 0.35 tolerated(0.25) possibly_damaging(0.898) TCGA-CK-4951-01 17 34074104 34074104 G A GAS2L2 Missense_Mutation p.S339F 0.27 deleterious(0.03) probably_damaging(0.943) TCGA-CK-4951-01 17 34185529 34185529 C T C17orf66 Missense_Mutation p.A314T 0.33 tolerated(0.06) possibly_damaging(0.804) TCGA-CK-4951-01 17 34249633 34249633 A G RDM1 Silent p.A205A 0.26 TCGA-CK-4951-01 17 34313670 34313670 C T CCL14 Missense_Mutation p.A6T 0.33 deleterious(0.02) benign(0.179) TCGA-CK-4951-01 17 3470027 3470027 G A SHPK 3'UTR 0.24 TCGA-CK-4951-01 17 34842496 34842496 C T ZNHIT3 5'UTR 0.29 TCGA-CK-4951-01 17 34842505 34842505 C T ZNHIT3 5'UTR 0.28 TCGA-CK-4951-01 17 34854359 34854359 T A MYO19 Missense_Mutation p.E836D 0.32 deleterious(0.04) possibly_damaging(0.538) TCGA-CK-4951-01 17 34893597 34893597 G A PIGW Missense_Mutation p.R216Q 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 3527395 3527395 G A SHPK Silent p.L147L 0.27 TCGA-CK-4951-01 17 35298058 35298058 G A LHX1 Silent p.P183P 0.25 TCGA-CK-4951-01 17 3564015 3564015 G A CTNS Missense_Mutation p.S397N 0.31 tolerated_low_confidence(0.26) benign(0.001) TCGA-CK-4951-01 17 35992300 35992300 A G DDX52 Missense_Mutation p.I149T 0.29 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 17 3631306 3631306 G A ITGAE Silent p.N997N 0.33 TCGA-CK-4951-01 17 36453177 36453177 T A MRPL45 Missense_Mutation p.S10T 0.12 tolerated_low_confidence(0.2) benign(0.011) TCGA-CK-4951-01 17 36734899 36734899 C T SRCIN1 Silent p.R56R 0.22 TCGA-CK-4951-01 17 36761972 36761972 G A SRCIN1 5'UTR 0.32 TCGA-CK-4951-01 17 36891721 36891721 G A PCGF2 Missense_Mutation p.P264S 0.32 tolerated(0.96) benign(0.037) TCGA-CK-4951-01 17 36892402 36892402 C T PCGF2 Missense_Mutation p.E200K 0.36 deleterious(0.03) benign(0.017) TCGA-CK-4951-01 17 36909457 36909457 G A PSMB3 Missense_Mutation p.V20M 0.23 deleterious(0.02) benign(0.403) TCGA-CK-4951-01 17 36997539 36997539 T A C17orf98 Missense_Mutation p.K35M 0.27 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 37009658 37009658 C T RPL23 Intron 0.26 TCGA-CK-4951-01 17 37101305 37101305 G A FBXO47 Missense_Mutation p.A234V 0.15 tolerated(0.1) benign(0.091) TCGA-CK-4951-01 17 3721586 3721586 G A C17orf85 Silent p.D427D 0.32 TCGA-CK-4951-01 17 3725290 3725290 T A C17orf85 Missense_Mutation p.N285Y 0.20 deleterious(0.01) possibly_damaging(0.642) TCGA-CK-4951-01 17 37340058 37340058 C T CACNB1 Missense_Mutation p.A320T 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 37343063 37343063 C T CACNB1 Silent p.Q178Q 0.15 TCGA-CK-4951-01 17 37359320 37359320 T A RPL19 Missense_Mutation p.L105Q 0.29 deleterious(0.01) probably_damaging(0.939) TCGA-CK-4951-01 17 37455291 37455291 C T FBXL20 Missense_Mutation p.R94Q 0.33 deleterious(0.01) possibly_damaging(0.684) TCGA-CK-4951-01 17 37459884 37459884 G A FBXL20 Missense_Mutation p.S38F 0.27 deleterious(0) possibly_damaging(0.886) TCGA-CK-4951-01 17 37618434 37618434 G A CDK12 Missense_Mutation p.R37H 0.10 unknown(0) TCGA-CK-4951-01 17 37618490 37618490 G A CDK12 Missense_Mutation p.V56M 0.28 unknown(0) TCGA-CK-4951-01 17 37627719 37627719 C T CDK12 Missense_Mutation p.P545L 0.31 probably_damaging(0.927) TCGA-CK-4951-01 17 37657518 37657518 T A CDK12 Missense_Mutation p.V812E 0.19 probably_damaging(0.999) TCGA-CK-4951-01 17 37676239 37676239 C A CDK12 Missense_Mutation p.D998E 0.14 probably_damaging(0.997) TCGA-CK-4951-01 17 38251870 38251870 G A NR1D1 Missense_Mutation p.R359C 0.44 tolerated(0.1) benign(0.001) TCGA-CK-4951-01 17 38252735 38252735 G A NR1D1 Missense_Mutation p.R189C 0.13 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 38297026 38297026 G A CASC3 Silent p.S75S 0.26 TCGA-CK-4951-01 17 3845979 3845979 C T ATP2A3 Missense_Mutation p.R489Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 17 38569068 38569068 A G TOP2A Silent p.Y244Y 0.26 TCGA-CK-4951-01 17 38572319 38572319 A T TOP2A Silent p.V90V 0.26 TCGA-CK-4951-01 17 38612731 38612731 A G IGFBP4 Missense_Mutation p.K225E 0.27 tolerated(0.1) probably_damaging(0.995) TCGA-CK-4951-01 17 38636978 38636978 G A TNS4 Missense_Mutation p.P572L 0.50 tolerated(0.29) benign(0.003) TCGA-CK-4951-01 17 38906787 38906787 C T KRT25 Silent p.Q340Q 0.31 TCGA-CK-4951-01 17 38992317 38992317 G A TMEM99 3'UTR 0.37 TCGA-CK-4951-01 17 39155659 39155659 T - KRTAP3-2 3'UTR 0.35 TCGA-CK-4951-01 17 39183253 39183253 G A KRTAP1-5 Missense_Mutation p.T52I 0.33 tolerated(0.23) unknown(0) TCGA-CK-4951-01 17 39262258 39262258 C G KRTAP4-9 Silent p.A206A 0.16 TCGA-CK-4951-01 17 39340970 39340970 C T KRTAP4-1 Missense_Mutation p.R46H 0.28 deleterious(0.05) benign(0.028) TCGA-CK-4951-01 17 3945775 3945775 G A ZZEF1 Missense_Mutation p.S2085F 0.08 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 39597030 39597030 G A KRT38 Silent p.N48N 0.25 TCGA-CK-4951-01 17 39623179 39623179 G A KRT32 Silent p.H133H 0.27 TCGA-CK-4951-01 17 39633863 39633863 T A KRT35 Missense_Mutation p.Q376L 0.18 deleterious(0) possibly_damaging(0.52) TCGA-CK-4951-01 17 39681146 39681146 C T KRT19 Silent p.Q203Q 0.35 TCGA-CK-4951-01 17 39768785 39768785 G A KRT16 Silent p.V52V 0.31 TCGA-CK-4951-01 17 39890808 39890808 G A HAP1 Missense_Mutation p.P27S 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-CK-4951-01 17 3989870 3989870 C T ZZEF1 Missense_Mutation p.V808I 0.33 tolerated(0.21) benign(0.017) TCGA-CK-4951-01 17 39912129 39912129 C T JUP Missense_Mutation p.R702H 0.33 tolerated(0.1) benign(0.002) TCGA-CK-4951-01 17 39913780 39913780 C T JUP Missense_Mutation p.A645T 0.28 deleterious(0) benign(0.225) TCGA-CK-4951-01 17 39964255 39964255 C T LEPREL4 Silent p.L306L 0.31 TCGA-CK-4951-01 17 40004325 40004325 G A KLHL10 Silent p.V531V 0.09 TCGA-CK-4951-01 17 40010422 40010422 G A KLHL11 Missense_Mutation p.P566L 0.08 tolerated(0.18) benign(0.035) TCGA-CK-4951-01 17 40010812 40010812 A G KLHL11 Missense_Mutation p.V436A 0.28 deleterious(0.01) possibly_damaging(0.859) TCGA-CK-4951-01 17 40011101 40011101 T A KLHL11 Missense_Mutation p.T340S 0.10 tolerated(0.5) benign(0.005) TCGA-CK-4951-01 17 40021427 40021427 G - KLHL11 Frame_Shift_Del p.P66Qfs*92 0.32 TCGA-CK-4951-01 17 40125649 40125649 C T CNP Missense_Mutation p.R325W 0.31 deleterious(0.02) possibly_damaging(0.729) TCGA-CK-4951-01 17 40179731 40179731 T A ZNF385C Missense_Mutation p.R395W 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 40256793 40256793 G A DHX58 Silent p.Y518Y 0.25 TCGA-CK-4951-01 17 40256794 40256794 T C DHX58 Missense_Mutation p.Y518C 0.25 deleterious(0) probably_damaging(0.954) TCGA-CK-4951-01 17 40318414 40318414 C T KCNH4 Missense_Mutation p.E581K 0.25 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 17 40321613 40321613 C T KCNH4 Missense_Mutation p.R491H 0.33 deleterious(0.04) benign(0.01) TCGA-CK-4951-01 17 40462635 40462635 G A STAT5A Missense_Mutation p.R778H 0.21 tolerated_low_confidence(0.1) benign(0.181) TCGA-CK-4951-01 17 4060187 4060187 C T CYB5D2 Silent p.G202G 0.37 TCGA-CK-4951-01 17 40695571 40695571 C T NAGLU Missense_Mutation p.P516L 0.21 tolerated(0.72) probably_damaging(0.934) TCGA-CK-4951-01 17 40704860 40704860 G A HSD17B1 5'UTR 0.38 TCGA-CK-4951-01 17 40705658 40705658 C T HSD17B1 Intron 0.27 TCGA-CK-4951-01 17 40705729 40705729 T C HSD17B1 Intron 0.22 TCGA-CK-4951-01 17 40717299 40717299 C T COASY Nonsense_Mutation p.R482* 0.37 TCGA-CK-4951-01 17 40720956 40720956 A T MLX Missense_Mutation p.I145F 0.34 deleterious(0) benign(0.346) TCGA-CK-4951-01 17 40817744 40817744 T A TUBG2 Missense_Mutation p.Y248N 0.33 deleterious(0) possibly_damaging(0.524) TCGA-CK-4951-01 17 40817755 40817755 T C TUBG2 Silent p.N251N 0.32 TCGA-CK-4951-01 17 40820278 40820278 G A PLEKHH3 Missense_Mutation p.P750L 0.44 tolerated(0.75) probably_damaging(0.97) TCGA-CK-4951-01 17 40823553 40823553 G A PLEKHH3 Missense_Mutation p.S367L 0.33 deleterious(0) unknown(0) TCGA-CK-4951-01 17 40824228 40824228 G A PLEKHH3 Missense_Mutation p.P318S 0.29 deleterious(0.02) unknown(0) TCGA-CK-4951-01 17 40831714 40831714 G A CCR10 Missense_Mutation p.R316C 0.29 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 17 40831730 40831730 G A CCR10 Silent p.Y310Y 0.33 TCGA-CK-4951-01 17 40831758 40831758 G A CCR10 Missense_Mutation p.A301V 0.16 tolerated(0.84) benign(0.014) TCGA-CK-4951-01 17 40832361 40832361 G A CCR10 Missense_Mutation p.A100V 0.14 tolerated(0.74) benign(0.009) TCGA-CK-4951-01 17 40835923 40835923 G A CNTNAP1 Missense_Mutation p.R51K 0.22 tolerated(0.99) benign(0.184) TCGA-CK-4951-01 17 40837291 40837291 G C CNTNAP1 Missense_Mutation p.G190R 0.15 tolerated(0.09) benign(0.004) TCGA-CK-4951-01 17 40858059 40858059 C T EZH1 Missense_Mutation p.C602Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 17 40872401 40872401 T A EZH1 Missense_Mutation p.Q185L 0.28 tolerated(0.08) benign(0.008) TCGA-CK-4951-01 17 40939817 40939817 A C WNK4 Missense_Mutation p.Y588S 0.42 tolerated(0.13) unknown(0) TCGA-CK-4951-01 17 41020666 41020666 G A AOC4P RNA 0.32 TCGA-CK-4951-01 17 41063062 41063062 T C G6PC Silent p.G231G 0.25 TCGA-CK-4951-01 17 41349082 41349082 C T NBR1 Missense_Mutation p.A662V 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-CK-4951-01 17 41598815 41598815 T C DHX8 Missense_Mutation p.Y1049H 0.34 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 17 41598913 41598913 G A DHX8 Silent p.Q1081Q 0.65 TCGA-CK-4951-01 17 41895442 41895442 C T MPP3 Silent p.P306P 0.23 TCGA-CK-4951-01 17 41926082 41926082 C T CD300LG Missense_Mutation p.A67V 0.25 tolerated(0.24) benign(0.377) TCGA-CK-4951-01 17 42153205 42153205 G A G6PC3 Missense_Mutation p.G279R 0.52 tolerated(0.3) benign(0.043) TCGA-CK-4951-01 17 42155697 42155697 T C HDAC5 3'UTR 0.31 TCGA-CK-4951-01 17 42386203 42386203 G A RUNDC3A Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-CK-4951-01 17 42475153 42475153 G A GPATCH8 Missense_Mutation p.A1431V 0.28 deleterious(0) unknown(0) TCGA-CK-4951-01 17 42475949 42475949 A T GPATCH8 Missense_Mutation p.L1166M 0.33 tolerated(0.1) unknown(0) TCGA-CK-4951-01 17 42636483 42636483 T C FZD2 Missense_Mutation p.V476A 0.40 deleterious(0.01) possibly_damaging(0.85) TCGA-CK-4951-01 17 42988766 42988766 G A GFAP Missense_Mutation p.A322V 0.30 deleterious(0.03) benign(0.041) TCGA-CK-4951-01 17 42992733 42992733 C A GFAP Missense_Mutation p.R41L 0.31 tolerated(0.3) benign(0.011) TCGA-CK-4951-01 17 42992754 42992754 C G GFAP Missense_Mutation p.G34A 0.37 tolerated(0.17) benign(0.009) TCGA-CK-4951-01 17 43044963 43044963 C T C1QL1 Missense_Mutation p.V152I 0.34 tolerated(0.15) benign(0.326) TCGA-CK-4951-01 17 43044992 43044992 C - C1QL1 Frame_Shift_Del p.G142Vfs*14 0.25 TCGA-CK-4951-01 17 43181179 43181179 T C NMT1 Missense_Mutation p.Y423H 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-CK-4951-01 17 43227413 43227413 G A HEXIM1 Missense_Mutation p.E286K 0.53 deleterious(0) probably_damaging(0.975) TCGA-CK-4951-01 17 43228934 43228934 A T HEXIM1 3'UTR 0.26 TCGA-CK-4951-01 17 43333189 43333189 C T SPATA32 Silent p.T120T 0.33 TCGA-CK-4951-01 17 43364317 43364317 T A MAP3K14 RNA 0.36 TCGA-CK-4951-01 17 43472953 43472953 C A ARHGAP27 Missense_Mutation p.A506S 0.34 deleterious(0.02) probably_damaging(0.993) TCGA-CK-4951-01 17 43475410 43475410 G A ARHGAP27 Missense_Mutation p.R242W 0.32 deleterious(0) probably_damaging(0.984) TCGA-CK-4951-01 17 4351527 4351527 G C SPNS3 Missense_Mutation p.E233D 0.34 tolerated(0.3) benign(0.278) TCGA-CK-4951-01 17 44128048 44128048 C T KANSL1 Missense_Mutation p.R624H 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-CK-4951-01 17 4453565 4453565 C T MYBBP1A Silent p.R369R 0.25 TCGA-CK-4951-01 17 4457489 4457489 C T MYBBP1A Splice_Site p.X126_splice 0.31 TCGA-CK-4951-01 17 4458440 4458440 A T MYBBP1A Nonsense_Mutation p.Y60* 0.21 TCGA-CK-4951-01 17 4462052 4462052 G A GGT6 Missense_Mutation p.A247V 0.37 tolerated(0.09) benign(0.355) TCGA-CK-4951-01 17 44627854 44627854 C T LRRC37A2 Missense_Mutation p.T1593M 0.35 tolerated(1) benign(0.006) TCGA-CK-4951-01 17 4463751 4463751 C A GGT6 Silent p.S22S 0.32 TCGA-CK-4951-01 17 44827164 44827164 C T NSF Missense_Mutation p.T645I 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 44846025 44846025 C T WNT3 Silent p.E243E 0.20 TCGA-CK-4951-01 17 44950051 44950051 G A WNT9B Silent p.A82A 0.22 TCGA-CK-4951-01 17 45012402 45012402 A T GOSR2 Missense_Mutation p.D115V 0.21 deleterious(0.01) possibly_damaging(0.481) TCGA-CK-4951-01 17 45266569 45266569 C T CDC27 5'Flank 0.30 TCGA-CK-4951-01 17 45656851 45656851 C T NPEPPS Missense_Mutation p.R172C 0.34 deleterious(0) probably_damaging(0.982) TCGA-CK-4951-01 17 45785878 45785878 G A TBKBP1 Missense_Mutation p.G331S 0.15 tolerated(0.29) probably_damaging(0.977) TCGA-CK-4951-01 17 45811159 45811159 G A TBX21 Silent p.P113P 0.33 TCGA-CK-4951-01 17 45885944 45885944 T A OSBPL7 Missense_Mutation p.M794L 0.13 tolerated(1) probably_damaging(0.974) TCGA-CK-4951-01 17 45993966 45993966 G A SP2 Missense_Mutation p.V177I 0.17 tolerated(0.06) probably_damaging(0.991) TCGA-CK-4951-01 17 46030432 46030432 T A PRR15L Nonsense_Mutation p.K57* 0.12 TCGA-CK-4951-01 17 46030541 46030541 G C PRR15L Silent p.P20P 0.13 TCGA-CK-4951-01 17 46054173 46054173 G A CDK5RAP3 Silent p.P298P 0.25 TCGA-CK-4951-01 17 46058877 46058877 G A CDK5RAP3 3'UTR 0.53 TCGA-CK-4951-01 17 46136633 46136633 C G NFE2L1 Missense_Mutation p.A650G 0.36 tolerated(0.1) benign(0.034) TCGA-CK-4951-01 17 46153516 46153516 T A CBX1 Missense_Mutation p.E55D 0.38 deleterious(0.04) benign(0.06) TCGA-CK-4951-01 17 4635153 4635153 G A MED11 Silent p.V56V 0.31 TCGA-CK-4951-01 17 46474083 46474083 G A SKAP1 Silent p.H37H 0.21 TCGA-CK-4951-01 17 46628156 46628156 A T HOXB3 Nonsense_Mutation p.L279* 0.29 TCGA-CK-4951-01 17 46669813 46669813 T C HOXB5 Missense_Mutation p.T190A 0.31 tolerated(0.52) benign(0.042) TCGA-CK-4951-01 17 46685156 46685156 T A HOXB7 3'UTR 0.40 TCGA-CK-4951-01 17 46688380 46688380 G A HOXB8 3'Flank 0.55 TCGA-CK-4951-01 17 46690546 46690546 G A HOXB8 3'UTR 0.29 TCGA-CK-4951-01 17 46690707 46690707 G A HOXB8 Missense_Mutation p.R197W 0.28 deleterious(0.02) benign(0.06) TCGA-CK-4951-01 17 46690713 46690713 G A HOXB8 Nonsense_Mutation p.Q195* 0.28 TCGA-CK-4951-01 17 46804127 46804127 C T HOXB13 3'UTR 0.19 TCGA-CK-4951-01 17 46804149 46804149 C T HOXB13 3'UTR 0.17 TCGA-CK-4951-01 17 46882222 46882222 C T TTLL6 Missense_Mutation p.A79T 0.46 tolerated(1) benign(0.011) TCGA-CK-4951-01 17 4700733 4700733 G A PSMB6 Silent p.G57G 0.20 TCGA-CK-4951-01 17 4711066 4711066 G A PLD2 Splice_Site 0.53 TCGA-CK-4951-01 17 4722492 4722492 G A PLD2 Missense_Mutation p.D763N 0.27 deleterious(0.02) possibly_damaging(0.872) TCGA-CK-4951-01 17 47302027 47302027 C T PHOSPHO1 Missense_Mutation p.V154M 0.58 deleterious(0.04) benign(0.305) TCGA-CK-4951-01 17 47656351 47656351 C - NXPH3 Frame_Shift_Del p.S152Vfs*4 0.22 TCGA-CK-4951-01 17 4803068 4803068 C - C17orf107 Frame_Shift_Del p.S6Afs*6 0.19 TCGA-CK-4951-01 17 48187457 48187457 G A PDK2 Missense_Mutation p.S407N 0.38 tolerated_low_confidence(0.15) benign(0.093) TCGA-CK-4951-01 17 48216883 48216883 C A PPP1R9B Missense_Mutation p.A642S 0.45 tolerated(0.31) benign(0.171) TCGA-CK-4951-01 17 48226586 48226586 G A PPP1R9B Silent p.C429C 0.28 TCGA-CK-4951-01 17 48247540 48247540 C T SGCA Missense_Mutation p.P262S 0.32 tolerated(0.09) benign(0.103) TCGA-CK-4951-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.40 TCGA-CK-4951-01 17 48435881 48435881 G A XYLT2 Missense_Mutation p.R752H 0.26 tolerated(0.16) benign(0.001) TCGA-CK-4951-01 17 4849217 4849217 T A PFN1 Missense_Mutation p.H134L 0.39 tolerated(0.12) benign(0.184) TCGA-CK-4951-01 17 48543082 48543082 G A CHAD Silent p.L308L 0.25 TCGA-CK-4951-01 17 48560006 48560006 G A RSAD1 Silent p.G281G 0.25 TCGA-CK-4951-01 17 48561096 48561096 G A RSAD1 Missense_Mutation p.R361H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 4860346 4860346 G A ENO3 3'UTR 0.23 TCGA-CK-4951-01 17 48614126 48614126 A T EPN3 Missense_Mutation p.N70I 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 48626745 48626745 G A SPATA20 Silent p.P253P 0.26 TCGA-CK-4951-01 17 48627960 48627960 C T SPATA20 Silent p.L388L 0.28 TCGA-CK-4951-01 17 48649276 48649276 G A CACNA1G Silent p.L208L 0.39 TCGA-CK-4951-01 17 48676861 48676861 A T CACNA1G Missense_Mutation p.N1111Y 0.42 deleterious(0.02) possibly_damaging(0.558) TCGA-CK-4951-01 17 4875807 4875807 G A CAMTA2 Missense_Mutation p.S866L 0.26 deleterious(0.01) benign(0.422) TCGA-CK-4951-01 17 4877730 4877730 C T CAMTA2 Missense_Mutation p.A679T 0.22 tolerated(0.47) benign(0.426) TCGA-CK-4951-01 17 4883322 4883322 G A CAMTA2 Missense_Mutation p.S455L 0.29 tolerated_low_confidence(0.13) benign(0.001) TCGA-CK-4951-01 17 48913471 48913471 C A WFIKKN2 Missense_Mutation p.A58E 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 48917778 48917778 G C WFIKKN2 Missense_Mutation p.A377P 0.12 deleterious(0.01) possibly_damaging(0.88) TCGA-CK-4951-01 17 4905829 4905829 G A KIF1C Missense_Mutation p.R167Q 0.31 deleterious(0) benign(0.041) TCGA-CK-4951-01 17 4923822 4923822 C T KIF1C Missense_Mutation p.R596C 0.20 deleterious(0) possibly_damaging(0.876) TCGA-CK-4951-01 17 49302449 49302449 A T MBTD1 Missense_Mutation p.V25D 0.19 tolerated(0.16) possibly_damaging(0.806) TCGA-CK-4951-01 17 49338096 49338096 C T UTP18 Missense_Mutation p.P51S 0.31 tolerated(0.29) probably_damaging(0.968) TCGA-CK-4951-01 17 4936630 4936630 C - SLC52A1 Frame_Shift_Del p.A354Pfs*3 0.24 TCGA-CK-4951-01 17 5322735 5322735 A T NUP88 Nonsense_Mutation p.L79* 0.26 TCGA-CK-4951-01 17 5371939 5371939 C T DHX33 Missense_Mutation p.G81R 0.30 tolerated(0.45) benign(0.004) TCGA-CK-4951-01 17 5386129 5386129 A G DERL2 Missense_Mutation p.L78P 0.27 deleterious(0.01) probably_damaging(0.972) TCGA-CK-4951-01 17 5392896 5392896 A T MIS12 3'UTR 0.31 TCGA-CK-4951-01 17 5393725 5393725 A T MIS12 3'UTR 0.30 TCGA-CK-4951-01 17 54671747 54671747 G A NOG Missense_Mutation p.D55N 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 17 55335634 55335634 C T MSI2 Silent p.G63G 0.31 TCGA-CK-4951-01 17 55948666 55948666 G A CUEDC1 Silent p.G283G 0.49 TCGA-CK-4951-01 17 55951020 55951020 G A CUEDC1 Missense_Mutation p.P175S 0.62 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 56059254 56059254 C T VEZF1 Missense_Mutation p.E258K 0.31 deleterious(0) possibly_damaging(0.824) TCGA-CK-4951-01 17 56083854 56083854 A T SRSF1 Missense_Mutation p.Y77N 0.37 deleterious(0) probably_damaging(0.949) TCGA-CK-4951-01 17 56164578 56164580 AAG - DYNLL2 In_Frame_Del p.K44del 0.26 TCGA-CK-4951-01 17 56385927 56385927 C T BZRAP1 Missense_Mutation p.G1569D 0.25 deleterious(0.02) possibly_damaging(0.616) TCGA-CK-4951-01 17 56389914 56389914 G C BZRAP1 Silent p.G756G 0.36 TCGA-CK-4951-01 17 56389920 56389920 G C BZRAP1 Missense_Mutation p.S754R 0.38 tolerated(0.08) benign(0.004) TCGA-CK-4951-01 17 56405284 56405284 T C BZRAP1 5'UTR 0.43 TCGA-CK-4951-01 17 56428802 56428802 C T SUPT4H1 Missense_Mutation p.R46Q 0.30 tolerated(0.09) possibly_damaging(0.672) TCGA-CK-4951-01 17 56428826 56428826 G T SUPT4H1 Missense_Mutation p.A38E 0.27 tolerated(1) benign(0.001) TCGA-CK-4951-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.36 TCGA-CK-4951-01 17 56581211 56581211 C T MTMR4 Missense_Mutation p.V569I 0.19 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 17 57290673 57290673 C T SMG8 Missense_Mutation p.A830V 0.62 tolerated(0.12) benign(0.102) TCGA-CK-4951-01 17 57776262 57776262 T C PTRH2 5'UTR 0.32 TCGA-CK-4951-01 17 58040328 58040328 A T RNFT1 Missense_Mutation p.L125Q 0.25 tolerated(0.75) benign(0.001) TCGA-CK-4951-01 17 58127034 58127034 C T HEATR6 Silent p.V818V 0.50 TCGA-CK-4951-01 17 58236805 58236805 G T CA4 3'UTR 0.47 TCGA-CK-4951-01 17 58740623 58740624 - A PPM1D Frame_Shift_Ins p.N512Kfs*16 0.63 TCGA-CK-4951-01 17 59469352 59469352 G A BCAS3 Missense_Mutation p.G885R 0.71 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-CK-4951-01 17 59482898 59482898 G A TBX2 Missense_Mutation p.G463R 0.27 deleterious(0.04) possibly_damaging(0.794) TCGA-CK-4951-01 17 59560446 59560446 G A TBX4 Missense_Mutation p.G403R 0.79 deleterious_low_confidence(0.01) possibly_damaging(0.893) TCGA-CK-4951-01 17 6019 6019 G A DOC2B Silent p.Y305Y 0.27 TCGA-CK-4951-01 17 60689901 60689901 C T TLK2 Missense_Mutation p.A743V 0.45 tolerated_low_confidence(0.62) benign(0.021) TCGA-CK-4951-01 17 60751504 60751504 C T MRC2 Silent p.A514A 0.74 TCGA-CK-4951-01 17 60753803 60753803 C T MRC2 Missense_Mutation p.T582M 0.68 deleterious(0.03) probably_damaging(0.986) TCGA-CK-4951-01 17 61497963 61497963 T A TANC2 Silent p.P1540P 0.28 TCGA-CK-4951-01 17 61568715 61568715 G A ACE Nonsense_Mutation p.W962* 0.57 TCGA-CK-4951-01 17 61623036 61623036 C T KCNH6 Missense_Mutation p.H920Y 0.38 deleterious_low_confidence(0) benign(0.105) TCGA-CK-4951-01 17 61864605 61864605 C T DDX42 Missense_Mutation p.R66W 0.28 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 17 62022786 62022786 G A SCN4A Silent p.V1218V 0.37 TCGA-CK-4951-01 17 62080994 62080994 C - C17orf72 3'Flank 0.28 TCGA-CK-4951-01 17 62515508 62515508 C A CEP95 Silent p.I181I 0.32 TCGA-CK-4951-01 17 6329931 6329931 G A AIPL1 Intron 0.25 TCGA-CK-4951-01 17 6350857 6350857 A G FAM64A Silent p.R123R 0.26 TCGA-CK-4951-01 17 63554640 63554640 G A AXIN2 Silent p.T33T 0.20 TCGA-CK-4951-01 17 6358624 6358624 C - PITPNM3 3'UTR 0.25 TCGA-CK-4951-01 17 6358906 6358906 G A PITPNM3 Missense_Mutation p.R893C 0.42 deleterious(0) probably_damaging(0.985) TCGA-CK-4951-01 17 64049901 64049901 G A CEP112 Missense_Mutation p.R391C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 17 648416 648416 G A GEMIN4 Missense_Mutation p.A956V 0.25 tolerated(0.29) benign(0.001) TCGA-CK-4951-01 17 649643 649643 G A GEMIN4 Missense_Mutation p.A547V 0.20 deleterious(0.02) benign(0.318) TCGA-CK-4951-01 17 65144760 65144760 T A HELZ Missense_Mutation p.Y849F 0.29 tolerated(0.47) possibly_damaging(0.499) TCGA-CK-4951-01 17 66033315 66033315 G A KPNA2 Missense_Mutation p.D23N 0.30 tolerated(0.08) probably_damaging(0.976) TCGA-CK-4951-01 17 66039108 66039108 C A KPNA2 Missense_Mutation p.S220Y 0.26 deleterious(0.02) possibly_damaging(0.774) TCGA-CK-4951-01 17 66416342 66416342 C T ARSG Missense_Mutation p.A439V 0.36 tolerated(0.06) probably_damaging(0.982) TCGA-CK-4951-01 17 66453565 66453565 G A WIPI1 5'Flank 0.29 TCGA-CK-4951-01 17 66925198 66925198 T A ABCA8 Missense_Mutation p.M373L 0.20 tolerated(0.18) benign(0.12) TCGA-CK-4951-01 17 67286027 67286027 T C ABCA5 Missense_Mutation p.I586M 0.35 deleterious(0) probably_damaging(0.938) TCGA-CK-4951-01 17 68173046 68173046 C T KCNJ2 3'UTR 0.48 TCGA-CK-4951-01 17 68173949 68173949 A G KCNJ2 3'UTR 0.35 TCGA-CK-4951-01 17 68174799 68174799 G - KCNJ2 3'UTR 0.67 TCGA-CK-4951-01 17 68175889 68175889 C T KCNJ2 3'UTR 0.30 TCGA-CK-4951-01 17 686360 686360 G A RNMTL1 Missense_Mutation p.E118K 0.29 deleterious(0.01) possibly_damaging(0.721) TCGA-CK-4951-01 17 6900159 6900159 T C ALOX12 Silent p.D50D 0.36 TCGA-CK-4951-01 17 6904765 6904765 G A AC027763.2 Intron 0.64 TCGA-CK-4951-01 17 6905100 6905100 G A ALOX12 Silent p.R377R 0.35 TCGA-CK-4951-01 17 6921342 6921342 G A RNASEK 3'Flank 0.19 TCGA-CK-4951-01 17 6941568 6941568 C T SLC16A13 Silent p.G147G 0.19 TCGA-CK-4951-01 17 6941951 6941951 C G SLC16A13 Missense_Mutation p.A275G 0.38 tolerated(0.12) benign(0.175) TCGA-CK-4951-01 17 694931 694931 G C RNMTL1 Missense_Mutation p.Q295H 0.23 tolerated(0.09) possibly_damaging(0.895) TCGA-CK-4951-01 17 71282716 71282716 G A CDC42EP4 5'UTR 0.60 TCGA-CK-4951-01 17 7132474 7132474 G A DVL2 Missense_Mutation p.P313S 0.31 deleterious(0.02) possibly_damaging(0.679) TCGA-CK-4951-01 17 71380124 71380124 G A SDK2 Silent p.G1532G 0.67 TCGA-CK-4951-01 17 7154609 7154609 G A CTDNEP1 Missense_Mutation p.R3W 0.35 tolerated_low_confidence(0.12) benign(0.316) TCGA-CK-4951-01 17 7187366 7187366 G A SLC2A4 Silent p.T174T 0.39 TCGA-CK-4951-01 17 7187828 7187828 C T SLC2A4 Missense_Mutation p.A251V 0.31 tolerated(0.66) benign(0.216) TCGA-CK-4951-01 17 7189899 7189899 T C SLC2A4 Missense_Mutation p.V494A 0.25 tolerated(0.87) benign(0.037) TCGA-CK-4951-01 17 7221464 7221464 G C NEURL4 Missense_Mutation p.P1327R 0.30 tolerated(0.06) possibly_damaging(0.862) TCGA-CK-4951-01 17 7228759 7228759 T A NEURL4 Missense_Mutation p.Y467F 0.57 tolerated(0.15) probably_damaging(0.985) TCGA-CK-4951-01 17 7230107 7230107 G A NEURL4 Missense_Mutation p.R339C 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 7230201 7230201 G A NEURL4 Silent p.A307A 0.31 TCGA-CK-4951-01 17 72351016 72351016 C T KIF19 Silent p.I934I 0.38 TCGA-CK-4951-01 17 72351034 72351034 C T KIF19 Silent p.V940V 0.42 TCGA-CK-4951-01 17 7256360 7256360 C T KCTD11 Silent p.F33F 0.31 TCGA-CK-4951-01 17 72759505 72759505 G A SLC9A3R1 Splice_Site p.X202_splice 0.26 TCGA-CK-4951-01 17 72764657 72764657 T A SLC9A3R1 Silent p.S313S 0.23 TCGA-CK-4951-01 17 72832408 72832408 G A TMEM104 Missense_Mutation p.G358D 0.32 deleterious(0) benign(0.219) TCGA-CK-4951-01 17 72832414 72832414 T A TMEM104 Missense_Mutation p.F360Y 0.29 deleterious(0.03) possibly_damaging(0.649) TCGA-CK-4951-01 17 72832842 72832842 G A TMEM104 3'UTR 0.31 TCGA-CK-4951-01 17 72838682 72838682 G A GRIN2C Silent p.Y1198Y 0.28 TCGA-CK-4951-01 17 72919089 72919089 G A USH1G Missense_Mutation p.A27V 0.44 deleterious(0.02) possibly_damaging(0.498) TCGA-CK-4951-01 17 72926696 72926696 G A OTOP2 Silent p.R322R 0.29 TCGA-CK-4951-01 17 72958021 72958021 C T HID1 Silent p.P225P 0.35 TCGA-CK-4951-01 17 7311693 7311693 G A NLGN2 Missense_Mutation p.R40H 0.28 tolerated_low_confidence(0.48) benign(0.291) TCGA-CK-4951-01 17 73127171 73127171 A G NT5C Missense_Mutation p.L102P 0.30 deleterious(0.01) benign(0.153) TCGA-CK-4951-01 17 73222187 73222187 A G NUP85 Silent p.E343E 0.33 TCGA-CK-4951-01 17 7348417 7348417 G A CHRNB1 5'UTR 0.28 TCGA-CK-4951-01 17 73488759 73488759 C T KIAA0195 Missense_Mutation p.R601C 0.33 deleterious(0) possibly_damaging(0.836) TCGA-CK-4951-01 17 73503695 73503695 G A CASKIN2 Nonsense_Mutation p.Q72* 0.29 TCGA-CK-4951-01 17 73515080 73515080 T A TSEN54 Missense_Mutation p.F158Y 0.14 tolerated(0.16) possibly_damaging(0.545) TCGA-CK-4951-01 17 73566511 73566511 T C LLGL2 Missense_Mutation p.S653P 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 17 73569230 73569230 G A LLGL2 Missense_Mutation p.V866I 0.76 tolerated(0.06) benign(0.014) TCGA-CK-4951-01 17 7358773 7358773 T A CHRNB1 Missense_Mutation p.N405K 0.31 deleterious(0.03) benign(0.133) TCGA-CK-4951-01 17 7365692 7365692 G A ZBTB4 Missense_Mutation p.P870L 0.25 benign(0.038) TCGA-CK-4951-01 17 7365703 7365703 G A ZBTB4 Silent p.S866S 0.27 TCGA-CK-4951-01 17 73663452 73663452 G A SAP30BP 5'UTR 0.26 TCGA-CK-4951-01 17 73726363 73726363 C T ITGB4 Silent p.V260V 0.23 TCGA-CK-4951-01 17 73775134 73775134 C T H3F3B Missense_Mutation p.R41H 0.26 tolerated_low_confidence(0.09) benign(0.001) TCGA-CK-4951-01 17 73808332 73808332 G A UNK Missense_Mutation p.G152R 0.29 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 17 73832174 73832174 C T UNC13D Missense_Mutation p.G488D 0.65 tolerated(0.08) possibly_damaging(0.739) TCGA-CK-4951-01 17 73870658 73870658 C T TRIM47 Missense_Mutation p.R608K 0.30 tolerated_low_confidence(0.65) benign(0.006) TCGA-CK-4951-01 17 73874597 73874597 G A TRIM47 Silent p.I11I 0.79 TCGA-CK-4951-01 17 74013943 74013943 T C EVPL Silent p.T529T 0.34 TCGA-CK-4951-01 17 74036983 74036983 C T SRP68 Splice_Site p.X534_splice 0.26 TCGA-CK-4951-01 17 7407026 7407026 C T POLR2A Silent p.R1052R 0.26 TCGA-CK-4951-01 17 7412382 7412382 C G POLR2A Silent p.V1195V 0.34 TCGA-CK-4951-01 17 7412907 7412907 C T POLR2A Missense_Mutation p.L1257F 0.40 benign(0.261) TCGA-CK-4951-01 17 74133727 74133727 C T FOXJ1 Missense_Mutation p.G325S 0.36 tolerated(1) benign(0) TCGA-CK-4951-01 17 74133731 74133731 C T FOXJ1 Silent p.E323E 0.38 TCGA-CK-4951-01 17 74136102 74136102 C T FOXJ1 Silent p.S125S 0.27 TCGA-CK-4951-01 17 74382390 74382390 G A SPHK1 Missense_Mutation p.M170I 0.15 tolerated(0.24) benign(0.001) TCGA-CK-4951-01 17 74392429 74392429 G A UBE2O Silent p.N863N 0.30 TCGA-CK-4951-01 17 74395004 74395004 C T UBE2O Missense_Mutation p.C566Y 0.81 tolerated(1) benign(0.135) TCGA-CK-4951-01 17 74469368 74469368 C T RHBDF2 Missense_Mutation p.G621D 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 74527640 74527640 C T CYGB Missense_Mutation p.V93M 0.36 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 17 74533547 74533547 C G CYGB Silent p.A26A 0.27 TCGA-CK-4951-01 17 74569344 74569344 C T ST6GALNAC2 Missense_Mutation p.G155S 0.33 probably_damaging(0.982) TCGA-CK-4951-01 17 74569350 74569350 C T ST6GALNAC2 Missense_Mutation p.V153M 0.35 probably_damaging(0.998) TCGA-CK-4951-01 17 7492667 7492667 G A SOX15 Silent p.L110L 0.26 TCGA-CK-4951-01 17 7497587 7497587 C T FXR2 Missense_Mutation p.G330D 0.38 deleterious(0.01) probably_damaging(0.958) TCGA-CK-4951-01 17 75209520 75209520 C T SEC14L1 Missense_Mutation p.S663L 0.36 tolerated(0.17) benign(0.009) TCGA-CK-4951-01 17 75209536 75209536 G A SEC14L1 Silent p.V668V 0.33 TCGA-CK-4951-01 17 75316356 75316356 C T SEPT9 Intron 0.39 TCGA-CK-4951-01 17 7574030 7574030 G A TP53 Missense_Mutation p.R333C 0.20 deleterious(0) probably_damaging(0.971) TCGA-CK-4951-01 17 76121297 76121297 G A TMC6 Nonsense_Mutation p.Q160* 0.32 TCGA-CK-4951-01 17 76128489 76128489 G A TMC8 Silent p.L116L 0.31 TCGA-CK-4951-01 17 76136981 76136981 G A TMC8 Missense_Mutation p.D657N 0.21 tolerated(0.38) benign(0.124) TCGA-CK-4951-01 17 76136988 76136988 C T TMC8 Missense_Mutation p.P659L 0.35 tolerated(0.94) benign(0) TCGA-CK-4951-01 17 76162071 76162071 G - C17orf99 Frame_Shift_Del p.F250Sfs*3 0.35 TCGA-CK-4951-01 17 76210392 76210392 G A BIRC5 5'UTR 0.24 TCGA-CK-4951-01 17 76212116 76212116 G A BIRC5 Splice_Site p.X97_splice 0.30 TCGA-CK-4951-01 17 76227852 76227852 G A TMEM235 5'Flank 0.84 TCGA-CK-4951-01 17 76388734 76388734 C - PGS1 Frame_Shift_Del p.F107Lfs*4 0.30 TCGA-CK-4951-01 17 76437132 76437132 C T DNAH17 Splice_Site p.X3879_splice 0.24 TCGA-CK-4951-01 17 76449444 76449444 T A DNAH17 Missense_Mutation p.N3490Y 0.43 benign(0.112) TCGA-CK-4951-01 17 76462758 76462758 C T DNAH17 Silent p.L2959L 0.32 TCGA-CK-4951-01 17 76464896 76464896 A T DNAH17 Missense_Mutation p.S2847T 0.22 benign(0.109) TCGA-CK-4951-01 17 76490156 76490156 C T DNAH17 Missense_Mutation p.V2110M 0.24 possibly_damaging(0.79) TCGA-CK-4951-01 17 76503703 76503703 C T DNAH17 Missense_Mutation p.S1470N 0.37 benign(0.063) TCGA-CK-4951-01 17 76972201 76972201 G A LGALS3BP Silent p.G30G 0.22 TCGA-CK-4951-01 17 77040155 77040155 G A C1QTNF1 Silent p.Q35Q 0.62 TCGA-CK-4951-01 17 77043855 77043855 C G C1QTNF1 Missense_Mutation p.H177Q 0.28 deleterious(0.05) benign(0.444) TCGA-CK-4951-01 17 77079888 77079888 C T ENGASE Nonsense_Mutation p.Q433* 0.38 TCGA-CK-4951-01 17 77758344 77758344 G A CBX2 Missense_Mutation p.V368M 0.24 tolerated(0.24) benign(0.005) TCGA-CK-4951-01 17 77758628 77758628 G T CBX2 Missense_Mutation p.E462D 0.33 tolerated(0.13) possibly_damaging(0.817) TCGA-CK-4951-01 17 77768945 77768945 G A CBX8 Missense_Mutation p.A220V 0.29 tolerated(0.11) benign(0) TCGA-CK-4951-01 17 77808004 77808004 C T CBX4 Silent p.K479K 0.41 TCGA-CK-4951-01 17 77914763 77914763 C T TBC1D16 Silent p.E733E 0.32 TCGA-CK-4951-01 17 77926520 77926520 C T TBC1D16 Missense_Mutation p.E293K 0.38 tolerated(0.12) probably_damaging(0.998) TCGA-CK-4951-01 17 78061483 78061483 C T CCDC40 Missense_Mutation p.L843F 0.56 deleterious(0.02) probably_damaging(0.919) TCGA-CK-4951-01 17 78187622 78187622 G T SGSH Silent p.T242T 0.29 TCGA-CK-4951-01 17 7826410 7826410 C A KCNAB3 3'UTR 0.35 TCGA-CK-4951-01 17 78272147 78272147 G A RNF213 Missense_Mutation p.C680Y 0.29 benign(0.057) TCGA-CK-4951-01 17 78327712 78327712 G A RNF213 Intron 0.67 TCGA-CK-4951-01 17 7835229 7835229 C T TRAPPC1 5'UTR 0.42 TCGA-CK-4951-01 17 7851948 7851948 G A CNTROB Missense_Mutation p.G842R 0.31 deleterious_low_confidence(0.03) benign(0.081) TCGA-CK-4951-01 17 78882690 78882690 G A RPTOR Silent p.S827S 0.63 TCGA-CK-4951-01 17 7907370 7907370 G A GUCY2D Missense_Mutation p.V308M 0.32 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 17 79089661 79089661 C T BAIAP2 Intron 0.46 TCGA-CK-4951-01 17 79095702 79095702 C T AATK Nonsense_Mutation p.W678* 0.26 TCGA-CK-4951-01 17 79164860 79164860 G A AZI1 Silent p.Y930Y 0.27 TCGA-CK-4951-01 17 7918235 7918235 G A GUCY2D Missense_Mutation p.V879M 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 79226312 79226312 G A SLC38A10 Missense_Mutation p.P543L 0.32 tolerated(0.27) benign(0.02) TCGA-CK-4951-01 17 79410089 79410089 G C RP11-1055B8.7 Missense_Mutation p.A572P 0.17 probably_damaging(0.998) TCGA-CK-4951-01 17 79412043 79412043 G A RP11-1055B8.7 Missense_Mutation p.D892N 0.23 possibly_damaging(0.548) TCGA-CK-4951-01 17 79423474 79423474 G A RP11-1055B8.7 Missense_Mutation p.R1574H 0.29 probably_damaging(0.923) TCGA-CK-4951-01 17 79423578 79423578 G A RP11-1055B8.7 Missense_Mutation p.A1609T 0.22 benign(0.038) TCGA-CK-4951-01 17 79428465 79428465 G T RP11-1055B8.7 Missense_Mutation p.R2259L 0.29 probably_damaging(0.997) TCGA-CK-4951-01 17 79428615 79428615 G C RP11-1055B8.7 Missense_Mutation p.R2309P 0.19 probably_damaging(0.916) TCGA-CK-4951-01 17 79478635 79478635 G A ACTG1 Silent p.F127F 0.22 TCGA-CK-4951-01 17 79652704 79652704 G A HGS Missense_Mutation p.R36H 0.74 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 17 79667580 79667580 G A HGS Missense_Mutation p.A656T 0.61 tolerated(0.97) benign(0.001) TCGA-CK-4951-01 17 79671340 79671340 C T SLC25A10 Silent p.A47A 0.18 TCGA-CK-4951-01 17 79684056 79684056 G A SLC25A10 Missense_Mutation p.G163D 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 79804410 79804410 G A P4HB Silent p.L317L 0.31 TCGA-CK-4951-01 17 79826913 79826913 G A ARHGDIA Missense_Mutation p.R152W 0.38 deleterious(0) probably_damaging(0.974) TCGA-CK-4951-01 17 7983471 7983471 C T AC129492.6 Missense_Mutation p.T51I 0.22 benign(0.004) TCGA-CK-4951-01 17 79845947 79845947 C A ALYREF 3'UTR 0.61 TCGA-CK-4951-01 17 79857158 79857158 G A ANAPC11 Nonsense_Mutation p.W50* 0.13 TCGA-CK-4951-01 17 79892220 79892220 G A PYCR1 Missense_Mutation p.A260V 0.44 tolerated(0.08) benign(0.441) TCGA-CK-4951-01 17 79892951 79892951 C T PYCR1 Missense_Mutation p.G131R 0.44 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 79892964 79892964 G A PYCR1 Silent p.V126V 0.14 TCGA-CK-4951-01 17 7990852 7990852 C T ALOX12B 5'UTR 0.22 TCGA-CK-4951-01 17 79981596 79981596 A C LRRC45 Missense_Mutation p.Q26P 0.39 deleterious(0.01) possibly_damaging(0.556) TCGA-CK-4951-01 17 79991464 79991464 C G RAC3 Missense_Mutation p.A146G 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.656) TCGA-CK-4951-01 17 80047188 80047188 T A FASN Missense_Mutation p.M680L 0.27 tolerated(0.1) benign(0.001) TCGA-CK-4951-01 17 80050630 80050630 C T FASN Silent p.S279S 0.59 TCGA-CK-4951-01 17 80211013 80211013 G A CSNK1D Silent p.I148I 0.57 TCGA-CK-4951-01 17 8025741 8025741 C T HES7 Missense_Mutation p.R49Q 0.30 tolerated(0.5) probably_damaging(0.947) TCGA-CK-4951-01 17 80273283 80273283 C T CD7 Missense_Mutation p.D213N 0.22 tolerated(0.07) benign(0.005) TCGA-CK-4951-01 17 8027397 8027397 G A HES7 Silent p.V2V 0.40 TCGA-CK-4951-01 17 80320036 80320036 C T TEX19 Missense_Mutation p.P4S 0.29 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 17 80332635 80332635 C T UTS2R Silent p.S145S 0.45 TCGA-CK-4951-01 17 8049988 8049988 C T PER1 Missense_Mutation p.V611I 0.33 tolerated(0.4) benign(0.001) TCGA-CK-4951-01 17 8050036 8050036 G T PER1 Missense_Mutation p.P595T 0.46 tolerated(0.12) benign(0.027) TCGA-CK-4951-01 17 80543811 80543811 C T FOXK2 Silent p.I437I 0.26 TCGA-CK-4951-01 17 8093081 8093081 G A C17orf59 Silent p.C126C 0.44 TCGA-CK-4951-01 17 8109903 8109903 G A AURKB Missense_Mutation p.H198Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 17 8131610 8131610 C T CTC1 Missense_Mutation p.C1181Y 0.30 deleterious(0.03) benign(0.046) TCGA-CK-4951-01 17 8131851 8131851 C T CTC1 Missense_Mutation p.E1162K 0.34 tolerated(0.07) benign(0.133) TCGA-CK-4951-01 17 8131852 8131852 C T CTC1 Silent p.L1161L 0.35 TCGA-CK-4951-01 17 8133733 8133733 C T CTC1 Missense_Mutation p.A938T 0.29 tolerated(0.09) benign(0.053) TCGA-CK-4951-01 17 8157567 8157567 G A PFAS Missense_Mutation p.E76K 0.31 tolerated(0.54) benign(0.002) TCGA-CK-4951-01 17 8158392 8158392 G A PFAS Missense_Mutation p.R109H 0.14 tolerated(0.65) benign(0) TCGA-CK-4951-01 17 8159136 8159136 C T PFAS Silent p.D196D 0.30 TCGA-CK-4951-01 17 8166584 8166584 G T PFAS Splice_Site p.X523_splice 0.50 TCGA-CK-4951-01 17 8167167 8167167 G T PFAS Missense_Mutation p.R568S 0.15 tolerated(0.16) benign(0.043) TCGA-CK-4951-01 17 8170196 8170196 G A PFAS Missense_Mutation p.E983K 0.38 tolerated(1) benign(0.01) TCGA-CK-4951-01 17 8170198 8170198 G A PFAS Silent p.E983E 0.33 TCGA-CK-4951-01 17 8170948 8170948 G A PFAS Missense_Mutation p.G1116D 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 17 8273296 8273296 A T KRBA2 Missense_Mutation p.M212K 0.28 deleterious(0) possibly_damaging(0.704) TCGA-CK-4951-01 17 8413205 8413205 C T MYH10 Silent p.V1005V 0.28 TCGA-CK-4951-01 17 8644878 8644878 G A CCDC42 Missense_Mutation p.R136W 0.29 deleterious(0) possibly_damaging(0.817) TCGA-CK-4951-01 17 8700910 8700910 A G MFSD6L Missense_Mutation p.V510A 0.30 tolerated(0.83) benign(0.035) TCGA-CK-4951-01 17 8740151 8740151 G T PIK3R6 Silent p.A116A 0.28 TCGA-CK-4951-01 17 8792498 8792498 C T PIK3R5 Missense_Mutation p.V285I 0.25 tolerated(0.15) possibly_damaging(0.628) TCGA-CK-4951-01 17 9408447 9408447 C T STX8 Missense_Mutation p.G119E 0.21 tolerated(0.07) possibly_damaging(0.886) TCGA-CK-4951-01 17 9757851 9757851 T C GLP2R Missense_Mutation p.Y182H 0.28 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 18 11853569 11853569 T A CHMP1B 3'UTR 0.32 TCGA-CK-4951-01 18 12325562 12325562 G T TUBB6 Silent p.V258V 0.25 TCGA-CK-4951-01 18 12429394 12429394 G A SLMO1 Missense_Mutation p.V171M 0.47 deleterious(0.01) benign(0.097) TCGA-CK-4951-01 18 13056137 13056137 C T CEP192 Missense_Mutation p.T1183I 0.38 tolerated(0.7) benign(0.003) TCGA-CK-4951-01 18 13124647 13124647 A G CEP192 Missense_Mutation p.N2498D 0.25 deleterious(0.01) possibly_damaging(0.828) TCGA-CK-4951-01 18 13825943 13825943 C G MC5R Missense_Mutation p.A60G 0.29 deleterious(0.01) possibly_damaging(0.755) TCGA-CK-4951-01 18 19057157 19057157 C A GREB1L Missense_Mutation p.P799H 0.33 deleterious(0) probably_damaging(0.956) TCGA-CK-4951-01 18 19995721 19995721 C T CTAGE1 Missense_Mutation p.G685E 0.24 deleterious(0.03) probably_damaging(1) TCGA-CK-4951-01 18 20596843 20596843 G A RBBP8 Missense_Mutation p.E804K 0.33 deleterious(0.03) possibly_damaging(0.805) TCGA-CK-4951-01 18 20768860 20768860 G A CABLES1 Missense_Mutation p.A302T 0.44 deleterious_low_confidence(0.01) probably_damaging(0.909) TCGA-CK-4951-01 18 21099046 21099046 A - C18orf8 Frame_Shift_Del p.K254Rfs*5 0.23 TCGA-CK-4951-01 18 21353534 21353534 C - LAMA3 Frame_Shift_Del p.P420Lfs*49 0.24 TCGA-CK-4951-01 18 21355816 21355816 G A LAMA3 Missense_Mutation p.C445Y 0.28 probably_damaging(1) TCGA-CK-4951-01 18 21357542 21357542 C A LAMA3 Missense_Mutation p.S476Y 0.21 benign(0.009) TCGA-CK-4951-01 18 21511082 21511082 T A LAMA3 Missense_Mutation p.D2831E 0.25 benign(0.042) TCGA-CK-4951-01 18 21708868 21708868 A G TTC39C Missense_Mutation p.D480G 0.28 deleterious(0.01) benign(0.104) TCGA-CK-4951-01 18 22807300 22807300 C T ZNF521 Silent p.K194K 0.11 TCGA-CK-4951-01 18 23713861 23713861 C T PSMA8 5'UTR 0.48 TCGA-CK-4951-01 18 23854993 23854993 G A TAF4B Silent p.V286V 0.30 TCGA-CK-4951-01 18 24127343 24127343 G C KCTD1 Intron 0.24 TCGA-CK-4951-01 18 24127707 24127707 G A KCTD1 Intron 0.44 TCGA-CK-4951-01 18 2920272 2920272 C T LPIN2 3'UTR 0.32 TCGA-CK-4951-01 18 29437830 29437830 C T TRAPPC8 Missense_Mutation p.R954H 0.31 tolerated(1) benign(0) TCGA-CK-4951-01 18 30260447 30260447 G A KLHL14 Missense_Mutation p.R452C 0.30 deleterious(0.04) possibly_damaging(0.465) TCGA-CK-4951-01 18 30804850 30804850 A G CCDC178 Silent p.L569L 0.14 TCGA-CK-4951-01 18 3134649 3134649 G A MYOM1 Nonsense_Mutation p.R795* 0.42 TCGA-CK-4951-01 18 32825387 32825387 G T ZNF397 Missense_Mutation p.G240W 0.20 deleterious(0.01) possibly_damaging(0.599) TCGA-CK-4951-01 18 33877773 33877773 C T FHOD3 5'UTR 0.11 TCGA-CK-4951-01 18 34297824 34297824 G A FHOD3 Missense_Mutation p.G680S 0.29 tolerated(0.2) benign(0.144) TCGA-CK-4951-01 18 3447618 3447618 G - TGIF1 5'Flank 0.22 TCGA-CK-4951-01 18 43493740 43493740 G A EPG5 Silent p.S1249S 0.31 TCGA-CK-4951-01 18 44036643 44036643 C T RNF165 3'UTR 0.28 TCGA-CK-4951-01 18 44561057 44561057 G A TCEB3B Silent p.P193P 0.30 TCGA-CK-4951-01 18 44662776 44662776 A G HDHD2 Missense_Mutation p.V12A 0.33 deleterious(0) possibly_damaging(0.777) TCGA-CK-4951-01 18 46645176 46645176 C T DYM Missense_Mutation p.D562N 0.29 tolerated(0.21) possibly_damaging(0.588) TCGA-CK-4951-01 18 47812437 47812437 C T CXXC1 Silent p.S138S 0.22 TCGA-CK-4951-01 18 51731413 51731413 C T MBD2 Silent p.Q219Q 0.20 TCGA-CK-4951-01 18 5397137 5397137 C A EPB41L3 Missense_Mutation p.A921S 0.26 tolerated(0.34) benign(0.106) TCGA-CK-4951-01 18 5416314 5416314 A T EPB41L3 Missense_Mutation p.S524T 0.31 tolerated(0.14) benign(0.01) TCGA-CK-4951-01 18 55103686 55103686 G A ONECUT2 Silent p.L246L 0.13 TCGA-CK-4951-01 18 55103706 55103706 G T ONECUT2 Missense_Mutation p.G253V 0.36 deleterious(0.01) benign(0.003) TCGA-CK-4951-01 18 55317639 55317639 C T ATP8B1 Missense_Mutation p.R1164Q 0.26 tolerated(0.19) benign(0.029) TCGA-CK-4951-01 18 59854922 59854922 G T KIAA1468 Missense_Mutation p.A62S 0.41 tolerated_low_confidence(0.16) benign(0.124) TCGA-CK-4951-01 18 59855226 59855226 G A KIAA1468 Missense_Mutation p.G163D 0.35 tolerated_low_confidence(0.18) benign(0.156) TCGA-CK-4951-01 18 60212098 60212098 C T ZCCHC2 Silent p.L398L 0.11 TCGA-CK-4951-01 18 60241833 60241833 G A ZCCHC2 Missense_Mutation p.S840N 0.30 tolerated(0.14) benign(0.004) TCGA-CK-4951-01 18 60242292 60242292 G T ZCCHC2 Missense_Mutation p.G993V 0.23 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 18 60243759 60243759 A T ZCCHC2 Nonsense_Mutation p.R1162* 0.29 TCGA-CK-4951-01 18 61089510 61089510 G A VPS4B 5'UTR 0.25 TCGA-CK-4951-01 18 61582820 61582820 A - SERPINB10 Frame_Shift_Del p.N27Ifs*13 0.23 TCGA-CK-4951-01 18 64211241 64211241 G A CDH19 Missense_Mutation p.A394V 0.22 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 18 65179237 65179237 T C DSEL Missense_Mutation p.Q880R 0.34 tolerated(0.19) possibly_damaging(0.648) TCGA-CK-4951-01 18 66365166 66365166 T A TMX3 Intron 0.19 TCGA-CK-4951-01 18 66504389 66504389 C T CCDC102B Missense_Mutation p.A130V 0.32 tolerated(0.86) benign(0.331) TCGA-CK-4951-01 18 67871486 67871486 A G RTTN Missense_Mutation p.V78A 0.29 tolerated(1) benign(0.019) TCGA-CK-4951-01 18 73001036 73001036 A G TSHZ1 3'UTR 0.45 TCGA-CK-4951-01 18 74083492 74083492 G A ZNF516 Silent p.F1098F 0.32 TCGA-CK-4951-01 18 74083500 74083500 C A ZNF516 Nonsense_Mutation p.G1096* 0.32 TCGA-CK-4951-01 18 74090977 74090977 G A ZNF516 Silent p.G1031G 0.33 TCGA-CK-4951-01 18 74090981 74090981 G A ZNF516 Missense_Mutation p.P1030L 0.33 deleterious(0.03) benign(0.209) TCGA-CK-4951-01 18 74620314 74620314 C T ZNF236 Missense_Mutation p.A777V 0.35 tolerated(0.16) benign(0.005) TCGA-CK-4951-01 18 77137256 77137256 T A ATP9B Missense_Mutation p.F1106Y 0.17 tolerated(0.31) benign(0.027) TCGA-CK-4951-01 18 77664036 77664036 G A PQLC1 Silent p.A252A 0.40 TCGA-CK-4951-01 18 77679245 77679245 C A PQLC1 Missense_Mutation p.A183S 0.31 deleterious(0) possibly_damaging(0.71) TCGA-CK-4951-01 18 77703442 77703442 G A PQLC1 Missense_Mutation p.S75F 0.25 tolerated(0.43) benign(0.013) TCGA-CK-4951-01 18 7774228 7774228 A G PTPRM Missense_Mutation p.N52S 0.28 tolerated(0.24) benign(0.007) TCGA-CK-4951-01 18 8784338 8784338 G A SOGA2 Missense_Mutation p.G410R 0.28 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 18 8824999 8824999 C T SOGA2 Missense_Mutation p.T1164I 0.24 deleterious(0) probably_damaging(0.98) TCGA-CK-4951-01 19 1005322 1005322 C T GRIN3B Missense_Mutation p.R608C 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 1007960 1007960 C T GRIN3B Silent p.F768F 0.27 TCGA-CK-4951-01 19 1011158 1011158 A T TMEM259 Nonsense_Mutation p.Y418* 0.38 TCGA-CK-4951-01 19 10226218 10226218 C T EIF3G Missense_Mutation p.R295H 0.40 deleterious(0.03) probably_damaging(0.914) TCGA-CK-4951-01 19 10226485 10226485 C T EIF3G Missense_Mutation p.A239T 0.28 tolerated(0.25) benign(0.127) TCGA-CK-4951-01 19 10226686 10226686 G A EIF3G Silent p.D220D 0.22 TCGA-CK-4951-01 19 10265047 10265047 G A DNMT1 Silent p.F647F 0.25 TCGA-CK-4951-01 19 1037661 1037661 A G CNN2 Missense_Mutation p.Y231C 0.42 deleterious(0.03) benign(0.06) TCGA-CK-4951-01 19 10385619 10385619 C T ICAM1 Silent p.S82S 0.22 TCGA-CK-4951-01 19 10395661 10395661 C T ICAM1 Silent p.S461S 0.21 TCGA-CK-4951-01 19 10403384 10403384 C T ICAM5 Missense_Mutation p.T353I 0.20 tolerated(0.08) possibly_damaging(0.548) TCGA-CK-4951-01 19 10406100 10406100 G A ICAM5 Missense_Mutation p.R770H 0.32 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 19 1043079 1043079 C T ABCA7 Silent p.L207L 0.31 TCGA-CK-4951-01 19 10439780 10439780 C T RAVER1 Silent p.V115V 0.21 TCGA-CK-4951-01 19 10445207 10445207 G T ICAM3 Missense_Mutation p.L397M 0.38 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 19 10445808 10445808 C T ICAM3 Missense_Mutation p.E291K 0.41 tolerated(0.26) benign(0.068) TCGA-CK-4951-01 19 10468773 10468773 G A TYK2 Silent p.N739N 0.23 TCGA-CK-4951-01 19 10625418 10625418 G T S1PR5 Silent p.A90A 0.23 TCGA-CK-4951-01 19 10625472 10625472 G A S1PR5 Silent p.F72F 0.19 TCGA-CK-4951-01 19 10625505 10625505 G A S1PR5 Silent p.L61L 0.23 TCGA-CK-4951-01 19 1063580 1063580 G T ABCA7 Missense_Mutation p.W1917L 0.35 tolerated(0.72) benign(0.003) TCGA-CK-4951-01 19 10798088 10798088 G A ILF3 Missense_Mutation p.G713D 0.25 deleterious(0.01) unknown(0) TCGA-CK-4951-01 19 1080312 1080312 G A HMHA1 Missense_Mutation p.E604K 0.18 tolerated(0.16) benign(0.097) TCGA-CK-4951-01 19 1080502 1080502 C T HMHA1 Missense_Mutation p.S639L 0.42 deleterious(0.01) benign(0.207) TCGA-CK-4951-01 19 1081559 1081559 C A HMHA1 Missense_Mutation p.A750D 0.14 deleterious(0) probably_damaging(0.981) TCGA-CK-4951-01 19 1083145 1083145 C T HMHA1 Silent p.I932I 0.41 TCGA-CK-4951-01 19 1091874 1091874 C T POLR2E Missense_Mutation p.V89M 0.34 tolerated(0.11) benign(0.005) TCGA-CK-4951-01 19 10939930 10939930 C T DNM2 Silent p.S759S 0.30 TCGA-CK-4951-01 19 11022925 11022925 G A CARM1 Silent p.R208R 0.33 TCGA-CK-4951-01 19 11036398 11036398 C T YIPF2 Missense_Mutation p.V111M 0.43 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 19 11040289 11040289 T A C19orf52 Missense_Mutation p.W232R 0.37 tolerated_low_confidence(0.24) possibly_damaging(0.854) TCGA-CK-4951-01 19 11144449 11144449 C T SMARCA4 Missense_Mutation p.H1261Y 0.50 benign(0.001) TCGA-CK-4951-01 19 11224354 11224354 C T LDLR Missense_Mutation p.A501V 0.11 deleterious(0.05) possibly_damaging(0.742) TCGA-CK-4951-01 19 1122487 1122487 C T SBNO2 Missense_Mutation p.A329T 0.32 tolerated(0.09) benign(0.047) TCGA-CK-4951-01 19 11285168 11285168 C A KANK2 Silent p.V691V 0.28 TCGA-CK-4951-01 19 11285217 11285217 C T KANK2 Missense_Mutation p.G675D 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 11348953 11348953 G A DOCK6 Silent p.S557S 0.50 TCGA-CK-4951-01 19 11470338 11470338 C T DKFZP761J1410 Missense_Mutation p.A41V 0.27 tolerated(0.3) benign(0.138) TCGA-CK-4951-01 19 11470381 11470381 C T DKFZP761J1410 Silent p.A55A 0.26 TCGA-CK-4951-01 19 11558556 11558556 G A PRKCSH Missense_Mutation p.E353K 0.24 deleterious(0.04) benign(0.043) TCGA-CK-4951-01 19 11606889 11606889 C G ZNF653 Missense_Mutation p.E145D 0.26 tolerated(0.09) benign(0.394) TCGA-CK-4951-01 19 11624999 11624999 G A ECSIT Missense_Mutation p.A45V 0.21 tolerated(0.18) benign(0.038) TCGA-CK-4951-01 19 11793480 11793480 G C ZNF833P RNA 0.37 TCGA-CK-4951-01 19 11849686 11849686 C T ZNF823 5'UTR 0.36 TCGA-CK-4951-01 19 11941469 11941469 C T ZNF440 Silent p.H56H 0.31 TCGA-CK-4951-01 19 1223107 1223107 C T STK11 Silent p.D348D 0.24 TCGA-CK-4951-01 19 12430215 12430215 C T ZNF563 Nonsense_Mutation p.W208* 0.23 TCGA-CK-4951-01 19 12551820 12551820 G A CTD-3105H18.16 5'UTR 0.24 TCGA-CK-4951-01 19 12842200 12842200 G A C19orf43 Silent p.L127L 0.33 TCGA-CK-4951-01 19 12856447 12856447 G A ASNA1 Silent p.S161S 0.29 TCGA-CK-4951-01 19 12865390 12865390 A G BEST2 Missense_Mutation p.N91S 0.32 tolerated(0.26) benign(0.017) TCGA-CK-4951-01 19 12878235 12878235 G A HOOK2 Silent p.A449A 0.17 TCGA-CK-4951-01 19 12886326 12886326 C T HOOK2 5'UTR 0.50 TCGA-CK-4951-01 19 12910736 12910736 G A PRDX2 Missense_Mutation p.R150C 0.29 deleterious(0.05) possibly_damaging(0.626) TCGA-CK-4951-01 19 12951868 12951868 C A MAST1 Missense_Mutation p.A79D 0.26 deleterious(0) possibly_damaging(0.794) TCGA-CK-4951-01 19 1295805 1295805 G A EFNA2 Silent p.T134T 0.17 TCGA-CK-4951-01 19 12969394 12969394 A - MAST1 Frame_Shift_Del p.K404Rfs*7 0.27 TCGA-CK-4951-01 19 13035770 13035770 C T FARSA Missense_Mutation p.R325Q 0.28 deleterious(0.01) possibly_damaging(0.864) TCGA-CK-4951-01 19 13051231 13051231 G A CALR Missense_Mutation p.A223T 0.28 tolerated(0.38) benign(0.217) TCGA-CK-4951-01 19 13255289 13255289 A G STX10 Missense_Mutation p.W229R 0.18 deleterious(0) probably_damaging(0.977) TCGA-CK-4951-01 19 13260671 13260671 G A STX10 Nonsense_Mutation p.Q26* 0.30 TCGA-CK-4951-01 19 13410038 13410038 C T CACNA1A Nonsense_Mutation p.W803* 0.27 TCGA-CK-4951-01 19 13616861 13616861 C T CACNA1A Missense_Mutation p.A60T 0.33 possibly_damaging(0.682) TCGA-CK-4951-01 19 1369315 1369315 A T MUM1 Missense_Mutation p.I493F 0.26 deleterious(0.03) possibly_damaging(0.827) TCGA-CK-4951-01 19 1376624 1376624 C G MUM1 3'UTR 0.23 TCGA-CK-4951-01 19 13873502 13873502 G A CCDC130 Missense_Mutation p.V271I 0.42 tolerated(0.48) benign(0.027) TCGA-CK-4951-01 19 13873527 13873527 G A CCDC130 Missense_Mutation p.R279H 0.23 tolerated(0.07) probably_damaging(0.964) TCGA-CK-4951-01 19 13873726 13873726 G A CCDC130 Silent p.K345K 0.21 TCGA-CK-4951-01 19 1388773 1388773 C T NDUFS7 Intron 0.31 TCGA-CK-4951-01 19 1395472 1395472 C G NDUFS7 Missense_Mutation p.I209M 0.36 tolerated_low_confidence(0.74) benign(0.008) TCGA-CK-4951-01 19 1397471 1397471 C T GAMT 3'Flank 0.39 TCGA-CK-4951-01 19 13988448 13988448 C T NANOS3 Missense_Mutation p.P129L 0.37 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 1398910 1398910 C T GAMT Missense_Mutation p.R192H 0.30 tolerated_low_confidence(0.59) benign(0.029) TCGA-CK-4951-01 19 14020651 14020651 G A CC2D1A Missense_Mutation p.D26N 0.51 deleterious(0) possibly_damaging(0.791) TCGA-CK-4951-01 19 14020737 14020737 C T CC2D1A Silent p.G54G 0.11 TCGA-CK-4951-01 19 14028953 14028953 C T CC2D1A Silent p.H273H 0.32 TCGA-CK-4951-01 19 14045142 14045142 G A PODNL1 Silent p.T199T 0.34 TCGA-CK-4951-01 19 14063424 14063424 G A DCAF15 Missense_Mutation p.E34K 0.30 tolerated_low_confidence(0.27) benign(0.154) TCGA-CK-4951-01 19 14070268 14070268 G A DCAF15 Missense_Mutation p.G399E 0.21 tolerated(0.54) benign(0.068) TCGA-CK-4951-01 19 14074516 14074516 G A RFX1 Nonsense_Mutation p.Q802* 0.33 TCGA-CK-4951-01 19 14079491 14079491 G A RFX1 Missense_Mutation p.L540F 0.18 tolerated(0.22) benign(0.042) TCGA-CK-4951-01 19 14083651 14083651 G A RFX1 Silent p.G406G 0.28 TCGA-CK-4951-01 19 14232514 14232514 C T ASF1B Missense_Mutation p.A78T 0.14 deleterious(0) possibly_damaging(0.678) TCGA-CK-4951-01 19 14262230 14262230 G C LPHN1 Missense_Mutation p.R1294G 0.32 deleterious(0) probably_damaging(0.961) TCGA-CK-4951-01 19 14274045 14274045 C T LPHN1 Missense_Mutation p.D195N 0.37 deleterious(0) possibly_damaging(0.791) TCGA-CK-4951-01 19 14520254 14520254 G A DDX39A Missense_Mutation p.S327L 0.19 tolerated(0.07) benign(0.097) TCGA-CK-4951-01 19 1455468 1455468 G A APC2 Missense_Mutation p.G203D 0.30 probably_damaging(0.997) TCGA-CK-4951-01 19 14581447 14581447 C T PKN1 Missense_Mutation p.R839C 0.39 deleterious(0.02) possibly_damaging(0.615) TCGA-CK-4951-01 19 14710554 14710554 C T CLEC17A Silent p.G224G 0.34 TCGA-CK-4951-01 19 1487840 1487840 G A PCSK4 Silent p.D179D 0.27 TCGA-CK-4951-01 19 14938443 14938443 G A OR7A5 Missense_Mutation p.A204V 0.45 tolerated_low_confidence(1) benign(0.002) TCGA-CK-4951-01 19 1506166 1506166 G A ADAMTSL5 Missense_Mutation p.P422S 0.24 tolerated(0.53) benign(0.21) TCGA-CK-4951-01 19 1507326 1507326 C T ADAMTSL5 Missense_Mutation p.G256D 0.15 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 19 15133833 15133833 C T CCDC105 Missense_Mutation p.R468W 0.34 deleterious(0.01) possibly_damaging(0.87) TCGA-CK-4951-01 19 15219867 15219867 G A SYDE1 Missense_Mutation p.G30D 0.33 tolerated_low_confidence(0.11) benign(0.255) TCGA-CK-4951-01 19 15291032 15291032 G A NOTCH3 Nonsense_Mutation p.Q1060* 0.32 TCGA-CK-4951-01 19 15483676 15483676 G A AKAP8 Missense_Mutation p.R283W 0.62 deleterious(0) possibly_damaging(0.689) TCGA-CK-4951-01 19 15535068 15535068 G A WIZ Silent p.V717V 0.26 TCGA-CK-4951-01 19 15572386 15572386 T C RASAL3 Missense_Mutation p.T121A 0.15 tolerated(0.73) benign(0) TCGA-CK-4951-01 19 15586440 15586440 C T PGLYRP2 Silent p.E347E 0.31 TCGA-CK-4951-01 19 1611556 1611556 A G TCF3 3'UTR 0.50 TCGA-CK-4951-01 19 1622052 1622052 C T TCF3 Splice_Site p.X274_splice 0.24 TCGA-CK-4951-01 19 16280546 16280546 G T CIB3 Missense_Mutation p.F31L 0.19 tolerated(0.07) benign(0.149) TCGA-CK-4951-01 19 16301760 16301760 G A FAM32A Silent p.T111T 0.36 TCGA-CK-4951-01 19 16435739 16435739 C T KLF2 Missense_Mutation p.A2V 0.20 deleterious(0) benign(0.324) TCGA-CK-4951-01 19 16620638 16620638 G A C19orf44 Missense_Mutation p.R493K 0.40 tolerated(0.12) possibly_damaging(0.648) TCGA-CK-4951-01 19 16636222 16636222 C G CHERP Silent p.G524G 0.28 TCGA-CK-4951-01 19 16638905 16638905 A T CHERP Missense_Mutation p.W431R 0.09 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CK-4951-01 19 16683024 16683024 A T SLC35E1 Missense_Mutation p.I51N 0.21 deleterious(0) probably_damaging(0.934) TCGA-CK-4951-01 19 16687480 16687480 C A MED26 Silent p.G387G 0.24 TCGA-CK-4951-01 19 16687859 16687859 C T MED26 Missense_Mutation p.G261E 0.38 deleterious(0.04) probably_damaging(0.949) TCGA-CK-4951-01 19 16770784 16770784 C T CTC-429P9.4 Silent p.V16V 0.32 TCGA-CK-4951-01 19 16908641 16908641 G T NWD1 Missense_Mutation p.V1135F 0.20 deleterious(0.01) possibly_damaging(0.664) TCGA-CK-4951-01 19 16952596 16952596 C T SIN3B Silent p.H133H 0.32 TCGA-CK-4951-01 19 17122454 17122454 G T CPAMD8 Silent p.G174G 0.20 TCGA-CK-4951-01 19 17166798 17166798 G A HAUS8 Silent p.S220S 0.12 TCGA-CK-4951-01 19 17166800 17166800 T A HAUS8 Missense_Mutation p.S220C 0.12 deleterious(0.01) possibly_damaging(0.893) TCGA-CK-4951-01 19 17317171 17317171 T A MYO9B Missense_Mutation p.F1791Y 0.19 deleterious(0) probably_damaging(0.943) TCGA-CK-4951-01 19 17374936 17374936 C T USHBP1 Silent p.E26E 0.22 TCGA-CK-4951-01 19 17375083 17375083 C T USHBP1 Missense_Mutation p.R9Q 0.22 deleterious(0) unknown(0) TCGA-CK-4951-01 19 17375096 17375096 C T USHBP1 Missense_Mutation p.A5T 0.24 deleterious(0) unknown(0) TCGA-CK-4951-01 19 17387676 17387676 C T BABAM1 Silent p.I248I 0.28 TCGA-CK-4951-01 19 17395022 17395022 G A ANKLE1 Silent p.R441R 0.33 TCGA-CK-4951-01 19 17396489 17396489 G A ANKLE1 Splice_Site p.X513_splice 0.29 TCGA-CK-4951-01 19 17439087 17439087 C T ANO8 Missense_Mutation p.D704N 0.24 tolerated(0.13) unknown(0) TCGA-CK-4951-01 19 17442140 17442140 A G ANO8 Missense_Mutation p.S223P 0.40 deleterious(0) probably_damaging(0.92) TCGA-CK-4951-01 19 17450384 17450384 A G GTPBP3 Missense_Mutation p.E349G 0.38 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 19 17571644 17571644 C T NXNL1 Missense_Mutation p.R12H 0.39 deleterious(0.04) probably_damaging(0.927) TCGA-CK-4951-01 19 17598037 17598037 G A SLC27A1 Missense_Mutation p.G206E 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-CK-4951-01 19 17599820 17599820 A G SLC27A1 Missense_Mutation p.N297S 0.24 tolerated(0.11) benign(0.166) TCGA-CK-4951-01 19 17622686 17622686 A T PGLS Missense_Mutation p.S69C 0.38 deleterious(0.05) benign(0.332) TCGA-CK-4951-01 19 17631836 17631836 C T PGLS Silent p.D241D 0.27 TCGA-CK-4951-01 19 17631965 17631965 C T PGLS 3'UTR 0.45 TCGA-CK-4951-01 19 17644400 17644400 A T FAM129C Missense_Mutation p.Y137F 0.26 tolerated(0.19) benign(0.272) TCGA-CK-4951-01 19 17688273 17688273 G A COLGALT1 Missense_Mutation p.G377D 0.36 deleterious(0) possibly_damaging(0.739) TCGA-CK-4951-01 19 17692175 17692175 G T COLGALT1 Missense_Mutation p.Q597H 0.38 deleterious(0.02) probably_damaging(0.91) TCGA-CK-4951-01 19 17883346 17883346 G A FCHO1 Silent p.T225T 0.23 TCGA-CK-4951-01 19 17895033 17895033 C T FCHO1 Silent p.L739L 0.42 TCGA-CK-4951-01 19 17955153 17955153 G A JAK3 Missense_Mutation p.A25V 0.44 tolerated(0.06) benign(0.006) TCGA-CK-4951-01 19 18170796 18170796 G A IL12RB1 Missense_Mutation p.P631S 0.36 tolerated(0.17) benign(0.005) TCGA-CK-4951-01 19 18197686 18197686 G A IL12RB1 5'UTR 0.38 TCGA-CK-4951-01 19 18254711 18254711 G A MAST3 Silent p.G797G 0.57 TCGA-CK-4951-01 19 18257754 18257754 G A MAST3 Missense_Mutation p.A1047T 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 19 18260067 18260067 G A MAST3 Missense_Mutation p.G1154D 0.28 deleterious(0.01) benign(0.415) TCGA-CK-4951-01 19 18304692 18304692 G A MPV17L2 Missense_Mutation p.G69D 0.35 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 18391951 18391951 G A JUND Missense_Mutation p.T115I 0.40 tolerated(0.16) probably_damaging(0.995) TCGA-CK-4951-01 19 18474311 18474311 G A PGPEP1 Missense_Mutation p.R183K 0.47 tolerated(0.83) benign(0.038) TCGA-CK-4951-01 19 18499566 18499566 G C GDF15 Missense_Mutation p.A250P 0.39 tolerated(0.44) benign(0.004) TCGA-CK-4951-01 19 18499617 18499617 G A GDF15 Missense_Mutation p.D267N 0.37 tolerated(0.14) possibly_damaging(0.834) TCGA-CK-4951-01 19 18507390 18507390 T A LRRC25 Silent p.R128R 0.38 TCGA-CK-4951-01 19 18546627 18546627 C T ISYNA1 Silent p.V360V 0.34 TCGA-CK-4951-01 19 18548691 18548691 G A ISYNA1 Silent p.S33S 0.24 TCGA-CK-4951-01 19 18548695 18548695 A G ISYNA1 Missense_Mutation p.V32A 0.26 tolerated(0.06) benign(0.414) TCGA-CK-4951-01 19 18561474 18561474 G C ELL Silent p.G426G 0.30 TCGA-CK-4951-01 19 18642998 18642998 A T FKBP8 Missense_Mutation p.V408D 0.32 deleterious(0) unknown(0) TCGA-CK-4951-01 19 18677973 18677973 C T KXD1 Missense_Mutation p.P96S 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-CK-4951-01 19 18775101 18775101 C T KLHL26 Silent p.C38C 0.60 TCGA-CK-4951-01 19 18779754 18779754 G A KLHL26 Missense_Mutation p.R516H 0.35 tolerated(0.07) benign(0.391) TCGA-CK-4951-01 19 18779849 18779849 G A KLHL26 Missense_Mutation p.G548S 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-CK-4951-01 19 1881271 1881271 C T ABHD17A Missense_Mutation p.V99I 0.08 tolerated(1) benign(0.009) TCGA-CK-4951-01 19 18893659 18893659 G C COMP 3'UTR 0.50 TCGA-CK-4951-01 19 18898395 18898395 G A COMP Missense_Mutation p.A347V 0.28 tolerated(0.12) benign(0.152) TCGA-CK-4951-01 19 18898400 18898400 G A COMP Silent p.G345G 0.30 TCGA-CK-4951-01 19 18943048 18943048 G A UPF1 Silent p.S10S 0.55 TCGA-CK-4951-01 19 18971687 18971687 G A UPF1 Missense_Mutation p.A785T 0.47 deleterious(0.04) benign(0.021) TCGA-CK-4951-01 19 18990077 18990077 G A CERS1 Silent p.L291L 0.31 TCGA-CK-4951-01 19 19010494 19010494 G A COPE Silent p.S307S 0.28 TCGA-CK-4951-01 19 19031467 19031467 C G DDX49 Missense_Mutation p.S65C 0.25 tolerated(0.13) benign(0.12) TCGA-CK-4951-01 19 19045159 19045159 C T HOMER3 Missense_Mutation p.D122N 0.38 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 19 19135982 19135982 G A SUGP2 Missense_Mutation p.A392V 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 19 19312614 19312614 T G RFXANK 3'UTR 0.35 TCGA-CK-4951-01 19 19313651 19313651 T C NR2C2AP Silent p.G26G 0.30 TCGA-CK-4951-01 19 19337417 19337417 G A NCAN Missense_Mutation p.V399M 0.23 tolerated(0.17) benign(0.01) TCGA-CK-4951-01 19 19338890 19338890 G A NCAN Missense_Mutation p.D821N 0.30 tolerated(0.2) benign(0.002) TCGA-CK-4951-01 19 19387782 19387782 C T SUGP1 Missense_Mutation p.A629T 0.42 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 19414764 19414764 G A SUGP1 Intron 0.38 TCGA-CK-4951-01 19 19606902 19606902 G A GATAD2A Silent p.P266P 0.55 TCGA-CK-4951-01 19 19611977 19611977 G A GATAD2A Missense_Mutation p.A418T 0.31 tolerated(0.11) benign(0.103) TCGA-CK-4951-01 19 19656051 19656051 C T CILP2 Silent p.F899F 0.38 TCGA-CK-4951-01 19 19756165 19756165 C T ATP13A1 3'UTR 0.30 TCGA-CK-4951-01 19 19757025 19757025 C T ATP13A1 Silent p.R1079R 0.43 TCGA-CK-4951-01 19 19790895 19790895 A T ZNF101 Missense_Mutation p.Y366F 0.38 deleterious(0.04) probably_damaging(0.914) TCGA-CK-4951-01 19 1979321 1979321 G A CSNK1G2 Missense_Mutation p.D258N 0.38 tolerated(0.05) probably_damaging(0.965) TCGA-CK-4951-01 19 19823107 19823107 A G ZNF14 Missense_Mutation p.I328T 0.45 tolerated(1) benign(0) TCGA-CK-4951-01 19 19825286 19825286 G A ZNF14 Missense_Mutation p.S5F 0.32 deleterious(0) benign(0.304) TCGA-CK-4951-01 19 19906384 19906385 - G ZNF506 Frame_Shift_Ins p.E104Dfs*4 0.09 TCGA-CK-4951-01 19 1990820 1990820 G A BTBD2 Missense_Mutation p.A229V 0.30 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 19 2109944 2109944 G A AP3D1 Missense_Mutation p.A1093V 0.40 tolerated(0.28) possibly_damaging(0.873) TCGA-CK-4951-01 19 2110143 2110143 T A AP3D1 Missense_Mutation p.I1086F 0.30 tolerated(0.26) benign(0) TCGA-CK-4951-01 19 21131820 21131820 G C ZNF85 Missense_Mutation p.R167T 0.35 deleterious(0.04) probably_damaging(0.965) TCGA-CK-4951-01 19 2118722 2118722 C T AP3D1 Missense_Mutation p.A531T 0.32 tolerated(0.1) benign(0.271) TCGA-CK-4951-01 19 21366817 21366817 A T ZNF431 Nonsense_Mutation p.R571* 0.36 TCGA-CK-4951-01 19 2213956 2213956 C T DOT1L Missense_Mutation p.R590C 0.15 tolerated(0.06) possibly_damaging(0.534) TCGA-CK-4951-01 19 2222367 2222367 C T DOT1L Silent p.L1067L 0.44 TCGA-CK-4951-01 19 2223323 2223323 C T DOT1L Missense_Mutation p.S1145F 0.11 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CK-4951-01 19 2246778 2246778 G A SF3A2 Missense_Mutation p.G128S 0.35 tolerated_low_confidence(0.05) possibly_damaging(0.78) TCGA-CK-4951-01 19 2246906 2246906 G A SF3A2 Missense_Mutation p.G144D 0.29 tolerated_low_confidence(0.24) benign(0.134) TCGA-CK-4951-01 19 2252472 2252472 G A JSRP1 Silent p.R284R 0.36 TCGA-CK-4951-01 19 22847782 22847782 T C ZNF492 Silent p.S437S 0.22 TCGA-CK-4951-01 19 22847793 22847793 T C ZNF492 Missense_Mutation p.V441A 0.20 tolerated(0.59) benign(0.026) TCGA-CK-4951-01 19 22848158 22848158 G A ZNF492 3'UTR 0.37 TCGA-CK-4951-01 19 2337596 2337596 G A SPPL2B RNA 0.48 TCGA-CK-4951-01 19 2413852 2413852 C T TMPRSS9 Missense_Mutation p.T436I 0.32 deleterious(0.01) benign(0.067) TCGA-CK-4951-01 19 2413866 2413866 C T TMPRSS9 Missense_Mutation p.P441S 0.30 tolerated(0.39) benign(0.01) TCGA-CK-4951-01 19 2433872 2433872 C G LMNB2 Missense_Mutation p.E478D 0.40 tolerated(0.05) benign(0.004) TCGA-CK-4951-01 19 2435054 2435054 T C LMNB2 Missense_Mutation p.H267R 0.46 deleterious(0) benign(0.419) TCGA-CK-4951-01 19 2456734 2456734 C T LMNB2 Silent p.A66A 0.38 TCGA-CK-4951-01 19 2456775 2456775 G C LMNB2 Missense_Mutation p.L53V 0.20 deleterious(0) probably_damaging(0.949) TCGA-CK-4951-01 19 2717149 2717149 G A DIRAS1 3'UTR 0.32 TCGA-CK-4951-01 19 2733139 2733139 G A SLC39A3 Silent p.G185G 0.31 TCGA-CK-4951-01 19 2762546 2762546 G A SGTA Silent p.N198N 0.16 TCGA-CK-4951-01 19 2790510 2790510 C T THOP1 Silent p.R36R 0.29 TCGA-CK-4951-01 19 2917858 2917858 G A ZNF57 Silent p.T413T 0.22 TCGA-CK-4951-01 19 30205910 30205910 G A C19orf12 5'UTR 0.16 TCGA-CK-4951-01 19 3028709 3028709 G A TLE2 Silent p.Y39Y 0.34 TCGA-CK-4951-01 19 30314729 30314729 C T CCNE1 3'UTR 0.23 TCGA-CK-4951-01 19 306631 306631 C T MIER2 3'UTR 0.35 TCGA-CK-4951-01 19 3110312 3110312 A G GNA11 Missense_Mutation p.Y101C 0.20 deleterious(0) probably_damaging(0.982) TCGA-CK-4951-01 19 31768568 31768568 C T TSHZ3 Missense_Mutation p.D711N 0.58 tolerated(0.22) possibly_damaging(0.496) TCGA-CK-4951-01 19 3179512 3179512 C T S1PR4 Missense_Mutation p.A241V 0.18 tolerated(0.36) benign(0.084) TCGA-CK-4951-01 19 3192531 3192531 G A NCLN Missense_Mutation p.R83H 0.30 tolerated(0.18) benign(0.078) TCGA-CK-4951-01 19 3204589 3204589 C T NCLN Missense_Mutation p.P350S 0.22 tolerated(0.06) benign(0.394) TCGA-CK-4951-01 19 3204603 3204603 C T NCLN Silent p.F354F 0.21 TCGA-CK-4951-01 19 327154 327154 G C MIER2 Missense_Mutation p.L158V 0.39 tolerated(0.09) probably_damaging(0.998) TCGA-CK-4951-01 19 33117624 33117624 G T ANKRD27 Missense_Mutation p.S510R 0.21 deleterious(0.04) possibly_damaging(0.765) TCGA-CK-4951-01 19 33168143 33168143 G A RGS9BP 3'UTR 0.32 TCGA-CK-4951-01 19 33168604 33168604 C T RGS9BP 3'UTR 0.37 TCGA-CK-4951-01 19 33359416 33359416 G A SLC7A9 Missense_Mutation p.R9W 0.27 deleterious(0) possibly_damaging(0.816) TCGA-CK-4951-01 19 334504 334504 C T MIER2 Missense_Mutation p.A47T 0.28 tolerated(0.06) benign(0.025) TCGA-CK-4951-01 19 33663341 33663341 A G WDR88 Missense_Mutation p.K413E 0.26 tolerated(0.79) benign(0.025) TCGA-CK-4951-01 19 33695640 33695640 C T LRP3 Silent p.L119L 0.46 TCGA-CK-4951-01 19 33696961 33696961 C T LRP3 Silent p.L429L 0.23 TCGA-CK-4951-01 19 33696979 33696979 G A LRP3 Missense_Mutation p.D435N 0.31 deleterious(0) possibly_damaging(0.551) TCGA-CK-4951-01 19 33696988 33696988 A T LRP3 Missense_Mutation p.N438Y 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-CK-4951-01 19 33698253 33698253 C T LRP3 Silent p.P695P 0.48 TCGA-CK-4951-01 19 3381846 3381846 C A NFIC Missense_Mutation p.A56E 0.33 deleterious(0.02) possibly_damaging(0.786) TCGA-CK-4951-01 19 33870846 33870846 A - CEBPG 3'UTR 0.25 TCGA-CK-4951-01 19 33873589 33873589 A C CEBPG 3'UTR 0.45 TCGA-CK-4951-01 19 33904511 33904511 C T PEPD Missense_Mutation p.R237H 0.32 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 19 34791568 34791568 C T KIAA0355 Missense_Mutation p.H64Y 0.26 tolerated_low_confidence(0.2) benign(0.143) TCGA-CK-4951-01 19 3543589 3543589 A T C19orf71 Missense_Mutation p.D120V 0.20 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 3546083 3546083 C T MFSD12 Silent p.L426L 0.27 TCGA-CK-4951-01 19 35504470 35504470 A T GRAMD1A Missense_Mutation p.I249F 0.26 tolerated(0.52) benign(0.37) TCGA-CK-4951-01 19 35510325 35510325 G T GRAMD1A Missense_Mutation p.G455W 0.33 deleterious(0.03) possibly_damaging(0.865) TCGA-CK-4951-01 19 35530151 35530151 A T SCN1B 3'Flank 0.31 TCGA-CK-4951-01 19 35551306 35551306 C T HPN Silent p.S170S 0.33 TCGA-CK-4951-01 19 35556158 35556158 C T HPN Silent p.Y272Y 0.13 TCGA-CK-4951-01 19 35614448 35614448 A G FXYD3 3'UTR 0.33 TCGA-CK-4951-01 19 35617309 35617309 C T LGI4 Silent p.V388V 0.33 TCGA-CK-4951-01 19 35715859 35715859 C T FAM187B Missense_Mutation p.A327T 0.35 tolerated(0.05) possibly_damaging(0.554) TCGA-CK-4951-01 19 3574487 3574487 G A HMG20B Missense_Mutation p.R85H 0.40 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 3577038 3577038 G A HMG20B Silent p.A247A 0.29 TCGA-CK-4951-01 19 35786333 35786333 C T MAG Missense_Mutation p.P8S 0.16 tolerated(0.44) benign(0.196) TCGA-CK-4951-01 19 35851161 35851161 G C FFAR3 3'UTR 0.15 TCGA-CK-4951-01 19 36015804 36015804 G C SBSN Missense_Mutation p.S554C 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-CK-4951-01 19 36038273 36038273 C T TMEM147 Missense_Mutation p.A200V 0.42 tolerated(0.89) benign(0.003) TCGA-CK-4951-01 19 3614400 3614400 C A CACTIN Silent p.R450R 0.15 TCGA-CK-4951-01 19 36211064 36211064 C T KMT2B Missense_Mutation p.P272L 0.35 unknown(0) TCGA-CK-4951-01 19 36211673 36211673 C T KMT2B Missense_Mutation p.T475I 0.27 probably_damaging(0.969) TCGA-CK-4951-01 19 36223579 36223579 C T KMT2B Silent p.S2043S 0.26 TCGA-CK-4951-01 19 36236308 36236308 C T PSENEN 5'UTR 0.37 TCGA-CK-4951-01 19 36258808 36258808 C T C19orf55 Missense_Mutation p.P354L 0.31 tolerated(0.11) benign(0.009) TCGA-CK-4951-01 19 36271380 36271380 C T ARHGAP33 Missense_Mutation p.R228W 0.49 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-CK-4951-01 19 36273551 36273551 T C ARHGAP33 Missense_Mutation p.V428A 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.654) TCGA-CK-4951-01 19 36342457 36342457 C T NPHS1 Missense_Mutation p.G59D 0.46 tolerated(0.11) benign(0.05) TCGA-CK-4951-01 19 36351539 36351539 G A KIRREL2 Missense_Mutation p.A300T 0.39 tolerated(1) benign(0.022) TCGA-CK-4951-01 19 36430354 36430354 C T LRFN3 Silent p.C9C 0.43 TCGA-CK-4951-01 19 36518043 36518043 G A CLIP3 Silent p.I99I 0.31 TCGA-CK-4951-01 19 36545091 36545091 C A THAP8 Missense_Mutation p.C10F 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-CK-4951-01 19 36546033 36546033 G A WDR62 Missense_Mutation p.E54K 0.23 tolerated(0.05) benign(0.167) TCGA-CK-4951-01 19 36564321 36564321 T A WDR62 Missense_Mutation p.L374Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 19 36604688 36604688 G A POLR2I Missense_Mutation p.A116V 0.22 tolerated(0.07) benign(0.011) TCGA-CK-4951-01 19 36884698 36884698 G A ZFP82 Missense_Mutation p.R182C 0.30 tolerated(0.18) probably_damaging(0.915) TCGA-CK-4951-01 19 37065751 37065751 C T ZNF529 5'Flank 0.25 TCGA-CK-4951-01 19 37309844 37309844 G A ZNF790 Missense_Mutation p.H468Y 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 19 37368517 37368517 A G ZNF345 Missense_Mutation p.E262G 0.31 deleterious(0) benign(0.367) TCGA-CK-4951-01 19 3746815 3746815 G A TJP3 Missense_Mutation p.E764K 0.22 tolerated(0.06) benign(0.32) TCGA-CK-4951-01 19 3746824 3746824 G A TJP3 Missense_Mutation p.A767T 0.18 deleterious(0.01) benign(0.438) TCGA-CK-4951-01 19 3762752 3762752 C A MRPL54 Silent p.A18A 0.31 TCGA-CK-4951-01 19 3778109 3778109 C T MATK 3'UTR 0.26 TCGA-CK-4951-01 19 3778343 3778343 G A MATK Silent p.H455H 0.19 TCGA-CK-4951-01 19 38134171 38134171 G A ZFP30 Missense_Mutation p.T77I 0.23 tolerated(0.26) benign(0.009) TCGA-CK-4951-01 19 38189183 38189183 A G ZNF607 Missense_Mutation p.Y617H 0.24 deleterious(0.02) probably_damaging(0.928) TCGA-CK-4951-01 19 3831806 3831806 C T ZFR2 Silent p.A150A 0.20 TCGA-CK-4951-01 19 38591818 38591818 G A SIPA1L3 Missense_Mutation p.V661I 0.22 deleterious(0.03) probably_damaging(0.919) TCGA-CK-4951-01 19 38818042 38818042 A T KCNK6 Nonstop_Mutation p.*314Lext*34 0.27 TCGA-CK-4951-01 19 38853399 38853399 T A CATSPERG Missense_Mutation p.L801Q 0.11 deleterious(0) possibly_damaging(0.883) TCGA-CK-4951-01 19 38876936 38876936 G A GGN Silent p.C322C 0.40 TCGA-CK-4951-01 19 38876948 38876948 G A GGN Silent p.D318D 0.37 TCGA-CK-4951-01 19 38885393 38885393 C T SPRED3 Silent p.T178T 0.18 TCGA-CK-4951-01 19 38916834 38916834 C T RASGRP4 5'Flank 0.48 TCGA-CK-4951-01 19 39003007 39003007 G A RYR1 Missense_Mutation p.R3119H 0.25 benign(0.094) TCGA-CK-4951-01 19 39018995 39018995 C T RYR1 Missense_Mutation p.S3625F 0.41 benign(0.061) TCGA-CK-4951-01 19 39058456 39058456 G A RYR1 Missense_Mutation p.E4520K 0.24 unknown(0) TCGA-CK-4951-01 19 39071081 39071081 C A RYR1 Silent p.R4861R 0.37 TCGA-CK-4951-01 19 3907856 3907856 G A ATCAY Silent p.E161E 0.37 TCGA-CK-4951-01 19 39214664 39214664 G A ACTN4 Missense_Mutation p.A547T 0.36 tolerated(0.19) benign(0.354) TCGA-CK-4951-01 19 39221804 39221804 G A CAPN12 Silent p.L673L 0.34 TCGA-CK-4951-01 19 39359799 39359799 A T RINL Missense_Mutation p.L549Q 0.32 tolerated(0.06) benign(0.062) TCGA-CK-4951-01 19 39369822 39369822 C T SIRT2 Silent p.R381R 0.29 TCGA-CK-4951-01 19 39398154 39398154 G A NFKBIB Missense_Mutation p.R275H 0.33 tolerated(0.47) probably_damaging(0.921) TCGA-CK-4951-01 19 39435681 39435681 A G CTC-360G5.8 Silent p.Y112Y 0.11 TCGA-CK-4951-01 19 39443251 39443251 C T FBXO17 Intron 0.26 TCGA-CK-4951-01 19 39575807 39575807 T C PAPL 5'UTR 0.39 TCGA-CK-4951-01 19 39575958 39575958 T A PAPL Missense_Mutation p.F17I 0.35 tolerated(0.15) benign(0.003) TCGA-CK-4951-01 19 39597601 39597601 G C PAPL Silent p.R376R 0.25 TCGA-CK-4951-01 19 3964268 3964268 T A DAPK3 Missense_Mutation p.N176I 0.25 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 19 39663782 39663782 G T PAK4 Missense_Mutation p.E143D 0.33 tolerated(0.36) benign(0) TCGA-CK-4951-01 19 39759842 39759842 C T IFNL2 Silent p.P81P 0.16 TCGA-CK-4951-01 19 3983158 3983158 G A EEF2 Missense_Mutation p.A117V 0.38 deleterious(0) possibly_damaging(0.897) TCGA-CK-4951-01 19 3985380 3985380 G A EEF2 5'UTR 0.37 TCGA-CK-4951-01 19 39881968 39881968 G A MED29 5'UTR 0.36 TCGA-CK-4951-01 19 39881983 39881983 G A MED29 5'UTR 0.36 TCGA-CK-4951-01 19 39881986 39881986 G A MED29 5'UTR 0.38 TCGA-CK-4951-01 19 39915738 39915738 A C PLEKHG2 Missense_Mutation p.Q1322P 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.83) TCGA-CK-4951-01 19 39961143 39961143 C G SUPT5H Missense_Mutation p.L553V 0.30 tolerated(0.06) benign(0.338) TCGA-CK-4951-01 19 39998568 39998568 T C DLL3 Missense_Mutation p.L591P 0.34 tolerated(0.17) benign(0.001) TCGA-CK-4951-01 19 40096030 40096030 T A LGALS13 Splice_Site p.X101_splice 0.23 TCGA-CK-4951-01 19 40276367 40276367 G A LEUTX Nonsense_Mutation p.W33* 0.39 TCGA-CK-4951-01 19 40329748 40329748 G C FBL Missense_Mutation p.P159R 0.37 deleterious(0.02) possibly_damaging(0.546) TCGA-CK-4951-01 19 40368381 40368381 T A FCGBP Nonsense_Mutation p.K4323* 0.07 TCGA-CK-4951-01 19 40398052 40398052 G A FCGBP Silent p.G2305G 0.12 TCGA-CK-4951-01 19 40521204 40521204 G A ZNF546 Missense_Mutation p.R676Q 0.29 tolerated(0.71) benign(0.158) TCGA-CK-4951-01 19 4054762 4054762 C T ZBTB7A Missense_Mutation p.A157T 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-CK-4951-01 19 40581499 40581499 T C ZNF780A Missense_Mutation p.K285E 0.32 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 19 40715080 40715080 C - MAP3K10 Frame_Shift_Del p.P504Lfs*10 0.27 TCGA-CK-4951-01 19 40832290 40832290 G A C19orf47 Silent p.G218G 0.36 TCGA-CK-4951-01 19 40889964 40889964 G A HIPK4 Missense_Mutation p.A183V 0.37 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 19 41112380 41112381 GT - LTBP4 Frame_Shift_Del p.C383Pfs*45 0.34 TCGA-CK-4951-01 19 41122906 41122906 C T LTBP4 Missense_Mutation p.T1042M 0.30 tolerated(0.07) benign(0.176) TCGA-CK-4951-01 19 41198051 41198051 G A ADCK4 Silent p.C508C 0.15 TCGA-CK-4951-01 19 41306958 41306958 G A EGLN2 Missense_Mutation p.A161T 0.29 deleterious_low_confidence(0.02) benign(0.027) TCGA-CK-4951-01 19 4174876 4174876 A T SIRT6 Missense_Mutation p.L269Q 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 41825595 41825595 C T CCDC97 Missense_Mutation p.P207S 0.23 tolerated(0.61) benign(0.011) TCGA-CK-4951-01 19 41825597 41825597 C T CCDC97 Silent p.P207P 0.21 TCGA-CK-4951-01 19 41825598 41825598 C T CCDC97 Missense_Mutation p.P208S 0.18 tolerated(0.3) possibly_damaging(0.592) TCGA-CK-4951-01 19 41837031 41837031 C T TGFB1 Missense_Mutation p.V367M 0.33 deleterious(0.01) probably_damaging(0.955) TCGA-CK-4951-01 19 41838117 41838117 C T TGFB1 Nonsense_Mutation p.W310* 0.27 TCGA-CK-4951-01 19 41889027 41889027 C T TMEM91 Intron 0.55 TCGA-CK-4951-01 19 41938162 41938162 C T ATP5SL Missense_Mutation p.D256N 0.33 tolerated(0.08) benign(0.178) TCGA-CK-4951-01 19 4216990 4216990 C T ANKRD24 Silent p.T611T 0.30 TCGA-CK-4951-01 19 42301657 42301657 G A CEACAM3 Nonsense_Mutation p.W67* 0.32 TCGA-CK-4951-01 19 42392270 42392270 C T ARHGEF1 Missense_Mutation p.P26L 0.08 tolerated(0.06) possibly_damaging(0.628) TCGA-CK-4951-01 19 42396093 42396093 C T ARHGEF1 Intron 0.25 TCGA-CK-4951-01 19 42406708 42406708 T A ARHGEF1 Missense_Mutation p.F523Y 0.31 deleterious(0) benign(0.435) TCGA-CK-4951-01 19 42482319 42482319 C T ATP1A3 Missense_Mutation p.R610H 0.27 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 19 42489455 42489455 C G ATP1A3 Intron 0.27 TCGA-CK-4951-01 19 42584374 42584374 C G ZNF574 Missense_Mutation p.A539G 0.37 tolerated(0.51) probably_damaging(0.918) TCGA-CK-4951-01 19 42752695 42752695 C - ERF Frame_Shift_Del p.L525Sfs*6 0.16 TCGA-CK-4951-01 19 42753545 42753545 C - ERF Frame_Shift_Del p.G240Vfs*31 0.24 TCGA-CK-4951-01 19 42794055 42794055 C T CIC Silent p.T472T 0.31 TCGA-CK-4951-01 19 42796283 42796283 G A CIC Missense_Mutation p.V978M 0.25 probably_damaging(0.969) TCGA-CK-4951-01 19 42799130 42799130 G A CIC Silent p.P1538P 0.35 TCGA-CK-4951-01 19 42804385 42804385 C T PAFAH1B3 Missense_Mutation p.D75N 0.43 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 19 42837912 42837912 T A MEGF8 Missense_Mutation p.S115T 0.52 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 19 42856494 42856494 G A MEGF8 Missense_Mutation p.R1012H 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-CK-4951-01 19 42860031 42860031 G A MEGF8 Silent p.V1355V 0.45 TCGA-CK-4951-01 19 42860995 42860995 G A MEGF8 Silent p.S1497S 0.18 TCGA-CK-4951-01 19 42861643 42861643 T A MEGF8 Missense_Mutation p.S1573T 0.43 deleterious(0) probably_damaging(0.967) TCGA-CK-4951-01 19 42872714 42872714 C T MEGF8 Silent p.C2060C 0.23 TCGA-CK-4951-01 19 42872779 42872779 G A MEGF8 Missense_Mutation p.R2082H 0.43 tolerated(0.2) benign(0.005) TCGA-CK-4951-01 19 42880397 42880397 T C MEGF8 Missense_Mutation p.W2603R 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 4290544 4290544 G A SHD Missense_Mutation p.V313I 0.51 tolerated(0.83) benign(0.264) TCGA-CK-4951-01 19 42911451 42911451 G A LIPE Missense_Mutation p.A671V 0.41 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 19 42911851 42911851 G A LIPE Silent p.P583P 0.34 TCGA-CK-4951-01 19 42914951 42914951 C T LIPE Silent p.Q309Q 0.45 TCGA-CK-4951-01 19 42932989 42932990 - T CXCL17 3'UTR 0.21 TCGA-CK-4951-01 19 4302362 4302362 C T TMIGD2 Silent p.V7V 0.09 TCGA-CK-4951-01 19 4310510 4310510 C T FSD1 Missense_Mutation p.A136V 0.30 tolerated(0.43) benign(0.004) TCGA-CK-4951-01 19 4323691 4323691 G A FSD1 3'UTR 0.12 TCGA-CK-4951-01 19 43259226 43259226 G A PSG8 Missense_Mutation p.T301M 0.23 deleterious(0) benign(0.432) TCGA-CK-4951-01 19 43268121 43268121 A G PSG8 Missense_Mutation p.M126T 0.27 tolerated(0.14) benign(0.001) TCGA-CK-4951-01 19 4326973 4326973 C T STAP2 Silent p.E265E 0.27 TCGA-CK-4951-01 19 4327368 4327368 C T STAP2 Missense_Mutation p.R202Q 0.30 deleterious(0.02) possibly_damaging(0.621) TCGA-CK-4951-01 19 4365515 4365515 G A SH3GL1 Missense_Mutation p.R99C 0.27 deleterious(0) possibly_damaging(0.849) TCGA-CK-4951-01 19 43762530 43762530 G A PSG9 Missense_Mutation p.T356M 0.35 deleterious(0.03) possibly_damaging(0.631) TCGA-CK-4951-01 19 43766225 43766225 G A PSG9 Missense_Mutation p.R166C 0.36 deleterious(0.05) possibly_damaging(0.505) TCGA-CK-4951-01 19 43991200 43991200 G - PHLDB3 Frame_Shift_Del p.R409Dfs*32 0.34 TCGA-CK-4951-01 19 43998904 43998904 C T PHLDB3 Missense_Mutation p.A367T 0.32 tolerated(0.09) possibly_damaging(0.808) TCGA-CK-4951-01 19 44012130 44012130 C T ETHE1 Missense_Mutation p.M226I 0.15 deleterious(0) possibly_damaging(0.558) TCGA-CK-4951-01 19 44096200 44096200 G A IRGQ Missense_Mutation p.A617V 0.31 tolerated(0.2) benign(0.407) TCGA-CK-4951-01 19 44096335 44096335 G A IRGQ Missense_Mutation p.A572V 0.23 tolerated(0.12) probably_damaging(0.99) TCGA-CK-4951-01 19 44116999 44116999 G A SRRM5 Silent p.V242V 0.25 TCGA-CK-4951-01 19 44117851 44117851 C T SRRM5 Silent p.S526S 0.32 TCGA-CK-4951-01 19 44129319 44129319 C T CADM4 Missense_Mutation p.G280D 0.15 tolerated(0.36) benign(0.096) TCGA-CK-4951-01 19 44278528 44278528 C T KCNN4 Missense_Mutation p.V167M 0.11 tolerated(1) benign(0.055) TCGA-CK-4951-01 19 44303958 44303958 A T LYPD5 Missense_Mutation p.F31L 0.11 tolerated(0.23) benign(0.051) TCGA-CK-4951-01 19 44352840 44352840 T A ZNF283 3'UTR 0.32 TCGA-CK-4951-01 19 4446594 4446594 G A UBXN6 Missense_Mutation p.R275C 0.33 tolerated(0.16) benign(0.014) TCGA-CK-4951-01 19 44536468 44536468 C T ZNF222 Missense_Mutation p.S254L 0.23 tolerated(0.06) possibly_damaging(0.543) TCGA-CK-4951-01 19 44536535 44536535 G T ZNF222 Missense_Mutation p.K276N 0.30 deleterious(0) possibly_damaging(0.685) TCGA-CK-4951-01 19 44571162 44571162 A T ZNF223 Missense_Mutation p.H394L 0.54 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 44677076 44677076 C T ZNF226 Missense_Mutation p.T69M 0.39 deleterious(0) benign(0.128) TCGA-CK-4951-01 19 44740934 44740934 G A ZNF227 Missense_Mutation p.R784H 0.23 tolerated(0.42) benign(0.001) TCGA-CK-4951-01 19 44777940 44777940 G A ZNF233 Missense_Mutation p.G376E 0.26 tolerated(0.08) benign(0.142) TCGA-CK-4951-01 19 44793014 44793014 G A ZNF235 Nonsense_Mutation p.Q192* 0.26 TCGA-CK-4951-01 19 44840840 44840840 G A ZNF112 Silent p.S58S 0.32 TCGA-CK-4951-01 19 4496386 4496386 G A HDGFRP2 Missense_Mutation p.E438K 0.36 tolerated(0.19) unknown(0) TCGA-CK-4951-01 19 4501221 4501221 A T HDGFRP2 Missense_Mutation p.N608I 0.22 deleterious(0) possibly_damaging(0.844) TCGA-CK-4951-01 19 45150541 45150541 C T PVR Silent p.G42G 0.39 TCGA-CK-4951-01 19 45153169 45153169 C T PVR Silent p.R172R 0.21 TCGA-CK-4951-01 19 4517625 4517625 C T PLIN4 Missense_Mutation p.R31Q 0.35 tolerated(0.44) benign(0.01) TCGA-CK-4951-01 19 45260402 45260402 C T BCL3 Silent p.R216R 0.23 TCGA-CK-4951-01 19 45260637 45260637 C T BCL3 Missense_Mutation p.L260F 0.44 tolerated(0.06) benign(0.145) TCGA-CK-4951-01 19 45261660 45261660 G A BCL3 Missense_Mutation p.R350H 0.33 deleterious(0.05) possibly_damaging(0.734) TCGA-CK-4951-01 19 45322626 45322626 G A BCAM Silent p.R499R 0.24 TCGA-CK-4951-01 19 4538615 4538615 G A LRG1 Silent p.A127A 0.31 TCGA-CK-4951-01 19 45404331 45404331 C T TOMM40 Silent p.H271H 0.32 TCGA-CK-4951-01 19 45575715 45575715 G A ZNF296 Missense_Mutation p.A191V 0.43 deleterious(0.01) possibly_damaging(0.612) TCGA-CK-4951-01 19 45575761 45575761 C T ZNF296 Missense_Mutation p.A176T 0.41 deleterious(0) possibly_damaging(0.551) TCGA-CK-4951-01 19 45593631 45593631 C T GEMIN7 Missense_Mutation p.R87C 0.22 tolerated(0.12) possibly_damaging(0.521) TCGA-CK-4951-01 19 45667234 45667234 C T TRAPPC6A Missense_Mutation p.A144T 0.38 tolerated(0.37) benign(0.002) TCGA-CK-4951-01 19 45731440 45731440 C T EXOC3L2 Missense_Mutation p.A59T 0.25 deleterious(0) probably_damaging(0.92) TCGA-CK-4951-01 19 45851316 45851316 C T KLC3 Missense_Mutation p.A226V 0.30 deleterious(0) probably_damaging(0.983) TCGA-CK-4951-01 19 45911713 45911713 T A CD3EAP Missense_Mutation p.S163T 0.25 deleterious(0.01) probably_damaging(0.97) TCGA-CK-4951-01 19 46029461 46029461 C T VASP 3'UTR 0.38 TCGA-CK-4951-01 19 46032528 46032528 C T OPA3 Missense_Mutation p.R110H 0.29 tolerated(0.49) benign(0.009) TCGA-CK-4951-01 19 46190956 46190956 T A SNRPD2 Missense_Mutation p.K71M 0.27 deleterious(0.02) probably_damaging(0.97) TCGA-CK-4951-01 19 46190963 46190963 T A SNRPD2 Missense_Mutation p.N69Y 0.26 deleterious(0) probably_damaging(0.957) TCGA-CK-4951-01 19 46216077 46216077 C T FBXO46 Missense_Mutation p.R226H 0.33 deleterious(0) probably_damaging(0.984) TCGA-CK-4951-01 19 46269874 46269874 A G SIX5 Missense_Mutation p.V448A 0.36 deleterious(0.04) benign(0.003) TCGA-CK-4951-01 19 46318525 46318525 C A RSPH6A 5'UTR 0.36 TCGA-CK-4951-01 19 46334677 46334677 C T SYMPK Silent p.R521R 0.35 TCGA-CK-4951-01 19 46404705 46404705 G A MYPOP Silent p.F109F 0.31 TCGA-CK-4951-01 19 464105 464105 G C ODF3L2 Silent p.G203G 0.29 TCGA-CK-4951-01 19 464163 464163 G A ODF3L2 Missense_Mutation p.T184M 0.38 deleterious(0) probably_damaging(0.918) TCGA-CK-4951-01 19 46443681 46443681 C T NOVA2 Missense_Mutation p.G307S 0.30 deleterious(0.02) benign(0.004) TCGA-CK-4951-01 19 46543595 46543595 G A IGFL4 Silent p.D50D 0.24 TCGA-CK-4951-01 19 46823785 46823785 C T HIF3A Nonsense_Mutation p.Q371* 0.20 TCGA-CK-4951-01 19 46832532 46832532 C T HIF3A Silent p.N503N 0.26 TCGA-CK-4951-01 19 4688827 4688827 G A DPP9 Silent p.P609P 0.29 TCGA-CK-4951-01 19 46915898 46915898 C T CCDC8 Missense_Mutation p.R57H 0.21 probably_damaging(0.999) TCGA-CK-4951-01 19 46916590 46916590 C T CCDC8 5'UTR 0.39 TCGA-CK-4951-01 19 46916661 46916661 G A CCDC8 5'UTR 0.09 TCGA-CK-4951-01 19 47105448 47105448 G A CALM3 Intron 0.49 TCGA-CK-4951-01 19 47127216 47127216 G A PTGIR Silent p.P89P 0.38 TCGA-CK-4951-01 19 47181777 47181777 G A PRKD2 Silent p.G738G 0.33 TCGA-CK-4951-01 19 47204202 47204202 C A PRKD2 Silent p.P325P 0.27 TCGA-CK-4951-01 19 47226179 47226179 G A STRN4 Silent p.F605F 0.20 TCGA-CK-4951-01 19 47226418 47226418 G A STRN4 Missense_Mutation p.P580L 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 19 47260361 47260361 G A FKRP 3'UTR 0.46 TCGA-CK-4951-01 19 47261355 47261355 C T FKRP 3'UTR 0.28 TCGA-CK-4951-01 19 47424131 47424131 C G ARHGAP35 Silent p.L733L 0.32 TCGA-CK-4951-01 19 47425382 47425382 C T ARHGAP35 Silent p.S1150S 0.32 TCGA-CK-4951-01 19 47548515 47548515 G A NPAS1 Missense_Mutation p.G460D 0.33 tolerated(0.08) benign(0.282) TCGA-CK-4951-01 19 47569861 47569861 G A ZC3H4 Missense_Mutation p.R1222W 0.39 unknown(0) TCGA-CK-4951-01 19 47570533 47570534 - G ZC3H4 Frame_Shift_Ins p.V998Rfs*47 0.25 TCGA-CK-4951-01 19 47769912 47769912 C T CCDC9 Silent p.S255S 0.37 TCGA-CK-4951-01 19 47844112 47844112 G A C5AR2 Missense_Mutation p.R19H 0.23 tolerated(0.15) benign(0) TCGA-CK-4951-01 19 47884241 47884241 T C DHX34 Missense_Mutation p.C1051R 0.35 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 19 47920544 47920544 C T MEIS3 Missense_Mutation p.E26K 0.40 tolerated(0.06) benign(0.352) TCGA-CK-4951-01 19 4793521 4793521 G A FEM1A Missense_Mutation p.R552H 0.19 deleterious(0) probably_damaging(0.977) TCGA-CK-4951-01 19 47994083 47994083 G A NAPA Missense_Mutation p.P233S 0.41 deleterious(0) possibly_damaging(0.784) TCGA-CK-4951-01 19 48041649 48041649 C A ZNF541 Missense_Mutation p.Q967H 0.30 tolerated(0.28) benign(0.066) TCGA-CK-4951-01 19 4818524 4818524 C T TICAM1 5'UTR 0.31 TCGA-CK-4951-01 19 48197568 48197568 C - GLTSCR1 Frame_Shift_Del p.P829Qfs*13 0.35 TCGA-CK-4951-01 19 48219923 48219923 C T EHD2 Silent p.I18I 0.35 TCGA-CK-4951-01 19 4852095 4852095 G A PLIN3 Silent p.V189V 0.57 TCGA-CK-4951-01 19 48866556 48866556 G A TMEM143 Silent p.L86L 0.32 TCGA-CK-4951-01 19 48866560 48866560 G A TMEM143 Silent p.R84R 0.34 TCGA-CK-4951-01 19 48908380 48908380 T A GRIN2D Silent p.S285S 0.33 TCGA-CK-4951-01 19 48965138 48965138 G A KCNJ14 Missense_Mutation p.V53I 0.25 tolerated(0.13) probably_damaging(0.997) TCGA-CK-4951-01 19 48965231 48965231 G A KCNJ14 Missense_Mutation p.V84M 0.24 deleterious(0.04) probably_damaging(0.947) TCGA-CK-4951-01 19 49012756 49012756 G - LMTK3 Frame_Shift_Del p.L155Wfs*8 0.23 TCGA-CK-4951-01 19 49116239 49116239 A T FAM83E Missense_Mutation p.Y131N 0.31 deleterious(0) probably_damaging(0.917) TCGA-CK-4951-01 19 49122549 49122549 G A SPHK2 5'UTR 0.38 TCGA-CK-4951-01 19 49123701 49123701 C T SPHK2 5'UTR 0.41 TCGA-CK-4951-01 19 49207539 49207539 C T FUT2 3'UTR 0.43 TCGA-CK-4951-01 19 49219128 49219128 C T MAMSTR Intron 0.35 TCGA-CK-4951-01 19 49253820 49253820 G A FUT1 Missense_Mutation p.A240V 0.53 tolerated(0.16) benign(0.17) TCGA-CK-4951-01 19 49391423 49391423 G A TULP2 Silent p.G244G 0.38 TCGA-CK-4951-01 19 49401091 49401091 C A TULP2 Intron 0.10 TCGA-CK-4951-01 19 49518354 49518354 C T RUVBL2 Missense_Mutation p.R400C 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 49538941 49538941 G - CGB1 Frame_Shift_Del p.R132Afs*? 0.21 TCGA-CK-4951-01 19 4954755 4954755 C T UHRF1 RNA 0.27 TCGA-CK-4951-01 19 4954780 4954780 C T UHRF1 RNA 0.26 TCGA-CK-4951-01 19 49621904 49621904 G A C19orf73 Missense_Mutation p.P126S 0.29 tolerated_low_confidence(0.24) unknown(0) TCGA-CK-4951-01 19 49669400 49669400 A G TRPM4 Silent p.A65A 0.24 TCGA-CK-4951-01 19 49714007 49714008 GT - TRPM4 Frame_Shift_Del p.W1124Gfs*5 0.28 TCGA-CK-4951-01 19 50016663 50016663 G A FCGRT Silent p.G2G 0.25 TCGA-CK-4951-01 19 50060140 50060140 C A NOSIP Nonsense_Mutation p.E177* 0.27 TCGA-CK-4951-01 19 50060141 50060141 C T NOSIP Silent p.L176L 0.26 TCGA-CK-4951-01 19 50098379 50098379 C T PRR12 Missense_Mutation p.P263S 0.32 possibly_damaging(0.803) TCGA-CK-4951-01 19 50100349 50100349 A G PRR12 Silent p.Q919Q 0.40 TCGA-CK-4951-01 19 50100458 50100458 G A PRR12 Missense_Mutation p.G956R 0.28 possibly_damaging(0.879) TCGA-CK-4951-01 19 50138795 50138795 C T RRAS 3'UTR 0.31 TCGA-CK-4951-01 19 50138797 50138797 C A RRAS 3'UTR 0.32 TCGA-CK-4951-01 19 50148372 50148372 C A SCAF1 Missense_Mutation p.S30Y 0.27 unknown(0) TCGA-CK-4951-01 19 50154411 50154411 C T SCAF1 Silent p.G255G 0.41 TCGA-CK-4951-01 19 50156070 50156070 G A SCAF1 Silent p.P808P 0.33 TCGA-CK-4951-01 19 50156212 50156212 T A SCAF1 Missense_Mutation p.S856T 0.33 unknown(0) TCGA-CK-4951-01 19 50162889 50162889 C T IRF3 Nonsense_Mutation p.W439* 0.35 TCGA-CK-4951-01 19 50189486 50189486 C T PRMT1 Missense_Mutation p.T299I 0.28 tolerated(1) benign(0.005) TCGA-CK-4951-01 19 50216315 50216315 A - CPT1C Frame_Shift_Del p.T742Rfs*57 0.24 TCGA-CK-4951-01 19 50270425 50270425 G A AP2A1 Missense_Mutation p.G12E 0.35 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 19 50302654 50302654 C T AP2A1 Missense_Mutation p.R346C 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 50312759 50312759 G A FUZ Missense_Mutation p.A189V 0.41 tolerated(1) benign(0.178) TCGA-CK-4951-01 19 50334614 50334614 G A MED25 Missense_Mutation p.V376M 0.29 tolerated(0.07) benign(0.409) TCGA-CK-4951-01 19 50726559 50726559 G A MYH14 Missense_Mutation p.A216T 0.38 deleterious(0.02) probably_damaging(0.949) TCGA-CK-4951-01 19 50831829 50831829 G A KCNC3 Missense_Mutation p.L171F 0.27 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 19 50905516 50905516 C T POLD1 Missense_Mutation p.A215V 0.24 tolerated(0.08) possibly_damaging(0.684) TCGA-CK-4951-01 19 50912085 50912085 T C POLD1 Missense_Mutation p.Y607H 0.29 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 19 50912138 50912138 C T POLD1 Silent p.P624P 0.12 TCGA-CK-4951-01 19 50931341 50931341 G A SPIB Silent p.L179L 0.30 TCGA-CK-4951-01 19 50983922 50983922 A G EMC10 Missense_Mutation p.T163A 0.33 tolerated(0.13) benign(0.133) TCGA-CK-4951-01 19 50985129 50985129 C - EMC10 Intron 0.41 TCGA-CK-4951-01 19 50985132 50985132 G T EMC10 Intron 0.39 TCGA-CK-4951-01 19 51013543 51013543 C A JOSD2 Missense_Mutation p.R49M 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-CK-4951-01 19 51017827 51017827 C T ASPDH 5'Flank 0.31 TCGA-CK-4951-01 19 51132664 51132664 C G SYT3 Missense_Mutation p.D390H 0.22 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 19 51132681 51132681 A T SYT3 Missense_Mutation p.F384Y 0.26 deleterious(0) possibly_damaging(0.522) TCGA-CK-4951-01 19 51132769 51132769 C T SYT3 Missense_Mutation p.V355M 0.33 deleterious(0) probably_damaging(0.984) TCGA-CK-4951-01 19 51165610 51165610 A G SHANK1 Missense_Mutation p.F2033S 0.28 unknown(0) TCGA-CK-4951-01 19 51172232 51172232 C T SHANK1 Silent p.P995P 0.34 TCGA-CK-4951-01 19 51217111 51217111 C T SHANK1 Missense_Mutation p.D246N 0.26 possibly_damaging(0.867) TCGA-CK-4951-01 19 51302176 51302176 C T C19orf48 5'UTR 0.35 TCGA-CK-4951-01 19 5144106 5144106 C T KDM4B Silent p.D893D 0.19 TCGA-CK-4951-01 19 51525736 51525736 G C KLK11 3'UTR 0.22 TCGA-CK-4951-01 19 51628500 51628500 G A SIGLEC9 Missense_Mutation p.R90Q 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 19 51827107 51827107 G A IGLON5 Missense_Mutation p.R117H 0.67 tolerated(0.09) possibly_damaging(0.829) TCGA-CK-4951-01 19 51840718 51840718 G A VSIG10L Silent p.R693R 0.28 TCGA-CK-4951-01 19 51958765 51958765 C T SIGLEC8 Missense_Mutation p.V320M 0.26 tolerated(0.11) benign(0.342) TCGA-CK-4951-01 19 5214396 5214396 G A PTPRS Silent p.C1530C 0.26 TCGA-CK-4951-01 19 5218804 5218804 G A PTPRS Missense_Mutation p.P1310L 0.27 deleterious(0.01) benign(0.002) TCGA-CK-4951-01 19 52443467 52443467 A G ZNF613 Silent p.S7S 0.29 TCGA-CK-4951-01 19 52448962 52448962 C T ZNF613 Missense_Mutation p.S609L 0.31 tolerated(0.17) benign(0.354) TCGA-CK-4951-01 19 52448989 52448989 A G ZNF613 Silent p.%3D 0.21 TCGA-CK-4951-01 19 52725474 52725474 A T PPP2R1A Silent p.I547I 0.33 TCGA-CK-4951-01 19 52938372 52938372 G A ZNF534 Missense_Mutation p.E74K 0.28 tolerated(0.09) possibly_damaging(0.811) TCGA-CK-4951-01 19 52955029 52955029 T C ZNF578 5'Flank 0.31 TCGA-CK-4951-01 19 53058145 53058145 C T ZNF808 Missense_Mutation p.T659I 0.26 deleterious(0.03) possibly_damaging(0.803) TCGA-CK-4951-01 19 53209467 53209467 G A ZNF611 Missense_Mutation p.H281Y 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-CK-4951-01 19 53770352 53770352 C T VN1R4 Silent p.V189V 0.31 TCGA-CK-4951-01 19 53794223 53794223 C - BIRC8 5'UTR 0.25 TCGA-CK-4951-01 19 53794246 53794246 G A BIRC8 5'UTR 0.30 TCGA-CK-4951-01 19 53794555 53794555 C T BIRC8 5'UTR 0.32 TCGA-CK-4951-01 19 53884510 53884510 T C ZNF525 Silent p.Y226Y 0.24 TCGA-CK-4951-01 19 541415 541415 G A CDC34 Missense_Mutation p.V192M 0.32 tolerated(0.05) benign(0.097) TCGA-CK-4951-01 19 54210785 54210785 C T MIR520C RNA 0.25 TCGA-CK-4951-01 19 54223426 54223426 A G MIR520D RNA 0.22 TCGA-CK-4951-01 19 54314457 54314457 G A NLRP12 Silent p.N152N 0.38 TCGA-CK-4951-01 19 54314460 54314460 G A NLRP12 Silent p.V151V 0.38 TCGA-CK-4951-01 19 54445332 54445332 G A CACNG7 Missense_Mutation p.A205T 0.29 tolerated(0.7) benign(0.006) TCGA-CK-4951-01 19 54445553 54445553 G A CACNG7 3'UTR 0.28 TCGA-CK-4951-01 19 54515445 54515445 G A CACNG6 3'UTR 0.23 TCGA-CK-4951-01 19 54567128 54567128 C T VSTM1 5'UTR 0.55 TCGA-CK-4951-01 19 54599215 54599215 A T OSCAR Missense_Mutation p.Y197N 0.49 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 19 54610123 54610123 G A NDUFA3 Missense_Mutation p.V57I 0.31 tolerated(0.1) benign(0.002) TCGA-CK-4951-01 19 54744960 54744960 G A LILRA6 Silent p.V234V 0.13 TCGA-CK-4951-01 19 54746393 54746393 G C LILRA6 Silent p.G16G 0.13 TCGA-CK-4951-01 19 54823879 54823879 G A LILRA5 Missense_Mutation p.H6Y 0.18 tolerated_low_confidence(0.06) benign(0.266) TCGA-CK-4951-01 19 54845193 54845193 G A LILRA4 Silent p.S433S 0.23 TCGA-CK-4951-01 19 54967210 54967210 C T LENG8 Missense_Mutation p.H364Y 0.23 deleterious(0.05) possibly_damaging(0.868) TCGA-CK-4951-01 19 54967816 54967816 C T LENG8 Missense_Mutation p.H483Y 0.37 tolerated(0.18) benign(0.011) TCGA-CK-4951-01 19 55281294 55281294 G A KIR2DL1 5'UTR 0.74 TCGA-CK-4951-01 19 55451369 55451369 C A NLRP7 Missense_Mutation p.W273L 0.27 tolerated(0.06) probably_damaging(0.966) TCGA-CK-4951-01 19 55481395 55481395 G A NLRP2 Silent p.S4S 0.31 TCGA-CK-4951-01 19 55508846 55508846 G A NLRP2 Missense_Mutation p.R1014Q 0.20 tolerated(1) benign(0.002) TCGA-CK-4951-01 19 55568042 55568042 A G RDH13 Missense_Mutation p.F107L 0.36 deleterious(0.05) possibly_damaging(0.822) TCGA-CK-4951-01 19 55672113 55672113 T C DNAAF3 Missense_Mutation p.T383A 0.26 tolerated(0.18) benign(0.02) TCGA-CK-4951-01 19 55677710 55677710 G A DNAAF3 Silent p.D71D 0.46 TCGA-CK-4951-01 19 55689644 55689644 G A SYT5 Missense_Mutation p.R58W 0.33 deleterious(0.01) possibly_damaging(0.757) TCGA-CK-4951-01 19 55758439 55758439 C T PPP6R1 Silent p.S11S 0.25 TCGA-CK-4951-01 19 55785812 55785812 G A HSPBP1 Silent p.R198R 0.48 TCGA-CK-4951-01 19 55815078 55815078 C T BRSK1 Silent p.H390H 0.26 TCGA-CK-4951-01 19 55824294 55824294 C T TMEM150B Missense_Mutation p.C212Y 0.21 tolerated(0.11) benign(0.174) TCGA-CK-4951-01 19 55824318 55824318 G A TMEM150B Missense_Mutation p.S204F 0.24 deleterious(0.03) probably_damaging(0.977) TCGA-CK-4951-01 19 55855188 55855188 G C SUV420H2 Missense_Mutation p.G176A 0.45 deleterious(0.02) possibly_damaging(0.671) TCGA-CK-4951-01 19 55873797 55873797 G A FAM71E2 Missense_Mutation p.S127L 0.25 deleterious(0) possibly_damaging(0.787) TCGA-CK-4951-01 19 55898923 55898923 G A RPL28 Intron 0.40 TCGA-CK-4951-01 19 55952092 55952092 T A SHISA7 Missense_Mutation p.T238S 0.47 tolerated(0.69) benign(0.004) TCGA-CK-4951-01 19 55994772 55994772 G A ZNF628 Missense_Mutation p.A738T 0.45 deleterious(0.05) unknown(0) TCGA-CK-4951-01 19 56011441 56011441 A T SSC5D Missense_Mutation p.Q655L 0.09 possibly_damaging(0.632) TCGA-CK-4951-01 19 56029880 56029880 C - SSC5D Frame_Shift_Del p.R1414Efs*7 0.31 TCGA-CK-4951-01 19 5604885 5604885 G A SAFB2 Silent p.V453V 0.20 TCGA-CK-4951-01 19 56090218 56090218 G A ZNF579 Missense_Mutation p.P263L 0.28 deleterious(0.02) probably_damaging(0.981) TCGA-CK-4951-01 19 56104924 56104924 C T FIZ1 Missense_Mutation p.R128H 0.28 deleterious(0) possibly_damaging(0.522) TCGA-CK-4951-01 19 56104936 56104936 C T FIZ1 Missense_Mutation p.R124H 0.24 tolerated(0.05) possibly_damaging(0.522) TCGA-CK-4951-01 19 56105009 56105009 C T FIZ1 Missense_Mutation p.V100I 0.33 deleterious(0.01) benign(0.312) TCGA-CK-4951-01 19 56113927 56113927 C T ZNF524 Missense_Mutation p.T150I 0.29 deleterious(0) possibly_damaging(0.849) TCGA-CK-4951-01 19 56113931 56113931 C T ZNF524 Silent p.F151F 0.31 TCGA-CK-4951-01 19 56164009 56164009 C T CCDC106 Missense_Mutation p.S247F 0.30 deleterious(0) probably_damaging(0.987) TCGA-CK-4951-01 19 56180092 56180092 C T U2AF2 Silent p.D293D 0.45 TCGA-CK-4951-01 19 56196799 56196799 C T EPN1 Missense_Mutation p.S200L 0.27 deleterious(0) unknown(0) TCGA-CK-4951-01 19 56203122 56203122 G A EPN1 Silent p.S341S 0.36 TCGA-CK-4951-01 19 56206296 56206296 G A EPN1 Missense_Mutation p.R576Q 0.30 tolerated(0.17) benign(0.194) TCGA-CK-4951-01 19 56206632 56206632 G A EPN1 Silent p.T633T 0.35 TCGA-CK-4951-01 19 5622634 5622634 G A SAFB2 Silent p.S31S 0.20 TCGA-CK-4951-01 19 5622642 5622642 G A SAFB2 Missense_Mutation p.R29W 0.25 deleterious(0) probably_damaging(0.976) TCGA-CK-4951-01 19 5623297 5623297 G A SAFB Silent p.G27G 0.27 TCGA-CK-4951-01 19 56244406 56244406 T - NLRP9 Frame_Shift_Del p.K264Rfs*12 0.26 TCGA-CK-4951-01 19 5641853 5641853 G A SAFB Missense_Mutation p.V148I 0.35 tolerated(0.4) benign(0.23) TCGA-CK-4951-01 19 56467129 56467129 T G NLRP8 Missense_Mutation p.S569A 0.27 tolerated(1) benign(0.001) TCGA-CK-4951-01 19 56487508 56487508 G C NLRP8 Missense_Mutation p.K905N 0.26 tolerated(0.73) benign(0.005) TCGA-CK-4951-01 19 56538410 56538410 G A NLRP5 Missense_Mutation p.D271N 0.30 tolerated(1) benign(0) TCGA-CK-4951-01 19 56565087 56565087 A T NLRP5 Missense_Mutation p.D1071V 0.32 deleterious(0) probably_damaging(0.936) TCGA-CK-4951-01 19 5661771 5661771 A G SAFB Missense_Mutation p.Y702C 0.20 deleterious(0.02) unknown(0) TCGA-CK-4951-01 19 5664104 5664104 G A SAFB Missense_Mutation p.R742H 0.28 deleterious(0.02) unknown(0) TCGA-CK-4951-01 19 5667366 5667366 G A SAFB Missense_Mutation p.R821H 0.27 deleterious(0) unknown(0) TCGA-CK-4951-01 19 56701513 56701513 G A ZSCAN5B Missense_Mutation p.R391C 0.34 tolerated(0.13) benign(0.059) TCGA-CK-4951-01 19 5678543 5678543 G A C19orf70 3'UTR 0.19 TCGA-CK-4951-01 19 5693563 5693563 C T LONP1 Silent p.E846E 0.27 TCGA-CK-4951-01 19 5693744 5693744 C T LONP1 Missense_Mutation p.R786Q 0.24 tolerated(0.28) benign(0.144) TCGA-CK-4951-01 19 5707832 5707832 G A LONP1 Missense_Mutation p.S313L 0.35 deleterious(0.01) possibly_damaging(0.686) TCGA-CK-4951-01 19 57081648 57081648 G A ZNF470 Splice_Site 0.25 TCGA-CK-4951-01 19 5719808 5719808 G A LONP1 Silent p.L112L 0.22 TCGA-CK-4951-01 19 57285999 57285999 C T ZIM2 3'UTR 0.31 TCGA-CK-4951-01 19 57327292 57327292 C T PEG3 Missense_Mutation p.A840T 0.34 tolerated(0.39) benign(0.02) TCGA-CK-4951-01 19 57335009 57335009 T C PEG3 Missense_Mutation p.T145A 0.26 deleterious(0.01) benign(0.004) TCGA-CK-4951-01 19 57642571 57642571 G A USP29 Missense_Mutation p.S843N 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-CK-4951-01 19 57642716 57642716 G A USP29 Silent p.L891L 0.30 TCGA-CK-4951-01 19 577944 577944 C T BSG Missense_Mutation p.H80Y 0.31 tolerated(0.06) probably_damaging(0.998) TCGA-CK-4951-01 19 5783805 5783805 G C PRR22 Silent p.G151G 0.28 TCGA-CK-4951-01 19 58038956 58038956 G A ZNF549 Silent p.A5A 0.20 TCGA-CK-4951-01 19 58083696 58083696 G T ZNF416 Missense_Mutation p.Q526K 0.36 deleterious(0) benign(0.029) TCGA-CK-4951-01 19 58090161 58090161 G T ZNF416 5'UTR 0.24 TCGA-CK-4951-01 19 58095758 58095758 G A ZIK1 Splice_Site p.X11_splice 0.33 TCGA-CK-4951-01 19 58101828 58101828 G A ZIK1 Missense_Mutation p.G217R 0.26 tolerated(0.78) benign(0.162) TCGA-CK-4951-01 19 58131972 58131972 G A ZNF134 Missense_Mutation p.S162N 0.40 tolerated(0.65) benign(0.002) TCGA-CK-4951-01 19 58153113 58153113 C G ZNF211 Missense_Mutation p.T485S 0.22 deleterious(0.05) probably_damaging(0.956) TCGA-CK-4951-01 19 58193489 58193489 G A ZNF551 5'UTR 0.31 TCGA-CK-4951-01 19 5843812 5843812 C T FUT3 Missense_Mutation p.E347K 0.26 tolerated(0.43) benign(0.059) TCGA-CK-4951-01 19 5843862 5843862 G A FUT3 Missense_Mutation p.S330F 0.30 tolerated(0.23) benign(0.002) TCGA-CK-4951-01 19 5844110 5844110 G A FUT3 Silent p.F247F 0.35 TCGA-CK-4951-01 19 58578313 58578313 C T ZNF135 Missense_Mutation p.T178M 0.18 deleterious(0.05) possibly_damaging(0.742) TCGA-CK-4951-01 19 58640525 58640525 C T ZNF329 Missense_Mutation p.D116N 0.29 tolerated(0.27) benign(0) TCGA-CK-4951-01 19 58773412 58773412 T C ZNF544 Silent p.V480V 0.16 TCGA-CK-4951-01 19 58868793 58868793 G A ZNF497 Missense_Mutation p.P70L 0.22 tolerated(0.08) benign(0.015) TCGA-CK-4951-01 19 58880347 58880347 G A ZNF837 Missense_Mutation p.P118L 0.25 tolerated(0.37) probably_damaging(0.994) TCGA-CK-4951-01 19 58880573 58880573 G A ZNF837 Missense_Mutation p.R43C 0.33 tolerated(0.21) benign(0) TCGA-CK-4951-01 19 58880626 58880626 C T ZNF837 Missense_Mutation p.R25Q 0.44 tolerated(0.42) benign(0) TCGA-CK-4951-01 19 5894842 5894842 C T NDUFA11 Intron 0.10 TCGA-CK-4951-01 19 5896519 5896519 G A NDUFA11 Silent p.D86D 0.27 TCGA-CK-4951-01 19 58967241 58967241 G A ZNF324B Silent p.E310E 0.33 TCGA-CK-4951-01 19 58982510 58982510 C T ZNF324 Silent p.G217G 0.33 TCGA-CK-4951-01 19 58991757 58991757 C T ZNF446 Silent p.R339R 0.34 TCGA-CK-4951-01 19 58991963 58991963 C T ZNF446 Missense_Mutation p.S408L 0.43 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 19 59010268 59010268 C T SLC27A5 Missense_Mutation p.V594M 0.25 deleterious(0.03) possibly_damaging(0.875) TCGA-CK-4951-01 19 59061961 59061961 C T TRIM28 3'UTR 0.64 TCGA-CK-4951-01 19 59063275 59063275 G A CHMP2A Missense_Mutation p.S180L 0.31 tolerated(0.32) benign(0.42) TCGA-CK-4951-01 19 59074405 59074405 C T MZF1 Silent p.V413V 0.15 TCGA-CK-4951-01 19 59074475 59074475 C T MZF1 Missense_Mutation p.G390D 0.26 deleterious(0) possibly_damaging(0.893) TCGA-CK-4951-01 19 59074482 59074482 C T MZF1 Missense_Mutation p.E388K 0.27 deleterious(0.03) benign(0.309) TCGA-CK-4951-01 19 59074570 59074570 G A MZF1 Silent p.C358C 0.25 TCGA-CK-4951-01 19 59082517 59082517 C T MZF1 Silent p.K80K 0.37 TCGA-CK-4951-01 19 615847 615847 C T HCN2 Silent p.G681G 0.35 TCGA-CK-4951-01 19 6165960 6165960 C T ACSBG2 Silent p.C224C 0.30 TCGA-CK-4951-01 19 619051 619051 G A POLRMT Silent p.V1071V 0.23 TCGA-CK-4951-01 19 619637 619637 G A POLRMT Silent p.G1005G 0.33 TCGA-CK-4951-01 19 623484 623484 G A POLRMT Silent p.P420P 0.31 TCGA-CK-4951-01 19 6429767 6429767 C T SLC25A41 Missense_Mutation p.A198T 0.27 deleterious(0.04) possibly_damaging(0.606) TCGA-CK-4951-01 19 648066 648066 G A RNF126 3'UTR 0.29 TCGA-CK-4951-01 19 648417 648417 G A RNF126 Silent p.C247C 0.29 TCGA-CK-4951-01 19 650261 650261 G A RNF126 Missense_Mutation p.P160L 0.32 deleterious(0.01) benign(0.403) TCGA-CK-4951-01 19 652858 652858 A G RNF126 Silent p.S34S 0.25 TCGA-CK-4951-01 19 6586143 6586143 C T CD70 Missense_Mutation p.R157H 0.30 deleterious(0.01) probably_damaging(0.954) TCGA-CK-4951-01 19 6694539 6694539 C T C3 Silent p.T1019T 0.24 TCGA-CK-4951-01 19 681742 681742 G A FSTL3 3'UTR 0.53 TCGA-CK-4951-01 19 6857190 6857190 G A VAV1 3'Flank 0.19 TCGA-CK-4951-01 19 6924745 6924745 C T EMR1 Silent p.C616C 0.42 TCGA-CK-4951-01 19 757769 757769 G A MISP Missense_Mutation p.D275N 0.28 tolerated(0.09) benign(0.167) TCGA-CK-4951-01 19 758064 758064 G T MISP Missense_Mutation p.G373V 0.46 tolerated(0.06) possibly_damaging(0.898) TCGA-CK-4951-01 19 7615219 7615219 C T PNPLA6 Missense_Mutation p.A626V 0.34 tolerated(1) benign(0.001) TCGA-CK-4951-01 19 7625624 7625624 G A PNPLA6 Missense_Mutation p.D1274N 0.20 tolerated(0.2) benign(0.043) TCGA-CK-4951-01 19 7670145 7670145 A G CAMSAP3 Missense_Mutation p.Y61C 0.26 deleterious(0) probably_damaging(0.987) TCGA-CK-4951-01 19 7671693 7671693 C T CAMSAP3 Missense_Mutation p.P218S 0.34 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 19 7687716 7687716 C T XAB2 Missense_Mutation p.V435M 0.22 tolerated(0.27) probably_damaging(0.983) TCGA-CK-4951-01 19 7697716 7697716 C T PCP2 Missense_Mutation p.A18T 0.33 tolerated(0.13) possibly_damaging(0.791) TCGA-CK-4951-01 19 7926833 7926833 C T EVI5L Missense_Mutation p.R525W 0.22 deleterious(0) probably_damaging(0.947) TCGA-CK-4951-01 19 7964517 7964517 C T LRRC8E Silent p.I370I 0.33 TCGA-CK-4951-01 19 7964850 7964850 C T LRRC8E Silent p.F481F 0.20 TCGA-CK-4951-01 19 7976377 7976377 C T MAP2K7 Silent p.V331V 0.36 TCGA-CK-4951-01 19 7992178 7992178 C T TIMM44 Missense_Mutation p.R418Q 0.31 deleterious(0) benign(0.013) TCGA-CK-4951-01 19 7992186 7992186 C A TIMM44 Missense_Mutation p.K415N 0.34 tolerated(0.06) benign(0.005) TCGA-CK-4951-01 19 810594 810594 C T PTBP1 Silent p.G505G 0.31 TCGA-CK-4951-01 19 8146281 8146281 G A FBN3 Nonsense_Mutation p.R2433* 0.25 TCGA-CK-4951-01 19 8146353 8146353 A G FBN3 Missense_Mutation p.C2409R 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 19 821564 821564 C T LPPR3 5'UTR 0.11 TCGA-CK-4951-01 19 8438815 8438815 C T ANGPTL4 3'UTR 0.50 TCGA-CK-4951-01 19 8555475 8555475 C T PRAM1 Intron 0.32 TCGA-CK-4951-01 19 8808524 8808524 G A ACTL9 Silent p.Y176Y 0.28 TCGA-CK-4951-01 19 8808665 8808665 C T ACTL9 Nonsense_Mutation p.W129* 0.29 TCGA-CK-4951-01 19 8808676 8808676 C T ACTL9 Missense_Mutation p.E126K 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-CK-4951-01 19 900116 900116 A G R3HDM4 Missense_Mutation p.F169S 0.25 deleterious(0) possibly_damaging(0.633) TCGA-CK-4951-01 19 9011377 9011377 A G MUC16 Silent p.H12952H 0.29 TCGA-CK-4951-01 19 9019299 9019299 G A MUC16 Missense_Mutation p.P12530S 0.34 benign(0.095) TCGA-CK-4951-01 19 9057821 9057821 C T MUC16 Silent p.L9875L 0.24 TCGA-CK-4951-01 19 9072185 9072185 C T MUC16 Silent p.L5087L 0.31 TCGA-CK-4951-01 19 9075100 9075100 C T MUC16 Missense_Mutation p.A4116T 0.24 unknown(0) TCGA-CK-4951-01 19 932685 932685 C T ARID3A Silent p.A212A 0.27 TCGA-CK-4951-01 19 9406479 9406479 T A ZNF699 Missense_Mutation p.K534M 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 19 9406480 9406480 T A ZNF699 Nonsense_Mutation p.K534* 0.41 TCGA-CK-4951-01 19 9676954 9676954 T C ZNF121 Missense_Mutation p.T279A 0.37 deleterious(0.04) benign(0.099) TCGA-CK-4951-01 19 9801424 9801424 T C ZNF812 Missense_Mutation p.K252R 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-CK-4951-01 19 992022 992022 C T WDR18 Silent p.S333S 0.43 TCGA-CK-4951-01 19 9921640 9921640 T A FBXL12 Nonsense_Mutation p.K305* 0.27 TCGA-CK-4951-01 1 100550827 100550827 T - SASS6 3'UTR 0.20 TCGA-CK-4951-01 1 10057273 10057273 C T RBP7 5'Flank 0.50 TCGA-CK-4951-01 1 101006223 101006223 C T GPR88 3'UTR 0.34 TCGA-CK-4951-01 1 101705200 101705200 G A S1PR1 Silent p.L220L 0.38 TCGA-CK-4951-01 1 10197233 10197233 G A UBE4B Missense_Mutation p.R778H 0.22 deleterious(0) possibly_damaging(0.557) TCGA-CK-4951-01 1 104114327 104114327 C T AMY2B Nonsense_Mutation p.R35* 0.27 TCGA-CK-4951-01 1 10510166 10510166 A - CORT 5'UTR 0.23 TCGA-CK-4951-01 1 10523500 10523500 A G DFFA Missense_Mutation p.S207P 0.29 tolerated(0.13) benign(0.02) TCGA-CK-4951-01 1 10699863 10699863 C T CASZ1 Silent p.T1472T 0.33 TCGA-CK-4951-01 1 107691180 107691180 G T NTNG1 5'UTR 0.30 TCGA-CK-4951-01 1 108507347 108507347 T G VAV3 Missense_Mutation p.N49H 0.26 deleterious(0) probably_damaging(0.982) TCGA-CK-4951-01 1 109143262 109143262 C T FAM102B Missense_Mutation p.A71V 0.25 tolerated(0.22) benign(0.004) TCGA-CK-4951-01 1 109260563 109260563 C T FNDC7 Silent p.L83L 0.25 TCGA-CK-4951-01 1 109260591 109260591 C T FNDC7 Missense_Mutation p.T92I 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-CK-4951-01 1 109342878 109342878 C T STXBP3 Missense_Mutation p.P496S 0.40 deleterious(0.02) probably_damaging(0.975) TCGA-CK-4951-01 1 109394640 109394640 G A AKNAD1 Missense_Mutation p.T216I 0.32 tolerated(0.06) benign(0.069) TCGA-CK-4951-01 1 109444458 109444458 G A GPSM2 Missense_Mutation p.A282T 0.42 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 109649221 109649221 C A C1orf194 Silent p.L113L 0.32 TCGA-CK-4951-01 1 109801428 109801428 G A CELSR2 Missense_Mutation p.D1229N 0.33 deleterious(0) possibly_damaging(0.887) TCGA-CK-4951-01 1 109823051 109823051 G T PSRC1 Missense_Mutation p.P322H 0.32 deleterious(0) probably_damaging(0.919) TCGA-CK-4951-01 1 109839474 109839474 C G MYBPHL Missense_Mutation p.A221P 0.29 deleterious(0) probably_damaging(0.962) TCGA-CK-4951-01 1 110172018 110172018 C T AMPD2 Silent p.L644L 0.27 TCGA-CK-4951-01 1 110173853 110173853 C T AMPD2 3'UTR 0.29 TCGA-CK-4951-01 1 110279758 110279758 C G GSTM3 Missense_Mutation p.D205H 0.29 deleterious(0.01) benign(0.37) TCGA-CK-4951-01 1 110282498 110282498 G A GSTM3 Silent p.F27F 0.19 TCGA-CK-4951-01 1 11083385 11083385 C T TARDBP 3'UTR 0.36 TCGA-CK-4951-01 1 11083439 11083439 G A TARDBP 3'UTR 0.34 TCGA-CK-4951-01 1 110883900 110883900 C A RBM15 Silent p.R625R 0.33 TCGA-CK-4951-01 1 111742380 111742380 T C DENND2D Silent p.P36P 0.24 TCGA-CK-4951-01 1 11190732 11190732 C T MTOR Missense_Mutation p.A1823T 0.29 tolerated(0.35) probably_damaging(0.989) TCGA-CK-4951-01 1 112269948 112269948 C T FAM212B Missense_Mutation p.G179E 0.25 deleterious(0.03) probably_damaging(0.984) TCGA-CK-4951-01 1 112999238 112999238 G A CTTNBP2NL Missense_Mutation p.R375Q 0.44 tolerated(0.6) benign(0.002) TCGA-CK-4951-01 1 113052048 113052048 G T WNT2B Missense_Mutation p.R55L 0.21 tolerated(0.38) benign(0.276) TCGA-CK-4951-01 1 113059807 113059807 G A WNT2B Missense_Mutation p.R249H 0.45 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 1 113059816 113059816 G A WNT2B Nonsense_Mutation p.W252* 0.44 TCGA-CK-4951-01 1 113232588 113232588 C T MOV10 Missense_Mutation p.A235V 0.20 tolerated(0.46) benign(0.002) TCGA-CK-4951-01 1 1132927 1132927 G A TTLL10 Silent p.P574P 0.24 TCGA-CK-4951-01 1 113643112 113643112 T C LRIG2 Splice_Site p.X438_splice 0.25 TCGA-CK-4951-01 1 1141837 1141837 G A TNFRSF18 Missense_Mutation p.L39F 0.31 tolerated_low_confidence(0.15) possibly_damaging(0.765) TCGA-CK-4951-01 1 114247387 114247387 A G PHTF1 Silent p.I568I 0.42 TCGA-CK-4951-01 1 114308939 114308939 G A RSBN1 Missense_Mutation p.A691V 0.08 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 1 114354592 114354592 G A RSBN1 Missense_Mutation p.P148L 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.851) TCGA-CK-4951-01 1 115128187 115128187 T A DENND2C 3'UTR 0.25 TCGA-CK-4951-01 1 115216331 115216331 A G AMPD1 Missense_Mutation p.F705L 0.24 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 1 115280176 115280176 G A CSDE1 Silent p.C152C 0.26 TCGA-CK-4951-01 1 1153996 1153996 G A SDF4 Nonsense_Mutation p.Q252* 0.31 TCGA-CK-4951-01 1 11580795 11580795 G A PTCHD2 Missense_Mutation p.R751H 0.38 tolerated(0.15) probably_damaging(0.942) TCGA-CK-4951-01 1 11591768 11591768 G A PTCHD2 Splice_Site p.X1125_splice 0.38 TCGA-CK-4951-01 1 116676075 116676075 T A MAB21L3 3'UTR 0.38 TCGA-CK-4951-01 1 116916048 116916048 C T AL136376.1 Missense_Mutation p.G62R 0.29 unknown(0) TCGA-CK-4951-01 1 116929928 116929928 G A ATP1A1 Missense_Mutation p.A68T 0.44 deleterious(0) possibly_damaging(0.655) TCGA-CK-4951-01 1 117156493 117156493 G A IGSF3 Silent p.G242G 0.42 TCGA-CK-4951-01 1 117487327 117487327 C T PTGFRN Missense_Mutation p.P149S 0.28 tolerated(0.49) benign(0.005) TCGA-CK-4951-01 1 117638895 117638895 G A TTF2 Missense_Mutation p.A1054T 0.31 deleterious(0.04) possibly_damaging(0.507) TCGA-CK-4951-01 1 118065734 118065734 T C MAN1A2 3'UTR 0.31 TCGA-CK-4951-01 1 11854460 11854460 G C MTHFR Silent p.V434V 0.30 TCGA-CK-4951-01 1 11866383 11866383 G A CLCN6 Missense_Mutation p.E22K 0.41 deleterious(0.02) benign(0.11) TCGA-CK-4951-01 1 120056850 120056850 T A HSD3B1 Missense_Mutation p.L235Q 0.17 tolerated(0.37) possibly_damaging(0.51) TCGA-CK-4951-01 1 12009883 12009883 A T PLOD1 Silent p.G74G 0.32 TCGA-CK-4951-01 1 120165283 120165283 C - ZNF697 3'UTR 0.30 TCGA-CK-4951-01 1 120478103 120478103 C T NOTCH2 Missense_Mutation p.G1216D 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 12090114 12090114 C T MIIP Missense_Mutation p.P292L 0.38 deleterious(0) possibly_damaging(0.876) TCGA-CK-4951-01 1 1229508 1229508 C T ACAP3 Silent p.R737R 0.21 TCGA-CK-4951-01 1 12320843 12320843 C T VPS13D Silent p.L402L 0.29 TCGA-CK-4951-01 1 12320848 12320848 A T VPS13D Silent p.A403A 0.28 TCGA-CK-4951-01 1 12368523 12368523 G A VPS13D Missense_Mutation p.D2159N 0.21 probably_damaging(0.99) TCGA-CK-4951-01 1 1238612 1238612 C G ACAP3 Missense_Mutation p.S52T 0.35 tolerated(0.97) benign(0) TCGA-CK-4951-01 1 12423232 12423232 G A VPS13D Missense_Mutation p.M3459I 0.30 possibly_damaging(0.888) TCGA-CK-4951-01 1 12569133 12569133 A G VPS13D 3'UTR 0.35 TCGA-CK-4951-01 1 1268050 1268050 A T TAS1R3 Missense_Mutation p.N380I 0.15 deleterious(0) possibly_damaging(0.793) TCGA-CK-4951-01 1 12726071 12726071 C T AADACL4 Silent p.D183D 0.35 TCGA-CK-4951-01 1 1284429 1284429 A T DVL1 Missense_Mutation p.I6N 0.14 deleterious(0) possibly_damaging(0.891) TCGA-CK-4951-01 1 1290269 1290269 C T MXRA8 Missense_Mutation p.D248N 0.24 tolerated(0.14) possibly_damaging(0.795) TCGA-CK-4951-01 1 1290473 1290473 C T MXRA8 Missense_Mutation p.A180T 0.31 tolerated(0.18) benign(0.005) TCGA-CK-4951-01 1 1330832 1330832 G C CCNL2 Missense_Mutation p.A179G 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-CK-4951-01 1 1354396 1354396 C T ANKRD65 3'UTR 0.39 TCGA-CK-4951-01 1 1354397 1354397 C T ANKRD65 3'UTR 0.39 TCGA-CK-4951-01 1 145075863 145075863 G A PDE4DIP 5'UTR 0.13 TCGA-CK-4951-01 1 145248870 145248870 A G NOTCH2NL Missense_Mutation p.Y5C 0.10 tolerated(0.11) possibly_damaging(0.863) TCGA-CK-4951-01 1 145282011 145282011 A G NOTCH2NL Missense_Mutation p.K231E 0.09 deleterious_low_confidence(0.02) benign(0.002) TCGA-CK-4951-01 1 145299751 145299751 C T NBPF10 Missense_Mutation p.A267V 0.09 possibly_damaging(0.761) TCGA-CK-4951-01 1 145441183 145441183 G A TXNIP Missense_Mutation p.V381M 0.32 deleterious(0.02) benign(0.086) TCGA-CK-4951-01 1 145515437 145515437 G A PEX11B 5'Flank 0.35 TCGA-CK-4951-01 1 145525110 145525110 C T ITGA10 Silent p.F15F 0.33 TCGA-CK-4951-01 1 145527928 145527928 G A ITGA10 Nonsense_Mutation p.W55* 0.29 TCGA-CK-4951-01 1 145533483 145533483 C T ITGA10 Missense_Mutation p.H456Y 0.40 deleterious(0) probably_damaging(0.938) TCGA-CK-4951-01 1 145534970 145534970 G A ITGA10 Missense_Mutation p.D625N 0.33 deleterious(0.01) benign(0.005) TCGA-CK-4951-01 1 145537735 145537736 AG - ITGA10 Splice_Site p.X861_splice 0.36 TCGA-CK-4951-01 1 145539758 145539758 G T ITGA10 Nonsense_Mutation p.G1064* 0.33 TCGA-CK-4951-01 1 145561682 145561682 C T ANKRD35 Missense_Mutation p.A457V 0.26 tolerated(0.07) benign(0.005) TCGA-CK-4951-01 1 145562527 145562527 C T ANKRD35 Missense_Mutation p.R739W 0.24 deleterious(0) benign(0.427) TCGA-CK-4951-01 1 147091373 147091373 C T BCL9 Missense_Mutation p.A471V 0.21 tolerated(0.09) probably_damaging(0.972) TCGA-CK-4951-01 1 147092672 147092672 C T BCL9 Missense_Mutation p.S904F 0.38 deleterious(0.02) probably_damaging(0.974) TCGA-CK-4951-01 1 147094194 147094194 A G BCL9 Missense_Mutation p.M1009V 0.27 deleterious(0) benign(0.354) TCGA-CK-4951-01 1 1477424 1477424 C A SSU72 3'UTR 0.26 TCGA-CK-4951-01 1 147955126 147955126 A G PPIAL4A Silent p.T73T 0.28 TCGA-CK-4951-01 1 149858174 149858174 T A HIST2H2BE Missense_Mutation p.K6I 0.35 deleterious_low_confidence(0) benign(0.031) TCGA-CK-4951-01 1 149858754 149858754 C T HIST2H2AC Missense_Mutation p.T77M 0.34 tolerated_low_confidence(0.08) possibly_damaging(0.854) TCGA-CK-4951-01 1 149871682 149871682 G A BOLA1 Missense_Mutation p.A24T 0.29 tolerated(0.28) benign(0.001) TCGA-CK-4951-01 1 149884981 149884981 C - SV2A Frame_Shift_Del p.E138Rfs*39 0.21 TCGA-CK-4951-01 1 149900831 149900831 C T MTMR11 3'UTR 0.17 TCGA-CK-4951-01 1 149900837 149900837 C T MTMR11 3'UTR 0.18 TCGA-CK-4951-01 1 149949373 149949373 C T OTUD7B Missense_Mutation p.D25N 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-CK-4951-01 1 150201481 150201481 C T ANP32E Silent p.L139L 0.33 TCGA-CK-4951-01 1 150238850 150238850 C T APH1A Intron 0.36 TCGA-CK-4951-01 1 150280539 150280539 G A MRPS21 Silent p.K47K 0.29 TCGA-CK-4951-01 1 150443948 150443948 C T RPRD2 Missense_Mutation p.P842S 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-4951-01 1 150463921 150463921 T A TARS2 Silent p.L188L 0.26 TCGA-CK-4951-01 1 150525443 150525443 T C ADAMTSL4 Missense_Mutation p.W50R 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 150525516 150525516 C G ADAMTSL4 Missense_Mutation p.P74R 0.28 tolerated(0.09) probably_damaging(0.984) TCGA-CK-4951-01 1 150598059 150598059 C T ENSA Intron 0.47 TCGA-CK-4951-01 1 150684044 150684044 A T HORMAD1 Missense_Mutation p.Y102N 0.32 deleterious(0) probably_damaging(0.931) TCGA-CK-4951-01 1 150730422 150730422 T - CTSS Frame_Shift_Del p.K54Rfs*3 0.25 TCGA-CK-4951-01 1 150936233 150936233 C T SETDB1 Intron 0.23 TCGA-CK-4951-01 1 151138185 151138185 G A LYSMD1 5'UTR 0.29 TCGA-CK-4951-01 1 151138584 151138584 G A SCNM1 5'UTR 0.33 TCGA-CK-4951-01 1 151239823 151239823 T A PSMD4 3'UTR 0.33 TCGA-CK-4951-01 1 151259878 151259878 T C ZNF687 Silent p.L371L 0.34 TCGA-CK-4951-01 1 151260551 151260551 C T ZNF687 Missense_Mutation p.S595L 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 1 151260678 151260678 G - ZNF687 Frame_Shift_Del p.A639Pfs*74 0.23 TCGA-CK-4951-01 1 151261125 151261125 A T ZNF687 Missense_Mutation p.N746I 0.23 deleterious(0.01) benign(0.258) TCGA-CK-4951-01 1 151261658 151261658 C T ZNF687 Silent p.C794C 0.25 TCGA-CK-4951-01 1 151262601 151262601 G A ZNF687 Missense_Mutation p.V990M 0.31 deleterious(0.04) benign(0.338) TCGA-CK-4951-01 1 151262632 151262632 G A ZNF687 Missense_Mutation p.R1000H 0.26 tolerated(0.09) probably_damaging(0.974) TCGA-CK-4951-01 1 151265381 151265381 T A PI4KB Missense_Mutation p.I812F 0.27 tolerated(0.06) benign(0.211) TCGA-CK-4951-01 1 151265387 151265387 G A PI4KB Missense_Mutation p.R810W 0.28 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 1 151274444 151274444 C T PI4KB Splice_Site p.X554_splice 0.44 TCGA-CK-4951-01 1 151316900 151316900 G A RFX5 Nonsense_Mutation p.Q156* 0.34 TCGA-CK-4951-01 1 151316920 151316920 C T RFX5 Missense_Mutation p.R149Q 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 151378836 151378836 G A POGZ Missense_Mutation p.A892V 0.25 tolerated(0.45) benign(0) TCGA-CK-4951-01 1 151554167 151554167 G A TUFT1 Missense_Mutation p.R386Q 0.44 deleterious(0) unknown(0) TCGA-CK-4951-01 1 151787678 151787679 - G RORC Frame_Shift_Ins p.G175Wfs*29 0.30 TCGA-CK-4951-01 1 151810386 151810386 G A C2CD4D 3'UTR 0.26 TCGA-CK-4951-01 1 152080988 152080993 CCTCCC TCTTCCT TCHH Frame_Shift_Ins p.R1567Kfs*12 0.41 TCGA-CK-4951-01 1 152081201 152081201 C G TCHH Missense_Mutation p.E1498Q 0.23 unknown(0) TCGA-CK-4951-01 1 152084033 152084033 C T TCHH Missense_Mutation p.E554K 0.27 unknown(0) TCGA-CK-4951-01 1 152084131 152084131 C T TCHH Missense_Mutation p.R521H 0.27 unknown(0) TCGA-CK-4951-01 1 152084894 152084894 G A TCHH Missense_Mutation p.R267W 0.34 unknown(0) TCGA-CK-4951-01 1 152085313 152085313 C T TCHH Missense_Mutation p.R127K 0.35 unknown(0) TCGA-CK-4951-01 1 152284508 152284508 T C FLG Missense_Mutation p.S952G 0.37 probably_damaging(0.996) TCGA-CK-4951-01 1 152488235 152488235 C T CRCT1 3'UTR 0.52 TCGA-CK-4951-01 1 152538604 152538604 T C LCE3E Silent p.V27V 0.19 TCGA-CK-4951-01 1 152671736 152671736 A G LCE2A 3'UTR 0.34 TCGA-CK-4951-01 1 152733026 152733026 G A KPRP Missense_Mutation p.R321H 0.29 deleterious(0.04) possibly_damaging(0.687) TCGA-CK-4951-01 1 152733511 152733511 G A KPRP Missense_Mutation p.A483T 0.29 deleterious(0.04) possibly_damaging(0.908) TCGA-CK-4951-01 1 152785033 152785033 T C LCE1B Silent p.C37C 0.32 TCGA-CK-4951-01 1 152785039 152785039 A T LCE1B Silent p.P39P 0.34 TCGA-CK-4951-01 1 153085073 153085073 G A SPRR2F Missense_Mutation p.P46L 0.26 unknown(0) TCGA-CK-4951-01 1 153314192 153314192 T A PGLYRP4 Missense_Mutation p.K179M 0.12 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 1 153363033 153363033 C T S100A8 Intron 0.37 TCGA-CK-4951-01 1 153517262 153517262 G T S100A4 Nonsense_Mutation p.C3* 0.31 TCGA-CK-4951-01 1 153740269 153740269 T A INTS3 Missense_Mutation p.L737H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 1 153751909 153751909 A T SLC27A3 Missense_Mutation p.N659I 0.24 tolerated(0.29) benign(0.032) TCGA-CK-4951-01 1 153785869 153785869 C T GATAD2B Missense_Mutation p.D426N 0.26 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 153906651 153906651 G A DENND4B Silent p.A967A 0.25 TCGA-CK-4951-01 1 153935072 153935072 G A SLC39A1 Silent p.L40L 0.31 TCGA-CK-4951-01 1 153949759 153949759 G C JTB 5'UTR 0.29 TCGA-CK-4951-01 1 153984844 153984844 C G NUP210L Silent p.V1552V 0.29 TCGA-CK-4951-01 1 153984845 153984845 A T NUP210L Missense_Mutation p.V1552E 0.29 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 1 154302887 154302887 C T ATP8B2 Missense_Mutation p.A49V 0.35 tolerated(1) benign(0.001) TCGA-CK-4951-01 1 154574985 154574985 C G ADAR Missense_Mutation p.E45Q 0.34 tolerated(0.15) benign(0.142) TCGA-CK-4951-01 1 154931275 154931275 C T PYGO2 Missense_Mutation p.V401M 0.41 deleterious(0.01) possibly_damaging(0.861) TCGA-CK-4951-01 1 154940681 154940681 G A SHC1 Missense_Mutation p.P268L 0.08 deleterious(0.03) benign(0.236) TCGA-CK-4951-01 1 155012002 155012002 A C DCST1 Missense_Mutation p.Y129S 0.28 deleterious(0) probably_damaging(0.971) TCGA-CK-4951-01 1 155106251 155106251 C T EFNA1 Missense_Mutation p.A167V 0.25 tolerated(0.12) benign(0.028) TCGA-CK-4951-01 1 155145719 155145719 C T KRTCAP2 Nonsense_Mutation p.W20* 0.23 TCGA-CK-4951-01 1 155162683 155162683 G T MUC1 5'UTR 0.32 TCGA-CK-4951-01 1 155166968 155166968 G A THBS3 Nonsense_Mutation p.R846* 0.41 TCGA-CK-4951-01 1 155257699 155257699 G A HCN3 Silent p.P590P 0.15 TCGA-CK-4951-01 1 155290372 155290372 C T FDPS Missense_Mutation p.A411V 0.27 tolerated(0.35) benign(0.122) TCGA-CK-4951-01 1 155291869 155291869 G C RUSC1 Missense_Mutation p.C102S 0.50 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-CK-4951-01 1 155292606 155292606 C T RUSC1 Missense_Mutation p.P348S 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-4951-01 1 155292746 155292746 G T RUSC1 Missense_Mutation p.W394C 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-4951-01 1 155365275 155365275 T A ASH1L Silent p.G2026G 0.21 TCGA-CK-4951-01 1 155722250 155722250 A G GON4L Missense_Mutation p.Y1991H 0.33 tolerated_low_confidence(0.56) benign(0.065) TCGA-CK-4951-01 1 1558784 1558784 G A MIB2 Silent p.R99R 0.34 TCGA-CK-4951-01 1 155920669 155920669 C T ARHGEF2 Missense_Mutation p.R885H 0.18 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-CK-4951-01 1 155924710 155924710 T A ARHGEF2 Missense_Mutation p.Y589F 0.26 tolerated(0.63) benign(0.276) TCGA-CK-4951-01 1 156020202 156020202 A T UBQLN4 Missense_Mutation p.D207E 0.20 tolerated(0.1) benign(0.096) TCGA-CK-4951-01 1 156020220 156020220 C T UBQLN4 Silent p.E201E 0.22 TCGA-CK-4951-01 1 156046547 156046547 G A MEX3A Missense_Mutation p.R461W 0.33 deleterious(0.02) possibly_damaging(0.559) TCGA-CK-4951-01 1 156051616 156051616 C T MEX3A Silent p.A58A 0.45 TCGA-CK-4951-01 1 156105793 156105793 C A LMNA Silent p.A346A 0.30 TCGA-CK-4951-01 1 156182958 156182958 C T PMF1 Missense_Mutation p.A51V 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.879) TCGA-CK-4951-01 1 156215679 156215679 G A PAQR6 5'UTR 0.21 TCGA-CK-4951-01 1 156230308 156230308 C T SMG5 Silent p.P739P 0.40 TCGA-CK-4951-01 1 156255189 156255189 G T TMEM79 Missense_Mutation p.A58S 0.33 tolerated(0.05) benign(0.053) TCGA-CK-4951-01 1 156377710 156377710 T A C1orf61 Missense_Mutation p.T77S 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.801) TCGA-CK-4951-01 1 156499988 156499988 C T IQGAP3 Missense_Mutation p.R1438Q 0.32 deleterious(0.04) benign(0.133) TCGA-CK-4951-01 1 1565023 1565023 C T MIB2 Silent p.C971C 0.29 TCGA-CK-4951-01 1 15653608 15653608 G A FHAD1 Silent p.P114P 0.33 TCGA-CK-4951-01 1 156616725 156616725 C T BCAN Missense_Mutation p.P75L 0.39 deleterious(0) probably_damaging(0.924) TCGA-CK-4951-01 1 156616887 156616887 C T BCAN Missense_Mutation p.P129L 0.32 tolerated(0.14) benign(0.075) TCGA-CK-4951-01 1 156640235 156640235 C - NES Frame_Shift_Del p.V1249Cfs*11 0.27 TCGA-CK-4951-01 1 156715100 156715100 C T HDGF Silent p.G67G 0.34 TCGA-CK-4951-01 1 156756767 156756767 T A PRCC Missense_Mutation p.I295N 0.45 tolerated(0.52) benign(0.067) TCGA-CK-4951-01 1 156767104 156767104 A - PRCC Frame_Shift_Del p.K454Nfs*18 0.25 TCGA-CK-4951-01 1 156810808 156810808 G A INSRR Missense_Mutation p.R1251W 0.29 deleterious(0.01) possibly_damaging(0.708) TCGA-CK-4951-01 1 156813966 156813966 C T INSRR Splice_Site p.X948_splice 0.47 TCGA-CK-4951-01 1 156814949 156814949 C T INSRR Missense_Mutation p.D786N 0.40 deleterious(0.04) probably_damaging(0.983) TCGA-CK-4951-01 1 156823858 156823858 C T INSRR Missense_Mutation p.R108H 0.29 tolerated(0.16) benign(0.004) TCGA-CK-4951-01 1 158054342 158054342 G A KIRREL Silent p.T161T 0.34 TCGA-CK-4951-01 1 15808830 15808830 G A CELA2B Missense_Mutation p.V100I 0.29 tolerated(0.97) benign(0.033) TCGA-CK-4951-01 1 15831238 15831238 A G CASP9 Missense_Mutation p.F246L 0.11 deleterious(0.01) benign(0.424) TCGA-CK-4951-01 1 15855700 15855700 C A DNAJC16 Missense_Mutation p.L34I 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 1 158735988 158735988 A C OR6N1 Missense_Mutation p.L162W 0.37 tolerated(0.5) probably_damaging(1) TCGA-CK-4951-01 1 159035754 159035754 C T AIM2 Silent p.T254T 0.33 TCGA-CK-4951-01 1 159684281 159684281 C T CRP 5'UTR 0.44 TCGA-CK-4951-01 1 159898714 159898714 C - IGSF9 Frame_Shift_Del p.D822Ifs*33 0.22 TCGA-CK-4951-01 1 160123004 160123004 A T ATP1A4 Missense_Mutation p.D66V 0.37 deleterious(0) benign(0.259) TCGA-CK-4951-01 1 160156515 160156515 G C ATP1A4 3'UTR 0.27 TCGA-CK-4951-01 1 160260375 160260375 C T COPA Silent p.R1183R 0.32 TCGA-CK-4951-01 1 160389207 160389207 G A VANGL2 Missense_Mutation p.R203H 0.30 deleterious(0) probably_damaging(0.966) TCGA-CK-4951-01 1 16054294 16054294 G A PLEKHM2 Missense_Mutation p.S576N 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-CK-4951-01 1 16058396 16058396 C T PLEKHM2 Silent p.C826C 0.15 TCGA-CK-4951-01 1 16060369 16060369 C T PLEKHM2 Silent p.S1000S 0.36 TCGA-CK-4951-01 1 16065984 16065984 G A SLC25A34 3'UTR 0.40 TCGA-CK-4951-01 1 160783515 160783515 G A LY9 Missense_Mutation p.G182R 0.44 tolerated(0.68) possibly_damaging(0.524) TCGA-CK-4951-01 1 160783577 160783577 T C LY9 Silent p.N202N 0.39 TCGA-CK-4951-01 1 160783591 160783591 T C LY9 Missense_Mutation p.L207P 0.43 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 1 161007643 161007643 C T TSTD1 Intron 0.23 TCGA-CK-4951-01 1 161008402 161008402 G A TSTD1 Silent p.F24F 0.36 TCGA-CK-4951-01 1 161008739 161008739 G A TSTD1 5'UTR 0.23 TCGA-CK-4951-01 1 161017600 161017600 T C ARHGAP30 Missense_Mutation p.R1071G 0.44 tolerated_low_confidence(0.25) benign(0.008) TCGA-CK-4951-01 1 161094135 161094136 TG - DEDD Frame_Shift_Del p.H39Qfs*12 0.21 TCGA-CK-4951-01 1 161138324 161138325 - A PPOX Frame_Shift_Ins p.T193Nfs*30 0.28 TCGA-CK-4951-01 1 161176322 161176322 G A NDUFS2 Missense_Mutation p.D110N 0.30 deleterious(0.01) possibly_damaging(0.846) TCGA-CK-4951-01 1 161179978 161179978 G A NDUFS2 Silent p.E260E 0.31 TCGA-CK-4951-01 1 161559608 161559608 T A RP11-25K21.6 Intron 0.27 TCGA-CK-4951-01 1 161681161 161681161 G A FCRLA Silent p.V155V 0.28 TCGA-CK-4951-01 1 161681171 161681171 G A FCRLA Missense_Mutation p.A159T 0.29 tolerated(0.16) benign(0.052) TCGA-CK-4951-01 1 161726641 161726641 T C DUSP12 Silent p.C309C 0.45 TCGA-CK-4951-01 1 161726670 161726670 T C DUSP12 Missense_Mutation p.I319T 0.37 deleterious(0) possibly_damaging(0.517) TCGA-CK-4951-01 1 162039980 162039980 A G NOS1AP Missense_Mutation p.T5A 0.21 deleterious(0.04) benign(0.071) TCGA-CK-4951-01 1 162366820 162366820 G T SH2D1B 3'UTR 0.56 TCGA-CK-4951-01 1 162381907 162381907 G A SH2D1B 5'UTR 0.62 TCGA-CK-4951-01 1 16259442 16259442 C T SPEN Missense_Mutation p.P2236L 0.13 benign(0.075) TCGA-CK-4951-01 1 162724605 162724605 G A DDR2 Missense_Mutation p.G126D 0.32 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 163131738 163131738 G A RGS5 Missense_Mutation p.R62C 0.21 deleterious(0.03) benign(0.004) TCGA-CK-4951-01 1 16344516 16344516 G T HSPB7 5'UTR 0.47 TCGA-CK-4951-01 1 16385124 16385124 G A FAM131C Silent p.S217S 0.22 TCGA-CK-4951-01 1 16461550 16461550 C G EPHA2 Silent p.V521V 0.56 TCGA-CK-4951-01 1 1647881 1647881 C T CDK11A Missense_Mutation p.R131H 0.27 tolerated_low_confidence(0.66) probably_damaging(0.999) TCGA-CK-4951-01 1 166039641 166039641 C T FAM78B Missense_Mutation p.R208Q 0.38 deleterious(0) possibly_damaging(0.755) TCGA-CK-4951-01 1 166818845 166818845 G A POGK Silent p.Q343Q 0.35 TCGA-CK-4951-01 1 166819257 166819257 G A POGK Missense_Mutation p.V481M 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-CK-4951-01 1 16946376 16946376 G A RP5-1182A14.5 3'Flank 0.12 TCGA-CK-4951-01 1 169484724 169484724 C A F5 Silent p.V2162V 0.40 TCGA-CK-4951-01 1 169505821 169505821 C T F5 Missense_Mutation p.D1632N 0.25 deleterious(0.04) probably_damaging(0.99) TCGA-CK-4951-01 1 169510833 169510833 G A F5 Silent p.S1165S 0.30 TCGA-CK-4951-01 1 169578911 169578911 C T SELP Silent p.P388P 0.43 TCGA-CK-4951-01 1 169588424 169588424 A T SELP Missense_Mutation p.F13I 0.38 tolerated(0.2) benign(0.007) TCGA-CK-4951-01 1 169670702 169670702 T - SELL Frame_Shift_Del p.G374Afs*8 0.28 TCGA-CK-4951-01 1 171168606 171168606 G C FMO2 Missense_Mutation p.E202D 0.30 deleterious(0.05) benign(0.302) TCGA-CK-4951-01 1 171486738 171486738 T A PRRC2C Missense_Mutation p.C177S 0.28 unknown(0) TCGA-CK-4951-01 1 171810933 171810933 C T DNM3 Missense_Mutation p.S46L 0.40 deleterious(0) probably_damaging(0.974) TCGA-CK-4951-01 1 172100388 172100388 T C DNM3 Missense_Mutation p.V540A 0.26 deleterious(0.02) probably_damaging(0.955) TCGA-CK-4951-01 1 17256930 17256930 C T CROCC Silent p.A230A 0.26 TCGA-CK-4951-01 1 17322449 17322449 C T ATP13A2 Intron 0.20 TCGA-CK-4951-01 1 17323525 17323525 C T ATP13A2 Silent p.V395V 0.28 TCGA-CK-4951-01 1 173931120 173931120 G A RC3H1 Missense_Mutation p.R649C 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-CK-4951-01 1 17401422 17401422 C T PADI2 Missense_Mutation p.S493N 0.37 deleterious(0.01) probably_damaging(0.969) TCGA-CK-4951-01 1 174983770 174983770 G A MRPS14 3'UTR 0.41 TCGA-CK-4951-01 1 17586180 17586180 G A PADI3 Missense_Mutation p.R67Q 0.40 tolerated(0.08) probably_damaging(0.992) TCGA-CK-4951-01 1 17596827 17596827 T C PADI3 Missense_Mutation p.V251A 0.16 deleterious(0.03) possibly_damaging(0.79) TCGA-CK-4951-01 1 176992561 176992561 G A ASTN1 Missense_Mutation p.H473Y 0.34 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 1 178834881 178834881 G A ANGPTL1 Silent p.L11L 0.22 TCGA-CK-4951-01 1 179834443 179834443 G A TOR1AIP2 Intron 0.25 TCGA-CK-4951-01 1 179851769 179851769 G A TOR1AIP1 Silent p.A44A 0.41 TCGA-CK-4951-01 1 180065174 180065174 C T CEP350 Missense_Mutation p.A2974V 0.31 benign(0.034) TCGA-CK-4951-01 1 180240846 180240846 G A LHX4 Intron 0.35 TCGA-CK-4951-01 1 181058073 181058073 G A IER5 Missense_Mutation p.S12N 0.18 tolerated(0.13) possibly_damaging(0.499) TCGA-CK-4951-01 1 182569593 182569593 G A RGS16 Missense_Mutation p.T148I 0.44 deleterious(0.03) possibly_damaging(0.558) TCGA-CK-4951-01 1 183096414 183096414 C T LAMC1 Missense_Mutation p.R1000C 0.47 deleterious(0.01) possibly_damaging(0.846) TCGA-CK-4951-01 1 183106955 183106955 C T LAMC1 Missense_Mutation p.A1489V 0.14 tolerated(0.07) probably_damaging(0.998) TCGA-CK-4951-01 1 183387379 183387379 G A NMNAT2 Silent p.H8H 0.29 TCGA-CK-4951-01 1 183511430 183511430 T C SMG7 Silent p.V545V 0.22 TCGA-CK-4951-01 1 183514238 183514238 C T SMG7 Nonsense_Mutation p.Q675* 0.40 TCGA-CK-4951-01 1 183938580 183938580 C T COLGALT2 Missense_Mutation p.V219I 0.31 tolerated(0.54) benign(0) TCGA-CK-4951-01 1 184041350 184041350 C T TSEN15 Missense_Mutation p.S138F 0.08 deleterious(0.04) probably_damaging(0.995) TCGA-CK-4951-01 1 184677350 184677350 A - EDEM3 Frame_Shift_Del p.F658Lfs*4 0.27 TCGA-CK-4951-01 1 185891536 185891536 T G HMCN1 Missense_Mutation p.V309G 0.32 probably_damaging(0.927) TCGA-CK-4951-01 1 186008936 186008936 C T HMCN1 Silent p.A2035A 0.33 TCGA-CK-4951-01 1 186306236 186306236 G A TPR Missense_Mutation p.S1472L 0.17 benign(0.307) TCGA-CK-4951-01 1 186901931 186901931 T A PLA2G4A Missense_Mutation p.F199I 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 1 186916069 186916069 G A PLA2G4A Missense_Mutation p.G414S 0.27 tolerated(0.16) benign(0.05) TCGA-CK-4951-01 1 18692003 18692003 G A IGSF21 Missense_Mutation p.R276H 0.24 deleterious(0.01) probably_damaging(0.926) TCGA-CK-4951-01 1 18809197 18809197 G C KLHDC7A Silent p.P574P 0.41 TCGA-CK-4951-01 1 19419352 19419352 C T UBR4 Silent p.R4724R 0.11 TCGA-CK-4951-01 1 19439250 19439250 G A UBR4 Missense_Mutation p.R3857C 0.25 probably_damaging(0.973) TCGA-CK-4951-01 1 19600494 19600494 C T AKR7L 5'UTR 0.40 TCGA-CK-4951-01 1 19609177 19609177 A G AKR7A3 3'UTR 0.20 TCGA-CK-4951-01 1 196197217 196197217 T A KCNT2 3'Flank 0.20 TCGA-CK-4951-01 1 196642996 196642996 G A CFH Missense_Mutation p.C85Y 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 196670472 196670472 G A CFH Intron 0.26 TCGA-CK-4951-01 1 197168890 197168890 T - ZBTB41 Frame_Shift_Del p.K238Nfs*4 0.24 TCGA-CK-4951-01 1 197390518 197390518 G A CRB1 Missense_Mutation p.M520I 0.19 tolerated(0.07) benign(0.008) TCGA-CK-4951-01 1 197403868 197403868 G A CRB1 Missense_Mutation p.G959S 0.37 tolerated(1) benign(0.001) TCGA-CK-4951-01 1 197886747 197886747 C T LHX9 5'UTR 0.34 TCGA-CK-4951-01 1 198719682 198719682 A T PTPRC Missense_Mutation p.D1045V 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 19981819 19981819 C T MINOS1-NBL1 Missense_Mutation p.A58V 0.36 tolerated(0.57) benign(0.435) TCGA-CK-4951-01 1 19992390 19992390 C T HTR6 Silent p.I48I 0.30 TCGA-CK-4951-01 1 19992844 19992844 C T HTR6 Missense_Mutation p.P200S 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 200143242 200143242 T C NR5A2 Silent p.S510S 0.10 TCGA-CK-4951-01 1 200377916 200377916 T C ZNF281 Silent p.R306R 0.26 TCGA-CK-4951-01 1 200868689 200868689 C T C1orf106 Silent p.C48C 0.38 TCGA-CK-4951-01 1 201052359 201052359 C T CACNA1S Missense_Mutation p.V442I 0.25 deleterious(0.03) benign(0.172) TCGA-CK-4951-01 1 201293614 201293614 C T PKP1 Missense_Mutation p.A601V 0.36 deleterious(0.01) possibly_damaging(0.804) TCGA-CK-4951-01 1 201383708 201383708 G A TNNI1 Missense_Mutation p.R43C 0.40 deleterious(0.02) benign(0.047) TCGA-CK-4951-01 1 201845235 201845235 G A IPO9 3'UTR 0.28 TCGA-CK-4951-01 1 201858162 201858162 G A SHISA4 Missense_Mutation p.A14T 0.31 tolerated_low_confidence(0.15) benign(0.007) TCGA-CK-4951-01 1 201983096 201983096 G A ELF3 Nonsense_Mutation p.W315* 0.28 TCGA-CK-4951-01 1 202318082 202318082 C T PPP1R12B Missense_Mutation p.P35S 0.27 tolerated(0.11) benign(0.001) TCGA-CK-4951-01 1 202403840 202403840 A G PPP1R12B Missense_Mutation p.T400A 0.35 tolerated(0.12) benign(0) TCGA-CK-4951-01 1 202911318 202911318 G A ADIPOR1 Silent p.G278G 0.26 TCGA-CK-4951-01 1 203008197 203008197 G A PPFIA4 Missense_Mutation p.D21N 0.31 tolerated(0.07) benign(0.361) TCGA-CK-4951-01 1 203018884 203018884 C T PPFIA4 5'Flank 0.17 TCGA-CK-4951-01 1 203135040 203135040 C T ADORA1 3'UTR 0.24 TCGA-CK-4951-01 1 203734494 203734494 G A LAX1 5'UTR 0.36 TCGA-CK-4951-01 1 204091466 204091466 C - SOX13 Frame_Shift_Del p.S324Afs*82 0.29 TCGA-CK-4951-01 1 204095231 204095231 G T SOX13 Missense_Mutation p.S613I 0.22 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 1 204124283 204124283 A T REN Missense_Mutation p.L361Q 0.29 deleterious(0.03) benign(0.011) TCGA-CK-4951-01 1 204125315 204125315 C T REN Silent p.R317R 0.37 TCGA-CK-4951-01 1 204168231 204168231 C T GOLT1A Intron 0.52 TCGA-CK-4951-01 1 204226741 204226741 C T PLEKHA6 Missense_Mutation p.V422I 0.35 tolerated(0.17) benign(0.001) TCGA-CK-4951-01 1 204512071 204512071 A T MDM4 Missense_Mutation p.Q224L 0.32 deleterious(0) possibly_damaging(0.77) TCGA-CK-4951-01 1 205030395 205030395 C T CNTN2 Missense_Mutation p.R274C 0.17 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 1 205038966 205038966 G A CNTN2 Silent p.R736R 0.28 TCGA-CK-4951-01 1 205038967 205038967 G A CNTN2 Missense_Mutation p.E737K 0.29 tolerated(0.08) possibly_damaging(0.803) TCGA-CK-4951-01 1 205132954 205132954 T A DSTYK Missense_Mutation p.D485V 0.11 deleterious(0.01) possibly_damaging(0.459) TCGA-CK-4951-01 1 20518887 20518887 G - UBXN10 3'UTR 0.21 TCGA-CK-4951-01 1 205238508 205238508 C T TMCC2 Missense_Mutation p.A393V 0.21 tolerated(0.26) possibly_damaging(0.609) TCGA-CK-4951-01 1 205238899 205238899 A G TMCC2 Silent p.L523L 0.40 TCGA-CK-4951-01 1 205272799 205272799 G A NUAK2 Nonsense_Mutation p.Q556* 0.39 TCGA-CK-4951-01 1 205273217 205273217 T C NUAK2 Silent p.S416S 0.28 TCGA-CK-4951-01 1 205275334 205275334 C T NUAK2 Silent p.K224K 0.25 TCGA-CK-4951-01 1 205306691 205306691 C A KLHDC8A Nonsense_Mutation p.E297* 0.32 TCGA-CK-4951-01 1 205312614 205312614 T A KLHDC8A Missense_Mutation p.D40V 0.32 deleterious(0) probably_damaging(0.945) TCGA-CK-4951-01 1 205312711 205312711 C T KLHDC8A Missense_Mutation p.D8N 0.32 tolerated(0.17) benign(0.063) TCGA-CK-4951-01 1 205538190 205538190 C T MFSD4 5'UTR 0.56 TCGA-CK-4951-01 1 205633613 205633613 C T SLC45A3 Missense_Mutation p.G58S 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-CK-4951-01 1 205633614 205633614 C T SLC45A3 Silent p.L57L 0.27 TCGA-CK-4951-01 1 205744008 205744008 C T RAB7L1 Missense_Mutation p.R26Q 0.32 deleterious(0.02) probably_damaging(0.98) TCGA-CK-4951-01 1 205899084 205899084 G A SLC26A9 Missense_Mutation p.S218L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 1 206769151 206769151 G A EIF2D Silent p.T475T 0.23 TCGA-CK-4951-01 1 206903353 206903353 G A MAPKAPK2 Missense_Mutation p.A201T 0.30 tolerated(0.1) benign(0.111) TCGA-CK-4951-01 1 206905513 206905513 C T MAPKAPK2 Intron 0.26 TCGA-CK-4951-01 1 207139144 207139144 G A FCAMR Missense_Mutation p.L77F 0.35 tolerated(0.24) possibly_damaging(0.568) TCGA-CK-4951-01 1 207238489 207238489 C A PFKFB2 Missense_Mutation p.P206T 0.29 probably_damaging(1) TCGA-CK-4951-01 1 207789972 207789972 T A CR1 Silent p.T2238T 0.28 TCGA-CK-4951-01 1 208204944 208204944 T C PLXNA2 Missense_Mutation p.K1739R 0.32 deleterious(0) possibly_damaging(0.782) TCGA-CK-4951-01 1 208218036 208218036 C T PLXNA2 Missense_Mutation p.D1231N 0.42 tolerated(0.12) probably_damaging(0.971) TCGA-CK-4951-01 1 209950753 209950753 G A TRAF3IP3 Silent p.E370E 0.35 TCGA-CK-4951-01 1 210014266 210014267 - C DIEXF Frame_Shift_Ins p.L453Pfs*18 0.20 TCGA-CK-4951-01 1 210857201 210857201 C T KCNH1 Missense_Mutation p.V798I 0.33 tolerated_low_confidence(0.44) benign(0.001) TCGA-CK-4951-01 1 211451507 211451507 A - RCOR3 Frame_Shift_Del p.T191Lfs*7 0.20 TCGA-CK-4951-01 1 211654625 211654625 G A RD3 Missense_Mutation p.R45W 0.35 tolerated(0.08) benign(0.004) TCGA-CK-4951-01 1 211846826 211846826 G A NEK2 Missense_Mutation p.P185L 0.31 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 1 212521765 212521765 G A PPP2R5A Missense_Mutation p.E267K 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 1 212799348 212799348 C T FAM71A Silent p.L377L 0.35 TCGA-CK-4951-01 1 212799352 212799352 C T FAM71A Missense_Mutation p.T378I 0.33 deleterious(0) benign(0.438) TCGA-CK-4951-01 1 212799707 212799707 G A FAM71A Silent p.T496T 0.22 TCGA-CK-4951-01 1 212799914 212799914 C T FAM71A Silent p.I565I 0.23 TCGA-CK-4951-01 1 214819438 214819438 T A CENPF Silent p.L2175L 0.33 TCGA-CK-4951-01 1 215751416 215751416 C A KCTD3 Missense_Mutation p.P130H 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-CK-4951-01 1 216073547 216073547 A T USH2A Missense_Mutation p.N2488K 0.35 benign(0.082) TCGA-CK-4951-01 1 2161097 2161097 G A SKI Missense_Mutation p.A298T 0.44 tolerated(0.26) probably_damaging(0.974) TCGA-CK-4951-01 1 216166366 216166366 C T USH2A Silent p.P2267P 0.28 TCGA-CK-4951-01 1 21616651 21616651 T A ECE1 Splice_Site p.X18_splice 0.12 TCGA-CK-4951-01 1 216371824 216371824 G T USH2A Missense_Mutation p.P1305H 0.32 probably_damaging(0.981) TCGA-CK-4951-01 1 216497033 216497033 T C USH2A Missense_Mutation p.T445A 0.23 benign(0.02) TCGA-CK-4951-01 1 217793659 217793659 T C GPATCH2 Missense_Mutation p.H80R 0.42 tolerated(0.16) possibly_damaging(0.623) TCGA-CK-4951-01 1 21977904 21977904 C T RAP1GAP Intron 0.39 TCGA-CK-4951-01 1 220101250 220101250 C T SLC30A10 Missense_Mutation p.R178H 0.39 tolerated(0.17) benign(0) TCGA-CK-4951-01 1 220964994 220964994 T C MARC1 Missense_Mutation p.V146A 0.21 deleterious(0) benign(0.219) TCGA-CK-4951-01 1 221053338 221053338 G A HLX Missense_Mutation p.A47T 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-4951-01 1 221053617 221053617 C T HLX Missense_Mutation p.P140S 0.47 deleterious_low_confidence(0.02) benign(0.162) TCGA-CK-4951-01 1 221053637 221053637 C T HLX Silent p.A146A 0.44 TCGA-CK-4951-01 1 221054571 221054571 G - HLX Frame_Shift_Del p.V211Cfs*17 0.27 TCGA-CK-4951-01 1 22140997 22140997 C T LDLRAD2 Silent p.C64C 0.31 TCGA-CK-4951-01 1 22142497 22142497 T C LDLRAD2 Silent p.C191C 0.30 TCGA-CK-4951-01 1 22150596 22150596 C T LDLRAD2 3'UTR 0.35 TCGA-CK-4951-01 1 22150920 22150920 C G LDLRAD2 3'UTR 0.62 TCGA-CK-4951-01 1 22200454 22200454 G A HSPG2 Missense_Mutation p.A1236V 0.25 possibly_damaging(0.653) TCGA-CK-4951-01 1 22200903 22200903 C T HSPG2 Missense_Mutation p.G1218S 0.33 benign(0.034) TCGA-CK-4951-01 1 22211862 22211862 G C HSPG2 Missense_Mutation p.H387Q 0.28 benign(0.177) TCGA-CK-4951-01 1 222696212 222696212 G A HHIPL2 Silent p.L636L 0.26 TCGA-CK-4951-01 1 2238094 2238094 G A SKI Missense_Mutation p.E693K 0.23 deleterious(0) probably_damaging(0.986) TCGA-CK-4951-01 1 223980164 223980164 C T TP53BP2 Missense_Mutation p.A975T 0.34 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 1 22416689 22416689 T A CDC42 Intron 0.31 TCGA-CK-4951-01 1 224301991 224301991 G A FBXO28 Missense_Mutation p.A54T 0.49 tolerated_low_confidence(0.17) unknown(0) TCGA-CK-4951-01 1 224302043 224302043 C T FBXO28 Missense_Mutation p.A71V 0.24 tolerated(1) benign(0.167) TCGA-CK-4951-01 1 224463089 224463089 T A NVL Silent p.I678I 0.13 TCGA-CK-4951-01 1 2252713 2252713 T A MORN1 3'UTR 0.26 TCGA-CK-4951-01 1 225339752 225339752 G A DNAH14 Silent p.A742A 0.12 TCGA-CK-4951-01 1 226125182 226125182 C T LEFTY2 Missense_Mutation p.A354T 0.29 tolerated(0.29) benign(0.094) TCGA-CK-4951-01 1 226253773 226253773 A - H3F3A Intron 0.40 TCGA-CK-4951-01 1 226420293 226420293 T G LIN9 Missense_Mutation p.N529T 0.38 tolerated(0.2) possibly_damaging(0.621) TCGA-CK-4951-01 1 226595649 226595649 A G PARP1 5'UTR 0.28 TCGA-CK-4951-01 1 227069701 227069701 C T PSEN2 Silent p.C31C 0.32 TCGA-CK-4951-01 1 227073279 227073279 C T PSEN2 Nonsense_Mutation p.Q133* 0.31 TCGA-CK-4951-01 1 227077783 227077783 G T PSEN2 Nonsense_Mutation p.E279* 0.38 TCGA-CK-4951-01 1 228447381 228447381 C T OBSCN Missense_Mutation p.R1681W 0.33 possibly_damaging(0.577) TCGA-CK-4951-01 1 228467776 228467776 G A OBSCN Missense_Mutation p.V2980I 0.32 probably_damaging(0.997) TCGA-CK-4951-01 1 228681590 228681590 C T RNF187 3'UTR 0.28 TCGA-CK-4951-01 1 2290119 2290119 C T MORN1 Missense_Mutation p.V261I 0.28 tolerated(0.23) benign(0.211) TCGA-CK-4951-01 1 229434782 229434782 A G RAB4A Silent p.V168V 0.28 TCGA-CK-4951-01 1 229683339 229683339 T A ABCB10 Silent p.S276S 0.21 TCGA-CK-4951-01 1 229683344 229683344 G A ABCB10 Missense_Mutation p.L275F 0.22 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 1 230372167 230372167 G A GALNT2 Splice_Site p.X181_splice 0.24 TCGA-CK-4951-01 1 230898396 230898396 C T CAPN9 Intron 0.28 TCGA-CK-4951-01 1 231954354 231954354 G A DISC1 Intron 0.26 TCGA-CK-4951-01 1 233431180 233431180 G T PCNXL2 Silent p.A15A 0.25 TCGA-CK-4951-01 1 233490586 233490586 C A MLK4 Nonsense_Mutation p.C380* 0.25 TCGA-CK-4951-01 1 233802469 233802469 C T KCNK1 Missense_Mutation p.R162C 0.34 tolerated(0.07) possibly_damaging(0.847) TCGA-CK-4951-01 1 236371462 236371462 C T GPR137B 3'UTR 0.28 TCGA-CK-4951-01 1 23637324 23637324 G A HNRNPR Nonsense_Mutation p.R512* 0.29 TCGA-CK-4951-01 1 236715332 236715332 C T HEATR1 Missense_Mutation p.E2105K 0.15 deleterious(0) probably_damaging(0.987) TCGA-CK-4951-01 1 23689274 23689274 T C ZNF436 Missense_Mutation p.K201E 0.38 deleterious(0) possibly_damaging(0.724) TCGA-CK-4951-01 1 236924347 236924347 G A ACTN2 Silent p.L800L 0.31 TCGA-CK-4951-01 1 23695826 23695826 C T C1orf213 Silent p.S12S 0.42 TCGA-CK-4951-01 1 23762341 23762341 C T ASAP3 Intron 0.20 TCGA-CK-4951-01 1 23836362 23836362 G A E2F2 3'UTR 0.33 TCGA-CK-4951-01 1 240070901 240070901 C T CHRM3 Silent p.S50S 0.31 TCGA-CK-4951-01 1 240256704 240256704 C T FMN2 Missense_Mutation p.S432F 0.33 unknown(0) TCGA-CK-4951-01 1 240374397 240374397 C A FMN2 Silent p.S1309S 0.30 TCGA-CK-4951-01 1 24122302 24122302 G A GALE 3'UTR 0.31 TCGA-CK-4951-01 1 24192001 24192001 C T FUCA1 Silent p.L168L 0.28 TCGA-CK-4951-01 1 24289808 24289808 C T PNRC2 3'UTR 0.31 TCGA-CK-4951-01 1 243349643 243349643 T C CEP170 Missense_Mutation p.E397G 0.41 deleterious(0) possibly_damaging(0.579) TCGA-CK-4951-01 1 2434403 2434403 C T PLCH2 Intron 0.20 TCGA-CK-4951-01 1 24384096 24384096 C T MYOM3 Missense_Mutation p.V1358I 0.17 tolerated(0.58) benign(0.002) TCGA-CK-4951-01 1 244217572 244217572 A T ZBTB18 Missense_Mutation p.S166C 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-CK-4951-01 1 244579300 244579300 A T ADSS Missense_Mutation p.I384N 0.15 tolerated(0.43) benign(0.003) TCGA-CK-4951-01 1 245847548 245847548 G A KIF26B Missense_Mutation p.A758T 0.33 tolerated(1) unknown(0) TCGA-CK-4951-01 1 247013934 247013934 C T AHCTF1 Missense_Mutation p.D1801N 0.31 tolerated(0.22) benign(0.009) TCGA-CK-4951-01 1 247264407 247264407 A T ZNF669 Missense_Mutation p.Y222N 0.37 deleterious(0.01) possibly_damaging(0.859) TCGA-CK-4951-01 1 247473097 247473097 C T ZNF496 Missense_Mutation p.A266T 0.35 tolerated(0.44) benign(0.004) TCGA-CK-4951-01 1 247599377 247599377 A T NLRP3 Silent p.G868G 0.28 TCGA-CK-4951-01 1 248028188 248028188 C T TRIM58 Missense_Mutation p.A233V 0.12 tolerated(0.45) benign(0.006) TCGA-CK-4951-01 1 248343294 248343294 T C OR2M2 Missense_Mutation p.W3R 0.27 deleterious(0.04) benign(0.009) TCGA-CK-4951-01 1 248344068 248344068 C T OR2M2 Missense_Mutation p.R261W 0.32 deleterious(0.05) benign(0.104) TCGA-CK-4951-01 1 248458615 248458615 G A OR2T12 Missense_Mutation p.A89V 0.28 deleterious(0.04) benign(0.009) TCGA-CK-4951-01 1 249110821 249110821 G A SH3BP5L Missense_Mutation p.A96V 0.55 tolerated(0.08) benign(0.346) TCGA-CK-4951-01 1 249142647 249142647 G A ZNF672 Missense_Mutation p.E392K 0.42 deleterious(0) possibly_damaging(0.641) TCGA-CK-4951-01 1 249144644 249144644 G A ZNF692 Missense_Mutation p.T447M 0.41 deleterious(0.02) probably_damaging(1) TCGA-CK-4951-01 1 249151463 249151463 A T ZNF692 Missense_Mutation p.S154T 0.18 tolerated(0.3) benign(0.005) TCGA-CK-4951-01 1 24978061 24978061 T C SRRM1 Missense_Mutation p.V228A 0.40 unknown(0) TCGA-CK-4951-01 1 25944692 25944692 G T MAN1C1 Missense_Mutation p.G135V 0.33 tolerated(0.17) benign(0.013) TCGA-CK-4951-01 1 25944696 25944696 C A MAN1C1 Missense_Mutation p.D136E 0.33 tolerated(1) benign(0) TCGA-CK-4951-01 1 26301136 26301136 G A PAFAH2 Missense_Mutation p.A255V 0.32 deleterious(0) probably_damaging(0.975) TCGA-CK-4951-01 1 26317321 26317321 G A PAFAH2 5'UTR 0.19 TCGA-CK-4951-01 1 26510250 26510250 G A CNKSR1 Missense_Mutation p.E262K 0.28 tolerated(1) benign(0.037) TCGA-CK-4951-01 1 26772841 26772841 G A DHDDS Missense_Mutation p.V120I 0.23 tolerated(0.42) benign(0.065) TCGA-CK-4951-01 1 27190009 27190009 G A SFN Silent p.L102L 0.32 TCGA-CK-4951-01 1 27212525 27212525 T A GPN2 Missense_Mutation p.E223V 0.37 tolerated(0.09) benign(0.082) TCGA-CK-4951-01 1 27216222 27216222 G A GPN2 Silent p.G122G 0.25 TCGA-CK-4951-01 1 27216237 27216237 G A GPN2 Silent p.L117L 0.24 TCGA-CK-4951-01 1 27216260 27216260 C T GPN2 Missense_Mutation p.D110N 0.26 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 27332247 27332247 C T FAM46B 3'UTR 0.17 TCGA-CK-4951-01 1 27332363 27332363 C T FAM46B 3'UTR 0.38 TCGA-CK-4951-01 1 27338986 27338986 C T FAM46B Missense_Mutation p.R59Q 0.37 deleterious(0.05) probably_damaging(0.994) TCGA-CK-4951-01 1 27427040 27427040 C A SLC9A1 Nonsense_Mutation p.E736* 0.17 TCGA-CK-4951-01 1 27480780 27480780 A T SLC9A1 Missense_Mutation p.F16I 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.879) TCGA-CK-4951-01 1 27657244 27657244 C T TMEM222 Silent p.I76I 0.33 TCGA-CK-4951-01 1 27671754 27671754 G A SYTL1 5'UTR 0.38 TCGA-CK-4951-01 1 27675995 27675995 C A SYTL1 Intron 0.31 TCGA-CK-4951-01 1 27684285 27684285 G A MAP3K6 Missense_Mutation p.R1000C 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-CK-4951-01 1 27684997 27684997 C T MAP3K6 Missense_Mutation p.A897T 0.18 deleterious(0.04) probably_damaging(0.969) TCGA-CK-4951-01 1 27689977 27689977 G A MAP3K6 Silent p.A309A 0.30 TCGA-CK-4951-01 1 27720516 27720516 C A GPR3 Missense_Mutation p.R72S 0.44 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 1 27734753 27734753 C T WASF2 Missense_Mutation p.R476H 0.29 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 1 27736492 27736492 C A WASF2 Missense_Mutation p.G345W 0.30 tolerated(0.06) unknown(0) TCGA-CK-4951-01 1 27873971 27873971 C T AHDC1 Silent p.P1552P 0.27 TCGA-CK-4951-01 1 27877236 27877236 C T AHDC1 Missense_Mutation p.R464H 0.20 deleterious(0) possibly_damaging(0.715) TCGA-CK-4951-01 1 27877269 27877269 G A AHDC1 Missense_Mutation p.P453L 0.31 tolerated(0.3) benign(0.004) TCGA-CK-4951-01 1 27878277 27878277 T A AHDC1 Missense_Mutation p.N117I 0.25 deleterious_low_confidence(0) benign(0.002) TCGA-CK-4951-01 1 27943474 27943474 G A FGR Silent p.G192G 0.28 TCGA-CK-4951-01 1 28271911 28271911 C A SMPDL3B Missense_Mutation p.A77D 0.29 tolerated(0.1) probably_damaging(0.982) TCGA-CK-4951-01 1 28275580 28275580 G A SMPDL3B Missense_Mutation p.D94N 0.36 deleterious(0.02) possibly_damaging(0.539) TCGA-CK-4951-01 1 28285084 28285084 C T SMPDL3B Missense_Mutation p.P368L 0.31 deleterious(0.02) possibly_damaging(0.705) TCGA-CK-4951-01 1 28362159 28362159 G A EYA3 Missense_Mutation p.S86L 0.14 deleterious(0.01) possibly_damaging(0.503) TCGA-CK-4951-01 1 28527705 28527705 G A DNAJC8 3'UTR 0.09 TCGA-CK-4951-01 1 28905089 28905089 C A TRNAU1AP 3'Flank 0.29 TCGA-CK-4951-01 1 29023562 29023562 G A GMEB1 Silent p.Q198Q 0.14 TCGA-CK-4951-01 1 29063580 29063580 C T YTHDF2 5'UTR 0.52 TCGA-CK-4951-01 1 29064013 29064013 C T YTHDF2 Intron 0.39 TCGA-CK-4951-01 1 29064101 29064101 A T YTHDF2 Intron 0.36 TCGA-CK-4951-01 1 29069385 29069385 C T YTHDF2 Silent p.S201S 0.29 TCGA-CK-4951-01 1 29095640 29095640 A - YTHDF2 3'UTR 0.45 TCGA-CK-4951-01 1 29342206 29342206 G A EPB41 Missense_Mutation p.V278I 0.24 tolerated(0.41) benign(0.001) TCGA-CK-4951-01 1 29447377 29447377 G A TMEM200B 3'UTR 0.24 TCGA-CK-4951-01 1 29609201 29609201 A T PTPRU Missense_Mutation p.I628F 0.18 deleterious(0) benign(0.241) TCGA-CK-4951-01 1 31898738 31898738 C T SERINC2 Silent p.C205C 0.21 TCGA-CK-4951-01 1 31898745 31898745 C T SERINC2 Missense_Mutation p.R208C 0.40 deleterious(0) probably_damaging(0.932) TCGA-CK-4951-01 1 32049095 32049095 C T TINAGL1 Silent p.G167G 0.33 TCGA-CK-4951-01 1 32050539 32050539 C T TINAGL1 Silent p.V253V 0.24 TCGA-CK-4951-01 1 32052346 32052346 T C TINAGL1 Missense_Mutation p.L418P 0.51 tolerated(0.26) possibly_damaging(0.633) TCGA-CK-4951-01 1 32084872 32084872 T A HCRTR1 Missense_Mutation p.Y27N 0.29 tolerated(0.08) benign(0.005) TCGA-CK-4951-01 1 32121014 32121014 C T COL16A1 Missense_Mutation p.M1397I 0.29 unknown(0) TCGA-CK-4951-01 1 32208515 32208515 C T BAI2 Silent p.V392V 0.26 TCGA-CK-4951-01 1 32209949 32209949 G A BAI2 Missense_Mutation p.A311V 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-CK-4951-01 1 32209957 32209957 G A BAI2 Silent p.G308G 0.33 TCGA-CK-4951-01 1 32279772 32279772 G A SPOCD1 Missense_Mutation p.A388V 0.21 tolerated(0.06) benign(0.004) TCGA-CK-4951-01 1 32636456 32636456 C T KPNA6 Silent p.F524F 0.34 TCGA-CK-4951-01 1 32672903 32672903 C T IQCC Silent p.R287R 0.11 TCGA-CK-4951-01 1 32674835 32674835 G A DCDC2B Silent p.V47V 0.31 TCGA-CK-4951-01 1 32690068 32690068 G A EIF3I Missense_Mutation p.C81Y 0.18 deleterious(0) benign(0.068) TCGA-CK-4951-01 1 32792660 32792660 C T HDAC1 Missense_Mutation p.A159V 0.32 deleterious(0) possibly_damaging(0.887) TCGA-CK-4951-01 1 32796495 32796495 C T HDAC1 Missense_Mutation p.T322M 0.42 tolerated(0.17) benign(0.012) TCGA-CK-4951-01 1 32797775 32797775 C T HDAC1 Missense_Mutation p.S435F 0.31 tolerated(0.17) benign(0.001) TCGA-CK-4951-01 1 32798623 32798625 AGG - HDAC1 In_Frame_Del p.E478del 0.35 TCGA-CK-4951-01 1 32800454 32800454 T - MARCKSL1 Frame_Shift_Del p.E111Gfs*87 0.12 TCGA-CK-4951-01 1 32841936 32841936 C T BSDC1 Silent p.A378A 0.40 TCGA-CK-4951-01 1 33233541 33233541 G C KIAA1522 Missense_Mutation p.R130P 0.31 deleterious(0) unknown(0) TCGA-CK-4951-01 1 33333357 33333357 C T FNDC5 Missense_Mutation p.A91T 0.48 tolerated(0.09) benign(0.395) TCGA-CK-4951-01 1 33333429 33333429 T G FNDC5 Missense_Mutation p.K67Q 0.35 tolerated(0.17) benign(0.421) TCGA-CK-4951-01 1 33747276 33747276 C T ZNF362 Missense_Mutation p.P258S 0.32 tolerated(0.07) probably_damaging(1) TCGA-CK-4951-01 1 33747279 33747279 C T ZNF362 Missense_Mutation p.H259Y 0.30 deleterious(0.02) probably_damaging(0.938) TCGA-CK-4951-01 1 3388299 3388299 C - ARHGEF16 Intron 0.17 TCGA-CK-4951-01 1 3389641 3389641 G A ARHGEF16 Splice_Site p.X341_splice 0.21 TCGA-CK-4951-01 1 3390011 3390011 G A ARHGEF16 Silent p.A410A 0.32 TCGA-CK-4951-01 1 33960489 33960489 G A ZSCAN20 Missense_Mutation p.A849T 0.41 tolerated_low_confidence(0.37) benign(0) TCGA-CK-4951-01 1 33961027 33961027 C T ZSCAN20 Missense_Mutation p.S1028F 0.29 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 1 33985102 33985102 C T CSMD2 3'UTR 0.19 TCGA-CK-4951-01 1 34090239 34090239 C T CSMD2 Silent p.P1795P 0.35 TCGA-CK-4951-01 1 34100826 34100826 G A CSMD2 Missense_Mutation p.P1652S 0.15 tolerated(0.12) possibly_damaging(0.531) TCGA-CK-4951-01 1 34112385 34112385 T C CSMD2 Missense_Mutation p.D1506G 0.27 deleterious(0.03) benign(0.417) TCGA-CK-4951-01 1 34180299 34180299 G A CSMD2 Silent p.G1058G 0.22 TCGA-CK-4951-01 1 3427426 3427426 C A MEGF6 Silent p.V385V 0.13 TCGA-CK-4951-01 1 3440784 3440784 C T MEGF6 Missense_Mutation p.G170S 0.22 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 35321400 35321400 T C SMIM12 Missense_Mutation p.E60G 0.32 deleterious(0) possibly_damaging(0.881) TCGA-CK-4951-01 1 35370480 35370480 G A DLGAP3 Missense_Mutation p.R169C 0.21 deleterious(0) probably_damaging(0.985) TCGA-CK-4951-01 1 35653677 35653677 C T SFPQ Missense_Mutation p.R571Q 0.28 tolerated(0.07) possibly_damaging(0.602) TCGA-CK-4951-01 1 35734656 35734656 G A ZMYM4 Silent p.E3E 0.36 TCGA-CK-4951-01 1 35921621 35921621 T C KIAA0319L Missense_Mutation p.E550G 0.34 deleterious(0.02) possibly_damaging(0.699) TCGA-CK-4951-01 1 36029374 36029374 C T NCDN Silent p.D539D 0.34 TCGA-CK-4951-01 1 36181903 36181903 C T C1orf216 Missense_Mutation p.G7E 0.28 tolerated(0.08) possibly_damaging(0.88) TCGA-CK-4951-01 1 3647534 3647534 C T TP73 Silent p.N463N 0.29 TCGA-CK-4951-01 1 36552835 36552835 G A TEKT2 Missense_Mutation p.A260T 0.25 deleterious(0.05) possibly_damaging(0.777) TCGA-CK-4951-01 1 36556884 36556884 C T ADPRHL2 Missense_Mutation p.A84V 0.28 tolerated(0.13) benign(0.173) TCGA-CK-4951-01 1 36603414 36603414 G A TRAPPC3 Missense_Mutation p.R136W 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 36636626 36636626 C - MAP7D1 Frame_Shift_Del p.P36Hfs*20 0.32 TCGA-CK-4951-01 1 36769656 36769656 G A THRAP3 3'UTR 0.30 TCGA-CK-4951-01 1 36785290 36785290 C T SH3D21 Silent p.S342S 0.30 TCGA-CK-4951-01 1 3679204 3679204 G A CCDC27 Silent p.S294S 0.38 TCGA-CK-4951-01 1 36809853 36809853 C T STK40 Missense_Mutation p.R251H 0.38 tolerated(0.52) possibly_damaging(0.681) TCGA-CK-4951-01 1 36823901 36823901 T C STK40 Missense_Mutation p.Y94C 0.24 deleterious(0) probably_damaging(0.959) TCGA-CK-4951-01 1 36897402 36897402 C G OSCP1 Splice_Site p.X172_splice 0.40 TCGA-CK-4951-01 1 36921446 36921446 C T MRPS15 Silent p.R239R 0.24 TCGA-CK-4951-01 1 3703430 3703430 G A LRRC47 Missense_Mutation p.R354C 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 1 3782230 3782230 A T DFFB Intron 0.36 TCGA-CK-4951-01 1 38061465 38061465 C T GNL2 5'UTR 0.30 TCGA-CK-4951-01 1 38061472 38061472 A G GNL2 5'UTR 0.30 TCGA-CK-4951-01 1 38061495 38061495 C G GNL2 5'UTR 0.32 TCGA-CK-4951-01 1 38078503 38078503 G A RSPO1 Missense_Mutation p.S239F 0.34 deleterious(0.01) benign(0.309) TCGA-CK-4951-01 1 38078536 38078536 G A RSPO1 Missense_Mutation p.A228V 0.29 tolerated(0.3) benign(0.013) TCGA-CK-4951-01 1 38078541 38078541 G A RSPO1 Silent p.N226N 0.27 TCGA-CK-4951-01 1 38187344 38187344 C T EPHA10 Missense_Mutation p.V712I 0.24 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 1 38260242 38260242 G A MANEAL Missense_Mutation p.V130M 0.28 deleterious(0.01) probably_damaging(0.98) TCGA-CK-4951-01 1 38323130 38323130 G A MTF1 Silent p.C67C 0.31 TCGA-CK-4951-01 1 38397411 38397411 C T INPP5B Intron 0.44 TCGA-CK-4951-01 1 39876600 39876600 T A KIAA0754 Missense_Mutation p.F85L 0.37 benign(0.294) TCGA-CK-4951-01 1 39888417 39888417 G A MACF1 Missense_Mutation p.A3270T 0.36 possibly_damaging(0.55) TCGA-CK-4951-01 1 39908584 39908584 G A MACF1 Splice_Site p.X4375_splice 0.43 TCGA-CK-4951-01 1 40038084 40038084 C T PABPC4 Missense_Mutation p.G123E 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 1 40235460 40235460 G T OXCT2 Missense_Mutation p.L490M 0.25 deleterious(0.02) possibly_damaging(0.767) TCGA-CK-4951-01 1 40307288 40307288 T C TRIT1 3'UTR 0.18 TCGA-CK-4951-01 1 40723931 40723931 G A ZMPSTE24 5'UTR 0.24 TCGA-CK-4951-01 1 40770037 40770037 G - COL9A2 Frame_Shift_Del p.G415Efs*116 0.26 TCGA-CK-4951-01 1 40776899 40776899 C T COL9A2 Intron 0.35 TCGA-CK-4951-01 1 41236264 41236264 G A NFYC Intron 0.09 TCGA-CK-4951-01 1 41514489 41514489 G A SCMH1 Silent p.D383D 0.20 TCGA-CK-4951-01 1 41990501 41990501 C T HIVEP3 Missense_Mutation p.C1763Y 0.38 probably_damaging(0.998) TCGA-CK-4951-01 1 42048809 42048809 G - HIVEP3 Frame_Shift_Del p.H554Tfs*20 0.22 TCGA-CK-4951-01 1 42657139 42657139 G A FOXJ3 Missense_Mutation p.R396C 0.31 tolerated(0.11) benign(0.446) TCGA-CK-4951-01 1 43200581 43200581 C G CLDN19 3'UTR 0.29 TCGA-CK-4951-01 1 43205513 43205513 G A CLDN19 Silent p.D74D 0.41 TCGA-CK-4951-01 1 43637637 43637637 G A EBNA1BP2 Nonsense_Mutation p.Q79* 0.38 TCGA-CK-4951-01 1 43770778 43770778 C T TIE1 Silent p.C105C 0.30 TCGA-CK-4951-01 1 43812204 43812204 C T MPL Nonsense_Mutation p.R357* 0.37 TCGA-CK-4951-01 1 43896348 43896348 G C SZT2 Silent p.G1497G 0.49 TCGA-CK-4951-01 1 43916769 43916769 G C SZT2 3'UTR 0.29 TCGA-CK-4951-01 1 44069104 44069104 C T PTPRF Silent p.G786G 0.32 TCGA-CK-4951-01 1 44071103 44071103 C T PTPRF Silent p.P1126P 0.14 TCGA-CK-4951-01 1 44072620 44072620 G A PTPRF Missense_Mutation p.A1280T 0.36 deleterious(0.01) possibly_damaging(0.625) TCGA-CK-4951-01 1 44079345 44079345 C T PTPRF Missense_Mutation p.L1344F 0.30 deleterious(0) probably_damaging(0.965) TCGA-CK-4951-01 1 44438200 44438200 G T DPH2 Nonsense_Mutation p.G487* 0.43 TCGA-CK-4951-01 1 45101656 45101656 G A RNF220 Intron 0.17 TCGA-CK-4951-01 1 45101804 45101804 G A RNF220 Missense_Mutation p.A366T 0.23 tolerated(0.07) benign(0.046) TCGA-CK-4951-01 1 45120705 45120705 G A TMEM53 Silent p.Y120Y 0.21 TCGA-CK-4951-01 1 45223757 45223757 A T KIF2C Missense_Mutation p.Y390F 0.32 deleterious(0.01) possibly_damaging(0.717) TCGA-CK-4951-01 1 45232775 45232775 T A KIF2C Missense_Mutation p.I701N 0.51 deleterious(0) possibly_damaging(0.555) TCGA-CK-4951-01 1 45271623 45271624 - G TCTEX1D4 3'UTR 0.23 TCGA-CK-4951-01 1 45279449 45279449 A T BTBD19 3'UTR 0.24 TCGA-CK-4951-01 1 45501825 45501825 C T ZSWIM5 Missense_Mutation p.A681T 0.23 tolerated(0.08) unknown(0) TCGA-CK-4951-01 1 45671816 45671816 G A ZSWIM5 Silent p.A69A 0.16 TCGA-CK-4951-01 1 46072251 46072251 G A NASP Missense_Mutation p.D133N 0.23 tolerated(0.06) possibly_damaging(0.848) TCGA-CK-4951-01 1 46657660 46657660 C T POMGNT1 Intron 0.31 TCGA-CK-4951-01 1 46660579 46660579 C A POMGNT1 Missense_Mutation p.G197C 0.12 probably_damaging(1) TCGA-CK-4951-01 1 46744529 46744529 G A LRRC41 3'UTR 0.33 TCGA-CK-4951-01 1 46976700 46976700 C T DMBX1 Missense_Mutation p.H143Y 0.28 deleterious(0.04) benign(0.076) TCGA-CK-4951-01 1 46977946 46977946 C G DMBX1 Missense_Mutation p.A305G 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.792) TCGA-CK-4951-01 1 47040585 47040585 T C MKNK1 Intron 0.26 TCGA-CK-4951-01 1 47501543 47501543 G A CYP4X1 Silent p.S186S 0.26 TCGA-CK-4951-01 1 47609547 47609547 G A CYP4A22 Missense_Mutation p.R250H 0.27 tolerated(0.26) benign(0.077) TCGA-CK-4951-01 1 47685573 47685573 C T TAL1 Missense_Mutation p.G272E 0.26 tolerated(0.13) benign(0.063) TCGA-CK-4951-01 1 47753233 47753233 A G STIL Missense_Mutation p.S375P 0.29 tolerated(0.47) benign(0.012) TCGA-CK-4951-01 1 47882266 47882266 G A FOXE3 Silent p.T93T 0.45 TCGA-CK-4951-01 1 47882324 47882324 C T FOXE3 Missense_Mutation p.R113C 0.21 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 1 50887049 50887049 G C DMRTA2 Missense_Mutation p.P54A 0.42 deleterious(0) unknown(0) TCGA-CK-4951-01 1 52256593 52256593 A G NRD1 Silent p.T1078T 0.35 TCGA-CK-4951-01 1 52385645 52385645 C T RAB3B Missense_Mutation p.R205H 0.37 tolerated(0.06) benign(0.015) TCGA-CK-4951-01 1 52823323 52823323 G A CC2D1B Missense_Mutation p.R549W 0.47 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 1 53068111 53068111 G A GPX7 Nonsense_Mutation p.W10* 0.20 TCGA-CK-4951-01 1 53236961 53236961 C T ZYG11B Missense_Mutation p.R156C 0.36 tolerated(0.18) probably_damaging(0.917) TCGA-CK-4951-01 1 53535492 53535492 C A PODN Missense_Mutation p.P37T 0.37 tolerated_low_confidence(0.3) benign(0.136) TCGA-CK-4951-01 1 53544301 53544301 C T PODN Silent p.R421R 0.21 TCGA-CK-4951-01 1 53676677 53676677 A T CPT2 Missense_Mutation p.D444V 0.33 deleterious(0.01) benign(0.278) TCGA-CK-4951-01 1 53736896 53736896 C T LRP8 Intron 0.31 TCGA-CK-4951-01 1 54405725 54405725 C T HSPB11 Missense_Mutation p.E11K 0.37 tolerated(0.34) benign(0.296) TCGA-CK-4951-01 1 55075466 55075466 G A FAM151A Silent p.I411I 0.21 TCGA-CK-4951-01 1 55247428 55247428 C T TTC22 Missense_Mutation p.A400T 0.27 tolerated(0.1) benign(0.265) TCGA-CK-4951-01 1 55518069 55518069 C T PCSK9 Silent p.T214T 0.37 TCGA-CK-4951-01 1 55562668 55562668 G A USP24 Nonsense_Mutation p.Q1965* 0.38 TCGA-CK-4951-01 1 59042066 59042066 G A TACSTD2 Missense_Mutation p.R255C 0.46 deleterious(0) possibly_damaging(0.517) TCGA-CK-4951-01 1 61872384 61872385 - C NFIA Frame_Shift_Ins p.T516Hfs*60 0.28 TCGA-CK-4951-01 1 61921198 61921198 T A NFIA 3'UTR 0.17 TCGA-CK-4951-01 1 6211190 6211190 G A CHD5 Missense_Mutation p.S299L 0.24 deleterious(0.01) possibly_damaging(0.734) TCGA-CK-4951-01 1 62232059 62232059 A C INADL Missense_Mutation p.N100H 0.21 deleterious(0.02) possibly_damaging(0.77) TCGA-CK-4951-01 1 6269567 6269567 G C RNF207 Missense_Mutation p.D241H 0.31 tolerated(0.22) benign(0.004) TCGA-CK-4951-01 1 62703765 62703765 A T KANK4 3'UTR 0.25 TCGA-CK-4951-01 1 6272065 6272065 G A RNF207 Silent p.E416E 0.26 TCGA-CK-4951-01 1 6272376 6272376 C T RNF207 Missense_Mutation p.A461V 0.28 deleterious(0.05) benign(0.217) TCGA-CK-4951-01 1 62734048 62734048 G A KANK4 Silent p.C714C 0.31 TCGA-CK-4951-01 1 63005237 63005237 A G DOCK7 Silent p.L1062L 0.31 TCGA-CK-4951-01 1 6341340 6341340 A T ACOT7 Missense_Mutation p.V289D 0.18 deleterious(0) probably_damaging(0.988) TCGA-CK-4951-01 1 63789224 63789224 C T FOXD3 Silent p.S165S 0.32 TCGA-CK-4951-01 1 63991311 63991311 G A EFCAB7 Missense_Mutation p.R23Q 0.33 tolerated(0.57) benign(0) TCGA-CK-4951-01 1 65130187 65130187 G A CACHD1 Missense_Mutation p.V650I 0.30 tolerated(0.29) benign(0.108) TCGA-CK-4951-01 1 6526132 6526132 C T TNFRSF25 Silent p.A12A 0.39 TCGA-CK-4951-01 1 65296558 65296558 T A RAVER2 Missense_Mutation p.Y643N 0.41 deleterious(0.02) possibly_damaging(0.597) TCGA-CK-4951-01 1 6530317 6530317 C T PLEKHG5 Missense_Mutation p.M672I 0.39 deleterious(0.01) possibly_damaging(0.609) TCGA-CK-4951-01 1 6530825 6530825 C T PLEKHG5 Silent p.E583E 0.23 TCGA-CK-4951-01 1 6531638 6531638 C T PLEKHG5 Silent p.L476L 0.39 TCGA-CK-4951-01 1 6535561 6535561 C T PLEKHG5 Silent p.L136L 0.19 TCGA-CK-4951-01 1 6556653 6556653 T A PLEKHG5 Intron 0.29 TCGA-CK-4951-01 1 6579703 6579703 C T NOL9 3'Flank 0.30 TCGA-CK-4951-01 1 66075670 66075670 T C LEPR Missense_Mutation p.L598P 0.31 deleterious(0) possibly_damaging(0.786) TCGA-CK-4951-01 1 66384480 66384480 G A PDE4B Silent p.T81T 0.33 TCGA-CK-4951-01 1 6639105 6639105 T C TAS1R1 Missense_Mutation p.S663P 0.23 deleterious(0.01) probably_damaging(0.962) TCGA-CK-4951-01 1 6640643 6640643 C T ZBTB48 5'UTR 0.29 TCGA-CK-4951-01 1 66797947 66797947 A T PDE4B Intron 0.50 TCGA-CK-4951-01 1 6694605 6694605 C G DNAJC11 3'UTR 0.35 TCGA-CK-4951-01 1 70144131 70144131 G C LRRC7 Missense_Mutation p.A24P 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.665) TCGA-CK-4951-01 1 70446099 70446099 T C LRRC7 Missense_Mutation p.L212S 0.32 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 1 74819697 74819697 G A FPGT-TNNI3K Missense_Mutation p.R468H 0.30 tolerated(0.18) probably_damaging(0.997) TCGA-CK-4951-01 1 76878103 76878103 G A ST6GALNAC3 Splice_Site p.X208_splice 0.28 TCGA-CK-4951-01 1 78207393 78207393 A T USP33 Missense_Mutation p.I28N 0.41 tolerated_low_confidence(0.1) benign(0) TCGA-CK-4951-01 1 78207400 78207400 C T USP33 Missense_Mutation p.E26K 0.39 tolerated_low_confidence(0.16) benign(0.005) TCGA-CK-4951-01 1 78309042 78309042 C T FAM73A Nonsense_Mutation p.R316* 0.33 TCGA-CK-4951-01 1 78392293 78392293 T C NEXN Silent p.V228V 0.27 TCGA-CK-4951-01 1 78433328 78433328 C T FUBP1 Silent p.P91P 0.62 TCGA-CK-4951-01 1 78470642 78470642 C T DNAJB4 5'UTR 0.50 TCGA-CK-4951-01 1 7848254 7848254 C T PER3 Silent p.Y180Y 0.38 TCGA-CK-4951-01 1 8074358 8074358 C T ERRFI1 Missense_Mutation p.E101K 0.23 tolerated(0.35) benign(0.036) TCGA-CK-4951-01 1 82451036 82451036 C A LPHN2 Missense_Mutation p.Q1152K 0.31 deleterious(0.02) benign(0.044) TCGA-CK-4951-01 1 82456580 82456580 T A LPHN2 Missense_Mutation p.N1321K 0.27 tolerated_low_confidence(0.31) probably_damaging(0.999) TCGA-CK-4951-01 1 8420023 8420023 C G RERE Missense_Mutation p.G1140A 0.50 unknown(0) TCGA-CK-4951-01 1 85116003 85116003 A - SSX2IP Intron 0.23 TCGA-CK-4951-01 1 86361575 86361575 C A COL24A1 Missense_Mutation p.G963V 0.24 deleterious(0) probably_damaging(0.977) TCGA-CK-4951-01 1 87633876 87633876 C T RP5-1052I5.2 3'UTR 0.11 TCGA-CK-4951-01 1 876651 876651 C T SAMD11 Silent p.G278G 0.33 TCGA-CK-4951-01 1 891534 891534 G A NOC2L Missense_Mutation p.T183I 0.23 deleterious(0) possibly_damaging(0.707) TCGA-CK-4951-01 1 89206848 89206848 A - PKN2 Frame_Shift_Del p.S78Vfs*5 0.23 TCGA-CK-4951-01 1 8921438 8921438 C T ENO1 Missense_Mutation p.R429K 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.51) TCGA-CK-4951-01 1 892566 892568 CTC - NOC2L In_Frame_Del p.E89del 0.37 TCGA-CK-4951-01 1 894640 894640 C T NOC2L 5'UTR 0.31 TCGA-CK-4951-01 1 896892 896892 G A KLHL17 Silent p.V109V 0.33 TCGA-CK-4951-01 1 901912 901912 A G PLEKHN1 Translation_Start_Site p.M1? 0.21 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 1 90400031 90400031 C A LRRC8D Silent p.A468A 0.42 TCGA-CK-4951-01 1 90401493 90401493 C T LRRC8D 3'UTR 0.30 TCGA-CK-4951-01 1 9164565 9164565 C A GPR157 Silent p.P307P 0.30 TCGA-CK-4951-01 1 9165644 9165644 C T GPR157 Silent p.P231P 0.27 TCGA-CK-4951-01 1 9165684 9165684 C T GPR157 Missense_Mutation p.R218H 0.21 tolerated(0.23) benign(0.004) TCGA-CK-4951-01 1 92456784 92456784 T C BRDT Silent p.P682P 0.34 TCGA-CK-4951-01 1 92945902 92945902 T A GFI1 Intron 0.40 TCGA-CK-4951-01 1 92945906 92945906 T A GFI1 Missense_Mutation p.Q308L 0.38 deleterious(0) probably_damaging(0.913) TCGA-CK-4951-01 1 93073170 93073170 C T EVI5 Missense_Mutation p.A632T 0.11 tolerated(0.56) benign(0.118) TCGA-CK-4951-01 1 93646312 93646312 G A CCDC18 Nonsense_Mutation p.W11* 0.45 TCGA-CK-4951-01 1 93812144 93812144 G C DR1 5'UTR 0.33 TCGA-CK-4951-01 1 93913852 93913852 C T FNBP1L Missense_Mutation p.T5M 0.38 deleterious(0) benign(0.089) TCGA-CK-4951-01 1 94476408 94476408 C T ABCA4 Missense_Mutation p.V1888M 0.33 deleterious(0) possibly_damaging(0.886) TCGA-CK-4951-01 1 94643685 94643685 T A ARHGAP29 Missense_Mutation p.K840I 0.34 deleterious(0.01) probably_damaging(0.922) TCGA-CK-4951-01 1 94650501 94650501 T - ARHGAP29 Frame_Shift_Del p.K679Rfs*35 0.21 TCGA-CK-4951-01 1 9658616 9658616 G A TMEM201 Missense_Mutation p.R180H 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 1 9670734 9670734 C - TMEM201 Frame_Shift_Del p.P547Lfs*38 0.27 TCGA-CK-4951-01 1 97278434 97278434 T A PTBP2 Missense_Mutation p.N446K 0.35 tolerated(0.05) possibly_damaging(0.563) TCGA-CK-4951-01 1 97548014 97548014 T C DPYD Missense_Mutation p.K927E 0.25 tolerated(0.41) benign(0.006) TCGA-CK-4951-01 1 978673 978673 C T AGRN Missense_Mutation p.A480V 0.26 tolerated(1) possibly_damaging(0.483) TCGA-CK-4951-01 1 9790667 9790667 C T CLSTN1 Missense_Mutation p.E949K 0.52 deleterious(0.03) probably_damaging(0.995) TCGA-CK-4951-01 1 9791362 9791362 C T CLSTN1 Missense_Mutation p.A884T 0.24 tolerated(0.31) benign(0.297) TCGA-CK-4951-01 1 979503 979503 G A AGRN Missense_Mutation p.G672R 0.20 deleterious(0.02) probably_damaging(0.991) TCGA-CK-4951-01 1 979619 979619 G A AGRN Silent p.Q710Q 0.32 TCGA-CK-4951-01 1 9804022 9804022 G A CLSTN1 Missense_Mutation p.R426W 0.36 deleterious(0) probably_damaging(0.967) TCGA-CK-4951-01 1 982026 982026 C T AGRN Missense_Mutation p.A1054V 0.42 tolerated(0.29) benign(0.305) TCGA-CK-4951-01 1 99422186 99422186 G A LPPR5 Missense_Mutation p.R117C 0.42 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 20 1223338 1223338 T C RAD21L1 Missense_Mutation p.I311T 0.15 deleterious(0) benign(0.275) TCGA-CK-4951-01 20 1223342 1223342 T A RAD21L1 Missense_Mutation p.H312Q 0.16 tolerated(0.1) possibly_damaging(0.709) TCGA-CK-4951-01 20 16359817 16359817 G C KIF16B Missense_Mutation p.Q944E 0.25 tolerated_low_confidence(0.11) benign(0.024) TCGA-CK-4951-01 20 16486780 16486780 T A KIF16B Missense_Mutation p.D252V 0.35 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 20 17585237 17585237 T C DSTN Missense_Mutation p.Y117H 0.25 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 20 17596131 17596131 A C RRBP1 Missense_Mutation p.L899R 0.35 deleterious(0) possibly_damaging(0.883) TCGA-CK-4951-01 20 17602106 17602106 C T RRBP1 Silent p.E704E 0.42 TCGA-CK-4951-01 20 18163843 18163843 C T CSRP2BP Missense_Mutation p.H629Y 0.28 tolerated(1) benign(0.018) TCGA-CK-4951-01 20 18163864 18163864 G A CSRP2BP Missense_Mutation p.A636T 0.37 deleterious(0.05) benign(0.217) TCGA-CK-4951-01 20 1896050 1896050 C T SIRPA Missense_Mutation p.P129S 0.31 tolerated(0.27) possibly_damaging(0.804) TCGA-CK-4951-01 20 19998048 19998048 C A NAA20 Missense_Mutation p.T3K 0.29 deleterious(0.03) possibly_damaging(0.593) TCGA-CK-4951-01 20 20232339 20232339 G A C20orf26 Missense_Mutation p.V754I 0.48 deleterious(0.03) benign(0.274) TCGA-CK-4951-01 20 20232399 20232399 C T C20orf26 Nonsense_Mutation p.Q774* 0.33 TCGA-CK-4951-01 20 20571955 20571955 A G RALGAPA2 Missense_Mutation p.V736A 0.36 tolerated(0.13) benign(0.066) TCGA-CK-4951-01 20 2097854 2097854 G A STK35 Missense_Mutation p.A479T 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-CK-4951-01 20 21369910 21369910 G A XRN2 Splice_Site p.X930_splice 0.34 TCGA-CK-4951-01 20 21369914 21369914 T A XRN2 Missense_Mutation p.Y931N 0.32 deleterious_low_confidence(0.02) benign(0.01) TCGA-CK-4951-01 20 23618331 23618331 C A CST3 Missense_Mutation p.V57F 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-CK-4951-01 20 24523769 24523769 G A SYNDIG1 Silent p.V12V 0.36 TCGA-CK-4951-01 20 24944614 24944614 G A APMAP Silent p.S362S 0.22 TCGA-CK-4951-01 20 25281492 25281492 G A ABHD12 Intron 0.32 TCGA-CK-4951-01 20 2597798 2597798 C T TMC2 Missense_Mutation p.A674V 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 20 2777172 2777172 C T CPXM1 Splice_Site p.X349_splice 0.39 TCGA-CK-4951-01 20 2778669 2778669 C T CPXM1 Missense_Mutation p.S209N 0.37 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 20 2796238 2796238 G - C20orf141 Frame_Shift_Del p.A107Pfs*39 0.22 TCGA-CK-4951-01 20 280666 280666 G A ZCCHC3 3'UTR 0.25 TCGA-CK-4951-01 20 30037917 30037917 T A DEFB123 Missense_Mutation p.N48K 0.36 deleterious(0.01) unknown(0) TCGA-CK-4951-01 20 30053393 30053393 G T DEFB124 Nonsense_Mutation p.Y44* 0.26 TCGA-CK-4951-01 20 30053394 30053394 T G DEFB124 Missense_Mutation p.Y44S 0.25 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-CK-4951-01 20 30072079 30072079 G C REM1 Missense_Mutation p.R248P 0.27 tolerated(0.08) benign(0.073) TCGA-CK-4951-01 20 30154066 30154066 G A HM13 Silent p.A334A 0.21 TCGA-CK-4951-01 20 3026890 3026890 G A MRPS26 Missense_Mutation p.R59H 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-CK-4951-01 20 30354368 30354368 C T TPX2 Missense_Mutation p.T80I 0.34 tolerated(0.2) possibly_damaging(0.827) TCGA-CK-4951-01 20 30365373 30365373 C T TPX2 Missense_Mutation p.P272S 0.28 tolerated(0.5) benign(0.04) TCGA-CK-4951-01 20 30602811 30602812 - C CCM2L Frame_Shift_Ins p.D48Rfs*12 0.31 TCGA-CK-4951-01 20 30610577 30610577 C T CCM2L Missense_Mutation p.R350W 0.24 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 20 30672195 30672195 G A HCK Silent p.K228K 0.24 TCGA-CK-4951-01 20 30897705 30897705 C T KIF3B Missense_Mutation p.S42F 0.37 deleterious(0.03) benign(0.16) TCGA-CK-4951-01 20 30898826 30898826 G T KIF3B Nonsense_Mutation p.E416* 0.36 TCGA-CK-4951-01 20 31021236 31021236 C T ASXL1 Missense_Mutation p.S412F 0.35 deleterious(0) probably_damaging(0.981) TCGA-CK-4951-01 20 31021709 31021709 C A ASXL1 Missense_Mutation p.P570T 0.30 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 20 31044083 31044083 C T C20orf112 Silent p.V75V 0.39 TCGA-CK-4951-01 20 31291216 31291216 G A COMMD7 Nonsense_Mutation p.R191* 0.32 TCGA-CK-4951-01 20 31434480 31434480 C T MAPRE1 Silent p.F218F 0.37 TCGA-CK-4951-01 20 3146924 3146924 G - LZTS3 Frame_Shift_Del p.P181Rfs*26 0.29 TCGA-CK-4951-01 20 31624301 31624301 G A BPIFB6 Missense_Mutation p.A210T 0.39 tolerated(0.37) benign(0) TCGA-CK-4951-01 20 3171387 3171387 C T DDRGK1 Missense_Mutation p.R286Q 0.25 deleterious(0.02) probably_damaging(0.987) TCGA-CK-4951-01 20 3210336 3210336 C T SLC4A11 Missense_Mutation p.A569T 0.50 tolerated(0.72) benign(0.002) TCGA-CK-4951-01 20 32258511 32258511 C T NECAB3 Missense_Mutation p.G81D 0.43 tolerated(0.13) benign(0.21) TCGA-CK-4951-01 20 32354725 32354725 G C ZNF341 Missense_Mutation p.D424H 0.36 tolerated(0.08) possibly_damaging(0.5) TCGA-CK-4951-01 20 32436322 32436322 G A CHMP4B Silent p.A80A 0.33 TCGA-CK-4951-01 20 33169433 33169433 C T PIGU Missense_Mutation p.A324T 0.20 deleterious(0.02) benign(0.183) TCGA-CK-4951-01 20 33345805 33345805 T C NCOA6 Missense_Mutation p.N249S 0.41 possibly_damaging(0.763) TCGA-CK-4951-01 20 334011 334011 G A NRSN2 Missense_Mutation p.R116H 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-CK-4951-01 20 334056 334056 C T NRSN2 Missense_Mutation p.A131V 0.31 tolerated(0.05) possibly_damaging(0.527) TCGA-CK-4951-01 20 33509624 33509624 G A ACSS2 Silent p.L514L 0.28 TCGA-CK-4951-01 20 33575643 33575643 C T MYH7B Nonsense_Mutation p.Q490* 0.36 TCGA-CK-4951-01 20 33576044 33576044 T C MYH7B Silent p.P564P 0.40 TCGA-CK-4951-01 20 33592341 33592341 C T TRPC4AP Missense_Mutation p.A657T 0.34 tolerated(0.3) benign(0.002) TCGA-CK-4951-01 20 33875342 33875342 G C FAM83C Missense_Mutation p.L414V 0.33 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CK-4951-01 20 34021920 34021920 C T GDF5 Silent p.G431G 0.33 TCGA-CK-4951-01 20 34085758 34085758 G A CEP250 Missense_Mutation p.G1173R 0.33 benign(0.107) TCGA-CK-4951-01 20 34116817 34116818 - T C20orf173 Intron 0.19 TCGA-CK-4951-01 20 34260753 34260753 G A NFS1 Missense_Mutation p.R412C 0.19 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 20 35060984 35060984 C T DLGAP4 Silent p.Y288Y 0.26 TCGA-CK-4951-01 20 35399825 35399825 T A DSN1 Intron 0.31 TCGA-CK-4951-01 20 35421908 35421908 C T SOGA1 Missense_Mutation p.G1526D 0.35 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 20 35526237 35526237 G A SAMHD1 Silent p.F578F 0.25 TCGA-CK-4951-01 20 35563532 35563532 C T SAMHD1 Missense_Mutation p.D137N 0.10 deleterious(0.02) probably_damaging(0.962) TCGA-CK-4951-01 20 35575148 35575148 C T SAMHD1 Missense_Mutation p.G90R 0.22 tolerated(0.1) possibly_damaging(0.907) TCGA-CK-4951-01 20 35575186 35575186 A T SAMHD1 Nonsense_Mutation p.L77* 0.26 TCGA-CK-4951-01 20 35929733 35929733 C T MANBAL Missense_Mutation p.R23W 0.32 tolerated(0.07) benign(0.019) TCGA-CK-4951-01 20 36149667 36149667 G A NNAT 5'UTR 0.26 TCGA-CK-4951-01 20 36149676 36149676 G C NNAT 5'UTR 0.27 TCGA-CK-4951-01 20 36149683 36149683 G C NNAT 5'UTR 0.31 TCGA-CK-4951-01 20 36869866 36869866 G C KIAA1755 Missense_Mutation p.P223A 0.27 tolerated(0.11) benign(0.14) TCGA-CK-4951-01 20 37168565 37168565 C T RALGAPB Silent p.V842V 0.28 TCGA-CK-4951-01 20 3759155 3759155 A G SPEF1 Silent p.Y172Y 0.36 TCGA-CK-4951-01 20 377091 377091 C T TRIB3 Silent p.Y278Y 0.33 TCGA-CK-4951-01 20 3846593 3846593 C T MAVS Silent p.P474P 0.29 TCGA-CK-4951-01 20 3869997 3869997 C G PANK2 Missense_Mutation p.R84G 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-CK-4951-01 20 39791626 39791626 C T PLCG1 Missense_Mutation p.T237I 0.29 tolerated(0.25) benign(0.001) TCGA-CK-4951-01 20 39832774 39832774 C T ZHX3 Silent p.V261V 0.27 TCGA-CK-4951-01 20 398500 398500 A G RBCK1 Missense_Mutation p.Y129C 0.55 deleterious(0) probably_damaging(0.977) TCGA-CK-4951-01 20 40033696 40033696 G A CHD6 Missense_Mutation p.T2562M 0.24 deleterious(0.02) benign(0.016) TCGA-CK-4951-01 20 40052264 40052264 T C CHD6 Missense_Mutation p.T1475A 0.36 tolerated(0.82) benign(0.002) TCGA-CK-4951-01 20 4155790 4155790 A T SMOX Missense_Mutation p.I30F 0.34 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 20 42333903 42333903 C T MYBL2 Silent p.S470S 0.48 TCGA-CK-4951-01 20 42333914 42333914 C A MYBL2 Missense_Mutation p.T474K 0.46 deleterious(0) probably_damaging(0.976) TCGA-CK-4951-01 20 43108902 43108902 G A TTPAL Missense_Mutation p.R88H 0.29 deleterious(0) possibly_damaging(0.784) TCGA-CK-4951-01 20 43384973 43384973 G A RIMS4 Silent p.Y205Y 0.43 TCGA-CK-4951-01 20 43438880 43438880 G A RIMS4 Silent p.S11S 0.33 TCGA-CK-4951-01 20 43625924 43625924 G A STK4 Missense_Mutation p.A270T 0.42 tolerated(0.06) benign(0.161) TCGA-CK-4951-01 20 43726802 43726802 C T KCNS1 Missense_Mutation p.R204H 0.32 deleterious(0.02) possibly_damaging(0.742) TCGA-CK-4951-01 20 43933334 43933334 G A MATN4 Silent p.G59G 0.44 TCGA-CK-4951-01 20 43938271 43938271 G A RBPJL Missense_Mutation p.E66K 0.41 deleterious(0.01) benign(0.031) TCGA-CK-4951-01 20 43994283 43994283 G A SYS1 Missense_Mutation p.G63S 0.33 deleterious(0) probably_damaging(0.971) TCGA-CK-4951-01 20 43995624 43995624 C A SYS1 Missense_Mutation p.P114T 0.36 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 20 44506102 44506102 G A ZSWIM3 Missense_Mutation p.R302H 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 20 44513413 44513413 G C ZSWIM1 3'UTR 0.30 TCGA-CK-4951-01 20 44519284 44519284 G T NEURL2 Missense_Mutation p.T116K 0.36 tolerated(0.05) possibly_damaging(0.559) TCGA-CK-4951-01 20 44575967 44575967 C T PCIF1 Silent p.P591P 0.35 TCGA-CK-4951-01 20 44590713 44590713 C T ZNF335 Missense_Mutation p.D548N 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-CK-4951-01 20 44592416 44592416 C T ZNF335 Missense_Mutation p.G439D 0.35 deleterious(0) possibly_damaging(0.847) TCGA-CK-4951-01 20 44596428 44596428 C T ZNF335 Silent p.R253R 0.31 TCGA-CK-4951-01 20 44639595 44639595 C T MMP9 Silent p.D185D 0.25 TCGA-CK-4951-01 20 44640903 44640903 C T MMP9 Silent p.T375T 0.24 TCGA-CK-4951-01 20 44685899 44685899 C T SLC12A5 Silent p.L1095L 0.44 TCGA-CK-4951-01 20 44691501 44691501 G A NCOA5 Missense_Mutation p.A393V 0.31 tolerated(0.21) benign(0.026) TCGA-CK-4951-01 20 44803257 44803257 G A CDH22 Missense_Mutation p.S792L 0.21 tolerated(0.09) probably_damaging(0.992) TCGA-CK-4951-01 20 44856238 44856238 C T CDH22 Silent p.S193S 0.42 TCGA-CK-4951-01 20 45878141 45878141 G A ZMYND8 Missense_Mutation p.S555L 0.24 deleterious_low_confidence(0.02) benign(0.005) TCGA-CK-4951-01 20 46300991 46300991 C T SULF2 Silent p.G509G 0.32 TCGA-CK-4951-01 20 4708450 4708450 G A PRND 3'UTR 0.33 TCGA-CK-4951-01 20 47253122 47253122 C T PREX1 Missense_Mutation p.R1349H 0.35 tolerated(0.12) probably_damaging(0.953) TCGA-CK-4951-01 20 47351164 47351164 C A PREX1 Missense_Mutation p.E146D 0.39 tolerated(0.62) possibly_damaging(0.838) TCGA-CK-4951-01 20 47589757 47589757 T A ARFGEF2 Missense_Mutation p.V534E 0.18 deleterious(0) possibly_damaging(0.83) TCGA-CK-4951-01 20 47602132 47602132 A G ARFGEF2 Missense_Mutation p.Y753C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 20 47770513 47770513 A C STAU1 Missense_Mutation p.S101A 0.26 tolerated(0.6) benign(0.215) TCGA-CK-4951-01 20 47838039 47838039 T C DDX27 Silent p.S79S 0.39 TCGA-CK-4951-01 20 47896878 47896879 - T ZNFX1 5'Flank 0.27 TCGA-CK-4951-01 20 48252911 48252911 C T B4GALT5 Missense_Mutation p.A369T 0.28 tolerated(0.21) benign(0.006) TCGA-CK-4951-01 20 48522275 48522275 C T SPATA2 Missense_Mutation p.A482T 0.28 tolerated(0.7) benign(0.003) TCGA-CK-4951-01 20 48522881 48522881 C T SPATA2 Missense_Mutation p.A280T 0.40 tolerated(0.06) benign(0.281) TCGA-CK-4951-01 20 49577769 49577769 C A MOCS3 3'UTR 0.29 TCGA-CK-4951-01 20 50007827 50007827 G T NFATC2 3'UTR 0.30 TCGA-CK-4951-01 20 50139664 50139664 C T NFATC2 Silent p.P372P 0.32 TCGA-CK-4951-01 20 5093581 5093581 C T TMEM230 Intron 0.42 TCGA-CK-4951-01 20 51871682 51871682 C T TSHZ2 Missense_Mutation p.S562F 0.32 tolerated(0.06) possibly_damaging(0.828) TCGA-CK-4951-01 20 52645024 52645024 G A BCAS1 Silent p.D210D 0.28 TCGA-CK-4951-01 20 53092417 53092417 C T DOK5 5'UTR 0.22 TCGA-CK-4951-01 20 53205277 53205277 C T DOK5 Missense_Mutation p.T114I 0.32 tolerated(0.08) benign(0.194) TCGA-CK-4951-01 20 54941178 54941178 G A FAM210B Silent p.L138L 0.33 TCGA-CK-4951-01 20 54945212 54945212 T A AURKA 3'UTR 0.26 TCGA-CK-4951-01 20 54948595 54948595 T A AURKA Silent p.A241A 0.39 TCGA-CK-4951-01 20 5556065 5556067 GTT - GPCPD1 In_Frame_Del p.T332del 0.19 TCGA-CK-4951-01 20 55929124 55929124 T C RAE1 Silent p.F10F 0.27 TCGA-CK-4951-01 20 56140545 56140545 G A PCK1 Silent p.R518R 0.40 TCGA-CK-4951-01 20 56188387 56188387 C T ZBP1 Splice_Site p.X168_splice 0.28 TCGA-CK-4951-01 20 56190072 56190072 C T ZBP1 Missense_Mutation p.A125T 0.26 deleterious(0) probably_damaging(0.989) TCGA-CK-4951-01 20 56227427 56227427 C T PMEPA1 Silent p.S182S 0.36 TCGA-CK-4951-01 20 56234696 56234696 A G PMEPA1 Missense_Mutation p.V56A 0.39 deleterious(0.05) possibly_damaging(0.738) TCGA-CK-4951-01 20 57768312 57768312 C T ZNF831 Silent p.S746S 0.39 TCGA-CK-4951-01 20 6022819 6022819 G A LRRN4 Silent p.L358L 0.16 TCGA-CK-4951-01 20 60348123 60348123 C T CDH4 Missense_Mutation p.P154L 0.20 tolerated(0.24) probably_damaging(0.966) TCGA-CK-4951-01 20 60775816 60775816 C T MTG2 Missense_Mutation p.R302C 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 20 60888463 60888463 C T LAMA5 Silent p.T2904T 0.25 TCGA-CK-4951-01 20 60889697 60889697 C T LAMA5 Missense_Mutation p.A2761T 0.21 benign(0.006) TCGA-CK-4951-01 20 60889768 60889768 A G LAMA5 Missense_Mutation p.M2737T 0.25 benign(0.003) TCGA-CK-4951-01 20 60889899 60889899 G C LAMA5 Missense_Mutation p.R2718G 0.24 benign(0.054) TCGA-CK-4951-01 20 60892757 60892757 G A LAMA5 Silent p.S2439S 0.34 TCGA-CK-4951-01 20 6091015 6091015 G - FERMT1 Frame_Shift_Del p.Q226Sfs*26 0.19 TCGA-CK-4951-01 20 60912948 60912948 C T LAMA5 Silent p.A646A 0.12 TCGA-CK-4951-01 20 60963107 60963107 C T RPS21 Intron 0.38 TCGA-CK-4951-01 20 60985864 60985864 G A RBBP8NL 3'UTR 0.29 TCGA-CK-4951-01 20 60989392 60989392 G A RBBP8NL Silent p.L339L 0.40 TCGA-CK-4951-01 20 60989478 60989478 G A RBBP8NL Missense_Mutation p.P310L 0.39 tolerated(0.06) benign(0.098) TCGA-CK-4951-01 20 61162216 61162216 C T C20orf166 Missense_Mutation p.A10V 0.43 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-CK-4951-01 20 61299890 61299890 C G SLCO4A1 Missense_Mutation p.L625V 0.26 deleterious(0.03) probably_damaging(1) TCGA-CK-4951-01 20 61455798 61455798 G A COL9A3 Missense_Mutation p.C174Y 0.29 deleterious(0) unknown(0) TCGA-CK-4951-01 20 61461725 61461725 C T COL9A3 Missense_Mutation p.P392L 0.29 tolerated(0.42) benign(0.34) TCGA-CK-4951-01 20 61461732 61461732 C T COL9A3 Silent p.G394G 0.28 TCGA-CK-4951-01 20 61477004 61477004 C T TCFL5 Intron 0.34 TCGA-CK-4951-01 20 61513181 61513181 A G DIDO1 Missense_Mutation p.L1376P 0.41 benign(0.008) TCGA-CK-4951-01 20 61525895 61525895 C A DIDO1 Missense_Mutation p.Q814H 0.14 possibly_damaging(0.794) TCGA-CK-4951-01 20 61526213 61526213 C T DIDO1 Silent p.R795R 0.38 TCGA-CK-4951-01 20 61910264 61910264 C T ARFGAP1 Missense_Mutation p.R182C 0.27 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 20 61945131 61945131 T C COL20A1 Missense_Mutation p.L749P 0.29 deleterious(0) probably_damaging(0.981) TCGA-CK-4951-01 20 62038647 62038647 C T KCNQ2 Missense_Mutation p.A657T 0.25 tolerated(0.06) probably_damaging(1) TCGA-CK-4951-01 20 62120488 62120488 G A EEF1A2 Silent p.H349H 0.50 TCGA-CK-4951-01 20 62126423 62126423 C T EEF1A2 Missense_Mutation p.G119D 0.33 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-CK-4951-01 20 62191605 62191605 C T HELZ2 Missense_Mutation p.A2526T 0.23 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 20 62192190 62192190 C T HELZ2 Silent p.R2413R 0.30 TCGA-CK-4951-01 20 62193213 62193213 G A HELZ2 Silent p.Y2218Y 0.36 TCGA-CK-4951-01 20 62294239 62294239 G A RTEL1 Missense_Mutation p.E203K 0.23 deleterious(0) possibly_damaging(0.897) TCGA-CK-4951-01 20 62327246 62327246 C T RTEL1 3'UTR 0.30 TCGA-CK-4951-01 20 62367477 62367477 G A ZGPAT 3'UTR 0.14 TCGA-CK-4951-01 20 62572017 62572017 C T UCKL1 Missense_Mutation p.R411H 0.38 tolerated(0.25) benign(0.005) TCGA-CK-4951-01 20 62572024 62572024 C T UCKL1 Missense_Mutation p.A409T 0.38 deleterious(0.02) possibly_damaging(0.734) TCGA-CK-4951-01 20 62573982 62573982 C T UCKL1 Intron 0.20 TCGA-CK-4951-01 20 62606752 62606752 C T SAMD10 3'UTR 0.25 TCGA-CK-4951-01 20 62614401 62614401 G A PRPF6 Missense_Mutation p.A25T 0.19 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 20 62641652 62641652 G A PRPF6 Missense_Mutation p.C429Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 20 62642807 62642807 C T PRPF6 Missense_Mutation p.T492I 0.30 tolerated(0.07) benign(0.08) TCGA-CK-4951-01 20 62839452 62839452 A G MYT1 Silent p.E301E 0.31 TCGA-CK-4951-01 20 644468 644468 C T SCRT2 Silent p.A257A 0.42 TCGA-CK-4951-01 20 644510 644510 C T SCRT2 Silent p.A243A 0.43 TCGA-CK-4951-01 20 644512 644512 C T SCRT2 Missense_Mutation p.A243T 0.44 deleterious(0) possibly_damaging(0.763) TCGA-CK-4951-01 20 865830 865830 G A ANGPT4 Silent p.R242R 0.26 TCGA-CK-4951-01 20 9546626 9546626 C T PAK7 Missense_Mutation p.A466T 0.26 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 21 16337773 16337773 C T NRIP1 Missense_Mutation p.G914D 0.29 tolerated(0.23) benign(0.107) TCGA-CK-4951-01 21 17199343 17199343 C T USP25 Missense_Mutation p.S505L 0.26 tolerated(0.07) possibly_damaging(0.849) TCGA-CK-4951-01 21 19165676 19165676 T C C21orf91 3'UTR 0.26 TCGA-CK-4951-01 21 19167574 19167574 A T C21orf91 Silent p.T226T 0.31 TCGA-CK-4951-01 21 31874295 31874295 G A KRTAP19-5 Silent p.G38G 0.21 TCGA-CK-4951-01 21 31965363 31965363 T C KRTAP6-3 3'UTR 0.39 TCGA-CK-4951-01 21 33720028 33720028 C T URB1 Silent p.T1035T 0.38 TCGA-CK-4951-01 21 33756637 33756637 T A URB1 Missense_Mutation p.Y140F 0.36 deleterious(0.04) possibly_damaging(0.714) TCGA-CK-4951-01 21 33887249 33887249 G T EVA1C Nonsense_Mutation p.E359* 0.33 TCGA-CK-4951-01 21 33949091 33949091 C - TCP10L Frame_Shift_Del p.G214Vfs*26 0.28 TCGA-CK-4951-01 21 33956553 33956553 C A TCP10L Missense_Mutation p.C21F 0.29 deleterious(0.02) possibly_damaging(0.858) TCGA-CK-4951-01 21 34134476 34134476 C T PAXBP1 Missense_Mutation p.D268N 0.31 deleterious(0.01) probably_damaging(0.918) TCGA-CK-4951-01 21 34443567 34443567 C T OLIG1 3'UTR 0.28 TCGA-CK-4951-01 21 34660504 34660504 G A IL10RB Missense_Mutation p.V248I 0.44 tolerated(1) benign(0) TCGA-CK-4951-01 21 34921813 34921813 C T SON Silent p.C92C 0.37 TCGA-CK-4951-01 21 34956960 34956960 T G DONSON Missense_Mutation p.M241L 0.33 tolerated(0.36) benign(0.009) TCGA-CK-4951-01 21 34967684 34967684 C A CRYZL1 Intron 0.24 TCGA-CK-4951-01 21 35144555 35144555 G A ITSN1 Silent p.K411K 0.33 TCGA-CK-4951-01 21 35189692 35189692 G C ITSN1 Intron 0.30 TCGA-CK-4951-01 21 35191586 35191586 G A ITSN1 Missense_Mutation p.R992Q 0.43 tolerated(0.3) benign(0.301) TCGA-CK-4951-01 21 35470772 35470772 T C SLC5A3 3'UTR 0.31 TCGA-CK-4951-01 21 35472010 35472010 T A SLC5A3 3'UTR 0.23 TCGA-CK-4951-01 21 35472390 35472390 T A SLC5A3 3'UTR 0.23 TCGA-CK-4951-01 21 35472641 35472641 T C SLC5A3 3'UTR 0.24 TCGA-CK-4951-01 21 36206899 36206899 C A RUNX1 Splice_Site p.X205_splice 0.30 TCGA-CK-4951-01 21 37507686 37507686 G A CBR3 Missense_Mutation p.D66N 0.25 tolerated(0.12) benign(0.012) TCGA-CK-4951-01 21 37595581 37595581 C T DOPEY2 Silent p.L435L 0.18 TCGA-CK-4951-01 21 37618886 37618886 G A DOPEY2 Nonsense_Mutation p.W1536* 0.25 TCGA-CK-4951-01 21 37660372 37660372 T - DOPEY2 Frame_Shift_Del p.F2076Sfs*6 0.27 TCGA-CK-4951-01 21 37766931 37766931 T A CHAF1B Missense_Mutation p.I155K 0.23 deleterious(0) possibly_damaging(0.653) TCGA-CK-4951-01 21 37766935 37766935 G A CHAF1B Nonsense_Mutation p.W156* 0.23 TCGA-CK-4951-01 21 37833883 37833883 G A CLDN14 Silent p.G37G 0.22 TCGA-CK-4951-01 21 38072216 38072216 C T SIM2 Missense_Mutation p.P57L 0.31 deleterious(0) probably_damaging(0.946) TCGA-CK-4951-01 21 38081491 38081491 C T SIM2 Missense_Mutation p.P67S 0.32 tolerated(0.43) benign(0.004) TCGA-CK-4951-01 21 38081499 38081499 C T SIM2 Silent p.R69R 0.33 TCGA-CK-4951-01 21 38098546 38098546 G A SIM2 Missense_Mutation p.E224K 0.38 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 21 38444843 38444843 G A PIGP Silent p.F15F 0.24 TCGA-CK-4951-01 21 39817512 39817512 C T ERG Silent p.S24S 0.25 TCGA-CK-4951-01 21 40194825 40194825 C T ETS2 3'UTR 0.20 TCGA-CK-4951-01 21 40685174 40685174 G A BRWD1 Missense_Mutation p.A34V 0.24 deleterious(0) probably_damaging(0.939) TCGA-CK-4951-01 21 40762703 40762703 C T WRB Missense_Mutation p.S61F 0.36 deleterious(0.01) possibly_damaging(0.701) TCGA-CK-4951-01 21 40768944 40768944 T - WRB 3'UTR 0.20 TCGA-CK-4951-01 21 41561090 41561090 G A DSCAM Missense_Mutation p.A811V 0.40 deleterious(0.03) probably_damaging(0.983) TCGA-CK-4951-01 21 42064772 42064772 C T DSCAM Missense_Mutation p.V158I 0.38 tolerated(0.15) possibly_damaging(0.545) TCGA-CK-4951-01 21 42064821 42064821 C T DSCAM Silent p.A141A 0.34 TCGA-CK-4951-01 21 42719013 42719013 C T FAM3B Silent p.D157D 0.32 TCGA-CK-4951-01 21 42866417 42866417 G T TMPRSS2 Missense_Mutation p.T72N 0.33 tolerated(1) benign(0.001) TCGA-CK-4951-01 21 43161150 43161150 C T RIPK4 Missense_Mutation p.G735R 0.10 deleterious(0) probably_damaging(0.962) TCGA-CK-4951-01 21 43161715 43161715 C A RIPK4 Missense_Mutation p.Q546H 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-CK-4951-01 21 43230639 43230639 G A PRDM15 Silent p.T1207T 0.35 TCGA-CK-4951-01 21 43259864 43259864 C - PRDM15 Frame_Shift_Del p.E613Nfs*35 0.21 TCGA-CK-4951-01 21 43412283 43412283 C T ZBTB21 Missense_Mutation p.R641H 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 21 43412891 43412891 C T ZBTB21 Silent p.S438S 0.36 TCGA-CK-4951-01 21 43531774 43531774 C T UMODL1 Silent p.D814D 0.30 TCGA-CK-4951-01 21 43767708 43767708 C G TFF2 Missense_Mutation p.R88P 0.31 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 21 43803187 43803187 A C TMPRSS3 Missense_Mutation p.V246G 0.24 deleterious(0) possibly_damaging(0.861) TCGA-CK-4951-01 21 44152021 44152021 C T PDE9A Missense_Mutation p.P135L 0.40 tolerated(0.51) benign(0.002) TCGA-CK-4951-01 21 44513258 44513258 C T U2AF1 Missense_Mutation p.R226H 0.32 tolerated(0.54) unknown(0) TCGA-CK-4951-01 21 44524437 44524437 C T U2AF1 Silent p.P40P 0.37 TCGA-CK-4951-01 21 44837487 44837487 G A SIK1 Missense_Mutation p.H638Y 0.32 tolerated_low_confidence(1) benign(0.142) TCGA-CK-4951-01 21 45170427 45170427 G T PDXK Splice_Site p.X170_splice 0.33 TCGA-CK-4951-01 21 45217848 45217848 G A RRP1 Silent p.P226P 0.30 TCGA-CK-4951-01 21 45389104 45389104 C T AGPAT3 Missense_Mutation p.R152W 0.38 deleterious(0) probably_damaging(0.927) TCGA-CK-4951-01 21 45479089 45479089 G A TRAPPC10 Missense_Mutation p.A262T 0.26 tolerated(0.06) probably_damaging(0.954) TCGA-CK-4951-01 21 45539396 45539396 G A PWP2 Missense_Mutation p.D394N 0.32 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 21 45542062 45542062 G A PWP2 Silent p.L547L 0.24 TCGA-CK-4951-01 21 45553589 45553589 G A C21orf33 Missense_Mutation p.V4M 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-CK-4951-01 21 45825823 45825823 T A TRPM2 Missense_Mutation p.I898N 0.19 deleterious(0) possibly_damaging(0.846) TCGA-CK-4951-01 21 45876653 45876653 C T LRRC3 Silent p.H42H 0.31 TCGA-CK-4951-01 21 45924672 45924672 A G TSPEAR Missense_Mutation p.I616T 0.19 deleterious(0.03) benign(0.253) TCGA-CK-4951-01 21 45987782 45987782 C A TSPEAR Missense_Mutation p.A64S 0.37 tolerated(0.96) benign(0.058) TCGA-CK-4951-01 21 46032234 46032234 G T KRTAP10-8 Missense_Mutation p.A73S 0.22 tolerated(0.32) benign(0.009) TCGA-CK-4951-01 21 46320315 46320315 C T ITGB2 Missense_Mutation p.G273R 0.29 deleterious(0.03) possibly_damaging(0.604) TCGA-CK-4951-01 21 46640906 46640906 C T ADARB1 Missense_Mutation p.R675C 0.30 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 21 46687468 46687468 C T POFUT2 Intron 0.25 TCGA-CK-4951-01 21 46918361 46918361 G T COL18A1 Intron 0.32 TCGA-CK-4951-01 21 46931095 46931095 G A COL18A1 Missense_Mutation p.R1435H 0.34 probably_damaging(0.969) TCGA-CK-4951-01 21 46951754 46951754 G A SLC19A1 Silent p.T166T 0.28 TCGA-CK-4951-01 21 47422230 47422230 G A COL6A1 Missense_Mutation p.R722H 0.39 deleterious(0.01) probably_damaging(0.947) TCGA-CK-4951-01 21 47545967 47545967 G A COL6A2 Silent p.A746A 0.27 TCGA-CK-4951-01 21 47695153 47695153 G A MCM3AP Missense_Mutation p.R649W 0.45 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 21 47731406 47731406 C T C21orf58 Missense_Mutation p.A229T 0.35 tolerated(0.08) benign(0.167) TCGA-CK-4951-01 21 47746420 47746420 G A PCNT Missense_Mutation p.A62T 0.31 benign(0.011) TCGA-CK-4951-01 21 47849936 47849936 C T PCNT Missense_Mutation p.A2568V 0.27 benign(0) TCGA-CK-4951-01 21 47865429 47865429 T A PCNT 3'UTR 0.55 TCGA-CK-4951-01 21 47974534 47974534 C T DIP2A Silent p.C1067C 0.45 TCGA-CK-4951-01 21 47987425 47987425 G A DIP2A Missense_Mutation p.D1536N 0.23 deleterious(0) probably_damaging(0.956) TCGA-CK-4951-01 21 48064295 48064295 C T PRMT2 Silent p.G74G 0.28 TCGA-CK-4951-01 21 48081783 48081783 C T PRMT2 Silent p.S344S 0.25 TCGA-CK-4951-01 22 17280746 17280746 C T XKR3 Silent p.V168V 0.30 TCGA-CK-4951-01 22 17983960 17983960 G A CECR2 Missense_Mutation p.R220H 0.23 deleterious(0) possibly_damaging(0.907) TCGA-CK-4951-01 22 18020238 18020238 G A CECR2 Missense_Mutation p.A524T 0.33 tolerated(0.67) benign(0.053) TCGA-CK-4951-01 22 18070835 18070835 G A SLC25A18 Silent p.T240T 0.34 TCGA-CK-4951-01 22 18300395 18300395 C T MICAL3 Missense_Mutation p.D1678N 0.26 possibly_damaging(0.89) TCGA-CK-4951-01 22 18363980 18363980 G A MICAL3 Intron 0.39 TCGA-CK-4951-01 22 19373234 19373234 C T HIRA Missense_Mutation p.G380D 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 22 19422296 19422296 A - MRPL40 Frame_Shift_Del p.D61Tfs*8 0.27 TCGA-CK-4951-01 22 19511248 19511248 G A CLDN5 Silent p.G262G 0.43 TCGA-CK-4951-01 22 19748729 19748729 G T TBX1 Silent p.V112V 0.17 TCGA-CK-4951-01 22 20130889 20130889 A G ZDHHC8 Missense_Mutation p.Y579C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 22 20132822 20132822 C T ZDHHC8 Intron 0.29 TCGA-CK-4951-01 22 20229444 20229444 C T RTN4R Silent p.E404E 0.24 TCGA-CK-4951-01 22 20230261 20230261 A G RTN4R Missense_Mutation p.L132P 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 22 20394516 20394516 T C PI4KAP1 Intron 0.19 TCGA-CK-4951-01 22 20784840 20784840 C T SCARF2 Missense_Mutation p.E360K 0.31 deleterious(0) probably_damaging(0.921) TCGA-CK-4951-01 22 20920859 20920859 G A MED15 Missense_Mutation p.A266T 0.31 tolerated_low_confidence(0.35) unknown(0) TCGA-CK-4951-01 22 20936898 20936898 G A MED15 Missense_Mutation p.V425I 0.29 deleterious_low_confidence(0.05) unknown(0) TCGA-CK-4951-01 22 21322161 21322161 G - AIFM3 5'UTR 0.29 TCGA-CK-4951-01 22 21327621 21327621 G A AIFM3 Silent p.L19L 0.32 TCGA-CK-4951-01 22 21363503 21363503 G A AC002472.1 5'Flank 0.31 TCGA-CK-4951-01 22 21800841 21800841 C T HIC2 Missense_Mutation p.R553W 0.20 deleterious(0) probably_damaging(0.965) TCGA-CK-4951-01 22 21988347 21988347 C T CCDC116 Missense_Mutation p.R37W 0.30 deleterious(0.01) possibly_damaging(0.599) TCGA-CK-4951-01 22 21991518 21991518 C T CCDC116 3'UTR 0.38 TCGA-CK-4951-01 22 21997239 21997239 C T SDF2L1 Silent p.C92C 0.37 TCGA-CK-4951-01 22 22040820 22040820 A C PPIL2 Missense_Mutation p.M255L 0.19 deleterious(0.03) benign(0.02) TCGA-CK-4951-01 22 22042373 22042373 C A PPIL2 Silent p.G333G 0.19 TCGA-CK-4951-01 22 22123577 22123577 C T MAPK1 Missense_Mutation p.M333I 0.38 tolerated(0.17) benign(0.002) TCGA-CK-4951-01 22 22313574 22313574 G A TOP3B Missense_Mutation p.S612L 0.25 deleterious(0) benign(0.158) TCGA-CK-4951-01 22 22599488 22599488 G T VPREB1 Missense_Mutation p.Q59H 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-CK-4951-01 22 23466428 23466428 G A RTDR1 Intron 0.46 TCGA-CK-4951-01 22 23524029 23524029 C T BCR Silent p.G294G 0.23 TCGA-CK-4951-01 22 23741963 23741963 G A ZDHHC8P1 RNA 0.35 TCGA-CK-4951-01 22 24036041 24036041 T C RGL4 Silent p.R264R 0.16 TCGA-CK-4951-01 22 24106988 24106988 C T C22orf15 Missense_Mutation p.R112C 0.27 tolerated(0.14) benign(0.004) TCGA-CK-4951-01 22 24145519 24145519 G A SMARCB1 Missense_Mutation p.A180T 0.39 deleterious(0) possibly_damaging(0.869) TCGA-CK-4951-01 22 24145525 24145525 C T SMARCB1 Nonsense_Mutation p.Q182* 0.26 TCGA-CK-4951-01 22 24167420 24167420 C T SMARCB1 Silent p.I268I 0.35 TCGA-CK-4951-01 22 24494008 24494008 C T CABIN1 Missense_Mutation p.H1324Y 0.30 tolerated(0.52) possibly_damaging(0.521) TCGA-CK-4951-01 22 24561521 24561521 G A CABIN1 Missense_Mutation p.R1645H 0.25 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 22 24562970 24562970 G A CABIN1 Missense_Mutation p.E1791K 0.41 tolerated_low_confidence(0.16) benign(0.254) TCGA-CK-4951-01 22 24580232 24580232 C A SUSD2 Missense_Mutation p.Q190K 0.35 tolerated(0.75) benign(0.003) TCGA-CK-4951-01 22 24627418 24627418 T C GGT5 Missense_Mutation p.T279A 0.27 deleterious(0.03) possibly_damaging(0.903) TCGA-CK-4951-01 22 24656964 24656964 G A POM121L9P RNA 0.17 TCGA-CK-4951-01 22 24726351 24726351 A - SPECC1L Frame_Shift_Del p.N785Mfs*11 0.25 TCGA-CK-4951-01 22 24951666 24951666 G A GUCD1 5'Flank 0.21 TCGA-CK-4951-01 22 24968181 24968181 G - SNRPD3 3'UTR 0.22 TCGA-CK-4951-01 22 24985153 24985153 G A FAM211B Intron 0.21 TCGA-CK-4951-01 22 25016298 25016298 G A GGT1 Missense_Mutation p.G129E 0.29 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 22 25019123 25019123 C T GGT1 Silent p.I261I 0.20 TCGA-CK-4951-01 22 25747821 25747821 G A LRP5L Missense_Mutation p.S235F 0.31 tolerated(0.29) benign(0.001) TCGA-CK-4951-01 22 25755868 25755868 G A LRP5L Silent p.N64N 0.38 TCGA-CK-4951-01 22 26059597 26059597 C T ADRBK2 Missense_Mutation p.P123S 0.33 tolerated(0.26) benign(0.002) TCGA-CK-4951-01 22 26164407 26164407 C - MYO18B Frame_Shift_Del p.P177Lfs*55 0.25 TCGA-CK-4951-01 22 26761471 26761471 G A SEZ6L Silent p.V911V 0.21 TCGA-CK-4951-01 22 26888298 26888298 G A TFIP11 Missense_Mutation p.A732V 0.22 deleterious(0.01) benign(0.129) TCGA-CK-4951-01 22 28394897 28394897 G T TTC28 Silent p.R1584R 0.32 TCGA-CK-4951-01 22 28559376 28559376 T A TTC28 Missense_Mutation p.K382M 0.34 deleterious(0.04) possibly_damaging(0.838) TCGA-CK-4951-01 22 29153373 29153373 C T HSCB 3'UTR 0.35 TCGA-CK-4951-01 22 29537971 29537971 T A KREMEN1 Nonsense_Mutation p.C433* 0.38 TCGA-CK-4951-01 22 29707471 29707471 C T GAS2L1 3'UTR 0.35 TCGA-CK-4951-01 22 29708273 29708273 G - GAS2L1 3'Flank 0.18 TCGA-CK-4951-01 22 29726453 29726453 C T AP1B1 Missense_Mutation p.D894N 0.35 deleterious(0.01) possibly_damaging(0.862) TCGA-CK-4951-01 22 30069434 30069434 C T NF2 Silent p.A433A 0.38 TCGA-CK-4951-01 22 30144434 30144434 T G ZMAT5 Missense_Mutation p.K34Q 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-CK-4951-01 22 30662779 30662779 G A OSM Silent p.L4L 0.38 TCGA-CK-4951-01 22 30688801 30688801 C T TBC1D10A Missense_Mutation p.E371K 0.26 deleterious(0) probably_damaging(0.957) TCGA-CK-4951-01 22 30885843 30885843 G A SEC14L4 3'UTR 0.24 TCGA-CK-4951-01 22 30951059 30951059 G A GAL3ST1 Missense_Mutation p.R385W 0.24 deleterious(0.01) possibly_damaging(0.773) TCGA-CK-4951-01 22 30951107 30951107 C T GAL3ST1 Missense_Mutation p.G369S 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 22 30951756 30951756 C T GAL3ST1 Silent p.L152L 0.34 TCGA-CK-4951-01 22 30976055 30976055 G A PES1 Missense_Mutation p.T385I 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-CK-4951-01 22 31283569 31283569 G A OSBP2 Missense_Mutation p.G422S 0.27 tolerated(0.49) benign(0.041) TCGA-CK-4951-01 22 31500418 31500418 G A SMTN Missense_Mutation p.R930H 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-CK-4951-01 22 31500470 31500470 C T SMTN 3'UTR 0.26 TCGA-CK-4951-01 22 31523956 31523956 G A INPP5J Missense_Mutation p.D235N 0.39 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 22 31621719 31621719 G A RNU6-1128P 5'Flank 0.37 TCGA-CK-4951-01 22 31836852 31836852 C T EIF4ENIF1 Missense_Mutation p.V852M 0.29 tolerated(1) benign(0.002) TCGA-CK-4951-01 22 31836854 31836854 C T EIF4ENIF1 Missense_Mutation p.G851D 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 22 31837795 31837795 A G EIF4ENIF1 Missense_Mutation p.V839A 0.28 deleterious(0.03) benign(0.036) TCGA-CK-4951-01 22 31839046 31839046 C T EIF4ENIF1 Missense_Mutation p.R703H 0.30 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 22 32134691 32134691 G C PRR14L Silent p.A52A 0.53 TCGA-CK-4951-01 22 32200206 32200206 C A DEPDC5 Missense_Mutation p.F380L 0.25 tolerated(0.99) benign(0.401) TCGA-CK-4951-01 22 32293519 32293519 G C DEPDC5 Missense_Mutation p.V1410L 0.25 tolerated(0.06) benign(0.403) TCGA-CK-4951-01 22 32631005 32631005 T C SLC5A4 Missense_Mutation p.D247G 0.12 tolerated(0.87) possibly_damaging(0.898) TCGA-CK-4951-01 22 32841932 32841932 A G BPIFC Silent p.G142G 0.22 TCGA-CK-4951-01 22 36661459 36661459 G A APOL1 Missense_Mutation p.G209S 0.35 tolerated(0.07) benign(0.3) TCGA-CK-4951-01 22 36681784 36681784 C T MYH9 Missense_Mutation p.A1732T 0.33 benign(0.013) TCGA-CK-4951-01 22 36684866 36684866 C T MYH9 Silent p.E1559E 0.24 TCGA-CK-4951-01 22 36721096 36721096 C T MYH9 Intron 0.40 TCGA-CK-4951-01 22 36897402 36897402 G A FOXRED2 Nonsense_Mutation p.R368* 0.31 TCGA-CK-4951-01 22 36960340 36960340 G A CACNG2 3'UTR 0.29 TCGA-CK-4951-01 22 37271769 37271769 C T NCF4 Silent p.D234D 0.18 TCGA-CK-4951-01 22 37902360 37902360 G A CARD10 Nonsense_Mutation p.Q408* 0.25 TCGA-CK-4951-01 22 38013057 38013057 G A GGA1 Intron 0.40 TCGA-CK-4951-01 22 38014474 38014474 A G GGA1 Missense_Mutation p.K75R 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-CK-4951-01 22 38038436 38038436 A T SH3BP1 Intron 0.19 TCGA-CK-4951-01 22 38044360 38044360 G A SH3BP1 Missense_Mutation p.E412K 0.28 tolerated(0.12) benign(0.403) TCGA-CK-4951-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.38 TCGA-CK-4951-01 22 38131297 38131297 G T TRIOBP Missense_Mutation p.V1652F 0.29 deleterious_low_confidence(0) benign(0.087) TCGA-CK-4951-01 22 38136979 38136979 G A TRIOBP Silent p.G1754G 0.34 TCGA-CK-4951-01 22 38209592 38209592 A G GCAT Silent p.L210L 0.27 TCGA-CK-4951-01 22 38270510 38270510 G A EIF3L Silent p.E295E 0.27 TCGA-CK-4951-01 22 38352792 38352792 C T POLR2F Silent p.D11D 0.34 TCGA-CK-4951-01 22 38355402 38355402 C T POLR2F Missense_Mutation p.A47V 0.28 tolerated(0.14) benign(0.006) TCGA-CK-4951-01 22 38355446 38355446 C T POLR2F Nonsense_Mutation p.R62* 0.36 TCGA-CK-4951-01 22 38470876 38470876 G A PICK1 Missense_Mutation p.D329N 0.38 deleterious(0.05) possibly_damaging(0.582) TCGA-CK-4951-01 22 38471103 38471103 G A PICK1 Silent p.G404G 0.35 TCGA-CK-4951-01 22 38484842 38484842 A T BAIAP2L2 Missense_Mutation p.L344Q 0.27 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 22 38528971 38528971 G A PLA2G6 Missense_Mutation p.S315F 0.37 tolerated(0.11) benign(0.002) TCGA-CK-4951-01 22 38528988 38528988 G A PLA2G6 Silent p.N309N 0.19 TCGA-CK-4951-01 22 38611058 38611058 C T MAFF 3'UTR 0.27 TCGA-CK-4951-01 22 38627325 38627325 T C TMEM184B Missense_Mutation p.N125S 0.19 tolerated(0.57) benign(0.023) TCGA-CK-4951-01 22 38823631 38823631 G A KCNJ4 Silent p.G169G 0.31 TCGA-CK-4951-01 22 38890747 38890747 C T DDX17 Missense_Mutation p.E368K 0.31 tolerated(0.05) benign(0.326) TCGA-CK-4951-01 22 38902093 38902093 C T DDX17 Silent p.P50P 0.33 TCGA-CK-4951-01 22 39134615 39134615 C T SUN2 Missense_Mutation p.A663T 0.43 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 22 39262094 39262094 G A CBX6 3'UTR 0.25 TCGA-CK-4951-01 22 39475018 39475018 C T APOBEC3G Silent p.V33V 0.31 TCGA-CK-4951-01 22 39475031 39475031 G A APOBEC3G Missense_Mutation p.E38K 0.28 tolerated(0.22) benign(0.28) TCGA-CK-4951-01 22 39777942 39777942 G T SYNGR1 3'UTR 0.33 TCGA-CK-4951-01 22 39883349 39883349 C T MGAT3 Intron 0.15 TCGA-CK-4951-01 22 39883667 39883667 C T MGAT3 Silent p.T105T 0.33 TCGA-CK-4951-01 22 39883741 39883741 C T MGAT3 Missense_Mutation p.P130L 0.31 tolerated_low_confidence(0.29) benign(0) TCGA-CK-4951-01 22 39908380 39908380 C A MIEF1 Silent p.R156R 0.32 TCGA-CK-4951-01 22 39917399 39917399 A G ATF4 5'UTR 0.58 TCGA-CK-4951-01 22 40417494 40417494 A T FAM83F Missense_Mutation p.Y327F 0.21 deleterious(0) probably_damaging(0.984) TCGA-CK-4951-01 22 40661386 40661386 T C TNRC6B Silent p.S384S 0.36 TCGA-CK-4951-01 22 40757176 40757176 C A ADSL Intron 0.29 TCGA-CK-4951-01 22 40805709 40805709 C T SGSM3 Silent p.G732G 0.23 TCGA-CK-4951-01 22 41077483 41077483 C A MCHR1 Missense_Mutation p.L274I 0.53 tolerated(1) benign(0.015) TCGA-CK-4951-01 22 41077899 41077899 T C MCHR1 Silent p.A412A 0.27 TCGA-CK-4951-01 22 41574480 41574480 C G EP300 Silent p.A2255A 0.34 TCGA-CK-4951-01 22 41634561 41634561 T A CHADL Missense_Mutation p.Y172F 0.27 deleterious(0.01) probably_damaging(0.934) TCGA-CK-4951-01 22 41652026 41652026 T A RANGAP1 Missense_Mutation p.S358C 0.25 deleterious(0) probably_damaging(0.945) TCGA-CK-4951-01 22 41735165 41735165 C G ZC3H7B Silent p.G262G 0.23 TCGA-CK-4951-01 22 41752437 41752437 G T ZC3H7B Missense_Mutation p.G825V 0.37 tolerated(0.17) benign(0.059) TCGA-CK-4951-01 22 42003267 42003267 G - DESI1 Frame_Shift_Del p.P60Rfs*60 0.27 TCGA-CK-4951-01 22 42095667 42095667 G C MEI1 Missense_Mutation p.R42P 0.25 tolerated(0.32) probably_damaging(0.997) TCGA-CK-4951-01 22 42125754 42125754 C T MEI1 Missense_Mutation p.A317V 0.17 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 22 42271596 42271596 C T SREBF2 Silent p.D418D 0.27 TCGA-CK-4951-01 22 42273331 42273331 C T SREBF2 Silent p.N495N 0.26 TCGA-CK-4951-01 22 42273334 42273334 C T SREBF2 Silent p.P496P 0.28 TCGA-CK-4951-01 22 42301697 42301697 C T SREBF2 3'UTR 0.23 TCGA-CK-4951-01 22 42321330 42321330 G A TNFRSF13C 3'UTR 0.28 TCGA-CK-4951-01 22 42336178 42336178 T A CENPM Intron 0.29 TCGA-CK-4951-01 22 42393056 42393056 C G SEPT3 3'UTR 0.27 TCGA-CK-4951-01 22 42463259 42463259 C T NAGA Silent p.A120A 0.15 TCGA-CK-4951-01 22 43447836 43447836 C T TTLL1 Missense_Mutation p.D317N 0.28 deleterious(0.02) probably_damaging(0.976) TCGA-CK-4951-01 22 43460249 43460249 G A TTLL1 Silent p.F195F 0.38 TCGA-CK-4951-01 22 43558971 43558971 C T TSPO Missense_Mutation p.R162C 0.34 deleterious(0) possibly_damaging(0.614) TCGA-CK-4951-01 22 43575672 43575672 G T TTLL12 Missense_Mutation p.L265M 0.40 tolerated(0.11) benign(0.289) TCGA-CK-4951-01 22 43575678 43575678 C T TTLL12 Missense_Mutation p.D263N 0.37 tolerated(0.12) benign(0.085) TCGA-CK-4951-01 22 43575953 43575953 C T TTLL12 Silent p.R200R 0.33 TCGA-CK-4951-01 22 43607013 43607013 G A SCUBE1 Silent p.P766P 0.28 TCGA-CK-4951-01 22 44028029 44028029 C T EFCAB6 Missense_Mutation p.E730K 0.30 deleterious(0) probably_damaging(0.983) TCGA-CK-4951-01 22 44063113 44063113 C T EFCAB6 Silent p.K618K 0.35 TCGA-CK-4951-01 22 44582454 44582454 C T PARVG Intron 0.53 TCGA-CK-4951-01 22 44681359 44681359 C T KIAA1644 Missense_Mutation p.R183Q 0.25 tolerated_low_confidence(0.44) benign(0.002) TCGA-CK-4951-01 22 45574272 45574272 G A NUP50 Missense_Mutation p.C165Y 0.25 tolerated(0.07) possibly_damaging(0.762) TCGA-CK-4951-01 22 45959204 45959204 G A FBLN1 Intron 0.29 TCGA-CK-4951-01 22 46505893 46505893 A G FLJ27365 3'UTR 0.34 TCGA-CK-4951-01 22 46611141 46611141 C T PPARA Missense_Mutation p.P94S 0.14 tolerated(1) benign(0.001) TCGA-CK-4951-01 22 46655816 46655816 T C PKDREJ Missense_Mutation p.K1135R 0.16 tolerated(0.69) benign(0.006) TCGA-CK-4951-01 22 46657774 46657774 G A PKDREJ Silent p.C482C 0.24 TCGA-CK-4951-01 22 46658485 46658485 C T PKDREJ Silent p.V245V 0.33 TCGA-CK-4951-01 22 46762328 46762328 C T CELSR1 Missense_Mutation p.R2752H 0.30 tolerated(0.16) probably_damaging(0.991) TCGA-CK-4951-01 22 46930922 46930922 C T CELSR1 Missense_Mutation p.A716T 0.34 tolerated(0.05) possibly_damaging(0.625) TCGA-CK-4951-01 22 46932299 46932299 T A CELSR1 Missense_Mutation p.N257Y 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 22 47097571 47097571 G A CERK Missense_Mutation p.T251I 0.36 tolerated(0.57) benign(0.019) TCGA-CK-4951-01 22 48972290 48972290 G A FAM19A5 Intron 0.42 TCGA-CK-4951-01 22 50181531 50181531 A T BRD1 Intron 0.43 TCGA-CK-4951-01 22 50191623 50191623 G A BRD1 Missense_Mutation p.A643V 0.51 deleterious(0) possibly_damaging(0.885) TCGA-CK-4951-01 22 50217375 50217375 C T BRD1 Silent p.S197S 0.23 TCGA-CK-4951-01 22 50217941 50217941 G A BRD1 Nonsense_Mutation p.R9* 0.24 TCGA-CK-4951-01 22 50280636 50280636 C T ZBED4 Missense_Mutation p.A1109V 0.26 tolerated(0.29) benign(0.009) TCGA-CK-4951-01 22 50500029 50500029 C G MLC1 Missense_Mutation p.V373L 0.50 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CK-4951-01 22 50616284 50616284 G A PANX2 Silent p.Q381Q 0.55 TCGA-CK-4951-01 22 50655697 50655697 G A SELO Missense_Mutation p.A637T 0.33 tolerated(0.54) benign(0.002) TCGA-CK-4951-01 22 50658168 50658168 G A TUBGCP6 Missense_Mutation p.S1407L 0.27 tolerated(0.28) benign(0.041) TCGA-CK-4951-01 22 50687801 50687801 G A HDAC10 Missense_Mutation p.R216W 0.36 deleterious(0.01) probably_damaging(0.954) TCGA-CK-4951-01 22 50687809 50687809 G A HDAC10 Missense_Mutation p.A213V 0.34 tolerated(0.19) benign(0.05) TCGA-CK-4951-01 22 50689307 50689307 C T HDAC10 Silent p.E29E 0.14 TCGA-CK-4951-01 22 50689337 50689337 G A HDAC10 Intron 0.34 TCGA-CK-4951-01 22 50716343 50716343 C T PLXNB2 Missense_Mutation p.E1663K 0.20 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 22 50716410 50716410 G A PLXNB2 Silent p.F1640F 0.21 TCGA-CK-4951-01 22 50719016 50719016 G A PLXNB2 Silent p.H1359H 0.25 TCGA-CK-4951-01 22 50719065 50719065 G A PLXNB2 Missense_Mutation p.S1343L 0.17 deleterious(0) probably_damaging(0.983) TCGA-CK-4951-01 22 50719270 50719270 G A PLXNB2 Missense_Mutation p.T1299I 0.31 tolerated(0.07) probably_damaging(0.959) TCGA-CK-4951-01 22 50723068 50723068 G A PLXNB2 Silent p.D705D 0.32 TCGA-CK-4951-01 22 50724456 50724456 G A PLXNB2 Missense_Mutation p.S650L 0.17 tolerated(0.06) probably_damaging(0.997) TCGA-CK-4951-01 22 50728093 50728093 G - PLXNB2 Frame_Shift_Del p.G308Vfs*83 0.25 TCGA-CK-4951-01 22 50728652 50728652 G T PLXNB2 Missense_Mutation p.A121D 0.17 tolerated(0.17) probably_damaging(0.946) TCGA-CK-4951-01 22 50728978 50728978 G T PLXNB2 Silent p.G12G 0.33 TCGA-CK-4951-01 22 50921291 50921291 T A ADM2 Missense_Mutation p.S136T 0.34 tolerated(0.16) benign(0.013) TCGA-CK-4951-01 22 50941953 50941953 G A LMF2 Missense_Mutation p.S664F 0.31 tolerated(0.18) benign(0.006) TCGA-CK-4951-01 22 50961539 50961539 G A NCAPH2 Missense_Mutation p.V542M 0.27 deleterious(0.03) possibly_damaging(0.891) TCGA-CK-4951-01 22 50989043 50989043 C T KLHDC7B 3'UTR 0.27 TCGA-CK-4951-01 22 51017519 51017519 C T CHKB 3'UTR 0.26 TCGA-CK-4951-01 22 51064374 51064374 C T ARSA Missense_Mutation p.G366D 0.30 tolerated(0.31) benign(0.008) TCGA-CK-4951-01 22 51160464 51160464 C T SHANK3 Silent p.D1417D 0.22 TCGA-CK-4951-01 2 10091933 10091933 T A GRHL1 5'UTR 0.34 TCGA-CK-4951-01 2 101009781 101009781 G A CHST10 Nonsense_Mutation p.R333* 0.30 TCGA-CK-4951-01 2 101638824 101638824 T A TBC1D8 Missense_Mutation p.I879F 0.31 tolerated(0.08) benign(0.197) TCGA-CK-4951-01 2 102448275 102448275 G A MAP4K4 Missense_Mutation p.A201T 0.25 deleterious_low_confidence(0) unknown(0) TCGA-CK-4951-01 2 102493578 102493578 G A MAP4K4 Missense_Mutation p.E974K 0.27 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-CK-4951-01 2 102641127 102641127 G A IL1R2 Missense_Mutation p.R295H 0.30 tolerated(0.16) benign(0.033) TCGA-CK-4951-01 2 105886122 105886122 G A TGFBRAP1 Silent p.I671I 0.25 TCGA-CK-4951-01 2 107460175 107460175 C T ST6GAL2 Missense_Mutation p.G87S 0.30 benign(0.002) TCGA-CK-4951-01 2 109087448 109087448 C T GCC2 Missense_Mutation p.P555S 0.69 tolerated(0.49) benign(0.255) TCGA-CK-4951-01 2 109381933 109381933 C G RANBP2 Silent p.A1646A 0.26 TCGA-CK-4951-01 2 109432538 109432538 G A CCDC138 Missense_Mutation p.D395N 0.29 tolerated(0.3) possibly_damaging(0.728) TCGA-CK-4951-01 2 110374630 110374630 G A SOWAHC 3'UTR 0.26 TCGA-CK-4951-01 2 11054133 11054133 C T KCNF1 3'UTR 0.21 TCGA-CK-4951-01 2 110881625 110881625 G T NPHP1 Missense_Mutation p.L649M 0.41 tolerated(0.16) probably_damaging(0.98) TCGA-CK-4951-01 2 111430295 111430295 A T BUB1 Missense_Mutation p.L122H 0.31 deleterious(0) probably_damaging(0.987) TCGA-CK-4951-01 2 111907692 111907692 G A BCL2L11 Missense_Mutation p.G156R 0.26 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 112922719 112922719 C T FBLN7 Missense_Mutation p.T126I 0.40 deleterious(0) possibly_damaging(0.827) TCGA-CK-4951-01 2 113082701 113082701 A G ZC3H6 Silent p.R671R 0.31 TCGA-CK-4951-01 2 113191024 113191024 G A RGPD8 Missense_Mutation p.R3C 0.20 deleterious(0) probably_damaging(0.973) TCGA-CK-4951-01 2 113940973 113940973 G A PSD4 Missense_Mutation p.G314R 0.29 deleterious_low_confidence(0.04) benign(0.263) TCGA-CK-4951-01 2 114257109 114257109 G A FOXD4L1 Silent p.P92P 0.15 TCGA-CK-4951-01 2 114501321 114501321 T C SLC35F5 Silent p.K177K 0.26 TCGA-CK-4951-01 2 11597343 11597343 A T E2F6 Missense_Mutation p.I42N 0.33 tolerated(0.17) benign(0.405) TCGA-CK-4951-01 2 11758444 11758444 A T GREB1 Missense_Mutation p.Q1148L 0.36 tolerated(0.23) benign(0.286) TCGA-CK-4951-01 2 118864325 118864325 G A INSIG2 Missense_Mutation p.D128N 0.23 deleterious(0.04) benign(0.108) TCGA-CK-4951-01 2 119604328 119604328 C T EN1 Missense_Mutation p.G139E 0.21 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-CK-4951-01 2 120005695 120005695 C T STEAP3 Silent p.F321F 0.33 TCGA-CK-4951-01 2 120850850 120850850 T A EPB41L5 Silent p.L392L 0.23 TCGA-CK-4951-01 2 121106959 121106959 C T INHBB Nonsense_Mutation p.R245* 0.25 TCGA-CK-4951-01 2 121747509 121747509 T A GLI2 Missense_Mutation p.V1340D 0.36 tolerated_low_confidence(0.24) benign(0.01) TCGA-CK-4951-01 2 122489722 122489722 A G NIFK Missense_Mutation p.I101T 0.32 deleterious(0.01) possibly_damaging(0.823) TCGA-CK-4951-01 2 125504942 125504942 C T CNTNAP5 Silent p.C737C 0.37 TCGA-CK-4951-01 2 125672808 125672808 C T CNTNAP5 3'UTR 0.33 TCGA-CK-4951-01 2 128186093 128186093 C T PROC Silent p.C319C 0.22 TCGA-CK-4951-01 2 128253599 128253599 A T IWS1 Missense_Mutation p.I564N 0.10 deleterious(0) probably_damaging(0.962) TCGA-CK-4951-01 2 128262695 128262695 C T IWS1 Missense_Mutation p.D262N 0.32 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CK-4951-01 2 128341758 128341758 G A MYO7B Missense_Mutation p.V469M 0.38 deleterious(0) probably_damaging(0.978) TCGA-CK-4951-01 2 128380909 128380909 G A MYO7B Missense_Mutation p.D1234N 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 2 128389248 128389248 C T MYO7B Silent p.F1697F 0.33 TCGA-CK-4951-01 2 128408418 128408418 T C GPR17 Missense_Mutation p.F65L 0.34 tolerated(0.08) benign(0.17) TCGA-CK-4951-01 2 128495443 128495443 A T WDR33 Intron 0.19 TCGA-CK-4951-01 2 128495466 128495466 A T WDR33 Intron 0.15 TCGA-CK-4951-01 2 128608209 128608209 T C POLR2D Missense_Mutation p.N102S 0.44 deleterious(0) probably_damaging(0.961) TCGA-CK-4951-01 2 130911303 130911303 G A SMPD4 Missense_Mutation p.A661V 0.21 deleterious(0.03) possibly_damaging(0.763) TCGA-CK-4951-01 2 130939493 130939493 T A SMPD4 5'UTR 0.23 TCGA-CK-4951-01 2 131672942 131672942 G A ARHGEF4 5'Flank 0.44 TCGA-CK-4951-01 2 132021820 132021820 C T POTEE Missense_Mutation p.A931V 0.18 deleterious_low_confidence(0) benign(0.336) TCGA-CK-4951-01 2 132275398 132275398 C T AC093838.4 RNA 0.27 TCGA-CK-4951-01 2 135199356 135199356 C T MGAT5 Missense_Mutation p.P633S 0.36 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 2 136033212 136033212 T A ZRANB3 Missense_Mutation p.E360D 0.23 tolerated(0.09) possibly_damaging(0.898) TCGA-CK-4951-01 2 1371114 1371114 G T SNTG2 Splice_Site p.X497_splice 0.29 TCGA-CK-4951-01 2 140990893 140990893 T A LRP1B Silent p.P4554P 0.20 TCGA-CK-4951-01 2 141055387 141055387 T C LRP1B Silent p.R4319R 0.21 TCGA-CK-4951-01 2 141055397 141055397 G A LRP1B Missense_Mutation p.T4316I 0.22 possibly_damaging(0.507) TCGA-CK-4951-01 2 141598602 141598602 T A LRP1B Missense_Mutation p.S1667C 0.22 possibly_damaging(0.7) TCGA-CK-4951-01 2 141607856 141607856 C T LRP1B Missense_Mutation p.R1585K 0.23 benign(0.067) TCGA-CK-4951-01 2 141812796 141812796 C A LRP1B Nonsense_Mutation p.G481* 0.32 TCGA-CK-4951-01 2 148657040 148657041 - A ACVR2A Frame_Shift_Ins p.D96Rfs*4 0.26 TCGA-CK-4951-01 2 149633135 149633135 C T KIF5C 5'UTR 0.47 TCGA-CK-4951-01 2 152348990 152348990 A G NEB Missense_Mutation p.F8262L 0.17 probably_damaging(0.964) TCGA-CK-4951-01 2 152499365 152499365 A T NEB Missense_Mutation p.W2727R 0.21 probably_damaging(1) TCGA-CK-4951-01 2 152499375 152499375 A G NEB Silent p.Y2723Y 0.22 TCGA-CK-4951-01 2 152550949 152550949 A G NEB Missense_Mutation p.V595A 0.33 probably_damaging(0.989) TCGA-CK-4951-01 2 152553250 152553250 C T NEB Splice_Site p.X491_splice 0.05 TCGA-CK-4951-01 2 155566308 155566308 T C KCNJ3 Missense_Mutation p.L299P 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 155566310 155566310 G C KCNJ3 Missense_Mutation p.E300Q 0.47 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 2 157184927 157184927 A G NR4A2 Missense_Mutation p.M328T 0.39 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 2 158300464 158300464 C T CYTIP Silent p.A23A 0.21 TCGA-CK-4951-01 2 158412806 158412806 C T ACVR1C Missense_Mutation p.A115T 0.22 tolerated(0.26) benign(0) TCGA-CK-4951-01 2 160087174 160087174 G C TANC1 Missense_Mutation p.C1746S 0.28 tolerated_low_confidence(1) benign(0.001) TCGA-CK-4951-01 2 160087178 160087178 G A TANC1 Silent p.P1747P 0.23 TCGA-CK-4951-01 2 161030540 161030540 T C ITGB6 Missense_Mutation p.N235S 0.09 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 2 164467481 164467481 G - FIGN Frame_Shift_Del p.T288Pfs*13 0.24 TCGA-CK-4951-01 2 165353718 165353718 T A GRB14 Intron 0.21 TCGA-CK-4951-01 2 166032817 166032817 C T SCN3A Missense_Mutation p.A30T 0.31 tolerated(0.06) possibly_damaging(0.867) TCGA-CK-4951-01 2 166179839 166179839 C A SCN2A Missense_Mutation p.H615Q 0.33 tolerated(0.39) benign(0.056) TCGA-CK-4951-01 2 166606332 166606332 C A GALNT3 Missense_Mutation p.G567C 0.27 deleterious(0) possibly_damaging(0.653) TCGA-CK-4951-01 2 166930072 166930072 T A SCN1A Missense_Mutation p.E20D 0.26 tolerated(0.09) probably_damaging(0.986) TCGA-CK-4951-01 2 167094668 167094668 A T SCN9A Missense_Mutation p.I1235K 0.06 deleterious(0) benign(0.049) TCGA-CK-4951-01 2 167099082 167099082 T C SCN9A Missense_Mutation p.Y1175C 0.31 tolerated(0.07) possibly_damaging(0.867) TCGA-CK-4951-01 2 167143037 167143037 T C SCN9A Missense_Mutation p.K471E 0.30 deleterious(0.03) benign(0.375) TCGA-CK-4951-01 2 167301509 167301509 T C SCN7A Silent p.E463E 0.27 TCGA-CK-4951-01 2 167319038 167319038 T A SCN7A Missense_Mutation p.Q315L 0.28 tolerated(0.1) benign(0.186) TCGA-CK-4951-01 2 170030622 170030622 G A LRP2 Silent p.I3607I 0.29 TCGA-CK-4951-01 2 171713539 171713539 A T GAD1 Silent p.G475G 0.35 TCGA-CK-4951-01 2 171806773 171806773 A G GORASP2 Missense_Mutation p.I136M 0.33 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 2 172379184 172379184 C T CYBRD1 Silent p.S43S 0.29 TCGA-CK-4951-01 2 172647992 172647992 A G SLC25A12 Silent p.G518G 0.16 TCGA-CK-4951-01 2 173825909 173825909 A G RAPGEF4 Silent p.R217R 0.42 TCGA-CK-4951-01 2 174830022 174830022 T - SP3 5'UTR 0.33 TCGA-CK-4951-01 2 174987912 174987912 T C OLA1 Missense_Mutation p.K242E 0.27 deleterious(0.02) benign(0.154) TCGA-CK-4951-01 2 175213468 175213468 G A CIR1 Silent p.G370G 0.31 TCGA-CK-4951-01 2 175324815 175324815 A C GPR155 Missense_Mutation p.M521R 0.35 deleterious(0.02) benign(0.001) TCGA-CK-4951-01 2 175622346 175622346 T - CHRNA1 Frame_Shift_Del p.I123Ffs*67 0.21 TCGA-CK-4951-01 2 176958177 176958177 G A HOXD13 Missense_Mutation p.A187T 0.36 tolerated(0.09) benign(0.046) TCGA-CK-4951-01 2 176964533 176964533 T C HOXD12 Missense_Mutation p.C2R 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 2 176987501 176987501 T A HOXD9 Nonsense_Mutation p.L2* 0.23 TCGA-CK-4951-01 2 176987504 176987504 G A HOXD9 Missense_Mutation p.G3D 0.27 tolerated_low_confidence(0.17) probably_damaging(0.931) TCGA-CK-4951-01 2 177034143 177034143 G - HOXD3 Frame_Shift_Del p.G102Vfs*9 0.22 TCGA-CK-4951-01 2 177054935 177054935 A T HOXD1 3'UTR 0.38 TCGA-CK-4951-01 2 178098001 178098001 A T NFE2L2 Missense_Mutation p.F127I 0.34 deleterious(0.02) probably_damaging(1) TCGA-CK-4951-01 2 178483287 178483287 A T TTC30A Missense_Mutation p.L48Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 2 178936451 178936451 G A PDE11A Silent p.C238C 0.31 TCGA-CK-4951-01 2 178936667 178936667 G - PDE11A Frame_Shift_Del p.T167Pfs*14 0.27 TCGA-CK-4951-01 2 179392339 179392339 G A TTN Silent p.S35838S 0.28 TCGA-CK-4951-01 2 179426276 179426276 C T TTN Missense_Mutation p.E28195K 0.24 TCGA-CK-4951-01 2 179427705 179427705 G T TTN Missense_Mutation p.D27718E 0.33 TCGA-CK-4951-01 2 179448263 179448263 T - TTN Intron 0.26 TCGA-CK-4951-01 2 179452892 179452892 A G TTN Missense_Mutation p.I21081T 0.33 TCGA-CK-4951-01 2 179467287 179467287 A G TTN Missense_Mutation p.V18281A 0.30 TCGA-CK-4951-01 2 179574464 179574464 A G TTN Missense_Mutation p.Y9528H 0.33 TCGA-CK-4951-01 2 179582305 179582305 G A TTN Silent p.C8432C 0.25 TCGA-CK-4951-01 2 179640262 179640262 T A TTN Missense_Mutation p.E2110V 0.29 TCGA-CK-4951-01 2 180725564 180725564 C T ZNF385B Intron 0.30 TCGA-CK-4951-01 2 180851431 180851431 A G CWC22 Missense_Mutation p.M66T 0.18 tolerated(0.43) benign(0.002) TCGA-CK-4951-01 2 182322379 182322379 C T ITGA4 5'UTR 0.44 TCGA-CK-4951-01 2 183616493 183616493 T C DNAJC10 Missense_Mutation p.L472P 0.35 deleterious(0) probably_damaging(0.989) TCGA-CK-4951-01 2 185463666 185463666 G A ZNF804A 5'UTR 0.36 TCGA-CK-4951-01 2 185798359 185798359 T G ZNF804A Missense_Mutation p.F95L 0.24 deleterious(0) possibly_damaging(0.827) TCGA-CK-4951-01 2 185800900 185800900 T A ZNF804A Silent p.L259L 0.29 TCGA-CK-4951-01 2 186673057 186673057 A G FSIP2 Missense_Mutation p.T6431A 0.60 benign(0.081) TCGA-CK-4951-01 2 188332582 188332582 T C TFPI Missense_Mutation p.N236D 0.29 tolerated(0.12) benign(0.317) TCGA-CK-4951-01 2 190334825 190334825 C T WDR75 Missense_Mutation p.P615S 0.27 deleterious(0.03) possibly_damaging(0.486) TCGA-CK-4951-01 2 190531575 190531575 A C ASNSD1 Missense_Mutation p.K239N 0.21 tolerated(0.4) benign(0.002) TCGA-CK-4951-01 2 190554612 190554612 T C ANKAR Missense_Mutation p.F321L 0.26 tolerated(0.08) possibly_damaging(0.57) TCGA-CK-4951-01 2 190611241 190611241 T A ANKAR Missense_Mutation p.F1398Y 0.30 deleterious_low_confidence(0.05) probably_damaging(0.991) TCGA-CK-4951-01 2 191184526 191184526 T A HIBCH 5'UTR 0.33 TCGA-CK-4951-01 2 191300887 191300887 A G MFSD6 Silent p.T44T 0.11 TCGA-CK-4951-01 2 191379269 191379269 G A TMEM194B Missense_Mutation p.A288V 0.27 deleterious(0.02) benign(0.315) TCGA-CK-4951-01 2 192228935 192228935 G A MYO1B Missense_Mutation p.R322Q 0.33 tolerated(0.35) probably_damaging(0.992) TCGA-CK-4951-01 2 1926644 1926644 G A MYT1L Silent p.Y299Y 0.26 TCGA-CK-4951-01 2 196681554 196681554 C T DNAH7 Missense_Mutation p.E3187K 0.31 tolerated(0.6) benign(0.002) TCGA-CK-4951-01 2 196912196 196912196 T - DNAH7 Frame_Shift_Del p.K93Rfs*47 0.14 TCGA-CK-4951-01 2 197538964 197538964 G T CCDC150 Splice_Site p.X344_splice 0.31 TCGA-CK-4951-01 2 197585355 197585355 C G CCDC150 Missense_Mutation p.A741G 0.33 tolerated(0.08) probably_damaging(0.982) TCGA-CK-4951-01 2 197637646 197637646 T C GTF3C3 Missense_Mutation p.Y688C 0.22 deleterious(0) probably_damaging(0.922) TCGA-CK-4951-01 2 197672248 197672251 AGAG - C2orf66 Frame_Shift_Del p.F92Sfs*30 0.21 TCGA-CK-4951-01 2 197710720 197710720 A T PGAP1 Missense_Mutation p.D724E 0.35 tolerated(0.27) benign(0.003) TCGA-CK-4951-01 2 198263242 198263242 T C SF3B1 Missense_Mutation p.N1026S 0.28 deleterious(0.01) possibly_damaging(0.671) TCGA-CK-4951-01 2 198318273 198318273 G A COQ10B 5'UTR 0.28 TCGA-CK-4951-01 2 198359470 198359470 T C HSPD1 Missense_Mutation p.T173A 0.29 deleterious(0.01) possibly_damaging(0.564) TCGA-CK-4951-01 2 198365034 198365034 A T HSPE1 5'UTR 0.30 TCGA-CK-4951-01 2 201437030 201437030 A C SGOL2 Missense_Mutation p.K654T 0.35 tolerated(0.07) possibly_damaging(0.523) TCGA-CK-4951-01 2 201846378 201846378 A G FAM126B Missense_Mutation p.V403A 0.37 tolerated(0.72) benign(0.014) TCGA-CK-4951-01 2 202251124 202251124 T A TRAK2 Nonsense_Mutation p.K594* 0.30 TCGA-CK-4951-01 2 202252659 202252659 C T TRAK2 Missense_Mutation p.R488H 0.35 deleterious(0) possibly_damaging(0.627) TCGA-CK-4951-01 2 202591558 202591558 A G ALS2 Missense_Mutation p.V1004A 0.39 deleterious(0) probably_damaging(0.936) TCGA-CK-4951-01 2 202592429 202592429 C T ALS2 Missense_Mutation p.V971M 0.26 tolerated(0.13) benign(0.011) TCGA-CK-4951-01 2 202899731 202899731 C T FZD7 Missense_Mutation p.R121C 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 2 202899746 202899746 C T FZD7 Missense_Mutation p.R126C 0.28 deleterious(0) probably_damaging(0.94) TCGA-CK-4951-01 2 202899748 202899748 C T FZD7 Silent p.R126R 0.26 TCGA-CK-4951-01 2 202899809 202899809 C T FZD7 Missense_Mutation p.R147C 0.31 deleterious(0.01) possibly_damaging(0.569) TCGA-CK-4951-01 2 202900638 202900638 G C FZD7 Missense_Mutation p.G423A 0.23 tolerated(0.06) benign(0.395) TCGA-CK-4951-01 2 202902311 202902311 T - FZD7 3'UTR 0.23 TCGA-CK-4951-01 2 203421005 203421005 C T BMPR2 Nonsense_Mutation p.R873* 0.45 TCGA-CK-4951-01 2 203630586 203630586 T A FAM117B 3'UTR 0.31 TCGA-CK-4951-01 2 203680717 203680717 A T ICA1L Missense_Mutation p.F234I 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 20405149 20405149 C T SDC1 Missense_Mutation p.D35N 0.18 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 204154574 204154574 T A CYP20A1 Missense_Mutation p.I353N 0.28 deleterious(0) benign(0.19) TCGA-CK-4951-01 2 20453622 20453622 A G PUM2 Silent p.D1008D 0.33 TCGA-CK-4951-01 2 205410832 205410832 C T PARD3B Missense_Mutation p.T37I 0.18 tolerated(0.25) benign(0.377) TCGA-CK-4951-01 2 20648968 20648968 A T RHOB 3'UTR 0.30 TCGA-CK-4951-01 2 207027012 207027012 A G EEF1B2 Intron 0.42 TCGA-CK-4951-01 2 207834004 207834004 A C CPO Missense_Mutation p.E323D 0.29 deleterious(0.03) possibly_damaging(0.9) TCGA-CK-4951-01 2 208030320 208030320 C T KLF7 5'UTR 0.29 TCGA-CK-4951-01 2 208632018 208632018 G A FZD5 Silent p.L482L 0.32 TCGA-CK-4951-01 2 208633662 208633662 C T FZD5 5'UTR 0.35 TCGA-CK-4951-01 2 20870960 20870960 C T GDF7 Silent p.Y376Y 0.37 TCGA-CK-4951-01 2 209218844 209218844 C T PIKFYVE Nonsense_Mutation p.R2023* 0.28 TCGA-CK-4951-01 2 210834576 210834576 G A UNC80 Silent p.L2631L 0.26 TCGA-CK-4951-01 2 211018375 211018375 T - KANSL1L Frame_Shift_Del p.N311Mfs*63 0.26 TCGA-CK-4951-01 2 21229231 21229231 C T APOB Silent p.S3503S 0.30 TCGA-CK-4951-01 2 21245797 21245797 C T APOB Missense_Mutation p.E908K 0.16 possibly_damaging(0.747) TCGA-CK-4951-01 2 214794780 214794780 C T SPAG16 Silent p.R437R 0.40 TCGA-CK-4951-01 2 215843667 215843667 C T ABCA12 Missense_Mutation p.G1613E 0.24 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 2 216300547 216300547 C T FN1 5'UTR 0.45 TCGA-CK-4951-01 2 217347532 217347532 C T SMARCAL1 Silent p.L899L 0.38 TCGA-CK-4951-01 2 218924673 218924673 G A CXCR2P1 RNA 0.32 TCGA-CK-4951-01 2 218970 218970 C T SH3YL1 Silent p.A290A 0.29 TCGA-CK-4951-01 2 219232658 219232658 G A C2orf62 Missense_Mutation p.E379K 0.09 tolerated_low_confidence(0.34) benign(0.003) TCGA-CK-4951-01 2 219249035 219249035 G A SLC11A1 Missense_Mutation p.D74N 0.26 deleterious(0) probably_damaging(0.962) TCGA-CK-4951-01 2 219305535 219305535 A T VIL1 Missense_Mutation p.N774Y 0.28 tolerated(0.09) benign(0.02) TCGA-CK-4951-01 2 219506857 219506857 G T ZNF142 Missense_Mutation p.T1461N 0.34 deleterious(0.01) benign(0.403) TCGA-CK-4951-01 2 219540805 219540805 C T STK36 Missense_Mutation p.T163I 0.26 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 219602758 219602758 G A TTLL4 Missense_Mutation p.R120H 0.27 tolerated(0.1) benign(0.022) TCGA-CK-4951-01 2 219618311 219618311 C T TTLL4 Missense_Mutation p.S1088F 0.19 deleterious(0) possibly_damaging(0.897) TCGA-CK-4951-01 2 219676971 219676971 G A CYP27A1 Missense_Mutation p.R158H 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 219745790 219745790 C T WNT10A Missense_Mutation p.L25F 0.24 deleterious(0.02) unknown(0) TCGA-CK-4951-01 2 219846728 219846728 G A FEV Silent p.F126F 0.33 TCGA-CK-4951-01 2 219888968 219888968 C T CCDC108 Silent p.V788V 0.23 TCGA-CK-4951-01 2 219920427 219920427 G T IHH Missense_Mutation p.F246L 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-CK-4951-01 2 220039826 220039826 C T CNPPD1 Missense_Mutation p.A89T 0.27 deleterious(0) possibly_damaging(0.907) TCGA-CK-4951-01 2 220088421 220088421 G A ATG9A Silent p.R495R 0.42 TCGA-CK-4951-01 2 220246295 220246295 T A DNPEP Missense_Mutation p.E370V 0.28 deleterious(0) probably_damaging(0.955) TCGA-CK-4951-01 2 220355271 220355271 G A SPEG Missense_Mutation p.R3021Q 0.37 probably_damaging(0.997) TCGA-CK-4951-01 2 220405076 220405076 G A CHPF Nonsense_Mutation p.R453* 0.41 TCGA-CK-4951-01 2 220406571 220406571 C T CHPF Missense_Mutation p.A219T 0.30 tolerated(0.21) benign(0.055) TCGA-CK-4951-01 2 220412355 220412355 C T TMEM198 Silent p.I98I 0.17 TCGA-CK-4951-01 2 220412754 220412754 C T TMEM198 Silent p.G231G 0.37 TCGA-CK-4951-01 2 220416424 220416424 C T OBSL1 Missense_Mutation p.G1837D 0.36 tolerated(0.14) benign(0.35) TCGA-CK-4951-01 2 220422063 220422063 A T OBSL1 Splice_Site p.X1356_splice 0.45 TCGA-CK-4951-01 2 220432573 220432573 C G OBSL1 Missense_Mutation p.E467D 0.33 tolerated(0.79) benign(0.008) TCGA-CK-4951-01 2 220439518 220439518 G A INHA Missense_Mutation p.R124H 0.32 tolerated(0.05) benign(0.051) TCGA-CK-4951-01 2 220440261 220440261 T C INHA 3'UTR 0.33 TCGA-CK-4951-01 2 220466381 220466381 C T STK11IP Missense_Mutation p.P107S 0.27 tolerated(0.4) benign(0.002) TCGA-CK-4951-01 2 220501402 220501402 T G SLC4A3 Missense_Mutation p.F808V 0.34 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 2 220503539 220503539 G A SLC4A3 Missense_Mutation p.V1018I 0.32 tolerated(0.44) benign(0.034) TCGA-CK-4951-01 2 223163401 223163401 G A PAX3 5'UTR 0.29 TCGA-CK-4951-01 2 225729790 225729790 A - DOCK10 Frame_Shift_Del p.F424Lfs*2 0.23 TCGA-CK-4951-01 2 225761012 225761012 C T DOCK10 Missense_Mutation p.R139Q 0.21 tolerated(0.39) benign(0.023) TCGA-CK-4951-01 2 227661231 227661231 T C IRS1 Missense_Mutation p.N742D 0.22 tolerated(0.15) benign(0.202) TCGA-CK-4951-01 2 228228551 228228552 - A TM4SF20 Frame_Shift_Ins p.L193Ffs*31 0.25 TCGA-CK-4951-01 2 232010979 232010979 T A PSMD1 Missense_Mutation p.M675K 0.38 deleterious(0) probably_damaging(0.972) TCGA-CK-4951-01 2 234255697 234255697 C T SAG 3'UTR 0.50 TCGA-CK-4951-01 2 234356958 234356958 G A DGKD Silent p.R517R 0.16 TCGA-CK-4951-01 2 234622332 234622332 C T UGT1A5 Missense_Mutation p.A232V 0.27 tolerated(0.12) benign(0.032) TCGA-CK-4951-01 2 238285729 238285729 G A COL6A3 Missense_Mutation p.A919V 0.31 probably_damaging(1) TCGA-CK-4951-01 2 238455286 238455286 G A MLPH Missense_Mutation p.R526K 0.30 tolerated(0.1) benign(0.017) TCGA-CK-4951-01 2 238727564 238727564 A C RBM44 Missense_Mutation p.K567N 0.37 tolerated(0.38) benign(0.199) TCGA-CK-4951-01 2 238820532 238820532 C T RAMP1 3'UTR 0.40 TCGA-CK-4951-01 2 239054406 239054406 G A KLHL30 Silent p.A361A 0.32 TCGA-CK-4951-01 2 239161810 239161810 G A PER2 Missense_Mutation p.R952W 0.35 deleterious(0.04) possibly_damaging(0.847) TCGA-CK-4951-01 2 23918612 23918612 C T KLHL29 Silent p.N554N 0.36 TCGA-CK-4951-01 2 240985436 240985436 G A OR6B3 Silent p.P18P 0.25 TCGA-CK-4951-01 2 241404128 241404128 G A GPC1 Missense_Mutation p.A327T 0.35 tolerated(0.61) benign(0.021) TCGA-CK-4951-01 2 241439427 241439427 G A ANKMY1 Silent p.V829V 0.36 TCGA-CK-4951-01 2 241708568 241708568 G A KIF1A Silent p.G493G 0.18 TCGA-CK-4951-01 2 241835039 241835039 C A C2orf54 Nonsense_Mutation p.E126* 0.41 TCGA-CK-4951-01 2 242010991 242010991 C - SNED1 Frame_Shift_Del p.R1199Gfs*58 0.43 TCGA-CK-4951-01 2 242080003 242080003 G A PASK Missense_Mutation p.P121L 0.24 tolerated(0.07) possibly_damaging(0.869) TCGA-CK-4951-01 2 242162668 242162668 C T ANO7 Silent p.L851L 0.28 TCGA-CK-4951-01 2 24240451 24240451 C T MFSD2B Missense_Mutation p.P225L 0.21 tolerated(0.08) possibly_damaging(0.509) TCGA-CK-4951-01 2 242439642 242439642 G A STK25 Silent p.L125L 0.21 TCGA-CK-4951-01 2 242683080 242683080 C T D2HGDH Silent p.S178S 0.33 TCGA-CK-4951-01 2 242694976 242694976 G A D2HGDH Intron 0.33 TCGA-CK-4951-01 2 242741220 242741220 G T GAL3ST2 Silent p.G48G 0.23 TCGA-CK-4951-01 2 242741226 242741226 G A GAL3ST2 Silent p.P50P 0.11 TCGA-CK-4951-01 2 242752445 242752445 G A NEU4 5'UTR 0.21 TCGA-CK-4951-01 2 242794896 242794896 C T PDCD1 Missense_Mutation p.D105N 0.23 tolerated(0.28) possibly_damaging(0.614) TCGA-CK-4951-01 2 24395563 24395563 C G FAM228A 5'Flank 0.60 TCGA-CK-4951-01 2 24398354 24398354 C T FAM228A Missense_Mutation p.A2V 0.25 deleterious(0.01) probably_damaging(0.964) TCGA-CK-4951-01 2 24427281 24427281 C T ITSN2 Missense_Mutation p.S1590N 0.26 deleterious(0.02) unknown(0) TCGA-CK-4951-01 2 24522932 24522932 G A ITSN2 Missense_Mutation p.A397V 0.26 deleterious(0.04) unknown(0) TCGA-CK-4951-01 2 25065138 25065138 C T ADCY3 Missense_Mutation p.R314H 0.23 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 2 25463213 25463213 G A DNMT3A Silent p.A760A 0.27 TCGA-CK-4951-01 2 26410220 26410220 C T GAREML Silent p.P573P 0.21 TCGA-CK-4951-01 2 26426986 26426986 G C HADHA Missense_Mutation p.L389V 0.26 deleterious(0.03) probably_damaging(0.955) TCGA-CK-4951-01 2 26512799 26512799 T A HADHB Missense_Mutation p.I468K 0.22 deleterious(0) possibly_damaging(0.846) TCGA-CK-4951-01 2 26536667 26536667 C T GPR113 Missense_Mutation p.A413T 0.26 tolerated(0.6) benign(0.01) TCGA-CK-4951-01 2 26950871 26950871 C T KCNK3 Missense_Mutation p.A207V 0.25 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 2 26951285 26951285 C T KCNK3 Missense_Mutation p.S345L 0.42 tolerated_low_confidence(0.15) benign(0.025) TCGA-CK-4951-01 2 27259997 27259997 T G TMEM214 Missense_Mutation p.F321V 0.29 deleterious(0) benign(0.222) TCGA-CK-4951-01 2 27306189 27306189 G A EMILIN1 Missense_Mutation p.A584T 0.35 benign(0.004) TCGA-CK-4951-01 2 27306198 27306198 G A EMILIN1 Missense_Mutation p.G587R 0.35 benign(0.006) TCGA-CK-4951-01 2 27354943 27354943 C T PREB Missense_Mutation p.G312S 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 27435051 27435051 C T SLC5A6 5'UTR 0.34 TCGA-CK-4951-01 2 27529177 27529177 A T TRIM54 Missense_Mutation p.E363D 0.38 tolerated(0.37) benign(0.007) TCGA-CK-4951-01 2 27587424 27587424 G A EIF2B4 Missense_Mutation p.A492V 0.38 tolerated(0.59) benign(0.001) TCGA-CK-4951-01 2 27665302 27665302 C T KRTCAP3 Missense_Mutation p.A8V 0.28 tolerated(0.31) benign(0) TCGA-CK-4951-01 2 27665306 27665306 C T KRTCAP3 Silent p.F9F 0.27 TCGA-CK-4951-01 2 27851946 27851946 C T GPN1 Silent p.A21A 0.31 TCGA-CK-4951-01 2 27908026 27908027 - A SLC4A1AP Frame_Shift_Ins p.L669Tfs*8 0.25 TCGA-CK-4951-01 2 28032782 28032782 T - RBKS Intron 0.24 TCGA-CK-4951-01 2 28826833 28826833 C T PLB1 Silent p.S925S 0.33 TCGA-CK-4951-01 2 29258369 29258369 C T FAM179A Silent p.S755S 0.39 TCGA-CK-4951-01 2 31806025 31806025 G A SRD5A2 RNA 0.33 TCGA-CK-4951-01 2 32476395 32476395 G A NLRC4 Nonsense_Mutation p.Q180* 0.31 TCGA-CK-4951-01 2 32701336 32701336 A - BIRC6 Frame_Shift_Del p.I2261Yfs*13 0.23 TCGA-CK-4951-01 2 3392211 3392211 C - TRAPPC12 Frame_Shift_Del p.P274Rfs*25 0.35 TCGA-CK-4951-01 2 3425757 3425757 T A TRAPPC12 Missense_Mutation p.S424T 0.23 tolerated(0.13) benign(0.052) TCGA-CK-4951-01 2 3599850 3599850 C T RNASEH1 Missense_Mutation p.R98Q 0.26 tolerated(0.12) probably_damaging(0.966) TCGA-CK-4951-01 2 36805749 36805749 C T FEZ2 Missense_Mutation p.M298I 0.26 tolerated(0.12) benign(0.059) TCGA-CK-4951-01 2 37035886 37035886 A G VIT Missense_Mutation p.Y554C 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 2 37076480 37076480 C T STRN 3'UTR 0.28 TCGA-CK-4951-01 2 37306333 37306334 - A HEATR5B Frame_Shift_Ins p.Q90Sfs*4 0.22 TCGA-CK-4951-01 2 37364144 37364144 T A EIF2AK2 Missense_Mutation p.N235I 0.36 deleterious(0.02) possibly_damaging(0.512) TCGA-CK-4951-01 2 3744966 3744966 C T ALLC Missense_Mutation p.P257L 0.40 tolerated(0.07) possibly_damaging(0.532) TCGA-CK-4951-01 2 37505089 37505089 A T PRKD3 Missense_Mutation p.S406T 0.39 tolerated(0.08) possibly_damaging(0.53) TCGA-CK-4951-01 2 37520326 37520326 G A PRKD3 Missense_Mutation p.T126I 0.35 tolerated(0.09) benign(0.021) TCGA-CK-4951-01 2 38244611 38244611 G A RMDN2 Intron 0.35 TCGA-CK-4951-01 2 38796963 38796963 C T HNRNPLL Silent p.G394G 0.32 TCGA-CK-4951-01 2 39030021 39030021 C T DHX57 Missense_Mutation p.E1285K 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 39477828 39477828 A G MAP4K3 Silent p.S872S 0.29 TCGA-CK-4951-01 2 40657127 40657127 C T SLC8A1 Silent p.R98R 0.27 TCGA-CK-4951-01 2 42522658 42522658 T C EML4 Splice_Site p.X497_splice 0.25 TCGA-CK-4951-01 2 42720324 42720324 C T KCNG3 Silent p.A106A 0.33 TCGA-CK-4951-01 2 43947859 43947859 T C PLEKHH2 Silent p.L838L 0.37 TCGA-CK-4951-01 2 45235912 45235912 C T SIX2 Missense_Mutation p.R113H 0.32 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 2 46574181 46574181 A G EPAS1 Missense_Mutation p.T66A 0.14 deleterious(0.03) benign(0.403) TCGA-CK-4951-01 2 47314207 47314207 T A C2orf61 Silent p.I229I 0.27 TCGA-CK-4951-01 2 48025819 48025819 C T MSH6 Missense_Mutation p.P233S 0.33 tolerated(0.23) probably_damaging(0.998) TCGA-CK-4951-01 2 48027273 48027273 C T MSH6 Silent p.V717V 0.16 TCGA-CK-4951-01 2 48030572 48030572 C T MSH6 Silent p.C1062C 0.31 TCGA-CK-4951-01 2 48573633 48573633 C T FOXN2 Missense_Mutation p.P94S 0.33 tolerated(0.31) benign(0.007) TCGA-CK-4951-01 2 51149818 51149818 C T NRXN1 Silent p.A299A 0.20 TCGA-CK-4951-01 2 54163916 54163916 G A PSME4 Silent p.L248L 0.26 TCGA-CK-4951-01 2 54482829 54482829 C T TSPYL6 Missense_Mutation p.E154K 0.21 tolerated(1) benign(0.003) TCGA-CK-4951-01 2 54482925 54482925 C T TSPYL6 Missense_Mutation p.G122S 0.12 tolerated(0.32) possibly_damaging(0.494) TCGA-CK-4951-01 2 54856903 54856903 C T SPTBN1 Missense_Mutation p.P878S 0.21 tolerated(0.13) probably_damaging(0.99) TCGA-CK-4951-01 2 54876874 54876874 C A SPTBN1 Silent p.T1775T 0.34 TCGA-CK-4951-01 2 5832848 5832848 C T SOX11 5'UTR 0.25 TCGA-CK-4951-01 2 5835147 5835147 G A SOX11 3'UTR 0.22 TCGA-CK-4951-01 2 5839017 5839017 A C SOX11 3'UTR 0.08 TCGA-CK-4951-01 2 5841495 5841495 T C SOX11 3'UTR 0.14 TCGA-CK-4951-01 2 61021135 61021135 C - PAPOLG Frame_Shift_Del p.T602Lfs*8 0.34 TCGA-CK-4951-01 2 61441773 61441773 G A USP34 Missense_Mutation p.R2702W 0.38 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 2 62066655 62066655 C T FAM161A Missense_Mutation p.R495H 0.34 tolerated(1) benign(0.001) TCGA-CK-4951-01 2 62728304 62728304 T C TMEM17 3'UTR 0.09 TCGA-CK-4951-01 2 63272405 63272405 G A EHBP1 Intron 0.35 TCGA-CK-4951-01 2 63280169 63280169 T A OTX1 Missense_Mutation p.L15Q 0.39 deleterious(0) probably_damaging(0.989) TCGA-CK-4951-01 2 63282820 63282820 C T OTX1 Missense_Mutation p.S145F 0.37 deleterious(0.03) unknown(0) TCGA-CK-4951-01 2 64111152 64111152 C T UGP2 Missense_Mutation p.T167M 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 2 64113551 64113551 A T UGP2 Missense_Mutation p.E317V 0.25 deleterious(0) probably_damaging(0.911) TCGA-CK-4951-01 2 64779205 64779205 T C AFTPH Silent p.D199D 0.33 TCGA-CK-4951-01 2 64863862 64863862 G C SERTAD2 Silent p.L48L 0.22 TCGA-CK-4951-01 2 65243670 65243670 C T SLC1A4 Silent p.F299F 0.36 TCGA-CK-4951-01 2 65540716 65540716 G A SPRED2 Silent p.C392C 0.24 TCGA-CK-4951-01 2 68364537 68364537 T C WDR92 Missense_Mutation p.D221G 0.36 deleterious(0) possibly_damaging(0.724) TCGA-CK-4951-01 2 69409717 69409717 A T ANTXR1 Missense_Mutation p.E426D 0.30 tolerated(0.07) benign(0.107) TCGA-CK-4951-01 2 69769768 69769768 G A AAK1 Missense_Mutation p.R141C 0.32 deleterious(0.01) unknown(0) TCGA-CK-4951-01 2 70502655 70502655 C T PCYOX1 Missense_Mutation p.S239L 0.33 deleterious(0.02) probably_damaging(1) TCGA-CK-4951-01 2 70515234 70515234 G A SNRPG Missense_Mutation p.A49V 0.24 tolerated(0.28) benign(0.003) TCGA-CK-4951-01 2 70900414 70900414 C T ADD2 Intron 0.17 TCGA-CK-4951-01 2 71212141 71212141 G A ANKRD53 Missense_Mutation p.R435Q 0.23 tolerated(0.34) benign(0.002) TCGA-CK-4951-01 2 71681025 71681025 C T DYSF 5'UTR 0.33 TCGA-CK-4951-01 2 71783199 71783199 C T DYSF Silent p.C738C 0.20 TCGA-CK-4951-01 2 71795105 71795105 G A DYSF Missense_Mutation p.A864T 0.29 tolerated(0.71) benign(0.001) TCGA-CK-4951-01 2 71825787 71825787 T C DYSF Missense_Mutation p.F1223S 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 2 73455590 73455590 A T PRADC1 Missense_Mutation p.F187I 0.07 tolerated(0.39) benign(0.084) TCGA-CK-4951-01 2 73492746 73492746 C T FBXO41 Missense_Mutation p.A410T 0.32 tolerated(0.44) benign(0.063) TCGA-CK-4951-01 2 74512948 74512948 T A SLC4A5 Missense_Mutation p.D118V 0.54 deleterious(0) possibly_damaging(0.764) TCGA-CK-4951-01 2 74596477 74596477 C T DCTN1 Missense_Mutation p.D512N 0.17 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 2 74641989 74641989 G A C2orf81 Missense_Mutation p.P412S 0.24 tolerated(0.14) benign(0.131) TCGA-CK-4951-01 2 74702750 74702750 C T CCDC142 Missense_Mutation p.R529H 0.15 tolerated(0.17) benign(0.002) TCGA-CK-4951-01 2 74732191 74732191 T C PCGF1 3'UTR 0.24 TCGA-CK-4951-01 2 74751399 74751399 G A DQX1 Missense_Mutation p.A156V 0.27 deleterious(0.01) benign(0.156) TCGA-CK-4951-01 2 74784101 74784101 G A DOK1 Missense_Mutation p.A436T 0.38 tolerated(0.66) benign(0.001) TCGA-CK-4951-01 2 75720462 75720462 C T EVA1A Missense_Mutation p.R120H 0.43 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 2 84921397 84921397 A G DNAH6 Silent p.E2439E 0.09 TCGA-CK-4951-01 2 85023537 85023537 T C DNAH6 Missense_Mutation p.Y3783H 0.07 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 2 85280319 85280319 C T KCMF1 Silent p.S311S 0.33 TCGA-CK-4951-01 2 85553844 85553844 T A TGOLN2 Silent p.S337S 0.24 TCGA-CK-4951-01 2 85769212 85769212 A T MAT2A Intron 0.30 TCGA-CK-4951-01 2 85778602 85778602 C T GGCX Splice_Site p.X580_splice 0.40 TCGA-CK-4951-01 2 85836008 85836008 C A C2orf68 3'UTR 0.44 TCGA-CK-4951-01 2 87201334 87201334 T A RGPD1 Missense_Mutation p.L463H 0.12 deleterious(0) possibly_damaging(0.777) TCGA-CK-4951-01 2 88082751 88082751 C T RGPD2 Silent p.P1264P 0.28 TCGA-CK-4951-01 2 89265877 89265877 G A IGKV1-6 Silent p.S85S 0.31 TCGA-CK-4951-01 2 89326826 89326826 C T IGKV3-11 Missense_Mutation p.A63T 0.31 deleterious(0.02) possibly_damaging(0.565) TCGA-CK-4951-01 2 89326831 89326831 C T IGKV3-11 Missense_Mutation p.G61D 0.31 deleterious(0.02) probably_damaging(0.914) TCGA-CK-4951-01 2 89442276 89442276 G A IGKV3-20 Silent p.C43C 0.29 TCGA-CK-4951-01 2 90249223 90249223 A G IGKV1D-43 Missense_Mutation p.Q60R 0.26 deleterious(0) possibly_damaging(0.541) TCGA-CK-4951-01 2 96861114 96861114 C T STARD7 Missense_Mutation p.R155H 0.27 deleterious(0.04) benign(0.299) TCGA-CK-4951-01 2 96873964 96873964 C T STARD7 Missense_Mutation p.G70D 0.30 tolerated(0.53) benign(0.05) TCGA-CK-4951-01 2 96955068 96955068 G A SNRNP200 Missense_Mutation p.T997I 0.41 deleterious(0) probably_damaging(0.948) TCGA-CK-4951-01 2 96955680 96955680 G A SNRNP200 Missense_Mutation p.P933S 0.29 deleterious(0) benign(0.323) TCGA-CK-4951-01 2 96957201 96957201 T A SNRNP200 Missense_Mutation p.I784F 0.36 deleterious(0) probably_damaging(0.978) TCGA-CK-4951-01 2 97779433 97779433 C T ANKRD36 5'UTR 0.47 TCGA-CK-4951-01 2 98274445 98274445 C T ACTR1B Missense_Mutation p.A296T 0.34 tolerated(0.16) benign(0.001) TCGA-CK-4951-01 2 98349358 98349358 G A ZAP70 Silent p.R192R 0.42 TCGA-CK-4951-01 2 98430787 98430787 C T TMEM131 Missense_Mutation p.E453K 0.24 tolerated(0.31) benign(0.197) TCGA-CK-4951-01 2 98928341 98928341 C T VWA3B Missense_Mutation p.T1194M 0.30 deleterious_low_confidence(0.04) benign(0.023) TCGA-CK-4951-01 2 99413948 99413948 C T KIAA1211L Silent p.A823A 0.35 TCGA-CK-4951-01 2 99454736 99454736 T C KIAA1211L Missense_Mutation p.K29E 0.31 deleterious(0) possibly_damaging(0.486) TCGA-CK-4951-01 2 99697840 99697840 T C TSGA10 Missense_Mutation p.E211G 0.28 deleterious(0) possibly_damaging(0.629) TCGA-CK-4951-01 3 10107105 10107105 G T FANCD2 Silent p.P732P 0.26 TCGA-CK-4951-01 3 101476906 101476906 G A CEP97 Missense_Mutation p.E486K 0.38 tolerated(0.27) benign(0.005) TCGA-CK-4951-01 3 101504423 101504423 A T NXPE3 5'UTR 0.31 TCGA-CK-4951-01 3 10157332 10157332 A G BRK1 5'UTR 0.30 TCGA-CK-4951-01 3 101573928 101573928 C T NFKBIZ Missense_Mutation p.A489V 0.42 deleterious(0.05) benign(0.444) TCGA-CK-4951-01 3 10354280 10354280 G A SEC13 Missense_Mutation p.A100V 0.23 tolerated(0.05) benign(0.007) TCGA-CK-4951-01 3 10354299 10354299 C T SEC13 Missense_Mutation p.E94K 0.39 tolerated(0.18) benign(0.001) TCGA-CK-4951-01 3 10357064 10357064 C T SEC13 Silent p.R35R 0.22 TCGA-CK-4951-01 3 10401606 10401606 G T ATP2B2 Missense_Mutation p.R621S 0.45 deleterious(0) possibly_damaging(0.674) TCGA-CK-4951-01 3 10442736 10442736 A G ATP2B2 Missense_Mutation p.F228L 0.27 tolerated(1) benign(0.003) TCGA-CK-4951-01 3 107938389 107938389 G A IFT57 Silent p.G81G 0.34 TCGA-CK-4951-01 3 108672562 108672562 T C GUCA1C Silent p.T16T 0.34 TCGA-CK-4951-01 3 108705750 108705750 T - MORC1 Frame_Shift_Del p.K745Rfs*6 0.22 TCGA-CK-4951-01 3 112267473 112267473 G A ATG3 Missense_Mutation p.R84W 0.32 tolerated(0.05) benign(0.24) TCGA-CK-4951-01 3 113119418 113119418 T A WDR52 Missense_Mutation p.Y483F 0.41 deleterious(0.02) possibly_damaging(0.733) TCGA-CK-4951-01 3 113119474 113119474 G A WDR52 Silent p.C464C 0.39 TCGA-CK-4951-01 3 113166940 113166940 G A SPICE1 Missense_Mutation p.P791S 0.21 tolerated(0.15) benign(0.065) TCGA-CK-4951-01 3 113184568 113184568 G A SPICE1 Missense_Mutation p.H407Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 3 113302303 113302303 G A SIDT1 Silent p.K265K 0.10 TCGA-CK-4951-01 3 113376300 113376300 G A KIAA2018 Missense_Mutation p.T1410I 0.31 benign(0.018) TCGA-CK-4951-01 3 113724723 113724725 TGT - KIAA1407 In_Frame_Del p.T500del 0.27 TCGA-CK-4951-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.22 TCGA-CK-4951-01 3 115571401 115571401 C T LSAMP Missense_Mutation p.G193D 0.22 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 3 119209472 119209472 T C POGLUT1 Missense_Mutation p.F291S 0.38 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 3 119367391 119367391 G A POPDC2 Missense_Mutation p.S242L 0.16 deleterious(0) probably_damaging(0.946) TCGA-CK-4951-01 3 119422032 119422032 C T MAATS1 Silent p.S29S 0.18 TCGA-CK-4951-01 3 119451294 119451295 - A MAATS1 Frame_Shift_Ins p.N393Kfs*8 0.25 TCGA-CK-4951-01 3 121207489 121207489 A - POLQ Frame_Shift_Del p.L1430* 0.20 TCGA-CK-4951-01 3 121209110 121209110 C T POLQ Missense_Mutation p.D890N 0.35 deleterious(0) probably_damaging(0.979) TCGA-CK-4951-01 3 122087026 122087029 TGTC - CCDC58 Frame_Shift_Del p.T107Sfs*2 0.34 TCGA-CK-4951-01 3 122259328 122259328 G A PARP9 Missense_Mutation p.R621C 0.32 tolerated(0.17) benign(0.004) TCGA-CK-4951-01 3 122345833 122345833 A G PARP15 Missense_Mutation p.D464G 0.36 tolerated(0.06) benign(0.039) TCGA-CK-4951-01 3 122634421 122634421 C T SEMA5B Nonsense_Mutation p.W672* 0.32 TCGA-CK-4951-01 3 123019008 123019008 C T ADCY5 Silent p.T953T 0.30 TCGA-CK-4951-01 3 123471310 123471310 G T MYLK Missense_Mutation p.L81M 0.22 tolerated(0.42) possibly_damaging(0.788) TCGA-CK-4951-01 3 124515446 124515446 C T ITGB5 Silent p.L494L 0.13 TCGA-CK-4951-01 3 125647370 125647370 C T ALG1L 3'Flank 0.18 TCGA-CK-4951-01 3 125822549 125822549 G A ALDH1L1 3'UTR 0.45 TCGA-CK-4951-01 3 126062510 126062510 A - KLF15 3'UTR 0.26 TCGA-CK-4951-01 3 126070875 126070875 C T KLF15 Silent p.G297G 0.33 TCGA-CK-4951-01 3 126155228 126155228 T C CCDC37 Missense_Mutation p.L606P 0.27 tolerated(0.2) benign(0.445) TCGA-CK-4951-01 3 126710359 126710359 C T PLXNA1 Missense_Mutation p.R443W 0.33 deleterious(0.02) possibly_damaging(0.713) TCGA-CK-4951-01 3 127292440 127292440 T C TPRA1 Missense_Mutation p.D349G 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-CK-4951-01 3 127294606 127294606 C T TPRA1 Missense_Mutation p.R219H 0.28 deleterious(0.01) benign(0.035) TCGA-CK-4951-01 3 127358090 127358090 G A PODXL2 Missense_Mutation p.A25T 0.27 tolerated(0.17) unknown(0) TCGA-CK-4951-01 3 128060501 128060501 C T EEFSEC Silent p.G404G 0.33 TCGA-CK-4951-01 3 128182050 128182050 G A DNAJB8 Silent p.S13S 0.40 TCGA-CK-4951-01 3 128200744 128200744 G A GATA2 Missense_Mutation p.T354M 0.40 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 3 128345585 128345585 T A RPN1 Missense_Mutation p.E376V 0.43 deleterious(0) probably_damaging(0.967) TCGA-CK-4951-01 3 128348824 128348824 G C RPN1 Missense_Mutation p.L336V 0.34 tolerated(1) benign(0.23) TCGA-CK-4951-01 3 128363787 128363787 G A RPN1 Missense_Mutation p.R101C 0.32 deleterious(0.04) possibly_damaging(0.806) TCGA-CK-4951-01 3 12856797 12856797 C T CAND2 Silent p.R388R 0.35 TCGA-CK-4951-01 3 128690074 128690074 C T KIAA1257 Silent p.R408R 0.48 TCGA-CK-4951-01 3 128976468 128976468 C T COPG1 Silent p.G245G 0.25 TCGA-CK-4951-01 3 128984410 128984410 C T COPG1 Missense_Mutation p.R415C 0.39 deleterious(0) probably_damaging(0.953) TCGA-CK-4951-01 3 129134087 129134087 C T EFCAB12 Splice_Site p.X280_splice 0.34 TCGA-CK-4951-01 3 129266501 129266501 G - H1FOO Frame_Shift_Del p.A121Pfs*7 0.40 TCGA-CK-4951-01 3 129279254 129279254 C T PLXND1 Silent p.A1684A 0.11 TCGA-CK-4951-01 3 129303327 129303327 G A PLXND1 Missense_Mutation p.R644C 0.32 tolerated(0.19) benign(0.276) TCGA-CK-4951-01 3 12949911 12949911 G A IQSEC1 Missense_Mutation p.A912V 0.41 tolerated(0.06) benign(0.235) TCGA-CK-4951-01 3 12949919 12949919 G A IQSEC1 Silent p.D909D 0.37 TCGA-CK-4951-01 3 129547260 129547260 T A TMCC1 5'UTR 0.18 TCGA-CK-4951-01 3 130098280 130098280 T A COL6A5 Nonsense_Mutation p.C229* 0.18 TCGA-CK-4951-01 3 130715609 130715609 A G ATP2C1 Missense_Mutation p.N772D 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 3 131624232 131624232 T A CPNE4 Missense_Mutation p.N19I 0.27 tolerated(0.12) benign(0.063) TCGA-CK-4951-01 3 132395426 132395426 A - UBA5 3'UTR 0.29 TCGA-CK-4951-01 3 133465219 133465219 C T TF 5'UTR 0.35 TCGA-CK-4951-01 3 133614383 133614383 C T RAB6B 5'UTR 0.33 TCGA-CK-4951-01 3 13399896 13399896 C T NUP210 Splice_Site p.X719_splice 0.28 TCGA-CK-4951-01 3 136676978 136676978 T C IL20RB Missense_Mutation p.L8P 0.18 tolerated_low_confidence(0.06) benign(0.003) TCGA-CK-4951-01 3 13670429 13670429 C T FBLN2 Missense_Mutation p.S865F 0.40 tolerated(0.12) possibly_damaging(0.459) TCGA-CK-4951-01 3 137729028 137729028 C T CLDN18 5'UTR 0.40 TCGA-CK-4951-01 3 137742517 137742517 C T CLDN18 Nonsense_Mutation p.R80* 0.27 TCGA-CK-4951-01 3 137963969 137963969 G A ARMC8 Missense_Mutation p.A346T 0.40 deleterious(0) probably_damaging(0.928) TCGA-CK-4951-01 3 138665419 138665419 G A FOXL2 Missense_Mutation p.P49L 0.46 tolerated(0.07) unknown(0) TCGA-CK-4951-01 3 138762986 138762986 C T PRR23C Silent p.A159A 0.30 TCGA-CK-4951-01 3 138763300 138763300 C T PRR23C Missense_Mutation p.D55N 0.26 tolerated(0.25) benign(0.423) TCGA-CK-4951-01 3 141162242 141162242 C T ZBTB38 Missense_Mutation p.P338S 0.25 tolerated(0.24) possibly_damaging(0.551) TCGA-CK-4951-01 3 14183281 14183281 A - TMEM43 Frame_Shift_Del p.K398Sfs*17 0.35 TCGA-CK-4951-01 3 142075866 142075866 G A XRN1 Missense_Mutation p.A1187V 0.34 tolerated(0.14) probably_damaging(0.999) TCGA-CK-4951-01 3 142122556 142122556 A T XRN1 Missense_Mutation p.M688K 0.43 deleterious(0) benign(0.418) TCGA-CK-4951-01 3 14239580 14239580 C T LSM3 Silent p.G91G 0.33 TCGA-CK-4951-01 3 142467254 142467254 G A TRPC1 Missense_Mutation p.C195Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 3 142539866 142539866 G A PCOLCE2 Missense_Mutation p.T324I 0.35 deleterious(0) possibly_damaging(0.493) TCGA-CK-4951-01 3 142840928 142840928 C T CHST2 Missense_Mutation p.R424W 0.32 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 3 14489094 14489094 C T SLC6A6 Silent p.I123I 0.25 TCGA-CK-4951-01 3 14513769 14513769 A G SLC6A6 Missense_Mutation p.T385A 0.34 deleterious(0.03) possibly_damaging(0.644) TCGA-CK-4951-01 3 146311898 146311898 A T PLSCR5 Missense_Mutation p.Y88N 0.32 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 3 147113651 147113651 G A ZIC4 Nonsense_Mutation p.R276* 0.12 TCGA-CK-4951-01 3 150384630 150384630 T C FAM194A Missense_Mutation p.I558V 0.29 tolerated(0.3) benign(0.054) TCGA-CK-4951-01 3 150911402 150911402 T A MED12L Missense_Mutation p.N698K 0.22 tolerated(0.94) benign(0.061) TCGA-CK-4951-01 3 151166375 151166375 A G IGSF10 Missense_Mutation p.M465T 0.35 tolerated(0.56) benign(0.003) TCGA-CK-4951-01 3 151174942 151174942 A T IGSF10 Missense_Mutation p.Y66N 0.35 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 3 15124056 15124056 G A ZFYVE20 Missense_Mutation p.P220S 0.12 tolerated(0.12) probably_damaging(0.959) TCGA-CK-4951-01 3 152881296 152881296 T A RAP2B 3'UTR 0.35 TCGA-CK-4951-01 3 155199458 155199458 G - PLCH1 Frame_Shift_Del p.Q1461Sfs*24 0.26 TCGA-CK-4951-01 3 15683502 15683502 C T BTD Missense_Mutation p.P133S 0.26 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 3 159976310 159976310 C T IFT80 3'UTR 0.35 TCGA-CK-4951-01 3 160037564 160037564 T C IFT80 Missense_Mutation p.K314R 0.23 tolerated(0.23) benign(0.156) TCGA-CK-4951-01 3 160219844 160219844 A G KPNA4 3'UTR 0.24 TCGA-CK-4951-01 3 160945112 160945112 T A NMD3 Missense_Mutation p.I86N 0.27 deleterious(0) possibly_damaging(0.847) TCGA-CK-4951-01 3 16306404 16306404 G - DPH3 5'UTR 0.30 TCGA-CK-4951-01 3 169557805 169557805 T - LRRC31 Frame_Shift_Del p.R542Efs*37 0.22 TCGA-CK-4951-01 3 169854249 169854249 C T PHC3 Missense_Mutation p.A293T 0.29 tolerated(0.38) benign(0.384) TCGA-CK-4951-01 3 170013699 170013699 T C PRKCI Missense_Mutation p.V473A 0.39 tolerated(0.2) probably_damaging(0.996) TCGA-CK-4951-01 3 172165610 172165610 G T GHSR Nonsense_Mutation p.C198* 0.31 TCGA-CK-4951-01 3 172533483 172533483 A - ECT2 Frame_Shift_Del p.K832Rfs*25 0.09 TCGA-CK-4951-01 3 17447989 17447989 T C TBC1D5 Missense_Mutation p.N66S 0.26 tolerated(0.72) benign(0.013) TCGA-CK-4951-01 3 178916814 178916814 T C PIK3CA Silent p.S67S 0.33 TCGA-CK-4951-01 3 178952018 178952018 A G PIK3CA Missense_Mutation p.T1025A 0.31 deleterious(0.01) probably_damaging(0.931) TCGA-CK-4951-01 3 179119004 179119004 A T GNB4 Missense_Mutation p.N340K 0.34 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 3 179304403 179304403 T A ACTL6A Missense_Mutation p.S398T 0.37 deleterious(0) probably_damaging(0.943) TCGA-CK-4951-01 3 179304410 179304410 T C ACTL6A Missense_Mutation p.L400P 0.36 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 3 179304421 179304421 G A ACTL6A Splice_Site p.X403_splice 0.29 TCGA-CK-4951-01 3 179371160 179371160 C T USP13 Silent p.C49C 0.30 TCGA-CK-4951-01 3 180332568 180332568 T - CCDC39 3'UTR 0.37 TCGA-CK-4951-01 3 180666565 180666565 T - FXR1 Frame_Shift_Del p.Y161Tfs*8 0.24 TCGA-CK-4951-01 3 181430838 181430838 G A SOX2 Silent p.Q230Q 0.31 TCGA-CK-4951-01 3 182575688 182575688 A T ATP11B Missense_Mutation p.I292F 0.09 tolerated(0.19) benign(0.033) TCGA-CK-4951-01 3 183390102 183390102 G A KLHL24 Missense_Mutation p.E478K 0.15 tolerated(0.85) benign(0.038) TCGA-CK-4951-01 3 183390202 183390202 C T KLHL24 Missense_Mutation p.T511I 0.28 tolerated(0.06) possibly_damaging(0.688) TCGA-CK-4951-01 3 183639015 183639015 C T ABCC5 3'UTR 0.16 TCGA-CK-4951-01 3 183955123 183955123 C T VWA5B2 Missense_Mutation p.A548V 0.29 tolerated(0.15) benign(0.011) TCGA-CK-4951-01 3 183956519 183956519 C A VWA5B2 Missense_Mutation p.P687Q 0.27 deleterious(0.01) possibly_damaging(0.646) TCGA-CK-4951-01 3 183963114 183963114 G A ALG3 Silent p.C159C 0.29 TCGA-CK-4951-01 3 184008629 184008629 G A ECE2 Silent p.T723T 0.24 TCGA-CK-4951-01 3 184039155 184039155 G A EIF4G1 Silent p.S268S 0.27 TCGA-CK-4951-01 3 185146331 185146331 T C MAP3K13 5'UTR 0.43 TCGA-CK-4951-01 3 185376141 185376141 C T IGF2BP2 Silent p.P419P 0.42 TCGA-CK-4951-01 3 185635392 185635392 A T TRA2B 3'UTR 0.31 TCGA-CK-4951-01 3 185978273 185978273 T C DGKG Missense_Mutation p.N460S 0.16 tolerated(0.07) possibly_damaging(0.816) TCGA-CK-4951-01 3 187440284 187440284 C T BCL6 Missense_Mutation p.A695T 0.19 tolerated(1) benign(0.004) TCGA-CK-4951-01 3 189838156 189838156 C T LEPREL1 Missense_Mutation p.S122N 0.41 tolerated(0.44) benign(0.001) TCGA-CK-4951-01 3 190322158 190322158 G C IL1RAP Silent p.R102R 0.32 TCGA-CK-4951-01 3 192125883 192125883 G C FGF12 Missense_Mutation p.H44D 0.38 deleterious(0.02) benign(0.028) TCGA-CK-4951-01 3 194062648 194062648 C T CPN2 Missense_Mutation p.A262T 0.24 tolerated(0.25) benign(0.072) TCGA-CK-4951-01 3 194408158 194408158 C T FAM43A Silent p.R201R 0.22 TCGA-CK-4951-01 3 195298205 195298205 C G APOD Missense_Mutation p.E93Q 0.26 tolerated(0.29) benign(0.158) TCGA-CK-4951-01 3 195505974 195505974 G A MUC4 Silent p.T4159T 0.29 TCGA-CK-4951-01 3 195505982 195505982 G A MUC4 Missense_Mutation p.H4157Y 0.28 unknown(0) TCGA-CK-4951-01 3 195506006 195506006 T A MUC4 Missense_Mutation p.I4149F 0.21 unknown(0) TCGA-CK-4951-01 3 195506210 195506210 G A MUC4 Missense_Mutation p.L4081F 0.30 benign(0.104) TCGA-CK-4951-01 3 195506727 195506727 G A MUC4 Silent p.T3908T 0.43 TCGA-CK-4951-01 3 195512490 195512490 G A MUC4 Silent p.V1987V 0.30 TCGA-CK-4951-01 3 19554751 19554751 A T KCNH8 Missense_Mutation p.K790I 0.35 tolerated(0.1) benign(0.001) TCGA-CK-4951-01 3 195594642 195594642 C T TNK2 Missense_Mutation p.A906T 0.23 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-CK-4951-01 3 195599269 195599269 C T TNK2 Silent p.V506V 0.23 TCGA-CK-4951-01 3 195615403 195615403 C T TNK2 Silent p.L82L 0.15 TCGA-CK-4951-01 3 195698198 195698198 T C SDHAP1 RNA 0.11 TCGA-CK-4951-01 3 195798926 195798926 G A TFRC Missense_Mutation p.L178F 0.28 tolerated(0.06) benign(0.241) TCGA-CK-4951-01 3 196094910 196094911 - T UBXN7 Frame_Shift_Ins p.C275Mfs*12 0.35 TCGA-CK-4951-01 3 196533536 196533536 G A PAK2 Silent p.P185P 0.24 TCGA-CK-4951-01 3 196612351 196612351 A G SENP5 Missense_Mutation p.D100G 0.19 tolerated_low_confidence(0.23) benign(0) TCGA-CK-4951-01 3 196730926 196730926 G C MFI2 Missense_Mutation p.F661L 0.25 deleterious(0) probably_damaging(0.973) TCGA-CK-4951-01 3 197401909 197401909 C T KIAA0226 Missense_Mutation p.A967T 0.19 tolerated_low_confidence(1) unknown(0) TCGA-CK-4951-01 3 197804071 197804071 T G ANKRD18DP RNA 0.24 TCGA-CK-4951-01 3 20212131 20212131 C A SGOL1 Intron 0.20 TCGA-CK-4951-01 3 20216337 20216337 A - SGOL1 Frame_Shift_Del p.L229* 0.24 TCGA-CK-4951-01 3 22424071 22424071 G T HMGB1P5 RNA 0.19 TCGA-CK-4951-01 3 24003769 24003769 A T NR1D2 Missense_Mutation p.E273D 0.28 tolerated(0.5) benign(0.251) TCGA-CK-4951-01 3 25542773 25542773 G A RARB Missense_Mutation p.C136Y 0.21 deleterious(0) possibly_damaging(0.77) TCGA-CK-4951-01 3 25668727 25668727 C T TOP2B Missense_Mutation p.R651H 0.25 deleterious(0) probably_damaging(0.931) TCGA-CK-4951-01 3 26751377 26751377 G A LRRC3B Missense_Mutation p.D72N 0.35 deleterious(0.03) probably_damaging(1) TCGA-CK-4951-01 3 30769714 30769714 C T GADL1 3'UTR 0.40 TCGA-CK-4951-01 3 31574499 31574499 G A STT3B Silent p.E3E 0.47 TCGA-CK-4951-01 3 31574804 31574804 G A STT3B Nonsense_Mutation p.W105* 0.64 TCGA-CK-4951-01 3 32568194 32568194 G A DYNC1LI1 3'UTR 0.40 TCGA-CK-4951-01 3 32570035 32570035 C G DYNC1LI1 Missense_Mutation p.K455N 0.35 deleterious(0.02) benign(0.12) TCGA-CK-4951-01 3 32611869 32611869 C T DYNC1LI1 Silent p.K63K 0.25 TCGA-CK-4951-01 3 32933269 32933269 T C TRIM71 Missense_Mutation p.V858A 0.17 deleterious(0) probably_damaging(0.954) TCGA-CK-4951-01 3 32995768 32995768 C A CCR4 Missense_Mutation p.A285D 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-CK-4951-01 3 33400483 33400483 A T FBXL2 Silent p.V30V 0.35 TCGA-CK-4951-01 3 37459733 37459733 C G C3orf35 Intron 0.24 TCGA-CK-4951-01 3 37493968 37493968 C T ITGA9 Nonsense_Mutation p.Q35* 0.19 TCGA-CK-4951-01 3 37860646 37860646 C T ITGA9 3'UTR 0.25 TCGA-CK-4951-01 3 38035465 38035465 T G VILL Splice_Site p.X45_splice 0.26 TCGA-CK-4951-01 3 38038996 38038996 T C VILL Missense_Mutation p.L195P 0.35 deleterious(0) probably_damaging(0.987) TCGA-CK-4951-01 3 38043069 38043069 C T VILL Silent p.I435I 0.32 TCGA-CK-4951-01 3 38051419 38051419 G A PLCD1 Silent p.V442V 0.31 TCGA-CK-4951-01 3 38058004 38058004 C T PLCD1 Missense_Mutation p.D157N 0.22 tolerated(0.44) benign(0.003) TCGA-CK-4951-01 3 38081118 38081118 G A DLEC1 Silent p.Q134Q 0.24 TCGA-CK-4951-01 3 38159049 38159049 A G DLEC1 Missense_Mutation p.M1478V 0.28 tolerated(0.32) benign(0.007) TCGA-CK-4951-01 3 38178478 38178478 A G ACAA1 Missense_Mutation p.S17P 0.25 tolerated(0.12) benign(0.001) TCGA-CK-4951-01 3 382490 382490 C T CHL1 Silent p.F133F 0.26 TCGA-CK-4951-01 3 38639395 38639395 A T SCN5A Missense_Mutation p.I696N 0.16 deleterious(0) possibly_damaging(0.841) TCGA-CK-4951-01 3 38753847 38753847 C T SCN10A Missense_Mutation p.M1298I 0.28 deleterious(0) possibly_damaging(0.596) TCGA-CK-4951-01 3 39153962 39153962 G A TTC21A Missense_Mutation p.R150K 0.23 tolerated(1) benign(0.02) TCGA-CK-4951-01 3 39229316 39229316 C T XIRP1 Missense_Mutation p.E541K 0.31 deleterious(0) possibly_damaging(0.844) TCGA-CK-4951-01 3 39229614 39229614 A - XIRP1 Frame_Shift_Del p.F441Lfs*39 0.20 TCGA-CK-4951-01 3 39230887 39230887 G A XIRP1 Missense_Mutation p.A17V 0.30 deleterious(0.01) possibly_damaging(0.833) TCGA-CK-4951-01 3 39307407 39307407 A G CX3CR1 Silent p.L230L 0.33 TCGA-CK-4951-01 3 40433550 40433550 C T ENTPD3 Missense_Mutation p.A26V 0.35 tolerated(0.23) benign(0.193) TCGA-CK-4951-01 3 41705190 41705190 C T ULK4 Silent p.Q993Q 0.37 TCGA-CK-4951-01 3 42244363 42244363 C T TRAK1 Intron 0.29 TCGA-CK-4951-01 3 424382 424382 A T CHL1 Intron 0.41 TCGA-CK-4951-01 3 42577644 42577644 C G VIPR1 Missense_Mutation p.N415K 0.21 deleterious(0.04) benign(0.001) TCGA-CK-4951-01 3 42727086 42727086 G A KLHL40 5'UTR 0.29 TCGA-CK-4951-01 3 42727245 42727245 G A KLHL40 Silent p.P45P 0.30 TCGA-CK-4951-01 3 42734582 42734582 G T HHATL Silent p.R459R 0.27 TCGA-CK-4951-01 3 42916751 42916751 G A CYP8B1 Silent p.F186F 0.45 TCGA-CK-4951-01 3 439976 439976 A T CHL1 Missense_Mutation p.E1054V 0.29 tolerated(0.14) benign(0.025) TCGA-CK-4951-01 3 44283803 44283803 G A TOPAZ1 Silent p.R86R 0.35 TCGA-CK-4951-01 3 4459790 4459790 G A SUMF1 Missense_Mutation p.S210F 0.26 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 3 44636352 44636352 T C ZNF660 Missense_Mutation p.C223R 0.15 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 3 44636506 44636506 A T ZNF660 Missense_Mutation p.Y274F 0.26 tolerated(0.12) possibly_damaging(0.762) TCGA-CK-4951-01 3 44636572 44636572 A G ZNF660 Missense_Mutation p.H296R 0.38 deleterious(0) probably_damaging(0.987) TCGA-CK-4951-01 3 44637164 44637164 A T ZNF660 3'UTR 0.22 TCGA-CK-4951-01 3 44673601 44673601 T C ZNF197 Silent p.S185S 0.35 TCGA-CK-4951-01 3 45077264 45077264 G C CLEC3B Missense_Mutation p.A153P 0.41 tolerated(0.27) possibly_damaging(0.582) TCGA-CK-4951-01 3 45134898 45134898 G A CDCP1 Missense_Mutation p.P500S 0.11 tolerated(0.16) benign(0.032) TCGA-CK-4951-01 3 45972763 45972763 G A FYCO1 Missense_Mutation p.P1351S 0.31 deleterious(0.02) probably_damaging(1) TCGA-CK-4951-01 3 46244692 46244692 G A CCR1 3'UTR 0.44 TCGA-CK-4951-01 3 46875295 46875295 C T PRSS42 Intron 0.33 TCGA-CK-4951-01 3 47044503 47044503 G A NBEAL2 Missense_Mutation p.R1839H 0.48 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 3 47045571 47045571 C T NBEAL2 Silent p.I1962I 0.24 TCGA-CK-4951-01 3 47165449 47165449 G A SETD2 Missense_Mutation p.P226L 0.39 tolerated_low_confidence(0.23) probably_damaging(0.954) TCGA-CK-4951-01 3 47459184 47459184 G A SCAP Silent p.G860G 0.33 TCGA-CK-4951-01 3 47459709 47459709 G A SCAP Silent p.L788L 0.32 TCGA-CK-4951-01 3 47462121 47462121 G A SCAP Nonsense_Mutation p.R496* 0.50 TCGA-CK-4951-01 3 47604146 47604146 C T CSPG5 Missense_Mutation p.G549S 0.31 tolerated(0.12) benign(0.303) TCGA-CK-4951-01 3 47629673 47629673 C T SMARCC1 3'UTR 0.30 TCGA-CK-4951-01 3 47651613 47651613 G A SMARCC1 Missense_Mutation p.P996S 0.28 tolerated(0.07) unknown(0) TCGA-CK-4951-01 3 47868847 47868847 C T DHX30 Silent p.D45D 0.25 TCGA-CK-4951-01 3 47868864 47868864 C T DHX30 Missense_Mutation p.P51L 0.30 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 3 47868913 47868913 C T DHX30 Silent p.I67I 0.24 TCGA-CK-4951-01 3 47889298 47889298 A T DHX30 Missense_Mutation p.Q713L 0.09 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 3 47910799 47910799 T - MAP4 Frame_Shift_Del p.T960Qfs*35 0.23 TCGA-CK-4951-01 3 47951243 47951243 G A MAP4 Intron 0.35 TCGA-CK-4951-01 3 48222318 48222318 A G CDC25A Missense_Mutation p.F148L 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 3 48465667 48465667 G A PLXNB1 Silent p.V118V 0.23 TCGA-CK-4951-01 3 48719530 48719530 C T NCKIPSD Silent p.P182P 0.42 TCGA-CK-4951-01 3 48725867 48725867 C T IP6K2 Missense_Mutation p.A374T 0.37 tolerated(0.65) benign(0.005) TCGA-CK-4951-01 3 48956020 48956020 C T ARIH2OS Missense_Mutation p.G188E 0.24 deleterious_low_confidence(0.05) probably_damaging(0.969) TCGA-CK-4951-01 3 49016914 49016914 G A ARIH2 Splice_Site p.X321_splice 0.39 TCGA-CK-4951-01 3 49038889 49038889 C G P4HTM Missense_Mutation p.T152S 0.25 tolerated(1) benign(0.003) TCGA-CK-4951-01 3 49044372 49044372 G A P4HTM 3'UTR 0.33 TCGA-CK-4951-01 3 49049199 49049199 C A WDR6 Missense_Mutation p.L108I 0.31 tolerated(0.39) benign(0.002) TCGA-CK-4951-01 3 49051263 49051263 G A WDR6 Missense_Mutation p.A796T 0.24 tolerated(0.44) benign(0.057) TCGA-CK-4951-01 3 49149934 49149934 T C USP19 Silent p.L876L 0.21 TCGA-CK-4951-01 3 49154520 49154520 G A USP19 Missense_Mutation p.P294L 0.20 tolerated_low_confidence(0.18) benign(0.005) TCGA-CK-4951-01 3 49282189 49282189 A T CCDC36 Intron 0.34 TCGA-CK-4951-01 3 49282292 49282292 A G CCDC36 Intron 0.24 TCGA-CK-4951-01 3 49689884 49689884 G A BSN Silent p.E965E 0.28 TCGA-CK-4951-01 3 49690197 49690197 A G BSN Missense_Mutation p.T1070A 0.32 unknown(0) TCGA-CK-4951-01 3 49694831 49694831 G A BSN Silent p.T2614T 0.33 TCGA-CK-4951-01 3 49694835 49694835 G A BSN Missense_Mutation p.D2616N 0.36 unknown(0) TCGA-CK-4951-01 3 49698714 49698714 C T BSN Missense_Mutation p.R3146C 0.47 unknown(0) TCGA-CK-4951-01 3 49699578 49699578 G A BSN Missense_Mutation p.D3434N 0.42 unknown(0) TCGA-CK-4951-01 3 49699582 49699582 G A BSN Missense_Mutation p.R3435H 0.44 unknown(0) TCGA-CK-4951-01 3 49719157 49719157 G A APEH Missense_Mutation p.G481S 0.25 deleterious(0.01) benign(0.035) TCGA-CK-4951-01 3 49722238 49722238 G A MST1 Missense_Mutation p.R568W 0.35 deleterious(0.02) benign(0.406) TCGA-CK-4951-01 3 49724709 49724709 G A MST1 Silent p.P160P 0.23 TCGA-CK-4951-01 3 49725041 49725041 C T MST1 Silent p.S101S 0.35 TCGA-CK-4951-01 3 49756301 49756301 C T AMIGO3 Missense_Mutation p.V200I 0.35 tolerated(0.47) benign(0.002) TCGA-CK-4951-01 3 49756428 49756428 G A AMIGO3 Silent p.R157R 0.25 TCGA-CK-4951-01 3 49756439 49756439 G A AMIGO3 Missense_Mutation p.H154Y 0.26 tolerated(0.07) benign(0.275) TCGA-CK-4951-01 3 49756523 49756523 G A AMIGO3 Missense_Mutation p.R126C 0.25 deleterious(0.01) probably_damaging(0.91) TCGA-CK-4951-01 3 49832799 49832799 G A CDHR4 Silent p.V287V 0.23 TCGA-CK-4951-01 3 49836839 49836839 G A CDHR4 Silent p.V27V 0.21 TCGA-CK-4951-01 3 49866590 49866590 C T TRAIP Silent p.V452V 0.32 TCGA-CK-4951-01 3 50148111 50148111 G A RBM5 Splice_Site p.X455_splice 0.31 TCGA-CK-4951-01 3 50148120 50148120 G A RBM5 Missense_Mutation p.D458N 0.29 deleterious(0) probably_damaging(0.971) TCGA-CK-4951-01 3 50222889 50222889 G A SEMA3F Silent p.V490V 0.33 TCGA-CK-4951-01 3 50225195 50225195 C T SEMA3F Nonsense_Mutation p.Q669* 0.28 TCGA-CK-4951-01 3 50295020 50295020 G A GNAI2 Silent p.T322T 0.43 TCGA-CK-4951-01 3 50313151 50313151 C T LSMEM2 5'Flank 0.34 TCGA-CK-4951-01 3 50316560 50316560 C T LSMEM2 Missense_Mutation p.P6S 0.33 tolerated_low_confidence(0.6) benign(0.001) TCGA-CK-4951-01 3 50328069 50328069 C T IFRD2 Missense_Mutation p.D98N 0.25 tolerated(0.11) probably_damaging(0.948) TCGA-CK-4951-01 3 50395970 50395970 C T TMEM115 Silent p.A175A 0.29 TCGA-CK-4951-01 3 50396592 50396592 G C TMEM115 5'UTR 0.34 TCGA-CK-4951-01 3 50402345 50402345 G A CACNA2D2 Missense_Mutation p.H1096Y 0.09 deleterious(0.02) benign(0.221) TCGA-CK-4951-01 3 50413444 50413444 C T CACNA2D2 Missense_Mutation p.V575M 0.33 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 3 51308345 51308345 A T DOCK3 Missense_Mutation p.M819L 0.30 tolerated(1) benign(0.003) TCGA-CK-4951-01 3 51418780 51418780 C T DOCK3 Silent p.C1961C 0.26 TCGA-CK-4951-01 3 51429770 51429770 G A RBM15B Missense_Mutation p.G314R 0.41 tolerated(0.19) possibly_damaging(0.525) TCGA-CK-4951-01 3 51429824 51429824 G A RBM15B Missense_Mutation p.D332N 0.26 deleterious(0.01) benign(0.181) TCGA-CK-4951-01 3 51457646 51457646 G A VPRBP Silent p.A497A 0.32 TCGA-CK-4951-01 3 51624522 51624522 A T RAD54L2 Missense_Mutation p.E29V 0.24 deleterious_low_confidence(0.04) unknown(0) TCGA-CK-4951-01 3 51968680 51968680 C T RRP9 Missense_Mutation p.A383T 0.35 deleterious(0.01) benign(0.176) TCGA-CK-4951-01 3 51980305 51980305 C T PARP3 Missense_Mutation p.R415C 0.16 deleterious(0.05) benign(0.372) TCGA-CK-4951-01 3 51990749 51990749 G A GPR62 Missense_Mutation p.G361R 0.37 tolerated(0.54) benign(0) TCGA-CK-4951-01 3 52264930 52264930 C G TWF2 Missense_Mutation p.A189P 0.39 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 3 52360184 52360184 C T DNAH1 Silent p.F145F 0.27 TCGA-CK-4951-01 3 52378639 52378639 G A DNAH1 Missense_Mutation p.E474K 0.48 benign(0.01) TCGA-CK-4951-01 3 52387239 52387239 G A DNAH1 Missense_Mutation p.A1050T 0.24 possibly_damaging(0.903) TCGA-CK-4951-01 3 52391723 52391723 C T DNAH1 Silent p.L1318L 0.27 TCGA-CK-4951-01 3 52400518 52400518 G A DNAH1 Missense_Mutation p.R1855Q 0.27 probably_damaging(0.995) TCGA-CK-4951-01 3 52427365 52427365 G A DNAH1 Missense_Mutation p.R3497H 0.30 probably_damaging(0.999) TCGA-CK-4951-01 3 52437725 52437725 G A BAP1 Missense_Mutation p.P479L 0.29 tolerated(0.21) benign(0) TCGA-CK-4951-01 3 52439230 52439230 G A BAP1 Missense_Mutation p.P338S 0.28 tolerated_low_confidence(0.31) benign(0.007) TCGA-CK-4951-01 3 52442586 52442586 G A BAP1 Silent p.I53I 0.21 TCGA-CK-4951-01 3 52506325 52506325 G A NISCH Missense_Mutation p.G194S 0.30 deleterious(0.01) probably_damaging(0.947) TCGA-CK-4951-01 3 52526568 52526568 C T NISCH 3'UTR 0.27 TCGA-CK-4951-01 3 52546401 52546401 C - STAB1 Frame_Shift_Del p.P978Lfs*57 0.29 TCGA-CK-4951-01 3 52550101 52550101 C T STAB1 Missense_Mutation p.P1331S 0.29 tolerated(0.14) possibly_damaging(0.546) TCGA-CK-4951-01 3 52597471 52597471 A T PBRM1 Missense_Mutation p.L1280Q 0.28 deleterious(0) possibly_damaging(0.883) TCGA-CK-4951-01 3 52620539 52620539 C T PBRM1 Missense_Mutation p.V1072M 0.28 deleterious(0) possibly_damaging(0.791) TCGA-CK-4951-01 3 52719952 52719952 C T GNL3 5'UTR 0.36 TCGA-CK-4951-01 3 52730584 52730584 G A GLT8D1 Missense_Mutation p.P141S 0.30 tolerated(1) benign(0.038) TCGA-CK-4951-01 3 52823754 52823754 C T ITIH1 Silent p.I735I 0.25 TCGA-CK-4951-01 3 52847497 52847497 C T ITIH4 Silent p.R911R 0.35 TCGA-CK-4951-01 3 52848363 52848363 C T ITIH4 Missense_Mutation p.D830N 0.27 tolerated(0.28) benign(0.246) TCGA-CK-4951-01 3 52941212 52941212 T - SFMBT1 Frame_Shift_Del p.K735Sfs*45 0.26 TCGA-CK-4951-01 3 53213647 53213647 C T PRKCD Missense_Mutation p.S57L 0.34 deleterious(0.04) benign(0.094) TCGA-CK-4951-01 3 53222852 53222852 C A PRKCD Missense_Mutation p.T511N 0.34 deleterious(0) possibly_damaging(0.867) TCGA-CK-4951-01 3 53531342 53531342 A T CACNA1D Silent p.V77V 0.31 TCGA-CK-4951-01 3 53820859 53820859 A T CACNA1D Silent p.V1621V 0.24 TCGA-CK-4951-01 3 53820869 53820869 A T CACNA1D Nonsense_Mutation p.K1625* 0.27 TCGA-CK-4951-01 3 56835789 56835789 T G ARHGEF3 Intron 0.36 TCGA-CK-4951-01 3 57131754 57131754 C T IL17RD Silent p.P659P 0.36 TCGA-CK-4951-01 3 57132243 57132243 G A IL17RD Silent p.T496T 0.23 TCGA-CK-4951-01 3 57233806 57233806 G A HESX1 Silent p.D47D 0.31 TCGA-CK-4951-01 3 57431761 57431761 A G DNAH12 Silent p.L1369L 0.46 TCGA-CK-4951-01 3 57488180 57488180 T C DNAH12 Silent p.L371L 0.33 TCGA-CK-4951-01 3 57882764 57882764 G C SLMAP Intron 0.28 TCGA-CK-4951-01 3 58139131 58139131 G A FLNB Missense_Mutation p.V2164I 0.42 tolerated(0.07) probably_damaging(0.997) TCGA-CK-4951-01 3 60522688 60522688 A T FHIT Missense_Mutation p.F3Y 0.56 tolerated(1) benign(0.006) TCGA-CK-4951-01 3 62248636 62248636 G A PTPRG Intron 0.20 TCGA-CK-4951-01 3 62535660 62535660 C A CADPS Missense_Mutation p.K628N 0.36 deleterious(0) benign(0.442) TCGA-CK-4951-01 3 64084975 64084975 C - PRICKLE2 Frame_Shift_Del p.D763Tfs*29 0.25 TCGA-CK-4951-01 3 65415597 65415597 A T MAGI1 Missense_Mutation p.Y589N 0.29 deleterious(0) probably_damaging(0.926) TCGA-CK-4951-01 3 69169062 69169062 T A LMOD3 Missense_Mutation p.E148D 0.31 tolerated(0.42) benign(0.001) TCGA-CK-4951-01 3 73433942 73433942 T C PDZRN3 Missense_Mutation p.D592G 0.32 deleterious(0.03) benign(0.016) TCGA-CK-4951-01 3 73434873 73434873 G A PDZRN3 Silent p.L528L 0.37 TCGA-CK-4951-01 3 74344319 74344319 T C CNTN3 Missense_Mutation p.N824D 0.15 tolerated(0.36) benign(0.006) TCGA-CK-4951-01 3 81635273 81635273 T A GBE1 Silent p.L435L 0.31 TCGA-CK-4951-01 3 87309042 87309042 T A POU1F1 3'UTR 0.24 TCGA-CK-4951-01 3 9000605 9000605 G T RAD18 Missense_Mutation p.N44K 0.28 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 3 93813893 93813893 C T NSUN3 Missense_Mutation p.P213L 0.25 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 3 9516185 9516185 G A SETD5 Missense_Mutation p.V1184I 0.20 deleterious(0.01) benign(0.111) TCGA-CK-4951-01 3 9746305 9746305 G A CPNE9 Missense_Mutation p.D35N 0.31 deleterious(0.02) probably_damaging(0.933) TCGA-CK-4951-01 3 9759802 9759802 A G CPNE9 Missense_Mutation p.I341V 0.22 tolerated(0.28) benign(0.388) TCGA-CK-4951-01 3 9783095 9783095 G A BRPF1 Missense_Mutation p.R609H 0.27 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 3 9831245 9831245 C T TADA3 Missense_Mutation p.R171H 0.32 deleterious(0.01) benign(0.34) TCGA-CK-4951-01 3 9986130 9986130 C T CRELD1 3'UTR 0.29 TCGA-CK-4951-01 3 99895244 99895244 G A CMSS1 Missense_Mutation p.M247I 0.25 deleterious(0.02) benign(0.01) TCGA-CK-4951-01 3 9990939 9990939 C T PRRT3 Silent p.E287E 0.33 TCGA-CK-4951-01 4 100470119 100470119 A - TRMT10A 3'UTR 0.35 TCGA-CK-4951-01 4 100529982 100529982 G A MTTP Silent p.V539V 0.36 TCGA-CK-4951-01 4 101108893 101108893 G A DDIT4L Nonsense_Mutation p.R175* 0.30 TCGA-CK-4951-01 4 103265741 103265741 G A SLC39A8 Silent p.L27L 0.23 TCGA-CK-4951-01 4 104032167 104032167 C G CENPE Silent p.V2514V 0.28 TCGA-CK-4951-01 4 104070043 104070043 A T CENPE Missense_Mutation p.N1267K 0.26 possibly_damaging(0.529) TCGA-CK-4951-01 4 10445070 10445070 C T ZNF518B Silent p.K961K 0.34 TCGA-CK-4951-01 4 10447518 10447518 C T ZNF518B Silent p.K145K 0.27 TCGA-CK-4951-01 4 107845847 107845847 G A DKK2 Silent p.I128I 0.34 TCGA-CK-4951-01 4 107845849 107845849 T A DKK2 Missense_Mutation p.I128F 0.35 deleterious(0.02) possibly_damaging(0.522) TCGA-CK-4951-01 4 110442616 110442616 C T SEC24B Missense_Mutation p.T781I 0.39 tolerated(0.16) benign(0.01) TCGA-CK-4951-01 4 110678934 110678934 C T CFI Missense_Mutation p.A297T 0.31 tolerated(0.54) benign(0.001) TCGA-CK-4951-01 4 1107281 1107281 C A RNF212 5'UTR 0.39 TCGA-CK-4951-01 4 113436101 113436101 G C NEUROG2 Silent p.G177G 0.39 TCGA-CK-4951-01 4 113567762 113567762 A G LARP7 Missense_Mutation p.R115G 0.24 deleterious(0) benign(0.363) TCGA-CK-4951-01 4 114823690 114823690 C A ARSJ Nonsense_Mutation p.G514* 0.35 TCGA-CK-4951-01 4 119951926 119951926 C T SYNPO2 Nonsense_Mutation p.R666* 0.39 TCGA-CK-4951-01 4 122744718 122744718 C T CCNA2 Silent p.Q22Q 0.35 TCGA-CK-4951-01 4 122744768 122744768 C T CCNA2 Missense_Mutation p.A6T 0.22 tolerated_low_confidence(0.67) benign(0.001) TCGA-CK-4951-01 4 122754477 122754477 G A BBS7 Missense_Mutation p.P529S 0.26 tolerated(0.1) probably_damaging(0.923) TCGA-CK-4951-01 4 123130320 123130320 G A KIAA1109 Missense_Mutation p.D587N 0.40 benign(0.131) TCGA-CK-4951-01 4 123156052 123156052 G A KIAA1109 Missense_Mutation p.E1150K 0.24 possibly_damaging(0.524) TCGA-CK-4951-01 4 123257436 123257436 C - KIAA1109 Frame_Shift_Del p.C3981Afs*3 0.35 TCGA-CK-4951-01 4 123280709 123280709 T C KIAA1109 Intron 0.38 TCGA-CK-4951-01 4 126328044 126328044 G A FAT4 Missense_Mutation p.A1773T 0.33 probably_damaging(0.995) TCGA-CK-4951-01 4 126373923 126373923 T A FAT4 Missense_Mutation p.F3918I 0.33 benign(0.346) TCGA-CK-4951-01 4 126408649 126408649 A G FAT4 Silent p.R4322R 0.26 TCGA-CK-4951-01 4 128605577 128605577 C T INTU Missense_Mutation p.R399C 0.19 tolerated(0.08) benign(0.005) TCGA-CK-4951-01 4 128694658 128694658 G - SLC25A31 Frame_Shift_Del p.G294Vfs*34 0.25 TCGA-CK-4951-01 4 128703791 128703791 A G HSPA4L Missense_Mutation p.E29G 0.28 deleterious(0) possibly_damaging(0.697) TCGA-CK-4951-01 4 128802485 128802485 G A PLK4 Intron 0.58 TCGA-CK-4951-01 4 13543531 13543531 G A NKX3-2 3'UTR 0.43 TCGA-CK-4951-01 4 138442481 138442481 C T PCDH18 Missense_Mutation p.R1037H 0.24 deleterious(0.04) possibly_damaging(0.748) TCGA-CK-4951-01 4 1388970 1388970 C A CRIPAK Missense_Mutation p.A224D 0.20 tolerated(0.06) possibly_damaging(0.82) TCGA-CK-4951-01 4 140811640 140811640 G A MAML3 Missense_Mutation p.A317V 0.38 probably_damaging(0.997) TCGA-CK-4951-01 4 141458655 141458655 A G ELMOD2 Missense_Mutation p.Y120C 0.48 deleterious(0) probably_damaging(0.983) TCGA-CK-4951-01 4 142053528 142053528 G A RNF150 Silent p.I145I 0.33 TCGA-CK-4951-01 4 142640537 142640537 T G IL15 5'UTR 0.48 TCGA-CK-4951-01 4 148407147 148407147 T - EDNRA Frame_Shift_Del p.Y106Tfs*6 0.21 TCGA-CK-4951-01 4 151504526 151504526 G A MAB21L2 Silent p.E115E 0.28 TCGA-CK-4951-01 4 151505119 151505119 G A MAB21L2 Missense_Mutation p.C313Y 0.23 tolerated(0.28) benign(0.033) TCGA-CK-4951-01 4 153897565 153897567 CCT - FHDC1 In_Frame_Del p.S1044del 0.29 TCGA-CK-4951-01 4 154508921 154508921 G A KIAA0922 Missense_Mutation p.A504T 0.31 tolerated(0.15) probably_damaging(0.992) TCGA-CK-4951-01 4 154517501 154517501 C T KIAA0922 Missense_Mutation p.A696V 0.30 tolerated(1) benign(0.007) TCGA-CK-4951-01 4 154624545 154624545 C T TLR2 Silent p.F162F 0.27 TCGA-CK-4951-01 4 155157472 155157472 C A DCHS2 Missense_Mutation p.V2323F 0.34 deleterious(0) probably_damaging(0.954) TCGA-CK-4951-01 4 15627559 15627559 T A FBXL5 Missense_Mutation p.D389V 0.42 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 4 15780176 15780176 C T CD38 Missense_Mutation p.R47C 0.35 tolerated(0.05) benign(0.271) TCGA-CK-4951-01 4 158262606 158262606 T A GRIA2 Missense_Mutation p.F679I 0.29 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 4 164394588 164394588 T C TKTL2 Missense_Mutation p.N100S 0.31 tolerated(0.69) benign(0.002) TCGA-CK-4951-01 4 164507008 164507008 C A MARCH1 Missense_Mutation p.V106F 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 4 165878134 165878134 C T FAM218A 5'UTR 0.46 TCGA-CK-4951-01 4 165878200 165878200 G A FAM218A Missense_Mutation p.G9D 0.26 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-CK-4951-01 4 168155269 168155269 G A SPOCK3 Missense_Mutation p.S19F 0.43 deleterious_low_confidence(0.04) benign(0.002) TCGA-CK-4951-01 4 169292809 169292809 T C DDX60L Missense_Mutation p.N1628D 0.35 tolerated(1) benign(0.001) TCGA-CK-4951-01 4 169312733 169312733 A - DDX60L Frame_Shift_Del p.F1291Lfs*11 0.26 TCGA-CK-4951-01 4 169911221 169911221 C T CBR4 3'UTR 0.09 TCGA-CK-4951-01 4 170037480 170037482 AGG - SH3RF1 In_Frame_Del p.P693del 0.21 TCGA-CK-4951-01 4 170625244 170625244 C T CLCN3 Silent p.H553H 0.10 TCGA-CK-4951-01 4 171008342 171008342 A G AADAT Silent p.P98P 0.30 TCGA-CK-4951-01 4 173942679 173942679 C - GALNTL6 Frame_Shift_Del p.R515Gfs*22 0.16 TCGA-CK-4951-01 4 177056355 177056355 A G WDR17 Missense_Mutation p.I423V 0.33 tolerated(0.34) benign(0.014) TCGA-CK-4951-01 4 17710925 17710925 G A FAM184B Missense_Mutation p.L162F 0.22 deleterious(0.01) benign(0.162) TCGA-CK-4951-01 4 1803143 1803143 C T FGFR3 Silent p.A165A 0.20 TCGA-CK-4951-01 4 1806176 1806176 C T FGFR3 Missense_Mutation p.R401C 0.37 tolerated(0.07) possibly_damaging(0.88) TCGA-CK-4951-01 4 1806628 1806628 C T FGFR3 Silent p.G450G 0.37 TCGA-CK-4951-01 4 1808052 1808052 C T FGFR3 Silent p.D678D 0.21 TCGA-CK-4951-01 4 1823955 1823955 G A LETM1 Nonsense_Mutation p.Q521* 0.32 TCGA-CK-4951-01 4 183574931 183574931 T A TENM3 Missense_Mutation p.H332Q 0.33 deleterious(0.03) benign(0.227) TCGA-CK-4951-01 4 183602985 183602985 G T TENM3 Missense_Mutation p.G618V 0.33 tolerated(0.06) benign(0.001) TCGA-CK-4951-01 4 183836196 183836196 C T DCTD Missense_Mutation p.V53M 0.26 deleterious(0) probably_damaging(0.989) TCGA-CK-4951-01 4 184366151 184366151 C T CDKN2AIP Silent p.T67T 0.29 TCGA-CK-4951-01 4 184930892 184930892 G A STOX2 Missense_Mutation p.D301N 0.40 deleterious(0) possibly_damaging(0.694) TCGA-CK-4951-01 4 184932574 184932574 A G STOX2 Silent p.P861P 0.37 TCGA-CK-4951-01 4 185565699 185565699 G A CASP3 Intron 0.23 TCGA-CK-4951-01 4 186067968 186067968 C T SLC25A4 Missense_Mutation p.A247V 0.27 deleterious(0.04) benign(0.005) TCGA-CK-4951-01 4 186084079 186084079 C T KIAA1430 Missense_Mutation p.R491K 0.35 tolerated(0.1) benign(0.02) TCGA-CK-4951-01 4 186366428 186366428 T G CCDC110 3'UTR 0.31 TCGA-CK-4951-01 4 187173195 187173195 G A KLKB1 Missense_Mutation p.R390H 0.41 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 4 187510186 187510186 G A FAT1 Missense_Mutation p.P4443S 0.30 possibly_damaging(0.742) TCGA-CK-4951-01 4 187518246 187518246 G A FAT1 Missense_Mutation p.H4150Y 0.28 benign(0.217) TCGA-CK-4951-01 4 187524994 187524994 G A FAT1 Silent p.G3562G 0.20 TCGA-CK-4951-01 4 187542733 187542733 T A FAT1 Silent p.S1669S 0.30 TCGA-CK-4951-01 4 187542765 187542765 T C FAT1 Missense_Mutation p.I1659V 0.27 benign(0.001) TCGA-CK-4951-01 4 1944270 1944270 A T WHSC1 Intron 0.20 TCGA-CK-4951-01 4 1986571 1986571 C T NELFA Missense_Mutation p.A345T 0.26 tolerated(0.79) benign(0.003) TCGA-CK-4951-01 4 1988138 1988138 C T NELFA Intron 0.30 TCGA-CK-4951-01 4 1991558 1991558 A G NELFA Missense_Mutation p.C152R 0.46 deleterious(0) possibly_damaging(0.726) TCGA-CK-4951-01 4 2065563 2065563 C T NAT8L Silent p.N206N 0.35 TCGA-CK-4951-01 4 24802293 24802293 A T SOD3 3'UTR 0.25 TCGA-CK-4951-01 4 24854769 24854769 C T CCDC149 Silent p.Q99Q 0.31 TCGA-CK-4951-01 4 26321464 26321464 C T RBPJ 5'UTR 0.30 TCGA-CK-4951-01 4 26744161 26744161 C G TBC1D19 Missense_Mutation p.T420S 0.19 tolerated(0.37) benign(0.019) TCGA-CK-4951-01 4 2695555 2695555 C - FAM193A Frame_Shift_Del p.P726Rfs*89 0.25 TCGA-CK-4951-01 4 27004581 27004581 T C STIM2 Missense_Mutation p.V279A 0.18 tolerated(0.1) probably_damaging(0.986) TCGA-CK-4951-01 4 2701451 2701451 G A FAM193A Silent p.E893E 0.32 TCGA-CK-4951-01 4 2822440 2822440 C A SH3BP2 Nonsense_Mutation p.Y89* 0.36 TCGA-CK-4951-01 4 2831786 2831786 C T SH3BP2 Missense_Mutation p.P442S 0.36 tolerated_low_confidence(0.07) benign(0.219) TCGA-CK-4951-01 4 2831787 2831787 C T SH3BP2 Missense_Mutation p.P442L 0.36 deleterious_low_confidence(0.04) benign(0.049) TCGA-CK-4951-01 4 2833402 2833402 A T SH3BP2 Missense_Mutation p.E506V 0.33 deleterious_low_confidence(0) possibly_damaging(0.554) TCGA-CK-4951-01 4 2877769 2877769 C T ADD1 Missense_Mutation p.P43S 0.29 deleterious(0) probably_damaging(0.961) TCGA-CK-4951-01 4 2899954 2899954 C T ADD1 Missense_Mutation p.A262V 0.28 deleterious(0) probably_damaging(0.98) TCGA-CK-4951-01 4 2930300 2930300 C T ADD1 3'UTR 0.43 TCGA-CK-4951-01 4 2933123 2933123 C T MFSD10 Missense_Mutation p.G365R 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 4 30723445 30723445 T A PCDH7 Missense_Mutation p.L134H 0.37 tolerated(0.12) possibly_damaging(0.879) TCGA-CK-4951-01 4 30724651 30724651 G A PCDH7 Missense_Mutation p.G536D 0.35 deleterious(0.03) benign(0.005) TCGA-CK-4951-01 4 3107105 3107105 C T HTT Missense_Mutation p.R184C 0.32 benign(0.418) TCGA-CK-4951-01 4 3174705 3174705 C T HTT Missense_Mutation p.S1338L 0.36 benign(0.097) TCGA-CK-4951-01 4 3241640 3241640 G A HTT Missense_Mutation p.A3095T 0.31 probably_damaging(0.981) TCGA-CK-4951-01 4 3318067 3318067 G C RGS12 Missense_Mutation p.G57A 0.35 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 4 3517878 3517878 C T LRPAP1 Missense_Mutation p.A267T 0.67 deleterious(0.03) benign(0.179) TCGA-CK-4951-01 4 3534110 3534110 C T LRPAP1 Silent p.L10L 0.17 TCGA-CK-4951-01 4 3534126 3534126 C T LRPAP1 Missense_Mutation p.R5K 0.19 tolerated_low_confidence(0.65) benign(0.364) TCGA-CK-4951-01 4 36126558 36126558 T - ARAP2 Frame_Shift_Del p.K1224Nfs*17 0.22 TCGA-CK-4951-01 4 37447799 37447799 G A KIAA1239 Missense_Mutation p.G1397R 0.30 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 4 38051424 38051424 G A TBC1D1 Silent p.Q605Q 0.09 TCGA-CK-4951-01 4 39465203 39465203 C T LIAS Missense_Mutation p.A124V 0.33 deleterious(0.03) benign(0.027) TCGA-CK-4951-01 4 39928481 39928481 C T PDS5A Missense_Mutation p.D115N 0.29 tolerated(0.44) possibly_damaging(0.679) TCGA-CK-4951-01 4 40356446 40356446 A C CHRNA9 Missense_Mutation p.K450T 0.31 tolerated(0.14) probably_damaging(0.994) TCGA-CK-4951-01 4 40947044 40947044 C T APBB2 Silent p.P294P 0.32 TCGA-CK-4951-01 4 41646584 41646584 C T LIMCH1 Nonsense_Mutation p.Q347* 0.30 TCGA-CK-4951-01 4 44450209 44450209 T A KCTD8 Missense_Mutation p.D111V 0.15 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 4 47427702 47427702 C T GABRB1 Silent p.H364H 0.25 TCGA-CK-4951-01 4 47643985 47643985 C T CORIN Missense_Mutation p.G717D 0.33 tolerated(0.37) benign(0.033) TCGA-CK-4951-01 4 47896318 47896318 T A NFXL1 Missense_Mutation p.E444V 0.40 tolerated(1) benign(0.074) TCGA-CK-4951-01 4 48529658 48529658 A G FRYL Missense_Mutation p.S2385P 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-CK-4951-01 4 48542809 48542809 A G FRYL Silent p.G1952G 0.22 TCGA-CK-4951-01 4 494348 494348 G C PIGG Silent p.V106V 0.27 TCGA-CK-4951-01 4 499636 499636 G A PIGG Missense_Mutation p.E164K 0.32 deleterious(0) possibly_damaging(0.811) TCGA-CK-4951-01 4 5016855 5016855 T C CYTL1 3'UTR 0.32 TCGA-CK-4951-01 4 5016904 5016904 T C CYTL1 Missense_Mutation p.T129A 0.35 deleterious_low_confidence(0.05) benign(0.055) TCGA-CK-4951-01 4 5021110 5021110 C T CYTL1 Silent p.R21R 0.26 TCGA-CK-4951-01 4 52765528 52765528 C T DCUN1D4 Missense_Mutation p.A200V 0.28 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 4 52899663 52899663 T C SGCB Silent p.G59G 0.21 TCGA-CK-4951-01 4 54342920 54342920 C T LNX1 Missense_Mutation p.R631Q 0.22 tolerated(0.14) benign(0.012) TCGA-CK-4951-01 4 54344872 54344872 A G LNX1 Missense_Mutation p.V508A 0.23 deleterious(0) possibly_damaging(0.626) TCGA-CK-4951-01 4 57180775 57180775 G A KIAA1211 Nonsense_Mutation p.W369* 0.33 TCGA-CK-4951-01 4 57776931 57776931 G A REST Missense_Mutation p.A43T 0.38 deleterious(0.05) possibly_damaging(0.84) TCGA-CK-4951-01 4 57797219 57797219 A T REST Missense_Mutation p.E732V 0.32 deleterious_low_confidence(0.04) benign(0) TCGA-CK-4951-01 4 57797793 57797793 A T REST Silent p.G923G 0.25 TCGA-CK-4951-01 4 57890168 57890168 T C POLR2B Intron 0.41 TCGA-CK-4951-01 4 647883 647883 G A PDE6B Silent p.V289V 0.11 TCGA-CK-4951-01 4 66535323 66535323 C - EPHA5 Frame_Shift_Del p.C47Afs*15 0.17 TCGA-CK-4951-01 4 667698 667698 C T ATP5I Intron 0.29 TCGA-CK-4951-01 4 6711353 6711353 G A MRFAP1L1 Missense_Mutation p.R2W 0.35 tolerated(0.1) possibly_damaging(0.835) TCGA-CK-4951-01 4 68359702 68359702 C T CENPC Silent p.L730L 0.32 TCGA-CK-4951-01 4 6865697 6865697 G A KIAA0232 Silent p.E1196E 0.24 TCGA-CK-4951-01 4 7044320 7044320 C T CCDC96 Missense_Mutation p.G116R 0.37 deleterious_low_confidence(0.02) unknown(0) TCGA-CK-4951-01 4 7044427 7044427 C T CCDC96 Missense_Mutation p.G80D 0.35 tolerated_low_confidence(0.14) unknown(0) TCGA-CK-4951-01 4 70707769 70707769 A T SULT1E1 Missense_Mutation p.D276E 0.25 tolerated(0.14) benign(0.021) TCGA-CK-4951-01 4 71670119 71670119 G A RUFY3 Missense_Mutation p.G569S 0.20 tolerated(0.29) benign(0.003) TCGA-CK-4951-01 4 72204827 72204827 A C SLC4A4 Intron 0.19 TCGA-CK-4951-01 4 72897614 72897614 G T NPFFR2 5'UTR 0.35 TCGA-CK-4951-01 4 72897733 72897733 C T NPFFR2 Missense_Mutation p.R39C 0.30 tolerated_low_confidence(0.06) benign(0.001) TCGA-CK-4951-01 4 74005732 74005732 C A ANKRD17 Missense_Mutation p.E867D 0.25 benign(0.112) TCGA-CK-4951-01 4 7435736 7435736 C T PSAPL1 Missense_Mutation p.G291S 0.26 tolerated(0.74) possibly_damaging(0.531) TCGA-CK-4951-01 4 76452247 76452247 T A THAP6 Missense_Mutation p.D164E 0.34 tolerated(0.49) benign(0.002) TCGA-CK-4951-01 4 76523261 76523261 C T CDKL2 Silent p.Q340Q 0.35 TCGA-CK-4951-01 4 76678724 76678724 T A USO1 Missense_Mutation p.V96E 0.18 tolerated(1) benign(0.026) TCGA-CK-4951-01 4 77045814 77045814 A T NUP54 Missense_Mutation p.H384Q 0.16 deleterious(0) possibly_damaging(0.846) TCGA-CK-4951-01 4 780386 780386 G T CPLX1 Missense_Mutation p.P103Q 0.33 tolerated(0.58) possibly_damaging(0.653) TCGA-CK-4951-01 4 78085428 78085428 T C CCNG2 Missense_Mutation p.I236T 0.33 deleterious(0.01) benign(0.048) TCGA-CK-4951-01 4 78695854 78695854 T A CNOT6L Silent p.L48L 0.10 TCGA-CK-4951-01 4 79832945 79832945 C T BMP2K Missense_Mutation p.H1082Y 0.32 deleterious_low_confidence(0) unknown(0) TCGA-CK-4951-01 4 8089996 8089996 G - ABLIM2 Frame_Shift_Del p.D120Tfs*3 0.23 TCGA-CK-4951-01 4 8221103 8221103 G C SH3TC1 Missense_Mutation p.G320R 0.27 tolerated(0.07) benign(0.2) TCGA-CK-4951-01 4 8295890 8295890 C G HTRA3 Missense_Mutation p.T338R 0.31 tolerated(1) benign(0.009) TCGA-CK-4951-01 4 83294655 83294655 G A HNRNPD Silent p.G59G 0.30 TCGA-CK-4951-01 4 8401347 8401347 C T ACOX3 Missense_Mutation p.R270H 0.18 deleterious(0.01) benign(0.24) TCGA-CK-4951-01 4 84200154 84200154 G A COQ2 Missense_Mutation p.R173C 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 4 84240560 84240560 A G HPSE Missense_Mutation p.Y146H 0.31 tolerated(0.5) benign(0.001) TCGA-CK-4951-01 4 88047263 88047263 C A AFF1 Silent p.P862P 0.38 TCGA-CK-4951-01 4 88379172 88379172 A G NUDT9 Nonstop_Mutation p.*351Wext*6 0.28 TCGA-CK-4951-01 4 88379177 88379177 A T NUDT9 3'UTR 0.29 TCGA-CK-4951-01 4 887189 887189 C T GAK Silent p.V322V 0.24 TCGA-CK-4951-01 4 88902707 88902707 C T SPP1 Silent p.S99S 0.30 TCGA-CK-4951-01 4 88973293 88973293 T - PKD2 Frame_Shift_Del p.F568Lfs*16 0.23 TCGA-CK-4951-01 4 89020584 89020584 C T ABCG2 Missense_Mutation p.G462R 0.33 deleterious(0) probably_damaging(0.975) TCGA-CK-4951-01 4 89358864 89358864 T A HERC6 Missense_Mutation p.I829K 0.10 deleterious(0) probably_damaging(0.966) TCGA-CK-4951-01 4 90034616 90034616 A - TIGD2 Frame_Shift_Del p.E166Rfs*26 0.26 TCGA-CK-4951-01 4 94750388 94750388 A G ATOH1 Missense_Mutation p.E104G 0.37 deleterious(0.02) benign(0.081) TCGA-CK-4951-01 4 949657 949657 C T TMEM175 Missense_Mutation p.T274M 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 4 96163734 96163734 C T UNC5C Silent p.R318R 0.44 TCGA-CK-4951-01 4 9785322 9785322 C T DRD5 3'UTR 0.31 TCGA-CK-4951-01 4 983956 983956 C T SLC26A1 Silent p.G257G 0.22 TCGA-CK-4951-01 5 101599422 101599422 G A SLCO4C1 Silent p.L289L 0.28 TCGA-CK-4951-01 5 102342590 102342590 T G PAM Missense_Mutation p.F630C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 5 1033490 1033490 C T NKD2 Missense_Mutation p.A69V 0.28 tolerated(0.36) benign(0.013) TCGA-CK-4951-01 5 1038354 1038354 C T NKD2 Missense_Mutation p.H408Y 0.40 deleterious(0.02) possibly_damaging(0.875) TCGA-CK-4951-01 5 1081737 1081737 C T SLC12A7 Missense_Mutation p.A418T 0.39 tolerated(1) benign(0.001) TCGA-CK-4951-01 5 108516498 108516498 T A FER Missense_Mutation p.I700N 0.37 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 108516507 108516507 T C FER Missense_Mutation p.F703S 0.36 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 110836705 110836705 G T STARD4 Missense_Mutation p.S131Y 0.25 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 5 112203218 112203218 G A SRP19 Missense_Mutation p.G140E 0.21 deleterious(0.02) unknown(0) TCGA-CK-4951-01 5 112257890 112257890 C T REEP5 5'UTR 0.29 TCGA-CK-4951-01 5 112346458 112346458 T C DCP2 Silent p.C351C 0.25 TCGA-CK-4951-01 5 112876691 112876691 G T YTHDC2 Nonsense_Mutation p.E413* 0.20 TCGA-CK-4951-01 5 114956225 114956225 A G TMED7-TICAM2 Silent p.S115S 0.33 TCGA-CK-4951-01 5 115298354 115298354 G A AQPEP Missense_Mutation p.A14T 0.27 tolerated(1) benign(0.002) TCGA-CK-4951-01 5 115782607 115782607 G A SEMA6A Missense_Mutation p.T932I 0.22 deleterious(0.01) benign(0.04) TCGA-CK-4951-01 5 115831201 115831201 G A SEMA6A Missense_Mutation p.H118Y 0.27 tolerated(0.72) probably_damaging(0.998) TCGA-CK-4951-01 5 11732266 11732266 G A CTNND2 Silent p.L52L 0.27 TCGA-CK-4951-01 5 118324157 118324157 G A DTWD2 Missense_Mutation p.P17L 0.32 tolerated_low_confidence(0.12) benign(0.001) TCGA-CK-4951-01 5 118445887 118445887 T C DMXL1 Missense_Mutation p.S136P 0.35 deleterious(0.02) possibly_damaging(0.756) TCGA-CK-4951-01 5 118469856 118469856 T A DMXL1 Missense_Mutation p.I746K 0.24 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 5 118788153 118788153 A G HSD17B4 5'Flank 0.24 TCGA-CK-4951-01 5 118788326 118788326 C T HSD17B4 5'UTR 0.41 TCGA-CK-4951-01 5 120022374 120022374 C T PRR16 Silent p.I272I 0.24 TCGA-CK-4951-01 5 121767681 121767681 C T SNCAIP Silent p.C400C 0.33 TCGA-CK-4951-01 5 122685784 122685784 C T CEP120 Splice_Site p.X861_splice 0.29 TCGA-CK-4951-01 5 122881322 122881322 A T CSNK1G3 5'UTR 0.41 TCGA-CK-4951-01 5 122881375 122881375 A T CSNK1G3 Missense_Mutation p.K6N 0.34 tolerated_low_confidence(0.14) possibly_damaging(0.607) TCGA-CK-4951-01 5 122881395 122881395 A T CSNK1G3 Missense_Mutation p.D13V 0.32 tolerated_low_confidence(0.08) benign(0.158) TCGA-CK-4951-01 5 1243783 1243783 A T SLC6A18 Silent p.L415L 0.28 TCGA-CK-4951-01 5 125880645 125880645 T A ALDH7A1 3'UTR 0.35 TCGA-CK-4951-01 5 127471389 127471389 C T SLC12A2 Intron 0.22 TCGA-CK-4951-01 5 127636612 127636612 G A FBN2 Silent p.V2021V 0.17 TCGA-CK-4951-01 5 128365354 128365354 T C SLC27A6 Missense_Mutation p.V546A 0.27 tolerated(0.45) benign(0.056) TCGA-CK-4951-01 5 130778084 130778084 G A RAPGEF6 Missense_Mutation p.H1198Y 0.30 tolerated_low_confidence(1) benign(0.002) TCGA-CK-4951-01 5 131398363 131398363 G A IL3 Missense_Mutation p.R113Q 0.33 tolerated(0.59) benign(0.408) TCGA-CK-4951-01 5 131820114 131820114 G A IRF1 Missense_Mutation p.P265S 0.42 tolerated(0.75) benign(0.046) TCGA-CK-4951-01 5 131877760 131877760 C G IL5 Missense_Mutation p.E85Q 0.37 deleterious(0.02) possibly_damaging(0.449) TCGA-CK-4951-01 5 132037900 132037900 G C KIF3A Missense_Mutation p.A561G 0.24 tolerated(0.22) benign(0.057) TCGA-CK-4951-01 5 132062067 132062067 G A KIF3A Missense_Mutation p.A135V 0.30 deleterious(0) probably_damaging(0.969) TCGA-CK-4951-01 5 132085078 132085078 C T CCNI2 Silent p.S199S 0.33 TCGA-CK-4951-01 5 132097211 132097211 G A SEPT8 Missense_Mutation p.R301W 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 132097314 132097314 C T SEPT8 Silent p.E266E 0.18 TCGA-CK-4951-01 5 132151446 132151446 A T SOWAHA 3'UTR 0.25 TCGA-CK-4951-01 5 132158653 132158653 G A SHROOM1 Silent p.A798A 0.26 TCGA-CK-4951-01 5 132232139 132232139 C A AFF4 Missense_Mutation p.G728V 0.26 deleterious(0.04) probably_damaging(1) TCGA-CK-4951-01 5 132232669 132232669 T C AFF4 Silent p.A551A 0.33 TCGA-CK-4951-01 5 132585145 132585145 C T FSTL4 Missense_Mutation p.R284H 0.44 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 5 133304212 133304212 C G C5orf15 Missense_Mutation p.A22P 0.33 deleterious_low_confidence(0.03) benign(0.122) TCGA-CK-4951-01 5 133474656 133474656 C T TCF7 Nonsense_Mutation p.Q188* 0.28 TCGA-CK-4951-01 5 133643975 133643975 T C CDKL3 Silent p.P406P 0.27 TCGA-CK-4951-01 5 133895614 133895614 C T JADE2 Missense_Mutation p.R136C 0.10 deleterious(0.05) benign(0.298) TCGA-CK-4951-01 5 134033600 134033600 C T SEC24A Missense_Mutation p.R707W 0.31 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 5 134192670 134192670 C T C5orf24 3'UTR 0.29 TCGA-CK-4951-01 5 134194102 134194102 A G C5orf24 3'UTR 0.24 TCGA-CK-4951-01 5 134870591 134870591 C T NEUROG1 3'UTR 0.42 TCGA-CK-4951-01 5 135498997 135498997 A T SMAD5 Missense_Mutation p.D231V 0.31 tolerated(0.24) benign(0.003) TCGA-CK-4951-01 5 135692372 135692372 C T TRPC7 Missense_Mutation p.S235N 0.36 tolerated(0.1) possibly_damaging(0.651) TCGA-CK-4951-01 5 137610044 137610044 A T GFRA3 Missense_Mutation p.S24T 0.18 tolerated(1) unknown(0) TCGA-CK-4951-01 5 137681292 137681292 G A FAM53C Missense_Mutation p.M305I 0.39 deleterious(0) benign(0.216) TCGA-CK-4951-01 5 137727643 137727643 C T KDM3B Silent p.G774G 0.36 TCGA-CK-4951-01 5 137756649 137756649 G C KDM3B Missense_Mutation p.A1324P 0.23 tolerated(0.52) benign(0.016) TCGA-CK-4951-01 5 137802581 137802581 C A EGR1 Missense_Mutation p.T148N 0.25 tolerated(0.23) possibly_damaging(0.728) TCGA-CK-4951-01 5 137802614 137802614 G A EGR1 Missense_Mutation p.S159N 0.45 deleterious(0.02) possibly_damaging(0.517) TCGA-CK-4951-01 5 137802658 137802658 G A EGR1 Missense_Mutation p.A174T 0.53 tolerated(0.25) benign(0.074) TCGA-CK-4951-01 5 137903404 137903404 G A HSPA9 Silent p.Y181Y 0.29 TCGA-CK-4951-01 5 13811877 13811877 G A DNAH5 Missense_Mutation p.T2429I 0.33 possibly_damaging(0.507) TCGA-CK-4951-01 5 138260270 138260270 C T CTNNA1 Missense_Mutation p.R540C 0.36 tolerated(0.14) benign(0.108) TCGA-CK-4951-01 5 13865959 13865959 A G DNAH5 Silent p.L1391L 0.34 TCGA-CK-4951-01 5 138707725 138707725 T A SLC23A1 Silent p.T593T 0.31 TCGA-CK-4951-01 5 138728425 138728425 G A PROB1 Silent p.A782A 0.38 TCGA-CK-4951-01 5 138775114 138775114 G A DNAJC18 Silent p.S7S 0.35 TCGA-CK-4951-01 5 138860909 138860909 C T TMEM173 Nonsense_Mutation p.W82* 0.29 TCGA-CK-4951-01 5 13913960 13913960 A T DNAH5 Missense_Mutation p.F476L 0.42 benign(0.418) TCGA-CK-4951-01 5 13913984 13913984 A G DNAH5 Silent p.Y468Y 0.41 TCGA-CK-4951-01 5 139909237 139909237 C G ANKHD1 Missense_Mutation p.R2236G 0.28 probably_damaging(0.991) TCGA-CK-4951-01 5 139941003 139941003 T A APBB3 Missense_Mutation p.D267V 0.31 tolerated(0.31) benign(0.415) TCGA-CK-4951-01 5 140011768 140011768 A G CD14 Silent p.P267P 0.28 TCGA-CK-4951-01 5 140011849 140011849 C T CD14 Silent p.V240V 0.37 TCGA-CK-4951-01 5 140012733 140012733 C T CD14 5'UTR 0.31 TCGA-CK-4951-01 5 140021523 140021523 C T TMCO6 Missense_Mutation p.A128V 0.36 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 5 140035458 140035458 C T IK Missense_Mutation p.R228W 0.29 deleterious(0) possibly_damaging(0.896) TCGA-CK-4951-01 5 140052931 140052931 C G DND1 Missense_Mutation p.E23Q 0.27 tolerated(0.39) benign(0.332) TCGA-CK-4951-01 5 140071290 140071290 C T HARS2 Silent p.L19L 0.33 TCGA-CK-4951-01 5 140073185 140073185 G A HARS2 Missense_Mutation p.A40T 0.38 tolerated(0.54) benign(0.066) TCGA-CK-4951-01 5 140182423 140182423 C T PCDHA3 Silent p.S547S 0.35 TCGA-CK-4951-01 5 140187954 140187954 C A PCDHA4 Silent p.P394P 0.36 TCGA-CK-4951-01 5 140201447 140201447 G A PCDHA5 Silent p.Q29Q 0.25 TCGA-CK-4951-01 5 140202963 140202963 A G PCDHA5 Missense_Mutation p.S535G 0.24 deleterious_low_confidence(0.03) benign(0.144) TCGA-CK-4951-01 5 140209233 140209233 G A PCDHA6 Silent p.A519A 0.27 TCGA-CK-4951-01 5 140222691 140222691 C T PCDHA8 Silent p.R595R 0.28 TCGA-CK-4951-01 5 140230000 140230000 G A PCDHA9 Silent p.T640T 0.28 TCGA-CK-4951-01 5 140230065 140230065 C T PCDHA9 Missense_Mutation p.T662M 0.35 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-CK-4951-01 5 140242196 140242196 T C AC005609.1 3'UTR 0.34 TCGA-CK-4951-01 5 140256418 140256418 C T PCDHA12 Missense_Mutation p.A454V 0.28 tolerated_low_confidence(0.33) benign(0.007) TCGA-CK-4951-01 5 140474789 140474789 G T PCDHB2 Nonsense_Mutation p.E139* 0.33 TCGA-CK-4951-01 5 140515803 140515803 G A PCDHB5 Missense_Mutation p.V263I 0.30 tolerated_low_confidence(0.07) benign(0.001) TCGA-CK-4951-01 5 140553301 140553301 T A PCDHB7 Missense_Mutation p.N295K 0.18 deleterious_low_confidence(0.03) benign(0.163) TCGA-CK-4951-01 5 140559314 140559314 C T PCDHB8 Nonsense_Mutation p.Q567* 0.11 TCGA-CK-4951-01 5 140604578 140604578 G A PCDHB14 Missense_Mutation p.A501T 0.32 tolerated_low_confidence(0.11) benign(0.021) TCGA-CK-4951-01 5 140605201 140605201 C T PCDHB14 Silent p.F708F 0.52 TCGA-CK-4951-01 5 140718836 140718836 G A PCDHGA2 Missense_Mutation p.A100T 0.30 tolerated_low_confidence(0.13) benign(0.036) TCGA-CK-4951-01 5 140720675 140720675 G A PCDHGA2 Missense_Mutation p.A713T 0.36 deleterious_low_confidence(0.02) benign(0.128) TCGA-CK-4951-01 5 140724602 140724602 A T PCDHGA3 Silent p.L334L 0.26 TCGA-CK-4951-01 5 140725320 140725320 G A PCDHGA3 Missense_Mutation p.G574S 0.29 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-CK-4951-01 5 140729830 140729830 G A PCDHGB1 Translation_Start_Site p.M1? 0.28 deleterious(0.03) benign(0) TCGA-CK-4951-01 5 140731533 140731533 C T PCDHGB1 Missense_Mutation p.A569V 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-CK-4951-01 5 140731813 140731813 T C PCDHGB1 Silent p.D662D 0.26 TCGA-CK-4951-01 5 140744692 140744692 C T PCDHGA5 Silent p.T265T 0.26 TCGA-CK-4951-01 5 140745087 140745087 C T PCDHGA5 Missense_Mutation p.S397L 0.33 tolerated_low_confidence(0.13) benign(0.074) TCGA-CK-4951-01 5 140750393 140750393 A G PCDHGB3 Silent p.E144E 0.27 TCGA-CK-4951-01 5 140751874 140751874 C T PCDHGB3 Missense_Mutation p.A638V 0.25 tolerated(0.47) benign(0.165) TCGA-CK-4951-01 5 140753973 140753973 T C PCDHGA6 Missense_Mutation p.I108T 0.29 deleterious_low_confidence(0) benign(0.364) TCGA-CK-4951-01 5 140764599 140764599 G A PCDHGA7 Silent p.L711L 0.36 TCGA-CK-4951-01 5 140788157 140788157 G A PCDHGB6 Missense_Mutation p.A130T 0.27 tolerated(0.24) benign(0.014) TCGA-CK-4951-01 5 140793771 140793771 T C PCDHGA10 Silent p.D343D 0.39 TCGA-CK-4951-01 5 140797465 140797465 G A PCDHGB7 Silent p.P13P 0.30 TCGA-CK-4951-01 5 1409888 1409888 G A SLC6A3 Missense_Mutation p.T449M 0.36 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 5 141243409 141243409 G A PCDH1 Silent p.S829S 0.39 TCGA-CK-4951-01 5 141248191 141248191 C T PCDH1 Silent p.R282R 0.22 TCGA-CK-4951-01 5 141385829 141385829 T A GNPDA1 Missense_Mutation p.I97F 0.25 deleterious(0) probably_damaging(0.964) TCGA-CK-4951-01 5 142586874 142586874 G A ARHGAP26 Silent p.R700R 0.36 TCGA-CK-4951-01 5 145878108 145878108 T C TCERG1 Silent p.F747F 0.33 TCGA-CK-4951-01 5 14601081 14601081 C T FAM105A Silent p.D24D 0.36 TCGA-CK-4951-01 5 14693013 14693013 C T FAM105B Silent p.Y305Y 0.42 TCGA-CK-4951-01 5 14693014 14693014 C T FAM105B Missense_Mutation p.R306W 0.44 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 146970987 146970987 T A JAKMIP2 3'UTR 0.53 TCGA-CK-4951-01 5 147016597 147016597 G T JAKMIP2 Silent p.L515L 0.14 TCGA-CK-4951-01 5 148885001 148885001 G A CSNK1A1 Intron 0.32 TCGA-CK-4951-01 5 149200035 149200035 C T PPARGC1B Missense_Mutation p.P40S 0.23 deleterious(0.05) probably_damaging(0.962) TCGA-CK-4951-01 5 149213248 149213248 C T PPARGC1B Missense_Mutation p.R538W 0.44 deleterious(0.02) possibly_damaging(0.634) TCGA-CK-4951-01 5 149417078 149417078 G C HMGXB3 Missense_Mutation p.D801H 0.21 deleterious(0) probably_damaging(0.987) TCGA-CK-4951-01 5 149504289 149504289 C T PDGFRB Splice_Site p.X638_splice 0.36 TCGA-CK-4951-01 5 149677576 149677576 G A ARSI Missense_Mutation p.S304L 0.42 tolerated(0.12) benign(0.052) TCGA-CK-4951-01 5 149915317 149915317 T C NDST1 Missense_Mutation p.V436A 0.11 deleterious(0.03) benign(0.158) TCGA-CK-4951-01 5 150028607 150028607 G A SYNPO Missense_Mutation p.S501N 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-4951-01 5 150138521 150138521 T A DCTN4 Missense_Mutation p.Y12F 0.31 deleterious(0.04) benign(0.429) TCGA-CK-4951-01 5 150310987 150310987 T A ZNF300P1 RNA 0.43 TCGA-CK-4951-01 5 150410295 150410295 A T TNIP1 Missense_Mutation p.N630K 0.28 tolerated_low_confidence(0.13) benign(0.037) TCGA-CK-4951-01 5 150502572 150502572 C T ANXA6 Missense_Mutation p.G380E 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 150584958 150584958 C T CCDC69 Intron 0.34 TCGA-CK-4951-01 5 150701772 150701772 A G SLC36A2 Missense_Mutation p.Y339H 0.29 deleterious(0.04) possibly_damaging(0.483) TCGA-CK-4951-01 5 150946044 150946044 C T FAT2 Missense_Mutation p.A817T 0.28 benign(0.02) TCGA-CK-4951-01 5 153833016 153833016 A G SAP30L Missense_Mutation p.K127E 0.16 deleterious(0.02) probably_damaging(0.963) TCGA-CK-4951-01 5 154282112 154282112 A T GEMIN5 Silent p.A951A 0.27 TCGA-CK-4951-01 5 154292548 154292548 A T GEMIN5 Missense_Mutation p.S636T 0.45 tolerated(0.54) benign(0.141) TCGA-CK-4951-01 5 156184625 156184625 G A SGCD Silent p.E203E 0.29 TCGA-CK-4951-01 5 156456716 156456716 G A HAVCR1 3'UTR 0.25 TCGA-CK-4951-01 5 156727766 156727766 G A CYFIP2 Missense_Mutation p.C118Y 0.27 deleterious(0) possibly_damaging(0.765) TCGA-CK-4951-01 5 156770365 156770365 G A FNDC9 Silent p.S60S 0.27 TCGA-CK-4951-01 5 156908931 156908931 C T ADAM19 Silent p.P857P 0.38 TCGA-CK-4951-01 5 157214713 157214713 A T CLINT1 Missense_Mutation p.S625T 0.29 tolerated(0.87) benign(0.05) TCGA-CK-4951-01 5 158135168 158135168 G T EBF1 Missense_Mutation p.S521R 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-CK-4951-01 5 159821537 159821537 C T C5orf54 Missense_Mutation p.E321K 0.28 tolerated(0.14) probably_damaging(0.997) TCGA-CK-4951-01 5 159830286 159830286 T C SLU7 3'UTR 0.21 TCGA-CK-4951-01 5 161530988 161530988 T C GABRG2 Missense_Mutation p.F282S 0.34 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 5 16694613 16694614 - T MYO10 Frame_Shift_Ins p.G1223Rfs*28 0.17 TCGA-CK-4951-01 5 167420117 167420117 C T TENM2 Silent p.S372S 0.32 TCGA-CK-4951-01 5 167626113 167626113 G A TENM2 Silent p.E1052E 0.27 TCGA-CK-4951-01 5 167655126 167655126 G C TENM2 Missense_Mutation p.R1837S 0.23 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 5 167671470 167671470 C T TENM2 Missense_Mutation p.R1856W 0.23 deleterious(0) possibly_damaging(0.841) TCGA-CK-4951-01 5 170380676 170380676 A T RANBP17 Missense_Mutation p.H515L 0.08 deleterious(0.04) benign(0.15) TCGA-CK-4951-01 5 170737238 170737238 C T TLX3 Missense_Mutation p.P169L 0.30 deleterious(0) benign(0.415) TCGA-CK-4951-01 5 171481577 171481577 A T STK10 Missense_Mutation p.L883Q 0.50 deleterious(0) possibly_damaging(0.903) TCGA-CK-4951-01 5 171766744 171766744 C T SH3PXD2B Silent p.L455L 0.42 TCGA-CK-4951-01 5 171780919 171780919 T C SH3PXD2B Missense_Mutation p.K253R 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-CK-4951-01 5 171780969 171780969 G A SH3PXD2B Silent p.D236D 0.20 TCGA-CK-4951-01 5 171780976 171780976 G A SH3PXD2B Missense_Mutation p.A234V 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 171849449 171849449 G A SH3PXD2B Missense_Mutation p.R43W 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 5 172660087 172660087 C G NKX2-5 Missense_Mutation p.E154Q 0.35 deleterious(0) probably_damaging(0.982) TCGA-CK-4951-01 5 175749395 175749395 C T SIMC1 Missense_Mutation p.S236F 0.36 tolerated(0.06) benign(0.043) TCGA-CK-4951-01 5 175775336 175775336 C T KIAA1191 Silent p.E161E 0.35 TCGA-CK-4951-01 5 176638351 176638351 A T NSD1 Missense_Mutation p.D984V 0.33 deleterious_low_confidence(0) benign(0.179) TCGA-CK-4951-01 5 176675202 176675202 G A NSD1 Silent p.R1506R 0.33 TCGA-CK-4951-01 5 176687108 176687108 T A NSD1 Silent p.P1695P 0.35 TCGA-CK-4951-01 5 176734413 176734413 G A MXD3 3'UTR 0.21 TCGA-CK-4951-01 5 176893958 176893958 G A DBN1 Missense_Mutation p.R223C 0.26 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 176910962 176910962 G A PDLIM7 Missense_Mutation p.T398M 0.38 deleterious(0) probably_damaging(0.989) TCGA-CK-4951-01 5 176918087 176918087 C A PDLIM7 Missense_Mutation p.E153D 0.24 tolerated(0.17) benign(0.009) TCGA-CK-4951-01 5 176931827 176931827 C T DOK3 Missense_Mutation p.A244T 0.22 tolerated(0.24) benign(0.035) TCGA-CK-4951-01 5 176951523 176951523 G A FAM193B Silent p.P653P 0.29 TCGA-CK-4951-01 5 178408824 178408824 G T GRM6 Missense_Mutation p.S823Y 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-CK-4951-01 5 178416279 178416279 G A GRM6 Silent p.T380T 0.33 TCGA-CK-4951-01 5 178418967 178418967 C T GRM6 Missense_Mutation p.V208M 0.28 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 5 178459872 178459872 G A ZNF879 Missense_Mutation p.R308Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 5 178552120 178552120 G A ADAMTS2 Missense_Mutation p.R938C 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 178564863 178564863 C T ADAMTS2 Missense_Mutation p.A620T 0.28 tolerated(0.16) benign(0.001) TCGA-CK-4951-01 5 178579172 178579173 - G ADAMTS2 Frame_Shift_Ins p.D535Gfs*13 0.19 TCGA-CK-4951-01 5 179045245 179045245 G A HNRNPH1 Missense_Mutation p.R206W 0.26 tolerated(0.05) benign(0.049) TCGA-CK-4951-01 5 179222776 179222776 G - LTC4S Intron 0.40 TCGA-CK-4951-01 5 179498517 179498517 C T RNF130 Silent p.G62G 0.18 TCGA-CK-4951-01 5 180219501 180219501 G A MGAT1 Silent p.S157S 0.34 TCGA-CK-4951-01 5 180662523 180662523 T C TRIM41 3'UTR 0.33 TCGA-CK-4951-01 5 1816022 1816022 C T NDUFS6 Missense_Mutation p.H123Y 0.34 deleterious(0) possibly_damaging(0.481) TCGA-CK-4951-01 5 22143015 22143016 - T CDH12 Intron 0.34 TCGA-CK-4951-01 5 251128 251128 G A SDHA Missense_Mutation p.V525M 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.901) TCGA-CK-4951-01 5 26881287 26881287 T - CDH9 Frame_Shift_Del p.K776Nfs*19 0.08 TCGA-CK-4951-01 5 33462203 33462203 G C TARS Splice_Site p.X610_splice 0.33 TCGA-CK-4951-01 5 33616076 33616076 C T ADAMTS12 Missense_Mutation p.E749K 0.23 tolerated(0.06) benign(0.098) TCGA-CK-4951-01 5 33637760 33637760 G A ADAMTS12 Missense_Mutation p.R604W 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 34949704 34949704 A - DNAJC21 Frame_Shift_Del p.K416Sfs*33 0.27 TCGA-CK-4951-01 5 35065217 35065217 C T PRLR Missense_Mutation p.A615T 0.16 tolerated(0.64) benign(0.007) TCGA-CK-4951-01 5 38370471 38370471 G A EGFLAM Missense_Mutation p.D207N 0.34 tolerated_low_confidence(0.38) benign(0.005) TCGA-CK-4951-01 5 38950214 38950214 T C RICTOR Missense_Mutation p.T1246A 0.27 tolerated(0.26) benign(0.006) TCGA-CK-4951-01 5 39202272 39202272 A T FYB Nonsense_Mutation p.L274* 0.09 TCGA-CK-4951-01 5 39202444 39202444 C T FYB Missense_Mutation p.E217K 0.35 tolerated(0.09) benign(0.079) TCGA-CK-4951-01 5 40767586 40767586 G A PRKAA1 Missense_Mutation p.A283V 0.27 tolerated(0.36) probably_damaging(0.911) TCGA-CK-4951-01 5 40853946 40853946 A G CARD6 Missense_Mutation p.T838A 0.24 tolerated(1) benign(0.002) TCGA-CK-4951-01 5 41382187 41382187 A G PLCXD3 Missense_Mutation p.W185R 0.35 tolerated(0.06) probably_damaging(0.927) TCGA-CK-4951-01 5 41927145 41927145 C T FBXO4 Missense_Mutation p.L74F 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 5 427921 427921 G A AHRR Splice_Site p.X259_splice 0.22 TCGA-CK-4951-01 5 43616140 43616140 C T NNT Missense_Mutation p.A191V 0.39 tolerated(0.15) benign(0.048) TCGA-CK-4951-01 5 45262184 45262184 G C HCN1 Missense_Mutation p.R838G 0.16 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-CK-4951-01 5 462157 462157 G A EXOC3 Missense_Mutation p.A492T 0.35 tolerated(0.08) probably_damaging(0.989) TCGA-CK-4951-01 5 465306 465306 C G EXOC3 Missense_Mutation p.S619R 0.41 tolerated(0.05) possibly_damaging(0.604) TCGA-CK-4951-01 5 482682 482682 A C SLC9A3 Missense_Mutation p.F446C 0.25 deleterious(0) probably_damaging(0.943) TCGA-CK-4951-01 5 50137942 50137942 C T PARP8 3'UTR 0.30 TCGA-CK-4951-01 5 52285333 52285333 C T ITGA2 Missense_Mutation p.P12L 0.24 tolerated(0.44) benign(0) TCGA-CK-4951-01 5 52322598 52322598 G A ITGA2 Missense_Mutation p.A29T 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 5 52351399 52351399 C T ITGA2 Nonsense_Mutation p.R271* 0.27 TCGA-CK-4951-01 5 53182415 53182415 T - ARL15 Frame_Shift_Del p.D198Tfs*5 0.23 TCGA-CK-4951-01 5 56168480 56168480 G C MAP3K1 Missense_Mutation p.C479S 0.32 deleterious(0.03) benign(0.424) TCGA-CK-4951-01 5 56778059 56778059 C T ACTBL2 Missense_Mutation p.G159E 0.19 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CK-4951-01 5 57753394 57753394 G A PLK2 Missense_Mutation p.P244S 0.09 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 5 57913639 57913639 T A RAB3C Missense_Mutation p.I65N 0.30 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 5 60240998 60240998 C T NDUFAF2 5'UTR 0.22 TCGA-CK-4951-01 5 61802141 61802141 T C IPO11 Missense_Mutation p.V620A 0.31 deleterious(0) possibly_damaging(0.775) TCGA-CK-4951-01 5 61875764 61875764 C T LRRC70 Missense_Mutation p.R167C 0.29 tolerated(0.36) benign(0.008) TCGA-CK-4951-01 5 63509491 63509491 T A RNF180 Missense_Mutation p.V113E 0.25 deleterious(0) possibly_damaging(0.804) TCGA-CK-4951-01 5 637680 637680 C T CEP72 Missense_Mutation p.S318L 0.26 tolerated(0.4) benign(0.037) TCGA-CK-4951-01 5 64859319 64859319 C T PPWD1 Missense_Mutation p.A61V 0.29 tolerated(0.16) benign(0.001) TCGA-CK-4951-01 5 64905171 64905171 G A TRIM23 Missense_Mutation p.R315C 0.34 deleterious(0) possibly_damaging(0.745) TCGA-CK-4951-01 5 666156 666160 TCTTG - TPPP Frame_Shift_Del p.D130Efs*162 0.15 TCGA-CK-4951-01 5 68390015 68390015 C A SLC30A5 5'UTR 0.28 TCGA-CK-4951-01 5 68419094 68419094 G C SLC30A5 Missense_Mutation p.E614Q 0.30 tolerated(1) benign(0.02) TCGA-CK-4951-01 5 68669790 68669790 G A RAD17 Missense_Mutation p.S59N 0.24 tolerated(0.09) benign(0.001) TCGA-CK-4951-01 5 71494545 71494545 C - MAP1B Frame_Shift_Del p.P1789Hfs*34 0.22 TCGA-CK-4951-01 5 71516864 71516864 C T MRPS27 Missense_Mutation p.A373T 0.24 tolerated(0.19) benign(0.161) TCGA-CK-4951-01 5 71648502 71648502 A G PTCD2 Missense_Mutation p.N288S 0.32 tolerated(0.44) benign(0.001) TCGA-CK-4951-01 5 71739970 71739970 G A ZNF366 Silent p.C616C 0.21 TCGA-CK-4951-01 5 71756266 71756266 T A ZNF366 Missense_Mutation p.K353M 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-CK-4951-01 5 73930908 73930908 C T ENC1 Missense_Mutation p.C468Y 0.38 deleterious(0.03) benign(0.016) TCGA-CK-4951-01 5 74069742 74069742 C G NSA2 Missense_Mutation p.T191S 0.11 deleterious(0.01) possibly_damaging(0.883) TCGA-CK-4951-01 5 7414800 7414800 T C ADCY2 Missense_Mutation p.F109L 0.30 tolerated(1) benign(0.004) TCGA-CK-4951-01 5 74325068 74325068 G A GCNT4 Silent p.F265F 0.29 TCGA-CK-4951-01 5 74696092 74696092 G A COL4A3BP Missense_Mutation p.P478S 0.25 tolerated(0.36) benign(0.02) TCGA-CK-4951-01 5 74892805 74892805 T A POLK Missense_Mutation p.Y763N 0.26 tolerated(0.31) benign(0) TCGA-CK-4951-01 5 74893837 74893837 T A POLK Missense_Mutation p.F869L 0.34 deleterious(0.03) possibly_damaging(0.452) TCGA-CK-4951-01 5 75964503 75964503 T C IQGAP2 Intron 0.30 TCGA-CK-4951-01 5 75991310 75991310 G A IQGAP2 Missense_Mutation p.R1342H 0.46 deleterious(0.01) benign(0.135) TCGA-CK-4951-01 5 78365601 78365601 G A BHMT2 5'UTR 0.20 TCGA-CK-4951-01 5 78407649 78407649 C T BHMT 5'UTR 0.17 TCGA-CK-4951-01 5 79616086 79616086 A T SPZ1 Missense_Mutation p.N18Y 0.32 deleterious(0.02) possibly_damaging(0.773) TCGA-CK-4951-01 5 80600617 80600617 G A ZCCHC9 Missense_Mutation p.R14K 0.30 tolerated(1) benign(0.004) TCGA-CK-4951-01 5 82786279 82786279 C T VCAN Silent p.L145L 0.41 TCGA-CK-4951-01 5 82836302 82836302 G T VCAN Nonsense_Mutation p.E2494* 0.29 TCGA-CK-4951-01 5 85588939 85588939 G A NBPF22P Intron 0.23 TCGA-CK-4951-01 5 891803 891805 CTT - BRD9 In_Frame_Del p.K73del 0.28 TCGA-CK-4951-01 5 90070009 90070009 T A GPR98 Missense_Mutation p.S4098T 0.34 benign(0.018) TCGA-CK-4951-01 5 94800372 94800372 T A TTC37 Missense_Mutation p.N1545I 0.26 deleterious(0) probably_damaging(0.972) TCGA-CK-4951-01 5 94839602 94839602 A T TTC37 Missense_Mutation p.S1045T 0.11 tolerated(0.08) benign(0.446) TCGA-CK-4951-01 5 94863853 94863853 A G TTC37 Missense_Mutation p.L333P 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-CK-4951-01 5 94957069 94957069 C T GPR150 Nonsense_Mutation p.R364* 0.18 TCGA-CK-4951-01 5 94957099 94957099 T A GPR150 Missense_Mutation p.C374S 0.39 deleterious(0.01) benign(0.08) TCGA-CK-4951-01 5 96124242 96124242 C T ERAP1 Silent p.P557P 0.25 TCGA-CK-4951-01 5 96358051 96358051 G A LNPEP Nonsense_Mutation p.W808* 0.32 TCGA-CK-4951-01 5 96440961 96440961 C A LIX1 Missense_Mutation p.S139I 0.45 deleterious(0.01) possibly_damaging(0.571) TCGA-CK-4951-01 5 99921963 99921963 G A FAM174A 3'UTR 0.20 TCGA-CK-4951-01 6 100061923 100061923 A T PRDM13 Missense_Mutation p.Y471F 0.38 tolerated(0.07) probably_damaging(0.987) TCGA-CK-4951-01 6 100838122 100838122 A G SIM1 3'UTR 0.42 TCGA-CK-4951-01 6 100841635 100841635 G A SIM1 Missense_Mutation p.S433L 0.16 tolerated(0.17) possibly_damaging(0.866) TCGA-CK-4951-01 6 102483403 102483403 T C GRIK2 Missense_Mutation p.L758P 0.24 deleterious(0.03) probably_damaging(0.993) TCGA-CK-4951-01 6 105526690 105526690 C T LIN28B 3'UTR 0.29 TCGA-CK-4951-01 6 105800891 105800891 C T PREP Missense_Mutation p.R260Q 0.33 tolerated(0.34) benign(0.124) TCGA-CK-4951-01 6 107088379 107088379 G C QRSL1 Missense_Mutation p.K60N 0.29 tolerated(0.17) benign(0.012) TCGA-CK-4951-01 6 107100089 107100089 T A QRSL1 Nonsense_Mutation p.L188* 0.33 TCGA-CK-4951-01 6 107390876 107390876 C T BEND3 Missense_Mutation p.D507N 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-CK-4951-01 6 107780256 107780256 G A PDSS2 Silent p.S78S 0.25 TCGA-CK-4951-01 6 107811913 107811913 G A SOBP Missense_Mutation p.M31I 0.22 tolerated(0.05) possibly_damaging(0.578) TCGA-CK-4951-01 6 108395675 108395675 A T OSTM1 Missense_Mutation p.S61T 0.43 tolerated(0.33) benign(0) TCGA-CK-4951-01 6 108508834 108508834 C T NR2E1 3'UTR 0.36 TCGA-CK-4951-01 6 108985043 108985043 T A FOXO3 Missense_Mutation p.V336D 0.34 deleterious(0) benign(0.004) TCGA-CK-4951-01 6 108985647 108985647 G A FOXO3 Silent p.Q537Q 0.30 TCGA-CK-4951-01 6 109294562 109294562 G A ARMC2 Missense_Mutation p.E817K 0.27 tolerated(0.1) benign(0.279) TCGA-CK-4951-01 6 10959032 10959032 C T SYCP2L Missense_Mutation p.R727C 0.24 deleterious(0.04) possibly_damaging(0.459) TCGA-CK-4951-01 6 109854641 109854641 C T AK9 Missense_Mutation p.R1128Q 0.35 tolerated(0.11) possibly_damaging(0.63) TCGA-CK-4951-01 6 109980478 109980478 C T AK9 Missense_Mutation p.G195R 0.43 tolerated(0.37) benign(0.005) TCGA-CK-4951-01 6 110421610 110421610 T C WASF1 3'UTR 0.30 TCGA-CK-4951-01 6 110942427 110942427 G A CDK19 Silent p.T419T 0.33 TCGA-CK-4951-01 6 11104437 11104437 G A ERVFRD-1 Silent p.T369T 0.36 TCGA-CK-4951-01 6 11104444 11104444 G A ERVFRD-1 Missense_Mutation p.T367M 0.37 tolerated(0.06) benign(0.007) TCGA-CK-4951-01 6 111585089 111585089 G T KIAA1919 Missense_Mutation p.A85S 0.36 tolerated(0.24) benign(0.099) TCGA-CK-4951-01 6 111693948 111693948 G A REV3L Silent p.F1870F 0.32 TCGA-CK-4951-01 6 111694245 111694245 T A REV3L Silent p.L1771L 0.34 TCGA-CK-4951-01 6 11190210 11190210 T C NEDD9 Missense_Mutation p.Y631C 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 6 11190790 11190790 A G NEDD9 Missense_Mutation p.Y438H 0.29 tolerated(0.47) probably_damaging(0.994) TCGA-CK-4951-01 6 112386021 112386021 C A WISP3 Missense_Mutation p.P155H 0.26 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 6 116442369 116442369 G A COL10A1 Missense_Mutation p.P304S 0.50 tolerated(0.05) unknown(0) TCGA-CK-4951-01 6 116837113 116837113 G C FAM26E Missense_Mutation p.E297D 0.17 tolerated(0.14) possibly_damaging(0.604) TCGA-CK-4951-01 6 116949405 116949405 A C RSPH4A Missense_Mutation p.E512A 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 6 116953514 116953514 G T RSPH4A Missense_Mutation p.Q687H 0.18 deleterious(0) unknown(0) TCGA-CK-4951-01 6 117631365 117631365 G C ROS1 Missense_Mutation p.L2105V 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 6 118812982 118812982 G C CEP85L Nonsense_Mutation p.S438* 0.20 TCGA-CK-4951-01 6 12120596 12120596 T A HIVEP1 Missense_Mutation p.S190T 0.28 tolerated(0.12) benign(0.317) TCGA-CK-4951-01 6 12749933 12749933 A T PHACTR1 Missense_Mutation p.D54V 0.35 deleterious_low_confidence(0) benign(0.412) TCGA-CK-4951-01 6 127797409 127797409 T A SOGA3 Nonsense_Mutation p.K588* 0.31 TCGA-CK-4951-01 6 128643159 128643159 A G PTPRK Intron 0.18 TCGA-CK-4951-01 6 129511419 129511419 A G LAMA2 Missense_Mutation p.K513E 0.27 tolerated(0.58) benign(0.012) TCGA-CK-4951-01 6 129513868 129513868 G A LAMA2 Missense_Mutation p.R551H 0.25 tolerated(0.29) benign(0.001) TCGA-CK-4951-01 6 129899527 129899527 T A ARHGAP18 3'UTR 0.44 TCGA-CK-4951-01 6 132021874 132021874 G A OR2A4 Missense_Mutation p.A223V 0.32 deleterious(0.02) benign(0.28) TCGA-CK-4951-01 6 133004256 133004256 A - VNN1 3'UTR 0.27 TCGA-CK-4951-01 6 134210668 134210668 G A TCF21 Missense_Mutation p.E45K 0.34 tolerated(0.34) benign(0.054) TCGA-CK-4951-01 6 135759594 135759594 C T AHI1 Missense_Mutation p.G652D 0.31 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 6 136599183 136599183 T A BCLAF1 Missense_Mutation p.N279I 0.17 deleterious(0) possibly_damaging(0.844) TCGA-CK-4951-01 6 13711182 13711182 G A RANBP9 Missense_Mutation p.R186W 0.32 deleterious(0) probably_damaging(0.973) TCGA-CK-4951-01 6 137243569 137243569 G A SLC35D3 Translation_Start_Site p.M1? 0.44 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-CK-4951-01 6 137814903 137814903 G A OLIG3 Silent p.L135L 0.37 TCGA-CK-4951-01 6 138584233 138584233 C T KIAA1244 Missense_Mutation p.S538L 0.29 tolerated(0.12) benign(0.017) TCGA-CK-4951-01 6 138644882 138644882 C T KIAA1244 Missense_Mutation p.A1614V 0.20 deleterious(0.03) possibly_damaging(0.625) TCGA-CK-4951-01 6 138745485 138745485 C T NHSL1 Silent p.Q1522Q 0.22 TCGA-CK-4951-01 6 138745492 138745492 C T NHSL1 Missense_Mutation p.R1520Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 6 138745566 138745566 G C NHSL1 Silent p.S1495S 0.30 TCGA-CK-4951-01 6 139186200 139186200 G A ECT2L Silent p.K453K 0.18 TCGA-CK-4951-01 6 1394953 1394953 T A FOXF2 Missense_Mutation p.H398Q 0.10 deleterious(0.03) benign(0.015) TCGA-CK-4951-01 6 139576713 139576713 G A TXLNB Silent p.V355V 0.32 TCGA-CK-4951-01 6 139583783 139583783 C T TXLNB Missense_Mutation p.C272Y 0.30 tolerated(0.05) probably_damaging(0.999) TCGA-CK-4951-01 6 139609654 139609654 T C TXLNB Missense_Mutation p.N128S 0.30 tolerated(0.38) benign(0.009) TCGA-CK-4951-01 6 142691863 142691863 C T GPR126 Silent p.V334V 0.27 TCGA-CK-4951-01 6 143828433 143828433 G A FUCA2 Missense_Mutation p.A118V 0.39 deleterious(0.03) possibly_damaging(0.77) TCGA-CK-4951-01 6 144820460 144820460 C T UTRN Missense_Mutation p.A1554V 0.37 tolerated(0.3) benign(0.392) TCGA-CK-4951-01 6 144837436 144837436 C T UTRN Silent p.F1772F 0.26 TCGA-CK-4951-01 6 146264681 146264681 A G SHPRH Silent p.V612V 0.11 TCGA-CK-4951-01 6 149342500 149342500 G A UST Missense_Mutation p.V274M 0.29 deleterious(0.03) probably_damaging(0.934) TCGA-CK-4951-01 6 149691168 149691168 T - TAB2 Frame_Shift_Del p.L13Yfs*48 0.28 TCGA-CK-4951-01 6 149838578 149838578 A T PPIL4 Missense_Mutation p.Y331N 0.24 tolerated(0.07) possibly_damaging(0.738) TCGA-CK-4951-01 6 150174173 150174173 G A LRP11 Missense_Mutation p.A246V 0.10 deleterious(0.04) benign(0.002) TCGA-CK-4951-01 6 150290001 150290001 C T ULBP1 Missense_Mutation p.P115L 0.34 tolerated(0.28) possibly_damaging(0.474) TCGA-CK-4951-01 6 151265648 151265648 C G MTHFD1L Missense_Mutation p.I489M 0.22 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 6 151773599 151773599 C A C6orf211 5'UTR 0.50 TCGA-CK-4951-01 6 152497623 152497623 T C SYNE1 Missense_Mutation p.K7845E 0.31 benign(0.099) TCGA-CK-4951-01 6 152510384 152510384 T A SYNE1 Intron 0.40 TCGA-CK-4951-01 6 152527359 152527359 T C SYNE1 Missense_Mutation p.K7655E 0.09 benign(0.028) TCGA-CK-4951-01 6 154744079 154744079 G A CNKSR3 Silent p.D256D 0.32 TCGA-CK-4951-01 6 154762455 154762455 A G CNKSR3 Missense_Mutation p.C160R 0.17 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 6 157099966 157099966 C T ARID1B Silent p.Y301Y 0.41 TCGA-CK-4951-01 6 157522035 157522035 G A ARID1B Missense_Mutation p.G1436E 0.28 probably_damaging(0.928) TCGA-CK-4951-01 6 157527864 157527864 C T ARID1B Silent p.G1863G 0.44 TCGA-CK-4951-01 6 158342687 158342687 T A SNX9 Missense_Mutation p.D358E 0.30 deleterious(0) benign(0.247) TCGA-CK-4951-01 6 158449875 158449875 C G SYNJ2 Missense_Mutation p.A101G 0.24 tolerated(0.28) benign(0.012) TCGA-CK-4951-01 6 158492720 158492720 G T SYNJ2 Missense_Mutation p.S676I 0.31 deleterious(0) probably_damaging(0.936) TCGA-CK-4951-01 6 158902277 158902277 G A TULP4 Missense_Mutation p.R481Q 0.47 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 6 158902282 158902282 G A TULP4 Missense_Mutation p.E483K 0.48 deleterious(0.03) probably_damaging(0.991) TCGA-CK-4951-01 6 158914603 158914603 A T TULP4 Splice_Site p.X544_splice 0.26 TCGA-CK-4951-01 6 158915821 158915821 G T TULP4 Nonsense_Mutation p.G605* 0.28 TCGA-CK-4951-01 6 158922716 158922716 G A TULP4 Missense_Mutation p.G674E 0.26 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CK-4951-01 6 158923185 158923185 G C TULP4 Missense_Mutation p.K830N 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CK-4951-01 6 159188107 159188107 G A EZR Silent p.L534L 0.26 TCGA-CK-4951-01 6 159206428 159206428 G A EZR Missense_Mutation p.S127F 0.33 deleterious(0) probably_damaging(0.913) TCGA-CK-4951-01 6 159653414 159653414 G A FNDC1 Missense_Mutation p.A624T 0.29 tolerated_low_confidence(1) unknown(0) TCGA-CK-4951-01 6 159655099 159655099 G A FNDC1 Silent p.A1185A 0.37 TCGA-CK-4951-01 6 159692369 159692369 C T FNDC1 Silent p.R1860R 0.32 TCGA-CK-4951-01 6 160448312 160448312 C T IGF2R Missense_Mutation p.P248S 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-CK-4951-01 6 160484463 160484463 G A IGF2R Silent p.V1229V 0.27 TCGA-CK-4951-01 6 160492969 160492969 G A IGF2R Missense_Mutation p.V1491M 0.32 deleterious(0.01) possibly_damaging(0.87) TCGA-CK-4951-01 6 160523560 160523560 T C IGF2R Silent p.F2284F 0.25 TCGA-CK-4951-01 6 160664774 160664774 C A SLC22A2 Missense_Mutation p.G370V 0.42 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 6 160872027 160872027 G A SLC22A3 Splice_Site p.X537_splice 0.32 TCGA-CK-4951-01 6 160998267 160998267 C T LPA Missense_Mutation p.R1511Q 0.34 deleterious(0.04) probably_damaging(0.971) TCGA-CK-4951-01 6 161152918 161152918 A - PLG Frame_Shift_Del p.N529Ifs*10 0.15 TCGA-CK-4951-01 6 1613954 1613954 T C FOXC1 3'UTR 0.34 TCGA-CK-4951-01 6 1624440 1624440 G A GMDS Silent p.A361A 0.36 TCGA-CK-4951-01 6 163985687 163985687 T - QKI Intron 0.41 TCGA-CK-4951-01 6 166778914 166778914 T C MPC1 3'UTR 0.47 TCGA-CK-4951-01 6 167416821 167416821 T - FGFR1OP Intron 0.87 TCGA-CK-4951-01 6 167754337 167754337 G A TTLL2 Missense_Mutation p.G317S 0.34 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 6 169637882 169637882 C G THBS2 Missense_Mutation p.G380R 0.50 tolerated_low_confidence(0.09) benign(0.006) TCGA-CK-4951-01 6 169649012 169649012 G A THBS2 Missense_Mutation p.R37C 0.24 deleterious(0) probably_damaging(0.953) TCGA-CK-4951-01 6 170052061 170052061 A T WDR27 Missense_Mutation p.S482R 0.23 tolerated(0.06) possibly_damaging(0.509) TCGA-CK-4951-01 6 170627141 170627141 C T FAM120B Silent p.D221D 0.35 TCGA-CK-4951-01 6 17760949 17760949 C T KIF13A 3'Flank 0.44 TCGA-CK-4951-01 6 19838171 19838171 G A ID4 Silent p.L62L 0.24 TCGA-CK-4951-01 6 2116003 2116003 A C GMDS Splice_Site p.X115_splice 0.28 TCGA-CK-4951-01 6 22570176 22570176 C T HDGFL1 Silent p.G124G 0.18 TCGA-CK-4951-01 6 24653308 24653308 C T TDP2 Missense_Mutation p.R237Q 0.33 deleterious(0.03) probably_damaging(0.989) TCGA-CK-4951-01 6 26020826 26020826 A - HIST1H3A Frame_Shift_Del p.K38Sfs*53 0.08 TCGA-CK-4951-01 6 26021130 26021130 T A HIST1H3A 3'UTR 0.30 TCGA-CK-4951-01 6 26021167 26021167 T C HIST1H3A 3'UTR 0.29 TCGA-CK-4951-01 6 26021995 26021995 T A HIST1H4A Missense_Mutation p.I30N 0.30 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 6 26184256 26184256 C T HIST1H2BE Missense_Mutation p.A78V 0.37 deleterious_low_confidence(0.01) benign(0.352) TCGA-CK-4951-01 6 26285705 26285705 C T HIST1H4H Missense_Mutation p.G8E 0.27 deleterious_low_confidence(0) unknown(0) TCGA-CK-4951-01 6 26373289 26373289 G A BTN3A2 Missense_Mutation p.G294R 0.36 tolerated(0.13) benign(0.372) TCGA-CK-4951-01 6 26405755 26405755 C - BTN3A1 5'UTR 0.19 TCGA-CK-4951-01 6 26637561 26637561 C T ZNF322 3'UTR 0.38 TCGA-CK-4951-01 6 28056567 28056567 C T ZNF165 Silent p.L259L 0.34 TCGA-CK-4951-01 6 28134447 28134447 G A ZNF192P1 RNA 0.50 TCGA-CK-4951-01 6 29599175 29599175 C T GABBR1 Missense_Mutation p.C96Y 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-4951-01 6 29977338 29977338 T A ZNRD1-AS1 Intron 0.08 TCGA-CK-4951-01 6 3015773 3015773 T C NQO2 Missense_Mutation p.Y105H 0.24 tolerated(0.11) probably_damaging(0.997) TCGA-CK-4951-01 6 30303651 30303651 C T TRIM39 Nonsense_Mutation p.R227* 0.33 TCGA-CK-4951-01 6 30308071 30308071 G A TRIM39 Missense_Mutation p.G276S 0.23 tolerated_low_confidence(0.53) benign(0) TCGA-CK-4951-01 6 30522584 30522584 G A GNL1 Missense_Mutation p.A162V 0.15 tolerated(0.11) benign(0.045) TCGA-CK-4951-01 6 30525111 30525111 C T PRR3 5'UTR 0.36 TCGA-CK-4951-01 6 30553416 30553416 C T ABCF1 Silent p.I519I 0.35 TCGA-CK-4951-01 6 30569950 30569950 C A PPP1R10 Missense_Mutation p.G826C 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-CK-4951-01 6 30570128 30570128 T A PPP1R10 Silent p.G766G 0.32 TCGA-CK-4951-01 6 30594645 30594645 G A ATAT1 5'Flank 0.14 TCGA-CK-4951-01 6 30629745 30629745 G A DHX16 Intron 0.36 TCGA-CK-4951-01 6 30679808 30679808 G A MDC1 Silent p.D637D 0.34 TCGA-CK-4951-01 6 30697912 30697912 C A FLOT1 Missense_Mutation p.V381L 0.15 tolerated(0.63) benign(0.077) TCGA-CK-4951-01 6 30711679 30711679 T C IER3 3'UTR 0.17 TCGA-CK-4951-01 6 30883607 30883607 G A VARS2 Missense_Mutation p.A187T 0.38 deleterious(0) probably_damaging(0.923) TCGA-CK-4951-01 6 30894071 30894071 C T VARS2 3'UTR 0.19 TCGA-CK-4951-01 6 30917596 30917596 A G DPCR1 Missense_Mutation p.N452S 0.30 tolerated(0.08) unknown(0) TCGA-CK-4951-01 6 31079895 31079895 C T C6orf15 Missense_Mutation p.V81M 0.28 tolerated(0.25) benign(0) TCGA-CK-4951-01 6 31111043 31111043 A G CCHCR1 Missense_Mutation p.M772T 0.19 deleterious(0) possibly_damaging(0.888) TCGA-CK-4951-01 6 31132500 31132501 - A POU5F1 Frame_Shift_Ins p.G321Wfs*21 0.22 TCGA-CK-4951-01 6 31323265 31323265 G A HLA-B Nonsense_Mutation p.Q242* 0.26 TCGA-CK-4951-01 6 31324556 31324556 C T HLA-B Nonsense_Mutation p.W84* 0.31 TCGA-CK-4951-01 6 31592120 31592120 C - PRRC2A Frame_Shift_Del p.P126Qfs*14 0.24 TCGA-CK-4951-01 6 31634660 31634660 G A CSNK2B-LY6G5B-1181 Missense_Mutation p.G18S 0.37 deleterious(0.02) probably_damaging(1) TCGA-CK-4951-01 6 31696711 31696711 G A DDAH2 Silent p.G76G 0.18 TCGA-CK-4951-01 6 31733429 31733429 C T VWA7 Missense_Mutation p.S873N 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-CK-4951-01 6 31743788 31743788 G A VWA7 Missense_Mutation p.H156Y 0.17 tolerated(1) benign(0) TCGA-CK-4951-01 6 31743821 31743821 G A VWA7 Missense_Mutation p.R145W 0.19 deleterious(0.02) benign(0.01) TCGA-CK-4951-01 6 31851727 31851727 C T EHMT2 Silent p.R924R 0.39 TCGA-CK-4951-01 6 31864887 31864887 C - EHMT2 Intron 0.55 TCGA-CK-4951-01 6 31869082 31869082 T C ZBTB12 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0.01) benign(0.019) TCGA-CK-4951-01 6 31869101 31869101 C T ZBTB12 Intron 0.47 TCGA-CK-4951-01 6 31914178 31914178 C T CFB Silent p.A533A 0.34 TCGA-CK-4951-01 6 31937178 31937178 A G SKIV2L Missense_Mutation p.Y1174C 0.06 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 6 31964305 31964305 C G C4A Missense_Mutation p.L1202V 0.17 deleterious(0) possibly_damaging(0.674) TCGA-CK-4951-01 6 32008887 32008887 C T CYP21A2 Silent p.A488A 0.14 TCGA-CK-4951-01 6 32008899 32008899 C G CYP21A2 Silent p.G492G 0.18 TCGA-CK-4951-01 6 32008982 32008982 C T CYP21A2 3'UTR 0.22 TCGA-CK-4951-01 6 32036176 32036176 C T TNXB Missense_Mutation p.G2071R 0.35 probably_damaging(1) TCGA-CK-4951-01 6 32056618 32056618 A T TNXB Missense_Mutation p.V908D 0.18 probably_damaging(0.991) TCGA-CK-4951-01 6 32056824 32056824 C T TNXB Missense_Mutation p.M839I 0.22 benign(0.01) TCGA-CK-4951-01 6 32064075 32064075 T G TNXB Missense_Mutation p.T519P 0.45 probably_damaging(0.986) TCGA-CK-4951-01 6 32096499 32096499 A T FKBPL 3'UTR 0.34 TCGA-CK-4951-01 6 32147863 32147863 C A RNF5 Silent p.T135T 0.33 TCGA-CK-4951-01 6 32180402 32180402 A T NOTCH4 Silent p.T843T 0.10 TCGA-CK-4951-01 6 32821143 32821143 C T TAP1 Missense_Mutation p.G151S 0.32 tolerated(0.12) possibly_damaging(0.798) TCGA-CK-4951-01 6 32821381 32821381 C T TAP1 Silent p.G71G 0.29 TCGA-CK-4951-01 6 33138381 33138381 G A COL11A2 Missense_Mutation p.P1075S 0.31 possibly_damaging(0.803) TCGA-CK-4951-01 6 33156217 33156217 G A COL11A2 Silent p.P176P 0.29 TCGA-CK-4951-01 6 33175620 33175620 G A SLC39A7 3'Flank 0.31 TCGA-CK-4951-01 6 33177710 33177710 C T RING1 Silent p.T86T 0.32 TCGA-CK-4951-01 6 33180076 33180076 C T RING1 Missense_Mutation p.T374M 0.30 tolerated(0.09) unknown(0) TCGA-CK-4951-01 6 33246199 33246199 G C B3GALT4 Missense_Mutation p.D335H 0.11 deleterious(0.02) possibly_damaging(0.706) TCGA-CK-4951-01 6 33258169 33258169 G A PFDN6 Missense_Mutation p.E68K 0.34 deleterious(0.01) possibly_damaging(0.756) TCGA-CK-4951-01 6 33261777 33261777 G A RGL2 Intron 0.22 TCGA-CK-4951-01 6 33264039 33264039 G A RGL2 Silent p.A178A 0.33 TCGA-CK-4951-01 6 33272192 33272192 C T TAPBP Silent p.G364G 0.34 TCGA-CK-4951-01 6 33288198 33288198 G A DAXX Missense_Mutation p.H404Y 0.30 tolerated(0.46) benign(0.011) TCGA-CK-4951-01 6 33373995 33373995 C G KIFC1 Missense_Mutation p.A520G 0.47 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 6 33424532 33424532 A G ZBTB9 3'UTR 0.40 TCGA-CK-4951-01 6 33644629 33644629 A T ITPR3 Nonsense_Mutation p.K1123* 0.28 TCGA-CK-4951-01 6 34614396 34614396 T A C6orf106 Missense_Mutation p.T165S 0.33 tolerated(0.2) benign(0.026) TCGA-CK-4951-01 6 35248885 35248885 C T ZNF76 5'UTR 0.25 TCGA-CK-4951-01 6 35437189 35437189 G C RPL10A Missense_Mutation p.V65L 0.55 tolerated(0.1) benign(0.007) TCGA-CK-4951-01 6 35471616 35471616 G A TULP1 Silent p.L374L 0.30 TCGA-CK-4951-01 6 35480443 35480443 G A TULP1 Silent p.S24S 0.24 TCGA-CK-4951-01 6 35922940 35922940 C T SLC26A8 Missense_Mutation p.V741I 0.38 tolerated(0.49) benign(0.079) TCGA-CK-4951-01 6 35995890 35995890 G A MAPK14 5'UTR 0.30 TCGA-CK-4951-01 6 36168251 36168251 G A BRPF3 Missense_Mutation p.R51H 0.21 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 6 36181729 36181729 C - BRPF3 Frame_Shift_Del p.P854Rfs*6 0.19 TCGA-CK-4951-01 6 36294300 36294300 G A C6orf222 Silent p.I341I 0.40 TCGA-CK-4951-01 6 36294301 36294301 A T C6orf222 Missense_Mutation p.I341N 0.41 tolerated(0.09) benign(0.207) TCGA-CK-4951-01 6 36724026 36724026 C T CPNE5 Missense_Mutation p.G302D 0.24 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 6 36993594 36993594 C T FGD2 Silent p.Y495Y 0.26 TCGA-CK-4951-01 6 36993649 36993649 T C FGD2 Missense_Mutation p.Y514H 0.27 deleterious(0.02) probably_damaging(0.966) TCGA-CK-4951-01 6 3850456 3850456 G C FAM50B Missense_Mutation p.R137S 0.21 tolerated(0.72) benign(0) TCGA-CK-4951-01 6 3851349 3851349 G A FAM50B 3'UTR 0.23 TCGA-CK-4951-01 6 38652172 38652172 T C GLO1 Missense_Mutation p.K96E 0.17 tolerated(0.46) benign(0.019) TCGA-CK-4951-01 6 39053697 39053697 C T GLP1R Missense_Mutation p.R414W 0.33 tolerated(0.12) benign(0.027) TCGA-CK-4951-01 6 39835428 39835428 C T DAAM2 Missense_Mutation p.R191W 0.20 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 6 39876831 39876831 C T MOCS1 Missense_Mutation p.G384S 0.32 deleterious(0) probably_damaging(0.918) TCGA-CK-4951-01 6 41065234 41065234 G T NFYA 3'UTR 0.36 TCGA-CK-4951-01 6 4125593 4125593 C T ECI2 Missense_Mutation p.G229D 0.65 tolerated(0.86) benign(0.012) TCGA-CK-4951-01 6 41617571 41617571 G A MDFI Silent p.Q158Q 0.28 TCGA-CK-4951-01 6 41621072 41621072 G A MDFI Missense_Mutation p.C167Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 6 41754045 41754045 G A PRICKLE4 Silent p.G254G 0.24 TCGA-CK-4951-01 6 41884566 41884566 G A MED20 Silent p.D42D 0.15 TCGA-CK-4951-01 6 41900264 41900264 G A BYSL Nonsense_Mutation p.W378* 0.27 TCGA-CK-4951-01 6 41904361 41904361 C T CCND3 Missense_Mutation p.G216D 0.23 tolerated(0.52) benign(0.002) TCGA-CK-4951-01 6 41904368 41904368 C T CCND3 Missense_Mutation p.G214S 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-CK-4951-01 6 42236871 42236871 T C TRERF1 Missense_Mutation p.Q153R 0.26 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-CK-4951-01 6 42629954 42629954 C T UBR2 Silent p.L1159L 0.39 TCGA-CK-4951-01 6 42828004 42828004 C T GLTSCR1L Silent p.D753D 0.19 TCGA-CK-4951-01 6 42985069 42985069 C T KLHDC3 Missense_Mutation p.H47Y 0.35 deleterious(0.02) possibly_damaging(0.861) TCGA-CK-4951-01 6 42988523 42988523 C G KLHDC3 3'UTR 0.39 TCGA-CK-4951-01 6 42988532 42988532 C T KLHDC3 3'UTR 0.39 TCGA-CK-4951-01 6 43030786 43030786 A G KLC4 Silent p.L148L 0.32 TCGA-CK-4951-01 6 43107173 43107173 C - PTK7 Frame_Shift_Del p.P518Hfs*39 0.28 TCGA-CK-4951-01 6 43174104 43174104 G A CUL9 Missense_Mutation p.D1690N 0.22 tolerated(0.09) probably_damaging(0.989) TCGA-CK-4951-01 6 43188560 43188560 G A CUL9 Missense_Mutation p.D2167N 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-CK-4951-01 6 43191895 43191895 G A CUL9 Missense_Mutation p.M2449I 0.30 deleterious(0.03) benign(0) TCGA-CK-4951-01 6 43214378 43214378 A T TTBK1 5'UTR 0.31 TCGA-CK-4951-01 6 43250608 43250608 C T TTBK1 Silent p.F710F 0.37 TCGA-CK-4951-01 6 43251080 43251080 C G TTBK1 Missense_Mutation p.Q868E 0.33 probably_damaging(0.93) TCGA-CK-4951-01 6 43269338 43269338 C T SLC22A7 Silent p.A323A 0.23 TCGA-CK-4951-01 6 43323163 43323163 C A ZNF318 Missense_Mutation p.D637Y 0.30 probably_damaging(1) TCGA-CK-4951-01 6 43515349 43515349 G A XPO5 Missense_Mutation p.A719V 0.38 deleterious(0.02) benign(0.196) TCGA-CK-4951-01 6 43593992 43593992 C T GTPBP2 Silent p.S123S 0.28 TCGA-CK-4951-01 6 43603620 43603620 C T MAD2L1BP Intron 0.36 TCGA-CK-4951-01 6 43639573 43639573 G A MRPS18A Missense_Mutation p.R173C 0.19 deleterious(0.02) benign(0) TCGA-CK-4951-01 6 43752370 43752370 G A VEGFA 3'Flank 0.35 TCGA-CK-4951-01 6 44117637 44117637 G A TMEM63B Nonsense_Mutation p.W485* 0.32 TCGA-CK-4951-01 6 44144617 44144617 G A CAPN11 Silent p.E373E 0.26 TCGA-CK-4951-01 6 44243282 44243282 T A TMEM151B Missense_Mutation p.F240Y 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-CK-4951-01 6 44250098 44250098 G A TCTE1 Missense_Mutation p.P349S 0.26 tolerated(0.82) benign(0.023) TCGA-CK-4951-01 6 46826280 46826280 A G GPR116 Silent p.H1120H 0.12 TCGA-CK-4951-01 6 49419354 49419354 T C MUT Missense_Mutation p.H386R 0.23 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CK-4951-01 6 5086671 5086671 G A PPP1R3G Missense_Mutation p.A318T 0.44 tolerated_low_confidence(0.18) benign(0.02) TCGA-CK-4951-01 6 52878508 52878508 C T ICK Silent p.K368K 0.17 TCGA-CK-4951-01 6 56035825 56035825 G A COL21A1 Nonsense_Mutation p.Q248* 0.32 TCGA-CK-4951-01 6 56035826 56035826 T A COL21A1 Silent p.I247I 0.31 TCGA-CK-4951-01 6 56918136 56918136 A T KIAA1586 Missense_Mutation p.N280I 0.30 tolerated(0.12) benign(0.003) TCGA-CK-4951-01 6 56997840 56997840 G A ZNF451 Missense_Mutation p.G142E 0.13 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 6 62390954 62390954 A G KHDRBS2 Missense_Mutation p.W322R 0.26 deleterious(0.01) possibly_damaging(0.459) TCGA-CK-4951-01 6 64408487 64408487 A - PHF3 Frame_Shift_Del p.N993Tfs*9 0.24 TCGA-CK-4951-01 6 71235588 71235588 T C FAM135A Missense_Mutation p.V934A 0.14 tolerated(0.12) benign(0.003) TCGA-CK-4951-01 6 7240699 7240699 C T RREB1 Silent p.C1279C 0.43 TCGA-CK-4951-01 6 7247280 7247280 G A RREB1 Missense_Mutation p.E1533K 0.33 tolerated(0.06) possibly_damaging(0.618) TCGA-CK-4951-01 6 73904624 73904624 G A KCNQ5 Silent p.R781R 0.38 TCGA-CK-4951-01 6 7404253 7404253 G A RIOK1 Missense_Mutation p.D283N 0.29 tolerated(0.28) benign(0.068) TCGA-CK-4951-01 6 7410627 7410627 A T RIOK1 Missense_Mutation p.E404D 0.08 deleterious(0.03) benign(0.341) TCGA-CK-4951-01 6 74111602 74111602 G A DDX43 Missense_Mutation p.V153I 0.28 tolerated(0.45) benign(0.006) TCGA-CK-4951-01 6 74161669 74161669 G A MB21D1 Missense_Mutation p.A79V 0.25 tolerated(0.07) benign(0.012) TCGA-CK-4951-01 6 74191952 74191952 C T MTO1 Missense_Mutation p.R524W 0.30 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 6 7555964 7555964 A T DSP Missense_Mutation p.M62L 0.38 benign(0.001) TCGA-CK-4951-01 6 76412414 76412414 A T SENP6 Missense_Mutation p.Y781F 0.31 tolerated(0.23) probably_damaging(0.961) TCGA-CK-4951-01 6 76572385 76572385 A G MYO6 Missense_Mutation p.D540G 0.38 tolerated(0.34) unknown(0) TCGA-CK-4951-01 6 76751628 76751628 C G IMPG1 Missense_Mutation p.A95P 0.25 deleterious(0.04) benign(0.086) TCGA-CK-4951-01 6 7904857 7904857 G A TXNDC5 Silent p.C121C 0.33 TCGA-CK-4951-01 6 80626118 80626118 A T ELOVL4 3'UTR 0.29 TCGA-CK-4951-01 6 83878867 83878867 A G PGM3 3'UTR 0.58 TCGA-CK-4951-01 6 8421012 8421012 A T SLC35B3 Silent p.L208L 0.37 TCGA-CK-4951-01 6 84904718 84904718 C T KIAA1009 Missense_Mutation p.G304E 0.34 tolerated(0.28) benign(0.356) TCGA-CK-4951-01 6 86324704 86324704 G A SYNCRIP Missense_Mutation p.R548C 0.34 tolerated(0.13) unknown(0) TCGA-CK-4951-01 6 87725847 87725847 C - HTR1E Frame_Shift_Del p.F268Sfs*5 0.29 TCGA-CK-4951-01 6 87965637 87965637 T A ZNF292 Missense_Mutation p.Y764N 0.34 tolerated(1) possibly_damaging(0.573) TCGA-CK-4951-01 6 87965659 87965659 G A ZNF292 Missense_Mutation p.R771Q 0.37 deleterious(0) probably_damaging(0.977) TCGA-CK-4951-01 6 87994274 87994274 G C GJB7 Silent p.G119G 0.32 TCGA-CK-4951-01 6 89907880 89907880 G A GABRR1 Missense_Mutation p.T144M 0.29 deleterious(0) possibly_damaging(0.833) TCGA-CK-4951-01 6 89974203 89974203 C T GABRR2 Silent p.S338S 0.46 TCGA-CK-4951-01 6 90393614 90393614 T C MDN1 Missense_Mutation p.K3947E 0.10 possibly_damaging(0.77) TCGA-CK-4951-01 6 90424302 90424302 G A MDN1 Silent p.I2343I 0.32 TCGA-CK-4951-01 6 90434985 90434985 T C MDN1 Missense_Mutation p.Q1868R 0.22 probably_damaging(0.997) TCGA-CK-4951-01 6 91266322 91266322 C - MAP3K7 Frame_Shift_Del p.T169Qfs*3 0.20 TCGA-CK-4951-01 6 96654334 96654334 T - FUT9 3'UTR 0.48 TCGA-CK-4951-01 6 96660382 96660382 T A FUT9 3'UTR 0.25 TCGA-CK-4951-01 6 96973184 96973184 G A UFL1 Silent p.V88V 0.27 TCGA-CK-4951-01 6 99729243 99729243 A G FAXC Missense_Mutation p.Y343H 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-CK-4951-01 6 99819385 99819385 T C COQ3 Missense_Mutation p.I270V 0.27 tolerated(0.23) benign(0.02) TCGA-CK-4951-01 7 100030563 100030563 G A MEPCE Missense_Mutation p.D565N 0.36 deleterious(0) benign(0.052) TCGA-CK-4951-01 7 100086917 100086917 C A NYAP1 Missense_Mutation p.L525I 0.21 tolerated(0.23) probably_damaging(0.961) TCGA-CK-4951-01 7 100087038 100087038 A G NYAP1 Missense_Mutation p.E565G 0.14 deleterious(0) possibly_damaging(0.447) TCGA-CK-4951-01 7 100088266 100088266 C T NYAP1 Missense_Mutation p.A691V 0.28 deleterious(0.04) possibly_damaging(0.839) TCGA-CK-4951-01 7 100172528 100172528 G A LRCH4 3'UTR 0.25 TCGA-CK-4951-01 7 100201723 100201723 C T PCOLCE Missense_Mutation p.R116W 0.40 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 100212641 100212641 C T MOSPD3 Silent p.A221A 0.29 TCGA-CK-4951-01 7 100212812 100212812 G A MOSPD3 3'UTR 0.31 TCGA-CK-4951-01 7 100247660 100247660 C T ACTL6B Splice_Site p.X156_splice 0.48 TCGA-CK-4951-01 7 100276164 100276164 C T GNB2 Silent p.S281S 0.28 TCGA-CK-4951-01 7 100318586 100318586 C T EPO 5'UTR 0.25 TCGA-CK-4951-01 7 100349857 100349857 C T ZAN Missense_Mutation p.P710L 0.30 probably_damaging(0.97) TCGA-CK-4951-01 7 100402814 100402814 G A EPHB4 Silent p.F936F 0.28 TCGA-CK-4951-01 7 100417895 100417895 G A EPHB4 Missense_Mutation p.P278S 0.44 tolerated(0.77) benign(0.079) TCGA-CK-4951-01 7 100693879 100693879 G A MUC17 Silent p.V4279V 0.26 TCGA-CK-4951-01 7 100806989 100806989 C A VGF Missense_Mutation p.G379V 0.36 tolerated_low_confidence(0.1) unknown(0) TCGA-CK-4951-01 7 100856443 100856443 C T PLOD3 Missense_Mutation p.R241Q 0.29 tolerated(0.26) benign(0.284) TCGA-CK-4951-01 7 100859261 100859261 G A PLOD3 Silent p.R181R 0.30 TCGA-CK-4951-01 7 100875692 100875692 T G CLDN15 Nonstop_Mutation p.*229Sext*26 0.24 TCGA-CK-4951-01 7 100877583 100877583 C T CLDN15 Missense_Mutation p.A120T 0.50 deleterious(0) possibly_damaging(0.842) TCGA-CK-4951-01 7 100880895 100880895 C T CLDN15 5'UTR 0.17 TCGA-CK-4951-01 7 101821800 101821800 G A CUX1 Missense_Mutation p.A305T 0.33 deleterious(0.01) unknown(0) TCGA-CK-4951-01 7 101918611 101918611 G A CUX1 Missense_Mutation p.R513Q 0.24 deleterious(0.01) possibly_damaging(0.852) TCGA-CK-4951-01 7 102105170 102105170 C T ALKBH4 Silent p.L38L 0.42 TCGA-CK-4951-01 7 102109419 102109419 C T LRWD1 Missense_Mutation p.R380C 0.09 deleterious(0) probably_damaging(0.944) TCGA-CK-4951-01 7 102113001 102113001 G A LRWD1 Silent p.A545A 0.50 TCGA-CK-4951-01 7 102518023 102518023 T C FBXL13 Missense_Mutation p.Y509C 0.36 deleterious(0) probably_damaging(0.971) TCGA-CK-4951-01 7 102579890 102579890 G A LRRC17 Silent p.V262V 0.15 TCGA-CK-4951-01 7 104719314 104719314 C T KMT2E Silent p.F384F 0.33 TCGA-CK-4951-01 7 105098283 105098283 G A PUS7 Missense_Mutation p.T647I 0.25 deleterious(0) probably_damaging(0.973) TCGA-CK-4951-01 7 105183086 105183086 G T RINT1 Nonsense_Mutation p.E169* 0.23 TCGA-CK-4951-01 7 106509402 106509402 C T PIK3CG Silent p.L466L 0.34 TCGA-CK-4951-01 7 106523505 106523505 C T PIK3CG Missense_Mutation p.T886M 0.33 deleterious(0.02) possibly_damaging(0.594) TCGA-CK-4951-01 7 107342449 107342449 G C SLC26A4 Missense_Mutation p.D661H 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 107545404 107545404 G A DLD Missense_Mutation p.M113I 0.20 tolerated(0.31) benign(0) TCGA-CK-4951-01 7 107569982 107569982 T A LAMB1 Missense_Mutation p.L1540F 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 7 1097804 1097804 C T GPR146 Missense_Mutation p.T218M 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-CK-4951-01 7 112461659 112461659 A - C7orf60 3'UTR 0.35 TCGA-CK-4951-01 7 1131616 1131616 C A GPER1 Missense_Mutation p.N84K 0.22 deleterious(0.04) probably_damaging(1) TCGA-CK-4951-01 7 113518172 113518172 C T PPP1R3A Missense_Mutation p.C992Y 0.29 tolerated(1) benign(0.101) TCGA-CK-4951-01 7 11485868 11485868 T C THSD7A Missense_Mutation p.N962D 0.24 tolerated(0.27) benign(0.071) TCGA-CK-4951-01 7 116371800 116371800 G A MET Missense_Mutation p.V427I 0.38 tolerated(0.24) benign(0.023) TCGA-CK-4951-01 7 117375404 117375404 A T CTTNBP2 Missense_Mutation p.S1203T 0.08 tolerated(0.12) benign(0.097) TCGA-CK-4951-01 7 117431879 117431879 G A CTTNBP2 Silent p.N457N 0.35 TCGA-CK-4951-01 7 117874760 117874760 A G ANKRD7 Silent p.V100V 0.35 TCGA-CK-4951-01 7 119915140 119915140 G A KCND2 Missense_Mutation p.A152T 0.33 tolerated(0.46) benign(0.012) TCGA-CK-4951-01 7 122033549 122033549 G A CADPS2 Missense_Mutation p.S945F 0.30 deleterious(0) possibly_damaging(0.695) TCGA-CK-4951-01 7 122303585 122303585 C T CADPS2 Silent p.Q164Q 0.40 TCGA-CK-4951-01 7 122809384 122809384 G A SLC13A1 Missense_Mutation p.T124M 0.17 tolerated(1) benign(0.098) TCGA-CK-4951-01 7 123092824 123092824 A G IQUB Silent p.I783I 0.26 TCGA-CK-4951-01 7 123264658 123264658 C G ASB15 Missense_Mutation p.L163V 0.23 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 124386875 124386875 C T GPR37 Missense_Mutation p.A516T 0.28 tolerated(0.09) benign(0.326) TCGA-CK-4951-01 7 12729901 12729901 T A ARL4A 3'UTR 0.33 TCGA-CK-4951-01 7 127714676 127714676 C T SND1 Silent p.A634A 0.19 TCGA-CK-4951-01 7 127727012 127727012 G A SND1 Missense_Mutation p.R776H 0.39 deleterious(0.03) benign(0.057) TCGA-CK-4951-01 7 127732055 127732055 G A SND1 Nonsense_Mutation p.W893* 0.41 TCGA-CK-4951-01 7 128481545 128481545 G A FLNC Missense_Mutation p.C682Y 0.19 tolerated(0.06) possibly_damaging(0.811) TCGA-CK-4951-01 7 128482643 128482643 G A FLNC Silent p.E760E 0.18 TCGA-CK-4951-01 7 128486947 128486947 C T FLNC Missense_Mutation p.R1426W 0.31 deleterious(0) possibly_damaging(0.802) TCGA-CK-4951-01 7 128488964 128488964 G A FLNC Missense_Mutation p.D1619N 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 7 129815400 129815400 G A TMEM209 Silent p.G432G 0.21 TCGA-CK-4951-01 7 130417983 130417983 G A KLF14 Missense_Mutation p.T293I 0.28 deleterious_low_confidence(0) possibly_damaging(0.544) TCGA-CK-4951-01 7 134136450 134136450 C T AKR1B1 Missense_Mutation p.R41H 0.45 tolerated(0.1) benign(0.102) TCGA-CK-4951-01 7 135304178 135304178 A T NUP205 Missense_Mutation p.D1324V 0.21 tolerated(0.08) benign(0.405) TCGA-CK-4951-01 7 136700183 136700183 G A CHRM2 Missense_Mutation p.A191T 0.19 deleterious(0.02) possibly_damaging(0.646) TCGA-CK-4951-01 7 136938237 136938237 G A PTN Missense_Mutation p.P88L 0.39 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 136938248 136938248 T A PTN Missense_Mutation p.R84S 0.34 deleterious(0.02) benign(0.182) TCGA-CK-4951-01 7 137565204 137565204 G A CREB3L2 3'UTR 0.36 TCGA-CK-4951-01 7 138529083 138529083 G A KIAA1549 Missense_Mutation p.R1811W 0.36 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 138601661 138601661 G A KIAA1549 Missense_Mutation p.A904V 0.43 tolerated(0.2) benign(0.05) TCGA-CK-4951-01 7 138601761 138601761 T A KIAA1549 Missense_Mutation p.T871S 0.35 tolerated(0.12) benign(0.231) TCGA-CK-4951-01 7 138602061 138602061 G A KIAA1549 Missense_Mutation p.P771S 0.21 tolerated(0.54) probably_damaging(0.941) TCGA-CK-4951-01 7 138951117 138951117 C T UBN2 Silent p.F478F 0.33 TCGA-CK-4951-01 7 139298028 139298028 G A HIPK2 Nonsense_Mutation p.R678* 0.35 TCGA-CK-4951-01 7 13946216 13946216 T C ETV1 Missense_Mutation p.K317E 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 140051272 140051272 A G SLC37A3 Intron 0.15 TCGA-CK-4951-01 7 140171711 140171711 C T MKRN1 Missense_Mutation p.G96R 0.24 tolerated(0.07) probably_damaging(1) TCGA-CK-4951-01 7 140221791 140221791 C T DENND2A Silent p.E925E 0.52 TCGA-CK-4951-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.19 deleterious(0) probably_damaging(0.967) TCGA-CK-4951-01 7 142562268 142562268 G A EPHB6 Missense_Mutation p.R237Q 0.31 tolerated(0.52) benign(0.003) TCGA-CK-4951-01 7 142612498 142612498 C A TRPV5 Missense_Mutation p.G422V 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 142612543 142612543 A C TRPV5 Missense_Mutation p.I407S 0.19 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 142640065 142640065 C T KEL Missense_Mutation p.R613H 0.19 tolerated(0.36) benign(0.014) TCGA-CK-4951-01 7 142836683 142836683 T A PIP Missense_Mutation p.I130N 0.25 deleterious(0) benign(0.193) TCGA-CK-4951-01 7 143027911 143027911 G T CLCN1 Silent p.R300R 0.40 TCGA-CK-4951-01 7 143043306 143043306 C T CLCN1 Missense_Mutation p.P749L 0.10 tolerated(0.09) benign(0.003) TCGA-CK-4951-01 7 143047713 143047714 - G CLCN1 Frame_Shift_Ins p.K856Efs*16 0.26 TCGA-CK-4951-01 7 143094415 143094415 C T EPHA1 Missense_Mutation p.A585T 0.42 tolerated(0.57) benign(0.001) TCGA-CK-4951-01 7 143098444 143098444 A T EPHA1 Silent p.I135I 0.38 TCGA-CK-4951-01 7 144098642 144098642 T C NOBOX Missense_Mutation p.E114G 0.50 tolerated(0.33) benign(0.002) TCGA-CK-4951-01 7 147844641 147844641 G A CNTNAP2 Silent p.V871V 0.25 TCGA-CK-4951-01 7 147914480 147914480 C T CNTNAP2 Silent p.P1037P 0.23 TCGA-CK-4951-01 7 1484478 1484478 C T MICALL2 Missense_Mutation p.A410T 0.33 tolerated(0.25) benign(0.028) TCGA-CK-4951-01 7 148768511 148768511 C T ZNF786 Silent p.K451K 0.31 TCGA-CK-4951-01 7 148801249 148801249 G T ZNF425 Missense_Mutation p.H572N 0.36 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 148875896 148875896 G A ZNF398 Missense_Mutation p.R311H 0.29 tolerated(0.19) benign(0.001) TCGA-CK-4951-01 7 148876356 148876356 C T ZNF398 Silent p.F464F 0.25 TCGA-CK-4951-01 7 148876640 148876640 G A ZNF398 Missense_Mutation p.R559H 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 149558262 149558262 C T ZNF862 Silent p.F671F 0.27 TCGA-CK-4951-01 7 150068799 150068799 C T REPIN1 Nonsense_Mutation p.R214* 0.38 TCGA-CK-4951-01 7 150069221 150069221 C T REPIN1 Silent p.C354C 0.38 TCGA-CK-4951-01 7 150070454 150070454 C T REPIN1 3'Flank 0.23 TCGA-CK-4951-01 7 150070523 150070523 C T REPIN1 3'Flank 0.22 TCGA-CK-4951-01 7 150095139 150095139 C T ZNF775 Missense_Mutation p.H524Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 7 150217286 150217286 A G GIMAP7 Missense_Mutation p.D75G 0.35 tolerated(0.2) benign(0.014) TCGA-CK-4951-01 7 150710427 150710427 G A NOS3 Missense_Mutation p.R1072Q 0.36 tolerated(0.15) benign(0.005) TCGA-CK-4951-01 7 150710900 150710900 G A NOS3 Missense_Mutation p.G1115D 0.15 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 150711004 150711004 C T NOS3 Missense_Mutation p.R1150W 0.34 deleterious(0) possibly_damaging(0.636) TCGA-CK-4951-01 7 150721484 150721484 C - ATG9B Frame_Shift_Del p.R10Efs*96 0.28 TCGA-CK-4951-01 7 150764061 150764061 C - SLC4A2 Frame_Shift_Del p.H318Tfs*10 0.25 TCGA-CK-4951-01 7 150776764 150776764 G A FASTK Missense_Mutation p.R110C 0.43 tolerated_low_confidence(0.22) benign(0.003) TCGA-CK-4951-01 7 150835324 150835324 G A AGAP3 Silent p.Q530Q 0.34 TCGA-CK-4951-01 7 150934984 150934985 - A CHPF2 Frame_Shift_Ins p.N513Kfs*133 0.21 TCGA-CK-4951-01 7 151814359 151814359 G A GALNT11 Missense_Mutation p.V451I 0.37 tolerated(0.96) benign(0.002) TCGA-CK-4951-01 7 1519097 1519097 C T INTS1 Missense_Mutation p.C1433Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 1527082 1527082 C G INTS1 Silent p.G840G 0.35 TCGA-CK-4951-01 7 1527366 1527366 G A INTS1 Intron 0.17 TCGA-CK-4951-01 7 1533495 1533495 G T INTS1 Missense_Mutation p.R655S 0.26 deleterious(0) possibly_damaging(0.863) TCGA-CK-4951-01 7 154379504 154379504 C T DPP6 Intron 0.11 TCGA-CK-4951-01 7 155532689 155532689 T C RBM33 Missense_Mutation p.M673T 0.31 tolerated(0.16) unknown(0) TCGA-CK-4951-01 7 155567804 155567804 C T RBM33 3'UTR 0.45 TCGA-CK-4951-01 7 155599477 155599477 G A SHH Intron 0.09 TCGA-CK-4951-01 7 156799296 156799296 C T MNX1 Silent p.R243R 0.31 TCGA-CK-4951-01 7 157023837 157023837 G C UBE3C Missense_Mutation p.G766A 0.38 deleterious(0.03) possibly_damaging(0.498) TCGA-CK-4951-01 7 157202648 157202648 A T DNAJB6 Missense_Mutation p.D284V 0.29 deleterious(0.02) unknown(0) TCGA-CK-4951-01 7 158664247 158664247 C T WDR60 Missense_Mutation p.R162C 0.50 deleterious(0.03) possibly_damaging(0.896) TCGA-CK-4951-01 7 17843041 17843041 C T SNX13 Splice_Site p.X742_splice 0.20 TCGA-CK-4951-01 7 1784329 1784329 G A ELFN1 Missense_Mutation p.E33K 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 7 1785890 1785890 C T ELFN1 Missense_Mutation p.A553V 0.30 deleterious(0) possibly_damaging(0.905) TCGA-CK-4951-01 7 1786463 1786463 G A ELFN1 Missense_Mutation p.R744Q 0.26 deleterious(0) probably_damaging(0.973) TCGA-CK-4951-01 7 1787374 1787374 G A ELFN1 3'UTR 0.28 TCGA-CK-4951-01 7 1787393 1787393 G T ELFN1 3'UTR 0.24 TCGA-CK-4951-01 7 20434520 20434520 A T ITGB8 Missense_Mutation p.D353V 0.32 deleterious(0) possibly_damaging(0.833) TCGA-CK-4951-01 7 20824836 20824836 C T SP8 Silent p.A200A 0.44 TCGA-CK-4951-01 7 21659641 21659641 G A DNAH11 Missense_Mutation p.G1487D 0.31 possibly_damaging(0.691) TCGA-CK-4951-01 7 21742350 21742350 G A DNAH11 Missense_Mutation p.R2075H 0.25 probably_damaging(1) TCGA-CK-4951-01 7 21941872 21941872 G A CDCA7L 3'UTR 0.23 TCGA-CK-4951-01 7 2259082 2259082 C T MAD1L1 Missense_Mutation p.A161T 0.24 tolerated(0.65) benign(0.002) TCGA-CK-4951-01 7 2262278 2262278 G A MAD1L1 Nonsense_Mutation p.Q135* 0.23 TCGA-CK-4951-01 7 22986580 22986580 C T FAM126A Intron 0.23 TCGA-CK-4951-01 7 23213927 23213927 G A KLHL7 3'UTR 0.25 TCGA-CK-4951-01 7 23555996 23555996 G A TRA2A Missense_Mutation p.H108Y 0.41 deleterious(0.04) benign(0.152) TCGA-CK-4951-01 7 2411485 2411485 G A EIF3B Splice_Site p.X563_splice 0.17 TCGA-CK-4951-01 7 24331451 24331451 T C NPY 3'Flank 0.25 TCGA-CK-4951-01 7 2472244 2472244 C G CHST12 5'UTR 0.43 TCGA-CK-4951-01 7 26223360 26223360 G C NFE2L3 Missense_Mutation p.D264H 0.22 deleterious(0.01) probably_damaging(0.962) TCGA-CK-4951-01 7 2632682 2632682 C T IQCE Missense_Mutation p.A424V 0.22 tolerated(0.12) benign(0.033) TCGA-CK-4951-01 7 27148327 27148327 G T HOXA3 Missense_Mutation p.A180D 0.30 tolerated(0.49) possibly_damaging(0.665) TCGA-CK-4951-01 7 2771156 2771156 G A GNA12 Missense_Mutation p.R269W 0.26 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 7 27833973 27833973 C T TAX1BP1 Missense_Mutation p.T481M 0.27 tolerated(0.21) benign(0.003) TCGA-CK-4951-01 7 29606314 29606314 C - PRR15 Frame_Shift_Del p.H125Tfs*75 0.32 TCGA-CK-4951-01 7 2984115 2984115 G A CARD11 Nonsense_Mutation p.Q139* 0.32 TCGA-CK-4951-01 7 29923998 29923998 C - WIPF3 Frame_Shift_Del p.P298Lfs*76 0.40 TCGA-CK-4951-01 7 30695267 30695267 C T CRHR2 Missense_Mutation p.V355I 0.24 tolerated(0.23) benign(0.047) TCGA-CK-4951-01 7 30793366 30793366 G A INMT Silent p.T58T 0.35 TCGA-CK-4951-01 7 30806118 30806118 G A FAM188B 5'Flank 0.42 TCGA-CK-4951-01 7 30963093 30963093 G T AQP1 Missense_Mutation p.G220V 0.36 deleterious(0.03) probably_damaging(0.964) TCGA-CK-4951-01 7 31009375 31009375 C T GHRHR Intron 0.25 TCGA-CK-4951-01 7 32110099 32110099 G A PDE1C Intron 0.20 TCGA-CK-4951-01 7 32615594 32615594 G T AVL9 Missense_Mutation p.G533V 0.35 deleterious(0) probably_damaging(0.911) TCGA-CK-4951-01 7 32620430 32620430 G A AVL9 Missense_Mutation p.E587K 0.22 deleterious(0) possibly_damaging(0.773) TCGA-CK-4951-01 7 34192800 34192800 C T BMPER Missense_Mutation p.P658L 0.17 deleterious(0.03) possibly_damaging(0.787) TCGA-CK-4951-01 7 36561645 36561645 C T AOAH Silent p.E533E 0.34 TCGA-CK-4951-01 7 41730061 41730061 C T INHBA Nonsense_Mutation p.W156* 0.58 TCGA-CK-4951-01 7 42958897 42958897 G T PSMA2 Intron 0.20 TCGA-CK-4951-01 7 43484488 43484488 G A HECW1 Missense_Mutation p.A573T 0.26 tolerated_low_confidence(0.11) possibly_damaging(0.79) TCGA-CK-4951-01 7 43508589 43508589 G A HECW1 Missense_Mutation p.R995H 0.42 tolerated(0.85) benign(0.081) TCGA-CK-4951-01 7 44092477 44092477 C T DBNL Silent p.G88G 0.17 TCGA-CK-4951-01 7 44146285 44146285 A C AEBP1 Missense_Mutation p.K132Q 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-CK-4951-01 7 44150696 44150696 G A AEBP1 Intron 0.44 TCGA-CK-4951-01 7 44157600 44157600 C G POLD2 Missense_Mutation p.G95A 0.18 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 44576506 44576506 G A NPC1L1 Missense_Mutation p.A539V 0.27 tolerated(0.22) benign(0.258) TCGA-CK-4951-01 7 44806152 44806152 G T ZMIZ2 Missense_Mutation p.G849C 0.24 deleterious(0.01) possibly_damaging(0.592) TCGA-CK-4951-01 7 45121963 45121963 C T NACAD Silent p.P1272P 0.34 TCGA-CK-4951-01 7 45122920 45122920 G A NACAD Silent p.G953G 0.27 TCGA-CK-4951-01 7 47384631 47384631 C T TNS3 Missense_Mutation p.M819I 0.50 tolerated(0.28) benign(0) TCGA-CK-4951-01 7 47384634 47384634 C T TNS3 Silent p.T818T 0.47 TCGA-CK-4951-01 7 4841484 4841484 G - RADIL Frame_Shift_Del p.P881Lfs*110 0.29 TCGA-CK-4951-01 7 48563978 48563978 G A ABCA13 Missense_Mutation p.R4729H 0.31 benign(0.004) TCGA-CK-4951-01 7 5254140 5254140 G A WIPI2 Intron 0.22 TCGA-CK-4951-01 7 5352431 5352431 C T TNRC18 Silent p.A2697A 0.25 TCGA-CK-4951-01 7 54610383 54610383 G A VSTM2A 5'UTR 0.31 TCGA-CK-4951-01 7 54610384 54610384 G A VSTM2A 5'UTR 0.31 TCGA-CK-4951-01 7 5521347 5521347 G A FBXL18 3'UTR 0.36 TCGA-CK-4951-01 7 55224491 55224491 A G EGFR Silent p.E391E 0.38 TCGA-CK-4951-01 7 5529569 5529569 C G FBXL18 Intron 0.31 TCGA-CK-4951-01 7 5540219 5540219 G A FBXL18 Missense_Mutation p.R561W 0.27 deleterious(0) possibly_damaging(0.631) TCGA-CK-4951-01 7 5540387 5540387 C T FBXL18 Missense_Mutation p.A505T 0.31 tolerated(0.12) possibly_damaging(0.902) TCGA-CK-4951-01 7 55468896 55468896 G A LANCL2 Silent p.K236K 0.31 TCGA-CK-4951-01 7 5568926 5568926 T A ACTB Missense_Mutation p.T77S 0.26 tolerated_low_confidence(0.08) benign(0.001) TCGA-CK-4951-01 7 5569284 5569284 T G ACTB Missense_Mutation p.D2A 0.32 tolerated_low_confidence(0.09) benign(0.26) TCGA-CK-4951-01 7 5643530 5643530 G A FSCN1 Missense_Mutation p.R383H 0.22 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 5645008 5645008 C T FSCN1 Missense_Mutation p.A462V 0.29 deleterious(0.04) possibly_damaging(0.652) TCGA-CK-4951-01 7 57510008 57510008 C T ZNF716 Missense_Mutation p.P5L 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.823) TCGA-CK-4951-01 7 6077065 6077065 C T EIF2AK1 Missense_Mutation p.R441Q 0.25 deleterious(0) probably_damaging(0.969) TCGA-CK-4951-01 7 6204586 6204586 T A CYTH3 Missense_Mutation p.N397Y 0.25 tolerated(0.19) possibly_damaging(0.568) TCGA-CK-4951-01 7 6370015 6370015 G A FAM220A Silent p.C257C 0.29 TCGA-CK-4951-01 7 64292057 64292057 A G ZNF138 Missense_Mutation p.K120R 0.32 tolerated(0.06) benign(0.167) TCGA-CK-4951-01 7 6487435 6487435 G A DAGLB Silent p.I13I 0.37 TCGA-CK-4951-01 7 65445302 65445302 T C GUSB Missense_Mutation p.E102G 0.33 deleterious(0) probably_damaging(0.958) TCGA-CK-4951-01 7 66273929 66273929 G A KCTD7 Silent p.Q378Q 0.29 TCGA-CK-4951-01 7 66273930 66273930 G A KCTD7 Missense_Mutation p.E379K 0.29 deleterious(0.01) benign(0.27) TCGA-CK-4951-01 7 66460419 66460419 G A SBDS 5'UTR 0.38 TCGA-CK-4951-01 7 6656822 6656822 C A ZNF853 Missense_Mutation p.P5Q 0.50 deleterious_low_confidence(0) unknown(0) TCGA-CK-4951-01 7 6662388 6662388 G A ZNF853 Missense_Mutation p.R589H 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-CK-4951-01 7 6786744 6786744 G A PMS2CL RNA 0.27 TCGA-CK-4951-01 7 6844678 6844678 G A CCZ1B Missense_Mutation p.H333Y 0.37 deleterious(0.03) benign(0.036) TCGA-CK-4951-01 7 70255889 70255889 C T AUTS2 Silent p.G1229G 0.38 TCGA-CK-4951-01 7 720260 720260 C T PRKAR1B Missense_Mutation p.R94H 0.24 deleterious(0.01) probably_damaging(0.975) TCGA-CK-4951-01 7 72412790 72412790 C T POM121 Missense_Mutation p.T488I 0.26 deleterious(0.02) benign(0.44) TCGA-CK-4951-01 7 72985105 72985105 G A TBL2 Missense_Mutation p.T359I 0.37 deleterious(0) benign(0.273) TCGA-CK-4951-01 7 73255457 73255457 C T WBSCR27 Silent p.P65P 0.34 TCGA-CK-4951-01 7 73511476 73511476 G T LIMK1 Missense_Mutation p.D120Y 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-CK-4951-01 7 73535524 73535524 G A LIMK1 Missense_Mutation p.G613S 0.31 tolerated(0.72) benign(0.001) TCGA-CK-4951-01 7 73609162 73609162 C T EIF4H Silent p.G187G 0.24 TCGA-CK-4951-01 7 73654378 73654378 C T RFC2 Missense_Mutation p.D195N 0.33 tolerated(0.08) benign(0.013) TCGA-CK-4951-01 7 73774559 73774559 G A CLIP2 Missense_Mutation p.V424M 0.30 tolerated(0.06) benign(0.043) TCGA-CK-4951-01 7 73795142 73795142 G A CLIP2 Missense_Mutation p.E810K 0.27 tolerated(0.26) benign(0.14) TCGA-CK-4951-01 7 74211494 74211494 G A GTF2IRD2 Missense_Mutation p.A786V 0.34 deleterious(0.04) probably_damaging(0.997) TCGA-CK-4951-01 7 74300615 74300615 G A STAG3L2 RNA 0.14 TCGA-CK-4951-01 7 75024676 75024676 C T TRIM73 5'Flank 0.21 TCGA-CK-4951-01 7 75047989 75047989 C T POM121C 3'UTR 0.22 TCGA-CK-4951-01 7 75614511 75614511 G A POR Missense_Mutation p.A462T 0.33 deleterious(0) benign(0.246) TCGA-CK-4951-01 7 75615082 75615082 C T POR Silent p.T528T 0.35 TCGA-CK-4951-01 7 75693661 75693661 C - MDH2 Frame_Shift_Del p.K215Rfs*9 0.19 TCGA-CK-4951-01 7 76112238 76112238 C T DTX2 Nonsense_Mutation p.Q228* 0.26 TCGA-CK-4951-01 7 7677556 7677556 G A RPA3 Silent p.T74T 0.20 TCGA-CK-4951-01 7 77423563 77423563 C T TMEM60 Nonsense_Mutation p.W43* 0.09 TCGA-CK-4951-01 7 80103683 80103683 A T GNAT3 Missense_Mutation p.D158E 0.47 tolerated(0.19) benign(0.006) TCGA-CK-4951-01 7 819767 819767 A C HEATR2 Missense_Mutation p.Q806P 0.32 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 7 8198205 8198205 A G ICA1 Silent p.L219L 0.26 TCGA-CK-4951-01 7 83026021 83026021 A T SEMA3E Missense_Mutation p.I464N 0.27 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 86394606 86394606 G A GRM3 Missense_Mutation p.E49K 0.37 tolerated(0.22) possibly_damaging(0.731) TCGA-CK-4951-01 7 87514327 87514327 T C DBF4 Missense_Mutation p.Y85H 0.31 deleterious(0) possibly_damaging(0.867) TCGA-CK-4951-01 7 882994 882994 C T SUN1 Silent p.A165A 0.14 TCGA-CK-4951-01 7 88964055 88964055 T A ZNF804B Missense_Mutation p.S587T 0.35 deleterious(0) benign(0.21) TCGA-CK-4951-01 7 90895503 90895503 C T FZD1 Silent p.G436G 0.36 TCGA-CK-4951-01 7 90896679 90896679 C A FZD1 3'UTR 0.32 TCGA-CK-4951-01 7 91690591 91690591 G A AKAP9 Silent p.V1873V 0.31 TCGA-CK-4951-01 7 91737871 91737871 C T AKAP9 Silent p.Y3870Y 0.34 TCGA-CK-4951-01 7 91775440 91775440 T G LRRD1 Missense_Mutation p.K785Q 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 91775493 91775493 A T LRRD1 Missense_Mutation p.F767Y 0.32 deleterious(0.01) possibly_damaging(0.765) TCGA-CK-4951-01 7 92077043 92077043 C T GATAD1 5'UTR 0.24 TCGA-CK-4951-01 7 92763619 92763619 G T SAMD9L Missense_Mutation p.P556T 0.34 tolerated(0.15) possibly_damaging(0.578) TCGA-CK-4951-01 7 92821577 92821577 C T HEPACAM2 Missense_Mutation p.D459N 0.38 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-CK-4951-01 7 92821646 92821646 A T HEPACAM2 Missense_Mutation p.C436S 0.23 tolerated(0.62) benign(0) TCGA-CK-4951-01 7 92826814 92826814 T - HEPACAM2 Frame_Shift_Del p.K374Nfs*8 0.19 TCGA-CK-4951-01 7 94038721 94038721 G A COL1A2 Missense_Mutation p.V294I 0.40 unknown(0) TCGA-CK-4951-01 7 94055117 94055117 G C COL1A2 Missense_Mutation p.G964A 0.31 unknown(0) TCGA-CK-4951-01 7 94928133 94928133 C T PON1 3'UTR 0.50 TCGA-CK-4951-01 7 95166893 95166894 - T ASB4 Frame_Shift_Ins p.Y370Lfs*10 0.20 TCGA-CK-4951-01 7 95822478 95822478 G A SLC25A13 Silent p.H162H 0.27 TCGA-CK-4951-01 7 966274 966274 C T ADAP1 Missense_Mutation p.A74T 0.17 tolerated(0.53) benign(0.016) TCGA-CK-4951-01 7 96650226 96650226 C T DLX5 Missense_Mutation p.R231H 0.30 deleterious(0.03) probably_damaging(0.964) TCGA-CK-4951-01 7 97822908 97822908 T C LMTK2 Missense_Mutation p.L1044S 0.35 tolerated(0.06) benign(0.088) TCGA-CK-4951-01 7 97863013 97863013 G A TECPR1 Silent p.A464A 0.39 TCGA-CK-4951-01 7 98491423 98491423 G A TRRAP Silent p.T123T 0.30 TCGA-CK-4951-01 7 98592446 98592446 G T TRRAP Missense_Mutation p.Q3414H 0.40 benign(0.321) TCGA-CK-4951-01 7 98609919 98609919 G A TRRAP Missense_Mutation p.A3841T 0.43 possibly_damaging(0.611) TCGA-CK-4951-01 7 98790726 98790726 T A KPNA7 Splice_Site p.X185_splice 0.19 TCGA-CK-4951-01 7 98990341 98990341 G A ARPC1B Silent p.G277G 0.30 TCGA-CK-4951-01 7 99001031 99001033 TCT - PDAP1 In_Frame_Del p.E67del 0.25 TCGA-CK-4951-01 7 99022533 99022533 G A ATP5J2-PTCD1 Missense_Mutation p.A590V 0.23 deleterious(0.02) probably_damaging(0.951) TCGA-CK-4951-01 7 99054204 99054204 C T CPSF4 3'UTR 0.36 TCGA-CK-4951-01 7 99110132 99110132 G A ZKSCAN5 Silent p.Q157Q 0.36 TCGA-CK-4951-01 7 99526758 99526758 C T GJC3 Silent p.Q162Q 0.28 TCGA-CK-4951-01 7 99621255 99621255 C T ZKSCAN1 Silent p.S42S 0.32 TCGA-CK-4951-01 7 99655323 99655323 C T ZSCAN21 Silent p.V134V 0.31 TCGA-CK-4951-01 7 99688718 99688718 A T COPS6 Missense_Mutation p.I198F 0.32 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 7 99688933 99688933 A T COPS6 Missense_Mutation p.Y241F 0.33 deleterious(0.04) probably_damaging(0.996) TCGA-CK-4951-01 7 99699292 99699292 G A AP4M1 5'UTR 0.42 TCGA-CK-4951-01 7 99701046 99701046 A G AP4M1 Silent p.V122V 0.12 TCGA-CK-4951-01 7 99704794 99704794 C T AP4M1 3'UTR 0.36 TCGA-CK-4951-01 7 99709758 99709758 G A TAF6 Silent p.C268C 0.21 TCGA-CK-4951-01 7 99720191 99720191 A G CNPY4 Silent p.R111R 0.27 TCGA-CK-4951-01 7 99817996 99817996 C T PVRIG Silent p.P126P 0.22 TCGA-CK-4951-01 7 99950009 99950009 C T PILRB 5'UTR 0.30 TCGA-CK-4951-01 7 99971779 99971779 G T PILRA Missense_Mutation p.W59C 0.34 deleterious(0) probably_damaging(0.971) TCGA-CK-4951-01 8 100108542 100108542 T A VPS13B Missense_Mutation p.D98E 0.29 tolerated(0.25) probably_damaging(0.918) TCGA-CK-4951-01 8 100168829 100168829 C T VPS13B Missense_Mutation p.P689L 0.09 deleterious(0) probably_damaging(0.981) TCGA-CK-4951-01 8 101717208 101717208 A T PABPC1 Silent p.I588I 0.35 TCGA-CK-4951-01 8 101724618 101724618 G A PABPC1 Missense_Mutation p.S315F 0.10 deleterious(0) probably_damaging(0.957) TCGA-CK-4951-01 8 101965189 101965189 G A YWHAZ 5'UTR 0.26 TCGA-CK-4951-01 8 104080988 104080988 C - ATP6V1C1 3'UTR 0.17 TCGA-CK-4951-01 8 10470402 10470402 C A RP1L1 Silent p.G402G 0.36 TCGA-CK-4951-01 8 105440211 105440211 G A DPYS Silent p.G363G 0.17 TCGA-CK-4951-01 8 105502938 105502938 T - LRP12 Frame_Shift_Del p.N848Tfs*39 0.23 TCGA-CK-4951-01 8 10557969 10557969 G T C8orf74 Missense_Mutation p.K291N 0.39 deleterious(0.02) unknown(0) TCGA-CK-4951-01 8 107773655 107773655 C A ABRA Missense_Mutation p.W252C 0.31 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 8 108970378 108970378 T A RSPO2 Missense_Mutation p.K182N 0.15 tolerated(0.25) probably_damaging(0.966) TCGA-CK-4951-01 8 108970441 108970441 G A RSPO2 Silent p.R161R 0.19 TCGA-CK-4951-01 8 108970449 108970449 T A RSPO2 Missense_Mutation p.N159Y 0.18 deleterious(0.04) possibly_damaging(0.904) TCGA-CK-4951-01 8 108970462 108970462 T A RSPO2 Silent p.G154G 0.19 TCGA-CK-4951-01 8 109001376 109001376 C T RSPO2 Missense_Mutation p.R64Q 0.35 tolerated(0.07) probably_damaging(0.935) TCGA-CK-4951-01 8 110476709 110476709 A G PKHD1L1 Missense_Mutation p.T2550A 0.29 deleterious(0) benign(0.091) TCGA-CK-4951-01 8 110587648 110587648 C T SYBU Silent p.V493V 0.37 TCGA-CK-4951-01 8 11174300 11174300 T C MTMR9 Missense_Mutation p.F411S 0.24 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 8 113655812 113655812 G T CSMD3 Intron 0.16 TCGA-CK-4951-01 8 11414275 11414275 A C BLK Missense_Mutation p.E294A 0.18 tolerated(0.24) benign(0.067) TCGA-CK-4951-01 8 116616282 116616282 G A TRPS1 Silent p.D638D 0.41 TCGA-CK-4951-01 8 117859872 117859872 G A RAD21 Missense_Mutation p.T588M 0.40 deleterious(0.04) possibly_damaging(0.88) TCGA-CK-4951-01 8 117875374 117875374 C T RAD21 Missense_Mutation p.R90Q 0.26 deleterious(0.01) possibly_damaging(0.651) TCGA-CK-4951-01 8 121015322 121015322 C - DEPTOR Frame_Shift_Del p.P301Lfs*10 0.29 TCGA-CK-4951-01 8 124696899 124696899 G A ANXA13 Missense_Mutation p.A302V 0.31 tolerated(0.26) benign(0.003) TCGA-CK-4951-01 8 124701116 124701116 G C ANXA13 Missense_Mutation p.T279S 0.28 tolerated(0.06) possibly_damaging(0.891) TCGA-CK-4951-01 8 126021275 126021275 G A SQLE Silent p.L295L 0.26 TCGA-CK-4951-01 8 126071765 126071765 A G KIAA0196 Missense_Mutation p.L514S 0.24 deleterious(0) probably_damaging(0.943) TCGA-CK-4951-01 8 126448385 126448385 C A TRIB1 Missense_Mutation p.A264D 0.32 deleterious(0) benign(0.155) TCGA-CK-4951-01 8 128748755 128748755 A T MYC 5'UTR 0.18 TCGA-CK-4951-01 8 12882414 12882414 T - KIAA1456 3'UTR 0.38 TCGA-CK-4951-01 8 12952636 12952636 G - DLC1 Frame_Shift_Del p.Q1096Sfs*33 0.24 TCGA-CK-4951-01 8 133978921 133978921 G A TG Missense_Mutation p.A1889T 0.22 deleterious(0) probably_damaging(0.996) TCGA-CK-4951-01 8 135613909 135613909 G A ZFAT Missense_Mutation p.L685F 0.24 tolerated(0.09) benign(0.188) TCGA-CK-4951-01 8 139158219 139158219 T A FAM135B Missense_Mutation p.M1175L 0.21 deleterious(0.01) benign(0.384) TCGA-CK-4951-01 8 139158249 139158249 C T FAM135B Missense_Mutation p.G1165R 0.22 deleterious(0) possibly_damaging(0.55) TCGA-CK-4951-01 8 139180237 139180237 T C FAM135B Missense_Mutation p.S387G 0.24 deleterious(0) benign(0.14) TCGA-CK-4951-01 8 139180241 139180241 G A FAM135B Silent p.L385L 0.24 TCGA-CK-4951-01 8 141461241 141461241 C T TRAPPC9 Missense_Mutation p.V176M 0.37 tolerated(0.09) probably_damaging(0.996) TCGA-CK-4951-01 8 141521595 141521595 G A CHRAC1 5'UTR 0.49 TCGA-CK-4951-01 8 141595241 141595241 C T AGO2 Silent p.E64E 0.33 TCGA-CK-4951-01 8 141595291 141595291 C T AGO2 Missense_Mutation p.D48N 0.39 tolerated(0.07) benign(0.001) TCGA-CK-4951-01 8 141678503 141678503 G A PTK2 Silent p.S923S 0.39 TCGA-CK-4951-01 8 142202748 142202748 C A DENND3 Silent p.R1128R 0.29 TCGA-CK-4951-01 8 142228496 142228496 G A SLC45A4 Missense_Mutation p.R364W 0.24 deleterious(0) probably_damaging(0.982) TCGA-CK-4951-01 8 143365794 143365794 G A TSNARE1 Missense_Mutation p.S448L 0.11 tolerated(0.59) benign(0.253) TCGA-CK-4951-01 8 143559569 143559569 G A BAI1 Nonsense_Mutation p.W470* 0.25 TCGA-CK-4951-01 8 143559657 143559658 - G BAI1 Frame_Shift_Ins p.A502Cfs*64 0.15 TCGA-CK-4951-01 8 143599530 143599530 C T BAI1 Missense_Mutation p.T950M 0.23 deleterious(0.01) probably_damaging(0.938) TCGA-CK-4951-01 8 143618432 143618432 G A BAI1 Missense_Mutation p.A1219T 0.46 tolerated(0.17) benign(0.141) TCGA-CK-4951-01 8 143746031 143746031 C T JRK RNA 0.35 TCGA-CK-4951-01 8 144461510 144461510 C T RHPN1 Silent p.N259N 0.30 TCGA-CK-4951-01 8 144649977 144649977 G A MROH6 Missense_Mutation p.R616W 0.31 tolerated(0.14) benign(0.016) TCGA-CK-4951-01 8 144735210 144735210 C T ZNF623 3'UTR 0.37 TCGA-CK-4951-01 8 144776098 144776098 G A ZNF707 Missense_Mutation p.V172I 0.29 tolerated(0.14) benign(0.001) TCGA-CK-4951-01 8 144809839 144809839 C T FAM83H Missense_Mutation p.D598N 0.43 deleterious(0) benign(0.074) TCGA-CK-4951-01 8 144873411 144873411 G A SCRIB Silent p.G1630G 0.39 TCGA-CK-4951-01 8 144886983 144886983 C T SCRIB Missense_Mutation p.D922N 0.33 probably_damaging(0.999) TCGA-CK-4951-01 8 144887304 144887304 G A SCRIB Missense_Mutation p.T883I 0.30 probably_damaging(0.915) TCGA-CK-4951-01 8 144899107 144899107 C T PUF60 Silent p.V451V 0.24 TCGA-CK-4951-01 8 144941217 144941217 G A EPPK1 Nonsense_Mutation p.Q2069* 0.29 TCGA-CK-4951-01 8 144942055 144942055 A T EPPK1 Missense_Mutation p.F1789L 0.30 possibly_damaging(0.874) TCGA-CK-4951-01 8 144947157 144947157 G A EPPK1 Missense_Mutation p.R89W 0.29 benign(0.417) TCGA-CK-4951-01 8 144947158 144947158 G A EPPK1 Silent p.A88A 0.30 TCGA-CK-4951-01 8 144947164 144947164 G A EPPK1 Silent p.D86D 0.32 TCGA-CK-4951-01 8 144947314 144947314 G - EPPK1 Frame_Shift_Del p.R37Gfs*7 0.44 TCGA-CK-4951-01 8 144947352 144947352 T C EPPK1 Missense_Mutation p.R24G 0.43 benign(0.004) TCGA-CK-4951-01 8 145007157 145007157 C T PLEC Missense_Mutation p.R651H 0.26 unknown(0) TCGA-CK-4951-01 8 145009239 145009239 G A PLEC Silent p.V392V 0.42 TCGA-CK-4951-01 8 145010051 145010051 G A PLEC Silent p.D326D 0.24 TCGA-CK-4951-01 8 145060349 145060349 G C PARP10 Missense_Mutation p.P19A 0.14 deleterious(0.03) benign(0.009) TCGA-CK-4951-01 8 145109979 145109979 G - OPLAH Frame_Shift_Del p.H788Tfs*31 0.19 TCGA-CK-4951-01 8 145110046 145110046 G C OPLAH Missense_Mutation p.I765M 0.29 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 8 145135388 145135388 G A EXOSC4 Missense_Mutation p.D208N 0.31 tolerated(0.08) benign(0.216) TCGA-CK-4951-01 8 145135457 145135457 G A EXOSC4 Missense_Mutation p.V231M 0.35 tolerated(0.09) benign(0.154) TCGA-CK-4951-01 8 145579672 145579672 G A FBXL6 Silent p.C476C 0.46 TCGA-CK-4951-01 8 145579732 145579732 G A FBXL6 Silent p.D456D 0.27 TCGA-CK-4951-01 8 145583459 145583459 G A SLC52A2 Missense_Mutation p.A103T 0.24 tolerated(0.48) benign(0.008) TCGA-CK-4951-01 8 145583765 145583765 G A SLC52A2 Missense_Mutation p.V205I 0.27 tolerated(0.15) benign(0.007) TCGA-CK-4951-01 8 145583888 145583888 G A SLC52A2 Missense_Mutation p.E246K 0.31 tolerated(0.2) possibly_damaging(0.791) TCGA-CK-4951-01 8 145584019 145584019 G A SLC52A2 Silent p.L289L 0.23 TCGA-CK-4951-01 8 145584691 145584691 G A SLC52A2 3'UTR 0.27 TCGA-CK-4951-01 8 145618495 145618495 G A CPSF1 3'UTR 0.36 TCGA-CK-4951-01 8 145618736 145618736 G A CPSF1 Silent p.N1405N 0.24 TCGA-CK-4951-01 8 145618906 145618906 G A CPSF1 Missense_Mutation p.A1374V 0.35 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 8 145650339 145650339 C T VPS28 Missense_Mutation p.R97H 0.44 deleterious(0.02) benign(0.03) TCGA-CK-4951-01 8 145660729 145660729 G A TONSL Intron 0.18 TCGA-CK-4951-01 8 145669288 145669288 C T TONSL Missense_Mutation p.E81K 0.27 tolerated(0.3) possibly_damaging(0.538) TCGA-CK-4951-01 8 146033632 146033632 G A ZNF517 Missense_Mutation p.R444Q 0.37 deleterious(0.05) possibly_damaging(0.553) TCGA-CK-4951-01 8 146157235 146157235 T A ZNF16 Missense_Mutation p.K313M 0.39 deleterious(0.01) benign(0.41) TCGA-CK-4951-01 8 16850592 16850592 T A FGF20 Missense_Mutation p.M209L 0.09 tolerated_low_confidence(0.86) benign(0) TCGA-CK-4951-01 8 16859461 16859461 C A FGF20 Missense_Mutation p.L27F 0.37 deleterious(0.05) probably_damaging(0.986) TCGA-CK-4951-01 8 17067534 17067536 AGA - ZDHHC2 In_Frame_Del p.K277del 0.27 TCGA-CK-4951-01 8 17089802 17089802 G A CNOT7 Intron 0.36 TCGA-CK-4951-01 8 17409463 17409463 C T SLC7A2 Silent p.V381V 0.32 TCGA-CK-4951-01 8 17843558 17843558 G A PCM1 Missense_Mutation p.E1458K 0.33 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 8 18490168 18490168 C A PSD3 Nonsense_Mutation p.G789* 0.22 TCGA-CK-4951-01 8 19221685 19221685 G A SH2D4A Missense_Mutation p.G270D 0.28 tolerated(0.05) benign(0.14) TCGA-CK-4951-01 8 2021527 2021527 G A MYOM2 Missense_Mutation p.R356H 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 8 21905490 21905490 C T FGF17 Silent p.C127C 0.23 TCGA-CK-4951-01 8 21905568 21905568 C T FGF17 Silent p.F153F 0.24 TCGA-CK-4951-01 8 21965124 21965124 C T NUDT18 Missense_Mutation p.G220D 0.37 tolerated(0.06) benign(0.178) TCGA-CK-4951-01 8 21981229 21981229 G A HR Silent p.R616R 0.33 TCGA-CK-4951-01 8 21986670 21986670 G A HR Missense_Mutation p.P5L 0.26 deleterious_low_confidence(0.01) probably_damaging(0.938) TCGA-CK-4951-01 8 22081772 22081772 C T PHYHIP Missense_Mutation p.R142H 0.24 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 8 22422784 22422784 C T SORBS3 Silent p.L274L 0.14 TCGA-CK-4951-01 8 22548096 22548096 C T EGR3 Missense_Mutation p.A352T 0.41 tolerated(1) probably_damaging(0.922) TCGA-CK-4951-01 8 22548772 22548772 C A EGR3 Silent p.T126T 0.23 TCGA-CK-4951-01 8 22864769 22864769 C T RHOBTB2 Silent p.D359D 0.27 TCGA-CK-4951-01 8 22880318 22880318 C T TNFRSF10B Missense_Mutation p.A397T 0.27 tolerated(0.06) possibly_damaging(0.833) TCGA-CK-4951-01 8 23049462 23049462 C T TNFRSF10A Missense_Mutation p.M384I 0.38 deleterious(0.02) possibly_damaging(0.574) TCGA-CK-4951-01 8 23049468 23049468 C A TNFRSF10A Missense_Mutation p.Q382H 0.38 tolerated(0.06) benign(0.089) TCGA-CK-4951-01 8 25101207 25101207 G A DOCK5 Missense_Mutation p.A21T 0.28 tolerated(0.14) possibly_damaging(0.791) TCGA-CK-4951-01 8 25253213 25253213 G T DOCK5 Missense_Mutation p.G1561V 0.39 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 8 25287197 25287197 A - KCTD9 3'UTR 0.25 TCGA-CK-4951-01 8 25298112 25298112 G A KCTD9 Missense_Mutation p.R98W 0.36 deleterious(0) probably_damaging(0.912) TCGA-CK-4951-01 8 26237458 26237458 T C BNIP3L 5'Flank 0.32 TCGA-CK-4951-01 8 27462613 27462613 G C CLU Missense_Mutation p.F219L 0.31 tolerated(0.77) benign(0.014) TCGA-CK-4951-01 8 27610057 27610057 G A CCDC25 Silent p.A72A 0.27 TCGA-CK-4951-01 8 28206719 28206719 G A ZNF395 Silent p.S451S 0.25 TCGA-CK-4951-01 8 2830712 2830712 G A CSMD1 Silent p.H2950H 0.39 TCGA-CK-4951-01 8 28908625 28908625 C T HMBOX1 Nonsense_Mutation p.R406* 0.43 TCGA-CK-4951-01 8 28928006 28928006 C T KIF13B 3'UTR 0.35 TCGA-CK-4951-01 8 29194464 29194464 G A DUSP4 3'UTR 0.23 TCGA-CK-4951-01 8 29194576 29194576 C T DUSP4 Silent p.L384L 0.26 TCGA-CK-4951-01 8 3019780 3019780 G A CSMD1 Silent p.C1915C 0.31 TCGA-CK-4951-01 8 3057310 3057310 G A CSMD1 Missense_Mutation p.T1707M 0.38 probably_damaging(0.95) TCGA-CK-4951-01 8 30915920 30915920 T C WRN 5'UTR 0.31 TCGA-CK-4951-01 8 37611633 37611633 A G ERLIN2 Nonstop_Mutation p.*340Wext*11 0.22 TCGA-CK-4951-01 8 37698861 37698861 C T GPR124 Missense_Mutation p.T1002M 0.17 tolerated(0.09) benign(0.02) TCGA-CK-4951-01 8 37823251 37823251 G A ADRB3 Missense_Mutation p.P246L 0.38 tolerated(0.75) probably_damaging(0.958) TCGA-CK-4951-01 8 37823568 37823568 G A ADRB3 Silent p.T140T 0.35 TCGA-CK-4951-01 8 38003887 38003887 G A STAR Missense_Mutation p.P129S 0.17 tolerated(0.23) benign(0.037) TCGA-CK-4951-01 8 38090516 38090516 T C DDHD2 Missense_Mutation p.S2P 0.27 deleterious_low_confidence(0) unknown(0) TCGA-CK-4951-01 8 38851173 38851173 C T TM2D2 Missense_Mutation p.G108S 0.32 deleterious(0) possibly_damaging(0.791) TCGA-CK-4951-01 8 39138660 39138660 A T ADAM32 Missense_Mutation p.K762I 0.08 tolerated_low_confidence(0.13) possibly_damaging(0.703) TCGA-CK-4951-01 8 39771528 39771528 G T IDO1 Missense_Mutation p.Q29H 0.24 deleterious(0) possibly_damaging(0.625) TCGA-CK-4951-01 8 41160977 41160977 T A SFRP1 Intron 0.09 TCGA-CK-4951-01 8 41476220 41476220 C T AGPAT6 Silent p.G357G 0.33 TCGA-CK-4951-01 8 42608317 42608317 A G CHRNA6 3'UTR 0.23 TCGA-CK-4951-01 8 43016643 43016643 T C HGSNAT Silent p.L186L 0.35 TCGA-CK-4951-01 8 48641569 48641569 T A SPIDR Missense_Mutation p.L837Q 0.27 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 8 52322092 52322092 G A PXDNL Missense_Mutation p.R698C 0.33 deleterious(0.02) possibly_damaging(0.586) TCGA-CK-4951-01 8 53852813 53852813 G A NPBWR1 Missense_Mutation p.D116N 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 8 53852902 53852902 C T NPBWR1 Silent p.R145R 0.30 TCGA-CK-4951-01 8 54793589 54793589 A G RGS20 Intron 0.45 TCGA-CK-4951-01 8 56015416 56015416 T A XKR4 Missense_Mutation p.F123Y 0.28 deleterious(0) possibly_damaging(0.527) TCGA-CK-4951-01 8 56015428 56015428 G A XKR4 Missense_Mutation p.G127D 0.29 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 8 56708581 56708581 T C TGS1 Missense_Mutation p.L471S 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 8 56711482 56711482 T A TGS1 Missense_Mutation p.F518I 0.33 deleterious(0) possibly_damaging(0.613) TCGA-CK-4951-01 8 56912070 56912070 T A LYN Missense_Mutation p.L433Q 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 8 56912072 56912072 T A LYN Missense_Mutation p.Y434N 0.31 deleterious(0.02) probably_damaging(0.994) TCGA-CK-4951-01 8 57025882 57025882 G A MOS Silent p.F220F 0.15 TCGA-CK-4951-01 8 57080634 57080634 T C PLAG1 Missense_Mutation p.I65M 0.35 tolerated(0.09) benign(0.003) TCGA-CK-4951-01 8 59059603 59059603 G A FAM110B Missense_Mutation p.A272T 0.21 deleterious(0) possibly_damaging(0.771) TCGA-CK-4951-01 8 61736594 61736594 G A CHD7 Intron 0.31 TCGA-CK-4951-01 8 61778459 61778459 G A CHD7 Silent p.G2987G 0.27 TCGA-CK-4951-01 8 62546273 62546273 A - ASPH Frame_Shift_Del p.P302Lfs*33 0.18 TCGA-CK-4951-01 8 62577814 62577814 C T ASPH Intron 0.29 TCGA-CK-4951-01 8 62578066 62578066 T A ASPH Intron 0.35 TCGA-CK-4951-01 8 6566306 6566306 C T AGPAT5 Silent p.S39S 0.13 TCGA-CK-4951-01 8 67706035 67706035 G A SGK3 Missense_Mutation p.D22N 0.23 tolerated_low_confidence(0.34) benign(0.088) TCGA-CK-4951-01 8 68130101 68130101 A G ARFGEF1 Missense_Mutation p.L1510P 0.29 tolerated(0.25) possibly_damaging(0.707) TCGA-CK-4951-01 8 68334868 68334868 A G CPA6 Silent p.F395F 0.22 TCGA-CK-4951-01 8 68942798 68942798 A C PREX2 Missense_Mutation p.M204L 0.26 deleterious(0.02) possibly_damaging(0.881) TCGA-CK-4951-01 8 70981875 70981875 G A PRDM14 Missense_Mutation p.A74V 0.29 tolerated(0.28) benign(0.02) TCGA-CK-4951-01 8 72229906 72229906 A T EYA1 Missense_Mutation p.I146N 0.25 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 8 7308714 7308714 G T SPAG11B Intron 0.24 TCGA-CK-4951-01 8 73849942 73849942 G A KCNB2 Silent p.L784L 0.28 TCGA-CK-4951-01 8 75757638 75757638 C T PI15 Missense_Mutation p.R183W 0.27 deleterious(0) probably_damaging(0.914) TCGA-CK-4951-01 8 75926306 75926306 G T CRISPLD1 Missense_Mutation p.A199S 0.33 deleterious(0.04) benign(0.06) TCGA-CK-4951-01 8 77766465 77766465 G A ZFHX4 Silent p.S2436S 0.29 TCGA-CK-4951-01 8 77767090 77767090 A - ZFHX4 Frame_Shift_Del p.R2647Gfs*44 0.22 TCGA-CK-4951-01 8 8185582 8185582 C T SGK223 Missense_Mutation p.G904R 0.25 benign(0.059) TCGA-CK-4951-01 8 8235370 8235370 C T SGK223 Silent p.P183P 0.12 TCGA-CK-4951-01 8 82667645 82667645 G A CHMP4C Missense_Mutation p.E137K 0.11 deleterious(0) probably_damaging(0.92) TCGA-CK-4951-01 8 8561240 8561240 T A CLDN23 3'UTR 0.38 TCGA-CK-4951-01 8 8561276 8561276 T A CLDN23 3'UTR 0.27 TCGA-CK-4951-01 8 87443635 87443635 A - WWP1 Frame_Shift_Del p.R465Efs*11 0.18 TCGA-CK-4951-01 8 8869247 8869247 G A ERI1 Silent p.T161T 0.23 TCGA-CK-4951-01 8 91953126 91953126 G T NECAB1 Missense_Mutation p.R287L 0.29 deleterious(0.03) benign(0.109) TCGA-CK-4951-01 8 94929999 94929999 C T PDP1 Intron 0.39 TCGA-CK-4951-01 8 94935181 94935181 G A PDP1 Silent p.V323V 0.43 TCGA-CK-4951-01 8 95143120 95143120 G A CDH17 Silent p.G756G 0.25 TCGA-CK-4951-01 8 95674784 95674784 G A ESRP1 Splice_Site p.X215_splice 0.32 TCGA-CK-4951-01 8 95892471 95892471 A T CCNE2 3'UTR 0.28 TCGA-CK-4951-01 8 96070100 96070100 T A NDUFAF6 Missense_Mutation p.L313I 0.08 deleterious(0.02) probably_damaging(0.967) TCGA-CK-4951-01 8 96166557 96166557 C G PLEKHF2 Missense_Mutation p.D95E 0.28 tolerated(1) benign(0.004) TCGA-CK-4951-01 8 97156828 97156828 T C GDF6 Missense_Mutation p.Y444C 0.28 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 8 99961742 99961742 C T OSR2 Missense_Mutation p.L188F 0.44 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 100437715 100437715 A G XPA 3'UTR 0.35 TCGA-CK-4951-01 9 100617608 100617608 G A FOXE1 3'UTR 0.26 TCGA-CK-4951-01 9 100862356 100862356 A G TRIM14 Missense_Mutation p.F132L 0.28 tolerated(0.32) benign(0.18) TCGA-CK-4951-01 9 101597626 101597626 A G GALNT12 Missense_Mutation p.E338G 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 104130600 104130600 C A BAAT Missense_Mutation p.E157D 0.25 tolerated(0.39) benign(0.029) TCGA-CK-4951-01 9 104499709 104499709 A G GRIN3A Missense_Mutation p.C185R 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 1056497 1056497 C T DMRT2 Missense_Mutation p.P304S 0.34 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 107547873 107547873 G C ABCA1 Missense_Mutation p.P2150R 0.30 deleterious(0) benign(0.401) TCGA-CK-4951-01 9 108125132 108125132 C T SLC44A1 Missense_Mutation p.R311C 0.31 deleterious(0) probably_damaging(0.961) TCGA-CK-4951-01 9 108268878 108268878 A T FSD1L Missense_Mutation p.Y262F 0.31 deleterious(0.04) possibly_damaging(0.892) TCGA-CK-4951-01 9 111761454 111761454 A T CTNNAL1 Missense_Mutation p.V75D 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 112200464 112200464 C T PTPN3 Missense_Mutation p.D173N 0.36 tolerated(0.51) benign(0.004) TCGA-CK-4951-01 9 112963591 112963591 C T C9orf152 Silent p.T119T 0.27 TCGA-CK-4951-01 9 113170902 113170902 C T SVEP1 Silent p.P2326P 0.23 TCGA-CK-4951-01 9 114134765 114134765 T A KIAA0368 Missense_Mutation p.K1669I 0.19 tolerated(0.14) benign(0.016) TCGA-CK-4951-01 9 114348376 114348376 C T PTGR1 Silent p.T93T 0.36 TCGA-CK-4951-01 9 115200785 115200785 G A HSDL2 Missense_Mutation p.A225T 0.21 deleterious(0.01) benign(0.377) TCGA-CK-4951-01 9 115336551 115336551 G A KIAA1958 Missense_Mutation p.C64Y 0.32 tolerated(0.15) possibly_damaging(0.902) TCGA-CK-4951-01 9 115652467 115652467 G A SLC46A2 Silent p.S165S 0.17 TCGA-CK-4951-01 9 115652536 115652536 C T SLC46A2 Silent p.L142L 0.41 TCGA-CK-4951-01 9 115948601 115948601 C T FKBP15 Missense_Mutation p.A476T 0.31 tolerated(0.24) benign(0.008) TCGA-CK-4951-01 9 116045761 116045761 G A PRPF4 Missense_Mutation p.R219Q 0.27 tolerated(0.51) benign(0.007) TCGA-CK-4951-01 9 116060336 116060336 G A RNF183 Silent p.H43H 0.35 TCGA-CK-4951-01 9 116172388 116172388 G A POLE3 Silent p.A33A 0.27 TCGA-CK-4951-01 9 116357926 116357926 G A RGS3 Missense_Mutation p.E1098K 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 116859625 116859625 A G KIF12 Missense_Mutation p.V63A 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 9 117151 117151 C T FOXD4 Silent p.L323L 0.16 TCGA-CK-4951-01 9 117171 117171 C T FOXD4 Missense_Mutation p.D317N 0.19 tolerated(0.31) benign(0.025) TCGA-CK-4951-01 9 117827170 117827170 G A TNC Silent p.T1081T 0.28 TCGA-CK-4951-01 9 117835974 117835974 C T TNC Missense_Mutation p.R1041K 0.19 tolerated(0.29) benign(0.004) TCGA-CK-4951-01 9 117848847 117848847 A G TNC Missense_Mutation p.V388A 0.27 deleterious(0.03) benign(0.008) TCGA-CK-4951-01 9 117853 117853 C T FOXD4 Silent p.P89P 0.14 TCGA-CK-4951-01 9 117885 117885 G A FOXD4 Missense_Mutation p.P79S 0.14 tolerated(1) benign(0.01) TCGA-CK-4951-01 9 118217 118217 G T FOXD4 5'UTR 0.23 TCGA-CK-4951-01 9 118974066 118974066 G T PAPPA Missense_Mutation p.E591D 0.30 tolerated(0.47) possibly_damaging(0.523) TCGA-CK-4951-01 9 119495738 119495738 C T ASTN2 Missense_Mutation p.V770M 0.38 deleterious(0) unknown(0) TCGA-CK-4951-01 9 123367325 123367325 A T MEGF9 3'UTR 0.44 TCGA-CK-4951-01 9 123367328 123367328 A G MEGF9 3'UTR 0.44 TCGA-CK-4951-01 9 123384946 123384946 G A MEGF9 Silent p.G297G 0.43 TCGA-CK-4951-01 9 123620260 123620260 G A PHF19 Nonsense_Mutation p.Q569* 0.32 TCGA-CK-4951-01 9 123624270 123624270 C T PHF19 Missense_Mutation p.E382K 0.29 tolerated(0.4) benign(0.041) TCGA-CK-4951-01 9 123667381 123667381 G - TRAF1 Frame_Shift_Del p.L390Sfs*12 0.12 TCGA-CK-4951-01 9 123667429 123667429 G A TRAF1 Missense_Mutation p.P374S 0.12 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 123939544 123939544 T - CNTRL 3'UTR 0.27 TCGA-CK-4951-01 9 124132417 124132417 C T STOM Missense_Mutation p.D17N 0.23 tolerated(0.18) benign(0) TCGA-CK-4951-01 9 124132475 124132475 G A STOM 5'UTR 0.16 TCGA-CK-4951-01 9 124522303 124522303 A G DAB2IP Missense_Mutation p.D224G 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-CK-4951-01 9 124532955 124532955 G A DAB2IP Missense_Mutation p.S649N 0.29 tolerated(0.14) benign(0.39) TCGA-CK-4951-01 9 124532989 124532989 G A DAB2IP Silent p.E660E 0.33 TCGA-CK-4951-01 9 124751624 124751624 A G TTLL11 Silent p.C463C 0.29 TCGA-CK-4951-01 9 125423882 125423882 T A OR1L1 5'Flank 0.27 TCGA-CK-4951-01 9 125585438 125585438 G A PDCL Nonsense_Mutation p.Q71* 0.27 TCGA-CK-4951-01 9 125752432 125752432 A G RABGAP1 Missense_Mutation p.D288G 0.42 tolerated(0.08) benign(0) TCGA-CK-4951-01 9 125898691 125898691 C T STRBP Missense_Mutation p.G534D 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 126132533 126132533 C T CRB2 Nonsense_Mutation p.Q401* 0.23 TCGA-CK-4951-01 9 126132932 126132932 C T CRB2 Missense_Mutation p.R534W 0.18 deleterious(0) possibly_damaging(0.898) TCGA-CK-4951-01 9 126133423 126133423 C T CRB2 Missense_Mutation p.P668S 0.29 tolerated(0.29) possibly_damaging(0.641) TCGA-CK-4951-01 9 126144344 126144344 C T DENND1A Silent p.P799P 0.32 TCGA-CK-4951-01 9 126777782 126777782 G A LHX2 Silent p.A235A 0.29 TCGA-CK-4951-01 9 127684068 127684068 A G GOLGA1 Missense_Mutation p.M222T 0.28 tolerated(0.54) benign(0.002) TCGA-CK-4951-01 9 127715132 127715132 A G SCAI Missense_Mutation p.L615P 0.27 deleterious(0) possibly_damaging(0.776) TCGA-CK-4951-01 9 129265561 129265561 C T MVB12B 3'UTR 0.35 TCGA-CK-4951-01 9 129598711 129598711 T - ZBTB43 3'UTR 0.24 TCGA-CK-4951-01 9 130152918 130152918 A T GARNL3 Splice_Site p.X915_splice 0.38 TCGA-CK-4951-01 9 130269308 130269308 G A FAM129B Missense_Mutation p.A686V 0.39 tolerated_low_confidence(0.38) benign(0.005) TCGA-CK-4951-01 9 130474536 130474536 C T C9orf117 Silent p.L349L 0.11 TCGA-CK-4951-01 9 130494878 130494878 G A TOR2A Missense_Mutation p.P229L 0.36 tolerated(0.1) benign(0.003) TCGA-CK-4951-01 9 130513464 130513464 C T SH2D3C Missense_Mutation p.R224H 0.26 tolerated(0.16) probably_damaging(0.971) TCGA-CK-4951-01 9 130550839 130550839 C - CDK9 Frame_Shift_Del p.I210Lfs*66 0.23 TCGA-CK-4951-01 9 130550890 130550890 C T CDK9 Silent p.T224T 0.35 TCGA-CK-4951-01 9 130578348 130578348 G A ENG Intron 0.28 TCGA-CK-4951-01 9 130656917 130656917 G A ST6GALNAC6 Silent p.I57I 0.42 TCGA-CK-4951-01 9 130829037 130829037 C G NAIF1 Missense_Mutation p.G115A 0.36 tolerated_low_confidence(0.22) benign(0.014) TCGA-CK-4951-01 9 130829065 130829065 C T NAIF1 Missense_Mutation p.G106R 0.50 deleterious_low_confidence(0.05) probably_damaging(0.946) TCGA-CK-4951-01 9 130868656 130868656 C A SLC25A25 Silent p.R345R 0.29 TCGA-CK-4951-01 9 130869552 130869552 C T SLC25A25 Silent p.G447G 0.25 TCGA-CK-4951-01 9 130883229 130883229 G T PTGES2 3'UTR 0.33 TCGA-CK-4951-01 9 130928421 130928421 A G CIZ1 3'UTR 0.30 TCGA-CK-4951-01 9 130941180 130941180 G A CIZ1 Missense_Mutation p.H436Y 0.27 tolerated_low_confidence(0.34) benign(0.129) TCGA-CK-4951-01 9 130996314 130996314 G A DNM1 Silent p.P450P 0.26 TCGA-CK-4951-01 9 131050947 131050947 C T SWI5 Silent p.V220V 0.28 TCGA-CK-4951-01 9 131218431 131218431 A G ODF2 5'Flank 0.25 TCGA-CK-4951-01 9 131262672 131262672 A G ODF2 3'UTR 0.44 TCGA-CK-4951-01 9 131343297 131343297 C T SPTAN1 Missense_Mutation p.R474W 0.21 deleterious(0.02) probably_damaging(1) TCGA-CK-4951-01 9 131388869 131388869 G A SPTAN1 Missense_Mutation p.R2160H 0.27 tolerated(0.08) benign(0.021) TCGA-CK-4951-01 9 131389740 131389740 C T SPTAN1 Missense_Mutation p.H2218Y 0.24 tolerated(0.27) possibly_damaging(0.685) TCGA-CK-4951-01 9 131396169 131396169 C G WDR34 Missense_Mutation p.E489Q 0.50 tolerated(0.22) possibly_damaging(0.579) TCGA-CK-4951-01 9 131468086 131468086 G C PKN3 Missense_Mutation p.Q113H 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-CK-4951-01 9 131483750 131483750 G A ZDHHC12 Nonsense_Mutation p.Q172* 0.23 TCGA-CK-4951-01 9 131515696 131515696 G A ZER1 Silent p.L165L 0.30 TCGA-CK-4951-01 9 131708951 131708951 C T DOLK Missense_Mutation p.R211H 0.17 tolerated(0.18) possibly_damaging(0.751) TCGA-CK-4951-01 9 131771467 131771467 G - SH3GLB2 Frame_Shift_Del p.P333Lfs*111 0.24 TCGA-CK-4951-01 9 131811739 131811739 C T FAM73B Missense_Mutation p.T167I 0.32 tolerated(0.18) benign(0.039) TCGA-CK-4951-01 9 131857594 131857594 G A CRAT 3'UTR 0.33 TCGA-CK-4951-01 9 132596018 132596018 G A C9orf78 Intron 0.35 TCGA-CK-4951-01 9 132631272 132631272 C A USP20 Missense_Mutation p.L423I 0.33 tolerated(0.43) benign(0.378) TCGA-CK-4951-01 9 132671263 132671263 C T FNBP1 Missense_Mutation p.D401N 0.35 deleterious(0) benign(0.02) TCGA-CK-4951-01 9 132816238 132816238 C T GPR107 Silent p.S9S 0.39 TCGA-CK-4951-01 9 133511485 133511485 C T FUBP3 Missense_Mutation p.T561M 0.28 deleterious(0.03) possibly_damaging(0.563) TCGA-CK-4951-01 9 133799738 133799738 C T FIBCD1 Missense_Mutation p.V200I 0.32 tolerated(0.11) benign(0.024) TCGA-CK-4951-01 9 133901809 133901809 T G LAMC3 Missense_Mutation p.Y171D 0.33 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 134165667 134165667 C T PPAPDC3 Missense_Mutation p.R95W 0.29 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 134351034 134351034 A T PRRC2B Missense_Mutation p.D1173V 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 134363327 134363327 G A PRRC2B Silent p.S2023S 0.25 TCGA-CK-4951-01 9 134394329 134394329 C T POMT1 Missense_Mutation p.H513Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 135073938 135073938 C A NTNG2 Missense_Mutation p.Q267K 0.37 tolerated(0.4) benign(0.035) TCGA-CK-4951-01 9 135102381 135102381 C T NTNG2 Missense_Mutation p.P335S 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-CK-4951-01 9 135202039 135202039 A T SETX Missense_Mutation p.V1649D 0.30 deleterious(0.02) benign(0.439) TCGA-CK-4951-01 9 135221742 135221742 C T SETX Silent p.L98L 0.33 TCGA-CK-4951-01 9 135224692 135224692 C G SETX Missense_Mutation p.E42Q 0.19 deleterious(0.03) probably_damaging(0.979) TCGA-CK-4951-01 9 135263530 135263530 C T TTF1 Missense_Mutation p.E770K 0.26 tolerated(0.36) benign(0.056) TCGA-CK-4951-01 9 135285794 135285794 G A C9orf171 Missense_Mutation p.E46K 0.39 deleterious(0.01) benign(0.381) TCGA-CK-4951-01 9 135462731 135462731 A G BARHL1 Missense_Mutation p.D161G 0.42 tolerated(0.1) benign(0.176) TCGA-CK-4951-01 9 135537950 135537950 C T DDX31 Missense_Mutation p.A175T 0.23 tolerated(0.39) benign(0.001) TCGA-CK-4951-01 9 135764062 135764062 C T C9orf9 Intron 0.25 TCGA-CK-4951-01 9 135975657 135975657 C T RALGDS Missense_Mutation p.R856Q 0.32 tolerated(0.09) unknown(0) TCGA-CK-4951-01 9 135976900 135976900 G A RALGDS Intron 0.45 TCGA-CK-4951-01 9 135977484 135977484 G A RALGDS Silent p.S684S 0.16 TCGA-CK-4951-01 9 135982595 135982595 G A RALGDS Silent p.I430I 0.17 TCGA-CK-4951-01 9 135984244 135984244 G A RALGDS Silent p.S198S 0.48 TCGA-CK-4951-01 9 136202884 136202884 C T SURF6 Missense_Mutation p.R29H 0.18 deleterious(0.01) possibly_damaging(0.744) TCGA-CK-4951-01 9 136208720 136208720 A T MED22 Intron 0.36 TCGA-CK-4951-01 9 136213400 136213400 C T MED22 Missense_Mutation p.A40T 0.25 deleterious(0.03) probably_damaging(0.934) TCGA-CK-4951-01 9 136213421 136213421 A G MED22 Missense_Mutation p.F33L 0.27 deleterious(0.02) probably_damaging(0.951) TCGA-CK-4951-01 9 136213432 136213432 A T MED22 Missense_Mutation p.I29N 0.28 deleterious(0) possibly_damaging(0.478) TCGA-CK-4951-01 9 136220911 136220911 C T SURF1 Intron 0.42 TCGA-CK-4951-01 9 136320454 136320454 C T ADAMTS13 Silent p.C1099C 0.35 TCGA-CK-4951-01 9 136403509 136403509 C - ADAMTSL2 Frame_Shift_Del p.T91Rfs*126 0.27 TCGA-CK-4951-01 9 136406082 136406082 C T ADAMTSL2 Missense_Mutation p.T214I 0.35 tolerated(0.4) benign(0.055) TCGA-CK-4951-01 9 136917442 136917442 A T BRD3 Missense_Mutation p.Y113N 0.41 deleterious(0) benign(0.423) TCGA-CK-4951-01 9 137019633 137019633 G T WDR5 Missense_Mutation p.G226V 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 137021693 137021693 A T WDR5 Silent p.V294V 0.35 TCGA-CK-4951-01 9 137620520 137620520 C T COL5A1 Missense_Mutation p.T264M 0.32 probably_damaging(0.932) TCGA-CK-4951-01 9 138011583 138011583 C T OLFM1 Silent p.A321A 0.23 TCGA-CK-4951-01 9 138236105 138236105 G A C9orf62 Missense_Mutation p.R104K 0.34 deleterious_low_confidence(0) benign(0.002) TCGA-CK-4951-01 9 138395457 138395457 G A MRPS2 Silent p.T123T 0.35 TCGA-CK-4951-01 9 138516397 138516397 G A GLT6D1 Missense_Mutation p.P126L 0.32 tolerated(1) benign(0.004) TCGA-CK-4951-01 9 138664684 138664684 C T KCNT1 Missense_Mutation p.A711V 0.25 deleterious(0.01) benign(0.409) TCGA-CK-4951-01 9 138713499 138713499 G A CAMSAP1 Missense_Mutation p.S1003F 0.24 deleterious(0) possibly_damaging(0.886) TCGA-CK-4951-01 9 138825310 138825310 T A UBAC1 Missense_Mutation p.D385V 0.29 deleterious(0) probably_damaging(0.912) TCGA-CK-4951-01 9 139103209 139103209 C A QSOX2 Nonsense_Mutation p.E484* 0.25 TCGA-CK-4951-01 9 139235712 139235712 G A GPSM1 Intron 0.25 TCGA-CK-4951-01 9 139244090 139244090 G A GPSM1 Missense_Mutation p.D444N 0.33 tolerated(0.46) benign(0.02) TCGA-CK-4951-01 9 139244095 139244095 G A GPSM1 Silent p.S445S 0.26 TCGA-CK-4951-01 9 139258600 139258600 G T CARD9 3'UTR 0.41 TCGA-CK-4951-01 9 139306642 139306642 A G PMPCA Missense_Mutation p.T89A 0.31 deleterious(0) possibly_damaging(0.856) TCGA-CK-4951-01 9 139313531 139313531 T A PMPCA Missense_Mutation p.F412L 0.17 tolerated(0.45) benign(0.063) TCGA-CK-4951-01 9 139333561 139333561 T A INPP5E Missense_Mutation p.E104V 0.50 tolerated_low_confidence(0.21) benign(0.013) TCGA-CK-4951-01 9 139342831 139342831 G - SEC16A Intron 0.33 TCGA-CK-4951-01 9 139358014 139358014 C A SEC16A Missense_Mutation p.Q1516H 0.09 deleterious(0.03) possibly_damaging(0.743) TCGA-CK-4951-01 9 139371056 139371056 C T SEC16A Missense_Mutation p.A338T 0.35 tolerated(0.51) benign(0.008) TCGA-CK-4951-01 9 139391738 139391738 G A NOTCH1 Silent p.P2151P 0.29 TCGA-CK-4951-01 9 139396824 139396824 G A NOTCH1 Missense_Mutation p.R1762W 0.29 deleterious(0) probably_damaging(0.959) TCGA-CK-4951-01 9 139396883 139396883 G A NOTCH1 Missense_Mutation p.A1742V 0.25 tolerated(0.48) benign(0.005) TCGA-CK-4951-01 9 139407528 139407528 G A NOTCH1 Silent p.G804G 0.28 TCGA-CK-4951-01 9 139732359 139732359 A T RABL6 Missense_Mutation p.E392V 0.35 deleterious(0) possibly_damaging(0.607) TCGA-CK-4951-01 9 139735084 139735084 C T RABL6 3'UTR 0.18 TCGA-CK-4951-01 9 139735303 139735303 G T RABL6 3'UTR 0.32 TCGA-CK-4951-01 9 139749786 139749786 C T MAMDC4 Silent p.V426V 0.40 TCGA-CK-4951-01 9 139755140 139755140 C T MAMDC4 3'UTR 0.23 TCGA-CK-4951-01 9 139793277 139793277 G A TRAF2 Missense_Mutation p.E29K 0.39 deleterious(0) possibly_damaging(0.858) TCGA-CK-4951-01 9 139838449 139838449 G A FBXW5 Silent p.A29A 0.32 TCGA-CK-4951-01 9 139838453 139838453 G A FBXW5 Missense_Mutation p.A28V 0.33 tolerated(0.3) possibly_damaging(0.677) TCGA-CK-4951-01 9 139846825 139846825 G C LCN12 Missense_Mutation p.V16L 0.30 tolerated(0.15) unknown(0) TCGA-CK-4951-01 9 139871998 139871998 C T PTGDS 5'UTR 0.35 TCGA-CK-4951-01 9 139879179 139879179 G A LCNL1 Missense_Mutation p.D71N 0.27 tolerated(0.05) benign(0.191) TCGA-CK-4951-01 9 139903041 139903041 T A ABCA2 Missense_Mutation p.N2368Y 0.28 deleterious(0.01) benign(0.031) TCGA-CK-4951-01 9 139905107 139905107 C T ABCA2 Missense_Mutation p.D2047N 0.29 tolerated(0.14) benign(0.036) TCGA-CK-4951-01 9 139907184 139907184 G A ABCA2 Silent p.S1687S 0.21 TCGA-CK-4951-01 9 139907347 139907347 C T ABCA2 Missense_Mutation p.R1633H 0.19 tolerated(0.38) benign(0.005) TCGA-CK-4951-01 9 139909439 139909439 C T ABCA2 Missense_Mutation p.D1270N 0.21 tolerated(0.07) benign(0.029) TCGA-CK-4951-01 9 139910181 139910181 C T ABCA2 Missense_Mutation p.V1154M 0.31 deleterious(0) probably_damaging(0.993) TCGA-CK-4951-01 9 139915926 139915926 T A ABCA2 Missense_Mutation p.Q272L 0.43 tolerated_low_confidence(0.27) benign(0.076) TCGA-CK-4951-01 9 139925786 139925786 G C FUT7 Silent p.G135G 0.33 TCGA-CK-4951-01 9 139929560 139929560 G T C9orf139 3'UTR 0.30 TCGA-CK-4951-01 9 139959423 139959423 G A SAPCD2 Silent p.P316P 0.42 TCGA-CK-4951-01 9 139973753 139973753 C A UAP1L1 Missense_Mutation p.Q297K 0.27 tolerated(0.65) benign(0.013) TCGA-CK-4951-01 9 140040257 140040257 A G GRIN1 Missense_Mutation p.Y158C 0.29 deleterious(0) possibly_damaging(0.755) TCGA-CK-4951-01 9 140051427 140051427 C T GRIN1 Silent p.T323T 0.22 TCGA-CK-4951-01 9 140051435 140051435 C T GRIN1 Missense_Mutation p.P326L 0.26 deleterious(0) probably_damaging(0.959) TCGA-CK-4951-01 9 140079469 140079469 G T ANAPC2 Missense_Mutation p.P315H 0.40 deleterious(0.03) benign(0.062) TCGA-CK-4951-01 9 140082115 140082115 C T ANAPC2 Silent p.Q186Q 0.29 TCGA-CK-4951-01 9 140084398 140084398 C T SSNA1 3'UTR 0.31 TCGA-CK-4951-01 9 140086518 140086518 G A TPRN 3'UTR 0.50 TCGA-CK-4951-01 9 140094190 140094190 G C TPRN Missense_Mutation p.A325G 0.36 deleterious(0) benign(0.377) TCGA-CK-4951-01 9 140099722 140099722 C T TMEM203 Missense_Mutation p.V49M 0.43 tolerated(0.1) probably_damaging(0.952) TCGA-CK-4951-01 9 140099730 140099730 C T TMEM203 Nonsense_Mutation p.W46* 0.46 TCGA-CK-4951-01 9 140115402 140115402 G A RNF208 Missense_Mutation p.A88V 0.27 tolerated_low_confidence(0.19) benign(0.002) TCGA-CK-4951-01 9 140139637 140139637 G C FAM166A Missense_Mutation p.P186A 0.16 tolerated(0.07) benign(0.156) TCGA-CK-4951-01 9 140146335 140146335 C T C9orf173 Silent p.L86L 0.34 TCGA-CK-4951-01 9 140173641 140173641 C G TOR4A Missense_Mutation p.A167G 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-CK-4951-01 9 140174312 140174312 G A TOR4A Missense_Mutation p.A391T 0.18 deleterious(0.04) benign(0.394) TCGA-CK-4951-01 9 140174488 140174488 G T TOR4A 3'UTR 0.32 TCGA-CK-4951-01 9 140175693 140175693 G A TOR4A 3'UTR 0.32 TCGA-CK-4951-01 9 140176997 140176997 C T TOR4A 3'UTR 0.38 TCGA-CK-4951-01 9 140177032 140177032 G A TOR4A 3'UTR 0.38 TCGA-CK-4951-01 9 140325765 140325765 G C NOXA1 Missense_Mutation p.R259P 0.29 tolerated(0.32) benign(0.113) TCGA-CK-4951-01 9 140344472 140344472 C T NSMF Nonsense_Mutation p.W441* 0.16 TCGA-CK-4951-01 9 140356697 140356697 G A PNPLA7 Silent p.C1193C 0.35 TCGA-CK-4951-01 9 140357879 140357879 T C PNPLA7 Missense_Mutation p.N1111D 0.19 deleterious(0) probably_damaging(0.93) TCGA-CK-4951-01 9 140372489 140372489 G A PNPLA7 Missense_Mutation p.A960V 0.32 deleterious(0) possibly_damaging(0.657) TCGA-CK-4951-01 9 140417187 140417187 C T PNPLA7 Silent p.V290V 0.16 TCGA-CK-4951-01 9 140611323 140611323 G A EHMT1 Missense_Mutation p.A111T 0.42 tolerated_low_confidence(0.05) benign(0.004) TCGA-CK-4951-01 9 140693324 140693324 C T EHMT1 Silent p.V855V 0.23 TCGA-CK-4951-01 9 140695344 140695344 T C EHMT1 Missense_Mutation p.W874R 0.09 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 15433575 15433575 C T SNAPC3 Missense_Mutation p.R140W 0.26 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 9 16419344 16419344 G A BNC2 Silent p.D981D 0.39 TCGA-CK-4951-01 9 16870762 16870762 C T BNC2 5'Flank 0.23 TCGA-CK-4951-01 9 17795753 17795753 G T SH3GL2 3'UTR 0.25 TCGA-CK-4951-01 9 18906862 18906862 C - ADAMTSL1 Frame_Shift_Del p.R1713Gfs*28 0.17 TCGA-CK-4951-01 9 20781908 20781908 T C FOCAD Missense_Mutation p.Y393H 0.39 tolerated(0.54) benign(0.001) TCGA-CK-4951-01 9 21140861 21140861 A T IFNW1 3'UTR 0.39 TCGA-CK-4951-01 9 21166248 21166248 A T IFNA21 Missense_Mutation p.C122S 0.09 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 21187552 21187552 A T IFNA4 5'UTR 0.27 TCGA-CK-4951-01 9 21367933 21367933 T A IFNA13 Missense_Mutation p.D26V 0.36 deleterious(0.01) benign(0.409) TCGA-CK-4951-01 9 215310 215310 G A C9orf66 Silent p.G29G 0.23 TCGA-CK-4951-01 9 23701401 23701401 A G ELAVL2 Missense_Mutation p.L230P 0.29 deleterious(0.03) benign(0.003) TCGA-CK-4951-01 9 23704954 23704954 C T ELAVL2 Missense_Mutation p.R150H 0.24 tolerated(0.05) benign(0.007) TCGA-CK-4951-01 9 32630105 32630105 C A TAF1L Nonsense_Mutation p.G1825* 0.31 TCGA-CK-4951-01 9 33030468 33030468 G A DNAJA1 Missense_Mutation p.C149Y 0.16 tolerated(0.11) benign(0.023) TCGA-CK-4951-01 9 33068870 33068870 G A SMU1 Silent p.G151G 0.30 TCGA-CK-4951-01 9 33301309 33301309 G A NFX1 Missense_Mutation p.C361Y 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 33465871 33465871 C T NOL6 Missense_Mutation p.V797M 0.33 deleterious(0) probably_damaging(0.934) TCGA-CK-4951-01 9 33466102 33466102 G A NOL6 Silent p.C777C 0.39 TCGA-CK-4951-01 9 33469244 33469244 G A NOL6 Missense_Mutation p.R275C 0.15 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 34371132 34371132 C T KIAA1161 Missense_Mutation p.A570T 0.28 tolerated(0.07) probably_damaging(1) TCGA-CK-4951-01 9 34655303 34655303 G - IL11RA Frame_Shift_Del p.G31Afs*14 0.22 TCGA-CK-4951-01 9 34657047 34657047 C A IL11RA Missense_Mutation p.P116H 0.36 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 34728066 34728066 G T FAM205A Silent p.S68S 0.26 TCGA-CK-4951-01 9 35042988 35042988 C T C9orf131 Missense_Mutation p.S121F 0.25 tolerated(0.35) probably_damaging(0.998) TCGA-CK-4951-01 9 35074117 35074117 A G FANCG Silent p.S619S 0.41 TCGA-CK-4951-01 9 35090495 35090495 G A PIGO Missense_Mutation p.A941V 0.13 tolerated(0.56) benign(0.129) TCGA-CK-4951-01 9 35093075 35093075 G C PIGO Missense_Mutation p.H357Q 0.33 tolerated(0.32) benign(0.001) TCGA-CK-4951-01 9 35295797 35295797 G A UNC13B Missense_Mutation p.A211T 0.38 tolerated_low_confidence(0.07) benign(0.296) TCGA-CK-4951-01 9 35376244 35376244 C T UNC13B Missense_Mutation p.R530W 0.19 deleterious(0) probably_damaging(0.997) TCGA-CK-4951-01 9 35384257 35384257 A G UNC13B Silent p.V858V 0.16 TCGA-CK-4951-01 9 35560091 35560091 C T RUSC2 Missense_Mutation p.L1152F 0.15 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 35560093 35560093 C T RUSC2 Silent p.L1152L 0.15 TCGA-CK-4951-01 9 35658687 35658687 C T CCDC107 Missense_Mutation p.A74V 0.46 tolerated(0.11) possibly_damaging(0.776) TCGA-CK-4951-01 9 35665058 35665058 A G ARHGEF39 Missense_Mutation p.Y37H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 35689772 35689772 T G TPM2 Missense_Mutation p.K15Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 35704001 35704001 T A TLN1 Missense_Mutation p.D2073V 0.43 deleterious(0) probably_damaging(0.989) TCGA-CK-4951-01 9 35716391 35716391 G A TLN1 Missense_Mutation p.A874V 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-CK-4951-01 9 35739639 35739639 A T GBA2 Missense_Mutation p.F523Y 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-CK-4951-01 9 35818967 35818967 G A FAM221B Missense_Mutation p.A364V 0.40 tolerated(0.15) possibly_damaging(0.48) TCGA-CK-4951-01 9 35841725 35841725 C T TMEM8B 5'UTR 0.27 TCGA-CK-4951-01 9 35847115 35847115 G A TMEM8B Intron 0.35 TCGA-CK-4951-01 9 36108153 36108153 A T RECK Missense_Mutation p.K586I 0.29 deleterious(0.01) benign(0.36) TCGA-CK-4951-01 9 37020632 37020632 C T PAX5 Splice_Site p.X71_splice 0.29 TCGA-CK-4951-01 9 37034105 37034105 T C PAX5 5'Flank 0.29 TCGA-CK-4951-01 9 37518382 37518382 T A FBXO10 Missense_Mutation p.I752F 0.34 deleterious(0) probably_damaging(0.951) TCGA-CK-4951-01 9 38577241 38577241 T C ANKRD18A Silent p.K850K 0.10 TCGA-CK-4951-01 9 38596331 38596331 T C ANKRD18A Missense_Mutation p.M336V 0.29 tolerated(0.28) benign(0.003) TCGA-CK-4951-01 9 39357799 39357800 - T SPATA31A1 Frame_Shift_Ins p.S99Ffs*12 0.31 TCGA-CK-4951-01 9 39887050 39887051 - T SPATA31A2 Frame_Shift_Ins p.S99Ffs*12 0.29 TCGA-CK-4951-01 9 414885 414885 G A DOCK8 Missense_Mutation p.A1212T 0.21 deleterious(0.01) possibly_damaging(0.907) TCGA-CK-4951-01 9 43629302 43629302 G A SPATA31A6 Missense_Mutation p.R70W 0.23 deleterious(0.04) benign(0.004) TCGA-CK-4951-01 9 4490619 4490619 C T SLC1A1 5'UTR 0.26 TCGA-CK-4951-01 9 4566049 4566049 A T SLC1A1 Missense_Mutation p.N148I 0.29 deleterious(0) probably_damaging(0.985) TCGA-CK-4951-01 9 4625439 4625439 G A SPATA6L Missense_Mutation p.A128V 0.28 tolerated(0.36) benign(0.112) TCGA-CK-4951-01 9 6506041 6506041 A G UHRF2 Silent p.L757L 0.31 TCGA-CK-4951-01 9 6506051 6506051 T G UHRF2 Missense_Mutation p.F761V 0.30 deleterious(0) probably_damaging(0.985) TCGA-CK-4951-01 9 6604756 6604756 A G GLDC Missense_Mutation p.L297S 0.14 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 66553622 66553622 C T RP11-262H14.3 RNA 0.11 TCGA-CK-4951-01 9 6720880 6720880 C A RP11-390F4.3 RNA 0.40 TCGA-CK-4951-01 9 70919350 70919350 G A FOXD4L3 3'UTR 0.26 TCGA-CK-4951-01 9 70919926 70919926 T C FOXD4L3 3'UTR 0.20 TCGA-CK-4951-01 9 71396118 71396118 T C FAM122A 3'UTR 0.34 TCGA-CK-4951-01 9 71628409 71628409 G A PRKACG Silent p.C200C 0.15 TCGA-CK-4951-01 9 72131282 72131282 C T APBA1 Missense_Mutation p.S282N 0.47 deleterious_low_confidence(0.02) benign(0.013) TCGA-CK-4951-01 9 72520958 72520958 T C C9orf135 Missense_Mutation p.I199T 0.33 tolerated(0.11) benign(0.349) TCGA-CK-4951-01 9 73028014 73028014 G A KLF9 Missense_Mutation p.P89L 0.37 tolerated(0.66) benign(0.011) TCGA-CK-4951-01 9 74587744 74587744 C T C9orf85 Missense_Mutation p.H154Y 0.33 deleterious_low_confidence(0.05) benign(0.009) TCGA-CK-4951-01 9 77502952 77502954 AAG - TRPM6 5'UTR 0.33 TCGA-CK-4951-01 9 78774035 78774035 G A PCSK5 Missense_Mutation p.A523T 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 9 79117617 79117617 G A GCNT1 Missense_Mutation p.R107H 0.29 deleterious(0.01) benign(0.058) TCGA-CK-4951-01 9 79320498 79320498 A G PRUNE2 Missense_Mutation p.V2231A 0.22 tolerated(0.2) benign(0.01) TCGA-CK-4951-01 9 79890462 79890462 C T VPS13A Missense_Mutation p.P854L 0.35 tolerated(0.74) benign(0.001) TCGA-CK-4951-01 9 79934492 79934494 ATT - VPS13A In_Frame_Del p.Y1775del 0.34 TCGA-CK-4951-01 9 80912081 80912081 C T PSAT1 5'UTR 0.63 TCGA-CK-4951-01 9 84534372 84534372 C G SPATA31D5P RNA 0.20 TCGA-CK-4951-01 9 85613343 85613343 T A RASEF Missense_Mutation p.K581I 0.41 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 9 85615852 85615852 C A RASEF Missense_Mutation p.G466W 0.27 tolerated(0.16) possibly_damaging(0.554) TCGA-CK-4951-01 9 86559879 86559879 C T C9orf64 Missense_Mutation p.R208Q 0.15 deleterious(0) probably_damaging(0.992) TCGA-CK-4951-01 9 86905087 86905087 A G SLC28A3 Silent p.G377G 0.30 TCGA-CK-4951-01 9 87339208 87339208 A T NTRK2 Missense_Mutation p.I264F 0.24 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 9 88650486 88650486 G A GOLM1 Missense_Mutation p.P271L 0.57 tolerated(0.15) benign(0) TCGA-CK-4951-01 9 90296400 90296400 C T DAPK1 Missense_Mutation p.H695Y 0.32 tolerated(0.07) benign(0.004) TCGA-CK-4951-01 9 91150432 91150432 T C NXNL2 Missense_Mutation p.V28A 0.15 deleterious(0.03) probably_damaging(0.948) TCGA-CK-4951-01 9 93376037 93376037 A G DIRAS2 Silent p.L25L 0.43 TCGA-CK-4951-01 9 94486973 94486973 C T ROR2 Silent p.A601A 0.21 TCGA-CK-4951-01 9 94493220 94493220 G A ROR2 Silent p.R385R 0.43 TCGA-CK-4951-01 9 95480976 95480976 G C BICD2 Missense_Mutation p.L651V 0.35 tolerated(0.1) possibly_damaging(0.873) TCGA-CK-4951-01 9 95481691 95481691 G A BICD2 Silent p.N412N 0.29 TCGA-CK-4951-01 9 95572023 95572023 G - ANKRD19P RNA 0.22 TCGA-CK-4951-01 9 96080702 96080702 C T C9orf129 Missense_Mutation p.R190H 0.41 tolerated_low_confidence(0.2) benign(0.002) TCGA-CK-4951-01 9 96214611 96214611 C T FAM120A Silent p.F138F 0.20 TCGA-CK-4951-01 9 96398732 96398732 A G PHF2 Missense_Mutation p.Q75R 0.30 tolerated(0.12) unknown(0) TCGA-CK-4951-01 9 96860618 96860618 C T PTPDC1 Silent p.G588G 0.35 TCGA-CK-4951-01 9 96860792 96860792 C T PTPDC1 Silent p.A646A 0.39 TCGA-CK-4951-01 9 97321243 97321243 G A FBP2 Nonsense_Mutation p.Q333* 0.44 TCGA-CK-4951-01 9 98231176 98231176 C T PTCH1 Missense_Mutation p.E703K 0.36 tolerated(0.36) benign(0.139) TCGA-CK-4951-01 9 99404011 99404011 C A AAED1 3'UTR 0.35 TCGA-CK-4951-01 9 99521778 99521778 G A ZNF510 Missense_Mutation p.S445L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4951-01 X 100356144 100356144 G A CENPI Missense_Mutation p.A29T 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.575) TCGA-CK-4951-01 X 10085643 10085643 C T WWC3 Missense_Mutation p.A515V 0.45 tolerated(0.32) benign(0.008) TCGA-CK-4951-01 X 101096503 101096503 C T NXF5 Missense_Mutation p.A90T 0.48 tolerated(0.47) possibly_damaging(0.491) TCGA-CK-4951-01 X 101913321 101913322 TA - GPRASP1 3'UTR 0.31 TCGA-CK-4951-01 X 101913799 101913799 G T GPRASP1 3'UTR 0.24 TCGA-CK-4951-01 X 102192384 102192384 G - RAB40AL Frame_Shift_Del p.G48Efs*16 0.35 TCGA-CK-4951-01 X 102931487 102931487 C T MORF4L2 Missense_Mutation p.A157T 0.49 tolerated(0.11) benign(0.009) TCGA-CK-4951-01 X 103044274 103044274 T A PLP1 Missense_Mutation p.F237I 0.27 deleterious(0) possibly_damaging(0.873) TCGA-CK-4951-01 X 103294700 103294700 G A H2BFM Missense_Mutation p.G53R 0.33 tolerated(0.67) benign(0.008) TCGA-CK-4951-01 X 103295416 103295416 G A H2BFM Nonsense_Mutation p.W150* 0.06 TCGA-CK-4951-01 X 106045977 106045977 C A TBC1D8B 5'UTR 0.17 TCGA-CK-4951-01 X 106097467 106097467 C T TBC1D8B Missense_Mutation p.R765C 0.23 deleterious(0) probably_damaging(0.995) TCGA-CK-4951-01 X 106172095 106172095 C T CLDN2 Nonsense_Mutation p.Q213* 0.56 TCGA-CK-4951-01 X 106845451 106845451 C T FRMPD3 Silent p.R1427R 0.30 TCGA-CK-4951-01 X 107084402 107084402 G A MID2 Silent p.T169T 0.23 TCGA-CK-4951-01 X 107414057 107414057 C A COL4A6 Missense_Mutation p.G1124V 0.18 probably_damaging(1) TCGA-CK-4951-01 X 107868980 107868980 G A COL4A5 Missense_Mutation p.G1021E 0.27 unknown(0) TCGA-CK-4951-01 X 108647669 108647669 T A GUCY2F Silent p.L671L 0.49 TCGA-CK-4951-01 X 108906630 108906630 G A ACSL4 Silent p.G505G 0.23 TCGA-CK-4951-01 X 111700269 111700269 G T ZCCHC16 3'UTR 0.08 TCGA-CK-4951-01 X 11206891 11206891 G A ARHGAP6 Missense_Mutation p.T345M 0.24 deleterious(0.05) benign(0.068) TCGA-CK-4951-01 X 114082621 114082621 T C HTR2C Silent p.V135V 0.20 TCGA-CK-4951-01 X 114141678 114141678 T A HTR2C Silent p.V359V 0.19 TCGA-CK-4951-01 X 114142138 114142138 T A HTR2C 3'UTR 0.33 TCGA-CK-4951-01 X 114399969 114399969 T - LRCH2 Frame_Shift_Del p.R452Dfs*16 0.31 TCGA-CK-4951-01 X 114425290 114425290 G A RBMXL3 Missense_Mutation p.R429H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-CK-4951-01 X 114864175 114864175 G A PLS3 Nonsense_Mutation p.W132* 0.07 TCGA-CK-4951-01 X 117480451 117480451 C T WDR44 5'UTR 0.22 TCGA-CK-4951-01 X 117700584 117700584 T A DOCK11 Missense_Mutation p.L307M 0.22 deleterious(0.01) possibly_damaging(0.641) TCGA-CK-4951-01 X 117883618 117883618 T C IL13RA1 Intron 0.22 TCGA-CK-4951-01 X 118227658 118227658 G A KIAA1210 Silent p.N485N 0.25 TCGA-CK-4951-01 X 118673573 118673573 A T CXorf56 3'UTR 0.47 TCGA-CK-4951-01 X 118809559 118809559 T A SEPT6 Nonsense_Mutation p.K35* 0.17 TCGA-CK-4951-01 X 118971992 118971992 C T UPF3B Missense_Mutation p.D344N 0.12 tolerated(0.07) benign(0.125) TCGA-CK-4951-01 X 119005622 119005622 C T RNF113A 5'UTR 0.15 TCGA-CK-4951-01 X 119391561 119391561 T A ZBTB33 3'UTR 0.28 TCGA-CK-4951-01 X 119445139 119445139 C T TMEM255A Missense_Mutation p.R9Q 0.49 tolerated(0.78) benign(0.014) TCGA-CK-4951-01 X 119676888 119676888 C T CUL4B Silent p.Q437Q 0.52 TCGA-CK-4951-01 X 119693992 119693992 A T CUL4B Missense_Mutation p.F186I 0.29 tolerated(0.35) benign(0.01) TCGA-CK-4951-01 X 122616723 122616723 C T GRIA3 Missense_Mutation p.A838V 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 X 123195629 123195629 G C STAG2 Missense_Mutation p.D515H 0.18 deleterious(0) probably_damaging(0.94) TCGA-CK-4951-01 X 125955139 125955139 C A CXorf64 Missense_Mutation p.P173H 0.26 deleterious(0) benign(0.176) TCGA-CK-4951-01 X 128691347 128691347 G A OCRL Missense_Mutation p.R95H 0.50 tolerated(0.21) benign(0) TCGA-CK-4951-01 X 128724325 128724325 G A OCRL 3'UTR 0.48 TCGA-CK-4951-01 X 128887209 128887209 C T XPNPEP2 Silent p.L364L 0.25 TCGA-CK-4951-01 X 128926336 128926336 G A SASH3 Missense_Mutation p.G159S 0.10 tolerated(0.59) benign(0) TCGA-CK-4951-01 X 128927065 128927065 A G SASH3 Missense_Mutation p.Q301R 0.20 deleterious(0) possibly_damaging(0.771) TCGA-CK-4951-01 X 129149427 129149427 C T BCORL1 Silent p.G893G 0.11 TCGA-CK-4951-01 X 129149437 129149437 C T BCORL1 Missense_Mutation p.P897S 0.12 benign(0.004) TCGA-CK-4951-01 X 129215365 129215365 C T ELF4 5'UTR 0.28 TCGA-CK-4951-01 X 129271265 129271265 C A AIFM1 Intron 0.28 TCGA-CK-4951-01 X 129318384 129318384 C T RAB33A Silent p.L128L 0.47 TCGA-CK-4951-01 X 12940244 12940244 C T TLR8 Missense_Mutation p.R1029W 0.23 deleterious(0.03) probably_damaging(0.915) TCGA-CK-4951-01 X 129518637 129518637 C T GPR119 Missense_Mutation p.R262Q 0.17 tolerated(0.17) benign(0.003) TCGA-CK-4951-01 X 130217875 130217875 C T ARHGAP36 Missense_Mutation p.R163W 0.45 tolerated(0.08) probably_damaging(0.999) TCGA-CK-4951-01 X 131206380 131206380 G A MST4 Silent p.Q339Q 0.44 TCGA-CK-4951-01 X 133119446 133119446 C G GPC3 Missense_Mutation p.V11L 0.21 tolerated_low_confidence(0.76) benign(0.002) TCGA-CK-4951-01 X 134125954 134125954 A T SMIM10 3'UTR 0.50 TCGA-CK-4951-01 X 134156378 134156378 C T FAM127C Missense_Mutation p.D38N 0.42 tolerated(0.24) benign(0.287) TCGA-CK-4951-01 X 134166829 134166829 G A FAM127A 3'UTR 0.22 TCGA-CK-4951-01 X 134166889 134166889 C G FAM127A 3'UTR 0.47 TCGA-CK-4951-01 X 134428062 134428062 G A ZNF75D Missense_Mutation p.A2V 0.21 deleterious(0.03) benign(0) TCGA-CK-4951-01 X 135443626 135443626 G A GPR112 Missense_Mutation p.C2386Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-CK-4951-01 X 13682063 13682063 T A TCEANC 3'UTR 0.23 TCGA-CK-4951-01 X 13734686 13734686 C T TRAPPC2 Missense_Mutation p.E103K 0.42 tolerated(0.18) benign(0.429) TCGA-CK-4951-01 X 137717616 137717616 A G FGF13 Splice_Site p.X211_splice 0.25 TCGA-CK-4951-01 X 137793096 137793096 C T FGF13 Intron 0.30 TCGA-CK-4951-01 X 138642922 138642922 A C F9 Missense_Mutation p.D249A 0.24 tolerated(0.57) benign(0.001) TCGA-CK-4951-01 X 14027241 14027241 C T GEMIN8 Missense_Mutation p.A174T 0.19 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 X 140993325 140993325 C T MAGEC1 Silent p.D45D 0.59 TCGA-CK-4951-01 X 141291483 141291483 C A MAGEC2 Missense_Mutation p.Q97H 0.70 tolerated(0.06) probably_damaging(0.934) TCGA-CK-4951-01 X 1414319 1414319 G A CSF2RA Splice_Site p.X261_splice 0.07 TCGA-CK-4951-01 X 1424586 1424586 G A CSF2RA Intron 0.05 TCGA-CK-4951-01 X 144906525 144906525 C A SLITRK2 3'UTR 0.24 TCGA-CK-4951-01 X 147010287 147010287 T C FMR1 Silent p.H127H 0.23 TCGA-CK-4951-01 X 147024828 147024828 G A FMR1 Missense_Mutation p.G485S 0.26 deleterious(0.02) probably_damaging(0.938) TCGA-CK-4951-01 X 147030500 147030500 A T FMR1 3'UTR 0.30 TCGA-CK-4951-01 X 148035109 148035109 G A AFF2 Splice_Site p.X466_splice 0.22 TCGA-CK-4951-01 X 148607429 148607429 G A IDS Intron 0.24 TCGA-CK-4951-01 X 148690347 148690347 G A TMEM185A Silent p.C130C 0.21 TCGA-CK-4951-01 X 149671782 149671782 C T MAMLD1 Intron 0.29 TCGA-CK-4951-01 X 149899016 149899016 A T MTMR1 Missense_Mutation p.Y218F 0.22 tolerated(0.25) benign(0.02) TCGA-CK-4951-01 X 149937447 149937447 G - CD99L2 3'UTR 0.30 TCGA-CK-4951-01 X 151869460 151869460 G - MAGEA6 Frame_Shift_Del p.E52Rfs*24 0.18 TCGA-CK-4951-01 X 151870315 151870315 G - MAGEA6 3'UTR 0.18 TCGA-CK-4951-01 X 151900718 151900718 G A MAGEA12 Missense_Mutation p.A28V 0.25 tolerated(0.22) benign(0.053) TCGA-CK-4951-01 X 152018954 152018954 T A NSDHL Missense_Mutation p.L85H 0.22 deleterious(0) probably_damaging(0.991) TCGA-CK-4951-01 X 152034430 152034431 TC ACA NSDHL Frame_Shift_Ins p.F204Yfs*67 0.19 TCGA-CK-4951-01 X 152771529 152771529 G A BGN Missense_Mutation p.C187Y 0.55 deleterious(0.01) probably_damaging(0.988) TCGA-CK-4951-01 X 152835118 152835118 C T ATP2B3 Intron 0.25 TCGA-CK-4951-01 X 152990927 152990927 G A ABCD1 Missense_Mutation p.R69Q 0.46 tolerated(0.17) benign(0.015) TCGA-CK-4951-01 X 152991032 152991032 G A ABCD1 Missense_Mutation p.R104H 0.49 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 X 152991080 152991080 G A ABCD1 Missense_Mutation p.R120H 0.47 deleterious(0) probably_damaging(0.932) TCGA-CK-4951-01 X 153005627 153005627 T C ABCD1 Missense_Mutation p.W524R 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 X 153035648 153035648 C T PLXNB3 Silent p.H600H 0.26 TCGA-CK-4951-01 X 153035854 153035856 CTC - PLXNB3 In_Frame_Del p.S640del 0.45 TCGA-CK-4951-01 X 153040162 153040162 C A PLXNB3 Missense_Mutation p.H1301N 0.45 deleterious(0) possibly_damaging(0.535) TCGA-CK-4951-01 X 153040736 153040736 G A PLXNB3 Silent p.V1427V 0.47 TCGA-CK-4951-01 X 153040751 153040751 G A PLXNB3 Silent p.S1432S 0.44 TCGA-CK-4951-01 X 153053035 153053035 C A IDH3G Silent p.V186V 0.37 TCGA-CK-4951-01 X 153069188 153069188 G T PDZD4 Silent p.R644R 0.47 TCGA-CK-4951-01 X 153178488 153178488 C T ARHGAP4 Missense_Mutation p.E517K 0.25 tolerated(0.38) benign(0.005) TCGA-CK-4951-01 X 153220155 153220155 C T HCFC1 Missense_Mutation p.R1232H 0.57 tolerated_low_confidence(0.61) benign(0) TCGA-CK-4951-01 X 153220469 153220469 G A HCFC1 Silent p.V1127V 0.43 TCGA-CK-4951-01 X 153230136 153230136 G A HCFC1 Missense_Mutation p.P79S 0.29 deleterious(0) probably_damaging(0.986) TCGA-CK-4951-01 X 153276320 153276320 C T IRAK1 3'UTR 0.58 TCGA-CK-4951-01 X 153295794 153295794 C T MECP2 3'UTR 0.28 TCGA-CK-4951-01 X 153296346 153296346 C T MECP2 Silent p.T323T 0.27 TCGA-CK-4951-01 X 153296453 153296453 C T MECP2 Missense_Mutation p.V288M 0.16 tolerated(0.05) possibly_damaging(0.864) TCGA-CK-4951-01 X 153296458 153296458 C T MECP2 Missense_Mutation p.S286N 0.17 tolerated(0.06) benign(0.034) TCGA-CK-4951-01 X 153296463 153296463 C T MECP2 Silent p.P284P 0.15 TCGA-CK-4951-01 X 15339534 15339534 T C PIGA 3'UTR 0.32 TCGA-CK-4951-01 X 153539578 153539578 G A TKTL1 Missense_Mutation p.R220Q 0.23 tolerated(0.07) benign(0.284) TCGA-CK-4951-01 X 153577362 153577362 G A FLNA Missense_Mutation p.P2600L 0.19 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 X 153579345 153579345 G A FLNA Missense_Mutation p.A2363V 0.23 tolerated(0.36) benign(0.001) TCGA-CK-4951-01 X 153592985 153592985 G A FLNA Missense_Mutation p.A644V 0.23 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 X 153667174 153667174 A G GDI1 Missense_Mutation p.N73D 0.46 deleterious(0) probably_damaging(0.965) TCGA-CK-4951-01 X 153689927 153689927 C T PLXNA3 Silent p.G361G 0.17 TCGA-CK-4951-01 X 153760889 153760889 C T G6PD Missense_Mutation p.V424M 0.48 deleterious(0.01) possibly_damaging(0.572) TCGA-CK-4951-01 X 153880271 153880271 C T CTAG2 3'UTR 0.47 TCGA-CK-4951-01 X 153880815 153880815 C A CTAG2 Silent p.G120G 0.20 TCGA-CK-4951-01 X 153881592 153881592 G A CTAG2 Silent p.G66G 0.27 TCGA-CK-4951-01 X 153881691 153881691 G A CTAG2 Silent p.G33G 0.17 TCGA-CK-4951-01 X 154185387 154185387 T A F8 Missense_Mutation p.T533S 0.40 tolerated(0.21) benign(0.158) TCGA-CK-4951-01 X 154448486 154448486 G T VBP1 Missense_Mutation p.Q40H 0.20 deleterious(0.02) possibly_damaging(0.717) TCGA-CK-4951-01 X 154490148 154490148 T A RAB39B Silent p.V194V 0.17 TCGA-CK-4951-01 X 15863592 15863592 A T AP1S2 Silent p.I112I 0.07 TCGA-CK-4951-01 X 17086552 17086552 C A REPS2 Missense_Mutation p.L413I 0.22 tolerated(0.28) benign(0.028) TCGA-CK-4951-01 X 17653572 17653572 C - NHS Intron 0.29 TCGA-CK-4951-01 X 17710520 17710520 C A NHS Missense_Mutation p.P262T 0.22 tolerated(0.23) benign(0.025) TCGA-CK-4951-01 X 17710526 17710526 C T NHS Missense_Mutation p.P264S 0.23 tolerated(0.1) probably_damaging(0.928) TCGA-CK-4951-01 X 17744687 17744687 C T NHS Missense_Mutation p.L800F 0.28 tolerated(0.38) benign(0.024) TCGA-CK-4951-01 X 17819910 17819910 G A RAI2 Missense_Mutation p.A74V 0.52 deleterious(0) possibly_damaging(0.695) TCGA-CK-4951-01 X 18912538 18912538 G A PHKA2 Intron 0.46 TCGA-CK-4951-01 X 19369476 19369476 T C PDHA1 Silent p.F161F 0.46 TCGA-CK-4951-01 X 21508662 21508662 T A CNKSR2 Missense_Mutation p.I216N 0.21 deleterious(0) possibly_damaging(0.699) TCGA-CK-4951-01 X 228248 228248 C T GTPBP6 Silent p.Q92Q 0.27 TCGA-CK-4951-01 X 23397859 23397859 G T PTCHD1 Missense_Mutation p.R168L 0.43 tolerated(0.78) benign(0.107) TCGA-CK-4951-01 X 23398271 23398271 G C PTCHD1 Silent p.V305V 0.52 TCGA-CK-4951-01 X 23925829 23925829 A T APOO 5'UTR 0.21 TCGA-CK-4951-01 X 24075809 24075809 C T EIF2S3 Silent p.S107S 0.23 TCGA-CK-4951-01 X 2408484 2408484 C T ZBED1 Missense_Mutation p.A93T 0.26 deleterious(0.01) probably_damaging(0.974) TCGA-CK-4951-01 X 24229152 24229152 A T ZFX Nonsense_Mutation p.R693* 0.24 TCGA-CK-4951-01 X 24767020 24767020 G T POLA1 Missense_Mutation p.A953S 0.22 deleterious(0.01) probably_damaging(1) TCGA-CK-4951-01 X 2772098 2772098 T A GYG2 Missense_Mutation p.F107Y 0.31 tolerated(0.05) benign(0.162) TCGA-CK-4951-01 X 27765345 27765345 A C DCAF8L2 Silent p.T111T 0.47 TCGA-CK-4951-01 X 27765444 27765444 G A DCAF8L2 Silent p.E144E 0.23 TCGA-CK-4951-01 X 27766133 27766133 T A DCAF8L2 Missense_Mutation p.V374E 0.21 deleterious(0.01) possibly_damaging(0.84) TCGA-CK-4951-01 X 27766146 27766146 T A DCAF8L2 Missense_Mutation p.N378K 0.21 tolerated(0.1) possibly_damaging(0.596) TCGA-CK-4951-01 X 27766455 27766455 G T DCAF8L2 Missense_Mutation p.R481S 0.54 deleterious(0.03) benign(0.287) TCGA-CK-4951-01 X 2871283 2871283 G A ARSE Missense_Mutation p.R111C 0.18 deleterious(0) probably_damaging(0.99) TCGA-CK-4951-01 X 299365 299365 C T PPP2R3B Silent p.E517E 0.29 TCGA-CK-4951-01 X 30260296 30260296 G A MAGEB4 Missense_Mutation p.R15H 0.17 deleterious(0.04) possibly_damaging(0.868) TCGA-CK-4951-01 X 30260766 30260766 A G MAGEB4 Missense_Mutation p.T172A 0.21 tolerated(0.43) benign(0.166) TCGA-CK-4951-01 X 306309 306309 C T PPP2R3B Silent p.L326L 0.18 TCGA-CK-4951-01 X 306312 306312 C G PPP2R3B Missense_Mutation p.E325D 0.19 deleterious(0) probably_damaging(0.95) TCGA-CK-4951-01 X 30877651 30877651 G A TAB3 Missense_Mutation p.R19C 0.20 deleterious(0) possibly_damaging(0.896) TCGA-CK-4951-01 X 31090027 31090027 G A FTHL17 Missense_Mutation p.T15I 0.25 tolerated(0.07) benign(0.04) TCGA-CK-4951-01 X 3235356 3235356 G A MXRA5 Silent p.C2122C 0.08 TCGA-CK-4951-01 X 3235920 3235920 G A MXRA5 Silent p.H1934H 0.24 TCGA-CK-4951-01 X 34149560 34149560 G T FAM47A Missense_Mutation p.P279H 0.17 tolerated(0.18) benign(0.104) TCGA-CK-4951-01 X 347109 347109 C T PPP2R3B Silent p.T106T 0.42 TCGA-CK-4951-01 X 36329050 36329050 A G CXorf30 Missense_Mutation p.I210V 0.08 tolerated(0.14) possibly_damaging(0.745) TCGA-CK-4951-01 X 36379558 36379558 A T CXorf30 Missense_Mutation p.M435L 0.18 tolerated(0.05) benign(0.009) TCGA-CK-4951-01 X 37026845 37026845 T A FAM47C Missense_Mutation p.V121E 0.31 deleterious(0) probably_damaging(0.936) TCGA-CK-4951-01 X 37312768 37312768 G A PRRG1 Missense_Mutation p.S184N 0.20 tolerated(0.45) benign(0.002) TCGA-CK-4951-01 X 37705588 37705588 G T DYNLT3 Silent p.A18A 0.24 TCGA-CK-4951-01 X 38033565 38033565 T A SRPX Missense_Mutation p.D66V 0.15 tolerated(0.17) benign(0.388) TCGA-CK-4951-01 X 38145922 38145922 T - RPGR Frame_Shift_Del p.K777Rfs*38 0.20 TCGA-CK-4951-01 X 38176692 38176692 C T RPGR Missense_Mutation p.D166N 0.44 possibly_damaging(0.823) TCGA-CK-4951-01 X 38420807 38420807 C G TSPAN7 Missense_Mutation p.S3W 0.41 deleterious(0.01) probably_damaging(0.959) TCGA-CK-4951-01 X 39913166 39913166 T A BCOR Missense_Mutation p.Y1650F 0.25 deleterious(0.03) probably_damaging(0.989) TCGA-CK-4951-01 X 39932750 39932750 C T BCOR Missense_Mutation p.A617T 0.20 tolerated(0.56) benign(0.001) TCGA-CK-4951-01 X 41334126 41334126 G A NYX Missense_Mutation p.V474M 0.10 tolerated_low_confidence(0.28) benign(0.001) TCGA-CK-4951-01 X 43702949 43702949 C T MAOB Silent p.R36R 0.42 TCGA-CK-4951-01 X 43703009 43703009 A G MAOB Silent p.G16G 0.25 TCGA-CK-4951-01 X 44120529 44120529 C T EFHC2 Missense_Mutation p.R133H 0.49 deleterious(0) probably_damaging(0.952) TCGA-CK-4951-01 X 44919358 44919358 C T KDM6A Missense_Mutation p.A429V 0.50 deleterious(0.02) benign(0.42) TCGA-CK-4951-01 X 46433794 46433794 C T CHST7 Missense_Mutation p.P143L 0.30 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 X 46433904 46433904 C T CHST7 Missense_Mutation p.R180C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.828) TCGA-CK-4951-01 X 46618347 46618347 A C SLC9A7 Missense_Mutation p.S40A 0.20 tolerated(1) benign(0) TCGA-CK-4951-01 X 47044988 47044988 G A RBM10 Missense_Mutation p.E772K 0.19 deleterious(0) probably_damaging(0.932) TCGA-CK-4951-01 X 47058310 47058310 C T UBA1 Missense_Mutation p.P37S 0.26 tolerated(0.29) benign(0.003) TCGA-CK-4951-01 X 47070573 47070573 G A UBA1 Missense_Mutation p.V805I 0.24 tolerated(0.1) benign(0.025) TCGA-CK-4951-01 X 47101020 47101020 C T USP11 Silent p.D410D 0.18 TCGA-CK-4951-01 X 47444866 47444866 G A TIMP1 Intron 0.19 TCGA-CK-4951-01 X 47485405 47485405 C T CFP Intron 0.53 TCGA-CK-4951-01 X 47497437 47497437 G A ELK1 Missense_Mutation p.P267S 0.23 tolerated(0.21) benign(0.002) TCGA-CK-4951-01 X 48398288 48398288 G A TBC1D25 Missense_Mutation p.V35M 0.45 deleterious(0.01) unknown(0) TCGA-CK-4951-01 X 48457103 48457103 A T WDR13 Splice_Site p.X14_splice 0.22 TCGA-CK-4951-01 X 48457292 48457292 G T WDR13 Missense_Mutation p.A77S 0.24 tolerated(1) benign(0.014) TCGA-CK-4951-01 X 48458104 48458104 A T WDR13 Silent p.A174A 0.20 TCGA-CK-4951-01 X 48558688 48558688 G A SUV39H1 Silent p.Q124Q 0.55 TCGA-CK-4951-01 X 48559135 48559135 C T SUV39H1 Silent p.Y273Y 0.46 TCGA-CK-4951-01 X 48673294 48673294 C T HDAC6 Silent p.D351D 0.49 TCGA-CK-4951-01 X 48674571 48674571 G A HDAC6 Missense_Mutation p.R506H 0.60 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 X 48678558 48678558 C T HDAC6 Missense_Mutation p.R745W 0.48 deleterious(0.04) benign(0.159) TCGA-CK-4951-01 X 48755701 48755701 G A PQBP1 5'UTR 0.24 TCGA-CK-4951-01 X 48767201 48767201 C T SLC35A2 Missense_Mutation p.R55H 0.16 deleterious(0) possibly_damaging(0.459) TCGA-CK-4951-01 X 48780945 48780945 C T OTUD5 Missense_Mutation p.R520Q 0.23 tolerated(0.11) benign(0.005) TCGA-CK-4951-01 X 48837829 48837829 G A GRIPAP1 Missense_Mutation p.A610V 0.25 benign(0.009) TCGA-CK-4951-01 X 48895829 48895829 C T TFE3 Missense_Mutation p.A225T 0.20 tolerated(0.37) possibly_damaging(0.483) TCGA-CK-4951-01 X 48921940 48921940 C T CCDC120 Nonsense_Mutation p.Q122* 0.31 TCGA-CK-4951-01 X 48921988 48921988 C T CCDC120 Silent p.L138L 0.16 TCGA-CK-4951-01 X 48922017 48922017 C T CCDC120 Silent p.R147R 0.26 TCGA-CK-4951-01 X 48931589 48931589 C T PRAF2 Missense_Mutation p.A20T 0.27 tolerated(0.33) benign(0.373) TCGA-CK-4951-01 X 49021225 49021225 G A MAGIX Missense_Mutation p.A102T 0.22 tolerated(0.6) benign(0.004) TCGA-CK-4951-01 X 49029486 49029486 T C PLP2 Missense_Mutation p.L36P 0.47 deleterious(0) probably_damaging(0.999) TCGA-CK-4951-01 X 49084876 49084876 G A CACNA1F Missense_Mutation p.A284V 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-CK-4951-01 X 49142744 49142744 A T PPP1R3F Missense_Mutation p.D531V 0.20 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-CK-4951-01 X 49646271 49646271 T C USP27X 3'UTR 0.22 TCGA-CK-4951-01 X 51075786 51075786 G A NUDT10 5'UTR 0.08 TCGA-CK-4951-01 X 51239342 51239342 C T NUDT11 5'UTR 0.55 TCGA-CK-4951-01 X 51640086 51640086 G A MAGED1 Silent p.S501S 0.22 TCGA-CK-4951-01 X 53106324 53106324 G A GPR173 Missense_Mutation p.C174Y 0.48 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 X 53263747 53263747 G C IQSEC2 Missense_Mutation p.A1374G 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.567) TCGA-CK-4951-01 X 53283881 53283881 G A IQSEC2 Missense_Mutation p.A411V 0.23 tolerated_low_confidence(0.75) benign(0.016) TCGA-CK-4951-01 X 53284001 53284001 C T IQSEC2 Missense_Mutation p.R371H 0.21 deleterious(0) probably_damaging(0.979) TCGA-CK-4951-01 X 53350198 53350198 G A IQSEC2 Missense_Mutation p.R42W 0.14 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-CK-4951-01 X 53440211 53440211 G A SMC1A Missense_Mutation p.R196C 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 X 53458372 53458372 C - HSD17B10 Frame_Shift_Del p.A256Pfs*? 0.20 TCGA-CK-4951-01 X 54259284 54259284 G A WNK3 Missense_Mutation p.P1600S 0.15 deleterious(0) benign(0.13) TCGA-CK-4951-01 X 54776442 54776442 C A ITIH6 Missense_Mutation p.K1276N 0.27 tolerated(0.1) probably_damaging(0.996) TCGA-CK-4951-01 X 55289777 55289777 T C PAGE3 Missense_Mutation p.S34G 0.53 tolerated(0.13) possibly_damaging(0.787) TCGA-CK-4951-01 X 55651403 55651403 G A FOXR2 3'UTR 0.39 TCGA-CK-4951-01 X 57162287 57162287 A G SPIN2A Silent p.H248H 0.18 TCGA-CK-4951-01 X 57162298 57162298 C T SPIN2A Missense_Mutation p.D245N 0.19 tolerated(0.14) benign(0.42) TCGA-CK-4951-01 X 57936523 57936523 G A ZXDA Missense_Mutation p.P111L 0.25 tolerated_low_confidence(0.11) benign(0.01) TCGA-CK-4951-01 X 5827170 5827170 T G NLGN4X Missense_Mutation p.K246Q 0.16 tolerated(0.59) benign(0.046) TCGA-CK-4951-01 X 62857997 62857997 G A ARHGEF9 Nonsense_Mutation p.Q488* 0.15 TCGA-CK-4951-01 X 62858003 62858003 T A ARHGEF9 Missense_Mutation p.I486F 0.15 tolerated(0.06) benign(0.081) TCGA-CK-4951-01 X 65392369 65392369 C T HEPH Missense_Mutation p.H168Y 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4951-01 X 65486331 65486331 G A HEPH Missense_Mutation p.M1152I 0.25 tolerated(0.42) benign(0.001) TCGA-CK-4951-01 X 67937239 67937239 C T STARD8 Silent p.I161I 0.16 TCGA-CK-4951-01 X 67941397 67941397 G A STARD8 Nonsense_Mutation p.W756* 0.24 TCGA-CK-4951-01 X 67941431 67941431 C T STARD8 Missense_Mutation p.P768S 0.34 tolerated(0.15) probably_damaging(0.909) TCGA-CK-4951-01 X 69283051 69283051 C T OTUD6A Missense_Mutation p.S226L 0.28 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 X 69283190 69283190 G A OTUD6A Silent p.V272V 0.47 TCGA-CK-4951-01 X 69521759 69521759 C T KIF4A Missense_Mutation p.L176F 0.16 deleterious(0) probably_damaging(0.961) TCGA-CK-4951-01 X 69649433 69649433 G A GDPD2 Missense_Mutation p.E343K 0.17 tolerated(1) benign(0.004) TCGA-CK-4951-01 X 69669681 69669681 G A DLG3 Missense_Mutation p.M225I 0.31 tolerated(0.61) benign(0.045) TCGA-CK-4951-01 X 69670620 69670620 T G DLG3 Silent p.P324P 0.16 TCGA-CK-4951-01 X 70281749 70281749 G - SNX12 Frame_Shift_Del p.F111Lfs*67 0.14 TCGA-CK-4951-01 X 70349664 70349664 G A MED12 Missense_Mutation p.D1276N 0.50 benign(0.017) TCGA-CK-4951-01 X 70524072 70524072 A G ITGB1BP2 Silent p.T225T 0.25 TCGA-CK-4951-01 X 70775803 70775803 G T OGT Splice_Site p.X309_splice 0.54 TCGA-CK-4951-01 X 70824132 70824132 T A ACRC Silent p.P335P 0.23 TCGA-CK-4951-01 X 70830605 70830605 G A ACRC Missense_Mutation p.M562I 0.25 unknown(0) TCGA-CK-4951-01 X 71358862 71358862 C T NHSL2 Silent p.P488P 0.16 TCGA-CK-4951-01 X 73524038 73524038 C T ZCCHC13 5'UTR 0.18 TCGA-CK-4951-01 X 73524180 73524180 C T ZCCHC13 Nonsense_Mutation p.R27* 0.53 TCGA-CK-4951-01 X 73961894 73961894 A T KIAA2022 Missense_Mutation p.F833Y 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-CK-4951-01 X 74318854 74318854 A G ABCB7 Missense_Mutation p.S127P 0.57 tolerated(0.21) possibly_damaging(0.543) TCGA-CK-4951-01 X 74519614 74519614 C T UPRT Nonsense_Mutation p.R203* 0.23 TCGA-CK-4951-01 X 75649034 75649034 G A MAGEE1 Silent p.P237P 0.46 TCGA-CK-4951-01 X 76225839 76225839 G T MIR325 RNA 0.48 TCGA-CK-4951-01 X 77380495 77380495 C T PGK1 Missense_Mutation p.A354V 0.19 deleterious(0.03) benign(0.052) TCGA-CK-4951-01 X 7868613 7868613 T A PNPLA4 3'UTR 0.26 TCGA-CK-4951-01 X 79698897 79698897 C G FAM46D Missense_Mutation p.H287D 0.29 deleterious(0) probably_damaging(1) TCGA-CK-4951-01 X 79931885 79931885 G T BRWD3 3'UTR 0.43 TCGA-CK-4951-01 X 79973152 79973152 C T BRWD3 Silent p.R717R 0.20 TCGA-CK-4951-01 X 80001215 80001215 A T BRWD3 Silent p.S148S 0.24 TCGA-CK-4951-01 X 83359574 83359574 G A RPS6KA6 Missense_Mutation p.S516L 0.12 deleterious(0) probably_damaging(0.994) TCGA-CK-4951-01 X 83403063 83403063 T - RPS6KA6 Frame_Shift_Del p.A110Pfs*3 0.12 TCGA-CK-4951-01 X 83442897 83442897 A G RPS6KA6 Missense_Mutation p.F4S 0.38 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-CK-4951-01 X 86872972 86872972 G A KLHL4 Silent p.L255L 0.27 TCGA-CK-4951-01 X 86921476 86921476 A G KLHL4 Intron 0.19 TCGA-CK-4951-01 X 88009119 88009119 C A CPXCR1 Missense_Mutation p.S235Y 0.48 deleterious(0) benign(0.144) TCGA-CK-4951-01 X 88009154 88009155 - T CPXCR1 Frame_Shift_Ins p.N249* 0.33 TCGA-CK-4951-01 X 9863528 9863528 C T SHROOM2 Missense_Mutation p.P527L 0.26 tolerated(0.68) benign(0.001) TCGA-CK-4951-01 X 9863691 9863691 G A SHROOM2 Silent p.P581P 0.29 TCGA-CK-4951-01 X 9864417 9864417 A G SHROOM2 Silent p.R823R 0.17 TCGA-CK-4951-01 X 99956472 99956472 T A SYTL4 Missense_Mutation p.K103M 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CK-4952-01 10 101935817 101935817 G A ERLIN1 Silent p.I105I 0.41 TCGA-CK-4952-01 10 123600635 123600635 A G ATE1 Silent p.D373D 0.11 TCGA-CK-4952-01 10 3822362 3822362 C T KLF6 Missense_Mutation p.E246K 0.49 deleterious(0) benign(0.252) TCGA-CK-4952-01 10 99133421 99133421 G A RRP12 Missense_Mutation p.T646M 0.42 deleterious(0.03) possibly_damaging(0.627) TCGA-CK-4952-01 11 103093773 103093773 A G DYNC2H1 Missense_Mutation p.E3104G 0.08 probably_damaging(0.984) TCGA-CK-4952-01 11 129793296 129793296 C T PRDM10 Silent p.V631V 0.39 TCGA-CK-4952-01 11 22848856 22848856 C T SVIP Missense_Mutation p.R39Q 0.35 deleterious(0) probably_damaging(0.986) TCGA-CK-4952-01 11 43284510 43284510 G A HNRNPKP3 RNA 0.41 TCGA-CK-4952-01 11 55340537 55340537 A T OR4C16 3'Flank 0.47 TCGA-CK-4952-01 11 57147010 57147010 C T PRG3 Missense_Mutation p.R111H 0.48 tolerated(0.54) benign(0.001) TCGA-CK-4952-01 11 64764467 64764467 C T BATF2 5'UTR 0.35 TCGA-CK-4952-01 11 65043448 65043448 C T POLA2 Missense_Mutation p.S147L 0.41 deleterious(0.02) possibly_damaging(0.817) TCGA-CK-4952-01 11 65347724 65347724 G A EHBP1L1 Missense_Mutation p.R162H 0.47 deleterious(0) probably_damaging(0.998) TCGA-CK-4952-01 11 65623714 65623714 C A CFL1 Splice_Site p.X2_splice 0.40 TCGA-CK-4952-01 11 65746553 65746553 C T SART1 3'UTR 0.39 TCGA-CK-4952-01 11 71946900 71946900 C T INPPL1 Missense_Mutation p.R917C 0.43 tolerated(0.1) benign(0.366) TCGA-CK-4952-01 11 99932087 99932087 G A CNTN5 Missense_Mutation p.R375H 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-CK-4952-01 12 108642021 108642021 G A WSCD2 Silent p.A533A 0.28 TCGA-CK-4952-01 12 110924158 110924158 G A FAM216A Missense_Mutation p.R112H 0.27 tolerated_low_confidence(0.1) benign(0.036) TCGA-CK-4952-01 12 117604704 117604704 G A FBXO21 Missense_Mutation p.R398W 0.59 deleterious(0) possibly_damaging(0.724) TCGA-CK-4952-01 12 122208871 122208871 C T TMEM120B Silent p.L204L 0.66 TCGA-CK-4952-01 12 12870985 12870986 - G CDKN1B Frame_Shift_Ins p.K73Qfs*52 0.38 TCGA-CK-4952-01 12 40714838 40714841 TGTC - LRRK2 Frame_Shift_Del p.S1674Tfs*5 0.48 TCGA-CK-4952-01 12 50236841 50236841 C T BCDIN3D Silent p.G10G 0.25 TCGA-CK-4952-01 12 85255730 85255730 A G SLC6A15 Missense_Mutation p.L625P 0.23 deleterious(0) probably_damaging(0.977) TCGA-CK-4952-01 12 99059362 99059362 A G APAF1 Silent p.A329A 0.74 TCGA-CK-4952-01 13 27333014 27333014 G A GPR12 Silent p.C317C 0.38 TCGA-CK-4952-01 13 41766778 41766778 G C KBTBD7 Missense_Mutation p.P539R 0.40 deleterious(0.03) probably_damaging(1) TCGA-CK-4952-01 13 51819487 51819487 T C FAM124A Missense_Mutation p.L47P 0.09 tolerated_low_confidence(0.09) benign(0.003) TCGA-CK-4952-01 13 58299057 58299057 A T PCDH17 Missense_Mutation p.S1037C 0.40 tolerated_low_confidence(0.11) benign(0.004) TCGA-CK-4952-01 14 106090969 106090969 G A IGHG4 Silent p.P276P 0.28 TCGA-CK-4952-01 14 21827660 21827660 C A SUPT16H Missense_Mutation p.D762Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-CK-4952-01 14 24584836 24584836 C T DCAF11 Silent p.S11S 0.13 TCGA-CK-4952-01 14 24777162 24777162 C T NOP9 3'UTR 0.48 TCGA-CK-4952-01 14 35560340 35560340 A G PPP2R3C Missense_Mutation p.F350S 0.10 deleterious(0) probably_damaging(0.971) TCGA-CK-4952-01 14 63174267 63174267 G A KCNH5 Missense_Mutation p.P976S 0.04 deleterious_low_confidence(0) benign(0.261) TCGA-CK-4952-01 14 74427987 74427987 G A COQ6 Missense_Mutation p.V335I 0.04 tolerated(0.25) benign(0.104) TCGA-CK-4952-01 14 86090422 86090422 G A FLRT2 3'UTR 0.41 TCGA-CK-4952-01 15 33893731 33893731 C T RYR3 Nonsense_Mutation p.R634* 0.41 TCGA-CK-4952-01 15 43577101 43577101 G A TGM7 Silent p.S305S 0.39 TCGA-CK-4952-01 15 54305111 54305111 A C UNC13C Missense_Mutation p.N4T 0.40 tolerated_low_confidence(0.78) benign(0.001) TCGA-CK-4952-01 15 66599165 66599165 G C DIS3L Missense_Mutation p.Q99H 0.41 tolerated(0.59) benign(0.002) TCGA-CK-4952-01 15 67358517 67358517 C T SMAD3 Missense_Mutation p.P9S 0.52 tolerated(1) benign(0.052) TCGA-CK-4952-01 16 14702917 14702917 G A PARN Silent p.T206T 0.45 TCGA-CK-4952-01 16 15788019 15788019 C G NDE1 Intron 0.37 TCGA-CK-4952-01 16 1827785 1827785 G A SPSB3 Silent p.H228H 0.31 TCGA-CK-4952-01 16 24834213 24834213 C T TNRC6A Missense_Mutation p.R1798C 0.06 deleterious(0) probably_damaging(0.998) TCGA-CK-4952-01 16 30620850 30620850 C T ZNF689 Silent p.Q105Q 0.40 TCGA-CK-4952-01 16 4033428 4033428 G A ADCY9 Missense_Mutation p.S775F 0.42 deleterious(0.04) benign(0.212) TCGA-CK-4952-01 16 53534135 53534135 G A AKTIP Missense_Mutation p.R13C 0.39 tolerated_low_confidence(0.11) benign(0.004) TCGA-CK-4952-01 16 57003370 57003370 C T CETP Silent p.S102S 0.41 TCGA-CK-4952-01 16 57060652 57060654 GAA - NLRC5 In_Frame_Del p.K601del 0.40 TCGA-CK-4952-01 16 57736006 57736006 G A CCDC135 Silent p.T221T 0.43 TCGA-CK-4952-01 16 81150998 81150998 G A PKD1L2 RNA 0.46 TCGA-CK-4952-01 16 81232624 81232624 C T PKD1L2 Missense_Mutation p.E396K 0.36 deleterious(0.03) benign(0.037) TCGA-CK-4952-01 17 10428126 10428126 C T MYH2 Missense_Mutation p.R1640H 0.42 deleterious(0.04) benign(0.04) TCGA-CK-4952-01 17 38652509 38652509 C T TNS4 Missense_Mutation p.V57M 0.44 tolerated(0.31) benign(0) TCGA-CK-4952-01 17 39643859 39643859 C T KRT36 Missense_Mutation p.R277H 0.42 tolerated(0.13) benign(0.071) TCGA-CK-4952-01 17 42461276 42461276 G A ITGA2B Silent p.D328D 0.48 TCGA-CK-4952-01 17 7187680 7187680 G A SLC2A4 Missense_Mutation p.E237K 0.47 deleterious(0.01) possibly_damaging(0.527) TCGA-CK-4952-01 17 80280156 80280156 A G SECTM1 Missense_Mutation p.W210R 0.43 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-CK-4952-01 18 44036035 44036035 A C RNF165 Missense_Mutation p.E305D 0.37 tolerated(0.11) probably_damaging(0.997) TCGA-CK-4952-01 18 56246166 56246166 G A ALPK2 Silent p.T614T 0.43 TCGA-CK-4952-01 19 10943714 10943714 G A DNM2 3'Flank 0.40 TCGA-CK-4952-01 19 14574647 14574647 G A PKN1 Silent p.A507A 0.41 TCGA-CK-4952-01 19 15121701 15121701 C T CCDC105 Missense_Mutation p.R22C 0.51 deleterious(0.02) benign(0.091) TCGA-CK-4952-01 19 36228816 36228816 C T KMT2B Missense_Mutation p.T2572M 0.45 possibly_damaging(0.749) TCGA-CK-4952-01 19 374004 374004 G A THEG Missense_Mutation p.R147C 0.39 tolerated_low_confidence(0.54) benign(0) TCGA-CK-4952-01 19 4714184 4714184 C T DPP9 Silent p.S74S 0.42 TCGA-CK-4952-01 19 50360963 50360963 G A PTOV1 Missense_Mutation p.G243D 0.41 deleterious(0.01) benign(0.081) TCGA-CK-4952-01 19 50954152 50954152 C T MYBPC2 Silent p.D513D 0.44 TCGA-CK-4952-01 19 54778622 54778622 C T LILRB2 Missense_Mutation p.R571K 0.48 tolerated(0.08) benign(0.009) TCGA-CK-4952-01 19 57037108 57037108 C A ZNF471 Missense_Mutation p.L558I 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-CK-4952-01 19 989857 989857 G A WDR18 Silent p.G139G 0.30 TCGA-CK-4952-01 1 110282101 110282101 G A GSTM3 Nonsense_Mutation p.R47* 0.39 TCGA-CK-4952-01 1 153005199 153005199 C A SPRR1B 3'UTR 0.44 TCGA-CK-4952-01 1 153270387 153270387 C G PGLYRP3 3'UTR 0.40 TCGA-CK-4952-01 1 158449681 158449681 T G OR10R2 Missense_Mutation p.L5R 0.50 deleterious_low_confidence(0.01) benign(0.001) TCGA-CK-4952-01 1 158946604 158946604 A G PYHIN1 3'UTR 0.09 TCGA-CK-4952-01 1 16578237 16578237 C T FBXO42 Missense_Mutation p.R361K 0.36 tolerated(0.12) probably_damaging(0.97) TCGA-CK-4952-01 1 181057934 181057934 G A IER5 5'UTR 0.47 TCGA-CK-4952-01 1 203098125 203098125 G A ADORA1 Silent p.A52A 0.45 TCGA-CK-4952-01 1 20680381 20680381 G A VWA5B1 Silent p.P1096P 0.41 TCGA-CK-4952-01 1 214817934 214817934 C T CENPF Missense_Mutation p.S1674L 0.38 benign(0.23) TCGA-CK-4952-01 1 223465962 223465962 G A SUSD4 Silent p.P60P 0.39 TCGA-CK-4952-01 1 32196483 32196483 C T BAI2 Missense_Mutation p.R1433H 0.08 tolerated(0.05) possibly_damaging(0.655) TCGA-CK-4952-01 1 3342788 3342788 C T PRDM16 Missense_Mutation p.R1095W 0.42 deleterious(0) probably_damaging(0.998) TCGA-CK-4952-01 1 40236246 40236246 G A OXCT2 Missense_Mutation p.R228C 0.38 deleterious(0) probably_damaging(0.936) TCGA-CK-4952-01 1 52912107 52912107 C T ZCCHC11 Missense_Mutation p.R1174H 0.30 tolerated(0.46) benign(0.101) TCGA-CK-4952-01 1 62253579 62253580 - C INADL Frame_Shift_Ins p.A338Cfs*20 0.38 TCGA-CK-4952-01 20 51870983 51870983 G A TSHZ2 Missense_Mutation p.R329Q 0.37 tolerated(0.45) probably_damaging(0.996) TCGA-CK-4952-01 20 53092415 53092415 G T DOK5 5'UTR 0.49 TCGA-CK-4952-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.47 deleterious(0.01) probably_damaging(1) TCGA-CK-4952-01 20 61869320 61869320 G A BIRC7 Missense_Mutation p.D139N 0.44 deleterious(0) probably_damaging(0.954) TCGA-CK-4952-01 21 11047521 11047521 C T BAGE2 RNA 0.08 TCGA-CK-4952-01 21 28302336 28302336 G A ADAMTS5 Silent p.C698C 0.38 TCGA-CK-4952-01 21 28337609 28337609 C A ADAMTS5 Nonsense_Mutation p.E368* 0.35 TCGA-CK-4952-01 21 46642128 46642129 - G ADARB1 3'UTR 0.26 TCGA-CK-4952-01 22 20307438 20307438 A G DGCR6L Missense_Mutation p.L25P 0.46 tolerated(0.05) possibly_damaging(0.876) TCGA-CK-4952-01 22 38161708 38161708 A GT TRIOBP Frame_Shift_Ins p.E2119Gfs*32 0.29 TCGA-CK-4952-01 22 42609115 42609115 T C TCF20 Missense_Mutation p.K733E 0.40 possibly_damaging(0.867) TCGA-CK-4952-01 22 45283860 45283860 G A PHF21B Missense_Mutation p.P394S 0.37 deleterious(0.03) probably_damaging(0.977) TCGA-CK-4952-01 22 50750687 50750687 G A DENND6B Missense_Mutation p.R547W 0.48 tolerated(0.06) benign(0.006) TCGA-CK-4952-01 2 11718486 11718486 G A GREB1 Missense_Mutation p.S234N 0.42 tolerated(0.19) benign(0.005) TCGA-CK-4952-01 2 119915675 119915675 G A C1QL2 Silent p.A57A 0.55 TCGA-CK-4952-01 2 152301870 152301870 G T RIF1 Missense_Mutation p.G669C 0.41 deleterious(0) probably_damaging(0.997) TCGA-CK-4952-01 2 166605362 166605362 C G GALNT3 Missense_Mutation p.E611Q 0.26 tolerated(0.43) benign(0.267) TCGA-CK-4952-01 2 179505980 179505980 T A TTN Nonsense_Mutation p.K13541* 0.32 TCGA-CK-4952-01 2 185803616 185803616 G T ZNF804A Missense_Mutation p.A1165S 0.45 deleterious(0.04) benign(0.013) TCGA-CK-4952-01 2 216289966 216289966 G A FN1 Missense_Mutation p.P296L 0.38 deleterious(0) benign(0.135) TCGA-CK-4952-01 2 219028937 219028937 C T CXCR1 Missense_Mutation p.R333H 0.47 tolerated(0.27) benign(0.02) TCGA-CK-4952-01 2 240969351 240969351 C T OR6B2 Missense_Mutation p.V166I 0.33 deleterious(0.01) benign(0.013) TCGA-CK-4952-01 2 26534522 26534522 C T GPR113 Missense_Mutation p.A692T 0.35 tolerated(0.16) benign(0.141) TCGA-CK-4952-01 2 71170816 71170816 G T ATP6V1B1 Silent p.G49G 0.09 TCGA-CK-4952-01 2 71825736 71825736 C T DYSF Missense_Mutation p.T1206M 0.34 deleterious(0) probably_damaging(1) TCGA-CK-4952-01 2 98412852 98412852 T C TMEM131 Missense_Mutation p.E1010G 0.25 deleterious(0.05) possibly_damaging(0.784) TCGA-CK-4952-01 2 98412853 98412853 C T TMEM131 Missense_Mutation p.E1010K 0.30 tolerated(0.14) possibly_damaging(0.784) TCGA-CK-4952-01 3 100364888 100364888 C T GPR128 Missense_Mutation p.S349L 0.43 deleterious(0.01) probably_damaging(0.985) TCGA-CK-4952-01 3 101572083 101572083 G T NFKBIZ Missense_Mutation p.S238I 0.40 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-CK-4952-01 3 121712209 121712209 G A ILDR1 Missense_Mutation p.R463C 0.44 deleterious(0) benign(0) TCGA-CK-4952-01 3 134264528 134264528 C A CEP63 Missense_Mutation p.T219N 0.41 deleterious(0) probably_damaging(0.986) TCGA-CK-4952-01 3 140140051 140140051 A G CLSTN2 Missense_Mutation p.K241R 0.43 tolerated(0.1) benign(0.066) TCGA-CK-4952-01 3 154138889 154138889 T C GPR149 Missense_Mutation p.Q521R 0.48 tolerated(1) benign(0.012) TCGA-CK-4952-01 3 154146547 154146547 T G GPR149 Missense_Mutation p.E286D 0.31 tolerated(0.52) benign(0) TCGA-CK-4952-01 3 186512552 186512552 C T RFC4 Missense_Mutation p.R102Q 0.30 deleterious(0) possibly_damaging(0.888) TCGA-CK-4952-01 3 197024054 197024054 C T DLG1 Intron 0.52 TCGA-CK-4952-01 3 3887095 3887095 T C LRRN1 Missense_Mutation p.L257P 0.45 tolerated(0.27) benign(0.039) TCGA-CK-4952-01 3 49928696 49928696 G T MST1R Missense_Mutation p.A1193D 0.45 deleterious(0) probably_damaging(0.998) TCGA-CK-4952-01 3 51929108 51929108 C T IQCF1 Missense_Mutation p.R139H 0.49 tolerated(0.13) benign(0.316) TCGA-CK-4952-01 3 51970462 51970464 GGA - RRP9 In_Frame_Del p.S209del 0.40 TCGA-CK-4952-01 3 52729564 52729564 T C GLT8D1 Missense_Mutation p.I229V 0.44 tolerated(0.36) benign(0.203) TCGA-CK-4952-01 4 100738044 100738044 C T DAPP1 5'UTR 0.46 TCGA-CK-4952-01 4 100738048 100738048 C T DAPP1 5'UTR 0.44 TCGA-CK-4952-01 4 106766627 106766627 G A GSTCD Missense_Mutation p.D599N 0.37 deleterious(0) probably_damaging(0.998) TCGA-CK-4952-01 4 110972407 110972407 C A ELOVL6 3'UTR 0.41 TCGA-CK-4952-01 4 121843720 121843720 G A PRDM5 Missense_Mutation p.S15F 0.37 deleterious(0) probably_damaging(0.994) TCGA-CK-4952-01 4 134071866 134071866 C A PCDH10 Silent p.R191R 0.43 TCGA-CK-4952-01 4 138442681 138442681 G A PCDH18 Silent p.D970D 0.41 TCGA-CK-4952-01 4 155412196 155412196 C T DCHS2 Silent p.S104S 0.44 TCGA-CK-4952-01 4 2695345 2695345 C A FAM193A Missense_Mutation p.H655N 0.41 deleterious(0.01) possibly_damaging(0.725) TCGA-CK-4952-01 4 75041093 75041093 G A MTHFD2L Missense_Mutation p.G142S 0.45 deleterious(0) probably_damaging(0.966) TCGA-CK-4952-01 4 7968761 7968761 G A ABLIM2 Missense_Mutation p.L632F 0.40 deleterious(0) probably_damaging(0.956) TCGA-CK-4952-01 4 8206930 8206930 C T SH3TC1 Silent p.N3N 0.40 TCGA-CK-4952-01 4 8391426 8391426 G T ACOX3 Missense_Mutation p.P446T 0.35 deleterious(0) probably_damaging(0.955) TCGA-CK-4952-01 4 85418780 85418780 G A NKX6-1 Missense_Mutation p.T201M 0.40 deleterious(0.05) unknown(0) TCGA-CK-4952-01 4 87770090 87770090 G A SLC10A6 Missense_Mutation p.S60L 0.06 tolerated(0.27) benign(0.003) TCGA-CK-4952-01 5 112151261 112151261 C T APC Nonsense_Mutation p.R302* 0.33 TCGA-CK-4952-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.25 TCGA-CK-4952-01 5 130506687 130506687 G A LYRM7 5'UTR 0.47 TCGA-CK-4952-01 5 135567123 135567123 G A TRPC7 Silent p.Y653Y 0.47 TCGA-CK-4952-01 5 140202457 140202457 C T PCDHA5 Missense_Mutation p.T366M 0.45 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-CK-4952-01 5 140625751 140625751 G A PCDHB15 Missense_Mutation p.R202H 0.42 tolerated_low_confidence(0.07) benign(0.112) TCGA-CK-4952-01 5 150847279 150847279 G A SLC36A1 Silent p.A172A 0.43 TCGA-CK-4952-01 5 156390198 156390198 T G TIMD4 Missense_Mutation p.E4D 0.42 tolerated(0.08) benign(0.316) TCGA-CK-4952-01 5 172661999 172661999 C A NKX2-5 Missense_Mutation p.A30S 0.48 tolerated(0.64) benign(0.006) TCGA-CK-4952-01 5 176314293 176314293 C T HK3 Missense_Mutation p.R549H 0.46 deleterious(0.01) probably_damaging(1) TCGA-CK-4952-01 5 179977062 179977062 T C CNOT6 Missense_Mutation p.S82P 0.48 deleterious(0) probably_damaging(0.999) TCGA-CK-4952-01 5 5239938 5239938 G A ADAMTS16 Missense_Mutation p.R808Q 0.34 tolerated(0.11) benign(0.041) TCGA-CK-4952-01 5 63257378 63257378 C T HTR1A Missense_Mutation p.V57M 0.38 deleterious(0) probably_damaging(1) TCGA-CK-4952-01 5 79026181 79026181 C T CMYA5 Silent p.I531I 0.30 TCGA-CK-4952-01 5 850650 850650 A G ZDHHC11 Missense_Mutation p.V23A 0.41 tolerated(0.45) benign(0.009) TCGA-CK-4952-01 5 85578565 85578565 T G NBPF22P RNA 0.39 TCGA-CK-4952-01 6 107824872 107824872 A G SOBP Silent p.E36E 0.08 TCGA-CK-4952-01 6 152621829 152621829 G T SYNE1 Missense_Mutation p.P5877T 0.60 probably_damaging(0.982) TCGA-CK-4952-01 6 163987893 163987893 C A QKI Intron 0.31 TCGA-CK-4952-01 6 24533775 24533775 G A ALDH5A1 Silent p.V494V 0.90 TCGA-CK-4952-01 6 30309849 30309849 G A TRIM39 Missense_Mutation p.R457Q 0.27 tolerated(0.14) benign(0.362) TCGA-CK-4952-01 6 3723931 3723931 G A PXDC1 Silent p.D206D 0.89 TCGA-CK-4952-01 6 69785915 69785915 G A BAI3 Nonsense_Mutation p.W822* 0.54 TCGA-CK-4952-01 6 88074686 88074686 G A C6orf163 Missense_Mutation p.V188M 0.65 tolerated(0.69) benign(0.003) TCGA-CK-4952-01 7 1015156 1015156 C T COX19 5'UTR 0.45 TCGA-CK-4952-01 7 120609109 120609109 A G ING3 Silent p.E253E 0.11 TCGA-CK-4952-01 7 135612357 135612357 T C AC015987.2 Missense_Mutation p.F17S 0.12 possibly_damaging(0.514) TCGA-CK-4952-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-CK-4952-01 7 142658514 142658514 G A KEL Silent p.I52I 0.33 TCGA-CK-4952-01 7 149576540 149576540 C T ATP6V0E2 Missense_Mutation p.P139L 0.43 deleterious_low_confidence(0.01) benign(0.102) TCGA-CK-4952-01 7 150771302 150771302 G A SLC4A2 Silent p.S904S 0.44 TCGA-CK-4952-01 7 151093009 151093009 C T WDR86 Silent p.T193T 0.53 TCGA-CK-4952-01 7 151188085 151188085 G A RHEB Missense_Mutation p.T23M 0.34 deleterious(0) benign(0.41) TCGA-CK-4952-01 7 19015544 19015544 T C HDAC9 Silent p.D1046D 0.47 TCGA-CK-4952-01 7 37298825 37298825 C G ELMO1 Missense_Mutation p.G125A 0.39 deleterious(0) probably_damaging(0.967) TCGA-CK-4952-01 7 99569370 99569370 G A AZGP1 Silent p.N112N 0.36 TCGA-CK-4952-01 7 99800110 99800110 G A STAG3 Missense_Mutation p.R866Q 0.40 tolerated(0.65) benign(0) TCGA-CK-4952-01 8 106331179 106331179 C A ZFPM2 Silent p.R4R 0.67 TCGA-CK-4952-01 8 143570762 143570762 G A BAI1 Missense_Mutation p.R865H 0.77 tolerated(0.09) possibly_damaging(0.812) TCGA-CK-4952-01 8 145625083 145625083 G A CPSF1 Silent p.P379P 0.15 TCGA-CK-4952-01 8 20005571 20005571 G T SLC18A1 Missense_Mutation p.A386D 0.72 deleterious(0) probably_damaging(1) TCGA-CK-4952-01 8 20107374 20107374 G A LZTS1 Silent p.Y550Y 0.75 TCGA-CK-4952-01 8 26628125 26628125 G T ADRA1A Silent p.L314L 0.12 TCGA-CK-4952-01 8 30703817 30703817 G T TEX15 Missense_Mutation p.T906N 0.23 tolerated(0.06) possibly_damaging(0.885) TCGA-CK-4952-01 8 37720292 37720292 C T RAB11FIP1 3'UTR 0.68 TCGA-CK-4952-01 8 57353999 57353999 G T PENK Silent p.G212G 0.55 TCGA-CK-4952-01 8 75927130 75927130 A - CRISPLD1 Frame_Shift_Del p.N238Ifs*22 0.25 TCGA-CK-4952-01 8 75929569 75929569 T C CRISPLD1 Silent p.C337C 0.11 TCGA-CK-4952-01 9 123421682 123421682 G A MEGF9 Missense_Mutation p.P258L 0.39 tolerated(0.11) benign(0.094) TCGA-CK-4952-01 9 123769201 123769201 G A C5 Silent p.G801G 0.31 TCGA-CK-4952-01 9 131515802 131515802 G A ZER1 Silent p.H129H 0.41 TCGA-CK-4952-01 9 137677855 137677855 C - COL5A1 Frame_Shift_Del p.P870Qfs*204 0.36 TCGA-CK-4952-01 9 94172546 94172546 G A NFIL3 Silent p.S157S 0.42 TCGA-CK-4952-01 X 100912349 100912349 G A ARMCX2 Missense_Mutation p.R76C 0.43 tolerated_low_confidence(0.25) benign(0) TCGA-CK-4952-01 X 124097455 124097455 T C TENM1 Missense_Mutation p.N50D 0.41 tolerated_low_confidence(1) benign(0.002) TCGA-CK-4952-01 X 13337505 13337505 G A ATXN3L Silent p.V183V 0.42 TCGA-CK-4952-01 X 135430758 135430758 A G GPR112 Silent p.T1631T 0.30 TCGA-CK-4952-01 X 148627252 148627252 C T CXorf40A Missense_Mutation p.R26C 0.05 tolerated(0.05) probably_damaging(1) TCGA-CK-4952-01 X 148627259 148627259 G A CXorf40A Missense_Mutation p.R28H 0.42 tolerated(0.23) benign(0.057) TCGA-CK-4952-01 X 151869845 151869845 G T MAGEA6 Missense_Mutation p.A179S 0.40 deleterious(0.02) benign(0.18) TCGA-CK-4952-01 X 153042996 153042996 A C PLXNB3 Missense_Mutation p.K1728T 0.40 deleterious(0.01) probably_damaging(1) TCGA-CK-4952-01 X 153043860 153043860 G A PLXNB3 Silent p.A1851A 0.43 TCGA-CK-4952-01 X 153069637 153069637 C T PDZD4 Missense_Mutation p.R494Q 0.49 tolerated(0.06) benign(0.004) TCGA-CK-4952-01 X 19390895 19390895 G A MAP3K15 Missense_Mutation p.P995L 0.48 deleterious(0.04) benign(0.005) TCGA-CK-4952-01 X 21674283 21674283 C T KLHL34 Missense_Mutation p.E542K 0.37 deleterious(0) probably_damaging(0.989) TCGA-CK-4952-01 X 50053782 50053782 G A CCNB3 Silent p.E871E 0.19 TCGA-CK-5912-01 10 135097477 135097477 C T TUBGCP2 Missense_Mutation p.R713Q 0.48 deleterious(0) probably_damaging(0.995) TCGA-CK-5912-01 10 25887177 25887177 G A GPR158 Silent p.P874P 0.42 TCGA-CK-5912-01 10 47158773 47158773 C T ANXA8L1 3'UTR 0.53 TCGA-CK-5912-01 10 79782124 79782124 C T POLR3A Missense_Mutation p.V222I 0.34 tolerated(0.15) benign(0.003) TCGA-CK-5912-01 11 11643130 11643130 G T GALNT18 Missense_Mutation p.T4N 0.23 tolerated(0.06) probably_damaging(0.987) TCGA-CK-5912-01 11 132305990 132305990 G A OPCML Silent p.I309I 0.07 TCGA-CK-5912-01 11 134217285 134217285 C T GLB1L2 Silent p.D172D 0.40 TCGA-CK-5912-01 11 1618945 1618945 C T KRTAP5-2 3'UTR 0.06 TCGA-CK-5912-01 11 65715510 65715510 T C TSGA10IP RNA 0.10 TCGA-CK-5912-01 11 92616260 92616260 G A FAT3 Missense_Mutation p.R4213H 0.21 benign(0.007) TCGA-CK-5912-01 12 115109969 115109969 G A TBX3 Missense_Mutation p.R637W 0.20 tolerated(0.1) probably_damaging(0.912) TCGA-CK-5912-01 12 27149707 27149707 G C TM7SF3 Missense_Mutation p.I162M 0.26 deleterious(0) possibly_damaging(0.494) TCGA-CK-5912-01 12 30843438 30843438 C T IPO8 Missense_Mutation p.R53Q 0.53 deleterious(0) possibly_damaging(0.877) TCGA-CK-5912-01 12 46316742 46316742 C T SCAF11 Missense_Mutation p.A1368T 0.16 deleterious(0.01) probably_damaging(1) TCGA-CK-5912-01 12 51640306 51640306 G A DAZAP2 3'Flank 0.56 TCGA-CK-5912-01 12 58122040 58122040 G A AGAP2-AS1 3'UTR 0.32 TCGA-CK-5912-01 12 6692034 6692034 G C CHD4 Missense_Mutation p.R1406G 0.22 tolerated(0.22) probably_damaging(0.913) TCGA-CK-5912-01 12 6859053 6859053 C G MLF2 Missense_Mutation p.D174H 0.32 deleterious(0) probably_damaging(0.984) TCGA-CK-5912-01 13 67802447 67802447 G A PCDH9 Silent p.N42N 0.09 TCGA-CK-5912-01 14 60074118 60074118 C T RTN1 Missense_Mutation p.V620M 0.81 deleterious(0) probably_damaging(1) TCGA-CK-5912-01 14 62547748 62547748 G C SYT16 Missense_Mutation p.G397A 0.73 tolerated(0.14) benign(0.007) TCGA-CK-5912-01 14 88478264 88478264 A T GPR65 3'UTR 0.16 TCGA-CK-5912-01 15 54529830 54529830 G A UNC13C Missense_Mutation p.R1057Q 0.36 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-CK-5912-01 15 69747836 69747836 T - RPLP1 Frame_Shift_Del p.F113Lfs*7 0.38 TCGA-CK-5912-01 16 2030433 2030433 G C NOXO1 Missense_Mutation p.S117R 0.10 deleterious(0.02) probably_damaging(0.993) TCGA-CK-5912-01 16 21151975 21151975 G T DNAH3 Missense_Mutation p.T193K 0.57 tolerated(0.93) benign(0.013) TCGA-CK-5912-01 16 24931391 24931391 C T ARHGAP17 3'UTR 0.29 TCGA-CK-5912-01 16 29681267 29681267 C T SPN 3'UTR 0.65 TCGA-CK-5912-01 16 30370121 30370121 G A TBC1D10B Missense_Mutation p.R554W 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-5912-01 16 3613779 3613779 C T NLRC3 Missense_Mutation p.E434K 0.09 tolerated(0.06) benign(0.009) TCGA-CK-5912-01 17 15554803 15554803 C T RP11-385D13.1 Missense_Mutation p.E41K 0.83 tolerated_low_confidence(0.1) possibly_damaging(0.795) TCGA-CK-5912-01 17 21320679 21320679 T A KCNJ12 3'UTR 0.37 TCGA-CK-5912-01 17 61776412 61776412 G A LIMD2 Silent p.G20G 0.63 TCGA-CK-5912-01 17 7417275 7417275 A G POLR2A Missense_Mutation p.T1898A 0.86 possibly_damaging(0.472) TCGA-CK-5912-01 17 76548802 76548802 G A DNAH17 Missense_Mutation p.T755M 0.22 possibly_damaging(0.837) TCGA-CK-5912-01 19 31768457 31768457 T C TSHZ3 Missense_Mutation p.S748G 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-CK-5912-01 19 54466579 54466579 C T CACNG8 Silent p.G61G 0.87 TCGA-CK-5912-01 1 235973109 235973110 - T LYST Frame_Shift_Ins p.V337Sfs*4 0.09 TCGA-CK-5912-01 1 248224761 248224761 C T OR2L3 Missense_Mutation p.R260C 0.82 tolerated(0.09) benign(0.066) TCGA-CK-5912-01 1 51439982 51439982 A C CDKN2C 3'UTR 0.86 TCGA-CK-5912-01 20 49218614 49218614 G A FAM65C Silent p.L548L 0.24 TCGA-CK-5912-01 20 58457165 58457165 G T SYCP2 Missense_Mutation p.T862N 0.20 deleterious(0) possibly_damaging(0.901) TCGA-CK-5912-01 21 10863000 10863000 A T IGHV1OR21-1 Missense_Mutation p.Y99F 0.23 tolerated(0.08) benign(0.373) TCGA-CK-5912-01 21 34038796 34038796 C T SYNJ1 Silent p.L672L 0.20 TCGA-CK-5912-01 21 36164557 36164557 C T RUNX1 Missense_Mutation p.A440T 0.73 tolerated(1) benign(0.008) TCGA-CK-5912-01 22 39387529 39387529 C T APOBEC3B Missense_Mutation p.R306C 0.30 tolerated(0.15) probably_damaging(0.947) TCGA-CK-5912-01 2 170761691 170761691 G T UBR3 Missense_Mutation p.W511C 0.83 deleterious(0) probably_damaging(0.965) TCGA-CK-5912-01 2 189406157 189406157 C T GULP1 Intron 0.06 TCGA-CK-5912-01 2 200173667 200173667 T C SATB2 Missense_Mutation p.E519G 0.90 deleterious(0) probably_damaging(0.995) TCGA-CK-5912-01 2 220342683 220342683 C T SPEG Missense_Mutation p.A1628V 0.84 benign(0.441) TCGA-CK-5912-01 2 234526288 234526288 G C UGT1A8 5'Flank 0.96 TCGA-CK-5912-01 3 142261526 142261526 C T ATR Missense_Mutation p.G1144D 0.39 tolerated(0.2) probably_damaging(0.998) TCGA-CK-5912-01 3 186980366 186980366 C T MASP1 Missense_Mutation p.R127H 0.44 deleterious(0.03) benign(0.211) TCGA-CK-5912-01 3 43756457 43756457 G A ABHD5 Missense_Mutation p.R227H 0.35 deleterious(0.01) benign(0.199) TCGA-CK-5912-01 3 51697541 51697541 A T RAD54L2 3'UTR 0.25 TCGA-CK-5912-01 3 5243567 5243568 CC G EDEM1 Frame_Shift_Del p.P273Lfs*15 0.26 TCGA-CK-5912-01 4 123265558 123265558 C G KIAA1109 Missense_Mutation p.T4192S 0.55 benign(0.002) TCGA-CK-5912-01 4 54364913 54364913 C T LNX1 Silent p.V291V 0.33 TCGA-CK-5912-01 5 112173792 112173810 CCTCTTCATCAAGAGGAAG TCTCT APC Frame_Shift_Del p.S834Ffs*5 0.67 TCGA-CK-5912-01 5 126770431 126770431 C T MEGF10 Silent p.C631C 0.79 TCGA-CK-5912-01 5 140754770 140754770 C T PCDHGA6 Nonsense_Mutation p.R374* 0.81 TCGA-CK-5912-01 5 15936965 15936965 C T FBXL7 Silent p.N382N 0.10 TCGA-CK-5912-01 5 178393043 178393043 T C ZNF454 3'UTR 0.14 TCGA-CK-5912-01 5 23524617 23524617 A T PRDM9 Missense_Mutation p.K375N 0.27 tolerated(0.05) benign(0.02) TCGA-CK-5912-01 5 24537632 24537632 C T CDH10 Missense_Mutation p.R128H 0.60 tolerated(0.23) probably_damaging(0.982) TCGA-CK-5912-01 5 26881191 26881191 A T CDH9 3'UTR 0.37 TCGA-CK-5912-01 5 36680671 36680671 C T SLC1A3 Silent p.F423F 0.16 TCGA-CK-5912-01 5 9066574 9066574 C T SEMA5A Missense_Mutation p.R753Q 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-CK-5912-01 6 158487587 158487587 G A SYNJ2 Missense_Mutation p.R546Q 0.48 deleterious(0.02) possibly_damaging(0.658) TCGA-CK-5912-01 6 26157237 26157251 AAGGCAGCCAAGCCA - HIST1H1E In_Frame_Del p.A208_K212del 0.55 TCGA-CK-5912-01 6 311904 311904 G A DUSP22 Missense_Mutation p.S27N 0.41 tolerated(0.18) benign(0.082) TCGA-CK-5912-01 7 12370820 12370820 T A VWDE Nonsense_Mutation p.R1588* 0.36 TCGA-CK-5912-01 7 23313849 23313849 G A GPNMB 3'UTR 0.41 TCGA-CK-5912-01 7 48318763 48318763 G C ABCA13 Missense_Mutation p.A2658P 0.24 possibly_damaging(0.828) TCGA-CK-5912-01 7 63505856 63505856 T A ZNF727 5'UTR 0.37 TCGA-CK-5912-01 7 88963635 88963635 C G ZNF804B Missense_Mutation p.Q447E 0.23 deleterious(0.04) possibly_damaging(0.452) TCGA-CK-5912-01 8 36644905 36644906 - TGT KCNU1 In_Frame_Ins p.L95dup 0.15 TCGA-CK-5912-01 8 68112737 68112737 T C ARFGEF1 Missense_Mutation p.E1760G 0.46 deleterious(0.02) benign(0.033) TCGA-CK-5912-01 8 71553205 71553205 G A LACTB2 Missense_Mutation p.L225F 0.42 tolerated(0.08) benign(0.182) TCGA-CK-5912-01 8 92998437 92998437 G A RUNX1T1 Silent p.D409D 0.20 TCGA-CK-5912-01 9 133911597 133911597 C T LAMC3 Missense_Mutation p.A285V 0.49 tolerated(0.53) benign(0.023) TCGA-CK-5912-01 9 135526479 135526479 C T DDX31 Missense_Mutation p.V325I 0.42 tolerated(0.43) benign(0.023) TCGA-CK-5912-01 9 2081995 2081995 C T SMARCA2 Missense_Mutation p.S783L 0.20 benign(0.022) TCGA-CK-5912-01 9 27949700 27949700 G A LINGO2 Missense_Mutation p.R324C 0.46 deleterious(0) possibly_damaging(0.774) TCGA-CK-5912-01 9 37744546 37744546 G A FRMPD1 Silent p.R839R 0.50 TCGA-CK-5912-01 9 8492931 8492931 C T PTPRD Missense_Mutation p.V800I 0.45 tolerated(0.05) probably_damaging(0.972) TCGA-CK-5912-01 9 86571195 86571195 A G C9orf64 Missense_Mutation p.L74P 0.09 deleterious(0) probably_damaging(1) TCGA-CK-5912-01 X 102339359 102339359 C T NXF3 Missense_Mutation p.V88I 0.12 tolerated(1) benign(0.021) TCGA-CK-5912-01 X 138823227 138823227 C T ATP11C Silent p.T1022T 0.88 TCGA-CK-5912-01 X 148607322 148607322 G A IDS Intron 0.75 TCGA-CK-5912-01 X 30577652 30577652 C T CXorf21 Missense_Mutation p.R274H 0.87 tolerated(0.56) benign(0.002) TCGA-CK-5912-01 X 41088571 41088572 - T USP9X Frame_Shift_Ins p.K2377* 0.51 TCGA-CK-5912-01 X 70461140 70461140 C T ZMYM3 Missense_Mutation p.R1286H 0.07 tolerated(0.19) possibly_damaging(0.467) TCGA-CK-5912-01 Y 16941985 16941985 A T NLGN4Y Missense_Mutation p.D396V 0.47 deleterious(0) possibly_damaging(0.716) TCGA-CK-5913-01 10 102541041 102541041 A G PAX2 Missense_Mutation p.N179D 0.15 deleterious(0.05) benign(0.313) TCGA-CK-5913-01 10 104176203 104176203 C - PSD Frame_Shift_Del p.G198Afs*19 0.50 TCGA-CK-5913-01 10 105139519 105139519 C A TAF5 Missense_Mutation p.P423H 0.34 deleterious(0.01) possibly_damaging(0.764) TCGA-CK-5913-01 10 105152191 105152191 C T USMG5 Silent p.A8A 0.31 TCGA-CK-5913-01 10 105204376 105204376 G A PDCD11 Missense_Mutation p.R1794H 0.33 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 10 105793901 105793901 A G COL17A1 Missense_Mutation p.S1320P 0.11 unknown(0) TCGA-CK-5913-01 10 1066741 1066741 C T IDI2 Missense_Mutation p.R111H 0.35 deleterious(0.01) benign(0.089) TCGA-CK-5913-01 10 114170385 114170385 G T ACSL5 Missense_Mutation p.G319V 0.41 deleterious(0.01) probably_damaging(1) TCGA-CK-5913-01 10 118687356 118687356 A G KIAA1598 Silent p.P353P 0.36 TCGA-CK-5913-01 10 12160845 12160845 C T DHTKD1 Nonsense_Mutation p.R834* 0.29 TCGA-CK-5913-01 10 126715243 126715243 G C CTBP2 Silent p.G362G 0.30 TCGA-CK-5913-01 10 131973265 131973265 G A GLRX3 Missense_Mutation p.R290Q 0.10 deleterious(0.01) possibly_damaging(0.648) TCGA-CK-5913-01 10 16982062 16982062 G A CUBN Silent p.S1839S 0.39 TCGA-CK-5913-01 10 18940176 18940176 C T NSUN6 5'UTR 0.33 TCGA-CK-5913-01 10 22048436 22048437 - C DNAJC1 Frame_Shift_Ins p.V420Gfs*13 0.17 TCGA-CK-5913-01 10 22690126 22690126 A G SPAG6 Missense_Mutation p.T412A 0.15 tolerated(0.09) benign(0.217) TCGA-CK-5913-01 10 27024210 27024210 C T PDSS1 Silent p.I291I 0.09 TCGA-CK-5913-01 10 27459056 27459056 A - MASTL Frame_Shift_Del p.K391Nfs*12 0.24 TCGA-CK-5913-01 10 28032311 28032311 C T MKX Missense_Mutation p.A12T 0.37 tolerated_low_confidence(0.6) benign(0.29) TCGA-CK-5913-01 10 28224054 28224054 G A ARMC4 Missense_Mutation p.R794W 0.09 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 10 33143335 33143335 G A C10ORF68 Silent p.S586S 0.29 TCGA-CK-5913-01 10 38406477 38406477 T C ZNF37A Missense_Mutation p.L133P 0.09 tolerated(0.18) benign(0.221) TCGA-CK-5913-01 10 390982 390982 C T DIP2C Silent p.A1100A 0.36 TCGA-CK-5913-01 10 48413529 48413529 T C GDF2 3'UTR 0.30 TCGA-CK-5913-01 10 49654487 49654487 A - ARHGAP22 Frame_Shift_Del p.S698Rfs*3 0.31 TCGA-CK-5913-01 10 49658388 49658388 C T ARHGAP22 Missense_Mutation p.R611H 0.11 tolerated(0.14) benign(0.008) TCGA-CK-5913-01 10 50121796 50121796 G A LRRC18 Silent p.S135S 0.40 TCGA-CK-5913-01 10 5014921 5014921 C T AKR1C1 Missense_Mutation p.R276C 0.12 deleterious(0) probably_damaging(0.994) TCGA-CK-5913-01 10 50594586 50594586 G A DRGX Missense_Mutation p.P160L 0.61 tolerated(0.08) benign(0.045) TCGA-CK-5913-01 10 50820605 50820605 G A SLC18A3 3'UTR 0.32 TCGA-CK-5913-01 10 61612456 61612456 G A CCDC6 Missense_Mutation p.A103V 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-CK-5913-01 10 62631382 62631382 C T RHOBTB1 Missense_Mutation p.R650H 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-CK-5913-01 10 63212621 63212621 C T TMEM26 Intron 0.37 TCGA-CK-5913-01 10 63943957 63943957 T C RTKN2 3'UTR 0.26 TCGA-CK-5913-01 10 71007277 71007277 G A HKDC1 Missense_Mutation p.R398Q 0.18 tolerated(0.36) benign(0.018) TCGA-CK-5913-01 10 72181696 72181696 C G EIF4EBP2 3'UTR 0.35 TCGA-CK-5913-01 10 72358862 72358862 G A PRF1 Silent p.N205N 0.44 TCGA-CK-5913-01 10 72360581 72360581 G A PRF1 Silent p.A26A 0.26 TCGA-CK-5913-01 10 73437258 73437258 G A CDH23 Silent p.R112R 0.13 TCGA-CK-5913-01 10 75574891 75574891 C T CAMK2G Missense_Mutation p.G518E 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.475) TCGA-CK-5913-01 10 75676214 75676214 G T PLAU Missense_Mutation p.W396L 0.39 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 10 7777012 7777012 A G ITIH2 Missense_Mutation p.M639V 0.16 tolerated(0.12) benign(0.387) TCGA-CK-5913-01 10 79572115 79572115 C T DLG5 Missense_Mutation p.R1349H 0.14 deleterious(0) probably_damaging(0.992) TCGA-CK-5913-01 10 81145932 81145932 T C ZCCHC24 3'UTR 0.20 TCGA-CK-5913-01 10 84118577 84118577 C A NRG3 Silent p.G302G 0.34 TCGA-CK-5913-01 10 85996985 85996985 G A LRIT1 Missense_Mutation p.R194W 0.31 deleterious(0) benign(0.014) TCGA-CK-5913-01 10 89574496 89574496 A - ATAD1 Intron 0.53 TCGA-CK-5913-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.28 TCGA-CK-5913-01 10 90499788 90499788 G A LIPK Silent p.A284A 0.36 TCGA-CK-5913-01 10 90966809 90966809 C T CH25H Missense_Mutation p.A81T 0.33 tolerated(0.41) benign(0.007) TCGA-CK-5913-01 10 94834559 94834559 C T CYP26A1 Silent p.R146R 0.32 TCGA-CK-5913-01 10 96291203 96291203 A - TBC1D12 Frame_Shift_Del p.K750Nfs*9 0.27 TCGA-CK-5913-01 11 1020712 1020712 T C MUC6 Silent p.P1204P 0.24 TCGA-CK-5913-01 11 1077619 1077619 C - MUC2 Frame_Shift_Del p.L126Cfs*104 0.33 TCGA-CK-5913-01 11 1080307 1080307 A G MUC2 Missense_Mutation p.S343G 0.16 benign(0.022) TCGA-CK-5913-01 11 1084745 1084745 G A MUC2 Missense_Mutation p.G847E 0.40 probably_damaging(1) TCGA-CK-5913-01 11 10876127 10876127 G A ZBED5 Silent p.F122F 0.18 TCGA-CK-5913-01 11 114027087 114027087 G A ZBTB16 Missense_Mutation p.G433R 0.37 tolerated(0.2) possibly_damaging(0.872) TCGA-CK-5913-01 11 117096723 117096723 C T PCSK7 Missense_Mutation p.D262N 0.42 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 11 118375434 118375434 A G KMT2A Missense_Mutation p.T2943A 0.31 possibly_damaging(0.625) TCGA-CK-5913-01 11 118651863 118651863 T - DDX6 Frame_Shift_Del p.K77Nfs*7 0.31 TCGA-CK-5913-01 11 118766809 118766809 G T BCL9L 3'UTR 0.40 TCGA-CK-5913-01 11 118916267 118916267 A G HYOU1 3'UTR 0.33 TCGA-CK-5913-01 11 119216272 119216273 - G MFRP Frame_Shift_Ins p.N167Qfs*34 0.37 TCGA-CK-5913-01 11 122735372 122735372 G A CRTAM Silent p.S254S 0.36 TCGA-CK-5913-01 11 122850030 122850030 C T BSX Missense_Mutation p.R133H 0.33 deleterious(0) probably_damaging(0.955) TCGA-CK-5913-01 11 124539368 124539368 C A SIAE Missense_Mutation p.Q39H 0.35 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 11 124739423 124739423 C - ROBO3 Frame_Shift_Del p.R191Afs*31 0.28 TCGA-CK-5913-01 11 125658038 125658038 C T PATE3 5'UTR 0.30 TCGA-CK-5913-01 11 1261133 1261133 G A MUC5B Missense_Mutation p.V1230I 0.39 unknown(0) TCGA-CK-5913-01 11 126147671 126147671 T C FOXRED1 3'UTR 0.30 TCGA-CK-5913-01 11 1262317 1262317 C T MUC5B Missense_Mutation p.R1403W 0.17 unknown(0) TCGA-CK-5913-01 11 128840132 128840132 C T ARHGAP32 Missense_Mutation p.R1645Q 0.40 deleterious(0) probably_damaging(0.99) TCGA-CK-5913-01 11 129752496 129752496 T - NFRKB Frame_Shift_Del p.K336Rfs*13 0.37 TCGA-CK-5913-01 11 130078534 130078534 G A ST14 Missense_Mutation p.G742S 0.36 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 11 17632230 17632230 C T OTOG Missense_Mutation p.P1807S 0.30 benign(0.064) TCGA-CK-5913-01 11 20178719 20178719 C T DBX1 Missense_Mutation p.R179Q 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-CK-5913-01 11 3050639 3050639 T C CARS Missense_Mutation p.D279G 0.12 tolerated(0.09) benign(0.371) TCGA-CK-5913-01 11 3125477 3125477 C T OSBPL5 Missense_Mutation p.R397H 0.40 deleterious(0) probably_damaging(0.973) TCGA-CK-5913-01 11 33309022 33309025 TGTT - HIPK3 Frame_Shift_Del p.C356Qfs*24 0.40 TCGA-CK-5913-01 11 46637166 46637166 G T HARBI1 Missense_Mutation p.L208I 0.39 tolerated(0.15) benign(0.154) TCGA-CK-5913-01 11 4674217 4674217 G - OR51E1 Frame_Shift_Del p.A156Lfs*3 0.34 TCGA-CK-5913-01 11 47436677 47436677 T C SLC39A13 Missense_Mutation p.V336A 0.17 deleterious(0) probably_damaging(0.928) TCGA-CK-5913-01 11 47594601 47594601 G A KBTBD4 Missense_Mutation p.R496W 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5913-01 11 47736253 47736253 T A AGBL2 5'UTR 0.11 TCGA-CK-5913-01 11 48177606 48177606 C T PTPRJ Missense_Mutation p.R1125C 0.28 deleterious(0.01) probably_damaging(0.973) TCGA-CK-5913-01 11 49831387 49831387 C T RP11-707M1.1 RNA 0.22 TCGA-CK-5913-01 11 5253938 5253938 C T HBD 3'Flank 0.29 TCGA-CK-5913-01 11 55371071 55371071 G - OR4C11 Frame_Shift_Del p.P260Rfs*28 0.25 TCGA-CK-5913-01 11 55860902 55860902 T G OR8I2 Missense_Mutation p.L40W 0.40 deleterious(0.02) benign(0.017) TCGA-CK-5913-01 11 55890020 55890020 A G OR8H3 Missense_Mutation p.T58A 0.13 deleterious(0) possibly_damaging(0.566) TCGA-CK-5913-01 11 56380542 56380542 G T OR5M1 Missense_Mutation p.T146N 0.39 deleterious(0.02) possibly_damaging(0.493) TCGA-CK-5913-01 11 5685993 5685993 C T TRIM5 3'UTR 0.42 TCGA-CK-5913-01 11 60739277 60739277 C T CD6 5'UTR 0.38 TCGA-CK-5913-01 11 62201360 62201360 A C AHNAK Missense_Mutation p.L149R 0.09 deleterious_low_confidence(0) benign(0.108) TCGA-CK-5913-01 11 62289523 62289523 C T AHNAK Silent p.L4122L 0.16 TCGA-CK-5913-01 11 62289525 62289525 G A AHNAK Silent p.L4122L 0.17 TCGA-CK-5913-01 11 63276019 63276019 G A LGALS12 Intron 0.19 TCGA-CK-5913-01 11 64065619 64065619 G A KCNK4 Silent p.P233P 0.33 TCGA-CK-5913-01 11 64137854 64137854 G A RPS6KA4 Missense_Mutation p.R652Q 0.30 tolerated(0.91) benign(0.019) TCGA-CK-5913-01 11 64457902 64457902 G A NRXN2 Silent p.A275A 0.31 TCGA-CK-5913-01 11 6477889 6477889 C T TRIM3 Missense_Mutation p.R356H 0.18 deleterious(0.01) probably_damaging(0.939) TCGA-CK-5913-01 11 64794983 64794983 C T SNX15 5'UTR 0.31 TCGA-CK-5913-01 11 66100002 66100002 G A RIN1 Silent p.L699L 0.38 TCGA-CK-5913-01 11 66512376 66512376 G A C11orf80 Missense_Mutation p.V55M 0.11 deleterious(0.02) possibly_damaging(0.791) TCGA-CK-5913-01 11 67166084 67166084 C T PPP1CA Silent p.K316K 0.19 TCGA-CK-5913-01 11 68029107 68029107 C - C11orf24 3'UTR 0.37 TCGA-CK-5913-01 11 73427340 73427340 A G RAB6A Silent p.V119V 0.19 TCGA-CK-5913-01 11 75898095 75898095 C T WNT11 3'UTR 0.24 TCGA-CK-5913-01 11 76751257 76751257 G A B3GNT6 Missense_Mutation p.G221D 0.33 deleterious(0.01) possibly_damaging(0.874) TCGA-CK-5913-01 11 76867058 76867058 C - MYO7A Frame_Shift_Del p.H133Tfs*13 0.32 TCGA-CK-5913-01 11 8190448 8190448 C T RIC3 Missense_Mutation p.R30H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 11 8640308 8640308 G A TRIM66 Nonsense_Mutation p.R1223* 0.39 TCGA-CK-5913-01 11 88780859 88780859 C T GRM5 Missense_Mutation p.R61H 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-CK-5913-01 11 8953774 8953774 C T C11orf16 Missense_Mutation p.G28S 0.24 tolerated(0.56) benign(0.008) TCGA-CK-5913-01 11 92622362 92622362 A G FAT3 Missense_Mutation p.I4353M 0.07 possibly_damaging(0.881) TCGA-CK-5913-01 11 94602448 94602448 C A AMOTL1 Silent p.A858A 0.18 TCGA-CK-5913-01 11 9861105 9861105 C T SBF2 Missense_Mutation p.R1132H 0.37 deleterious(0.02) benign(0.032) TCGA-CK-5913-01 12 10583775 10583775 G A KLRC2 Nonsense_Mutation p.R213* 0.24 TCGA-CK-5913-01 12 107090115 107090115 G - RFX4 Frame_Shift_Del p.V251Cfs*8 0.19 TCGA-CK-5913-01 12 108918092 108918092 C T SART3 Splice_Site p.X905_splice 0.37 TCGA-CK-5913-01 12 109094946 109094946 A G CORO1C Missense_Mutation p.I50T 0.15 tolerated(0.67) possibly_damaging(0.658) TCGA-CK-5913-01 12 109278816 109278816 G A DAO Missense_Mutation p.G12R 0.27 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 12 110012622 110012622 G T MVK 5'UTR 0.40 TCGA-CK-5913-01 12 113448034 113448034 T C OAS2 Intron 0.27 TCGA-CK-5913-01 12 113759071 113759071 T C SLC8B1 Missense_Mutation p.Y80C 0.13 deleterious(0) probably_damaging(0.95) TCGA-CK-5913-01 12 114836462 114836462 G A TBX5 Silent p.P142P 0.37 TCGA-CK-5913-01 12 116421304 116421304 T C MED13L Missense_Mutation p.I1525V 0.09 tolerated(1) unknown(0) TCGA-CK-5913-01 12 116972565 116972565 G T LINC00173 RNA 0.38 TCGA-CK-5913-01 12 117703230 117703230 C - NOS1 Frame_Shift_Del p.G676Afs*64 0.48 TCGA-CK-5913-01 12 118020137 118020137 G A KSR2 Missense_Mutation p.P400L 0.29 tolerated(0.08) probably_damaging(1) TCGA-CK-5913-01 12 118474208 118474208 C T WSB2 Silent p.T256T 0.35 TCGA-CK-5913-01 12 120567152 120567152 G A GCN1L1 Silent p.T2606T 0.31 TCGA-CK-5913-01 12 121880098 121880098 C A KDM2B Missense_Mutation p.S1049I 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-CK-5913-01 12 122018017 122018017 G - KDM2B Intron 0.13 TCGA-CK-5913-01 12 122826013 122826013 G A CLIP1 Missense_Mutation p.R580W 0.33 deleterious(0.01) possibly_damaging(0.556) TCGA-CK-5913-01 12 130921801 130921801 C T RIMBP2 Silent p.T547T 0.50 TCGA-CK-5913-01 12 132322707 132322707 G A MMP17 Intron 0.32 TCGA-CK-5913-01 12 13240924 13240924 A T GSG1 Missense_Mutation p.L161Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-CK-5913-01 12 132512668 132512668 G A EP400 Missense_Mutation p.C1739Y 0.43 unknown(0) TCGA-CK-5913-01 12 132862846 132862846 G A GALNT9 Missense_Mutation p.R137W 0.24 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 12 14018756 14018756 G A GRIN2B Silent p.G129G 0.40 TCGA-CK-5913-01 12 1943779 1943779 C T LRTM2 Silent p.Y335Y 0.26 TCGA-CK-5913-01 12 21176140 21176140 G T SLCO1B7 Nonsense_Mutation p.G169* 0.33 TCGA-CK-5913-01 12 25034332 25034332 A T BCAT1 Nonsense_Mutation p.L110* 0.34 TCGA-CK-5913-01 12 25047269 25047269 G T BCAT1 Silent p.I85I 0.34 TCGA-CK-5913-01 12 25260772 25260772 G T LRMP Missense_Mutation p.W426C 0.07 tolerated(0.1) probably_damaging(1) TCGA-CK-5913-01 12 25260832 25260832 A C LRMP Silent p.A446A 0.33 TCGA-CK-5913-01 12 2797918 2797918 C T CACNA1C Silent p.H2078H 0.29 TCGA-CK-5913-01 12 33592483 33592483 T - SYT10 5'UTR 0.27 TCGA-CK-5913-01 12 351879 351879 C T SLC6A13 Missense_Mutation p.V127I 0.08 tolerated(1) benign(0.001) TCGA-CK-5913-01 12 40740636 40740636 A G LRRK2 Missense_Mutation p.Y2064C 0.35 deleterious(0) probably_damaging(0.98) TCGA-CK-5913-01 12 40916361 40916361 T - MUC19 Intron 0.42 TCGA-CK-5913-01 12 40919319 40919319 A G MUC19 Intron 0.42 TCGA-CK-5913-01 12 44194315 44194315 A G TWF1 Missense_Mutation p.Y101H 0.31 deleterious(0.01) probably_damaging(0.968) TCGA-CK-5913-01 12 46315920 46315920 C T SCAF11 Missense_Mutation p.A1435T 0.40 deleterious(0) probably_damaging(0.979) TCGA-CK-5913-01 12 46325319 46325320 - A SCAF11 Frame_Shift_Ins p.P271Sfs*56 0.25 TCGA-CK-5913-01 12 465684 465684 C T KDM5A Missense_Mutation p.S231N 0.28 tolerated(0.38) benign(0.003) TCGA-CK-5913-01 12 46601386 46601386 T - SLC38A1 Frame_Shift_Del p.K136Sfs*14 0.25 TCGA-CK-5913-01 12 4736172 4736172 C T AKAP3 Silent p.P632P 0.33 TCGA-CK-5913-01 12 47629932 47629932 A G PCED1B Silent p.S362S 0.10 TCGA-CK-5913-01 12 48174776 48174776 C T SLC48A1 3'UTR 0.25 TCGA-CK-5913-01 12 49412515 49412515 C A PRKAG1 Silent p.T3T 0.28 TCGA-CK-5913-01 12 49484980 49484980 C T DHH Missense_Mutation p.A166T 0.37 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 12 49936542 49936542 C T KCNH3 Missense_Mutation p.R167W 0.35 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 12 50848191 50848191 A - LARP4 Frame_Shift_Del p.N373Ifs*3 0.20 TCGA-CK-5913-01 12 52842644 52842644 G A KRT6B Silent p.I395I 0.36 TCGA-CK-5913-01 12 53861136 53861136 A G PCBP2 Intron 0.13 TCGA-CK-5913-01 12 53880958 53880958 G - MAP3K12 Frame_Shift_Del p.P73Lfs*62 0.22 TCGA-CK-5913-01 12 53899460 53899460 C T TARBP2 Nonsense_Mutation p.R257* 0.16 TCGA-CK-5913-01 12 54107541 54107541 G A CALCOCO1 Missense_Mutation p.P579S 0.43 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 12 56527917 56527917 C A ESYT1 Silent p.P509P 0.38 TCGA-CK-5913-01 12 56532266 56532266 C T ESYT1 Missense_Mutation p.R816W 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-CK-5913-01 12 56661465 56661465 G A COQ10A Intron 0.45 TCGA-CK-5913-01 12 57137864 57137864 A T PRIM1 Missense_Mutation p.I208N 0.28 deleterious(0.01) benign(0.13) TCGA-CK-5913-01 12 57323335 57323335 C T SDR9C7 Missense_Mutation p.R188H 0.38 deleterious(0.02) benign(0.209) TCGA-CK-5913-01 12 57457028 57457028 T C TMEM194A Missense_Mutation p.Q285R 0.35 tolerated(0.06) probably_damaging(0.932) TCGA-CK-5913-01 12 57522831 57522831 G A LRP1 Intron 0.34 TCGA-CK-5913-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.43 TCGA-CK-5913-01 12 57866344 57866344 G A ARHGAP9 Silent p.L718L 0.37 TCGA-CK-5913-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.44 TCGA-CK-5913-01 12 57927740 57927740 G A DCTN2 Missense_Mutation p.A227V 0.40 tolerated(0.08) possibly_damaging(0.548) TCGA-CK-5913-01 12 6091103 6091103 C T VWF Missense_Mutation p.R2379H 0.49 deleterious(0) possibly_damaging(0.84) TCGA-CK-5913-01 12 62861088 62861088 C A MON2 Missense_Mutation p.P34H 0.30 tolerated(0.34) benign(0.213) TCGA-CK-5913-01 12 64823858 64823858 C T XPOT Silent p.S589S 0.33 TCGA-CK-5913-01 12 6495552 6495552 T C LTBR Silent p.T203T 0.12 TCGA-CK-5913-01 12 70949049 70949049 C A PTPRB Missense_Mutation p.K1678N 0.09 deleterious(0) probably_damaging(0.979) TCGA-CK-5913-01 12 70953023 70953023 G C PTPRB Intron 0.32 TCGA-CK-5913-01 12 72008676 72008676 C A ZFC3H1 Missense_Mutation p.E1766D 0.35 tolerated(0.7) benign(0.012) TCGA-CK-5913-01 12 72013160 72013161 - A ZFC3H1 Frame_Shift_Ins p.L1693Ffs*10 0.09 TCGA-CK-5913-01 12 72372851 72372851 C A TPH2 Missense_Mutation p.L309I 0.40 tolerated(0.08) possibly_damaging(0.8) TCGA-CK-5913-01 12 7635262 7635262 C T CD163 Missense_Mutation p.R1075Q 0.08 tolerated(0.61) benign(0.007) TCGA-CK-5913-01 12 79611354 79611354 G A SYT1 Missense_Mutation p.A19T 0.38 tolerated(0.71) possibly_damaging(0.499) TCGA-CK-5913-01 12 7982418 7982418 C T SLC2A14 Missense_Mutation p.G176S 0.25 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 12 83526052 83526052 G A TMTC2 Missense_Mutation p.E799K 0.40 deleterious(0.02) probably_damaging(0.989) TCGA-CK-5913-01 12 85450035 85450035 A - LRRIQ1 Frame_Shift_Del p.K490Nfs*28 0.27 TCGA-CK-5913-01 12 8630102 8630103 - T CLEC6A 3'UTR 0.20 TCGA-CK-5913-01 12 88483138 88483138 A G CEP290 Missense_Mutation p.Y1234H 0.10 benign(0.005) TCGA-CK-5913-01 12 9242597 9242597 G A A2M Silent p.S873S 0.25 TCGA-CK-5913-01 12 9313026 9313026 C T PZP Missense_Mutation p.C978Y 0.20 deleterious(0.01) benign(0.015) TCGA-CK-5913-01 13 103396690 103396691 - T LINC00283 RNA 0.35 TCGA-CK-5913-01 13 103718355 103718355 G A SLC10A2 Missense_Mutation p.T82I 0.39 tolerated(0.22) benign(0.007) TCGA-CK-5913-01 13 107209998 107209998 A G ARGLU1 Intron 0.15 TCGA-CK-5913-01 13 108886230 108886231 - T ABHD13 3'UTR 0.24 TCGA-CK-5913-01 13 111290675 111290675 G A CARKD Missense_Mutation p.R327Q 0.42 deleterious_low_confidence(0) benign(0.16) TCGA-CK-5913-01 13 111290749 111290749 G A CARKD Missense_Mutation p.V352I 0.45 tolerated_low_confidence(1) benign(0) TCGA-CK-5913-01 13 114303659 114303659 G T ATP4B 3'UTR 0.36 TCGA-CK-5913-01 13 115048386 115048387 - T UPF3A Frame_Shift_Ins p.D132* 0.28 TCGA-CK-5913-01 13 24304513 24304513 C T MIPEP Missense_Mutation p.E706K 0.31 deleterious(0.01) possibly_damaging(0.651) TCGA-CK-5913-01 13 25157668 25157668 G A RP11-556N21.1 RNA 0.10 TCGA-CK-5913-01 13 32913119 32913119 A - BRCA2 Frame_Shift_Del p.N1544Tfs*24 0.16 TCGA-CK-5913-01 13 37271799 37271799 T C SERTM1 3'UTR 0.29 TCGA-CK-5913-01 13 38137316 38137316 A G POSTN 3'UTR 0.35 TCGA-CK-5913-01 13 41383850 41383850 G A SLC25A15 3'UTR 0.37 TCGA-CK-5913-01 13 45563331 45563332 - G NUFIP1 Frame_Shift_Ins p.F81Lfs*20 0.38 TCGA-CK-5913-01 13 50591705 50591705 G A TRIM13 3'Flank 0.40 TCGA-CK-5913-01 13 52343211 52343211 G A DHRS12 Intron 0.18 TCGA-CK-5913-01 13 58208162 58208162 G C PCDH17 Silent p.V494V 0.31 TCGA-CK-5913-01 13 58208600 58208600 G A PCDH17 Silent p.P640P 0.35 TCGA-CK-5913-01 13 61987430 61987430 G A PCDH20 Missense_Mutation p.R268C 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-CK-5913-01 13 72014803 72014803 G A DACH1 Missense_Mutation p.T704I 0.33 benign(0.012) TCGA-CK-5913-01 13 86367978 86367986 TCTTCTTCT CTTCTTC SLITRK6 3'UTR 0.34 TCGA-CK-5913-01 13 96529620 96529620 T C UGGT2 Splice_Site p.X1130_splice 0.10 TCGA-CK-5913-01 13 98637772 98637772 A C IPO5 Missense_Mutation p.K108T 0.39 deleterious(0.01) probably_damaging(0.935) TCGA-CK-5913-01 13 98655135 98655135 G A IPO5 Silent p.L465L 0.24 TCGA-CK-5913-01 14 100758882 100758882 A G SLC25A29 Missense_Mutation p.L217P 0.22 deleterious(0) probably_damaging(0.934) TCGA-CK-5913-01 14 102916187 102916187 C T TECPR2 Silent p.V1099V 0.45 TCGA-CK-5913-01 14 104165518 104165518 T C XRCC3 Splice_Site p.X259_splice 0.21 TCGA-CK-5913-01 14 104643005 104643005 G A KIF26A Missense_Mutation p.A1294T 0.30 tolerated(0.15) benign(0.001) TCGA-CK-5913-01 14 105416494 105416494 C T AHNAK2 Missense_Mutation p.G1765D 0.42 possibly_damaging(0.674) TCGA-CK-5913-01 14 105517957 105517957 C T GPR132 Missense_Mutation p.V173I 0.33 tolerated(0.85) benign(0.053) TCGA-CK-5913-01 14 105818761 105818761 G A PACS2 Missense_Mutation p.S85N 0.11 tolerated(0.08) benign(0.087) TCGA-CK-5913-01 14 105833691 105833691 G A PACS2 Missense_Mutation p.G189S 0.15 tolerated(0.59) benign(0.032) TCGA-CK-5913-01 14 20215879 20215879 G C OR4Q3 Missense_Mutation p.C98S 0.40 deleterious(0) probably_damaging(0.994) TCGA-CK-5913-01 14 20483279 20483279 T A OR4K14 Missense_Mutation p.N25I 0.36 tolerated(1) benign(0.001) TCGA-CK-5913-01 14 20763953 20763953 G T TTC5 Missense_Mutation p.L253M 0.09 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 14 20764554 20764554 C T TTC5 Missense_Mutation p.A231T 0.47 deleterious(0) probably_damaging(0.982) TCGA-CK-5913-01 14 20898129 20898129 G A KLHL33 Missense_Mutation p.R236W 0.43 deleterious(0.01) possibly_damaging(0.513) TCGA-CK-5913-01 14 24898055 24898055 G - CBLN3 Frame_Shift_Del p.P69Lfs*35 0.14 TCGA-CK-5913-01 14 27066720 27066720 T C NOVA1 5'UTR 0.21 TCGA-CK-5913-01 14 28733846 28733846 G T BNIP3P1 RNA 0.25 TCGA-CK-5913-01 14 32562451 32562451 G A ARHGAP5 Missense_Mutation p.R859Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 14 35592395 35592395 T C KIAA0391 5'UTR 0.20 TCGA-CK-5913-01 14 37050411 37050411 A G NKX2-8 Missense_Mutation p.L139P 0.29 deleterious(0) probably_damaging(0.949) TCGA-CK-5913-01 14 38016275 38016275 T A MIPOL1 3'UTR 0.20 TCGA-CK-5913-01 14 38679655 38679655 A G SSTR1 Missense_Mutation p.Y354C 0.10 tolerated(0.21) probably_damaging(0.984) TCGA-CK-5913-01 14 38724650 38724650 C T CLEC14A Missense_Mutation p.R193H 0.30 tolerated(0.12) benign(0.067) TCGA-CK-5913-01 14 39745995 39745995 A - CTAGE5 Intron 0.28 TCGA-CK-5913-01 14 45468648 45468648 T C FAM179B Silent p.S762S 0.39 TCGA-CK-5913-01 14 45497483 45497483 T A FAM179B Missense_Mutation p.N1203K 0.16 tolerated(0.06) benign(0.062) TCGA-CK-5913-01 14 47310988 47310988 A - MDGA2 3'UTR 0.47 TCGA-CK-5913-01 14 50218392 50218392 A - KLHDC1 Frame_Shift_Del p.I377* 0.09 TCGA-CK-5913-01 14 51372047 51372047 T C PYGL 3'UTR 0.40 TCGA-CK-5913-01 14 51464729 51464729 G A TRIM9 Intron 0.33 TCGA-CK-5913-01 14 52922058 52922058 G A TXNDC16 Missense_Mutation p.A609V 0.36 tolerated(0.1) possibly_damaging(0.516) TCGA-CK-5913-01 14 55215577 55215577 G A SAMD4A Missense_Mutation p.A342T 0.35 tolerated(0.11) possibly_damaging(0.636) TCGA-CK-5913-01 14 55511543 55511543 C T SOCS4 3'UTR 0.13 TCGA-CK-5913-01 14 60193882 60193882 T C RTN1 Missense_Mutation p.E507G 0.35 deleterious(0.02) benign(0.004) TCGA-CK-5913-01 14 60212538 60212539 - T RTN1 Frame_Shift_Ins p.E302* 0.27 TCGA-CK-5913-01 14 69262957 69262957 G - ZFP36L1 5'Flank 0.32 TCGA-CK-5913-01 14 69522263 69522263 G A DCAF5 Silent p.S380S 0.39 TCGA-CK-5913-01 14 71202740 71202741 - G MAP3K9 Frame_Shift_Ins p.Q618Sfs*4 0.11 TCGA-CK-5913-01 14 71428992 71428992 C - PCNX Frame_Shift_Del p.P139Qfs*13 0.08 TCGA-CK-5913-01 14 74058956 74058956 T C ACOT4 Missense_Mutation p.V98A 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-CK-5913-01 14 74824462 74824462 C T VRTN Missense_Mutation p.R326W 0.59 deleterious(0) possibly_damaging(0.53) TCGA-CK-5913-01 14 75052738 75052738 G A LTBP2 Missense_Mutation p.R217C 0.14 deleterious(0) probably_damaging(0.912) TCGA-CK-5913-01 14 75149996 75149996 T C AREL1 Intron 0.16 TCGA-CK-5913-01 14 75264441 75264441 G - YLPM1 Frame_Shift_Del p.P816Qfs*13 0.34 TCGA-CK-5913-01 14 76620670 76620670 T - GPATCH2L Intron 0.28 TCGA-CK-5913-01 14 86088636 86088636 C T FLRT2 Nonsense_Mutation p.Q260* 0.38 TCGA-CK-5913-01 14 89093274 89093274 G T EML5 Missense_Mutation p.L1550M 0.36 deleterious(0.01) probably_damaging(0.975) TCGA-CK-5913-01 14 91633606 91633606 C A C14orf159 Silent p.S47S 0.35 TCGA-CK-5913-01 14 91760648 91760648 G A CCDC88C Silent p.L1327L 0.30 TCGA-CK-5913-01 14 92472698 92472698 T - TRIP11 Frame_Shift_Del p.K541Rfs*17 0.29 TCGA-CK-5913-01 14 96993828 96993828 C A PAPOLA Silent p.T131T 0.06 TCGA-CK-5913-01 14 99697729 99697729 C T BCL11B Missense_Mutation p.G198D 0.43 tolerated(0.12) possibly_damaging(0.827) TCGA-CK-5913-01 15 20740044 20740044 T A GOLGA6L6 Missense_Mutation p.E569V 0.23 unknown(0) TCGA-CK-5913-01 15 23810854 23810854 G A MKRN3 5'UTR 0.29 TCGA-CK-5913-01 15 28493767 28493767 G A HERC2 Missense_Mutation p.R1056C 0.35 possibly_damaging(0.854) TCGA-CK-5913-01 15 31793975 31793975 G A OTUD7A Silent p.C356C 0.20 TCGA-CK-5913-01 15 31851346 31851346 C T OTUD7A Missense_Mutation p.V126I 0.40 deleterious(0.02) benign(0.352) TCGA-CK-5913-01 15 34150030 34150030 T C RYR3 Missense_Mutation p.V4686A 0.35 possibly_damaging(0.511) TCGA-CK-5913-01 15 34628900 34628900 A - SLC12A6 5'UTR 0.17 TCGA-CK-5913-01 15 39882722 39882722 T C THBS1 Silent p.N717N 0.12 TCGA-CK-5913-01 15 40631782 40631782 C - C15orf52 Frame_Shift_Del p.M99Wfs*3 0.51 TCGA-CK-5913-01 15 40866228 40866228 A G RPUSD2 Missense_Mutation p.E469G 0.32 tolerated(0.1) benign(0.055) TCGA-CK-5913-01 15 41276520 41276520 T - INO80 Frame_Shift_Del p.R1318Gfs*6 0.15 TCGA-CK-5913-01 15 42054012 42054012 C T MGA Missense_Mutation p.R2492W 0.38 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 15 42434107 42434107 C T PLA2G4F 3'UTR 0.55 TCGA-CK-5913-01 15 45003782 45003782 T C B2M Missense_Mutation p.L13P 0.28 deleterious(0.02) possibly_damaging(0.543) TCGA-CK-5913-01 15 45007619 45007619 A G B2M Splice_Site p.X23_splice 0.39 TCGA-CK-5913-01 15 45389859 45389859 G A DUOX2 Missense_Mutation p.R1216W 0.22 deleterious(0.02) probably_damaging(0.943) TCGA-CK-5913-01 15 45456980 45456980 C T DUOX1 Missense_Mutation p.R1513W 0.17 deleterious(0.02) benign(0.033) TCGA-CK-5913-01 15 48766478 48766478 T C FBN1 Missense_Mutation p.Y1395C 0.27 probably_damaging(0.954) TCGA-CK-5913-01 15 48936953 48936953 C T FBN1 Missense_Mutation p.R5H 0.39 benign(0.02) TCGA-CK-5913-01 15 49659679 49659679 T A FAM227B Missense_Mutation p.T413S 0.28 tolerated(0.87) benign(0.001) TCGA-CK-5913-01 15 64017519 64017519 G A HERC1 Silent p.D1180D 0.39 TCGA-CK-5913-01 15 64747347 64747347 A C TRIP4 3'UTR 0.08 TCGA-CK-5913-01 15 70349849 70349849 G A TLE3 Silent p.A403A 0.33 TCGA-CK-5913-01 15 70356793 70356793 C T TLE3 Silent p.A198A 0.22 TCGA-CK-5913-01 15 72546813 72546813 T C PARP6 Missense_Mutation p.I392V 0.28 tolerated(0.18) benign(0.065) TCGA-CK-5913-01 15 73996258 73996258 G A CD276 Missense_Mutation p.R331H 0.56 deleterious(0.04) benign(0.234) TCGA-CK-5913-01 15 74428580 74428580 C T ISLR2 3'UTR 0.31 TCGA-CK-5913-01 15 74529049 74529049 G T CCDC33 5'UTR 0.30 TCGA-CK-5913-01 15 75249423 75249423 T C RPP25 5'UTR 0.30 TCGA-CK-5913-01 15 75501141 75501141 C A C15orf39 Missense_Mutation p.R918S 0.45 deleterious(0.02) possibly_damaging(0.851) TCGA-CK-5913-01 15 76866501 76866502 - T SCAPER Frame_Shift_Ins p.E946Rfs*19 0.11 TCGA-CK-5913-01 15 79045497 79045497 C T RP11-160C18.4 RNA 0.42 TCGA-CK-5913-01 15 80762742 80762742 C T ARNT2 Silent p.G126G 0.43 TCGA-CK-5913-01 15 81592529 81592529 C G IL16 Silent p.G954G 0.50 TCGA-CK-5913-01 16 1254147 1254147 C A CACNA1H Missense_Mutation p.L714I 0.15 tolerated(0.16) benign(0.073) TCGA-CK-5913-01 16 1394258 1394258 C A BAIAP3 Silent p.P549P 0.09 TCGA-CK-5913-01 16 15835329 15835329 C T MYH11 Silent p.Q957Q 0.40 TCGA-CK-5913-01 16 1996721 1996721 G A RPL3L Missense_Mutation p.R286C 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-CK-5913-01 16 2126498 2126498 C T TSC2 Missense_Mutation p.R917W 0.28 deleterious(0) probably_damaging(0.991) TCGA-CK-5913-01 16 2222203 2222203 G A TRAF7 Missense_Mutation p.V163M 0.38 deleterious(0.01) possibly_damaging(0.714) TCGA-CK-5913-01 16 2222368 2222368 G A TRAF7 Missense_Mutation p.A218T 0.65 tolerated(0.6) benign(0.014) TCGA-CK-5913-01 16 2257301 2257301 C A MLST8 Silent p.A176A 0.20 TCGA-CK-5913-01 16 23197736 23197736 C T SCNN1G Silent p.R48R 0.50 TCGA-CK-5913-01 16 239292 239292 G A LUC7L Missense_Mutation p.R341W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-CK-5913-01 16 24226019 24226019 G A PRKCB Missense_Mutation p.R635H 0.35 deleterious(0.02) benign(0.02) TCGA-CK-5913-01 16 28847651 28847651 T C ATXN2L Silent p.C1048C 0.38 TCGA-CK-5913-01 16 29815416 29815416 C T KIF22 Intron 0.33 TCGA-CK-5913-01 16 30594912 30594912 G A ZNF785 Intron 0.60 TCGA-CK-5913-01 16 30749082 30749084 CCT - SRCAP In_Frame_Del p.S2576del 0.42 TCGA-CK-5913-01 16 30749619 30749619 G A SRCAP Missense_Mutation p.R2753Q 0.28 unknown(0) TCGA-CK-5913-01 16 31105680 31105680 G T VKORC1 Intron 0.39 TCGA-CK-5913-01 16 31120632 31120632 C T BCKDK Missense_Mutation p.R30C 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-CK-5913-01 16 32893251 32893251 C - RP11-989E6.3 5'Flank 0.42 TCGA-CK-5913-01 16 3293492 3293492 C T MEFV Nonsense_Mutation p.W665* 0.29 TCGA-CK-5913-01 16 3297199 3297199 C T MEFV Silent p.Q468Q 0.28 TCGA-CK-5913-01 16 48138147 48138148 - A ABCC12 Frame_Shift_Ins p.M936Yfs*84 0.40 TCGA-CK-5913-01 16 4908617 4908617 G T UBN1 Missense_Mutation p.G129W 0.40 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 16 49671031 49671031 G A ZNF423 Silent p.L678L 0.31 TCGA-CK-5913-01 16 50257163 50257163 C T PAPD5 Nonsense_Mutation p.R401* 0.36 TCGA-CK-5913-01 16 54317531 54317531 T - IRX3 3'UTR 0.49 TCGA-CK-5913-01 16 56660437 56660437 A G MT1E Missense_Mutation p.K30E 0.40 deleterious(0.02) possibly_damaging(0.621) TCGA-CK-5913-01 16 58587741 58587741 C T CNOT1 Missense_Mutation p.C972Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-CK-5913-01 16 65032472 65032472 G T CDH11 Silent p.S172S 0.30 TCGA-CK-5913-01 16 66600756 66600756 G A CMTM1 Missense_Mutation p.V114M 0.39 deleterious(0) benign(0.272) TCGA-CK-5913-01 16 66997759 66997759 G A CES3 Missense_Mutation p.D161N 0.30 deleterious(0.03) possibly_damaging(0.895) TCGA-CK-5913-01 16 67270570 67270570 G A FHOD1 Silent p.P403P 0.35 TCGA-CK-5913-01 16 67354525 67354525 T C KCTD19 Silent p.Q89Q 0.11 TCGA-CK-5913-01 16 67679663 67679663 A G RLTPR Missense_Mutation p.T57A 0.25 tolerated(1) benign(0.004) TCGA-CK-5913-01 16 69199352 69199352 A G CIRH1A Missense_Mutation p.I586V 0.18 tolerated(0.36) benign(0.02) TCGA-CK-5913-01 16 705100 705100 T C WDR90 Silent p.T503T 0.11 TCGA-CK-5913-01 16 710629 710629 C T WDR90 Silent p.P1102P 0.50 TCGA-CK-5913-01 16 71890201 71890201 A G ATXN1L 3'UTR 0.09 TCGA-CK-5913-01 16 74920199 74920199 G A WDR59 Nonsense_Mutation p.R839* 0.31 TCGA-CK-5913-01 16 81142202 81142202 G T RNU6-1191P 5'Flank 0.31 TCGA-CK-5913-01 16 81248667 81248667 G T PKD1L2 Missense_Mutation p.P199H 0.14 tolerated(0.08) probably_damaging(0.982) TCGA-CK-5913-01 16 84695404 84695404 G A KLHL36 Missense_Mutation p.E506K 0.24 tolerated(0.24) possibly_damaging(0.574) TCGA-CK-5913-01 16 85704704 85704704 G A GSE1 Silent p.A1173A 0.21 TCGA-CK-5913-01 16 86582113 86582113 G A MTHFSD Missense_Mutation p.P103L 0.31 tolerated(0.07) benign(0.118) TCGA-CK-5913-01 16 87866620 87866620 C T SLC7A5 Missense_Mutation p.V494I 0.25 tolerated(0.43) benign(0.006) TCGA-CK-5913-01 16 88066789 88066789 G A BANP Missense_Mutation p.A372T 0.19 tolerated_low_confidence(0.62) benign(0.002) TCGA-CK-5913-01 16 88504852 88504852 G - ZNF469 Frame_Shift_Del p.R3634Efs*58 0.42 TCGA-CK-5913-01 16 88901652 88901652 G A GALNS Silent p.N289N 0.29 TCGA-CK-5913-01 16 89334913 89334913 G A AC137932.1 Missense_Mutation p.R132H 0.30 possibly_damaging(0.711) TCGA-CK-5913-01 16 90001339 90001339 C T TUBB3 Silent p.P160P 0.34 TCGA-CK-5913-01 17 10219244 10219244 C T MYH13 Missense_Mutation p.M1279I 0.34 tolerated(0.11) benign(0.001) TCGA-CK-5913-01 17 10300222 10300222 C T MYH8 Silent p.T1420T 0.38 TCGA-CK-5913-01 17 10416085 10416088 GGTG A MYH1 In_Frame_Del p.T308del 0.21 TCGA-CK-5913-01 17 11572799 11572799 C T DNAH9 Missense_Mutation p.S1014L 0.37 benign(0.285) TCGA-CK-5913-01 17 14248618 14248618 C T HS3ST3B1 Silent p.Y276Y 0.35 TCGA-CK-5913-01 17 15952249 15952249 G T NCOR1 Missense_Mutation p.P2149H 0.31 probably_damaging(0.999) TCGA-CK-5913-01 17 17399549 17399549 G A RASD1 5'UTR 0.50 TCGA-CK-5913-01 17 18023724 18023724 C T MYO15A Missense_Mutation p.P537L 0.39 possibly_damaging(0.726) TCGA-CK-5913-01 17 19437294 19437294 G A SLC47A1 Silent p.P14P 0.34 TCGA-CK-5913-01 17 19684352 19684352 G A ULK2 Missense_Mutation p.A902V 0.37 deleterious(0.02) benign(0.032) TCGA-CK-5913-01 17 26655614 26655614 T - IFT20 3'UTR 0.25 TCGA-CK-5913-01 17 26941146 26941146 T C RP11-192H23.4 Missense_Mutation p.T12A 0.38 tolerated_low_confidence(0.66) benign(0.388) TCGA-CK-5913-01 17 27849314 27849314 A G TAOK1 Missense_Mutation p.Q642R 0.35 tolerated(0.19) benign(0.033) TCGA-CK-5913-01 17 28549060 28549060 C T SLC6A4 5'UTR 0.39 TCGA-CK-5913-01 17 28575842 28575842 T - BLMH 3'UTR 0.59 TCGA-CK-5913-01 17 33482368 33482368 C T UNC45B Silent p.A231A 0.33 TCGA-CK-5913-01 17 36872020 36872020 C A MLLT6 Silent p.T325T 0.36 TCGA-CK-5913-01 17 37234224 37234224 A G PLXDC1 Silent p.Y376Y 0.35 TCGA-CK-5913-01 17 3769169 3769169 G C CAMKK1 3'UTR 0.21 TCGA-CK-5913-01 17 38133211 38133211 G T GSDMA Missense_Mutation p.R413I 0.39 tolerated(0.07) probably_damaging(0.987) TCGA-CK-5913-01 17 38510698 38510698 C T RARA Missense_Mutation p.P318S 0.11 tolerated(0.19) probably_damaging(0.974) TCGA-CK-5913-01 17 38545773 38545773 A - TOP2A Frame_Shift_Del p.*1532K 0.29 TCGA-CK-5913-01 17 38711971 38711971 G A CCR7 Missense_Mutation p.R54W 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-CK-5913-01 17 38854446 38854446 T - KRT24 3'UTR 0.39 TCGA-CK-5913-01 17 38907480 38907480 T A KRT25 Silent p.R256R 0.23 TCGA-CK-5913-01 17 39156097 39156097 G A KRTAP3-2 Silent p.C3C 0.42 TCGA-CK-5913-01 17 40327664 40327664 G A KCNH4 Missense_Mutation p.T307I 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-CK-5913-01 17 40330364 40330364 C T KCNH4 Missense_Mutation p.G148R 0.43 tolerated(0.62) benign(0.001) TCGA-CK-5913-01 17 40729485 40729485 G A PSMC3IP Silent p.G43G 0.13 TCGA-CK-5913-01 17 40766966 40766966 G T TUBG1 Missense_Mutation p.M421I 0.24 deleterious(0.01) benign(0.003) TCGA-CK-5913-01 17 41352389 41352389 C - NBR1 Frame_Shift_Del p.L746Wfs*50 0.22 TCGA-CK-5913-01 17 42030670 42030670 C T PYY Missense_Mutation p.R61Q 0.34 deleterious(0) probably_damaging(0.986) TCGA-CK-5913-01 17 42254952 42254952 C T ASB16 Intron 0.19 TCGA-CK-5913-01 17 42272802 42272802 G A ATXN7L3 Silent p.R209R 0.36 TCGA-CK-5913-01 17 43214416 43214416 G A ACBD4 Missense_Mutation p.A109T 0.35 tolerated(0.17) benign(0.108) TCGA-CK-5913-01 17 43530821 43530821 C T PLEKHM1 Silent p.E799E 0.35 TCGA-CK-5913-01 17 440401 440401 C T VPS53 Missense_Mutation p.V628M 0.39 deleterious(0.03) probably_damaging(0.954) TCGA-CK-5913-01 17 45452111 45452111 A G EFCAB13 Missense_Mutation p.Y384C 0.41 deleterious(0) probably_damaging(0.991) TCGA-CK-5913-01 17 4804318 4804318 G T CHRNE Missense_Mutation p.L257M 0.34 tolerated(0.47) probably_damaging(0.997) TCGA-CK-5913-01 17 48050479 48050479 G A DLX4 Missense_Mutation p.R109H 0.54 tolerated(0.15) benign(0.002) TCGA-CK-5913-01 17 48193389 48193389 G A SAMD14 Missense_Mutation p.R189C 0.41 deleterious(0) probably_damaging(0.997) TCGA-CK-5913-01 17 49269577 49269577 T G MBTD1 Missense_Mutation p.K585N 0.36 tolerated(0.07) possibly_damaging(0.478) TCGA-CK-5913-01 17 52991147 52991147 C T TOM1L1 Silent p.S137S 0.34 TCGA-CK-5913-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.35 TCGA-CK-5913-01 17 60069936 60069938 TCT - MED13 In_Frame_Del p.E742del 0.34 TCGA-CK-5913-01 17 61573820 61573820 C T ACE Missense_Mutation p.T1149M 0.39 tolerated(0.14) benign(0.158) TCGA-CK-5913-01 17 61910968 61910970 CTC - SMARCD2 In_Frame_Del p.E432del 0.49 TCGA-CK-5913-01 17 6928472 6928472 C A BCL6B Missense_Mutation p.A281D 0.10 tolerated(0.6) benign(0.042) TCGA-CK-5913-01 17 72846854 72846854 C T GRIN2C Missense_Mutation p.R389H 0.35 deleterious(0) probably_damaging(0.953) TCGA-CK-5913-01 17 73045324 73045324 G T KCTD2 Nonsense_Mutation p.G117* 0.27 TCGA-CK-5913-01 17 73489997 73489997 G T KIAA0195 Nonsense_Mutation p.E803* 0.21 TCGA-CK-5913-01 17 73724500 73724500 T C ITGB4 Missense_Mutation p.F171S 0.35 deleterious(0) probably_damaging(0.962) TCGA-CK-5913-01 17 74275192 74275192 G T QRICH2 Missense_Mutation p.L1450I 0.57 deleterious(0) probably_damaging(0.955) TCGA-CK-5913-01 17 74533591 74533591 G A CYGB Missense_Mutation p.R12C 0.33 deleterious(0.02) probably_damaging(0.983) TCGA-CK-5913-01 17 7536541 7536541 T - SHBG Frame_Shift_Del p.C362Afs*2 0.18 TCGA-CK-5913-01 17 7557458 7557458 C T ATP1B2 Silent p.Y145Y 0.41 TCGA-CK-5913-01 17 76087620 76087620 C T TNRC6C Missense_Mutation p.T1298M 0.44 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 17 7812622 7812622 G A CHD3 Silent p.A1911A 0.36 TCGA-CK-5913-01 17 78222405 78222405 C T SLC26A11 Missense_Mutation p.P485L 0.10 tolerated(1) benign(0.013) TCGA-CK-5913-01 17 7832617 7832617 C - KCNAB3 Frame_Shift_Del p.G46Vfs*33 0.43 TCGA-CK-5913-01 17 78395664 78395665 - C ENDOV Frame_Shift_Ins p.Y91Lfs*150 0.26 TCGA-CK-5913-01 17 79094845 79094845 G A AATK Missense_Mutation p.A964V 0.33 tolerated(0.23) benign(0.027) TCGA-CK-5913-01 17 79414251 79414251 G A RP11-1055B8.7 Missense_Mutation p.G1118E 0.31 benign(0.037) TCGA-CK-5913-01 17 79632317 79632317 C A OXLD1 Missense_Mutation p.A120S 0.34 tolerated(0.07) probably_damaging(0.924) TCGA-CK-5913-01 17 80399097 80399097 G A HEXDC Missense_Mutation p.A403T 0.36 deleterious_low_confidence(0.01) benign(0.096) TCGA-CK-5913-01 17 80400500 80400501 AA - HEXDC 3'UTR 0.18 TCGA-CK-5913-01 17 80904778 80904778 G A B3GNTL1 3'UTR 0.25 TCGA-CK-5913-01 17 8647014 8647014 C T CCDC42 Missense_Mutation p.R75H 0.13 deleterious(0) probably_damaging(0.939) TCGA-CK-5913-01 17 8790519 8790520 - A PIK3R5 Frame_Shift_Ins p.W600Lfs*7 0.16 TCGA-CK-5913-01 17 9559767 9559767 C T USP43 Silent p.H184H 0.39 TCGA-CK-5913-01 18 10472057 10472057 A G APCDD1 Missense_Mutation p.K258R 0.35 tolerated(0.78) benign(0.068) TCGA-CK-5913-01 18 13029787 13029787 G A CEP192 Silent p.Q392Q 0.08 TCGA-CK-5913-01 18 13438262 13438262 C A LDLRAD4 Silent p.T20T 0.30 TCGA-CK-5913-01 18 14543084 14543084 C A POTEC Missense_Mutation p.R21M 0.28 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-CK-5913-01 18 19076468 19076468 C T GREB1L Missense_Mutation p.T1067M 0.34 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 18 29480948 29480948 G T TRAPPC8 Missense_Mutation p.P477H 0.36 deleterious(0.01) possibly_damaging(0.838) TCGA-CK-5913-01 18 319924 319946 TCAGTAATTGGTTTTCAGTGCTT CAGTAATTGGCTTTCAGTGC COLEC12 3'UTR 0.14 TCGA-CK-5913-01 18 3874183 3874183 G T DLGAP1 Intron 0.35 TCGA-CK-5913-01 18 45566519 45566519 C - ZBTB7C Frame_Shift_Del p.P321Lfs*18 0.36 TCGA-CK-5913-01 18 45567085 45567085 C - ZBTB7C Frame_Shift_Del p.D132Tfs*90 0.42 TCGA-CK-5913-01 18 46163043 46163043 C - CTIF Frame_Shift_Del p.P82Hfs*77 0.62 TCGA-CK-5913-01 18 54423872 54423872 T C WDR7 Missense_Mutation p.L683P 0.16 tolerated(0.46) possibly_damaging(0.502) TCGA-CK-5913-01 18 56050485 56050485 A G NEDD4L Missense_Mutation p.Q787R 0.09 deleterious(0.01) possibly_damaging(0.591) TCGA-CK-5913-01 18 56586013 56586013 C T ZNF532 Missense_Mutation p.T165M 0.43 tolerated(0.14) benign(0.391) TCGA-CK-5913-01 18 67994088 67994088 A G SOCS6 3'UTR 0.16 TCGA-CK-5913-01 19 10224369 10224370 - G P2RY11 Frame_Shift_Ins p.D29Gfs*10 0.17 TCGA-CK-5913-01 19 10246416 10246416 C T DNMT1 Missense_Mutation p.R1590Q 0.20 deleterious(0) possibly_damaging(0.803) TCGA-CK-5913-01 19 10273413 10273413 C T DNMT1 Missense_Mutation p.R313Q 0.21 deleterious_low_confidence(0.03) benign(0.165) TCGA-CK-5913-01 19 10745875 10745875 A G SLC44A2 Silent p.P364P 0.22 TCGA-CK-5913-01 19 11322739 11322739 C T DOCK6 Missense_Mutation p.R1527H 0.26 deleterious(0.05) benign(0.047) TCGA-CK-5913-01 19 11470537 11470537 C T DKFZP761J1410 Missense_Mutation p.P74L 0.41 tolerated(0.46) benign(0.138) TCGA-CK-5913-01 19 11568950 11568950 C T ELAVL3 Silent p.A213A 0.30 TCGA-CK-5913-01 19 11833236 11833236 A G ZNF823 Silent p.H371H 0.36 TCGA-CK-5913-01 19 12405576 12405576 A G ZNF44 5'UTR 0.40 TCGA-CK-5913-01 19 12502590 12502590 A - ZNF799 Frame_Shift_Del p.W208Gfs*34 0.35 TCGA-CK-5913-01 19 1272262 1272262 C T CIRBP Intron 0.49 TCGA-CK-5913-01 19 13255310 13255312 AGA - STX10 Intron 0.38 TCGA-CK-5913-01 19 13265516 13265516 G - IER2 3'UTR 0.11 TCGA-CK-5913-01 19 14208238 14208238 C T PRKACA Missense_Mutation p.A234T 0.13 deleterious(0.04) possibly_damaging(0.736) TCGA-CK-5913-01 19 15198878 15198878 A G OR1I1 Silent p.T334T 0.30 TCGA-CK-5913-01 19 16060212 16060212 G A OR10H4 Missense_Mutation p.R132H 0.36 tolerated(0.25) benign(0.002) TCGA-CK-5913-01 19 16314384 16314384 G - AP1M1 Frame_Shift_Del p.V55Sfs*194 0.31 TCGA-CK-5913-01 19 17008587 17008587 G A CPAMD8 Silent p.N1707N 0.24 TCGA-CK-5913-01 19 17741492 17741492 C T UNC13A Missense_Mutation p.G1166S 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5913-01 19 17954643 17954643 G - JAK3 Frame_Shift_Del p.P84Rfs*63 0.34 TCGA-CK-5913-01 19 18184400 18184400 G - IL12RB1 Frame_Shift_Del p.P237Hfs*5 0.30 TCGA-CK-5913-01 19 2917351 2917351 A T ZNF57 Missense_Mutation p.R244S 0.13 deleterious(0.03) benign(0.075) TCGA-CK-5913-01 19 30506127 30506127 A - URI1 3'UTR 0.44 TCGA-CK-5913-01 19 3207718 3207718 G A NCLN 3'UTR 0.54 TCGA-CK-5913-01 19 34710330 34710331 - G LSM14A Frame_Shift_Ins p.H275Sfs*19 0.18 TCGA-CK-5913-01 19 34712604 34712604 A G LSM14A Silent p.G443G 0.36 TCGA-CK-5913-01 19 3522966 3522966 G A FZR1 5'Flank 0.08 TCGA-CK-5913-01 19 36219960 36219960 G A KMT2B Missense_Mutation p.G1588R 0.27 probably_damaging(0.996) TCGA-CK-5913-01 19 36362171 36362171 C T APLP1 Missense_Mutation p.P153S 0.44 deleterious(0) probably_damaging(0.994) TCGA-CK-5913-01 19 36431400 36431400 C T LRFN3 Missense_Mutation p.P358L 0.44 tolerated(0.56) benign(0.004) TCGA-CK-5913-01 19 36582213 36582213 G T WDR62 Nonsense_Mutation p.E716* 0.37 TCGA-CK-5913-01 19 36583698 36583698 G A WDR62 Missense_Mutation p.R773Q 0.42 tolerated(0.6) benign(0) TCGA-CK-5913-01 19 38187557 38187557 G A ZNF607 3'UTR 0.44 TCGA-CK-5913-01 19 38375481 38375482 - G WDR87 3'Flank 0.21 TCGA-CK-5913-01 19 39191317 39191317 C T ACTN4 Silent p.D80D 0.27 TCGA-CK-5913-01 19 3982314 3982314 C - EEF2 Frame_Shift_Del p.E241Rfs*13 0.30 TCGA-CK-5913-01 19 39868422 39868422 G A SAMD4B Missense_Mutation p.D468N 0.12 deleterious(0) benign(0.439) TCGA-CK-5913-01 19 39899070 39899070 A - ZFP36 Frame_Shift_Del p.T244Pfs*128 0.09 TCGA-CK-5913-01 19 40357631 40357631 A G FCGBP Missense_Mutation p.C5228R 0.29 probably_damaging(1) TCGA-CK-5913-01 19 40382671 40382671 C T FCGBP Silent p.A3405A 0.19 TCGA-CK-5913-01 19 40398008 40398008 G T FCGBP Missense_Mutation p.A2320D 0.16 possibly_damaging(0.887) TCGA-CK-5913-01 19 40419782 40419782 G A FCGBP Missense_Mutation p.P1071L 0.44 probably_damaging(0.99) TCGA-CK-5913-01 19 40554628 40554628 T C ZNF780B Missense_Mutation p.T29A 0.37 tolerated(0.66) possibly_damaging(0.523) TCGA-CK-5913-01 19 41248504 41248504 T C C19orf54 Missense_Mutation p.Y297C 0.09 deleterious(0.04) benign(0.035) TCGA-CK-5913-01 19 41847819 41847819 G A TGFB1 Missense_Mutation p.R277C 0.16 deleterious(0) probably_damaging(0.924) TCGA-CK-5913-01 19 41916544 41916544 C - BCKDHA Frame_Shift_Del p.R40Gfs*23 0.30 TCGA-CK-5913-01 19 42795709 42795709 G A CIC Splice_Site p.X900_splice 0.27 TCGA-CK-5913-01 19 4318422 4318422 G T FSD1 Missense_Mutation p.M293I 0.34 deleterious(0.01) benign(0.039) TCGA-CK-5913-01 19 43568426 43568426 G - PSG2 3'UTR 0.34 TCGA-CK-5913-01 19 44001362 44001362 T C PHLDB3 Missense_Mutation p.S245G 0.38 deleterious(0) possibly_damaging(0.64) TCGA-CK-5913-01 19 4513107 4513107 C T PLIN4 Missense_Mutation p.G275S 0.26 tolerated(0.09) possibly_damaging(0.899) TCGA-CK-5913-01 19 45556129 45556129 C - CLASRP Frame_Shift_Del p.P95Lfs*81 0.30 TCGA-CK-5913-01 19 4557221 4557221 C T SEMA6B Missense_Mutation p.R87H 0.42 deleterious(0.03) possibly_damaging(0.596) TCGA-CK-5913-01 19 45790753 45790753 C T MARK4 Missense_Mutation p.T442M 0.41 deleterious(0.03) benign(0.006) TCGA-CK-5913-01 19 45974052 45974052 G A FOSB Missense_Mutation p.D98N 0.41 tolerated(0.67) possibly_damaging(0.555) TCGA-CK-5913-01 19 45976217 45976217 G A FOSB Missense_Mutation p.G322S 0.35 tolerated(1) probably_damaging(0.97) TCGA-CK-5913-01 19 46057049 46057049 G A OPA3 Intron 0.44 TCGA-CK-5913-01 19 464272 464272 G A ODF3L2 Missense_Mutation p.R148C 0.28 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 19 4956752 4956752 G A UHRF1 RNA 0.32 TCGA-CK-5913-01 19 50363559 50363559 T A PTOV1 3'UTR 0.39 TCGA-CK-5913-01 19 50912052 50912052 G A POLD1 Missense_Mutation p.V596I 0.40 tolerated(0.22) benign(0.053) TCGA-CK-5913-01 19 51227302 51227302 C T CLEC11A Silent p.S96S 0.33 TCGA-CK-5913-01 19 5244118 5244118 C T PTPRS Missense_Mutation p.G455D 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-CK-5913-01 19 54720953 54720953 C T LILRB3 3'UTR 0.19 TCGA-CK-5913-01 19 55543509 55543509 G A GP6 Missense_Mutation p.T108M 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-5913-01 19 55753845 55753845 G A PPP6R1 Silent p.N210N 0.32 TCGA-CK-5913-01 19 56047586 56047586 C T SBK2 Missense_Mutation p.G26S 0.20 tolerated_low_confidence(0.14) unknown(0) TCGA-CK-5913-01 19 56200303 56200305 GGA - EPN1 In_Frame_Del p.E296del 0.36 TCGA-CK-5913-01 19 56466085 56466085 A - NLRP8 Frame_Shift_Del p.K222Rfs*2 0.11 TCGA-CK-5913-01 19 57037185 57037185 C A ZNF471 Missense_Mutation p.S583R 0.35 tolerated(0.88) benign(0.205) TCGA-CK-5913-01 19 57135355 57135355 C T ZNF71 3'UTR 0.37 TCGA-CK-5913-01 19 57802139 57802139 A G ZNF460 Missense_Mutation p.Q77R 0.38 tolerated(0.06) benign(0.022) TCGA-CK-5913-01 19 58320385 58320385 C T ZNF552 Missense_Mutation p.A83T 0.31 tolerated(0.26) benign(0.018) TCGA-CK-5913-01 19 58386126 58386126 C - ZNF814 Frame_Shift_Del p.G211Efs*10 0.17 TCGA-CK-5913-01 19 58386462 58386462 G A ZNF814 Missense_Mutation p.P99L 0.33 tolerated(0.24) benign(0.354) TCGA-CK-5913-01 19 59028171 59028171 A G ZBTB45 Silent p.T290T 0.16 TCGA-CK-5913-01 19 6381473 6381473 G A GTF2F1 Silent p.S305S 0.16 TCGA-CK-5913-01 19 8665945 8665945 C T ADAMTS10 Missense_Mutation p.R226H 0.68 tolerated(0.07) benign(0.267) TCGA-CK-5913-01 19 920393 920393 T C KISS1R Missense_Mutation p.L281P 0.19 deleterious(0) probably_damaging(0.989) TCGA-CK-5913-01 1 100576040 100576040 C A SASS6 Splice_Site p.X224_splice 0.34 TCGA-CK-5913-01 1 109772139 109772139 A G SARS Missense_Mutation p.N131S 0.27 tolerated(0.54) benign(0) TCGA-CK-5913-01 1 109825373 109825373 T C PSRC1 Intron 0.19 TCGA-CK-5913-01 1 11128110 11128110 G A EXOSC10 Missense_Mutation p.S861L 0.35 tolerated_low_confidence(0.08) benign(0.001) TCGA-CK-5913-01 1 111441931 111441931 T - CD53 3'UTR 0.56 TCGA-CK-5913-01 1 11254637 11254637 G C ANGPTL7 Missense_Mutation p.Q264H 0.18 tolerated(0.54) benign(0) TCGA-CK-5913-01 1 114523959 114523959 C - OLFML3 Frame_Shift_Del p.Y266Tfs*3 0.41 TCGA-CK-5913-01 1 11810259 11810259 C T AGTRAP 3'UTR 0.58 TCGA-CK-5913-01 1 118169265 118169265 A G FAM46C 3'UTR 0.20 TCGA-CK-5913-01 1 1263113 1263113 C T GLTPD1 Silent p.Y205Y 0.44 TCGA-CK-5913-01 1 13936989 13936989 C T PDPN Silent p.N179N 0.16 TCGA-CK-5913-01 1 144923716 144923716 T - PDE4DIP Frame_Shift_Del p.I248Sfs*18 0.11 TCGA-CK-5913-01 1 145560247 145560247 C T ANKRD35 Missense_Mutation p.R245W 0.15 tolerated(0.07) possibly_damaging(0.876) TCGA-CK-5913-01 1 1470752 1470752 G T TMEM240 Missense_Mutation p.P170Q 0.19 tolerated_low_confidence(0.09) probably_damaging(0.998) TCGA-CK-5913-01 1 151824818 151824818 C T THEM5 Missense_Mutation p.G81S 0.16 tolerated(1) benign(0.007) TCGA-CK-5913-01 1 152327912 152327912 C A FLG2 Missense_Mutation p.G784C 0.32 unknown(0) TCGA-CK-5913-01 1 153347074 153347074 C A S100A12 5'UTR 0.38 TCGA-CK-5913-01 1 153905199 153905199 A G DENND4B Silent p.P1226P 0.17 TCGA-CK-5913-01 1 154965582 154965582 A G FLAD1 3'UTR 0.24 TCGA-CK-5913-01 1 155178611 155178611 C - MTX1 Frame_Shift_Del p.R8Afs*110 0.38 TCGA-CK-5913-01 1 155300278 155300278 C A RUSC1 Silent p.T875T 0.35 TCGA-CK-5913-01 1 15546293 15546293 G T TMEM51 3'UTR 0.27 TCGA-CK-5913-01 1 156446896 156446896 G A MEF2D Missense_Mutation p.P255S 0.10 deleterious(0.02) benign(0.063) TCGA-CK-5913-01 1 156513796 156513796 G A IQGAP3 Missense_Mutation p.A836V 0.34 deleterious(0.03) benign(0.077) TCGA-CK-5913-01 1 156926292 156926292 G A ARHGEF11 Nonsense_Mutation p.R531* 0.27 TCGA-CK-5913-01 1 158626432 158626432 C A SPTA1 Missense_Mutation p.K940N 0.27 deleterious(0) probably_damaging(0.954) TCGA-CK-5913-01 1 16053508 16053508 G T PLEKHM2 Splice_Site p.X314_splice 0.14 TCGA-CK-5913-01 1 160850421 160850421 G A ITLN1 Silent p.G214G 0.18 TCGA-CK-5913-01 1 161024259 161024259 G T ARHGAP30 Missense_Mutation p.L145M 0.12 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 1 163043368 163043368 A - RGS4 Frame_Shift_Del p.K210Rfs*15 0.28 TCGA-CK-5913-01 1 166039648 166039648 C A FAM78B Missense_Mutation p.G206W 0.39 deleterious(0) probably_damaging(0.992) TCGA-CK-5913-01 1 169823925 169823925 G T SCYL3 Missense_Mutation p.P552H 0.36 tolerated(0.05) possibly_damaging(0.469) TCGA-CK-5913-01 1 17034501 17034501 C A ESPNP RNA 0.16 TCGA-CK-5913-01 1 171254499 171254499 A G FMO1 Missense_Mutation p.Q472R 0.19 deleterious(0) possibly_damaging(0.828) TCGA-CK-5913-01 1 172356364 172356364 A G DNM3 Missense_Mutation p.Q717R 0.38 tolerated(0.09) benign(0.2) TCGA-CK-5913-01 1 173726160 173726160 A G KLHL20 Missense_Mutation p.Y338C 0.36 deleterious(0) probably_damaging(0.951) TCGA-CK-5913-01 1 17395458 17395458 A G PADI2 3'UTR 0.21 TCGA-CK-5913-01 1 17668827 17668827 G A PADI4 Missense_Mutation p.V289M 0.43 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 1 176918435 176918435 T C ASTN1 Missense_Mutation p.H647R 0.42 tolerated(0.25) benign(0.004) TCGA-CK-5913-01 1 177245347 177245347 G A BRINP2 Silent p.L263L 0.39 TCGA-CK-5913-01 1 180257411 180257411 C T ACBD6 3'UTR 0.36 TCGA-CK-5913-01 1 180775273 180775273 T A XPR1 Missense_Mutation p.W175R 0.09 deleterious(0) possibly_damaging(0.706) TCGA-CK-5913-01 1 183520303 183520303 C T SMG7 Missense_Mutation p.A1097V 0.32 deleterious_low_confidence(0.01) benign(0.2) TCGA-CK-5913-01 1 185125734 185125734 C T TRMT1L Silent p.P37P 0.49 TCGA-CK-5913-01 1 18811682 18811682 G - KLHDC7A 3'UTR 0.30 TCGA-CK-5913-01 1 19181313 19181313 G A TAS1R2 Silent p.R217R 0.38 TCGA-CK-5913-01 1 19480330 19480330 G A UBR4 Silent p.L2188L 0.09 TCGA-CK-5913-01 1 196646642 196646643 - A CFH Frame_Shift_Ins p.I157Nfs*4 0.28 TCGA-CK-5913-01 1 197021804 197021804 G A F13B Silent p.C505C 0.32 TCGA-CK-5913-01 1 197403977 197403977 A T CRB1 Missense_Mutation p.E995V 0.29 deleterious(0) probably_damaging(0.958) TCGA-CK-5913-01 1 197446983 197446983 C - CRB1 Frame_Shift_Del p.P1400Lfs*6 0.40 TCGA-CK-5913-01 1 197887000 197887000 G A LHX9 Missense_Mutation p.R16H 0.23 tolerated_low_confidence(0.6) benign(0.001) TCGA-CK-5913-01 1 198608383 198608383 C T PTPRC 5'UTR 0.32 TCGA-CK-5913-01 1 200008787 200008787 T C NR5A2 Silent p.G22G 0.21 TCGA-CK-5913-01 1 200943295 200943295 G A KIF21B Silent p.Y1614Y 0.29 TCGA-CK-5913-01 1 201438267 201438267 G A PHLDA3 5'UTR 0.38 TCGA-CK-5913-01 1 203030783 203030783 A C PPFIA4 Missense_Mutation p.S445R 0.34 tolerated(0.08) benign(0.439) TCGA-CK-5913-01 1 205308365 205308365 C T KLHDC8A Silent p.Q238Q 0.33 TCGA-CK-5913-01 1 207273266 207273268 TTG - C4BPB In_Frame_Del p.L252del 0.38 TCGA-CK-5913-01 1 21074131 21074131 T - HP1BP3 Frame_Shift_Del p.T387Pfs*86 0.31 TCGA-CK-5913-01 1 21299497 21299497 T - EIF4G3 Frame_Shift_Del p.T148Lfs*2 0.24 TCGA-CK-5913-01 1 214557491 214557491 G T PTPN14 Silent p.P569P 0.26 TCGA-CK-5913-01 1 21551813 21551813 T C ECE1 Missense_Mutation p.E657G 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CK-5913-01 1 220253133 220253133 G A BPNT1 Missense_Mutation p.A19V 0.09 deleterious(0.04) possibly_damaging(0.5) TCGA-CK-5913-01 1 220375682 220375682 T C RAB3GAP2 Silent p.P249P 0.27 TCGA-CK-5913-01 1 22198701 22198701 G A HSPG2 Missense_Mutation p.P1400L 0.42 probably_damaging(0.999) TCGA-CK-5913-01 1 224581669 224581669 C T WDR26 Silent p.A607A 0.20 TCGA-CK-5913-01 1 224804709 224804709 G A CNIH3 5'UTR 0.39 TCGA-CK-5913-01 1 227834344 227834344 G A ZNF678 5'UTR 0.36 TCGA-CK-5913-01 1 228399737 228399737 C T OBSCN Missense_Mutation p.R85C 0.54 probably_damaging(0.988) TCGA-CK-5913-01 1 236720575 236720575 T C HEATR1 Missense_Mutation p.S1759G 0.34 deleterious(0) probably_damaging(0.991) TCGA-CK-5913-01 1 237758819 237758819 T C RYR2 Silent p.Y1486Y 0.42 TCGA-CK-5913-01 1 23857179 23857180 - G E2F2 Frame_Shift_Ins p.Q36Pfs*66 0.51 TCGA-CK-5913-01 1 246940273 246940273 T A RP11-439E19.10 3'Flank 0.34 TCGA-CK-5913-01 1 247769382 247769382 A T OR2G3 Missense_Mutation p.Q165H 0.40 tolerated(0.25) benign(0.114) TCGA-CK-5913-01 1 248458186 248458186 C T OR2T12 Missense_Mutation p.R232H 0.10 tolerated(0.06) benign(0.117) TCGA-CK-5913-01 1 25167313 25167313 G A CLIC4 Missense_Mutation p.G216D 0.38 deleterious(0) benign(0.125) TCGA-CK-5913-01 1 25573036 25573036 T C C1orf63 Missense_Mutation p.Y140C 0.08 deleterious(0) probably_damaging(0.997) TCGA-CK-5913-01 1 27057853 27057853 C T ARID1A Nonsense_Mutation p.Q521* 0.37 TCGA-CK-5913-01 1 29069182 29069183 - G YTHDF2 Frame_Shift_Ins p.N136Kfs*2 0.25 TCGA-CK-5913-01 1 29070190 29070190 G A YTHDF2 Missense_Mutation p.V470M 0.21 tolerated(0.47) possibly_damaging(0.852) TCGA-CK-5913-01 1 32198581 32198581 G A BAI2 Missense_Mutation p.R1206C 0.46 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 1 3624256 3624256 G A TP73 Silent p.S110S 0.34 TCGA-CK-5913-01 1 36645310 36645310 G T MAP7D1 Missense_Mutation p.K758N 0.20 unknown(0) TCGA-CK-5913-01 1 36935323 36935323 G - CSF3R Frame_Shift_Del p.S469Afs*22 0.39 TCGA-CK-5913-01 1 38274674 38274674 C - C1orf122 Frame_Shift_Del p.Q90Sfs*42 0.38 TCGA-CK-5913-01 1 39341761 39341761 A G GJA9 Missense_Mutation p.W4R 0.33 deleterious(0.03) benign(0.29) TCGA-CK-5913-01 1 40036956 40036956 G A PABPC4 Silent p.A151A 0.36 TCGA-CK-5913-01 1 40219047 40219047 C - PPIE Intron 0.45 TCGA-CK-5913-01 1 43162382 43162382 C T YBX1 Missense_Mutation p.R142C 0.26 tolerated(0.11) benign(0.232) TCGA-CK-5913-01 1 43914151 43914151 A G SZT2 Missense_Mutation p.Q3265R 0.30 tolerated(0.42) probably_damaging(0.99) TCGA-CK-5913-01 1 44395843 44395843 C T ST3GAL3 Missense_Mutation p.R429W 0.44 deleterious(0.01) possibly_damaging(0.888) TCGA-CK-5913-01 1 44395864 44395864 G A ST3GAL3 Missense_Mutation p.V436I 0.32 tolerated(0.12) benign(0.41) TCGA-CK-5913-01 1 44415549 44415549 T C IPO13 Missense_Mutation p.L182P 0.14 deleterious(0) probably_damaging(0.989) TCGA-CK-5913-01 1 44461665 44461665 G A CCDC24 Missense_Mutation p.G253R 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 1 51827022 51827022 T - EPS15 Frame_Shift_Del p.R789Dfs*14 0.25 TCGA-CK-5913-01 1 52889538 52889538 A G ZCCHC11 3'UTR 0.19 TCGA-CK-5913-01 1 53068137 53068137 C T GPX7 Missense_Mutation p.A19V 0.50 tolerated(0.28) unknown(0) TCGA-CK-5913-01 1 53370363 53370363 G A ECHDC2 Silent p.A219A 0.39 TCGA-CK-5913-01 1 54606921 54606921 C - CDCP2 Frame_Shift_Del p.V205Cfs*106 0.30 TCGA-CK-5913-01 1 55603344 55603344 A G USP24 Silent p.D1015D 0.17 TCGA-CK-5913-01 1 61869759 61869759 G A NFIA Intron 0.46 TCGA-CK-5913-01 1 62582282 62582282 T C INADL Silent p.D1578D 0.18 TCGA-CK-5913-01 1 65851461 65851461 A G DNAJC6 Silent p.T289T 0.37 TCGA-CK-5913-01 1 66827436 66827436 G A PDE4B Missense_Mutation p.R327H 0.13 deleterious(0) possibly_damaging(0.823) TCGA-CK-5913-01 1 74930443 74930443 T C FPGT-TNNI3K Intron 0.38 TCGA-CK-5913-01 1 75037529 75037529 C T C1orf173 Missense_Mutation p.A1289T 0.43 tolerated(0.1) benign(0.004) TCGA-CK-5913-01 1 8074071 8074071 A G ERRFI1 Silent p.P196P 0.21 TCGA-CK-5913-01 1 86894167 86894167 G T CLCA2 Missense_Mutation p.G131W 0.07 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 1 89206848 89206848 A - PKN2 Frame_Shift_Del p.S78Vfs*5 0.12 TCGA-CK-5913-01 1 91403915 91403915 A G ZNF644 Missense_Mutation p.V999A 0.13 tolerated(0.12) probably_damaging(0.992) TCGA-CK-5913-01 1 914508 914508 C T C1orf170 Silent p.P540P 0.42 TCGA-CK-5913-01 1 91816307 91816307 G T HFM1 Missense_Mutation p.P732T 0.32 deleterious(0) probably_damaging(0.996) TCGA-CK-5913-01 1 94312396 94312397 - C BCAR3 Intron 0.38 TCGA-CK-5913-01 1 97770929 97770929 C T DPYD Missense_Mutation p.A729T 0.33 deleterious(0.01) probably_damaging(0.97) TCGA-CK-5913-01 20 16360306 16360306 G A KIF16B Missense_Mutation p.R781C 0.35 tolerated(0.07) benign(0.013) TCGA-CK-5913-01 20 16712372 16712372 A T SNRPB2 Missense_Mutation p.I9F 0.34 deleterious(0) possibly_damaging(0.714) TCGA-CK-5913-01 20 23016561 23016561 C T SSTR4 Silent p.A147A 0.26 TCGA-CK-5913-01 20 2398109 2398109 G A TGM6 Missense_Mutation p.R523Q 0.27 tolerated(0.66) benign(0.015) TCGA-CK-5913-01 20 24990019 24990019 A G ACSS1 Missense_Mutation p.F593L 0.14 tolerated(0.06) benign(0.009) TCGA-CK-5913-01 20 25028721 25028721 C A ACSS1 Missense_Mutation p.R144M 0.49 deleterious(0.01) probably_damaging(0.928) TCGA-CK-5913-01 20 26061927 26061927 G A FAM182A RNA 0.47 TCGA-CK-5913-01 20 30381659 30381659 C T TPX2 Silent p.D506D 0.12 TCGA-CK-5913-01 20 30432378 30432378 G A FOXS1 Missense_Mutation p.T323M 0.40 deleterious(0) probably_damaging(0.996) TCGA-CK-5913-01 20 30436212 30436212 G A FOXS1 5'Flank 0.40 TCGA-CK-5913-01 20 31625456 31625456 C T BPIFB6 Missense_Mutation p.S253L 0.38 deleterious(0) probably_damaging(0.934) TCGA-CK-5913-01 20 31811740 31811740 G T BPIFA3 Missense_Mutation p.R84M 0.33 tolerated(1) benign(0.009) TCGA-CK-5913-01 20 3212166 3212166 G A SLC4A11 Missense_Mutation p.A296V 0.42 deleterious(0) benign(0.378) TCGA-CK-5913-01 20 334211 334211 T C NRSN2 Missense_Mutation p.F183L 0.27 tolerated(0.51) benign(0.003) TCGA-CK-5913-01 20 34086523 34086523 T C CEP250 Missense_Mutation p.L1252P 0.33 probably_damaging(0.979) TCGA-CK-5913-01 20 3686511 3686511 C T SIGLEC1 Missense_Mutation p.V196I 0.37 tolerated(0.68) benign(0.08) TCGA-CK-5913-01 20 36997697 36997697 C T LBP Missense_Mutation p.P347L 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-CK-5913-01 20 37159852 37159852 C A RALGAPB Missense_Mutation p.A698D 0.31 tolerated(0.35) benign(0.28) TCGA-CK-5913-01 20 3804835 3804835 G A AP5S1 Missense_Mutation p.R165H 0.43 tolerated(0.11) benign(0.007) TCGA-CK-5913-01 20 39990228 39990228 G A EMILIN3 Missense_Mutation p.L661F 0.31 deleterious(0.04) benign(0.332) TCGA-CK-5913-01 20 41100936 41100936 C T PTPRT Missense_Mutation p.E474K 0.26 tolerated(0.71) benign(0.335) TCGA-CK-5913-01 20 42302447 42302447 G A MYBL2 Missense_Mutation p.E8K 0.13 deleterious(0) possibly_damaging(0.558) TCGA-CK-5913-01 20 43379203 43379203 C A KCNK15 Silent p.L239L 0.35 TCGA-CK-5913-01 20 44505803 44505803 G A ZSWIM3 Silent p.R202R 0.38 TCGA-CK-5913-01 20 44580825 44580825 G A ZNF335 Silent p.P1050P 0.32 TCGA-CK-5913-01 20 55746142 55746142 G A BMP7 Missense_Mutation p.T390M 0.16 tolerated(0.19) probably_damaging(0.96) TCGA-CK-5913-01 20 58569513 58569513 G A CDH26 Silent p.A545A 0.40 TCGA-CK-5913-01 20 60585123 60585123 G A TAF4 Silent p.T580T 0.38 TCGA-CK-5913-01 20 60868876 60868876 C - OSBPL2 Frame_Shift_Del p.D461Tfs*44 0.34 TCGA-CK-5913-01 20 60883816 60883817 - AGCC ADRM1 Frame_Shift_Ins 0.23 TCGA-CK-5913-01 20 60993480 60993480 G A RBBP8NL Missense_Mutation p.R35W 0.40 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 20 61488984 61488984 G A TCFL5 Missense_Mutation p.A334V 0.05 tolerated(0.08) benign(0.041) TCGA-CK-5913-01 20 61510857 61510857 G A DIDO1 Missense_Mutation p.R2151W 0.27 benign(0.01) TCGA-CK-5913-01 20 61991030 61991030 C T CHRNA4 Missense_Mutation p.R33Q 0.26 tolerated(0.18) benign(0.012) TCGA-CK-5913-01 20 62038264 62038264 G A KCNQ2 Silent p.S784S 0.33 TCGA-CK-5913-01 20 62163909 62163909 C T PTK6 Missense_Mutation p.A268T 0.31 tolerated(0.26) benign(0.257) TCGA-CK-5913-01 20 62594547 62594547 G A ZNF512B Silent p.C623C 0.27 TCGA-CK-5913-01 21 10908835 10908835 C T TPTE Missense_Mutation p.E504K 0.14 tolerated(0.47) benign(0.034) TCGA-CK-5913-01 21 15746283 15746283 A T HSPA13 Missense_Mutation p.S357R 0.36 tolerated(0.51) benign(0.001) TCGA-CK-5913-01 21 16340722 16340722 C T NRIP1 5'UTR 0.35 TCGA-CK-5913-01 21 17911455 17911455 G A MIR99A RNA 0.41 TCGA-CK-5913-01 21 28214913 28214913 G A ADAMTS1 Silent p.H274H 0.40 TCGA-CK-5913-01 21 32493037 32493037 G A TIAM1 Silent p.P1475P 0.39 TCGA-CK-5913-01 21 33041030 33041030 C A SOD1 3'UTR 0.47 TCGA-CK-5913-01 21 34133368 34133368 A G PAXBP1 Splice_Site p.X325_splice 0.11 TCGA-CK-5913-01 21 34400293 34400293 C T OLIG2 3'UTR 0.43 TCGA-CK-5913-01 21 34444465 34444465 C T OLIG1 3'UTR 0.32 TCGA-CK-5913-01 21 34911478 34911478 G A GART Silent p.T48T 0.41 TCGA-CK-5913-01 21 34926745 34926745 G A SON Silent p.P1736P 0.20 TCGA-CK-5913-01 21 41143070 41143070 G A IGSF5 Missense_Mutation p.V216M 0.41 deleterious(0) probably_damaging(0.99) TCGA-CK-5913-01 21 44152210 44152210 C T PDE9A Missense_Mutation p.A158V 0.36 tolerated(0.19) benign(0.016) TCGA-CK-5913-01 21 45876757 45876757 C T LRRC3 Missense_Mutation p.S77F 0.20 deleterious(0.01) possibly_damaging(0.756) TCGA-CK-5913-01 21 46930074 46930074 C A COL18A1 Missense_Mutation p.L1378M 0.20 probably_damaging(0.988) TCGA-CK-5913-01 21 47671606 47671607 - A MCM3AP Intron 0.22 TCGA-CK-5913-01 22 18070863 18070863 G A SLC25A18 Intron 0.37 TCGA-CK-5913-01 22 19029437 19029437 T C DGCR2 Missense_Mutation p.M348V 0.11 deleterious(0.01) possibly_damaging(0.566) TCGA-CK-5913-01 22 19512854 19512854 G T CLDN5 Intron 0.33 TCGA-CK-5913-01 22 19794198 19794198 C T GNB1L Missense_Mutation p.C167Y 0.36 deleterious(0) probably_damaging(0.928) TCGA-CK-5913-01 22 21384332 21384332 G - SLC7A4 Frame_Shift_Del p.L431* 0.39 TCGA-CK-5913-01 22 26110413 26110413 T C ADRBK2 Silent p.P510P 0.08 TCGA-CK-5913-01 22 30125589 30125589 C T CABP7 3'UTR 0.36 TCGA-CK-5913-01 22 30210663 30210664 - G ASCC2 Frame_Shift_Ins p.S235Qfs*2 0.24 TCGA-CK-5913-01 22 31523373 31523373 G A INPP5J Missense_Mutation p.A180T 0.18 tolerated(0.23) benign(0.023) TCGA-CK-5913-01 22 32756594 32756594 G A RFPL3 Silent p.Q243Q 0.31 TCGA-CK-5913-01 22 35802597 35802597 T G MCM5 Missense_Mutation p.S159A 0.31 deleterious(0.02) benign(0.007) TCGA-CK-5913-01 22 38168750 38168750 G A TRIOBP Missense_Mutation p.R2360H 0.14 deleterious_low_confidence(0.04) probably_damaging(0.964) TCGA-CK-5913-01 22 40056439 40056439 G A CACNA1I Missense_Mutation p.G899R 0.41 tolerated(0.07) probably_damaging(0.956) TCGA-CK-5913-01 22 41553327 41553327 A G EP300 Missense_Mutation p.Y1139C 0.12 probably_damaging(0.999) TCGA-CK-5913-01 22 42524867 42524867 G A CYP2D6 Silent p.F195F 0.10 TCGA-CK-5913-01 22 42538561 42538561 G A NDUFA6-AS1 3'Flank 0.21 TCGA-CK-5913-01 22 44285218 44285218 G - PNPLA5 Frame_Shift_Del p.S232Afs*4 0.37 TCGA-CK-5913-01 22 46239753 46239753 C T ATXN10 3'UTR 0.19 TCGA-CK-5913-01 22 46656278 46656278 G A PKDREJ Missense_Mutation p.T981M 0.34 deleterious(0.02) possibly_damaging(0.882) TCGA-CK-5913-01 22 50283696 50283696 A - ZBED4 3'UTR 0.19 TCGA-CK-5913-01 22 50436627 50436627 C T IL17REL Missense_Mutation p.R238H 0.40 tolerated(0.58) possibly_damaging(0.742) TCGA-CK-5913-01 22 50703850 50703850 G A MAPK11 Silent p.H305H 0.45 TCGA-CK-5913-01 22 50988217 50988217 T C KLHDC7B Missense_Mutation p.I541T 0.20 deleterious(0) probably_damaging(0.996) TCGA-CK-5913-01 2 101635498 101635498 T C RPL31 Nonstop_Mutation p.*129Qext*68 0.09 TCGA-CK-5913-01 2 102022484 102022484 G A RFX8 Silent p.A283A 0.36 TCGA-CK-5913-01 2 102472487 102472487 C T MAP4K4 Nonsense_Mutation p.R428* 0.16 TCGA-CK-5913-01 2 107423243 107423243 C T ST6GAL2 Missense_Mutation p.R494H 0.39 probably_damaging(1) TCGA-CK-5913-01 2 113514137 113514137 C A CKAP2L Nonsense_Mutation p.G271* 0.22 TCGA-CK-5913-01 2 113993069 113993069 A - PAX8 Frame_Shift_Del p.L330Wfs*96 0.32 TCGA-CK-5913-01 2 114257251 114257251 C T FOXD4L1 Missense_Mutation p.R140C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 2 120932583 120932583 A - EPB41L5 3'UTR 0.12 TCGA-CK-5913-01 2 125672808 125672808 C T CNTNAP5 3'UTR 0.34 TCGA-CK-5913-01 2 132110631 132110631 G A AC073869.2 RNA 0.36 TCGA-CK-5913-01 2 136481645 136481645 A G R3HDM1 Missense_Mutation p.H1028R 0.35 tolerated(0.34) benign(0.169) TCGA-CK-5913-01 2 138421046 138421046 A - THSD7B Frame_Shift_Del p.A1523Lfs*3 0.26 TCGA-CK-5913-01 2 149542350 149542350 G A EPC2 Missense_Mutation p.A711T 0.36 tolerated(0.29) benign(0.002) TCGA-CK-5913-01 2 15768947 15768947 C T DDX1 Missense_Mutation p.A620V 0.36 deleterious(0.01) possibly_damaging(0.451) TCGA-CK-5913-01 2 159195587 159195587 A G CCDC148 Missense_Mutation p.V166A 0.32 deleterious(0) possibly_damaging(0.728) TCGA-CK-5913-01 2 160035580 160035580 C T TANC1 Nonsense_Mutation p.R806* 0.13 TCGA-CK-5913-01 2 162036191 162036191 C T TANK Silent p.G6G 0.30 TCGA-CK-5913-01 2 164591486 164591486 A C FIGN 5'UTR 0.40 TCGA-CK-5913-01 2 167163067 167163067 G A SCN9A Silent p.C140C 0.33 TCGA-CK-5913-01 2 169788951 169788951 C T ABCB11 Missense_Mutation p.R1050H 0.38 tolerated(0.9) probably_damaging(0.957) TCGA-CK-5913-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.10 TCGA-CK-5913-01 2 176995458 176995458 C - HOXD8 Frame_Shift_Del p.C124Afs*53 0.62 TCGA-CK-5913-01 2 179588185 179588185 G A TTN Silent p.N7214N 0.36 TCGA-CK-5913-01 2 179615307 179615307 T C TTN Intron 0.18 TCGA-CK-5913-01 2 180634263 180634263 C T ZNF385B Missense_Mutation p.A74T 0.36 tolerated(0.33) benign(0.026) TCGA-CK-5913-01 2 182374460 182374460 C T ITGA4 Nonsense_Mutation p.R591* 0.40 TCGA-CK-5913-01 2 186672992 186672992 A - FSIP2 Frame_Shift_Del p.V6411* 0.28 TCGA-CK-5913-01 2 188332558 188332558 G T TFPI Missense_Mutation p.P244T 0.38 deleterious(0.04) possibly_damaging(0.517) TCGA-CK-5913-01 2 198257877 198257877 A G SF3B1 Missense_Mutation p.V1192A 0.07 deleterious(0) possibly_damaging(0.69) TCGA-CK-5913-01 2 205986566 205986566 C T PARD3B Missense_Mutation p.P353L 0.28 deleterious(0) probably_damaging(0.943) TCGA-CK-5913-01 2 210801579 210801580 - T UNC80 Frame_Shift_Ins p.N2032* 0.33 TCGA-CK-5913-01 2 21224672 21224672 T - APOB Frame_Shift_Del p.K4541Sfs*8 0.27 TCGA-CK-5913-01 2 215813451 215813451 G T ABCA12 Missense_Mutation p.H2325N 0.34 tolerated(0.26) benign(0.01) TCGA-CK-5913-01 2 216245555 216245555 G - FN1 Frame_Shift_Del p.L1805* 0.19 TCGA-CK-5913-01 2 216270990 216270990 C T FN1 Missense_Mutation p.S986N 0.09 deleterious(0) probably_damaging(0.997) TCGA-CK-5913-01 2 219893079 219893079 G T CCDC108 Missense_Mutation p.S565R 0.12 deleterious(0.03) possibly_damaging(0.726) TCGA-CK-5913-01 2 220356958 220356958 G A SPEG Missense_Mutation p.R3196Q 0.29 probably_damaging(0.997) TCGA-CK-5913-01 2 220366273 220366273 G A GMPPA Missense_Mutation p.A72T 0.41 tolerated(0.15) benign(0.161) TCGA-CK-5913-01 2 220499282 220499282 T C SLC4A3 Missense_Mutation p.Y595H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 2 231150483 231150483 C T SP140 Silent p.D527D 0.10 TCGA-CK-5913-01 2 233244551 233244551 C T ALPP Missense_Mutation p.R188C 0.38 deleterious(0) probably_damaging(0.95) TCGA-CK-5913-01 2 237246886 237246886 A T IQCA1 Missense_Mutation p.I699N 0.32 deleterious(0) probably_damaging(0.934) TCGA-CK-5913-01 2 238820292 238820292 C A RAMP1 Missense_Mutation p.P105H 0.35 deleterious(0) probably_damaging(0.989) TCGA-CK-5913-01 2 240056068 240056068 G - HDAC4 Frame_Shift_Del p.G390Afs*8 0.43 TCGA-CK-5913-01 2 240954221 240954221 G - NDUFA10 Frame_Shift_Del p.H202Tfs*3 0.27 TCGA-CK-5913-01 2 242012790 242012790 A G SNED1 Intron 0.14 TCGA-CK-5913-01 2 242149781 242149781 G A ANO7 Silent p.R531R 0.20 TCGA-CK-5913-01 2 242194885 242194885 G A HDLBP Silent p.S328S 0.34 TCGA-CK-5913-01 2 26410358 26410359 - C GAREML Frame_Shift_Ins p.Q621Pfs*72 0.32 TCGA-CK-5913-01 2 26676345 26676345 C - DRC1 Frame_Shift_Del p.W618Gfs*19 0.27 TCGA-CK-5913-01 2 27167654 27167654 G A DPYSL5 Missense_Mutation p.G524D 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5913-01 2 27455375 27455376 AG - CAD Frame_Shift_Del p.Q902Hfs*2 0.46 TCGA-CK-5913-01 2 39088665 39088665 T - DHX57 Frame_Shift_Del p.N296Mfs*39 0.33 TCGA-CK-5913-01 2 46583908 46583908 G A EPAS1 Missense_Mutation p.D139N 0.37 deleterious(0) probably_damaging(0.983) TCGA-CK-5913-01 2 46988713 46988713 T - SOCS5 3'UTR 0.28 TCGA-CK-5913-01 2 55074681 55074681 C T EML6 Missense_Mutation p.R370C 0.37 deleterious(0) benign(0.313) TCGA-CK-5913-01 2 55185046 55185046 G A EML6 Missense_Mutation p.A1536T 0.31 tolerated(0.16) benign(0.21) TCGA-CK-5913-01 2 62901050 62901050 G A EHBP1 5'UTR 0.12 TCGA-CK-5913-01 2 68546442 68546442 G A CNRIP1 Missense_Mutation p.R31C 0.40 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 2 68692131 68692131 C T FBXO48 Silent p.Q49Q 0.39 TCGA-CK-5913-01 2 69002261 69002262 - C ARHGAP25 Intron 0.17 TCGA-CK-5913-01 2 71187121 71187121 G T ATP6V1B1 Silent p.T166T 0.36 TCGA-CK-5913-01 2 73496007 73496007 G A FBXO41 Missense_Mutation p.A251V 0.32 tolerated(0.06) possibly_damaging(0.64) TCGA-CK-5913-01 2 74328341 74328341 G - TET3 Frame_Shift_Del p.A1342Pfs*54 0.41 TCGA-CK-5913-01 2 75196650 75196650 C A POLE4 3'UTR 0.34 TCGA-CK-5913-01 2 85051102 85051102 C T TRABD2A Missense_Mutation p.D388N 0.33 deleterious(0) possibly_damaging(0.827) TCGA-CK-5913-01 2 86067102 86067102 A - ST3GAL5 3'UTR 0.30 TCGA-CK-5913-01 2 86832415 86832415 A - RNF103 Frame_Shift_Del p.F203Lfs*4 0.12 TCGA-CK-5913-01 2 98274730 98274730 G A ACTR1B Missense_Mutation p.T236M 0.33 tolerated(0.06) benign(0.067) TCGA-CK-5913-01 2 99172237 99172237 G A INPP4A Missense_Mutation p.M601I 0.24 tolerated(0.21) benign(0) TCGA-CK-5913-01 2 99413986 99413986 G A KIAA1211L Missense_Mutation p.P811S 0.21 tolerated(0.12) benign(0.188) TCGA-CK-5913-01 2 99778815 99778815 T C LIPT1 Missense_Mutation p.L132S 0.23 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 3 100148660 100148660 T G LNP1 Missense_Mutation p.D29E 0.36 tolerated(0.29) benign(0.031) TCGA-CK-5913-01 3 10028455 10028455 G A EMC3 5'UTR 0.39 TCGA-CK-5913-01 3 100484746 100484746 T C ABI3BP Missense_Mutation p.K886E 0.17 tolerated(0.14) probably_damaging(0.973) TCGA-CK-5913-01 3 111313424 111313424 G T ZBED2 5'UTR 0.33 TCGA-CK-5913-01 3 112710174 112710174 C T GTPBP8 Missense_Mutation p.R110W 0.38 tolerated(0.17) benign(0.009) TCGA-CK-5913-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.47 TCGA-CK-5913-01 3 120957866 120957866 A G STXBP5L Silent p.P411P 0.38 TCGA-CK-5913-01 3 122404071 122404071 T C PARP14 Missense_Mutation p.V76A 0.20 tolerated(0.53) benign(0.009) TCGA-CK-5913-01 3 122459603 122459603 C A HSPBAP1 Missense_Mutation p.E352D 0.34 tolerated(0.31) benign(0.002) TCGA-CK-5913-01 3 123010117 123010117 C T ADCY5 Missense_Mutation p.R1057Q 0.21 deleterious(0.01) possibly_damaging(0.684) TCGA-CK-5913-01 3 124415065 124415065 C T AC080008.1 3'Flank 0.18 TCGA-CK-5913-01 3 126180753 126180753 G A ZXDC Silent p.L584L 0.35 TCGA-CK-5913-01 3 129270195 129270195 G - H1FOO 3'UTR 0.41 TCGA-CK-5913-01 3 132438662 132438662 T - NPHP3 Frame_Shift_Del p.T136Rfs*13 0.30 TCGA-CK-5913-01 3 133119375 133119375 T C BFSP2 Missense_Mutation p.W150R 0.37 deleterious(0) probably_damaging(0.981) TCGA-CK-5913-01 3 134270808 134270808 G A CEP63 Missense_Mutation p.R474H 0.34 tolerated(0.25) benign(0.011) TCGA-CK-5913-01 3 136573600 136573600 C A SLC35G2 Missense_Mutation p.Q100K 0.36 tolerated(0.21) benign(0.329) TCGA-CK-5913-01 3 138669207 138669207 C T C3orf72 Silent p.S107S 0.53 TCGA-CK-5913-01 3 141162449 141162449 C T ZBTB38 Missense_Mutation p.R407C 0.35 tolerated(0.06) benign(0.001) TCGA-CK-5913-01 3 141164253 141164253 G A ZBTB38 Missense_Mutation p.R1008Q 0.38 tolerated(0.12) benign(0.057) TCGA-CK-5913-01 3 1445129 1445129 T - CNTN6 3'UTR 0.32 TCGA-CK-5913-01 3 148459550 148459550 T C AGTR1 Missense_Mutation p.M243T 0.15 deleterious(0.05) benign(0.016) TCGA-CK-5913-01 3 151150682 151150682 T - MED12L 3'UTR 0.27 TCGA-CK-5913-01 3 155393927 155393927 A - PLCH1 5'Flank 0.23 TCGA-CK-5913-01 3 160395094 160395094 A G ARL14 5'UTR 0.40 TCGA-CK-5913-01 3 172474890 172474890 C A ECT2 Missense_Mutation p.L141I 0.08 tolerated(0.06) probably_damaging(0.997) TCGA-CK-5913-01 3 17279667 17279667 G A TBC1D5 Nonsense_Mutation p.Q526* 0.29 TCGA-CK-5913-01 3 179526205 179526205 T G PEX5L Missense_Mutation p.K458T 0.34 tolerated(0.39) probably_damaging(0.974) TCGA-CK-5913-01 3 184953083 184953083 C T EHHADH Missense_Mutation p.A116T 0.31 tolerated(0.31) benign(0.003) TCGA-CK-5913-01 3 185251461 185251461 C A LIPH Nonsense_Mutation p.G142* 0.39 TCGA-CK-5913-01 3 185823678 185823678 T C ETV5 5'UTR 0.15 TCGA-CK-5913-01 3 191861713 191861713 G T FGF12 3'UTR 0.11 TCGA-CK-5913-01 3 193132419 193132419 G T ATP13A4 Missense_Mutation p.A988E 0.38 tolerated(0.1) benign(0.05) TCGA-CK-5913-01 3 194175077 194175077 C T ATP13A3 Silent p.L225L 0.11 TCGA-CK-5913-01 3 194366951 194366951 G A LSG1 Missense_Mutation p.A522V 0.21 deleterious(0.05) benign(0.158) TCGA-CK-5913-01 3 195243589 195243589 A G PPP1R2 3'UTR 0.18 TCGA-CK-5913-01 3 195490917 195490917 G A MUC4 Silent p.P4681P 0.40 TCGA-CK-5913-01 3 195944765 195944765 G A SLC51A Missense_Mutation p.A31T 0.33 deleterious(0.04) benign(0.322) TCGA-CK-5913-01 3 21552356 21552356 T - ZNF385D Frame_Shift_Del p.T146Qfs*24 0.17 TCGA-CK-5913-01 3 27758754 27758754 G - EOMES Frame_Shift_Del p.P623Lfs*6 0.16 TCGA-CK-5913-01 3 33414638 33414638 A - FBXL2 Frame_Shift_Del p.I117Sfs*16 0.29 TCGA-CK-5913-01 3 3887877 3887877 G A LRRN1 Missense_Mutation p.G518R 0.33 tolerated(0.15) benign(0.302) TCGA-CK-5913-01 3 38991922 38991922 C A SCN11A 5'UTR 0.12 TCGA-CK-5913-01 3 39171768 39171768 G T TTC21A Missense_Mutation p.E753D 0.37 tolerated(0.09) possibly_damaging(0.593) TCGA-CK-5913-01 3 39228090 39228090 C T XIRP1 Silent p.P949P 0.41 TCGA-CK-5913-01 3 42916107 42916107 G A CYP8B1 Missense_Mutation p.T401I 0.36 tolerated(0.47) possibly_damaging(0.526) TCGA-CK-5913-01 3 44283836 44283836 G A TOPAZ1 Silent p.P97P 0.33 TCGA-CK-5913-01 3 44694074 44694074 C T ZNF35 Missense_Mutation p.A73V 0.34 tolerated(0.08) benign(0.296) TCGA-CK-5913-01 3 447414 447414 C T CHL1 3'UTR 0.39 TCGA-CK-5913-01 3 47040812 47040812 G A NBEAL2 Missense_Mutation p.R1184H 0.40 tolerated(0.44) benign(0.012) TCGA-CK-5913-01 3 47165213 47165213 T - SETD2 Frame_Shift_Del p.T305Qfs*35 0.28 TCGA-CK-5913-01 3 48200932 48200932 T A CDC25A Nonsense_Mutation p.R446* 0.28 TCGA-CK-5913-01 3 48610111 48610111 G - COL7A1 Frame_Shift_Del p.P2298Lfs*90 0.19 TCGA-CK-5913-01 3 48680251 48680251 C T CELSR3 Missense_Mutation p.A2825T 0.28 tolerated(0.39) benign(0.226) TCGA-CK-5913-01 3 49699560 49699560 C T BSN Missense_Mutation p.R3428W 0.17 unknown(0) TCGA-CK-5913-01 3 49934243 49934243 C - MST1R Frame_Shift_Del p.G755Vfs*19 0.25 TCGA-CK-5913-01 3 51434505 51434505 C T VPRBP 3'UTR 0.04 TCGA-CK-5913-01 3 52263131 52263131 G A TWF2 Silent p.F323F 0.10 TCGA-CK-5913-01 3 52427417 52427417 C T DNAH1 Silent p.C3514C 0.34 TCGA-CK-5913-01 3 52492815 52492815 C T NISCH Silent p.G105G 0.20 TCGA-CK-5913-01 3 52834577 52834577 C T ITIH3 Silent p.L367L 0.45 TCGA-CK-5913-01 3 52839854 52839854 T C ITIH3 Missense_Mutation p.L635P 0.54 tolerated(0.31) benign(0.005) TCGA-CK-5913-01 3 53699822 53699823 - T CACNA1D Frame_Shift_Ins p.A304Cfs*2 0.23 TCGA-CK-5913-01 3 54952686 54952686 C T LRTM1 Missense_Mutation p.A280T 0.37 tolerated(0.23) benign(0.021) TCGA-CK-5913-01 3 56026194 56026194 G A ERC2 Missense_Mutation p.R716C 0.34 deleterious(0) possibly_damaging(0.901) TCGA-CK-5913-01 3 56600689 56600690 - A CCDC66 Frame_Shift_Ins p.T207Nfs*2 0.28 TCGA-CK-5913-01 3 67049465 67049465 C T KBTBD8 Missense_Mutation p.A26V 0.32 tolerated_low_confidence(0.18) benign(0.006) TCGA-CK-5913-01 3 69928515 69928515 T C MITF Missense_Mutation p.V112A 0.16 deleterious(0) benign(0.106) TCGA-CK-5913-01 3 73024479 73024479 T C GXYLT2 3'UTR 0.11 TCGA-CK-5913-01 3 75787860 75787860 G T ZNF717 Missense_Mutation p.P305H 0.11 tolerated(1) benign(0.001) TCGA-CK-5913-01 3 7721755 7721755 C T GRM7 Missense_Mutation p.T824M 0.35 deleterious(0.02) probably_damaging(0.95) TCGA-CK-5913-01 3 78647946 78647946 C T ROBO1 3'UTR 0.43 TCGA-CK-5913-01 3 89259552 89259552 C A EPHA3 Missense_Mutation p.N232K 0.35 tolerated(0.68) probably_damaging(0.977) TCGA-CK-5913-01 4 100231967 100231967 A G ADH1B Missense_Mutation p.F353S 0.27 deleterious(0) probably_damaging(0.965) TCGA-CK-5913-01 4 104007681 104007681 G T BDH2 Missense_Mutation p.S125Y 0.21 deleterious(0.01) possibly_damaging(0.888) TCGA-CK-5913-01 4 115773915 115773915 T C NDST4 Silent p.L594L 0.11 TCGA-CK-5913-01 4 118005259 118005260 - T TRAM1L1 3'UTR 0.35 TCGA-CK-5913-01 4 126238426 126238426 A G FAT4 Missense_Mutation p.Y287C 0.37 probably_damaging(1) TCGA-CK-5913-01 4 13589336 13589336 T C BOD1L1 Silent p.S2780S 0.04 TCGA-CK-5913-01 4 138442851 138442851 C A PCDH18 Splice_Site p.X914_splice 0.31 TCGA-CK-5913-01 4 140640429 140640429 T - MAML3 3'UTR 0.08 TCGA-CK-5913-01 4 141543590 141543590 G A TBC1D9 Missense_Mutation p.T1187M 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CK-5913-01 4 145640088 145640088 C A HHIP Nonsense_Mutation p.Y580* 0.33 TCGA-CK-5913-01 4 153273739 153273739 T - FBXW7 Intron 0.17 TCGA-CK-5913-01 4 154513664 154513664 C T KIAA0922 Missense_Mutation p.P617L 0.31 tolerated(0.05) possibly_damaging(0.534) TCGA-CK-5913-01 4 156276957 156276957 C T MAP9 Missense_Mutation p.G401R 0.35 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 4 156289642 156289642 A G MAP9 Intron 0.34 TCGA-CK-5913-01 4 156289644 156289644 G A MAP9 Intron 0.34 TCGA-CK-5913-01 4 173269783 173269783 C T GALNTL6 Nonsense_Mutation p.R166* 0.33 TCGA-CK-5913-01 4 183658061 183658061 C G TENM3 Missense_Mutation p.T1023S 0.39 deleterious(0.01) possibly_damaging(0.636) TCGA-CK-5913-01 4 183713841 183713841 C T TENM3 Missense_Mutation p.R2006C 0.17 deleterious(0) possibly_damaging(0.876) TCGA-CK-5913-01 4 185309962 185309962 C T IRF2 Missense_Mutation p.V334I 0.37 deleterious(0) probably_damaging(0.979) TCGA-CK-5913-01 4 187131626 187131626 A - CYP4V2 Frame_Shift_Del p.K471Sfs*4 0.24 TCGA-CK-5913-01 4 2648551 2648551 G A FAM193A Missense_Mutation p.D144N 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-CK-5913-01 4 36309919 36309919 C A DTHD1 Silent p.A508A 0.29 TCGA-CK-5913-01 4 38775896 38775896 C A TLR10 Missense_Mutation p.R439M 0.16 deleterious(0) possibly_damaging(0.786) TCGA-CK-5913-01 4 39297374 39297374 A G RFC1 Silent p.I939I 0.34 TCGA-CK-5913-01 4 40440331 40440331 G T RBM47 Missense_Mutation p.R194S 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 4 46979108 46979108 C T GABRA4 Missense_Mutation p.G183S 0.33 tolerated(0.07) possibly_damaging(0.85) TCGA-CK-5913-01 4 54343101 54343101 G A LNX1 Missense_Mutation p.R571W 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-CK-5913-01 4 5627531 5627531 T - EVC2 Frame_Shift_Del p.K664Rfs*8 0.29 TCGA-CK-5913-01 4 57182506 57182506 G A KIAA1211 Silent p.P946P 0.41 TCGA-CK-5913-01 4 62936040 62936040 A - LPHN3 Frame_Shift_Del p.H1275Lfs*11 0.08 TCGA-CK-5913-01 4 6596373 6596373 C T MAN2B2 Missense_Mutation p.T324M 0.07 deleterious(0) probably_damaging(0.969) TCGA-CK-5913-01 4 70146290 70146290 A G UGT2B28 Silent p.G24G 0.33 TCGA-CK-5913-01 4 74864282 74864282 C A CXCL5 Missense_Mutation p.S6I 0.20 tolerated(0.08) possibly_damaging(0.897) TCGA-CK-5913-01 4 76522337 76522337 T - CDKL2 Frame_Shift_Del p.G369Afs*20 0.27 TCGA-CK-5913-01 4 76871940 76871940 C T SDAD1 Missense_Mutation p.R676Q 0.35 deleterious(0.02) unknown(0) TCGA-CK-5913-01 4 891885 891885 G A GAK Missense_Mutation p.T196M 0.39 deleterious(0) probably_damaging(0.984) TCGA-CK-5913-01 4 9785349 9785349 G C DRD5 3'UTR 0.17 TCGA-CK-5913-01 4 984963 984963 C T SLC26A1 Missense_Mutation p.A177T 0.21 deleterious(0.01) probably_damaging(0.959) TCGA-CK-5913-01 5 10448469 10448469 G T ROPN1L Nonsense_Mutation p.G77* 0.34 TCGA-CK-5913-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.29 TCGA-CK-5913-01 5 112222852 112222852 G - REEP5 Frame_Shift_Del p.P127Rfs*20 0.14 TCGA-CK-5913-01 5 115824656 115824656 C T SEMA6A Missense_Mutation p.A195T 0.37 deleterious(0) probably_damaging(0.982) TCGA-CK-5913-01 5 118877768 118877768 G C HSD17B4 3'UTR 0.19 TCGA-CK-5913-01 5 121413317 121413317 G A LOX Missense_Mutation p.R122C 0.36 deleterious(0.01) possibly_damaging(0.847) TCGA-CK-5913-01 5 122924121 122924121 G A CSNK1G3 Missense_Mutation p.A254T 0.31 deleterious(0.01) benign(0.397) TCGA-CK-5913-01 5 130766997 130766997 T C RAPGEF6 Silent p.S1348S 0.29 TCGA-CK-5913-01 5 130797767 130797767 T - RAPGEF6 Frame_Shift_Del p.N832Ifs*17 0.27 TCGA-CK-5913-01 5 137518669 137518669 C T KIF20A Silent p.S274S 0.38 TCGA-CK-5913-01 5 13766223 13766223 C A DNAH5 Silent p.R3321R 0.44 TCGA-CK-5913-01 5 13841173 13841173 A G DNAH5 Missense_Mutation p.F1851L 0.15 benign(0.153) TCGA-CK-5913-01 5 138658194 138658194 C T MATR3 Nonsense_Mutation p.R593* 0.34 TCGA-CK-5913-01 5 138773208 138773208 T C DNAJC18 Missense_Mutation p.D27G 0.35 tolerated(0.84) benign(0.001) TCGA-CK-5913-01 5 140167982 140167982 G A PCDHA1 Missense_Mutation p.A703T 0.29 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-CK-5913-01 5 140242770 140242770 G A AC005609.1 Missense_Mutation p.T69M 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-CK-5913-01 5 140554029 140554029 C - PCDHB7 Frame_Shift_Del p.A540Rfs*2 0.22 TCGA-CK-5913-01 5 140712478 140712478 G A PCDHGA1 Missense_Mutation p.V743M 0.33 tolerated_low_confidence(0.17) benign(0.085) TCGA-CK-5913-01 5 140720625 140720625 C T PCDHGA2 Missense_Mutation p.A696V 0.33 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-CK-5913-01 5 141242604 141242604 T C PCDH1 Intron 0.53 TCGA-CK-5913-01 5 141336245 141336245 C T PCDH12 Missense_Mutation p.C391Y 0.35 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 5 147862656 147862656 G A HTR4 3'UTR 0.47 TCGA-CK-5913-01 5 148206749 148206749 G A ADRB2 Missense_Mutation p.A119T 0.37 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 5 148725136 148725136 C T GRPEL2 Missense_Mutation p.R12W 0.12 tolerated(0.25) benign(0.001) TCGA-CK-5913-01 5 150921911 150921911 G A FAT2 Missense_Mutation p.A2926V 0.32 benign(0.006) TCGA-CK-5913-01 5 158139201 158139201 T - EBF1 Frame_Shift_Del p.T504Pfs*14 0.09 TCGA-CK-5913-01 5 176314638 176314638 C T HK3 Missense_Mutation p.V472M 0.48 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 5 176793942 176793942 G A RGS14 Silent p.A130A 0.30 TCGA-CK-5913-01 5 176918923 176918923 A G PDLIM7 Missense_Mutation p.S95P 0.37 tolerated(0.27) benign(0.001) TCGA-CK-5913-01 5 176951224 176951224 C T FAM193B Missense_Mutation p.R753Q 0.42 deleterious(0) possibly_damaging(0.726) TCGA-CK-5913-01 5 179132745 179132745 T C CANX Silent p.H21H 0.35 TCGA-CK-5913-01 5 23526621 23526621 C A PRDM9 Missense_Mutation p.A475D 0.34 tolerated(0.13) possibly_damaging(0.793) TCGA-CK-5913-01 5 23527274 23527274 G C PRDM9 Missense_Mutation p.V693L 0.21 tolerated(0.1) probably_damaging(0.986) TCGA-CK-5913-01 5 3599604 3599604 C T IRX1 Missense_Mutation p.A181V 0.32 deleterious(0) probably_damaging(0.984) TCGA-CK-5913-01 5 36052042 36052042 C A UGT3A2 Missense_Mutation p.A81S 0.39 tolerated(0.59) benign(0.006) TCGA-CK-5913-01 5 37333609 37333609 G A NUP155 Nonsense_Mutation p.Q492* 0.35 TCGA-CK-5913-01 5 434622 434622 C T AHRR Silent p.H611H 0.25 TCGA-CK-5913-01 5 50689344 50689344 G A ISL1 Missense_Mutation p.G317E 0.30 tolerated(0.18) benign(0.024) TCGA-CK-5913-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.30 TCGA-CK-5913-01 5 67592075 67592075 C T PIK3R1 Nonsense_Mutation p.R631* 0.34 TCGA-CK-5913-01 5 71494450 71494450 C A MAP1B Silent p.P1756P 0.36 TCGA-CK-5913-01 5 75960958 75960958 A - IQGAP2 Frame_Shift_Del p.T881Hfs*2 0.28 TCGA-CK-5913-01 5 79031937 79031937 C A CMYA5 Missense_Mutation p.S2450Y 0.09 possibly_damaging(0.895) TCGA-CK-5913-01 5 90059178 90059178 G T GPR98 Silent p.T4059T 0.41 TCGA-CK-5913-01 6 105607673 105607673 G A POPDC3 Silent p.G169G 0.30 TCGA-CK-5913-01 6 108508525 108508525 G A NR2E1 Missense_Mutation p.R339H 0.33 deleterious(0) probably_damaging(0.995) TCGA-CK-5913-01 6 109850211 109850211 T C AK9 Intron 0.30 TCGA-CK-5913-01 6 110300640 110300640 G A GPR6 Missense_Mutation p.V109M 0.46 deleterious(0.03) probably_damaging(0.997) TCGA-CK-5913-01 6 110746167 110746167 C A SLC22A16 Missense_Mutation p.S548I 0.33 tolerated(0.17) benign(0.048) TCGA-CK-5913-01 6 111289029 111289029 T C GTF3C6 3'UTR 0.16 TCGA-CK-5913-01 6 111329254 111329254 C A RPF2 Missense_Mutation p.P136H 0.08 deleterious(0.04) probably_damaging(0.93) TCGA-CK-5913-01 6 111409135 111409136 - C SLC16A10 Frame_Shift_Ins p.E63Rfs*46 0.18 TCGA-CK-5913-01 6 111650927 111650927 T - REV3L Frame_Shift_Del p.G2684Vfs*11 0.28 TCGA-CK-5913-01 6 111696474 111696474 G A REV3L Silent p.P1028P 0.29 TCGA-CK-5913-01 6 112486396 112486396 C T LAMA4 Missense_Mutation p.R545H 0.37 tolerated(0.24) benign(0.009) TCGA-CK-5913-01 6 112671577 112671577 G A RFPL4B Missense_Mutation p.V223I 0.29 tolerated(0.11) possibly_damaging(0.647) TCGA-CK-5913-01 6 119232909 119232909 C A MCM9 Silent p.G352G 0.34 TCGA-CK-5913-01 6 128302266 128302266 T C PTPRK Missense_Mutation p.M1242V 0.16 tolerated(0.18) benign(0.003) TCGA-CK-5913-01 6 13206135 13206135 G - PHACTR1 Frame_Shift_Del p.P254Qfs*59 0.48 TCGA-CK-5913-01 6 133094118 133094118 T C SLC18B1 Intron 0.40 TCGA-CK-5913-01 6 137243994 137243994 C G SLC35D3 Missense_Mutation p.A143G 0.50 deleterious(0.03) possibly_damaging(0.698) TCGA-CK-5913-01 6 137466702 137466702 T C IL22RA2 3'UTR 0.07 TCGA-CK-5913-01 6 137815476 137815476 G A OLIG3 5'UTR 0.24 TCGA-CK-5913-01 6 143091148 143091148 C T HIVEP2 Silent p.S1576S 0.38 TCGA-CK-5913-01 6 144808752 144808752 G A UTRN Silent p.L1297L 0.36 TCGA-CK-5913-01 6 146720630 146720630 G T GRM1 Missense_Mutation p.V819L 0.38 deleterious(0.01) probably_damaging(0.93) TCGA-CK-5913-01 6 147012390 147012391 - A ADGB Frame_Shift_Ins p.E487Gfs*7 0.29 TCGA-CK-5913-01 6 151277159 151277159 A - MTHFD1L Frame_Shift_Del p.I587* 0.14 TCGA-CK-5913-01 6 154360507 154360507 A G OPRM1 Intron 0.43 TCGA-CK-5913-01 6 15496485 15496485 G A JARID2 Silent p.T343T 0.18 TCGA-CK-5913-01 6 155154368 155154368 A G SCAF8 Missense_Mutation p.T1219A 0.18 tolerated_low_confidence(0.09) benign(0.036) TCGA-CK-5913-01 6 155579134 155579134 G A TFB1M Missense_Mutation p.R293C 0.37 tolerated(0.19) benign(0) TCGA-CK-5913-01 6 157517445 157517445 C T ARID1B Nonsense_Mutation p.R1337* 0.38 TCGA-CK-5913-01 6 159657308 159657308 T C FNDC1 Silent p.N1343N 0.17 TCGA-CK-5913-01 6 160978526 160978526 C T LPA Missense_Mutation p.R1570K 0.37 tolerated(0.18) benign(0.088) TCGA-CK-5913-01 6 163986869 163986869 G A QKI Intron 0.32 TCGA-CK-5913-01 6 165715152 165715152 C T C6orf118 Missense_Mutation p.R220H 0.36 tolerated(0.41) benign(0.006) TCGA-CK-5913-01 6 165715762 165715762 C T C6orf118 Missense_Mutation p.E17K 0.36 deleterious_low_confidence(0.03) unknown(0) TCGA-CK-5913-01 6 167571070 167571070 G A GPR31 Missense_Mutation p.R84C 0.35 tolerated(0.19) benign(0.195) TCGA-CK-5913-01 6 170059262 170059262 G A WDR27 Silent p.A413A 0.43 TCGA-CK-5913-01 6 17837308 17837308 C - KIF13A Frame_Shift_Del p.G319Afs*7 0.32 TCGA-CK-5913-01 6 26508731 26508731 G A BTN1A1 Missense_Mutation p.D304N 0.36 tolerated(0.07) benign(0.037) TCGA-CK-5913-01 6 28297163 28297163 G A ZSCAN31 Missense_Mutation p.R100W 0.37 deleterious(0) possibly_damaging(0.767) TCGA-CK-5913-01 6 28554433 28554434 - C SCAND3 Frame_Shift_Ins p.E21Gfs*8 0.25 TCGA-CK-5913-01 6 29079702 29079703 - G OR2J3 Frame_Shift_Ins p.Y14Vfs*9 0.19 TCGA-CK-5913-01 6 29577143 29577144 - G GABBR1 Frame_Shift_Ins p.A575Sfs*2 0.27 TCGA-CK-5913-01 6 31105780 31105780 T C PSORS1C2 Missense_Mutation p.N120S 0.32 deleterious_low_confidence(0.03) benign(0) TCGA-CK-5913-01 6 31127063 31127063 C A TCF19 5'UTR 0.54 TCGA-CK-5913-01 6 31765430 31765430 A - LSM2 3'UTR 0.36 TCGA-CK-5913-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.33 TCGA-CK-5913-01 6 32160370 32160370 G A GPSM3 5'UTR 0.42 TCGA-CK-5913-01 6 32163246 32163246 G A NOTCH4 Missense_Mutation p.P1994S 0.43 tolerated_low_confidence(0.1) benign(0.02) TCGA-CK-5913-01 6 33289568 33289568 A G DAXX Silent p.H45H 0.27 TCGA-CK-5913-01 6 40359943 40359943 C T LRFN2 Silent p.A703A 0.36 TCGA-CK-5913-01 6 43152355 43152355 G T CUL9 Missense_Mutation p.D103Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 6 43403623 43403623 C - ABCC10 Frame_Shift_Del p.Q583Rfs*41 0.30 TCGA-CK-5913-01 6 44102308 44102308 C T TMEM63B 5'UTR 0.28 TCGA-CK-5913-01 6 44116119 44116119 C T TMEM63B Missense_Mutation p.A373V 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-CK-5913-01 6 47221138 47221138 C T TNFRSF21 Missense_Mutation p.D455N 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CK-5913-01 6 56999621 56999621 A - ZNF451 Frame_Shift_Del p.K220Nfs*85 0.24 TCGA-CK-5913-01 6 64487930 64487930 C A EYS Missense_Mutation p.G2623W 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 6 69759213 69759213 T G BAI3 Missense_Mutation p.L770V 0.31 deleterious(0.04) probably_damaging(0.965) TCGA-CK-5913-01 6 70423547 70423547 C T LMBRD1 Missense_Mutation p.R302H 0.34 deleterious(0) probably_damaging(0.995) TCGA-CK-5913-01 6 72892067 72892067 C T RIMS1 Missense_Mutation p.A298V 0.25 tolerated(0.43) benign(0.001) TCGA-CK-5913-01 6 7580013 7580013 A G DSP Missense_Mutation p.N1197S 0.32 benign(0.111) TCGA-CK-5913-01 6 82941501 82941501 G T IBTK Missense_Mutation p.S159R 0.23 tolerated(0.16) benign(0.209) TCGA-CK-5913-01 6 90425449 90425449 G A MDN1 Silent p.P2261P 0.39 TCGA-CK-5913-01 6 91226287 91226287 T C MAP3K7 Missense_Mutation p.Y585C 0.33 tolerated(0.27) benign(0.006) TCGA-CK-5913-01 6 96654644 96654644 T - FUT9 3'UTR 0.40 TCGA-CK-5913-01 6 99283608 99283608 A G POU3F2 Missense_Mutation p.T287A 0.27 deleterious(0) probably_damaging(0.991) TCGA-CK-5913-01 6 99284028 99284028 G - POU3F2 Frame_Shift_Del p.S429Vfs*60 0.31 TCGA-CK-5913-01 7 100082904 100082904 G C NYAP1 5'UTR 0.33 TCGA-CK-5913-01 7 100366291 100366291 C T ZAN Silent p.G1700G 0.33 TCGA-CK-5913-01 7 100465567 100465567 G T TRIP6 Missense_Mutation p.G65V 0.46 tolerated(0.2) possibly_damaging(0.642) TCGA-CK-5913-01 7 101256990 101256990 G A MYL10 Silent p.V178V 0.25 TCGA-CK-5913-01 7 101845322 101845322 G A CUX1 Silent p.P926P 0.24 TCGA-CK-5913-01 7 102473370 102473370 A G FBXL13 Missense_Mutation p.S591P 0.13 tolerated(0.6) benign(0.001) TCGA-CK-5913-01 7 111970203 111970203 A - ZNF277 Frame_Shift_Del p.K246Nfs*87 0.12 TCGA-CK-5913-01 7 117417589 117417589 G A CTTNBP2 Silent p.H918H 0.37 TCGA-CK-5913-01 7 121944434 121944434 C A FEZF1 Missense_Mutation p.G20C 0.30 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-CK-5913-01 7 127229186 127229186 G - ARF5 Frame_Shift_Del p.E41Rfs*9 0.41 TCGA-CK-5913-01 7 127343234 127343234 C T SND1 Missense_Mutation p.R233W 0.31 tolerated(0.18) probably_damaging(0.959) TCGA-CK-5913-01 7 128388668 128388668 T A CALU Missense_Mutation p.S19T 0.36 tolerated(0.7) benign(0.028) TCGA-CK-5913-01 7 129856084 129856084 A G SSMEM1 Missense_Mutation p.H170R 0.16 tolerated(0.84) benign(0.402) TCGA-CK-5913-01 7 134613558 134613558 G A CALD1 Missense_Mutation p.R42H 0.35 deleterious(0) unknown(0) TCGA-CK-5913-01 7 136700373 136700373 G A CHRM2 Missense_Mutation p.G254D 0.31 tolerated(0.54) benign(0.004) TCGA-CK-5913-01 7 136701035 136701035 A T CHRM2 3'UTR 0.35 TCGA-CK-5913-01 7 137308276 137308276 G T DGKI Missense_Mutation p.H277N 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-CK-5913-01 7 138603107 138603107 G A KIAA1549 Missense_Mutation p.A422V 0.18 tolerated(0.62) benign(0.002) TCGA-CK-5913-01 7 138603325 138603325 G A KIAA1549 Silent p.H349H 0.40 TCGA-CK-5913-01 7 138732239 138732239 T C ZC3HAV1 3'UTR 0.30 TCGA-CK-5913-01 7 141478330 141478330 T C TAS2R4 Silent p.V14V 0.18 TCGA-CK-5913-01 7 141629893 141629893 G T CLEC5A 3'UTR 0.36 TCGA-CK-5913-01 7 142626640 142626640 C T TRPV5 Missense_Mutation p.A124T 0.32 deleterious(0) probably_damaging(0.942) TCGA-CK-5913-01 7 143079452 143079452 C T ZYX Missense_Mutation p.A107V 0.26 deleterious(0.04) unknown(0) TCGA-CK-5913-01 7 148921630 148921630 G T ZNF282 Missense_Mutation p.G636V 0.27 deleterious(0.01) benign(0.173) TCGA-CK-5913-01 7 149255869 149255869 G A ZNF767 RNA 0.08 TCGA-CK-5913-01 7 150325435 150325435 C T GIMAP6 Missense_Mutation p.R84Q 0.36 deleterious(0) probably_damaging(0.982) TCGA-CK-5913-01 7 150493686 150493686 A G TMEM176B Intron 0.22 TCGA-CK-5913-01 7 150763968 150763968 G A SLC4A2 Missense_Mutation p.R285Q 0.46 deleterious(0.04) probably_damaging(0.998) TCGA-CK-5913-01 7 154863213 154863213 G A HTR5A Missense_Mutation p.V202M 0.33 deleterious(0) probably_damaging(0.963) TCGA-CK-5913-01 7 1589819 1589819 G A TMEM184A Silent p.Y164Y 0.38 TCGA-CK-5913-01 7 1785574 1785574 G T ELFN1 Nonsense_Mutation p.E448* 0.42 TCGA-CK-5913-01 7 22768331 22768331 T C IL6 Missense_Mutation p.M77T 0.40 tolerated(0.27) benign(0.031) TCGA-CK-5913-01 7 26224928 26224928 G A NFE2L3 Missense_Mutation p.R537H 0.17 deleterious(0.05) possibly_damaging(0.847) TCGA-CK-5913-01 7 26225275 26225276 - A NFE2L3 Frame_Shift_Ins p.G654Rfs*2 0.16 TCGA-CK-5913-01 7 37889877 37889878 - A NME8 Frame_Shift_Ins p.R6Tfs*11 0.32 TCGA-CK-5913-01 7 39726328 39726328 G C RALA Missense_Mutation p.G21A 0.33 deleterious(0.01) probably_damaging(1) TCGA-CK-5913-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.60 TCGA-CK-5913-01 7 45122842 45122842 A G NACAD Silent p.P979P 0.33 TCGA-CK-5913-01 7 55218988 55218988 C T EGFR Silent p.C187C 0.37 TCGA-CK-5913-01 7 56149626 56149626 G A PHKG1 Missense_Mutation p.S283L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 7 6026973 6026973 C T PMS2 Missense_Mutation p.V475M 0.38 tolerated(0.35) benign(0.002) TCGA-CK-5913-01 7 64168769 64168769 A G ZNF107 Missense_Mutation p.E696G 0.17 deleterious(0) probably_damaging(0.954) TCGA-CK-5913-01 7 72721619 72721619 T C NSUN5 Missense_Mutation p.N118D 0.08 tolerated(0.06) benign(0.26) TCGA-CK-5913-01 7 73021716 73021716 C T MLXIPL Missense_Mutation p.R173H 0.33 deleterious(0) probably_damaging(0.997) TCGA-CK-5913-01 7 73521453 73521453 G A LIMK1 Missense_Mutation p.R332H 0.29 deleterious(0.03) probably_damaging(0.939) TCGA-CK-5913-01 7 73960117 73960117 G A GTF2IRD1 Silent p.E602E 0.31 TCGA-CK-5913-01 7 82584532 82584532 T - PCLO Frame_Shift_Del p.S1913Vfs*9 0.27 TCGA-CK-5913-01 7 83029460 83029460 G T SEMA3E Missense_Mutation p.P417H 0.36 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 7 86509808 86509808 G A KIAA1324L Silent p.T1023T 0.35 TCGA-CK-5913-01 7 90042238 90042238 T C CLDN12 Missense_Mutation p.L83P 0.32 deleterious(0.04) probably_damaging(0.961) TCGA-CK-5913-01 7 90894894 90894894 C T FZD1 Silent p.S233S 0.30 TCGA-CK-5913-01 7 92734396 92734397 - T SAMD9 Frame_Shift_Ins p.F339Ifs*12 0.28 TCGA-CK-5913-01 7 94294964 94294964 G A PEG10 3'UTR 0.39 TCGA-CK-5913-01 7 94879438 94879438 G T PPP1R9A Missense_Mutation p.S756I 0.05 deleterious(0) possibly_damaging(0.747) TCGA-CK-5913-01 7 95035477 95035477 C T PON2 Missense_Mutation p.G287D 0.31 deleterious(0.03) possibly_damaging(0.724) TCGA-CK-5913-01 7 95225561 95225561 G A PDK4 Silent p.N15N 0.16 TCGA-CK-5913-01 8 100654132 100654132 G T VPS13B Missense_Mutation p.G1797C 0.51 deleterious(0) probably_damaging(0.996) TCGA-CK-5913-01 8 101014478 101014478 T - RGS22 Frame_Shift_Del p.K914Nfs*18 0.12 TCGA-CK-5913-01 8 101724630 101724630 C T PABPC1 Missense_Mutation p.R311Q 0.23 deleterious(0.05) possibly_damaging(0.532) TCGA-CK-5913-01 8 102381863 102381863 T C NACAP1 RNA 0.12 TCGA-CK-5913-01 8 103312273 103312274 - G UBR5 Frame_Shift_Ins p.I1021Hfs*5 0.23 TCGA-CK-5913-01 8 104063364 104063364 A T ATP6V1C1 Missense_Mutation p.I125F 0.28 deleterious(0) benign(0.255) TCGA-CK-5913-01 8 104343622 104343622 T C FZD6 Missense_Mutation p.L669S 0.06 tolerated_low_confidence(0.59) benign(0) TCGA-CK-5913-01 8 108264158 108264158 T C ANGPT1 Missense_Mutation p.I474M 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5913-01 8 109260891 109260891 A - EIF3E Frame_Shift_Del p.L14Wfs*5 0.20 TCGA-CK-5913-01 8 110100252 110100252 T C TRHR Missense_Mutation p.Y171H 0.10 deleterious(0.04) possibly_damaging(0.828) TCGA-CK-5913-01 8 120118649 120118649 G T COLEC10 3'UTR 0.28 TCGA-CK-5913-01 8 12044065 12044065 G A FAM86B1 Missense_Mutation p.R146C 0.13 tolerated(0.18) benign(0.01) TCGA-CK-5913-01 8 126448339 126448339 G A TRIB1 Missense_Mutation p.V249M 0.23 deleterious(0) possibly_damaging(0.874) TCGA-CK-5913-01 8 12879405 12879405 C T KIAA1456 Missense_Mutation p.T406I 0.26 tolerated(0.22) benign(0.001) TCGA-CK-5913-01 8 12880252 12880252 G A KIAA1456 3'UTR 0.26 TCGA-CK-5913-01 8 132052108 132052108 G A ADCY8 Missense_Mutation p.R158C 0.26 deleterious(0.03) probably_damaging(0.929) TCGA-CK-5913-01 8 134063073 134063073 C T SLA Missense_Mutation p.R90H 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CK-5913-01 8 136533531 136533531 A T KHDRBS3 Missense_Mutation p.D47V 0.23 deleterious(0) probably_damaging(0.989) TCGA-CK-5913-01 8 139767401 139767401 C T COL22A1 Missense_Mutation p.R677Q 0.26 unknown(0) TCGA-CK-5913-01 8 143425738 143425738 G A TSNARE1 Missense_Mutation p.R112W 0.11 tolerated_low_confidence(0.2) possibly_damaging(0.857) TCGA-CK-5913-01 8 143557947 143557947 C T BAI1 Silent p.P316P 0.24 TCGA-CK-5913-01 8 143746196 143746198 AGG - JRK RNA 0.28 TCGA-CK-5913-01 8 143747047 143747047 C T JRK RNA 0.27 TCGA-CK-5913-01 8 144620385 144620385 G T ZC3H3 Silent p.P384P 0.17 TCGA-CK-5913-01 8 144799895 144799895 G A MAPK15 Missense_Mutation p.R33Q 0.28 tolerated(0.07) benign(0.159) TCGA-CK-5913-01 8 145101649 145101649 C T SPATC1 Missense_Mutation p.A523V 0.28 tolerated(0.06) probably_damaging(0.997) TCGA-CK-5913-01 8 145537195 145537195 A G HSF1 Splice_Site p.X381_splice 0.10 TCGA-CK-5913-01 8 145650177 145650177 C T VPS28 Missense_Mutation p.R109Q 0.30 deleterious(0) probably_damaging(0.996) TCGA-CK-5913-01 8 145659042 145659042 C T TONSL Missense_Mutation p.R1163H 0.31 tolerated(0.62) benign(0.004) TCGA-CK-5913-01 8 145676007 145676007 T C CYHR1 Missense_Mutation p.T282A 0.13 tolerated(0.41) benign(0.011) TCGA-CK-5913-01 8 145699945 145699945 G A FOXH1 Silent p.T258T 0.35 TCGA-CK-5913-01 8 145725482 145725482 C T PPP1R16A Silent p.G160G 0.23 TCGA-CK-5913-01 8 17419602 17419603 - A SLC7A2 Frame_Shift_Ins p.V594Sfs*51 0.09 TCGA-CK-5913-01 8 17612360 17612360 A G MTUS1 Silent p.N319N 0.27 TCGA-CK-5913-01 8 17883089 17883089 A - PCM1 Frame_Shift_Del p.N1992Tfs*15 0.20 TCGA-CK-5913-01 8 18257603 18257603 C T NAT2 Silent p.H30H 0.16 TCGA-CK-5913-01 8 21978605 21978605 G A HR Silent p.F780F 0.17 TCGA-CK-5913-01 8 23150856 23150856 G A R3HCC1 Missense_Mutation p.A169T 0.11 deleterious(0) probably_damaging(0.996) TCGA-CK-5913-01 8 24190179 24190179 A G ADAM28 Missense_Mutation p.T430A 0.12 deleterious(0.03) benign(0.369) TCGA-CK-5913-01 8 24772036 24772036 G A NEFM Missense_Mutation p.D244N 0.19 deleterious(0) unknown(0) TCGA-CK-5913-01 8 25292982 25292982 T C KCTD9 Missense_Mutation p.Y237C 0.06 tolerated(0.2) probably_damaging(0.999) TCGA-CK-5913-01 8 27316066 27316066 C T PTK2B 3'UTR 0.38 TCGA-CK-5913-01 8 27679985 27679985 C T PBK Missense_Mutation p.A106T 0.05 tolerated(0.11) benign(0.256) TCGA-CK-5913-01 8 28573680 28573680 C T EXTL3 Missense_Mutation p.T35M 0.24 tolerated(0.12) benign(0.005) TCGA-CK-5913-01 8 30921847 30921847 G A WRN Silent p.E84E 0.12 TCGA-CK-5913-01 8 38677037 38677037 T A TACC1 Intron 0.23 TCGA-CK-5913-01 8 39537596 39537596 A - ADAM18 Frame_Shift_Del p.N559Mfs*23 0.25 TCGA-CK-5913-01 8 41566384 41566384 G A ANK1 Missense_Mutation p.T670M 0.25 deleterious(0.02) possibly_damaging(0.819) TCGA-CK-5913-01 8 42229165 42229165 G A POLB Missense_Mutation p.R333Q 0.26 deleterious(0) possibly_damaging(0.806) TCGA-CK-5913-01 8 42294528 42294528 G A SLC20A2 Missense_Mutation p.A501V 0.20 deleterious(0) possibly_damaging(0.598) TCGA-CK-5913-01 8 442414 442414 C T TDRP Intron 0.24 TCGA-CK-5913-01 8 48641498 48641498 C T SPIDR Silent p.G813G 0.23 TCGA-CK-5913-01 8 48689477 48689477 T - PRKDC Frame_Shift_Del p.N4036Ifs*15 0.14 TCGA-CK-5913-01 8 48695045 48695045 C T PRKDC Missense_Mutation p.V3763M 0.10 benign(0.102) TCGA-CK-5913-01 8 48716020 48716020 T A PRKDC Nonsense_Mutation p.K3256* 0.29 TCGA-CK-5913-01 8 54792150 54792150 C A RGS20 Missense_Mutation p.S166R 0.27 tolerated_low_confidence(0.08) benign(0.006) TCGA-CK-5913-01 8 62465664 62465664 C T ASPH Missense_Mutation p.G518R 0.24 tolerated(0.08) benign(0.327) TCGA-CK-5913-01 8 67578477 67578477 T C VCPIP1 Silent p.R239R 0.27 TCGA-CK-5913-01 8 69046495 69046495 T C PREX2 Missense_Mutation p.L1323P 0.23 deleterious(0) probably_damaging(0.915) TCGA-CK-5913-01 8 70541766 70541766 A G SULF1 Silent p.K712K 0.13 TCGA-CK-5913-01 8 74601032 74601032 A G STAU2 Missense_Mutation p.L44P 0.26 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 8 82192798 82192798 C T FABP5 5'UTR 0.52 TCGA-CK-5913-01 8 91929794 91929794 G A NECAB1 Silent p.Q144Q 0.16 TCGA-CK-5913-01 8 92972563 92972563 G A RUNX1T1 Silent p.S585S 0.60 TCGA-CK-5913-01 8 94747073 94747073 A G RBM12B Silent p.G522G 0.12 TCGA-CK-5913-01 9 101068579 101068579 C T GABBR2 Missense_Mutation p.A685T 0.36 deleterious(0.03) benign(0.053) TCGA-CK-5913-01 9 106857737 106857737 C T SMC2 Silent p.D24D 0.06 TCGA-CK-5913-01 9 110251577 110251577 T G KLF4 5'UTR 0.29 TCGA-CK-5913-01 9 117169017 117169017 G T DFNB31 Silent p.G618G 0.43 TCGA-CK-5913-01 9 117186673 117186673 T C DFNB31 Missense_Mutation p.S453G 0.15 tolerated(0.13) benign(0.071) TCGA-CK-5913-01 9 123586946 123586947 - A PSMD5 Frame_Shift_Ins p.G278Wfs*8 0.23 TCGA-CK-5913-01 9 123725197 123725197 C A C5 Nonsense_Mutation p.G1458* 0.09 TCGA-CK-5913-01 9 124979387 124979387 G A LHX6 Silent p.Y214Y 0.32 TCGA-CK-5913-01 9 125377354 125377354 T C OR1Q1 Missense_Mutation p.F113S 0.36 deleterious(0.01) possibly_damaging(0.69) TCGA-CK-5913-01 9 127781402 127781402 A G SCAI Missense_Mutation p.V254A 0.19 deleterious(0.01) benign(0.217) TCGA-CK-5913-01 9 130575602 130575602 G A FPGS Missense_Mutation p.G495S 0.28 tolerated(0.53) benign(0.004) TCGA-CK-5913-01 9 130582252 130582252 C - ENG Frame_Shift_Del p.G400Vfs*21 0.30 TCGA-CK-5913-01 9 131231491 131231491 A G ODF2 Silent p.P93P 0.08 TCGA-CK-5913-01 9 131271228 131271228 C T GLE1 Missense_Mutation p.P58L 0.34 deleterious(0.01) benign(0.185) TCGA-CK-5913-01 9 132593208 132593208 C T C9orf78 Missense_Mutation p.E162K 0.18 deleterious(0) probably_damaging(0.981) TCGA-CK-5913-01 9 133540259 133540259 C T PRDM12 Silent p.S73S 0.43 TCGA-CK-5913-01 9 135073941 135073941 C T NTNG2 Missense_Mutation p.R268W 0.36 deleterious(0) probably_damaging(0.987) TCGA-CK-5913-01 9 135073976 135073976 C A NTNG2 Silent p.S279S 0.28 TCGA-CK-5913-01 9 135940527 135940527 C A CEL Silent p.G150G 0.21 TCGA-CK-5913-01 9 137619111 137619111 G T COL5A1 Splice_Site p.X219_splice 0.37 TCGA-CK-5913-01 9 137806650 137806650 G A FCN1 Missense_Mutation p.R75C 0.33 tolerated(0.09) benign(0.118) TCGA-CK-5913-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.43 TCGA-CK-5913-01 9 139904499 139904499 G A ABCA2 Missense_Mutation p.T2144M 0.41 deleterious(0.01) benign(0.342) TCGA-CK-5913-01 9 139937960 139937960 G A NPDC1 Intron 0.17 TCGA-CK-5913-01 9 21142011 21142011 T C IFNW1 5'UTR 0.43 TCGA-CK-5913-01 9 22006166 22006166 A G CDKN2B Silent p.T79T 0.22 TCGA-CK-5913-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.27 TCGA-CK-5913-01 9 35616368 35616369 - T CD72 Intron 0.23 TCGA-CK-5913-01 9 35675793 35675793 G A CA9 Missense_Mutation p.A157T 0.55 deleterious(0.01) possibly_damaging(0.71) TCGA-CK-5913-01 9 36199025 36199025 G A CLTA Missense_Mutation p.R102Q 0.34 tolerated(0.21) benign(0.028) TCGA-CK-5913-01 9 37518244 37518244 C A FBXO10 Missense_Mutation p.G798C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 9 71396072 71396072 T C FAM122A 3'UTR 0.18 TCGA-CK-5913-01 9 73398880 73398880 T C TRPM3 Intron 0.50 TCGA-CK-5913-01 9 7799554 7799554 C T TMEM261 Missense_Mutation p.A61T 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-CK-5913-01 9 79465527 79465527 A T PRUNE2 Missense_Mutation p.F66I 0.39 deleterious(0) probably_damaging(0.999) TCGA-CK-5913-01 9 84531898 84531898 A G SPATA31D5P RNA 0.35 TCGA-CK-5913-01 9 91083295 91083295 C T SPIN1 Nonsense_Mutation p.R122* 0.36 TCGA-CK-5913-01 9 91617077 91617077 G A S1PR3 Missense_Mutation p.R321Q 0.12 tolerated(0.55) benign(0.002) TCGA-CK-5913-01 9 96051773 96051773 C T WNK2 Silent p.G1616G 0.32 TCGA-CK-5913-01 9 96080443 96080443 A - WNK2 3'UTR 0.19 TCGA-CK-5913-01 9 97080878 97080878 G T NUTM2F Missense_Mutation p.P714T 0.27 deleterious(0.05) benign(0.08) TCGA-CK-5913-01 9 97218573 97218573 G A HIATL1 Silent p.P360P 0.16 TCGA-CK-5913-01 X 100088307 100088307 C T CSTF2 Missense_Mutation p.A449V 0.17 tolerated_low_confidence(0.37) benign(0.001) TCGA-CK-5913-01 X 100492763 100492763 C T DRP2 Missense_Mutation p.A146V 0.11 tolerated(0.11) benign(0.001) TCGA-CK-5913-01 X 10085225 10085225 C A WWC3 Missense_Mutation p.R376S 0.16 deleterious(0) probably_damaging(0.99) TCGA-CK-5913-01 X 100871565 100871565 T A ARMCX6 Missense_Mutation p.I16F 0.20 deleterious(0) probably_damaging(0.997) TCGA-CK-5913-01 X 102632630 102632630 A G NGFRAP1 Missense_Mutation p.M71V 0.09 tolerated(1) possibly_damaging(0.621) TCGA-CK-5913-01 X 105178375 105178375 T C NRK Silent p.N1147N 0.14 TCGA-CK-5913-01 X 106843738 106843738 C A FRMPD3 Silent p.A856A 0.26 TCGA-CK-5913-01 X 107464601 107464601 G A COL4A6 Nonsense_Mutation p.R51* 0.50 TCGA-CK-5913-01 X 108718909 108718909 T C GUCY2F Missense_Mutation p.D86G 0.10 deleterious(0) benign(0.371) TCGA-CK-5913-01 X 110988002 110988002 T A ALG13 Silent p.P934P 0.16 TCGA-CK-5913-01 X 117576281 117576281 C T WDR44 Silent p.G747G 0.22 TCGA-CK-5913-01 X 117700115 117700116 - A DOCK11 Frame_Shift_Ins p.E284Gfs*9 0.21 TCGA-CK-5913-01 X 118893350 118893350 G A SOWAHD Silent p.S240S 0.20 TCGA-CK-5913-01 X 119562307 119562308 - A LAMP2 3'UTR 0.27 TCGA-CK-5913-01 X 119761126 119761126 T - C1GALT1C1 Intron 0.29 TCGA-CK-5913-01 X 123587269 123587269 G A TENM1 Missense_Mutation p.A1341V 0.47 deleterious(0) benign(0.039) TCGA-CK-5913-01 X 125299811 125299811 C T DCAF12L2 Missense_Mutation p.G33R 0.24 tolerated(0.24) benign(0.028) TCGA-CK-5913-01 X 125685532 125685532 G A DCAF12L1 Missense_Mutation p.R354W 0.32 deleterious(0) possibly_damaging(0.84) TCGA-CK-5913-01 X 125686446 125686446 C T DCAF12L1 Missense_Mutation p.R49H 0.16 deleterious(0.03) benign(0.022) TCGA-CK-5913-01 X 130411899 130411899 G A IGSF1 Missense_Mutation p.R756C 0.29 deleterious(0.03) probably_damaging(0.961) TCGA-CK-5913-01 X 133559420 133559420 T C PHF6 3'UTR 0.26 TCGA-CK-5913-01 X 134167432 134167432 G A FAM127A 3'UTR 0.24 TCGA-CK-5913-01 X 138664378 138664378 A G MCF2 3'Flank 0.25 TCGA-CK-5913-01 X 138774154 138774154 G A MCF2 Intron 0.23 TCGA-CK-5913-01 X 140995072 140995072 C T MAGEC1 Missense_Mutation p.P628S 0.26 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-CK-5913-01 X 1424694 1424694 C A CSF2RA Intron 0.58 TCGA-CK-5913-01 X 142795100 142795100 T A SPANXN2 3'UTR 0.51 TCGA-CK-5913-01 X 144904738 144904738 A - SLITRK2 Frame_Shift_Del p.S267Vfs*23 0.28 TCGA-CK-5913-01 X 144910885 144910885 C A TMEM257 3'UTR 0.30 TCGA-CK-5913-01 X 146340149 146341922 X:146340149-146341922 - MIR509-3 large deletion 0.23 TCGA-CK-5913-01 X 148578048 148578048 C A IDS Splice_Site p.X26_splice 0.28 TCGA-CK-5913-01 X 1497590 1497590 C T IL3RA Missense_Mutation p.R305W 0.36 tolerated(0.07) benign(0.01) TCGA-CK-5913-01 X 149963928 149963928 C A CD99L2 Missense_Mutation p.K103N 0.52 tolerated(0.07) benign(0.438) TCGA-CK-5913-01 X 150869441 150869442 - T PRRG3 Frame_Shift_Ins p.Y212Lfs*3 0.42 TCGA-CK-5913-01 X 152225784 152225785 - G PNMA3 Frame_Shift_Ins p.S126Vfs*56 0.25 TCGA-CK-5913-01 X 153033176 153033176 C A PLXNB3 Silent p.T321T 0.33 TCGA-CK-5913-01 X 153048470 153048470 C T SRPK3 Silent p.P215P 0.24 TCGA-CK-5913-01 X 153128250 153128250 G A L1CAM Silent p.S1214S 0.24 TCGA-CK-5913-01 X 153578198 153578198 C T FLNA Silent p.A2457A 0.42 TCGA-CK-5913-01 X 153592468 153592468 G T FLNA Silent p.S734S 0.15 TCGA-CK-5913-01 X 153594511 153594511 C T FLNA Missense_Mutation p.R437Q 0.28 deleterious(0.03) benign(0.138) TCGA-CK-5913-01 X 153609402 153609402 C A EMD Missense_Mutation p.R204S 0.25 deleterious(0.01) benign(0.414) TCGA-CK-5913-01 X 153629474 153629474 A G RPL10 3'UTR 0.08 TCGA-CK-5913-01 X 154009556 154009556 C T MPP1 Silent p.S394S 0.42 TCGA-CK-5913-01 X 155005870 155005870 T C SPRY3 3'UTR 0.49 TCGA-CK-5913-01 X 155010302 155010302 G A SPRY3 3'UTR 0.46 TCGA-CK-5913-01 X 155171840 155171840 A - VAMP7 3'UTR 0.24 TCGA-CK-5913-01 X 19032147 19032147 G A GPR64 Silent p.G252G 0.24 TCGA-CK-5913-01 X 20071024 20071024 G A MAP7D2 Silent p.T189T 0.27 TCGA-CK-5913-01 X 21674156 21674156 G A KLHL34 Missense_Mutation p.S584L 0.24 deleterious(0.02) possibly_damaging(0.591) TCGA-CK-5913-01 X 22094568 22094568 C A PHEX Missense_Mutation p.L138I 0.27 deleterious(0) possibly_damaging(0.762) TCGA-CK-5913-01 X 23802086 23802086 G T SAT1 Intron 0.14 TCGA-CK-5913-01 X 24757522 24757522 A T POLA1 Missense_Mutation p.T685S 0.07 tolerated(0.06) benign(0.41) TCGA-CK-5913-01 X 26158116 26158116 C T MAGEB18 Silent p.S338S 0.17 TCGA-CK-5913-01 X 32834749 32834750 - T DMD Frame_Shift_Ins p.N122Kfs*16 0.12 TCGA-CK-5913-01 X 35984705 35984705 A G CXorf22 Silent p.P478P 0.26 TCGA-CK-5913-01 X 36122629 36122629 C A CHDC2 Missense_Mutation p.S289Y 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5913-01 X 37028719 37028719 C T FAM47C Missense_Mutation p.R746W 0.25 deleterious(0) benign(0.266) TCGA-CK-5913-01 X 37979660 37979660 T C SYTL5 Missense_Mutation p.V571A 0.15 deleterious(0) possibly_damaging(0.566) TCGA-CK-5913-01 X 40514248 40514248 G A MED14 Missense_Mutation p.A1346V 0.28 deleterious(0) possibly_damaging(0.487) TCGA-CK-5913-01 X 41334071 41334071 C T NYX Silent p.G455G 0.25 TCGA-CK-5913-01 X 47083901 47083901 G A CDK16 Missense_Mutation p.R181H 0.22 deleterious(0.02) possibly_damaging(0.636) TCGA-CK-5913-01 X 48368059 48368059 G A PORCN 5'Flank 0.16 TCGA-CK-5913-01 X 48463493 48463493 G A WDR13 3'UTR 0.50 TCGA-CK-5913-01 X 48755076 48755076 A G TIMM17B 5'UTR 0.32 TCGA-CK-5913-01 X 48895940 48895940 G A TFE3 Missense_Mutation p.R188C 0.14 deleterious(0) possibly_damaging(0.689) TCGA-CK-5913-01 X 48925140 48925140 G - CCDC120 Frame_Shift_Del p.E464Sfs*172 0.25 TCGA-CK-5913-01 X 49022686 49022686 G - MAGIX Frame_Shift_Del p.A320Qfs*? 0.15 TCGA-CK-5913-01 X 49033535 49033535 C T PRICKLE3 Silent p.Q324Q 0.25 TCGA-CK-5913-01 X 49646961 49646961 A G USP27X 3'UTR 0.22 TCGA-CK-5913-01 X 50144115 50144115 C T DGKK RNA 0.25 TCGA-CK-5913-01 X 50350874 50350874 C A SHROOM4 Missense_Mutation p.D1090Y 0.27 deleterious(0.01) possibly_damaging(0.713) TCGA-CK-5913-01 X 50654009 50654009 C T BMP15 Missense_Mutation p.R76C 0.29 deleterious(0) probably_damaging(0.971) TCGA-CK-5913-01 X 53277315 53277315 G A IQSEC2 Nonsense_Mutation p.R855* 0.15 TCGA-CK-5913-01 X 53440235 53440235 G A SMC1A Missense_Mutation p.R188C 0.30 deleterious(0.02) benign(0.189) TCGA-CK-5913-01 X 54521658 54521658 C T FGD1 Missense_Mutation p.A70T 0.39 tolerated_low_confidence(0.47) benign(0.141) TCGA-CK-5913-01 X 57162472 57162472 G A SPIN2A Missense_Mutation p.R187C 0.24 tolerated(0.09) benign(0.04) TCGA-CK-5913-01 X 57619475 57619475 C T ZXDB Missense_Mutation p.R332W 0.21 deleterious(0) probably_damaging(0.981) TCGA-CK-5913-01 X 595532 595532 C T SHOX Missense_Mutation p.R153C 0.39 deleterious(0) probably_damaging(0.998) TCGA-CK-5913-01 X 64951037 64951037 A T MSN Missense_Mutation p.H179L 0.07 deleterious(0) probably_damaging(1) TCGA-CK-5913-01 X 69420252 69420252 G T DGAT2L6 Missense_Mutation p.G139W 0.15 deleterious(0.04) probably_damaging(0.954) TCGA-CK-5913-01 X 69811648 69811648 T G TEX11 Missense_Mutation p.E713A 0.23 deleterious(0.01) benign(0.437) TCGA-CK-5913-01 X 75651552 75651552 G A MAGEE1 3'UTR 0.28 TCGA-CK-5913-01 X 77393555 77393555 C A TAF9B Silent p.S58S 0.50 TCGA-CK-5913-01 X 77912708 77912708 T - ZCCHC5 Frame_Shift_Del p.S404Vfs*101 0.27 TCGA-CK-5913-01 X 7812048 7812048 G A VCX Silent p.P204P 0.08 TCGA-CK-5913-01 X 79286614 79286614 G T TBX22 3'UTR 0.20 TCGA-CK-5913-01 X 79990690 79990690 G A BRWD3 Silent p.R307R 0.19 TCGA-CK-5913-01 X 83599350 83599350 A G HDX Missense_Mutation p.L523P 0.49 tolerated(0.12) benign(0.394) TCGA-CK-5913-01 X 84362953 84362953 A G SATL1 Missense_Mutation p.L341P 0.08 tolerated(0.17) benign(0.007) TCGA-CK-5913-01 X 84525922 84525922 T C ZNF711 Silent p.A458A 0.08 TCGA-CK-5913-01 X 8993584 8993585 - A FAM9B Frame_Shift_Ins p.S178Ffs*3 0.23 TCGA-CK-5914-01 10 101716100 101716100 G A DNMBP Silent p.D377D 0.23 TCGA-CK-5914-01 10 118084588 118084588 G A CCDC172 Missense_Mutation p.R22H 0.45 tolerated(0.06) probably_damaging(0.999) TCGA-CK-5914-01 10 128118365 128118365 C T C10orf90 Missense_Mutation p.R651Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5914-01 10 128193011 128193011 T A C10orf90 Missense_Mutation p.H253L 0.24 deleterious(0) possibly_damaging(0.643) TCGA-CK-5914-01 10 134598640 134598640 T A NKX6-2 Missense_Mutation p.K205M 0.33 deleterious(0) probably_damaging(0.998) TCGA-CK-5914-01 10 24669871 24669871 C A KIAA1217 Missense_Mutation p.T143K 0.32 deleterious(0) benign(0.41) TCGA-CK-5914-01 10 53457254 53457254 A G CSTF2T 3'UTR 0.38 TCGA-CK-5914-01 10 7214484 7214484 G A SFMBT2 Silent p.A708A 0.63 TCGA-CK-5914-01 10 8006454 8006454 G A TAF3 Silent p.T327T 0.24 TCGA-CK-5914-01 11 102937290 102937290 G A DCUN1D5 Silent p.D116D 0.55 TCGA-CK-5914-01 11 111753245 111753245 C A C11orf1 Missense_Mutation p.R67S 0.19 tolerated(0.24) benign(0.126) TCGA-CK-5914-01 11 117166049 117166049 C T BACE1 Missense_Mutation p.R122Q 0.22 tolerated(0.23) possibly_damaging(0.542) TCGA-CK-5914-01 11 121008227 121008227 C T TECTA Silent p.C1013C 0.57 TCGA-CK-5914-01 11 124180035 124180035 G T OR8D1 Missense_Mutation p.P210T 0.21 tolerated(0.35) possibly_damaging(0.467) TCGA-CK-5914-01 11 124766153 124766153 C A ROBO4 Missense_Mutation p.C207F 0.21 deleterious(0) probably_damaging(0.998) TCGA-CK-5914-01 11 124949054 124949054 G T SLC37A2 Nonsense_Mutation p.G121* 0.24 TCGA-CK-5914-01 11 134119154 134119154 G A THYN1 Silent p.I129I 0.25 TCGA-CK-5914-01 11 48347276 48347276 C A OR4C3 Missense_Mutation p.L262I 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-CK-5914-01 11 64120238 64120238 C T CCDC88B Missense_Mutation p.R1127W 0.50 deleterious(0) probably_damaging(0.938) TCGA-CK-5914-01 11 66288859 66288859 C T BBS1 Intron 0.26 TCGA-CK-5914-01 11 70338544 70338544 A G SHANK2 Missense_Mutation p.S780P 0.08 tolerated(0.13) benign(0.016) TCGA-CK-5914-01 11 78565287 78565287 G A TENM4 Missense_Mutation p.R515C 0.47 deleterious(0) benign(0.416) TCGA-CK-5914-01 12 100784835 100784835 C G SLC17A8 Missense_Mutation p.F137L 0.29 deleterious(0.03) possibly_damaging(0.612) TCGA-CK-5914-01 12 108685842 108685842 G T CMKLR1 Missense_Mutation p.L300M 0.22 deleterious(0.01) possibly_damaging(0.864) TCGA-CK-5914-01 12 117710315 117710315 C T NOS1 Missense_Mutation p.V572M 0.19 deleterious(0) probably_damaging(0.995) TCGA-CK-5914-01 12 132588943 132588943 G A EP400NL Intron 0.47 TCGA-CK-5914-01 12 54338884 54338884 C T HOXC13 Silent p.Y279Y 0.53 TCGA-CK-5914-01 12 56428840 56428840 G A IKZF4 Missense_Mutation p.A495T 0.69 tolerated(0.22) benign(0.019) TCGA-CK-5914-01 12 72667272 72667272 C T TRHDE Silent p.N238N 0.62 TCGA-CK-5914-01 12 75678791 75678791 G A CAPS2 Missense_Mutation p.R508C 0.53 deleterious(0.01) probably_damaging(0.977) TCGA-CK-5914-01 12 76741300 76741300 A G BBS10 Silent p.S155S 0.51 TCGA-CK-5914-01 12 80839297 80839297 G A PTPRQ Missense_Mutation p.G64R 0.23 deleterious(0) probably_damaging(1) TCGA-CK-5914-01 12 81239712 81239712 C T LIN7A Missense_Mutation p.V94I 0.52 deleterious(0.05) benign(0.417) TCGA-CK-5914-01 12 85517969 85517969 G A LRRIQ1 Missense_Mutation p.E1227K 0.30 tolerated(0.23) possibly_damaging(0.73) TCGA-CK-5914-01 13 101735448 101735448 C A NALCN Missense_Mutation p.V1229F 0.11 tolerated(0.09) benign(0.214) TCGA-CK-5914-01 13 101756745 101756745 G A NALCN Silent p.S930S 0.36 TCGA-CK-5914-01 13 23898555 23898555 A G SGCG Missense_Mutation p.T251A 0.20 tolerated(0.27) benign(0.015) TCGA-CK-5914-01 13 27239196 27239196 G T WASF3 Missense_Mutation p.L55F 0.12 deleterious(0) probably_damaging(1) TCGA-CK-5914-01 13 35745555 35745555 T A NBEA Silent p.S1463S 0.12 TCGA-CK-5914-01 13 37016313 37016313 A G CCNA1 Silent p.E406E 0.13 TCGA-CK-5914-01 13 39621239 39621239 G T NHLRC3 Missense_Mutation p.W247C 0.12 deleterious(0) possibly_damaging(0.907) TCGA-CK-5914-01 13 52598401 52598401 G A ALG11 Missense_Mutation p.A179T 0.14 deleterious(0.01) possibly_damaging(0.57) TCGA-CK-5914-01 13 60545100 60545100 G A DIAPH3 Silent p.P615P 0.13 TCGA-CK-5914-01 13 76335007 76335007 T A LMO7 5'UTR 0.24 TCGA-CK-5914-01 13 95364214 95364214 G A SOX21 Silent p.N30N 0.11 TCGA-CK-5914-01 14 101005137 101005137 C T BEGAIN Silent p.T317T 0.46 TCGA-CK-5914-01 14 55655872 55655872 C T DLGAP5 Missense_Mutation p.R9Q 0.80 tolerated(0.06) possibly_damaging(0.581) TCGA-CK-5914-01 14 58604716 58604716 G T C14orf37 Missense_Mutation p.T454K 0.57 deleterious(0.02) possibly_damaging(0.607) TCGA-CK-5914-01 14 70515753 70515753 T C SLC8A3 Missense_Mutation p.D713G 0.09 tolerated(0.05) possibly_damaging(0.645) TCGA-CK-5914-01 14 86092991 86092991 A T FLRT2 3'UTR 0.30 TCGA-CK-5914-01 15 23326289 23326289 C T HERC2P2 RNA 0.22 TCGA-CK-5914-01 15 38643718 38643720 CGA - SPRED1 In_Frame_Del p.D398del 0.29 TCGA-CK-5914-01 15 41099786 41099786 G T ZFYVE19 5'UTR 0.24 TCGA-CK-5914-01 15 90220725 90220725 G A PLIN1 5'UTR 0.30 TCGA-CK-5914-01 16 11770523 11770523 G C SNN 3'UTR 0.26 TCGA-CK-5914-01 16 23768995 23768995 T C CHP2 3'UTR 0.37 TCGA-CK-5914-01 16 24788590 24788590 A C TNRC6A Missense_Mutation p.K167T 0.25 tolerated(0.22) probably_damaging(0.994) TCGA-CK-5914-01 16 31391361 31391361 C T ITGAX Missense_Mutation p.A1012V 0.45 tolerated(0.08) benign(0) TCGA-CK-5914-01 16 3545380 3545380 T C C16orf90 Silent p.R14R 0.17 TCGA-CK-5914-01 16 47486679 47486679 G A ITFG1 Silent p.L150L 0.19 TCGA-CK-5914-01 16 49670811 49670811 C T ZNF423 Missense_Mutation p.R751H 0.52 deleterious(0.01) possibly_damaging(0.65) TCGA-CK-5914-01 16 69404321 69404321 A G TERF2 Intron 0.09 TCGA-CK-5914-01 16 84050848 84050848 C T SLC38A8 Missense_Mutation p.V284I 0.45 tolerated(1) benign(0.012) TCGA-CK-5914-01 16 86613217 86613217 G A FOXL1 Silent p.S296S 0.50 TCGA-CK-5914-01 16 89598891 89598891 C T SPG7 Missense_Mutation p.R391W 0.17 deleterious(0) probably_damaging(1) TCGA-CK-5914-01 17 33481732 33481732 C T UNC45B Missense_Mutation p.S204L 0.17 tolerated(0.1) benign(0.174) TCGA-CK-5914-01 17 46670544 46670544 G A HOXB5 Silent p.A167A 0.31 TCGA-CK-5914-01 17 48655772 48655772 G T CACNA1G Silent p.L716L 0.33 TCGA-CK-5914-01 17 56649295 56649295 C A TEX14 Missense_Mutation p.R1281I 0.31 deleterious(0.04) benign(0.374) TCGA-CK-5914-01 17 65734053 65734053 A G NOL11 Silent p.E498E 0.28 TCGA-CK-5914-01 17 74289960 74289960 C T QRICH2 Missense_Mutation p.R117Q 0.52 tolerated(1) benign(0) TCGA-CK-5914-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.69 deleterious(0) probably_damaging(1) TCGA-CK-5914-01 17 78354770 78354770 G A RNF213 Missense_Mutation p.A4594T 0.37 possibly_damaging(0.539) TCGA-CK-5914-01 19 10906795 10906795 A C DNM2 Intron 0.21 TCGA-CK-5914-01 19 12786914 12786914 C A DHPS Nonsense_Mutation p.E311* 0.56 TCGA-CK-5914-01 19 17329024 17329024 G A USE1 Intron 0.17 TCGA-CK-5914-01 19 17972970 17972970 G A RPL18A Missense_Mutation p.G89D 0.22 deleterious(0.03) possibly_damaging(0.568) TCGA-CK-5914-01 19 18053492 18053492 C T CCDC124 Nonsense_Mutation p.Q63* 0.34 TCGA-CK-5914-01 19 425126 425126 T C SHC2 Missense_Mutation p.D427G 0.38 tolerated(0.5) benign(0.026) TCGA-CK-5914-01 19 44419325 44419325 G A ZNF45 Missense_Mutation p.T88I 0.25 tolerated(0.08) benign(0.002) TCGA-CK-5914-01 19 4512550 4512550 G A PLIN4 Silent p.T460T 0.45 TCGA-CK-5914-01 19 46973350 46973350 G A PNMAL1 Missense_Mutation p.P315S 0.19 deleterious(0.01) possibly_damaging(0.803) TCGA-CK-5914-01 19 4792977 4792977 C T FEM1A Missense_Mutation p.R371C 0.19 deleterious(0) probably_damaging(1) TCGA-CK-5914-01 19 54631479 54631479 G A PRPF31 Missense_Mutation p.R326H 0.11 tolerated(0.11) benign(0.006) TCGA-CK-5914-01 19 56499283 56499283 G A NLRP8 3'UTR 0.34 TCGA-CK-5914-01 19 629785 629785 G A POLRMT Missense_Mutation p.R193W 0.51 tolerated(0.16) benign(0.001) TCGA-CK-5914-01 19 727624 727624 G A PALM Missense_Mutation p.D67N 0.23 deleterious(0.03) benign(0.027) TCGA-CK-5914-01 19 890170 890170 C T MED16 Missense_Mutation p.E82K 0.45 tolerated(0.1) possibly_damaging(0.635) TCGA-CK-5914-01 19 964975 964975 G A ARID3A Missense_Mutation p.G365R 0.29 deleterious(0.01) possibly_damaging(0.873) TCGA-CK-5914-01 1 118550740 118550740 C G SPAG17 Missense_Mutation p.C1505S 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-CK-5914-01 1 145115793 145115793 G A SEC22B RNA 0.06 TCGA-CK-5914-01 1 152883271 152883271 T G IVL Missense_Mutation p.L333R 0.24 tolerated(0.86) probably_damaging(0.993) TCGA-CK-5914-01 1 153234354 153234354 C T LOR Missense_Mutation p.P310L 0.29 unknown(0) TCGA-CK-5914-01 1 169391504 169391504 A G CCDC181 Silent p.N55N 0.23 TCGA-CK-5914-01 1 186114612 186114612 C T HMCN1 Missense_Mutation p.R4782C 0.24 probably_damaging(0.995) TCGA-CK-5914-01 1 201104823 201104823 T C TMEM9 Missense_Mutation p.T174A 0.21 deleterious(0.04) benign(0.027) TCGA-CK-5914-01 1 40033434 40033434 T C PABPC4 Missense_Mutation p.T321A 0.65 deleterious(0) probably_damaging(0.967) TCGA-CK-5914-01 1 42050411 42050411 G A HIVEP3 Missense_Mutation p.R20W 0.29 benign(0.025) TCGA-CK-5914-01 1 55183186 55183186 A G TTC4 Missense_Mutation p.D84G 0.23 deleterious(0.03) benign(0.078) TCGA-CK-5914-01 1 75037640 75037640 C T C1orf173 Missense_Mutation p.A1252T 0.53 tolerated(0.2) benign(0.03) TCGA-CK-5914-01 1 75038492 75038492 C T C1orf173 Missense_Mutation p.D968N 0.28 tolerated(0.15) possibly_damaging(0.463) TCGA-CK-5914-01 1 82456645 82456645 G C LPHN2 Missense_Mutation p.R1343T 0.29 tolerated_low_confidence(0.36) benign(0.131) TCGA-CK-5914-01 20 1515053 1515053 G A SIRPD 3'UTR 0.37 TCGA-CK-5914-01 20 33147623 33147623 C T MAP1LC3A Missense_Mutation p.A100V 0.09 deleterious(0.02) benign(0.008) TCGA-CK-5914-01 20 43353411 43353411 G A WISP2 Missense_Mutation p.G104S 0.15 deleterious(0.02) probably_damaging(1) TCGA-CK-5914-01 20 48479519 48479519 C T SLC9A8 Missense_Mutation p.T272I 0.09 tolerated(0.66) benign(0.009) TCGA-CK-5914-01 20 54824829 54824829 T G MC3R Missense_Mutation p.F310L 0.08 tolerated(0.65) probably_damaging(0.993) TCGA-CK-5914-01 20 62319405 62319405 T A RTEL1 Splice_Site p.X556_splice 0.07 TCGA-CK-5914-01 21 10916439 10916439 G T TPTE Missense_Mutation p.L403I 0.10 tolerated(0.51) benign(0.002) TCGA-CK-5914-01 21 31709948 31709948 G T KRTAP27-1 Missense_Mutation p.H13Q 0.32 tolerated(0.24) benign(0.024) TCGA-CK-5914-01 21 46876425 46876425 C T COL18A1 Intron 0.32 TCGA-CK-5914-01 21 47551894 47551894 C T COL6A2 Missense_Mutation p.R830W 0.21 deleterious(0) probably_damaging(0.997) TCGA-CK-5914-01 21 47684123 47684123 C T MCM3AP Silent p.A1081A 0.43 TCGA-CK-5914-01 22 18020244 18020244 C T CECR2 Nonsense_Mutation p.R526* 0.25 TCGA-CK-5914-01 22 26743720 26743720 G A SEZ6L Missense_Mutation p.E750K 0.21 deleterious(0) probably_damaging(1) TCGA-CK-5914-01 2 116600017 116600017 C A DPP10 3'Flank 0.18 TCGA-CK-5914-01 2 165952125 165952125 A G SCN3A Missense_Mutation p.Y1443H 0.20 deleterious(0) possibly_damaging(0.776) TCGA-CK-5914-01 2 179559361 179559361 C T TTN Missense_Mutation p.R10464Q 0.43 TCGA-CK-5914-01 2 189870102 189870102 C T COL3A1 Silent p.N986N 0.28 TCGA-CK-5914-01 2 204305343 204305343 G A RAPH1 Missense_Mutation p.P857L 0.22 probably_damaging(0.913) TCGA-CK-5914-01 2 207530607 207530607 C T DYTN Missense_Mutation p.R376K 0.65 tolerated(1) benign(0.007) TCGA-CK-5914-01 2 219868912 219868912 C A CCDC108 Nonsense_Mutation p.E1773* 0.21 TCGA-CK-5914-01 2 220034582 220034582 G T SLC23A3 Missense_Mutation p.S42Y 0.43 deleterious_low_confidence(0) possibly_damaging(0.515) TCGA-CK-5914-01 2 238283277 238283277 C T COL6A3 Missense_Mutation p.V1153M 0.60 probably_damaging(0.965) TCGA-CK-5914-01 2 27258062 27258062 C A TMEM214 Missense_Mutation p.N137K 0.19 deleterious(0) possibly_damaging(0.727) TCGA-CK-5914-01 2 49247269 49247269 C A FSHR Silent p.V85V 0.22 TCGA-CK-5914-01 2 50318584 50318584 C T NRXN1 Missense_Mutation p.A1239T 0.21 tolerated(1) benign(0.002) TCGA-CK-5914-01 2 68622935 68622935 G A PLEK Missense_Mutation p.R347Q 0.62 tolerated(0.06) possibly_damaging(0.496) TCGA-CK-5914-01 2 98341593 98341593 G A ZAP70 Silent p.P147P 0.58 TCGA-CK-5914-01 3 119900115 119900115 C - GPR156 Frame_Shift_Del p.V264Sfs*13 0.34 TCGA-CK-5914-01 3 129158751 129158751 C G MBD4 5'UTR 0.20 TCGA-CK-5914-01 3 130284201 130284201 G A COL6A6 Missense_Mutation p.R342Q 0.18 deleterious(0.04) benign(0.12) TCGA-CK-5914-01 3 16358519 16358519 T G RFTN1 Missense_Mutation p.E518A 0.18 tolerated_low_confidence(0.2) benign(0.124) TCGA-CK-5914-01 3 191888366 191888366 C T FGF12 Missense_Mutation p.R165H 0.19 deleterious(0.01) possibly_damaging(0.72) TCGA-CK-5914-01 3 25775391 25775391 C T NGLY1 Missense_Mutation p.R411Q 0.22 tolerated(0.14) benign(0.145) TCGA-CK-5914-01 3 30713602 30713602 G A TGFBR2 Silent p.T334T 0.29 TCGA-CK-5914-01 3 48623628 48623628 C T COL7A1 Missense_Mutation p.R1201H 0.53 unknown(0) TCGA-CK-5914-01 3 49084575 49084575 T C QRICH1 Silent p.V481V 0.52 TCGA-CK-5914-01 3 9860628 9860628 T C TTLL3 Intron 0.08 TCGA-CK-5914-01 4 115997885 115997885 C T NDST4 Missense_Mutation p.R103Q 0.33 deleterious(0.02) benign(0.002) TCGA-CK-5914-01 4 123838671 123838671 G C NUDT6 Missense_Mutation p.Q143E 0.58 deleterious(0.01) probably_damaging(0.981) TCGA-CK-5914-01 4 123838769 123838769 G T NUDT6 Missense_Mutation p.S110Y 0.52 deleterious(0.01) possibly_damaging(0.768) TCGA-CK-5914-01 4 140201302 140201302 C T MGARP Missense_Mutation p.R4H 0.79 deleterious(0.01) probably_damaging(0.998) TCGA-CK-5914-01 4 156135548 156135548 G A NPY2R Missense_Mutation p.V153I 0.28 tolerated(0.35) benign(0.333) TCGA-CK-5914-01 4 158041798 158041798 A G GLRB Missense_Mutation p.I71M 0.50 deleterious(0.01) possibly_damaging(0.702) TCGA-CK-5914-01 4 90857546 90857546 G A MMRN1 Silent p.A905A 0.49 TCGA-CK-5914-01 5 102440298 102440303 ATAAGA - GIN1 In_Frame_Del p.F194_L195del 0.21 TCGA-CK-5914-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.53 TCGA-CK-5914-01 5 112178369 112178369 G A APC Missense_Mutation p.G2360S 0.51 benign(0.099) TCGA-CK-5914-01 5 137419609 137419609 C - WNT8A 5'Flank 0.50 TCGA-CK-5914-01 5 137419611 137419611 G A WNT8A 5'Flank 0.47 TCGA-CK-5914-01 5 140187186 140187186 G C PCDHA4 Missense_Mutation p.K138N 0.22 deleterious_low_confidence(0) benign(0.367) TCGA-CK-5914-01 5 140222774 140222774 G A PCDHA8 Missense_Mutation p.R623H 0.51 deleterious_low_confidence(0.01) benign(0.152) TCGA-CK-5914-01 5 140229530 140229530 G A PCDHA9 Missense_Mutation p.A484T 0.22 tolerated_low_confidence(0.05) benign(0.119) TCGA-CK-5914-01 5 140740557 140740557 C T PCDHGB2 Silent p.D285D 0.22 TCGA-CK-5914-01 5 140750324 140750324 G C PCDHGB3 Silent p.V121V 0.28 TCGA-CK-5914-01 5 161580376 161580376 G A GABRG2 3'UTR 0.29 TCGA-CK-5914-01 5 178562924 178562924 G A ADAMTS2 Missense_Mutation p.R691C 0.53 deleterious(0) probably_damaging(0.978) TCGA-CK-5914-01 5 67522583 67522583 G T PIK3R1 Missense_Mutation p.G27V 0.28 deleterious(0) probably_damaging(1) TCGA-CK-5914-01 5 72196848 72196848 C T TNPO1 Missense_Mutation p.A821V 0.26 deleterious(0) possibly_damaging(0.834) TCGA-CK-5914-01 6 102337643 102337643 C T GRIK2 Silent p.G551G 0.85 TCGA-CK-5914-01 6 118635430 118635430 T G SLC35F1 3'UTR 0.13 TCGA-CK-5914-01 6 125597198 125597198 C A HDDC2 3'UTR 0.81 TCGA-CK-5914-01 6 1613163 1613163 A T FOXC1 3'UTR 0.16 TCGA-CK-5914-01 6 166872948 166872948 C T RPS6KA2 Missense_Mutation p.R363Q 0.86 tolerated(0.05) benign(0.187) TCGA-CK-5914-01 6 27792017 27792020 GCTC - HIST1H4J Frame_Shift_Del p.R40Afs*4 0.86 TCGA-CK-5914-01 7 1022953 1022953 C T CYP2W1 Missense_Mutation p.R36C 0.09 deleterious(0.03) benign(0.027) TCGA-CK-5914-01 7 121691479 121691479 C T PTPRZ1 Intron 0.42 TCGA-CK-5914-01 7 123517217 123517217 G T HYAL4 3'UTR 0.21 TCGA-CK-5914-01 7 146536854 146536854 T A CNTNAP2 Missense_Mutation p.V87D 0.24 deleterious(0) probably_damaging(0.985) TCGA-CK-5914-01 7 157874035 157874035 C T PTPRN2 Missense_Mutation p.A560T 0.18 tolerated(0.33) benign(0.098) TCGA-CK-5914-01 7 23509763 23509764 - A IGF2BP3 5'UTR 0.28 TCGA-CK-5914-01 7 24331310 24331310 G A NPY 3'UTR 0.18 TCGA-CK-5914-01 7 35242168 35242168 C A TBX20 Missense_Mutation p.M406I 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-CK-5914-01 7 3678679 3678679 C T SDK1 Missense_Mutation p.R168C 0.48 deleterious(0.01) benign(0.226) TCGA-CK-5914-01 7 40085537 40085537 G C CDK13 Missense_Mutation p.R819T 0.22 deleterious(0.02) probably_damaging(0.989) TCGA-CK-5914-01 7 4899259 4899259 G A PAPOLB 3'UTR 0.19 TCGA-CK-5914-01 7 50467693 50467693 G A IKZF1 Missense_Mutation p.V268M 0.19 tolerated(0.66) benign(0.189) TCGA-CK-5914-01 7 5327497 5327497 C T SLC29A4 Missense_Mutation p.T17I 0.17 deleterious_low_confidence(0) benign(0.342) TCGA-CK-5914-01 7 73007957 73007957 G A MLXIPL 3'UTR 0.56 TCGA-CK-5914-01 7 88962984 88962984 A T ZNF804B Nonsense_Mutation p.K230* 0.18 TCGA-CK-5914-01 7 88963381 88963381 A G ZNF804B Missense_Mutation p.Q362R 0.18 deleterious(0) possibly_damaging(0.886) TCGA-CK-5914-01 7 98645414 98645414 C T SMURF1 Missense_Mutation p.E375K 0.13 tolerated(1) benign(0.001) TCGA-CK-5914-01 8 105367329 105367329 A G DCSTAMP Silent p.Q418Q 0.30 TCGA-CK-5914-01 8 125463655 125463655 A G TRMT12 Missense_Mutation p.T163A 0.24 tolerated(0.34) benign(0.002) TCGA-CK-5914-01 8 140743464 140743464 G A TRAPPC9 Missense_Mutation p.P1194L 0.67 deleterious(0.04) probably_damaging(0.992) TCGA-CK-5914-01 8 144810284 144810284 G A FAM83H Silent p.H449H 0.33 TCGA-CK-5914-01 8 32600352 32600352 A T NRG1 Intron 0.23 TCGA-CK-5914-01 9 105767125 105767125 A C CYLC2 Missense_Mutation p.K110T 0.23 deleterious(0.02) probably_damaging(0.977) TCGA-CK-5914-01 9 112185066 112185066 T A PTPN3 Missense_Mutation p.R356S 0.37 tolerated(0.08) benign(0.018) TCGA-CK-5914-01 9 125486855 125486855 G T OR1L4 Missense_Mutation p.S196I 0.28 tolerated(0.06) possibly_damaging(0.756) TCGA-CK-5914-01 9 137804984 137804984 G A FCN1 Missense_Mutation p.R116C 0.41 deleterious(0) possibly_damaging(0.472) TCGA-CK-5914-01 9 140109348 140109348 G A NDOR1 Missense_Mutation p.E315K 0.41 deleterious(0.02) possibly_damaging(0.682) TCGA-CK-5914-01 9 23762155 23762155 C T ELAVL2 Silent p.S26S 0.40 TCGA-CK-5914-01 9 67938640 67938640 C G ANKRD20A1 Missense_Mutation p.L259V 0.33 tolerated(1) possibly_damaging(0.874) TCGA-CK-5914-01 9 94519784 94519784 G A ROR2 Missense_Mutation p.T78M 0.43 tolerated(0.06) benign(0.378) TCGA-CK-5914-01 X 134991924 134991924 G T SAGE1 Missense_Mutation p.S570I 0.50 deleterious(0.03) probably_damaging(0.975) TCGA-CK-5914-01 X 149905124 149905124 T C MTMR1 Silent p.L372L 0.33 TCGA-CK-5915-01 10 101122095 101122095 C T CNNM1 Missense_Mutation p.P657L 0.41 deleterious(0.02) benign(0.054) TCGA-CK-5915-01 10 114849256 114849256 G A TCF7L2 Intron 0.53 TCGA-CK-5915-01 10 124457346 124457346 C T C10orf120 Missense_Mutation p.R304Q 0.41 tolerated(0.11) probably_damaging(0.997) TCGA-CK-5915-01 10 128147770 128147770 C T C10orf90 Missense_Mutation p.R579H 0.48 tolerated(0.86) benign(0.001) TCGA-CK-5915-01 10 24835064 24835064 G A KIAA1217 Silent p.Q1881Q 0.29 TCGA-CK-5915-01 10 26243890 26243890 T C MYO3A Missense_Mutation p.F86L 0.45 tolerated(0.43) benign(0.042) TCGA-CK-5915-01 10 27324093 27324093 G A ANKRD26 Missense_Mutation p.R1096W 0.46 tolerated(0.19) possibly_damaging(0.72) TCGA-CK-5915-01 10 50819359 50819359 C T SLC18A3 Silent p.F191F 0.42 TCGA-CK-5915-01 10 97117517 97117517 C T SORBS1 Missense_Mutation p.G667R 0.46 tolerated(0.17) probably_damaging(0.922) TCGA-CK-5915-01 11 12379870 12379870 C T MICALCL Silent p.N644N 0.47 TCGA-CK-5915-01 11 133714183 133714183 T C SPATA19 Missense_Mutation p.E106G 0.47 tolerated(0.17) benign(0.025) TCGA-CK-5915-01 11 16133450 16133450 G A SOX6 Missense_Mutation p.P266L 0.37 tolerated(0.21) probably_damaging(1) TCGA-CK-5915-01 11 32861694 32861694 G A PRRG4 Missense_Mutation p.G120R 0.43 deleterious(0) probably_damaging(0.999) TCGA-CK-5915-01 11 57076173 57076173 C T TNKS1BP1 Missense_Mutation p.G1338R 0.09 tolerated(0.15) probably_damaging(0.986) TCGA-CK-5915-01 11 77705670 77705670 T C INTS4 Missense_Mutation p.K7R 0.56 deleterious(0) benign(0.128) TCGA-CK-5915-01 12 111748483 111748483 C T CUX2 Nonsense_Mutation p.R633* 0.65 TCGA-CK-5915-01 12 121868242 121868242 G A KDM2B Missense_Mutation p.S1287F 0.19 deleterious(0.04) benign(0.124) TCGA-CK-5915-01 12 122252101 122252101 G A SETD1B Missense_Mutation p.M660I 0.56 unknown(0) TCGA-CK-5915-01 12 130185157 130185157 C T TMEM132D Missense_Mutation p.A56T 0.41 tolerated(0.09) benign(0.08) TCGA-CK-5915-01 12 26277466 26277466 G A BHLHE41 Nonsense_Mutation p.R38* 0.45 TCGA-CK-5915-01 12 28116299 28116299 G A PTHLH Missense_Mutation p.S169L 0.48 deleterious_low_confidence(0.04) benign(0.005) TCGA-CK-5915-01 12 32949048 32949048 G A PKP2 Silent p.G828G 0.48 TCGA-CK-5915-01 13 25670399 25670399 C T PABPC3 Silent p.D21D 0.28 TCGA-CK-5915-01 13 32363296 32363296 C T RXFP2 Nonsense_Mutation p.R371* 0.23 TCGA-CK-5915-01 13 48985863 48985864 - A LPAR6 Frame_Shift_Ins p.V233Cfs*30 0.38 TCGA-CK-5915-01 15 27193198 27193198 G T GABRA5 Missense_Mutation p.V403F 0.30 tolerated(0.78) benign(0.401) TCGA-CK-5915-01 15 40933207 40933207 G A CASC5 Missense_Mutation p.R1953H 0.25 deleterious(0) possibly_damaging(0.729) TCGA-CK-5915-01 15 42734425 42734425 C T ZNF106 Silent p.T1180T 0.67 TCGA-CK-5915-01 15 72102982 72102982 A G NR2E3 RNA 0.12 TCGA-CK-5915-01 15 75042348 75042348 G A CYP1A2 Missense_Mutation p.R90H 0.33 deleterious(0) benign(0.181) TCGA-CK-5915-01 15 86123755 86123755 A G AKAP13 Missense_Mutation p.H819R 0.41 tolerated_low_confidence(0.06) benign(0.155) TCGA-CK-5915-01 16 89922043 89922043 C T SPIRE2 Silent p.D309D 0.26 TCGA-CK-5915-01 17 38512614 38512614 G A RARA 3'UTR 0.38 TCGA-CK-5915-01 17 38785106 38785106 C T SMARCE1 Silent p.S389S 0.63 TCGA-CK-5915-01 17 38798601 38798602 - T SMARCE1 Intron 0.27 TCGA-CK-5915-01 17 40317522 40317522 C T KCNH4 Missense_Mutation p.R677Q 0.59 tolerated(0.38) benign(0.001) TCGA-CK-5915-01 17 42512519 42512519 G T GPATCH8 Missense_Mutation p.L88I 0.26 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-CK-5915-01 17 43183049 43183049 G A NMT1 3'UTR 0.37 TCGA-CK-5915-01 17 43339416 43339416 C T SPATA32 5'UTR 0.32 TCGA-CK-5915-01 17 62034767 62034767 C T SCN4A Missense_Mutation p.V711M 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5915-01 17 6594169 6594169 C T SLC13A5 Missense_Mutation p.V456I 0.36 tolerated(0.92) benign(0.007) TCGA-CK-5915-01 17 73059135 73059135 G A KCTD2 Missense_Mutation p.R262Q 0.28 deleterious(0.03) possibly_damaging(0.545) TCGA-CK-5915-01 17 73831811 73831811 C T UNC13D Silent p.V548V 0.26 TCGA-CK-5915-01 17 80395229 80395229 G A HEXDC Missense_Mutation p.G297S 0.26 tolerated(0.06) probably_damaging(0.985) TCGA-CK-5915-01 18 10526149 10526149 A G NAPG Missense_Mutation p.E17G 0.12 deleterious(0) possibly_damaging(0.891) TCGA-CK-5915-01 18 3456572 3456573 - CT TGIF1 Frame_Shift_Ins p.Q210Yfs*19 0.23 TCGA-CK-5915-01 19 11453754 11453754 C T TMEM205 Missense_Mutation p.A103T 0.17 tolerated(0.2) possibly_damaging(0.841) TCGA-CK-5915-01 19 14091417 14091417 C T RFX1 Missense_Mutation p.G236S 0.52 tolerated_low_confidence(0.18) benign(0.017) TCGA-CK-5915-01 19 17622688 17622688 C T PGLS Silent p.S69S 0.55 TCGA-CK-5915-01 19 2834914 2834914 G A ZNF554 3'UTR 0.52 TCGA-CK-5915-01 19 36883567 36883567 T C ZFP82 3'UTR 0.64 TCGA-CK-5915-01 19 40433200 40433200 C T FCGBP Missense_Mutation p.V357M 0.23 possibly_damaging(0.747) TCGA-CK-5915-01 19 50662486 50662486 C T IZUMO2 Splice_Site p.X139_splice 0.52 TCGA-CK-5915-01 19 51512445 51512445 C T KLK9 Missense_Mutation p.R65H 0.44 tolerated(0.17) benign(0.005) TCGA-CK-5915-01 19 57286710 57286710 A G ZIM2 Silent p.T310T 0.46 TCGA-CK-5915-01 19 7542053 7542053 G T PEX11G 3'UTR 0.47 TCGA-CK-5915-01 1 102270111 102270111 G T OLFM3 Missense_Mutation p.L354I 0.57 deleterious(0.03) benign(0.019) TCGA-CK-5915-01 1 12820963 12820963 C T C1orf158 3'UTR 0.62 TCGA-CK-5915-01 1 145075758 145075758 G A PDE4DIP Silent p.D35D 0.11 TCGA-CK-5915-01 1 153534020 153534020 A C S100A2 Missense_Mutation p.D63E 0.27 deleterious(0) probably_damaging(0.987) TCGA-CK-5915-01 1 183938581 183938581 G A COLGALT2 Silent p.Y218Y 0.63 TCGA-CK-5915-01 1 203681241 203681241 C T ATP2B4 Missense_Mutation p.R729W 0.17 deleterious(0) possibly_damaging(0.843) TCGA-CK-5915-01 1 220091846 220091846 A G SLC30A10 Intron 0.08 TCGA-CK-5915-01 1 222803066 222803066 A G MIA3 Missense_Mutation p.K835R 0.32 tolerated(0.19) benign(0.115) TCGA-CK-5915-01 1 27023501 27023502 - A ARID1A Frame_Shift_Ins p.H203Qfs*197 0.64 TCGA-CK-5915-01 1 43777418 43777418 G A TIE1 Silent p.S470S 0.29 TCGA-CK-5915-01 1 46089254 46089254 G A CCDC17 Missense_Mutation p.S82F 0.58 tolerated(0.7) possibly_damaging(0.767) TCGA-CK-5915-01 1 94041639 94041639 C A BCAR3 Silent p.G578G 0.25 TCGA-CK-5915-01 20 17208109 17208109 C T PCSK2 Silent p.H53H 0.67 TCGA-CK-5915-01 20 19981589 19981589 C T RIN2 3'UTR 0.37 TCGA-CK-5915-01 20 35545436 35545436 C T SAMHD1 Missense_Mutation p.R290H 0.30 deleterious(0) probably_damaging(0.981) TCGA-CK-5915-01 20 36560073 36560073 G A VSTM2L Missense_Mutation p.R53Q 0.42 tolerated(0.53) benign(0.121) TCGA-CK-5915-01 20 36572574 36572574 C T VSTM2L Silent p.P178P 0.43 TCGA-CK-5915-01 20 428681 428681 T C TBC1D20 Missense_Mutation p.I36M 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5915-01 20 61525830 61525830 A G DIDO1 Missense_Mutation p.M836T 0.63 probably_damaging(0.989) TCGA-CK-5915-01 21 47986480 47986480 C T DIP2A Silent p.H1449H 0.45 TCGA-CK-5915-01 22 21107404 21107404 C T PI4KA Silent p.A952A 0.24 TCGA-CK-5915-01 22 28503113 28503113 G A TTC28 Missense_Mutation p.A907V 0.55 deleterious(0) probably_damaging(0.981) TCGA-CK-5915-01 22 32109605 32109605 C T PRR14L Missense_Mutation p.R1407H 0.30 tolerated(1) benign(0) TCGA-CK-5915-01 22 39884018 39884018 C T MGAT3 Silent p.D222D 0.22 TCGA-CK-5915-01 22 42377668 42377668 G A SEPT3 Silent p.T10T 0.23 TCGA-CK-5915-01 2 10584354 10584354 C A ODC1 Nonsense_Mutation p.E106* 0.42 TCGA-CK-5915-01 2 152468796 152468796 C T NEB Silent p.R3903R 0.41 TCGA-CK-5915-01 2 202483770 202483770 C T ALS2CR11 Silent p.P28P 0.54 TCGA-CK-5915-01 2 211163222 211163222 C T MYL1 Missense_Mutation p.G76S 0.51 deleterious(0.01) probably_damaging(0.943) TCGA-CK-5915-01 2 228137793 228137793 G A COL4A3 Silent p.T629T 0.54 TCGA-CK-5915-01 2 239039042 239039042 G T ESPNL Missense_Mutation p.V563F 0.25 deleterious_low_confidence(0.04) benign(0.052) TCGA-CK-5915-01 2 25475163 25475163 C T DNMT3A Intron 0.31 TCGA-CK-5915-01 2 46988416 46988416 G A SOCS5 3'UTR 0.39 TCGA-CK-5915-01 3 110837776 110837776 A G PVRL3 Missense_Mutation p.Y259C 0.41 deleterious(0.02) possibly_damaging(0.628) TCGA-CK-5915-01 3 12475700 12475700 G A PPARG 3'UTR 0.23 TCGA-CK-5915-01 3 137799444 137799444 T A DZIP1L Missense_Mutation p.K418M 0.54 deleterious(0.01) possibly_damaging(0.838) TCGA-CK-5915-01 3 179316455 179316465 ATCCTTACCTT - MRPL47 Splice_Site p.X134_splice 0.38 TCGA-CK-5915-01 3 195513218 195513218 G C MUC4 Missense_Mutation p.L1745V 0.20 possibly_damaging(0.488) TCGA-CK-5915-01 3 25686831 25686831 C T TOP2B Missense_Mutation p.R62H 0.24 deleterious(0) probably_damaging(1) TCGA-CK-5915-01 3 38592624 38592624 C T SCN5A Missense_Mutation p.V1747M 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-CK-5915-01 3 47061325 47061325 C T SETD2 Silent p.S2452S 0.46 TCGA-CK-5915-01 3 48475350 48475350 A G CCDC51 Intron 0.43 TCGA-CK-5915-01 3 51392325 51392325 G T DOCK3 Missense_Mutation p.V1374L 0.59 deleterious(0.03) benign(0.012) TCGA-CK-5915-01 4 100260871 100260871 G A ADH1C Silent p.G322G 0.58 TCGA-CK-5915-01 4 37903672 37903672 A G TBC1D1 5'UTR 0.28 TCGA-CK-5915-01 4 70352409 70352409 C T UGT2B4 Silent p.L336L 0.27 TCGA-CK-5915-01 5 110079474 110079474 C T SLC25A46 Missense_Mutation p.R124C 0.29 deleterious(0) probably_damaging(1) TCGA-CK-5915-01 5 112155042 112155042 G C APC Splice_Site p.X438_splice 0.88 TCGA-CK-5915-01 5 131977952 131977952 C T RAD50 Missense_Mutation p.R1279C 0.90 deleterious(0) probably_damaging(0.999) TCGA-CK-5915-01 5 140554409 140554409 G A PCDHB7 Missense_Mutation p.G665S 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-CK-5915-01 5 140590591 140590591 G A PCDHB12 Silent p.S704S 0.21 TCGA-CK-5915-01 5 140625165 140625165 C T PCDHB15 Missense_Mutation p.R7C 0.20 tolerated_low_confidence(0.14) benign(0.011) TCGA-CK-5915-01 5 150925017 150925017 G T FAT2 Missense_Mutation p.L1891I 0.33 benign(0.348) TCGA-CK-5915-01 5 70808246 70808246 T A BDP1 Missense_Mutation p.I1413N 0.24 tolerated(0.1) benign(0.006) TCGA-CK-5915-01 6 139487814 139487815 - A HECA Frame_Shift_Ins p.C225Vfs*6 0.40 TCGA-CK-5915-01 6 31548502 31548502 G A LTB Missense_Mutation p.A240V 0.20 deleterious(0) probably_damaging(0.995) TCGA-CK-5915-01 6 32032853 32032853 G A TNXB Missense_Mutation p.R2196C 0.63 possibly_damaging(0.899) TCGA-CK-5915-01 6 43030781 43030781 C T KLC4 Missense_Mutation p.R147W 0.62 deleterious(0) probably_damaging(0.965) TCGA-CK-5915-01 6 57013143 57013143 C T ZNF451 Missense_Mutation p.R754C 0.31 deleterious(0.03) benign(0.141) TCGA-CK-5915-01 6 74104612 74104612 C T DDX43 5'UTR 0.44 TCGA-CK-5915-01 7 106508093 106508093 G A PIK3CG Silent p.A29A 0.48 TCGA-CK-5915-01 7 106508173 106508173 C T PIK3CG Missense_Mutation p.T56M 0.58 tolerated(0.05) benign(0.013) TCGA-CK-5915-01 7 122839982 122839982 T A SLC13A1 Missense_Mutation p.I7F 0.48 deleterious(0.04) benign(0.085) TCGA-CK-5915-01 7 134363860 134363860 C A BPGM 3'UTR 0.40 TCGA-CK-5915-01 7 73119387 73119387 C T STX1A Intron 0.27 TCGA-CK-5915-01 7 98257795 98257795 C T NPTX2 Missense_Mutation p.R384C 0.57 deleterious(0.01) possibly_damaging(0.901) TCGA-CK-5915-01 8 117784036 117784036 T G UTP23 Silent p.S235S 0.42 TCGA-CK-5915-01 8 12882404 12882404 C T KIAA1456 3'UTR 0.41 TCGA-CK-5915-01 8 13948053 13948053 C G SGCZ Missense_Mutation p.V280L 0.25 tolerated(0.85) benign(0.088) TCGA-CK-5915-01 8 51415387 51415387 T G SNTG1 Missense_Mutation p.F138C 0.47 deleterious(0) probably_damaging(0.94) TCGA-CK-5915-01 8 53568774 53568775 - T RB1CC1 Nonsense_Mutation p.Y1205* 0.29 TCGA-CK-5915-01 9 112042174 112042174 C T EPB41L4B Missense_Mutation p.D112N 0.67 deleterious(0.01) probably_damaging(1) TCGA-CK-5915-01 9 113265469 113265469 C T SVEP1 Silent p.P444P 0.30 TCGA-CK-5915-01 9 127265588 127265588 C T NR5A1 Silent p.T29T 0.33 TCGA-CK-5915-01 9 130164926 130164926 C T SLC2A8 Missense_Mutation p.P206L 0.60 deleterious(0) probably_damaging(0.999) TCGA-CK-5915-01 9 3257113 3257113 G A RFX3 Silent p.S564S 0.62 TCGA-CK-5915-01 9 34834814 34834814 C G FAM205B RNA 0.22 TCGA-CK-5915-01 X 112066060 112066060 G A AMOT Nonsense_Mutation p.R99* 0.94 TCGA-CK-5915-01 X 149924177 149924177 C T MTMR1 Missense_Mutation p.T558M 0.93 deleterious(0) probably_damaging(0.987) TCGA-CK-5915-01 X 34148956 34148956 C T FAM47A Silent p.P480P 0.93 TCGA-CK-5916-01 10 100182145 100182145 G A HPS1 Missense_Mutation p.A575V 0.16 deleterious(0) probably_damaging(0.911) TCGA-CK-5916-01 10 101293194 101293194 C T NKX2-3 Silent p.S102S 0.40 TCGA-CK-5916-01 10 101370995 101370995 C T SLC25A28 Missense_Mutation p.V236I 0.28 tolerated(0.78) benign(0.029) TCGA-CK-5916-01 10 101373472 101373472 G A SLC25A28 Silent p.G167G 0.23 TCGA-CK-5916-01 10 101458455 101458455 G A ENTPD7 Missense_Mutation p.R392H 0.35 tolerated(0.09) possibly_damaging(0.86) TCGA-CK-5916-01 10 101507041 101507041 C A CUTC Missense_Mutation p.A156E 0.31 tolerated(1) benign(0.001) TCGA-CK-5916-01 10 101544462 101544462 C - ABCC2 Frame_Shift_Del p.W46Gfs*33 0.34 TCGA-CK-5916-01 10 101716590 101716590 G A DNMBP Missense_Mutation p.S214F 0.27 deleterious(0.02) benign(0.008) TCGA-CK-5916-01 10 101953110 101953110 G T CHUK Missense_Mutation p.P685T 0.30 tolerated(0.05) benign(0.001) TCGA-CK-5916-01 10 102584698 102584698 C T PAX2 Intron 0.26 TCGA-CK-5916-01 10 102782123 102782123 G A PDZD7 Missense_Mutation p.R188C 0.42 deleterious(0) probably_damaging(0.993) TCGA-CK-5916-01 10 102894086 102894086 C A TLX1 Silent p.T241T 0.23 TCGA-CK-5916-01 10 104140425 104140425 A G GBF1 Missense_Mutation p.K1718E 0.36 deleterious(0.01) possibly_damaging(0.49) TCGA-CK-5916-01 10 104175781 104175781 G - PSD Frame_Shift_Del p.S251Afs*43 0.35 TCGA-CK-5916-01 10 104182754 104182754 G A FBXL15 3'UTR 0.25 TCGA-CK-5916-01 10 105183387 105183387 A G PDCD11 Missense_Mutation p.Q912R 0.32 tolerated(0.33) benign(0.001) TCGA-CK-5916-01 10 105967558 105967558 G T WDR96 Missense_Mutation p.L254I 0.36 tolerated(0.06) benign(0.152) TCGA-CK-5916-01 10 106401518 106401518 G A SORCS3 Missense_Mutation p.A145T 0.38 tolerated(0.24) benign(0.001) TCGA-CK-5916-01 10 116049280 116049280 C - VWA2 Frame_Shift_Del p.H720Mfs*13 0.28 TCGA-CK-5916-01 10 118891601 118891601 C T VAX1 3'Flank 0.40 TCGA-CK-5916-01 10 12077223 12077223 T - UPF2 Frame_Shift_Del p.K67Rfs*14 0.23 TCGA-CK-5916-01 10 123239116 123239116 G A FGFR2 3'Flank 0.33 TCGA-CK-5916-01 10 124753659 124753659 G A IKZF5 Silent p.A299A 0.32 TCGA-CK-5916-01 10 124920038 124920038 T C BUB3 Missense_Mutation p.L178P 0.27 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 10 126186626 126186626 G A LHPP Missense_Mutation p.E185K 0.30 tolerated(0.15) benign(0.043) TCGA-CK-5916-01 10 126205781 126205781 C T LHPP Silent p.D219D 0.33 TCGA-CK-5916-01 10 127429208 127429208 T C EDRF1 Silent p.L720L 0.33 TCGA-CK-5916-01 10 128193331 128193331 G A C10orf90 Silent p.R146R 0.36 TCGA-CK-5916-01 10 128974520 128974520 A G FAM196A Missense_Mutation p.V47A 0.36 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 10 131671750 131671750 C T EBF3 Silent p.P249P 0.24 TCGA-CK-5916-01 10 13276216 13276216 C T UCMA Missense_Mutation p.V15M 0.14 tolerated(0.11) benign(0.049) TCGA-CK-5916-01 10 133769478 133769478 G A PPP2R2D 3'UTR 0.28 TCGA-CK-5916-01 10 134158106 134158106 C T LRRC27 Missense_Mutation p.R169W 0.28 deleterious(0) benign(0.336) TCGA-CK-5916-01 10 135038196 135038196 G A KNDC1 Silent p.A1684A 0.27 TCGA-CK-5916-01 10 135038283 135038283 C T KNDC1 Silent p.D1713D 0.27 TCGA-CK-5916-01 10 135053761 135053761 C T VENTX Missense_Mutation p.T243M 0.14 tolerated_low_confidence(0.27) benign(0.004) TCGA-CK-5916-01 10 135107141 135107141 G T TUBGCP2 Missense_Mutation p.P278H 0.38 deleterious(0.01) probably_damaging(0.919) TCGA-CK-5916-01 10 17087124 17087124 T C CUBN Missense_Mutation p.Y1185C 0.27 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 10 23235176 23235176 A C ARMC3 Missense_Mutation p.K51T 0.21 tolerated(0.13) benign(0.051) TCGA-CK-5916-01 10 23730165 23730166 - T OTUD1 3'UTR 0.23 TCGA-CK-5916-01 10 25887977 25887977 A - GPR158 Frame_Shift_Del p.K1143Rfs*23 0.25 TCGA-CK-5916-01 10 27048160 27048160 C T ABI1 Silent p.P303P 0.32 TCGA-CK-5916-01 10 27324090 27324090 C A ANKRD26 Missense_Mutation p.V1097L 0.31 tolerated(0.11) benign(0.033) TCGA-CK-5916-01 10 27389022 27389022 C A ANKRD26 Missense_Mutation p.K78N 0.33 deleterious(0.03) possibly_damaging(0.467) TCGA-CK-5916-01 10 27702866 27702866 G A PTCHD3 Missense_Mutation p.T105M 0.26 tolerated(0.11) benign(0.035) TCGA-CK-5916-01 10 29759389 29759389 G A SVIL Missense_Mutation p.R1887C 0.29 deleterious(0) probably_damaging(0.987) TCGA-CK-5916-01 10 31134047 31134047 T C ZNF438 Missense_Mutation p.N777S 0.25 tolerated(0.09) benign(0.11) TCGA-CK-5916-01 10 3186069 3186069 T C PITRM1 Intron 0.36 TCGA-CK-5916-01 10 33217081 33217081 T G ITGB1 Missense_Mutation p.K163T 0.26 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 10 35324100 35324100 G A CUL2 Silent p.N353N 0.34 TCGA-CK-5916-01 10 46111949 46111949 C T ZFAND4 Missense_Mutation p.A707T 0.31 tolerated(0.14) benign(0.225) TCGA-CK-5916-01 10 47000596 47000596 C T GPRIN2 3'UTR 0.19 TCGA-CK-5916-01 10 50184973 50184973 A G WDFY4 Silent p.A3080A 0.27 TCGA-CK-5916-01 10 50863468 50863468 C T CHAT Missense_Mutation p.R605C 0.31 tolerated(0.1) benign(0.013) TCGA-CK-5916-01 10 50952788 50952788 G A OGDHL Missense_Mutation p.A547V 0.35 tolerated(0.14) possibly_damaging(0.493) TCGA-CK-5916-01 10 50957849 50957849 C T OGDHL Missense_Mutation p.V304M 0.32 tolerated(0.08) probably_damaging(0.954) TCGA-CK-5916-01 10 51579234 51579234 T C NCOA4 Silent p.I47I 0.29 TCGA-CK-5916-01 10 51768992 51768992 C T AGAP6 Silent p.T369T 0.24 TCGA-CK-5916-01 10 52103404 52103404 G A SGMS1 Silent p.H157H 0.34 TCGA-CK-5916-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.21 TCGA-CK-5916-01 10 61846555 61846555 G A ANK3 Missense_Mutation p.R1210W 0.26 probably_damaging(0.999) TCGA-CK-5916-01 10 63520670 63520670 C T C10orf107 Missense_Mutation p.T154I 0.29 tolerated(0.07) benign(0.002) TCGA-CK-5916-01 10 68139048 68139048 T C CTNNA3 Missense_Mutation p.N532D 0.30 tolerated(0.63) unknown(0) TCGA-CK-5916-01 10 69934049 69934049 G T MYPN Missense_Mutation p.A734S 0.43 tolerated(0.41) benign(0.002) TCGA-CK-5916-01 10 70043844 70043844 C T PBLD 3'UTR 0.35 TCGA-CK-5916-01 10 71332719 71332719 G A NEUROG3 Silent p.D27D 0.29 TCGA-CK-5916-01 10 72324246 72324246 C T PALD1 Nonsense_Mutation p.Q797* 0.26 TCGA-CK-5916-01 10 72358049 72358049 C - PRF1 Frame_Shift_Del p.L478* 0.28 TCGA-CK-5916-01 10 72541682 72541682 C T TBATA Missense_Mutation p.R51Q 0.35 tolerated(0.56) benign(0.003) TCGA-CK-5916-01 10 74631198 74631198 G A MCU Missense_Mutation p.A241T 0.35 deleterious(0) probably_damaging(0.978) TCGA-CK-5916-01 10 74874160 74874160 T - NUDT13 Frame_Shift_Del p.W15Gfs*19 0.26 TCGA-CK-5916-01 10 75005823 75005823 T C DNAJC9 Missense_Mutation p.M145V 0.31 tolerated(0.18) benign(0.081) TCGA-CK-5916-01 10 75255558 75255558 C A PPP3CB Intron 0.46 TCGA-CK-5916-01 10 76868799 76868799 G A DUSP13 Silent p.D39D 0.31 TCGA-CK-5916-01 10 79581660 79581660 G - DLG5 Frame_Shift_Del p.P861Qfs*32 0.31 TCGA-CK-5916-01 10 79589179 79589179 G A DLG5 Missense_Mutation p.R707W 0.33 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 10 79795341 79795341 T A RPS24 Missense_Mutation p.Y48N 0.42 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CK-5916-01 10 79814433 79814433 T C RPS24 Missense_Mutation p.C179R 0.32 deleterious_low_confidence(0) unknown(0) TCGA-CK-5916-01 10 82298051 82298051 T C SH2D4B 5'UTR 0.30 TCGA-CK-5916-01 10 88988343 88988343 G A NUTM2A Missense_Mutation p.A236T 0.17 tolerated(0.17) benign(0.038) TCGA-CK-5916-01 10 89552478 89552478 T - ATAD1 Frame_Shift_Del p.N66Mfs*2 0.21 TCGA-CK-5916-01 10 91162209 91162209 C T IFIT1 Silent p.A59A 0.21 TCGA-CK-5916-01 10 93572925 93572925 C T TNKS2 Missense_Mutation p.H129Y 0.29 deleterious(0) probably_damaging(0.957) TCGA-CK-5916-01 10 93753476 93753476 G A BTAF1 Missense_Mutation p.R1024Q 0.27 deleterious(0) probably_damaging(0.97) TCGA-CK-5916-01 10 94813 94813 C T TUBB8 Missense_Mutation p.A33T 0.37 tolerated_low_confidence(1) benign(0.005) TCGA-CK-5916-01 10 95072920 95072920 G A MYOF Missense_Mutation p.P1916S 0.25 tolerated(0.37) benign(0.005) TCGA-CK-5916-01 10 98745013 98745013 G A C10orf12 3'UTR 0.32 TCGA-CK-5916-01 10 98761090 98761090 C - SLIT1 Frame_Shift_Del p.D1462Tfs*42 0.21 TCGA-CK-5916-01 10 99330109 99330109 G T UBTD1 Silent p.V171V 0.26 TCGA-CK-5916-01 10 99625149 99625149 G A CRTAC1 3'UTR 0.20 TCGA-CK-5916-01 11 1000475 1000475 C - AP2A2 Frame_Shift_Del p.P669Lfs*67 0.29 TCGA-CK-5916-01 11 100998779 100998779 C T PGR Silent p.P341P 0.21 TCGA-CK-5916-01 11 101323539 101323539 A G TRPC6 3'UTR 0.32 TCGA-CK-5916-01 11 10580681 10580681 G A LYVE1 Nonsense_Mutation p.R316* 0.30 TCGA-CK-5916-01 11 1097335 1097335 C T MUC2 Missense_Mutation p.R2251W 0.24 unknown(0) TCGA-CK-5916-01 11 110135561 110135561 A - RDX Frame_Shift_Del p.F45Lfs*6 0.16 TCGA-CK-5916-01 11 111167431 111167431 A - COLCA1 5'UTR 0.25 TCGA-CK-5916-01 11 111583041 111583041 C T SIK2 Missense_Mutation p.A403V 0.34 tolerated(0.29) benign(0.013) TCGA-CK-5916-01 11 113195399 113195399 C T TTC12 Missense_Mutation p.A106V 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 11 113270627 113270627 C T ANKK1 Silent p.L646L 0.43 TCGA-CK-5916-01 11 113661160 113661160 G A ATF4P4 RNA 0.30 TCGA-CK-5916-01 11 117162428 117162428 G A BACE1 Silent p.S314S 0.28 TCGA-CK-5916-01 11 117164628 117164628 G - BACE1 Frame_Shift_Del p.L222Sfs*14 0.28 TCGA-CK-5916-01 11 118074235 118074235 G A AMICA1 Missense_Mutation p.S227L 0.31 tolerated(0.06) probably_damaging(0.992) TCGA-CK-5916-01 11 118530097 118530097 G A TREH Nonsense_Mutation p.Q472* 0.43 TCGA-CK-5916-01 11 118919004 118919004 C T HYOU1 Missense_Mutation p.A778T 0.35 tolerated(0.25) benign(0.013) TCGA-CK-5916-01 11 118942531 118942531 C A VPS11 Missense_Mutation p.R287S 0.30 tolerated(0.1) benign(0.012) TCGA-CK-5916-01 11 118965857 118965857 T C H2AFX Missense_Mutation p.H83R 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-5916-01 11 121028656 121028656 C T TECTA Missense_Mutation p.A1471V 0.35 tolerated(0.22) benign(0.028) TCGA-CK-5916-01 11 12281548 12281548 T C MICAL2 Intron 0.27 TCGA-CK-5916-01 11 123396829 123396829 C T GRAMD1B 5'UTR 0.32 TCGA-CK-5916-01 11 123847486 123847486 G A OR10S1 Missense_Mutation p.R305W 0.29 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 11 123909178 123909178 G C OR10G7 Missense_Mutation p.F177L 0.23 deleterious(0.04) benign(0.008) TCGA-CK-5916-01 11 123909181 123909181 G A OR10G7 Silent p.Y176Y 0.23 TCGA-CK-5916-01 11 124739423 124739423 C - ROBO3 Frame_Shift_Del p.R191Afs*31 0.36 TCGA-CK-5916-01 11 124792285 124792285 T - HEPACAM Frame_Shift_Del p.K316Rfs*87 0.24 TCGA-CK-5916-01 11 124793743 124793743 G - HEPACAM Frame_Shift_Del p.D198Tfs*57 0.24 TCGA-CK-5916-01 11 125547692 125547692 C A ACRV1 Missense_Mutation p.G185C 0.30 deleterious(0) probably_damaging(0.967) TCGA-CK-5916-01 11 125660584 125660584 G A PATE3 3'UTR 0.35 TCGA-CK-5916-01 11 126299156 126299156 T - KIRREL3 Frame_Shift_Del p.N575Mfs*27 0.28 TCGA-CK-5916-01 11 1264861 1264861 G A MUC5B Missense_Mutation p.A2251T 0.31 benign(0.341) TCGA-CK-5916-01 11 130275458 130275458 G A ADAMTS8 Silent p.L889L 0.17 TCGA-CK-5916-01 11 130785684 130785684 G A SNX19 Silent p.L51L 0.20 TCGA-CK-5916-01 11 131240692 131240692 A - NTM 5'UTR 0.20 TCGA-CK-5916-01 11 131781322 131781322 G - NTM 5'Flank 0.19 TCGA-CK-5916-01 11 14287285 14287285 G A RP11-21L19.1 Intron 0.22 TCGA-CK-5916-01 11 1482233 1482233 C T BRSK2 3'UTR 0.30 TCGA-CK-5916-01 11 16068213 16068213 A - SOX6 Frame_Shift_Del p.F490Lfs*7 0.26 TCGA-CK-5916-01 11 17158163 17158163 G A PIK3C2A Nonsense_Mutation p.R572* 0.31 TCGA-CK-5916-01 11 17409113 17409113 G A KCNJ11 Missense_Mutation p.R176C 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 11 18380107 18380107 C T GTF2H1 Missense_Mutation p.H463Y 0.29 deleterious(0.03) benign(0.438) TCGA-CK-5916-01 11 18478280 18478280 T C LDHAL6A Missense_Mutation p.I18T 0.26 tolerated(0.78) benign(0.001) TCGA-CK-5916-01 11 18636626 18636626 G A SPTY2D1 Missense_Mutation p.R399C 0.40 tolerated(0.07) possibly_damaging(0.876) TCGA-CK-5916-01 11 193080 193080 C T SCGB1C1 5'UTR 0.33 TCGA-CK-5916-01 11 198474 198474 G A ODF3 Silent p.A141A 0.28 TCGA-CK-5916-01 11 20178162 20178162 C T DBX1 Silent p.L249L 0.37 TCGA-CK-5916-01 11 2182136 2182136 G A INS-IGF2 Silent p.A22A 0.32 TCGA-CK-5916-01 11 22283791 22283791 G A ANO5 Missense_Mutation p.V583I 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5916-01 11 26587214 26587214 G A MUC15 Silent p.T91T 0.29 TCGA-CK-5916-01 11 281834 281834 C T NLRP6 Silent p.G700G 0.40 TCGA-CK-5916-01 11 3111816 3111816 G A OSBPL5 Silent p.D790D 0.25 TCGA-CK-5916-01 11 3123436 3123436 G A OSBPL5 Missense_Mutation p.R468C 0.28 tolerated(0.29) benign(0.005) TCGA-CK-5916-01 11 32636280 32636280 A G CCDC73 Silent p.C528C 0.27 TCGA-CK-5916-01 11 34378341 34378341 C T ABTB2 Missense_Mutation p.A264T 0.29 tolerated(0.27) benign(0.004) TCGA-CK-5916-01 11 34493186 34493186 A - CAT 3'UTR 0.40 TCGA-CK-5916-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.18 TCGA-CK-5916-01 11 3846723 3846723 T C PGAP2 3'UTR 0.19 TCGA-CK-5916-01 11 40135971 40135971 C T LRRC4C Silent p.P624P 0.31 TCGA-CK-5916-01 11 43345007 43345007 T G API5 Missense_Mutation p.F191V 0.34 deleterious(0) probably_damaging(0.994) TCGA-CK-5916-01 11 45955607 45955607 G - PHF21A Frame_Shift_Del p.P652Lfs*104 0.36 TCGA-CK-5916-01 11 4626759 4626759 A T TRIM68 5'UTR 0.22 TCGA-CK-5916-01 11 46406713 46406713 C T CHRM4 Silent p.R465R 0.32 TCGA-CK-5916-01 11 46564499 46564499 C T AMBRA1 Silent p.S266S 0.29 TCGA-CK-5916-01 11 47267382 47267382 A G ACP2 Missense_Mutation p.Y101H 0.32 deleterious(0.01) probably_damaging(0.97) TCGA-CK-5916-01 11 47311504 47311504 G A MADD Missense_Mutation p.R968Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-CK-5916-01 11 47353621 47353621 A G MYBPC3 Splice_Site p.X1272_splice 0.41 TCGA-CK-5916-01 11 47359316 47359316 T C MYBPC3 Missense_Mutation p.I780V 0.16 tolerated(0.85) benign(0.077) TCGA-CK-5916-01 11 47360200 47360200 C T MYBPC3 Missense_Mutation p.V727M 0.30 deleterious(0.02) probably_damaging(0.995) TCGA-CK-5916-01 11 47369447 47369447 C - MYBPC3 Frame_Shift_Del p.G261Afs*39 0.38 TCGA-CK-5916-01 11 47440460 47440460 T C PSMC3 Missense_Mutation p.T416A 0.15 tolerated(0.29) benign(0) TCGA-CK-5916-01 11 51515857 51515857 G A OR4C46 Missense_Mutation p.M192I 0.31 tolerated_low_confidence(1) benign(0) TCGA-CK-5916-01 11 55322703 55322703 C T OR4C15 Silent p.C307C 0.30 TCGA-CK-5916-01 11 55322770 55322770 A G OR4C15 Missense_Mutation p.I330V 0.33 tolerated_low_confidence(0.37) benign(0.078) TCGA-CK-5916-01 11 558069 558069 G - C11orf35 Intron 0.20 TCGA-CK-5916-01 11 5602430 5602430 T A OR52B6 Silent p.G108G 0.29 TCGA-CK-5916-01 11 5625762 5625764 AGG - TRIM6 Splice_Site p.X170_splice 0.25 TCGA-CK-5916-01 11 61503059 61503059 G A DAGLA Silent p.A385A 0.44 TCGA-CK-5916-01 11 61564657 61564657 G A FEN1 3'UTR 0.33 TCGA-CK-5916-01 11 61646237 61646237 A G FADS3 Missense_Mutation p.F202S 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 11 62378798 62378799 - C EML3 Frame_Shift_Ins p.L72Tfs*46 0.26 TCGA-CK-5916-01 11 62457960 62457960 G A BSCL2 Missense_Mutation p.T423M 0.35 tolerated_low_confidence(0.17) benign(0.134) TCGA-CK-5916-01 11 62561751 62561751 A G NXF1 Missense_Mutation p.M580T 0.28 deleterious(0) probably_damaging(0.927) TCGA-CK-5916-01 11 62598585 62598585 G - STX5 Frame_Shift_Del p.P44Qfs*2 0.26 TCGA-CK-5916-01 11 62847451 62847451 T C SLC22A24 Missense_Mutation p.I539M 0.16 deleterious(0.04) benign(0.003) TCGA-CK-5916-01 11 639492 639492 C T DRD4 Silent p.D115D 0.20 TCGA-CK-5916-01 11 64031564 64031564 G A PLCB3 Missense_Mutation p.A878T 0.34 deleterious(0.01) benign(0.046) TCGA-CK-5916-01 11 64054213 64054213 C T GPR137 Missense_Mutation p.R131C 0.30 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 11 64136147 64136147 A T RPS6KA4 Intron 0.44 TCGA-CK-5916-01 11 6416645 6416645 G A APBB1 3'UTR 0.34 TCGA-CK-5916-01 11 64419520 64419520 G A NRXN2 Silent p.N841N 0.40 TCGA-CK-5916-01 11 64535625 64535625 C T SF1 Missense_Mutation p.A466T 0.37 tolerated(0.09) benign(0.071) TCGA-CK-5916-01 11 64799925 64799925 G A SNX15 Missense_Mutation p.S53N 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-CK-5916-01 11 64815139 64815139 C T NAALADL1 Silent p.P496P 0.31 TCGA-CK-5916-01 11 64877368 64877370 GGA - VPS51 In_Frame_Del p.E618del 0.32 TCGA-CK-5916-01 11 64898135 64898136 - G SYVN1 Frame_Shift_Ins p.N368Qfs*129 0.20 TCGA-CK-5916-01 11 64978827 64978827 C T CAPN1 3'UTR 0.21 TCGA-CK-5916-01 11 65178835 65178835 C T FRMD8 3'UTR 0.24 TCGA-CK-5916-01 11 65305557 65305557 C T SCYL1 Silent p.D717D 0.47 TCGA-CK-5916-01 11 65412557 65412557 G T SIPA1 Silent p.R372R 0.37 TCGA-CK-5916-01 11 65421781 65421781 C T RELA 3'UTR 0.18 TCGA-CK-5916-01 11 65429479 65429479 C T RELA Missense_Mutation p.E39K 0.30 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 11 6549999 6549999 A G DNHD1 Missense_Mutation p.I695M 0.12 benign(0.008) TCGA-CK-5916-01 11 65810744 65810744 T C GAL3ST3 Missense_Mutation p.N177S 0.14 tolerated(0.23) possibly_damaging(0.9) TCGA-CK-5916-01 11 65810870 65810870 G A GAL3ST3 Missense_Mutation p.A135V 0.40 deleterious(0.04) benign(0.353) TCGA-CK-5916-01 11 66051052 66051052 C T CNIH2 Missense_Mutation p.T156M 0.30 deleterious(0.01) possibly_damaging(0.74) TCGA-CK-5916-01 11 66113699 66113699 G A B3GNT1 Missense_Mutation p.H357Y 0.25 deleterious(0) benign(0.336) TCGA-CK-5916-01 11 66358077 66358077 G A CCDC87 Missense_Mutation p.P804S 0.38 tolerated(0.45) benign(0) TCGA-CK-5916-01 11 66393035 66393036 - G RBM14 Frame_Shift_Ins p.A565Gfs*13 0.40 TCGA-CK-5916-01 11 66411058 66411058 G A RBM14-RBM4 Missense_Mutation p.A159T 0.43 tolerated(0.53) benign(0.034) TCGA-CK-5916-01 11 66625484 66625484 G A LRFN4 Missense_Mutation p.R90H 0.30 tolerated(0.56) benign(0.028) TCGA-CK-5916-01 11 67119270 67119270 C T POLD4 3'UTR 0.40 TCGA-CK-5916-01 11 67208480 67208480 C T CORO1B Intron 0.17 TCGA-CK-5916-01 11 67219164 67219164 C T GPR152 Silent p.P344P 0.33 TCGA-CK-5916-01 11 68549273 68549273 C T CPT1A Missense_Mutation p.A440T 0.33 deleterious(0) possibly_damaging(0.686) TCGA-CK-5916-01 11 70189805 70189805 C T PPFIA1 Missense_Mutation p.R580C 0.39 deleterious(0) probably_damaging(0.91) TCGA-CK-5916-01 11 70332303 70332303 G A SHANK2 Silent p.P1366P 0.41 TCGA-CK-5916-01 11 7111071 7111071 C T RBMXL2 Silent p.H240H 0.47 TCGA-CK-5916-01 11 71943704 71943704 C T INPPL1 Missense_Mutation p.L583F 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 11 72406454 72406454 G A ARAP1 Missense_Mutation p.A1185V 0.27 tolerated(0.07) benign(0.008) TCGA-CK-5916-01 11 72945906 72945906 C T P2RY2 Silent p.G234G 0.46 TCGA-CK-5916-01 11 73371839 73371840 - C PLEKHB1 Frame_Shift_Ins p.N182Qfs*102 0.21 TCGA-CK-5916-01 11 7506992 7506992 T - OLFML1 5'UTR 0.28 TCGA-CK-5916-01 11 76062466 76062466 T C PRKRIR Silent p.E576E 0.33 TCGA-CK-5916-01 11 76893122 76893122 G A MYO7A Silent p.Q1010Q 0.24 TCGA-CK-5916-01 11 77602765 77602765 G A INTS4 Nonsense_Mutation p.R804* 0.30 TCGA-CK-5916-01 11 77774994 77774994 G A THRSP Missense_Mutation p.E23K 0.39 deleterious(0.01) benign(0.084) TCGA-CK-5916-01 11 78380137 78380137 C T TENM4 Missense_Mutation p.R2418Q 0.40 tolerated(1) benign(0.007) TCGA-CK-5916-01 11 792427 792427 G A SLC25A22 Missense_Mutation p.L207F 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-CK-5916-01 11 838010 838010 C T CD151 Silent p.I228I 0.33 TCGA-CK-5916-01 11 83874537 83874537 A G DLG2 Silent p.I197I 0.25 TCGA-CK-5916-01 11 86056518 86056518 T C C11orf73 Intron 0.14 TCGA-CK-5916-01 11 88045646 88045646 C T CTSC Missense_Mutation p.R132Q 0.37 deleterious(0.02) possibly_damaging(0.666) TCGA-CK-5916-01 11 89405144 89405144 G A FOLH1B RNA 0.27 TCGA-CK-5916-01 11 9087525 9087525 G A SCUBE2 Nonsense_Mutation p.R255* 0.35 TCGA-CK-5916-01 11 92590422 92590422 C T FAT3 Missense_Mutation p.P3803L 0.24 benign(0.048) TCGA-CK-5916-01 11 93212108 93212108 T - SMCO4 3'UTR 0.45 TCGA-CK-5916-01 11 93808528 93808528 G T HEPHL1 Missense_Mutation p.V565F 0.32 deleterious(0) benign(0.232) TCGA-CK-5916-01 11 9494303 9494303 A G ZNF143 Silent p.Q64Q 0.30 TCGA-CK-5916-01 11 95555222 95555222 G C CEP57 Intron 0.27 TCGA-CK-5916-01 11 96104245 96104245 C A CCDC82 Missense_Mutation p.D381Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 12 100452184 100452184 C T UHRF1BP1L Silent p.L957L 0.31 TCGA-CK-5916-01 12 100502214 100502214 G A UHRF1BP1L Missense_Mutation p.P53S 0.29 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 12 1005758 1005758 G C WNK1 Missense_Mutation p.Q2035H 0.34 tolerated(0.39) benign(0.005) TCGA-CK-5916-01 12 10145699 10145699 A G CLEC1B 3'UTR 0.30 TCGA-CK-5916-01 12 10374506 10374506 G A GABARAPL1 3'UTR 0.27 TCGA-CK-5916-01 12 104208740 104208740 C T NT5DC3 Missense_Mutation p.R123Q 0.35 deleterious(0.03) probably_damaging(0.993) TCGA-CK-5916-01 12 104327859 104327859 T C HSP90B1 Silent p.T179T 0.30 TCGA-CK-5916-01 12 10464086 10464087 - A KLRD1 Frame_Shift_Ins p.W65Mfs*14 0.26 TCGA-CK-5916-01 12 107219523 107219523 G A RIC8B Missense_Mutation p.R254H 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.26 TCGA-CK-5916-01 12 108589839 108589839 G A WSCD2 Missense_Mutation p.R77Q 0.30 tolerated(0.34) benign(0.003) TCGA-CK-5916-01 12 109703326 109703326 C T ACACB Nonsense_Mutation p.R2416* 0.18 TCGA-CK-5916-01 12 10978472 10978472 T C TAS2R10 Missense_Mutation p.I133V 0.37 tolerated(0.32) benign(0.002) TCGA-CK-5916-01 12 110236464 110236464 G A TRPV4 Silent p.D369D 0.38 TCGA-CK-5916-01 12 11174483 11174483 T C TAS2R19 Missense_Mutation p.T230A 0.27 deleterious(0.01) benign(0.344) TCGA-CK-5916-01 12 111885939 111885939 C - SH2B3 Frame_Shift_Del p.E523Sfs*25 0.24 TCGA-CK-5916-01 12 112630470 112630470 A G HECTD4 Silent p.C2916C 0.34 TCGA-CK-5916-01 12 113304599 113304599 G A RPH3A Missense_Mutation p.R133H 0.36 deleterious(0) probably_damaging(0.994) TCGA-CK-5916-01 12 113379402 113379402 C A OAS3 Missense_Mutation p.L69I 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-CK-5916-01 12 113537791 113537791 G A RASAL1 Silent p.H788H 0.32 TCGA-CK-5916-01 12 113907132 113907132 G A LHX5 Silent p.C64C 0.40 TCGA-CK-5916-01 12 114352812 114352812 G - RBM19 Frame_Shift_Del p.F841Sfs*18 0.26 TCGA-CK-5916-01 12 11461578 11461578 G A PRB4 Silent p.T113T 0.39 TCGA-CK-5916-01 12 114839638 114839638 C T TBX5 Missense_Mutation p.A79T 0.31 deleterious(0.03) possibly_damaging(0.609) TCGA-CK-5916-01 12 116420289 116420291 TCC - MED13L In_Frame_Del p.E1691del 0.34 TCGA-CK-5916-01 12 12022567 12022567 C T ETV6 Nonsense_Mutation p.Q225* 0.25 TCGA-CK-5916-01 12 120784054 120784054 T C MSI1 Missense_Mutation p.T311A 0.22 tolerated(0.07) benign(0.014) TCGA-CK-5916-01 12 120998588 120998588 C T RNF10 Missense_Mutation p.R343W 0.29 tolerated(0.17) benign(0.008) TCGA-CK-5916-01 12 121746350 121746350 G A ANAPC5 Missense_Mutation p.A734V 0.29 deleterious(0) possibly_damaging(0.802) TCGA-CK-5916-01 12 122656811 122656811 C T IL31 3'UTR 0.38 TCGA-CK-5916-01 12 123201165 123201165 A G HCAR3 Silent p.F40F 0.11 TCGA-CK-5916-01 12 123333393 123333393 C T HIP1R Silent p.D117D 0.36 TCGA-CK-5916-01 12 123345975 123345975 C T HIP1R Missense_Mutation p.R1025W 0.32 deleterious(0.01) benign(0.339) TCGA-CK-5916-01 12 123351707 123351707 G A VPS37B Missense_Mutation p.P272S 0.55 tolerated(0.14) benign(0.196) TCGA-CK-5916-01 12 123355446 123355448 TCT - VPS37B In_Frame_Del p.K91del 0.34 TCGA-CK-5916-01 12 123780460 123780460 C T SBNO1 Missense_Mutation p.A1393T 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.835) TCGA-CK-5916-01 12 123957172 123957172 G A RILPL1 Silent p.H375H 0.29 TCGA-CK-5916-01 12 124428744 124428744 G A CCDC92 Intron 0.24 TCGA-CK-5916-01 12 124831287 124831287 G A NCOR2 Silent p.T1394T 0.29 TCGA-CK-5916-01 12 126139370 126139370 G A TMEM132B 3'UTR 0.40 TCGA-CK-5916-01 12 131360268 131360268 G A RAN Missense_Mutation p.A183T 0.30 tolerated(0.16) benign(0.147) TCGA-CK-5916-01 12 131360542 131360542 C T RAN 3'UTR 0.30 TCGA-CK-5916-01 12 13233708 13233708 G A KIAA1467 3'UTR 0.37 TCGA-CK-5916-01 12 132497592 132497592 G A EP400 Silent p.T1160T 0.40 TCGA-CK-5916-01 12 132498407 132498407 G A EP400 Missense_Mutation p.R1291H 0.35 unknown(0) TCGA-CK-5916-01 12 132530382 132530382 C T EP400 Silent p.Y2379Y 0.28 TCGA-CK-5916-01 12 132611125 132611125 G A RP13-977J11.5 RNA 0.34 TCGA-CK-5916-01 12 132626683 132626683 G A DDX51 Missense_Mutation p.T290I 0.27 deleterious(0) probably_damaging(0.982) TCGA-CK-5916-01 12 133148008 133148008 G A FBRSL1 Silent p.Q443Q 0.28 TCGA-CK-5916-01 12 14656620 14656620 A G PLBD1 3'UTR 0.31 TCGA-CK-5916-01 12 2162631 2162631 C T CACNA1C 5'Flank 0.29 TCGA-CK-5916-01 12 26492152 26492152 G A ITPR2 3'UTR 0.31 TCGA-CK-5916-01 12 26492261 26492261 T C ITPR2 3'UTR 0.27 TCGA-CK-5916-01 12 27070287 27070287 T - ASUN Frame_Shift_Del p.N356Mfs*41 0.23 TCGA-CK-5916-01 12 27809626 27809626 C T PPFIBP1 Silent p.C289C 0.16 TCGA-CK-5916-01 12 2800300 2800300 C T CACNA1C Missense_Mutation p.R2166C 0.30 tolerated_low_confidence(0.18) benign(0) TCGA-CK-5916-01 12 41966785 41966785 G T PDZRN4 Missense_Mutation p.S735I 0.36 deleterious(0) probably_damaging(0.997) TCGA-CK-5916-01 12 42835257 42835257 G A PPHLN1 Intron 0.34 TCGA-CK-5916-01 12 43826205 43826205 G A ADAMTS20 Missense_Mutation p.R1000C 0.27 tolerated(0.05) probably_damaging(0.968) TCGA-CK-5916-01 12 43945706 43945706 G T ADAMTS20 Missense_Mutation p.L7M 0.16 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 12 44161948 44161948 C T IRAK4 Missense_Mutation p.R12C 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 12 45444408 45444408 C T DBX2 Silent p.T101T 0.37 TCGA-CK-5916-01 12 46355501 46355501 A G SCAF11 Silent p.C67C 0.17 TCGA-CK-5916-01 12 48578271 48578271 G A C12orf68 Silent p.S122S 0.28 TCGA-CK-5916-01 12 4920211 4920211 C T KCNA6 Missense_Mutation p.A335V 0.34 tolerated(0.06) probably_damaging(0.951) TCGA-CK-5916-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.50 TCGA-CK-5916-01 12 49432420 49432420 A - KMT2D Frame_Shift_Del p.Y2907Tfs*3 0.26 TCGA-CK-5916-01 12 49446062 49446062 T C KMT2D Silent p.S468S 0.25 TCGA-CK-5916-01 12 50040734 50040734 C T FMNL3 Missense_Mutation p.R977H 0.33 deleterious(0) probably_damaging(0.993) TCGA-CK-5916-01 12 51634805 51634805 G A DAZAP2 Missense_Mutation p.G95S 0.24 tolerated_low_confidence(0.17) benign(0.023) TCGA-CK-5916-01 12 52180349 52180349 C T SCN8A Silent p.G1322G 0.38 TCGA-CK-5916-01 12 52283257 52283257 C T ANKRD33 Missense_Mutation p.R210W 0.30 deleterious(0) probably_damaging(0.931) TCGA-CK-5916-01 12 52761154 52761154 G A KRT85 Silent p.C12C 0.40 TCGA-CK-5916-01 12 53456891 53456891 T C TENC1 Missense_Mutation p.L1291S 0.22 deleterious(0) probably_damaging(0.991) TCGA-CK-5916-01 12 53469551 53469551 C T SPRYD3 Missense_Mutation p.R72Q 0.17 tolerated(0.38) benign(0.354) TCGA-CK-5916-01 12 53700595 53700595 A T C12orf10 Silent p.G299G 0.27 TCGA-CK-5916-01 12 53876882 53876883 - G MAP3K12 Frame_Shift_Ins p.S569Lfs*35 0.29 TCGA-CK-5916-01 12 54348974 54348974 C T HOXC12 Silent p.R87R 0.33 TCGA-CK-5916-01 12 54383008 54383010 GAA - HOXC10 In_Frame_Del p.K271del 0.28 TCGA-CK-5916-01 12 54756503 54756503 C T GPR84 Missense_Mutation p.R378H 0.32 deleterious(0.04) probably_damaging(0.994) TCGA-CK-5916-01 12 54763856 54763856 C - ZNF385A 3'UTR 0.33 TCGA-CK-5916-01 12 55759110 55759110 G A OR6C75 Silent p.T72T 0.26 TCGA-CK-5916-01 12 56510435 56510435 T - RPL41 5'UTR 0.30 TCGA-CK-5916-01 12 56510445 56510445 T C RPL41 5'UTR 0.22 TCGA-CK-5916-01 12 56622974 56622974 A G NABP2 Missense_Mutation p.T205A 0.10 deleterious_low_confidence(0.01) benign(0.079) TCGA-CK-5916-01 12 56814373 56814373 G A TIMELESS Missense_Mutation p.R1070W 0.36 deleterious(0.01) possibly_damaging(0.893) TCGA-CK-5916-01 12 56847473 56847473 G A MIP Missense_Mutation p.L143F 0.33 deleterious(0.01) probably_damaging(0.946) TCGA-CK-5916-01 12 56871747 56871747 G A GLS2 Missense_Mutation p.R250C 0.32 deleterious(0.03) possibly_damaging(0.726) TCGA-CK-5916-01 12 57577912 57577912 G A LRP1 Missense_Mutation p.A1992T 0.29 probably_damaging(1) TCGA-CK-5916-01 12 57864642 57864642 C A GLI1 Missense_Mutation p.P707T 0.31 tolerated(0.23) benign(0.24) TCGA-CK-5916-01 12 57872951 57872951 G A ARHGAP9 Missense_Mutation p.A80V 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 12 57873510 57873510 T C ARHGAP9 Intron 0.24 TCGA-CK-5916-01 12 57891999 57891999 A G MARS Missense_Mutation p.N277S 0.22 deleterious(0) probably_damaging(0.997) TCGA-CK-5916-01 12 57911083 57911083 C - DDIT3 Frame_Shift_Del p.G59Vfs*28 0.22 TCGA-CK-5916-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.15 TCGA-CK-5916-01 12 58152628 58152628 G A MARCH9 Missense_Mutation p.R330H 0.25 tolerated(0.11) benign(0.189) TCGA-CK-5916-01 12 6230352 6230352 A G VWF Missense_Mutation p.F70L 0.17 deleterious(0.03) probably_damaging(0.977) TCGA-CK-5916-01 12 65634690 65634690 A - LEMD3 Frame_Shift_Del p.M712* 0.27 TCGA-CK-5916-01 12 6669662 6669662 G A NOP2 Missense_Mutation p.A537V 0.31 deleterious(0) probably_damaging(0.995) TCGA-CK-5916-01 12 6760245 6760245 C G ING4 3'UTR 0.51 TCGA-CK-5916-01 12 6761878 6761878 C T ING4 Silent p.S150S 0.25 TCGA-CK-5916-01 12 6941030 6941030 G T LEPREL2 Missense_Mutation p.R387S 0.32 deleterious(0.01) benign(0.281) TCGA-CK-5916-01 12 7074730 7074731 GG - PHB2 3'UTR 0.23 TCGA-CK-5916-01 12 71898411 71898411 A G LGR5 Missense_Mutation p.N77S 0.35 deleterious(0.02) benign(0.014) TCGA-CK-5916-01 12 72038669 72038670 - T ZFC3H1 Frame_Shift_Ins p.V423Sfs*2 0.26 TCGA-CK-5916-01 12 7249755 7249755 G A C1RL Silent p.C232C 0.30 TCGA-CK-5916-01 12 73014915 73014915 A G TRHDE Missense_Mutation p.T788A 0.32 deleterious(0.03) benign(0.006) TCGA-CK-5916-01 12 7805269 7805269 T - APOBEC1 Frame_Shift_Del p.K69Nfs*12 0.26 TCGA-CK-5916-01 12 80658941 80658941 C T OTOGL Silent p.C716C 0.33 TCGA-CK-5916-01 12 80747146 80747146 C T OTOGL Nonsense_Mutation p.R1808* 0.31 TCGA-CK-5916-01 12 81101573 81101573 A G MYF6 Silent p.L25L 0.27 TCGA-CK-5916-01 12 81648873 81648873 T - ACSS3 3'UTR 0.24 TCGA-CK-5916-01 12 8376798 8376798 T - FAM90A1 Frame_Shift_Del p.N46Tfs*16 0.27 TCGA-CK-5916-01 12 8988116 8988116 A G A2ML1 Missense_Mutation p.N166S 0.22 deleterious(0) possibly_damaging(0.895) TCGA-CK-5916-01 12 9087722 9087722 G T PHC1 Silent p.V752V 0.26 TCGA-CK-5916-01 12 9251308 9251308 G A A2M Silent p.H582H 0.39 TCGA-CK-5916-01 12 95867844 95867844 T C METAP2 5'UTR 0.33 TCGA-CK-5916-01 12 97073485 97073485 C A C12orf55 Silent p.R1891R 0.29 TCGA-CK-5916-01 13 101733972 101733972 G A NALCN Missense_Mutation p.S1264L 0.33 deleterious(0.01) possibly_damaging(0.835) TCGA-CK-5916-01 13 103491068 103491068 G A BIVM-ERCC5 Silent p.L371L 0.34 TCGA-CK-5916-01 13 103519121 103519121 A G BIVM-ERCC5 Missense_Mutation p.H1246R 0.25 tolerated(0.22) probably_damaging(0.923) TCGA-CK-5916-01 13 111532004 111532004 G A ANKRD10 Missense_Mutation p.H415Y 0.42 tolerated(0.23) benign(0.007) TCGA-CK-5916-01 13 112722232 112722232 C T SOX1 Missense_Mutation p.A87V 0.29 deleterious(0.03) possibly_damaging(0.655) TCGA-CK-5916-01 13 112725600 112725600 C T SOX1 3'UTR 0.35 TCGA-CK-5916-01 13 113741643 113741643 C T MCF2L Missense_Mutation p.A823V 0.30 deleterious(0) probably_damaging(0.968) TCGA-CK-5916-01 13 114287546 114287546 C T TFDP1 Silent p.D140D 0.33 TCGA-CK-5916-01 13 20577144 20577145 - A ZMYM2 Frame_Shift_Ins p.P337Tfs*41 0.24 TCGA-CK-5916-01 13 20716576 20716576 G A GJA3 Silent p.A284A 0.26 TCGA-CK-5916-01 13 22245934 22245935 - TTC FGF9 5'UTR 0.27 TCGA-CK-5916-01 13 25363493 25363493 G A RNF17 Missense_Mutation p.R264Q 0.29 tolerated(0.3) possibly_damaging(0.885) TCGA-CK-5916-01 13 25482235 25482235 T C CENPJ Missense_Mutation p.T299A 0.28 tolerated(0.16) benign(0.014) TCGA-CK-5916-01 13 29599681 29599681 T C MTUS2 Silent p.P292P 0.32 TCGA-CK-5916-01 13 33628387 33628387 A - KL Frame_Shift_Del p.K436Sfs*7 0.21 TCGA-CK-5916-01 13 35615298 35615298 G T NBEA Missense_Mutation p.A175S 0.32 tolerated(0.16) benign(0.165) TCGA-CK-5916-01 13 35733663 35733663 A - NBEA Frame_Shift_Del p.N1121Mfs*9 0.34 TCGA-CK-5916-01 13 36049373 36049373 G A MAB21L1 Silent p.N301N 0.28 TCGA-CK-5916-01 13 37006641 37006641 G A CCNA1 5'UTR 0.34 TCGA-CK-5916-01 13 37439853 37439853 G A SMAD9 Missense_Mutation p.S275L 0.31 deleterious(0.03) probably_damaging(0.981) TCGA-CK-5916-01 13 38153166 38153168 GAG - POSTN In_Frame_Del p.L628del 0.29 TCGA-CK-5916-01 13 38932242 38932242 G A UFM1 Missense_Mutation p.A44T 0.32 tolerated_low_confidence(0.14) benign(0.304) TCGA-CK-5916-01 13 39262270 39262270 C T FREM2 Silent p.G263G 0.33 TCGA-CK-5916-01 13 42742953 42742953 A G DGKH Missense_Mutation p.R456G 0.28 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 13 42875769 42875769 A - AKAP11 Frame_Shift_Del p.N964Mfs*17 0.26 TCGA-CK-5916-01 13 45965334 45965334 A G SLC25A30 3'Flank 0.23 TCGA-CK-5916-01 13 46357739 46357739 C T SIAH3 Missense_Mutation p.D197N 0.32 tolerated(0.07) benign(0.014) TCGA-CK-5916-01 13 46577381 46577381 T - ZC3H13 Frame_Shift_Del p.K279Nfs*8 0.22 TCGA-CK-5916-01 13 46924469 46924469 G A KIAA0226L Missense_Mutation p.R450W 0.44 deleterious(0.01) possibly_damaging(0.741) TCGA-CK-5916-01 13 48523712 48523712 A - SUCLA2 Frame_Shift_Del p.F378Lfs*14 0.27 TCGA-CK-5916-01 13 48657555 48657555 C T MED4 Missense_Mutation p.V125I 0.28 tolerated(1) benign(0.306) TCGA-CK-5916-01 13 49933960 49933960 T - CAB39L Frame_Shift_Del p.D96Mfs*2 0.27 TCGA-CK-5916-01 13 51501607 51501607 C A RNASEH2B Silent p.P43P 0.35 TCGA-CK-5916-01 13 51915294 51915294 C T SERPINE3 Missense_Mutation p.R23C 0.35 tolerated(0.14) possibly_damaging(0.772) TCGA-CK-5916-01 13 52604648 52604648 G A UTP14C Missense_Mutation p.V570M 0.31 tolerated(0.23) benign(0.097) TCGA-CK-5916-01 13 58207634 58207634 G T PCDH17 Missense_Mutation p.E318D 0.31 deleterious(0.03) probably_damaging(0.994) TCGA-CK-5916-01 13 58208875 58208875 G A PCDH17 Missense_Mutation p.R732H 0.36 tolerated(0.09) benign(0.087) TCGA-CK-5916-01 13 61989252 61989252 C A PCDH20 Nonsense_Mutation p.G14* 0.23 TCGA-CK-5916-01 13 73572987 73572987 G A PIBF1 Missense_Mutation p.V693I 0.32 tolerated(1) benign(0) TCGA-CK-5916-01 13 77817229 77817229 C T MYCBP2 Missense_Mutation p.R827H 0.30 probably_damaging(0.977) TCGA-CK-5916-01 13 79979838 79979838 C T RBM26 Splice_Site p.X24_splice 0.40 TCGA-CK-5916-01 13 92345659 92345659 G A GPC5 Missense_Mutation p.G182S 0.34 deleterious(0.04) benign(0.391) TCGA-CK-5916-01 13 99478171 99478171 G - DOCK9 Frame_Shift_Del p.L1660Ffs*10 0.43 TCGA-CK-5916-01 14 100380617 100380617 A G EML1 Silent p.S551S 0.30 TCGA-CK-5916-01 14 101350873 101350873 G A RTL1 Missense_Mutation p.R85C 0.29 tolerated_low_confidence(0.29) benign(0) TCGA-CK-5916-01 14 102391544 102391545 - A PPP2R5C Frame_Shift_Ins p.H535Qfs*14 0.12 TCGA-CK-5916-01 14 102798098 102798098 A G ZNF839 Missense_Mutation p.Q444R 0.29 tolerated(0.88) benign(0.015) TCGA-CK-5916-01 14 103999082 103999082 C T TRMT61A Silent p.C165C 0.29 TCGA-CK-5916-01 14 105477592 105477593 - T CDCA4 Frame_Shift_Ins p.S226Vfs*31 0.24 TCGA-CK-5916-01 14 105851242 105851242 C T PACS2 Missense_Mutation p.R640C 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 14 105905013 105905013 C T MTA1 Silent p.Y11Y 0.24 TCGA-CK-5916-01 14 105964244 105964244 G A C14orf80 Missense_Mutation p.R294Q 0.26 tolerated(0.35) benign(0.013) TCGA-CK-5916-01 14 106359410 106359410 C A IGHD5-18 Missense_Mutation p.A4S 0.28 unknown(0) TCGA-CK-5916-01 14 106359545 106378259 14:106359545-106378259 - IGHD2-15 large deletion 0.14 TCGA-CK-5916-01 14 20010180 20010180 C T POTEM Silent p.E326E 0.21 TCGA-CK-5916-01 14 20344599 20344599 C T OR4K2 Missense_Mutation p.P58L 0.16 deleterious(0) benign(0.078) TCGA-CK-5916-01 14 20781653 20781654 TG - CCNB1IP1 Frame_Shift_Del p.Q202Vfs*10 0.12 TCGA-CK-5916-01 14 20873743 20873743 A G TEP1 Missense_Mutation p.M246T 0.25 deleterious(0.01) probably_damaging(0.932) TCGA-CK-5916-01 14 21558707 21558707 C - ZNF219 Frame_Shift_Del p.Q720Kfs*28 0.30 TCGA-CK-5916-01 14 21623379 21623379 T C OR5AU1 Missense_Mutation p.Y269C 0.27 deleterious(0.01) probably_damaging(0.983) TCGA-CK-5916-01 14 23398426 23398427 - C PRMT5 Intron 0.30 TCGA-CK-5916-01 14 23947393 23947393 T - NGDN 3'UTR 0.21 TCGA-CK-5916-01 14 24459489 24459489 T C DHRS4L2 Missense_Mutation p.L76P 0.29 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 14 24525547 24525547 C T LRRC16B Silent p.N270N 0.30 TCGA-CK-5916-01 14 24532703 24532703 C - LRRC16B Frame_Shift_Del p.R983Gfs*50 0.46 TCGA-CK-5916-01 14 24683140 24683140 C T CHMP4A 5'Flank 0.34 TCGA-CK-5916-01 14 24896924 24896924 G A CBLN3 3'UTR 0.26 TCGA-CK-5916-01 14 27066542 27066542 G - NOVA1 Frame_Shift_Del p.P34Lfs*19 0.30 TCGA-CK-5916-01 14 29237505 29237505 C T FOXG1 Silent p.P340P 0.41 TCGA-CK-5916-01 14 31602802 31602802 T C HECTD1 Missense_Mutation p.K1220E 0.27 deleterious(0) probably_damaging(0.964) TCGA-CK-5916-01 14 31841078 31841080 AAG - HEATR5A In_Frame_Del p.L340del 0.28 TCGA-CK-5916-01 14 36096721 36096721 T C RALGAPA1 Silent p.P1638P 0.14 TCGA-CK-5916-01 14 37050435 37050435 C T NKX2-8 Nonsense_Mutation p.W131* 0.18 TCGA-CK-5916-01 14 48143804 48143804 C T MDGA2 Missense_Mutation p.V66I 0.23 tolerated_low_confidence(0.53) benign(0.205) TCGA-CK-5916-01 14 50074349 50074349 C T LRR1 Missense_Mutation p.R172C 0.28 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 14 50241300 50241300 T C KLHDC2 Silent p.G85G 0.29 TCGA-CK-5916-01 14 51223419 51223419 T C NIN Silent p.K1443K 0.32 TCGA-CK-5916-01 14 51467448 51467448 C T TRIM9 Missense_Mutation p.D473N 0.32 deleterious(0) possibly_damaging(0.699) TCGA-CK-5916-01 14 57676481 57676481 G A EXOC5 Missense_Mutation p.A581V 0.32 tolerated(0.31) benign(0.003) TCGA-CK-5916-01 14 58956949 58956949 C T KIAA0586 Silent p.A1336A 0.38 TCGA-CK-5916-01 14 59113513 59113513 C T DACT1 Silent p.S724S 0.28 TCGA-CK-5916-01 14 60945046 60945046 C T C14orf39 Missense_Mutation p.V99I 0.30 tolerated(0.55) benign(0) TCGA-CK-5916-01 14 62187237 62187237 C A HIF1A Missense_Mutation p.S82Y 0.32 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 14 62200892 62200892 G T HIF1A Missense_Mutation p.R330M 0.34 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 14 65035126 65035126 A - PPP1R36 Frame_Shift_Del p.N167Tfs*12 0.26 TCGA-CK-5916-01 14 67826504 67826504 C A ATP6V1D 5'UTR 0.12 TCGA-CK-5916-01 14 68273385 68273385 C T ZFYVE26 Silent p.P298P 0.37 TCGA-CK-5916-01 14 69262955 69262955 A G ZFP36L1 5'Flank 0.26 TCGA-CK-5916-01 14 70515614 70515614 G A SLC8A3 Silent p.A759A 0.32 TCGA-CK-5916-01 14 70926261 70926261 T - ADAM21 Frame_Shift_Del p.L684Cfs*3 0.30 TCGA-CK-5916-01 14 72056033 72056033 G A SIPA1L1 Missense_Mutation p.V482M 0.32 deleterious(0) probably_damaging(0.991) TCGA-CK-5916-01 14 72171488 72171488 C T SIPA1L1 Missense_Mutation p.H1233Y 0.32 tolerated(0.26) benign(0.001) TCGA-CK-5916-01 14 72985109 72985109 C T RGS6 Missense_Mutation p.A381V 0.32 deleterious(0.01) benign(0.021) TCGA-CK-5916-01 14 73137762 73137762 A - DPF3 3'UTR 0.38 TCGA-CK-5916-01 14 73406552 73406552 C T DCAF4 Silent p.H45H 0.27 TCGA-CK-5916-01 14 74971826 74971826 C T LTBP2 Missense_Mutation p.R1410H 0.40 deleterious(0.02) benign(0.022) TCGA-CK-5916-01 14 75230947 75230947 C - YLPM1 Frame_Shift_Del p.P254Lfs*35 0.27 TCGA-CK-5916-01 14 88792978 88792978 C T KCNK10 5'Flank 0.33 TCGA-CK-5916-01 14 92506110 92506110 C A TRIP11 5'UTR 0.35 TCGA-CK-5916-01 14 93412729 93412729 A G ITPK1 Missense_Mutation p.I283T 0.27 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 14 94391566 94391566 G A FAM181A 5'UTR 0.25 TCGA-CK-5916-01 14 96998735 96998735 A T PAPOLA Missense_Mutation p.R225S 0.23 deleterious(0) probably_damaging(0.96) TCGA-CK-5916-01 14 99983508 99983508 G T CCDC85C Missense_Mutation p.P330T 0.33 tolerated(0.53) benign(0.018) TCGA-CK-5916-01 15 100211729 100211729 T C MEF2A Missense_Mutation p.L88P 0.28 deleterious(0) probably_damaging(0.991) TCGA-CK-5916-01 15 101438350 101438350 G - ALDH1A3 Frame_Shift_Del p.K284Rfs*83 0.31 TCGA-CK-5916-01 15 101938651 101938651 G A PCSK6 Silent p.P317P 0.25 TCGA-CK-5916-01 15 24923824 24923824 G A NPAP1 Missense_Mutation p.S937N 0.33 tolerated(0.64) benign(0.013) TCGA-CK-5916-01 15 28447653 28447653 C T HERC2 Silent p.V2440V 0.23 TCGA-CK-5916-01 15 28508195 28508195 C T HERC2 Missense_Mutation p.C664Y 0.32 probably_damaging(0.997) TCGA-CK-5916-01 15 35176781 35176781 A G AQR Missense_Mutation p.M991T 0.34 deleterious(0) possibly_damaging(0.477) TCGA-CK-5916-01 15 37110124 37110124 A G CSNK1A1P1 RNA 0.29 TCGA-CK-5916-01 15 38990412 38990412 T G C15orf53 Missense_Mutation p.L69R 0.31 tolerated_low_confidence(0.05) benign(0.071) TCGA-CK-5916-01 15 40587405 40587405 A G PLCB2 Missense_Mutation p.V593A 0.31 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 15 41146835 41146835 A G SPINT1 Splice_Site p.X372_splice 0.26 TCGA-CK-5916-01 15 42003190 42003190 C T MGA Silent p.G909G 0.29 TCGA-CK-5916-01 15 42138439 42138439 C T PLA2G4B Missense_Mutation p.P778S 0.17 tolerated(0.22) benign(0.007) TCGA-CK-5916-01 15 42438405 42438405 G A PLA2G4F Missense_Mutation p.A485V 0.24 deleterious(0.03) benign(0.382) TCGA-CK-5916-01 15 42698129 42698130 - A CAPN3 Frame_Shift_Ins p.T599Nfs*33 0.17 TCGA-CK-5916-01 15 42740716 42740716 A G ZNF106 Missense_Mutation p.Y874H 0.32 deleterious(0.03) possibly_damaging(0.815) TCGA-CK-5916-01 15 42836322 42836322 A G LRRC57 Missense_Mutation p.Y227H 0.29 deleterious(0) possibly_damaging(0.737) TCGA-CK-5916-01 15 43820169 43820169 A G MAP1A Silent p.S2166S 0.30 TCGA-CK-5916-01 15 44091341 44091342 - GT SERINC4 Intron 0.22 TCGA-CK-5916-01 15 48434190 48434190 G T MYEF2 3'UTR 0.25 TCGA-CK-5916-01 15 51766596 51766596 A - DMXL2 Frame_Shift_Del p.F2386Lfs*5 0.25 TCGA-CK-5916-01 15 52697500 52697500 T C MYO5A Missense_Mutation p.D346G 0.19 deleterious(0.03) probably_damaging(0.958) TCGA-CK-5916-01 15 52901859 52901859 C T FAM214A Missense_Mutation p.V418M 0.26 tolerated(0.07) benign(0.068) TCGA-CK-5916-01 15 56035095 56035095 C T PRTG Missense_Mutation p.R12Q 0.29 tolerated_low_confidence(0.2) unknown(0) TCGA-CK-5916-01 15 56388690 56388690 G A RFX7 Silent p.P412P 0.25 TCGA-CK-5916-01 15 58006972 58006972 A G POLR2M 3'UTR 0.19 TCGA-CK-5916-01 15 58007033 58007033 G A POLR2M 3'UTR 0.24 TCGA-CK-5916-01 15 58254216 58254216 C A ALDH1A2 Missense_Mutation p.K415N 0.34 deleterious(0.01) possibly_damaging(0.49) TCGA-CK-5916-01 15 59179213 59179213 T C SLTM Silent p.G932G 0.22 TCGA-CK-5916-01 15 59455454 59455454 A T MYO1E Missense_Mutation p.S843R 0.29 deleterious(0.01) possibly_damaging(0.87) TCGA-CK-5916-01 15 60297208 60297208 T C FOXB1 Missense_Mutation p.Y16H 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 15 65110492 65110492 G A PIF1 Nonsense_Mutation p.R498* 0.21 TCGA-CK-5916-01 15 65114558 65114558 G T PIF1 Missense_Mutation p.L242M 0.25 tolerated(0.13) probably_damaging(1) TCGA-CK-5916-01 15 65489719 65489719 G A CILP Nonsense_Mutation p.R969* 0.39 TCGA-CK-5916-01 15 65945014 65945014 T C SLC24A1 Missense_Mutation p.M973T 0.20 possibly_damaging(0.738) TCGA-CK-5916-01 15 67073533 67073533 G A SMAD6 Missense_Mutation p.R384H 0.47 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 15 68480286 68480286 T - PIAS1 3'UTR 0.24 TCGA-CK-5916-01 15 68596154 68596154 C A ITGA11 Missense_Mutation p.G1151W 0.38 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 15 69347700 69347700 A G NOX5 Missense_Mutation p.M676V 0.36 deleterious(0) possibly_damaging(0.842) TCGA-CK-5916-01 15 71124622 71124622 C T LARP6 Silent p.K415K 0.28 TCGA-CK-5916-01 15 74426972 74426972 G A ISLR2 Missense_Mutation p.R626H 0.27 deleterious(0) probably_damaging(0.991) TCGA-CK-5916-01 15 74429092 74429092 G - ISLR2 3'UTR 0.25 TCGA-CK-5916-01 15 75499804 75499804 C - C15orf39 Frame_Shift_Del p.P474Qfs*91 0.34 TCGA-CK-5916-01 15 75772243 75772243 T C PTPN9 Missense_Mutation p.N359D 0.25 deleterious(0.05) probably_damaging(0.928) TCGA-CK-5916-01 15 77759568 77759569 AA - HMG20A Frame_Shift_Del p.K124Efs*16 0.26 TCGA-CK-5916-01 15 77906370 77906371 - C LINGO1 3'UTR 0.23 TCGA-CK-5916-01 15 77907780 77907780 T C LINGO1 Missense_Mutation p.I157V 0.24 tolerated(0.45) benign(0.132) TCGA-CK-5916-01 15 79589325 79589325 G A ANKRD34C 3'UTR 0.31 TCGA-CK-5916-01 15 79755537 79755537 C - KIAA1024 Frame_Shift_Del p.L811Cfs*7 0.32 TCGA-CK-5916-01 15 84651995 84651995 A - ADAMTSL3 Frame_Shift_Del p.R1207Gfs*32 0.23 TCGA-CK-5916-01 15 85345534 85345534 G A ZNF592 Silent p.P1238P 0.32 TCGA-CK-5916-01 15 86284674 86284674 G A AKAP13 Missense_Mutation p.R2673H 0.37 deleterious(0.03) benign(0.014) TCGA-CK-5916-01 15 89753544 89753544 T C RLBP1 Missense_Mutation p.Q309R 0.36 tolerated(1) benign(0) TCGA-CK-5916-01 15 93563245 93563245 G A CHD2 Missense_Mutation p.R1637Q 0.33 tolerated(0.1) benign(0.138) TCGA-CK-5916-01 16 1251933 1251933 G A CACNA1H Missense_Mutation p.V495M 0.33 tolerated(0.24) benign(0.235) TCGA-CK-5916-01 16 14038646 14038646 A G ERCC4 Silent p.V657V 0.28 TCGA-CK-5916-01 16 1412514 1412514 C T GNPTG Silent p.A196A 0.44 TCGA-CK-5916-01 16 14346300 14346300 C - MKL2 Frame_Shift_Del p.R834Afs*44 0.30 TCGA-CK-5916-01 16 14761670 14761670 A G BFAR Missense_Mutation p.T447A 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CK-5916-01 16 15737173 15737173 T - NDE1 5'UTR 0.43 TCGA-CK-5916-01 16 1576748 1576748 G A IFT140 Silent p.L817L 0.38 TCGA-CK-5916-01 16 15771723 15771723 G A NDE1 Silent p.A101A 0.28 TCGA-CK-5916-01 16 15841978 15841979 - T MYH11 Frame_Shift_Ins p.N709Kfs*56 0.25 TCGA-CK-5916-01 16 17235181 17235181 G A XYLT1 Silent p.D472D 0.23 TCGA-CK-5916-01 16 1842196 1842196 C T IGFALS Missense_Mutation p.G113S 0.35 tolerated(0.75) benign(0.011) TCGA-CK-5916-01 16 19451434 19451434 G A TMC5 Missense_Mutation p.R25H 0.30 tolerated_low_confidence(1) benign(0) TCGA-CK-5916-01 16 2030702 2030702 C T NOXO1 Missense_Mutation p.A60T 0.45 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 16 20328684 20328684 G A GP2 Missense_Mutation p.R426C 0.34 tolerated(0.14) possibly_damaging(0.892) TCGA-CK-5916-01 16 20990834 20990834 C T DNAH3 Missense_Mutation p.V2632I 0.31 tolerated(0.18) benign(0.385) TCGA-CK-5916-01 16 22268698 22268698 G A EEF2K Missense_Mutation p.G298D 0.29 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 16 22278105 22278105 G A EEF2K Missense_Mutation p.A558T 0.29 deleterious(0) probably_damaging(0.937) TCGA-CK-5916-01 16 2260871 2260871 G A BRICD5 5'UTR 0.38 TCGA-CK-5916-01 16 22926313 22926313 G A HS3ST2 Silent p.T178T 0.35 TCGA-CK-5916-01 16 24268215 24268215 A G CACNG3 Missense_Mutation p.D47G 0.33 tolerated(0.12) possibly_damaging(0.676) TCGA-CK-5916-01 16 24802313 24802313 G T TNRC6A Missense_Mutation p.G784C 0.43 tolerated(0.07) probably_damaging(0.998) TCGA-CK-5916-01 16 24802967 24802967 G A TNRC6A Missense_Mutation p.D1002N 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-CK-5916-01 16 2578619 2578619 C - AMDHD2 Frame_Shift_Del p.R346Efs*13 0.30 TCGA-CK-5916-01 16 27268895 27268895 G T NSMCE1 5'UTR 0.41 TCGA-CK-5916-01 16 27367182 27367182 A G IL4R Missense_Mutation p.I242V 0.18 tolerated(1) benign(0.001) TCGA-CK-5916-01 16 27374931 27374931 C T IL4R Missense_Mutation p.S753L 0.12 tolerated(0.16) benign(0.01) TCGA-CK-5916-01 16 27506646 27506646 C A GTF3C1 Missense_Mutation p.G840C 0.46 deleterious(0.01) possibly_damaging(0.789) TCGA-CK-5916-01 16 2816615 2816615 G A SRRM2 Missense_Mutation p.R2029H 0.29 unknown(0) TCGA-CK-5916-01 16 2881905 2881905 C T ZG16B Silent p.V124V 0.26 TCGA-CK-5916-01 16 28883861 28883861 C T SH2B1 Missense_Mutation p.R578C 0.35 deleterious(0) probably_damaging(0.96) TCGA-CK-5916-01 16 29997895 29997895 G T TAOK2 Missense_Mutation p.G768C 0.44 deleterious_low_confidence(0) benign(0.299) TCGA-CK-5916-01 16 30021422 30021422 C A DOC2A Missense_Mutation p.G41V 0.35 tolerated(0.37) benign(0.011) TCGA-CK-5916-01 16 30106823 30106823 G A YPEL3 5'UTR 0.28 TCGA-CK-5916-01 16 30364358 30364358 G - CD2BP2 Frame_Shift_Del p.P325Lfs*58 0.25 TCGA-CK-5916-01 16 30455939 30455939 G T SEPHS2 Silent p.T370T 0.18 TCGA-CK-5916-01 16 30735763 30735763 C T SRCAP Missense_Mutation p.P1673L 0.31 benign(0.252) TCGA-CK-5916-01 16 30736305 30736305 C T SRCAP Missense_Mutation p.R1854C 0.34 probably_damaging(0.973) TCGA-CK-5916-01 16 30736370 30736371 - C SRCAP Frame_Shift_Ins p.P1879Tfs*21 0.32 TCGA-CK-5916-01 16 30982715 30982715 C T SETD1A Silent p.S1011S 0.29 TCGA-CK-5916-01 16 30990720 30990720 C T SETD1A Missense_Mutation p.R1205W 0.38 unknown(0) TCGA-CK-5916-01 16 3100516 3100516 C T MMP25 Silent p.D210D 0.29 TCGA-CK-5916-01 16 31075680 31075680 G A ZNF668 Missense_Mutation p.A57V 0.39 tolerated(0.56) benign(0.014) TCGA-CK-5916-01 16 31075793 31075793 C T ZNF668 Silent p.P19P 0.38 TCGA-CK-5916-01 16 31089734 31089734 C T ZNF646 Missense_Mutation p.R697W 0.31 deleterious(0.03) benign(0.006) TCGA-CK-5916-01 16 31196420 31196420 C T FUS Silent p.G228G 0.36 TCGA-CK-5916-01 16 31383787 31383787 G A ITGAX Missense_Mutation p.R750Q 0.40 tolerated(0.31) benign(0.001) TCGA-CK-5916-01 16 31485222 31485222 C A TGFB1I1 Missense_Mutation p.S83R 0.37 tolerated(0.06) probably_damaging(0.941) TCGA-CK-5916-01 16 3351530 3351530 T - TIGD7 5'UTR 0.28 TCGA-CK-5916-01 16 4016307 4016307 G A ADCY9 Silent p.I1177I 0.38 TCGA-CK-5916-01 16 424031 424031 C T TMEM8A Missense_Mutation p.A626T 0.22 deleterious(0) probably_damaging(0.984) TCGA-CK-5916-01 16 426147 426147 G A TMEM8A Missense_Mutation p.R405W 0.43 tolerated(0.12) benign(0.002) TCGA-CK-5916-01 16 4410338 4410338 G A CORO7 Silent p.R683R 0.42 TCGA-CK-5916-01 16 4659786 4659786 C T UBALD1 Missense_Mutation p.A128T 0.22 tolerated_low_confidence(0.14) unknown(0) TCGA-CK-5916-01 16 46771664 46771664 G T MYLK3 Silent p.A320A 0.36 TCGA-CK-5916-01 16 47189455 47189455 A - ITFG1 3'UTR 0.39 TCGA-CK-5916-01 16 4723561 4723561 G T MGRN1 Silent p.R286R 0.34 TCGA-CK-5916-01 16 48139084 48139084 G A ABCC12 Missense_Mutation p.A880V 0.30 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 16 4864623 4864623 G C GLYR1 Missense_Mutation p.A311G 0.29 deleterious(0) possibly_damaging(0.594) TCGA-CK-5916-01 16 49669967 49669967 C T ZNF423 Silent p.T1032T 0.28 TCGA-CK-5916-01 16 50102729 50102729 A G HEATR3 Missense_Mutation p.D117G 0.32 deleterious(0.01) possibly_damaging(0.554) TCGA-CK-5916-01 16 53330948 53330948 T C CHD9 Missense_Mutation p.F1864S 0.16 probably_damaging(0.974) TCGA-CK-5916-01 16 53337863 53337863 C T CHD9 Missense_Mutation p.T1982I 0.30 probably_damaging(1) TCGA-CK-5916-01 16 53338226 53338226 G A CHD9 Missense_Mutation p.R2103H 0.28 probably_damaging(0.978) TCGA-CK-5916-01 16 57007284 57007284 C - CETP Frame_Shift_Del p.T266Pfs*28 0.25 TCGA-CK-5916-01 16 57065342 57065342 C - NLRC5 Frame_Shift_Del p.P816Rfs*30 0.29 TCGA-CK-5916-01 16 57111712 57111712 G T NLRC5 Missense_Mutation p.L1667F 0.31 deleterious(0.03) possibly_damaging(0.812) TCGA-CK-5916-01 16 57394394 57394394 A G CCL22 Missense_Mutation p.Y40C 0.45 deleterious(0) probably_damaging(0.988) TCGA-CK-5916-01 16 57713748 57713748 A G GPR97 Silent p.V216V 0.28 TCGA-CK-5916-01 16 57804546 57804546 G A KIFC3 Missense_Mutation p.R278W 0.31 deleterious(0) possibly_damaging(0.726) TCGA-CK-5916-01 16 58011778 58011779 - C TEPP Frame_Shift_Ins p.A77Gfs*42 0.18 TCGA-CK-5916-01 16 58077475 58077475 G T MMP15 Missense_Mutation p.S505I 0.25 deleterious(0) benign(0.399) TCGA-CK-5916-01 16 58705111 58705111 C - SLC38A7 Frame_Shift_Del p.V357Cfs*38 0.18 TCGA-CK-5916-01 16 66802059 66802059 A - CCDC79 Frame_Shift_Del p.F544Lfs*11 0.21 TCGA-CK-5916-01 16 67244008 67244008 C T LRRC29 Missense_Mutation p.M28I 0.38 tolerated_low_confidence(0.18) benign(0) TCGA-CK-5916-01 16 67270973 67270973 G A FHOD1 Silent p.G346G 0.32 TCGA-CK-5916-01 16 67681657 67681657 T C RLTPR Silent p.L316L 0.36 TCGA-CK-5916-01 16 67914760 67914760 G - EDC4 Frame_Shift_Del p.D801Mfs*15 0.14 TCGA-CK-5916-01 16 67973845 67973845 A G LCAT Missense_Mutation p.S429P 0.14 tolerated_low_confidence(0.9) unknown(0) TCGA-CK-5916-01 16 68598535 68598536 - A ZFP90 Frame_Shift_Ins p.N617Kfs*10 0.23 TCGA-CK-5916-01 16 70389403 70389403 G A DDX19A Missense_Mutation p.S41N 0.34 tolerated(0.58) benign(0) TCGA-CK-5916-01 16 71483289 71483289 C T ZNF23 Nonsense_Mutation p.W213* 0.30 TCGA-CK-5916-01 16 75512887 75512887 C T CHST6 Silent p.P280P 0.32 TCGA-CK-5916-01 16 75642799 75642799 G A ADAT1 Silent p.R377R 0.22 TCGA-CK-5916-01 16 76573692 76573692 T C CNTNAP4 Silent p.A1026A 0.19 TCGA-CK-5916-01 16 77327023 77327023 G A ADAMTS18 Nonsense_Mutation p.R1047* 0.24 TCGA-CK-5916-01 16 81320950 81320950 C T BCMO1 Silent p.D451D 0.25 TCGA-CK-5916-01 16 84213926 84213926 G A TAF1C Missense_Mutation p.R471C 0.33 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 16 84224914 84224914 C - ADAD2 Frame_Shift_Del p.Q28Sfs*37 0.27 TCGA-CK-5916-01 16 86612374 86612374 G A FOXL1 Silent p.S15S 0.23 TCGA-CK-5916-01 16 87393900 87393900 C T FBXO31 Splice_Site p.X138_splice 0.31 TCGA-CK-5916-01 16 87446680 87446680 G A ZCCHC14 Silent p.S438S 0.39 TCGA-CK-5916-01 16 87677897 87677897 G A JPH3 Missense_Mutation p.R139H 0.39 deleterious(0) probably_damaging(0.994) TCGA-CK-5916-01 16 88495835 88495835 C - ZNF469 Frame_Shift_Del p.H655Tfs*77 0.33 TCGA-CK-5916-01 16 88504177 88504177 C T ZNF469 Silent p.F3405F 0.50 TCGA-CK-5916-01 16 88504203 88504203 G - ZNF469 Frame_Shift_Del p.R3417Gfs*56 0.56 TCGA-CK-5916-01 16 88677748 88677748 C T ZC3H18 Missense_Mutation p.R427W 0.38 deleterious_low_confidence(0) unknown(0) TCGA-CK-5916-01 16 88788247 88788247 C T PIEZO1 Missense_Mutation p.R1728H 0.26 deleterious(0.01) benign(0.099) TCGA-CK-5916-01 16 88951498 88951498 C T CBFA2T3 Missense_Mutation p.R358H 0.41 tolerated(0.08) benign(0.023) TCGA-CK-5916-01 16 89294263 89294263 C T ZNF778 Missense_Mutation p.H495Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-CK-5916-01 16 89348283 89348283 G A ANKRD11 Missense_Mutation p.A1556V 0.34 benign(0.002) TCGA-CK-5916-01 16 89763882 89763882 C T SPATA2L Missense_Mutation p.A379T 0.33 tolerated(0.14) benign(0.041) TCGA-CK-5916-01 16 8992485 8992485 C A USP7 Missense_Mutation p.G848V 0.34 tolerated(0.31) benign(0.299) TCGA-CK-5916-01 16 89972626 89972626 A G TCF25 Silent p.A551A 0.14 TCGA-CK-5916-01 16 920820 920820 G A LMF1 Missense_Mutation p.P381S 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-CK-5916-01 16 9923375 9923375 C T GRIN2A Missense_Mutation p.A638T 0.33 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 17 10219289 10219289 T C MYH13 Silent p.K1264K 0.13 TCGA-CK-5916-01 17 10231195 10231195 C T MYH13 Silent p.L893L 0.32 TCGA-CK-5916-01 17 10236473 10236473 G A MYH13 Missense_Mutation p.R698C 0.29 deleterious(0.01) benign(0.014) TCGA-CK-5916-01 17 10417433 10417433 G T MYH1 Missense_Mutation p.S181Y 0.29 deleterious(0) probably_damaging(0.99) TCGA-CK-5916-01 17 12893458 12893460 GGA - ARHGAP44 In_Frame_Del p.E812del 0.22 TCGA-CK-5916-01 17 15974940 15974940 A G NCOR1 Missense_Mutation p.L1312P 0.29 probably_damaging(0.999) TCGA-CK-5916-01 17 16320988 16320988 C A TRPV2 Silent p.T2T 0.36 TCGA-CK-5916-01 17 17124766 17124766 A G FLCN Intron 0.28 TCGA-CK-5916-01 17 17394633 17394633 G A MED9 Missense_Mutation p.A89T 0.33 tolerated(0.31) benign(0.099) TCGA-CK-5916-01 17 18030391 18030392 GA - MYO15A Frame_Shift_Del p.S1317Rfs*6 0.39 TCGA-CK-5916-01 17 18088243 18088243 G A ALKBH5 Missense_Mutation p.G229D 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 17 18188760 18188760 G A TOP3A Missense_Mutation p.R558W 0.32 tolerated(0.15) possibly_damaging(0.893) TCGA-CK-5916-01 17 1960240 1960240 C T HIC1 Missense_Mutation p.R105C 0.31 deleterious(0.01) possibly_damaging(0.898) TCGA-CK-5916-01 17 20805662 20805662 A G RP11-344E13.3 RNA 0.23 TCGA-CK-5916-01 17 21319524 21319524 G T KCNJ12 Silent p.T290T 0.12 TCGA-CK-5916-01 17 21825470 21825470 G A FAM27L RNA 0.34 TCGA-CK-5916-01 17 26851719 26851719 G A FOXN1 Missense_Mutation p.A108T 0.37 tolerated_low_confidence(0.93) benign(0.002) TCGA-CK-5916-01 17 26919218 26919218 T G SPAG5 Missense_Mutation p.K348N 0.28 deleterious(0.02) probably_damaging(0.922) TCGA-CK-5916-01 17 27437518 27437523 GTTTTC TTTCT MYO18A Frame_Shift_Del p.K1007Efs*19 0.39 TCGA-CK-5916-01 17 27580801 27580801 G A CRYBA1 Splice_Site p.X167_splice 0.32 TCGA-CK-5916-01 17 28616398 28616399 - A BLMH Frame_Shift_Ins p.W105Lfs*5 0.28 TCGA-CK-5916-01 17 28849478 28849478 C A GOSR1 3'UTR 0.29 TCGA-CK-5916-01 17 2996161 2996161 G A OR1D2 Missense_Mutation p.L44F 0.33 deleterious(0.03) benign(0.242) TCGA-CK-5916-01 17 30696726 30696726 G A ZNF207 Missense_Mutation p.R478Q 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-CK-5916-01 17 30986145 30986145 G A MYO1D Missense_Mutation p.T778M 0.33 tolerated(0.15) benign(0.003) TCGA-CK-5916-01 17 34340329 34340329 G A CCL23 Nonsense_Mutation p.R108* 0.25 TCGA-CK-5916-01 17 35300416 35300416 G A LHX1 Silent p.A403A 0.32 TCGA-CK-5916-01 17 35592006 35592006 C T ACACA Missense_Mutation p.D1044N 0.07 deleterious(0.01) possibly_damaging(0.447) TCGA-CK-5916-01 17 35605000 35605000 G A ACACA Silent p.D748D 0.35 TCGA-CK-5916-01 17 35872581 35872581 C A DUSP14 Silent p.P69P 0.24 TCGA-CK-5916-01 17 36708254 36708254 G - SRCIN1 Frame_Shift_Del p.S866Afs*4 0.30 TCGA-CK-5916-01 17 36708744 36708744 G A SRCIN1 Missense_Mutation p.R807C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 17 36878156 36878156 G A MLLT6 Missense_Mutation p.R823H 0.39 deleterious(0.01) unknown(0) TCGA-CK-5916-01 17 37353722 37353722 C T CACNB1 Silent p.R9R 0.26 TCGA-CK-5916-01 17 37672006 37672006 A G CDK12 Missense_Mutation p.T931A 0.25 probably_damaging(0.996) TCGA-CK-5916-01 17 38245667 38245667 C - THRA Intron 0.22 TCGA-CK-5916-01 17 38320127 38320127 A C CASC3 Silent p.P393P 0.19 TCGA-CK-5916-01 17 3844555 3844555 G A ATP2A3 Nonsense_Mutation p.R604* 0.38 TCGA-CK-5916-01 17 38600209 38600209 C T IGFBP4 Silent p.C74C 0.36 TCGA-CK-5916-01 17 38953457 38953457 G A KRT28 Missense_Mutation p.A256V 0.30 deleterious(0.01) benign(0.069) TCGA-CK-5916-01 17 38978239 38978239 T C KRT10 Missense_Mutation p.Y200C 0.18 deleterious(0.03) probably_damaging(0.99) TCGA-CK-5916-01 17 3945750 3945750 T C ZZEF1 Silent p.L2093L 0.20 TCGA-CK-5916-01 17 39506725 39506725 C T KRT33A Missense_Mutation p.V99M 0.28 tolerated(0.28) benign(0.026) TCGA-CK-5916-01 17 39768734 39768734 G A KRT16 Silent p.G69G 0.36 TCGA-CK-5916-01 17 39890570 39890570 C T HAP1 Missense_Mutation p.R106H 0.26 deleterious(0.02) possibly_damaging(0.715) TCGA-CK-5916-01 17 39914968 39914968 G A JUP Missense_Mutation p.T551M 0.22 tolerated(0.16) benign(0.315) TCGA-CK-5916-01 17 39967429 39967429 G A LEPREL4 Silent p.D190D 0.32 TCGA-CK-5916-01 17 40011270 40011271 TC - KLHL11 Frame_Shift_Del p.R283Ifs*3 0.29 TCGA-CK-5916-01 17 40023863 40023863 A - ACLY 3'UTR 0.44 TCGA-CK-5916-01 17 40696081 40696081 T C NAGLU Missense_Mutation p.V686A 0.28 deleterious(0) benign(0.3) TCGA-CK-5916-01 17 40817529 40817529 C A TUBG2 Silent p.A214A 0.27 TCGA-CK-5916-01 17 40837024 40837024 G A CNTNAP1 Missense_Mutation p.V127M 0.33 tolerated(0.5) benign(0.186) TCGA-CK-5916-01 17 40844649 40844649 G A CNTNAP1 Missense_Mutation p.R888Q 0.37 tolerated(0.29) probably_damaging(0.998) TCGA-CK-5916-01 17 41243824 41243824 T C BRCA1 Missense_Mutation p.T1242A 0.18 deleterious(0.02) possibly_damaging(0.669) TCGA-CK-5916-01 17 42082082 42082082 G A NAGS Silent p.P17P 0.27 TCGA-CK-5916-01 17 42164967 42164968 - C HDAC5 Frame_Shift_Ins p.E567Gfs*15 0.28 TCGA-CK-5916-01 17 42226055 42226055 G A C17orf53 Missense_Mutation p.R295H 0.37 tolerated(0.67) benign(0.004) TCGA-CK-5916-01 17 42475153 42475153 G A GPATCH8 Missense_Mutation p.A1431V 0.30 deleterious(0) unknown(0) TCGA-CK-5916-01 17 42828185 42828185 A G DBF4B Missense_Mutation p.E471G 0.29 deleterious_low_confidence(0) benign(0.066) TCGA-CK-5916-01 17 43003863 43003863 A C KIF18B Missense_Mutation p.S791A 0.39 tolerated(0.19) possibly_damaging(0.539) TCGA-CK-5916-01 17 43221076 43221077 - G ACBD4 3'UTR 0.22 TCGA-CK-5916-01 17 43922540 43922540 C T SPPL2C Missense_Mutation p.R90C 0.24 tolerated(0.06) benign(0.025) TCGA-CK-5916-01 17 44039823 44039823 C T MAPT Silent p.D40D 0.25 TCGA-CK-5916-01 17 44073988 44073988 C T MAPT Silent p.I595I 0.25 TCGA-CK-5916-01 17 44626088 44626088 G A LRRC37A2 Missense_Mutation p.A1195T 0.12 tolerated(0.19) probably_damaging(0.971) TCGA-CK-5916-01 17 44952507 44952507 C T WNT9B Silent p.A125A 0.29 TCGA-CK-5916-01 17 45451897 45451897 G A EFCAB13 Missense_Mutation p.A313T 0.30 tolerated(0.31) benign(0.05) TCGA-CK-5916-01 17 46136921 46136921 G A NFE2L1 Missense_Mutation p.G746D 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 17 47916028 47916029 CT - TAC4 Frame_Shift_Del p.E106Gfs*2 0.28 TCGA-CK-5916-01 17 48149405 48149405 G - ITGA3 Frame_Shift_Del p.G340Vfs*7 0.28 TCGA-CK-5916-01 17 48668887 48668887 C T CACNA1G Missense_Mutation p.P849S 0.28 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 17 49374355 49374355 A G UTP18 3'UTR 0.17 TCGA-CK-5916-01 17 4999277 4999277 G T ZFP3 3'UTR 0.33 TCGA-CK-5916-01 17 5015118 5015119 - G ZNF232 5'UTR 0.40 TCGA-CK-5916-01 17 53237418 53237418 T C STXBP4 3'UTR 0.32 TCGA-CK-5916-01 17 5462268 5462268 T - NLRP1 Frame_Shift_Del p.K583Rfs*14 0.28 TCGA-CK-5916-01 17 55123725 55123725 G A RNF126P1 RNA 0.42 TCGA-CK-5916-01 17 56327033 56327033 C T LPO Missense_Mutation p.R184C 0.29 tolerated(0.17) probably_damaging(1) TCGA-CK-5916-01 17 56448292 56448293 - G RNF43 Frame_Shift_Ins p.C119Lfs*6 0.21 TCGA-CK-5916-01 17 57679977 57679977 G A DHX40 Missense_Mutation p.R634K 0.20 tolerated(1) possibly_damaging(0.801) TCGA-CK-5916-01 17 58313499 58313499 G A USP32 Silent p.Y413Y 0.27 TCGA-CK-5916-01 17 59821818 59821818 G A BRIP1 Silent p.D744D 0.26 TCGA-CK-5916-01 17 60039124 60039124 T C MED13 Missense_Mutation p.Y1694C 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CK-5916-01 17 60742035 60742035 G A MRC2 Missense_Mutation p.R82Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CK-5916-01 17 61396424 61396424 G T TANC2 Missense_Mutation p.E442D 0.34 tolerated(0.18) benign(0.005) TCGA-CK-5916-01 17 61744359 61744359 C T MAP3K3 Silent p.S178S 0.34 TCGA-CK-5916-01 17 61776005 61776005 C T LIMD2 Silent p.K97K 0.27 TCGA-CK-5916-01 17 61781029 61781029 T C STRADA Missense_Mutation p.Q409R 0.39 tolerated(0.43) benign(0.001) TCGA-CK-5916-01 17 61781804 61781804 G - STRADA Frame_Shift_Del p.R333Gfs*42 0.33 TCGA-CK-5916-01 17 62496013 62496013 A T DDX5 3'UTR 0.29 TCGA-CK-5916-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.35 TCGA-CK-5916-01 17 6547771 6547771 G A MED31 3'UTR 0.30 TCGA-CK-5916-01 17 66917520 66917520 T C ABCA8 Intron 0.23 TCGA-CK-5916-01 17 67260957 67260957 A - ABCA5 Frame_Shift_Del p.F1078Lfs*6 0.26 TCGA-CK-5916-01 17 68171633 68171633 G A KCNJ2 Silent p.T151T 0.31 TCGA-CK-5916-01 17 68174799 68174799 G - KCNJ2 3'UTR 0.30 TCGA-CK-5916-01 17 6980287 6980287 G A CLEC10A Silent p.D68D 0.20 TCGA-CK-5916-01 17 71346417 71346417 G A SDK2 Silent p.S1999S 0.37 TCGA-CK-5916-01 17 7138885 7138885 C A PHF23 3'UTR 0.35 TCGA-CK-5916-01 17 71391523 71391523 C T SDK2 Silent p.P1121P 0.25 TCGA-CK-5916-01 17 7250520 7250520 C T ACAP1 Silent p.N434N 0.24 TCGA-CK-5916-01 17 7253289 7253289 T G ACAP1 Missense_Mutation p.L626R 0.24 deleterious(0) probably_damaging(0.972) TCGA-CK-5916-01 17 72768357 72768357 C T NAT9 Missense_Mutation p.G132R 0.20 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 17 73500039 73500039 G A CASKIN2 Missense_Mutation p.A491V 0.35 deleterious(0.04) probably_damaging(0.984) TCGA-CK-5916-01 17 73780978 73780978 G A UNK Missense_Mutation p.G6E 0.38 tolerated_low_confidence(0.16) unknown(0) TCGA-CK-5916-01 17 73845690 73845690 G A WBP2 Missense_Mutation p.A100V 0.27 deleterious(0.01) possibly_damaging(0.686) TCGA-CK-5916-01 17 7386167 7386167 C T SLC35G6 Silent p.S288S 0.26 TCGA-CK-5916-01 17 74005434 74005434 G A EVPL Silent p.H1284H 0.19 TCGA-CK-5916-01 17 7412360 7412360 A G POLR2A Missense_Mutation p.E1188G 0.31 probably_damaging(0.994) TCGA-CK-5916-01 17 74383614 74383614 C - SPHK1 Frame_Shift_Del p.P455Rfs*56 0.43 TCGA-CK-5916-01 17 74721886 74721886 C T JMJD6 Missense_Mutation p.E61K 0.34 tolerated(0.09) possibly_damaging(0.468) TCGA-CK-5916-01 17 74730948 74730948 A - SRSF2 3'UTR 0.27 TCGA-CK-5916-01 17 74740452 74740453 - G MFSD11 Frame_Shift_Ins p.T184Dfs*13 0.26 TCGA-CK-5916-01 17 7480925 7480925 C A EIF4A1 Silent p.T269T 0.24 TCGA-CK-5916-01 17 74865064 74865064 G A MGAT5B 5'Flank 0.32 TCGA-CK-5916-01 17 7492565 7492565 C T SOX15 Missense_Mutation p.G144S 0.44 tolerated_low_confidence(0.17) benign(0.018) TCGA-CK-5916-01 17 75471827 75471827 G A SEPT9 Intron 0.50 TCGA-CK-5916-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.35 TCGA-CK-5916-01 17 76157045 76157045 C A C17orf99 Missense_Mutation p.P27H 0.31 deleterious(0.03) probably_damaging(0.979) TCGA-CK-5916-01 17 76354578 76354578 T C SOCS3 Missense_Mutation p.H200R 0.16 tolerated(0.28) benign(0.027) TCGA-CK-5916-01 17 76400034 76400034 G - PGS1 Frame_Shift_Del p.V424Wfs*60 0.35 TCGA-CK-5916-01 17 76446859 76446859 G A DNAH17 Missense_Mutation p.R3588C 0.35 benign(0.416) TCGA-CK-5916-01 17 76498968 76498968 C A DNAH17 Missense_Mutation p.Q1690H 0.34 probably_damaging(0.993) TCGA-CK-5916-01 17 76533499 76533499 G A DNAH17 Missense_Mutation p.P914L 0.33 probably_damaging(0.999) TCGA-CK-5916-01 17 76567704 76567704 G T DNAH17 Silent p.R234R 0.35 TCGA-CK-5916-01 17 77073756 77073756 G A ENGASE Missense_Mutation p.D76N 0.36 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 17 7796730 7796730 A G CHD3 Silent p.A271A 0.31 TCGA-CK-5916-01 17 78444561 78444561 C T NPTX1 3'UTR 0.30 TCGA-CK-5916-01 17 79163599 79163599 C T AZI1 Silent p.Q1071Q 0.23 TCGA-CK-5916-01 17 79609389 79609389 C T TSPAN10 5'UTR 0.37 TCGA-CK-5916-01 17 79612210 79612210 A G TSPAN10 Missense_Mutation p.K77E 0.32 deleterious(0) possibly_damaging(0.486) TCGA-CK-5916-01 17 79826573 79826573 G A ARHGDIA 3'UTR 0.60 TCGA-CK-5916-01 17 80022804 80022804 G T DUS1L Nonsense_Mutation p.C44* 0.29 TCGA-CK-5916-01 17 80159424 80159424 G A CCDC57 Missense_Mutation p.R133C 0.40 deleterious(0) probably_damaging(0.947) TCGA-CK-5916-01 17 80540798 80540798 C T FOXK2 Missense_Mutation p.P364L 0.25 tolerated(0.06) possibly_damaging(0.838) TCGA-CK-5916-01 17 80788059 80788059 C T ZNF750 Missense_Mutation p.A711T 0.29 tolerated(0.23) benign(0.096) TCGA-CK-5916-01 17 8137837 8137837 T C CTC1 Missense_Mutation p.Q585R 0.25 deleterious(0.03) probably_damaging(0.938) TCGA-CK-5916-01 17 8215610 8215610 C A ARHGEF15 Missense_Mutation p.L85I 0.27 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-CK-5916-01 17 970445 970445 G - ABR Frame_Shift_Del p.L352Wfs*29 0.33 TCGA-CK-5916-01 18 10487900 10487900 G A APCDD1 Silent p.S470S 0.32 TCGA-CK-5916-01 18 12673206 12673206 T - CEP76 3'UTR 0.40 TCGA-CK-5916-01 18 13059164 13059164 T C CEP192 Silent p.L1447L 0.32 TCGA-CK-5916-01 18 19154690 19154691 - T ESCO1 Frame_Shift_Ins p.S39Ifs*12 0.22 TCGA-CK-5916-01 18 19154750 19154750 T - ESCO1 Frame_Shift_Del p.S19Vfs*17 0.15 TCGA-CK-5916-01 18 19378064 19378064 G A MIB1 Missense_Mutation p.R371Q 0.24 tolerated(0.11) benign(0.036) TCGA-CK-5916-01 18 203145 203146 - T USP14 Frame_Shift_Ins p.Y333Lfs*2 0.31 TCGA-CK-5916-01 18 22057273 22057273 T A HRH4 Missense_Mutation p.I307N 0.28 deleterious(0) probably_damaging(0.992) TCGA-CK-5916-01 18 29044136 29044136 A T DSG3 Missense_Mutation p.E354D 0.31 tolerated(0.15) possibly_damaging(0.801) TCGA-CK-5916-01 18 29044154 29044154 C G DSG3 Missense_Mutation p.I360M 0.29 tolerated(0.12) probably_damaging(0.965) TCGA-CK-5916-01 18 29848074 29848074 G A GAREM Silent p.G797G 0.37 TCGA-CK-5916-01 18 30804842 30804842 T - CCDC178 Frame_Shift_Del p.N572Ifs*19 0.25 TCGA-CK-5916-01 18 30903463 30903463 C A CCDC178 Missense_Mutation p.E338D 0.25 tolerated(0.31) benign(0.023) TCGA-CK-5916-01 18 3100421 3100421 C T MYOM1 Silent p.T1193T 0.33 TCGA-CK-5916-01 18 33734811 33734812 AG - ELP2 Splice_Site p.X442_splice 0.26 TCGA-CK-5916-01 18 34297998 34297998 C T FHOD3 Nonsense_Mutation p.Q738* 0.35 TCGA-CK-5916-01 18 346510 346510 C T COLEC12 Missense_Mutation p.C371Y 0.31 deleterious(0) probably_damaging(0.962) TCGA-CK-5916-01 18 43447631 43447631 T C EPG5 Missense_Mutation p.D2103G 0.31 tolerated(0.17) probably_damaging(0.981) TCGA-CK-5916-01 18 43666424 43666424 G A ATP5A1 Missense_Mutation p.R405C 0.29 deleterious_low_confidence(0.01) benign(0.329) TCGA-CK-5916-01 18 44104524 44104524 G A LOXHD1 Missense_Mutation p.A483V 0.26 tolerated(0.13) possibly_damaging(0.872) TCGA-CK-5916-01 18 44171911 44171911 G A LOXHD1 Missense_Mutation p.R547C 0.29 tolerated(0.05) probably_damaging(0.942) TCGA-CK-5916-01 18 45556085 45556085 C T ZBTB7C Missense_Mutation p.R469H 0.38 deleterious(0.02) benign(0.271) TCGA-CK-5916-01 18 48575150 48575150 G A SMAD4 Missense_Mutation p.C115Y 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 18 50432645 50432645 G A DCC Missense_Mutation p.R215Q 0.29 tolerated(0.12) benign(0.002) TCGA-CK-5916-01 18 5291118 5291118 G A ZBTB14 Silent p.C363C 0.24 TCGA-CK-5916-01 18 55024404 55024404 G A ST8SIA3 Missense_Mutation p.R188H 0.34 probably_damaging(1) TCGA-CK-5916-01 18 57364570 57364570 A G CCBE1 Missense_Mutation p.V2A 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-CK-5916-01 18 5969488 5969488 A - L3MBTL4 Frame_Shift_Del p.R516Gfs*63 0.39 TCGA-CK-5916-01 18 61377432 61377432 G A SERPINB11 Missense_Mutation p.G2D 0.33 tolerated(1) benign(0.004) TCGA-CK-5916-01 18 61569665 61569665 T C SERPINB2 Missense_Mutation p.Y236H 0.27 tolerated(0.33) benign(0.015) TCGA-CK-5916-01 18 633426 633426 C T CLUL1 Silent p.L329L 0.27 TCGA-CK-5916-01 18 6887191 6887191 C T ARHGAP28 Missense_Mutation p.H338Y 0.28 deleterious(0) possibly_damaging(0.703) TCGA-CK-5916-01 18 6959404 6959404 G A LAMA1 Missense_Mutation p.H2572Y 0.31 deleterious(0.01) possibly_damaging(0.633) TCGA-CK-5916-01 18 74692234 74692234 C T RP11-862L9.3 5'Flank 0.21 TCGA-CK-5916-01 18 77170567 77170567 G A NFATC1 Missense_Mutation p.A85T 0.22 tolerated(0.27) benign(0.01) TCGA-CK-5916-01 19 10108792 10108792 C T COL5A3 Missense_Mutation p.A382T 0.33 unknown(0) TCGA-CK-5916-01 19 1012527 1012527 C T TMEM259 Missense_Mutation p.G218D 0.22 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 19 10224349 10224349 C T PPAN-P2RY11 Silent p.D440D 0.33 TCGA-CK-5916-01 19 10465196 10465196 G A TYK2 Silent p.L903L 0.37 TCGA-CK-5916-01 19 10514061 10514061 C A CDC37 Missense_Mutation p.R32L 0.39 deleterious(0) possibly_damaging(0.619) TCGA-CK-5916-01 19 1078042 1078042 A - HMHA1 Frame_Shift_Del p.K474Rfs*28 0.36 TCGA-CK-5916-01 19 11546919 11546919 G A PRKCSH 5'UTR 0.22 TCGA-CK-5916-01 19 11558389 11558391 GAG - PRKCSH In_Frame_Del p.E333del 0.18 TCGA-CK-5916-01 19 1220590 1220590 C T STK11 Missense_Mutation p.P203L 0.38 tolerated(0.64) benign(0.201) TCGA-CK-5916-01 19 12256160 12256160 T - ZNF625 Frame_Shift_Del p.K357Nfs*? 0.27 TCGA-CK-5916-01 19 12775711 12775711 C T MAN2B1 Silent p.G175G 0.30 TCGA-CK-5916-01 19 12790663 12790663 C T DHPS Missense_Mutation p.G149D 0.32 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 19 12865800 12865800 C T BEST2 Silent p.R197R 0.26 TCGA-CK-5916-01 19 12976256 12976256 G A MAST1 Missense_Mutation p.G589R 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 19 1399129 1399129 T C GAMT Missense_Mutation p.K153E 0.30 tolerated(0.25) benign(0.085) TCGA-CK-5916-01 19 14070176 14070176 G A DCAF15 Silent p.T368T 0.32 TCGA-CK-5916-01 19 14273961 14273961 C T LPHN1 Missense_Mutation p.V223I 0.28 tolerated(0.14) benign(0.154) TCGA-CK-5916-01 19 14512321 14512321 C A CD97 Missense_Mutation p.L341M 0.21 tolerated(0.06) probably_damaging(0.994) TCGA-CK-5916-01 19 14513556 14513556 C T CD97 Missense_Mutation p.A444V 0.32 deleterious(0.02) possibly_damaging(0.616) TCGA-CK-5916-01 19 14677622 14677622 G A NDUFB7 Missense_Mutation p.A79V 0.31 deleterious(0.03) possibly_damaging(0.811) TCGA-CK-5916-01 19 1468471 1468471 T C APC2 Missense_Mutation p.L1724P 0.23 possibly_damaging(0.653) TCGA-CK-5916-01 19 14815982 14815982 G A ZNF333 Silent p.T141T 0.27 TCGA-CK-5916-01 19 15224693 15224693 G A SYDE1 Silent p.P709P 0.31 TCGA-CK-5916-01 19 15226826 15226826 G A ILVBL Missense_Mutation p.R510W 0.33 deleterious(0.03) benign(0.047) TCGA-CK-5916-01 19 15491206 15491208 CTC - AKAP8L In_Frame_Del p.E556del 0.38 TCGA-CK-5916-01 19 1615719 1615719 T C TCF3 Missense_Mutation p.K518E 0.31 tolerated(0.11) benign(0.003) TCGA-CK-5916-01 19 16799198 16799198 G A TMEM38A 3'UTR 0.19 TCGA-CK-5916-01 19 17039884 17039884 C - CPAMD8 Frame_Shift_Del p.H1052Ifs*127 0.31 TCGA-CK-5916-01 19 17394527 17394527 C T ANKLE1 Silent p.H318H 0.39 TCGA-CK-5916-01 19 17438263 17438263 G A ANO8 Missense_Mutation p.S845L 0.34 tolerated(1) possibly_damaging(0.488) TCGA-CK-5916-01 19 17836781 17836781 C - MAP1S Frame_Shift_Del p.P198Rfs*93 0.47 TCGA-CK-5916-01 19 17837854 17837854 C T MAP1S Missense_Mutation p.T554M 0.38 tolerated(0.13) benign(0.401) TCGA-CK-5916-01 19 18308384 18308386 TCT - RAB3A In_Frame_Del p.K186del 0.29 TCGA-CK-5916-01 19 18538198 18538198 G T SSBP4 Missense_Mutation p.G33C 0.41 deleterious(0) probably_damaging(0.974) TCGA-CK-5916-01 19 18700243 18700243 G A C19orf60 Missense_Mutation p.G68D 0.28 deleterious_low_confidence(0) benign(0.277) TCGA-CK-5916-01 19 18731289 18731289 C T TMEM59L Silent p.H324H 0.41 TCGA-CK-5916-01 19 18879459 18879460 - C CRTC1 Frame_Shift_Ins p.G411Wfs*56 0.29 TCGA-CK-5916-01 19 19217173 19217173 T C SLC25A42 Missense_Mutation p.M159T 0.41 deleterious(0) probably_damaging(0.948) TCGA-CK-5916-01 19 19257410 19257410 G A MEF2B Silent p.P241P 0.37 TCGA-CK-5916-01 19 19749117 19749117 G A GMIP Missense_Mutation p.R214W 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 19 19764640 19764640 C T ATP13A1 Missense_Mutation p.V685I 0.30 deleterious(0.04) benign(0.23) TCGA-CK-5916-01 19 1997441 1997441 G A BTBD2 Silent p.S143S 0.36 TCGA-CK-5916-01 19 20002392 20002392 A - ZNF253 Frame_Shift_Del p.G115Afs*22 0.26 TCGA-CK-5916-01 19 20044337 20044337 T C ZNF93 Silent p.H191H 0.18 TCGA-CK-5916-01 19 20045159 20045159 C T ZNF93 Silent p.S465S 0.29 TCGA-CK-5916-01 19 20116913 20116913 T C ZNF682 Silent p.S466S 0.17 TCGA-CK-5916-01 19 20188862 20188862 T C ZNF90 5'UTR 0.26 TCGA-CK-5916-01 19 2102190 2102190 C T AP3D1 Silent p.A1210A 0.37 TCGA-CK-5916-01 19 22272250 22272250 A - ZNF257 3'UTR 0.26 TCGA-CK-5916-01 19 22363595 22363595 G T ZNF676 Silent p.P308P 0.20 TCGA-CK-5916-01 19 2269537 2269537 A G OAZ1 5'UTR 0.15 TCGA-CK-5916-01 19 2762512 2762512 G T SGTA Missense_Mutation p.P210T 0.21 tolerated(0.15) benign(0.023) TCGA-CK-5916-01 19 2767191 2767191 C T SGTA Missense_Mutation p.A79T 0.30 tolerated(0.46) benign(0.001) TCGA-CK-5916-01 19 3015694 3015694 C T TLE2 Missense_Mutation p.G212D 0.22 tolerated(0.22) benign(0.01) TCGA-CK-5916-01 19 33481511 33481511 G A RHPN2 Missense_Mutation p.T570M 0.32 deleterious(0.04) possibly_damaging(0.63) TCGA-CK-5916-01 19 33490501 33490501 G T RHPN2 Silent p.R406R 0.10 TCGA-CK-5916-01 19 33878323 33878323 C T PEPD Missense_Mutation p.R470H 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 19 3474778 3474778 C A C19orf77 3'UTR 0.28 TCGA-CK-5916-01 19 34857702 34857702 C T GPI Silent p.G115G 0.22 TCGA-CK-5916-01 19 34890881 34890881 C T GPI Silent p.D550D 0.28 TCGA-CK-5916-01 19 34945422 34945422 A T UBA2 Silent p.G402G 0.29 TCGA-CK-5916-01 19 35434444 35434444 G C ZNF30 Missense_Mutation p.V193L 0.34 tolerated(0.23) benign(0.062) TCGA-CK-5916-01 19 35613898 35613898 G C FXYD3 Intron 0.41 TCGA-CK-5916-01 19 35761388 35761388 G A USF2 Silent p.P156P 0.32 TCGA-CK-5916-01 19 35803222 35803222 C A MAG Intron 0.38 TCGA-CK-5916-01 19 35832623 35832623 G A CD22 Missense_Mutation p.R597H 0.32 tolerated(0.09) benign(0.125) TCGA-CK-5916-01 19 35837547 35837547 G A CD22 Missense_Mutation p.G831R 0.26 tolerated(0.06) possibly_damaging(0.572) TCGA-CK-5916-01 19 3599960 3599960 C T TBXA2R Missense_Mutation p.V225I 0.28 tolerated(0.08) possibly_damaging(0.615) TCGA-CK-5916-01 19 36223002 36223002 G - KMT2B Frame_Shift_Del p.G1879Vfs*16 0.34 TCGA-CK-5916-01 19 36387701 36387701 C T NFKBID Missense_Mutation p.R62H 0.38 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 19 36515356 36515356 A G CLIP3 Missense_Mutation p.L287P 0.30 tolerated(0.23) possibly_damaging(0.564) TCGA-CK-5916-01 19 36605285 36605285 G T POLR2I Silent p.A48A 0.32 TCGA-CK-5916-01 19 37118463 37118463 T - ZNF382 3'UTR 0.22 TCGA-CK-5916-01 19 3759854 3759854 G - APBA3 Frame_Shift_Del p.R137Dfs*45 0.40 TCGA-CK-5916-01 19 37676439 37676439 C T ZNF585B Missense_Mutation p.C667Y 0.27 deleterious(0.01) probably_damaging(1) TCGA-CK-5916-01 19 37975130 37975130 T A ZNF570 Missense_Mutation p.N202K 0.20 tolerated(0.3) benign(0) TCGA-CK-5916-01 19 3805993 3805993 G A ZFR2 Missense_Mutation p.A925V 0.29 tolerated(0.13) unknown(0) TCGA-CK-5916-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.22 TCGA-CK-5916-01 19 38376035 38376035 T - WDR87 Frame_Shift_Del p.K2720Rfs*57 0.24 TCGA-CK-5916-01 19 38572704 38572704 C T SIPA1L3 Missense_Mutation p.R167W 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 19 38746850 38746850 G A PPP1R14A Missense_Mutation p.R44W 0.39 deleterious(0) probably_damaging(0.994) TCGA-CK-5916-01 19 39219724 39219724 C T ACTN4 Missense_Mutation p.S836L 0.32 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 19 39329110 39329110 C T HNRNPL Missense_Mutation p.R495H 0.39 deleterious(0.04) benign(0.005) TCGA-CK-5916-01 19 39398353 39398353 C T NFKBIB Intron 0.25 TCGA-CK-5916-01 19 39868167 39868167 C T SAMD4B Silent p.L383L 0.35 TCGA-CK-5916-01 19 40373972 40373972 C T FCGBP Missense_Mutation p.G4036R 0.21 probably_damaging(0.989) TCGA-CK-5916-01 19 40704317 40704317 G A MAP3K10 Missense_Mutation p.A240T 0.31 tolerated(0.34) benign(0.004) TCGA-CK-5916-01 19 41097117 41097117 A G SHKBP1 3'UTR 0.25 TCGA-CK-5916-01 19 41129601 41129601 G A LTBP4 Missense_Mutation p.G1283S 0.32 tolerated(0.05) probably_damaging(0.987) TCGA-CK-5916-01 19 41925162 41925162 G A BCKDHA Missense_Mutation p.V203I 0.33 tolerated(0.41) benign(0.155) TCGA-CK-5916-01 19 42410689 42410689 G - ARHGEF1 Frame_Shift_Del p.G874Afs*4 0.35 TCGA-CK-5916-01 19 42482363 42482363 G A ATP1A3 Silent p.I595I 0.25 TCGA-CK-5916-01 19 42736742 42736742 G T GSK3A Silent p.A397A 0.34 TCGA-CK-5916-01 19 42753178 42753178 G T ERF Silent p.S362S 0.42 TCGA-CK-5916-01 19 42841030 42841030 G A MEGF8 Missense_Mutation p.R439Q 0.27 tolerated(0.14) possibly_damaging(0.806) TCGA-CK-5916-01 19 42854308 42854310 CTT - MEGF8 In_Frame_Del p.F772del 0.24 TCGA-CK-5916-01 19 42861055 42861055 G - MEGF8 Frame_Shift_Del p.G1519Dfs*144 0.42 TCGA-CK-5916-01 19 43519265 43519265 T A PSG11 Intron 0.12 TCGA-CK-5916-01 19 44118037 44118037 C T SRRM5 Silent p.S588S 0.23 TCGA-CK-5916-01 19 44174247 44174247 A G PLAUR Missense_Mutation p.L9P 0.25 tolerated(0.08) probably_damaging(0.979) TCGA-CK-5916-01 19 44679196 44679196 T C ZNF226 Intron 0.37 TCGA-CK-5916-01 19 4475538 4475538 G T HDGFRP2 Missense_Mutation p.W82C 0.18 deleterious(0) possibly_damaging(0.878) TCGA-CK-5916-01 19 45211204 45211204 G A CEACAM16 Missense_Mutation p.V338M 0.27 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 19 45406156 45406156 C T TOMM40 Intron 0.26 TCGA-CK-5916-01 19 4550844 4550844 G A SEMA6B Missense_Mutation p.T363M 0.31 deleterious(0) probably_damaging(0.954) TCGA-CK-5916-01 19 45540749 45540749 G A RELB Missense_Mutation p.G481R 0.31 deleterious_low_confidence(0.02) benign(0.106) TCGA-CK-5916-01 19 45656522 45656522 C - NKPD1 Frame_Shift_Del p.L392Cfs*14 0.28 TCGA-CK-5916-01 19 46128026 46128026 G A EML2 Silent p.G465G 0.31 TCGA-CK-5916-01 19 46271429 46271429 T C SIX5 Missense_Mutation p.Y225C 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 19 46280799 46280799 C T DMPK Missense_Mutation p.R321Q 0.29 tolerated(0.35) benign(0.003) TCGA-CK-5916-01 19 46281850 46281850 C A DMPK Missense_Mutation p.S171I 0.29 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 19 46916678 46916678 C T CCDC8 5'UTR 0.24 TCGA-CK-5916-01 19 46997862 46997863 - T PNMAL2 Frame_Shift_Ins p.N287Kfs*43 0.25 TCGA-CK-5916-01 19 46998850 46998850 G A PNMAL2 5'UTR 0.27 TCGA-CK-5916-01 19 48024387 48024387 G - ZNF541 3'UTR 0.45 TCGA-CK-5916-01 19 48220133 48220133 G - EHD2 Frame_Shift_Del p.P90Lfs*76 0.26 TCGA-CK-5916-01 19 4839137 4839137 C T PLIN3 3'UTR 0.38 TCGA-CK-5916-01 19 48967677 48967677 G A KCNJ14 Silent p.S318S 0.36 TCGA-CK-5916-01 19 49141286 49141286 C T CA11 3'UTR 0.26 TCGA-CK-5916-01 19 49148947 49148947 T A CA11 5'UTR 0.25 TCGA-CK-5916-01 19 49253905 49253905 G A FUT1 Missense_Mutation p.R212C 0.32 tolerated(0.19) benign(0.067) TCGA-CK-5916-01 19 49339769 49339769 G A HSD17B14 5'UTR 0.27 TCGA-CK-5916-01 19 4954773 4954773 C T UHRF1 RNA 0.34 TCGA-CK-5916-01 19 49898432 49898432 G A CCDC155 Missense_Mutation p.R73H 0.25 tolerated(0.15) benign(0.105) TCGA-CK-5916-01 19 50028758 50028758 G A FCGRT Missense_Mutation p.G306S 0.29 tolerated(0.07) benign(0.046) TCGA-CK-5916-01 19 50099984 50099984 C - PRR12 Frame_Shift_Del p.Q800Sfs*100 0.26 TCGA-CK-5916-01 19 50249927 50249927 C T TSKS Silent p.P264P 0.38 TCGA-CK-5916-01 19 50918125 50918127 CTC - POLD1 In_Frame_Del p.S816del 0.29 TCGA-CK-5916-01 19 50919050 50919050 C T POLD1 Silent p.A929A 0.21 TCGA-CK-5916-01 19 51228664 51228664 C T CLEC11A Silent p.G304G 0.38 TCGA-CK-5916-01 19 51504365 51504365 C - KLK8 Frame_Shift_Del p.G20Efs*25 0.33 TCGA-CK-5916-01 19 51728732 51728732 A T CD33 Missense_Mutation p.N99I 0.35 tolerated(0.29) possibly_damaging(0.862) TCGA-CK-5916-01 19 5244243 5244243 G - PTPRS Frame_Shift_Del p.S414Afs*30 0.36 TCGA-CK-5916-01 19 52942329 52942329 G A ZNF534 Missense_Mutation p.R552Q 0.22 tolerated(0.67) benign(0.097) TCGA-CK-5916-01 19 53384631 53384631 A C ZNF320 Missense_Mutation p.C250G 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 19 53884941 53884941 T C ZNF525 Missense_Mutation p.L370P 0.33 deleterious(0) probably_damaging(0.949) TCGA-CK-5916-01 19 53994607 53994607 A G ZNF813 Missense_Mutation p.H374R 0.17 tolerated(0.43) benign(0.006) TCGA-CK-5916-01 19 54079959 54079959 T C ZNF331 Missense_Mutation p.S49P 0.26 deleterious(0.03) probably_damaging(0.91) TCGA-CK-5916-01 19 54410349 54410349 G A PRKCG 3'UTR 0.55 TCGA-CK-5916-01 19 54876446 54876446 C T LAIR1 5'UTR 0.23 TCGA-CK-5916-01 19 55224639 55224639 G A LILRP2 RNA 0.37 TCGA-CK-5916-01 19 55593175 55593175 G T EPS8L1 Missense_Mutation p.S270I 0.24 tolerated(0.4) benign(0.005) TCGA-CK-5916-01 19 56370017 56370017 C T NLRP4 Missense_Mutation p.R420W 0.32 deleterious(0) benign(0.23) TCGA-CK-5916-01 19 5661569 5661569 G T SAFB Missense_Mutation p.A635S 0.34 tolerated(0.18) unknown(0) TCGA-CK-5916-01 19 56701668 56701668 C T ZSCAN5B Missense_Mutation p.G339D 0.35 tolerated(0.3) benign(0.004) TCGA-CK-5916-01 19 57908436 57908436 C T ZNF548 Silent p.D24D 0.32 TCGA-CK-5916-01 19 58049396 58049396 C T ZNF549 Missense_Mutation p.R342C 0.31 tolerated(0.05) benign(0.38) TCGA-CK-5916-01 19 58118627 58118627 T C ZNF530 Silent p.S578S 0.29 TCGA-CK-5916-01 19 58639527 58639527 A G ZNF329 Silent p.T448T 0.27 TCGA-CK-5916-01 19 6457575 6457575 G A SLC25A23 Nonsense_Mutation p.Q104* 0.38 TCGA-CK-5916-01 19 6475730 6475730 G A DENND1C Missense_Mutation p.A271V 0.39 tolerated(0.15) benign(0.259) TCGA-CK-5916-01 19 7594070 7594072 CTT - MCOLN1 In_Frame_Del p.F408del 0.60 TCGA-CK-5916-01 19 7598426 7598426 C T MCOLN1 Silent p.G531G 0.42 TCGA-CK-5916-01 19 7697645 7697645 C A PCP2 Missense_Mutation p.Q41H 0.40 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 19 7763667 7763667 G A FCER2 Silent p.A32A 0.43 TCGA-CK-5916-01 19 8368780 8368780 C T CD320 Missense_Mutation p.G154D 0.26 deleterious(0.03) probably_damaging(0.993) TCGA-CK-5916-01 19 8563946 8563946 G A PRAM1 Missense_Mutation p.A249V 0.20 tolerated(1) benign(0.013) TCGA-CK-5916-01 19 8657723 8657723 T C ADAMTS10 Missense_Mutation p.K504R 0.29 tolerated(0.09) benign(0.301) TCGA-CK-5916-01 19 9076904 9076904 C T MUC16 Silent p.G3514G 0.34 TCGA-CK-5916-01 19 9082681 9082681 G A MUC16 Missense_Mutation p.P3045L 0.24 unknown(0) TCGA-CK-5916-01 19 9083298 9083298 A G MUC16 Silent p.A2839A 0.28 TCGA-CK-5916-01 19 9084743 9084743 G A MUC16 Missense_Mutation p.R2358W 0.28 unknown(0) TCGA-CK-5916-01 19 9086661 9086661 T C MUC16 Silent p.G1718G 0.25 TCGA-CK-5916-01 19 9296693 9296693 C A OR7D2 Missense_Mutation p.P79H 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-5916-01 1 100964710 100964710 C - CDC14A Frame_Shift_Del p.P551Qfs*30 0.30 TCGA-CK-5916-01 1 101006344 101006345 TT - GPR88 3'UTR 0.31 TCGA-CK-5916-01 1 101705419 101705419 G A S1PR1 Silent p.A293A 0.37 TCGA-CK-5916-01 1 10192468 10192468 C T UBE4B Silent p.G651G 0.30 TCGA-CK-5916-01 1 109794701 109794701 T C CELSR2 Missense_Mutation p.V667A 0.22 deleterious(0) possibly_damaging(0.489) TCGA-CK-5916-01 1 110590491 110590491 C T STRIP1 Missense_Mutation p.P554L 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5916-01 1 110593638 110593638 C T STRIP1 Missense_Mutation p.R673W 0.28 deleterious(0) probably_damaging(0.96) TCGA-CK-5916-01 1 111145889 111145889 C T KCNA2 3'UTR 0.30 TCGA-CK-5916-01 1 111741326 111741328 CTC - DENND2D In_Frame_Del p.E94del 0.31 TCGA-CK-5916-01 1 112045691 112045691 C T ADORA3 Missense_Mutation p.A96T 0.31 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-CK-5916-01 1 113084707 113084707 G A ST7L Missense_Mutation p.H499Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 1 113471890 113471890 G - SLC16A1 Frame_Shift_Del p.P14Qfs*10 0.32 TCGA-CK-5916-01 1 114424400 114424400 C T BCL2L15 Missense_Mutation p.G157S 0.38 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 1 11562075 11562076 - T PTCHD2 Frame_Shift_Ins p.P345Sfs*11 0.29 TCGA-CK-5916-01 1 11595684 11595684 C - PTCHD2 Frame_Shift_Del p.H1269Tfs*66 0.35 TCGA-CK-5916-01 1 117087042 117087043 AG - CD58 Frame_Shift_Del p.T85Sfs*4 0.30 TCGA-CK-5916-01 1 117644025 117644025 A G TTF2 Missense_Mutation p.E1123G 0.08 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 1 11836651 11836651 G A C1orf167 Silent p.A789A 0.30 TCGA-CK-5916-01 1 118486134 118486134 A G WDR3 Missense_Mutation p.R405G 0.29 tolerated(0.35) benign(0.015) TCGA-CK-5916-01 1 11980243 11980243 C T KIAA2013 3'UTR 0.31 TCGA-CK-5916-01 1 11983154 11983154 C T KIAA2013 Missense_Mutation p.V476M 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-CK-5916-01 1 12056371 12056371 C T MFN2 Missense_Mutation p.A157V 0.38 tolerated(1) benign(0.001) TCGA-CK-5916-01 1 1222262 1222262 C - SCNN1D Frame_Shift_Del p.R344Afs*17 0.32 TCGA-CK-5916-01 1 12267062 12267062 G A TNFRSF1B Silent p.G457G 0.35 TCGA-CK-5916-01 1 12429673 12429673 A C VPS13D Missense_Mutation p.N3575T 0.27 benign(0) TCGA-CK-5916-01 1 1268409 1268409 C T TAS1R3 Nonsense_Mutation p.Q462* 0.25 TCGA-CK-5916-01 1 1328168 1328168 A G CCNL2 Intron 0.17 TCGA-CK-5916-01 1 1356213 1356213 G A ANKRD65 Missense_Mutation p.T58M 0.33 tolerated(0.56) benign(0.029) TCGA-CK-5916-01 1 146685000 146685000 G A FMO5 Missense_Mutation p.A121V 0.37 deleterious(0.01) benign(0.026) TCGA-CK-5916-01 1 147231061 147231061 C T GJA5 Missense_Mutation p.A96T 0.32 tolerated(0.07) benign(0.382) TCGA-CK-5916-01 1 149916818 149916818 T C OTUD7B Silent p.R490R 0.32 TCGA-CK-5916-01 1 150484217 150484217 A G ECM1 Silent p.L358L 0.15 TCGA-CK-5916-01 1 151131319 151131319 A G TNFAIP8L2 Missense_Mutation p.Y49C 0.15 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 1 151288350 151288350 C T PI4KB Missense_Mutation p.R215H 0.24 deleterious(0) probably_damaging(0.979) TCGA-CK-5916-01 1 151314396 151314396 C A RFX5 3'UTR 0.19 TCGA-CK-5916-01 1 151789713 151789713 C T RORC Silent p.S38S 0.39 TCGA-CK-5916-01 1 151811331 151811331 C T C2CD4D Silent p.P45P 0.29 TCGA-CK-5916-01 1 152084789 152084789 G A TCHH Missense_Mutation p.R302C 0.29 unknown(0) TCGA-CK-5916-01 1 152275790 152275790 G A FLG Missense_Mutation p.R3858C 0.28 unknown(0) TCGA-CK-5916-01 1 153362640 153362640 A G S100A8 Missense_Mutation p.L74P 0.18 deleterious(0) probably_damaging(0.959) TCGA-CK-5916-01 1 154033468 154033468 C T NUP210L Missense_Mutation p.V900I 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-CK-5916-01 1 154155545 154155545 C T TPM3 Intron 0.45 TCGA-CK-5916-01 1 154313476 154313476 C T ATP8B2 Missense_Mutation p.T427M 0.27 deleterious(0) probably_damaging(0.917) TCGA-CK-5916-01 1 155227153 155227153 G A SCAMP3 Silent p.F234F 0.31 TCGA-CK-5916-01 1 155290965 155290965 C T RUSC1 Intron 0.24 TCGA-CK-5916-01 1 155732086 155732086 G A GON4L Silent p.S1602S 0.31 TCGA-CK-5916-01 1 1559290 1559290 C T MIB2 Silent p.H243H 0.30 TCGA-CK-5916-01 1 156038196 156038196 C T RAB25 Silent p.N125N 0.35 TCGA-CK-5916-01 1 156145439 156145439 C T SEMA4A Missense_Mutation p.P562L 0.32 deleterious(0.03) probably_damaging(0.943) TCGA-CK-5916-01 1 156262964 156262964 G A C1orf85 Silent p.D364D 0.32 TCGA-CK-5916-01 1 156553129 156553129 G A TTC24 Splice_Site p.X347_splice 0.32 TCGA-CK-5916-01 1 156714058 156714058 G A HDGF Missense_Mutation p.A145V 0.32 deleterious(0) benign(0.219) TCGA-CK-5916-01 1 15675593 15675593 C T FHAD1 Missense_Mutation p.S779L 0.23 tolerated(0.3) benign(0.003) TCGA-CK-5916-01 1 157490960 157490961 - A FCRL5 Frame_Shift_Ins p.H788Sfs*2 0.26 TCGA-CK-5916-01 1 15905401 15905401 G A AGMAT Missense_Mutation p.R225W 0.38 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 1 159785567 159785567 G T FCRL6 3'Flank 0.56 TCGA-CK-5916-01 1 160054532 160054532 C T KCNJ9 Missense_Mutation p.R238C 0.19 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 1 160607128 160607128 G A SLAMF1 Missense_Mutation p.R90C 0.38 tolerated(0.07) possibly_damaging(0.764) TCGA-CK-5916-01 1 160681485 160681487 CAC - CD48 In_Frame_Del p.V23del 0.41 TCGA-CK-5916-01 1 161017126 161017126 C T ARHGAP30 3'UTR 0.38 TCGA-CK-5916-01 1 161135341 161135341 G A USP21 3'UTR 0.54 TCGA-CK-5916-01 1 161165390 161165390 G A ADAMTS4 Missense_Mutation p.P376S 0.30 tolerated(0.56) benign(0.003) TCGA-CK-5916-01 1 161495037 161495037 G A HSPA6 Missense_Mutation p.V197M 0.33 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-CK-5916-01 1 16258894 16258894 C - SPEN Frame_Shift_Del p.P2055Lfs*9 0.23 TCGA-CK-5916-01 1 165651348 165651348 G T ALDH9A1 Silent p.A196A 0.25 TCGA-CK-5916-01 1 166819159 166819159 A G POGK Missense_Mutation p.D448G 0.33 tolerated(0.08) probably_damaging(0.989) TCGA-CK-5916-01 1 16809891 16809891 C A CROCCP3 RNA 0.24 TCGA-CK-5916-01 1 169823946 169823946 A G SCYL3 Missense_Mutation p.I545T 0.26 tolerated(0.17) benign(0.009) TCGA-CK-5916-01 1 171244576 171244576 C T FMO1 Missense_Mutation p.A138V 0.20 tolerated(0.33) possibly_damaging(0.751) TCGA-CK-5916-01 1 171810828 171810828 C A DNM3 Missense_Mutation p.P11Q 0.25 deleterious(0.02) probably_damaging(0.973) TCGA-CK-5916-01 1 17248507 17248507 C - CROCC 5'UTR 0.21 TCGA-CK-5916-01 1 17312733 17312733 C T ATP13A2 Missense_Mutation p.A1176T 0.30 tolerated_low_confidence(0.85) benign(0.004) TCGA-CK-5916-01 1 17323539 17323539 C T ATP13A2 Missense_Mutation p.V391I 0.38 deleterious(0.03) possibly_damaging(0.803) TCGA-CK-5916-01 1 175372551 175372551 C T TNR Missense_Mutation p.R234Q 0.28 tolerated(0.16) benign(0.042) TCGA-CK-5916-01 1 176564270 176564270 C A PAPPA2 Silent p.I510I 0.32 TCGA-CK-5916-01 1 176927517 176927517 G A ASTN1 Missense_Mutation p.T567M 0.29 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 1 177250622 177250622 G A BRINP2 Silent p.L770L 0.36 TCGA-CK-5916-01 1 178412041 178412041 A - RASAL2 Frame_Shift_Del p.K389Rfs*7 0.28 TCGA-CK-5916-01 1 179398728 179398728 C T AXDND1 Missense_Mutation p.H436Y 0.21 tolerated(0.06) benign(0.403) TCGA-CK-5916-01 1 17965158 17965158 G A ARHGEF10L Silent p.R715R 0.26 TCGA-CK-5916-01 1 180794316 180794316 G T XPR1 Missense_Mutation p.G324W 0.25 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 1 181721320 181721320 G A CACNA1E Missense_Mutation p.R1258Q 0.29 deleterious(0) possibly_damaging(0.863) TCGA-CK-5916-01 1 182545478 182545479 - T RNASEL Frame_Shift_Ins p.R651Kfs*11 0.17 TCGA-CK-5916-01 1 186281647 186281647 C T TPR 3'UTR 0.47 TCGA-CK-5916-01 1 186901925 186901925 G - PLA2G4A Frame_Shift_Del p.G198Vfs*11 0.25 TCGA-CK-5916-01 1 18962798 18962798 G A PAX7 Silent p.A173A 0.31 TCGA-CK-5916-01 1 19180711 19180711 C A TAS1R2 Missense_Mutation p.W418L 0.28 deleterious(0) probably_damaging(0.98) TCGA-CK-5916-01 1 192545027 192545027 C T RGS1 Silent p.D35D 0.29 TCGA-CK-5916-01 1 196311352 196311352 G A KCNT2 Silent p.G470G 0.36 TCGA-CK-5916-01 1 196715101 196715101 A G CFH Silent p.G1155G 0.34 TCGA-CK-5916-01 1 196977770 196977770 C A CFHR5 Missense_Mutation p.A556E 0.27 deleterious(0.03) possibly_damaging(0.462) TCGA-CK-5916-01 1 197094022 197094022 C T ASPM Nonsense_Mutation p.W1049* 0.26 TCGA-CK-5916-01 1 197094265 197094265 G A ASPM Missense_Mutation p.P998L 0.24 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 1 202097045 202097045 G A GPR37L1 Silent p.L269L 0.31 TCGA-CK-5916-01 1 202245515 202245515 C T LGR6 Silent p.D170D 0.35 TCGA-CK-5916-01 1 203022921 203022921 C T PPFIA4 Missense_Mutation p.A48V 0.39 tolerated(1) benign(0.017) TCGA-CK-5916-01 1 203743623 203743623 G T LAX1 Missense_Mutation p.R337S 0.28 deleterious(0.02) probably_damaging(0.978) TCGA-CK-5916-01 1 20517948 20517948 T C UBXN10 3'UTR 0.32 TCGA-CK-5916-01 1 205225345 205225345 C T TMCC2 Intron 0.50 TCGA-CK-5916-01 1 205890928 205890928 G - SLC26A9 Frame_Shift_Del p.T608Pfs*62 0.34 TCGA-CK-5916-01 1 205896413 205896413 C T SLC26A9 Missense_Mutation p.A407T 0.27 deleterious(0) probably_damaging(0.96) TCGA-CK-5916-01 1 206567031 206567031 G A SRGAP2 Splice_Site p.X191_splice 0.10 TCGA-CK-5916-01 1 206902749 206902749 G A MAPKAPK2 Missense_Mutation p.E165K 0.32 tolerated(0.17) benign(0.064) TCGA-CK-5916-01 1 207040758 207040758 G T IL20 Missense_Mutation p.E136D 0.31 deleterious(0.03) possibly_damaging(0.755) TCGA-CK-5916-01 1 207076471 207076471 C A IL24 3'UTR 0.29 TCGA-CK-5916-01 1 207087229 207087229 C T FAIM3 Missense_Mutation p.R83H 0.33 tolerated(0.08) benign(0.003) TCGA-CK-5916-01 1 207696973 207696973 C - CR1 Frame_Shift_Del p.T171Pfs*21 0.27 TCGA-CK-5916-01 1 207933016 207933016 G A CD46 Missense_Mutation p.C141Y 0.31 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 1 211923141 211923141 T - LPGAT1 3'UTR 0.23 TCGA-CK-5916-01 1 212119977 212119977 A - INTS7 Frame_Shift_Del p.F796Sfs*34 0.25 TCGA-CK-5916-01 1 215256769 215256769 C A KCNK2 Missense_Mutation p.A14E 0.36 tolerated_low_confidence(0.57) benign(0.003) TCGA-CK-5916-01 1 215901377 215901377 C A USH2A Missense_Mutation p.V4021L 0.34 possibly_damaging(0.901) TCGA-CK-5916-01 1 215940045 215940045 C A USH2A Missense_Mutation p.Q3675H 0.34 benign(0.013) TCGA-CK-5916-01 1 220864046 220864046 A G C1orf115 Missense_Mutation p.Y101C 0.11 tolerated(0.15) benign(0.001) TCGA-CK-5916-01 1 22150884 22150884 C - LDLRAD2 3'UTR 0.25 TCGA-CK-5916-01 1 222838837 222838837 C T MIA3 Missense_Mutation p.P1867L 0.30 tolerated(0.08) probably_damaging(0.989) TCGA-CK-5916-01 1 225334841 225334841 A G DNAH14 Silent p.S688S 0.34 TCGA-CK-5916-01 1 226420671 226420671 C T LIN9 Intron 0.36 TCGA-CK-5916-01 1 227076603 227076603 G A PSEN2 Missense_Mutation p.V214M 0.32 tolerated(0.16) probably_damaging(0.955) TCGA-CK-5916-01 1 227170437 227170437 G A ADCK3 Silent p.A304A 0.32 TCGA-CK-5916-01 1 228111954 228111954 C - WNT9A Frame_Shift_Del p.G167Afs*38 0.31 TCGA-CK-5916-01 1 228468111 228468111 T C OBSCN Missense_Mutation p.L3061P 0.22 benign(0.005) TCGA-CK-5916-01 1 228481984 228481984 G A OBSCN Missense_Mutation p.G4184R 0.31 probably_damaging(1) TCGA-CK-5916-01 1 228547773 228547773 G A OBSCN Intron 0.35 TCGA-CK-5916-01 1 230928659 230928659 G A CAPN9 Missense_Mutation p.A619T 0.35 deleterious(0.01) benign(0.031) TCGA-CK-5916-01 1 231410983 231410983 T C GNPAT Missense_Mutation p.L587P 0.33 deleterious(0) probably_damaging(0.986) TCGA-CK-5916-01 1 232144685 232144685 C - DISC1 Frame_Shift_Del p.R735Gfs*12 0.30 TCGA-CK-5916-01 1 23237052 23237052 G A EPHB2 Missense_Mutation p.A895T 0.33 tolerated(0.31) benign(0.002) TCGA-CK-5916-01 1 233275579 233275580 - A PCNXL2 Frame_Shift_Ins p.E1181Rfs*11 0.24 TCGA-CK-5916-01 1 233388513 233388513 T - PCNXL2 Frame_Shift_Del p.K619Rfs*52 0.23 TCGA-CK-5916-01 1 236883484 236883484 G A ACTN2 Silent p.S147S 0.30 TCGA-CK-5916-01 1 236924422 236924422 C T ACTN2 Silent p.T825T 0.38 TCGA-CK-5916-01 1 236924444 236924444 G A ACTN2 Missense_Mutation p.A833T 0.34 tolerated(0.11) probably_damaging(0.999) TCGA-CK-5916-01 1 237754222 237754222 G A RYR2 Missense_Mutation p.E1364K 0.31 benign(0.002) TCGA-CK-5916-01 1 237872290 237872290 G - RYR2 Frame_Shift_Del p.D3347Tfs*10 0.31 TCGA-CK-5916-01 1 240255627 240255627 C T FMN2 Missense_Mutation p.S73L 0.35 unknown(0) TCGA-CK-5916-01 1 240492736 240492736 C A FMN2 Missense_Mutation p.R1469S 0.31 benign(0.304) TCGA-CK-5916-01 1 24189731 24189734 GAGT - FUCA1 Frame_Shift_Del p.L185* 0.46 TCGA-CK-5916-01 1 243336050 243336050 T C CEP170 Silent p.A555A 0.28 TCGA-CK-5916-01 1 245849093 245849093 C T KIF26B Silent p.I936I 0.47 TCGA-CK-5916-01 1 247200671 247200671 C T ZNF670 3'UTR 0.33 TCGA-CK-5916-01 1 247582321 247582321 C T NLRP3 Silent p.F75F 0.27 TCGA-CK-5916-01 1 248202429 248202429 T A OR2L2 Missense_Mutation p.I287N 0.29 deleterious(0) possibly_damaging(0.77) TCGA-CK-5916-01 1 248756195 248756195 A C OR2T10 Missense_Mutation p.F292C 0.31 deleterious(0) possibly_damaging(0.664) TCGA-CK-5916-01 1 248814008 248814008 A G OR2T27 Missense_Mutation p.Y60H 0.20 deleterious(0) probably_damaging(0.992) TCGA-CK-5916-01 1 25072043 25072043 C A CLIC4 5'UTR 0.22 TCGA-CK-5916-01 1 26872506 26872506 T C RPS6KA1 Missense_Mutation p.S39P 0.29 tolerated(0.15) benign(0) TCGA-CK-5916-01 1 27190848 27190857 GTGTGTGTGC - SFN 3'UTR 0.21 TCGA-CK-5916-01 1 27878359 27878359 G A AHDC1 Missense_Mutation p.R90C 0.29 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-CK-5916-01 1 28282474 28282474 G A SMPDL3B Missense_Mutation p.A296T 0.24 tolerated(0.77) benign(0.001) TCGA-CK-5916-01 1 29585804 29585804 G A PTPRU Missense_Mutation p.R170H 0.31 tolerated(0.79) benign(0.02) TCGA-CK-5916-01 1 3102721 3102721 C T PRDM16 Missense_Mutation p.P24S 0.25 tolerated_low_confidence(0.09) benign(0.004) TCGA-CK-5916-01 1 31347299 31347299 A G SDC3 Missense_Mutation p.V336A 0.32 deleterious(0.02) unknown(0) TCGA-CK-5916-01 1 32712886 32712886 T C FAM167B 5'UTR 0.26 TCGA-CK-5916-01 1 32828185 32828185 C T TSSK3 5'UTR 0.24 TCGA-CK-5916-01 1 3328413 3328414 - G PRDM16 Frame_Shift_Ins p.N553Efs*51 0.45 TCGA-CK-5916-01 1 3350278 3350278 C A PRDM16 Missense_Mutation p.P1245H 0.29 deleterious(0) possibly_damaging(0.738) TCGA-CK-5916-01 1 35578898 35578898 C T ZMYM1 Silent p.S489S 0.31 TCGA-CK-5916-01 1 40557012 40557012 C - PPT1 Frame_Shift_Del p.G141Dfs*27 0.24 TCGA-CK-5916-01 1 41215348 41215348 G A NFYC Missense_Mutation p.R94Q 0.27 deleterious(0.04) probably_damaging(0.993) TCGA-CK-5916-01 1 41304174 41304174 G A KCNQ4 Silent p.S689S 0.27 TCGA-CK-5916-01 1 43613606 43613606 C T FAM183A 5'Flank 0.38 TCGA-CK-5916-01 1 43748388 43748388 C T C1orf210 3'UTR 0.25 TCGA-CK-5916-01 1 43814531 43814532 - G MPL Frame_Shift_Ins p.A444Gfs*39 0.31 TCGA-CK-5916-01 1 44685836 44685836 G A DMAP1 Missense_Mutation p.R400Q 0.41 tolerated(0.16) benign(0.131) TCGA-CK-5916-01 1 46083937 46083937 T - NASP 3'UTR 0.23 TCGA-CK-5916-01 1 46977843 46977843 G A DMBX1 Missense_Mutation p.A271T 0.32 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-CK-5916-01 1 48688526 48688526 G A SLC5A9 Missense_Mutation p.V40M 0.31 deleterious(0.01) possibly_damaging(0.875) TCGA-CK-5916-01 1 48695018 48695018 G A SLC5A9 Missense_Mutation p.A156T 0.32 tolerated(0.3) possibly_damaging(0.643) TCGA-CK-5916-01 1 49193673 49193673 G C BEND5 Missense_Mutation p.T384S 0.31 tolerated(0.16) benign(0.142) TCGA-CK-5916-01 1 53722909 53722909 T C LRP8 Intron 0.33 TCGA-CK-5916-01 1 55451845 55451845 G A TMEM61 Missense_Mutation p.G31R 0.34 deleterious(0) probably_damaging(0.991) TCGA-CK-5916-01 1 57189307 57189307 T - C1orf168 Frame_Shift_Del p.K643Rfs*4 0.26 TCGA-CK-5916-01 1 5926472 5926472 G T NPHP4 Missense_Mutation p.P1202Q 0.30 deleterious(0) probably_damaging(0.983) TCGA-CK-5916-01 1 62367097 62367097 C T INADL Missense_Mutation p.T1116M 0.29 deleterious(0) probably_damaging(0.986) TCGA-CK-5916-01 1 63113775 63113775 A G DOCK7 Splice_Site p.X244_splice 0.14 TCGA-CK-5916-01 1 6512109 6512109 C T ESPN Missense_Mutation p.R760C 0.14 deleterious(0) probably_damaging(0.953) TCGA-CK-5916-01 1 65858502 65858502 C T DNAJC6 Silent p.R619R 0.28 TCGA-CK-5916-01 1 6681491 6681491 G A PHF13 Missense_Mutation p.V233M 0.35 deleterious(0) probably_damaging(0.974) TCGA-CK-5916-01 1 6693019 6693019 A C THAP3 Missense_Mutation p.K201T 0.09 deleterious(0.01) possibly_damaging(0.798) TCGA-CK-5916-01 1 6693025 6693025 G A THAP3 Missense_Mutation p.R203Q 0.09 tolerated(0.07) benign(0.085) TCGA-CK-5916-01 1 67391892 67391892 G A MIER1 Silent p.L45L 0.33 TCGA-CK-5916-01 1 67518502 67518502 C A SLC35D1 Silent p.A92A 0.33 TCGA-CK-5916-01 1 67838404 67838404 G A IL12RB2 Missense_Mutation p.C552Y 0.24 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 1 74670361 74670361 T - FPGT Frame_Shift_Del p.F211Lfs*4 0.24 TCGA-CK-5916-01 1 77629565 77629565 C T PIGK Missense_Mutation p.A184T 0.27 deleterious(0.01) probably_damaging(0.937) TCGA-CK-5916-01 1 78429781 78429781 G A FUBP1 Missense_Mutation p.A336V 0.27 tolerated(0.31) possibly_damaging(0.896) TCGA-CK-5916-01 1 85570265 85570265 C T WDR63 Missense_Mutation p.T513I 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 1 85648449 85648449 A G SYDE2 Missense_Mutation p.S626P 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 1 86952228 86952228 G A CLCA1 Missense_Mutation p.R325Q 0.23 tolerated(0.09) probably_damaging(1) TCGA-CK-5916-01 1 89206848 89206848 A - PKN2 Frame_Shift_Del p.S78Vfs*5 0.24 TCGA-CK-5916-01 1 89448607 89448607 C T RBMXL1 Silent p.P301P 0.36 TCGA-CK-5916-01 1 89521907 89521907 T C GBP1 Missense_Mutation p.Q387R 0.25 tolerated(0.7) probably_damaging(0.993) TCGA-CK-5916-01 1 898541 898541 C T KLHL17 Silent p.R365R 0.35 TCGA-CK-5916-01 1 89875975 89875975 C T GBP1P1 RNA 0.30 TCGA-CK-5916-01 1 91843623 91843623 G T HFM1 Silent p.R452R 0.30 TCGA-CK-5916-01 1 92633516 92633516 C T KIAA1107 Silent p.L35L 0.27 TCGA-CK-5916-01 1 92979148 92979148 A - EVI5 3'UTR 0.24 TCGA-CK-5916-01 1 93312813 93312813 A G FAM69A Missense_Mutation p.I134T 0.15 tolerated(0.62) benign(0.001) TCGA-CK-5916-01 1 93730217 93730217 T - CCDC18 Intron 0.28 TCGA-CK-5916-01 1 94012505 94012505 C A FNBP1L Missense_Mutation p.L461I 0.31 deleterious(0) probably_damaging(0.984) TCGA-CK-5916-01 1 94016757 94016757 A T FNBP1L Intron 0.22 TCGA-CK-5916-01 1 94466599 94466599 G T ABCA4 Missense_Mutation p.S2115R 0.29 deleterious(0.02) possibly_damaging(0.495) TCGA-CK-5916-01 1 94639400 94639400 A - ARHGAP29 3'UTR 0.25 TCGA-CK-5916-01 1 981877 981877 C - AGRN Frame_Shift_Del p.L1006Wfs*34 0.24 TCGA-CK-5916-01 20 10030786 10030789 TTAT - ANKEF1 Frame_Shift_Del p.Y524Tfs*5 0.31 TCGA-CK-5916-01 20 12989846 12989846 C T SPTLC3 5'UTR 0.39 TCGA-CK-5916-01 20 13894523 13894523 C T SEL1L2 Missense_Mutation p.A152T 0.32 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 20 15967382 15967382 T A MACROD2 Missense_Mutation p.N332K 0.18 deleterious_low_confidence(0.02) benign(0.156) TCGA-CK-5916-01 20 17930995 17930995 A C SNX5 Missense_Mutation p.Y219D 0.32 deleterious(0) possibly_damaging(0.762) TCGA-CK-5916-01 20 20350751 20350751 C - INSM1 3'UTR 0.28 TCGA-CK-5916-01 20 23028959 23028959 C T THBD Missense_Mutation p.A395T 0.28 tolerated(0.15) benign(0.255) TCGA-CK-5916-01 20 23334756 23334756 C A NXT1 Silent p.T26T 0.32 TCGA-CK-5916-01 20 23472484 23472484 C T CST8 Silent p.S60S 0.38 TCGA-CK-5916-01 20 23473635 23473635 C T CST8 Missense_Mutation p.A91V 0.32 deleterious(0.04) possibly_damaging(0.575) TCGA-CK-5916-01 20 23729754 23729754 C - CST1 Frame_Shift_Del p.V81* 0.28 TCGA-CK-5916-01 20 23807309 23807309 A G CST2 5'UTR 0.33 TCGA-CK-5916-01 20 25388360 25388360 G T GINS1 5'Flank 0.31 TCGA-CK-5916-01 20 25456771 25456771 C A NINL Missense_Mutation p.E1052D 0.36 deleterious(0.02) benign(0.307) TCGA-CK-5916-01 20 2597927 2597928 - C TMC2 Frame_Shift_Ins p.P719Tfs*4 0.35 TCGA-CK-5916-01 20 29964991 29964991 G - DEFB118 3'Flank 0.22 TCGA-CK-5916-01 20 30582962 30582962 G A XKR7 Missense_Mutation p.A226T 0.32 deleterious(0.03) probably_damaging(1) TCGA-CK-5916-01 20 30671796 30671796 C - HCK Frame_Shift_Del p.R213Efs*77 0.23 TCGA-CK-5916-01 20 31238628 31238628 G A C20orf203 RNA 0.23 TCGA-CK-5916-01 20 3127408 3127408 C T FASTKD5 3'UTR 0.23 TCGA-CK-5916-01 20 3145186 3145186 C T LZTS3 Missense_Mutation p.A646T 0.28 tolerated(0.66) benign(0.004) TCGA-CK-5916-01 20 3146310 3146310 G T LZTS3 Missense_Mutation p.Q386K 0.25 deleterious(0) probably_damaging(0.966) TCGA-CK-5916-01 20 31609099 31609099 C T BPIFB2 Missense_Mutation p.R403C 0.40 tolerated(0.06) possibly_damaging(0.809) TCGA-CK-5916-01 20 31647273 31647273 G C BPIFB3 Missense_Mutation p.G124A 0.33 tolerated(1) probably_damaging(0.921) TCGA-CK-5916-01 20 32378813 32378813 C T ZNF341 Silent p.C678C 0.35 TCGA-CK-5916-01 20 33433115 33433115 G A GGT7 3'UTR 0.24 TCGA-CK-5916-01 20 33448063 33448063 T C GGT7 Missense_Mutation p.Y246C 0.22 deleterious(0) probably_damaging(0.933) TCGA-CK-5916-01 20 35128951 35128951 C T DLGAP4 Missense_Mutation p.R814W 0.28 deleterious(0) benign(0.092) TCGA-CK-5916-01 20 37524329 37524329 A G PPP1R16B Missense_Mutation p.N148S 0.19 tolerated(0.4) benign(0.259) TCGA-CK-5916-01 20 40041998 40041998 G A CHD6 Missense_Mutation p.A2366V 0.17 deleterious(0) benign(0.26) TCGA-CK-5916-01 20 40112027 40112027 G A CHD6 Missense_Mutation p.A797V 0.33 deleterious(0.01) possibly_damaging(0.746) TCGA-CK-5916-01 20 40713420 40713420 C A PTPRT Silent p.T1346T 0.24 TCGA-CK-5916-01 20 42143728 42143728 C T L3MBTL1 Silent p.C172C 0.35 TCGA-CK-5916-01 20 43384595 43384595 G A RIMS4 3'UTR 0.40 TCGA-CK-5916-01 20 44589143 44589143 G A ZNF335 Missense_Mutation p.R602C 0.29 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 20 44590754 44590754 T C ZNF335 Missense_Mutation p.Y534C 0.29 deleterious(0.01) probably_damaging(1) TCGA-CK-5916-01 20 44841694 44841694 G A CDH22 Silent p.G324G 0.25 TCGA-CK-5916-01 20 4680404 4680404 G A PRNP Missense_Mutation p.V180I 0.25 tolerated(0.06) possibly_damaging(0.657) TCGA-CK-5916-01 20 4706307 4706307 C T PRND 3'UTR 0.22 TCGA-CK-5916-01 20 47269182 47269182 C A PREX1 Missense_Mutation p.E803D 0.29 tolerated(0.07) benign(0.044) TCGA-CK-5916-01 20 48744614 48744614 G A TMEM189-UBE2V1 Missense_Mutation p.R197C 0.36 tolerated_low_confidence(0.07) benign(0.029) TCGA-CK-5916-01 20 53267155 53267155 A T DOK5 3'UTR 0.33 TCGA-CK-5916-01 20 55206291 55206291 C A TFAP2C Missense_Mutation p.P27T 0.21 deleterious(0.01) benign(0.154) TCGA-CK-5916-01 20 61467616 61467616 G C COL9A3 Silent p.G493G 0.29 TCGA-CK-5916-01 20 61538649 61538649 G A DIDO1 Silent p.P408P 0.27 TCGA-CK-5916-01 20 61542907 61542907 T C DIDO1 Missense_Mutation p.S20G 0.33 probably_damaging(0.993) TCGA-CK-5916-01 20 61957025 61957025 C - COL20A1 Frame_Shift_Del p.G1120Afs*17 0.26 TCGA-CK-5916-01 20 61981684 61981684 C T CHRNA4 Missense_Mutation p.R360Q 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CK-5916-01 20 61981951 61981951 C T CHRNA4 Missense_Mutation p.C271Y 0.30 deleterious(0) probably_damaging(0.973) TCGA-CK-5916-01 20 62045445 62045445 C T KCNQ2 Missense_Mutation p.V543M 0.35 deleterious(0.02) probably_damaging(0.939) TCGA-CK-5916-01 20 62124548 62124548 G - EEF1A2 Frame_Shift_Del p.T239Rfs*40 0.37 TCGA-CK-5916-01 20 62331870 62331870 G A ARFRP1 Silent p.R177R 0.29 TCGA-CK-5916-01 20 62407196 62407196 G T ZBTB46 Missense_Mutation p.L353I 0.26 deleterious(0.05) benign(0.445) TCGA-CK-5916-01 20 62577831 62577831 C T UCKL1 Silent p.T93T 0.31 TCGA-CK-5916-01 20 656114 656114 G A SCRT2 Silent p.N44N 0.16 TCGA-CK-5916-01 21 11021110 11021110 C T BAGE2 Intron 0.05 TCGA-CK-5916-01 21 22696786 22696786 T C NCAM2 Missense_Mutation p.S235P 0.37 deleterious(0.01) possibly_damaging(0.497) TCGA-CK-5916-01 21 27938629 27938629 C T CYYR1 Silent p.T44T 0.28 TCGA-CK-5916-01 21 28216573 28216573 G A ADAMTS1 Missense_Mutation p.P234L 0.26 tolerated(0.23) benign(0.036) TCGA-CK-5916-01 21 32526728 32526728 G A TIAM1 Missense_Mutation p.A1003V 0.27 tolerated(0.07) benign(0.025) TCGA-CK-5916-01 21 34115331 34115331 C T PAXBP1 Intron 0.33 TCGA-CK-5916-01 21 34725190 34725190 G T IFNAR1 Missense_Mutation p.A424S 0.25 tolerated(0.25) benign(0.049) TCGA-CK-5916-01 21 35260550 35260550 C T ITSN1 Silent p.V1704V 0.32 TCGA-CK-5916-01 21 35473623 35473623 T - SLC5A3 3'UTR 0.22 TCGA-CK-5916-01 21 35477166 35477166 A - SLC5A3 3'UTR 0.60 TCGA-CK-5916-01 21 35497778 35497778 C T MRPS6 Silent p.G61G 0.35 TCGA-CK-5916-01 21 38997356 38997356 T C KCNJ6 3'UTR 0.35 TCGA-CK-5916-01 21 40610449 40610449 T C BRWD1 Silent p.E844E 0.32 TCGA-CK-5916-01 21 41505807 41505807 T C DSCAM Missense_Mutation p.Q1179R 0.31 tolerated(0.43) benign(0.333) TCGA-CK-5916-01 21 43161859 43161859 G A RIPK4 Silent p.N498N 0.30 TCGA-CK-5916-01 21 43411860 43411860 C T ZBTB21 Missense_Mutation p.R782H 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 21 43412484 43412484 G T ZBTB21 Missense_Mutation p.P574H 0.32 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 21 45656840 45656840 G - ICOSLG Frame_Shift_Del p.Q106Rfs*11 0.34 TCGA-CK-5916-01 21 45746686 45746686 G A PFKL Missense_Mutation p.V762M 0.37 tolerated(0.05) probably_damaging(0.923) TCGA-CK-5916-01 21 45789051 45789051 C A TRPM2 Intron 0.37 TCGA-CK-5916-01 21 46685325 46685325 T C POFUT2 3'UTR 0.15 TCGA-CK-5916-01 21 47409043 47409043 G A COL6A1 Missense_Mutation p.G284R 0.38 deleterious(0) unknown(0) TCGA-CK-5916-01 21 47412086 47412086 G A COL6A1 Silent p.P397P 0.36 TCGA-CK-5916-01 21 47552118 47552118 G A COL6A2 Silent p.A904A 0.41 TCGA-CK-5916-01 21 47845754 47845754 C T PCNT Nonsense_Mutation p.Q2397* 0.30 TCGA-CK-5916-01 21 9907301 9907301 G A TEKT4P2 RNA 0.20 TCGA-CK-5916-01 22 16287628 16287628 G A POTEH Silent p.H86H 0.21 TCGA-CK-5916-01 22 16449091 16449091 T G OR11H1 Missense_Mutation p.K238N 0.31 deleterious(0.03) benign(0.288) TCGA-CK-5916-01 22 17528283 17528283 C T CECR7 RNA 0.30 TCGA-CK-5916-01 22 19511117 19511117 C T CLDN5 3'UTR 0.50 TCGA-CK-5916-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.24 TCGA-CK-5916-01 22 21068920 21068920 G A PI4KA Nonsense_Mutation p.Q1796* 0.31 TCGA-CK-5916-01 22 21133875 21133875 A G SERPIND1 Missense_Mutation p.Y92C 0.31 tolerated(0.15) probably_damaging(0.999) TCGA-CK-5916-01 22 21327579 21327579 C T AIFM3 Intron 0.28 TCGA-CK-5916-01 22 21349262 21349262 G A LZTR1 Missense_Mutation p.R630Q 0.38 deleterious(0) probably_damaging(0.995) TCGA-CK-5916-01 22 23637228 23637228 G A BCR Silent p.L966L 0.26 TCGA-CK-5916-01 22 23657883 23657883 G A BCR 3'UTR 0.36 TCGA-CK-5916-01 22 24447361 24447361 G A CABIN1 Missense_Mutation p.R244Q 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-CK-5916-01 22 24567808 24567808 C T CABIN1 Missense_Mutation p.A1962V 0.30 tolerated_low_confidence(0.3) benign(0.003) TCGA-CK-5916-01 22 24621319 24621319 C T GGT5 Missense_Mutation p.R467H 0.35 deleterious(0) probably_damaging(0.982) TCGA-CK-5916-01 22 24829321 24829321 C T ADORA2A 5'UTR 0.22 TCGA-CK-5916-01 22 25024342 25024342 G T GGT1 Missense_Mutation p.R517I 0.40 tolerated(0.12) possibly_damaging(0.56) TCGA-CK-5916-01 22 26165135 26165135 G A MYO18B Missense_Mutation p.A418T 0.33 tolerated_low_confidence(0.05) benign(0.406) TCGA-CK-5916-01 22 26829563 26829563 C - ASPHD2 5'UTR 0.49 TCGA-CK-5916-01 22 28381249 28381249 G A TTC28 Silent p.L1935L 0.25 TCGA-CK-5916-01 22 30766573 30766573 G A CCDC157 Missense_Mutation p.V227I 0.52 tolerated(0.2) benign(0.011) TCGA-CK-5916-01 22 30821897 30821897 G T MTFP1 Missense_Mutation p.E10D 0.71 deleterious(0.03) benign(0.03) TCGA-CK-5916-01 22 31500398 31500398 G A SMTN Silent p.S923S 0.26 TCGA-CK-5916-01 22 31838013 31838013 C T EIF4ENIF1 Silent p.S766S 0.65 TCGA-CK-5916-01 22 32241130 32241130 C T DEPDC5 Silent p.D967D 0.14 TCGA-CK-5916-01 22 36922148 36922148 G A EIF3D Silent p.P7P 0.61 TCGA-CK-5916-01 22 37196923 37196923 G A PVALB 3'UTR 0.67 TCGA-CK-5916-01 22 38612001 38612001 C T MAFF 3'UTR 0.28 TCGA-CK-5916-01 22 38823135 38823135 G A KCNJ4 Missense_Mutation p.R335C 0.33 tolerated(0.07) possibly_damaging(0.838) TCGA-CK-5916-01 22 39887063 39887063 C - MGAT3 3'UTR 0.50 TCGA-CK-5916-01 22 40662665 40662665 C T TNRC6B Nonsense_Mutation p.R811* 0.60 TCGA-CK-5916-01 22 41569726 41569726 A G EP300 Missense_Mutation p.M1573V 0.29 benign(0.127) TCGA-CK-5916-01 22 41652736 41652736 G A RANGAP1 Silent p.R289R 0.33 TCGA-CK-5916-01 22 42229248 42229248 G - SREBF2 5'UTR 0.60 TCGA-CK-5916-01 22 42609605 42609605 G - TCF20 Frame_Shift_Del p.R570Dfs*37 0.43 TCGA-CK-5916-01 22 46654676 46654676 G A PKDREJ Missense_Mutation p.A1515V 0.32 tolerated(0.32) benign(0.004) TCGA-CK-5916-01 22 50899098 50899098 G A SBF1 Missense_Mutation p.A1004V 0.68 tolerated(0.89) benign(0.046) TCGA-CK-5916-01 2 100209981 100209981 G A AFF3 Silent p.N739N 0.39 TCGA-CK-5916-01 2 109399283 109399284 - T RANBP2 Frame_Shift_Ins p.H3114Sfs*18 0.25 TCGA-CK-5916-01 2 113590331 113590331 G A IL1B Missense_Mutation p.T125M 0.32 tolerated(0.06) probably_damaging(0.988) TCGA-CK-5916-01 2 114709120 114709120 C A ACTR3 Missense_Mutation p.P308H 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 2 120125862 120125862 T C DBI Silent p.T97T 0.28 TCGA-CK-5916-01 2 120194728 120194728 C T TMEM37 Silent p.G95G 0.17 TCGA-CK-5916-01 2 121742182 121742182 A G GLI2 Missense_Mutation p.T607A 0.10 tolerated(0.29) benign(0.001) TCGA-CK-5916-01 2 121744156 121744156 G A GLI2 Silent p.T753T 0.38 TCGA-CK-5916-01 2 121989464 121989464 G - TFCP2L1 Frame_Shift_Del p.Q427Sfs*18 0.33 TCGA-CK-5916-01 2 128321773 128321773 G A MYO7B Missense_Mutation p.V22M 0.31 deleterious(0) possibly_damaging(0.614) TCGA-CK-5916-01 2 128395021 128395021 G A MYO7B 3'UTR 0.35 TCGA-CK-5916-01 2 128526575 128526575 T C WDR33 Missense_Mutation p.N69D 0.38 deleterious(0.04) unknown(0) TCGA-CK-5916-01 2 128747330 128747330 G A SAP130 Nonsense_Mutation p.R556* 0.31 TCGA-CK-5916-01 2 130739972 130739972 A G RAB6C 3'UTR 0.29 TCGA-CK-5916-01 2 130897121 130897121 G T CCDC74B 3'UTR 0.26 TCGA-CK-5916-01 2 141250194 141250194 A G LRP1B Missense_Mutation p.Y3035H 0.33 benign(0.403) TCGA-CK-5916-01 2 141812783 141812783 C - LRP1B Frame_Shift_Del p.G485Afs*56 0.24 TCGA-CK-5916-01 2 1426892 1426892 C T TPO Missense_Mutation p.T57M 0.28 deleterious(0) possibly_damaging(0.886) TCGA-CK-5916-01 2 143718297 143718297 G A KYNU Silent p.Q229Q 0.29 TCGA-CK-5916-01 2 149226302 149226302 A C MBD5 Missense_Mutation p.S264R 0.27 deleterious(0.01) possibly_damaging(0.504) TCGA-CK-5916-01 2 149542465 149542465 G A EPC2 Missense_Mutation p.R749Q 0.30 tolerated(0.24) possibly_damaging(0.464) TCGA-CK-5916-01 2 153504367 153504367 G A FMNL2 Missense_Mutation p.R1076H 0.28 unknown(0) TCGA-CK-5916-01 2 163044689 163044689 T C FAP Missense_Mutation p.T602A 0.16 tolerated(0.61) benign(0.074) TCGA-CK-5916-01 2 163208918 163208918 G A GCA Splice_Site p.X88_splice 0.28 TCGA-CK-5916-01 2 163241441 163241441 T C KCNH7 Missense_Mutation p.T907A 0.30 tolerated(0.76) benign(0.001) TCGA-CK-5916-01 2 166605315 166605315 T - GALNT3 Frame_Shift_Del p.K626Nfs*16 0.28 TCGA-CK-5916-01 2 170032999 170032999 C T LRP2 Missense_Mutation p.R3498H 0.22 benign(0.002) TCGA-CK-5916-01 2 170799113 170799113 T C UBR3 Missense_Mutation p.L925S 0.30 deleterious(0) probably_damaging(0.994) TCGA-CK-5916-01 2 177016479 177016479 G A HOXD4 Missense_Mutation p.G40S 0.34 tolerated(0.55) benign(0) TCGA-CK-5916-01 2 179413899 179413899 G T TTN Silent p.P30818P 0.27 TCGA-CK-5916-01 2 179430943 179430944 - T TTN Frame_Shift_Ins p.I26639Nfs*2 0.27 TCGA-CK-5916-01 2 179442454 179442454 G A TTN Missense_Mutation p.A22900V 0.32 TCGA-CK-5916-01 2 179499204 179499204 C T TTN Missense_Mutation p.A14102T 0.30 TCGA-CK-5916-01 2 179591919 179591919 T C TTN Missense_Mutation p.I6725V 0.25 TCGA-CK-5916-01 2 179605839 179605839 T C TTN Missense_Mutation p.K4041E 0.24 TCGA-CK-5916-01 2 179640610 179640610 G A TTN Missense_Mutation p.S1994L 0.31 TCGA-CK-5916-01 2 179659943 179659943 G - TTN Frame_Shift_Del p.I318Sfs*42 0.30 TCGA-CK-5916-01 2 182396402 182396402 C T ITGA4 Missense_Mutation p.P895S 0.25 tolerated(0.87) benign(0.011) TCGA-CK-5916-01 2 183621191 183621191 G A DNAJC10 Missense_Mutation p.A602T 0.28 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 2 184025935 184025936 - ACTGTTCC NUP35 3'UTR 0.09 TCGA-CK-5916-01 2 187626933 187626933 C T FAM171B Nonsense_Mutation p.R622* 0.36 TCGA-CK-5916-01 2 191797646 191797646 T - GLS Intron 0.20 TCGA-CK-5916-01 2 191897806 191897806 A C STAT4 Missense_Mutation p.I641S 0.15 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 2 196599731 196599731 A G SLC39A10 Missense_Mutation p.Y821C 0.30 deleterious(0) possibly_damaging(0.855) TCGA-CK-5916-01 2 196756390 196756390 C T DNAH7 Missense_Mutation p.A1679T 0.27 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 2 197143338 197143338 G - HECW2 Frame_Shift_Del p.R1017Gfs*19 0.32 TCGA-CK-5916-01 2 197590778 197590778 C T CCDC150 Silent p.T837T 0.26 TCGA-CK-5916-01 2 198388364 198388364 C A HSPE1-MOB4 Missense_Mutation p.P62H 0.37 deleterious(0) probably_damaging(0.94) TCGA-CK-5916-01 2 201436036 201436036 C T SGOL2 Nonsense_Mutation p.Q323* 0.26 TCGA-CK-5916-01 2 203848249 203848249 A G CARF Missense_Mutation p.T694A 0.19 tolerated_low_confidence(0.27) benign(0.026) TCGA-CK-5916-01 2 20402198 20402198 G A SDC1 3'UTR 0.71 TCGA-CK-5916-01 2 204305329 204305329 C T RAPH1 Missense_Mutation p.V862M 0.32 possibly_damaging(0.868) TCGA-CK-5916-01 2 205990409 205990409 C G PARD3B Missense_Mutation p.T461R 0.34 deleterious(0) probably_damaging(0.917) TCGA-CK-5916-01 2 20870225 20870225 C T GDF7 Silent p.D131D 0.33 TCGA-CK-5916-01 2 209345820 209345820 C T PTH2R Missense_Mutation p.T336M 0.34 deleterious(0) probably_damaging(0.995) TCGA-CK-5916-01 2 210698806 210698806 C T UNC80 Silent p.S952S 0.27 TCGA-CK-5916-01 2 210769533 210769533 C T UNC80 Silent p.H1476H 0.29 TCGA-CK-5916-01 2 215845318 215845318 C T ABCA12 Silent p.L1543L 0.23 TCGA-CK-5916-01 2 216191614 216191614 G A ATIC Missense_Mutation p.V201I 0.29 tolerated(0.34) benign(0.001) TCGA-CK-5916-01 2 216964943 216964943 T C TMEM169 Missense_Mutation p.F191S 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 2 218713456 218713456 C - TNS1 Frame_Shift_Del p.G470Afs*23 0.40 TCGA-CK-5916-01 2 219001750 219001750 A G CXCR2 3'UTR 0.26 TCGA-CK-5916-01 2 219528960 219528960 C T RNF25 Missense_Mutation p.R367H 0.30 tolerated(0.11) benign(0.086) TCGA-CK-5916-01 2 219736393 219736393 G A WNT6 Missense_Mutation p.G163D 0.21 tolerated(0.36) benign(0.004) TCGA-CK-5916-01 2 219885941 219885941 C T CCDC108 Silent p.L1064L 0.24 TCGA-CK-5916-01 2 220101631 220101631 G A GLB1L 3'UTR 0.54 TCGA-CK-5916-01 2 220115792 220115792 T C TUBA4A Missense_Mutation p.Y210C 0.12 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-CK-5916-01 2 220379613 220379613 G A ASIC4 Missense_Mutation p.R183Q 0.25 tolerated(0.07) possibly_damaging(0.771) TCGA-CK-5916-01 2 220431650 220431650 T C OBSL1 Missense_Mutation p.H679R 0.31 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 2 223919558 223919558 A T KCNE4 3'UTR 0.27 TCGA-CK-5916-01 2 224463040 224463040 C T SCG2 Missense_Mutation p.A321T 0.33 tolerated(0.28) benign(0.328) TCGA-CK-5916-01 2 230341870 230341870 C T DNER Missense_Mutation p.C416Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 2 231934871 231934871 A G PSMD1 Missense_Mutation p.N215D 0.25 tolerated(0.07) benign(0.392) TCGA-CK-5916-01 2 233735114 233735114 G A C2orf82 Silent p.A21A 0.25 TCGA-CK-5916-01 2 234104121 234104121 G A INPP5D Silent p.K879K 0.31 TCGA-CK-5916-01 2 234774709 234774709 T C MSL3P1 RNA 0.17 TCGA-CK-5916-01 2 234851333 234851333 A G TRPM8 Missense_Mutation p.I214V 0.34 tolerated(0.73) benign(0.083) TCGA-CK-5916-01 2 234904986 234904986 G A TRPM8 Missense_Mutation p.V986I 0.08 tolerated(0.07) benign(0.048) TCGA-CK-5916-01 2 238990797 238990797 C T SCLY Missense_Mutation p.R250C 0.29 deleterious(0.01) possibly_damaging(0.605) TCGA-CK-5916-01 2 239038803 239038803 C A ESPNL Missense_Mutation p.A483E 0.38 tolerated(0.33) benign(0.019) TCGA-CK-5916-01 2 239059686 239059686 G A KLHL30 Missense_Mutation p.G573S 0.20 tolerated_low_confidence(0.51) benign(0.001) TCGA-CK-5916-01 2 23918522 23918522 C T KLHL29 Silent p.R524R 0.40 TCGA-CK-5916-01 2 23974901 23974901 C A ATAD2B 3'UTR 0.17 TCGA-CK-5916-01 2 23974902 23974902 T G ATAD2B 3'UTR 0.17 TCGA-CK-5916-01 2 240002823 240002823 G - HDAC4 Frame_Shift_Del p.M902Wfs*55 0.23 TCGA-CK-5916-01 2 24046384 24046384 C T ATAD2B Silent p.L625L 0.32 TCGA-CK-5916-01 2 242438710 242438710 C T STK25 Missense_Mutation p.A183T 0.29 deleterious(0) probably_damaging(0.966) TCGA-CK-5916-01 2 242611693 242611693 G - ATG4B 3'UTR 0.22 TCGA-CK-5916-01 2 242794773 242794773 C A PDCD1 Nonsense_Mutation p.E146* 0.31 TCGA-CK-5916-01 2 24930635 24930635 C A NCOA1 Missense_Mutation p.L766M 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-CK-5916-01 2 25141726 25141726 C T ADCY3 Missense_Mutation p.G44D 0.27 deleterious(0) possibly_damaging(0.83) TCGA-CK-5916-01 2 25551563 25551563 C T DNMT3A Intron 0.30 TCGA-CK-5916-01 2 26539907 26539907 G A GPR113 Silent p.S125S 0.27 TCGA-CK-5916-01 2 26687831 26687831 G A OTOF Silent p.D1622D 0.33 TCGA-CK-5916-01 2 27247070 27247070 A G MAPRE3 Missense_Mutation p.N125S 0.25 deleterious(0) benign(0.022) TCGA-CK-5916-01 2 27465543 27465543 T C CAD Missense_Mutation p.L2093P 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 2 27480844 27480844 C T SLC30A3 Silent p.L169L 0.34 TCGA-CK-5916-01 2 27667085 27667085 T - KRTCAP3 Intron 0.30 TCGA-CK-5916-01 2 27681689 27681689 A G IFT172 Missense_Mutation p.I945T 0.30 deleterious(0) possibly_damaging(0.571) TCGA-CK-5916-01 2 27887996 27887996 C T SLC4A1AP Silent p.S285S 0.29 TCGA-CK-5916-01 2 29268271 29268271 T C FAM179A Missense_Mutation p.L906P 0.26 deleterious(0) probably_damaging(0.95) TCGA-CK-5916-01 2 32449824 32449824 A - NLRC4 Frame_Shift_Del p.F931Lfs*6 0.30 TCGA-CK-5916-01 2 32707542 32707542 A T BIRC6 Missense_Mutation p.T2530S 0.28 benign(0.007) TCGA-CK-5916-01 2 33810013 33810013 C T FAM98A Missense_Mutation p.G463R 0.38 tolerated_low_confidence(0.4) unknown(0) TCGA-CK-5916-01 2 37152248 37152248 C A STRN Missense_Mutation p.R113I 0.24 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 2 42990821 42990821 C A OXER1 Missense_Mutation p.V167F 0.36 tolerated(0.07) possibly_damaging(0.559) TCGA-CK-5916-01 2 44021481 44021481 T - DYNC2LI1 Intron 0.42 TCGA-CK-5916-01 2 44999192 44999192 G A CAMKMT Silent p.P304P 0.35 TCGA-CK-5916-01 2 46608858 46608858 C T EPAS1 Silent p.S723S 0.29 TCGA-CK-5916-01 2 50280536 50280536 A G NRXN1 Missense_Mutation p.M1374T 0.34 tolerated(0.38) benign(0.089) TCGA-CK-5916-01 2 54586205 54586205 G T C2orf73 Missense_Mutation p.Q166H 0.28 deleterious(0.02) benign(0.296) TCGA-CK-5916-01 2 56108765 56108765 G A EFEMP1 Nonsense_Mutation p.R208* 0.24 TCGA-CK-5916-01 2 60688969 60688969 G - BCL11A Frame_Shift_Del p.L360Sfs*61 0.36 TCGA-CK-5916-01 2 63221066 63221066 C T EHBP1 Missense_Mutation p.A1049V 0.24 tolerated(0.13) benign(0.012) TCGA-CK-5916-01 2 65245252 65245252 G A SLC1A4 Missense_Mutation p.G361D 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5916-01 2 65315714 65315714 A G RAB1A Silent p.G177G 0.31 TCGA-CK-5916-01 2 68358241 68358241 G - WDR92 3'UTR 0.36 TCGA-CK-5916-01 2 69759237 69759237 C T AAK1 Missense_Mutation p.A198T 0.29 deleterious(0) unknown(0) TCGA-CK-5916-01 2 71191573 71191573 C - ATP6V1B1 Frame_Shift_Del p.I386Sfs*10 0.30 TCGA-CK-5916-01 2 71417008 71417008 T C PAIP2B Silent p.S94S 0.25 TCGA-CK-5916-01 2 74601598 74601598 G A DCTN1 Intron 0.42 TCGA-CK-5916-01 2 74607156 74607156 C A DCTN1 Missense_Mutation p.Q3H 0.32 tolerated_low_confidence(0.07) benign(0.001) TCGA-CK-5916-01 2 74643322 74643322 G A C2orf81 Missense_Mutation p.A25V 0.13 tolerated(0.12) benign(0.266) TCGA-CK-5916-01 2 79349974 79349974 G A REG1A Missense_Mutation p.R110H 0.25 tolerated(0.17) benign(0.038) TCGA-CK-5916-01 2 80530254 80530254 G A LRRTM1 Missense_Mutation p.R231C 0.30 deleterious(0) probably_damaging(0.993) TCGA-CK-5916-01 2 80846348 80846348 T C CTNNA2 Intron 0.27 TCGA-CK-5916-01 2 85824623 85824623 C T RNF181 Missense_Mutation p.T153M 0.21 deleterious(0) possibly_damaging(0.832) TCGA-CK-5916-01 2 86281317 86281317 C A POLR1A Missense_Mutation p.K718N 0.29 tolerated(0.25) possibly_damaging(0.697) TCGA-CK-5916-01 2 96072822 96072822 C T FAHD2A Missense_Mutation p.P127S 0.30 deleterious(0) probably_damaging(0.986) TCGA-CK-5916-01 2 96078466 96078466 C - FAHD2A Frame_Shift_Del p.P281Qfs*26 0.25 TCGA-CK-5916-01 2 96459538 96459539 - CC AC008268.2 RNA 0.25 TCGA-CK-5916-01 2 96557477 96557477 A G ANKRD36C Silent p.S352S 0.20 TCGA-CK-5916-01 2 96852492 96852492 G A STARD7 Silent p.G363G 0.38 TCGA-CK-5916-01 2 97356310 97356310 C T FER1L5 RNA 0.36 TCGA-CK-5916-01 2 97364836 97364836 A G FER1L5 RNA 0.31 TCGA-CK-5916-01 2 97595044 97595044 G A FAM178B Silent p.H364H 0.37 TCGA-CK-5916-01 2 99725866 99725866 A G TSGA10 Missense_Mutation p.S13P 0.26 deleterious(0) benign(0.192) TCGA-CK-5916-01 2 99767194 99767194 C G C2ORF15 Missense_Mutation p.T92R 0.31 deleterious_low_confidence(0.01) benign(0.112) TCGA-CK-5916-01 3 100029267 100029267 A G TBC1D23 Silent p.S478S 0.19 TCGA-CK-5916-01 3 101390570 101390570 T A ZBTB11 Intron 0.44 TCGA-CK-5916-01 3 101481366 101481366 T A CEP97 Missense_Mutation p.F619I 0.27 tolerated(0.09) benign(0.002) TCGA-CK-5916-01 3 107097038 107097038 C A CCDC54 Missense_Mutation p.P202T 0.29 tolerated(0.15) benign(0.027) TCGA-CK-5916-01 3 109023515 109023515 C T DPPA2 Missense_Mutation p.V221I 0.28 tolerated(0.28) benign(0.013) TCGA-CK-5916-01 3 111996686 111996686 C T SLC9C1 Missense_Mutation p.G114S 0.31 tolerated(0.12) probably_damaging(0.998) TCGA-CK-5916-01 3 112348976 112348976 G A CCDC80 Silent p.I673I 0.32 TCGA-CK-5916-01 3 112564696 112564696 G A CD200R1L 5'UTR 0.31 TCGA-CK-5916-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.36 TCGA-CK-5916-01 3 118624443 118624443 G T IGSF11 Missense_Mutation p.P235T 0.11 deleterious(0) possibly_damaging(0.587) TCGA-CK-5916-01 3 119133703 119133703 C T ARHGAP31 Missense_Mutation p.A976V 0.30 tolerated(0.14) possibly_damaging(0.878) TCGA-CK-5916-01 3 120053824 120053824 T C LRRC58 Silent p.E264E 0.18 TCGA-CK-5916-01 3 122060381 122060381 C T CSTA Silent p.D88D 0.24 TCGA-CK-5916-01 3 122437718 122437718 C T PARP14 Missense_Mutation p.R1574W 0.32 deleterious(0.02) benign(0.008) TCGA-CK-5916-01 3 12421423 12421423 G A PPARG Silent p.E101E 0.28 TCGA-CK-5916-01 3 124646629 124646629 G - MUC13 Frame_Shift_Del p.I88* 0.22 TCGA-CK-5916-01 3 125826060 125826060 C A ALDH1L1 Missense_Mutation p.D803Y 0.22 deleterious(0) possibly_damaging(0.621) TCGA-CK-5916-01 3 126752807 126752807 C T PLXNA1 Missense_Mutation p.R1880W 0.32 deleterious(0) probably_damaging(0.924) TCGA-CK-5916-01 3 127395423 127395423 A G ABTB1 Silent p.T175T 0.26 TCGA-CK-5916-01 3 12857988 12857988 G A CAND2 Silent p.L519L 0.36 TCGA-CK-5916-01 3 129268074 129268074 G A H1FOO Silent p.A203A 0.30 TCGA-CK-5916-01 3 129275265 129275265 C T PLXND1 Missense_Mutation p.A1890T 0.36 tolerated(1) benign(0.002) TCGA-CK-5916-01 3 129288750 129288751 - C PLXND1 Frame_Shift_Ins p.S1268Qfs*34 0.26 TCGA-CK-5916-01 3 130650984 130650984 T C ATP2C1 Splice_Site p.X112_splice 0.30 TCGA-CK-5916-01 3 130743670 130743670 T C ASTE1 Missense_Mutation p.S161G 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 3 131268791 131268791 C T CPNE4 Silent p.S434S 0.31 TCGA-CK-5916-01 3 137942492 137942492 G T ARMC8 Missense_Mutation p.D104Y 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-CK-5916-01 3 141164534 141164534 A C ZBTB38 Silent p.R1102R 0.26 TCGA-CK-5916-01 3 14559382 14559382 G T GRIP2 RNA 0.37 TCGA-CK-5916-01 3 145917706 145917706 G A PLSCR4 Missense_Mutation p.P173L 0.28 deleterious(0.02) possibly_damaging(0.862) TCGA-CK-5916-01 3 147108745 147108745 G A ZIC4 Missense_Mutation p.A376V 0.42 tolerated_low_confidence(0.39) benign(0.001) TCGA-CK-5916-01 3 147130418 147130418 A G ZIC1 Missense_Mutation p.M366V 0.27 tolerated(1) benign(0.006) TCGA-CK-5916-01 3 14860586 14860586 G C FGD5 Missense_Mutation p.R3T 0.19 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CK-5916-01 3 14860592 14860592 C T FGD5 Missense_Mutation p.P5L 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-5916-01 3 152886003 152886003 G C RAP2B 3'UTR 0.33 TCGA-CK-5916-01 3 153905511 153905511 A C ARHGEF26 Missense_Mutation p.I509L 0.32 tolerated(0.13) benign(0.224) TCGA-CK-5916-01 3 15507877 15507877 C T COLQ Missense_Mutation p.R262H 0.34 tolerated(0.58) unknown(0) TCGA-CK-5916-01 3 155232562 155232562 G A PLCH1 Missense_Mutation p.R516W 0.24 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 3 159583964 159583967 GAGA - IQCJ-SCHIP1 Frame_Shift_Del p.R335Sfs*39 0.30 TCGA-CK-5916-01 3 160474379 160474379 G A PPM1L Missense_Mutation p.V95M 0.37 deleterious(0.01) probably_damaging(0.969) TCGA-CK-5916-01 3 16419389 16419389 G A RFTN1 Missense_Mutation p.P221L 0.28 tolerated(0.32) benign(0.014) TCGA-CK-5916-01 3 169801859 169801859 T C GPR160 Silent p.L33L 0.30 TCGA-CK-5916-01 3 170928935 170928936 - T TNIK Frame_Shift_Ins p.N93Efs*7 0.23 TCGA-CK-5916-01 3 172351453 172351453 G A NCEH1 Missense_Mutation p.H387Y 0.30 tolerated(0.52) benign(0.006) TCGA-CK-5916-01 3 179085271 179085271 G T MFN1 Missense_Mutation p.E266D 0.32 tolerated(1) benign(0.006) TCGA-CK-5916-01 3 179294683 179294683 G A ACTL6A Nonsense_Mutation p.W250* 0.32 TCGA-CK-5916-01 3 179459992 179459992 G A USP13 Missense_Mutation p.R463H 0.26 tolerated(0.12) benign(0.003) TCGA-CK-5916-01 3 179501990 179501990 A G USP13 3'UTR 0.41 TCGA-CK-5916-01 3 180702379 180702379 A G DNAJC19 3'UTR 0.20 TCGA-CK-5916-01 3 182591672 182591672 G T ATP11B Silent p.G707G 0.19 TCGA-CK-5916-01 3 182988801 182988801 C T B3GNT5 3'UTR 0.26 TCGA-CK-5916-01 3 182989702 182989702 C T B3GNT5 3'UTR 0.29 TCGA-CK-5916-01 3 183963080 183963080 G A ALG3 Missense_Mutation p.R171W 0.29 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 3 184025708 184025708 A G PSMD2 Missense_Mutation p.T777A 0.19 deleterious(0.02) possibly_damaging(0.751) TCGA-CK-5916-01 3 185329480 185329480 G - SENP2 Frame_Shift_Del p.E257Kfs*29 0.19 TCGA-CK-5916-01 3 186522407 186522408 - T RFC4 Frame_Shift_Ins p.N32Kfs*20 0.27 TCGA-CK-5916-01 3 190573137 190573137 G A GMNC Missense_Mutation p.R318C 0.34 tolerated(0.09) benign(0.037) TCGA-CK-5916-01 3 191098622 191098622 C T CCDC50 Silent p.I381I 0.26 TCGA-CK-5916-01 3 194118483 194118483 A G GP5 Silent p.L177L 0.27 TCGA-CK-5916-01 3 194152479 194152479 C T ATP13A3 Silent p.T796T 0.29 TCGA-CK-5916-01 3 196674006 196674006 C T PIGZ 3'UTR 0.31 TCGA-CK-5916-01 3 196674360 196674360 G - PIGZ Frame_Shift_Del p.R470Gfs*30 0.40 TCGA-CK-5916-01 3 20181759 20181759 A T KAT2B Missense_Mutation p.Y636F 0.27 tolerated(0.1) possibly_damaging(0.583) TCGA-CK-5916-01 3 20212569 20212569 C T SGOL1 Missense_Mutation p.A480T 0.34 tolerated(0.56) benign(0.007) TCGA-CK-5916-01 3 24185066 24185066 T C THRB Missense_Mutation p.I222V 0.30 tolerated(0.16) benign(0.031) TCGA-CK-5916-01 3 32994926 32994926 G T CCR4 Silent p.T4T 0.32 TCGA-CK-5916-01 3 33135230 33135230 A G TMPPE Missense_Mutation p.V153A 0.17 tolerated(0.99) benign(0) TCGA-CK-5916-01 3 37536004 37536004 A C ITGA9 Missense_Mutation p.K186T 0.33 deleterious(0.04) possibly_damaging(0.764) TCGA-CK-5916-01 3 38141901 38141901 A - DLEC1 Frame_Shift_Del p.N951Mfs*67 0.33 TCGA-CK-5916-01 3 38519743 38519743 G A ACVR2B Missense_Mutation p.R161Q 0.30 tolerated(0.07) benign(0.086) TCGA-CK-5916-01 3 38622626 38622626 G - SCN5A Frame_Shift_Del p.Y1009Tfs*136 0.39 TCGA-CK-5916-01 3 3887736 3887736 A G LRRN1 Missense_Mutation p.T471A 0.36 tolerated(0.36) benign(0.008) TCGA-CK-5916-01 3 391168 391168 C T CHL1 Silent p.R325R 0.35 TCGA-CK-5916-01 3 39230145 39230145 G A XIRP1 Silent p.N264N 0.39 TCGA-CK-5916-01 3 40299696 40299696 G A MYRIP 3'UTR 0.25 TCGA-CK-5916-01 3 41841705 41841705 A G ULK4 Silent p.F643F 0.27 TCGA-CK-5916-01 3 42949627 42949627 T C ZNF662 Silent p.A68A 0.27 TCGA-CK-5916-01 3 43389294 43389294 A G SNRK Missense_Mutation p.N515D 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.554) TCGA-CK-5916-01 3 4345150 4345150 C T SETMAR Silent p.C32C 0.45 TCGA-CK-5916-01 3 44636417 44636417 A G ZNF660 Silent p.K244K 0.26 TCGA-CK-5916-01 3 44636501 44636501 A C ZNF660 Missense_Mutation p.K272N 0.31 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 3 44929232 44929232 C T TGM4 Missense_Mutation p.T82M 0.34 tolerated(0.05) possibly_damaging(0.681) TCGA-CK-5916-01 3 45557663 45557663 G A LARS2 Missense_Mutation p.G647R 0.31 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 3 47453008 47453008 G T PTPN23 Missense_Mutation p.K1240N 0.35 probably_damaging(0.964) TCGA-CK-5916-01 3 47618362 47618362 C T CSPG5 Missense_Mutation p.G385D 0.32 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 3 47629639 47629639 T C SMARCC1 3'UTR 0.30 TCGA-CK-5916-01 3 47890176 47890176 G A DHX30 Missense_Mutation p.D880N 0.22 tolerated(0.11) possibly_damaging(0.787) TCGA-CK-5916-01 3 47894257 47894257 G A MAP4 3'UTR 0.31 TCGA-CK-5916-01 3 48475235 48475235 C T CCDC51 Missense_Mutation p.R120Q 0.32 tolerated(0.13) benign(0.01) TCGA-CK-5916-01 3 48509033 48509033 C T TREX1 3'UTR 0.34 TCGA-CK-5916-01 3 48601730 48601730 G A COL7A1 3'UTR 0.27 TCGA-CK-5916-01 3 49294434 49294434 C A CCDC36 Missense_Mutation p.L502M 0.34 deleterious(0.03) probably_damaging(0.963) TCGA-CK-5916-01 3 49459910 49459910 G A AMT 5'UTR 0.32 TCGA-CK-5916-01 3 49698006 49698006 G A BSN Missense_Mutation p.A2910T 0.42 unknown(0) TCGA-CK-5916-01 3 49700956 49700956 C - BSN Frame_Shift_Del p.P3790Hfs*5 0.28 TCGA-CK-5916-01 3 50211316 50211316 G A SEMA3F Missense_Mutation p.R68H 0.32 deleterious(0.02) possibly_damaging(0.597) TCGA-CK-5916-01 3 50330948 50330948 T C HYAL3 Splice_Site p.X329_splice 0.33 TCGA-CK-5916-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.31 TCGA-CK-5916-01 3 52538836 52538836 C T STAB1 Nonsense_Mutation p.R441* 0.27 TCGA-CK-5916-01 3 52550119 52550119 G - STAB1 Frame_Shift_Del p.V1339Cfs*252 0.08 TCGA-CK-5916-01 3 52678784 52678784 T - PBRM1 Frame_Shift_Del p.I279Yfs*4 0.26 TCGA-CK-5916-01 3 52857681 52857681 A G ITIH4 Missense_Mutation p.V477A 0.26 deleterious(0) benign(0.289) TCGA-CK-5916-01 3 53699805 53699805 A - CACNA1D Frame_Shift_Del p.M297Cfs*13 0.32 TCGA-CK-5916-01 3 53779718 53779718 T G CACNA1D Missense_Mutation p.L1045R 0.29 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 3 58087939 58087940 - A FLNB Frame_Shift_Ins p.N453Kfs*26 0.26 TCGA-CK-5916-01 3 58110068 58110068 G A FLNB Missense_Mutation p.R1245Q 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-CK-5916-01 3 59737979 59737979 G A FHIT Silent p.A139A 0.35 TCGA-CK-5916-01 3 62188874 62188874 G A PTPRG Missense_Mutation p.D469N 0.28 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 3 63981742 63981742 A G ATXN7 Silent p.S748S 0.31 TCGA-CK-5916-01 3 65361532 65361532 G A MAGI1 Silent p.D1028D 0.30 TCGA-CK-5916-01 3 68802049 68802049 G A FAM19A4 Missense_Mutation p.A84V 0.40 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 3 70014280 70014280 G A MITF Missense_Mutation p.D482N 0.27 tolerated(0.14) benign(0.08) TCGA-CK-5916-01 3 73006459 73006459 G A GXYLT2 Nonsense_Mutation p.W311* 0.31 TCGA-CK-5916-01 3 73433424 73433424 G A PDZRN3 Missense_Mutation p.R765C 0.35 deleterious(0) probably_damaging(0.983) TCGA-CK-5916-01 3 73433631 73433631 C T PDZRN3 Missense_Mutation p.E696K 0.29 deleterious(0) probably_damaging(0.978) TCGA-CK-5916-01 3 78667189 78667189 C T ROBO1 Missense_Mutation p.R1293Q 0.22 tolerated(0.34) probably_damaging(0.945) TCGA-CK-5916-01 3 78710235 78710235 A - ROBO1 Frame_Shift_Del p.F755Lfs*28 0.25 TCGA-CK-5916-01 3 86010735 86010735 A G CADM2 Missense_Mutation p.Y296C 0.33 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 3 87311274 87311274 C T POU1F1 Missense_Mutation p.C210Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-CK-5916-01 3 93779877 93779879 AGA - DHFRL1 In_Frame_Del p.L160del 0.26 TCGA-CK-5916-01 3 93780365 93780365 G A DHFRL1 5'UTR 0.34 TCGA-CK-5916-01 3 97726615 97726615 G A GABRR3 Intron 0.18 TCGA-CK-5916-01 3 9781257 9781257 C T BRPF1 Missense_Mutation p.R392W 0.32 deleterious(0) probably_damaging(0.997) TCGA-CK-5916-01 3 97868711 97868711 G T OR5H14 Missense_Mutation p.G161V 0.08 tolerated(0.12) benign(0.021) TCGA-CK-5916-01 3 98512582 98512582 G A ST3GAL6 Missense_Mutation p.V325I 0.31 tolerated(0.37) benign(0.386) TCGA-CK-5916-01 3 9911904 9911904 C - CIDEC Frame_Shift_Del p.D114Ifs*40 0.33 TCGA-CK-5916-01 3 99514930 99514930 G A COL8A1 Missense_Mutation p.G729R 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5916-01 4 100434324 100434324 T C C4orf17 Missense_Mutation p.V29A 0.32 deleterious(0.03) probably_damaging(0.982) TCGA-CK-5916-01 4 103644076 103644076 G A MANBA Silent p.C167C 0.31 TCGA-CK-5916-01 4 104640583 104640583 G A TACR3 Missense_Mutation p.R84C 0.36 deleterious(0.03) probably_damaging(0.953) TCGA-CK-5916-01 4 106197588 106197588 G T TET2 Missense_Mutation p.R1974M 0.35 deleterious(0.01) possibly_damaging(0.765) TCGA-CK-5916-01 4 114823485 114823487 TTC - ARSJ In_Frame_Del p.K582del 0.22 TCGA-CK-5916-01 4 119475151 119475151 G A CEP170P1 RNA 0.31 TCGA-CK-5916-01 4 123128753 123128753 A G KIAA1109 Missense_Mutation p.D571G 0.28 possibly_damaging(0.665) TCGA-CK-5916-01 4 123855775 123855775 G A SPATA5 Silent p.E343E 0.27 TCGA-CK-5916-01 4 123900412 123900413 - A SPATA5 Frame_Shift_Ins p.Q583Tfs*3 0.21 TCGA-CK-5916-01 4 126241794 126241794 G A FAT4 Missense_Mutation p.V1410M 0.34 probably_damaging(0.996) TCGA-CK-5916-01 4 129120606 129120606 T G LARP1B Silent p.A672A 0.28 TCGA-CK-5916-01 4 1305895 1305895 C T MAEA Silent p.S66S 0.28 TCGA-CK-5916-01 4 134073693 134073693 G A PCDH10 Missense_Mutation p.A800T 0.24 tolerated(0.16) benign(0.001) TCGA-CK-5916-01 4 144481206 144481206 G A SMARCA5 3'Flank 0.36 TCGA-CK-5916-01 4 145580881 145580881 G A HHIP Missense_Mutation p.R241H 0.30 deleterious(0.02) probably_damaging(0.989) TCGA-CK-5916-01 4 145628340 145628340 A G HHIP Missense_Mutation p.D362G 0.32 deleterious(0) possibly_damaging(0.882) TCGA-CK-5916-01 4 149075933 149075933 C T NR3C2 Missense_Mutation p.A712T 0.33 tolerated(0.3) possibly_damaging(0.499) TCGA-CK-5916-01 4 149357261 149357261 G T NR3C2 Missense_Mutation p.P251H 0.35 deleterious_low_confidence(0.01) benign(0.006) TCGA-CK-5916-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.26 TCGA-CK-5916-01 4 152551019 152551019 C T FAM160A1 Missense_Mutation p.R382W 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-CK-5916-01 4 153897060 153897060 G A FHDC1 Missense_Mutation p.G873R 0.37 tolerated(0.09) benign(0.173) TCGA-CK-5916-01 4 155287381 155287381 A - DCHS2 Frame_Shift_Del p.F225Lfs*14 0.27 TCGA-CK-5916-01 4 155410936 155410936 C T DCHS2 Silent p.T524T 0.37 TCGA-CK-5916-01 4 155411147 155411147 G A DCHS2 Missense_Mutation p.A454V 0.31 deleterious_low_confidence(0.05) benign(0.1) TCGA-CK-5916-01 4 155749248 155749248 T C RBM46 3'UTR 0.27 TCGA-CK-5916-01 4 159133799 159133799 T C TMEM144 5'UTR 0.28 TCGA-CK-5916-01 4 160253755 160253755 A - RAPGEF2 Frame_Shift_Del p.S522Vfs*12 0.25 TCGA-CK-5916-01 4 160264243 160264243 A G RAPGEF2 Missense_Mutation p.M850V 0.37 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 4 166418824 166418825 TT - CPE 3'UTR 0.23 TCGA-CK-5916-01 4 169432603 169432603 C T PALLD 5'UTR 0.40 TCGA-CK-5916-01 4 169433291 169433291 A G PALLD Silent p.S212S 0.19 TCGA-CK-5916-01 4 183267834 183267834 T C TENM3 Missense_Mutation p.V88A 0.31 tolerated_low_confidence(0.06) benign(0.418) TCGA-CK-5916-01 4 186317961 186317961 C T ANKRD37 5'UTR 0.27 TCGA-CK-5916-01 4 187209600 187209600 G A F11 Intron 0.27 TCGA-CK-5916-01 4 187627928 187627928 A G FAT1 Silent p.V1018V 0.19 TCGA-CK-5916-01 4 187628366 187628366 G A FAT1 Silent p.S872S 0.26 TCGA-CK-5916-01 4 20255583 20255583 G A SLIT2 Missense_Mutation p.V49M 0.32 deleterious(0.03) possibly_damaging(0.76) TCGA-CK-5916-01 4 2306576 2306576 G A ZFYVE28 Silent p.D497D 0.34 TCGA-CK-5916-01 4 2664904 2664904 T C FAM193A Silent p.S365S 0.22 TCGA-CK-5916-01 4 30724845 30724845 C T PCDH7 Nonsense_Mutation p.Q601* 0.36 TCGA-CK-5916-01 4 3432650 3432650 C - RGS12 Frame_Shift_Del p.Q1363Rfs*30 0.41 TCGA-CK-5916-01 4 37446288 37446288 C T KIAA1239 Missense_Mutation p.A893V 0.39 deleterious(0.01) benign(0.266) TCGA-CK-5916-01 4 38828698 38828699 - T TLR6 3'UTR 0.19 TCGA-CK-5916-01 4 38924399 38924400 - T FAM114A1 Frame_Shift_Ins p.L320Ffs*5 0.21 TCGA-CK-5916-01 4 39254884 39254884 T A WDR19 Missense_Mutation p.S950T 0.40 deleterious(0) probably_damaging(0.967) TCGA-CK-5916-01 4 39280281 39280281 C T WDR19 Intron 0.25 TCGA-CK-5916-01 4 39304183 39304183 A G RFC1 Silent p.G792G 0.29 TCGA-CK-5916-01 4 39776474 39776474 G A UBE2K Missense_Mutation p.R107H 0.29 deleterious(0) possibly_damaging(0.535) TCGA-CK-5916-01 4 40127790 40127790 C A N4BP2 Missense_Mutation p.P1456H 0.30 deleterious(0) benign(0.376) TCGA-CK-5916-01 4 40245252 40245252 C T RHOH Silent p.C82C 0.34 TCGA-CK-5916-01 4 42592857 42592857 G T ATP8A1 Silent p.L165L 0.31 TCGA-CK-5916-01 4 42965062 42965062 G T GRXCR1 Nonsense_Mutation p.E180* 0.33 TCGA-CK-5916-01 4 48027096 48027097 TC - NIPAL1 Frame_Shift_Del p.L21Gfs*11 0.26 TCGA-CK-5916-01 4 48887518 48887519 GA - OCIAD2 Frame_Shift_Del p.Q150Afs*16 0.25 TCGA-CK-5916-01 4 53773654 53773654 G A SCFD2 Silent p.L604L 0.30 TCGA-CK-5916-01 4 5468558 5468558 G A STK32B Silent p.P346P 0.31 TCGA-CK-5916-01 4 57220317 57220317 C T AASDH Missense_Mutation p.R424Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 4 57272846 57272846 C T PPAT Missense_Mutation p.V73I 0.34 tolerated(0.35) benign(0.016) TCGA-CK-5916-01 4 57368112 57368112 G T SRP72 3'UTR 0.25 TCGA-CK-5916-01 4 57898507 57898507 C T IGFBP7 Intron 0.37 TCGA-CK-5916-01 4 619806 619806 G A PDE6B Missense_Mutation p.V131I 0.30 tolerated(0.09) possibly_damaging(0.53) TCGA-CK-5916-01 4 65165689 65165689 T C TECRL Intron 0.31 TCGA-CK-5916-01 4 71824670 71824670 G A MOB1B Missense_Mutation p.A37T 0.33 deleterious(0.05) benign(0.358) TCGA-CK-5916-01 4 73205301 73205301 A G ADAMTS3 Silent p.N257N 0.29 TCGA-CK-5916-01 4 74441817 74441817 T - RASSF6 3'UTR 0.24 TCGA-CK-5916-01 4 75167509 75167509 A - MTHFD2L Frame_Shift_Del p.I345Sfs*48 0.27 TCGA-CK-5916-01 4 75937659 75937659 C T PARM1 Missense_Mutation p.T23I 0.35 tolerated(0.11) benign(0.046) TCGA-CK-5916-01 4 7774512 7774512 C T AFAP1 Intron 0.30 TCGA-CK-5916-01 4 80329104 80329104 T A GK2 Missense_Mutation p.N84I 0.30 deleterious(0) benign(0.285) TCGA-CK-5916-01 4 8216306 8216306 C T SH3TC1 Silent p.L160L 0.28 TCGA-CK-5916-01 4 8307813 8307813 C T HTRA3 Missense_Mutation p.R438W 0.35 deleterious(0.02) probably_damaging(1) TCGA-CK-5916-01 4 84383638 84383638 C T FAM175A Missense_Mutation p.R405Q 0.27 tolerated_low_confidence(1) benign(0.003) TCGA-CK-5916-01 4 85781682 85781682 G A WDFY3 Silent p.N21N 0.30 TCGA-CK-5916-01 4 8616156 8616156 C - CPZ Frame_Shift_Del p.E481Rfs*16 0.38 TCGA-CK-5916-01 4 87028602 87028602 C T MAPK10 Intron 0.21 TCGA-CK-5916-01 4 88035822 88035822 A - AFF1 Frame_Shift_Del p.K614Nfs*39 0.26 TCGA-CK-5916-01 4 88536144 88536144 G A DSPP Missense_Mutation p.S777N 0.32 unknown(0) TCGA-CK-5916-01 4 90857447 90857447 G A MMRN1 Silent p.T872T 0.31 TCGA-CK-5916-01 4 96761887 96761887 G A PDHA2 Missense_Mutation p.A196T 0.30 deleterious(0.03) probably_damaging(0.97) TCGA-CK-5916-01 4 9785349 9785349 G C DRD5 3'UTR 0.19 TCGA-CK-5916-01 5 10227654 10227654 C - FAM173B Frame_Shift_Del p.E201Rfs*3 0.30 TCGA-CK-5916-01 5 108281887 108281887 A - FER Frame_Shift_Del p.I432Lfs*16 0.23 TCGA-CK-5916-01 5 112769894 112769894 G A TSSK1B Missense_Mutation p.P215S 0.23 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 5 113822756 113822756 G A KCNN2 Missense_Mutation p.A422T 0.34 tolerated(0.17) benign(0.002) TCGA-CK-5916-01 5 114607287 114607287 T - CCDC112 Frame_Shift_Del p.R319Gfs*7 0.23 TCGA-CK-5916-01 5 114916572 114916572 C A TMED7-TICAM2 Missense_Mutation p.A297S 0.33 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CK-5916-01 5 115152119 115152119 C T CDO1 5'UTR 0.36 TCGA-CK-5916-01 5 121187847 121187847 C T FTMT Silent p.A63A 0.45 TCGA-CK-5916-01 5 121787095 121787095 C T SNCAIP Silent p.N851N 0.31 TCGA-CK-5916-01 5 122950079 122950079 C T CSNK1G3 Missense_Mutation p.R453C 0.31 tolerated_low_confidence(0.06) benign(0.031) TCGA-CK-5916-01 5 126860497 126860497 G A PRRC1 Silent p.S126S 0.36 TCGA-CK-5916-01 5 131007360 131007360 G A FNIP1 Missense_Mutation p.A926V 0.27 tolerated(0.26) benign(0.004) TCGA-CK-5916-01 5 131671631 131671632 - G SLC22A4 Frame_Shift_Ins p.V463Gfs*33 0.22 TCGA-CK-5916-01 5 132086549 132086549 T C CCNI2 Missense_Mutation p.F212L 0.16 tolerated(1) benign(0) TCGA-CK-5916-01 5 136964100 136964100 A G KLHL3 Missense_Mutation p.Y493H 0.27 deleterious(0.01) possibly_damaging(0.877) TCGA-CK-5916-01 5 137278691 137278691 A G FAM13B Silent p.L799L 0.16 TCGA-CK-5916-01 5 137680935 137680935 C T FAM53C Silent p.H186H 0.36 TCGA-CK-5916-01 5 137680987 137680987 C T FAM53C Nonsense_Mutation p.R204* 0.35 TCGA-CK-5916-01 5 138208649 138208649 T C LRRTM2 3'UTR 0.33 TCGA-CK-5916-01 5 138269548 138269551 CAGA - CTNNA1 Frame_Shift_Del p.T832* 0.33 TCGA-CK-5916-01 5 139742608 139742608 G T SLC4A9 Missense_Mutation p.A331S 0.28 deleterious(0.03) benign(0.014) TCGA-CK-5916-01 5 139938310 139938310 T C APBB3 Missense_Mutation p.M448V 0.27 tolerated(0.91) benign(0) TCGA-CK-5916-01 5 140049060 140049060 G A WDR55 Missense_Mutation p.A325T 0.47 tolerated(0.18) benign(0.002) TCGA-CK-5916-01 5 140203101 140203101 C T PCDHA5 Missense_Mutation p.P581S 0.32 tolerated_low_confidence(0.91) benign(0.066) TCGA-CK-5916-01 5 140229376 140229376 G A PCDHA9 Silent p.S432S 0.70 TCGA-CK-5916-01 5 140256763 140256763 C T PCDHA12 Missense_Mutation p.P569L 0.30 tolerated_low_confidence(0.84) benign(0.005) TCGA-CK-5916-01 5 140574260 140574260 C T PCDHB10 Missense_Mutation p.A712V 0.32 tolerated_low_confidence(0.13) benign(0.172) TCGA-CK-5916-01 5 140574953 140574953 A G PCDHB10 3'UTR 0.29 TCGA-CK-5916-01 5 140589449 140589449 G - PCDHB12 Frame_Shift_Del p.G325Efs*13 0.30 TCGA-CK-5916-01 5 140596821 140596821 A T PCDHB13 3'UTR 0.31 TCGA-CK-5916-01 5 140626853 140626853 C T PCDHB15 Silent p.S569S 0.31 TCGA-CK-5916-01 5 140745388 140745388 G - PCDHGA5 Frame_Shift_Del p.A499Rfs*19 0.26 TCGA-CK-5916-01 5 140772496 140772496 C T PCDHGA8 Missense_Mutation p.T39M 0.25 tolerated_low_confidence(0.25) benign(0.084) TCGA-CK-5916-01 5 140793690 140793690 C T PCDHGA10 Silent p.T316T 0.22 TCGA-CK-5916-01 5 140797654 140797654 C T PCDHGB7 Silent p.S76S 0.33 TCGA-CK-5916-01 5 140801569 140801569 G A PCDHGA11 Missense_Mutation p.G259R 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-5916-01 5 140802964 140802964 C - PCDHGA11 Frame_Shift_Del p.R724Afs*19 0.28 TCGA-CK-5916-01 5 140855950 140855950 C T PCDHGC3 Silent p.N89N 0.26 TCGA-CK-5916-01 5 141019858 141019858 A G RELL2 Missense_Mutation p.H292R 0.23 tolerated_low_confidence(0.07) benign(0.013) TCGA-CK-5916-01 5 141046035 141046035 G - ARAP3 Frame_Shift_Del p.P843Qfs*72 0.35 TCGA-CK-5916-01 5 141314059 141314059 G A KIAA0141 Missense_Mutation p.A353T 0.31 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 5 143354 143354 G A PLEKHG4B Missense_Mutation p.G201E 0.31 deleterious(0.04) probably_damaging(0.96) TCGA-CK-5916-01 5 145552289 145552289 G A LARS Silent p.R58R 0.27 TCGA-CK-5916-01 5 147011061 147011061 C T JAKMIP2 Missense_Mutation p.R597Q 0.27 deleterious(0.01) benign(0.132) TCGA-CK-5916-01 5 147466095 147466095 C T SPINK5 Missense_Mutation p.A137V 0.33 tolerated(0.28) benign(0.002) TCGA-CK-5916-01 5 147774461 147774461 T - FBXO38 Frame_Shift_Del p.F42Lfs*19 0.23 TCGA-CK-5916-01 5 148563152 148563152 G T ABLIM3 Missense_Mutation p.V51L 0.34 deleterious(0.02) possibly_damaging(0.896) TCGA-CK-5916-01 5 149459852 149459852 C T CSF1R Missense_Mutation p.E119K 0.38 tolerated(0.13) benign(0.289) TCGA-CK-5916-01 5 149497284 149497284 C T PDGFRB Missense_Mutation p.V1012M 0.23 tolerated(0.06) possibly_damaging(0.893) TCGA-CK-5916-01 5 150310663 150310663 A G ZNF300P1 RNA 0.13 TCGA-CK-5916-01 5 150410296 150410296 T - TNIP1 Frame_Shift_Del p.N630Mfs*24 0.24 TCGA-CK-5916-01 5 150512041 150512041 G A ANXA6 Silent p.A244A 0.31 TCGA-CK-5916-01 5 150947720 150947720 G A FAT2 Missense_Mutation p.S258L 0.38 benign(0.009) TCGA-CK-5916-01 5 150947893 150947893 G A FAT2 Silent p.S200S 0.29 TCGA-CK-5916-01 5 156768091 156768091 G A CYFIP2 Missense_Mutation p.A841T 0.28 tolerated(0.53) benign(0.016) TCGA-CK-5916-01 5 156887238 156887238 C T NIPAL4 Silent p.S32S 0.21 TCGA-CK-5916-01 5 16701232 16701232 T C MYO10 Missense_Mutation p.Y1091C 0.27 deleterious_low_confidence(0) benign(0.338) TCGA-CK-5916-01 5 169116302 169116302 A T DOCK2 Missense_Mutation p.I270F 0.29 deleterious(0.05) probably_damaging(0.973) TCGA-CK-5916-01 5 169507218 169507218 G A DOCK2 Missense_Mutation p.A1740T 0.27 tolerated_low_confidence(0.59) benign(0.001) TCGA-CK-5916-01 5 170597192 170597192 C T RANBP17 Missense_Mutation p.T590M 0.29 deleterious(0.01) benign(0.306) TCGA-CK-5916-01 5 170863254 170863254 G A FGF18 Missense_Mutation p.R76H 0.34 tolerated(0.09) possibly_damaging(0.885) TCGA-CK-5916-01 5 172518008 172518008 A - CREBRF Frame_Shift_Del p.M279Wfs*22 0.32 TCGA-CK-5916-01 5 172745042 172745042 G A STC2 Silent p.H239H 0.22 TCGA-CK-5916-01 5 172755221 172755221 G A STC2 5'UTR 0.28 TCGA-CK-5916-01 5 176308813 176308814 - C HK3 Frame_Shift_Ins p.E758Gfs*38 0.29 TCGA-CK-5916-01 5 176797920 176797920 C T RGS14 Missense_Mutation p.A381V 0.33 deleterious(0.02) benign(0.003) TCGA-CK-5916-01 5 178413704 178413704 C T GRM6 Silent p.L517L 0.32 TCGA-CK-5916-01 5 179331752 179331752 C T TBC1D9B Missense_Mutation p.R60H 0.29 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 5 180030119 180030119 C T FLT4 3'UTR 0.33 TCGA-CK-5916-01 5 230999 230999 G T SDHA Missense_Mutation p.G260V 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-CK-5916-01 5 32404047 32404047 C T ZFR Silent p.A396A 0.30 TCGA-CK-5916-01 5 33937206 33937206 G A RXFP3 Missense_Mutation p.V121I 0.30 tolerated(0.2) benign(0.285) TCGA-CK-5916-01 5 35654647 35654647 C A SPEF2 Missense_Mutation p.S266Y 0.25 deleterious(0.01) possibly_damaging(0.786) TCGA-CK-5916-01 5 35740260 35740260 C T SPEF2 Missense_Mutation p.P1074L 0.26 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 5 36035845 36035845 C T UGT3A2 Missense_Mutation p.M509I 0.29 tolerated(0.16) benign(0.004) TCGA-CK-5916-01 5 41142893 41142893 T C C6 3'UTR 0.25 TCGA-CK-5916-01 5 52206100 52206100 C T ITGA1 Missense_Mutation p.R570C 0.31 deleterious(0) probably_damaging(0.957) TCGA-CK-5916-01 5 5222991 5222991 T C ADAMTS16 Silent p.H565H 0.28 TCGA-CK-5916-01 5 5237111 5237111 G A ADAMTS16 Missense_Mutation p.A685T 0.27 deleterious(0) probably_damaging(0.995) TCGA-CK-5916-01 5 53815021 53815022 - C SNX18 Frame_Shift_Ins p.A416Rfs*5 0.28 TCGA-CK-5916-01 5 5462753 5462753 G - KIAA0947 Frame_Shift_Del p.G1104Efs*6 0.28 TCGA-CK-5916-01 5 54635866 54635866 A G SKIV2L2 Missense_Mutation p.K182E 0.24 deleterious(0.03) possibly_damaging(0.788) TCGA-CK-5916-01 5 54720890 54720890 C T PPAP2A 3'UTR 0.39 TCGA-CK-5916-01 5 55056087 55056087 C A DDX4 Silent p.R63R 0.29 TCGA-CK-5916-01 5 55412604 55412604 G C ANKRD55 Missense_Mutation p.P268R 0.29 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 5 55412615 55412615 G A ANKRD55 Intron 0.30 TCGA-CK-5916-01 5 58511744 58511744 A G PDE4D Missense_Mutation p.M169T 0.27 deleterious_low_confidence(0.04) benign(0.008) TCGA-CK-5916-01 5 60067734 60067734 T C ELOVL7 Missense_Mutation p.Y84C 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-CK-5916-01 5 60188643 60188643 C T ERCC8 Intron 0.10 TCGA-CK-5916-01 5 60224713 60224713 T C ERCC8 Missense_Mutation p.I51V 0.27 tolerated(0.12) benign(0.221) TCGA-CK-5916-01 5 63665531 63665531 C T RNF180 Missense_Mutation p.R557C 0.31 deleterious(0.03) possibly_damaging(0.876) TCGA-CK-5916-01 5 66460998 66460998 C T MAST4 Silent p.S1997S 0.29 TCGA-CK-5916-01 5 6652110 6652110 G A SRD5A1 Missense_Mutation p.R150H 0.36 tolerated(0.16) benign(0.262) TCGA-CK-5916-01 5 71756478 71756478 C T ZNF366 Silent p.A282A 0.36 TCGA-CK-5916-01 5 72201211 72201211 C T TNPO1 Missense_Mutation p.R891C 0.33 deleterious(0) possibly_damaging(0.711) TCGA-CK-5916-01 5 74326609 74326609 G A GCNT4 5'UTR 0.29 TCGA-CK-5916-01 5 75581107 75581107 G A SV2C Missense_Mutation p.R345Q 0.30 deleterious(0.04) benign(0.22) TCGA-CK-5916-01 5 78378742 78378742 A G BHMT2 Missense_Mutation p.I187M 0.27 deleterious(0.03) possibly_damaging(0.492) TCGA-CK-5916-01 5 79089414 79089414 C T CMYA5 Missense_Mutation p.H3982Y 0.32 probably_damaging(0.978) TCGA-CK-5916-01 5 79361256 79361256 C T THBS4 Nonsense_Mutation p.R384* 0.31 TCGA-CK-5916-01 5 79809445 79809445 T C FAM151B Silent p.A58A 0.26 TCGA-CK-5916-01 5 79854404 79854405 - T ANKRD34B Frame_Shift_Ins p.V479Sfs*11 0.23 TCGA-CK-5916-01 5 80600690 80600690 G C ZCCHC9 Missense_Mutation p.K38N 0.30 tolerated(0.12) benign(0.002) TCGA-CK-5916-01 5 82875982 82875982 G A VCAN Splice_Site p.X3355_splice 0.34 TCGA-CK-5916-01 5 891919 891919 C T BRD9 Missense_Mutation p.G35R 0.30 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 5 94001564 94001564 A G ANKRD32 Splice_Site p.X457_splice 0.21 TCGA-CK-5916-01 5 94024260 94024260 G C ANKRD32 Missense_Mutation p.G724A 0.33 tolerated(0.75) benign(0.029) TCGA-CK-5916-01 5 96253291 96253291 G A ERAP2 Nonsense_Mutation p.W955* 0.20 TCGA-CK-5916-01 5 98236708 98236709 - TCA CHD1 In_Frame_Ins p.D221dup 0.28 TCGA-CK-5916-01 6 101315861 101315861 G A ASCC3 Missense_Mutation p.R5C 0.29 deleterious(0.03) probably_damaging(0.988) TCGA-CK-5916-01 6 102247588 102247588 G T GRIK2 Missense_Mutation p.Q339H 0.26 deleterious(0.01) possibly_damaging(0.881) TCGA-CK-5916-01 6 102511912 102511912 T - GRIK2 Intron 0.26 TCGA-CK-5916-01 6 10529450 10529450 C T GCNT2 Silent p.T102T 0.39 TCGA-CK-5916-01 6 10818185 10818185 T C MAK Missense_Mutation p.H59R 0.31 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 6 111587452 111587452 C T KIAA1919 Silent p.A229A 0.32 TCGA-CK-5916-01 6 111689017 111689017 T - REV3L Frame_Shift_Del p.I1992Lfs*2 0.26 TCGA-CK-5916-01 6 111710343 111710343 A G REV3L Silent p.N276N 0.30 TCGA-CK-5916-01 6 11232853 11232853 G A NEDD9 5'UTR 0.28 TCGA-CK-5916-01 6 116277749 116277749 A G FRK Missense_Mutation p.L275P 0.25 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 6 117250017 117250017 C - RFX6 Frame_Shift_Del p.Y834Tfs*11 0.27 TCGA-CK-5916-01 6 117724437 117724437 C T ROS1 Missense_Mutation p.V148M 0.30 deleterious(0.02) possibly_damaging(0.566) TCGA-CK-5916-01 6 117725498 117725498 T A ROS1 Missense_Mutation p.K128I 0.32 deleterious(0.01) probably_damaging(0.973) TCGA-CK-5916-01 6 12120819 12120819 T A HIVEP1 Missense_Mutation p.V264D 0.25 deleterious(0.04) possibly_damaging(0.548) TCGA-CK-5916-01 6 123317819 123317819 C T CLVS2 5'UTR 0.30 TCGA-CK-5916-01 6 123850308 123850308 A - TRDN Intron 0.17 TCGA-CK-5916-01 6 127837130 127837130 G A SOGA3 Silent p.G210G 0.67 TCGA-CK-5916-01 6 132271276 132271276 C T CTGF Missense_Mutation p.G189D 0.35 deleterious(0.04) possibly_damaging(0.613) TCGA-CK-5916-01 6 133777766 133777766 T C EYA4 Missense_Mutation p.L117P 0.24 tolerated(0.06) probably_damaging(1) TCGA-CK-5916-01 6 134212976 134212976 G - TCF21 3'UTR 0.35 TCGA-CK-5916-01 6 134350334 134350334 T C SLC2A12 Missense_Mutation p.Q210R 0.24 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 6 137245354 137245354 C T SLC35D3 Silent p.F257F 0.32 TCGA-CK-5916-01 6 13978218 13978218 G A RNF182 3'UTR 0.30 TCGA-CK-5916-01 6 144507948 144507948 G A STX11 Missense_Mutation p.V62M 0.29 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 6 144508645 144508645 G A STX11 3'UTR 0.41 TCGA-CK-5916-01 6 150001540 150001540 T - LATS1 Frame_Shift_Del p.E689Nfs*18 0.27 TCGA-CK-5916-01 6 150267588 150267588 G A ULBP2 Missense_Mutation p.D144N 0.29 tolerated(1) benign(0.002) TCGA-CK-5916-01 6 151686585 151686585 T C ZBTB2 3'UTR 0.35 TCGA-CK-5916-01 6 152476160 152476160 C T SYNE1 Missense_Mutation p.R7999Q 0.31 possibly_damaging(0.588) TCGA-CK-5916-01 6 153296245 153296245 T A FBXO5 Missense_Mutation p.L205F 0.33 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 6 154414474 154414474 C T OPRM1 Intron 0.35 TCGA-CK-5916-01 6 161139770 161139770 C A PLG Silent p.A332A 0.22 TCGA-CK-5916-01 6 163987695 163987695 T - QKI Intron 0.22 TCGA-CK-5916-01 6 166872962 166872962 G A RPS6KA2 Silent p.P358P 0.28 TCGA-CK-5916-01 6 169648841 169648841 C T THBS2 Missense_Mutation p.G94S 0.33 tolerated(0.06) benign(0.002) TCGA-CK-5916-01 6 170628066 170628066 C G FAM120B Missense_Mutation p.Q530E 0.32 tolerated_low_confidence(0.35) benign(0.087) TCGA-CK-5916-01 6 170700206 170700206 G A FAM120B Missense_Mutation p.A866T 0.31 tolerated(1) benign(0.006) TCGA-CK-5916-01 6 17804721 17804721 T - KIF13A Frame_Shift_Del p.K775Nfs*30 0.27 TCGA-CK-5916-01 6 18122370 18122370 T C NHLRC1 Silent p.S156S 0.17 TCGA-CK-5916-01 6 18222307 18222307 A - KDM1B 3'UTR 0.23 TCGA-CK-5916-01 6 18258232 18258232 G A DEK Silent p.T103T 0.30 TCGA-CK-5916-01 6 20490526 20490526 G A E2F3 Silent p.P421P 0.32 TCGA-CK-5916-01 6 24403254 24403254 C T MRS2 5'UTR 0.39 TCGA-CK-5916-01 6 25770480 25770480 G A SLC17A4 Silent p.A161A 0.28 TCGA-CK-5916-01 6 26032174 26032174 G A HIST1H3B Missense_Mutation p.P39S 0.33 deleterious_low_confidence(0) benign(0.008) TCGA-CK-5916-01 6 26217174 26217177 GTTA - HIST1H2AE 5'UTR 0.38 TCGA-CK-5916-01 6 26250619 26250619 A G HIST1H3F Missense_Mutation p.V72A 0.30 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CK-5916-01 6 28227664 28227664 C T NKAPL Missense_Mutation p.S172L 0.31 tolerated(0.14) unknown(0) TCGA-CK-5916-01 6 29523977 29523977 G A UBD Missense_Mutation p.R60W 0.26 deleterious(0.01) possibly_damaging(0.809) TCGA-CK-5916-01 6 29572296 29572296 C T GABBR1 Missense_Mutation p.R896H 0.16 tolerated(0.27) possibly_damaging(0.682) TCGA-CK-5916-01 6 30153578 30153579 - C TRIM26 3'UTR 0.10 TCGA-CK-5916-01 6 30229063 30229063 T G HCG17 Intron 0.25 TCGA-CK-5916-01 6 30572779 30572779 C T PPP1R10 Missense_Mutation p.A316T 0.34 tolerated(0.16) benign(0.43) TCGA-CK-5916-01 6 3083465 3083465 C T RIPK1 Silent p.N202N 0.47 TCGA-CK-5916-01 6 31238208 31238208 A G HLA-C Missense_Mutation p.L225P 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-CK-5916-01 6 31526337 31526337 A C NFKBIL1 Silent p.A365A 0.20 TCGA-CK-5916-01 6 31619438 31619438 C - BAG6 Frame_Shift_Del p.A35Pfs*3 0.27 TCGA-CK-5916-01 6 31836974 31836974 G - SLC44A4 Frame_Shift_Del p.G398Afs*7 0.23 TCGA-CK-5916-01 6 32118605 32118605 G A PRRT1 Missense_Mutation p.P33L 0.24 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-CK-5916-01 6 32917093 32917093 C T HLA-DMA Missense_Mutation p.V246M 0.26 tolerated(0.06) benign(0.243) TCGA-CK-5916-01 6 33284128 33284128 G A ZBTB22 Missense_Mutation p.A189V 0.34 tolerated(0.42) benign(0.001) TCGA-CK-5916-01 6 33635675 33635675 A - ITPR3 Frame_Shift_Del p.K608Sfs*66 0.30 TCGA-CK-5916-01 6 34512160 34512160 G A SPDEF Missense_Mutation p.R25W 0.27 tolerated_low_confidence(0.19) possibly_damaging(0.8) TCGA-CK-5916-01 6 35210459 35210459 G A SCUBE3 Missense_Mutation p.R532Q 0.35 tolerated(0.06) benign(0.048) TCGA-CK-5916-01 6 35392353 35392353 C T PPARD Missense_Mutation p.A292V 0.30 tolerated(0.67) possibly_damaging(0.901) TCGA-CK-5916-01 6 35392655 35392655 G T PPARD Intron 0.35 TCGA-CK-5916-01 6 35466013 35466013 G A TULP1 3'UTR 0.25 TCGA-CK-5916-01 6 36198581 36198581 G A BRPF3 3'UTR 0.27 TCGA-CK-5916-01 6 36929669 36929669 G A PI16 Missense_Mutation p.V171M 0.37 tolerated(0.08) benign(0.415) TCGA-CK-5916-01 6 39895341 39895341 A G MOCS1 5'UTR 0.40 TCGA-CK-5916-01 6 41002834 41002834 G A UNC5CL 5'UTR 0.40 TCGA-CK-5916-01 6 42146037 42146037 T C GUCA1A Missense_Mutation p.M74T 0.26 deleterious(0.04) probably_damaging(0.994) TCGA-CK-5916-01 6 42227272 42227272 C T TRERF1 Missense_Mutation p.V692I 0.36 tolerated(0.8) benign(0.103) TCGA-CK-5916-01 6 42985660 42985660 G - KLHDC3 Frame_Shift_Del p.C134Lfs*3 0.26 TCGA-CK-5916-01 6 42992814 42992814 T C RRP36 Silent p.P74P 0.31 TCGA-CK-5916-01 6 43272011 43272011 G A SLC22A7 Intron 0.37 TCGA-CK-5916-01 6 44197172 44197174 GCT - SLC29A1 In_Frame_Del p.L27del 0.38 TCGA-CK-5916-01 6 44217281 44217281 T C HSP90AB1 Silent p.I105I 0.33 TCGA-CK-5916-01 6 45390355 45390355 C - RUNX2 Frame_Shift_Del p.S31Pfs*9 0.28 TCGA-CK-5916-01 6 46632617 46632617 A G SLC25A27 Missense_Mutation p.M205V 0.25 deleterious(0.01) possibly_damaging(0.588) TCGA-CK-5916-01 6 47682887 47682887 A T GPR115 Missense_Mutation p.I636F 0.31 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 6 47976421 47976421 T C PTCHD4 Missense_Mutation p.T286A 0.29 tolerated(0.18) possibly_damaging(0.742) TCGA-CK-5916-01 6 5086892 5086892 G A PPP1R3G 3'UTR 0.43 TCGA-CK-5916-01 6 51735410 51735410 T G PKHD1 Missense_Mutation p.K2460Q 0.36 tolerated(0.13) benign(0.208) TCGA-CK-5916-01 6 53519149 53519149 G A KLHL31 Nonsense_Mutation p.R308* 0.30 TCGA-CK-5916-01 6 56382028 56382028 C T DST Missense_Mutation p.A3486T 0.32 benign(0.001) TCGA-CK-5916-01 6 70423652 70423652 C T LMBRD1 Missense_Mutation p.R267H 0.29 tolerated(0.11) benign(0.058) TCGA-CK-5916-01 6 71232220 71232220 G A FAM135A Missense_Mutation p.R345H 0.24 deleterious(0) probably_damaging(0.975) TCGA-CK-5916-01 6 73902392 73902392 G A KCNQ5 Missense_Mutation p.R624Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CK-5916-01 6 74117732 74117732 A - DDX43 Frame_Shift_Del p.G365Vfs*2 0.25 TCGA-CK-5916-01 6 76023075 76023075 G A FILIP1 Missense_Mutation p.R825W 0.31 deleterious(0) probably_damaging(0.977) TCGA-CK-5916-01 6 78172880 78172880 G A HTR1B Missense_Mutation p.H81Y 0.27 deleterious(0) probably_damaging(0.943) TCGA-CK-5916-01 6 80745080 80745080 C T TTK Missense_Mutation p.R624C 0.32 deleterious(0.01) benign(0.167) TCGA-CK-5916-01 6 83892656 83892656 A G PGM3 Missense_Mutation p.Y195H 0.31 tolerated(0.52) possibly_damaging(0.617) TCGA-CK-5916-01 6 84302178 84302178 A C SNAP91 Missense_Mutation p.F642L 0.43 tolerated(0.16) probably_damaging(0.914) TCGA-CK-5916-01 6 87971111 87971111 A T ZNF292 Silent p.P2588P 0.30 TCGA-CK-5916-01 6 88411199 88411199 G - AKIRIN2 Frame_Shift_Del p.F69Sfs*17 0.31 TCGA-CK-5916-01 6 89322389 89322389 T - RNGTT 3'UTR 0.25 TCGA-CK-5916-01 6 90504332 90504333 AC - MDN1 Frame_Shift_Del p.V173Pfs*7 0.21 TCGA-CK-5916-01 6 90605470 90605470 G A GJA10 Missense_Mutation p.R428H 0.40 tolerated(0.11) benign(0.064) TCGA-CK-5916-01 6 96657758 96657758 C - FUT9 3'UTR 0.19 TCGA-CK-5916-01 6 99285361 99285361 T - POU3F2 3'UTR 0.32 TCGA-CK-5916-01 7 100028487 100028487 C - MEPCE Frame_Shift_Del p.V284Cfs*154 0.35 TCGA-CK-5916-01 7 100304826 100304826 C T POP7 Missense_Mutation p.R125C 0.29 deleterious(0) benign(0.417) TCGA-CK-5916-01 7 100334177 100334177 G A ZAN Missense_Mutation p.D60N 0.34 possibly_damaging(0.624) TCGA-CK-5916-01 7 100411324 100411324 C T EPHB4 Missense_Mutation p.G569E 0.32 tolerated(0.73) benign(0.021) TCGA-CK-5916-01 7 100675947 100675947 C A MUC17 Missense_Mutation p.P417H 0.34 probably_damaging(0.994) TCGA-CK-5916-01 7 100817964 100817964 G A NAT16 Missense_Mutation p.S42L 0.26 tolerated(0.06) benign(0.361) TCGA-CK-5916-01 7 100888348 100888348 G A FIS1 5'UTR 0.42 TCGA-CK-5916-01 7 101960924 101960924 G A SH2B2 Missense_Mutation p.D547N 0.50 deleterious(0.02) benign(0.195) TCGA-CK-5916-01 7 102036927 102036927 C - PRKRIP1 Frame_Shift_Del p.K25Rfs*15 0.53 TCGA-CK-5916-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.21 TCGA-CK-5916-01 7 103828732 103828732 A G ORC5 Silent p.T217T 0.25 TCGA-CK-5916-01 7 107414365 107414365 C T SLC26A3 Silent p.S669S 0.29 TCGA-CK-5916-01 7 107427332 107427332 G A SLC26A3 Missense_Mutation p.S304F 0.31 deleterious(0) probably_damaging(0.976) TCGA-CK-5916-01 7 107555996 107555996 T - DLD Frame_Shift_Del p.L245* 0.25 TCGA-CK-5916-01 7 108155597 108155597 C A PNPLA8 Missense_Mutation p.K113N 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-CK-5916-01 7 1097512 1097512 G A GPR146 Missense_Mutation p.A121T 0.38 tolerated(0.66) benign(0.057) TCGA-CK-5916-01 7 111368601 111368601 G A DOCK4 Missense_Mutation p.P1877L 0.35 tolerated_low_confidence(0.15) possibly_damaging(0.775) TCGA-CK-5916-01 7 111462469 111462469 C T DOCK4 Missense_Mutation p.R960H 0.36 deleterious(0.01) benign(0.416) TCGA-CK-5916-01 7 111936315 111936315 C T ZNF277 Silent p.D138D 0.28 TCGA-CK-5916-01 7 112424958 112424958 C T TMEM168 5'UTR 0.30 TCGA-CK-5916-01 7 1131431 1131431 G C GPER1 Missense_Mutation p.A23P 0.24 tolerated_low_confidence(0.3) benign(0.003) TCGA-CK-5916-01 7 1132221 1132221 G A GPER1 Missense_Mutation p.R286Q 0.15 tolerated(0.7) benign(0.009) TCGA-CK-5916-01 7 113559050 113559051 - T PPP1R3A Frame_Shift_Ins p.M1? 0.25 TCGA-CK-5916-01 7 116199090 116199090 A G CAV1 Missense_Mutation p.K96E 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 7 117431524 117431524 C A CTTNBP2 Missense_Mutation p.G576W 0.31 deleterious(0) probably_damaging(0.994) TCGA-CK-5916-01 7 123190585 123190585 T - NDUFA5 Frame_Shift_Del p.N41Mfs*28 0.23 TCGA-CK-5916-01 7 123334879 123334879 C T WASL Missense_Mutation p.C239Y 0.28 deleterious(0) unknown(0) TCGA-CK-5916-01 7 123509154 123509154 G A HYAL4 Missense_Mutation p.R276H 0.29 tolerated(0.46) benign(0.003) TCGA-CK-5916-01 7 12665401 12665401 C T SCIN Missense_Mutation p.P303S 0.27 tolerated(0.46) benign(0.019) TCGA-CK-5916-01 7 128452224 128452224 A G CCDC136 Missense_Mutation p.Y800C 0.21 tolerated(0.25) benign(0.008) TCGA-CK-5916-01 7 128486941 128486941 G - FLNC Frame_Shift_Del p.R1426Gfs*12 0.32 TCGA-CK-5916-01 7 129098164 129098164 C T STRIP2 Nonsense_Mutation p.R383* 0.34 TCGA-CK-5916-01 7 135292026 135292026 C T NUP205 Silent p.H1034H 0.25 TCGA-CK-5916-01 7 138312986 138312986 T C SVOPL Missense_Mutation p.E329G 0.23 tolerated(0.15) benign(0) TCGA-CK-5916-01 7 138344610 138344610 C A SVOPL Missense_Mutation p.G157W 0.28 deleterious(0) probably_damaging(0.997) TCGA-CK-5916-01 7 140221861 140221861 G A DENND2A Missense_Mutation p.A902V 0.37 tolerated(0.14) probably_damaging(0.976) TCGA-CK-5916-01 7 141536257 141536257 C T PRSS37 Missense_Mutation p.G216S 0.29 tolerated(0.12) probably_damaging(0.975) TCGA-CK-5916-01 7 141619518 141619518 A G OR9A4 Silent p.V281V 0.38 TCGA-CK-5916-01 7 148496415 148496415 C T CUL1 Nonsense_Mutation p.Q729* 0.33 TCGA-CK-5916-01 7 149463244 149463244 G A ZNF467 Missense_Mutation p.S116L 0.40 deleterious(0.02) benign(0.036) TCGA-CK-5916-01 7 149474918 149474918 C - ZNF467 5'Flank 0.41 TCGA-CK-5916-01 7 150094966 150094966 G A ZNF775 Missense_Mutation p.R466H 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 7 150554148 150554148 G A AOC1 Missense_Mutation p.R197H 0.23 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 7 150642433 150642433 G A KCNH2 3'UTR 0.35 TCGA-CK-5916-01 7 150649763 150649763 G A KCNH2 Missense_Mutation p.T436M 0.37 tolerated(0.15) benign(0.172) TCGA-CK-5916-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.49 TCGA-CK-5916-01 7 150748949 150748949 G A ASIC3 Missense_Mutation p.V423M 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-CK-5916-01 7 150774464 150774464 C - FASTK Frame_Shift_Del p.L409Cfs*14 0.41 TCGA-CK-5916-01 7 150883963 150883963 G A ASB10 Silent p.S85S 0.28 TCGA-CK-5916-01 7 150934600 150934602 CTC - CHPF2 In_Frame_Del p.S385del 0.38 TCGA-CK-5916-01 7 151478422 151478422 C T PRKAG2 Silent p.R94R 0.38 TCGA-CK-5916-01 7 151874651 151874651 T C KMT2C Silent p.P2629P 0.25 TCGA-CK-5916-01 7 154863098 154863098 G A HTR5A Silent p.A163A 0.35 TCGA-CK-5916-01 7 155094542 155094542 C T INSIG1 Nonsense_Mutation p.R264* 0.29 TCGA-CK-5916-01 7 158473412 158473412 C T NCAPG2 Splice_Site p.X340_splice 0.29 TCGA-CK-5916-01 7 16745815 16745815 A - BZW2 3'UTR 0.41 TCGA-CK-5916-01 7 17833767 17833767 G A SNX13 Missense_Mutation p.R926C 0.30 tolerated(0.19) benign(0.005) TCGA-CK-5916-01 7 19812180 19812180 G A TMEM196 Missense_Mutation p.S47L 0.29 tolerated(0.06) possibly_damaging(0.519) TCGA-CK-5916-01 7 19812372 19812372 T - TMEM196 5'UTR 0.36 TCGA-CK-5916-01 7 21789960 21789960 C T DNAH11 Missense_Mutation p.A2980V 0.28 benign(0.139) TCGA-CK-5916-01 7 21813556 21813556 T C DNAH11 Missense_Mutation p.V3099A 0.13 benign(0.138) TCGA-CK-5916-01 7 2284215 2284215 C T NUDT1 Silent p.G25G 0.29 TCGA-CK-5916-01 7 23224773 23224773 G - NUPL2 Frame_Shift_Del p.G71Afs*51 0.27 TCGA-CK-5916-01 7 2473276 2473276 C T CHST12 Silent p.I334I 0.44 TCGA-CK-5916-01 7 24756983 24756983 G A DFNA5 Missense_Mutation p.T196M 0.45 tolerated(0.24) benign(0.034) TCGA-CK-5916-01 7 24874132 24874132 C T OSBPL3 Silent p.A573A 0.35 TCGA-CK-5916-01 7 27809323 27809325 AAG - TAX1BP1 In_Frame_Del p.E163del 0.29 TCGA-CK-5916-01 7 29994870 29994870 C T SCRN1 Missense_Mutation p.C109Y 0.29 deleterious(0) probably_damaging(0.914) TCGA-CK-5916-01 7 30129862 30129862 A - PLEKHA8 3'UTR 0.28 TCGA-CK-5916-01 7 3658775 3658775 G A SDK1 Missense_Mutation p.R121H 0.38 deleterious(0) probably_damaging(0.99) TCGA-CK-5916-01 7 4169720 4169720 A G SDK1 Missense_Mutation p.K1374E 0.22 tolerated(0.32) benign(0.011) TCGA-CK-5916-01 7 42005508 42005508 C T GLI3 Missense_Mutation p.G1055S 0.31 tolerated(0.78) benign(0.005) TCGA-CK-5916-01 7 42005906 42005906 G A GLI3 Missense_Mutation p.T922M 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CK-5916-01 7 43687167 43687167 C T COA1 Missense_Mutation p.G28R 0.26 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 7 44741172 44741172 C T OGDH Missense_Mutation p.R864C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 7 45125142 45125142 G T NACAD Missense_Mutation p.P213T 0.38 deleterious(0) possibly_damaging(0.792) TCGA-CK-5916-01 7 45954543 45954543 C T IGFBP3 Missense_Mutation p.C257Y 0.36 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 7 47436482 47436484 GTT - TNS3 In_Frame_Del p.N313del 0.32 TCGA-CK-5916-01 7 4830445 4830445 C - AP5Z1 Frame_Shift_Del p.Q696Rfs*6 0.33 TCGA-CK-5916-01 7 48392053 48392053 G A ABCA13 Missense_Mutation p.A3553T 0.32 probably_damaging(0.991) TCGA-CK-5916-01 7 49842342 49842342 C T VWC2 Silent p.N244N 0.24 TCGA-CK-5916-01 7 5104146 5104148 CTT - RBAK In_Frame_Del p.F354del 0.30 TCGA-CK-5916-01 7 5104798 5104798 G A RBAK Missense_Mutation p.E571K 0.29 tolerated(0.12) probably_damaging(0.984) TCGA-CK-5916-01 7 53104520 53104520 C T POM121L12 3'UTR 0.27 TCGA-CK-5916-01 7 5353202 5353202 C T TNRC18 Silent p.A2440A 0.34 TCGA-CK-5916-01 7 54612441 54612441 C T VSTM2A Missense_Mutation p.P69L 0.27 deleterious(0.01) possibly_damaging(0.757) TCGA-CK-5916-01 7 5643160 5643160 T C FSCN1 Silent p.R341R 0.33 TCGA-CK-5916-01 7 6204984 6204984 G A CYTH3 Silent p.R349R 0.30 TCGA-CK-5916-01 7 65221478 65221478 C T SNORA22 3'Flank 0.29 TCGA-CK-5916-01 7 6547976 6547976 G A GRID2IP Silent p.S728S 0.39 TCGA-CK-5916-01 7 65610471 65610471 C T CRCP Missense_Mutation p.A94V 0.30 deleterious(0.04) possibly_damaging(0.823) TCGA-CK-5916-01 7 66460510 66460510 T C SBDS 5'UTR 0.42 TCGA-CK-5916-01 7 6730596 6730596 T C ZNF12 Silent p.K659K 0.08 TCGA-CK-5916-01 7 72081817 72081817 G A TYW1B Missense_Mutation p.T168I 0.28 deleterious(0) probably_damaging(0.994) TCGA-CK-5916-01 7 72742178 72742178 G A FKBP6 5'Flank 0.18 TCGA-CK-5916-01 7 73256456 73256456 C A WBSCR27 Missense_Mutation p.E5D 0.36 tolerated(0.15) benign(0.004) TCGA-CK-5916-01 7 75045691 75045691 C T POM121C 3'Flank 0.35 TCGA-CK-5916-01 7 75643116 75643116 G A STYXL1 Missense_Mutation p.R133C 0.28 tolerated(0.23) benign(0.051) TCGA-CK-5916-01 7 75959485 75959485 G A YWHAG Silent p.N51N 0.34 TCGA-CK-5916-01 7 83032005 83032005 T C SEMA3E Silent p.G362G 0.30 TCGA-CK-5916-01 7 88965386 88965386 A G ZNF804B Missense_Mutation p.I1030M 0.20 deleterious(0.02) benign(0.219) TCGA-CK-5916-01 7 91603084 91603085 - A AKAP9 Frame_Shift_Ins p.R40Efs*7 0.23 TCGA-CK-5916-01 7 92885827 92885827 A - CCDC132 Frame_Shift_Del p.V104Wfs*4 0.22 TCGA-CK-5916-01 7 94049915 94049915 C T COL1A2 Silent p.N750N 0.33 TCGA-CK-5916-01 7 94298590 94298590 G A PEG10 3'UTR 0.29 TCGA-CK-5916-01 7 96653684 96653684 G A DLX5 Silent p.A84A 0.29 TCGA-CK-5916-01 7 97823188 97823188 C T LMTK2 Silent p.P1137P 0.34 TCGA-CK-5916-01 7 98507832 98507832 C A TRRAP Missense_Mutation p.P502T 0.32 benign(0.006) TCGA-CK-5916-01 7 98530941 98530941 G T TRRAP Missense_Mutation p.E1310D 0.38 benign(0.042) TCGA-CK-5916-01 7 98547151 98547151 G A TRRAP Missense_Mutation p.G1627S 0.30 benign(0.048) TCGA-CK-5916-01 7 98610059 98610059 G A TRRAP 3'UTR 0.30 TCGA-CK-5916-01 7 98984335 98984335 A G ARPC1B Missense_Mutation p.E31G 0.22 deleterious(0.01) benign(0.349) TCGA-CK-5916-01 7 99022819 99022819 C T ATP5J2-PTCD1 Missense_Mutation p.G495R 0.33 tolerated(0.74) benign(0.008) TCGA-CK-5916-01 7 99500890 99500890 C T TRIM4 Silent p.K290K 0.31 TCGA-CK-5916-01 8 101174578 101174578 C T SPAG1 Missense_Mutation p.H24Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 8 103291141 103291141 A - UBR5 Frame_Shift_Del p.F2067Lfs*19 0.24 TCGA-CK-5916-01 8 103564113 103564113 C T ODF1 Missense_Mutation p.P53L 0.30 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CK-5916-01 8 103572819 103572819 C T ODF1 Missense_Mutation p.R154W 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-CK-5916-01 8 10470610 10470610 C T RP1L1 Missense_Mutation p.G333D 0.38 probably_damaging(0.995) TCGA-CK-5916-01 8 109796254 109796256 AGA - TMEM74 3'UTR 0.35 TCGA-CK-5916-01 8 110424557 110424557 A - PKHD1L1 Frame_Shift_Del p.N718Tfs*31 0.26 TCGA-CK-5916-01 8 113256645 113256645 A G CSMD3 Silent p.T3460T 0.26 TCGA-CK-5916-01 8 113301669 113301669 G A CSMD3 Missense_Mutation p.R3025C 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-CK-5916-01 8 113353789 113353789 A - CSMD3 Frame_Shift_Del p.L2190Yfs*46 0.24 TCGA-CK-5916-01 8 118817028 118817028 G A EXT1 Missense_Mutation p.A663V 0.25 tolerated(0.11) possibly_damaging(0.529) TCGA-CK-5916-01 8 126056120 126056120 C T KIAA0196 Missense_Mutation p.A933T 0.26 tolerated(0.38) possibly_damaging(0.857) TCGA-CK-5916-01 8 128428299 128428300 - C POU5F1B Frame_Shift_Ins p.P66Afs*3 0.35 TCGA-CK-5916-01 8 12881554 12881554 T C KIAA1456 3'UTR 0.21 TCGA-CK-5916-01 8 133090117 133090118 - T HHLA1 Frame_Shift_Ins p.P379Tfs*33 0.26 TCGA-CK-5916-01 8 133858334 133858334 T C PHF20L1 3'UTR 0.43 TCGA-CK-5916-01 8 135614240 135614240 G T ZFAT Silent p.P574P 0.38 TCGA-CK-5916-01 8 135817117 135817117 C T MIR30D 3'Flank 0.19 TCGA-CK-5916-01 8 139890301 139890301 G A COL22A1 Missense_Mutation p.T117M 0.36 unknown(0) TCGA-CK-5916-01 8 142225871 142225871 T C SLC45A4 Missense_Mutation p.H592R 0.19 deleterious(0) probably_damaging(0.947) TCGA-CK-5916-01 8 142437071 142437071 C T PTP4A3 Silent p.P77P 0.21 TCGA-CK-5916-01 8 143856718 143856718 T C LYNX1 Intron 0.32 TCGA-CK-5916-01 8 144378010 144378010 C T ZNF696 Silent p.P55P 0.16 TCGA-CK-5916-01 8 144650398 144650398 C T MROH6 Missense_Mutation p.A560T 0.23 tolerated(0.2) probably_damaging(0.968) TCGA-CK-5916-01 8 144802976 144802976 G A MAPK15 Missense_Mutation p.A295T 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 8 144877669 144877669 G A SCRIB Missense_Mutation p.A1212V 0.62 benign(0.086) TCGA-CK-5916-01 8 145057100 145057100 A G PARP10 Silent p.R852R 0.27 TCGA-CK-5916-01 8 145059812 145059812 G A PARP10 Silent p.V147V 0.34 TCGA-CK-5916-01 8 146157370 146157370 C T ZNF16 Missense_Mutation p.S268N 0.29 tolerated(1) benign(0.004) TCGA-CK-5916-01 8 16853171 16853171 T A FGF20 Missense_Mutation p.Y128F 0.32 deleterious(0.05) benign(0.363) TCGA-CK-5916-01 8 16859345 16859345 C T FGF20 Missense_Mutation p.R66H 0.33 deleterious(0.01) possibly_damaging(0.463) TCGA-CK-5916-01 8 16859622 16859622 T G FGF20 5'UTR 0.35 TCGA-CK-5916-01 8 17089982 17089982 C T CNOT7 Missense_Mutation p.G228E 0.21 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 8 17920713 17920713 C T ASAH1 Missense_Mutation p.D178N 0.24 deleterious(0) probably_damaging(0.998) TCGA-CK-5916-01 8 18729303 18729303 A G PSD3 Silent p.T357T 0.16 TCGA-CK-5916-01 8 20038444 20038444 C T SLC18A1 Missense_Mutation p.R11Q 0.24 tolerated(0.48) benign(0.001) TCGA-CK-5916-01 8 21965174 21965174 C A NUDT18 Missense_Mutation p.W203C 0.35 deleterious(0) probably_damaging(0.973) TCGA-CK-5916-01 8 21982972 21982972 G T HR Silent p.T534T 0.24 TCGA-CK-5916-01 8 22053004 22053004 G A BMP1 Missense_Mutation p.G557R 0.37 deleterious(0) possibly_damaging(0.596) TCGA-CK-5916-01 8 22479074 22479074 T C BIN3 Missense_Mutation p.Y208C 0.24 deleterious(0.02) probably_damaging(1) TCGA-CK-5916-01 8 23003376 23003376 T C TNFRSF10D Missense_Mutation p.K181E 0.22 tolerated(0.74) benign(0.03) TCGA-CK-5916-01 8 27729379 27729379 G A SCARA5 3'UTR 0.26 TCGA-CK-5916-01 8 3019756 3019756 G C CSMD1 Missense_Mutation p.N1923K 0.20 benign(0.376) TCGA-CK-5916-01 8 3165913 3165913 G A CSMD1 Silent p.Y1248Y 0.19 TCGA-CK-5916-01 8 33310939 33310939 C T FUT10 Silent p.T57T 0.32 TCGA-CK-5916-01 8 36721919 36721919 C A KCNU1 Intron 0.31 TCGA-CK-5916-01 8 38827163 38827163 G A PLEKHA2 Silent p.T380T 0.41 TCGA-CK-5916-01 8 38853262 38853262 C A TM2D2 Intron 0.33 TCGA-CK-5916-01 8 42587571 42587571 A - CHRNB3 Frame_Shift_Del p.K376Rfs*13 0.27 TCGA-CK-5916-01 8 48739395 48739395 G A PRKDC Silent p.L2868L 0.35 TCGA-CK-5916-01 8 52321400 52321400 G T PXDNL Silent p.P928P 0.27 TCGA-CK-5916-01 8 53477878 53477878 G A FAM150A 5'UTR 0.38 TCGA-CK-5916-01 8 55537426 55537426 C T RP1 Silent p.D328D 0.23 TCGA-CK-5916-01 8 57354336 57354336 T C PENK Missense_Mutation p.Y100C 0.13 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 8 61655080 61655080 C T CHD7 Silent p.H363H 0.34 TCGA-CK-5916-01 8 6371239 6371239 A G ANGPT2 Missense_Mutation p.Y387H 0.20 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 8 67342208 67342208 A C RRS1 Missense_Mutation p.Q281P 0.26 tolerated(0.08) benign(0.002) TCGA-CK-5916-01 8 67590073 67590073 G A C8orf44 Missense_Mutation p.V44I 0.37 tolerated_low_confidence(0.06) benign(0.024) TCGA-CK-5916-01 8 67590077 67590077 T C C8orf44 Missense_Mutation p.I45T 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.702) TCGA-CK-5916-01 8 67786313 67786313 C T MCMDC2 5'UTR 0.35 TCGA-CK-5916-01 8 67786698 67786699 - A MCMDC2 Intron 0.29 TCGA-CK-5916-01 8 68864646 68864646 G A PREX2 Missense_Mutation p.R6H 0.33 tolerated_low_confidence(0.3) benign(0.13) TCGA-CK-5916-01 8 69351618 69351618 T C C8orf34 Intron 0.20 TCGA-CK-5916-01 8 72981394 72981394 T C TRPA1 Missense_Mutation p.H103R 0.33 deleterious(0) probably_damaging(0.95) TCGA-CK-5916-01 8 73849767 73849767 C T KCNB2 Missense_Mutation p.A726V 0.35 tolerated_low_confidence(0.12) benign(0.081) TCGA-CK-5916-01 8 74526095 74526096 - T STAU2 Frame_Shift_Ins p.L259Tfs*15 0.24 TCGA-CK-5916-01 8 77765162 77765162 C T ZFHX4 Missense_Mutation p.T2002M 0.28 possibly_damaging(0.897) TCGA-CK-5916-01 8 8176265 8176265 C A SGK223 Missense_Mutation p.R1207L 0.26 probably_damaging(0.995) TCGA-CK-5916-01 8 86027387 86027387 C T LRRCC1 Silent p.C199C 0.27 TCGA-CK-5916-01 8 88886215 88886215 T C DCAF4L2 5'UTR 0.27 TCGA-CK-5916-01 8 91072389 91072389 C T CALB1 3'UTR 0.28 TCGA-CK-5916-01 8 95272558 95272558 C T GEM Nonsense_Mutation p.W58* 0.38 TCGA-CK-5916-01 8 9564338 9564338 T C TNKS Silent p.N429N 0.17 TCGA-CK-5916-01 8 9627725 9627725 G A TNKS Missense_Mutation p.V1284I 0.28 tolerated(0.11) possibly_damaging(0.625) TCGA-CK-5916-01 8 98289735 98289735 G A TSPYL5 Missense_Mutation p.S113L 0.39 tolerated(0.05) benign(0.003) TCGA-CK-5916-01 8 98943616 98943616 C T MATN2 Missense_Mutation p.A193V 0.32 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 8 99140651 99140651 C A POP1 Silent p.T123T 0.32 TCGA-CK-5916-01 8 99440610 99440610 T C KCNS2 Missense_Mutation p.W135R 0.10 tolerated(0.09) probably_damaging(0.994) TCGA-CK-5916-01 8 99441334 99441334 G A KCNS2 Missense_Mutation p.G376E 0.28 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 9 100070280 100070280 C T CCDC180 Missense_Mutation p.H23Y 0.24 tolerated_low_confidence(0.1) benign(0.005) TCGA-CK-5916-01 9 100136833 100136833 C - CCDC180 Frame_Shift_Del p.K1583Nfs*17 0.36 TCGA-CK-5916-01 9 102607026 102607026 C T NR4A3 Silent p.S461S 0.33 TCGA-CK-5916-01 9 102677514 102677514 T G STX17 5'UTR 0.08 TCGA-CK-5916-01 9 102784352 102784352 C T ERP44 Missense_Mutation p.R148Q 0.30 tolerated(0.72) benign(0) TCGA-CK-5916-01 9 104432773 104432773 C - GRIN3A Frame_Shift_Del p.V641* 0.08 TCGA-CK-5916-01 9 107550757 107550757 C T ABCA1 Missense_Mutation p.V2007M 0.27 deleterious(0) benign(0.199) TCGA-CK-5916-01 9 109694678 109694678 G - ZNF462 Intron 0.27 TCGA-CK-5916-01 9 113496614 113496614 A T MUSK Missense_Mutation p.I238F 0.34 tolerated(0.14) benign(0.039) TCGA-CK-5916-01 9 113637995 113637995 A - LPAR1 Frame_Shift_Del p.F267Lfs*14 0.21 TCGA-CK-5916-01 9 114128888 114128888 C T KIAA0368 Silent p.L1889L 0.35 TCGA-CK-5916-01 9 116346238 116346238 C - RGS3 Frame_Shift_Del p.R851Gfs*5 0.47 TCGA-CK-5916-01 9 116971982 116971982 G A COL27A1 Missense_Mutation p.G766S 0.24 unknown(0) TCGA-CK-5916-01 9 117033034 117033034 T A COL27A1 Missense_Mutation p.S1194R 0.25 probably_damaging(0.972) TCGA-CK-5916-01 9 117138950 117138950 G - AKNA Frame_Shift_Del p.K380Sfs*30 0.26 TCGA-CK-5916-01 9 119461791 119461791 C T TRIM32 Silent p.I590I 0.33 TCGA-CK-5916-01 9 124536604 124536604 G A DAB2IP Silent p.A983A 0.27 TCGA-CK-5916-01 9 125281747 125281747 C A OR1J4 Missense_Mutation p.L110I 0.27 tolerated_low_confidence(0.24) benign(0.02) TCGA-CK-5916-01 9 126392722 126392722 G A DENND1A Missense_Mutation p.L218F 0.49 deleterious(0) probably_damaging(0.978) TCGA-CK-5916-01 9 126777472 126777472 G A LHX2 Missense_Mutation p.R132Q 0.30 deleterious(0) probably_damaging(0.994) TCGA-CK-5916-01 9 127074820 127074820 G A NEK6 Silent p.S75S 0.42 TCGA-CK-5916-01 9 127951942 127951942 A C PPP6C Missense_Mutation p.L19R 0.35 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 9 129642046 129642046 C T ZBTB34 Missense_Mutation p.T119M 0.36 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 9 129647009 129647009 C T ZBTB34 3'UTR 0.32 TCGA-CK-5916-01 9 130940989 130940989 T C CIZ1 Silent p.G499G 0.23 TCGA-CK-5916-01 9 131298738 131298738 G A GLE1 Missense_Mutation p.R584Q 0.31 tolerated(0.21) benign(0.119) TCGA-CK-5916-01 9 131397114 131397114 G A WDR34 Silent p.G356G 0.37 TCGA-CK-5916-01 9 131475555 131475555 A G PKN3 Splice_Site p.X328_splice 0.32 TCGA-CK-5916-01 9 132591460 132591460 C - C9orf78 Intron 0.34 TCGA-CK-5916-01 9 133760368 133760368 T C ABL1 Silent p.P916P 0.29 TCGA-CK-5916-01 9 133760855 133760855 G A ABL1 Missense_Mutation p.G1079S 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-5916-01 9 135458458 135458458 G A BARHL1 Missense_Mutation p.V92I 0.44 tolerated(0.18) benign(0.059) TCGA-CK-5916-01 9 135942520 135942520 G A CEL Missense_Mutation p.A278T 0.24 deleterious(0) probably_damaging(0.976) TCGA-CK-5916-01 9 136677252 136677252 T G VAV2 Missense_Mutation p.E179A 0.27 deleterious(0.01) benign(0.021) TCGA-CK-5916-01 9 138395800 138395800 G A MRPS2 Missense_Mutation p.G238S 0.31 deleterious(0.03) probably_damaging(0.942) TCGA-CK-5916-01 9 138719314 138719315 - G CAMSAP1 Frame_Shift_Ins p.V388Rfs*19 0.17 TCGA-CK-5916-01 9 139395085 139395085 G A NOTCH1 Silent p.S1951S 0.29 TCGA-CK-5916-01 9 139637324 139637324 A G LCN10 Missense_Mutation p.V11A 0.36 tolerated(0.18) benign(0.294) TCGA-CK-5916-01 9 139835610 139835610 G T FBXW5 Silent p.R491R 0.24 TCGA-CK-5916-01 9 139925136 139925136 C T FUT7 3'UTR 0.44 TCGA-CK-5916-01 9 140075365 140075365 C A ANAPC2 Missense_Mutation p.K495N 0.29 tolerated(0.08) benign(0.128) TCGA-CK-5916-01 9 140138095 140138095 A G FAM166A 3'UTR 0.28 TCGA-CK-5916-01 9 140352258 140352258 C T NSMF Missense_Mutation p.G77S 0.38 tolerated_low_confidence(0.11) possibly_damaging(0.55) TCGA-CK-5916-01 9 140409910 140409910 G A PNPLA7 Silent p.P382P 0.19 TCGA-CK-5916-01 9 140732961 140732961 C - EHMT1 3'Flank 0.30 TCGA-CK-5916-01 9 141014729 141014729 C T CACNA1B Missense_Mutation p.S2048L 0.29 tolerated(0.52) benign(0.001) TCGA-CK-5916-01 9 15422845 15422845 G A SNAPC3 5'UTR 0.32 TCGA-CK-5916-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.30 TCGA-CK-5916-01 9 17502585 17502586 - A CNTLN Frame_Shift_Ins p.I1388Nfs*3 0.23 TCGA-CK-5916-01 9 19056359 19056359 C T HAUS6 Silent p.P950P 0.33 TCGA-CK-5916-01 9 19063047 19063047 T - HAUS6 Frame_Shift_Del p.S530Vfs*12 0.24 TCGA-CK-5916-01 9 21077890 21077890 G A IFNB1 5'UTR 0.23 TCGA-CK-5916-01 9 26928309 26928309 C T PLAA Silent p.L147L 0.26 TCGA-CK-5916-01 9 27209135 27209135 T C TEK Silent p.D864D 0.30 TCGA-CK-5916-01 9 32543902 32543902 C T TOPORS Silent p.P207P 0.38 TCGA-CK-5916-01 9 32974546 32974548 GAA - APTX In_Frame_Del p.L261del 0.25 TCGA-CK-5916-01 9 34271846 34271846 T C KIF24 Missense_Mutation p.Q433R 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 9 34372914 34372914 G A KIAA1161 5'UTR 0.29 TCGA-CK-5916-01 9 34513144 34513144 T C DNAI1 Silent p.I508I 0.26 TCGA-CK-5916-01 9 36589579 36589579 T C MELK Missense_Mutation p.L64P 0.21 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 9 37126677 37126677 C A ZCCHC7 Silent p.A116A 0.35 TCGA-CK-5916-01 9 37442162 37442162 G - ZBTB5 Frame_Shift_Del p.S130Vfs*22 0.27 TCGA-CK-5916-01 9 37746262 37746262 G A FRMPD1 Silent p.L1411L 0.33 TCGA-CK-5916-01 9 37746575 37746575 C T FRMPD1 Missense_Mutation p.R1516W 0.17 deleterious(0) probably_damaging(0.983) TCGA-CK-5916-01 9 5968606 5968606 T - KIAA2026 Frame_Shift_Del p.N542Ifs*11 0.24 TCGA-CK-5916-01 9 6328619 6328619 C A TPD52L3 Silent p.T8T 0.26 TCGA-CK-5916-01 9 71863051 71863051 G A TJP2 Missense_Mutation p.A962T 0.21 tolerated(0.07) benign(0.323) TCGA-CK-5916-01 9 72333253 72333254 CT - PTAR1 3'UTR 0.28 TCGA-CK-5916-01 9 740854 740854 G A KANK1 Missense_Mutation p.A1206T 0.26 deleterious(0) probably_damaging(0.909) TCGA-CK-5916-01 9 74586534 74586534 C T C9orf85 Missense_Mutation p.P108L 0.37 tolerated(0.07) benign(0.174) TCGA-CK-5916-01 9 75520915 75520915 G A ALDH1A1 Silent p.C464C 0.34 TCGA-CK-5916-01 9 75783987 75783987 G A ANXA1 Missense_Mutation p.V301I 0.34 deleterious(0.02) probably_damaging(0.957) TCGA-CK-5916-01 9 77257623 77257623 C T RORB Nonsense_Mutation p.Q177* 0.27 TCGA-CK-5916-01 9 8485810 8485810 C T PTPRD Missense_Mutation p.G1003R 0.33 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 9 8486143 8486143 C T PTPRD Missense_Mutation p.V892I 0.28 tolerated(0.77) benign(0.002) TCGA-CK-5916-01 9 88903456 88903456 A - ZCCHC6 3'UTR 0.34 TCGA-CK-5916-01 9 91609148 91609148 C - C9orf47 3'UTR 0.30 TCGA-CK-5916-01 9 94484964 94484964 C T ROR2 3'UTR 0.39 TCGA-CK-5916-01 9 94486142 94486142 G - ROR2 Frame_Shift_Del p.S879Pfs*111 0.34 TCGA-CK-5916-01 9 94487253 94487253 G A ROR2 Missense_Mutation p.T508M 0.35 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 9 94809514 94809514 A G SPTLC1 Silent p.L341L 0.11 TCGA-CK-5916-01 9 95277053 95277053 G A ECM2 Missense_Mutation p.P305L 0.30 tolerated(0.06) benign(0.028) TCGA-CK-5916-01 9 96009928 96009928 C T WNK2 Missense_Mutation p.A549V 0.40 unknown(0) TCGA-CK-5916-01 9 97563232 97563232 C T C9orf3 Missense_Mutation p.R438W 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-5916-01 9 98231254 98231254 T C PTCH1 Missense_Mutation p.T677A 0.30 deleterious(0.04) benign(0.021) TCGA-CK-5916-01 X 100106244 100106244 T C NOX1 Missense_Mutation p.Q292R 0.26 tolerated(0.41) benign(0.004) TCGA-CK-5916-01 X 100542641 100542641 C T TAF7L Intron 0.28 TCGA-CK-5916-01 X 100611843 100611843 G A BTK Silent p.D426D 0.31 TCGA-CK-5916-01 X 10062253 10062253 G A WWC3 Missense_Mutation p.V197M 0.21 tolerated(0.16) benign(0.27) TCGA-CK-5916-01 X 100881496 100881496 C A ARMCX3 3'UTR 0.34 TCGA-CK-5916-01 X 101381352 101381352 C T TCEAL2 5'UTR 0.08 TCGA-CK-5916-01 X 102840906 102840906 G A TCEAL4 5'UTR 0.18 TCGA-CK-5916-01 X 103495292 103495292 A G ESX1 Missense_Mutation p.S280P 0.22 tolerated(0.19) unknown(0) TCGA-CK-5916-01 X 103495293 103495293 G C ESX1 Silent p.G279G 0.23 TCGA-CK-5916-01 X 106172828 106172828 C A CLDN2 3'UTR 0.23 TCGA-CK-5916-01 X 106844203 106844203 C - FRMPD3 Frame_Shift_Del p.S1014Afs*18 0.36 TCGA-CK-5916-01 X 107148750 107148750 C T MID2 Missense_Mutation p.R323C 0.29 deleterious(0) probably_damaging(0.912) TCGA-CK-5916-01 X 107978746 107978746 C T IRS4 Missense_Mutation p.V277I 0.39 tolerated(0.14) possibly_damaging(0.879) TCGA-CK-5916-01 X 108868168 108868168 C T KCNE1L Missense_Mutation p.G28S 0.29 tolerated(0.22) benign(0.033) TCGA-CK-5916-01 X 110489878 110489878 C G CAPN6 Missense_Mutation p.G618A 0.33 tolerated(0.08) probably_damaging(0.91) TCGA-CK-5916-01 X 111195335 111195335 C T TRPC5 Missense_Mutation p.R105H 0.29 tolerated(0.06) probably_damaging(0.996) TCGA-CK-5916-01 X 11318840 11318840 A - AMELX 3'UTR 0.27 TCGA-CK-5916-01 X 114238557 114238557 A T IL13RA2 3'UTR 0.29 TCGA-CK-5916-01 X 118750698 118750698 A - SEPT6 3'Flank 0.19 TCGA-CK-5916-01 X 119005074 119005074 G A RNF113A Missense_Mutation p.T168M 0.21 deleterious(0) possibly_damaging(0.619) TCGA-CK-5916-01 X 119387854 119387857 TCAT ATGTCA ZBTB33 Frame_Shift_Ins p.V195Dfs*47 0.40 TCGA-CK-5916-01 X 119565292 119565292 G A LAMP2 Intron 0.31 TCGA-CK-5916-01 X 120181765 120181765 G A GLUD2 Missense_Mutation p.R76H 0.34 tolerated(0.05) benign(0.015) TCGA-CK-5916-01 X 123519560 123519560 C T TENM1 Missense_Mutation p.G2015R 0.29 deleterious(0) probably_damaging(0.95) TCGA-CK-5916-01 X 125299162 125299162 T C DCAF12L2 Missense_Mutation p.D249G 0.32 tolerated(0.26) benign(0.271) TCGA-CK-5916-01 X 12906305 12906305 C A TLR7 Missense_Mutation p.A893D 0.33 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.43 TCGA-CK-5916-01 X 129203441 129203441 G - ELF4 Frame_Shift_Del p.Q341Rfs*30 0.31 TCGA-CK-5916-01 X 130409260 130409260 C T IGSF1 Missense_Mutation p.G1067D 0.24 tolerated(0.1) probably_damaging(1) TCGA-CK-5916-01 X 130419000 130419000 T C IGSF1 Intron 0.33 TCGA-CK-5916-01 X 132161742 132161742 G A USP26 Silent p.C169C 0.31 TCGA-CK-5916-01 X 132826409 132826409 T C GPC3 Missense_Mutation p.E450G 0.31 deleterious(0.04) benign(0.102) TCGA-CK-5916-01 X 134494503 134494503 C T ZNF449 Silent p.C353C 0.24 TCGA-CK-5916-01 X 135579929 135579929 A G HTATSF1 Missense_Mutation p.D29G 0.28 tolerated(0.05) benign(0.008) TCGA-CK-5916-01 X 136651176 136651176 G A ZIC3 Silent p.V392V 0.31 TCGA-CK-5916-01 X 139587133 139587133 C T SOX3 Silent p.P31P 0.32 TCGA-CK-5916-01 X 14027285 14027285 C T GEMIN8 Missense_Mutation p.R159Q 0.32 tolerated(0.06) benign(0.286) TCGA-CK-5916-01 X 144905863 144905863 C T SLITRK2 Silent p.F640F 0.25 TCGA-CK-5916-01 X 148037464 148037464 A G AFF2 Missense_Mutation p.Q630R 0.30 deleterious(0.03) benign(0.185) TCGA-CK-5916-01 X 148585007 148585007 C T IDS Missense_Mutation p.A85T 0.20 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 X 14861650 14861651 - A FANCB 3'UTR 0.21 TCGA-CK-5916-01 X 151123498 151123498 C T GABRE Missense_Mutation p.R399H 0.33 tolerated(0.58) benign(0.018) TCGA-CK-5916-01 X 151935490 151935490 C A MAGEA3 Missense_Mutation p.S226I 0.26 deleterious(0) probably_damaging(0.912) TCGA-CK-5916-01 X 152482749 152482749 G C MAGEA1 Missense_Mutation p.P88A 0.34 tolerated(0.08) benign(0.163) TCGA-CK-5916-01 X 153036228 153036228 C T PLXNB3 Missense_Mutation p.R699C 0.27 deleterious(0.03) possibly_damaging(0.828) TCGA-CK-5916-01 X 153039500 153039500 G A PLXNB3 Missense_Mutation p.E1179K 0.32 deleterious(0.02) benign(0.031) TCGA-CK-5916-01 X 153221775 153221775 G A HCFC1 Missense_Mutation p.T908M 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CK-5916-01 X 153225330 153225330 G - HCFC1 Frame_Shift_Del p.P456Rfs*34 0.33 TCGA-CK-5916-01 X 15342836 15342836 A G PIGA Missense_Mutation p.I380T 0.31 tolerated(0.18) benign(0.001) TCGA-CK-5916-01 X 153592730 153592730 C T FLNA Missense_Mutation p.R678H 0.32 tolerated(0.05) benign(0.008) TCGA-CK-5916-01 X 153688573 153688573 C - PLXNA3 Frame_Shift_Del p.L18Wfs*11 0.10 TCGA-CK-5916-01 X 15402246 15402246 T - FIGF 5'UTR 0.33 TCGA-CK-5916-01 X 154134730 154134730 G A F8 Missense_Mutation p.P1780S 0.30 deleterious(0) probably_damaging(1) TCGA-CK-5916-01 X 16887283 16887285 TTC - RBBP7 In_Frame_Del p.K69del 0.34 TCGA-CK-5916-01 X 21627459 21627459 C T CNKSR2 Missense_Mutation p.R806W 0.27 deleterious(0) probably_damaging(0.976) TCGA-CK-5916-01 X 21676222 21676222 G A KLHL34 5'UTR 0.32 TCGA-CK-5916-01 X 22117214 22117214 C T PHEX Missense_Mutation p.R342C 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-CK-5916-01 X 23353237 23353237 G A PTCHD1 Missense_Mutation p.R82H 0.30 tolerated(0.22) possibly_damaging(0.703) TCGA-CK-5916-01 X 2408700 2408700 C T ZBED1 Missense_Mutation p.A21T 0.28 tolerated(0.08) probably_damaging(0.998) TCGA-CK-5916-01 X 2774640 2774640 T C GYG2 Missense_Mutation p.Y228H 0.16 deleterious(0) probably_damaging(0.957) TCGA-CK-5916-01 X 29686614 29686614 C A IL1RAPL1 Silent p.T257T 0.31 TCGA-CK-5916-01 X 30327327 30327327 C A NR0B1 Nonsense_Mutation p.E52* 0.23 TCGA-CK-5916-01 X 31187660 31187660 G - DMD Frame_Shift_Del p.L3485* 0.23 TCGA-CK-5916-01 X 322250 322250 G A PPP2R3B Missense_Mutation p.R134C 0.30 tolerated(0.12) benign(0.015) TCGA-CK-5916-01 X 3227765 3227765 C T MXRA5 Missense_Mutation p.V2827I 0.29 tolerated(0.52) benign(0.091) TCGA-CK-5916-01 X 3227848 3227848 T C MXRA5 Missense_Mutation p.H2799R 0.32 tolerated(0.19) benign(0.063) TCGA-CK-5916-01 X 34961467 34961467 C T FAM47B Silent p.T173T 0.33 TCGA-CK-5916-01 X 37665685 37665685 T C CYBB Missense_Mutation p.F454L 0.24 deleterious(0.05) possibly_damaging(0.818) TCGA-CK-5916-01 X 38178178 38178178 C T RPGR Missense_Mutation p.E125K 0.32 benign(0.266) TCGA-CK-5916-01 X 40586074 40586074 C T MED14 Missense_Mutation p.R91Q 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-CK-5916-01 X 41587497 41587497 A - GPR82 3'UTR 0.21 TCGA-CK-5916-01 X 47422384 47422384 C - ARAF Frame_Shift_Del p.P8Lfs*26 0.19 TCGA-CK-5916-01 X 47919330 47919330 G A ZNF630 Silent p.D167D 0.37 TCGA-CK-5916-01 X 48418406 48418406 C T TBC1D25 Silent p.G370G 0.21 TCGA-CK-5916-01 X 48419217 48419217 A G TBC1D25 Missense_Mutation p.N641D 0.25 tolerated(0.08) probably_damaging(0.956) TCGA-CK-5916-01 X 48673200 48673200 T C HDAC6 Intron 0.37 TCGA-CK-5916-01 X 48834656 48834656 G - GRIPAP1 Intron 0.23 TCGA-CK-5916-01 X 48932811 48932811 G A WDR45 Silent p.N320N 0.29 TCGA-CK-5916-01 X 50133354 50133354 T C DGKK RNA 0.32 TCGA-CK-5916-01 X 51075705 51075705 G A NUDT10 Intron 0.47 TCGA-CK-5916-01 X 53223831 53223831 T C KDM5C Silent p.A1176A 0.26 TCGA-CK-5916-01 X 54071356 54071356 C T PHF8 5'UTR 0.34 TCGA-CK-5916-01 X 54492009 54492009 C T FGD1 Missense_Mutation p.C504Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-CK-5916-01 X 55041185 55041185 T C ALAS2 Missense_Mutation p.I478V 0.28 tolerated(0.81) benign(0.268) TCGA-CK-5916-01 X 56592162 56592162 T C UBQLN2 Missense_Mutation p.L619P 0.29 deleterious(0) unknown(0) TCGA-CK-5916-01 X 57620097 57620097 T C ZXDB Missense_Mutation p.L539P 0.25 deleterious(0.03) possibly_damaging(0.885) TCGA-CK-5916-01 X 65423343 65423343 G A HEPH Missense_Mutation p.A793T 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-CK-5916-01 X 70327702 70327702 C T IL2RG Missense_Mutation p.V332I 0.27 deleterious(0.03) possibly_damaging(0.465) TCGA-CK-5916-01 X 71349773 71349773 G A RGAG4 Nonsense_Mutation p.Q540* 0.09 TCGA-CK-5916-01 X 73963269 73963269 C - KIAA2022 Frame_Shift_Del p.E375Rfs*21 0.26 TCGA-CK-5916-01 X 86921618 86921618 T - KLHL4 Intron 0.28 TCGA-CK-5916-01 X 90692039 90692039 T C PABPC5 3'UTR 0.29 TCGA-CK-5916-01 X 96197082 96197082 A T DIAPH2 Missense_Mutation p.D464V 0.27 deleterious(0) unknown(0) TCGA-CK-5916-01 X 9900521 9900521 G A SHROOM2 Silent p.P1066P 0.20 TCGA-CK-5916-01 X 9900750 9900750 G A SHROOM2 Missense_Mutation p.A1143T 0.33 tolerated(1) benign(0) TCGA-CK-5916-01 X 99662665 99662665 C T PCDH19 Missense_Mutation p.V311M 0.07 tolerated(0.24) benign(0.15) TCGA-CK-5916-01 X 99840353 99840354 - A TNMD Frame_Shift_Ins p.A61Sfs*3 0.19 TCGA-CK-5916-01 X 99924269 99924269 C T SRPX2 Missense_Mutation p.R374W 0.30 deleterious(0) possibly_damaging(0.873) TCGA-CK-6746-01 10 101448495 101448495 G A ENTPD7 Missense_Mutation p.D233N 0.39 tolerated(0.12) benign(0.012) TCGA-CK-6746-01 10 103826900 103826900 C - HPS6 Frame_Shift_Del p.N559Mfs*54 0.31 TCGA-CK-6746-01 10 105037865 105037865 G A INA Silent p.A299A 0.48 TCGA-CK-6746-01 10 1068692 1068692 C T IDI2 Missense_Mutation p.V56I 0.54 deleterious(0.03) benign(0.066) TCGA-CK-6746-01 10 108336957 108336957 T - SORCS1 3'Flank 0.26 TCGA-CK-6746-01 10 116735020 116735020 T C TRUB1 Missense_Mutation p.F311S 0.39 deleterious(0.02) benign(0.031) TCGA-CK-6746-01 10 119042973 119042973 T C PDZD8 Missense_Mutation p.M1091V 0.36 deleterious(0.03) benign(0.002) TCGA-CK-6746-01 10 11990443 11990443 T A UPF2 Missense_Mutation p.E1033D 0.43 tolerated(0.62) benign(0.001) TCGA-CK-6746-01 10 121337194 121337194 T - TIAL1 Frame_Shift_Del p.N221Ifs*13 0.25 TCGA-CK-6746-01 10 121356024 121356028 GGGGA - TIAL1 5'Flank 0.52 TCGA-CK-6746-01 10 121551680 121551681 - T INPP5F Frame_Shift_Ins p.W211Lfs*3 0.09 TCGA-CK-6746-01 10 123954633 123954634 - C TACC2 Frame_Shift_Ins p.E1974Rfs*22 0.30 TCGA-CK-6746-01 10 124008670 124008670 A G TACC2 Missense_Mutation p.R2887G 0.08 probably_damaging(0.997) TCGA-CK-6746-01 10 124457442 124457442 G A C10orf120 Missense_Mutation p.P272L 0.37 tolerated(0.75) benign(0.001) TCGA-CK-6746-01 10 125650961 125650961 C T CPXM2 Missense_Mutation p.R72H 0.52 tolerated_low_confidence(0.28) benign(0) TCGA-CK-6746-01 10 125651065 125651065 C T CPXM2 Silent p.G37G 0.10 TCGA-CK-6746-01 10 125769811 125769811 C T CHST15 Missense_Mutation p.A514T 0.51 tolerated(0.16) possibly_damaging(0.49) TCGA-CK-6746-01 10 126092398 126092398 A G OAT Missense_Mutation p.M247T 0.39 tolerated(0.36) benign(0) TCGA-CK-6746-01 10 126517963 126517963 A G FAM175B Missense_Mutation p.T194A 0.38 tolerated(0.79) benign(0.007) TCGA-CK-6746-01 10 128192614 128192614 T C C10orf90 Silent p.K385K 0.44 TCGA-CK-6746-01 10 129866475 129866475 T C PTPRE Missense_Mutation p.I311T 0.47 tolerated(0.82) probably_damaging(0.942) TCGA-CK-6746-01 10 131636171 131636171 G T EBF3 3'UTR 0.37 TCGA-CK-6746-01 10 133958653 133958653 C T JAKMIP3 Missense_Mutation p.R549W 0.42 deleterious(0) possibly_damaging(0.828) TCGA-CK-6746-01 10 134503931 134503931 A - INPP5A Frame_Shift_Del p.N116Tfs*25 0.33 TCGA-CK-6746-01 10 134735719 134735720 - T TTC40 Frame_Shift_Ins p.A499Sfs*24 0.44 TCGA-CK-6746-01 10 135197679 135197679 C T PAOX Missense_Mutation p.R362W 0.34 deleterious(0) possibly_damaging(0.84) TCGA-CK-6746-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.42 TCGA-CK-6746-01 10 17194010 17194011 - A TRDMT1 Intron 0.12 TCGA-CK-6746-01 10 17495614 17495614 G - ST8SIA6 Frame_Shift_Del p.A49Qfs*3 0.38 TCGA-CK-6746-01 10 18827226 18827226 C A CACNB2 Missense_Mutation p.P474T 0.50 deleterious(0) benign(0.005) TCGA-CK-6746-01 10 18828599 18828599 A - CACNB2 Frame_Shift_Del p.K645Nfs*29 0.29 TCGA-CK-6746-01 10 23319528 23319528 A C ARMC3 Missense_Mutation p.K683N 0.43 deleterious(0.02) possibly_damaging(0.721) TCGA-CK-6746-01 10 25226256 25226256 A G PRTFDC1 Missense_Mutation p.Y66H 0.50 tolerated(0.51) benign(0.002) TCGA-CK-6746-01 10 28030417 28030417 C T MKX Missense_Mutation p.G69R 0.41 tolerated(0.09) probably_damaging(0.99) TCGA-CK-6746-01 10 29580841 29580841 A C LYZL1 Silent p.T61T 0.40 TCGA-CK-6746-01 10 32760003 32760003 T C CCDC7 Silent p.D174D 0.14 TCGA-CK-6746-01 10 35351982 35351982 T C CUL2 Missense_Mutation p.Y62C 0.22 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 10 38120167 38120167 C G ZNF248 3'UTR 0.32 TCGA-CK-6746-01 10 38121658 38121658 T G ZNF248 Missense_Mutation p.S209R 0.63 tolerated(0.44) benign(0.035) TCGA-CK-6746-01 10 43971260 43971260 T C ZNF487 Translation_Start_Site p.M1? 0.30 deleterious(0) benign(0.088) TCGA-CK-6746-01 10 46967615 46967615 C T SYT15 Silent p.S154S 0.12 TCGA-CK-6746-01 10 48373865 48373865 A G ZNF488 3'UTR 0.40 TCGA-CK-6746-01 10 50315774 50315774 C - VSTM4 Frame_Shift_Del p.A108Rfs*8 0.32 TCGA-CK-6746-01 10 50315920 50315920 G A VSTM4 Missense_Mutation p.A59V 0.50 tolerated(1) benign(0.3) TCGA-CK-6746-01 10 55566256 55566256 C T PCDH15 3'UTR 0.60 TCGA-CK-6746-01 10 62552043 62552043 T C CDK1 Missense_Mutation p.L264P 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-CK-6746-01 10 64000901 64000901 G A RTKN2 Nonsense_Mutation p.R124* 0.39 TCGA-CK-6746-01 10 64573012 64573012 G A EGR2 Silent p.G462G 0.35 TCGA-CK-6746-01 10 6472867 6472867 C T PRKCQ Missense_Mutation p.V624M 0.33 tolerated(0.33) benign(0.026) TCGA-CK-6746-01 10 64913770 64913770 C T NRBF2 Missense_Mutation p.A219V 0.43 deleterious(0.04) possibly_damaging(0.755) TCGA-CK-6746-01 10 69669078 69669079 - T SIRT1 Frame_Shift_Ins p.G415Wfs*2 0.30 TCGA-CK-6746-01 10 70182535 70182535 C G DNA2 Missense_Mutation p.G860A 0.37 tolerated(0.08) possibly_damaging(0.646) TCGA-CK-6746-01 10 70696705 70696705 G A DDX50 Missense_Mutation p.V537I 0.24 tolerated(0.08) possibly_damaging(0.682) TCGA-CK-6746-01 10 72503882 72503882 G - ADAMTS14 Frame_Shift_Del p.G711Vfs*9 0.29 TCGA-CK-6746-01 10 73510971 73510971 C A C10orf54 3'UTR 0.46 TCGA-CK-6746-01 10 73559289 73559289 T G CDH23 Missense_Mutation p.L182R 0.14 tolerated(0.07) probably_damaging(0.986) TCGA-CK-6746-01 10 75184858 75184858 G A MSS51 Silent p.Y387Y 0.44 TCGA-CK-6746-01 10 76990826 76990826 T - VDAC2 3'UTR 0.21 TCGA-CK-6746-01 10 8100728 8100728 C - GATA3 Frame_Shift_Del p.S237Afs*29 0.42 TCGA-CK-6746-01 10 82298068 82298068 C T SH2D4B 5'UTR 0.41 TCGA-CK-6746-01 10 87379772 87379772 C T GRID1 Missense_Mutation p.A738T 0.50 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 10 87966405 87966405 G T GRID1 Missense_Mutation p.A79D 0.29 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 10 88197221 88197221 G T WAPAL 3'UTR 0.38 TCGA-CK-6746-01 10 89474792 89474792 G A PAPSS2 Silent p.P230P 0.34 TCGA-CK-6746-01 10 89622102 89622102 C A KLLN Missense_Mutation p.R48M 0.40 deleterious(0) possibly_damaging(0.629) TCGA-CK-6746-01 10 91518566 91518566 T C KIF20B Missense_Mutation p.L1496P 0.45 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 10 93579297 93579297 G A TNKS2 Missense_Mutation p.A206T 0.44 deleterious(0.04) possibly_damaging(0.706) TCGA-CK-6746-01 10 93778653 93778653 T C BTAF1 Silent p.H1608H 0.45 TCGA-CK-6746-01 10 96447997 96447997 C T CYP2C18 Silent p.A149A 0.39 TCGA-CK-6746-01 10 96988670 96988670 A G C10orf129 3'UTR 0.57 TCGA-CK-6746-01 10 97918030 97918030 C T ZNF518A RNA 0.42 TCGA-CK-6746-01 10 98799851 98799851 G A SLIT1 Missense_Mutation p.R731C 0.43 tolerated(0.05) possibly_damaging(0.487) TCGA-CK-6746-01 10 99130487 99130487 C T RRP12 Missense_Mutation p.A857T 0.48 tolerated(0.13) benign(0.02) TCGA-CK-6746-01 10 99350643 99350643 A C C10orf62 3'UTR 0.33 TCGA-CK-6746-01 10 99991390 99991390 A G R3HCC1L Missense_Mutation p.D636G 0.31 deleterious(0.03) probably_damaging(0.918) TCGA-CK-6746-01 11 104901070 104901070 T - CASP1 Frame_Shift_Del p.N205Ifs*7 0.37 TCGA-CK-6746-01 11 105481696 105481696 A C GRIA4 5'UTR 0.38 TCGA-CK-6746-01 11 108064728 108064728 T - NPAT Frame_Shift_Del p.N58Tfs*2 0.30 TCGA-CK-6746-01 11 108123616 108123616 T - ATM Frame_Shift_Del p.F627Sfs*22 0.30 TCGA-CK-6746-01 11 10825740 10825740 C T EIF4G2 Missense_Mutation p.R165H 0.42 tolerated(0.1) possibly_damaging(0.746) TCGA-CK-6746-01 11 1094687 1094687 G A MUC2 Silent p.T1925T 0.43 TCGA-CK-6746-01 11 111835323 111835323 G A DIXDC1 Silent p.R37R 0.49 TCGA-CK-6746-01 11 111959621 111959621 C T SDHD Missense_Mutation p.T67I 0.59 deleterious(0.01) probably_damaging(0.949) TCGA-CK-6746-01 11 113075136 113075136 G A NCAM1 Missense_Mutation p.A145T 0.24 deleterious(0.01) possibly_damaging(0.78) TCGA-CK-6746-01 11 113684549 113684549 T - USP28 Intron 0.26 TCGA-CK-6746-01 11 114320631 114320632 - A REXO2 Frame_Shift_Ins p.I219Nfs*3 0.35 TCGA-CK-6746-01 11 114453222 114453222 G A NXPE4 Silent p.G206G 0.46 TCGA-CK-6746-01 11 117232585 117232585 C T CEP164 Missense_Mutation p.P143L 0.42 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 11 117984019 117984019 C T TMPRSS4 Missense_Mutation p.A260V 0.45 tolerated(0.42) benign(0.042) TCGA-CK-6746-01 11 118261412 118261412 C T UBE4A Missense_Mutation p.R944C 0.35 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 11 118499265 118499265 A - PHLDB1 Frame_Shift_Del p.N577Ifs*42 0.41 TCGA-CK-6746-01 11 119234591 119234591 T C USP2 Intron 0.11 TCGA-CK-6746-01 11 120175816 120175816 G T POU2F3 Missense_Mutation p.K176N 0.42 deleterious(0.04) benign(0.034) TCGA-CK-6746-01 11 120929067 120929067 G A TBCEL Nonsense_Mutation p.W242* 0.37 TCGA-CK-6746-01 11 121028848 121028848 C T TECTA Missense_Mutation p.S1535L 0.50 deleterious(0.03) benign(0.318) TCGA-CK-6746-01 11 121466431 121466431 G A SORL1 Missense_Mutation p.R1490H 0.38 tolerated(0.18) benign(0.079) TCGA-CK-6746-01 11 122666982 122666982 A G UBASH3B Missense_Mutation p.K411R 0.48 tolerated(0.09) benign(0.095) TCGA-CK-6746-01 11 123600376 123600376 G A ZNF202 Missense_Mutation p.P187L 0.24 tolerated(0.05) benign(0.001) TCGA-CK-6746-01 11 123900428 123900428 C T OR10G8 Silent p.Y33Y 0.43 TCGA-CK-6746-01 11 124007801 124007801 A - VWA5A Frame_Shift_Del p.D571Mfs*3 0.35 TCGA-CK-6746-01 11 124266353 124266353 C T OR8B3 Missense_Mutation p.A299T 0.43 deleterious_low_confidence(0.02) benign(0.006) TCGA-CK-6746-01 11 125365362 125365362 G A AP000708.1 Silent p.A46A 0.55 TCGA-CK-6746-01 11 125366573 125366573 G A AP000708.1 Missense_Mutation p.A153T 0.49 tolerated_low_confidence(0.23) possibly_damaging(0.682) TCGA-CK-6746-01 11 125792845 125792846 - T DDX25 3'UTR 0.33 TCGA-CK-6746-01 11 126162788 126162788 C T TIRAP Silent p.L162L 0.33 TCGA-CK-6746-01 11 126163674 126163674 G T TIRAP 3'Flank 0.29 TCGA-CK-6746-01 11 126208218 126208218 A G DCPS Missense_Mutation p.D187G 0.34 deleterious(0) possibly_damaging(0.751) TCGA-CK-6746-01 11 134243678 134243678 A C GLB1L2 Missense_Mutation p.D524A 0.34 deleterious(0) benign(0.091) TCGA-CK-6746-01 11 16872756 16872756 G A PLEKHA7 Silent p.S226S 0.38 TCGA-CK-6746-01 11 18195194 18195194 C T MRGPRX4 Missense_Mutation p.R131C 0.38 deleterious(0.02) benign(0.431) TCGA-CK-6746-01 11 18231012 18231012 C - RP11-113D6.10 Intron 0.35 TCGA-CK-6746-01 11 19255993 19255993 G A E2F8 Missense_Mutation p.T281M 0.28 deleterious(0) probably_damaging(0.986) TCGA-CK-6746-01 11 20639298 20639298 G A SLC6A5 Silent p.K376K 0.42 TCGA-CK-6746-01 11 20668457 20668457 T C SLC6A5 Missense_Mutation p.F683L 0.40 tolerated(0.06) benign(0.02) TCGA-CK-6746-01 11 20691195 20691195 C T NELL1 5'UTR 0.54 TCGA-CK-6746-01 11 2154748 2154748 G A IGF2 Missense_Mutation p.P158L 0.47 deleterious(0) probably_damaging(0.918) TCGA-CK-6746-01 11 2436438 2436438 G A TRPM5 Silent p.H464H 0.38 TCGA-CK-6746-01 11 26587349 26587349 C T MUC15 Silent p.S46S 0.38 TCGA-CK-6746-01 11 2909422 2909423 AG - SLC22A18AS Frame_Shift_Del p.S250Cfs*28 0.21 TCGA-CK-6746-01 11 30033967 30033967 G A KCNA4 Nonsense_Mutation p.R87* 0.44 TCGA-CK-6746-01 11 30915912 30915912 A G DCDC1 Silent p.C1592C 0.38 TCGA-CK-6746-01 11 30942465 30942465 G T DCDC1 Missense_Mutation p.Q1051K 0.41 tolerated(0.18) benign(0.092) TCGA-CK-6746-01 11 31812316 31812317 - G PAX6 Frame_Shift_Ins p.H390Tfs*36 0.35 TCGA-CK-6746-01 11 32461095 32461096 - T WT1 5'Flank 0.41 TCGA-CK-6746-01 11 36250780 36250780 C - LDLRAD3 Frame_Shift_Del p.Y293Tfs*20 0.34 TCGA-CK-6746-01 11 36600615 36600615 T C RAG1 3'UTR 0.42 TCGA-CK-6746-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.31 TCGA-CK-6746-01 11 43923167 43923167 C T ALKBH3 Silent p.S187S 0.41 TCGA-CK-6746-01 11 44129712 44129712 C A EXT2 Silent p.A183A 0.44 TCGA-CK-6746-01 11 45950271 45950271 A G GYLTL1B Missense_Mutation p.T681A 0.49 tolerated(0.8) benign(0.008) TCGA-CK-6746-01 11 4623541 4623541 C A TRIM68 Missense_Mutation p.E208D 0.45 deleterious(0.04) benign(0.071) TCGA-CK-6746-01 11 46898354 46898354 A G LRP4 Missense_Mutation p.L1102P 0.64 tolerated(0.27) possibly_damaging(0.659) TCGA-CK-6746-01 11 46916203 46916203 G A LRP4 Missense_Mutation p.L493F 0.36 deleterious(0.03) benign(0.027) TCGA-CK-6746-01 11 47594388 47594388 A - KBTBD4 3'UTR 0.50 TCGA-CK-6746-01 11 47712214 47712214 G A AGBL2 Missense_Mutation p.R349C 0.47 deleterious(0.02) benign(0.029) TCGA-CK-6746-01 11 47754143 47754143 A G FNBP4 Missense_Mutation p.L589P 0.35 deleterious(0) probably_damaging(0.99) TCGA-CK-6746-01 11 4967810 4976423 11:4967810-4976423 - OR51A2 large deletion 0.23 TCGA-CK-6746-01 11 4976423 4976423 T - OR51A2 Frame_Shift_Del p.N174Tfs*14 0.39 TCGA-CK-6746-01 11 55340277 55340277 A C OR4C16 Missense_Mutation p.N225T 0.17 tolerated(0.21) probably_damaging(0.952) TCGA-CK-6746-01 11 55433000 55433000 C T OR4C6 Missense_Mutation p.R120C 0.26 deleterious_low_confidence(0.04) benign(0.066) TCGA-CK-6746-01 11 56468763 56468764 - A OR9G1 Frame_Shift_Ins p.L303Tfs*? 0.18 TCGA-CK-6746-01 11 57427285 57427285 C T CLP1 Nonsense_Mutation p.R113* 0.21 TCGA-CK-6746-01 11 5798956 5798956 T A OR52N5 Silent p.G303G 0.40 TCGA-CK-6746-01 11 59574126 59574126 G A MRPL16 Silent p.Y150Y 0.30 TCGA-CK-6746-01 11 6007320 6007320 G A OR52L1 Missense_Mutation p.R281C 0.45 deleterious(0.01) benign(0.141) TCGA-CK-6746-01 11 60565968 60565968 C T MS4A10 Nonsense_Mutation p.Q235* 0.41 TCGA-CK-6746-01 11 60665370 60665370 C T PRPF19 Silent p.T455T 0.41 TCGA-CK-6746-01 11 60704176 60704176 G - TMEM132A Frame_Shift_Del p.R960Gfs*5 0.28 TCGA-CK-6746-01 11 607427 607427 A G PHRF1 Silent p.P656P 0.37 TCGA-CK-6746-01 11 60975078 60975078 C T PGA3 Silent p.D149D 0.12 TCGA-CK-6746-01 11 61959589 61959589 A C SCGB1D1 Missense_Mutation p.K39N 0.37 tolerated(0.11) possibly_damaging(0.507) TCGA-CK-6746-01 11 62287962 62287962 C T AHNAK Missense_Mutation p.V4643I 0.45 benign(0.064) TCGA-CK-6746-01 11 62292200 62292200 C T AHNAK Missense_Mutation p.G3230D 0.46 probably_damaging(0.987) TCGA-CK-6746-01 11 62416983 62416983 A G INTS5 Missense_Mutation p.M190T 0.28 deleterious(0) probably_damaging(0.981) TCGA-CK-6746-01 11 63669677 63669677 G A MARK2 Missense_Mutation p.G370D 0.41 deleterious(0.04) benign(0.066) TCGA-CK-6746-01 11 64032517 64032517 C - PLCB3 Frame_Shift_Del p.R918Afs*95 0.33 TCGA-CK-6746-01 11 64329780 64329780 A G SLC22A11 Missense_Mutation p.T232A 0.09 tolerated(0.16) possibly_damaging(0.665) TCGA-CK-6746-01 11 64375122 64375122 G A NRXN2 Missense_Mutation p.A1562V 0.62 deleterious_low_confidence(0.01) benign(0.001) TCGA-CK-6746-01 11 64606560 64606560 G A CDC42BPG Missense_Mutation p.T274M 0.33 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 11 64813535 64813535 C T NAALADL1 Missense_Mutation p.G636D 0.43 tolerated(0.73) benign(0.001) TCGA-CK-6746-01 11 64884507 64884507 C G ZNHIT2 Missense_Mutation p.V207L 0.55 tolerated(0.16) benign(0.016) TCGA-CK-6746-01 11 65410029 65410029 G A SIPA1 Silent p.P301P 0.43 TCGA-CK-6746-01 11 65427201 65427201 C T RELA Silent p.V165V 0.33 TCGA-CK-6746-01 11 65620753 65620753 G A SNX32 Missense_Mutation p.A387T 0.55 tolerated(0.37) benign(0.239) TCGA-CK-6746-01 11 66113463 66113463 T C B3GNT1 3'UTR 0.33 TCGA-CK-6746-01 11 66130967 66130969 GAA - SLC29A2 In_Frame_Del p.F437del 0.33 TCGA-CK-6746-01 11 66136899 66136899 C T SLC29A2 Silent p.T72T 0.40 TCGA-CK-6746-01 11 66366958 66366958 G - CCS Frame_Shift_Del p.P96Lfs*13 0.52 TCGA-CK-6746-01 11 67069609 67069609 C T ANKRD13D Nonsense_Mutation p.Q542* 0.37 TCGA-CK-6746-01 11 67075926 67075926 A G SSH3 Missense_Mutation p.N353S 0.40 tolerated(0.3) probably_damaging(0.999) TCGA-CK-6746-01 11 67202073 67202073 G A RPS6KB2 Silent p.P392P 0.50 TCGA-CK-6746-01 11 67225948 67225948 G A CABP4 Missense_Mutation p.R253Q 0.47 tolerated(0.41) benign(0.02) TCGA-CK-6746-01 11 7334793 7334793 G T SYT9 Missense_Mutation p.G222V 0.38 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 11 7631561 7631561 G A PPFIBP2 Missense_Mutation p.D176N 0.44 tolerated(0.16) benign(0.009) TCGA-CK-6746-01 11 76922353 76922353 C T MYO7A Missense_Mutation p.R2070W 0.14 deleterious(0) possibly_damaging(0.901) TCGA-CK-6746-01 11 77835106 77835106 A G ALG8 Missense_Mutation p.V110A 0.39 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 11 78380212 78380212 T A TENM4 Missense_Mutation p.N2393I 0.43 deleterious(0) possibly_damaging(0.766) TCGA-CK-6746-01 11 800769 800769 C T PIDD Missense_Mutation p.R637Q 0.51 tolerated(0.31) benign(0.006) TCGA-CK-6746-01 11 82876777 82876777 C G PCF11 Missense_Mutation p.R280G 0.43 tolerated(0.06) benign(0.137) TCGA-CK-6746-01 11 86520855 86520855 T C PRSS23 3'UTR 0.20 TCGA-CK-6746-01 11 88583097 88583097 C T GRM5 Silent p.A296A 0.47 TCGA-CK-6746-01 11 88911904 88911904 C G TYR Missense_Mutation p.N261K 0.35 deleterious(0.05) benign(0.068) TCGA-CK-6746-01 11 94281107 94281107 A G FUT4 3'UTR 0.44 TCGA-CK-6746-01 11 9466730 9466730 G T IPO7 Missense_Mutation p.G1036W 0.32 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-CK-6746-01 11 95825976 95825976 C T MAML2 Missense_Mutation p.V407I 0.50 benign(0.201) TCGA-CK-6746-01 11 99945012 99945012 T C CNTN5 Silent p.V522V 0.44 TCGA-CK-6746-01 12 101017929 101017929 C A GAS2L3 Missense_Mutation p.A449D 0.39 deleterious(0.01) benign(0.145) TCGA-CK-6746-01 12 10131961 10131961 A - CLEC12A Frame_Shift_Del p.M85* 0.32 TCGA-CK-6746-01 12 10562015 10562015 C A KLRC4 Missense_Mutation p.G54W 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-CK-6746-01 12 108912292 108912292 C T FICD Silent p.F139F 0.35 TCGA-CK-6746-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.37 TCGA-CK-6746-01 12 110032884 110032884 G A MVK Missense_Mutation p.A313T 0.50 tolerated(0.3) benign(0.008) TCGA-CK-6746-01 12 110182028 110182028 G A FAM222A Missense_Mutation p.R26H 0.34 deleterious(0.02) possibly_damaging(0.467) TCGA-CK-6746-01 12 110618233 110618233 C T IFT81 Nonsense_Mutation p.R399* 0.41 TCGA-CK-6746-01 12 110778731 110778731 C T ATP2A2 Nonsense_Mutation p.R677* 0.50 TCGA-CK-6746-01 12 110989697 110989697 C T PPTC7 Silent p.T100T 0.38 TCGA-CK-6746-01 12 112915486 112915486 T C PTPN11 Silent p.G295G 0.51 TCGA-CK-6746-01 12 113733807 113733807 C T TPCN1 Nonsense_Mutation p.Q865* 0.43 TCGA-CK-6746-01 12 113835187 113835187 C T SDS Missense_Mutation p.A146T 0.49 tolerated(0.3) benign(0.006) TCGA-CK-6746-01 12 113907078 113907078 G A LHX5 Silent p.S82S 0.50 TCGA-CK-6746-01 12 11420331 11420331 T C PRB3 Missense_Mutation p.H242R 0.33 tolerated(0.91) unknown(0) TCGA-CK-6746-01 12 115121013 115121013 A G TBX3 5'UTR 0.39 TCGA-CK-6746-01 12 117013849 117013849 A G MAP1LC3B2 Missense_Mutation p.I34M 0.44 deleterious(0) probably_damaging(0.909) TCGA-CK-6746-01 12 117274039 117274039 C T RNFT2 Silent p.C384C 0.39 TCGA-CK-6746-01 12 117977605 117977605 G - KSR2 Frame_Shift_Del p.L536Sfs*61 0.43 TCGA-CK-6746-01 12 120156210 120156210 G T CIT Silent p.A1336A 0.42 TCGA-CK-6746-01 12 120591026 120591026 G - GCN1L1 Frame_Shift_Del p.S1352Pfs*8 0.33 TCGA-CK-6746-01 12 120894974 120894974 C - GATC Frame_Shift_Del p.P119Qfs*20 0.31 TCGA-CK-6746-01 12 121678565 121678565 G - CAMKK2 Frame_Shift_Del p.A569Pfs*72 0.39 TCGA-CK-6746-01 12 121890985 121890985 T C KDM2B Missense_Mutation p.M633V 0.38 deleterious(0) probably_damaging(0.916) TCGA-CK-6746-01 12 122218747 122218747 G A RHOF Intron 0.43 TCGA-CK-6746-01 12 122218848 122218848 T C RHOF Missense_Mutation p.D134G 0.41 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 12 122252348 122252348 C T SETD1B Missense_Mutation p.P743S 0.37 unknown(0) TCGA-CK-6746-01 12 122720397 122720397 C - VPS33A Frame_Shift_Del p.G459Afs*86 0.31 TCGA-CK-6746-01 12 123253698 123253698 A T DENR 3'UTR 0.43 TCGA-CK-6746-01 12 123345959 123345992 AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC - HIP1R Frame_Shift_Del p.E1021Vfs*2 0.34 TCGA-CK-6746-01 12 123474377 123474377 G A PITPNM2 Silent p.G896G 0.30 TCGA-CK-6746-01 12 123489800 123489800 C T PITPNM2 Silent p.S313S 0.24 TCGA-CK-6746-01 12 131360263 131360263 C T RAN Missense_Mutation p.A181V 0.37 tolerated(0.06) benign(0.015) TCGA-CK-6746-01 12 132380201 132380201 C A ULK1 Missense_Mutation p.S56Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-CK-6746-01 12 132400540 132400540 A - ULK1 Frame_Shift_Del p.K572Nfs*75 0.10 TCGA-CK-6746-01 12 132466913 132466913 C T EP400 Missense_Mutation p.P607S 0.50 unknown(0) TCGA-CK-6746-01 12 132681549 132681549 A C GALNT9 3'UTR 0.44 TCGA-CK-6746-01 12 14930320 14930320 C T H2AFJ 3'UTR 0.46 TCGA-CK-6746-01 12 18836255 18836255 T C PLCZ1 Missense_Mutation p.Y582C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 12 2055222 2055222 A - DCP1B 3'UTR 0.40 TCGA-CK-6746-01 12 21715927 21715927 A C GYS2 Silent p.A329A 0.47 TCGA-CK-6746-01 12 22486986 22486986 C - ST8SIA1 Frame_Shift_Del p.V61Cfs*34 0.42 TCGA-CK-6746-01 12 22602795 22602795 C T C2CD5 Missense_Mutation p.A968T 0.43 deleterious(0.01) possibly_damaging(0.694) TCGA-CK-6746-01 12 2721075 2721075 G A CACNA1C Missense_Mutation p.G1262S 0.58 tolerated(0.09) benign(0.196) TCGA-CK-6746-01 12 274926 274926 G A IQSEC3 Silent p.P947P 0.38 TCGA-CK-6746-01 12 27533276 27533276 G A ARNTL2 Silent p.A141A 0.39 TCGA-CK-6746-01 12 33592483 33592483 T - SYT10 5'UTR 0.24 TCGA-CK-6746-01 12 4922865 4922865 G C KCNA6 3'UTR 0.42 TCGA-CK-6746-01 12 49373441 49373441 A G WNT1 Missense_Mutation p.N99D 0.44 tolerated(0.05) benign(0.192) TCGA-CK-6746-01 12 49420204 49420204 C - KMT2D Frame_Shift_Del p.G5182Afs*61 0.54 TCGA-CK-6746-01 12 49434718 49434719 - A KMT2D Frame_Shift_Ins p.G2279Wfs*20 0.33 TCGA-CK-6746-01 12 49521894 49521894 C T TUBA1B Silent p.K401K 0.48 TCGA-CK-6746-01 12 50185695 50185695 G - NCKAP5L Frame_Shift_Del p.P1311Qfs*57 0.29 TCGA-CK-6746-01 12 5153636 5153636 A G KCNA5 Missense_Mutation p.E108G 0.10 tolerated(0.26) benign(0.002) TCGA-CK-6746-01 12 52115549 52115549 G A SCN8A Missense_Mutation p.G619S 0.28 tolerated(0.65) possibly_damaging(0.884) TCGA-CK-6746-01 12 52159833 52159833 T - SCN8A Intron 0.27 TCGA-CK-6746-01 12 53450811 53450811 T G TENC1 Missense_Mutation p.L269R 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 12 53663255 53663255 C T ESPL1 Missense_Mutation p.L177F 0.37 tolerated(0.1) possibly_damaging(0.803) TCGA-CK-6746-01 12 55945641 55945641 C T OR6C4 Silent p.L211L 0.33 TCGA-CK-6746-01 12 56114969 56114969 A G RDH5 Translation_Start_Site p.M1? 0.37 deleterious(0.01) unknown(0) TCGA-CK-6746-01 12 56489534 56489534 C T ERBB3 Missense_Mutation p.R667C 0.37 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 12 56530654 56530654 C G ESYT1 Missense_Mutation p.L597V 0.33 tolerated(0.12) benign(0.026) TCGA-CK-6746-01 12 56600560 56600560 C T RNF41 Missense_Mutation p.A209T 0.44 deleterious(0.01) benign(0.279) TCGA-CK-6746-01 12 56862924 56862924 A G SPRYD4 Missense_Mutation p.K63E 0.45 tolerated(0.35) benign(0.038) TCGA-CK-6746-01 12 57132258 57132259 CT - PRIM1 Frame_Shift_Del p.E368Gfs*3 0.32 TCGA-CK-6746-01 12 57327752 57327752 G A SDR9C7 Silent p.G98G 0.50 TCGA-CK-6746-01 12 57454693 57454693 G - TMEM194A Frame_Shift_Del p.P339Lfs*4 0.28 TCGA-CK-6746-01 12 57490455 57490455 C - STAT6 Frame_Shift_Del p.G815Efs*27 0.27 TCGA-CK-6746-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.47 TCGA-CK-6746-01 12 58005763 58005763 G - ARHGEF25 Intron 0.32 TCGA-CK-6746-01 12 6428049 6428049 T C PLEKHG6 Intron 0.40 TCGA-CK-6746-01 12 64587857 64587857 A G C12orf66 Missense_Mutation p.M368T 0.35 deleterious(0) possibly_damaging(0.872) TCGA-CK-6746-01 12 65016324 65016324 C T RASSF3 Intron 0.46 TCGA-CK-6746-01 12 66704382 66704382 G A HELB Silent p.L558L 0.49 TCGA-CK-6746-01 12 6680111 6680111 G A CHD4 Missense_Mutation p.A1882V 0.53 deleterious(0) probably_damaging(0.992) TCGA-CK-6746-01 12 6690530 6690530 T - CHD4 Frame_Shift_Del p.N1569Ifs*9 0.31 TCGA-CK-6746-01 12 6787460 6787460 G A ZNF384 Silent p.T173T 0.36 TCGA-CK-6746-01 12 68054198 68054199 - A DYRK2 3'UTR 0.33 TCGA-CK-6746-01 12 6833891 6833891 G - COPS7A Frame_Shift_Del p.A25Qfs*55 0.19 TCGA-CK-6746-01 12 7030945 7030945 C T ENO2 Missense_Mutation p.A356V 0.43 deleterious_low_confidence(0.05) possibly_damaging(0.501) TCGA-CK-6746-01 12 72013131 72013131 G A ZFC3H1 Missense_Mutation p.P1703L 0.39 tolerated(0.39) benign(0.004) TCGA-CK-6746-01 12 72038781 72038781 T - ZFC3H1 Frame_Shift_Del p.K385Nfs*9 0.27 TCGA-CK-6746-01 12 7556131 7556131 C G CD163L1 Missense_Mutation p.D470H 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-CK-6746-01 12 77449690 77449690 T - E2F7 Frame_Shift_Del p.K105Rfs*43 0.30 TCGA-CK-6746-01 12 8083089 8083089 C T SLC2A3 Silent p.E220E 0.43 TCGA-CK-6746-01 12 80865969 80865969 G A PTPRQ Silent p.A371A 0.44 TCGA-CK-6746-01 12 81647323 81647323 T C ACSS3 Silent p.V623V 0.08 TCGA-CK-6746-01 12 90005120 90005120 C A ATP2B1 Missense_Mutation p.R699S 0.32 deleterious(0.04) possibly_damaging(0.574) TCGA-CK-6746-01 12 91550941 91550941 C A DCN Missense_Mutation p.S188I 0.43 deleterious(0) possibly_damaging(0.785) TCGA-CK-6746-01 12 94244000 94244000 C T CRADD Missense_Mutation p.R185W 0.44 deleterious(0.01) possibly_damaging(0.498) TCGA-CK-6746-01 12 95434351 95434351 G T NR2C1 Missense_Mutation p.P385H 0.41 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 12 95602753 95602753 T C FGD6 Missense_Mutation p.I769M 0.41 tolerated(0.14) benign(0.007) TCGA-CK-6746-01 12 994659 994659 G A WNK1 Silent p.Q1563Q 0.44 TCGA-CK-6746-01 13 101763528 101763528 C T NALCN Missense_Mutation p.A748T 0.45 tolerated(0.47) benign(0.002) TCGA-CK-6746-01 13 103386872 103386872 C T CCDC168 Missense_Mutation p.R763H 0.45 tolerated(0.08) possibly_damaging(0.715) TCGA-CK-6746-01 13 108886272 108886273 GT - ABHD13 3'UTR 0.30 TCGA-CK-6746-01 13 109793564 109793564 C T MYO16 Silent p.D1646D 0.43 TCGA-CK-6746-01 13 110862370 110862370 C A COL4A1 Missense_Mutation p.G191V 0.41 unknown(0) TCGA-CK-6746-01 13 111367770 111367771 - C ING1 5'UTR 0.43 TCGA-CK-6746-01 13 111545611 111545611 C T ANKRD10 Splice_Site p.X152_splice 0.38 TCGA-CK-6746-01 13 114203838 114203838 A G TMCO3 Silent p.R673R 0.43 TCGA-CK-6746-01 13 19997210 19997210 C T TPTE2 Missense_Mutation p.E521K 0.40 deleterious(0.03) possibly_damaging(0.746) TCGA-CK-6746-01 13 20224194 20224194 A - MPHOSPH8 Frame_Shift_Del p.N459Mfs*20 0.28 TCGA-CK-6746-01 13 21734098 21734098 T C SKA3 Silent p.V286V 0.17 TCGA-CK-6746-01 13 23898591 23898591 G A SGCG Missense_Mutation p.E263K 0.49 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 13 24190096 24190096 C T TNFRSF19 Missense_Mutation p.P91S 0.47 tolerated(0.08) benign(0.177) TCGA-CK-6746-01 13 24243035 24243035 T A TNFRSF19 Missense_Mutation p.D348E 0.34 tolerated_low_confidence(0.15) benign(0.021) TCGA-CK-6746-01 13 25479881 25479881 G A CENPJ Silent p.S765S 0.46 TCGA-CK-6746-01 13 25745466 25745466 T C AMER2 Missense_Mutation p.T98A 0.41 tolerated(0.81) benign(0.007) TCGA-CK-6746-01 13 30077345 30077345 G A MTUS2 3'UTR 0.54 TCGA-CK-6746-01 13 32877920 32877920 T G ZAR1L 3'UTR 0.44 TCGA-CK-6746-01 13 32929297 32929297 A G BRCA2 Missense_Mutation p.N2436S 0.42 tolerated(0.62) possibly_damaging(0.487) TCGA-CK-6746-01 13 33692305 33692305 C A STARD13 Missense_Mutation p.Q726H 0.36 deleterious(0.01) benign(0.19) TCGA-CK-6746-01 13 33760161 33760161 G T STARD13 Intron 0.40 TCGA-CK-6746-01 13 36767967 36767970 AAAC - SOHLH2 Frame_Shift_Del p.V177Lfs*2 0.43 TCGA-CK-6746-01 13 37453836 37453836 C T SMAD9 5'UTR 0.34 TCGA-CK-6746-01 13 38137316 38137316 A - POSTN 3'UTR 0.50 TCGA-CK-6746-01 13 39612697 39612697 G A NHLRC3 5'UTR 0.39 TCGA-CK-6746-01 13 41704811 41704811 A - KBTBD6 Frame_Shift_Del p.C613Afs*34 0.34 TCGA-CK-6746-01 13 50275524 50275524 T G KPNA3 3'UTR 0.55 TCGA-CK-6746-01 13 52749791 52749791 G A MRPS31P5 RNA 0.68 TCGA-CK-6746-01 13 53216743 53216743 C T HNRNPA1L2 Missense_Mutation p.T39M 0.26 tolerated(0.41) benign(0.222) TCGA-CK-6746-01 13 70293604 70293604 C A KLHL1 Missense_Mutation p.G638W 0.43 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 13 77459473 77459473 A G KCTD12 Missense_Mutation p.Y271H 0.39 deleterious(0.05) possibly_damaging(0.635) TCGA-CK-6746-01 13 77641917 77641917 G - MYCBP2 Frame_Shift_Del p.P4047Qfs*26 0.28 TCGA-CK-6746-01 13 77792023 77792023 C T MYCBP2 Silent p.T965T 0.43 TCGA-CK-6746-01 13 77841995 77841995 A G MYCBP2 Silent p.D408D 0.44 TCGA-CK-6746-01 13 88331180 88331180 G T SLITRK5 3'UTR 0.46 TCGA-CK-6746-01 13 95830303 95830303 C A ABCC4 Missense_Mutation p.D530Y 0.34 deleterious(0) probably_damaging(0.991) TCGA-CK-6746-01 13 96412341 96412342 TA - DNAJC3 Frame_Shift_Del p.I199Kfs*6 0.30 TCGA-CK-6746-01 13 97484796 97484796 G A HS6ST3 Missense_Mutation p.E254K 0.27 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 14 100192912 100192912 A G CYP46A1 Missense_Mutation p.M451V 0.36 deleterious(0.01) possibly_damaging(0.872) TCGA-CK-6746-01 14 101512318 101512318 G A MIR381 RNA 0.36 TCGA-CK-6746-01 14 102028530 102028530 C T DIO3 Nonsense_Mutation p.Q233* 0.39 TCGA-CK-6746-01 14 104173451 104173451 G A XRCC3 Silent p.L99L 0.28 TCGA-CK-6746-01 14 104605611 104605611 G A KIF26A Missense_Mutation p.G92R 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-CK-6746-01 14 104633326 104633326 C - KIF26A Frame_Shift_Del p.C354Afs*19 0.68 TCGA-CK-6746-01 14 105267802 105267802 C A ZBTB42 Missense_Mutation p.L90M 0.59 deleterious(0.03) possibly_damaging(0.611) TCGA-CK-6746-01 14 105693009 105693010 - G BRF1 Frame_Shift_Ins p.S293Lfs*15 0.32 TCGA-CK-6746-01 14 105936304 105936304 T C MTA1 Missense_Mutation p.F658L 0.50 tolerated(0.23) benign(0.002) TCGA-CK-6746-01 14 106236658 106236658 G A IGHG3 Silent p.D136D 0.29 TCGA-CK-6746-01 14 106622071 106622071 C A IGHV3-16 Missense_Mutation p.K58N 0.44 deleterious_low_confidence(0) benign(0.04) TCGA-CK-6746-01 14 19553755 19553755 C T POTEG Silent p.G113G 0.10 TCGA-CK-6746-01 14 20216360 20216360 C A OR4Q3 Silent p.I258I 0.28 TCGA-CK-6746-01 14 20849775 20849775 C T TEP1 Missense_Mutation p.A1499T 0.74 deleterious(0.04) benign(0.068) TCGA-CK-6746-01 14 21991193 21991193 A G SALL2 Missense_Mutation p.L890S 0.23 tolerated(0.61) benign(0.001) TCGA-CK-6746-01 14 22038379 22038379 C T OR10G3 Missense_Mutation p.R166H 0.40 tolerated(0.23) benign(0.013) TCGA-CK-6746-01 14 22134189 22134189 T C OR4E2 Missense_Mutation p.M298T 0.44 deleterious(0) benign(0.001) TCGA-CK-6746-01 14 23072603 23072603 A G ABHD4 Missense_Mutation p.I141V 0.33 tolerated(0.32) benign(0.085) TCGA-CK-6746-01 14 23502761 23502761 G A PSMB5 Silent p.G107G 0.37 TCGA-CK-6746-01 14 24113673 24113673 T C DHRS2 Missense_Mutation p.L199P 0.40 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 14 24656690 24656690 A G IPO4 Silent p.L168L 0.33 TCGA-CK-6746-01 14 24880287 24880287 G A NYNRIN Missense_Mutation p.G807D 0.57 deleterious_low_confidence(0) probably_damaging(1) TCGA-CK-6746-01 14 26917782 26917782 C T NOVA1 Missense_Mutation p.V303I 0.49 tolerated(0.37) unknown(0) TCGA-CK-6746-01 14 27066542 27066542 G - NOVA1 Frame_Shift_Del p.P34Lfs*19 0.41 TCGA-CK-6746-01 14 31177242 31177242 G T SCFD1 Nonsense_Mutation p.G534* 0.39 TCGA-CK-6746-01 14 31549817 31549817 C T AP4S1 Silent p.H111H 0.43 TCGA-CK-6746-01 14 38679005 38679005 C T SSTR1 Silent p.D137D 0.28 TCGA-CK-6746-01 14 38680116 38680116 C T SSTR1 3'UTR 0.23 TCGA-CK-6746-01 14 38681110 38681110 G A SSTR1 3'UTR 0.47 TCGA-CK-6746-01 14 39771450 39771450 T G CTAGE5 Missense_Mutation p.L310V 0.43 deleterious(0.03) benign(0.059) TCGA-CK-6746-01 14 42356421 42356421 C A LRFN5 Missense_Mutation p.T198N 0.46 tolerated(0.2) benign(0.008) TCGA-CK-6746-01 14 47120482 47120482 C T RPL10L Missense_Mutation p.R153H 0.57 tolerated(0.18) benign(0.026) TCGA-CK-6746-01 14 47120952 47120952 A T RPL10L 5'UTR 0.43 TCGA-CK-6746-01 14 50626352 50626352 C T SOS2 Missense_Mutation p.R550Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 14 52174809 52174809 G - FRMD6 Frame_Shift_Del p.K193Rfs*5 0.27 TCGA-CK-6746-01 14 52481919 52481919 G - NID2 Frame_Shift_Del p.R1035Gfs*67 0.30 TCGA-CK-6746-01 14 52898968 52898968 A G TXNDC16 3'UTR 0.08 TCGA-CK-6746-01 14 55453895 55453895 A G WDHD1 Silent p.H579H 0.49 TCGA-CK-6746-01 14 59112383 59112383 A - DACT1 Frame_Shift_Del p.T350Hfs*4 0.22 TCGA-CK-6746-01 14 65008050 65008050 C T HSPA2 Silent p.D161D 0.32 TCGA-CK-6746-01 14 65035126 65035126 A - PPP1R36 Frame_Shift_Del p.N167Tfs*12 0.32 TCGA-CK-6746-01 14 68290312 68290312 C T RAD51B Missense_Mutation p.R18C 0.47 tolerated(0.09) benign(0.112) TCGA-CK-6746-01 14 69256811 69256811 C T ZFP36L1 Silent p.K152K 0.54 TCGA-CK-6746-01 14 70635055 70635055 G T SLC8A3 Silent p.R29R 0.58 TCGA-CK-6746-01 14 71227722 71227722 C T MAP3K9 Nonsense_Mutation p.W333* 0.12 TCGA-CK-6746-01 14 74531436 74531436 G A CCDC176 3'UTR 0.40 TCGA-CK-6746-01 14 76123794 76123794 T C C14orf1 Missense_Mutation p.I18V 0.39 tolerated(0.43) benign(0.014) TCGA-CK-6746-01 14 77229171 77229171 G - VASH1 Frame_Shift_Del p.K5Rfs*146 0.30 TCGA-CK-6746-01 14 77275490 77275490 A G ANGEL1 Silent p.P187P 0.53 TCGA-CK-6746-01 14 77772683 77772683 T C POMT2 Silent p.R145R 0.07 TCGA-CK-6746-01 14 88946606 88946606 C T PTPN21 Missense_Mutation p.R390H 0.39 tolerated(0.1) probably_damaging(0.999) TCGA-CK-6746-01 14 91701423 91701423 A G GPR68 5'UTR 0.39 TCGA-CK-6746-01 14 93263792 93263792 T C GOLGA5 Missense_Mutation p.F4L 0.36 tolerated(0.39) benign(0.001) TCGA-CK-6746-01 14 94088748 94088748 C T UNC79 Silent p.A1546A 0.32 TCGA-CK-6746-01 14 94419792 94419792 C T ASB2 Silent p.T180T 0.58 TCGA-CK-6746-01 14 99640787 99640787 C T BCL11B Missense_Mutation p.D796N 0.67 deleterious(0) benign(0.053) TCGA-CK-6746-01 15 101438350 101438350 G - ALDH1A3 Frame_Shift_Del p.K284Rfs*83 0.32 TCGA-CK-6746-01 15 22382943 22382943 T C OR4N4 Silent p.I157I 0.82 TCGA-CK-6746-01 15 23811897 23811898 - C MKRN3 Frame_Shift_Ins p.N325Qfs*2 0.30 TCGA-CK-6746-01 15 23932371 23932371 G A NDN 5'UTR 0.68 TCGA-CK-6746-01 15 24921184 24921184 G A NPAP1 Missense_Mutation p.R57H 0.38 tolerated(0.08) possibly_damaging(0.715) TCGA-CK-6746-01 15 24925300 24925300 A G NPAP1 3'UTR 0.63 TCGA-CK-6746-01 15 24925744 24925744 A T NPAP1 3'UTR 0.50 TCGA-CK-6746-01 15 27725836 27725837 - C GABRG3 Frame_Shift_Ins p.N206Qfs*7 0.26 TCGA-CK-6746-01 15 28000596 28000596 C T OCA2 Missense_Mutation p.V819M 0.45 tolerated(0.2) benign(0.189) TCGA-CK-6746-01 15 28259995 28259995 C T OCA2 Missense_Mutation p.R324H 0.42 tolerated(0.2) benign(0.002) TCGA-CK-6746-01 15 28273114 28273114 G A OCA2 Silent p.L140L 0.50 TCGA-CK-6746-01 15 28366497 28366497 T C HERC2 Missense_Mutation p.I4423V 0.39 benign(0.025) TCGA-CK-6746-01 15 28929307 28929307 A G RP11-578F21.2 5'Flank 0.33 TCGA-CK-6746-01 15 30918918 30918918 G A ARHGAP11B 5'UTR 0.80 TCGA-CK-6746-01 15 33359070 33359070 G T FMN1 Missense_Mutation p.P339H 0.47 deleterious(0) unknown(0) TCGA-CK-6746-01 15 33603189 33603189 G A RYR3 5'UTR 0.56 TCGA-CK-6746-01 15 34080640 34080640 C T RYR3 Missense_Mutation p.R3271C 0.48 probably_damaging(0.978) TCGA-CK-6746-01 15 34648735 34648735 A G NUTM1 Silent p.P814P 0.43 TCGA-CK-6746-01 15 34656398 34656398 C T LPCAT4 Silent p.P196P 0.50 TCGA-CK-6746-01 15 34673934 34673934 G A GOLGA8A Missense_Mutation p.P526L 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-CK-6746-01 15 37390255 37390255 G A MEIS2 Missense_Mutation p.A53V 0.34 tolerated(0.13) benign(0.004) TCGA-CK-6746-01 15 40586496 40586496 C T PLCB2 Missense_Mutation p.V678M 0.21 deleterious(0.04) probably_damaging(0.953) TCGA-CK-6746-01 15 40855044 40855044 A G C15orf57 Silent p.A66A 0.11 TCGA-CK-6746-01 15 41099559 41099559 G A ZFYVE19 5'UTR 0.30 TCGA-CK-6746-01 15 43019931 43019931 C T CDAN1 Missense_Mutation p.R995H 0.53 deleterious(0) probably_damaging(0.989) TCGA-CK-6746-01 15 44086130 44086130 C A SERF2 Missense_Mutation p.P158H 0.36 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-CK-6746-01 15 45003747 45003747 G A B2M Translation_Start_Site p.M1? 0.41 deleterious(0) possibly_damaging(0.775) TCGA-CK-6746-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.42 TCGA-CK-6746-01 15 45545686 45545686 G - SLC28A2 Frame_Shift_Del p.D48Mfs*52 0.25 TCGA-CK-6746-01 15 50546834 50546834 C A HDC Missense_Mutation p.A157S 0.33 tolerated(0.29) possibly_damaging(0.584) TCGA-CK-6746-01 15 50555435 50555435 A G HDC Silent p.P67P 0.22 TCGA-CK-6746-01 15 52571735 52571735 G A MYO5C Missense_Mutation p.A92V 0.41 tolerated(0.9) benign(0.005) TCGA-CK-6746-01 15 53049699 53049699 A T ONECUT1 3'UTR 0.47 TCGA-CK-6746-01 15 56152926 56152926 C T NEDD4 Missense_Mutation p.R589H 0.45 tolerated(0.96) benign(0.012) TCGA-CK-6746-01 15 56757268 56757268 G A MNS1 5'UTR 0.55 TCGA-CK-6746-01 15 57565326 57565326 G T TCF12 Missense_Mutation p.R615L 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 15 59063767 59063767 C T FAM63B Missense_Mutation p.A58V 0.47 deleterious_low_confidence(0) benign(0.129) TCGA-CK-6746-01 15 64967694 64967694 C - ZNF609 Frame_Shift_Del p.P882Lfs*30 0.26 TCGA-CK-6746-01 15 65421435 65421435 A G PDCD7 Missense_Mutation p.M315T 0.45 deleterious(0) possibly_damaging(0.813) TCGA-CK-6746-01 15 65938035 65938035 C T SLC24A1 Silent p.G742G 0.34 TCGA-CK-6746-01 15 72104208 72104208 C T NR2E3 Intron 0.24 TCGA-CK-6746-01 15 72432223 72432223 T - SENP8 Frame_Shift_Del p.L88* 0.36 TCGA-CK-6746-01 15 75501022 75501022 T C C15orf39 Missense_Mutation p.L878P 0.53 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 15 75644674 75644674 C - NEIL1 Frame_Shift_Del p.F191Lfs*20 0.33 TCGA-CK-6746-01 15 76031305 76031305 G A AC019294.1 3'UTR 0.40 TCGA-CK-6746-01 15 76496716 76496716 C A C15orf27 3'UTR 0.56 TCGA-CK-6746-01 15 78825848 78825848 G A HYKK Missense_Mutation p.A320T 0.29 deleterious(0) probably_damaging(0.931) TCGA-CK-6746-01 15 79298659 79298659 C T RASGRF1 Silent p.T661T 0.56 TCGA-CK-6746-01 15 83826242 83826242 T C HDGFRP3 Silent p.R128R 0.39 TCGA-CK-6746-01 15 85610340 85610340 T G PDE8A Silent p.A113A 0.38 TCGA-CK-6746-01 15 90286600 90286601 AG - WDR93 Frame_Shift_Del p.N683Lfs*13 0.36 TCGA-CK-6746-01 15 90320300 90320301 - G MESP2 Frame_Shift_Ins p.V240Gfs*127 0.37 TCGA-CK-6746-01 15 90320364 90320364 C T MESP2 Missense_Mutation p.P259L 0.38 tolerated(0.55) benign(0.003) TCGA-CK-6746-01 15 90631918 90631918 C - IDH2 Frame_Shift_Del p.T146Lfs*15 0.36 TCGA-CK-6746-01 15 91016946 91016946 G A IQGAP1 Splice_Site p.X784_splice 0.43 TCGA-CK-6746-01 15 96877532 96877532 G A NR2F2 Missense_Mutation p.V224I 0.27 tolerated(0.2) benign(0.272) TCGA-CK-6746-01 16 11002906 11002906 T C CIITA Missense_Mutation p.V893A 0.34 deleterious(0.03) benign(0.14) TCGA-CK-6746-01 16 11141159 11141159 T - CLEC16A Frame_Shift_Del p.L611Wfs*11 0.28 TCGA-CK-6746-01 16 111608 111608 A G RHBDF1 Missense_Mutation p.F432S 0.12 deleterious(0) probably_damaging(0.939) TCGA-CK-6746-01 16 1129714 1129714 C T SSTR5 Silent p.S282S 0.50 TCGA-CK-6746-01 16 1143816 1143816 G T C1QTNF8 Silent p.A148A 0.50 TCGA-CK-6746-01 16 11979087 11979087 T C GSPT1 Missense_Mutation p.N433S 0.41 tolerated(0.33) benign(0.004) TCGA-CK-6746-01 16 12758726 12758726 G A CPPED1 3'UTR 0.50 TCGA-CK-6746-01 16 1420245 1420245 G A UNKL Nonsense_Mutation p.Q488* 0.47 TCGA-CK-6746-01 16 15222195 15222195 C A RP11-1186N24.5 RNA 0.36 TCGA-CK-6746-01 16 15730008 15730008 C T KIAA0430 Silent p.S112S 0.45 TCGA-CK-6746-01 16 16235071 16235071 C - ABCC1 Frame_Shift_Del p.P1511Hfs*54 0.38 TCGA-CK-6746-01 16 1824306 1824306 C T EME2 Silent p.L144L 0.42 TCGA-CK-6746-01 16 18544425 18544425 G A NOMO2 Silent p.L433L 0.37 TCGA-CK-6746-01 16 2086790 2086790 G A SLC9A3R2 Missense_Mutation p.R219Q 0.41 deleterious(0.05) benign(0.016) TCGA-CK-6746-01 16 2115530 2115530 G A TSC2 Missense_Mutation p.R537H 0.54 tolerated(0.08) benign(0.002) TCGA-CK-6746-01 16 23453819 23453819 C T COG7 Missense_Mutation p.A195T 0.50 tolerated(0.33) benign(0.174) TCGA-CK-6746-01 16 23607476 23607476 C T NDUFAB1 Missense_Mutation p.G46R 0.31 tolerated(0.26) benign(0.014) TCGA-CK-6746-01 16 23711986 23711986 G - ERN2 Frame_Shift_Del p.L515Wfs*48 0.34 TCGA-CK-6746-01 16 2546682 2546682 C T RP11-20I23.1 Missense_Mutation p.S178L 0.57 deleterious(0.01) possibly_damaging(0.491) TCGA-CK-6746-01 16 27506767 27506767 G A GTF3C1 Silent p.R799R 0.36 TCGA-CK-6746-01 16 2854414 2854414 T C PRSS41 RNA 0.34 TCGA-CK-6746-01 16 28884922 28884922 C T SH2B1 Silent p.G684G 0.35 TCGA-CK-6746-01 16 28912145 28912145 T C ATP2A1 Missense_Mutation p.C670R 0.51 deleterious(0.01) possibly_damaging(0.719) TCGA-CK-6746-01 16 28996226 28996227 - G LAT Frame_Shift_Ins p.A18Gfs*8 0.27 TCGA-CK-6746-01 16 29818711 29818711 G A MAZ Missense_Mutation p.G202D 0.27 deleterious(0.04) probably_damaging(0.982) TCGA-CK-6746-01 16 29842318 29842318 G A MVP Missense_Mutation p.R82Q 0.70 tolerated(0.09) benign(0.004) TCGA-CK-6746-01 16 30002425 30002425 C T TAOK2 3'Flank 0.56 TCGA-CK-6746-01 16 30369994 30369994 A G TBC1D10B Missense_Mutation p.L596P 0.54 deleterious(0) probably_damaging(0.995) TCGA-CK-6746-01 16 30671650 30671651 - G FBRS Frame_Shift_Ins p.S179Lfs*13 0.18 TCGA-CK-6746-01 16 30977317 30977317 C - SETD1A Frame_Shift_Del p.G708Vfs*95 0.35 TCGA-CK-6746-01 16 30978236 30978238 AGG - SETD1A In_Frame_Del p.E848del 0.35 TCGA-CK-6746-01 16 30994962 30994962 G A SETD1A Missense_Mutation p.A1607T 0.51 unknown(0) TCGA-CK-6746-01 16 31096553 31096553 G A PRSS53 Silent p.P304P 0.42 TCGA-CK-6746-01 16 31234173 31234173 C - TRIM72 Frame_Shift_Del p.P257Hfs*28 0.43 TCGA-CK-6746-01 16 31391912 31391912 G A ITGAX Silent p.Q1081Q 0.45 TCGA-CK-6746-01 16 3333898 3333898 A G ZNF263 Missense_Mutation p.E27G 0.29 tolerated(0.1) probably_damaging(0.986) TCGA-CK-6746-01 16 4163957 4163957 A C ADCY9 Missense_Mutation p.L496R 0.38 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 16 4405121 4405121 T C CORO7 3'UTR 0.41 TCGA-CK-6746-01 16 4431287 4431287 C T VASN Missense_Mutation p.R137C 0.41 deleterious(0.04) benign(0.027) TCGA-CK-6746-01 16 4493048 4493048 C T DNAJA3 Missense_Mutation p.R272C 0.44 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 16 47684459 47684459 C T PHKB Missense_Mutation p.A601V 0.53 tolerated(0.1) benign(0.311) TCGA-CK-6746-01 16 4924953 4924953 G T UBN1 Missense_Mutation p.A848S 0.43 tolerated_low_confidence(0.77) benign(0.012) TCGA-CK-6746-01 16 50134201 50134201 G - HEATR3 Frame_Shift_Del p.V555Lfs*3 0.33 TCGA-CK-6746-01 16 5046991 5046991 C - SEC14L5 Frame_Shift_Del p.P307Lfs*17 0.36 TCGA-CK-6746-01 16 55719086 55719086 G A SLC6A2 Missense_Mutation p.G226R 0.44 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 16 56309876 56309876 C T GNAO1 Silent p.D65D 0.54 TCGA-CK-6746-01 16 56468724 56468724 T C NUDT21 Silent p.A163A 0.24 TCGA-CK-6746-01 16 56871626 56871626 C T NUP93 Missense_Mutation p.S669F 0.29 deleterious(0.02) possibly_damaging(0.815) TCGA-CK-6746-01 16 58019150 58019150 C T TEPP Silent p.P222P 0.31 TCGA-CK-6746-01 16 58557389 58557389 T G CNOT1 Missense_Mutation p.N2268H 0.27 deleterious(0) possibly_damaging(0.877) TCGA-CK-6746-01 16 58616772 58616772 A G CNOT1 Silent p.D323D 0.38 TCGA-CK-6746-01 16 58619396 58619396 G A CNOT1 Missense_Mutation p.R218C 0.53 tolerated(0.11) possibly_damaging(0.719) TCGA-CK-6746-01 16 61687567 61687567 C T CDH8 Missense_Mutation p.R782H 0.40 tolerated(0.11) probably_damaging(0.91) TCGA-CK-6746-01 16 633554 633554 G A PIGQ Missense_Mutation p.V735I 0.36 deleterious_low_confidence(0.03) benign(0.103) TCGA-CK-6746-01 16 66642254 66642254 G A CMTM3 Missense_Mutation p.A64T 0.38 tolerated(0.06) possibly_damaging(0.553) TCGA-CK-6746-01 16 66819774 66819774 A G CCDC79 Silent p.H205H 0.45 TCGA-CK-6746-01 16 66880965 66880965 G A CA7 Missense_Mutation p.A25T 0.41 deleterious(0) probably_damaging(0.979) TCGA-CK-6746-01 16 67264014 67264014 G A FHOD1 Silent p.L1057L 0.36 TCGA-CK-6746-01 16 67270885 67270885 G A FHOD1 Missense_Mutation p.R376C 0.39 deleterious(0.01) possibly_damaging(0.61) TCGA-CK-6746-01 16 67691145 67691145 G A RLTPR Missense_Mutation p.R1374Q 0.28 tolerated(0.06) probably_damaging(0.99) TCGA-CK-6746-01 16 67709024 67709024 C T GFOD2 3'UTR 0.42 TCGA-CK-6746-01 16 677527 677527 G A RAB40C Missense_Mutation p.G251S 0.36 tolerated_low_confidence(0.6) benign(0.008) TCGA-CK-6746-01 16 68014141 68014141 G A DPEP3 Missense_Mutation p.T73M 0.53 tolerated_low_confidence(0.07) benign(0.02) TCGA-CK-6746-01 16 69681432 69681432 A G NFAT5 Missense_Mutation p.H252R 0.42 probably_damaging(0.989) TCGA-CK-6746-01 16 71220675 71220677 CTT - HYDIN In_Frame_Del p.E41del 0.38 TCGA-CK-6746-01 16 71602113 71602113 C A TAT Silent p.R433R 0.43 TCGA-CK-6746-01 16 71887153 71887153 C - ATXN1L 3'UTR 0.26 TCGA-CK-6746-01 16 74447479 74447479 G - CLEC18B Frame_Shift_Del p.G185Efs*50 0.20 TCGA-CK-6746-01 16 74946176 74946176 A G WDR59 Missense_Mutation p.Y437H 0.47 deleterious(0) probably_damaging(0.982) TCGA-CK-6746-01 16 77353894 77353894 C T ADAMTS18 Missense_Mutation p.S795N 0.51 tolerated(0.36) benign(0.005) TCGA-CK-6746-01 16 778928 778928 G - HAGHL Intron 0.35 TCGA-CK-6746-01 16 81934267 81934267 G A PLCG2 Missense_Mutation p.R415H 0.40 deleterious(0) probably_damaging(0.997) TCGA-CK-6746-01 16 84179139 84179139 G A DNAAF1 Missense_Mutation p.G32R 0.39 tolerated(0.11) benign(0.25) TCGA-CK-6746-01 16 84494380 84494380 C T ATP2C2 Silent p.S818S 0.42 TCGA-CK-6746-01 16 85838570 85838570 C T COX4I1 Missense_Mutation p.S34L 0.47 deleterious(0.01) benign(0.054) TCGA-CK-6746-01 16 87723420 87723420 C T JPH3 Missense_Mutation p.A485V 0.30 tolerated(0.27) benign(0.014) TCGA-CK-6746-01 16 88781740 88781740 C T CTU2 3'UTR 0.67 TCGA-CK-6746-01 16 89345800 89345800 G A ANKRD11 Missense_Mutation p.P2384S 0.53 probably_damaging(0.999) TCGA-CK-6746-01 16 89783208 89783208 G - VPS9D1 Frame_Shift_Del p.D67Tfs*6 0.49 TCGA-CK-6746-01 16 89825051 89825051 C - FANCA Frame_Shift_Del p.G972Afs*17 0.32 TCGA-CK-6746-01 16 90001221 90001221 G A TUBB3 Missense_Mutation p.R121Q 0.54 deleterious_low_confidence(0.05) probably_damaging(0.98) TCGA-CK-6746-01 16 9916271 9916271 G T GRIN2A Missense_Mutation p.P673H 0.40 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 17 11622752 11622752 G A DNAH9 Missense_Mutation p.R1885H 0.41 probably_damaging(0.998) TCGA-CK-6746-01 17 11784536 11784536 A G DNAH9 Missense_Mutation p.I3538V 0.58 benign(0.158) TCGA-CK-6746-01 17 12013691 12013691 G A MAP2K4 Splice_Site p.X212_splice 0.40 TCGA-CK-6746-01 17 12656007 12656007 G A MYOCD Missense_Mutation p.A468T 0.40 tolerated(0.27) benign(0.016) TCGA-CK-6746-01 17 1549750 1549750 C T RILP Missense_Mutation p.A398T 0.44 tolerated_low_confidence(0.18) benign(0.001) TCGA-CK-6746-01 17 15498128 15498128 C T RP11-385D13.1 Missense_Mutation p.G904D 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-6746-01 17 1560054 1560054 A G PRPF8 Missense_Mutation p.L1836S 0.09 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 17 15952272 15952272 G A NCOR1 Silent p.H2141H 0.48 TCGA-CK-6746-01 17 16526706 16526706 T - ZNF624 Frame_Shift_Del p.K498Nfs*74 0.31 TCGA-CK-6746-01 17 16843700 16843700 C - TNFRSF13B Frame_Shift_Del p.D191Ifs*30 0.29 TCGA-CK-6746-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.57 TCGA-CK-6746-01 17 17919997 17919997 C T LRRC48 3'UTR 0.52 TCGA-CK-6746-01 17 18331731 18331731 G A KRT17P2 Splice_Site 0.46 TCGA-CK-6746-01 17 18881612 18881612 C T FAM83G Missense_Mutation p.S456N 0.42 tolerated(0.3) benign(0.008) TCGA-CK-6746-01 17 18918478 18918478 C T SLC5A10 Missense_Mutation p.R419C 0.57 tolerated(0.12) benign(0) TCGA-CK-6746-01 17 21319422 21319422 C A KCNJ12 Missense_Mutation p.D256E 0.20 tolerated(0.09) possibly_damaging(0.831) TCGA-CK-6746-01 17 2290369 2290369 C T MNT Silent p.S525S 0.50 TCGA-CK-6746-01 17 263714 263714 G T C17orf97 Missense_Mutation p.E360D 0.37 tolerated_low_confidence(0.8) unknown(0) TCGA-CK-6746-01 17 27016406 27016406 C T SUPT6H Missense_Mutation p.R1057C 0.35 deleterious(0) probably_damaging(0.985) TCGA-CK-6746-01 17 27248784 27248784 T - PHF12 Frame_Shift_Del p.N253Mfs*9 0.34 TCGA-CK-6746-01 17 27442837 27442837 C T MYO18A Missense_Mutation p.R691H 0.29 tolerated(0.06) benign(0.126) TCGA-CK-6746-01 17 27938644 27938644 G - ANKRD13B Frame_Shift_Del p.G319Afs*7 0.32 TCGA-CK-6746-01 17 3030733 3030733 G A OR1G1 Missense_Mutation p.T38M 0.43 deleterious(0) probably_damaging(0.991) TCGA-CK-6746-01 17 33521074 33521074 G T SLC35G3 Missense_Mutation p.L85M 0.41 tolerated(0.05) possibly_damaging(0.882) TCGA-CK-6746-01 17 34913103 34913103 A C GGNBP2 Missense_Mutation p.K119Q 0.46 tolerated(0.24) benign(0.001) TCGA-CK-6746-01 17 35468505 35468505 G A ACACA Missense_Mutation p.R2176W 0.45 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 17 35787089 35787089 A G TADA2A Missense_Mutation p.D58G 0.30 deleterious(0.03) benign(0.424) TCGA-CK-6746-01 17 35872743 35872743 C T DUSP14 Silent p.I123I 0.47 TCGA-CK-6746-01 17 35986096 35986096 G A DDX52 Silent p.G327G 0.29 TCGA-CK-6746-01 17 37006528 37006528 G A RPL23 Intron 0.56 TCGA-CK-6746-01 17 3716251 3716251 A G C17orf85 3'UTR 0.47 TCGA-CK-6746-01 17 37826414 37826415 - G PNMT Frame_Shift_Ins p.H210Afs*27 0.36 TCGA-CK-6746-01 17 38420890 38420890 C A WIPF2 Silent p.P154P 0.58 TCGA-CK-6746-01 17 40142354 40142354 T C DNAJC7 Missense_Mutation p.H176R 0.27 tolerated(0.64) benign(0.001) TCGA-CK-6746-01 17 40175912 40175912 A G NKIRAS2 3'UTR 0.31 TCGA-CK-6746-01 17 40344927 40344927 C T GHDC Silent p.L128L 0.50 TCGA-CK-6746-01 17 40845418 40845418 T C CNTNAP1 Silent p.G952G 0.38 TCGA-CK-6746-01 17 41290800 41290800 G A NBR2 RNA 0.40 TCGA-CK-6746-01 17 42394064 42394064 C T RUNDC3A Missense_Mutation p.T390M 0.38 deleterious_low_confidence(0) benign(0.318) TCGA-CK-6746-01 17 42428134 42428134 C A GRN Missense_Mutation p.P225H 0.43 deleterious(0) probably_damaging(0.949) TCGA-CK-6746-01 17 43535575 43535575 C A PLEKHM1 Missense_Mutation p.Q513H 0.59 tolerated(0.14) benign(0.332) TCGA-CK-6746-01 17 44954145 44954145 G A WNT9B 3'UTR 0.47 TCGA-CK-6746-01 17 4540413 4540413 G T ALOX15 Silent p.I316I 0.59 TCGA-CK-6746-01 17 47302215 47302215 C T PHOSPHO1 Missense_Mutation p.G91D 0.10 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 17 47903464 47903464 T C KAT7 Missense_Mutation p.L528P 0.42 deleterious(0) probably_damaging(0.997) TCGA-CK-6746-01 17 48190208 48190208 C T SAMD14 3'UTR 0.62 TCGA-CK-6746-01 17 48264275 48264275 G - COL1A1 Frame_Shift_Del p.G1181Afs*58 0.27 TCGA-CK-6746-01 17 48269227 48269227 G A COL1A1 Silent p.G683G 0.53 TCGA-CK-6746-01 17 4848087 4848087 C T RNF167 Missense_Mutation p.R277W 0.09 deleterious(0.01) benign(0.446) TCGA-CK-6746-01 17 48548454 48548454 G A ACSF2 Silent p.E427E 0.47 TCGA-CK-6746-01 17 48703863 48703864 - G CACNA1G Frame_Shift_Ins p.P2298Afs*13 0.41 TCGA-CK-6746-01 17 55950973 55950973 G T CUEDC1 Silent p.P190P 0.45 TCGA-CK-6746-01 17 56274475 56274475 G A EPX Missense_Mutation p.R326H 0.52 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 17 56280595 56280595 A G EPX Missense_Mutation p.E621G 0.50 deleterious(0.01) probably_damaging(1) TCGA-CK-6746-01 17 57181754 57181754 C G TRIM37 Missense_Mutation p.S8T 0.37 tolerated(0.2) benign(0.057) TCGA-CK-6746-01 17 60140517 60140517 C T MED13 Missense_Mutation p.R71Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 17 60140626 60140626 A G MED13 Missense_Mutation p.W35R 0.39 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 17 60755963 60755963 C T MRC2 Silent p.Y717Y 0.40 TCGA-CK-6746-01 17 61473189 61473189 A G TANC2 Missense_Mutation p.Q972R 0.38 tolerated(0.31) benign(0.038) TCGA-CK-6746-01 17 61988540 61988540 C T CSHL1 Intron 0.43 TCGA-CK-6746-01 17 62541846 62541854 AAAAAAGGG - SMURF2 3'UTR 0.50 TCGA-CK-6746-01 17 6546436 6546437 - A TXNDC17 3'UTR 0.29 TCGA-CK-6746-01 17 66267459 66267459 G A SLC16A6 Missense_Mutation p.A281V 0.37 tolerated(0.24) benign(0.009) TCGA-CK-6746-01 17 66883548 66883548 C T ABCA8 Missense_Mutation p.V1042I 0.47 tolerated(0.27) benign(0.009) TCGA-CK-6746-01 17 71384087 71384087 C T SDK2 Missense_Mutation p.G1428R 0.52 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 17 71418495 71418495 C T SDK2 Missense_Mutation p.R659H 0.42 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 17 72363783 72363783 C T GPR142 Missense_Mutation p.H47Y 0.52 deleterious_low_confidence(0) benign(0.403) TCGA-CK-6746-01 17 7245333 7245333 G A ACAP1 Missense_Mutation p.V60I 0.35 tolerated(0.28) benign(0.002) TCGA-CK-6746-01 17 72840562 72840562 G A GRIN2C Silent p.I812I 0.39 TCGA-CK-6746-01 17 72915950 72915950 G A USH1G Silent p.H327H 0.46 TCGA-CK-6746-01 17 72999795 72999795 G A CDR2L Missense_Mutation p.A342T 0.22 tolerated(0.06) possibly_damaging(0.777) TCGA-CK-6746-01 17 7318453 7318453 C T NLGN2 Silent p.D341D 0.53 TCGA-CK-6746-01 17 73501069 73501069 G - CASKIN2 Frame_Shift_Del p.P339Rfs*95 0.38 TCGA-CK-6746-01 17 73774605 73774605 A - H3F3B 3'UTR 0.24 TCGA-CK-6746-01 17 7386154 7386154 C T SLC35G6 Missense_Mutation p.A284V 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CK-6746-01 17 73910848 73910848 T C FBF1 Missense_Mutation p.T917A 0.45 tolerated(0.17) benign(0.003) TCGA-CK-6746-01 17 74073169 74073169 G A GALR2 Missense_Mutation p.R274H 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-CK-6746-01 17 74288904 74288904 C A QRICH2 Missense_Mutation p.R469I 0.46 tolerated(0.43) benign(0) TCGA-CK-6746-01 17 7484874 7484875 - G CD68 3'UTR 0.47 TCGA-CK-6746-01 17 7534641 7534641 G - SHBG Frame_Shift_Del p.L175Cfs*45 0.29 TCGA-CK-6746-01 17 7556794 7556794 A C ATP1B2 Missense_Mutation p.K72T 0.41 tolerated(0.33) benign(0.02) TCGA-CK-6746-01 17 76046306 76046306 C T TNRC6C Missense_Mutation p.A388V 0.50 deleterious(0.04) probably_damaging(0.999) TCGA-CK-6746-01 17 7606803 7606803 A - WRAP53 Frame_Shift_Del 0.31 TCGA-CK-6746-01 17 76201689 76201689 A C AFMID Missense_Mutation p.D217A 0.27 tolerated(1) possibly_damaging(0.596) TCGA-CK-6746-01 17 7637571 7637571 G A DNAH2 Silent p.E233E 0.34 TCGA-CK-6746-01 17 76993661 76993661 A G CANT1 Missense_Mutation p.M15T 0.41 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-CK-6746-01 17 77042639 77042639 C A C1QTNF1 Missense_Mutation p.A53D 0.30 tolerated_low_confidence(0.73) benign(0.003) TCGA-CK-6746-01 17 7794001 7794001 A - CHD3 Frame_Shift_Del p.K170Rfs*30 0.27 TCGA-CK-6746-01 17 79287736 79287736 G T TMEM105 Silent p.T35T 0.35 TCGA-CK-6746-01 17 79612324 79612324 C G TSPAN10 Missense_Mutation p.P115A 0.50 tolerated(0.75) possibly_damaging(0.728) TCGA-CK-6746-01 17 79826687 79826687 G - ARHGDIA 3'UTR 0.46 TCGA-CK-6746-01 17 80039073 80039073 G A FASN Nonsense_Mutation p.Q2188* 0.24 TCGA-CK-6746-01 17 80685151 80685151 A G FN3KRP 3'UTR 0.40 TCGA-CK-6746-01 17 81052216 81052216 G A METRNL Missense_Mutation p.G278R 0.30 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 17 8167638 8167638 G A PFAS Missense_Mutation p.G634S 0.09 deleterious(0.04) possibly_damaging(0.831) TCGA-CK-6746-01 17 8222092 8222092 C T ARHGEF15 Missense_Mutation p.R633W 0.46 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 17 970445 970445 G - ABR Frame_Shift_Del p.L352Wfs*29 0.44 TCGA-CK-6746-01 17 9873065 9873065 C T GAS7 Missense_Mutation p.A134T 0.34 tolerated(0.75) benign(0.001) TCGA-CK-6746-01 18 15316486 15316486 G T RNU6-721P 3'Flank 0.23 TCGA-CK-6746-01 18 18564348 18564349 TT - ROCK1 Frame_Shift_Del p.K818Efs*6 0.34 TCGA-CK-6746-01 18 21121114 21121114 T C NPC1 Missense_Mutation p.Q811R 0.47 tolerated(0.37) benign(0.001) TCGA-CK-6746-01 18 25532110 25532110 C A CDH2 3'UTR 0.34 TCGA-CK-6746-01 18 29056248 29056248 T C DSG3 3'UTR 0.27 TCGA-CK-6746-01 18 32889116 32889116 T A ZNF271 RNA 0.39 TCGA-CK-6746-01 18 3879897 3879897 C T DLGAP1 Missense_Mutation p.V58M 0.57 tolerated(1) benign(0.002) TCGA-CK-6746-01 18 43685275 43685275 G T HAUS1 Missense_Mutation p.R49M 0.35 deleterious(0) possibly_damaging(0.89) TCGA-CK-6746-01 18 52899837 52899837 C T TCF4 Missense_Mutation p.E620K 0.40 tolerated(0.64) possibly_damaging(0.661) TCGA-CK-6746-01 18 5406916 5406916 C T EPB41L3 Missense_Mutation p.E737K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-CK-6746-01 18 54339867 54339867 G A WDR7 Missense_Mutation p.G41R 0.42 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 18 56816824 56816824 G A SEC11C Missense_Mutation p.G56D 0.32 tolerated(0.21) benign(0.019) TCGA-CK-6746-01 18 59170238 59170238 C T CDH20 Silent p.Y238Y 0.38 TCGA-CK-6746-01 18 60242482 60242482 T C ZCCHC2 Silent p.N1056N 0.41 TCGA-CK-6746-01 18 61390311 61390312 - C SERPINB11 Frame_Shift_Ins p.R288Pfs*? 0.29 TCGA-CK-6746-01 18 65179885 65179885 G C DSEL Missense_Mutation p.A664G 0.44 tolerated(0.16) probably_damaging(0.958) TCGA-CK-6746-01 18 67809532 67809532 A G RTTN Missense_Mutation p.I858T 0.09 deleterious(0) probably_damaging(0.988) TCGA-CK-6746-01 18 77733682 77733682 G A TXNL4A 3'UTR 0.33 TCGA-CK-6746-01 19 10224524 10224524 G A P2RY11 Missense_Mutation p.A79T 0.41 tolerated(0.09) possibly_damaging(0.473) TCGA-CK-6746-01 19 10439412 10439412 C T RAVER1 Missense_Mutation p.R238H 0.30 deleterious(0.03) benign(0.005) TCGA-CK-6746-01 19 1047596 1047596 C T ABCA7 Silent p.L738L 0.47 TCGA-CK-6746-01 19 1052100 1052100 G A ABCA7 Missense_Mutation p.R1041H 0.39 tolerated(0.12) benign(0.001) TCGA-CK-6746-01 19 10657768 10657768 A G ATG4D Silent p.P249P 0.32 TCGA-CK-6746-01 19 11240135 11240135 C T LDLR Intron 0.36 TCGA-CK-6746-01 19 11283710 11283710 C T KANK2 Missense_Mutation p.E728K 0.36 tolerated(0.17) benign(0.009) TCGA-CK-6746-01 19 11558370 11558370 G A PRKCSH Silent p.E322E 0.46 TCGA-CK-6746-01 19 11944510 11944510 G A ZNF440 3'UTR 0.46 TCGA-CK-6746-01 19 12058330 12058330 A - ZNF700 Frame_Shift_Del p.K66Nfs*22 0.31 TCGA-CK-6746-01 19 12692125 12692125 C T ZNF490 Missense_Mutation p.C255Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 19 13041103 13041103 C - FARSA Frame_Shift_Del p.G146Dfs*14 0.37 TCGA-CK-6746-01 19 13211695 13211695 C T LYL1 Silent p.P97P 0.47 TCGA-CK-6746-01 19 13248189 13248189 C T NACC1 Missense_Mutation p.R409W 0.40 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 19 13879819 13879819 C T MRI1 Silent p.G302G 0.33 TCGA-CK-6746-01 19 14159994 14159994 C T IL27RA Nonsense_Mutation p.R424* 0.48 TCGA-CK-6746-01 19 1506226 1506226 G A ADAMTSL5 Missense_Mutation p.P402S 0.43 deleterious(0.03) probably_damaging(0.992) TCGA-CK-6746-01 19 15079287 15079287 G A SLC1A6 Missense_Mutation p.R126W 0.40 deleterious(0) possibly_damaging(0.758) TCGA-CK-6746-01 19 15224481 15224481 G A SYDE1 Missense_Mutation p.G639S 0.75 tolerated(0.42) benign(0.015) TCGA-CK-6746-01 19 15342650 15342650 T C EPHX3 Missense_Mutation p.Y89C 0.30 deleterious(0.01) benign(0.03) TCGA-CK-6746-01 19 15547836 15547836 G A WIZ Missense_Mutation p.R104C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 19 15662183 15662183 C T CYP4F22 Silent p.S499S 0.47 TCGA-CK-6746-01 19 1615616 1615616 G A TCF3 Intron 0.39 TCGA-CK-6746-01 19 16791320 16791320 G A TMEM38A Missense_Mutation p.V132M 0.38 deleterious(0.04) benign(0.111) TCGA-CK-6746-01 19 17405640 17405640 G A ABHD8 Missense_Mutation p.T259I 0.44 deleterious(0.04) benign(0.356) TCGA-CK-6746-01 19 18327631 18327631 G A PDE4C Silent p.L469L 0.38 TCGA-CK-6746-01 19 18507147 18507147 A G LRRC25 Silent p.D209D 0.42 TCGA-CK-6746-01 19 18547828 18547828 T C ISYNA1 Missense_Mutation p.S124G 0.43 tolerated(0.06) benign(0.003) TCGA-CK-6746-01 19 18779711 18779711 G A KLHL26 Missense_Mutation p.A502T 0.36 tolerated(0.06) benign(0.007) TCGA-CK-6746-01 19 19218737 19218737 T C SLC25A42 Missense_Mutation p.S178P 0.51 tolerated(0.2) probably_damaging(0.961) TCGA-CK-6746-01 19 1952916 1952916 C T CSNK1G2 Intron 0.61 TCGA-CK-6746-01 19 22193648 22193648 T C ZNF208 5'UTR 0.30 TCGA-CK-6746-01 19 23159785 23159785 G T ZNF728 Silent p.T118T 0.49 TCGA-CK-6746-01 19 2917823 2917823 A G ZNF57 Missense_Mutation p.T402A 0.48 tolerated(0.06) benign(0.194) TCGA-CK-6746-01 19 30101371 30101371 C T POP4 Missense_Mutation p.T39M 0.50 tolerated(0.27) benign(0.007) TCGA-CK-6746-01 19 31038967 31038967 G T ZNF536 Missense_Mutation p.G814V 0.36 deleterious(0) possibly_damaging(0.619) TCGA-CK-6746-01 19 33702173 33702173 G A SLC7A10 Missense_Mutation p.S325L 0.34 deleterious(0) probably_damaging(0.98) TCGA-CK-6746-01 19 35616210 35616210 C G LGI4 Missense_Mutation p.A501P 0.16 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 19 36106270 36106270 G A HAUS5 Missense_Mutation p.R156H 0.35 tolerated(0.39) benign(0.004) TCGA-CK-6746-01 19 36330265 36330265 C A NPHS1 Missense_Mutation p.A995S 0.57 tolerated(0.12) benign(0.299) TCGA-CK-6746-01 19 36341920 36341920 C T NPHS1 Missense_Mutation p.V157M 0.29 tolerated(0.18) benign(0.017) TCGA-CK-6746-01 19 36673780 36673780 T C ZNF565 Missense_Mutation p.Y363C 0.40 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 19 37440714 37440714 C - ZNF568 Frame_Shift_Del p.F222Lfs*160 0.25 TCGA-CK-6746-01 19 37734188 37734188 C T ZNF383 Silent p.G350G 0.43 TCGA-CK-6746-01 19 37975130 37975130 T A ZNF570 Missense_Mutation p.N202K 0.41 tolerated(0.3) benign(0) TCGA-CK-6746-01 19 38103173 38103173 A G ZNF540 Missense_Mutation p.E331G 0.38 deleterious(0) probably_damaging(0.992) TCGA-CK-6746-01 19 38376035 38376035 T - WDR87 Frame_Shift_Del p.K2720Rfs*57 0.32 TCGA-CK-6746-01 19 38376238 38376238 C A WDR87 Missense_Mutation p.Q2652H 0.41 unknown(0) TCGA-CK-6746-01 19 3964302 3964302 C T DAPK3 Missense_Mutation p.A165T 0.53 deleterious(0) probably_damaging(0.943) TCGA-CK-6746-01 19 39964107 39964107 G A SUPT5H Missense_Mutation p.R813H 0.52 deleterious(0) probably_damaging(0.992) TCGA-CK-6746-01 19 40316611 40316612 - G DYRK1B Frame_Shift_Ins p.Q545Pfs*30 0.47 TCGA-CK-6746-01 19 40899942 40899942 G A PRX Silent p.S1439S 0.41 TCGA-CK-6746-01 19 41444908 41444908 C A CYP2B7P RNA 0.40 TCGA-CK-6746-01 19 42132144 42132144 G A CEACAM4 Silent p.D85D 0.42 TCGA-CK-6746-01 19 425142 425142 C T SHC2 Missense_Mutation p.A422T 0.39 tolerated(0.19) benign(0.016) TCGA-CK-6746-01 19 42860040 42860040 C T MEGF8 Silent p.D1358D 0.40 TCGA-CK-6746-01 19 43763063 43763063 T A PSG9 Missense_Mutation p.I312L 0.38 tolerated(0.27) possibly_damaging(0.633) TCGA-CK-6746-01 19 43858428 43858428 A G CD177 Missense_Mutation p.E88G 0.11 deleterious(0.02) possibly_damaging(0.723) TCGA-CK-6746-01 19 44222998 44222998 G A IRGC Silent p.P96P 0.30 TCGA-CK-6746-01 19 44423849 44423849 C A ZNF45 Missense_Mutation p.E6D 0.33 deleterious(0.02) benign(0.174) TCGA-CK-6746-01 19 44777196 44777196 G A ZNF233 Missense_Mutation p.G128D 0.32 tolerated(0.17) possibly_damaging(0.737) TCGA-CK-6746-01 19 4538453 4538453 G - LRG1 Frame_Shift_Del p.L183Cfs*26 0.50 TCGA-CK-6746-01 19 45901284 45901284 C T PPP1R13L Silent p.P59P 0.50 TCGA-CK-6746-01 19 46417890 46417890 G A NANOS2 Missense_Mutation p.A21V 0.36 deleterious(0.02) benign(0.057) TCGA-CK-6746-01 19 4652876 4652876 C - TNFAIP8L1 3'UTR 0.31 TCGA-CK-6746-01 19 46842953 46842953 G A HIF3A 3'UTR 0.36 TCGA-CK-6746-01 19 4793681 4793681 C A FEM1A Silent p.A605A 0.40 TCGA-CK-6746-01 19 4793720 4793720 C T FEM1A Silent p.Y618Y 0.32 TCGA-CK-6746-01 19 48229101 48229101 G A EHD2 Missense_Mutation p.A179T 0.47 deleterious(0) probably_damaging(0.975) TCGA-CK-6746-01 19 48337709 48337709 G A TPRX2P Silent p.A3A 0.33 TCGA-CK-6746-01 19 4902846 4902846 G - ARRDC5 Frame_Shift_Del p.Q12Nfs*7 0.29 TCGA-CK-6746-01 19 49110206 49110206 C T SPACA4 5'UTR 0.44 TCGA-CK-6746-01 19 49473097 49473097 G A GYS1 Missense_Mutation p.R609C 0.40 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 19 49502604 49502604 G A RUVBL2 Missense_Mutation p.R14H 0.29 deleterious(0.05) benign(0.066) TCGA-CK-6746-01 19 49539504 49539504 C T CGB1 Silent p.P22P 0.38 TCGA-CK-6746-01 19 49633844 49633844 C T PPFIA3 Silent p.R289R 0.50 TCGA-CK-6746-01 19 49657465 49657465 T G HRC Silent p.R344R 0.44 TCGA-CK-6746-01 19 50158042 50158042 C - SCAF1 Frame_Shift_Del p.T1181Pfs*28 0.33 TCGA-CK-6746-01 19 50270335 50270336 - C AP2A1 5'Flank 0.50 TCGA-CK-6746-01 19 50831885 50831885 C T KCNC3 Missense_Mutation p.R152H 0.43 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 19 51172244 51172244 C - SHANK1 Frame_Shift_Del p.L993Cfs*350 0.38 TCGA-CK-6746-01 19 51207413 51207413 C T SHANK1 Missense_Mutation p.G396R 0.35 probably_damaging(0.998) TCGA-CK-6746-01 19 51359498 51359498 G A KLK3 Missense_Mutation p.A17T 0.42 tolerated(0.06) possibly_damaging(0.456) TCGA-CK-6746-01 19 51499443 51499443 C T KLK8 Missense_Mutation p.D264N 0.39 tolerated(1) benign(0.001) TCGA-CK-6746-01 19 51532681 51532682 - C KLK12 Frame_Shift_Ins p.V209Sfs*41 0.16 TCGA-CK-6746-01 19 51857909 51857909 G C ETFB 5'UTR 0.33 TCGA-CK-6746-01 19 51870355 51870355 A - CLDND2 3'UTR 0.27 TCGA-CK-6746-01 19 52273133 52273133 A G FPR2 3'UTR 0.46 TCGA-CK-6746-01 19 52394473 52394473 C T ZNF649 Missense_Mutation p.V306I 0.47 tolerated(1) benign(0.002) TCGA-CK-6746-01 19 53431733 53431733 T C ZNF321P 3'UTR 0.36 TCGA-CK-6746-01 19 53793538 53793538 A G BIRC8 Silent p.A30A 0.30 TCGA-CK-6746-01 19 53911828 53911828 G A ZNF765 Silent p.S340S 0.36 TCGA-CK-6746-01 19 53995179 53995179 C A ZNF813 Missense_Mutation p.H565N 0.30 tolerated(0.66) benign(0.011) TCGA-CK-6746-01 19 541589 541589 G T CDC34 3'UTR 0.42 TCGA-CK-6746-01 19 54409968 54409968 G A PRKCG Missense_Mutation p.R638H 0.45 deleterious(0) benign(0.01) TCGA-CK-6746-01 19 54757903 54757903 G - LILRB5 Frame_Shift_Del p.T446Rfs*16 0.34 TCGA-CK-6746-01 19 55143551 55143551 G A LILRB1 Missense_Mutation p.R175H 0.43 tolerated(0.58) benign(0) TCGA-CK-6746-01 19 55543693 55543693 G A GP6 Missense_Mutation p.R47W 0.36 tolerated_low_confidence(0.41) benign(0.027) TCGA-CK-6746-01 19 56009392 56009392 T C SSC5D Silent p.G511G 0.31 TCGA-CK-6746-01 19 56012424 56012424 C - SSC5D Frame_Shift_Del p.W883Gfs*40 0.31 TCGA-CK-6746-01 19 56154733 56154733 G A ZNF580 3'UTR 0.44 TCGA-CK-6746-01 19 56249722 56249722 A - NLRP9 Frame_Shift_Del p.S7Rfs*9 0.37 TCGA-CK-6746-01 19 57134989 57134989 G A ZNF71 3'UTR 0.31 TCGA-CK-6746-01 19 57176297 57176297 C T ZNF835 Silent p.P90P 0.41 TCGA-CK-6746-01 19 57286752 57286752 T - ZIM2 Frame_Shift_Del p.K296Nfs*7 0.28 TCGA-CK-6746-01 19 579603 579603 G - BSG Frame_Shift_Del p.G175Afs*4 0.40 TCGA-CK-6746-01 19 58868884 58868884 C - ZNF497 Frame_Shift_Del p.A40Pfs*148 0.41 TCGA-CK-6746-01 19 6368637 6368637 G T CLPP Missense_Mutation p.Q250H 0.38 tolerated(0.16) benign(0.005) TCGA-CK-6746-01 19 6454408 6454408 G T SLC25A23 Missense_Mutation p.L241M 0.40 tolerated(0.11) probably_damaging(1) TCGA-CK-6746-01 19 6496088 6496088 C - TUBB4A Frame_Shift_Del p.G141Vfs*24 0.28 TCGA-CK-6746-01 19 7081406 7081406 C T ZNF557 Silent p.L95L 0.41 TCGA-CK-6746-01 19 7509333 7509333 T C ARHGEF18 Missense_Mutation p.V347A 0.50 deleterious(0) possibly_damaging(0.903) TCGA-CK-6746-01 19 7534862 7534862 G A ARHGEF18 Missense_Mutation p.R1099H 0.51 tolerated(0.06) benign(0.176) TCGA-CK-6746-01 19 7927924 7927924 C T EVI5L Missense_Mutation p.R672W 0.59 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 19 8171075 8171075 C - FBN3 Frame_Shift_Del p.G1577Vfs*72 0.24 TCGA-CK-6746-01 19 8651739 8651739 T C ADAMTS10 Missense_Mutation p.I734V 0.47 tolerated(0.07) possibly_damaging(0.454) TCGA-CK-6746-01 19 9006705 9006705 C A MUC16 Missense_Mutation p.E13181D 0.49 probably_damaging(0.956) TCGA-CK-6746-01 19 9063170 9063170 G T MUC16 Silent p.T8092T 0.43 TCGA-CK-6746-01 19 9296750 9296750 T G OR7D2 Missense_Mutation p.L98R 0.41 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CK-6746-01 1 101004868 101004868 C T GPR88 Missense_Mutation p.R116W 0.32 deleterious(0.04) benign(0.05) TCGA-CK-6746-01 1 101006344 101006344 T - GPR88 3'UTR 0.76 TCGA-CK-6746-01 1 101342368 101342368 A - EXTL2 Frame_Shift_Del p.F162Lfs*14 0.29 TCGA-CK-6746-01 1 101705754 101705754 A - S1PR1 3'UTR 0.26 TCGA-CK-6746-01 1 102462497 102462497 C T OLFM3 5'UTR 0.42 TCGA-CK-6746-01 1 1026966 1026966 C T C1orf159 Intron 0.19 TCGA-CK-6746-01 1 103381226 103381226 T G COL11A1 Missense_Mutation p.E1259D 0.18 unknown(0) TCGA-CK-6746-01 1 10699572 10699572 C T CASZ1 Silent p.S1569S 0.51 TCGA-CK-6746-01 1 109795828 109795828 G - CELSR2 Frame_Shift_Del p.G1044Vfs*17 0.28 TCGA-CK-6746-01 1 109811737 109811737 C - CELSR2 Frame_Shift_Del p.V2215Wfs*26 0.28 TCGA-CK-6746-01 1 109824326 109824326 G A PSRC1 Missense_Mutation p.T145M 0.51 deleterious(0.02) benign(0.282) TCGA-CK-6746-01 1 110282526 110282526 G A GSTM3 Missense_Mutation p.A18V 0.50 deleterious(0.02) benign(0.111) TCGA-CK-6746-01 1 110740973 110740973 C T SLC6A17 Silent p.P697P 0.56 TCGA-CK-6746-01 1 11080584 11080584 C T TARDBP Silent p.Y214Y 0.38 TCGA-CK-6746-01 1 110884028 110884028 C T RBM15 Silent p.C667C 0.14 TCGA-CK-6746-01 1 11115054 11115054 G A SRM Missense_Mutation p.R285C 0.26 deleterious(0.02) possibly_damaging(0.726) TCGA-CK-6746-01 1 1115643 1115643 G - TTLL10 Frame_Shift_Del p.G145Vfs*48 0.41 TCGA-CK-6746-01 1 113062997 113062997 C T WNT2B Nonsense_Mutation p.R348* 0.48 TCGA-CK-6746-01 1 114225038 114225038 A G MAGI3 Intron 0.29 TCGA-CK-6746-01 1 114523002 114523002 C A OLFML3 Missense_Mutation p.L55M 0.42 tolerated(0.21) possibly_damaging(0.803) TCGA-CK-6746-01 1 1146888 1146888 C T TNFRSF4 3'UTR 0.29 TCGA-CK-6746-01 1 115006077 115006077 T A TRIM33 Missense_Mutation p.K249N 0.38 deleterious(0) probably_damaging(0.996) TCGA-CK-6746-01 1 116574405 116574405 G A SLC22A15 Intron 0.67 TCGA-CK-6746-01 1 116948764 116948764 G A ATP1A1 3'Flank 0.47 TCGA-CK-6746-01 1 117297533 117297533 A - CD2 Frame_Shift_Del p.N116Mfs*9 0.14 TCGA-CK-6746-01 1 117619329 117619329 C A TTF2 Missense_Mutation p.P486H 0.34 deleterious(0.01) probably_damaging(0.95) TCGA-CK-6746-01 1 11844426 11844426 G A C1orf167 Silent p.G1091G 0.54 TCGA-CK-6746-01 1 11848268 11848268 C T C1orf167 Missense_Mutation p.A1328V 0.45 tolerated_low_confidence(0.1) unknown(0) TCGA-CK-6746-01 1 11918799 11918799 C A NPPB Missense_Mutation p.S31I 0.44 deleterious(0.05) possibly_damaging(0.862) TCGA-CK-6746-01 1 12172072 12172072 G A TNFRSF8 Splice_Site p.X265_splice 0.29 TCGA-CK-6746-01 1 1249359 1249359 G T CPSF3L Intron 0.50 TCGA-CK-6746-01 1 145473404 145473404 G A ANKRD34A Missense_Mutation p.E26K 0.51 deleterious(0) probably_damaging(0.925) TCGA-CK-6746-01 1 147380572 147380572 G A GJA8 Missense_Mutation p.G164S 0.36 deleterious(0.01) possibly_damaging(0.897) TCGA-CK-6746-01 1 1477403 1477405 AAC - SSU72 3'UTR 0.47 TCGA-CK-6746-01 1 149399179 149399179 T - HIST2H3PS2 3'Flank 0.30 TCGA-CK-6746-01 1 149901545 149901545 G C MTMR11 Silent p.R637R 0.33 TCGA-CK-6746-01 1 150259073 150259073 G A C1orf51 Missense_Mutation p.G289S 0.42 tolerated(1) benign(0.007) TCGA-CK-6746-01 1 151239942 151239942 T - PSMD4 3'UTR 0.25 TCGA-CK-6746-01 1 151372199 151372199 A G PSMB4 Missense_Mutation p.T46A 0.09 tolerated(0.06) benign(0.285) TCGA-CK-6746-01 1 152884136 152884136 A G IVL 3'UTR 0.32 TCGA-CK-6746-01 1 153234342 153234342 C T LOR Missense_Mutation p.A306V 0.46 unknown(0) TCGA-CK-6746-01 1 153317811 153317811 C - PGLYRP4 Frame_Shift_Del p.A63Qfs*10 0.48 TCGA-CK-6746-01 1 153745703 153745703 G A INTS3 Missense_Mutation p.R1029Q 0.48 deleterious(0.03) probably_damaging(0.947) TCGA-CK-6746-01 1 153916828 153916829 - G DENND4B Frame_Shift_Ins p.R8Pfs*20 0.27 TCGA-CK-6746-01 1 154932027 154932028 - G PYGO2 Frame_Shift_Ins p.Q150Pfs*27 0.25 TCGA-CK-6746-01 1 156281937 156281938 - A CCT3 Frame_Shift_Ins p.L350Ffs*9 0.30 TCGA-CK-6746-01 1 156593277 156593277 C A HAPLN2 5'UTR 0.71 TCGA-CK-6746-01 1 1573145 1573145 A G CDK11B Silent p.H484H 0.45 TCGA-CK-6746-01 1 158908882 158908882 C A PYHIN1 Missense_Mutation p.P142T 0.41 tolerated(0.85) benign(0.003) TCGA-CK-6746-01 1 160313199 160313199 G - NCSTN Frame_Shift_Del p.G6Vfs*22 0.19 TCGA-CK-6746-01 1 160341838 160341838 C - NHLH1 3'UTR 0.31 TCGA-CK-6746-01 1 161696644 161696644 G A FCRLB Silent p.A242A 0.48 TCGA-CK-6746-01 1 16259831 16259831 A T SPEN Missense_Mutation p.S2366C 0.45 possibly_damaging(0.838) TCGA-CK-6746-01 1 162767818 162767818 G A HSD17B7 Intron 0.08 TCGA-CK-6746-01 1 165797061 165797061 G A UCK2 5'UTR 0.50 TCGA-CK-6746-01 1 167024259 167024259 A G GPA33 Missense_Mutation p.C261R 0.18 deleterious(0) probably_damaging(0.959) TCGA-CK-6746-01 1 16757837 16757837 C T SPATA21 Silent p.T10T 0.46 TCGA-CK-6746-01 1 168034884 168034884 C T DCAF6 Silent p.G832G 0.34 TCGA-CK-6746-01 1 169672559 169672559 T C SELL Silent p.S276S 0.60 TCGA-CK-6746-01 1 171483755 171483755 C T PRRC2C Missense_Mutation p.A122V 0.51 unknown(0) TCGA-CK-6746-01 1 172579428 172579428 T - SUCO 3'UTR 0.34 TCGA-CK-6746-01 1 173794447 173794447 G A DARS2 Missense_Mutation p.G27D 0.43 tolerated_low_confidence(0.1) benign(0.101) TCGA-CK-6746-01 1 173951863 173951863 A G RC3H1 Splice_Site p.X256_splice 0.41 TCGA-CK-6746-01 1 176833589 176833589 G A ASTN1 Missense_Mutation p.P1239L 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.805) TCGA-CK-6746-01 1 176913047 176913047 G T ASTN1 Missense_Mutation p.P786H 0.31 deleterious(0) probably_damaging(0.996) TCGA-CK-6746-01 1 180056748 180056748 G A CEP350 Silent p.E2107E 0.45 TCGA-CK-6746-01 1 180163460 180163460 G - QSOX1 Frame_Shift_Del p.S469Vfs*117 0.32 TCGA-CK-6746-01 1 180165406 180165406 G A QSOX1 Missense_Mutation p.S493N 0.33 deleterious(0) possibly_damaging(0.611) TCGA-CK-6746-01 1 181620472 181620472 A G CACNA1E Splice_Site p.X318_splice 0.48 TCGA-CK-6746-01 1 181701953 181701953 C T CACNA1E Missense_Mutation p.R911W 0.44 deleterious(0) possibly_damaging(0.689) TCGA-CK-6746-01 1 184764561 184764561 C T FAM129A Silent p.E779E 0.43 TCGA-CK-6746-01 1 185932981 185932981 T C HMCN1 Silent p.S684S 0.45 TCGA-CK-6746-01 1 186008859 186008859 G T HMCN1 Splice_Site p.X2010_splice 0.34 TCGA-CK-6746-01 1 19175891 19175891 G - TAS1R2 Frame_Shift_Del p.L471Cfs*5 0.29 TCGA-CK-6746-01 1 19504046 19504046 C T UBR4 Missense_Mutation p.R849H 0.37 benign(0.002) TCGA-CK-6746-01 1 196887674 196887674 C T CFHR4 3'UTR 0.39 TCGA-CK-6746-01 1 200587486 200587486 T C KIF14 Silent p.Q122Q 0.46 TCGA-CK-6746-01 1 200969620 200969620 C - KIF21B Frame_Shift_Del p.G528Afs*13 0.30 TCGA-CK-6746-01 1 201046128 201046128 C A CACNA1S Missense_Mutation p.G583W 0.41 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 1 201779774 201779774 C T NAV1 Missense_Mutation p.T1562M 0.54 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 1 202205114 202205114 C T LGR6 Nonsense_Mutation p.Q141* 0.35 TCGA-CK-6746-01 1 203008246 203008246 G A PPFIA4 Missense_Mutation p.R37Q 0.29 deleterious(0) probably_damaging(0.986) TCGA-CK-6746-01 1 203144870 203144870 T - MYBPH Frame_Shift_Del p.N5Tfs*73 0.38 TCGA-CK-6746-01 1 20411358 20411358 C T PLA2G5 Missense_Mutation p.A12V 0.44 tolerated(0.26) benign(0.002) TCGA-CK-6746-01 1 204426878 204426878 C T PIK3C2B Missense_Mutation p.R564H 0.51 tolerated(0.06) probably_damaging(0.998) TCGA-CK-6746-01 1 205687376 205687376 T A NUCKS1 3'UTR 0.41 TCGA-CK-6746-01 1 205890864 205890864 G T SLC26A9 Missense_Mutation p.P629T 0.38 tolerated(0.1) benign(0.068) TCGA-CK-6746-01 1 206239364 206239364 A - C1orf186 3'UTR 0.33 TCGA-CK-6746-01 1 206320253 206320253 T C CTSE Silent p.G132G 0.39 TCGA-CK-6746-01 1 206944293 206944293 C T IL10 Missense_Mutation p.G113R 0.46 deleterious(0) probably_damaging(0.997) TCGA-CK-6746-01 1 207133936 207133936 C T FCAMR Missense_Mutation p.G429R 0.43 deleterious_low_confidence(0.02) unknown(0) TCGA-CK-6746-01 1 207751319 207751319 C T CR1 Silent p.D1569D 0.44 TCGA-CK-6746-01 1 207867715 207867715 C - CR1L Frame_Shift_Del p.T163Pfs*21 0.26 TCGA-CK-6746-01 1 208390774 208390774 G A PLXNA2 Missense_Mutation p.T165M 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-CK-6746-01 1 21031103 21031103 A G KIF17 Silent p.D320D 0.36 TCGA-CK-6746-01 1 210407341 210407341 A T SERTAD4 Intron 0.28 TCGA-CK-6746-01 1 2115951 2115951 C T PRKCZ Intron 0.30 TCGA-CK-6746-01 1 212870364 212870364 T - BATF3 Frame_Shift_Del p.N45Tfs*40 0.40 TCGA-CK-6746-01 1 213290710 213290710 T G RPS6KC1 Missense_Mutation p.S144A 0.32 tolerated(0.22) benign(0.003) TCGA-CK-6746-01 1 214492309 214492309 G A SMYD2 Missense_Mutation p.V173I 0.38 tolerated(0.28) benign(0.315) TCGA-CK-6746-01 1 217783494 217783494 G T GPATCH2 Intron 0.30 TCGA-CK-6746-01 1 21894605 21894605 G - ALPL Frame_Shift_Del p.G221Vfs*56 0.31 TCGA-CK-6746-01 1 220203772 220203772 C T EPRS Silent p.A193A 0.41 TCGA-CK-6746-01 1 221053550 221053550 C T HLX Silent p.A117A 0.33 TCGA-CK-6746-01 1 221053583 221053583 G A HLX Silent p.Q128Q 0.53 TCGA-CK-6746-01 1 22151329 22151329 G A LDLRAD2 3'UTR 0.33 TCGA-CK-6746-01 1 222843125 222843125 T - AIDA 3'UTR 0.45 TCGA-CK-6746-01 1 22456175 22456175 G A WNT4 Missense_Mutation p.R83W 0.33 deleterious(0) probably_damaging(0.954) TCGA-CK-6746-01 1 226058810 226058810 A G TMEM63A Missense_Mutation p.C113R 0.40 deleterious(0.02) possibly_damaging(0.663) TCGA-CK-6746-01 1 228452073 228452073 C T OBSCN Silent p.S1798S 0.43 TCGA-CK-6746-01 1 228681589 228681589 G A RNF187 3'UTR 0.38 TCGA-CK-6746-01 1 229667437 229667437 C T ABCB10 Missense_Mutation p.A461T 0.42 deleterious(0.01) possibly_damaging(0.601) TCGA-CK-6746-01 1 230384963 230384963 A G GALNT2 Missense_Mutation p.Y284C 0.40 tolerated(0.15) probably_damaging(0.998) TCGA-CK-6746-01 1 231298990 231298990 C T TRIM67 Missense_Mutation p.A92V 0.47 tolerated(0.21) benign(0.173) TCGA-CK-6746-01 1 232581285 232581285 C T SIPA1L2 Missense_Mutation p.D1115N 0.32 tolerated(0.26) probably_damaging(0.999) TCGA-CK-6746-01 1 236849958 236849958 C T ACTN2 5'UTR 0.22 TCGA-CK-6746-01 1 23767947 23767947 T C ASAP3 Missense_Mutation p.D256G 0.38 deleterious(0.05) benign(0) TCGA-CK-6746-01 1 237777627 237777627 G A RYR2 Silent p.T1733T 0.42 TCGA-CK-6746-01 1 24077402 24077402 C T TCEB3 Nonsense_Mutation p.Q129* 0.49 TCGA-CK-6746-01 1 241761094 241761094 G A OPN3 Missense_Mutation p.S300L 0.41 deleterious(0.02) possibly_damaging(0.692) TCGA-CK-6746-01 1 241767713 241767713 A G OPN3 Missense_Mutation p.L181P 0.39 tolerated(0.11) benign(0.241) TCGA-CK-6746-01 1 242016709 242016709 A - EXO1 Frame_Shift_Del p.V112Sfs*22 0.38 TCGA-CK-6746-01 1 243319523 243319523 C A CEP170 Missense_Mutation p.R1304M 0.40 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 1 24413248 24413248 C T MYOM3 Missense_Mutation p.V562I 0.40 tolerated(0.07) benign(0.137) TCGA-CK-6746-01 1 24661153 24661153 A G GRHL3 Missense_Mutation p.I75V 0.42 tolerated(0.24) benign(0.007) TCGA-CK-6746-01 1 248366399 248366399 C T OR2M3 Silent p.S10S 0.42 TCGA-CK-6746-01 1 248367166 248367166 G A OR2M3 Missense_Mutation p.R266H 0.44 tolerated(0.95) benign(0.012) TCGA-CK-6746-01 1 249142492 249142492 G A ZNF672 Missense_Mutation p.R340H 0.25 tolerated(0.47) benign(0.012) TCGA-CK-6746-01 1 25569109 25569109 T - C1orf63 Frame_Shift_Del p.S282Vfs*20 0.29 TCGA-CK-6746-01 1 26310483 26310483 C T PAFAH2 Missense_Mutation p.R169H 0.49 deleterious(0.04) benign(0.024) TCGA-CK-6746-01 1 26514777 26514778 - C CNKSR1 Frame_Shift_Ins p.P506Tfs*9 0.39 TCGA-CK-6746-01 1 26529010 26529010 A - CATSPER4 Frame_Shift_Del p.K467Nfs*78 0.29 TCGA-CK-6746-01 1 32936657 32936657 G A ZBTB8B Silent p.A144A 0.75 TCGA-CK-6746-01 1 33087406 33087406 A - ZBTB8OS 3'UTR 0.32 TCGA-CK-6746-01 1 3321425 3321425 G A PRDM16 Missense_Mutation p.R336H 0.24 tolerated(0.43) benign(0.003) TCGA-CK-6746-01 1 34035125 34035125 C T CSMD2 Silent p.P2662P 0.41 TCGA-CK-6746-01 1 35365824 35365824 C A DLGAP3 Missense_Mutation p.E386D 0.14 tolerated(0.14) benign(0.352) TCGA-CK-6746-01 1 35452790 35452790 T - ZMYM6 Frame_Shift_Del p.N1298Ifs*9 0.12 TCGA-CK-6746-01 1 36381111 36381111 C T AGO1 Nonsense_Mutation p.R666* 0.38 TCGA-CK-6746-01 1 36643781 36643781 C - MAP7D1 Frame_Shift_Del p.A565Rfs*10 0.32 TCGA-CK-6746-01 1 38348533 38348533 T - INPP5B Frame_Shift_Del p.V460* 0.40 TCGA-CK-6746-01 1 39879371 39879371 T C KIAA0754 Missense_Mutation p.F1009S 0.31 benign(0.002) TCGA-CK-6746-01 1 39879379 39879379 C G KIAA0754 Missense_Mutation p.P1012A 0.33 benign(0.01) TCGA-CK-6746-01 1 43637193 43637193 T G EBNA1BP2 Missense_Mutation p.K149Q 0.36 tolerated(0.3) benign(0.026) TCGA-CK-6746-01 1 43787333 43787333 C - TIE1 Frame_Shift_Del p.F1100Lfs*8 0.36 TCGA-CK-6746-01 1 43900974 43900974 G A SZT2 Missense_Mutation p.R1946H 0.29 tolerated(0.06) probably_damaging(0.993) TCGA-CK-6746-01 1 43909340 43909340 C - SZT2 Frame_Shift_Del p.P2844Rfs*9 0.35 TCGA-CK-6746-01 1 44596372 44596372 C A KLF17 Missense_Mutation p.P372T 0.50 deleterious(0.01) possibly_damaging(0.598) TCGA-CK-6746-01 1 45162817 45162817 G T C1orf228 Missense_Mutation p.G84C 0.38 deleterious(0) probably_damaging(0.995) TCGA-CK-6746-01 1 45297987 45297987 G A PTCH2 Missense_Mutation p.H98Y 0.39 deleterious(0.01) benign(0.007) TCGA-CK-6746-01 1 46120973 46120973 C T GPBP1L1 Missense_Mutation p.E27K 0.38 tolerated(0.09) benign(0.063) TCGA-CK-6746-01 1 46743644 46743644 A G RAD54L Silent p.T675T 0.10 TCGA-CK-6746-01 1 47906210 47906210 G T FOXD2 3'UTR 0.38 TCGA-CK-6746-01 1 50884382 50884382 G A DMRTA2 Silent p.G528G 0.34 TCGA-CK-6746-01 1 52299794 52299794 G T NRD1 Missense_Mutation p.A322D 0.44 deleterious(0.03) benign(0.208) TCGA-CK-6746-01 1 54238057 54238057 C A NDC1 Missense_Mutation p.A636S 0.44 deleterious(0.05) probably_damaging(1) TCGA-CK-6746-01 1 63790253 63790253 G A FOXD3 3'UTR 0.62 TCGA-CK-6746-01 1 65344791 65344791 G A JAK1 Silent p.D82D 0.55 TCGA-CK-6746-01 1 65614071 65614071 C - AK4 5'UTR 0.32 TCGA-CK-6746-01 1 67452235 67452235 A G MIER1 3'Flank 0.36 TCGA-CK-6746-01 1 71513157 71513157 C - PTGER3 Frame_Shift_Del p.G35Afs*101 0.40 TCGA-CK-6746-01 1 74663930 74663930 G A FPGT 5'UTR 0.41 TCGA-CK-6746-01 1 75072306 75072306 G A C1orf173 Nonsense_Mutation p.Q490* 0.46 TCGA-CK-6746-01 1 77779561 77779561 C T AK5 Intron 0.39 TCGA-CK-6746-01 1 78162897 78162897 A - USP33 3'UTR 0.37 TCGA-CK-6746-01 1 85589820 85589820 C T WDR63 Silent p.S666S 0.45 TCGA-CK-6746-01 1 86909468 86909468 A C CLCA2 Splice_Site p.X497_splice 0.39 TCGA-CK-6746-01 1 905686 905686 A G PLEKHN1 Silent p.E71E 0.56 TCGA-CK-6746-01 1 91180169 91180169 A G BARHL2 Missense_Mutation p.L257P 0.46 deleterious(0) unknown(0) TCGA-CK-6746-01 1 91182288 91182288 C T BARHL2 Silent p.A155A 0.46 TCGA-CK-6746-01 1 92327109 92327109 G A TGFBR3 5'UTR 0.46 TCGA-CK-6746-01 1 93170166 93170167 - C EVI5 Frame_Shift_Ins p.R140Kfs*4 0.29 TCGA-CK-6746-01 1 94018134 94018134 C T FNBP1L 3'UTR 0.29 TCGA-CK-6746-01 1 94342648 94342648 G A DNTTIP2 Silent p.H281H 0.40 TCGA-CK-6746-01 1 99730158 99730158 G A LPPR4 Silent p.A51A 0.39 TCGA-CK-6746-01 20 10026295 10026295 A G ANKEF1 Missense_Mutation p.Y257C 0.39 deleterious(0) probably_damaging(0.975) TCGA-CK-6746-01 20 11903885 11903885 G A BTBD3 Silent p.S380S 0.54 TCGA-CK-6746-01 20 1281257 1281257 G A SNPH Silent p.P70P 0.37 TCGA-CK-6746-01 20 1293238 1293238 G A SDCBP2 Missense_Mutation p.R185W 0.54 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 20 1349869 1349869 T C FKBP1A 3'UTR 0.41 TCGA-CK-6746-01 20 18460767 18460767 T A POLR3F Missense_Mutation p.F172Y 0.46 deleterious(0) probably_damaging(0.974) TCGA-CK-6746-01 20 1903041 1903041 C - SIRPA Frame_Shift_Del p.Q281Rfs*5 0.38 TCGA-CK-6746-01 20 21142783 21142783 G A RP4-777D9.2 Intron 0.49 TCGA-CK-6746-01 20 22563153 22563153 G A FOXA2 Missense_Mutation p.P243S 0.45 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 20 23016388 23016388 G A SSTR4 Missense_Mutation p.A90T 0.43 deleterious(0) probably_damaging(0.996) TCGA-CK-6746-01 20 23065529 23065529 G A CD93 Missense_Mutation p.P434L 0.36 tolerated(0.26) benign(0.007) TCGA-CK-6746-01 20 23065886 23065887 - C CD93 Frame_Shift_Ins p.A315Gfs*34 0.29 TCGA-CK-6746-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.47 TCGA-CK-6746-01 20 23358022 23358022 G A NAPB Silent p.D296D 0.38 TCGA-CK-6746-01 20 2378640 2378640 A G TGM6 Missense_Mutation p.D207G 0.39 deleterious(0) possibly_damaging(0.78) TCGA-CK-6746-01 20 25755829 25755829 C T FAM182B Missense_Mutation p.G43R 0.32 deleterious_low_confidence(0.02) benign(0.06) TCGA-CK-6746-01 20 2775057 2775057 G A CPXM1 Missense_Mutation p.R662C 0.56 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 20 30789952 30789952 G - PLAGL2 Frame_Shift_Del p.W11Gfs*15 0.28 TCGA-CK-6746-01 20 3190125 3190125 C T ITPA 5'UTR 0.33 TCGA-CK-6746-01 20 32298545 32298545 A G PXMP4 Missense_Mutation p.L64P 0.08 deleterious(0.01) probably_damaging(0.979) TCGA-CK-6746-01 20 34459027 34459027 C T PHF20 Missense_Mutation p.T358M 0.36 tolerated(0.07) benign(0.27) TCGA-CK-6746-01 20 35090854 35090855 - C DLGAP4 Intron 0.39 TCGA-CK-6746-01 20 36361416 36361416 A - CTNNBL1 Frame_Shift_Del p.R58Gfs*25 0.41 TCGA-CK-6746-01 20 36854123 36854123 C T KIAA1755 Missense_Mutation p.A705T 0.42 tolerated(0.59) benign(0.005) TCGA-CK-6746-01 20 36874363 36874363 G A KIAA1755 Missense_Mutation p.R57C 0.59 deleterious(0) probably_damaging(0.996) TCGA-CK-6746-01 20 3732230 3732230 C T HSPA12B Missense_Mutation p.A493V 0.42 deleterious(0.02) benign(0.063) TCGA-CK-6746-01 20 4163028 4163028 G - SMOX Frame_Shift_Del p.G303Afs*20 0.41 TCGA-CK-6746-01 20 42747218 42747218 G T JPH2 Silent p.A405A 0.58 TCGA-CK-6746-01 20 43030068 43030068 T C HNF4A Missense_Mutation p.L19P 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 20 43057044 43057044 C T HNF4A Missense_Mutation p.T400I 0.48 tolerated(0.26) benign(0.372) TCGA-CK-6746-01 20 43248438 43248438 T C ADA 3'UTR 0.47 TCGA-CK-6746-01 20 43254247 43254247 C A ADA Missense_Mutation p.K147N 0.43 tolerated(0.06) probably_damaging(0.994) TCGA-CK-6746-01 20 45228659 45228659 C T SLC13A3 Missense_Mutation p.G187S 0.27 tolerated(0.45) benign(0.023) TCGA-CK-6746-01 20 48522354 48522354 C A SPATA2 Silent p.T455T 0.47 TCGA-CK-6746-01 20 5170424 5170424 G A CDS2 Missense_Mutation p.R382H 0.31 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 20 51870983 51870983 G A TSHZ2 Missense_Mutation p.R329Q 0.40 tolerated(0.45) probably_damaging(0.996) TCGA-CK-6746-01 20 52835704 52835704 T - PFDN4 3'UTR 0.27 TCGA-CK-6746-01 20 55020983 55020983 C T CASS4 Missense_Mutation p.R163W 0.50 tolerated(0.13) benign(0.032) TCGA-CK-6746-01 20 57767574 57767574 C T ZNF831 Silent p.P500P 0.58 TCGA-CK-6746-01 20 6022133 6022133 C A LRRN4 Missense_Mutation p.Q586H 0.46 deleterious(0.01) probably_damaging(0.99) TCGA-CK-6746-01 20 60318817 60318817 A G CDH4 Missense_Mutation p.Q123R 0.39 tolerated(0.49) benign(0.001) TCGA-CK-6746-01 20 60886002 60886002 G A LAMA5 Missense_Mutation p.R3413C 0.67 probably_damaging(0.953) TCGA-CK-6746-01 20 60909019 60909019 G C LAMA5 Missense_Mutation p.A939G 0.37 benign(0.014) TCGA-CK-6746-01 20 61299837 61299837 G A SLCO4A1 Missense_Mutation p.R607H 0.32 tolerated(0.64) benign(0.259) TCGA-CK-6746-01 20 61526171 61526171 C A DIDO1 Silent p.S809S 0.38 TCGA-CK-6746-01 20 62202172 62202172 G - HELZ2 Frame_Shift_Del p.Q110Rfs*61 0.46 TCGA-CK-6746-01 20 62614420 62614420 G A PRPF6 Missense_Mutation p.R31Q 0.38 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 20 8000106 8000106 T A TMX4 Missense_Mutation p.E52V 0.50 deleterious(0) possibly_damaging(0.491) TCGA-CK-6746-01 20 944627 944627 C A RSPO4 Missense_Mutation p.Q182H 0.44 deleterious(0.02) possibly_damaging(0.735) TCGA-CK-6746-01 21 10862788 10862788 T C IGHV1OR21-1 Silent p.A28A 0.13 TCGA-CK-6746-01 21 26969716 26969716 C T MRPL39 Missense_Mutation p.R200H 0.50 tolerated(0.14) benign(0.031) TCGA-CK-6746-01 21 28338428 28338428 C T ADAMTS5 Missense_Mutation p.G95S 0.50 deleterious(0.02) benign(0.219) TCGA-CK-6746-01 21 31655277 31655277 T A KRTAP24-1 5'Flank 0.48 TCGA-CK-6746-01 21 31709871 31709871 C T KRTAP27-1 Missense_Mutation p.S39N 0.43 deleterious(0.01) probably_damaging(0.981) TCGA-CK-6746-01 21 33887521 33887521 C T EVA1C 3'UTR 0.49 TCGA-CK-6746-01 21 34962147 34962147 T - CRYZL1 Frame_Shift_Del p.K344Sfs*17 0.30 TCGA-CK-6746-01 21 43256664 43256664 C T PRDM15 Missense_Mutation p.G732R 0.37 tolerated(0.14) probably_damaging(0.947) TCGA-CK-6746-01 21 45095033 45095033 G - RRP1B Frame_Shift_Del p.K182Rfs*4 0.38 TCGA-CK-6746-01 21 45213247 45213247 A G RRP1 Missense_Mutation p.T108A 0.48 tolerated(0.4) benign(0.021) TCGA-CK-6746-01 21 45518390 45518390 T - TRAPPC10 Frame_Shift_Del p.S1109Rfs*41 0.30 TCGA-CK-6746-01 21 45753029 45753029 G A C21orf2 Missense_Mutation p.P87L 0.34 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 21 45821590 45821590 C - TRPM2 Frame_Shift_Del p.A785Rfs*17 0.49 TCGA-CK-6746-01 21 47855865 47855865 C T PCNT Missense_Mutation p.L2934F 0.38 possibly_damaging(0.86) TCGA-CK-6746-01 21 47952044 47952044 C T DIP2A Missense_Mutation p.A400V 0.43 deleterious(0) possibly_damaging(0.788) TCGA-CK-6746-01 22 17073538 17073538 G A CCT8L2 5'UTR 0.41 TCGA-CK-6746-01 22 17488851 17488852 - G GAB4 Frame_Shift_Ins p.E52Rfs*22 0.09 TCGA-CK-6746-01 22 18028564 18028564 A G CECR2 Missense_Mutation p.H1175R 0.33 deleterious(0.04) possibly_damaging(0.833) TCGA-CK-6746-01 22 20128210 20128210 T G ZDHHC8 Missense_Mutation p.L244R 0.28 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 22 20129050 20129050 G A ZDHHC8 Silent p.E374E 0.43 TCGA-CK-6746-01 22 20800824 20800824 C T KLHL22 Missense_Mutation p.R482Q 0.50 tolerated(0.48) possibly_damaging(0.489) TCGA-CK-6746-01 22 21159321 21159321 C T PI4KA Missense_Mutation p.R434H 0.52 tolerated(0.24) benign(0.019) TCGA-CK-6746-01 22 22989462 22989462 C T GGTLC2 Missense_Mutation p.P105L 0.07 deleterious(0) probably_damaging(0.99) TCGA-CK-6746-01 22 23154572 23154572 A - IGLV3-10 Frame_Shift_Del p.K49Nfs*43 0.31 TCGA-CK-6746-01 22 23438222 23438222 G A GNAZ Missense_Mutation p.A114T 0.29 tolerated(0.44) benign(0.024) TCGA-CK-6746-01 22 23742495 23742495 G - ZDHHC8P1 RNA 0.46 TCGA-CK-6746-01 22 24300567 24300567 G A GSTT2B Nonsense_Mutation p.Q144* 0.17 TCGA-CK-6746-01 22 24325140 24325140 C T GSTT2 Nonsense_Mutation p.Q144* 0.22 TCGA-CK-6746-01 22 25251322 25251322 C T SGSM1 Silent p.D198D 0.50 TCGA-CK-6746-01 22 26164407 26164407 C - MYO18B Frame_Shift_Del p.P177Lfs*55 0.28 TCGA-CK-6746-01 22 26860750 26860750 C T HPS4 Silent p.Q282Q 0.50 TCGA-CK-6746-01 22 26887929 26887929 T C TFIP11 3'UTR 0.24 TCGA-CK-6746-01 22 28394729 28394729 C T TTC28 Missense_Mutation p.A1640T 0.48 tolerated(0.14) benign(0.398) TCGA-CK-6746-01 22 29747204 29747204 G A AP1B1 Missense_Mutation p.R371W 0.41 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 22 30067929 30067929 G A NF2 Missense_Mutation p.E372K 0.46 tolerated(0.11) possibly_damaging(0.801) TCGA-CK-6746-01 22 30127250 30127250 C T ZMAT5 Silent p.G159G 0.35 TCGA-CK-6746-01 22 31330862 31330862 A G MORC2 Missense_Mutation p.L638P 0.37 tolerated(0.25) benign(0.001) TCGA-CK-6746-01 22 31663860 31663860 G - LIMK2 Frame_Shift_Del p.G390Afs*3 0.35 TCGA-CK-6746-01 22 32589332 32589332 C - RFPL2 Intron 0.24 TCGA-CK-6746-01 22 36680468 36680468 G A MYH9 Missense_Mutation p.A1858V 0.54 benign(0.012) TCGA-CK-6746-01 22 37524754 37524754 G A IL2RB Silent p.P346P 0.34 TCGA-CK-6746-01 22 38051335 38051335 C T SH3BP1 Missense_Mutation p.R584C 0.29 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 22 39117855 39117855 G A GTPBP1 Missense_Mutation p.A315T 0.35 tolerated(0.05) benign(0.3) TCGA-CK-6746-01 22 41633193 41633193 C T CHADL Missense_Mutation p.S628N 0.47 tolerated(0.06) possibly_damaging(0.477) TCGA-CK-6746-01 22 41928125 41928125 G - POLR3H Frame_Shift_Del p.P111Qfs*133 0.35 TCGA-CK-6746-01 22 42159305 42159306 AA - MEI1 Frame_Shift_Del p.K750Rfs*6 0.36 TCGA-CK-6746-01 22 42229248 42229248 G - SREBF2 5'UTR 0.38 TCGA-CK-6746-01 22 42276929 42276929 C T SREBF2 Silent p.D657D 0.67 TCGA-CK-6746-01 22 42473737 42473737 G A FAM109B Missense_Mutation p.R147H 0.59 tolerated(0.26) benign(0) TCGA-CK-6746-01 22 42606684 42606684 G A TCF20 Missense_Mutation p.P1543L 0.43 probably_damaging(0.999) TCGA-CK-6746-01 22 43559110 43559110 C T TSPO 3'UTR 0.33 TCGA-CK-6746-01 22 44282186 44282186 C T PNPLA5 Missense_Mutation p.A316T 0.50 tolerated(0.1) benign(0.139) TCGA-CK-6746-01 22 46688824 46688824 G A TTC38 3'UTR 0.32 TCGA-CK-6746-01 22 46751380 46751380 C A TRMU Missense_Mutation p.L305M 0.43 tolerated(0.13) possibly_damaging(0.728) TCGA-CK-6746-01 22 46930671 46930671 A G CELSR1 Silent p.S799S 0.29 TCGA-CK-6746-01 22 47189534 47189534 G A TBC1D22A Missense_Mutation p.A86T 0.47 tolerated(0.4) benign(0.02) TCGA-CK-6746-01 22 50480059 50480059 G A TTLL8 Missense_Mutation p.S310F 0.45 deleterious(0.02) possibly_damaging(0.707) TCGA-CK-6746-01 22 50718132 50718132 G A PLXNB2 Missense_Mutation p.A1439V 0.35 tolerated(0.1) probably_damaging(0.985) TCGA-CK-6746-01 22 50725686 50725686 A G PLXNB2 Missense_Mutation p.L539P 0.50 deleterious(0) probably_damaging(0.921) TCGA-CK-6746-01 22 51182582 51182582 A T ACR Missense_Mutation p.Q220L 0.45 tolerated(0.2) benign(0.043) TCGA-CK-6746-01 2 107084686 107084686 G - RGPD3 Frame_Shift_Del p.P20Rfs*70 0.34 TCGA-CK-6746-01 2 108443537 108443537 G A RGPD4 Missense_Mutation p.R23Q 0.46 tolerated(0.06) benign(0.238) TCGA-CK-6746-01 2 11053271 11053271 G A KCNF1 Missense_Mutation p.R240H 0.47 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 2 113342143 113342143 G T CHCHD5 5'UTR 0.50 TCGA-CK-6746-01 2 114399695 114399695 C - RABL2A Frame_Shift_Del p.H227Tfs*57 0.32 TCGA-CK-6746-01 2 116066917 116066917 C T DPP10 Missense_Mutation p.L59F 0.39 deleterious(0) possibly_damaging(0.82) TCGA-CK-6746-01 2 122104677 122104677 C A CLASP1 Silent p.V1489V 0.38 TCGA-CK-6746-01 2 128044352 128044352 G A ERCC3 Silent p.A423A 0.54 TCGA-CK-6746-01 2 128338344 128338344 G A MYO7B Missense_Mutation p.A343T 0.29 tolerated(0.16) benign(0.118) TCGA-CK-6746-01 2 128880779 128880779 G A UGGT1 Missense_Mutation p.V365M 0.51 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 2 130737757 130737757 C T RAB6C Silent p.S23S 0.23 TCGA-CK-6746-01 2 130948058 130948058 C T MZT2B Silent p.S112S 0.29 TCGA-CK-6746-01 2 130951624 130951624 C T TUBA3E Missense_Mutation p.R264H 0.22 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-CK-6746-01 2 132258806 132258806 G T AC093838.4 Intron 0.41 TCGA-CK-6746-01 2 133542056 133542056 T C NCKAP5 Silent p.P776P 0.30 TCGA-CK-6746-01 2 135012110 135012110 C A MGAT5 Missense_Mutation p.L46M 0.42 deleterious(0.02) probably_damaging(0.984) TCGA-CK-6746-01 2 135102586 135102586 G T MGAT5 Nonsense_Mutation p.G355* 0.45 TCGA-CK-6746-01 2 135870739 135870739 C T RAB3GAP1 Silent p.F127F 0.43 TCGA-CK-6746-01 2 138208414 138208414 G T THSD7B Splice_Site p.X987_splice 0.34 TCGA-CK-6746-01 2 144728299 144728299 A - GTDC1 Frame_Shift_Del p.F302Lfs*4 0.30 TCGA-CK-6746-01 2 145146475 145146475 G A ZEB2 3'UTR 0.31 TCGA-CK-6746-01 2 145156919 145156919 G A ZEB2 Missense_Mutation p.A612V 0.47 tolerated(0.13) probably_damaging(0.998) TCGA-CK-6746-01 2 157185029 157185029 T - NR4A2 Frame_Shift_Del p.N294Mfs*7 0.33 TCGA-CK-6746-01 2 157369956 157369956 T - GPD2 Frame_Shift_Del p.F204Sfs*10 0.29 TCGA-CK-6746-01 2 160092542 160092542 T C WDSUB1 3'UTR 0.34 TCGA-CK-6746-01 2 160176750 160176750 A - BAZ2B 3'UTR 0.30 TCGA-CK-6746-01 2 160289429 160289429 T C BAZ2B Missense_Mutation p.H580R 0.38 benign(0.227) TCGA-CK-6746-01 2 160806262 160806262 T C PLA2R1 Missense_Mutation p.D1189G 0.34 deleterious(0.01) probably_damaging(1) TCGA-CK-6746-01 2 162273090 162273091 - G TBR1 Frame_Shift_Ins p.M59Dfs*12 0.24 TCGA-CK-6746-01 2 166187864 166187864 G A SCN2A Missense_Mutation p.C725Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 2 166900484 166900484 G A SCN1A Nonsense_Mutation p.R580* 0.39 TCGA-CK-6746-01 2 167055821 167055821 C A SCN9A Missense_Mutation p.E1765D 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-CK-6746-01 2 167284442 167284442 G A SCN7A Silent p.R903R 0.52 TCGA-CK-6746-01 2 168099127 168099127 A G XIRP2 Missense_Mutation p.T409A 0.41 benign(0.384) TCGA-CK-6746-01 2 168099957 168099958 - G XIRP2 Frame_Shift_Ins p.D688Gfs*10 0.37 TCGA-CK-6746-01 2 168811911 168811911 G - STK39 3'UTR 0.39 TCGA-CK-6746-01 2 170806457 170806457 G A UBR3 Missense_Mutation p.A1143T 0.30 tolerated(0.09) possibly_damaging(0.787) TCGA-CK-6746-01 2 171699107 171699107 C A GAD1 Intron 0.46 TCGA-CK-6746-01 2 172584387 172584387 T C DYNC1I2 Silent p.G351G 0.45 TCGA-CK-6746-01 2 172641847 172641847 C T SLC25A12 Silent p.P658P 0.29 TCGA-CK-6746-01 2 173460603 173460603 C A PDK1 Missense_Mutation p.A406D 0.44 deleterious(0) benign(0.291) TCGA-CK-6746-01 2 175202074 175202074 A - AC018470.1 Frame_Shift_Del p.F26Lfs*36 0.30 TCGA-CK-6746-01 2 175436492 175436492 C T WIPF1 Silent p.P347P 0.35 TCGA-CK-6746-01 2 176804307 176804307 T C KIAA1715 Missense_Mutation p.Y262C 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-CK-6746-01 2 176965259 176965259 G - HOXD12 Frame_Shift_Del p.A197Rfs*43 0.41 TCGA-CK-6746-01 2 177134382 177134382 G A MTX2 Missense_Mutation p.V9I 0.38 tolerated(0.46) benign(0.001) TCGA-CK-6746-01 2 178416203 178416203 T C TTC30B Missense_Mutation p.Q430R 0.15 tolerated(0.1) possibly_damaging(0.806) TCGA-CK-6746-01 2 178482141 178482141 T C TTC30A Missense_Mutation p.Q430R 0.45 tolerated(0.1) possibly_damaging(0.806) TCGA-CK-6746-01 2 179412921 179412921 C G TTN Silent p.R31144R 0.38 TCGA-CK-6746-01 2 179414184 179414184 A G TTN Silent p.P30723P 0.36 TCGA-CK-6746-01 2 179569005 179569005 T C TTN Missense_Mutation p.Q10031R 0.42 TCGA-CK-6746-01 2 179600384 179600384 G - TTN Frame_Shift_Del p.P4930Qfs*13 0.28 TCGA-CK-6746-01 2 182784024 182784024 T G SSFA2 Missense_Mutation p.F999V 0.44 deleterious(0.05) benign(0.096) TCGA-CK-6746-01 2 186671356 186671356 C A FSIP2 Silent p.R5864R 0.37 TCGA-CK-6746-01 2 187529332 187529332 G A ITGAV Silent p.L679L 0.53 TCGA-CK-6746-01 2 187702258 187702258 T C ZSWIM2 Missense_Mutation p.H173R 0.38 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 2 190426661 190426661 G A SLC40A1 Silent p.C553C 0.47 TCGA-CK-6746-01 2 196673465 196673465 T G DNAH7 Missense_Mutation p.T3342P 0.35 deleterious(0.01) benign(0.116) TCGA-CK-6746-01 2 197183296 197183296 T C HECW2 Missense_Mutation p.Q773R 0.39 tolerated_low_confidence(0.58) benign(0) TCGA-CK-6746-01 2 198621152 198621152 C A BOLL Missense_Mutation p.E255D 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-CK-6746-01 2 198950701 198950701 G A PLCL1 Silent p.Q820Q 0.41 TCGA-CK-6746-01 2 202593907 202593907 C A ALS2 Splice_Site p.X861_splice 0.49 TCGA-CK-6746-01 2 203420398 203420398 A - BMPR2 Frame_Shift_Del p.E672Kfs*28 0.21 TCGA-CK-6746-01 2 203807653 203807653 A G CARF Missense_Mutation p.Y90C 0.49 tolerated_low_confidence(0.13) probably_damaging(0.982) TCGA-CK-6746-01 2 204599611 204599611 C T CD28 Silent p.R213R 0.47 TCGA-CK-6746-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.31 TCGA-CK-6746-01 2 206869193 206869193 G A INO80D Missense_Mutation p.P995S 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-6746-01 2 209165668 209165668 T C PIKFYVE Missense_Mutation p.V353A 0.26 tolerated(0.35) benign(0.003) TCGA-CK-6746-01 2 20990118 20990118 C A C2orf43 Missense_Mutation p.K65N 0.56 deleterious(0.01) probably_damaging(0.937) TCGA-CK-6746-01 2 210678444 210678444 G A UNC80 Missense_Mutation p.R360Q 0.40 possibly_damaging(0.785) TCGA-CK-6746-01 2 210690669 210690670 AA - UNC80 Frame_Shift_Del p.T791Nfs*17 0.35 TCGA-CK-6746-01 2 212426714 212426714 G - ERBB4 Frame_Shift_Del p.H801Mfs*27 0.30 TCGA-CK-6746-01 2 215855531 215855532 - T ABCA12 Frame_Shift_Ins p.N1173Kfs*27 0.20 TCGA-CK-6746-01 2 219001940 219001940 T - CXCR2 3'UTR 0.35 TCGA-CK-6746-01 2 219878613 219878613 C T CCDC108 Silent p.E1252E 0.51 TCGA-CK-6746-01 2 219894847 219894847 G A CCDC108 Silent p.I415I 0.44 TCGA-CK-6746-01 2 220104404 220104404 C T GLB1L Missense_Mutation p.V261I 0.40 tolerated(0.13) probably_damaging(0.923) TCGA-CK-6746-01 2 220173963 220173963 C - PTPRN Frame_Shift_Del p.G31Afs*75 0.38 TCGA-CK-6746-01 2 220379775 220379775 C T ASIC4 Missense_Mutation p.A237V 0.27 tolerated(0.28) benign(0.034) TCGA-CK-6746-01 2 226447384 226447384 G A NYAP2 Silent p.P417P 0.40 TCGA-CK-6746-01 2 227958986 227958986 C T COL4A4 Silent p.G408G 0.49 TCGA-CK-6746-01 2 231135316 231135316 C A SP140 Missense_Mutation p.A487E 0.42 tolerated(0.07) benign(0.129) TCGA-CK-6746-01 2 231988551 231988551 T - HTR2B 5'UTR 0.35 TCGA-CK-6746-01 2 234627977 234627977 T - UGT1A4 Frame_Shift_Del p.W173Gfs*8 0.31 TCGA-CK-6746-01 2 234669065 234669065 T C UGT1A8 Intron 0.42 TCGA-CK-6746-01 2 237150049 237150049 C T ASB18 Intron 0.45 TCGA-CK-6746-01 2 240066342 240066342 G - HDAC4 Frame_Shift_Del p.L268Cfs*13 0.37 TCGA-CK-6746-01 2 241569882 241569882 C A GPR35 Missense_Mutation p.N202K 0.53 tolerated(0.89) benign(0.004) TCGA-CK-6746-01 2 242066424 242066424 G T PASK Missense_Mutation p.L636I 0.46 tolerated(0.41) benign(0.005) TCGA-CK-6746-01 2 242135177 242135178 - C ANO7 Frame_Shift_Ins p.R131Pfs*17 0.39 TCGA-CK-6746-01 2 24538019 24538019 A G ITSN2 Missense_Mutation p.S36P 0.30 tolerated(0.06) possibly_damaging(0.86) TCGA-CK-6746-01 2 25966532 25966532 T C ASXL2 Missense_Mutation p.T892A 0.29 tolerated_low_confidence(0.09) benign(0.012) TCGA-CK-6746-01 2 26411005 26411005 G A GAREML Missense_Mutation p.R835H 0.48 deleterious(0) probably_damaging(0.988) TCGA-CK-6746-01 2 26477331 26477331 G A HADHB Missense_Mutation p.R33Q 0.39 tolerated(1) benign(0) TCGA-CK-6746-01 2 26534413 26534413 C - GPR113 Frame_Shift_Del p.G728Vfs*46 0.32 TCGA-CK-6746-01 2 26687845 26687845 G T OTOF Missense_Mutation p.R1618S 0.42 tolerated(0.18) benign(0.072) TCGA-CK-6746-01 2 26717864 26717864 G A OTOF Silent p.D281D 0.45 TCGA-CK-6746-01 2 27278919 27278919 C T AGBL5 Silent p.G426G 0.47 TCGA-CK-6746-01 2 27601437 27601437 G - ZNF513 Frame_Shift_Del p.T233Lfs*42 0.34 TCGA-CK-6746-01 2 27609130 27609130 C T PPM1G Silent p.L69L 0.28 TCGA-CK-6746-01 2 27664719 27664719 C A NRBP1 3'UTR 0.29 TCGA-CK-6746-01 2 27716933 27716933 C A FNDC4 Missense_Mutation p.W106C 0.42 deleterious(0) probably_damaging(0.994) TCGA-CK-6746-01 2 29416081 29416081 C T ALK 3'UTR 0.38 TCGA-CK-6746-01 2 37287829 37287829 G A HEATR5B Nonsense_Mutation p.R582* 0.35 TCGA-CK-6746-01 2 37600057 37600057 G A QPCT 3'UTR 0.44 TCGA-CK-6746-01 2 38960637 38960637 T C GALM Missense_Mutation p.F320S 0.36 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 2 42797601 42797601 C A MTA3 Missense_Mutation p.S18Y 0.47 deleterious(0) probably_damaging(0.994) TCGA-CK-6746-01 2 43452512 43452512 C - ZFP36L2 Frame_Shift_Del p.G144Afs*43 0.40 TCGA-CK-6746-01 2 46986630 46986630 A G SOCS5 Missense_Mutation p.N321D 0.35 tolerated(1) benign(0) TCGA-CK-6746-01 2 48573337 48573337 C T FOXN2 Intron 0.36 TCGA-CK-6746-01 2 55077276 55077276 G A EML6 Silent p.T455T 0.34 TCGA-CK-6746-01 2 60687881 60687881 C T BCL11A Silent p.T722T 0.59 TCGA-CK-6746-01 2 61391640 61391640 G A C2orf74 Missense_Mutation p.R188Q 0.43 tolerated(0.23) possibly_damaging(0.776) TCGA-CK-6746-01 2 61441511 61441511 T G USP34 Missense_Mutation p.E2789A 0.11 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 2 61571087 61571088 TT - USP34 Frame_Shift_Del p.N788Yfs*3 0.09 TCGA-CK-6746-01 2 62106067 62106067 T C CCT4 Silent p.R153R 0.51 TCGA-CK-6746-01 2 68365878 68365878 T - WDR92 Frame_Shift_Del p.N210Mfs*13 0.30 TCGA-CK-6746-01 2 68388869 68388869 A G PNO1 Missense_Mutation p.K138E 0.35 deleterious(0.03) benign(0.407) TCGA-CK-6746-01 2 68740729 68740729 C T APLF Missense_Mutation p.A180V 0.35 tolerated(0.15) benign(0.197) TCGA-CK-6746-01 2 70189046 70189046 A G ASPRV1 5'UTR 0.22 TCGA-CK-6746-01 2 72606909 72606909 G T EXOC6B Missense_Mutation p.L691I 0.22 tolerated(1) benign(0.009) TCGA-CK-6746-01 2 73800208 73800208 C T ALMS1 Missense_Mutation p.S3734L 0.46 possibly_damaging(0.614) TCGA-CK-6746-01 2 74274416 74274416 G A TET3 Missense_Mutation p.D323N 0.41 deleterious(0.05) possibly_damaging(0.88) TCGA-CK-6746-01 2 74642371 74642371 G A C2orf81 Silent p.D284D 0.41 TCGA-CK-6746-01 2 74690035 74690035 G - MOGS Frame_Shift_Del p.P294Lfs*11 0.45 TCGA-CK-6746-01 2 74720287 74720287 C A TTC31 Missense_Mutation p.P501H 0.39 deleterious_low_confidence(0) possibly_damaging(0.62) TCGA-CK-6746-01 2 74724933 74724933 A G LBX2 3'UTR 0.38 TCGA-CK-6746-01 2 74725184 74725184 G A LBX2 Missense_Mutation p.A152V 0.34 tolerated(0.06) possibly_damaging(0.557) TCGA-CK-6746-01 2 74733368 74733368 G A PCGF1 Missense_Mutation p.R122W 0.56 deleterious(0) probably_damaging(0.995) TCGA-CK-6746-01 2 74742892 74742892 G A TLX2 Missense_Mutation p.R178H 0.29 deleterious(0) probably_damaging(0.953) TCGA-CK-6746-01 2 77746785 77746785 G A LRRTM4 Silent p.F70F 0.42 TCGA-CK-6746-01 2 79384324 79384324 A C REG3A 3'UTR 0.29 TCGA-CK-6746-01 2 88396255 88396256 - A SMYD1 Frame_Shift_Ins p.L283Tfs*4 0.33 TCGA-CK-6746-01 2 8870951 8870951 G A KIDINS220 Missense_Mutation p.R1739C 0.35 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-CK-6746-01 2 90153792 90153792 A G IGKV3D-15 Silent p.P16P 0.38 TCGA-CK-6746-01 2 95541339 95541339 C T TEKT4 Missense_Mutation p.R315W 0.48 deleterious(0.04) benign(0.035) TCGA-CK-6746-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.35 TCGA-CK-6746-01 3 10085543 10085543 C T FANCD2 Missense_Mutation p.H377Y 0.23 deleterious(0) probably_damaging(0.96) TCGA-CK-6746-01 3 101477203 101477203 C T CEP97 Missense_Mutation p.R585C 0.47 deleterious(0.04) possibly_damaging(0.593) TCGA-CK-6746-01 3 11059568 11059568 C T SLC6A1 Missense_Mutation p.A93V 0.93 deleterious(0.03) probably_damaging(0.992) TCGA-CK-6746-01 3 111812209 111812209 T C C3orf52 Silent p.A47A 0.51 TCGA-CK-6746-01 3 112997630 112997630 C T BOC Missense_Mutation p.P605S 0.26 tolerated(0.32) benign(0.074) TCGA-CK-6746-01 3 114026988 114026988 G A TIGIT 3'UTR 0.52 TCGA-CK-6746-01 3 114069901 114069901 G T ZBTB20 Missense_Mutation p.Q342K 0.42 tolerated(0.09) possibly_damaging(0.678) TCGA-CK-6746-01 3 119325738 119325738 G T PLA1A Missense_Mutation p.G64V 0.31 deleterious(0) probably_damaging(0.995) TCGA-CK-6746-01 3 121712418 121712418 C A ILDR1 Missense_Mutation p.R393M 0.40 deleterious(0) possibly_damaging(0.897) TCGA-CK-6746-01 3 122340447 122340447 C T PARP15 Missense_Mutation p.A407V 0.48 deleterious(0.02) probably_damaging(0.927) TCGA-CK-6746-01 3 122667508 122667508 A G SEMA5B Missense_Mutation p.I112T 0.33 tolerated_low_confidence(0.93) benign(0) TCGA-CK-6746-01 3 124418864 124418864 G A AC080008.1 5'Flank 0.38 TCGA-CK-6746-01 3 125725778 125725778 C A SLC41A3 Intron 0.71 TCGA-CK-6746-01 3 127294815 127294815 A G TPRA1 Missense_Mutation p.F193L 0.46 tolerated(0.06) probably_damaging(0.998) TCGA-CK-6746-01 3 128628928 128628928 T C ACAD9 Missense_Mutation p.M543T 0.13 deleterious(0) probably_damaging(0.986) TCGA-CK-6746-01 3 128979226 128979226 G A COPG1 Missense_Mutation p.V308I 0.46 tolerated(0.26) benign(0.277) TCGA-CK-6746-01 3 129007702 129007702 A G HMCES Silent p.A63A 0.37 TCGA-CK-6746-01 3 13538268 13538268 C - HDAC11 Frame_Shift_Del p.V98Lfs*14 0.32 TCGA-CK-6746-01 3 141161679 141161679 A - ZBTB38 Frame_Shift_Del p.R152Gfs*34 0.32 TCGA-CK-6746-01 3 142503715 142503715 G A TRPC1 Missense_Mutation p.G377D 0.34 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 3 142567092 142567092 C T PCOLCE2 Missense_Mutation p.A139T 0.49 deleterious(0.02) possibly_damaging(0.891) TCGA-CK-6746-01 3 142681628 142681628 T C PAQR9 Missense_Mutation p.D184G 0.64 tolerated(0.25) probably_damaging(0.994) TCGA-CK-6746-01 3 145803118 145803118 A - PLOD2 Intron 0.10 TCGA-CK-6746-01 3 14724594 14724594 G A C3orf20 Missense_Mutation p.R125H 0.50 tolerated(0.61) benign(0.003) TCGA-CK-6746-01 3 149510064 149510064 C A ANKUB1 Missense_Mutation p.K30N 0.37 deleterious(0.04) benign(0.317) TCGA-CK-6746-01 3 149684096 149684097 - G PFN2 3'UTR 0.50 TCGA-CK-6746-01 3 150421525 150421525 T A FAM194A Missense_Mutation p.E54V 0.39 deleterious_low_confidence(0) benign(0.024) TCGA-CK-6746-01 3 150874030 150874030 C T MED12L Silent p.G213G 0.45 TCGA-CK-6746-01 3 150916948 150916948 C A GPR171 Missense_Mutation p.G76C 0.38 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 3 152150612 152150612 C A MBNL1 Missense_Mutation p.P151Q 0.44 tolerated(0.07) benign(0.277) TCGA-CK-6746-01 3 152881184 152881184 C - RAP2B 3'UTR 0.38 TCGA-CK-6746-01 3 152885982 152885983 - T RAP2B 3'UTR 0.33 TCGA-CK-6746-01 3 153840718 153840718 C T ARHGEF26 Missense_Mutation p.R313W 0.38 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 3 154855999 154855999 A G MME Missense_Mutation p.M277V 0.41 tolerated(0.42) benign(0.026) TCGA-CK-6746-01 3 155393927 155393927 A - PLCH1 5'Flank 0.30 TCGA-CK-6746-01 3 157823880 157823880 T - SHOX2 5'UTR 0.39 TCGA-CK-6746-01 3 158384147 158384147 T - GFM1 Frame_Shift_Del p.R526Efs*27 0.28 TCGA-CK-6746-01 3 167183365 167183365 T C SERPINI2 Missense_Mutation p.K192R 0.33 deleterious(0.05) benign(0.143) TCGA-CK-6746-01 3 167254660 167254660 G A WDR49 Missense_Mutation p.T299M 0.50 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 3 169569529 169569529 G A LRRC31 Missense_Mutation p.S346L 0.41 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 3 169637300 169637300 C A SAMD7 Missense_Mutation p.P5H 0.52 deleterious(0) probably_damaging(0.936) TCGA-CK-6746-01 3 169998104 169998104 T A PRKCI Nonsense_Mutation p.Y265* 0.06 TCGA-CK-6746-01 3 17053342 17053342 A G PLCL2 Missense_Mutation p.D709G 0.21 deleterious(0) probably_damaging(0.995) TCGA-CK-6746-01 3 180326332 180326332 T - TTC14 Intron 0.26 TCGA-CK-6746-01 3 183670977 183670977 C - ABCC5 Frame_Shift_Del p.G855Afs*14 0.31 TCGA-CK-6746-01 3 183908922 183908922 G T ABCF3 Missense_Mutation p.G483V 0.46 tolerated(0.33) benign(0.002) TCGA-CK-6746-01 3 184910529 184910529 T C EHHADH Missense_Mutation p.R553G 0.47 deleterious(0.01) probably_damaging(0.989) TCGA-CK-6746-01 3 186505659 186505659 A C EIF4A2 Missense_Mutation p.N356T 0.37 tolerated(0.2) benign(0.289) TCGA-CK-6746-01 3 186917775 186917775 T C RTP1 Missense_Mutation p.C237R 0.41 deleterious(0.04) benign(0.089) TCGA-CK-6746-01 3 186980391 186980391 G A MASP1 Missense_Mutation p.R119W 0.47 deleterious(0) probably_damaging(0.933) TCGA-CK-6746-01 3 190573537 190573538 - G GMNC Frame_Shift_Ins p.V185Cfs*15 0.15 TCGA-CK-6746-01 3 195016438 195016438 T C ACAP2 Silent p.S557S 0.47 TCGA-CK-6746-01 3 195451988 195451988 C A MUC20 Missense_Mutation p.L172M 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CK-6746-01 3 196281363 196281363 T C WDR53 Missense_Mutation p.T266A 0.41 tolerated(0.95) benign(0) TCGA-CK-6746-01 3 197500304 197500304 T C FYTTD1 Silent p.S176S 0.36 TCGA-CK-6746-01 3 197659161 197659161 G A IQCG Silent p.S176S 0.38 TCGA-CK-6746-01 3 25662278 25662278 C T TOP2B Silent p.T914T 0.38 TCGA-CK-6746-01 3 27763563 27763563 C G EOMES Missense_Mutation p.A75P 0.38 tolerated_low_confidence(0.12) benign(0) TCGA-CK-6746-01 3 30842430 30842430 C T GADL1 Missense_Mutation p.G401S 0.34 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 3 32031422 32031422 A G ZNF860 Missense_Mutation p.K284R 0.42 deleterious(0.03) benign(0.391) TCGA-CK-6746-01 3 35770855 35770855 T C ARPP21 Missense_Mutation p.L395P 0.67 deleterious(0.02) benign(0.005) TCGA-CK-6746-01 3 38050806 38050806 C T PLCD1 Silent p.A542A 0.62 TCGA-CK-6746-01 3 38622617 38622617 C T SCN5A Silent p.P1011P 0.92 TCGA-CK-6746-01 3 3886987 3886987 T - LRRN1 Frame_Shift_Del p.L222Wfs*44 0.28 TCGA-CK-6746-01 3 40085735 40085735 G T MYRIP Missense_Mutation p.W102L 0.44 deleterious(0) probably_damaging(0.997) TCGA-CK-6746-01 3 40528423 40528423 A G ZNF619 Missense_Mutation p.D181G 0.45 tolerated(0.19) benign(0.045) TCGA-CK-6746-01 3 40529053 40529053 A C ZNF619 Missense_Mutation p.K391T 0.43 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 3 42727230 42727230 C T KLHL40 Silent p.G40G 0.53 TCGA-CK-6746-01 3 42908364 42908372 AGATTGATT GATTGA ACKR2 3'UTR 0.16 TCGA-CK-6746-01 3 44542017 44542018 - C ZNF852 Frame_Shift_Ins p.T85Nfs*8 0.35 TCGA-CK-6746-01 3 44926849 44926849 C T TGM4 Nonsense_Mutation p.Q18* 0.51 TCGA-CK-6746-01 3 45266763 45266763 G A TMEM158 Missense_Mutation p.P253S 0.50 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CK-6746-01 3 46414533 46414533 G A CCR5 Missense_Mutation p.G47D 0.45 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 3 46449857 46449857 A G CCRL2 Missense_Mutation p.H108R 0.40 tolerated(0.06) possibly_damaging(0.645) TCGA-CK-6746-01 3 46937336 46937336 C T PTH1R Missense_Mutation p.A97V 0.39 tolerated(0.73) benign(0) TCGA-CK-6746-01 3 47912407 47912407 G - MAP4 Frame_Shift_Del p.R919Gfs*14 0.35 TCGA-CK-6746-01 3 47950941 47950941 T G MAP4 Intron 0.31 TCGA-CK-6746-01 3 48463100 48463100 G A PLXNB1 Nonsense_Mutation p.R546* 0.55 TCGA-CK-6746-01 3 48501288 48501288 C - ATRIP Frame_Shift_Del p.L345Cfs*31 0.35 TCGA-CK-6746-01 3 48507887 48507887 A - TREX1 5'UTR p.M1? 0.30 TCGA-CK-6746-01 3 48689431 48689431 G - CELSR3 Frame_Shift_Del p.S1935Afs*4 0.28 TCGA-CK-6746-01 3 49053155 49053155 G A WDR6 3'UTR 0.47 TCGA-CK-6746-01 3 49152231 49152231 A G USP19 Missense_Mutation p.Y751H 0.47 deleterious(0) probably_damaging(0.992) TCGA-CK-6746-01 3 49395068 49395069 - C GPX1 Frame_Shift_Ins p.A122Gfs*? 0.16 TCGA-CK-6746-01 3 49756676 49756676 G A AMIGO3 Missense_Mutation p.R75C 0.33 deleterious(0.02) possibly_damaging(0.517) TCGA-CK-6746-01 3 49898965 49898965 G T CAMKV Nonsense_Mutation p.Y116* 0.35 TCGA-CK-6746-01 3 50091791 50091791 C T RBM6 Silent p.H552H 0.43 TCGA-CK-6746-01 3 50214292 50214292 T C SEMA3F Missense_Mutation p.I214T 0.33 tolerated(0.33) probably_damaging(0.969) TCGA-CK-6746-01 3 50293633 50293633 C T GNAI2 Silent p.N158N 0.41 TCGA-CK-6746-01 3 52416442 52416442 C T DNAH1 Missense_Mutation p.P2638S 0.50 benign(0.021) TCGA-CK-6746-01 3 52610689 52610689 C T PBRM1 Missense_Mutation p.G1162R 0.32 deleterious(0) probably_damaging(0.979) TCGA-CK-6746-01 3 53845331 53845331 T C CACNA1D Silent p.Y2148Y 0.38 TCGA-CK-6746-01 3 63981349 63981349 G A ATXN7 Silent p.S617S 0.44 TCGA-CK-6746-01 3 63981841 63981841 C T ATXN7 Silent p.T781T 0.44 TCGA-CK-6746-01 3 64547413 64547413 A C ADAMTS9 Missense_Mutation p.C1513W 0.51 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 3 73113155 73113155 T C PPP4R2 Missense_Mutation p.S166P 0.40 deleterious(0.04) probably_damaging(0.933) TCGA-CK-6746-01 3 78680337 78680337 T G ROBO1 Missense_Mutation p.E1200D 0.36 tolerated(0.41) benign(0.197) TCGA-CK-6746-01 3 78717401 78717401 G T ROBO1 Missense_Mutation p.P561H 0.32 deleterious(0) probably_damaging(0.995) TCGA-CK-6746-01 3 81691953 81691953 C T GBE1 Missense_Mutation p.S324N 0.56 deleterious(0) probably_damaging(0.979) TCGA-CK-6746-01 3 8675473 8675473 G A SSUH2 Missense_Mutation p.A73V 0.63 tolerated(0.98) benign(0) TCGA-CK-6746-01 3 88205683 88205683 T C C3orf38 Silent p.S296S 0.36 TCGA-CK-6746-01 3 89521625 89521625 T G EPHA3 Missense_Mutation p.L901R 0.46 tolerated(0.33) probably_damaging(0.997) TCGA-CK-6746-01 3 9032212 9032212 G A SRGAP3 Missense_Mutation p.A957V 0.40 deleterious_low_confidence(0.04) benign(0.05) TCGA-CK-6746-01 3 9515106 9515106 A - SETD5 Frame_Shift_Del p.K1129Nfs*15 0.29 TCGA-CK-6746-01 3 97367129 97367129 G T EPHA6 Intron 0.38 TCGA-CK-6746-01 3 9874930 9874930 G A TTLL3 Splice_Site p.X709_splice 0.75 TCGA-CK-6746-01 4 100756888 100756889 CT - DAPP1 Frame_Shift_Del p.S73Cfs*8 0.37 TCGA-CK-6746-01 4 101947138 101947138 G A PPP3CA Missense_Mutation p.P484S 0.39 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 4 103720082 103720082 T C UBE2D3 Intron 0.41 TCGA-CK-6746-01 4 106395116 106395116 G A PPA2 Missense_Mutation p.A31V 0.34 tolerated(0.12) benign(0.003) TCGA-CK-6746-01 4 108866643 108866643 T - CYP2U1 Frame_Shift_Del p.F337Lfs*34 0.29 TCGA-CK-6746-01 4 109088883 109088883 T C LEF1 Missense_Mutation p.D14G 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-CK-6746-01 4 110754328 110754328 T C RRH Missense_Mutation p.L47P 0.38 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 4 111543539 111543539 G T PITX2 Silent p.S26S 0.48 TCGA-CK-6746-01 4 114276817 114276817 C T ANK2 Missense_Mutation p.A2348V 0.41 benign(0.096) TCGA-CK-6746-01 4 122831497 122831497 C A TRPC3 Missense_Mutation p.R535M 0.35 deleterious(0.01) probably_damaging(0.912) TCGA-CK-6746-01 4 123269834 123269834 C T KIAA1109 Silent p.N4414N 0.44 TCGA-CK-6746-01 4 124322987 124322987 A G SPRY1 Missense_Mutation p.I81V 0.42 tolerated(0.48) benign(0.003) TCGA-CK-6746-01 4 125591195 125591195 G A ANKRD50 Silent p.R1079R 0.42 TCGA-CK-6746-01 4 128688324 128688324 G T SLC25A31 Missense_Mutation p.Q194H 0.41 tolerated(0.06) probably_damaging(0.997) TCGA-CK-6746-01 4 128811163 128811163 A G PLK4 Silent p.A534A 0.43 TCGA-CK-6746-01 4 128851907 128851907 C T MFSD8 Missense_Mutation p.G310D 0.46 deleterious(0) probably_damaging(0.997) TCGA-CK-6746-01 4 129880885 129880885 G A SCLT1 Missense_Mutation p.T306I 0.41 tolerated(0.24) benign(0.014) TCGA-CK-6746-01 4 134072405 134072405 C T PCDH10 Silent p.G370G 0.34 TCGA-CK-6746-01 4 134072692 134072692 C T PCDH10 Missense_Mutation p.P466L 0.55 deleterious(0.04) benign(0.046) TCGA-CK-6746-01 4 13604004 13604004 G A BOD1L1 Missense_Mutation p.T1507I 0.36 benign(0.005) TCGA-CK-6746-01 4 13604624 13604624 T C BOD1L1 Silent p.V1300V 0.43 TCGA-CK-6746-01 4 140309090 140309092 AAG - NAA15 In_Frame_Del p.E819del 0.41 TCGA-CK-6746-01 4 140641432 140641432 T C MAML3 Missense_Mutation p.Q821R 0.38 probably_damaging(0.989) TCGA-CK-6746-01 4 142143645 142143645 G T ZNF330 Missense_Mutation p.M40I 0.50 tolerated(0.06) possibly_damaging(0.487) TCGA-CK-6746-01 4 146059216 146059216 C T OTUD4 Missense_Mutation p.G839D 0.40 tolerated(0.3) benign(0.009) TCGA-CK-6746-01 4 151231427 151231427 G T LRBA Silent p.V2612V 0.45 TCGA-CK-6746-01 4 153245461 153245461 A G FBXW7 Missense_Mutation p.L577S 0.84 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 4 154702738 154702738 G A SFRP2 Silent p.N251N 0.32 TCGA-CK-6746-01 4 159052061 159052061 G A FAM198B Missense_Mutation p.A418V 0.40 tolerated(1) benign(0) TCGA-CK-6746-01 4 165878614 165878615 - G FAM218A Frame_Shift_Ins p.W149Lfs*24 0.31 TCGA-CK-6746-01 4 166915679 166915679 T G TLL1 Missense_Mutation p.F170V 0.88 deleterious(0.01) probably_damaging(0.984) TCGA-CK-6746-01 4 169197286 169197286 C T DDX60 Silent p.R675R 0.34 TCGA-CK-6746-01 4 169315687 169315687 A G DDX60L Missense_Mutation p.Y1247H 0.45 deleterious(0) probably_damaging(0.987) TCGA-CK-6746-01 4 169931100 169931100 G A CBR4 Silent p.G47G 0.54 TCGA-CK-6746-01 4 170051296 170051296 A G SH3RF1 Silent p.S360S 0.44 TCGA-CK-6746-01 4 1730512 1730512 C T TACC3 Silent p.S461S 0.40 TCGA-CK-6746-01 4 174219445 174219445 A G GALNT7 Missense_Mutation p.Y382C 0.51 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 4 175899313 175899313 A - ADAM29 3'UTR 0.27 TCGA-CK-6746-01 4 17805676 17805676 C A DCAF16 Missense_Mutation p.G30V 0.38 tolerated_low_confidence(0.09) probably_damaging(0.979) TCGA-CK-6746-01 4 186068076 186068076 G A SLC25A4 Missense_Mutation p.G283D 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-CK-6746-01 4 186185686 186185686 G A SNX25 Missense_Mutation p.V112M 0.42 deleterious(0.05) possibly_damaging(0.675) TCGA-CK-6746-01 4 186320092 186320092 A G ANKRD37 Missense_Mutation p.D61G 0.44 deleterious(0) possibly_damaging(0.585) TCGA-CK-6746-01 4 186321467 186321467 T C UFSP2 3'UTR 0.86 TCGA-CK-6746-01 4 186379621 186379622 - T CCDC110 Frame_Shift_Ins p.M707Nfs*9 0.32 TCGA-CK-6746-01 4 187542219 187542219 T C FAT1 Missense_Mutation p.S1841G 0.08 benign(0.217) TCGA-CK-6746-01 4 2343303 2343303 A G ZFYVE28 Missense_Mutation p.C74R 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-CK-6746-01 4 2944067 2944067 C T NOP14 Missense_Mutation p.V635M 0.48 deleterious(0) probably_damaging(0.993) TCGA-CK-6746-01 4 36345314 36345314 C T DTHD1 Silent p.T738T 0.40 TCGA-CK-6746-01 4 37446963 37446963 A G KIAA1239 Missense_Mutation p.Y1118C 0.37 tolerated(0.18) benign(0.001) TCGA-CK-6746-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.49 TCGA-CK-6746-01 4 38907202 38907202 A C FAM114A1 Missense_Mutation p.N166H 0.46 deleterious(0.01) probably_damaging(0.95) TCGA-CK-6746-01 4 39864591 39864591 C T PDS5A Missense_Mutation p.A957T 0.42 deleterious(0.01) probably_damaging(1) TCGA-CK-6746-01 4 49064071 49064071 T C CWH43 3'UTR 0.45 TCGA-CK-6746-01 4 5500696 5500696 C A STK32B Silent p.G377G 0.33 TCGA-CK-6746-01 4 5576499 5576499 A C EVC2 Missense_Mutation p.C1091W 0.36 deleterious(0) benign(0.002) TCGA-CK-6746-01 4 56837536 56837537 AA - CEP135 Frame_Shift_Del p.R405Tfs*2 0.21 TCGA-CK-6746-01 4 57182719 57182719 G A KIAA1211 Silent p.S1017S 0.42 TCGA-CK-6746-01 4 62599062 62599062 G A LPHN3 Missense_Mutation p.D329N 0.31 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 4 6380250 6380250 A G PPP2R2C Missense_Mutation p.F73S 0.44 deleterious(0) probably_damaging(0.997) TCGA-CK-6746-01 4 65188508 65188508 C T TECRL Missense_Mutation p.G112R 0.88 deleterious(0.03) possibly_damaging(0.864) TCGA-CK-6746-01 4 68384936 68384936 T - CENPC Frame_Shift_Del p.R206Gfs*2 0.30 TCGA-CK-6746-01 4 6865106 6865106 T C KIAA0232 Silent p.N999N 0.32 TCGA-CK-6746-01 4 68688047 68688047 T C TMPRSS11D 3'UTR 0.32 TCGA-CK-6746-01 4 6925474 6925474 C T TBC1D14 Missense_Mutation p.R120W 0.38 tolerated_low_confidence(0.08) benign(0) TCGA-CK-6746-01 4 70897793 70897793 A G HTN3 Splice_Site p.X25_splice 0.43 TCGA-CK-6746-01 4 71232602 71232602 G A SMR3A Missense_Mutation p.G99D 0.36 tolerated_low_confidence(0.46) unknown(0) TCGA-CK-6746-01 4 72423492 72423492 C T SLC4A4 Missense_Mutation p.R943C 0.57 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 4 73990658 73990659 GA - ANKRD17 Frame_Shift_Del p.S1155Lfs*21 0.35 TCGA-CK-6746-01 4 76857233 76857233 T - NAAA Intron 0.33 TCGA-CK-6746-01 4 79400646 79400646 G A FRAS1 Silent p.A2739A 0.41 TCGA-CK-6746-01 4 79458341 79458341 G C FRAS1 Missense_Mutation p.R3762T 0.38 probably_damaging(0.999) TCGA-CK-6746-01 4 8294060 8294060 G - HTRA3 Frame_Shift_Del p.G307Dfs*4 0.37 TCGA-CK-6746-01 4 93225841 93225841 G A GRID2 Missense_Mutation p.V12I 0.41 tolerated_low_confidence(0.24) benign(0.015) TCGA-CK-6746-01 4 95173923 95173923 T C SMARCAD1 Missense_Mutation p.F349S 0.44 tolerated(0.46) benign(0.108) TCGA-CK-6746-01 4 95200080 95200080 A - SMARCAD1 Frame_Shift_Del p.N770Tfs*8 0.32 TCGA-CK-6746-01 4 9785349 9785349 G C DRD5 3'UTR 0.35 TCGA-CK-6746-01 4 9785421 9785421 G T DRD5 3'UTR 0.23 TCGA-CK-6746-01 4 99823087 99823087 G A EIF4E Missense_Mutation p.T22M 0.35 tolerated(0.07) possibly_damaging(0.855) TCGA-CK-6746-01 5 101583064 101583064 C A SLCO4C1 Missense_Mutation p.G568V 0.43 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 5 102612501 102612501 A - C5orf30 3'UTR 0.25 TCGA-CK-6746-01 5 1073803 1073803 G A SLC12A7 Missense_Mutation p.S729L 0.37 deleterious(0) benign(0.251) TCGA-CK-6746-01 5 112175166 112175166 C T APC Missense_Mutation p.T1292M 0.48 benign(0.088) TCGA-CK-6746-01 5 112770026 112770026 A G TSSK1B Silent p.L171L 0.08 TCGA-CK-6746-01 5 115173430 115173430 A T ATG12 Silent p.T65T 0.42 TCGA-CK-6746-01 5 122135467 122135467 G A SNX2 Missense_Mutation p.V103I 0.32 tolerated(0.83) benign(0.016) TCGA-CK-6746-01 5 124080411 124080411 G A ZNF608 Missense_Mutation p.S91F 0.42 deleterious(0) possibly_damaging(0.549) TCGA-CK-6746-01 5 127599170 127599170 C T FBN2 Silent p.T2713T 0.33 TCGA-CK-6746-01 5 127653937 127653937 T C FBN2 Missense_Mutation p.N1541D 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-CK-6746-01 5 131007506 131007507 - T FNIP1 Frame_Shift_Ins p.N877Kfs*2 0.31 TCGA-CK-6746-01 5 131657936 131657936 T - SLC22A4 Frame_Shift_Del p.F239Lfs*25 0.29 TCGA-CK-6746-01 5 131663047 131663047 C T SLC22A4 Missense_Mutation p.A301V 0.38 deleterious(0) possibly_damaging(0.863) TCGA-CK-6746-01 5 131915179 131915179 T - RAD50 Frame_Shift_Del p.S181Qfs*9 0.31 TCGA-CK-6746-01 5 132094252 132094252 A - SEPT8 Intron 0.32 TCGA-CK-6746-01 5 132099417 132099417 A G SEPT8 Missense_Mutation p.M172T 0.47 deleterious(0) probably_damaging(0.995) TCGA-CK-6746-01 5 132200088 132200088 A G GDF9 Silent p.P46P 0.43 TCGA-CK-6746-01 5 134364888 134364888 C T PITX1 Missense_Mutation p.A176T 0.49 tolerated(0.35) possibly_damaging(0.499) TCGA-CK-6746-01 5 134696262 134696262 G A H2AFY Silent p.A171A 0.37 TCGA-CK-6746-01 5 134785157 134785157 G - TIFAB Frame_Shift_Del p.P158Lfs*58 0.36 TCGA-CK-6746-01 5 134870879 134870879 G A NEUROG1 Nonsense_Mutation p.Q168* 0.55 TCGA-CK-6746-01 5 135276286 135276286 G A FBXL21 RNA 0.32 TCGA-CK-6746-01 5 138118880 138118880 A - CTNNA1 Frame_Shift_Del p.N41Tfs*54 0.31 TCGA-CK-6746-01 5 138269746 138269746 C A CTNNA1 Missense_Mutation p.L897I 0.67 deleterious(0) probably_damaging(0.94) TCGA-CK-6746-01 5 139193288 139193288 G - PSD2 Frame_Shift_Del p.D258Mfs*13 0.34 TCGA-CK-6746-01 5 139887481 139887481 G A ANKHD1 Silent p.E1221E 0.43 TCGA-CK-6746-01 5 140166575 140166575 G A PCDHA1 Missense_Mutation p.D234N 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.62) TCGA-CK-6746-01 5 140222978 140222978 C T PCDHA8 Missense_Mutation p.A691V 0.92 tolerated_low_confidence(0.17) benign(0.011) TCGA-CK-6746-01 5 140232842 140232842 T C PCDHA9 Intron 0.89 TCGA-CK-6746-01 5 140256927 140256927 G A PCDHA12 Missense_Mutation p.V624M 0.43 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-CK-6746-01 5 140262845 140262845 C T PCDHA13 Missense_Mutation p.A331V 0.40 tolerated_low_confidence(0.4) benign(0.026) TCGA-CK-6746-01 5 140480875 140480875 G A PCDHB3 Silent p.A214A 0.43 TCGA-CK-6746-01 5 140502862 140502862 C T PCDHB4 Missense_Mutation p.P428S 0.36 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 5 140590108 140590108 C T PCDHB12 Silent p.S543S 0.45 TCGA-CK-6746-01 5 140595773 140595773 C T PCDHB13 Missense_Mutation p.A693V 0.42 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-CK-6746-01 5 140596735 140596735 T C PCDHB13 3'UTR 0.42 TCGA-CK-6746-01 5 140724166 140724166 C G PCDHGA3 Missense_Mutation p.A189G 0.54 tolerated_low_confidence(0.11) benign(0.007) TCGA-CK-6746-01 5 140762891 140762891 T C PCDHGA7 Missense_Mutation p.I142T 0.39 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-CK-6746-01 5 140772435 140772435 C T PCDHGA8 Silent p.L19L 0.57 TCGA-CK-6746-01 5 140857013 140857013 C T PCDHGC3 Missense_Mutation p.R444C 0.39 tolerated(0.17) possibly_damaging(0.606) TCGA-CK-6746-01 5 141026774 141026775 - T FCHSD1 Frame_Shift_Ins p.L285Afs*23 0.31 TCGA-CK-6746-01 5 141033740 141033740 G T ARAP3 Nonsense_Mutation p.S1471* 0.46 TCGA-CK-6746-01 5 142281547 142281547 C T ARHGAP26 Silent p.Y215Y 0.39 TCGA-CK-6746-01 5 142661418 142661418 C T NR3C1 3'UTR 0.52 TCGA-CK-6746-01 5 149357346 149357346 C T SLC26A2 Missense_Mutation p.T44I 0.52 deleterious(0.04) benign(0.019) TCGA-CK-6746-01 5 150072821 150072821 G T RBM22 Missense_Mutation p.D320E 0.60 tolerated(0.86) benign(0) TCGA-CK-6746-01 5 156964948 156964948 G A ADAM19 Silent p.N101N 0.45 TCGA-CK-6746-01 5 168111055 168111055 T C SLIT3 Missense_Mutation p.N1201S 0.20 tolerated(0.44) possibly_damaging(0.761) TCGA-CK-6746-01 5 170725862 170725862 A G RANBP17 Nonstop_Mutation p.*1089Wext*96 0.37 TCGA-CK-6746-01 5 172744959 172744959 T C STC2 Missense_Mutation p.H267R 0.41 tolerated_low_confidence(0.21) benign(0.032) TCGA-CK-6746-01 5 176738408 176738408 G - MXD3 Frame_Shift_Del p.Q50Rfs*24 0.14 TCGA-CK-6746-01 5 176831872 176831872 C A F12 Missense_Mutation p.E191D 0.40 tolerated(0.36) possibly_damaging(0.755) TCGA-CK-6746-01 5 178413956 178413956 G A GRM6 Silent p.N461N 0.41 TCGA-CK-6746-01 5 180477225 180477225 T C BTNL9 Missense_Mutation p.F198L 0.48 tolerated(0.66) benign(0.013) TCGA-CK-6746-01 5 19571845 19571845 C A CDH18 Missense_Mutation p.D366Y 0.43 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 5 23526665 23526665 G T PRDM9 Nonsense_Mutation p.G490* 0.40 TCGA-CK-6746-01 5 23527002 23527002 A G PRDM9 Missense_Mutation p.H602R 0.25 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 5 24511519 24511519 G T CDH10 Silent p.R307R 0.33 TCGA-CK-6746-01 5 32074154 32074154 A G PDZD2 Missense_Mutation p.D981G 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-CK-6746-01 5 32601324 32601324 T - SUB1 3'UTR 0.53 TCGA-CK-6746-01 5 32780866 32780866 C T NPR3 Nonsense_Mutation p.R412* 0.47 TCGA-CK-6746-01 5 33637809 33637809 G T ADAMTS12 Silent p.R587R 0.36 TCGA-CK-6746-01 5 33998746 33998746 C T AMACR Missense_Mutation p.G247R 0.32 tolerated(0.27) possibly_damaging(0.723) TCGA-CK-6746-01 5 34937608 34937608 C T DNAJC21 Silent p.L206L 0.47 TCGA-CK-6746-01 5 38425101 38425101 T C EGFLAM Missense_Mutation p.S573P 0.46 tolerated(0.39) benign(0.03) TCGA-CK-6746-01 5 38496580 38496580 G A LIFR Nonsense_Mutation p.R597* 0.48 TCGA-CK-6746-01 5 41008834 41008834 T G MROH2B Missense_Mutation p.E1161A 0.34 tolerated(0.08) benign(0.029) TCGA-CK-6746-01 5 41203346 41203346 C A C6 5'UTR 0.53 TCGA-CK-6746-01 5 52382823 52382823 C A ITGA2 Silent p.I1100I 0.48 TCGA-CK-6746-01 5 56178055 56178055 A G MAP3K1 Missense_Mutation p.I1010V 0.43 tolerated_low_confidence(1) benign(0) TCGA-CK-6746-01 5 61847134 61847134 A G IPO11 Missense_Mutation p.N851D 0.37 tolerated(0.44) benign(0.002) TCGA-CK-6746-01 5 63256940 63256940 C T HTR1A Missense_Mutation p.A203T 0.52 tolerated(0.37) probably_damaging(1) TCGA-CK-6746-01 5 65317214 65317214 G T ERBB2IP Splice_Site p.X199_splice 0.32 TCGA-CK-6746-01 5 68399967 68399967 T C SLC30A5 Intron 0.46 TCGA-CK-6746-01 5 70791185 70791185 T G BDP1 Silent p.A583A 0.46 TCGA-CK-6746-01 5 74324763 74324763 C T GCNT4 Missense_Mutation p.R367H 0.33 deleterious(0.01) possibly_damaging(0.868) TCGA-CK-6746-01 5 76249984 76249984 C T CRHBP Silent p.I102I 0.26 TCGA-CK-6746-01 5 7867822 7867822 C T FASTKD3 Silent p.L125L 0.40 TCGA-CK-6746-01 5 79033075 79033075 C T CMYA5 Silent p.N2829N 0.55 TCGA-CK-6746-01 5 79732911 79732911 T C ZFYVE16 Missense_Mutation p.L136S 0.14 deleterious(0.03) probably_damaging(0.949) TCGA-CK-6746-01 5 80513218 80513218 G T RASGRF2 Missense_Mutation p.D1160Y 0.39 deleterious(0) probably_damaging(0.997) TCGA-CK-6746-01 5 81571879 81571879 T - RPS23 3'UTR 0.30 TCGA-CK-6746-01 5 82833280 82833280 C T VCAN Silent p.Y1486Y 0.50 TCGA-CK-6746-01 5 916075 916075 C T TRIP13 Missense_Mutation p.A397V 0.59 deleterious(0) possibly_damaging(0.791) TCGA-CK-6746-01 5 93076993 93076993 G A POU5F2 Nonsense_Mutation p.R93* 0.43 TCGA-CK-6746-01 5 94206575 94206575 A G MCTP1 Splice_Site p.X747_splice 0.37 TCGA-CK-6746-01 5 95297411 95297411 C - ELL2 Frame_Shift_Del p.T6Qfs*27 0.28 TCGA-CK-6746-01 5 9630024 9630024 T - TAS2R1 Frame_Shift_Del p.M41Wfs*27 0.28 TCGA-CK-6746-01 6 100395743 100395743 C A MCHR2 Missense_Mutation p.G96V 0.43 deleterious(0) probably_damaging(0.965) TCGA-CK-6746-01 6 106554274 106554274 G A PRDM1 Missense_Mutation p.R601Q 0.48 deleterious(0.01) probably_damaging(0.995) TCGA-CK-6746-01 6 106555352 106555352 G T PRDM1 Missense_Mutation p.M823I 0.44 tolerated_low_confidence(0.16) benign(0.04) TCGA-CK-6746-01 6 107232052 107232052 G A MIR587 RNA 0.53 TCGA-CK-6746-01 6 107955185 107955185 G A SOBP Silent p.P379P 0.31 TCGA-CK-6746-01 6 108508786 108508786 A G NR2E1 3'UTR 0.30 TCGA-CK-6746-01 6 11185718 11185718 C T NEDD9 Missense_Mutation p.A728T 0.44 deleterious(0) probably_damaging(0.982) TCGA-CK-6746-01 6 112443218 112443218 T C LAMA4 Missense_Mutation p.K1492E 0.42 tolerated(0.05) benign(0.271) TCGA-CK-6746-01 6 116757992 116757992 G T DSE Missense_Mutation p.E787D 0.38 tolerated_low_confidence(0.09) benign(0.024) TCGA-CK-6746-01 6 118880744 118880744 T A PLN 3'UTR 0.48 TCGA-CK-6746-01 6 119332569 119332569 T G FAM184A Missense_Mutation p.K520Q 0.40 tolerated(0.05) benign(0.267) TCGA-CK-6746-01 6 126661422 126661422 G A CENPW Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-CK-6746-01 6 131912502 131912502 G - MED23 Frame_Shift_Del p.H1213Mfs*26 0.24 TCGA-CK-6746-01 6 131931289 131931289 C - MED23 Frame_Shift_Del p.G325Efs*36 0.36 TCGA-CK-6746-01 6 135290403 135290403 G A HBS1L Missense_Mutation p.T624M 0.38 deleterious(0) possibly_damaging(0.507) TCGA-CK-6746-01 6 139488184 139488184 G T HECA Silent p.R345R 0.48 TCGA-CK-6746-01 6 144508325 144508325 C T STX11 Silent p.D187D 0.36 TCGA-CK-6746-01 6 144759958 144759958 G A UTRN Missense_Mutation p.R440H 0.43 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 6 144878418 144878418 A - UTRN Frame_Shift_Del p.T2422Hfs*35 0.34 TCGA-CK-6746-01 6 147067091 147067091 G T ADGB Missense_Mutation p.G1071C 0.43 deleterious(0) probably_damaging(0.991) TCGA-CK-6746-01 6 148867254 148867254 A G SASH1 Missense_Mutation p.K1151R 0.40 deleterious(0.05) probably_damaging(0.993) TCGA-CK-6746-01 6 149925864 149925864 C T KATNA1 Missense_Mutation p.G186R 0.47 deleterious(0) possibly_damaging(0.76) TCGA-CK-6746-01 6 151670381 151670381 T C AKAP12 Silent p.T285T 0.52 TCGA-CK-6746-01 6 152673183 152673183 T - SYNE1 Frame_Shift_Del p.A3854Lfs*20 0.29 TCGA-CK-6746-01 6 154360528 154360528 C T OPRM1 Intron 0.61 TCGA-CK-6746-01 6 15501214 15501215 - A JARID2 Frame_Shift_Ins p.W677Mfs*133 0.31 TCGA-CK-6746-01 6 155450781 155450781 G A TIAM2 Missense_Mutation p.G142R 0.62 deleterious_low_confidence(0.05) benign(0.035) TCGA-CK-6746-01 6 157528558 157528558 A G ARID1B Missense_Mutation p.N2095D 0.33 probably_damaging(0.99) TCGA-CK-6746-01 6 159134903 159134903 C T SYTL3 Silent p.H196H 0.41 TCGA-CK-6746-01 6 160169514 160169514 A - WTAP Intron 0.39 TCGA-CK-6746-01 6 160471547 160471547 G A IGF2R Missense_Mutation p.A853T 0.32 deleterious(0.01) benign(0.25) TCGA-CK-6746-01 6 161159616 161159616 G A PLG Missense_Mutation p.V617M 0.40 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 6 165752821 165752821 T C PDE10A Missense_Mutation p.I708M 0.52 tolerated(0.07) benign(0.074) TCGA-CK-6746-01 6 166580201 166580201 G A T Missense_Mutation p.P117L 0.48 deleterious(0.01) possibly_damaging(0.77) TCGA-CK-6746-01 6 167728713 167728713 G A UNC93A Missense_Mutation p.A383T 0.24 deleterious(0) probably_damaging(0.988) TCGA-CK-6746-01 6 168227233 168227233 C A MLLT4 5'Flank 0.49 TCGA-CK-6746-01 6 168709033 168709033 G T DACT2 Missense_Mutation p.D468E 0.41 tolerated(0.99) benign(0.115) TCGA-CK-6746-01 6 169634873 169634873 T C THBS2 Missense_Mutation p.D536G 0.50 deleterious(0.02) benign(0.001) TCGA-CK-6746-01 6 170169671 170169671 T C ERMARD Silent p.G365G 0.38 TCGA-CK-6746-01 6 17624928 17624928 A C NUP153 Silent p.S1346S 0.25 TCGA-CK-6746-01 6 18122346 18122346 A G NHLRC1 Silent p.F164F 0.51 TCGA-CK-6746-01 6 19838305 19838305 C T ID4 Missense_Mutation p.A107V 0.23 tolerated(0.16) benign(0.186) TCGA-CK-6746-01 6 24146261 24146261 G A NRSN1 3'UTR 0.47 TCGA-CK-6746-01 6 28227519 28227520 GA - NKAPL Frame_Shift_Del p.R127Dfs*8 0.33 TCGA-CK-6746-01 6 29430723 29430723 T C OR2H1 3'UTR 0.47 TCGA-CK-6746-01 6 30071892 30071892 C T TRIM31 Silent p.G337G 0.42 TCGA-CK-6746-01 6 30672398 30672398 C T MDC1 Missense_Mutation p.R1521Q 0.41 deleterious(0.03) benign(0.003) TCGA-CK-6746-01 6 31323363 31323363 G - HLA-B Frame_Shift_Del p.P209Qfs*5 0.34 TCGA-CK-6746-01 6 31557868 31557868 T A NCR3 Missense_Mutation p.I27F 0.59 deleterious(0.04) possibly_damaging(0.905) TCGA-CK-6746-01 6 31779009 31779009 G A HSPA1L Silent p.F247F 0.49 TCGA-CK-6746-01 6 31868484 31868484 T C ZBTB12 Missense_Mutation p.D200G 0.47 tolerated(0.28) possibly_damaging(0.539) TCGA-CK-6746-01 6 32800519 32800519 C T TAP2 Missense_Mutation p.R343H 0.45 deleterious(0) probably_damaging(0.994) TCGA-CK-6746-01 6 32946104 32946104 G - BRD2 Frame_Shift_Del p.G595Vfs*6 0.38 TCGA-CK-6746-01 6 33054628 33054628 A G HLA-DPB1 3'UTR 0.58 TCGA-CK-6746-01 6 33163978 33163978 A G RXRB Intron 0.44 TCGA-CK-6746-01 6 33178990 33178990 G - RING1 Frame_Shift_Del p.E173Kfs*14 0.48 TCGA-CK-6746-01 6 33259870 33259870 G A RGL2 3'UTR 0.44 TCGA-CK-6746-01 6 33284506 33284506 A G ZBTB22 Missense_Mutation p.V63A 0.46 deleterious(0.02) benign(0.166) TCGA-CK-6746-01 6 33746072 33746072 C T LEMD2 Missense_Mutation p.R368H 0.42 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 6 36823777 36823777 G A PPIL1 Missense_Mutation p.P105S 0.41 deleterious(0.01) probably_damaging(0.932) TCGA-CK-6746-01 6 39158621 39158621 G - KCNK5 3'UTR 0.47 TCGA-CK-6746-01 6 407567 407567 G A IRF4 Missense_Mutation p.R442K 0.39 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CK-6746-01 6 42934574 42934574 T C PEX6 Missense_Mutation p.Y636C 0.26 tolerated(0.86) benign(0) TCGA-CK-6746-01 6 43146905 43146905 G A SRF Missense_Mutation p.A502T 0.32 tolerated_low_confidence(0.76) benign(0.001) TCGA-CK-6746-01 6 43155545 43155545 C T CUL9 Missense_Mutation p.T559I 0.38 tolerated(0.06) benign(0.002) TCGA-CK-6746-01 6 43271815 43271815 G - SLC22A7 Frame_Shift_Del p.G477Afs*67 0.46 TCGA-CK-6746-01 6 44201185 44201185 G T SLC29A1 Nonsense_Mutation p.G431* 0.43 TCGA-CK-6746-01 6 44982549 44982549 T C SUPT3H Missense_Mutation p.D129G 0.42 deleterious(0) possibly_damaging(0.742) TCGA-CK-6746-01 6 4891977 4891977 A - CDYL Frame_Shift_Del p.K22Rfs*25 0.31 TCGA-CK-6746-01 6 51890344 51890344 G T PKHD1 Silent p.R1422R 0.48 TCGA-CK-6746-01 6 53372385 53372385 T C GCLC Missense_Mutation p.K326R 0.41 deleterious(0) probably_damaging(0.991) TCGA-CK-6746-01 6 56510743 56510743 T C DST 5'Flank 0.33 TCGA-CK-6746-01 6 56918751 56918751 C T KIAA1586 Missense_Mutation p.A485V 0.41 tolerated(0.88) benign(0.016) TCGA-CK-6746-01 6 70980027 70980027 G - COL9A1 Frame_Shift_Del p.P396Qfs*33 0.27 TCGA-CK-6746-01 6 75912519 75912519 C T COL12A1 5'UTR 0.45 TCGA-CK-6746-01 6 75965692 75965692 T - TMEM30A 3'UTR 0.45 TCGA-CK-6746-01 6 76423416 76423416 A - SENP6 Frame_Shift_Del p.G1004Efs*11 0.31 TCGA-CK-6746-01 6 84417614 84417614 G A SNAP91 Silent p.A11A 0.43 TCGA-CK-6746-01 6 85457789 85457789 A G TBX18 Missense_Mutation p.M263T 0.37 deleterious(0) probably_damaging(0.981) TCGA-CK-6746-01 6 87970482 87970482 A G ZNF292 Missense_Mutation p.T2379A 0.42 deleterious(0.01) possibly_damaging(0.849) TCGA-CK-6746-01 6 97720887 97720887 A G MMS22L Missense_Mutation p.V131A 0.33 deleterious(0.01) benign(0.183) TCGA-CK-6746-01 6 99855988 99855988 T C PNISR Missense_Mutation p.D278G 0.39 tolerated(0.1) benign(0.108) TCGA-CK-6746-01 7 100212599 100212599 G A MOSPD3 Silent p.L207L 0.36 TCGA-CK-6746-01 7 100677970 100677970 G A MUC17 Missense_Mutation p.M1091I 0.14 benign(0.043) TCGA-CK-6746-01 7 100771865 100771865 C T SERPINE1 Missense_Mutation p.S64L 0.46 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 7 100806788 100806788 T C VGF Missense_Mutation p.E446G 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-CK-6746-01 7 1009024 1009024 G A COX19 Missense_Mutation p.A88V 0.40 tolerated(0.18) benign(0.003) TCGA-CK-6746-01 7 1022941 1022941 C - CYP2W1 Frame_Shift_Del p.P33Rfs*24 0.39 TCGA-CK-6746-01 7 102553520 102553520 C G LRRC17 5'UTR 0.49 TCGA-CK-6746-01 7 103234152 103234152 G A RELN Missense_Mutation p.P1297S 0.49 tolerated(0.14) benign(0.049) TCGA-CK-6746-01 7 106508121 106508121 C A PIK3CG Missense_Mutation p.P39T 0.46 tolerated(1) benign(0.002) TCGA-CK-6746-01 7 11030370 11030370 A - PHF14 Frame_Shift_Del p.M316Wfs*5 0.31 TCGA-CK-6746-01 7 111381718 111381718 C A DOCK4 Splice_Site p.X1591_splice 0.42 TCGA-CK-6746-01 7 11632881 11632881 G A THSD7A Missense_Mutation p.T424M 0.31 tolerated(0.08) benign(0.018) TCGA-CK-6746-01 7 116502628 116502628 T C CAPZA2 5'UTR 0.39 TCGA-CK-6746-01 7 120971879 120971880 GG - WNT16 Frame_Shift_Del p.G167Lfs*4 0.42 TCGA-CK-6746-01 7 122759228 122759228 T C SLC13A1 Missense_Mutation p.I473M 0.38 deleterious(0) probably_damaging(0.938) TCGA-CK-6746-01 7 123324577 123324577 T C WASL Missense_Mutation p.D505G 0.15 deleterious_low_confidence(0) unknown(0) TCGA-CK-6746-01 7 128852004 128852004 C - SMO Frame_Shift_Del p.P694Lfs*82 0.31 TCGA-CK-6746-01 7 130008466 130008466 T C CPA5 3'UTR 0.45 TCGA-CK-6746-01 7 134849429 134849429 G A TMEM140 Missense_Mutation p.G79D 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-CK-6746-01 7 137151664 137151664 C T DGKI Intron 0.41 TCGA-CK-6746-01 7 138430000 138430000 C T ATP6V0A4 Missense_Mutation p.R449H 0.41 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 7 138432271 138432271 C T ATP6V0A4 Missense_Mutation p.V407M 0.40 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 7 138968182 138968182 C T UBN2 Missense_Mutation p.P844L 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CK-6746-01 7 140051073 140051073 C T SLC37A3 Silent p.P294P 0.34 TCGA-CK-6746-01 7 140379043 140379043 G A ADCK2 Missense_Mutation p.R390H 0.38 tolerated(0.28) benign(0.004) TCGA-CK-6746-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-CK-6746-01 7 141765169 141765169 G A MGAM Missense_Mutation p.V1507I 0.48 tolerated(0.15) benign(0.211) TCGA-CK-6746-01 7 142569456 142569456 G A TRPV6 3'UTR 0.41 TCGA-CK-6746-01 7 142609916 142609916 G A TRPV5 Missense_Mutation p.A507V 0.74 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 7 142640073 142640073 G A KEL Silent p.C610C 0.43 TCGA-CK-6746-01 7 143048903 143048903 C - CLCN1 Frame_Shift_Del p.P939Lfs*9 0.30 TCGA-CK-6746-01 7 147336379 147336379 A C CNTNAP2 Silent p.S693S 0.35 TCGA-CK-6746-01 7 149191479 149191479 G A ZNF746 Missense_Mutation p.A47V 0.46 tolerated(0.64) probably_damaging(0.987) TCGA-CK-6746-01 7 149462431 149462431 T C ZNF467 Missense_Mutation p.D387G 0.54 tolerated(0.38) benign(0.171) TCGA-CK-6746-01 7 149462959 149462959 C T ZNF467 Missense_Mutation p.R211H 0.52 tolerated(0.29) benign(0.06) TCGA-CK-6746-01 7 149545387 149545387 G - ZNF862 Frame_Shift_Del p.D271Mfs*9 0.25 TCGA-CK-6746-01 7 150068397 150068397 C T REPIN1 Missense_Mutation p.P80S 0.48 tolerated(0.25) benign(0.002) TCGA-CK-6746-01 7 150094405 150094405 G A ZNF775 Missense_Mutation p.R279H 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-CK-6746-01 7 150217211 150217211 C A GIMAP7 Missense_Mutation p.A50E 0.32 tolerated(0.13) benign(0.232) TCGA-CK-6746-01 7 150714250 150714250 G - ATG9B Frame_Shift_Del p.P721Qfs*61 0.32 TCGA-CK-6746-01 7 150972309 150972309 C T SMARCD3 5'UTR 0.39 TCGA-CK-6746-01 7 151064135 151064135 A - NUB1 Frame_Shift_Del p.K330Nfs*2 0.38 TCGA-CK-6746-01 7 151845524 151845524 A - KMT2C Frame_Shift_Del p.F4496Lfs*21 0.26 TCGA-CK-6746-01 7 157046710 157046710 C T UBE3C Silent p.Y919Y 0.29 TCGA-CK-6746-01 7 23293893 23293893 C T GPNMB Missense_Mutation p.A110V 0.37 tolerated(0.26) benign(0.008) TCGA-CK-6746-01 7 27211577 27211577 T G HOXA10 Missense_Mutation p.K392Q 0.25 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 7 2748265 2748265 G A AMZ1 Silent p.A172A 0.45 TCGA-CK-6746-01 7 27582619 27582619 G A HIBADH Silent p.N195N 0.43 TCGA-CK-6746-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.29 TCGA-CK-6746-01 7 36194488 36194488 C A EEPD1 Silent p.A185A 0.29 TCGA-CK-6746-01 7 37905168 37905168 A G NME8 Silent p.T190T 0.35 TCGA-CK-6746-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.31 TCGA-CK-6746-01 7 44198726 44198726 G A GCK 5'UTR 0.48 TCGA-CK-6746-01 7 47814603 47814603 C T PKD1L1 3'UTR 0.35 TCGA-CK-6746-01 7 47933568 47933568 C A PKD1L1 Missense_Mutation p.G787V 0.28 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 7 48141548 48141548 T C UPP1 Missense_Mutation p.M97T 0.34 deleterious(0.05) probably_damaging(0.987) TCGA-CK-6746-01 7 5327592 5327592 G A SLC29A4 Missense_Mutation p.G49S 0.45 deleterious(0.01) benign(0.082) TCGA-CK-6746-01 7 5430244 5430244 G T TNRC18 Missense_Mutation p.P120H 0.30 probably_damaging(0.974) TCGA-CK-6746-01 7 55492955 55492955 G A LANCL2 Silent p.K339K 0.41 TCGA-CK-6746-01 7 6542694 6542694 A - GRID2IP Frame_Shift_Del p.L1003Cfs*46 0.37 TCGA-CK-6746-01 7 720281 720281 G - PRKAR1B Frame_Shift_Del p.P87Rfs*5 0.67 TCGA-CK-6746-01 7 72413550 72413550 A G POM121 Silent p.A741A 0.13 TCGA-CK-6746-01 7 72849595 72849595 G A FZD9 Missense_Mutation p.G420S 0.21 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 7 73008088 73008088 G A MLXIPL 3'UTR 0.37 TCGA-CK-6746-01 7 73753038 73753038 C T CLIP2 Missense_Mutation p.R128C 0.32 deleterious(0) probably_damaging(0.982) TCGA-CK-6746-01 7 75508554 75508554 T C RHBDD2 Missense_Mutation p.S52P 0.42 tolerated(0.42) benign(0.028) TCGA-CK-6746-01 7 76054406 76054406 T C ZP3 Missense_Mutation p.V42A 0.50 deleterious(0) probably_damaging(0.97) TCGA-CK-6746-01 7 78150816 78150816 T C MAGI2 Missense_Mutation p.I229V 0.36 tolerated(0.42) benign(0.012) TCGA-CK-6746-01 7 80374104 80374104 T - SEMA3C 3'UTR 0.31 TCGA-CK-6746-01 7 80374508 80374508 G A SEMA3C Missense_Mutation p.T653I 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-CK-6746-01 7 81693654 81693654 C T CACNA2D1 Missense_Mutation p.A249T 0.47 tolerated(0.12) probably_damaging(0.941) TCGA-CK-6746-01 7 82545425 82545425 T C PCLO Missense_Mutation p.I3959M 0.52 unknown(0) TCGA-CK-6746-01 7 96653778 96653778 C - DLX5 Frame_Shift_Del p.G53Efs*28 0.38 TCGA-CK-6746-01 7 97800946 97800946 G A LMTK2 Missense_Mutation p.A251T 0.25 deleterious(0.04) probably_damaging(0.981) TCGA-CK-6746-01 7 97822893 97822893 C T LMTK2 Missense_Mutation p.S1039F 0.22 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 7 98506574 98506574 C T TRRAP Missense_Mutation p.R447W 0.53 benign(0.041) TCGA-CK-6746-01 7 98551048 98551048 G A TRRAP Missense_Mutation p.V1901I 0.39 possibly_damaging(0.84) TCGA-CK-6746-01 7 99668598 99668598 A G ZNF3 3'UTR 0.62 TCGA-CK-6746-01 8 103324084 103324084 A G UBR5 Missense_Mutation p.V766A 0.63 deleterious(0) probably_damaging(0.93) TCGA-CK-6746-01 8 104452459 104452459 T A DCAF13 Missense_Mutation p.I501N 0.28 deleterious(0) probably_damaging(0.974) TCGA-CK-6746-01 8 110980262 110980262 G A KCNV1 3'UTR 0.28 TCGA-CK-6746-01 8 11188902 11188902 G A SLC35G5 Missense_Mutation p.G96E 0.29 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 8 11412977 11412977 C T BLK Silent p.F252F 0.33 TCGA-CK-6746-01 8 11710867 11710867 A G CTSB Missense_Mutation p.Y33H 0.28 tolerated(0.16) benign(0.016) TCGA-CK-6746-01 8 123965305 123965305 G A ZHX2 Missense_Mutation p.G519S 0.29 tolerated(0.43) benign(0.002) TCGA-CK-6746-01 8 126033078 126033078 C T SQLE Silent p.G499G 0.26 TCGA-CK-6746-01 8 12882421 12882421 T A KIAA1456 3'UTR 0.64 TCGA-CK-6746-01 8 131861873 131861873 T G ADCY8 Missense_Mutation p.N796T 0.24 deleterious(0.04) benign(0.001) TCGA-CK-6746-01 8 131861946 131861946 G A ADCY8 Missense_Mutation p.R772W 0.23 deleterious(0) benign(0.01) TCGA-CK-6746-01 8 133142000 133142000 A G KCNQ3 Missense_Mutation p.Y710H 0.30 tolerated(0.16) possibly_damaging(0.526) TCGA-CK-6746-01 8 133764158 133764158 G A TMEM71 Nonsense_Mutation p.R63* 0.29 TCGA-CK-6746-01 8 135521993 135521993 C A ZFAT Splice_Site p.X1121_splice 0.52 TCGA-CK-6746-01 8 143356159 143356159 C A TSNARE1 Nonsense_Mutation p.G477* 0.26 TCGA-CK-6746-01 8 143781974 143781974 T C LY6K Missense_Mutation p.V10A 0.22 tolerated_low_confidence(0.12) unknown(0) TCGA-CK-6746-01 8 144406779 144406779 G A TOP1MT Missense_Mutation p.P231L 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-CK-6746-01 8 144672138 144672138 G A EEF1D Silent p.S38S 0.22 TCGA-CK-6746-01 8 145617035 145617035 C T ADCK5 Missense_Mutation p.A328V 0.62 tolerated(0.1) benign(0.104) TCGA-CK-6746-01 8 145770662 145770662 C T ARHGAP39 Missense_Mutation p.R831Q 0.32 deleterious(0) probably_damaging(0.966) TCGA-CK-6746-01 8 1497541 1497541 A G DLGAP2 Missense_Mutation p.T228A 0.30 tolerated(0.25) probably_damaging(0.984) TCGA-CK-6746-01 8 20067895 20067895 G A ATP6V1B2 Silent p.T110T 0.57 TCGA-CK-6746-01 8 20107217 20107217 C A LZTS1 3'UTR 0.63 TCGA-CK-6746-01 8 22265980 22265980 C T SLC39A14 Missense_Mutation p.T143M 0.28 deleterious(0.05) benign(0.429) TCGA-CK-6746-01 8 22451245 22451245 G A PDLIM2 Splice_Site p.X544_splice 0.18 TCGA-CK-6746-01 8 22570916 22570916 C A PEBP4 Missense_Mutation p.K217N 0.22 deleterious_low_confidence(0.04) benign(0.165) TCGA-CK-6746-01 8 22865168 22865168 T C RHOBTB2 Silent p.N492N 0.69 TCGA-CK-6746-01 8 24813203 24813203 G A CTD-2168K21.2 5'Flank 0.19 TCGA-CK-6746-01 8 25174607 25174607 T A DOCK5 Missense_Mutation p.V468E 0.29 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 8 26149190 26149190 T - PPP2R2A 5'Flank 0.43 TCGA-CK-6746-01 8 26212115 26212116 - A PPP2R2A Frame_Shift_Ins p.N116Kfs*11 0.25 TCGA-CK-6746-01 8 26721723 26721723 G A ADRA1A Missense_Mutation p.T255M 0.21 tolerated(0.13) probably_damaging(0.967) TCGA-CK-6746-01 8 27099968 27099968 A G STMN4 Missense_Mutation p.F19L 0.27 tolerated(0.24) benign(0.065) TCGA-CK-6746-01 8 28196673 28196673 G T PNOC Silent p.A81A 0.56 TCGA-CK-6746-01 8 28206257 28206257 G T ZNF395 Silent p.A507A 0.65 TCGA-CK-6746-01 8 28340957 28340957 C T FBXO16 Missense_Mutation p.A3T 0.29 deleterious(0) probably_damaging(0.921) TCGA-CK-6746-01 8 2944693 2944693 C T CSMD1 Missense_Mutation p.G2467D 0.63 probably_damaging(1) TCGA-CK-6746-01 8 36780146 36780146 C T KCNU1 Missense_Mutation p.T912M 0.36 tolerated(0.12) possibly_damaging(0.606) TCGA-CK-6746-01 8 37823459 37823459 A G ADRB3 Missense_Mutation p.W177R 0.20 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 8 3855549 3855549 C T CSMD1 Missense_Mutation p.A232T 0.31 possibly_damaging(0.721) TCGA-CK-6746-01 8 39079203 39079203 G A ADAM32 Silent p.L436L 0.24 TCGA-CK-6746-01 8 48508441 48508441 T C SPIDR Missense_Mutation p.V389A 0.25 deleterious(0.03) benign(0.164) TCGA-CK-6746-01 8 56436093 56436093 G T XKR4 Missense_Mutation p.E420D 0.58 tolerated(0.12) probably_damaging(0.989) TCGA-CK-6746-01 8 61778454 61778454 G - CHD7 Frame_Shift_Del p.D2988Mfs*3 0.27 TCGA-CK-6746-01 8 6735478 6735479 TG - DEFB1 5'UTR 0.52 TCGA-CK-6746-01 8 68087518 68087518 T - CSPP1 Intron 0.20 TCGA-CK-6746-01 8 70744434 70744434 G A SLCO5A1 Missense_Mutation p.R159C 0.29 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 8 77776510 77776510 C A ZFHX4 Nonsense_Mutation p.C3520* 0.09 TCGA-CK-6746-01 8 82391013 82391013 A - FABP4 3'UTR 0.14 TCGA-CK-6746-01 8 8560803 8560803 G - CLDN23 3'UTR 0.22 TCGA-CK-6746-01 8 87878786 87878786 T G CNBD1 Silent p.P21P 0.37 TCGA-CK-6746-01 8 88886074 88886074 A T DCAF4L2 Nonsense_Mutation p.Y42* 0.26 TCGA-CK-6746-01 8 90785024 90785024 C T RIPK2 Missense_Mutation p.A274V 0.29 tolerated(0.09) probably_damaging(0.986) TCGA-CK-6746-01 8 92983007 92983007 C T RUNX1T1 Missense_Mutation p.R484Q 0.28 tolerated(0.51) benign(0.372) TCGA-CK-6746-01 8 93074832 93074832 C T RUNX1T1 Intron 0.58 TCGA-CK-6746-01 8 94798484 94798484 G A TMEM67 Missense_Mutation p.R441H 0.54 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 8 95161000 95161000 A T CDH17 Nonsense_Mutation p.Y633* 0.57 TCGA-CK-6746-01 8 95789919 95789919 G A DPY19L4 Missense_Mutation p.V494M 0.25 tolerated(1) benign(0.104) TCGA-CK-6746-01 8 97247762 97247762 G A UQCRB 5'UTR 0.18 TCGA-CK-6746-01 8 98735234 98735234 C G MTDH Missense_Mutation p.T550S 0.63 tolerated(0.11) benign(0.007) TCGA-CK-6746-01 8 99961358 99961358 A G OSR2 Missense_Mutation p.N60D 0.62 tolerated_low_confidence(0.63) benign(0.017) TCGA-CK-6746-01 9 100079422 100079422 C T CCDC180 Nonsense_Mutation p.Q335* 0.40 TCGA-CK-6746-01 9 100403140 100403140 T C NCBP1 Silent p.S33S 0.39 TCGA-CK-6746-01 9 106880567 106880567 C T SMC2 Missense_Mutation p.A636V 0.37 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 9 107289056 107289056 A C OR13C4 Silent p.T145T 0.52 TCGA-CK-6746-01 9 111660792 111660793 - A IKBKAP Frame_Shift_Ins p.T785Yfs*28 0.31 TCGA-CK-6746-01 9 112899061 112899061 C T PALM2-AKAP2 Missense_Mutation p.R413C 0.43 deleterious(0.02) benign(0.241) TCGA-CK-6746-01 9 114151853 114151853 C T KIAA0368 Missense_Mutation p.V1322I 0.26 deleterious(0.04) probably_damaging(0.919) TCGA-CK-6746-01 9 114989832 114989832 T C PTBP3 Missense_Mutation p.Q442R 0.33 deleterious(0.01) benign(0.357) TCGA-CK-6746-01 9 115935731 115935731 A G FKBP15 Splice_Site p.X844_splice 0.11 TCGA-CK-6746-01 9 116267734 116267735 - G RGS3 Frame_Shift_Ins p.D307Gfs*40 0.31 TCGA-CK-6746-01 9 116769709 116769709 C T ZNF618 Silent p.H178H 0.53 TCGA-CK-6746-01 9 116930888 116930888 G T COL27A1 Silent p.A351A 0.41 TCGA-CK-6746-01 9 117087164 117087164 G A ORM1 Silent p.G141G 0.48 TCGA-CK-6746-01 9 123924448 123924448 G C CNTRL Missense_Mutation p.E1774D 0.44 possibly_damaging(0.65) TCGA-CK-6746-01 9 125681591 125681591 G T ZBTB26 Missense_Mutation p.P208H 0.42 deleterious(0.04) benign(0.007) TCGA-CK-6746-01 9 127216766 127216766 C T GPR144 Missense_Mutation p.P361L 0.50 tolerated(0.21) benign(0.005) TCGA-CK-6746-01 9 129458751 129458751 C T LMX1B 3'UTR 0.28 TCGA-CK-6746-01 9 129646909 129646909 T C ZBTB34 3'UTR 0.37 TCGA-CK-6746-01 9 130586661 130586661 C T ENG Silent p.P352P 0.35 TCGA-CK-6746-01 9 130587599 130587599 C T ENG Missense_Mutation p.A243T 0.43 tolerated(0.73) benign(0.001) TCGA-CK-6746-01 9 131403076 131403076 G A WDR34 Missense_Mutation p.A110V 0.39 tolerated(0.26) benign(0.104) TCGA-CK-6746-01 9 133307859 133307859 C T HMCN2 Silent p.G647G 0.41 TCGA-CK-6746-01 9 134381576 134381576 G A POMT1 Silent p.P66P 0.43 TCGA-CK-6746-01 9 135203586 135203586 T - SETX Frame_Shift_Del p.G1134Efs*24 0.25 TCGA-CK-6746-01 9 135785964 135785964 G - TSC1 Frame_Shift_Del p.R420Gfs*20 0.33 TCGA-CK-6746-01 9 137693828 137693829 - C COL5A1 Frame_Shift_Ins p.G997Rfs*17 0.41 TCGA-CK-6746-01 9 139290160 139290160 A G SNAPC4 Silent p.P80P 0.45 TCGA-CK-6746-01 9 139633919 139633919 C T LCN10 3'UTR 0.48 TCGA-CK-6746-01 9 139650931 139650931 C T LCN8 Intron 0.38 TCGA-CK-6746-01 9 139838548 139838548 C T FBXW5 5'UTR 0.37 TCGA-CK-6746-01 9 139944352 139944352 T C ENTPD2 Silent p.A373A 0.61 TCGA-CK-6746-01 9 140007741 140007741 T C DPP7 Splice_Site p.X208_splice 0.37 TCGA-CK-6746-01 9 140151284 140151285 - A NELFB Frame_Shift_Ins p.L128Tfs*7 0.33 TCGA-CK-6746-01 9 140175912 140175912 C - TOR4A 3'UTR 0.35 TCGA-CK-6746-01 9 140652329 140652329 T C EHMT1 Intron 0.36 TCGA-CK-6746-01 9 140671167 140671167 G A EHMT1 Missense_Mutation p.C630Y 0.39 deleterious(0) probably_damaging(0.99) TCGA-CK-6746-01 9 140685408 140685408 C A EHMT1 Missense_Mutation p.L831M 0.38 tolerated(0.22) possibly_damaging(0.797) TCGA-CK-6746-01 9 14307166 14307166 C T NFIB Nonsense_Mutation p.W128* 0.35 TCGA-CK-6746-01 9 14313535 14313535 C T NFIB 5'UTR 0.30 TCGA-CK-6746-01 9 14672854 14672854 G T ZDHHC21 Missense_Mutation p.P76H 0.35 deleterious(0.01) probably_damaging(0.948) TCGA-CK-6746-01 9 18770668 18770668 C T ADAMTSL1 Silent p.G762G 0.39 TCGA-CK-6746-01 9 19063160 19063160 T - HAUS6 Frame_Shift_Del p.N492Mfs*50 0.28 TCGA-CK-6746-01 9 20414337 20414337 G A MLLT3 Silent p.S169S 0.17 TCGA-CK-6746-01 9 215431 215431 G - C9orf66 5'UTR 0.44 TCGA-CK-6746-01 9 2643450 2643450 G A VLDLR Missense_Mutation p.G247S 0.43 tolerated(0.16) benign(0.005) TCGA-CK-6746-01 9 26997782 26997787 CAGTTC - LRRC19 In_Frame_Del p.W178_N179del 0.39 TCGA-CK-6746-01 9 2729503 2729503 T - KCNV2 Frame_Shift_Del p.F473Lfs*31 0.33 TCGA-CK-6746-01 9 32635664 32635664 G - TAF1L 5'UTR 0.50 TCGA-CK-6746-01 9 33472211 33472211 C T NOL6 Missense_Mutation p.R85H 0.48 deleterious(0) probably_damaging(0.985) TCGA-CK-6746-01 9 33932606 33932606 C T UBAP2 Missense_Mutation p.S710N 0.48 tolerated(0.52) unknown(0) TCGA-CK-6746-01 9 34618690 34618690 T C DCTN3 Missense_Mutation p.K55R 0.43 deleterious(0.02) possibly_damaging(0.582) TCGA-CK-6746-01 9 34621492 34621492 G - ARID3C Frame_Shift_Del p.P401Hfs*? 0.46 TCGA-CK-6746-01 9 34623621 34623621 G A ARID3C Silent p.R222R 0.61 TCGA-CK-6746-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.32 TCGA-CK-6746-01 9 35076445 35076445 A G FANCG Missense_Mutation p.C354R 0.40 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 9 35107832 35107832 G - FAM214B Frame_Shift_Del p.P147Hfs*50 0.31 TCGA-CK-6746-01 9 35548266 35548266 G - RUSC2 Frame_Shift_Del p.A585Pfs*62 0.52 TCGA-CK-6746-01 9 36112461 36112461 A - RECK Frame_Shift_Del p.N685Tfs*12 0.29 TCGA-CK-6746-01 9 36211606 36211608 AGA - CLTA In_Frame_Del p.E196del 0.50 TCGA-CK-6746-01 9 36217484 36217484 T C GNE Missense_Mutation p.I714V 0.36 tolerated_low_confidence(0.17) benign(0.023) TCGA-CK-6746-01 9 37425945 37425945 A G GRHPR Missense_Mutation p.M81V 0.39 tolerated(0.07) benign(0.099) TCGA-CK-6746-01 9 37537792 37537792 T - FBXO10 Frame_Shift_Del p.N245Tfs*12 0.32 TCGA-CK-6746-01 9 72755180 72755180 G A MAMDC2 Missense_Mutation p.A372T 0.59 tolerated(0.58) benign(0.009) TCGA-CK-6746-01 9 80880366 80880366 T G CEP78 Silent p.T569T 0.37 TCGA-CK-6746-01 9 8497268 8497268 A G PTPRD Missense_Mutation p.W775R 0.43 tolerated(0.07) probably_damaging(0.992) TCGA-CK-6746-01 9 8500812 8500812 A G PTPRD Silent p.H690H 0.35 TCGA-CK-6746-01 9 87570292 87570292 G A NTRK2 Missense_Mutation p.A678T 0.44 deleterious(0.01) possibly_damaging(0.655) TCGA-CK-6746-01 9 88292447 88292447 A G AGTPBP1 Silent p.L114L 0.51 TCGA-CK-6746-01 9 93976571 93976571 G A AUH 3'UTR 0.43 TCGA-CK-6746-01 9 98215823 98215823 C T PTCH1 Missense_Mutation p.G1129D 0.38 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 X 100183451 100183451 G A XKRX 5'UTR 0.53 TCGA-CK-6746-01 X 10165984 10165984 C T CLCN4 Silent p.A146A 0.40 TCGA-CK-6746-01 X 101911740 101911740 G A GPRASP1 Missense_Mutation p.A967T 0.47 tolerated(0.18) benign(0.003) TCGA-CK-6746-01 X 101969789 101969789 A G GPRASP2 5'UTR 0.08 TCGA-CK-6746-01 X 102003853 102003853 A G BHLHB9 5'UTR 0.42 TCGA-CK-6746-01 X 102931379 102931379 T C MORF4L2 Missense_Mutation p.M193V 0.38 tolerated(0.08) benign(0.228) TCGA-CK-6746-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.34 TCGA-CK-6746-01 X 105970371 105970371 G A RNF128 Silent p.P76P 0.39 TCGA-CK-6746-01 X 109695578 109695578 C A RGAG1 Missense_Mutation p.P578Q 0.42 deleterious(0) probably_damaging(0.95) TCGA-CK-6746-01 X 109943895 109943895 G A CHRDL1 Missense_Mutation p.A199V 0.46 tolerated(0.16) benign(0.198) TCGA-CK-6746-01 X 112065760 112065760 G T AMOT Missense_Mutation p.L199I 0.49 unknown(0) TCGA-CK-6746-01 X 11781098 11781098 A G MSL3 Missense_Mutation p.Y244C 0.49 tolerated(0.11) probably_damaging(0.962) TCGA-CK-6746-01 X 118708697 118708697 G A UBE2A Missense_Mutation p.R8H 0.41 deleterious(0) benign(0.057) TCGA-CK-6746-01 X 119394711 119394711 G A TMEM255A 3'UTR 0.46 TCGA-CK-6746-01 X 119737908 119737908 C T MCTS1 5'Flank 0.56 TCGA-CK-6746-01 X 125298563 125298564 - C DCAF12L2 Frame_Shift_Ins p.P449Afs*34 0.41 TCGA-CK-6746-01 X 128781742 128781742 G - APLN 3'UTR 0.29 TCGA-CK-6746-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.44 TCGA-CK-6746-01 X 130218650 130218650 C T ARHGAP36 Missense_Mutation p.R267C 0.41 deleterious(0) possibly_damaging(0.788) TCGA-CK-6746-01 X 131218574 131218574 G A FRMD7 Missense_Mutation p.R229C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 X 135956320 135956320 C - RBMX Frame_Shift_Del p.G386Efs*53 0.35 TCGA-CK-6746-01 X 13680919 13680929 AATAAAGAAGA - TCEANC Frame_Shift_Del p.N128Kfs*7 0.38 TCGA-CK-6746-01 X 138850461 138850461 A G ATP11C Silent p.T786T 0.39 TCGA-CK-6746-01 X 140270739 140270739 C - LDOC1 3'UTR 0.45 TCGA-CK-6746-01 X 1407701 1407701 G A CSF2RA Silent p.A131A 0.41 TCGA-CK-6746-01 X 144904687 144904687 G A SLITRK2 Silent p.R248R 0.41 TCGA-CK-6746-01 X 144909061 144909061 C T TMEM257 5'UTR 0.38 TCGA-CK-6746-01 X 148038006 148038006 T C AFF2 Missense_Mutation p.S811P 0.38 deleterious(0) probably_damaging(0.996) TCGA-CK-6746-01 X 149013166 149013166 C A MAGEA8 Silent p.S40S 0.41 TCGA-CK-6746-01 X 149638350 149638350 G A MAMLD1 Missense_Mutation p.V144M 0.45 tolerated(0.93) benign(0.029) TCGA-CK-6746-01 X 151806750 151806750 T C GABRQ Missense_Mutation p.F32L 0.40 tolerated_low_confidence(0.07) benign(0.438) TCGA-CK-6746-01 X 151900278 151900278 A C MAGEA12 Missense_Mutation p.L175V 0.24 tolerated(0.27) benign(0.007) TCGA-CK-6746-01 X 151900736 151900736 G A MAGEA12 Missense_Mutation p.A22V 0.34 tolerated(0.06) benign(0.349) TCGA-CK-6746-01 X 152228013 152228013 C T PNMA3 3'UTR 0.35 TCGA-CK-6746-01 X 152614375 152614375 T - ZNF275 3'UTR 0.25 TCGA-CK-6746-01 X 152858113 152858113 C T FAM58A Missense_Mutation p.A168T 0.41 deleterious(0) possibly_damaging(0.896) TCGA-CK-6746-01 X 152959013 152959013 C T SLC6A8 Silent p.G371G 0.35 TCGA-CK-6746-01 X 153184643 153184643 T A ARHGAP4 Missense_Mutation p.N299I 0.43 deleterious(0) probably_damaging(0.91) TCGA-CK-6746-01 X 153225597 153225597 G - HCFC1 Frame_Shift_Del p.P367Qfs*16 0.37 TCGA-CK-6746-01 X 153247455 153247455 C T TMEM187 5'UTR 0.43 TCGA-CK-6746-01 X 153556182 153556182 C T TKTL1 Intron 0.47 TCGA-CK-6746-01 X 153593614 153593614 G A FLNA Silent p.R527R 0.56 TCGA-CK-6746-01 X 153657077 153657077 G A ATP6AP1 Silent p.G13G 0.30 TCGA-CK-6746-01 X 153880306 153880306 C T CTAG2 3'UTR 0.46 TCGA-CK-6746-01 X 155171688 155171688 T A VAMP7 Missense_Mutation p.L223H 0.37 unknown(0) TCGA-CK-6746-01 X 155239693 155239693 A G IL9R Silent p.A395A 0.36 TCGA-CK-6746-01 X 1720103 1720103 C T AKAP17A Silent p.S568S 0.47 TCGA-CK-6746-01 X 19410502 19410502 T C MAP3K15 Missense_Mutation p.K762E 0.41 deleterious(0.01) possibly_damaging(0.856) TCGA-CK-6746-01 X 21875266 21875266 G - YY2 Frame_Shift_Del p.L224Yfs*18 0.29 TCGA-CK-6746-01 X 2408092 2408092 G - ZBED1 Frame_Shift_Del p.N224Tfs*10 0.32 TCGA-CK-6746-01 X 24521458 24521458 T A PDK3 Missense_Mutation p.L112Q 0.39 deleterious(0) probably_damaging(0.945) TCGA-CK-6746-01 X 27765444 27765444 G A DCAF8L2 Silent p.E144E 0.44 TCGA-CK-6746-01 X 2833610 2833610 C T ARSD Missense_Mutation p.M329I 0.42 deleterious(0) benign(0.307) TCGA-CK-6746-01 X 29973708 29973708 A G IL1RAPL1 Missense_Mutation p.Q621R 0.46 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-CK-6746-01 X 30260639 30260639 C A MAGEB4 Silent p.P129P 0.28 TCGA-CK-6746-01 X 31089399 31089399 C A FTHL17 3'UTR 0.40 TCGA-CK-6746-01 X 31224779 31224779 C T DMD Missense_Mutation p.R3190Q 0.48 probably_damaging(0.912) TCGA-CK-6746-01 X 34961691 34961691 G A FAM47B Missense_Mutation p.R248H 0.46 tolerated(0.44) benign(0.001) TCGA-CK-6746-01 X 34962133 34962133 C T FAM47B Silent p.P395P 0.33 TCGA-CK-6746-01 X 48378920 48378921 - G PORCN 3'UTR 0.25 TCGA-CK-6746-01 X 48763647 48763647 C T SLC35A2 Intron 0.31 TCGA-CK-6746-01 X 48935404 48935404 G T WDR45 Missense_Mutation p.H45N 0.47 tolerated(0.3) benign(0) TCGA-CK-6746-01 X 49067097 49067097 G T CACNA1F Missense_Mutation p.P1491T 0.42 deleterious(0) benign(0.246) TCGA-CK-6746-01 X 49958443 49958443 G A AKAP4 Silent p.S307S 0.25 TCGA-CK-6746-01 X 50378349 50378349 G A SHROOM4 Missense_Mutation p.R242C 0.42 tolerated(0.19) benign(0.394) TCGA-CK-6746-01 X 51150337 51150338 - C CXorf67 Frame_Shift_Ins p.A159Gfs*12 0.19 TCGA-CK-6746-01 X 53239601 53239601 C T KDM5C Missense_Mutation p.V581M 0.45 deleterious(0) probably_damaging(1) TCGA-CK-6746-01 X 53407629 53407629 T C SMC1A Missense_Mutation p.Q1177R 0.42 deleterious(0.03) benign(0.135) TCGA-CK-6746-01 X 53602132 53602132 C A HUWE1 Missense_Mutation p.G2027V 0.36 possibly_damaging(0.681) TCGA-CK-6746-01 X 54161425 54161425 G T FAM120C Silent p.P485P 0.43 TCGA-CK-6746-01 X 54209372 54209372 G A FAM120C Missense_Mutation p.P87L 0.30 deleterious_low_confidence(0) unknown(0) TCGA-CK-6746-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.31 TCGA-CK-6746-01 X 57622086 57622087 - A ZXDB 3'UTR 0.26 TCGA-CK-6746-01 X 64137730 64137730 C T ZC4H2 Missense_Mutation p.C203Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-CK-6746-01 X 66766503 66766503 T C AR Silent p.P505P 0.46 TCGA-CK-6746-01 X 69425058 69425058 G A DGAT2L6 3'UTR 0.29 TCGA-CK-6746-01 X 69615880 69615880 G T KIF4A Nonsense_Mutation p.E824* 0.48 TCGA-CK-6746-01 X 70147737 70147737 C G SLC7A3 Missense_Mutation p.E318D 0.38 tolerated(0.7) benign(0.008) TCGA-CK-6746-01 X 71357066 71357066 C T NHSL2 Nonsense_Mutation p.R295* 0.35 TCGA-CK-6746-01 X 73641460 73641460 T C SLC16A2 5'UTR 0.56 TCGA-CK-6746-01 X 76849275 76849275 A G ATRX Missense_Mutation p.W2001R 0.44 probably_damaging(0.998) TCGA-CK-6746-01 X 77218177 77218177 G A ATP7A Intron 0.44 TCGA-CK-6746-01 X 77387169 77387169 C T TAF9B Missense_Mutation p.A232T 0.41 tolerated(0.4) benign(0.001) TCGA-CK-6746-01 X 79699823 79699823 A - FAM46D 3'UTR 0.31 TCGA-CK-6746-01 X 79947430 79947430 C T BRWD3 Missense_Mutation p.E1125K 0.44 deleterious(0) probably_damaging(0.999) TCGA-CK-6746-01 X 79973197 79973197 A G BRWD3 Silent p.S702S 0.48 TCGA-CK-6746-01 X 80370622 80370623 - T HMGN5 Frame_Shift_Ins p.N125Kfs*2 0.25 TCGA-CK-6746-01 X 90690898 90690898 A G PABPC5 Missense_Mutation p.I108V 0.28 tolerated(0.66) benign(0.044) TCGA-CK-6746-01 X 92928230 92928230 G A NAP1L3 Missense_Mutation p.S25L 0.46 tolerated_low_confidence(0.13) probably_damaging(0.921) TCGA-CK-6746-01 X 92966019 92966019 A C FAM133A 3'UTR 0.38 TCGA-CK-6747-01 10 133931058 133931058 G A JAKMIP3 Missense_Mutation p.E205K 0.44 deleterious(0) probably_damaging(0.999) TCGA-CK-6747-01 10 14951099 14951101 CTT - DCLRE1C In_Frame_Del p.E462del 0.38 TCGA-CK-6747-01 10 293353 293353 G A ZMYND11 Missense_Mutation p.E392K 0.45 tolerated(0.18) possibly_damaging(0.574) TCGA-CK-6747-01 10 61835374 61835375 CA - ANK3 Frame_Shift_Del p.V1755Gfs*6 0.33 TCGA-CK-6747-01 10 72360296 72360296 C T PRF1 Silent p.A121A 0.43 TCGA-CK-6747-01 10 76979099 76979100 TC - VDAC2 Frame_Shift_Del p.S130Tfs*9 0.29 TCGA-CK-6747-01 10 94070923 94070925 GAT - MARCH5 In_Frame_Del p.D24del 0.34 TCGA-CK-6747-01 11 1093498 1093498 A G MUC2 Missense_Mutation p.T1773A 0.17 unknown(0) TCGA-CK-6747-01 11 126146058 126146058 A G FOXRED1 Silent p.G305G 0.08 TCGA-CK-6747-01 11 17191052 17191052 A G PIK3C2A Silent p.P79P 0.32 TCGA-CK-6747-01 11 61124085 61124087 CCA - CYB561A3 In_Frame_Del p.G51del 0.37 TCGA-CK-6747-01 11 64060652 64060652 C T KCNK4 Silent p.S54S 0.66 TCGA-CK-6747-01 11 70653194 70653194 C T SHANK2 Missense_Mutation p.V527M 0.54 deleterious(0) probably_damaging(0.985) TCGA-CK-6747-01 11 73575349 73575349 A G MRPL48 Silent p.E191E 0.17 TCGA-CK-6747-01 11 8969796 8969796 C A TMEM9B 3'UTR 0.56 TCGA-CK-6747-01 12 104134501 104134501 T C STAB2 Missense_Mutation p.C1950R 0.10 deleterious(0) possibly_damaging(0.646) TCGA-CK-6747-01 12 117290400 117290400 A G RNFT2 3'Flank 0.48 TCGA-CK-6747-01 12 121598721 121598721 C T P2RX7 Missense_Mutation p.T127M 0.41 deleterious(0.01) possibly_damaging(0.87) TCGA-CK-6747-01 12 40745481 40745481 C T LRRK2 Silent p.T2174T 0.42 TCGA-CK-6747-01 12 45567695 45567695 C T PLEKHA8P1 RNA 0.36 TCGA-CK-6747-01 12 48177917 48177919 CTT - HDAC7 In_Frame_Del p.E958del 0.11 TCGA-CK-6747-01 12 64609624 64609624 C - C12orf66 Frame_Shift_Del p.E119Kfs*50 0.18 TCGA-CK-6747-01 12 76424573 76424578 GCTGCG - PHLDA1 In_Frame_Del p.P315_Q316del 0.26 TCGA-CK-6747-01 13 112724064 112724064 G A SOX1 3'UTR 0.34 TCGA-CK-6747-01 13 33017222 33017223 - T N4BP2L2 Frame_Shift_Ins p.N484Kfs*2 0.24 TCGA-CK-6747-01 13 36888472 36888472 G A SPG20 Missense_Mutation p.R459W 0.40 deleterious(0) probably_damaging(0.981) TCGA-CK-6747-01 13 37011975 37011975 C T CCNA1 Silent p.L169L 0.54 TCGA-CK-6747-01 14 101488430 101488430 G A MIR379 RNA 0.29 TCGA-CK-6747-01 14 103871448 103871449 CT - MARK3 Frame_Shift_Del p.R31Yfs*9 0.34 TCGA-CK-6747-01 14 105818795 105818797 CTC - PACS2 In_Frame_Del p.S97del 0.36 TCGA-CK-6747-01 14 21991730 21991730 C T SALL2 Missense_Mutation p.R711Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-CK-6747-01 14 23517671 23517671 C T CDH24 Missense_Mutation p.V660M 0.50 tolerated(0.09) benign(0.342) TCGA-CK-6747-01 14 23842532 23842532 C T IL25 Missense_Mutation p.R69C 0.54 deleterious(0.05) benign(0.326) TCGA-CK-6747-01 14 55818614 55818616 AAA - FBXO34 In_Frame_Del p.K503del 0.33 TCGA-CK-6747-01 14 77332341 77332341 G A C14orf166B Missense_Mutation p.V428M 0.47 tolerated(0.23) benign(0.001) TCGA-CK-6747-01 14 96129928 96129929 AG - TCL6 RNA 0.30 TCGA-CK-6747-01 15 33952468 33952468 G A RYR3 Missense_Mutation p.R1489Q 0.55 probably_damaging(0.988) TCGA-CK-6747-01 15 43348606 43348606 T A UBR1 Missense_Mutation p.D406V 0.39 deleterious(0) possibly_damaging(0.739) TCGA-CK-6747-01 15 62202429 62202429 G A VPS13C Missense_Mutation p.P2931S 0.10 tolerated(0.3) benign(0.129) TCGA-CK-6747-01 15 74427610 74427610 G A ISLR2 3'UTR 0.28 TCGA-CK-6747-01 15 75013562 75013562 C T CYP1A1 Missense_Mutation p.V382I 0.54 tolerated(0.19) benign(0.044) TCGA-CK-6747-01 15 79327484 79327484 G A RASGRF1 Missense_Mutation p.T316M 0.54 deleterious(0) probably_damaging(0.998) TCGA-CK-6747-01 16 30196692 30196692 C T CORO1A Silent p.S54S 0.32 TCGA-CK-6747-01 16 31926784 31926784 A G ZNF267 Missense_Mutation p.E405G 0.08 deleterious(0.01) benign(0.068) TCGA-CK-6747-01 16 4247873 4247873 C T SRL Silent p.P101P 0.39 TCGA-CK-6747-01 16 4745140 4745142 AGA - NUDT16L1 In_Frame_Del p.K201del 0.54 TCGA-CK-6747-01 16 4940185 4940187 CTT - PPL In_Frame_Del p.K771del 0.33 TCGA-CK-6747-01 16 67289812 67289812 C T SLC9A5 Missense_Mutation p.A297V 0.43 tolerated(0.44) benign(0.003) TCGA-CK-6747-01 16 68846118 68846119 CA - CDH1 Frame_Shift_Del p.T364Sfs*3 0.22 TCGA-CK-6747-01 16 70516631 70516633 CCT - COG4 Splice_Site p.X640_splice 0.48 TCGA-CK-6747-01 16 71171178 71171178 C T HYDIN Missense_Mutation p.E307K 0.38 probably_damaging(0.956) TCGA-CK-6747-01 16 75564946 75564946 C T CHST5 5'UTR 0.39 TCGA-CK-6747-01 16 81181854 81181854 C T PKD1L2 RNA 0.34 TCGA-CK-6747-01 16 815715 815715 C T MSLN Missense_Mutation p.R274C 0.35 tolerated(0.07) possibly_damaging(0.901) TCGA-CK-6747-01 16 84120991 84120991 C A MBTPS1 Missense_Mutation p.R369L 0.47 deleterious(0.02) probably_damaging(0.932) TCGA-CK-6747-01 16 88500292 88500292 G A ZNF469 Silent p.S2110S 0.62 TCGA-CK-6747-01 16 90160870 90160870 G A TUBB8P7 RNA 0.43 TCGA-CK-6747-01 17 1012319 1012319 G A ABR Intron 0.50 TCGA-CK-6747-01 17 10263486 10263486 G A MYH13 Silent p.I175I 0.08 TCGA-CK-6747-01 17 13399968 13399968 G A HS3ST3A1 Missense_Mutation p.T256M 0.18 deleterious(0.01) benign(0.242) TCGA-CK-6747-01 17 17722985 17722985 G A SREBF1 Missense_Mutation p.P223L 0.57 tolerated(0.4) benign(0.002) TCGA-CK-6747-01 17 29226288 29226288 T C TEFM Missense_Mutation p.M328V 0.15 tolerated(0.31) benign(0.006) TCGA-CK-6747-01 17 3181738 3181738 G A OR3A2 Silent p.N164N 0.41 TCGA-CK-6747-01 17 3195519 3195519 C T OR3A1 Missense_Mutation p.A120T 0.27 deleterious(0.03) benign(0.133) TCGA-CK-6747-01 17 40120627 40120629 AGA - CNP In_Frame_Del p.K183del 0.67 TCGA-CK-6747-01 17 40259649 40259649 C T DHX58 Missense_Mutation p.E324K 0.43 deleterious(0.02) probably_damaging(0.963) TCGA-CK-6747-01 17 40940190 40940191 TT - WNK4 Frame_Shift_Del p.S637Pfs*14 0.32 TCGA-CK-6747-01 17 41738545 41738545 T C MEOX1 Missense_Mutation p.S120G 0.13 tolerated(0.24) benign(0.07) TCGA-CK-6747-01 17 43227526 43227531 GGAGCT - HEXIM1 In_Frame_Del p.E328_L329del 0.30 TCGA-CK-6747-01 17 5462874 5462874 G T NLRP1 Missense_Mutation p.A381D 0.39 deleterious(0.01) probably_damaging(0.916) TCGA-CK-6747-01 17 56437565 56437566 CA - RNF43 Frame_Shift_Del p.V299Gfs*143 0.48 TCGA-CK-6747-01 17 70118924 70118926 AAG - SOX9 In_Frame_Del p.K167del 0.81 TCGA-CK-6747-01 17 71282353 71282353 T C CDC42EP4 Missense_Mutation p.E96G 0.09 deleterious(0.03) benign(0) TCGA-CK-6747-01 17 74936836 74936836 C T MGAT5B Missense_Mutation p.A594V 0.17 deleterious(0.04) benign(0.049) TCGA-CK-6747-01 17 7579706 7579708 GTT - TP53 In_Frame_Del p.N30del 0.57 TCGA-CK-6747-01 17 9830078 9830078 G A GAS7 Silent p.S298S 0.46 TCGA-CK-6747-01 18 19762739 19762740 AA - GATA6 Frame_Shift_Del p.K485Rfs*11 0.31 TCGA-CK-6747-01 18 21043044 21043044 G A RIOK3 Splice_Site p.X60_splice 0.39 TCGA-CK-6747-01 18 2666192 2666194 ACA - SMCHD1 In_Frame_Del p.T77del 0.30 TCGA-CK-6747-01 18 30926369 30926370 TT - CCDC178 Frame_Shift_Del p.K155Vfs*20 0.33 TCGA-CK-6747-01 19 33167258 33167258 C T RGS9BP Missense_Mutation p.S30L 0.44 deleterious(0.03) possibly_damaging(0.607) TCGA-CK-6747-01 19 38125902 38125902 G A ZFP30 Nonsense_Mutation p.R514* 0.48 TCGA-CK-6747-01 19 39016012 39016012 G A RYR1 Missense_Mutation p.R3499Q 0.35 benign(0.029) TCGA-CK-6747-01 19 40366042 40366042 C T FCGBP Missense_Mutation p.R4731Q 0.37 possibly_damaging(0.864) TCGA-CK-6747-01 19 42584799 42584799 C T ZNF574 Nonsense_Mutation p.R681* 0.32 TCGA-CK-6747-01 19 49539504 49539504 C T CGB1 Silent p.P22P 0.27 TCGA-CK-6747-01 19 51021777 51021777 G A LRRC4B Missense_Mutation p.T398M 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-CK-6747-01 19 54695721 54695722 AG - TSEN34 Frame_Shift_Del p.A133Qfs*16 0.41 TCGA-CK-6747-01 19 58438323 58438323 C T ZNF418 Missense_Mutation p.R409Q 0.47 tolerated(0.72) benign(0.001) TCGA-CK-6747-01 19 58858351 58858351 C A A1BG 3'UTR 0.32 TCGA-CK-6747-01 19 6707823 6707823 C T C3 Missense_Mutation p.A655T 0.34 tolerated(0.36) benign(0.002) TCGA-CK-6747-01 19 8191395 8191395 G T FBN3 Silent p.T837T 0.41 TCGA-CK-6747-01 1 10166589 10166589 G A UBE4B Missense_Mutation p.A382T 0.33 tolerated_low_confidence(0.19) possibly_damaging(0.499) TCGA-CK-6747-01 1 110735255 110735255 G A SLC6A17 Missense_Mutation p.V412M 0.45 tolerated(0.1) probably_damaging(0.939) TCGA-CK-6747-01 1 152190996 152190996 G A HRNR Missense_Mutation p.R1037C 0.39 unknown(0) TCGA-CK-6747-01 1 152193213 152193213 G A HRNR Nonsense_Mutation p.R298* 0.37 TCGA-CK-6747-01 1 154987965 154987967 GAA - ZBTB7B In_Frame_Del p.E315del 0.42 TCGA-CK-6747-01 1 155887376 155887381 GGGGCT - KIAA0907 In_Frame_Del p.Q450_P451del 0.21 TCGA-CK-6747-01 1 158817531 158817531 A G MNDA Missense_Mutation p.K334R 0.41 tolerated(0.51) benign(0.057) TCGA-CK-6747-01 1 160100371 160100371 G A ATP1A2 Missense_Mutation p.R604Q 0.31 tolerated(0.09) possibly_damaging(0.904) TCGA-CK-6747-01 1 171751192 171751192 T G METTL13 Missense_Mutation p.F29V 0.28 deleterious(0) probably_damaging(0.984) TCGA-CK-6747-01 1 174418240 174418243 CTGT - GPR52 Frame_Shift_Del p.S332Rfs*10 0.34 TCGA-CK-6747-01 1 179983429 179983431 AGA - CEP350 In_Frame_Del p.K616del 0.31 TCGA-CK-6747-01 1 217947823 217947823 G A SPATA17 Missense_Mutation p.A223T 0.50 tolerated(0.45) benign(0.004) TCGA-CK-6747-01 1 229438687 229438687 G A RAB4A Missense_Mutation p.R207H 0.62 tolerated(0.13) benign(0.417) TCGA-CK-6747-01 1 241663822 241663822 C A FH Silent p.V435V 0.39 TCGA-CK-6747-01 1 247901992 247901997 GCTTTG CCTTT OR14K1 Frame_Shift_Del p.A26Pfs*6 0.27 TCGA-CK-6747-01 1 247902746 247902746 C A OR14K1 Missense_Mutation p.S277Y 0.35 deleterious(0) possibly_damaging(0.907) TCGA-CK-6747-01 1 27100935 27100939 CCCCA - ARID1A Frame_Shift_Del p.P1406Rfs*37 0.52 TCGA-CK-6747-01 1 32798623 32798625 AGG - HDAC1 In_Frame_Del p.E478del 0.41 TCGA-CK-6747-01 1 37291324 37291324 C T GRIK3 Missense_Mutation p.R545Q 0.33 deleterious(0.01) possibly_damaging(0.883) TCGA-CK-6747-01 1 52822109 52822109 G A CC2D1B Silent p.C634C 0.29 TCGA-CK-6747-01 1 67890659 67890662 AACT - SERBP1 Splice_Site p.X202_splice 0.37 TCGA-CK-6747-01 1 762651 762651 C T LINC00115 RNA 0.42 TCGA-CK-6747-01 20 49225025 49225025 G A FAM65C Missense_Mutation p.T282M 0.52 deleterious(0.04) possibly_damaging(0.515) TCGA-CK-6747-01 20 62321727 62321729 CTT - RTEL1 In_Frame_Del p.F808del 0.50 TCGA-CK-6747-01 22 19776384 19776384 G A GNB1L Missense_Mutation p.R278C 0.24 deleterious(0) probably_damaging(1) TCGA-CK-6747-01 22 22890734 22890734 G A PRAME Missense_Mutation p.H429Y 0.56 deleterious(0.02) benign(0.412) TCGA-CK-6747-01 22 29935350 29935350 G A THOC5 Missense_Mutation p.R190C 0.52 deleterious(0.02) benign(0.009) TCGA-CK-6747-01 22 37325716 37325716 C A CSF2RB Silent p.A195A 0.37 TCGA-CK-6747-01 22 41077618 41077618 C T MCHR1 Missense_Mutation p.R319W 0.54 tolerated(0.1) probably_damaging(0.993) TCGA-CK-6747-01 22 44107486 44107486 T C EFCAB6 Silent p.E300E 0.12 TCGA-CK-6747-01 22 45728391 45728394 TCTT - FAM118A Frame_Shift_Del p.L248Tfs*16 0.31 TCGA-CK-6747-01 22 50882646 50882648 AGA - PPP6R2 In_Frame_Del p.E925del 0.36 TCGA-CK-6747-01 2 130953942 130953942 G A TUBA3E Silent p.R2R 0.36 TCGA-CK-6747-01 2 148657041 148657041 A - ACVR2A Frame_Shift_Del p.D96Tfs*54 0.49 TCGA-CK-6747-01 2 152394477 152394477 T A NEB Missense_Mutation p.E7004V 0.43 probably_damaging(0.915) TCGA-CK-6747-01 2 166848128 166848128 C T SCN1A Missense_Mutation p.R1886Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-CK-6747-01 2 174820543 174820547 GACCA - SP3 Frame_Shift_Del p.G232Sfs*22 0.33 TCGA-CK-6747-01 2 175202158 175202158 G A SP9 Missense_Mutation p.G449S 0.53 tolerated_low_confidence(0.1) unknown(0) TCGA-CK-6747-01 2 177036879 177036879 C T HOXD3 Silent p.A392A 0.41 TCGA-CK-6747-01 2 203332319 203332319 C T BMPR2 Nonsense_Mutation p.Q109* 0.40 TCGA-CK-6747-01 2 209190006 209190006 C T PIKFYVE Missense_Mutation p.T824I 0.29 deleterious(0) probably_damaging(0.976) TCGA-CK-6747-01 2 238285677 238285677 G A COL6A3 Silent p.I936I 0.51 TCGA-CK-6747-01 2 24431125 24431127 CTT - ITSN2 In_Frame_Del p.K1553del 0.30 TCGA-CK-6747-01 2 3691601 3691601 T C COLEC11 Missense_Mutation p.Y251H 0.08 tolerated(0.23) benign(0.085) TCGA-CK-6747-01 2 54843412 54843414 GTG - SPTBN1 In_Frame_Del p.W182del 0.34 TCGA-CK-6747-01 2 54870199 54870199 G A SPTBN1 Nonsense_Mutation p.W1313* 0.30 TCGA-CK-6747-01 2 63349152 63349152 C T WDPCP Missense_Mutation p.G744S 0.33 deleterious(0.01) benign(0.198) TCGA-CK-6747-01 3 121643200 121643200 G T SLC15A2 Silent p.G335G 0.43 TCGA-CK-6747-01 3 122090587 122090587 C T CCDC58 Missense_Mutation p.V38I 0.35 tolerated(0.7) benign(0.026) TCGA-CK-6747-01 3 124515542 124515542 C T ITGB5 Silent p.T462T 0.32 TCGA-CK-6747-01 3 137787061 137787061 G A DZIP1L Silent p.S588S 0.39 TCGA-CK-6747-01 3 142720499 142720501 AGA - U2SURP In_Frame_Del p.K11del 0.33 TCGA-CK-6747-01 3 151045761 151045761 T G P2RY13 3'UTR 0.39 TCGA-CK-6747-01 3 171323157 171323157 C G PLD1 Missense_Mutation p.V978L 0.45 tolerated(0.1) benign(0.391) TCGA-CK-6747-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.37 deleterious(0.02) probably_damaging(0.959) TCGA-CK-6747-01 3 183994347 183994347 G A ECE2 Intron 0.39 TCGA-CK-6747-01 3 27472976 27472978 AGA - SLC4A7 In_Frame_Del p.S312del 0.41 TCGA-CK-6747-01 3 30045471 30045474 TTGT - RBMS3 3'UTR 0.60 TCGA-CK-6747-01 3 44975392 44975392 G A ZDHHC3 Silent p.F172F 0.39 TCGA-CK-6747-01 3 47450934 47450935 TA - PTPN23 Frame_Shift_Del p.Y609* 0.27 TCGA-CK-6747-01 3 48630626 48630628 GAA - COL7A1 In_Frame_Del p.F197del 0.38 TCGA-CK-6747-01 3 50143013 50143014 TG - RBM5 Frame_Shift_Del p.V243Gfs*18 0.23 TCGA-CK-6747-01 3 63264181 63264181 T A SYNPR 5'UTR 0.40 TCGA-CK-6747-01 4 122250641 122250642 TT - QRFPR Frame_Shift_Del p.K375Vfs*18 0.27 TCGA-CK-6747-01 4 1379797 1379797 G A UVSSA 3'UTR 0.22 TCGA-CK-6747-01 4 170321765 170321765 G A NEK1 Silent p.C1207C 0.42 TCGA-CK-6747-01 4 177109270 177109270 G A SPATA4 Missense_Mutation p.P269S 0.31 tolerated(1) benign(0.001) TCGA-CK-6747-01 4 36115883 36115885 TTC - ARAP2 In_Frame_Del p.E1355del 0.38 TCGA-CK-6747-01 4 39435933 39435933 C T KLB Missense_Mutation p.S310L 0.44 tolerated(0.61) benign(0.014) TCGA-CK-6747-01 4 40045011 40045011 G A RP11-333E13.4 RNA 0.32 TCGA-CK-6747-01 4 88766449 88766449 C T MEPE Silent p.G143G 0.33 TCGA-CK-6747-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.44 TCGA-CK-6747-01 5 122685640 122685640 G A CEP120 Silent p.N908N 0.34 TCGA-CK-6747-01 5 140481562 140481562 C T PCDHB3 Silent p.D443D 0.31 TCGA-CK-6747-01 5 140536978 140536978 G A PCDHB17 Missense_Mutation p.A468T 0.45 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-CK-6747-01 5 150922506 150922506 G A FAT2 Missense_Mutation p.R2728W 0.34 possibly_damaging(0.773) TCGA-CK-6747-01 5 157158465 157158469 AAGTT - THG1L Frame_Shift_Del p.V7Gfs*36 0.29 TCGA-CK-6747-01 5 175110636 175110636 C T HRH2 Missense_Mutation p.R134W 0.42 deleterious(0) probably_damaging(1) TCGA-CK-6747-01 5 176718994 176718996 AAG - NSD1 In_Frame_Del p.K2102del 0.48 TCGA-CK-6747-01 5 24505344 24505344 G A CDH10 Missense_Mutation p.R424C 0.23 deleterious(0.01) benign(0.439) TCGA-CK-6747-01 5 37158347 37158347 T C C5orf42 Missense_Mutation p.I2597M 0.36 tolerated(0.14) benign(0.007) TCGA-CK-6747-01 5 59895033 59895033 G T DEPDC1B Missense_Mutation p.R433S 0.44 tolerated(0.11) benign(0.012) TCGA-CK-6747-01 5 75886318 75886318 G A IQGAP2 Silent p.A242A 0.43 TCGA-CK-6747-01 5 98115719 98115721 ATA - RGMB In_Frame_Del p.N234del 0.59 TCGA-CK-6747-01 6 107019900 107019900 G A RTN4IP1 Nonsense_Mutation p.R388* 0.08 TCGA-CK-6747-01 6 112463444 112463444 C T LAMA4 Silent p.S848S 0.29 TCGA-CK-6747-01 6 121768112 121768112 C T GJA1 Missense_Mutation p.A40V 0.37 deleterious(0) probably_damaging(0.999) TCGA-CK-6747-01 6 138754164 138754164 T G NHSL1 Missense_Mutation p.S444R 0.40 tolerated(0.18) benign(0.261) TCGA-CK-6747-01 6 146720536 146720536 C T GRM1 Silent p.I787I 0.12 TCGA-CK-6747-01 6 157502289 157502290 AA - ARID1B Frame_Shift_Del p.K1108Rfs*9 0.37 TCGA-CK-6747-01 6 160198368 160198370 GAA - ACAT2 In_Frame_Del p.K266del 0.42 TCGA-CK-6747-01 6 29455553 29455553 G C MAS1L Missense_Mutation p.L43V 0.32 deleterious_low_confidence(0.03) benign(0.364) TCGA-CK-6747-01 6 30043598 30043598 G C RNF39 5'UTR 0.43 TCGA-CK-6747-01 6 30153935 30153936 CA - TRIM26 Frame_Shift_Del p.V446Efs*33 0.35 TCGA-CK-6747-01 6 30574403 30574405 TTC - PPP1R10 In_Frame_Del p.K159del 0.41 TCGA-CK-6747-01 6 31594863 31594863 C A PRRC2A Missense_Mutation p.A393E 0.40 unknown(0) TCGA-CK-6747-01 6 37623639 37623639 G A MDGA1 Missense_Mutation p.T139M 0.32 deleterious(0) probably_damaging(0.999) TCGA-CK-6747-01 6 56481343 56481343 G A DST Intron 0.30 TCGA-CK-6747-01 6 88763698 88763698 C T SPACA1 Silent p.F81F 0.37 TCGA-CK-6747-01 6 90577648 90577648 C T CASP8AP2 RNA 0.39 TCGA-CK-6747-01 7 102079550 102079550 G A ORAI2 Silent p.S49S 0.40 TCGA-CK-6747-01 7 135279431 135279433 CTC - NUP205 In_Frame_Del p.P657del 0.38 TCGA-CK-6747-01 7 140453155 140453155 C T BRAF Missense_Mutation p.D594N 0.41 deleterious(0) possibly_damaging(0.803) TCGA-CK-6747-01 7 2275155 2275157 GAA - FTSJ2 In_Frame_Del p.L114del 0.50 TCGA-CK-6747-01 7 6465690 6465690 G T DAGLB Missense_Mutation p.H329N 0.32 tolerated(0.36) possibly_damaging(0.828) TCGA-CK-6747-01 7 76239310 76239312 TTC - POMZP3 3'UTR 0.37 TCGA-CK-6747-01 8 109797174 109797174 C A TMEM74 Missense_Mutation p.A52S 0.25 tolerated(0.2) benign(0.015) TCGA-CK-6747-01 8 141678498 141678498 G - PTK2 Frame_Shift_Del p.P925Lfs*17 0.32 TCGA-CK-6747-01 8 29120591 29120591 G A KIF13B 5'Flank 0.25 TCGA-CK-6747-01 8 39442157 39442157 G T ADAM18 Missense_Mutation p.A6S 0.43 tolerated(0.79) possibly_damaging(0.84) TCGA-CK-6747-01 8 59060360 59060360 T A FAM110B 3'UTR 0.32 TCGA-CK-6747-01 8 68165720 68165721 TT - ARFGEF1 Frame_Shift_Del p.K888Rfs*10 0.27 TCGA-CK-6747-01 8 71593290 71593290 C T XKR9 5'UTR 0.29 TCGA-CK-6747-01 8 77775731 77775731 C A ZFHX4 Missense_Mutation p.Q3261K 0.34 probably_damaging(0.915) TCGA-CK-6747-01 8 87487056 87487058 TCC - RMDN1 In_Frame_Del p.E295del 0.33 TCGA-CK-6747-01 8 99140703 99140703 C T POP1 Nonsense_Mutation p.R141* 0.39 TCGA-CK-6747-01 9 133333935 133333935 C T ASS1 Missense_Mutation p.R108W 0.50 deleterious(0.04) benign(0.009) TCGA-CK-6747-01 9 32500928 32500928 T C DDX58 Missense_Mutation p.Q39R 0.10 deleterious(0.03) possibly_damaging(0.652) TCGA-CK-6747-01 9 32526101 32526101 G A DDX58 Missense_Mutation p.P22S 0.26 tolerated(0.05) probably_damaging(1) TCGA-CK-6747-01 9 33442453 33442453 C T AQP3 Missense_Mutation p.V186I 0.39 tolerated(0.47) benign(0.011) TCGA-CK-6747-01 9 34343315 34343315 C T NUDT2 Silent p.L107L 0.40 TCGA-CK-6747-01 9 72659585 72659586 CT - MAMDC2 Frame_Shift_Del p.L42Afs*6 0.26 TCGA-CK-6747-01 9 77400899 77400899 G A TRPM6 Missense_Mutation p.A937V 0.42 tolerated(0.24) benign(0.127) TCGA-CK-6747-01 9 94821497 94821498 CT - SPTLC1 Frame_Shift_Del p.E218Afs*44 0.27 TCGA-CK-6747-01 9 94871105 94871107 TTC - SPTLC1 In_Frame_Del p.E59del 0.33 TCGA-CK-6747-01 9 98011462 98011462 C T FANCC Missense_Mutation p.V38M 0.50 deleterious(0.05) benign(0.011) TCGA-CK-6747-01 X 10094286 10094286 A C WWC3 Silent p.T682T 0.32 TCGA-CK-6747-01 X 118604373 118604373 C A SLC25A5 Silent p.I212I 0.37 TCGA-CK-6747-01 X 120182025 120182025 G C GLUD2 Missense_Mutation p.A163P 0.45 deleterious(0) probably_damaging(0.997) TCGA-CK-6747-01 X 123526087 123526087 G A TENM1 Nonsense_Mutation p.R1835* 0.45 TCGA-CK-6747-01 X 124097604 124097604 T C TENM1 5'UTR 0.33 TCGA-CK-6747-01 X 128657177 128657179 CTT - SMARCA1 In_Frame_Del p.K57del 0.32 TCGA-CK-6747-01 X 138612930 138612930 C T F9 Missense_Mutation p.R3C 0.42 tolerated_low_confidence(0.19) benign(0) TCGA-CK-6747-01 X 153031725 153031726 CT - PLXNB3 Frame_Shift_Del p.S21Ffs*53 0.36 TCGA-CK-6747-01 X 153191667 153191667 C T ARHGAP4 5'UTR 0.43 TCGA-CK-6747-01 X 153219634 153219634 C T HCFC1 Missense_Mutation p.A1406T 0.34 tolerated_low_confidence(0.82) benign(0.001) TCGA-CK-6747-01 X 15415649 15415649 G A PIR Silent p.P205P 0.45 TCGA-CK-6747-01 X 19968894 19968894 A - CXorf23 Frame_Shift_Del p.H575Tfs*2 0.32 TCGA-CK-6747-01 X 3261724 3261724 C T MXRA5 Missense_Mutation p.A51T 0.37 deleterious(0.02) benign(0.1) TCGA-CK-6747-01 X 47308790 47308790 C T ZNF41 Missense_Mutation p.E127K 0.44 tolerated(0.14) benign(0.004) TCGA-CK-6747-01 X 50378665 50378665 G A SHROOM4 Silent p.D136D 0.48 TCGA-CK-6747-01 X 54784007 54784007 G A ITIH6 Nonsense_Mutation p.R834* 0.38 TCGA-CK-6747-01 X 63411496 63411497 CT - AMER1 Frame_Shift_Del p.E557Gfs*22 0.30 TCGA-CK-6747-01 X 72297601 72297601 C A PABPC1L2A 3'UTR 0.41 TCGA-CK-6748-01 10 50085181 50085181 A G WDFY4 Silent p.E2368E 0.12 TCGA-CK-6748-01 10 74695325 74695325 A G PLA2G12B 3'UTR 0.16 TCGA-CK-6748-01 11 101937340 101937340 T A C11orf70 Missense_Mutation p.D131E 0.74 tolerated(0.06) possibly_damaging(0.821) TCGA-CK-6748-01 11 108168026 108168027 - T ATM Frame_Shift_Ins p.G1642Wfs*23 0.43 TCGA-CK-6748-01 11 124750426 124750426 C T ROBO3 Silent p.G1357G 0.76 TCGA-CK-6748-01 11 2869032 2869032 C T KCNQ1 Silent p.T610T 0.20 TCGA-CK-6748-01 11 30915845 30915845 C T DCDC1 Missense_Mutation p.E1615K 0.22 tolerated(0.15) possibly_damaging(0.502) TCGA-CK-6748-01 11 46419277 46419277 T C AMBRA1 Missense_Mutation p.Q1117R 0.24 tolerated_low_confidence(0.25) benign(0.004) TCGA-CK-6748-01 12 109687800 109687800 C T ACACB Missense_Mutation p.T1894M 0.24 deleterious(0.02) benign(0.178) TCGA-CK-6748-01 12 23728669 23728669 T C SOX5 Missense_Mutation p.N423S 0.20 tolerated(1) benign(0.001) TCGA-CK-6748-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.34 deleterious(0) benign(0.361) TCGA-CK-6748-01 12 74933347 74933348 AG - ATXN7L3B 3'UTR 0.22 TCGA-CK-6748-01 12 96676323 96676323 G T CDK17 Silent p.R474R 0.52 TCGA-CK-6748-01 13 37679379 37679379 G A CSNK1A1L Silent p.S5S 0.68 TCGA-CK-6748-01 14 107199083 107199083 C T IGHV3-72 Missense_Mutation p.R69H 0.39 tolerated_low_confidence(0.51) benign(0.386) TCGA-CK-6748-01 14 24777021 24777021 C T CIDEB Intron 0.44 TCGA-CK-6748-01 14 97022604 97022604 C T PAPOLA Missense_Mutation p.R620C 0.26 tolerated(0.31) benign(0.001) TCGA-CK-6748-01 15 39546904 39546904 G A C15orf54 3'UTR 0.40 TCGA-CK-6748-01 16 2011523 2011523 A G NDUFB10 Missense_Mutation p.I99V 0.22 tolerated(0.24) possibly_damaging(0.768) TCGA-CK-6748-01 16 2104304 2104304 G A TSC2 Missense_Mutation p.R115H 0.31 tolerated(0.07) benign(0.009) TCGA-CK-6748-01 16 33647438 33647438 G A RP11-812E19.9 Silent p.S54S 0.19 TCGA-CK-6748-01 16 4242604 4242604 G T SRL Missense_Mutation p.N324K 0.06 tolerated(0.34) probably_damaging(0.999) TCGA-CK-6748-01 16 85141693 85141693 C A FAM92B Nonsense_Mutation p.E90* 0.31 TCGA-CK-6748-01 16 8987734 8987734 T C USP7 3'UTR 0.62 TCGA-CK-6748-01 17 16725690 16725690 C T AC022596.6 RNA 0.32 TCGA-CK-6748-01 17 34895091 34895091 A T PIGW 3'Flank 0.24 TCGA-CK-6748-01 17 35300397 35300397 C A LHX1 Missense_Mutation p.P397H 0.59 deleterious(0) possibly_damaging(0.792) TCGA-CK-6748-01 17 36720408 36720408 G A SRCIN1 Nonsense_Mutation p.R163* 0.34 TCGA-CK-6748-01 17 39389175 39389175 G T KRTAP9-3 Missense_Mutation p.R141M 0.29 deleterious(0) probably_damaging(0.991) TCGA-CK-6748-01 17 65040836 65040836 C T CACNG1 Silent p.I20I 0.46 TCGA-CK-6748-01 18 30846889 30846889 G T CCDC178 Missense_Mutation p.T467N 0.26 deleterious(0.01) benign(0.152) TCGA-CK-6748-01 19 2416593 2416593 C T TMPRSS9 Silent p.G567G 0.23 TCGA-CK-6748-01 19 50365667 50365667 C T PNKP Silent p.K330K 0.20 TCGA-CK-6748-01 19 51470530 51470530 G A KLK6 Missense_Mutation p.T31I 0.51 tolerated(0.05) benign(0.096) TCGA-CK-6748-01 1 12711251 12711251 G A AADACL4 Missense_Mutation p.R93H 0.32 tolerated(1) benign(0.002) TCGA-CK-6748-01 1 153579969 153579969 G C S100A16 3'UTR 0.30 TCGA-CK-6748-01 1 154316374 154316374 C T ATP8B2 Silent p.Y621Y 0.27 TCGA-CK-6748-01 1 155058945 155058945 A G EFNA3 Missense_Mutation p.T215A 0.08 tolerated(0.17) benign(0.184) TCGA-CK-6748-01 1 1635729 1635742 TCGTGCAGGTGTTT - CDK11A Frame_Shift_Del p.K536Qfs*7 0.55 TCGA-CK-6748-01 1 173174455 173174455 G A TNFSF4 Intron 0.38 TCGA-CK-6748-01 1 223813535 223813535 T C CAPN8 Missense_Mutation p.H262R 0.09 benign(0.415) TCGA-CK-6748-01 1 228475878 228475878 G A OBSCN Missense_Mutation p.E3739K 0.31 benign(0.134) TCGA-CK-6748-01 1 47400130 47400130 C G CYP4A11 Missense_Mutation p.A298P 0.29 deleterious(0) probably_damaging(0.976) TCGA-CK-6748-01 1 94496611 94496611 G A ABCA4 Silent p.G1398G 0.30 TCGA-CK-6748-01 20 31606574 31606574 G A BPIFB2 Silent p.A267A 0.22 TCGA-CK-6748-01 20 43945486 43945486 G A RBPJL Missense_Mutation p.V481M 0.14 tolerated(0.22) benign(0.021) TCGA-CK-6748-01 20 6057842 6057842 T C FERMT1 Missense_Mutation p.K671R 0.26 deleterious(0) probably_damaging(0.985) TCGA-CK-6748-01 20 62839305 62839305 A G MYT1 Silent p.K252K 0.11 TCGA-CK-6748-01 21 10906860 10906860 G T TPTE 3'UTR 0.07 TCGA-CK-6748-01 21 19704467 19704467 G T TMPRSS15 Missense_Mutation p.L530M 0.31 deleterious(0) probably_damaging(0.999) TCGA-CK-6748-01 21 28338243 28338243 G A ADAMTS5 Silent p.F156F 0.57 TCGA-CK-6748-01 21 40981566 40981566 T C C21orf88 Silent p.A32A 0.18 TCGA-CK-6748-01 2 174829208 174829208 G A SP3 Silent p.G27G 0.19 TCGA-CK-6748-01 2 179435879 179435879 G T TTN Missense_Mutation p.P24994T 0.32 TCGA-CK-6748-01 2 179581850 179581850 G C TTN Missense_Mutation p.D8537E 0.54 TCGA-CK-6748-01 2 209104604 209104604 G A IDH1 Missense_Mutation p.T325M 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-CK-6748-01 2 39605229 39605229 A G MAP4K3 Silent p.I44I 0.26 TCGA-CK-6748-01 2 80772158 80772158 G T CTNNA2 Missense_Mutation p.V448F 0.65 deleterious(0) probably_damaging(0.996) TCGA-CK-6748-01 3 172028619 172028619 C T FNDC3B Missense_Mutation p.A401V 0.22 deleterious(0.01) benign(0.253) TCGA-CK-6748-01 3 186282013 186282013 T C TBCCD1 Missense_Mutation p.I36V 0.12 tolerated(0.31) benign(0.008) TCGA-CK-6748-01 3 186338467 186338467 C T AHSG Silent p.G284G 0.19 TCGA-CK-6748-01 3 89448563 89448563 C A EPHA3 Silent p.I509I 0.34 TCGA-CK-6748-01 4 187540228 187540228 G A FAT1 Silent p.N2504N 0.57 TCGA-CK-6748-01 4 71472050 71472050 C T AMBN Missense_Mutation p.P316L 0.51 deleterious(0) probably_damaging(0.978) TCGA-CK-6748-01 4 73957503 73957503 G A ANKRD17 Missense_Mutation p.R1948C 0.23 possibly_damaging(0.627) TCGA-CK-6748-01 4 85722801 85722801 A G WDFY3 Splice_Site p.X941_splice 0.13 TCGA-CK-6748-01 5 1064197 1064197 C T SLC12A7 Splice_Site p.X869_splice 0.65 TCGA-CK-6748-01 5 112175235 112175235 C A APC Nonsense_Mutation p.S1315* 0.87 TCGA-CK-6748-01 5 121187841 121187841 C T FTMT Silent p.P61P 0.21 TCGA-CK-6748-01 5 41000846 41000846 T G MROH2B Missense_Mutation p.E1428D 0.30 deleterious(0.01) possibly_damaging(0.787) TCGA-CK-6748-01 5 83433151 83433151 T C EDIL3 Missense_Mutation p.E126G 0.09 tolerated(0.1) benign(0.053) TCGA-CK-6748-01 6 32729606 32729606 G A HLA-DQB2 Silent p.Y65Y 0.35 TCGA-CK-6748-01 6 56918903 56918903 T - KIAA1586 Frame_Shift_Del p.S537Qfs*20 0.23 TCGA-CK-6748-01 6 80626118 80626118 A T ELOVL4 3'UTR 0.29 TCGA-CK-6748-01 6 90410537 90410537 G T MDN1 Silent p.V2822V 0.35 TCGA-CK-6748-01 6 97533142 97533142 G A KLHL32 Silent p.T184T 0.47 TCGA-CK-6748-01 7 129091546 129091546 C T STRIP2 Missense_Mutation p.R123W 0.25 deleterious(0.04) possibly_damaging(0.773) TCGA-CK-6748-01 7 149486359 149486359 G A SSPO RNA 0.23 TCGA-CK-6748-01 7 150935501 150935501 C T CHPF2 Missense_Mutation p.R685W 0.33 deleterious(0) probably_damaging(0.981) TCGA-CK-6748-01 7 1595061 1595061 C A TMEM184A Missense_Mutation p.W20C 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.819) TCGA-CK-6748-01 7 2770905 2770905 G A GNA12 Silent p.T352T 0.23 TCGA-CK-6748-01 7 44578893 44578893 G A NPC1L1 Missense_Mutation p.A368V 0.24 tolerated(0.61) benign(0.005) TCGA-CK-6748-01 7 50660584 50660584 G A GRB10 3'UTR 0.21 TCGA-CK-6748-01 7 72093890 72093890 A G TYW1B Silent p.P159P 0.08 TCGA-CK-6748-01 7 74197403 74197403 C A NCF1 Missense_Mutation p.S191R 0.26 deleterious(0) probably_damaging(0.971) TCGA-CK-6748-01 8 132051945 132051945 T G ADCY8 Missense_Mutation p.K212T 0.21 tolerated(0.19) possibly_damaging(0.624) TCGA-CK-6748-01 8 142190864 142190864 A T DENND3 Missense_Mutation p.E872V 0.40 deleterious(0.01) benign(0.006) TCGA-CK-6748-01 8 3046432 3046432 C T CSMD1 Missense_Mutation p.V1834I 0.38 probably_damaging(0.989) TCGA-CK-6748-01 8 8176047 8176047 G A SGK223 Nonsense_Mutation p.Q1280* 0.45 TCGA-CK-6748-01 9 123628003 123628003 G T PHF19 Silent p.L295L 0.11 TCGA-CK-6748-01 9 123751392 123751392 C T C5 Silent p.L1054L 0.24 TCGA-CK-6748-01 9 16436241 16436241 C T BNC2 Missense_Mutation p.D651N 0.26 tolerated(0.48) possibly_damaging(0.549) TCGA-CK-6748-01 9 27561461 27561461 C T C9orf72 Intron 0.29 TCGA-CK-6748-01 X 142596644 142596644 C A SPANXN3 Nonstop_Mutation p.*142Yext*14 0.43 TCGA-CK-6748-01 X 54780192 54780192 C T ITIH6 Missense_Mutation p.G1082R 0.25 deleterious(0) probably_damaging(0.999) TCGA-CK-6751-01 10 114059321 114059321 G A TECTB Silent p.R302R 0.22 TCGA-CK-6751-01 10 127344338 127344338 T C TEX36 3'UTR 0.42 TCGA-CK-6751-01 10 135113048 135113048 C T TUBGCP2 Silent p.V113V 0.36 TCGA-CK-6751-01 10 26506540 26506540 G A GAD2 Silent p.A26A 0.37 TCGA-CK-6751-01 10 37431120 37431120 C - ANKRD30A Frame_Shift_Del p.A376Efs*3 0.21 TCGA-CK-6751-01 10 52389888 52389888 G A RP11-50E11.3 RNA 0.30 TCGA-CK-6751-01 10 79750825 79750825 T C POLR3A Missense_Mutation p.D963G 0.29 deleterious(0.04) benign(0.005) TCGA-CK-6751-01 11 110477462 110477462 G A ARHGAP20 Missense_Mutation p.P263S 0.27 deleterious(0) probably_damaging(1) TCGA-CK-6751-01 11 119216837 119216837 G A MFRP Missense_Mutation p.R64C 0.35 deleterious(0.02) possibly_damaging(0.614) TCGA-CK-6751-01 11 128844361 128844361 G A ARHGAP32 Missense_Mutation p.R897W 0.39 deleterious(0) probably_damaging(0.994) TCGA-CK-6751-01 11 20104140 20104140 C T NAV2 Silent p.V1832V 0.31 TCGA-CK-6751-01 11 55653082 55653082 C T TRIM51 Missense_Mutation p.R60W 0.40 tolerated(0.29) benign(0.003) TCGA-CK-6751-01 11 55890191 55890191 C A OR8H3 Missense_Mutation p.L115I 0.31 deleterious(0) probably_damaging(0.983) TCGA-CK-6751-01 11 57367465 57367465 C T SERPING1 Silent p.F55F 0.42 TCGA-CK-6751-01 11 6048827 6048827 C A OR56A1 Silent p.L36L 0.40 TCGA-CK-6751-01 11 62295714 62295714 G A AHNAK Missense_Mutation p.P2059S 0.45 possibly_damaging(0.612) TCGA-CK-6751-01 11 64938918 64938918 G A SPDYC Silent p.G49G 0.12 TCGA-CK-6751-01 11 7981780 7981780 T C NLRP10 Missense_Mutation p.K460R 0.08 tolerated(0.12) possibly_damaging(0.572) TCGA-CK-6751-01 11 93462817 93462818 AC G KIAA1731 Frame_Shift_Del p.Q2480Kfs*5 0.27 TCGA-CK-6751-01 11 93912893 93912909 TACTGTTAGCGTGTATC - PANX1 Frame_Shift_Del p.L225Pfs*50 0.31 TCGA-CK-6751-01 12 118198874 118198874 G A KSR2 Missense_Mutation p.R310W 0.30 deleterious(0) probably_damaging(0.974) TCGA-CK-6751-01 12 129558243 129558243 C T TMEM132D 3'UTR 0.33 TCGA-CK-6751-01 12 130926988 130926988 G A RIMBP2 Silent p.D286D 0.16 TCGA-CK-6751-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.33 deleterious(0) benign(0.361) TCGA-CK-6751-01 12 26348803 26348803 C T SSPN Silent p.A66A 0.36 TCGA-CK-6751-01 12 2929903 2929903 C T ITFG2 Missense_Mutation p.S187L 0.36 deleterious(0) possibly_damaging(0.839) TCGA-CK-6751-01 12 52379059 52379059 G A ACVR1B Missense_Mutation p.G396S 0.31 deleterious(0) probably_damaging(1) TCGA-CK-6751-01 12 53670437 53670437 G A ESPL1 Silent p.P578P 0.41 TCGA-CK-6751-01 12 68720618 68720618 C T MDM1 Missense_Mutation p.R106K 0.12 tolerated(1) benign(0.005) TCGA-CK-6751-01 12 79990382 79990382 C T PAWR Missense_Mutation p.S247N 0.29 tolerated(0.05) benign(0.028) TCGA-CK-6751-01 12 81111227 81111227 C T MYF5 Missense_Mutation p.R129C 0.38 deleterious(0.02) probably_damaging(0.939) TCGA-CK-6751-01 12 9089552 9089552 C T PHC1 Silent p.C823C 0.33 TCGA-CK-6751-01 13 103419700 103419700 G A TEX30 Missense_Mutation p.L143F 0.30 tolerated(0.09) probably_damaging(0.96) TCGA-CK-6751-01 13 20717168 20717168 G A GJA3 Missense_Mutation p.T87M 0.16 deleterious(0) probably_damaging(0.999) TCGA-CK-6751-01 13 27216439 27216439 G A WASF3 Missense_Mutation p.R11Q 0.46 deleterious(0.01) benign(0.218) TCGA-CK-6751-01 13 36764148 36764148 C T SOHLH2 Silent p.S269S 0.34 TCGA-CK-6751-01 13 37581194 37581194 C T EXOSC8 Missense_Mutation p.A158V 0.33 deleterious(0) probably_damaging(0.946) TCGA-CK-6751-01 13 39263269 39263269 G T FREM2 Silent p.L596L 0.47 TCGA-CK-6751-01 13 70681348 70681348 C T KLHL1 Missense_Mutation p.G162R 0.29 tolerated_low_confidence(0.46) benign(0.005) TCGA-CK-6751-01 14 106236102 106236102 C T IGHG3 Missense_Mutation p.V235I 0.41 tolerated(0.23) benign(0.169) TCGA-CK-6751-01 14 23847619 23847619 C T CMTM5 Missense_Mutation p.A63V 0.29 deleterious(0.02) possibly_damaging(0.713) TCGA-CK-6751-01 14 57957723 57957723 G T C14orf105 Missense_Mutation p.P97Q 0.32 deleterious(0) probably_damaging(1) TCGA-CK-6751-01 14 58831251 58831251 A G ARID4A Missense_Mutation p.N815S 0.08 tolerated_low_confidence(0.21) benign(0) TCGA-CK-6751-01 14 65392787 65392787 G A CHURC1-FNTB Missense_Mutation p.D80N 0.41 deleterious(0.02) benign(0.17) TCGA-CK-6751-01 14 75052596 75052596 G A LTBP2 Missense_Mutation p.A264V 0.17 tolerated(0.63) benign(0.004) TCGA-CK-6751-01 14 94401096 94401096 C A ASB2 Missense_Mutation p.R605L 0.32 tolerated(0.11) possibly_damaging(0.837) TCGA-CK-6751-01 14 95080998 95080998 A G SERPINA3 Missense_Mutation p.I74V 0.27 tolerated(0.7) benign(0.07) TCGA-CK-6751-01 15 43038211 43038211 G A TTBK2 Missense_Mutation p.R1173W 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CK-6751-01 15 45003745 45003745 A T B2M Translation_Start_Site p.M1? 0.15 deleterious(0) possibly_damaging(0.456) TCGA-CK-6751-01 15 66044894 66044894 G A DENND4A Silent p.P128P 0.35 TCGA-CK-6751-01 15 79749522 79749522 G A KIAA1024 Missense_Mutation p.V345M 0.41 tolerated(0.12) benign(0.052) TCGA-CK-6751-01 15 83346428 83346428 C T AP3B2 Missense_Mutation p.R458H 0.23 deleterious(0.05) benign(0.37) TCGA-CK-6751-01 16 1841749 1841749 C T IGFALS Missense_Mutation p.D262N 0.24 deleterious(0.03) possibly_damaging(0.824) TCGA-CK-6751-01 16 1878552 1878552 G T FAHD1 Intron 0.34 TCGA-CK-6751-01 16 86582143 86582143 G A MTHFSD Missense_Mutation p.T93M 0.28 deleterious(0.01) possibly_damaging(0.781) TCGA-CK-6751-01 16 88599085 88599085 G A ZFPM1 Missense_Mutation p.R337Q 0.44 deleterious(0) possibly_damaging(0.682) TCGA-CK-6751-01 17 10428768 10428768 G A MYH2 Nonsense_Mutation p.Q1513* 0.26 TCGA-CK-6751-01 17 10542472 10542472 C T MYH3 Missense_Mutation p.R1046Q 0.38 deleterious(0) benign(0.363) TCGA-CK-6751-01 17 12666523 12666523 G T MYOCD Missense_Mutation p.Q841H 0.38 tolerated(0.1) benign(0.03) TCGA-CK-6751-01 17 31322699 31322699 G A SPACA3 Missense_Mutation p.G103R 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-CK-6751-01 17 33591267 33591267 G T SLFN5 Nonsense_Mutation p.G402* 0.20 TCGA-CK-6751-01 17 39553648 39553648 G A KRT31 Silent p.C48C 0.33 TCGA-CK-6751-01 17 58121480 58121480 G A HEATR6 Missense_Mutation p.T997I 0.26 deleterious(0.01) benign(0.064) TCGA-CK-6751-01 17 70120178 70120178 C T SOX9 Nonsense_Mutation p.R394* 0.65 TCGA-CK-6751-01 17 72578363 72578364 - G CD300LD Frame_Shift_Ins p.L156Pfs*48 0.34 TCGA-CK-6751-01 17 76887647 76887647 T C DDC8 Silent p.P313P 0.17 TCGA-CK-6751-01 17 79668137 79668137 G A HGS Silent p.A733A 0.17 TCGA-CK-6751-01 17 8216372 8216372 G A ARHGEF15 Missense_Mutation p.R245Q 0.30 tolerated_low_confidence(0.08) benign(0.131) TCGA-CK-6751-01 19 10980043 10980043 A G C19orf38 Nonstop_Mutation p.*231Wext*2 0.12 TCGA-CK-6751-01 19 13423520 13423520 G A CACNA1A Missense_Mutation p.P544L 0.45 probably_damaging(0.958) TCGA-CK-6751-01 19 13616753 13616753 C T CACNA1A Missense_Mutation p.E96K 0.31 benign(0.013) TCGA-CK-6751-01 19 17213032 17213032 C T MYO9B Missense_Mutation p.R169C 0.10 deleterious(0) probably_damaging(1) TCGA-CK-6751-01 19 18099245 18099245 G A KCNN1 Missense_Mutation p.V361M 0.33 deleterious(0) possibly_damaging(0.788) TCGA-CK-6751-01 19 19655554 19655554 C T CILP2 Missense_Mutation p.R734C 0.39 deleterious(0.03) possibly_damaging(0.634) TCGA-CK-6751-01 19 21934527 21934527 A G ZNF100 Intron 0.40 TCGA-CK-6751-01 19 22271249 22271249 G A ZNF257 Missense_Mutation p.E233K 0.33 tolerated(0.08) possibly_damaging(0.558) TCGA-CK-6751-01 19 35651641 35651641 C A FXYD5 Missense_Mutation p.Q77K 0.36 tolerated(0.27) benign(0.001) TCGA-CK-6751-01 19 46443733 46443733 G A NOVA2 Silent p.Y289Y 0.44 TCGA-CK-6751-01 19 48197553 48197553 G A GLTSCR1 Missense_Mutation p.C822Y 0.37 unknown(0) TCGA-CK-6751-01 19 50333135 50333135 G A MED25 Silent p.P206P 0.15 TCGA-CK-6751-01 19 50920353 50920353 A G POLD1 Missense_Mutation p.E1040G 0.14 deleterious(0.04) benign(0.015) TCGA-CK-6751-01 19 51647792 51647792 C A SIGLEC7 Missense_Mutation p.S188Y 0.34 deleterious(0) probably_damaging(0.945) TCGA-CK-6751-01 19 51848618 51848618 C A ETFB Missense_Mutation p.K296N 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CK-6751-01 19 55451127 55451127 C T NLRP7 Missense_Mutation p.A354T 0.36 tolerated(0.17) benign(0.312) TCGA-CK-6751-01 19 55494373 55494373 G A NLRP2 Missense_Mutation p.R436Q 0.21 tolerated(1) benign(0.003) TCGA-CK-6751-01 19 55689583 55689583 C T SYT5 Missense_Mutation p.G78D 0.36 tolerated(0.07) benign(0.013) TCGA-CK-6751-01 1 113269357 113269357 T C FAM19A3 3'UTR 0.09 TCGA-CK-6751-01 1 120502118 120502118 A G NOTCH2 Silent p.N641N 0.24 TCGA-CK-6751-01 1 1421183 1421183 C T ATAD3B Nonsense_Mutation p.R310* 0.37 TCGA-CK-6751-01 1 145290840 145290840 G A NOTCH2NL 3'Flank 0.19 TCGA-CK-6751-01 1 150531009 150531009 G A ADAMTSL4 Missense_Mutation p.G815S 0.31 deleterious(0) probably_damaging(1) TCGA-CK-6751-01 1 151237890 151237890 G T PSMD4 Silent p.L153L 0.29 TCGA-CK-6751-01 1 152488217 152488217 G A CRCT1 3'UTR 0.30 TCGA-CK-6751-01 1 155023193 155023193 C T DCST1 Missense_Mutation p.S657F 0.53 deleterious(0.02) benign(0.196) TCGA-CK-6751-01 1 155658725 155658725 C T YY1AP1 5'Flank 0.28 TCGA-CK-6751-01 1 158648201 158648201 G A SPTA1 Nonsense_Mutation p.R268* 0.20 TCGA-CK-6751-01 1 159283837 159283837 C T OR10J3 Missense_Mutation p.V205I 0.36 tolerated(0.4) benign(0.032) TCGA-CK-6751-01 1 160209745 160209745 G A DCAF8 Silent p.L155L 0.39 TCGA-CK-6751-01 1 165728820 165728820 C T TMCO1 Silent p.L101L 0.38 TCGA-CK-6751-01 1 166991244 166991244 G A MAEL 3'UTR 0.64 TCGA-CK-6751-01 1 17660498 17660498 G A PADI4 Missense_Mutation p.G112R 0.36 deleterious(0.02) possibly_damaging(0.822) TCGA-CK-6751-01 1 179834058 179834058 G T IFRG15 Missense_Mutation p.A85D 0.28 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-CK-6751-01 1 181058924 181058924 G T IER5 Nonsense_Mutation p.E296* 0.38 TCGA-CK-6751-01 1 181452968 181452968 G A CACNA1E Missense_Mutation p.V30M 0.42 tolerated_low_confidence(0.13) possibly_damaging(0.623) TCGA-CK-6751-01 1 214813668 214813668 G A CENPF Missense_Mutation p.E663K 0.42 probably_damaging(0.994) TCGA-CK-6751-01 1 215848694 215848694 G A USH2A Missense_Mutation p.R4187C 0.34 probably_damaging(0.969) TCGA-CK-6751-01 1 2418634 2418634 C T PLCH2 Silent p.S284S 0.54 TCGA-CK-6751-01 1 24485550 24485550 G A IFNLR1 Missense_Mutation p.R265W 0.33 tolerated(0.15) benign(0.003) TCGA-CK-6751-01 1 247611779 247611779 G A NLRP3 Silent p.L1028L 0.41 TCGA-CK-6751-01 1 29095648 29095648 A G YTHDF2 3'UTR 0.42 TCGA-CK-6751-01 1 48825369 48825369 G A SPATA6 Missense_Mutation p.S328L 0.22 tolerated(0.73) benign(0.035) TCGA-CK-6751-01 1 53755306 53755306 G A LRP8 Silent p.H100H 0.27 TCGA-CK-6751-01 1 6206455 6206455 C T CHD5 Missense_Mutation p.R540H 0.18 deleterious(0) possibly_damaging(0.832) TCGA-CK-6751-01 1 67303318 67303318 T C WDR78 Intron 0.40 TCGA-CK-6751-01 20 47991224 47991224 A G KCNB1 Silent p.N291N 0.26 TCGA-CK-6751-01 20 60419757 60419757 C T CDH4 Missense_Mutation p.R204W 0.32 tolerated(0.12) probably_damaging(0.948) TCGA-CK-6751-01 20 60793617 60793617 A C HRH3 Missense_Mutation p.L116R 0.29 deleterious(0) probably_damaging(0.952) TCGA-CK-6751-01 20 61957030 61957030 G A COL20A1 Missense_Mutation p.G1120D 0.33 deleterious(0) probably_damaging(0.997) TCGA-CK-6751-01 20 61981063 61981063 G A CHRNA4 Missense_Mutation p.A567V 0.34 tolerated(0.19) benign(0.244) TCGA-CK-6751-01 20 744190 744190 A G SLC52A3 Missense_Mutation p.I342T 0.12 deleterious(0.04) benign(0.003) TCGA-CK-6751-01 20 8628580 8628580 A G PLCB1 Silent p.E166E 0.29 TCGA-CK-6751-01 21 15954754 15954754 C A SAMSN1 5'UTR 0.38 TCGA-CK-6751-01 21 45548166 45548166 G A PWP2 Missense_Mutation p.E800K 0.29 tolerated(0.13) benign(0.278) TCGA-CK-6751-01 21 46321610 46321610 C T ITGB2 Missense_Mutation p.V180M 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-6751-01 22 19119145 19119145 T C TSSK2 Missense_Mutation p.I78T 0.10 deleterious(0) probably_damaging(0.978) TCGA-CK-6751-01 22 22892481 22892481 C T PRAME Missense_Mutation p.R207H 0.25 tolerated(1) benign(0) TCGA-CK-6751-01 22 32802727 32802727 C T RTCB Missense_Mutation p.V88I 0.31 tolerated(1) benign(0.012) TCGA-CK-6751-01 22 32843203 32843203 G A BPIFC Missense_Mutation p.L124F 0.30 deleterious(0.03) probably_damaging(1) TCGA-CK-6751-01 22 43651517 43651517 C T SCUBE1 Intron 0.40 TCGA-CK-6751-01 2 105890074 105890074 A C TGFBRAP1 Missense_Mutation p.I580S 0.27 deleterious(0) possibly_damaging(0.653) TCGA-CK-6751-01 2 109087642 109087642 G A GCC2 Silent p.R619R 0.38 TCGA-CK-6751-01 2 144276893 144276893 G A ARHGAP15 Silent p.P295P 0.28 TCGA-CK-6751-01 2 148680662 148680662 C T ACVR2A Missense_Mutation p.R400C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CK-6751-01 2 155157982 155157982 C T GALNT13 Missense_Mutation p.R346W 0.40 deleterious(0) probably_damaging(0.998) TCGA-CK-6751-01 2 177191626 177191626 C T MTX2 Silent p.A94A 0.29 TCGA-CK-6751-01 2 182344884 182344884 C T ITGA4 Silent p.A215A 0.29 TCGA-CK-6751-01 2 198415384 198415384 A G HSPE1-MOB4 3'UTR 0.24 TCGA-CK-6751-01 2 215845310 215845310 C T ABCA12 Missense_Mutation p.R1546H 0.30 deleterious(0) probably_damaging(0.999) TCGA-CK-6751-01 2 216965129 216965129 G A TMEM169 Missense_Mutation p.C253Y 0.26 tolerated(1) benign(0.052) TCGA-CK-6751-01 2 228211954 228211954 G A MFF Silent p.S202S 0.42 TCGA-CK-6751-01 2 234235810 234235810 G A SAG Missense_Mutation p.S160N 0.25 tolerated(1) benign(0) TCGA-CK-6751-01 2 234296988 234296988 C T DGKD Missense_Mutation p.T81M 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-CK-6751-01 2 234750826 234750826 C G HJURP Missense_Mutation p.K200N 0.28 tolerated(0.12) benign(0.026) TCGA-CK-6751-01 2 242690702 242690702 G A D2HGDH Missense_Mutation p.A347T 0.38 tolerated(0.28) benign(0.026) TCGA-CK-6751-01 2 26951348 26951348 C T KCNK3 Missense_Mutation p.A366V 0.48 tolerated_low_confidence(0.52) benign(0.017) TCGA-CK-6751-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.31 deleterious(0.01) probably_damaging(0.964) TCGA-CK-6751-01 3 108698499 108698499 C T MORC1 Silent p.P780P 0.31 TCGA-CK-6751-01 3 128853789 128853789 G A ISY1 Missense_Mutation p.P165S 0.30 deleterious(0.01) benign(0.137) TCGA-CK-6751-01 3 132390646 132390646 G A UBA5 Nonsense_Mutation p.W202* 0.35 TCGA-CK-6751-01 3 141164267 141164267 G A ZBTB38 Missense_Mutation p.E1013K 0.38 deleterious(0.04) probably_damaging(0.991) TCGA-CK-6751-01 3 15298407 15298407 C T SH3BP5 Missense_Mutation p.R368Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.629) TCGA-CK-6751-01 3 178957643 178957643 A G KCNMB3 3'Flank 0.38 TCGA-CK-6751-01 3 197404371 197404371 C T KIAA0226 Silent p.K824K 0.32 TCGA-CK-6751-01 3 38618162 38618162 G A SCN5A Silent p.C1167C 0.25 TCGA-CK-6751-01 3 50395776 50395776 G A TMEM115 Missense_Mutation p.A240V 0.35 deleterious(0.01) probably_damaging(0.918) TCGA-CK-6751-01 3 52555461 52555461 G A STAB1 Missense_Mutation p.R1998H 0.33 tolerated(1) benign(0) TCGA-CK-6751-01 3 77147311 77147311 C T ROBO2 Nonsense_Mutation p.R86* 0.34 TCGA-CK-6751-01 3 78647910 78647910 G T ROBO1 3'UTR 0.27 TCGA-CK-6751-01 4 155243500 155243500 C T DCHS2 Missense_Mutation p.A932T 0.33 tolerated(0.13) benign(0.422) TCGA-CK-6751-01 4 156136623 156136623 T G NPY2R 3'UTR 0.39 TCGA-CK-6751-01 4 15688770 15688773 AAGT - FAM200B Frame_Shift_Del p.S59Qfs*9 0.35 TCGA-CK-6751-01 4 164449880 164449880 G T MARCH1 3'UTR 0.41 TCGA-CK-6751-01 4 168155297 168155297 C T SPOCK3 Missense_Mutation p.V10M 0.37 tolerated_low_confidence(0.06) benign(0.046) TCGA-CK-6751-01 4 55156587 55156587 G A PDGFRA Silent p.E996E 0.28 TCGA-CK-6751-01 4 62800676 62800676 G A LPHN3 Missense_Mutation p.S676N 0.24 tolerated(0.17) benign(0.136) TCGA-CK-6751-01 4 71693664 71693664 G A GRSF1 Missense_Mutation p.A347V 0.33 tolerated(0.12) benign(0.146) TCGA-CK-6751-01 5 112176016 112176016 A - APC Frame_Shift_Del p.E1576Kfs*74 0.35 TCGA-CK-6751-01 5 134870972 134870972 C T NEUROG1 Missense_Mutation p.A137T 0.30 deleterious(0) probably_damaging(1) TCGA-CK-6751-01 5 137424648 137424648 G A WNT8A Missense_Mutation p.D134N 0.30 deleterious(0.01) possibly_damaging(0.78) TCGA-CK-6751-01 5 140557701 140557701 C T PCDHB8 Missense_Mutation p.A29V 0.13 tolerated_low_confidence(0.11) benign(0.087) TCGA-CK-6751-01 5 140754810 140754810 C T PCDHGA6 Missense_Mutation p.P387L 0.35 tolerated_low_confidence(0.22) benign(0.035) TCGA-CK-6751-01 5 14387901 14387901 C T TRIO Nonsense_Mutation p.R1276* 0.43 TCGA-CK-6751-01 5 149927883 149927883 G A NDST1 Missense_Mutation p.R750H 0.44 tolerated(0.05) benign(0.226) TCGA-CK-6751-01 5 154173492 154173492 G A LARP1 Missense_Mutation p.R257Q 0.38 tolerated(0.08) probably_damaging(0.998) TCGA-CK-6751-01 5 17275886 17275886 C T BASP1 Silent p.P187P 0.32 TCGA-CK-6751-01 5 39381576 39381576 A C DAB2 Missense_Mutation p.V495G 0.21 tolerated(0.27) benign(0.002) TCGA-CK-6751-01 5 50689501 50689501 C T ISL1 3'UTR 0.37 TCGA-CK-6751-01 5 56777951 56777951 G A ACTBL2 Missense_Mutation p.T195I 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.767) TCGA-CK-6751-01 5 63509804 63509804 C A RNF180 Silent p.G217G 0.30 TCGA-CK-6751-01 5 71495794 71495794 C T MAP1B Silent p.P2204P 0.28 TCGA-CK-6751-01 5 80659704 80659704 C G ACOT12 Missense_Mutation p.S88T 0.35 deleterious(0.01) possibly_damaging(0.761) TCGA-CK-6751-01 5 89925259 89925259 A T GPR98 Missense_Mutation p.N581I 0.39 benign(0.155) TCGA-CK-6751-01 6 132722388 132722388 C T MOXD1 Missense_Mutation p.V60M 0.19 tolerated(0.06) probably_damaging(0.965) TCGA-CK-6751-01 6 146350759 146350759 C T GRM1 Missense_Mutation p.R36C 0.26 deleterious(0) probably_damaging(0.993) TCGA-CK-6751-01 6 31324464 31324464 C T HLA-B Splice_Site p.X115_splice 0.31 TCGA-CK-6751-01 6 32035600 32035600 G T TNXB Missense_Mutation p.Q2128K 0.17 probably_damaging(0.915) TCGA-CK-6751-01 6 32820893 32820893 C T TAP1 Missense_Mutation p.R234H 0.17 tolerated(0.24) benign(0.009) TCGA-CK-6751-01 6 43412081 43412081 T C ABCC10 Silent p.L893L 0.08 TCGA-CK-6751-01 6 99916432 99916432 T C USP45 Silent p.E332E 0.28 TCGA-CK-6751-01 7 100175009 100175009 C T LRCH4 Silent p.R394R 0.26 TCGA-CK-6751-01 7 110764098 110764098 G C LRRN3 Missense_Mutation p.A424P 0.27 deleterious(0) probably_damaging(0.927) TCGA-CK-6751-01 7 110764247 110764247 C T LRRN3 Silent p.F473F 0.22 TCGA-CK-6751-01 7 121513538 121513538 C T PTPRZ1 5'UTR 0.30 TCGA-CK-6751-01 7 2632682 2632682 C T IQCE Missense_Mutation p.A424V 0.34 tolerated(0.12) benign(0.033) TCGA-CK-6751-01 7 30054437 30054437 C A FKBP14 Missense_Mutation p.V184L 0.40 tolerated(0.53) benign(0.351) TCGA-CK-6751-01 7 47408820 47408820 T C TNS3 Missense_Mutation p.T475A 0.09 deleterious(0) probably_damaging(0.99) TCGA-CK-6751-01 7 5643574 5643574 C T FSCN1 Missense_Mutation p.R398C 0.28 deleterious(0) probably_damaging(0.959) TCGA-CK-6751-01 7 70885988 70885988 C T WBSCR17 Missense_Mutation p.R287W 0.41 deleterious(0) probably_damaging(0.998) TCGA-CK-6751-01 8 117875374 117875374 C A RAD21 Missense_Mutation p.R90L 0.36 deleterious(0.04) possibly_damaging(0.716) TCGA-CK-6751-01 8 140999001 140999001 C T TRAPPC9 Missense_Mutation p.E1013K 0.32 tolerated(0.35) probably_damaging(0.946) TCGA-CK-6751-01 8 1616583 1616583 C A DLGAP2 Missense_Mutation p.S553R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CK-6751-01 8 17872266 17872266 G T PCM1 Nonsense_Mutation p.E1920* 0.35 TCGA-CK-6751-01 8 32617876 32617876 A G NRG1 Missense_Mutation p.H412R 0.08 tolerated(0.13) possibly_damaging(0.888) TCGA-CK-6751-01 8 57354439 57354439 T C PENK Missense_Mutation p.K66E 0.11 tolerated(0.1) possibly_damaging(0.517) TCGA-CK-6751-01 8 66963845 66963845 C T DNAJC5B Silent p.Y21Y 0.25 TCGA-CK-6751-01 9 100995794 100995794 G A TBC1D2 Nonsense_Mutation p.Q229* 0.26 TCGA-CK-6751-01 9 101891137 101891137 C T TGFBR1 Missense_Mutation p.A33V 0.16 tolerated(0.1) unknown(0) TCGA-CK-6751-01 9 101904819 101904819 C A TGFBR1 Missense_Mutation p.D269E 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-CK-6751-01 9 140948334 140948334 G A CACNA1B Missense_Mutation p.V1282I 0.28 deleterious(0.05) probably_damaging(0.99) TCGA-CK-6751-01 9 35091830 35091830 C T PIGO Missense_Mutation p.R685H 0.21 tolerated(0.11) possibly_damaging(0.548) TCGA-CK-6751-01 9 71851108 71851108 A G TJP2 Missense_Mutation p.R680G 0.10 deleterious(0) probably_damaging(1) TCGA-CK-6751-01 9 84547671 84547671 C A RP11-383M4.6 Intron 0.28 TCGA-CK-6751-01 9 88968002 88968002 T G ZCCHC6 Missense_Mutation p.D38A 0.36 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-CK-6751-01 X 100349634 100349634 C T TMEM35 Nonsense_Mutation p.R65* 0.31 TCGA-CK-6751-01 X 105876482 105876482 A C CXorf57 Missense_Mutation p.M435L 0.35 tolerated(0.1) benign(0.002) TCGA-CK-6751-01 X 106846509 106846509 C A FRMPD3 Missense_Mutation p.A1780D 0.25 deleterious_low_confidence(0) benign(0.053) TCGA-CK-6751-01 X 107911706 107911706 T G COL4A5 Silent p.P1254P 0.37 TCGA-CK-6751-01 X 108921572 108921572 C A ACSL4 Missense_Mutation p.R284L 0.30 tolerated(0.87) benign(0.018) TCGA-CK-6751-01 X 120181690 120181690 G A GLUD2 Missense_Mutation p.R51H 0.32 deleterious(0.03) possibly_damaging(0.66) TCGA-CK-6751-01 X 133378982 133378982 C A CCDC160 Missense_Mutation p.S51Y 0.29 deleterious(0) possibly_damaging(0.781) TCGA-CK-6751-01 X 134185377 134185377 C T FAM127B 3'UTR 0.41 TCGA-CK-6751-01 X 13588047 13588047 G A EGFL6 Missense_Mutation p.A23T 0.32 tolerated(0.22) benign(0.005) TCGA-CK-6751-01 X 140335839 140335839 C T SPANXC Silent p.P35P 0.13 TCGA-CK-6751-01 X 140993226 140993226 G A MAGEC1 Silent p.P12P 0.40 TCGA-CK-6751-01 X 142716452 142716452 G C SLITRK4 Missense_Mutation p.L825V 0.35 deleterious(0) probably_damaging(0.967) TCGA-CK-6751-01 X 142718735 142718735 G A SLITRK4 Missense_Mutation p.L64F 0.15 deleterious(0) probably_damaging(0.991) TCGA-CK-6751-01 X 154493546 154493546 G A RAB39B Missense_Mutation p.R10W 0.32 deleterious(0.01) benign(0.21) TCGA-CK-6751-01 X 15540604 15540604 T C BMX Missense_Mutation p.Y216H 0.27 tolerated(0.12) benign(0.035) TCGA-CK-6751-01 X 21675213 21675213 C T KLHL34 Missense_Mutation p.V232I 0.48 tolerated(0.7) benign(0.005) TCGA-CK-6751-01 X 51487338 51487338 G A GSPT2 Missense_Mutation p.V206I 0.27 tolerated(0.51) benign(0.036) TCGA-CK-6751-01 X 54263400 54263400 C T WNK3 Silent p.L1533L 0.38 TCGA-CK-6751-01 X 5811269 5811269 G A NLGN4X Silent p.A680A 0.13 TCGA-CK-6751-01 X 70517238 70517238 C T NONO Missense_Mutation p.R319C 0.29 tolerated(0.11) benign(0.014) TCGA-CK-6751-01 X 82763392 82763392 G A POU3F4 Silent p.A20A 0.27 TCGA-CK-6751-01 X 83730310 83730310 C G HDX Missense_Mutation p.Q32H 0.17 deleterious(0) probably_damaging(0.996) TCGA-CM-4743-01 10 101969386 101969386 C T CHUK Missense_Mutation p.R365Q 0.19 tolerated(0.37) probably_damaging(0.997) TCGA-CM-4743-01 10 102676710 102676710 C T FAM178A Nonsense_Mutation p.R190* 0.19 TCGA-CM-4743-01 10 102740717 102740717 G T SEMA4G Missense_Mutation p.A536S 0.20 tolerated(0.72) benign(0.03) TCGA-CM-4743-01 10 102743066 102743066 A G SEMA4G Silent p.P570P 0.18 TCGA-CM-4743-01 10 103986309 103986309 G A ELOVL3 Missense_Mutation p.V2I 0.18 tolerated_low_confidence(0.43) benign(0.005) TCGA-CM-4743-01 10 104486427 104486428 - C SFXN2 Frame_Shift_Ins p.R14Pfs*27 0.19 TCGA-CM-4743-01 10 117849267 117849267 C T GFRA1 Silent p.P394P 0.14 TCGA-CM-4743-01 10 118435944 118435944 A - HSPA12A Frame_Shift_Del p.F452Lfs*88 0.18 TCGA-CM-4743-01 10 118630770 118630770 T A ENO4 Silent p.A119A 0.23 TCGA-CM-4743-01 10 118897445 118897445 G A VAX1 Silent p.A41A 0.20 TCGA-CM-4743-01 10 120825029 120825029 C T EIF3A Missense_Mutation p.R335H 0.16 tolerated(0.25) unknown(0) TCGA-CM-4743-01 10 124089046 124089046 G A BTBD16 Silent p.R321R 0.22 TCGA-CM-4743-01 10 124395559 124395559 C T DMBT1 Missense_Mutation p.R2072C 0.23 tolerated(0.07) benign(0.009) TCGA-CM-4743-01 10 124908138 124908138 C - HMX2 Frame_Shift_Del p.I84Sfs*87 0.18 TCGA-CM-4743-01 10 125521475 125521475 C A CPXM2 Missense_Mutation p.D564Y 0.22 deleterious(0.02) probably_damaging(0.954) TCGA-CM-4743-01 10 127350530 127350530 A G TEX36 Missense_Mutation p.L23P 0.21 tolerated(0.06) benign(0.103) TCGA-CM-4743-01 10 129207341 129207341 G A DOCK1 Missense_Mutation p.R1367Q 0.21 tolerated(0.1) probably_damaging(0.957) TCGA-CM-4743-01 10 13043343 13043343 C T CCDC3 Silent p.S76S 0.21 TCGA-CM-4743-01 10 132915126 132915126 G A TCERG1L Missense_Mutation p.P444L 0.17 tolerated(0.09) benign(0.012) TCGA-CM-4743-01 10 134738299 134738299 G A TTC40 Missense_Mutation p.T386M 0.33 deleterious(0) probably_damaging(0.931) TCGA-CM-4743-01 10 134902466 134902466 G - GPR123 Intron 0.17 TCGA-CM-4743-01 10 135044852 135044852 G A UTF1 Missense_Mutation p.R311H 0.25 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-CM-4743-01 10 16526700 16526701 AC - PTER Frame_Shift_Del p.Q108Dfs*44 0.17 TCGA-CM-4743-01 10 18280195 18280195 A - SLC39A12 Frame_Shift_Del p.K463Nfs*34 0.19 TCGA-CM-4743-01 10 24873560 24873560 G A ARHGAP21 Silent p.T1886T 0.21 TCGA-CM-4743-01 10 25138688 25138688 G - PRTFDC1 3'UTR 0.18 TCGA-CM-4743-01 10 26482211 26482211 G A MYO3A Missense_Mutation p.E1506K 0.12 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-CM-4743-01 10 26505791 26505791 G T GAD2 Missense_Mutation p.G18V 0.31 deleterious_low_confidence(0.02) benign(0.049) TCGA-CM-4743-01 10 27322259 27322259 T - ANKRD26 Frame_Shift_Del p.K1234Nfs*19 0.21 TCGA-CM-4743-01 10 27552121 27552121 G A ARMC4P1 RNA 0.24 TCGA-CM-4743-01 10 29747366 29747366 G A SVIL Silent p.F2185F 0.24 TCGA-CM-4743-01 10 35929104 35929104 C T FZD8 Silent p.S418S 0.21 TCGA-CM-4743-01 10 38654474 38654474 G T HSD17B7P2 RNA 0.21 TCGA-CM-4743-01 10 43671419 43671420 - T CSGALNACT2 Frame_Shift_Ins p.W427Lfs*23 0.10 TCGA-CM-4743-01 10 44139781 44139781 C A ZNF32 Missense_Mutation p.R180M 0.30 deleterious(0) benign(0.424) TCGA-CM-4743-01 10 44873949 44873949 G C CXCL12 Intron 0.11 TCGA-CM-4743-01 10 45877969 45877969 C T ALOX5 Silent p.G63G 0.24 TCGA-CM-4743-01 10 46252580 46252580 A - FAM21C Frame_Shift_Del p.K516Rfs*41 0.26 TCGA-CM-4743-01 10 48390168 48390168 C - RBP3 Frame_Shift_Del p.G237Afs*33 0.17 TCGA-CM-4743-01 10 49612896 49612896 G A MAPK8 Missense_Mutation p.A42T 0.25 deleterious(0) possibly_damaging(0.668) TCGA-CM-4743-01 10 50122112 50122112 T - LRRC18 Frame_Shift_Del p.K30Sfs*5 0.15 TCGA-CM-4743-01 10 50315914 50315914 C T VSTM4 Missense_Mutation p.R61H 0.20 deleterious(0.03) probably_damaging(1) TCGA-CM-4743-01 10 50820735 50820735 G A SLC18A3 3'UTR 0.22 TCGA-CM-4743-01 10 50827792 50827792 C - CHAT Frame_Shift_Del p.P138Rfs*62 0.24 TCGA-CM-4743-01 10 55581807 55581807 T G PCDH15 Missense_Mutation p.E1895D 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CM-4743-01 10 55587209 55587209 C T PCDH15 Silent p.P1437P 0.38 TCGA-CM-4743-01 10 55755451 55755451 A G PCDH15 Silent p.G942G 0.23 TCGA-CM-4743-01 10 5931035 5931035 C T ANKRD16 Missense_Mutation p.A95T 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-CM-4743-01 10 59975913 59975913 C T IPMK Missense_Mutation p.G180D 0.23 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 10 6061830 6061830 C T IL2RA Intron 0.21 TCGA-CM-4743-01 10 61612347 61612349 TTC - CCDC6 In_Frame_Del p.E139del 0.15 TCGA-CM-4743-01 10 63957709 63957709 T G RTKN2 Missense_Mutation p.K596N 0.22 deleterious(0.01) benign(0.398) TCGA-CM-4743-01 10 64148188 64148188 G A ZNF365 Silent p.A259A 0.24 TCGA-CM-4743-01 10 7213965 7213965 G A SFMBT2 Silent p.P769P 0.36 TCGA-CM-4743-01 10 73051482 73051482 G A UNC5B Missense_Mutation p.G530S 0.21 tolerated(0.39) benign(0.003) TCGA-CM-4743-01 10 73575118 73575118 G - CDH23 3'UTR 0.24 TCGA-CM-4743-01 10 73973043 73973043 C T ASCC1 Missense_Mutation p.R5H 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-CM-4743-01 10 74884077 74884077 C T NUDT13 Missense_Mutation p.T155M 0.21 tolerated(0.09) benign(0.149) TCGA-CM-4743-01 10 75558155 75558155 G A ZSWIM8 Missense_Mutation p.A1374T 0.20 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 10 77167277 77167277 C T RP11-399K21.14 5'Flank 0.20 TCGA-CM-4743-01 10 93593641 93593641 C T TNKS2 Missense_Mutation p.S436F 0.19 deleterious(0.01) possibly_damaging(0.87) TCGA-CM-4743-01 10 94449947 94449947 G A HHEX Silent p.P68P 0.26 TCGA-CM-4743-01 10 95372698 95372698 G - PDE6C Frame_Shift_Del p.G74Afs*69 0.25 TCGA-CM-4743-01 10 96025680 96025680 C A PLCE1 Missense_Mutation p.L1416I 0.19 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 10 97393321 97393321 A G ALDH18A1 Missense_Mutation p.I215T 0.21 deleterious(0.01) benign(0.287) TCGA-CM-4743-01 10 98105698 98105698 T G OPALIN Nonstop_Mutation p.*142Cext*47 0.23 TCGA-CM-4743-01 10 99225676 99225676 G T MMS19 Missense_Mutation p.Q548K 0.14 tolerated(1) benign(0) TCGA-CM-4743-01 11 101984916 101984916 G T YAP1 Missense_Mutation p.Q121H 0.23 tolerated(0.63) benign(0.001) TCGA-CM-4743-01 11 102737049 102737049 T A MMP12 RNA 0.25 TCGA-CM-4743-01 11 102826221 102826221 C T MMP13 Missense_Mutation p.R41H 0.14 tolerated(0.16) benign(0.001) TCGA-CM-4743-01 11 10523123 10523123 C T AMPD3 Silent p.L619L 0.19 TCGA-CM-4743-01 11 10794137 10794137 C T CTR9 Missense_Mutation p.R839W 0.24 deleterious(0) possibly_damaging(0.639) TCGA-CM-4743-01 11 108155200 108155200 G A ATM Silent p.Q1331Q 0.18 TCGA-CM-4743-01 11 108383886 108383886 A G EXPH5 Missense_Mutation p.I783T 0.19 tolerated(0.31) benign(0.005) TCGA-CM-4743-01 11 109294468 109294468 G A C11orf87 Missense_Mutation p.G37S 0.22 tolerated_low_confidence(0.22) benign(0.011) TCGA-CM-4743-01 11 109295633 109295633 A G C11orf87 3'UTR 0.17 TCGA-CM-4743-01 11 111572218 111572218 C T SIK2 Missense_Mutation p.P216S 0.19 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 11 113857684 113857684 G A HTR3A Missense_Mutation p.A390T 0.33 tolerated(1) benign(0.005) TCGA-CM-4743-01 11 114121253 114121253 G A ZBTB16 Silent p.T666T 0.24 TCGA-CM-4743-01 11 117062651 117062651 G A SIDT2 Missense_Mutation p.R598Q 0.19 deleterious(0) possibly_damaging(0.815) TCGA-CM-4743-01 11 117089871 117089871 G A PCSK7 Missense_Mutation p.R445C 0.21 deleterious(0.03) possibly_damaging(0.773) TCGA-CM-4743-01 11 117352730 117352730 C T DSCAML1 Missense_Mutation p.R896Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-CM-4743-01 11 117774223 117774223 G T TMPRSS13 Intron 0.21 TCGA-CM-4743-01 11 118769668 118769668 G A BCL9L Missense_Mutation p.T1319M 0.20 probably_damaging(0.991) TCGA-CM-4743-01 11 119548300 119548300 T C PVRL1 Missense_Mutation p.D233G 0.20 tolerated(0.07) possibly_damaging(0.695) TCGA-CM-4743-01 11 11970052 11970052 A - USP47 Frame_Shift_Del p.G1033Efs*22 0.19 TCGA-CM-4743-01 11 120111018 120111018 G - POU2F3 Intron 0.21 TCGA-CM-4743-01 11 120833343 120833343 T G GRIK4 Missense_Mutation p.I740S 0.18 deleterious(0.01) possibly_damaging(0.791) TCGA-CM-4743-01 11 123908933 123908933 A G OR10G7 Missense_Mutation p.L259P 0.23 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 11 124626196 124626196 G T ESAM Missense_Mutation p.L172M 0.32 tolerated(0.13) possibly_damaging(0.787) TCGA-CM-4743-01 11 124790362 124790362 T C HEPACAM 3'UTR 0.18 TCGA-CM-4743-01 11 1252193 1252193 G A MUC5B Missense_Mutation p.V500M 0.23 unknown(0) TCGA-CM-4743-01 11 126215295 126215295 G A DCPS Silent p.L267L 0.27 TCGA-CM-4743-01 11 1269891 1269891 C A MUC5B Silent p.A3927A 0.20 TCGA-CM-4743-01 11 1270809 1270809 C A MUC5B Silent p.A4233A 0.19 TCGA-CM-4743-01 11 128680581 128680581 G A FLI1 Missense_Mutation p.G353S 0.18 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 11 130011436 130011436 C T APLP2 Missense_Mutation p.A668V 0.07 tolerated(0.05) benign(0.22) TCGA-CM-4743-01 11 130059742 130059742 G A ST14 Silent p.P183P 0.28 TCGA-CM-4743-01 11 130343421 130343421 C T ADAMTS15 Missense_Mutation p.A853V 0.37 tolerated(0.39) benign(0.001) TCGA-CM-4743-01 11 132307147 132307147 G A OPCML Silent p.P211P 0.20 TCGA-CM-4743-01 11 133789974 133789974 G T IGSF9B Missense_Mutation p.P1216T 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-4743-01 11 134026963 134026963 G A NCAPD3 Missense_Mutation p.S1401L 0.17 deleterious(0.03) benign(0.033) TCGA-CM-4743-01 11 14101464 14101464 T C SPON1 RNA 0.22 TCGA-CM-4743-01 11 14280831 14280831 T A RP11-21L19.1 3'Flank 0.21 TCGA-CM-4743-01 11 18194725 18194726 - G MRGPRX4 5'UTR 0.16 TCGA-CM-4743-01 11 20117290 20117290 G - NAV2 Frame_Shift_Del p.V2057Wfs*16 0.20 TCGA-CM-4743-01 11 20181562 20181562 G A DBX1 Silent p.S103S 0.17 TCGA-CM-4743-01 11 20940813 20940813 G T NELL1 Missense_Mutation p.S231I 0.16 deleterious(0.01) probably_damaging(0.947) TCGA-CM-4743-01 11 224175 224175 A C SIRT3 Missense_Mutation p.I291S 0.20 deleterious(0.01) probably_damaging(1) TCGA-CM-4743-01 11 2424212 2424212 A C TSSC4 Missense_Mutation p.S117R 0.19 tolerated(0.07) benign(0.406) TCGA-CM-4743-01 11 3398934 3398934 C A ZNF195 Intron 0.22 TCGA-CM-4743-01 11 34477599 34477599 G A CAT Silent p.A251A 0.21 TCGA-CM-4743-01 11 35308440 35308440 G A SLC1A2 Missense_Mutation p.R384C 0.23 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 11 35641812 35641812 C T FJX1 3'UTR 0.19 TCGA-CM-4743-01 11 3681110 3681110 T C ART1 Missense_Mutation p.Y121H 0.22 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 11 380010 380010 G A B4GALNT4 Missense_Mutation p.R878H 0.23 tolerated(0.17) unknown(0) TCGA-CM-4743-01 11 44080238 44080238 G A ACCSL Missense_Mutation p.R538Q 0.19 tolerated(0.16) benign(0.031) TCGA-CM-4743-01 11 45928456 45928456 G - C11orf94 Frame_Shift_Del p.L47Wfs*58 0.20 TCGA-CM-4743-01 11 47741597 47741598 - T FNBP4 Frame_Shift_Ins p.W950Vfs*7 0.19 TCGA-CM-4743-01 11 500566 500566 G A RNH1 Missense_Mutation p.R64C 0.19 tolerated(0.11) benign(0.004) TCGA-CM-4743-01 11 55563879 55563879 T C OR5D14 Missense_Mutation p.V283A 0.23 deleterious(0.01) possibly_damaging(0.501) TCGA-CM-4743-01 11 55579000 55579000 G A OR5L1 Missense_Mutation p.V20I 0.18 tolerated(0.33) benign(0.002) TCGA-CM-4743-01 11 56258002 56258002 G T OR5M8 Missense_Mutation p.P282H 0.20 deleterious(0) probably_damaging(0.995) TCGA-CM-4743-01 11 5653756 5653756 T C TRIM34 Silent p.F65F 0.20 TCGA-CM-4743-01 11 5717765 5717765 A - TRIM22 Frame_Shift_Del p.K103Nfs*31 0.16 TCGA-CM-4743-01 11 5798919 5798919 A G OR52N5 Missense_Mutation p.F316L 0.14 tolerated(1) benign(0.002) TCGA-CM-4743-01 11 58384254 58384254 C T ZFP91 Missense_Mutation p.H390Y 0.07 deleterious(0) probably_damaging(0.996) TCGA-CM-4743-01 11 60156997 60156997 A G MS4A7 Silent p.S158S 0.22 TCGA-CM-4743-01 11 60476206 60476207 - C MS4A8 Frame_Shift_Ins p.H164Pfs*82 0.20 TCGA-CM-4743-01 11 61503230 61503230 C T DAGLA Missense_Mutation p.T411M 0.18 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 11 62286943 62286943 A G AHNAK Silent p.F4982F 0.23 TCGA-CM-4743-01 11 62299046 62299046 A G AHNAK Missense_Mutation p.M948T 0.15 benign(0.053) TCGA-CM-4743-01 11 62362103 62362103 G A MTA2 Missense_Mutation p.A526V 0.17 tolerated_low_confidence(0.33) benign(0.001) TCGA-CM-4743-01 11 62402384 62402384 G A GANAB Missense_Mutation p.R157C 0.18 deleterious(0.03) probably_damaging(0.988) TCGA-CM-4743-01 11 62655872 62655872 C T SLC3A2 Missense_Mutation p.R535C 0.28 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 11 62678238 62678238 G A CHRM1 Missense_Mutation p.S112F 0.14 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 11 63531238 63531238 C A RTN3 3'Flank 0.33 TCGA-CM-4743-01 11 64066979 64066980 - C KCNK4 Frame_Shift_Ins p.E324Rfs*104 0.11 TCGA-CM-4743-01 11 64418006 64418006 C T NRXN2 Missense_Mutation p.R1008K 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-CM-4743-01 11 64435118 64435118 G T NRXN2 Missense_Mutation p.L468M 0.20 deleterious(0.04) benign(0.094) TCGA-CM-4743-01 11 64537024 64537024 C - SF1 Frame_Shift_Del p.S307Lfs*2 0.22 TCGA-CM-4743-01 11 64607700 64607700 G A CDC42BPG Missense_Mutation p.T158M 0.20 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 11 64665174 64665174 T C ATG2A Missense_Mutation p.Y1679C 0.27 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 11 64978799 64978799 C T CAPN1 3'UTR 0.26 TCGA-CM-4743-01 11 65373508 65373508 G - MAP3K11 Frame_Shift_Del p.R550Dfs*51 0.23 TCGA-CM-4743-01 11 65601518 65601518 G T SNX32 5'UTR 0.29 TCGA-CM-4743-01 11 6590002 6590002 C - DNHD1 Frame_Shift_Del p.T4259Pfs*33 0.17 TCGA-CM-4743-01 11 66033471 66033471 T C KLC2 Silent p.A530A 0.14 TCGA-CM-4743-01 11 66082467 66082467 C T CD248 Missense_Mutation p.E678K 0.16 tolerated(0.12) benign(0.001) TCGA-CM-4743-01 11 66189662 66189662 G A NPAS4 Missense_Mutation p.G83S 0.21 deleterious(0.01) probably_damaging(1) TCGA-CM-4743-01 11 66325497 66325497 G T CTD-3074O7.2 3'Flank 0.24 TCGA-CM-4743-01 11 66472515 66472515 G T SPTBN2 Silent p.A744A 0.29 TCGA-CM-4743-01 11 6653993 6653993 C T DCHS1 Missense_Mutation p.R917Q 0.25 tolerated(1) benign(0.075) TCGA-CM-4743-01 11 6654670 6654670 C A DCHS1 Missense_Mutation p.G810C 0.17 deleterious(0.04) probably_damaging(1) TCGA-CM-4743-01 11 67134942 67134942 C T CLCF1 Missense_Mutation p.A58T 0.21 tolerated(0.15) benign(0.378) TCGA-CM-4743-01 11 67266223 67266223 G T PITPNM1 Missense_Mutation p.P443H 0.22 tolerated(0.38) benign(0.007) TCGA-CM-4743-01 11 67400437 67400437 T G TBX10 Silent p.T229T 0.18 TCGA-CM-4743-01 11 67812541 67812541 C T TCIRG1 Silent p.G379G 0.22 TCGA-CM-4743-01 11 68458420 68458420 G A GAL Missense_Mutation p.A113T 0.27 tolerated(0.98) benign(0.016) TCGA-CM-4743-01 11 68700794 68700794 C T IGHMBP2 Silent p.S421S 0.16 TCGA-CM-4743-01 11 69062988 69062988 A G MYEOV Intron 0.05 TCGA-CM-4743-01 11 7064808 7064808 C A NLRP14 Missense_Mutation p.S517R 0.20 tolerated(0.08) possibly_damaging(0.894) TCGA-CM-4743-01 11 71146383 71146383 C A DHCR7 3'UTR 0.11 TCGA-CM-4743-01 11 75282928 75282928 C A SERPINH1 Missense_Mutation p.H353N 0.19 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 11 8752629 8752629 G A ST5 Missense_Mutation p.R70W 0.22 tolerated_low_confidence(1) benign(0) TCGA-CM-4743-01 11 89531491 89531491 C T TRIM49 Missense_Mutation p.C389Y 0.19 tolerated(1) benign(0.002) TCGA-CM-4743-01 11 94180411 94180411 G A MRE11A Missense_Mutation p.S586L 0.20 tolerated_low_confidence(0.49) benign(0) TCGA-CM-4743-01 11 94231406 94231406 C T ANKRD49 Missense_Mutation p.T143M 0.19 tolerated(0.05) possibly_damaging(0.876) TCGA-CM-4743-01 11 94279732 94279733 - T FUT4 3'UTR 0.10 TCGA-CM-4743-01 11 94328518 94328518 T G PIWIL4 Silent p.A398A 0.23 TCGA-CM-4743-01 11 9715715 9715715 C T SWAP70 Missense_Mutation p.T41M 0.18 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 12 103352463 103352463 C T ASCL1 Silent p.N147N 0.47 TCGA-CM-4743-01 12 104461820 104461820 T C HCFC2 Silent p.G136G 0.44 TCGA-CM-4743-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.38 TCGA-CM-4743-01 12 109278847 109278847 G A DAO Missense_Mutation p.R22H 0.53 tolerated(0.38) benign(0.003) TCGA-CM-4743-01 12 115115415 115115415 C T TBX3 Missense_Mutation p.R304Q 0.46 deleterious(0.01) probably_damaging(0.936) TCGA-CM-4743-01 12 115121068 115121068 T - TBX3 5'UTR 0.15 TCGA-CM-4743-01 12 120616486 120616486 C A GCN1L1 Missense_Mutation p.G201V 0.24 probably_damaging(0.999) TCGA-CM-4743-01 12 120621462 120621462 G A GCN1L1 Silent p.A112A 0.22 TCGA-CM-4743-01 12 121416664 121416664 T C HNF1A Silent p.G31G 0.42 TCGA-CM-4743-01 12 121712281 121712281 G - CAMKK2 Frame_Shift_Del p.Q17Rfs*27 0.34 TCGA-CM-4743-01 12 123187434 123187434 G T HCAR2 Missense_Mutation p.H133N 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-CM-4743-01 12 123414592 123414592 T C ABCB9 Missense_Mutation p.T723A 0.17 deleterious(0.05) benign(0.04) TCGA-CM-4743-01 12 123810083 123810083 C T SBNO1 Missense_Mutation p.G647R 0.44 deleterious(0.01) probably_damaging(0.98) TCGA-CM-4743-01 12 132212936 132212936 G A SFSWAP Silent p.A348A 0.41 TCGA-CM-4743-01 12 133384641 133384641 C T GOLGA3 Silent p.T338T 0.41 TCGA-CM-4743-01 12 15654551 15654551 C T PTPRO Intron 0.23 TCGA-CM-4743-01 12 20522502 20522502 C A PDE3A Missense_Mutation p.A95E 0.28 tolerated_low_confidence(0.32) benign(0) TCGA-CM-4743-01 12 21680686 21680686 G T C12orf39 Missense_Mutation p.Q57H 0.18 tolerated(0.12) probably_damaging(0.944) TCGA-CM-4743-01 12 27845786 27845786 A G PPFIBP1 Missense_Mutation p.S1003G 0.16 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-CM-4743-01 12 30790080 30790080 A G IPO8 Missense_Mutation p.L844P 0.21 deleterious(0) probably_damaging(0.992) TCGA-CM-4743-01 12 31116939 31116939 G A TSPAN11 Missense_Mutation p.G88D 0.18 tolerated(0.47) benign(0.053) TCGA-CM-4743-01 12 32900030 32900031 - T YARS2 3'UTR 0.23 TCGA-CM-4743-01 12 34178910 34178910 T - ALG10 Frame_Shift_Del p.F162Lfs*4 0.19 TCGA-CM-4743-01 12 39997743 39997745 CTC - ABCD2 In_Frame_Del p.G490del 0.15 TCGA-CM-4743-01 12 45568357 45568357 G T PLEKHA8P1 RNA 0.19 TCGA-CM-4743-01 12 4721803 4721803 A G DYRK4 Missense_Mutation p.T414A 0.25 tolerated(0.29) benign(0.003) TCGA-CM-4743-01 12 48110672 48110672 C T ENDOU Splice_Site p.X184_splice 0.20 TCGA-CM-4743-01 12 48578410 48578410 G - C12orf68 Frame_Shift_Del p.D171Tfs*76 0.22 TCGA-CM-4743-01 12 48921749 48921749 G A OR8S1 Missense_Mutation p.A315T 0.24 tolerated(0.23) benign(0.001) TCGA-CM-4743-01 12 4922378 4922378 G A KCNA6 3'UTR 0.21 TCGA-CM-4743-01 12 4922526 4922527 - G KCNA6 3'UTR 0.18 TCGA-CM-4743-01 12 49360212 49360212 A G WNT10B Missense_Mutation p.L279P 0.18 tolerated(0.06) possibly_damaging(0.837) TCGA-CM-4743-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.23 TCGA-CM-4743-01 12 49420523 49420523 C - KMT2D Frame_Shift_Del p.A5076Hfs*2 0.10 TCGA-CM-4743-01 12 49427679 49427679 C T KMT2D Silent p.Q3603Q 0.16 TCGA-CM-4743-01 12 49433960 49433960 G - KMT2D Frame_Shift_Del p.S2532Lfs*11 0.20 TCGA-CM-4743-01 12 50190580 50190580 G T NCKAP5L Missense_Mutation p.P355T 0.32 tolerated_low_confidence(0.06) benign(0.024) TCGA-CM-4743-01 12 51252738 51252738 A G TMPRSS12 Missense_Mutation p.D185G 0.30 deleterious(0.01) benign(0.285) TCGA-CM-4743-01 12 51458212 51458212 T C CSRNP2 Missense_Mutation p.I317V 0.24 tolerated(0.36) benign(0.007) TCGA-CM-4743-01 12 51717863 51717863 G A BIN2 Silent p.G8G 0.22 TCGA-CM-4743-01 12 52379121 52379121 G - ACVR1B Frame_Shift_Del p.T418Pfs*16 0.28 TCGA-CM-4743-01 12 52385715 52385715 C T ACVR1B Nonsense_Mutation p.R485* 0.19 TCGA-CM-4743-01 12 52680952 52680952 T C KRT81 Missense_Mutation p.N394S 0.23 deleterious(0.04) possibly_damaging(0.536) TCGA-CM-4743-01 12 52910957 52910957 A G KRT5 Silent p.H384H 0.21 TCGA-CM-4743-01 12 53164965 53164965 C T KRT76 Silent p.Q434Q 0.20 TCGA-CM-4743-01 12 53207637 53207637 C T KRT4 Missense_Mutation p.R69Q 0.21 tolerated(0.29) benign(0.012) TCGA-CM-4743-01 12 53215854 53215854 A C KRT79 Silent p.T470T 0.09 TCGA-CM-4743-01 12 53491746 53491746 T A IGFBP6 Missense_Mutation p.L82Q 0.28 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 12 53682451 53682451 G A ESPL1 Missense_Mutation p.R1559Q 0.19 tolerated(0.59) benign(0.002) TCGA-CM-4743-01 12 54379194 54379194 C T HOXC10 Missense_Mutation p.P51S 0.28 tolerated(0.08) benign(0.351) TCGA-CM-4743-01 12 54379402 54379402 C T HOXC10 Missense_Mutation p.A120V 0.19 tolerated(0.13) benign(0.228) TCGA-CM-4743-01 12 54635433 54635433 T - CBX5 3'UTR 0.20 TCGA-CM-4743-01 12 54744518 54744518 C A COPZ1 3'UTR 0.29 TCGA-CM-4743-01 12 54932673 54932673 C A NCKAP1L Silent p.A1063A 0.22 TCGA-CM-4743-01 12 55863619 55863619 A - OR6C70 Frame_Shift_Del p.Y102Tfs*12 0.22 TCGA-CM-4743-01 12 5603685 5603685 C T NTF3 Missense_Mutation p.P115L 0.17 deleterious(0) possibly_damaging(0.585) TCGA-CM-4743-01 12 56330814 56330814 G T DGKA Missense_Mutation p.K26N 0.21 deleterious(0.01) possibly_damaging(0.501) TCGA-CM-4743-01 12 57549989 57549989 G A LRP1 Missense_Mutation p.S447N 0.39 possibly_damaging(0.882) TCGA-CM-4743-01 12 62777737 62777737 A C USP15 Missense_Mutation p.K402N 0.40 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 12 6573915 6573915 C T VAMP1 Intron 0.26 TCGA-CM-4743-01 12 66725163 66725163 C T HELB Missense_Mutation p.S967F 0.14 deleterious(0.02) possibly_damaging(0.907) TCGA-CM-4743-01 12 6682399 6682399 G A CHD4 Missense_Mutation p.R1800C 0.23 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 12 67698446 67698446 A G CAND1 Missense_Mutation p.Q452R 0.50 deleterious(0.01) possibly_damaging(0.907) TCGA-CM-4743-01 12 68051820 68051820 G A DYRK2 Missense_Mutation p.R378H 0.40 deleterious(0) probably_damaging(0.953) TCGA-CM-4743-01 12 7293854 7293854 G T CLSTN3 Missense_Mutation p.W447L 0.22 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 12 7967023 7967023 A G SLC2A14 Silent p.D484D 0.07 TCGA-CM-4743-01 12 80665543 80665543 C A OTOGL Silent p.T869T 0.40 TCGA-CM-4743-01 12 88524075 88524075 A G CEP290 Silent p.Y213Y 0.16 TCGA-CM-4743-01 12 93285429 93285429 G A EEA1 Silent p.D31D 0.28 TCGA-CM-4743-01 12 94631524 94631524 C T PLXNC1 Missense_Mutation p.R689W 0.44 deleterious(0.01) benign(0.005) TCGA-CM-4743-01 13 101707737 101707737 C T NALCN Silent p.A1709A 0.21 TCGA-CM-4743-01 13 102568927 102568927 C T FGF14 Intron 0.21 TCGA-CM-4743-01 13 103280255 103280255 A G TPP2 Missense_Mutation p.T333A 0.23 tolerated(1) benign(0.026) TCGA-CM-4743-01 13 103441528 103441528 C T KDELC1 Missense_Mutation p.R376H 0.23 deleterious(0) probably_damaging(0.993) TCGA-CM-4743-01 13 103518189 103518189 C T BIVM-ERCC5 Silent p.D1135D 0.20 TCGA-CM-4743-01 13 103518285 103518285 G A ERCC5 Intron 0.17 TCGA-CM-4743-01 13 113200060 113200060 G T TUBGCP3 Missense_Mutation p.L430M 0.15 deleterious(0.04) probably_damaging(0.98) TCGA-CM-4743-01 13 113798351 113798351 A G F10 Missense_Mutation p.N230S 0.27 tolerated(0.87) benign(0.001) TCGA-CM-4743-01 13 28519580 28519580 G A ATP5EP2 3'UTR 0.05 TCGA-CM-4743-01 13 28519601 28519601 A G ATP5EP2 3'UTR 0.06 TCGA-CM-4743-01 13 29599862 29599862 T C MTUS2 Silent p.L353L 0.24 TCGA-CM-4743-01 13 29933476 29933476 C T MTUS2 Missense_Mutation p.R1005W 0.17 deleterious(0) possibly_damaging(0.85) TCGA-CM-4743-01 13 30096572 30096572 G C SLC7A1 Silent p.P357P 0.19 TCGA-CM-4743-01 13 36424872 36424873 - A DCLK1 Intron 0.16 TCGA-CM-4743-01 13 36699918 36699918 G A DCLK1 Silent p.S119S 0.20 TCGA-CM-4743-01 13 36909379 36909379 C T SPG20 Missense_Mutation p.V197I 0.17 deleterious(0.02) benign(0.15) TCGA-CM-4743-01 13 37678513 37678513 T A CSNK1A1L Missense_Mutation p.Y294F 0.05 tolerated_low_confidence(0.09) benign(0.013) TCGA-CM-4743-01 13 41704927 41704927 C T KBTBD6 Missense_Mutation p.R574H 0.23 tolerated(0.59) benign(0) TCGA-CM-4743-01 13 46093165 46093165 G A COG3 Missense_Mutation p.C697Y 0.25 deleterious(0) probably_damaging(0.94) TCGA-CM-4743-01 13 49794672 49794672 C T MLNR Missense_Mutation p.R67W 0.32 deleterious(0) probably_damaging(0.982) TCGA-CM-4743-01 13 52606975 52606975 G A UTP14C 3'UTR 0.21 TCGA-CM-4743-01 13 52989879 52989879 G A VPS36 3'UTR 0.23 TCGA-CM-4743-01 13 77786285 77786285 A G MYCBP2 Missense_Mutation p.L985P 0.22 probably_damaging(0.994) TCGA-CM-4743-01 13 77900636 77900636 C - MYCBP2 Frame_Shift_Del p.G54Afs*15 0.24 TCGA-CM-4743-01 13 78492442 78492442 C T EDNRB Silent p.P179P 0.23 TCGA-CM-4743-01 13 88331818 88331818 G A SLITRK5 3'UTR 0.17 TCGA-CM-4743-01 13 95696583 95696583 C A ABCC4 Missense_Mutation p.R1189M 0.26 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 13 95735432 95735432 A - ABCC4 Frame_Shift_Del p.L883Wfs*7 0.19 TCGA-CM-4743-01 14 102695927 102695927 G A MOK Missense_Mutation p.P350L 0.25 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 14 103996436 103996436 G A TRMT61A Missense_Mutation p.G41S 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 14 105848877 105848877 G A PACS2 Missense_Mutation p.E493K 0.25 tolerated(0.08) possibly_damaging(0.508) TCGA-CM-4743-01 14 105946044 105946044 C - CRIP2 3'Flank 0.13 TCGA-CM-4743-01 14 106091301 106091301 T C IGHG4 Missense_Mutation p.E198G 0.17 deleterious(0.01) possibly_damaging(0.853) TCGA-CM-4743-01 14 19563232 19563232 T C POTEG Intron 0.42 TCGA-CM-4743-01 14 21542825 21542825 C T ARHGEF40 Silent p.T312T 0.23 TCGA-CM-4743-01 14 21792904 21792904 G A RPGRIP1 Silent p.L630L 0.20 TCGA-CM-4743-01 14 21955657 21955657 T C TOX4 Silent p.P41P 0.06 TCGA-CM-4743-01 14 23746303 23746303 G T HOMEZ Missense_Mutation p.P45H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 14 23821401 23821401 G A SLC22A17 Missense_Mutation p.T8M 0.17 deleterious(0) probably_damaging(0.985) TCGA-CM-4743-01 14 24028899 24028899 C T AP1G2 3'UTR 0.24 TCGA-CM-4743-01 14 24648892 24648892 C - REC8 Frame_Shift_Del p.P471Qfs*58 0.13 TCGA-CM-4743-01 14 24656320 24656320 C T IPO4 Missense_Mutation p.A209T 0.28 tolerated(0.08) probably_damaging(0.971) TCGA-CM-4743-01 14 24709610 24709610 C A TINF2 Intron 0.14 TCGA-CM-4743-01 14 24724031 24724031 C T TGM1 Splice_Site p.X643_splice 0.24 TCGA-CM-4743-01 14 24807722 24807722 C A RIPK3 Missense_Mutation p.G175W 0.16 deleterious(0.03) benign(0.135) TCGA-CM-4743-01 14 24886402 24886402 G A NYNRIN Missense_Mutation p.R1816H 0.25 deleterious_low_confidence(0.04) benign(0.04) TCGA-CM-4743-01 14 31785148 31785148 C A HEATR5A Missense_Mutation p.S1349I 0.28 deleterious(0) probably_damaging(0.96) TCGA-CM-4743-01 14 45565407 45565407 C T PRPF39 Silent p.H142H 0.20 TCGA-CM-4743-01 14 45603581 45603581 T C FKBP3 Missense_Mutation p.K27E 0.19 tolerated(0.26) benign(0.008) TCGA-CM-4743-01 14 50295789 50295789 A G NEMF Silent p.H405H 0.14 TCGA-CM-4743-01 14 51224331 51224331 G A NIN Silent p.T1139T 0.21 TCGA-CM-4743-01 14 52485973 52485973 C T NID2 Missense_Mutation p.R945H 0.26 tolerated(0.17) benign(0.014) TCGA-CM-4743-01 14 54417051 54417051 C T BMP4 Missense_Mutation p.R309Q 0.27 tolerated(0.15) possibly_damaging(0.87) TCGA-CM-4743-01 14 61115479 61115479 G A SIX1 Silent p.Y143Y 0.16 TCGA-CM-4743-01 14 62233931 62233931 T C SNAPC1 Missense_Mutation p.I97T 0.16 deleterious(0.03) probably_damaging(0.956) TCGA-CM-4743-01 14 64194151 64194151 A G SGPP1 Missense_Mutation p.M171T 0.15 deleterious(0) probably_damaging(0.978) TCGA-CM-4743-01 14 64520260 64520260 C T SYNE2 Missense_Mutation p.T3210I 0.24 benign(0.133) TCGA-CM-4743-01 14 67635650 67635650 G T GPHN Missense_Mutation p.G659V 0.20 deleterious(0) possibly_damaging(0.808) TCGA-CM-4743-01 14 68217675 68217675 G - ZFYVE26 Intron 0.20 TCGA-CM-4743-01 14 68290312 68290312 C T RAD51B Missense_Mutation p.R18C 0.18 tolerated(0.09) benign(0.112) TCGA-CM-4743-01 14 69256903 69256903 G A ZFP36L1 Missense_Mutation p.P122S 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CM-4743-01 14 71197503 71197503 G - MAP3K9 Frame_Shift_Del p.P984Qfs*74 0.10 TCGA-CM-4743-01 14 73958623 73958623 C A HEATR4 Intron 0.15 TCGA-CM-4743-01 14 74180504 74180504 C - PNMA1 5'UTR 0.21 TCGA-CM-4743-01 14 74189443 74189443 G A ELMSAN1 Silent p.S894S 0.19 TCGA-CM-4743-01 14 75376469 75376469 A G RPS6KL1 Silent p.P349P 0.17 TCGA-CM-4743-01 14 77257076 77257076 A G ANGEL1 Missense_Mutation p.V577A 0.21 tolerated(0.21) benign(0.045) TCGA-CM-4743-01 14 77950770 77950770 C T ISM2 Missense_Mutation p.A175T 0.21 tolerated(0.38) unknown(0) TCGA-CM-4743-01 14 78397871 78397871 T C ADCK1 Missense_Mutation p.I406T 0.20 deleterious(0) probably_damaging(0.94) TCGA-CM-4743-01 14 92471777 92471777 A G TRIP11 Missense_Mutation p.I848T 0.19 deleterious(0) benign(0.22) TCGA-CM-4743-01 14 92624035 92624035 G A CPSF2 Missense_Mutation p.R543H 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CM-4743-01 14 92915526 92915526 C T SLC24A4 Silent p.S282S 0.16 TCGA-CM-4743-01 14 94524238 94524238 A G DDX24 Missense_Mutation p.V640A 0.29 deleterious(0.03) probably_damaging(0.975) TCGA-CM-4743-01 14 94640826 94640826 C A PPP4R4 Silent p.A8A 0.22 TCGA-CM-4743-01 14 94642419 94642419 T C PPP4R4 Missense_Mutation p.V49A 0.23 deleterious(0) possibly_damaging(0.873) TCGA-CM-4743-01 14 94770782 94770782 G C SERPINA6 Missense_Mutation p.F397L 0.21 tolerated(0.22) benign(0.101) TCGA-CM-4743-01 14 94936060 94936060 G T SERPINA9 Missense_Mutation p.P58T 0.23 tolerated(0.41) possibly_damaging(0.466) TCGA-CM-4743-01 14 97299907 97299907 A - VRK1 Frame_Shift_Del p.K35Rfs*5 0.24 TCGA-CM-4743-01 14 99640672 99640672 G A BCL11B Missense_Mutation p.A834V 0.24 deleterious(0) possibly_damaging(0.901) TCGA-CM-4743-01 15 100942969 100942969 G A CERS3 Silent p.N367N 0.17 TCGA-CM-4743-01 15 22332672 22332672 G A RP11-69H14.6 RNA 0.11 TCGA-CM-4743-01 15 23261074 23261074 C T GOLGA8I Missense_Mutation p.A250V 0.24 tolerated(0.06) possibly_damaging(0.596) TCGA-CM-4743-01 15 23686778 23686778 G A GOLGA6L2 Missense_Mutation p.R282W 0.17 probably_damaging(0.942) TCGA-CM-4743-01 15 27188544 27188544 A - GABRA5 Frame_Shift_Del p.A356Pfs*15 0.21 TCGA-CM-4743-01 15 27772703 27772703 G A GABRG3 Silent p.A330A 0.20 TCGA-CM-4743-01 15 28437250 28437250 A G HERC2 Missense_Mutation p.C2770R 0.23 benign(0) TCGA-CM-4743-01 15 29346701 29346701 C T APBA2 Missense_Mutation p.T205I 0.20 deleterious_low_confidence(0.01) benign(0.005) TCGA-CM-4743-01 15 34638168 34638168 G A NUTM1 5'UTR 0.24 TCGA-CM-4743-01 15 35085734 35085734 C T ACTC1 Missense_Mutation p.V56I 0.18 tolerated_low_confidence(0.13) benign(0.071) TCGA-CM-4743-01 15 40582997 40582997 C T PLCB2 Silent p.A1026A 0.21 TCGA-CM-4743-01 15 40699841 40699841 G A IVD Missense_Mutation p.R53H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 15 41060083 41060083 A T DNAJC17 3'UTR 0.31 TCGA-CM-4743-01 15 42363699 42363699 G T PLA2G4D Missense_Mutation p.L542I 0.20 tolerated(0.53) benign(0.026) TCGA-CM-4743-01 15 43527969 43527969 C A TGM5 Missense_Mutation p.G471V 0.24 deleterious(0.02) possibly_damaging(0.611) TCGA-CM-4743-01 15 43827409 43827409 G A PPIP5K1 Silent p.S1255S 0.26 TCGA-CM-4743-01 15 49081139 49081139 C T CEP152 Silent p.V344V 0.25 TCGA-CM-4743-01 15 51031946 51031946 T C SPPL2A Missense_Mutation p.T222A 0.19 tolerated(0.11) possibly_damaging(0.724) TCGA-CM-4743-01 15 52357259 52357259 C T MAPK6 3'UTR 0.20 TCGA-CM-4743-01 15 55912175 55912175 C T PRTG 3'UTR 0.22 TCGA-CM-4743-01 15 58007005 58007005 A - POLR2M 3'UTR 0.19 TCGA-CM-4743-01 15 65392013 65392013 C - UBAP1L Frame_Shift_Del p.A247Hfs*22 0.15 TCGA-CM-4743-01 15 65621765 65621765 G - IGDCC3 Frame_Shift_Del p.P723Rfs*37 0.26 TCGA-CM-4743-01 15 66856252 66856252 G A LCTL Nonsense_Mutation p.R123* 0.25 TCGA-CM-4743-01 15 68506661 68506661 G T CLN6 Silent p.A88A 0.21 TCGA-CM-4743-01 15 68628146 68628146 C T ITGA11 Silent p.G438G 0.21 TCGA-CM-4743-01 15 71229121 71229121 T C LRRC49 Missense_Mutation p.C250R 0.26 tolerated(0.61) benign(0.002) TCGA-CM-4743-01 15 73660023 73660023 C T HCN4 Missense_Mutation p.G197S 0.33 tolerated_low_confidence(0.14) unknown(0) TCGA-CM-4743-01 15 74003478 74003478 C A CD276 Missense_Mutation p.L517M 0.20 tolerated(0.27) benign(0.406) TCGA-CM-4743-01 15 74043395 74043395 C T C15orf59 Missense_Mutation p.R26Q 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-CM-4743-01 15 74219716 74219716 T C LOXL1 Missense_Mutation p.Y198H 0.23 deleterious(0) probably_damaging(0.986) TCGA-CM-4743-01 15 74368295 74368295 C T GOLGA6A Missense_Mutation p.R199Q 0.14 tolerated(0.41) benign(0.186) TCGA-CM-4743-01 15 74473137 74473137 C T STRA6 Missense_Mutation p.G648E 0.23 tolerated(0.37) benign(0.013) TCGA-CM-4743-01 15 75500990 75500990 G A C15orf39 Silent p.Q867Q 0.26 TCGA-CM-4743-01 15 78398140 78398140 G A CIB2 Silent p.D161D 0.20 TCGA-CM-4743-01 15 79298688 79298688 T C RASGRF1 Missense_Mutation p.S652G 0.19 deleterious(0.02) possibly_damaging(0.812) TCGA-CM-4743-01 15 81166248 81166248 C A KIAA1199 Missense_Mutation p.L10I 0.18 tolerated_low_confidence(1) benign(0.008) TCGA-CM-4743-01 15 83491931 83491931 G A WHAMM Silent p.L450L 0.14 TCGA-CM-4743-01 15 83687586 83687586 T - BTBD1 Frame_Shift_Del p.K388Sfs*28 0.16 TCGA-CM-4743-01 15 90984824 90984824 A G IQGAP1 Missense_Mutation p.M246V 0.18 tolerated(0.32) benign(0.003) TCGA-CM-4743-01 15 91795652 91795652 G A SV2B Missense_Mutation p.R229Q 0.22 tolerated(0.4) benign(0.107) TCGA-CM-4743-01 15 99672646 99672646 G A SYNM Missense_Mutation p.G1360S 0.19 tolerated(0.06) possibly_damaging(0.856) TCGA-CM-4743-01 16 1291654 1291654 G - TPSAB1 Frame_Shift_Del p.M153Cfs*23 0.10 TCGA-CM-4743-01 16 15029093 15029093 T G NPIPA1 5'Flank 0.24 TCGA-CM-4743-01 16 16170192 16170192 C T ABCC1 Missense_Mutation p.T641M 0.13 tolerated(0.11) benign(0.007) TCGA-CM-4743-01 16 19718490 19718490 T - KNOP1 Frame_Shift_Del p.K373Nfs*2 0.11 TCGA-CM-4743-01 16 19725465 19725465 C A KNOP1 Missense_Mutation p.G298V 0.24 tolerated(0.29) benign(0.018) TCGA-CM-4743-01 16 2012253 2012253 G A RPS2 Missense_Mutation p.A243V 0.24 deleterious(0.02) possibly_damaging(0.859) TCGA-CM-4743-01 16 20837231 20837231 T C AC004381.6 Missense_Mutation p.L261P 0.21 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 16 21011679 21011679 G C DNAH3 Nonsense_Mutation p.Y2096* 0.19 TCGA-CM-4743-01 16 22337209 22337209 G A POLR3E Silent p.P492P 0.28 TCGA-CM-4743-01 16 22587948 22587948 G - RP11-368J21.3 RNA 0.15 TCGA-CM-4743-01 16 2283577 2283577 G A E4F1 Missense_Mutation p.G399R 0.23 tolerated(0.51) benign(0.004) TCGA-CM-4743-01 16 24828176 24828176 T C TNRC6A Missense_Mutation p.I1624T 0.19 deleterious(0) probably_damaging(0.99) TCGA-CM-4743-01 16 27454294 27454294 C - IL21R Frame_Shift_Del p.P123Lfs*4 0.20 TCGA-CM-4743-01 16 28948449 28948449 C T CD19 Missense_Mutation p.P397L 0.31 tolerated(0.11) probably_damaging(0.992) TCGA-CM-4743-01 16 29680466 29680466 T A SPN 3'UTR 0.15 TCGA-CM-4743-01 16 29680774 29680774 G T SPN 3'UTR 0.69 TCGA-CM-4743-01 16 29680938 29680938 C T SPN 3'UTR 0.33 TCGA-CM-4743-01 16 30581119 30581119 C A ZNF688 3'UTR 0.24 TCGA-CM-4743-01 16 30616650 30616650 G A ZNF689 Silent p.S146S 0.25 TCGA-CM-4743-01 16 30664401 30664401 G A PRR14 Missense_Mutation p.A161T 0.21 deleterious_low_confidence(0) possibly_damaging(0.545) TCGA-CM-4743-01 16 31382535 31382535 G T ITGAX Missense_Mutation p.R614M 0.20 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 16 31486068 31486068 T A TGFB1I1 Missense_Mutation p.I235N 0.24 deleterious(0) probably_damaging(0.99) TCGA-CM-4743-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.19 TCGA-CM-4743-01 16 3458653 3458653 C A ZNF174 Missense_Mutation p.R320S 0.22 deleterious(0.03) benign(0.282) TCGA-CM-4743-01 16 3613579 3613579 G A NLRC3 Silent p.F500F 0.22 TCGA-CM-4743-01 16 3633333 3633333 C A SLX4 Missense_Mutation p.G1640W 0.22 deleterious(0) possibly_damaging(0.711) TCGA-CM-4743-01 16 4733849 4733849 C T MGRN1 Nonsense_Mutation p.R512* 0.24 TCGA-CM-4743-01 16 48594725 48594725 T - N4BP1 Frame_Shift_Del p.N610Mfs*8 0.18 TCGA-CM-4743-01 16 4944500 4944500 G - PPL Frame_Shift_Del p.T455Qfs*37 0.21 TCGA-CM-4743-01 16 50745330 50745331 - G NOD2 Frame_Shift_Ins p.S506Vfs*73 0.21 TCGA-CM-4743-01 16 5077277 5077277 A G NAGPA Splice_Site p.X426_splice 0.14 TCGA-CM-4743-01 16 5094401 5094401 G - C16orf89 3'UTR 0.17 TCGA-CM-4743-01 16 51173829 51173829 G A SALL1 Silent p.C768C 0.21 TCGA-CM-4743-01 16 52553377 52553377 G A TOX3 Intron 0.24 TCGA-CM-4743-01 16 54967689 54967689 T G IRX5 Silent p.A452A 0.21 TCGA-CM-4743-01 16 560768 560768 G A RAB11FIP3 Silent p.E536E 0.23 TCGA-CM-4743-01 16 56441927 56441927 G A AMFR Silent p.S205S 0.17 TCGA-CM-4743-01 16 57554987 57554987 A C CCDC102A Missense_Mutation p.L305R 0.22 deleterious(0) possibly_damaging(0.865) TCGA-CM-4743-01 16 57608821 57608821 C T GPR114 Silent p.L435L 0.25 TCGA-CM-4743-01 16 57794238 57794238 G A KIFC3 Missense_Mutation p.R775C 0.17 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 16 58149340 58149340 G A C16orf80 Missense_Mutation p.R100C 0.19 deleterious(0) benign(0.15) TCGA-CM-4743-01 16 58705111 58705111 C - SLC38A7 Frame_Shift_Del p.V357Cfs*38 0.27 TCGA-CM-4743-01 16 61761092 61761092 G T CDH8 Missense_Mutation p.P481H 0.19 tolerated(0.23) probably_damaging(0.934) TCGA-CM-4743-01 16 66434799 66434799 G A CDH5 Missense_Mutation p.V573M 0.19 deleterious(0) probably_damaging(0.913) TCGA-CM-4743-01 16 67183702 67183702 G A B3GNT9 Silent p.D229D 0.09 TCGA-CM-4743-01 16 67221459 67221459 G - EXOC3L1 Frame_Shift_Del p.L237Wfs*13 0.33 TCGA-CM-4743-01 16 67266040 67266040 C T FHOD1 Missense_Mutation p.A702T 0.22 deleterious(0.03) probably_damaging(0.993) TCGA-CM-4743-01 16 67333378 67333378 C A KCTD19 Missense_Mutation p.G292C 0.23 deleterious(0) possibly_damaging(0.866) TCGA-CM-4743-01 16 67660490 67660490 G A CTCF Missense_Mutation p.E464K 0.28 tolerated(0.17) benign(0.082) TCGA-CM-4743-01 16 67778316 67778316 T C RANBP10 Missense_Mutation p.H148R 0.23 deleterious(0) possibly_damaging(0.673) TCGA-CM-4743-01 16 68087529 68087529 A C DUS2 Silent p.R79R 0.26 TCGA-CM-4743-01 16 68293540 68293540 C T PLA2G15 Missense_Mutation p.R407C 0.19 deleterious(0.03) benign(0.002) TCGA-CM-4743-01 16 70502765 70502767 TCT - FUK In_Frame_Del p.F228del 0.22 TCGA-CM-4743-01 16 71886239 71886239 G A ATXN1L 3'UTR 0.23 TCGA-CM-4743-01 16 72011335 72011335 G A PKD1L3 RNA 0.25 TCGA-CM-4743-01 16 72131655 72131655 C A DHX38 Silent p.P197P 0.18 TCGA-CM-4743-01 16 74384587 74384587 T - RP11-252A24.2 RNA 0.19 TCGA-CM-4743-01 16 75634035 75634035 A - ADAT1 3'UTR 0.17 TCGA-CM-4743-01 16 81060168 81060169 AG - CENPN Frame_Shift_Del p.R247Sfs*23 0.11 TCGA-CM-4743-01 16 84212910 84212910 C T TAF1C Silent p.R749R 0.21 TCGA-CM-4743-01 16 84623773 84623773 C T COTL1 Missense_Mutation p.V86I 0.20 tolerated(0.12) benign(0.157) TCGA-CM-4743-01 16 85024237 85024237 G A ZDHHC7 5'UTR 0.17 TCGA-CM-4743-01 16 85112028 85112028 G A KIAA0513 Missense_Mutation p.E264K 0.18 tolerated(0.1) benign(0.296) TCGA-CM-4743-01 16 85682237 85682237 C T GSE1 Silent p.R102R 0.14 TCGA-CM-4743-01 16 88008669 88008669 C A BANP 5'UTR 0.12 TCGA-CM-4743-01 16 88105699 88105699 G A BANP Missense_Mutation p.A457T 0.33 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CM-4743-01 16 88494491 88494491 C - ZNF469 Frame_Shift_Del p.P206Qfs*140 0.18 TCGA-CM-4743-01 16 88501143 88501143 C - ZNF469 Frame_Shift_Del p.Q2396Kfs*49 0.19 TCGA-CM-4743-01 16 88593297 88593297 G A ZFPM1 Missense_Mutation p.E160K 0.27 tolerated(0.06) benign(0.079) TCGA-CM-4743-01 16 88721699 88721699 C T MVD Missense_Mutation p.D269N 0.29 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 16 89839709 89839709 C T FANCA Missense_Mutation p.A662T 0.29 tolerated(0.31) possibly_damaging(0.483) TCGA-CM-4743-01 16 89845229 89845229 C T FANCA Silent p.A602A 0.28 TCGA-CM-4743-01 16 9857380 9857380 T - GRIN2A Frame_Shift_Del p.S1341Afs*56 0.20 TCGA-CM-4743-01 16 9858738 9858738 G A GRIN2A Missense_Mutation p.T888M 0.25 deleterious(0) possibly_damaging(0.863) TCGA-CM-4743-01 17 10258040 10258040 G A MYH13 Missense_Mutation p.T321M 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4743-01 17 11573026 11573026 C T DNAH9 Nonsense_Mutation p.R1090* 0.21 TCGA-CM-4743-01 17 11684467 11684467 G A DNAH9 Missense_Mutation p.R2565Q 0.21 probably_damaging(0.917) TCGA-CM-4743-01 17 12847417 12847417 G A ARHGAP44 Silent p.K255K 0.26 TCGA-CM-4743-01 17 1557119 1557119 C G PRPF8 Missense_Mutation p.S2060T 0.24 tolerated(0.44) benign(0.05) TCGA-CM-4743-01 17 15881280 15881280 T - ZSWIM7 3'UTR 0.12 TCGA-CM-4743-01 17 1703814 1703814 C T SMYD4 Missense_Mutation p.G292R 0.19 deleterious(0.04) possibly_damaging(0.451) TCGA-CM-4743-01 17 17700622 17700622 G - RAI1 Frame_Shift_Del p.A1455Pfs*21 0.19 TCGA-CM-4743-01 17 17943131 17943131 C T GID4 Missense_Mutation p.A118V 0.14 tolerated(0.26) benign(0.009) TCGA-CM-4743-01 17 18087802 18087802 C T ALKBH5 Missense_Mutation p.A82V 0.21 tolerated(0.44) benign(0.127) TCGA-CM-4743-01 17 18144014 18144014 G A LLGL1 Missense_Mutation p.V777M 0.29 tolerated(0.24) possibly_damaging(0.843) TCGA-CM-4743-01 17 18150606 18150606 C T FLII Silent p.E851E 0.28 TCGA-CM-4743-01 17 18226441 18226441 G A SMCR8 3'UTR 0.17 TCGA-CM-4743-01 17 18420585 18420585 T C CTD-2303H24.2 RNA 0.16 TCGA-CM-4743-01 17 18793178 18793178 C T PRPSAP2 Missense_Mutation p.A191V 0.22 deleterious(0.01) benign(0.04) TCGA-CM-4743-01 17 21730810 21730810 T G UBBP4 Missense_Mutation p.C38G 0.16 deleterious(0.02) benign(0.053) TCGA-CM-4743-01 17 25909744 25909744 C T KSR1 Missense_Mutation p.T61M 0.20 tolerated(0.08) benign(0.004) TCGA-CM-4743-01 17 2595149 2595149 T C CLUH Missense_Mutation p.Y1193C 0.33 tolerated(0.55) benign(0.002) TCGA-CM-4743-01 17 2598253 2598253 G - CLUH Frame_Shift_Del p.P878Rfs*12 0.18 TCGA-CM-4743-01 17 26966623 26966623 G C KIAA0100 Silent p.V351V 0.16 TCGA-CM-4743-01 17 27401221 27401221 C T TIAF1 5'UTR 0.27 TCGA-CM-4743-01 17 28548647 28548647 G A SLC6A4 Silent p.Y110Y 0.25 TCGA-CM-4743-01 17 28886400 28886400 C T TBC1D29 5'UTR 0.33 TCGA-CM-4743-01 17 29562982 29562982 G A NF1 Missense_Mutation p.R1306Q 0.18 tolerated(0.65) probably_damaging(0.986) TCGA-CM-4743-01 17 33448649 33448652 TCTC - FNDC8 5'UTR 0.17 TCGA-CM-4743-01 17 34050735 34050735 C T AP2B1 3'UTR 0.24 TCGA-CM-4743-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.22 TCGA-CM-4743-01 17 35518817 35518817 C T ACACA Missense_Mutation p.A1743T 0.19 deleterious(0) benign(0.275) TCGA-CM-4743-01 17 36646372 36646372 C T ARHGAP23 Missense_Mutation p.R1006C 0.06 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 17 36717810 36717810 G A SRCIN1 Missense_Mutation p.A530V 0.21 tolerated(0.13) benign(0.023) TCGA-CM-4743-01 17 37565966 37565966 A G MED1 Silent p.T836T 0.20 TCGA-CM-4743-01 17 37566171 37566171 C T MED1 Missense_Mutation p.R768Q 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CM-4743-01 17 37646865 37646865 C T CDK12 Missense_Mutation p.R663C 0.24 probably_damaging(0.997) TCGA-CM-4743-01 17 38080414 38080414 G A ORMDL3 Missense_Mutation p.R15W 0.24 tolerated(0.07) benign(0.001) TCGA-CM-4743-01 17 38172781 38172781 A G CSF3 Missense_Mutation p.Q119R 0.28 tolerated(0.18) benign(0.141) TCGA-CM-4743-01 17 38512370 38512370 G - RARA Frame_Shift_Del p.G429Vfs*214 0.14 TCGA-CM-4743-01 17 39658579 39658579 C T KRT13 Intron 0.23 TCGA-CM-4743-01 17 39670200 39670200 G T KRT15 3'UTR 0.20 TCGA-CM-4743-01 17 39684322 39684322 C A KRT19 Missense_Mutation p.A60S 0.21 tolerated(0.33) benign(0) TCGA-CM-4743-01 17 40817737 40817737 C - TUBG2 Frame_Shift_Del p.G247Afs*3 0.18 TCGA-CM-4743-01 17 41003742 41003742 G A AOC3 Missense_Mutation p.V128I 0.16 tolerated(0.24) benign(0.002) TCGA-CM-4743-01 17 42992749 42992749 G - GFAP Frame_Shift_Del p.R36Afs*38 0.34 TCGA-CM-4743-01 17 4457134 4457134 G A MYBBP1A Missense_Mutation p.R178W 0.31 tolerated(0.06) possibly_damaging(0.54) TCGA-CM-4743-01 17 45895745 45895745 C T OSBPL7 Missense_Mutation p.G163D 0.21 tolerated(0.15) benign(0.319) TCGA-CM-4743-01 17 45994016 45994016 C T SP2 Silent p.P193P 0.22 TCGA-CM-4743-01 17 4686323 4686324 - A TM4SF5 Frame_Shift_Ins p.Q193Tfs*10 0.24 TCGA-CM-4743-01 17 4999256 4999256 C T ZFP3 3'UTR 0.19 TCGA-CM-4743-01 17 5265013 5265013 G A RABEP1 Intron 0.26 TCGA-CM-4743-01 17 55083605 55083605 G T SCPEP1 3'UTR 0.20 TCGA-CM-4743-01 17 56083300 56083300 C A SRSF1 Missense_Mutation p.K138N 0.17 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 17 56166670 56166670 G A DYNLL2 3'UTR 0.24 TCGA-CM-4743-01 17 56353047 56353047 A G MPO Silent p.S407S 0.23 TCGA-CM-4743-01 17 62006508 62006508 T C CD79B 3'UTR 0.09 TCGA-CM-4743-01 17 65184562 65184562 G A HELZ Silent p.Y345Y 0.14 TCGA-CM-4743-01 17 66267518 66267518 C A SLC16A6 Silent p.P261P 0.19 TCGA-CM-4743-01 17 66987071 66987071 A - ABCA9 Frame_Shift_Del p.P1249Qfs*18 0.13 TCGA-CM-4743-01 17 68173879 68173879 T - KCNJ2 3'UTR 0.13 TCGA-CM-4743-01 17 6945988 6945988 G A SLC16A11 Silent p.T171T 0.21 TCGA-CM-4743-01 17 71344855 71344855 G - SDK2 Frame_Shift_Del p.R2017Gfs*28 0.21 TCGA-CM-4743-01 17 7219641 7219641 C T NEURL4 Missense_Mutation p.R1497Q 0.26 tolerated(0.4) benign(0.022) TCGA-CM-4743-01 17 72246094 72246094 G A TTYH2 Missense_Mutation p.R317H 0.06 deleterious(0) probably_damaging(0.989) TCGA-CM-4743-01 17 72322500 72322500 C T KIF19 Silent p.S4S 0.16 TCGA-CM-4743-01 17 72338810 72338810 C T KIF19 Silent p.G91G 0.18 TCGA-CM-4743-01 17 726880 726880 C T NXN Missense_Mutation p.A202T 0.18 deleterious(0) probably_damaging(0.975) TCGA-CM-4743-01 17 72791736 72791736 C G TMEM104 Missense_Mutation p.P201A 0.22 tolerated(0.37) benign(0.004) TCGA-CM-4743-01 17 72842920 72842920 G A GRIN2C Missense_Mutation p.A714V 0.27 deleterious(0) probably_damaging(0.995) TCGA-CM-4743-01 17 72916071 72916071 G A USH1G Missense_Mutation p.T287M 0.22 tolerated(0.12) benign(0.009) TCGA-CM-4743-01 17 7329811 7329811 G A C17orf74 Missense_Mutation p.M167I 0.24 tolerated(0.54) benign(0.216) TCGA-CM-4743-01 17 73487406 73487406 A G KIAA0195 Missense_Mutation p.Q419R 0.17 tolerated(0.16) probably_damaging(0.995) TCGA-CM-4743-01 17 74326693 74326693 A - PRPSAP1 Frame_Shift_Del p.F173Sfs*31 0.08 TCGA-CM-4743-01 17 7496107 7496107 C T FXR2 Missense_Mutation p.R545H 0.26 deleterious_low_confidence(0.02) benign(0.273) TCGA-CM-4743-01 17 76535957 76535957 G A DNAH17 Silent p.N846N 0.16 TCGA-CM-4743-01 17 7756376 7756376 G A KDM6B Missense_Mutation p.A1557T 0.12 possibly_damaging(0.749) TCGA-CM-4743-01 17 78083804 78083804 C T GAA Missense_Mutation p.R463W 0.21 deleterious(0) possibly_damaging(0.773) TCGA-CM-4743-01 17 78083828 78083828 G A GAA Missense_Mutation p.E471K 0.21 tolerated(0.61) benign(0.028) TCGA-CM-4743-01 17 78272295 78272295 G A RNF213 Silent p.P729P 0.21 TCGA-CM-4743-01 17 79411837 79411838 - C RP11-1055B8.7 Frame_Shift_Ins p.H888Pfs*192 0.22 TCGA-CM-4743-01 17 79650819 79650819 C T ARL16 Missense_Mutation p.A13T 0.23 deleterious_low_confidence(0.02) benign(0) TCGA-CM-4743-01 17 79653396 79653396 C T HGS Silent p.H59H 0.17 TCGA-CM-4743-01 17 79880477 79880477 G A MAFG 3'UTR 0.20 TCGA-CM-4743-01 17 8054002 8054002 G T PER1 Missense_Mutation p.A8D 0.13 deleterious_low_confidence(0.01) benign(0.372) TCGA-CM-4743-01 17 8132624 8132624 C T CTC1 Missense_Mutation p.R1051Q 0.17 tolerated(0.46) benign(0.078) TCGA-CM-4743-01 17 8272796 8272796 T C KRBA2 Missense_Mutation p.N379D 0.18 deleterious(0.01) possibly_damaging(0.587) TCGA-CM-4743-01 17 8647479 8647479 G A CCDC42 Missense_Mutation p.A36V 0.15 tolerated(0.06) benign(0.02) TCGA-CM-4743-01 17 8783945 8783945 C A PIK3R5 3'UTR 0.18 TCGA-CM-4743-01 17 973264 973264 C T ABR Missense_Mutation p.V321I 0.10 tolerated(0.15) benign(0.168) TCGA-CM-4743-01 17 9808547 9808547 G A RCVRN 5'UTR 0.21 TCGA-CM-4743-01 18 11752412 11752412 C T GNAL Intron 0.22 TCGA-CM-4743-01 18 12948103 12948103 G A SEH1L 5'UTR 0.18 TCGA-CM-4743-01 18 13015426 13015426 A T CEP192 Missense_Mutation p.T207S 0.18 tolerated(0.39) benign(0.306) TCGA-CM-4743-01 18 14748406 14748406 G - ANKRD30B 5'UTR 0.17 TCGA-CM-4743-01 18 19427018 19427018 G A MIB1 Silent p.S775S 0.25 TCGA-CM-4743-01 18 21121356 21121357 AG - NPC1 Frame_Shift_Del p.F763Cfs*8 0.19 TCGA-CM-4743-01 18 23759048 23759049 - A PSMA8 Frame_Shift_Ins p.N213Kfs*3 0.17 TCGA-CM-4743-01 18 24127806 24127806 C T KCTD1 Intron 0.22 TCGA-CM-4743-01 18 2747611 2747611 T C SMCHD1 Missense_Mutation p.V1298A 0.19 deleterious(0.01) probably_damaging(0.938) TCGA-CM-4743-01 18 29784212 29784212 C T MEP1B Nonsense_Mutation p.R146* 0.21 TCGA-CM-4743-01 18 3112338 3112338 G T MYOM1 Missense_Mutation p.P1126T 0.16 tolerated(0.14) benign(0.444) TCGA-CM-4743-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.22 TCGA-CM-4743-01 18 34385381 34385381 G A TPGS2 Missense_Mutation p.P113L 0.17 tolerated(0.07) possibly_damaging(0.66) TCGA-CM-4743-01 18 48190452 48190452 G A MAPK4 Missense_Mutation p.A42T 0.26 tolerated(1) benign(0.002) TCGA-CM-4743-01 18 48458685 48458685 C T ME2 Nonsense_Mutation p.R458* 0.19 TCGA-CM-4743-01 18 5410573 5410573 C T EPB41L3 Missense_Mutation p.A705T 0.27 deleterious(0) benign(0.045) TCGA-CM-4743-01 18 55282932 55282932 G T NARS Missense_Mutation p.L95M 0.19 deleterious(0.02) benign(0.399) TCGA-CM-4743-01 18 57134024 57134024 C T CCBE1 Missense_Mutation p.R167Q 0.23 tolerated(0.23) benign(0.003) TCGA-CM-4743-01 18 6264013 6264013 G A L3MBTL4 Missense_Mutation p.A51V 0.20 tolerated(0.24) benign(0.053) TCGA-CM-4743-01 18 6873431 6873432 - T ARHGAP28 Frame_Shift_Ins p.G169Wfs*4 0.16 TCGA-CM-4743-01 18 6942196 6942196 C T LAMA1 Missense_Mutation p.R3037H 0.20 tolerated(0.12) benign(0.102) TCGA-CM-4743-01 18 6975007 6975007 C T LAMA1 Missense_Mutation p.R2173Q 0.25 deleterious(0.04) possibly_damaging(0.882) TCGA-CM-4743-01 18 72114371 72114371 T C FAM69C Missense_Mutation p.K116E 0.23 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 18 74963008 74963008 G A GALR1 Silent p.S168S 0.24 TCGA-CM-4743-01 18 76753905 76753905 C T SALL3 Silent p.A638A 0.17 TCGA-CM-4743-01 18 77170736 77170736 C T NFATC1 Missense_Mutation p.T141M 0.18 tolerated(0.17) probably_damaging(0.978) TCGA-CM-4743-01 18 77917845 77917845 G - PARD6G Frame_Shift_Del p.Q314Rfs*78 0.32 TCGA-CM-4743-01 18 8406201 8406201 A G PTPRM 3'UTR 0.24 TCGA-CM-4743-01 18 9396508 9396508 A G TWSG1 Missense_Mutation p.S152G 0.17 tolerated(0.48) benign(0.006) TCGA-CM-4743-01 19 1003173 1003173 G A GRIN3B Silent p.T157T 0.18 TCGA-CM-4743-01 19 10434237 10434237 C T RAVER1 Silent p.A271A 0.27 TCGA-CM-4743-01 19 10625345 10625345 C T S1PR5 Missense_Mutation p.V115I 0.33 deleterious(0.05) benign(0.112) TCGA-CM-4743-01 19 10688005 10688005 C T AP1M2 Missense_Mutation p.V306M 0.15 deleterious(0.04) possibly_damaging(0.877) TCGA-CM-4743-01 19 1082961 1082961 C T HMHA1 Silent p.S896S 0.35 TCGA-CM-4743-01 19 1109748 1109748 G A SBNO2 Silent p.Y1019Y 0.19 TCGA-CM-4743-01 19 11560133 11560133 G A PRKCSH Missense_Mutation p.S498N 0.26 tolerated(0.1) possibly_damaging(0.751) TCGA-CM-4743-01 19 11943029 11943029 A G ZNF440 Silent p.G346G 0.12 TCGA-CM-4743-01 19 12826292 12826292 C T TNPO2 Missense_Mutation p.A165T 0.23 tolerated(0.55) benign(0.001) TCGA-CM-4743-01 19 1295841 1295841 C T EFNA2 Silent p.H146H 0.21 TCGA-CM-4743-01 19 13319755 13319755 G A CACNA1A Missense_Mutation p.R2199W 0.23 possibly_damaging(0.835) TCGA-CM-4743-01 19 13409858 13409858 G A CACNA1A Silent p.R863R 0.29 TCGA-CM-4743-01 19 14070284 14070284 G A DCAF15 Silent p.P404P 0.18 TCGA-CM-4743-01 19 14164285 14164285 G A PALM3 3'UTR 0.23 TCGA-CM-4743-01 19 14164427 14164427 G A PALM3 Missense_Mutation p.A671V 0.17 tolerated(0.41) benign(0.068) TCGA-CM-4743-01 19 14164511 14164511 G A PALM3 Missense_Mutation p.A643V 0.18 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 19 14518740 14518740 G A CD97 Silent p.K799K 0.20 TCGA-CM-4743-01 19 14593767 14593767 G A GIPC1 Missense_Mutation p.R8W 0.21 tolerated_low_confidence(0.1) benign(0.002) TCGA-CM-4743-01 19 15121653 15121653 C - CCDC105 Frame_Shift_Del p.P7Rfs*29 0.19 TCGA-CM-4743-01 19 15230299 15230299 G A ILVBL Missense_Mutation p.R282W 0.22 deleterious(0) probably_damaging(0.959) TCGA-CM-4743-01 19 15233594 15233594 G A ILVBL Missense_Mutation p.P209L 0.27 deleterious(0) possibly_damaging(0.885) TCGA-CM-4743-01 19 16319920 16319920 C T AP1M1 Missense_Mutation p.R160W 0.26 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 19 16629968 16629968 G A CHERP 3'UTR 0.15 TCGA-CM-4743-01 19 16632392 16632392 C A CHERP Missense_Mutation p.R685M 0.27 deleterious(0) probably_damaging(0.995) TCGA-CM-4743-01 19 16757994 16757994 A G SMIM7 3'UTR 0.18 TCGA-CM-4743-01 19 16973290 16973290 C T SIN3B Missense_Mutation p.R396C 0.22 deleterious(0) probably_damaging(0.977) TCGA-CM-4743-01 19 17316883 17316883 G A MYO9B Missense_Mutation p.G1727S 0.19 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 19 17434317 17434317 C T ANO8 3'UTR 0.21 TCGA-CM-4743-01 19 17615407 17615407 G A SLC27A1 Missense_Mutation p.A643T 0.21 tolerated(0.28) benign(0.001) TCGA-CM-4743-01 19 17955112 17955112 G - JAK3 Frame_Shift_Del p.Q39Sfs*108 0.12 TCGA-CM-4743-01 19 18092626 18092626 G A KCNN1 Missense_Mutation p.G203S 0.25 deleterious(0.02) probably_damaging(0.967) TCGA-CM-4743-01 19 1816443 1816443 A G REXO1 Missense_Mutation p.L1148P 0.22 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 19 1827572 1827572 G A REXO1 Missense_Mutation p.R406W 0.25 deleterious(0) possibly_damaging(0.65) TCGA-CM-4743-01 19 18497248 18497248 C A GDF15 Silent p.A83A 0.07 TCGA-CM-4743-01 19 18729197 18729197 G A TMEM59L Silent p.L265L 0.14 TCGA-CM-4743-01 19 18780069 18780069 C T KLHL26 3'UTR 0.23 TCGA-CM-4743-01 19 19369401 19369401 G A HAPLN4 Missense_Mutation p.R250C 0.23 deleterious(0) probably_damaging(0.995) TCGA-CM-4743-01 19 2111699 2111699 C T AP3D1 Silent p.A972A 0.26 TCGA-CM-4743-01 19 22575730 22575730 A - ZNF98 Frame_Shift_Del p.Y103Ifs*5 0.15 TCGA-CM-4743-01 19 23556621 23556621 G T ZNF91 Missense_Mutation p.P59Q 0.22 tolerated(0.05) benign(0.326) TCGA-CM-4743-01 19 30313406 30313406 A G CCNE1 Missense_Mutation p.M336V 0.21 tolerated(0.29) benign(0.007) TCGA-CM-4743-01 19 31040079 31040079 A C ZNF536 Missense_Mutation p.T1185P 0.26 deleterious_low_confidence(0.04) benign(0.008) TCGA-CM-4743-01 19 31768070 31768070 C - TSHZ3 Frame_Shift_Del p.A877Pfs*28 0.17 TCGA-CM-4743-01 19 31768490 31768490 C T TSHZ3 Missense_Mutation p.A737T 0.25 tolerated(0.58) probably_damaging(0.998) TCGA-CM-4743-01 19 33487079 33487079 G A RHPN2 Missense_Mutation p.R425W 0.17 deleterious(0.02) probably_damaging(1) TCGA-CM-4743-01 19 33871145 33871145 T C CEBPG 3'UTR 0.23 TCGA-CM-4743-01 19 34297862 34297862 G A KCTD15 Missense_Mutation p.V113I 0.15 tolerated(1) benign(0.004) TCGA-CM-4743-01 19 36038037 36038037 C T TMEM147 Missense_Mutation p.A149V 0.19 tolerated(0.56) benign(0.016) TCGA-CM-4743-01 19 36044082 36044082 C T ATP4A Missense_Mutation p.A870T 0.27 deleterious(0.02) possibly_damaging(0.457) TCGA-CM-4743-01 19 36111126 36111127 CT - HAUS5 Frame_Shift_Del p.L518Sfs*69 0.18 TCGA-CM-4743-01 19 36159536 36159536 C T UPK1A Missense_Mutation p.R89C 0.23 deleterious(0.02) possibly_damaging(0.816) TCGA-CM-4743-01 19 36210426 36210426 C T KMT2B Missense_Mutation p.A140V 0.23 unknown(0) TCGA-CM-4743-01 19 36214713 36214714 - G KMT2B Frame_Shift_Ins p.A1049Gfs*39 0.25 TCGA-CM-4743-01 19 36217196 36217196 C T KMT2B Silent p.D1315D 0.17 TCGA-CM-4743-01 19 36228048 36228048 G A KMT2B Silent p.Q2478Q 0.22 TCGA-CM-4743-01 19 36336327 36336327 C T NPHS1 Missense_Mutation p.A625T 0.17 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 19 38375815 38375815 T - WDR87 Frame_Shift_Del p.A2794Pfs*4 0.23 TCGA-CM-4743-01 19 39262606 39262606 G - LGALS7 Frame_Shift_Del p.R54Gfs*80 0.43 TCGA-CM-4743-01 19 39359952 39359952 G A RINL Missense_Mutation p.R525C 0.26 deleterious(0) probably_damaging(0.939) TCGA-CM-4743-01 19 39406677 39406677 C A SARS2 Silent p.T451T 0.25 TCGA-CM-4743-01 19 39421194 39421194 C A SARS2 Missense_Mutation p.E61D 0.24 tolerated(0.15) benign(0.004) TCGA-CM-4743-01 19 39660386 39660386 G - PAK4 Frame_Shift_Del p.A66Pfs*29 0.37 TCGA-CM-4743-01 19 39948328 39948328 G A SUPT5H Silent p.E85E 0.20 TCGA-CM-4743-01 19 40366216 40366216 G A FCGBP Missense_Mutation p.A4673V 0.26 possibly_damaging(0.867) TCGA-CM-4743-01 19 4037381 4037381 G A PIAS4 Silent p.S384S 0.14 TCGA-CM-4743-01 19 40520097 40520097 G T ZNF546 Missense_Mutation p.G307V 0.24 deleterious(0.02) probably_damaging(0.981) TCGA-CM-4743-01 19 40729005 40729005 G A CNTD2 Missense_Mutation p.P293L 0.24 deleterious_low_confidence(0) benign(0.054) TCGA-CM-4743-01 19 407955 407955 A G C2CD4C Missense_Mutation p.M136T 0.16 deleterious(0.01) benign(0.075) TCGA-CM-4743-01 19 40895843 40895843 G T HIPK4 5'UTR 0.27 TCGA-CM-4743-01 19 41265514 41265514 C T SNRPA Missense_Mutation p.P142L 0.23 tolerated(0.16) benign(0.043) TCGA-CM-4743-01 19 41383777 41383777 A G CYP2A7 Missense_Mutation p.M318T 0.18 deleterious(0.03) probably_damaging(0.984) TCGA-CM-4743-01 19 42383610 42383610 C - CD79A Frame_Shift_Del p.R131Gfs*61 0.34 TCGA-CM-4743-01 19 42729138 42729138 G A ZNF526 Missense_Mutation p.E195K 0.06 tolerated(0.19) possibly_damaging(0.696) TCGA-CM-4743-01 19 42797190 42797190 C T CIC Silent p.I1184I 0.23 TCGA-CM-4743-01 19 42797285 42797286 - A CIC Frame_Shift_Ins p.T1217Nfs*6 0.21 TCGA-CM-4743-01 19 42872646 42872646 G A MEGF8 Missense_Mutation p.G2038R 0.22 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 19 42911846 42911846 A G LIPE Missense_Mutation p.L585P 0.19 deleterious(0.03) probably_damaging(0.968) TCGA-CM-4743-01 19 42931194 42931194 C T LIPE Silent p.Q36Q 0.22 TCGA-CM-4743-01 19 43570731 43570731 A C PSG2 Missense_Mutation p.L329R 0.23 deleterious(0.03) benign(0.075) TCGA-CM-4743-01 19 43672035 43672035 A - PSG5 Intron 0.26 TCGA-CM-4743-01 19 43969663 43969663 G A LYPD3 Silent p.L21L 0.31 TCGA-CM-4743-01 19 44417835 44417835 G A ZNF45 Nonsense_Mutation p.R585* 0.21 TCGA-CM-4743-01 19 44514762 44514762 T C ZNF230 Silent p.L191L 0.23 TCGA-CM-4743-01 19 45262880 45262880 G - BCL3 3'UTR 0.19 TCGA-CM-4743-01 19 4529879 4529879 C T PLIN5 Splice_Site p.X86_splice 0.18 TCGA-CM-4743-01 19 45899596 45899596 G A PPP1R13L Missense_Mutation p.R271C 0.20 deleterious(0) benign(0.022) TCGA-CM-4743-01 19 46283130 46283130 G - DMPK Frame_Shift_Del p.P63Qfs*7 0.21 TCGA-CM-4743-01 19 46887123 46887123 G A PPP5C Silent p.E262E 0.24 TCGA-CM-4743-01 19 47569635 47569635 G A ZC3H4 Missense_Mutation p.T1297M 0.23 unknown(0) TCGA-CM-4743-01 19 47844159 47844159 C T C5AR2 Missense_Mutation p.R35C 0.24 tolerated(0.18) benign(0.332) TCGA-CM-4743-01 19 48047704 48047704 G T ZNF541 Silent p.P694P 0.20 TCGA-CM-4743-01 19 48374711 48374711 G A SULT2A1 3'UTR 0.22 TCGA-CM-4743-01 19 48876795 48876795 T G SYNGR4 Missense_Mutation p.S39A 0.24 tolerated(0.53) benign(0.217) TCGA-CM-4743-01 19 48892863 48892863 C T KDELR1 Missense_Mutation p.V100I 0.23 tolerated(0.71) benign(0.001) TCGA-CM-4743-01 19 48894662 48894662 G - KDELR1 5'UTR 0.09 TCGA-CM-4743-01 19 48965635 48965635 C T KCNJ14 Silent p.R218R 0.25 TCGA-CM-4743-01 19 49208326 49208326 T C FUT2 3'UTR 0.25 TCGA-CM-4743-01 19 49868803 49868803 C - DKKL1 Frame_Shift_Del p.M76Wfs*34 0.15 TCGA-CM-4743-01 19 49949891 49949891 G - PIH1D1 Frame_Shift_Del p.Q250Sfs*6 0.19 TCGA-CM-4743-01 19 50028011 50028011 G A FCGRT Silent p.A283A 0.20 TCGA-CM-4743-01 19 50360267 50360267 T C PTOV1 Silent p.C198C 0.22 TCGA-CM-4743-01 19 50827150 50827150 C - KCNC3 Frame_Shift_Del p.V354Cfs*74 0.22 TCGA-CM-4743-01 19 50885885 50885885 C A NR1H2 3'UTR 0.14 TCGA-CM-4743-01 19 50919866 50919866 G - POLD1 Splice_Site p.X987_splice 0.25 TCGA-CM-4743-01 19 52448815 52448815 G A ZNF613 Missense_Mutation p.R560H 0.20 tolerated(0.11) benign(0.001) TCGA-CM-4743-01 19 52468277 52468277 C T ZNF350 Missense_Mutation p.G477S 0.22 tolerated(0.05) possibly_damaging(0.77) TCGA-CM-4743-01 19 53086680 53086680 T C ZNF701 Silent p.H522H 0.24 TCGA-CM-4743-01 19 53959487 53959487 A G ZNF761 RNA 0.24 TCGA-CM-4743-01 19 54652195 54652195 A C CNOT3 Missense_Mutation p.S403R 0.09 tolerated(0.52) benign(0.001) TCGA-CM-4743-01 19 54967587 54967587 G - LENG8 Frame_Shift_Del p.G464Afs*44 0.19 TCGA-CM-4743-01 19 55105183 55105183 T C LILRA1 5'UTR 0.36 TCGA-CM-4743-01 19 55221613 55221613 C - AC098784.2 3'Flank 0.12 TCGA-CM-4743-01 19 55451396 55451396 G A NLRP7 Missense_Mutation p.A264V 0.16 tolerated(0.05) possibly_damaging(0.786) TCGA-CM-4743-01 19 55672044 55672044 G A DNAAF3 Nonsense_Mutation p.Q406* 0.17 TCGA-CM-4743-01 19 55715248 55715248 G A PTPRH Missense_Mutation p.T263I 0.20 unknown(0) TCGA-CM-4743-01 19 56001746 56001746 C A SSC5D Missense_Mutation p.P186H 0.26 probably_damaging(0.999) TCGA-CM-4743-01 19 56002276 56002276 G - SSC5D Frame_Shift_Del p.A244Rfs*192 0.20 TCGA-CM-4743-01 19 56413556 56413556 C T NLRP13 Silent p.Q878Q 0.19 TCGA-CM-4743-01 19 56511133 56511133 G T NLRP5 Silent p.L14L 0.27 TCGA-CM-4743-01 19 56701331 56701331 C A ZSCAN5B Missense_Mutation p.K451N 0.22 deleterious(0.02) benign(0.354) TCGA-CM-4743-01 19 57066704 57066704 T A ZFP28 Missense_Mutation p.N850K 0.21 tolerated_low_confidence(0.06) benign(0.055) TCGA-CM-4743-01 19 57175104 57175104 G A ZNF835 Missense_Mutation p.A488V 0.25 tolerated(0.37) benign(0.332) TCGA-CM-4743-01 19 5757853 5757853 G T CATSPERD Splice_Site p.X427_splice 0.28 TCGA-CM-4743-01 19 57742446 57742446 C T AURKC 5'UTR 0.34 TCGA-CM-4743-01 19 57840074 57840074 G T ZNF543 Missense_Mutation p.R415L 0.20 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 19 579603 579603 G - BSG Frame_Shift_Del p.G175Afs*4 0.19 TCGA-CM-4743-01 19 58038857 58038857 G A ZNF549 5'UTR 0.23 TCGA-CM-4743-01 19 58846315 58846315 C T ZSCAN22 Silent p.R49R 0.25 TCGA-CM-4743-01 19 58879903 58879903 G - ZNF837 Frame_Shift_Del p.P266Rfs*141 0.30 TCGA-CM-4743-01 19 58929111 58929111 G A ZNF584 Missense_Mutation p.R409H 0.19 deleterious(0) benign(0.001) TCGA-CM-4743-01 19 58966469 58966469 C - ZNF324B Intron 0.22 TCGA-CM-4743-01 19 5915321 5915321 C A CAPS Silent p.A186A 0.26 TCGA-CM-4743-01 19 6466890 6466890 C - CRB3 Intron 0.19 TCGA-CM-4743-01 19 7504895 7504895 C T ARHGEF18 Silent p.D23D 0.21 TCGA-CM-4743-01 19 7529472 7529472 A C ARHGEF18 Missense_Mutation p.S746R 0.21 tolerated(0.16) possibly_damaging(0.536) TCGA-CM-4743-01 19 7912694 7912694 A G EVI5L Missense_Mutation p.S72G 0.23 tolerated(0.1) benign(0.116) TCGA-CM-4743-01 19 7920936 7920936 G A EVI5L Silent p.R394R 0.24 TCGA-CM-4743-01 19 7975950 7975950 G A MAP2K7 Missense_Mutation p.R254Q 0.20 tolerated(0.14) benign(0.072) TCGA-CM-4743-01 19 8002969 8002969 A G TIMM44 Silent p.R85R 0.19 TCGA-CM-4743-01 19 8046014 8046014 C A ELAVL1 Missense_Mutation p.A77S 0.17 deleterious(0) possibly_damaging(0.765) TCGA-CM-4743-01 19 8553562 8553562 C A HNRNPM Intron 0.26 TCGA-CM-4743-01 19 8619398 8619398 T C MYO1F Missense_Mutation p.M97V 0.13 deleterious(0.02) probably_damaging(0.919) TCGA-CM-4743-01 19 8619403 8619403 C T MYO1F Missense_Mutation p.R95Q 0.21 deleterious(0.02) probably_damaging(0.978) TCGA-CM-4743-01 19 9009335 9009335 C T MUC16 Splice_Site p.X13047_splice 0.19 TCGA-CM-4743-01 19 9085734 9085734 G T MUC16 Silent p.S2027S 0.21 TCGA-CM-4743-01 19 9362157 9362157 C - OR7E24 Frame_Shift_Del p.L148Cfs*7 0.21 TCGA-CM-4743-01 19 9800853 9800853 C A ZNF812 Missense_Mutation p.E442D 0.14 deleterious(0.03) possibly_damaging(0.469) TCGA-CM-4743-01 1 100573523 100573523 C T SASS6 Missense_Mutation p.R300Q 0.24 deleterious(0.03) benign(0.241) TCGA-CM-4743-01 1 101200200 101200200 A G VCAM1 Silent p.V645V 0.21 TCGA-CM-4743-01 1 10338110 10338110 G T KIF1B Silent p.L362L 0.17 TCGA-CM-4743-01 1 10428582 10428582 G A KIF1B Missense_Mutation p.V1558I 0.22 tolerated(0.46) benign(0) TCGA-CM-4743-01 1 10510304 10510304 G C CORT Silent p.L8L 0.21 TCGA-CM-4743-01 1 10703233 10703233 C T CASZ1 Missense_Mutation p.R1335H 0.10 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CM-4743-01 1 107600417 107600417 A C PRMT6 Missense_Mutation p.K360N 0.17 tolerated(0.24) benign(0.024) TCGA-CM-4743-01 1 109814086 109814086 C T CELSR2 Silent p.S2585S 0.24 TCGA-CM-4743-01 1 11007947 11007947 C - C1orf127 Frame_Shift_Del p.V749Lfs*13 0.21 TCGA-CM-4743-01 1 110883525 110883525 C A RBM15 Missense_Mutation p.L500M 0.27 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 1 11252389 11252389 C A ANGPTL7 Missense_Mutation p.L147I 0.17 tolerated(0.55) probably_damaging(0.93) TCGA-CM-4743-01 1 11316086 11316086 C T MTOR Missense_Mutation p.R223H 0.07 deleterious(0) probably_damaging(0.996) TCGA-CM-4743-01 1 113242344 113242344 G A MOV10 Missense_Mutation p.S874N 0.06 deleterious(0.04) benign(0.205) TCGA-CM-4743-01 1 114437900 114437900 G A AP4B1 Silent p.I669I 0.25 TCGA-CM-4743-01 1 115143527 115143527 A G DENND2C Missense_Mutation p.F624L 0.15 tolerated(0.28) probably_damaging(0.999) TCGA-CM-4743-01 1 115164587 115164587 C T DENND2C Missense_Mutation p.V386I 0.24 tolerated(0.2) benign(0.037) TCGA-CM-4743-01 1 115829081 115829081 G - NGF Frame_Shift_Del p.F113Sfs*45 0.21 TCGA-CM-4743-01 1 117655999 117655999 A G TRIM45 Missense_Mutation p.C526R 0.23 deleterious(0) probably_damaging(0.996) TCGA-CM-4743-01 1 11863568 11863568 C T MTHFR 5'Flank 0.21 TCGA-CM-4743-01 1 1269459 1269459 G A TAS1R3 Missense_Mutation p.R725H 0.19 tolerated(0.52) benign(0.016) TCGA-CM-4743-01 1 14106538 14106538 C A PRDM2 Missense_Mutation p.L750I 0.26 possibly_damaging(0.829) TCGA-CM-4743-01 1 1422047 1422047 G A ATAD3B Missense_Mutation p.G405S 0.16 deleterious(0.03) probably_damaging(0.939) TCGA-CM-4743-01 1 149783909 149783911 AAG - HIST2H2BF 5'UTR 0.22 TCGA-CM-4743-01 1 149902711 149902711 G - MTMR11 Frame_Shift_Del p.W480Gfs*10 0.19 TCGA-CM-4743-01 1 150445244 150445244 C - RPRD2 Frame_Shift_Del p.P1275Lfs*138 0.13 TCGA-CM-4743-01 1 150531057 150531057 C A ADAMTSL4 Missense_Mutation p.P831T 0.22 tolerated(0.05) possibly_damaging(0.864) TCGA-CM-4743-01 1 150974897 150974897 A G FAM63A Missense_Mutation p.L114P 0.21 deleterious_low_confidence(0.05) benign(0.048) TCGA-CM-4743-01 1 151021191 151021191 C A C1orf56 Missense_Mutation p.P290T 0.26 deleterious(0.04) benign(0.046) TCGA-CM-4743-01 1 151786067 151786067 G T RORC Silent p.A321A 0.18 TCGA-CM-4743-01 1 152552070 152552070 T - LCE3D 3'UTR 0.22 TCGA-CM-4743-01 1 153633697 153633698 CA - SNAPIN Frame_Shift_Del p.H111Qfs*52 0.21 TCGA-CM-4743-01 1 153655938 153655938 T C NPR1 Silent p.P450P 0.25 TCGA-CM-4743-01 1 154245102 154245102 G A HAX1 5'UTR 0.19 TCGA-CM-4743-01 1 154987614 154987614 C T ZBTB7B Missense_Mutation p.R194C 0.23 deleterious(0) probably_damaging(0.942) TCGA-CM-4743-01 1 155264349 155264349 C T PKLR Missense_Mutation p.V297I 0.16 tolerated(1) benign(0.021) TCGA-CM-4743-01 1 155448063 155448063 T - ASH1L Frame_Shift_Del p.K1533Sfs*17 0.19 TCGA-CM-4743-01 1 155921023 155921023 A G ARHGEF2 Missense_Mutation p.F767S 0.22 tolerated(0.33) benign(0.013) TCGA-CM-4743-01 1 156039472 156039472 A T RAB25 Silent p.G148G 0.18 TCGA-CM-4743-01 1 156255498 156255498 C - TMEM79 Frame_Shift_Del p.R163Gfs*17 0.16 TCGA-CM-4743-01 1 156816385 156816385 G A INSRR Missense_Mutation p.T579M 0.19 deleterious(0.02) benign(0.177) TCGA-CM-4743-01 1 157737109 157737109 C T FCRL2 Silent p.L358L 0.22 TCGA-CM-4743-01 1 159923156 159923156 C T SLAMF9 Missense_Mutation p.V112I 0.21 tolerated(0.39) benign(0.429) TCGA-CM-4743-01 1 161135304 161135304 T C USP21 3'UTR 0.29 TCGA-CM-4743-01 1 161167804 161167804 G A ADAMTS4 Missense_Mutation p.P205L 0.21 tolerated(0.07) benign(0.05) TCGA-CM-4743-01 1 161334846 161334846 G - C1orf192 Frame_Shift_Del p.P148Qfs*77 0.19 TCGA-CM-4743-01 1 16255265 16255265 C T SPEN Nonsense_Mutation p.R844* 0.24 TCGA-CM-4743-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.30 TCGA-CM-4743-01 1 164769039 164769039 A G PBX1 Missense_Mutation p.H205R 0.15 tolerated(0.14) probably_damaging(1) TCGA-CM-4743-01 1 171123340 171123340 A - FMO6P Frame_Shift_Del p.K416Nfs*17 0.11 TCGA-CM-4743-01 1 173019984 173019984 C T TNFSF18 Missense_Mutation p.G40E 0.17 tolerated(0.33) benign(0.109) TCGA-CM-4743-01 1 173638996 173638996 C T ANKRD45 5'UTR 0.23 TCGA-CM-4743-01 1 174959081 174959081 G A RABGAP1L Silent p.T340T 0.26 TCGA-CM-4743-01 1 177250139 177250139 C A BRINP2 Missense_Mutation p.S609R 0.25 deleterious(0.02) benign(0.006) TCGA-CM-4743-01 1 179869298 179869298 A C TOR1AIP1 Missense_Mutation p.E216D 0.21 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-CM-4743-01 1 182523825 182523826 - G RGSL1 Frame_Shift_Ins 0.16 TCGA-CM-4743-01 1 183617137 183617137 G A APOBEC4 Silent p.S260S 0.18 TCGA-CM-4743-01 1 186055419 186055419 G A HMCN1 Missense_Mutation p.V2976I 0.19 probably_damaging(0.987) TCGA-CM-4743-01 1 18691980 18691980 G A IGSF21 Silent p.T268T 0.23 TCGA-CM-4743-01 1 19027261 19027261 C - PAX7 Frame_Shift_Del p.Y303Tfs*64 0.21 TCGA-CM-4743-01 1 192335288 192335288 G T RGS21 3'UTR 0.17 TCGA-CM-4743-01 1 19413238 19413238 C T UBR4 Silent p.Q4874Q 0.22 TCGA-CM-4743-01 1 19464666 19464666 C T UBR4 Missense_Mutation p.R2914Q 0.23 probably_damaging(0.973) TCGA-CM-4743-01 1 19465584 19465584 C A UBR4 Missense_Mutation p.E2908D 0.25 probably_damaging(0.937) TCGA-CM-4743-01 1 19653075 19653075 C T PQLC2 Silent p.S192S 0.23 TCGA-CM-4743-01 1 197704841 197704841 A G DENND1B Intron 0.17 TCGA-CM-4743-01 1 200843239 200843239 G T GPR25 Silent p.S358S 0.35 TCGA-CM-4743-01 1 203044857 203044857 G A PPFIA4 Silent p.P676P 0.32 TCGA-CM-4743-01 1 204375255 204375255 A G PPP1R15B Missense_Mutation p.C703R 0.20 deleterious(0.01) possibly_damaging(0.569) TCGA-CM-4743-01 1 204971735 204971735 A - NFASC Frame_Shift_Del p.T1052Lfs*13 0.19 TCGA-CM-4743-01 1 205027366 205027366 G - CNTN2 Frame_Shift_Del p.G93Afs*6 0.19 TCGA-CM-4743-01 1 205768141 205768141 G A SLC41A1 Missense_Mutation p.A214V 0.25 tolerated(0.08) probably_damaging(0.933) TCGA-CM-4743-01 1 206566162 206566162 G A SRGAP2 Silent p.R115R 0.06 TCGA-CM-4743-01 1 207085298 207085298 C T FAIM3 Splice_Site p.X163_splice 0.19 TCGA-CM-4743-01 1 210406996 210406996 G T SERTAD4 Intron 0.27 TCGA-CM-4743-01 1 21071273 21071274 - T HP1BP3 3'UTR 0.21 TCGA-CM-4743-01 1 211192410 211192410 G T KCNH1 Silent p.A249A 0.25 TCGA-CM-4743-01 1 212534172 212534173 - A PPP2R5A 3'UTR 0.18 TCGA-CM-4743-01 1 214170675 214170675 C T PROX1 Missense_Mutation p.S266L 0.15 tolerated(0.36) benign(0.411) TCGA-CM-4743-01 1 215808008 215808008 C A USH2A Silent p.S5030S 0.20 TCGA-CM-4743-01 1 220253189 220253189 G T BPNT1 5'UTR 0.17 TCGA-CM-4743-01 1 220369603 220369605 AGA - RAB3GAP2 In_Frame_Del p.F316del 0.25 TCGA-CM-4743-01 1 220375647 220375647 A T RAB3GAP2 Missense_Mutation p.I261N 0.24 deleterious(0.03) benign(0.124) TCGA-CM-4743-01 1 220835214 220835214 T A MARK1 Silent p.R698R 0.20 TCGA-CM-4743-01 1 222695984 222695984 G A HHIPL2 Missense_Mutation p.P712S 0.25 tolerated_low_confidence(0.14) benign(0.006) TCGA-CM-4743-01 1 225590900 225590900 A G LBR 3'UTR 0.26 TCGA-CM-4743-01 1 227921685 227921685 G A JMJD4 Silent p.S205S 0.28 TCGA-CM-4743-01 1 228284857 228284858 - A ARF1 Frame_Shift_Ins p.E17Rfs*22 0.20 TCGA-CM-4743-01 1 228492130 228492130 G A OBSCN Missense_Mutation p.R4710Q 0.22 possibly_damaging(0.862) TCGA-CM-4743-01 1 230461134 230461135 - C PGBD5 Frame_Shift_Ins p.E365Gfs*23 0.22 TCGA-CM-4743-01 1 235506540 235506540 C T GGPS1 3'UTR 0.33 TCGA-CM-4743-01 1 236208766 236208766 T C NID1 Missense_Mutation p.N248S 0.22 deleterious(0.04) benign(0.217) TCGA-CM-4743-01 1 2445867 2445868 CA - PANK4 Frame_Shift_Del p.V471Gfs*108 0.28 TCGA-CM-4743-01 1 245849479 245849479 C - KIF26B Frame_Shift_Del p.R1067Gfs*65 0.24 TCGA-CM-4743-01 1 245927426 245927426 C T SMYD3 Missense_Mutation p.V368I 0.26 tolerated(0.23) benign(0.002) TCGA-CM-4743-01 1 25669482 25669482 G A TMEM50A Missense_Mutation p.A42T 0.20 tolerated(0.22) possibly_damaging(0.824) TCGA-CM-4743-01 1 26136187 26136187 T C SEPN1 Missense_Mutation p.F296L 0.20 deleterious(0) benign(0.345) TCGA-CM-4743-01 1 27276473 27276473 C A C1orf172 3'UTR 0.18 TCGA-CM-4743-01 1 27434209 27434209 G A SLC9A1 Silent p.A404A 0.18 TCGA-CM-4743-01 1 27877819 27877819 C T AHDC1 Missense_Mutation p.E270K 0.20 tolerated_low_confidence(0.05) possibly_damaging(0.502) TCGA-CM-4743-01 1 27878432 27878432 T C AHDC1 Silent p.P65P 0.15 TCGA-CM-4743-01 1 29359722 29359722 C T EPB41 Missense_Mutation p.R444C 0.06 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 1 32677684 32677684 G A DCDC2B Missense_Mutation p.G137R 0.26 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 1 3321424 3321424 C T PRDM16 Missense_Mutation p.R336C 0.24 deleterious(0) possibly_damaging(0.556) TCGA-CM-4743-01 1 3328293 3328293 C - PRDM16 Frame_Shift_Del p.G513Afs*27 0.23 TCGA-CM-4743-01 1 34401428 34401428 G T CSMD2 Silent p.A175A 0.20 TCGA-CM-4743-01 1 35320955 35320955 G A SMIM12 3'UTR 0.14 TCGA-CM-4743-01 1 35649910 35649910 G A SFPQ 3'UTR 0.18 TCGA-CM-4743-01 1 3646622 3646622 G - TP73 Frame_Shift_Del p.G420Afs*2 0.24 TCGA-CM-4743-01 1 3662731 3662731 C T TP73-AS1 RNA 0.34 TCGA-CM-4743-01 1 36752313 36752313 G A THRAP3 Missense_Mutation p.R161H 0.17 tolerated(0.07) unknown(0) TCGA-CM-4743-01 1 36932352 36932352 G A CSF3R Missense_Mutation p.P733L 0.21 tolerated(0.19) benign(0.028) TCGA-CM-4743-01 1 37947226 37947228 AGA - ZC3H12A In_Frame_Del p.K206del 0.21 TCGA-CM-4743-01 1 38022627 38022629 ACG - DNALI1 In_Frame_Del p.D34del 0.18 TCGA-CM-4743-01 1 39321456 39321456 T - RRAGC Frame_Shift_Del p.I189* 0.17 TCGA-CM-4743-01 1 39880210 39880210 A T KIAA0754 Missense_Mutation p.T1289S 0.25 unknown(0) TCGA-CM-4743-01 1 40536613 40536613 G A CAP1 Missense_Mutation p.E436K 0.16 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 1 40702623 40702623 A G RLF Missense_Mutation p.Y750C 0.20 deleterious(0.05) probably_damaging(0.922) TCGA-CM-4743-01 1 40703131 40703131 T C RLF Silent p.S919S 0.08 TCGA-CM-4743-01 1 41483489 41483489 G A SLFNL1 Missense_Mutation p.L259F 0.24 tolerated(1) benign(0.013) TCGA-CM-4743-01 1 41976660 41976660 C - HIVEP3 Frame_Shift_Del p.G2228Vfs*5 0.21 TCGA-CM-4743-01 1 43316820 43316820 G T ZNF691 Missense_Mutation p.R95L 0.24 tolerated(0.26) benign(0.001) TCGA-CM-4743-01 1 43638024 43638024 G T EBNA1BP2 Silent p.S23S 0.22 TCGA-CM-4743-01 1 43829589 43829589 A G ELOVL1 Nonstop_Mutation p.*280Rext*6 0.30 TCGA-CM-4743-01 1 45250840 45250840 C T BEST4 Silent p.P284P 0.23 TCGA-CM-4743-01 1 45292040 45292040 A G PTCH2 Missense_Mutation p.M999T 0.22 deleterious(0.01) benign(0.018) TCGA-CM-4743-01 1 46124754 46124754 C T GPBP1L1 Silent p.A2A 0.13 TCGA-CM-4743-01 1 46976854 46976854 G A DMBX1 Missense_Mutation p.R194H 0.23 deleterious(0.01) benign(0.01) TCGA-CM-4743-01 1 47016877 47016877 G A KNCN Missense_Mutation p.P4L 0.24 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-CM-4743-01 1 52248308 52248308 T C OSBPL9 Silent p.H512H 0.27 TCGA-CM-4743-01 1 54606841 54606841 G A CDCP2 Silent p.H231H 0.23 TCGA-CM-4743-01 1 57333335 57333336 - GTCAGA C8A In_Frame_Ins p.S45_E46dup 0.12 TCGA-CM-4743-01 1 59787256 59787256 A G FGGY Missense_Mutation p.Y12C 0.21 deleterious(0) probably_damaging(0.996) TCGA-CM-4743-01 1 6285180 6285180 G A ICMT Missense_Mutation p.T272M 0.26 deleterious(0) benign(0.389) TCGA-CM-4743-01 1 64117370 64117370 C T PGM1 Silent p.G455G 0.22 TCGA-CM-4743-01 1 67099765 67099765 G - SGIP1 Intron 0.16 TCGA-CM-4743-01 1 68910291 68910291 C A RPE65 Missense_Mutation p.G140W 0.23 deleterious(0.01) probably_damaging(1) TCGA-CM-4743-01 1 75038355 75038355 A G C1orf173 Silent p.P1013P 0.23 TCGA-CM-4743-01 1 78481820 78481820 A - DNAJB4 Frame_Shift_Del p.N303Ifs*9 0.15 TCGA-CM-4743-01 1 7993329 7993331 AAG - TNFRSF9 In_Frame_Del p.F191del 0.18 TCGA-CM-4743-01 1 84668407 84668407 A G PRKACB Silent p.L275L 0.20 TCGA-CM-4743-01 1 84874067 84874067 G T DNASE2B Intron 0.22 TCGA-CM-4743-01 1 85018868 85018868 T C CTBS 3'UTR 0.35 TCGA-CM-4743-01 1 85733513 85733513 A - BCL10 Frame_Shift_Del p.S167Lfs*6 0.20 TCGA-CM-4743-01 1 89728082 89728082 C G GBP5 Missense_Mutation p.A490P 0.19 deleterious(0) possibly_damaging(0.799) TCGA-CM-4743-01 1 914393 914393 C T C1orf170 Missense_Mutation p.V579M 0.21 tolerated(0.38) possibly_damaging(0.752) TCGA-CM-4743-01 1 92712010 92712010 A T GLMN 3'UTR 0.21 TCGA-CM-4743-01 1 92941736 92941736 G A GFI1 Silent p.C373C 0.16 TCGA-CM-4743-01 1 94512530 94512530 C T ABCA4 Missense_Mutation p.E955K 0.24 deleterious(0.03) probably_damaging(0.988) TCGA-CM-4743-01 1 976912 976912 G A AGRN Missense_Mutation p.R336H 0.31 deleterious(0.04) possibly_damaging(0.812) TCGA-CM-4743-01 1 979255 979256 GT - AGRN Frame_Shift_Del p.C620Sfs*4 0.14 TCGA-CM-4743-01 1 98293714 98293714 C A DPYD Missense_Mutation p.K63N 0.14 deleterious(0.04) probably_damaging(1) TCGA-CM-4743-01 20 13752016 13752016 C T ESF1 Missense_Mutation p.G455D 0.17 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 20 14306419 14306419 A G FLRT3 Silent p.A578A 0.21 TCGA-CM-4743-01 20 17640269 17640270 - C RRBP1 Intron 0.18 TCGA-CM-4743-01 20 17640297 17640297 G T RRBP1 Intron 0.19 TCGA-CM-4743-01 20 17949038 17949038 G C SNX5 Missense_Mutation p.Q11E 0.20 tolerated_low_confidence(1) benign(0) TCGA-CM-4743-01 20 18454091 18454091 C A POLR3F Missense_Mutation p.A102E 0.14 deleterious(0) probably_damaging(0.978) TCGA-CM-4743-01 20 1918138 1918138 G A SIRPA Missense_Mutation p.R480Q 0.20 tolerated(0.14) possibly_damaging(0.885) TCGA-CM-4743-01 20 19701698 19701698 C A SLC24A3 Missense_Mutation p.L617M 0.21 tolerated(0.05) possibly_damaging(0.718) TCGA-CM-4743-01 20 19956394 19956394 C - RIN2 Frame_Shift_Del p.I627Sfs*4 0.22 TCGA-CM-4743-01 20 21143060 21143060 G A RP4-777D9.2 Intron 0.19 TCGA-CM-4743-01 20 21687289 21687289 G A PAX1 Missense_Mutation p.G167E 0.25 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 20 23030014 23030014 G A THBD Missense_Mutation p.A43V 0.43 tolerated(0.18) benign(0.007) TCGA-CM-4743-01 20 24949531 24949531 A - APMAP Frame_Shift_Del p.F346Lfs*9 0.13 TCGA-CM-4743-01 20 25456982 25456982 C T NINL Missense_Mutation p.R982Q 0.22 tolerated(0.61) benign(0.001) TCGA-CM-4743-01 20 2819363 2819363 C T PCED1A Missense_Mutation p.R158Q 0.20 tolerated(0.18) benign(0.126) TCGA-CM-4743-01 20 30436211 30436211 C T FOXS1 5'Flank 0.25 TCGA-CM-4743-01 20 30584609 30584609 C T XKR7 Silent p.V363V 0.25 TCGA-CM-4743-01 20 30789952 30789952 G - PLAGL2 Frame_Shift_Del p.W11Gfs*15 0.22 TCGA-CM-4743-01 20 31571673 31571673 C T SUN5 Missense_Mutation p.R356H 0.24 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 20 33298282 33298282 T C TP53INP2 3'UTR 0.25 TCGA-CM-4743-01 20 34021657 34021657 G T GDF5 3'UTR 0.24 TCGA-CM-4743-01 20 35812735 35812735 G A RPN2 Missense_Mutation p.V56M 0.21 deleterious(0.04) probably_damaging(0.91) TCGA-CM-4743-01 20 3678774 3678774 G - SIGLEC1 Frame_Shift_Del p.P598Lfs*66 0.21 TCGA-CM-4743-01 20 37384640 37384640 G A ACTR5 Silent p.A378A 0.19 TCGA-CM-4743-01 20 39979029 39979029 G - LPIN3 Frame_Shift_Del p.G368Afs*52 0.21 TCGA-CM-4743-01 20 43726973 43726973 G A KCNS1 Missense_Mutation p.A147V 0.43 tolerated(0.08) benign(0.352) TCGA-CM-4743-01 20 43927139 43927139 C T MATN4 Missense_Mutation p.R366H 0.29 possibly_damaging(0.855) TCGA-CM-4743-01 20 44578188 44578188 T C ZNF335 Missense_Mutation p.Q1230R 0.20 deleterious(0.01) possibly_damaging(0.723) TCGA-CM-4743-01 20 44598228 44598228 C T ZNF335 Missense_Mutation p.G102S 0.29 tolerated(1) benign(0.01) TCGA-CM-4743-01 20 47734401 47734401 A G STAU1 Silent p.N474N 0.34 TCGA-CM-4743-01 20 50407750 50407750 G A SALL4 Silent p.N424N 0.15 TCGA-CM-4743-01 20 54824345 54824345 C T MC3R Missense_Mutation p.A149V 0.17 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 20 55066831 55066831 C T GCNT7 Missense_Mutation p.V237I 0.11 tolerated(0.21) benign(0.042) TCGA-CM-4743-01 20 5943936 5943936 G A MCM8 Missense_Mutation p.C269Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 20 60894849 60894849 G T LAMA5 Silent p.A2254A 0.29 TCGA-CM-4743-01 20 61443947 61443947 G A OGFR Missense_Mutation p.G327D 0.26 tolerated(0.14) benign(0.275) TCGA-CM-4743-01 20 61527946 61527946 G A DIDO1 Missense_Mutation p.S664L 0.18 possibly_damaging(0.755) TCGA-CM-4743-01 20 61917432 61917432 C T ARFGAP1 Intron 0.18 TCGA-CM-4743-01 20 61978150 61978150 G A CHRNA4 Silent p.I608I 0.18 TCGA-CM-4743-01 20 61981546 61981546 G A CHRNA4 Missense_Mutation p.P406L 0.21 tolerated(0.27) benign(0.018) TCGA-CM-4743-01 20 62076642 62076642 G T KCNQ2 Missense_Mutation p.R155S 0.21 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 20 62168691 62168691 C A PTK6 5'UTR 0.25 TCGA-CM-4743-01 20 62593955 62593955 C A ZNF512B Silent p.V716V 0.16 TCGA-CM-4743-01 20 62594091 62594091 G A ZNF512B Missense_Mutation p.P671L 0.27 tolerated(0.38) benign(0) TCGA-CM-4743-01 21 10971304 10971304 C A TPTE Missense_Mutation p.G18V 0.10 tolerated_low_confidence(0.63) benign(0.003) TCGA-CM-4743-01 21 30302761 30302761 A - LTN1 3'UTR 0.14 TCGA-CM-4743-01 21 32638495 32638495 G A TIAM1 Missense_Mutation p.P265L 0.24 deleterious(0.04) benign(0.045) TCGA-CM-4743-01 21 34157149 34157149 T - C21orf49 5'UTR 0.18 TCGA-CM-4743-01 21 37603376 37603376 T C DOPEY2 Missense_Mutation p.V765A 0.21 deleterious(0) benign(0.405) TCGA-CM-4743-01 21 40763717 40763717 A G WRB Silent p.L97L 0.22 TCGA-CM-4743-01 21 45139178 45139178 G A PDXK Translation_Start_Site p.M1? 0.18 deleterious(0.02) benign(0.116) TCGA-CM-4743-01 21 45680702 45680702 T C DNMT3L Missense_Mutation p.K43E 0.17 tolerated(0.56) benign(0.098) TCGA-CM-4743-01 21 47959901 47959901 G A DIP2A Missense_Mutation p.R678H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 22 17601076 17601076 G T CECR6 Silent p.A314A 0.36 TCGA-CM-4743-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.23 TCGA-CM-4743-01 22 20130772 20130772 G A ZDHHC8 Missense_Mutation p.R540H 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-CM-4743-01 22 20383873 20383873 T C AC023490.1 3'Flank 0.25 TCGA-CM-4743-01 22 20761006 20761007 - G ZNF74 Frame_Shift_Ins p.E563Gfs*11 0.17 TCGA-CM-4743-01 22 21403124 21403124 C T AC002472.13 Intron 0.22 TCGA-CM-4743-01 22 21989509 21989509 C - CCDC116 Frame_Shift_Del p.S388Pfs*52 0.17 TCGA-CM-4743-01 22 21998366 21998366 G A SDF2L1 Missense_Mutation p.G190S 0.25 deleterious(0.03) probably_damaging(1) TCGA-CM-4743-01 22 23264845 23264845 G A IGLC7 Silent p.V27V 0.23 TCGA-CM-4743-01 22 24567760 24567760 C T CABIN1 Missense_Mutation p.T1946I 0.20 tolerated_low_confidence(0.19) benign(0.002) TCGA-CM-4743-01 22 24581885 24581885 C - SUSD2 Frame_Shift_Del p.P444Qfs*13 0.18 TCGA-CM-4743-01 22 24622224 24622224 C T GGT5 Missense_Mutation p.R350Q 0.20 tolerated(1) benign(0.004) TCGA-CM-4743-01 22 24717514 24717514 T G SPECC1L Missense_Mutation p.L189R 0.11 deleterious(0) possibly_damaging(0.779) TCGA-CM-4743-01 22 24836970 24836970 T C ADORA2A Missense_Mutation p.I251T 0.22 tolerated(0.07) benign(0.143) TCGA-CM-4743-01 22 26343688 26343688 A G MYO18B Missense_Mutation p.Q1881R 0.18 tolerated(0.11) possibly_damaging(0.662) TCGA-CM-4743-01 22 28193411 28193411 C T MN1 Missense_Mutation p.V1041M 0.15 benign(0.446) TCGA-CM-4743-01 22 28394424 28394424 G T TTC28 Intron 0.28 TCGA-CM-4743-01 22 30415772 30415772 C T MTMR3 Silent p.H708H 0.20 TCGA-CM-4743-01 22 30682032 30682032 G A GATSL3 Missense_Mutation p.R267C 0.31 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 22 30766396 30766396 A G CCDC157 Missense_Mutation p.T168A 0.23 tolerated(1) benign(0) TCGA-CM-4743-01 22 30977520 30977520 G T PES1 Missense_Mutation p.P248T 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-CM-4743-01 22 31032939 31032939 G T SLC35E4 Missense_Mutation p.G168C 0.25 tolerated(0.09) probably_damaging(0.991) TCGA-CM-4743-01 22 31032960 31032960 G A SLC35E4 Missense_Mutation p.A175T 0.19 tolerated(0.06) probably_damaging(0.963) TCGA-CM-4743-01 22 31301946 31301946 G A OSBP2 Missense_Mutation p.R833H 0.29 tolerated(0.26) benign(0.009) TCGA-CM-4743-01 22 32616995 32616995 G A SLC5A4 Silent p.C560C 0.18 TCGA-CM-4743-01 22 33670228 33670228 C T LARGE 3'UTR 0.43 TCGA-CM-4743-01 22 36013378 36013378 A C MB 5'UTR 0.28 TCGA-CM-4743-01 22 36690178 36690178 C T MYH9 Missense_Mutation p.R1266H 0.21 probably_damaging(0.982) TCGA-CM-4743-01 22 36913410 36913410 G A EIF3D Missense_Mutation p.R310C 0.18 tolerated(0.06) benign(0.12) TCGA-CM-4743-01 22 37524326 37524326 G - IL2RB Frame_Shift_Del p.P489Lfs*43 0.20 TCGA-CM-4743-01 22 37578524 37578524 C T C1QTNF6 Missense_Mutation p.G181S 0.19 deleterious(0.03) probably_damaging(1) TCGA-CM-4743-01 22 37770899 37770899 G A ELFN2 Silent p.L226L 0.26 TCGA-CM-4743-01 22 38151602 38151602 C T TRIOBP Missense_Mutation p.R1875W 0.25 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 22 39262531 39262531 G A CBX6 Missense_Mutation p.R308C 0.22 deleterious_low_confidence(0) benign(0.042) TCGA-CM-4743-01 22 39357599 39357599 C T APOBEC3A Missense_Mutation p.R128C 0.48 deleterious(0.02) benign(0.046) TCGA-CM-4743-01 22 39477057 39477057 C T APOBEC3G Silent p.C97C 0.21 TCGA-CM-4743-01 22 39530496 39530496 G A CBX7 Missense_Mutation p.R170W 0.15 deleterious(0) probably_damaging(0.981) TCGA-CM-4743-01 22 41543934 41543934 C T EP300 Missense_Mutation p.P742L 0.05 unknown(0) TCGA-CM-4743-01 22 42473713 42473713 G A FAM109B Missense_Mutation p.R139H 0.17 tolerated(0.07) benign(0.004) TCGA-CM-4743-01 22 43243528 43243528 A C ARFGAP3 Missense_Mutation p.S60R 0.24 deleterious(0) probably_damaging(0.992) TCGA-CM-4743-01 22 44592277 44592277 G A PARVG Silent p.V231V 0.18 TCGA-CM-4743-01 22 45960940 45960940 G A FBLN1 Intron 0.21 TCGA-CM-4743-01 22 46777929 46777929 G A CELSR1 Missense_Mutation p.P2301L 0.24 deleterious(0.03) benign(0.016) TCGA-CM-4743-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.20 TCGA-CM-4743-01 22 48940613 48940613 G C CTA-299D3.8 Missense_Mutation p.P66A 0.19 possibly_damaging(0.737) TCGA-CM-4743-01 22 49042546 49042546 G A FAM19A5 Missense_Mutation p.A84T 0.27 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 22 50170787 50170787 G A BRD1 Missense_Mutation p.R875W 0.22 deleterious(0) possibly_damaging(0.777) TCGA-CM-4743-01 22 50312896 50312898 AAG - CRELD2 In_Frame_Del p.K51del 0.27 TCGA-CM-4743-01 22 50644927 50644927 C T SELO Missense_Mutation p.R246C 0.20 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 22 50750804 50750804 C T DENND6B Missense_Mutation p.V535M 0.17 deleterious(0) possibly_damaging(0.89) TCGA-CM-4743-01 22 50928059 50928059 G T MIOX Missense_Mutation p.W245C 0.18 deleterious(0.01) possibly_damaging(0.823) TCGA-CM-4743-01 2 102448226 102448226 G A MAP4K4 Silent p.R184R 0.19 TCGA-CM-4743-01 2 102504299 102504299 G A MAP4K4 Silent p.E1132E 0.20 TCGA-CM-4743-01 2 107459716 107459716 C T ST6GAL2 Missense_Mutation p.G240R 0.11 benign(0.253) TCGA-CM-4743-01 2 109382302 109382302 G T RANBP2 Missense_Mutation p.K1769N 0.17 deleterious_low_confidence(0.04) benign(0) TCGA-CM-4743-01 2 109546603 109546604 - G EDAR Frame_Shift_Ins p.C50Vfs*45 0.17 TCGA-CM-4743-01 2 113510014 113510014 T - CKAP2L Frame_Shift_Del p.T478Pfs*15 0.19 TCGA-CM-4743-01 2 128044361 128044361 G T ERCC3 Silent p.S420S 0.22 TCGA-CM-4743-01 2 129026218 129026218 G A HS6ST1 Missense_Mutation p.R252C 0.16 deleterious(0) probably_damaging(0.993) TCGA-CM-4743-01 2 130900162 130900162 G T CCDC74B Intron 0.26 TCGA-CM-4743-01 2 131798905 131798905 G A ARHGEF4 Missense_Mutation p.E403K 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4743-01 2 132919191 132919191 C T ANKRD30BL Missense_Mutation p.D30N 0.16 tolerated(0.48) benign(0.128) TCGA-CM-4743-01 2 135711537 135711537 A G CCNT2 Silent p.S504S 0.17 TCGA-CM-4743-01 2 135985447 135985447 G A ZRANB3 Missense_Mutation p.A698V 0.25 tolerated(0.43) benign(0.002) TCGA-CM-4743-01 2 136409330 136409330 A G R3HDM1 Missense_Mutation p.M551V 0.21 deleterious(0.04) benign(0.265) TCGA-CM-4743-01 2 152127144 152127144 T - NMI 3'UTR 0.17 TCGA-CM-4743-01 2 153616462 153616462 A G ARL6IP6 3'UTR 0.17 TCGA-CM-4743-01 2 154334732 154334732 G A RPRM 3'UTR 0.19 TCGA-CM-4743-01 2 160028666 160028666 G A TANC1 Silent p.P462P 0.23 TCGA-CM-4743-01 2 160176872 160176872 T C BAZ2B Silent p.E2137E 0.20 TCGA-CM-4743-01 2 166166923 166166923 C T SCN2A Missense_Mutation p.A263V 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4743-01 2 166848893 166848893 G T SCN1A Missense_Mutation p.S1631Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 2 170662294 170662294 T C SSB Missense_Mutation p.L97P 0.08 deleterious(0) probably_damaging(0.96) TCGA-CM-4743-01 2 171400490 171400490 A - MYO3B Frame_Shift_Del p.K1243Sfs*25 0.19 TCGA-CM-4743-01 2 172951422 172951422 A C DLX1 Missense_Mutation p.E118D 0.15 tolerated(0.05) benign(0.315) TCGA-CM-4743-01 2 173879268 173879268 C T RAPGEF4 Missense_Mutation p.R579C 0.19 deleterious(0.05) benign(0.027) TCGA-CM-4743-01 2 173891901 173891901 G T RAPGEF4 Missense_Mutation p.Q824H 0.22 deleterious(0) probably_damaging(0.956) TCGA-CM-4743-01 2 175111530 175111530 T - OLA1 Frame_Shift_Del p.K5Rfs*19 0.18 TCGA-CM-4743-01 2 175201953 175201953 G A AC018470.1 Silent p.L67L 0.23 TCGA-CM-4743-01 2 175437116 175437116 T C WIPF1 Silent p.K139K 0.23 TCGA-CM-4743-01 2 177017552 177017552 A G HOXD4 Missense_Mutation p.N217S 0.19 deleterious(0) possibly_damaging(0.684) TCGA-CM-4743-01 2 179410254 179410254 A G TTN Silent p.Y31861Y 0.22 TCGA-CM-4743-01 2 179416762 179416763 - A TTN Frame_Shift_Ins p.L30289Sfs*6 0.18 TCGA-CM-4743-01 2 179436391 179436391 G A TTN Missense_Mutation p.A24823V 0.14 TCGA-CM-4743-01 2 179439004 179439004 C A TTN Missense_Mutation p.G23952V 0.25 TCGA-CM-4743-01 2 179571301 179571301 C A TTN Missense_Mutation p.G9767V 0.22 TCGA-CM-4743-01 2 179587024 179587024 A T TTN Missense_Mutation p.L7497H 0.20 TCGA-CM-4743-01 2 179595671 179595671 C A TTN Missense_Mutation p.K5907N 0.24 TCGA-CM-4743-01 2 179640850 179640850 G A TTN Missense_Mutation p.A1914V 0.20 TCGA-CM-4743-01 2 179721106 179721106 C A CCDC141 Missense_Mutation p.D915Y 0.16 deleterious(0) probably_damaging(0.985) TCGA-CM-4743-01 2 182394351 182394351 G A ITGA4 Silent p.K838K 0.24 TCGA-CM-4743-01 2 183088643 183088643 T C PDE1A Missense_Mutation p.I258V 0.18 tolerated(0.11) benign(0.011) TCGA-CM-4743-01 2 1855416 1855416 C T MYT1L Missense_Mutation p.R922Q 0.24 deleterious(0.01) benign(0.22) TCGA-CM-4743-01 2 189901424 189901424 A G COL5A2 Missense_Mutation p.V1344A 0.24 unknown(0) TCGA-CM-4743-01 2 189915321 189915322 CT - COL5A2 Frame_Shift_Del p.G1005Hfs*23 0.13 TCGA-CM-4743-01 2 190437578 190437578 C T SLC40A1 Nonsense_Mutation p.W127* 0.25 TCGA-CM-4743-01 2 190608103 190608103 C T ANKAR Missense_Mutation p.R1305C 0.17 deleterious(0.02) possibly_damaging(0.855) TCGA-CM-4743-01 2 191873795 191873795 C T STAT1 Missense_Mutation p.R56H 0.19 deleterious(0.01) possibly_damaging(0.871) TCGA-CM-4743-01 2 197028140 197028140 A G STK17B 5'UTR 0.26 TCGA-CM-4743-01 2 198572960 198572960 T C MARS2 3'UTR 0.28 TCGA-CM-4743-01 2 198949239 198949239 A C PLCL1 Missense_Mutation p.N333T 0.08 deleterious(0.02) benign(0.139) TCGA-CM-4743-01 2 201683118 201683118 T C BZW1 Splice_Site p.X305_splice 0.20 TCGA-CM-4743-01 2 202496900 202496900 T C TMEM237 Missense_Mutation p.N143D 0.23 tolerated(0.21) benign(0.046) TCGA-CM-4743-01 2 202626417 202626417 G A ALS2 Silent p.S100S 0.22 TCGA-CM-4743-01 2 204034557 204034557 G T NBEAL1 Missense_Mutation p.A2000S 0.22 tolerated(0.06) benign(0.088) TCGA-CM-4743-01 2 204304493 204304493 C T RAPH1 Silent p.E1140E 0.24 TCGA-CM-4743-01 2 206630258 206630258 C T NRP2 Missense_Mutation p.R790W 0.22 deleterious(0) possibly_damaging(0.81) TCGA-CM-4743-01 2 207988974 207988974 G A KLF7 Missense_Mutation p.A86V 0.20 tolerated(0.29) benign(0.006) TCGA-CM-4743-01 2 210787068 210787068 G A UNC80 Missense_Mutation p.G1809R 0.25 probably_damaging(0.999) TCGA-CM-4743-01 2 211455540 211455540 G A CPS1 Missense_Mutation p.R292H 0.20 deleterious(0.04) probably_damaging(0.977) TCGA-CM-4743-01 2 21233296 21233297 - T APOB Frame_Shift_Ins p.Y2149Vfs*2 0.19 TCGA-CM-4743-01 2 214354784 214354784 T - SPAG16 Frame_Shift_Del p.F348Lfs*8 0.16 TCGA-CM-4743-01 2 218941230 218941230 G A RUFY4 Silent p.L463L 0.21 TCGA-CM-4743-01 2 219501315 219501315 G A PLCD4 3'UTR 0.27 TCGA-CM-4743-01 2 219509122 219509122 G A ZNF142 Missense_Mutation p.S706F 0.26 deleterious(0.01) possibly_damaging(0.485) TCGA-CM-4743-01 2 220012390 220012390 G A NHEJ1 Missense_Mutation p.T173M 0.26 deleterious(0.04) benign(0.049) TCGA-CM-4743-01 2 220104931 220104931 G A GLB1L Silent p.G176G 0.17 TCGA-CM-4743-01 2 224462739 224462739 C T SCG2 Missense_Mutation p.R421H 0.23 tolerated(0.56) benign(0.002) TCGA-CM-4743-01 2 224758989 224758989 C T WDFY1 Missense_Mutation p.G265R 0.25 tolerated(0.38) benign(0.021) TCGA-CM-4743-01 2 227662873 227662873 G A IRS1 Silent p.F194F 0.27 TCGA-CM-4743-01 2 230135732 230135732 G A PID1 Intron 0.21 TCGA-CM-4743-01 2 231742761 231742761 C T ITM2C Missense_Mutation p.R251C 0.28 deleterious(0) probably_damaging(0.993) TCGA-CM-4743-01 2 232458020 232458020 A C C2orf57 Missense_Mutation p.S120R 0.05 deleterious(0.01) possibly_damaging(0.883) TCGA-CM-4743-01 2 234372892 234372892 C A DGKD Missense_Mutation p.P1090Q 0.20 tolerated(0.66) benign(0.034) TCGA-CM-4743-01 2 237076448 237076448 G A GBX2 Missense_Mutation p.P56L 0.35 deleterious(0) benign(0.36) TCGA-CM-4743-01 2 238672669 238672669 C T LRRFIP1 Silent p.N771N 0.21 TCGA-CM-4743-01 2 24033270 24033270 A G ATAD2B Silent p.T790T 0.25 TCGA-CM-4743-01 2 241569845 241569845 G A GPR35 Missense_Mutation p.G190D 0.19 tolerated(0.14) benign(0.09) TCGA-CM-4743-01 2 241991567 241991567 C T SNED1 Silent p.C654C 0.24 TCGA-CM-4743-01 2 242371169 242371169 A G FARP2 Missense_Mutation p.K283E 0.27 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 2 242814197 242814197 G A CXXC11 Missense_Mutation p.A164T 0.28 tolerated(0.25) benign(0) TCGA-CM-4743-01 2 24299087 24299087 C A SF3B14 Missense_Mutation p.A5S 0.21 tolerated(0.41) benign(0.002) TCGA-CM-4743-01 2 25038517 25038518 AG - CENPO Frame_Shift_Del p.E163Dfs*37 0.18 TCGA-CM-4743-01 2 25174270 25174270 C - DNAJC27 Frame_Shift_Del p.A228Pfs*23 0.18 TCGA-CM-4743-01 2 26151803 26151803 C A KIF3C 3'UTR 0.17 TCGA-CM-4743-01 2 26951124 26951124 G A KCNK3 Silent p.A291A 0.17 TCGA-CM-4743-01 2 27303810 27303810 G - EMILIN1 Frame_Shift_Del p.G169Efs*20 0.27 TCGA-CM-4743-01 2 27353122 27353122 C T ABHD1 Missense_Mutation p.R282C 0.23 tolerated(0.08) probably_damaging(0.976) TCGA-CM-4743-01 2 27532641 27532641 T C MPV17 3'UTR 0.16 TCGA-CM-4743-01 2 29274799 29274799 G A FAM179A Missense_Mutation p.R967H 0.16 deleterious(0.02) possibly_damaging(0.879) TCGA-CM-4743-01 2 29294446 29294446 G A C2orf71 Silent p.S894S 0.19 TCGA-CM-4743-01 2 29295480 29295480 C T C2orf71 Missense_Mutation p.E550K 0.21 tolerated(0.06) possibly_damaging(0.46) TCGA-CM-4743-01 2 31483728 31483728 G T EHD3 Silent p.L285L 0.14 TCGA-CM-4743-01 2 31484508 31484508 G A EHD3 Missense_Mutation p.E337K 0.21 tolerated(0.61) benign(0.004) TCGA-CM-4743-01 2 32661226 32661226 C T BIRC6 Missense_Mutation p.T1202M 0.30 benign(0.333) TCGA-CM-4743-01 2 37443331 37443331 T C CEBPZ Missense_Mutation p.M778V 0.19 tolerated(0.07) possibly_damaging(0.54) TCGA-CM-4743-01 2 39187425 39187425 T C ARHGEF33 Missense_Mutation p.V660A 0.10 deleterious(0.05) possibly_damaging(0.496) TCGA-CM-4743-01 2 39944344 39944344 C T TMEM178A Missense_Mutation p.R283W 0.04 deleterious(0) possibly_damaging(0.908) TCGA-CM-4743-01 2 42991089 42991089 C - OXER1 Frame_Shift_Del p.S78Pfs*64 0.23 TCGA-CM-4743-01 2 43927259 43927259 A - PLEKHH2 Frame_Shift_Del p.K389Nfs*23 0.17 TCGA-CM-4743-01 2 46739167 46739167 G A ATP6V1E2 3'UTR 0.16 TCGA-CM-4743-01 2 48602571 48602571 C T FOXN2 Missense_Mutation p.R429W 0.23 tolerated(0.09) benign(0.016) TCGA-CM-4743-01 2 65357074 65357074 A G RAB1A 5'UTR 0.15 TCGA-CM-4743-01 2 71365905 71365905 C T MPHOSPH10 Intron 0.27 TCGA-CM-4743-01 2 73477030 73477030 G A CCT7 Silent p.Q352Q 0.24 TCGA-CM-4743-01 2 73868249 73868249 G A NAT8 Silent p.G169G 0.24 TCGA-CM-4743-01 2 74275222 74275222 C - TET3 Frame_Shift_Del p.P593Lfs*38 0.21 TCGA-CM-4743-01 2 79350292 79350292 A G REG1A Missense_Mutation p.D151G 0.15 deleterious(0.04) probably_damaging(0.987) TCGA-CM-4743-01 2 80529941 80529941 C T LRRTM1 Missense_Mutation p.R335H 0.22 tolerated(0.35) benign(0.002) TCGA-CM-4743-01 2 80808939 80808939 G A CTNNA2 Missense_Mutation p.A668T 0.19 tolerated(0.67) benign(0.146) TCGA-CM-4743-01 2 85770907 85770907 T - MAT2A 3'UTR 0.18 TCGA-CM-4743-01 2 8890414 8890414 G - KIDINS220 Frame_Shift_Del p.P1081Rfs*48 0.17 TCGA-CM-4743-01 2 9531311 9531311 G A ASAP2 Missense_Mutation p.R835H 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-CM-4743-01 2 95715373 95715373 A G MAL Silent p.S103S 0.15 TCGA-CM-4743-01 2 95976207 95976207 G T KCNIP3 Missense_Mutation p.Q40H 0.24 deleterious_low_confidence(0.02) benign(0.001) TCGA-CM-4743-01 2 97216896 97216896 C - ARID5A Frame_Shift_Del p.R213Gfs*55 0.17 TCGA-CM-4743-01 2 98475832 98475832 T C TMEM131 Missense_Mutation p.T140A 0.24 deleterious(0.01) probably_damaging(0.97) TCGA-CM-4743-01 2 99220639 99220639 G A COA5 Missense_Mutation p.R39W 0.18 deleterious(0) possibly_damaging(0.901) TCGA-CM-4743-01 3 101378774 101378774 C T ZBTB11 Silent p.T633T 0.17 TCGA-CM-4743-01 3 10452356 10452356 C T ATP2B2 Missense_Mutation p.A115T 0.23 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 3 111923223 111923223 A - SLC9C1 Frame_Shift_Del p.S672Hfs*9 0.17 TCGA-CM-4743-01 3 113187981 113187981 G A SPICE1 Missense_Mutation p.T239M 0.21 deleterious(0.02) benign(0.112) TCGA-CM-4743-01 3 121489153 121489153 C A IQCB1 3'UTR 0.17 TCGA-CM-4743-01 3 12200212 12200212 G T TIMP4 Missense_Mutation p.H43Q 0.18 tolerated(0.05) benign(0.049) TCGA-CM-4743-01 3 123022950 123022950 G T ADCY5 Silent p.T841T 0.16 TCGA-CM-4743-01 3 124165043 124165043 G A KALRN Missense_Mutation p.V1115M 0.21 deleterious(0) probably_damaging(0.985) TCGA-CM-4743-01 3 124739888 124739888 C T HEG1 Missense_Mutation p.V334M 0.21 tolerated(0.28) benign(0.004) TCGA-CM-4743-01 3 126386018 126386018 G A NUP210P1 RNA 0.38 TCGA-CM-4743-01 3 127399219 127399219 C T ABTB1 Silent p.H446H 0.25 TCGA-CM-4743-01 3 127806611 127806611 C T RUVBL1 Missense_Mutation p.D353N 0.17 deleterious(0) probably_damaging(0.995) TCGA-CM-4743-01 3 12854814 12854814 C T CAND2 Silent p.D311D 0.06 TCGA-CM-4743-01 3 12859325 12859325 T G CAND2 Missense_Mutation p.L965R 0.25 deleterious(0) possibly_damaging(0.895) TCGA-CM-4743-01 3 129020980 129020980 A - HMCES Frame_Shift_Del p.K276Rfs*59 0.24 TCGA-CM-4743-01 3 129034177 129034177 G A H1FX Missense_Mutation p.A190V 0.24 tolerated_low_confidence(0.28) unknown(0) TCGA-CM-4743-01 3 129207206 129207206 C T IFT122 Missense_Mutation p.A704V 0.19 deleterious(0) probably_damaging(0.99) TCGA-CM-4743-01 3 129233291 129233291 G A IFT122 Missense_Mutation p.R1067Q 0.19 deleterious(0.01) probably_damaging(0.919) TCGA-CM-4743-01 3 129286396 129286396 C T PLXND1 Missense_Mutation p.R1342H 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-CM-4743-01 3 130107746 130107746 A - COL6A5 Frame_Shift_Del p.K730Nfs*10 0.14 TCGA-CM-4743-01 3 130282046 130282046 G A COL6A6 Missense_Mutation p.A67T 0.17 deleterious(0) probably_damaging(0.938) TCGA-CM-4743-01 3 130292934 130292934 C T COL6A6 Nonsense_Mutation p.R1038* 0.25 TCGA-CM-4743-01 3 132948124 132948124 A G TMEM108 5'UTR 0.18 TCGA-CM-4743-01 3 139088325 139088325 A T COPB2 Missense_Mutation p.S423T 0.18 tolerated(0.34) benign(0.024) TCGA-CM-4743-01 3 142255033 142255033 G A ATR Nonsense_Mutation p.Q1246* 0.16 TCGA-CM-4743-01 3 142388390 142388390 G A PLS1 Missense_Mutation p.V77M 0.23 tolerated(0.06) probably_damaging(0.995) TCGA-CM-4743-01 3 142681194 142681194 C T PAQR9 Missense_Mutation p.V329I 0.27 tolerated(1) benign(0.003) TCGA-CM-4743-01 3 147113835 147113835 G A ZIC4 Silent p.G214G 0.20 TCGA-CM-4743-01 3 148460234 148460234 C T AGTR1 3'UTR 0.19 TCGA-CM-4743-01 3 149042719 149042719 A G TM4SF18 Missense_Mutation p.Y120H 0.24 tolerated(0.52) probably_damaging(0.938) TCGA-CM-4743-01 3 151161197 151161197 C T IGSF10 Silent p.E1846E 0.15 TCGA-CM-4743-01 3 15498081 15498081 A - COLQ Frame_Shift_Del p.F320Lfs*12 0.10 TCGA-CM-4743-01 3 155393927 155393927 A - PLCH1 5'Flank 0.23 TCGA-CM-4743-01 3 160783285 160783285 C T PPM1L Silent p.N223N 0.20 TCGA-CM-4743-01 3 182553932 182553932 T C ATP11B Splice_Site p.X141_splice 0.22 TCGA-CM-4743-01 3 182759397 182759397 G A MCCC1 Nonsense_Mutation p.R409* 0.26 TCGA-CM-4743-01 3 182987617 182987617 A - B3GNT5 Frame_Shift_Del p.K12Nfs*4 0.15 TCGA-CM-4743-01 3 183905987 183905987 G T ABCF3 Missense_Mutation p.G210W 0.21 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 3 184045394 184045394 C - EIF4G1 Frame_Shift_Del p.P1236Qfs*2 0.15 TCGA-CM-4743-01 3 184102895 184102895 T G CHRD Missense_Mutation p.C563G 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 3 184102955 184102955 A G CHRD Missense_Mutation p.T583A 0.26 tolerated(0.11) benign(0.058) TCGA-CM-4743-01 3 184105223 184105224 - C CHRD Frame_Shift_Ins p.F806Lfs*5 0.19 TCGA-CM-4743-01 3 186917481 186917481 C T RTP1 Missense_Mutation p.R139W 0.20 deleterious(0) possibly_damaging(0.766) TCGA-CM-4743-01 3 187419763 187419763 C T RTP2 Missense_Mutation p.A52T 0.17 tolerated(0.23) probably_damaging(0.989) TCGA-CM-4743-01 3 19190089 19190089 G A KCNH8 5'UTR 0.19 TCGA-CM-4743-01 3 194152555 194152555 A G ATP13A3 Missense_Mutation p.V771A 0.18 deleterious(0.02) possibly_damaging(0.895) TCGA-CM-4743-01 3 194409409 194409409 G - FAM43A 3'UTR 0.18 TCGA-CM-4743-01 3 195510956 195510956 C T MUC4 Missense_Mutation p.V2499I 0.14 possibly_damaging(0.623) TCGA-CM-4743-01 3 195512532 195512532 G A MUC4 Silent p.D1973D 0.08 TCGA-CM-4743-01 3 195517803 195517803 G C MUC4 Missense_Mutation p.H216Q 0.18 unknown(0) TCGA-CM-4743-01 3 19947115 19947115 T C EFHB Missense_Mutation p.Q472R 0.10 tolerated(0.09) benign(0.248) TCGA-CM-4743-01 3 27173456 27173456 A T NEK10 Nonsense_Mutation p.L1056* 0.24 TCGA-CM-4743-01 3 29476407 29476407 G A RBMS3 Splice_Site p.X83_splice 0.22 TCGA-CM-4743-01 3 29938869 29938869 G T RBMS3 Splice_Site p.X264_splice 0.19 TCGA-CM-4743-01 3 30732969 30732969 C T TGFBR2 Missense_Mutation p.R553C 0.24 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 3 3143447 3143447 C T IL5RA Missense_Mutation p.R99Q 0.24 tolerated(0.52) benign(0.037) TCGA-CM-4743-01 3 33134722 33134723 - CCACTG TMPPE In_Frame_Ins p.G322_S323dup 0.08 TCGA-CM-4743-01 3 33453093 33453093 G A UBP1 Missense_Mutation p.R179C 0.21 deleterious(0.04) benign(0.035) TCGA-CM-4743-01 3 33885639 33885639 T C PDCD6IP Silent p.D470D 0.04 TCGA-CM-4743-01 3 35729345 35729345 G A ARPP21 Missense_Mutation p.E126K 0.18 tolerated(0.52) possibly_damaging(0.486) TCGA-CM-4743-01 3 36898875 36898875 C G TRANK1 Missense_Mutation p.A736P 0.23 tolerated(0.29) benign(0.06) TCGA-CM-4743-01 3 38316250 38316250 G A SLC22A13 Splice_Site p.X213_splice 0.26 TCGA-CM-4743-01 3 38592637 38592637 G A SCN5A Silent p.C1742C 0.20 TCGA-CM-4743-01 3 38622738 38622738 C T SCN5A Missense_Mutation p.R971H 0.23 tolerated(0.32) benign(0.004) TCGA-CM-4743-01 3 39111232 39111232 G A WDR48 Silent p.T223T 0.29 TCGA-CM-4743-01 3 42305021 42305021 C T CCK Silent p.Q34Q 0.14 TCGA-CM-4743-01 3 44489101 44489101 T C ZNF445 Missense_Mutation p.K688E 0.19 tolerated(0.06) unknown(0) TCGA-CM-4743-01 3 46009444 46009444 C A FYCO1 Missense_Mutation p.G461V 0.21 tolerated(0.67) benign(0.118) TCGA-CM-4743-01 3 47459938 47459938 G A SCAP Missense_Mutation p.P735L 0.35 deleterious(0) benign(0.429) TCGA-CM-4743-01 3 47632240 47632240 G A SMARCC1 Missense_Mutation p.S1044F 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-CM-4743-01 3 47884617 47884617 G A DHX30 Missense_Mutation p.V271M 0.20 tolerated(0.1) possibly_damaging(0.854) TCGA-CM-4743-01 3 48603082 48603082 G A COL7A1 Silent p.I2809I 0.07 TCGA-CM-4743-01 3 48612669 48612669 G A COL7A1 Missense_Mutation p.R2063W 0.20 unknown(0) TCGA-CM-4743-01 3 48612878 48612878 C G COL7A1 Missense_Mutation p.G2025A 0.16 unknown(0) TCGA-CM-4743-01 3 49052788 49052788 G A WDR6 3'UTR 0.32 TCGA-CM-4743-01 3 49053374 49053374 A G DALRD3 Intron 0.06 TCGA-CM-4743-01 3 49055259 49055259 G A DALRD3 Silent p.L169L 0.16 TCGA-CM-4743-01 3 49456738 49456738 G A AMT Silent p.G217G 0.22 TCGA-CM-4743-01 3 49751345 49751345 G A RNF123 Missense_Mutation p.R947H 0.22 deleterious(0.01) possibly_damaging(0.654) TCGA-CM-4743-01 3 49756635 49756635 G A AMIGO3 Silent p.R88R 0.36 TCGA-CM-4743-01 3 50388763 50388763 C A CYB561D2 5'UTR 0.30 TCGA-CM-4743-01 3 51434686 51434686 G T RBM15B 3'UTR 0.23 TCGA-CM-4743-01 3 51750049 51750049 G A GRM2 Missense_Mutation p.E754K 0.20 deleterious(0.03) benign(0.376) TCGA-CM-4743-01 3 52302296 52302296 G A WDR82 Intron 0.19 TCGA-CM-4743-01 3 52436268 52436268 G A BAP1 3'UTR 0.15 TCGA-CM-4743-01 3 52485422 52485422 G A TNNC1 Missense_Mutation p.R147C 0.21 deleterious(0) benign(0.398) TCGA-CM-4743-01 3 52492681 52492681 G A NISCH Missense_Mutation p.V61I 0.21 tolerated(0.23) benign(0.002) TCGA-CM-4743-01 3 56657683 56657683 C T FAM208A 3'UTR 0.30 TCGA-CM-4743-01 3 58145334 58145334 C T FLNB Silent p.G2345G 0.24 TCGA-CM-4743-01 3 60522592 60522592 C T FHIT Splice_Site p.X35_splice 0.42 TCGA-CM-4743-01 3 62355793 62355794 - G FEZF2 Frame_Shift_Ins p.S449Lfs*7 0.18 TCGA-CM-4743-01 3 87039905 87039905 C T VGLL3 5'UTR 0.21 TCGA-CM-4743-01 3 88041903 88041903 A G HTR1F 3'UTR 0.28 TCGA-CM-4743-01 3 97311534 97311534 C T EPHA6 Missense_Mutation p.P822L 0.23 tolerated_low_confidence(0.14) benign(0) TCGA-CM-4743-01 3 99567291 99567291 G T FILIP1L Missense_Mutation p.P1077T 0.22 tolerated(0.35) benign(0.003) TCGA-CM-4743-01 3 9989611 9989611 G A PRRT3 Missense_Mutation p.R416C 0.14 deleterious(0) probably_damaging(0.994) TCGA-CM-4743-01 4 103189225 103189225 T - SLC39A8 Frame_Shift_Del p.E285Sfs*8 0.12 TCGA-CM-4743-01 4 106640498 106640498 T C GSTCD Silent p.S236S 0.17 TCGA-CM-4743-01 4 1073448 1073449 GA - RNF212 Frame_Shift_Del p.P165Ffs*4 0.17 TCGA-CM-4743-01 4 110223197 110223197 G A COL25A1 5'UTR 0.24 TCGA-CM-4743-01 4 110862127 110862127 C A EGF Silent p.S51S 0.13 TCGA-CM-4743-01 4 110890194 110890194 G T EGF Missense_Mutation p.R548M 0.26 deleterious(0.02) probably_damaging(0.985) TCGA-CM-4743-01 4 120481470 120481471 - T PDE5A Frame_Shift_Ins p.S394Ifs*3 0.11 TCGA-CM-4743-01 4 1206793 1206793 G C CTBP1 Missense_Mutation p.N349K 0.18 deleterious(0.02) possibly_damaging(0.607) TCGA-CM-4743-01 4 121742334 121742334 C T PRDM5 Missense_Mutation p.G156D 0.20 tolerated(0.16) benign(0.004) TCGA-CM-4743-01 4 122737744 122737745 - T CCNA2 3'UTR 0.15 TCGA-CM-4743-01 4 123664339 123664339 G A BBS12 Missense_Mutation p.R431Q 0.25 tolerated(0.1) benign(0.01) TCGA-CM-4743-01 4 123664425 123664425 G A BBS12 Missense_Mutation p.V460M 0.27 tolerated(0.11) possibly_damaging(0.658) TCGA-CM-4743-01 4 135121247 135121247 G A PABPC4L Nonsense_Mutation p.R368* 0.15 TCGA-CM-4743-01 4 140270732 140270732 C T NAA15 Missense_Mutation p.P270S 0.21 tolerated(0.74) possibly_damaging(0.809) TCGA-CM-4743-01 4 146067436 146067436 C T OTUD4 Missense_Mutation p.A404T 0.15 deleterious(0.02) benign(0.436) TCGA-CM-4743-01 4 147561225 147561225 C A POU4F2 Silent p.S165S 0.33 TCGA-CM-4743-01 4 153243974 153243974 G - FBXW7 3'UTR 0.22 TCGA-CM-4743-01 4 153268111 153268111 C A FBXW7 Missense_Mutation p.G233C 0.21 deleterious(0.02) possibly_damaging(0.848) TCGA-CM-4743-01 4 153803973 153803974 TT - ARFIP1 Frame_Shift_Del p.L245Gfs*3 0.13 TCGA-CM-4743-01 4 154702625 154702625 C T SFRP2 Missense_Mutation p.S289N 0.18 tolerated(0.06) probably_damaging(0.954) TCGA-CM-4743-01 4 155219482 155219482 A G DCHS2 Missense_Mutation p.L1540P 0.25 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 4 156839316 156839316 T G TDO2 Missense_Mutation p.M331R 0.18 deleterious(0) benign(0.279) TCGA-CM-4743-01 4 160273991 160273991 C T RAPGEF2 Silent p.I1179I 0.23 TCGA-CM-4743-01 4 164087946 164087946 A G NAF1 5'UTR 0.18 TCGA-CM-4743-01 4 166388846 166388846 G C CPE Missense_Mutation p.E171Q 0.15 tolerated(0.14) possibly_damaging(0.673) TCGA-CM-4743-01 4 169343737 169343737 T C DDX60L Missense_Mutation p.I728V 0.29 tolerated(0.36) benign(0.009) TCGA-CM-4743-01 4 1720313 1720313 C T TMEM129 Silent p.R82R 0.19 TCGA-CM-4743-01 4 183720958 183720958 C T TENM3 Silent p.N2518N 0.19 TCGA-CM-4743-01 4 186288380 186288380 G A LRP2BP Missense_Mutation p.A333V 0.25 tolerated(0.33) benign(0.006) TCGA-CM-4743-01 4 187179259 187179259 C T KLKB1 Missense_Mutation p.R604C 0.24 deleterious(0) probably_damaging(0.956) TCGA-CM-4743-01 4 1957419 1957419 G - WHSC1 Splice_Site p.X841_splice 0.22 TCGA-CM-4743-01 4 1976596 1976596 A G WHSC1 Missense_Mutation p.I1127V 0.28 tolerated(0.24) probably_damaging(0.998) TCGA-CM-4743-01 4 1980559 1980559 C - WHSC1 Frame_Shift_Del p.P1343Qfs*49 0.27 TCGA-CM-4743-01 4 2172426 2172426 G T POLN Missense_Mutation p.P512T 0.17 tolerated(0.42) benign(0.057) TCGA-CM-4743-01 4 27010487 27010487 T C STIM2 Missense_Mutation p.L459P 0.24 deleterious(0) possibly_damaging(0.905) TCGA-CM-4743-01 4 2831767 2831768 - C SH3BP2 Frame_Shift_Ins p.V438Rfs*14 0.21 TCGA-CM-4743-01 4 2965715 2965716 - G GRK4 5'UTR 0.18 TCGA-CM-4743-01 4 36118698 36118698 A G ARAP2 Silent p.C1341C 0.16 TCGA-CM-4743-01 4 39116842 39116842 G - KLHL5 Frame_Shift_Del p.V703Sfs*41 0.16 TCGA-CM-4743-01 4 39274609 39274609 A - WDR19 Frame_Shift_Del p.N1166Mfs*5 0.19 TCGA-CM-4743-01 4 39501602 39501602 A G UGDH 3'UTR 0.26 TCGA-CM-4743-01 4 39875957 39875957 T G PDS5A Silent p.I743I 0.23 TCGA-CM-4743-01 4 41259598 41259598 G A UCHL1 Intron 0.25 TCGA-CM-4743-01 4 42445685 42445685 C A ATP8A1 Missense_Mutation p.S1007I 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-CM-4743-01 4 42895378 42895378 T C GRXCR1 Missense_Mutation p.V32A 0.26 deleterious(0.05) benign(0.42) TCGA-CM-4743-01 4 4393239 4393239 G A NSG1 Missense_Mutation p.R56H 0.23 tolerated(0.07) benign(0.008) TCGA-CM-4743-01 4 44177044 44177044 T - KCTD8 Frame_Shift_Del p.A396Hfs*39 0.20 TCGA-CM-4743-01 4 44683190 44683190 G T GUF1 Missense_Mutation p.Q159H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4743-01 4 46994859 46994859 C T GABRA4 Missense_Mutation p.R64H 0.20 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 4 47939171 47939172 - T CNGA1 Frame_Shift_Ins p.T516Nfs*3 0.19 TCGA-CM-4743-01 4 48069709 48069709 C A TXK Missense_Mutation p.R510L 0.21 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 4 5021068 5021068 G A CYTL1 Silent p.S35S 0.20 TCGA-CM-4743-01 4 515063 515063 G A PIGG Splice_Site p.X444_splice 0.07 TCGA-CM-4743-01 4 52951167 52951167 T C SPATA18 Splice_Site p.X521_splice 0.25 TCGA-CM-4743-01 4 53497229 53497229 A G USP46 Splice_Site p.X39_splice 0.17 TCGA-CM-4743-01 4 56212549 56212549 C T SRD5A3 Missense_Mutation p.R16C 0.17 deleterious(0.03) benign(0.315) TCGA-CM-4743-01 4 57797231 57797231 C T REST Missense_Mutation p.P736L 0.31 deleterious_low_confidence(0) benign(0.001) TCGA-CM-4743-01 4 57856926 57856926 C T POLR2B Silent p.D35D 0.21 TCGA-CM-4743-01 4 5830448 5830448 G A EVC 3'UTR 0.14 TCGA-CM-4743-01 4 6304343 6304343 C T WFS1 3'UTR 0.33 TCGA-CM-4743-01 4 66467782 66467782 C T EPHA5 Missense_Mutation p.G163R 0.20 deleterious(0.01) benign(0.027) TCGA-CM-4743-01 4 679901 679901 G A MFSD7 Missense_Mutation p.T162M 0.21 tolerated(0.09) possibly_damaging(0.576) TCGA-CM-4743-01 4 69978562 69978562 A G UGT2B7 3'UTR 0.36 TCGA-CM-4743-01 4 70620924 70620925 - G SULT1B1 Frame_Shift_Ins p.D6Rfs*27 0.14 TCGA-CM-4743-01 4 74283848 74283848 C T ALB Missense_Mutation p.T491M 0.23 deleterious(0) possibly_damaging(0.889) TCGA-CM-4743-01 4 76522175 76522175 A G CDKL2 Silent p.V422V 0.22 TCGA-CM-4743-01 4 77116873 77116874 - C SCARB2 Frame_Shift_Ins p.P88Afs*18 0.17 TCGA-CM-4743-01 4 7802191 7802191 C T AFAP1 Missense_Mutation p.G415D 0.25 deleterious(0.04) probably_damaging(0.973) TCGA-CM-4743-01 4 83849347 83849347 G A LIN54 Missense_Mutation p.R720W 0.19 deleterious(0) probably_damaging(0.989) TCGA-CM-4743-01 4 843780 843780 C A GAK Missense_Mutation p.G1245V 0.17 deleterious(0) probably_damaging(0.991) TCGA-CM-4743-01 4 88106911 88106911 G A KLHL8 Missense_Mutation p.A86V 0.24 deleterious(0.02) probably_damaging(0.928) TCGA-CM-4743-01 4 91230715 91230715 T - CCSER1 Frame_Shift_Del p.F428Lfs*29 0.13 TCGA-CM-4743-01 4 91389420 91389420 T C CCSER1 Missense_Mutation p.C547R 0.13 deleterious(0) benign(0.004) TCGA-CM-4743-01 4 95496969 95496969 C T PDLIM5 Intron 0.17 TCGA-CM-4743-01 4 9785349 9785349 G C DRD5 3'UTR 0.23 TCGA-CM-4743-01 4 99802094 99802094 C T EIF4E 3'UTR 0.14 TCGA-CM-4743-01 5 108672990 108672990 G A PJA2 Missense_Mutation p.S690F 0.25 deleterious(0.02) unknown(0) TCGA-CM-4743-01 5 115298920 115298920 C T AQPEP Silent p.Y202Y 0.24 TCGA-CM-4743-01 5 122372327 122372327 C A PPIC 5'UTR 0.29 TCGA-CM-4743-01 5 127728871 127728871 G A FBN2 Silent p.A474A 0.15 TCGA-CM-4743-01 5 129040030 129040030 A C ADAMTS19 Missense_Mutation p.E1080D 0.13 tolerated(0.09) possibly_damaging(0.53) TCGA-CM-4743-01 5 129040041 129040041 A T ADAMTS19 Missense_Mutation p.D1084V 0.12 deleterious(0) possibly_damaging(0.893) TCGA-CM-4743-01 5 130695131 130695131 T C CDC42SE2 5'UTR 0.20 TCGA-CM-4743-01 5 131657935 131657936 - T SLC22A4 Frame_Shift_Ins p.A240Cfs*40 0.19 TCGA-CM-4743-01 5 131728298 131728298 G A SLC22A5 Missense_Mutation p.V481I 0.19 tolerated(0.78) benign(0.008) TCGA-CM-4743-01 5 132150533 132150533 G A SOWAHA Missense_Mutation p.R407H 0.16 tolerated(0.11) benign(0.096) TCGA-CM-4743-01 5 134195054 134195054 T - C5orf24 3'UTR 0.24 TCGA-CM-4743-01 5 137521648 137521649 AG - KIF20A Splice_Site p.X709_splice 0.16 TCGA-CM-4743-01 5 140021652 140021652 C A TMCO6 Intron 0.18 TCGA-CM-4743-01 5 140053149 140053149 G A HARS 3'UTR 0.12 TCGA-CM-4743-01 5 140167993 140167993 G A PCDHA1 Silent p.A706A 0.21 TCGA-CM-4743-01 5 140187047 140187047 G A PCDHA4 Missense_Mutation p.R92Q 0.22 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-CM-4743-01 5 140209648 140209648 G A PCDHA6 Missense_Mutation p.A658T 0.28 deleterious_low_confidence(0.05) benign(0.152) TCGA-CM-4743-01 5 140209956 140209956 C T PCDHA6 Silent p.S760S 0.23 TCGA-CM-4743-01 5 140216117 140216117 C A PCDHA7 Missense_Mutation p.L717M 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.736) TCGA-CM-4743-01 5 140222411 140222411 G A PCDHA8 Missense_Mutation p.R502H 0.25 deleterious_low_confidence(0.01) benign(0.214) TCGA-CM-4743-01 5 140230126 140230126 G A PCDHA9 Silent p.A682A 0.23 TCGA-CM-4743-01 5 140230311 140230311 C T PCDHA9 Missense_Mutation p.A744V 0.20 deleterious_low_confidence(0.02) benign(0.105) TCGA-CM-4743-01 5 140231886 140231886 G A PCDHA9 Intron 0.20 TCGA-CM-4743-01 5 140264017 140264017 C T PCDHA13 Missense_Mutation p.R722W 0.26 deleterious_low_confidence(0) benign(0.337) TCGA-CM-4743-01 5 140431184 140431184 G A PCDHB1 Silent p.S43S 0.29 TCGA-CM-4743-01 5 140474755 140474755 C T PCDHB2 Silent p.D127D 0.23 TCGA-CM-4743-01 5 140480418 140480418 G - PCDHB3 Frame_Shift_Del p.A64Pfs*23 0.21 TCGA-CM-4743-01 5 140481754 140481754 C T PCDHB3 Silent p.N507N 0.20 TCGA-CM-4743-01 5 140573454 140573454 C T PCDHB10 Silent p.D443D 0.28 TCGA-CM-4743-01 5 140683544 140683544 G - SLC25A2 5'UTR 0.23 TCGA-CM-4743-01 5 140725091 140725091 G - PCDHGA3 Frame_Shift_Del p.A499Rfs*19 0.19 TCGA-CM-4743-01 5 140729950 140729950 C T PCDHGB1 Silent p.N41N 0.21 TCGA-CM-4743-01 5 140741818 140741818 G A PCDHGB2 Missense_Mutation p.A706T 0.19 tolerated(0.81) benign(0.02) TCGA-CM-4743-01 5 140753662 140753662 G A PCDHGA6 Silent p.P4P 0.15 TCGA-CM-4743-01 5 140755291 140755291 A G PCDHGA6 Silent p.S547S 0.11 TCGA-CM-4743-01 5 140792815 140792815 G A PCDHGA10 Missense_Mutation p.G25R 0.25 deleterious_low_confidence(0.05) benign(0.021) TCGA-CM-4743-01 5 140807541 140807541 G A PCDHGB6 Intron 0.27 TCGA-CM-4743-01 5 140869754 140869754 A G PCDHGC5 Missense_Mutation p.Y316C 0.21 deleterious(0) probably_damaging(0.938) TCGA-CM-4743-01 5 141026260 141026260 G A FCHSD1 Silent p.G318G 0.24 TCGA-CM-4743-01 5 141693932 141693932 G A SPRY4 Silent p.L271L 0.23 TCGA-CM-4743-01 5 141694416 141694416 G A SPRY4 Silent p.T109T 0.22 TCGA-CM-4743-01 5 14465652 14465652 A C TRIO Splice_Site p.X1890_splice 0.19 TCGA-CM-4743-01 5 145439569 145439569 G A SH3RF2 Missense_Mutation p.V566M 0.20 tolerated(0.25) benign(0.009) TCGA-CM-4743-01 5 145598653 145598653 C T RBM27 Silent p.V55V 0.07 TCGA-CM-4743-01 5 146778736 146778736 C T DPYSL3 Missense_Mutation p.R511H 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-CM-4743-01 5 149460418 149460418 G A CSF1R Silent p.N73N 0.20 TCGA-CM-4743-01 5 149514439 149514439 G A PDGFRB Silent p.L169L 0.22 TCGA-CM-4743-01 5 150925426 150925426 A G FAT2 Silent p.N1754N 0.22 TCGA-CM-4743-01 5 150947829 150947829 G A FAT2 Silent p.L222L 0.21 TCGA-CM-4743-01 5 153381940 153381940 G A FAM114A2 Missense_Mutation p.A376V 0.25 tolerated(0.17) benign(0.409) TCGA-CM-4743-01 5 154396784 154396784 G A KIF4B Missense_Mutation p.R1122H 0.18 deleterious(0.01) benign(0.049) TCGA-CM-4743-01 5 158250203 158250203 C T EBF1 Silent p.T253T 0.20 TCGA-CM-4743-01 5 158526458 158526458 C T EBF1 Missense_Mutation p.R10Q 0.20 deleterious_low_confidence(0.01) benign(0.206) TCGA-CM-4743-01 5 158595954 158595954 C T RNF145 Missense_Mutation p.V380I 0.16 tolerated(0.13) possibly_damaging(0.564) TCGA-CM-4743-01 5 15937047 15937047 G A FBXL7 Missense_Mutation p.G410S 0.24 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 5 160059367 160059367 T C ATP10B Silent p.R463R 0.23 TCGA-CM-4743-01 5 169141111 169141111 C G DOCK2 Missense_Mutation p.A580G 0.11 tolerated(0.49) benign(0) TCGA-CM-4743-01 5 169535540 169535540 C T FOXI1 Silent p.S354S 0.19 TCGA-CM-4743-01 5 172661863 172661863 C T NKX2-5 Missense_Mutation p.R75H 0.28 tolerated(0.13) benign(0.001) TCGA-CM-4743-01 5 173316900 173316900 G A CPEB4 Missense_Mutation p.S55N 0.24 tolerated_low_confidence(0.77) benign(0.001) TCGA-CM-4743-01 5 173380140 173380140 C T CPEB4 Silent p.Y609Y 0.24 TCGA-CM-4743-01 5 176013824 176013824 G A CDHR2 Missense_Mutation p.R946Q 0.23 tolerated(0.35) benign(0.003) TCGA-CM-4743-01 5 176084013 176084013 C - TSPAN17 Intron 0.20 TCGA-CM-4743-01 5 176332139 176332139 A - UIMC1 3'UTR 0.43 TCGA-CM-4743-01 5 176522579 176522579 G A FGFR4 Missense_Mutation p.R559Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 5 176861939 176861939 C T GRK6 Silent p.H322H 0.22 TCGA-CM-4743-01 5 176863198 176863200 GGA - GRK6 In_Frame_Del p.E396del 0.16 TCGA-CM-4743-01 5 176930369 176930369 T G DOK3 3'Flank 0.17 TCGA-CM-4743-01 5 177031468 177031468 C A B4GALT7 Silent p.P113P 0.19 TCGA-CM-4743-01 5 180420152 180420152 G - BTNL3 Frame_Shift_Del p.V131Wfs*66 0.17 TCGA-CM-4743-01 5 180475150 180475150 C T BTNL9 Silent p.I111I 0.20 TCGA-CM-4743-01 5 24505334 24505334 T C CDH10 Missense_Mutation p.D427G 0.16 deleterious(0.04) benign(0.072) TCGA-CM-4743-01 5 26890633 26890633 C A CDH9 Missense_Mutation p.G432C 0.14 deleterious(0.01) possibly_damaging(0.526) TCGA-CM-4743-01 5 32248913 32248913 G A MTMR12 Silent p.D287D 0.18 TCGA-CM-4743-01 5 32379277 32379277 G A ZFR Missense_Mutation p.R927C 0.23 deleterious(0) unknown(0) TCGA-CM-4743-01 5 32712124 32712124 G A NPR3 Missense_Mutation p.R81H 0.22 deleterious(0.01) possibly_damaging(0.658) TCGA-CM-4743-01 5 33937437 33937437 C T RXFP3 Missense_Mutation p.R198W 0.28 tolerated(0.12) benign(0.004) TCGA-CM-4743-01 5 36035969 36035969 G A UGT3A2 Missense_Mutation p.A468V 0.24 deleterious(0.05) possibly_damaging(0.73) TCGA-CM-4743-01 5 41382520 41382520 G T PLCXD3 Silent p.R74R 0.21 TCGA-CM-4743-01 5 428001 428001 G A AHRR Missense_Mutation p.R285Q 0.20 tolerated(0.66) benign(0.293) TCGA-CM-4743-01 5 44815166 44815166 G T MRPS30 Missense_Mutation p.W394C 0.18 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 5 45396696 45396696 C T HCN1 Missense_Mutation p.M376I 0.27 tolerated(0.19) benign(0.182) TCGA-CM-4743-01 5 462374 462374 G A EXOC3 Silent p.A535A 0.23 TCGA-CM-4743-01 5 52211330 52211330 T - ITGA1 Frame_Shift_Del p.F633Lfs*11 0.17 TCGA-CM-4743-01 5 52781596 52781596 A T FST Intron 0.19 TCGA-CM-4743-01 5 5464515 5464515 C T KIAA0947 Missense_Mutation p.R1690C 0.23 tolerated(0.18) benign(0.004) TCGA-CM-4743-01 5 54948375 54948375 A - SLC38A9 Frame_Shift_Del p.S312Qfs*6 0.19 TCGA-CM-4743-01 5 57913591 57913591 G A RAB3C Missense_Mutation p.R49H 0.17 deleterious(0.04) probably_damaging(0.918) TCGA-CM-4743-01 5 63802474 63802474 G A RGS7BP Missense_Mutation p.R8H 0.30 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-CM-4743-01 5 65108117 65108117 G - NLN Frame_Shift_Del p.G628Dfs*29 0.17 TCGA-CM-4743-01 5 68716145 68716146 TG - MARVELD2 Frame_Shift_Del p.V312Efs*2 0.18 TCGA-CM-4743-01 5 72851349 72851349 G A ANKRA2 Silent p.H192H 0.15 TCGA-CM-4743-01 5 78322349 78322349 G A DMGDH Silent p.D696D 0.21 TCGA-CM-4743-01 5 80409523 80409523 A G RASGRF2 Missense_Mutation p.N752D 0.20 tolerated_low_confidence(0.37) benign(0.297) TCGA-CM-4743-01 5 82815322 82815322 A T VCAN Silent p.G399G 0.24 TCGA-CM-4743-01 5 82841389 82841389 A G VCAN Missense_Mutation p.N3100S 0.25 deleterious(0) possibly_damaging(0.842) TCGA-CM-4743-01 5 90074697 90074697 A G GPR98 Missense_Mutation p.I4289V 0.17 benign(0) TCGA-CM-4743-01 5 90669611 90669611 T C ARRDC3 Missense_Mutation p.N360D 0.14 tolerated(0.4) benign(0.005) TCGA-CM-4743-01 5 94208876 94208877 - T MCTP1 Frame_Shift_Ins p.N668Kfs*5 0.19 TCGA-CM-4743-01 5 96139231 96139231 C T ERAP1 Silent p.L133L 0.21 TCGA-CM-4743-01 6 107361391 107361391 C T C6orf203 Missense_Mutation p.R148W 0.27 deleterious(0.03) benign(0.135) TCGA-CM-4743-01 6 108093512 108093512 G A SCML4 Missense_Mutation p.P7L 0.19 deleterious(0) benign(0.356) TCGA-CM-4743-01 6 117586818 117586818 G A VGLL2 5'UTR 0.38 TCGA-CM-4743-01 6 128304409 128304409 C T PTPRK Missense_Mutation p.R1128H 0.25 deleterious(0) possibly_damaging(0.779) TCGA-CM-4743-01 6 129828689 129828689 C T LAMA2 Missense_Mutation p.A2920V 0.21 tolerated(0.58) benign(0.004) TCGA-CM-4743-01 6 130407306 130407306 A - L3MBTL3 Frame_Shift_Del p.M479* 0.19 TCGA-CM-4743-01 6 130761593 130761593 C T TMEM200A Missense_Mutation p.T9I 0.25 tolerated(0.08) probably_damaging(0.942) TCGA-CM-4743-01 6 132643885 132643885 T C MOXD1 Missense_Mutation p.Y413C 0.20 tolerated(0.07) probably_damaging(0.971) TCGA-CM-4743-01 6 136597439 136597439 A G BCLAF1 Silent p.Y408Y 0.09 TCGA-CM-4743-01 6 137814620 137814620 C T OLIG3 Missense_Mutation p.G230S 0.27 tolerated(1) benign(0.137) TCGA-CM-4743-01 6 139456522 139456522 C T HECA 5'UTR 0.25 TCGA-CM-4743-01 6 13979931 13979931 A - RNF182 3'UTR 0.14 TCGA-CM-4743-01 6 146266724 146266724 T - SHPRH Frame_Shift_Del p.G458Efs*26 0.17 TCGA-CM-4743-01 6 151673000 151673000 C - AKAP12 Frame_Shift_Del p.P1160Lfs*18 0.16 TCGA-CM-4743-01 6 152265339 152265339 G T ESR1 Missense_Mutation p.M264I 0.17 tolerated(0.77) benign(0.001) TCGA-CM-4743-01 6 157527948 157527948 C T ARID1B Silent p.D1891D 0.17 TCGA-CM-4743-01 6 159184393 159184393 G A SYTL3 Silent p.K525K 0.26 TCGA-CM-4743-01 6 163987695 163987695 T - QKI Intron 0.17 TCGA-CM-4743-01 6 168349109 168349109 A - MLLT4 Frame_Shift_Del p.K1255Sfs*38 0.21 TCGA-CM-4743-01 6 169626326 169626326 G A THBS2 Silent p.D829D 0.28 TCGA-CM-4743-01 6 20102425 20102425 C T MBOAT1 3'UTR 0.32 TCGA-CM-4743-01 6 21596817 21596817 C T SOX4 3'UTR 0.24 TCGA-CM-4743-01 6 24358419 24358419 C T KAAG1 3'UTR 0.21 TCGA-CM-4743-01 6 24523152 24523152 A G ALDH5A1 Missense_Mutation p.K404R 0.26 deleterious(0.01) possibly_damaging(0.754) TCGA-CM-4743-01 6 25606456 25606456 G A LRRC16A Missense_Mutation p.A1268T 0.16 deleterious_low_confidence(0.03) benign(0.005) TCGA-CM-4743-01 6 26247138 26247138 A G HIST1H4G Missense_Mutation p.L23P 0.20 deleterious(0.02) probably_damaging(0.954) TCGA-CM-4743-01 6 27775998 27775998 G A HIST1H2AI Missense_Mutation p.R4H 0.13 tolerated_low_confidence(0.07) benign(0.006) TCGA-CM-4743-01 6 28053623 28053623 C T ZNF165 Missense_Mutation p.T122I 0.26 deleterious(0.02) possibly_damaging(0.549) TCGA-CM-4743-01 6 29595366 29595366 C T GABBR1 Missense_Mutation p.G185D 0.24 deleterious(0.01) possibly_damaging(0.697) TCGA-CM-4743-01 6 29598321 29598321 C T GABBR1 Missense_Mutation p.R130Q 0.16 tolerated_low_confidence(0.26) benign(0.196) TCGA-CM-4743-01 6 30653512 30653512 C T PPP1R18 Missense_Mutation p.R95Q 0.20 tolerated(0.17) possibly_damaging(0.872) TCGA-CM-4743-01 6 30695672 30695672 G T FLOT1 3'UTR 0.31 TCGA-CM-4743-01 6 31127243 31127243 G A TCF19 5'UTR 0.24 TCGA-CM-4743-01 6 31238056 31238056 C T HLA-C Missense_Mutation p.G276R 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-4743-01 6 31632209 31632209 C T GPANK1 Missense_Mutation p.S16N 0.22 tolerated(0.09) benign(0.027) TCGA-CM-4743-01 6 31734253 31734253 G T VWA7 Missense_Mutation p.P724H 0.19 tolerated(0.32) probably_damaging(0.991) TCGA-CM-4743-01 6 31734294 31734294 C T VWA7 Silent p.R710R 0.20 TCGA-CM-4743-01 6 31779398 31779398 G A HSPA1L Missense_Mutation p.P118S 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-4743-01 6 31842534 31842535 - T SLC44A4 Frame_Shift_Ins p.N144Kfs*55 0.20 TCGA-CM-4743-01 6 31856178 31856178 G T EHMT2 Missense_Mutation p.H491N 0.24 deleterious(0) probably_damaging(0.977) TCGA-CM-4743-01 6 31868966 31868966 G A ZBTB12 Silent p.A39A 0.23 TCGA-CM-4743-01 6 32798511 32798511 G A TAP2 Nonsense_Mutation p.R449* 0.26 TCGA-CM-4743-01 6 32798530 32798532 CTT - TAP2 In_Frame_Del p.K442del 0.20 TCGA-CM-4743-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.11 TCGA-CM-4743-01 6 32944477 32944477 C T BRD2 Missense_Mutation p.R322C 0.18 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 6 33043763 33043763 G A HLA-DPB1 5'UTR 0.23 TCGA-CM-4743-01 6 33178990 33178990 G - RING1 Frame_Shift_Del p.E173Kfs*14 0.31 TCGA-CM-4743-01 6 33286533 33286533 G C DAXX Nonsense_Mutation p.S737* 0.24 TCGA-CM-4743-01 6 33391288 33391288 C T SYNGAP1 Silent p.Y34Y 0.19 TCGA-CM-4743-01 6 33995915 33995915 C T GRM4 Missense_Mutation p.E891K 0.26 deleterious_low_confidence(0.02) benign(0.098) TCGA-CM-4743-01 6 35987375 35987375 T C SLC26A8 Missense_Mutation p.Q37R 0.19 tolerated(0.06) benign(0.02) TCGA-CM-4743-01 6 39283980 39283980 C - KCNK16 Intron 0.27 TCGA-CM-4743-01 6 4087954 4087954 A - C6orf201 Frame_Shift_Del p.K28Nfs*10 0.23 TCGA-CM-4743-01 6 41001727 41001727 G T UNC5CL Silent p.T193T 0.24 TCGA-CM-4743-01 6 41011818 41011818 T C TSPO2 Missense_Mutation p.L152P 0.22 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 6 43106991 43106991 G A PTK7 Missense_Mutation p.A502T 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-CM-4743-01 6 43469422 43469422 G A TJAP1 Missense_Mutation p.R96H 0.19 deleterious(0.03) possibly_damaging(0.686) TCGA-CM-4743-01 6 43597362 43597362 C T MAD2L1BP 5'UTR 0.24 TCGA-CM-4743-01 6 43738571 43738571 A T VEGFA Missense_Mutation p.E43V 0.16 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-CM-4743-01 6 44151748 44151748 G A CAPN11 3'UTR 0.24 TCGA-CM-4743-01 6 46129256 46129256 A G ENPP5 Missense_Mutation p.I414T 0.25 tolerated(0.72) benign(0) TCGA-CM-4743-01 6 49676895 49676895 C T CRISP2 Silent p.P5P 0.24 TCGA-CM-4743-01 6 50810928 50810928 G A TFAP2B Silent p.T402T 0.21 TCGA-CM-4743-01 6 53370295 53370295 C A GCLC Splice_Site p.X431_splice 0.05 TCGA-CM-4743-01 6 5369270 5369270 C T FARS2 Missense_Mutation p.T156M 0.26 deleterious(0.04) probably_damaging(0.983) TCGA-CM-4743-01 6 56989653 56989653 T C ZNF451 Missense_Mutation p.F103S 0.18 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 6 6225075 6225075 C T F13A1 Missense_Mutation p.E273K 0.24 tolerated(0.42) benign(0.106) TCGA-CM-4743-01 6 62995783 62995783 G A KHDRBS2 Missense_Mutation p.A24V 0.26 deleterious(0.05) probably_damaging(0.98) TCGA-CM-4743-01 6 66204688 66204689 - C EYS Frame_Shift_Ins p.F206Vfs*10 0.17 TCGA-CM-4743-01 6 70926474 70926474 A G COL9A1 3'UTR 0.26 TCGA-CM-4743-01 6 71665959 71665959 G A B3GAT2 Silent p.G58G 0.33 TCGA-CM-4743-01 6 74072895 74072895 G A KHDC3L Missense_Mutation p.G83S 0.24 deleterious(0.03) probably_damaging(0.984) TCGA-CM-4743-01 6 7583862 7583862 C T DSP Missense_Mutation p.R2123C 0.29 probably_damaging(0.999) TCGA-CM-4743-01 6 75853015 75853015 G A COL12A1 Missense_Mutation p.R1594C 0.28 probably_damaging(0.977) TCGA-CM-4743-01 6 84569561 84569562 - G CYB5R4 Frame_Shift_Ins p.R23Afs*2 0.21 TCGA-CM-4743-01 6 90039638 90039638 T C UBE2J1 Silent p.Q239Q 0.22 TCGA-CM-4743-01 6 90661336 90661336 C T BACH2 Silent p.E163E 0.20 TCGA-CM-4743-01 6 96971106 96971106 G T UFL1 Missense_Mutation p.K54N 0.21 deleterious(0) probably_damaging(0.983) TCGA-CM-4743-01 6 97620979 97620979 T - MMS22L Frame_Shift_Del p.V934Ffs*8 0.17 TCGA-CM-4743-01 7 100417792 100417792 C T EPHB4 Missense_Mutation p.R312H 0.20 tolerated(0.06) benign(0.001) TCGA-CM-4743-01 7 100680380 100680380 A G MUC17 Missense_Mutation p.S1895G 0.19 benign(0.153) TCGA-CM-4743-01 7 100962241 100962241 C T RABL5 Missense_Mutation p.V38M 0.21 deleterious(0) probably_damaging(0.947) TCGA-CM-4743-01 7 100962283 100962283 T C RABL5 Missense_Mutation p.T24A 0.19 tolerated(0.4) benign(0.017) TCGA-CM-4743-01 7 103175933 103175933 T C RELN Splice_Site p.X2394_splice 0.12 TCGA-CM-4743-01 7 1040129 1040129 G A C7orf50 Silent p.L128L 0.23 TCGA-CM-4743-01 7 105672941 105672941 C A CDHR3 Missense_Mutation p.A819D 0.26 deleterious(0.03) benign(0.054) TCGA-CM-4743-01 7 110763764 110763764 A - LRRN3 Frame_Shift_Del p.I314* 0.15 TCGA-CM-4743-01 7 11076685 11076685 T C PHF14 Silent p.N649N 0.24 TCGA-CM-4743-01 7 11415481 11415481 T C THSD7A Silent p.R1638R 0.03 TCGA-CM-4743-01 7 114582429 114582429 C A MDFIC Missense_Mutation p.P174H 0.22 tolerated_low_confidence(0.59) benign(0.01) TCGA-CM-4743-01 7 122339045 122339045 G A RNF133 5'UTR 0.18 TCGA-CM-4743-01 7 123332675 123332675 G T WASL Missense_Mutation p.P358H 0.20 tolerated(0.07) unknown(0) TCGA-CM-4743-01 7 127014372 127014373 - T ZNF800 Frame_Shift_Ins p.S340Ifs*3 0.18 TCGA-CM-4743-01 7 127238521 127238521 C - FSCN3 Frame_Shift_Del p.L333Wfs*34 0.12 TCGA-CM-4743-01 7 128470866 128470866 G A FLNC Missense_Mutation p.D59N 0.26 tolerated(0.82) probably_damaging(0.964) TCGA-CM-4743-01 7 131910974 131910974 C T PLXNA4 Missense_Mutation p.G643D 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 7 133906656 133906656 A - LRGUK Frame_Shift_Del p.T659Hfs*19 0.18 TCGA-CM-4743-01 7 134001501 134001501 C T SLC35B4 Translation_Start_Site p.M1? 0.16 deleterious(0.04) possibly_damaging(0.851) TCGA-CM-4743-01 7 142640109 142640109 G T KEL Silent p.A598A 0.20 TCGA-CM-4743-01 7 142723544 142723544 A G OR9A2 Missense_Mutation p.S226P 0.22 deleterious(0) probably_damaging(0.932) TCGA-CM-4743-01 7 143096355 143096355 G A EPHA1 Silent p.C329C 0.22 TCGA-CM-4743-01 7 147336195 147336195 C T CNTNAP2 Intron 0.24 TCGA-CM-4743-01 7 147869511 147869511 A G CNTNAP2 Missense_Mutation p.Y984C 0.22 tolerated(0.14) probably_damaging(0.988) TCGA-CM-4743-01 7 147926793 147926793 C T CNTNAP2 Silent p.D1101D 0.20 TCGA-CM-4743-01 7 149501110 149501110 G - SSPO RNA 0.24 TCGA-CM-4743-01 7 149547410 149547410 A C ZNF862 Missense_Mutation p.E367A 0.29 deleterious_low_confidence(0.01) benign(0.125) TCGA-CM-4743-01 7 150069992 150069992 C T REPIN1 Silent p.D611D 0.26 TCGA-CM-4743-01 7 150324759 150324759 G - GIMAP6 3'UTR 0.18 TCGA-CM-4743-01 7 151052876 151052876 C T NUB1 Silent p.G170G 0.16 TCGA-CM-4743-01 7 154561148 154561148 T A DPP6 Missense_Mutation p.I302N 0.20 deleterious(0.01) probably_damaging(0.972) TCGA-CM-4743-01 7 155534785 155534785 A - RBM33 Frame_Shift_Del p.T776Qfs*17 0.20 TCGA-CM-4743-01 7 157367102 157367102 A G PTPRN2 Intron 0.20 TCGA-CM-4743-01 7 16655505 16655505 A G ANKMY2 Missense_Mutation p.I132T 0.27 deleterious(0) possibly_damaging(0.721) TCGA-CM-4743-01 7 1732863 1732863 G A AC074389.6 3'UTR 0.24 TCGA-CM-4743-01 7 17861185 17861185 T - SNX13 Frame_Shift_Del p.T598Pfs*13 0.20 TCGA-CM-4743-01 7 17937009 17937009 C T SNX13 Missense_Mutation p.G25R 0.23 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 7 21939708 21939708 G T DNAH11 Missense_Mutation p.G4432C 0.19 probably_damaging(1) TCGA-CM-4743-01 7 22196435 22196435 C T RAPGEF5 Silent p.T390T 0.21 TCGA-CM-4743-01 7 2252882 2252882 C T MAD1L1 Nonsense_Mutation p.W317* 0.23 TCGA-CM-4743-01 7 23313915 23313915 T - GPNMB 3'UTR 0.20 TCGA-CM-4743-01 7 27809349 27809349 G A TAX1BP1 Missense_Mutation p.V170I 0.24 tolerated(0.06) probably_damaging(0.982) TCGA-CM-4743-01 7 27872572 27872572 G A JAZF1 Silent p.H193H 0.19 TCGA-CM-4743-01 7 29983636 29983636 C T SCRN1 Silent p.V187V 0.17 TCGA-CM-4743-01 7 31682385 31682385 C A CCDC129 Missense_Mutation p.D493E 0.31 deleterious(0.03) benign(0.426) TCGA-CM-4743-01 7 31682634 31682634 G T CCDC129 Missense_Mutation p.E576D 0.26 tolerated(0.27) benign(0.081) TCGA-CM-4743-01 7 40102463 40102463 G A CDK13 Missense_Mutation p.R880H 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CM-4743-01 7 45222802 45222802 G A RAMP3 Missense_Mutation p.V80M 0.11 deleterious(0.02) benign(0.404) TCGA-CM-4743-01 7 4800860 4800860 C T FOXK1 Missense_Mutation p.A621V 0.20 tolerated(0.09) possibly_damaging(0.642) TCGA-CM-4743-01 7 48147002 48147002 G A UPP1 Missense_Mutation p.D231N 0.18 deleterious(0.04) benign(0.054) TCGA-CM-4743-01 7 48318016 48318016 C A ABCA13 Missense_Mutation p.L2409I 0.25 probably_damaging(0.938) TCGA-CM-4743-01 7 48411860 48411860 C T ABCA13 Silent p.A3633A 0.25 TCGA-CM-4743-01 7 49815049 49815049 G A VWC2 Silent p.A6A 0.25 TCGA-CM-4743-01 7 5104132 5104132 G A RBAK Missense_Mutation p.E349K 0.11 tolerated(0.07) possibly_damaging(0.823) TCGA-CM-4743-01 7 53104429 53104429 A G POM121L12 3'UTR 0.27 TCGA-CM-4743-01 7 5352752 5352752 G A TNRC18 Silent p.N2590N 0.32 TCGA-CM-4743-01 7 55493032 55493032 G T LANCL2 Missense_Mutation p.G365V 0.19 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 7 56023013 56023013 G A MRPS17 3'UTR 0.24 TCGA-CM-4743-01 7 5765012 5765012 T - RNF216 Frame_Shift_Del p.R483Gfs*7 0.20 TCGA-CM-4743-01 7 6057559 6057559 C T AIMP2 Missense_Mutation p.H153Y 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-CM-4743-01 7 6187422 6187422 G A USP42 Missense_Mutation p.G429S 0.26 deleterious(0.04) possibly_damaging(0.48) TCGA-CM-4743-01 7 62758702 62758702 A C ZNF733P RNA 0.16 TCGA-CM-4743-01 7 63505990 63505990 A G ZNF727 5'UTR 0.24 TCGA-CM-4743-01 7 65705979 65705979 A G TPST1 Silent p.S189S 0.22 TCGA-CM-4743-01 7 66767703 66767703 T C Y_RNA 5'Flank 0.22 TCGA-CM-4743-01 7 72396949 72396949 G T POM121 5'UTR 0.20 TCGA-CM-4743-01 7 72413479 72413479 G A POM121 Missense_Mutation p.A718T 0.13 tolerated(0.99) benign(0.023) TCGA-CM-4743-01 7 73458220 73458220 C T ELN Missense_Mutation p.P147S 0.20 unknown(0) TCGA-CM-4743-01 7 7472129 7472129 C T COL28A1 Missense_Mutation p.R658H 0.28 tolerated(0.09) benign(0.001) TCGA-CM-4743-01 7 75890723 75890723 G A SRRM3 Missense_Mutation p.R210H 0.24 deleterious(0.02) unknown(0) TCGA-CM-4743-01 7 76889449 76889449 T C CCDC146 Silent p.V294V 0.17 TCGA-CM-4743-01 7 77572064 77572064 C T PHTF2 Silent p.F606F 0.17 TCGA-CM-4743-01 7 82544336 82544336 T C PCLO Silent p.E4322E 0.21 TCGA-CM-4743-01 7 82584500 82584500 A G PCLO Silent p.H1923H 0.21 TCGA-CM-4743-01 7 84636129 84636129 G A SEMA3D Missense_Mutation p.H633Y 0.24 tolerated(0.11) benign(0.417) TCGA-CM-4743-01 7 87051527 87051527 G A ABCB4 Silent p.G742G 0.04 TCGA-CM-4743-01 7 90419931 90419933 GAA - CDK14 In_Frame_Del p.E154del 0.22 TCGA-CM-4743-01 7 92838118 92838118 C T HEPACAM2 Missense_Mutation p.G263R 0.11 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 7 92905660 92905661 - T CCDC132 Intron 0.16 TCGA-CM-4743-01 7 98457804 98457804 G A TMEM130 Silent p.D183D 0.17 TCGA-CM-4743-01 7 98984342 98984342 T C ARPC1B Silent p.H33H 0.17 TCGA-CM-4743-01 7 99971219 99971219 G T PILRA 5'UTR 0.13 TCGA-CM-4743-01 8 101648235 101648235 C A SNX31 Missense_Mutation p.R49M 0.19 deleterious(0) possibly_damaging(0.59) TCGA-CM-4743-01 8 103850990 103850990 C T AZIN1 Missense_Mutation p.R144H 0.18 deleterious(0) probably_damaging(0.971) TCGA-CM-4743-01 8 10467811 10467811 G A RP1L1 Missense_Mutation p.A1266V 0.25 benign(0.153) TCGA-CM-4743-01 8 105503743 105503743 G A LRP12 Silent p.L580L 0.16 TCGA-CM-4743-01 8 121327785 121327785 A - COL14A1 Frame_Shift_Del p.G1524Efs*48 0.14 TCGA-CM-4743-01 8 127569151 127569151 G A FAM84B Missense_Mutation p.R162C 0.12 tolerated(0.12) probably_damaging(0.984) TCGA-CM-4743-01 8 132052013 132052013 G A ADCY8 Silent p.D189D 0.20 TCGA-CM-4743-01 8 140743452 140743452 G A TRAPPC9 Missense_Mutation p.S1198L 0.24 tolerated(0.67) benign(0.086) TCGA-CM-4743-01 8 142204214 142204216 AGA - DENND3 In_Frame_Del p.K1161del 0.20 TCGA-CM-4743-01 8 142367851 142367851 G A GPR20 Missense_Mutation p.A58V 0.25 tolerated(1) benign(0.001) TCGA-CM-4743-01 8 143746309 143746309 G A JRK RNA 0.15 TCGA-CM-4743-01 8 144461114 144461114 A G RHPN1 Missense_Mutation p.Q206R 0.23 deleterious(0) probably_damaging(0.981) TCGA-CM-4743-01 8 144644474 144644474 G A GSDMD Silent p.V364V 0.15 TCGA-CM-4743-01 8 144895081 144895081 C T SCRIB Silent p.R231R 0.21 TCGA-CM-4743-01 8 144895639 144895639 C T SCRIB Splice_Site p.X168_splice 0.20 TCGA-CM-4743-01 8 144899298 144899298 G A PUF60 Missense_Mutation p.P388S 0.15 deleterious(0.03) possibly_damaging(0.447) TCGA-CM-4743-01 8 144941672 144941672 C T EPPK1 Missense_Mutation p.S1917N 0.24 possibly_damaging(0.897) TCGA-CM-4743-01 8 144998275 144998275 T G PLEC Missense_Mutation p.K2078T 0.19 unknown(0) TCGA-CM-4743-01 8 145049520 145049520 A G PARP10 3'Flank 0.29 TCGA-CM-4743-01 8 145095189 145095189 C - SPATC1 Frame_Shift_Del p.L199Sfs*20 0.11 TCGA-CM-4743-01 8 145113270 145113270 A G OPLAH Missense_Mutation p.L274P 0.25 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 8 145247216 145247216 T C MROH1 Missense_Mutation p.L287P 0.15 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 8 145512975 145512975 A T BOP1 Missense_Mutation p.L37H 0.25 tolerated_low_confidence(0.15) possibly_damaging(0.869) TCGA-CM-4743-01 8 145722575 145722575 G A PPP1R16A 5'UTR 0.23 TCGA-CM-4743-01 8 145727027 145727027 C - PPP1R16A Frame_Shift_Del p.H445Tfs*15 0.19 TCGA-CM-4743-01 8 146015856 146015856 C A RPL8 Splice_Site p.X167_splice 0.18 TCGA-CM-4743-01 8 146076432 146076432 G A COMMD5 Missense_Mutation p.R98C 0.23 deleterious(0.03) probably_damaging(0.961) TCGA-CM-4743-01 8 15977954 15977954 C T MSR1 Missense_Mutation p.V399M 0.18 deleterious(0) probably_damaging(0.995) TCGA-CM-4743-01 8 17092330 17092330 G A CNOT7 Silent p.N171N 0.24 TCGA-CM-4743-01 8 17402081 17402081 T - SLC7A2 Frame_Shift_Del p.F208Lfs*9 0.16 TCGA-CM-4743-01 8 17843104 17843104 A G PCM1 Silent p.R1419R 0.20 TCGA-CM-4743-01 8 182347 182347 G C ZNF596 5'Flank 0.16 TCGA-CM-4743-01 8 1876810 1876810 A - ARHGEF10 Frame_Shift_Del p.E972Gfs*16 0.26 TCGA-CM-4743-01 8 21905756 21905756 C T FGF17 Missense_Mutation p.T216M 0.27 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-CM-4743-01 8 22442615 22442615 G T PDLIM2 Missense_Mutation p.S384I 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-CM-4743-01 8 22969319 22969319 G T TNFRSF10C Missense_Mutation p.K49N 0.32 tolerated_low_confidence(0.15) benign(0.446) TCGA-CM-4743-01 8 23059403 23059403 T C TNFRSF10A Missense_Mutation p.T183A 0.21 deleterious(0.01) possibly_damaging(0.729) TCGA-CM-4743-01 8 24324311 24324311 G T ADAM7 Splice_Site p.X130_splice 0.25 TCGA-CM-4743-01 8 25708274 25708274 A G EBF2 Missense_Mutation p.M511T 0.25 tolerated_low_confidence(0.14) possibly_damaging(0.599) TCGA-CM-4743-01 8 30889335 30889335 T A PURG Missense_Mutation p.R322W 0.21 deleterious(0) probably_damaging(0.998) TCGA-CM-4743-01 8 30890118 30890118 C T PURG Missense_Mutation p.A61T 0.22 deleterious(0) probably_damaging(0.914) TCGA-CM-4743-01 8 37555860 37555860 C A ZNF703 Missense_Mutation p.L481I 0.15 deleterious(0) probably_damaging(0.992) TCGA-CM-4743-01 8 37729753 37729753 G T RAB11FIP1 Missense_Mutation p.S856Y 0.24 deleterious_low_confidence(0.03) benign(0.444) TCGA-CM-4743-01 8 41792011 41792011 C - KAT6A Frame_Shift_Del p.D1243Mfs*51 0.19 TCGA-CM-4743-01 8 42038181 42038181 G - PLAT Frame_Shift_Del p.Y304* 0.12 TCGA-CM-4743-01 8 48878898 48878898 C T MCM4 Silent p.C328C 0.15 TCGA-CM-4743-01 8 49831241 49831242 TG - SNAI2 3'UTR 0.13 TCGA-CM-4743-01 8 55372523 55372523 G A SOX17 Missense_Mutation p.A405T 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-CM-4743-01 8 56015655 56015655 G A XKR4 Missense_Mutation p.G203R 0.18 tolerated(0.26) possibly_damaging(0.71) TCGA-CM-4743-01 8 57876572 57876572 G A IMPAD1 Missense_Mutation p.A287V 0.21 deleterious(0.04) probably_damaging(0.951) TCGA-CM-4743-01 8 59059119 59059119 C T FAM110B Silent p.G110G 0.23 TCGA-CM-4743-01 8 59060962 59060962 T C FAM110B 3'UTR 0.22 TCGA-CM-4743-01 8 59498553 59498553 C T NSMAF Missense_Mutation p.R849H 0.21 deleterious(0.01) probably_damaging(0.91) TCGA-CM-4743-01 8 59536277 59536277 C T NSMAF Silent p.T180T 0.26 TCGA-CM-4743-01 8 61754276 61754276 A G CHD7 Missense_Mutation p.K1536R 0.20 probably_damaging(0.986) TCGA-CM-4743-01 8 623646 623646 C T ERICH1 Missense_Mutation p.D236N 0.20 tolerated(0.17) benign(0.052) TCGA-CM-4743-01 8 65494196 65494196 C T BHLHE22 Silent p.I283I 0.21 TCGA-CM-4743-01 8 68145100 68145102 CAA - ARFGEF1 In_Frame_Del p.V1123del 0.21 TCGA-CM-4743-01 8 69028025 69028025 C T PREX2 Missense_Mutation p.R1062C 0.18 deleterious_low_confidence(0.01) benign(0.174) TCGA-CM-4743-01 8 69351815 69351815 A T C8orf34 Missense_Mutation p.N137Y 0.16 tolerated(0.06) possibly_damaging(0.476) TCGA-CM-4743-01 8 75898236 75898236 C T CRISPLD1 Missense_Mutation p.A5V 0.17 tolerated(0.81) benign(0.001) TCGA-CM-4743-01 8 77616665 77616665 C T ZFHX4 Silent p.S114S 0.19 TCGA-CM-4743-01 8 77617220 77617220 T C ZFHX4 Silent p.H299H 0.22 TCGA-CM-4743-01 8 77765321 77765322 - T ZFHX4 Frame_Shift_Ins p.P2058Tfs*82 0.11 TCGA-CM-4743-01 8 8175654 8175654 A G SGK223 3'UTR 0.19 TCGA-CM-4743-01 8 86057738 86057738 G A LRRCC1 Missense_Mutation p.D1031N 0.21 deleterious(0.02) possibly_damaging(0.479) TCGA-CM-4743-01 8 87126099 87126099 A G ATP6V0D2 Missense_Mutation p.T98A 0.25 deleterious(0.01) benign(0.005) TCGA-CM-4743-01 8 8998285 8998285 G A PPP1R3B 3'UTR 0.23 TCGA-CM-4743-01 8 93074909 93074909 G A RUNX1T1 Intron 0.15 TCGA-CM-4743-01 8 95186431 95186431 C T CDH17 Missense_Mutation p.G161D 0.24 deleterious(0) possibly_damaging(0.795) TCGA-CM-4743-01 8 97258678 97258678 C T MTERFD1 Missense_Mutation p.A228T 0.14 tolerated(0.48) benign(0.051) TCGA-CM-4743-01 9 101980107 101980107 T - ALG2 3'UTR 0.21 TCGA-CM-4743-01 9 104335708 104335708 C A GRIN3A Missense_Mutation p.E1032D 0.04 tolerated(0.24) benign(0.242) TCGA-CM-4743-01 9 107289482 107289482 C A OR13C4 Missense_Mutation p.K3N 0.43 tolerated(0.26) benign(0.004) TCGA-CM-4743-01 9 107367107 107367107 G C OR13C2 Missense_Mutation p.L268V 0.19 tolerated(0.25) benign(0.403) TCGA-CM-4743-01 9 108072084 108072084 G A SLC44A1 Missense_Mutation p.C69Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 9 109689860 109689860 G A ZNF462 Missense_Mutation p.A1223T 0.15 probably_damaging(0.993) TCGA-CM-4743-01 9 111653502 111653502 G A IKBKAP Silent p.G1047G 0.08 TCGA-CM-4743-01 9 111903820 111903820 C T FRRS1L Missense_Mutation p.R222H 0.24 tolerated(0.15) benign(0.052) TCGA-CM-4743-01 9 113341855 113341855 G A SVEP1 5'UTR 0.31 TCGA-CM-4743-01 9 114180257 114180257 C T KIAA0368 Missense_Mutation p.R708H 0.20 deleterious(0.01) possibly_damaging(0.635) TCGA-CM-4743-01 9 115166398 115166398 T C HSDL2 Silent p.H47H 0.17 TCGA-CM-4743-01 9 116930996 116930996 T C COL27A1 Silent p.P387P 0.27 TCGA-CM-4743-01 9 117266606 117266606 C - DFNB31 Frame_Shift_Del p.G159Afs*18 0.18 TCGA-CM-4743-01 9 121929328 121929328 A G BRINP1 3'UTR 0.25 TCGA-CM-4743-01 9 123550475 123550475 G A FBXW2 Missense_Mutation p.T21M 0.18 deleterious(0) benign(0.354) TCGA-CM-4743-01 9 123768282 123768282 T C C5 Missense_Mutation p.E826G 0.22 deleterious(0.04) possibly_damaging(0.542) TCGA-CM-4743-01 9 123924525 123924525 A - CNTRL Frame_Shift_Del p.K1802Sfs*9 0.21 TCGA-CM-4743-01 9 124522408 124522408 G A DAB2IP Missense_Mutation p.R259H 0.20 deleterious(0) possibly_damaging(0.666) TCGA-CM-4743-01 9 124979545 124979545 G A LHX6 Missense_Mutation p.R162W 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-CM-4743-01 9 125273127 125273127 G T OR1J2 Missense_Mutation p.G16V 0.21 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CM-4743-01 9 125289267 125289267 A C OR1N1 Missense_Mutation p.F102L 0.21 tolerated(0.24) possibly_damaging(0.53) TCGA-CM-4743-01 9 125330389 125330389 C T OR1L8 Missense_Mutation p.R123H 0.17 deleterious(0.03) benign(0.013) TCGA-CM-4743-01 9 125391090 125391090 C T OR1B1 Missense_Mutation p.R242Q 0.24 deleterious(0.02) benign(0.045) TCGA-CM-4743-01 9 125612088 125612088 T - RC3H2 Frame_Shift_Del p.T1132Qfs*5 0.24 TCGA-CM-4743-01 9 12694024 12694024 G T TYRP1 Missense_Mutation p.G10C 0.21 tolerated(0.1) benign(0.004) TCGA-CM-4743-01 9 127563842 127563842 G A OLFML2A Silent p.Q273Q 0.28 TCGA-CM-4743-01 9 127618167 127618167 G A WDR38 Missense_Mutation p.S112N 0.06 deleterious(0.05) possibly_damaging(0.717) TCGA-CM-4743-01 9 12775682 12775682 T G LURAP1L 5'UTR 0.26 TCGA-CM-4743-01 9 128001560 128001562 TTC - HSPA5 In_Frame_Del p.K218del 0.17 TCGA-CM-4743-01 9 128099755 128099755 G A GAPVD1 Missense_Mutation p.R948H 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CM-4743-01 9 130207126 130207127 CA - ZNF79 Frame_Shift_Del p.T384Wfs*34 0.13 TCGA-CM-4743-01 9 130211976 130211976 T - RPL12 Frame_Shift_Del p.V42Lfs*15 0.18 TCGA-CM-4743-01 9 130482417 130482417 G A TTC16 Missense_Mutation p.A163T 0.19 tolerated(0.12) benign(0.101) TCGA-CM-4743-01 9 130511596 130511596 C T SH2D3C Missense_Mutation p.V345I 0.28 tolerated(0.39) benign(0.03) TCGA-CM-4743-01 9 130634103 130634103 C A AK1 Missense_Mutation p.R108L 0.25 tolerated(0.06) benign(0.1) TCGA-CM-4743-01 9 131038578 131038578 C T SWI5 Missense_Mutation p.P52S 0.23 tolerated_low_confidence(0.28) benign(0.007) TCGA-CM-4743-01 9 132571647 132571647 G A TOR1B Missense_Mutation p.D266N 0.18 deleterious(0.04) benign(0.109) TCGA-CM-4743-01 9 133780642 133780642 C T FIBCD1 Missense_Mutation p.A369T 0.18 tolerated(0.11) benign(0.03) TCGA-CM-4743-01 9 134351880 134351880 G A PRRC2B Missense_Mutation p.R1455H 0.20 tolerated(0.06) benign(0.052) TCGA-CM-4743-01 9 134379676 134379676 G T POMT1 Missense_Mutation p.G24V 0.19 tolerated(1) benign(0.006) TCGA-CM-4743-01 9 135073821 135073821 C T NTNG2 Missense_Mutation p.R228C 0.23 tolerated(0.06) possibly_damaging(0.83) TCGA-CM-4743-01 9 135275462 135275462 G A TTF1 Silent p.Y517Y 0.21 TCGA-CM-4743-01 9 136641199 136641199 G A VAV2 Missense_Mutation p.P657S 0.20 tolerated(0.38) benign(0.15) TCGA-CM-4743-01 9 138438725 138438725 C A OBP2A Silent p.G58G 0.19 TCGA-CM-4743-01 9 138516135 138516135 G T GLT6D1 Silent p.T213T 0.24 TCGA-CM-4743-01 9 138713114 138713114 C T CAMSAP1 Silent p.P1131P 0.26 TCGA-CM-4743-01 9 139342817 139342819 AGG - SEC16A Intron 0.13 TCGA-CM-4743-01 9 139687282 139687282 T C TMEM141 Nonstop_Mutation p.*109Qext*125 0.09 TCGA-CM-4743-01 9 139907330 139907330 C T ABCA2 Missense_Mutation p.V1639I 0.19 tolerated(0.59) benign(0.013) TCGA-CM-4743-01 9 139908769 139908769 G A ABCA2 Missense_Mutation p.S1364L 0.26 tolerated(0.08) benign(0.396) TCGA-CM-4743-01 9 139911381 139911381 C T ABCA2 Missense_Mutation p.V917M 0.11 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 9 139913175 139913175 A - ABCA2 Frame_Shift_Del p.F605Lfs*4 0.24 TCGA-CM-4743-01 9 140002996 140002996 G A MAN1B1 Missense_Mutation p.V685M 0.27 deleterious(0) probably_damaging(0.997) TCGA-CM-4743-01 9 140057746 140057747 - C GRIN1 Frame_Shift_Ins p.W789Lfs*32 0.29 TCGA-CM-4743-01 9 140094250 140094250 G A TPRN Missense_Mutation p.P305L 0.21 deleterious(0) probably_damaging(0.98) TCGA-CM-4743-01 9 140137897 140137897 C T TUBB4B Silent p.T409T 0.21 TCGA-CM-4743-01 9 140811737 140811737 G A CACNA1B Missense_Mutation p.A274T 0.15 deleterious(0.03) benign(0.218) TCGA-CM-4743-01 9 15846749 15846749 G A CCDC171 Missense_Mutation p.R1106H 0.20 tolerated(0.11) probably_damaging(0.999) TCGA-CM-4743-01 9 16727871 16727871 G A BNC2 Missense_Mutation p.T85M 0.22 tolerated_low_confidence(0.07) benign(0.143) TCGA-CM-4743-01 9 17579219 17579219 C A SH3GL2 5'UTR 0.19 TCGA-CM-4743-01 9 18574131 18574131 A G ADAMTSL1 Missense_Mutation p.D114G 0.21 deleterious(0) benign(0.416) TCGA-CM-4743-01 9 18950934 18950934 G A FAM154A Missense_Mutation p.R14W 0.24 deleterious(0) probably_damaging(0.99) TCGA-CM-4743-01 9 21228079 21228079 G T IFNA17 Missense_Mutation p.L32M 0.25 deleterious(0.01) benign(0.313) TCGA-CM-4743-01 9 32632794 32632794 A - TAF1L Frame_Shift_Del p.F928Lfs*13 0.20 TCGA-CM-4743-01 9 33248459 33248459 G A SPINK4 Missense_Mutation p.G84D 0.25 deleterious(0) probably_damaging(0.995) TCGA-CM-4743-01 9 33468969 33468969 C A NOL6 Missense_Mutation p.R338L 0.26 deleterious(0) probably_damaging(0.996) TCGA-CM-4743-01 9 35057429 35057429 C T VCP Silent p.R753R 0.17 TCGA-CM-4743-01 9 37860107 37860107 G A DCAF10 Missense_Mutation p.G410R 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-CM-4743-01 9 5763677 5763677 C T KIAA1432 Missense_Mutation p.L884F 0.23 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 9 5770159 5770159 A G KIAA1432 Missense_Mutation p.N1166S 0.20 tolerated(1) benign(0) TCGA-CM-4743-01 9 6553491 6553491 C T GLDC Silent p.P778P 0.18 TCGA-CM-4743-01 9 712642 712642 C T KANK1 Missense_Mutation p.R626W 0.20 tolerated(0.06) probably_damaging(0.95) TCGA-CM-4743-01 9 72064650 72064650 T A APBA1 Silent p.G677G 0.20 TCGA-CM-4743-01 9 72459490 72459491 - A C9orf135 Frame_Shift_Ins p.L73Tfs*3 0.12 TCGA-CM-4743-01 9 74360411 74360411 G A TMEM2 Missense_Mutation p.A186V 0.14 tolerated(0.11) possibly_damaging(0.7) TCGA-CM-4743-01 9 74674227 74674227 A G C9orf57 Silent p.A29A 0.17 TCGA-CM-4743-01 9 80537246 80537246 C A GNAQ Missense_Mutation p.G51V 0.20 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 9 80646027 80646027 A C GNAQ Missense_Mutation p.L42R 0.24 deleterious(0) probably_damaging(0.999) TCGA-CM-4743-01 9 8500815 8500815 G T PTPRD Silent p.A689A 0.22 TCGA-CM-4743-01 9 86506253 86506253 A G KIF27 Missense_Mutation p.L589S 0.23 tolerated(0.29) benign(0.022) TCGA-CM-4743-01 9 94172938 94172938 C T NFIL3 Missense_Mutation p.V27I 0.19 deleterious(0.02) benign(0.12) TCGA-CM-4743-01 9 95738723 95738723 C T FGD3 Missense_Mutation p.T62M 0.22 tolerated(0.16) benign(0.008) TCGA-CM-4743-01 9 95738900 95738900 C - FGD3 Frame_Shift_Del p.Q123Rfs*51 0.18 TCGA-CM-4743-01 9 96398693 96398693 T C PHF2 Missense_Mutation p.L62S 0.22 deleterious(0.03) unknown(0) TCGA-CM-4743-01 9 97912272 97912272 G T FANCC Missense_Mutation p.H207N 0.12 deleterious(0.01) possibly_damaging(0.742) TCGA-CM-4743-01 X 100601575 100601575 C T TIMM8A Missense_Mutation p.R69H 0.34 tolerated(0.05) benign(0.172) TCGA-CM-4743-01 X 10085224 10085224 C T WWC3 Silent p.S375S 0.39 TCGA-CM-4743-01 X 101909646 101909646 A G GPRASP1 Missense_Mutation p.T269A 0.37 tolerated(0.17) benign(0.007) TCGA-CM-4743-01 X 101970997 101970997 G T GPRASP2 Missense_Mutation p.E400D 0.47 tolerated(0.1) possibly_damaging(0.468) TCGA-CM-4743-01 X 106228357 106228357 C A MORC4 Missense_Mutation p.G215C 0.44 deleterious(0) probably_damaging(1) TCGA-CM-4743-01 X 107404879 107404879 G A COL4A6 Missense_Mutation p.P1436S 0.05 benign(0.013) TCGA-CM-4743-01 X 120182430 120182430 G A GLUD2 Missense_Mutation p.G298R 0.38 deleterious(0) probably_damaging(0.991) TCGA-CM-4743-01 X 130407818 130407818 A G IGSF1 Silent p.P1326P 0.10 TCGA-CM-4743-01 X 13338087 13338087 C T ATXN3L 5'UTR 0.37 TCGA-CM-4743-01 X 133511691 133511691 G A PHF6 Missense_Mutation p.R15H 0.39 tolerated(0.1) benign(0.003) TCGA-CM-4743-01 X 134033470 134033470 T C MOSPD1 5'UTR 0.33 TCGA-CM-4743-01 X 134948046 134948046 A C CT45A5 Silent p.P93P 0.44 TCGA-CM-4743-01 X 135750120 135750120 G A ARHGEF6 3'UTR 0.48 TCGA-CM-4743-01 X 142718634 142718634 G A SLITRK4 Silent p.N97N 0.38 TCGA-CM-4743-01 X 142968017 142968017 T - UBE2NL 3'UTR 0.33 TCGA-CM-4743-01 X 144906525 144906525 C A SLITRK2 3'UTR 0.46 TCGA-CM-4743-01 X 1460638 1460638 C T IL3RA 5'UTR 0.04 TCGA-CM-4743-01 X 152027419 152027419 A G NSDHL Missense_Mutation p.T125A 0.36 deleterious(0.03) probably_damaging(0.913) TCGA-CM-4743-01 X 152915674 152915674 G - DUSP9 Frame_Shift_Del p.Q359Rfs*77 0.29 TCGA-CM-4743-01 X 153039154 153039154 G - PLXNB3 Frame_Shift_Del p.L1114Cfs*36 0.39 TCGA-CM-4743-01 X 153043582 153043582 G - PLXNB3 Intron 0.39 TCGA-CM-4743-01 X 153209401 153209401 A G RENBP Missense_Mutation p.Y79H 0.43 deleterious(0) probably_damaging(0.928) TCGA-CM-4743-01 X 155254959 155254959 C T WASH6P RNA 0.12 TCGA-CM-4743-01 X 1720035 1720035 G A AKAP17A Missense_Mutation p.V546I 0.19 deleterious_low_confidence(0.05) unknown(0) TCGA-CM-4743-01 X 17746787 17746787 A G NHS Missense_Mutation p.D1393G 0.29 tolerated(0.07) benign(0.101) TCGA-CM-4743-01 X 19026182 19026182 C T GPR64 Silent p.S494S 0.47 TCGA-CM-4743-01 X 19379457 19379457 C T MAP3K15 Missense_Mutation p.R1286Q 0.40 deleterious(0) possibly_damaging(0.87) TCGA-CM-4743-01 X 3235262 3235262 G A MXRA5 Missense_Mutation p.R2154W 0.40 deleterious(0) probably_damaging(0.93) TCGA-CM-4743-01 X 34648297 34648297 A - TMEM47 3'UTR 0.38 TCGA-CM-4743-01 X 34675037 34675037 G A TMEM47 Missense_Mutation p.A37V 0.39 deleterious(0.01) benign(0.44) TCGA-CM-4743-01 X 43572023 43572023 T C MAOA Silent p.I161I 0.43 TCGA-CM-4743-01 X 48678572 48678572 G - HDAC6 Frame_Shift_Del p.G751Afs*16 0.32 TCGA-CM-4743-01 X 48771792 48771792 G T PIM2 Missense_Mutation p.P218T 0.42 deleterious(0) benign(0.33) TCGA-CM-4743-01 X 49076227 49076227 C T CACNA1F Silent p.E814E 0.44 TCGA-CM-4743-01 X 53263449 53263449 G - IQSEC2 Frame_Shift_Del p.S1474Vfs*21 0.33 TCGA-CM-4743-01 X 591693 591693 G A SHOX Missense_Mutation p.G21S 0.22 tolerated_low_confidence(0.73) benign(0.001) TCGA-CM-4743-01 X 63412546 63412546 G A AMER1 Silent p.H207H 0.43 TCGA-CM-4743-01 X 64708999 64708999 G T ZC3H12B Missense_Mutation p.K106N 0.10 deleterious(0.02) possibly_damaging(0.488) TCGA-CM-4743-01 X 65825035 65825035 A G EDA2R Missense_Mutation p.C41R 0.45 tolerated(0.07) benign(0.081) TCGA-CM-4743-01 X 6968177 6968177 G A HDHD1 3'UTR 0.28 TCGA-CM-4743-01 X 6995425 6995425 C T HDHD1 Missense_Mutation p.G139R 0.33 deleterious(0.04) benign(0.038) TCGA-CM-4743-01 X 70072985 70072985 C T TEX11 Missense_Mutation p.V157I 0.36 tolerated(0.24) benign(0.001) TCGA-CM-4743-01 X 70523317 70523317 A G ITGB1BP2 Missense_Mutation p.D140G 0.45 tolerated(0.16) benign(0.001) TCGA-CM-4743-01 X 73964263 73964263 A G KIAA2022 Silent p.A43A 0.44 TCGA-CM-4743-01 X 77913720 77913720 C A ZCCHC5 Missense_Mutation p.E66D 0.40 tolerated(0.07) benign(0.045) TCGA-CM-4743-01 X 83351265 83351265 A G RPS6KA6 Silent p.R636R 0.40 TCGA-CM-4743-01 X 86773264 86773264 G A KLHL4 Missense_Mutation p.R123H 0.26 tolerated_low_confidence(0.34) benign(0.002) TCGA-CM-4743-01 X 86924196 86924196 T C KLHL4 Intron 0.47 TCGA-CM-4744-01 10 117884921 117884921 T C GFRA1 Missense_Mutation p.K194R 0.20 tolerated(0.14) possibly_damaging(0.492) TCGA-CM-4744-01 10 120832524 120832524 C A EIF3A Missense_Mutation p.R140L 0.25 deleterious(0) unknown(0) TCGA-CM-4744-01 10 129901381 129901381 G T MKI67 Missense_Mutation p.P2908H 0.07 tolerated(0.56) probably_damaging(0.979) TCGA-CM-4744-01 10 135113057 135113057 G A TUBGCP2 Silent p.A110A 0.12 TCGA-CM-4744-01 10 20500618 20500618 G A PLXDC2 Missense_Mutation p.R361H 0.22 deleterious(0) probably_damaging(0.984) TCGA-CM-4744-01 10 26562618 26562618 T C GAD2 Silent p.S382S 0.11 TCGA-CM-4744-01 10 373036 373036 C T DIP2C Silent p.S1278S 0.16 TCGA-CM-4744-01 10 55568494 55568494 C A PCDH15 Missense_Mutation p.K706N 0.24 deleterious_low_confidence(0) unknown(0) TCGA-CM-4744-01 10 73576083 73576083 C T PSAP 3'UTR 0.09 TCGA-CM-4744-01 10 75156929 75156929 T C ANXA7 Silent p.P121P 0.35 TCGA-CM-4744-01 10 75871827 75871827 C T VCL Missense_Mutation p.A969V 0.27 deleterious(0.01) benign(0.094) TCGA-CM-4744-01 10 89550146 89550146 C T ATAD1 Silent p.T101T 0.11 TCGA-CM-4744-01 11 123065682 123065682 G A CLMP 5'UTR 0.12 TCGA-CM-4744-01 11 1578713 1578713 C T DUSP8 Missense_Mutation p.A305T 0.38 tolerated(0.18) benign(0.256) TCGA-CM-4744-01 11 17600027 17600027 G A OTOG Missense_Mutation p.V917M 0.43 benign(0.004) TCGA-CM-4744-01 11 55541397 55541397 A C OR5D13 Missense_Mutation p.T162P 0.25 deleterious(0) probably_damaging(0.932) TCGA-CM-4744-01 11 55541398 55541398 C T OR5D13 Missense_Mutation p.T162I 0.25 tolerated(0.09) benign(0.159) TCGA-CM-4744-01 11 57077476 57077476 G A TNKS1BP1 Silent p.N903N 0.16 TCGA-CM-4744-01 11 61511877 61511877 G A DAGLA Silent p.A1015A 0.54 TCGA-CM-4744-01 11 61564696 61564696 A G FEN1 3'UTR 0.31 TCGA-CM-4744-01 11 64603609 64603609 C A CDC42BPG Missense_Mutation p.A550S 0.20 tolerated(0.27) benign(0.043) TCGA-CM-4744-01 11 70194329 70194329 C T PPFIA1 Missense_Mutation p.R656W 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-CM-4744-01 11 70333647 70333647 G A SHANK2 Silent p.Y918Y 0.06 TCGA-CM-4744-01 11 73760534 73760534 C T C2CD3 Missense_Mutation p.G1737S 0.11 deleterious(0) probably_damaging(0.999) TCGA-CM-4744-01 11 8414138 8414138 G T STK33 Silent p.T488T 0.43 TCGA-CM-4744-01 12 113624661 113624662 CT - RITA1 Frame_Shift_Del p.L38Vfs*23 0.23 TCGA-CM-4744-01 12 120984397 120984397 G A RNF10 Missense_Mutation p.R116Q 0.54 deleterious(0.01) probably_damaging(0.957) TCGA-CM-4744-01 12 124352076 124352076 A C DNAH10 Silent p.I2292I 0.11 TCGA-CM-4744-01 12 132547121 132547122 - AGC EP400 In_Frame_Ins p.Q2748dup 0.22 TCGA-CM-4744-01 12 133295519 133295519 G A PGAM5 Intron 0.21 TCGA-CM-4744-01 12 15035144 15035144 G A MGP Missense_Mutation p.R106C 0.20 tolerated(0.17) probably_damaging(0.978) TCGA-CM-4744-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.62 deleterious(0.03) possibly_damaging(0.644) TCGA-CM-4744-01 12 27543095 27543096 - T ARNTL2 Frame_Shift_Ins p.C284Lfs*7 0.16 TCGA-CM-4744-01 12 40728889 40728889 C A LRRK2 Missense_Mutation p.Q1960K 0.44 tolerated(0.12) possibly_damaging(0.559) TCGA-CM-4744-01 12 53298536 53298536 A C KRT8 Missense_Mutation p.V105G 0.24 deleterious(0.02) benign(0.001) TCGA-CM-4744-01 12 53342937 53342937 C T KRT18 5'UTR 0.22 TCGA-CM-4744-01 12 55423308 55423308 C T NEUROD4 3'UTR 0.47 TCGA-CM-4744-01 13 103385592 103385592 A T CCDC168 Missense_Mutation p.W1190R 0.40 tolerated(0.38) unknown(0) TCGA-CM-4744-01 13 108518551 108518551 G T FAM155A Missense_Mutation p.P132T 0.25 tolerated_low_confidence(0.2) probably_damaging(0.998) TCGA-CM-4744-01 13 108861289 108861289 T A LIG4 Missense_Mutation p.E776D 0.23 tolerated(0.18) benign(0.003) TCGA-CM-4744-01 13 19751712 19751712 G A TUBA3C Silent p.I137I 0.18 TCGA-CM-4744-01 13 36429723 36429723 A G DCLK1 Intron 0.10 TCGA-CM-4744-01 14 105926742 105926742 G A MTA1 Missense_Mutation p.R234Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-CM-4744-01 14 47770727 47770727 A G MDGA2 Missense_Mutation p.S103P 0.10 tolerated(0.06) benign(0.022) TCGA-CM-4744-01 14 60194011 60194011 C T RTN1 Missense_Mutation p.S464N 0.19 deleterious(0) probably_damaging(0.958) TCGA-CM-4744-01 14 93649516 93649516 C T MOAP1 3'UTR 0.22 TCGA-CM-4744-01 15 34536214 34536214 C T SLC12A6 Missense_Mutation p.R668Q 0.56 deleterious(0.03) possibly_damaging(0.686) TCGA-CM-4744-01 15 43762168 43762168 G - TP53BP1 Frame_Shift_Del p.P426Lfs*65 0.13 TCGA-CM-4744-01 15 44028333 44028333 G T RNU6-354P 5'Flank 0.21 TCGA-CM-4744-01 15 49160042 49160042 C T SHC4 Missense_Mutation p.V307I 0.10 deleterious(0) possibly_damaging(0.657) TCGA-CM-4744-01 15 73994896 73994896 G A CD276 Missense_Mutation p.R127Q 0.24 tolerated(1) benign(0.003) TCGA-CM-4744-01 15 74425513 74425513 C T ISLR2 Missense_Mutation p.R140W 0.13 deleterious(0) possibly_damaging(0.861) TCGA-CM-4744-01 15 79356806 79356806 G A RASGRF1 Silent p.D113D 0.20 TCGA-CM-4744-01 16 21030988 21030988 T G DNAH3 Missense_Mutation p.K1994Q 0.06 tolerated(0.12) benign(0.2) TCGA-CM-4744-01 16 23226434 23226434 G A SCNN1G Missense_Mutation p.G532S 0.05 deleterious(0.01) probably_damaging(1) TCGA-CM-4744-01 16 31391180 31391180 C T ITGAX Missense_Mutation p.P991S 0.39 tolerated(0.59) benign(0.007) TCGA-CM-4744-01 16 318716 318716 C G RGS11 3'UTR 0.23 TCGA-CM-4744-01 16 34712947 34712947 A T RP11-80F22.9 RNA 0.33 TCGA-CM-4744-01 16 4557823 4557823 G A HMOX2 Missense_Mutation p.R105Q 0.05 deleterious(0.03) probably_damaging(0.919) TCGA-CM-4744-01 16 50745138 50745138 G A NOD2 Missense_Mutation p.R439H 0.31 deleterious(0.04) benign(0.036) TCGA-CM-4744-01 17 2597472 2597472 G - CLUH Frame_Shift_Del p.K974Rfs*21 0.22 TCGA-CM-4744-01 17 31355277 31355277 C T ASIC2 Missense_Mutation p.R374H 0.32 deleterious(0.01) probably_damaging(0.914) TCGA-CM-4744-01 17 40452285 40452285 C T STAT5A Silent p.D273D 0.25 TCGA-CM-4744-01 17 40970815 40970815 C T BECN1 Missense_Mutation p.R114Q 0.10 tolerated(0.69) benign(0.022) TCGA-CM-4744-01 17 43213383 43213383 G T ACBD4 Intron 0.36 TCGA-CM-4744-01 17 62025347 62025347 T C SCN4A Missense_Mutation p.Y1074C 0.44 deleterious(0.02) probably_damaging(0.994) TCGA-CM-4744-01 17 62238258 62238259 - C TEX2 Frame_Shift_Ins p.S910Vfs*17 0.14 TCGA-CM-4744-01 17 70119869 70119870 - TCAA SOX9 Frame_Shift_Ins p.E293Qfs*4 0.51 TCGA-CM-4744-01 17 7700731 7700731 C T DNAH2 Missense_Mutation p.R2655W 0.27 probably_damaging(1) TCGA-CM-4744-01 17 79108223 79108223 A C AATK Missense_Mutation p.V45G 0.36 deleterious(0.02) possibly_damaging(0.696) TCGA-CM-4744-01 18 24436346 24436346 G T AQP4 Missense_Mutation p.S267R 0.30 tolerated(0.28) benign(0.019) TCGA-CM-4744-01 18 24722928 24722928 C T CHST9 Intron 0.25 TCGA-CM-4744-01 18 29412059 29412059 T C TRAPPC8 Missense_Mutation p.H1354R 0.12 tolerated(0.07) possibly_damaging(0.475) TCGA-CM-4744-01 18 30795551 30795551 C A CCDC178 Nonsense_Mutation p.E681* 0.50 TCGA-CM-4744-01 18 44593429 44593429 A G KATNAL2 Missense_Mutation p.D183G 0.49 deleterious(0) probably_damaging(0.985) TCGA-CM-4744-01 18 48255906 48255906 C T MAPK4 Silent p.R482R 0.35 TCGA-CM-4744-01 18 53254287 53254287 C A TCF4 Missense_Mutation p.D123Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-CM-4744-01 19 14000592 14000592 G A C19orf57 Silent p.P359P 0.18 TCGA-CM-4744-01 19 18377747 18377747 G A KIAA1683 Silent p.V201V 0.11 TCGA-CM-4744-01 19 375860 375860 G A THEG Silent p.Y37Y 0.35 TCGA-CM-4744-01 19 40398372 40398372 C T FCGBP Missense_Mutation p.V2199M 0.26 possibly_damaging(0.867) TCGA-CM-4744-01 19 4055203 4055203 C T ZBTB7A Missense_Mutation p.G10R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CM-4744-01 19 40882544 40882544 C T PLD3 Missense_Mutation p.R350W 0.13 deleterious(0) probably_damaging(1) TCGA-CM-4744-01 19 40904314 40904314 C T PRX Intron 0.27 TCGA-CM-4744-01 19 45992652 45992652 C T RTN2 Missense_Mutation p.R398H 0.14 tolerated(0.17) benign(0.055) TCGA-CM-4744-01 19 46216376 46216376 G A FBXO46 Silent p.S126S 0.48 TCGA-CM-4744-01 19 47960373 47960373 G A SLC8A2 Missense_Mutation p.A385V 0.50 tolerated(0.34) benign(0.065) TCGA-CM-4744-01 19 48988944 48988944 G A LMTK3 3'UTR 0.25 TCGA-CM-4744-01 19 50185289 50185289 T C PRMT1 Silent p.F105F 0.46 TCGA-CM-4744-01 19 50308751 50308751 G A AP2A1 Missense_Mutation p.G818S 0.09 tolerated(0.34) probably_damaging(0.959) TCGA-CM-4744-01 19 53995927 53995927 C A ZNF813 3'UTR 0.23 TCGA-CM-4744-01 19 55815972 55815972 C T BRSK1 Silent p.G467G 0.55 TCGA-CM-4744-01 19 57134062 57134062 C T ZNF71 Silent p.G469G 0.33 TCGA-CM-4744-01 19 58049505 58049505 G A ZNF549 Missense_Mutation p.R378Q 0.21 tolerated(0.4) benign(0.064) TCGA-CM-4744-01 19 8139986 8139986 G A FBN3 Silent p.F2557F 0.18 TCGA-CM-4744-01 1 109377660 109377660 C T AKNAD1 Missense_Mutation p.G519S 0.21 tolerated(0.44) benign(0.044) TCGA-CM-4744-01 1 115141944 115141944 C A DENND2C Missense_Mutation p.G745V 0.22 deleterious(0) probably_damaging(1) TCGA-CM-4744-01 1 12438494 12438494 C T VPS13D Missense_Mutation p.R3644C 0.29 probably_damaging(0.965) TCGA-CM-4744-01 1 153279681 153279681 G T PGLYRP3 Missense_Mutation p.L40M 0.27 tolerated(0.05) probably_damaging(0.941) TCGA-CM-4744-01 1 153634890 153634890 G T ILF2 Missense_Mutation p.S385R 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-CM-4744-01 1 158548834 158548834 G C OR10X1 Missense_Mutation p.L286V 0.18 deleterious(0.03) benign(0.075) TCGA-CM-4744-01 1 159897239 159897239 G A IGSF9 Missense_Mutation p.R1146W 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-4744-01 1 176681024 176681024 G A PAPPA2 Nonsense_Mutation p.W1235* 0.12 TCGA-CM-4744-01 1 201294249 201294249 G A PKP1 Missense_Mutation p.R693Q 0.20 tolerated(0.1) probably_damaging(0.923) TCGA-CM-4744-01 1 211469039 211469039 A G RCOR3 Missense_Mutation p.N321D 0.08 deleterious(0.01) possibly_damaging(0.578) TCGA-CM-4744-01 1 229653840 229653845 GTTTAT - ABCB10 3'UTR 0.37 TCGA-CM-4744-01 1 231057184 231057185 TC - TTC13 Frame_Shift_Del p.R627Nfs*8 0.14 TCGA-CM-4744-01 1 233497811 233497811 C T MLK4 Missense_Mutation p.R442W 0.30 tolerated(0.33) possibly_damaging(0.769) TCGA-CM-4744-01 1 247582251 247582251 T C NLRP3 Missense_Mutation p.V52A 0.10 deleterious(0.01) possibly_damaging(0.577) TCGA-CM-4744-01 1 248129613 248129613 G T OR2AK2 Missense_Mutation p.R327I 0.17 deleterious(0.02) benign(0.019) TCGA-CM-4744-01 1 3102870 3102870 C T PRDM16 Silent p.Y73Y 0.29 TCGA-CM-4744-01 1 34180220 34180220 G A CSMD2 Missense_Mutation p.R1085C 0.20 deleterious(0) probably_damaging(0.996) TCGA-CM-4744-01 1 47138582 47138582 T A TEX38 Nonsense_Mutation p.C25* 0.09 TCGA-CM-4744-01 1 55077376 55077376 C T FAM151A Silent p.S281S 0.55 TCGA-CM-4744-01 1 762829 762829 G A LINC00115 RNA 0.27 TCGA-CM-4744-01 1 79102816 79102816 A G IFI44L Missense_Mutation p.N326D 0.25 deleterious(0.01) possibly_damaging(0.841) TCGA-CM-4744-01 1 89473260 89473260 G T GBP3 3'UTR 0.20 TCGA-CM-4744-01 1 94344739 94344739 T C DNTTIP2 5'UTR 0.09 TCGA-CM-4744-01 1 9784139 9784139 G A PIK3CD Missense_Mutation p.E903K 0.27 tolerated(0.96) probably_damaging(0.98) TCGA-CM-4744-01 20 30486296 30486296 G T TTLL9 Missense_Mutation p.R45L 0.09 deleterious(0) possibly_damaging(0.498) TCGA-CM-4744-01 20 3214750 3214750 C T SLC4A11 Missense_Mutation p.G211R 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-CM-4744-01 20 36031159 36031159 A G SRC Silent p.K426K 0.10 TCGA-CM-4744-01 21 33982205 33982205 C T AP000275.65 Missense_Mutation p.V84I 0.21 tolerated(0.52) benign(0.014) TCGA-CM-4744-01 21 44521492 44521492 C T U2AF1 Intron 0.38 TCGA-CM-4744-01 22 18650096 18650096 C A USP18 Missense_Mutation p.H159N 0.25 tolerated(0.13) benign(0.005) TCGA-CM-4744-01 22 24219350 24219350 C T AP000350.10 Silent p.V141V 0.28 TCGA-CM-4744-01 22 42154393 42154393 T G MEI1 Missense_Mutation p.L659R 0.48 deleterious(0) probably_damaging(0.998) TCGA-CM-4744-01 22 50555694 50555694 G A MOV10L1 Silent p.A456A 0.43 TCGA-CM-4744-01 2 109352635 109352635 G T RANBP2 Missense_Mutation p.A238S 0.22 deleterious(0) benign(0.032) TCGA-CM-4744-01 2 109352677 109352677 G T RANBP2 Missense_Mutation p.V252L 0.22 tolerated(0.09) benign(0.001) TCGA-CM-4744-01 2 130912736 130912736 G A SMPD4 Silent p.H501H 0.26 TCGA-CM-4744-01 2 138169290 138169290 A G THSD7B Missense_Mutation p.D936G 0.14 deleterious(0.02) possibly_damaging(0.728) TCGA-CM-4744-01 2 144461002 144461002 A G ARHGAP15 Missense_Mutation p.N385D 0.09 tolerated(0.39) benign(0) TCGA-CM-4744-01 2 164466828 164466828 G A FIGN Missense_Mutation p.P505L 0.21 deleterious(0) probably_damaging(1) TCGA-CM-4744-01 2 166900218 166900218 C A SCN1A Silent p.L668L 0.24 TCGA-CM-4744-01 2 183790323 183790323 T A NCKAP1 3'UTR 0.38 TCGA-CM-4744-01 2 200797679 200797679 G A TYW5 3'UTR 0.25 TCGA-CM-4744-01 2 226446792 226446792 C T NYAP2 Missense_Mutation p.T220M 0.16 tolerated(0.13) possibly_damaging(0.498) TCGA-CM-4744-01 2 235943637 235943637 G A SH3BP4 5'UTR 0.20 TCGA-CM-4744-01 2 24362283 24362283 C T FAM228B Missense_Mutation p.P135L 0.04 deleterious(0) probably_damaging(0.998) TCGA-CM-4744-01 2 51254922 51254922 C T NRXN1 Missense_Mutation p.A164T 0.24 tolerated(0.74) benign(0.025) TCGA-CM-4744-01 2 55555469 55555469 G C CCDC88A Silent p.S985S 0.38 TCGA-CM-4744-01 2 5833292 5833292 G A SOX11 Missense_Mutation p.G147S 0.50 tolerated(0.37) benign(0) TCGA-CM-4744-01 2 72960200 72960200 T A EXOC6B Missense_Mutation p.E109D 0.18 tolerated(0.25) benign(0.004) TCGA-CM-4744-01 2 89975704 89975704 A C IGKV2D-30 Translation_Start_Site p.M1? 0.16 deleterious(0.02) possibly_damaging(0.876) TCGA-CM-4744-01 2 90249197 90249197 T G IGKV1D-43 Missense_Mutation p.I51M 0.05 deleterious(0) possibly_damaging(0.886) TCGA-CM-4744-01 3 115560699 115560699 G T LSAMP Silent p.V304V 0.51 TCGA-CM-4744-01 3 121258403 121258403 C T POLQ Missense_Mutation p.G170S 0.07 deleterious(0) probably_damaging(0.99) TCGA-CM-4744-01 3 121412740 121412740 T A GOLGB1 Silent p.I2210I 0.11 TCGA-CM-4744-01 3 14770059 14770059 G T C3orf20 Nonsense_Mutation p.E602* 0.27 TCGA-CM-4744-01 3 148459240 148459240 C T AGTR1 Missense_Mutation p.R140C 0.19 deleterious(0) probably_damaging(1) TCGA-CM-4744-01 3 150804659 150804659 A T MED12L 5'Flank 0.09 TCGA-CM-4744-01 3 19384132 19384132 C T KCNH8 Missense_Mutation p.R166W 0.34 deleterious(0) probably_damaging(0.991) TCGA-CM-4744-01 3 196387318 196387318 G A NRROS Silent p.L268L 0.27 TCGA-CM-4744-01 3 49690829 49690829 T G BSN Missense_Mutation p.F1280L 0.27 unknown(0) TCGA-CM-4744-01 3 52548396 52548396 C T STAB1 Missense_Mutation p.R1188W 0.44 deleterious(0) probably_damaging(0.932) TCGA-CM-4744-01 3 62355902 62355902 G A FEZF2 Silent p.N412N 0.07 TCGA-CM-4744-01 3 98251733 98251733 G A GPR15 Missense_Mutation p.V286M 0.17 deleterious(0) probably_damaging(0.978) TCGA-CM-4744-01 4 119660440 119660440 A G SEC24D Silent p.C747C 0.09 TCGA-CM-4744-01 4 144474391 144474391 G A SMARCA5 3'UTR 0.46 TCGA-CM-4744-01 4 153249518 153249519 - TGTCCCAC FBXW7 Frame_Shift_Ins p.H420Qfs*13 0.36 TCGA-CM-4744-01 4 1985175 1985175 C T NELFA Silent p.T497T 0.56 TCGA-CM-4744-01 4 41984544 41984544 C T DCAF4L1 Silent p.S245S 0.25 TCGA-CM-4744-01 4 46053632 46053632 T C GABRG1 Missense_Mutation p.T314A 0.41 deleterious(0.04) probably_damaging(0.992) TCGA-CM-4744-01 4 7056504 7056504 G A TADA2B Missense_Mutation p.R329Q 0.33 tolerated(0.37) benign(0.068) TCGA-CM-4744-01 4 88996075 88996075 G A PKD2 Silent p.R878R 0.20 TCGA-CM-4744-01 4 96470113 96470113 C T UNC5C 5'UTR 0.61 TCGA-CM-4744-01 5 112175720 112175720 C T APC Nonsense_Mutation p.Q1477* 0.57 TCGA-CM-4744-01 5 137241903 137241903 C A PKD2L2 Missense_Mutation p.A252E 0.10 deleterious(0) probably_damaging(0.962) TCGA-CM-4744-01 5 140870973 140870973 C T PCDHGC5 Silent p.D722D 0.17 TCGA-CM-4744-01 5 178392606 178392606 C T ZNF454 Nonsense_Mutation p.R401* 0.15 TCGA-CM-4744-01 5 31468129 31468129 C A DROSHA Missense_Mutation p.Q761H 0.63 deleterious(0.02) possibly_damaging(0.827) TCGA-CM-4744-01 5 38884201 38884201 C - OSMR Frame_Shift_Del p.L231Ffs*68 0.16 TCGA-CM-4744-01 5 63257077 63257077 A T HTR1A Missense_Mutation p.I157N 0.06 deleterious(0) probably_damaging(1) TCGA-CM-4744-01 5 63496723 63496723 C A RNF180 Missense_Mutation p.A30E 0.18 deleterious(0.03) possibly_damaging(0.857) TCGA-CM-4744-01 6 109775377 109775377 T C MICAL1 Missense_Mutation p.N8S 0.12 deleterious(0.02) possibly_damaging(0.591) TCGA-CM-4744-01 6 143092673 143092673 G A HIVEP2 Missense_Mutation p.T1068M 0.45 deleterious(0.01) benign(0.366) TCGA-CM-4744-01 6 157528105 157528105 C T ARID1B Nonsense_Mutation p.R1944* 0.14 TCGA-CM-4744-01 6 159654416 159654416 G A FNDC1 Missense_Mutation p.A958T 0.41 tolerated_low_confidence(0.31) unknown(0) TCGA-CM-4744-01 6 33232604 33232604 C T VPS52 Missense_Mutation p.R452Q 0.08 deleterious(0.03) possibly_damaging(0.782) TCGA-CM-4744-01 6 35213136 35213136 G A SCUBE3 Missense_Mutation p.V845M 0.35 deleterious(0) probably_damaging(0.999) TCGA-CM-4744-01 6 35479435 35479435 G A TULP1 Silent p.D113D 0.44 TCGA-CM-4744-01 6 555983 555985 CCT - EXOC2 In_Frame_Del p.E654del 0.24 TCGA-CM-4744-01 6 76623837 76623837 G T MYO6 Missense_Mutation p.R1166L 0.24 tolerated(0.07) possibly_damaging(0.74) TCGA-CM-4744-01 6 96652059 96652059 G T FUT9 Missense_Mutation p.R343M 0.07 deleterious(0.01) probably_damaging(0.957) TCGA-CM-4744-01 6 96997431 96997431 A G UFL1 Missense_Mutation p.E555G 0.26 tolerated(0.06) possibly_damaging(0.889) TCGA-CM-4744-01 7 100175317 100175317 G A LRCH4 Silent p.P362P 0.56 TCGA-CM-4744-01 7 111982731 111982731 T G ZNF277 Missense_Mutation p.S434A 0.20 tolerated(0.18) benign(0.003) TCGA-CM-4744-01 7 122342671 122342671 G A RNF148 Missense_Mutation p.T45I 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-CM-4744-01 7 130007797 130007797 C T CPA5 Silent p.I363I 0.46 TCGA-CM-4744-01 7 151065858 151065858 C A NUB1 Nonsense_Mutation p.S402* 0.22 TCGA-CM-4744-01 7 19156561 19156561 G A TWIST1 Silent p.F128F 0.18 TCGA-CM-4744-01 7 20371449 20371450 - T ITGB8 Frame_Shift_Ins p.T10Yfs*34 0.15 TCGA-CM-4744-01 7 25218816 25218816 G A C7orf31 Missense_Mutation p.R38C 0.05 tolerated(0.06) probably_damaging(0.963) TCGA-CM-4744-01 7 92734353 92734353 G A SAMD9 Missense_Mutation p.T353M 0.30 tolerated(0.33) benign(0.002) TCGA-CM-4744-01 8 116426762 116426762 C T TRPS1 Missense_Mutation p.R1125Q 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CM-4744-01 8 20072363 20072363 G A ATP6V1B2 Missense_Mutation p.R321Q 0.12 deleterious(0.04) benign(0.292) TCGA-CM-4744-01 8 56015714 56015714 C A XKR4 Missense_Mutation p.S222R 0.27 tolerated(0.17) benign(0.196) TCGA-CM-4744-01 8 73848482 73848482 C T KCNB2 Missense_Mutation p.R298C 0.12 deleterious(0) probably_damaging(1) TCGA-CM-4744-01 9 130605416 130605416 T A ENG Missense_Mutation p.N59I 0.23 deleterious(0.01) possibly_damaging(0.905) TCGA-CM-4744-01 9 131388112 131388112 A G SPTAN1 Missense_Mutation p.K2045R 0.31 deleterious(0.03) probably_damaging(0.987) TCGA-CM-4744-01 9 131587115 131587115 G A C9orf114 Missense_Mutation p.S249L 0.51 deleterious(0.04) benign(0.23) TCGA-CM-4744-01 9 135145030 135145030 A C SETX Missense_Mutation p.F2420C 0.13 deleterious(0) probably_damaging(0.974) TCGA-CM-4744-01 9 140459010 140459010 C T DPH7 Silent p.P275P 0.26 TCGA-CM-4744-01 9 16436137 16436137 G T BNC2 Silent p.G685G 0.25 TCGA-CM-4744-01 9 79635769 79635769 C T FOXB2 Missense_Mutation p.A400V 0.19 tolerated_low_confidence(0.12) benign(0.029) TCGA-CM-4744-01 9 86590507 86590507 C T HNRNPK Intron 0.46 TCGA-CM-4744-01 X 10174583 10174583 G T CLCN4 Missense_Mutation p.K247N 0.11 tolerated(0.16) benign(0.008) TCGA-CM-4744-01 X 101971767 101971768 - T GPRASP2 Frame_Shift_Ins p.L659Ffs*18 0.22 TCGA-CM-4744-01 X 140786535 140786535 C A SPANXD Missense_Mutation p.V10L 0.06 tolerated_low_confidence(0.48) benign(0.005) TCGA-CM-4744-01 X 151815584 151815584 G A GABRQ Missense_Mutation p.R161H 0.69 deleterious(0) probably_damaging(0.991) TCGA-CM-4744-01 X 153175663 153175663 G A ARHGAP4 Silent p.Y746Y 0.74 TCGA-CM-4744-01 X 63411678 63411678 G A AMER1 Nonsense_Mutation p.R497* 0.66 TCGA-CM-4744-01 X 72433259 72433259 G C NAP1L2 Missense_Mutation p.T357R 0.20 deleterious(0.01) benign(0.435) TCGA-CM-4744-01 X 90691444 90691444 C T PABPC5 Missense_Mutation p.R290W 0.70 deleterious(0) possibly_damaging(0.889) TCGA-CM-4746-01 10 102762413 102762413 G A LZTS2 Missense_Mutation p.G40R 0.48 tolerated(0.11) benign(0.34) TCGA-CM-4746-01 10 102762505 102762505 G T LZTS2 Missense_Mutation p.Q70H 0.50 deleterious(0.01) possibly_damaging(0.85) TCGA-CM-4746-01 10 103751749 103751749 C T C10orf76 Missense_Mutation p.R441H 0.44 deleterious(0.01) probably_damaging(0.978) TCGA-CM-4746-01 10 103900396 103900396 G A PPRC1 Missense_Mutation p.V711M 0.46 deleterious_low_confidence(0.01) benign(0.01) TCGA-CM-4746-01 10 103919008 103919008 C T NOLC1 Silent p.S222S 0.58 TCGA-CM-4746-01 10 103986386 103986386 G A ELOVL3 Silent p.R27R 0.28 TCGA-CM-4746-01 10 105177547 105177547 A G PDCD11 Splice_Site p.X591_splice 0.33 TCGA-CM-4746-01 10 105209670 105209670 C T CALHM2 Missense_Mutation p.R10H 0.48 deleterious_low_confidence(0.01) probably_damaging(0.909) TCGA-CM-4746-01 10 105218348 105218348 G A CALHM1 Missense_Mutation p.A54V 0.44 deleterious(0.02) benign(0.002) TCGA-CM-4746-01 10 115664687 115664687 G A NHLRC2 Missense_Mutation p.V606M 0.42 tolerated(0.07) benign(0.028) TCGA-CM-4746-01 10 116049124 116049124 C T VWA2 Silent p.G666G 0.10 TCGA-CM-4746-01 10 116606433 116606433 C A FAM160B1 Missense_Mutation p.P505H 0.23 deleterious(0) possibly_damaging(0.73) TCGA-CM-4746-01 10 120801851 120801851 G A EIF3A Missense_Mutation p.R1061C 0.42 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CM-4746-01 10 124399573 124399573 C T DMBT1 Silent p.I2191I 0.39 TCGA-CM-4746-01 10 127520101 127520101 C A BCCIP Missense_Mutation p.P175H 0.45 tolerated(0.16) benign(0.017) TCGA-CM-4746-01 10 128193320 128193320 G - C10orf90 Frame_Shift_Del p.P150Qfs*58 0.37 TCGA-CM-4746-01 10 128193333 128193333 G A C10orf90 Missense_Mutation p.R146C 0.31 deleterious(0) probably_damaging(0.982) TCGA-CM-4746-01 10 129231583 129231583 C G DOCK1 Missense_Mutation p.R1630G 0.34 tolerated(0.61) possibly_damaging(0.465) TCGA-CM-4746-01 10 133757510 133757510 G A PPP2R2D Silent p.A141A 0.42 TCGA-CM-4746-01 10 134598363 134598363 C A NKX6-2 3'UTR 0.31 TCGA-CM-4746-01 10 134698659 134698659 G A TTC40 Missense_Mutation p.P1192L 0.47 deleterious(0.03) benign(0.035) TCGA-CM-4746-01 10 15103848 15103848 T - OLAH Frame_Shift_Del p.F151Lfs*15 0.29 TCGA-CM-4746-01 10 16806457 16806457 A - RSU1 Frame_Shift_Del p.F71Lfs*21 0.26 TCGA-CM-4746-01 10 22094952 22094952 C T DNAJC1 Missense_Mutation p.R352Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 10 25464288 25464288 G A GPR158 5'UTR 0.40 TCGA-CM-4746-01 10 28897225 28897233 CCTGTTTCT - WAC In_Frame_Del p.S346_V348del 0.49 TCGA-CM-4746-01 10 44112903 44112904 TG - ZNF485 3'UTR 0.57 TCGA-CM-4746-01 10 48370833 48370833 G A ZNF488 Missense_Mutation p.A101T 0.27 tolerated(0.13) benign(0.24) TCGA-CM-4746-01 10 5805197 5805197 T C FAM208B 3'UTR 0.48 TCGA-CM-4746-01 10 6139040 6139040 C T RBM17 Silent p.Y4Y 0.33 TCGA-CM-4746-01 10 6472783 6472783 G A PRKCQ Missense_Mutation p.R652W 0.31 deleterious(0) possibly_damaging(0.682) TCGA-CM-4746-01 10 70192159 70192159 C T DNA2 Silent p.T671T 0.42 TCGA-CM-4746-01 10 71265993 71265993 C T TSPAN15 Silent p.P244P 0.35 TCGA-CM-4746-01 10 73047362 73047362 C T UNC5B Silent p.G247G 0.21 TCGA-CM-4746-01 10 75676354 75676354 G A PLAU 3'UTR 0.33 TCGA-CM-4746-01 10 81056152 81056152 C T ZMIZ1 Intron 0.40 TCGA-CM-4746-01 10 82369293 82369293 C - SH2D4B Frame_Shift_Del p.W326Gfs*34 0.23 TCGA-CM-4746-01 10 95347180 95347180 G A FFAR4 Silent p.P316P 0.35 TCGA-CM-4746-01 10 99130026 99130026 G A RRP12 Silent p.L899L 0.32 TCGA-CM-4746-01 11 101833647 101833648 - A KIAA1377 Frame_Shift_Ins p.L630Tfs*5 0.31 TCGA-CM-4746-01 11 102593297 102593297 A - MMP8 Frame_Shift_Del p.F70Lfs*3 0.28 TCGA-CM-4746-01 11 109294696 109294696 G - C11orf87 Frame_Shift_Del p.L115Cfs*162 0.42 TCGA-CM-4746-01 11 109295940 109295940 T - C11orf87 3'UTR 0.27 TCGA-CM-4746-01 11 111753212 111753212 C T C11orf1 Nonsense_Mutation p.R56* 0.48 TCGA-CM-4746-01 11 1161307 1161307 G T MUC5AC Silent p.L494L 0.48 TCGA-CM-4746-01 11 117303144 117303144 G A DSCAML1 Silent p.G1761G 0.40 TCGA-CM-4746-01 11 117710617 117710617 G A FXYD6 Intron 0.44 TCGA-CM-4746-01 11 118770036 118770036 C - BCL9L Frame_Shift_Del p.P1198Lfs*5 0.26 TCGA-CM-4746-01 11 122830026 122830026 A - C11orf63 Frame_Shift_Del p.N739Ifs*55 0.11 TCGA-CM-4746-01 11 124507052 124507052 A G SIAE Missense_Mutation p.M456T 0.38 deleterious(0.01) benign(0.101) TCGA-CM-4746-01 11 124751209 124751209 C - ROBO3 3'UTR 0.28 TCGA-CM-4746-01 11 126079437 126079437 C T RPUSD4 Missense_Mutation p.R179H 0.44 tolerated(0.18) benign(0.072) TCGA-CM-4746-01 11 1264277 1264277 C A MUC5B Missense_Mutation p.T2056N 0.14 unknown(0) TCGA-CM-4746-01 11 129814886 129814886 G A PRDM10 Missense_Mutation p.A181V 0.36 tolerated(0.38) probably_damaging(0.994) TCGA-CM-4746-01 11 1298380 1298380 C A TOLLIP Missense_Mutation p.Q238H 0.39 tolerated(0.14) benign(0.128) TCGA-CM-4746-01 11 130130982 130130982 C T ZBTB44 Missense_Mutation p.G263S 0.39 tolerated(1) benign(0.006) TCGA-CM-4746-01 11 134254021 134254021 C T B3GAT1 Silent p.T58T 0.40 TCGA-CM-4746-01 11 17547985 17547985 C T USH1C Missense_Mutation p.V195M 0.25 tolerated(0.08) benign(0.116) TCGA-CM-4746-01 11 1756644 1756644 G C IFITM10 Missense_Mutation p.L185V 0.38 tolerated(0.2) benign(0.22) TCGA-CM-4746-01 11 17757918 17757918 C T KCNC1 Silent p.G123G 0.39 TCGA-CM-4746-01 11 17758069 17758069 C T KCNC1 Missense_Mutation p.P174S 0.44 deleterious(0.05) benign(0.034) TCGA-CM-4746-01 11 18725855 18725855 G A TMEM86A 3'UTR 0.38 TCGA-CM-4746-01 11 18737258 18737258 G T IGSF22 Missense_Mutation p.P418T 0.48 deleterious(0) benign(0.372) TCGA-CM-4746-01 11 218904 218904 G A SIRT3 Silent p.G369G 0.31 TCGA-CM-4746-01 11 22279257 22279257 G A ANO5 Missense_Mutation p.R455H 0.47 deleterious(0.02) benign(0.025) TCGA-CM-4746-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.34 TCGA-CM-4746-01 11 32624013 32624013 A - EIF3M 3'UTR 0.24 TCGA-CM-4746-01 11 34097909 34097909 C T CAPRIN1 Missense_Mutation p.R165W 0.37 deleterious(0) probably_damaging(0.984) TCGA-CM-4746-01 11 36597063 36597063 C T RAG1 Missense_Mutation p.R737C 0.46 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CM-4746-01 11 4107737 4107737 G A STIM1 Missense_Mutation p.R502H 0.42 deleterious(0) probably_damaging(0.987) TCGA-CM-4746-01 11 4510479 4510479 C T OR52K1 Silent p.L117L 0.40 TCGA-CM-4746-01 11 45671764 45671764 C T CHST1 Missense_Mutation p.R237H 0.50 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 11 47308066 47308066 G A MADD Silent p.T878T 0.37 TCGA-CM-4746-01 11 47603690 47603690 G C NDUFS3 Missense_Mutation p.K144N 0.09 deleterious(0) probably_damaging(0.984) TCGA-CM-4746-01 11 47605891 47605891 G A NDUFS3 Missense_Mutation p.R218Q 0.28 deleterious(0) probably_damaging(0.989) TCGA-CM-4746-01 11 49190811 49190811 C T FOLH1 Splice_Site p.X437_splice 0.31 TCGA-CM-4746-01 11 55606348 55606348 G T OR5D16 Missense_Mutation p.V41L 0.36 tolerated(0.16) benign(0.034) TCGA-CM-4746-01 11 55999742 55999742 G A OR5T2 Missense_Mutation p.S307L 0.50 tolerated(1) benign(0.001) TCGA-CM-4746-01 11 60971603 60971603 C A PGA3 Silent p.S27S 0.25 TCGA-CM-4746-01 11 61323669 61323669 C T SYT7 Silent p.S14S 0.32 TCGA-CM-4746-01 11 62293635 62293635 C T AHNAK Missense_Mutation p.A2752T 0.44 benign(0.003) TCGA-CM-4746-01 11 62296450 62296450 C T AHNAK Silent p.P1813P 0.38 TCGA-CM-4746-01 11 62383976 62383976 A G B3GAT3 Splice_Site p.X303_splice 0.51 TCGA-CM-4746-01 11 62384458 62384460 CCT - B3GAT3 Splice_Site p.X206_splice 0.26 TCGA-CM-4746-01 11 62459865 62459865 C T BSCL2 Silent p.A282A 0.53 TCGA-CM-4746-01 11 64029469 64029469 C T PLCB3 Silent p.R653R 0.35 TCGA-CM-4746-01 11 64337298 64337298 G A SLC22A11 Silent p.P519P 0.38 TCGA-CM-4746-01 11 64532974 64532974 C T SF1 Silent p.A658A 0.29 TCGA-CM-4746-01 11 64662845 64662845 G A ATG2A Missense_Mutation p.R1833C 0.55 deleterious(0) possibly_damaging(0.582) TCGA-CM-4746-01 11 65143710 65143710 G A SLC25A45 3'UTR 0.50 TCGA-CM-4746-01 11 66482842 66482842 G A SPTBN2 Missense_Mutation p.R112W 0.46 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 11 66617481 66617481 C T PC Missense_Mutation p.R942H 0.47 deleterious(0.04) benign(0.005) TCGA-CM-4746-01 11 67192084 67192084 G - CARNS1 3'UTR 0.33 TCGA-CM-4746-01 11 67274361 67274361 C T CDK2AP2 3'UTR 0.32 TCGA-CM-4746-01 11 68679035 68679035 T C IGHMBP2 Silent p.V225V 0.39 TCGA-CM-4746-01 11 70263207 70263207 G A CTTN Silent p.T182T 0.42 TCGA-CM-4746-01 11 71948748 71948748 C - INPPL1 Frame_Shift_Del p.R1156Gfs*46 0.26 TCGA-CM-4746-01 11 72397100 72397100 G A ARAP1 Missense_Mutation p.A1441V 0.36 deleterious(0.02) benign(0.069) TCGA-CM-4746-01 11 73008619 73008620 - A P2RY6 3'UTR 0.27 TCGA-CM-4746-01 11 76885890 76885890 G A MYO7A Missense_Mutation p.R675H 0.47 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 11 77885236 77885236 G A KCTD21 Missense_Mutation p.T122M 0.42 tolerated(0.19) benign(0.001) TCGA-CM-4746-01 11 77911266 77911266 G A USP35 Missense_Mutation p.E342K 0.33 deleterious(0) unknown(0) TCGA-CM-4746-01 11 78369022 78369022 T - TENM4 3'UTR 0.30 TCGA-CM-4746-01 11 79113119 79113119 C - TENM4 Intron 0.28 TCGA-CM-4746-01 11 822398 822398 G A PNPLA2 Missense_Mutation p.R163H 0.36 tolerated(0.06) possibly_damaging(0.642) TCGA-CM-4746-01 11 88386386 88386386 C T GRM5 Missense_Mutation p.R366Q 0.44 tolerated(0.2) benign(0.015) TCGA-CM-4746-01 11 8953808 8953808 G A C11orf16 Silent p.S16S 0.40 TCGA-CM-4746-01 11 89891373 89891373 C A NAALAD2 Missense_Mutation p.P286H 0.35 deleterious(0) probably_damaging(0.996) TCGA-CM-4746-01 11 92086576 92086576 G A FAT3 Missense_Mutation p.R433Q 0.46 benign(0.003) TCGA-CM-4746-01 12 102064135 102064135 A G MYBPC1 Missense_Mutation p.Q847R 0.47 tolerated(0.1) probably_damaging(0.995) TCGA-CM-4746-01 12 10213810 10213810 A G CLEC9A Missense_Mutation p.K86R 0.08 tolerated(0.14) benign(0.007) TCGA-CM-4746-01 12 102869508 102869508 A C IGF1 Missense_Mutation p.S45A 0.33 tolerated(0.36) benign(0.021) TCGA-CM-4746-01 12 108642090 108642090 G A WSCD2 Silent p.T556T 0.48 TCGA-CM-4746-01 12 109210898 109210898 C T SSH1 Missense_Mutation p.R106Q 0.39 deleterious(0) probably_damaging(0.983) TCGA-CM-4746-01 12 109717440 109717440 G A FOXN4 3'UTR 0.20 TCGA-CM-4746-01 12 10977973 10977973 T C TAS2R10 Missense_Mutation p.E299G 0.38 tolerated(0.15) benign(0.01) TCGA-CM-4746-01 12 109889386 109889386 G A KCTD10 3'UTR 0.33 TCGA-CM-4746-01 12 110032953 110032953 G A MVK Missense_Mutation p.G336S 0.41 deleterious(0) probably_damaging(0.998) TCGA-CM-4746-01 12 112600903 112600903 C T HECTD4 Missense_Mutation p.D4209N 0.36 probably_damaging(0.99) TCGA-CM-4746-01 12 113745603 113745603 G A SLC8B1 Missense_Mutation p.A435V 0.36 tolerated(0.09) possibly_damaging(0.658) TCGA-CM-4746-01 12 116457632 116457632 G A MED13L Silent p.D257D 0.40 TCGA-CM-4746-01 12 116457657 116457657 T - MED13L Frame_Shift_Del p.K249Rfs*23 0.28 TCGA-CM-4746-01 12 120899666 120899666 G T SRSF9 3'UTR 0.36 TCGA-CM-4746-01 12 122620108 122620109 - C MLXIP Frame_Shift_Ins p.V645Rfs*84 0.29 TCGA-CM-4746-01 12 123351466 123351466 C T VPS37B 3'UTR 0.56 TCGA-CM-4746-01 12 124846684 124846684 C T NCOR2 Missense_Mutation p.A1030T 0.25 benign(0.08) TCGA-CM-4746-01 12 125451349 125451349 G A DHX37 Missense_Mutation p.A527V 0.09 tolerated(0.28) benign(0.037) TCGA-CM-4746-01 12 12630318 12630318 G A DUSP16 Nonsense_Mutation p.R483* 0.42 TCGA-CM-4746-01 12 12982484 12982484 G A DDX47 Missense_Mutation p.R455H 0.33 deleterious_low_confidence(0) benign(0.434) TCGA-CM-4746-01 12 130827215 130827215 G A PIWIL1 Splice_Site p.X26_splice 0.39 TCGA-CM-4746-01 12 133324510 133324510 T C ANKLE2 Missense_Mutation p.M380V 0.39 deleterious(0.05) benign(0.139) TCGA-CM-4746-01 12 21926187 21926188 - CA KCNJ8 Frame_Shift_Ins p.T122* 0.29 TCGA-CM-4746-01 12 22001134 22001134 C T ABCC9 Missense_Mutation p.R939Q 0.37 tolerated(0.13) benign(0.294) TCGA-CM-4746-01 12 24982786 24982786 G A BCAT1 Missense_Mutation p.R376C 0.38 deleterious(0.01) benign(0.194) TCGA-CM-4746-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.38 deleterious(0.03) possibly_damaging(0.876) TCGA-CM-4746-01 12 27556372 27556372 C T ARNTL2 Missense_Mutation p.S495F 0.39 tolerated(0.79) benign(0.003) TCGA-CM-4746-01 12 31244686 31244686 G A DDX11 Missense_Mutation p.A375T 0.14 tolerated(0.22) benign(0.05) TCGA-CM-4746-01 12 31633006 31633006 C T DENND5B Missense_Mutation p.A141T 0.47 tolerated(0.51) possibly_damaging(0.852) TCGA-CM-4746-01 12 32729335 32729335 A - FGD4 Frame_Shift_Del p.K16Nfs*24 0.24 TCGA-CM-4746-01 12 32902924 32902924 T C YARS2 Silent p.T407T 0.38 TCGA-CM-4746-01 12 44180569 44180569 T - IRAK4 3'UTR 0.28 TCGA-CM-4746-01 12 47472028 47472028 T C AMIGO2 Missense_Mutation p.D253G 0.27 deleterious(0) possibly_damaging(0.772) TCGA-CM-4746-01 12 49169174 49169174 G A ADCY6 Missense_Mutation p.A631V 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-CM-4746-01 12 4919694 4919694 C T KCNA6 Missense_Mutation p.L163F 0.31 deleterious(0.05) possibly_damaging(0.859) TCGA-CM-4746-01 12 52788705 52788705 T C KRT82 3'UTR 0.08 TCGA-CM-4746-01 12 53215591 53215591 G T KRT79 3'UTR 0.40 TCGA-CM-4746-01 12 53647523 53647523 G A MFSD5 Missense_Mutation p.A409T 0.45 tolerated(0.48) benign(0.386) TCGA-CM-4746-01 12 53876677 53876677 C T MAP3K12 Missense_Mutation p.R637H 0.32 deleterious_low_confidence(0.01) benign(0.009) TCGA-CM-4746-01 12 54757587 54757587 G A GPR84 Silent p.L17L 0.38 TCGA-CM-4746-01 12 54795878 54795878 C A ITGA5 Splice_Site p.X712_splice 0.45 TCGA-CM-4746-01 12 56348059 56348059 C T PMEL Missense_Mutation p.R649H 0.28 tolerated(0.09) benign(0.005) TCGA-CM-4746-01 12 56487972 56487972 C T ERBB3 Missense_Mutation p.S568L 0.55 tolerated(0.22) benign(0.003) TCGA-CM-4746-01 12 56514561 56514561 G A ZC3H10 Missense_Mutation p.S72N 0.32 tolerated(0.07) benign(0.045) TCGA-CM-4746-01 12 57389286 57389286 C T GPR182 Missense_Mutation p.A98V 0.35 deleterious(0) probably_damaging(0.986) TCGA-CM-4746-01 12 57643044 57643044 C A STAC3 Missense_Mutation p.K38N 0.30 tolerated(0.34) benign(0.01) TCGA-CM-4746-01 12 57894286 57894286 T C MARS Missense_Mutation p.I425T 0.28 deleterious(0.02) probably_damaging(0.978) TCGA-CM-4746-01 12 57928147 57928147 G A DCTN2 Missense_Mutation p.A156V 0.12 deleterious(0.04) benign(0.075) TCGA-CM-4746-01 12 58217862 58217862 G T CTDSP2 Missense_Mutation p.P172H 0.28 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 12 6679679 6679679 C A CHD4 3'UTR 0.37 TCGA-CM-4746-01 12 6692405 6692405 C T CHD4 Missense_Mutation p.R1340H 0.31 deleterious(0) probably_damaging(0.954) TCGA-CM-4746-01 12 6747488 6747488 C A ACRBP Missense_Mutation p.S531I 0.09 deleterious(0) possibly_damaging(0.77) TCGA-CM-4746-01 12 6965973 6965973 C T USP5 Silent p.G229G 0.18 TCGA-CM-4746-01 12 7069324 7069324 G A PTPN6 Silent p.T501T 0.46 TCGA-CM-4746-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.27 TCGA-CM-4746-01 12 89984613 89984613 T A ATP2B1 3'UTR 0.41 TCGA-CM-4746-01 12 97330428 97330428 G A NEDD1 Silent p.A260A 0.43 TCGA-CM-4746-01 13 103053877 103053877 G A FGF14 Missense_Mutation p.T51M 0.39 deleterious(0.01) benign(0.221) TCGA-CM-4746-01 13 110437427 110437427 T C IRS2 Missense_Mutation p.H325R 0.40 tolerated(0.63) possibly_damaging(0.888) TCGA-CM-4746-01 13 110802619 110802619 G T COL4A1 3'UTR 0.26 TCGA-CM-4746-01 13 111290685 111290685 G A CARKD Silent p.T330T 0.11 TCGA-CM-4746-01 13 26959365 26959365 C T CDK8 Nonsense_Mutation p.R178* 0.43 TCGA-CM-4746-01 13 31036768 31036768 C T HMGB1 Silent p.A126A 0.33 TCGA-CM-4746-01 13 32823711 32823711 C T FRY Missense_Mutation p.R2353C 0.45 deleterious(0.01) possibly_damaging(0.677) TCGA-CM-4746-01 13 36744859 36744859 C T SOHLH2 Missense_Mutation p.A433T 0.39 tolerated(0.07) possibly_damaging(0.874) TCGA-CM-4746-01 13 43493453 43493453 G A EPSTI1 Missense_Mutation p.P225S 0.40 tolerated(0.21) benign(0.037) TCGA-CM-4746-01 13 46559430 46559430 A T ZC3H13 Splice_Site p.X574_splice 0.30 TCGA-CM-4746-01 13 51939676 51939676 T - INTS6 3'UTR 0.31 TCGA-CM-4746-01 13 67205534 67205534 G A PCDH9 Missense_Mutation p.R1050C 0.22 deleterious(0) probably_damaging(0.985) TCGA-CM-4746-01 13 84456308 84456308 C T SLITRK1 5'UTR 0.44 TCGA-CM-4746-01 13 96086127 96086127 G A CLDN10 Missense_Mutation p.G14R 0.35 tolerated(0.3) possibly_damaging(0.464) TCGA-CM-4746-01 13 96237102 96237102 T C DZIP1 Silent p.G804G 0.45 TCGA-CM-4746-01 14 100589891 100589891 G A EVL Missense_Mutation p.R125H 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4746-01 14 100793565 100793565 C T SLC25A47 Missense_Mutation p.T62M 0.42 tolerated(0.05) benign(0.386) TCGA-CM-4746-01 14 102689236 102689236 G A WDR20 3'UTR 0.33 TCGA-CM-4746-01 14 103371931 103371931 G A TRAF3 Missense_Mutation p.R506H 0.25 tolerated(0.17) benign(0.186) TCGA-CM-4746-01 14 105167939 105167939 G T INF2 Missense_Mutation p.E79D 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-CM-4746-01 14 105353411 105353411 G A CEP170B Silent p.P945P 0.29 TCGA-CM-4746-01 14 105359415 105359415 C T CEP170B Silent p.S1327S 0.35 TCGA-CM-4746-01 14 105614481 105614481 G - JAG2 Frame_Shift_Del p.G741Afs*21 0.24 TCGA-CM-4746-01 14 105677555 105677555 C T BRF1 Missense_Mutation p.V634M 0.27 tolerated(0.07) probably_damaging(0.983) TCGA-CM-4746-01 14 21871754 21871754 G A CHD8 Nonsense_Mutation p.Q1126* 0.39 TCGA-CM-4746-01 14 21992591 21992591 C T SALL2 Missense_Mutation p.R424H 0.39 deleterious(0) probably_damaging(0.994) TCGA-CM-4746-01 14 23744908 23744910 ACC - HOMEZ In_Frame_Del p.V511del 0.10 TCGA-CM-4746-01 14 23745594 23745594 A G HOMEZ Silent p.V281V 0.14 TCGA-CM-4746-01 14 24569653 24569653 C T PCK2 Intron 0.64 TCGA-CM-4746-01 14 51716454 51716454 G A TMX1 Missense_Mutation p.R212H 0.10 tolerated(0.89) benign(0.002) TCGA-CM-4746-01 14 60582090 60582090 C T PCNXL4 Missense_Mutation p.P189L 0.38 deleterious(0) probably_damaging(0.994) TCGA-CM-4746-01 14 63863383 63863383 T - PPP2R5E Frame_Shift_Del p.T201Qfs*26 0.25 TCGA-CM-4746-01 14 65550996 65550996 A G MAX Intron 0.07 TCGA-CM-4746-01 14 67850200 67850200 G A EIF2S1 3'UTR 0.34 TCGA-CM-4746-01 14 67940259 67940259 C - TMEM229B Frame_Shift_Del p.A128Pfs*30 0.28 TCGA-CM-4746-01 14 69558594 69558594 G A DCAF5 Missense_Mutation p.R226C 0.28 deleterious(0.01) possibly_damaging(0.551) TCGA-CM-4746-01 14 70242929 70242930 CT - SLC10A1 3'UTR 0.27 TCGA-CM-4746-01 14 73729422 73729422 C A PAPLN Silent p.P843P 0.23 TCGA-CM-4746-01 14 75378048 75378048 C T RPS6KL1 Silent p.R189R 0.25 TCGA-CM-4746-01 14 75537260 75537260 G A ZC2HC1C Intron 0.36 TCGA-CM-4746-01 14 77902215 77902215 G A VIPAS39 Missense_Mutation p.T295M 0.36 deleterious(0.01) benign(0.21) TCGA-CM-4746-01 14 89629043 89629043 G A FOXN3 Silent p.D396D 0.45 TCGA-CM-4746-01 14 91369289 91369289 C T RPS6KA5 Missense_Mutation p.A328T 0.32 tolerated(0.35) benign(0.004) TCGA-CM-4746-01 14 94847385 94847385 C T SERPINA1 Missense_Mutation p.R247H 0.31 tolerated(0.09) benign(0.33) TCGA-CM-4746-01 14 96010468 96010468 G A GLRX5 3'UTR 0.37 TCGA-CM-4746-01 15 101719026 101719026 C T CHSY1 Missense_Mutation p.E326K 0.40 deleterious(0.05) benign(0.426) TCGA-CM-4746-01 15 23890645 23890645 G A MAGEL2 Missense_Mutation p.R146C 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CM-4746-01 15 24925744 24925744 A T NPAP1 3'UTR 0.23 TCGA-CM-4746-01 15 41063454 41063454 G - C15orf62 3'UTR 0.21 TCGA-CM-4746-01 15 41730572 41730572 G A RTF1 Silent p.P84P 0.41 TCGA-CM-4746-01 15 41865882 41865882 G A TYRO3 Silent p.A717A 0.49 TCGA-CM-4746-01 15 42019475 42019475 G A MGA Silent p.T1176T 0.42 TCGA-CM-4746-01 15 42361130 42361130 C T PLA2G4D Missense_Mutation p.R747H 0.39 deleterious(0.01) possibly_damaging(0.84) TCGA-CM-4746-01 15 43585733 43585733 C T TGM7 Missense_Mutation p.R36H 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-CM-4746-01 15 44065397 44065397 G A ELL3 Missense_Mutation p.R371C 0.36 tolerated(0.21) benign(0.027) TCGA-CM-4746-01 15 44861677 44861677 C T SPG11 Silent p.R2168R 0.35 TCGA-CM-4746-01 15 45444705 45444705 G A DUOX1 Missense_Mutation p.V1139I 0.33 tolerated(0.84) benign(0.004) TCGA-CM-4746-01 15 45556921 45556921 T G SLC28A2 Silent p.T219T 0.42 TCGA-CM-4746-01 15 48787772 48787772 G A FBN1 Silent p.C811C 0.40 TCGA-CM-4746-01 15 49037163 49037163 A T CEP152 Missense_Mutation p.L1221I 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-CM-4746-01 15 57731035 57731035 C T CGNL1 Nonsense_Mutation p.R280* 0.33 TCGA-CM-4746-01 15 59179567 59179567 G A SLTM Nonsense_Mutation p.R850* 0.07 TCGA-CM-4746-01 15 59499164 59499164 C T LDHAL6B Missense_Mutation p.R9W 0.41 tolerated_low_confidence(0.15) benign(0.011) TCGA-CM-4746-01 15 64263738 64263738 C T DAPK2 Missense_Mutation p.D113N 0.44 deleterious(0) possibly_damaging(0.722) TCGA-CM-4746-01 15 65273254 65273254 A C SPG21 Missense_Mutation p.V58G 0.19 deleterious(0) possibly_damaging(0.88) TCGA-CM-4746-01 15 66169843 66169843 C T RAB11A Nonsense_Mutation p.R72* 0.43 TCGA-CM-4746-01 15 75144411 75144411 A G SCAMP2 Silent p.H114H 0.36 TCGA-CM-4746-01 15 75499709 75499709 C A C15orf39 Silent p.T440T 0.32 TCGA-CM-4746-01 15 75562457 75562457 G T GOLGA6C Nonsense_Mutation p.G667* 0.10 TCGA-CM-4746-01 15 76019561 76019561 C - ODF3L1 Frame_Shift_Del p.N170Tfs*141 0.18 TCGA-CM-4746-01 15 77134237 77134237 C T SCAPER Silent p.T77T 0.40 TCGA-CM-4746-01 15 78580718 78580718 G A WDR61 Missense_Mutation p.A190V 0.46 deleterious(0) possibly_damaging(0.614) TCGA-CM-4746-01 15 79045520 79045520 G A RP11-160C18.4 RNA 0.32 TCGA-CM-4746-01 15 79291122 79291122 C T RASGRF1 Missense_Mutation p.R947H 0.35 deleterious(0.05) benign(0.071) TCGA-CM-4746-01 15 79339200 79339200 C T RASGRF1 Missense_Mutation p.V256M 0.62 deleterious(0.02) benign(0.408) TCGA-CM-4746-01 15 79748604 79748604 G A KIAA1024 Missense_Mutation p.D39N 0.45 deleterious(0) possibly_damaging(0.715) TCGA-CM-4746-01 15 82336315 82336315 G C MEX3B Missense_Mutation p.S299C 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-CM-4746-01 15 85159580 85159580 G A ZSCAN2 Intron 0.12 TCGA-CM-4746-01 15 85401121 85401121 G A ALPK3 Missense_Mutation p.G1253D 0.45 deleterious(0.01) probably_damaging(0.937) TCGA-CM-4746-01 15 86124922 86124922 C T AKAP13 Missense_Mutation p.A1208V 0.17 tolerated_low_confidence(0.2) benign(0.003) TCGA-CM-4746-01 15 89415302 89415302 G T ACAN Missense_Mutation p.D2392Y 0.53 deleterious(0) probably_damaging(0.99) TCGA-CM-4746-01 15 89424653 89424653 C T HAPLN3 Missense_Mutation p.R143H 0.47 deleterious(0.02) probably_damaging(0.973) TCGA-CM-4746-01 15 89719201 89719201 G A ABHD2 Missense_Mutation p.V233M 0.32 tolerated(0.06) benign(0.4) TCGA-CM-4746-01 15 91043366 91043366 G T IQGAP1 3'UTR 0.40 TCGA-CM-4746-01 15 91185325 91185325 C A CRTC3 Missense_Mutation p.L605M 0.33 deleterious(0) probably_damaging(0.977) TCGA-CM-4746-01 15 91448608 91448608 C A MAN2A2 Missense_Mutation p.A87D 0.14 tolerated(0.48) benign(0.221) TCGA-CM-4746-01 15 92647690 92647690 C T SLCO3A1 Silent p.Y309Y 0.35 TCGA-CM-4746-01 15 92706215 92706215 C T SLCO3A1 Silent p.G661G 0.33 TCGA-CM-4746-01 16 105855 105855 G A SNRNP25 Missense_Mutation p.R80H 0.42 deleterious(0) probably_damaging(0.995) TCGA-CM-4746-01 16 11073214 11073214 C T CLEC16A Missense_Mutation p.P311L 0.39 tolerated(0.48) benign(0.002) TCGA-CM-4746-01 16 12875134 12875134 C T CPPED1 Missense_Mutation p.R66H 0.52 deleterious(0.04) possibly_damaging(0.671) TCGA-CM-4746-01 16 1416266 1416266 C T UNKL Missense_Mutation p.C673Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 16 15225367 15225367 G A RP11-1186N24.5 RNA 0.34 TCGA-CM-4746-01 16 15730001 15730001 G A KIAA0430 Missense_Mutation p.R115C 0.37 tolerated_low_confidence(0.19) benign(0.002) TCGA-CM-4746-01 16 15815483 15815483 G A MYH11 Silent p.A1465A 0.38 TCGA-CM-4746-01 16 18851057 18851057 G T SMG1 Missense_Mutation p.S2303Y 0.37 deleterious(0) probably_damaging(0.987) TCGA-CM-4746-01 16 2011238 2011240 AGG - NDUFB10 In_Frame_Del p.E74del 0.36 TCGA-CM-4746-01 16 2048324 2048324 G A ZNF598 Missense_Mutation p.A875V 0.11 possibly_damaging(0.572) TCGA-CM-4746-01 16 2293147 2293147 C T ECI1 Silent p.P214P 0.40 TCGA-CM-4746-01 16 24372744 24372744 A - CACNG3 Frame_Shift_Del p.S172Vfs*21 0.28 TCGA-CM-4746-01 16 27351507 27351507 G A IL4R Intron 0.36 TCGA-CM-4746-01 16 28507903 28507903 C A APOBR Missense_Mutation p.A514D 0.55 deleterious(0) possibly_damaging(0.82) TCGA-CM-4746-01 16 28877842 28877842 A G SH2B1 Missense_Mutation p.T143A 0.24 tolerated(1) benign(0.004) TCGA-CM-4746-01 16 29676668 29676668 C T SPN 3'UTR 0.46 TCGA-CM-4746-01 16 29870417 29870417 G A CDIPT 3'UTR 0.44 TCGA-CM-4746-01 16 29908311 29908311 C - SEZ6L2 Frame_Shift_Del p.A115Qfs*9 0.29 TCGA-CM-4746-01 16 30081584 30081584 A G ALDOA 3'UTR 0.33 TCGA-CM-4746-01 16 30208318 30208318 C - SLX1A Frame_Shift_Del p.H204Tfs*6 0.23 TCGA-CM-4746-01 16 30666165 30666165 G A PRR14 Missense_Mutation p.E292K 0.53 tolerated(0.08) benign(0.139) TCGA-CM-4746-01 16 30939906 30939906 C A FBXL19 Missense_Mutation p.A269D 0.24 tolerated(0.38) benign(0.01) TCGA-CM-4746-01 16 31089231 31089231 C - ZNF646 Frame_Shift_Del p.S531Afs*5 0.24 TCGA-CM-4746-01 16 31437486 31437486 T G ITGAD 3'UTR 0.56 TCGA-CM-4746-01 16 3293377 3293377 C T MEFV Missense_Mutation p.V704I 0.38 tolerated(1) benign(0.002) TCGA-CM-4746-01 16 338177 338177 G A AXIN1 Missense_Mutation p.A845V 0.38 tolerated(0.09) possibly_damaging(0.7) TCGA-CM-4746-01 16 3558347 3558347 C T CLUAP1 Missense_Mutation p.A93V 0.29 deleterious(0) probably_damaging(0.991) TCGA-CM-4746-01 16 3725372 3725372 C T TRAP1 Missense_Mutation p.V281I 0.82 tolerated(0.17) benign(0.022) TCGA-CM-4746-01 16 4024696 4024696 C T ADCY9 Silent p.S948S 0.39 TCGA-CM-4746-01 16 50335076 50335076 C T ADCY7 Missense_Mutation p.P440L 0.40 tolerated(0.05) probably_damaging(0.941) TCGA-CM-4746-01 16 57060841 57060841 G T NLRC5 Missense_Mutation p.E662D 0.41 tolerated(0.83) benign(0.001) TCGA-CM-4746-01 16 57596054 57596054 C T GPR114 Nonsense_Mutation p.Q17* 0.08 TCGA-CM-4746-01 16 58010494 58010494 C A TEPP Missense_Mutation p.P40H 0.57 deleterious_low_confidence(0) benign(0.418) TCGA-CM-4746-01 16 58314587 58314587 G A PRSS54 Silent p.F243F 0.39 TCGA-CM-4746-01 16 67337121 67337121 C T KCTD19 Missense_Mutation p.E191K 0.49 deleterious(0) benign(0.304) TCGA-CM-4746-01 16 67839401 67839401 T C RANBP10 Missense_Mutation p.T93A 0.33 tolerated(0.35) benign(0.444) TCGA-CM-4746-01 16 69202817 69202817 A - CIRH1A Frame_Shift_Del p.K681Rfs*? 0.27 TCGA-CM-4746-01 16 69778900 69778900 C T NOB1 Missense_Mutation p.R282Q 0.44 deleterious(0.02) possibly_damaging(0.783) TCGA-CM-4746-01 16 70211232 70211232 G A CLEC18C Missense_Mutation p.R102H 0.25 tolerated(0.66) benign(0.001) TCGA-CM-4746-01 16 71886621 71886621 C - ATXN1L 3'UTR 0.21 TCGA-CM-4746-01 16 72138456 72138457 - T DHX38 Frame_Shift_Ins p.G697Wfs*16 0.27 TCGA-CM-4746-01 16 72984417 72984417 C T ZFHX3 Missense_Mutation p.R1056Q 0.36 probably_damaging(0.978) TCGA-CM-4746-01 16 80638387 80638387 G A CDYL2 Silent p.D473D 0.46 TCGA-CM-4746-01 16 81990342 81990342 A C PLCG2 Silent p.R1205R 0.42 TCGA-CM-4746-01 16 823210 823210 G A MSLNL Silent p.I686I 0.48 TCGA-CM-4746-01 16 84127331 84127331 G A MBTPS1 Nonsense_Mutation p.R241* 0.45 TCGA-CM-4746-01 16 844076 844076 G A CHTF18 Missense_Mutation p.A609T 0.35 tolerated(0.71) benign(0.007) TCGA-CM-4746-01 16 84812659 84812659 C T USP10 Silent p.L790L 0.30 TCGA-CM-4746-01 16 85689338 85689338 C T GSE1 Silent p.D268D 0.42 TCGA-CM-4746-01 16 85690024 85690024 C T GSE1 Silent p.R355R 0.45 TCGA-CM-4746-01 16 87466762 87466762 T - ZCCHC14 Frame_Shift_Del p.N110Mfs*18 0.23 TCGA-CM-4746-01 16 88598433 88598434 TG - ZFPM1 Frame_Shift_Del p.C246Wfs*135 0.27 TCGA-CM-4746-01 16 88697725 88697725 C A ZC3H18 3'UTR 0.25 TCGA-CM-4746-01 16 88712452 88712452 C T CYBA Intron 0.43 TCGA-CM-4746-01 16 88780174 88780174 C A CTU2 Silent p.A331A 0.36 TCGA-CM-4746-01 16 88801364 88801364 G A PIEZO1 Silent p.I589I 0.50 TCGA-CM-4746-01 16 89805041 89805041 C T FANCA Missense_Mutation p.A1446T 0.09 tolerated(0.41) benign(0.002) TCGA-CM-4746-01 16 89927103 89927103 C T SPIRE2 Missense_Mutation p.A492V 0.61 tolerated(0.51) benign(0.004) TCGA-CM-4746-01 16 919947 919947 C T LMF1 Missense_Mutation p.R451Q 0.47 deleterious(0.02) possibly_damaging(0.595) TCGA-CM-4746-01 17 1399981 1399981 C T INPP5K Nonsense_Mutation p.W360* 0.17 TCGA-CM-4746-01 17 16346833 16346833 C T FAM211A 3'UTR 0.88 TCGA-CM-4746-01 17 1968887 1968887 G A SMG6 Missense_Mutation p.R1308C 0.86 deleterious(0) probably_damaging(0.997) TCGA-CM-4746-01 17 26966978 26966979 - G KIAA0100 Frame_Shift_Ins p.L319Pfs*9 0.18 TCGA-CM-4746-01 17 26988891 26988891 C T SDF2 Missense_Mutation p.A2T 0.38 tolerated(0.59) benign(0.003) TCGA-CM-4746-01 17 27620975 27620975 G A NUFIP2 Missense_Mutation p.H35Y 0.45 tolerated_low_confidence(0.41) unknown(0) TCGA-CM-4746-01 17 27620976 27620976 G A NUFIP2 Silent p.H34H 0.45 TCGA-CM-4746-01 17 36719666 36719666 C T SRCIN1 Silent p.A211A 0.09 TCGA-CM-4746-01 17 37646865 37646865 C T CDK12 Missense_Mutation p.R663C 0.40 probably_damaging(0.997) TCGA-CM-4746-01 17 38487587 38487587 C T RARA Silent p.G39G 0.12 TCGA-CM-4746-01 17 39034546 39034546 C T KRT20 Silent p.S330S 0.47 TCGA-CM-4746-01 17 39279607 39279607 G T KRTAP4-12 3'UTR 0.31 TCGA-CM-4746-01 17 40321577 40321577 C T KCNH4 Missense_Mutation p.R503H 0.68 tolerated(0.6) benign(0) TCGA-CM-4746-01 17 4047090 4047090 C A CYB5D2 Missense_Mutation p.A14D 0.81 deleterious_low_confidence(0.01) unknown(0) TCGA-CM-4746-01 17 42452468 42452468 C T ITGA2B Silent p.S913S 0.42 TCGA-CM-4746-01 17 42636380 42636380 C T FZD2 Missense_Mutation p.R442C 0.23 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 17 42992841 42992841 C T GFAP Missense_Mutation p.R5H 0.47 deleterious(0.01) benign(0.033) TCGA-CM-4746-01 17 43012779 43012779 C T KIF18B Missense_Mutation p.A107T 0.80 deleterious(0) probably_damaging(0.953) TCGA-CM-4746-01 17 4446426 4446426 C T MYBBP1A Missense_Mutation p.D892N 0.78 tolerated(0.38) benign(0.018) TCGA-CM-4746-01 17 44770355 44770355 G A NSF Silent p.T344T 0.06 TCGA-CM-4746-01 17 4858387 4858387 C T ENO3 Silent p.N154N 0.62 TCGA-CM-4746-01 17 55197761 55197761 C T AKAP1 3'UTR 0.40 TCGA-CM-4746-01 17 56277640 56277640 G A EPX Missense_Mutation p.R531H 0.14 tolerated(0.16) benign(0.008) TCGA-CM-4746-01 17 56435827 56435827 C T RNF43 Missense_Mutation p.R437Q 0.47 tolerated(0.1) benign(0.412) TCGA-CM-4746-01 17 56598686 56598686 C T SEPT4 Missense_Mutation p.G363D 0.36 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 17 57215234 57215235 - T SKA2 Intron 0.23 TCGA-CM-4746-01 17 57937568 57937568 G A TUBD1 3'UTR 0.46 TCGA-CM-4746-01 17 60059912 60059912 C T MED13 Missense_Mutation p.R1151H 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-CM-4746-01 17 61473211 61473211 C T TANC2 Silent p.G979G 0.08 TCGA-CM-4746-01 17 61842124 61842125 - T CCDC47 Frame_Shift_Ins p.N116Kfs*2 0.23 TCGA-CM-4746-01 17 66270135 66270135 G A SLC16A6 Silent p.T103T 0.31 TCGA-CM-4746-01 17 70119910 70119910 G - SOX9 Frame_Shift_Del p.V306Cfs*77 0.28 TCGA-CM-4746-01 17 73106433 73106433 T C ARMC7 Missense_Mutation p.L17P 0.47 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 17 73501110 73501110 G A CASKIN2 Silent p.H325H 0.45 TCGA-CM-4746-01 17 73739930 73739930 G A ITGB4 Silent p.A1033A 0.47 TCGA-CM-4746-01 17 74004255 74004255 C T EVPL Silent p.T1677T 0.53 TCGA-CM-4746-01 17 74540042 74540042 A G PRCD 3'Flank 0.23 TCGA-CM-4746-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.93 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 17 76135261 76135261 C T TMC8 Silent p.C614C 0.40 TCGA-CM-4746-01 17 76825006 76825006 G A USP36 Missense_Mutation p.P187S 0.33 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 17 78237427 78237427 G A RNF213 5'UTR 0.42 TCGA-CM-4746-01 17 78899222 78899222 C T RPTOR Missense_Mutation p.T954M 0.33 tolerated(0.15) benign(0.24) TCGA-CM-4746-01 17 79163448 79163448 G A AZI1 3'UTR 0.33 TCGA-CM-4746-01 17 79205183 79205183 G A ENTHD2 Intron 0.37 TCGA-CM-4746-01 17 79414763 79414763 C - RP11-1055B8.7 Frame_Shift_Del p.S1291Afs*42 0.32 TCGA-CM-4746-01 17 79419842 79419842 G A RP11-1055B8.7 Silent p.T1470T 0.35 TCGA-CM-4746-01 17 79857947 79857947 G A ANAPC11 Missense_Mutation p.D188N 1.00 tolerated_low_confidence(0.08) benign(0) TCGA-CM-4746-01 17 79867459 79867459 C T PCYT2 Missense_Mutation p.G37S 0.31 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 17 80049122 80049122 G A FASN Missense_Mutation p.R490C 0.38 deleterious(0.01) possibly_damaging(0.583) TCGA-CM-4746-01 17 80443410 80443410 G A NARF Missense_Mutation p.G337R 0.47 deleterious(0.03) possibly_damaging(0.665) TCGA-CM-4746-01 17 8733052 8733052 A G PIK3R6 Missense_Mutation p.F287S 0.88 deleterious(0) possibly_damaging(0.904) TCGA-CM-4746-01 18 120868 120869 - T ROCK1P1 RNA 0.47 TCGA-CM-4746-01 18 12340384 12340384 C T AFG3L2 Missense_Mutation p.R599H 0.33 deleterious(0.01) probably_damaging(1) TCGA-CM-4746-01 18 21110429 21110429 C T C18orf8 Missense_Mutation p.R583W 0.41 deleterious(0) probably_damaging(0.981) TCGA-CM-4746-01 18 21533032 21533032 C T LAMA3 Missense_Mutation p.P3272L 0.31 benign(0.098) TCGA-CM-4746-01 18 25565637 25565637 T C CDH2 Silent p.A610A 0.30 TCGA-CM-4746-01 18 25570127 25570127 T C CDH2 Missense_Mutation p.H511R 0.42 tolerated(0.07) benign(0.001) TCGA-CM-4746-01 18 28660146 28660146 C T DSC2 Missense_Mutation p.R479H 0.43 deleterious(0.04) benign(0.027) TCGA-CM-4746-01 18 32438352 32438352 C T DTNA Missense_Mutation p.R459W 0.32 deleterious(0) probably_damaging(0.998) TCGA-CM-4746-01 18 42643271 42643271 G A SETBP1 Missense_Mutation p.D1467N 0.42 tolerated(0.12) probably_damaging(0.995) TCGA-CM-4746-01 18 43221246 43221246 T C SLC14A2 Missense_Mutation p.I355T 0.12 deleterious(0.01) benign(0.158) TCGA-CM-4746-01 18 43820089 43820089 C T C18orf25 Silent p.G278G 0.43 TCGA-CM-4746-01 18 44549149 44549149 C T TCEB3CL Missense_Mutation p.A384T 0.15 tolerated(0.38) benign(0.229) TCGA-CM-4746-01 18 44561068 44561068 C T TCEB3B Missense_Mutation p.G190R 0.42 tolerated(0.43) benign(0.137) TCGA-CM-4746-01 18 52921877 52921877 G A TCF4 Missense_Mutation p.R503W 0.08 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 18 53252542 53252542 A C TCF4 Silent p.T140T 0.38 TCGA-CM-4746-01 18 55103397 55103397 C T ONECUT2 Missense_Mutation p.T150M 0.33 deleterious(0) probably_damaging(0.964) TCGA-CM-4746-01 18 59947642 59947642 C T KIAA1468 Missense_Mutation p.P1006L 0.44 deleterious(0) probably_damaging(0.998) TCGA-CM-4746-01 18 60021641 60021641 G A TNFRSF11A Missense_Mutation p.V101M 0.64 deleterious(0) probably_damaging(0.996) TCGA-CM-4746-01 18 61166450 61166450 A - SERPINB5 Frame_Shift_Del p.N223Ifs*59 0.27 TCGA-CM-4746-01 18 71797881 71797881 G A FBXO15 Silent p.I115I 0.34 TCGA-CM-4746-01 18 72114005 72114005 G - FAM69C Frame_Shift_Del p.L238Wfs*27 0.23 TCGA-CM-4746-01 18 77170863 77170863 G A NFATC1 Silent p.P183P 0.35 TCGA-CM-4746-01 18 8798208 8798208 G A SOGA2 Silent p.E785E 0.60 TCGA-CM-4746-01 18 905360 905360 G A ADCYAP1 5'UTR 0.32 TCGA-CM-4746-01 18 9559585 9559585 C T PPP4R1 Silent p.A620A 0.25 TCGA-CM-4746-01 19 10404455 10404455 C T ICAM5 Missense_Mutation p.A516V 0.48 deleterious(0.05) probably_damaging(0.964) TCGA-CM-4746-01 19 11098540 11098540 C - SMARCA4 Frame_Shift_Del p.I355Sfs*56 0.30 TCGA-CM-4746-01 19 11143976 11143976 C T SMARCA4 Missense_Mutation p.A1186V 0.38 possibly_damaging(0.742) TCGA-CM-4746-01 19 11457266 11457266 T G CCDC159 5'UTR 0.08 TCGA-CM-4746-01 19 11597638 11597638 G T ZNF653 Missense_Mutation p.F467L 0.32 tolerated(0.15) possibly_damaging(0.471) TCGA-CM-4746-01 19 12060898 12060898 T C ZNF700 Missense_Mutation p.S687P 0.39 tolerated(0.2) benign(0.022) TCGA-CM-4746-01 19 12907933 12907933 C T PRDX2 Missense_Mutation p.V187M 0.29 tolerated(0.06) probably_damaging(0.986) TCGA-CM-4746-01 19 13050366 13050366 G T CALR Silent p.G106G 0.34 TCGA-CM-4746-01 19 14520446 14520446 G A DDX39A Silent p.F292F 0.32 TCGA-CM-4746-01 19 1475092 1475092 C T C19orf25 Missense_Mutation p.R99Q 0.21 tolerated(0.8) benign(0.014) TCGA-CM-4746-01 19 14815943 14815943 G A ZNF333 Silent p.R128R 0.50 TCGA-CM-4746-01 19 15904856 15904856 G A OR10H5 5'UTR 0.14 TCGA-CM-4746-01 19 15918805 15918805 C T OR10H1 Missense_Mutation p.V15I 0.44 tolerated(0.94) benign(0.001) TCGA-CM-4746-01 19 16025191 16025191 C T CYP4F11 Missense_Mutation p.D441N 0.09 tolerated(0.4) benign(0.243) TCGA-CM-4746-01 19 17405257 17405257 G T ABHD8 Missense_Mutation p.A330D 0.24 deleterious(0) probably_damaging(0.978) TCGA-CM-4746-01 19 1775239 1775239 G A ONECUT3 Missense_Mutation p.R427H 0.41 deleterious(0) probably_damaging(0.962) TCGA-CM-4746-01 19 2249677 2249677 C T AMH Missense_Mutation p.R116W 0.54 deleterious(0) benign(0.385) TCGA-CM-4746-01 19 23159635 23159635 A G ZNF728 Silent p.T168T 0.09 TCGA-CM-4746-01 19 23159648 23159648 T G ZNF728 Missense_Mutation p.K164T 0.08 deleterious(0.03) possibly_damaging(0.7) TCGA-CM-4746-01 19 2717422 2717422 C T DIRAS1 Missense_Mutation p.R128Q 0.44 deleterious(0) probably_damaging(0.967) TCGA-CM-4746-01 19 2767203 2767203 G T SGTA Missense_Mutation p.L75M 0.56 tolerated(0.26) benign(0.123) TCGA-CM-4746-01 19 31769978 31769978 C T TSHZ3 Missense_Mutation p.D241N 0.52 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 19 3544004 3544004 G A C19orf71 Missense_Mutation p.R209Q 0.40 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-CM-4746-01 19 35617881 35617881 G A LGI4 Silent p.S223S 0.12 TCGA-CM-4746-01 19 36235021 36235021 C T U2AF1L4 Missense_Mutation p.R86Q 0.54 deleterious(0.04) benign(0.186) TCGA-CM-4746-01 19 36258738 36258738 G A C19orf55 Missense_Mutation p.A331T 0.49 tolerated(0.49) benign(0.235) TCGA-CM-4746-01 19 36595488 36595488 C T WDR62 Missense_Mutation p.P1408S 0.28 tolerated_low_confidence(0.44) benign(0.009) TCGA-CM-4746-01 19 38993535 38993535 G A RYR1 Silent p.S2617S 0.30 TCGA-CM-4746-01 19 39008037 39008037 G A RYR1 Missense_Mutation p.D3242N 0.53 benign(0.068) TCGA-CM-4746-01 19 39395882 39395882 C T NFKBIB Missense_Mutation p.T109M 0.56 tolerated(0.1) possibly_damaging(0.696) TCGA-CM-4746-01 19 39412677 39412677 C T SARS2 Silent p.T145T 0.49 TCGA-CM-4746-01 19 39600830 39600830 C T PAPL 3'UTR 0.15 TCGA-CM-4746-01 19 4013086 4013086 C T PIAS4 Missense_Mutation p.R65C 0.43 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 19 40540407 40540407 C A ZNF780B Missense_Mutation p.G787W 0.29 deleterious(0) probably_damaging(0.992) TCGA-CM-4746-01 19 41281695 41281695 G A MIA Missense_Mutation p.A56T 0.29 deleterious(0.04) probably_damaging(0.988) TCGA-CM-4746-01 19 42190845 42190845 G A CEACAM7 Silent p.H124H 0.34 TCGA-CM-4746-01 19 4247119 4247119 C A CCDC94 5'UTR 0.51 TCGA-CM-4746-01 19 42838254 42838254 C T MEGF8 Silent p.H149H 0.37 TCGA-CM-4746-01 19 43585115 43585115 G A PSG2 Silent p.D116D 0.56 TCGA-CM-4746-01 19 44150697 44150697 C T PLAUR 3'Flank 0.26 TCGA-CM-4746-01 19 44739729 44739729 C T ZNF227 Silent p.C382C 0.55 TCGA-CM-4746-01 19 45974486 45974486 G A FOSB Missense_Mutation p.R161H 0.57 deleterious(0) possibly_damaging(0.812) TCGA-CM-4746-01 19 46997539 46997539 C T PNMAL2 Missense_Mutation p.R395H 0.15 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-CM-4746-01 19 4714279 4714279 C T DPP9 Missense_Mutation p.A43T 0.19 tolerated(0.46) benign(0.002) TCGA-CM-4746-01 19 47197195 47197195 G A PRKD2 Missense_Mutation p.R505C 0.12 deleterious(0.02) probably_damaging(0.971) TCGA-CM-4746-01 19 47588598 47588598 C T ZC3H4 Missense_Mutation p.R315H 0.31 unknown(0) TCGA-CM-4746-01 19 47933432 47933432 C T SLC8A2 Missense_Mutation p.A894T 0.33 deleterious(0.02) possibly_damaging(0.548) TCGA-CM-4746-01 19 4793713 4793713 C T FEM1A Missense_Mutation p.T616M 0.35 tolerated(0.08) benign(0.133) TCGA-CM-4746-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.19 TCGA-CM-4746-01 19 49259337 49259337 G - FGF21 5'UTR 0.27 TCGA-CM-4746-01 19 49447676 49447676 G A DHDH Silent p.P269P 0.36 TCGA-CM-4746-01 19 49671272 49671272 G - TRPM4 Frame_Shift_Del p.G124Dfs*154 0.30 TCGA-CM-4746-01 19 49691952 49691952 G A TRPM4 Missense_Mutation p.A600T 0.25 deleterious(0) benign(0.196) TCGA-CM-4746-01 19 51920933 51920933 G A SIGLEC10 5'UTR 0.23 TCGA-CM-4746-01 19 52217155 52217155 C T HAS1 Missense_Mutation p.R421H 0.38 tolerated(0.11) benign(0.023) TCGA-CM-4746-01 19 53056482 53056482 G A ZNF808 Missense_Mutation p.E105K 0.32 tolerated(0.23) benign(0.108) TCGA-CM-4746-01 19 53856450 53856450 G A ZNF845 Missense_Mutation p.R841H 0.57 tolerated(0.06) benign(0.339) TCGA-CM-4746-01 19 54387473 54387473 C T PRKCG Silent p.G87G 0.67 TCGA-CM-4746-01 19 54515245 54515245 C T CACNG6 Silent p.S195S 0.49 TCGA-CM-4746-01 19 54973305 54973306 - C LENG9 Frame_Shift_Ins p.P491Afs*7 0.31 TCGA-CM-4746-01 19 55672693 55672693 G A DNAAF3 Missense_Mutation p.R321W 0.37 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 19 55889591 55889591 C T TMEM190 3'UTR 0.59 TCGA-CM-4746-01 19 56190108 56190108 C A EPN1 Missense_Mutation p.L150I 0.34 tolerated(0.09) unknown(0) TCGA-CM-4746-01 19 56599514 56599514 C T ZNF787 Missense_Mutation p.A343T 0.38 deleterious(0.01) benign(0.005) TCGA-CM-4746-01 19 57175375 57175375 C T ZNF835 Missense_Mutation p.A398T 0.62 tolerated(0.23) benign(0.022) TCGA-CM-4746-01 19 58370558 58370558 C T ZNF587 Nonsense_Mutation p.R260* 0.20 TCGA-CM-4746-01 19 58806558 58806558 C T ZNF8 Nonsense_Mutation p.R462* 0.67 TCGA-CM-4746-01 19 58880298 58880298 G A ZNF837 Silent p.R134R 0.21 TCGA-CM-4746-01 19 59023253 59023253 C T SLC27A5 Missense_Mutation p.V24M 0.64 tolerated_low_confidence(0.06) benign(0.167) TCGA-CM-4746-01 19 59073426 59073426 G A MZF1 3'UTR 0.34 TCGA-CM-4746-01 19 695447 695447 C T PRSS57 5'UTR 0.44 TCGA-CM-4746-01 19 7509295 7509295 C T ARHGEF18 Silent p.D334D 0.24 TCGA-CM-4746-01 19 7589943 7589943 G A MCOLN1 Missense_Mutation p.R43H 0.44 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 19 7600424 7600424 C T PNPLA6 5'UTR 0.21 TCGA-CM-4746-01 19 8657688 8657688 C T ADAMTS10 Missense_Mutation p.A516T 0.46 deleterious(0) probably_damaging(0.998) TCGA-CM-4746-01 19 9271535 9271535 G A ZNF317 Missense_Mutation p.R405Q 0.29 deleterious(0.01) possibly_damaging(0.732) TCGA-CM-4746-01 1 110031506 110031506 G A ATXN7L2 Missense_Mutation p.R274Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 1 11017712 11017712 G A C1orf127 Silent p.T218T 0.50 TCGA-CM-4746-01 1 111060619 111060619 T C KCNA10 Missense_Mutation p.Q264R 0.30 tolerated(0.66) benign(0.003) TCGA-CM-4746-01 1 111490639 111490639 A G LRIF1 Missense_Mutation p.V751A 0.33 tolerated(0.07) possibly_damaging(0.728) TCGA-CM-4746-01 1 115130471 115130471 C T DENND2C Missense_Mutation p.R845H 0.39 deleterious(0.01) benign(0.344) TCGA-CM-4746-01 1 11736959 11736959 C T MAD2L2 Missense_Mutation p.R93H 0.41 tolerated(0.21) benign(0.002) TCGA-CM-4746-01 1 117509554 117509554 C T PTGFRN Missense_Mutation p.A554V 0.33 deleterious(0) probably_damaging(0.99) TCGA-CM-4746-01 1 118167224 118167224 C T FAM46C 3'UTR 0.41 TCGA-CM-4746-01 1 12052736 12052736 T - MFN2 Frame_Shift_Del p.F102Lfs*11 0.31 TCGA-CM-4746-01 1 1238556 1238556 C T ACAP3 Missense_Mutation p.D71N 0.31 deleterious(0) possibly_damaging(0.722) TCGA-CM-4746-01 1 1258585 1258585 C T CPSF3L 5'UTR 0.35 TCGA-CM-4746-01 1 1275470 1275470 C T DVL1 Missense_Mutation p.G286D 0.27 deleterious(0) probably_damaging(0.982) TCGA-CM-4746-01 1 13497856 13497856 C T PRAMEF16 Missense_Mutation p.R385C 0.23 tolerated(1) benign(0) TCGA-CM-4746-01 1 145475424 145475424 T A ANKRD34A 3'UTR 0.45 TCGA-CM-4746-01 1 149399079 149399079 C T HIST2H3PS2 3'Flank 0.65 TCGA-CM-4746-01 1 149859243 149859245 TTG - HIST2H2AB In_Frame_Del p.N74del 0.18 TCGA-CM-4746-01 1 150818748 150818748 C A ARNT Missense_Mutation p.R73L 0.26 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 1 151318741 151318741 G - RFX5 Frame_Shift_Del p.P19Qfs*28 0.49 TCGA-CM-4746-01 1 151378489 151378489 G A POGZ Nonsense_Mutation p.R1008* 0.17 TCGA-CM-4746-01 1 153643407 153643407 A - ILF2 5'UTR 0.40 TCGA-CM-4746-01 1 154315941 154315942 - G ATP8B2 Frame_Shift_Ins p.K587Efs*10 0.23 TCGA-CM-4746-01 1 155034448 155034448 G A ADAM15 Silent p.P807P 0.28 TCGA-CM-4746-01 1 155287631 155287631 A - FDPS Intron 0.61 TCGA-CM-4746-01 1 156011727 156011727 C T UBQLN4 Missense_Mutation p.A468T 0.57 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 1 156142697 156142697 G A SEMA4A Silent p.T405T 0.19 TCGA-CM-4746-01 1 156217761 156217761 G T PAQR6 5'UTR 0.29 TCGA-CM-4746-01 1 156243238 156243238 C T SMG5 Missense_Mutation p.R183Q 0.25 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 1 156290739 156290739 C T CCT3 Missense_Mutation p.R167Q 0.33 tolerated(0.22) benign(0.005) TCGA-CM-4746-01 1 156347250 156347250 G A RHBG Missense_Mutation p.G116S 0.43 tolerated(0.18) benign(0.017) TCGA-CM-4746-01 1 156669800 156669800 G A CRABP2 3'UTR 0.30 TCGA-CM-4746-01 1 156823661 156823661 C T INSRR Missense_Mutation p.E174K 0.34 tolerated(0.49) benign(0.004) TCGA-CM-4746-01 1 1572147 1572147 G A CDK11B Missense_Mutation p.A608V 0.11 unknown(0) TCGA-CM-4746-01 1 1572537 1572537 A T CDK11B Missense_Mutation p.L536Q 0.29 unknown(0) TCGA-CM-4746-01 1 157648481 157648481 G T FCRL3 3'UTR 0.27 TCGA-CM-4746-01 1 158612249 158612249 G T SPTA1 Missense_Mutation p.N1563K 0.21 tolerated(0.4) benign(0.006) TCGA-CM-4746-01 1 158656434 158656434 A G SPTA1 5'UTR 0.61 TCGA-CM-4746-01 1 159175504 159175504 T C DARC Missense_Mutation p.L94P 0.26 deleterious(0.03) probably_damaging(0.977) TCGA-CM-4746-01 1 160094954 160094954 C T ATP1A2 Missense_Mutation p.S220L 0.59 deleterious(0) probably_damaging(0.967) TCGA-CM-4746-01 1 160616870 160616870 C T SLAMF1 5'UTR 0.29 TCGA-CM-4746-01 1 161130857 161130857 G A USP21 Missense_Mutation p.A143T 0.58 tolerated_low_confidence(0.49) benign(0) TCGA-CM-4746-01 1 162337071 162337071 C T NOS1AP Silent p.G445G 0.50 TCGA-CM-4746-01 1 16247387 16247387 G C SPEN Missense_Mutation p.G553A 0.29 probably_damaging(1) TCGA-CM-4746-01 1 16461564 16461564 C - EPHA2 Frame_Shift_Del p.A517Pfs*21 0.28 TCGA-CM-4746-01 1 16532517 16532517 C T ARHGEF19 Missense_Mutation p.V454M 0.41 deleterious(0.01) possibly_damaging(0.78) TCGA-CM-4746-01 1 1669812 1669812 G A SLC35E2 Silent p.S178S 0.39 TCGA-CM-4746-01 1 167757211 167757211 G A MPZL1 3'UTR 0.54 TCGA-CM-4746-01 1 170514085 170514086 - A GORAB Intron 0.22 TCGA-CM-4746-01 1 17322519 17322519 T C ATP13A2 Silent p.P498P 0.38 TCGA-CM-4746-01 1 180064743 180064743 C T CEP350 Missense_Mutation p.A2866V 0.30 benign(0) TCGA-CM-4746-01 1 182353732 182353732 G A GLUL Silent p.N310N 0.33 TCGA-CM-4746-01 1 186292867 186292867 G - TPR Frame_Shift_Del p.P2083Qfs*3 0.24 TCGA-CM-4746-01 1 19216553 19216553 C T ALDH4A1 Missense_Mutation p.V37I 0.36 tolerated(0.93) benign(0.001) TCGA-CM-4746-01 1 193018905 193018905 G A UCHL5 Nonsense_Mutation p.R73* 0.55 TCGA-CM-4746-01 1 1959606 1959606 C T GABRD Missense_Mutation p.S189L 0.51 deleterious(0.02) possibly_damaging(0.542) TCGA-CM-4746-01 1 19653727 19653727 C T PQLC2 Missense_Mutation p.R209W 0.09 deleterious(0) probably_damaging(0.995) TCGA-CM-4746-01 1 19653802 19653802 G A PQLC2 Missense_Mutation p.V234M 0.30 deleterious(0) probably_damaging(0.989) TCGA-CM-4746-01 1 197411080 197411081 - TA CRB1 Intron 0.53 TCGA-CM-4746-01 1 198498257 198498257 T C ATP6V1G3 Missense_Mutation p.Q46R 0.37 tolerated(0.11) probably_damaging(0.993) TCGA-CM-4746-01 1 19983463 19983463 C T MINOS1-NBL1 Silent p.H129H 0.43 TCGA-CM-4746-01 1 19983588 19983588 C - MINOS1-NBL1 Frame_Shift_Del p.H173Tfs*37 0.26 TCGA-CM-4746-01 1 202097021 202097021 G A GPR37L1 Silent p.T261T 0.41 TCGA-CM-4746-01 1 205042318 205042318 C T CNTN2 Silent p.P989P 0.12 TCGA-CM-4746-01 1 205130496 205130496 C T DSTYK Missense_Mutation p.G613D 0.22 deleterious(0.04) possibly_damaging(0.867) TCGA-CM-4746-01 1 205308894 205308894 C T KLHDC8A Missense_Mutation p.R140H 0.68 tolerated(0.58) benign(0.015) TCGA-CM-4746-01 1 205884072 205884072 G A SLC26A9 Missense_Mutation p.S871F 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-CM-4746-01 1 206773090 206773090 G A EIF2D Missense_Mutation p.P350L 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4746-01 1 208211783 208211783 T C PLXNA2 Missense_Mutation p.Q1566R 0.66 deleterious(0.02) probably_damaging(0.943) TCGA-CM-4746-01 1 209605545 209605545 C T MIR205HG Intron 0.63 TCGA-CM-4746-01 1 218504324 218504324 C T RRP15 Missense_Mutation p.T247M 0.26 deleterious(0) possibly_damaging(0.696) TCGA-CM-4746-01 1 21924542 21924542 G T RAP1GAP Missense_Mutation p.P696H 0.43 tolerated(0.05) possibly_damaging(0.54) TCGA-CM-4746-01 1 21932596 21932596 G A RAP1GAP Missense_Mutation p.A528V 0.38 tolerated(0.23) benign(0.105) TCGA-CM-4746-01 1 220231505 220231505 G A BPNT1 3'UTR 0.27 TCGA-CM-4746-01 1 228346842 228346842 C T GJC2 3'UTR 0.36 TCGA-CM-4746-01 1 228467609 228467609 C T OBSCN Missense_Mutation p.A2924V 0.24 possibly_damaging(0.546) TCGA-CM-4746-01 1 231342463 231342463 C T TRIM67 Silent p.N582N 0.51 TCGA-CM-4746-01 1 233134043 233134043 G A PCNXL2 Silent p.G1915G 0.48 TCGA-CM-4746-01 1 234452419 234452419 C T SLC35F3 Silent p.S300S 0.26 TCGA-CM-4746-01 1 237732536 237732536 C T RYR2 Missense_Mutation p.T1172I 0.26 probably_damaging(0.958) TCGA-CM-4746-01 1 240371401 240371401 C - FMN2 Frame_Shift_Del p.P1098Lfs*177 0.40 TCGA-CM-4746-01 1 24125169 24125169 C T GALE Missense_Mutation p.R58H 0.57 deleterious(0.02) benign(0.095) TCGA-CM-4746-01 1 248005013 248005013 G C OR11L1 Missense_Mutation p.F62L 0.48 tolerated(0.05) benign(0.023) TCGA-CM-4746-01 1 248457954 248457954 T C OR2T12 Silent p.L309L 0.08 TCGA-CM-4746-01 1 248756229 248756229 G T OR2T10 Missense_Mutation p.L281I 0.32 tolerated(0.21) benign(0.126) TCGA-CM-4746-01 1 249142538 249142538 C T ZNF672 Silent p.N355N 0.30 TCGA-CM-4746-01 1 26515361 26515361 C T CNKSR1 Missense_Mutation p.R597W 0.50 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 1 27720966 27720966 C T GPR3 Missense_Mutation p.R222C 0.51 deleterious(0) possibly_damaging(0.901) TCGA-CM-4746-01 1 31196314 31196314 G - MATN1 Frame_Shift_Del p.Q29Sfs*32 0.25 TCGA-CM-4746-01 1 32050600 32050600 C T TINAGL1 Missense_Mutation p.R274C 0.43 tolerated(0.08) probably_damaging(0.913) TCGA-CM-4746-01 1 32672904 32672904 G A IQCC Missense_Mutation p.V288M 0.10 tolerated(1) benign(0.015) TCGA-CM-4746-01 1 32793212 32793212 G A HDAC1 Silent p.T190T 0.47 TCGA-CM-4746-01 1 33246651 33246651 T C YARS Missense_Mutation p.K380E 0.09 tolerated(0.07) benign(0.071) TCGA-CM-4746-01 1 35900589 35900589 C T KIAA0319L Missense_Mutation p.R1019Q 0.40 tolerated(0.16) probably_damaging(0.996) TCGA-CM-4746-01 1 3646582 3646582 G A TP73 Silent p.P405P 0.47 TCGA-CM-4746-01 1 36521294 36521294 C T AGO3 Missense_Mutation p.A844V 0.17 tolerated(0.15) benign(0.285) TCGA-CM-4746-01 1 36788583 36788583 G A EVA1B Missense_Mutation p.A19V 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-CM-4746-01 1 37271741 37271741 T C GRIK3 Missense_Mutation p.I760V 0.34 deleterious(0.01) possibly_damaging(0.642) TCGA-CM-4746-01 1 40768449 40768449 G A COL9A2 Missense_Mutation p.R546W 0.42 deleterious(0) probably_damaging(0.988) TCGA-CM-4746-01 1 41608646 41608646 C T SCMH1 Missense_Mutation p.D96N 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-CM-4746-01 1 43868954 43868954 C T SZT2 Missense_Mutation p.A45V 0.28 tolerated(1) benign(0.369) TCGA-CM-4746-01 1 44415459 44415459 C G IPO13 Missense_Mutation p.A152G 0.50 tolerated(0.16) benign(0.012) TCGA-CM-4746-01 1 44437484 44437484 C T DPH2 Missense_Mutation p.R304W 0.37 deleterious(0) probably_damaging(0.97) TCGA-CM-4746-01 1 45484671 45484671 G A ZSWIM5 Missense_Mutation p.R1005C 0.42 tolerated(0.06) unknown(0) TCGA-CM-4746-01 1 46743920 46743920 A G RAD54L Missense_Mutation p.Q737R 0.14 tolerated(0.1) possibly_damaging(0.887) TCGA-CM-4746-01 1 4772200 4772200 C T AJAP1 Silent p.H90H 0.50 TCGA-CM-4746-01 1 51754542 51754542 C T TTC39A Missense_Mutation p.E531K 0.37 tolerated(0.1) possibly_damaging(0.736) TCGA-CM-4746-01 1 54670693 54670693 G A MRPL37 Missense_Mutation p.V117I 0.27 deleterious(0.04) possibly_damaging(0.491) TCGA-CM-4746-01 1 55446683 55446683 C A TMEM61 5'UTR 0.26 TCGA-CM-4746-01 1 57233514 57233515 - T C1orf168 Frame_Shift_Ins p.E351Rfs*4 0.24 TCGA-CM-4746-01 1 60338576 60338576 G T HOOK1 Missense_Mutation p.R709L 0.35 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 1 60505813 60505813 C T C1orf87 Missense_Mutation p.A175T 0.42 tolerated(0.97) benign(0) TCGA-CM-4746-01 1 6212530 6212530 G A CHD5 Missense_Mutation p.T271M 0.34 tolerated(0.67) benign(0) TCGA-CM-4746-01 1 63113817 63113817 C T DOCK7 Missense_Mutation p.R231H 0.38 deleterious(0) probably_damaging(0.997) TCGA-CM-4746-01 1 6688680 6688680 G A THAP3 Missense_Mutation p.A66T 0.41 tolerated(0.08) probably_damaging(0.975) TCGA-CM-4746-01 1 67148011 67148011 C - SGIP1 Frame_Shift_Del p.G427Dfs*71 0.30 TCGA-CM-4746-01 1 78001627 78001627 C T AK5 Silent p.D508D 0.38 TCGA-CM-4746-01 1 7861178 7861178 C T PER3 Missense_Mutation p.R266W 0.36 deleterious(0) possibly_damaging(0.876) TCGA-CM-4746-01 1 85583481 85583481 G T WDR63 Missense_Mutation p.G619V 0.06 tolerated(0.07) benign(0.197) TCGA-CM-4746-01 1 89475177 89475177 C T GBP3 Missense_Mutation p.A455T 0.40 deleterious(0.01) possibly_damaging(0.565) TCGA-CM-4746-01 1 906086 906086 G A PLEKHN1 Silent p.E144E 0.09 TCGA-CM-4746-01 1 94528187 94528187 G A ABCA4 Missense_Mutation p.A628V 0.18 tolerated(0.41) benign(0.002) TCGA-CM-4746-01 1 94586667 94586667 C T ABCA4 5'UTR 0.52 TCGA-CM-4746-01 1 95360667 95360667 T - SLC44A3 3'UTR 0.22 TCGA-CM-4746-01 1 95615808 95615808 G A TMEM56 Missense_Mutation p.G97D 0.45 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 1 9657097 9657097 G A TMEM201 Missense_Mutation p.A139T 0.28 tolerated(0.73) benign(0.009) TCGA-CM-4746-01 20 16729006 16729006 C T OTOR 5'UTR 0.34 TCGA-CM-4746-01 20 19955586 19955586 C - RIN2 Frame_Shift_Del p.P357Hfs*39 0.37 TCGA-CM-4746-01 20 23431198 23431198 G A CST11 Missense_Mutation p.A121V 0.42 tolerated(0.97) benign(0.022) TCGA-CM-4746-01 20 2616576 2616576 G T TMC2 Missense_Mutation p.A771S 0.09 tolerated(0.29) possibly_damaging(0.539) TCGA-CM-4746-01 20 30804509 30804511 AAC - POFUT1 In_Frame_Del p.Q177del 0.23 TCGA-CM-4746-01 20 31507990 31507990 T A EFCAB8 Missense_Mutation p.M218K 0.60 TCGA-CM-4746-01 20 31812268 31812268 C T BPIFA3 Missense_Mutation p.P129L 0.19 tolerated(0.93) benign(0) TCGA-CM-4746-01 20 3215424 3215425 - A SLC4A11 Frame_Shift_Ins p.V112Cfs*6 0.36 TCGA-CM-4746-01 20 32248066 32248066 G A NECAB3 Missense_Mutation p.R175W 0.32 deleterious(0.03) benign(0.052) TCGA-CM-4746-01 20 32878588 32878588 C T AHCY Missense_Mutation p.V239I 0.17 deleterious_low_confidence(0.04) benign(0.36) TCGA-CM-4746-01 20 32883274 32883274 C T AHCY Missense_Mutation p.R49H 0.25 deleterious_low_confidence(0.04) benign(0.075) TCGA-CM-4746-01 20 34055152 34055152 A G CEP250 Missense_Mutation p.E208G 0.41 probably_damaging(0.999) TCGA-CM-4746-01 20 34061296 34061296 G A CEP250 Missense_Mutation p.R436Q 0.40 benign(0.02) TCGA-CM-4746-01 20 3682224 3682224 A - SIGLEC1 Frame_Shift_Del p.H432Tfs*96 0.12 TCGA-CM-4746-01 20 3914675 3914675 G A RNF24 3'UTR 0.24 TCGA-CM-4746-01 20 42965711 42965711 G A R3HDML 5'UTR 0.26 TCGA-CM-4746-01 20 43378888 43378888 G A KCNK15 Silent p.A134A 0.14 TCGA-CM-4746-01 20 43837277 43837277 C T SEMG1 Missense_Mutation p.R447C 0.41 deleterious(0.04) benign(0.095) TCGA-CM-4746-01 20 43933246 43933246 G A MATN4 Missense_Mutation p.R89C 0.36 possibly_damaging(0.571) TCGA-CM-4746-01 20 44469556 44469556 G A SNX21 Silent p.P242P 0.50 TCGA-CM-4746-01 20 44472359 44472359 G A ACOT8 Silent p.G216G 0.25 TCGA-CM-4746-01 20 44513004 44513004 T C ZSWIM1 3'UTR 0.28 TCGA-CM-4746-01 20 44513162 44513162 G A ZSWIM1 3'UTR 0.23 TCGA-CM-4746-01 20 44577848 44577848 G A ZNF335 Nonsense_Mutation p.Q1288* 0.08 TCGA-CM-4746-01 20 44642804 44642804 C A MMP9 Missense_Mutation p.P598T 0.40 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 20 47242243 47242243 G A PREX1 3'UTR 0.27 TCGA-CM-4746-01 20 49620573 49620573 C T KCNG1 3'UTR 0.47 TCGA-CM-4746-01 20 50139876 50139876 C T NFATC2 Missense_Mutation p.V302M 0.68 deleterious(0.05) benign(0.094) TCGA-CM-4746-01 20 50244157 50244157 C T ATP9A Silent p.E609E 0.12 TCGA-CM-4746-01 20 54970639 54970639 C T CSTF1 Missense_Mutation p.R11C 0.34 deleterious(0.02) benign(0.031) TCGA-CM-4746-01 20 55206743 55206743 G A TFAP2C Silent p.V177V 0.48 TCGA-CM-4746-01 20 55748353 55748353 G A BMP7 Missense_Mutation p.A350V 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4746-01 20 55758855 55758855 G A BMP7 Missense_Mutation p.T294M 0.26 deleterious(0.01) benign(0.444) TCGA-CM-4746-01 20 58514453 58514453 G A PPP1R3D Silent p.C178C 0.14 TCGA-CM-4746-01 20 58521418 58521418 C T FAM217B 3'UTR 0.40 TCGA-CM-4746-01 20 5924808 5924808 T - TRMT6 Frame_Shift_Del p.K153Nfs*9 0.50 TCGA-CM-4746-01 20 60772997 60772997 C T MTG2 Missense_Mutation p.R148C 0.24 deleterious(0) probably_damaging(0.954) TCGA-CM-4746-01 20 60856153 60856153 C T OSBPL2 Silent p.C238C 0.21 TCGA-CM-4746-01 20 62124547 62124548 - G EEF1A2 Frame_Shift_Ins p.T239Hfs*50 0.24 TCGA-CM-4746-01 20 62196429 62196429 C T HELZ2 Missense_Mutation p.R1249H 0.27 tolerated(0.1) benign(0.021) TCGA-CM-4746-01 20 62839237 62839237 G A MYT1 Missense_Mutation p.E230K 0.19 benign(0.006) TCGA-CM-4746-01 21 19666748 19666748 T - TMPRSS15 Frame_Shift_Del p.K775Nfs*58 0.33 TCGA-CM-4746-01 21 27372415 27372415 A T APP Nonsense_Mutation p.C316* 0.46 TCGA-CM-4746-01 21 30378937 30378937 C T RWDD2B Missense_Mutation p.R254H 0.43 deleterious(0) probably_damaging(0.993) TCGA-CM-4746-01 21 31587610 31587610 C T CLDN8 Missense_Mutation p.G212R 0.36 tolerated(0.48) benign(0.034) TCGA-CM-4746-01 21 34927122 34927122 G A SON Missense_Mutation p.R1862H 0.45 unknown(0) TCGA-CM-4746-01 21 41151154 41151155 - GCT IGSF5 In_Frame_Ins p.C290dup 0.32 TCGA-CM-4746-01 21 43161932 43161932 G A RIPK4 Missense_Mutation p.P474L 0.55 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 21 45941910 45941910 G A TSPEAR Silent p.S474S 0.05 TCGA-CM-4746-01 21 47552288 47552288 C T COL6A2 Missense_Mutation p.A961V 0.44 tolerated(1) benign(0.002) TCGA-CM-4746-01 21 47678852 47678852 C T MCM3AP Splice_Site p.X1245_splice 0.26 TCGA-CM-4746-01 21 47754665 47754665 C T PCNT Missense_Mutation p.R208C 0.36 benign(0) TCGA-CM-4746-01 21 47766663 47766663 C T PCNT Missense_Mutation p.H243Y 0.46 possibly_damaging(0.758) TCGA-CM-4746-01 21 47786585 47786585 G A PCNT Missense_Mutation p.R899H 0.53 benign(0.056) TCGA-CM-4746-01 22 17625964 17625964 C T CECR5 Missense_Mutation p.A163T 0.33 tolerated(0.08) benign(0.052) TCGA-CM-4746-01 22 17688171 17688171 A G CECR1 Missense_Mutation p.L111S 0.17 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 22 20109856 20109856 C T RANBP1 Silent p.D74D 0.37 TCGA-CM-4746-01 22 21799858 21799858 C T HIC2 Missense_Mutation p.A225V 0.38 deleterious_low_confidence(0.05) benign(0.009) TCGA-CM-4746-01 22 24167488 24167488 A C SMARCB1 Missense_Mutation p.E291A 0.28 deleterious(0.01) probably_damaging(0.973) TCGA-CM-4746-01 22 26689086 26689086 C T SEZ6L Missense_Mutation p.T270M 0.47 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 22 29945099 29945099 A C THOC5 Missense_Mutation p.V13G 0.38 deleterious(0) possibly_damaging(0.713) TCGA-CM-4746-01 22 30735202 30735202 G A SF3A1 Missense_Mutation p.R472W 0.40 deleterious(0) probably_damaging(0.995) TCGA-CM-4746-01 22 31523968 31523968 C T INPP5J Missense_Mutation p.R239C 0.21 deleterious(0) probably_damaging(0.998) TCGA-CM-4746-01 22 32179902 32179902 C T DEPDC5 Missense_Mutation p.R165C 0.44 deleterious(0) probably_damaging(0.977) TCGA-CM-4746-01 22 32302401 32302401 C T DEPDC5 Missense_Mutation p.T1568M 0.41 tolerated(0.05) possibly_damaging(0.816) TCGA-CM-4746-01 22 35660027 35660027 G A HMGXB4 Intron 0.41 TCGA-CM-4746-01 22 36701974 36701974 A G MYH9 Splice_Site p.X720_splice 0.24 TCGA-CM-4746-01 22 37524312 37524312 G A IL2RB Nonsense_Mutation p.R494* 0.46 TCGA-CM-4746-01 22 37876306 37876306 C T MFNG Silent p.A112A 0.39 TCGA-CM-4746-01 22 39134712 39134712 G A SUN2 Silent p.G630G 0.62 TCGA-CM-4746-01 22 39496309 39496309 T C APOBEC3H Missense_Mutation p.F9S 0.33 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 22 40669486 40669486 G A TNRC6B Missense_Mutation p.R1008H 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-CM-4746-01 22 40757593 40757593 G A ADSL Missense_Mutation p.A322T 0.45 tolerated(0.11) possibly_damaging(0.874) TCGA-CM-4746-01 22 42093604 42093604 C T C22orf46 3'UTR 0.45 TCGA-CM-4746-01 22 42180780 42180780 T C MEI1 Missense_Mutation p.L1113P 0.35 deleterious(0) probably_damaging(0.961) TCGA-CM-4746-01 22 42523460 42523460 G A CYP2D6 Missense_Mutation p.R388C 0.15 tolerated(0.13) benign(0.003) TCGA-CM-4746-01 22 44892592 44892592 G A LDOC1L 3'UTR 0.54 TCGA-CM-4746-01 22 45736488 45736488 G A FAM118A 3'UTR 0.38 TCGA-CM-4746-01 22 47072542 47072542 G A GRAMD4 Missense_Mutation p.V537M 0.36 deleterious(0) benign(0.23) TCGA-CM-4746-01 22 50297546 50297546 G - ALG12 Frame_Shift_Del p.F470Sfs*63 0.30 TCGA-CM-4746-01 22 50609275 50609275 C T PANX2 Missense_Mutation p.A39V 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.715) TCGA-CM-4746-01 22 50685110 50685110 G A HDAC10 Silent p.D523D 0.35 TCGA-CM-4746-01 22 50719059 50719059 C T PLXNB2 Missense_Mutation p.R1345H 0.50 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 22 50832531 50832531 C T PPP6R2 Missense_Mutation p.P65L 0.40 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 22 50943656 50943656 A G LMF2 Splice_Site p.X386_splice 0.50 TCGA-CM-4746-01 2 106509531 106509531 C T NCK2 Missense_Mutation p.R348C 0.42 deleterious(0) probably_damaging(0.958) TCGA-CM-4746-01 2 110065801 110065801 C T SH3RF3 Silent p.L668L 0.42 TCGA-CM-4746-01 2 113033549 113033549 C - ZC3H6 5'UTR 0.30 TCGA-CM-4746-01 2 118577228 118577228 C T DDX18 Missense_Mutation p.T125M 0.43 tolerated(0.06) benign(0.27) TCGA-CM-4746-01 2 121554984 121554984 A - GLI2 Frame_Shift_Del p.K31Rfs*15 0.16 TCGA-CM-4746-01 2 122522918 122522918 C T TSN Missense_Mutation p.T221M 0.34 tolerated(0.07) benign(0.014) TCGA-CM-4746-01 2 128471559 128471559 G T WDR33 Missense_Mutation p.P969Q 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-CM-4746-01 2 131799021 131799021 G A ARHGEF4 Silent p.T441T 0.46 TCGA-CM-4746-01 2 132290601 132290601 G A CCDC74A Silent p.T322T 0.05 TCGA-CM-4746-01 2 135308186 135308186 C T TMEM163 Missense_Mutation p.R138H 0.25 deleterious(0) probably_damaging(0.997) TCGA-CM-4746-01 2 149247479 149247480 - A MBD5 Frame_Shift_Ins p.Q1196Tfs*30 0.23 TCGA-CM-4746-01 2 149539289 149539289 C A EPC2 Silent p.A599A 0.29 TCGA-CM-4746-01 2 150426295 150426295 G A MMADHC 3'UTR 0.35 TCGA-CM-4746-01 2 153000432 153000432 G A STAM2 Missense_Mutation p.R205W 0.36 deleterious(0) probably_damaging(0.927) TCGA-CM-4746-01 2 160813088 160813088 C T PLA2R1 Silent p.T985T 0.47 TCGA-CM-4746-01 2 162276752 162276752 C T TBR1 Missense_Mutation p.R392W 0.33 deleterious(0) probably_damaging(0.989) TCGA-CM-4746-01 2 1652215 1652215 C T PXDN Missense_Mutation p.G1113S 0.31 deleterious(0) probably_damaging(0.995) TCGA-CM-4746-01 2 169780221 169780221 C - ABCB11 Frame_Shift_Del p.V1293Wfs*2 0.26 TCGA-CM-4746-01 2 170361237 170361237 A G BBS5 3'UTR 0.38 TCGA-CM-4746-01 2 177036561 177036561 G A HOXD3 Silent p.L286L 0.58 TCGA-CM-4746-01 2 178482764 178482764 A G TTC30A Silent p.H222H 0.43 TCGA-CM-4746-01 2 179429710 179429710 T C TTN Missense_Mutation p.E27050G 0.49 TCGA-CM-4746-01 2 179542874 179542874 T C TTN Silent p.K11324K 0.36 TCGA-CM-4746-01 2 179576879 179576879 G A TTN Silent p.C9226C 0.12 TCGA-CM-4746-01 2 179636192 179636192 G A TTN Missense_Mutation p.A2621V 0.28 TCGA-CM-4746-01 2 18112530 18112530 G - KCNS3 Frame_Shift_Del p.K87Sfs*54 0.24 TCGA-CM-4746-01 2 183622515 183622515 T - DNAJC10 Frame_Shift_Del p.P639Qfs*22 0.33 TCGA-CM-4746-01 2 192815056 192815056 G A TMEFF2 Missense_Mutation p.A369V 0.36 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CM-4746-01 2 196723327 196723327 A G DNAH7 Silent p.A2646A 0.39 TCGA-CM-4746-01 2 201436992 201436992 A - SGOL2 Frame_Shift_Del p.G644Vfs*18 0.25 TCGA-CM-4746-01 2 201680103 201680103 G - BZW1 Frame_Shift_Del p.C67Lfs*6 0.24 TCGA-CM-4746-01 2 20174342 20174342 G T WDR35 Missense_Mutation p.A208D 0.33 deleterious(0.01) possibly_damaging(0.603) TCGA-CM-4746-01 2 202151290 202151290 A - CASP8 Frame_Shift_Del p.K532Nfs*73 0.26 TCGA-CM-4746-01 2 211541748 211541748 G A CPS1 Missense_Mutation p.S1437N 0.37 tolerated(0.45) benign(0.001) TCGA-CM-4746-01 2 219227578 219227578 C T C2orf62 Missense_Mutation p.R195C 0.29 tolerated(0.22) benign(0.034) TCGA-CM-4746-01 2 219252307 219252307 T - SLC11A1 Frame_Shift_Del p.F199Lfs*5 0.29 TCGA-CM-4746-01 2 219922229 219922229 C T IHH Missense_Mutation p.R168H 0.39 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 2 220039542 220039542 C T CNPPD1 Silent p.V156V 0.45 TCGA-CM-4746-01 2 220326767 220326767 C A SPEG Silent p.P868P 0.38 TCGA-CM-4746-01 2 226447101 226447101 C A NYAP2 Missense_Mutation p.P323H 0.20 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 2 227924140 227924140 C T COL4A4 Silent p.P788P 0.42 TCGA-CM-4746-01 2 227963485 227963485 G T COL4A4 Missense_Mutation p.R377S 0.30 benign(0.441) TCGA-CM-4746-01 2 233199401 233199401 G A DIS3L2 Missense_Mutation p.V784M 0.42 deleterious(0) probably_damaging(0.925) TCGA-CM-4746-01 2 233274497 233274497 C T ALPPL2 Missense_Mutation p.A505V 0.44 tolerated(0.11) benign(0.007) TCGA-CM-4746-01 2 238729898 238729898 G A RBM44 Splice_Site p.X700_splice 0.34 TCGA-CM-4746-01 2 240954170 240954170 G A NDUFA10 Nonsense_Mutation p.Q219* 0.40 TCGA-CM-4746-01 2 241664723 241664724 - T KIF1A Frame_Shift_Ins p.N1407Kfs*14 0.39 TCGA-CM-4746-01 2 241831032 241831032 G A C2orf54 Silent p.P221P 0.37 TCGA-CM-4746-01 2 242076435 242076435 G A PASK Missense_Mutation p.T374M 0.27 deleterious(0.02) possibly_damaging(0.847) TCGA-CM-4746-01 2 242129577 242129577 C T ANO7 Silent p.H87H 0.33 TCGA-CM-4746-01 2 25057803 25057803 G T ADCY3 Silent p.A555A 0.52 TCGA-CM-4746-01 2 25383986 25383986 G A POMC Silent p.N256N 0.19 TCGA-CM-4746-01 2 27277614 27277614 G A AGBL5 Missense_Mutation p.R223H 0.50 deleterious(0) probably_damaging(0.99) TCGA-CM-4746-01 2 27656603 27656603 G A NRBP1 Missense_Mutation p.V92I 0.38 deleterious(0.01) probably_damaging(0.963) TCGA-CM-4746-01 2 27667085 27667085 T - KRTCAP3 Intron 0.45 TCGA-CM-4746-01 2 27887266 27887266 G T SLC4A1AP Missense_Mutation p.R216M 0.36 deleterious(0) probably_damaging(0.928) TCGA-CM-4746-01 2 28464199 28464199 G A BRE Missense_Mutation p.V264M 0.38 tolerated(0.06) possibly_damaging(0.599) TCGA-CM-4746-01 2 31590894 31590894 T A XDH Silent p.G710G 0.36 TCGA-CM-4746-01 2 32667239 32667239 C A BIRC6 Missense_Mutation p.L1351I 0.40 probably_damaging(0.978) TCGA-CM-4746-01 2 3341855 3341855 C T TSSC1 Silent p.A64A 0.41 TCGA-CM-4746-01 2 37247901 37247901 C T HEATR5B Missense_Mutation p.R1311Q 0.37 deleterious(0.04) probably_damaging(0.914) TCGA-CM-4746-01 2 47202151 47202151 G A TTC7A Missense_Mutation p.R186H 0.65 tolerated(0.07) benign(0.003) TCGA-CM-4746-01 2 47693836 47693837 CA - MSH2 Frame_Shift_Del p.Q518Vfs*10 0.40 TCGA-CM-4746-01 2 55253228 55253228 T - RTN4 Frame_Shift_Del p.V670Yfs*4 0.24 TCGA-CM-4746-01 2 55549744 55549744 T C CCDC88A Missense_Mutation p.N1027D 0.28 tolerated(0.37) benign(0.002) TCGA-CM-4746-01 2 5841344 5841344 G C SOX11 3'UTR 0.32 TCGA-CM-4746-01 2 68873257 68873257 G T PROKR1 Missense_Mutation p.A102S 0.07 deleterious(0.02) probably_damaging(0.942) TCGA-CM-4746-01 2 68873329 68873329 C T PROKR1 Missense_Mutation p.R126C 0.42 deleterious(0) probably_damaging(0.954) TCGA-CM-4746-01 2 73679819 73679819 T C ALMS1 Silent p.N2054N 0.44 TCGA-CM-4746-01 2 74275202 74275202 G A TET3 Missense_Mutation p.D585N 0.51 tolerated(0.1) possibly_damaging(0.905) TCGA-CM-4746-01 2 74598683 74598683 G - DCTN1 Frame_Shift_Del p.P209Rfs*12 0.30 TCGA-CM-4746-01 2 74689312 74689312 C T MOGS Missense_Mutation p.R535Q 0.33 tolerated(0.12) benign(0.023) TCGA-CM-4746-01 2 74742011 74742011 C T TLX2 Silent p.S26S 0.34 TCGA-CM-4746-01 2 75891671 75891671 T - GCFC2 3'UTR 0.30 TCGA-CM-4746-01 2 80085247 80085247 G A CTNNA2 Missense_Mutation p.R136H 0.36 tolerated(0.16) benign(0.21) TCGA-CM-4746-01 2 85820323 85820323 G A VAMP5 3'UTR 0.14 TCGA-CM-4746-01 2 86437852 86437852 A - MRPL35 3'UTR 0.21 TCGA-CM-4746-01 2 90060854 90060854 C A IGKV6D-21 Silent p.I67I 0.29 TCGA-CM-4746-01 2 97370297 97370297 C T LMAN2L 3'Flank 0.42 TCGA-CM-4746-01 2 97377601 97377601 C T LMAN2L Silent p.T234T 0.33 TCGA-CM-4746-01 3 113679539 113679540 - T ZDHHC23 Intron 0.34 TCGA-CM-4746-01 3 119367328 119367328 C T POPDC2 Missense_Mutation p.R263H 0.33 deleterious(0) probably_damaging(0.997) TCGA-CM-4746-01 3 121151186 121151186 C T POLQ Missense_Mutation p.A2580T 0.11 deleterious(0.03) benign(0.386) TCGA-CM-4746-01 3 121417163 121417163 T - GOLGB1 Frame_Shift_Del p.N736Mfs*23 0.28 TCGA-CM-4746-01 3 123983428 123983428 C T KALRN Missense_Mutation p.T114M 0.33 deleterious(0.02) possibly_damaging(0.789) TCGA-CM-4746-01 3 126139055 126139055 C T CCDC37 Silent p.S355S 0.45 TCGA-CM-4746-01 3 12633234 12633234 G A RAF1 Missense_Mutation p.A389V 0.34 deleterious(0) probably_damaging(0.994) TCGA-CM-4746-01 3 126733025 126733025 C T PLXNA1 Missense_Mutation p.A804V 0.82 tolerated(1) benign(0.017) TCGA-CM-4746-01 3 127819448 127819448 G A RUVBL1 Missense_Mutation p.A248V 0.38 deleterious(0.03) benign(0.054) TCGA-CM-4746-01 3 128204810 128204810 C T GATA2 Missense_Mutation p.V211I 0.42 tolerated(1) benign(0) TCGA-CM-4746-01 3 128629076 128629076 T C RP11-723O4.6 3'UTR 0.38 TCGA-CM-4746-01 3 129291460 129291460 C T PLXND1 Silent p.T1023T 0.41 TCGA-CM-4746-01 3 129293301 129293301 C T PLXND1 Missense_Mutation p.D855N 0.28 deleterious(0) probably_damaging(0.998) TCGA-CM-4746-01 3 129308230 129308230 C T PLXND1 Silent p.A484A 0.42 TCGA-CM-4746-01 3 130107727 130107727 G - COL6A5 Frame_Shift_Del p.A724Pfs*16 0.10 TCGA-CM-4746-01 3 132337394 132337394 A - ACAD11 Intron 0.31 TCGA-CM-4746-01 3 134079139 134079139 G A AMOTL2 Silent p.A564A 0.33 TCGA-CM-4746-01 3 14535229 14535229 C T SLC6A6 3'Flank 0.41 TCGA-CM-4746-01 3 148741915 148741916 AA - GYG1 Frame_Shift_Del p.S230Cfs*4 0.25 TCGA-CM-4746-01 3 153840502 153840502 G A ARHGEF26 Missense_Mutation p.A241T 0.58 deleterious(0) possibly_damaging(0.74) TCGA-CM-4746-01 3 155838614 155838614 C A KCNAB1 Missense_Mutation p.L72I 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.507) TCGA-CM-4746-01 3 15686800 15686800 G A BTD Silent p.T479T 0.39 TCGA-CM-4746-01 3 15807807 15807807 G A ANKRD28 Nonsense_Mutation p.R42* 0.39 TCGA-CM-4746-01 3 16345203 16345203 C T OXNAD1 3'UTR 0.33 TCGA-CM-4746-01 3 16368383 16368383 C T RFTN1 Missense_Mutation p.G383S 0.38 deleterious(0) probably_damaging(0.992) TCGA-CM-4746-01 3 17051449 17051449 G A PLCL2 Missense_Mutation p.R78H 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-CM-4746-01 3 172163088 172163088 G T GHSR Missense_Mutation p.L322M 0.43 deleterious(0) probably_damaging(0.997) TCGA-CM-4746-01 3 178952084 178952084 C T PIK3CA Missense_Mutation p.H1047Y 0.36 tolerated(1) benign(0.008) TCGA-CM-4746-01 3 182631701 182631701 C T ATP11B Missense_Mutation p.P1124L 0.38 tolerated_low_confidence(0.06) benign(0.022) TCGA-CM-4746-01 3 183683284 183683284 C T ABCC5 Silent p.T613T 0.07 TCGA-CM-4746-01 3 183905973 183905973 G A ABCF3 Missense_Mutation p.R205H 0.26 deleterious(0) possibly_damaging(0.812) TCGA-CM-4746-01 3 184041197 184041197 C T EIF4G1 Missense_Mutation p.A704V 0.13 tolerated(0.47) benign(0.219) TCGA-CM-4746-01 3 184910969 184910969 A - EHHADH Frame_Shift_Del p.L406Cfs*35 0.31 TCGA-CM-4746-01 3 185190893 185190893 C T MAP3K13 Nonsense_Mutation p.R592* 0.32 TCGA-CM-4746-01 3 185635265 185635265 A - TRA2B 3'UTR 0.27 TCGA-CM-4746-01 3 186502466 186502468 TAT - EIF4A2 In_Frame_Del p.I65del 0.33 TCGA-CM-4746-01 3 187444616 187444616 C T BCL6 Silent p.T537T 0.31 TCGA-CM-4746-01 3 190995933 190995933 A - UTS2B Frame_Shift_Del p.Y44Ifs*12 0.26 TCGA-CM-4746-01 3 195475936 195475936 C T MUC4 Splice_Site p.X5291_splice 0.22 TCGA-CM-4746-01 3 25778897 25778897 C T NGLY1 Missense_Mutation p.E311K 0.52 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 3 25833043 25833043 T - OXSM Frame_Shift_Del p.F179Lfs*45 0.26 TCGA-CM-4746-01 3 37059062 37059062 A - MLH1 Frame_Shift_Del p.N287Tfs*10 0.25 TCGA-CM-4746-01 3 38017231 38017231 G A CTDSPL Missense_Mutation p.R184H 0.31 deleterious(0.03) benign(0.029) TCGA-CM-4746-01 3 38354565 38354565 C T SLC22A14 Silent p.A340A 0.35 TCGA-CM-4746-01 3 38523947 38523947 T G ACVR2B Missense_Mutation p.F414V 0.34 deleterious(0) probably_damaging(0.998) TCGA-CM-4746-01 3 38524874 38524874 A - ACVR2B 3'UTR 0.13 TCGA-CM-4746-01 3 38591840 38591840 G A SCN5A Missense_Mutation p.P2008L 0.26 deleterious_low_confidence(0.02) benign(0.365) TCGA-CM-4746-01 3 45132849 45132849 G A CDCP1 Silent p.R603R 0.46 TCGA-CM-4746-01 3 46560368 46560368 T - LRRC2 3'UTR 0.42 TCGA-CM-4746-01 3 47422568 47422568 C T PTPN23 5'UTR 0.28 TCGA-CM-4746-01 3 47452275 47452275 C - PTPN23 Frame_Shift_Del p.Y998Tfs*162 0.24 TCGA-CM-4746-01 3 48682519 48682519 C T CELSR3 Missense_Mutation p.A2641T 0.52 tolerated(0.42) probably_damaging(0.99) TCGA-CM-4746-01 3 48964947 48964947 A - ARIH2 5'UTR 0.30 TCGA-CM-4746-01 3 49051648 49051648 T C WDR6 Missense_Mutation p.M893T 0.25 deleterious(0) probably_damaging(0.995) TCGA-CM-4746-01 3 50416963 50416963 C T CACNA2D2 Missense_Mutation p.R351H 0.32 deleterious(0) probably_damaging(0.996) TCGA-CM-4746-01 3 51433461 51433461 A G VPRBP 3'UTR 0.49 TCGA-CM-4746-01 3 51749277 51749277 C T GRM2 Silent p.P496P 0.50 TCGA-CM-4746-01 3 51994678 51994678 G A PCBP4 Intron 0.29 TCGA-CM-4746-01 3 52022838 52022838 G A ACY1 Missense_Mutation p.R353H 0.47 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 3 53153929 53153929 C A RFT1 Missense_Mutation p.D223Y 0.51 deleterious(0) probably_damaging(0.954) TCGA-CM-4746-01 3 53276176 53276176 G - TKT Frame_Shift_Del p.R64Gfs*35 0.31 TCGA-CM-4746-01 3 57233922 57233922 C T HESX1 Missense_Mutation p.A9T 0.43 tolerated(0.22) benign(0.014) TCGA-CM-4746-01 3 57616442 57616442 C T DENND6A Missense_Mutation p.R506Q 0.45 deleterious(0.03) possibly_damaging(0.458) TCGA-CM-4746-01 3 58156439 58156440 - G FLNB Frame_Shift_Ins p.E2620Gfs*? 0.18 TCGA-CM-4746-01 3 63823657 63823657 C T THOC7 Missense_Mutation p.R116H 0.37 deleterious(0) probably_damaging(0.997) TCGA-CM-4746-01 3 70008462 70008462 C T MITF Missense_Mutation p.S351F 0.35 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 3 74413625 74413625 T C CNTN3 Silent p.K402K 0.45 TCGA-CM-4746-01 3 8675541 8675541 G T SSUH2 Intron 0.30 TCGA-CM-4746-01 3 93803155 93803155 C T NSUN3 Silent p.N109N 0.42 TCGA-CM-4746-01 3 9743569 9743569 C - MTMR14 Frame_Shift_Del p.S624Vfs*33 0.35 TCGA-CM-4746-01 3 9879867 9879867 G A RPUSD3 Missense_Mutation p.R297C 0.35 tolerated(0.09) benign(0.003) TCGA-CM-4746-01 3 99891191 99891191 G A CMSS1 Missense_Mutation p.R204H 0.35 tolerated(0.23) benign(0.009) TCGA-CM-4746-01 4 101109122 101109122 C T DDIT4L Silent p.T98T 0.35 TCGA-CM-4746-01 4 108911080 108911080 T C HADH 5'UTR 0.57 TCGA-CM-4746-01 4 113299019 113299019 C T ALPK1 Missense_Mutation p.S29L 0.48 tolerated(0.19) benign(0.035) TCGA-CM-4746-01 4 123280751 123280751 A - KIAA1109 Frame_Shift_Del p.S4894Vfs*36 0.27 TCGA-CM-4746-01 4 155411115 155411115 C T DCHS2 Missense_Mutation p.G465R 0.32 tolerated(0.22) benign(0.013) TCGA-CM-4746-01 4 155530818 155530818 G A FGG Silent p.I210I 0.33 TCGA-CM-4746-01 4 159789877 159789877 C T FNIP2 Missense_Mutation p.R697W 0.47 tolerated(0.06) probably_damaging(0.944) TCGA-CM-4746-01 4 184930779 184930780 - A STOX2 Frame_Shift_Ins p.F266Ifs*11 0.50 TCGA-CM-4746-01 4 188925442 188925442 A - ZFP42 3'UTR 0.53 TCGA-CM-4746-01 4 2930142 2930142 C T ADD1 Silent p.A733A 0.37 TCGA-CM-4746-01 4 3449279 3449279 C T HGFAC Silent p.D472D 0.30 TCGA-CM-4746-01 4 38774956 38774956 T - TLR10 Frame_Shift_Del p.A753Hfs*28 0.29 TCGA-CM-4746-01 4 41985889 41985889 G A DCAF4L1 3'UTR 0.48 TCGA-CM-4746-01 4 4214706 4214706 A G OTOP1 Silent p.I143I 0.40 TCGA-CM-4746-01 4 47625683 47625683 C T CORIN Nonsense_Mutation p.W815* 0.38 TCGA-CM-4746-01 4 52765450 52765450 A - DCUN1D4 Frame_Shift_Del p.K175Nfs*9 0.25 TCGA-CM-4746-01 4 56465343 56465343 C A NMU Silent p.R165R 0.37 TCGA-CM-4746-01 4 56750011 56750011 G A EXOC1 Missense_Mutation p.R416Q 0.26 deleterious(0.01) possibly_damaging(0.612) TCGA-CM-4746-01 4 57193873 57193873 C - KIAA1211 Frame_Shift_Del p.P1203Rfs*34 0.13 TCGA-CM-4746-01 4 66213872 66213872 C T EPHA5 Missense_Mutation p.R853Q 0.24 deleterious(0.01) probably_damaging(0.949) TCGA-CM-4746-01 4 6862839 6862839 C T KIAA0232 Missense_Mutation p.H244Y 0.39 deleterious(0.02) benign(0.108) TCGA-CM-4746-01 4 69179846 69179846 G A YTHDC1 Nonsense_Mutation p.R719* 0.41 TCGA-CM-4746-01 4 69362577 69362577 G T TMPRSS11E 3'UTR 0.38 TCGA-CM-4746-01 4 72897644 72897644 C T NPFFR2 Missense_Mutation p.A9V 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.499) TCGA-CM-4746-01 4 8224591 8224591 T C SH3TC1 Silent p.N379N 0.35 TCGA-CM-4746-01 4 88420707 88420707 A - SPARCL1 Frame_Shift_Del p.F7Sfs*29 0.32 TCGA-CM-4746-01 4 952390 952390 G A TMEM175 3'UTR 0.29 TCGA-CM-4746-01 4 9785349 9785349 G C DRD5 3'UTR 0.12 TCGA-CM-4746-01 4 9785421 9785421 G T DRD5 3'UTR 0.08 TCGA-CM-4746-01 5 102444286 102444286 T - GIN1 Frame_Shift_Del p.K42Nfs*22 0.29 TCGA-CM-4746-01 5 10286472 10286472 C T CMBL Missense_Mutation p.V154I 0.78 tolerated(0.2) benign(0.013) TCGA-CM-4746-01 5 109190924 109190924 G A MAN2A1 Missense_Mutation p.M1020I 0.37 deleterious(0.02) possibly_damaging(0.755) TCGA-CM-4746-01 5 112151228 112151229 - T APC Frame_Shift_Ins p.L292Ffs*4 0.23 TCGA-CM-4746-01 5 112164664 112164664 A - APC Frame_Shift_Del p.K581Rfs*9 0.24 TCGA-CM-4746-01 5 115782365 115782366 - G SEMA6A Frame_Shift_Ins p.K1013Qfs*15 0.32 TCGA-CM-4746-01 5 132270083 132270083 C T AFF4 Missense_Mutation p.R225H 0.40 tolerated(0.08) probably_damaging(0.998) TCGA-CM-4746-01 5 133473765 133473765 C - TCF7 Frame_Shift_Del p.H155Tfs*44 0.32 TCGA-CM-4746-01 5 138738341 138738341 G T SPATA24 Missense_Mutation p.F53L 0.30 deleterious(0.02) benign(0.037) TCGA-CM-4746-01 5 140023383 140023383 C T TMCO6 Nonsense_Mutation p.R313* 0.47 TCGA-CM-4746-01 5 140182889 140182889 G A PCDHA3 Missense_Mutation p.A703T 0.31 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-CM-4746-01 5 140236951 140236951 G A PCDHA10 Missense_Mutation p.V440M 0.40 tolerated_low_confidence(0.07) possibly_damaging(0.647) TCGA-CM-4746-01 5 140432537 140432537 A - PCDHB1 Frame_Shift_Del p.N496Tfs*12 0.24 TCGA-CM-4746-01 5 140502918 140502918 C T PCDHB4 Silent p.N446N 0.43 TCGA-CM-4746-01 5 140719307 140719307 G A PCDHGA2 Missense_Mutation p.V257M 0.34 deleterious_low_confidence(0.02) probably_damaging(0.945) TCGA-CM-4746-01 5 140763267 140763267 C T PCDHGA7 Silent p.I267I 0.31 TCGA-CM-4746-01 5 140799089 140799089 C T PCDHGB7 Missense_Mutation p.R555C 0.53 deleterious(0.02) benign(0.015) TCGA-CM-4746-01 5 142586796 142586796 G A ARHGAP26 Silent p.S674S 0.09 TCGA-CM-4746-01 5 14287023 14287023 C T TRIO Missense_Mutation p.R131C 0.29 probably_damaging(0.997) TCGA-CM-4746-01 5 145719404 145719404 G A POU4F3 Silent p.S138S 0.51 TCGA-CM-4746-01 5 149748435 149748435 G A TCOF1 Missense_Mutation p.V179I 0.42 tolerated(0.4) benign(0.002) TCGA-CM-4746-01 5 150563051 150563051 C T CCDC69 Missense_Mutation p.A280T 0.37 tolerated(0.76) benign(0.005) TCGA-CM-4746-01 5 150922506 150922506 G A FAT2 Missense_Mutation p.R2728W 0.54 possibly_damaging(0.773) TCGA-CM-4746-01 5 151202459 151202459 C A GLRA1 Missense_Mutation p.Q383H 0.38 tolerated(0.16) benign(0.02) TCGA-CM-4746-01 5 154271208 154271208 C T GEMIN5 Silent p.L1285L 0.44 TCGA-CM-4746-01 5 154287275 154287275 C T GEMIN5 Silent p.S757S 0.36 TCGA-CM-4746-01 5 156513974 156513974 C T HAVCR2 3'UTR 0.50 TCGA-CM-4746-01 5 159776082 159776082 G A C1QTNF2 3'UTR 0.50 TCGA-CM-4746-01 5 174151704 174151704 C T MSX2 Silent p.D14D 0.27 TCGA-CM-4746-01 5 175391972 175391972 C T THOC3 Missense_Mutation p.G204D 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4746-01 5 176025234 176025234 C A GPRIN1 Missense_Mutation p.K534N 0.31 tolerated(0.06) possibly_damaging(0.447) TCGA-CM-4746-01 5 178045725 178045725 G A CLK4 Silent p.Y72Y 0.35 TCGA-CM-4746-01 5 180218806 180218806 G A MGAT1 Missense_Mutation p.T389M 0.39 possibly_damaging(0.637) TCGA-CM-4746-01 5 180581978 180581978 C T OR2V2 Silent p.G12G 0.33 TCGA-CM-4746-01 5 32789864 32789864 C A AC026703.1 Silent p.A119A 0.31 TCGA-CM-4746-01 5 42808275 42808275 G T SEPP1 Missense_Mutation p.L61M 0.34 deleterious(0.02) possibly_damaging(0.601) TCGA-CM-4746-01 5 52402939 52402940 - G MOCS2 Frame_Shift_Ins p.L23Ifs*5 0.38 TCGA-CM-4746-01 5 54922328 54922328 A - SLC38A9 Frame_Shift_Del p.F560Lfs*17 0.30 TCGA-CM-4746-01 5 55237255 55237255 G A IL6ST Silent p.G804G 0.37 TCGA-CM-4746-01 5 60628446 60628446 G A ZSWIM6 Missense_Mutation p.R116H 0.57 deleterious(0) unknown(0) TCGA-CM-4746-01 5 60768775 60768775 T C ZSWIM6 Missense_Mutation p.I315T 0.30 deleterious(0) probably_damaging(0.994) TCGA-CM-4746-01 5 70672136 70672136 A C RP11-136K7.2 Intron 0.40 TCGA-CM-4746-01 5 71016471 71016471 C A CARTPT 3'UTR 0.38 TCGA-CM-4746-01 5 72798354 72798354 C T BTF3 Silent p.A81A 0.41 TCGA-CM-4746-01 5 76359234 76359234 T - AGGF1 3'UTR 0.29 TCGA-CM-4746-01 5 86675571 86675571 A - RASA1 Frame_Shift_Del p.N838Mfs*4 0.28 TCGA-CM-4746-01 5 90106332 90106332 G T GPR98 Missense_Mutation p.E5085D 0.42 possibly_damaging(0.874) TCGA-CM-4746-01 5 94922346 94922346 A - ARSK Frame_Shift_Del p.N262Tfs*39 0.27 TCGA-CM-4746-01 6 100895290 100895290 C T SIM1 Silent p.L284L 0.45 TCGA-CM-4746-01 6 106552897 106552897 A G PRDM1 Missense_Mutation p.S288G 0.33 tolerated(0.05) probably_damaging(0.93) TCGA-CM-4746-01 6 10802142 10802142 G A MAK Nonsense_Mutation p.R272* 0.31 TCGA-CM-4746-01 6 10956452 10956452 A - SYCP2L Frame_Shift_Del p.K715Nfs*27 0.25 TCGA-CM-4746-01 6 109854626 109854626 G A AK9 Missense_Mutation p.A1133V 0.31 tolerated(0.64) benign(0.21) TCGA-CM-4746-01 6 110746117 110746117 T - SLC22A16 Frame_Shift_Del p.T565Rfs*21 0.29 TCGA-CM-4746-01 6 129204339 129204339 C T LAMA2 5'Flank 0.50 TCGA-CM-4746-01 6 135250267 135250267 T A ALDH8A1 Missense_Mutation p.R312S 0.22 tolerated(0.15) possibly_damaging(0.672) TCGA-CM-4746-01 6 135286236 135286236 A T HBS1L 3'UTR 0.41 TCGA-CM-4746-01 6 137019677 137019677 A T MAP3K5 Silent p.P252P 0.29 TCGA-CM-4746-01 6 137524672 137524673 - T IFNGR1 Frame_Shift_Ins p.E233Rfs*9 0.08 TCGA-CM-4746-01 6 142519712 142519712 C T VTA1 Silent p.H219H 0.47 TCGA-CM-4746-01 6 158923543 158923543 C T TULP4 Missense_Mutation p.R950C 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CM-4746-01 6 1612432 1612439 TCCAATTA ATCCAATT FOXC1 3'UTR 0.27 TCGA-CM-4746-01 6 161469691 161469691 A - MAP3K4 Frame_Shift_Del p.T131Qfs*37 0.22 TCGA-CM-4746-01 6 163235288 163235288 C T PACRG Missense_Mutation p.S89L 0.34 tolerated(0.23) benign(0.322) TCGA-CM-4746-01 6 166826266 166826266 G A RPS6KA2 Missense_Mutation p.T737M 0.38 deleterious(0.01) probably_damaging(0.921) TCGA-CM-4746-01 6 168226929 168226929 C T MLLT4 5'Flank 0.44 TCGA-CM-4746-01 6 168457754 168457754 C T FRMD1 3'UTR 0.56 TCGA-CM-4746-01 6 24559316 24559316 G A KIAA0319 Nonsense_Mutation p.R887* 0.38 TCGA-CM-4746-01 6 26156678 26156680 GAA - HIST1H1E In_Frame_Del p.K23del 0.48 TCGA-CM-4746-01 6 26158761 26158761 T C HIST1H2BD Missense_Mutation p.Y122H 0.36 deleterious_low_confidence(0.03) benign(0.023) TCGA-CM-4746-01 6 26197388 26197388 G A HIST1H3D Missense_Mutation p.P31S 0.31 deleterious_low_confidence(0.02) benign(0) TCGA-CM-4746-01 6 29638133 29638133 C T MOG Missense_Mutation p.A223V 0.49 tolerated(0.18) probably_damaging(0.997) TCGA-CM-4746-01 6 31687029 31687029 C A LY6G6C Missense_Mutation p.E74D 0.37 tolerated(0.13) possibly_damaging(0.593) TCGA-CM-4746-01 6 31732388 31732388 A - SAPCD1 3'UTR 0.57 TCGA-CM-4746-01 6 31765402 31765402 A - LSM2 3'UTR 0.61 TCGA-CM-4746-01 6 31855623 31855623 C T EHMT2 Missense_Mutation p.V621M 0.52 tolerated(0.11) benign(0.242) TCGA-CM-4746-01 6 32006322 32006322 G A CYP21A2 Silent p.L41L 0.40 TCGA-CM-4746-01 6 32009949 32009949 G T TNXB Silent p.G532G 0.37 TCGA-CM-4746-01 6 3287312 3287312 C T SLC22A23 Missense_Mutation p.G443R 0.29 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 6 32945347 32945347 G T BRD2 Missense_Mutation p.Q443H 0.39 deleterious(0) probably_damaging(0.996) TCGA-CM-4746-01 6 348191 348191 G A DUSP22 Missense_Mutation p.V118M 0.13 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 6 35195420 35195420 C T SCUBE3 Missense_Mutation p.P50L 0.40 tolerated(0.19) benign(0.047) TCGA-CM-4746-01 6 38754564 38754564 C T DNAH8 Nonsense_Mutation p.R590* 0.33 TCGA-CM-4746-01 6 39835456 39835456 C T DAAM2 Missense_Mutation p.A200V 0.28 deleterious(0.02) benign(0.409) TCGA-CM-4746-01 6 4052975 4052975 A - PRPF4B Frame_Shift_Del p.K780Nfs*13 0.33 TCGA-CM-4746-01 6 41565521 41565521 C T FOXP4 Silent p.A576A 0.51 TCGA-CM-4746-01 6 43023336 43023336 G A MRPL2 Missense_Mutation p.R218W 0.56 deleterious(0.03) possibly_damaging(0.545) TCGA-CM-4746-01 6 43040700 43040700 G - KLC4 Frame_Shift_Del 0.32 TCGA-CM-4746-01 6 43528008 43528009 - C XPO5 Frame_Shift_Ins p.A377Sfs*6 0.28 TCGA-CM-4746-01 6 43578345 43578345 C T POLH Missense_Mutation p.R377C 0.31 deleterious(0) probably_damaging(0.933) TCGA-CM-4746-01 6 56464943 56464943 C T DST Missense_Mutation p.R1250H 0.39 benign(0.067) TCGA-CM-4746-01 6 56955041 56955041 C T ZNF451 5'UTR 0.41 TCGA-CM-4746-01 6 78172888 78172888 C T HTR1B Missense_Mutation p.R78Q 0.39 deleterious(0.02) possibly_damaging(0.663) TCGA-CM-4746-01 6 80982916 80982916 C T BCKDHB Missense_Mutation p.S339L 0.33 deleterious(0) benign(0.413) TCGA-CM-4746-01 6 83877659 83877659 C T DOPEY1 Missense_Mutation p.R2391C 0.48 deleterious(0.04) benign(0.263) TCGA-CM-4746-01 6 90440556 90440556 G A MDN1 Nonsense_Mutation p.R1677* 0.35 TCGA-CM-4746-01 7 100228595 100228595 C T TFR2 Missense_Mutation p.R396Q 0.37 tolerated(0.61) benign(0.002) TCGA-CM-4746-01 7 101839973 101839973 G C CUX1 Missense_Mutation p.A439P 0.39 tolerated(0.14) unknown(0) TCGA-CM-4746-01 7 102112914 102112914 C A LRWD1 Missense_Mutation p.S516R 0.48 tolerated(0.33) benign(0.346) TCGA-CM-4746-01 7 102584993 102584993 A - LRRC17 Frame_Shift_Del p.K424Nfs*12 0.39 TCGA-CM-4746-01 7 106508082 106508082 C T PIK3CG Missense_Mutation p.R26C 0.38 tolerated_low_confidence(0.17) benign(0.232) TCGA-CM-4746-01 7 106509579 106509579 C A PIK3CG Missense_Mutation p.H525N 0.51 tolerated(0.25) benign(0.391) TCGA-CM-4746-01 7 114619666 114619666 G A MDFIC Missense_Mutation p.G217E 0.39 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 7 117307295 117307295 T A CFTR 3'UTR 0.29 TCGA-CM-4746-01 7 123302848 123302849 - C LMOD2 Frame_Shift_Ins p.K405Qfs*119 0.35 TCGA-CM-4746-01 7 128852004 128852004 C - SMO Frame_Shift_Del p.P694Lfs*82 0.26 TCGA-CM-4746-01 7 139819000 139819000 T C KDM7A Missense_Mutation p.R387G 0.44 deleterious(0) possibly_damaging(0.552) TCGA-CM-4746-01 7 142723545 142723545 C T OR9A2 Silent p.P225P 0.31 TCGA-CM-4746-01 7 143573535 143573535 C T FAM115A Missense_Mutation p.R56H 0.33 tolerated(0.07) benign(0.009) TCGA-CM-4746-01 7 144060843 144060843 G A ARHGEF5 Missense_Mutation p.D361N 0.21 tolerated(0.2) benign(0.002) TCGA-CM-4746-01 7 1478611 1478611 G A MICALL2 Missense_Mutation p.R663C 0.46 tolerated(0.18) benign(0.002) TCGA-CM-4746-01 7 149513528 149513528 G A SSPO RNA 0.43 TCGA-CM-4746-01 7 150498683 150498683 G A TMEM176A Silent p.Q15Q 0.23 TCGA-CM-4746-01 7 150710935 150710935 G A NOS3 Missense_Mutation p.V1127M 0.37 deleterious(0.03) probably_damaging(0.996) TCGA-CM-4746-01 7 1510497 1510497 C T INTS1 Missense_Mutation p.A2148T 0.16 tolerated(1) benign(0) TCGA-CM-4746-01 7 155530325 155530325 G A RBM33 Silent p.P454P 0.24 TCGA-CM-4746-01 7 158695163 158695164 - AA WDR60 Frame_Shift_Ins p.E415Rfs*22 0.20 TCGA-CM-4746-01 7 1855851 1855851 G A MAD1L1 Missense_Mutation p.S671L 0.35 tolerated(0.07) possibly_damaging(0.509) TCGA-CM-4746-01 7 2472370 2472370 G A CHST12 Silent p.A32A 0.49 TCGA-CM-4746-01 7 2959181 2959181 G A CARD11 Missense_Mutation p.R779W 0.39 deleterious(0) probably_damaging(0.992) TCGA-CM-4746-01 7 2977594 2977594 G A CARD11 Missense_Mutation p.R364C 0.43 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 7 30695599 30695599 G A CRHR2 Silent p.V314V 0.45 TCGA-CM-4746-01 7 35673179 35673179 A - HERPUD2 3'UTR 0.37 TCGA-CM-4746-01 7 38796518 38796518 C T VPS41 Missense_Mutation p.V539I 0.31 tolerated(0.1) benign(0.41) TCGA-CM-4746-01 7 39504041 39504041 G A POU6F2 Missense_Mutation p.R611H 0.41 deleterious(0) unknown(0) TCGA-CM-4746-01 7 43590176 43590176 C T HECW1 Missense_Mutation p.R1461C 0.45 deleterious(0) probably_damaging(0.998) TCGA-CM-4746-01 7 4801930 4801930 G A FOXK1 Silent p.T679T 0.62 TCGA-CM-4746-01 7 5104321 5104321 C T RBAK Nonsense_Mutation p.R412* 0.49 TCGA-CM-4746-01 7 5401271 5401271 G T TNRC18 Missense_Mutation p.L1539M 0.52 probably_damaging(0.997) TCGA-CM-4746-01 7 71743729 71743729 C T CALN1 Silent p.S62S 0.35 TCGA-CM-4746-01 7 74171183 74171183 C T GTF2I Silent p.P962P 0.33 TCGA-CM-4746-01 7 75044239 75044239 G A POM121C 3'Flank 0.38 TCGA-CM-4746-01 7 796448 796448 G A HEATR2 Silent p.T429T 0.40 TCGA-CM-4746-01 7 82387898 82387898 G A PCLO Missense_Mutation p.T5141M 0.21 unknown(0) TCGA-CM-4746-01 7 86824616 86824616 C A DMTF1 3'UTR 0.31 TCGA-CM-4746-01 7 87082334 87082334 A - ABCB4 Frame_Shift_Del p.H155Mfs*8 0.21 TCGA-CM-4746-01 7 91509425 91509425 T C MTERF Intron 0.52 TCGA-CM-4746-01 7 92979198 92979198 C T CCDC132 Silent p.T772T 0.34 TCGA-CM-4746-01 7 96318150 96318150 T - SHFM1 3'UTR 0.22 TCGA-CM-4746-01 7 98569469 98569469 G A TRRAP Silent p.T2573T 0.33 TCGA-CM-4746-01 7 99771575 99771575 C T GPC2 Missense_Mutation p.G259S 0.35 tolerated(0.42) possibly_damaging(0.477) TCGA-CM-4746-01 8 100821644 100821644 G A VPS13B Nonsense_Mutation p.W2686* 0.47 TCGA-CM-4746-01 8 100866442 100866442 G A VPS13B Missense_Mutation p.A3634T 0.29 tolerated(0.07) possibly_damaging(0.499) TCGA-CM-4746-01 8 101118160 101118160 C T RGS22 5'UTR 0.64 TCGA-CM-4746-01 8 10470587 10470587 G A RP1L1 Missense_Mutation p.R341W 0.23 probably_damaging(0.976) TCGA-CM-4746-01 8 105361534 105361534 G T DCSTAMP Missense_Mutation p.V252F 0.29 deleterious(0.02) probably_damaging(0.952) TCGA-CM-4746-01 8 109247256 109247256 C A EIF3E Missense_Mutation p.A148S 0.29 tolerated(0.36) benign(0.006) TCGA-CM-4746-01 8 110394700 110394700 C T PKHD1L1 Missense_Mutation p.P106L 0.29 deleterious(0) probably_damaging(0.982) TCGA-CM-4746-01 8 11831602 11831602 T G DEFB136 Silent p.G27G 0.33 TCGA-CM-4746-01 8 12863828 12863828 G A KIAA1456 Silent p.L39L 0.23 TCGA-CM-4746-01 8 12882312 12882312 C T KIAA1456 3'UTR 0.26 TCGA-CM-4746-01 8 12952752 12952752 G A DLC1 Missense_Mutation p.A1057V 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-CM-4746-01 8 133945819 133945819 C T TG Silent p.D1610D 0.33 TCGA-CM-4746-01 8 142367698 142367698 C T GPR20 Missense_Mutation p.R109H 0.10 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 8 143994023 143994023 C T CYP11B2 Missense_Mutation p.V441M 0.28 deleterious(0) benign(0.06) TCGA-CM-4746-01 8 144458747 144458747 G A RHPN1 Missense_Mutation p.V77I 0.30 deleterious(0.02) possibly_damaging(0.685) TCGA-CM-4746-01 8 144620598 144620598 C T ZC3H3 Nonsense_Mutation p.W313* 0.30 TCGA-CM-4746-01 8 144800242 144800242 T C MAPK15 Missense_Mutation p.L64P 0.24 deleterious(0.01) possibly_damaging(0.513) TCGA-CM-4746-01 8 145617509 145617509 G A ADCK5 Missense_Mutation p.A411T 0.25 tolerated(0.09) benign(0.047) TCGA-CM-4746-01 8 145619760 145619760 C T CPSF1 Nonsense_Mutation p.W1193* 0.24 TCGA-CM-4746-01 8 145722521 145722521 C - PPP1R16A 5'UTR 0.44 TCGA-CM-4746-01 8 146107073 146107073 C T ZNF250 Missense_Mutation p.E504K 0.33 deleterious(0) probably_damaging(0.999) TCGA-CM-4746-01 8 1857569 1857569 C T ARHGEF10 Silent p.G692G 0.26 TCGA-CM-4746-01 8 21959324 21959324 C T FAM160B2 Nonsense_Mutation p.R605* 0.29 TCGA-CM-4746-01 8 22031192 22031192 C T BMP1 Missense_Mutation p.R76W 0.28 deleterious(0) benign(0.39) TCGA-CM-4746-01 8 22476824 22476824 C T CCAR2 Missense_Mutation p.R895C 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-CM-4746-01 8 22550481 22550481 G A EGR3 5'UTR 0.27 TCGA-CM-4746-01 8 27297899 27297899 C T PTK2B Silent p.R660R 0.31 TCGA-CM-4746-01 8 27463907 27463907 G A CLU Silent p.R127R 0.06 TCGA-CM-4746-01 8 28669964 28669964 C T INTS9 Silent p.A208A 0.18 TCGA-CM-4746-01 8 28980935 28980935 C T KIF13B Missense_Mutation p.A1143T 0.29 deleterious(0.02) possibly_damaging(0.863) TCGA-CM-4746-01 8 37702596 37702596 G A BRF2 Silent p.P224P 0.26 TCGA-CM-4746-01 8 38684735 38684735 G A TACC1 Missense_Mutation p.G501D 0.23 deleterious(0.01) possibly_damaging(0.742) TCGA-CM-4746-01 8 38840023 38840023 C T HTRA4 Missense_Mutation p.A374V 0.23 tolerated(0.24) benign(0.004) TCGA-CM-4746-01 8 41836162 41836162 C T KAT6A Silent p.T347T 0.33 TCGA-CM-4746-01 8 42302187 42302187 G A SLC20A2 Missense_Mutation p.P236L 0.29 deleterious(0) probably_damaging(0.983) TCGA-CM-4746-01 8 42958745 42958745 G A POMK Silent p.P18P 0.18 TCGA-CM-4746-01 8 52320933 52320933 G A PXDNL Missense_Mutation p.A1084V 0.18 deleterious(0) probably_damaging(0.966) TCGA-CM-4746-01 8 54142010 54142010 G A OPRK1 Silent p.Y330Y 0.31 TCGA-CM-4746-01 8 55542840 55542840 T G RP1 Missense_Mutation p.L2133R 0.14 deleterious(0) possibly_damaging(0.606) TCGA-CM-4746-01 8 62595025 62595025 G A ASPH Intron 0.21 TCGA-CM-4746-01 8 6360744 6360744 C T ANGPT2 Missense_Mutation p.G457R 0.29 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 8 65528705 65528706 - T CYP7B1 Frame_Shift_Ins p.N131Kfs*3 0.25 TCGA-CM-4746-01 8 70964430 70964430 T A PRDM14 Missense_Mutation p.D533V 0.24 deleterious(0) probably_damaging(0.997) TCGA-CM-4746-01 8 72111651 72111651 G A EYA1 Missense_Mutation p.A568V 0.25 deleterious(0) benign(0.152) TCGA-CM-4746-01 8 76452293 76452293 G T HNF4G Missense_Mutation p.M22I 0.20 tolerated(0.16) benign(0.005) TCGA-CM-4746-01 8 76452294 76452294 C G HNF4G Missense_Mutation p.Q23E 0.18 tolerated(0.17) benign(0.005) TCGA-CM-4746-01 8 87541306 87541306 T C CPNE3 Missense_Mutation p.L89P 0.16 deleterious(0.03) possibly_damaging(0.651) TCGA-CM-4746-01 8 87645015 87645015 A - CNGB3 Frame_Shift_Del p.S429Lfs*9 0.27 TCGA-CM-4746-01 8 99019456 99019456 G A MATN2 Splice_Site p.X484_splice 0.22 TCGA-CM-4746-01 9 101818546 101818546 A - COL15A1 Frame_Shift_Del p.E1069Rfs*84 0.27 TCGA-CM-4746-01 9 103062934 103062935 - A INVS Frame_Shift_Ins p.N1061Kfs*20 0.24 TCGA-CM-4746-01 9 104152774 104152775 - G MRPL50 Frame_Shift_Ins p.N151Qfs*24 0.25 TCGA-CM-4746-01 9 107535281 107535281 G A NIPSNAP3B Missense_Mutation p.R224Q 0.37 deleterious(0.04) possibly_damaging(0.48) TCGA-CM-4746-01 9 114489973 114489973 G A C9orf84 Nonsense_Mutation p.R528* 0.48 TCGA-CM-4746-01 9 115593109 115593109 G A SNX30 Silent p.T188T 0.45 TCGA-CM-4746-01 9 116185684 116185684 C - C9orf43 Frame_Shift_Del p.P189Qfs*29 0.16 TCGA-CM-4746-01 9 126795011 126795011 A C LHX2 3'UTR 0.43 TCGA-CM-4746-01 9 130582235 130582235 G A ENG Missense_Mutation p.R406C 0.56 deleterious(0) possibly_damaging(0.77) TCGA-CM-4746-01 9 130692113 130692113 G A PIP5KL1 Missense_Mutation p.R28W 0.44 deleterious(0.02) possibly_damaging(0.667) TCGA-CM-4746-01 9 131087517 131087517 C T COQ4 Nonsense_Mutation p.Q100* 0.44 TCGA-CM-4746-01 9 131197981 131197981 G A CERCAM Missense_Mutation p.A529T 0.57 tolerated(0.22) benign(0.003) TCGA-CM-4746-01 9 131222909 131222909 A - ODF2 Intron 0.22 TCGA-CM-4746-01 9 131303417 131303417 G A GLE1 Missense_Mutation p.G689S 0.09 deleterious(0) probably_damaging(0.922) TCGA-CM-4746-01 9 131454195 131454195 C T SET Missense_Mutation p.R77C 0.41 tolerated(0.11) benign(0.219) TCGA-CM-4746-01 9 131455957 131455957 G A SET Missense_Mutation p.S191N 0.39 tolerated(0.16) benign(0.248) TCGA-CM-4746-01 9 131670817 131670817 C T LRRC8A Silent p.D458D 0.38 TCGA-CM-4746-01 9 13188864 13188864 G A MPDZ Silent p.N761N 0.59 TCGA-CM-4746-01 9 133760374 133760374 G A ABL1 Silent p.P918P 0.41 TCGA-CM-4746-01 9 135771796 135771796 G A TSC1 Silent p.D1107D 0.43 TCGA-CM-4746-01 9 136233543 136233543 C T SURF4 Missense_Mutation p.V82I 0.20 tolerated(0.73) benign(0.012) TCGA-CM-4746-01 9 136233544 136233544 G A SURF4 Silent p.C81C 0.45 TCGA-CM-4746-01 9 138011843 138011843 A G OLFM1 Missense_Mutation p.Y408C 0.34 deleterious(0) probably_damaging(0.98) TCGA-CM-4746-01 9 139277947 139277947 C T SNAPC4 Silent p.A558A 0.28 TCGA-CM-4746-01 9 139836573 139836573 G A FBXW5 Missense_Mutation p.R341C 0.38 tolerated(0.06) benign(0.001) TCGA-CM-4746-01 9 140395259 140395259 C T PNPLA7 Silent p.T547T 0.29 TCGA-CM-4746-01 9 141013135 141013135 G A CACNA1B Missense_Mutation p.R1982Q 0.39 tolerated(0.57) benign(0.002) TCGA-CM-4746-01 9 35092043 35092043 G - PIGO Frame_Shift_Del p.P614Hfs*9 0.27 TCGA-CM-4746-01 9 35106860 35106860 C T FAM214B Missense_Mutation p.R308Q 0.41 deleterious(0.03) benign(0.004) TCGA-CM-4746-01 9 35548047 35548047 G A RUSC2 Missense_Mutation p.R510H 0.41 deleterious(0) probably_damaging(0.996) TCGA-CM-4746-01 9 35609691 35609691 C T TESK1 Silent p.H611H 0.59 TCGA-CM-4746-01 9 35660866 35660866 G A CCDC107 Silent p.S178S 0.28 TCGA-CM-4746-01 9 35697745 35697745 C T TLN1 3'UTR 0.38 TCGA-CM-4746-01 9 35819293 35819293 G A FAM221B Missense_Mutation p.R318W 0.28 deleterious(0.01) benign(0.361) TCGA-CM-4746-01 9 37887857 37887858 - A SLC25A51 Frame_Shift_Ins p.P231Sfs*3 0.23 TCGA-CM-4746-01 9 6610217 6610217 C T GLDC Missense_Mutation p.A204T 0.33 deleterious(0) probably_damaging(1) TCGA-CM-4746-01 9 72965082 72965082 C G SMC5 Missense_Mutation p.T981S 0.46 tolerated(0.26) benign(0.204) TCGA-CM-4746-01 9 84609830 84609830 G A SPATA31D1 Missense_Mutation p.G1482D 0.37 tolerated(0.38) benign(0.189) TCGA-CM-4746-01 9 88632426 88632426 C T NAA35 Silent p.S573S 0.43 TCGA-CM-4746-01 9 90346064 90346064 G A CTSL 3'UTR 0.83 TCGA-CM-4746-01 9 95608376 95608376 T G ZNF484 3'UTR 0.38 TCGA-CM-4746-01 9 95992142 95992142 G A WNK2 Silent p.T282T 0.38 TCGA-CM-4746-01 X 105937256 105937257 TT - RNF128 Frame_Shift_Del p.F10Lfs*11 0.45 TCGA-CM-4746-01 X 1407701 1407701 G A CSF2RA Silent p.A131A 0.27 TCGA-CM-4746-01 X 142718944 142718944 A G SLITRK4 5'UTR 0.82 TCGA-CM-4746-01 X 148607472 148607472 C T IDS Intron 0.33 TCGA-CM-4746-01 X 148607575 148607575 T C IDS Intron 0.74 TCGA-CM-4746-01 X 148607660 148607660 A G IDS Intron 0.84 TCGA-CM-4746-01 X 151303887 151303887 C T MAGEA10 Missense_Mutation p.S69N 0.14 deleterious(0.04) benign(0.246) TCGA-CM-4746-01 X 152616524 152616524 C T ZNF275 3'UTR 0.80 TCGA-CM-4746-01 X 152835163 152835164 - C ATP2B3 Intron 0.44 TCGA-CM-4746-01 X 153688774 153688774 G A PLXNA3 Missense_Mutation p.R84H 0.62 deleterious(0.05) probably_damaging(0.999) TCGA-CM-4746-01 X 153689841 153689841 C T PLXNA3 Missense_Mutation p.R333W 0.84 deleterious(0.01) probably_damaging(0.998) TCGA-CM-4746-01 X 22292463 22292463 G A ZNF645 3'UTR 0.91 TCGA-CM-4746-01 X 2407306 2407306 G T ZBED1 Silent p.L485L 0.44 TCGA-CM-4746-01 X 2644342 2644342 G A CD99 Missense_Mutation p.V135M 0.44 tolerated(0.06) possibly_damaging(0.867) TCGA-CM-4746-01 X 34148989 34148989 C T FAM47A Silent p.Q469Q 0.85 TCGA-CM-4746-01 X 38031152 38031152 G A SRPX Missense_Mutation p.R170W 0.82 deleterious(0.02) possibly_damaging(0.79) TCGA-CM-4746-01 X 56592200 56592200 A - UBQLN2 3'UTR 0.67 TCGA-CM-4746-01 X 7268151 7268151 C T STS Missense_Mutation p.A534V 0.91 tolerated(1) benign(0.003) TCGA-CM-4746-01 X 76776899 76776899 C A ATRX Missense_Mutation p.E2351D 0.80 possibly_damaging(0.754) TCGA-CM-4746-01 X 78010355 78010355 A - LPAR4 5'UTR 0.77 TCGA-CM-4746-01 X 78216948 78216948 G T P2RY10 Nonsense_Mutation p.E311* 0.16 TCGA-CM-4746-01 X 78618542 78618542 T C ITM2A Missense_Mutation p.E113G 0.21 deleterious(0) probably_damaging(0.928) TCGA-CM-4746-01 X 90693034 90693034 T - PABPC5 3'UTR 0.43 TCGA-CM-4747-01 10 100022616 100022616 C T LOXL4 Nonsense_Mutation p.W54* 0.18 TCGA-CM-4747-01 10 134996850 134996850 G A KNDC1 Silent p.A121A 0.23 TCGA-CM-4747-01 10 5009415 5009415 G C AKR1C1 Intron 0.19 TCGA-CM-4747-01 10 96053376 96053376 T G PLCE1 Missense_Mutation p.F1716C 0.15 tolerated(0.17) benign(0.438) TCGA-CM-4747-01 11 113076286 113076286 C T NCAM1 Missense_Mutation p.R189W 0.34 deleterious(0.01) possibly_damaging(0.707) TCGA-CM-4747-01 11 32955428 32955428 G A QSER1 Missense_Mutation p.G746D 0.20 tolerated(0.15) benign(0.01) TCGA-CM-4747-01 11 92534270 92534270 C T FAT3 Silent p.H2697H 0.42 TCGA-CM-4747-01 12 130926800 130926800 C T RIMBP2 Missense_Mutation p.R349K 0.16 tolerated(0.11) probably_damaging(0.997) TCGA-CM-4747-01 12 1983832 1983832 C A CACNA2D4 Missense_Mutation p.A606S 0.19 tolerated(0.14) benign(0.222) TCGA-CM-4747-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.43 deleterious(0.04) probably_damaging(0.993) TCGA-CM-4747-01 12 49438042 49438042 G A KMT2D Missense_Mutation p.T1710M 0.16 benign(0.043) TCGA-CM-4747-01 12 5154307 5154307 G A KCNA5 Missense_Mutation p.V332I 0.17 tolerated(1) benign(0.417) TCGA-CM-4747-01 13 111158799 111158799 T C COL4A2 Silent p.G1480G 0.20 TCGA-CM-4747-01 13 24868945 24868945 A G SPATA13 Missense_Mutation p.K1050R 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-CM-4747-01 13 32768298 32768298 G A FRY Missense_Mutation p.E1204K 0.19 deleterious(0) probably_damaging(0.961) TCGA-CM-4747-01 13 86369451 86369451 C T SLITRK6 Missense_Mutation p.R398H 0.17 deleterious(0.04) benign(0.026) TCGA-CM-4747-01 14 21979291 21979291 C A METTL3 Missense_Mutation p.R25S 0.16 deleterious(0) probably_damaging(0.998) TCGA-CM-4747-01 15 40661497 40661497 G A DISP2 Missense_Mutation p.A1062T 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-CM-4747-01 15 40758375 40758375 G A BAHD1 3'UTR 0.22 TCGA-CM-4747-01 15 63571473 63571473 C T APH1B Missense_Mutation p.A76V 0.31 tolerated(1) benign(0.006) TCGA-CM-4747-01 15 91292858 91292858 C T BLM Silent p.C120C 0.18 TCGA-CM-4747-01 16 2203224 2203225 - T RAB26 Splice_Site p.X223_splice 0.20 TCGA-CM-4747-01 16 3350315 3350315 G A TIGD7 Silent p.G100G 0.42 TCGA-CM-4747-01 16 4016526 4016526 G A ADCY9 Silent p.I1104I 0.49 TCGA-CM-4747-01 16 47733424 47733424 T C PHKB 3'UTR 0.10 TCGA-CM-4747-01 16 68010089 68010089 C T DPEP3 Silent p.L404L 0.32 TCGA-CM-4747-01 16 70935049 70935049 C T HYDIN Missense_Mutation p.R2969Q 0.25 possibly_damaging(0.776) TCGA-CM-4747-01 17 10541496 10541496 G A MYH3 Missense_Mutation p.A1198V 0.35 deleterious(0) benign(0.386) TCGA-CM-4747-01 17 17150322 17150322 C A COPS3 3'UTR 0.34 TCGA-CM-4747-01 17 20806047 20806047 C T RP11-344E13.3 RNA 0.36 TCGA-CM-4747-01 17 5436264 5436264 G A NLRP1 Silent p.C1058C 0.26 TCGA-CM-4747-01 17 76454674 76454674 G A DNAH17 Missense_Mutation p.T3303M 0.34 probably_damaging(0.95) TCGA-CM-4747-01 18 67563013 67563013 C T CD226 Silent p.S217S 0.34 TCGA-CM-4747-01 18 67992926 67992926 G A SOCS6 Missense_Mutation p.R341H 0.37 deleterious(0.04) benign(0.006) TCGA-CM-4747-01 18 70205345 70205345 G A CBLN2 3'UTR 0.31 TCGA-CM-4747-01 19 24309498 24309498 T C ZNF254 Silent p.Y232Y 0.13 TCGA-CM-4747-01 19 30314639 30314639 G A CCNE1 Silent p.P396P 0.34 TCGA-CM-4747-01 19 37440746 37440746 T - ZNF568 Frame_Shift_Del p.F231Sfs*151 0.15 TCGA-CM-4747-01 19 48789170 48789170 G A ZNF114 Missense_Mutation p.E97K 0.18 tolerated(0.48) benign(0.002) TCGA-CM-4747-01 19 58189913 58189913 T A ZSCAN4 Nonsense_Mutation p.C314* 0.13 TCGA-CM-4747-01 19 7505265 7505265 T C ARHGEF18 Missense_Mutation p.S147P 0.19 tolerated(0.07) benign(0.015) TCGA-CM-4747-01 19 8661266 8661266 C T ADAMTS10 Missense_Mutation p.R372H 0.17 tolerated(0.1) possibly_damaging(0.848) TCGA-CM-4747-01 19 8961961 8961961 G A MUC16 Silent p.C14472C 0.19 TCGA-CM-4747-01 19 9049153 9049153 C T MUC16 Silent p.T10826T 0.15 TCGA-CM-4747-01 19 9643544 9643544 G A ZNF426 Missense_Mutation p.T101I 0.06 tolerated(0.18) possibly_damaging(0.844) TCGA-CM-4747-01 1 152324057 152324057 G C FLG2 Missense_Mutation p.H2069D 0.19 benign(0.001) TCGA-CM-4747-01 1 155449492 155449492 T A ASH1L Missense_Mutation p.T1057S 0.05 tolerated_low_confidence(0.18) benign(0.157) TCGA-CM-4747-01 1 156025162 156025162 C G LAMTOR2 Missense_Mutation p.N59K 0.10 deleterious(0.03) benign(0.233) TCGA-CM-4747-01 1 156696763 156696763 T C ISG20L2 Missense_Mutation p.R228G 0.50 deleterious(0) possibly_damaging(0.483) TCGA-CM-4747-01 1 17033837 17033837 C T ESPNP RNA 0.24 TCGA-CM-4747-01 1 170952657 170952657 C T MROH9 Silent p.D237D 0.31 TCGA-CM-4747-01 1 220156596 220156596 G A EPRS Missense_Mutation p.P1079S 0.15 deleterious(0) probably_damaging(1) TCGA-CM-4747-01 1 224491532 224491532 G A NVL Missense_Mutation p.R285C 0.22 tolerated(0.25) benign(0.032) TCGA-CM-4747-01 1 224927060 224927060 G A CNIH3 3'UTR 0.40 TCGA-CM-4747-01 1 233120089 233120089 G A PCNXL2 Silent p.D2125D 0.36 TCGA-CM-4747-01 1 238090415 238090415 G A RP11-193H5.1 RNA 0.18 TCGA-CM-4747-01 1 248813816 248813816 C T OR2T27 Missense_Mutation p.V124I 0.17 deleterious(0.02) benign(0.013) TCGA-CM-4747-01 1 33407978 33407978 A G RNF19B Silent p.S496S 0.08 TCGA-CM-4747-01 20 1277811 1277811 G A SNPH Missense_Mutation p.V25M 0.16 tolerated(0.17) benign(0.009) TCGA-CM-4747-01 20 13260457 13260457 C T ISM1 Silent p.D185D 0.22 TCGA-CM-4747-01 20 23016520 23016520 G A SSTR4 Missense_Mutation p.V134I 0.35 tolerated(1) benign(0.386) TCGA-CM-4747-01 20 31372578 31372578 T C DNMT3B Silent p.D73D 0.20 TCGA-CM-4747-01 20 62172179 62172179 G A SRMS Missense_Mutation p.H487Y 0.32 tolerated_low_confidence(0.22) benign(0.02) TCGA-CM-4747-01 21 22782781 22782781 G A NCAM2 Silent p.E461E 0.19 TCGA-CM-4747-01 21 34134414 34134414 C T PAXBP1 Silent p.E288E 0.15 TCGA-CM-4747-01 21 43867261 43867261 C T UBASH3A Missense_Mutation p.A648V 0.24 tolerated(0.06) possibly_damaging(0.554) TCGA-CM-4747-01 21 46911229 46911229 G A COL18A1 Splice_Site p.X899_splice 0.16 TCGA-CM-4747-01 22 19349373 19349373 A G HIRA Silent p.P619P 0.08 TCGA-CM-4747-01 22 26164210 26164210 C T MYO18B Silent p.S109S 0.26 TCGA-CM-4747-01 22 29661544 29661546 CAG - RHBDD3 In_Frame_Del p.L24del 0.31 TCGA-CM-4747-01 22 37622730 37622730 C T RAC2 Missense_Mutation p.A188T 0.31 tolerated_low_confidence(0.09) benign(0.003) TCGA-CM-4747-01 2 141253142 141253142 G A LRP1B Missense_Mutation p.S3009L 0.19 benign(0.32) TCGA-CM-4747-01 2 1652772 1652772 C T PXDN Missense_Mutation p.R927H 0.23 deleterious(0.02) probably_damaging(1) TCGA-CM-4747-01 2 178483130 178483130 C T TTC30A Silent p.R100R 0.10 TCGA-CM-4747-01 2 185802813 185802813 A C ZNF804A Missense_Mutation p.H897P 0.37 tolerated(0.21) benign(0) TCGA-CM-4747-01 2 38301851 38301851 G A CYP1B1 Silent p.H227H 0.26 TCGA-CM-4747-01 2 54587822 54587823 - A C2orf73 3'UTR 0.33 TCGA-CM-4747-01 2 84926748 84926748 C G DNAH6 Missense_Mutation p.Q2570E 0.32 tolerated(0.85) benign(0.004) TCGA-CM-4747-01 3 121825184 121825184 C T CD86 Silent p.I180I 0.43 TCGA-CM-4747-01 3 126226624 126226624 C T UROC1 Missense_Mutation p.R188Q 0.25 tolerated(0.79) probably_damaging(0.988) TCGA-CM-4747-01 3 140401460 140401460 C T TRIM42 Silent p.C166C 0.42 TCGA-CM-4747-01 3 140406991 140406991 C T TRIM42 Silent p.L489L 0.23 TCGA-CM-4747-01 3 145914460 145914460 G A PLSCR4 Missense_Mutation p.P249S 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CM-4747-01 3 157177885 157177885 G T VEPH1 Intron 0.40 TCGA-CM-4747-01 3 178936083 178936083 A C PIK3CA Missense_Mutation p.E542A 0.18 deleterious(0.04) probably_damaging(0.914) TCGA-CM-4747-01 3 179046128 179046128 C T ZNF639 Missense_Mutation p.S16F 0.22 deleterious_low_confidence(0) benign(0.004) TCGA-CM-4747-01 3 20161213 20161213 C A KAT2B Missense_Mutation p.P425Q 0.08 tolerated(0.26) benign(0.027) TCGA-CM-4747-01 3 48456355 48456355 T C PLXNB1 Silent p.E1354E 0.20 TCGA-CM-4747-01 4 102030122 102030122 A G PPP3CA Missense_Mutation p.F125L 0.08 deleterious(0) possibly_damaging(0.844) TCGA-CM-4747-01 4 114900051 114900051 G A ARSJ 5'UTR 0.31 TCGA-CM-4747-01 4 128651816 128651816 C T SLC25A31 Missense_Mutation p.A39V 0.16 tolerated(0.06) benign(0.081) TCGA-CM-4747-01 4 154631518 154631518 G T RNF175 3'UTR 0.17 TCGA-CM-4747-01 4 160277271 160277271 G A RAPGEF2 Missense_Mutation p.A1479T 0.12 tolerated_low_confidence(0.09) benign(0.094) TCGA-CM-4747-01 4 178361498 178361498 G A AGA Silent p.D70D 0.18 TCGA-CM-4747-01 4 68447154 68447154 T G STAP1 Silent p.T165T 0.18 TCGA-CM-4747-01 5 133914376 133914376 G A JADE2 Missense_Mutation p.R581Q 0.32 tolerated(0.38) benign(0.359) TCGA-CM-4747-01 5 140182471 140182471 G A PCDHA3 Silent p.P563P 0.30 TCGA-CM-4747-01 5 140263638 140263638 C T PCDHA13 Silent p.R595R 0.20 TCGA-CM-4747-01 5 140480822 140480822 G A PCDHB3 Missense_Mutation p.D197N 0.33 deleterious_low_confidence(0.05) benign(0.098) TCGA-CM-4747-01 5 140502527 140502527 T C PCDHB4 Missense_Mutation p.V316A 0.07 deleterious(0.01) probably_damaging(0.919) TCGA-CM-4747-01 5 140531173 140531173 C T PCDHB6 Silent p.N445N 0.16 TCGA-CM-4747-01 5 140553814 140553814 C T PCDHB7 Silent p.P466P 0.21 TCGA-CM-4747-01 5 140554539 140554539 C T PCDHB7 Missense_Mutation p.A708V 0.06 tolerated_low_confidence(0.13) benign(0.091) TCGA-CM-4747-01 5 14389402 14389402 A T TRIO Missense_Mutation p.Y1318F 0.10 probably_damaging(0.997) TCGA-CM-4747-01 5 147593551 147593551 A G SPINK6 Missense_Mutation p.T54A 0.29 deleterious(0) probably_damaging(0.999) TCGA-CM-4747-01 5 156608027 156608027 G T ITK Missense_Mutation p.K13N 0.26 deleterious(0) probably_damaging(1) TCGA-CM-4747-01 5 169810749 169810749 G A KCNMB1 Silent p.N80N 0.10 TCGA-CM-4747-01 5 32790100 32790100 A - NPR3 3'UTR 0.31 TCGA-CM-4747-01 5 44388596 44388596 C T FGF10 Silent p.A63A 0.18 TCGA-CM-4747-01 6 117642385 117642385 G A ROS1 Intron 0.15 TCGA-CM-4747-01 6 142468454 142468454 C T VTA1 Silent p.L10L 0.52 TCGA-CM-4747-01 6 143091177 143091177 C G HIVEP2 Missense_Mutation p.D1567H 0.08 deleterious(0) possibly_damaging(0.907) TCGA-CM-4747-01 6 161966171 161966172 - T PARK2 Intron 0.32 TCGA-CM-4747-01 6 26388304 26388314 GCATATCTGGA - BTN2A2 Frame_Shift_Del p.C169Wfs*16 0.25 TCGA-CM-4747-01 6 28327546 28327546 C T ZKSCAN3 Silent p.R61R 0.21 TCGA-CM-4747-01 6 33036464 33036464 C T HLA-DPA1 Missense_Mutation p.R249H 0.24 tolerated(0.21) benign(0.002) TCGA-CM-4747-01 6 35773616 35773616 C T LHFPL5 Missense_Mutation p.P57S 0.18 deleterious(0.02) probably_damaging(1) TCGA-CM-4747-01 7 117365287 117365287 G A CTTNBP2 Silent p.G1360G 0.21 TCGA-CM-4747-01 7 128850281 128850281 T C SMO Missense_Mutation p.L515P 0.08 deleterious(0) possibly_damaging(0.898) TCGA-CM-4747-01 7 138487669 138487669 C A TMEM213 Missense_Mutation p.A60D 0.24 deleterious(0.03) possibly_damaging(0.82) TCGA-CM-4747-01 7 2977554 2977554 C T CARD11 Missense_Mutation p.R377Q 0.26 deleterious(0.01) benign(0.148) TCGA-CM-4747-01 7 29915498 29915498 C T WIPF3 Missense_Mutation p.A48V 0.24 deleterious(0) probably_damaging(0.999) TCGA-CM-4747-01 7 5966159 5966159 C G RSPH10B Missense_Mutation p.R818T 0.03 deleterious(0.03) possibly_damaging(0.698) TCGA-CM-4747-01 7 65223001 65223001 G A SNORA22 3'Flank 0.10 TCGA-CM-4747-01 7 77975316 77975316 G T MAGI2 Missense_Mutation p.A383E 0.23 deleterious(0) probably_damaging(0.998) TCGA-CM-4747-01 7 98654842 98654842 C T SMURF1 Missense_Mutation p.R130H 0.23 tolerated(0.68) possibly_damaging(0.858) TCGA-CM-4747-01 8 104924348 104924348 G A RIMS2 Missense_Mutation p.R587H 0.55 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CM-4747-01 8 116426339 116426339 G A TRPS1 Missense_Mutation p.T1266M 0.36 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CM-4747-01 8 143694853 143694853 G A ARC Silent p.S260S 0.22 TCGA-CM-4747-01 8 59061199 59061199 C A FAM110B 3'UTR 0.11 TCGA-CM-4747-01 8 6605348 6605348 G A AGPAT5 Silent p.T248T 0.34 TCGA-CM-4747-01 8 70536395 70536395 G A SULF1 Missense_Mutation p.A605T 0.18 tolerated(0.28) benign(0.004) TCGA-CM-4747-01 8 77618162 77618162 C T ZFHX4 Silent p.I613I 0.11 TCGA-CM-4747-01 8 90937807 90937807 T G OSGIN2 3'UTR 0.15 TCGA-CM-4747-01 8 97311998 97311998 A G PTDSS1 Missense_Mutation p.N226S 0.09 deleterious(0.02) benign(0.372) TCGA-CM-4747-01 9 131483567 131483567 G A ZDHHC12 Nonsense_Mutation p.R233* 0.43 TCGA-CM-4747-01 9 138676681 138676681 C T KCNT1 Silent p.A1034A 0.19 TCGA-CM-4747-01 9 34835491 34835491 G A FAM205B RNA 0.24 TCGA-CM-4747-01 9 84606695 84606695 C A SPATA31D1 Nonsense_Mutation p.S437* 0.52 TCGA-CM-4747-01 X 100104798 100104798 T C NOX1 Missense_Mutation p.K420R 0.38 tolerated(0.32) possibly_damaging(0.651) TCGA-CM-4747-01 X 103268107 103268107 C A H2BFWT Silent p.L42L 0.17 TCGA-CM-4747-01 X 1544460 1544460 C A ASMTL Missense_Mutation p.D340Y 0.22 deleterious(0) probably_damaging(0.945) TCGA-CM-4747-01 X 44929142 44929142 C T KDM6A Missense_Mutation p.P748S 0.24 tolerated(1) benign(0.001) TCGA-CM-4747-01 X 47990773 47990773 C T SPACA5B Silent p.T92T 0.39 TCGA-CM-4748-01 10 124895883 124895883 C T HMX3 Missense_Mutation p.P106L 0.29 deleterious(0) possibly_damaging(0.477) TCGA-CM-4748-01 11 4609072 4609072 G T OR52I2 Missense_Mutation p.D344Y 0.52 tolerated(0.08) benign(0.002) TCGA-CM-4748-01 11 55406075 55406075 T C OR4P4 Missense_Mutation p.V81A 0.10 tolerated(0.75) benign(0.002) TCGA-CM-4748-01 11 6422860 6422860 G A APBB1 Missense_Mutation p.R481C 0.31 deleterious(0) possibly_damaging(0.644) TCGA-CM-4748-01 12 121134313 121134313 T C MLEC Missense_Mutation p.F282L 0.08 deleterious(0) probably_damaging(0.977) TCGA-CM-4748-01 12 12874387 12874387 T C CDKN1B 3'UTR 0.38 TCGA-CM-4748-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.33 deleterious(0) benign(0.361) TCGA-CM-4748-01 12 83289973 83289973 A G TMTC2 Missense_Mutation p.N344S 0.11 tolerated(0.33) benign(0.075) TCGA-CM-4748-01 14 75513078 75513078 C A MLH3 Splice_Site p.X1094_splice 0.30 TCGA-CM-4748-01 15 29397652 29397652 G A APBA2 Missense_Mutation p.G532D 0.29 deleterious(0) probably_damaging(0.963) TCGA-CM-4748-01 15 78466728 78466728 T C ACSBG1 Missense_Mutation p.K614R 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-CM-4748-01 16 18844390 18844390 G A SMG1 Silent p.D2888D 0.23 TCGA-CM-4748-01 16 2149734 2149734 C T PKD1 Missense_Mutation p.D3321N 0.27 benign(0.066) TCGA-CM-4748-01 16 48265878 48265878 A - ABCC11 5'UTR 0.26 TCGA-CM-4748-01 16 67913659 67913659 T G EDC4 Silent p.P601P 0.20 TCGA-CM-4748-01 17 11583092 11583092 G A DNAH9 Silent p.A1124A 0.22 TCGA-CM-4748-01 17 37583956 37583956 T C MED1 Missense_Mutation p.N246S 0.16 tolerated(0.12) benign(0.164) TCGA-CM-4748-01 17 43005476 43005476 A G KIF18B Missense_Mutation p.S732P 0.10 tolerated(0.07) possibly_damaging(0.857) TCGA-CM-4748-01 17 6023810 6023810 C T WSCD1 Silent p.C519C 0.28 TCGA-CM-4748-01 17 70117710 70117711 - T SOX9 Frame_Shift_Ins p.K61Efs*191 0.27 TCGA-CM-4748-01 17 70117953 70117953 A G SOX9 Missense_Mutation p.K141E 0.29 deleterious(0) benign(0.237) TCGA-CM-4748-01 17 8017841 8017841 G A ALOXE3 Missense_Mutation p.A346V 0.49 tolerated(0.57) benign(0.004) TCGA-CM-4748-01 19 10292722 10292722 C A DNMT1 Nonsense_Mutation p.E38* 0.32 TCGA-CM-4748-01 19 10828933 10828933 G T DNM2 Silent p.G5G 0.44 TCGA-CM-4748-01 19 16989490 16989490 C T SIN3B Silent p.P1147P 0.59 TCGA-CM-4748-01 19 22154815 22154815 G T ZNF208 Silent p.G1007G 0.28 TCGA-CM-4748-01 19 22847042 22847042 C A ZNF492 Missense_Mutation p.H191N 0.38 deleterious(0.01) possibly_damaging(0.868) TCGA-CM-4748-01 19 36386993 36386993 G A NFKBID Silent p.N165N 0.21 TCGA-CM-4748-01 19 55669006 55669006 G A TNNI3 5'UTR 0.18 TCGA-CM-4748-01 19 58438835 58438835 G T ZNF418 Silent p.S238S 0.29 TCGA-CM-4748-01 1 109793324 109793324 C T CELSR2 Missense_Mutation p.P208L 0.36 deleterious(0.02) possibly_damaging(0.85) TCGA-CM-4748-01 1 154461587 154461587 C T SHE Missense_Mutation p.A322T 0.08 deleterious(0.01) benign(0.439) TCGA-CM-4748-01 1 16344660 16344660 G A HSPB7 5'UTR 0.30 TCGA-CM-4748-01 1 17747266 17747268 ATC - RCC2 In_Frame_Del p.M267del 0.34 TCGA-CM-4748-01 1 220197739 220197739 C T EPRS Silent p.S270S 0.40 TCGA-CM-4748-01 1 37270752 37270752 G A GRIK3 Missense_Mutation p.R801W 0.32 deleterious(0) possibly_damaging(0.882) TCGA-CM-4748-01 1 38049496 38049496 G C GNL2 Missense_Mutation p.S203C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CM-4748-01 1 40124929 40124929 T C NT5C1A Missense_Mutation p.H324R 0.10 deleterious(0) probably_damaging(1) TCGA-CM-4748-01 1 43395436 43395436 C T SLC2A1 Missense_Mutation p.R232H 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-CM-4748-01 1 57420383 57420383 C T C8B Nonsense_Mutation p.W170* 0.37 TCGA-CM-4748-01 1 84679951 84679951 C A PRKACB Missense_Mutation p.T341N 0.28 tolerated(1) benign(0) TCGA-CM-4748-01 20 11904101 11904101 C T BTBD3 Silent p.P452P 0.37 TCGA-CM-4748-01 20 2637610 2637610 G A NOP56 Intron 0.21 TCGA-CM-4748-01 20 49626754 49626754 C T KCNG1 Missense_Mutation p.R41H 0.33 tolerated(0.06) benign(0.186) TCGA-CM-4748-01 21 32185323 32185323 C A KRTAP8-1 3'UTR 0.29 TCGA-CM-4748-01 22 22599417 22599417 A G VPREB1 Missense_Mutation p.T36A 0.24 tolerated(0.05) benign(0.056) TCGA-CM-4748-01 2 103119992 103119992 G A SLC9A4 Missense_Mutation p.R269Q 0.35 tolerated(0.14) probably_damaging(0.999) TCGA-CM-4748-01 2 231157489 231157489 C T SP140 Nonsense_Mutation p.R652* 0.46 TCGA-CM-4748-01 2 27279612 27279612 A G AGBL5 Missense_Mutation p.E496G 0.08 deleterious(0) probably_damaging(0.996) TCGA-CM-4748-01 2 48809319 48809319 G A STON1-GTF2A1L Missense_Mutation p.R516H 0.07 deleterious(0) probably_damaging(1) TCGA-CM-4748-01 2 74710089 74710089 T G CCDC142 5'UTR 0.38 TCGA-CM-4748-01 2 86389199 86389199 C A IMMT Missense_Mutation p.A266S 0.31 tolerated(0.89) benign(0.002) TCGA-CM-4748-01 2 90122040 90122040 C A IGKV1D-17 Silent p.G86G 0.27 TCGA-CM-4748-01 3 101284028 101284028 T G TRMT10C Missense_Mutation p.Y135D 0.36 deleterious(0) probably_damaging(0.91) TCGA-CM-4748-01 3 101384465 101384465 G A ZBTB11 Silent p.G322G 0.34 TCGA-CM-4748-01 3 119892271 119892271 C T GPR156 Missense_Mutation p.R327H 0.29 tolerated(1) benign(0.002) TCGA-CM-4748-01 3 141905308 141905308 A G GK5 Missense_Mutation p.F223L 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-CM-4748-01 3 147128434 147128434 G A ZIC1 Missense_Mutation p.G179S 0.12 tolerated(0.65) benign(0.032) TCGA-CM-4748-01 3 148917552 148917552 T C CP Missense_Mutation p.N483S 0.31 tolerated(1) benign(0) TCGA-CM-4748-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.39 deleterious(0.02) probably_damaging(0.959) TCGA-CM-4748-01 3 196654701 196654701 A - SENP5 Frame_Shift_Del p.N688Ifs*39 0.12 TCGA-CM-4748-01 3 3144359 3144359 G A IL5RA Silent p.D76D 0.07 TCGA-CM-4748-01 4 57356796 57356796 C T SRP72 Missense_Mutation p.P496L 0.22 deleterious(0) possibly_damaging(0.864) TCGA-CM-4748-01 4 77055508 77055508 C A NUP54 Missense_Mutation p.G177V 0.29 deleterious(0) probably_damaging(0.999) TCGA-CM-4748-01 5 1221331 1221331 G A SLC6A19 Missense_Mutation p.R535H 0.56 deleterious(0.03) probably_damaging(0.997) TCGA-CM-4748-01 5 140480850 140480850 C T PCDHB3 Missense_Mutation p.P206L 0.24 deleterious_low_confidence(0.01) benign(0.088) TCGA-CM-4748-01 5 150603578 150603578 C T CCDC69 5'UTR 0.50 TCGA-CM-4748-01 5 169469081 169469081 G A DOCK2 Missense_Mutation p.R1274Q 0.08 tolerated(0.28) benign(0.109) TCGA-CM-4748-01 5 172662261 172662261 G A NKX2-5 5'UTR 0.31 TCGA-CM-4748-01 5 63803625 63803625 C T RGS7BP Missense_Mutation p.R85W 0.35 deleterious(0) possibly_damaging(0.835) TCGA-CM-4748-01 5 79030549 79030549 G A CMYA5 Silent p.L1987L 0.11 TCGA-CM-4748-01 6 160906847 160906847 G A LPAL2 Splice_Site 0.38 TCGA-CM-4748-01 6 27839712 27839712 C G HIST1H3I Missense_Mutation p.A128P 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-CM-4748-01 6 292560 292560 G C DUSP22 Missense_Mutation p.K7N 0.14 deleterious(0.01) benign(0.054) TCGA-CM-4748-01 6 37336650 37336650 G C RNF8 Missense_Mutation p.E211Q 0.07 tolerated(0.24) benign(0.035) TCGA-CM-4748-01 6 3850072 3850072 C T FAM50B Silent p.R9R 0.27 TCGA-CM-4748-01 6 53762155 53762155 C T LRRC1 Nonsense_Mutation p.Q214* 0.15 TCGA-CM-4748-01 6 71568947 71568947 C T B3GAT2 3'UTR 0.39 TCGA-CM-4748-01 6 94120673 94120673 G A EPHA7 Silent p.Y126Y 0.26 TCGA-CM-4748-01 7 151949075 151949075 T C KMT2C Missense_Mutation p.M524V 0.16 benign(0.01) TCGA-CM-4748-01 7 6064398 6064398 T G EIF2AK1 Missense_Mutation p.Q600P 0.33 deleterious(0) probably_damaging(0.987) TCGA-CM-4748-01 7 72742349 72742349 G A FKBP6 5'Flank 0.41 TCGA-CM-4748-01 7 75615368 75615368 C T POR Silent p.S599S 0.38 TCGA-CM-4748-01 7 76828712 76828712 T G FGL2 Missense_Mutation p.L133F 0.41 deleterious(0.05) possibly_damaging(0.897) TCGA-CM-4748-01 7 95906596 95906596 T A SLC25A13 Missense_Mutation p.T42S 0.30 tolerated(0.78) benign(0) TCGA-CM-4748-01 7 96639217 96639217 G A DLX6 Missense_Mutation p.R247H 0.29 tolerated(0.21) probably_damaging(0.938) TCGA-CM-4748-01 8 128428549 128428549 C T POU5F1B Silent p.L146L 0.18 TCGA-CM-4748-01 8 37695287 37695287 G A GPR124 Missense_Mutation p.V697I 0.33 tolerated(0.31) benign(0.035) TCGA-CM-4748-01 8 67355047 67355047 C G ADHFE1 Missense_Mutation p.P38A 0.10 tolerated(0.35) benign(0.001) TCGA-CM-4748-01 8 75227165 75227165 T C JPH1 Missense_Mutation p.D357G 0.31 deleterious(0) possibly_damaging(0.821) TCGA-CM-4748-01 9 125562773 125562773 C T OR1K1 Silent p.Y124Y 0.34 TCGA-CM-4748-01 9 85611959 85611959 G T RASEF Missense_Mutation p.L630I 0.35 deleterious(0.03) benign(0.315) TCGA-CM-4748-01 X 111697859 111697859 A G ZCCHC16 5'UTR 0.67 TCGA-CM-4748-01 X 123540212 123540212 A G TENM1 Missense_Mutation p.S1704P 0.09 deleterious(0.01) benign(0.048) TCGA-CM-4748-01 X 127185566 127185566 A G ACTRT1 Missense_Mutation p.L207P 0.11 deleterious(0.03) probably_damaging(0.973) TCGA-CM-4748-01 X 2184836 2184836 C T DHRSX Missense_Mutation p.V181I 0.08 deleterious(0.03) possibly_damaging(0.595) TCGA-CM-4748-01 X 47045500 47045500 G T RBM10 Nonsense_Mutation p.E823* 0.65 TCGA-CM-4748-01 X 48458085 48458085 A G WDR13 Missense_Mutation p.D168G 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-CM-4748-01 X 74599020 74599020 G T ZDHHC15 Silent p.G327G 0.47 TCGA-CM-4750-01 10 73051363 73051363 C T UNC5B Missense_Mutation p.T490M 0.56 tolerated(0.1) benign(0.011) TCGA-CM-4750-01 11 105967733 105967733 A G AASDHPPT 3'UTR 0.21 TCGA-CM-4750-01 11 108788727 108788727 A C DDX10 Missense_Mutation p.D811A 0.36 deleterious(0.04) benign(0.036) TCGA-CM-4750-01 11 2356619 2356619 G A CD81-AS1 Intron 0.56 TCGA-CM-4750-01 11 26581297 26581297 T A ANO3 Missense_Mutation p.V473D 0.47 deleterious(0) probably_damaging(1) TCGA-CM-4750-01 11 284291 284291 G A NLRP6 Missense_Mutation p.A755T 0.36 tolerated(0.26) possibly_damaging(0.728) TCGA-CM-4750-01 11 33124662 33124662 A C CSTF3 Silent p.R218R 0.36 TCGA-CM-4750-01 11 46748107 46748107 G A F2 Missense_Mutation p.E312K 0.19 tolerated(0.66) benign(0.001) TCGA-CM-4750-01 11 5012666 5012666 T A MMP26 Missense_Mutation p.S179T 0.26 tolerated(0.17) possibly_damaging(0.596) TCGA-CM-4750-01 11 6432527 6432527 G A APBB1 Silent p.H17H 0.15 TCGA-CM-4750-01 11 67259647 67259647 C T PITPNM1 Missense_Mutation p.V1198M 0.38 tolerated(0.06) benign(0.346) TCGA-CM-4750-01 12 10167119 10167119 G A CLEC12B Intron 0.43 TCGA-CM-4750-01 12 109967721 109967721 A G UBE3B Missense_Mutation p.H885R 0.30 deleterious(0.01) possibly_damaging(0.897) TCGA-CM-4750-01 12 111757997 111757997 G A CUX2 Silent p.P728P 0.53 TCGA-CM-4750-01 12 117696209 117696209 C A NOS1 Nonsense_Mutation p.E842* 0.35 TCGA-CM-4750-01 12 123057809 123057809 G T KNTC1 Nonsense_Mutation p.E754* 0.40 TCGA-CM-4750-01 12 49361758 49361758 G A WNT10B Nonsense_Mutation p.R228* 0.44 TCGA-CM-4750-01 12 93803457 93803457 T C UBE2N 3'UTR 0.53 TCGA-CM-4750-01 13 109793428 109793428 C T MYO16 Missense_Mutation p.P1601L 0.25 tolerated_low_confidence(0.72) benign(0) TCGA-CM-4750-01 13 36167443 36167443 C A NBEA Intron 0.53 TCGA-CM-4750-01 13 43174902 43174902 C T TNFSF11 Silent p.I134I 0.46 TCGA-CM-4750-01 13 46357553 46357553 C T SIAH3 Missense_Mutation p.A259T 0.12 tolerated(0.57) benign(0.005) TCGA-CM-4750-01 13 96622423 96622423 T A UGGT2 Missense_Mutation p.L426F 0.15 deleterious(0) probably_damaging(0.953) TCGA-CM-4750-01 14 101349080 101349080 G A RTL1 Silent p.T682T 0.06 TCGA-CM-4750-01 14 102547948 102547948 G A HSP90AA1 3'UTR 0.18 TCGA-CM-4750-01 14 105411669 105411669 G A AHNAK2 Silent p.D3373D 0.27 TCGA-CM-4750-01 14 23845001 23845001 A C IL25 Missense_Mutation p.K149T 0.07 tolerated(0.54) benign(0.004) TCGA-CM-4750-01 14 75321976 75321976 G T PROX2 Missense_Mutation p.S319R 0.14 tolerated(0.06) benign(0.026) TCGA-CM-4750-01 14 91744429 91744429 T C CCDC88C Missense_Mutation p.E1632G 0.11 deleterious(0.01) possibly_damaging(0.589) TCGA-CM-4750-01 14 94087998 94087998 G A UNC79 Silent p.T1296T 0.68 TCGA-CM-4750-01 15 25940137 25940137 C T ATP10A Missense_Mutation p.V973M 0.47 deleterious(0.01) probably_damaging(0.96) TCGA-CM-4750-01 15 43020908 43020908 C T CDAN1 Missense_Mutation p.E916K 0.40 tolerated(0.11) probably_damaging(0.969) TCGA-CM-4750-01 15 53994478 53994478 A G WDR72 Silent p.S474S 0.08 TCGA-CM-4750-01 15 91551122 91551122 T C VPS33B Missense_Mutation p.E159G 0.43 tolerated(0.21) benign(0.023) TCGA-CM-4750-01 16 19883583 19883583 G A GPRC5B Silent p.Y195Y 0.20 TCGA-CM-4750-01 17 10427956 10427956 G A MYH2 Missense_Mutation p.R1668W 0.70 deleterious(0) probably_damaging(0.98) TCGA-CM-4750-01 17 7577565 7577565 T C TP53 Missense_Mutation p.N239S 0.69 deleterious(0.03) probably_damaging(0.999) TCGA-CM-4750-01 17 78163628 78163628 C T CARD14 Missense_Mutation p.S307L 0.08 tolerated(0.06) benign(0.435) TCGA-CM-4750-01 18 14851949 14851949 G T ANKRD30B Missense_Mutation p.V1217F 0.30 tolerated(1) probably_damaging(0.917) TCGA-CM-4750-01 18 32886795 32886795 A C ZNF271 RNA 0.39 TCGA-CM-4750-01 18 74622059 74622059 C T ZNF236 Missense_Mutation p.H861Y 0.24 deleterious(0.02) benign(0.056) TCGA-CM-4750-01 19 10335009 10335009 C T S1PR2 Silent p.V191V 0.08 TCGA-CM-4750-01 19 10795526 10795526 A C ILF3 Intron 0.42 TCGA-CM-4750-01 19 12807267 12807267 G A FBXW9 Silent p.S43S 0.14 TCGA-CM-4750-01 19 16638987 16638987 G A CHERP Silent p.A403A 0.35 TCGA-CM-4750-01 19 2213966 2213966 G A DOT1L Missense_Mutation p.R593H 0.58 deleterious(0) probably_damaging(0.993) TCGA-CM-4750-01 19 3747900 3747923 GGCGAGGGCGGCGCGTACACGGAT - TJP3 In_Frame_Del p.G823_G830del 0.38 TCGA-CM-4750-01 19 41128462 41128462 C A LTBP4 Missense_Mutation p.A1191E 0.63 tolerated(0.1) probably_damaging(0.982) TCGA-CM-4750-01 19 50771511 50771511 C T MYH14 Missense_Mutation p.R974C 0.28 deleterious(0) probably_damaging(0.954) TCGA-CM-4750-01 19 52249535 52249535 C T FPR1 Missense_Mutation p.R238H 0.12 tolerated(0.1) possibly_damaging(0.597) TCGA-CM-4750-01 19 53912513 53912514 - AA ZNF765 3'UTR 0.15 TCGA-CM-4750-01 19 54261513 54261513 C T MIR1283-2 RNA 0.19 TCGA-CM-4750-01 19 58806727 58806727 C T ZNF8 Missense_Mutation p.P518L 0.39 tolerated(0.29) benign(0.004) TCGA-CM-4750-01 1 161128308 161128308 G C UFC1 3'UTR 0.15 TCGA-CM-4750-01 1 169790866 169790866 G - C1orf112 Frame_Shift_Del p.R250Lfs*53 0.25 TCGA-CM-4750-01 1 207242835 207242835 G T PFKFB2 Missense_Mutation p.D352Y 0.06 probably_damaging(1) TCGA-CM-4750-01 1 225611612 225611614 CCT - LBR Splice_Site p.X55_splice 0.12 TCGA-CM-4750-01 1 237802461 237802461 C T RYR2 Nonsense_Mutation p.R2359* 0.10 TCGA-CM-4750-01 1 245852073 245852073 C T KIF26B Missense_Mutation p.R1930W 0.29 deleterious(0) unknown(0) TCGA-CM-4750-01 1 70503887 70503887 G T LRRC7 Missense_Mutation p.D756Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-CM-4750-01 20 1961196 1961196 G A PDYN Missense_Mutation p.R180C 0.65 deleterious(0) probably_damaging(1) TCGA-CM-4750-01 20 47989612 47989612 C A KCNB1 Nonsense_Mutation p.E829* 0.62 TCGA-CM-4750-01 20 49575567 49575567 A G MOCS3 Missense_Mutation p.Y63C 0.07 deleterious(0.04) probably_damaging(0.913) TCGA-CM-4750-01 20 61981035 61981035 G A CHRNA4 Silent p.D576D 0.11 TCGA-CM-4750-01 20 62494098 62494098 G A ABHD16B Missense_Mutation p.R402H 0.07 tolerated(0.11) benign(0.006) TCGA-CM-4750-01 22 32194607 32194607 G T DEPDC5 Missense_Mutation p.G304V 0.33 deleterious(0) probably_damaging(1) TCGA-CM-4750-01 22 36593656 36593656 C A APOL4 Intron 0.42 TCGA-CM-4750-01 22 38958308 38958308 C T DMC1 Missense_Mutation p.G104R 0.25 deleterious(0) benign(0.408) TCGA-CM-4750-01 2 114196631 114196631 A G CBWD2 Intron 0.58 TCGA-CM-4750-01 2 179584003 179584003 G A TTN Silent p.N8038N 0.11 TCGA-CM-4750-01 2 179612192 179612192 C A TTN Intron 0.36 TCGA-CM-4750-01 2 185802564 185802564 G A ZNF804A Missense_Mutation p.R814Q 0.17 deleterious(0) probably_damaging(0.953) TCGA-CM-4750-01 2 241659228 241659228 G A KIF1A Missense_Mutation p.R1662C 0.26 tolerated(0.18) benign(0.031) TCGA-CM-4750-01 2 47136170 47136170 G A MCFD2 Silent p.H47H 0.19 TCGA-CM-4750-01 2 53927642 53927642 T C ASB3 Missense_Mutation p.N370S 0.15 tolerated(0.48) benign(0.155) TCGA-CM-4750-01 2 55138156 55138156 C T EML6 Missense_Mutation p.R1159W 0.06 deleterious(0) probably_damaging(0.987) TCGA-CM-4750-01 2 74076541 74076541 C A STAMBP Missense_Mutation p.P265Q 0.60 tolerated(0.44) benign(0.004) TCGA-CM-4750-01 2 8931266 8931266 G A KIDINS220 Silent p.T455T 0.28 TCGA-CM-4750-01 3 10400457 10400457 G A ATP2B2 Missense_Mutation p.P685L 0.41 tolerated(0.06) probably_damaging(1) TCGA-CM-4750-01 3 12641654 12641654 T G RAF1 Missense_Mutation p.K329N 0.09 tolerated(0.08) benign(0.15) TCGA-CM-4750-01 3 130424571 130424571 C T PIK3R4 Silent p.P922P 0.62 TCGA-CM-4750-01 3 137743483 137743483 C A CLDN18 Silent p.A140A 0.44 TCGA-CM-4750-01 3 160783286 160783286 G A PPM1L Missense_Mutation p.A224T 0.23 tolerated(0.12) possibly_damaging(0.545) TCGA-CM-4750-01 3 6903489 6903489 C T GRM7 Silent p.N138N 0.44 TCGA-CM-4750-01 4 153251907 153251907 G A FBXW7 Nonsense_Mutation p.R367* 0.26 TCGA-CM-4750-01 4 153332841 153332847 CCTCTAC - FBXW7 Frame_Shift_Del p.V37Rfs*24 0.37 TCGA-CM-4750-01 4 25262208 25262208 C T PI4K2B Missense_Mutation p.H325Y 0.51 tolerated(0.15) benign(0.001) TCGA-CM-4750-01 4 62758497 62758497 C T LPHN3 Missense_Mutation p.T467I 0.07 tolerated(0.16) benign(0.342) TCGA-CM-4750-01 5 135567131 135567131 C T TRPC7 Missense_Mutation p.V651I 0.52 tolerated(0.28) benign(0.021) TCGA-CM-4750-01 5 140256845 140256845 G A PCDHA12 Silent p.A596A 0.24 TCGA-CM-4750-01 5 149240333 149240333 A T PDE6A 3'UTR 0.67 TCGA-CM-4750-01 5 156381443 156381443 C T TIMD4 Missense_Mutation p.R128H 0.32 tolerated(0.2) benign(0.051) TCGA-CM-4750-01 5 159776649 159776649 G T C1QTNF2 Silent p.P173P 0.37 TCGA-CM-4750-01 5 176018219 176018219 G A CDHR2 Missense_Mutation p.R1183Q 0.17 deleterious(0) probably_damaging(0.919) TCGA-CM-4750-01 5 24487988 24487988 C A CDH10 Missense_Mutation p.R717S 0.33 deleterious(0) probably_damaging(0.966) TCGA-CM-4750-01 5 39306791 39306791 G A C9 Silent p.T448T 0.27 TCGA-CM-4750-01 5 58120962 58120962 C T RAB3C Nonsense_Mutation p.R157* 0.31 TCGA-CM-4750-01 5 79361271 79361271 G A THBS4 Missense_Mutation p.V389I 0.20 tolerated(0.15) benign(0.385) TCGA-CM-4750-01 6 100390823 100390823 A C MCHR2 Splice_Site p.X196_splice 0.16 TCGA-CM-4750-01 6 117869255 117869255 G A DCBLD1 Intron 0.26 TCGA-CM-4750-01 6 119296340 119296340 G T FAM184A Missense_Mutation p.Q873K 0.43 tolerated(0.15) benign(0.155) TCGA-CM-4750-01 6 119345645 119345645 A G FAM184A Missense_Mutation p.F165L 0.44 deleterious(0) probably_damaging(0.99) TCGA-CM-4750-01 6 138599627 138599627 T C KIAA1244 Missense_Mutation p.L723P 0.10 tolerated(0.18) possibly_damaging(0.886) TCGA-CM-4750-01 6 143092524 143092524 C T HIVEP2 Missense_Mutation p.G1118R 0.33 deleterious(0.04) benign(0.029) TCGA-CM-4750-01 6 15512539 15512539 A T JARID2 Missense_Mutation p.K1018I 0.47 deleterious(0.01) probably_damaging(0.938) TCGA-CM-4750-01 6 170121105 170121105 G T PHF10 Missense_Mutation p.L64I 0.22 tolerated(0.13) benign(0.115) TCGA-CM-4750-01 6 31504426 31504426 T C DDX39B Missense_Mutation p.K156R 0.08 tolerated(0.08) benign(0.009) TCGA-CM-4750-01 6 66205113 66205113 G C EYS Missense_Mutation p.T64S 0.21 tolerated_low_confidence(0.44) possibly_damaging(0.833) TCGA-CM-4750-01 7 140508796 140508796 C T BRAF Splice_Site p.X169_splice 0.41 TCGA-CM-4750-01 7 151877198 151877198 C T KMT2C Missense_Mutation p.R2388H 0.33 probably_damaging(0.999) TCGA-CM-4750-01 7 5780817 5780817 C T RNF216 Silent p.P277P 0.31 TCGA-CM-4750-01 8 113349883 113349883 G T CSMD3 Missense_Mutation p.Q2244K 0.25 deleterious(0.03) possibly_damaging(0.565) TCGA-CM-4750-01 8 144885885 144885885 G A SCRIB Missense_Mutation p.R1116C 0.23 probably_damaging(0.988) TCGA-CM-4750-01 8 6357393 6357393 G A MCPH1 Silent p.L719L 0.18 TCGA-CM-4750-01 9 129930978 129930978 C T RALGPS1 Missense_Mutation p.H257Y 0.32 deleterious(0.04) benign(0.103) TCGA-CM-4750-01 9 88293312 88293312 T C AGTPBP1 Missense_Mutation p.N76S 0.07 tolerated(0.52) possibly_damaging(0.495) TCGA-CM-4750-01 X 120008941 120008941 G T CT47B1 Nonsense_Mutation p.S195* 0.16 TCGA-CM-4750-01 X 140993565 140993565 G C MAGEC1 Missense_Mutation p.Q125H 0.06 deleterious_low_confidence(0.01) benign(0.216) TCGA-CM-4750-01 X 153991063 153991063 G T DKC1 5'UTR 0.69 TCGA-CM-4750-01 X 154158253 154158253 C T F8 Missense_Mutation p.R1271K 0.09 tolerated(0.27) benign(0.005) TCGA-CM-4750-01 X 16657299 16657299 G T CTPS2 Missense_Mutation p.T455N 0.09 deleterious(0) probably_damaging(0.993) TCGA-CM-4750-01 X 36117936 36117936 G A CHDC2 Missense_Mutation p.M264I 0.22 tolerated(0.19) benign(0.043) TCGA-CM-4750-01 X 77224823 77224823 C A PGAM4 Missense_Mutation p.A105S 0.13 tolerated(0.05) benign(0.366) TCGA-CM-4751-01 10 105762879 105762879 C T SLK Missense_Mutation p.T648I 0.21 tolerated(0.27) benign(0.004) TCGA-CM-4751-01 10 118439229 118439229 T C HSPA12A Silent p.K357K 0.05 TCGA-CM-4751-01 10 134942687 134942687 G A GPR123 Missense_Mutation p.R452H 0.21 tolerated(1) benign(0.002) TCGA-CM-4751-01 10 25886815 25886815 A G GPR158 Missense_Mutation p.I754V 0.23 deleterious(0.01) benign(0.103) TCGA-CM-4751-01 10 89120919 89120919 C T NUTM2D Missense_Mutation p.A283V 0.19 deleterious(0) probably_damaging(0.997) TCGA-CM-4751-01 11 2441519 2441519 G A TRPM5 Silent p.G194G 0.29 TCGA-CM-4751-01 11 5841573 5841573 G C OR52N2 Missense_Mutation p.G3A 0.25 tolerated(0.71) benign(0.002) TCGA-CM-4751-01 11 64815162 64815162 G A NAALADL1 Missense_Mutation p.R489W 0.27 deleterious(0) possibly_damaging(0.849) TCGA-CM-4751-01 11 65664296 65664296 C T FOSL1 Missense_Mutation p.R94Q 0.14 deleterious(0) possibly_damaging(0.81) TCGA-CM-4751-01 11 67067028 67067028 G C ANKRD13D Missense_Mutation p.V276L 0.34 deleterious(0.02) benign(0.409) TCGA-CM-4751-01 11 77054927 77054927 A C PAK1 Missense_Mutation p.I312S 0.17 deleterious(0) probably_damaging(0.909) TCGA-CM-4751-01 12 11420836 11420836 C T PRB3 Missense_Mutation p.R116H 0.17 tolerated(0.12) unknown(0) TCGA-CM-4751-01 12 122247933 122247933 G C SETD1B Missense_Mutation p.G361A 0.19 possibly_damaging(0.822) TCGA-CM-4751-01 12 124971104 124971104 A C NCOR2 Missense_Mutation p.L39R 0.30 unknown(0) TCGA-CM-4751-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.23 deleterious(0) benign(0.361) TCGA-CM-4751-01 12 86373108 86373108 C A MGAT4C Nonsense_Mutation p.E466* 0.19 TCGA-CM-4751-01 12 94761962 94761962 T C CCDC41 Missense_Mutation p.N355S 0.27 tolerated(0.41) benign(0.041) TCGA-CM-4751-01 13 28623626 28623626 G A FLT3 Missense_Mutation p.R311W 0.30 deleterious(0) probably_damaging(1) TCGA-CM-4751-01 13 33685016 33685016 C T STARD13 Missense_Mutation p.R879H 0.30 tolerated(0.3) benign(0.005) TCGA-CM-4751-01 13 36805324 36805324 C A CCDC169 Intron 0.18 TCGA-CM-4751-01 14 104136621 104136621 G C KLC1 Splice_Site p.X329_splice 0.15 TCGA-CM-4751-01 14 104174880 104174880 G A XRCC3 Missense_Mutation p.R58W 0.18 deleterious(0.01) benign(0.192) TCGA-CM-4751-01 14 106053892 106053892 G A IGHA2 Silent p.S209S 0.21 TCGA-CM-4751-01 14 27066567 27066567 G A NOVA1 Missense_Mutation p.R26W 0.33 deleterious(0) unknown(0) TCGA-CM-4751-01 14 86092825 86092825 T A FLRT2 3'UTR 0.25 TCGA-CM-4751-01 14 91763809 91763809 T C CCDC88C Missense_Mutation p.K1269R 0.14 tolerated(0.49) benign(0.049) TCGA-CM-4751-01 15 45404125 45404125 G A DUOX2 Silent p.S118S 0.05 TCGA-CM-4751-01 15 68606170 68606170 G A ITGA11 Silent p.N943N 0.33 TCGA-CM-4751-01 15 90208821 90208821 T C PLIN1 Missense_Mutation p.K521R 0.15 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CM-4751-01 16 20554459 20554459 G A ACSM2B Silent p.S469S 0.16 TCGA-CM-4751-01 16 23570835 23570835 C T UBFD1 Silent p.P134P 0.23 TCGA-CM-4751-01 16 48134876 48134876 A G ABCC12 Missense_Mutation p.V982A 0.21 tolerated(0.05) benign(0.145) TCGA-CM-4751-01 16 51171313 51171313 C T SALL1 Missense_Mutation p.D1229N 0.20 deleterious(0) possibly_damaging(0.588) TCGA-CM-4751-01 16 54966376 54966376 G A IRX5 Intron 0.31 TCGA-CM-4751-01 16 55729233 55729233 G A SLC6A2 Missense_Mutation p.V356I 0.19 tolerated(0.43) benign(0.001) TCGA-CM-4751-01 16 69988325 69988325 G A CLEC18A Missense_Mutation p.R102H 0.26 tolerated(0.44) benign(0.001) TCGA-CM-4751-01 16 74511295 74511295 T C GLG1 Missense_Mutation p.Q655R 0.23 deleterious(0.03) probably_damaging(0.968) TCGA-CM-4751-01 17 40010477 40010477 A C KLHL11 Missense_Mutation p.F548V 0.26 tolerated(0.5) benign(0) TCGA-CM-4751-01 17 56435477 56435477 G C RNF43 Missense_Mutation p.R554G 0.38 tolerated_low_confidence(0.07) benign(0.015) TCGA-CM-4751-01 17 63545720 63545721 - A AXIN2 Frame_Shift_Ins p.A292Cfs*10 0.25 TCGA-CM-4751-01 17 70119758 70119759 - GA SOX9 Frame_Shift_Ins p.G256Rfs*24 0.28 TCGA-CM-4751-01 17 74470128 74470128 G A RHBDF2 Missense_Mutation p.H550Y 0.32 tolerated(0.09) possibly_damaging(0.501) TCGA-CM-4751-01 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-4751-01 18 21452994 21452994 C A LAMA3 Intron 0.51 TCGA-CM-4751-01 18 45372031 45372031 T C SMAD2 Intron 0.26 TCGA-CM-4751-01 19 12868912 12868912 T C BEST2 3'UTR 0.20 TCGA-CM-4751-01 19 15760054 15760054 C A CYP4F3 Missense_Mutation p.Q204K 0.17 tolerated(0.07) possibly_damaging(0.616) TCGA-CM-4751-01 19 36218849 36218849 G A KMT2B Missense_Mutation p.R1487H 0.20 benign(0.003) TCGA-CM-4751-01 19 37117865 37117865 G A ZNF382 Missense_Mutation p.D356N 0.28 deleterious(0) probably_damaging(0.998) TCGA-CM-4751-01 19 39667257 39667257 G A PAK4 Missense_Mutation p.A463T 0.13 deleterious(0) probably_damaging(0.998) TCGA-CM-4751-01 19 44890738 44890738 C A ZNF285 Missense_Mutation p.A557S 0.22 tolerated(0.37) benign(0.156) TCGA-CM-4751-01 19 52223035 52223035 G A HAS1 Silent p.A42A 0.29 TCGA-CM-4751-01 19 57803620 57803620 C T ZNF460 3'UTR 0.21 TCGA-CM-4751-01 19 843594 843594 C G PRTN3 Missense_Mutation p.F65L 0.25 deleterious(0) probably_damaging(0.987) TCGA-CM-4751-01 1 171511189 171511189 G A PRRC2C Silent p.K1526K 0.27 TCGA-CM-4751-01 1 222734759 222734759 T C TAF1A Missense_Mutation p.D396G 0.23 deleterious(0.02) benign(0.318) TCGA-CM-4751-01 1 228437814 228437814 G A OBSCN Silent p.S1486S 0.24 TCGA-CM-4751-01 1 26487827 26487827 C T FAM110D Silent p.P15P 0.18 TCGA-CM-4751-01 1 33625513 33625513 G A TRIM62 Silent p.G179G 0.21 TCGA-CM-4751-01 1 35370947 35370947 C T DLGAP3 Missense_Mutation p.R13H 0.20 tolerated_low_confidence(0.25) benign(0.001) TCGA-CM-4751-01 1 35580116 35580116 A G ZMYM1 Silent p.A895A 0.38 TCGA-CM-4751-01 20 10025069 10025069 G A ANKEF1 Missense_Mutation p.A192T 0.17 deleterious(0.02) benign(0.199) TCGA-CM-4751-01 20 31044173 31044173 G A C20orf112 Silent p.S45S 0.25 TCGA-CM-4751-01 20 31672776 31672776 C T BPIFB4 Silent p.Y252Y 0.14 TCGA-CM-4751-01 20 61510689 61510689 G A DIDO1 Missense_Mutation p.R2207W 0.20 possibly_damaging(0.689) TCGA-CM-4751-01 21 35258605 35258605 T C ITSN1 Missense_Mutation p.Y1620H 0.32 deleterious(0) probably_damaging(1) TCGA-CM-4751-01 22 17446145 17446145 C T GAB4 Silent p.P434P 0.25 TCGA-CM-4751-01 22 19029345 19029345 G A DGCR2 Silent p.R378R 0.15 TCGA-CM-4751-01 22 24121575 24121575 C T MMP11 Missense_Mutation p.R104C 0.26 deleterious(0) probably_damaging(1) TCGA-CM-4751-01 22 51018226 51018226 T C CHKB Missense_Mutation p.K321E 0.36 tolerated(0.51) benign(0.001) TCGA-CM-4751-01 2 111542370 111542370 C T ACOXL Missense_Mutation p.A46V 0.24 tolerated(0.79) benign(0.009) TCGA-CM-4751-01 2 162751194 162751194 T C SLC4A10 Silent p.F400F 0.05 TCGA-CM-4751-01 2 177016490 177016490 C T HOXD4 Silent p.G43G 0.27 TCGA-CM-4751-01 2 179545860 179545860 G A TTN Missense_Mutation p.R11096C 0.29 TCGA-CM-4751-01 2 1906993 1906993 G A MYT1L Missense_Mutation p.R629C 0.31 deleterious(0) probably_damaging(0.99) TCGA-CM-4751-01 2 202552078 202552078 C T MPP4 Missense_Mutation p.R99H 0.15 tolerated(0.24) benign(0.005) TCGA-CM-4751-01 2 238443261 238443261 G T MLPH Nonsense_Mutation p.E359* 0.19 TCGA-CM-4751-01 2 241903058 241903058 G A AC104809.3 Missense_Mutation p.R952Q 0.31 tolerated(0.3) benign(0.085) TCGA-CM-4751-01 2 69093687 69093687 C T BMP10 Silent p.P117P 0.18 TCGA-CM-4751-01 2 89384965 89384965 G A IGKV3-15 Missense_Mutation p.T18I 0.24 tolerated(0.09) benign(0.021) TCGA-CM-4751-01 3 107798857 107798857 G A CD47 Silent p.I127I 0.22 TCGA-CM-4751-01 3 112993346 112993346 G A BOC Silent p.T453T 0.26 TCGA-CM-4751-01 3 113955389 113955389 C T ZNF80 Missense_Mutation p.R178Q 0.29 tolerated(0.74) benign(0.064) TCGA-CM-4751-01 3 119135064 119135064 C T ARHGAP31 Missense_Mutation p.R1430W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CM-4751-01 3 128292710 128292711 TT - C3orf27 5'UTR 0.14 TCGA-CM-4751-01 3 140397213 140397213 C T TRIM42 Missense_Mutation p.R48W 0.22 deleterious(0) possibly_damaging(0.614) TCGA-CM-4751-01 3 172835465 172835465 A T SPATA16 Missense_Mutation p.D19E 0.21 tolerated_low_confidence(0.07) possibly_damaging(0.621) TCGA-CM-4751-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.23 tolerated(0.36) benign(0.4) TCGA-CM-4751-01 3 180349312 180349312 A G CCDC39 Missense_Mutation p.V648A 0.15 tolerated(0.73) benign(0.001) TCGA-CM-4751-01 3 37033670 37033670 G A EPM2AIP1 Missense_Mutation p.T300I 0.21 tolerated(0.33) possibly_damaging(0.642) TCGA-CM-4751-01 3 44763241 44763241 C T ZNF502 Missense_Mutation p.T311M 0.31 tolerated(0.11) benign(0.066) TCGA-CM-4751-01 3 50645970 50645970 C T CISH Silent p.P42P 0.27 TCGA-CM-4751-01 3 87289878 87289878 C T CHMP2B Nonsense_Mutation p.R22* 0.24 TCGA-CM-4751-01 4 129783058 129783058 G A JADE1 Missense_Mutation p.R394Q 0.19 tolerated(0.59) benign(0.001) TCGA-CM-4751-01 4 141555254 141555254 C T TBC1D9 Missense_Mutation p.R865H 0.16 tolerated(0.05) possibly_damaging(0.847) TCGA-CM-4751-01 4 158256989 158256989 C T GRIA2 Missense_Mutation p.T478M 0.24 deleterious(0.01) benign(0.273) TCGA-CM-4751-01 4 187540073 187540073 C T FAT1 Missense_Mutation p.R2556Q 0.18 probably_damaging(1) TCGA-CM-4751-01 4 20706422 20706422 T C PACRGL Silent p.P64P 0.25 TCGA-CM-4751-01 4 39276577 39276577 A G WDR19 Missense_Mutation p.R1239G 0.06 deleterious(0) probably_damaging(0.999) TCGA-CM-4751-01 4 56756467 56756467 G A EXOC1 Missense_Mutation p.R485H 0.30 tolerated(0.09) probably_damaging(0.938) TCGA-CM-4751-01 4 85899 85899 T C Z95704.2 RNA 0.26 TCGA-CM-4751-01 5 1246040 1246040 C T SLC6A18 Silent p.P578P 0.24 TCGA-CM-4751-01 5 169310664 169310664 G A FAM196B Missense_Mutation p.S80L 0.19 tolerated(0.07) probably_damaging(0.997) TCGA-CM-4751-01 5 32074218 32074218 G A PDZD2 Silent p.R1002R 0.36 TCGA-CM-4751-01 5 37815942 37815942 G A GDNF Silent p.C166C 0.19 TCGA-CM-4751-01 6 112671740 112671740 A C RFPL4B 3'UTR 0.18 TCGA-CM-4751-01 6 15533607 15533607 G A DTNBP1 Silent p.H177H 0.42 TCGA-CM-4751-01 6 27791998 27791998 G C HIST1H4J Missense_Mutation p.K32N 0.46 tolerated(0.06) possibly_damaging(0.862) TCGA-CM-4751-01 6 29395458 29395458 G T OR11A1 5'UTR 0.41 TCGA-CM-4751-01 6 32805425 32805425 T C TAP2 Missense_Mutation p.E166G 0.05 deleterious(0) possibly_damaging(0.78) TCGA-CM-4751-01 6 35467907 35467907 C T TULP1 Missense_Mutation p.R449H 0.25 deleterious(0) probably_damaging(0.993) TCGA-CM-4751-01 6 46787411 46787411 G A MEP1A Missense_Mutation p.V176M 0.20 deleterious(0) probably_damaging(1) TCGA-CM-4751-01 7 134632281 134632281 G A CALD1 Missense_Mutation p.V519M 0.17 tolerated(0.24) unknown(0) TCGA-CM-4751-01 7 134719210 134719210 A T AGBL3 Nonsense_Mutation p.K290* 0.41 TCGA-CM-4751-01 7 138305861 138305861 C T SVOPL Missense_Mutation p.R428H 0.14 deleterious(0.02) probably_damaging(1) TCGA-CM-4751-01 7 140037111 140037111 C T SLC37A3 Missense_Mutation p.M455I 0.14 tolerated(0.19) benign(0.002) TCGA-CM-4751-01 7 47971583 47971583 G A PKD1L1 Missense_Mutation p.R157W 0.26 tolerated_low_confidence(0.21) benign(0) TCGA-CM-4751-01 7 48319107 48319107 G T ABCA13 Missense_Mutation p.L2772F 0.20 possibly_damaging(0.59) TCGA-CM-4751-01 7 70252278 70252278 C T AUTS2 Nonsense_Mutation p.R798* 0.27 TCGA-CM-4751-01 8 107781837 107781837 G A ABRA Silent p.S194S 0.17 TCGA-CM-4751-01 8 110985016 110985016 T A KCNV1 Missense_Mutation p.R154S 0.25 deleterious(0.02) benign(0.362) TCGA-CM-4751-01 8 143614819 143614819 C T BAI1 Missense_Mutation p.R1188C 0.09 deleterious(0) possibly_damaging(0.689) TCGA-CM-4751-01 8 28196560 28196560 T C PNOC Missense_Mutation p.C44R 0.09 deleterious(0) probably_damaging(0.951) TCGA-CM-4751-01 9 125377845 125377845 G A OR1Q1 Missense_Mutation p.V277M 0.17 tolerated(1) benign(0.007) TCGA-CM-4751-01 9 130674627 130674627 G A ST6GALNAC4 Silent p.P177P 0.18 TCGA-CM-4751-01 9 137777197 137777197 C T FCN2 Silent p.D138D 0.18 TCGA-CM-4751-01 9 138664748 138664748 G A KCNT1 Silent p.S732S 0.23 TCGA-CM-4751-01 9 34371966 34371966 G A KIAA1161 Missense_Mutation p.R292C 0.30 deleterious(0.04) probably_damaging(0.91) TCGA-CM-4751-01 9 73002623 73002623 G A KLF9 3'UTR 0.28 TCGA-CM-4751-01 X 113965848 113965848 G A HTR2C Missense_Mutation p.V61I 0.10 tolerated(0.22) benign(0.002) TCGA-CM-4751-01 X 150348467 150348467 C T GPR50 Missense_Mutation p.R138W 0.49 deleterious(0.03) benign(0.042) TCGA-CM-4752-01 10 102766573 102766573 C T LZTS2 Missense_Mutation p.A553V 0.17 tolerated(0.47) benign(0.281) TCGA-CM-4752-01 10 49376666 49376666 G A FRMPD2 Missense_Mutation p.A1170V 0.51 tolerated(1) benign(0.003) TCGA-CM-4752-01 10 51769908 51769908 G A AGAP6 Missense_Mutation p.V675M 0.17 tolerated(0.13) possibly_damaging(0.701) TCGA-CM-4752-01 10 71139779 71139779 G A HK1 Missense_Mutation p.R402H 0.05 deleterious(0.02) benign(0.213) TCGA-CM-4752-01 10 93952355 93952355 C T CPEB3 Silent p.S348S 0.21 TCGA-CM-4752-01 11 125542278 125542278 G A ACRV1 3'UTR 0.27 TCGA-CM-4752-01 11 125765138 125765138 G A PUS3 Missense_Mutation p.P309S 0.19 deleterious(0.02) possibly_damaging(0.74) TCGA-CM-4752-01 11 27149113 27149113 A G BBOX1 3'UTR 0.08 TCGA-CM-4752-01 11 3661162 3661162 C T ART5 Missense_Mutation p.R166H 0.14 tolerated(0.37) benign(0.032) TCGA-CM-4752-01 11 55371343 55371343 G T OR4C11 Silent p.P169P 0.04 TCGA-CM-4752-01 11 61503815 61503815 G A DAGLA Missense_Mutation p.R455Q 0.12 tolerated(0.28) probably_damaging(0.994) TCGA-CM-4752-01 11 72408369 72408369 G A ARAP1 Silent p.C984C 0.34 TCGA-CM-4752-01 11 75431106 75431106 C T MOGAT2 Missense_Mutation p.A54V 0.16 tolerated(0.52) benign(0.382) TCGA-CM-4752-01 12 100491277 100491277 T A UHRF1BP1L Missense_Mutation p.T179S 0.05 deleterious(0.01) probably_damaging(0.949) TCGA-CM-4752-01 12 24736338 24736338 C T LINC00477 RNA 0.31 TCGA-CM-4752-01 12 53898188 53898188 C G TARBP2 Missense_Mutation p.P144A 0.19 tolerated(0.24) benign(0.057) TCGA-CM-4752-01 12 57994176 57994178 GAG - PIP4K2C In_Frame_Del p.E258del 0.37 TCGA-CM-4752-01 12 7639545 7639545 C T CD163 Silent p.S696S 0.15 TCGA-CM-4752-01 12 9980207 9980207 T C KLRF1 Missense_Mutation p.S23P 0.28 tolerated(0.23) benign(0.003) TCGA-CM-4752-01 13 23909044 23909044 G A SACS Missense_Mutation p.R2991C 0.13 probably_damaging(0.995) TCGA-CM-4752-01 13 32907143 32907143 G T BRCA2 Nonsense_Mutation p.E510* 0.11 TCGA-CM-4752-01 13 39357242 39357242 G A FREM2 Missense_Mutation p.V1893I 0.11 tolerated(1) benign(0.002) TCGA-CM-4752-01 13 49282846 49282846 A G CYSLTR2 3'UTR 0.09 TCGA-CM-4752-01 13 58207610 58207610 C T PCDH17 Silent p.D310D 0.10 TCGA-CM-4752-01 14 105352850 105352850 C T CEP170B Silent p.G758G 0.32 TCGA-CM-4752-01 14 24795506 24795506 G A ADCY4 Missense_Mutation p.R523W 0.29 deleterious(0) probably_damaging(0.95) TCGA-CM-4752-01 14 52156470 52156470 C T FRMD6 5'UTR 0.25 TCGA-CM-4752-01 14 60194227 60194227 G A RTN1 Missense_Mutation p.P392L 0.29 tolerated(0.61) benign(0) TCGA-CM-4752-01 14 71444444 71444444 G A PCNX Missense_Mutation p.V464I 0.26 tolerated_low_confidence(0.35) benign(0.007) TCGA-CM-4752-01 14 96180417 96180417 C T TCL1A 5'UTR 0.25 TCGA-CM-4752-01 15 26026284 26026284 G T ATP10A Missense_Mutation p.A179E 0.17 deleterious(0) probably_damaging(0.997) TCGA-CM-4752-01 15 27182447 27182447 G A GABRA5 Silent p.V232V 0.08 TCGA-CM-4752-01 15 41794252 41794253 - ATGT ITPKA Frame_Shift_Ins p.K290Vfs*10 0.28 TCGA-CM-4752-01 15 48718036 48718036 G A FBN1 Silent p.H2410H 0.18 TCGA-CM-4752-01 15 48782243 48782243 C T FBN1 Missense_Mutation p.E963K 0.09 benign(0.053) TCGA-CM-4752-01 15 55651946 55651946 G A CCPG1 Silent p.N675N 0.07 TCGA-CM-4752-01 15 55652880 55652880 T C CCPG1 Missense_Mutation p.K364R 0.03 tolerated(0.56) possibly_damaging(0.86) TCGA-CM-4752-01 15 74887991 74887991 C T ARID3B Missense_Mutation p.T520M 0.22 deleterious(0.01) possibly_damaging(0.647) TCGA-CM-4752-01 16 2287517 2287517 C T DNASE1L2 Missense_Mutation p.T153M 0.12 tolerated_low_confidence(0.23) benign(0.063) TCGA-CM-4752-01 16 30664157 30664157 A C PRR14 Missense_Mutation p.Q103P 0.27 deleterious_low_confidence(0.03) benign(0.002) TCGA-CM-4752-01 16 3487453 3487453 A C ZNF597 Missense_Mutation p.I82M 0.05 deleterious(0.04) possibly_damaging(0.663) TCGA-CM-4752-01 16 46534668 46534668 T C ANKRD26P1 RNA 0.11 TCGA-CM-4752-01 16 52484350 52484350 G T TOX3 Missense_Mutation p.Q173K 0.40 deleterious(0.01) benign(0.366) TCGA-CM-4752-01 16 54966661 54966661 G A IRX5 Silent p.A167A 0.05 TCGA-CM-4752-01 16 58573827 58573827 C G CNOT1 Missense_Mutation p.D1613H 0.07 deleterious(0.01) benign(0.097) TCGA-CM-4752-01 16 67470225 67470225 C G HSD11B2 Missense_Mutation p.F246L 0.06 tolerated(0.45) benign(0.405) TCGA-CM-4752-01 16 82203744 82203744 G T MPHOSPH6 Missense_Mutation p.L13I 0.20 tolerated(0.17) benign(0.032) TCGA-CM-4752-01 16 87723889 87723889 C T JPH3 Silent p.D641D 0.37 TCGA-CM-4752-01 17 1840969 1840969 C T RTN4RL1 Silent p.P49P 0.39 TCGA-CM-4752-01 17 26726879 26726879 G A SARM1 3'UTR 0.14 TCGA-CM-4752-01 17 37343807 37343807 C G CACNB1 Silent p.P113P 0.16 TCGA-CM-4752-01 17 40647653 40647653 G A ATP6V0A1 Silent p.T500T 0.39 TCGA-CM-4752-01 17 41003816 41003816 G T AOC3 Missense_Mutation p.M152I 0.17 tolerated(0.36) benign(0.001) TCGA-CM-4752-01 17 42018261 42018261 G A PPY 3'UTR 0.26 TCGA-CM-4752-01 17 42636591 42636591 C T FZD2 Missense_Mutation p.P512L 0.14 tolerated(0.1) benign(0.021) TCGA-CM-4752-01 17 43112148 43112148 G A DCAKD Missense_Mutation p.R36W 0.14 deleterious(0) probably_damaging(0.999) TCGA-CM-4752-01 17 48619402 48619402 T G EPN3 Missense_Mutation p.S595A 0.11 tolerated(0.11) benign(0.442) TCGA-CM-4752-01 17 5086627 5086627 G T ZNF594 Missense_Mutation p.H309N 0.18 tolerated(0.68) benign(0.195) TCGA-CM-4752-01 17 6358707 6358707 G A PITPNM3 Missense_Mutation p.P959L 0.41 tolerated_low_confidence(0.06) benign(0.011) TCGA-CM-4752-01 17 66303614 66303614 C T ARSG 5'UTR 0.04 TCGA-CM-4752-01 17 73498229 73498229 C T CASKIN2 Missense_Mutation p.V976M 0.10 tolerated(0.07) benign(0.003) TCGA-CM-4752-01 17 73809878 73809879 GT - UNK Frame_Shift_Del p.W266Gfs*7 0.24 TCGA-CM-4752-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.43 deleterious(0) probably_damaging(0.999) TCGA-CM-4752-01 17 76503606 76503606 G A DNAH17 Silent p.S1502S 0.21 TCGA-CM-4752-01 17 7690256 7690256 G A DNAH2 Missense_Mutation p.V2170M 0.20 probably_damaging(1) TCGA-CM-4752-01 17 79080615 79080615 G A BAIAP2 Missense_Mutation p.D470N 0.13 deleterious(0) possibly_damaging(0.667) TCGA-CM-4752-01 18 25583116 25583116 C T CDH2 Missense_Mutation p.V289I 0.19 deleterious(0.02) possibly_damaging(0.505) TCGA-CM-4752-01 18 42643474 42643474 G A SETBP1 Silent p.P1534P 0.32 TCGA-CM-4752-01 19 15308337 15308337 C A NOTCH3 Missense_Mutation p.Q57H 0.10 tolerated(0.14) possibly_damaging(0.83) TCGA-CM-4752-01 19 17384941 17384941 G A BABAM1 Missense_Mutation p.R164H 0.22 deleterious(0.04) probably_damaging(0.977) TCGA-CM-4752-01 19 35085180 35085180 C T SCGB2B2 Missense_Mutation p.R49H 0.44 deleterious_low_confidence(0.04) benign(0) TCGA-CM-4752-01 19 38376347 38376347 G T WDR87 Missense_Mutation p.P2616H 0.03 unknown(0) TCGA-CM-4752-01 19 39805647 39805647 G A LRFN1 Silent p.A110A 0.47 TCGA-CM-4752-01 19 41516003 41516003 C T CYP2B6 Silent p.Y309Y 0.08 TCGA-CM-4752-01 19 4292734 4292734 C T TMIGD2 Silent p.A237A 0.06 TCGA-CM-4752-01 19 47259026 47259026 G A FKRP Missense_Mutation p.A107T 0.12 tolerated(0.2) benign(0.001) TCGA-CM-4752-01 19 50357949 50357949 G A PTOV1 Missense_Mutation p.R117Q 0.47 tolerated(0.07) possibly_damaging(0.602) TCGA-CM-4752-01 19 53116320 53116320 G A ZNF83 Missense_Mutation p.L500F 0.09 deleterious(0.05) probably_damaging(0.997) TCGA-CM-4752-01 19 55815984 55815984 G A BRSK1 Silent p.P471P 0.17 TCGA-CM-4752-01 19 58144660 58144660 G A ZNF211 5'UTR 0.09 TCGA-CM-4752-01 19 899495 899495 G C R3HDM4 Missense_Mutation p.S216R 0.15 deleterious(0.04) benign(0.012) TCGA-CM-4752-01 1 11276215 11276215 G T MTOR Missense_Mutation p.T1036N 0.14 tolerated(0.4) benign(0.004) TCGA-CM-4752-01 1 152944754 152944754 C A SPRR4 3'UTR 0.19 TCGA-CM-4752-01 1 154315693 154315693 G A ATP8B2 Missense_Mutation p.V553I 0.15 tolerated(0.92) benign(0.237) TCGA-CM-4752-01 1 156626843 156626843 C T BCAN Missense_Mutation p.H722Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-CM-4752-01 1 15701094 15701094 C T FHAD1 Nonsense_Mutation p.R395* 0.45 TCGA-CM-4752-01 1 157068985 157068985 G A ETV3L Missense_Mutation p.R82C 0.18 deleterious(0.01) possibly_damaging(0.871) TCGA-CM-4752-01 1 163038965 163038965 A G RGS4 Intron 0.22 TCGA-CM-4752-01 1 165378892 165378892 G A RXRG Missense_Mutation p.R317C 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4752-01 1 175048764 175048764 C T TNN Silent p.G235G 0.18 TCGA-CM-4752-01 1 175096114 175096114 C T TNN Missense_Mutation p.R980C 0.11 deleterious(0) possibly_damaging(0.901) TCGA-CM-4752-01 1 21036269 21036269 G A KIF17 Missense_Mutation p.T178M 0.32 deleterious(0.03) benign(0.16) TCGA-CM-4752-01 1 21585254 21585254 G A ECE1 Missense_Mutation p.R232C 0.35 deleterious(0.01) probably_damaging(0.962) TCGA-CM-4752-01 1 29438950 29438950 A G EPB41 Missense_Mutation p.D829G 0.49 deleterious(0) probably_damaging(0.999) TCGA-CM-4752-01 1 44443557 44443557 C G ATP6V0B Intron 0.21 TCGA-CM-4752-01 1 44467982 44467982 C T SLC6A9 Intron 0.23 TCGA-CM-4752-01 20 30408010 30408010 C T MYLK2 Missense_Mutation p.P45L 0.07 tolerated_low_confidence(0.05) benign(0.008) TCGA-CM-4752-01 20 35457577 35457577 G C SOGA1 Silent p.L317L 0.08 TCGA-CM-4752-01 20 5528368 5528368 A T GPCPD1 Nonsense_Mutation p.L653* 0.13 TCGA-CM-4752-01 20 55982703 55982703 C T RBM38 Missense_Mutation p.P174L 0.30 tolerated(0.06) benign(0.026) TCGA-CM-4752-01 20 57769076 57769076 C T ZNF831 Missense_Mutation p.A1001V 0.12 tolerated(0.07) benign(0.032) TCGA-CM-4752-01 20 61510681 61510681 G A DIDO1 Silent p.R2209R 0.08 TCGA-CM-4752-01 20 7894999 7894999 C T HAO1 Silent p.A119A 0.12 TCGA-CM-4752-01 22 29684653 29684653 A G EWSR1 Silent p.G290G 0.45 TCGA-CM-4752-01 22 37330030 37330030 G A CSF2RB Missense_Mutation p.E437K 0.15 deleterious(0.03) benign(0.052) TCGA-CM-4752-01 2 113514155 113514155 C T CKAP2L Missense_Mutation p.A265T 0.20 tolerated(0.56) benign(0.046) TCGA-CM-4752-01 2 141250214 141250215 - T LRP1B Frame_Shift_Ins p.I3028Nfs*2 0.27 TCGA-CM-4752-01 2 170060781 170060781 C G LRP2 Silent p.L2572L 0.09 TCGA-CM-4752-01 2 173356219 173356219 G A ITGA6 Missense_Mutation p.E986K 0.16 tolerated(1) benign(0.002) TCGA-CM-4752-01 2 179478665 179478665 C A TTN Splice_Site p.X16449_splice 0.12 TCGA-CM-4752-01 2 207024769 207024769 G T EEF1B2 Missense_Mutation p.K22N 0.18 tolerated(0.07) benign(0.134) TCGA-CM-4752-01 2 218677968 218677968 G A TNS1 Missense_Mutation p.L1538F 0.16 deleterious(0) probably_damaging(1) TCGA-CM-4752-01 2 224809984 224809984 G A WDFY1 Silent p.H6H 0.12 TCGA-CM-4752-01 2 227958849 227958849 C A COL4A4 Missense_Mutation p.G454V 0.09 probably_damaging(0.993) TCGA-CM-4752-01 2 234545609 234545609 G C UGT1A10 Silent p.L147L 0.21 TCGA-CM-4752-01 2 27804763 27804763 G A C2orf16 Missense_Mutation p.R1775H 0.18 tolerated(0.62) benign(0.014) TCGA-CM-4752-01 2 33810012 33810012 C T FAM98A Missense_Mutation p.G463E 0.15 tolerated_low_confidence(0.12) unknown(0) TCGA-CM-4752-01 2 48808068 48808068 C T STON1-GTF2A1L Missense_Mutation p.T99I 0.05 tolerated(0.63) benign(0.107) TCGA-CM-4752-01 2 56108861 56108861 C T EFEMP1 Missense_Mutation p.E176K 0.39 deleterious(0) probably_damaging(0.999) TCGA-CM-4752-01 2 86297314 86297314 G A POLR1A Missense_Mutation p.R565C 0.07 tolerated(0.2) benign(0.003) TCGA-CM-4752-01 3 100356218 100356218 G A GPR128 Missense_Mutation p.A224T 0.31 tolerated(0.46) benign(0.005) TCGA-CM-4752-01 3 101476575 101476575 G A CEP97 Silent p.T375T 0.13 TCGA-CM-4752-01 3 133672573 133672573 C T SLCO2A1 Missense_Mutation p.A220T 0.25 deleterious(0) possibly_damaging(0.904) TCGA-CM-4752-01 3 151164966 151164966 T C IGSF10 Missense_Mutation p.M935V 0.19 tolerated(0.53) benign(0.003) TCGA-CM-4752-01 3 178916651 178916651 T C PIK3CA Missense_Mutation p.I13T 0.34 tolerated(0.39) benign(0.03) TCGA-CM-4752-01 3 180328454 180328454 C A TTC14 3'UTR 0.22 TCGA-CM-4752-01 3 193272623 193272623 T A ATP13A4 5'UTR 0.18 TCGA-CM-4752-01 3 33216542 33216542 G A SUSD5 Missense_Mutation p.S145L 0.11 deleterious(0.02) benign(0.141) TCGA-CM-4752-01 3 41277892 41277892 G A CTNNB1 Missense_Mutation p.C619Y 0.17 tolerated(0.05) possibly_damaging(0.555) TCGA-CM-4752-01 3 66433760 66433760 G T LRIG1 Missense_Mutation p.Q713K 0.10 deleterious(0) possibly_damaging(0.688) TCGA-CM-4752-01 3 9166567 9166567 A G SRGAP3 Silent p.C34C 0.14 TCGA-CM-4752-01 4 141870525 141870525 C T RNF150 Missense_Mutation p.R246H 0.12 deleterious(0.01) possibly_damaging(0.861) TCGA-CM-4752-01 4 2831420 2831420 C T SH3BP2 Missense_Mutation p.R320W 0.06 tolerated_low_confidence(0.16) benign(0.004) TCGA-CM-4752-01 4 87610292 87610292 A G PTPN13 Silent p.S165S 0.06 TCGA-CM-4752-01 4 89653283 89653283 C T FAM13A Missense_Mutation p.D905N 0.15 deleterious(0.02) possibly_damaging(0.707) TCGA-CM-4752-01 5 112163644 112163644 A T APC Nonsense_Mutation p.K523* 0.23 TCGA-CM-4752-01 5 112175676 112175679 AGAG - APC Frame_Shift_Del p.E1464Vfs*8 0.21 TCGA-CM-4752-01 5 13864742 13864742 G A DNAH5 Nonsense_Mutation p.R1454* 0.15 TCGA-CM-4752-01 5 140370 140370 C T PLEKHG4B 5'Flank 0.22 TCGA-CM-4752-01 5 140593778 140593778 C T PCDHB13 Missense_Mutation p.A28V 0.15 tolerated_low_confidence(0.22) benign(0.006) TCGA-CM-4752-01 5 16474838 16474838 C A FAM134B 3'UTR 0.15 TCGA-CM-4752-01 5 176395631 176395631 A G UIMC1 Silent p.D375D 0.22 TCGA-CM-4752-01 5 3599602 3599602 C T IRX1 Silent p.N180N 0.06 TCGA-CM-4752-01 5 70782314 70782314 A G BDP1 Missense_Mutation p.E358G 0.07 deleterious(0) probably_damaging(0.998) TCGA-CM-4752-01 6 101090570 101090570 A C ASCC3 Missense_Mutation p.L1263W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CM-4752-01 6 152673328 152673328 C T SYNE1 Missense_Mutation p.R3805Q 0.23 probably_damaging(0.997) TCGA-CM-4752-01 6 152740711 152740711 C T SYNE1 Missense_Mutation p.R1805Q 0.12 benign(0.003) TCGA-CM-4752-01 6 161027579 161027579 G A LPA Silent p.D905D 0.07 TCGA-CM-4752-01 6 30139941 30139941 G A TRIM15 Missense_Mutation p.D405N 0.24 tolerated(0.48) benign(0.117) TCGA-CM-4752-01 6 31545093 31545093 G A TNF Missense_Mutation p.V161I 0.20 tolerated(0.2) benign(0.008) TCGA-CM-4752-01 6 35423686 35423686 G A FANCE Silent p.G137G 0.38 TCGA-CM-4752-01 6 39873410 39873410 C T MOCS1 3'UTR 0.15 TCGA-CM-4752-01 6 80626209 80626209 G A ELOVL4 3'UTR 0.05 TCGA-CM-4752-01 7 1024067 1024067 C T CYP2W1 Missense_Mutation p.P65L 0.13 deleterious(0) possibly_damaging(0.722) TCGA-CM-4752-01 7 115874651 115874651 G A TES Missense_Mutation p.G31R 0.13 deleterious(0) probably_damaging(1) TCGA-CM-4752-01 7 116146034 116146034 G T CAV2 Missense_Mutation p.M116I 0.33 tolerated(0.12) benign(0.009) TCGA-CM-4752-01 7 117120186 117120186 C A CFTR Missense_Mutation p.S13Y 0.09 deleterious(0) possibly_damaging(0.77) TCGA-CM-4752-01 7 143028357 143028357 C T CLCN1 Nonsense_Mutation p.R338* 0.25 TCGA-CM-4752-01 7 18066675 18066675 A G PRPS1L1 Missense_Mutation p.V244A 0.05 deleterious(0) probably_damaging(0.918) TCGA-CM-4752-01 7 21639473 21639473 C T DNAH11 Silent p.D912D 0.08 TCGA-CM-4752-01 7 21730398 21730398 G T DNAH11 Silent p.G1987G 0.10 TCGA-CM-4752-01 7 40789030 40789030 C A SUGCT Intron 0.28 TCGA-CM-4752-01 7 42005681 42005681 G A GLI3 Missense_Mutation p.A997V 0.37 tolerated(0.91) benign(0.003) TCGA-CM-4752-01 7 81336665 81336665 G A HGF Silent p.C519C 0.08 TCGA-CM-4752-01 7 89909004 89909004 G A C7orf63 Missense_Mutation p.G390D 0.13 tolerated(0.09) probably_damaging(0.992) TCGA-CM-4752-01 7 98608778 98608778 C T TRRAP Missense_Mutation p.T3667M 0.21 benign(0.415) TCGA-CM-4752-01 8 104068139 104068139 G A ATP6V1C1 Missense_Mutation p.E206K 0.10 tolerated(0.06) benign(0.162) TCGA-CM-4752-01 8 2000351 2000351 G A MYOM2 Silent p.T61T 0.26 TCGA-CM-4752-01 8 61531179 61531181 AAG - RAB2A In_Frame_Del p.E173del 0.09 TCGA-CM-4752-01 8 72754703 72754703 C T MSC 3'UTR 0.17 TCGA-CM-4752-01 8 73849007 73849007 G T KCNB2 Nonsense_Mutation p.G473* 0.12 TCGA-CM-4752-01 8 79601527 79601527 T A ZC2HC1A Nonsense_Mutation p.C141* 0.05 TCGA-CM-4752-01 9 111617360 111617360 G A ACTL7B Missense_Mutation p.P284L 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CM-4752-01 9 123939550 123939550 T A CNTRL 3'UTR 0.10 TCGA-CM-4752-01 9 136405808 136405808 C T ADAMTSL2 Silent p.D167D 0.28 TCGA-CM-4752-01 9 19056114 19056114 G T HAUS6 3'UTR 0.09 TCGA-CM-4752-01 9 33948442 33948442 A G UBAP2 Silent p.S400S 0.14 TCGA-CM-4752-01 9 72131289 72131289 T C APBA1 Missense_Mutation p.S280G 0.11 deleterious_low_confidence(0.03) benign(0.05) TCGA-CM-4752-01 X 105011283 105011283 C G IL1RAPL2 Missense_Mutation p.L564V 0.06 tolerated(0.17) benign(0.008) TCGA-CM-4752-01 X 111090508 111090508 G A TRPC5 Missense_Mutation p.R512C 0.62 deleterious(0) probably_damaging(0.996) TCGA-CM-4752-01 X 114425139 114425139 C T RBMXL3 Missense_Mutation p.R379W 0.04 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-CM-4752-01 X 125685953 125685953 G A DCAF12L1 Silent p.R213R 0.25 TCGA-CM-4752-01 X 34149359 34149359 C T FAM47A Missense_Mutation p.R346Q 0.10 tolerated(0.21) benign(0.36) TCGA-CM-4752-01 X 99931013 99931013 G A SYTL4 3'UTR 0.73 TCGA-CM-5341-01 10 103899090 103899090 C T PPRC1 Silent p.P275P 0.31 TCGA-CM-5341-01 10 105138128 105138128 G C TAF5 Missense_Mutation p.D312H 0.22 deleterious(0) benign(0.44) TCGA-CM-5341-01 10 129537072 129537072 C T FOXI2 Missense_Mutation p.A267V 0.42 tolerated(0.35) possibly_damaging(0.75) TCGA-CM-5341-01 10 23270329 23270329 G C ARMC3 Missense_Mutation p.G326A 0.16 tolerated(0.48) benign(0.226) TCGA-CM-5341-01 10 461756 461756 G A DIP2C Missense_Mutation p.P271L 0.19 deleterious(0.03) benign(0.444) TCGA-CM-5341-01 10 69565403 69565403 G A DNAJC12 Missense_Mutation p.T147M 0.14 tolerated(0.2) benign(0.001) TCGA-CM-5341-01 10 75034322 75034322 G C TTC18 Missense_Mutation p.L972V 0.27 tolerated(0.19) possibly_damaging(0.801) TCGA-CM-5341-01 11 118123005 118123005 T A MPZL3 Missense_Mutation p.Q2L 0.33 tolerated_low_confidence(0.08) benign(0.075) TCGA-CM-5341-01 11 130275573 130275573 G A ADAMTS8 Silent p.A850A 0.30 TCGA-CM-5341-01 11 130297563 130297563 C - ADAMTS8 Frame_Shift_Del p.A207Pfs*38 0.26 TCGA-CM-5341-01 11 133801654 133801654 G T IGSF9B Silent p.R383R 0.11 TCGA-CM-5341-01 11 55135855 55135855 C A OR4A15 Missense_Mutation p.R166S 0.32 deleterious_low_confidence(0.01) benign(0.134) TCGA-CM-5341-01 11 66359284 66359284 C A CCDC87 Missense_Mutation p.M401I 0.27 tolerated(0.18) benign(0) TCGA-CM-5341-01 11 68522390 68522390 T G CPT1A 3'UTR 0.39 TCGA-CM-5341-01 11 70644587 70644587 C T SHANK2 Missense_Mutation p.V581M 0.62 deleterious(0.04) probably_damaging(0.994) TCGA-CM-5341-01 11 73008014 73008014 G A P2RY6 Missense_Mutation p.V151M 0.36 deleterious(0) probably_damaging(0.953) TCGA-CM-5341-01 11 76901152 76901152 C T MYO7A Missense_Mutation p.R1240W 0.37 deleterious(0) probably_damaging(0.999) TCGA-CM-5341-01 11 7847420 7847420 T C OR5P3 Missense_Mutation p.I34V 0.41 tolerated(0.31) benign(0.009) TCGA-CM-5341-01 11 800658 800658 G A PIDD Silent p.A642A 0.27 TCGA-CM-5341-01 11 92615999 92615999 C T FAT3 Missense_Mutation p.P4126L 0.29 benign(0.23) TCGA-CM-5341-01 11 9875232 9875233 AT - SBF2 Frame_Shift_Del p.Y797* 0.09 TCGA-CM-5341-01 12 100934587 100934587 C T NR1H4 Nonsense_Mutation p.R367* 0.38 TCGA-CM-5341-01 12 123011465 123011465 C T RSRC2 5'UTR 0.33 TCGA-CM-5341-01 12 129569335 129569335 G T TMEM132D Intron 0.33 TCGA-CM-5341-01 12 130890782 130890782 G T RIMBP2 Missense_Mutation p.L978I 0.09 deleterious(0) probably_damaging(0.998) TCGA-CM-5341-01 12 132471330 132471330 C T EP400 Missense_Mutation p.T734M 0.26 unknown(0) TCGA-CM-5341-01 12 23728629 23728629 C T SOX5 Silent p.A436A 0.36 TCGA-CM-5341-01 12 43823458 43823458 T C ADAMTS20 Missense_Mutation p.K1151E 0.14 tolerated(1) benign(0.001) TCGA-CM-5341-01 12 44770403 44770403 G A TMEM117 Missense_Mutation p.G265E 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-CM-5341-01 12 50757105 50757105 G A FAM186A Missense_Mutation p.R79W 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-CM-5341-01 12 52714811 52714811 G A KRT83 Silent p.N103N 0.15 TCGA-CM-5341-01 12 57594937 57594937 G A LRP1 Splice_Site p.X3449_splice 0.11 TCGA-CM-5341-01 12 57858986 57858986 G A GLI1 Missense_Mutation p.R161Q 0.47 tolerated(0.27) benign(0.001) TCGA-CM-5341-01 12 75601083 75601083 G A KCNC2 Silent p.A227A 0.09 TCGA-CM-5341-01 12 99093246 99093246 A T APAF1 Missense_Mutation p.N789Y 0.51 deleterious(0.01) benign(0.396) TCGA-CM-5341-01 12 99201661 99201661 G A ANKS1B Intron 0.24 TCGA-CM-5341-01 13 109793408 109793408 C T MYO16 Silent p.A1594A 0.41 TCGA-CM-5341-01 13 36686223 36686223 G C DCLK1 Missense_Mutation p.A169G 0.21 tolerated(0.46) unknown(0) TCGA-CM-5341-01 13 38154760 38154760 G A POSTN Silent p.R489R 0.41 TCGA-CM-5341-01 13 46531254 46531254 C G ZC3H13 3'UTR 0.15 TCGA-CM-5341-01 13 46549683 46549683 G A ZC3H13 Nonsense_Mutation p.R735* 0.41 TCGA-CM-5341-01 13 46559498 46559498 G A ZC3H13 Nonsense_Mutation p.R552* 0.16 TCGA-CM-5341-01 13 92002942 92002942 C G MIR17HG RNA 0.14 TCGA-CM-5341-01 14 21945093 21945093 T G RAB2B 5'UTR 0.26 TCGA-CM-5341-01 14 38310867 38310867 T A TTC6 Missense_Mutation p.L1839H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CM-5341-01 14 50206860 50206860 T C KLHDC1 Missense_Mutation p.V314A 0.25 deleterious(0) benign(0.257) TCGA-CM-5341-01 14 89148335 89148335 G T EML5 Missense_Mutation p.P1008H 0.14 deleterious(0) probably_damaging(0.985) TCGA-CM-5341-01 15 28202861 28202861 C T OCA2 Missense_Mutation p.V553I 0.33 tolerated(0.4) possibly_damaging(0.683) TCGA-CM-5341-01 15 49036508 49036508 C G CEP152 Missense_Mutation p.C1255S 0.22 deleterious(0.02) benign(0.039) TCGA-CM-5341-01 15 49054646 49054646 G C CEP152 Missense_Mutation p.A835G 0.40 tolerated(0.18) benign(0.009) TCGA-CM-5341-01 15 74706945 74706945 C T SEMA7A Missense_Mutation p.V413I 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-CM-5341-01 16 11931683 11931683 T C RSL1D1 Silent p.K478K 0.09 TCGA-CM-5341-01 16 2569320 2569320 A G RP11-20I23.1 Missense_Mutation p.H356R 0.38 unknown(0) TCGA-CM-5341-01 16 2578588 2578588 G A AMDHD2 Missense_Mutation p.R333K 0.14 tolerated(0.23) benign(0) TCGA-CM-5341-01 16 3614704 3614704 C T NLRC3 Silent p.P125P 0.33 TCGA-CM-5341-01 16 67270582 67270582 C T FHOD1 Silent p.L399L 0.37 TCGA-CM-5341-01 16 75146526 75146526 G C LDHD Silent p.V444V 0.26 TCGA-CM-5341-01 16 89977042 89977042 C T TCF25 Missense_Mutation p.R615W 0.30 deleterious(0) possibly_damaging(0.836) TCGA-CM-5341-01 17 20108750 20108750 T A SPECC1 Missense_Mutation p.I463N 0.64 deleterious(0.01) possibly_damaging(0.691) TCGA-CM-5341-01 17 20768620 20768620 A T CCDC144NL 3'UTR 0.17 TCGA-CM-5341-01 17 37566601 37566601 G C MED1 Missense_Mutation p.P625A 0.10 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-CM-5341-01 17 38433374 38433374 A G WIPF2 Missense_Mutation p.D407G 0.26 deleterious(0) probably_damaging(0.996) TCGA-CM-5341-01 17 41008391 41008391 C T AOC3 Nonsense_Mutation p.R706* 0.53 TCGA-CM-5341-01 17 43351839 43351839 A G MAP3K14 RNA 0.11 TCGA-CM-5341-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.44 deleterious(0) probably_damaging(1) TCGA-CM-5341-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.64 tolerated(0.1) benign(0.438) TCGA-CM-5341-01 18 3256114 3256114 A C MYL12A 3'UTR 0.36 TCGA-CM-5341-01 19 13059548 13059548 G A RAD23A Missense_Mutation p.G174D 0.38 deleterious(0) probably_damaging(1) TCGA-CM-5341-01 19 15342150 15342150 C A EPHX3 Silent p.V129V 0.26 TCGA-CM-5341-01 19 2223287 2223287 A G DOT1L Missense_Mutation p.N1133S 0.10 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CM-5341-01 19 36303630 36303630 G A PRODH2 Silent p.G102G 0.45 TCGA-CM-5341-01 19 36317206 36317206 T - NPHS1 3'UTR 0.50 TCGA-CM-5341-01 19 37118020 37118020 G A ZNF382 Silent p.P407P 0.36 TCGA-CM-5341-01 19 39369891 39369891 C T SIRT2 Silent p.A358A 0.32 TCGA-CM-5341-01 19 4290704 4290704 T - SHD 3'UTR 0.28 TCGA-CM-5341-01 19 4525051 4525051 G A PLIN5 Missense_Mutation p.P253L 0.41 tolerated(0.59) benign(0.36) TCGA-CM-5341-01 19 603706 603706 C T HCN2 Silent p.T265T 0.11 TCGA-CM-5341-01 19 6702496 6702496 C G C3 Missense_Mutation p.E780D 0.15 tolerated(0.21) benign(0.001) TCGA-CM-5341-01 19 9801339 9801339 C T ZNF812 Silent p.T280T 0.37 TCGA-CM-5341-01 1 101005785 101005785 G A GPR88 3'UTR 0.38 TCGA-CM-5341-01 1 103352549 103352549 T G COL11A1 Missense_Mutation p.T1558P 0.16 unknown(0) TCGA-CM-5341-01 1 152193387 152193387 G T HRNR Missense_Mutation p.Q240K 0.36 unknown(0) TCGA-CM-5341-01 1 155783466 155783466 C T GON4L Missense_Mutation p.E471K 0.37 deleterious(0.04) possibly_damaging(0.486) TCGA-CM-5341-01 1 156552193 156552193 C T TTC24 Missense_Mutation p.R293W 0.16 deleterious(0.02) possibly_damaging(0.863) TCGA-CM-5341-01 1 156696790 156696790 G C ISG20L2 Missense_Mutation p.P219A 0.09 tolerated(0.32) probably_damaging(0.999) TCGA-CM-5341-01 1 159888626 159888626 G A TAGLN2 Silent p.G188G 0.29 TCGA-CM-5341-01 1 160722978 160722978 A - SLAMF7 3'UTR 0.28 TCGA-CM-5341-01 1 17034541 17034541 G A ESPNP RNA 0.12 TCGA-CM-5341-01 1 176564607 176564607 C T PAPPA2 Missense_Mutation p.R623C 0.28 deleterious(0) probably_damaging(0.912) TCGA-CM-5341-01 1 186043938 186043938 T C HMCN1 Silent p.A2735A 0.18 TCGA-CM-5341-01 1 19181155 19181155 C T TAS1R2 Missense_Mutation p.R270H 0.24 tolerated(0.13) benign(0.177) TCGA-CM-5341-01 1 1961507 1961507 G A GABRD Missense_Mutation p.R382H 0.29 tolerated(0.1) possibly_damaging(0.76) TCGA-CM-5341-01 1 204217960 204217960 G A PLEKHA6 Nonsense_Mutation p.Q605* 0.15 TCGA-CM-5341-01 1 204943372 204943372 C T NFASC Missense_Mutation p.R449W 0.39 deleterious(0.04) probably_damaging(0.994) TCGA-CM-5341-01 1 205225358 205225358 A G TMCC2 Intron 0.12 TCGA-CM-5341-01 1 207073659 207073659 C T IL24 Missense_Mutation p.T88M 0.18 tolerated(0.09) benign(0.108) TCGA-CM-5341-01 1 21044075 21044075 G A KIF17 Missense_Mutation p.P42L 0.40 deleterious(0.03) possibly_damaging(0.856) TCGA-CM-5341-01 1 223176045 223176045 T C DISP1 Missense_Mutation p.F436L 0.40 deleterious(0) possibly_damaging(0.842) TCGA-CM-5341-01 1 22965615 22965615 C T C1QA Silent p.F151F 0.26 TCGA-CM-5341-01 1 24998042 24998042 A G SRRM1 Missense_Mutation p.T856A 0.22 unknown(0) TCGA-CM-5341-01 1 40537164 40537164 G A CAP1 Missense_Mutation p.G463R 0.30 deleterious(0.03) possibly_damaging(0.863) TCGA-CM-5341-01 1 52704337 52704337 C T ZFYVE9 Silent p.N416N 0.29 TCGA-CM-5341-01 1 53347162 53347162 G A ZYG11A Missense_Mutation p.R590K 0.12 tolerated(0.99) benign(0.001) TCGA-CM-5341-01 1 53927149 53927149 G A DMRTB1 Missense_Mutation p.R194H 0.40 tolerated(0.57) benign(0.001) TCGA-CM-5341-01 1 68895572 68895572 G T RPE65 Missense_Mutation p.Q497K 0.30 tolerated(0.15) benign(0.02) TCGA-CM-5341-01 1 70446124 70446124 A T LRRC7 Missense_Mutation p.Q220H 0.05 deleterious(0.04) benign(0.309) TCGA-CM-5341-01 20 13773838 13773838 A T NDUFAF5 Nonsense_Mutation p.K114* 0.26 TCGA-CM-5341-01 20 18534976 18534976 T A SEC23B Missense_Mutation p.I697N 0.15 deleterious(0) possibly_damaging(0.89) TCGA-CM-5341-01 20 30672339 30672339 C T HCK Silent p.V276V 0.26 TCGA-CM-5341-01 20 41101120 41101120 G A PTPRT Silent p.Y412Y 0.15 TCGA-CM-5341-01 20 42788997 42788997 G A JPH2 Missense_Mutation p.R144C 0.10 deleterious(0) probably_damaging(0.998) TCGA-CM-5341-01 20 43629850 43629850 G T STK4 Missense_Mutation p.G335C 0.13 deleterious(0.02) benign(0.009) TCGA-CM-5341-01 20 62196127 62196127 C A HELZ2 Missense_Mutation p.A1350S 0.13 tolerated(0.31) probably_damaging(1) TCGA-CM-5341-01 21 22910264 22910264 G A NCAM2 Missense_Mutation p.D834N 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-CM-5341-01 21 37716997 37716997 A G MORC3 Missense_Mutation p.K293E 0.29 tolerated(0.18) benign(0.358) TCGA-CM-5341-01 21 43959682 43959682 C T SLC37A1 Silent p.S137S 0.49 TCGA-CM-5341-01 21 47746368 47746368 G A PCNT Silent p.S44S 0.31 TCGA-CM-5341-01 22 26351202 26351202 G C MYO18B Missense_Mutation p.A2010P 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-CM-5341-01 22 30771576 30771576 T C CCDC157 Missense_Mutation p.V594A 0.11 deleterious(0.02) benign(0.435) TCGA-CM-5341-01 22 44514932 44514932 G T PARVB Missense_Mutation p.W129C 0.34 deleterious(0) probably_damaging(1) TCGA-CM-5341-01 22 46761131 46761131 T A CELSR1 Nonsense_Mutation p.K2851* 0.29 TCGA-CM-5341-01 2 105716202 105716202 A C MRPS9 Missense_Mutation p.T392P 0.17 deleterious(0.03) probably_damaging(1) TCGA-CM-5341-01 2 121748246 121748246 A G GLI2 Missense_Mutation p.T1586A 0.14 deleterious(0) probably_damaging(0.97) TCGA-CM-5341-01 2 122485596 122485596 T G NIFK Intron 0.29 TCGA-CM-5341-01 2 130832316 130832316 C T POTEF Missense_Mutation p.R910H 0.49 deleterious_low_confidence(0.03) probably_damaging(0.962) TCGA-CM-5341-01 2 132021757 132021757 G A POTEE Missense_Mutation p.R910H 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.747) TCGA-CM-5341-01 2 141004688 141004688 G A LRP1B Missense_Mutation p.P4431S 0.13 possibly_damaging(0.641) TCGA-CM-5341-01 2 170177373 170177373 C T LRP2 Missense_Mutation p.R34H 0.11 probably_damaging(0.964) TCGA-CM-5341-01 2 182322424 182322424 G A ITGA4 Missense_Mutation p.A15T 0.33 tolerated(0.09) benign(0.1) TCGA-CM-5341-01 2 182339909 182339909 T C ITGA4 Silent p.N150N 0.18 TCGA-CM-5341-01 2 220344529 220344529 C T SPEG Silent p.L1704L 0.42 TCGA-CM-5341-01 2 225244244 225244244 A G FAM124B 3'UTR 0.12 TCGA-CM-5341-01 2 232325263 232325263 T A NCL Missense_Mutation p.E275V 0.16 benign(0.149) TCGA-CM-5341-01 2 26501646 26501646 C T HADHB Nonsense_Mutation p.R203* 0.38 TCGA-CM-5341-01 2 62103266 62103266 C T CCT4 Missense_Mutation p.G294E 0.39 deleterious(0) probably_damaging(0.99) TCGA-CM-5341-01 2 70905912 70905912 G A ADD2 Missense_Mutation p.T436M 0.20 deleterious(0) probably_damaging(0.958) TCGA-CM-5341-01 2 79255391 79255391 T C REG3G Missense_Mutation p.F173L 0.15 tolerated(0.05) possibly_damaging(0.875) TCGA-CM-5341-01 2 80808877 80808877 A C CTNNA2 Missense_Mutation p.Y647S 0.22 tolerated(0.16) benign(0.133) TCGA-CM-5341-01 3 112256607 112256607 C A ATG3 Missense_Mutation p.R214L 0.42 deleterious(0) possibly_damaging(0.873) TCGA-CM-5341-01 3 112732251 112732251 C G C3orf17 Splice_Site p.X114_splice 0.10 TCGA-CM-5341-01 3 130150712 130150712 G A COL6A5 Silent p.T1884T 0.37 TCGA-CM-5341-01 3 45989218 45989218 T G CXCR6 3'UTR 0.27 TCGA-CM-5341-01 3 52476794 52476794 C T SEMA3G Missense_Mutation p.R82Q 0.33 tolerated(0.24) benign(0.055) TCGA-CM-5341-01 3 53139714 53139714 C T RFT1 Missense_Mutation p.G311E 0.42 tolerated(0.33) benign(0.319) TCGA-CM-5341-01 3 57386227 57386227 C T DNAH12 Missense_Mutation p.R10H 0.13 deleterious(0.02) probably_damaging(1) TCGA-CM-5341-01 3 97617832 97617832 G A CRYBG3 Missense_Mutation p.G655S 0.34 deleterious(0.03) probably_damaging(0.942) TCGA-CM-5341-01 4 100756892 100756892 C G DAPP1 Missense_Mutation p.L72V 0.11 tolerated(0.08) possibly_damaging(0.605) TCGA-CM-5341-01 4 118005966 118005966 C T TRAM1L1 Missense_Mutation p.R195H 0.43 deleterious(0.05) benign(0.022) TCGA-CM-5341-01 4 128942317 128942317 G C C4orf29 Intron 0.13 TCGA-CM-5341-01 4 26719597 26719597 T A TBC1D19 Missense_Mutation p.F333I 0.19 tolerated(0.18) probably_damaging(0.928) TCGA-CM-5341-01 4 26719599 26719599 T G TBC1D19 Missense_Mutation p.F333L 0.21 tolerated(0.27) benign(0.42) TCGA-CM-5341-01 4 36230542 36230542 G C ARAP2 Missense_Mutation p.H189Q 0.18 tolerated_low_confidence(0.27) benign(0.021) TCGA-CM-5341-01 4 37358052 37358052 G A KIAA1239 Missense_Mutation p.R102H 0.35 deleterious(0) probably_damaging(0.982) TCGA-CM-5341-01 4 71691857 71691857 G A GRSF1 Missense_Mutation p.A414V 0.15 deleterious(0) possibly_damaging(0.512) TCGA-CM-5341-01 4 845661 845661 C T GAK Missense_Mutation p.A1129T 0.45 tolerated(1) benign(0.001) TCGA-CM-5341-01 5 101585437 101585437 G A SLCO4C1 Nonsense_Mutation p.R509* 0.24 TCGA-CM-5341-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.30 TCGA-CM-5341-01 5 137475664 137475664 A T BRD8 3'UTR 0.29 TCGA-CM-5341-01 5 137726768 137726768 T G KDM3B Missense_Mutation p.L483V 0.14 tolerated_low_confidence(0.35) benign(0.446) TCGA-CM-5341-01 5 140011461 140011461 C T CD14 Missense_Mutation p.G370R 0.30 tolerated(0.11) benign(0.263) TCGA-CM-5341-01 5 140176813 140176813 G A PCDHA2 Missense_Mutation p.R755Q 0.42 tolerated_low_confidence(0.11) benign(0.031) TCGA-CM-5341-01 5 140255107 140255107 C T PCDHA12 Missense_Mutation p.S17L 0.14 tolerated_low_confidence(0.76) benign(0.005) TCGA-CM-5341-01 5 140263195 140263195 G A PCDHA13 Missense_Mutation p.V448M 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-CM-5341-01 5 140482358 140482358 G A PCDHB3 Missense_Mutation p.V709M 0.30 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-CM-5341-01 5 140603303 140603303 C T PCDHB14 Missense_Mutation p.H76Y 0.12 tolerated_low_confidence(0.08) benign(0.004) TCGA-CM-5341-01 5 140890560 140890560 G A PCDHGB6 Missense_Mutation p.M871I 0.44 deleterious(0) benign(0.088) TCGA-CM-5341-01 5 145613171 145613194 CCAGGTCCAGGCCCAGGCCCGGGC - RBM27 In_Frame_Del p.P351_G358del 0.09 TCGA-CM-5341-01 5 148406703 148406703 G C SH3TC2 Missense_Mutation p.N864K 0.14 tolerated(1) benign(0.002) TCGA-CM-5341-01 5 149602239 149602239 C T CAMK2A 3'Flank 0.47 TCGA-CM-5341-01 5 150274885 150274885 T G ZNF300 3'UTR 0.42 TCGA-CM-5341-01 5 159797645 159797645 C G C1QTNF2 5'UTR 0.43 TCGA-CM-5341-01 5 177022345 177022345 C T TMED9 Silent p.L212L 0.41 TCGA-CM-5341-01 5 23522750 23522750 T C PRDM9 Missense_Mutation p.I213T 0.39 deleterious(0.04) benign(0.246) TCGA-CM-5341-01 5 31323107 31323107 C T CDH6 Nonsense_Mutation p.R689* 0.27 TCGA-CM-5341-01 5 45262258 45262258 G T HCN1 Missense_Mutation p.A813D 0.50 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CM-5341-01 5 61847134 61847134 A C IPO11 Missense_Mutation p.N851H 0.13 deleterious(0.04) benign(0.272) TCGA-CM-5341-01 6 112041128 112041128 C T FYN Missense_Mutation p.G43S 0.67 tolerated(0.78) benign(0.002) TCGA-CM-5341-01 6 129775299 129775299 G C LAMA2 Splice_Site p.X2192_splice 0.06 TCGA-CM-5341-01 6 152529328 152529328 G T SYNE1 Missense_Mutation p.L7535M 0.72 probably_damaging(0.987) TCGA-CM-5341-01 6 31864894 31864894 C A EHMT2 Intron 0.09 TCGA-CM-5341-01 6 32087711 32087711 C T ATF6B Missense_Mutation p.G286S 0.17 tolerated(0.77) probably_damaging(0.987) TCGA-CM-5341-01 6 75848049 75848049 G T COL12A1 Silent p.I1746I 0.17 TCGA-CM-5341-01 7 100136878 100136878 G A AGFG2 5'UTR 0.31 TCGA-CM-5341-01 7 151057252 151057252 A T NUB1 Missense_Mutation p.H264L 0.21 deleterious(0) probably_damaging(0.998) TCGA-CM-5341-01 7 154739639 154739639 G A PAXIP1 Missense_Mutation p.R966W 0.15 deleterious(0) unknown(0) TCGA-CM-5341-01 7 21639563 21639563 G A DNAH11 Silent p.P942P 0.37 TCGA-CM-5341-01 7 21805143 21805143 C T DNAH11 Missense_Mutation p.A3020V 0.24 benign(0.005) TCGA-CM-5341-01 7 21813560 21813560 C T DNAH11 Silent p.S3100S 0.38 TCGA-CM-5341-01 7 27181325 27181325 A G HOXA5 3'UTR 0.18 TCGA-CM-5341-01 7 44151816 44151816 C G AEBP1 Missense_Mutation p.L705V 0.21 deleterious(0) possibly_damaging(0.808) TCGA-CM-5341-01 7 44154416 44154416 C T POLD2 Missense_Mutation p.D460N 0.36 deleterious(0.02) unknown(0) TCGA-CM-5341-01 7 82996853 82996853 T C SEMA3E 3'UTR 0.26 TCGA-CM-5341-01 8 119964138 119964138 T A TNFRSF11B 5'UTR 0.17 TCGA-CM-5341-01 8 124657935 124657935 C A KLHL38 3'UTR 0.57 TCGA-CM-5341-01 8 134232956 134232956 G A WISP1 Missense_Mutation p.R161H 0.52 deleterious(0.02) probably_damaging(0.932) TCGA-CM-5341-01 8 144940807 144940807 G C EPPK1 Missense_Mutation p.S2205R 0.21 benign(0.001) TCGA-CM-5341-01 8 3047502 3047502 G A CSMD1 Missense_Mutation p.T1777M 0.32 benign(0.017) TCGA-CM-5341-01 8 53536372 53536372 C T RB1CC1 Silent p.V1585V 0.18 TCGA-CM-5341-01 8 57025607 57025607 C T MOS Missense_Mutation p.R312H 0.63 tolerated(0.11) possibly_damaging(0.775) TCGA-CM-5341-01 8 67576549 67576549 G C VCPIP1 Missense_Mutation p.S882C 0.07 deleterious(0.02) benign(0.294) TCGA-CM-5341-01 8 71496025 71496025 A C TRAM1 Missense_Mutation p.F250L 0.14 tolerated(0.1) benign(0.044) TCGA-CM-5341-01 9 100326397 100326397 C T TMOD1 Missense_Mutation p.R189W 0.23 deleterious(0) possibly_damaging(0.82) TCGA-CM-5341-01 9 113562813 113562813 C T MUSK Missense_Mutation p.R719C 0.38 deleterious(0.02) probably_damaging(1) TCGA-CM-5341-01 9 116930294 116930294 C T COL27A1 Silent p.D153D 0.40 TCGA-CM-5341-01 9 127237874 127237874 G A GPR144 Missense_Mutation p.A916T 0.38 tolerated(0.49) benign(0) TCGA-CM-5341-01 9 130095380 130095380 G A GARNL3 Missense_Mutation p.R250H 0.27 deleterious(0) probably_damaging(0.991) TCGA-CM-5341-01 9 130707715 130707715 C T FAM102A Missense_Mutation p.R283Q 0.38 tolerated(0.2) benign(0.053) TCGA-CM-5341-01 9 135277373 135277373 T - TTF1 Frame_Shift_Del p.K279Rfs*144 0.13 TCGA-CM-5341-01 9 35660298 35660298 T A ARHGEF39 3'UTR 0.40 TCGA-CM-5341-01 9 4118116 4118116 C A GLIS3 Silent p.P454P 0.35 TCGA-CM-5341-01 X 153664356 153664356 C T ATP6AP1 3'UTR 0.29 TCGA-CM-5341-01 X 31089557 31089557 C A FTHL17 Missense_Mutation p.D172Y 0.47 deleterious(0) possibly_damaging(0.874) TCGA-CM-5341-01 X 75004645 75004645 G A MAGEE2 Missense_Mutation p.A81V 0.61 tolerated(0.06) probably_damaging(0.98) TCGA-CM-5344-01 10 6472852 6472852 G A PRKCQ Missense_Mutation p.R629C 0.24 deleterious(0.01) benign(0.342) TCGA-CM-5344-01 10 96039569 96039569 G A PLCE1 Missense_Mutation p.A1566T 0.54 tolerated(0.14) benign(0.035) TCGA-CM-5344-01 11 107578603 107578603 C T SLN Silent p.T18T 0.14 TCGA-CM-5344-01 11 59283139 59283139 G A OR4D9 Missense_Mutation p.V252M 0.40 deleterious(0.05) possibly_damaging(0.73) TCGA-CM-5344-01 11 64434762 64434762 G A NRXN2 Silent p.G586G 0.18 TCGA-CM-5344-01 11 74985171 74985171 G A ARRB1 Silent p.L287L 0.42 TCGA-CM-5344-01 11 76893525 76893525 C A MYO7A Silent p.P1055P 0.21 TCGA-CM-5344-01 12 103872155 103872155 G T C12orf42 Missense_Mutation p.T17N 0.16 tolerated_low_confidence(0.41) possibly_damaging(0.895) TCGA-CM-5344-01 12 11149490 11149490 C A TAS2R20 3'UTR 0.17 TCGA-CM-5344-01 12 111748092 111748092 C T CUX2 Silent p.G502G 0.18 TCGA-CM-5344-01 12 12397416 12397416 G A LRP6 Nonsense_Mutation p.R77* 0.22 TCGA-CM-5344-01 12 23689543 23689543 C T SOX5 Missense_Mutation p.R611H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CM-5344-01 12 51080372 51080372 A G DIP2B Silent p.K486K 0.16 TCGA-CM-5344-01 12 53201573 53201573 G A KRT4 Missense_Mutation p.R401C 0.22 deleterious(0) benign(0.016) TCGA-CM-5344-01 13 24892968 24892968 G A C1QTNF9 Missense_Mutation p.R60H 0.08 tolerated(0.54) benign(0.002) TCGA-CM-5344-01 13 37269857 37269857 G A SERTM1 3'UTR 0.13 TCGA-CM-5344-01 13 67801664 67801665 AA - PCDH9 Frame_Shift_Del p.F303Cfs*4 0.23 TCGA-CM-5344-01 14 23354518 23354518 G T REM2 Silent p.V163V 0.16 TCGA-CM-5344-01 14 33204951 33204951 C T AKAP6 Silent p.L1079L 0.19 TCGA-CM-5344-01 14 65569155 65569155 C A MAX 5'UTR 0.29 TCGA-CM-5344-01 14 88938703 88938703 G T PTPN21 Missense_Mutation p.P919H 0.23 deleterious(0) probably_damaging(0.988) TCGA-CM-5344-01 14 94640798 94640798 G C PPP4R4 5'UTR 0.17 TCGA-CM-5344-01 15 22332528 22332528 G T RP11-69H14.6 RNA 0.23 TCGA-CM-5344-01 15 43785326 43785326 T C TP53BP1 5'UTR 0.10 TCGA-CM-5344-01 16 31393247 31393249 CTT - ITGAX 3'UTR 0.29 TCGA-CM-5344-01 17 19645351 19645351 C T ALDH3A1 Missense_Mutation p.V219M 0.53 deleterious(0) possibly_damaging(0.889) TCGA-CM-5344-01 17 30615964 30615964 C T RHBDL3 Missense_Mutation p.R150C 0.12 deleterious(0) probably_damaging(0.985) TCGA-CM-5344-01 17 38185174 38185174 G A MED24 Silent p.V438V 0.34 TCGA-CM-5344-01 17 38955166 38955166 T C KRT28 Intron 0.37 TCGA-CM-5344-01 17 39019389 39019389 G A KRT12 Silent p.D434D 0.43 TCGA-CM-5344-01 17 39156037 39156037 G T KRTAP3-2 Missense_Mutation p.D23E 0.20 tolerated_low_confidence(0.07) benign(0.149) TCGA-CM-5344-01 17 39768868 39768868 C A KRT16 Missense_Mutation p.G25W 0.34 deleterious(0) unknown(0) TCGA-CM-5344-01 17 62050149 62050149 C T SCN4A Missense_Mutation p.R18H 0.12 tolerated(0.06) benign(0.028) TCGA-CM-5344-01 17 7664160 7664160 G A DNAH2 Missense_Mutation p.R963Q 0.53 possibly_damaging(0.477) TCGA-CM-5344-01 18 14538150 14538151 - T POTEC Frame_Shift_Ins p.R207Kfs*14 0.19 TCGA-CM-5344-01 18 61471917 61471917 C T SERPINB7 3'UTR 0.33 TCGA-CM-5344-01 19 2733193 2733193 G A SLC39A3 Silent p.P167P 0.26 TCGA-CM-5344-01 19 30935477 30935477 C T ZNF536 Silent p.G336G 0.45 TCGA-CM-5344-01 19 41250584 41250584 C T C19orf54 Missense_Mutation p.G133R 0.18 deleterious(0) probably_damaging(1) TCGA-CM-5344-01 19 4550841 4550841 G A SEMA6B Missense_Mutation p.P364L 0.23 deleterious(0) benign(0.279) TCGA-CM-5344-01 19 48018113 48018115 AGA - NAPA In_Frame_Del p.F28del 0.45 TCGA-CM-5344-01 19 50191652 50191652 C T PRMT1 3'UTR 0.25 TCGA-CM-5344-01 19 52521285 52521285 T C ZNF614 Missense_Mutation p.K72E 0.21 tolerated(1) benign(0.001) TCGA-CM-5344-01 19 55748022 55748052 TGGCTGGCCCAGACGGGCCCCCCTGGCCAGC - PPP6R1 Frame_Shift_Del p.Q649Hfs*259 0.21 TCGA-CM-5344-01 19 56012144 56012144 G A SSC5D Missense_Mutation p.E864K 0.19 possibly_damaging(0.849) TCGA-CM-5344-01 1 118609392 118609392 G A SPAG17 Missense_Mutation p.A839V 0.23 deleterious(0) benign(0.234) TCGA-CM-5344-01 1 176734814 176734814 G T PAPPA2 Silent p.R1388R 0.21 TCGA-CM-5344-01 1 179989766 179989766 A G CEP350 Missense_Mutation p.K953E 0.34 benign(0.2) TCGA-CM-5344-01 1 235613396 235613396 A G B3GALNT2 3'UTR 0.08 TCGA-CM-5344-01 1 24172140 24172140 C G FUCA1 3'UTR 0.37 TCGA-CM-5344-01 1 49193665 49193665 C T BEND5 Missense_Mutation p.A387T 0.51 tolerated(0.43) possibly_damaging(0.82) TCGA-CM-5344-01 1 6184072 6184072 C T CHD5 Silent p.S1545S 0.55 TCGA-CM-5344-01 1 63050474 63050474 G T DOCK7 Intron 0.29 TCGA-CM-5344-01 20 2945841 2945841 T C PTPRA Silent p.P136P 0.11 TCGA-CM-5344-01 20 37214728 37214728 C A ADIG Missense_Mutation p.P61T 0.13 tolerated(0.1) benign(0.29) TCGA-CM-5344-01 20 44681717 44681717 C T SLC12A5 Silent p.H856H 0.40 TCGA-CM-5344-01 20 49621145 49621145 G A KCNG1 Missense_Mutation p.R325C 0.38 tolerated(0.05) possibly_damaging(0.809) TCGA-CM-5344-01 21 46876212 46876212 C T COL18A1 Intron 0.29 TCGA-CM-5344-01 22 16287911 16287911 G A POTEH 5'UTR 0.16 TCGA-CM-5344-01 22 40807666 40807666 C T MKL1 Missense_Mutation p.D842N 0.43 deleterious(0) probably_damaging(0.981) TCGA-CM-5344-01 2 109527405 109527405 G - EDAR Frame_Shift_Del p.P218Qfs*16 0.21 TCGA-CM-5344-01 2 167151121 167151121 C A SCN9A Missense_Mutation p.S318I 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-CM-5344-01 2 175440059 175440059 G A WIPF1 Silent p.G77G 0.15 TCGA-CM-5344-01 2 179536961 179536961 G A TTN Missense_Mutation p.A11655V 0.22 TCGA-CM-5344-01 2 179783468 179783468 G A CCDC141 Missense_Mutation p.A355V 0.39 deleterious(0.02) probably_damaging(0.926) TCGA-CM-5344-01 2 204267450 204267450 G T ABI2 Missense_Mutation p.Q328H 0.17 deleterious(0.04) benign(0.069) TCGA-CM-5344-01 2 207527790 207527790 G A DYTN Silent p.D490D 0.18 TCGA-CM-5344-01 2 215802332 215802332 G A ABCA12 Nonsense_Mutation p.R2482* 0.17 TCGA-CM-5344-01 2 85809050 85809050 C T VAMP8 3'UTR 0.58 TCGA-CM-5344-01 3 126137497 126137497 C T CCDC37 Missense_Mutation p.T177M 0.41 tolerated(0.14) benign(0.001) TCGA-CM-5344-01 3 40570900 40570900 G T ZNF621 Missense_Mutation p.V39L 0.29 deleterious(0) probably_damaging(0.994) TCGA-CM-5344-01 3 44945455 44945455 G A TGM4 Missense_Mutation p.A351T 0.33 deleterious(0.01) possibly_damaging(0.892) TCGA-CM-5344-01 3 77657041 77657041 C G ROBO2 Missense_Mutation p.P1093A 0.19 tolerated(0.13) possibly_damaging(0.539) TCGA-CM-5344-01 4 11401435 11401435 G A HS3ST1 Silent p.G65G 0.61 TCGA-CM-5344-01 4 13604014 13604014 C G BOD1L1 Missense_Mutation p.D1504H 0.25 benign(0.003) TCGA-CM-5344-01 4 167675586 167675586 T C SPOCK3 Intron 0.56 TCGA-CM-5344-01 5 112175399 112175399 A T APC Nonsense_Mutation p.K1370* 0.57 TCGA-CM-5344-01 5 118506830 118506830 A T DMXL1 Missense_Mutation p.N2115I 0.28 tolerated(0.15) benign(0.001) TCGA-CM-5344-01 5 140953350 140953350 T G DIAPH1 Silent p.P689P 0.24 TCGA-CM-5344-01 5 172744706 172744706 C T STC2 3'UTR 0.67 TCGA-CM-5344-01 5 3596416 3596416 C T IRX1 Missense_Mutation p.A66V 0.32 tolerated(0.29) possibly_damaging(0.499) TCGA-CM-5344-01 5 73193831 73193831 G A ARHGEF28 Missense_Mutation p.V1296M 0.25 tolerated(0.11) benign(0.011) TCGA-CM-5344-01 6 152738068 152738068 C T SYNE1 Missense_Mutation p.R1835H 0.21 benign(0.001) TCGA-CM-5344-01 6 169617695 169617695 T C THBS2 3'UTR 0.20 TCGA-CM-5344-01 6 51619603 51619603 G A PKHD1 Missense_Mutation p.R2926W 0.15 deleterious(0) possibly_damaging(0.901) TCGA-CM-5344-01 7 108112954 108112954 T G PNPLA8 Missense_Mutation p.K747T 0.12 deleterious(0) possibly_damaging(0.84) TCGA-CM-5344-01 7 149430329 149430329 G A KRBA1 Silent p.P761P 0.10 TCGA-CM-5344-01 7 151845262 151845262 G A KMT2C Missense_Mutation p.R4584W 0.39 probably_damaging(1) TCGA-CM-5344-01 7 21737769 21737769 C T DNAH11 Missense_Mutation p.R2047C 0.34 probably_damaging(0.988) TCGA-CM-5344-01 7 43917441 43917441 C T URGCP Missense_Mutation p.G541S 0.36 tolerated(1) benign(0.003) TCGA-CM-5344-01 7 94294332 94294332 C A PEG10 3'UTR 0.47 TCGA-CM-5344-01 8 124664168 124664168 G A KLHL38 Silent p.S333S 0.20 TCGA-CM-5344-01 8 145542152 145542152 C G DGAT1 Silent p.V182V 0.12 TCGA-CM-5344-01 8 146156789 146156789 C T ZNF16 Missense_Mutation p.V462M 0.18 tolerated(0.07) possibly_damaging(0.671) TCGA-CM-5344-01 8 32585565 32585565 G C NRG1 Missense_Mutation p.D201H 0.19 deleterious(0.01) possibly_damaging(0.834) TCGA-CM-5344-01 9 135538017 135538017 G C DDX31 Missense_Mutation p.N152K 0.29 tolerated(0.23) benign(0.012) TCGA-CM-5344-01 9 136084516 136084518 TCC - OBP2B In_Frame_Del p.E23del 0.24 TCGA-CM-5344-01 9 136501489 136501489 C A DBH 5'UTR 0.37 TCGA-CM-5344-01 9 137968703 137968703 G A OLFM1 Intron 0.27 TCGA-CM-5344-01 9 37745962 37745962 G C FRMPD1 Missense_Mutation p.R1311S 0.53 tolerated(0.75) benign(0.01) TCGA-CM-5344-01 9 84205859 84205859 G A TLE1 Missense_Mutation p.P564S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5344-01 X 107975870 107975870 G A IRS4 Silent p.D1235D 0.05 TCGA-CM-5344-01 X 151900715 151900715 T A MAGEA12 Missense_Mutation p.Q29L 0.06 deleterious(0.03) benign(0.203) TCGA-CM-5344-01 X 19560285 19560285 C T SH3KBP1 Silent p.P550P 0.11 TCGA-CM-5344-01 X 69397504 69397504 C A DGAT2L6 Silent p.V24V 0.26 TCGA-CM-5344-01 X 70521895 70521895 G T ITGB1BP2 Intron 0.08 TCGA-CM-5344-01 X 91090880 91090880 G A PCDH11X Missense_Mutation p.R126H 0.45 deleterious(0) probably_damaging(0.985) TCGA-CM-5348-01 10 115355485 115355485 C T NRAP Missense_Mutation p.R1478H 0.15 tolerated(0.14) benign(0.028) TCGA-CM-5348-01 10 117825121 117825127 GATTTCA - GFRA1 Frame_Shift_Del p.L403Pfs*27 0.14 TCGA-CM-5348-01 10 118084821 118084821 C T CCDC172 Missense_Mutation p.S29L 0.15 tolerated(0.5) benign(0.005) TCGA-CM-5348-01 10 12802972 12802972 C T CAMK1D Missense_Mutation p.R109W 0.08 deleterious(0.04) probably_damaging(1) TCGA-CM-5348-01 10 13174183 13174183 C T OPTN Silent p.F506F 0.13 TCGA-CM-5348-01 10 72503909 72503909 G C ADAMTS14 Missense_Mutation p.V719L 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-CM-5348-01 10 83635710 83635710 C T NRG3 Missense_Mutation p.T205M 0.15 deleterious(0.04) possibly_damaging(0.742) TCGA-CM-5348-01 10 87898742 87898742 C T GRID1 Missense_Mutation p.R187Q 0.32 tolerated(0.65) probably_damaging(0.994) TCGA-CM-5348-01 10 95720262 95720262 G A PIPSL RNA 0.26 TCGA-CM-5348-01 10 97604315 97604330 GCCAGGATCATTACTG - ENTPD1 Frame_Shift_Del p.R179Kfs*27 0.09 TCGA-CM-5348-01 10 97779418 97779418 T C CC2D2B Intron 0.26 TCGA-CM-5348-01 10 98078205 98078205 G A DNTT Silent p.E100E 0.07 TCGA-CM-5348-01 11 1015922 1015922 C T MUC6 Silent p.T2293T 0.28 TCGA-CM-5348-01 11 105804542 105804542 G A GRIA4 Missense_Mutation p.R714H 0.22 deleterious(0) probably_damaging(0.998) TCGA-CM-5348-01 11 1265192 1265192 G A MUC5B Missense_Mutation p.R2361H 0.40 unknown(0) TCGA-CM-5348-01 11 47074048 47074048 C T C11orf49 Nonsense_Mutation p.R87* 0.25 TCGA-CM-5348-01 11 59812239 59812239 C T OOSP2 Silent p.S113S 0.27 TCGA-CM-5348-01 11 64056791 64056791 C T GPR137 Missense_Mutation p.P461L 0.15 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-CM-5348-01 11 6579854 6579854 G T DNHD1 Missense_Mutation p.D3048Y 0.24 probably_damaging(0.935) TCGA-CM-5348-01 11 66191109 66191109 G C NPAS4 Missense_Mutation p.G290A 0.22 tolerated(0.47) benign(0.005) TCGA-CM-5348-01 11 67290853 67290853 C T CABP2 5'UTR 0.39 TCGA-CM-5348-01 11 7818114 7818114 G C OR5P2 Missense_Mutation p.L126V 0.19 deleterious(0) probably_damaging(1) TCGA-CM-5348-01 11 78523217 78523217 G A TENM4 Missense_Mutation p.T643M 0.27 tolerated(0.13) benign(0.001) TCGA-CM-5348-01 11 788208 788208 G T CEND1 Missense_Mutation p.N123K 0.22 tolerated_low_confidence(0.71) benign(0.052) TCGA-CM-5348-01 12 105454760 105454760 T G ALDH1L2 Silent p.R380R 0.17 TCGA-CM-5348-01 12 123780456 123780456 C T SBNO1 Silent p.%3D 0.27 TCGA-CM-5348-01 12 15776183 15776183 A G EPS8 Missense_Mutation p.L755P 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-5348-01 12 48361005 48361005 T C TMEM106C Missense_Mutation p.V206A 0.10 deleterious(0.01) benign(0.077) TCGA-CM-5348-01 12 49399278 49399278 G C PRKAG1 Missense_Mutation p.P73A 0.28 deleterious(0) probably_damaging(0.972) TCGA-CM-5348-01 12 6838559 6838559 C T COPS7A Silent p.I158I 0.57 TCGA-CM-5348-01 12 68875 68875 C T RP11-598F7.1 RNA 0.76 TCGA-CM-5348-01 12 71077918 71077918 C G PTPRR Missense_Mutation p.E496Q 0.22 deleterious(0) probably_damaging(1) TCGA-CM-5348-01 12 78582081 78582081 C A NAV3 Silent p.T1926T 0.28 TCGA-CM-5348-01 12 95228577 95228577 G A MIR492 3'Flank 0.28 TCGA-CM-5348-01 13 36167523 36167523 G A NBEA Missense_Mutation p.R2412Q 0.18 deleterious(0.01) benign(0.199) TCGA-CM-5348-01 13 36686045 36686045 C T DCLK1 Silent p.S228S 0.24 TCGA-CM-5348-01 13 42875359 42875359 G C AKAP11 Missense_Mutation p.R826T 0.23 tolerated(0.1) benign(0.008) TCGA-CM-5348-01 13 47466637 47466637 G A HTR2A Silent p.C167C 0.47 TCGA-CM-5348-01 13 50293927 50293927 T C KPNA3 Missense_Mutation p.Y252C 0.15 deleterious(0.02) possibly_damaging(0.684) TCGA-CM-5348-01 13 52855071 52855071 G A RP11-248G5.8 RNA 0.08 TCGA-CM-5348-01 13 78218458 78218458 G T SCEL 3'UTR 0.45 TCGA-CM-5348-01 13 78493584 78493584 G A EDNRB Missense_Mutation p.P56L 0.22 tolerated_low_confidence(0.2) benign(0) TCGA-CM-5348-01 13 95131418 95131418 G A DCT Missense_Mutation p.T31M 0.19 deleterious(0) probably_damaging(0.999) TCGA-CM-5348-01 14 19988078 19988078 C T POTEM 3'UTR 0.07 TCGA-CM-5348-01 14 20979011 20979011 G A RNASE10 Missense_Mutation p.M127I 0.31 tolerated(1) benign(0.002) TCGA-CM-5348-01 14 50863982 50863985 TGTC - CDKL1 5'Flank 0.26 TCGA-CM-5348-01 14 73959406 73959406 G A HEATR4 Intron 0.25 TCGA-CM-5348-01 14 94395292 94395292 C T FAM181A Nonsense_Mutation p.Q283* 0.22 TCGA-CM-5348-01 15 23812905 23812905 C A MKRN3 3'UTR 0.24 TCGA-CM-5348-01 15 24921632 24921632 G T NPAP1 Silent p.G206G 0.33 TCGA-CM-5348-01 15 29406125 29406125 G T APBA2 Missense_Mutation p.R695L 0.14 deleterious(0) possibly_damaging(0.511) TCGA-CM-5348-01 15 34134209 34134209 G C RYR3 Silent p.G4394G 0.16 TCGA-CM-5348-01 15 63958266 63958266 C T HERC1 Missense_Mutation p.E2803K 0.30 benign(0.156) TCGA-CM-5348-01 15 67482855 67482855 G A SMAD3 Missense_Mutation p.R420H 0.33 tolerated(0.07) benign(0) TCGA-CM-5348-01 15 75189523 75189523 A G MPI Missense_Mutation p.D339G 0.17 tolerated(0.07) benign(0.371) TCGA-CM-5348-01 15 80450355 80450355 C T FAH Intron 0.24 TCGA-CM-5348-01 15 99670166 99670166 A T SYNM Missense_Mutation p.E533V 0.22 deleterious(0) probably_damaging(0.993) TCGA-CM-5348-01 16 10788404 10788404 C A TEKT5 Silent p.R109R 0.27 TCGA-CM-5348-01 16 10788468 10788468 C T TEKT5 Missense_Mutation p.R88H 0.23 deleterious(0) probably_damaging(0.991) TCGA-CM-5348-01 16 1306905 1306915 ACATCATCCAG - TPSD1 Frame_Shift_Del p.I122Rfs*48 0.09 TCGA-CM-5348-01 16 24580389 24580389 G A RBBP6 Missense_Mutation p.R793H 0.07 deleterious_low_confidence(0.03) unknown(0) TCGA-CM-5348-01 16 30017613 30017613 C T DOC2A Missense_Mutation p.R366Q 0.47 tolerated(0.17) benign(0.005) TCGA-CM-5348-01 16 4747086 4747086 C G ANKS3 Silent p.V638V 0.25 TCGA-CM-5348-01 16 67914493 67914493 C A EDC4 Missense_Mutation p.L711M 0.05 tolerated_low_confidence(0.09) possibly_damaging(0.794) TCGA-CM-5348-01 16 75512868 75512868 G C CHST6 Missense_Mutation p.L287V 0.13 deleterious(0.01) possibly_damaging(0.522) TCGA-CM-5348-01 16 75513690 75513690 C T CHST6 Missense_Mutation p.A13T 0.39 tolerated(0.3) benign(0.038) TCGA-CM-5348-01 16 88788317 88788317 C T PIEZO1 Missense_Mutation p.A1705T 0.18 tolerated(0.06) possibly_damaging(0.797) TCGA-CM-5348-01 17 16347094 16347094 G C FAM211A Missense_Mutation p.F281L 0.27 tolerated(1) probably_damaging(0.979) TCGA-CM-5348-01 17 17898317 17898317 C T LRRC48 Missense_Mutation p.A239V 0.55 deleterious(0) probably_damaging(0.985) TCGA-CM-5348-01 17 2861061 2861061 G A RAP1GAP2 Silent p.E58E 0.57 TCGA-CM-5348-01 17 29161268 29161268 C G ATAD5 Missense_Mutation p.P57A 0.07 deleterious(0.01) possibly_damaging(0.497) TCGA-CM-5348-01 17 34192384 34192384 A C C17orf66 Missense_Mutation p.F52C 0.15 deleterious(0) possibly_damaging(0.885) TCGA-CM-5348-01 17 40328231 40328231 C T KCNH4 Missense_Mutation p.V224I 0.52 tolerated(0.89) benign(0.001) TCGA-CM-5348-01 17 42828577 42828577 C G DBF4B Missense_Mutation p.Q602E 0.56 deleterious_low_confidence(0) benign(0.042) TCGA-CM-5348-01 17 534815 534815 T A VPS53 Missense_Mutation p.E221V 0.16 deleterious(0.02) possibly_damaging(0.823) TCGA-CM-5348-01 17 53798279 53798279 G T TMEM100 Silent p.L51L 0.39 TCGA-CM-5348-01 17 53798280 53798280 A T TMEM100 Missense_Mutation p.L51H 0.39 tolerated(0.23) probably_damaging(0.999) TCGA-CM-5348-01 17 55944765 55944765 G A CUEDC1 Missense_Mutation p.A349V 0.13 deleterious(0) possibly_damaging(0.703) TCGA-CM-5348-01 17 61557143 61557143 C T ACE Silent p.I175I 0.45 TCGA-CM-5348-01 17 6674018 6674018 A T XAF1 Missense_Mutation p.E188D 0.35 tolerated(0.49) benign(0.001) TCGA-CM-5348-01 17 72589322 72589322 C T C17orf77 3'UTR 0.52 TCGA-CM-5348-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.48 deleterious(0) probably_damaging(0.99) TCGA-CM-5348-01 18 25573584 25573584 C T CDH2 Silent p.T346T 0.30 TCGA-CM-5348-01 18 44555102 44555102 G A TCEB3C Missense_Mutation p.T371M 0.11 deleterious(0) possibly_damaging(0.708) TCGA-CM-5348-01 18 59713144 59713144 A C PIGN Missense_Mutation p.L914R 0.22 deleterious(0) benign(0.395) TCGA-CM-5348-01 19 1506633 1506633 C T ADAMTSL5 Missense_Mutation p.R357H 0.54 deleterious(0) possibly_damaging(0.762) TCGA-CM-5348-01 19 31769978 31769978 C T TSHZ3 Missense_Mutation p.D241N 0.31 deleterious(0) probably_damaging(0.999) TCGA-CM-5348-01 19 37368135 37368135 C T ZNF345 Missense_Mutation p.H135Y 0.25 tolerated(0.16) benign(0.005) TCGA-CM-5348-01 19 38964031 38964031 C T RYR1 Silent p.D1260D 0.49 TCGA-CM-5348-01 19 39075709 39075709 G A RYR1 Missense_Mutation p.V4925I 0.04 possibly_damaging(0.488) TCGA-CM-5348-01 19 53884680 53884680 T C ZNF525 Missense_Mutation p.M283T 0.58 tolerated(0.51) benign(0.001) TCGA-CM-5348-01 19 55494262 55494262 C T NLRP2 Missense_Mutation p.A399V 0.58 deleterious(0.03) possibly_damaging(0.492) TCGA-CM-5348-01 19 56029479 56029479 C T SSC5D Missense_Mutation p.T1279M 0.26 unknown(0) TCGA-CM-5348-01 19 56162761 56162761 G A CCDC106 Silent p.A142A 0.33 TCGA-CM-5348-01 19 58639091 58639091 C T ZNF329 3'UTR 0.07 TCGA-CM-5348-01 19 6828648 6828648 G A VAV1 Missense_Mutation p.V370M 0.55 deleterious(0) probably_damaging(1) TCGA-CM-5348-01 19 6924730 6924730 C T EMR1 Silent p.I611I 0.08 TCGA-CM-5348-01 19 6924770 6924770 C T EMR1 Silent p.L625L 0.09 TCGA-CM-5348-01 19 7999055 7999055 C T TIMM44 Silent p.K154K 0.60 TCGA-CM-5348-01 1 11589626 11589626 G A PTCHD2 Missense_Mutation p.A938T 0.23 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-CM-5348-01 1 145583955 145583955 G A PIAS3 Missense_Mutation p.E396K 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-5348-01 1 150529435 150529435 C T ADAMTSL4 Silent p.N590N 0.24 TCGA-CM-5348-01 1 152285000 152285000 G A FLG Nonsense_Mutation p.R788* 0.25 TCGA-CM-5348-01 1 152733284 152733284 G A KPRP Missense_Mutation p.R407H 0.42 tolerated(0.58) benign(0.058) TCGA-CM-5348-01 1 160720161 160720162 TC - SLAMF7 Frame_Shift_Del p.F241Cfs*19 0.18 TCGA-CM-5348-01 1 171553263 171553263 A G PRRC2C Silent p.E2524E 0.22 TCGA-CM-5348-01 1 186113334 186113334 T A HMCN1 Missense_Mutation p.W4652R 0.16 benign(0.398) TCGA-CM-5348-01 1 213125130 213125130 C T VASH2 Silent p.G82G 0.15 TCGA-CM-5348-01 1 227071480 227071480 G A PSEN2 Silent p.P72P 0.27 TCGA-CM-5348-01 1 228602589 228602589 C T TRIM17 Missense_Mutation p.C62Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CM-5348-01 1 229567918 229567918 C T ACTA1 Missense_Mutation p.V211M 0.07 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-CM-5348-01 1 229737795 229737795 T G TAF5L Intron 0.28 TCGA-CM-5348-01 1 24121305 24121305 C T LYPLA2 3'UTR 0.15 TCGA-CM-5348-01 1 243858956 243858956 C T AKT3 Missense_Mutation p.G37R 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-CM-5348-01 1 246907408 246907408 C T SCCPDH Missense_Mutation p.T182I 0.03 deleterious(0.02) benign(0.063) TCGA-CM-5348-01 1 248020590 248020590 G A TRIM58 Silent p.A14A 0.09 TCGA-CM-5348-01 1 248085182 248085182 A G OR2T8 Missense_Mutation p.Y288C 0.32 deleterious(0) probably_damaging(0.986) TCGA-CM-5348-01 1 32205032 32205032 G A BAI2 Missense_Mutation p.T791M 0.23 tolerated_low_confidence(0.17) possibly_damaging(0.493) TCGA-CM-5348-01 1 32676872 32676872 G A DCDC2B Splice_Site p.X89_splice 0.20 TCGA-CM-5348-01 1 36068965 36068965 C T PSMB2 Missense_Mutation p.R170H 0.23 deleterious(0) probably_damaging(1) TCGA-CM-5348-01 1 43212437 43212437 C T LEPRE1 3'UTR 0.14 TCGA-CM-5348-01 1 75685012 75685012 C G SLC44A5 Missense_Mutation p.G399A 0.40 deleterious(0) probably_damaging(0.998) TCGA-CM-5348-01 1 76877919 76877919 C T ST6GALNAC3 Missense_Mutation p.A147V 0.45 benign(0.269) TCGA-CM-5348-01 1 78408367 78408367 C T NEXN Silent p.D627D 0.18 TCGA-CM-5348-01 1 78444675 78444675 G A FUBP1 Missense_Mutation p.S5L 0.11 deleterious(0) benign(0.001) TCGA-CM-5348-01 1 91781509 91781509 C T HFM1 Silent p.T1001T 0.55 TCGA-CM-5348-01 1 99772247 99772247 G A LPPR4 Missense_Mutation p.R658H 0.18 tolerated(0.07) probably_damaging(0.964) TCGA-CM-5348-01 20 21687491 21687491 C T PAX1 Silent p.Y234Y 0.11 TCGA-CM-5348-01 20 23472484 23472484 C T CST8 Silent p.S60S 0.06 TCGA-CM-5348-01 20 30640273 30640273 G A HCK Missense_Mutation p.E16K 0.52 tolerated_low_confidence(0.32) benign(0.054) TCGA-CM-5348-01 20 31984716 31984716 C T CDK5RAP1 Missense_Mutation p.R52Q 0.10 tolerated(0.8) benign(0.001) TCGA-CM-5348-01 20 36431330 36431330 G A CTNNBL1 Missense_Mutation p.E365K 0.20 tolerated(0.18) possibly_damaging(0.537) TCGA-CM-5348-01 20 37356910 37356910 C T SLC32A1 Silent p.V402V 0.16 TCGA-CM-5348-01 20 44750872 44750872 G T CD40 Missense_Mutation p.G44V 0.26 deleterious(0) probably_damaging(1) TCGA-CM-5348-01 20 50139646 50139646 C T NFATC2 Silent p.P378P 0.19 TCGA-CM-5348-01 20 56098759 56098759 T A CTCFL Missense_Mutation p.K168M 0.24 deleterious(0) possibly_damaging(0.864) TCGA-CM-5348-01 20 62187703 62187703 C T C20orf195 Silent p.F229F 0.12 TCGA-CM-5348-01 21 11012953 11012953 G A TPTE RNA 0.08 TCGA-CM-5348-01 21 34823147 34823147 C T TMEM50B Missense_Mutation p.R152K 0.12 deleterious(0.05) possibly_damaging(0.521) TCGA-CM-5348-01 21 41719645 41719645 G A DSCAM Missense_Mutation p.R388C 0.30 deleterious(0.04) probably_damaging(0.959) TCGA-CM-5348-01 22 18032705 18032705 G T CECR2 3'UTR 0.57 TCGA-CM-5348-01 22 19175227 19175227 G C CLTCL1 Missense_Mutation p.S1483C 0.10 deleterious(0) probably_damaging(0.991) TCGA-CM-5348-01 22 22453347 22453347 G A IGLV8-61 Silent p.E31E 0.25 TCGA-CM-5348-01 22 25016310 25016310 C T GGT1 Missense_Mutation p.A133V 0.44 deleterious(0) probably_damaging(0.996) TCGA-CM-5348-01 22 50716157 50716157 G A PLXNB2 Missense_Mutation p.R1687W 0.52 deleterious(0) probably_damaging(1) TCGA-CM-5348-01 22 50728611 50728611 C T PLXNB2 Missense_Mutation p.E135K 0.14 tolerated(0.55) benign(0.098) TCGA-CM-5348-01 2 102456283 102456283 C T MAP4K4 Missense_Mutation p.S259L 0.23 deleterious_low_confidence(0) unknown(0) TCGA-CM-5348-01 2 121043611 121043611 G T RALB Silent p.V92V 0.21 TCGA-CM-5348-01 2 128409077 128409077 C T GPR17 Silent p.S284S 0.24 TCGA-CM-5348-01 2 168102759 168102772 TGAAAGAGAGATTT - XIRP2 Frame_Shift_Del p.E1620Dfs*2 0.28 TCGA-CM-5348-01 2 170011109 170011109 G C LRP2 Missense_Mutation p.S4052R 0.14 benign(0.067) TCGA-CM-5348-01 2 170411661 170411661 A T FASTKD1 Missense_Mutation p.F396Y 0.15 tolerated(0.13) possibly_damaging(0.541) TCGA-CM-5348-01 2 179569335 179569335 C T TTN Missense_Mutation p.R9955Q 0.23 TCGA-CM-5348-01 2 192700908 192700908 G A SDPR Missense_Mutation p.A340V 0.32 tolerated(0.24) benign(0.006) TCGA-CM-5348-01 2 210783316 210783316 C A UNC80 Missense_Mutation p.P1692T 0.27 probably_damaging(0.996) TCGA-CM-5348-01 2 21233230 21233230 T G APOB Missense_Mutation p.K2170N 0.43 benign(0.018) TCGA-CM-5348-01 2 220116301 220116301 G A TUBA4A Missense_Mutation p.R121W 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.867) TCGA-CM-5348-01 2 226447270 226447270 G A NYAP2 Silent p.S379S 0.26 TCGA-CM-5348-01 2 231405697 231405697 C T SP100 Missense_Mutation p.P773S 0.33 deleterious(0.05) possibly_damaging(0.803) TCGA-CM-5348-01 2 23918521 23918521 G A KLHL29 Missense_Mutation p.R524H 0.21 deleterious(0) probably_damaging(0.996) TCGA-CM-5348-01 2 240981384 240981384 G A PRR21 Missense_Mutation p.S339F 0.17 tolerated_low_confidence(0.05) unknown(0) TCGA-CM-5348-01 2 27930554 27930554 G A AC074091.13 Missense_Mutation p.P160L 0.44 possibly_damaging(0.851) TCGA-CM-5348-01 2 48982683 48982683 C T LHCGR Missense_Mutation p.R43H 0.23 deleterious(0.02) benign(0.444) TCGA-CM-5348-01 2 98340854 98340854 C T ZAP70 Nonsense_Mutation p.R119* 0.23 TCGA-CM-5348-01 3 113866363 113866363 G A DRD3 Missense_Mutation p.T142M 0.28 deleterious(0) probably_damaging(0.952) TCGA-CM-5348-01 3 123953791 123953791 G T KALRN Splice_Site p.X86_splice 0.22 TCGA-CM-5348-01 3 141462371 141462371 G A RNF7 Missense_Mutation p.A66T 0.22 deleterious(0.03) benign(0.057) TCGA-CM-5348-01 3 141462372 141462372 C T RNF7 Missense_Mutation p.A66V 0.22 deleterious(0) possibly_damaging(0.624) TCGA-CM-5348-01 3 196386948 196386948 C T NRROS Missense_Mutation p.T145M 0.37 deleterious(0) probably_damaging(0.965) TCGA-CM-5348-01 3 27439285 27439285 G A SLC4A7 Nonsense_Mutation p.R856* 0.23 TCGA-CM-5348-01 3 37038152 37038152 G C MLH1 Missense_Mutation p.E53D 0.20 tolerated(0.64) benign(0.013) TCGA-CM-5348-01 3 38404475 38404475 C G XYLB Missense_Mutation p.F86L 0.22 tolerated(0.2) benign(0.023) TCGA-CM-5348-01 3 38655282 38655282 G A SCN5A Intron 0.08 TCGA-CM-5348-01 3 45801358 45801358 G A SLC6A20 Silent p.D540D 0.25 TCGA-CM-5348-01 3 46875266 46875266 C T PRSS42 Intron 0.29 TCGA-CM-5348-01 3 49049641 49049641 C T WDR6 Missense_Mutation p.A255V 0.29 deleterious(0) probably_damaging(0.955) TCGA-CM-5348-01 3 55107804 55107804 A G CACNA2D3 Missense_Mutation p.Y1034C 0.34 deleterious(0) possibly_damaging(0.514) TCGA-CM-5348-01 3 56173634 56173634 G A ERC2 Missense_Mutation p.T459I 0.25 deleterious(0) possibly_damaging(0.897) TCGA-CM-5348-01 3 98251179 98251179 C T GPR15 Missense_Mutation p.T101M 0.29 tolerated(0.06) probably_damaging(0.94) TCGA-CM-5348-01 4 100738169 100738169 G A DAPP1 Silent p.L33L 0.53 TCGA-CM-5348-01 4 126373166 126373166 T C FAT4 Silent p.T3665T 0.19 TCGA-CM-5348-01 4 128863227 128863227 G A MFSD8 Nonsense_Mutation p.Q176* 0.57 TCGA-CM-5348-01 4 148460972 148460972 C T EDNRA Nonsense_Mutation p.R302* 0.52 TCGA-CM-5348-01 4 159566242 159566242 A G RXFP1 Missense_Mutation p.I433V 0.05 tolerated(0.06) benign(0.034) TCGA-CM-5348-01 4 169158892 169158892 C A DDX60 Missense_Mutation p.D1407Y 0.11 deleterious(0.03) benign(0.212) TCGA-CM-5348-01 4 37440434 37440434 G T KIAA1239 Nonsense_Mutation p.E240* 0.31 TCGA-CM-5348-01 4 4421785 4421785 G A STX18 Silent p.L328L 0.34 TCGA-CM-5348-01 4 5830267 5830267 C T CRMP1 Silent p.P584P 0.18 TCGA-CM-5348-01 4 73156675 73156675 C T ADAMTS3 Missense_Mutation p.R943H 0.23 deleterious(0.02) benign(0.052) TCGA-CM-5348-01 4 85611693 85611693 G A WDFY3 Missense_Mutation p.S3110F 0.59 deleterious(0.01) benign(0.076) TCGA-CM-5348-01 5 102613887 102613887 T C C5orf30 3'UTR 0.11 TCGA-CM-5348-01 5 134705152 134705152 G A H2AFY Nonsense_Mutation p.Q141* 0.28 TCGA-CM-5348-01 5 135610458 135610458 C T TRPC7 Missense_Mutation p.R344H 0.20 deleterious(0.03) benign(0.22) TCGA-CM-5348-01 5 137600086 137600086 C T GFRA3 Silent p.S81S 0.65 TCGA-CM-5348-01 5 13911596 13911596 C A DNAH5 Missense_Mutation p.V515L 0.31 benign(0.299) TCGA-CM-5348-01 5 140559016 140559016 C T PCDHB8 Silent p.P467P 0.11 TCGA-CM-5348-01 5 159835406 159835406 G A SLU7 Missense_Mutation p.P250L 0.39 deleterious(0.02) probably_damaging(0.995) TCGA-CM-5348-01 5 167379775 167379775 G A TENM2 Missense_Mutation p.V299I 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-CM-5348-01 5 37036479 37036479 A T NIPBL Splice_Site p.X1955_splice 0.07 TCGA-CM-5348-01 5 38968126 38968126 G C RICTOR Missense_Mutation p.L327V 0.25 tolerated(0.31) benign(0.338) TCGA-CM-5348-01 5 93856313 93856313 G C KIAA0825 Missense_Mutation p.P204A 0.58 deleterious(0.01) possibly_damaging(0.79) TCGA-CM-5348-01 6 109996871 109996871 C T AK9 Silent p.L26L 0.24 TCGA-CM-5348-01 6 122741289 122741289 T G HSF2 Silent p.L201L 0.08 TCGA-CM-5348-01 6 160888533 160888533 G A LPAL2 Intron 0.25 TCGA-CM-5348-01 6 161134119 161134119 A T PLG Missense_Mutation p.E170V 0.28 tolerated(0.28) benign(0.011) TCGA-CM-5348-01 6 170713637 170713637 G A FAM120B Splice_Site p.X898_splice 0.34 TCGA-CM-5348-01 6 25779515 25779515 C G SLC17A4 3'UTR 0.29 TCGA-CM-5348-01 6 28402110 28402110 G A ZSCAN23 3'UTR 0.26 TCGA-CM-5348-01 6 30672792 30672792 G A MDC1 Missense_Mutation p.R1390W 0.11 tolerated(0.11) benign(0.306) TCGA-CM-5348-01 6 31113031 31113031 C T CCHCR1 Silent p.Q596Q 0.46 TCGA-CM-5348-01 6 32015773 32015773 C T TNXB 5'Flank 0.42 TCGA-CM-5348-01 6 37430662 37430662 C T CMTR1 Silent p.F461F 0.23 TCGA-CM-5348-01 6 37620106 37620106 G A MDGA1 Silent p.N331N 0.42 TCGA-CM-5348-01 6 38891053 38891053 C A DNAH8 Intron 0.32 TCGA-CM-5348-01 6 39846977 39846977 A C DAAM2 Silent p.P523P 0.48 TCGA-CM-5348-01 6 44268985 44268985 G A AARS2 Missense_Mutation p.R901W 0.51 deleterious(0) probably_damaging(0.947) TCGA-CM-5348-01 6 46656583 46656583 G T TDRD6 Missense_Mutation p.D240Y 0.16 deleterious(0) probably_damaging(0.982) TCGA-CM-5348-01 6 55147109 55147109 C T HCRTR2 Nonsense_Mutation p.R398* 0.04 TCGA-CM-5348-01 6 65300136 65300136 G - EYS Frame_Shift_Del p.P1875Lfs*4 0.21 TCGA-CM-5348-01 7 101926530 101926530 C T SH2B2 5'Flank 0.19 TCGA-CM-5348-01 7 142459661 142459661 A C PRSS1 Missense_Mutation p.E79D 0.16 tolerated(0.7) benign(0) TCGA-CM-5348-01 7 143826941 143826941 G A OR2A14 Missense_Mutation p.V246M 0.11 deleterious(0.04) possibly_damaging(0.848) TCGA-CM-5348-01 7 20198106 20198106 T A MACC1 Silent p.S626S 0.12 TCGA-CM-5348-01 7 4116656 4116656 G A SDK1 Missense_Mutation p.G1013S 0.22 tolerated(0.16) benign(0.025) TCGA-CM-5348-01 7 64498776 64498776 G T CCT6P3 RNA 0.08 TCGA-CM-5348-01 7 7278316 7278316 A G C1GALT1 Silent p.K217K 0.11 TCGA-CM-5348-01 7 84702338 84702338 C A SEMA3D Silent p.V145V 0.08 TCGA-CM-5348-01 7 95726873 95726873 G A DYNC1I1 Missense_Mutation p.E636K 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-CM-5348-01 7 97616394 97616394 G A OCM2 Missense_Mutation p.A90V 0.26 deleterious(0.02) benign(0.322) TCGA-CM-5348-01 8 118817120 118817120 G T EXT1 Nonsense_Mutation p.Y632* 0.18 TCGA-CM-5348-01 8 124243594 124243594 T C C8orf76 Missense_Mutation p.E254G 0.53 tolerated(0.15) benign(0.003) TCGA-CM-5348-01 8 124413221 124413221 C T ATAD2 5'Flank 0.51 TCGA-CM-5348-01 8 2092880 2092880 C T MYOM2 Missense_Mutation p.A1458V 0.54 deleterious_low_confidence(0.02) benign(0.243) TCGA-CM-5348-01 8 32617769 32617769 C G NRG1 Missense_Mutation p.I376M 0.05 tolerated(0.43) benign(0.41) TCGA-CM-5348-01 8 41530098 41530098 C T ANK1 Missense_Mutation p.D1665N 0.17 deleterious_low_confidence(0) benign(0.049) TCGA-CM-5348-01 8 4494899 4494899 G A CSMD1 Silent p.Y89Y 0.45 TCGA-CM-5348-01 8 48962476 48962476 C T UBE2V2 Missense_Mutation p.P77S 0.15 deleterious(0.03) benign(0.156) TCGA-CM-5348-01 8 61192349 61192349 G A CA8 Missense_Mutation p.S64L 0.36 tolerated(0.07) benign(0.011) TCGA-CM-5348-01 8 73480145 73480145 C T KCNB2 Missense_Mutation p.T59M 0.45 deleterious(0) probably_damaging(0.998) TCGA-CM-5348-01 9 101552552 101552552 G A ANKS6 Silent p.A232A 0.56 TCGA-CM-5348-01 9 118949481 118949481 T G PAPPA Missense_Mutation p.V155G 0.62 deleterious(0) possibly_damaging(0.637) TCGA-CM-5348-01 9 125512048 125512048 G T OR1L6 5'Flank 0.68 TCGA-CM-5348-01 9 127218941 127218941 G A GPR144 Missense_Mutation p.R497H 0.24 tolerated(0.08) benign(0.155) TCGA-CM-5348-01 9 13123199 13123199 G T MPDZ Silent p.R1636R 0.37 TCGA-CM-5348-01 9 138378868 138378868 G A PPP1R26 Missense_Mutation p.E838K 0.62 deleterious(0) possibly_damaging(0.81) TCGA-CM-5348-01 9 15971861 15971861 G T CCDC171 3'UTR 0.36 TCGA-CM-5348-01 9 80866932 80866932 G A CEP78 Missense_Mutation p.R394H 0.55 deleterious(0) probably_damaging(0.996) TCGA-CM-5348-01 9 88601522 88601522 G A NAA35 Intron 0.75 TCGA-CM-5348-01 9 91666952 91666952 C T SHC3 Missense_Mutation p.R321Q 0.61 deleterious(0) probably_damaging(0.98) TCGA-CM-5348-01 X 102004395 102004395 G A BHLHB9 Missense_Mutation p.D158N 0.72 tolerated(0.48) benign(0.001) TCGA-CM-5348-01 X 128873089 128873089 C T XPNPEP2 5'UTR 0.46 TCGA-CM-5348-01 X 151093358 151093358 C T MAGEA4 3'UTR 0.09 TCGA-CM-5348-01 X 16168589 16168589 C A GRPR Missense_Mutation p.T192N 0.54 tolerated(0.13) probably_damaging(0.946) TCGA-CM-5348-01 X 37312908 37312908 A C PRRG1 3'UTR 0.49 TCGA-CM-5348-01 X 50053943 50053943 T C CCNB3 Missense_Mutation p.V925A 0.57 tolerated(0.72) benign(0.005) TCGA-CM-5348-01 X 50053944 50053944 C A CCNB3 Silent p.V925V 0.57 TCGA-CM-5348-01 X 68749599 68749599 C G FAM155B Missense_Mutation p.P407A 0.11 tolerated(0.3) probably_damaging(0.981) TCGA-CM-5348-01 X 70812015 70812015 T C ACRC Missense_Mutation p.S35P 0.67 possibly_damaging(0.665) TCGA-CM-5348-01 X 92927363 92927363 T C NAP1L3 Missense_Mutation p.Y314C 0.30 deleterious(0) probably_damaging(0.98) TCGA-CM-5348-01 X 92965537 92965537 G A FAM133A 3'UTR 0.05 TCGA-CM-5349-01 10 114910854 114910854 C T TCF7L2 Nonsense_Mutation p.Q325* 0.18 TCGA-CM-5349-01 10 129910264 129910265 - T MKI67 Frame_Shift_Ins p.T672Nfs*4 0.20 TCGA-CM-5349-01 10 17362874 17362874 T C ST8SIA6 3'UTR 0.26 TCGA-CM-5349-01 10 26589801 26589801 T C GAD2 Missense_Mutation p.F557L 0.08 deleterious(0) probably_damaging(0.952) TCGA-CM-5349-01 10 27702946 27702946 C T PTCHD3 Silent p.P78P 0.32 TCGA-CM-5349-01 10 32560497 32560498 AC - EPC1 Frame_Shift_Del p.V808Rfs*9 0.17 TCGA-CM-5349-01 10 6483996 6483996 G A PRKCQ Silent p.F565F 0.22 TCGA-CM-5349-01 11 118373277 118373277 A G KMT2A Missense_Mutation p.R2224G 0.27 benign(0.223) TCGA-CM-5349-01 11 3427806 3427806 G A TSSC2 RNA 0.45 TCGA-CM-5349-01 12 104171670 104171670 G A NT5DC3 Silent p.P528P 0.24 TCGA-CM-5349-01 12 111779831 111779831 C T CUX2 Silent p.T1211T 0.22 TCGA-CM-5349-01 12 120536906 120536906 C T RAB35 Missense_Mutation p.E94K 0.25 tolerated(0.13) benign(0.421) TCGA-CM-5349-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.44 deleterious(0.03) possibly_damaging(0.876) TCGA-CM-5349-01 12 53240064 53240064 C T KRT78 Missense_Mutation p.V225I 0.23 deleterious(0) possibly_damaging(0.604) TCGA-CM-5349-01 12 54427100 54427100 C A HOXC5 Missense_Mutation p.A65D 0.17 tolerated(0.35) benign(0.037) TCGA-CM-5349-01 12 56869405 56869406 - A GLS2 Intron 0.20 TCGA-CM-5349-01 12 72667151 72667151 G A TRHDE Missense_Mutation p.R198Q 0.30 tolerated(0.6) benign(0.089) TCGA-CM-5349-01 13 25480766 25480766 C T CENPJ Silent p.P470P 0.22 TCGA-CM-5349-01 13 29600812 29600812 C T MTUS2 Silent p.D669D 0.29 TCGA-CM-5349-01 13 30091903 30091903 C T SLC7A1 Silent p.L439L 0.36 TCGA-CM-5349-01 13 41303481 41303481 T G MRPS31 3'UTR 0.12 TCGA-CM-5349-01 13 53616068 53616068 T C OLFM4 Silent p.I127I 0.24 TCGA-CM-5349-01 14 103406230 103406230 C A CDC42BPB Missense_Mutation p.R1549L 0.27 deleterious(0.03) probably_damaging(0.96) TCGA-CM-5349-01 14 106780687 106780687 C A IGHV4-28 Missense_Mutation p.Q59H 0.20 deleterious(0.01) possibly_damaging(0.666) TCGA-CM-5349-01 14 86087848 86087848 G A FLRT2 5'UTR 0.26 TCGA-CM-5349-01 14 88478245 88478245 G C GPR65 3'UTR 0.20 TCGA-CM-5349-01 15 100692851 100692851 A T ADAMTS17 Missense_Mutation p.F480Y 0.16 tolerated(0.45) probably_damaging(0.977) TCGA-CM-5349-01 15 20643974 20643974 C A HERC2P3 RNA 0.26 TCGA-CM-5349-01 15 33993251 33993251 G T RYR3 Silent p.A2151A 0.25 TCGA-CM-5349-01 15 34150114 34150114 C T RYR3 Missense_Mutation p.T4714M 0.27 benign(0.269) TCGA-CM-5349-01 15 74914535 74914535 C T CLK3 Silent p.I296I 0.25 TCGA-CM-5349-01 15 75221518 75221518 A C COX5A Missense_Mutation p.F52L 0.19 tolerated(0.07) possibly_damaging(0.497) TCGA-CM-5349-01 15 89390507 89390507 G A ACAN Missense_Mutation p.R488H 0.04 deleterious(0) unknown(0) TCGA-CM-5349-01 16 70969857 70969861 GCTTG TCCTTT HYDIN Frame_Shift_Ins p.N2384Kfs*24 0.13 TCGA-CM-5349-01 17 18167806 18167806 C T MIEF2 Missense_Mutation p.R376C 0.17 tolerated(0.08) benign(0.007) TCGA-CM-5349-01 17 2921366 2921366 C T RAP1GAP2 Silent p.R502R 0.30 TCGA-CM-5349-01 17 39023370 39023370 C T KRT12 Silent p.S23S 0.18 TCGA-CM-5349-01 17 39340739 39340739 C T KRTAP4-1 Missense_Mutation p.R123H 0.27 tolerated(0.11) unknown(0) TCGA-CM-5349-01 17 39925768 39925768 T C JUP Missense_Mutation p.K124E 0.23 deleterious(0.01) benign(0.095) TCGA-CM-5349-01 17 46136273 46136273 C G NFE2L1 Missense_Mutation p.S530C 0.27 deleterious(0.02) probably_damaging(0.95) TCGA-CM-5349-01 17 5290407 5290407 A G NUP88 Missense_Mutation p.F647S 0.09 deleterious(0.01) benign(0.284) TCGA-CM-5349-01 17 57288383 57288383 A G SMG8 Missense_Mutation p.N324S 0.22 deleterious(0.02) possibly_damaging(0.728) TCGA-CM-5349-01 17 76178728 76178728 C T TK1 Missense_Mutation p.R82Q 0.31 tolerated(0.52) benign(0.014) TCGA-CM-5349-01 17 76227727 76227727 C A TMEM235 5'Flank 0.08 TCGA-CM-5349-01 17 8157274 8157274 T G PFAS Missense_Mutation p.F7V 0.22 tolerated(0.08) benign(0.21) TCGA-CM-5349-01 18 63530106 63530106 G A CDH7 Missense_Mutation p.S606N 0.31 deleterious(0) possibly_damaging(0.889) TCGA-CM-5349-01 19 10335095 10335095 C T S1PR2 Missense_Mutation p.G163S 0.28 deleterious(0.05) probably_damaging(0.918) TCGA-CM-5349-01 19 17032769 17032769 C T CPAMD8 Missense_Mutation p.R1239H 0.23 tolerated(0.68) benign(0.019) TCGA-CM-5349-01 19 17893911 17893911 G A FCHO1 Missense_Mutation p.V675I 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-CM-5349-01 19 41893466 41893466 G A EXOSC5 Missense_Mutation p.R190W 0.05 tolerated(0.08) benign(0.014) TCGA-CM-5349-01 19 42857654 42857654 C T MEGF8 Silent p.P1129P 0.29 TCGA-CM-5349-01 19 43414919 43414919 C T PSG6 Silent p.P173P 0.27 TCGA-CM-5349-01 19 46807258 46807258 G A HIF3A Missense_Mutation p.A44T 0.24 deleterious(0.04) probably_damaging(0.982) TCGA-CM-5349-01 19 49254086 49254086 C T FUT1 Silent p.S151S 0.18 TCGA-CM-5349-01 19 55045145 55045145 G A KIR3DX1 Missense_Mutation p.A89T 0.10 tolerated(0.05) probably_damaging(1) TCGA-CM-5349-01 19 57988675 57988676 - GCT ZNF772 Translation_Start_Site p.M1? 0.24 TCGA-CM-5349-01 19 58050196 58050196 C T ZNF549 Silent p.T608T 0.43 TCGA-CM-5349-01 19 6586005 6586006 - A CD70 3'UTR 0.33 TCGA-CM-5349-01 1 114680442 114680442 C T SYT6 Missense_Mutation p.R164H 0.25 deleterious(0.03) possibly_damaging(0.791) TCGA-CM-5349-01 1 117660717 117660717 T G TRIM45 Missense_Mutation p.E387D 0.26 tolerated(0.25) benign(0.007) TCGA-CM-5349-01 1 11887244 11887244 C T CLCN6 Missense_Mutation p.S269L 0.40 deleterious(0) probably_damaging(0.949) TCGA-CM-5349-01 1 149884923 149884923 C T SV2A Missense_Mutation p.R157Q 0.25 tolerated(1) benign(0) TCGA-CM-5349-01 1 156108922 156108922 G C LMNA 3'UTR 0.32 TCGA-CM-5349-01 1 156219622 156219622 G A SMG5 3'UTR 0.09 TCGA-CM-5349-01 1 158736111 158736111 T A OR6N1 Missense_Mutation p.D121V 0.28 deleterious(0.01) probably_damaging(1) TCGA-CM-5349-01 1 159021638 159021638 G A IFI16 Missense_Mutation p.R556Q 0.19 tolerated(1) benign(0.033) TCGA-CM-5349-01 1 159683633 159683633 C T CRP Silent p.E119E 0.12 TCGA-CM-5349-01 1 186081959 186081959 C T HMCN1 Nonsense_Mutation p.R3669* 0.11 TCGA-CM-5349-01 1 198828209 198828209 C T MIR181A1 RNA 0.31 TCGA-CM-5349-01 1 200960822 200960822 C T KIF21B Missense_Mutation p.R806Q 0.29 deleterious(0) probably_damaging(0.978) TCGA-CM-5349-01 1 201858133 201858133 C T SHISA4 Missense_Mutation p.A4V 0.08 tolerated_low_confidence(0.05) benign(0.006) TCGA-CM-5349-01 1 205210708 205210708 C T TMCC2 Missense_Mutation p.R95W 0.41 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-CM-5349-01 1 228109476 228109476 C T WNT9A Missense_Mutation p.D281N 0.12 tolerated(0.24) possibly_damaging(0.612) TCGA-CM-5349-01 1 243328101 243328101 C T CEP170 Missense_Mutation p.R1054Q 0.06 tolerated(0.1) probably_damaging(0.941) TCGA-CM-5349-01 1 34554600 34554600 G A CSMD2 Nonsense_Mutation p.Q88* 0.20 TCGA-CM-5349-01 1 3662476 3662476 C T TP73-AS1 RNA 0.12 TCGA-CM-5349-01 1 3662477 3662477 T G TP73-AS1 RNA 0.12 TCGA-CM-5349-01 1 51005335 51005335 G A FAF1 Missense_Mutation p.T445M 0.29 deleterious(0.04) benign(0.007) TCGA-CM-5349-01 20 31623427 31623427 G A BPIFB6 Missense_Mutation p.A176T 0.46 deleterious(0) probably_damaging(1) TCGA-CM-5349-01 20 41101199 41101199 G A PTPRT Missense_Mutation p.P386L 0.07 deleterious(0) probably_damaging(1) TCGA-CM-5349-01 20 61956844 61956844 C A COL20A1 Missense_Mutation p.Q1116K 0.17 deleterious(0.01) probably_damaging(0.955) TCGA-CM-5349-01 20 62076132 62076132 G A KCNQ2 Silent p.N190N 0.52 TCGA-CM-5349-01 21 40977833 40977833 C T C21orf88 Intron 0.26 TCGA-CM-5349-01 21 45079587 45079587 G A RRP1B Silent p.Q14Q 0.21 TCGA-CM-5349-01 21 46596251 46596251 C T ADARB1 Missense_Mutation p.P212L 0.28 tolerated(0.74) probably_damaging(0.997) TCGA-CM-5349-01 22 16449378 16449378 G A OR11H1 Missense_Mutation p.R143C 0.34 tolerated(0.06) benign(0.015) TCGA-CM-5349-01 22 43267432 43267432 C T PACSIN2 Nonsense_Mutation p.W464* 0.38 TCGA-CM-5349-01 2 100210199 100210199 G A AFF3 Missense_Mutation p.R667C 0.28 deleterious(0) probably_damaging(0.984) TCGA-CM-5349-01 2 112705129 112705129 G A MERTK Missense_Mutation p.V248M 0.21 deleterious(0.03) probably_damaging(0.983) TCGA-CM-5349-01 2 133541261 133541261 C T NCKAP5 Silent p.P1041P 0.18 TCGA-CM-5349-01 2 168101409 168101409 T A XIRP2 Missense_Mutation p.F1169L 0.20 probably_damaging(0.999) TCGA-CM-5349-01 2 179418943 179418943 A G TTN Missense_Mutation p.V29632A 0.25 TCGA-CM-5349-01 2 198950450 198950450 A G PLCL1 Missense_Mutation p.K737E 0.24 tolerated(0.07) possibly_damaging(0.792) TCGA-CM-5349-01 2 232577857 232577857 A T PTMA 3'UTR 0.03 TCGA-CM-5349-01 2 75100453 75100453 C T HK2 Silent p.G182G 0.31 TCGA-CM-5349-01 3 152175972 152175972 C G MBNL1 Intron 0.28 TCGA-CM-5349-01 3 178957854 178957854 T A KCNMB3 3'Flank 0.26 TCGA-CM-5349-01 3 186502582 186502582 T G EIF4A2 Intron 0.18 TCGA-CM-5349-01 3 20017559 20017559 A G RAB5A Silent p.K112K 0.22 TCGA-CM-5349-01 3 42244100 42244100 C T TRAK1 Missense_Mutation p.R534C 0.21 tolerated(0.08) possibly_damaging(0.766) TCGA-CM-5349-01 3 51864573 51864573 G A IQCF3 Missense_Mutation p.R74Q 0.20 tolerated(0.84) benign(0) TCGA-CM-5349-01 3 69168023 69168023 G A LMOD3 Missense_Mutation p.R495C 0.05 deleterious(0) probably_damaging(0.987) TCGA-CM-5349-01 4 104640416 104640416 C T TACR3 Silent p.T139T 0.30 TCGA-CM-5349-01 4 109681436 109681436 G C ETNPPL Missense_Mutation p.S28W 0.17 deleterious(0.01) possibly_damaging(0.6) TCGA-CM-5349-01 4 156136717 156136717 T G NPY2R 3'UTR 0.17 TCGA-CM-5349-01 4 162508634 162508634 A G FSTL5 Missense_Mutation p.Y330H 0.22 tolerated(0.12) benign(0.001) TCGA-CM-5349-01 4 167020578 167020578 T G TLL1 Missense_Mutation p.F936V 0.05 deleterious(0) probably_damaging(0.982) TCGA-CM-5349-01 4 41988397 41988397 G T DCAF4L1 3'UTR 0.15 TCGA-CM-5349-01 4 5838495 5838495 C T CRMP1 Silent p.A483A 0.24 TCGA-CM-5349-01 4 88235090 88235090 C T HSD17B13 Missense_Mutation p.G194S 0.28 deleterious(0) probably_damaging(0.999) TCGA-CM-5349-01 5 102364751 102364751 C T PAM Silent p.L969L 0.28 TCGA-CM-5349-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.19 TCGA-CM-5349-01 5 112175606 112175606 C - APC Frame_Shift_Del p.P1439Lfs*34 0.19 TCGA-CM-5349-01 5 115298840 115298840 G A AQPEP Missense_Mutation p.V176M 0.37 deleterious(0.01) probably_damaging(0.972) TCGA-CM-5349-01 5 140710282 140710282 A G PCDHGA1 Missense_Mutation p.S11G 0.19 tolerated_low_confidence(0.29) benign(0.005) TCGA-CM-5349-01 5 140751507 140751507 G A PCDHGB3 Missense_Mutation p.A516T 0.32 deleterious(0.02) possibly_damaging(0.88) TCGA-CM-5349-01 5 152873546 152873546 G A GRIA1 Silent p.S57S 0.21 TCGA-CM-5349-01 5 153149797 153149797 C T GRIA1 Missense_Mutation p.R708W 0.21 deleterious(0) probably_damaging(0.968) TCGA-CM-5349-01 5 153436793 153436793 G T MFAP3 3'UTR 0.15 TCGA-CM-5349-01 5 35965797 35965797 T C UGT3A1 Silent p.P178P 0.22 TCGA-CM-5349-01 5 74069700 74069700 G A NSA2 Missense_Mutation p.R177H 0.28 deleterious(0.04) benign(0.002) TCGA-CM-5349-01 5 76989145 76989146 GA T TBCA Frame_Shift_Del p.I64Nfs*19 0.25 TCGA-CM-5349-01 5 88057041 88057041 G A MEF2C Intron 0.22 TCGA-CM-5349-01 6 102483357 102483357 G A GRIK2 Missense_Mutation p.E743K 0.23 deleterious(0) possibly_damaging(0.708) TCGA-CM-5349-01 6 132022514 132022514 C T OR2A4 Missense_Mutation p.E10K 0.27 deleterious(0.05) benign(0.244) TCGA-CM-5349-01 6 24515398 24515398 G T ALDH5A1 Missense_Mutation p.A257S 0.09 tolerated(0.07) benign(0.403) TCGA-CM-5349-01 6 33423693 33423693 T C ZBTB9 Silent p.L272L 0.27 TCGA-CM-5349-01 6 36976712 36976712 C T FGD2 Silent p.V57V 0.42 TCGA-CM-5349-01 6 42713514 42713514 C A TBCC Missense_Mutation p.D100Y 0.33 deleterious(0) probably_damaging(0.993) TCGA-CM-5349-01 6 45514679 45514679 C T RUNX2 Silent p.T401T 0.35 TCGA-CM-5349-01 6 89967533 89967533 G A GABRR2 Silent p.N418N 0.26 TCGA-CM-5349-01 6 90380678 90380678 A C MDN1 Missense_Mutation p.L4639R 0.26 probably_damaging(0.996) TCGA-CM-5349-01 6 96654339 96654339 T A FUT9 3'UTR 0.18 TCGA-CM-5349-01 7 134849581 134849581 G A TMEM140 Missense_Mutation p.G130S 0.18 deleterious(0) probably_damaging(1) TCGA-CM-5349-01 7 44189576 44189576 G A GCK Missense_Mutation p.R192W 0.25 deleterious(0) probably_damaging(0.999) TCGA-CM-5349-01 7 4917441 4917441 G A RADIL Silent p.Y110Y 0.37 TCGA-CM-5349-01 7 5633008 5633008 C T FSCN1 Silent p.V147V 0.06 TCGA-CM-5349-01 7 98515221 98515221 G A TRRAP Silent p.R847R 0.24 TCGA-CM-5349-01 7 99084623 99084623 A T ZNF789 Nonsense_Mutation p.K264* 0.32 TCGA-CM-5349-01 7 99755496 99755496 A C C7orf43 Missense_Mutation p.D159E 0.24 deleterious(0.01) possibly_damaging(0.866) TCGA-CM-5349-01 8 55371653 55371653 C T SOX17 Missense_Mutation p.R115W 0.56 deleterious(0) probably_damaging(0.995) TCGA-CM-5349-01 8 55542239 55542239 C T RP1 Nonsense_Mutation p.R1933* 0.43 TCGA-CM-5349-01 8 73850027 73850027 G A KCNB2 Missense_Mutation p.E813K 0.10 tolerated_low_confidence(0.16) benign(0.022) TCGA-CM-5349-01 9 127572250 127572250 A G OLFML2A Silent p.V506V 0.23 TCGA-CM-5349-01 9 139324859 139324859 C T INPP5E Missense_Mutation p.V558I 0.27 tolerated(0.62) benign(0.069) TCGA-CM-5349-01 9 140946603 140946603 G A CACNA1B Missense_Mutation p.R1257Q 0.24 deleterious(0) probably_damaging(1) TCGA-CM-5349-01 9 16437497 16437497 C T BNC2 Missense_Mutation p.R232H 0.26 tolerated(0.53) benign(0.099) TCGA-CM-5349-01 9 33467829 33467829 G A NOL6 Missense_Mutation p.R488W 0.28 deleterious(0) possibly_damaging(0.846) TCGA-CM-5349-01 9 90266445 90266445 G A DAPK1 Missense_Mutation p.G544R 0.27 deleterious(0) probably_damaging(0.96) TCGA-CM-5349-01 X 109561042 109561042 C T AMMECR1 Silent p.S86S 0.08 TCGA-CM-5349-01 X 153626876 153626876 G A RPL10 Missense_Mutation p.A6T 0.31 deleterious(0.03) benign(0.345) TCGA-CM-5349-01 X 154157082 154157082 G T F8 Silent p.V1661V 0.27 TCGA-CM-5349-01 X 54837360 54837360 G A MAGED2 Missense_Mutation p.R215H 0.24 tolerated(0.06) benign(0.022) TCGA-CM-5349-01 X 68725249 68725249 C T FAM155B Nonsense_Mutation p.R42* 0.07 TCGA-CM-5349-01 X 70753049 70753049 C T OGT 5'UTR 0.22 TCGA-CM-5860-01 10 104171503 104171503 G A PSD Nonsense_Mutation p.R635* 0.33 TCGA-CM-5860-01 10 104184086 104184086 G A CUEDC2 Missense_Mutation p.R116W 0.24 deleterious(0.02) benign(0) TCGA-CM-5860-01 10 27324109 27324109 C G ANKRD26 Missense_Mutation p.K1090N 0.04 deleterious(0) probably_damaging(0.949) TCGA-CM-5860-01 10 98766260 98766260 G A SLIT1 Missense_Mutation p.R1187W 0.39 deleterious(0) possibly_damaging(0.724) TCGA-CM-5860-01 11 1019378 1019378 C T MUC6 Silent p.T1309T 0.20 TCGA-CM-5860-01 11 108811197 108811197 G A DDX10 3'UTR 0.40 TCGA-CM-5860-01 11 113563829 113563829 C T TMPRSS5 Missense_Mutation p.A310T 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-CM-5860-01 11 119545975 119545975 G A PVRL1 Silent p.T299T 0.25 TCGA-CM-5860-01 11 126294745 126294745 G A KIRREL3 Silent p.Y689Y 0.19 TCGA-CM-5860-01 11 3069116 3069116 G A CARS Silent p.D47D 0.18 TCGA-CM-5860-01 11 4471338 4471338 G T OR52K2 Missense_Mutation p.V257L 0.24 deleterious(0.04) benign(0.042) TCGA-CM-5860-01 11 62343467 62343467 C T TUT1 Missense_Mutation p.R613Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-CM-5860-01 11 62863508 62863508 C T SLC22A24 Missense_Mutation p.R342H 0.38 tolerated(0.36) benign(0.038) TCGA-CM-5860-01 11 6291967 6291967 C A CCKBR Missense_Mutation p.L249I 0.21 tolerated(1) benign(0.023) TCGA-CM-5860-01 11 70336480 70336480 G A SHANK2 Missense_Mutation p.R819C 0.09 deleterious(0) probably_damaging(0.91) TCGA-CM-5860-01 11 7981765 7981765 C T NLRP10 Missense_Mutation p.R465H 0.44 tolerated(0.54) benign(0.015) TCGA-CM-5860-01 11 83585505 83585505 C T DLG2 Missense_Mutation p.R508H 0.40 tolerated(0.14) probably_damaging(0.909) TCGA-CM-5860-01 11 92615997 92615997 G A FAT3 Silent p.T4125T 0.32 TCGA-CM-5860-01 11 92624169 92624169 G A FAT3 Missense_Mutation p.G4554S 0.47 benign(0.357) TCGA-CM-5860-01 12 103352235 103352235 C T ASCL1 Silent p.D71D 0.20 TCGA-CM-5860-01 12 109870753 109870753 A G MYO1H Silent p.A651A 0.31 TCGA-CM-5860-01 12 110181908 110181908 A G FAM222A Intron 0.08 TCGA-CM-5860-01 12 110230500 110230500 C T TRPV4 Missense_Mutation p.R594H 0.39 deleterious(0) probably_damaging(1) TCGA-CM-5860-01 12 113596945 113596945 T C CCDC42B 3'UTR 0.43 TCGA-CM-5860-01 12 129190613 129190613 C T TMEM132C Missense_Mutation p.R1034W 0.17 deleterious(0.02) benign(0.013) TCGA-CM-5860-01 12 15035144 15035144 G A MGP Missense_Mutation p.R106C 0.14 tolerated(0.17) probably_damaging(0.978) TCGA-CM-5860-01 12 29757205 29757205 C T TMTC1 Missense_Mutation p.G386S 0.16 tolerated(0.08) probably_damaging(0.994) TCGA-CM-5860-01 12 5154520 5154520 C T KCNA5 Missense_Mutation p.R403C 0.29 deleterious(0) probably_damaging(0.999) TCGA-CM-5860-01 12 6964655 6964655 C T USP5 Nonsense_Mutation p.R68* 0.19 TCGA-CM-5860-01 12 7249712 7249712 C A C1RL Missense_Mutation p.G247C 0.10 deleterious(0) probably_damaging(1) TCGA-CM-5860-01 12 85521717 85521717 C A LRRIQ1 Missense_Mutation p.S1372Y 0.14 tolerated(0.5) benign(0.023) TCGA-CM-5860-01 13 36229854 36229854 G A NBEA Missense_Mutation p.R2756Q 0.09 tolerated(0.2) possibly_damaging(0.489) TCGA-CM-5860-01 13 36788679 36788679 G T SOHLH2 Intron 0.37 TCGA-CM-5860-01 13 49710555 49710555 G A FNDC3A Missense_Mutation p.R193H 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-CM-5860-01 13 58207258 58207258 C A PCDH17 Missense_Mutation p.P193Q 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-CM-5860-01 14 24626765 24626765 G A RNF31 Missense_Mutation p.R882Q 0.42 deleterious(0.02) probably_damaging(0.987) TCGA-CM-5860-01 14 30396570 30396570 G C PRKD1 Missense_Mutation p.S50W 0.20 deleterious(0) probably_damaging(0.927) TCGA-CM-5860-01 15 101109727 101109727 C A LINS Missense_Mutation p.A664S 0.40 tolerated(0.45) benign(0.025) TCGA-CM-5860-01 15 23812533 23812533 A G MKRN3 3'UTR 0.42 TCGA-CM-5860-01 15 25653721 25653721 A C UBE3A Intron 0.33 TCGA-CM-5860-01 15 30011211 30011211 G A TJP1 Silent p.Y1045Y 0.20 TCGA-CM-5860-01 15 43900137 43900137 C A STRC Missense_Mutation p.A1240S 0.41 tolerated(0.53) benign(0.108) TCGA-CM-5860-01 16 20371976 20371976 C A PDILT Missense_Mutation p.V474F 0.30 deleterious(0) probably_damaging(0.971) TCGA-CM-5860-01 16 27373719 27373719 C T IL4R Missense_Mutation p.T349I 0.37 deleterious(0.05) benign(0.22) TCGA-CM-5860-01 16 3615001 3615001 C T NLRC3 Missense_Mutation p.G60S 0.35 tolerated(0.47) benign(0.007) TCGA-CM-5860-01 16 57609382 57609382 C T GPR114 Missense_Mutation p.R507W 0.36 deleterious(0.03) probably_damaging(0.988) TCGA-CM-5860-01 16 66997138 66997138 C A CES3 Missense_Mutation p.Q47K 0.10 tolerated(0.44) possibly_damaging(0.622) TCGA-CM-5860-01 16 82660653 82660653 G A CDH13 5'UTR 0.36 TCGA-CM-5860-01 16 84228662 84228662 C T ADAD2 Intron 0.08 TCGA-CM-5860-01 17 18003749 18003749 G A DRG2 Silent p.K180K 0.49 TCGA-CM-5860-01 17 5425071 5425071 G A NLRP1 Missense_Mutation p.H1186Y 0.10 deleterious(0.02) probably_damaging(1) TCGA-CM-5860-01 17 7579415 7579415 C T TP53 Nonsense_Mutation p.W91* 0.60 TCGA-CM-5860-01 18 12429406 12429407 - GCCTGT SLMO1 3'UTR 0.22 TCGA-CM-5860-01 18 43524011 43524011 A G EPG5 Silent p.F584F 0.60 TCGA-CM-5860-01 18 5396248 5396248 C A EPB41L3 Silent p.V975V 0.57 TCGA-CM-5860-01 19 12223021 12223021 G T ZNF788 Missense_Mutation p.G220V 0.21 deleterious(0) probably_damaging(0.997) TCGA-CM-5860-01 19 12551743 12551743 G A CTD-3105H18.16 5'UTR 0.15 TCGA-CM-5860-01 19 15072860 15072860 C T SLC1A6 Missense_Mutation p.D297N 0.11 tolerated(0.56) benign(0.008) TCGA-CM-5860-01 19 15587325 15587325 C T PGLYRP2 Silent p.A52A 0.38 TCGA-CM-5860-01 19 16666089 16666089 C T SLC35E1 Silent p.S292S 0.18 TCGA-CM-5860-01 19 1805889 1805889 G A ATP8B3 Silent p.D273D 0.29 TCGA-CM-5860-01 19 41111061 41111061 C - LTBP4 Frame_Shift_Del p.P192Rfs*29 0.25 TCGA-CM-5860-01 19 43708084 43708084 G A PSG4 Silent p.R128R 0.15 TCGA-CM-5860-01 19 43708234 43708234 G A PSG4 Silent p.Y78Y 0.27 TCGA-CM-5860-01 19 45207480 45207480 G A CEACAM16 Missense_Mutation p.R192H 0.30 tolerated(0.13) probably_damaging(0.984) TCGA-CM-5860-01 19 4817105 4817105 C T TICAM1 Missense_Mutation p.E429K 0.30 deleterious(0) probably_damaging(0.952) TCGA-CM-5860-01 19 49002994 49002994 C T LMTK3 Silent p.P473P 0.27 TCGA-CM-5860-01 19 53644916 53644916 C A ZNF347 Missense_Mutation p.A390S 0.09 tolerated(0.45) benign(0.002) TCGA-CM-5860-01 19 55699455 55699455 G A PTPRH Silent p.D822D 0.15 TCGA-CM-5860-01 19 55897765 55897765 T C RPL28 Missense_Mutation p.S14P 0.27 deleterious(0.01) possibly_damaging(0.722) TCGA-CM-5860-01 1 103461556 103461556 G A COL11A1 Missense_Mutation p.R762W 0.17 unknown(0) TCGA-CM-5860-01 1 110009711 110009711 C T SYPL2 Missense_Mutation p.R29W 0.25 deleterious(0.01) benign(0.249) TCGA-CM-5860-01 1 116932328 116932328 C T ATP1A1 Missense_Mutation p.T341M 0.19 deleterious(0) probably_damaging(0.999) TCGA-CM-5860-01 1 13036637 13036637 C T PRAMEF22 Missense_Mutation p.R237C 0.05 deleterious(0.01) benign(0.013) TCGA-CM-5860-01 1 156219686 156219686 C T SMG5 3'UTR 0.24 TCGA-CM-5860-01 1 161022576 161022576 C T ARHGAP30 Missense_Mutation p.E226K 0.36 tolerated(0.13) benign(0.097) TCGA-CM-5860-01 1 169519917 169519917 A G F5 Missense_Mutation p.S453P 0.09 deleterious(0.01) probably_damaging(0.943) TCGA-CM-5860-01 1 17281352 17281352 C T CROCC Missense_Mutation p.R1149W 0.23 probably_damaging(0.988) TCGA-CM-5860-01 1 17668607 17668607 G A PADI4 Silent p.T274T 0.41 TCGA-CM-5860-01 1 182847257 182847257 G A DHX9 Missense_Mutation p.R767Q 0.18 deleterious(0) probably_damaging(1) TCGA-CM-5860-01 1 19513101 19513101 G A UBR4 Silent p.S561S 0.21 TCGA-CM-5860-01 1 198671524 198671524 G A PTPRC Missense_Mutation p.G150R 0.22 tolerated(0.11) possibly_damaging(0.799) TCGA-CM-5860-01 1 206769079 206769079 C T EIF2D Silent p.A499A 0.21 TCGA-CM-5860-01 1 209933424 209933424 C T TRAF3IP3 Missense_Mutation p.R14W 0.16 tolerated(0.06) benign(0.015) TCGA-CM-5860-01 1 215848467 215848467 A G USH2A Silent p.P4262P 0.19 TCGA-CM-5860-01 1 39494490 39494490 C T NDUFS5 Nonsense_Mutation p.R32* 0.44 TCGA-CM-5860-01 1 46086068 46086068 G A CCDC17 Missense_Mutation p.T583I 0.35 tolerated(0.14) benign(0.055) TCGA-CM-5860-01 1 86820356 86820356 C T ODF2L Missense_Mutation p.A542T 0.16 tolerated(0.4) benign(0.017) TCGA-CM-5860-01 1 90179192 90179192 C T LRRC8C Missense_Mutation p.R355C 0.24 deleterious(0) probably_damaging(0.996) TCGA-CM-5860-01 1 99470254 99470254 G A LPPR5 5'UTR 0.36 TCGA-CM-5860-01 20 31024843 31024843 A G ASXL1 Missense_Mutation p.K1443R 0.09 deleterious(0) probably_damaging(0.997) TCGA-CM-5860-01 20 31827694 31827694 G A BPIFA1 Missense_Mutation p.G136S 0.34 tolerated(0.22) benign(0.106) TCGA-CM-5860-01 20 32377392 32377392 C T ZNF341 Missense_Mutation p.S671F 0.23 deleterious(0) probably_damaging(0.953) TCGA-CM-5860-01 20 35262928 35262928 C T SLA2 Silent p.S52S 0.10 TCGA-CM-5860-01 20 42875934 42875934 G A GDAP1L1 5'UTR 0.07 TCGA-CM-5860-01 20 47874112 47874112 G C ZNFX1 Missense_Mutation p.R836G 0.43 deleterious(0) probably_damaging(0.925) TCGA-CM-5860-01 20 60749624 60749624 G A SS18L1 Missense_Mutation p.G363D 0.36 deleterious_low_confidence(0) unknown(0) TCGA-CM-5860-01 22 19504124 19504124 C T CDC45 Silent p.T537T 0.08 TCGA-CM-5860-01 22 20819391 20819391 G A KLHL22 Missense_Mutation p.P289L 0.32 deleterious(0.04) benign(0.362) TCGA-CM-5860-01 22 37770104 37770104 G T ELFN2 Missense_Mutation p.L491M 0.29 tolerated(0.27) benign(0.007) TCGA-CM-5860-01 22 46501601 46501601 G T FLJ27365 Intron 0.17 TCGA-CM-5860-01 22 49042495 49042495 C T FAM19A5 Missense_Mutation p.R67C 0.32 deleterious(0) probably_damaging(0.999) TCGA-CM-5860-01 22 50968919 50968919 G T ODF3B Missense_Mutation p.A251E 0.28 tolerated(0.09) benign(0.069) TCGA-CM-5860-01 2 100018712 100018712 C G REV1 Missense_Mutation p.M1213I 0.07 tolerated(0.05) probably_damaging(0.995) TCGA-CM-5860-01 2 105858846 105858846 G A GPR45 Silent p.A177A 0.68 TCGA-CM-5860-01 2 171911675 171911675 G A TLK1 Missense_Mutation p.P186L 0.14 tolerated(0.41) benign(0.001) TCGA-CM-5860-01 2 175427331 175427331 C T WIPF1 Splice_Site p.X486_splice 0.41 TCGA-CM-5860-01 2 179605957 179605957 A G TTN Silent p.P4001P 0.09 TCGA-CM-5860-01 2 193059339 193059339 G A TMEFF2 5'UTR 0.62 TCGA-CM-5860-01 2 220496746 220496746 C A SLC4A3 Silent p.R317R 0.23 TCGA-CM-5860-01 2 31414917 31414917 C T CAPN14 Missense_Mutation p.E388K 0.58 tolerated(0.36) benign(0.269) TCGA-CM-5860-01 2 47049356 47049356 A G LINC01118 3'UTR 0.10 TCGA-CM-5860-01 2 48982653 48982653 C T LHCGR Missense_Mutation p.R53Q 0.20 deleterious(0.04) benign(0.123) TCGA-CM-5860-01 2 86308820 86308823 AGAA - POLR1A Frame_Shift_Del p.F275* 0.11 TCGA-CM-5860-01 3 108572535 108572535 C T TRAT1 Silent p.P124P 0.23 TCGA-CM-5860-01 3 13538274 13538274 C A HDAC11 Silent p.P97P 0.22 TCGA-CM-5860-01 3 1424799 1424799 G T CNTN6 Silent p.V780V 0.38 TCGA-CM-5860-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-CM-5860-01 3 193311166 193311166 G T OPA1 5'UTR 0.38 TCGA-CM-5860-01 3 36887857 36887857 G A TRANK1 Silent p.I1647I 0.09 TCGA-CM-5860-01 3 38595795 38595795 G A SCN5A Silent p.F1596F 0.21 TCGA-CM-5860-01 3 49947679 49947679 G A MON1A Missense_Mutation p.R515C 0.24 deleterious(0) possibly_damaging(0.731) TCGA-CM-5860-01 3 86114850 86114850 C T CADM2 Silent p.L389L 0.05 TCGA-CM-5860-01 3 97984014 97984014 G A OR5H6 Missense_Mutation p.V296I 0.35 tolerated(0.97) benign(0.044) TCGA-CM-5860-01 4 123277083 123277083 C G KIAA1109 Missense_Mutation p.P4813R 0.25 probably_damaging(0.999) TCGA-CM-5860-01 4 155411002 155411002 G A DCHS2 Silent p.R502R 0.50 TCGA-CM-5860-01 4 176622782 176622782 C A GPM6A Silent p.L58L 0.16 TCGA-CM-5860-01 4 177245370 177245373 TTTC - SPCS3 Frame_Shift_Del p.L87Ifs*13 0.40 TCGA-CM-5860-01 4 6086661 6086661 C T JAKMIP1 Missense_Mutation p.R289Q 0.19 deleterious(0) probably_damaging(0.956) TCGA-CM-5860-01 4 73012746 73012746 G A NPFFR2 Silent p.A262A 0.26 TCGA-CM-5860-01 4 92519970 92519970 G A CCSER1 Missense_Mutation p.R822Q 0.22 tolerated_low_confidence(0.37) benign(0.002) TCGA-CM-5860-01 5 112178000 112178000 C T APC Nonsense_Mutation p.R2237* 0.31 TCGA-CM-5860-01 5 132534951 132534951 C T FSTL4 Missense_Mutation p.G789R 0.39 deleterious(0) possibly_damaging(0.602) TCGA-CM-5860-01 5 140202911 140202911 C T PCDHA5 Silent p.Y517Y 0.30 TCGA-CM-5860-01 5 140476606 140476606 C T PCDHB2 Silent p.T744T 0.25 TCGA-CM-5860-01 5 64966114 64966114 G A SGTB Missense_Mutation p.R292W 0.34 deleterious(0) probably_damaging(0.983) TCGA-CM-5860-01 6 146207611 146207611 G T SHPRH 3'UTR 0.05 TCGA-CM-5860-01 6 152560703 152560703 G T SYNE1 Missense_Mutation p.H6678N 0.12 benign(0.281) TCGA-CM-5860-01 6 7571658 7571658 G A DSP Missense_Mutation p.D582N 0.45 probably_damaging(0.996) TCGA-CM-5860-01 7 100198501 100198501 G T FBXO24 Silent p.G612G 0.16 TCGA-CM-5860-01 7 100243871 100243871 C T ACTL6B Splice_Site p.X400_splice 0.46 TCGA-CM-5860-01 7 100421439 100421439 G A EPHB4 Missense_Mutation p.R80W 0.18 deleterious(0) probably_damaging(0.997) TCGA-CM-5860-01 7 107336394 107336394 C T SLC26A4 Missense_Mutation p.T485M 0.24 deleterious(0) probably_damaging(0.973) TCGA-CM-5860-01 7 150754905 150754905 C A CDK5 Missense_Mutation p.G11W 0.69 deleterious(0) probably_damaging(1) TCGA-CM-5860-01 7 42065981 42065981 C T GLI3 Silent p.A353A 0.47 TCGA-CM-5860-01 7 87825828 87825828 A T ADAM22 3'UTR 0.39 TCGA-CM-5860-01 7 98592470 98592470 G A TRRAP Silent p.T3422T 0.54 TCGA-CM-5860-01 7 99103713 99103713 G T ZKSCAN5 Missense_Mutation p.A16S 0.12 tolerated(0.23) benign(0.015) TCGA-CM-5860-01 8 113657414 113657414 G T CSMD3 Silent p.I1078I 0.58 TCGA-CM-5860-01 8 116427211 116427211 C A TRPS1 Missense_Mutation p.Q975H 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CM-5860-01 8 33356871 33356871 C T MAK16 3'UTR 0.15 TCGA-CM-5860-01 8 77766530 77766530 T G ZFHX4 Missense_Mutation p.L2458R 0.60 possibly_damaging(0.556) TCGA-CM-5860-01 8 87683190 87683190 C T CNGB3 Missense_Mutation p.E159K 0.12 tolerated(0.09) probably_damaging(0.93) TCGA-CM-5860-01 8 89198828 89198828 C T MMP16 Splice_Site p.X94_splice 0.60 TCGA-CM-5860-01 9 35808554 35808554 C T NPR2 Nonsense_Mutation p.R921* 0.67 TCGA-CM-5860-01 9 37956053 37956053 T C SHB Splice_Site p.X352_splice 0.54 TCGA-CM-5860-01 9 85950519 85950519 C G FRMD3 Missense_Mutation p.E170Q 0.06 tolerated(0.11) benign(0.081) TCGA-CM-5860-01 X 107909786 107909786 A T COL4A5 Missense_Mutation p.D1172V 0.07 unknown(0) TCGA-CM-5860-01 X 118724014 118724015 TG - NKRF Frame_Shift_Del p.T473Sfs*4 0.22 TCGA-CM-5860-01 X 130218323 130218323 G A ARHGAP36 Silent p.P230P 0.78 TCGA-CM-5860-01 X 132439867 132439867 G A GPC4 Missense_Mutation p.A363V 0.24 tolerated(0.16) benign(0.176) TCGA-CM-5860-01 X 140926110 140926110 G T MAGEC3 Silent p.L3L 0.81 TCGA-CM-5860-01 X 34150286 34150286 C T FAM47A Missense_Mutation p.R37H 0.22 tolerated(0.28) probably_damaging(0.967) TCGA-CM-5861-01 10 101491813 101491813 G A COX15 5'UTR 0.31 TCGA-CM-5861-01 10 102684424 102684424 C - FAM178A Frame_Shift_Del p.P557Lfs*37 0.10 TCGA-CM-5861-01 10 102750222 102750222 T C C10orf2 Missense_Mutation p.V505A 0.21 tolerated(0.12) benign(0.241) TCGA-CM-5861-01 10 102792169 102792169 G A SFXN3 5'UTR 0.35 TCGA-CM-5861-01 10 104160229 104160229 G A NFKB2 Silent p.L593L 0.39 TCGA-CM-5861-01 10 104160936 104160936 G T NFKB2 Splice_Site p.X691_splice 0.19 TCGA-CM-5861-01 10 104620277 104620277 T C C10orf32 Missense_Mutation p.I76T 0.27 tolerated(0.1) benign(0.015) TCGA-CM-5861-01 10 105361689 105361689 C - SH3PXD2A Frame_Shift_Del p.V1068Cfs*22 0.26 TCGA-CM-5861-01 10 105762265 105762265 C T SLK Silent p.D443D 0.17 TCGA-CM-5861-01 10 105891914 105891914 T C WDR96 Missense_Mutation p.Q1546R 0.14 tolerated(0.15) benign(0.16) TCGA-CM-5861-01 10 108923908 108923908 C T SORCS1 Missense_Mutation p.R126Q 0.45 tolerated(0.32) benign(0.127) TCGA-CM-5861-01 10 114925333 114925333 C A TCF7L2 Missense_Mutation p.R471S 0.29 tolerated(0.05) possibly_damaging(0.613) TCGA-CM-5861-01 10 115312807 115312807 T - HABP2 5'UTR 0.27 TCGA-CM-5861-01 10 115805933 115805933 T C ADRB1 3'UTR 0.30 TCGA-CM-5861-01 10 11912847 11912847 A C PROSER2 3'UTR 0.46 TCGA-CM-5861-01 10 119307667 119307667 C T EMX2 Missense_Mutation p.T228M 0.36 deleterious(0.01) benign(0.41) TCGA-CM-5861-01 10 119307778 119307778 T C EMX2 3'UTR 0.42 TCGA-CM-5861-01 10 120793734 120793734 C T NANOS1 3'UTR 0.24 TCGA-CM-5861-01 10 121582664 121582664 T C INPP5F Missense_Mutation p.F705S 0.12 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 10 123324983 123324983 A G FGFR2 Silent p.S115S 0.14 TCGA-CM-5861-01 10 124248513 124248513 C T HTRA1 Missense_Mutation p.R190C 0.20 tolerated(0.18) possibly_damaging(0.821) TCGA-CM-5861-01 10 124249025 124249025 C T HTRA1 Silent p.H220H 0.38 TCGA-CM-5861-01 10 126714752 126714752 G T CTBP2 Missense_Mutation p.P526Q 0.34 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-CM-5861-01 10 126716332 126716332 A - CTBP2 5'UTR 0.31 TCGA-CM-5861-01 10 128974469 128974469 A G FAM196A Missense_Mutation p.L64P 0.42 deleterious(0.04) benign(0.082) TCGA-CM-5861-01 10 129690828 129690828 T C CLRN3 Missense_Mutation p.K74R 0.40 tolerated(0.51) benign(0.001) TCGA-CM-5861-01 10 129906355 129906355 G A MKI67 Missense_Mutation p.P1250L 0.07 tolerated(0.23) benign(0.094) TCGA-CM-5861-01 10 133058601 133058601 C T TCERG1L Silent p.P259P 0.27 TCGA-CM-5861-01 10 13380781 13380781 G T SEPHS1 Missense_Mutation p.P74H 0.09 deleterious(0) probably_damaging(0.984) TCGA-CM-5861-01 10 134218148 134218148 A G PWWP2B Silent p.L48L 0.33 TCGA-CM-5861-01 10 135025301 135025301 A C KNDC1 Missense_Mutation p.E1392A 0.35 deleterious(0) benign(0.082) TCGA-CM-5861-01 10 135083017 135083017 T G ADAM8 Missense_Mutation p.Q627P 0.27 tolerated(0.14) benign(0.007) TCGA-CM-5861-01 10 14939186 14939186 C T SUV39H2 Silent p.N173N 0.44 TCGA-CM-5861-01 10 18905128 18905128 C T NSUN6 Missense_Mutation p.V136M 0.45 tolerated(0.27) benign(0.017) TCGA-CM-5861-01 10 22862253 22862253 T C PIP4K2A Missense_Mutation p.K209R 0.40 deleterious(0.03) probably_damaging(0.961) TCGA-CM-5861-01 10 24884661 24884661 G A ARHGAP21 Missense_Mutation p.P1233S 0.37 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 10 25241525 25241525 G A PRTFDC1 5'UTR 0.28 TCGA-CM-5861-01 10 26355933 26355933 A G MYO3A Missense_Mutation p.N328S 0.19 tolerated(0.33) benign(0.007) TCGA-CM-5861-01 10 27444535 27444535 A T MASTL Silent p.A60A 0.39 TCGA-CM-5861-01 10 29747067 29747070 TGAT - SVIL 3'UTR 0.46 TCGA-CM-5861-01 10 29821632 29821632 G - SVIL Frame_Shift_Del p.P555Lfs*6 0.22 TCGA-CM-5861-01 10 30317562 30317562 G - KIAA1462 Frame_Shift_Del p.D507Mfs*23 0.37 TCGA-CM-5861-01 10 3180509 3180509 C T PITRM1 Missense_Mutation p.G981S 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-CM-5861-01 10 34671516 34671516 A G PARD3 Missense_Mutation p.Y451H 0.12 deleterious(0.03) possibly_damaging(0.631) TCGA-CM-5861-01 10 38406929 38406929 T C ZNF37A Missense_Mutation p.S284P 0.15 deleterious(0.04) probably_damaging(0.979) TCGA-CM-5861-01 10 43601907 43601907 G A RET Silent p.T317T 0.31 TCGA-CM-5861-01 10 43613901 43613901 A G RET Missense_Mutation p.K789E 0.31 deleterious(0) benign(0.425) TCGA-CM-5861-01 10 49395263 49395264 AG - FRMPD2 Frame_Shift_Del p.S746Wfs*14 0.42 TCGA-CM-5861-01 10 49812806 49812807 - C ARHGAP22 Splice_Site p.X12_splice 0.30 TCGA-CM-5861-01 10 49983820 49983821 - CA WDFY4 Frame_Shift_Ins p.R948Tfs*54 0.27 TCGA-CM-5861-01 10 50531636 50531636 G - C10orf71 Frame_Shift_Del p.C351Afs*48 0.23 TCGA-CM-5861-01 10 50819552 50819552 G A SLC18A3 Missense_Mutation p.A256T 0.43 deleterious(0.02) probably_damaging(0.912) TCGA-CM-5861-01 10 50820671 50820674 TCTG - SLC18A3 3'UTR 0.18 TCGA-CM-5861-01 10 50833587 50833587 A G CHAT Missense_Mutation p.Y274C 0.17 deleterious(0.01) possibly_damaging(0.665) TCGA-CM-5861-01 10 51585145 51585145 A T NCOA4 Missense_Mutation p.E431V 0.23 deleterious(0.03) benign(0.03) TCGA-CM-5861-01 10 54531353 54531353 C T MBL2 Missense_Mutation p.V15M 0.09 tolerated(0.25) benign(0.318) TCGA-CM-5861-01 10 60380632 60380632 G T BICC1 Missense_Mutation p.G70C 0.33 tolerated(0.08) possibly_damaging(0.832) TCGA-CM-5861-01 10 64022433 64022433 A T RTKN2 Missense_Mutation p.S70T 0.38 tolerated(0.61) benign(0.004) TCGA-CM-5861-01 10 64159513 64159513 A - ZNF365 Intron 0.27 TCGA-CM-5861-01 10 64415167 64415167 C G ZNF365 Intron 0.24 TCGA-CM-5861-01 10 64416176 64416176 C T ZNF365 Silent p.L384L 0.37 TCGA-CM-5861-01 10 64573839 64573839 C T EGR2 Missense_Mutation p.A187T 0.34 tolerated(0.08) benign(0.05) TCGA-CM-5861-01 10 70100988 70100988 G A HNRNPH3 Missense_Mutation p.A233T 0.37 tolerated(0.13) possibly_damaging(0.853) TCGA-CM-5861-01 10 72061170 72061170 C T LRRC20 Silent p.P165P 0.43 TCGA-CM-5861-01 10 74326493 74326493 T C MICU1 Missense_Mutation p.Y20C 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.642) TCGA-CM-5861-01 10 77159665 77159665 G A ZNF503 Silent p.G261G 0.34 TCGA-CM-5861-01 10 77167276 77167276 C A RP11-399K21.14 5'Flank 0.25 TCGA-CM-5861-01 10 8097740 8097740 A G GATA3 Missense_Mutation p.Y41C 0.29 deleterious(0) probably_damaging(0.965) TCGA-CM-5861-01 10 81839044 81839044 C T TMEM254 Intron 0.53 TCGA-CM-5861-01 10 858938 858939 - C LARP4B Frame_Shift_Ins p.R716Pfs*60 0.29 TCGA-CM-5861-01 10 85974213 85974213 G A CDHR1 Missense_Mutation p.A806T 0.33 tolerated_low_confidence(0.69) benign(0.001) TCGA-CM-5861-01 10 86273216 86273216 A G CCSER2 Missense_Mutation p.T808A 0.29 deleterious(0.01) benign(0.002) TCGA-CM-5861-01 10 871227 871227 G A LARP4B Missense_Mutation p.A421V 0.33 deleterious(0.01) benign(0.024) TCGA-CM-5861-01 10 87362349 87362349 T A GRID1 Missense_Mutation p.E904V 0.08 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-CM-5861-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.29 TCGA-CM-5861-01 10 95719116 95719116 C T PIPSL RNA 0.45 TCGA-CM-5861-01 10 96997816 96997816 A G PDLIM1 Missense_Mutation p.C286R 0.40 deleterious(0) probably_damaging(0.991) TCGA-CM-5861-01 10 99190184 99190184 C T PGAM1 Missense_Mutation p.A63V 0.31 tolerated(0.05) benign(0.12) TCGA-CM-5861-01 11 100061876 100061876 C T CNTN5 Silent p.D533D 0.32 TCGA-CM-5861-01 11 102221039 102221039 T C BIRC2 Missense_Mutation p.S152P 0.21 deleterious(0.03) benign(0.013) TCGA-CM-5861-01 11 102650395 102650395 T - MMP10 Frame_Shift_Del p.I63Sfs*12 0.26 TCGA-CM-5861-01 11 1031001 1031001 G A MUC6 Silent p.G210G 0.33 TCGA-CM-5861-01 11 104915194 104915194 G A CARD16 Nonsense_Mutation p.Q67* 0.35 TCGA-CM-5861-01 11 108186552 108186552 T A ATM Missense_Mutation p.D2003E 0.12 tolerated(0.34) benign(0.042) TCGA-CM-5861-01 11 10875892 10875892 T G ZBED5 Missense_Mutation p.S201R 0.29 deleterious(0.01) probably_damaging(0.933) TCGA-CM-5861-01 11 109294715 109294715 G A C11orf87 Missense_Mutation p.G119D 0.15 deleterious(0) possibly_damaging(0.893) TCGA-CM-5861-01 11 110582936 110582936 G - ARHGAP20 Frame_Shift_Del p.Q7Sfs*5 0.28 TCGA-CM-5861-01 11 111953259 111953259 C T C11orf57 Missense_Mutation p.R149C 0.32 deleterious(0.01) possibly_damaging(0.821) TCGA-CM-5861-01 11 113848541 113848541 A G HTR3A Missense_Mutation p.D45G 0.27 tolerated(0.1) benign(0.381) TCGA-CM-5861-01 11 116691497 116691497 C T APOA4 3'UTR 0.38 TCGA-CM-5861-01 11 118261496 118261496 A G UBE4A Missense_Mutation p.S972G 0.45 tolerated(0.39) benign(0.002) TCGA-CM-5861-01 11 118516242 118516242 C T PHLDB1 Missense_Mutation p.A1097V 0.32 tolerated(0.09) benign(0.002) TCGA-CM-5861-01 11 118773098 118773098 G - BCL9L Frame_Shift_Del p.Q452Sfs*11 0.41 TCGA-CM-5861-01 11 118888732 118888732 G T RPS25 Missense_Mutation p.A12D 0.24 tolerated(0.06) benign(0.016) TCGA-CM-5861-01 11 119058335 119058335 C - PDZD3 Frame_Shift_Del p.A198Pfs*6 0.26 TCGA-CM-5861-01 11 120957930 120957930 G T TBCEL 3'UTR 0.21 TCGA-CM-5861-01 11 12263787 12263787 C T MICAL2 Silent p.H788H 0.50 TCGA-CM-5861-01 11 123624904 123624904 G A OR6X1 Missense_Mutation p.T108I 0.35 deleterious(0.05) benign(0.293) TCGA-CM-5861-01 11 123777207 123777207 T G OR8D4 Silent p.L23L 0.14 TCGA-CM-5861-01 11 125499134 125499134 C - CHEK1 Frame_Shift_Del p.D99Efs*2 0.26 TCGA-CM-5861-01 11 126284001 126284001 C T ST3GAL4 3'UTR 0.33 TCGA-CM-5861-01 11 128709617 128709617 C T KCNJ1 Silent p.T193T 0.43 TCGA-CM-5861-01 11 129814718 129814718 T G PRDM10 Missense_Mutation p.E237A 0.33 deleterious(0.01) benign(0.024) TCGA-CM-5861-01 11 132205100 132205100 G A NTM 3'UTR 0.31 TCGA-CM-5861-01 11 134037925 134037925 A G NCAPD3 Missense_Mutation p.V1180A 0.10 tolerated(0.08) benign(0.057) TCGA-CM-5861-01 11 134214944 134214944 G A GLB1L2 Missense_Mutation p.A124T 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-CM-5861-01 11 1585143 1585143 C T DUSP8 Missense_Mutation p.S103N 0.27 tolerated(0.19) possibly_damaging(0.688) TCGA-CM-5861-01 11 17190544 17190544 T C PIK3C2A Missense_Mutation p.T249A 0.11 tolerated_low_confidence(0.47) benign(0.001) TCGA-CM-5861-01 11 1782613 1782613 C T CTSD Missense_Mutation p.V52I 0.33 tolerated(0.81) benign(0.001) TCGA-CM-5861-01 11 1888096 1888096 G A LSP1 Missense_Mutation p.G131D 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-CM-5861-01 11 19253779 19253779 A G E2F8 Splice_Site p.X356_splice 0.41 TCGA-CM-5861-01 11 20127272 20127272 C T NAV2 Silent p.I2339I 0.39 TCGA-CM-5861-01 11 20178177 20178177 G - DBX1 Frame_Shift_Del p.G245Efs*5 0.32 TCGA-CM-5861-01 11 20673975 20673975 G A SLC6A5 Missense_Mutation p.M737I 0.34 tolerated(0.57) benign(0.055) TCGA-CM-5861-01 11 22296291 22296291 C T ANO5 Silent p.C804C 0.39 TCGA-CM-5861-01 11 22399154 22399154 T C SLC17A6 Silent p.G539G 0.33 TCGA-CM-5861-01 11 22844519 22844519 T - SVIP 3'UTR 0.30 TCGA-CM-5861-01 11 26732893 26732893 C T SLC5A12 Missense_Mutation p.G140R 0.30 deleterious(0) probably_damaging(0.949) TCGA-CM-5861-01 11 30033579 30033579 C T KCNA4 Missense_Mutation p.R216H 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-CM-5861-01 11 30034453 30034453 G T KCNA4 5'UTR 0.34 TCGA-CM-5861-01 11 32461019 32461019 A - WT1 5'Flank 0.28 TCGA-CM-5861-01 11 33689544 33689544 G A KIAA1549L Silent p.A1798A 0.41 TCGA-CM-5861-01 11 33880906 33880906 A G LMO2 Missense_Mutation p.I227T 0.22 deleterious_low_confidence(0.05) benign(0.054) TCGA-CM-5861-01 11 34162057 34162057 G A NAT10 Missense_Mutation p.A844T 0.26 tolerated(1) benign(0.002) TCGA-CM-5861-01 11 3697453 3697453 G C NUP98 Missense_Mutation p.A1780G 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-CM-5861-01 11 40136749 40136749 A G LRRC4C Missense_Mutation p.V365A 0.33 tolerated(0.07) benign(0.343) TCGA-CM-5861-01 11 4091299 4091299 T C STIM1 Silent p.S219S 0.34 TCGA-CM-5861-01 11 4103526 4103526 A G STIM1 Missense_Mutation p.Y361C 0.18 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 11 43419010 43419010 C G TTC17 Missense_Mutation p.T296S 0.36 deleterious(0.02) probably_damaging(0.991) TCGA-CM-5861-01 11 43436297 43436297 T G TTC17 Missense_Mutation p.L741R 0.32 deleterious(0) possibly_damaging(0.828) TCGA-CM-5861-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.54 TCGA-CM-5861-01 11 46515257 46515257 G A AMBRA1 Missense_Mutation p.R718C 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CM-5861-01 11 47199973 47199973 A G PACSIN3 Missense_Mutation p.V368A 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-CM-5861-01 11 47494746 47494746 G A CELF1 Silent p.P435P 0.42 TCGA-CM-5861-01 11 48152202 48152202 T C PTPRJ Missense_Mutation p.F517L 0.43 deleterious(0.02) probably_damaging(0.947) TCGA-CM-5861-01 11 49204780 49204780 G A FOLH1 Missense_Mutation p.R281C 0.07 tolerated(0.07) benign(0.179) TCGA-CM-5861-01 11 55594829 55594829 G A OR5L2 Missense_Mutation p.M45I 0.34 deleterious(0.05) benign(0.009) TCGA-CM-5861-01 11 55999731 55999731 T C OR5T2 Missense_Mutation p.M311V 0.36 deleterious(0.03) benign(0.26) TCGA-CM-5861-01 11 56113842 56113842 T G OR8K1 Missense_Mutation p.F110V 0.10 deleterious_low_confidence(0.01) benign(0.301) TCGA-CM-5861-01 11 56237701 56237701 A G OR5M3 Silent p.T91T 0.37 TCGA-CM-5861-01 11 56258665 56258665 A - OR5M8 Frame_Shift_Del p.F61Sfs*2 0.12 TCGA-CM-5861-01 11 56510306 56510307 AT - OR9G4 Frame_Shift_Del p.T328T 0.09 TCGA-CM-5861-01 11 5653768 5653768 G A TRIM34 Silent p.Q69Q 0.30 TCGA-CM-5861-01 11 5686181 5686181 C T TRIM5 Missense_Mutation p.C447Y 0.32 deleterious(0.01) possibly_damaging(0.77) TCGA-CM-5861-01 11 57440531 57440531 C T ZDHHC5 5'UTR 0.33 TCGA-CM-5861-01 11 58979306 58979306 T C MPEG1 Missense_Mutation p.N345D 0.39 deleterious(0) probably_damaging(0.983) TCGA-CM-5861-01 11 5969197 5969197 C T OR56A3 Silent p.G207G 0.31 TCGA-CM-5861-01 11 61058328 61058328 G A VWCE Nonsense_Mutation p.R123* 0.18 TCGA-CM-5861-01 11 61541493 61541493 C T MYRF Silent p.G390G 0.40 TCGA-CM-5861-01 11 61543586 61543586 G A MYRF Missense_Mutation p.R457Q 0.33 deleterious(0) probably_damaging(0.984) TCGA-CM-5861-01 11 619122 619122 G A CDHR5 Silent p.S479S 0.42 TCGA-CM-5861-01 11 62295576 62295576 G A AHNAK Missense_Mutation p.L2105F 0.09 benign(0.002) TCGA-CM-5861-01 11 62416125 62416125 G A INTS5 Missense_Mutation p.A476V 0.38 tolerated(0.16) possibly_damaging(0.511) TCGA-CM-5861-01 11 62996743 62996743 G T SLC22A25 Missense_Mutation p.P128T 0.35 tolerated(0.46) benign(0.002) TCGA-CM-5861-01 11 63673558 63673605 AGAAATCTGTCTTTCAGGTTTGCCAGAAGGTAGGCGTTGAGCCCGCTG TAGAAATCTGTCTTTCAGGTTTGCCAGAAGGTAGGCGTTGAGCCCGC MARK2 Splice_Site p.X645_splice 0.14 TCGA-CM-5861-01 11 63886078 63886079 TC - FLRT1 3'UTR 0.32 TCGA-CM-5861-01 11 6416731 6416731 A G APBB1 3'UTR 0.12 TCGA-CM-5861-01 11 64329603 64329603 G A SLC22A11 Missense_Mutation p.G209S 0.30 tolerated(0.07) possibly_damaging(0.775) TCGA-CM-5861-01 11 64681891 64681891 G A ATG2A Missense_Mutation p.P85S 0.46 deleterious(0) possibly_damaging(0.842) TCGA-CM-5861-01 11 64694297 64694297 G A PPP2R5B Missense_Mutation p.A105T 0.37 tolerated(0.13) probably_damaging(0.943) TCGA-CM-5861-01 11 6477788 6477788 A G TRIM3 Missense_Mutation p.Y390H 0.18 deleterious(0) probably_damaging(0.977) TCGA-CM-5861-01 11 64800004 64800004 C - SNX15 Frame_Shift_Del p.R81Gfs*12 0.41 TCGA-CM-5861-01 11 64812208 64812208 C T SAC3D1 3'UTR 0.53 TCGA-CM-5861-01 11 65029695 65029695 C A POLA2 5'UTR 0.34 TCGA-CM-5861-01 11 65144301 65144301 C T SLC25A45 Missense_Mutation p.G196S 0.35 tolerated(0.07) benign(0.126) TCGA-CM-5861-01 11 65306856 65306856 C T LTBP3 Missense_Mutation p.A1235T 0.39 tolerated(0.59) benign(0.037) TCGA-CM-5861-01 11 65362958 65362958 G T KCNK7 Missense_Mutation p.L96M 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 11 65366954 65366954 G A MAP3K11 Missense_Mutation p.P706L 0.47 tolerated_low_confidence(0.18) benign(0.002) TCGA-CM-5861-01 11 65632506 65632506 C T MUS81 Missense_Mutation p.R431C 0.34 tolerated(0.22) benign(0.005) TCGA-CM-5861-01 11 65770735 65770735 A C BANF1 Missense_Mutation p.Q5P 0.34 tolerated(0.07) benign(0.119) TCGA-CM-5861-01 11 66084107 66084107 C T CD248 Missense_Mutation p.C131Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 11 66249861 66249861 A G DPP3 Missense_Mutation p.S64G 0.59 tolerated(0.19) benign(0) TCGA-CM-5861-01 11 66331417 66331417 G A CTSF Missense_Mutation p.A481V 0.33 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 11 6638044 6638044 C T TPP1 Missense_Mutation p.R245H 0.35 tolerated(0.38) benign(0.003) TCGA-CM-5861-01 11 66458829 66458829 C T SPTBN2 Missense_Mutation p.D1831N 0.36 deleterious(0.02) probably_damaging(0.988) TCGA-CM-5861-01 11 66605857 66605857 A G C11orf80 Missense_Mutation p.K563R 0.25 tolerated(0.17) possibly_damaging(0.801) TCGA-CM-5861-01 11 66743718 66743718 C A C11orf86 Missense_Mutation p.P115Q 0.33 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-CM-5861-01 11 67225972 67225972 G A CABP4 Missense_Mutation p.G261D 0.35 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 11 67379956 67379956 G A NDUFV1 3'UTR 0.34 TCGA-CM-5861-01 11 67770589 67770589 A G UNC93B1 Missense_Mutation p.Y99H 0.34 deleterious(0) probably_damaging(0.973) TCGA-CM-5861-01 11 67926244 67926244 T G SUV420H1 Missense_Mutation p.R523S 0.29 tolerated(0.19) benign(0.103) TCGA-CM-5861-01 11 6806618 6806618 T C OR2AG1 Missense_Mutation p.F117S 0.36 tolerated(0.06) possibly_damaging(0.846) TCGA-CM-5861-01 11 69063304 69063304 C T MYEOV Silent p.D129D 0.37 TCGA-CM-5861-01 11 69482234 69482234 A G ORAOV1 3'UTR 0.41 TCGA-CM-5861-01 11 7111368 7111368 C G RBMXL2 Silent p.G339G 0.34 TCGA-CM-5861-01 11 71671827 71671827 C A RNF121 Missense_Mutation p.R45S 0.09 deleterious(0.04) benign(0.049) TCGA-CM-5861-01 11 71718341 71718342 - G NUMA1 Frame_Shift_Ins p.L1786Pfs*18 0.27 TCGA-CM-5861-01 11 71850446 71850446 A G FOLR3 Missense_Mutation p.D180G 0.30 deleterious(0) probably_damaging(0.945) TCGA-CM-5861-01 11 722799 722799 C T EPS8L2 Silent p.I445I 0.45 TCGA-CM-5861-01 11 7655751 7655751 C T PPFIBP2 Silent p.L388L 0.33 TCGA-CM-5861-01 11 76912560 76912560 C A MYO7A Silent p.G1640G 0.40 TCGA-CM-5861-01 11 77412270 77412270 G T RSF1 Silent p.T668T 0.35 TCGA-CM-5861-01 11 77413221 77413221 G A RSF1 Silent p.I351I 0.26 TCGA-CM-5861-01 11 78423549 78423549 T A TENM4 Missense_Mutation p.E1344D 0.33 tolerated(0.29) benign(0.003) TCGA-CM-5861-01 11 8457638 8457638 A G STK33 Silent p.F332F 0.34 TCGA-CM-5861-01 11 85407426 85407426 A G SYTL2 Missense_Mutation p.I1158T 0.33 deleterious(0) probably_damaging(0.987) TCGA-CM-5861-01 11 86111769 86111769 C A CCDC81 Silent p.A269A 0.33 TCGA-CM-5861-01 11 9068988 9068988 G A SCUBE2 Silent p.L639L 0.19 TCGA-CM-5861-01 11 92600174 92600174 A G FAT3 Missense_Mutation p.T3976A 0.21 benign(0.027) TCGA-CM-5861-01 11 93462669 93462669 A G KIAA1731 Missense_Mutation p.I2458V 0.24 tolerated(0.78) benign(0.002) TCGA-CM-5861-01 11 94200977 94200977 A T MRE11A Splice_Site p.X366_splice 0.30 TCGA-CM-5861-01 11 95555759 95555759 G A CEP57 Intron 0.33 TCGA-CM-5861-01 12 100452912 100452912 G A UHRF1BP1L Missense_Mutation p.P715S 0.24 tolerated(0.08) probably_damaging(1) TCGA-CM-5861-01 12 101759295 101759295 G A UTP20 Missense_Mutation p.R2006Q 0.37 deleterious(0.04) benign(0.185) TCGA-CM-5861-01 12 101767470 101767470 C T UTP20 Silent p.S2352S 0.12 TCGA-CM-5861-01 12 10213744 10213744 T C CLEC9A Missense_Mutation p.I64T 0.32 tolerated(0.3) benign(0.01) TCGA-CM-5861-01 12 103352469 103352469 G A ASCL1 Silent p.A149A 0.47 TCGA-CM-5861-01 12 105150943 105150943 C T CHST11 Missense_Mutation p.R141W 0.20 deleterious(0) possibly_damaging(0.849) TCGA-CM-5861-01 12 105151347 105151347 C T CHST11 Silent p.L275L 0.36 TCGA-CM-5861-01 12 106464662 106464662 A G NUAK1 Missense_Mutation p.V241A 0.29 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 12 108604047 108604047 A G WSCD2 Missense_Mutation p.Y216C 0.31 deleterious(0.01) possibly_damaging(0.681) TCGA-CM-5861-01 12 108634136 108634136 G A WSCD2 Missense_Mutation p.R387Q 0.28 deleterious(0.01) benign(0.232) TCGA-CM-5861-01 12 108957929 108957929 C T ISCU Intron 0.41 TCGA-CM-5861-01 12 108985697 108985697 C T TMEM119 Missense_Mutation p.D155N 0.39 deleterious(0) probably_damaging(0.983) TCGA-CM-5861-01 12 109311852 109311852 T C SVOP Silent p.G374G 0.36 TCGA-CM-5861-01 12 109971310 109971310 G A UBE3B Missense_Mutation p.A988T 0.41 deleterious(0.03) possibly_damaging(0.846) TCGA-CM-5861-01 12 111345220 111345220 C T CCDC63 Silent p.R544R 0.42 TCGA-CM-5861-01 12 112590709 112590710 - T TRAFD1 3'UTR 0.30 TCGA-CM-5861-01 12 112681175 112681175 A G HECTD4 Missense_Mutation p.V1501A 0.10 possibly_damaging(0.84) TCGA-CM-5861-01 12 113633553 113633553 C T IQCD Missense_Mutation p.A291T 0.36 tolerated(0.39) possibly_damaging(0.472) TCGA-CM-5861-01 12 117768528 117768528 G A NOS1 Missense_Mutation p.T116I 0.21 tolerated_low_confidence(0.29) benign(0.127) TCGA-CM-5861-01 12 120784098 120784098 G - MSI1 Frame_Shift_Del p.P296Lfs*57 0.16 TCGA-CM-5861-01 12 120884151 120884151 T C TRIAP1 Missense_Mutation p.T9A 0.38 deleterious(0.01) possibly_damaging(0.874) TCGA-CM-5861-01 12 122252160 122252160 C T SETD1B Missense_Mutation p.P680L 0.33 unknown(0) TCGA-CM-5861-01 12 122716783 122716783 T C VPS33A 3'UTR 0.40 TCGA-CM-5861-01 12 122839052 122839053 - T CLIP1 Frame_Shift_Ins p.A419Sfs*3 0.29 TCGA-CM-5861-01 12 123072386 123072386 G A KNTC1 Missense_Mutation p.V1287M 0.09 tolerated(0.24) benign(0.002) TCGA-CM-5861-01 12 123075188 123075188 C T KNTC1 Missense_Mutation p.A1345V 0.31 deleterious(0) probably_damaging(0.98) TCGA-CM-5861-01 12 123261945 123261945 G A CCDC62 Intron 0.35 TCGA-CM-5861-01 12 123464911 123464911 C T ARL6IP4 5'UTR 0.29 TCGA-CM-5861-01 12 123466293 123466295 GAA - ARL6IP4 In_Frame_Del p.K240del 0.33 TCGA-CM-5861-01 12 123875243 123875243 C T SETD8 Missense_Mutation p.R67C 0.33 deleterious_low_confidence(0.03) benign(0.133) TCGA-CM-5861-01 12 12815126 12815126 A G GPR19 Missense_Mutation p.V86A 0.38 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 12 133196076 133196076 G A P2RX2 Silent p.E75E 0.39 TCGA-CM-5861-01 12 133198322 133198322 A G P2RX2 Missense_Mutation p.T420A 0.38 tolerated(0.13) benign(0.429) TCGA-CM-5861-01 12 133202780 133202780 C T POLE Missense_Mutation p.V2152M 0.36 deleterious(0.02) benign(0.151) TCGA-CM-5861-01 12 14930282 14930282 A G H2AFJ 3'UTR 0.27 TCGA-CM-5861-01 12 15035042 15035042 A - MGP 3'UTR 0.13 TCGA-CM-5861-01 12 16135367 16135367 G A DERA Missense_Mutation p.A212T 0.36 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 12 19496356 19496356 A G PLEKHA5 Missense_Mutation p.T884A 0.39 tolerated(0.35) benign(0.002) TCGA-CM-5861-01 12 19511347 19511347 G T PLEKHA5 Missense_Mutation p.R1108S 0.40 tolerated(0.08) benign(0.271) TCGA-CM-5861-01 12 20522723 20522723 G - PDE3A Frame_Shift_Del p.E171Kfs*36 0.40 TCGA-CM-5861-01 12 21428235 21428235 A - SLCO1A2 Intron 0.14 TCGA-CM-5861-01 12 21919555 21919555 G A KCNJ8 Missense_Mutation p.S126F 0.56 deleterious(0) probably_damaging(0.94) TCGA-CM-5861-01 12 22666279 22666279 C - C2CD5 Frame_Shift_Del p.F331Lfs*5 0.24 TCGA-CM-5861-01 12 24970931 24970931 C A BCAT1 3'UTR 0.30 TCGA-CM-5861-01 12 25149207 25149207 T C C12orf77 Missense_Mutation p.R24G 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-CM-5861-01 12 25299959 25299960 CA - CASC1 Frame_Shift_Del p.W222Gfs*13 0.10 TCGA-CM-5861-01 12 27863834 27863834 C T MRPS35 Missense_Mutation p.R20C 0.29 tolerated_low_confidence(0.08) possibly_damaging(0.732) TCGA-CM-5861-01 12 2800087 2800087 G T CACNA1C Missense_Mutation p.G2095W 0.34 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CM-5861-01 12 29474787 29474787 A G FAR2 Missense_Mutation p.N396S 0.36 tolerated(0.92) benign(0.024) TCGA-CM-5861-01 12 29494089 29494089 T C ERGIC2 Silent p.%3D 0.29 TCGA-CM-5861-01 12 3049633 3049633 T - TULP3 Intron 0.27 TCGA-CM-5861-01 12 31648768 31648768 A G DENND5B Silent p.P71P 0.40 TCGA-CM-5861-01 12 32136925 32136925 G A KIAA1551 Silent p.S1012S 0.43 TCGA-CM-5861-01 12 40422237 40422237 C T SLC2A13 Missense_Mutation p.R264Q 0.33 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 12 40962825 40962825 A - MUC19 3'UTR 0.26 TCGA-CM-5861-01 12 42481673 42481673 T C GXYLT1 Missense_Mutation p.Y413C 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-CM-5861-01 12 4479679 4479679 G - FGF23 Frame_Shift_Del p.R196Gfs*4 0.21 TCGA-CM-5861-01 12 45269051 45269051 C A NELL2 Missense_Mutation p.Q97H 0.22 deleterious(0) possibly_damaging(0.548) TCGA-CM-5861-01 12 46357888 46357888 A G SCAF11 Splice_Site p.X21_splice 0.36 TCGA-CM-5861-01 12 46582842 46582842 A G SLC38A1 Silent p.L459L 0.24 TCGA-CM-5861-01 12 48174737 48174737 G T SLC48A1 3'UTR 0.44 TCGA-CM-5861-01 12 4922655 4922655 A G KCNA6 3'UTR 0.08 TCGA-CM-5861-01 12 49491461 49491461 G A LMBR1L Silent p.H488H 0.42 TCGA-CM-5861-01 12 50188708 50188708 G A NCKAP5L Missense_Mutation p.R979C 0.41 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 12 50570681 50570681 T - LIMA1 3'UTR 0.10 TCGA-CM-5861-01 12 50570811 50570811 T C LIMA1 3'UTR 0.34 TCGA-CM-5861-01 12 52754592 52754592 C T KRT85 3'UTR 0.13 TCGA-CM-5861-01 12 52760901 52760901 T C KRT85 Missense_Mutation p.T97A 0.37 tolerated(0.65) benign(0.018) TCGA-CM-5861-01 12 52761104 52761104 C T KRT85 Missense_Mutation p.G29D 0.48 tolerated(0.11) possibly_damaging(0.517) TCGA-CM-5861-01 12 53700043 53700043 A G C12orf10 Missense_Mutation p.Y235C 0.38 deleterious(0) benign(0.416) TCGA-CM-5861-01 12 54675966 54675966 T G HNRNPA1 Nonsense_Mutation p.Y124* 0.43 TCGA-CM-5861-01 12 54798980 54798980 G - ITGA5 Frame_Shift_Del p.L399Wfs*26 0.38 TCGA-CM-5861-01 12 55367321 55367321 T C TESPA1 Intron 0.15 TCGA-CM-5861-01 12 55422827 55422828 - A NEUROD4 3'UTR 0.27 TCGA-CM-5861-01 12 56096915 56096915 G A ITGA7 Missense_Mutation p.A85V 0.36 deleterious(0) probably_damaging(0.93) TCGA-CM-5861-01 12 56428370 56428370 G A IKZF4 Missense_Mutation p.R338H 0.30 tolerated(0.22) benign(0.016) TCGA-CM-5861-01 12 56639316 56639316 C T ANKRD52 Missense_Mutation p.R750Q 0.33 tolerated(0.15) possibly_damaging(0.797) TCGA-CM-5861-01 12 56755194 56755194 C T APOF Missense_Mutation p.A266T 0.15 tolerated(0.34) benign(0.015) TCGA-CM-5861-01 12 5687596 5687596 C T ANO2 Silent p.R774R 0.10 TCGA-CM-5861-01 12 56999800 56999800 T - BAZ2A Frame_Shift_Del p.V772Sfs*9 0.25 TCGA-CM-5861-01 12 57588466 57588466 G T LRP1 Missense_Mutation p.E2725D 0.44 benign(0.047) TCGA-CM-5861-01 12 57640631 57640631 T C STAC3 Missense_Mutation p.M187V 0.33 deleterious(0.01) possibly_damaging(0.462) TCGA-CM-5861-01 12 57843334 57843334 C A INHBC Silent p.T196T 0.44 TCGA-CM-5861-01 12 57849245 57849245 G C INHBE 5'UTR 0.36 TCGA-CM-5861-01 12 6062743 6062743 A T VWF Missense_Mutation p.N2635K 0.35 tolerated(1) benign(0) TCGA-CM-5861-01 12 64803811 64803811 C T XPOT 5'UTR 0.32 TCGA-CM-5861-01 12 65514235 65514235 T C WIF1 Missense_Mutation p.I84V 0.35 tolerated(1) benign(0.379) TCGA-CM-5861-01 12 6575307 6575307 A - VAMP1 Intron 0.23 TCGA-CM-5861-01 12 6696607 6696607 A G CHD4 Silent p.N1274N 0.37 TCGA-CM-5861-01 12 67072743 67072743 A T GRIP1 5'UTR 0.31 TCGA-CM-5861-01 12 67706721 67706721 T - CAND1 3'UTR 0.36 TCGA-CM-5861-01 12 68054990 68054991 - A DYRK2 3'UTR 0.36 TCGA-CM-5861-01 12 68055953 68055954 - A DYRK2 3'UTR 0.36 TCGA-CM-5861-01 12 69080755 69080755 G A NUP107 5'UTR 0.39 TCGA-CM-5861-01 12 69233162 69233162 G A MDM2 Missense_Mutation p.D343N 0.25 tolerated(0.12) benign(0.326) TCGA-CM-5861-01 12 69962806 69962806 A G FRS2 5'UTR 0.35 TCGA-CM-5861-01 12 69968736 69968736 G A FRS2 3'UTR 0.41 TCGA-CM-5861-01 12 70723292 70723292 G A CNOT2 Missense_Mutation p.V110I 0.33 tolerated_low_confidence(0.4) benign(0.002) TCGA-CM-5861-01 12 7177938 7177939 - C C1S Frame_Shift_Ins p.R686Pfs*2 0.40 TCGA-CM-5861-01 12 71834071 71834071 C A LGR5 Missense_Mutation p.L71I 0.22 deleterious(0.02) possibly_damaging(0.512) TCGA-CM-5861-01 12 75601712 75601712 G A KCNC2 Missense_Mutation p.R18W 0.37 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 12 76424485 76424502 TGGGGCTGAGGCTTGGGT - PHLDA1 In_Frame_Del p.P341_Q346del 0.21 TCGA-CM-5861-01 12 76442093 76442093 A - NAP1L1 3'UTR 0.38 TCGA-CM-5861-01 12 7900108 7900108 G A CLEC4C Intron 0.50 TCGA-CM-5861-01 12 88440668 88440668 A G C12orf29 Missense_Mutation p.N235S 0.37 tolerated(0.89) benign(0.001) TCGA-CM-5861-01 12 9013767 9013767 A C A2ML1 Missense_Mutation p.N1126H 0.27 tolerated(0.15) benign(0.152) TCGA-CM-5861-01 12 9074317 9074317 A G PHC1 Missense_Mutation p.N143D 0.41 tolerated_low_confidence(0.1) possibly_damaging(0.626) TCGA-CM-5861-01 12 93101455 93101455 A G C12orf74 Silent p.V179V 0.24 TCGA-CM-5861-01 12 939283 939283 C T WNK1 Missense_Mutation p.S423L 0.37 deleterious(0) unknown(0) TCGA-CM-5861-01 12 96641384 96641384 A - ELK3 Frame_Shift_Del p.K293Nfs*49 0.24 TCGA-CM-5861-01 12 977110 977110 C T WNK1 Intron 0.33 TCGA-CM-5861-01 13 101936359 101936359 T G NALCN Missense_Mutation p.E353D 0.22 tolerated(0.53) benign(0.01) TCGA-CM-5861-01 13 103514821 103514821 C T BIVM-ERCC5 Missense_Mutation p.P867L 0.34 tolerated_low_confidence(0.58) benign(0.001) TCGA-CM-5861-01 13 106118539 106118539 T C DAOA 5'Flank 0.30 TCGA-CM-5861-01 13 114164697 114164697 G A TMCO3 Missense_Mutation p.V395M 0.34 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 13 21374359 21374359 T C XPO4 Missense_Mutation p.S695G 0.36 tolerated(0.39) benign(0.002) TCGA-CM-5861-01 13 23942607 23942607 C T SACS Silent p.T93T 0.34 TCGA-CM-5861-01 13 24852829 24852829 A G SPATA13 Intron 0.37 TCGA-CM-5861-01 13 25075782 25075782 G A PARP4 Missense_Mutation p.A108V 0.43 tolerated(0.38) benign(0.107) TCGA-CM-5861-01 13 25744147 25744147 C T AMER2 Silent p.S537S 0.38 TCGA-CM-5861-01 13 26129152 26129152 A G ATP8A2 Silent p.G403G 0.28 TCGA-CM-5861-01 13 27256963 27256963 A G WASF3 Silent p.P401P 0.37 TCGA-CM-5861-01 13 27256972 27256972 G A WASF3 Silent p.P404P 0.29 TCGA-CM-5861-01 13 27830354 27830354 T A RPL21 Silent p.R92R 0.38 TCGA-CM-5861-01 13 29599289 29599289 G A MTUS2 Missense_Mutation p.A162T 0.33 tolerated(0.05) benign(0.067) TCGA-CM-5861-01 13 29599603 29599603 C A MTUS2 Silent p.P266P 0.11 TCGA-CM-5861-01 13 32749696 32749696 C T FRY Missense_Mutation p.P783L 0.39 tolerated(0.58) benign(0.012) TCGA-CM-5861-01 13 32768298 32768298 G A FRY Missense_Mutation p.E1204K 0.21 deleterious(0) probably_damaging(0.961) TCGA-CM-5861-01 13 32900284 32900284 T C BRCA2 Missense_Mutation p.S158P 0.37 tolerated(0.54) benign(0.027) TCGA-CM-5861-01 13 33096357 33096357 T C N4BP2L2 Missense_Mutation p.N50D 0.42 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 13 36748962 36748962 G A SOHLH2 Missense_Mutation p.P306L 0.36 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 13 36903594 36903594 A C SPG20 Missense_Mutation p.S357A 0.29 tolerated(0.89) benign(0) TCGA-CM-5861-01 13 38229364 38229364 T C TRPC4 Missense_Mutation p.Y582C 0.13 tolerated(0.16) benign(0.317) TCGA-CM-5861-01 13 41767284 41767284 T C KBTBD7 Silent p.P370P 0.38 TCGA-CM-5861-01 13 45148689 45148689 G A TSC22D1 Nonsense_Mutation p.Q508* 0.09 TCGA-CM-5861-01 13 45964974 45964974 G A SLC25A30 3'Flank 0.36 TCGA-CM-5861-01 13 50296162 50296162 T C KPNA3 Missense_Mutation p.N219D 0.32 deleterious(0) probably_damaging(0.986) TCGA-CM-5861-01 13 51825974 51825974 G A FAM124A Silent p.T193T 0.32 TCGA-CM-5861-01 13 75863148 75863148 A G TBC1D4 Silent p.D1195D 0.33 TCGA-CM-5861-01 13 77631119 77631119 A G MYCBP2 Splice_Site p.X4441_splice 0.30 TCGA-CM-5861-01 13 79233231 79233231 T C RNF219 Missense_Mutation p.T9A 0.29 deleterious(0) benign(0.347) TCGA-CM-5861-01 13 86368942 86368942 C A SLITRK6 Missense_Mutation p.G568C 0.26 deleterious(0.01) probably_damaging(0.914) TCGA-CM-5861-01 13 88330857 88330857 T C SLITRK5 3'UTR 0.38 TCGA-CM-5861-01 13 95364246 95364246 G A SOX21 Missense_Mutation p.R20W 0.30 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 13 98637842 98637842 G A IPO5 Silent p.A131A 0.34 TCGA-CM-5861-01 14 101350576 101350576 G A RTL1 Nonsense_Mutation p.Q184* 0.35 TCGA-CM-5861-01 14 102028519 102028519 C T DIO3 Missense_Mutation p.A229V 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-CM-5861-01 14 102689167 102689167 G A WDR20 Missense_Mutation p.G504S 0.13 tolerated(0.76) probably_damaging(0.931) TCGA-CM-5861-01 14 102931568 102931568 A C TECPR2 Missense_Mutation p.Q1244P 0.38 deleterious(0) possibly_damaging(0.472) TCGA-CM-5861-01 14 104056728 104056728 C T APOPT1 3'UTR 0.46 TCGA-CM-5861-01 14 104570666 104570666 T C ASPG Missense_Mutation p.L260P 0.35 deleterious(0) probably_damaging(0.984) TCGA-CM-5861-01 14 104642296 104642296 C T KIF26A Silent p.F1057F 0.27 TCGA-CM-5861-01 14 104642401 104642401 G - KIF26A Frame_Shift_Del p.L1096Wfs*152 0.53 TCGA-CM-5861-01 14 105175056 105175056 A G INF2 Missense_Mutation p.K646E 0.12 deleterious(0) unknown(0) TCGA-CM-5861-01 14 105269412 105269413 - A ZBTB42 3'UTR 0.48 TCGA-CM-5861-01 14 105359342 105359342 C T CEP170B Missense_Mutation p.A1303V 0.25 deleterious(0) probably_damaging(0.919) TCGA-CM-5861-01 14 105409656 105409656 T A AHNAK2 Silent p.G4044G 0.25 TCGA-CM-5861-01 14 105409657 105409657 C A AHNAK2 Missense_Mutation p.G4044V 0.25 possibly_damaging(0.79) TCGA-CM-5861-01 14 105413904 105413904 C T AHNAK2 Silent p.A2628A 0.36 TCGA-CM-5861-01 14 106780816 106780816 C T IGHV4-28 Silent p.L16L 0.21 TCGA-CM-5861-01 14 19566039 19566039 A C POTEG Missense_Mutation p.K361N 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-CM-5861-01 14 20779552 20779552 T - CCNB1IP1 3'UTR 0.47 TCGA-CM-5861-01 14 20848607 20848607 T - TEP1 Frame_Shift_Del p.K1597Sfs*14 0.37 TCGA-CM-5861-01 14 23345174 23345174 C T LRP10 Silent p.D339D 0.29 TCGA-CM-5861-01 14 23354012 23354012 G A REM2 Missense_Mutation p.R78Q 0.44 deleterious(0.03) possibly_damaging(0.722) TCGA-CM-5861-01 14 23517531 23517531 C T CDH24 Silent p.P706P 0.33 TCGA-CM-5861-01 14 23531705 23531705 T C ACIN1 Missense_Mutation p.K1029E 0.52 probably_damaging(0.94) TCGA-CM-5861-01 14 24029552 24029552 T - AP1G2 Frame_Shift_Del p.N690Tfs*6 0.22 TCGA-CM-5861-01 14 24600705 24600705 G - RP11-468E2.6 Frame_Shift_Del p.G168Afs*15 0.40 TCGA-CM-5861-01 14 24653612 24653612 A C IPO4 Missense_Mutation p.V550G 0.29 deleterious(0) possibly_damaging(0.675) TCGA-CM-5861-01 14 25042963 25042963 G A CTSG Silent p.S216S 0.24 TCGA-CM-5861-01 14 28733849 28733849 C T BNIP3P1 RNA 0.41 TCGA-CM-5861-01 14 29238852 29238853 - A FOXG1 3'UTR 0.30 TCGA-CM-5861-01 14 29242588 29242588 G A C14orf23 Missense_Mutation p.R24K 0.41 deleterious_low_confidence(0) benign(0.14) TCGA-CM-5861-01 14 30046610 30046610 C T PRKD1 Missense_Mutation p.R858H 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 14 31590658 31590658 C T HECTD1 Silent p.T1723T 0.36 TCGA-CM-5861-01 14 31619347 31619348 - C HECTD1 Frame_Shift_Ins p.R672Kfs*9 0.26 TCGA-CM-5861-01 14 45716294 45716294 T - MIS18BP1 Frame_Shift_Del p.M66* 0.27 TCGA-CM-5861-01 14 50100396 50100396 C T DNAAF2 Missense_Mutation p.S491N 0.30 tolerated(0.68) benign(0.001) TCGA-CM-5861-01 14 50886697 50886697 T C MAP4K5 3'UTR 0.24 TCGA-CM-5861-01 14 52164854 52164854 C T FRMD6 Intron 0.31 TCGA-CM-5861-01 14 53513330 53513330 T - DDHD1 3'UTR 0.62 TCGA-CM-5861-01 14 54884671 54884671 T C CDKN3 Splice_Site p.X184_splice 0.33 TCGA-CM-5861-01 14 55819690 55819690 A G FBXO34 3'UTR 0.40 TCGA-CM-5861-01 14 58030965 58030965 T A SLC35F4 Missense_Mutation p.N485I 0.33 tolerated(0.1) possibly_damaging(0.606) TCGA-CM-5861-01 14 58698910 58698910 A - ACTR10 Frame_Shift_Del p.A335Hfs*63 0.26 TCGA-CM-5861-01 14 58932698 58932698 T - KIAA0586 Frame_Shift_Del p.S790Qfs*8 0.27 TCGA-CM-5861-01 14 60074023 60074023 G A RTN1 Silent p.T651T 0.32 TCGA-CM-5861-01 14 61186654 61186654 A G SIX4 Missense_Mutation p.I458T 0.39 tolerated(0.13) benign(0.003) TCGA-CM-5861-01 14 63174352 63174352 T C KCNH5 Silent p.V947V 0.36 TCGA-CM-5861-01 14 64675620 64675620 C T SYNE2 Missense_Mutation p.R6116C 0.17 probably_damaging(1) TCGA-CM-5861-01 14 64939914 64939914 A G AKAP5 3'UTR 0.32 TCGA-CM-5861-01 14 65009696 65009696 A G HSPA2 3'UTR 0.38 TCGA-CM-5861-01 14 65220467 65220467 T C SPTB Silent p.P2130P 0.11 TCGA-CM-5861-01 14 67291192 67291192 G T GPHN Nonsense_Mutation p.E68* 0.37 TCGA-CM-5861-01 14 68249587 68249587 G A ZFYVE26 Missense_Mutation p.R1428W 0.29 deleterious(0) possibly_damaging(0.702) TCGA-CM-5861-01 14 68270950 68270950 G A ZFYVE26 Missense_Mutation p.H435Y 0.22 tolerated(0.06) probably_damaging(0.909) TCGA-CM-5861-01 14 69925138 69925138 C T SLC39A9 Missense_Mutation p.A251V 0.21 deleterious(0) probably_damaging(0.99) TCGA-CM-5861-01 14 69966879 69966879 A - PLEKHD1 Frame_Shift_Del p.K68Rfs*36 0.37 TCGA-CM-5861-01 14 71200483 71200483 C T MAP3K9 Missense_Mutation p.D687N 0.26 tolerated(0.44) benign(0) TCGA-CM-5861-01 14 72117190 72117190 G T SIPA1L1 Nonsense_Mutation p.G653* 0.42 TCGA-CM-5861-01 14 74824463 74824463 G - VRTN Frame_Shift_Del p.G328Afs*47 0.25 TCGA-CM-5861-01 14 75230703 75230703 C A YLPM1 Missense_Mutation p.P171T 0.36 unknown(0) TCGA-CM-5861-01 14 75388247 75388247 C A RPS6KL1 5'UTR 0.51 TCGA-CM-5861-01 14 75515823 75515824 GA - MLH3 Frame_Shift_Del p.S179Tfs*13 0.30 TCGA-CM-5861-01 14 77229171 77229171 G - VASH1 Frame_Shift_Del p.K5Rfs*146 0.40 TCGA-CM-5861-01 14 77685915 77685915 T C TMEM63C Silent p.N75N 0.26 TCGA-CM-5861-01 14 77732621 77732621 C T NGB 3'UTR 0.30 TCGA-CM-5861-01 14 86092726 86092726 A G FLRT2 3'UTR 0.29 TCGA-CM-5861-01 14 89338025 89338025 A C TTC8 Missense_Mutation p.E394D 0.20 tolerated(0.44) benign(0.066) TCGA-CM-5861-01 14 91779957 91779957 G A CCDC88C Missense_Mutation p.R735C 0.33 deleterious(0.03) benign(0.008) TCGA-CM-5861-01 14 91804486 91804486 C T CCDC88C Missense_Mutation p.A305T 0.08 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 14 92470381 92470381 T C TRIP11 Silent p.S1313S 0.17 TCGA-CM-5861-01 14 93282687 93282687 T C GOLGA5 Missense_Mutation p.L471P 0.32 deleterious(0) probably_damaging(0.942) TCGA-CM-5861-01 14 93730184 93730184 A - BTBD7 Frame_Shift_Del p.Y440Mfs*28 0.11 TCGA-CM-5861-01 14 95057224 95057224 G A SERPINA5 Silent p.Q343Q 0.27 TCGA-CM-5861-01 14 96757261 96757261 A G ATG2B Missense_Mutation p.V1864A 0.30 deleterious(0.04) benign(0.026) TCGA-CM-5861-01 15 101098934 101098934 C T RNU6-181P 3'Flank 0.33 TCGA-CM-5861-01 15 22742633 22742633 C T GOLGA6L1 Nonsense_Mutation p.Q340* 0.16 TCGA-CM-5861-01 15 23811369 23811369 C T MKRN3 Missense_Mutation p.A147V 0.33 tolerated(0.12) benign(0.005) TCGA-CM-5861-01 15 25925385 25925385 G A ATP10A Missense_Mutation p.A1250V 0.11 deleterious(0.04) benign(0.009) TCGA-CM-5861-01 15 30665244 30665244 C T CHRFAM7A Missense_Mutation p.D89N 0.13 deleterious(0.04) probably_damaging(1) TCGA-CM-5861-01 15 33954430 33954430 G A RYR3 Missense_Mutation p.A1567T 0.38 benign(0.386) TCGA-CM-5861-01 15 35273929 35273929 G A ZNF770 Silent p.Y569Y 0.37 TCGA-CM-5861-01 15 38990597 38990597 C T C15orf53 Missense_Mutation p.R131C 0.36 tolerated_low_confidence(0.13) benign(0) TCGA-CM-5861-01 15 40628989 40628989 C T C15orf52 Silent p.Q300Q 0.41 TCGA-CM-5861-01 15 40648424 40648424 C - PHGR1 Frame_Shift_Del p.H59Tfs*49 0.20 TCGA-CM-5861-01 15 40710478 40710478 C - IVD 3'UTR 0.27 TCGA-CM-5861-01 15 42058861 42058861 C T MGA Missense_Mutation p.R2861W 0.34 deleterious(0) possibly_damaging(0.847) TCGA-CM-5861-01 15 42280307 42280307 G A PLA2G4E Silent p.L591L 0.19 TCGA-CM-5861-01 15 42434351 42434351 T C PLA2G4F Missense_Mutation p.N794S 0.38 tolerated(0.6) benign(0.044) TCGA-CM-5861-01 15 42679957 42679957 C T CAPN3 Missense_Mutation p.R169C 0.26 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 15 43482274 43482274 T C CCNDBP1 Missense_Mutation p.V118A 0.15 deleterious(0.01) probably_damaging(0.958) TCGA-CM-5861-01 15 43621761 43621761 C T LCMT2 Silent p.L309L 0.44 TCGA-CM-5861-01 15 44057718 44057719 - A PDIA3 Frame_Shift_Ins p.M227Nfs*7 0.28 TCGA-CM-5861-01 15 44087247 44087247 C T SERINC4 Missense_Mutation p.R503H 0.20 deleterious_low_confidence(0.04) benign(0.002) TCGA-CM-5861-01 15 44136210 44136210 A G WDR76 Silent p.V330V 0.36 TCGA-CM-5861-01 15 45410089 45410089 T C DUOXA2 Silent p.C315C 0.23 TCGA-CM-5861-01 15 48703303 48703303 T C FBN1 Missense_Mutation p.T2834A 0.12 benign(0.004) TCGA-CM-5861-01 15 50570633 50570633 A G GABPB1 3'UTR 0.56 TCGA-CM-5861-01 15 58007033 58007033 G A POLR2M 3'UTR 0.16 TCGA-CM-5861-01 15 59323704 59323705 AA - RNF111 Frame_Shift_Del p.K229Rfs*23 0.31 TCGA-CM-5861-01 15 59499780 59499781 TG - LDHAL6B Frame_Shift_Del p.L214Rfs*18 0.28 TCGA-CM-5861-01 15 62238025 62238025 A G VPS13C Silent p.D1679D 0.34 TCGA-CM-5861-01 15 63029092 63029092 A C TLN2 Missense_Mutation p.E1125A 0.30 deleterious(0) benign(0.065) TCGA-CM-5861-01 15 63054504 63054504 G T TLN2 Missense_Mutation p.A1605S 0.16 deleterious(0.01) benign(0.006) TCGA-CM-5861-01 15 63125593 63125593 A - TLN2 Intron 0.35 TCGA-CM-5861-01 15 63446141 63446141 A G RPS27L 3'UTR 0.37 TCGA-CM-5861-01 15 65273309 65273309 G A SPG21 Nonsense_Mutation p.R40* 0.35 TCGA-CM-5861-01 15 65502098 65502098 C T CILP 5'UTR 0.27 TCGA-CM-5861-01 15 65625614 65625614 C A IGDCC3 Missense_Mutation p.Q321H 0.46 tolerated(0.12) possibly_damaging(0.733) TCGA-CM-5861-01 15 65681240 65681240 G - IGDCC4 Frame_Shift_Del p.T872Qfs*11 0.42 TCGA-CM-5861-01 15 66618289 66618289 A G DIS3L Silent p.L596L 0.42 TCGA-CM-5861-01 15 66618308 66618308 G A DIS3L Missense_Mutation p.V603I 0.33 tolerated(0.79) benign(0.001) TCGA-CM-5861-01 15 66795209 66795209 G A RPL4 Intron 0.23 TCGA-CM-5861-01 15 66850194 66850194 T A LCTL Missense_Mutation p.D263V 0.40 deleterious(0) possibly_damaging(0.71) TCGA-CM-5861-01 15 69561652 69561652 C T GLCE 3'UTR 0.38 TCGA-CM-5861-01 15 70349849 70349849 G A TLE3 Silent p.A403A 0.44 TCGA-CM-5861-01 15 71125258 71125258 G A LARP6 Silent p.P203P 0.34 TCGA-CM-5861-01 15 72338253 72338253 C T MYO9A Missense_Mutation p.V218M 0.32 deleterious(0) probably_damaging(0.93) TCGA-CM-5861-01 15 72875688 72875688 C T ARIH1 3'UTR 0.28 TCGA-CM-5861-01 15 73616241 73616241 G A HCN4 Silent p.S731S 0.23 TCGA-CM-5861-01 15 74468463 74468463 T C ISLR Missense_Mutation p.F422L 0.24 tolerated_low_confidence(1) unknown(0) TCGA-CM-5861-01 15 74468771 74468771 G A ISLR 3'UTR 0.36 TCGA-CM-5861-01 15 74487991 74487991 A G STRA6 Splice_Site p.X183_splice 0.15 TCGA-CM-5861-01 15 75500894 75500894 T C C15orf39 Silent p.H835H 0.46 TCGA-CM-5861-01 15 75815517 75815517 C T PTPN9 Missense_Mutation p.V123I 0.34 tolerated(0.08) benign(0.197) TCGA-CM-5861-01 15 76496742 76496742 G A C15orf27 3'UTR 0.29 TCGA-CM-5861-01 15 79060530 79060530 G - ADAMTS7 Frame_Shift_Del p.L864Wfs*93 0.33 TCGA-CM-5861-01 15 79296468 79296468 C T RASGRF1 Missense_Mutation p.G725S 0.33 tolerated(0.46) benign(0.026) TCGA-CM-5861-01 15 80263040 80263040 A G BCL2A1 Splice_Site p.X140_splice 0.15 TCGA-CM-5861-01 15 83396000 83396000 T C AC105339.2 5'Flank 0.29 TCGA-CM-5861-01 15 83488232 83488232 T C WHAMM Missense_Mutation p.L421P 0.19 tolerated(0.12) probably_damaging(1) TCGA-CM-5861-01 15 83926063 83926063 A C BNC1 3'UTR 0.18 TCGA-CM-5861-01 15 86291027 86291028 - T AKAP13 3'Flank 0.35 TCGA-CM-5861-01 15 92987984 92987984 C T ST8SIA2 Missense_Mutation p.R223W 0.34 possibly_damaging(0.901) TCGA-CM-5861-01 15 96876642 96876642 T C NR2F2 Intron 0.22 TCGA-CM-5861-01 15 99442809 99442809 A - IGF1R Frame_Shift_Del p.N404Tfs*6 0.22 TCGA-CM-5861-01 16 10861566 10861566 C A TVP23A 3'UTR 0.59 TCGA-CM-5861-01 16 1130061 1130061 C T SSTR5 3'UTR 0.42 TCGA-CM-5861-01 16 11361846 11361846 G A TNP2 3'UTR 0.36 TCGA-CM-5861-01 16 1265356 1265356 C T CACNA1H Silent p.R1718R 0.15 TCGA-CM-5861-01 16 1266959 1266959 C A CACNA1H Missense_Mutation p.L1758I 0.35 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 16 1278569 1278569 G A TPSB2 3'UTR 0.26 TCGA-CM-5861-01 16 1544258 1544258 G A TELO2 5'UTR 0.43 TCGA-CM-5861-01 16 1550419 1550419 C A TELO2 Silent p.R358R 0.42 TCGA-CM-5861-01 16 15771693 15771693 G A NDE1 Silent p.R91R 0.17 TCGA-CM-5861-01 16 1642501 1642501 G A IFT140 Missense_Mutation p.T153M 0.19 deleterious(0) possibly_damaging(0.84) TCGA-CM-5861-01 16 1797033 1797033 C T MAPK8IP3 Missense_Mutation p.P250S 0.38 tolerated(0.23) benign(0.211) TCGA-CM-5861-01 16 1816390 1816390 C A MAPK8IP3 Silent p.S932S 0.16 TCGA-CM-5861-01 16 19725573 19725573 G T KNOP1 Missense_Mutation p.P262H 0.37 deleterious(0.02) possibly_damaging(0.723) TCGA-CM-5861-01 16 19883375 19883375 C - GPRC5B Frame_Shift_Del p.D265Mfs*143 0.31 TCGA-CM-5861-01 16 2024680 2024680 G T TBL3 Missense_Mutation p.G127C 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-CM-5861-01 16 2026250 2026250 C T TBL3 Silent p.G409G 0.32 TCGA-CM-5861-01 16 20328684 20328684 G A GP2 Missense_Mutation p.R426C 0.27 tolerated(0.14) possibly_damaging(0.892) TCGA-CM-5861-01 16 2049084 2049084 G A ZNF598 Missense_Mutation p.P698S 0.54 benign(0.301) TCGA-CM-5861-01 16 20996905 20996905 C T DNAH3 Missense_Mutation p.V2387M 0.42 tolerated(0.12) benign(0.045) TCGA-CM-5861-01 16 2160273 2160273 A G PKD1 Missense_Mutation p.I1632T 0.26 probably_damaging(0.987) TCGA-CM-5861-01 16 2286845 2286845 G A DNASE1L2 Missense_Mutation p.A10T 0.33 tolerated(0.32) benign(0.001) TCGA-CM-5861-01 16 2287954 2287954 A G DNASE1L2 Missense_Mutation p.S260G 0.08 tolerated(0.2) benign(0.023) TCGA-CM-5861-01 16 23400224 23400224 T C COG7 3'UTR 0.15 TCGA-CM-5861-01 16 23641669 23641669 T C PALB2 Silent p.Q602Q 0.16 TCGA-CM-5861-01 16 2550973 2550973 G A TBC1D24 3'UTR 0.29 TCGA-CM-5861-01 16 27232188 27232188 G - KDM8 3'Flank 0.27 TCGA-CM-5861-01 16 27472657 27472657 C T GTF3C1 3'UTR 0.19 TCGA-CM-5861-01 16 2820603 2820603 A G SRRM2 Splice_Site p.X2712_splice 0.26 TCGA-CM-5861-01 16 28488925 28488925 G A CLN3 Missense_Mutation p.A410V 0.34 deleterious(0.02) possibly_damaging(0.624) TCGA-CM-5861-01 16 28617107 28617107 G A SULT1A1 3'UTR 0.16 TCGA-CM-5861-01 16 28847336 28847336 C G ATXN2L Missense_Mutation p.P993R 0.28 deleterious(0) possibly_damaging(0.833) TCGA-CM-5861-01 16 28992863 28992863 G A SPNS1 Missense_Mutation p.V246M 0.36 deleterious(0.01) possibly_damaging(0.781) TCGA-CM-5861-01 16 29677454 29677454 G T SPN 3'UTR 0.40 TCGA-CM-5861-01 16 29889629 29889629 C T SEZ6L2 Missense_Mutation p.R564H 0.33 deleterious(0.02) possibly_damaging(0.88) TCGA-CM-5861-01 16 3025682 3025682 G A PKMYT1 Silent p.C170C 0.38 TCGA-CM-5861-01 16 30567242 30567242 G - ZNF764 Frame_Shift_Del p.P167Lfs*52 0.35 TCGA-CM-5861-01 16 30593830 30593830 A G ZNF785 3'UTR 0.11 TCGA-CM-5861-01 16 30749457 30749457 C T SRCAP Missense_Mutation p.A2699V 0.40 unknown(0) TCGA-CM-5861-01 16 31151823 31151823 G T PRSS36 Silent p.P719P 0.37 TCGA-CM-5861-01 16 31477651 31477651 T G ARMC5 Missense_Mutation p.L750R 0.34 deleterious(0) probably_damaging(0.992) TCGA-CM-5861-01 16 33020772 33020773 - G IGHV3OR16-8 Frame_Shift_Ins p.K62Efs*10 0.23 TCGA-CM-5861-01 16 33647669 33647669 G C RP11-812E19.9 Missense_Mutation p.L10V 0.35 deleterious_low_confidence(0.01) benign(0.287) TCGA-CM-5861-01 16 3454559 3454559 C A ZNF174 Missense_Mutation p.S179Y 0.29 tolerated(0.13) benign(0.344) TCGA-CM-5861-01 16 3639043 3639043 G A SLX4 Silent p.S1532S 0.35 TCGA-CM-5861-01 16 4414673 4414673 C A CORO7 Missense_Mutation p.E354D 0.38 tolerated(0.28) possibly_damaging(0.745) TCGA-CM-5861-01 16 48368140 48368140 C G LONP2 Missense_Mutation p.H603Q 0.43 tolerated(0.58) benign(0.002) TCGA-CM-5861-01 16 4943236 4943236 G A PPL Missense_Mutation p.A543V 0.38 deleterious(0.04) benign(0.371) TCGA-CM-5861-01 16 49670999 49670999 C T ZNF423 Silent p.T688T 0.41 TCGA-CM-5861-01 16 49671399 49671399 G A ZNF423 Missense_Mutation p.P555L 0.37 deleterious(0.01) benign(0.266) TCGA-CM-5861-01 16 50750887 50750887 T C NOD2 Splice_Site p.X877_splice 0.38 TCGA-CM-5861-01 16 53476601 53476601 T C RBL2 Missense_Mutation p.W135R 0.37 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 16 55909137 55909137 G A CES5A Intron 0.16 TCGA-CM-5861-01 16 57416112 57416112 T C CX3CL1 Missense_Mutation p.M121T 0.30 tolerated(0.51) benign(0.001) TCGA-CM-5861-01 16 57503153 57503153 C T POLR2C Missense_Mutation p.T112M 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-CM-5861-01 16 57789769 57789769 C A KATNB1 Missense_Mutation p.A528D 0.30 deleterious(0) probably_damaging(0.948) TCGA-CM-5861-01 16 58590801 58590801 C T CNOT1 Missense_Mutation p.G810D 0.34 tolerated(0.25) benign(0) TCGA-CM-5861-01 16 58590897 58590897 A G CNOT1 Missense_Mutation p.V778A 0.46 tolerated(1) benign(0) TCGA-CM-5861-01 16 61935127 61935127 A G CDH8 Missense_Mutation p.L168P 0.39 tolerated(0.36) benign(0.117) TCGA-CM-5861-01 16 628878 628878 T G PIGQ Missense_Mutation p.L388R 0.39 deleterious(0) probably_damaging(0.916) TCGA-CM-5861-01 16 66642246 66642246 C T CMTM3 Missense_Mutation p.A61V 0.33 deleterious(0.05) benign(0.05) TCGA-CM-5861-01 16 66920280 66920280 C T PDP2 3'UTR 0.33 TCGA-CM-5861-01 16 66947178 66947178 G T CDH16 Missense_Mutation p.L304I 0.38 tolerated(0.65) possibly_damaging(0.447) TCGA-CM-5861-01 16 66998283 66998283 G A CES3 Missense_Mutation p.G195D 0.17 deleterious(0) probably_damaging(0.983) TCGA-CM-5861-01 16 67183530 67183530 C T B3GNT9 Missense_Mutation p.A287T 0.43 deleterious(0) probably_damaging(0.993) TCGA-CM-5861-01 16 67354729 67354730 - C KCTD19 Frame_Shift_Ins p.W22Lfs*43 0.15 TCGA-CM-5861-01 16 67360802 67360802 C T LRRC36 Missense_Mutation p.R13C 0.37 deleterious(0.02) benign(0.087) TCGA-CM-5861-01 16 67572603 67572603 C - FAM65A Frame_Shift_Del p.P66Hfs*36 0.37 TCGA-CM-5861-01 16 67702260 67702260 G A C16orf86 Silent p.L237L 0.17 TCGA-CM-5861-01 16 67863374 67863374 C A CENPT Missense_Mutation p.R411M 0.09 deleterious(0.01) possibly_damaging(0.655) TCGA-CM-5861-01 16 67915672 67915672 T C EDC4 Silent p.C976C 0.44 TCGA-CM-5861-01 16 67920036 67920036 C T NRN1L Silent p.R124R 0.37 TCGA-CM-5861-01 16 68263990 68263990 C T ESRP2 3'UTR 0.40 TCGA-CM-5861-01 16 68867505 68867505 A - CDH1 3'UTR 0.35 TCGA-CM-5861-01 16 71668720 71668720 G A MARVELD3 Intron 0.19 TCGA-CM-5861-01 16 71890234 71890234 A G ATXN1L 3'UTR 0.33 TCGA-CM-5861-01 16 72094359 72094359 C A HP Missense_Mutation p.P264H 0.19 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 16 72991665 72991666 - G ZFHX3 Frame_Shift_Ins p.S794Lfs*17 0.15 TCGA-CM-5861-01 16 74712830 74712830 T C MLKL Silent p.S335S 0.32 TCGA-CM-5861-01 16 747318 747318 G T FBXL16 Missense_Mutation p.L30M 0.25 tolerated(0.17) probably_damaging(0.994) TCGA-CM-5861-01 16 75589735 75589735 C T TMEM231 Silent p.L121L 0.28 TCGA-CM-5861-01 16 77323237 77323237 T C ADAMTS18 Silent p.S1158S 0.28 TCGA-CM-5861-01 16 778928 778928 G - HAGHL Intron 0.63 TCGA-CM-5861-01 16 783296 783296 A G NARFL Splice_Site p.X275_splice 0.34 TCGA-CM-5861-01 16 81015439 81015439 C T CMC2 Missense_Mutation p.R42Q 0.37 tolerated(0.26) benign(0.184) TCGA-CM-5861-01 16 81253919 81253919 A G PKD1L2 Silent p.T19T 0.40 TCGA-CM-5861-01 16 81743358 81743358 T C CMIP Missense_Mutation p.L759P 0.25 deleterious(0) probably_damaging(0.983) TCGA-CM-5861-01 16 84101972 84101972 G - MBTPS1 Frame_Shift_Del p.F682Sfs*13 0.14 TCGA-CM-5861-01 16 84203492 84203492 A G DNAAF1 Missense_Mutation p.E353G 0.38 tolerated(0.2) benign(0.002) TCGA-CM-5861-01 16 84213651 84213651 G - TAF1C Frame_Shift_Del p.Q534Sfs*28 0.31 TCGA-CM-5861-01 16 84691442 84691442 G - KLHL36 Frame_Shift_Del p.G345Afs*39 0.32 TCGA-CM-5861-01 16 87637037 87637037 C T JPH3 Silent p.Y95Y 0.36 TCGA-CM-5861-01 16 88504023 88504023 C T ZNF469 Missense_Mutation p.A3354V 0.50 benign(0.003) TCGA-CM-5861-01 16 8873401 8873401 C T ABAT Silent p.P445P 0.29 TCGA-CM-5861-01 16 89804108 89804108 T C FANCA 3'UTR 0.29 TCGA-CM-5861-01 17 11511584 11511584 C T DNAH9 Silent p.L186L 0.35 TCGA-CM-5861-01 17 11671879 11671879 A T DNAH9 Missense_Mutation p.K2427M 0.38 benign(0.266) TCGA-CM-5861-01 17 12862157 12862157 G A ARHGAP44 Missense_Mutation p.R489H 0.44 deleterious(0) probably_damaging(0.972) TCGA-CM-5861-01 17 13504314 13504314 G A HS3ST3A1 Missense_Mutation p.R45C 0.24 tolerated_low_confidence(0.22) benign(0.23) TCGA-CM-5861-01 17 1369024 1369024 C A MYO1C Missense_Mutation p.R1063L 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CM-5861-01 17 1378233 1378233 G A MYO1C Silent p.T556T 0.40 TCGA-CM-5861-01 17 18284722 18284722 G A EVPLL Silent p.Q35Q 0.34 TCGA-CM-5861-01 17 18681919 18681919 C T FBXW10 Nonsense_Mutation p.Q823* 0.14 TCGA-CM-5861-01 17 19470101 19470102 AG - SLC47A1 Splice_Site p.X370_splice 0.11 TCGA-CM-5861-01 17 19729452 19729453 - T ULK2 Frame_Shift_Ins p.S279Ifs*64 0.33 TCGA-CM-5861-01 17 2605320 2605320 G A CLUH Silent p.H131H 0.32 TCGA-CM-5861-01 17 26084320 26084322 CTT - NOS2 In_Frame_Del p.K1138del 0.33 TCGA-CM-5861-01 17 26691665 26691665 C A VTN 3'Flank 0.15 TCGA-CM-5861-01 17 26861832 26861832 C - FOXN1 Frame_Shift_Del p.P416Qfs*134 0.31 TCGA-CM-5861-01 17 26940154 26940154 T G SGK494 Missense_Mutation p.K140T 0.30 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 17 27438520 27438520 T G MYO18A Missense_Mutation p.N941T 0.36 tolerated(0.11) possibly_damaging(0.673) TCGA-CM-5861-01 17 27778672 27778672 C T TAOK1 Missense_Mutation p.H36Y 0.35 deleterious(0) probably_damaging(0.982) TCGA-CM-5861-01 17 27943733 27943733 A G CORO6 Missense_Mutation p.C331R 0.19 deleterious(0) probably_damaging(0.996) TCGA-CM-5861-01 17 27963760 27963760 G A SSH2 Silent p.H469H 0.32 TCGA-CM-5861-01 17 28749781 28749782 - A CPD Frame_Shift_Ins p.I467Nfs*3 0.28 TCGA-CM-5861-01 17 29556250 29556250 C T NF1 Missense_Mutation p.R873C 0.32 deleterious(0) probably_damaging(0.988) TCGA-CM-5861-01 17 29632014 29632014 G A EVI2B Missense_Mutation p.A205V 0.37 deleterious(0) possibly_damaging(0.866) TCGA-CM-5861-01 17 33445525 33445525 A G RAD51D Intron 0.42 TCGA-CM-5861-01 17 33475299 33475299 C T UNC45B Missense_Mutation p.A6V 0.35 deleterious(0.03) possibly_damaging(0.757) TCGA-CM-5861-01 17 33768929 33768929 G T SLFN13 Silent p.A525A 0.20 TCGA-CM-5861-01 17 34313607 34313607 G A CCL14 Nonsense_Mutation p.Q27* 0.17 TCGA-CM-5861-01 17 35297652 35297652 C T LHX1 Missense_Mutation p.A79V 0.45 tolerated(0.1) probably_damaging(0.983) TCGA-CM-5861-01 17 35549099 35549099 C T ACACA Missense_Mutation p.G1450S 0.37 deleterious(0.03) probably_damaging(1) TCGA-CM-5861-01 17 35873083 35873083 T - DUSP14 3'UTR 0.21 TCGA-CM-5861-01 17 3628298 3628298 A - GSG2 Frame_Shift_Del p.K358Rfs*15 0.29 TCGA-CM-5861-01 17 36935763 36935763 C T PIP4K2B Missense_Mutation p.G176D 0.45 deleterious(0.02) possibly_damaging(0.794) TCGA-CM-5861-01 17 37224018 37224018 A - PLXDC1 3'UTR 0.30 TCGA-CM-5861-01 17 37627688 37627688 C - CDK12 Frame_Shift_Del p.P536Hfs*74 0.27 TCGA-CM-5861-01 17 37762438 37762438 C T NEUROD2 Missense_Mutation p.A139T 0.43 tolerated(0.18) possibly_damaging(0.539) TCGA-CM-5861-01 17 37883088 37883088 C A ERBB2 Silent p.A997A 0.20 TCGA-CM-5861-01 17 39165244 39165244 C T KRTAP3-1 Missense_Mutation p.C28Y 0.23 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-CM-5861-01 17 3947589 3947589 G A ZZEF1 Missense_Mutation p.S2032L 0.35 tolerated(0.33) benign(0) TCGA-CM-5861-01 17 39564821 39564821 C - AC003958.2 RNA 0.32 TCGA-CM-5861-01 17 39846368 39846368 A G EIF1 Missense_Mutation p.E75G 0.33 deleterious(0.02) possibly_damaging(0.774) TCGA-CM-5861-01 17 39881227 39881227 T G HAP1 Missense_Mutation p.E529A 0.28 deleterious(0) possibly_damaging(0.486) TCGA-CM-5861-01 17 39967384 39967384 C A LEPREL4 Missense_Mutation p.E205D 0.41 deleterious(0.03) possibly_damaging(0.816) TCGA-CM-5861-01 17 40342899 40342899 G A GHDC Nonsense_Mutation p.R369* 0.12 TCGA-CM-5861-01 17 40467640 40467640 A - STAT3 3'UTR 0.33 TCGA-CM-5861-01 17 40622181 40622181 T C ATP6V0A1 Missense_Mutation p.L123P 0.40 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 17 40839921 40839921 G A CNTNAP1 Missense_Mutation p.V410M 0.40 deleterious(0.01) possibly_damaging(0.866) TCGA-CM-5861-01 17 4085531 4085531 T - ANKFY1 Frame_Shift_Del p.N731Tfs*63 0.08 TCGA-CM-5861-01 17 40946651 40946651 C A WNK4 Missense_Mutation p.P772H 0.40 deleterious(0.05) unknown(0) TCGA-CM-5861-01 17 41165087 41165087 C - IFI35 Frame_Shift_Del p.L50Wfs*17 0.31 TCGA-CM-5861-01 17 42273403 42273404 - T ATXN7L3 Frame_Shift_Ins p.N181Kfs*5 0.34 TCGA-CM-5861-01 17 42330616 42330616 G T SLC4A1 Silent p.T727T 0.26 TCGA-CM-5861-01 17 42330664 42330664 G A SLC4A1 Silent p.G711G 0.61 TCGA-CM-5861-01 17 42392674 42392674 G A RUNDC3A Missense_Mutation p.V261I 0.37 tolerated(0.24) probably_damaging(0.994) TCGA-CM-5861-01 17 42849784 42849784 C T ADAM11 Missense_Mutation p.P210S 0.26 tolerated(0.71) benign(0.01) TCGA-CM-5861-01 17 43227983 43227983 T - HEXIM1 3'UTR 0.26 TCGA-CM-5861-01 17 43342583 43342583 G A SPATA32 5'Flank 0.35 TCGA-CM-5861-01 17 43592511 43592511 T C LRRC37A4P RNA 0.30 TCGA-CM-5861-01 17 43922642 43922642 G A SPPL2C Missense_Mutation p.V124I 0.27 tolerated(0.13) benign(0.038) TCGA-CM-5861-01 17 44116576 44116576 A G KANSL1 Missense_Mutation p.S737P 0.26 tolerated(0.14) benign(0.031) TCGA-CM-5861-01 17 46507480 46507480 C T SKAP1 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) benign(0.043) TCGA-CM-5861-01 17 47247032 47247032 G A B4GALNT2 Missense_Mutation p.R548Q 0.57 tolerated(1) benign(0) TCGA-CM-5861-01 17 47301913 47301914 TG - PHOSPHO1 Frame_Shift_Del p.H191Qfs*178 0.38 TCGA-CM-5861-01 17 4837352 4837352 G A GP1BA Missense_Mutation p.V485I 0.39 tolerated(0.53) unknown(0) TCGA-CM-5861-01 17 49073995 49073995 T G SPAG9 Missense_Mutation p.K633N 0.27 deleterious(0.03) possibly_damaging(0.811) TCGA-CM-5861-01 17 53038560 53038560 G T TOM1L1 Intron 0.35 TCGA-CM-5861-01 17 5404959 5404959 C A NLRP1 3'UTR 0.47 TCGA-CM-5861-01 17 5462686 5462686 G A NLRP1 Silent p.L444L 0.30 TCGA-CM-5861-01 17 55123356 55123356 C T RNF126P1 RNA 0.38 TCGA-CM-5861-01 17 57058284 57058284 G A PPM1E Silent p.L720L 0.19 TCGA-CM-5861-01 17 57105965 57105965 T C TRIM37 Missense_Mutation p.T690A 0.31 tolerated_low_confidence(0.08) benign(0.001) TCGA-CM-5861-01 17 57232567 57232567 C T SKA2 5'UTR 0.58 TCGA-CM-5861-01 17 57970683 57970683 G - RPS6KB1 Frame_Shift_Del 0.42 TCGA-CM-5861-01 17 58034652 58034652 C T RNFT1 Missense_Mutation p.G313E 0.22 tolerated(0.07) possibly_damaging(0.642) TCGA-CM-5861-01 17 61776411 61776411 T C LIMD2 Missense_Mutation p.S21G 0.40 tolerated(0.57) benign(0) TCGA-CM-5861-01 17 62291253 62291253 C T TEX2 Missense_Mutation p.V109I 0.37 tolerated_low_confidence(0.29) benign(0.007) TCGA-CM-5861-01 17 65074365 65074365 T C HELZ 3'UTR 0.35 TCGA-CM-5861-01 17 6531467 6531467 T C KIAA0753 Missense_Mutation p.I230V 0.23 tolerated(0.59) probably_damaging(0.953) TCGA-CM-5861-01 17 66270150 66270150 C - SLC16A6 Frame_Shift_Del p.L99Yfs*39 0.39 TCGA-CM-5861-01 17 66416526 66416526 C T ARSG Silent p.S500S 0.38 TCGA-CM-5861-01 17 66891117 66891117 G A ABCA8 Silent p.H894H 0.17 TCGA-CM-5861-01 17 67039646 67039646 G A ABCA9 Nonsense_Mutation p.R262* 0.40 TCGA-CM-5861-01 17 7012118 7012118 C T ASGR2 Missense_Mutation p.V72M 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-CM-5861-01 17 71248855 71248855 C T CPSF4L Silent p.L137L 0.30 TCGA-CM-5861-01 17 72277999 72277999 G A DNAI2 Missense_Mutation p.G15R 0.42 deleterious(0) probably_damaging(0.985) TCGA-CM-5861-01 17 72306255 72306255 C T DNAI2 Missense_Mutation p.P483S 0.40 tolerated(0.94) benign(0.001) TCGA-CM-5861-01 17 73179029 73179029 G T SUMO2 5'UTR 0.25 TCGA-CM-5861-01 17 73262915 73262915 T C MIF4GD Missense_Mutation p.Q233R 0.37 tolerated(1) benign(0.009) TCGA-CM-5861-01 17 73487858 73487858 C T KIAA0195 Silent p.G491G 0.39 TCGA-CM-5861-01 17 73559411 73559411 G A LLGL2 Splice_Site p.X232_splice 0.43 TCGA-CM-5861-01 17 73569139 73569139 G T LLGL2 Silent p.L835L 0.33 TCGA-CM-5861-01 17 74005079 74005079 G A EVPL Missense_Mutation p.R1403C 0.29 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 17 7464296 7464296 T A TNFSF12-TNFSF13 3'UTR 0.36 TCGA-CM-5861-01 17 74868822 74868822 T C MGAT5B 5'UTR 0.35 TCGA-CM-5861-01 17 7507370 7507370 G T FXR2 Missense_Mutation p.P86H 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-CM-5861-01 17 7559174 7559174 C T ATP1B2 Silent p.A278A 0.39 TCGA-CM-5861-01 17 7611406 7611406 G - EFNB3 Frame_Shift_Del p.G86Vfs*72 0.38 TCGA-CM-5861-01 17 76183475 76183475 T C AFMID Silent p.G8G 0.30 TCGA-CM-5861-01 17 76400034 76400034 G T PGS1 Missense_Mutation p.K422N 0.26 deleterious(0) benign(0.126) TCGA-CM-5861-01 17 76481803 76481803 G A DNAH17 Missense_Mutation p.R2424C 0.43 benign(0.047) TCGA-CM-5861-01 17 76498763 76498763 G T DNAH17 Intron 0.37 TCGA-CM-5861-01 17 76672013 76672013 C T CYTH1 3'UTR 0.31 TCGA-CM-5861-01 17 76887227 76887227 C A DDC8 Missense_Mutation p.E453D 0.36 tolerated(0.16) benign(0.205) TCGA-CM-5861-01 17 77705081 77705081 C T ENPP7 Silent p.D60D 0.22 TCGA-CM-5861-01 17 78084551 78084551 C T GAA Missense_Mutation p.P488L 0.36 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 17 78268639 78268639 C T RNF213 Missense_Mutation p.A531V 0.39 benign(0.001) TCGA-CM-5861-01 17 7843518 7843519 GA - CNTROB Frame_Shift_Del p.D427Cfs*14 0.25 TCGA-CM-5861-01 17 79097097 79097097 G A AATK Missense_Mutation p.P337S 0.28 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 17 79409160 79409160 G A RP11-1055B8.7 Missense_Mutation p.C262Y 0.62 probably_damaging(0.996) TCGA-CM-5861-01 17 79409725 79409725 C T RP11-1055B8.7 Silent p.G450G 0.17 TCGA-CM-5861-01 17 79411838 79411838 C - RP11-1055B8.7 Frame_Shift_Del p.H888Tfs*86 0.27 TCGA-CM-5861-01 17 79496182 79496182 T G FSCN2 Missense_Mutation p.C209G 0.36 tolerated(0.51) benign(0.002) TCGA-CM-5861-01 17 79612317 79612317 G - TSPAN10 Frame_Shift_Del p.L116Cfs*19 0.12 TCGA-CM-5861-01 17 79648806 79648806 C T ARL16 Missense_Mutation p.A176T 0.37 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 17 79668619 79668619 A G HGS Missense_Mutation p.S769G 0.33 tolerated_low_confidence(0.1) benign(0.021) TCGA-CM-5861-01 17 79871702 79871702 C T SIRT7 Missense_Mutation p.V318I 0.28 deleterious(0.03) possibly_damaging(0.652) TCGA-CM-5861-01 17 79898918 79898918 A G MYADML2 Missense_Mutation p.Y234H 0.19 tolerated(0.07) benign(0.208) TCGA-CM-5861-01 17 79914541 79914541 A G NOTUM Missense_Mutation p.Y325H 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-CM-5861-01 17 79982877 79982877 C A LRRC45 Missense_Mutation p.L119I 0.21 deleterious(0.05) benign(0.194) TCGA-CM-5861-01 17 80046431 80046431 C T FASN Missense_Mutation p.A810T 0.50 tolerated(0.13) benign(0.013) TCGA-CM-5861-01 17 80151862 80151862 C T CCDC57 Missense_Mutation p.A258T 0.25 deleterious(0) probably_damaging(0.994) TCGA-CM-5861-01 17 80206876 80206876 G - CSNK1D Frame_Shift_Del p.R358Gfs*12 0.23 TCGA-CM-5861-01 17 80210920 80210920 G A CSNK1D Silent p.Y179Y 0.34 TCGA-CM-5861-01 17 80282737 80282737 C A SECTM1 Missense_Mutation p.V42L 0.38 deleterious(0.04) possibly_damaging(0.866) TCGA-CM-5861-01 17 8045759 8045759 G T PER1 Missense_Mutation p.H1093N 0.43 tolerated(0.73) probably_damaging(0.932) TCGA-CM-5861-01 17 8077711 8077711 A - TMEM107 Intron 0.17 TCGA-CM-5861-01 17 8222137 8222138 - G ARHGEF15 Frame_Shift_Ins p.V651Rfs*18 0.37 TCGA-CM-5861-01 17 8661646 8661646 T C SPDYE4 Missense_Mutation p.T19A 0.27 tolerated(0.15) benign(0.217) TCGA-CM-5861-01 17 8726747 8726747 C T PIK3R6 Missense_Mutation p.R528H 0.41 deleterious(0.02) probably_damaging(0.991) TCGA-CM-5861-01 17 9631289 9631289 G A USP43 Missense_Mutation p.R785H 0.15 deleterious(0) benign(0.255) TCGA-CM-5861-01 17 9801318 9801318 C T RCVRN 3'UTR 0.40 TCGA-CM-5861-01 18 12463379 12463379 G A SPIRE1 Missense_Mutation p.P537S 0.37 tolerated(0.19) possibly_damaging(0.841) TCGA-CM-5861-01 18 14831401 14831401 A G ANKRD30B Missense_Mutation p.T813A 0.37 tolerated_low_confidence(0.59) benign(0.045) TCGA-CM-5861-01 18 18619521 18619521 T A ROCK1 Missense_Mutation p.E321D 0.29 tolerated(0.2) benign(0.007) TCGA-CM-5861-01 18 18629104 18629105 - A ROCK1 Frame_Shift_Ins p.W122Lfs*25 0.28 TCGA-CM-5861-01 18 21098916 21098916 C T C18orf8 Missense_Mutation p.A239V 0.35 deleterious(0.02) benign(0.167) TCGA-CM-5861-01 18 23713850 23713850 C T PSMA8 5'UTR 0.40 TCGA-CM-5861-01 18 23865900 23865900 C T TAF4B Nonsense_Mutation p.Q343* 0.10 TCGA-CM-5861-01 18 24126775 24126775 G - KCTD1 Intron 0.35 TCGA-CM-5861-01 18 25573485 25573485 A G CDH2 Silent p.P379P 0.33 TCGA-CM-5861-01 18 2724949 2724949 C T SMCHD1 Nonsense_Mutation p.R886* 0.36 TCGA-CM-5861-01 18 2750433 2750433 C A SMCHD1 Missense_Mutation p.P1365T 0.20 deleterious(0.01) benign(0.164) TCGA-CM-5861-01 18 28723750 28723750 C T DSC1 Missense_Mutation p.C315Y 0.32 tolerated(0.18) probably_damaging(0.998) TCGA-CM-5861-01 18 29225342 29225342 T C B4GALT6 Silent p.P149P 0.17 TCGA-CM-5861-01 18 29598984 29598984 G A RNF125 Missense_Mutation p.G53D 0.39 deleterious(0) possibly_damaging(0.877) TCGA-CM-5861-01 18 29706750 29706750 A G RNF138 Missense_Mutation p.Y219C 0.12 deleterious(0) probably_damaging(0.99) TCGA-CM-5861-01 18 31709843 31709843 A G NOL4 Missense_Mutation p.Y136H 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-CM-5861-01 18 42530931 42530931 G A SETBP1 Missense_Mutation p.M542I 0.31 tolerated(0.7) benign(0.001) TCGA-CM-5861-01 18 42533045 42533045 A - SETBP1 Frame_Shift_Del p.G1249Efs*3 0.26 TCGA-CM-5861-01 18 43619955 43619955 C T PSTPIP2 Missense_Mutation p.G31D 0.36 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 18 50866235 50866235 C T DCC Missense_Mutation p.R773C 0.41 deleterious(0) probably_damaging(0.994) TCGA-CM-5861-01 18 5291331 5291331 C T ZBTB14 Silent p.L292L 0.11 TCGA-CM-5861-01 18 56246924 56246924 C T ALPK2 Missense_Mutation p.E362K 0.35 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 18 56246940 56246941 - A ALPK2 Frame_Shift_Ins p.L356Ffs*6 0.37 TCGA-CM-5861-01 18 65182022 65182022 A C DSEL 5'UTR 0.35 TCGA-CM-5861-01 18 66348274 66348274 T C TMX3 Missense_Mutation p.K327E 0.20 tolerated(1) benign(0.001) TCGA-CM-5861-01 18 670769 670769 C T TYMS Silent p.L212L 0.34 TCGA-CM-5861-01 18 67992804 67992804 G A SOCS6 Silent p.P300P 0.31 TCGA-CM-5861-01 18 67996621 67996621 A C SOCS6 3'UTR 0.35 TCGA-CM-5861-01 18 6890035 6890035 C T ARHGAP28 Missense_Mutation p.A403V 0.42 deleterious(0) possibly_damaging(0.506) TCGA-CM-5861-01 18 70209175 70209175 G A CBLN2 Missense_Mutation p.A74V 0.20 deleterious(0.04) benign(0.007) TCGA-CM-5861-01 18 72344537 72344537 C T ZNF407 Missense_Mutation p.A521V 0.33 tolerated(0.09) benign(0.113) TCGA-CM-5861-01 18 72346184 72346184 A G ZNF407 Missense_Mutation p.H1070R 0.33 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 18 724568 724568 G T YES1 Silent p.G496G 0.33 TCGA-CM-5861-01 18 77728149 77728149 A G HSBP1L1 Missense_Mutation p.Q60R 0.35 deleterious(0.01) benign(0.025) TCGA-CM-5861-01 19 10085036 10085036 G T COL5A3 Missense_Mutation p.Q1131K 0.33 possibly_damaging(0.904) TCGA-CM-5861-01 19 10254635 10254635 G A DNMT1 Missense_Mutation p.P975S 0.38 tolerated(0.36) benign(0.008) TCGA-CM-5861-01 19 10506734 10506734 C T CDC37 Missense_Mutation p.R83H 0.46 tolerated(0.08) probably_damaging(0.956) TCGA-CM-5861-01 19 10789839 10789839 G A ILF3 Missense_Mutation p.V240M 0.35 deleterious(0) probably_damaging(0.992) TCGA-CM-5861-01 19 11489155 11489155 T C EPOR Silent p.A344A 0.28 TCGA-CM-5861-01 19 11527668 11527668 T C RGL3 Silent p.A71A 0.31 TCGA-CM-5861-01 19 11916898 11916898 G A ZNF491 Missense_Mutation p.E44K 0.22 tolerated(1) benign(0.005) TCGA-CM-5861-01 19 12090025 12090025 A - ZNF763 3'UTR 0.25 TCGA-CM-5861-01 19 1230858 1230858 G A C19orf26 3'UTR 0.26 TCGA-CM-5861-01 19 12739502 12739502 A - ZNF791 Frame_Shift_Del p.K388Nfs*10 0.27 TCGA-CM-5861-01 19 12945982 12945983 - A RTBDN 5'UTR 0.29 TCGA-CM-5861-01 19 13035272 13035272 A G FARSA Missense_Mutation p.Y422H 0.32 deleterious(0) probably_damaging(0.992) TCGA-CM-5861-01 19 13050931 13050931 C T CALR Silent p.N154N 0.32 TCGA-CM-5861-01 19 13054524 13054524 C T CALR Intron 0.42 TCGA-CM-5861-01 19 13056783 13056783 C T RAD23A Silent p.L7L 0.19 TCGA-CM-5861-01 19 13988322 13988322 G T NANOS3 Missense_Mutation p.R87L 0.38 deleterious(0) probably_damaging(0.94) TCGA-CM-5861-01 19 14273794 14273794 C A LPHN1 Missense_Mutation p.W278C 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 19 14591138 14591138 T C GIPC1 Missense_Mutation p.T212A 0.39 deleterious(0) benign(0.197) TCGA-CM-5861-01 19 15198126 15198126 A G OR1I1 Missense_Mutation p.N84D 0.16 deleterious(0.03) benign(0.101) TCGA-CM-5861-01 19 15366897 15366897 T C BRD4 Missense_Mutation p.N577D 0.34 benign(0.292) TCGA-CM-5861-01 19 1556852 1556852 C T MEX3D Silent p.P222P 0.42 TCGA-CM-5861-01 19 15784520 15784520 T G CYP4F12 Missense_Mutation p.W61G 0.39 deleterious(0.04) benign(0.158) TCGA-CM-5861-01 19 15905218 15905218 C T OR10H5 Silent p.Y120Y 0.46 TCGA-CM-5861-01 19 16614053 16614053 T C C19orf44 Missense_Mutation p.S313P 0.21 tolerated(0.12) benign(0.397) TCGA-CM-5861-01 19 16631600 16631600 C A C19orf44 3'UTR 0.17 TCGA-CM-5861-01 19 17337840 17337840 C - OCEL1 Frame_Shift_Del p.R97Afs*60 0.33 TCGA-CM-5861-01 19 18254618 18254618 G A MAST3 Silent p.S766S 0.35 TCGA-CM-5861-01 19 18344127 18344127 C T PDE4C 5'UTR 0.44 TCGA-CM-5861-01 19 19454717 19454717 G A MAU2 Missense_Mutation p.V349I 0.44 tolerated(0.37) benign(0.309) TCGA-CM-5861-01 19 19454737 19454737 G T MAU2 Silent p.T355T 0.50 TCGA-CM-5861-01 19 19656444 19656444 C T CILP2 Silent p.Y1030Y 0.38 TCGA-CM-5861-01 19 1990741 1990741 C T BTBD2 Silent p.A255A 0.13 TCGA-CM-5861-01 19 20117931 20117931 T G ZNF682 Missense_Mutation p.K127T 0.33 deleterious(0.02) benign(0.002) TCGA-CM-5861-01 19 2115371 2115371 C T AP3D1 Silent p.R732R 0.39 TCGA-CM-5861-01 19 21934442 21934442 G A ZNF100 Intron 0.33 TCGA-CM-5861-01 19 23405425 23405425 T C ZNF724P Missense_Mutation p.K541R 0.22 deleterious(0.02) probably_damaging(0.968) TCGA-CM-5861-01 19 2408528 2408528 C T TMPRSS9 Silent p.G305G 0.41 TCGA-CM-5861-01 19 30020812 30020812 C T VSTM2B Silent p.R128R 0.41 TCGA-CM-5861-01 19 30935391 30935391 G A ZNF536 Missense_Mutation p.A308T 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5861-01 19 31048271 31048271 A - ZNF536 3'UTR 0.31 TCGA-CM-5861-01 19 34699874 34699874 C T LSM14A Silent p.N152N 0.17 TCGA-CM-5861-01 19 35422769 35422769 A G ZNF30 Missense_Mutation p.H11R 0.31 deleterious(0.04) benign(0.003) TCGA-CM-5861-01 19 35550829 35550829 G A HPN Silent p.T114T 0.17 TCGA-CM-5861-01 19 35655018 35655018 T C FXYD5 Intron 0.16 TCGA-CM-5861-01 19 35752862 35752862 T - LSR Frame_Shift_Del p.Q253Rfs*5 0.30 TCGA-CM-5861-01 19 35801001 35801001 G A MAG Missense_Mutation p.V486I 0.34 tolerated(0.4) benign(0.033) TCGA-CM-5861-01 19 36219044 36219044 T C KMT2B Missense_Mutation p.Y1515H 0.30 probably_damaging(0.969) TCGA-CM-5861-01 19 36228146 36228146 G A KMT2B Missense_Mutation p.R2511Q 0.44 possibly_damaging(0.786) TCGA-CM-5861-01 19 36278496 36278496 G A ARHGAP33 Missense_Mutation p.R849K 0.48 deleterious_low_confidence(0.03) probably_damaging(0.91) TCGA-CM-5861-01 19 36339609 36339609 C T NPHS1 Missense_Mutation p.R367H 0.35 tolerated(0.12) benign(0.313) TCGA-CM-5861-01 19 36431112 36431112 G A LRFN3 Missense_Mutation p.R262H 0.55 deleterious(0.02) probably_damaging(0.985) TCGA-CM-5861-01 19 36497465 36497465 T C SYNE4 Missense_Mutation p.T243A 0.34 tolerated(0.07) possibly_damaging(0.899) TCGA-CM-5861-01 19 37004832 37004832 T C ZNF260 3'UTR 0.11 TCGA-CM-5861-01 19 37130866 37130866 G A ZNF461 Silent p.N127N 0.40 TCGA-CM-5861-01 19 37210234 37210234 C T ZNF567 Missense_Mutation p.T172M 0.34 tolerated(0.31) benign(0.001) TCGA-CM-5861-01 19 3738920 3738920 C T TJP3 Silent p.R482R 0.33 TCGA-CM-5861-01 19 38056739 38056739 A G ZNF571 Silent p.C197C 0.14 TCGA-CM-5861-01 19 38903580 38903580 G - RASGRP4 Frame_Shift_Del p.P509Hfs*13 0.29 TCGA-CM-5861-01 19 38976471 38976471 C T RYR1 Missense_Mutation p.R1726C 0.59 benign(0.269) TCGA-CM-5861-01 19 39406723 39406723 T C SARS2 Missense_Mutation p.H436R 0.37 tolerated(0.13) benign(0.012) TCGA-CM-5861-01 19 39668359 39668359 C T PAK4 Silent p.D510D 0.40 TCGA-CM-5861-01 19 40886474 40886474 A G HIPK4 Missense_Mutation p.L475P 0.32 tolerated_low_confidence(0.1) probably_damaging(0.949) TCGA-CM-5861-01 19 4164564 4164564 T C CREB3L3 Missense_Mutation p.V214A 0.43 deleterious(0.02) benign(0.091) TCGA-CM-5861-01 19 41850733 41850733 G A TGFB1 Missense_Mutation p.R185W 0.35 deleterious(0) probably_damaging(0.994) TCGA-CM-5861-01 19 42561094 42561094 A G GRIK5 Missense_Mutation p.Y242H 0.38 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 19 42563536 42563536 C T GRIK5 Missense_Mutation p.A218T 0.09 tolerated(0.17) possibly_damaging(0.64) TCGA-CM-5861-01 19 42626708 42626708 G T POU2F2 Missense_Mutation p.L17M 0.36 tolerated(0.17) probably_damaging(0.993) TCGA-CM-5861-01 19 42730604 42730604 C T ZNF526 3'UTR 0.45 TCGA-CM-5861-01 19 42797748 42797748 G A CIC Missense_Mutation p.S1267N 0.35 benign(0.038) TCGA-CM-5861-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.25 TCGA-CM-5861-01 19 4328804 4328804 C T STAP2 Missense_Mutation p.C153Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 19 44010952 44010952 C A ETHE1 3'UTR 0.39 TCGA-CM-5861-01 19 44056177 44056177 C T XRCC1 Silent p.T358T 0.21 TCGA-CM-5861-01 19 4433118 4433118 T C CHAF1A Missense_Mutation p.V752A 0.17 tolerated(0.18) benign(0.145) TCGA-CM-5861-01 19 44831527 44831527 T A ZNF112 3'UTR 0.18 TCGA-CM-5861-01 19 44934513 44934513 G A ZNF229 Missense_Mutation p.T148M 0.36 deleterious(0.04) possibly_damaging(0.551) TCGA-CM-5861-01 19 4498825 4498825 C T HDGFRP2 Silent p.C496C 0.53 TCGA-CM-5861-01 19 45375197 45375197 G A PVRL2 Missense_Mutation p.R189H 0.12 tolerated(0.08) possibly_damaging(0.733) TCGA-CM-5861-01 19 45381541 45381541 A G PVRL2 Intron 0.42 TCGA-CM-5861-01 19 45541055 45541055 G A RELB 3'UTR 0.50 TCGA-CM-5861-01 19 45862131 45862132 - T ERCC2 Intron 0.28 TCGA-CM-5861-01 19 45971826 45971826 C - FOSB 5'UTR 0.14 TCGA-CM-5861-01 19 45997954 45997954 G A RTN2 Missense_Mutation p.A130V 0.50 tolerated_low_confidence(0.53) benign(0.12) TCGA-CM-5861-01 19 46129994 46129994 C - EML2 Frame_Shift_Del p.G438Afs*3 0.35 TCGA-CM-5861-01 19 46215746 46215746 A G FBXO46 Silent p.G336G 0.53 TCGA-CM-5861-01 19 46521595 46521595 C T CCDC61 Missense_Mutation p.R497C 0.42 deleterious(0) probably_damaging(0.942) TCGA-CM-5861-01 19 46808582 46808582 C T HIF3A Missense_Mutation p.L100F 0.12 deleterious(0) probably_damaging(0.996) TCGA-CM-5861-01 19 46916689 46916689 A G CCDC8 5'UTR 0.35 TCGA-CM-5861-01 19 47879248 47879248 T C DHX34 Missense_Mutation p.L792P 0.29 tolerated(0.16) probably_damaging(0.991) TCGA-CM-5861-01 19 4794915 4794915 C T FEM1A 3'UTR 0.31 TCGA-CM-5861-01 19 47960782 47960782 G A SLC8A2 Missense_Mutation p.R249W 0.44 deleterious(0) possibly_damaging(0.855) TCGA-CM-5861-01 19 48041464 48041464 T C ZNF541 Missense_Mutation p.Y1029C 0.30 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 19 4839212 4839212 T C PLIN3 Missense_Mutation p.K433E 0.30 tolerated(0.13) benign(0.018) TCGA-CM-5861-01 19 48790269 48790269 A - ZNF114 3'UTR 0.33 TCGA-CM-5861-01 19 48833711 48833711 T C EMP3 Missense_Mutation p.L159P 0.28 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 19 49131553 49131553 G A SPHK2 Intron 0.16 TCGA-CM-5861-01 19 49132630 49132630 C T SPHK2 Missense_Mutation p.P522L 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-CM-5861-01 19 49167998 49167998 G A NTN5 Missense_Mutation p.R220C 0.39 deleterious(0) probably_damaging(0.946) TCGA-CM-5861-01 19 49217285 49217285 T C MAMSTR Silent p.A247A 0.32 TCGA-CM-5861-01 19 49391267 49391267 G A TULP2 Silent p.G296G 0.30 TCGA-CM-5861-01 19 49464878 49464880 GAA - BAX 3'UTR 0.28 TCGA-CM-5861-01 19 49539051 49539051 T C CGB1 Missense_Mutation p.N95S 0.26 deleterious(0) benign(0.291) TCGA-CM-5861-01 19 49632182 49632182 C A PPFIA3 Silent p.A140A 0.34 TCGA-CM-5861-01 19 49658549 49658549 G A HRC 5'UTR 0.70 TCGA-CM-5861-01 19 50001265 50001265 C T RPS11 Silent p.R105R 0.12 TCGA-CM-5861-01 19 50119437 50119437 T C PRR12 Missense_Mutation p.S1820P 0.37 unknown(0) TCGA-CM-5861-01 19 50243088 50243088 C - TSKS Frame_Shift_Del p.G575Efs*? 0.29 TCGA-CM-5861-01 19 50861882 50861882 G A NAPSA Silent p.G397G 0.20 TCGA-CM-5861-01 19 50881536 50881536 C T NR1H2 Silent p.C104C 0.22 TCGA-CM-5861-01 19 50882308 50882308 G A NR1H2 Missense_Mutation p.R266H 0.14 tolerated(0.07) probably_damaging(0.985) TCGA-CM-5861-01 19 50905895 50905895 C T POLD1 Silent p.D289D 0.46 TCGA-CM-5861-01 19 50919866 50919866 G - POLD1 Splice_Site p.X987_splice 0.36 TCGA-CM-5861-01 19 50958804 50958804 T C MYBPC2 Silent p.D747D 0.31 TCGA-CM-5861-01 19 51128662 51128662 A G SYT3 Missense_Mutation p.V521A 0.31 deleterious(0.01) benign(0.368) TCGA-CM-5861-01 19 51165654 51165654 C T SHANK1 Silent p.S2018S 0.38 TCGA-CM-5861-01 19 51165923 51165923 G T SHANK1 Missense_Mutation p.Q1929K 0.29 unknown(0) TCGA-CM-5861-01 19 52031032 52031032 T C SIGLEC6 Missense_Mutation p.D386G 0.36 tolerated(0.09) benign(0.021) TCGA-CM-5861-01 19 52196103 52196103 C T MIRLET7E RNA 0.22 TCGA-CM-5861-01 19 52327392 52327392 G A FPR3 Missense_Mutation p.A131T 0.21 deleterious(0) benign(0.158) TCGA-CM-5861-01 19 52887802 52887802 T C ZNF880 Silent p.P323P 0.35 TCGA-CM-5861-01 19 53086002 53086002 A - ZNF701 Frame_Shift_Del p.K298Nfs*4 0.26 TCGA-CM-5861-01 19 53343878 53343878 C T ZNF468 3'UTR 0.36 TCGA-CM-5861-01 19 54668263 54668263 A G TMC4 Silent p.L346L 0.44 TCGA-CM-5861-01 19 54695138 54695138 A G TSEN34 Intron 0.22 TCGA-CM-5861-01 19 54744422 54744422 G A LILRA6 Missense_Mutation p.A329V 0.22 tolerated(1) benign(0.002) TCGA-CM-5861-01 19 54782964 54782964 C A LILRB2 Splice_Site p.X220_splice 0.24 TCGA-CM-5861-01 19 54822711 54822711 T G LILRA5 Missense_Mutation p.S229R 0.29 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 19 55147746 55147746 G A AC009892.10 Intron 0.44 TCGA-CM-5861-01 19 55741762 55741762 G T PPP6R1 3'UTR 0.38 TCGA-CM-5861-01 19 55877466 55877466 C - IL11 Frame_Shift_Del p.G170Afs*14 0.32 TCGA-CM-5861-01 19 55997895 55997895 G C NAT14 Missense_Mutation p.A65P 0.48 deleterious(0.01) probably_damaging(0.981) TCGA-CM-5861-01 19 56000786 56000786 C T SSC5D Missense_Mutation p.R40C 0.21 probably_damaging(0.999) TCGA-CM-5861-01 19 56206633 56206633 T C EPN1 Missense_Mutation p.Y634H 0.10 tolerated(0.28) probably_damaging(0.952) TCGA-CM-5861-01 19 56423954 56423954 T C NLRP13 Missense_Mutation p.Q410R 0.30 tolerated(0.97) benign(0.002) TCGA-CM-5861-01 19 56969550 56969550 T C ZNF667 Missense_Mutation p.E76G 0.36 deleterious(0) benign(0.034) TCGA-CM-5861-01 19 56972102 56972102 T C ZNF667 Missense_Mutation p.Y39C 0.37 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 19 57065815 57065815 T C ZFP28 Missense_Mutation p.I554T 0.39 deleterious(0.04) probably_damaging(0.995) TCGA-CM-5861-01 19 57175145 57175145 G A ZNF835 Silent p.Y474Y 0.14 TCGA-CM-5861-01 19 57672141 57672141 C T DUXA Missense_Mutation p.R17H 0.34 deleterious(0) probably_damaging(0.991) TCGA-CM-5861-01 19 57792059 57792059 G A ZNF460 5'UTR 0.40 TCGA-CM-5861-01 19 58118243 58118243 C G ZNF530 Silent p.L450L 0.34 TCGA-CM-5861-01 19 58232780 58232780 C T ZNF671 Missense_Mutation p.G225D 0.17 tolerated(0.32) benign(0.001) TCGA-CM-5861-01 19 58453910 58453910 G A ZNF256 Missense_Mutation p.T89I 0.36 tolerated(0.13) benign(0.15) TCGA-CM-5861-01 19 58489676 58489676 A G ZNF606 Missense_Mutation p.L791P 0.24 tolerated_low_confidence(0.09) possibly_damaging(0.671) TCGA-CM-5861-01 19 58879185 58879185 G A ZNF837 Silent p.C505C 0.38 TCGA-CM-5861-01 19 58945449 58945449 G A ZNF132 Silent p.T454T 0.40 TCGA-CM-5861-01 19 59012709 59012709 C T SLC27A5 Missense_Mutation p.V376M 0.40 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 19 6442099 6442099 G A SLC25A23 Missense_Mutation p.R432W 0.42 tolerated(0.19) benign(0) TCGA-CM-5861-01 19 6754233 6754233 G A SH2D3A Intron 0.19 TCGA-CM-5861-01 19 7570262 7570262 G - C19orf45 Frame_Shift_Del p.G279Vfs*36 0.40 TCGA-CM-5861-01 19 7584233 7584233 T C ZNF358 Silent p.D35D 0.26 TCGA-CM-5861-01 19 7691072 7691072 C T XAB2 Missense_Mutation p.V203M 0.32 deleterious(0.02) possibly_damaging(0.479) TCGA-CM-5861-01 19 7794388 7794388 T A CLEC4G Missense_Mutation p.H249L 0.29 deleterious(0.02) possibly_damaging(0.791) TCGA-CM-5861-01 19 7926877 7926877 G A EVI5L Silent p.Q539Q 0.32 TCGA-CM-5861-01 19 8369997 8369997 G A CD320 Silent p.R62R 0.35 TCGA-CM-5861-01 19 855753 855753 G A ELANE Missense_Mutation p.V186I 0.18 tolerated(0.24) benign(0.026) TCGA-CM-5861-01 19 880022 880022 C T MED16 Missense_Mutation p.R423H 0.26 deleterious(0) possibly_damaging(0.766) TCGA-CM-5861-01 19 9014654 9014654 C T MUC16 Missense_Mutation p.R12774H 0.44 benign(0.233) TCGA-CM-5861-01 19 9069886 9069886 T A MUC16 Missense_Mutation p.T5854S 0.31 unknown(0) TCGA-CM-5861-01 19 9965508 9965508 C T OLFM2 Missense_Mutation p.R240H 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-CM-5861-01 1 100672047 100672047 G A DBT Missense_Mutation p.T388I 0.41 tolerated(0.19) benign(0.088) TCGA-CM-5861-01 1 100696450 100696450 G A DBT Missense_Mutation p.T91I 0.39 tolerated(0.12) benign(0.094) TCGA-CM-5861-01 1 101005848 101005848 C T GPR88 3'UTR 0.33 TCGA-CM-5861-01 1 101197007 101197007 G A VCAM1 Silent p.K486K 0.24 TCGA-CM-5861-01 1 102462322 102462322 G A OLFM3 Silent p.A17A 0.36 TCGA-CM-5861-01 1 107599480 107599480 A G PRMT6 Missense_Mutation p.Y48C 0.25 deleterious(0) probably_damaging(0.912) TCGA-CM-5861-01 1 109265111 109265111 C T FNDC7 Silent p.C251C 0.38 TCGA-CM-5861-01 1 109322029 109322029 A G STXBP3 Missense_Mutation p.Y269C 0.39 deleterious(0.02) probably_damaging(0.995) TCGA-CM-5861-01 1 109440620 109440620 T C GPSM2 Missense_Mutation p.Y152H 0.25 tolerated(0.06) possibly_damaging(0.801) TCGA-CM-5861-01 1 109649643 109649643 C T C1orf194 Silent p.T88T 0.35 TCGA-CM-5861-01 1 110038810 110038810 G A CYB561D1 Missense_Mutation p.V229I 0.16 tolerated(0.25) benign(0.002) TCGA-CM-5861-01 1 110121985 110121985 T C GNAI3 Splice_Site p.X154_splice 0.42 TCGA-CM-5861-01 1 110231875 110231875 T G GSTM1 Silent p.R96R 0.43 TCGA-CM-5861-01 1 110259994 110259994 C G GSTM5 Missense_Mutation p.S201R 0.37 deleterious(0.01) benign(0.439) TCGA-CM-5861-01 1 110584196 110584196 T C STRIP1 Missense_Mutation p.V230A 0.34 tolerated(0.08) benign(0.142) TCGA-CM-5861-01 1 11087030 11087030 A G MASP2 Missense_Mutation p.M658T 0.12 tolerated(0.4) benign(0) TCGA-CM-5861-01 1 110998977 110998977 C A PROK1 3'UTR 0.24 TCGA-CM-5861-01 1 111217026 111217026 G A KCNA3 Missense_Mutation p.R136C 0.33 deleterious(0.01) probably_damaging(1) TCGA-CM-5861-01 1 1120493 1120493 C T TTLL10 Intron 0.27 TCGA-CM-5861-01 1 113062911 113062911 G A WNT2B Missense_Mutation p.G319D 0.21 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 1 114157265 114157265 G A MAGI3 Missense_Mutation p.G354E 0.33 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 1 11574523 11574523 C A PTCHD2 Missense_Mutation p.L465M 0.33 tolerated(0.07) probably_damaging(1) TCGA-CM-5861-01 1 116226627 116226627 G A VANGL1 Missense_Mutation p.D337N 0.22 tolerated(0.06) benign(0.328) TCGA-CM-5861-01 1 1170391 1170391 C T B3GALT6 3'UTR 0.36 TCGA-CM-5861-01 1 117078662 117078662 T - CD58 Frame_Shift_Del p.I185Yfs*18 0.22 TCGA-CM-5861-01 1 11733336 11733336 T C FBXO6 Missense_Mutation p.F171S 0.26 deleterious(0) possibly_damaging(0.821) TCGA-CM-5861-01 1 118506529 118506529 G A SPAG17 Missense_Mutation p.P2189S 0.07 tolerated(0.09) benign(0.111) TCGA-CM-5861-01 1 120049947 120049947 A - HSD3B1 Intron 0.52 TCGA-CM-5861-01 1 120166031 120166031 G A ZNF697 Missense_Mutation p.T312M 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-CM-5861-01 1 120906374 120906374 C T RP11-439A17.4 5'Flank 0.33 TCGA-CM-5861-01 1 1219446 1219446 C A SCNN1D Missense_Mutation p.P147Q 0.42 deleterious_low_confidence(0) benign(0.23) TCGA-CM-5861-01 1 1274744 1274744 T C DVL1 Missense_Mutation p.Y377C 0.31 deleterious(0.01) benign(0.014) TCGA-CM-5861-01 1 14107152 14107152 C A PRDM2 Silent p.P954P 0.23 TCGA-CM-5861-01 1 144874029 144874029 T C PDE4DIP Missense_Mutation p.D1643G 0.14 deleterious(0.04) possibly_damaging(0.7) TCGA-CM-5861-01 1 144881519 144881519 C T PDE4DIP Missense_Mutation p.R1226H 0.12 tolerated(0.13) benign(0.026) TCGA-CM-5861-01 1 145281663 145281663 G T NOTCH2NL Missense_Mutation p.R198L 0.07 deleterious(0.03) possibly_damaging(0.724) TCGA-CM-5861-01 1 145532152 145532152 G A ITGA10 Missense_Mutation p.E266K 0.16 deleterious(0.01) benign(0.384) TCGA-CM-5861-01 1 145561819 145561819 T C ANKRD35 Missense_Mutation p.W503R 0.15 deleterious(0) possibly_damaging(0.608) TCGA-CM-5861-01 1 147091500 147091501 - C BCL9 Frame_Shift_Ins p.P517Sfs*7 0.46 TCGA-CM-5861-01 1 147380449 147380449 G A GJA8 Missense_Mutation p.G123S 0.23 tolerated(0.41) benign(0.003) TCGA-CM-5861-01 1 149858753 149858753 A G HIST2H2AC Missense_Mutation p.T77A 0.20 deleterious_low_confidence(0.04) benign(0.006) TCGA-CM-5861-01 1 150297500 150297500 G A PRPF3 Missense_Mutation p.A34T 0.22 deleterious(0.03) probably_damaging(0.99) TCGA-CM-5861-01 1 150443647 150443647 G A RPRD2 Silent p.K741K 0.09 TCGA-CM-5861-01 1 150469093 150469093 C T TARS2 Missense_Mutation p.R304C 0.21 deleterious(0) probably_damaging(0.973) TCGA-CM-5861-01 1 150483918 150483918 C - ECM1 Intron 0.16 TCGA-CM-5861-01 1 150528749 150528749 G - ADAMTSL4 Frame_Shift_Del p.G496Afs*89 0.10 TCGA-CM-5861-01 1 151105178 151105178 C G SEMA6C Missense_Mutation p.A891P 0.16 tolerated_low_confidence(0.38) probably_damaging(0.917) TCGA-CM-5861-01 1 151378469 151378469 C A POGZ Missense_Mutation p.Q1014H 0.22 tolerated(0.1) probably_damaging(0.993) TCGA-CM-5861-01 1 151611566 151611566 C T SNX27 Missense_Mutation p.H172Y 0.15 tolerated(1) probably_damaging(0.995) TCGA-CM-5861-01 1 151861768 151861768 T C THEM4 Missense_Mutation p.Y123C 0.21 deleterious(0) probably_damaging(0.982) TCGA-CM-5861-01 1 152187621 152187621 G A HRNR Missense_Mutation p.H2162Y 0.05 unknown(0) TCGA-CM-5861-01 1 152484202 152484202 T C LCE5A Silent p.G64G 0.25 TCGA-CM-5861-01 1 152659328 152659328 C T LCE2B Silent p.C3C 0.21 TCGA-CM-5861-01 1 152659826 152659826 T G LCE2B 3'UTR 0.19 TCGA-CM-5861-01 1 153085150 153085150 C T SPRR2F Silent p.A20A 0.12 TCGA-CM-5861-01 1 153604133 153604133 C A S100A1 Intron 0.20 TCGA-CM-5861-01 1 153653162 153653162 C T NPR1 Missense_Mutation p.R303C 0.19 deleterious(0) possibly_damaging(0.853) TCGA-CM-5861-01 1 153932742 153932742 C T SLC39A1 Silent p.Q269Q 0.15 TCGA-CM-5861-01 1 154302889 154302889 C T ATP8B2 Missense_Mutation p.R50W 0.19 deleterious(0) benign(0.35) TCGA-CM-5861-01 1 154474228 154474228 C T SHE Missense_Mutation p.G92D 0.50 tolerated(0.55) benign(0.145) TCGA-CM-5861-01 1 154918378 154918378 A G PBXIP1 Missense_Mutation p.V591A 0.25 tolerated(0.06) possibly_damaging(0.743) TCGA-CM-5861-01 1 155154564 155154564 G A TRIM46 Missense_Mutation p.V609I 0.12 tolerated(0.08) probably_damaging(0.99) TCGA-CM-5861-01 1 155719886 155719886 C T GON4L 3'UTR 0.05 TCGA-CM-5861-01 1 156131159 156131159 T G SEMA4A Missense_Mutation p.L278R 0.11 deleterious(0) probably_damaging(0.961) TCGA-CM-5861-01 1 156244385 156244385 T C SMG5 Intron 0.20 TCGA-CM-5861-01 1 156262829 156262829 C T C1orf85 3'UTR 0.59 TCGA-CM-5861-01 1 156450650 156450650 G A MEF2D Silent p.L124L 0.09 TCGA-CM-5861-01 1 156713639 156713639 T G HDGF Missense_Mutation p.N190T 0.11 tolerated(0.15) benign(0.031) TCGA-CM-5861-01 1 156954218 156954218 G A ARHGEF11 Missense_Mutation p.R46C 0.68 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 1 157667624 157667624 A G FCRL3 Silent p.T128T 0.12 TCGA-CM-5861-01 1 157740438 157740438 G A FCRL2 Missense_Mutation p.A24V 0.29 tolerated(0.14) benign(0.106) TCGA-CM-5861-01 1 157804301 157804301 T A CD5L Missense_Mutation p.Q205L 0.14 tolerated(0.15) benign(0.166) TCGA-CM-5861-01 1 158300796 158300796 T C CD1B Missense_Mutation p.T40A 0.18 deleterious(0.01) benign(0.041) TCGA-CM-5861-01 1 158815771 158815771 A G MNDA Missense_Mutation p.Y322C 0.18 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 1 158906792 158906792 A G PYHIN1 Missense_Mutation p.N31S 0.21 tolerated(0.96) benign(0.01) TCGA-CM-5861-01 1 158906809 158906809 C A PYHIN1 Missense_Mutation p.P37T 0.19 tolerated(0.53) benign(0.029) TCGA-CM-5861-01 1 159021501 159021501 A C IFI16 Missense_Mutation p.E510D 0.22 tolerated(0.14) benign(0.242) TCGA-CM-5861-01 1 159284043 159284043 A C OR10J3 Missense_Mutation p.I136S 0.15 deleterious(0.01) benign(0.21) TCGA-CM-5861-01 1 159410024 159410024 C T OR10J1 Missense_Mutation p.A159V 0.20 tolerated(0.1) benign(0.07) TCGA-CM-5861-01 1 1597290 1597290 T A SLC35E2B Silent p.A383A 0.12 TCGA-CM-5861-01 1 159842288 159842288 G A CCDC19 Missense_Mutation p.T548I 0.08 tolerated(0.09) benign(0.101) TCGA-CM-5861-01 1 159890171 159890171 G A TAGLN2 Silent p.G43G 0.23 TCGA-CM-5861-01 1 159913306 159913306 G T IGSF9 5'UTR 0.59 TCGA-CM-5861-01 1 160012003 160012003 G T KCNJ10 Missense_Mutation p.P107H 0.07 deleterious(0) probably_damaging(0.995) TCGA-CM-5861-01 1 160054046 160054046 G A KCNJ9 Missense_Mutation p.G76S 0.64 deleterious(0.01) probably_damaging(1) TCGA-CM-5861-01 1 160144465 160144465 G A ATP1A4 Missense_Mutation p.V747I 0.61 deleterious(0.03) benign(0.09) TCGA-CM-5861-01 1 16103762 16103763 - A FBLIM1 3'Flank 0.29 TCGA-CM-5861-01 1 161161178 161161178 C A ADAMTS4 Missense_Mutation p.G755V 0.24 deleterious(0) probably_damaging(0.993) TCGA-CM-5861-01 1 161201119 161201119 C A NR1I3 Missense_Mutation p.V232L 0.11 tolerated_low_confidence(0.45) benign(0.001) TCGA-CM-5861-01 1 161726712 161726712 T C DUSP12 Missense_Mutation p.L333S 0.13 tolerated(0.21) benign(0.205) TCGA-CM-5861-01 1 163306559 163306559 G A NUF2 Missense_Mutation p.R119Q 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-CM-5861-01 1 16345987 16345987 G T HSPB7 5'Flank 0.10 TCGA-CM-5861-01 1 164761762 164761762 A G PBX1 Silent p.E99E 0.18 TCGA-CM-5861-01 1 167095038 167095038 A G DUSP27 Missense_Mutation p.S224G 0.58 tolerated(0.08) possibly_damaging(0.796) TCGA-CM-5861-01 1 168211980 168211980 A G SFT2D2 3'UTR 0.22 TCGA-CM-5861-01 1 169676522 169676522 T C SELL Missense_Mutation p.N194D 0.63 tolerated(0.39) benign(0.002) TCGA-CM-5861-01 1 171511004 171511004 G A PRRC2C Missense_Mutation p.A1465T 0.60 unknown(0) TCGA-CM-5861-01 1 171556246 171556246 T C PRRC2C Silent p.H2616H 0.07 TCGA-CM-5861-01 1 171621658 171621658 C - MYOC Frame_Shift_Del p.A32Pfs*52 0.26 TCGA-CM-5861-01 1 17248507 17248507 C - CROCC 5'UTR 0.29 TCGA-CM-5861-01 1 17285239 17285239 G A CROCC Silent p.R1342R 0.29 TCGA-CM-5861-01 1 173744969 173744969 A G KLHL20 Silent p.S542S 0.14 TCGA-CM-5861-01 1 175046683 175046683 C T TNN Silent p.S43S 0.20 TCGA-CM-5861-01 1 175087868 175087868 C T TNN Missense_Mutation p.T853M 0.70 deleterious(0.04) benign(0.292) TCGA-CM-5861-01 1 175335049 175335049 C T TNR Missense_Mutation p.R760Q 0.63 deleterious(0.02) probably_damaging(0.968) TCGA-CM-5861-01 1 176526315 176526315 C T PAPPA2 Missense_Mutation p.A286V 0.23 tolerated(0.2) benign(0.04) TCGA-CM-5861-01 1 17735409 17735409 A - RCC2 3'UTR 0.35 TCGA-CM-5861-01 1 178514519 178514519 G T C1orf220 Nonsense_Mutation p.G94* 0.18 TCGA-CM-5861-01 1 179084038 179084039 - G ABL2 Frame_Shift_Ins p.K513* 0.37 TCGA-CM-5861-01 1 179304740 179304740 G T SOAT1 Missense_Mutation p.A93S 0.18 tolerated(0.63) benign(0.01) TCGA-CM-5861-01 1 179544986 179544986 G A NPHS2 Missense_Mutation p.A5V 0.15 deleterious(0.03) unknown(0) TCGA-CM-5861-01 1 179816718 179816718 C T TOR1AIP2 Missense_Mutation p.A203T 0.21 tolerated(0.37) benign(0.013) TCGA-CM-5861-01 1 181690898 181690898 T G CACNA1E Missense_Mutation p.L654R 0.11 deleterious(0.01) probably_damaging(0.928) TCGA-CM-5861-01 1 181695254 181695254 C A CACNA1E Silent p.A732A 0.17 TCGA-CM-5861-01 1 182555279 182555279 A G RNASEL Silent p.I221I 0.13 TCGA-CM-5861-01 1 185259859 185259859 A G SWT1 Missense_Mutation p.Q876R 0.50 tolerated(0.08) benign(0.091) TCGA-CM-5861-01 1 185878614 185878614 C A HMCN1 Missense_Mutation p.P256Q 0.18 probably_damaging(0.987) TCGA-CM-5861-01 1 186114546 186114546 T C HMCN1 Missense_Mutation p.W4760R 0.24 probably_damaging(0.979) TCGA-CM-5861-01 1 186283850 186283850 C G TPR Missense_Mutation p.S2316T 0.23 possibly_damaging(0.481) TCGA-CM-5861-01 1 19473348 19473348 C T UBR4 Silent p.T2592T 0.38 TCGA-CM-5861-01 1 196946843 196946843 G - CFHR5 Frame_Shift_Del p.G18Efs*53 0.19 TCGA-CM-5861-01 1 197115359 197115359 G T ASPM Missense_Mutation p.P70H 0.08 deleterious(0) probably_damaging(0.969) TCGA-CM-5861-01 1 197411572 197411573 - A CRB1 Intron 0.45 TCGA-CM-5861-01 1 19983588 19983588 C - MINOS1-NBL1 Frame_Shift_Del p.H173Tfs*37 0.33 TCGA-CM-5861-01 1 20009480 20009481 AG - TMCO4 3'UTR 0.20 TCGA-CM-5861-01 1 200881002 200881002 T C C1orf106 Missense_Mutation p.Y461H 0.24 tolerated(0.06) possibly_damaging(0.45) TCGA-CM-5861-01 1 200967534 200967534 G A KIF21B Silent p.R685R 0.67 TCGA-CM-5861-01 1 200973959 200973959 G A KIF21B Missense_Mutation p.R279W 0.22 deleterious(0) possibly_damaging(0.865) TCGA-CM-5861-01 1 201342432 201342432 G - TNNT2 5'UTR 0.39 TCGA-CM-5861-01 1 202287249 202287249 C T LGR6 Silent p.G606G 0.26 TCGA-CM-5861-01 1 203014566 203014566 G A PPFIA4 Missense_Mutation p.R246Q 0.13 tolerated(0.22) benign(0.157) TCGA-CM-5861-01 1 203740044 203740044 A G LAX1 Missense_Mutation p.N60D 0.20 tolerated(0.05) benign(0.345) TCGA-CM-5861-01 1 204116068 204116068 C T ETNK2 Intron 0.07 TCGA-CM-5861-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.43 TCGA-CM-5861-01 1 204234135 204234135 G - PLEKHA6 Frame_Shift_Del p.L106Sfs*2 0.10 TCGA-CM-5861-01 1 204236637 204236637 G A PLEKHA6 Silent p.F82F 0.22 TCGA-CM-5861-01 1 206658346 206658346 G T IKBKE Silent p.V480V 0.07 TCGA-CM-5861-01 1 206822137 206822137 A G DYRK3 Missense_Mutation p.T532A 0.10 tolerated(0.83) benign(0) TCGA-CM-5861-01 1 207112486 207112486 A G PIGR Silent p.D122D 0.12 TCGA-CM-5861-01 1 207242775 207242775 T C PFKFB2 Missense_Mutation p.C332R 0.18 probably_damaging(1) TCGA-CM-5861-01 1 20879706 20879706 C T FAM43B Silent p.A80A 0.34 TCGA-CM-5861-01 1 20975120 20975120 C A PINK1 Missense_Mutation p.P416T 0.35 deleterious(0) probably_damaging(0.986) TCGA-CM-5861-01 1 209799179 209799179 A T LAMB3 Missense_Mutation p.L597Q 0.20 tolerated(0.19) benign(0.022) TCGA-CM-5861-01 1 20991149 20991149 C T KIF17 Silent p.E1006E 0.33 TCGA-CM-5861-01 1 21009284 21009284 G A KIF17 Silent p.D775D 0.33 TCGA-CM-5861-01 1 211462634 211462634 A G RCOR3 Missense_Mutation p.M279V 0.08 deleterious(0) probably_damaging(0.979) TCGA-CM-5861-01 1 213146172 213146172 C A VASH2 Missense_Mutation p.L206M 0.14 deleterious(0.04) probably_damaging(1) TCGA-CM-5861-01 1 213414700 213414700 A G RPS6KC1 Silent p.E627E 0.12 TCGA-CM-5861-01 1 213415992 213415992 T G RPS6KC1 Missense_Mutation p.C968G 0.18 deleterious(0.01) probably_damaging(1) TCGA-CM-5861-01 1 214454662 214454662 G - SMYD2 Frame_Shift_Del p.A23Lfs*84 0.59 TCGA-CM-5861-01 1 214814566 214814566 T G CENPF Missense_Mutation p.I962S 0.20 possibly_damaging(0.773) TCGA-CM-5861-01 1 216258113 216258113 T C USH2A Silent p.E1698E 0.14 TCGA-CM-5861-01 1 216363608 216363608 A G USH2A Silent p.G1451G 0.11 TCGA-CM-5861-01 1 21809785 21809785 T C NBPF3 Missense_Mutation p.V603A 0.35 tolerated(0.18) benign(0.039) TCGA-CM-5861-01 1 22211101 22211101 C T HSPG2 Missense_Mutation p.G525D 0.42 probably_damaging(0.911) TCGA-CM-5861-01 1 224475578 224475578 G A NVL Missense_Mutation p.P565S 0.60 deleterious(0) probably_damaging(0.979) TCGA-CM-5861-01 1 225525024 225525024 C T DNAH14 Silent p.A2514A 0.24 TCGA-CM-5861-01 1 226253603 226253603 A G H3F3A Intron 0.19 TCGA-CM-5861-01 1 226549761 226549761 G A PARP1 Missense_Mutation p.P958S 0.09 deleterious(0) possibly_damaging(0.866) TCGA-CM-5861-01 1 226552775 226552775 G A PARP1 Silent p.H862H 0.29 TCGA-CM-5861-01 1 226829738 226829738 C T ITPKB Missense_Mutation p.E779K 0.23 tolerated(0.1) benign(0.155) TCGA-CM-5861-01 1 226895571 226895571 C T ITPKB Intron 0.19 TCGA-CM-5861-01 1 228399734 228399734 G A OBSCN Missense_Mutation p.A84T 0.29 probably_damaging(0.948) TCGA-CM-5861-01 1 228504505 228504505 G - OBSCN Frame_Shift_Del p.V5418Wfs*79 0.19 TCGA-CM-5861-01 1 228528898 228528898 C A OBSCN Missense_Mutation p.P6891T 0.13 benign(0.122) TCGA-CM-5861-01 1 229460857 229460857 A - CCSAP 3'UTR 0.14 TCGA-CM-5861-01 1 229460857 229460857 A T CCSAP 3'UTR 0.71 TCGA-CM-5861-01 1 230384942 230384942 A G GALNT2 Missense_Mutation p.N277S 0.20 tolerated(1) benign(0.203) TCGA-CM-5861-01 1 231044499 231044499 C T TTC13 Silent p.E809E 0.16 TCGA-CM-5861-01 1 231483640 231483640 G A SPRTN Missense_Mutation p.R140H 0.17 deleterious(0) probably_damaging(0.996) TCGA-CM-5861-01 1 231487302 231487302 G A SPRTN Missense_Mutation p.A235T 0.19 tolerated(0.57) benign(0.004) TCGA-CM-5861-01 1 231829701 231829701 G A DISC1 Missense_Mutation p.R66Q 0.25 tolerated(0.67) benign(0.031) TCGA-CM-5861-01 1 231830517 231830517 G - DISC1 Frame_Shift_Del p.D339Tfs*4 0.25 TCGA-CM-5861-01 1 23222973 23222973 T C EPHB2 Splice_Site p.X590_splice 0.28 TCGA-CM-5861-01 1 232568025 232568025 C T SIPA1L2 Silent p.P1408P 0.19 TCGA-CM-5861-01 1 233514890 233514890 C - MLK4 Frame_Shift_Del p.Q715Rfs*236 0.48 TCGA-CM-5861-01 1 235345419 235345419 T - ARID4B Frame_Shift_Del p.T939Rfs*2 0.09 TCGA-CM-5861-01 1 235383169 235383169 T C ARID4B Missense_Mutation p.T508A 0.06 tolerated(0.78) benign(0) TCGA-CM-5861-01 1 235914663 235914663 C T LYST Splice_Site p.X2543_splice 0.53 TCGA-CM-5861-01 1 236157066 236157066 G A NID1 Silent p.C878C 0.70 TCGA-CM-5861-01 1 236228165 236228165 T C NID1 Missense_Mutation p.D72G 0.22 tolerated(0.23) benign(0) TCGA-CM-5861-01 1 236306290 236306290 G A GPR137B Missense_Mutation p.C123Y 0.20 deleterious(0.04) probably_damaging(1) TCGA-CM-5861-01 1 236645968 236645968 A G EDARADD 3'UTR 0.22 TCGA-CM-5861-01 1 23689114 23689114 T C ZNF436 Missense_Mutation p.E254G 0.11 deleterious(0) benign(0.386) TCGA-CM-5861-01 1 237617776 237617776 A G RYR2 Missense_Mutation p.I460V 0.16 benign(0.1) TCGA-CM-5861-01 1 23763954 23763954 A G ASAP3 Missense_Mutation p.Y372H 0.39 deleterious(0) probably_damaging(0.984) TCGA-CM-5861-01 1 237819144 237819144 A G RYR2 Silent p.K2663K 0.18 TCGA-CM-5861-01 1 240371953 240371953 G T FMN2 Missense_Mutation p.G1281W 0.13 probably_damaging(0.981) TCGA-CM-5861-01 1 241758051 241758051 T C KMO 3'UTR 0.18 TCGA-CM-5861-01 1 242013788 242013788 A G EXO1 Missense_Mutation p.K21E 0.19 tolerated(0.05) possibly_damaging(0.877) TCGA-CM-5861-01 1 242048756 242048756 G T EXO1 Missense_Mutation p.K784N 0.22 tolerated(0.33) benign(0.009) TCGA-CM-5861-01 1 243329110 243329110 T - CEP170 Frame_Shift_Del p.T718Pfs*5 0.10 TCGA-CM-5861-01 1 2434429 2434429 G A PLCH2 Intron 0.38 TCGA-CM-5861-01 1 24392440 24392440 C A MYOM3 Nonsense_Mutation p.E1159* 0.34 TCGA-CM-5861-01 1 24400657 24400657 G T MYOM3 Silent p.T987T 0.35 TCGA-CM-5861-01 1 244218999 244218999 T - ZBTB18 3'UTR 0.14 TCGA-CM-5861-01 1 244219004 244219004 T C ZBTB18 3'UTR 0.59 TCGA-CM-5861-01 1 244615094 244615094 G A ADSS Missense_Mutation p.A9V 0.10 tolerated_low_confidence(0.15) benign(0.023) TCGA-CM-5861-01 1 245027598 245027598 C T HNRNPU Silent p.S4S 0.20 TCGA-CM-5861-01 1 24673118 24673118 C T GRHL3 Silent p.G510G 0.37 TCGA-CM-5861-01 1 246810997 246810997 G T CNST Missense_Mutation p.Q498H 0.12 tolerated(0.11) benign(0.006) TCGA-CM-5861-01 1 24684841 24684841 G T STPG1 3'UTR 0.23 TCGA-CM-5861-01 1 247263802 247263802 G A ZNF669 Silent p.C423C 0.62 TCGA-CM-5861-01 1 247267311 247267311 G T ZNF669 Missense_Mutation p.P64H 0.22 deleterious(0) benign(0.184) TCGA-CM-5861-01 1 247275337 247275337 C T C1orf229 Missense_Mutation p.A64T 0.15 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-CM-5861-01 1 247615281 247615281 T C OR2B11 Missense_Mutation p.K2E 0.25 tolerated(1) benign(0.006) TCGA-CM-5861-01 1 247921177 247921177 A C OR1C1 Missense_Mutation p.F178V 0.11 deleterious(0) probably_damaging(0.995) TCGA-CM-5861-01 1 248020714 248020714 G A TRIM58 Missense_Mutation p.A56T 0.59 tolerated(0.93) benign(0.011) TCGA-CM-5861-01 1 249142090 249142090 A G ZNF672 Missense_Mutation p.K206R 0.13 deleterious(0.03) possibly_damaging(0.569) TCGA-CM-5861-01 1 249142755 249142755 A G ZNF672 Missense_Mutation p.I428V 0.27 tolerated_low_confidence(0.38) benign(0.002) TCGA-CM-5861-01 1 249144380 249144380 G A ZNF692 3'UTR 0.15 TCGA-CM-5861-01 1 249150111 249150111 G T ZNF692 Missense_Mutation p.P237T 0.63 deleterious(0.03) possibly_damaging(0.548) TCGA-CM-5861-01 1 2494790 2494790 A G TNFRSF14 3'UTR 0.29 TCGA-CM-5861-01 1 24998032 24998032 T C SRRM1 Silent p.A852A 0.41 TCGA-CM-5861-01 1 26688383 26688383 T C ZNF683 Missense_Mutation p.H425R 0.23 tolerated(0.62) benign(0.015) TCGA-CM-5861-01 1 26801752 26801752 T A HMGN2 3'UTR 0.43 TCGA-CM-5861-01 1 26881683 26881683 C T RPS6KA1 Silent p.D275D 0.33 TCGA-CM-5861-01 1 27215462 27215462 A G GPN2 Missense_Mutation p.L189P 0.36 deleterious(0.02) possibly_damaging(0.874) TCGA-CM-5861-01 1 27436137 27436137 G A SLC9A1 Silent p.I315I 0.28 TCGA-CM-5861-01 1 27874574 27874574 C T AHDC1 Silent p.P1351P 0.41 TCGA-CM-5861-01 1 29606642 29606642 T C PTPRU Silent p.G619G 0.14 TCGA-CM-5861-01 1 29650301 29650301 G A PTPRU Splice_Site p.X1381_splice 0.32 TCGA-CM-5861-01 1 31414855 31414855 T C PUM1 Missense_Mutation p.Q1037R 0.37 tolerated(0.11) benign(0.006) TCGA-CM-5861-01 1 32127273 32127273 G T COL16A1 Silent p.L1238L 0.37 TCGA-CM-5861-01 1 32625076 32625076 G A KPNA6 Missense_Mutation p.A168T 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-CM-5861-01 1 32677784 32677785 AG - DCDC2B Frame_Shift_Del p.S171Wfs*33 0.30 TCGA-CM-5861-01 1 32800540 32800540 G - MARCKSL1 Frame_Shift_Del p.K83Rfs*18 0.32 TCGA-CM-5861-01 1 33354525 33354525 G A HPCA Missense_Mutation p.R9Q 0.36 tolerated(0.15) benign(0.007) TCGA-CM-5861-01 1 33409697 33409697 C A RNF19B Missense_Mutation p.G443V 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5861-01 1 3422720 3422720 C T MEGF6 Missense_Mutation p.G624R 0.31 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 1 35334496 35334496 T C DLGAP3 Missense_Mutation p.H732R 0.29 tolerated(0.79) possibly_damaging(0.833) TCGA-CM-5861-01 1 35859291 35859292 - A ZMYM4 Frame_Shift_Ins p.A956Sfs*68 0.27 TCGA-CM-5861-01 1 36643530 36643530 C - MAP7D1 Frame_Shift_Del p.C481Afs*94 0.27 TCGA-CM-5861-01 1 36788275 36788275 A G EVA1B Missense_Mutation p.L40P 0.24 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 1 37267626 37267626 C A GRIK3 Silent p.V862V 0.34 TCGA-CM-5861-01 1 37307403 37307403 G A GRIK3 Silent p.D488D 0.38 TCGA-CM-5861-01 1 3775349 3775349 C A DFFB Missense_Mutation p.P61H 0.41 tolerated(0.16) possibly_damaging(0.676) TCGA-CM-5861-01 1 38003596 38003596 C T SNIP1 Missense_Mutation p.R315H 0.33 deleterious(0) possibly_damaging(0.588) TCGA-CM-5861-01 1 39361731 39361731 G A RHBDL2 Silent p.A173A 0.32 TCGA-CM-5861-01 1 39751021 39751021 T C MACF1 Missense_Mutation p.C443R 0.32 possibly_damaging(0.74) TCGA-CM-5861-01 1 40717303 40717303 G A TMCO2 3'UTR 0.30 TCGA-CM-5861-01 1 41946777 41946777 G T EDN2 Silent p.L144L 0.40 TCGA-CM-5861-01 1 42654971 42654972 - A FOXJ3 Intron 0.28 TCGA-CM-5861-01 1 43215917 43215917 G A LEPRE1 Missense_Mutation p.R554C 0.39 deleterious(0.01) possibly_damaging(0.827) TCGA-CM-5861-01 1 43637996 43637996 A G EBNA1BP2 Missense_Mutation p.F33L 0.15 benign(0) TCGA-CM-5861-01 1 44442875 44442875 T C ATP6V0B Missense_Mutation p.V193A 0.27 deleterious(0) possibly_damaging(0.803) TCGA-CM-5861-01 1 47013416 47013416 C - KNCN Frame_Shift_Del p.A98Lfs*? 0.35 TCGA-CM-5861-01 1 47904260 47904260 C T FOXD2 Silent p.S151S 0.44 TCGA-CM-5861-01 1 51875222 51875222 A C EPS15 Silent p.A420A 0.16 TCGA-CM-5861-01 1 53543404 53543404 C T PODN Silent p.S310S 0.46 TCGA-CM-5861-01 1 55521826 55521826 C T PCSK9 Silent p.D320D 0.36 TCGA-CM-5861-01 1 60280880 60280880 G A HOOK1 Intron 0.31 TCGA-CM-5861-01 1 64672451 64672451 A G UBE2U Silent p.L51L 0.30 TCGA-CM-5861-01 1 64698332 64698332 T C UBE2U Silent p.L199L 0.36 TCGA-CM-5861-01 1 6681749 6681749 T - PHF13 3'UTR 0.20 TCGA-CM-5861-01 1 70451966 70451966 A - LRRC7 Frame_Shift_Del p.N240Tfs*3 0.27 TCGA-CM-5861-01 1 70671108 70671108 C T LRRC40 Missense_Mutation p.G39D 0.17 deleterious(0) probably_damaging(0.988) TCGA-CM-5861-01 1 75708571 75708571 C A SLC44A5 Missense_Mutation p.K157N 0.18 tolerated(0.06) possibly_damaging(0.852) TCGA-CM-5861-01 1 76397791 76397791 A T ASB17 Silent p.G62G 0.40 TCGA-CM-5861-01 1 7797003 7797003 G A CAMTA1 Silent p.A1092A 0.39 TCGA-CM-5861-01 1 78398877 78398877 A - NEXN Intron 0.57 TCGA-CM-5861-01 1 86426947 86426947 T C COL24A1 Silent p.G849G 0.35 TCGA-CM-5861-01 1 86818559 86818559 C T ODF2L Missense_Mutation p.V626I 0.39 tolerated(0.09) benign(0.105) TCGA-CM-5861-01 1 87810502 87810502 C T LMO4 3'UTR 0.36 TCGA-CM-5861-01 1 9074903 9074903 G A SLC2A7 Missense_Mutation p.T247M 0.36 tolerated(0.08) benign(0.002) TCGA-CM-5861-01 1 93602422 93602422 T C MTF2 Silent p.D540D 0.32 TCGA-CM-5861-01 1 95699871 95699871 G A RWDD3 Missense_Mutation p.E29K 0.35 tolerated(0.14) benign(0.056) TCGA-CM-5861-01 1 9780916 9780916 A G PIK3CD Silent p.L546L 0.32 TCGA-CM-5861-01 1 980779 980779 C A AGRN Silent p.T804T 0.50 TCGA-CM-5861-01 1 99470158 99470158 C A LPPR5 Missense_Mutation p.V24L 0.27 deleterious(0.03) benign(0.043) TCGA-CM-5861-01 20 16506735 16506735 A G KIF16B Splice_Site p.X77_splice 0.31 TCGA-CM-5861-01 20 18371061 18371061 C - DZANK1 Frame_Shift_Del p.E618Kfs*6 0.17 TCGA-CM-5861-01 20 19956238 19956238 G T RIN2 Silent p.R572R 0.45 TCGA-CM-5861-01 20 20033185 20033185 G A CRNKL1 Silent p.D95D 0.32 TCGA-CM-5861-01 20 23335289 23335289 A G NXT1 3'UTR 0.13 TCGA-CM-5861-01 20 25273102 25273102 C - PYGB Frame_Shift_Del p.T677Kfs*4 0.36 TCGA-CM-5861-01 20 30309697 30309697 T C BCL2L1 Missense_Mutation p.T109A 0.35 tolerated(0.21) benign(0.203) TCGA-CM-5861-01 20 30533654 30533654 T C PDRG1 Missense_Mutation p.N120D 0.39 deleterious(0.01) benign(0.021) TCGA-CM-5861-01 20 31291828 31291828 T C COMMD7 Missense_Mutation p.I175V 0.06 tolerated(0.23) benign(0.002) TCGA-CM-5861-01 20 3146382 3146382 G A LZTS3 Missense_Mutation p.R362W 0.22 deleterious(0) probably_damaging(0.989) TCGA-CM-5861-01 20 32211088 32211088 G A CBFA2T2 Silent p.R235R 0.33 TCGA-CM-5861-01 20 33128521 33128521 G T DYNLRB1 3'UTR 0.13 TCGA-CM-5861-01 20 33591308 33591308 A G TRPC4AP Missense_Mutation p.Y721H 0.25 tolerated(0.55) benign(0.063) TCGA-CM-5861-01 20 34021804 34021804 C T GDF5 Missense_Mutation p.R470Q 0.33 deleterious(0.01) benign(0.075) TCGA-CM-5861-01 20 34208887 34208887 T C SPAG4 Silent p.R419R 0.29 TCGA-CM-5861-01 20 34572038 34572038 T G CNBD2 Missense_Mutation p.L181R 0.31 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 20 35444263 35444263 G A SOGA1 Missense_Mutation p.R528C 0.28 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 20 35769598 35769598 A C MROH8 Silent p.T512T 0.38 TCGA-CM-5861-01 20 35812694 35812694 A G RPN2 Missense_Mutation p.D42G 0.38 tolerated(0.26) benign(0.005) TCGA-CM-5861-01 20 36407705 36407705 C T CTNNBL1 Silent p.G333G 0.05 TCGA-CM-5861-01 20 3804846 3804846 A G AP5S1 Missense_Mutation p.I169V 0.32 tolerated(0.45) benign(0.009) TCGA-CM-5861-01 20 3914663 3914663 C T RNF24 3'UTR 0.15 TCGA-CM-5861-01 20 39746897 39746897 A - TOP1 Frame_Shift_Del p.T639Lfs*6 0.29 TCGA-CM-5861-01 20 42574538 42574539 - T TOX2 Intron 0.27 TCGA-CM-5861-01 20 42979490 42979491 - A R3HDML 3'UTR 0.13 TCGA-CM-5861-01 20 43552899 43552899 T C PABPC1L Splice_Site p.X324_splice 0.31 TCGA-CM-5861-01 20 44045258 44045258 C A PIGT Silent p.R97R 0.30 TCGA-CM-5861-01 20 44259607 44259607 A G WFDC10A Missense_Mutation p.N64D 0.36 deleterious(0.05) possibly_damaging(0.874) TCGA-CM-5861-01 20 44573590 44573590 G A PCIF1 Silent p.K363K 0.27 TCGA-CM-5861-01 20 45022182 45022182 A G ELMO2 Missense_Mutation p.Y60H 0.14 deleterious(0) probably_damaging(0.99) TCGA-CM-5861-01 20 46385992 46385992 C T SULF2 Missense_Mutation p.R39H 0.37 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 20 4776509 4776509 G - RASSF2 Frame_Shift_Del p.P80Lfs*20 0.31 TCGA-CM-5861-01 20 47886690 47886691 - C ZNFX1 Frame_Shift_Ins p.R554Qfs*30 0.23 TCGA-CM-5861-01 20 47887781 47887781 C T ZNFX1 Missense_Mutation p.V190I 0.37 tolerated(0.07) benign(0.415) TCGA-CM-5861-01 20 48522081 48522081 C T SPATA2 3'UTR 0.32 TCGA-CM-5861-01 20 48744671 48744671 A C TMEM189-UBE2V1 Missense_Mutation p.F178V 0.14 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-CM-5861-01 20 49620522 49620522 A G KCNG1 3'UTR 0.44 TCGA-CM-5861-01 20 50406766 50406766 A G SALL4 Silent p.G752G 0.37 TCGA-CM-5861-01 20 5170471 5170471 G A CDS2 Missense_Mutation p.A398T 0.15 tolerated(0.77) benign(0.036) TCGA-CM-5861-01 20 55033584 55033585 - A CASS4 Frame_Shift_Ins p.L716Afs*37 0.44 TCGA-CM-5861-01 20 57564938 57564938 C T NELFCD Missense_Mutation p.T246M 0.37 deleterious(0) probably_damaging(0.989) TCGA-CM-5861-01 20 5939374 5939374 T C MCM8 Splice_Site p.X263_splice 0.33 TCGA-CM-5861-01 20 6021782 6021782 T C LRRN4 Silent p.A703A 0.20 TCGA-CM-5861-01 20 60469999 60469999 A G CDH4 Missense_Mutation p.T362A 0.19 tolerated(0.48) benign(0.331) TCGA-CM-5861-01 20 60740551 60740551 G A SS18L1 Silent p.T299T 0.34 TCGA-CM-5861-01 20 60883827 60883827 C T ADRM1 3'UTR 0.34 TCGA-CM-5861-01 20 61576299 61576299 C A GID8 3'UTR 0.18 TCGA-CM-5861-01 20 61943276 61943277 - C COL20A1 Frame_Shift_Ins p.R561Efs*168 0.45 TCGA-CM-5861-01 20 62076082 62076082 C T KCNQ2 Missense_Mutation p.R207Q 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5861-01 20 62076706 62076706 A G KCNQ2 Silent p.T133T 0.29 TCGA-CM-5861-01 20 62193968 62193968 G A HELZ2 Silent p.F2069F 0.41 TCGA-CM-5861-01 20 62195239 62195239 C T HELZ2 Missense_Mutation p.A1646T 0.32 tolerated(0.29) benign(0.003) TCGA-CM-5861-01 20 62320916 62320916 C T RTEL1 Missense_Mutation p.P671L 0.45 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 20 62421202 62421202 C T ZBTB46 Silent p.S303S 0.24 TCGA-CM-5861-01 20 62577983 62577983 A G UCKL1 Missense_Mutation p.S43P 0.39 deleterious(0.02) possibly_damaging(0.772) TCGA-CM-5861-01 21 11039383 11039383 T C BAGE2 RNA 0.06 TCGA-CM-5861-01 21 30331792 30331792 T - LTN1 Frame_Shift_Del p.T907Hfs*11 0.22 TCGA-CM-5861-01 21 33688825 33688825 C A URB1 Nonsense_Mutation p.E2196* 0.42 TCGA-CM-5861-01 21 34923179 34923179 T C SON Silent p.L548L 0.32 TCGA-CM-5861-01 21 37617728 37617728 G - DOPEY2 Frame_Shift_Del p.G1152Afs*25 0.29 TCGA-CM-5861-01 21 38081493 38081493 G A SIM2 Silent p.P67P 0.40 TCGA-CM-5861-01 21 40636536 40636536 G T BRWD1 Missense_Mutation p.Q579K 0.08 deleterious(0) possibly_damaging(0.824) TCGA-CM-5861-01 21 44515605 44515605 C A U2AF1 Missense_Mutation p.E97D 0.32 tolerated(0.07) benign(0.133) TCGA-CM-5861-01 21 45152493 45152493 T C PDXK Intron 0.42 TCGA-CM-5861-01 21 45451971 45451971 G T TRAPPC10 Splice_Site p.X23_splice 0.31 TCGA-CM-5861-01 21 45751867 45751867 A G C21orf2 Missense_Mutation p.L135P 0.20 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 21 46320304 46320304 G A ITGB2 Silent p.G276G 0.38 TCGA-CM-5861-01 21 46645540 46645540 C T ADARB1 3'UTR 0.33 TCGA-CM-5861-01 21 46707653 46707653 T C POFUT2 Intron 0.28 TCGA-CM-5861-01 21 46900000 46900001 GA - COL18A1 Frame_Shift_Del p.G626Afs*24 0.19 TCGA-CM-5861-01 21 46909411 46909411 C T COL18A1 Silent p.G825G 0.37 TCGA-CM-5861-01 21 46929359 46929359 G A COL18A1 Silent p.A1293A 0.43 TCGA-CM-5861-01 21 47419071 47419073 ACG - COL6A1 In_Frame_Del p.D561del 0.37 TCGA-CM-5861-01 21 47575483 47575483 A G FTCD 5'Flank 0.25 TCGA-CM-5861-01 21 47773914 47773914 G T PCNT Missense_Mutation p.G565C 0.36 benign(0.009) TCGA-CM-5861-01 21 47954523 47954523 C T DIP2A Missense_Mutation p.T522M 0.35 deleterious(0.05) probably_damaging(0.991) TCGA-CM-5861-01 22 18299508 18299508 T C MICAL3 Missense_Mutation p.D1798G 0.33 probably_damaging(0.998) TCGA-CM-5861-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.52 TCGA-CM-5861-01 22 20800738 20800738 C T KLHL22 Missense_Mutation p.V511M 0.43 deleterious(0) probably_damaging(0.931) TCGA-CM-5861-01 22 21800078 21800078 G A HIC2 Silent p.L298L 0.47 TCGA-CM-5861-01 22 24628935 24628935 T C GGT5 Missense_Mutation p.H151R 0.27 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 22 25120973 25120973 T C PIWIL3 Silent p.S713S 0.40 TCGA-CM-5861-01 22 26164898 26164898 G - MYO18B Frame_Shift_Del p.V340Cfs*3 0.24 TCGA-CM-5861-01 22 26895376 26895376 C A TFIP11 Missense_Mutation p.Q341H 0.12 deleterious(0.03) possibly_damaging(0.717) TCGA-CM-5861-01 22 29682981 29682981 G A EWSR1 Silent p.P223P 0.21 TCGA-CM-5861-01 22 29736663 29736663 G A AP1B1 Silent p.G660G 0.45 TCGA-CM-5861-01 22 29758988 29758988 A G AP1B1 Splice_Site p.X48_splice 0.36 TCGA-CM-5861-01 22 30885725 30885728 CCCT ACC SEC14L4 3'UTR 0.26 TCGA-CM-5861-01 22 30888131 30888131 G A SEC14L4 Nonsense_Mutation p.Q226* 0.33 TCGA-CM-5861-01 22 32014489 32014489 T - SFI1 3'UTR 0.28 TCGA-CM-5861-01 22 35661042 35661042 A - HMGXB4 Frame_Shift_Del p.K222Nfs*16 0.19 TCGA-CM-5861-01 22 36055598 36055598 G T APOL6 Missense_Mutation p.W329C 0.33 tolerated_low_confidence(0.2) possibly_damaging(0.759) TCGA-CM-5861-01 22 36055603 36055604 - TC APOL6 Frame_Shift_Ins p.V332Lfs*29 0.29 TCGA-CM-5861-01 22 36556906 36556906 A G APOL3 Missense_Mutation p.S12P 0.38 benign(0.307) TCGA-CM-5861-01 22 36696961 36696961 T A MYH9 Missense_Mutation p.E925V 0.28 probably_damaging(0.939) TCGA-CM-5861-01 22 36715604 36715604 C T MYH9 Silent p.A363A 0.45 TCGA-CM-5861-01 22 38203116 38203116 G A H1F0 3'UTR 0.37 TCGA-CM-5861-01 22 38539200 38539200 T A PLA2G6 Missense_Mutation p.Y174F 0.42 tolerated(0.68) benign(0.008) TCGA-CM-5861-01 22 38610904 38610904 C A MAFF 3'UTR 0.27 TCGA-CM-5861-01 22 38612199 38612199 T C MAFF 3'UTR 0.50 TCGA-CM-5861-01 22 39262259 39262259 T C CBX6 Silent p.V398V 0.41 TCGA-CM-5861-01 22 39413963 39413963 C A APOBEC3C Missense_Mutation p.L123I 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-CM-5861-01 22 39475007 39475007 C T APOBEC3G Missense_Mutation p.R30W 0.38 tolerated(0.16) benign(0.047) TCGA-CM-5861-01 22 39529989 39529989 G T CBX7 Silent p.T221T 0.37 TCGA-CM-5861-01 22 39711250 39711250 T C RPL3 Intron 0.36 TCGA-CM-5861-01 22 40037141 40037141 C A CACNA1I Missense_Mutation p.A337D 0.34 deleterious(0) possibly_damaging(0.892) TCGA-CM-5861-01 22 40676077 40676077 A G TNRC6B Missense_Mutation p.D1114G 0.09 tolerated(1) benign(0.012) TCGA-CM-5861-01 22 40807640 40807640 G A MKL1 Silent p.S850S 0.39 TCGA-CM-5861-01 22 40827437 40827437 C T MKL1 Silent p.S37S 0.41 TCGA-CM-5861-01 22 41488899 41488899 C T EP300 5'UTR 0.41 TCGA-CM-5861-01 22 41919844 41919846 AAG - ACO2 In_Frame_Del p.K462del 0.48 TCGA-CM-5861-01 22 42456369 42456369 T C NAGA Missense_Mutation p.T384A 0.13 tolerated(0.35) benign(0.001) TCGA-CM-5861-01 22 42970200 42970200 G T SERHL2 3'UTR 0.44 TCGA-CM-5861-01 22 43568413 43568413 T C TTLL12 Missense_Mutation p.N497D 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-CM-5861-01 22 43820999 43820999 G A MPPED1 Missense_Mutation p.R3H 0.28 tolerated_low_confidence(0.34) possibly_damaging(0.84) TCGA-CM-5861-01 22 44178204 44178204 C - EFCAB6 Intron 0.34 TCGA-CM-5861-01 22 46658447 46658447 T C PKDREJ Missense_Mutation p.Y258C 0.24 tolerated(0.18) possibly_damaging(0.796) TCGA-CM-5861-01 22 46835169 46835169 C A CELSR1 Missense_Mutation p.E1441D 0.40 deleterious(0.01) possibly_damaging(0.665) TCGA-CM-5861-01 22 47857405 47857405 C A LL22NC03-75H12.2 3'UTR 0.30 TCGA-CM-5861-01 22 50297991 50297991 G - ALG12 Frame_Shift_Del p.Q386Rfs*75 0.32 TCGA-CM-5861-01 22 50581575 50581575 C T MOV10L1 Silent p.C761C 0.37 TCGA-CM-5861-01 22 50657578 50657578 C T TUBGCP6 Silent p.A1515A 0.30 TCGA-CM-5861-01 22 50719058 50719058 G A PLXNB2 Silent p.R1345R 0.53 TCGA-CM-5861-01 22 50876023 50876023 A G PPP6R2 Missense_Mutation p.D565G 0.41 deleterious(0.05) possibly_damaging(0.479) TCGA-CM-5861-01 22 51020756 51020756 G A CHKB Silent p.C85C 0.61 TCGA-CM-5861-01 22 51143268 51143268 G A SHANK3 Missense_Mutation p.R641H 0.48 probably_damaging(0.999) TCGA-CM-5861-01 2 100055102 100055102 T - REV1 Frame_Shift_Del p.M392* 0.27 TCGA-CM-5861-01 2 100900936 100900936 C T LONRF2 Missense_Mutation p.A697T 0.47 deleterious(0.01) possibly_damaging(0.642) TCGA-CM-5861-01 2 102038890 102038891 - G RFX8 Frame_Shift_Ins p.L40Ffs*3 0.24 TCGA-CM-5861-01 2 103324587 103324587 G A SLC9A2 Missense_Mutation p.S693N 0.32 tolerated(0.15) benign(0.012) TCGA-CM-5861-01 2 113286456 113286456 G A TTL 3'UTR 0.19 TCGA-CM-5861-01 2 113513742 113513742 A G CKAP2L Silent p.S402S 0.13 TCGA-CM-5861-01 2 114340578 114340578 T - MIR1302-3 RNA 0.09 TCGA-CM-5861-01 2 119600496 119600496 G A EN1 3'UTR 0.50 TCGA-CM-5861-01 2 120634915 120634915 A G PTPN4 Missense_Mutation p.N88S 0.33 tolerated(0.94) possibly_damaging(0.572) TCGA-CM-5861-01 2 121729594 121729594 C T GLI2 Silent p.T379T 0.33 TCGA-CM-5861-01 2 128389172 128389172 C A MYO7B Intron 0.34 TCGA-CM-5861-01 2 128463985 128463985 C T WDR33 Missense_Mutation p.R1308Q 0.38 deleterious_low_confidence(0) unknown(0) TCGA-CM-5861-01 2 130939360 130939360 G A MZT2B 5'Flank 0.56 TCGA-CM-5861-01 2 130948156 130948157 - G MZT2B Frame_Shift_Ins p.G148Rfs*34 0.12 TCGA-CM-5861-01 2 131519625 131519625 A G AMER3 Splice_Site 0.30 TCGA-CM-5861-01 2 131812930 131812930 C A FAM168B Silent p.T130T 0.34 TCGA-CM-5861-01 2 136622584 136622584 A G MCM6 Silent p.H359H 0.21 TCGA-CM-5861-01 2 138414718 138414718 G A THSD7B Missense_Mutation p.V1458I 0.44 tolerated(1) unknown(0) TCGA-CM-5861-01 2 141115658 141115659 - A LRP1B Frame_Shift_Ins p.C3762Lfs*2 0.23 TCGA-CM-5861-01 2 141457865 141457865 T C LRP1B Missense_Mutation p.I2251M 0.34 benign(0.308) TCGA-CM-5861-01 2 149247543 149247543 T - MBD5 Frame_Shift_Del p.L1216* 0.15 TCGA-CM-5861-01 2 155303185 155303186 - A GALNT13 Intron 0.16 TCGA-CM-5861-01 2 157186111 157186111 C - NR4A2 Frame_Shift_Del p.L198Cfs*5 0.37 TCGA-CM-5861-01 2 15753352 15753352 C A DDX1 Missense_Mutation p.L321I 0.13 tolerated(0.07) possibly_damaging(0.562) TCGA-CM-5861-01 2 159519828 159519828 A G PKP4 Silent p.K816K 0.20 TCGA-CM-5861-01 2 160086475 160086475 C T TANC1 Missense_Mutation p.S1513F 0.26 tolerated_low_confidence(0.69) benign(0.015) TCGA-CM-5861-01 2 1642751 1642751 C T PXDN Splice_Site p.X1358_splice 0.20 TCGA-CM-5861-01 2 1653259 1653259 G A PXDN Missense_Mutation p.R765C 0.33 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 2 166229828 166229828 A G SCN2A Missense_Mutation p.R1315G 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5861-01 2 168103446 168103446 C A XIRP2 Silent p.L1848L 0.35 TCGA-CM-5861-01 2 169847402 169847402 C A ABCB11 Missense_Mutation p.A273S 0.28 deleterious(0.03) probably_damaging(0.913) TCGA-CM-5861-01 2 170002372 170002372 C A LRP2 Missense_Mutation p.K4291N 0.15 benign(0.078) TCGA-CM-5861-01 2 171906683 171906683 G A TLK1 Missense_Mutation p.A245V 0.35 tolerated(0.13) benign(0.023) TCGA-CM-5861-01 2 172584914 172584914 C T DYNC1I2 Missense_Mutation p.L415F 0.16 deleterious(0.03) possibly_damaging(0.728) TCGA-CM-5861-01 2 174774866 174774866 C T SP3 Missense_Mutation p.A717T 0.38 tolerated(0.09) probably_damaging(0.971) TCGA-CM-5861-01 2 175201814 175201814 G A AC018470.1 Missense_Mutation p.A113V 0.41 tolerated_low_confidence(0.05) unknown(0) TCGA-CM-5861-01 2 176046210 176046210 G T ATP5G3 Intron 0.41 TCGA-CM-5861-01 2 176959310 176959310 A G HOXD13 Missense_Mutation p.Y295C 0.28 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 2 176987600 176987600 C T HOXD9 Missense_Mutation p.A35V 0.48 deleterious(0.05) benign(0.424) TCGA-CM-5861-01 2 179201055 179201055 T C OSBPL6 Missense_Mutation p.S229P 0.44 tolerated(0.22) benign(0) TCGA-CM-5861-01 2 179360260 179360261 - T PLEKHA3 Frame_Shift_Ins p.N164* 0.26 TCGA-CM-5861-01 2 179399756 179399756 C A TTN Missense_Mutation p.K33862N 0.32 TCGA-CM-5861-01 2 179427121 179427121 C T TTN Missense_Mutation p.C27913Y 0.33 TCGA-CM-5861-01 2 179445243 179445243 C T TTN Missense_Mutation p.R22288H 0.34 TCGA-CM-5861-01 2 179459265 179459265 T C TTN Missense_Mutation p.Y19319C 0.31 TCGA-CM-5861-01 2 179470069 179470069 T - TTN Intron 0.11 TCGA-CM-5861-01 2 179481207 179481207 T G TTN Missense_Mutation p.K16104T 0.36 TCGA-CM-5861-01 2 179594554 179594554 G A TTN Silent p.D6142D 0.36 TCGA-CM-5861-01 2 179643639 179643639 C A TTN Silent p.P1390P 0.36 TCGA-CM-5861-01 2 183642001 183642001 C T DNAJC10 3'UTR 0.40 TCGA-CM-5861-01 2 186673814 186673814 G A FSIP2 Missense_Mutation p.R6683H 0.12 probably_damaging(0.998) TCGA-CM-5861-01 2 187511481 187511481 T C ITGAV Missense_Mutation p.S410P 0.18 tolerated(0.61) benign(0.003) TCGA-CM-5861-01 2 196592943 196592943 T C SLC39A10 Missense_Mutation p.L736P 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-CM-5861-01 2 197021224 197021224 G - STK17B Frame_Shift_Del p.R92Vfs*17 0.18 TCGA-CM-5861-01 2 201407316 201407316 C A SGOL2 Silent p.S134S 0.23 TCGA-CM-5861-01 2 202072887 202072887 A C CASP10 Missense_Mutation p.Q301H 0.37 tolerated(0.08) benign(0.008) TCGA-CM-5861-01 2 203167772 203167772 G A NOP58 Missense_Mutation p.A511T 0.11 tolerated(0.4) benign(0) TCGA-CM-5861-01 2 204737673 204737673 G A CTLA4 3'UTR 0.38 TCGA-CM-5861-01 2 208606956 208606956 G C CCNYL1 Missense_Mutation p.V126L 0.32 tolerated(0.15) benign(0.105) TCGA-CM-5861-01 2 208841834 208841834 G T PLEKHM3 Missense_Mutation p.L363I 0.28 tolerated(0.42) benign(0.012) TCGA-CM-5861-01 2 210737659 210737659 T C UNC80 Missense_Mutation p.W1271R 0.30 probably_damaging(0.994) TCGA-CM-5861-01 2 211460274 211460274 T C CPS1 Missense_Mutation p.Y449H 0.12 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 2 21251355 21251355 C T APOB Missense_Mutation p.R558Q 0.37 probably_damaging(0.998) TCGA-CM-5861-01 2 219501009 219501009 G T PLCD4 Silent p.L692L 0.06 TCGA-CM-5861-01 2 220353308 220353308 G A SPEG Silent p.K2649K 0.23 TCGA-CM-5861-01 2 220437216 220437216 C A INHA Silent p.A40A 0.33 TCGA-CM-5861-01 2 223161788 223161788 C T PAX3 Missense_Mutation p.R77H 0.25 deleterious(0.05) probably_damaging(0.97) TCGA-CM-5861-01 2 223806251 223806251 G A ACSL3 Missense_Mutation p.R681H 0.29 tolerated(0.25) benign(0.017) TCGA-CM-5861-01 2 223917660 223917660 T C KCNE4 Missense_Mutation p.Y38H 0.38 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 2 223919401 223919401 T G KCNE4 3'UTR 0.25 TCGA-CM-5861-01 2 224847492 224847492 T G SERPINE2 Silent p.T309T 0.29 TCGA-CM-5861-01 2 233390969 233390969 C T CHRND Missense_Mutation p.A15V 0.36 tolerated(0.66) benign(0.001) TCGA-CM-5861-01 2 233785159 233785159 C T NGEF Silent p.E221E 0.38 TCGA-CM-5861-01 2 238250706 238250706 A G COL6A3 Splice_Site p.X2589_splice 0.33 TCGA-CM-5861-01 2 239039298 239039298 G - ESPNL Frame_Shift_Del p.V650Cfs*35 0.46 TCGA-CM-5861-01 2 240111561 240111561 G A HDAC4 Nonsense_Mutation p.Q103* 0.23 TCGA-CM-5861-01 2 241404941 241404941 C T GPC1 Silent p.P440P 0.34 TCGA-CM-5861-01 2 241494425 241494425 G A ANKMY1 5'UTR 0.25 TCGA-CM-5861-01 2 242004350 242004350 A G SNED1 Missense_Mutation p.Y897C 0.25 deleterious(0) probably_damaging(0.981) TCGA-CM-5861-01 2 242202287 242202287 C A HDLBP Nonsense_Mutation p.E97* 0.31 TCGA-CM-5861-01 2 242607633 242607633 G A ATG4B Missense_Mutation p.V270I 0.30 tolerated(0.09) benign(0.066) TCGA-CM-5861-01 2 242684130 242684130 G A D2HGDH Missense_Mutation p.A231T 0.14 deleterious(0.02) probably_damaging(0.955) TCGA-CM-5861-01 2 242742890 242742890 C T GAL3ST2 Missense_Mutation p.A169V 0.38 deleterious(0.04) benign(0.096) TCGA-CM-5861-01 2 242813942 242813942 G A CXXC11 Missense_Mutation p.A79T 0.40 deleterious(0.05) possibly_damaging(0.587) TCGA-CM-5861-01 2 24342447 24342447 C A PFN4 Nonsense_Mutation p.G121* 0.39 TCGA-CM-5861-01 2 25964834 25964834 A - ASXL2 3'UTR 0.23 TCGA-CM-5861-01 2 26399265 26399265 C T GAREML Silent p.C55C 0.19 TCGA-CM-5861-01 2 26486322 26486322 A G HADHB Missense_Mutation p.T62A 0.36 deleterious(0.04) possibly_damaging(0.617) TCGA-CM-5861-01 2 27246988 27246988 A G MAPRE3 Missense_Mutation p.K98E 0.36 deleterious(0) probably_damaging(0.953) TCGA-CM-5861-01 2 27428359 27428359 G A SLC5A6 Missense_Mutation p.A198V 0.38 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 2 27478183 27478183 G T SLC30A3 Silent p.A388A 0.42 TCGA-CM-5861-01 2 27528630 27528630 T G TRIM54 Missense_Mutation p.L305R 0.43 deleterious(0.01) probably_damaging(0.979) TCGA-CM-5861-01 2 27590966 27590966 C A EIF2B4 Missense_Mutation p.G231C 0.09 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 2 29296221 29296221 T C C2orf71 Missense_Mutation p.T303A 0.43 tolerated(0.81) benign(0.008) TCGA-CM-5861-01 2 31360999 31360999 C - GALNT14 5'UTR 0.26 TCGA-CM-5861-01 2 32740213 32740213 T C BIRC6 Silent p.H3575H 0.27 TCGA-CM-5861-01 2 3391659 3391659 C T TRAPPC12 Missense_Mutation p.R89W 0.42 tolerated_low_confidence(0.15) possibly_damaging(0.719) TCGA-CM-5861-01 2 38523297 38523298 - A ATL2 Intron 0.27 TCGA-CM-5861-01 2 39158366 39158366 T C ARHGEF33 Missense_Mutation p.L160P 0.35 tolerated(0.17) possibly_damaging(0.598) TCGA-CM-5861-01 2 39185239 39185239 T C ARHGEF33 Missense_Mutation p.S479P 0.32 tolerated_low_confidence(0.18) benign(0.02) TCGA-CM-5861-01 2 42180444 42180444 T C C2orf91 5'UTR 0.39 TCGA-CM-5861-01 2 42543117 42543117 T C EML4 Silent p.D661D 0.34 TCGA-CM-5861-01 2 46803229 46803229 G T RHOQ Missense_Mutation p.D69Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 2 50765741 50765741 T C NRXN1 Missense_Mutation p.Y638C 0.37 deleterious(0) probably_damaging(0.975) TCGA-CM-5861-01 2 54081512 54081512 A G GPR75 Missense_Mutation p.F128L 0.33 tolerated(0.05) probably_damaging(0.996) TCGA-CM-5861-01 2 55481261 55481261 T - MTIF2 Frame_Shift_Del p.T194Rfs*37 0.32 TCGA-CM-5861-01 2 56420056 56420056 C T CCDC85A Missense_Mutation p.R241W 0.39 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 2 5834578 5834578 G - SOX11 3'UTR 0.16 TCGA-CM-5861-01 2 58381913 58381913 A T VRK2 Intron 0.33 TCGA-CM-5861-01 2 64812561 64812561 G A AFTPH Missense_Mutation p.D849N 0.33 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 2 68358245 68358245 T C WDR92 3'UTR 0.51 TCGA-CM-5861-01 2 69472598 69472598 C T ANTXR1 Missense_Mutation p.P559L 0.39 deleterious_low_confidence(0) unknown(0) TCGA-CM-5861-01 2 70142409 70142409 A G MXD1 5'UTR 0.34 TCGA-CM-5861-01 2 71191573 71191573 C - ATP6V1B1 Frame_Shift_Del p.I386Sfs*10 0.28 TCGA-CM-5861-01 2 71661966 71661966 A T ZNF638 3'UTR 0.14 TCGA-CM-5861-01 2 73302805 73302805 G A RAB11FIP5 Silent p.H602H 0.34 TCGA-CM-5861-01 2 73486096 73486097 - C FBXO41 3'UTR 0.53 TCGA-CM-5861-01 2 73676996 73676996 T C ALMS1 Silent p.S1113S 0.35 TCGA-CM-5861-01 2 73799825 73799825 G A ALMS1 Silent p.E3606E 0.33 TCGA-CM-5861-01 2 74593591 74593591 C T DCTN1 Missense_Mutation p.E875K 0.38 deleterious(0.03) probably_damaging(0.94) TCGA-CM-5861-01 2 74760968 74760968 C A LOXL3 Intron 0.35 TCGA-CM-5861-01 2 74763192 74763192 A G LOXL3 Silent p.A393A 0.37 TCGA-CM-5861-01 2 75720287 75720287 T A EVA1A 3'UTR 0.22 TCGA-CM-5861-01 2 95941836 95941836 C T PROM2 Silent p.R151R 0.26 TCGA-CM-5861-01 2 97031622 97031622 C T NCAPH Silent p.D569D 0.30 TCGA-CM-5861-01 2 97217598 97217598 C T ARID5A Missense_Mutation p.R445C 0.37 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 2 97355402 97355402 C A FER1L5 RNA 0.28 TCGA-CM-5861-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.20 TCGA-CM-5861-01 2 98340620 98340620 C T ZAP70 Missense_Mutation p.R41C 0.49 deleterious(0.01) probably_damaging(1) TCGA-CM-5861-01 3 101083676 101083676 A G SENP7 Splice_Site p.X492_splice 0.14 TCGA-CM-5861-01 3 107765958 107765958 G T CD47 3'UTR 0.43 TCGA-CM-5861-01 3 108214683 108214683 T C MYH15 Missense_Mutation p.I239V 0.10 tolerated(0.61) benign(0.021) TCGA-CM-5861-01 3 11064046 11064046 C T SLC6A1 Silent p.D202D 0.42 TCGA-CM-5861-01 3 110863855 110863855 A - PVRL3 Frame_Shift_Del p.R373Dfs*8 0.44 TCGA-CM-5861-01 3 111667904 111667904 C T PHLDB2 Silent p.S871S 0.27 TCGA-CM-5861-01 3 112251451 112251452 TG - ATG3 3'UTR 0.25 TCGA-CM-5861-01 3 112710022 112710022 C - GTPBP8 Frame_Shift_Del p.Y61Tfs*18 0.29 TCGA-CM-5861-01 3 113120560 113120560 A G WDR52 Silent p.T399T 0.34 TCGA-CM-5861-01 3 11404304 11404304 C A ATG7 Silent p.T567T 0.32 TCGA-CM-5861-01 3 115342469 115342469 G - GAP43 5'UTR 0.30 TCGA-CM-5861-01 3 119134840 119134840 C A ARHGAP31 Missense_Mutation p.P1355H 0.38 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 3 119150778 119150778 A C TMEM39A 3'UTR 0.13 TCGA-CM-5861-01 3 119531538 119531538 A G NR1I2 Silent p.P214P 0.10 TCGA-CM-5861-01 3 121203967 121203967 G T POLQ Silent p.T1898T 0.26 TCGA-CM-5861-01 3 121229080 121229080 C T POLQ Missense_Mutation p.G541D 0.33 deleterious(0) possibly_damaging(0.764) TCGA-CM-5861-01 3 121355337 121355337 C T HCLS1 Splice_Site p.X189_splice 0.36 TCGA-CM-5861-01 3 121712239 121712239 G - ILDR1 Frame_Shift_Del p.R453Gfs*127 0.37 TCGA-CM-5861-01 3 122078708 122078708 A G CCDC58 3'UTR 0.12 TCGA-CM-5861-01 3 122869089 122869089 C - PDIA5 Frame_Shift_Del p.P386Rfs*26 0.28 TCGA-CM-5861-01 3 12571578 12571578 C A TSEN2 Intron 0.56 TCGA-CM-5861-01 3 126723975 126723975 G A PLXNA1 Missense_Mutation p.V596I 0.24 tolerated(0.33) benign(0.002) TCGA-CM-5861-01 3 127298677 127298677 A G TPRA1 Missense_Mutation p.V55A 0.44 tolerated(0.15) benign(0.194) TCGA-CM-5861-01 3 128060255 128060255 A G EEFSEC Missense_Mutation p.I322M 0.22 deleterious(0) probably_damaging(0.973) TCGA-CM-5861-01 3 128339354 128339354 C T RPN1 Missense_Mutation p.G575D 0.45 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 3 12856686 12856686 G A CAND2 Silent p.V351V 0.34 TCGA-CM-5861-01 3 128875759 128875759 C T ISY1 Missense_Mutation p.R28Q 0.08 deleterious(0) possibly_damaging(0.576) TCGA-CM-5861-01 3 130110377 130110377 C T COL6A5 Silent p.T924T 0.32 TCGA-CM-5861-01 3 131220689 131220689 T - MRPL3 Intron 0.29 TCGA-CM-5861-01 3 131221602 131221602 G T MRPL3 Missense_Mutation p.L22M 0.27 tolerated_low_confidence(0.16) benign(0.259) TCGA-CM-5861-01 3 132400852 132400852 C T NPHP3 Missense_Mutation p.G1299S 0.33 tolerated(0.19) benign(0.398) TCGA-CM-5861-01 3 13546158 13546158 C T HDAC11 Missense_Mutation p.P340L 0.40 tolerated_low_confidence(0.08) benign(0.002) TCGA-CM-5861-01 3 137849715 137849715 T C A4GNT Silent p.T128T 0.27 TCGA-CM-5861-01 3 138289158 138289158 A G CEP70 Splice_Site p.X155_splice 0.12 TCGA-CM-5861-01 3 138665132 138665132 G A FOXL2 Missense_Mutation p.R145C 0.33 deleterious(0) possibly_damaging(0.898) TCGA-CM-5861-01 3 138669267 138669267 G A C3orf72 Silent p.P127P 0.14 TCGA-CM-5861-01 3 140178422 140178422 G T CLSTN2 Missense_Mutation p.A345S 0.35 tolerated(0.2) benign(0.001) TCGA-CM-5861-01 3 140409936 140409936 A C TRIM42 Missense_Mutation p.N663H 0.16 deleterious(0.03) benign(0.442) TCGA-CM-5861-01 3 143692406 143692406 T C C3orf58 Intron 0.37 TCGA-CM-5861-01 3 14526454 14526454 G A SLC6A6 Missense_Mutation p.R601H 0.36 tolerated(0.11) benign(0.001) TCGA-CM-5861-01 3 145911949 145911949 A G PLSCR4 3'UTR 0.21 TCGA-CM-5861-01 3 148459535 148459535 T - AGTR1 Frame_Shift_Del p.F239Lfs*3 0.23 TCGA-CM-5861-01 3 149686267 149686267 G A PFN2 Missense_Mutation p.A68V 0.21 deleterious(0) benign(0.106) TCGA-CM-5861-01 3 150460378 150460378 G A SIAH2 Silent p.C175C 0.33 TCGA-CM-5861-01 3 151156362 151156362 T C IGSF10 Missense_Mutation p.Y1996C 0.11 deleterious(0) probably_damaging(0.976) TCGA-CM-5861-01 3 154055970 154055970 T C GPR149 Missense_Mutation p.T572A 0.38 deleterious(0) probably_damaging(0.996) TCGA-CM-5861-01 3 154146477 154146477 G A GPR149 Missense_Mutation p.R310C 0.28 deleterious(0) probably_damaging(0.993) TCGA-CM-5861-01 3 155571815 155571815 G - SLC33A1 5'UTR 0.37 TCGA-CM-5861-01 3 15563061 15563061 C T COLQ Silent p.P24P 0.32 TCGA-CM-5861-01 3 158384410 158384410 A G LXN 3'UTR 0.31 TCGA-CM-5861-01 3 159609960 159609960 G A IQCJ-SCHIP1 Missense_Mutation p.D541N 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-CM-5861-01 3 165547426 165547426 G A BCHE Missense_Mutation p.H466Y 0.20 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 3 169644955 169644955 G A SAMD7 Missense_Mutation p.R302Q 0.36 tolerated(0.38) benign(0.001) TCGA-CM-5861-01 3 169998104 169998104 T A PRKCI Nonsense_Mutation p.Y265* 0.05 TCGA-CM-5861-01 3 172353835 172353835 A G NCEH1 Silent p.H200H 0.13 TCGA-CM-5861-01 3 172478055 172478055 T C ECT2 Splice_Site p.X228_splice 0.37 TCGA-CM-5861-01 3 174951978 174951978 C T NAALADL2 Missense_Mutation p.A268V 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-CM-5861-01 3 175473077 175473077 A G NAALADL2 Missense_Mutation p.Q687R 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CM-5861-01 3 176743145 176743145 C A TBL1XR1 3'UTR 0.35 TCGA-CM-5861-01 3 179052260 179052260 T - ZNF639 3'UTR 0.20 TCGA-CM-5861-01 3 180326619 180326619 T - TTC14 Intron 0.25 TCGA-CM-5861-01 3 182635821 182635821 G A ATP11B Missense_Mutation p.A1155T 0.13 tolerated_low_confidence(0.58) benign(0) TCGA-CM-5861-01 3 183515812 183515812 C T YEATS2 Nonsense_Mutation p.Q1067* 0.32 TCGA-CM-5861-01 3 18391148 18391148 C T SATB1 Silent p.Q634Q 0.28 TCGA-CM-5861-01 3 183955189 183955189 G A VWA5B2 Missense_Mutation p.R570H 0.42 tolerated(0.2) benign(0.001) TCGA-CM-5861-01 3 184079260 184079260 G A CLCN2 Missense_Mutation p.A3V 0.27 tolerated_low_confidence(0.07) unknown(0) TCGA-CM-5861-01 3 185769850 185769850 C T ETV5 Missense_Mutation p.R427H 0.29 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 3 186272138 186272138 G T TBCCD1 Silent p.P483P 0.32 TCGA-CM-5861-01 3 186303240 186303240 G A DNAJB11 3'UTR 0.28 TCGA-CM-5861-01 3 187447235 187447236 - G BCL6 Frame_Shift_Ins p.N320Qfs*11 0.21 TCGA-CM-5861-01 3 188592277 188592277 C T LPP 3'UTR 0.41 TCGA-CM-5861-01 3 190120217 190120217 C T CLDN16 Missense_Mutation p.A139V 0.42 deleterious(0) possibly_damaging(0.705) TCGA-CM-5861-01 3 192516092 192516093 - A MB21D2 3'UTR 0.29 TCGA-CM-5861-01 3 194409080 194409081 GA - FAM43A 3'UTR 0.38 TCGA-CM-5861-01 3 195452832 195452832 C T MUC20 Missense_Mutation p.S453L 0.17 tolerated(0.78) unknown(0) TCGA-CM-5861-01 3 196613477 196613477 A G SENP5 Silent p.G475G 0.11 TCGA-CM-5861-01 3 196674359 196674360 - G PIGZ Frame_Shift_Ins p.R470Pfs*22 0.33 TCGA-CM-5861-01 3 197273299 197273299 G T BDH1 Missense_Mutation p.L6I 0.24 tolerated_low_confidence(0.13) benign(0.009) TCGA-CM-5861-01 3 19947137 19947137 G T EFHB Missense_Mutation p.L465I 0.37 deleterious(0.04) benign(0.221) TCGA-CM-5861-01 3 23541134 23541134 G A UBE2E2 Missense_Mutation p.R88K 0.29 tolerated(0.16) benign(0.127) TCGA-CM-5861-01 3 25665077 25665077 G A TOP2B Missense_Mutation p.P881S 0.36 deleterious(0.01) possibly_damaging(0.749) TCGA-CM-5861-01 3 28361087 28361088 - A CMC1 Frame_Shift_Ins p.R98Kfs*21 0.27 TCGA-CM-5861-01 3 31658470 31658470 C G STT3B Missense_Mutation p.D342E 0.39 tolerated(0.15) benign(0.008) TCGA-CM-5861-01 3 31774802 31774802 C T OSBPL10 Missense_Mutation p.A348T 0.09 tolerated(0.29) benign(0.101) TCGA-CM-5861-01 3 3888030 3888030 A C LRRN1 Missense_Mutation p.T569P 0.19 tolerated(0.13) benign(0.019) TCGA-CM-5861-01 3 38938628 38938628 A G SCN11A Missense_Mutation p.L704P 0.34 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 3 39186546 39186546 C T CSRNP1 Missense_Mutation p.R136Q 0.34 deleterious(0.03) benign(0.283) TCGA-CM-5861-01 3 40085745 40085745 C T MYRIP Silent p.C105C 0.44 TCGA-CM-5861-01 3 40502923 40502923 G A RPL14 Missense_Mutation p.A76T 0.14 deleterious(0) probably_damaging(0.996) TCGA-CM-5861-01 3 41756950 41756950 C T ULK4 Missense_Mutation p.V856I 0.21 tolerated(0.12) benign(0.015) TCGA-CM-5861-01 3 42730496 42730496 C T KLHL40 Silent p.T519T 0.30 TCGA-CM-5861-01 3 42774387 42774387 G T CCDC13 Silent p.T529T 0.09 TCGA-CM-5861-01 3 43389910 43389910 G A SNRK Missense_Mutation p.R720Q 0.35 deleterious_low_confidence(0.02) benign(0.066) TCGA-CM-5861-01 3 4354769 4354769 T - SETMAR Frame_Shift_Del p.F116Lfs*58 0.23 TCGA-CM-5861-01 3 44308549 44308550 - A TOPAZ1 Frame_Shift_Ins p.P1029Tfs*26 0.16 TCGA-CM-5861-01 3 44496800 44496800 C T ZNF445 Missense_Mutation p.R81H 0.35 deleterious(0) possibly_damaging(0.812) TCGA-CM-5861-01 3 44636243 44636243 A - ZNF660 Frame_Shift_Del p.V189Ffs*41 0.27 TCGA-CM-5861-01 3 44763369 44763369 A G ZNF502 Missense_Mutation p.K354E 0.10 tolerated(0.22) benign(0.381) TCGA-CM-5861-01 3 44795024 44795024 C T KIAA1143 Missense_Mutation p.D92N 0.39 deleterious(0.04) benign(0.038) TCGA-CM-5861-01 3 44843299 44843299 A - KIF15 Frame_Shift_Del p.K449Rfs*10 0.27 TCGA-CM-5861-01 3 45780364 45780364 C T SACM1L Missense_Mutation p.A523V 0.37 tolerated(0.38) benign(0.016) TCGA-CM-5861-01 3 4669561 4669561 A G ITPR1 Missense_Mutation p.H93R 0.37 tolerated(0.24) probably_damaging(0.941) TCGA-CM-5861-01 3 47042671 47042671 T C NBEAL2 Splice_Site p.X1495_splice 0.36 TCGA-CM-5861-01 3 47088044 47088044 A G SETD2 Missense_Mutation p.V2344A 0.29 tolerated(0.08) probably_damaging(0.951) TCGA-CM-5861-01 3 47374763 47374763 C T KLHL18 Silent p.D239D 0.36 TCGA-CM-5861-01 3 47460153 47460153 C T SCAP Silent p.T707T 0.36 TCGA-CM-5861-01 3 48600362 48600362 G A UCN2 Missense_Mutation p.R66C 0.40 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-CM-5861-01 3 48612871 48612871 G - COL7A1 Frame_Shift_Del p.P2029Lfs*177 0.33 TCGA-CM-5861-01 3 49152390 49152390 A G USP19 Splice_Site p.X725_splice 0.28 TCGA-CM-5861-01 3 49210527 49210527 C T KLHDC8B Missense_Mutation p.R109C 0.23 deleterious(0) benign(0.173) TCGA-CM-5861-01 3 49294050 49294050 G A CCDC36 Missense_Mutation p.V374I 0.41 tolerated(1) benign(0.001) TCGA-CM-5861-01 3 49755937 49755937 G A AMIGO3 Missense_Mutation p.A321V 0.35 tolerated(0.5) benign(0.256) TCGA-CM-5861-01 3 49934839 49934839 A G MST1R Missense_Mutation p.L686P 0.42 deleterious(0) probably_damaging(0.992) TCGA-CM-5861-01 3 50220097 50220097 G A SEMA3F Missense_Mutation p.E262K 0.29 tolerated(0.09) benign(0.023) TCGA-CM-5861-01 3 51430507 51430507 C T RBM15B Silent p.R559R 0.50 TCGA-CM-5861-01 3 51989833 51989833 C T GPR62 Silent p.C55C 0.44 TCGA-CM-5861-01 3 52265509 52265509 T - TWF2 Frame_Shift_Del p.K110Rfs*16 0.29 TCGA-CM-5861-01 3 52537088 52537088 C T STAB1 Silent p.C219C 0.43 TCGA-CM-5861-01 3 52823843 52823843 G T ITIH1 Missense_Mutation p.R765M 0.14 tolerated(0.13) benign(0.101) TCGA-CM-5861-01 3 53125730 53125730 C - RFT1 3'UTR 0.55 TCGA-CM-5861-01 3 57310726 57310726 C T ASB14 Missense_Mutation p.R539H 0.35 deleterious(0) possibly_damaging(0.841) TCGA-CM-5861-01 3 57563112 57563112 A G ARF4 Silent p.G87G 0.35 TCGA-CM-5861-01 3 58089787 58089788 - G FLNB Frame_Shift_Ins p.H532Tfs*9 0.30 TCGA-CM-5861-01 3 58631256 58631256 A G FAM3D Silent p.T81T 0.26 TCGA-CM-5861-01 3 69230098 69230098 G A FRMD4B Silent p.L935L 0.45 TCGA-CM-5861-01 3 73433092 73433092 C A PDZRN3 Silent p.A875A 0.44 TCGA-CM-5861-01 3 74313501 74313501 T - CNTN3 3'UTR 0.23 TCGA-CM-5861-01 3 77614239 77614239 C T ROBO2 Missense_Mutation p.P622L 0.38 deleterious(0) probably_damaging(0.929) TCGA-CM-5861-01 3 78706346 78706346 A T ROBO1 Missense_Mutation p.I839N 0.39 deleterious(0) probably_damaging(0.994) TCGA-CM-5861-01 3 87310421 87310421 A G POU1F1 Splice_Site p.X248_splice 0.10 TCGA-CM-5861-01 3 93781896 93781897 - T NSUN3 5'UTR 0.35 TCGA-CM-5861-01 3 9726923 9726923 G T MTMR14 Missense_Mutation p.G386W 0.19 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 3 97888064 97888064 T C OR5H15 Missense_Mutation p.V174A 0.12 deleterious(0) possibly_damaging(0.515) TCGA-CM-5861-01 3 9987956 9987956 C T PRRT3 Silent p.K967K 0.13 TCGA-CM-5861-01 3 9991286 9991286 G T PRRT3 Missense_Mutation p.L172M 0.45 tolerated_low_confidence(0.05) benign(0.353) TCGA-CM-5861-01 4 100134816 100134816 T C ADH6 Missense_Mutation p.E70G 0.30 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 4 10079460 10079460 C T WDR1 Missense_Mutation p.A496T 0.36 tolerated(0.07) benign(0.437) TCGA-CM-5861-01 4 1016229 1016229 C T FGFRL1 Silent p.G106G 0.32 TCGA-CM-5861-01 4 103189147 103189147 G A SLC39A8 Silent p.C310C 0.41 TCGA-CM-5861-01 4 103718443 103718443 T C UBE2D3 3'Flank 0.48 TCGA-CM-5861-01 4 1208228 1208228 G A CTBP1 Missense_Mutation p.R266W 0.38 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 4 134071629 134071629 G A PCDH10 Missense_Mutation p.V112M 0.56 deleterious(0) probably_damaging(0.933) TCGA-CM-5861-01 4 134072823 134072823 A G PCDH10 Missense_Mutation p.M510V 0.33 deleterious(0.05) probably_damaging(0.981) TCGA-CM-5861-01 4 135121598 135121598 A G PABPC4L Missense_Mutation p.Y251H 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5861-01 4 13617033 13617033 A G BOD1L1 Silent p.A154A 0.33 TCGA-CM-5861-01 4 138442713 138442713 G T PCDH18 Missense_Mutation p.Q960K 0.24 tolerated(0.48) benign(0.01) TCGA-CM-5861-01 4 141489046 141489046 C T UCP1 Missense_Mutation p.R71Q 0.28 tolerated(0.05) benign(0.197) TCGA-CM-5861-01 4 141583123 141583123 T C TBC1D9 Missense_Mutation p.N576S 0.32 tolerated(0.6) probably_damaging(0.996) TCGA-CM-5861-01 4 142143523 142143523 A - ZNF330 5'UTR p.M1? 0.21 TCGA-CM-5861-01 4 145568108 145568108 T C HHIP Splice_Site p.X93_splice 0.43 TCGA-CM-5861-01 4 147561456 147561456 G A POU4F2 Silent p.P242P 0.21 TCGA-CM-5861-01 4 147755034 147755037 AGTA - TTC29 Frame_Shift_Del p.Y300Vfs*20 0.44 TCGA-CM-5861-01 4 151773474 151773474 G T LRBA Missense_Mutation p.Q1130K 0.20 tolerated_low_confidence(0.6) benign(0.018) TCGA-CM-5861-01 4 152570781 152570781 C A FAM160A1 Missense_Mutation p.P530T 0.15 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 4 153793644 153793644 A G ARFIP1 Silent p.L113L 0.17 TCGA-CM-5861-01 4 156631692 156631692 A G GUCY1A3 Splice_Site p.X126_splice 0.37 TCGA-CM-5861-01 4 159092251 159092251 G A FAM198B Missense_Mutation p.P93S 0.32 tolerated(0.07) possibly_damaging(0.803) TCGA-CM-5861-01 4 159092358 159092358 C A FAM198B Missense_Mutation p.R57M 0.44 deleterious(0.03) possibly_damaging(0.702) TCGA-CM-5861-01 4 15982081 15982081 T C PROM1 Missense_Mutation p.Y818C 0.39 deleterious(0) probably_damaging(0.995) TCGA-CM-5861-01 4 1697998 1697998 A G SLBP Missense_Mutation p.I187T 0.20 deleterious(0) probably_damaging(0.994) TCGA-CM-5861-01 4 170913142 170913142 T A MFAP3L Missense_Mutation p.K206M 0.28 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 4 17710542 17710542 G A FAM184B Silent p.Y289Y 0.37 TCGA-CM-5861-01 4 177248357 177248357 T C SPCS3 Silent p.G113G 0.36 TCGA-CM-5861-01 4 184241693 184241693 G A CLDN22 5'UTR 0.37 TCGA-CM-5861-01 4 184368310 184368310 G A CDKN2AIP Silent p.L491L 0.11 TCGA-CM-5861-01 4 186380409 186380409 T - CCDC110 Frame_Shift_Del p.V445* 0.23 TCGA-CM-5861-01 4 187630303 187630303 G A FAT1 Missense_Mutation p.R227C 0.33 probably_damaging(1) TCGA-CM-5861-01 4 189018499 189018499 T G TRIML2 Missense_Mutation p.N158T 0.34 deleterious(0.01) benign(0.282) TCGA-CM-5861-01 4 2275865 2275865 C A ZFYVE28 Missense_Mutation p.Q710H 0.34 tolerated(0.56) benign(0.308) TCGA-CM-5861-01 4 2339179 2339179 T C ZFYVE28 Missense_Mutation p.Y189C 0.19 deleterious(0.03) probably_damaging(0.968) TCGA-CM-5861-01 4 26491001 26491001 C T CCKAR Missense_Mutation p.R73Q 0.35 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 4 3241618 3241618 C T HTT Silent p.D3087D 0.28 TCGA-CM-5861-01 4 3534050 3534050 G A LRPAP1 Silent p.S30S 0.26 TCGA-CM-5861-01 4 36230755 36230755 C T ARAP2 Silent p.P118P 0.31 TCGA-CM-5861-01 4 39293292 39293292 G A RFC1 Silent p.G1046G 0.31 TCGA-CM-5861-01 4 39471677 39471677 T C LIAS Missense_Mutation p.L259P 0.29 deleterious(0) probably_damaging(0.988) TCGA-CM-5861-01 4 41985067 41985067 T C DCAF4L1 3'UTR 0.35 TCGA-CM-5861-01 4 4275372 4275372 T - LYAR Frame_Shift_Del p.K286Rfs*2 0.32 TCGA-CM-5861-01 4 44450067 44450067 G A KCTD8 Silent p.D158D 0.15 TCGA-CM-5861-01 4 44688591 44688591 A G GUF1 Missense_Mutation p.R267G 0.23 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 4 47033491 47033491 G A GABRB1 5'UTR 0.50 TCGA-CM-5861-01 4 47408707 47408707 A G GABRB1 Missense_Mutation p.T282A 0.15 deleterious(0) probably_damaging(0.996) TCGA-CM-5861-01 4 52899771 52899771 A C SGCB Silent p.R23R 0.16 TCGA-CM-5861-01 4 52943096 52943096 T C SPATA18 Missense_Mutation p.S304P 0.36 deleterious(0.01) possibly_damaging(0.484) TCGA-CM-5861-01 4 55524150 55524150 A G KIT 5'UTR 0.09 TCGA-CM-5861-01 4 56322385 56322385 C A CLOCK Missense_Mutation p.R292M 0.10 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 4 56325312 56325312 C T CLOCK Intron 0.37 TCGA-CM-5861-01 4 56768635 56768635 A - EXOC1 Frame_Shift_Del p.G824Vfs*2 0.31 TCGA-CM-5861-01 4 57261295 57261295 A - PPAT 3'UTR 0.48 TCGA-CM-5861-01 4 57830572 57830572 C A NOA1 Missense_Mutation p.G629C 0.19 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 4 5961254 5961254 C T C4orf50 Missense_Mutation p.G701R 0.29 tolerated(0.12) probably_damaging(0.975) TCGA-CM-5861-01 4 68370947 68370947 C T CENPC Missense_Mutation p.D703N 0.33 tolerated(0.18) benign(0.048) TCGA-CM-5861-01 4 69179995 69179995 G A YTHDC1 Missense_Mutation p.A669V 0.34 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-CM-5861-01 4 71672371 71672371 T G RUFY3 Missense_Mutation p.S620A 0.28 tolerated(0.16) benign(0.006) TCGA-CM-5861-01 4 74361105 74361105 A G AFM Missense_Mutation p.N383D 0.13 tolerated(1) benign(0.007) TCGA-CM-5861-01 4 74847239 74847239 T C PF4 Missense_Mutation p.D38G 0.39 tolerated(0.07) benign(0.015) TCGA-CM-5861-01 4 74920091 74920091 C T PPBPP2 RNA 0.56 TCGA-CM-5861-01 4 76703899 76703900 - T USO1 Frame_Shift_Ins p.K253* 0.22 TCGA-CM-5861-01 4 77272147 77272147 A G CCDC158 Splice_Site p.X888_splice 0.40 TCGA-CM-5861-01 4 79455603 79455603 A C FRAS1 Missense_Mutation p.R3642S 0.26 benign(0.316) TCGA-CM-5861-01 4 8098969 8098969 C T ABLIM2 Silent p.R65R 0.36 TCGA-CM-5861-01 4 81866027 81866027 C T C4orf22 Silent p.A197A 0.37 TCGA-CM-5861-01 4 8307812 8307812 G A HTRA3 Silent p.R437R 0.15 TCGA-CM-5861-01 4 83279969 83279969 A G HNRNPD Missense_Mutation p.M155T 0.34 deleterious(0.01) benign(0.01) TCGA-CM-5861-01 4 84383411 84383411 A - MRPS18C 3'UTR 0.50 TCGA-CM-5861-01 4 85419345 85419345 T C NKX6-1 Missense_Mutation p.S13G 0.48 tolerated(0.36) benign(0.153) TCGA-CM-5861-01 4 86330 86330 C A Z95704.2 RNA 0.39 TCGA-CM-5861-01 4 88344059 88344059 T C NUDT9 Translation_Start_Site p.M1? 0.37 deleterious_low_confidence(0) benign(0.367) TCGA-CM-5861-01 4 88533549 88533549 A G DSPP Missense_Mutation p.N71D 0.36 benign(0.016) TCGA-CM-5861-01 4 88536560 88536560 G A DSPP Missense_Mutation p.D916N 0.37 unknown(0) TCGA-CM-5861-01 4 90035192 90035192 T C TIGD2 Missense_Mutation p.F356S 0.37 tolerated(0.08) probably_damaging(0.995) TCGA-CM-5861-01 4 94436427 94436427 G A GRID2 Silent p.A686A 0.32 TCGA-CM-5861-01 4 95539237 95539237 T G PDLIM5 Missense_Mutation p.S364A 0.31 tolerated(0.16) benign(0.013) TCGA-CM-5861-01 4 9784012 9784012 A G DRD5 Missense_Mutation p.D120G 0.10 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 4 9785349 9785349 G C DRD5 3'UTR 0.22 TCGA-CM-5861-01 5 100238742 100238742 C T ST8SIA4 5'UTR 0.48 TCGA-CM-5861-01 5 102260673 102260673 A C PAM Missense_Mutation p.E123D 0.34 tolerated(0.18) possibly_damaging(0.704) TCGA-CM-5861-01 5 10239183 10239183 C T FAM173B Missense_Mutation p.R101H 0.23 deleterious(0.03) possibly_damaging(0.751) TCGA-CM-5861-01 5 10263328 10263328 G A CCT5 Missense_Mutation p.G467D 0.14 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 5 10402702 10402702 C T MARCH6 Silent p.L394L 0.36 TCGA-CM-5861-01 5 110428109 110428109 T C WDR36 Silent p.C41C 0.48 TCGA-CM-5861-01 5 112090717 112090717 A G APC Missense_Mutation p.M44V 0.17 benign(0.04) TCGA-CM-5861-01 5 112823987 112823987 C T MCC Missense_Mutation p.R42H 0.37 deleterious_low_confidence(0.01) benign(0.361) TCGA-CM-5861-01 5 112870043 112870043 T C YTHDC2 Missense_Mutation p.V295A 0.36 deleterious(0) possibly_damaging(0.466) TCGA-CM-5861-01 5 115782939 115782939 C T SEMA6A Silent p.T821T 0.27 TCGA-CM-5861-01 5 122337779 122337779 T C SNX24 Intron 0.23 TCGA-CM-5861-01 5 131607853 131607853 G A PDLIM4 Silent p.A308A 0.40 TCGA-CM-5861-01 5 131676363 131676363 A C SLC22A4 Missense_Mutation p.E517A 0.40 deleterious(0) possibly_damaging(0.833) TCGA-CM-5861-01 5 131722731 131722731 C - SLC22A5 Frame_Shift_Del p.R282Dfs*14 0.17 TCGA-CM-5861-01 5 132270550 132270550 T G AFF4 Missense_Mutation p.R69S 0.31 deleterious(0.03) benign(0.371) TCGA-CM-5861-01 5 133634349 133634349 A - CDKL3 Frame_Shift_Del p.F591Sfs*9 0.41 TCGA-CM-5861-01 5 134192662 134192662 T - C5orf24 3'UTR 0.33 TCGA-CM-5861-01 5 134194588 134194588 T - C5orf24 3'UTR 0.15 TCGA-CM-5861-01 5 134724706 134724706 C - H2AFY Frame_Shift_Del p.R27Gfs*30 0.37 TCGA-CM-5861-01 5 13810303 13810303 C T DNAH5 Missense_Mutation p.A2492T 0.42 benign(0.002) TCGA-CM-5861-01 5 140176217 140176217 G A PCDHA2 Silent p.L556L 0.38 TCGA-CM-5861-01 5 140203783 140203783 T - PCDHA5 Intron 0.25 TCGA-CM-5861-01 5 140209252 140209252 G A PCDHA6 Missense_Mutation p.E526K 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CM-5861-01 5 140222293 140222293 T C PCDHA8 Missense_Mutation p.F463L 0.26 tolerated_low_confidence(0.09) benign(0.178) TCGA-CM-5861-01 5 140263515 140263515 C T PCDHA13 Silent p.F554F 0.29 TCGA-CM-5861-01 5 140475415 140475415 G A PCDHB2 Silent p.P347P 0.42 TCGA-CM-5861-01 5 140476253 140476253 C T PCDHB2 Missense_Mutation p.R627C 0.41 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-CM-5861-01 5 140481490 140481490 T C PCDHB3 Silent p.I419I 0.34 TCGA-CM-5861-01 5 140573723 140573723 C T PCDHB10 Missense_Mutation p.A533V 0.23 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-CM-5861-01 5 140588662 140588662 G A PCDHB12 Silent p.S61S 0.43 TCGA-CM-5861-01 5 140626762 140626762 C T PCDHB15 Missense_Mutation p.P539L 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CM-5861-01 5 140711048 140711048 C G PCDHGA1 Missense_Mutation p.A266G 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-5861-01 5 140750952 140750952 T G PCDHGB3 Missense_Mutation p.C331G 0.35 deleterious(0) possibly_damaging(0.846) TCGA-CM-5861-01 5 140755403 140755403 G A PCDHGA6 Missense_Mutation p.G585S 0.11 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-CM-5861-01 5 140797550 140797550 G T PCDHGB7 Missense_Mutation p.A42S 0.40 tolerated(0.38) benign(0.257) TCGA-CM-5861-01 5 140857071 140857071 A G PCDHGC3 Missense_Mutation p.D463G 0.33 tolerated(0.17) benign(0.226) TCGA-CM-5861-01 5 141318090 141318090 G A KIAA0141 Silent p.P438P 0.19 TCGA-CM-5861-01 5 142586763 142586763 C - ARHGAP26 Frame_Shift_Del p.P665Rfs*135 0.32 TCGA-CM-5861-01 5 147718042 147718042 T C SPINK9 Missense_Mutation p.V30A 0.32 tolerated(0.05) benign(0.024) TCGA-CM-5861-01 5 147719301 147719301 T - SPINK9 3'UTR 0.16 TCGA-CM-5861-01 5 148808540 148808540 C A MIR143 RNA 0.22 TCGA-CM-5861-01 5 149225389 149225389 C T PPARGC1B Silent p.G961G 0.41 TCGA-CM-5861-01 5 149997927 149997927 A G SYNPO 5'UTR 0.12 TCGA-CM-5861-01 5 15936860 15936860 G A FBXL7 Silent p.K347K 0.50 TCGA-CM-5861-01 5 159849397 159849397 G - PTTG1 Frame_Shift_Del p.S28Lfs*8 0.24 TCGA-CM-5861-01 5 168678455 168678455 T A SLIT3 Missense_Mutation p.D69V 0.27 deleterious(0) benign(0.419) TCGA-CM-5861-01 5 174156216 174156216 C T MSX2 Missense_Mutation p.P145L 0.41 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 5 176823743 176823743 C T SLC34A1 Missense_Mutation p.A395V 0.18 tolerated(0.22) benign(0.003) TCGA-CM-5861-01 5 176824970 176824970 A G SLC34A1 Missense_Mutation p.M535V 0.25 tolerated(0.13) benign(0.008) TCGA-CM-5861-01 5 177636376 177636376 C T HNRNPAB Nonsense_Mutation p.Q239* 0.35 TCGA-CM-5861-01 5 178139470 178139470 A G ZNF354A Missense_Mutation p.V470A 0.37 tolerated(0.26) possibly_damaging(0.867) TCGA-CM-5861-01 5 178459963 178459963 T C ZNF879 Silent p.H338H 0.17 TCGA-CM-5861-01 5 178459979 178459979 T C ZNF879 Missense_Mutation p.Y344H 0.23 deleterious(0) probably_damaging(0.988) TCGA-CM-5861-01 5 178552090 178552090 C T ADAMTS2 Missense_Mutation p.D948N 0.36 tolerated(0.78) benign(0.02) TCGA-CM-5861-01 5 179225582 179225584 GAA - MGAT4B In_Frame_Del p.F466del 0.33 TCGA-CM-5861-01 5 179320339 179320339 C T TBC1D9B Missense_Mutation p.E236K 0.49 deleterious(0.01) possibly_damaging(0.887) TCGA-CM-5861-01 5 180420049 180420049 C T BTNL3 Missense_Mutation p.R96C 0.71 tolerated(0.09) possibly_damaging(0.803) TCGA-CM-5861-01 5 180472524 180472524 A T BTNL9 Missense_Mutation p.K12M 0.29 tolerated_low_confidence(0.08) benign(0.168) TCGA-CM-5861-01 5 19473527 19473527 A G CDH18 Silent p.P727P 0.34 TCGA-CM-5861-01 5 24535224 24535224 G - CDH10 Frame_Shift_Del p.Q271Rfs*34 0.27 TCGA-CM-5861-01 5 31799709 31799709 C T PDZD2 Silent p.C118C 0.15 TCGA-CM-5861-01 5 32397360 32397360 G A ZFR Missense_Mutation p.H600Y 0.35 deleterious(0) unknown(0) TCGA-CM-5861-01 5 33441090 33441090 G A TARS 5'UTR 0.50 TCGA-CM-5861-01 5 38954913 38954913 A G RICTOR Missense_Mutation p.V887A 0.39 tolerated(0.22) probably_damaging(0.995) TCGA-CM-5861-01 5 39288882 39288882 A G C9 Missense_Mutation p.C530R 0.38 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 5 39311473 39311473 T - C9 Frame_Shift_Del p.M293Cfs*5 0.14 TCGA-CM-5861-01 5 41005740 41005740 C T MROH2B Missense_Mutation p.A1253T 0.27 deleterious(0.04) possibly_damaging(0.519) TCGA-CM-5861-01 5 42759279 42759279 A G CCDC152 Missense_Mutation p.K19R 0.25 tolerated(0.12) probably_damaging(0.999) TCGA-CM-5861-01 5 52243279 52243279 A G ITGA1 Silent p.L1161L 0.13 TCGA-CM-5861-01 5 524282 524282 C T SLC9A3 Silent p.V52V 0.27 TCGA-CM-5861-01 5 52781591 52781591 A - FST Intron 0.11 TCGA-CM-5861-01 5 54436176 54436176 C T CDC20B Missense_Mutation p.M182I 0.16 tolerated(0.17) benign(0.038) TCGA-CM-5861-01 5 54529100 54529104 GGGCA - CCNO Frame_Shift_Del p.L83Rfs*51 0.53 TCGA-CM-5861-01 5 54720706 54720706 A G SKIV2L2 3'UTR 0.42 TCGA-CM-5861-01 5 55212506 55212506 T C IL31RA Missense_Mutation p.V618A 0.14 tolerated(0.71) benign(0.228) TCGA-CM-5861-01 5 63509514 63509514 G T RNF180 Missense_Mutation p.D121Y 0.34 deleterious(0) benign(0.407) TCGA-CM-5861-01 5 66460372 66460372 A - MAST4 Frame_Shift_Del p.K1789Sfs*10 0.30 TCGA-CM-5861-01 5 678027 678027 G A TPPP Missense_Mutation p.A50V 0.38 tolerated(0.13) possibly_damaging(0.761) TCGA-CM-5861-01 5 68470802 68470802 C G CCNB1 Missense_Mutation p.D268E 0.13 deleterious(0) possibly_damaging(0.854) TCGA-CM-5861-01 5 68530736 68530736 T C CDK7 5'UTR 0.15 TCGA-CM-5861-01 5 68849509 68849509 C T OCLN 3'UTR 0.35 TCGA-CM-5861-01 5 71757213 71757213 C A ZNF366 Missense_Mutation p.K37N 0.36 deleterious_low_confidence(0) benign(0.372) TCGA-CM-5861-01 5 72183005 72183005 T C TNPO1 Missense_Mutation p.V420A 0.35 tolerated(0.54) benign(0.002) TCGA-CM-5861-01 5 72858789 72858789 T C ANKRA2 5'UTR 0.33 TCGA-CM-5861-01 5 74016280 74016280 T C HEXB Missense_Mutation p.I482T 0.14 deleterious(0) probably_damaging(0.94) TCGA-CM-5861-01 5 74680502 74680502 C T COL4A3BP Missense_Mutation p.A613T 0.33 deleterious(0.01) benign(0.438) TCGA-CM-5861-01 5 76028978 76028978 C T F2R Missense_Mutation p.R310W 0.38 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 5 7773104 7773104 C A ADCY2 Missense_Mutation p.N758K 0.31 deleterious(0.01) benign(0.231) TCGA-CM-5861-01 5 7878289 7878289 G A MTRR Missense_Mutation p.V239M 0.38 tolerated(0.09) benign(0.049) TCGA-CM-5861-01 5 80559397 80559397 T C CKMT2 Missense_Mutation p.Y368H 0.35 deleterious(0.02) probably_damaging(0.942) TCGA-CM-5861-01 5 81474358 81474358 C A ATG10 Nonsense_Mutation p.C135* 0.24 TCGA-CM-5861-01 5 85578426 85578426 T C NBPF22P RNA 0.29 TCGA-CM-5861-01 5 88056849 88056849 T - MEF2C Frame_Shift_Del p.I138Lfs*8 0.25 TCGA-CM-5861-01 5 89940613 89940613 C A GPR98 Missense_Mutation p.P942H 0.16 probably_damaging(0.953) TCGA-CM-5861-01 5 90025462 90025462 A G GPR98 Missense_Mutation p.D3477G 0.36 benign(0.006) TCGA-CM-5861-01 5 90041514 90041514 A - GPR98 Frame_Shift_Del p.N3627Ifs*14 0.24 TCGA-CM-5861-01 5 90670854 90670854 C A ARRDC3 Missense_Mutation p.G252V 0.41 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 5 9122781 9122781 C T SEMA5A Missense_Mutation p.A590T 0.42 tolerated(0.36) benign(0.003) TCGA-CM-5861-01 5 9630024 9630024 T - TAS2R1 Frame_Shift_Del p.M41Wfs*27 0.30 TCGA-CM-5861-01 6 108066273 108066273 A G SCML4 Missense_Mutation p.F188L 0.15 deleterious(0) probably_damaging(0.919) TCGA-CM-5861-01 6 109763487 109763487 C T SMPD2 Silent p.N131N 0.10 TCGA-CM-5861-01 6 110112620 110112620 C T FIG4 Missense_Mutation p.T741M 0.29 deleterious(0.01) benign(0.31) TCGA-CM-5861-01 6 118887427 118887427 A G CEP85L Silent p.I98I 0.35 TCGA-CM-5861-01 6 123039081 123039081 A - PKIB Frame_Shift_Del p.K55Nfs*7 0.19 TCGA-CM-5861-01 6 126211844 126211844 A G NCOA7 Missense_Mutation p.K662E 0.14 deleterious(0) possibly_damaging(0.76) TCGA-CM-5861-01 6 126211858 126211858 A C NCOA7 Silent p.P666P 0.16 TCGA-CM-5861-01 6 130425615 130425615 G A L3MBTL3 Missense_Mutation p.R594H 0.31 tolerated(0.11) possibly_damaging(0.8) TCGA-CM-5861-01 6 13206092 13206092 C T PHACTR1 Missense_Mutation p.S237L 0.38 deleterious(0.02) possibly_damaging(0.519) TCGA-CM-5861-01 6 132179844 132179844 T C ENPP1 Missense_Mutation p.V251A 0.30 tolerated(0.16) benign(0.181) TCGA-CM-5861-01 6 132649197 132649197 A G MOXD1 Missense_Mutation p.Y301H 0.33 deleterious(0) probably_damaging(0.986) TCGA-CM-5861-01 6 137814969 137814969 C T OLIG3 Silent p.A113A 0.08 TCGA-CM-5861-01 6 145157012 145157012 A G UTRN Silent p.S3254S 0.39 TCGA-CM-5861-01 6 146262867 146262867 G A SHPRH Silent p.R794R 0.41 TCGA-CM-5861-01 6 150240236 150240236 C A RAET1G Nonsense_Mutation p.G192* 0.34 TCGA-CM-5861-01 6 151281474 151281474 G A MTHFD1L Missense_Mutation p.A623T 0.31 tolerated(0.39) benign(0.005) TCGA-CM-5861-01 6 152265466 152265466 G T ESR1 Missense_Mutation p.A307S 0.11 tolerated(0.56) benign(0.011) TCGA-CM-5861-01 6 155145378 155145378 C T SCAF8 Missense_Mutation p.A646V 0.44 tolerated(0.11) possibly_damaging(0.543) TCGA-CM-5861-01 6 15524780 15524784 TTCTC - DTNBP1 Frame_Shift_Del p.E262Hfs*10 0.33 TCGA-CM-5861-01 6 159457091 159457091 A G TAGAP Missense_Mutation p.L655P 0.09 tolerated(0.15) benign(0.001) TCGA-CM-5861-01 6 160221324 160221324 G A PNLDC1 5'UTR 0.35 TCGA-CM-5861-01 6 160224995 160224995 A C PNLDC1 Splice_Site p.X72_splice 0.11 TCGA-CM-5861-01 6 160327993 160327993 T C MAS1 Silent p.D2D 0.28 TCGA-CM-5861-01 6 160555146 160555146 G A SLC22A1 Silent p.L276L 0.29 TCGA-CM-5861-01 6 161032594 161032594 G A LPA Missense_Mutation p.A868V 0.27 tolerated(0.22) possibly_damaging(0.661) TCGA-CM-5861-01 6 166743006 166743006 A G SFT2D1 Silent p.A74A 0.18 TCGA-CM-5861-01 6 168396638 168396638 C T KIF25 5'Flank 0.27 TCGA-CM-5861-01 6 170064361 170064361 C A WDR27 Missense_Mutation p.D269Y 0.20 deleterious(0) possibly_damaging(0.861) TCGA-CM-5861-01 6 17834191 17834191 C T KIF13A Splice_Site p.X422_splice 0.32 TCGA-CM-5861-01 6 18122225 18122226 - A NHLRC1 Frame_Shift_Ins p.G205Wfs*29 0.27 TCGA-CM-5861-01 6 20481454 20481455 - A E2F3 Frame_Shift_Ins p.T177Nfs*4 0.26 TCGA-CM-5861-01 6 22569882 22569882 G A HDGFL1 Silent p.P26P 0.27 TCGA-CM-5861-01 6 24687717 24687717 C T ACOT13 Intron 0.50 TCGA-CM-5861-01 6 26157187 26157187 A G HIST1H1E Missense_Mutation p.K190R 0.33 deleterious(0.01) unknown(0) TCGA-CM-5861-01 6 26158529 26158529 G T HIST1H2BD Missense_Mutation p.K44N 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.903) TCGA-CM-5861-01 6 2623857 2623857 C T C6orf195 Missense_Mutation p.G67D 0.33 tolerated_low_confidence(0.13) benign(0) TCGA-CM-5861-01 6 26370632 26370632 C - BTN3A2 Frame_Shift_Del p.Q174Nfs*31 0.12 TCGA-CM-5861-01 6 26452362 26452362 A G BTN3A3 Missense_Mutation p.E493G 0.17 tolerated(1) benign(0.002) TCGA-CM-5861-01 6 27860522 27860522 T C HIST1H2AM 3'UTR 0.12 TCGA-CM-5861-01 6 28121481 28121481 T C ZKSCAN8 Missense_Mutation p.S475P 0.09 deleterious(0.04) probably_damaging(0.948) TCGA-CM-5861-01 6 28554570 28554570 T - SCAND3 5'UTR 0.26 TCGA-CM-5861-01 6 29713466 29713466 G A Y_RNA 5'Flank 0.34 TCGA-CM-5861-01 6 30037017 30037017 G A PPP1R11 Silent p.P105P 0.35 TCGA-CM-5861-01 6 30514575 30514575 C T GNL1 Missense_Mutation p.A494T 0.39 deleterious(0) probably_damaging(0.932) TCGA-CM-5861-01 6 30611459 30611459 G T ATAT1 Intron 0.43 TCGA-CM-5861-01 6 30638601 30638601 C T DHX16 Missense_Mutation p.R192Q 0.41 tolerated(0.05) unknown(0) TCGA-CM-5861-01 6 30691854 30691854 A G TUBB Missense_Mutation p.S339G 0.39 deleterious_low_confidence(0.03) benign(0.246) TCGA-CM-5861-01 6 30916703 30916703 A - DPCR1 Frame_Shift_Del p.K156Nfs*3 0.25 TCGA-CM-5861-01 6 31080070 31080070 T C C6orf15 Splice_Site p.X23_splice 0.12 TCGA-CM-5861-01 6 31088167 31088167 C - CDSN Frame_Shift_Del p.R11Vfs*7 0.29 TCGA-CM-5861-01 6 31550132 31550132 T C LTB Silent p.L21L 0.34 TCGA-CM-5861-01 6 31734953 31734953 G - VWA7 Frame_Shift_Del p.L622* 0.43 TCGA-CM-5861-01 6 31828967 31828967 G T NEU1 Missense_Mutation p.Q205K 0.29 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 6 31833105 31833105 G A SLC44A4 Nonsense_Mutation p.R583* 0.25 TCGA-CM-5861-01 6 31923002 31923002 C T NELFE Silent p.L120L 0.30 TCGA-CM-5861-01 6 32118193 32118193 C T PRRT1 Silent p.L170L 0.29 TCGA-CM-5861-01 6 32147529 32147529 C A RNF5 Silent p.P87P 0.39 TCGA-CM-5861-01 6 32811743 32811743 G - PSMB8 Frame_Shift_Del p.R11Efs*74 0.38 TCGA-CM-5861-01 6 32825040 32825040 C T PSMB9 Silent p.G43G 0.14 TCGA-CM-5861-01 6 33218644 33218644 G C VPS52 Missense_Mutation p.L716V 0.29 tolerated(1) benign(0.002) TCGA-CM-5861-01 6 33232172 33232172 C - VPS52 Frame_Shift_Del p.L502Wfs*63 0.35 TCGA-CM-5861-01 6 33660568 33660568 G A ITPR3 Missense_Mutation p.V2508M 0.31 deleterious(0) probably_damaging(0.914) TCGA-CM-5861-01 6 33660607 33660607 G A ITPR3 Missense_Mutation p.A2521T 0.43 deleterious(0) probably_damaging(0.981) TCGA-CM-5861-01 6 34839369 34839369 C - UHRF1BP1 Frame_Shift_Del p.I1333Sfs*20 0.31 TCGA-CM-5861-01 6 3727805 3727805 G A PXDC1 Silent p.G186G 0.36 TCGA-CM-5861-01 6 37605956 37605956 C - MDGA1 Intron 0.23 TCGA-CM-5861-01 6 39693135 39693135 G A KIF6 5'UTR 0.32 TCGA-CM-5861-01 6 39869726 39869726 A G DAAM2 Silent p.L1040L 0.40 TCGA-CM-5861-01 6 39883815 39883815 T C MOCS1 Missense_Mutation p.K194E 0.40 deleterious(0.02) benign(0.17) TCGA-CM-5861-01 6 40998153 40998153 G A UNC5CL Silent p.H436H 0.13 TCGA-CM-5861-01 6 42147125 42147125 C T GUCA1A Missense_Mutation p.A197V 0.41 tolerated_low_confidence(0.34) unknown(0) TCGA-CM-5861-01 6 42665953 42665953 G A PRPH2 3'UTR 0.41 TCGA-CM-5861-01 6 43194115 43194115 C - DNPH1 Frame_Shift_Del p.G72Vfs*23 0.35 TCGA-CM-5861-01 6 44081902 44081902 C T MRPL14 Missense_Mutation p.R39Q 0.32 deleterious(0.01) probably_damaging(0.935) TCGA-CM-5861-01 6 44219919 44219921 AGA - HSP90AB1 In_Frame_Del p.K552del 0.28 TCGA-CM-5861-01 6 44371675 44371675 T - CDC5L Frame_Shift_Del p.Y225Mfs*18 0.09 TCGA-CM-5861-01 6 4716100 4716100 C T CDYL Silent p.L30L 0.26 TCGA-CM-5861-01 6 49586977 49586977 C T RHAG Missense_Mutation p.V86I 0.40 tolerated(0.95) benign(0.001) TCGA-CM-5861-01 6 53141026 53141026 T C ELOVL5 Missense_Mutation p.Y119C 0.11 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 6 53989578 53989578 G A MLIP Missense_Mutation p.R176H 0.34 tolerated(0.06) probably_damaging(0.982) TCGA-CM-5861-01 6 55039491 55039491 G A HCRTR2 Missense_Mutation p.D36N 0.33 tolerated(0.26) benign(0.27) TCGA-CM-5861-01 6 56437819 56437819 G A DST Missense_Mutation p.A1804V 0.30 possibly_damaging(0.615) TCGA-CM-5861-01 6 56516040 56516040 G A DST Missense_Mutation p.P195L 0.42 probably_damaging(0.999) TCGA-CM-5861-01 6 64431247 64431247 C T EYS Missense_Mutation p.G2894S 0.25 tolerated(0.24) benign(0.224) TCGA-CM-5861-01 6 70071027 70071027 A G BAI3 Missense_Mutation p.N1288D 0.33 tolerated(0.62) benign(0.014) TCGA-CM-5861-01 6 72006034 72006034 G A OGFRL1 Missense_Mutation p.E139K 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-CM-5861-01 6 74493490 74493490 T C CD109 Silent p.A722A 0.31 TCGA-CM-5861-01 6 75841664 75841664 A G COL12A1 Missense_Mutation p.S1977P 0.37 probably_damaging(0.927) TCGA-CM-5861-01 6 76124616 76124616 C A FILIP1 Missense_Mutation p.G25C 0.35 deleterious_low_confidence(0.05) benign(0.18) TCGA-CM-5861-01 6 82459608 82459608 A G FAM46A Missense_Mutation p.L378S 0.09 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 6 84895038 84895038 A G KIAA1009 Silent p.V510V 0.15 TCGA-CM-5861-01 6 87796149 87796149 C T CGA Missense_Mutation p.C31Y 0.35 deleterious(0) probably_damaging(0.99) TCGA-CM-5861-01 6 87968271 87968271 A G ZNF292 Missense_Mutation p.N1642D 0.12 deleterious_low_confidence(0.02) benign(0.008) TCGA-CM-5861-01 6 96652821 96652821 C T FUT9 3'UTR 0.31 TCGA-CM-5861-01 6 99286305 99286305 A G POU3F2 3'UTR 0.43 TCGA-CM-5861-01 7 100174938 100174938 T C LRCH4 Missense_Mutation p.Q418R 0.31 tolerated(0.06) benign(0.352) TCGA-CM-5861-01 7 100452360 100452360 G - SLC12A9 Frame_Shift_Del p.G102Afs*6 0.31 TCGA-CM-5861-01 7 101813751 101813751 C T CUX1 Missense_Mutation p.A261V 0.35 tolerated(1) unknown(0) TCGA-CM-5861-01 7 102087231 102087231 T C ORAI2 Missense_Mutation p.V166A 0.44 tolerated(1) probably_damaging(0.989) TCGA-CM-5861-01 7 102760123 102760123 A - NAPEPLD Frame_Shift_Del p.F281Sfs*14 0.32 TCGA-CM-5861-01 7 102953300 102953300 A G PMPCB 3'UTR 0.10 TCGA-CM-5861-01 7 107114985 107114985 A G GPR22 Silent p.L160L 0.07 TCGA-CM-5861-01 7 107615769 107615769 G A LAMB1 Missense_Mutation p.R427W 0.44 deleterious(0.02) probably_damaging(1) TCGA-CM-5861-01 7 1097769 1097769 G A GPR146 Silent p.A206A 0.36 TCGA-CM-5861-01 7 11076134 11076134 A T PHF14 Missense_Mutation p.K564N 0.08 deleterious(0) probably_damaging(0.994) TCGA-CM-5861-01 7 110765050 110765051 - A LRRN3 3'UTR 0.20 TCGA-CM-5861-01 7 112412878 112412878 A G TMEM168 Missense_Mutation p.Y502H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 7 113517787 113517787 T G PPP1R3A Missense_Mutation p.K1120N 0.37 deleterious(0) probably_damaging(0.952) TCGA-CM-5861-01 7 113518189 113518189 A G PPP1R3A Silent p.G986G 0.36 TCGA-CM-5861-01 7 113518773 113518773 T C PPP1R3A Missense_Mutation p.T792A 0.33 tolerated(0.07) benign(0.049) TCGA-CM-5861-01 7 114656029 114656029 A - MDFIC 3'UTR 0.20 TCGA-CM-5861-01 7 11582590 11582590 T - THSD7A Frame_Shift_Del p.G537Afs*4 0.19 TCGA-CM-5861-01 7 121943906 121943906 T - FEZF1 Frame_Shift_Del p.T196Rfs*3 0.19 TCGA-CM-5861-01 7 122221236 122221236 T C CADPS2 Silent p.G444G 0.29 TCGA-CM-5861-01 7 123303876 123303876 A G LMOD2 3'UTR 0.08 TCGA-CM-5861-01 7 127236057 127236057 G A FSCN3 Missense_Mutation p.D281N 0.52 tolerated(0.4) benign(0.287) TCGA-CM-5861-01 7 128487765 128487765 G A FLNC Missense_Mutation p.V1435M 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 7 128496821 128496821 C - FLNC Frame_Shift_Del p.H2471Tfs*58 0.19 TCGA-CM-5861-01 7 128530536 128530536 G A KCP RNA 0.33 TCGA-CM-5861-01 7 128612608 128612608 G A TNPO3 Silent p.L768L 0.41 TCGA-CM-5861-01 7 129395150 129395150 A T NRF1 3'UTR 0.38 TCGA-CM-5861-01 7 130007801 130007801 T C CPA5 Missense_Mutation p.Y365H 0.34 deleterious(0.01) probably_damaging(1) TCGA-CM-5861-01 7 134217792 134217792 A T AKR1B10 Missense_Mutation p.N130Y 0.18 deleterious(0.02) possibly_damaging(0.633) TCGA-CM-5861-01 7 134363845 134363845 T C BPGM 3'UTR 0.19 TCGA-CM-5861-01 7 134890690 134890690 C - WDR91 Frame_Shift_Del p.D239Tfs*139 0.31 TCGA-CM-5861-01 7 136587977 136587977 T G CHRM2 Intron 0.13 TCGA-CM-5861-01 7 139315920 139315920 C T HIPK2 Nonsense_Mutation p.W446* 0.36 TCGA-CM-5861-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-CM-5861-01 7 143091940 143091940 A T EPHA1 Silent p.T771T 0.38 TCGA-CM-5861-01 7 148523649 148523649 A G EZH2 Silent p.N268N 0.13 TCGA-CM-5861-01 7 148963806 148963806 G - ZNF783 Frame_Shift_Del p.E137Rfs*7 0.27 TCGA-CM-5861-01 7 149172393 149172393 C A ZNF746 Missense_Mutation p.Q340H 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-CM-5861-01 7 149174090 149174090 G A ZNF746 Missense_Mutation p.T254M 0.40 tolerated(0.08) benign(0.003) TCGA-CM-5861-01 7 149491938 149491938 C A SSPO RNA 0.29 TCGA-CM-5861-01 7 150093692 150093692 G T ZNF775 Missense_Mutation p.K41N 0.45 deleterious(0) possibly_damaging(0.722) TCGA-CM-5861-01 7 150164231 150164232 - A GIMAP8 Frame_Shift_Ins p.N151Kfs*12 0.33 TCGA-CM-5861-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.32 TCGA-CM-5861-01 7 150721218 150721218 G - ATG9B Frame_Shift_Del p.P98Qfs*8 0.40 TCGA-CM-5861-01 7 150763709 150763709 T C SLC4A2 Silent p.P228P 0.27 TCGA-CM-5861-01 7 150837146 150837146 C A AGAP3 Silent p.R583R 0.40 TCGA-CM-5861-01 7 150915852 150915852 G A ABCF2 Silent p.V375V 0.30 TCGA-CM-5861-01 7 151848606 151848607 TG - KMT2C Frame_Shift_Del p.Q4196Vfs*6 0.31 TCGA-CM-5861-01 7 154667738 154667738 G T DPP6 Missense_Mutation p.G669V 0.27 deleterious(0) probably_damaging(0.998) TCGA-CM-5861-01 7 16502569 16502569 G A SOSTDC1 Silent p.C75C 0.29 TCGA-CM-5861-01 7 18767345 18767345 C A HDAC9 Missense_Mutation p.A625E 0.36 tolerated(0.22) benign(0.025) TCGA-CM-5861-01 7 195663 195663 T C FAM20C Missense_Mutation p.Y239H 0.28 deleterious(0) probably_damaging(0.984) TCGA-CM-5861-01 7 23004089 23004089 T A FAM126A Missense_Mutation p.I230L 0.19 tolerated(0.37) benign(0.004) TCGA-CM-5861-01 7 23213803 23213803 T A KLHL7 Missense_Mutation p.N549K 0.05 tolerated(0.26) benign(0.001) TCGA-CM-5861-01 7 25266577 25266578 - T NPVF Frame_Shift_Ins p.N69Kfs*4 0.21 TCGA-CM-5861-01 7 26225246 26225248 ATG - NFE2L3 In_Frame_Del p.D644del 0.12 TCGA-CM-5861-01 7 27240546 27240546 C T HOXA13 5'Flank 0.24 TCGA-CM-5861-01 7 30721531 30721531 G T CRHR2 Silent p.R104R 0.27 TCGA-CM-5861-01 7 30795156 30795156 C T INMT Missense_Mutation p.L161F 0.46 deleterious(0) probably_damaging(0.97) TCGA-CM-5861-01 7 32582753 32582753 G A AVL9 Missense_Mutation p.V32I 0.37 deleterious(0.05) benign(0.387) TCGA-CM-5861-01 7 33035870 33035870 C - FKBP9 Frame_Shift_Del p.P380Lfs*6 0.31 TCGA-CM-5861-01 7 43484497 43484497 G A HECW1 Missense_Mutation p.G576S 0.38 tolerated_low_confidence(0.96) benign(0.002) TCGA-CM-5861-01 7 44882915 44882915 C T H2AFV Silent p.K14K 0.35 TCGA-CM-5861-01 7 45956823 45956823 C G IGFBP3 Missense_Mutation p.E213Q 0.36 deleterious(0.04) possibly_damaging(0.907) TCGA-CM-5861-01 7 4796763 4796763 C T FOXK1 Missense_Mutation p.R397W 0.23 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 7 48313594 48313595 - A ABCA13 Frame_Shift_Ins p.P1447Tfs*22 0.42 TCGA-CM-5861-01 7 50685804 50685804 G A GRB10 Silent p.C270C 0.26 TCGA-CM-5861-01 7 5997561 5997561 C T RSPH10B Missense_Mutation p.G253R 0.23 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 7 6369571 6369571 A G FAM220A 3'UTR 0.35 TCGA-CM-5861-01 7 70228147 70228147 C A AUTS2 Missense_Mutation p.P345H 0.26 tolerated(0.07) possibly_damaging(0.494) TCGA-CM-5861-01 7 70853283 70853283 A C WBSCR17 Missense_Mutation p.N162T 0.18 deleterious(0) possibly_damaging(0.784) TCGA-CM-5861-01 7 720252 720252 G A PRKAR1B Nonsense_Mutation p.R97* 0.37 TCGA-CM-5861-01 7 73038601 73038601 G T MLXIPL Silent p.P74P 0.36 TCGA-CM-5861-01 7 73960074 73960074 A G GTF2IRD1 Missense_Mutation p.D588G 0.11 deleterious(0.05) benign(0.007) TCGA-CM-5861-01 7 75185461 75185461 A G HIP1 Missense_Mutation p.W566R 0.32 tolerated(0.07) benign(0.001) TCGA-CM-5861-01 7 76144629 76144629 C - UPK3B 3'UTR 0.34 TCGA-CM-5861-01 7 76610345 76610345 G A UPK3B Intron 0.14 TCGA-CM-5861-01 7 81591271 81591271 A G CACNA2D1 Missense_Mutation p.Y969H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 7 82544198 82544198 G T PCLO Silent p.G4368G 0.34 TCGA-CM-5861-01 7 82580188 82580188 C T PCLO Missense_Mutation p.R3239H 0.36 unknown(0) TCGA-CM-5861-01 7 82584440 82584440 T - PCLO Frame_Shift_Del p.E1944Sfs*8 0.25 TCGA-CM-5861-01 7 82585606 82585606 A G PCLO Missense_Mutation p.F1555L 0.40 unknown(0) TCGA-CM-5861-01 7 88424191 88424191 A - C7orf62 Frame_Shift_Del p.L23Sfs*20 0.25 TCGA-CM-5861-01 7 91726523 91726523 G A AKAP9 Missense_Mutation p.R3417H 0.35 benign(0.035) TCGA-CM-5861-01 7 92733736 92733736 T A SAMD9 Missense_Mutation p.T559S 0.32 deleterious(0.01) probably_damaging(0.984) TCGA-CM-5861-01 7 94539903 94539903 T C PPP1R9A Missense_Mutation p.S160P 0.41 tolerated(0.16) probably_damaging(0.999) TCGA-CM-5861-01 7 96650132 96650132 A G DLX5 Silent p.S262S 0.25 TCGA-CM-5861-01 7 97851010 97851010 G A TECPR1 Silent p.S1040S 0.28 TCGA-CM-5861-01 7 98547077 98547077 A G TRRAP Missense_Mutation p.D1602G 0.24 benign(0.343) TCGA-CM-5861-01 8 10467079 10467079 G A RP1L1 Missense_Mutation p.A1510V 0.27 unknown(0) TCGA-CM-5861-01 8 104831715 104831715 G - RIMS2 Intron 0.16 TCGA-CM-5861-01 8 110592047 110592047 C T SYBU Missense_Mutation p.D239N 0.28 tolerated(0.25) probably_damaging(0.999) TCGA-CM-5861-01 8 11301686 11301687 - C FAM167A Frame_Shift_Ins p.Q79Afs*40 0.18 TCGA-CM-5861-01 8 113241029 113241029 A - CSMD3 Frame_Shift_Del p.F3640Lfs*61 0.36 TCGA-CM-5861-01 8 11696200 11696200 T - FDFT1 3'UTR 0.34 TCGA-CM-5861-01 8 118147562 118147562 C T SLC30A8 5'Flank 0.14 TCGA-CM-5861-01 8 12044011 12044011 G A FAM86B1 Nonsense_Mutation p.R164* 0.10 TCGA-CM-5861-01 8 121309764 121309764 G A COL14A1 Missense_Mutation p.M1417I 0.21 tolerated(0.13) probably_damaging(0.935) TCGA-CM-5861-01 8 124384054 124384054 C T ATAD2 Missense_Mutation p.R131Q 0.13 tolerated_low_confidence(0.1) benign(0.003) TCGA-CM-5861-01 8 125499628 125499628 G A RNF139 Missense_Mutation p.D580N 0.09 deleterious(0) possibly_damaging(0.803) TCGA-CM-5861-01 8 12883967 12883967 G - KIAA1456 3'UTR 0.45 TCGA-CM-5861-01 8 130861516 130861516 T C FAM49B Silent p.G271G 0.16 TCGA-CM-5861-01 8 131140327 131140327 T C ASAP1 Silent p.S409S 0.18 TCGA-CM-5861-01 8 132051877 132051877 C T ADCY8 Missense_Mutation p.D235N 0.28 tolerated(0.25) benign(0.355) TCGA-CM-5861-01 8 132052542 132052542 T C ADCY8 Missense_Mutation p.E13G 0.21 deleterious_low_confidence(0.02) benign(0.143) TCGA-CM-5861-01 8 133900678 133900678 C A TG Missense_Mutation p.L876I 0.09 deleterious(0.03) probably_damaging(0.958) TCGA-CM-5861-01 8 134052300 134052300 G A SLA Missense_Mutation p.A227V 0.30 tolerated(0.3) benign(0.006) TCGA-CM-5861-01 8 134225305 134225305 G A WISP1 Missense_Mutation p.A90T 0.56 deleterious(0.01) probably_damaging(0.969) TCGA-CM-5861-01 8 13965740 13965740 A G SGCZ Silent p.T184T 0.23 TCGA-CM-5861-01 8 141900833 141900833 C T PTK2 Missense_Mutation p.A2T 0.28 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-CM-5861-01 8 142151514 142151514 G - DENND3 Intron 0.31 TCGA-CM-5861-01 8 142487996 142487996 G A MROH5 Intron 0.64 TCGA-CM-5861-01 8 143928051 143928051 T C GML Missense_Mutation p.V141A 0.25 tolerated(0.47) benign(0.002) TCGA-CM-5861-01 8 143957206 143957206 G A CYP11B1 Missense_Mutation p.A348V 0.32 deleterious(0.04) benign(0.315) TCGA-CM-5861-01 8 144671992 144671992 T - EEF1D Frame_Shift_Del p.K87Rfs*73 0.32 TCGA-CM-5861-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.32 TCGA-CM-5861-01 8 145004702 145004702 G A PLEC Silent p.D906D 0.21 TCGA-CM-5861-01 8 145006402 145006402 C T PLEC Missense_Mutation p.A797T 0.24 unknown(0) TCGA-CM-5861-01 8 145009283 145009283 C T PLEC Missense_Mutation p.V378M 0.10 unknown(0) TCGA-CM-5861-01 8 145618550 145618550 C T CPSF1 Missense_Mutation p.V1439I 0.44 tolerated(0.35) benign(0.029) TCGA-CM-5861-01 8 146156529 146156529 A G ZNF16 Silent p.T548T 0.32 TCGA-CM-5861-01 8 146156735 146156735 G A ZNF16 Nonsense_Mutation p.Q480* 0.27 TCGA-CM-5861-01 8 15517020 15517020 A G TUSC3 Missense_Mutation p.N144S 0.24 deleterious(0.05) benign(0.101) TCGA-CM-5861-01 8 1616626 1616626 C T DLGAP2 Nonsense_Mutation p.Q568* 0.28 TCGA-CM-5861-01 8 16859491 16859491 C G FGF20 Missense_Mutation p.L17F 0.12 tolerated_low_confidence(0.39) possibly_damaging(0.86) TCGA-CM-5861-01 8 17885382 17885385 TTTC - PCM1 3'UTR 0.47 TCGA-CM-5861-01 8 1900927 1900927 G A ARHGEF10 Missense_Mutation p.G1152S 0.21 deleterious(0.01) probably_damaging(0.953) TCGA-CM-5861-01 8 20107567 20107567 C T LZTS1 Missense_Mutation p.R486H 0.33 tolerated(0.11) possibly_damaging(0.515) TCGA-CM-5861-01 8 21985320 21985320 C A HR Missense_Mutation p.S212I 0.24 deleterious(0) possibly_damaging(0.775) TCGA-CM-5861-01 8 22019334 22019334 G A SFTPC 5'UTR 0.29 TCGA-CM-5861-01 8 24771384 24771384 C T NEFM Silent p.R26R 0.21 TCGA-CM-5861-01 8 28210809 28210809 G - ZNF395 Frame_Shift_Del p.H234Tfs*43 0.36 TCGA-CM-5861-01 8 28573990 28573990 C T EXTL3 Silent p.T138T 0.10 TCGA-CM-5861-01 8 28595088 28595088 G A EXTL3 Missense_Mutation p.A777T 0.06 deleterious(0.03) possibly_damaging(0.59) TCGA-CM-5861-01 8 3087702 3087702 C T CSMD1 Missense_Mutation p.R1402H 0.56 probably_damaging(0.988) TCGA-CM-5861-01 8 3216805 3216805 C T CSMD1 Missense_Mutation p.G1058D 0.11 probably_damaging(1) TCGA-CM-5861-01 8 38677249 38677249 T C TACC1 Missense_Mutation p.S163P 0.13 tolerated(1) benign(0.001) TCGA-CM-5861-01 8 38854631 38854631 T C ADAM9 Silent p.L17L 0.21 TCGA-CM-5861-01 8 39613336 39613336 G A ADAM2 Missense_Mutation p.H570Y 0.09 tolerated(0.17) benign(0.209) TCGA-CM-5861-01 8 39785490 39785490 A G IDO1 Missense_Mutation p.D333G 0.16 deleterious(0) possibly_damaging(0.903) TCGA-CM-5861-01 8 42033515 42033515 G T PLAT Missense_Mutation p.P562Q 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-5861-01 8 48650559 48650559 G A CEBPD Silent p.L42L 0.40 TCGA-CM-5861-01 8 56015058 56015058 A G XKR4 Missense_Mutation p.K4E 0.48 deleterious_low_confidence(0) benign(0.292) TCGA-CM-5861-01 8 61735158 61735158 T - CHD7 Frame_Shift_Del p.L1020* 0.09 TCGA-CM-5861-01 8 623865 623865 T - ERICH1 Frame_Shift_Del p.R163Gfs*3 0.18 TCGA-CM-5861-01 8 62475349 62475349 T C ASPH Missense_Mutation p.Y464C 0.28 deleterious(0) probably_damaging(0.984) TCGA-CM-5861-01 8 62475367 62475367 T - ASPH Frame_Shift_Del p.N458Mfs*9 0.10 TCGA-CM-5861-01 8 6614683 6614683 G T AGPAT5 Splice_Site p.X290_splice 0.24 TCGA-CM-5861-01 8 67547142 67547142 A G VCPIP1 Missense_Mutation p.V1088A 0.11 tolerated_low_confidence(0.09) benign(0.078) TCGA-CM-5861-01 8 68956821 68956821 C T PREX2 Silent p.G313G 0.12 TCGA-CM-5861-01 8 72958792 72958792 T - TRPA1 Frame_Shift_Del p.T673Hfs*23 0.35 TCGA-CM-5861-01 8 73850222 73850222 A G KCNB2 Missense_Mutation p.S878G 0.53 tolerated_low_confidence(0.38) benign(0.001) TCGA-CM-5861-01 8 73850434 73850434 A - KCNB2 3'UTR 0.27 TCGA-CM-5861-01 8 77763422 77763422 G A ZFHX4 Missense_Mutation p.R1422Q 0.28 benign(0.417) TCGA-CM-5861-01 8 86351171 86351171 C T CA3 Silent p.N11N 0.18 TCGA-CM-5861-01 8 91657593 91657593 G A TMEM64 Missense_Mutation p.L181F 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-CM-5861-01 8 94745911 94745911 T C RBM12B Missense_Mutation p.R910G 0.29 tolerated(0.13) probably_damaging(0.916) TCGA-CM-5861-01 8 97251698 97251698 C T MTERFD1 3'UTR 0.22 TCGA-CM-5861-01 8 97506367 97506367 C A SDC2 5'UTR 0.30 TCGA-CM-5861-01 8 99442311 99442311 C A KCNS2 3'UTR 0.55 TCGA-CM-5861-01 8 9953475 9953475 A T MSRA Intron 0.25 TCGA-CM-5861-01 9 100125964 100125964 C T CCDC180 Intron 0.26 TCGA-CM-5861-01 9 100367792 100367792 C A TSTD2 Missense_Mutation p.E362D 0.40 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 9 101911650 101911650 A G TGFBR1 3'UTR 0.38 TCGA-CM-5861-01 9 103054983 103054983 G - INVS Frame_Shift_Del p.E817Rfs*19 0.30 TCGA-CM-5861-01 9 107602677 107602677 C T ABCA1 Missense_Mutation p.E313K 0.33 tolerated(0.08) benign(0.126) TCGA-CM-5861-01 9 115946625 115946625 A G FKBP15 Missense_Mutation p.S555P 0.33 deleterious(0.01) benign(0.049) TCGA-CM-5861-01 9 116958294 116958294 T C COL27A1 Splice_Site p.X708_splice 0.43 TCGA-CM-5861-01 9 117797539 117797539 G - TNC Frame_Shift_Del p.R1911Gfs*35 0.31 TCGA-CM-5861-01 9 120476505 120476505 T C TLR4 Missense_Mutation p.V700A 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-CM-5861-01 9 123220865 123220866 - T CDK5RAP2 Frame_Shift_Ins p.N746Kfs*10 0.23 TCGA-CM-5861-01 9 125143819 125143819 C A PTGS1 Silent p.A222A 0.33 TCGA-CM-5861-01 9 125148839 125148839 G A PTGS1 Missense_Mutation p.R375H 0.32 deleterious(0.02) possibly_damaging(0.702) TCGA-CM-5861-01 9 125390978 125390978 C A OR1B1 Silent p.V279V 0.14 TCGA-CM-5861-01 9 127557402 127557402 C T OLFML2A Silent p.L152L 0.13 TCGA-CM-5861-01 9 129870418 129870418 G A ANGPTL2 Missense_Mutation p.A198V 0.31 tolerated(0.1) benign(0.003) TCGA-CM-5861-01 9 130488592 130488592 A G TTC16 Missense_Mutation p.Y445C 0.14 tolerated(0.05) benign(0.014) TCGA-CM-5861-01 9 131345439 131345439 C A SPTAN1 Silent p.A630A 0.34 TCGA-CM-5861-01 9 131361423 131361423 T - SPTAN1 Intron 0.29 TCGA-CM-5861-01 9 131380387 131380387 G A SPTAN1 Missense_Mutation p.R1867Q 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-CM-5861-01 9 131482081 131482081 C T PKN3 Silent p.L748L 0.11 TCGA-CM-5861-01 9 131513049 131513049 T C ZER1 Missense_Mutation p.K402R 0.38 tolerated(0.29) benign(0.046) TCGA-CM-5861-01 9 131584849 131584849 G T ENDOG Missense_Mutation p.R285L 0.40 deleterious(0.01) probably_damaging(0.96) TCGA-CM-5861-01 9 135374806 135374806 G A C9orf171 Missense_Mutation p.E151K 0.54 tolerated(0.57) benign(0.029) TCGA-CM-5861-01 9 135940593 135940593 G A CEL Silent p.G172G 0.30 TCGA-CM-5861-01 9 135975677 135975677 C T RALGDS Silent p.L849L 0.21 TCGA-CM-5861-01 9 135977313 135977313 G A RALGDS Intron 0.34 TCGA-CM-5861-01 9 136268102 136268102 G A C9orf96 Missense_Mutation p.A479T 0.37 deleterious(0.04) benign(0.018) TCGA-CM-5861-01 9 136650980 136650980 G T VAV2 Missense_Mutation p.L484I 0.34 tolerated(0.29) probably_damaging(0.971) TCGA-CM-5861-01 9 138591341 138591341 G A SOHLH1 5'UTR 0.35 TCGA-CM-5861-01 9 139264326 139264326 C A CARD9 Missense_Mutation p.C318F 0.19 tolerated(0.14) benign(0.001) TCGA-CM-5861-01 9 139651566 139651566 T C LCN8 Missense_Mutation p.T27A 0.19 tolerated(0.13) benign(0.005) TCGA-CM-5861-01 9 139685824 139685824 T C TMEM141 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) possibly_damaging(0.52) TCGA-CM-5861-01 9 139733823 139733823 A C RABL6 Missense_Mutation p.E549A 0.35 tolerated_low_confidence(0.26) possibly_damaging(0.486) TCGA-CM-5861-01 9 139889987 139889987 C T CLIC3 Missense_Mutation p.G59D 0.15 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 9 140128604 140128604 G T SLC34A3 Silent p.V323V 0.39 TCGA-CM-5861-01 9 140146225 140146225 C T C9orf173 Missense_Mutation p.P49L 0.35 tolerated(0.53) probably_damaging(0.992) TCGA-CM-5861-01 9 140953024 140953024 G A CACNA1B Missense_Mutation p.A1438T 0.14 deleterious(0) possibly_damaging(0.841) TCGA-CM-5861-01 9 16727871 16727871 G A BNC2 Missense_Mutation p.T85M 0.06 tolerated_low_confidence(0.07) benign(0.143) TCGA-CM-5861-01 9 17298445 17298445 T C CNTLN Intron 0.17 TCGA-CM-5861-01 9 18504910 18504910 C T ADAMTSL1 Silent p.C49C 0.32 TCGA-CM-5861-01 9 18887837 18887837 A G ADAMTSL1 Missense_Mutation p.I1420V 0.14 tolerated(1) benign(0.002) TCGA-CM-5861-01 9 21440949 21440949 G A IFNA1 Missense_Mutation p.R148Q 0.24 tolerated(1) benign(0.004) TCGA-CM-5861-01 9 26913896 26913896 G A PLAA Silent p.A512A 0.24 TCGA-CM-5861-01 9 32466426 32466426 T C DDX58 Silent p.A733A 0.35 TCGA-CM-5861-01 9 35061100 35061100 C T VCP Missense_Mutation p.R424H 0.41 deleterious(0) probably_damaging(0.989) TCGA-CM-5861-01 9 35375139 35375139 C T UNC13B Missense_Mutation p.R437W 0.35 deleterious(0) probably_damaging(0.995) TCGA-CM-5861-01 9 36246204 36246204 C T GNE Missense_Mutation p.R178K 0.35 deleterious(0) probably_damaging(0.995) TCGA-CM-5861-01 9 37956046 37956046 A G SHB Missense_Mutation p.F354L 0.27 deleterious(0.03) probably_damaging(0.91) TCGA-CM-5861-01 9 40773050 40773050 T C ZNF658 Missense_Mutation p.Y742C 0.32 deleterious(0) probably_damaging(0.911) TCGA-CM-5861-01 9 43822776 43822776 G A CNTNAP3B Missense_Mutation p.A444T 0.22 tolerated(0.56) benign(0.05) TCGA-CM-5861-01 9 71827513 71827513 A - TJP2 Frame_Shift_Del p.K69Rfs*105 0.27 TCGA-CM-5861-01 9 71863314 71863314 A G TJP2 Intron 0.32 TCGA-CM-5861-01 9 72047481 72047481 C T APBA1 Missense_Mutation p.V805I 0.37 tolerated(0.18) probably_damaging(0.992) TCGA-CM-5861-01 9 72659128 72659128 C T MAMDC2 Silent p.G5G 0.22 TCGA-CM-5861-01 9 745183 745183 G T KANK1 Missense_Mutation p.R1336M 0.38 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 9 80038886 80038886 C T GNA14 3'UTR 0.33 TCGA-CM-5861-01 9 84225142 84225142 C T TLE1 Missense_Mutation p.G442R 0.33 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 9 86451743 86451743 C T KIF27 3'UTR 0.27 TCGA-CM-5861-01 9 88287537 88287537 C T AGTPBP1 Missense_Mutation p.V166I 0.29 tolerated(0.21) benign(0.045) TCGA-CM-5861-01 9 95152287 95152287 T A OGN Missense_Mutation p.D160V 0.35 deleterious(0.02) possibly_damaging(0.633) TCGA-CM-5861-01 9 95155481 95155481 T C OGN Missense_Mutation p.Y105C 0.15 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 9 95222849 95222849 C T ASPN Missense_Mutation p.G238D 0.36 tolerated(0.86) benign(0.001) TCGA-CM-5861-01 9 96019305 96019305 C - WNK2 Frame_Shift_Del p.H758Tfs*18 0.15 TCGA-CM-5861-01 9 98209617 98209617 G - PTCH1 Frame_Shift_Del p.R1308Efs*64 0.28 TCGA-CM-5861-01 9 99150491 99150491 T C ZNF367 3'UTR 0.43 TCGA-CM-5861-01 X 100871039 100871039 T C ARMCX6 Missense_Mutation p.Q191R 0.19 deleterious(0.02) benign(0.186) TCGA-CM-5861-01 X 10109615 10109615 G T WWC3 3'UTR 0.45 TCGA-CM-5861-01 X 101581194 101581194 A C NXF2 Missense_Mutation p.E598A 0.11 tolerated(0.2) benign(0.188) TCGA-CM-5861-01 X 10181922 10181922 G A CLCN4 Missense_Mutation p.R593H 0.38 deleterious(0.03) benign(0.172) TCGA-CM-5861-01 X 101970780 101970780 C G GPRASP2 Missense_Mutation p.S328C 0.40 deleterious(0) possibly_damaging(0.885) TCGA-CM-5861-01 X 102979867 102979867 C T GLRA4 Missense_Mutation p.R54Q 0.34 deleterious(0.01) benign(0.04) TCGA-CM-5861-01 X 107319387 107319387 G A VSIG1 Missense_Mutation p.A293T 0.33 tolerated(0.33) possibly_damaging(0.734) TCGA-CM-5861-01 X 107374574 107374574 G A ATG4A Missense_Mutation p.R93K 0.40 tolerated(0.23) benign(0.022) TCGA-CM-5861-01 X 107418441 107418441 G A COL4A6 Silent p.D946D 0.31 TCGA-CM-5861-01 X 109697358 109697358 T C RGAG1 Silent p.D1171D 0.38 TCGA-CM-5861-01 X 11197428 11197428 T C ARHGAP6 Missense_Mutation p.T492A 0.32 tolerated(0.12) possibly_damaging(0.522) TCGA-CM-5861-01 X 114424520 114424520 C T RBMXL3 Silent p.H172H 0.33 TCGA-CM-5861-01 X 118770987 118770987 T C SEPT6 Intron 0.17 TCGA-CM-5861-01 X 119660487 119660487 C T CUL4B 3'Flank 0.37 TCGA-CM-5861-01 X 122778720 122778720 A G THOC2 Missense_Mutation p.V490A 0.33 tolerated(0.27) benign(0.119) TCGA-CM-5861-01 X 123517769 123517769 C A TENM1 Missense_Mutation p.G2338C 0.13 deleterious(0) probably_damaging(0.999) TCGA-CM-5861-01 X 123654500 123654500 T C TENM1 Silent p.V1056V 0.33 TCGA-CM-5861-01 X 125685061 125685061 G A DCAF12L1 3'UTR 0.18 TCGA-CM-5861-01 X 12736268 12736268 A G FRMPD4 Missense_Mutation p.E1108G 0.21 tolerated_low_confidence(0.18) possibly_damaging(0.493) TCGA-CM-5861-01 X 12817490 12817490 G A PRPS2 Missense_Mutation p.R96Q 0.31 deleterious(0.02) benign(0.067) TCGA-CM-5861-01 X 128926360 128926361 - C SASH3 Frame_Shift_Ins p.Q169Pfs*22 0.31 TCGA-CM-5861-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.47 TCGA-CM-5861-01 X 130218355 130218355 C G ARHGAP36 Missense_Mutation p.A241G 0.30 tolerated(0.35) benign(0.201) TCGA-CM-5861-01 X 131525082 131525082 A G MBNL3 Silent p.C188C 0.38 TCGA-CM-5861-01 X 13337468 13337468 A T ATXN3L Missense_Mutation p.L196I 0.35 tolerated(0.2) benign(0.23) TCGA-CM-5861-01 X 134156028 134156028 G A FAM127C 3'UTR 0.29 TCGA-CM-5861-01 X 134166355 134166355 T C FAM127A 5'UTR 0.52 TCGA-CM-5861-01 X 134166742 134166742 A G FAM127A Missense_Mutation p.D110G 0.30 tolerated_low_confidence(0.05) benign(0.318) TCGA-CM-5861-01 X 134992676 134992676 C T SAGE1 Missense_Mutation p.A656V 0.14 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 X 135302953 135302953 T - MAP7D3 Frame_Shift_Del p.D820Tfs*7 0.11 TCGA-CM-5861-01 X 135956190 135956190 A - RBMX 3'UTR 0.12 TCGA-CM-5861-01 X 136649490 136649490 G A ZIC3 Missense_Mutation p.A214T 0.42 tolerated(0.68) benign(0.005) TCGA-CM-5861-01 X 136649847 136649847 C A ZIC3 Missense_Mutation p.P333T 0.35 deleterious(0.01) benign(0.163) TCGA-CM-5861-01 X 13727256 13727256 C T RAB9A Missense_Mutation p.R131W 0.22 deleterious(0.01) benign(0.054) TCGA-CM-5861-01 X 140967199 140967199 G - MAGEC3 Frame_Shift_Del p.E168Rfs*45 0.34 TCGA-CM-5861-01 X 144906703 144906710 TTTTTTTC - SLITRK2 3'UTR 0.12 TCGA-CM-5861-01 X 147063001 147063001 G A FMR1NB Missense_Mutation p.A27T 0.39 tolerated(0.1) possibly_damaging(0.682) TCGA-CM-5861-01 X 14748563 14748563 A T GLRA2 Missense_Mutation p.I439F 0.25 tolerated(0.18) possibly_damaging(0.623) TCGA-CM-5861-01 X 151908809 151908809 A G CSAG1 Silent p.E16E 0.17 TCGA-CM-5861-01 X 151908813 151908813 C T CSAG1 Missense_Mutation p.R18W 0.17 tolerated_low_confidence(0.36) benign(0) TCGA-CM-5861-01 X 151908816 151908816 G A CSAG1 Missense_Mutation p.G19R 0.15 tolerated_low_confidence(0.84) benign(0.002) TCGA-CM-5861-01 X 151908915 151908915 T C CSAG1 Missense_Mutation p.S52P 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-CM-5861-01 X 152935985 152935985 T A PNCK Missense_Mutation p.E403V 0.15 deleterious(0.01) possibly_damaging(0.731) TCGA-CM-5861-01 X 153040483 153040483 C T PLXNB3 Silent p.D1383D 0.32 TCGA-CM-5861-01 X 153070087 153070087 C - PDZD4 Frame_Shift_Del p.G344Afs*63 0.29 TCGA-CM-5861-01 X 153171550 153171550 C T AVPR2 Missense_Mutation p.A197V 0.33 tolerated(1) benign(0.021) TCGA-CM-5861-01 X 153215723 153215723 C T HCFC1 Missense_Mutation p.G1992D 0.17 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 X 153626737 153626737 T C RPL10 Splice_Site 0.33 TCGA-CM-5861-01 X 153694063 153694063 G A PLXNA3 Missense_Mutation p.R802H 0.30 tolerated(0.16) benign(0.018) TCGA-CM-5861-01 X 153716439 153716439 C T SLC10A3 Missense_Mutation p.V281I 0.37 tolerated(0.24) benign(0.06) TCGA-CM-5861-01 X 154003544 154003544 C T DKC1 Missense_Mutation p.A445V 0.42 tolerated(0.46) benign(0) TCGA-CM-5861-01 X 155008937 155008937 A T SPRY3 3'UTR 0.31 TCGA-CM-5861-01 X 16864001 16864001 A - RBBP7 Frame_Shift_Del p.W431Gfs*82 0.27 TCGA-CM-5861-01 X 18606221 18606221 G T CDKL5 Missense_Mutation p.Q234H 0.40 tolerated_low_confidence(0.25) probably_damaging(0.934) TCGA-CM-5861-01 X 20159925 20159925 G A EIF1AX 5'UTR 0.38 TCGA-CM-5861-01 X 21874804 21874804 A G YY2 Missense_Mutation p.N68D 0.25 tolerated(1) benign(0.002) TCGA-CM-5861-01 X 24732689 24732689 G A POLA1 Missense_Mutation p.R116H 0.34 tolerated(0.29) benign(0.001) TCGA-CM-5861-01 X 27766587 27766587 A C DCAF8L2 Silent p.L525L 0.31 TCGA-CM-5861-01 X 2778088 2778088 C T GYG2 Silent p.R304R 0.41 TCGA-CM-5861-01 X 27998681 27998681 G - DCAF8L1 Frame_Shift_Del p.M258Cfs*10 0.29 TCGA-CM-5861-01 X 30849364 30849364 A - TAB3 3'UTR 0.31 TCGA-CM-5861-01 X 3229633 3229633 C A MXRA5 Missense_Mutation p.G2204V 0.41 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 X 32834722 32834722 C A DMD Missense_Mutation p.L131F 0.31 possibly_damaging(0.896) TCGA-CM-5861-01 X 34148765 34148765 C T FAM47A Missense_Mutation p.R544H 0.42 tolerated(0.44) possibly_damaging(0.715) TCGA-CM-5861-01 X 34149947 34149947 A C FAM47A Missense_Mutation p.L150R 0.20 deleterious(0) probably_damaging(0.986) TCGA-CM-5861-01 X 37027956 37027956 C T FAM47C Silent p.P491P 0.41 TCGA-CM-5861-01 X 47065252 47065253 - A UBA1 Intron 0.40 TCGA-CM-5861-01 X 47432355 47432355 C T SYN1 Missense_Mutation p.A676T 0.30 tolerated(0.07) benign(0.066) TCGA-CM-5861-01 X 48318147 48318147 G T SLC38A5 Missense_Mutation p.P395Q 0.39 deleterious(0.01) benign(0.443) TCGA-CM-5861-01 X 48458724 48458724 G A WDR13 Missense_Mutation p.A181T 0.33 deleterious(0) probably_damaging(0.997) TCGA-CM-5861-01 X 49020295 49020295 G - MAGIX Intron 0.42 TCGA-CM-5861-01 X 49110402 49110402 T C FOXP3 Missense_Mutation p.S315G 0.25 tolerated(0.24) possibly_damaging(0.531) TCGA-CM-5861-01 X 50129560 50129560 T C DGKK RNA 0.33 TCGA-CM-5861-01 X 50131532 50131532 C T DGKK RNA 0.34 TCGA-CM-5861-01 X 50658841 50658841 G A BMP15 Missense_Mutation p.R138H 0.38 tolerated(0.56) benign(0.015) TCGA-CM-5861-01 X 52681321 52681321 G A SSX7 Silent p.D87D 0.36 TCGA-CM-5861-01 X 53222676 53222676 C T KDM5C Nonsense_Mutation p.W1420* 0.38 TCGA-CM-5861-01 X 53616627 53616627 G A HUWE1 Silent p.C1447C 0.06 TCGA-CM-5861-01 X 54275714 54275714 C T WNK3 Missense_Mutation p.E1023K 0.41 tolerated_low_confidence(0.1) benign(0.009) TCGA-CM-5861-01 X 55028048 55028048 G A APEX2 Missense_Mutation p.R76H 0.38 deleterious(0) probably_damaging(0.973) TCGA-CM-5861-01 X 55650221 55650221 T C FOXR2 Missense_Mutation p.M26T 0.33 deleterious(0) probably_damaging(0.961) TCGA-CM-5861-01 X 56310797 56310797 G A KLF8 Missense_Mutation p.R317H 0.40 deleterious(0.03) benign(0.018) TCGA-CM-5861-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.26 TCGA-CM-5861-01 X 57623315 57623315 C T ZXDB 3'UTR 0.37 TCGA-CM-5861-01 X 5821238 5821238 G T NLGN4X Missense_Mutation p.P494H 0.36 deleterious(0) probably_damaging(1) TCGA-CM-5861-01 X 62570789 62570789 T A SPIN4 5'UTR 0.37 TCGA-CM-5861-01 X 65478742 65478742 T C HEPH Missense_Mutation p.V1040A 0.35 deleterious(0.03) possibly_damaging(0.824) TCGA-CM-5861-01 X 65824976 65824976 A C EDA2R Missense_Mutation p.S60R 0.23 tolerated(0.17) benign(0.06) TCGA-CM-5861-01 X 66764880 66764880 C T AR 5'UTR 0.36 TCGA-CM-5861-01 X 69640135 69640135 A G KIF4A 3'UTR 0.36 TCGA-CM-5861-01 X 70367720 70367720 G A NLGN3 Missense_Mutation p.A41T 0.30 tolerated(0.4) benign(0.065) TCGA-CM-5861-01 X 70387084 70387084 T C NLGN3 Silent p.D379D 0.35 TCGA-CM-5861-01 X 71359489 71359489 G T NHSL2 Missense_Mutation p.R697S 0.29 deleterious(0) possibly_damaging(0.712) TCGA-CM-5861-01 X 71549540 71549540 T C HDAC8 3'UTR 0.36 TCGA-CM-5861-01 X 72783047 72783047 C - CHIC1 5'UTR 0.43 TCGA-CM-5861-01 X 73641237 73641238 GA - SLC16A2 5'Flank 0.39 TCGA-CM-5861-01 X 73814190 73814190 T C RLIM Silent p.L68L 0.33 TCGA-CM-5861-01 X 74742881 74742881 A C ZDHHC15 5'UTR 0.19 TCGA-CM-5861-01 X 75651696 75651696 T C MAGEE1 3'UTR 0.31 TCGA-CM-5861-01 X 76711944 76711945 - T FGF16 Frame_Shift_Ins p.L96Ffs*9 0.20 TCGA-CM-5861-01 X 76776285 76776285 A G ATRX Missense_Mutation p.V2394A 0.35 probably_damaging(0.993) TCGA-CM-5861-01 X 76938229 76938230 - T ATRX Frame_Shift_Ins p.R840Kfs*9 0.34 TCGA-CM-5861-01 X 76939245 76939245 T C ATRX Silent p.E501E 0.13 TCGA-CM-5861-01 X 77275833 77275833 G A ATP7A Missense_Mutation p.V907I 0.34 deleterious(0.04) benign(0.064) TCGA-CM-5861-01 X 78011621 78011621 T C LPAR4 3'UTR 0.24 TCGA-CM-5861-01 X 79699577 79699577 G C FAM46D 3'UTR 0.25 TCGA-CM-5861-01 X 83357100 83357100 C A RPS6KA6 Missense_Mutation p.G574V 0.25 deleterious(0.02) benign(0.102) TCGA-CM-5861-01 X 83730288 83730288 C T HDX Missense_Mutation p.E40K 0.37 deleterious(0) probably_damaging(0.994) TCGA-CM-5861-01 X 92967084 92967084 T C FAM133A 3'UTR 0.37 TCGA-CM-5861-01 X 96140226 96140226 T - RPA4 3'UTR 0.17 TCGA-CM-5861-01 X 99888992 99888992 G T TSPAN6 Missense_Mutation p.A129D 0.30 deleterious(0.03) benign(0.147) TCGA-CM-5862-01 10 100022766 100022766 G A LOXL4 Missense_Mutation p.S4F 0.46 tolerated_low_confidence(0.32) benign(0.001) TCGA-CM-5862-01 10 106865180 106865180 C T SORCS3 Silent p.I373I 0.40 TCGA-CM-5862-01 10 129906942 129906942 C T MKI67 Silent p.T1054T 0.46 TCGA-CM-5862-01 10 131757263 131757263 G T EBF3 Silent p.V140V 0.37 TCGA-CM-5862-01 11 11362396 11362396 G A GALNT18 Silent p.H416H 0.31 TCGA-CM-5862-01 11 133802070 133802070 C T IGSF9B Missense_Mutation p.V336M 0.40 tolerated(0.05) possibly_damaging(0.822) TCGA-CM-5862-01 11 2428999 2428999 C T TRPM5 Missense_Mutation p.A976T 0.44 deleterious(0) probably_damaging(0.956) TCGA-CM-5862-01 11 57958788 57958788 G T OR9Q2 Missense_Mutation p.V276L 0.40 deleterious(0.04) benign(0.075) TCGA-CM-5862-01 11 76372419 76372419 G A LRRC32 Missense_Mutation p.T73I 0.35 tolerated(0.15) benign(0.03) TCGA-CM-5862-01 12 113873170 113873170 A C SDSL Silent p.A160A 0.40 TCGA-CM-5862-01 12 120189919 120189919 C T CIT Missense_Mutation p.R947H 0.50 tolerated(0.08) benign(0.002) TCGA-CM-5862-01 12 130919310 130919310 T C RIMBP2 Missense_Mutation p.D724G 0.08 deleterious(0.01) possibly_damaging(0.69) TCGA-CM-5862-01 12 48722996 48722996 A C H1FNT 5'UTR 0.92 TCGA-CM-5862-01 12 55615046 55615046 A C OR10A7 Missense_Mutation p.K80Q 0.41 tolerated(0.13) possibly_damaging(0.458) TCGA-CM-5862-01 12 7526110 7526110 A C CD163L1 Missense_Mutation p.I1179S 0.14 deleterious(0) possibly_damaging(0.906) TCGA-CM-5862-01 13 19751632 19751632 T G TUBA3C Missense_Mutation p.K164T 0.16 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CM-5862-01 13 23929758 23929758 A G SACS Silent p.F331F 0.14 TCGA-CM-5862-01 13 28877423 28877423 C T FLT1 Missense_Mutation p.V1300I 0.13 tolerated(0.93) benign(0) TCGA-CM-5862-01 13 50204836 50204836 G A ARL11 Missense_Mutation p.V85M 0.11 deleterious(0.02) probably_damaging(0.956) TCGA-CM-5862-01 13 51826293 51826293 C T FAM124A Missense_Mutation p.R300C 0.16 deleterious(0) probably_damaging(1) TCGA-CM-5862-01 13 95271765 95271765 G T GPR180 Missense_Mutation p.A244S 0.37 tolerated(0.36) benign(0.136) TCGA-CM-5862-01 14 106692135 106692135 C T IGHV3-21 5'UTR 0.39 TCGA-CM-5862-01 14 51382147 51382147 C T PYGL Missense_Mutation p.S437N 0.23 tolerated(0.28) benign(0.003) TCGA-CM-5862-01 14 69703251 69703251 C T EXD2 Silent p.S428S 0.73 TCGA-CM-5862-01 14 96916199 96916199 C A AK7 Missense_Mutation p.L311I 0.19 deleterious(0.03) probably_damaging(0.979) TCGA-CM-5862-01 15 22473335 22473335 A G IGHV4OR15-8 Missense_Mutation p.F7L 0.16 tolerated_low_confidence(0.37) benign(0.002) TCGA-CM-5862-01 15 26825464 26825464 A C GABRB3 Splice_Site p.X228_splice 0.37 TCGA-CM-5862-01 15 33952468 33952468 G A RYR3 Missense_Mutation p.R1489Q 0.58 probably_damaging(0.988) TCGA-CM-5862-01 15 52620099 52620099 C G MYO5A Missense_Mutation p.V1529L 0.43 tolerated(0.29) benign(0.079) TCGA-CM-5862-01 15 64332407 64332407 C G DAPK2 Missense_Mutation p.K18N 0.40 tolerated(0.89) benign(0.001) TCGA-CM-5862-01 16 30671652 30671652 G C FBRS Missense_Mutation p.R176S 0.41 benign(0.412) TCGA-CM-5862-01 16 56548558 56548558 T C BBS2 Missense_Mutation p.H51R 0.37 tolerated(0.71) benign(0.001) TCGA-CM-5862-01 16 65006929 65006929 C T CDH11 Missense_Mutation p.R423H 0.42 tolerated(0.17) benign(0.012) TCGA-CM-5862-01 16 72130082 72130082 C T DHX38 Missense_Mutation p.S9L 0.47 deleterious_low_confidence(0) benign(0) TCGA-CM-5862-01 17 73208120 73208120 C T NUP85 Silent p.V108V 0.21 TCGA-CM-5862-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.85 deleterious(0) probably_damaging(0.997) TCGA-CM-5862-01 17 78023885 78023885 G A CCDC40 Missense_Mutation p.R321Q 0.96 tolerated(0.16) benign(0.004) TCGA-CM-5862-01 19 10132415 10132415 G A RDH8 Missense_Mutation p.R329Q 0.30 tolerated_low_confidence(0.66) benign(0.002) TCGA-CM-5862-01 19 1986928 1986928 G T BTBD2 Silent p.G439G 0.64 TCGA-CM-5862-01 19 2210823 2210823 C T DOT1L Silent p.T440T 0.17 TCGA-CM-5862-01 19 23329575 23329575 C G ZNF730 3'UTR 0.30 TCGA-CM-5862-01 19 31025761 31025761 C T ZNF536 Silent p.G726G 0.29 TCGA-CM-5862-01 19 3180212 3180212 C G S1PR4 3'UTR 0.25 TCGA-CM-5862-01 19 32844712 32844712 A G ZNF507 Missense_Mutation p.I326V 0.48 deleterious(0.03) possibly_damaging(0.456) TCGA-CM-5862-01 19 35843074 35843074 G A FFAR1 Missense_Mutation p.R207Q 0.55 tolerated(0.12) probably_damaging(0.974) TCGA-CM-5862-01 19 51645713 51645713 G A SIGLEC7 Silent p.T29T 0.44 TCGA-CM-5862-01 19 54496359 54496359 C T CACNG6 Silent p.C76C 0.75 TCGA-CM-5862-01 19 54849484 54849484 G A LILRA4 Silent p.S126S 0.35 TCGA-CM-5862-01 19 6306772 6306772 C T ACER1 Missense_Mutation p.V250M 0.28 tolerated(0.12) benign(0.365) TCGA-CM-5862-01 1 110146075 110146075 G A GNAT2 Silent p.H322H 0.10 TCGA-CM-5862-01 1 146634107 146634107 G A PRKAB2 Missense_Mutation p.A195V 0.25 tolerated(0.5) benign(0.001) TCGA-CM-5862-01 1 152283052 152283052 C T FLG Missense_Mutation p.R1437H 0.35 possibly_damaging(0.522) TCGA-CM-5862-01 1 156640300 156640300 G A NES Missense_Mutation p.P1227L 0.58 deleterious(0.02) benign(0.039) TCGA-CM-5862-01 1 156834552 156834552 C T NTRK1 Missense_Mutation p.A107V 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-CM-5862-01 1 156915947 156915947 T C ARHGEF11 Missense_Mutation p.E901G 0.40 deleterious(0) probably_damaging(0.999) TCGA-CM-5862-01 1 158651439 158651439 G A SPTA1 Missense_Mutation p.R137C 0.64 deleterious(0.04) benign(0.025) TCGA-CM-5862-01 1 176927551 176927551 C T ASTN1 Missense_Mutation p.E556K 0.30 deleterious(0) benign(0.131) TCGA-CM-5862-01 1 198675885 198675885 T C PTPRC Silent p.T236T 0.28 TCGA-CM-5862-01 1 241959601 241959601 G A WDR64 Missense_Mutation p.V1031I 0.61 tolerated(0.63) benign(0.001) TCGA-CM-5862-01 1 248802485 248802485 G A OR2T35 Silent p.P25P 0.34 TCGA-CM-5862-01 1 3624203 3624203 G A TP73 Missense_Mutation p.V93M 0.53 deleterious(0.01) possibly_damaging(0.901) TCGA-CM-5862-01 20 44685863 44685863 C T SLC12A5 Silent p.I1083I 0.46 TCGA-CM-5862-01 20 4681947 4681947 G C PRNP 3'UTR 0.22 TCGA-CM-5862-01 20 55213110 55213110 G C TFAP2C 3'UTR 0.27 TCGA-CM-5862-01 20 5903253 5903253 C T CHGB Missense_Mutation p.R155C 0.49 tolerated(0.11) possibly_damaging(0.627) TCGA-CM-5862-01 20 61288456 61288456 C T SLCO4A1 Missense_Mutation p.A217V 0.61 tolerated(0.27) benign(0.005) TCGA-CM-5862-01 21 35288037 35288037 G A ATP5O Missense_Mutation p.R11W 0.92 tolerated(0.19) benign(0.001) TCGA-CM-5862-01 22 17083087 17083087 T C TPTEP1 RNA 0.10 TCGA-CM-5862-01 22 29191246 29191246 C G XBP1 3'UTR 0.43 TCGA-CM-5862-01 22 37319408 37319408 G C CSF2RB Missense_Mutation p.E67Q 0.37 tolerated(0.43) benign(0.002) TCGA-CM-5862-01 22 50944506 50944506 G A LMF2 Silent p.F244F 0.45 TCGA-CM-5862-01 2 132905556 132905556 A G ANKRD30BL 3'UTR 0.07 TCGA-CM-5862-01 2 1653390 1653390 G A PXDN Missense_Mutation p.S721L 0.19 deleterious(0) possibly_damaging(0.735) TCGA-CM-5862-01 2 179578777 179578777 G T TTN Missense_Mutation p.L8870I 0.27 TCGA-CM-5862-01 2 202254161 202254161 G A TRAK2 Missense_Mutation p.S420L 0.65 tolerated(0.52) benign(0.007) TCGA-CM-5862-01 2 241991206 241991206 C T SNED1 Missense_Mutation p.T594M 0.32 deleterious(0) probably_damaging(0.999) TCGA-CM-5862-01 2 90108820 90108820 G T IGKV6D-41 Missense_Mutation p.A29S 0.61 tolerated(0.92) benign(0.014) TCGA-CM-5862-01 2 90121919 90121919 G A IGKV1D-17 Missense_Mutation p.R46Q 0.63 tolerated(0.46) benign(0.02) TCGA-CM-5862-01 2 96953199 96953199 G A SNRNP200 Silent p.Y1154Y 0.05 TCGA-CM-5862-01 2 98340579 98340579 C T ZAP70 Missense_Mutation p.A27V 0.28 tolerated(0.05) benign(0.424) TCGA-CM-5862-01 3 122420030 122420030 G A PARP14 Missense_Mutation p.V877M 0.41 deleterious(0) probably_damaging(0.996) TCGA-CM-5862-01 3 134851557 134851557 C T EPHB1 Silent p.S321S 0.44 TCGA-CM-5862-01 3 138186989 138186989 C T ESYT3 Missense_Mutation p.R421W 0.48 deleterious(0) possibly_damaging(0.847) TCGA-CM-5862-01 3 153839764 153839764 T C ARHGEF26 5'UTR 0.56 TCGA-CM-5862-01 3 157155357 157155357 G A PTX3 Missense_Mutation p.M62I 0.10 deleterious(0) probably_damaging(0.998) TCGA-CM-5862-01 3 197880152 197880152 G A FAM157A RNA 0.65 TCGA-CM-5862-01 3 49062095 49062095 A G IMPDH2 Missense_Mutation p.V479A 0.08 tolerated(0.16) benign(0.003) TCGA-CM-5862-01 3 53321640 53321640 G A DCP1A Silent p.Y571Y 0.78 TCGA-CM-5862-01 3 8775530 8775530 G A CAV3 5'UTR 0.87 TCGA-CM-5862-01 4 117220909 117220909 G A MTRNR2L13 5'UTR 0.43 TCGA-CM-5862-01 4 170038755 170038755 G T SH3RF1 Missense_Mutation p.Q566K 0.05 tolerated(0.41) benign(0.066) TCGA-CM-5862-01 4 184931053 184931053 C T STOX2 Silent p.S354S 0.52 TCGA-CM-5862-01 4 30724149 30724149 G A PCDH7 Missense_Mutation p.V369I 0.27 tolerated(0.24) benign(0.27) TCGA-CM-5862-01 4 38937389 38937389 C T FAM114A1 Missense_Mutation p.T505M 0.21 tolerated(0.05) benign(0.043) TCGA-CM-5862-01 4 438147 438147 T A ZNF721 Nonsense_Mutation p.R37* 0.25 TCGA-CM-5862-01 4 54362383 54362383 T G LNX1 Missense_Mutation p.K386T 0.28 deleterious(0) probably_damaging(0.99) TCGA-CM-5862-01 4 55602953 55602953 G A KIT Missense_Mutation p.R888Q 0.31 tolerated(0.11) probably_damaging(1) TCGA-CM-5862-01 4 62778477 62778477 T C LPHN3 Splice_Site p.X636_splice 0.42 TCGA-CM-5862-01 4 74270040 74270040 G A ALB 5'UTR 0.43 TCGA-CM-5862-01 5 140188281 140188281 G A PCDHA4 Silent p.A503A 0.54 TCGA-CM-5862-01 5 140250670 140250670 C T PCDHA11 Missense_Mutation p.T661M 0.11 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-CM-5862-01 5 26890584 26890584 C T CDH9 Missense_Mutation p.R448Q 0.88 deleterious(0) probably_damaging(0.994) TCGA-CM-5862-01 6 151672777 151672777 C A AKAP12 Nonsense_Mutation p.S1084* 0.32 TCGA-CM-5862-01 6 32010295 32010295 G A TNXB Silent p.N478N 0.38 TCGA-CM-5862-01 6 34835390 34835390 C G UHRF1BP1 Missense_Mutation p.P1239A 0.33 tolerated(0.45) benign(0.101) TCGA-CM-5862-01 6 41766553 41766553 G A USP49 Silent p.T595T 0.28 TCGA-CM-5862-01 6 76751698 76751698 G A IMPG1 Silent p.S71S 0.32 TCGA-CM-5862-01 6 84799238 84799238 A C MRAP2 3'UTR 0.29 TCGA-CM-5862-01 7 100246374 100246374 A G ACTL6B Silent p.H180H 0.29 TCGA-CM-5862-01 7 122341983 122341983 T C RNF148 Silent p.L274L 0.30 TCGA-CM-5862-01 7 123508956 123508956 G A HYAL4 Missense_Mutation p.R210Q 0.29 deleterious(0) probably_damaging(0.98) TCGA-CM-5862-01 7 137092657 137092657 C T DGKI Missense_Mutation p.G970S 0.24 deleterious(0.03) probably_damaging(1) TCGA-CM-5862-01 7 151478391 151478391 C T PRKAG2 Missense_Mutation p.V105M 0.28 deleterious_low_confidence(0.04) benign(0.066) TCGA-CM-5862-01 7 38515011 38515011 T G AMPH Missense_Mutation p.E170D 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5862-01 7 44178501 44178501 G A MYL7 3'UTR 0.40 TCGA-CM-5862-01 7 5879687 5879687 C - ZNF815P RNA 0.08 TCGA-CM-5862-01 7 94294570 94294570 A G PEG10 3'UTR 0.18 TCGA-CM-5862-01 8 145559765 145559765 C T SCRT1 Missense_Mutation p.A23T 0.07 tolerated(0.28) benign(0.026) TCGA-CM-5862-01 8 146066971 146066971 C T ZNF7 Missense_Mutation p.P160L 0.69 tolerated(0.32) benign(0.001) TCGA-CM-5862-01 8 25276951 25276951 C T GNRH1 Missense_Mutation p.G88E 0.75 deleterious(0.03) possibly_damaging(0.868) TCGA-CM-5862-01 8 36767023 36767023 C A KCNU1 Silent p.L767L 0.08 TCGA-CM-5862-01 8 39873057 39873057 T G IDO2 Missense_Mutation p.V400G 0.56 deleterious(0) benign(0.415) TCGA-CM-5862-01 8 61754292 61754292 T C CHD7 Silent p.D1541D 0.61 TCGA-CM-5862-01 8 71574017 71574017 G C LACTB2 Missense_Mutation p.R80G 0.48 tolerated(0.19) benign(0.004) TCGA-CM-5862-01 9 101911723 101911723 A G TGFBR1 3'UTR 0.38 TCGA-CM-5862-01 9 12695694 12695694 G T TYRP1 Missense_Mutation p.V189F 0.26 deleterious(0) probably_damaging(1) TCGA-CM-5862-01 9 131454239 131454239 C - SET Frame_Shift_Del p.P92Qfs*5 0.30 TCGA-CM-5862-01 9 139235571 139235571 C T GPSM1 Intron 0.77 TCGA-CM-5862-01 9 140772545 140772545 C T CACNA1B Missense_Mutation p.R54W 0.18 deleterious(0) benign(0.428) TCGA-CM-5862-01 9 84609875 84609875 G C SPATA31D1 Missense_Mutation p.R1497T 0.31 tolerated(0.17) probably_damaging(0.943) TCGA-CM-5862-01 9 91609311 91609311 G A C9orf47 3'UTR 0.21 TCGA-CM-5862-01 X 102334800 102334800 T G NXF3 Splice_Site p.X351_splice 0.94 TCGA-CM-5862-01 X 107414657 107414657 G A COL4A6 Silent p.S1080S 0.87 TCGA-CM-5862-01 X 41088663 41088663 G A USP9X Splice_Site p.X2406_splice 0.88 TCGA-CM-5862-01 X 66765079 66765079 C T AR Missense_Mutation p.R31C 0.63 tolerated_low_confidence(0.11) benign(0.02) TCGA-CM-5862-01 X 82763711 82763711 A G POU3F4 Missense_Mutation p.S127G 0.56 tolerated(1) benign(0.001) TCGA-CM-5862-01 X 90691136 90691136 C A PABPC5 Missense_Mutation p.A187E 0.24 tolerated(1) benign(0.005) TCGA-CM-5863-01 10 104233580 104233580 C T TMEM180 Missense_Mutation p.R368C 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-5863-01 10 19780470 19780470 C T MALRD1 Missense_Mutation p.P1064L 0.42 tolerated(0.05) benign(0.094) TCGA-CM-5863-01 10 75238352 75238352 C A PPP3CB Missense_Mutation p.D106Y 0.09 deleterious(0) probably_damaging(1) TCGA-CM-5863-01 11 27680976 27680976 A G BDNF Intron 0.07 TCGA-CM-5863-01 12 111296473 111296473 G A CCDC63 Missense_Mutation p.R88Q 0.09 tolerated(0.07) benign(0.002) TCGA-CM-5863-01 12 122862274 122862274 G T CLIP1 Silent p.R107R 0.17 TCGA-CM-5863-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.30 deleterious(0) benign(0.361) TCGA-CM-5863-01 12 54757371 54757371 C T GPR84 Missense_Mutation p.G89S 0.23 tolerated(0.1) probably_damaging(0.987) TCGA-CM-5863-01 12 54792482 54792482 G A ITGA5 Missense_Mutation p.R948W 0.25 deleterious(0) benign(0.001) TCGA-CM-5863-01 12 56822338 56822338 A G TIMELESS Missense_Mutation p.I468T 0.17 deleterious(0) possibly_damaging(0.821) TCGA-CM-5863-01 13 41486677 41486677 T C SUGT1P3 RNA 0.26 TCGA-CM-5863-01 13 51826046 51826046 C T FAM124A Silent p.D217D 0.47 TCGA-CM-5863-01 13 52742157 52742157 C T MRPS31P5 RNA 0.10 TCGA-CM-5863-01 14 105179606 105179606 G A INF2 Silent p.E946E 0.26 TCGA-CM-5863-01 14 77793211 77793211 C T GSTZ1 Missense_Mutation p.T33M 0.21 tolerated(0.11) benign(0.012) TCGA-CM-5863-01 15 28447514 28447514 C T HERC2 Missense_Mutation p.G2487R 0.17 benign(0.177) TCGA-CM-5863-01 15 29346703 29346703 G A APBA2 Missense_Mutation p.G206S 0.19 tolerated_low_confidence(0.28) benign(0.002) TCGA-CM-5863-01 15 42041864 42041865 CT - MGA Frame_Shift_Del p.L2021Efs*2 0.24 TCGA-CM-5863-01 15 66625618 66625618 C T DIS3L Missense_Mutation p.L1045F 0.11 deleterious(0.01) probably_damaging(0.964) TCGA-CM-5863-01 15 79588591 79588591 G A ANKRD34C 3'UTR 0.38 TCGA-CM-5863-01 15 85656623 85656623 G T PDE8A Missense_Mutation p.R377L 0.44 deleterious(0) possibly_damaging(0.749) TCGA-CM-5863-01 16 26147193 26147193 G A HS3ST4 Missense_Mutation p.R332Q 0.25 tolerated(0.21) probably_damaging(0.987) TCGA-CM-5863-01 17 10426980 10426980 C T MYH2 Missense_Mutation p.A1769T 0.37 deleterious(0.05) possibly_damaging(0.844) TCGA-CM-5863-01 17 18882883 18882883 C T FAM83G Missense_Mutation p.R265Q 0.52 deleterious(0) probably_damaging(0.989) TCGA-CM-5863-01 17 3324174 3324174 G A OR3A3 Missense_Mutation p.A105T 0.59 deleterious(0.02) benign(0.397) TCGA-CM-5863-01 17 34091700 34091700 T C C17orf50 3'UTR 0.30 TCGA-CM-5863-01 17 40957827 40957827 G A CNTD1 Missense_Mutation p.V169I 0.27 tolerated(0.41) benign(0.076) TCGA-CM-5863-01 17 56282837 56282837 A C MKS1 3'UTR 0.30 TCGA-CM-5863-01 17 71443797 71443797 G A SDK2 Silent p.N190N 0.32 TCGA-CM-5863-01 17 72589337 72589337 G T C17orf77 3'UTR 0.12 TCGA-CM-5863-01 17 7579312 7579312 C T TP53 Silent p.T125T 0.11 TCGA-CM-5863-01 18 14808711 14808711 T G ANKRD30B Intron 0.25 TCGA-CM-5863-01 18 706546 706546 G A ENOSF1 Silent p.V60V 0.14 TCGA-CM-5863-01 19 1032568 1032568 T C CNN2 Missense_Mutation p.L88P 0.08 deleterious(0) probably_damaging(0.985) TCGA-CM-5863-01 19 36303396 36303396 G A PRODH2 Silent p.S155S 0.10 TCGA-CM-5863-01 1 15421387 15421387 G A KAZN Missense_Mutation p.R502H 0.16 deleterious(0) possibly_damaging(0.521) TCGA-CM-5863-01 1 226924248 226924248 C T ITPKB Silent p.T304T 0.36 TCGA-CM-5863-01 1 236590709 236590709 A C EDARADD Missense_Mutation p.I60L 0.41 tolerated(0.14) benign(0.002) TCGA-CM-5863-01 1 245848860 245848860 G A KIF26B Missense_Mutation p.E859K 0.14 deleterious(0) unknown(0) TCGA-CM-5863-01 1 7723901 7723901 G A CAMTA1 Missense_Mutation p.V432I 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-CM-5863-01 20 4837565 4837565 A G SLC23A2 3'UTR 0.18 TCGA-CM-5863-01 21 32202006 32202006 G A KRTAP7-1 RNA 0.22 TCGA-CM-5863-01 21 39086676 39086676 C T KCNJ6 Missense_Mutation p.V262I 0.19 deleterious(0.05) possibly_damaging(0.521) TCGA-CM-5863-01 21 46131471 46131471 C A TSPEAR 5'UTR 0.32 TCGA-CM-5863-01 22 45914607 45914607 G A FBLN1 Missense_Mutation p.R42Q 0.29 tolerated(0.71) possibly_damaging(0.857) TCGA-CM-5863-01 2 101609869 101609869 C T NPAS2 Silent p.S724S 0.39 TCGA-CM-5863-01 2 179513996 179513997 - T TTN Frame_Shift_Ins p.P13346Tfs*13 0.08 TCGA-CM-5863-01 2 19553073 19553073 C G OSR1 Missense_Mutation p.G165A 0.30 deleterious(0.04) possibly_damaging(0.54) TCGA-CM-5863-01 2 198266753 198266753 C A SF3B1 Missense_Mutation p.V727L 0.42 deleterious(0) possibly_damaging(0.725) TCGA-CM-5863-01 2 223160265 223160265 G A PAX3 Nonsense_Mutation p.R145* 0.09 TCGA-CM-5863-01 2 29294938 29294938 G A C2orf71 Silent p.S730S 0.21 TCGA-CM-5863-01 2 56108765 56108765 G A EFEMP1 Nonsense_Mutation p.R208* 0.30 TCGA-CM-5863-01 3 114014633 114014633 C T TIGIT Silent p.N101N 0.34 TCGA-CM-5863-01 3 121712427 121712427 A G ILDR1 Missense_Mutation p.L390S 0.12 tolerated(0.63) benign(0.001) TCGA-CM-5863-01 3 124692664 124692664 G A HEG1 Missense_Mutation p.R1303C 0.17 deleterious(0) probably_damaging(1) TCGA-CM-5863-01 3 138739176 138739176 C T PRR23B Missense_Mutation p.E110K 0.16 deleterious(0.02) possibly_damaging(0.863) TCGA-CM-5863-01 3 167322116 167322116 C A WDR49 Missense_Mutation p.D26Y 0.17 deleterious(0) probably_damaging(1) TCGA-CM-5863-01 3 55052237 55052237 G T CACNA2D3 Missense_Mutation p.Q960H 0.27 tolerated(0.54) benign(0.007) TCGA-CM-5863-01 3 58135722 58135722 C T FLNB Silent p.H2110H 0.12 TCGA-CM-5863-01 3 66421713 66421713 G A SLC25A26 Intron 0.08 TCGA-CM-5863-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.25 TCGA-CM-5863-01 5 112175756 112175756 T - APC Frame_Shift_Del p.L1489Yfs*18 0.29 TCGA-CM-5863-01 5 131977943 131977943 C T RAD50 Missense_Mutation p.L1276F 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-CM-5863-01 5 135391397 135391397 C T TGFBI Missense_Mutation p.A480V 0.29 tolerated(1) benign(0.042) TCGA-CM-5863-01 5 140167745 140167745 G A PCDHA1 Missense_Mutation p.V624M 0.12 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-CM-5863-01 5 140725339 140725339 G A PCDHGA3 Missense_Mutation p.R580H 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.896) TCGA-CM-5863-01 5 176637845 176637845 C T NSD1 Silent p.C815C 0.10 TCGA-CM-5863-01 5 192470 192470 C T LRRC14B Missense_Mutation p.R273W 0.36 tolerated(0.11) benign(0) TCGA-CM-5863-01 5 38953610 38953610 C A RICTOR Missense_Mutation p.D915Y 0.35 deleterious(0.05) probably_damaging(0.991) TCGA-CM-5863-01 5 44815134 44815134 G A MRPS30 Missense_Mutation p.D384N 0.10 deleterious(0.04) benign(0.395) TCGA-CM-5863-01 5 56152535 56152535 G A MAP3K1 Nonsense_Mutation p.W197* 0.07 TCGA-CM-5863-01 6 142399737 142399737 G A NMBR Silent p.S242S 0.13 TCGA-CM-5863-01 6 152555867 152555867 G T SYNE1 Missense_Mutation p.T6822N 0.31 benign(0.001) TCGA-CM-5863-01 6 152749465 152749465 C A SYNE1 Missense_Mutation p.R1617S 0.15 benign(0.046) TCGA-CM-5863-01 6 152749466 152749466 C A SYNE1 Missense_Mutation p.R1617M 0.15 benign(0.376) TCGA-CM-5863-01 6 30652907 30652907 C T PPP1R18 Missense_Mutation p.E297K 0.17 deleterious_low_confidence(0.01) benign(0.129) TCGA-CM-5863-01 6 65300912 65300912 T G EYS Missense_Mutation p.E1616D 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.866) TCGA-CM-5863-01 7 139102371 139102371 A G LUC7L2 Silent p.K365K 0.09 TCGA-CM-5863-01 7 44269016 44269016 G A CAMK2B Missense_Mutation p.P437L 0.32 tolerated_low_confidence(0.78) benign(0.012) TCGA-CM-5863-01 8 86357402 86357402 C T CA3 Silent p.G154G 0.23 TCGA-CM-5863-01 X 108887387 108887387 G A ACSL4 Silent p.I669I 0.11 TCGA-CM-5863-01 X 135122270 135122270 C T SLC9A6 Missense_Mutation p.P588L 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-CM-5863-01 X 154290229 154290229 G C CMC4 Missense_Mutation p.I32M 0.21 tolerated(0.07) benign(0.247) TCGA-CM-5863-01 X 38147138 38147138 C T RPGR Missense_Mutation p.E577K 0.08 possibly_damaging(0.591) TCGA-CM-5863-01 X 38664759 38664759 C T MID1IP1 3'UTR 0.12 TCGA-CM-5863-01 X 47430312 47430312 G A ARAF Silent p.P529P 0.14 TCGA-CM-5863-01 X 53225900 53225900 C T KDM5C Nonsense_Mutation p.W983* 0.29 TCGA-CM-5863-01 X 73438229 73438229 G A MIR421 RNA 0.09 TCGA-CM-5863-01 X 78426633 78426633 A G GPR174 Silent p.V43V 0.13 TCGA-CM-5863-01 X 92926824 92926824 G T NAP1L3 Missense_Mutation p.Q494K 0.05 tolerated_low_confidence(0.47) benign(0) TCGA-CM-5864-01 10 106113602 106113602 C A CCDC147 5'UTR 0.34 TCGA-CM-5864-01 10 112641284 112641284 C T PDCD4 Missense_Mutation p.P113S 0.25 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 10 11356115 11356115 C T CELF2 Silent p.T330T 0.12 TCGA-CM-5864-01 10 13276217 13276217 G A UCMA Silent p.A14A 0.65 TCGA-CM-5864-01 10 35464850 35464850 C A CREM Intron 0.35 TCGA-CM-5864-01 10 42965635 42965635 C A CCNYL2 RNA 0.39 TCGA-CM-5864-01 10 61028320 61028320 T G FAM13C Missense_Mutation p.K312T 0.27 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 10 73052273 73052273 C T UNC5B Silent p.Y578Y 0.30 TCGA-CM-5864-01 10 7608336 7608336 G A ITIH5 Silent p.P728P 0.58 TCGA-CM-5864-01 11 1031910 1031910 G A MUC6 Missense_Mutation p.R87W 0.32 unknown(0) TCGA-CM-5864-01 11 105481671 105481671 G A GRIA4 5'UTR 0.55 TCGA-CM-5864-01 11 14480097 14480097 C G COPB1 Missense_Mutation p.R928T 0.29 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 11 16838810 16838810 T G PLEKHA7 Missense_Mutation p.E468A 0.28 tolerated(0.08) possibly_damaging(0.579) TCGA-CM-5864-01 11 32417850 32417850 C T WT1 Missense_Mutation p.R401K 0.24 tolerated_low_confidence(0.05) probably_damaging(0.993) TCGA-CM-5864-01 11 34482802 34482802 G A CAT Missense_Mutation p.R354H 0.24 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 11 34904916 34904916 C A APIP Silent p.V199V 0.23 TCGA-CM-5864-01 11 639464 639464 G A DRD4 Missense_Mutation p.R106H 0.18 tolerated(0.54) unknown(0) TCGA-CM-5864-01 11 64701230 64701230 C T PPP2R5B Missense_Mutation p.R470C 0.09 deleterious(0.02) possibly_damaging(0.689) TCGA-CM-5864-01 11 65546219 65546219 G A AP5B1 Missense_Mutation p.A582V 0.39 tolerated(0.38) benign(0.382) TCGA-CM-5864-01 11 65793649 65793649 C T CATSPER1 Missense_Mutation p.D68N 0.28 tolerated(0.1) benign(0.052) TCGA-CM-5864-01 11 686860 686860 G A DEAF1 Nonsense_Mutation p.Q268* 0.16 TCGA-CM-5864-01 11 68704399 68704399 G A IGHMBP2 Silent p.Q817Q 0.29 TCGA-CM-5864-01 11 72418302 72418302 G A ARAP1 Silent p.N547N 0.20 TCGA-CM-5864-01 11 75316913 75316913 G T MAP6 Missense_Mutation p.T419N 0.20 tolerated(0.15) benign(0.142) TCGA-CM-5864-01 11 92616548 92616548 C T FAT3 Missense_Mutation p.A4309V 0.25 benign(0.001) TCGA-CM-5864-01 12 108011123 108011123 C G BTBD11 Missense_Mutation p.P714R 0.08 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 12 109017020 109017020 C T SELPLG Missense_Mutation p.R371H 0.55 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 12 110783186 110783186 A T ATP2A2 Missense_Mutation p.S914C 0.48 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 12 133372623 133372623 C A GOLGA3 Missense_Mutation p.A762S 0.26 tolerated(0.8) benign(0.09) TCGA-CM-5864-01 12 18699326 18699326 C G PIK3C2G Missense_Mutation p.P1143A 0.07 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 12 29628041 29628041 T G OVCH1 Missense_Mutation p.K518T 0.26 tolerated(0.05) benign(0.006) TCGA-CM-5864-01 12 29648265 29648265 A T OVCH1 Missense_Mutation p.M136K 0.17 deleterious(0.01) possibly_damaging(0.6) TCGA-CM-5864-01 12 41352943 41352943 C T CNTN1 Nonsense_Mutation p.R571* 0.13 TCGA-CM-5864-01 12 41418962 41418962 G T CNTN1 Missense_Mutation p.W845L 0.39 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 12 49418644 49418644 G A KMT2D Silent p.G5290G 0.31 TCGA-CM-5864-01 12 58125422 58125422 G A AGAP2 Missense_Mutation p.R653C 0.58 deleterious(0) probably_damaging(0.997) TCGA-CM-5864-01 12 77449817 77449817 C G E2F7 Missense_Mutation p.E63Q 0.04 deleterious(0.01) possibly_damaging(0.838) TCGA-CM-5864-01 13 110835537 110835537 G T COL4A1 Missense_Mutation p.P662T 0.28 benign(0.002) TCGA-CM-5864-01 13 34410505 34410505 G T RFC3 3'UTR 0.18 TCGA-CM-5864-01 13 35806757 35806757 G T NBEA Splice_Site p.X1926_splice 0.14 TCGA-CM-5864-01 13 42769138 42769138 G T DGKH Missense_Mutation p.R718I 0.51 tolerated(0.14) possibly_damaging(0.897) TCGA-CM-5864-01 13 43360902 43360902 C T FAM216B Missense_Mutation p.L35F 0.45 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 13 51918521 51918521 C T SERPINE3 Silent p.H130H 0.59 TCGA-CM-5864-01 13 61987064 61987064 C A PCDH20 Missense_Mutation p.V390F 0.63 tolerated(0.09) possibly_damaging(0.516) TCGA-CM-5864-01 13 77700455 77700455 C A MYCBP2 Nonsense_Mutation p.E2590* 0.14 TCGA-CM-5864-01 14 101005251 101005251 C T BEGAIN Silent p.P279P 0.20 TCGA-CM-5864-01 14 105352959 105352959 G A CEP170B Missense_Mutation p.A795T 0.19 tolerated(1) benign(0.001) TCGA-CM-5864-01 14 105965244 105965244 C A C14orf80 Silent p.A414A 0.27 TCGA-CM-5864-01 14 20897099 20897099 C T KLHL33 Missense_Mutation p.R504Q 0.42 tolerated(0.29) possibly_damaging(0.862) TCGA-CM-5864-01 14 22038816 22038816 T G OR10G3 Silent p.P20P 0.19 TCGA-CM-5864-01 14 23549704 23549704 C A ACIN1 Silent p.G338G 0.22 TCGA-CM-5864-01 14 23778280 23778280 G T BCL2L2 3'UTR 0.17 TCGA-CM-5864-01 14 24505743 24505743 C G RP11-468E2.9 RNA 0.24 TCGA-CM-5864-01 14 24600706 24600706 G C RP11-468E2.6 Missense_Mutation p.R166S 0.67 tolerated_low_confidence(0.09) benign(0.001) TCGA-CM-5864-01 14 30108047 30108047 C A PRKD1 Nonsense_Mutation p.G254* 0.22 TCGA-CM-5864-01 14 64998667 64998667 T C RP11-973N13.4 Intron 0.25 TCGA-CM-5864-01 14 79933626 79933626 G A NRXN3 Missense_Mutation p.D736N 0.39 deleterious(0.04) benign(0.004) TCGA-CM-5864-01 14 89878525 89878525 G T FOXN3 Missense_Mutation p.A99D 0.25 deleterious(0.01) possibly_damaging(0.623) TCGA-CM-5864-01 14 94595606 94595606 C T IFI27L2 Silent p.V10V 0.12 TCGA-CM-5864-01 15 23444021 23444021 C A AC100757.1 5'Flank 0.20 TCGA-CM-5864-01 15 23811142 23811142 C A MKRN3 Silent p.G71G 0.12 TCGA-CM-5864-01 15 28992996 28992996 G A WHAMMP2 RNA 0.20 TCGA-CM-5864-01 15 40916121 40916121 G A CASC5 Missense_Mutation p.G1246E 0.72 tolerated(1) benign(0) TCGA-CM-5864-01 15 43571866 43571866 G T TGM7 Silent p.P545P 0.75 TCGA-CM-5864-01 15 43817315 43817315 A T MAP1A Missense_Mutation p.K1215M 0.21 probably_damaging(0.999) TCGA-CM-5864-01 15 52611292 52611292 C T MYO5A Silent p.K1708K 0.31 TCGA-CM-5864-01 15 56992977 56992977 G C ZNF280D Intron 0.39 TCGA-CM-5864-01 15 79320117 79320117 G T RASGRF1 Silent p.I449I 0.33 TCGA-CM-5864-01 15 83935802 83935802 G T BNC1 Missense_Mutation p.P74H 0.28 tolerated(0.71) benign(0.439) TCGA-CM-5864-01 15 85431067 85431067 G C SLC28A1 Missense_Mutation p.A26P 0.31 tolerated(0.33) possibly_damaging(0.83) TCGA-CM-5864-01 15 89430496 89430496 G T HAPLN3 Missense_Mutation p.L12M 0.34 deleterious(0.03) unknown(0) TCGA-CM-5864-01 15 89738499 89738499 G C ABHD2 Missense_Mutation p.G375R 0.30 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 16 2259474 2259474 G A BRICD5 Intron 0.26 TCGA-CM-5864-01 16 31106947 31106947 C T VKORC1 5'Flank 0.32 TCGA-CM-5864-01 16 51173976 51173976 G A SALL1 Silent p.S719S 0.18 TCGA-CM-5864-01 16 58438533 58438533 A G GINS3 Missense_Mutation p.N223S 0.19 tolerated(0.11) benign(0.039) TCGA-CM-5864-01 16 67654615 67654615 C T CTCF Missense_Mutation p.R368C 0.58 deleterious(0) probably_damaging(0.998) TCGA-CM-5864-01 16 68055705 68055705 C A DDX28 Missense_Mutation p.E467D 0.31 tolerated(0.08) benign(0.049) TCGA-CM-5864-01 16 68293131 68293131 G A PLA2G15 Silent p.L270L 0.57 TCGA-CM-5864-01 16 69368447 69368447 C G RP11-343C2.12 Missense_Mutation p.A110P 0.53 tolerated(0.13) possibly_damaging(0.477) TCGA-CM-5864-01 16 76523714 76523714 C T CNTNAP4 Missense_Mutation p.R599C 0.49 tolerated(0.08) possibly_damaging(0.462) TCGA-CM-5864-01 17 16248016 16248016 G A CENPV Missense_Mutation p.H197Y 0.29 tolerated(0.33) benign(0.006) TCGA-CM-5864-01 17 16725462 16725462 C T AC022596.6 RNA 0.13 TCGA-CM-5864-01 17 33768869 33768869 C G SLFN13 Missense_Mutation p.Q545H 0.09 deleterious(0.02) possibly_damaging(0.681) TCGA-CM-5864-01 17 35872743 35872743 C T DUSP14 Silent p.I123I 0.20 TCGA-CM-5864-01 17 41245107 41245107 A G BRCA1 Missense_Mutation p.L814P 0.17 tolerated(0.1) benign(0.063) TCGA-CM-5864-01 17 46670799 46670799 C T HOXB5 Silent p.E82E 0.29 TCGA-CM-5864-01 17 49072528 49072528 C T SPAG9 Missense_Mutation p.V706I 0.24 tolerated(1) benign(0.002) TCGA-CM-5864-01 17 53120626 53120626 T C STXBP4 Silent p.D295D 0.15 TCGA-CM-5864-01 17 55079519 55079519 T C SCPEP1 Missense_Mutation p.W425R 0.20 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 17 74078721 74078721 G A ZACN Missense_Mutation p.R409Q 0.23 tolerated_low_confidence(1) benign(0) TCGA-CM-5864-01 17 74878255 74878255 C A MGAT5B Silent p.R79R 0.61 TCGA-CM-5864-01 17 7489278 7489278 G A MPDU1 Missense_Mutation p.V62M 0.23 deleterious(0) possibly_damaging(0.654) TCGA-CM-5864-01 17 75202455 75202455 C A SEC14L1 Silent p.P438P 0.65 TCGA-CM-5864-01 17 7577138 7577138 C A TP53 Missense_Mutation p.R267L 0.25 deleterious(0) probably_damaging(0.973) TCGA-CM-5864-01 17 7578455 7578455 C G TP53 Missense_Mutation p.A159P 0.54 deleterious(0) probably_damaging(0.991) TCGA-CM-5864-01 18 120732 120732 G A ROCK1P1 RNA 0.06 TCGA-CM-5864-01 18 32888472 32888472 C T ZNF271 RNA 0.46 TCGA-CM-5864-01 18 76754839 76754839 G A SALL3 Missense_Mutation p.A950T 0.30 tolerated(0.12) probably_damaging(0.932) TCGA-CM-5864-01 19 12987105 12987105 C T DNASE2 Missense_Mutation p.G261D 0.33 tolerated(0.07) possibly_damaging(0.739) TCGA-CM-5864-01 19 15662197 15662197 G T CYP4F22 Missense_Mutation p.R504L 0.09 tolerated(0.14) benign(0.374) TCGA-CM-5864-01 19 16601365 16601365 C A CALR3 Missense_Mutation p.Q70H 0.27 deleterious(0.02) possibly_damaging(0.889) TCGA-CM-5864-01 19 36884359 36884359 C T ZFP82 Missense_Mutation p.A295T 0.30 tolerated(0.15) probably_damaging(0.997) TCGA-CM-5864-01 19 39230783 39230783 C T CAPN12 Missense_Mutation p.E213K 0.55 deleterious(0) benign(0.154) TCGA-CM-5864-01 19 41216022 41216022 C A ADCK4 Silent p.G103G 0.54 TCGA-CM-5864-01 19 46997472 46997472 G C PNMAL2 Silent p.T417T 0.54 TCGA-CM-5864-01 19 47920068 47920068 G A MEIS3 Missense_Mutation p.A113V 0.31 tolerated(0.24) possibly_damaging(0.596) TCGA-CM-5864-01 19 50549291 50549291 A C ZNF473 Missense_Mutation p.K531Q 0.46 tolerated(0.07) benign(0.403) TCGA-CM-5864-01 19 52273559 52273559 C T FPR2 3'UTR 0.27 TCGA-CM-5864-01 19 5768201 5768201 G C CATSPERD Missense_Mutation p.G528R 0.35 deleterious(0) probably_damaging(0.996) TCGA-CM-5864-01 1 110919627 110919627 G T SLC16A4 Missense_Mutation p.T396N 0.43 deleterious(0.01) possibly_damaging(0.616) TCGA-CM-5864-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.46 deleterious(0.01) benign(0.045) TCGA-CM-5864-01 1 11848031 11848031 G A C1orf167 Missense_Mutation p.G1283R 0.50 tolerated(0.11) probably_damaging(0.979) TCGA-CM-5864-01 1 11848032 11848032 G C C1orf167 Missense_Mutation p.G1283A 0.50 tolerated(0.08) possibly_damaging(0.899) TCGA-CM-5864-01 1 149858674 149858674 C G HIST2H2AC Silent p.V50V 0.21 TCGA-CM-5864-01 1 150526233 150526245 CAGGCCTCTGGCA - ADAMTSL4 Frame_Shift_Del p.A257Sfs*9 0.51 TCGA-CM-5864-01 1 155142286 155142286 G A KRTCAP2 Nonsense_Mutation p.R117* 0.44 TCGA-CM-5864-01 1 155162068 155162068 G C MUC1 Missense_Mutation p.T22R 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.907) TCGA-CM-5864-01 1 158549631 158549631 A G OR10X1 Missense_Mutation p.I20T 0.23 tolerated(0.56) benign(0.001) TCGA-CM-5864-01 1 159035875 159035875 C T AIM2 Missense_Mutation p.R214Q 0.44 tolerated(0.37) benign(0.002) TCGA-CM-5864-01 1 169435203 169435203 C T SLC19A2 Missense_Mutation p.A460T 0.43 deleterious(0) possibly_damaging(0.611) TCGA-CM-5864-01 1 196928056 196928056 A T CFHR2 Missense_Mutation p.K220I 0.17 tolerated(0.09) benign(0.004) TCGA-CM-5864-01 1 196928269 196928269 T A CFHR2 3'UTR 0.35 TCGA-CM-5864-01 1 207741361 207741361 G T CR1 Missense_Mutation p.S1382I 0.15 tolerated(0.12) possibly_damaging(0.629) TCGA-CM-5864-01 1 221054559 221054559 G T HLX Missense_Mutation p.G206W 0.22 deleterious(0) probably_damaging(0.933) TCGA-CM-5864-01 1 22903219 22903219 G A EPHA8 Silent p.S223S 0.49 TCGA-CM-5864-01 1 237052623 237052623 C T MTR Silent p.N998N 0.17 TCGA-CM-5864-01 1 36785906 36785906 G A SH3D21 Missense_Mutation p.G548R 0.17 deleterious(0.05) probably_damaging(0.918) TCGA-CM-5864-01 1 41483672 41483672 C T SLFNL1 Missense_Mutation p.D198N 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-CM-5864-01 1 43032040 43032040 G A CCDC30 Missense_Mutation p.R250Q 0.54 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 1 45811044 45811044 C T TESK2 Missense_Mutation p.R395H 0.50 tolerated(0.12) benign(0.001) TCGA-CM-5864-01 1 47614377 47614377 C G CYP4A22 Missense_Mutation p.P490A 0.20 tolerated(0.53) benign(0.443) TCGA-CM-5864-01 1 49193670 49193670 T G BEND5 Missense_Mutation p.E385A 0.29 deleterious(0.01) benign(0.253) TCGA-CM-5864-01 1 94930385 94930385 A G ABCD3 Missense_Mutation p.I68V 0.18 tolerated(0.5) benign(0) TCGA-CM-5864-01 20 33581995 33581995 G A MYH7B Missense_Mutation p.V873I 0.40 probably_damaging(0.994) TCGA-CM-5864-01 20 36775274 36775274 C A TGM2 Missense_Mutation p.G235V 0.12 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 20 37464776 37464776 G A PPP1R16B Missense_Mutation p.V70M 0.51 deleterious(0) probably_damaging(0.981) TCGA-CM-5864-01 20 3804803 3804803 G A AP5S1 Silent p.A154A 0.34 TCGA-CM-5864-01 20 43561136 43561136 C G PABPC1L Intron 0.49 TCGA-CM-5864-01 20 45204237 45204237 C G SLC13A3 Missense_Mutation p.G436A 0.27 deleterious(0) possibly_damaging(0.533) TCGA-CM-5864-01 20 45816766 45816766 G C EYA2 Missense_Mutation p.E534D 0.16 tolerated(0.27) benign(0.084) TCGA-CM-5864-01 20 4840031 4840031 C T SLC23A2 Splice_Site p.X542_splice 0.39 TCGA-CM-5864-01 20 62407309 62407309 T C ZBTB46 Missense_Mutation p.D315G 0.38 tolerated(0.06) benign(0.008) TCGA-CM-5864-01 21 17150266 17150266 A G USP25 Silent p.R104R 0.24 TCGA-CM-5864-01 21 31045349 31045349 A G GRIK1 Missense_Mutation p.V227A 0.24 deleterious(0) probably_damaging(0.934) TCGA-CM-5864-01 21 33725197 33725197 T C URB1 Missense_Mutation p.Y812C 0.60 deleterious(0) probably_damaging(0.998) TCGA-CM-5864-01 21 46687314 46687314 T A POFUT2 Intron 0.33 TCGA-CM-5864-01 21 47818007 47818007 C T PCNT Missense_Mutation p.A1509V 0.22 benign(0) TCGA-CM-5864-01 22 17072675 17072675 G C CCT8L2 Missense_Mutation p.P256A 0.31 tolerated(0.07) benign(0.156) TCGA-CM-5864-01 22 19026467 19026467 C T DGCR2 Missense_Mutation p.D522N 0.28 deleterious_low_confidence(0.05) benign(0.004) TCGA-CM-5864-01 22 44532358 44532358 C A PARVB Missense_Mutation p.H251N 0.40 tolerated(0.19) benign(0.012) TCGA-CM-5864-01 2 102504326 102504326 G A MAP4K4 Silent p.G1141G 0.36 TCGA-CM-5864-01 2 10264939 10264941 TCT - RRM2 In_Frame_Del p.L239del 0.39 TCGA-CM-5864-01 2 12863670 12863670 C T TRIB2 Silent p.D185D 0.48 TCGA-CM-5864-01 2 162719515 162719515 C T SLC4A10 Missense_Mutation p.R237C 0.32 deleterious(0.02) probably_damaging(0.97) TCGA-CM-5864-01 2 166786688 166786688 G A TTC21B Silent p.L361L 0.44 TCGA-CM-5864-01 2 167108307 167108307 T A SCN9A Missense_Mutation p.N1136I 0.37 deleterious(0.04) possibly_damaging(0.482) TCGA-CM-5864-01 2 167162315 167162315 C T SCN9A Missense_Mutation p.V195I 0.42 tolerated(0.09) probably_damaging(1) TCGA-CM-5864-01 2 188349644 188349644 A C TFPI Nonsense_Mutation p.Y143* 0.18 TCGA-CM-5864-01 2 193059150 193059150 C T TMEFF2 Missense_Mutation p.R34H 0.35 tolerated(0.22) benign(0.284) TCGA-CM-5864-01 2 228560664 228560664 C T SLC19A3 Silent p.A371A 0.07 TCGA-CM-5864-01 2 228754586 228754586 C T DAW1 Missense_Mutation p.A43V 0.44 tolerated(0.31) benign(0.012) TCGA-CM-5864-01 2 241463548 241463548 C A ANKMY1 Missense_Mutation p.G440V 0.38 tolerated(0.11) benign(0.133) TCGA-CM-5864-01 2 242151574 242151574 G A ANO7 Missense_Mutation p.V597I 0.30 tolerated(0.1) possibly_damaging(0.527) TCGA-CM-5864-01 2 27656161 27656161 G A NRBP1 Silent p.Q7Q 0.26 TCGA-CM-5864-01 2 33413792 33413792 G A LTBP1 Silent p.G525G 0.39 TCGA-CM-5864-01 2 42931391 42931391 T C MTA3 Silent p.N361N 0.28 TCGA-CM-5864-01 2 49195856 49195856 C G FSHR Missense_Mutation p.A279P 0.08 tolerated(0.1) benign(0.012) TCGA-CM-5864-01 2 54482809 54482809 G A TSPYL6 Silent p.A160A 0.45 TCGA-CM-5864-01 2 5834032 5834032 G A SOX11 Silent p.S393S 0.32 TCGA-CM-5864-01 2 62450950 62450950 C G B3GNT2 3'UTR 0.21 TCGA-CM-5864-01 2 65454942 65454942 G C ACTR2 5'Flank 0.42 TCGA-CM-5864-01 2 70047874 70047874 C T ANXA4 Missense_Mutation p.S276F 0.20 deleterious(0) probably_damaging(0.997) TCGA-CM-5864-01 2 73786265 73786265 T G ALMS1 Missense_Mutation p.I3459M 0.34 possibly_damaging(0.89) TCGA-CM-5864-01 2 89986992 89986992 G T IGKV2D-29 Silent p.G91G 0.32 TCGA-CM-5864-01 3 127395847 127395854 TGAGCGCC - ABTB1 Frame_Shift_Del p.E189Gfs*22 0.12 TCGA-CM-5864-01 3 130107504 130107504 A C COL6A5 Missense_Mutation p.K648T 0.33 deleterious(0) probably_damaging(1) TCGA-CM-5864-01 3 153840852 153840852 G C ARHGEF26 Silent p.L357L 0.14 TCGA-CM-5864-01 3 187386923 187386923 G A SST Missense_Mutation p.P94L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5864-01 3 36875009 36875009 T C TRANK1 Missense_Mutation p.Q1978R 0.34 tolerated(0.19) benign(0.097) TCGA-CM-5864-01 3 46062372 46062372 G A XCR1 3'UTR 0.20 TCGA-CM-5864-01 3 46063343 46063343 C A XCR1 Missense_Mutation p.A33S 0.23 tolerated(0.58) benign(0.001) TCGA-CM-5864-01 3 49662433 49662433 G A BSN Missense_Mutation p.E84K 0.50 unknown(0) TCGA-CM-5864-01 3 58849422 58849422 T C C3orf67 Silent p.R360R 0.07 TCGA-CM-5864-01 4 114275407 114275407 A G ANK2 Missense_Mutation p.H1878R 0.35 benign(0.012) TCGA-CM-5864-01 4 126241801 126241801 A T FAT4 Missense_Mutation p.D1412V 0.42 probably_damaging(0.987) TCGA-CM-5864-01 4 146463850 146463850 G A SMAD1 Missense_Mutation p.D259N 0.27 tolerated(0.1) benign(0.004) TCGA-CM-5864-01 4 151504764 151504764 C A MAB21L2 Missense_Mutation p.P195T 0.49 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 4 15602885 15602885 C T CC2D2A Missense_Mutation p.P1567L 0.46 deleterious(0) benign(0.253) TCGA-CM-5864-01 4 162421195 162421195 C - FSTL5 Frame_Shift_Del p.K477Nfs*62 0.22 TCGA-CM-5864-01 4 167713381 167713381 G A SPOCK3 Missense_Mutation p.L220F 0.25 deleterious(0) probably_damaging(0.996) TCGA-CM-5864-01 4 169344916 169344916 G A DDX60L Missense_Mutation p.S647L 0.21 deleterious(0.04) benign(0.009) TCGA-CM-5864-01 4 175897129 175897129 G T ADAM29 Missense_Mutation p.K151N 0.21 deleterious(0.02) benign(0.127) TCGA-CM-5864-01 4 1985605 1985605 C T NELFA Silent p.Q435Q 0.29 TCGA-CM-5864-01 4 2502466 2502466 G T RNF4 Splice_Site p.X68_splice 0.24 TCGA-CM-5864-01 4 39109339 39109339 T C KLHL5 Missense_Mutation p.V605A 0.47 tolerated(0.53) possibly_damaging(0.737) TCGA-CM-5864-01 4 39187401 39187401 G A WDR19 Nonsense_Mutation p.W21* 0.39 TCGA-CM-5864-01 4 85642695 85642695 C A WDFY3 Missense_Mutation p.R2491L 0.21 tolerated(0.31) benign(0.032) TCGA-CM-5864-01 5 1075559 1075559 T A SLC12A7 Missense_Mutation p.I632F 0.29 deleterious(0) possibly_damaging(0.756) TCGA-CM-5864-01 5 112175480 112175480 G T APC Nonsense_Mutation p.E1397* 0.86 TCGA-CM-5864-01 5 140209878 140209878 G A PCDHA6 Silent p.A734A 0.45 TCGA-CM-5864-01 5 140222202 140222202 G A PCDHA8 Silent p.S432S 0.54 TCGA-CM-5864-01 5 140242990 140242990 C T AC005609.1 5'UTR 0.31 TCGA-CM-5864-01 5 140559172 140559172 G A PCDHB8 Silent p.S519S 0.20 TCGA-CM-5864-01 5 140559235 140559235 G A PCDHB8 Silent p.P540P 0.05 TCGA-CM-5864-01 5 143853513 143853513 G A KCTD16 Missense_Mutation p.E375K 0.31 tolerated(0.22) benign(0.214) TCGA-CM-5864-01 5 26988344 26988344 A G CDH9 Missense_Mutation p.S33P 0.15 tolerated(0.33) benign(0) TCGA-CM-5864-01 5 35066051 35066051 C G PRLR Missense_Mutation p.G337R 0.24 tolerated(0.5) benign(0.023) TCGA-CM-5864-01 5 36048997 36048997 T G UGT3A2 Silent p.V279V 0.22 TCGA-CM-5864-01 5 434665 434665 C T AHRR Missense_Mutation p.R626C 0.54 tolerated(0.18) possibly_damaging(0.729) TCGA-CM-5864-01 6 107824904 107824904 G C SOBP Missense_Mutation p.G47A 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5864-01 6 119147974 119147974 C G MCM9 Missense_Mutation p.V596L 0.40 deleterious(0.01) possibly_damaging(0.46) TCGA-CM-5864-01 6 121631969 121631969 A T TBC1D32 Missense_Mutation p.L174I 0.12 tolerated(0.07) benign(0.307) TCGA-CM-5864-01 6 132021950 132021950 C T OR2A4 Missense_Mutation p.V198I 0.15 tolerated(1) benign(0.045) TCGA-CM-5864-01 6 149777945 149777945 G A ZC3H12D Silent p.D179D 0.40 TCGA-CM-5864-01 6 161134139 161134139 G A PLG Missense_Mutation p.D177N 0.39 tolerated(1) benign(0.006) TCGA-CM-5864-01 6 166912095 166912095 C T RPS6KA2 Silent p.A224A 0.45 TCGA-CM-5864-01 6 18463603 18463603 C T RNF144B Nonsense_Mutation p.R255* 0.06 TCGA-CM-5864-01 6 26158372 26158372 A G HIST1H2BD 5'Flank 0.17 TCGA-CM-5864-01 6 31106182 31106182 G A PSORS1C1 Intron 0.39 TCGA-CM-5864-01 6 80626197 80626197 C T ELOVL4 3'UTR 0.19 TCGA-CM-5864-01 6 90411652 90411652 G A MDN1 Silent p.I2759I 0.28 TCGA-CM-5864-01 6 97599697 97599697 G A MMS22L Silent p.C1144C 0.15 TCGA-CM-5864-01 7 103234278 103234278 A G RELN Missense_Mutation p.W1255R 0.16 deleterious(0.01) possibly_damaging(0.696) TCGA-CM-5864-01 7 123143143 123143143 A G IQUB Missense_Mutation p.V241A 0.31 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 7 128388832 128388832 A C CALU Silent p.T73T 0.20 TCGA-CM-5864-01 7 138602684 138602684 C T KIAA1549 Missense_Mutation p.S563N 0.44 deleterious(0.01) benign(0.367) TCGA-CM-5864-01 7 148508792 148508792 A C EZH2 Silent p.S624S 0.46 TCGA-CM-5864-01 7 18875162 18875162 C T HDAC9 Missense_Mutation p.R847C 0.54 deleterious(0) probably_damaging(0.975) TCGA-CM-5864-01 7 23545111 23545111 C A TRA2A 3'UTR 0.10 TCGA-CM-5864-01 7 2584610 2584610 G A BRAT1 Silent p.S121S 0.51 TCGA-CM-5864-01 7 4002461 4002461 C A SDK1 Silent p.T469T 0.55 TCGA-CM-5864-01 7 43283484 43283484 G A HECW1 5'UTR 0.47 TCGA-CM-5864-01 7 56020921 56020921 A G MRPS17 Silent p.R11R 0.32 TCGA-CM-5864-01 7 70255788 70255788 C T AUTS2 Missense_Mutation p.R1196C 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 7 77762214 77762214 G A MAGI2 Silent p.H1065H 0.35 TCGA-CM-5864-01 7 90896134 90896134 G T FZD1 Missense_Mutation p.V647F 0.17 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-CM-5864-01 7 99022540 99022540 C G ATP5J2-PTCD1 Missense_Mutation p.A588P 0.15 deleterious(0) probably_damaging(0.999) TCGA-CM-5864-01 7 99971221 99971221 C A PILRA 5'UTR 0.20 TCGA-CM-5864-01 8 133099981 133099981 T G HHLA1 Missense_Mutation p.N235H 0.13 deleterious(0) probably_damaging(0.992) TCGA-CM-5864-01 8 145139359 145139359 G T GPAA1 Missense_Mutation p.G286V 0.63 deleterious(0.03) benign(0.094) TCGA-CM-5864-01 8 2020570 2020570 C T MYOM2 Silent p.R313R 0.78 TCGA-CM-5864-01 8 25364369 25364369 T C CDCA2 Silent p.P729P 0.64 TCGA-CM-5864-01 8 27327370 27327370 G A CHRNA2 Missense_Mutation p.R68W 0.73 deleterious(0.01) possibly_damaging(0.773) TCGA-CM-5864-01 8 3267028 3267028 G T CSMD1 Missense_Mutation p.P554Q 0.22 benign(0.002) TCGA-CM-5864-01 8 55533785 55533785 C T RP1 Missense_Mutation p.R87W 0.08 deleterious(0) probably_damaging(0.995) TCGA-CM-5864-01 8 87076285 87076285 G A PSKH2 Missense_Mutation p.A254V 0.71 tolerated(0.5) benign(0.001) TCGA-CM-5864-01 8 87393787 87393787 T A WWP1 Nonsense_Mutation p.L88* 0.15 TCGA-CM-5864-01 8 87393788 87393788 A T WWP1 Missense_Mutation p.L88F 0.15 tolerated(0.24) possibly_damaging(0.809) TCGA-CM-5864-01 9 100257990 100257990 G A TDRD7 Missense_Mutation p.R1041Q 0.19 deleterious(0) possibly_damaging(0.611) TCGA-CM-5864-01 9 107591345 107591345 A T ABCA1 Missense_Mutation p.I656N 0.09 deleterious(0) probably_damaging(0.968) TCGA-CM-5864-01 9 134350301 134350301 C A PRRC2B Missense_Mutation p.H929N 0.26 tolerated(0.39) benign(0.027) TCGA-CM-5864-01 9 139401048 139401048 G A NOTCH1 Silent p.P1315P 0.39 TCGA-CM-5864-01 9 34726310 34726310 C - FAM205A Frame_Shift_Del p.L310Sfs*9 0.49 TCGA-CM-5864-01 9 34835372 34835372 C - FAM205B RNA 0.18 TCGA-CM-5864-01 9 72501792 72501792 C T C9orf135 Missense_Mutation p.P163L 0.42 deleterious(0.03) benign(0.018) TCGA-CM-5864-01 9 82319728 82319728 C T TLE4 Nonsense_Mutation p.R214* 0.14 TCGA-CM-5864-01 9 96030988 96030988 C G WNK2 Silent p.P1331P 0.23 TCGA-CM-5864-01 X 100881142 100881142 A G ARMCX3 3'UTR 0.20 TCGA-CM-5864-01 X 134126237 134126237 C T SMIM10 3'UTR 0.36 TCGA-CM-5864-01 X 137793142 137793142 C T FGF13 Intron 0.90 TCGA-CM-5864-01 X 149671655 149671655 A G MAMLD1 Intron 0.57 TCGA-CM-5864-01 X 151818969 151818969 C G GABRQ Missense_Mutation p.T276S 0.05 tolerated(0.69) benign(0.194) TCGA-CM-5864-01 X 155003859 155003859 G T SPRY3 Missense_Mutation p.G109V 0.19 tolerated(0.06) benign(0.175) TCGA-CM-5864-01 X 21755769 21755769 G A SMPX Missense_Mutation p.A60V 0.92 tolerated_low_confidence(0.08) benign(0.061) TCGA-CM-5864-01 X 31838157 31838157 C T DMD Missense_Mutation p.R2415H 0.94 benign(0) TCGA-CM-5864-01 X 41055978 41055978 T G USP9X Missense_Mutation p.L1407R 0.86 deleterious(0) probably_damaging(0.991) TCGA-CM-5864-01 X 41057839 41057839 A C USP9X Missense_Mutation p.N1480T 0.17 tolerated(0.82) benign(0.001) TCGA-CM-5864-01 X 5821827 5821827 G T NLGN4X Silent p.R298R 0.06 TCGA-CM-5864-01 X 70320686 70320686 C A FOXO4 Missense_Mutation p.S202R 0.40 deleterious(0.01) benign(0.318) TCGA-CM-5864-01 X 79277829 79277829 A C TBX22 Missense_Mutation p.K21Q 0.29 deleterious(0.05) probably_damaging(0.999) TCGA-CM-5864-01 X 79932401 79932401 C G BRWD3 Missense_Mutation p.G1706R 0.92 tolerated_low_confidence(0.1) unknown(0) TCGA-CM-5868-01 10 32143099 32143099 A T ARHGAP12 Silent p.S328S 0.25 TCGA-CM-5868-01 10 50178256 50178256 C A WDFY4 Silent p.T2950T 0.46 TCGA-CM-5868-01 10 98823347 98823347 C T SLIT1 Missense_Mutation p.D220N 0.18 tolerated(0.11) probably_damaging(0.998) TCGA-CM-5868-01 11 107287000 107287000 G A CWF19L2 Nonsense_Mutation p.Q518* 0.15 TCGA-CM-5868-01 11 407546 407546 G A SIGIRR Silent p.Y168Y 0.08 TCGA-CM-5868-01 11 59244929 59244929 A C OR4D10 Silent p.V9V 0.42 TCGA-CM-5868-01 11 62744655 62744655 C T SLC22A6 Silent p.R522R 0.39 TCGA-CM-5868-01 11 66476405 66476405 G A SPTBN2 Missense_Mutation p.R387C 0.17 deleterious(0) probably_damaging(0.996) TCGA-CM-5868-01 11 77937863 77937863 G A GAB2 Silent p.S285S 0.27 TCGA-CM-5868-01 11 89537499 89537499 G T TRIM49 Missense_Mutation p.P47T 0.16 tolerated(0.38) benign(0.021) TCGA-CM-5868-01 12 10978097 10978097 G A TAS2R10 Silent p.L258L 0.21 TCGA-CM-5868-01 12 122018729 122018732 TAAC - KDM2B Frame_Shift_Del p.V29Yfs*77 0.43 TCGA-CM-5868-01 12 13208681 13208681 C A KIAA1467 Silent p.T78T 0.35 TCGA-CM-5868-01 12 21471851 21471851 G C SLCO1A2 Missense_Mutation p.L23V 0.19 deleterious(0.01) probably_damaging(0.939) TCGA-CM-5868-01 12 22837882 22837882 T C ETNK1 Silent p.P451P 0.16 TCGA-CM-5868-01 13 100888120 100888120 G A PCCA Missense_Mutation p.A209T 0.30 deleterious(0.01) possibly_damaging(0.661) TCGA-CM-5868-01 13 23903495 23903495 T G SACS 3'UTR 0.18 TCGA-CM-5868-01 13 25265130 25265130 C T ATP12A Silent p.T276T 0.23 TCGA-CM-5868-01 13 50590083 50590083 T G KCNRG Missense_Mutation p.W152G 0.18 tolerated(0.05) benign(0.002) TCGA-CM-5868-01 14 53513446 53513480 AAAAAATCAGTTTTAGGCCATTCATGTCCTTCAAG TAAAAAATCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.13 TCGA-CM-5868-01 14 77255624 77255624 A C ANGEL1 Missense_Mutation p.S654A 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CM-5868-01 15 55619745 55619745 T G PIGB Missense_Mutation p.L145R 0.25 deleterious(0) probably_damaging(0.989) TCGA-CM-5868-01 15 72021063 72021063 C T THSD4 Silent p.Y511Y 0.20 TCGA-CM-5868-01 16 1812374 1812374 G A MAPK8IP3 Missense_Mutation p.R520H 0.15 deleterious(0) probably_damaging(0.998) TCGA-CM-5868-01 16 57269050 57269050 C T RSPRY1 Missense_Mutation p.A515V 0.38 tolerated(0.08) probably_damaging(0.994) TCGA-CM-5868-01 16 72830611 72830611 C T ZFHX3 Silent p.K1990K 0.35 TCGA-CM-5868-01 16 89354948 89354948 G A ANKRD11 Silent p.N244N 0.38 TCGA-CM-5868-01 17 1559844 1559844 A G PRPF8 Missense_Mutation p.F1879L 0.10 deleterious(0) possibly_damaging(0.715) TCGA-CM-5868-01 17 18653079 18653079 A C FBXW10 Silent p.R239R 0.18 TCGA-CM-5868-01 17 37902163 37902163 C G GRB7 Intron 0.34 TCGA-CM-5868-01 17 40265766 40265766 G A KAT2A Silent p.R805R 0.29 TCGA-CM-5868-01 17 67519669 67519669 A G MAP2K6 Missense_Mutation p.N184D 0.13 deleterious(0) probably_damaging(0.996) TCGA-CM-5868-01 17 68171569 68171569 C A KCNJ2 Missense_Mutation p.T130K 0.04 deleterious(0.04) possibly_damaging(0.776) TCGA-CM-5868-01 17 72947697 72947697 C T HID1 Missense_Mutation p.D779N 0.21 tolerated(0.24) benign(0.032) TCGA-CM-5868-01 17 74392209 74392209 A G UBE2O Missense_Mutation p.S937P 0.11 tolerated(0.12) benign(0.007) TCGA-CM-5868-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.57 deleterious(0) probably_damaging(0.997) TCGA-CM-5868-01 18 48593557 48593557 G T SMAD4 Missense_Mutation p.K436N 0.59 deleterious(0) probably_damaging(0.989) TCGA-CM-5868-01 19 10624866 10624866 G A S1PR5 Silent p.D274D 0.36 TCGA-CM-5868-01 19 36224554 36224554 G A KMT2B Missense_Mutation p.R2339Q 0.37 benign(0) TCGA-CM-5868-01 19 36333098 36333098 C T NPHS1 Missense_Mutation p.R864H 0.25 tolerated(0.06) possibly_damaging(0.581) TCGA-CM-5868-01 19 39435613 39435613 C T CTC-360G5.8 Missense_Mutation p.R135Q 0.18 tolerated_low_confidence(0.06) benign(0.089) TCGA-CM-5868-01 19 46094048 46094048 C T GPR4 Silent p.P359P 0.21 TCGA-CM-5868-01 19 48664711 48664711 T C LIG1 Missense_Mutation p.K54R 0.08 deleterious_low_confidence(0.02) benign(0.007) TCGA-CM-5868-01 19 53885304 53885304 G A ZNF525 3'UTR 0.22 TCGA-CM-5868-01 19 54933460 54933460 G A TTYH1 Missense_Mutation p.A172T 0.35 tolerated(0.36) benign(0.018) TCGA-CM-5868-01 19 56935583 56935583 C T ZNF583 Missense_Mutation p.P519L 0.39 deleterious(0.02) probably_damaging(1) TCGA-CM-5868-01 19 58438355 58438356 AT - ZNF418 Frame_Shift_Del p.Y398* 0.13 TCGA-CM-5868-01 19 8576833 8576833 C T ZNF414 Missense_Mutation p.C181Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-CM-5868-01 19 9074563 9074563 C T MUC16 Missense_Mutation p.E4295K 0.43 unknown(0) TCGA-CM-5868-01 1 155706811 155706811 T C DAP3 Silent p.C356C 0.16 TCGA-CM-5868-01 1 17331888 17331888 A G ATP13A2 Missense_Mutation p.I90T 0.43 deleterious(0) probably_damaging(0.969) TCGA-CM-5868-01 1 24710421 24710421 T C STPG1 Missense_Mutation p.K88E 0.18 deleterious(0.01) possibly_damaging(0.661) TCGA-CM-5868-01 1 248844881 248844882 - G OR14I1 Frame_Shift_Ins p.Q242Pfs*48 0.23 TCGA-CM-5868-01 1 6191711 6191711 T C CHD5 Missense_Mutation p.E1081G 0.10 deleterious(0.01) probably_damaging(0.964) TCGA-CM-5868-01 1 99771795 99771795 C T LPPR4 Silent p.G507G 0.23 TCGA-CM-5868-01 20 36365803 36365803 A G CTNNBL1 Silent p.S81S 0.49 TCGA-CM-5868-01 20 40054021 40054021 G A CHD6 Silent p.S1381S 0.46 TCGA-CM-5868-01 20 4764882 4764882 G A RASSF2 3'UTR 0.30 TCGA-CM-5868-01 20 55748160 55748160 C - BMP7 Intron 0.39 TCGA-CM-5868-01 20 58491593 58491593 C T SYCP2 Missense_Mutation p.R154H 0.11 tolerated(0.05) benign(0.035) TCGA-CM-5868-01 20 61391603 61391603 G A NTSR1 Missense_Mutation p.R414H 0.18 deleterious(0.02) probably_damaging(0.935) TCGA-CM-5868-01 20 62129093 62129093 G A EEF1A2 Silent p.I8I 0.07 TCGA-CM-5868-01 21 46117242 46117242 C T KRTAP10-12 Silent p.C42C 0.35 TCGA-CM-5868-01 2 100019501 100019501 T - REV1 Frame_Shift_Del p.T1079Pfs*12 0.31 TCGA-CM-5868-01 2 130897781 130897781 A G CCDC74B Missense_Mutation p.W283R 0.18 deleterious(0) probably_damaging(0.999) TCGA-CM-5868-01 2 179650418 179650418 G A TTN Missense_Mutation p.R808C 0.40 TCGA-CM-5868-01 2 207170692 207170692 T A ZDBF2 Silent p.I480I 0.21 TCGA-CM-5868-01 2 233398783 233398783 G A CHRND Missense_Mutation p.S397N 0.40 deleterious(0) probably_damaging(0.995) TCGA-CM-5868-01 2 241689870 241689870 G A KIF1A Missense_Mutation p.R985C 0.18 deleterious(0) probably_damaging(0.928) TCGA-CM-5868-01 2 28865838 28865838 G T PLB1 Missense_Mutation p.V1430L 0.19 tolerated(0.27) benign(0.005) TCGA-CM-5868-01 2 29498350 29498350 C T ALK Silent p.Q610Q 0.34 TCGA-CM-5868-01 2 36669756 36669756 A G CRIM1 Splice_Site p.X250_splice 0.31 TCGA-CM-5868-01 2 39088959 39088959 C A DHX57 Missense_Mutation p.R198L 0.18 tolerated(0.05) benign(0.038) TCGA-CM-5868-01 3 10283957 10283957 G A IRAK2 3'UTR 0.15 TCGA-CM-5868-01 3 119634961 119634961 G A GSK3B Missense_Mutation p.R180W 0.33 deleterious(0) probably_damaging(1) TCGA-CM-5868-01 3 128852987 128852987 G T ISY1 Missense_Mutation p.A220E 0.37 tolerated(0.3) benign(0.015) TCGA-CM-5868-01 3 128987438 128987438 G A COPG1 Silent p.T583T 0.18 TCGA-CM-5868-01 3 129289674 129289674 C T PLXND1 Silent p.S1235S 0.24 TCGA-CM-5868-01 3 146307487 146307487 G T PLSCR5 Missense_Mutation p.L244I 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-CM-5868-01 3 152883464 152883464 G A RAP2B 3'UTR 0.15 TCGA-CM-5868-01 3 16646869 16646869 C T DAZL 5'Flank 0.18 TCGA-CM-5868-01 3 178560566 178560566 G T KCNMB2 Missense_Mutation p.K183N 0.23 tolerated(0.09) probably_damaging(0.998) TCGA-CM-5868-01 3 192125845 192125845 G A FGF12 Silent p.S56S 0.25 TCGA-CM-5868-01 3 49739836 49739836 G A RNF123 Missense_Mutation p.G543R 0.25 tolerated(0.15) probably_damaging(1) TCGA-CM-5868-01 3 51505005 51505005 C A VPRBP Nonsense_Mutation p.E43* 0.37 TCGA-CM-5868-01 3 78737896 78737896 G A ROBO1 Missense_Mutation p.R358C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CM-5868-01 4 110608696 110608696 G A CCDC109B Missense_Mutation p.R320H 0.59 deleterious(0.01) benign(0.191) TCGA-CM-5868-01 4 73990982 73990982 G A ANKRD17 Silent p.G1094G 0.22 TCGA-CM-5868-01 4 88583970 88583970 C A DMP1 Nonsense_Mutation p.S347* 0.23 TCGA-CM-5868-01 5 112174412 112174412 C T APC Nonsense_Mutation p.Q1041* 0.64 TCGA-CM-5868-01 5 140175902 140175902 C T PCDHA2 Silent p.N451N 0.24 TCGA-CM-5868-01 5 150923669 150923669 T A FAT2 Missense_Mutation p.E2340V 0.37 probably_damaging(1) TCGA-CM-5868-01 5 159821440 159821440 A T C5orf54 Missense_Mutation p.F353Y 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-CM-5868-01 5 16067508 16067508 G T MARCH11 3'UTR 0.21 TCGA-CM-5868-01 5 178309929 178309929 A C ZNF354B Missense_Mutation p.K159T 0.04 tolerated(0.19) benign(0.341) TCGA-CM-5868-01 5 251146 251146 G A SDHA Missense_Mutation p.V531M 0.22 deleterious_low_confidence(0.01) benign(0.273) TCGA-CM-5868-01 5 36955580 36955580 A G NIPBL Missense_Mutation p.N24S 0.46 tolerated(0.31) probably_damaging(0.979) TCGA-CM-5868-01 6 26124106 26124106 G T HIST1H2BC Silent p.P9P 0.49 TCGA-CM-5868-01 6 53989559 53989559 C T MLIP Silent p.L170L 0.25 TCGA-CM-5868-01 6 74475707 74475707 A G CD109 Missense_Mutation p.N388D 0.23 tolerated(0.55) benign(0.002) TCGA-CM-5868-01 7 127668895 127668895 G A LRRC4 Missense_Mutation p.T600I 0.45 tolerated_low_confidence(0.17) benign(0.028) TCGA-CM-5868-01 7 135419014 135419014 G A FAM180A Silent p.D77D 0.28 TCGA-CM-5868-01 7 143095859 143095859 G A EPHA1 Missense_Mutation p.H391Y 0.08 tolerated(0.07) benign(0.004) TCGA-CM-5868-01 7 150554555 150554555 G A AOC1 Missense_Mutation p.G333R 0.21 deleterious(0) probably_damaging(1) TCGA-CM-5868-01 7 22165268 22165268 G A RAPGEF5 Silent p.I677I 0.49 TCGA-CM-5868-01 7 33028239 33028239 C T FKBP9 Silent p.H338H 0.32 TCGA-CM-5868-01 7 64167293 64167293 C A ZNF107 Missense_Mutation p.T204N 0.10 tolerated(0.19) benign(0.375) TCGA-CM-5868-01 7 98957274 98957274 C T ARPC1A Missense_Mutation p.A299V 0.20 deleterious(0.03) benign(0.1) TCGA-CM-5868-01 8 142450373 142450373 C T CTD-3064M3.7 3'Flank 0.77 TCGA-CM-5868-01 8 144732836 144732836 G T ZNF623 Missense_Mutation p.C265F 0.32 deleterious(0) probably_damaging(0.998) TCGA-CM-5868-01 8 145642080 145642080 G C SLC39A4 Missense_Mutation p.L32V 0.13 tolerated(0.35) possibly_damaging(0.671) TCGA-CM-5868-01 8 87878810 87878810 A T CNBD1 Silent p.P29P 0.09 TCGA-CM-5868-01 9 123685986 123685986 C A TRAF1 Missense_Mutation p.E75D 0.16 tolerated(0.18) benign(0.013) TCGA-CM-5868-01 9 136266956 136266956 G A C9orf96 Missense_Mutation p.E430K 0.77 deleterious(0.04) benign(0.012) TCGA-CM-5868-01 9 140991049 140991049 C T CACNA1B Silent p.Y1736Y 0.16 TCGA-CM-5868-01 9 98002987 98002987 G C FANCC Missense_Mutation p.L97V 0.07 deleterious(0) benign(0.357) TCGA-CM-5868-01 X 103041548 103041548 A T PLP1 Missense_Mutation p.T116S 0.09 tolerated(0.37) possibly_damaging(0.715) TCGA-CM-5868-01 X 109697563 109697563 T C RGAG1 Missense_Mutation p.C1240R 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-5868-01 X 111699099 111699099 T A ZCCHC16 3'UTR 0.13 TCGA-CM-5868-01 X 114426520 114426520 G T RBMXL3 Missense_Mutation p.S839I 0.31 deleterious_low_confidence(0.01) benign(0.403) TCGA-CM-5868-01 X 128946754 128946754 G A ZDHHC9 Silent p.V239V 0.43 TCGA-CM-5868-01 X 129306283 129306283 G A RAB33A Missense_Mutation p.E83K 0.21 tolerated(0.09) benign(0.344) TCGA-CM-5868-01 X 134654868 134654868 G A DDX26B 5'UTR 0.09 TCGA-CM-5868-01 X 146312245 146312245 C T MIR506 RNA 0.43 TCGA-CM-5868-01 X 149639572 149639572 C T MAMLD1 Missense_Mutation p.P551L 0.11 deleterious(0) benign(0.27) TCGA-CM-5868-01 X 150844514 150844514 G T PASD1 Missense_Mutation p.A741S 0.07 deleterious(0.02) possibly_damaging(0.567) TCGA-CM-5868-01 X 152614935 152614935 C T ZNF275 3'UTR 0.13 TCGA-CM-5868-01 X 153130782 153130782 G A L1CAM Silent p.S907S 0.21 TCGA-CM-5868-01 X 153678864 153678864 C A FAM50A 3'UTR 0.07 TCGA-CM-5868-01 X 30849519 30849519 C A TAB3 3'UTR 0.10 TCGA-CM-5868-01 X 3238128 3238128 G T MXRA5 Silent p.T1866T 0.47 TCGA-CM-5868-01 X 49022636 49022637 - C MAGIX Frame_Shift_Ins p.W303Lfs*105 0.18 TCGA-CM-5868-01 X 6069120 6069120 C T NLGN4X Missense_Mutation p.A130T 0.51 tolerated(0.56) benign(0.262) TCGA-CM-5868-01 X 76937849 76937849 T A ATRX Nonsense_Mutation p.K967* 0.14 TCGA-CM-6161-01 10 104179892 104179892 T C FBXL15 5'UTR 0.26 TCGA-CM-6161-01 10 134021519 134021519 C T STK32C Missense_Mutation p.G486S 0.33 tolerated_low_confidence(0.71) benign(0.009) TCGA-CM-6161-01 10 23482812 23482812 C A PTF1A Missense_Mutation p.P322T 0.28 deleterious_low_confidence(0) unknown(0) TCGA-CM-6161-01 10 23731287 23731287 A T OTUD1 3'UTR 0.38 TCGA-CM-6161-01 10 46246971 46246971 G C FAM21C Missense_Mutation p.E325Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6161-01 10 73537990 73537990 C T C10orf54 5'Flank 0.39 TCGA-CM-6161-01 10 81373758 81373758 C T SFTPA1 Silent p.Y227Y 0.32 TCGA-CM-6161-01 10 99081460 99081460 T A FRAT1 3'UTR 0.33 TCGA-CM-6161-01 11 1020245 1020245 G A MUC6 Missense_Mutation p.T1218M 0.26 unknown(0) TCGA-CM-6161-01 11 118778290 118778290 C T BCL9L Missense_Mutation p.R145Q 0.30 benign(0.022) TCGA-CM-6161-01 11 533878 533878 C T HRAS Missense_Mutation p.G60S 0.25 deleterious(0) probably_damaging(0.998) TCGA-CM-6161-01 11 73685981 73685981 A G UCP2 3'UTR 0.07 TCGA-CM-6161-01 11 94924586 94924586 C T SESN3 Silent p.R108R 0.29 TCGA-CM-6161-01 12 130923033 130923033 G A RIMBP2 Silent p.T494T 0.20 TCGA-CM-6161-01 12 52078063 52078064 - T SCN8A Frame_Shift_Ins p.L129Ffs*7 0.18 TCGA-CM-6161-01 12 57865438 57865438 A - GLI1 Frame_Shift_Del p.N973Ifs*3 0.29 TCGA-CM-6161-01 12 75784638 75784638 G C GLIPR1L2 5'Flank 0.38 TCGA-CM-6161-01 13 112723888 112723888 C T SOX1 3'UTR 0.29 TCGA-CM-6161-01 13 35806744 35806744 C T NBEA Silent p.L1922L 0.17 TCGA-CM-6161-01 13 73636761 73636761 A T KLF5 Missense_Mutation p.N342Y 0.26 tolerated(0.05) probably_damaging(0.932) TCGA-CM-6161-01 14 105409550 105409550 G T AHNAK2 Missense_Mutation p.L4080M 0.30 possibly_damaging(0.85) TCGA-CM-6161-01 14 20404721 20404721 G A OR4K1 Nonsense_Mutation p.W299* 0.13 TCGA-CM-6161-01 14 73720577 73720577 G T PAPLN Missense_Mutation p.A377S 0.12 tolerated(0.12) benign(0.121) TCGA-CM-6161-01 14 89034471 89034471 G A ZC3H14 Silent p.G56G 0.26 TCGA-CM-6161-01 14 89628629 89628629 A G FOXN3 3'UTR 0.19 TCGA-CM-6161-01 15 65918152 65918152 C A SLC24A1 Missense_Mutation p.D578E 0.23 probably_damaging(0.918) TCGA-CM-6161-01 15 81585358 81585358 A G IL16 Missense_Mutation p.T628A 0.25 tolerated(0.17) benign(0.003) TCGA-CM-6161-01 15 91419726 91419726 G A FURIN Missense_Mutation p.R104Q 0.27 deleterious(0) probably_damaging(0.993) TCGA-CM-6161-01 16 1894929 1894929 G A MEIOB Nonsense_Mutation p.R272* 0.30 TCGA-CM-6161-01 16 28468210 28468210 G A NPIPB7 Silent p.S260S 0.37 TCGA-CM-6161-01 16 354323 354323 C T AXIN1 Missense_Mutation p.R412Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-CM-6161-01 16 61687340 61687341 - T CDH8 3'UTR 0.16 TCGA-CM-6161-01 16 72828476 72828476 C T ZFHX3 Missense_Mutation p.R2702Q 0.41 unknown(0) TCGA-CM-6161-01 16 81173243 81173243 G A PKD1L2 5'Flank 0.34 TCGA-CM-6161-01 16 81410910 81410910 A T GAN Missense_Mutation p.Y530F 0.35 tolerated(0.23) possibly_damaging(0.815) TCGA-CM-6161-01 16 83251091 83251091 G A CDH13 Missense_Mutation p.A256T 0.28 deleterious(0.03) benign(0.356) TCGA-CM-6161-01 16 88500575 88500575 G A ZNF469 Missense_Mutation p.V2205I 0.39 benign(0) TCGA-CM-6161-01 16 90162492 90162492 C T TUBB8P7 RNA 0.32 TCGA-CM-6161-01 17 37371455 37371455 G A STAC2 Silent p.Y205Y 0.33 TCGA-CM-6161-01 17 48678099 48678099 C T CACNA1G Missense_Mutation p.R1235W 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-CM-6161-01 17 59760994 59760994 T C BRIP1 Missense_Mutation p.D1138G 0.31 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CM-6161-01 17 80915317 80915317 C T B3GNTL1 Missense_Mutation p.R260H 0.37 tolerated(1) benign(0.002) TCGA-CM-6161-01 18 22805058 22805058 C T ZNF521 Missense_Mutation p.E942K 0.07 tolerated(0.14) probably_damaging(0.994) TCGA-CM-6161-01 19 11312772 11312772 C T DOCK6 Silent p.P1827P 0.25 TCGA-CM-6161-01 19 16268505 16268505 A G HSH2D 3'Flank 0.08 TCGA-CM-6161-01 19 18562408 18562408 G T ELL Missense_Mutation p.A307D 0.31 tolerated(0.26) benign(0.197) TCGA-CM-6161-01 19 43766250 43766250 G A PSG9 Silent p.N157N 0.23 TCGA-CM-6161-01 19 43858539 43858539 C T CD177 Missense_Mutation p.P125L 0.32 deleterious(0.05) possibly_damaging(0.816) TCGA-CM-6161-01 19 44791637 44791637 C T ZNF235 Missense_Mutation p.G651R 0.50 tolerated(0.05) probably_damaging(1) TCGA-CM-6161-01 19 49814234 49814234 G T SLC6A16 Missense_Mutation p.S124Y 0.12 tolerated(0.43) possibly_damaging(0.707) TCGA-CM-6161-01 19 52825581 52825581 C T ZNF480 Nonsense_Mutation p.R360* 0.47 TCGA-CM-6161-01 1 10357086 10357086 G A KIF1B Missense_Mutation p.E619K 0.37 deleterious(0) probably_damaging(0.986) TCGA-CM-6161-01 1 110168842 110168842 G A AMPD2 Silent p.S192S 0.40 TCGA-CM-6161-01 1 154516937 154516937 C T TDRD10 Silent p.R247R 0.36 TCGA-CM-6161-01 1 215960140 215960140 A C USH2A Missense_Mutation p.F3420C 0.32 benign(0.401) TCGA-CM-6161-01 1 229568815 229568815 G A ACTA1 Silent p.S16S 0.11 TCGA-CM-6161-01 1 247902490 247902490 G T OR14K1 Missense_Mutation p.A192S 0.05 tolerated(0.31) benign(0.04) TCGA-CM-6161-01 1 34329777 34329777 A G HMGB4 5'UTR 0.21 TCGA-CM-6161-01 1 34684302 34684302 C T C1orf94 Silent p.S579S 0.34 TCGA-CM-6161-01 1 79093944 79093944 G A IFI44L Missense_Mutation p.R115H 0.35 tolerated(0.53) benign(0.302) TCGA-CM-6161-01 20 19664964 19664964 G T SLC24A3 Missense_Mutation p.R349L 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-CM-6161-01 20 31765987 31765987 G A BPIFA2 Missense_Mutation p.V200M 0.22 tolerated(0.16) benign(0.253) TCGA-CM-6161-01 20 43034793 43034793 C T HNF4A Missense_Mutation p.H71Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-CM-6161-01 20 61511242 61511242 G A DIDO1 Silent p.G2022G 0.35 TCGA-CM-6161-01 20 62331682 62331691 AAGAACCCCA - ARFRP1 3'UTR 0.42 TCGA-CM-6161-01 21 19169169 19169169 G T C21orf91 Missense_Mutation p.L132I 0.70 tolerated(0.05) probably_damaging(0.999) TCGA-CM-6161-01 21 34632972 34632972 C G IFNAR2 Silent p.T260T 0.26 TCGA-CM-6161-01 21 43411967 43411967 G A ZBTB21 Silent p.N746N 0.39 TCGA-CM-6161-01 2 105915145 105915145 C T TGFBRAP1 Missense_Mutation p.A236T 0.33 tolerated(0.22) benign(0.106) TCGA-CM-6161-01 2 15358947 15358947 C T NBAS Missense_Mutation p.V2128M 0.23 tolerated(0.1) benign(0.066) TCGA-CM-6161-01 2 173340399 173340399 A T ITGA6 Missense_Mutation p.T419S 0.29 tolerated(0.1) benign(0.106) TCGA-CM-6161-01 2 179343257 179343257 G T FKBP7 5'UTR 0.12 TCGA-CM-6161-01 2 179590330 179590330 G A TTN Silent p.A6867A 0.59 TCGA-CM-6161-01 2 179650418 179650418 G A TTN Missense_Mutation p.R808C 0.23 TCGA-CM-6161-01 2 191873753 191873753 C T STAT1 Missense_Mutation p.R70H 0.06 deleterious(0.02) probably_damaging(0.962) TCGA-CM-6161-01 2 217234891 217234891 C T MARCH4 Missense_Mutation p.M31I 0.13 deleterious_low_confidence(0.01) benign(0.38) TCGA-CM-6161-01 2 220104346 220104346 C T GLB1L Missense_Mutation p.R280Q 0.25 tolerated(0.06) benign(0.017) TCGA-CM-6161-01 2 220337811 220337811 G A SPEG Silent p.L1380L 0.21 TCGA-CM-6161-01 2 220423104 220423104 G A OBSL1 Missense_Mutation p.R1102C 0.27 tolerated(0.2) benign(0.077) TCGA-CM-6161-01 2 242435923 242435923 G A STK25 Silent p.G377G 0.26 TCGA-CM-6161-01 2 28843184 28843184 G A PLB1 Missense_Mutation p.R1123K 0.20 tolerated(0.14) possibly_damaging(0.629) TCGA-CM-6161-01 2 48808144 48808144 G T STON1-GTF2A1L Silent p.L124L 0.17 TCGA-CM-6161-01 2 54149673 54149673 T A PSME4 Missense_Mutation p.N676I 0.23 deleterious(0) benign(0.14) TCGA-CM-6161-01 2 74885009 74885009 C T SEMA4F Silent p.L129L 0.27 TCGA-CM-6161-01 2 98351754 98351754 C T ZAP70 Missense_Mutation p.T375M 0.28 deleterious(0.01) benign(0.359) TCGA-CM-6161-01 3 145788459 145788459 G T PLOD2 3'UTR 0.11 TCGA-CM-6161-01 3 183756953 183756953 C T HTR3D 3'UTR 0.25 TCGA-CM-6161-01 3 186917955 186917955 G A RTP1 3'UTR 0.26 TCGA-CM-6161-01 3 195512307 195512307 A T MUC4 Silent p.P2048P 0.10 TCGA-CM-6161-01 3 46490414 46490414 G A LTF Silent p.S384S 0.23 TCGA-CM-6161-01 3 47614275 47614275 G A CSPG5 Missense_Mutation p.S428L 0.24 deleterious(0) possibly_damaging(0.562) TCGA-CM-6161-01 3 51864584 51864584 C T IQCF3 Missense_Mutation p.R78W 0.08 deleterious(0.03) benign(0.136) TCGA-CM-6161-01 3 54798289 54798289 G T CACNA2D3 Missense_Mutation p.V431F 0.06 deleterious(0) probably_damaging(0.996) TCGA-CM-6161-01 3 97619304 97619304 T C CRYBG3 Missense_Mutation p.L712P 0.21 deleterious(0) probably_damaging(0.987) TCGA-CM-6161-01 4 122853628 122853628 G A TRPC3 Missense_Mutation p.P262L 0.32 deleterious(0) probably_damaging(1) TCGA-CM-6161-01 4 2911107 2911107 C T ADD1 Intron 0.40 TCGA-CM-6161-01 4 42127677 42127677 C T BEND4 Missense_Mutation p.V357I 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-CM-6161-01 4 515637 515637 G A PIGG Silent p.A507A 0.34 TCGA-CM-6161-01 4 68925085 68925085 A G TMPRSS11F Silent p.L373L 0.28 TCGA-CM-6161-01 4 82125878 82125878 C T PRKG2 Silent p.K108K 0.33 TCGA-CM-6161-01 5 140554004 140554004 C T PCDHB7 Missense_Mutation p.R530C 0.23 deleterious_low_confidence(0.02) benign(0.201) TCGA-CM-6161-01 5 150933923 150933923 C T FAT2 Silent p.T1315T 0.21 TCGA-CM-6161-01 5 156074525 156074525 C A SGCD Missense_Mutation p.A185E 0.44 deleterious(0) probably_damaging(0.962) TCGA-CM-6161-01 5 156770536 156770536 G A FNDC9 Silent p.I3I 0.15 TCGA-CM-6161-01 5 75428098 75428098 G A SV2C Missense_Mutation p.V175M 0.25 deleterious(0) probably_damaging(0.998) TCGA-CM-6161-01 6 106968206 106968206 G C AIM1 Missense_Mutation p.Q633H 0.33 tolerated(0.05) benign(0.024) TCGA-CM-6161-01 6 135606492 135606492 G C AHI1 3'UTR 0.40 TCGA-CM-6161-01 6 155578235 155578235 G C TIAM2 Missense_Mutation p.E1696Q 0.40 tolerated_low_confidence(0.09) benign(0.024) TCGA-CM-6161-01 6 159457676 159457676 A G TAGAP Missense_Mutation p.F460S 0.09 tolerated(0.43) benign(0.002) TCGA-CM-6161-01 6 348918 348918 G A DUSP22 Intron 0.21 TCGA-CM-6161-01 6 53989519 53989519 C T MLIP Silent p.T156T 0.48 TCGA-CM-6161-01 6 70926744 70926744 G A COL9A1 Silent p.D874D 0.25 TCGA-CM-6161-01 7 100693791 100693791 A G MUC17 Missense_Mutation p.D4250G 0.27 unknown(0) TCGA-CM-6161-01 7 102895317 102895317 G A DPY19L2P2 RNA 0.27 TCGA-CM-6161-01 7 1097145 1097145 G A GPR146 5'UTR 0.47 TCGA-CM-6161-01 7 112096104 112096104 A T IFRD1 Nonsense_Mutation p.K83* 0.21 TCGA-CM-6161-01 7 112724295 112724295 C T GPR85 Missense_Mutation p.G161D 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-CM-6161-01 7 11521536 11521536 C A THSD7A Silent p.P632P 0.26 TCGA-CM-6161-01 7 115889998 115889998 A T TES Intron 0.38 TCGA-CM-6161-01 7 142583297 142583297 G A TRPV6 5'UTR 0.23 TCGA-CM-6161-01 7 1520513 1520513 T A INTS1 Missense_Mutation p.T1303S 0.28 tolerated(0.19) benign(0.082) TCGA-CM-6161-01 7 1520514 1520514 C T INTS1 Silent p.Q1302Q 0.28 TCGA-CM-6161-01 7 29924141 29924141 C T WIPF3 Missense_Mutation p.A344V 0.25 tolerated_low_confidence(0.05) unknown(0) TCGA-CM-6161-01 7 43447190 43447190 A G HECW1 Missense_Mutation p.M221V 0.45 deleterious(0) probably_damaging(0.996) TCGA-CM-6161-01 7 48318849 48318849 C T ABCA13 Silent p.N2686N 0.23 TCGA-CM-6161-01 7 74564661 74564661 T C GTF2IRD2B Missense_Mutation p.L803P 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-CM-6161-01 7 95657500 95657500 C T DYNC1I1 Missense_Mutation p.S345L 0.14 deleterious(0) benign(0.158) TCGA-CM-6161-01 7 99971337 99971337 C A PILRA Missense_Mutation p.Q20K 0.27 tolerated(0.08) benign(0.201) TCGA-CM-6161-01 8 145637809 145637809 G A SLC39A4 3'UTR 0.27 TCGA-CM-6161-01 8 37697674 37697674 G A GPR124 Silent p.T849T 0.16 TCGA-CM-6161-01 8 77763429 77763429 G A ZFHX4 Silent p.A1424A 0.22 TCGA-CM-6161-01 8 81555345 81555345 G A ZNF704 Missense_Mutation p.P351L 0.28 tolerated(0.06) benign(0.001) TCGA-CM-6161-01 8 86127407 86127407 C T C8orf59 Intron 0.22 TCGA-CM-6161-01 9 130427524 130427524 A G STXBP1 Splice_Site p.X193_splice 0.09 TCGA-CM-6161-01 9 140245851 140245851 G T EXD3 Missense_Mutation p.Q435K 0.12 tolerated(0.36) benign(0.076) TCGA-CM-6161-01 9 18777136 18777136 G A ADAMTSL1 Missense_Mutation p.R970Q 0.33 tolerated(0.85) benign(0.001) TCGA-CM-6161-01 9 84205869 84205869 C T TLE1 Silent p.A560A 0.29 TCGA-CM-6161-01 9 84530627 84530627 T A SPATA31D5P RNA 0.37 TCGA-CM-6161-01 X 118925550 118925550 G A RPL39 5'UTR 0.34 TCGA-CM-6161-01 X 16669166 16669166 A T S100G Missense_Mutation p.I13F 0.25 deleterious(0) benign(0.207) TCGA-CM-6161-01 X 70345337 70345337 C A MED12 Missense_Mutation p.A788E 0.27 benign(0.131) TCGA-CM-6163-01 10 135094874 135094874 C T TUBGCP2 Missense_Mutation p.D854N 0.24 tolerated(0.06) possibly_damaging(0.839) TCGA-CM-6163-01 10 26355921 26355921 C T MYO3A Missense_Mutation p.T324M 0.30 deleterious(0) possibly_damaging(0.734) TCGA-CM-6163-01 10 27499754 27499754 C G ACBD5 Missense_Mutation p.R398T 0.08 deleterious(0) probably_damaging(0.996) TCGA-CM-6163-01 10 3146039 3146039 G T PFKP Missense_Mutation p.D175Y 0.31 deleterious(0) probably_damaging(1) TCGA-CM-6163-01 10 55626401 55626401 C T PCDH15 Splice_Site p.X1239_splice 0.32 TCGA-CM-6163-01 10 89268143 89268143 G T MINPP1 Missense_Mutation p.D230Y 0.21 deleterious(0) probably_damaging(0.976) TCGA-CM-6163-01 10 96824643 96824643 G A CYP2C8 Nonsense_Mutation p.R186* 0.21 TCGA-CM-6163-01 11 130319402 130319402 G A ADAMTS15 Silent p.S178S 0.47 TCGA-CM-6163-01 11 65123463 65123463 G A TIGD3 Missense_Mutation p.G62S 0.34 deleterious(0.03) possibly_damaging(0.806) TCGA-CM-6163-01 11 66357876 66357876 A G CCDC87 3'UTR 0.08 TCGA-CM-6163-01 11 92573870 92573870 G A FAT3 Missense_Mutation p.R3504Q 0.49 possibly_damaging(0.838) TCGA-CM-6163-01 12 107398958 107398958 A G CRY1 Silent p.A112A 0.20 TCGA-CM-6163-01 12 108013765 108013765 G A BTBD11 Missense_Mutation p.V819I 0.18 deleterious(0.05) possibly_damaging(0.79) TCGA-CM-6163-01 12 122218938 122218938 G C TMEM120B 3'UTR 0.19 TCGA-CM-6163-01 12 129028603 129028603 C T TMEM132C Missense_Mutation p.T359M 0.22 deleterious(0.02) probably_damaging(0.909) TCGA-CM-6163-01 12 12974636 12974636 G T DDX47 Missense_Mutation p.A140S 0.32 tolerated(0.29) benign(0.027) TCGA-CM-6163-01 12 132416646 132416646 G A PUS1 Intron 0.27 TCGA-CM-6163-01 12 52635261 52635261 G A KRT7 Silent p.L233L 0.24 TCGA-CM-6163-01 12 52844244 52844244 C T KRT6B Missense_Mutation p.R234H 0.25 deleterious(0.05) benign(0.127) TCGA-CM-6163-01 12 54379055 54379055 T A HOXC10 Silent p.P4P 0.22 TCGA-CM-6163-01 12 56565098 56565098 G T SMARCC2 Missense_Mutation p.S737R 0.24 deleterious(0.02) benign(0.307) TCGA-CM-6163-01 12 86374175 86374175 C T MGAT4C Missense_Mutation p.R110Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-CM-6163-01 13 110804734 110804734 G A COL4A1 Silent p.Y1625Y 0.43 TCGA-CM-6163-01 13 35615243 35615243 A C NBEA Missense_Mutation p.E156D 0.07 tolerated(0.15) benign(0.39) TCGA-CM-6163-01 13 42875416 42875416 G A AKAP11 Missense_Mutation p.G845D 0.29 tolerated(0.59) benign(0.002) TCGA-CM-6163-01 13 58208457 58208457 G A PCDH17 Missense_Mutation p.A593T 0.11 tolerated(0.05) probably_damaging(0.986) TCGA-CM-6163-01 13 67800496 67800496 G A PCDH9 Missense_Mutation p.P693S 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-CM-6163-01 13 73347874 73347874 C T DIS3 Missense_Mutation p.R396Q 0.39 tolerated(1) benign(0) TCGA-CM-6163-01 13 73636030 73636030 C G KLF5 Missense_Mutation p.P98R 0.21 deleterious(0.05) benign(0.261) TCGA-CM-6163-01 14 100134578 100134578 G A HHIPL1 Silent p.S556S 0.08 TCGA-CM-6163-01 14 20774100 20774100 C T TTC5 5'UTR 0.11 TCGA-CM-6163-01 14 66188638 66188638 G A FUT8 Nonsense_Mutation p.W327* 0.14 TCGA-CM-6163-01 14 76549620 76549620 C T IFT43 Silent p.H170H 0.33 TCGA-CM-6163-01 15 56726335 56726335 C T MNS1 Splice_Site p.X423_splice 0.47 TCGA-CM-6163-01 16 15785007 15785007 G A NDE1 Missense_Mutation p.R177Q 0.26 tolerated(0.06) benign(0.273) TCGA-CM-6163-01 16 19745076 19745076 G A IQCK Silent p.P101P 0.30 TCGA-CM-6163-01 16 53859806 53859806 C T FTO Nonsense_Mutation p.R52* 0.28 TCGA-CM-6163-01 16 570528 570528 G A RAB11FIP3 Missense_Mutation p.A696T 0.23 deleterious(0) possibly_damaging(0.777) TCGA-CM-6163-01 16 67305113 67305113 G C SLC9A5 Nonstop_Mutation p.*897Yext*22 0.24 TCGA-CM-6163-01 16 83941852 83941852 G A MLYCD Missense_Mutation p.V255M 0.27 deleterious(0) probably_damaging(0.973) TCGA-CM-6163-01 17 10299904 10299904 G A MYH8 Silent p.L1498L 0.22 TCGA-CM-6163-01 17 32964792 32964792 G A TMEM132E Silent p.P832P 0.25 TCGA-CM-6163-01 17 33884687 33884687 C T SLFN14 Missense_Mutation p.R132Q 0.29 tolerated(1) benign(0) TCGA-CM-6163-01 17 39394489 39394489 G C KRTAP9-8 Silent p.V62V 0.09 TCGA-CM-6163-01 17 39728200 39728200 G A KRT9 Silent p.G15G 0.20 TCGA-CM-6163-01 17 59001767 59001767 G C BCAS3 Splice_Site p.X332_splice 0.32 TCGA-CM-6163-01 17 72522159 72522159 G A CD300LB Missense_Mutation p.T70M 0.29 deleterious(0.01) benign(0.106) TCGA-CM-6163-01 17 72832465 72832465 G A TMEM104 Missense_Mutation p.R377H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CM-6163-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.30 tolerated(0.13) possibly_damaging(0.631) TCGA-CM-6163-01 17 78078638 78078638 C T GAA Missense_Mutation p.P85S 0.37 tolerated(0.16) benign(0.034) TCGA-CM-6163-01 17 7950268 7950268 G A ALOX15B Missense_Mutation p.R444K 0.08 tolerated(0.36) benign(0.042) TCGA-CM-6163-01 18 43310277 43310277 G C SLC14A1 Missense_Mutation p.E54Q 0.18 tolerated(0.17) benign(0.092) TCGA-CM-6163-01 19 21240856 21240856 T C ZNF430 3'UTR 0.08 TCGA-CM-6163-01 19 30936168 30936168 G A ZNF536 Missense_Mutation p.V567M 0.35 deleterious(0.05) benign(0.041) TCGA-CM-6163-01 19 36244070 36244070 C T LIN37 Silent p.R120R 0.30 TCGA-CM-6163-01 19 40354026 40354026 G A FCGBP 3'UTR 0.20 TCGA-CM-6163-01 19 42797278 42797278 C T CIC Nonsense_Mutation p.R1214* 0.36 TCGA-CM-6163-01 19 43519445 43519445 C T PSG11 Missense_Mutation p.A263T 0.36 tolerated(0.41) benign(0.021) TCGA-CM-6163-01 19 45684078 45684078 G A BLOC1S3 3'UTR 0.38 TCGA-CM-6163-01 19 52570125 52570125 C T ZNF841 Missense_Mutation p.R337K 0.08 tolerated(0.14) possibly_damaging(0.905) TCGA-CM-6163-01 1 152187851 152187851 C A HRNR Missense_Mutation p.G2085V 0.38 unknown(0) TCGA-CM-6163-01 1 152188081 152188081 A T HRNR Silent p.S2008S 0.17 TCGA-CM-6163-01 1 153614880 153614880 A G CHTOP Silent p.L126L 0.30 TCGA-CM-6163-01 1 154557744 154557744 G A ADAR Missense_Mutation p.A1131V 0.13 deleterious(0.01) possibly_damaging(0.877) TCGA-CM-6163-01 1 161519777 161519777 T C FCGR3A 5'UTR 0.16 TCGA-CM-6163-01 1 161519788 161519788 T C FCGR3A 5'UTR 0.19 TCGA-CM-6163-01 1 168014272 168014272 G C DCAF6 Missense_Mutation p.D689H 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.712) TCGA-CM-6163-01 1 208383649 208383649 C A PLXNA2 Silent p.G449G 0.05 TCGA-CM-6163-01 1 228596338 228596338 C T TRIM17 Missense_Mutation p.R333Q 0.29 deleterious(0) possibly_damaging(0.765) TCGA-CM-6163-01 1 248367097 248367097 C A OR2M3 Missense_Mutation p.S243Y 0.42 deleterious(0) probably_damaging(0.991) TCGA-CM-6163-01 1 248651956 248651956 A T OR2T5 Nonsense_Mutation p.R23* 0.05 TCGA-CM-6163-01 1 38018291 38018291 A C SNIP1 Missense_Mutation p.S94R 0.47 tolerated(0.42) benign(0.235) TCGA-CM-6163-01 1 53370352 53370352 C T ECHDC2 Missense_Mutation p.R223Q 0.21 tolerated(0.09) benign(0.033) TCGA-CM-6163-01 20 30662501 30662501 C T HCK Silent p.R135R 0.22 TCGA-CM-6163-01 20 33867864 33867864 C A EIF6 Missense_Mutation p.A143S 0.36 tolerated(0.05) possibly_damaging(0.541) TCGA-CM-6163-01 20 54824399 54824399 C A MC3R Missense_Mutation p.A167D 0.25 deleterious(0.02) benign(0.392) TCGA-CM-6163-01 20 62038497 62038497 C T KCNQ2 Missense_Mutation p.A707T 0.41 tolerated(0.5) benign(0.001) TCGA-CM-6163-01 21 27328053 27328053 T C APP Missense_Mutation p.N492S 0.49 tolerated(0.39) benign(0.02) TCGA-CM-6163-01 22 41545069 41545069 C T EP300 Nonsense_Mutation p.Q757* 0.33 TCGA-CM-6163-01 2 121748117 121748117 C T GLI2 Missense_Mutation p.R1543C 0.20 deleterious(0.04) benign(0.004) TCGA-CM-6163-01 2 128409856 128409856 C A GPR17 3'UTR 0.25 TCGA-CM-6163-01 2 133542616 133542616 C A NCKAP5 Nonsense_Mutation p.E590* 0.15 TCGA-CM-6163-01 2 167262413 167262413 C T SCN7A Missense_Mutation p.D1576N 0.27 deleterious(0) probably_damaging(1) TCGA-CM-6163-01 2 179400998 179400998 T C TTN Silent p.P33492P 0.27 TCGA-CM-6163-01 2 210678358 210678358 C T UNC80 Silent p.D331D 0.34 TCGA-CM-6163-01 2 210810587 210810587 C T UNC80 Silent p.N2336N 0.26 TCGA-CM-6163-01 2 212989487 212989487 G A ERBB4 Missense_Mutation p.S75F 0.42 deleterious(0.02) probably_damaging(0.981) TCGA-CM-6163-01 2 223066812 223066812 G A PAX3 Missense_Mutation p.T424M 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-CM-6163-01 2 233620972 233620972 C T GIGYF2 Nonsense_Mutation p.R103* 0.36 TCGA-CM-6163-01 2 237032843 237032843 C T AGAP1 3'UTR 0.35 TCGA-CM-6163-01 2 239059488 239059488 G A KLHL30 Missense_Mutation p.A507T 0.32 tolerated(0.14) possibly_damaging(0.896) TCGA-CM-6163-01 2 27521526 27521526 T C TRIM54 Missense_Mutation p.L87P 0.24 deleterious(0) probably_damaging(0.998) TCGA-CM-6163-01 2 71896747 71896747 C T DYSF Silent p.G1885G 0.24 TCGA-CM-6163-01 2 73996399 73996399 T G DUSP11 Missense_Mutation p.I210L 0.48 deleterious(0.01) possibly_damaging(0.891) TCGA-CM-6163-01 2 74643005 74643005 G T C2orf81 Missense_Mutation p.T103N 0.35 deleterious(0.01) probably_damaging(0.921) TCGA-CM-6163-01 2 90139094 90139094 C A IGKV1D-16 5'UTR 0.17 TCGA-CM-6163-01 3 113300225 113300225 C T SIDT1 Silent p.L227L 0.35 TCGA-CM-6163-01 3 126208179 126208179 C T UROC1 Missense_Mutation p.G610S 0.51 deleterious(0) probably_damaging(0.998) TCGA-CM-6163-01 3 161221592 161221592 C G OTOL1 Missense_Mutation p.I432M 0.08 deleterious(0.02) possibly_damaging(0.609) TCGA-CM-6163-01 3 173525522 173525522 C A NLGN1 Silent p.G182G 0.19 TCGA-CM-6163-01 3 47618681 47618681 C T CSPG5 Missense_Mutation p.E279K 0.07 deleterious(0.01) possibly_damaging(0.524) TCGA-CM-6163-01 3 65341993 65341993 G T MAGI1 3'Flank 0.29 TCGA-CM-6163-01 4 3319127 3319127 C T RGS12 Silent p.A410A 0.49 TCGA-CM-6163-01 4 870345 870345 C T GAK Missense_Mutation p.R676Q 0.48 tolerated(0.25) benign(0.165) TCGA-CM-6163-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.47 TCGA-CM-6163-01 5 1221332 1221332 C T SLC6A19 Silent p.R535R 0.32 TCGA-CM-6163-01 5 13810293 13810293 G A DNAH5 Missense_Mutation p.A2495V 0.47 possibly_damaging(0.499) TCGA-CM-6163-01 5 139907493 139907493 C T ANKHD1 Missense_Mutation p.S1708L 0.04 probably_damaging(0.996) TCGA-CM-6163-01 5 140530251 140530251 T C PCDHB6 Missense_Mutation p.L138P 0.19 tolerated(0.07) benign(0.005) TCGA-CM-6163-01 5 156378689 156378689 G A TIMD4 Silent p.V171V 0.29 TCGA-CM-6163-01 5 172745014 172745014 G T STC2 Missense_Mutation p.P249T 0.21 deleterious(0.04) benign(0.031) TCGA-CM-6163-01 6 10902972 10902972 G A SYCP2L Missense_Mutation p.V177I 0.07 tolerated(0.5) benign(0.032) TCGA-CM-6163-01 6 112476107 112476107 C T LAMA4 Missense_Mutation p.E668K 0.34 tolerated(0.63) benign(0.034) TCGA-CM-6163-01 6 13604719 13604719 C T SIRT5 Intron 0.07 TCGA-CM-6163-01 6 13978905 13978905 T C RNF182 3'UTR 0.36 TCGA-CM-6163-01 6 163510398 163510398 C T PACRG Missense_Mutation p.R191C 0.33 deleterious(0) probably_damaging(1) TCGA-CM-6163-01 6 26045942 26045942 G A HIST1H3C Missense_Mutation p.V102M 0.22 deleterious_low_confidence(0) possibly_damaging(0.622) TCGA-CM-6163-01 6 26197212 26197212 C A HIST1H3D Silent p.A89A 0.38 TCGA-CM-6163-01 6 30166943 30166943 A G TRIM26 5'UTR 0.10 TCGA-CM-6163-01 6 3850153 3850153 C T FAM50B Silent p.A36A 0.16 TCGA-CM-6163-01 6 41658577 41658577 C T TFEB Missense_Mutation p.E98K 0.16 tolerated(0.12) possibly_damaging(0.736) TCGA-CM-6163-01 6 42975948 42975948 C T PPP2R5D Silent p.Y289Y 0.38 TCGA-CM-6163-01 7 131895902 131895902 C A PLXNA4 Missense_Mutation p.D700Y 0.36 tolerated(1) possibly_damaging(0.722) TCGA-CM-6163-01 7 131895903 131895903 C A PLXNA4 Splice_Site p.X700_splice 0.36 TCGA-CM-6163-01 7 149515801 149515801 G A SSPO RNA 0.24 TCGA-CM-6163-01 7 151082183 151082183 C T WDR86 Missense_Mutation p.A285T 0.33 tolerated(0.2) benign(0.295) TCGA-CM-6163-01 7 154561191 154561191 C T DPP6 Silent p.A316A 0.30 TCGA-CM-6163-01 8 31024558 31024558 A G WRN Missense_Mutation p.I1335V 0.11 tolerated(0.1) possibly_damaging(0.751) TCGA-CM-6163-01 8 75929171 75929171 C A CRISPLD1 Nonsense_Mutation p.C308* 0.08 TCGA-CM-6163-01 9 127572207 127572207 G A OLFML2A Missense_Mutation p.R492Q 0.09 deleterious(0) possibly_damaging(0.553) TCGA-CM-6163-01 9 137620618 137620618 G A COL5A1 Missense_Mutation p.V297M 0.50 probably_damaging(0.968) TCGA-CM-6163-01 X 113965746 113965746 G T HTR2C Missense_Mutation p.V27L 0.04 tolerated_low_confidence(0.39) benign(0.002) TCGA-CM-6163-01 X 140271019 140271019 C T LDOC1 Missense_Mutation p.R63Q 0.48 tolerated(0.09) probably_damaging(0.988) TCGA-CM-6163-01 X 140785773 140785773 G A SPANXD Missense_Mutation p.S48L 0.33 tolerated_low_confidence(0.27) probably_damaging(0.992) TCGA-CM-6163-01 X 153761271 153761271 C T G6PD Missense_Mutation p.D343N 0.71 tolerated(0.23) benign(0) TCGA-CM-6163-01 X 32509486 32509486 G T DMD Missense_Mutation p.Q844K 0.60 benign(0.179) TCGA-CM-6163-01 X 48934128 48934128 G A WDR45 Nonsense_Mutation p.R134* 0.75 TCGA-CM-6163-01 X 49074942 49074942 C T CACNA1F Missense_Mutation p.R978Q 0.29 deleterious(0) possibly_damaging(0.476) TCGA-CM-6163-01 X 63576202 63576202 A G MTMR8 Missense_Mutation p.I55T 0.68 deleterious(0) probably_damaging(1) TCGA-CM-6163-01 X 66766110 66766110 G A AR Silent p.P374P 0.45 TCGA-CM-6163-01 X 69960606 69960606 C A TEX11 Missense_Mutation p.W278L 0.40 tolerated(0.1) probably_damaging(0.953) TCGA-CM-6163-01 X 77275832 77275832 T A ATP7A Missense_Mutation p.H906Q 0.07 deleterious(0) possibly_damaging(0.609) TCGA-CM-6163-01 X 77912649 77912649 C T ZCCHC5 Silent p.Q423Q 0.64 TCGA-CM-6164-01 10 126172716 126172716 G A LHPP Missense_Mutation p.R45H 0.12 tolerated(0.08) benign(0.001) TCGA-CM-6164-01 10 48389101 48389101 C T RBP3 Missense_Mutation p.V593M 0.24 deleterious(0.03) possibly_damaging(0.874) TCGA-CM-6164-01 11 1031207 1031207 A C MUC6 Missense_Mutation p.F179C 0.39 unknown(0) TCGA-CM-6164-01 11 47591339 47591339 G A PTPMT1 Missense_Mutation p.V115I 0.10 deleterious(0) probably_damaging(0.999) TCGA-CM-6164-01 11 6231344 6231344 A G C11orf42 Missense_Mutation p.T113A 0.24 tolerated(0.18) benign(0.133) TCGA-CM-6164-01 11 6643864 6643864 C A DCHS1 Missense_Mutation p.A3015S 0.31 tolerated(0.32) benign(0.003) TCGA-CM-6164-01 11 77320425 77320425 G C AQP11 3'UTR 0.09 TCGA-CM-6164-01 11 78380493 78380493 G A TENM4 Silent p.R2299R 0.34 TCGA-CM-6164-01 11 9304982 9304982 T A TMEM41B Nonsense_Mutation p.K289* 0.29 TCGA-CM-6164-01 12 105321858 105321858 T C SLC41A2 Missense_Mutation p.K150E 0.19 tolerated(0.38) benign(0.008) TCGA-CM-6164-01 12 25398218 25398218 G A KRAS Missense_Mutation p.P34L 0.16 deleterious(0) probably_damaging(0.995) TCGA-CM-6164-01 12 56737065 56737065 C A STAT2 3'UTR 0.21 TCGA-CM-6164-01 12 63994157 63994157 C A DPY19L2 Missense_Mutation p.G430C 0.15 tolerated(0.08) benign(0.114) TCGA-CM-6164-01 13 37678437 37678437 G A CSNK1A1L Silent p.A319A 0.27 TCGA-CM-6164-01 13 67801238 67801238 C T PCDH9 Silent p.G445G 0.23 TCGA-CM-6164-01 15 101552265 101552265 C A LRRK1 Missense_Mutation p.A445D 0.14 tolerated(0.24) benign(0.082) TCGA-CM-6164-01 15 29346727 29346727 C T APBA2 Missense_Mutation p.R214C 0.27 deleterious_low_confidence(0.03) benign(0.004) TCGA-CM-6164-01 16 16184382 16184382 G A ABCC1 Missense_Mutation p.A861T 0.17 deleterious(0.01) benign(0.064) TCGA-CM-6164-01 16 21288838 21288838 A G CRYM Missense_Mutation p.Y80H 0.09 deleterious(0) probably_damaging(0.998) TCGA-CM-6164-01 16 29367178 29367178 G A SNX29P2 RNA 0.10 TCGA-CM-6164-01 16 88502965 88502965 C T ZNF469 Silent p.D3001D 0.36 TCGA-CM-6164-01 17 21731435 21731435 G T UBBP4 Missense_Mutation p.E170D 0.14 tolerated(0.11) probably_damaging(0.982) TCGA-CM-6164-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-6164-01 18 77488997 77488997 A G CTDP1 Silent p.R836R 0.13 TCGA-CM-6164-01 19 13616922 13616922 G A CACNA1A Silent p.G39G 0.21 TCGA-CM-6164-01 19 4513206 4513206 C T PLIN4 Missense_Mutation p.G242S 0.12 tolerated(0.06) probably_damaging(0.927) TCGA-CM-6164-01 19 48183987 48183987 G A GLTSCR1 Silent p.L520L 0.09 TCGA-CM-6164-01 19 7523420 7523420 C T ARHGEF18 Missense_Mutation p.S547L 0.34 deleterious(0.01) probably_damaging(1) TCGA-CM-6164-01 19 7807867 7807867 T G CD209 3'UTR 0.34 TCGA-CM-6164-01 1 152192466 152192466 G A HRNR Nonsense_Mutation p.R547* 0.26 TCGA-CM-6164-01 1 152284127 152284127 C A FLG Nonsense_Mutation p.E1079* 0.15 TCGA-CM-6164-01 1 19983375 19983375 C T MINOS1-NBL1 Missense_Mutation p.P100L 0.10 deleterious(0) probably_damaging(0.947) TCGA-CM-6164-01 1 228111949 228111949 C T WNT9A Missense_Mutation p.G169R 0.17 deleterious(0) probably_damaging(1) TCGA-CM-6164-01 1 232942205 232942207 CTC - MAP10 In_Frame_Del p.P480del 0.12 TCGA-CM-6164-01 1 32050622 32050622 T C TINAGL1 Missense_Mutation p.F281S 0.15 deleterious(0) probably_damaging(0.911) TCGA-CM-6164-01 1 33235610 33235610 C T KIAA1522 Missense_Mutation p.A277V 0.36 tolerated(0.15) unknown(0) TCGA-CM-6164-01 1 92697003 92697003 T C C1orf146 Missense_Mutation p.I9T 0.34 tolerated(0.77) unknown(0) TCGA-CM-6164-01 20 2819558 2819558 C T PCED1A Silent p.L125L 0.09 TCGA-CM-6164-01 20 31022289 31022289 C T ASXL1 Nonsense_Mutation p.Q592* 0.30 TCGA-CM-6164-01 20 34487392 34487392 A T PHF20 Missense_Mutation p.K461N 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-CM-6164-01 20 43739113 43739113 C T WFDC5 Missense_Mutation p.D99N 0.13 deleterious(0) probably_damaging(1) TCGA-CM-6164-01 20 57782084 57782084 C T ZNF831 Missense_Mutation p.P1334S 0.22 tolerated(0.41) benign(0.014) TCGA-CM-6164-01 21 34107102 34107102 C A PAXBP1 3'UTR 0.13 TCGA-CM-6164-01 22 18384705 18384705 A G MICAL3 Silent p.P210P 0.08 TCGA-CM-6164-01 2 131840210 131840210 C T FAM168B Missense_Mutation p.V4I 0.08 tolerated_low_confidence(0.12) benign(0.016) TCGA-CM-6164-01 2 133542073 133542073 G T NCKAP5 Missense_Mutation p.Q771K 0.16 tolerated(0.06) benign(0.158) TCGA-CM-6164-01 2 189862081 189862081 G T COL3A1 Missense_Mutation p.G612V 0.36 unknown(0) TCGA-CM-6164-01 2 226447518 226447518 C T NYAP2 Missense_Mutation p.S462L 0.34 tolerated(0.17) benign(0.005) TCGA-CM-6164-01 2 26684574 26684574 G A OTOF Silent p.D1841D 0.32 TCGA-CM-6164-01 2 49295406 49295406 C T FSHR Missense_Mutation p.R59Q 0.35 tolerated(0.25) benign(0.002) TCGA-CM-6164-01 2 54856786 54856786 C T SPTBN1 Missense_Mutation p.R839W 0.39 deleterious(0.02) benign(0.015) TCGA-CM-6164-01 2 97359414 97359414 G A FER1L5 RNA 0.15 TCGA-CM-6164-01 3 100605156 100605156 A T ABI3BP Missense_Mutation p.I165N 0.07 deleterious(0) benign(0.308) TCGA-CM-6164-01 3 112648129 112648129 C T CD200R1 Missense_Mutation p.R143H 0.24 tolerated(0.22) benign(0.001) TCGA-CM-6164-01 3 122414493 122414493 A G PARP14 Silent p.E273E 0.27 TCGA-CM-6164-01 3 142537256 142537256 A - PCOLCE2 Frame_Shift_Del p.I390Tfs*8 0.20 TCGA-CM-6164-01 3 195798987 195798987 A G TFRC Silent p.A157A 0.29 TCGA-CM-6164-01 3 49698153 49698153 C T BSN Missense_Mutation p.R2959C 0.16 unknown(0) TCGA-CM-6164-01 3 58089787 58089788 - G FLNB Frame_Shift_Ins p.H532Tfs*9 0.09 TCGA-CM-6164-01 4 165961792 165961792 A G TRIM60 Missense_Mutation p.I190V 0.17 tolerated(0.62) benign(0.003) TCGA-CM-6164-01 4 170639007 170639007 G A CLCN3 Missense_Mutation p.V811I 0.18 tolerated_low_confidence(0.42) benign(0) TCGA-CM-6164-01 4 186427719 186427719 C T PDLIM3 Silent p.S250S 0.19 TCGA-CM-6164-01 4 2696742 2696742 G A FAM193A Silent p.E763E 0.42 TCGA-CM-6164-01 4 2749630 2749630 C A TNIP2 Nonsense_Mutation p.E107* 0.09 TCGA-CM-6164-01 4 4228306 4228306 G A OTOP1 Silent p.L96L 0.28 TCGA-CM-6164-01 4 47939673 47939673 G A CNGA1 Missense_Mutation p.R349C 0.29 deleterious(0.02) benign(0.399) TCGA-CM-6164-01 4 55564660 55564660 G C KIT Missense_Mutation p.C183S 0.25 tolerated(0.05) benign(0.403) TCGA-CM-6164-01 5 112128191 112128191 C T APC Nonsense_Mutation p.R232* 0.36 TCGA-CM-6164-01 5 140792814 140792814 C T PCDHGA10 Silent p.F24F 0.20 TCGA-CM-6164-01 5 54771165 54771165 A G PPAP2A Intron 0.44 TCGA-CM-6164-01 6 29323755 29323755 T A OR5V1 Missense_Mutation p.Y73F 0.47 tolerated(0.15) possibly_damaging(0.528) TCGA-CM-6164-01 6 54806729 54806729 G A FAM83B Missense_Mutation p.R987H 0.22 tolerated(1) benign(0.001) TCGA-CM-6164-01 6 56417687 56417687 C T DST Silent p.S2678S 0.14 TCGA-CM-6164-01 7 121650934 121650934 G A PTPRZ1 Missense_Mutation p.E612K 0.10 tolerated_low_confidence(0.09) possibly_damaging(0.562) TCGA-CM-6164-01 7 131128265 131128265 T C MKLN1 Missense_Mutation p.M400T 0.31 tolerated(1) benign(0.001) TCGA-CM-6164-01 7 27147768 27147768 G A HOXA3 Silent p.F366F 0.11 TCGA-CM-6164-01 7 29035278 29035278 A C CPVL 3'UTR 0.45 TCGA-CM-6164-01 7 48313725 48313725 A G ABCA13 Missense_Mutation p.I1488V 0.30 benign(0.278) TCGA-CM-6164-01 7 48318629 48318629 A T ABCA13 Missense_Mutation p.D2613V 0.22 benign(0.018) TCGA-CM-6164-01 7 88963938 88963938 T C ZNF804B Missense_Mutation p.F548L 0.32 tolerated(0.47) benign(0.012) TCGA-CM-6164-01 8 124987479 124987479 G A FER1L6 Missense_Mutation p.V206I 0.30 tolerated(0.08) benign(0.079) TCGA-CM-6164-01 8 51617243 51617243 G A SNTG1 Silent p.L374L 0.10 TCGA-CM-6164-01 9 107521728 107521728 T A NIPSNAP3A 3'UTR 0.21 TCGA-CM-6164-01 9 116854683 116854683 C T KIF12 Silent p.T444T 0.29 TCGA-CM-6164-01 9 135985854 135985854 T C RALGDS Missense_Mutation p.N106S 0.08 tolerated(1) benign(0.118) TCGA-CM-6164-01 9 139379529 139379529 T C C9orf163 3'UTR 0.25 TCGA-CM-6164-01 9 66467413 66467413 G A RP11-262H14.1 Intron 0.38 TCGA-CM-6164-01 9 95263075 95263075 G C ECM2 Missense_Mutation p.S622C 0.14 tolerated(0.11) benign(0.02) TCGA-CM-6164-01 X 125685962 125685962 G A DCAF12L1 Silent p.S210S 0.19 TCGA-CM-6164-01 X 134156308 134156308 T C FAM127C Missense_Mutation p.D61G 0.06 deleterious(0) probably_damaging(0.996) TCGA-CM-6164-01 X 152815646 152815646 C T ATP2B3 Silent p.T575T 0.10 TCGA-CM-6164-01 X 153070326 153070326 G A PDZD4 Silent p.P264P 0.27 TCGA-CM-6164-01 X 29414505 29414505 C A IL1RAPL1 Missense_Mutation p.R165S 0.13 deleterious(0) benign(0.026) TCGA-CM-6164-01 X 32360390 32360390 G T DMD Silent p.R1917R 0.11 TCGA-CM-6164-01 X 50376378 50376378 C A SHROOM4 Missense_Mutation p.D899Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-CM-6164-01 X 54112318 54112318 C T FAM120C Missense_Mutation p.R890K 0.25 deleterious(0.02) possibly_damaging(0.574) TCGA-CM-6164-01 X 64738179 64738179 C T LAS1L Missense_Mutation p.V539I 0.27 tolerated(0.54) benign(0.001) TCGA-CM-6164-01 X 69457010 69457010 G A AWAT1 Silent p.S124S 0.24 TCGA-CM-6164-01 X 73960505 73960505 A G KIAA2022 Missense_Mutation p.M1296T 0.22 tolerated_low_confidence(0.67) benign(0.001) TCGA-CM-6164-01 X 79939575 79939575 T C BRWD3 Silent p.E1389E 0.44 TCGA-CM-6164-01 X 92927717 92927717 G T NAP1L3 Missense_Mutation p.P196H 0.07 tolerated(0.06) benign(0.285) TCGA-CM-6165-01 10 102737902 102737902 G A MRPL43 3'Flank 0.32 TCGA-CM-6165-01 10 114905821 114905821 C A TCF7L2 Nonsense_Mutation p.Y280* 0.41 TCGA-CM-6165-01 10 15146184 15146195 TGTCATACAGTT - RPP38 3'UTR 0.12 TCGA-CM-6165-01 10 26575380 26575380 G A GAD2 Missense_Mutation p.R448H 0.43 deleterious(0) probably_damaging(0.991) TCGA-CM-6165-01 10 49658837 49658837 G A ARHGAP22 Silent p.G461G 0.39 TCGA-CM-6165-01 10 73405688 73405688 G A CDH23 Missense_Mutation p.R6Q 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-CM-6165-01 10 73462355 73462355 C T CDH23 Silent p.N471N 0.34 TCGA-CM-6165-01 11 111369512 111369512 A C BTG4 5'UTR 0.37 TCGA-CM-6165-01 11 126391231 126391231 G T KIRREL3 Missense_Mutation p.P138T 0.43 tolerated(0.13) probably_damaging(1) TCGA-CM-6165-01 11 133790213 133790213 C T IGSF9B Missense_Mutation p.R1136Q 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CM-6165-01 11 19191996 19191996 G A ZDHHC13 Missense_Mutation p.G505R 0.35 deleterious(0) probably_damaging(0.999) TCGA-CM-6165-01 11 59480563 59480563 C T OR10V1 Silent p.Q252Q 0.06 TCGA-CM-6165-01 11 62388047 62388047 C T B3GAT3 Missense_Mutation p.R60Q 0.24 deleterious(0.04) benign(0.022) TCGA-CM-6165-01 11 63586091 63586091 A G C11orf84 Missense_Mutation p.R234G 0.10 deleterious(0.05) benign(0.217) TCGA-CM-6165-01 11 67259635 67259635 G A PITPNM1 Missense_Mutation p.R1202C 0.23 deleterious(0.03) probably_damaging(0.964) TCGA-CM-6165-01 11 76944110 76944110 A G GDPD4 Missense_Mutation p.I450T 0.35 deleterious(0.02) probably_damaging(0.979) TCGA-CM-6165-01 11 78780858 78780858 G T TENM4 Silent p.T44T 0.35 TCGA-CM-6165-01 11 82880499 82880499 G T PCF11 Missense_Mutation p.G1041V 0.40 deleterious(0) possibly_damaging(0.777) TCGA-CM-6165-01 11 84822733 84822733 G T DLG2 Missense_Mutation p.P110H 0.43 tolerated_low_confidence(0.08) possibly_damaging(0.713) TCGA-CM-6165-01 11 92600059 92600059 C T FAT3 Silent p.Y3937Y 0.09 TCGA-CM-6165-01 12 106857383 106857383 C T POLR3B Missense_Mutation p.R900C 0.08 deleterious(0) probably_damaging(1) TCGA-CM-6165-01 12 120119294 120119294 G C PRKAB1 3'UTR 0.67 TCGA-CM-6165-01 12 121600316 121600316 G A P2RX7 Missense_Mutation p.A176T 0.54 tolerated(0.44) benign(0.021) TCGA-CM-6165-01 12 126138480 126138480 G A TMEM132B Missense_Mutation p.E821K 0.36 tolerated(0.8) benign(0.124) TCGA-CM-6165-01 12 129559406 129559406 C A TMEM132D Missense_Mutation p.V772F 0.32 tolerated(0.1) benign(0.275) TCGA-CM-6165-01 12 4479466 4479466 G A FGF23 3'UTR 0.23 TCGA-CM-6165-01 12 49406872 49406872 G T PRKAG1 Missense_Mutation p.P11T 0.29 tolerated(0.08) benign(0.009) TCGA-CM-6165-01 13 96086058 96086058 G A CLDN10 5'UTR 0.13 TCGA-CM-6165-01 14 101520687 101520687 C T MIR382 RNA 0.12 TCGA-CM-6165-01 14 103802054 103802054 C G EIF5 5'UTR 0.34 TCGA-CM-6165-01 14 24723362 24723362 C T TGM1 Missense_Mutation p.V741I 0.42 tolerated(0.33) benign(0.075) TCGA-CM-6165-01 14 62550936 62550936 C A SYT16 Missense_Mutation p.P486Q 0.34 deleterious(0.03) benign(0.163) TCGA-CM-6165-01 14 90455387 90455387 G T TDP1 Missense_Mutation p.G424W 0.30 deleterious(0.03) possibly_damaging(0.622) TCGA-CM-6165-01 15 81601237 81601237 G T IL16 3'Flank 0.80 TCGA-CM-6165-01 16 4432496 4432496 C - VASN Frame_Shift_Del p.R542Gfs*86 0.33 TCGA-CM-6165-01 16 57017509 57017509 C A CETP Missense_Mutation p.F471L 0.43 deleterious(0.01) benign(0.029) TCGA-CM-6165-01 16 75565250 75565250 C A CHST5 5'UTR 0.29 TCGA-CM-6165-01 16 9857538 9857538 C T GRIN2A Missense_Mutation p.R1288H 0.40 deleterious(0) probably_damaging(1) TCGA-CM-6165-01 17 15522438 15522441 TGGG - CDRT1 Frame_Shift_Del p.T129Sfs*26 0.23 TCGA-CM-6165-01 17 36638765 36638765 G A ARHGAP23 Missense_Mutation p.R918H 0.18 tolerated(0.21) benign(0.003) TCGA-CM-6165-01 17 72443027 72443027 G A GPRC5C Missense_Mutation p.A441T 0.48 tolerated(0.28) benign(0.411) TCGA-CM-6165-01 17 7576852 7576852 C A TP53 Splice_Site p.X331_splice 0.32 TCGA-CM-6165-01 17 7736210 7736210 C T DNAH2 Silent p.S4314S 0.29 TCGA-CM-6165-01 17 9808339 9808339 G A RCVRN Silent p.Y53Y 0.36 TCGA-CM-6165-01 18 48346357 48346357 T A MRO 5'UTR 0.06 TCGA-CM-6165-01 18 48591825 48591825 G C SMAD4 Missense_Mutation p.E330Q 0.30 deleterious(0) probably_damaging(1) TCGA-CM-6165-01 18 55328687 55328688 - T ATP8B1 Frame_Shift_Ins p.I809Nfs*11 0.39 TCGA-CM-6165-01 19 11446187 11446187 C A RAB3D Missense_Mutation p.K136N 0.39 deleterious(0.01) possibly_damaging(0.81) TCGA-CM-6165-01 19 14034398 14034398 G T CC2D1A Missense_Mutation p.G601V 0.26 deleterious(0) probably_damaging(0.972) TCGA-CM-6165-01 19 18643019 18643019 C A FKBP8 Missense_Mutation p.G401V 0.31 deleterious(0.04) unknown(0) TCGA-CM-6165-01 19 22941352 22941352 G T ZNF99 Nonsense_Mutation p.Y453* 0.36 TCGA-CM-6165-01 19 36399188 36399188 C T TYROBP 5'UTR 0.32 TCGA-CM-6165-01 19 38843024 38843024 T C CATSPERG Missense_Mutation p.Y317H 0.09 deleterious(0) possibly_damaging(0.607) TCGA-CM-6165-01 19 42219051 42219051 G C CEACAM5 Missense_Mutation p.G196R 0.43 deleterious(0.01) probably_damaging(0.96) TCGA-CM-6165-01 19 49002260 49002260 A G LMTK3 Missense_Mutation p.V718A 0.45 benign(0.018) TCGA-CM-6165-01 19 49658100 49658100 C T HRC Missense_Mutation p.R132H 0.07 tolerated(1) benign(0) TCGA-CM-6165-01 19 49842688 49842688 C A CD37 Intron 0.27 TCGA-CM-6165-01 19 54444845 54444845 C T CACNG7 Silent p.A182A 0.37 TCGA-CM-6165-01 19 56104096 56104096 G A FIZ1 Missense_Mutation p.P404L 0.34 tolerated(0.4) benign(0.006) TCGA-CM-6165-01 19 57642572 57642572 C T USP29 Silent p.S843S 0.34 TCGA-CM-6165-01 19 9066117 9066117 G T MUC16 Missense_Mutation p.P7110H 0.35 unknown(0) TCGA-CM-6165-01 1 109607186 109607186 G A TAF13 Nonsense_Mutation p.R112* 0.35 TCGA-CM-6165-01 1 115118356 115118356 G T BCAS2 Missense_Mutation p.P92T 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-CM-6165-01 1 117660761 117660761 G A TRIM45 Missense_Mutation p.R373C 0.06 tolerated(0.19) benign(0) TCGA-CM-6165-01 1 1229287 1229287 C T ACAP3 Missense_Mutation p.G759D 0.48 deleterious(0.01) probably_damaging(0.977) TCGA-CM-6165-01 1 149763070 149763070 G A FCGR1A Silent p.T374T 0.38 TCGA-CM-6165-01 1 151018277 151018277 C T BNIPL Missense_Mutation p.R286W 0.29 deleterious(0) probably_damaging(0.965) TCGA-CM-6165-01 1 152383072 152383072 C T CRNN Silent p.A162A 0.36 TCGA-CM-6165-01 1 152883791 152883791 G T IVL Missense_Mutation p.Q506H 0.21 deleterious_low_confidence(0.01) benign(0.023) TCGA-CM-6165-01 1 158324221 158324221 G A CD1E Missense_Mutation p.R38H 0.32 tolerated(1) benign(0.01) TCGA-CM-6165-01 1 17083314 17083314 C T MST1L RNA 0.33 TCGA-CM-6165-01 1 17272038 17272038 C T CROCC Silent p.R691R 0.18 TCGA-CM-6165-01 1 173754477 173754477 A G KLHL20 3'UTR 0.40 TCGA-CM-6165-01 1 17588650 17588650 G A PADI3 Missense_Mutation p.S99N 0.36 tolerated(0.12) benign(0.139) TCGA-CM-6165-01 1 180914682 180914682 G A KIAA1614 Silent p.R1177R 0.37 TCGA-CM-6165-01 1 186863241 186863241 G T PLA2G4A Missense_Mutation p.M92I 0.34 deleterious(0.03) probably_damaging(0.939) TCGA-CM-6165-01 1 203681203 203681203 G T ATP2B4 Missense_Mutation p.G716V 0.46 deleterious(0) benign(0.255) TCGA-CM-6165-01 1 207700226 207700226 C T CR1 Missense_Mutation p.R339C 0.04 deleterious(0.03) possibly_damaging(0.848) TCGA-CM-6165-01 1 214185006 214185006 G T PROX1 Missense_Mutation p.C659F 0.29 deleterious(0.03) possibly_damaging(0.813) TCGA-CM-6165-01 1 225599132 225599132 G C LBR Silent p.V365V 0.39 TCGA-CM-6165-01 1 226074390 226074390 C T LEFTY1 3'UTR 0.38 TCGA-CM-6165-01 1 247902319 247902319 A G OR14K1 Missense_Mutation p.S135G 0.35 tolerated(0.07) benign(0.013) TCGA-CM-6165-01 1 28948460 28948460 C T TAF12 Missense_Mutation p.G45E 0.37 tolerated(0.17) benign(0.013) TCGA-CM-6165-01 1 55066967 55066967 G A ACOT11 Missense_Mutation p.A304T 0.25 deleterious(0.01) probably_damaging(1) TCGA-CM-6165-01 1 62677114 62677114 G A L1TD1 3'UTR 0.43 TCGA-CM-6165-01 1 67486115 67486115 G A SLC35D1 Silent p.Y271Y 0.30 TCGA-CM-6165-01 1 70502308 70502308 G T LRRC7 Splice_Site p.X725_splice 0.25 TCGA-CM-6165-01 1 94502896 94502896 A G ABCA4 Silent p.N1206N 0.17 TCGA-CM-6165-01 20 36407614 36407614 C T CTNNBL1 Missense_Mutation p.T303M 0.04 deleterious(0) possibly_damaging(0.704) TCGA-CM-6165-01 20 8717699 8717699 G A PLCB1 Missense_Mutation p.D690N 0.30 deleterious(0) possibly_damaging(0.703) TCGA-CM-6165-01 21 43896048 43896048 C T RSPH1 Silent p.R279R 0.18 TCGA-CM-6165-01 21 45774536 45774536 A T TRPM2 Missense_Mutation p.E57D 0.04 tolerated(0.16) benign(0.018) TCGA-CM-6165-01 22 39427788 39427788 C A APOBEC3D Silent p.V284V 0.33 TCGA-CM-6165-01 22 42992241 42992241 C T POLDIP3 Missense_Mutation p.R255Q 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-CM-6165-01 2 101634489 101634489 A G RPL31 Intron 0.29 TCGA-CM-6165-01 2 128255751 128255752 - TCT IWS1 In_Frame_Ins p.E509dup 0.35 TCGA-CM-6165-01 2 131798940 131798940 C A ARHGEF4 Silent p.I414I 0.27 TCGA-CM-6165-01 2 137748506 137748506 A C THSD7B Intron 0.08 TCGA-CM-6165-01 2 165956868 165956868 G A SCN3A Missense_Mutation p.R1304W 0.05 deleterious(0) probably_damaging(1) TCGA-CM-6165-01 2 168100068 168100068 C A XIRP2 Silent p.L722L 0.36 TCGA-CM-6165-01 2 179585698 179585698 G A TTN Missense_Mutation p.A7683V 0.31 TCGA-CM-6165-01 2 217541588 217541588 G A IGFBP5 Silent p.G235G 0.35 TCGA-CM-6165-01 2 223169471 223169471 G A CCDC140 3'UTR 0.38 TCGA-CM-6165-01 2 233470816 233470816 G T AC073254.1 Intron 0.38 TCGA-CM-6165-01 2 27566203 27566203 C T GTF3C2 Silent p.Q73Q 0.44 TCGA-CM-6165-01 2 55086763 55086763 G C EML6 Missense_Mutation p.A584P 0.30 deleterious(0.03) probably_damaging(0.984) TCGA-CM-6165-01 2 63272653 63272653 A G EHBP1 3'UTR 0.30 TCGA-CM-6165-01 2 88747959 88747959 C T FOXI3 RNA 0.37 TCGA-CM-6165-01 2 95775692 95775692 C A MRPS5 Missense_Mutation p.K124N 0.38 deleterious(0) probably_damaging(0.964) TCGA-CM-6165-01 3 122255900 122255900 G C PARP9 Missense_Mutation p.Q631E 0.30 tolerated(1) benign(0.005) TCGA-CM-6165-01 3 1369219 1369219 G T CNTN6 Missense_Mutation p.A388S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6165-01 3 14860761 14860761 C T FGD5 Silent p.T61T 0.38 TCGA-CM-6165-01 3 183905967 183905967 G T ABCF3 Missense_Mutation p.G203V 0.35 deleterious(0) probably_damaging(1) TCGA-CM-6165-01 3 25656960 25656960 C A TOP2B Nonsense_Mutation p.E1152* 0.43 TCGA-CM-6165-01 3 27243065 27243065 C G NEK10 Missense_Mutation p.E743Q 0.33 deleterious(0.04) benign(0.102) TCGA-CM-6165-01 3 99513283 99513283 G T COL8A1 Nonsense_Mutation p.E180* 0.30 TCGA-CM-6165-01 4 114158192 114158192 C T ANK2 Missense_Mutation p.A178V 0.33 possibly_damaging(0.555) TCGA-CM-6165-01 4 114277825 114277825 A T ANK2 Missense_Mutation p.E2684V 0.43 probably_damaging(0.97) TCGA-CM-6165-01 4 140187887 140187887 T A MGARP Missense_Mutation p.T197S 0.37 tolerated(0.27) benign(0.037) TCGA-CM-6165-01 4 87028676 87028676 G T MAPK10 Intron 0.23 TCGA-CM-6165-01 5 112175493 112175493 T - APC Frame_Shift_Del p.I1401Mfs*14 0.42 TCGA-CM-6165-01 5 115783460 115783460 C T SEMA6A Missense_Mutation p.V648I 0.30 tolerated(0.35) probably_damaging(0.993) TCGA-CM-6165-01 5 140627083 140627083 A G PCDHB15 Missense_Mutation p.D646G 0.42 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CM-6165-01 5 140762741 140762741 G A PCDHGA7 Missense_Mutation p.R92Q 0.31 deleterious_low_confidence(0.01) probably_damaging(0.944) TCGA-CM-6165-01 5 140812464 140812464 C G PCDHGA12 Missense_Mutation p.A713G 0.31 deleterious_low_confidence(0.04) benign(0.124) TCGA-CM-6165-01 5 179149917 179149917 A G CANX Missense_Mutation p.D432G 0.34 deleterious(0.04) probably_damaging(1) TCGA-CM-6165-01 5 5318278 5318278 C T ADAMTS16 Missense_Mutation p.T1148M 0.39 tolerated(0.16) benign(0.16) TCGA-CM-6165-01 5 63509832 63509832 A G RNF180 Missense_Mutation p.K227E 0.40 deleterious(0.01) possibly_damaging(0.636) TCGA-CM-6165-01 5 79769626 79769626 T A ZFYVE16 Missense_Mutation p.I1414K 0.26 deleterious(0) probably_damaging(0.951) TCGA-CM-6165-01 6 111880659 111880660 - T TRAF3IP2 Nonsense_Mutation p.Y549* 0.21 TCGA-CM-6165-01 6 117715441 117715441 C A ROS1 Missense_Mutation p.A350S 0.42 tolerated(0.2) benign(0.114) TCGA-CM-6165-01 6 128319998 128319998 C T PTPRK Missense_Mutation p.R849H 0.37 tolerated(0.13) probably_damaging(0.993) TCGA-CM-6165-01 6 146480696 146480696 C T GRM1 Missense_Mutation p.R305C 0.21 deleterious(0) probably_damaging(0.997) TCGA-CM-6165-01 6 152738118 152738118 G A SYNE1 Silent p.G1818G 0.41 TCGA-CM-6165-01 6 169637752 169637752 C T THBS2 Missense_Mutation p.R423Q 0.40 tolerated(0.06) probably_damaging(0.983) TCGA-CM-6165-01 6 41196490 41196490 G A TREML4 Silent p.Q34Q 0.44 TCGA-CM-6165-01 7 102815771 102815771 C T DPY19L2P2 RNA 0.40 TCGA-CM-6165-01 7 150714149 150714149 C T ATG9B Missense_Mutation p.V755M 0.46 tolerated(0.09) benign(0.412) TCGA-CM-6165-01 7 43663433 43663433 T C STK17A Missense_Mutation p.V289A 0.08 tolerated(0.76) benign(0.004) TCGA-CM-6165-01 7 4831152 4831152 C T AP5Z1 3'UTR 0.40 TCGA-CM-6165-01 7 48312514 48312514 G A ABCA13 Missense_Mutation p.S1084N 0.35 benign(0.002) TCGA-CM-6165-01 7 5568993 5568993 C A ACTB Silent p.V54V 0.36 TCGA-CM-6165-01 7 72985006 72985006 C A TBL2 Missense_Mutation p.G392V 0.24 deleterious(0.02) possibly_damaging(0.801) TCGA-CM-6165-01 7 94298133 94298133 C T PEG10 3'UTR 0.36 TCGA-CM-6165-01 8 10469699 10469699 C A RP1L1 Missense_Mutation p.G637W 0.36 probably_damaging(0.962) TCGA-CM-6165-01 8 143695301 143695301 C T ARC Missense_Mutation p.R111H 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CM-6165-01 8 145537519 145537519 C T HSF1 Missense_Mutation p.P420L 0.40 deleterious(0.03) probably_damaging(0.925) TCGA-CM-6165-01 8 23708861 23708861 C T STC1 Missense_Mutation p.V149I 0.37 tolerated(0.89) benign(0.006) TCGA-CM-6165-01 8 48874748 48874748 G T MCM4 Missense_Mutation p.G124V 0.30 tolerated(0.56) benign(0.001) TCGA-CM-6165-01 9 136595278 136595278 C T SARDH Missense_Mutation p.R241H 0.36 tolerated(0.17) benign(0.013) TCGA-CM-6165-01 9 139345811 139345811 C T SEC16A Missense_Mutation p.R2070H 0.38 tolerated(0.21) benign(0.006) TCGA-CM-6165-01 9 5929105 5929105 G A KIAA2026 Missense_Mutation p.R813C 0.33 deleterious(0) probably_damaging(0.95) TCGA-CM-6165-01 9 86592605 86592605 T A HNRNPK Missense_Mutation p.K52M 0.34 deleterious(0) probably_damaging(1) TCGA-CM-6165-01 9 91616088 91616088 G T S1PR3 5'UTR 0.30 TCGA-CM-6165-01 X 105281057 105281057 G A SERPINA7 5'UTR 0.38 TCGA-CM-6165-01 X 118124453 118124453 G A LONRF3 Missense_Mutation p.D449N 0.70 tolerated(0.51) benign(0.032) TCGA-CM-6165-01 X 135795515 135795515 G A ARHGEF6 Silent p.I249I 0.75 TCGA-CM-6165-01 X 153533487 153533487 C T TKTL1 Intron 0.18 TCGA-CM-6165-01 X 27999218 27999218 G A DCAF8L1 Silent p.D78D 0.04 TCGA-CM-6165-01 X 37663350 37663350 A G CYBB Missense_Mutation p.K373R 0.73 tolerated(0.37) benign(0.033) TCGA-CM-6165-01 X 41022042 41022042 G A USP9X Splice_Site p.X633_splice 0.71 TCGA-CM-6166-01 10 129207382 129207382 G A DOCK1 Missense_Mutation p.A1381T 0.28 deleterious(0) possibly_damaging(0.658) TCGA-CM-6166-01 10 50028381 50028381 G A WDFY4 Missense_Mutation p.A1870T 0.36 tolerated(0.38) benign(0.005) TCGA-CM-6166-01 10 859016 859016 G A LARP4B Silent p.P689P 0.37 TCGA-CM-6166-01 10 93695421 93695421 C T BTAF1 Missense_Mutation p.R8C 0.32 deleterious(0) probably_damaging(0.999) TCGA-CM-6166-01 11 131240685 131240685 G T NTM 5'UTR 0.21 TCGA-CM-6166-01 11 32460621 32460621 C T WT1 5'Flank 0.57 TCGA-CM-6166-01 11 56230205 56230205 G A OR5M9 Missense_Mutation p.R225C 0.65 deleterious(0.03) benign(0.103) TCGA-CM-6166-01 11 823843 823843 C T PNPLA2 Missense_Mutation p.R303W 0.17 deleterious(0) possibly_damaging(0.586) TCGA-CM-6166-01 11 92615973 92615973 C T FAT3 Silent p.F4117F 0.52 TCGA-CM-6166-01 12 132334499 132334499 C T MMP17 Missense_Mutation p.R453C 0.81 deleterious(0.05) benign(0.329) TCGA-CM-6166-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.83 deleterious(0.03) possibly_damaging(0.876) TCGA-CM-6166-01 12 49717394 49717394 G A TROAP Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.996) TCGA-CM-6166-01 12 57598443 57598443 G A LRP1 Missense_Mutation p.R3702H 0.40 probably_damaging(0.998) TCGA-CM-6166-01 14 104380221 104380223 AAC - C14orf2 Intron 0.43 TCGA-CM-6166-01 14 105246457 105246457 C T AKT1 Missense_Mutation p.R48H 0.38 tolerated(0.59) possibly_damaging(0.883) TCGA-CM-6166-01 14 105269415 105269415 G T ZBTB42 3'UTR 0.67 TCGA-CM-6166-01 14 20920175 20920175 G A OSGEP Silent p.A123A 0.42 TCGA-CM-6166-01 14 86088312 86088312 G T FLRT2 Missense_Mutation p.D152Y 0.34 deleterious(0) probably_damaging(0.961) TCGA-CM-6166-01 15 42378437 42378437 G A PLA2G4D Missense_Mutation p.R121W 0.36 tolerated(0.11) possibly_damaging(0.82) TCGA-CM-6166-01 15 43814519 43814519 T A MAP1A Missense_Mutation p.L283H 0.35 probably_damaging(0.999) TCGA-CM-6166-01 15 44087162 44087162 T A SERINC4 3'UTR 0.41 TCGA-CM-6166-01 15 48789468 48789468 C A FBN1 Missense_Mutation p.C763F 0.26 probably_damaging(0.999) TCGA-CM-6166-01 16 2816591 2816591 G A SRRM2 Missense_Mutation p.R2021Q 0.41 unknown(0) TCGA-CM-6166-01 16 3781301 3781301 C T CREBBP Silent p.T1688T 0.50 TCGA-CM-6166-01 16 50383933 50383933 C T BRD7 Splice_Site p.X197_splice 0.49 TCGA-CM-6166-01 16 76572213 76572213 C A CNTNAP4 Missense_Mutation p.L993I 0.32 tolerated(0.1) possibly_damaging(0.654) TCGA-CM-6166-01 16 86601059 86601059 G A FOXC2 Missense_Mutation p.V40I 0.13 deleterious(0.01) probably_damaging(0.972) TCGA-CM-6166-01 16 88706665 88706665 G A IL17C 3'UTR 0.30 TCGA-CM-6166-01 17 19188933 19188933 C T EPN2 Missense_Mutation p.S199L 0.67 tolerated(0.09) possibly_damaging(0.647) TCGA-CM-6166-01 17 72999909 72999909 G A CDR2L Missense_Mutation p.G380R 0.57 tolerated(0.13) probably_damaging(0.927) TCGA-CM-6166-01 17 7579470 7579471 - G TP53 Frame_Shift_Ins p.V73Rfs*76 0.37 TCGA-CM-6166-01 18 8825247 8825247 C A SOGA2 Silent p.R1247R 0.57 TCGA-CM-6166-01 19 14574772 14574772 G A PKN1 Missense_Mutation p.R549Q 0.29 tolerated(0.68) benign(0.024) TCGA-CM-6166-01 19 15342660 15342660 G T EPHX3 Missense_Mutation p.R86S 0.30 deleterious(0) benign(0.074) TCGA-CM-6166-01 19 16593380 16593380 G A CALR3 Missense_Mutation p.P267S 0.28 deleterious(0.01) benign(0.087) TCGA-CM-6166-01 19 22271465 22271465 C A ZNF257 Missense_Mutation p.Q305K 0.25 tolerated(1) benign(0.001) TCGA-CM-6166-01 19 33321444 33321444 G A SLC7A9 3'UTR 0.52 TCGA-CM-6166-01 19 39908601 39908601 A G PLEKHG2 Silent p.E313E 0.19 TCGA-CM-6166-01 19 40196521 40196521 C T LGALS14 5'UTR 0.34 TCGA-CM-6166-01 19 41351933 41351933 C A CYP2A6 Missense_Mutation p.G301W 0.55 possibly_damaging(0.86) TCGA-CM-6166-01 19 49965880 49965880 G A ALDH16A1 Silent p.R322R 0.29 TCGA-CM-6166-01 19 52133151 52133151 C T SIGLEC5 Missense_Mutation p.R119H 0.18 tolerated(0.07) benign(0.309) TCGA-CM-6166-01 19 57326722 57326722 G A PEG3 Missense_Mutation p.R1030W 0.26 deleterious(0.02) benign(0.022) TCGA-CM-6166-01 19 8467069 8467069 C T RAB11B Silent p.H112H 0.29 TCGA-CM-6166-01 1 150318498 150318498 C T PRPF3 Nonsense_Mutation p.R549* 0.30 TCGA-CM-6166-01 1 201294898 201294898 G A PKP1 Missense_Mutation p.A701T 0.35 tolerated(0.05) benign(0.439) TCGA-CM-6166-01 1 202127325 202127325 C T PTPN7 Missense_Mutation p.R181H 0.32 tolerated(0.09) possibly_damaging(0.734) TCGA-CM-6166-01 1 205819057 205819057 G A PM20D1 Silent p.R48R 0.39 TCGA-CM-6166-01 1 23403832 23403832 C T KDM1A Nonsense_Mutation p.Q616* 0.37 TCGA-CM-6166-01 1 248458165 248458165 C A OR2T12 Missense_Mutation p.C239F 0.41 deleterious(0) probably_damaging(1) TCGA-CM-6166-01 1 248458201 248458201 C T OR2T12 Missense_Mutation p.R227H 0.36 tolerated(0.42) benign(0.031) TCGA-CM-6166-01 1 248525116 248525116 C A OR2T4 Silent p.I78I 0.38 TCGA-CM-6166-01 1 248685289 248685289 C T OR2G6 Silent p.L114L 0.37 TCGA-CM-6166-01 1 26570718 26570718 G T CEP85 Silent p.S39S 0.45 TCGA-CM-6166-01 1 27874319 27874319 G A AHDC1 Silent p.H1436H 0.25 TCGA-CM-6166-01 1 3415747 3415747 G T MEGF6 Missense_Mutation p.Q1017K 0.42 tolerated(0.25) benign(0.071) TCGA-CM-6166-01 1 36202610 36202610 G A CLSPN Missense_Mutation p.H1272Y 0.47 tolerated(0.18) benign(0.004) TCGA-CM-6166-01 20 34136303 34136303 G A ERGIC3 Missense_Mutation p.R168H 0.09 tolerated(0.05) benign(0.021) TCGA-CM-6166-01 20 45129982 45129982 G A ZNF334 Missense_Mutation p.R666C 0.40 tolerated(0.22) benign(0.019) TCGA-CM-6166-01 20 50405551 50405551 C T SALL4 Missense_Mutation p.R864H 0.42 deleterious(0.01) probably_damaging(0.931) TCGA-CM-6166-01 21 19775917 19775917 G T TMPRSS15 Missense_Mutation p.S8Y 0.37 tolerated(0.06) benign(0.211) TCGA-CM-6166-01 21 28210160 28210160 C A ADAMTS1 Missense_Mutation p.C881F 0.08 deleterious(0) probably_damaging(1) TCGA-CM-6166-01 22 17600400 17600400 C T CECR6 Missense_Mutation p.A540T 0.41 tolerated_low_confidence(0.72) benign(0.016) TCGA-CM-6166-01 2 121748348 121748348 A C GLI2 3'UTR 0.27 TCGA-CM-6166-01 2 125262099 125262100 - A CNTNAP5 Frame_Shift_Ins p.M432Nfs*7 0.27 TCGA-CM-6166-01 2 127950725 127950725 C T CYP27C1 Missense_Mutation p.R316H 0.10 deleterious(0) probably_damaging(0.995) TCGA-CM-6166-01 2 201722695 201722695 C G CLK1 Splice_Site p.X264_splice 0.32 TCGA-CM-6166-01 2 239140691 239140691 T C AC016757.3 5'Flank 0.54 TCGA-CM-6166-01 2 58362326 58362326 G A VRK2 Missense_Mutation p.S283N 0.05 tolerated(0.43) benign(0.134) TCGA-CM-6166-01 2 68692224 68692224 C T FBXO48 Silent p.A18A 0.27 TCGA-CM-6166-01 3 1189625 1189625 G T CNTN6 5'UTR 0.32 TCGA-CM-6166-01 3 123368037 123368037 C T MYLK Silent p.P1431P 0.47 TCGA-CM-6166-01 3 139097030 139097030 A C COPB2 Missense_Mutation p.D119E 0.32 deleterious(0) probably_damaging(1) TCGA-CM-6166-01 3 49456490 49456490 A T AMT Missense_Mutation p.L264Q 0.29 deleterious(0) probably_damaging(1) TCGA-CM-6166-01 3 62459934 62459934 G A CADPS Missense_Mutation p.P1131S 0.43 tolerated(0.15) benign(0.235) TCGA-CM-6166-01 4 120190984 120190984 G A USP53 Missense_Mutation p.R476Q 0.30 tolerated(0.11) benign(0.044) TCGA-CM-6166-01 4 22422660 22422660 G A GPR125 Missense_Mutation p.T553M 0.41 tolerated(0.16) possibly_damaging(0.614) TCGA-CM-6166-01 4 85658517 85658517 G A WDFY3 Missense_Mutation p.R2193C 0.38 deleterious(0.04) possibly_damaging(0.872) TCGA-CM-6166-01 5 112170762 112170765 CTTA - APC Frame_Shift_Del p.Y622Gfs*7 0.39 TCGA-CM-6166-01 5 112175271 112175271 C T APC Missense_Mutation p.S1327L 0.38 benign(0.024) TCGA-CM-6166-01 5 112175319 112175319 C G APC Missense_Mutation p.S1343C 0.29 possibly_damaging(0.469) TCGA-CM-6166-01 5 112175370 112175370 C G APC Missense_Mutation p.S1360C 0.35 probably_damaging(0.998) TCGA-CM-6166-01 5 112175390 112175390 C G APC Missense_Mutation p.Q1367E 0.37 probably_damaging(0.983) TCGA-CM-6166-01 5 112175502 112175502 C T APC Missense_Mutation p.S1404F 0.40 probably_damaging(0.998) TCGA-CM-6166-01 5 112175507 112175507 C T APC Nonsense_Mutation p.Q1406* 0.39 TCGA-CM-6166-01 5 13883131 13883131 G T DNAH5 Missense_Mutation p.P1019H 0.41 possibly_damaging(0.893) TCGA-CM-6166-01 5 140182838 140182838 G A PCDHA3 Missense_Mutation p.A686T 0.35 tolerated_low_confidence(0.14) benign(0.021) TCGA-CM-6166-01 5 150660574 150660574 C A SLC36A3 Splice_Site p.X423_splice 0.42 TCGA-CM-6166-01 5 154397579 154397579 G T KIF4B 3'UTR 0.37 TCGA-CM-6166-01 5 180166257 180166257 G A OR2Y1 Missense_Mutation p.R268C 0.32 deleterious(0) possibly_damaging(0.532) TCGA-CM-6166-01 5 19473590 19473590 G A CDH18 Silent p.T706T 0.03 TCGA-CM-6166-01 5 19473591 19473591 G T CDH18 Missense_Mutation p.T706N 0.04 tolerated(0.52) benign(0.037) TCGA-CM-6166-01 5 64100174 64100174 C T CWC27 Missense_Mutation p.A300V 0.40 tolerated(0.29) benign(0.001) TCGA-CM-6166-01 5 79375866 79375866 T C THBS4 Missense_Mutation p.F884L 0.34 tolerated(0.59) probably_damaging(0.984) TCGA-CM-6166-01 6 407661 407661 C T IRF4 3'UTR 0.43 TCGA-CM-6166-01 6 69665993 69665993 C T BAI3 Missense_Mutation p.R425W 0.45 deleterious(0) probably_damaging(0.998) TCGA-CM-6166-01 6 96660895 96660895 C A FUT9 3'UTR 0.32 TCGA-CM-6166-01 7 106508891 106508891 C G PIK3CG Missense_Mutation p.H295Q 0.24 tolerated(1) benign(0.006) TCGA-CM-6166-01 7 114655866 114655866 C T MDFIC Silent p.D315D 0.06 TCGA-CM-6166-01 7 11468722 11468722 C A THSD7A Missense_Mutation p.C1032F 0.32 deleterious(0) probably_damaging(0.999) TCGA-CM-6166-01 7 57187636 57187636 C T ZNF479 Missense_Mutation p.E496K 0.04 tolerated(0.18) benign(0.038) TCGA-CM-6166-01 8 10177399 10177399 G A MSRA Missense_Mutation p.R148H 0.53 deleterious(0) probably_damaging(0.988) TCGA-CM-6166-01 8 117869684 117869684 T A RAD21 Silent p.I170I 0.12 TCGA-CM-6166-01 8 41522455 41522455 G A ANK1 Intron 0.34 TCGA-CM-6166-01 8 55533806 55533806 C T RP1 Missense_Mutation p.R94C 0.23 deleterious(0.05) benign(0.117) TCGA-CM-6166-01 8 95653515 95653515 G A ESRP1 5'UTR 0.56 TCGA-CM-6166-01 9 112141894 112141894 C A PTPN3 Missense_Mutation p.C895F 0.38 deleterious(0) possibly_damaging(0.888) TCGA-CM-6166-01 9 127912170 127912170 A C PPP6C Missense_Mutation p.C271G 0.32 deleterious(0) probably_damaging(1) TCGA-CM-6166-01 9 40774518 40774518 C T ZNF658 Missense_Mutation p.D253N 0.34 tolerated(0.07) possibly_damaging(0.755) TCGA-CM-6166-01 9 70490107 70490107 G A CBWD5 5'UTR 0.34 TCGA-CM-6166-01 X 101623995 101623995 C T NXF2B Missense_Mutation p.R161Q 0.30 tolerated(0.09) benign(0.036) TCGA-CM-6166-01 X 108619206 108619206 G T GUCY2F Silent p.G1083G 0.58 TCGA-CM-6166-01 X 108867794 108867794 G A KCNE1L 3'UTR 0.71 TCGA-CM-6166-01 X 118109409 118109409 G A LONRF3 Silent p.P222P 0.27 TCGA-CM-6166-01 X 120009264 120009264 G A CT47B1 Silent p.I87I 0.58 TCGA-CM-6166-01 X 122536914 122536914 G A GRIA3 Missense_Mutation p.D384N 0.26 tolerated(0.27) benign(0.288) TCGA-CM-6166-01 X 140969480 140969480 C A MAGEC3 Silent p.G269G 0.60 TCGA-CM-6166-01 X 148607660 148607660 A G IDS Intron 0.54 TCGA-CM-6166-01 X 153594579 153594579 G A FLNA Silent p.G414G 0.55 TCGA-CM-6166-01 X 70149561 70149561 G A SLC7A3 Missense_Mutation p.S96L 0.56 deleterious(0) probably_damaging(0.996) TCGA-CM-6166-01 X 73524574 73524574 C T ZCCHC13 Missense_Mutation p.P158L 0.07 tolerated_low_confidence(0.12) benign(0) TCGA-CM-6166-01 X 73961570 73961570 C A KIAA2022 Missense_Mutation p.G941V 0.22 tolerated_low_confidence(0.05) benign(0.011) TCGA-CM-6167-01 10 102749514 102749514 C T C10orf2 Missense_Mutation p.R453W 0.14 deleterious(0) probably_damaging(0.948) TCGA-CM-6167-01 10 124800111 124800111 T A ACADSB Missense_Mutation p.L145I 0.14 tolerated(0.08) benign(0.025) TCGA-CM-6167-01 10 45406968 45406968 T A TMEM72 Missense_Mutation p.L3H 0.12 tolerated(0.57) possibly_damaging(0.79) TCGA-CM-6167-01 10 45430235 45430235 G A TMEM72 Missense_Mutation p.G161S 0.14 tolerated(0.82) probably_damaging(0.918) TCGA-CM-6167-01 10 47087152 47087152 G A NPY4R Missense_Mutation p.M123I 0.08 tolerated(0.53) benign(0.062) TCGA-CM-6167-01 11 120976537 120976537 C A TECTA Intron 0.22 TCGA-CM-6167-01 11 12247785 12247785 C T MICAL2 Nonsense_Mutation p.R586* 0.16 TCGA-CM-6167-01 11 22363281 22363281 G T SLC17A6 Missense_Mutation p.M98I 0.17 deleterious(0.02) possibly_damaging(0.855) TCGA-CM-6167-01 11 63672414 63672414 G T MARK2 Missense_Mutation p.L611F 0.13 deleterious(0.02) possibly_damaging(0.623) TCGA-CM-6167-01 11 92623745 92623745 G A FAT3 Silent p.G4412G 0.12 TCGA-CM-6167-01 12 129100824 129100824 G A TMEM132C Missense_Mutation p.V417M 0.10 deleterious(0.03) possibly_damaging(0.469) TCGA-CM-6167-01 12 48143196 48143196 G T RAPGEF3 Missense_Mutation p.Q340K 0.08 deleterious(0.04) benign(0.098) TCGA-CM-6167-01 12 52681026 52681026 G A KRT81 Silent p.A369A 0.09 TCGA-CM-6167-01 12 62902281 62902281 G A MON2 Intron 0.09 TCGA-CM-6167-01 14 52520963 52520963 C A NID2 Missense_Mutation p.A282S 0.14 deleterious(0.03) possibly_damaging(0.899) TCGA-CM-6167-01 14 61920061 61920061 C A PRKCH Missense_Mutation p.S317Y 0.11 deleterious(0.03) possibly_damaging(0.885) TCGA-CM-6167-01 15 41750043 41750043 C A RTF1 Missense_Mutation p.R211S 0.13 deleterious(0.01) possibly_damaging(0.602) TCGA-CM-6167-01 15 76452462 76452462 G A C15orf27 Missense_Mutation p.V137M 0.15 deleterious(0) possibly_damaging(0.596) TCGA-CM-6167-01 15 83218359 83218359 G A CPEB1 Missense_Mutation p.P417L 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-CM-6167-01 15 94913352 94913352 G A MCTP2 Missense_Mutation p.G509S 0.13 deleterious(0) probably_damaging(0.999) TCGA-CM-6167-01 16 3304439 3304439 G A MEFV Missense_Mutation p.A210V 0.32 tolerated(0.08) benign(0.436) TCGA-CM-6167-01 16 5105307 5105307 G A C16orf89 Missense_Mutation p.R270W 0.16 tolerated(0.08) benign(0.025) TCGA-CM-6167-01 16 65016136 65016136 C T CDH11 Silent p.P356P 0.23 TCGA-CM-6167-01 16 84070309 84070309 T C SLC38A8 Missense_Mutation p.K129R 0.09 tolerated(0.08) probably_damaging(0.914) TCGA-CM-6167-01 16 857645 857645 A G PRR25 Silent p.T214T 0.13 TCGA-CM-6167-01 17 29283318 29283318 C T ADAP2 Silent p.Y314Y 0.12 TCGA-CM-6167-01 17 36493554 36493554 C T GPR179 Missense_Mutation p.R318H 0.10 tolerated(0.18) benign(0.066) TCGA-CM-6167-01 17 49710998 49710998 C T CA10 Missense_Mutation p.R268H 0.12 deleterious(0) probably_damaging(0.999) TCGA-CM-6167-01 17 7577139 7577139 G A TP53 Missense_Mutation p.R267W 0.24 tolerated(0.05) possibly_damaging(0.728) TCGA-CM-6167-01 17 76677079 76677079 G A CYTH1 Missense_Mutation p.R313W 0.11 deleterious(0) probably_damaging(0.978) TCGA-CM-6167-01 18 55024423 55024423 G A ST8SIA3 Silent p.T194T 0.17 TCGA-CM-6167-01 18 627355 627356 - G CLUL1 Frame_Shift_Ins p.F228Cfs*7 0.12 TCGA-CM-6167-01 19 1014337 1014337 G A TMEM259 Missense_Mutation p.R121C 0.16 deleterious(0) probably_damaging(0.964) TCGA-CM-6167-01 19 35533425 35533425 G A HPN Silent p.E5E 0.09 TCGA-CM-6167-01 19 35850237 35850237 G A FFAR3 Missense_Mutation p.V149M 0.14 deleterious(0) probably_damaging(0.917) TCGA-CM-6167-01 19 4053968 4053968 C T ZBTB7A Splice_Site p.X421_splice 0.10 TCGA-CM-6167-01 19 47884214 47884214 G A DHX34 Missense_Mutation p.A1042T 0.09 tolerated(0.42) benign(0.003) TCGA-CM-6167-01 19 48197473 48197473 C T GLTSCR1 Silent p.H795H 0.15 TCGA-CM-6167-01 19 48967915 48967915 T A KCNJ14 Missense_Mutation p.C398S 0.10 tolerated(1) possibly_damaging(0.587) TCGA-CM-6167-01 19 50361890 50361890 C T PTOV1 Missense_Mutation p.R341W 0.08 deleterious(0) benign(0.358) TCGA-CM-6167-01 19 57647192 57647192 G A ZIM3 Silent p.A171A 0.13 TCGA-CM-6167-01 1 110655092 110655092 G A UBL4B 5'UTR 0.17 TCGA-CM-6167-01 1 1290417 1290417 C T MXRA8 Silent p.V198V 0.21 TCGA-CM-6167-01 1 15789903 15789903 C T CELA2A Silent p.L127L 0.13 TCGA-CM-6167-01 1 186088406 186088406 C T HMCN1 Nonsense_Mutation p.R3978* 0.32 TCGA-CM-6167-01 1 201952218 201952218 T C RNPEP Missense_Mutation p.Y142H 0.28 deleterious(0) probably_damaging(0.959) TCGA-CM-6167-01 1 202977854 202977854 G T TMEM183A Missense_Mutation p.D95Y 0.33 tolerated(0.21) possibly_damaging(0.81) TCGA-CM-6167-01 1 223286289 223286289 G A TLR5 Nonsense_Mutation p.R29* 0.12 TCGA-CM-6167-01 1 235969311 235969311 G C LYST Missense_Mutation p.A1042G 0.36 tolerated_low_confidence(0.1) benign(0.015) TCGA-CM-6167-01 1 237765406 237765406 A C RYR2 Missense_Mutation p.I1560L 0.08 benign(0.055) TCGA-CM-6167-01 1 248551109 248551109 C A OR2T6 Missense_Mutation p.S67Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-CM-6167-01 1 38061457 38061457 C G GNL2 5'UTR 0.17 TCGA-CM-6167-01 1 89528763 89528763 G T GBP1 Missense_Mutation p.S52Y 0.13 deleterious(0) probably_damaging(1) TCGA-CM-6167-01 20 43552839 43552839 T C PABPC1L Missense_Mutation p.I305T 0.10 deleterious(0) possibly_damaging(0.697) TCGA-CM-6167-01 20 44756966 44756966 T A CD40 Intron 0.30 TCGA-CM-6167-01 21 19628892 19628892 C A CHODL Missense_Mutation p.S49Y 0.15 deleterious(0.01) possibly_damaging(0.793) TCGA-CM-6167-01 21 35469062 35469062 C T SLC5A3 Missense_Mutation p.T522M 0.24 deleterious(0) possibly_damaging(0.886) TCGA-CM-6167-01 22 47022787 47022787 G A GRAMD4 Missense_Mutation p.E31K 0.12 deleterious(0) probably_damaging(0.995) TCGA-CM-6167-01 22 50928064 50928064 G A MIOX Missense_Mutation p.R247Q 0.17 tolerated(0.79) benign(0.001) TCGA-CM-6167-01 2 179593297 179593297 G A TTN Silent p.S6452S 0.20 TCGA-CM-6167-01 2 210594994 210594994 C G MAP2 Missense_Mutation p.S1786C 0.21 deleterious(0) probably_damaging(0.998) TCGA-CM-6167-01 2 210782665 210782665 G T UNC80 Missense_Mutation p.A1666S 0.09 probably_damaging(0.987) TCGA-CM-6167-01 2 219563459 219563459 G A STK36 Silent p.S1064S 0.11 TCGA-CM-6167-01 2 71891541 71891541 G A DYSF Missense_Mutation p.R1716H 0.11 tolerated(0.77) benign(0.001) TCGA-CM-6167-01 3 124732421 124732422 - GAGGAGGAGGAGGAAGAG HEG1 In_Frame_Ins p.S667_S668insLFLLLL 0.11 TCGA-CM-6167-01 3 33194994 33194994 G A SUSD5 Missense_Mutation p.T377I 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6167-01 3 36779072 36779072 C T DCLK3 Missense_Mutation p.R360Q 0.26 deleterious(0.03) possibly_damaging(0.467) TCGA-CM-6167-01 3 57327777 57327777 A T ASB14 5'Flank 0.16 TCGA-CM-6167-01 4 140640558 140640558 T C MAML3 Silent p.A1112A 0.11 TCGA-CM-6167-01 4 159753114 159753114 G A FNIP2 Splice_Site p.X161_splice 0.14 TCGA-CM-6167-01 4 183549878 183549878 C T TENM3 Missense_Mutation p.S275F 0.16 deleterious(0) possibly_damaging(0.788) TCGA-CM-6167-01 4 25127376 25127376 C T SEPSECS Missense_Mutation p.R384H 0.15 tolerated(0.19) benign(0) TCGA-CM-6167-01 4 95220598 95220598 G A HPGDS 3'UTR 0.06 TCGA-CM-6167-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.22 TCGA-CM-6167-01 5 112850972 112850972 T C YTHDC2 Missense_Mutation p.M64T 0.21 deleterious(0.02) benign(0.038) TCGA-CM-6167-01 5 140553439 140553439 C T PCDHB7 Silent p.N341N 0.19 TCGA-CM-6167-01 5 140723917 140723917 T A PCDHGA3 Missense_Mutation p.I106N 0.08 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-CM-6167-01 5 140789113 140789113 C T PCDHGB6 Silent p.N448N 0.16 TCGA-CM-6167-01 5 150028806 150028806 G A SYNPO Silent p.E567E 0.12 TCGA-CM-6167-01 5 168222516 168222516 G A SLIT3 Nonsense_Mutation p.R335* 0.19 TCGA-CM-6167-01 5 173036349 173036349 G A BOD1 Nonsense_Mutation p.R151* 0.06 TCGA-CM-6167-01 5 179564962 179564962 G T RASGEF1C Missense_Mutation p.Q31K 0.17 tolerated(0.93) benign(0.063) TCGA-CM-6167-01 5 52194154 52194154 G A ITGA1 Missense_Mutation p.R417Q 0.20 tolerated(0.65) benign(0) TCGA-CM-6167-01 6 133055792 133055793 - A VNN3 Frame_Shift_Ins p.A14Cfs*19 0.10 TCGA-CM-6167-01 6 13977722 13977722 G A RNF182 Silent p.T124T 0.11 TCGA-CM-6167-01 6 150004217 150004217 G A LATS1 Missense_Mutation p.R670W 0.05 deleterious(0) probably_damaging(0.987) TCGA-CM-6167-01 6 27100940 27100940 A G HIST1H2AG Silent p.R30R 0.13 TCGA-CM-6167-01 6 32029321 32029321 C T TNXB Missense_Mutation p.D2449N 0.09 probably_damaging(0.987) TCGA-CM-6167-01 6 43022180 43022180 A T MRPL2 Silent p.V250V 0.10 TCGA-CM-6167-01 6 7373306 7373306 C A CAGE1 Missense_Mutation p.K582N 0.10 deleterious(0) probably_damaging(0.978) TCGA-CM-6167-01 6 78172422 78172422 T C HTR1B Silent p.V233V 0.27 TCGA-CM-6167-01 7 141763387 141763387 G A MGAM Splice_Site p.X1449_splice 0.15 TCGA-CM-6167-01 7 151835922 151835922 T - KMT2C Frame_Shift_Del p.I4868Lfs*37 0.25 TCGA-CM-6167-01 7 1732981 1732981 C T AC074389.6 Missense_Mutation p.R184H 0.17 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-CM-6167-01 7 48315319 48315319 C T ABCA13 Missense_Mutation p.T2019M 0.11 benign(0.075) TCGA-CM-6167-01 7 55221733 55221733 G C EGFR Silent p.T259T 0.25 TCGA-CM-6167-01 8 79645941 79645941 A C IL7 3'UTR 0.20 TCGA-CM-6167-01 9 139391907 139391907 C T NOTCH1 Missense_Mutation p.R2095H 0.26 deleterious(0) probably_damaging(0.953) TCGA-CM-6167-01 9 140400468 140400468 C T PNPLA7 Silent p.S431S 0.10 TCGA-CM-6167-01 9 33264992 33264992 G T CHMP5 5'UTR 0.17 TCGA-CM-6167-01 9 434883 434883 A G DOCK8 Missense_Mutation p.M1663V 0.25 deleterious(0.03) benign(0.04) TCGA-CM-6167-01 9 98678017 98678017 G T ERCC6L2 Nonsense_Mutation p.E297* 0.09 TCGA-CM-6167-01 X 104463701 104463701 C T TEX13A Missense_Mutation p.R392Q 0.18 tolerated(0.26) possibly_damaging(0.857) TCGA-CM-6167-01 X 107939687 107939687 C T COL4A5 3'UTR 0.22 TCGA-CM-6167-01 X 11157236 11157236 G A ARHGAP6 Missense_Mutation p.A891V 0.20 tolerated_low_confidence(0.19) benign(0.002) TCGA-CM-6167-01 X 140969193 140969193 C T MAGEC3 Missense_Mutation p.P174S 0.19 tolerated(0.18) possibly_damaging(0.641) TCGA-CM-6167-01 X 147014001 147014001 A T FMR1 Missense_Mutation p.M230L 0.13 tolerated(0.06) possibly_damaging(0.75) TCGA-CM-6167-01 X 63411366 63411366 G A AMER1 Nonsense_Mutation p.R601* 0.27 TCGA-CM-6167-01 X 83128579 83128580 - A CYLC1 Frame_Shift_Ins p.N291Efs*7 0.18 TCGA-CM-6168-01 10 11911429 11911429 A G PROSER2 Intron 0.19 TCGA-CM-6168-01 10 129178372 129178372 A C DOCK1 Missense_Mutation p.E1213D 0.06 deleterious(0.05) benign(0.14) TCGA-CM-6168-01 10 14879907 14879907 G T CDNF Nonsense_Mutation p.C13* 0.09 TCGA-CM-6168-01 10 20534396 20534396 C T PLXDC2 Missense_Mutation p.H479Y 0.21 tolerated(0.49) benign(0.333) TCGA-CM-6168-01 10 23287285 23287285 G A ARMC3 Missense_Mutation p.A462T 0.12 tolerated(0.5) benign(0.001) TCGA-CM-6168-01 10 50820072 50820072 C T SLC18A3 Missense_Mutation p.S429L 0.17 deleterious(0.01) possibly_damaging(0.855) TCGA-CM-6168-01 10 55839178 55839178 C - PCDH15 Frame_Shift_Del p.I669Ffs*2 0.11 TCGA-CM-6168-01 10 62547923 62547923 A T CDK1 Missense_Mutation p.I142F 0.05 deleterious(0) probably_damaging(0.942) TCGA-CM-6168-01 10 75528789 75528789 G C SEC24C Missense_Mutation p.G768A 0.17 deleterious(0.05) probably_damaging(1) TCGA-CM-6168-01 10 86130917 86130917 A T CCSER2 Missense_Mutation p.N37Y 0.16 deleterious(0.02) possibly_damaging(0.724) TCGA-CM-6168-01 10 97698180 97698180 C T C10orf131 3'UTR 0.12 TCGA-CM-6168-01 10 98807471 98807471 C T SLIT1 Missense_Mutation p.R537H 0.22 tolerated(1) benign(0.01) TCGA-CM-6168-01 11 10790027 10790027 G A CTR9 Missense_Mutation p.A700T 0.22 deleterious(0) possibly_damaging(0.608) TCGA-CM-6168-01 11 1161293 1161293 G A MUC5AC Missense_Mutation p.V490M 0.17 deleterious(0.02) probably_damaging(0.978) TCGA-CM-6168-01 11 118968684 118968684 G A DPAGT1 Silent p.G266G 0.14 TCGA-CM-6168-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.22 TCGA-CM-6168-01 11 123994162 123994162 G A VWA5A Splice_Site p.X340_splice 0.11 TCGA-CM-6168-01 11 1769071 1769071 C T RP11-295K3.1 Silent p.A321A 0.19 TCGA-CM-6168-01 11 20424474 20424474 C T PRMT3 Nonsense_Mutation p.R239* 0.15 TCGA-CM-6168-01 11 31327887 31327887 C T DCDC1 Silent p.Q161Q 0.17 TCGA-CM-6168-01 11 4510284 4510284 C T OR52K1 Nonsense_Mutation p.Q52* 0.21 TCGA-CM-6168-01 11 47758230 47758230 C G FNBP4 Missense_Mutation p.E507Q 0.16 deleterious(0.01) possibly_damaging(0.701) TCGA-CM-6168-01 11 66436215 66436215 G A RBM4B Silent p.Y320Y 0.16 TCGA-CM-6168-01 11 68030376 68030376 G A C11orf24 Silent p.V29V 0.08 TCGA-CM-6168-01 11 8118889 8118889 C T TUB Missense_Mutation p.R323C 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-CM-6168-01 11 94554843 94554843 C T AMOTL1 Silent p.A423A 0.21 TCGA-CM-6168-01 12 105459074 105459074 G T ALDH1L2 Missense_Mutation p.P253T 0.07 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CM-6168-01 12 123297881 123297881 C T CCDC62 Missense_Mutation p.A639V 0.12 deleterious(0) probably_damaging(0.988) TCGA-CM-6168-01 12 130387900 130387900 C T TMEM132D 5'UTR 0.09 TCGA-CM-6168-01 12 15677760 15677760 C T PTPRO Missense_Mutation p.P635L 0.08 deleterious(0) probably_damaging(1) TCGA-CM-6168-01 12 22015909 22015910 - A ABCC9 Frame_Shift_Ins p.G773Wfs*5 0.10 TCGA-CM-6168-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.20 deleterious(0.04) possibly_damaging(0.506) TCGA-CM-6168-01 12 4922168 4922169 - T KCNA6 3'UTR 0.08 TCGA-CM-6168-01 12 49434078 49434078 C A KMT2D Missense_Mutation p.G2492V 0.19 probably_damaging(0.991) TCGA-CM-6168-01 12 49690730 49690730 A G PRPH Missense_Mutation p.E254G 0.15 deleterious(0) possibly_damaging(0.808) TCGA-CM-6168-01 12 53823264 53823264 G A AMHR2 Missense_Mutation p.R332Q 0.24 deleterious(0) possibly_damaging(0.553) TCGA-CM-6168-01 12 54676242 54676242 G C HNRNPA1 Missense_Mutation p.E185D 0.17 deleterious(0.02) benign(0.179) TCGA-CM-6168-01 12 54922031 54922031 G A NCKAP1L Nonsense_Mutation p.W792* 0.17 TCGA-CM-6168-01 12 57109938 57109938 T C NACA Silent p.A639A 0.09 TCGA-CM-6168-01 12 62954552 62954552 A G MON2 Missense_Mutation p.T1231A 0.19 tolerated(0.72) benign(0.009) TCGA-CM-6168-01 12 64057548 64057548 C T DPY19L2 Missense_Mutation p.R147H 0.17 deleterious(0) probably_damaging(0.997) TCGA-CM-6168-01 12 6424253 6424253 G A PLEKHG6 Missense_Mutation p.R126Q 0.19 tolerated(0.15) benign(0.432) TCGA-CM-6168-01 12 65857046 65857046 G A MSRB3 Missense_Mutation p.A175T 0.17 tolerated(0.28) benign(0.002) TCGA-CM-6168-01 12 6936234 6936234 G A GPR162 Silent p.E544E 0.15 TCGA-CM-6168-01 12 75874820 75874820 G T GLIPR1 Missense_Mutation p.D54Y 0.14 deleterious(0) probably_damaging(0.975) TCGA-CM-6168-01 12 8023516 8023516 G A SLC2A14 5'UTR 0.23 TCGA-CM-6168-01 13 111932645 111932645 A G ARHGEF7 Silent p.T532T 0.09 TCGA-CM-6168-01 13 23908737 23908737 A G SACS Missense_Mutation p.V3093A 0.23 probably_damaging(0.978) TCGA-CM-6168-01 13 26788842 26788842 G A RNF6 Nonsense_Mutation p.R393* 0.10 TCGA-CM-6168-01 13 38137313 38137313 C G POSTN 3'UTR 0.26 TCGA-CM-6168-01 13 39262698 39262698 G A FREM2 Missense_Mutation p.R406H 0.23 tolerated(0.1) benign(0.31) TCGA-CM-6168-01 13 50235205 50235205 C T EBPL Missense_Mutation p.G174S 0.10 tolerated(0.28) possibly_damaging(0.632) TCGA-CM-6168-01 14 107078375 107078375 C T IGHV1-58 Missense_Mutation p.A117T 0.09 benign(0.022) TCGA-CM-6168-01 14 20784495 20784495 C T CCNB1IP1 Missense_Mutation p.R63H 0.17 deleterious(0.01) possibly_damaging(0.457) TCGA-CM-6168-01 14 36219734 36219734 G T RALGAPA1 Missense_Mutation p.P322H 0.07 tolerated(0.06) possibly_damaging(0.879) TCGA-CM-6168-01 15 102358469 102358469 T C OR4F15 Missense_Mutation p.L27P 0.10 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CM-6168-01 15 64410999 64410999 G T SNX1 Nonsense_Mutation p.E138* 0.14 TCGA-CM-6168-01 15 65932007 65932007 G A SLC24A1 Silent p.Q673Q 0.10 TCGA-CM-6168-01 15 72154861 72154861 T C MYO9A Missense_Mutation p.D2024G 0.10 deleterious(0.01) possibly_damaging(0.761) TCGA-CM-6168-01 15 73617366 73617366 C T HCN4 Silent p.Q636Q 0.14 TCGA-CM-6168-01 15 75501097 75501097 G A C15orf39 Missense_Mutation p.R903H 0.21 deleterious(0) probably_damaging(0.974) TCGA-CM-6168-01 15 76222308 76222308 C T FBXO22 Nonsense_Mutation p.Q238* 0.14 TCGA-CM-6168-01 15 90892389 90892389 C T GABARAPL3 Missense_Mutation p.R14Q 0.15 deleterious(0) probably_damaging(0.942) TCGA-CM-6168-01 16 1884170 1884170 T - MEIOB 3'UTR 0.12 TCGA-CM-6168-01 16 22155589 22155589 A - VWA3A Frame_Shift_Del p.K873Nfs*2 0.13 TCGA-CM-6168-01 16 3433789 3433789 T G ZSCAN32 Intron 0.12 TCGA-CM-6168-01 16 3832829 3832829 C T CREBBP Missense_Mutation p.D477N 0.20 probably_damaging(0.996) TCGA-CM-6168-01 16 4802758 4802758 C T ZNF500 Silent p.K354K 0.11 TCGA-CM-6168-01 16 48234263 48234263 C T ABCC11 Missense_Mutation p.G669E 0.10 deleterious(0.01) probably_damaging(1) TCGA-CM-6168-01 16 50245339 50245339 G T PAPD5 Missense_Mutation p.E233D 0.14 tolerated(0.82) benign(0.039) TCGA-CM-6168-01 16 5083893 5083893 C T NAGPA Nonsense_Mutation p.W8* 0.27 TCGA-CM-6168-01 16 67860690 67860690 C G TSNAXIP1 Missense_Mutation p.I445M 0.17 tolerated(0.43) possibly_damaging(0.812) TCGA-CM-6168-01 16 75690320 75690320 A - TERF2IP Frame_Shift_Del p.N339Ifs*12 0.14 TCGA-CM-6168-01 16 88782077 88782077 G A PIEZO1 Missense_Mutation p.A2501V 0.12 deleterious(0) possibly_damaging(0.845) TCGA-CM-6168-01 17 19458968 19458968 T C SLC47A1 Missense_Mutation p.I235T 0.12 deleterious(0) possibly_damaging(0.611) TCGA-CM-6168-01 17 26091042 26091042 C T NOS2 Missense_Mutation p.E853K 0.18 tolerated(0.14) benign(0.021) TCGA-CM-6168-01 17 35564658 35564658 C T ACACA Missense_Mutation p.S1255N 0.07 deleterious(0.04) possibly_damaging(0.763) TCGA-CM-6168-01 17 37113434 37113434 G A FBXO47 Missense_Mutation p.T142I 0.06 deleterious(0.01) benign(0.002) TCGA-CM-6168-01 17 38953471 38953471 C T KRT28 Silent p.P251P 0.21 TCGA-CM-6168-01 17 57644022 57644022 T C DHX40 Silent p.T49T 0.13 TCGA-CM-6168-01 17 65147270 65147270 C T HELZ Missense_Mutation p.A750T 0.11 tolerated(1) benign(0.018) TCGA-CM-6168-01 17 68175228 68175228 T C KCNJ2 3'UTR 0.07 TCGA-CM-6168-01 17 7306491 7306491 C T TMEM256 Missense_Mutation p.C79Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-CM-6168-01 17 76803062 76803062 T - USP36 Frame_Shift_Del p.K688Nfs*35 0.23 TCGA-CM-6168-01 17 79174177 79174177 G A AZI1 Silent p.R286R 0.10 TCGA-CM-6168-01 18 18975373 18975373 G A GREB1L Missense_Mutation p.R128H 0.19 deleterious(0) probably_damaging(0.999) TCGA-CM-6168-01 18 29867386 29867386 C T GAREM Missense_Mutation p.G392S 0.14 tolerated(0.1) possibly_damaging(0.831) TCGA-CM-6168-01 18 32890466 32890466 A G ZNF271 RNA 0.07 TCGA-CM-6168-01 18 34846542 34846542 C T CELF4 Silent p.A373A 0.15 TCGA-CM-6168-01 18 3814169 3814169 T G DLGAP1 Missense_Mutation p.E354D 0.16 tolerated(0.64) benign(0.002) TCGA-CM-6168-01 18 45368211 45368211 G T SMAD2 Nonsense_Mutation p.S464* 0.18 TCGA-CM-6168-01 18 54448837 54448837 T C WDR7 Missense_Mutation p.I1047T 0.11 deleterious(0) benign(0.357) TCGA-CM-6168-01 18 56246504 56246504 C T ALPK2 Missense_Mutation p.E502K 0.23 tolerated(0.08) possibly_damaging(0.504) TCGA-CM-6168-01 18 77960761 77960761 C G PARD6G Missense_Mutation p.E43Q 0.22 tolerated(0.33) possibly_damaging(0.641) TCGA-CM-6168-01 19 15298757 15298757 G A NOTCH3 Missense_Mutation p.T514M 0.13 deleterious(0) probably_damaging(1) TCGA-CM-6168-01 19 17394727 17394727 G A ANKLE1 Missense_Mutation p.R385K 0.22 tolerated(0.09) benign(0.168) TCGA-CM-6168-01 19 18245498 18245498 G T MAST3 Missense_Mutation p.A532S 0.18 deleterious(0.03) benign(0.025) TCGA-CM-6168-01 19 2877844 2877844 C T ZNF556 Silent p.Y296Y 0.12 TCGA-CM-6168-01 19 36728315 36728315 C T ZNF146 3'UTR 0.17 TCGA-CM-6168-01 19 39663674 39663674 G A PAK4 Silent p.P107P 0.21 TCGA-CM-6168-01 19 40900340 40900340 G A PRX Missense_Mutation p.R1307W 0.30 deleterious(0) possibly_damaging(0.835) TCGA-CM-6168-01 19 41135353 41135353 G A LTBP4 Silent p.A1590A 0.09 TCGA-CM-6168-01 19 4324596 4324596 A G STAP2 Missense_Mutation p.S381P 0.23 tolerated_low_confidence(1) benign(0.068) TCGA-CM-6168-01 19 47425250 47425250 C T ARHGAP35 Silent p.S1106S 0.21 TCGA-CM-6168-01 19 49004662 49004662 C T LMTK3 Splice_Site p.X323_splice 0.12 TCGA-CM-6168-01 19 49494610 49494610 G - GYS1 Frame_Shift_Del p.T84Pfs*4 0.10 TCGA-CM-6168-01 19 50156577 50156577 G A SCAF1 Silent p.P977P 0.45 TCGA-CM-6168-01 19 50213718 50213718 G A CPT1C Missense_Mutation p.A570T 0.10 tolerated(0.05) benign(0.013) TCGA-CM-6168-01 19 51411737 51411737 C T KLK4 Missense_Mutation p.V164M 0.15 tolerated(0.14) possibly_damaging(0.636) TCGA-CM-6168-01 19 52794403 52794403 G C ZNF766 Missense_Mutation p.W453C 0.20 tolerated(0.16) benign(0.004) TCGA-CM-6168-01 19 53645198 53645198 C A ZNF347 Missense_Mutation p.G296C 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-CM-6168-01 19 54720953 54720953 C - LILRB3 3'UTR 0.13 TCGA-CM-6168-01 19 5778532 5778532 C T CATSPERD Missense_Mutation p.R748C 0.14 tolerated(0.22) benign(0.002) TCGA-CM-6168-01 19 58090138 58090138 C T ZNF416 5'UTR 0.19 TCGA-CM-6168-01 19 8841802 8841802 C T OR2Z1 Missense_Mutation p.R138C 0.20 deleterious(0.03) benign(0.01) TCGA-CM-6168-01 19 9066270 9066270 T C MUC16 Missense_Mutation p.H7059R 0.11 unknown(0) TCGA-CM-6168-01 1 117122347 117122347 T - IGSF3 Frame_Shift_Del p.R1021Gfs*34 0.13 TCGA-CM-6168-01 1 13942443 13942443 A - PDPN 3'UTR 0.14 TCGA-CM-6168-01 1 152882769 152882769 C A IVL Missense_Mutation p.L166I 0.21 tolerated(0.11) unknown(0) TCGA-CM-6168-01 1 155717549 155717549 C A GON4L 3'Flank 0.05 TCGA-CM-6168-01 1 157659610 157659610 G A FCRL3 Silent p.Y596Y 0.15 TCGA-CM-6168-01 1 15812542 15812542 G A CELA2B Splice_Site p.X213_splice 0.13 TCGA-CM-6168-01 1 17263309 17263309 G A CROCC Silent p.E378E 0.25 TCGA-CM-6168-01 1 181480604 181480604 G A CACNA1E Missense_Mutation p.R157H 0.19 deleterious(0) possibly_damaging(0.812) TCGA-CM-6168-01 1 196762648 196762648 G T CFHR3 3'UTR 0.09 TCGA-CM-6168-01 1 201031163 201031163 G A CACNA1S Missense_Mutation p.R988C 0.17 deleterious(0) probably_damaging(1) TCGA-CM-6168-01 1 201336918 201336918 C T TNNT2 Silent p.E50E 0.10 TCGA-CM-6168-01 1 202127476 202127476 G T PTPN7 Intron 0.20 TCGA-CM-6168-01 1 223177475 223177475 G A DISP1 Silent p.P912P 0.17 TCGA-CM-6168-01 1 228346981 228346981 G C GJC2 3'UTR 0.12 TCGA-CM-6168-01 1 231299732 231299732 G A TRIM67 Silent p.P339P 0.10 TCGA-CM-6168-01 1 233394604 233394604 G A PCNXL2 Missense_Mutation p.T335I 0.19 tolerated_low_confidence(0.2) benign(0.002) TCGA-CM-6168-01 1 240371656 240371656 G A FMN2 Missense_Mutation p.V1182M 0.09 unknown(0) TCGA-CM-6168-01 1 25569159 25569159 G A C1orf63 Missense_Mutation p.A265V 0.22 tolerated(0.29) benign(0.348) TCGA-CM-6168-01 1 27676929 27676929 G A SYTL1 Missense_Mutation p.A320T 0.12 tolerated(0.35) benign(0.026) TCGA-CM-6168-01 1 32256633 32256633 G T SPOCD1 Silent p.G1074G 0.16 TCGA-CM-6168-01 1 33837982 33837982 C T PHC2 Missense_Mutation p.A81T 0.28 deleterious(0) probably_damaging(0.999) TCGA-CM-6168-01 1 40033515 40033515 C - PABPC4 Frame_Shift_Del p.V294* 0.12 TCGA-CM-6168-01 1 40124893 40124893 C T NT5C1A Missense_Mutation p.G336E 0.18 deleterious(0.03) possibly_damaging(0.461) TCGA-CM-6168-01 1 47883358 47883358 C T FOXE3 3'UTR 0.06 TCGA-CM-6168-01 1 65268694 65268694 A G RAVER2 Missense_Mutation p.M381V 0.17 tolerated(0.71) benign(0.006) TCGA-CM-6168-01 1 94939383 94939383 A G ABCD3 Missense_Mutation p.M133V 0.07 tolerated(0.05) benign(0.057) TCGA-CM-6168-01 20 35315900 35315900 T A NDRG3 Silent p.P105P 0.12 TCGA-CM-6168-01 20 54940256 54940256 C T FAM210B Silent p.G100G 0.10 TCGA-CM-6168-01 20 60882685 60882685 A G ADRM1 Silent p.S219S 0.14 TCGA-CM-6168-01 20 61917373 61917373 G A ARFGAP1 Intron 0.10 TCGA-CM-6168-01 20 62904719 62904719 C A PCMTD2 Silent p.R284R 0.12 TCGA-CM-6168-01 21 38115763 38115763 C T SIM2 Silent p.T358T 0.27 TCGA-CM-6168-01 21 41151173 41151173 G A IGSF5 Missense_Mutation p.R292H 0.16 tolerated(0.57) benign(0.049) TCGA-CM-6168-01 21 46021528 46021528 C G KRTAP10-7 Missense_Mutation p.P336R 0.17 deleterious(0) unknown(0) TCGA-CM-6168-01 22 24640602 24640602 C T GGT5 Missense_Mutation p.R31Q 0.15 tolerated(0.26) benign(0.011) TCGA-CM-6168-01 22 25275432 25275433 - C SGSM1 Frame_Shift_Ins p.L535Pfs*6 0.11 TCGA-CM-6168-01 22 29656823 29656823 G A RHBDD3 Missense_Mutation p.P188L 0.11 tolerated(1) benign(0.001) TCGA-CM-6168-01 22 33673201 33673201 C T LARGE Missense_Mutation p.A640T 0.12 tolerated(0.22) probably_damaging(1) TCGA-CM-6168-01 22 36537357 36537358 - C APOL3 Frame_Shift_Ins p.A367Gfs*7 0.17 TCGA-CM-6168-01 22 39146276 39146276 G A SUN2 Silent p.A179A 0.35 TCGA-CM-6168-01 22 40037144 40037144 T C CACNA1I Missense_Mutation p.I338T 0.18 deleterious(0) probably_damaging(0.945) TCGA-CM-6168-01 22 42793958 42793958 C T NFAM1 Missense_Mutation p.R190Q 0.14 tolerated(1) benign(0.002) TCGA-CM-6168-01 22 43634927 43634927 C T SCUBE1 Missense_Mutation p.R254Q 0.14 deleterious(0.01) possibly_damaging(0.746) TCGA-CM-6168-01 2 101874416 101874416 C T CNOT11 Silent p.A226A 0.19 TCGA-CM-6168-01 2 1271164 1271164 C T SNTG2 Nonsense_Mutation p.Q369* 0.10 TCGA-CM-6168-01 2 152482051 152482051 A G NEB Silent p.S3483S 0.09 TCGA-CM-6168-01 2 15432781 15432781 T C NBAS Missense_Mutation p.N1636S 0.08 tolerated(0.2) benign(0.024) TCGA-CM-6168-01 2 157182438 157182438 C T NR4A2 Missense_Mutation p.V539M 0.07 tolerated(0.21) possibly_damaging(0.897) TCGA-CM-6168-01 2 160087238 160087238 T C TANC1 Silent p.T1767T 0.13 TCGA-CM-6168-01 2 167134664 167134664 G A SCN9A Nonsense_Mutation p.R824* 0.10 TCGA-CM-6168-01 2 176794611 176794611 A - KIAA1715 3'UTR 0.10 TCGA-CM-6168-01 2 177017489 177017489 G A HOXD4 Missense_Mutation p.R196H 0.20 deleterious(0) probably_damaging(1) TCGA-CM-6168-01 2 179587502 179587502 T C TTN Missense_Mutation p.N7375S 0.20 TCGA-CM-6168-01 2 190728713 190728713 T C PMS1 Missense_Mutation p.F701L 0.13 tolerated(0.14) probably_damaging(0.915) TCGA-CM-6168-01 2 191065706 191065706 G C C2orf88 3'UTR 0.09 TCGA-CM-6168-01 2 202900525 202900525 G A FZD7 Silent p.A385A 0.10 TCGA-CM-6168-01 2 207825598 207825598 G A CPO Missense_Mutation p.R169H 0.18 tolerated(0.11) benign(0.258) TCGA-CM-6168-01 2 21230679 21230679 G T APOB Missense_Mutation p.H3021N 0.16 probably_damaging(0.98) TCGA-CM-6168-01 2 27430161 27430161 C T SLC5A6 Missense_Mutation p.V120I 0.08 tolerated(0.17) benign(0.03) TCGA-CM-6168-01 2 39187363 39187363 C G AC019171.1 Missense_Mutation p.E41Q 0.22 possibly_damaging(0.617) TCGA-CM-6168-01 2 54856598 54856598 A G SPTBN1 Missense_Mutation p.E776G 0.09 deleterious(0) probably_damaging(0.991) TCGA-CM-6168-01 2 5836490 5836490 G A SOX11 3'UTR 0.17 TCGA-CM-6168-01 2 69098343 69098343 C T BMP10 Missense_Mutation p.D50N 0.16 tolerated(0.27) benign(0.227) TCGA-CM-6168-01 2 73675199 73675199 T C ALMS1 Silent p.L514L 0.06 TCGA-CM-6168-01 2 74684593 74684593 C T INO80B Missense_Mutation p.L225F 0.25 tolerated(0.09) probably_damaging(0.995) TCGA-CM-6168-01 2 74734238 74734238 G A PCGF1 Missense_Mutation p.H44Y 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-CM-6168-01 2 97530602 97530602 C T SEMA4C Missense_Mutation p.A268T 0.15 tolerated(0.44) probably_damaging(0.919) TCGA-CM-6168-01 3 109047885 109047885 C A DPPA4 Missense_Mutation p.G244C 0.22 deleterious(0) probably_damaging(0.997) TCGA-CM-6168-01 3 113379060 113379060 G T KIAA2018 Missense_Mutation p.P490Q 0.06 benign(0.005) TCGA-CM-6168-01 3 122002662 122002662 G - CASR Frame_Shift_Del p.V631Cfs*6 0.13 TCGA-CM-6168-01 3 130189775 130189775 C A COL6A5 Missense_Mutation p.P2513H 0.09 deleterious(0) probably_damaging(0.94) TCGA-CM-6168-01 3 140281018 140281018 T C CLSTN2 Silent p.L694L 0.17 TCGA-CM-6168-01 3 151164557 151164557 C A IGSF10 Missense_Mutation p.R1071M 0.08 tolerated(0.05) benign(0.225) TCGA-CM-6168-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-CM-6168-01 3 179131385 179131385 C T GNB4 Missense_Mutation p.E172K 0.19 deleterious(0.02) benign(0.342) TCGA-CM-6168-01 3 184099054 184099054 G A CHRD Missense_Mutation p.G95D 0.12 deleterious(0) possibly_damaging(0.661) TCGA-CM-6168-01 3 195295774 195295774 C T APOD Silent p.S189S 0.13 TCGA-CM-6168-01 3 24164507 24164507 C G THRB Missense_Mutation p.W418C 0.10 deleterious(0) probably_damaging(0.992) TCGA-CM-6168-01 3 32569984 32569984 C A DYNC1LI1 Silent p.G472G 0.07 TCGA-CM-6168-01 3 46016733 46016733 G A FYCO1 Silent p.T131T 0.19 TCGA-CM-6168-01 3 47748009 47748009 A G SMARCC1 Silent p.S310S 0.08 TCGA-CM-6168-01 3 77684144 77684144 G A ROBO2 Missense_Mutation p.R1311Q 0.06 tolerated_low_confidence(0.38) benign(0.238) TCGA-CM-6168-01 3 93605220 93605220 G T PROS1 Missense_Mutation p.A428E 0.17 deleterious(0) probably_damaging(0.982) TCGA-CM-6168-01 4 103611863 103611863 C T MANBA Missense_Mutation p.V247I 0.10 tolerated(0.34) benign(0.005) TCGA-CM-6168-01 4 138450981 138450981 A G PCDH18 Silent p.I754I 0.16 TCGA-CM-6168-01 4 151749556 151749556 A G LRBA Silent p.N1649N 0.19 TCGA-CM-6168-01 4 156835522 156835522 G A TDO2 Silent p.Q258Q 0.20 TCGA-CM-6168-01 4 170618568 170618568 C T CLCN3 Missense_Mutation p.R416C 0.05 deleterious(0) probably_damaging(0.996) TCGA-CM-6168-01 4 177058734 177058734 A G WDR17 Missense_Mutation p.K468R 0.11 tolerated(0.26) benign(0.005) TCGA-CM-6168-01 4 184605098 184605098 C G TRAPPC11 Intron 0.19 TCGA-CM-6168-01 4 185593469 185593469 G A PRIMPOL Missense_Mutation p.M233I 0.11 benign(0.004) TCGA-CM-6168-01 4 24550530 24550530 C T DHX15 Missense_Mutation p.R399H 0.16 deleterious(0) probably_damaging(0.96) TCGA-CM-6168-01 4 68930471 68930471 T A TMPRSS11F Missense_Mutation p.D316V 0.23 deleterious(0) possibly_damaging(0.786) TCGA-CM-6168-01 4 69693265 69693265 T C UGT2B10 Missense_Mutation p.S436P 0.19 deleterious(0.02) possibly_damaging(0.758) TCGA-CM-6168-01 4 96069948 96069948 C T BMPR1B Missense_Mutation p.R406C 0.08 deleterious(0) probably_damaging(1) TCGA-CM-6168-01 4 99064301 99064301 T C STPG2 Translation_Start_Site p.M1? 0.14 deleterious(0.02) benign(0.055) TCGA-CM-6168-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.18 TCGA-CM-6168-01 5 112175687 112175687 G T APC Nonsense_Mutation p.G1466* 0.19 TCGA-CM-6168-01 5 113698898 113698898 C T KCNN2 Silent p.G142G 0.10 TCGA-CM-6168-01 5 140214629 140214629 G C PCDHA7 Missense_Mutation p.E221Q 0.13 deleterious_low_confidence(0.03) benign(0.392) TCGA-CM-6168-01 5 140480754 140480754 C T PCDHB3 Missense_Mutation p.P174L 0.11 deleterious_low_confidence(0.03) benign(0.058) TCGA-CM-6168-01 5 140517266 140517266 C T PCDHB5 Silent p.Y750Y 0.10 TCGA-CM-6168-01 5 140531492 140531492 G A PCDHB6 Missense_Mutation p.A552T 0.28 tolerated(0.41) benign(0.028) TCGA-CM-6168-01 5 140720146 140720146 C A PCDHGA2 Missense_Mutation p.D536E 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-6168-01 5 140730022 140730022 G T PCDHGB1 Silent p.R65R 0.15 TCGA-CM-6168-01 5 140798972 140798972 G A PCDHGB7 Missense_Mutation p.A516T 0.18 deleterious(0.02) probably_damaging(0.96) TCGA-CM-6168-01 5 147040667 147040667 C T JAKMIP2 Silent p.A157A 0.17 TCGA-CM-6168-01 5 150030343 150030344 - G SYNPO 3'UTR 0.12 TCGA-CM-6168-01 5 154181680 154181680 C T LARP1 Silent p.D533D 0.07 TCGA-CM-6168-01 5 176868760 176868760 A G GRK6 Missense_Mutation p.T568A 0.09 tolerated_low_confidence(0.49) unknown(0) TCGA-CM-6168-01 5 177649539 177649539 G T PHYKPL Silent p.I248I 0.17 TCGA-CM-6168-01 5 21751989 21751989 C T CDH12 Missense_Mutation p.A748T 0.15 deleterious(0.03) probably_damaging(1) TCGA-CM-6168-01 5 3600253 3600253 C A IRX1 Silent p.P397P 0.12 TCGA-CM-6168-01 5 45303797 45303797 C T HCN1 Missense_Mutation p.V508M 0.17 tolerated(0.07) probably_damaging(0.997) TCGA-CM-6168-01 5 65016557 65016557 C A SGTB Silent p.S26S 0.10 TCGA-CM-6168-01 5 65350485 65350485 G T ERBB2IP Silent p.A1113A 0.14 TCGA-CM-6168-01 5 65350572 65350572 T C ERBB2IP Silent p.P1142P 0.09 TCGA-CM-6168-01 5 76714110 76714110 C T PDE8B Silent p.D656D 0.16 TCGA-CM-6168-01 5 7826918 7826918 C T ADCY2 Silent p.D1070D 0.09 TCGA-CM-6168-01 5 78977843 78977843 G A PAPD4 Missense_Mutation p.E447K 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CM-6168-01 6 116980088 116980088 C A ZUFSP Splice_Site p.X224_splice 0.08 TCGA-CM-6168-01 6 147109618 147109618 C T ADGB Missense_Mutation p.A1470V 0.18 tolerated(0.83) benign(0) TCGA-CM-6168-01 6 154360412 154360412 C T OPRM1 Silent p.H39H 0.21 TCGA-CM-6168-01 6 28540442 28540442 C T SCAND3 Missense_Mutation p.R1075Q 0.17 tolerated_low_confidence(0.09) benign(0.04) TCGA-CM-6168-01 6 31795692 31795692 A G HSPA1B 5'UTR 0.14 TCGA-CM-6168-01 6 31832429 31832429 G A SLC44A4 Silent p.L671L 0.17 TCGA-CM-6168-01 6 32010127 32010127 G A TNXB Missense_Mutation p.R504C 0.17 deleterious(0) probably_damaging(0.993) TCGA-CM-6168-01 6 41130819 41130819 A G TREM2 Translation_Start_Site p.M1? 0.13 deleterious(0) probably_damaging(0.996) TCGA-CM-6168-01 6 42156345 42156345 C T GUCA1B Missense_Mutation p.R111H 0.09 tolerated(0.07) benign(0.128) TCGA-CM-6168-01 6 44103069 44103069 C T TMEM63B Missense_Mutation p.R82W 0.20 deleterious(0.02) possibly_damaging(0.711) TCGA-CM-6168-01 6 46849806 46849806 G T GPR116 Silent p.G217G 0.11 TCGA-CM-6168-01 6 70854859 70854859 G T COL19A1 Missense_Mutation p.G577V 0.13 deleterious(0) probably_damaging(1) TCGA-CM-6168-01 6 73933503 73933503 A G KHDC1L Missense_Mutation p.S119P 0.11 tolerated(0.3) probably_damaging(0.986) TCGA-CM-6168-01 6 80409325 80409325 G A SH3BGRL2 3'UTR 0.19 TCGA-CM-6168-01 6 87925695 87925695 T C ZNF292 Silent p.A81A 0.21 TCGA-CM-6168-01 6 87971378 87971378 C A ZNF292 Nonsense_Mutation p.C2677* 0.10 TCGA-CM-6168-01 7 100061042 100061042 C T C7orf61 Missense_Mutation p.V111I 0.12 tolerated(0.06) benign(0.232) TCGA-CM-6168-01 7 112112339 112112339 A - IFRD1 Frame_Shift_Del p.K371Nfs*35 0.08 TCGA-CM-6168-01 7 128850838 128850838 G A SMO Missense_Mutation p.R562Q 0.12 deleterious(0.01) possibly_damaging(0.613) TCGA-CM-6168-01 7 135421860 135421860 T C FAM180A Missense_Mutation p.E55G 0.13 tolerated(0.14) benign(0.234) TCGA-CM-6168-01 7 143657966 143657966 G A OR2F1 Nonsense_Mutation p.W301* 0.10 TCGA-CM-6168-01 7 149521732 149521732 G A SSPO RNA 0.35 TCGA-CM-6168-01 7 150721101 150721101 G C ATG9B Missense_Mutation p.S137C 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.605) TCGA-CM-6168-01 7 151082248 151082248 T C WDR86 Missense_Mutation p.D263G 0.08 deleterious(0.02) benign(0.002) TCGA-CM-6168-01 7 151859306 151859306 A T KMT2C Missense_Mutation p.S3786T 0.18 benign(0.003) TCGA-CM-6168-01 7 4026822 4026822 C T SDK1 Silent p.L667L 0.05 TCGA-CM-6168-01 7 43503342 43503342 G C HECW1 Missense_Mutation p.G912A 0.20 tolerated(0.15) benign(0.242) TCGA-CM-6168-01 7 43503371 43503371 G T HECW1 Nonsense_Mutation p.E922* 0.16 TCGA-CM-6168-01 7 51092862 51092862 T - COBL Frame_Shift_Del p.R1238Gfs*4 0.13 TCGA-CM-6168-01 7 6018254 6018254 C A PMS2 Missense_Mutation p.G750C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CM-6168-01 7 64864036 64864036 G - ZNF92 Frame_Shift_Del p.E338Kfs*24 0.11 TCGA-CM-6168-01 7 70227883 70227883 C T AUTS2 Missense_Mutation p.P257L 0.14 tolerated(0.36) benign(0.178) TCGA-CM-6168-01 7 73011856 73011856 G T MLXIPL Missense_Mutation p.P420Q 0.09 tolerated(0.05) benign(0.422) TCGA-CM-6168-01 7 81372101 81372101 G A HGF Intron 0.23 TCGA-CM-6168-01 7 81662142 81662142 T C CACNA2D1 Missense_Mutation p.I372V 0.11 tolerated(0.79) possibly_damaging(0.539) TCGA-CM-6168-01 7 82784067 82784067 C T PCLO Silent p.T630T 0.10 TCGA-CM-6168-01 8 102570874 102570874 C A GRHL2 Missense_Mutation p.P171H 0.11 tolerated(0.25) benign(0.221) TCGA-CM-6168-01 8 110447459 110447459 A G PKHD1L1 Silent p.G1127G 0.08 TCGA-CM-6168-01 8 143427173 143427173 C T TSNARE1 Missense_Mutation p.V57M 0.08 tolerated_low_confidence(0.06) benign(0.021) TCGA-CM-6168-01 8 144994967 144994967 G A PLEC Nonsense_Mutation p.R3145* 0.12 TCGA-CM-6168-01 8 144995162 144995162 G A PLEC Missense_Mutation p.R3080W 0.17 probably_damaging(0.993) TCGA-CM-6168-01 8 144997424 144997424 G A PLEC Nonsense_Mutation p.Q2362* 0.10 TCGA-CM-6168-01 8 145618101 145618101 C T ADCK5 Missense_Mutation p.A544V 0.12 tolerated(0.26) benign(0.027) TCGA-CM-6168-01 8 145626433 145626433 G A CPSF1 Missense_Mutation p.R142W 0.17 deleterious(0) probably_damaging(1) TCGA-CM-6168-01 8 15531303 15531303 T C TUSC3 Silent p.R252R 0.14 TCGA-CM-6168-01 8 1581004 1581004 G A DLGAP2 Silent p.A454A 0.34 TCGA-CM-6168-01 8 25174589 25174589 C T DOCK5 Missense_Mutation p.T462M 0.13 deleterious(0) probably_damaging(0.969) TCGA-CM-6168-01 8 28186750 28186750 C G PNOC Missense_Mutation p.L26V 0.16 deleterious(0.03) possibly_damaging(0.874) TCGA-CM-6168-01 8 32505357 32505357 C A NRG1 Intron 0.10 TCGA-CM-6168-01 8 41591498 41591498 C T ANK1 Silent p.T106T 0.15 TCGA-CM-6168-01 8 67577644 67577644 C G VCPIP1 Missense_Mutation p.C517S 0.28 deleterious(0.04) benign(0.404) TCGA-CM-6168-01 8 69050726 69050726 C A PREX2 Missense_Mutation p.P1354Q 0.13 tolerated(1) benign(0) TCGA-CM-6168-01 8 69050747 69050747 T C PREX2 Missense_Mutation p.V1361A 0.13 deleterious(0.03) benign(0.089) TCGA-CM-6168-01 8 92407349 92407349 C A SLC26A7 3'Flank 0.26 TCGA-CM-6168-01 9 106862381 106862381 C G SMC2 Missense_Mutation p.S163C 0.18 deleterious(0) probably_damaging(0.972) TCGA-CM-6168-01 9 123177389 123177389 A - CDK5RAP2 Frame_Shift_Del p.L1409* 0.16 TCGA-CM-6168-01 9 123201804 123201804 G T CDK5RAP2 Missense_Mutation p.L1199M 0.12 tolerated(0.08) probably_damaging(0.964) TCGA-CM-6168-01 9 127262979 127262979 C T NR5A1 Missense_Mutation p.R87H 0.23 deleterious(0) possibly_damaging(0.818) TCGA-CM-6168-01 9 130495630 130495630 C T TOR2A Intron 0.12 TCGA-CM-6168-01 9 133996508 133996508 G T AIF1L 3'UTR 0.13 TCGA-CM-6168-01 9 136898659 136898659 G A BRD3 3'UTR 0.12 TCGA-CM-6168-01 9 20770213 20770213 G A FOCAD Silent p.E294E 0.04 TCGA-CM-6168-01 9 21367999 21367999 G A IFNA13 Missense_Mutation p.S4L 0.17 tolerated(1) benign(0) TCGA-CM-6168-01 9 21512130 21512130 G A MIR31 RNA 0.12 TCGA-CM-6168-01 9 80409441 80409441 A G GNAQ Missense_Mutation p.S225P 0.15 deleterious(0) probably_damaging(0.997) TCGA-CM-6168-01 9 90315135 90315135 C T DAPK1 Nonsense_Mutation p.R952* 0.08 TCGA-CM-6168-01 X 112048295 112048297 CTC - AMOT In_Frame_Del p.E552del 0.18 TCGA-CM-6168-01 X 119293222 119293222 G A RHOXF2 Silent p.G127G 0.05 TCGA-CM-6168-01 X 125298663 125298663 G A DCAF12L2 Silent p.D415D 0.08 TCGA-CM-6168-01 X 130217758 130217758 G A ARHGAP36 Missense_Mutation p.E124K 0.13 deleterious(0) probably_damaging(0.995) TCGA-CM-6168-01 X 134654950 134654950 C T DDX26B Silent p.S11S 0.15 TCGA-CM-6168-01 X 14550416 14550416 C T GLRA2 Silent p.L42L 0.08 TCGA-CM-6168-01 X 148586708 148586708 C T IDS 5'UTR 0.09 TCGA-CM-6168-01 X 155005296 155005296 A G SPRY3 3'UTR 0.19 TCGA-CM-6168-01 X 54282213 54282213 C T WNK3 Missense_Mutation p.R737Q 0.09 deleterious(0) benign(0.266) TCGA-CM-6168-01 X 57621917 57621917 T - ZXDB 3'UTR 0.09 TCGA-CM-6168-01 X 63411303 63411303 C A AMER1 Nonsense_Mutation p.E622* 0.15 TCGA-CM-6168-01 X 70281780 70281780 C T SNX12 Missense_Mutation p.R100Q 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-CM-6168-01 X 80369929 80369929 T - HMGN5 3'UTR 0.08 TCGA-CM-6168-01 X 91134161 91134161 C A PCDH11X Silent p.A974A 0.09 TCGA-CM-6169-01 11 121023628 121023628 G A TECTA Missense_Mutation p.V1382M 0.40 tolerated(0.23) benign(0.073) TCGA-CM-6169-01 11 123894433 123894433 G T OR10G9 Missense_Mutation p.Q238H 0.32 deleterious(0) benign(0.35) TCGA-CM-6169-01 11 35456129 35456129 G T PAMR1 Missense_Mutation p.D536E 0.34 tolerated(0.74) benign(0.024) TCGA-CM-6169-01 11 4675957 4675957 C T OR51E1 3'UTR 0.29 TCGA-CM-6169-01 11 48267294 48267294 C A OR4X2 Silent p.I213I 0.34 TCGA-CM-6169-01 11 61914230 61914231 - GCGGGAGCAGGAGCG INCENP In_Frame_Ins p.R713_R717dup 0.30 TCGA-CM-6169-01 11 66192427 66192427 G T NPAS4 Missense_Mutation p.W689L 0.30 tolerated(0.08) probably_damaging(0.995) TCGA-CM-6169-01 12 113646041 113646041 G A IQCD 5'UTR 0.38 TCGA-CM-6169-01 12 11461567 11461567 G A PRB4 Missense_Mutation p.P117L 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-CM-6169-01 12 119583373 119583373 G A SRRM4 Missense_Mutation p.R320Q 0.32 tolerated_low_confidence(0.42) benign(0.009) TCGA-CM-6169-01 12 124104149 124104149 C T DDX55 Nonsense_Mutation p.Q502* 0.43 TCGA-CM-6169-01 12 44770382 44770382 G T TMEM117 Missense_Mutation p.W258L 0.06 deleterious(0) probably_damaging(0.991) TCGA-CM-6169-01 12 50472313 50472313 C T ASIC1 Missense_Mutation p.T316M 0.25 deleterious(0) probably_damaging(0.981) TCGA-CM-6169-01 12 53227573 53227573 C T KRT79 Missense_Mutation p.D158N 0.30 deleterious(0) possibly_damaging(0.816) TCGA-CM-6169-01 12 53684767 53684767 G A ESPL1 Missense_Mutation p.R1836H 0.35 tolerated(0.09) benign(0.024) TCGA-CM-6169-01 13 114154274 114154274 T A TMCO3 Missense_Mutation p.V209D 0.48 deleterious(0.01) benign(0.439) TCGA-CM-6169-01 13 23911139 23911139 C A SACS Silent p.L2292L 0.45 TCGA-CM-6169-01 14 101200824 101200824 G A DLK1 Missense_Mutation p.R248H 0.26 tolerated(0.21) benign(0.139) TCGA-CM-6169-01 14 21167774 21167774 C T RNASE4 Missense_Mutation p.R82C 0.26 deleterious(0) possibly_damaging(0.759) TCGA-CM-6169-01 14 24113713 24113713 C T DHRS2 Silent p.C212C 0.25 TCGA-CM-6169-01 14 66953248 66953248 T A LINC00238 RNA 0.32 TCGA-CM-6169-01 14 89629053 89629053 G A FOXN3 Missense_Mutation p.T393M 0.29 tolerated(0.22) possibly_damaging(0.739) TCGA-CM-6169-01 15 48755284 48755284 C T FBN1 Missense_Mutation p.S1740N 0.38 probably_damaging(0.982) TCGA-CM-6169-01 15 62359882 62359882 G A C2CD4A Missense_Mutation p.G24S 0.22 tolerated(0.25) benign(0.11) TCGA-CM-6169-01 15 75043549 75043549 C T CYP1A2 Missense_Mutation p.T284M 0.34 deleterious(0.01) possibly_damaging(0.499) TCGA-CM-6169-01 15 75714935 75714935 T C SIN3A Intron 0.39 TCGA-CM-6169-01 15 78393477 78393477 C A SH2D7 Silent p.G294G 0.33 TCGA-CM-6169-01 16 1396027 1396027 G A BAIAP3 Missense_Mutation p.R785Q 0.30 deleterious(0.04) benign(0.31) TCGA-CM-6169-01 16 1536007 1536007 G T PTX4 Missense_Mutation p.A452D 0.46 tolerated(0.59) benign(0.17) TCGA-CM-6169-01 16 30094776 30094776 A G PPP4C Missense_Mutation p.Q122R 0.35 deleterious(0) possibly_damaging(0.837) TCGA-CM-6169-01 17 25932507 25932507 C T KSR1 Silent p.D439D 0.31 TCGA-CM-6169-01 17 39659935 39659936 TC - KRT13 Frame_Shift_Del p.E179Dfs*2 0.29 TCGA-CM-6169-01 17 39983812 39983812 T G NT5C3B Missense_Mutation p.N212H 0.24 tolerated(0.21) benign(0.012) TCGA-CM-6169-01 17 54428211 54428211 C T ANKFN1 Silent p.N94N 0.38 TCGA-CM-6169-01 17 58284458 58284458 T C USP32 Silent p.S987S 0.36 TCGA-CM-6169-01 17 72921012 72921012 C T OTOP2 Silent p.D95D 0.32 TCGA-CM-6169-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.60 TCGA-CM-6169-01 19 36321847 36321847 C T NPHS1 Missense_Mutation p.E1165K 0.30 tolerated(0.4) benign(0.002) TCGA-CM-6169-01 19 38103616 38103616 C T ZNF540 Missense_Mutation p.R479C 0.16 tolerated(0.18) possibly_damaging(0.69) TCGA-CM-6169-01 19 42383707 42383707 C T CD79A Missense_Mutation p.T161M 0.08 deleterious(0.02) possibly_damaging(0.51) TCGA-CM-6169-01 19 51169477 51169477 C T SHANK1 Missense_Mutation p.E1914K 0.65 unknown(0) TCGA-CM-6169-01 19 55284926 55284926 G A KIR2DL1 Missense_Mutation p.R71H 0.70 tolerated(1) benign(0.002) TCGA-CM-6169-01 19 58868370 58868370 G A ZNF497 Missense_Mutation p.T211M 0.29 deleterious(0.02) probably_damaging(0.935) TCGA-CM-6169-01 19 6913826 6913826 C T EMR1 Missense_Mutation p.R429W 0.41 deleterious(0.01) possibly_damaging(0.776) TCGA-CM-6169-01 19 7677733 7677733 G A CAMSAP3 Missense_Mutation p.R812Q 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-CM-6169-01 1 114680259 114680259 C T SYT6 Missense_Mutation p.R225H 0.48 deleterious(0) probably_damaging(0.996) TCGA-CM-6169-01 1 145549283 145549283 C A ANKRD35 5'UTR 0.38 TCGA-CM-6169-01 1 148346843 148346843 A G NBPF20 Intron 0.13 TCGA-CM-6169-01 1 153908585 153908585 C T DENND4B Missense_Mutation p.R840H 0.38 deleterious(0.03) benign(0.196) TCGA-CM-6169-01 1 156351228 156351228 A G RHBG Missense_Mutation p.Y255C 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-CM-6169-01 1 17081462 17081462 C T MST1L RNA 0.29 TCGA-CM-6169-01 1 181690992 181690992 G T CACNA1E Silent p.V685V 0.37 TCGA-CM-6169-01 1 196448359 196448359 C - KCNT2 Frame_Shift_Del p.A112Hfs*2 0.17 TCGA-CM-6169-01 1 215408465 215408465 G T KCNK2 Missense_Mutation p.A420S 0.31 tolerated_low_confidence(0.55) benign(0.018) TCGA-CM-6169-01 1 228560473 228560473 G T OBSCN Missense_Mutation p.A8289S 0.42 benign(0.266) TCGA-CM-6169-01 1 240255858 240255858 C A FMN2 Missense_Mutation p.A150D 0.17 unknown(0) TCGA-CM-6169-01 1 247769079 247769079 C A OR2G3 Missense_Mutation p.S64R 0.24 tolerated(0.1) benign(0.008) TCGA-CM-6169-01 1 26581872 26581872 A C CEP85 Missense_Mutation p.H140P 0.28 tolerated(0.33) benign(0.001) TCGA-CM-6169-01 1 38034547 38034547 G A GNL2 Silent p.N591N 0.12 TCGA-CM-6169-01 1 43903155 43903155 C T SZT2 Missense_Mutation p.A2032V 0.33 deleterious(0.03) possibly_damaging(0.794) TCGA-CM-6169-01 1 48705040 48705040 G A SLC5A9 Missense_Mutation p.R528H 0.39 deleterious(0.01) benign(0.082) TCGA-CM-6169-01 20 41101199 41101199 G A PTPRT Missense_Mutation p.P386L 0.67 deleterious(0) probably_damaging(1) TCGA-CM-6169-01 20 55072278 55072278 T A GCNT7 Missense_Mutation p.R7S 0.72 deleterious(0.01) possibly_damaging(0.896) TCGA-CM-6169-01 20 60886353 60886353 C T LAMA5 Missense_Mutation p.R3318H 0.74 benign(0.003) TCGA-CM-6169-01 21 26976186 26976186 G T MRPL39 Missense_Mutation p.D114E 0.28 tolerated(0.06) benign(0.073) TCGA-CM-6169-01 22 17073462 17073462 C T CCT8L2 5'UTR 0.28 TCGA-CM-6169-01 22 20812220 20812220 C T KLHL22 Missense_Mutation p.V394M 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-CM-6169-01 22 24621319 24621319 C T GGT5 Missense_Mutation p.R467H 0.38 deleterious(0) probably_damaging(0.982) TCGA-CM-6169-01 2 107004016 107004016 G A PLGLA Intron 0.10 TCGA-CM-6169-01 2 113958987 113958987 C T PSD4 Silent p.L1056L 0.29 TCGA-CM-6169-01 2 119915579 119915579 C T C1QL2 Silent p.P89P 0.47 TCGA-CM-6169-01 2 120925069 120925069 C T EPB41L5 Missense_Mutation p.R664W 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-6169-01 2 128186171 128186171 C A PROC Missense_Mutation p.H345Q 0.71 tolerated(0.44) benign(0) TCGA-CM-6169-01 2 161029080 161029080 C A ITGB6 Missense_Mutation p.L307F 0.64 deleterious(0.02) possibly_damaging(0.649) TCGA-CM-6169-01 2 163292056 163292056 G A KCNH7 Missense_Mutation p.R536C 0.10 deleterious(0) probably_damaging(1) TCGA-CM-6169-01 2 179577643 179577643 T G TTN Missense_Mutation p.T9037P 0.60 TCGA-CM-6169-01 2 232952306 232952306 A T DIS3L2 Missense_Mutation p.N159I 0.38 tolerated(0.12) benign(0.017) TCGA-CM-6169-01 2 72360267 72360267 C T CYP26B1 Missense_Mutation p.R344H 0.68 tolerated(0.08) benign(0.013) TCGA-CM-6169-01 2 86258686 86258686 G A POLR1A Nonsense_Mutation p.R1449* 0.40 TCGA-CM-6169-01 3 10346795 10346795 C T SEC13 Silent p.A210A 0.22 TCGA-CM-6169-01 3 10970915 10970915 G A SLC6A11 Missense_Mutation p.A421T 0.37 tolerated(0.06) probably_damaging(1) TCGA-CM-6169-01 3 121410942 121410942 G A GOLGB1 Silent p.S2423S 0.31 TCGA-CM-6169-01 3 123411686 123411686 G T MYLK Missense_Mutation p.S1154Y 0.39 deleterious(0) probably_damaging(0.995) TCGA-CM-6169-01 3 124237266 124237266 G A KALRN Missense_Mutation p.R1650Q 0.37 tolerated_low_confidence(0.16) benign(0.024) TCGA-CM-6169-01 3 147108936 147108936 C T ZIC4 Silent p.K312K 0.27 TCGA-CM-6169-01 3 178742918 178742918 C T ZMAT3 Missense_Mutation p.V253I 0.26 tolerated(0.43) benign(0.245) TCGA-CM-6169-01 3 182683478 182683478 C T DCUN1D1 Missense_Mutation p.E23K 0.40 deleterious(0.05) benign(0.033) TCGA-CM-6169-01 3 38043238 38043238 G A VILL Missense_Mutation p.A456T 0.38 tolerated(0.06) possibly_damaging(0.7) TCGA-CM-6169-01 3 38645351 38645351 G A SCN5A Missense_Mutation p.S581L 0.27 tolerated(0.49) benign(0.063) TCGA-CM-6169-01 3 42906734 42906734 G A ACKR2 Missense_Mutation p.R247Q 0.31 deleterious(0.02) benign(0.319) TCGA-CM-6169-01 3 52433642 52433642 C T DNAH1 Missense_Mutation p.R4175C 0.34 possibly_damaging(0.877) TCGA-CM-6169-01 3 64599024 64599024 T C ADAMTS9 Silent p.G1117G 0.27 TCGA-CM-6169-01 3 66434507 66434507 G A LRIG1 Missense_Mutation p.T660I 0.27 tolerated(0.22) benign(0.174) TCGA-CM-6169-01 3 7620588 7620588 T C GRM7 Silent p.G665G 0.34 TCGA-CM-6169-01 3 77671489 77671489 C T ROBO2 Silent p.D1238D 0.34 TCGA-CM-6169-01 4 104074395 104074395 C G CENPE Missense_Mutation p.D1016H 0.39 possibly_damaging(0.468) TCGA-CM-6169-01 4 122728729 122728729 G A EXOSC9 Missense_Mutation p.S186N 0.26 tolerated(0.12) benign(0.09) TCGA-CM-6169-01 4 140272348 140272348 A T NAA15 Missense_Mutation p.N272I 0.27 tolerated(0.06) benign(0.148) TCGA-CM-6169-01 4 151504674 151504674 C T MAB21L2 Missense_Mutation p.R165C 0.29 deleterious(0) probably_damaging(0.93) TCGA-CM-6169-01 4 155510708 155510708 C A FGA Missense_Mutation p.D21Y 0.23 deleterious(0) possibly_damaging(0.861) TCGA-CM-6169-01 4 185138936 185138936 C A ENPP6 Missense_Mutation p.A13S 0.30 tolerated(0.4) benign(0.007) TCGA-CM-6169-01 4 2701906 2701906 G A FAM193A Missense_Mutation p.G1045D 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.559) TCGA-CM-6169-01 4 2749561 2749561 T C TNIP2 Missense_Mutation p.M130V 0.23 tolerated(0.92) benign(0) TCGA-CM-6169-01 4 3494583 3494583 G A DOK7 Silent p.S290S 0.21 TCGA-CM-6169-01 4 5862837 5862837 G T CRMP1 Missense_Mutation p.Q191K 0.23 deleterious(0.01) benign(0.009) TCGA-CM-6169-01 4 6612878 6612878 C T MAN2B2 Silent p.N812N 0.25 TCGA-CM-6169-01 5 112173704 112173704 C T APC Nonsense_Mutation p.R805* 0.39 TCGA-CM-6169-01 5 112175891 112175891 G - APC Frame_Shift_Del p.N1535Mfs*30 0.21 TCGA-CM-6169-01 5 134194278 134194278 G A C5orf24 3'UTR 0.33 TCGA-CM-6169-01 5 139942028 139942028 C T APBB3 Silent p.P136P 0.29 TCGA-CM-6169-01 5 140588543 140588543 G A PCDHB12 Missense_Mutation p.G22R 0.13 tolerated_low_confidence(0.37) possibly_damaging(0.563) TCGA-CM-6169-01 5 150901008 150901008 C - FAT2 Frame_Shift_Del p.V3716Ffs*44 0.22 TCGA-CM-6169-01 5 151166182 151166182 A G G3BP1 Translation_Start_Site p.M1? 0.25 tolerated(0.09) benign(0.005) TCGA-CM-6169-01 5 167913550 167913550 T C RARS Splice_Site p.X15_splice 0.11 TCGA-CM-6169-01 5 178413950 178413950 G A GRM6 Silent p.N463N 0.48 TCGA-CM-6169-01 5 178541110 178541110 C A ADAMTS2 Missense_Mutation p.V1132L 0.23 tolerated(0.45) benign(0.001) TCGA-CM-6169-01 5 5466586 5466586 G A KIAA0947 Missense_Mutation p.R2011H 0.58 deleterious(0) probably_damaging(1) TCGA-CM-6169-01 6 30866046 30866046 C T DDR1 Silent p.L811L 0.23 TCGA-CM-6169-01 6 32026148 32026148 G A TNXB Silent p.D2504D 0.44 TCGA-CM-6169-01 6 39507934 39507934 C T KIF6 Missense_Mutation p.G497D 0.04 tolerated(0.15) benign(0.001) TCGA-CM-6169-01 6 46659542 46659542 T C TDRD6 Missense_Mutation p.L1226P 0.39 tolerated(0.11) benign(0.036) TCGA-CM-6169-01 6 96651266 96651266 C A FUT9 Missense_Mutation p.L79I 0.45 tolerated(0.12) possibly_damaging(0.734) TCGA-CM-6169-01 6 9903617 9903617 C T OFCC1 Intron 0.23 TCGA-CM-6169-01 7 101183245 101183245 G A COL26A1 Silent p.P173P 0.33 TCGA-CM-6169-01 7 12728742 12728742 G T ARL4A 3'UTR 0.05 TCGA-CM-6169-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.61 deleterious(0.01) possibly_damaging(0.773) TCGA-CM-6169-01 7 3678739 3678739 G A SDK1 Missense_Mutation p.A188T 0.63 deleterious(0.03) possibly_damaging(0.852) TCGA-CM-6169-01 7 45139879 45139879 T C TBRG4 3'UTR 0.10 TCGA-CM-6169-01 8 128750835 128750835 C A MYC Missense_Mutation p.D124E 0.07 deleterious(0.04) benign(0.203) TCGA-CM-6169-01 8 145947416 145947416 G A ZNF251 Silent p.H543H 0.22 TCGA-CM-6169-01 8 40683096 40683096 C T ZMAT4 Missense_Mutation p.E34K 0.18 tolerated(0.51) benign(0.221) TCGA-CM-6169-01 8 72984084 72984084 C T TRPA1 Missense_Mutation p.A44T 0.08 tolerated(0.83) benign(0) TCGA-CM-6169-01 8 99442353 99442353 A T KCNS2 3'UTR 0.53 TCGA-CM-6169-01 9 139726739 139726739 C T RABL6 Missense_Mutation p.R209C 0.29 deleterious(0) probably_damaging(0.972) TCGA-CM-6169-01 9 140851279 140851279 G A CACNA1B Missense_Mutation p.V415M 0.36 tolerated(0.07) benign(0.203) TCGA-CM-6169-01 X 118783995 118783995 T C SEPT6 Missense_Mutation p.I199V 0.06 tolerated(0.31) probably_damaging(0.986) TCGA-CM-6169-01 X 128630815 128630815 C T SMARCA1 Missense_Mutation p.R513H 0.79 deleterious(0) probably_damaging(0.957) TCGA-CM-6169-01 X 147003490 147003490 G A FMR1 Missense_Mutation p.A31T 0.75 tolerated(0.22) benign(0.003) TCGA-CM-6169-01 X 151900057 151900057 T G MAGEA12 Missense_Mutation p.Q248H 0.41 tolerated(0.12) benign(0.083) TCGA-CM-6169-01 X 32408250 32408250 T A DMD Nonsense_Mutation p.K1428* 0.11 TCGA-CM-6169-01 X 51075935 51075935 C T NUDT10 Missense_Mutation p.R40W 0.06 deleterious(0) probably_damaging(0.971) TCGA-CM-6170-01 10 124376761 124376761 C T DMBT1 Missense_Mutation p.R1497C 0.46 tolerated(0.06) possibly_damaging(0.673) TCGA-CM-6170-01 10 135020817 135020817 C T KNDC1 Silent p.A1252A 0.37 TCGA-CM-6170-01 10 27294581 27294581 C G ANKRD26 Missense_Mutation p.D1691H 0.44 deleterious(0.02) benign(0.28) TCGA-CM-6170-01 10 96333924 96333924 G A HELLS Missense_Mutation p.E229K 0.42 deleterious(0.03) possibly_damaging(0.53) TCGA-CM-6170-01 10 97698163 97698163 T G C10orf131 3'UTR 0.33 TCGA-CM-6170-01 11 10820864 10820864 G A EIF4G2 Missense_Mutation p.S811F 0.42 deleterious(0.01) possibly_damaging(0.775) TCGA-CM-6170-01 11 125325915 125325915 T A FEZ1 Missense_Mutation p.Q252L 0.48 deleterious(0.02) benign(0.136) TCGA-CM-6170-01 11 15197551 15197551 C T INSC Silent p.S154S 0.31 TCGA-CM-6170-01 11 17631856 17631856 C A OTOG Missense_Mutation p.P1682H 0.48 benign(0.016) TCGA-CM-6170-01 11 21596589 21596589 C T NELL1 3'UTR 0.39 TCGA-CM-6170-01 11 44286615 44286615 C G ALX4 Missense_Mutation p.G342A 0.46 tolerated(0.34) benign(0.104) TCGA-CM-6170-01 11 57578892 57578892 C T CTNND1 Nonsense_Mutation p.R858* 0.43 TCGA-CM-6170-01 11 63884673 63884673 G A FLRT1 Missense_Mutation p.G312S 0.11 deleterious(0.05) probably_damaging(0.923) TCGA-CM-6170-01 12 122252518 122252518 C T SETD1B Silent p.A799A 0.32 TCGA-CM-6170-01 12 49391875 49391875 C T DDN Missense_Mutation p.A262T 0.27 tolerated_low_confidence(0.29) benign(0.002) TCGA-CM-6170-01 12 53918375 53918375 T C ATF7 Silent p.E366E 0.08 TCGA-CM-6170-01 12 6705225 6705225 C T CHD4 Silent p.E657E 0.30 TCGA-CM-6170-01 12 81678037 81678037 C T PPFIA2 Missense_Mutation p.A991T 0.27 tolerated(0.41) benign(0.007) TCGA-CM-6170-01 12 9243827 9243827 C T A2M Silent p.T813T 0.08 TCGA-CM-6170-01 13 35624521 35624521 C T NBEA Nonsense_Mutation p.Q321* 0.20 TCGA-CM-6170-01 13 36767975 36767975 A G SOHLH2 Missense_Mutation p.L175P 0.07 deleterious(0) probably_damaging(0.999) TCGA-CM-6170-01 13 46287385 46287385 C T SPERT Silent p.A75A 0.31 TCGA-CM-6170-01 14 55512919 55512919 C A SOCS4 3'UTR 0.54 TCGA-CM-6170-01 15 42619596 42619596 G A GANC Missense_Mutation p.V486I 0.09 probably_damaging(0.932) TCGA-CM-6170-01 15 42619598 42619598 C T GANC Silent p.V486V 0.09 TCGA-CM-6170-01 15 43622266 43622266 C T LCMT2 Missense_Mutation p.R141K 0.46 tolerated(0.9) benign(0.008) TCGA-CM-6170-01 15 77339234 77339234 G A TSPAN3 Silent p.C235C 0.10 TCGA-CM-6170-01 15 79586933 79586933 G A ANKRD34C Missense_Mutation p.R436H 0.08 tolerated(0.07) benign(0.029) TCGA-CM-6170-01 15 89173549 89173549 G A AEN 3'UTR 0.17 TCGA-CM-6170-01 15 91423936 91423936 C T FURIN Silent p.S524S 0.12 TCGA-CM-6170-01 16 46934657 46934657 A C GPT2 Missense_Mutation p.K133Q 0.32 tolerated(0.77) benign(0.002) TCGA-CM-6170-01 16 67320723 67320723 C T PLEKHG4 Silent p.S942S 0.30 TCGA-CM-6170-01 16 84691276 84691276 C T KLHL36 Missense_Mutation p.T288M 0.26 deleterious(0.03) probably_damaging(0.912) TCGA-CM-6170-01 16 88786661 88786661 A G PIEZO1 Missense_Mutation p.S1994P 0.08 deleterious(0) probably_damaging(0.987) TCGA-CM-6170-01 16 90038362 90038362 G A CENPBD1 5'UTR 0.34 TCGA-CM-6170-01 17 1684669 1684669 C G SMYD4 Missense_Mutation p.G776R 0.59 deleterious(0) probably_damaging(0.972) TCGA-CM-6170-01 17 2595946 2595946 G A CLUH Silent p.T1080T 0.53 TCGA-CM-6170-01 17 39324367 39324367 C T KRTAP4-3 Missense_Mutation p.G20S 0.36 tolerated(0.12) unknown(0) TCGA-CM-6170-01 17 44632664 44632664 C T LRRC37A2 Missense_Mutation p.S1643L 0.22 tolerated(0.19) benign(0.001) TCGA-CM-6170-01 17 48917082 48917082 A C WFIKKN2 Missense_Mutation p.T145P 0.39 deleterious(0) probably_damaging(1) TCGA-CM-6170-01 17 78172351 78172351 G A CARD14 Silent p.A604A 0.51 TCGA-CM-6170-01 18 48241535 48241535 C T MAPK4 Silent p.D211D 0.56 TCGA-CM-6170-01 18 48591931 48591931 G A SMAD4 Missense_Mutation p.G365D 0.08 deleterious(0) probably_damaging(1) TCGA-CM-6170-01 18 56998704 56998704 A T LMAN1 Missense_Mutation p.F481Y 0.53 deleterious(0) probably_damaging(0.998) TCGA-CM-6170-01 19 10742770 10742770 G A SLC44A2 Missense_Mutation p.R254H 0.33 deleterious(0) probably_damaging(0.981) TCGA-CM-6170-01 19 11141565 11141565 A C SMARCA4 Missense_Mutation p.H1181P 0.39 probably_damaging(0.978) TCGA-CM-6170-01 19 2415805 2415805 C T TMPRSS9 Missense_Mutation p.R537C 0.34 deleterious(0) probably_damaging(0.997) TCGA-CM-6170-01 19 36728529 36728529 G A ZNF146 3'UTR 0.31 TCGA-CM-6170-01 19 3976544 3976544 A G EEF2 3'UTR 0.10 TCGA-CM-6170-01 19 41450373 41450373 C A AC092071.1 5'Flank 0.38 TCGA-CM-6170-01 19 45565444 45565444 C T CLASRP Missense_Mutation p.P299L 0.31 deleterious(0) probably_damaging(0.93) TCGA-CM-6170-01 19 54678042 54678042 C T MBOAT7 Missense_Mutation p.C372Y 0.31 deleterious(0) benign(0.376) TCGA-CM-6170-01 19 55594955 55594955 G A EPS8L1 Intron 0.46 TCGA-CM-6170-01 19 5744462 5744462 G T CATSPERD Nonsense_Mutation p.G200* 0.40 TCGA-CM-6170-01 19 622708 622708 C T POLRMT Silent p.L500L 0.22 TCGA-CM-6170-01 19 7806083 7806083 C T CD209 3'UTR 0.52 TCGA-CM-6170-01 19 9070811 9070811 T C MUC16 Silent p.T5545T 0.36 TCGA-CM-6170-01 1 118640433 118640433 C G SPAG17 Missense_Mutation p.E291Q 0.41 deleterious(0.01) probably_damaging(0.928) TCGA-CM-6170-01 1 156307949 156307949 C T CCT3 Silent p.V9V 0.36 TCGA-CM-6170-01 1 15844686 15844686 G A CASP9 Missense_Mutation p.P113S 0.37 tolerated(0.13) benign(0.244) TCGA-CM-6170-01 1 166039482 166039482 T G FAM78B Missense_Mutation p.K261T 0.27 deleterious(0) benign(0.168) TCGA-CM-6170-01 1 166039571 166039572 - G FAM78B Frame_Shift_Ins p.N232* 0.34 TCGA-CM-6170-01 1 17567196 17567196 G A PADI1 Missense_Mutation p.D567N 0.34 deleterious(0) probably_damaging(1) TCGA-CM-6170-01 1 201777275 201777275 C T NAV1 Silent p.T1281T 0.43 TCGA-CM-6170-01 1 247921183 247921183 G T OR1C1 Missense_Mutation p.H176N 0.06 deleterious(0.02) benign(0.009) TCGA-CM-6170-01 1 99470212 99470212 C T LPPR5 Missense_Mutation p.A6T 0.08 tolerated_low_confidence(0.27) benign(0) TCGA-CM-6170-01 20 31021720 31021720 G A ASXL1 Silent p.R573R 0.16 TCGA-CM-6170-01 20 40979351 40979351 G A PTPRT Silent p.Y594Y 0.19 TCGA-CM-6170-01 20 4228636 4228636 G A ADRA1D Silent p.S323S 0.44 TCGA-CM-6170-01 20 49225256 49225256 C T FAM65C Missense_Mutation p.R231H 0.25 deleterious(0) probably_damaging(0.986) TCGA-CM-6170-01 20 57766698 57766698 C T ZNF831 Silent p.G208G 0.65 TCGA-CM-6170-01 21 47731418 47731418 G A C21orf58 Missense_Mutation p.P225S 0.10 tolerated(0.06) benign(0.022) TCGA-CM-6170-01 2 138030232 138030232 G A THSD7B Missense_Mutation p.R799Q 0.34 deleterious(0) benign(0.417) TCGA-CM-6170-01 2 163253449 163253449 T - KCNH7 Frame_Shift_Del p.N805Mfs*21 0.30 TCGA-CM-6170-01 2 175346297 175346297 G A GPR155 Nonsense_Mutation p.R130* 0.08 TCGA-CM-6170-01 2 241974012 241974012 C T SNED1 Missense_Mutation p.R224C 0.45 deleterious(0.01) benign(0.262) TCGA-CM-6170-01 2 24240389 24240389 C T MFSD2B Silent p.S204S 0.38 TCGA-CM-6170-01 2 32688326 32688326 G A BIRC6 Silent p.S1606S 0.31 TCGA-CM-6170-01 2 46803717 46803717 C T RHOQ Silent p.D128D 0.35 TCGA-CM-6170-01 2 9475310 9475310 T C ASAP2 Splice_Site p.X283_splice 0.30 TCGA-CM-6170-01 3 121208694 121208694 C T POLQ Silent p.L1028L 0.37 TCGA-CM-6170-01 3 121340290 121340290 G A FBXO40 Missense_Mutation p.R5H 0.40 tolerated(0.15) benign(0.019) TCGA-CM-6170-01 3 128204912 128204912 G A GATA2 Missense_Mutation p.P177S 0.42 tolerated(0.1) probably_damaging(0.979) TCGA-CM-6170-01 3 184064536 184064536 G A CLCN2 Missense_Mutation p.P852L 0.40 deleterious(0) probably_damaging(1) TCGA-CM-6170-01 3 19924202 19924202 G A EFHB Missense_Mutation p.P723L 0.45 deleterious(0) probably_damaging(0.999) TCGA-CM-6170-01 3 38592977 38592977 C T SCN5A Missense_Mutation p.R1629Q 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-CM-6170-01 3 49755833 49755833 C T AMIGO3 Missense_Mutation p.G356R 0.41 deleterious(0.02) possibly_damaging(0.901) TCGA-CM-6170-01 3 49898428 49898428 G A CAMKV Missense_Mutation p.R196W 0.48 deleterious(0) probably_damaging(0.996) TCGA-CM-6170-01 3 52402777 52402777 C T DNAH1 Missense_Mutation p.S1929L 0.51 benign(0.219) TCGA-CM-6170-01 3 52555387 52555387 C A STAB1 Silent p.G1973G 0.44 TCGA-CM-6170-01 4 71114952 71114952 C T CSN3 Missense_Mutation p.R109C 0.07 tolerated(0.11) possibly_damaging(0.748) TCGA-CM-6170-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.31 TCGA-CM-6170-01 5 13901592 13901592 A G DNAH5 Silent p.Y607Y 0.37 TCGA-CM-6170-01 5 140188835 140188835 G A PCDHA4 Missense_Mutation p.G688D 0.40 deleterious_low_confidence(0.04) benign(0.008) TCGA-CM-6170-01 5 140249967 140249967 C T PCDHA11 Missense_Mutation p.R427W 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.496) TCGA-CM-6170-01 5 140699620 140699620 C G TAF7 5'UTR 0.36 TCGA-CM-6170-01 5 170351478 170351478 C T RANBP17 Silent p.F464F 0.05 TCGA-CM-6170-01 5 179044575 179044575 C T HNRNPH1 Missense_Mutation p.V333I 0.32 deleterious(0) probably_damaging(0.955) TCGA-CM-6170-01 5 94042967 94042967 C T MCTP1 3'UTR 0.32 TCGA-CM-6170-01 6 166580243 166580243 T C T Missense_Mutation p.K103R 0.34 deleterious(0) probably_damaging(0.938) TCGA-CM-6170-01 6 30228285 30228285 G A HCG17 Intron 0.06 TCGA-CM-6170-01 6 32036218 32036218 C T TNXB Missense_Mutation p.G2057S 0.38 probably_damaging(0.999) TCGA-CM-6170-01 6 41658914 41658914 C T TFEB Missense_Mutation p.R13Q 0.38 deleterious(0) unknown(0) TCGA-CM-6170-01 6 73834224 73834224 A C KCNQ5 Missense_Mutation p.E412D 0.38 tolerated(0.14) benign(0.002) TCGA-CM-6170-01 6 75890711 75890711 G A COL12A1 Missense_Mutation p.A703V 0.42 possibly_damaging(0.804) TCGA-CM-6170-01 7 139653236 139653236 G A TBXAS1 Missense_Mutation p.D221N 0.52 tolerated(0.3) benign(0.012) TCGA-CM-6170-01 7 141364722 141364722 C T KIAA1147 Missense_Mutation p.R362H 0.21 deleterious(0.01) possibly_damaging(0.836) TCGA-CM-6170-01 7 141799507 141799507 G T MGAM Missense_Mutation p.W1719L 0.31 tolerated(0.23) benign(0.002) TCGA-CM-6170-01 7 142564819 142564819 T A EPHB6 Silent p.P581P 0.26 TCGA-CM-6170-01 7 150730779 150730779 C A ABCB8 Silent p.P61P 0.57 TCGA-CM-6170-01 7 156436484 156436484 C T RNF32 Intron 0.48 TCGA-CM-6170-01 7 42088194 42088194 G T GLI3 Missense_Mutation p.P192H 0.54 tolerated(0.09) probably_damaging(0.94) TCGA-CM-6170-01 7 94294386 94294386 A G PEG10 3'UTR 0.48 TCGA-CM-6170-01 7 95726873 95726873 G A DYNC1I1 Missense_Mutation p.E636K 0.66 deleterious(0.02) probably_damaging(0.993) TCGA-CM-6170-01 8 104342218 104342218 C G FZD6 Missense_Mutation p.S626C 0.38 deleterious_low_confidence(0.01) benign(0.004) TCGA-CM-6170-01 8 144378457 144378457 G A ZNF696 Silent p.T204T 0.36 TCGA-CM-6170-01 8 59059049 59059049 C T FAM110B Missense_Mutation p.P87L 0.38 deleterious(0.05) possibly_damaging(0.734) TCGA-CM-6170-01 8 67342330 67342362 AAGAGGAAAGGGGGCCCGCCCAGCCAGGGAGGG - RRS1 In_Frame_Del p.P327_G337del 0.32 TCGA-CM-6170-01 8 94748246 94748246 C T RBM12B Silent p.G131G 0.07 TCGA-CM-6170-01 9 116132258 116132258 C T BSPRY Missense_Mutation p.R349W 0.23 deleterious(0) probably_damaging(0.932) TCGA-CM-6170-01 9 117008172 117008172 G A COL27A1 Silent p.P987P 0.42 TCGA-CM-6170-01 9 117066929 117066929 C T COL27A1 Silent p.D1638D 0.32 TCGA-CM-6170-01 9 135983571 135983571 T C RALGDS Missense_Mutation p.E334G 0.47 tolerated(0.35) unknown(0) TCGA-CM-6170-01 9 17342381 17342381 G A CNTLN Missense_Mutation p.D609N 0.16 tolerated(0.06) benign(0.219) TCGA-CM-6170-01 9 34723291 34723291 G A FAM205A Missense_Mutation p.R1316C 0.40 tolerated(0.12) benign(0.003) TCGA-CM-6170-01 9 71398079 71398079 A T FAM122A 3'UTR 0.25 TCGA-CM-6170-01 X 106186275 106186275 T C MORC4 Missense_Mutation p.S616G 0.30 deleterious(0) benign(0.335) TCGA-CM-6170-01 X 107975897 107975897 C T IRS4 Silent p.P1226P 0.35 TCGA-CM-6170-01 X 19389463 19389463 G A MAP3K15 Silent p.A1098A 0.30 TCGA-CM-6170-01 X 31496249 31496249 G C DMD Missense_Mutation p.L2971V 0.33 possibly_damaging(0.567) TCGA-CM-6170-01 X 48631801 48631801 C T GLOD5 Nonsense_Mutation p.R145* 0.34 TCGA-CM-6170-01 X 57622572 57622572 C G ZXDB 3'UTR 0.28 TCGA-CM-6170-01 X 84258934 84258934 G A APOOL Splice_Site p.X5_splice 0.34 TCGA-CM-6171-01 10 100010921 100010921 G A LOXL4 Missense_Mutation p.P701S 0.44 deleterious(0) probably_damaging(0.989) TCGA-CM-6171-01 10 101157290 101157290 C T GOT1 3'UTR 0.39 TCGA-CM-6171-01 10 102256971 102256971 T C SEC31B Missense_Mutation p.Y686C 0.39 deleterious(0) probably_damaging(0.987) TCGA-CM-6171-01 10 102587324 102587324 C - PAX2 Frame_Shift_Del p.R403Gfs*37 0.32 TCGA-CM-6171-01 10 102684617 102684617 C T FAM178A Missense_Mutation p.T620I 0.44 tolerated(0.42) benign(0.047) TCGA-CM-6171-01 10 102780378 102780378 G A PDZD7 Nonsense_Mutation p.R309* 0.44 TCGA-CM-6171-01 10 103766383 103766383 G A C10orf76 Missense_Mutation p.P321L 0.33 tolerated(0.17) benign(0.028) TCGA-CM-6171-01 10 104161558 104161558 G A NFKB2 Missense_Mutation p.G784R 0.46 tolerated(0.53) benign(0.008) TCGA-CM-6171-01 10 104184489 104184489 C T CUEDC2 Silent p.S45S 0.41 TCGA-CM-6171-01 10 104590641 104590641 G A CYP17A1 Missense_Mutation p.R449C 0.31 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 10 104595089 104595089 G A CYP17A1 Missense_Mutation p.H120Y 0.42 tolerated(1) benign(0.366) TCGA-CM-6171-01 10 105201614 105201614 G A PDCD11 Missense_Mutation p.R1530Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 10 105218344 105218344 G A CALHM1 Silent p.G55G 0.40 TCGA-CM-6171-01 10 105795256 105795256 C T COL17A1 Missense_Mutation p.E1162K 0.17 probably_damaging(0.912) TCGA-CM-6171-01 10 114059270 114059270 C T TECTB Silent p.R285R 0.39 TCGA-CM-6171-01 10 114182131 114182131 G A ACSL5 Missense_Mutation p.E565K 0.38 tolerated(0.05) benign(0.018) TCGA-CM-6171-01 10 114917783 114917785 AAG - TCF7L2 In_Frame_Del p.K428del 0.34 TCGA-CM-6171-01 10 115423142 115423142 C T NRAP Missense_Mutation p.V46M 0.39 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-CM-6171-01 10 115668142 115668142 T C NHLRC2 Silent p.L676L 0.40 TCGA-CM-6171-01 10 117823895 117823895 T - GFRA1 3'UTR 0.31 TCGA-CM-6171-01 10 12131176 12131176 C T DHTKD1 Silent p.G303G 0.51 TCGA-CM-6171-01 10 121563784 121563784 G A INPP5F Missense_Mutation p.V406I 0.37 tolerated(0.09) possibly_damaging(0.823) TCGA-CM-6171-01 10 124713660 124713660 C T C10orf88 Missense_Mutation p.R12H 0.39 tolerated(0.12) benign(0.004) TCGA-CM-6171-01 10 124895627 124895627 C - HMX3 Frame_Shift_Del p.P23Hfs*100 0.41 TCGA-CM-6171-01 10 125426454 125426454 C T GPR26 Silent p.H177H 0.41 TCGA-CM-6171-01 10 127464294 127464294 G A MMP21 Missense_Mutation p.R33C 0.46 tolerated(0.13) benign(0.016) TCGA-CM-6171-01 10 129216800 129216800 G A DOCK1 Missense_Mutation p.E1542K 0.39 deleterious(0) possibly_damaging(0.745) TCGA-CM-6171-01 10 129218005 129218005 G T DOCK1 Missense_Mutation p.A1569S 0.47 deleterious(0.02) possibly_damaging(0.683) TCGA-CM-6171-01 10 131565160 131565160 C T MGMT Missense_Mutation p.R206W 0.41 deleterious(0.02) probably_damaging(0.943) TCGA-CM-6171-01 10 13361236 13361236 C T SEPHS1 Missense_Mutation p.R362H 0.41 deleterious(0.02) benign(0.064) TCGA-CM-6171-01 10 13386894 13386894 C T SEPHS1 Silent p.R19R 0.38 TCGA-CM-6171-01 10 135012168 135012168 C T KNDC1 Missense_Mutation p.A719V 0.43 tolerated(0.29) benign(0.006) TCGA-CM-6171-01 10 135015095 135015095 G A KNDC1 Missense_Mutation p.R1027Q 0.39 tolerated(0.83) benign(0.006) TCGA-CM-6171-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.34 TCGA-CM-6171-01 10 22880664 22880664 C T PIP4K2A Missense_Mutation p.R129H 0.40 deleterious(0.04) benign(0.035) TCGA-CM-6171-01 10 23270323 23270323 T - ARMC3 Frame_Shift_Del p.L325Wfs*37 0.32 TCGA-CM-6171-01 10 23481501 23481501 C T PTF1A Silent p.D14D 0.30 TCGA-CM-6171-01 10 27537679 27537679 C T RP11-85G18.6 Intron 0.38 TCGA-CM-6171-01 10 32317452 32317452 C T KIF5B Missense_Mutation p.M543I 0.43 tolerated(0.28) benign(0.029) TCGA-CM-6171-01 10 34636994 34636994 G A PARD3 Missense_Mutation p.A706V 0.36 tolerated(0.66) benign(0) TCGA-CM-6171-01 10 35500202 35500202 G A CREM Intron 0.43 TCGA-CM-6171-01 10 35897517 35897517 C A GJD4 Missense_Mutation p.A359D 0.46 deleterious(0.03) benign(0.433) TCGA-CM-6171-01 10 394643 394643 C T DIP2C Missense_Mutation p.V1057I 0.38 tolerated(0.92) benign(0.239) TCGA-CM-6171-01 10 43316002 43316002 G A BMS1 Missense_Mutation p.R939Q 0.09 deleterious(0.03) benign(0.33) TCGA-CM-6171-01 10 43692438 43692438 A G RASGEF1A Missense_Mutation p.I445T 0.37 deleterious(0) benign(0.027) TCGA-CM-6171-01 10 45924084 45924084 G A ALOX5 Missense_Mutation p.V285M 0.39 deleterious(0.03) probably_damaging(0.994) TCGA-CM-6171-01 10 48414446 48414446 C A GDF2 Missense_Mutation p.R141M 0.35 deleterious(0.02) probably_damaging(0.943) TCGA-CM-6171-01 10 49658470 49658470 G A ARHGAP22 Missense_Mutation p.H584Y 0.31 tolerated(0.34) benign(0.003) TCGA-CM-6171-01 10 50165189 50165189 G A WDFY4 Missense_Mutation p.V2665M 0.58 deleterious(0) probably_damaging(0.994) TCGA-CM-6171-01 10 50178201 50178201 C T WDFY4 Missense_Mutation p.A2932V 0.39 deleterious(0.03) possibly_damaging(0.855) TCGA-CM-6171-01 10 50535261 50535261 G A C10orf71 3'UTR 0.26 TCGA-CM-6171-01 10 51465597 51465597 T C AGAP7 Missense_Mutation p.N287D 0.41 tolerated(0.52) benign(0.063) TCGA-CM-6171-01 10 5781863 5781863 G A FAM208B Missense_Mutation p.R577Q 0.40 tolerated(0.28) benign(0.049) TCGA-CM-6171-01 10 61414220 61414220 C T SLC16A9 Missense_Mutation p.M188I 0.44 deleterious(0) probably_damaging(0.962) TCGA-CM-6171-01 10 61829305 61829305 T - ANK3 Frame_Shift_Del p.K3778Nfs*26 0.30 TCGA-CM-6171-01 10 6275023 6275023 G A PFKFB3 3'UTR 0.21 TCGA-CM-6171-01 10 70100965 70100965 T C HNRNPH3 Missense_Mutation p.I225T 0.36 tolerated(0.06) possibly_damaging(0.672) TCGA-CM-6171-01 10 70101421 70101421 C T HNRNPH3 Silent p.Y285Y 0.40 TCGA-CM-6171-01 10 70451397 70451397 G T TET1 Missense_Mutation p.K2079N 0.30 tolerated(0.21) possibly_damaging(0.649) TCGA-CM-6171-01 10 70696698 70696698 G A DDX50 Silent p.L534L 0.36 TCGA-CM-6171-01 10 71695138 71695138 C T COL13A1 Silent p.P576P 0.41 TCGA-CM-6171-01 10 72643742 72643742 T C PCBD1 Missense_Mutation p.S94G 0.41 tolerated(0.12) benign(0.094) TCGA-CM-6171-01 10 73121879 73121879 C T SLC29A3 Silent p.Y314Y 0.53 TCGA-CM-6171-01 10 73556756 73556756 G A CDH23 Intron 0.42 TCGA-CM-6171-01 10 75008054 75008054 C T DNAJC9 5'UTR 0.45 TCGA-CM-6171-01 10 75408431 75408431 C T SYNPO2L Missense_Mutation p.V327I 0.49 tolerated(0.25) benign(0.003) TCGA-CM-6171-01 10 77158921 77158921 G A ZNF503 Silent p.N509N 0.55 TCGA-CM-6171-01 10 79601785 79601785 C T DLG5 Missense_Mutation p.E431K 0.30 tolerated(0.09) probably_damaging(0.991) TCGA-CM-6171-01 10 81373771 81373771 G A SFTPA1 Missense_Mutation p.A232T 0.38 tolerated(0.15) possibly_damaging(0.551) TCGA-CM-6171-01 10 82271925 82271925 C A TSPAN14 Missense_Mutation p.P159H 0.43 deleterious(0.01) probably_damaging(0.981) TCGA-CM-6171-01 10 82280257 82280257 G A TSPAN14 3'UTR 0.49 TCGA-CM-6171-01 10 84718813 84718813 C T NRG3 Silent p.S422S 0.42 TCGA-CM-6171-01 10 88419711 88419711 G A OPN4 Missense_Mutation p.R298Q 0.41 tolerated(0.06) benign(0.22) TCGA-CM-6171-01 10 88441540 88441540 G A LDB3 Silent p.S223S 0.48 TCGA-CM-6171-01 10 88702167 88702167 G A MMRN2 Missense_Mutation p.R792W 0.44 deleterious(0) probably_damaging(0.928) TCGA-CM-6171-01 10 88911951 88911951 C T FAM35A Silent p.Y280Y 0.38 TCGA-CM-6171-01 10 91514406 91514406 T - KIF20B Frame_Shift_Del p.F1455Lfs*10 0.39 TCGA-CM-6171-01 10 94714489 94714489 T G EXOC6 Silent p.G543G 0.58 TCGA-CM-6171-01 10 95163932 95163932 A G MYOF Silent p.D258D 0.35 TCGA-CM-6171-01 10 98292921 98292921 A - TM9SF3 Frame_Shift_Del p.F404Lfs*6 0.30 TCGA-CM-6171-01 10 98743243 98743243 C T C10orf12 Missense_Mutation p.P699L 0.36 tolerated(0.12) benign(0.009) TCGA-CM-6171-01 10 98766403 98766403 C A SLIT1 Missense_Mutation p.G1139V 0.28 deleterious(0.01) possibly_damaging(0.649) TCGA-CM-6171-01 10 99338057 99338057 G A ANKRD2 Missense_Mutation p.G111R 0.38 deleterious(0.02) probably_damaging(0.986) TCGA-CM-6171-01 11 104869694 104869694 C T CASP5 Silent p.Q351Q 0.37 TCGA-CM-6171-01 11 109294465 109294465 C T C11orf87 Missense_Mutation p.R36C 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.855) TCGA-CM-6171-01 11 109295443 109295443 T G C11orf87 3'UTR 0.46 TCGA-CM-6171-01 11 1093705 1093705 G A MUC2 Missense_Mutation p.A1842T 0.48 unknown(0) TCGA-CM-6171-01 11 118365419 118365419 G A KMT2A Missense_Mutation p.R1767H 0.37 probably_damaging(0.996) TCGA-CM-6171-01 11 118369101 118369101 A - KMT2A Frame_Shift_Del p.K1941Sfs*43 0.33 TCGA-CM-6171-01 11 119027675 119027675 G T ABCG4 Missense_Mutation p.S340I 0.40 tolerated(0.06) benign(0.002) TCGA-CM-6171-01 11 119181807 119181807 G T MCAM Silent p.T546T 0.44 TCGA-CM-6171-01 11 11986111 11986111 C T DKK3 Missense_Mutation p.R318H 0.37 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-CM-6171-01 11 120690602 120690602 G A GRIK4 Missense_Mutation p.A162T 0.43 tolerated(0.18) benign(0.041) TCGA-CM-6171-01 11 121457040 121457040 T C SORL1 Splice_Site p.X1272_splice 0.40 TCGA-CM-6171-01 11 123596975 123596975 G A ZNF202 Silent p.H559H 0.31 TCGA-CM-6171-01 11 123909263 123909263 A C OR10G7 Missense_Mutation p.L149R 0.32 deleterious(0) probably_damaging(0.971) TCGA-CM-6171-01 11 125315852 125315852 G A FEZ1 3'UTR 0.35 TCGA-CM-6171-01 11 125618700 125618701 - A PATE1 3'UTR 0.21 TCGA-CM-6171-01 11 126120425 126120425 T - FAM118B Frame_Shift_Del p.F123Sfs*30 0.30 TCGA-CM-6171-01 11 130343316 130343316 C A ADAMTS15 Missense_Mutation p.P818H 0.45 tolerated(0.07) benign(0.229) TCGA-CM-6171-01 11 132398956 132398956 C A OPCML Missense_Mutation p.K175N 0.34 tolerated(0.08) benign(0.219) TCGA-CM-6171-01 11 133790191 133790191 G A IGSF9B Silent p.G1143G 0.47 TCGA-CM-6171-01 11 133791153 133791155 TCT - IGSF9B In_Frame_Del p.K822del 0.11 TCGA-CM-6171-01 11 133816151 133816151 C T IGSF9B Missense_Mutation p.A23T 0.29 deleterious(0.04) possibly_damaging(0.672) TCGA-CM-6171-01 11 134023204 134023204 C T NCAPD3 Missense_Mutation p.R1436Q 0.36 tolerated(0.75) benign(0.001) TCGA-CM-6171-01 11 16847938 16847938 G A PLEKHA7 Missense_Mutation p.R358W 0.23 deleterious(0.01) possibly_damaging(0.677) TCGA-CM-6171-01 11 17452411 17452411 C T ABCC8 Silent p.P589P 0.45 TCGA-CM-6171-01 11 1858685 1858685 C T SYT8 3'UTR 0.42 TCGA-CM-6171-01 11 19735307 19735307 G A NAV2 Silent p.A22A 0.61 TCGA-CM-6171-01 11 19955158 19955158 C A NAV2 Silent p.S479S 0.42 TCGA-CM-6171-01 11 19961209 19961209 C A NAV2 Missense_Mutation p.S702Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-CM-6171-01 11 2593269 2593269 G T KCNQ1 Missense_Mutation p.R237M 0.28 deleterious(0) probably_damaging(0.997) TCGA-CM-6171-01 11 27406825 27406825 T C LGR4 Missense_Mutation p.T198A 0.37 tolerated(0.88) benign(0.004) TCGA-CM-6171-01 11 27406932 27406932 T C LGR4 Missense_Mutation p.D162G 0.40 deleterious(0.02) probably_damaging(1) TCGA-CM-6171-01 11 2909505 2909506 - G SLC22A18AS Frame_Shift_Ins p.N223Qfs*8 0.31 TCGA-CM-6171-01 11 31349738 31349738 T A DCDC1 Missense_Mutation p.Q30H 0.41 deleterious_low_confidence(0.04) benign(0.006) TCGA-CM-6171-01 11 314229 314229 C T IFITM1 Missense_Mutation p.P20L 0.38 tolerated(0.42) possibly_damaging(0.908) TCGA-CM-6171-01 11 34937904 34937904 G A APIP 5'UTR 0.58 TCGA-CM-6171-01 11 36483960 36483960 A G PRR5L Missense_Mutation p.S261G 0.36 tolerated(0.09) benign(0) TCGA-CM-6171-01 11 400077 400077 C - PKP3 Frame_Shift_Del p.L464Sfs*183 0.41 TCGA-CM-6171-01 11 43284775 43284775 C T HNRNPKP3 RNA 0.35 TCGA-CM-6171-01 11 46563889 46563889 G T AMBRA1 Missense_Mutation p.L470M 0.45 deleterious_low_confidence(0.03) probably_damaging(0.937) TCGA-CM-6171-01 11 46917494 46917495 - C LRP4 Frame_Shift_Ins p.A375Gfs*24 0.30 TCGA-CM-6171-01 11 4703475 4703475 A - OR51E2 Frame_Shift_Del p.F156Sfs*6 0.31 TCGA-CM-6171-01 11 47267032 47267032 C T ACP2 Missense_Mutation p.R181Q 0.39 tolerated(0.63) benign(0.001) TCGA-CM-6171-01 11 47270148 47270148 C T ACP2 Intron 0.43 TCGA-CM-6171-01 11 47283147 47283147 G A NR1H3 Missense_Mutation p.R253H 0.46 tolerated(0.06) probably_damaging(0.998) TCGA-CM-6171-01 11 47367845 47367845 G A MYBPC3 Missense_Mutation p.R335C 0.45 deleterious(0) probably_damaging(0.915) TCGA-CM-6171-01 11 47606048 47606048 T C NDUFS3 3'UTR 0.43 TCGA-CM-6171-01 11 47744606 47744606 A T FNBP4 Silent p.P909P 0.33 TCGA-CM-6171-01 11 4903712 4903712 T C OR51T1 Missense_Mutation p.W222R 0.48 tolerated(1) possibly_damaging(0.898) TCGA-CM-6171-01 11 49204780 49204780 G A FOLH1 Missense_Mutation p.R281C 0.06 tolerated(0.07) benign(0.179) TCGA-CM-6171-01 11 5323157 5323157 G A OR51B4 Missense_Mutation p.A7V 0.38 tolerated(0.09) benign(0.008) TCGA-CM-6171-01 11 5530615 5530615 G A UBQLN3 Silent p.P58P 0.40 TCGA-CM-6171-01 11 55872701 55890031 11:55872701-55890031 - OR8H2 large deletion 0.31 TCGA-CM-6171-01 11 5686249 5686249 A C TRIM5 Silent p.P424P 0.39 TCGA-CM-6171-01 11 60702830 60702830 C T TMEM132A Missense_Mutation p.S649L 0.35 deleterious(0) possibly_damaging(0.852) TCGA-CM-6171-01 11 60890434 60890434 G A CD5 Silent p.L385L 0.37 TCGA-CM-6171-01 11 6190887 6190887 G T OR52B2 Missense_Mutation p.L224I 0.53 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 11 6220549 6220549 G A OR52W1 Silent p.L32L 0.48 TCGA-CM-6171-01 11 62491848 62491848 G A HNRNPUL2 Missense_Mutation p.R197W 0.41 deleterious(0) probably_damaging(0.948) TCGA-CM-6171-01 11 62521459 62521461 GAA - ZBTB3 In_Frame_Del p.L25del 0.31 TCGA-CM-6171-01 11 62650386 62650386 G A SLC3A2 Missense_Mutation p.R304H 0.40 tolerated(0.2) benign(0.015) TCGA-CM-6171-01 11 6292764 6292764 C A CCKBR Silent p.G445G 0.28 TCGA-CM-6171-01 11 63662750 63662750 C A MARK2 Silent p.T58T 0.34 TCGA-CM-6171-01 11 63667484 63667484 A - MARK2 Frame_Shift_Del p.K225Nfs*12 0.30 TCGA-CM-6171-01 11 63681765 63681765 C T RCOR2 Missense_Mutation p.G215R 0.36 tolerated(0.34) possibly_damaging(0.68) TCGA-CM-6171-01 11 63970926 63970926 C T STIP1 Missense_Mutation p.A464V 0.49 deleterious(0.02) possibly_damaging(0.616) TCGA-CM-6171-01 11 6412046 6412046 T C SMPD1 Missense_Mutation p.L73S 0.26 tolerated(0.13) benign(0.016) TCGA-CM-6171-01 11 64418762 64418762 G A NRXN2 Silent p.N961N 0.52 TCGA-CM-6171-01 11 64676541 64676541 T C ATG2A Silent p.S762S 0.45 TCGA-CM-6171-01 11 64756513 64756513 A G BATF2 3'UTR 0.50 TCGA-CM-6171-01 11 64812128 64812128 C T SAC3D1 Missense_Mutation p.R336C 0.36 tolerated(0.19) benign(0.015) TCGA-CM-6171-01 11 64875156 64875156 C T VPS51 Silent p.S154S 0.38 TCGA-CM-6171-01 11 64973987 64973987 G A CAPN1 Silent p.A469A 0.53 TCGA-CM-6171-01 11 65387379 65387379 G A PCNXL3 Missense_Mutation p.V662M 0.38 tolerated(0.73) probably_damaging(0.94) TCGA-CM-6171-01 11 65409834 65409834 G A SIPA1 Missense_Mutation p.V265M 0.48 deleterious(0.01) possibly_damaging(0.472) TCGA-CM-6171-01 11 65793649 65793649 C T CATSPER1 Missense_Mutation p.D68N 0.40 tolerated(0.1) benign(0.052) TCGA-CM-6171-01 11 6592888 6592888 C T DNHD1 Missense_Mutation p.T4645M 0.12 benign(0.175) TCGA-CM-6171-01 11 66243358 66243358 G A PELI3 Missense_Mutation p.R377Q 0.41 tolerated(0.34) benign(0.002) TCGA-CM-6171-01 11 66311378 66311378 C T ZDHHC24 Missense_Mutation p.R119H 0.49 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 11 66358900 66358900 T C CCDC87 Silent p.S529S 0.44 TCGA-CM-6171-01 11 66811193 66811193 C T SYT12 Missense_Mutation p.R236W 0.43 tolerated(0.18) benign(0.148) TCGA-CM-6171-01 11 70805713 70805713 G T SHANK2 Missense_Mutation p.A205D 0.36 deleterious(0) probably_damaging(0.948) TCGA-CM-6171-01 11 7111271 7111271 G A RBMXL2 Missense_Mutation p.R307H 0.39 tolerated(0.16) possibly_damaging(0.522) TCGA-CM-6171-01 11 72028248 72028248 C T CLPB Missense_Mutation p.R327Q 0.41 tolerated(0.08) benign(0.018) TCGA-CM-6171-01 11 72295736 72295736 C T PDE2A Missense_Mutation p.A466T 0.41 tolerated(0.1) probably_damaging(0.958) TCGA-CM-6171-01 11 72946374 72946374 G A P2RY2 3'UTR 0.43 TCGA-CM-6171-01 11 73022715 73022715 T - ARHGEF17 Frame_Shift_Del p.M1011Sfs*2 0.25 TCGA-CM-6171-01 11 73760407 73760407 C T C2CD3 Missense_Mutation p.R1779H 0.36 tolerated(0.13) benign(0.033) TCGA-CM-6171-01 11 74862326 74862326 C T SLCO2B1 5'UTR 0.37 TCGA-CM-6171-01 11 75139604 75139604 G A KLHL35 Missense_Mutation p.P317S 0.44 tolerated(0.13) unknown(0) TCGA-CM-6171-01 11 75316774 75316788 TGGTTTGTTGGTTTA GGTTTGTTGGTTT MAP6 Intron 0.29 TCGA-CM-6171-01 11 76890877 76890877 G A MYO7A Missense_Mutation p.A822T 0.29 tolerated(0.11) possibly_damaging(0.765) TCGA-CM-6171-01 11 77612479 77612479 C T INTS4 Missense_Mutation p.R739Q 0.45 tolerated(0.1) possibly_damaging(0.448) TCGA-CM-6171-01 11 77775044 77775044 C T THRSP Silent p.D39D 0.37 TCGA-CM-6171-01 11 77937646 77937646 G A GAB2 Missense_Mutation p.P358S 0.46 tolerated(0.53) possibly_damaging(0.902) TCGA-CM-6171-01 11 7981809 7981809 G A NLRP10 Silent p.N450N 0.38 TCGA-CM-6171-01 11 82443448 82443448 G A FAM181B 3'UTR 0.38 TCGA-CM-6171-01 11 83770409 83770409 G A DLG2 Nonsense_Mutation p.R290* 0.42 TCGA-CM-6171-01 11 89177398 89177398 C T NOX4 Missense_Mutation p.V118M 0.38 tolerated(0.06) benign(0.097) TCGA-CM-6171-01 11 92086160 92086160 G A FAT3 Silent p.A294A 0.36 TCGA-CM-6171-01 11 99786836 99786836 G T CNTN5 Missense_Mutation p.G210C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 12 100567014 100567014 T C RP11-175P13.3 RNA 0.42 TCGA-CM-6171-01 12 104100746 104100746 C T STAB2 Silent p.Y1391Y 0.46 TCGA-CM-6171-01 12 104171648 104171649 - G NT5DC3 Frame_Shift_Ins p.T536Hfs*20 0.32 TCGA-CM-6171-01 12 105601945 105601945 C T APPL2 Missense_Mutation p.A136T 0.39 deleterious(0.02) benign(0.113) TCGA-CM-6171-01 12 106532271 106532271 C T NUAK1 Missense_Mutation p.R54H 0.40 deleterious(0.02) probably_damaging(0.991) TCGA-CM-6171-01 12 107371288 107371288 T C MTERFD3 3'Flank 0.31 TCGA-CM-6171-01 12 109182069 109182069 C T SSH1 Missense_Mutation p.G949R 0.49 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-6171-01 12 109186272 109186272 G A SSH1 Silent p.S561S 0.53 TCGA-CM-6171-01 12 109541255 109541255 G A UNG Missense_Mutation p.A214T 0.51 tolerated(0.51) possibly_damaging(0.684) TCGA-CM-6171-01 12 10954529 10954529 C T TAS2R7 Missense_Mutation p.R214Q 0.39 tolerated(1) benign(0.005) TCGA-CM-6171-01 12 109577291 109577291 G A ACACB Silent p.T27T 0.50 TCGA-CM-6171-01 12 110344435 110344435 A - TCHP Frame_Shift_Del p.K174Nfs*26 0.33 TCGA-CM-6171-01 12 110765712 110765712 A - ATP2A2 Frame_Shift_Del p.N330Mfs*55 0.28 TCGA-CM-6171-01 12 111957769 111957769 C T ATXN2 Silent p.L460L 0.36 TCGA-CM-6171-01 12 112327900 112327900 C T MAPKAPK5 Missense_Mutation p.R427W 0.33 deleterious(0.02) benign(0.399) TCGA-CM-6171-01 12 112590789 112590789 C T TRAFD1 3'UTR 0.45 TCGA-CM-6171-01 12 112622027 112622027 G A HECTD4 Silent p.L3435L 0.31 TCGA-CM-6171-01 12 112691887 112691887 C T HECTD4 Missense_Mutation p.R990H 0.32 possibly_damaging(0.481) TCGA-CM-6171-01 12 112891008 112891008 T C PTPN11 Silent p.H114H 0.48 TCGA-CM-6171-01 12 113348965 113348965 A G OAS1 Silent p.L193L 0.42 TCGA-CM-6171-01 12 113633591 113633591 C T IQCD Missense_Mutation p.R278Q 0.53 tolerated(0.39) benign(0.053) TCGA-CM-6171-01 12 114841689 114841689 G A TBX5 Silent p.D5D 0.43 TCGA-CM-6171-01 12 117909030 117909030 T - KSR2 Frame_Shift_Del p.N893Tfs*116 0.31 TCGA-CM-6171-01 12 117977618 117977618 C T KSR2 Silent p.S531S 0.48 TCGA-CM-6171-01 12 118405910 118405910 G T KSR2 Missense_Mutation p.L51I 0.48 deleterious(0) benign(0.071) TCGA-CM-6171-01 12 118588924 118588924 C T TAOK3 Missense_Mutation p.E859K 0.33 tolerated(0.12) benign(0.103) TCGA-CM-6171-01 12 119419636 119419636 G A SRRM4 5'UTR 0.48 TCGA-CM-6171-01 12 119568489 119568489 C T SRRM4 Silent p.R207R 0.42 TCGA-CM-6171-01 12 120428058 120428058 G T CCDC64 Missense_Mutation p.R129L 0.47 tolerated(0.12) possibly_damaging(0.74) TCGA-CM-6171-01 12 120596365 120596365 T C GCN1L1 Missense_Mutation p.D935G 0.35 possibly_damaging(0.877) TCGA-CM-6171-01 12 120650066 120650066 G A PXN 3'UTR 0.58 TCGA-CM-6171-01 12 121434399 121434399 G A HNF1A Missense_Mutation p.S388N 0.33 tolerated(0.14) benign(0.034) TCGA-CM-6171-01 12 122242658 122242658 C - SETD1B Frame_Shift_Del p.H8Tfs*27 0.29 TCGA-CM-6171-01 12 122248526 122248526 C - SETD1B Frame_Shift_Del p.S561Rfs*47 0.48 TCGA-CM-6171-01 12 122658429 122658429 C T IL31 Missense_Mutation p.E43K 0.11 tolerated(0.23) benign(0.002) TCGA-CM-6171-01 12 122773037 122773037 T - CLIP1 Frame_Shift_Del p.R1216Efs*6 0.34 TCGA-CM-6171-01 12 122968077 122968077 A - ZCCHC8 Frame_Shift_Del p.C179Afs*10 0.34 TCGA-CM-6171-01 12 123950465 123950465 C T SNRNP35 Silent p.Y131Y 0.43 TCGA-CM-6171-01 12 124330346 124330346 A - DNAH10 Frame_Shift_Del p.K1737Nfs*15 0.37 TCGA-CM-6171-01 12 124398943 124398943 G A DNAH10 Missense_Mutation p.A3356T 0.45 possibly_damaging(0.654) TCGA-CM-6171-01 12 124422055 124422055 C - CCDC92 Frame_Shift_Del p.S183Afs*24 0.35 TCGA-CM-6171-01 12 124809981 124809981 G A NCOR2 Silent p.C2504C 0.50 TCGA-CM-6171-01 12 125302100 125302100 A G SCARB1 Missense_Mutation p.Y94H 0.49 deleterious(0) probably_damaging(0.987) TCGA-CM-6171-01 12 12629727 12629727 A - DUSP16 3'UTR 0.32 TCGA-CM-6171-01 12 129558522 129558522 C T TMEM132D Silent p.V1066V 0.40 TCGA-CM-6171-01 12 13102735 13102735 G A GPRC5D Missense_Mutation p.P195L 0.41 deleterious(0.01) probably_damaging(1) TCGA-CM-6171-01 12 132681620 132681620 C T GALNT9 3'UTR 0.49 TCGA-CM-6171-01 12 133148061 133148061 C - FBRSL1 Frame_Shift_Del p.F463Sfs*33 0.24 TCGA-CM-6171-01 12 133360779 133360779 G A GOLGA3 Missense_Mutation p.R1080W 0.38 deleterious(0) probably_damaging(0.992) TCGA-CM-6171-01 12 133733624 133733624 T C ZNF10 3'UTR 0.56 TCGA-CM-6171-01 12 20522722 20522723 - G PDE3A Frame_Shift_Ins p.E171Gfs*49 0.37 TCGA-CM-6171-01 12 21926187 21926188 - CA KCNJ8 Frame_Shift_Ins p.T122* 0.33 TCGA-CM-6171-01 12 25705874 25705874 A C IFLTD1 Missense_Mutation p.I7S 0.41 tolerated(0.25) benign(0.022) TCGA-CM-6171-01 12 2675737 2675737 C T CACNA1C Missense_Mutation p.T553I 0.40 deleterious(0) probably_damaging(0.992) TCGA-CM-6171-01 12 27067448 27067448 C T ASUN Missense_Mutation p.D438N 0.40 tolerated(0.25) benign(0.121) TCGA-CM-6171-01 12 272740 272740 G T IQSEC3 Missense_Mutation p.Q888H 0.31 tolerated(0.08) possibly_damaging(0.585) TCGA-CM-6171-01 12 27461280 27461280 A G STK38L Silent p.L65L 0.34 TCGA-CM-6171-01 12 27877080 27877080 A G MRPS35 Silent p.P161P 0.42 TCGA-CM-6171-01 12 28116407 28116407 C T PTHLH Missense_Mutation p.R133H 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-CM-6171-01 12 30783835 30783835 G T IPO8 Missense_Mutation p.L1025I 0.39 deleterious(0.04) benign(0.001) TCGA-CM-6171-01 12 30881801 30881801 G A CAPRIN2 Silent p.S521S 0.45 TCGA-CM-6171-01 12 32134466 32134466 C T KIAA1551 Nonsense_Mutation p.Q193* 0.42 TCGA-CM-6171-01 12 32490495 32490497 AGA - BICD1 In_Frame_Del p.K774del 0.40 TCGA-CM-6171-01 12 3742841 3742841 G A EFCAB4B Missense_Mutation p.A555V 0.46 deleterious(0.01) benign(0.319) TCGA-CM-6171-01 12 40697755 40697755 G A LRRK2 Missense_Mutation p.R1199Q 0.52 deleterious(0) probably_damaging(0.997) TCGA-CM-6171-01 12 40961485 40961485 G A MUC19 3'UTR 0.32 TCGA-CM-6171-01 12 43822553 43822553 C T ADAMTS20 Missense_Mutation p.R1180H 0.50 deleterious(0) probably_damaging(0.992) TCGA-CM-6171-01 12 4479909 4479909 G A FGF23 Missense_Mutation p.T119M 0.35 tolerated(0.11) benign(0.153) TCGA-CM-6171-01 12 45781952 45781952 T - ANO6 Frame_Shift_Del p.L414Wfs*37 0.32 TCGA-CM-6171-01 12 48174235 48174235 G A SLC48A1 3'UTR 0.41 TCGA-CM-6171-01 12 48723821 48723821 C A H1FNT Silent p.P249P 0.48 TCGA-CM-6171-01 12 49374261 49374261 C T WNT1 Missense_Mutation p.S138L 0.39 deleterious(0) benign(0.37) TCGA-CM-6171-01 12 49435156 49435156 C T KMT2D Missense_Mutation p.A2133T 0.57 possibly_damaging(0.895) TCGA-CM-6171-01 12 49436393 49436393 G T KMT2D Missense_Mutation p.P1940T 0.42 benign(0.189) TCGA-CM-6171-01 12 49500774 49500774 G A LMBR1L Missense_Mutation p.R43C 0.45 deleterious(0.01) possibly_damaging(0.562) TCGA-CM-6171-01 12 50191115 50191115 C T NCKAP5L Silent p.A176A 0.40 TCGA-CM-6171-01 12 50232707 50232707 C T BCDIN3D Missense_Mutation p.C109Y 0.51 deleterious(0.01) benign(0.327) TCGA-CM-6171-01 12 50369316 50369316 C T AQP6 Silent p.P237P 0.40 TCGA-CM-6171-01 12 50471864 50471864 G A ASIC1 Missense_Mutation p.G264D 0.33 deleterious(0.01) possibly_damaging(0.628) TCGA-CM-6171-01 12 51392999 51392999 A - SLC11A2 Frame_Shift_Del p.F240Lfs*19 0.36 TCGA-CM-6171-01 12 52200981 52200981 G A SCN8A Missense_Mutation p.R1904H 0.37 deleterious(0) possibly_damaging(0.864) TCGA-CM-6171-01 12 52636842 52636842 G A KRT7 Missense_Mutation p.R302Q 0.35 deleterious(0.02) benign(0.068) TCGA-CM-6171-01 12 52713013 52713013 C T KRT83 Missense_Mutation p.V174M 0.49 tolerated(0.07) benign(0.316) TCGA-CM-6171-01 12 53703424 53703424 C - AAAS Frame_Shift_Del p.R258Gfs*33 0.38 TCGA-CM-6171-01 12 53861592 53861592 T C PCBP2 Missense_Mutation p.I268T 0.51 tolerated(0.15) benign(0.097) TCGA-CM-6171-01 12 53896915 53896915 T C TARBP2 Splice_Site p.X109_splice 0.36 TCGA-CM-6171-01 12 54448817 54448817 G A HOXC4 Missense_Mutation p.R208H 0.37 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 12 55421127 55421128 - C NEUROD4 Frame_Shift_Ins p.R304Pfs*3 0.28 TCGA-CM-6171-01 12 55524074 55524074 T - OR9K2 Frame_Shift_Del p.C176Vfs*12 0.34 TCGA-CM-6171-01 12 56031069 56031069 C T OR10P1 Missense_Mutation p.R132C 0.42 deleterious(0.03) possibly_damaging(0.776) TCGA-CM-6171-01 12 56222449 56222449 G A DNAJC14 5'UTR 0.41 TCGA-CM-6171-01 12 56346584 56346584 A G DGKA Missense_Mutation p.S604G 0.48 deleterious(0) probably_damaging(0.987) TCGA-CM-6171-01 12 56494877 56494877 C - ERBB3 Frame_Shift_Del p.R1080Vfs*22 0.16 TCGA-CM-6171-01 12 56997410 56997410 C T BAZ2A Missense_Mutation p.R1040Q 0.37 deleterious(0.03) probably_damaging(0.99) TCGA-CM-6171-01 12 57109810 57109810 G A NACA Missense_Mutation p.A682V 0.41 tolerated_low_confidence(0.05) benign(0.413) TCGA-CM-6171-01 12 57626546 57626546 G T SHMT2 Silent p.V259V 0.48 TCGA-CM-6171-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.41 TCGA-CM-6171-01 12 57884062 57884062 C T MARS Missense_Mutation p.T188I 0.51 tolerated(0.21) benign(0.007) TCGA-CM-6171-01 12 57910779 57910788 CTCTGTTTCC - DDIT3 Frame_Shift_Del p.R128Lfs*13 0.36 TCGA-CM-6171-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.36 TCGA-CM-6171-01 12 62708651 62708651 C T USP15 Silent p.N143N 0.47 TCGA-CM-6171-01 12 62798030 62798030 T - USP15 Frame_Shift_Del p.P943Lfs*17 0.33 TCGA-CM-6171-01 12 6657973 6657974 - C IFFO1 Frame_Shift_Ins p.R367Afs*19 0.40 TCGA-CM-6171-01 12 6672270 6672270 T G NOP2 Missense_Mutation p.T352P 0.42 deleterious(0) probably_damaging(0.996) TCGA-CM-6171-01 12 68716942 68716942 A G MDM1 Missense_Mutation p.F238L 0.36 deleterious(0.04) possibly_damaging(0.839) TCGA-CM-6171-01 12 7069093 7069093 C T PTPN6 Silent p.A455A 0.45 TCGA-CM-6171-01 12 71077911 71077911 T - PTPRR Frame_Shift_Del p.N498Mfs*25 0.33 TCGA-CM-6171-01 12 7526067 7526067 G A CD163L1 Silent p.S1193S 0.37 TCGA-CM-6171-01 12 77253335 77253335 T C CSRP2 Missense_Mutation p.Y166C 0.43 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 12 80735860 80735860 C A OTOGL Missense_Mutation p.P1719H 0.44 tolerated(0.1) possibly_damaging(0.521) TCGA-CM-6171-01 12 80982133 80982133 T C PTPRQ Missense_Mutation p.L1500S 0.08 deleterious(0) probably_damaging(0.991) TCGA-CM-6171-01 12 83250791 83250791 G A TMTC2 Missense_Mutation p.R29H 0.32 deleterious(0) probably_damaging(0.974) TCGA-CM-6171-01 12 8666271 8666271 A - CLEC4D 5'UTR 0.42 TCGA-CM-6171-01 12 88381685 88381685 C T C12orf50 Silent p.T253T 0.47 TCGA-CM-6171-01 12 8998703 8998703 C T A2ML1 Missense_Mutation p.T523I 0.38 tolerated(0.06) benign(0.045) TCGA-CM-6171-01 12 92821877 92821877 C T CLLU1OS Missense_Mutation p.A16T 0.45 tolerated_low_confidence(1) possibly_damaging(0.682) TCGA-CM-6171-01 12 95603693 95603693 G T FGD6 Missense_Mutation p.P456H 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.557) TCGA-CM-6171-01 12 96350595 96350595 G A AMDHD1 Missense_Mutation p.A148T 0.43 tolerated(0.29) benign(0.082) TCGA-CM-6171-01 12 99076932 99076932 T C APAF1 Silent p.S686S 0.43 TCGA-CM-6171-01 12 99548275 99548275 C A ANKS1B Intron 0.55 TCGA-CM-6171-01 13 103343244 103343244 A G METTL21C Silent p.T67T 0.38 TCGA-CM-6171-01 13 103506210 103506210 T C BIVM-ERCC5 Missense_Mutation p.F549S 0.37 deleterious(0.02) possibly_damaging(0.794) TCGA-CM-6171-01 13 111303424 111303424 G - CARS2 Frame_Shift_Del p.D338Mfs*44 0.36 TCGA-CM-6171-01 13 114537599 114537599 G A GAS6 Silent p.N253N 0.55 TCGA-CM-6171-01 13 115028411 115028411 C T CDC16 Silent p.N478N 0.42 TCGA-CM-6171-01 13 19997286 19997286 A G TPTE2 Silent p.N495N 0.38 TCGA-CM-6171-01 13 21751206 21751206 A G MRP63 Missense_Mutation p.M51V 0.28 tolerated(0.13) benign(0.003) TCGA-CM-6171-01 13 25670379 25670379 G A PABPC3 Missense_Mutation p.V15M 0.36 deleterious(0) probably_damaging(0.997) TCGA-CM-6171-01 13 25831966 25831966 G A MTMR6 Missense_Mutation p.L293F 0.40 tolerated(0.12) benign(0.275) TCGA-CM-6171-01 13 25905922 25905922 A G NUPL1 Intron 0.67 TCGA-CM-6171-01 13 28367819 28367819 C T GSX1 Missense_Mutation p.R177C 0.43 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 13 32977013 32977013 A - N4BP2L1 3'UTR 0.29 TCGA-CM-6171-01 13 35615164 35615164 T A NBEA Missense_Mutation p.V130E 0.37 tolerated(0.15) possibly_damaging(0.675) TCGA-CM-6171-01 13 37012925 37012925 C A CCNA1 Missense_Mutation p.L272M 0.34 deleterious(0.04) probably_damaging(1) TCGA-CM-6171-01 13 42144706 42144706 C T VWA8 Missense_Mutation p.R1836Q 0.35 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 13 42303718 42303719 - T VWA8 Frame_Shift_Ins p.N866Kfs*18 0.34 TCGA-CM-6171-01 13 44948194 44948194 C T SERP2 Silent p.N11N 0.32 TCGA-CM-6171-01 13 50591419 50591419 A - TRIM13 3'Flank 0.29 TCGA-CM-6171-01 13 51503615 51503615 A C RNASEH2B Missense_Mutation p.E47D 0.09 tolerated(0.14) benign(0.003) TCGA-CM-6171-01 13 52524529 52524529 C T ATP7B Silent p.E818E 0.46 TCGA-CM-6171-01 13 58206938 58206938 C A PCDH17 Silent p.T86T 0.32 TCGA-CM-6171-01 13 58207774 58207774 C T PCDH17 Missense_Mutation p.A365V 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-CM-6171-01 13 58208862 58208862 G A PCDH17 Missense_Mutation p.V728I 0.48 tolerated(0.2) benign(0.049) TCGA-CM-6171-01 13 67800073 67800073 C T PCDH9 Missense_Mutation p.V834I 0.38 tolerated(0.11) possibly_damaging(0.541) TCGA-CM-6171-01 13 78335188 78335188 C T SLAIN1 Missense_Mutation p.S383L 0.38 deleterious(0) possibly_damaging(0.776) TCGA-CM-6171-01 13 78492595 78492595 C T EDNRB Silent p.P128P 0.38 TCGA-CM-6171-01 14 101005155 101005155 C T BEGAIN Silent p.E311E 0.42 TCGA-CM-6171-01 14 101347457 101347457 G A RTL1 Silent p.H1223H 0.44 TCGA-CM-6171-01 14 101348367 101348367 G A RTL1 Missense_Mutation p.A920V 0.44 tolerated(0.58) benign(0) TCGA-CM-6171-01 14 102495979 102495979 G A DYNC1H1 Missense_Mutation p.R3191Q 0.42 probably_damaging(0.965) TCGA-CM-6171-01 14 102508813 102508813 G A DYNC1H1 Missense_Mutation p.R4123Q 0.47 probably_damaging(1) TCGA-CM-6171-01 14 102548120 102548120 C A HSP90AA1 Missense_Mutation p.A832S 0.38 tolerated_low_confidence(0.08) unknown(0) TCGA-CM-6171-01 14 102931655 102931655 C G TECPR2 Intron 0.46 TCGA-CM-6171-01 14 102964034 102964034 C T TECPR2 Silent p.P1353P 0.47 TCGA-CM-6171-01 14 103416895 103416895 G - CDC42BPB Frame_Shift_Del p.Q1073Rfs*38 0.27 TCGA-CM-6171-01 14 103592930 103592930 G A TNFAIP2 Missense_Mutation p.V46I 0.34 tolerated(0.2) benign(0.008) TCGA-CM-6171-01 14 104056660 104056660 C A APOPT1 3'UTR 0.28 TCGA-CM-6171-01 14 104642560 104642560 C - KIF26A Frame_Shift_Del p.P1147Lfs*101 0.31 TCGA-CM-6171-01 14 104643040 104643040 G A KIF26A Silent p.P1305P 0.45 TCGA-CM-6171-01 14 105353500 105353500 C - CEP170B Frame_Shift_Del p.Q977Sfs*55 0.35 TCGA-CM-6171-01 14 106054615 106054615 T C IGHA2 Missense_Mutation p.T40A 0.39 deleterious(0.02) benign(0.172) TCGA-CM-6171-01 14 106209325 106209325 C T IGHG1 Silent p.L28L 0.32 TCGA-CM-6171-01 14 106494298 106494298 G A IGHV2-5 Missense_Mutation p.A65V 0.39 deleterious(0.02) benign(0.01) TCGA-CM-6171-01 14 106667805 106667805 C T IGHV3-20 Missense_Mutation p.A43T 0.34 deleterious_low_confidence(0.03) benign(0.433) TCGA-CM-6171-01 14 106780640 106780640 C A IGHV4-28 Missense_Mutation p.G75V 0.18 deleterious(0) probably_damaging(0.954) TCGA-CM-6171-01 14 107179016 107179016 C T IGHV2-70 Missense_Mutation p.C54Y 0.24 tolerated(1) benign(0.051) TCGA-CM-6171-01 14 21543088 21543088 T C ARHGEF40 Missense_Mutation p.L400P 0.43 tolerated(0.1) possibly_damaging(0.871) TCGA-CM-6171-01 14 21558924 21558924 C T ZNF219 Missense_Mutation p.R647H 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-CM-6171-01 14 21623424 21623424 G A OR5AU1 Missense_Mutation p.A254V 0.39 tolerated(0.77) benign(0.1) TCGA-CM-6171-01 14 22592223 22592223 A G TRAV26-1 Missense_Mutation p.Y103C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6171-01 14 23374223 23374223 T C RBM23 Splice_Site p.X243_splice 0.36 TCGA-CM-6171-01 14 23450590 23450590 C T AJUBA Missense_Mutation p.G296R 0.46 tolerated(0.25) probably_damaging(0.98) TCGA-CM-6171-01 14 23451140 23451140 C T AJUBA Silent p.E112E 0.32 TCGA-CM-6171-01 14 23569238 23569238 G A C14orf119 3'UTR 0.42 TCGA-CM-6171-01 14 23744642 23744642 C - HOMEZ 3'UTR 0.25 TCGA-CM-6171-01 14 23899003 23899003 C T MYH7 Silent p.A373A 0.41 TCGA-CM-6171-01 14 24517430 24517430 A G LRRC16B 5'Flank 0.38 TCGA-CM-6171-01 14 24787944 24787944 G A ADCY4 Silent p.A999A 0.42 TCGA-CM-6171-01 14 24879175 24879175 C A NYNRIN Silent p.P725P 0.43 TCGA-CM-6171-01 14 24898086 24898087 - C CBLN3 Frame_Shift_Ins p.P59Afs*25 0.33 TCGA-CM-6171-01 14 33292757 33292757 C A AKAP6 Missense_Mutation p.T1913N 0.43 deleterious(0.03) benign(0.032) TCGA-CM-6171-01 14 36840753 36840753 T C DPPA3P2 RNA 0.40 TCGA-CM-6171-01 14 36986559 36986559 A G NKX2-1 Missense_Mutation p.L377P 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-6171-01 14 45373676 45373676 T C C14orf28 Silent p.H231H 0.42 TCGA-CM-6171-01 14 51382662 51382662 C T PYGL Missense_Mutation p.A374T 0.33 deleterious(0.03) possibly_damaging(0.695) TCGA-CM-6171-01 14 53010311 53010312 - T TXNDC16 5'UTR 0.28 TCGA-CM-6171-01 14 53527900 53527900 G A DDHD1 Missense_Mutation p.R596W 0.30 deleterious(0) possibly_damaging(0.582) TCGA-CM-6171-01 14 55226911 55226911 G A SAMD4A Silent p.P403P 0.38 TCGA-CM-6171-01 14 65007730 65007730 G A HSPA2 Missense_Mutation p.A55T 0.39 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-CM-6171-01 14 65009185 65009185 G A HSPA2 Missense_Mutation p.A540T 0.49 tolerated_low_confidence(0.32) benign(0.009) TCGA-CM-6171-01 14 65239629 65239629 G A SPTB Missense_Mutation p.A1741V 0.32 tolerated(0.12) benign(0.005) TCGA-CM-6171-01 14 67805274 67805274 C A ATP6V1D 3'UTR 0.49 TCGA-CM-6171-01 14 68242757 68242757 T C ZFYVE26 Missense_Mutation p.M1681V 0.41 deleterious(0) benign(0.19) TCGA-CM-6171-01 14 73614807 73614807 G A PSEN1 Missense_Mutation p.R27H 0.44 tolerated(0.14) benign(0) TCGA-CM-6171-01 14 74035990 74035990 A G ACOT2 Missense_Mutation p.R16G 0.37 deleterious_low_confidence(0.01) benign(0.001) TCGA-CM-6171-01 14 74203739 74203739 G A ELMSAN1 Missense_Mutation p.R571W 0.42 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 14 75266198 75266198 C T YLPM1 Missense_Mutation p.R1400W 0.30 probably_damaging(0.995) TCGA-CM-6171-01 14 75520286 75520286 C T ACYP1 Missense_Mutation p.G54D 0.41 deleterious(0) possibly_damaging(0.583) TCGA-CM-6171-01 14 79181448 79181448 C T NRXN3 Silent p.T297T 0.33 TCGA-CM-6171-01 14 91007748 91007748 G A TTC7B Silent p.P832P 0.47 TCGA-CM-6171-01 14 91340015 91340015 G A RPS6KA5 Silent p.S707S 0.43 TCGA-CM-6171-01 14 91340034 91340034 G A RPS6KA5 Missense_Mutation p.P701L 0.34 deleterious(0) possibly_damaging(0.51) TCGA-CM-6171-01 14 91360687 91360687 C - RPS6KA5 Intron 0.32 TCGA-CM-6171-01 14 91700731 91700731 G A GPR68 Missense_Mutation p.R222C 0.48 deleterious(0) probably_damaging(0.935) TCGA-CM-6171-01 14 92597416 92597416 T - CPSF2 Frame_Shift_Del p.L31Yfs*18 0.33 TCGA-CM-6171-01 14 93022098 93022098 C T RIN3 Missense_Mutation p.P16L 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-CM-6171-01 14 93760728 93760728 C A BTBD7 Missense_Mutation p.R213M 0.41 deleterious(0.03) probably_damaging(0.957) TCGA-CM-6171-01 14 95056618 95056618 T C SERPINA5 Missense_Mutation p.L287P 0.37 deleterious(0) probably_damaging(0.996) TCGA-CM-6171-01 14 96761299 96761299 A - ATG2B Frame_Shift_Del p.F1808Lfs*28 0.28 TCGA-CM-6171-01 14 96794874 96794874 T - ATG2B Splice_Site p.X659_splice 0.17 TCGA-CM-6171-01 15 100516344 100516344 G A ADAMTS17 Silent p.C1011C 0.67 TCGA-CM-6171-01 15 101597173 101597173 C T LRRK1 Missense_Mutation p.P1482L 0.48 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 15 102241338 102241338 A - TARSL2 Frame_Shift_Del p.F424Sfs*67 0.30 TCGA-CM-6171-01 15 20739969 20739969 C T GOLGA6L6 Missense_Mutation p.R594Q 0.27 unknown(0) TCGA-CM-6171-01 15 23889280 23889280 G A MAGEL2 Missense_Mutation p.L601F 0.51 deleterious(0.03) benign(0.118) TCGA-CM-6171-01 15 25585287 25585287 C A UBE3A Nonsense_Mutation p.G818* 0.41 TCGA-CM-6171-01 15 31217359 31217359 G A FAN1 Silent p.A734A 0.53 TCGA-CM-6171-01 15 34393917 34393917 C A EMC7 Nonsense_Mutation p.G42* 0.43 TCGA-CM-6171-01 15 34640673 34640673 C T NUTM1 Missense_Mutation p.P174S 0.44 tolerated(0.33) benign(0.119) TCGA-CM-6171-01 15 40588570 40588570 C T PLCB2 Silent p.T541T 0.52 TCGA-CM-6171-01 15 41063454 41063454 G - C15orf62 3'UTR 0.56 TCGA-CM-6171-01 15 41794645 41794645 C T ITPKA Nonsense_Mutation p.R352* 0.40 TCGA-CM-6171-01 15 42149156 42149156 G A SPTBN5 Silent p.D2901D 0.39 TCGA-CM-6171-01 15 43335484 43335484 A G UBR1 Missense_Mutation p.L593S 0.36 deleterious(0.04) possibly_damaging(0.562) TCGA-CM-6171-01 15 44943969 44943969 C T SPG11 Missense_Mutation p.M392I 0.38 tolerated(0.52) benign(0.078) TCGA-CM-6171-01 15 45709506 45709506 C T SPATA5L1 Missense_Mutation p.A626V 0.41 deleterious(0.02) possibly_damaging(0.529) TCGA-CM-6171-01 15 48762885 48762885 G A FBN1 Missense_Mutation p.R1469C 0.49 probably_damaging(1) TCGA-CM-6171-01 15 48780362 48780362 G A FBN1 Silent p.C1095C 0.46 TCGA-CM-6171-01 15 49620885 49620885 T C GALK2 3'Flank 0.39 TCGA-CM-6171-01 15 50782025 50782025 C T USP8 Nonsense_Mutation p.R640* 0.43 TCGA-CM-6171-01 15 51839456 51839456 C T DMXL2 Silent p.S239S 0.43 TCGA-CM-6171-01 15 52446143 52446143 C T GNB5 Silent p.S123S 0.37 TCGA-CM-6171-01 15 55759241 55759241 A T DYX1C1 Missense_Mutation p.I175N 0.36 tolerated(0.4) benign(0.005) TCGA-CM-6171-01 15 58001435 58001435 G A POLR2M Missense_Mutation p.A213T 0.40 tolerated(1) benign(0.002) TCGA-CM-6171-01 15 59523958 59523958 C T MYO1E Silent p.P151P 0.42 TCGA-CM-6171-01 15 63351865 63351865 C T TPM1 Missense_Mutation p.R160C 0.32 deleterious(0) probably_damaging(0.976) TCGA-CM-6171-01 15 63970405 63970405 T - HERC1 Frame_Shift_Del p.M2237* 0.28 TCGA-CM-6171-01 15 64967353 64967353 G T ZNF609 Missense_Mutation p.G767V 0.36 tolerated(0.69) benign(0.022) TCGA-CM-6171-01 15 65394757 65394757 T C UBAP1L Missense_Mutation p.Q129R 0.15 tolerated(0.51) benign(0.011) TCGA-CM-6171-01 15 65490135 65490135 C A CILP Missense_Mutation p.G830V 0.31 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 15 65678360 65678361 - CG IGDCC4 Frame_Shift_Ins p.G997Rfs*74 0.41 TCGA-CM-6171-01 15 65918212 65918212 C T SLC24A1 Silent p.F598F 0.40 TCGA-CM-6171-01 15 65983487 65983487 A G DENND4A Missense_Mutation p.F1148L 0.38 tolerated(0.68) benign(0.001) TCGA-CM-6171-01 15 67457639 67457640 - C SMAD3 Frame_Shift_Ins p.L153Tfs*13 0.29 TCGA-CM-6171-01 15 67479712 67479712 T C SMAD3 Missense_Mutation p.L340P 0.36 deleterious(0.01) probably_damaging(1) TCGA-CM-6171-01 15 68486345 68486347 CTC - CALML4 3'UTR 0.42 TCGA-CM-6171-01 15 68603392 68603392 G A ITGA11 Silent p.G1038G 0.40 TCGA-CM-6171-01 15 69737165 69737165 C T KIF23 Missense_Mutation p.R806C 0.45 tolerated(0.08) possibly_damaging(0.762) TCGA-CM-6171-01 15 70344856 70344856 G A TLE3 Missense_Mutation p.S664L 0.45 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 15 70349945 70349945 G A TLE3 Silent p.F371F 0.29 TCGA-CM-6171-01 15 70352874 70352874 G A TLE3 Nonsense_Mutation p.R237* 0.31 TCGA-CM-6171-01 15 70356806 70356806 C T TLE3 Missense_Mutation p.R194K 0.26 tolerated(0.32) benign(0) TCGA-CM-6171-01 15 70366913 70366913 C T TLE3 Missense_Mutation p.A111T 0.41 deleterious(0.01) possibly_damaging(0.685) TCGA-CM-6171-01 15 72546854 72546856 TTC - PARP6 In_Frame_Del p.K377del 0.38 TCGA-CM-6171-01 15 72668272 72668272 T C HEXA Silent p.A14A 0.40 TCGA-CM-6171-01 15 73067307 73067307 A G ADPGK Missense_Mutation p.F122S 0.20 tolerated(0.11) benign(0.143) TCGA-CM-6171-01 15 73542036 73542036 A G NEO1 Missense_Mutation p.D623G 0.35 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 15 73615951 73615951 C T HCN4 Missense_Mutation p.R828Q 0.39 tolerated(0.08) unknown(0) TCGA-CM-6171-01 15 73616517 73616517 C T HCN4 Missense_Mutation p.V686M 0.43 deleterious(0) unknown(0) TCGA-CM-6171-01 15 74429041 74429041 G A ISLR2 3'UTR 0.48 TCGA-CM-6171-01 15 74429078 74429079 - C ISLR2 3'UTR 0.25 TCGA-CM-6171-01 15 74573040 74573040 G A CCDC33 Silent p.Q307Q 0.19 TCGA-CM-6171-01 15 74836212 74836212 G A ARID3B 5'UTR 0.44 TCGA-CM-6171-01 15 75122512 75122512 C T CPLX3 Silent p.D98D 0.46 TCGA-CM-6171-01 15 75673043 75673043 G A SIN3A Nonsense_Mutation p.R1104* 0.24 TCGA-CM-6171-01 15 76578711 76578711 C T ETFA Splice_Site p.X188_splice 0.35 TCGA-CM-6171-01 15 77473352 77473352 G T PEAK1 Missense_Mutation p.A306D 0.40 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 15 77906571 77906571 C T LINGO1 Missense_Mutation p.A560T 0.32 deleterious(0.01) possibly_damaging(0.657) TCGA-CM-6171-01 15 79296278 79296278 G A RASGRF1 Missense_Mutation p.A788V 0.42 tolerated_low_confidence(0.19) benign(0.023) TCGA-CM-6171-01 15 79320142 79320142 C T RASGRF1 Missense_Mutation p.R441H 0.37 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 15 80191307 80191307 G A ST20 Missense_Mutation p.T69M 0.41 tolerated_low_confidence(0.13) benign(0) TCGA-CM-6171-01 15 83395040 83395040 G A AC105339.2 3'Flank 0.43 TCGA-CM-6171-01 15 85370763 85370763 G A ALPK3 Silent p.P279P 0.42 TCGA-CM-6171-01 15 86213023 86213023 C G AKAP13 Missense_Mutation p.S1692C 0.06 deleterious(0) probably_damaging(0.971) TCGA-CM-6171-01 15 89861822 89861822 C A POLG Missense_Mutation p.E1144D 0.39 tolerated(0.06) possibly_damaging(0.676) TCGA-CM-6171-01 15 91347484 91347484 A - BLM Frame_Shift_Del p.K1217Nfs*62 0.27 TCGA-CM-6171-01 15 91453730 91453730 G - MAN2A2 Splice_Site p.X528_splice 0.41 TCGA-CM-6171-01 15 91456124 91456125 - C MAN2A2 Frame_Shift_Ins p.V832Rfs*6 0.32 TCGA-CM-6171-01 15 91478586 91478586 C A UNC45A Missense_Mutation p.P11H 0.43 deleterious_low_confidence(0.01) benign(0.035) TCGA-CM-6171-01 15 91510297 91510297 C - PRC1 3'UTR 0.18 TCGA-CM-6171-01 15 92669369 92669369 T C SLCO3A1 Missense_Mutation p.L418P 0.32 tolerated(0.18) probably_damaging(0.951) TCGA-CM-6171-01 15 99491831 99491831 G A IGF1R Missense_Mutation p.A1206T 0.41 tolerated(0.32) possibly_damaging(0.608) TCGA-CM-6171-01 16 1033872 1033872 C T SOX8 Silent p.G189G 0.14 TCGA-CM-6171-01 16 11217625 11217625 C T CLEC16A Silent p.D765D 0.47 TCGA-CM-6171-01 16 11856530 11856530 C T ZC3H7A Silent p.A692A 0.43 TCGA-CM-6171-01 16 1262091 1262091 G A CACNA1H Missense_Mutation p.R1571Q 0.49 deleterious(0.04) probably_damaging(0.99) TCGA-CM-6171-01 16 1506149 1506149 G A CLCN7 Missense_Mutation p.A294V 0.29 deleterious(0) probably_damaging(0.993) TCGA-CM-6171-01 16 15225392 15225392 G A RP11-1186N24.5 RNA 0.37 TCGA-CM-6171-01 16 15501835 15501835 G A MPV17L Missense_Mutation p.A153T 0.49 tolerated(1) benign(0.001) TCGA-CM-6171-01 16 15809040 15809040 G A MYH11 Missense_Mutation p.A1872V 0.45 benign(0.151) TCGA-CM-6171-01 16 16200653 16200653 G A ABCC1 Missense_Mutation p.A932T 0.49 tolerated(0.47) benign(0.003) TCGA-CM-6171-01 16 16230394 16230394 G A ABCC1 Silent p.S1395S 0.44 TCGA-CM-6171-01 16 1749123 1749123 C T HN1L 3'UTR 0.40 TCGA-CM-6171-01 16 18549945 18549945 A G NOMO2 Missense_Mutation p.Y375H 0.39 deleterious(0.01) probably_damaging(0.977) TCGA-CM-6171-01 16 1878291 1878291 A G FAHD1 Intron 0.41 TCGA-CM-6171-01 16 2034429 2034429 G - GFER Frame_Shift_Del p.C71Afs*79 0.35 TCGA-CM-6171-01 16 20634805 20634805 C T ACSM1 3'UTR 0.40 TCGA-CM-6171-01 16 20871525 20871525 G T DCUN1D3 Missense_Mutation p.L200M 0.41 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 16 2149924 2149926 GAG - PKD1 In_Frame_Del p.L3287del 0.24 TCGA-CM-6171-01 16 2154595 2154595 G A PKD1 Missense_Mutation p.H2689Y 0.49 benign(0.37) TCGA-CM-6171-01 16 2158574 2158574 C T PKD1 Silent p.P2198P 0.44 TCGA-CM-6171-01 16 2331033 2331033 C T ABCA3 Missense_Mutation p.G1452R 0.33 tolerated(0.52) benign(0.001) TCGA-CM-6171-01 16 2339562 2339562 T C ABCA3 Missense_Mutation p.Q858R 0.37 tolerated(0.1) benign(0.081) TCGA-CM-6171-01 16 23581803 23581803 G A UBFD1 Silent p.A274A 0.41 TCGA-CM-6171-01 16 24043458 24043459 - C PRKCB Frame_Shift_Ins p.R99Pfs*7 0.32 TCGA-CM-6171-01 16 24835130 24835130 A C TNRC6A 3'UTR 0.42 TCGA-CM-6171-01 16 27514180 27514180 G A GTF3C1 Missense_Mutation p.T636M 0.44 deleterious(0.01) probably_damaging(0.98) TCGA-CM-6171-01 16 2813850 2813850 G C SRRM2 Missense_Mutation p.E1107D 0.29 unknown(0) TCGA-CM-6171-01 16 28330479 28330479 C T SBK1 Silent p.Y130Y 0.48 TCGA-CM-6171-01 16 28949002 28949003 GT - CD19 Splice_Site p.X477_splice 0.41 TCGA-CM-6171-01 16 30736370 30736371 - C SRCAP Frame_Shift_Ins p.P1879Tfs*21 0.38 TCGA-CM-6171-01 16 30770794 30770794 C T C16orf93 Intron 0.46 TCGA-CM-6171-01 16 31123273 31123273 C T BCKDK Missense_Mutation p.T340I 0.33 tolerated(0.1) benign(0.171) TCGA-CM-6171-01 16 31388228 31388228 G A ITGAX Missense_Mutation p.G873S 0.47 tolerated(0.09) probably_damaging(0.999) TCGA-CM-6171-01 16 3646191 3646191 G A SLX4 Silent p.P629P 0.50 TCGA-CM-6171-01 16 3789646 3789646 C T CREBBP Missense_Mutation p.V1405M 0.33 unknown(0) TCGA-CM-6171-01 16 48180423 48180423 G T ABCC12 5'UTR 0.42 TCGA-CM-6171-01 16 50334705 50334705 G A ADCY7 Missense_Mutation p.G386R 0.36 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 16 56904090 56904090 C T SLC12A3 Silent p.A228A 0.41 TCGA-CM-6171-01 16 56914117 56914117 C T SLC12A3 Missense_Mutation p.R507C 0.50 deleterious(0) probably_damaging(0.992) TCGA-CM-6171-01 16 58318534 58318534 C T PRSS54 Missense_Mutation p.C205Y 0.30 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 16 58537827 58537827 A G NDRG4 Intron 0.30 TCGA-CM-6171-01 16 58756156 58756156 A T GOT2 Missense_Mutation p.N91K 0.46 tolerated(0.82) benign(0.001) TCGA-CM-6171-01 16 599722 599722 G A CAPN15 Silent p.T650T 0.33 TCGA-CM-6171-01 16 66643680 66643680 C T CMTM3 Intron 0.42 TCGA-CM-6171-01 16 67289320 67289320 T G SLC9A5 Missense_Mutation p.F227V 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6171-01 16 69294072 69294072 A C SNTB2 Missense_Mutation p.Q305P 0.41 deleterious(0.04) possibly_damaging(0.527) TCGA-CM-6171-01 16 70867985 70867985 T C HYDIN Missense_Mutation p.K4495R 0.29 possibly_damaging(0.801) TCGA-CM-6171-01 16 71767046 71767046 C T AP1G1 Missense_Mutation p.R798Q 0.43 deleterious(0) possibly_damaging(0.889) TCGA-CM-6171-01 16 71889845 71889845 G T ATXN1L 3'UTR 0.40 TCGA-CM-6171-01 16 72011157 72011157 T C PKD1L3 RNA 0.29 TCGA-CM-6171-01 16 72153124 72153124 C T PMFBP1 3'UTR 0.47 TCGA-CM-6171-01 16 723619 723619 C A RHOT2 3'UTR 0.32 TCGA-CM-6171-01 16 72821365 72821365 C T ZFHX3 Missense_Mutation p.A3604T 0.31 unknown(0) TCGA-CM-6171-01 16 72991336 72991336 C T ZFHX3 Silent p.T903T 0.40 TCGA-CM-6171-01 16 775266 775266 C T CCDC78 Missense_Mutation p.E155K 0.31 tolerated(0.64) benign(0.001) TCGA-CM-6171-01 16 77759461 77759461 T C NUDT7 Missense_Mutation p.F57L 0.38 tolerated(0.74) benign(0.047) TCGA-CM-6171-01 16 81904511 81904511 A - PLCG2 Frame_Shift_Del p.K208Nfs*55 0.29 TCGA-CM-6171-01 16 81916943 81916943 G T PLCG2 Missense_Mutation p.Q254H 0.37 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 16 82182422 82182422 T G MPHOSPH6 Silent p.R133R 0.37 TCGA-CM-6171-01 16 82660732 82660732 T C CDH13 Missense_Mutation p.S24P 0.42 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-CM-6171-01 16 86602202 86602202 G T FOXC2 Missense_Mutation p.A421S 0.70 tolerated(0.3) probably_damaging(0.932) TCGA-CM-6171-01 16 88504203 88504203 G - ZNF469 Frame_Shift_Del p.R3417Gfs*56 0.54 TCGA-CM-6171-01 16 88594444 88594444 C T ZFPM1 Silent p.D170D 0.36 TCGA-CM-6171-01 16 89167634 89167634 C A ACSF3 Missense_Mutation p.P182Q 0.38 tolerated(0.2) benign(0.049) TCGA-CM-6171-01 16 89349264 89349264 G A ANKRD11 Missense_Mutation p.T1229M 0.38 benign(0.003) TCGA-CM-6171-01 16 89349609 89349609 T C ANKRD11 Missense_Mutation p.Y1114C 0.38 probably_damaging(0.998) TCGA-CM-6171-01 17 11461312 11461312 G A SHISA6 Silent p.T449T 0.33 TCGA-CM-6171-01 17 12032541 12032541 C T MAP2K4 Missense_Mutation p.P326L 0.33 deleterious(0) probably_damaging(0.97) TCGA-CM-6171-01 17 15554948 15554951 TCTT - RP11-385D13.1 5'UTR 0.36 TCGA-CM-6171-01 17 1564595 1564595 C T PRPF8 Nonsense_Mutation p.W1436* 0.36 TCGA-CM-6171-01 17 17061804 17061804 A G MPRIP Missense_Mutation p.T512A 0.41 tolerated(0.14) benign(0.006) TCGA-CM-6171-01 17 17078651 17078651 G A MPRIP Silent p.T878T 0.42 TCGA-CM-6171-01 17 17697442 17697442 C T RAI1 Missense_Mutation p.P394S 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-CM-6171-01 17 17750977 17750977 C T TOM1L2 Missense_Mutation p.R499Q 0.43 tolerated(0.11) benign(0.015) TCGA-CM-6171-01 17 18087929 18087929 G A ALKBH5 Silent p.V124V 0.09 TCGA-CM-6171-01 17 18110177 18110177 C T ALKBH5 Silent p.S300S 0.35 TCGA-CM-6171-01 17 20107711 20107712 AG - SPECC1 Frame_Shift_Del p.R119Vfs*40 0.12 TCGA-CM-6171-01 17 21319827 21319827 G A KCNJ12 Silent p.E391E 0.17 TCGA-CM-6171-01 17 2290086 2290087 - G MNT 3'UTR 0.48 TCGA-CM-6171-01 17 263171 263171 G A C17orf97 Silent p.P179P 0.34 TCGA-CM-6171-01 17 26603723 26603725 TTC - AC061975.8 5'Flank 0.42 TCGA-CM-6171-01 17 26800782 26800784 TTC - SLC13A2 In_Frame_Del p.F19del 0.61 TCGA-CM-6171-01 17 26850960 26850960 C T FOXN1 5'UTR 0.48 TCGA-CM-6171-01 17 26919469 26919469 G T SPAG5 Missense_Mutation p.P265T 0.48 deleterious_low_confidence(0.02) benign(0.318) TCGA-CM-6171-01 17 26939073 26939073 G A SGK494 Nonsense_Mutation p.R228* 0.34 TCGA-CM-6171-01 17 27085680 27085680 G T FAM222B Missense_Mutation p.P433T 0.44 tolerated(0.05) probably_damaging(0.922) TCGA-CM-6171-01 17 27277237 27277238 - G PHF12 Frame_Shift_Ins p.K32Qfs*13 0.39 TCGA-CM-6171-01 17 27579135 27579137 GAG - CRYBA1 In_Frame_Del p.G91del 0.49 TCGA-CM-6171-01 17 28003848 28003848 G A SSH2 Nonsense_Mutation p.Q175* 0.33 TCGA-CM-6171-01 17 28384852 28384852 T - EFCAB5 Frame_Shift_Del p.F843Lfs*13 0.35 TCGA-CM-6171-01 17 28525307 28525307 G A SLC6A4 3'UTR 0.37 TCGA-CM-6171-01 17 2929351 2929351 C T RAP1GAP2 Nonsense_Mutation p.Q601* 0.42 TCGA-CM-6171-01 17 30221755 30221755 C T UTP6 Missense_Mutation p.R74H 0.40 tolerated(0.14) benign(0.159) TCGA-CM-6171-01 17 32953243 32953245 CTT - TMEM132E In_Frame_Del p.F57del 0.30 TCGA-CM-6171-01 17 33984659 33984659 C T AP2B1 Missense_Mutation p.T613M 0.42 tolerated(0.11) benign(0.181) TCGA-CM-6171-01 17 3419817 3419817 A G TRPV3 Missense_Mutation p.L711P 0.36 deleterious(0) probably_damaging(0.929) TCGA-CM-6171-01 17 35603794 35603794 A G ACACA Missense_Mutation p.I803T 0.32 tolerated(0.51) benign(0.001) TCGA-CM-6171-01 17 36997521 36997521 G A C17orf98 Missense_Mutation p.P41L 0.38 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 17 37667785 37667785 C T CDK12 Silent p.R890R 0.40 TCGA-CM-6171-01 17 37762571 37762571 G A NEUROD2 Silent p.D94D 0.43 TCGA-CM-6171-01 17 37785796 37785796 A G PPP1R1B Missense_Mutation p.E49G 0.28 deleterious(0.03) possibly_damaging(0.761) TCGA-CM-6171-01 17 37879688 37879688 G A ERBB2 Missense_Mutation p.R688Q 0.32 deleterious(0) possibly_damaging(0.638) TCGA-CM-6171-01 17 37922298 37922298 G A IKZF3 Silent p.Y425Y 0.43 TCGA-CM-6171-01 17 38950093 38950093 T G KRT28 Missense_Mutation p.D395A 0.40 deleterious(0.01) benign(0.33) TCGA-CM-6171-01 17 39197254 39197254 G - KRTAP1-1 Frame_Shift_Del p.C133Afs*4 0.51 TCGA-CM-6171-01 17 3921228 3921228 G A ZZEF1 Missense_Mutation p.R2515W 0.34 deleterious(0) possibly_damaging(0.816) TCGA-CM-6171-01 17 39261822 39261822 A G KRTAP4-9 Missense_Mutation p.Q61R 0.44 tolerated(0.34) unknown(0) TCGA-CM-6171-01 17 39645835 39645837 CTT - KRT36 In_Frame_Del p.K94del 0.43 TCGA-CM-6171-01 17 40025824 40025824 A G ACLY Missense_Mutation p.M985T 0.41 tolerated(0.08) benign(0.015) TCGA-CM-6171-01 17 40963564 40963564 T - BECN1 Intron 0.29 TCGA-CM-6171-01 17 41020568 41020568 C T AOC4P RNA 0.14 TCGA-CM-6171-01 17 42449776 42449776 G A ITGA2B Missense_Mutation p.R1026W 0.26 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 17 42636266 42636266 G A FZD2 Missense_Mutation p.V404I 0.49 deleterious(0.02) probably_damaging(0.918) TCGA-CM-6171-01 17 42800341 42800341 C T DBF4B Missense_Mutation p.A59V 0.41 deleterious(0.03) probably_damaging(0.972) TCGA-CM-6171-01 17 43246422 43246422 G A HEXIM2 Missense_Mutation p.R36H 0.37 deleterious_low_confidence(0.03) benign(0) TCGA-CM-6171-01 17 44248710 44248710 T - KANSL1 Frame_Shift_Del p.K267Sfs*12 0.19 TCGA-CM-6171-01 17 4439573 4439573 C T SPNS2 Missense_Mutation p.R487C 0.36 deleterious(0.03) benign(0.004) TCGA-CM-6171-01 17 44771989 44771989 G A NSF Silent p.V445V 0.12 TCGA-CM-6171-01 17 45360910 45360910 G A ITGB3 Missense_Mutation p.R119Q 0.39 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 17 4793937 4793937 G A MINK1 Silent p.Q491Q 0.52 TCGA-CM-6171-01 17 4799618 4799618 A G MINK1 Missense_Mutation p.D1199G 0.46 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 17 48068906 48068906 G - DLX3 Frame_Shift_Del p.P280Rfs*17 0.43 TCGA-CM-6171-01 17 48264185 48264185 G A COL1A1 Silent p.H1210H 0.29 TCGA-CM-6171-01 17 4837486 4837486 C - GP1BA Frame_Shift_Del p.L531Wfs*22 0.30 TCGA-CM-6171-01 17 4859894 4859894 G - ENO3 Frame_Shift_Del p.V367* 0.27 TCGA-CM-6171-01 17 48677149 48677149 C T CACNA1G Missense_Mutation p.R1207C 0.49 tolerated(0.07) benign(0) TCGA-CM-6171-01 17 51900889 51900889 G A KIF2B Silent p.R165R 0.32 TCGA-CM-6171-01 17 52990045 52990045 C T TOM1L1 Nonsense_Mutation p.Q81* 0.31 TCGA-CM-6171-01 17 53852170 53852170 G T PCTP Missense_Mutation p.D177Y 0.40 deleterious(0) probably_damaging(0.997) TCGA-CM-6171-01 17 5445348 5445348 C A NLRP1 Splice_Site p.X843_splice 0.59 TCGA-CM-6171-01 17 55055593 55055593 G A SCPEP1 Missense_Mutation p.A25T 0.33 tolerated(0.65) benign(0.004) TCGA-CM-6171-01 17 56388224 56388224 G A BZRAP1 Silent p.H1144H 0.38 TCGA-CM-6171-01 17 56389824 56389824 G A BZRAP1 Silent p.G786G 0.46 TCGA-CM-6171-01 17 56423571 56423571 G T SUPT4H1 3'UTR 0.33 TCGA-CM-6171-01 17 58539407 58539407 G A APPBP2 Missense_Mutation p.R260C 0.38 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 17 61574337 61574337 C T ACE Missense_Mutation p.P1228S 0.19 tolerated(0.11) possibly_damaging(0.578) TCGA-CM-6171-01 17 66883204 66883204 C T ABCA8 Missense_Mutation p.R1088H 0.34 tolerated(0.09) benign(0.258) TCGA-CM-6171-01 17 67124846 67124846 T C ABCA6 Missense_Mutation p.T345A 0.42 tolerated(0.34) benign(0.06) TCGA-CM-6171-01 17 68173044 68173044 T C KCNJ2 3'UTR 0.45 TCGA-CM-6171-01 17 7158024 7158024 C T ELP5 Missense_Mutation p.T120I 0.43 deleterious(0) probably_damaging(0.921) TCGA-CM-6171-01 17 7221971 7221971 T A NEURL4 Missense_Mutation p.N1236I 0.20 tolerated(0.16) benign(0.015) TCGA-CM-6171-01 17 7240099 7240099 C T ACAP1 Missense_Mutation p.R16C 0.26 deleterious(0.04) possibly_damaging(0.668) TCGA-CM-6171-01 17 72832415 72832415 C - TMEM104 Frame_Shift_Del p.V362Sfs*13 0.33 TCGA-CM-6171-01 17 73727379 73727379 G A ITGB4 Missense_Mutation p.R382Q 0.25 tolerated(0.12) benign(0.119) TCGA-CM-6171-01 17 73753369 73753369 C T ITGB4 Silent p.S1769S 0.45 TCGA-CM-6171-01 17 73780976 73780976 C T UNK Silent p.P5P 0.62 TCGA-CM-6171-01 17 73945658 73945658 T - ACOX1 Frame_Shift_Del p.N501Tfs*6 0.31 TCGA-CM-6171-01 17 74289832 74289832 G A QRICH2 Nonsense_Mutation p.R160* 0.48 TCGA-CM-6171-01 17 74467939 74467939 G A RHBDF2 Silent p.L783L 0.38 TCGA-CM-6171-01 17 74468002 74468002 A G RHBDF2 Missense_Mutation p.C762R 0.27 deleterious(0.02) probably_damaging(0.968) TCGA-CM-6171-01 17 76490759 76490759 G A DNAH17 Silent p.D2048D 0.36 TCGA-CM-6171-01 17 76888495 76888495 C - DDC8 Frame_Shift_Del p.A31Rfs*35 0.39 TCGA-CM-6171-01 17 77081357 77081357 C - ENGASE Frame_Shift_Del p.T547Pfs*14 0.42 TCGA-CM-6171-01 17 7749213 7749213 C A KDM6B Missense_Mutation p.P54H 0.40 unknown(0) TCGA-CM-6171-01 17 77709045 77709045 G A ENPP7 Silent p.T201T 0.32 TCGA-CM-6171-01 17 77768662 77768662 G - CBX8 Frame_Shift_Del p.S315Afs*41 0.24 TCGA-CM-6171-01 17 78091399 78091399 G A GAA Missense_Mutation p.V778M 0.41 tolerated(0.09) possibly_damaging(0.447) TCGA-CM-6171-01 17 78184316 78184316 C T SGSH Missense_Mutation p.A482T 0.39 tolerated(0.06) possibly_damaging(0.533) TCGA-CM-6171-01 17 78219974 78219974 G A SLC26A11 Silent p.S373S 0.37 TCGA-CM-6171-01 17 78617543 78617543 G A RPTOR Missense_Mutation p.G94D 0.45 tolerated(0.1) benign(0.022) TCGA-CM-6171-01 17 78914365 78914365 C T RPTOR Missense_Mutation p.R997C 0.52 tolerated(0.05) benign(0.386) TCGA-CM-6171-01 17 78970842 78970842 C T CHMP6 Silent p.D128D 0.35 TCGA-CM-6171-01 17 7907341 7907341 G A GUCY2D Missense_Mutation p.S298N 0.41 tolerated(1) benign(0.034) TCGA-CM-6171-01 17 79164877 79164877 G A AZI1 Missense_Mutation p.R925C 0.28 deleterious(0) probably_damaging(0.943) TCGA-CM-6171-01 17 79412503 79412503 C A RP11-1055B8.7 Missense_Mutation p.P987T 0.37 benign(0.004) TCGA-CM-6171-01 17 79428910 79428910 C T RP11-1055B8.7 Silent p.S2407S 0.54 TCGA-CM-6171-01 17 79918622 79918622 T C NOTUM Missense_Mutation p.D55G 0.38 deleterious(0.01) possibly_damaging(0.877) TCGA-CM-6171-01 17 79987505 79987507 GGA - LRRC45 In_Frame_Del 0.51 TCGA-CM-6171-01 17 80136355 80136355 C - CCDC57 Frame_Shift_Del p.A501Hfs*12 0.30 TCGA-CM-6171-01 17 8049376 8049376 G A PER1 Silent p.L706L 0.40 TCGA-CM-6171-01 17 81006640 81006640 T C B3GNTL1 Missense_Mutation p.N28D 0.36 deleterious(0.05) possibly_damaging(0.753) TCGA-CM-6171-01 17 8168774 8168774 G A PFAS Missense_Mutation p.V817M 0.51 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 17 8215468 8215468 C T ARHGEF15 Silent p.P37P 0.35 TCGA-CM-6171-01 17 9676174 9676174 C T DHRS7C Missense_Mutation p.D214N 0.46 tolerated(0.27) benign(0.102) TCGA-CM-6171-01 18 12673206 12673206 T - CEP76 3'UTR 0.32 TCGA-CM-6171-01 18 19020268 19020268 C T GREB1L Missense_Mutation p.R330W 0.49 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 18 19102709 19102709 T G GREB1L Missense_Mutation p.L1900R 0.32 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 18 21402267 21402267 C A LAMA3 Missense_Mutation p.R786S 0.35 possibly_damaging(0.614) TCGA-CM-6171-01 18 21481128 21481128 G - LAMA3 Frame_Shift_Del p.E2016Rfs*13 0.21 TCGA-CM-6171-01 18 21530011 21530011 G A LAMA3 Missense_Mutation p.G3177E 0.32 benign(0.109) TCGA-CM-6171-01 18 215424 215427 CTTA - THOC1 Splice_Site p.X560_splice 0.47 TCGA-CM-6171-01 18 24126929 24126929 G T KCTD1 Intron 0.43 TCGA-CM-6171-01 18 25531949 25531949 G A CDH2 3'UTR 0.30 TCGA-CM-6171-01 18 29867126 29867126 A G GAREM Silent p.C478C 0.37 TCGA-CM-6171-01 18 30349973 30349973 C T KLHL14 Silent p.A194A 0.11 TCGA-CM-6171-01 18 31325621 31325621 G A ASXL3 Missense_Mutation p.A1937T 0.47 benign(0.002) TCGA-CM-6171-01 18 31326508 31326508 C T ASXL3 Silent p.D2232D 0.45 TCGA-CM-6171-01 18 31538217 31538217 G A NOL4 Silent p.L408L 0.34 TCGA-CM-6171-01 18 32374115 32374115 T - DTNA Frame_Shift_Del p.Y90Tfs*47 0.37 TCGA-CM-6171-01 18 32888087 32888090 AAAC - ZNF271 RNA 0.20 TCGA-CM-6171-01 18 46284364 46284364 A G CTIF Missense_Mutation p.N220S 0.48 tolerated_low_confidence(0.27) benign(0.001) TCGA-CM-6171-01 18 48256093 48256093 C T MAPK4 Missense_Mutation p.R545C 0.56 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-CM-6171-01 18 48573505 48573506 GA - SMAD4 Frame_Shift_Del p.S32* 0.38 TCGA-CM-6171-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.37 deleterious(0.03) probably_damaging(1) TCGA-CM-6171-01 18 55103500 55103500 C G ONECUT2 Missense_Mutation p.H184Q 0.23 tolerated_low_confidence(0.12) possibly_damaging(0.795) TCGA-CM-6171-01 18 56586333 56586333 G A ZNF532 Missense_Mutation p.A272T 0.26 deleterious(0) possibly_damaging(0.696) TCGA-CM-6171-01 18 5969542 5969542 C T L3MBTL4 Silent p.A497A 0.32 TCGA-CM-6171-01 18 60242611 60242611 G T ZCCHC2 Missense_Mutation p.Q1099H 0.39 deleterious(0.04) benign(0.034) TCGA-CM-6171-01 18 65182256 65182256 T C DSEL 5'UTR 0.37 TCGA-CM-6171-01 18 6977757 6977757 A G LAMA1 Missense_Mutation p.L2105S 0.43 deleterious(0) probably_damaging(0.99) TCGA-CM-6171-01 18 70417342 70417342 G A NETO1 Missense_Mutation p.P499L 0.51 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CM-6171-01 18 72173094 72173094 G A CNDP2 Missense_Mutation p.G72D 0.38 tolerated(0.09) benign(0.029) TCGA-CM-6171-01 18 72347595 72347595 G C ZNF407 Missense_Mutation p.K1540N 0.46 deleterious(0) probably_damaging(0.989) TCGA-CM-6171-01 18 77659614 77659614 C T KCNG2 Missense_Mutation p.P400L 0.56 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 18 8825511 8825511 C T SOGA2 Missense_Mutation p.R1335C 0.40 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 19 1037678 1037678 A G CNN2 Missense_Mutation p.T237A 0.46 tolerated(0.35) benign(0.218) TCGA-CM-6171-01 19 1050999 1050999 G A ABCA7 Missense_Mutation p.A878T 0.56 tolerated(0.39) benign(0.272) TCGA-CM-6171-01 19 10794189 10794189 G A ILF3 Missense_Mutation p.V612I 0.09 tolerated(0.25) benign(0.169) TCGA-CM-6171-01 19 12155504 12155504 A - ZNF878 Frame_Shift_Del p.S238Lfs*5 0.28 TCGA-CM-6171-01 19 12383768 12383768 A G ZNF44 Silent p.S482S 0.43 TCGA-CM-6171-01 19 12918136 12918136 C T RNASEH2A Missense_Mutation p.L106F 0.33 tolerated(0.11) possibly_damaging(0.686) TCGA-CM-6171-01 19 14805885 14805885 G A ZNF333 Missense_Mutation p.A23T 0.47 tolerated(0.58) benign(0.014) TCGA-CM-6171-01 19 15350553 15350553 C T BRD4 Missense_Mutation p.R1121H 0.23 possibly_damaging(0.622) TCGA-CM-6171-01 19 15355177 15355177 C T BRD4 Missense_Mutation p.V816I 0.33 benign(0.103) TCGA-CM-6171-01 19 15484011 15484011 C T AKAP8 Missense_Mutation p.S171N 0.09 tolerated(0.26) benign(0.002) TCGA-CM-6171-01 19 15580411 15580411 C T PGLYRP2 Intron 0.47 TCGA-CM-6171-01 19 15586479 15586479 C T PGLYRP2 Silent p.Q334Q 0.45 TCGA-CM-6171-01 19 15905081 15905081 G A OR10H5 Missense_Mutation p.V75M 0.46 tolerated(0.08) benign(0.069) TCGA-CM-6171-01 19 16040288 16040288 G A CYP4F11 Missense_Mutation p.R108W 0.37 deleterious(0) benign(0.24) TCGA-CM-6171-01 19 1619820 1619820 C T TCF3 Missense_Mutation p.G376S 0.44 tolerated(0.1) benign(0.093) TCGA-CM-6171-01 19 16536023 16536023 G A EPS15L1 Silent p.G221G 0.47 TCGA-CM-6171-01 19 17283622 17283622 C T MYO9B Missense_Mutation p.R664W 0.50 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 19 17330492 17330492 C T USE1 Missense_Mutation p.T217M 0.44 tolerated(0.18) benign(0.104) TCGA-CM-6171-01 19 17441220 17441220 G - ANO8 Frame_Shift_Del p.L363Cfs*24 0.41 TCGA-CM-6171-01 19 18976564 18976564 C A UPF1 Missense_Mutation p.L1072I 0.33 deleterious(0.02) possibly_damaging(0.665) TCGA-CM-6171-01 19 19609415 19609416 - C GATAD2A Frame_Shift_Ins p.P366Tfs*74 0.50 TCGA-CM-6171-01 19 19746532 19746532 T C GMIP Splice_Site p.X443_splice 0.43 TCGA-CM-6171-01 19 21609420 21609420 T C ZNF493 3'UTR 0.37 TCGA-CM-6171-01 19 2289950 2289950 G A LINGO3 3'UTR 0.38 TCGA-CM-6171-01 19 2415703 2415703 C T TMPRSS9 Missense_Mutation p.R503W 0.48 deleterious(0) probably_damaging(0.991) TCGA-CM-6171-01 19 30018189 30018189 C T VSTM2B Missense_Mutation p.R52W 0.40 deleterious(0) probably_damaging(0.987) TCGA-CM-6171-01 19 3179677 3179677 C T S1PR4 Missense_Mutation p.A296V 0.43 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 19 3204748 3204748 C T NCLN Missense_Mutation p.R403W 0.41 deleterious(0.02) probably_damaging(0.919) TCGA-CM-6171-01 19 33617638 33617638 C T GPATCH1 Missense_Mutation p.R922W 0.36 deleterious_low_confidence(0) unknown(0) TCGA-CM-6171-01 19 3433520 3433520 G A NFIC Silent p.T213T 0.42 TCGA-CM-6171-01 19 3530853 3530853 C T FZR1 Missense_Mutation p.R240W 0.46 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 19 3542949 3542949 C A MFSD12 Nonsense_Mutation p.G483* 0.20 TCGA-CM-6171-01 19 35435595 35435595 G T ZNF30 Missense_Mutation p.K576N 0.44 deleterious(0.02) probably_damaging(0.993) TCGA-CM-6171-01 19 35540289 35540289 G C HPN Missense_Mutation p.A38P 0.48 deleterious(0.01) possibly_damaging(0.809) TCGA-CM-6171-01 19 35616054 35616054 C T LGI4 3'UTR 0.37 TCGA-CM-6171-01 19 35837632 35837632 G A CD22 3'UTR 0.37 TCGA-CM-6171-01 19 35990908 35990908 C T DMKN Silent p.A437A 0.41 TCGA-CM-6171-01 19 36019072 36019072 G A SBSN Nonsense_Mutation p.R38* 0.43 TCGA-CM-6171-01 19 36211898 36211899 - C KMT2B Frame_Shift_Ins p.K553Qfs*46 0.40 TCGA-CM-6171-01 19 36219050 36219050 C T KMT2B Nonsense_Mutation p.R1517* 0.46 TCGA-CM-6171-01 19 36220070 36220070 G A KMT2B Missense_Mutation p.R1597Q 0.31 possibly_damaging(0.885) TCGA-CM-6171-01 19 36223002 36223002 G - KMT2B Frame_Shift_Del p.G1879Vfs*16 0.47 TCGA-CM-6171-01 19 37369844 37369845 - T ZNF345 3'UTR 0.38 TCGA-CM-6171-01 19 37904156 37904156 A G ZNF569 Silent p.C468C 0.42 TCGA-CM-6171-01 19 38943580 38943580 G A RYR1 Missense_Mutation p.E456K 0.45 possibly_damaging(0.59) TCGA-CM-6171-01 19 38991567 38991567 C A RYR1 Missense_Mutation p.F2517L 0.37 benign(0.008) TCGA-CM-6171-01 19 39063826 39063826 G A RYR1 Missense_Mutation p.V4670I 0.30 possibly_damaging(0.472) TCGA-CM-6171-01 19 39663913 39663913 C - PAK4 Frame_Shift_Del p.Q189Sfs*180 0.40 TCGA-CM-6171-01 19 40329779 40329779 G T FBL Missense_Mutation p.L149M 0.12 tolerated(0.11) benign(0.255) TCGA-CM-6171-01 19 40408701 40408701 C T FCGBP Missense_Mutation p.G1380R 0.39 probably_damaging(0.999) TCGA-CM-6171-01 19 40538642 40538642 A G ZNF780B 3'UTR 0.44 TCGA-CM-6171-01 19 41019371 41019371 C T SPTBN4 Missense_Mutation p.A892V 0.30 deleterious(0) probably_damaging(0.926) TCGA-CM-6171-01 19 41096635 41096635 G C SHKBP1 Splice_Site p.X590_splice 0.32 TCGA-CM-6171-01 19 41916759 41916759 G A BCKDHA Intron 0.36 TCGA-CM-6171-01 19 41929067 41929067 G A BCKDHA Missense_Mutation p.R387H 0.39 deleterious(0) probably_damaging(0.931) TCGA-CM-6171-01 19 41930427 41930427 G A BCKDHA Missense_Mutation p.A418T 0.36 tolerated(0.15) benign(0) TCGA-CM-6171-01 19 42584550 42584550 C T ZNF574 Missense_Mutation p.R598C 0.45 deleterious(0) probably_damaging(0.965) TCGA-CM-6171-01 19 42796600 42796600 G A CIC Missense_Mutation p.V1053M 0.30 probably_damaging(0.971) TCGA-CM-6171-01 19 42861727 42861727 C - MEGF8 Frame_Shift_Del p.T1603Qfs*60 0.41 TCGA-CM-6171-01 19 43358318 43358318 T C PSG10P RNA 0.39 TCGA-CM-6171-01 19 43579771 43579772 - T PSG2 Frame_Shift_Ins p.P149Afs*22 0.30 TCGA-CM-6171-01 19 44832974 44832974 A T ZNF112 Missense_Mutation p.F452I 0.43 deleterious(0) benign(0.139) TCGA-CM-6171-01 19 4538288 4538288 C T LRG1 Silent p.P236P 0.43 TCGA-CM-6171-01 19 45801031 45801031 C T MARK4 Missense_Mutation p.R566C 0.57 deleterious(0) possibly_damaging(0.876) TCGA-CM-6171-01 19 45867747 45867747 G A ERCC2 Missense_Mutation p.A218V 0.30 deleterious(0) probably_damaging(0.96) TCGA-CM-6171-01 19 46329621 46329621 T C SYMPK Missense_Mutation p.Q731R 0.51 tolerated(0.25) benign(0.096) TCGA-CM-6171-01 19 46417943 46417943 C T NANOS2 Silent p.L3L 0.39 TCGA-CM-6171-01 19 46444177 46444177 C T NOVA2 Silent p.T141T 0.43 TCGA-CM-6171-01 19 46973323 46973323 C T PNMAL1 Missense_Mutation p.A324T 0.40 deleterious(0.02) possibly_damaging(0.682) TCGA-CM-6171-01 19 47424741 47424741 T - ARHGAP35 Frame_Shift_Del p.F938Lfs*10 0.14 TCGA-CM-6171-01 19 47861245 47861247 CCT - DHX34 In_Frame_Del p.L382del 0.42 TCGA-CM-6171-01 19 47979949 47979949 C T KPTN Missense_Mutation p.R341Q 0.11 tolerated(0.64) benign(0.001) TCGA-CM-6171-01 19 48182985 48182985 C T GLTSCR1 Silent p.D186D 0.22 TCGA-CM-6171-01 19 48250228 48250230 TTG - GLTSCR2 In_Frame_Del p.L78del 0.36 TCGA-CM-6171-01 19 48305879 48305879 G A TPRX1 Missense_Mutation p.P130L 0.52 deleterious(0.02) unknown(0) TCGA-CM-6171-01 19 48653378 48653378 G A LIG1 Missense_Mutation p.R222C 0.35 deleterious(0.02) benign(0.092) TCGA-CM-6171-01 19 48925132 48925132 G A GRIN2D Missense_Mutation p.D728N 0.41 tolerated(0.07) benign(0.059) TCGA-CM-6171-01 19 49001241 49001241 G A LMTK3 Missense_Mutation p.P1058S 0.36 unknown(0) TCGA-CM-6171-01 19 49113206 49113206 G A FAM83E Missense_Mutation p.R229W 0.60 deleterious(0) probably_damaging(0.956) TCGA-CM-6171-01 19 4932803 4932803 G C MIR4747 3'Flank 0.37 TCGA-CM-6171-01 19 49335968 49335968 G A HSD17B14 Missense_Mutation p.R78C 0.31 tolerated(0.06) benign(0.016) TCGA-CM-6171-01 19 49539031 49539031 C T CGB1 Missense_Mutation p.V102M 0.35 deleterious(0.04) probably_damaging(0.946) TCGA-CM-6171-01 19 49812565 49812565 A G SLC6A16 Missense_Mutation p.V327A 0.32 tolerated(0.58) benign(0.03) TCGA-CM-6171-01 19 49940045 49940045 G A SLC17A7 Missense_Mutation p.R26W 0.38 deleterious(0.02) possibly_damaging(0.586) TCGA-CM-6171-01 19 49965948 49965948 G - ALDH16A1 Frame_Shift_Del p.A347Lfs*155 0.40 TCGA-CM-6171-01 19 50357912 50357912 C T PTOV1 Missense_Mutation p.R105C 0.26 tolerated(0.06) probably_damaging(0.935) TCGA-CM-6171-01 19 50399312 50399312 T C IL4I1 Splice_Site p.X27_splice 0.42 TCGA-CM-6171-01 19 50412630 50412630 G A NUP62 Silent p.S145S 0.09 TCGA-CM-6171-01 19 50549737 50549737 T C ZNF473 Silent p.C679C 0.37 TCGA-CM-6171-01 19 50831809 50831809 G A KCNC3 Silent p.D177D 0.43 TCGA-CM-6171-01 19 51200878 51200878 G A SHANK1 Silent p.T635T 0.40 TCGA-CM-6171-01 19 51530777 51530777 C T KLK11 5'UTR 0.47 TCGA-CM-6171-01 19 51831024 51831024 C T IGLON5 Missense_Mutation p.T269M 0.46 deleterious(0) probably_damaging(0.959) TCGA-CM-6171-01 19 5244197 5244197 C T PTPRS Missense_Mutation p.A429T 0.32 deleterious(0.01) possibly_damaging(0.662) TCGA-CM-6171-01 19 52538141 52538141 C G ZNF432 Missense_Mutation p.S264T 0.39 tolerated(0.65) benign(0.197) TCGA-CM-6171-01 19 52870000 52870000 C T ZNF610 Missense_Mutation p.R457C 0.43 deleterious(0) possibly_damaging(0.462) TCGA-CM-6171-01 19 52909856 52909856 C T ZNF528 Silent p.N77N 0.34 TCGA-CM-6171-01 19 54290949 54290949 G A MIR371A RNA 0.60 TCGA-CM-6171-01 19 54327394 54327394 C T NLRP12 Missense_Mutation p.R12H 0.51 deleterious(0.03) probably_damaging(0.97) TCGA-CM-6171-01 19 54401249 54401249 T C PRKCG Missense_Mutation p.S326P 0.30 tolerated(0.18) benign(0.001) TCGA-CM-6171-01 19 54631736 54631736 G A PRPF31 Missense_Mutation p.R377H 0.50 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 19 54672348 54672350 AAG - TMC4 In_Frame_Del p.L173del 0.31 TCGA-CM-6171-01 19 54972708 54972708 G A LENG8 3'UTR 0.41 TCGA-CM-6171-01 19 55672708 55672708 A G DNAAF3 Missense_Mutation p.Y316H 0.32 deleterious(0) possibly_damaging(0.519) TCGA-CM-6171-01 19 55824255 55824255 G A TMEM150B Missense_Mutation p.S225F 0.42 deleterious(0.01) unknown(0) TCGA-CM-6171-01 19 56465970 56465970 A G NLRP8 Silent p.V182V 0.39 TCGA-CM-6171-01 19 57839099 57839099 A C ZNF543 Missense_Mutation p.E90A 0.44 deleterious(0.04) benign(0.071) TCGA-CM-6171-01 19 6374281 6374281 G A ALKBH7 Missense_Mutation p.R91H 0.54 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 19 6454692 6454692 C T SLC25A23 Missense_Mutation p.E174K 0.31 deleterious(0) probably_damaging(0.97) TCGA-CM-6171-01 19 7754257 7754257 C T FCER2 Missense_Mutation p.R263Q 0.59 tolerated(0.54) benign(0.04) TCGA-CM-6171-01 19 804930 804930 C T PTBP1 Silent p.H236H 0.50 TCGA-CM-6171-01 19 8398910 8398910 G A KANK3 Silent p.S506S 0.47 TCGA-CM-6171-01 19 8615468 8615468 G A MYO1F Silent p.Y294Y 0.39 TCGA-CM-6171-01 19 8619436 8619436 G - MYO1F Frame_Shift_Del p.P84Rfs*145 0.26 TCGA-CM-6171-01 19 9868369 9868369 A - ZNF846 Frame_Shift_Del p.S462Pfs*64 0.28 TCGA-CM-6171-01 1 100329990 100329990 G A AGL Missense_Mutation p.R170K 0.37 tolerated(0.41) benign(0.074) TCGA-CM-6171-01 1 100964937 100964937 C T CDC14A 3'UTR 0.36 TCGA-CM-6171-01 1 101479363 101479363 T C DPH5 Missense_Mutation p.H91R 0.40 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 1 103488501 103488501 A C COL11A1 Missense_Mutation p.Y348D 0.38 probably_damaging(0.98) TCGA-CM-6171-01 1 103573727 103573727 G A COL11A1 Missense_Mutation p.P3L 0.39 possibly_damaging(0.842) TCGA-CM-6171-01 1 104203007 104203007 A G AMY1A Missense_Mutation p.M302V 0.39 tolerated(0.37) benign(0.005) TCGA-CM-6171-01 1 10699106 10699106 C T CASZ1 Missense_Mutation p.E1725K 0.33 tolerated_low_confidence(0.05) unknown(0) TCGA-CM-6171-01 1 10714034 10714034 G A CASZ1 Missense_Mutation p.R694C 0.32 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 1 108507484 108507484 G A VAV3 Missense_Mutation p.P3L 0.34 tolerated(0.86) benign(0.001) TCGA-CM-6171-01 1 109731687 109731687 G T KIAA1324 Splice_Site p.X407_splice 0.38 TCGA-CM-6171-01 1 110029640 110029640 G - ATXN7L2 Frame_Shift_Del p.L106Sfs*23 0.36 TCGA-CM-6171-01 1 110038646 110038646 G A CYB561D1 Missense_Mutation p.R174Q 0.31 tolerated(0.38) benign(0.022) TCGA-CM-6171-01 1 110293412 110293412 G A EPS8L3 Missense_Mutation p.T548M 0.33 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 1 110754612 110754612 C T KCNC4 Missense_Mutation p.P164L 0.31 tolerated(0.84) benign(0.007) TCGA-CM-6171-01 1 110884269 110884269 C T RBM15 Missense_Mutation p.R748C 0.33 deleterious(0) possibly_damaging(0.735) TCGA-CM-6171-01 1 111216383 111216383 C T KCNA3 Missense_Mutation p.R350Q 0.42 tolerated(1) benign(0.019) TCGA-CM-6171-01 1 113239122 113239122 C T MOV10 Silent p.H649H 0.42 TCGA-CM-6171-01 1 114940224 114940231 TTTTCGTT CG TRIM33 3'UTR 0.10 TCGA-CM-6171-01 1 114942218 114942218 T C TRIM33 Missense_Mutation p.Y994C 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-CM-6171-01 1 11594510 11594510 C T PTCHD2 Nonsense_Mutation p.Q1150* 0.35 TCGA-CM-6171-01 1 11850686 11850686 G T MTHFR 3'UTR 0.18 TCGA-CM-6171-01 1 120056826 120056826 G A HSD3B1 Missense_Mutation p.G227D 0.40 tolerated(0.06) possibly_damaging(0.739) TCGA-CM-6171-01 1 12253151 12253151 A C TNFRSF1B Silent p.P261P 0.32 TCGA-CM-6171-01 1 1262302 1262302 G A GLTPD1 Silent p.S4S 0.41 TCGA-CM-6171-01 1 12837645 12837645 G A PRAMEF12 Missense_Mutation p.S452N 0.39 tolerated(0.13) benign(0.278) TCGA-CM-6171-01 1 12884790 12884790 A C PRAMEF11 3'UTR 0.36 TCGA-CM-6171-01 1 145595208 145595208 T - POLR3C Frame_Shift_Del p.T412Hfs*15 0.27 TCGA-CM-6171-01 1 149899706 149899706 C T SF3B4 5'UTR 0.33 TCGA-CM-6171-01 1 150445767 150445767 C T RPRD2 Missense_Mutation p.P1448L 0.36 deleterious_low_confidence(0) unknown(0) TCGA-CM-6171-01 1 150670992 150670992 G A HORMAD1 3'UTR 0.45 TCGA-CM-6171-01 1 151006728 151006728 G T PRUNE 3'UTR 0.41 TCGA-CM-6171-01 1 151156882 151156882 C T VPS72 Missense_Mutation p.R158Q 0.41 tolerated(0.13) benign(0.354) TCGA-CM-6171-01 1 151378465 151378465 C - POGZ Frame_Shift_Del p.E1016Rfs*3 0.32 TCGA-CM-6171-01 1 151547394 151547394 A G TUFT1 Missense_Mutation p.Q244R 0.43 tolerated(0.3) benign(0.287) TCGA-CM-6171-01 1 151773766 151773766 C T LINGO4 Missense_Mutation p.R472H 0.44 deleterious(0) benign(0.001) TCGA-CM-6171-01 1 152080153 152080153 G A TCHH Missense_Mutation p.A1847V 0.33 possibly_damaging(0.499) TCGA-CM-6171-01 1 152084148 152084148 G A TCHH Silent p.R515R 0.44 TCGA-CM-6171-01 1 152085486 152085486 G A TCHH Silent p.V69V 0.47 TCGA-CM-6171-01 1 152816180 152816180 C T LCE6A Missense_Mutation p.R62C 0.38 tolerated(0.05) benign(0.001) TCGA-CM-6171-01 1 152976056 152976056 C T SPRR3 3'UTR 0.45 TCGA-CM-6171-01 1 153270504 153270504 G A PGLYRP3 Silent p.D318D 0.44 TCGA-CM-6171-01 1 15392284 15392284 G A KAZN Intron 0.42 TCGA-CM-6171-01 1 154305131 154305131 A G ATP8B2 Missense_Mutation p.T216A 0.35 deleterious(0) probably_damaging(0.99) TCGA-CM-6171-01 1 155006058 155006058 G A DCST2 Silent p.Y40Y 0.38 TCGA-CM-6171-01 1 155014199 155014199 A G DCST1 Missense_Mutation p.N253S 0.38 tolerated(0.29) benign(0.001) TCGA-CM-6171-01 1 155294982 155294982 G - RUSC1 Intron 0.30 TCGA-CM-6171-01 1 156106170 156106170 C T LMNA Silent p.A441A 0.48 TCGA-CM-6171-01 1 156228859 156228859 G A SMG5 Silent p.F793F 0.42 TCGA-CM-6171-01 1 156563835 156563835 C T APOA1BP Missense_Mutation p.P276S 0.48 deleterious(0.01) probably_damaging(0.911) TCGA-CM-6171-01 1 158549568 158549568 G A OR10X1 Missense_Mutation p.T41I 0.50 tolerated(0.49) benign(0.004) TCGA-CM-6171-01 1 158596706 158596706 G T SPTA1 Missense_Mutation p.A1919D 0.37 tolerated(0.64) benign(0.023) TCGA-CM-6171-01 1 160313199 160313199 G - NCSTN Frame_Shift_Del p.G6Vfs*22 0.15 TCGA-CM-6171-01 1 16094041 16094041 C - FBLIM1 Frame_Shift_Del p.P142Rfs*59 0.33 TCGA-CM-6171-01 1 161183786 161183786 C T NDUFS2 Intron 0.40 TCGA-CM-6171-01 1 162345135 162345135 G T C1orf111 Silent p.P54P 0.46 TCGA-CM-6171-01 1 166135296 166135296 C T FAM78B Missense_Mutation p.E64K 0.38 tolerated(0.09) benign(0.116) TCGA-CM-6171-01 1 167839593 167839593 A G ADCY10 Silent p.S506S 0.42 TCGA-CM-6171-01 1 171707556 171707556 T - VAMP4 5'UTR 0.33 TCGA-CM-6171-01 1 171755204 171755204 C A METTL13 Missense_Mutation p.P367T 0.42 tolerated(0.11) benign(0.012) TCGA-CM-6171-01 1 17292984 17292984 G A CROCC Missense_Mutation p.R1593Q 0.41 benign(0.417) TCGA-CM-6171-01 1 173915731 173915731 C T RC3H1 Missense_Mutation p.M948I 0.41 tolerated(0.21) benign(0.002) TCGA-CM-6171-01 1 178834761 178834761 A G ANGPTL1 Missense_Mutation p.Y51H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 1 182835628 182835630 GAG - DHX9 In_Frame_Del p.G462del 0.44 TCGA-CM-6171-01 1 183196722 183196722 C T LAMC2 Missense_Mutation p.P453L 0.34 deleterious(0.01) probably_damaging(1) TCGA-CM-6171-01 1 184686069 184686069 G A EDEM3 Silent p.C441C 0.23 TCGA-CM-6171-01 1 190067325 190067325 G A BRINP3 Silent p.D708D 0.40 TCGA-CM-6171-01 1 190068235 190068235 T G BRINP3 Missense_Mutation p.Q405P 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-CM-6171-01 1 19411106 19411106 C T UBR4 Missense_Mutation p.R4967H 0.16 probably_damaging(0.991) TCGA-CM-6171-01 1 19481550 19481550 G A UBR4 Missense_Mutation p.A2107V 0.42 possibly_damaging(0.889) TCGA-CM-6171-01 1 19488946 19488946 C T UBR4 Missense_Mutation p.V1642M 0.17 benign(0.22) TCGA-CM-6171-01 1 19511610 19511610 G A UBR4 Missense_Mutation p.R641C 0.41 possibly_damaging(0.743) TCGA-CM-6171-01 1 19653802 19653802 G A PQLC2 Missense_Mutation p.V234M 0.46 deleterious(0) probably_damaging(0.989) TCGA-CM-6171-01 1 196682939 196682939 G T CFH Nonsense_Mutation p.E471* 0.37 TCGA-CM-6171-01 1 196920058 196920058 A G CFHR2 Silent p.V110V 0.35 TCGA-CM-6171-01 1 197111809 197111809 C A ASPM Missense_Mutation p.V525L 0.42 deleterious(0.02) benign(0.073) TCGA-CM-6171-01 1 200376136 200376136 T - ZNF281 3'UTR 0.32 TCGA-CM-6171-01 1 200376332 200376332 C T ZNF281 Silent p.A834A 0.38 TCGA-CM-6171-01 1 201195238 201195238 C - IGFN1 Frame_Shift_Del p.R3593Gfs*8 0.39 TCGA-CM-6171-01 1 201286876 201286876 C T PKP1 Silent p.T341T 0.25 TCGA-CM-6171-01 1 201292181 201292181 A C PKP1 Missense_Mutation p.N536T 0.42 tolerated(0.24) benign(0.05) TCGA-CM-6171-01 1 203194227 203194227 G T CHIT1 Missense_Mutation p.P88H 0.50 deleterious(0) probably_damaging(0.98) TCGA-CM-6171-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.36 TCGA-CM-6171-01 1 204402520 204402520 G T PIK3C2B Missense_Mutation p.L1293M 0.42 tolerated(0.13) possibly_damaging(0.83) TCGA-CM-6171-01 1 205042816 205042816 C T CNTN2 Missense_Mutation p.R1016C 0.37 tolerated(0.13) benign(0) TCGA-CM-6171-01 1 206760312 206760312 C T RASSF5 3'UTR 0.39 TCGA-CM-6171-01 1 207086311 207086311 C T FAIM3 Missense_Mutation p.M150I 0.13 tolerated(0.15) benign(0.035) TCGA-CM-6171-01 1 207139176 207139177 - T FCAMR Frame_Shift_Ins p.R66Kfs*103 0.29 TCGA-CM-6171-01 1 207222173 207222173 T C YOD1 3'UTR 0.36 TCGA-CM-6171-01 1 207245631 207245631 G A PFKFB2 Missense_Mutation p.R478H 0.30 probably_damaging(0.998) TCGA-CM-6171-01 1 207640176 207640176 T C CR2 Missense_Mutation p.F122L 0.36 deleterious(0.02) benign(0.149) TCGA-CM-6171-01 1 208213107 208213107 G A PLXNA2 Silent p.C1453C 0.41 TCGA-CM-6171-01 1 212534133 212534133 G A PPP2R5A 3'UTR 0.41 TCGA-CM-6171-01 1 212792438 212792438 A G ATF3 Intron 0.45 TCGA-CM-6171-01 1 215775439 215775440 - C KCTD3 Frame_Shift_Ins p.R348Afs*5 0.31 TCGA-CM-6171-01 1 215793922 215793922 A - KCTD3 Frame_Shift_Del p.S806Vfs*16 0.30 TCGA-CM-6171-01 1 216373046 216373046 C G USH2A Missense_Mutation p.R1245T 0.38 benign(0.014) TCGA-CM-6171-01 1 220311371 220311373 GAT - IARS2 In_Frame_Del p.D722del 0.40 TCGA-CM-6171-01 1 22156635 22156635 G - HSPG2 Intron 0.45 TCGA-CM-6171-01 1 22213820 22213820 C T HSPG2 Silent p.P322P 0.36 TCGA-CM-6171-01 1 223179175 223179177 ATT - DISP1 In_Frame_Del p.N1479_S1480delinsT 0.38 TCGA-CM-6171-01 1 2237599 2237599 C T SKI Silent p.R636R 0.24 TCGA-CM-6171-01 1 226027612 226027612 G A EPHX1 Missense_Mutation p.G269R 0.40 deleterious(0.04) benign(0.015) TCGA-CM-6171-01 1 227069688 227069688 C T PSEN2 Missense_Mutation p.T27M 0.43 tolerated(0.07) benign(0.06) TCGA-CM-6171-01 1 227096225 227096225 T C ADCK3 Intron 0.59 TCGA-CM-6171-01 1 22839587 22839587 G A ZBTB40 Missense_Mutation p.A878T 0.35 deleterious(0) possibly_damaging(0.798) TCGA-CM-6171-01 1 228491533 228491533 C T OBSCN Silent p.D4632D 0.42 TCGA-CM-6171-01 1 228506601 228506601 C T OBSCN Silent p.A5673A 0.33 TCGA-CM-6171-01 1 228522954 228522954 G A OBSCN Missense_Mutation p.A6411T 0.54 benign(0.102) TCGA-CM-6171-01 1 232626702 232626702 G A SIPA1L2 Missense_Mutation p.P575L 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-CM-6171-01 1 233353809 233353809 C T PCNXL2 Missense_Mutation p.V876I 0.44 tolerated(0.09) benign(0.052) TCGA-CM-6171-01 1 233394022 233394022 C T PCNXL2 Missense_Mutation p.R529Q 0.43 deleterious(0.01) benign(0.06) TCGA-CM-6171-01 1 23346340 23346340 A G KDM1A Missense_Mutation p.Q84R 0.34 tolerated_low_confidence(0.1) benign(0.036) TCGA-CM-6171-01 1 235331797 235331797 C A ARID4B 3'UTR 0.35 TCGA-CM-6171-01 1 236750758 236750758 C A HEATR1 Silent p.T553T 0.42 TCGA-CM-6171-01 1 237617851 237617851 C T RYR2 Missense_Mutation p.R485W 0.10 possibly_damaging(0.905) TCGA-CM-6171-01 1 237655201 237655201 G T RYR2 Missense_Mutation p.D602Y 0.37 possibly_damaging(0.713) TCGA-CM-6171-01 1 240256588 240256588 G T FMN2 Silent p.A393A 0.32 TCGA-CM-6171-01 1 240256760 240256760 C A FMN2 Missense_Mutation p.L451M 0.32 unknown(0) TCGA-CM-6171-01 1 24120833 24120833 C - LYPLA2 Intron 0.44 TCGA-CM-6171-01 1 24171998 24171998 T C FUCA1 3'UTR 0.46 TCGA-CM-6171-01 1 24180956 24180956 A C FUCA1 Missense_Mutation p.L288W 0.45 deleterious(0) probably_damaging(0.992) TCGA-CM-6171-01 1 242253062 242253062 A - PLD5 3'UTR 0.31 TCGA-CM-6171-01 1 2453179 2453179 C T PANK4 Missense_Mutation p.R62Q 0.56 tolerated(0.16) benign(0.015) TCGA-CM-6171-01 1 245847579 245847579 T C KIF26B Missense_Mutation p.M768T 0.33 tolerated(0.37) unknown(0) TCGA-CM-6171-01 1 2461352 2461352 C T HES5 Silent p.Q51Q 0.45 TCGA-CM-6171-01 1 247588624 247588624 C A NLRP3 Missense_Mutation p.Q627K 0.43 tolerated(0.11) possibly_damaging(0.9) TCGA-CM-6171-01 1 247978287 247978287 G A OR14A16 Missense_Mutation p.L249F 0.38 tolerated(0.11) possibly_damaging(0.656) TCGA-CM-6171-01 1 249142869 249142869 T C ZNF672 3'UTR 0.10 TCGA-CM-6171-01 1 24998908 24998908 A - SRRM1 3'UTR 0.25 TCGA-CM-6171-01 1 2541186 2541186 C T MMEL1 Missense_Mutation p.R126H 0.46 tolerated(0.15) benign(0.022) TCGA-CM-6171-01 1 26156267 26156267 C T MTFR1L Missense_Mutation p.A240V 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-CM-6171-01 1 26694241 26694241 G A ZNF683 Silent p.G54G 0.35 TCGA-CM-6171-01 1 26888093 26888093 G A RPS6KA1 Missense_Mutation p.R519Q 0.35 tolerated(0.15) benign(0.036) TCGA-CM-6171-01 1 27100350 27100350 C - ARID1A Frame_Shift_Del p.S1356Afs*125 0.46 TCGA-CM-6171-01 1 27876869 27876869 T - AHDC1 Frame_Shift_Del p.K586Nfs*37 0.37 TCGA-CM-6171-01 1 27939528 27939528 C T FGR Missense_Mutation p.R496H 0.43 tolerated(0.13) probably_damaging(0.912) TCGA-CM-6171-01 1 29641897 29641897 C T PTPRU Missense_Mutation p.R1091C 0.38 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 1 32200815 32200815 G - BAI2 Frame_Shift_Del p.L1141Cfs*35 0.27 TCGA-CM-6171-01 1 32221830 32221830 C T BAI2 Missense_Mutation p.R203H 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6171-01 1 32670930 32670930 C - CCDC28B 3'UTR 0.32 TCGA-CM-6171-01 1 32674836 32674836 C T DCDC2B Nonsense_Mutation p.Q48* 0.38 TCGA-CM-6171-01 1 3547435 3547435 T C WRAP73 3'UTR 0.48 TCGA-CM-6171-01 1 36039302 36039302 G A TFAP2E Intron 0.43 TCGA-CM-6171-01 1 36282489 36282489 C T AGO4 Missense_Mutation p.P9L 0.35 tolerated(0.15) benign(0.001) TCGA-CM-6171-01 1 39924064 39924064 G A MACF1 Missense_Mutation p.R4974H 0.42 benign(0.33) TCGA-CM-6171-01 1 39991436 39991436 G A BMP8A Missense_Mutation p.R392H 0.40 deleterious(0.01) benign(0.378) TCGA-CM-6171-01 1 40627142 40627142 C T RLF Missense_Mutation p.A24V 0.38 tolerated_low_confidence(0.9) unknown(0) TCGA-CM-6171-01 1 43787075 43787075 C T TIE1 Missense_Mutation p.P1053S 0.32 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 1 44456091 44456091 C T B4GALT2 Missense_Mutation p.R393W 0.44 deleterious(0.01) possibly_damaging(0.549) TCGA-CM-6171-01 1 46499885 46499885 C - MAST2 Frame_Shift_Del p.R1274Dfs*9 0.38 TCGA-CM-6171-01 1 47024444 47024444 A G MKNK1 Missense_Mutation p.F401L 0.45 tolerated(0.06) possibly_damaging(0.844) TCGA-CM-6171-01 1 50666913 50666913 A G ELAVL4 3'UTR 0.37 TCGA-CM-6171-01 1 53546466 53546466 C A PODN Missense_Mutation p.L575M 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-CM-6171-01 1 57480714 57480714 C T DAB1 Missense_Mutation p.R429H 0.44 deleterious(0.01) possibly_damaging(0.852) TCGA-CM-6171-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.46 TCGA-CM-6171-01 1 62923235 62923235 C A DOCK7 Missense_Mutation p.K2087N 0.44 deleterious_low_confidence(0.04) benign(0.043) TCGA-CM-6171-01 1 65157116 65157117 - C CACHD1 Frame_Shift_Ins p.Q1185Sfs*23 0.28 TCGA-CM-6171-01 1 6520954 6520954 G A ESPN 3'UTR 0.33 TCGA-CM-6171-01 1 65325825 65325825 C T JAK1 Missense_Mutation p.V433I 0.44 deleterious(0.02) benign(0.135) TCGA-CM-6171-01 1 6533312 6533312 C T PLEKHG5 Missense_Mutation p.R344Q 0.33 tolerated(0.12) probably_damaging(0.964) TCGA-CM-6171-01 1 65858360 65858360 C T DNAJC6 Missense_Mutation p.A572V 0.40 tolerated(0.22) benign(0.002) TCGA-CM-6171-01 1 6694597 6694597 C A DNAJC11 3'UTR 0.46 TCGA-CM-6171-01 1 68948450 68948452 GAG - DEPDC1 In_Frame_Del p.L347del 0.44 TCGA-CM-6171-01 1 78383701 78383701 G T NEXN Missense_Mutation p.K92N 0.38 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 1 7902763 7902763 C T PER3 Missense_Mutation p.A1185V 0.40 tolerated(0.39) benign(0.132) TCGA-CM-6171-01 1 8418697 8418697 G A RERE Missense_Mutation p.R1300C 0.46 unknown(0) TCGA-CM-6171-01 1 86512510 86512510 G A COL24A1 Nonsense_Mutation p.Q650* 0.33 TCGA-CM-6171-01 1 86951243 86951243 C T CLCA1 Missense_Mutation p.A318V 0.45 deleterious(0.05) benign(0.01) TCGA-CM-6171-01 1 92546080 92546080 C T BTBD8 5'UTR 0.36 TCGA-CM-6171-01 1 92772747 92772747 T - RPAP2 Frame_Shift_Del p.C136Afs*35 0.28 TCGA-CM-6171-01 1 9673080 9673080 C T TMEM201 Missense_Mutation p.A647V 0.39 tolerated(0.06) benign(0.113) TCGA-CM-6171-01 20 1559114 1559114 C T RP4-576H24.4 Silent p.L100L 0.42 TCGA-CM-6171-01 20 16337014 16337014 G A KIF16B Silent p.C1194C 0.35 TCGA-CM-6171-01 20 18005327 18005327 C T OVOL2 Missense_Mutation p.A261T 0.43 tolerated(1) benign(0) TCGA-CM-6171-01 20 19955560 19955560 C T RIN2 Silent p.N346N 0.31 TCGA-CM-6171-01 20 19956393 19956394 - C RIN2 Frame_Shift_Ins p.I627Hfs*7 0.40 TCGA-CM-6171-01 20 20596728 20596728 A - RALGAPA2 Frame_Shift_Del p.F549Lfs*4 0.31 TCGA-CM-6171-01 20 2635576 2635576 C A NOP56 Silent p.T184T 0.48 TCGA-CM-6171-01 20 30232801 30232801 A - COX4I2 3'UTR 0.39 TCGA-CM-6171-01 20 3146871 3146871 C T LZTS3 Missense_Mutation p.G199R 0.35 tolerated(0.22) probably_damaging(0.996) TCGA-CM-6171-01 20 31481029 31481029 G A EFCAB8 Missense_Mutation p.V270I 0.41 TCGA-CM-6171-01 20 31625545 31625545 G A BPIFB6 Splice_Site p.X282_splice 0.48 TCGA-CM-6171-01 20 32873302 32873302 C T AHCY Missense_Mutation p.E371K 0.17 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-CM-6171-01 20 33969746 33969746 G A UQCC1 Missense_Mutation p.T103M 0.51 deleterious(0) probably_damaging(0.925) TCGA-CM-6171-01 20 3673518 3673518 G A SIGLEC1 Missense_Mutation p.R1257W 0.50 deleterious(0.04) benign(0.082) TCGA-CM-6171-01 20 368784 368784 C - TRIB3 Frame_Shift_Del p.C46Afs*5 0.40 TCGA-CM-6171-01 20 37203500 37203500 C T RALGAPB Missense_Mutation p.R1459W 0.34 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 20 37356135 37356135 G A SLC32A1 Missense_Mutation p.G144D 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6171-01 20 37652388 37652389 AT - DHX35 Frame_Shift_Del p.Y552* 0.34 TCGA-CM-6171-01 20 39795148 39795148 C T PLCG1 Missense_Mutation p.A678V 0.52 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 20 39832722 39832722 G A ZHX3 Missense_Mutation p.P279S 0.39 tolerated(0.26) benign(0.002) TCGA-CM-6171-01 20 422394 422394 C T TBC1D20 Intron 0.48 TCGA-CM-6171-01 20 42826211 42826211 C T OSER1 Silent p.G120G 0.40 TCGA-CM-6171-01 20 43264897 43264897 G C ADA Missense_Mutation p.I22M 0.32 deleterious(0.02) possibly_damaging(0.815) TCGA-CM-6171-01 20 43726587 43726587 C T KCNS1 Missense_Mutation p.E276K 0.40 deleterious(0) probably_damaging(0.979) TCGA-CM-6171-01 20 44003910 44003910 G A TP53TG5 Silent p.T179T 0.49 TCGA-CM-6171-01 20 44511966 44511966 G A ZSWIM1 Nonsense_Mutation p.W245* 0.36 TCGA-CM-6171-01 20 46262346 46262346 G A NCOA3 Silent p.G310G 0.45 TCGA-CM-6171-01 20 47246046 47246046 C T PREX1 Silent p.S1569S 0.44 TCGA-CM-6171-01 20 49571760 49571760 G A DPM1 Missense_Mutation p.A75V 0.38 tolerated(0.37) benign(0.047) TCGA-CM-6171-01 20 56087731 56087731 G A CTCFL Missense_Mutation p.R470C 0.42 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 20 56137167 56137167 G A PCK1 Missense_Mutation p.E89K 0.49 deleterious(0) probably_damaging(0.992) TCGA-CM-6171-01 20 60587937 60587937 C T TAF4 Silent p.K525K 0.49 TCGA-CM-6171-01 20 60903462 60903462 C T LAMA5 Missense_Mutation p.G1496D 0.40 benign(0.119) TCGA-CM-6171-01 20 60906108 60906108 G A LAMA5 Silent p.H1210H 0.39 TCGA-CM-6171-01 20 60937581 60937581 C T LAMA5 Missense_Mutation p.A109T 0.41 possibly_damaging(0.723) TCGA-CM-6171-01 20 61511496 61511496 G A DIDO1 Missense_Mutation p.R1938W 0.39 probably_damaging(0.998) TCGA-CM-6171-01 20 61542279 61542279 G A DIDO1 Missense_Mutation p.A229V 0.54 benign(0.01) TCGA-CM-6171-01 20 61881302 61881302 C T NKAIN4 Silent p.L59L 0.43 TCGA-CM-6171-01 20 61917379 61917379 T C ARFGAP1 Intron 0.08 TCGA-CM-6171-01 20 61982082 61982082 G A CHRNA4 Silent p.A227A 0.37 TCGA-CM-6171-01 20 62250759 62250759 G A GMEB2 5'UTR 0.46 TCGA-CM-6171-01 20 62332015 62332015 C T ARFRP1 Missense_Mutation p.D153N 0.40 tolerated(0.25) possibly_damaging(0.479) TCGA-CM-6171-01 20 62421233 62421233 C G ZBTB46 Missense_Mutation p.S293T 0.08 tolerated(0.42) benign(0.071) TCGA-CM-6171-01 20 62648190 62648190 G A PRPF6 Missense_Mutation p.A547T 0.35 deleterious(0) possibly_damaging(0.531) TCGA-CM-6171-01 20 62737876 62737876 C T NPBWR2 Silent p.A103A 0.29 TCGA-CM-6171-01 20 76978 76978 G A DEFB125 Missense_Mutation p.E131K 0.49 tolerated(1) benign(0) TCGA-CM-6171-01 21 15753637 15753637 C T HSPA13 Missense_Mutation p.V85I 0.41 tolerated(0.47) benign(0.02) TCGA-CM-6171-01 21 30248595 30248595 T - N6AMT1 3'UTR 0.20 TCGA-CM-6171-01 21 32201659 32201659 C T KRTAP7-1 RNA 0.46 TCGA-CM-6171-01 21 32253278 32253278 A G KRTAP11-1 3'UTR 0.09 TCGA-CM-6171-01 21 34399407 34399407 G A OLIG2 Silent p.S79S 0.41 TCGA-CM-6171-01 21 36081038 36081038 G A CLIC6 Missense_Mutation p.A551T 0.40 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 21 36171619 36171619 C T RUNX1 Missense_Mutation p.E316K 0.40 tolerated(0.27) benign(0.082) TCGA-CM-6171-01 21 40765122 40765124 TAT - WRB In_Frame_Del p.Y124del 0.42 TCGA-CM-6171-01 21 41384837 41384837 T C DSCAM 3'UTR 0.44 TCGA-CM-6171-01 21 41711237 41711237 G A DSCAM Missense_Mutation p.T439M 0.36 tolerated(0.08) probably_damaging(0.992) TCGA-CM-6171-01 21 42622809 42622809 G A BACE2 Missense_Mutation p.R372H 0.33 deleterious(0) probably_damaging(0.994) TCGA-CM-6171-01 21 45950953 45950953 G A TSPEAR Silent p.S202S 0.45 TCGA-CM-6171-01 21 46057597 46057597 C - KRTAP10-10 Frame_Shift_Del p.C90Afs*177 0.31 TCGA-CM-6171-01 21 46323314 46323314 C G ITGB2 Silent p.R155R 0.33 TCGA-CM-6171-01 22 17072273 17072273 G T CCT8L2 Missense_Mutation p.Q390K 0.11 deleterious(0.04) possibly_damaging(0.489) TCGA-CM-6171-01 22 17976568 17976568 C T CECR2 Nonsense_Mutation p.R78* 0.43 TCGA-CM-6171-01 22 18022674 18022674 G A CECR2 Missense_Mutation p.E927K 0.05 deleterious_low_confidence(0.03) benign(0.014) TCGA-CM-6171-01 22 18769683 18769683 G A GGT3P RNA 0.12 TCGA-CM-6171-01 22 19393347 19393347 T C HIRA Missense_Mutation p.Q120R 0.40 tolerated(0.19) benign(0.132) TCGA-CM-6171-01 22 19960285 19960285 C T ARVCF Silent p.T872T 0.37 TCGA-CM-6171-01 22 22712601 22712601 T C IGLV1-47 Missense_Mutation p.L115P 0.45 deleterious_low_confidence(0) benign(0.067) TCGA-CM-6171-01 22 23741994 23741994 C T ZDHHC8P1 RNA 0.43 TCGA-CM-6171-01 22 24086033 24086033 G A ZNF70 Missense_Mutation p.S432L 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-CM-6171-01 22 25331491 25331491 C T TMEM211 Missense_Mutation p.E67K 0.36 tolerated(1) benign(0.017) TCGA-CM-6171-01 22 25961002 25961002 G A ADRBK2 5'UTR 0.26 TCGA-CM-6171-01 22 26164325 26164325 G A MYO18B Missense_Mutation p.V148M 0.36 deleterious_low_confidence(0.04) benign(0.05) TCGA-CM-6171-01 22 26829896 26829896 C T ASPHD2 Silent p.Y105Y 0.31 TCGA-CM-6171-01 22 26888076 26888076 C T TFIP11 Missense_Mutation p.R806H 0.16 tolerated(0.13) benign(0.01) TCGA-CM-6171-01 22 29440867 29440867 C T ZNRF3 Nonsense_Mutation p.R245* 0.49 TCGA-CM-6171-01 22 29445643 29445643 C - ZNRF3 Frame_Shift_Del p.R493Gfs*77 0.44 TCGA-CM-6171-01 22 29695594 29695594 G A EWSR1 Missense_Mutation p.D567N 0.43 deleterious_low_confidence(0.02) unknown(0) TCGA-CM-6171-01 22 29907176 29907176 T C THOC5 Missense_Mutation p.Y636C 0.47 deleterious(0) possibly_damaging(0.759) TCGA-CM-6171-01 22 29935370 29935370 G T THOC5 Missense_Mutation p.P183H 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-CM-6171-01 22 30116451 30116451 G - CABP7 Frame_Shift_Del p.G14Afs*82 0.36 TCGA-CM-6171-01 22 31685340 31685340 G A PIK3IP1 Missense_Mutation p.A183V 0.52 tolerated(0.35) benign(0.023) TCGA-CM-6171-01 22 32021780 32021780 G A PISD Missense_Mutation p.R8W 0.52 deleterious_low_confidence(0.02) benign(0.157) TCGA-CM-6171-01 22 32113180 32113180 G A PRR14L Silent p.H215H 0.36 TCGA-CM-6171-01 22 32233039 32233039 C T DEPDC5 Missense_Mutation p.A742V 0.41 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 22 33255324 33255324 C - TIMP3 Frame_Shift_Del p.P201Rfs*26 0.34 TCGA-CM-6171-01 22 35815961 35815961 C T MCM5 Silent p.H596H 0.41 TCGA-CM-6171-01 22 36662064 36662064 G A APOL1 Silent p.A410A 0.33 TCGA-CM-6171-01 22 36680495 36680495 A G MYH9 Missense_Mutation p.L1849P 0.49 possibly_damaging(0.797) TCGA-CM-6171-01 22 36689833 36689833 G A MYH9 Missense_Mutation p.A1305V 0.25 benign(0.046) TCGA-CM-6171-01 22 37769104 37769104 G - ELFN2 3'UTR 0.27 TCGA-CM-6171-01 22 38062111 38062111 C T PDXP 3'UTR 0.49 TCGA-CM-6171-01 22 38155544 38155544 C T TRIOBP Intron 0.41 TCGA-CM-6171-01 22 38211729 38211729 T C GCAT Missense_Mutation p.Y318H 0.35 deleterious(0) probably_damaging(0.996) TCGA-CM-6171-01 22 39078403 39078403 G A TOMM22 Missense_Mutation p.A65T 0.49 tolerated(0.24) benign(0.018) TCGA-CM-6171-01 22 39479814 39479814 G A APOBEC3G Silent p.L220L 0.33 TCGA-CM-6171-01 22 39811644 39811644 C T TAB1 Missense_Mutation p.R104C 0.50 deleterious(0.01) possibly_damaging(0.898) TCGA-CM-6171-01 22 40807830 40807831 - G MKL1 Frame_Shift_Ins p.L787Pfs*10 0.48 TCGA-CM-6171-01 22 41664108 41664108 G T RANGAP1 Missense_Mutation p.P98Q 0.34 deleterious(0.04) possibly_damaging(0.541) TCGA-CM-6171-01 22 41742149 41742149 C T ZC3H7B Silent p.R534R 0.42 TCGA-CM-6171-01 22 41922430 41922430 C T ACO2 Silent p.P642P 0.52 TCGA-CM-6171-01 22 42042964 42042964 G T XRCC6 Missense_Mutation p.A280S 0.43 tolerated(0.08) possibly_damaging(0.761) TCGA-CM-6171-01 22 42092292 42092292 C - C22orf46 3'UTR 0.29 TCGA-CM-6171-01 22 42264705 42264705 G A SREBF2 Missense_Mutation p.R210Q 0.44 tolerated(0.9) probably_damaging(0.99) TCGA-CM-6171-01 22 44582501 44582501 T C PARVG Intron 0.44 TCGA-CM-6171-01 22 45075729 45075729 C T PRR5 Missense_Mutation p.P17L 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-CM-6171-01 22 50655195 50655195 C T SELO Silent p.I526I 0.42 TCGA-CM-6171-01 22 50659001 50659001 G A TUBGCP6 Missense_Mutation p.R1263W 0.29 deleterious(0) benign(0.133) TCGA-CM-6171-01 22 50664338 50664338 C T TUBGCP6 Missense_Mutation p.R623Q 0.38 tolerated(0.05) probably_damaging(0.968) TCGA-CM-6171-01 22 50879410 50879410 C - PPP6R2 Frame_Shift_Del p.P821Rfs*23 0.27 TCGA-CM-6171-01 22 51117214 51117214 G A SHANK3 Missense_Mutation p.A156T 0.38 probably_damaging(0.971) TCGA-CM-6171-01 2 105896839 105896839 T - TGFBRAP1 Frame_Shift_Del p.K488Sfs*23 0.24 TCGA-CM-6171-01 2 107073579 107073579 G A RGPD3 Missense_Mutation p.R85C 0.41 deleterious(0) probably_damaging(0.995) TCGA-CM-6171-01 2 10747355 10747355 T C NOL10 Missense_Mutation p.Y370C 0.34 deleterious(0) probably_damaging(0.995) TCGA-CM-6171-01 2 113994167 113994167 G A PAX8 Intron 0.46 TCGA-CM-6171-01 2 114257154 114257155 - C FOXD4L1 Frame_Shift_Ins p.Y110Lfs*29 0.36 TCGA-CM-6171-01 2 118579618 118579618 G A DDX18 Missense_Mutation p.R311H 0.44 deleterious(0) probably_damaging(0.993) TCGA-CM-6171-01 2 118677966 118677966 G A CCDC93 Missense_Mutation p.R617C 0.39 deleterious(0) possibly_damaging(0.816) TCGA-CM-6171-01 2 11911613 11911613 C T LPIN1 Missense_Mutation p.T184M 0.41 tolerated(0.1) benign(0.025) TCGA-CM-6171-01 2 121747471 121747471 C G GLI2 Missense_Mutation p.H1327Q 0.44 tolerated_low_confidence(0.11) possibly_damaging(0.462) TCGA-CM-6171-01 2 122209378 122209378 T C CLASP1 Missense_Mutation p.H478R 0.36 deleterious(0) benign(0.395) TCGA-CM-6171-01 2 128476975 128476975 C A WDR33 Missense_Mutation p.G875V 0.10 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CM-6171-01 2 128608242 128608242 T C POLR2D Missense_Mutation p.K91R 0.40 tolerated(0.16) benign(0.019) TCGA-CM-6171-01 2 130737758 130737758 G A RAB6C Missense_Mutation p.V24I 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.904) TCGA-CM-6171-01 2 130843928 130843928 A G POTEF Silent p.D528D 0.23 TCGA-CM-6171-01 2 130939437 130939437 C - SMPD4 5'UTR 0.45 TCGA-CM-6171-01 2 131522198 131522198 C A AMER3 Silent p.A851A 0.44 TCGA-CM-6171-01 2 131674222 131674222 G A ARHGEF4 5'Flank 0.30 TCGA-CM-6171-01 2 132010131 132010131 T C POTEE Silent p.D528D 0.22 TCGA-CM-6171-01 2 138738852 138738852 G A HNMT Intron 0.39 TCGA-CM-6171-01 2 141079633 141079633 G A LRP1B Missense_Mutation p.A4180V 0.38 benign(0) TCGA-CM-6171-01 2 141819647 141819648 - T LRP1B Frame_Shift_Ins p.N403Kfs*2 0.32 TCGA-CM-6171-01 2 15417144 15417144 G A NBAS Silent p.H1740H 0.36 TCGA-CM-6171-01 2 155102432 155102432 G A GALNT13 Missense_Mutation p.R265H 0.36 deleterious(0) possibly_damaging(0.457) TCGA-CM-6171-01 2 160035412 160035412 G A TANC1 Missense_Mutation p.A750T 0.42 deleterious(0.01) possibly_damaging(0.696) TCGA-CM-6171-01 2 166903294 166903294 G A SCN1A Nonsense_Mutation p.Q455* 0.32 TCGA-CM-6171-01 2 168106943 168106944 AT - XIRP2 Frame_Shift_Del p.I3015* 0.25 TCGA-CM-6171-01 2 170127594 170127594 A - LRP2 Frame_Shift_Del p.S714Hfs*51 0.25 TCGA-CM-6171-01 2 172935727 172935727 G A METAP1D Silent p.R211R 0.39 TCGA-CM-6171-01 2 177036449 177036449 A G HOXD3 Missense_Mutation p.Y249C 0.33 deleterious(0) benign(0.001) TCGA-CM-6171-01 2 178402942 178402942 A - AGPS 3'UTR 0.24 TCGA-CM-6171-01 2 179397806 179397806 C T TTN Silent p.P34512P 0.46 TCGA-CM-6171-01 2 179398606 179398606 G A TTN Missense_Mutation p.R34246C 0.30 TCGA-CM-6171-01 2 179500702 179500702 C T TTN Missense_Mutation p.V13866I 0.29 TCGA-CM-6171-01 2 179616644 179616644 T A TTN Intron 0.45 TCGA-CM-6171-01 2 185731125 185731125 A - ZNF804A Frame_Shift_Del p.A49Lfs*5 0.33 TCGA-CM-6171-01 2 189599261 189599261 A - DIRC1 3'UTR 0.35 TCGA-CM-6171-01 2 190560925 190560925 T - ANKAR Frame_Shift_Del p.F514Sfs*70 0.31 TCGA-CM-6171-01 2 196545108 196545108 T G SLC39A10 Missense_Mutation p.I114M 0.39 tolerated(0.12) benign(0.005) TCGA-CM-6171-01 2 197002299 197002299 T G STK17B Missense_Mutation p.N331H 0.36 tolerated(0.19) benign(0.371) TCGA-CM-6171-01 2 198353763 198353763 C T HSPD1 Missense_Mutation p.R393Q 0.38 deleterious(0.02) benign(0.072) TCGA-CM-6171-01 2 198948946 198948946 C G PLCL1 Missense_Mutation p.N235K 0.45 tolerated(0.4) benign(0.004) TCGA-CM-6171-01 2 202498106 202498106 A G TMEM237 Missense_Mutation p.L108S 0.45 deleterious(0.04) possibly_damaging(0.844) TCGA-CM-6171-01 2 202521034 202521034 T C MPP4 Missense_Mutation p.H396R 0.36 tolerated(0.74) benign(0.001) TCGA-CM-6171-01 2 202521071 202521071 G A MPP4 Missense_Mutation p.R384C 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-CM-6171-01 2 202899454 202899454 G A FZD7 Silent p.A28A 0.46 TCGA-CM-6171-01 2 203759314 203759314 G T WDR12 Silent p.I215I 0.39 TCGA-CM-6171-01 2 204074029 204074029 A - NBEAL1 Frame_Shift_Del p.K2562Rfs*15 0.29 TCGA-CM-6171-01 2 207620066 207620066 G A MDH1B Missense_Mutation p.R193C 0.45 deleterious(0.02) possibly_damaging(0.901) TCGA-CM-6171-01 2 209308146 209308146 T G PTH2R Missense_Mutation p.F195V 0.37 deleterious(0) possibly_damaging(0.724) TCGA-CM-6171-01 2 210787065 210787065 C T UNC80 Missense_Mutation p.R1808C 0.44 probably_damaging(0.996) TCGA-CM-6171-01 2 213403254 213403254 T - ERBB4 Frame_Shift_Del p.M1? 0.16 TCGA-CM-6171-01 2 216229621 216229621 G A FN1 Missense_Mutation p.T2411I 0.37 deleterious(0) possibly_damaging(0.837) TCGA-CM-6171-01 2 216877984 216877984 C T MREG Missense_Mutation p.A23T 0.39 tolerated_low_confidence(0.18) benign(0.003) TCGA-CM-6171-01 2 218682411 218682411 A G TNS1 Splice_Site p.X1444_splice 0.45 TCGA-CM-6171-01 2 218699818 218699818 A G TNS1 Silent p.S967S 0.34 TCGA-CM-6171-01 2 218750492 218750492 C T TNS1 Missense_Mutation p.G239E 0.46 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 2 219266399 219266399 G A CTDSP1 Silent p.A60A 0.38 TCGA-CM-6171-01 2 219297523 219297523 A C VIL1 Missense_Mutation p.Q450P 0.37 deleterious(0.02) benign(0.09) TCGA-CM-6171-01 2 220309456 220309456 C - SPEG Frame_Shift_Del p.T159Rfs*19 0.31 TCGA-CM-6171-01 2 231079699 231079699 G T SP110 Silent p.P94P 0.41 TCGA-CM-6171-01 2 233407646 233407646 C T CHRNG Missense_Mutation p.A220V 0.41 tolerated(0.3) benign(0.003) TCGA-CM-6171-01 2 233635736 233635738 AGA - KCNJ13 In_Frame_Del p.F112del 0.39 TCGA-CM-6171-01 2 233785159 233785159 C T NGEF Silent p.E221E 0.40 TCGA-CM-6171-01 2 234346999 234346999 C G DGKD Missense_Mutation p.D353E 0.32 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 2 237074712 237074712 G A GBX2 Nonsense_Mutation p.R298* 0.57 TCGA-CM-6171-01 2 238274556 238274556 C T COL6A3 Missense_Mutation p.V1875I 0.54 benign(0.003) TCGA-CM-6171-01 2 238486765 238486765 G A RAB17 Missense_Mutation p.A64V 0.39 tolerated(0.21) benign(0.004) TCGA-CM-6171-01 2 238688266 238688266 C A LRRFIP1 3'UTR 0.43 TCGA-CM-6171-01 2 24009018 24009018 C T ATAD2B Missense_Mutation p.R951Q 0.36 tolerated(0.31) possibly_damaging(0.899) TCGA-CM-6171-01 2 240923035 240923035 C T NDUFA10 Intron 0.41 TCGA-CM-6171-01 2 241513566 241513566 C T RNPEPL1 Silent p.I94I 0.33 TCGA-CM-6171-01 2 242152030 242152030 C T ANO7 Missense_Mutation p.R627C 0.38 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 2 25469073 25469073 G A DNMT3A Missense_Mutation p.A462V 0.35 tolerated(0.79) benign(0) TCGA-CM-6171-01 2 26204600 26204600 C T KIF3C Missense_Mutation p.V63M 0.45 probably_damaging(0.991) TCGA-CM-6171-01 2 26697485 26697485 C T OTOF Missense_Mutation p.E1062K 0.41 deleterious(0.01) probably_damaging(0.969) TCGA-CM-6171-01 2 27884191 27884191 G A SUPT7L Missense_Mutation p.R27W 0.39 deleterious(0) probably_damaging(0.965) TCGA-CM-6171-01 2 28050590 28050590 G A RBKS Silent p.S213S 0.41 TCGA-CM-6171-01 2 29473982 29473982 G A ALK Silent p.T731T 0.34 TCGA-CM-6171-01 2 31489497 31489497 T C EHD3 Missense_Mutation p.L512P 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-CM-6171-01 2 31605967 31605967 A G XDH Missense_Mutation p.V313A 0.27 tolerated(0.94) benign(0.001) TCGA-CM-6171-01 2 33952424 33952424 G A AC009499.1 Intron 0.32 TCGA-CM-6171-01 2 3502771 3502771 C T ADI1 Missense_Mutation p.R168H 0.42 deleterious(0) probably_damaging(0.989) TCGA-CM-6171-01 2 37334666 37334666 A - EIF2AK2 Frame_Shift_Del p.F495Sfs*39 0.36 TCGA-CM-6171-01 2 37571954 37571954 G - QPCT Frame_Shift_Del p.V29Sfs*20 0.28 TCGA-CM-6171-01 2 39996928 39996928 A G THUMPD2 Silent p.D198D 0.03 TCGA-CM-6171-01 2 42990264 42990264 G A OXER1 Silent p.P352P 0.35 TCGA-CM-6171-01 2 43452623 43452623 C - ZFP36L2 Frame_Shift_Del p.G107Afs*80 0.68 TCGA-CM-6171-01 2 44099257 44099257 C T ABCG8 Silent p.D369D 0.42 TCGA-CM-6171-01 2 47709947 47709947 G A MSH2 Silent p.L888L 0.39 TCGA-CM-6171-01 2 48822557 48822557 G A STON1 3'UTR 0.36 TCGA-CM-6171-01 2 5838668 5838668 C T SOX11 3'UTR 0.39 TCGA-CM-6171-01 2 60688056 60688056 G A BCL11A Missense_Mutation p.A664V 0.69 deleterious(0) possibly_damaging(0.499) TCGA-CM-6171-01 2 61331038 61331038 C T KIAA1841 Silent p.G472G 0.42 TCGA-CM-6171-01 2 61447487 61447487 C T USP34 Missense_Mutation p.E2669K 0.39 deleterious(0) probably_damaging(0.919) TCGA-CM-6171-01 2 68873257 68873257 G A PROKR1 Missense_Mutation p.A102T 0.38 deleterious(0.02) possibly_damaging(0.846) TCGA-CM-6171-01 2 73302665 73302665 G - RAB11FIP5 Frame_Shift_Del p.P649Rfs*111 0.40 TCGA-CM-6171-01 2 73455529 73455529 T - PRADC1 3'UTR 0.31 TCGA-CM-6171-01 2 74326436 74326436 G A TET3 Missense_Mutation p.V966M 0.43 deleterious(0) possibly_damaging(0.709) TCGA-CM-6171-01 2 74688678 74688678 A G MOGS Silent p.D746D 0.34 TCGA-CM-6171-01 2 80875051 80875051 T - CTNNA2 3'UTR 0.32 TCGA-CM-6171-01 2 84932646 84932647 CT - DNAH6 Frame_Shift_Del p.S2835* 0.26 TCGA-CM-6171-01 2 88410107 88410107 G C SMYD1 3'UTR 0.27 TCGA-CM-6171-01 2 88410108 88410108 A T SMYD1 3'UTR 0.27 TCGA-CM-6171-01 2 96781309 96781309 G A ADRA2B Missense_Mutation p.R194C 0.31 deleterious(0) probably_damaging(0.919) TCGA-CM-6171-01 2 97364482 97364483 AG - FER1L5 RNA 0.32 TCGA-CM-6171-01 2 97505817 97505817 G - ANKRD23 Frame_Shift_Del p.L214Cfs*23 0.36 TCGA-CM-6171-01 2 98996737 98996737 C T CNGA3 Silent p.A105A 0.42 TCGA-CM-6171-01 2 99013338 99013338 C T CNGA3 Missense_Mutation p.R569C 0.49 deleterious(0.01) probably_damaging(0.995) TCGA-CM-6171-01 2 99443438 99443438 C T KIAA1211L Silent p.S245S 0.44 TCGA-CM-6171-01 2 99448838 99448838 G A KIAA1211L Silent p.H171H 0.32 TCGA-CM-6171-01 3 10049212 10049212 G A AC022007.5 RNA 0.39 TCGA-CM-6171-01 3 10443965 10443965 G A ATP2B2 Silent p.A155A 0.42 TCGA-CM-6171-01 3 108081186 108081186 T A HHLA2 Intron 0.37 TCGA-CM-6171-01 3 108353778 108353778 A - DZIP3 Frame_Shift_Del p.K294Sfs*5 0.32 TCGA-CM-6171-01 3 111705816 111705816 G A ABHD10 Missense_Mutation p.R165Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-CM-6171-01 3 112968656 112968656 C T BOC Missense_Mutation p.R3C 0.41 deleterious_low_confidence(0.03) benign(0.001) TCGA-CM-6171-01 3 113115487 113115487 T A WDR52 Missense_Mutation p.I553F 0.12 tolerated(0.33) benign(0.021) TCGA-CM-6171-01 3 113375160 113375160 T - KIAA2018 Frame_Shift_Del p.K1790Rfs*94 0.31 TCGA-CM-6171-01 3 113377483 113377483 T G KIAA2018 Missense_Mutation p.N1016H 0.37 benign(0.006) TCGA-CM-6171-01 3 113655208 113655208 C T GRAMD1C Nonsense_Mutation p.R518* 0.39 TCGA-CM-6171-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.36 TCGA-CM-6171-01 3 11596306 11596306 G A ATG7 Missense_Mutation p.E701K 0.34 deleterious(0.02) benign(0.305) TCGA-CM-6171-01 3 118917947 118917947 G - UPK1B Frame_Shift_Del p.V233Lfs*53 0.32 TCGA-CM-6171-01 3 120321036 120321036 T C NDUFB4 Intron 0.35 TCGA-CM-6171-01 3 124492640 124492640 G A ITGB5 Missense_Mutation p.R605C 0.40 deleterious(0) probably_damaging(0.959) TCGA-CM-6171-01 3 126062544 126062544 C T KLF15 3'UTR 0.47 TCGA-CM-6171-01 3 127441393 127441393 G A MGLL Silent p.S93S 0.37 TCGA-CM-6171-01 3 128181558 128181558 C T DNAJB8 Silent p.S177S 0.46 TCGA-CM-6171-01 3 130114089 130114089 G A COL6A5 Missense_Mutation p.G1117R 0.42 deleterious(0.04) benign(0.157) TCGA-CM-6171-01 3 130287018 130287018 T C COL6A6 Silent p.D657D 0.36 TCGA-CM-6171-01 3 132407489 132407492 CTTA - NPHP3 Splice_Site p.X1042_splice 0.45 TCGA-CM-6171-01 3 133306080 133306080 T - CDV3 Intron 0.32 TCGA-CM-6171-01 3 13612588 13612588 C - FBLN2 Frame_Shift_Del p.W247Gfs*27 0.20 TCGA-CM-6171-01 3 137790575 137790575 T C DZIP1L Missense_Mutation p.R509G 0.07 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 3 138178850 138178850 G A ESYT3 Missense_Mutation p.V238M 0.40 deleterious(0.03) probably_damaging(0.912) TCGA-CM-6171-01 3 138724952 138724952 G A PRR23A Silent p.A53A 0.40 TCGA-CM-6171-01 3 139094413 139094413 C T COPB2 Missense_Mutation p.G183E 0.39 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 3 143212594 143212595 - A SLC9A9 Frame_Shift_Ins p.V406Cfs*92 0.27 TCGA-CM-6171-01 3 150264498 150264499 - A EIF2A 5'UTR 0.32 TCGA-CM-6171-01 3 150416627 150416627 T C FAM194A Silent p.V168V 0.45 TCGA-CM-6171-01 3 151046142 151046142 T - P2RY13 Frame_Shift_Del p.V235Yfs*81 0.30 TCGA-CM-6171-01 3 151161075 151161075 A G IGSF10 Missense_Mutation p.L1887S 0.43 tolerated(0.05) possibly_damaging(0.596) TCGA-CM-6171-01 3 151163191 151163191 G - IGSF10 Frame_Shift_Del p.K1527Rfs*29 0.15 TCGA-CM-6171-01 3 15311222 15311222 T C SH3BP5 Missense_Mutation p.R165G 0.38 deleterious(0.02) benign(0.22) TCGA-CM-6171-01 3 156877696 156877697 CT - CCNL1 Frame_Shift_Del p.R63Afs*16 0.38 TCGA-CM-6171-01 3 16216504 16216504 A T GALNT15 5'UTR 0.58 TCGA-CM-6171-01 3 169998082 169998082 G A PRKCI Missense_Mutation p.R258Q 0.07 tolerated(0.07) probably_damaging(0.995) TCGA-CM-6171-01 3 169998104 169998104 T A PRKCI Nonsense_Mutation p.Y265* 0.09 TCGA-CM-6171-01 3 17056270 17056270 C T PLCL2 Missense_Mutation p.A836V 0.32 tolerated(0.49) benign(0.048) TCGA-CM-6171-01 3 170610956 170610956 A - EIF5A2 3'UTR 0.68 TCGA-CM-6171-01 3 171406584 171406584 A G PLD1 Missense_Mutation p.V474A 0.47 deleterious(0) benign(0.396) TCGA-CM-6171-01 3 173993228 173993228 T - NLGN1 Frame_Shift_Del p.F258Lfs*13 0.30 TCGA-CM-6171-01 3 173997182 173997182 A G NLGN1 Missense_Mutation p.Q464R 0.34 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 3 173998801 173998801 A C NLGN1 Missense_Mutation p.E727A 0.45 tolerated(0.15) probably_damaging(0.979) TCGA-CM-6171-01 3 178952007 178952007 A G PIK3CA Missense_Mutation p.Y1021C 0.37 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 3 183273326 183273326 A G KLHL6 Missense_Mutation p.V39A 0.39 tolerated(0.95) benign(0.004) TCGA-CM-6171-01 3 183547404 183547404 T - PARL Frame_Shift_Del p.G375Efs*12 0.33 TCGA-CM-6171-01 3 183705468 183705468 C G ABCC5 Intron 0.24 TCGA-CM-6171-01 3 183966873 183966873 T - ALG3 5'Flank 0.29 TCGA-CM-6171-01 3 184009861 184009861 G A ECE2 Silent p.S829S 0.31 TCGA-CM-6171-01 3 185867685 185867685 G A DGKG 3'UTR 0.38 TCGA-CM-6171-01 3 190578510 190578510 C T GMNC Silent p.L47L 0.44 TCGA-CM-6171-01 3 191097987 191097987 C T CCDC50 Missense_Mutation p.P339L 0.36 tolerated(0.28) benign(0.016) TCGA-CM-6171-01 3 195511671 195511671 G A MUC4 Silent p.T2260T 0.13 TCGA-CM-6171-01 3 195516068 195516068 A G MUC4 Missense_Mutation p.S795P 0.41 unknown(0) TCGA-CM-6171-01 3 195517640 195517640 C A MUC4 Missense_Mutation p.G271C 0.37 unknown(0) TCGA-CM-6171-01 3 195782070 195782070 C T TFRC Missense_Mutation p.A594T 0.37 deleterious(0.02) possibly_damaging(0.698) TCGA-CM-6171-01 3 195935385 195935385 C T ZDHHC19 Missense_Mutation p.R152H 0.08 deleterious(0.04) possibly_damaging(0.786) TCGA-CM-6171-01 3 196051395 196051395 G A TM4SF19 Intron 0.47 TCGA-CM-6171-01 3 196742377 196742377 G - MFI2 Frame_Shift_Del p.Y365Tfs*54 0.34 TCGA-CM-6171-01 3 196863427 196863427 C A DLG1 Missense_Mutation p.D369Y 0.38 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 3 20167508 20167508 A G KAT2B Missense_Mutation p.K509E 0.40 tolerated(0.06) benign(0.03) TCGA-CM-6171-01 3 21462662 21462663 - T ZNF385D 3'UTR 0.15 TCGA-CM-6171-01 3 25646314 25646314 A - TOP2B Frame_Shift_Del p.S1471Hfs*6 0.08 TCGA-CM-6171-01 3 25833012 25833012 T C OXSM Silent p.F167F 0.39 TCGA-CM-6171-01 3 27761733 27761733 G A EOMES Missense_Mutation p.A322V 0.30 tolerated(0.25) probably_damaging(0.954) TCGA-CM-6171-01 3 3067806 3067806 C - CNTN4 Frame_Shift_Del p.P504Lfs*18 0.26 TCGA-CM-6171-01 3 32032642 32032642 C T ZNF860 3'UTR 0.39 TCGA-CM-6171-01 3 33863474 33863474 G A PDCD6IP Missense_Mutation p.S121N 0.32 deleterious(0.01) benign(0.28) TCGA-CM-6171-01 3 37070349 37070349 C - MLH1 Frame_Shift_Del p.R497Gfs*11 0.29 TCGA-CM-6171-01 3 38043297 38043297 C T VILL Silent p.G475G 0.43 TCGA-CM-6171-01 3 38044779 38044779 C T VILL Missense_Mutation p.R594W 0.41 deleterious(0.01) benign(0.014) TCGA-CM-6171-01 3 38051258 38051258 C - PLCD1 Frame_Shift_Del p.L466Sfs*29 0.51 TCGA-CM-6171-01 3 38125714 38125714 G A DLEC1 Silent p.T413T 0.36 TCGA-CM-6171-01 3 3888691 3888691 T - LRRN1 3'UTR 0.36 TCGA-CM-6171-01 3 40231478 40231478 A C MYRIP Missense_Mutation p.S397R 0.31 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 3 42229576 42229576 C T TRAK1 Silent p.L174L 0.38 TCGA-CM-6171-01 3 42265238 42265238 G - TRAK1 3'UTR 0.33 TCGA-CM-6171-01 3 44489580 44489580 C A ZNF445 Missense_Mutation p.C528F 0.46 tolerated(0.17) possibly_damaging(0.639) TCGA-CM-6171-01 3 44827940 44827940 C T KIF15 Silent p.N171N 0.39 TCGA-CM-6171-01 3 45718574 45718574 C T LIMD1 3'UTR 0.32 TCGA-CM-6171-01 3 45801358 45801358 G A SLC6A20 Silent p.D540D 0.39 TCGA-CM-6171-01 3 46063023 46063023 G A XCR1 Silent p.R139R 0.44 TCGA-CM-6171-01 3 47307238 47307238 C T KIF9 Missense_Mutation p.A300T 0.36 tolerated(0.12) possibly_damaging(0.473) TCGA-CM-6171-01 3 48459731 48459731 G A PLXNB1 Missense_Mutation p.R1031C 0.33 deleterious(0) possibly_damaging(0.708) TCGA-CM-6171-01 3 4859909 4859909 G A ITPR1 Missense_Mutation p.V2656M 0.37 deleterious(0) possibly_damaging(0.807) TCGA-CM-6171-01 3 48601764 48601764 G - COL7A1 3'UTR 0.33 TCGA-CM-6171-01 3 48629644 48629644 C A COL7A1 Missense_Mutation p.Q377H 0.16 unknown(0) TCGA-CM-6171-01 3 48699632 48699632 C A CELSR3 Nonsense_Mutation p.G146* 0.55 TCGA-CM-6171-01 3 49149770 49149770 C A USP19 Missense_Mutation p.E902D 0.41 tolerated(0.14) benign(0.101) TCGA-CM-6171-01 3 49395603 49395603 C T GPX1 Missense_Mutation p.G37S 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-CM-6171-01 3 49881329 49881329 C T TRAIP Missense_Mutation p.D105N 0.45 tolerated(0.06) benign(0.394) TCGA-CM-6171-01 3 49934243 49934243 C - MST1R Frame_Shift_Del p.G755Vfs*19 0.42 TCGA-CM-6171-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.51 TCGA-CM-6171-01 3 51673506 51673506 C T RAD54L2 Silent p.D644D 0.45 TCGA-CM-6171-01 3 51673633 51673633 G A RAD54L2 Missense_Mutation p.V687I 0.42 tolerated(0.59) benign(0.004) TCGA-CM-6171-01 3 51737853 51737853 G A TEX264 Missense_Mutation p.G255S 0.51 tolerated(0.45) benign(0.013) TCGA-CM-6171-01 3 52428601 52428601 T G DNAH1 Missense_Mutation p.F3583V 0.43 probably_damaging(0.994) TCGA-CM-6171-01 3 5243503 5243503 T C EDEM1 Missense_Mutation p.M251T 0.42 deleterious(0.05) benign(0.281) TCGA-CM-6171-01 3 54930713 54930713 G A CACNA2D3 Intron 0.42 TCGA-CM-6171-01 3 57391558 57391558 G A DNAH12 Missense_Mutation p.A2114V 0.40 tolerated(0.05) benign(0.002) TCGA-CM-6171-01 3 57542404 57542404 C T PDE12 Missense_Mutation p.P100S 0.11 tolerated(0.09) benign(0.001) TCGA-CM-6171-01 3 63982081 63982081 C T ATXN7 Silent p.A861A 0.05 TCGA-CM-6171-01 3 64673360 64673360 C - ADAMTS9 5'UTR 0.34 TCGA-CM-6171-01 3 65342510 65342510 C T MAGI1 Missense_Mutation p.R1311H 0.53 tolerated(0.18) benign(0.016) TCGA-CM-6171-01 3 69088067 69088067 G A TMF1 Missense_Mutation p.R641C 0.14 deleterious(0) possibly_damaging(0.656) TCGA-CM-6171-01 3 75480028 75480028 C T RP11-803B1.8 5'Flank 0.38 TCGA-CM-6171-01 3 7620173 7620173 G A GRM7 Missense_Mutation p.C527Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 3 89390929 89390929 T C EPHA3 Missense_Mutation p.V332A 0.33 tolerated(0.13) benign(0.341) TCGA-CM-6171-01 3 89480469 89480469 G A EPHA3 Missense_Mutation p.R769H 0.40 deleterious(0) probably_damaging(0.994) TCGA-CM-6171-01 3 96706271 96706271 C A EPHA6 Missense_Mutation p.T183K 0.38 deleterious(0) possibly_damaging(0.493) TCGA-CM-6171-01 3 97611839 97611839 T C CRYBG3 Splice_Site p.X577_splice 0.40 TCGA-CM-6171-01 3 98538221 98538221 C T DCBLD2 Silent p.A304A 0.42 TCGA-CM-6171-01 3 99514992 99514993 - A COL8A1 3'UTR 0.20 TCGA-CM-6171-01 4 103947654 103947654 A - SLC9B2 Frame_Shift_Del p.L496Cfs*50 0.27 TCGA-CM-6171-01 4 10446745 10446746 - T ZNF518B Frame_Shift_Ins p.T403Nfs*7 0.28 TCGA-CM-6171-01 4 108816790 108816790 C T SGMS2 Silent p.P27P 0.43 TCGA-CM-6171-01 4 110897352 110897352 G A EGF Missense_Mutation p.D672N 0.35 deleterious(0.03) probably_damaging(1) TCGA-CM-6171-01 4 118006146 118006147 - A TRAM1L1 Frame_Shift_Ins p.W135Lfs*9 0.27 TCGA-CM-6171-01 4 118006690 118006690 A - TRAM1L1 5'UTR 0.47 TCGA-CM-6171-01 4 122738083 122738083 T - CCNA2 3'UTR 0.29 TCGA-CM-6171-01 4 123813399 123813399 C T FGF2 Nonsense_Mutation p.R239* 0.41 TCGA-CM-6171-01 4 1244607 1244607 G A CTBP1 5'Flank 0.42 TCGA-CM-6171-01 4 125592250 125592250 C T ANKRD50 Missense_Mutation p.A728T 0.34 tolerated(0.31) benign(0.094) TCGA-CM-6171-01 4 125631412 125631412 G T ANKRD50 Silent p.A85A 0.40 TCGA-CM-6171-01 4 126238585 126238585 T C FAT4 Missense_Mutation p.L340P 0.32 possibly_damaging(0.797) TCGA-CM-6171-01 4 126412691 126412691 C - FAT4 Frame_Shift_Del p.Q4906Rfs*14 0.35 TCGA-CM-6171-01 4 128694548 128694548 A G SLC25A31 Missense_Mutation p.E256G 0.34 tolerated(0.18) possibly_damaging(0.716) TCGA-CM-6171-01 4 129783052 129783052 C - JADE1 Frame_Shift_Del p.R394Gfs*20 0.37 TCGA-CM-6171-01 4 1326634 1326634 C T MAEA Missense_Mutation p.T249M 0.40 deleterious(0.01) probably_damaging(0.954) TCGA-CM-6171-01 4 134071931 134071931 A G PCDH10 Silent p.V212V 0.55 TCGA-CM-6171-01 4 144445530 144445530 C T SMARCA5 Missense_Mutation p.R144C 0.37 deleterious(0) benign(0.189) TCGA-CM-6171-01 4 147363833 147363833 A G SLC10A7 Intron 0.42 TCGA-CM-6171-01 4 148968111 148968111 C A ARHGAP10 Missense_Mutation p.P646T 0.50 tolerated(0.1) probably_damaging(0.996) TCGA-CM-6171-01 4 149357478 149357478 C T NR3C2 Missense_Mutation p.A179T 0.42 tolerated_low_confidence(0.61) benign(0.002) TCGA-CM-6171-01 4 151186710 151186711 AA - LRBA 3'UTR 0.31 TCGA-CM-6171-01 4 155264726 155264726 C T DCHS2 Silent p.K291K 0.39 TCGA-CM-6171-01 4 15689376 15689377 - T FAM200B Frame_Shift_Ins p.L261Ffs*25 0.33 TCGA-CM-6171-01 4 158254407 158254407 G A GRIA2 Missense_Mutation p.V353I 0.34 tolerated(1) benign(0.005) TCGA-CM-6171-01 4 16168368 16168368 C T TAPT1 Silent p.S454S 0.42 TCGA-CM-6171-01 4 174450267 174450267 G A HAND2 Silent p.Y58Y 0.42 TCGA-CM-6171-01 4 1843480 1843480 G A LETM1 Missense_Mutation p.T63I 0.19 tolerated(0.43) benign(0.001) TCGA-CM-6171-01 4 186544982 186544982 A G SORBS2 Missense_Mutation p.M630T 0.38 tolerated(0.68) benign(0.006) TCGA-CM-6171-01 4 187122341 187122341 G A CYP4V2 Missense_Mutation p.A278T 0.24 tolerated(0.57) benign(0.005) TCGA-CM-6171-01 4 187158051 187158051 T - KLKB1 Frame_Shift_Del p.S151Hfs*18 0.32 TCGA-CM-6171-01 4 188923962 188923962 A G ZFP42 Translation_Start_Site p.M1? 0.40 deleterious(0) probably_damaging(0.97) TCGA-CM-6171-01 4 189013097 189013097 T C TRIML2 Splice_Site p.X199_splice 0.38 TCGA-CM-6171-01 4 2272351 2272351 G A ZFYVE28 3'UTR 0.30 TCGA-CM-6171-01 4 24534564 24534564 G A DHX15 Missense_Mutation p.R675C 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-CM-6171-01 4 39448254 39448254 C T KLB Silent p.S636S 0.46 TCGA-CM-6171-01 4 4322534 4322534 G A ZBTB49 Missense_Mutation p.E597K 0.48 tolerated(0.15) benign(0.033) TCGA-CM-6171-01 4 48385778 48385778 G A SLAIN2 Missense_Mutation p.R446H 0.40 deleterious(0) probably_damaging(0.996) TCGA-CM-6171-01 4 55991558 55991558 C T KDR 5'UTR 0.50 TCGA-CM-6171-01 4 5696177 5696177 G T EVC2 Missense_Mutation p.P112Q 0.40 deleterious(0.03) possibly_damaging(0.708) TCGA-CM-6171-01 4 5803748 5803748 G A EVC Silent p.A792A 0.41 TCGA-CM-6171-01 4 5862838 5862838 C T CRMP1 Silent p.L190L 0.37 TCGA-CM-6171-01 4 5966839 5966839 C T C4orf50 Missense_Mutation p.S638N 0.29 tolerated(0.14) benign(0.068) TCGA-CM-6171-01 4 673734 673734 C T MYL5 Silent p.D73D 0.43 TCGA-CM-6171-01 4 677027 677027 C - MFSD7 Frame_Shift_Del p.A375Lfs*5 0.37 TCGA-CM-6171-01 4 68449312 68449312 G A STAP1 Missense_Mutation p.R184Q 0.43 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 4 69978272 69978272 C A UGT2B7 Missense_Mutation p.H470N 0.43 tolerated(0.09) benign(0.398) TCGA-CM-6171-01 4 70146396 70146396 G A UGT2B28 Missense_Mutation p.A60T 0.40 tolerated(0.08) benign(0.042) TCGA-CM-6171-01 4 70346234 70346234 T A UGT2B4 3'UTR 0.40 TCGA-CM-6171-01 4 71115175 71115175 A - CSN3 Frame_Shift_Del 0.28 TCGA-CM-6171-01 4 77253585 77253585 C A CCDC158 Missense_Mutation p.R957I 0.34 tolerated(0.23) benign(0.277) TCGA-CM-6171-01 4 77660524 77660524 C T SHROOM3 Missense_Mutation p.R400W 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6171-01 4 77661514 77661514 G A SHROOM3 Missense_Mutation p.G730S 0.47 tolerated(1) benign(0.002) TCGA-CM-6171-01 4 82061809 82061810 - T PRKG2 Frame_Shift_Ins p.N474Kfs*2 0.32 TCGA-CM-6171-01 4 82348899 82348900 - G RASGEF1B 3'UTR 0.41 TCGA-CM-6171-01 4 87691032 87691032 A - PTPN13 Frame_Shift_Del p.K1540Sfs*16 0.29 TCGA-CM-6171-01 4 87746686 87746686 A G SLC10A6 Missense_Mutation p.M269T 0.40 deleterious(0) benign(0.165) TCGA-CM-6171-01 4 92520061 92520061 G A CCSER1 Silent p.T852T 0.36 TCGA-CM-6171-01 4 9785349 9785349 G C DRD5 3'UTR 0.35 TCGA-CM-6171-01 5 102465317 102465317 C T PPIP5K2 Silent p.F8F 0.62 TCGA-CM-6171-01 5 115177404 115177404 G A ATG12 5'UTR 0.44 TCGA-CM-6171-01 5 120022383 120022383 G A PRR16 Silent p.K275K 0.31 TCGA-CM-6171-01 5 131995902 131995902 C A IL13 Silent p.I123I 0.35 TCGA-CM-6171-01 5 137045503 137045503 G C KLHL3 Silent p.V59V 0.16 TCGA-CM-6171-01 5 137500542 137500542 G C BRD8 Missense_Mutation p.A531G 0.41 tolerated(0.19) benign(0.027) TCGA-CM-6171-01 5 137735695 137735695 C T KDM3B Missense_Mutation p.R1065C 0.34 deleterious(0) possibly_damaging(0.487) TCGA-CM-6171-01 5 137801409 137801409 C - EGR1 5'UTR 0.38 TCGA-CM-6171-01 5 138715648 138715648 A G SLC23A1 Silent p.F259F 0.38 TCGA-CM-6171-01 5 13919383 13919383 T - DNAH5 Frame_Shift_Del p.R293Dfs*12 0.28 TCGA-CM-6171-01 5 139260459 139260459 G A NRG2 Missense_Mutation p.R325W 0.34 deleterious(0.04) possibly_damaging(0.892) TCGA-CM-6171-01 5 139715538 139715538 T C HBEGF Missense_Mutation p.D158G 0.34 deleterious(0.01) possibly_damaging(0.501) TCGA-CM-6171-01 5 140047854 140047854 A T WDR55 Missense_Mutation p.E76V 0.31 deleterious(0.01) possibly_damaging(0.714) TCGA-CM-6171-01 5 140167213 140167213 C T PCDHA1 Silent p.A446A 0.41 TCGA-CM-6171-01 5 140188278 140188278 C T PCDHA4 Silent p.R502R 0.47 TCGA-CM-6171-01 5 140221526 140221526 C T PCDHA8 Missense_Mutation p.A207V 0.35 tolerated_low_confidence(0.06) benign(0.003) TCGA-CM-6171-01 5 140229250 140229250 G A PCDHA9 Silent p.T390T 0.42 TCGA-CM-6171-01 5 140237685 140237685 C T PCDHA10 Silent p.G684G 0.35 TCGA-CM-6171-01 5 140250185 140250185 C T PCDHA11 Silent p.G499G 0.40 TCGA-CM-6171-01 5 140256774 140256774 G A PCDHA12 Missense_Mutation p.A573T 0.44 tolerated_low_confidence(0.4) benign(0.007) TCGA-CM-6171-01 5 140264089 140264089 G T PCDHA13 Missense_Mutation p.G746W 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-6171-01 5 140553669 140553669 A G PCDHB7 Missense_Mutation p.N418S 0.33 deleterious_low_confidence(0.02) benign(0.171) TCGA-CM-6171-01 5 140711778 140711778 C T PCDHGA1 Silent p.S509S 0.42 TCGA-CM-6171-01 5 140730058 140730058 G A PCDHGB1 Silent p.E77E 0.45 TCGA-CM-6171-01 5 140735404 140735404 A G PCDHGA4 Missense_Mutation p.T213A 0.39 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-CM-6171-01 5 140856283 140856283 C T PCDHGC3 Silent p.R200R 0.31 TCGA-CM-6171-01 5 140953309 140953309 G - DIAPH1 Frame_Shift_Del p.P703Hfs*65 0.40 TCGA-CM-6171-01 5 141024222 141024222 A G FCHSD1 Silent p.P520P 0.39 TCGA-CM-6171-01 5 141033742 141033743 - G ARAP3 Frame_Shift_Ins p.S1471Ffs*82 0.44 TCGA-CM-6171-01 5 14316781 14316781 A G TRIO Missense_Mutation p.I554V 0.35 benign(0.008) TCGA-CM-6171-01 5 14481695 14481695 A G TRIO Missense_Mutation p.M2145V 0.38 benign(0) TCGA-CM-6171-01 5 145719542 145719542 G A POU4F3 Silent p.P184P 0.41 TCGA-CM-6171-01 5 156184714 156184714 A G SGCD Missense_Mutation p.E233G 0.44 tolerated(0.27) possibly_damaging(0.547) TCGA-CM-6171-01 5 158526545 158526545 A G EBF1 5'UTR 0.10 TCGA-CM-6171-01 5 16666788 16666788 C T MYO10 3'UTR 0.14 TCGA-CM-6171-01 5 166711917 166711917 C A TENM2 Silent p.S25S 0.45 TCGA-CM-6171-01 5 167937622 167937622 C T RARS Silent p.R461R 0.14 TCGA-CM-6171-01 5 168114005 168114005 C T SLIT3 Missense_Mutation p.C1098Y 0.44 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 5 168271605 168271605 G A SLIT3 Missense_Mutation p.R181C 0.48 deleterious(0) probably_damaging(0.932) TCGA-CM-6171-01 5 176289755 176289755 C T UNC5A Silent p.A67A 0.39 TCGA-CM-6171-01 5 176885434 176885434 G A DBN1 Silent p.N469N 0.41 TCGA-CM-6171-01 5 178413640 178413640 G A GRM6 Missense_Mutation p.H539Y 0.28 tolerated(1) probably_damaging(0.916) TCGA-CM-6171-01 5 179331735 179331735 G T TBC1D9B Missense_Mutation p.Q66K 0.39 deleterious(0.01) benign(0.119) TCGA-CM-6171-01 5 179563540 179563540 G A RASGEF1C Intron 0.45 TCGA-CM-6171-01 5 180276773 180276774 - GA ZFP62 Frame_Shift_Ins p.S575Rfs*4 0.39 TCGA-CM-6171-01 5 180480956 180480956 G A BTNL9 Intron 0.54 TCGA-CM-6171-01 5 226053 226053 G A SDHA Missense_Mutation p.R171H 0.36 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-CM-6171-01 5 23527347 23527347 A G PRDM9 Missense_Mutation p.E717G 0.38 deleterious(0) probably_damaging(0.997) TCGA-CM-6171-01 5 24487659 24487659 A - CDH10 3'UTR 0.35 TCGA-CM-6171-01 5 31294303 31294303 A G CDH6 Missense_Mutation p.N155D 0.40 deleterious(0) probably_damaging(0.974) TCGA-CM-6171-01 5 32143901 32143901 T G GOLPH3 Missense_Mutation p.Q104P 0.30 tolerated(0.23) benign(0.006) TCGA-CM-6171-01 5 32229919 32229919 G A MTMR12 Nonsense_Mutation p.R737* 0.37 TCGA-CM-6171-01 5 32407032 32407032 T A ZFR Silent p.A293A 0.32 TCGA-CM-6171-01 5 33936873 33936873 G T RXFP3 Missense_Mutation p.A10S 0.40 tolerated_low_confidence(0.06) benign(0.025) TCGA-CM-6171-01 5 35003945 35003945 G A AGXT2 Missense_Mutation p.R454C 0.41 tolerated(0.07) benign(0.001) TCGA-CM-6171-01 5 35875701 35875701 T G IL7R Intron 0.37 TCGA-CM-6171-01 5 37164385 37164385 G A C5orf42 Silent p.D2526D 0.43 TCGA-CM-6171-01 5 37605238 37605239 - A WDR70 Frame_Shift_Ins p.V333Sfs*9 0.30 TCGA-CM-6171-01 5 38493781 38493781 C T LIFR Silent p.S664S 0.38 TCGA-CM-6171-01 5 38925441 38925441 C T OSMR Missense_Mutation p.T727M 0.37 deleterious(0.03) possibly_damaging(0.723) TCGA-CM-6171-01 5 38960005 38960005 C T RICTOR Missense_Mutation p.E643K 0.37 deleterious(0.04) benign(0.408) TCGA-CM-6171-01 5 44388582 44388582 C T FGF10 Missense_Mutation p.R68Q 0.48 deleterious(0) benign(0.325) TCGA-CM-6171-01 5 60050220 60050220 A - ELOVL7 3'UTR 0.45 TCGA-CM-6171-01 5 63256285 63256285 C T HTR1A Missense_Mutation p.R421H 0.57 deleterious(0) possibly_damaging(0.882) TCGA-CM-6171-01 5 64920749 64920749 T C CTC-534A2.2 5'UTR 0.50 TCGA-CM-6171-01 5 66479777 66479777 G T CD180 Silent p.T298T 0.38 TCGA-CM-6171-01 5 70855847 70855847 G T BDP1 Nonsense_Mutation p.G2427* 0.43 TCGA-CM-6171-01 5 71493247 71493247 A C MAP1B Missense_Mutation p.K1355N 0.43 probably_damaging(0.997) TCGA-CM-6171-01 5 73931270 73931270 C - ENC1 Frame_Shift_Del p.R348Gfs*39 0.27 TCGA-CM-6171-01 5 73932133 73932133 G A ENC1 Missense_Mutation p.H60Y 0.45 deleterious(0) probably_damaging(0.996) TCGA-CM-6171-01 5 74981104 74981104 G A POC5 Silent p.S445S 0.34 TCGA-CM-6171-01 5 78975432 78975432 A T PAPD4 Missense_Mutation p.E413D 0.45 tolerated(0.17) probably_damaging(0.974) TCGA-CM-6171-01 5 79027039 79027039 T C CMYA5 Silent p.N817N 0.38 TCGA-CM-6171-01 5 79029481 79029481 G A CMYA5 Silent p.P1631P 0.42 TCGA-CM-6171-01 5 79366207 79366207 C T THBS4 Missense_Mutation p.P476S 0.35 tolerated(0.29) benign(0.008) TCGA-CM-6171-01 5 86627206 86627206 G A RASA1 Missense_Mutation p.R194H 0.45 deleterious(0) probably_damaging(0.996) TCGA-CM-6171-01 5 89854632 89854632 C T GPR98 5'UTR 0.46 TCGA-CM-6171-01 5 89968433 89968433 T - GPR98 Frame_Shift_Del p.Y1610Tfs*36 0.31 TCGA-CM-6171-01 5 89981704 89981704 C T GPR98 Nonsense_Mutation p.R2128* 0.44 TCGA-CM-6171-01 6 106536155 106536155 T C PRDM1 Missense_Mutation p.M41T 0.33 tolerated(0.97) benign(0.001) TCGA-CM-6171-01 6 106967505 106967505 A G AIM1 Missense_Mutation p.K400E 0.43 tolerated_low_confidence(0.24) benign(0.004) TCGA-CM-6171-01 6 107096993 107096993 C T QRSL1 Silent p.S158S 0.39 TCGA-CM-6171-01 6 107390757 107390757 G A BEND3 Silent p.F546F 0.43 TCGA-CM-6171-01 6 107390787 107390787 G A BEND3 Silent p.F536F 0.31 TCGA-CM-6171-01 6 107391243 107391243 G T BEND3 Missense_Mutation p.S384R 0.32 tolerated(0.18) benign(0.391) TCGA-CM-6171-01 6 107955296 107955296 G A SOBP Silent p.P416P 0.52 TCGA-CM-6171-01 6 108372296 108372297 - T OSTM1 Frame_Shift_Ins p.M241Nfs*3 0.31 TCGA-CM-6171-01 6 109285402 109285402 G A ARMC2 Silent p.A724A 0.07 TCGA-CM-6171-01 6 110434649 110434649 C A WASF1 Missense_Mutation p.D50Y 0.36 deleterious(0) unknown(0) TCGA-CM-6171-01 6 110746116 110746116 G A SLC22A16 Missense_Mutation p.T565M 0.43 tolerated(0.24) benign(0.005) TCGA-CM-6171-01 6 111543525 111543525 T - SLC16A10 3'UTR 0.24 TCGA-CM-6171-01 6 111694477 111694477 T - REV3L Frame_Shift_Del p.N1694Mfs*4 0.20 TCGA-CM-6171-01 6 112402337 112402337 G A TUBE1 Missense_Mutation p.T95M 0.46 deleterious(0.04) benign(0.345) TCGA-CM-6171-01 6 116542291 116542291 A - NT5DC1 Frame_Shift_Del p.K203Nfs*6 0.35 TCGA-CM-6171-01 6 116574217 116574217 A G TSPYL4 Missense_Mutation p.S319P 0.17 tolerated(0.17) benign(0.393) TCGA-CM-6171-01 6 117890831 117890831 G A GOPC Silent p.C327C 0.44 TCGA-CM-6171-01 6 121769943 121769943 C A GJA1 3'UTR 0.33 TCGA-CM-6171-01 6 125404293 125404293 T A RNF217 3'UTR 0.50 TCGA-CM-6171-01 6 128150792 128150792 G A THEMIS Missense_Mutation p.R180C 0.34 tolerated(0.16) possibly_damaging(0.711) TCGA-CM-6171-01 6 139202243 139202243 G A ECT2L Silent p.A605A 0.37 TCGA-CM-6171-01 6 146875761 146875761 T C RAB32 3'UTR 0.33 TCGA-CM-6171-01 6 146875763 146875763 G T RAB32 3'UTR 0.34 TCGA-CM-6171-01 6 149862686 149862686 T C PPIL4 Missense_Mutation p.Y36C 0.42 deleterious(0) probably_damaging(0.997) TCGA-CM-6171-01 6 151161857 151161857 G A PLEKHG1 Missense_Mutation p.R1328H 0.45 deleterious(0.02) benign(0) TCGA-CM-6171-01 6 151673902 151673902 A - AKAP12 Frame_Shift_Del p.N1461Mfs*26 0.32 TCGA-CM-6171-01 6 152719795 152719795 C T SYNE1 Missense_Mutation p.G2437S 0.38 probably_damaging(0.999) TCGA-CM-6171-01 6 15501591 15501591 A G JARID2 Missense_Mutation p.E800G 0.75 deleterious(0.03) benign(0.118) TCGA-CM-6171-01 6 157405960 157405960 C - ARID1B Frame_Shift_Del p.P735Hfs*10 0.27 TCGA-CM-6171-01 6 157521963 157521963 C T ARID1B Missense_Mutation p.S1412L 0.32 benign(0.239) TCGA-CM-6171-01 6 158502144 158502144 T C SYNJ2 Silent p.P857P 0.56 TCGA-CM-6171-01 6 158551405 158551405 C A SERAC1 Missense_Mutation p.E284D 0.32 deleterious(0.04) benign(0.093) TCGA-CM-6171-01 6 158900834 158900834 G A TULP4 Missense_Mutation p.A360T 0.38 deleterious(0.03) possibly_damaging(0.678) TCGA-CM-6171-01 6 160207020 160207020 C T TCP1 Missense_Mutation p.A97T 0.42 deleterious(0) probably_damaging(0.998) TCGA-CM-6171-01 6 160221785 160221785 T - PNLDC1 Frame_Shift_Del p.F10Lfs*9 0.33 TCGA-CM-6171-01 6 160241521 160241521 C T PNLDC1 Missense_Mutation p.A512V 0.39 tolerated(0.17) benign(0.254) TCGA-CM-6171-01 6 160481583 160481583 C T IGF2R Silent p.T1032T 0.39 TCGA-CM-6171-01 6 160874534 160874534 G A SLC22A3 3'Flank 0.38 TCGA-CM-6171-01 6 16129634 16129634 C A MYLIP Silent p.L27L 0.09 TCGA-CM-6171-01 6 29574954 29574954 G A GABBR1 Silent p.Y678Y 0.87 TCGA-CM-6171-01 6 31079759 31079759 C T C6orf15 Missense_Mutation p.R126H 0.81 tolerated(1) benign(0) TCGA-CM-6171-01 6 33178990 33178990 G - RING1 Frame_Shift_Del p.E173Kfs*14 0.53 TCGA-CM-6171-01 6 33179214 33179214 C - RING1 Frame_Shift_Del p.P247Qfs*38 0.76 TCGA-CM-6171-01 6 34496589 34496589 G A PACSIN1 Missense_Mutation p.E131K 0.34 deleterious(0) benign(0.317) TCGA-CM-6171-01 6 35280448 35280448 C T DEF6 Missense_Mutation p.R236C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 6 37626093 37626093 C T MDGA1 Missense_Mutation p.G104S 0.16 deleterious(0.03) possibly_damaging(0.869) TCGA-CM-6171-01 6 42819857 42819857 T C GLTSCR1L Missense_Mutation p.S623P 0.69 tolerated(0.05) benign(0.009) TCGA-CM-6171-01 6 46996762 46996762 G T GPR110 Missense_Mutation p.F12L 0.87 tolerated_low_confidence(0.27) benign(0.012) TCGA-CM-6171-01 6 47251813 47251813 G A TNFRSF21 Silent p.C368C 0.79 TCGA-CM-6171-01 6 49419294 49419294 C T MUT Missense_Mutation p.R406K 0.72 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-6171-01 6 54805116 54805116 G A FAM83B Silent p.A449A 0.83 TCGA-CM-6171-01 6 56467809 56467809 A G DST Intron 0.76 TCGA-CM-6171-01 6 64436464 64436464 G A EYS Silent p.L2727L 0.41 TCGA-CM-6171-01 6 74117732 74117732 A - DDX43 Frame_Shift_Del p.G365Vfs*2 0.35 TCGA-CM-6171-01 6 7605660 7605660 G A SNRNP48 Missense_Mutation p.M249I 0.14 tolerated(0.18) probably_damaging(0.942) TCGA-CM-6171-01 6 76751763 76751763 T A IMPG1 Nonsense_Mutation p.K50* 0.41 TCGA-CM-6171-01 6 86350030 86350030 A - SYNCRIP Frame_Shift_Del p.L95Yfs*5 0.34 TCGA-CM-6171-01 6 87965084 87965084 T A ZNF292 Missense_Mutation p.N579K 0.43 tolerated(0.15) benign(0.232) TCGA-CM-6171-01 6 87965372 87965372 A C ZNF292 Silent p.P675P 0.38 TCGA-CM-6171-01 6 90371890 90371890 C T MDN1 Silent p.Q4827Q 0.05 TCGA-CM-6171-01 6 90405336 90405336 G A MDN1 Silent p.Y3253Y 0.17 TCGA-CM-6171-01 6 90577882 90577883 - AT CASP8AP2 RNA 0.42 TCGA-CM-6171-01 7 100959805 100959805 C T RABL5 Silent p.P75P 0.43 TCGA-CM-6171-01 7 101916756 101916756 G A CUX1 Missense_Mutation p.D457N 0.46 tolerated(0.26) probably_damaging(0.93) TCGA-CM-6171-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.40 TCGA-CM-6171-01 7 103805692 103805692 T - ORC5 Frame_Shift_Del p.K343Nfs*17 0.28 TCGA-CM-6171-01 7 104731691 104731691 A - KMT2E Frame_Shift_Del p.T553Lfs*7 0.33 TCGA-CM-6171-01 7 104782564 104782564 G A SRPK2 Silent p.C478C 0.54 TCGA-CM-6171-01 7 105673231 105673231 A G CDHR3 3'UTR 0.59 TCGA-CM-6171-01 7 107830174 107830174 G - NRCAM Frame_Shift_Del p.F651Lfs*3 0.31 TCGA-CM-6171-01 7 1098161 1098161 A G GPR146 3'UTR 0.41 TCGA-CM-6171-01 7 114174680 114174680 G T FOXP2 Missense_Mutation p.Q59H 0.45 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CM-6171-01 7 120385969 120385969 A - KCND2 Frame_Shift_Del p.T537Lfs*40 0.34 TCGA-CM-6171-01 7 120782099 120782099 C T CPED1 Silent p.H653H 0.37 TCGA-CM-6171-01 7 122338855 122338855 C T RNF133 Missense_Mutation p.A40T 0.33 deleterious(0) probably_damaging(0.995) TCGA-CM-6171-01 7 123264805 123264805 A G ASB15 Missense_Mutation p.T212A 0.46 deleterious(0) probably_damaging(0.954) TCGA-CM-6171-01 7 123302975 123302976 - CCT LMOD2 In_Frame_Ins p.P448dup 0.35 TCGA-CM-6171-01 7 123332484 123332485 - T WASL Frame_Shift_Ins p.V422Sfs*31 0.38 TCGA-CM-6171-01 7 124404799 124404799 C - GPR37 Frame_Shift_Del p.A78Qfs*93 0.59 TCGA-CM-6171-01 7 128486120 128486120 G A FLNC Silent p.T1289T 0.46 TCGA-CM-6171-01 7 128533918 128533918 G A KCP RNA 0.14 TCGA-CM-6171-01 7 129395150 129395150 A T NRF1 3'UTR 0.33 TCGA-CM-6171-01 7 130418165 130418165 G A KLF14 Silent p.C232C 0.47 TCGA-CM-6171-01 7 135099136 135099136 C T CNOT4 Missense_Mutation p.A169T 0.40 deleterious(0) probably_damaging(0.987) TCGA-CM-6171-01 7 138279285 138279285 A - SVOPL 3'Flank 0.31 TCGA-CM-6171-01 7 140218374 140218374 T C DENND2A 3'UTR 0.50 TCGA-CM-6171-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-CM-6171-01 7 141889277 141889277 G A RP11-1220K2.2 Missense_Mutation p.G1440R 0.18 probably_damaging(0.998) TCGA-CM-6171-01 7 143510108 143510108 C T RP11-61L23.2 RNA 0.21 TCGA-CM-6171-01 7 144077006 144077006 G A ARHGEF5 Missense_Mutation p.V1551M 0.28 tolerated(0.35) benign(0.269) TCGA-CM-6171-01 7 149128942 149128942 G - ZNF777 Frame_Shift_Del p.C808Afs*137 0.56 TCGA-CM-6171-01 7 149172531 149172531 C A ZNF746 Missense_Mutation p.E294D 0.49 tolerated(0.09) probably_damaging(0.953) TCGA-CM-6171-01 7 149480389 149480389 G A SSPO RNA 0.41 TCGA-CM-6171-01 7 149486705 149486705 C - SSPO RNA 0.33 TCGA-CM-6171-01 7 149493597 149493597 G A SSPO RNA 0.54 TCGA-CM-6171-01 7 149521648 149521648 G A SSPO RNA 0.44 TCGA-CM-6171-01 7 149575844 149575844 G A ATP6V0E2 Intron 0.37 TCGA-CM-6171-01 7 150035770 150035770 G - RARRES2 Frame_Shift_Del p.H146Tfs*? 0.27 TCGA-CM-6171-01 7 150070165 150070165 G A REPIN1 3'Flank 0.41 TCGA-CM-6171-01 7 150217558 150217558 G A GIMAP7 Missense_Mutation p.A166T 0.46 deleterious(0.02) possibly_damaging(0.764) TCGA-CM-6171-01 7 150731636 150731636 C T ABCB8 Silent p.G203G 0.37 TCGA-CM-6171-01 7 150737668 150737668 C T ABCB8 Silent p.C445C 0.08 TCGA-CM-6171-01 7 150745918 150745919 CT - ASIC3 5'Flank 0.16 TCGA-CM-6171-01 7 151135132 151135132 G A CRYGN Missense_Mutation p.R74C 0.45 tolerated(0.2) benign(0.031) TCGA-CM-6171-01 7 1538435 1538435 C T INTS1 Silent p.T397T 0.21 TCGA-CM-6171-01 7 154002621 154002621 G A DPP6 Intron 0.40 TCGA-CM-6171-01 7 155534775 155534777 AAG - RBM33 In_Frame_Del p.E773del 0.40 TCGA-CM-6171-01 7 158560360 158560360 C T ESYT2 Silent p.R351R 0.45 TCGA-CM-6171-01 7 21939669 21939669 A - DNAH11 Frame_Shift_Del p.T4421Qfs*72 0.42 TCGA-CM-6171-01 7 22999970 22999970 C A FAM126A Missense_Mutation p.R299M 0.42 tolerated(0.13) probably_damaging(0.984) TCGA-CM-6171-01 7 27135198 27135198 C T HOXA1 Missense_Mutation p.A112T 0.34 tolerated(0.4) benign(0.003) TCGA-CM-6171-01 7 35289694 35289694 C A TBX20 Missense_Mutation p.E83D 0.44 tolerated(0.17) benign(0.003) TCGA-CM-6171-01 7 36910050 36910050 G A ELMO1 Missense_Mutation p.T618M 0.43 tolerated(0.07) probably_damaging(0.994) TCGA-CM-6171-01 7 41739939 41739939 C T INHBA Missense_Mutation p.A12T 0.31 tolerated(0.23) benign(0.115) TCGA-CM-6171-01 7 43679004 43679004 C T COA1 3'UTR 0.23 TCGA-CM-6171-01 7 44425654 44425654 C T NUDCD3 Missense_Mutation p.D348N 0.41 deleterious(0.02) possibly_damaging(0.84) TCGA-CM-6171-01 7 45743331 45743331 G A ADCY1 Missense_Mutation p.A902T 0.36 deleterious(0) probably_damaging(0.996) TCGA-CM-6171-01 7 5396729 5396729 C T TNRC18 Missense_Mutation p.S1671N 0.42 benign(0.428) TCGA-CM-6171-01 7 5434175 5434175 G A TNRC18 Missense_Mutation p.S80L 0.37 benign(0.086) TCGA-CM-6171-01 7 64438973 64438973 T - ZNF117 Frame_Shift_Del p.I326Ffs*28 0.09 TCGA-CM-6171-01 7 70228160 70228160 G T AUTS2 Missense_Mutation p.Q349H 0.47 tolerated(0.38) benign(0.004) TCGA-CM-6171-01 7 71134987 71134987 G A WBSCR17 Missense_Mutation p.E433K 0.45 tolerated(0.07) benign(0.102) TCGA-CM-6171-01 7 73630393 73630393 C T LAT2 Missense_Mutation p.R30C 0.38 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 7 73731913 73731913 G - CLIP2 Frame_Shift_Del p.K15Sfs*73 0.36 TCGA-CM-6171-01 7 7412740 7412740 C A COL28A1 Missense_Mutation p.G933W 0.09 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 7 74191647 74191647 C T NCF1 Missense_Mutation p.S36L 0.09 deleterious(0.02) probably_damaging(0.979) TCGA-CM-6171-01 7 7493094 7493094 C A COL28A1 Nonsense_Mutation p.G473* 0.37 TCGA-CM-6171-01 7 75051188 75051188 C T POM121C Missense_Mutation p.A783T 0.41 tolerated(1) benign(0.011) TCGA-CM-6171-01 7 75401461 75401461 G T CCL26 Missense_Mutation p.L12M 0.44 deleterious(0) possibly_damaging(0.665) TCGA-CM-6171-01 7 75441261 75441261 C A CCL24 Missense_Mutation p.Q71H 0.40 tolerated(0.44) benign(0.015) TCGA-CM-6171-01 7 76610352 76610355 AGCA CAGCCC UPK3B Intron 0.26 TCGA-CM-6171-01 7 76825813 76825813 G T FGL2 Missense_Mutation p.S368Y 0.47 deleterious(0.02) possibly_damaging(0.451) TCGA-CM-6171-01 7 76941253 76941253 C T GSAP Missense_Mutation p.R793Q 0.47 tolerated(0.62) benign(0.011) TCGA-CM-6171-01 7 77402579 77402579 C T RSBN1L Nonsense_Mutation p.R581* 0.17 TCGA-CM-6171-01 7 82585002 82585002 C A PCLO Missense_Mutation p.R1756L 0.39 unknown(0) TCGA-CM-6171-01 7 82785071 82785071 G T PCLO Missense_Mutation p.P296T 0.36 unknown(0) TCGA-CM-6171-01 7 86416219 86416219 C T GRM3 Missense_Mutation p.R371C 0.45 tolerated(0.09) possibly_damaging(0.67) TCGA-CM-6171-01 7 87179545 87179545 C T ABCB1 Missense_Mutation p.C431Y 0.41 deleterious(0) probably_damaging(0.982) TCGA-CM-6171-01 7 92157713 92157713 C A PEX1 Missense_Mutation p.G13C 0.55 deleterious(0.01) possibly_damaging(0.681) TCGA-CM-6171-01 7 96639227 96639227 G A DLX6 Silent p.A250A 0.38 TCGA-CM-6171-01 7 98546270 98546270 G A TRRAP Missense_Mutation p.A1577T 0.41 benign(0.001) TCGA-CM-6171-01 7 99084989 99084989 C T ZNF789 Nonsense_Mutation p.R386* 0.37 TCGA-CM-6171-01 7 99272209 99272209 C A CYP3A5 Splice_Site p.X56_splice 0.12 TCGA-CM-6171-01 7 99703111 99703111 C T AP4M1 Missense_Mutation p.P293L 0.51 tolerated(0.13) benign(0.125) TCGA-CM-6171-01 8 101961004 101961004 A G YWHAZ Silent p.N38N 0.45 TCGA-CM-6171-01 8 103662455 103662455 G A KLF10 Missense_Mutation p.R450C 0.43 deleterious(0.03) possibly_damaging(0.651) TCGA-CM-6171-01 8 104513174 104513174 G A RIMS2 Silent p.P20P 0.49 TCGA-CM-6171-01 8 10468643 10468643 C A RP1L1 Missense_Mutation p.G989C 0.49 possibly_damaging(0.821) TCGA-CM-6171-01 8 105360960 105360960 G A DCSTAMP Silent p.A60A 0.10 TCGA-CM-6171-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.35 TCGA-CM-6171-01 8 106331157 106331157 A C ZFPM2 5'UTR 0.36 TCGA-CM-6171-01 8 107752661 107752661 T G OXR1 Missense_Mutation p.Y753D 0.43 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 8 110457397 110457397 A C PKHD1L1 Missense_Mutation p.I1767L 0.39 tolerated(0.05) benign(0.206) TCGA-CM-6171-01 8 11058360 11058360 C T XKR6 Silent p.G163G 0.35 TCGA-CM-6171-01 8 110984849 110984849 C T KCNV1 Missense_Mutation p.R210H 0.41 deleterious(0) possibly_damaging(0.849) TCGA-CM-6171-01 8 110986291 110986291 C T KCNV1 Silent p.A109A 0.41 TCGA-CM-6171-01 8 117954927 117954927 C T AARD Missense_Mutation p.A152V 0.19 tolerated(1) benign(0.001) TCGA-CM-6171-01 8 118533219 118533219 G A MED30 Missense_Mutation p.R35H 0.44 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 8 12878674 12878674 G A KIAA1456 Silent p.R162R 0.36 TCGA-CM-6171-01 8 134232957 134232957 C - WISP1 Frame_Shift_Del p.P163Rfs*11 0.33 TCGA-CM-6171-01 8 13424903 13424903 C T C8orf48 Missense_Mutation p.R135C 0.44 tolerated(0.18) benign(0.002) TCGA-CM-6171-01 8 141745383 141745383 C T PTK2 Missense_Mutation p.R666Q 0.35 deleterious(0) probably_damaging(0.989) TCGA-CM-6171-01 8 142228884 142228884 G A SLC45A4 Silent p.D234D 0.44 TCGA-CM-6171-01 8 144460974 144460974 G A RHPN1 Missense_Mutation p.G190R 0.41 deleterious(0.02) benign(0.051) TCGA-CM-6171-01 8 144803823 144803823 C - MAPK15 Frame_Shift_Del p.L439* 0.33 TCGA-CM-6171-01 8 144996752 144996752 G A PLEC Missense_Mutation p.R2586W 0.46 probably_damaging(0.987) TCGA-CM-6171-01 8 145007153 145007153 G A PLEC Silent p.P652P 0.47 TCGA-CM-6171-01 8 145150876 145150876 C - CYC1 Frame_Shift_Del p.S93Afs*161 0.41 TCGA-CM-6171-01 8 145640465 145640465 C - SLC39A4 Frame_Shift_Del p.V233Wfs*39 0.33 TCGA-CM-6171-01 8 145724317 145724317 C T PPP1R16A Nonsense_Mutation p.R117* 0.58 TCGA-CM-6171-01 8 145739892 145739892 C T RECQL4 Silent p.P546P 0.38 TCGA-CM-6171-01 8 146107224 146107224 A G ZNF250 Silent p.C453C 0.33 TCGA-CM-6171-01 8 17102665 17102665 G A CNOT7 5'UTR 0.43 TCGA-CM-6171-01 8 19221752 19221752 T C SH2D4A Silent p.P292P 0.33 TCGA-CM-6171-01 8 19797008 19797008 C T LPL Silent p.T19T 0.44 TCGA-CM-6171-01 8 20036931 20036931 G A SLC18A1 Silent p.L63L 0.49 TCGA-CM-6171-01 8 21959714 21959714 C T FAM160B2 Missense_Mutation p.S627L 0.45 deleterious(0) probably_damaging(0.963) TCGA-CM-6171-01 8 21999036 21999036 G A REEP4 5'UTR 0.46 TCGA-CM-6171-01 8 22079254 22079254 C T PHYHIP Missense_Mutation p.G202D 0.36 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 8 22452212 22452212 G A PDLIM2 3'Flank 0.40 TCGA-CM-6171-01 8 23428886 23428886 C T SLC25A37 Missense_Mutation p.R179W 0.46 deleterious(0) possibly_damaging(0.766) TCGA-CM-6171-01 8 23560228 23560228 C T NKX2-6 Silent p.V214V 0.43 TCGA-CM-6171-01 8 24813333 24813333 C T CTD-2168K21.2 5'Flank 0.09 TCGA-CM-6171-01 8 25232108 25232108 C T DOCK5 Nonsense_Mutation p.R1252* 0.30 TCGA-CM-6171-01 8 27145113 27145113 C T TRIM35 Missense_Mutation p.R479H 0.18 deleterious(0.04) possibly_damaging(0.9) TCGA-CM-6171-01 8 27516690 27516690 G A SCARA3 Missense_Mutation p.A335T 0.41 tolerated(0.54) benign(0.09) TCGA-CM-6171-01 8 35608159 35608159 G A UNC5D Silent p.A665A 0.37 TCGA-CM-6171-01 8 37693078 37693078 G A GPR124 Missense_Mutation p.V614M 0.41 deleterious(0) possibly_damaging(0.739) TCGA-CM-6171-01 8 38271232 38271232 C T FGFR1 Missense_Mutation p.V826I 0.49 deleterious(0) possibly_damaging(0.555) TCGA-CM-6171-01 8 38644972 38644972 A G TACC1 5'UTR 0.33 TCGA-CM-6171-01 8 38677261 38677261 G A TACC1 Missense_Mutation p.G167R 0.40 deleterious(0.02) benign(0.021) TCGA-CM-6171-01 8 39782863 39782863 C T IDO1 Silent p.L277L 0.43 TCGA-CM-6171-01 8 41581148 41581148 C T ANK1 Missense_Mutation p.G272S 0.35 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 8 41798487 41798487 C T KAT6A Missense_Mutation p.R971H 0.39 benign(0.027) TCGA-CM-6171-01 8 42302207 42302207 A - SLC20A2 Frame_Shift_Del p.F229Lfs*14 0.29 TCGA-CM-6171-01 8 42552603 42552603 T C CHRNB3 5'UTR 0.42 TCGA-CM-6171-01 8 48690331 48690331 G A PRKDC Silent p.H3985H 0.34 TCGA-CM-6171-01 8 52322050 52322050 G A PXDNL Missense_Mutation p.R712C 0.12 deleterious(0) possibly_damaging(0.586) TCGA-CM-6171-01 8 53084504 53084504 A G ST18 Missense_Mutation p.L306P 0.38 deleterious(0) benign(0.242) TCGA-CM-6171-01 8 55370918 55370918 G A SOX17 Missense_Mutation p.A74T 0.32 deleterious(0) probably_damaging(0.989) TCGA-CM-6171-01 8 55538813 55538813 A - RP1 Frame_Shift_Del p.R793Efs*55 0.31 TCGA-CM-6171-01 8 6366291 6366291 A - ANGPT2 Intron 0.24 TCGA-CM-6171-01 8 65494144 65494144 G A BHLHE22 Missense_Mutation p.R266H 0.59 deleterious(0) possibly_damaging(0.687) TCGA-CM-6171-01 8 68992721 68992721 T - PREX2 Frame_Shift_Del p.S565Rfs*10 0.29 TCGA-CM-6171-01 8 7673236 7673236 T - DEFB107A 5'UTR 0.18 TCGA-CM-6171-01 8 77895826 77895826 A G PEX2 Missense_Mutation p.W197R 0.33 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 8 85441774 85441774 C T RALYL Missense_Mutation p.A86V 0.45 tolerated(0.12) benign(0.158) TCGA-CM-6171-01 8 87126109 87126109 C T ATP6V0D2 Missense_Mutation p.T101M 0.34 deleterious(0.01) probably_damaging(0.909) TCGA-CM-6171-01 8 88885403 88885403 C T DCAF4L2 Missense_Mutation p.C266Y 0.46 tolerated(0.38) benign(0.296) TCGA-CM-6171-01 8 88886047 88886047 T C DCAF4L2 Silent p.V51V 0.06 TCGA-CM-6171-01 8 89339485 89339485 C A MMP16 5'UTR 0.31 TCGA-CM-6171-01 8 97258106 97258106 G A MTERFD1 Silent p.P293P 0.35 TCGA-CM-6171-01 9 100128862 100128862 C T CCDC180 Missense_Mutation p.R1401C 0.44 deleterious(0) possibly_damaging(0.835) TCGA-CM-6171-01 9 100245510 100245510 C A TDRD7 Missense_Mutation p.P931H 0.46 deleterious(0) probably_damaging(0.914) TCGA-CM-6171-01 9 107361266 107367480 9:107361266-107367480 - OR13C5 large deletion 0.29 TCGA-CM-6171-01 9 107367480 107367480 G - OR13C2 Frame_Shift_Del p.M144Wfs*8 0.08 TCGA-CM-6171-01 9 109686568 109686568 A G ZNF462 Silent p.E125E 0.43 TCGA-CM-6171-01 9 109701238 109701238 A G ZNF462 Missense_Mutation p.M2093V 0.45 benign(0.147) TCGA-CM-6171-01 9 110249327 110249327 G A KLF4 Missense_Mutation p.H416Y 0.39 deleterious(0) possibly_damaging(0.888) TCGA-CM-6171-01 9 112141880 112141880 G A PTPN3 Missense_Mutation p.R900C 0.16 deleterious(0) probably_damaging(0.976) TCGA-CM-6171-01 9 113704153 113704153 C T LPAR1 Missense_Mutation p.R114Q 0.41 tolerated(0.29) benign(0.015) TCGA-CM-6171-01 9 114366154 114366154 G A PTGR1 5'Flank 0.42 TCGA-CM-6171-01 9 116778982 116778982 C T ZNF618 Silent p.G242G 0.45 TCGA-CM-6171-01 9 124966961 124966961 G A LHX6 3'UTR 0.40 TCGA-CM-6171-01 9 125140782 125140782 C T PTGS1 Silent p.H94H 0.45 TCGA-CM-6171-01 9 125621080 125621080 T C RC3H2 Silent p.L717L 0.40 TCGA-CM-6171-01 9 125797428 125797428 A G GPR21 Missense_Mutation p.I195V 0.41 tolerated(0.26) benign(0.291) TCGA-CM-6171-01 9 126129552 126129552 G - CRB2 Frame_Shift_Del p.G287Vfs*157 0.33 TCGA-CM-6171-01 9 12698633 12698633 T C TYRP1 Silent p.D297D 0.43 TCGA-CM-6171-01 9 128001286 128001286 C T HSPA5 Silent p.E310E 0.41 TCGA-CM-6171-01 9 130479926 130479926 C T TTC16 Missense_Mutation p.R101W 0.36 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 9 130588859 130588859 A G ENG Silent p.A151A 0.48 TCGA-CM-6171-01 9 130684316 130684316 A G PIP5KL1 Missense_Mutation p.L332P 0.17 deleterious(0.04) benign(0.199) TCGA-CM-6171-01 9 130925726 130925726 C T C9orf16 Silent p.Y28Y 0.43 TCGA-CM-6171-01 9 131094519 131094519 G A COQ4 Missense_Mutation p.D164N 0.32 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 9 131597818 131597818 G A CCBL1 Silent p.G328G 0.44 TCGA-CM-6171-01 9 13183488 13183488 A G MPDZ Silent p.L860L 0.43 TCGA-CM-6171-01 9 132482936 132482936 G A PRRX2 Missense_Mutation p.R170H 0.38 deleterious(0.05) probably_damaging(0.975) TCGA-CM-6171-01 9 133506012 133506012 C T FUBP3 Intron 0.36 TCGA-CM-6171-01 9 133760783 133760783 A G ABL1 Missense_Mutation p.T1055A 0.44 tolerated_low_confidence(0.69) benign(0.012) TCGA-CM-6171-01 9 134077057 134077057 T C NUP214 Missense_Mutation p.S1849P 0.13 benign(0.077) TCGA-CM-6171-01 9 135464627 135464627 G C BARHL1 Missense_Mutation p.K234N 0.39 deleterious(0) probably_damaging(0.959) TCGA-CM-6171-01 9 135942539 135942539 C T CEL Missense_Mutation p.T284I 0.15 tolerated(0.05) possibly_damaging(0.9) TCGA-CM-6171-01 9 136131529 136131529 C T RP11-430N14.4 5'Flank 0.48 TCGA-CM-6171-01 9 136217511 136217511 G T RPL7A Missense_Mutation p.K185N 0.49 deleterious(0.01) possibly_damaging(0.573) TCGA-CM-6171-01 9 137300015 137300015 C T RXRA Silent p.P100P 0.47 TCGA-CM-6171-01 9 139259009 139259009 G A CARD9 Silent p.D479D 0.62 TCGA-CM-6171-01 9 139746895 139746895 C T MAMDC4 Silent p.P9P 0.48 TCGA-CM-6171-01 9 140175016 140175016 C - TOR4A 3'UTR 0.27 TCGA-CM-6171-01 9 14792764 14792764 G T FREM1 Missense_Mutation p.Q1320K 0.45 tolerated(0.56) benign(0.002) TCGA-CM-6171-01 9 15623341 15623341 T - CCDC171 Frame_Shift_Del p.L252Yfs*27 0.31 TCGA-CM-6171-01 9 26947070 26947070 C T IFT74 5'Flank 0.48 TCGA-CM-6171-01 9 26995408 26995408 C T LRRC19 3'UTR 0.26 TCGA-CM-6171-01 9 27192621 27192621 G A TEK Missense_Mutation p.G542R 0.43 tolerated(0.4) benign(0.285) TCGA-CM-6171-01 9 289509 289509 G T DOCK8 Splice_Site p.X111_splice 0.39 TCGA-CM-6171-01 9 32488079 32488079 G A DDX58 Missense_Mutation p.T359M 0.36 deleterious(0.03) possibly_damaging(0.782) TCGA-CM-6171-01 9 33469328 33469328 G A NOL6 Missense_Mutation p.R247C 0.39 deleterious(0) possibly_damaging(0.534) TCGA-CM-6171-01 9 34256496 34256496 G A KIF24 Nonsense_Mutation p.Q1037* 0.44 TCGA-CM-6171-01 9 34648332 34648332 T C GALT Missense_Mutation p.V189A 0.36 deleterious(0) possibly_damaging(0.731) TCGA-CM-6171-01 9 34996664 34996664 G A DNAJB5 Missense_Mutation p.R319H 0.33 tolerated(0.06) benign(0.012) TCGA-CM-6171-01 9 35092041 35092041 G A PIGO Missense_Mutation p.R615W 0.40 deleterious(0.02) probably_damaging(0.955) TCGA-CM-6171-01 9 35105325 35105325 G A FAM214B Missense_Mutation p.R504C 0.49 deleterious(0) benign(0.039) TCGA-CM-6171-01 9 35236479 35236479 C T UNC13B Silent p.L56L 0.46 TCGA-CM-6171-01 9 35732627 35732627 A G CREB3 5'UTR 0.30 TCGA-CM-6171-01 9 35801094 35801094 C T NPR2 Missense_Mutation p.A460V 0.38 tolerated(0.12) benign(0.105) TCGA-CM-6171-01 9 35810948 35810948 G T SPAG8 Missense_Mutation p.P324H 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-CM-6171-01 9 37521617 37521617 G A FBXO10 Missense_Mutation p.R717W 0.46 deleterious(0.01) possibly_damaging(0.851) TCGA-CM-6171-01 9 43685333 43685333 G T CNTNAP3B Silent p.L13L 0.20 TCGA-CM-6171-01 9 5054866 5054866 T C JAK2 Silent p.S306S 0.32 TCGA-CM-6171-01 9 5185347 5185347 C T INSL6 Missense_Mutation p.A86T 0.41 tolerated(1) benign(0) TCGA-CM-6171-01 9 5810077 5810077 C T ERMP1 Silent p.L494L 0.42 TCGA-CM-6171-01 9 6014238 6014238 G A RANBP6 Missense_Mutation p.T457I 0.44 tolerated(0.32) benign(0.015) TCGA-CM-6171-01 9 71863270 71863271 TC - TJP2 Intron 0.31 TCGA-CM-6171-01 9 77300648 77300648 C G RORB 3'UTR 0.44 TCGA-CM-6171-01 9 79922910 79922910 G A VPS13A Missense_Mutation p.G1337D 0.40 tolerated(0.07) benign(0.129) TCGA-CM-6171-01 9 80851399 80851399 T C CEP78 Missense_Mutation p.F45L 0.47 tolerated(0.51) probably_damaging(0.979) TCGA-CM-6171-01 9 84248946 84248946 A G TLE1 Intron 0.42 TCGA-CM-6171-01 9 85620335 85620335 G T RASEF Missense_Mutation p.S370Y 0.31 tolerated(0.13) possibly_damaging(0.8) TCGA-CM-6171-01 9 86284098 86284098 A G UBQLN1 Splice_Site p.X416_splice 0.41 TCGA-CM-6171-01 9 91607004 91607004 G A C9orf47 3'UTR 0.38 TCGA-CM-6171-01 9 93375385 93375385 G A DIRAS2 3'UTR 0.43 TCGA-CM-6171-01 9 96070770 96070770 G A WNK2 Silent p.A2177A 0.12 TCGA-CM-6171-01 X 10090698 10090698 G A WWC3 Missense_Mutation p.R557K 0.38 tolerated(0.06) possibly_damaging(0.72) TCGA-CM-6171-01 X 103268258 103268258 C A H2BFWT 5'UTR 0.44 TCGA-CM-6171-01 X 103499199 103499199 G A ESX1 Missense_Mutation p.R48W 0.44 deleterious_low_confidence(0.03) benign(0.428) TCGA-CM-6171-01 X 105150564 105150564 A - NRK Frame_Shift_Del p.R337Dfs*9 0.32 TCGA-CM-6171-01 X 105197157 105197157 G A NRK Missense_Mutation p.G1550S 0.45 deleterious(0.01) probably_damaging(0.938) TCGA-CM-6171-01 X 107334793 107334793 C A PSMD10 5'UTR 0.43 TCGA-CM-6171-01 X 107868948 107868948 C T COL4A5 Silent p.N1010N 0.41 TCGA-CM-6171-01 X 107976577 107976577 G T IRS4 Missense_Mutation p.L1000I 0.39 deleterious(0.02) unknown(0) TCGA-CM-6171-01 X 109694397 109694397 T C RGAG1 Silent p.T184T 0.37 TCGA-CM-6171-01 X 110987993 110987993 A T ALG13 Silent p.P931P 0.10 TCGA-CM-6171-01 X 111020092 111020092 G A TRPC5 Missense_Mutation p.R791W 0.43 deleterious(0) possibly_damaging(0.462) TCGA-CM-6171-01 X 112023978 112023978 A - AMOT Intron 0.41 TCGA-CM-6171-01 X 114141417 114141417 C T HTR2C Silent p.A272A 0.42 TCGA-CM-6171-01 X 114141874 114141874 G A HTR2C Missense_Mutation p.E425K 0.41 tolerated_low_confidence(1) benign(0) TCGA-CM-6171-01 X 118605104 118605104 C T SLC25A5 3'UTR 0.25 TCGA-CM-6171-01 X 122765639 122765639 A G THOC2 Missense_Mutation p.I794T 0.38 tolerated(0.19) benign(0.001) TCGA-CM-6171-01 X 125955528 125955528 G A CXorf64 3'UTR 0.34 TCGA-CM-6171-01 X 128880303 128880303 G A XPNPEP2 Silent p.E130E 0.63 TCGA-CM-6171-01 X 1321371 1321371 C T CRLF2 Silent p.S128S 0.39 TCGA-CM-6171-01 X 133379355 133379355 T C CCDC160 Silent p.L175L 0.16 TCGA-CM-6171-01 X 134990738 134990738 C A SAGE1 Missense_Mutation p.A468E 0.39 deleterious(0.02) benign(0.068) TCGA-CM-6171-01 X 135047099 135047100 - G MMGT1 3'UTR 0.31 TCGA-CM-6171-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.09 TCGA-CM-6171-01 X 136112398 136112398 G A GPR101 Missense_Mutation p.P479L 0.40 tolerated(0.08) benign(0.003) TCGA-CM-6171-01 X 142968317 142968317 G T UBE2NL 3'UTR 0.40 TCGA-CM-6171-01 X 144905053 144905053 G A SLITRK2 Silent p.L370L 0.35 TCGA-CM-6171-01 X 149014508 149014508 T G MAGEA8 3'UTR 0.40 TCGA-CM-6171-01 X 150780204 150780204 T A PASD1 Silent p.S62S 0.38 TCGA-CM-6171-01 X 150840156 150840156 C T PASD1 Missense_Mutation p.H448Y 0.37 tolerated(0.77) benign(0.005) TCGA-CM-6171-01 X 151092757 151092757 G T MAGEA4 Silent p.L207L 0.34 TCGA-CM-6171-01 X 151093626 151093626 A T MAGEA4 3'UTR 0.29 TCGA-CM-6171-01 X 1522263 1522263 C T ASMTL Missense_Mutation p.E589K 0.33 deleterious(0.01) probably_damaging(0.946) TCGA-CM-6171-01 X 152773921 152773921 G A BGN 3'UTR 0.44 TCGA-CM-6171-01 X 152825299 152825299 C T ATP2B3 Missense_Mutation p.P913L 0.43 deleterious(0.02) probably_damaging(0.916) TCGA-CM-6171-01 X 152939628 152939628 C T PNCK Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) benign(0.043) TCGA-CM-6171-01 X 153221760 153221760 A - HCFC1 Frame_Shift_Del p.L913Wfs*11 0.38 TCGA-CM-6171-01 X 153461463 153461463 G A OPN1MW Missense_Mutation p.D343N 0.17 deleterious(0.01) probably_damaging(0.988) TCGA-CM-6171-01 X 153993212 153993212 C T DKC1 Missense_Mutation p.R19W 0.41 deleterious_low_confidence(0) benign(0.333) TCGA-CM-6171-01 X 154490274 154490274 C T RAB39B Silent p.T152T 0.35 TCGA-CM-6171-01 X 154563930 154563930 G A CLIC2 5'UTR 0.47 TCGA-CM-6171-01 X 155010480 155010481 - A SPRY3 3'UTR 0.24 TCGA-CM-6171-01 X 15603683 15603683 C - ACE2 Frame_Shift_Del p.G272Vfs*10 0.30 TCGA-CM-6171-01 X 15683079 15683079 C A TMEM27 5'UTR 0.27 TCGA-CM-6171-01 X 16870948 16870948 G A RBBP7 Missense_Mutation p.A314V 0.40 deleterious(0) probably_damaging(0.988) TCGA-CM-6171-01 X 17745633 17745633 C T NHS Missense_Mutation p.T1115M 0.34 deleterious(0.05) benign(0.241) TCGA-CM-6171-01 X 18944606 18944606 G A PHKA2 Missense_Mutation p.P475L 0.46 deleterious(0) probably_damaging(0.991) TCGA-CM-6171-01 X 215774 215774 C T PLCXD1 Silent p.F248F 0.47 TCGA-CM-6171-01 X 21675634 21675634 C T KLHL34 Nonsense_Mutation p.W91* 0.32 TCGA-CM-6171-01 X 23020081 23020081 C A DDX53 3'UTR 0.46 TCGA-CM-6171-01 X 2408656 2408656 G A ZBED1 Silent p.A35A 0.43 TCGA-CM-6171-01 X 30237219 30237219 C T MAGEB2 Silent p.N174N 0.38 TCGA-CM-6171-01 X 3229371 3229371 C T MXRA5 Silent p.S2291S 0.43 TCGA-CM-6171-01 X 3241559 3241559 A G MXRA5 Missense_Mutation p.F723L 0.40 tolerated(0.75) benign(0.001) TCGA-CM-6171-01 X 38020284 38020284 G - SRPX Frame_Shift_Del p.P226Qfs*32 0.28 TCGA-CM-6171-01 X 39934301 39934302 TC - BCOR Frame_Shift_Del p.K100Rfs*85 0.31 TCGA-CM-6171-01 X 41333644 41333644 G A NYX Missense_Mutation p.R313H 0.19 tolerated(0.24) benign(0.001) TCGA-CM-6171-01 X 41604817 41604817 G A CASK Nonsense_Mutation p.R106* 0.44 TCGA-CM-6171-01 X 47429012 47429012 G A ARAF Missense_Mutation p.G459R 0.46 deleterious(0) probably_damaging(0.999) TCGA-CM-6171-01 X 48214641 48214641 G A SSX3 Missense_Mutation p.A15V 0.35 deleterious(0.01) benign(0.309) TCGA-CM-6171-01 X 48755633 48755633 C T PQBP1 5'UTR 0.34 TCGA-CM-6171-01 X 48832467 48832467 G A GRIPAP1 Silent p.S747S 0.38 TCGA-CM-6171-01 X 48924815 48924815 C T CCDC120 Missense_Mutation p.R354C 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6171-01 X 48925609 48925609 G A CCDC120 Silent p.A618A 0.35 TCGA-CM-6171-01 X 48929638 48929638 G A PRAF2 Missense_Mutation p.R143C 0.40 deleterious(0) possibly_damaging(0.887) TCGA-CM-6171-01 X 49646961 49646961 A G USP27X 3'UTR 0.35 TCGA-CM-6171-01 X 50121645 50121645 C A DGKK RNA 0.34 TCGA-CM-6171-01 X 51150656 51150656 C T CXorf67 Missense_Mutation p.A263V 0.15 tolerated(0.09) probably_damaging(0.987) TCGA-CM-6171-01 X 53239623 53239623 G T KDM5C Silent p.P573P 0.41 TCGA-CM-6171-01 X 53263449 53263449 G - IQSEC2 Frame_Shift_Del p.S1474Vfs*21 0.38 TCGA-CM-6171-01 X 53574940 53574940 G A HUWE1 Missense_Mutation p.R3444C 0.40 possibly_damaging(0.689) TCGA-CM-6171-01 X 53969775 53969775 T C PHF8 Intron 0.38 TCGA-CM-6171-01 X 56591152 56591152 C T UBQLN2 Silent p.A282A 0.41 TCGA-CM-6171-01 X 66765529 66765529 C A AR Missense_Mutation p.L181I 0.48 tolerated_low_confidence(0.11) possibly_damaging(0.892) TCGA-CM-6171-01 X 69263353 69263353 G T AWAT2 Missense_Mutation p.F149L 0.38 tolerated(0.81) benign(0.023) TCGA-CM-6171-01 X 70793769 70793769 G A OGT 3'UTR 0.39 TCGA-CM-6171-01 X 70823471 70823471 C T ACRC Missense_Mutation p.A115V 0.44 possibly_damaging(0.739) TCGA-CM-6171-01 X 71458822 71458822 G A ERCC6L 5'UTR 0.65 TCGA-CM-6171-01 X 72433381 72433381 A T NAP1L2 Missense_Mutation p.D316E 0.45 tolerated(0.13) possibly_damaging(0.861) TCGA-CM-6171-01 X 76931744 76931744 A G ATRX Silent p.D1262D 0.34 TCGA-CM-6171-01 X 7811739 7811739 C T VCX Silent p.H101H 0.21 TCGA-CM-6171-01 X 80369929 80369929 T - HMGN5 3'UTR 0.26 TCGA-CM-6171-01 X 8138190 8138190 G A VCX2 Silent p.H101H 0.43 TCGA-CM-6171-01 X 84563165 84563165 G A POF1B Missense_Mutation p.R339W 0.38 deleterious(0) probably_damaging(1) TCGA-CM-6171-01 X 96139371 96139371 G A RPA4 Missense_Mutation p.G21D 0.38 tolerated(0.08) benign(0.002) TCGA-CM-6171-01 X 9863021 9863021 G A SHROOM2 Missense_Mutation p.R358H 0.40 tolerated(0.26) possibly_damaging(0.908) TCGA-CM-6172-01 10 113915837 113915837 A G GPAM Intron 0.09 TCGA-CM-6172-01 10 135347295 135347295 C T CYP2E1 Silent p.D287D 0.39 TCGA-CM-6172-01 10 81316987 81316987 C T SFTPA2 Missense_Mutation p.R242Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-CM-6172-01 10 94774 94774 G A TUBB8 Missense_Mutation p.R46C 0.33 deleterious_low_confidence(0.01) benign(0.249) TCGA-CM-6172-01 11 12315789 12315789 C T MICALCL Missense_Mutation p.R271W 0.29 deleterious(0.03) benign(0.117) TCGA-CM-6172-01 11 33640183 33640183 G A KIAA1549L Missense_Mutation p.R1498H 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-CM-6172-01 11 5411390 5411390 C T OR51M1 Silent p.T254T 0.33 TCGA-CM-6172-01 11 59423453 59423453 T C PATL1 Silent p.R263R 0.37 TCGA-CM-6172-01 11 6477845 6477845 C T TRIM3 Missense_Mutation p.G371S 0.28 deleterious(0.03) possibly_damaging(0.615) TCGA-CM-6172-01 11 6567756 6567756 C T DNHD1 Missense_Mutation p.R1863C 0.29 benign(0.011) TCGA-CM-6172-01 11 66473257 66473257 G A SPTBN2 Silent p.L569L 0.37 TCGA-CM-6172-01 12 6859900 6859900 C T MLF2 Missense_Mutation p.M83I 0.26 tolerated(0.07) probably_damaging(0.953) TCGA-CM-6172-01 13 101316543 101316543 G A TMTC4 Silent p.F89F 0.22 TCGA-CM-6172-01 13 23808790 23808790 G A SGCG Missense_Mutation p.R79H 0.20 tolerated(0.12) benign(0.045) TCGA-CM-6172-01 13 67801927 67801927 C T PCDH9 Missense_Mutation p.D216N 0.25 deleterious(0) probably_damaging(1) TCGA-CM-6172-01 13 98043601 98043601 C T MBNL2 3'UTR 0.55 TCGA-CM-6172-01 14 70634425 70634425 A C SLC8A3 Missense_Mutation p.F239V 0.09 tolerated(0.26) benign(0.002) TCGA-CM-6172-01 14 88654446 88654446 G A KCNK10 Silent p.N292N 0.41 TCGA-CM-6172-01 14 93693464 93693464 G A UBR7 3'UTR 0.29 TCGA-CM-6172-01 15 45660329 45660329 T C GATM Missense_Mutation p.H205R 0.29 tolerated(1) benign(0) TCGA-CM-6172-01 15 78526716 78526716 G T ACSBG1 Missense_Mutation p.T43N 0.34 tolerated(0.22) benign(0.101) TCGA-CM-6172-01 15 93515498 93515498 C T CHD2 Missense_Mutation p.L786F 0.30 deleterious(0.04) possibly_damaging(0.747) TCGA-CM-6172-01 16 20376794 20376794 C T PDILT Silent p.K395K 0.32 TCGA-CM-6172-01 16 20386198 20386198 G T PDILT Silent p.G209G 0.28 TCGA-CM-6172-01 16 22826184 22826184 G A HS3ST2 Missense_Mutation p.A85T 0.44 tolerated(0.18) benign(0.002) TCGA-CM-6172-01 16 55719184 55719184 A G SLC6A2 Silent p.T258T 0.23 TCGA-CM-6172-01 16 57147256 57147256 C T CPNE2 Silent p.F79F 0.49 TCGA-CM-6172-01 16 57159805 57159805 C T CPNE2 Missense_Mutation p.P321S 0.27 deleterious(0) probably_damaging(0.932) TCGA-CM-6172-01 16 58549757 58549757 G T SETD6 Silent p.R30R 0.09 TCGA-CM-6172-01 16 61687806 61687806 T A CDH8 Silent p.P702P 0.08 TCGA-CM-6172-01 17 12044468 12044468 A C MAP2K4 Missense_Mutation p.H364P 0.47 deleterious(0) possibly_damaging(0.9) TCGA-CM-6172-01 17 18178242 18178242 C T TOP3A Silent p.S960S 0.64 TCGA-CM-6172-01 17 25932695 25932695 G A KSR1 Missense_Mutation p.R502H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CM-6172-01 17 3337009 3337009 G C OR1E2 Missense_Mutation p.L43V 0.08 deleterious(0.02) possibly_damaging(0.481) TCGA-CM-6172-01 17 39412567 39412567 G T KRTAP9-9 3'UTR 0.30 TCGA-CM-6172-01 17 40880960 40880960 C A EZH1 5'UTR 0.36 TCGA-CM-6172-01 17 40914461 40914461 C T RAMP2 Silent p.C84C 0.36 TCGA-CM-6172-01 17 48603347 48603347 G A MYCBPAP Missense_Mutation p.V673I 0.22 tolerated(0.28) benign(0.03) TCGA-CM-6172-01 17 49043731 49043731 A T SPAG9 Missense_Mutation p.S1290T 0.43 tolerated(0.75) benign(0.016) TCGA-CM-6172-01 17 68171502 68171502 C G KCNJ2 Missense_Mutation p.L108V 0.38 tolerated(0.23) benign(0.02) TCGA-CM-6172-01 17 71420083 71420083 C T SDK2 Missense_Mutation p.D578N 0.48 deleterious(0.01) probably_damaging(1) TCGA-CM-6172-01 17 73951754 73951754 C T ACOX1 Missense_Mutation p.V223I 0.33 tolerated(0.22) benign(0.048) TCGA-CM-6172-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.15 deleterious(0) probably_damaging(1) TCGA-CM-6172-01 17 7579389 7579389 G A TP53 Nonsense_Mutation p.Q100* 0.60 TCGA-CM-6172-01 17 76447554 76447554 C T DNAH17 Silent p.L3563L 0.40 TCGA-CM-6172-01 18 77170945 77170945 G A NFATC1 Missense_Mutation p.G211R 0.60 tolerated(0.4) possibly_damaging(0.854) TCGA-CM-6172-01 19 12461465 12461465 C A ZNF442 Nonsense_Mutation p.E312* 0.40 TCGA-CM-6172-01 19 21992431 21992431 T A ZNF43 Missense_Mutation p.Q136H 0.24 tolerated(0.13) probably_damaging(0.984) TCGA-CM-6172-01 19 36333351 36333351 G A NPHS1 Silent p.G812G 0.31 TCGA-CM-6172-01 19 4446363 4446363 C T UBXN6 Missense_Mutation p.R323Q 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-CM-6172-01 19 5210796 5210796 G A PTPRS Missense_Mutation p.A1752V 0.22 deleterious(0) benign(0.433) TCGA-CM-6172-01 19 57036306 57036306 T G ZNF471 Nonsense_Mutation p.Y290* 0.31 TCGA-CM-6172-01 19 7916350 7916350 C T EVI5L Missense_Mutation p.R262C 0.37 deleterious(0) probably_damaging(0.999) TCGA-CM-6172-01 19 8974004 8974004 A C MUC16 Missense_Mutation p.Y14223D 0.07 probably_damaging(0.988) TCGA-CM-6172-01 1 101004828 101004828 C T GPR88 Silent p.P102P 0.38 TCGA-CM-6172-01 1 101200219 101200219 G A VCAM1 Missense_Mutation p.A652T 0.33 tolerated(0.86) benign(0.074) TCGA-CM-6172-01 1 119427487 119427487 C T TBX15 Silent p.P453P 0.41 TCGA-CM-6172-01 1 13719044 13719044 T - PRAMEF17 3'UTR 0.12 TCGA-CM-6172-01 1 152282966 152282966 G T FLG Missense_Mutation p.Q1466K 0.38 benign(0.042) TCGA-CM-6172-01 1 154029302 154029302 G A NUP210L Missense_Mutation p.R1077W 0.23 deleterious(0) probably_damaging(0.955) TCGA-CM-6172-01 1 158592833 158592833 C A SPTA1 Missense_Mutation p.L2020F 0.33 deleterious(0) probably_damaging(0.984) TCGA-CM-6172-01 1 206224750 206224750 G A AVPR1B Missense_Mutation p.D104N 0.37 deleterious(0) probably_damaging(1) TCGA-CM-6172-01 1 237813319 237813319 T A RYR2 Missense_Mutation p.V2552E 0.36 probably_damaging(0.972) TCGA-CM-6172-01 1 249149797 249149797 A T ZNF692 Missense_Mutation p.W312R 0.17 tolerated(0.19) benign(0.235) TCGA-CM-6172-01 1 35851737 35851737 T G ZMYM4 Missense_Mutation p.S595A 0.57 deleterious(0.05) probably_damaging(0.954) TCGA-CM-6172-01 1 59247973 59247974 - T JUN Frame_Shift_Ins p.R257Kfs*53 0.21 TCGA-CM-6172-01 1 77528749 77528749 G A ST6GALNAC5 Missense_Mutation p.R290H 0.43 probably_damaging(0.975) TCGA-CM-6172-01 1 77558092 77558092 A C PIGK Silent p.T385T 0.05 TCGA-CM-6172-01 20 401527 401527 C G RBCK1 Missense_Mutation p.Q257E 0.21 tolerated(1) benign(0.019) TCGA-CM-6172-01 20 49221290 49221290 G A FAM65C Silent p.F322F 0.36 TCGA-CM-6172-01 21 44839300 44839300 G A SIK1 Missense_Mutation p.P393L 0.75 deleterious(0.01) probably_damaging(0.998) TCGA-CM-6172-01 22 22288566 22288566 A G PPM1F Missense_Mutation p.F130L 0.09 tolerated(0.12) benign(0.084) TCGA-CM-6172-01 22 30683542 30683542 G A GATSL3 Silent p.P64P 0.33 TCGA-CM-6172-01 22 39909836 39909836 G A MIEF1 Silent p.V300V 0.24 TCGA-CM-6172-01 2 100052380 100052380 G A REV1 Missense_Mutation p.P413S 0.35 tolerated(0.27) benign(0.003) TCGA-CM-6172-01 2 114195442 114195442 C T CBWD2 5'UTR 0.35 TCGA-CM-6172-01 2 168727218 168727222 TTTTC - B3GALT1 3'UTR 0.14 TCGA-CM-6172-01 2 173292498 173292498 C T ITGA6 5'Flank 0.45 TCGA-CM-6172-01 2 179647001 179647001 G A TTN Silent p.G1106G 0.37 TCGA-CM-6172-01 2 190571746 190571746 T A ANKAR Missense_Mutation p.W665R 0.07 deleterious(0.01) possibly_damaging(0.658) TCGA-CM-6172-01 2 210559009 210559009 G A MAP2 Silent p.P705P 0.05 TCGA-CM-6172-01 2 233348755 233348755 C T ECEL1 Missense_Mutation p.A455T 0.40 deleterious(0) probably_damaging(0.987) TCGA-CM-6172-01 2 241658514 241658514 T G KIF1A Missense_Mutation p.Y1708S 0.34 deleterious(0) probably_damaging(0.999) TCGA-CM-6172-01 2 27308128 27308128 C A EMILIN1 Silent p.V892V 0.32 TCGA-CM-6172-01 2 90121687 90121687 G T IGKV1D-17 Silent p.L10L 0.42 TCGA-CM-6172-01 3 102187864 102187864 G A ZPLD1 Missense_Mutation p.R289Q 0.35 tolerated(0.09) possibly_damaging(0.622) TCGA-CM-6172-01 3 112066434 112066434 T C CD200 Missense_Mutation p.F176L 0.06 tolerated(0.6) benign(0.001) TCGA-CM-6172-01 3 112997025 112997025 C T BOC Silent p.P541P 0.48 TCGA-CM-6172-01 3 25660293 25660293 T C TOP2B Silent p.Q1032Q 0.07 TCGA-CM-6172-01 3 44700503 44700503 G A ZNF35 Silent p.Q216Q 0.38 TCGA-CM-6172-01 3 45266704 45266704 T G TMEM158 Silent p.A272A 0.40 TCGA-CM-6172-01 3 69928292 69928292 G A MITF Missense_Mutation p.A38T 0.36 tolerated(0.82) benign(0.01) TCGA-CM-6172-01 4 15780168 15780168 C T CD38 Missense_Mutation p.P44L 0.35 tolerated(0.67) benign(0) TCGA-CM-6172-01 4 16597347 16597347 G A LDB2 Silent p.H129H 0.39 TCGA-CM-6172-01 4 289864 289864 C A ZNF732 Missense_Mutation p.L28F 0.31 deleterious(0) probably_damaging(0.992) TCGA-CM-6172-01 4 48036955 48036955 C G NIPAL1 Silent p.G173G 0.38 TCGA-CM-6172-01 4 53729461 53729461 C T RASL11B Nonsense_Mutation p.R57* 0.42 TCGA-CM-6172-01 4 87797522 87797522 G A RP11-397E7.2 RNA 0.29 TCGA-CM-6172-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.42 TCGA-CM-6172-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.36 TCGA-CM-6172-01 5 134303877 134303877 C T PCBD2 3'UTR 0.47 TCGA-CM-6172-01 5 140250553 140250553 G A PCDHA11 Missense_Mutation p.R622H 0.35 deleterious_low_confidence(0.02) benign(0.301) TCGA-CM-6172-01 5 140537631 140537631 G A PCDHB17 3'UTR 0.35 TCGA-CM-6172-01 5 140604493 140604493 C T PCDHB14 Silent p.S472S 0.32 TCGA-CM-6172-01 5 140762471 140762471 C T PCDHGA7 Missense_Mutation p.A2V 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.815) TCGA-CM-6172-01 5 147021308 147021308 C T JAKMIP2 Missense_Mutation p.R415H 0.41 deleterious(0.03) probably_damaging(0.989) TCGA-CM-6172-01 5 150925740 150925740 C T FAT2 Missense_Mutation p.V1650I 0.08 benign(0.024) TCGA-CM-6172-01 5 167627064 167627064 C T TENM2 Silent p.L1120L 0.37 TCGA-CM-6172-01 5 33938152 33938152 C T RXFP3 Missense_Mutation p.P436L 0.36 tolerated(0.06) possibly_damaging(0.712) TCGA-CM-6172-01 6 107390748 107390748 G A BEND3 Silent p.P549P 0.41 TCGA-CM-6172-01 6 132874611 132874611 G T TAAR8 Silent p.G260G 0.05 TCGA-CM-6172-01 6 28541366 28541366 G T SCAND3 Missense_Mutation p.A767D 0.04 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-CM-6172-01 6 32977333 32977333 C G HLA-DOA 5'UTR 0.39 TCGA-CM-6172-01 6 42175934 42175934 C T MRPS10 3'UTR 0.35 TCGA-CM-6172-01 6 42175936 42175936 A T MRPS10 3'UTR 0.35 TCGA-CM-6172-01 6 43226906 43226906 G A TTBK1 Missense_Mutation p.G383S 0.37 benign(0.046) TCGA-CM-6172-01 6 87725710 87725710 C T HTR1E Missense_Mutation p.R220W 0.38 deleterious(0) possibly_damaging(0.632) TCGA-CM-6172-01 7 20782527 20782527 C T ABCB5 Nonsense_Mutation p.R1018* 0.12 TCGA-CM-6172-01 7 30538504 30538504 G T GGCT Missense_Mutation p.A113E 0.34 tolerated(1) benign(0.013) TCGA-CM-6172-01 7 39379596 39379596 G A POU6F2 Silent p.T289T 0.36 TCGA-CM-6172-01 7 88423875 88423875 G T C7orf62 Missense_Mutation p.Q128K 0.30 tolerated(0.64) benign(0) TCGA-CM-6172-01 7 97841680 97841680 C T BHLHA15 Missense_Mutation p.T20I 0.35 tolerated_low_confidence(0.44) benign(0.168) TCGA-CM-6172-01 8 101243393 101243393 C T SPAG1 Missense_Mutation p.T622I 0.34 tolerated(0.27) benign(0.007) TCGA-CM-6172-01 8 145580083 145580083 A G FBXL6 Missense_Mutation p.C368R 0.11 tolerated(0.27) benign(0.367) TCGA-CM-6172-01 8 27528520 27528520 C T SCARA3 Silent p.P491P 0.60 TCGA-CM-6172-01 8 2813209 2813209 A C CSMD1 Missense_Mutation p.V3299G 0.31 probably_damaging(0.92) TCGA-CM-6172-01 8 88886128 88886128 A T DCAF4L2 Missense_Mutation p.N24K 0.07 deleterious(0.01) possibly_damaging(0.611) TCGA-CM-6172-01 8 92307793 92307793 C T SLC26A7 Silent p.N113N 0.09 TCGA-CM-6172-01 9 101832050 101832050 C T COL15A1 Missense_Mutation p.T1350M 0.34 tolerated(0.37) probably_damaging(0.994) TCGA-CM-6172-01 9 118950309 118950309 C T PAPPA Missense_Mutation p.T431M 0.36 deleterious(0) benign(0.161) TCGA-CM-6172-01 9 124044194 124044194 G A GSN-AS1 RNA 0.33 TCGA-CM-6172-01 9 127089657 127089657 C T NEK6 Silent p.V219V 0.30 TCGA-CM-6172-01 9 132740860 132740860 G A FNBP1 Silent p.L77L 0.32 TCGA-CM-6172-01 9 135140223 135140227 TATGG - SETX Frame_Shift_Del p.T2478Sfs*35 0.37 TCGA-CM-6172-01 9 136899876 136899876 C T BRD3 Missense_Mutation p.R671H 0.09 deleterious(0) probably_damaging(0.976) TCGA-CM-6172-01 9 138714882 138714882 A C CAMSAP1 Missense_Mutation p.L542R 0.06 deleterious(0) probably_damaging(0.995) TCGA-CM-6172-01 9 139565107 139565107 G T EGFL7 Intron 0.11 TCGA-CM-6172-01 9 32635465 32635465 G A TAF1L Missense_Mutation p.A38V 0.31 deleterious(0) benign(0.362) TCGA-CM-6172-01 9 79121966 79121966 A G GCNT1 3'UTR 0.37 TCGA-CM-6172-01 9 79321872 79321872 G A PRUNE2 Missense_Mutation p.T1773M 0.03 tolerated(0.19) benign(0.005) TCGA-CM-6172-01 9 99700249 99700249 A C NUTM2G Missense_Mutation p.E469A 0.33 deleterious(0) possibly_damaging(0.612) TCGA-CM-6172-01 X 37027957 37027957 G A FAM47C Missense_Mutation p.D492N 0.65 tolerated_low_confidence(0.09) benign(0.348) TCGA-CM-6172-01 X 63444799 63444799 G A ASB12 Silent p.I244I 0.58 TCGA-CM-6172-01 X 8759331 8759331 C T FAM9A 3'UTR 0.37 TCGA-CM-6674-01 10 100186986 100186987 - G HPS1 Frame_Shift_Ins p.M325Hfs*128 0.31 TCGA-CM-6674-01 10 101515561 101515561 A G CUTC 3'UTR 0.32 TCGA-CM-6674-01 10 102050211 102050211 C T PKD2L1 Silent p.S691S 0.19 TCGA-CM-6674-01 10 102089872 102089873 - G PKD2L1 5'UTR 0.28 TCGA-CM-6674-01 10 104125324 104125324 C T GBF1 Silent p.R758R 0.22 TCGA-CM-6674-01 10 104182675 104182675 G A FBXL15 Silent p.E276E 0.25 TCGA-CM-6674-01 10 105048476 105048476 G A INA 3'UTR 0.36 TCGA-CM-6674-01 10 105133189 105133189 A G TAF5 Missense_Mutation p.T212A 0.16 tolerated(0.81) benign(0) TCGA-CM-6674-01 10 105362382 105362382 C T SH3PXD2A Missense_Mutation p.V837M 0.28 tolerated(0.14) possibly_damaging(0.753) TCGA-CM-6674-01 10 105651933 105651933 T - OBFC1 Frame_Shift_Del p.G278Dfs*16 0.18 TCGA-CM-6674-01 10 105939606 105939606 T - WDR96 Frame_Shift_Del p.S792Afs*19 0.20 TCGA-CM-6674-01 10 118404607 118404607 A - PNLIPRP2 Frame_Shift_Del 0.19 TCGA-CM-6674-01 10 118439049 118439049 G A HSPA12A Silent p.R417R 0.27 TCGA-CM-6674-01 10 128974295 128974295 C T FAM196A Missense_Mutation p.R122H 0.28 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 10 13154633 13154633 G T OPTN Missense_Mutation p.A184S 0.28 tolerated(0.6) benign(0.169) TCGA-CM-6674-01 10 133930823 133930823 C T JAKMIP3 Silent p.G126G 0.24 TCGA-CM-6674-01 10 133980541 133980541 G A JAKMIP3 3'UTR 0.21 TCGA-CM-6674-01 10 134942623 134942623 G A GPR123 Missense_Mutation p.A431T 0.17 tolerated(0.07) benign(0.007) TCGA-CM-6674-01 10 135193760 135193760 G A PAOX Missense_Mutation p.A147T 0.26 tolerated(0.56) benign(0.022) TCGA-CM-6674-01 10 13698682 13698682 C T FRMD4A Silent p.A969A 0.23 TCGA-CM-6674-01 10 14816316 14816316 G A FAM107B Missense_Mutation p.A116V 0.21 tolerated_low_confidence(0.28) benign(0.011) TCGA-CM-6674-01 10 17142212 17142213 - A CUBN Frame_Shift_Ins p.R520Pfs*17 0.16 TCGA-CM-6674-01 10 25701188 25701188 C T GPR158 Missense_Mutation p.P374L 0.25 tolerated(0.21) benign(0.002) TCGA-CM-6674-01 10 29784089 29784089 A G SVIL Missense_Mutation p.I1229T 0.18 deleterious(0.02) benign(0.412) TCGA-CM-6674-01 10 29843774 29843774 C T SVIL Missense_Mutation p.R33H 0.26 deleterious(0.02) possibly_damaging(0.797) TCGA-CM-6674-01 10 30315562 30315562 G T KIAA1462 Missense_Mutation p.A1172D 0.31 tolerated(0.09) probably_damaging(0.923) TCGA-CM-6674-01 10 30316700 30316700 C T KIAA1462 Missense_Mutation p.A793T 0.32 tolerated(0.27) benign(0.221) TCGA-CM-6674-01 10 31810783 31810783 G T ZEB1 Missense_Mutation p.Q841H 0.24 tolerated(0.47) possibly_damaging(0.775) TCGA-CM-6674-01 10 32324595 32324595 T C KIF5B Missense_Mutation p.T273A 0.31 tolerated(0.17) benign(0) TCGA-CM-6674-01 10 37414814 37414814 C T ANKRD30A 5'UTR 0.20 TCGA-CM-6674-01 10 43127438 43127438 C T ZNF33B Silent p.R63R 0.23 TCGA-CM-6674-01 10 46111854 46111854 C T ZFAND4 3'UTR 0.21 TCGA-CM-6674-01 10 47087180 47087180 G A NPY4R Missense_Mutation p.V133I 0.12 deleterious(0) probably_damaging(0.995) TCGA-CM-6674-01 10 49384119 49384119 A G FRMPD2 Intron 0.29 TCGA-CM-6674-01 10 50121753 50121753 C A LRRC18 Missense_Mutation p.G150W 0.28 deleterious(0) possibly_damaging(0.765) TCGA-CM-6674-01 10 51050045 51050045 C T PARG Missense_Mutation p.R346H 0.29 tolerated(0.32) benign(0.313) TCGA-CM-6674-01 10 52566612 52566612 G T A1CF Silent p.P554P 0.19 TCGA-CM-6674-01 10 61552752 61552752 G A CCDC6 Nonsense_Mutation p.Q450* 0.20 TCGA-CM-6674-01 10 64239704 64239704 C T ZNF365 Intron 0.27 TCGA-CM-6674-01 10 64415163 64415163 C - ZNF365 Intron 0.10 TCGA-CM-6674-01 10 64952706 64952706 T C JMJD1C Missense_Mutation p.E2023G 0.28 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 10 70136764 70136764 A G RUFY2 Intron 0.23 TCGA-CM-6674-01 10 70509304 70509304 G A CCAR1 Missense_Mutation p.R327H 0.32 deleterious(0.02) benign(0.03) TCGA-CM-6674-01 10 75010681 75010681 C T MRPS16 Missense_Mutation p.A115T 0.27 tolerated(0.09) benign(0.253) TCGA-CM-6674-01 10 91514406 91514406 T - KIF20B Frame_Shift_Del p.F1455Lfs*10 0.20 TCGA-CM-6674-01 10 93580 93580 C T TUBB8 Missense_Mutation p.R251Q 0.18 deleterious_low_confidence(0.01) benign(0.402) TCGA-CM-6674-01 10 93605608 93605608 C T TNKS2 Nonsense_Mutation p.R757* 0.29 TCGA-CM-6674-01 10 93619298 93619298 C T TNKS2 Silent p.G1058G 0.19 TCGA-CM-6674-01 10 95557307 95557307 G A LGI1 Missense_Mutation p.R474Q 0.11 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 10 97453542 97453542 G A TCTN3 Nonsense_Mutation p.Q39* 0.27 TCGA-CM-6674-01 10 99371342 99371342 G A HOGA1 Missense_Mutation p.A304T 0.36 tolerated(0.16) benign(0.071) TCGA-CM-6674-01 11 102650323 102650323 G A MMP10 Missense_Mutation p.R87C 0.23 deleterious(0.01) benign(0.35) TCGA-CM-6674-01 11 108032008 108032008 G A NPAT Missense_Mutation p.R1269W 0.30 deleterious(0) probably_damaging(0.993) TCGA-CM-6674-01 11 108044069 108044069 T - NPAT Frame_Shift_Del p.S548Vfs*11 0.23 TCGA-CM-6674-01 11 111168790 111168790 A G COLCA1 5'UTR 0.24 TCGA-CM-6674-01 11 113295289 113295289 C T DRD2 Missense_Mutation p.A29T 0.24 tolerated(0.58) benign(0.002) TCGA-CM-6674-01 11 117062728 117062728 G A SIDT2 Missense_Mutation p.V624M 0.21 deleterious(0.02) probably_damaging(0.961) TCGA-CM-6674-01 11 117321288 117321288 A G DSCAML1 Missense_Mutation p.S1289P 0.23 deleterious(0.01) possibly_damaging(0.894) TCGA-CM-6674-01 11 117395685 117395685 G A DSCAML1 Missense_Mutation p.R318C 0.28 deleterious(0.02) probably_damaging(0.988) TCGA-CM-6674-01 11 118773098 118773098 G - BCL9L Frame_Shift_Del p.Q452Sfs*11 0.36 TCGA-CM-6674-01 11 118923525 118923525 C A HYOU1 Missense_Mutation p.G271W 0.21 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 11 119986104 119986104 C T TRIM29 Missense_Mutation p.R549Q 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-6674-01 11 120686133 120686133 G A GRIK4 Silent p.S98S 0.22 TCGA-CM-6674-01 11 120702654 120702654 C T GRIK4 Missense_Mutation p.P202L 0.31 deleterious(0) possibly_damaging(0.712) TCGA-CM-6674-01 11 120998539 120998539 C T TECTA Missense_Mutation p.T618M 0.12 deleterious(0.03) possibly_damaging(0.767) TCGA-CM-6674-01 11 122678800 122678800 C T UBASH3B Silent p.H576H 0.20 TCGA-CM-6674-01 11 124135611 124135611 C T OR8G5 Missense_Mutation p.P297S 0.28 deleterious(0.01) possibly_damaging(0.664) TCGA-CM-6674-01 11 124252382 124252382 G A OR8B2 Silent p.P286P 0.14 TCGA-CM-6674-01 11 124618374 124618374 A G VSIG2 Silent p.L255L 0.12 TCGA-CM-6674-01 11 124756370 124756370 G A ROBO4 Silent p.C928C 0.20 TCGA-CM-6674-01 11 125514027 125514027 G A CHEK1 Missense_Mutation p.R322H 0.22 tolerated(0.16) benign(0.302) TCGA-CM-6674-01 11 128840882 128840882 A G ARHGAP32 Missense_Mutation p.L1395P 0.32 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-CM-6674-01 11 128856475 128856475 A C ARHGAP32 Missense_Mutation p.Y449D 0.23 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 11 129814800 129814800 G - PRDM10 Frame_Shift_Del p.L210Wfs*5 0.21 TCGA-CM-6674-01 11 130275413 130275413 G A ADAMTS8 3'UTR 0.21 TCGA-CM-6674-01 11 134253711 134253711 G A B3GAT1 Missense_Mutation p.R162C 0.35 tolerated(0.12) possibly_damaging(0.546) TCGA-CM-6674-01 11 1618719 1618719 G A KRTAP5-2 3'UTR 0.33 TCGA-CM-6674-01 11 16776514 16776514 G A C11orf58 Missense_Mutation p.D139N 0.18 tolerated(0.3) benign(0.033) TCGA-CM-6674-01 11 17793870 17793870 C T KCNC1 Missense_Mutation p.T410M 0.25 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 11 18042699 18042699 T C TPH1 Missense_Mutation p.T392A 0.22 tolerated(0.06) benign(0.007) TCGA-CM-6674-01 11 193893 193893 G A SCGB1C1 Silent p.A79A 0.13 TCGA-CM-6674-01 11 281782 281784 AGG - NLRP6 In_Frame_Del p.E684del 0.19 TCGA-CM-6674-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.19 TCGA-CM-6674-01 11 33680365 33680365 C T KIAA1549L Silent p.H1679H 0.31 TCGA-CM-6674-01 11 400077 400077 C - PKP3 Frame_Shift_Del p.L464Sfs*183 0.29 TCGA-CM-6674-01 11 46339028 46339028 G A CREB3L1 Silent p.T416T 0.21 TCGA-CM-6674-01 11 46393125 46393125 C T DGKZ Missense_Mutation p.T432I 0.17 deleterious(0) probably_damaging(0.991) TCGA-CM-6674-01 11 46563975 46563975 T A AMBRA1 Missense_Mutation p.Q441L 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CM-6674-01 11 46792421 46792421 G A CKAP5 Nonsense_Mutation p.R1035* 0.28 TCGA-CM-6674-01 11 46897450 46897450 G A LRP4 Missense_Mutation p.R1202C 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 11 47281980 47281980 A - NR1H3 Frame_Shift_Del p.K86Rfs*28 0.22 TCGA-CM-6674-01 11 47359000 47359000 C T MYBPC3 Silent p.A848A 0.32 TCGA-CM-6674-01 11 47732033 47732033 G A AGBL2 Missense_Mutation p.T43M 0.19 tolerated_low_confidence(0.08) benign(0.022) TCGA-CM-6674-01 11 4825512 4825512 C T OR52R1 Silent p.P33P 0.22 TCGA-CM-6674-01 11 4936870 4936870 G A OR51G2 Silent p.N8N 0.24 TCGA-CM-6674-01 11 4945057 4945057 G A OR51G1 Silent p.C171C 0.20 TCGA-CM-6674-01 11 5529987 5529987 C T UBQLN3 Missense_Mutation p.A268T 0.22 deleterious(0) possibly_damaging(0.852) TCGA-CM-6674-01 11 558069 558069 G - C11orf35 Intron 0.36 TCGA-CM-6674-01 11 55872803 55872803 G A OR8H2 Silent p.T95T 0.18 TCGA-CM-6674-01 11 5663655 5663655 A - TRIM34 Frame_Shift_Del p.K266Sfs*9 0.24 TCGA-CM-6674-01 11 57100185 57100185 T C SSRP1 Missense_Mutation p.K228E 0.25 deleterious(0) probably_damaging(0.995) TCGA-CM-6674-01 11 57321980 57321980 G A UBE2L6 Silent p.D80D 0.24 TCGA-CM-6674-01 11 57947787 57947787 C A OR9Q1 Missense_Mutation p.L291M 0.13 deleterious(0.01) possibly_damaging(0.601) TCGA-CM-6674-01 11 59344377 59344377 G A OSBP Missense_Mutation p.R728C 0.24 tolerated(0.07) probably_damaging(0.912) TCGA-CM-6674-01 11 60264985 60264985 C T MS4A12 Missense_Mutation p.P65L 0.19 tolerated(0.64) benign(0) TCGA-CM-6674-01 11 60271286 60271286 C T MS4A12 Missense_Mutation p.A195V 0.23 tolerated(0.07) possibly_damaging(0.677) TCGA-CM-6674-01 11 61278294 61278294 G - LRRC10B 3'UTR 0.17 TCGA-CM-6674-01 11 61563118 61563118 C T FEN1 Silent p.G95G 0.36 TCGA-CM-6674-01 11 62483338 62483339 CT - HNRNPUL2 Frame_Shift_Del p.G686Lfs*3 0.18 TCGA-CM-6674-01 11 6265403 6265403 C T CNGA4 Nonsense_Mutation p.R498* 0.22 TCGA-CM-6674-01 11 6292312 6292312 G A CCKBR Missense_Mutation p.V295M 0.24 deleterious(0.02) benign(0.327) TCGA-CM-6674-01 11 64064635 64064635 T C KCNK4 Missense_Mutation p.C120R 0.23 deleterious(0) probably_damaging(0.936) TCGA-CM-6674-01 11 64812898 64812898 C T NAALADL1 Missense_Mutation p.V690I 0.18 tolerated(0.39) benign(0.009) TCGA-CM-6674-01 11 64879450 64879451 TA - TM7SF2 5'UTR 0.17 TCGA-CM-6674-01 11 65034980 65034980 T C POLA2 Silent p.H79H 0.24 TCGA-CM-6674-01 11 66188658 66188658 G A NPAS4 Missense_Mutation p.R3H 0.20 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 11 6653548 6653548 C A DCHS1 Missense_Mutation p.Q1065H 0.29 deleterious(0.04) possibly_damaging(0.903) TCGA-CM-6674-01 11 6653559 6653559 G T DCHS1 Missense_Mutation p.R1062S 0.27 deleterious(0.05) possibly_damaging(0.81) TCGA-CM-6674-01 11 67266198 67266198 C T PITPNM1 Silent p.A451A 0.26 TCGA-CM-6674-01 11 67821291 67821291 C T CHKA 3'UTR 0.45 TCGA-CM-6674-01 11 68177495 68177495 C T LRP5 Silent p.A735A 0.24 TCGA-CM-6674-01 11 68181335 68181335 G A LRP5 Silent p.V894V 0.20 TCGA-CM-6674-01 11 688450 688450 G A DEAF1 Missense_Mutation p.T133M 0.11 deleterious(0) probably_damaging(0.911) TCGA-CM-6674-01 11 70332609 70332609 C T SHANK2 Silent p.T1264T 0.34 TCGA-CM-6674-01 11 7064085 7064085 C T NLRP14 Silent p.C276C 0.29 TCGA-CM-6674-01 11 71510632 71510632 G A FAM86C1 Missense_Mutation p.R146Q 0.14 tolerated_low_confidence(0.46) benign(0) TCGA-CM-6674-01 11 72289361 72289361 G A PDE2A Missense_Mutation p.P844L 0.34 deleterious(0) probably_damaging(0.997) TCGA-CM-6674-01 11 72423503 72423503 G A ARAP1 Silent p.H286H 0.28 TCGA-CM-6674-01 11 72466764 72466766 AGA - STARD10 In_Frame_Del p.S204del 0.19 TCGA-CM-6674-01 11 73536802 73536802 C T MRPL48 Silent p.H54H 0.19 TCGA-CM-6674-01 11 76507338 76507338 G A TSKU Silent p.A226A 0.21 TCGA-CM-6674-01 11 76823717 76823717 G A CAPN5 Missense_Mutation p.R127H 0.20 tolerated(0.48) probably_damaging(0.992) TCGA-CM-6674-01 11 837536 837536 G - CD151 Frame_Shift_Del p.R178Lfs*43 0.23 TCGA-CM-6674-01 11 9074689 9074689 G A SCUBE2 Silent p.D468D 0.27 TCGA-CM-6674-01 11 92086050 92086050 C T FAT3 Missense_Mutation p.R258C 0.20 probably_damaging(0.999) TCGA-CM-6674-01 11 92532001 92532002 - A FAT3 Frame_Shift_Ins p.N1943Kfs*14 0.17 TCGA-CM-6674-01 11 9462007 9462007 C T IPO7 Silent p.L901L 0.22 TCGA-CM-6674-01 11 99932092 99932092 A G CNTN5 Missense_Mutation p.K377E 0.22 deleterious(0.04) benign(0.07) TCGA-CM-6674-01 12 100048863 100048863 G A ANKS1B Silent p.G418G 0.23 TCGA-CM-6674-01 12 104327926 104327926 G A HSP90B1 Missense_Mutation p.A202T 0.23 deleterious(0.03) benign(0.438) TCGA-CM-6674-01 12 108043014 108043014 C T BTBD11 Missense_Mutation p.P985L 0.26 deleterious(0.03) benign(0.372) TCGA-CM-6674-01 12 109704169 109704169 C T ACACB 3'UTR 0.42 TCGA-CM-6674-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.31 TCGA-CM-6674-01 12 110383073 110383073 C T GIT2 Missense_Mutation p.A575T 0.16 tolerated(0.48) benign(0) TCGA-CM-6674-01 12 112369579 112369579 G A TMEM116 Missense_Mutation p.T287M 0.27 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 12 112843755 112843755 C T RPL6 Missense_Mutation p.V206I 0.22 deleterious(0.05) benign(0.284) TCGA-CM-6674-01 12 114804183 114804183 C T TBX5 Missense_Mutation p.V257M 0.17 deleterious(0) probably_damaging(0.958) TCGA-CM-6674-01 12 117448156 117448156 G A FBXW8 Missense_Mutation p.R423H 0.18 tolerated(0.09) benign(0.032) TCGA-CM-6674-01 12 117725932 117725932 C T NOS1 Silent p.Q358Q 0.33 TCGA-CM-6674-01 12 118520232 118520232 C T VSIG10 Missense_Mutation p.G122S 0.21 tolerated(0.07) possibly_damaging(0.791) TCGA-CM-6674-01 12 120172994 120172994 G A CIT Nonsense_Mutation p.R1043* 0.16 TCGA-CM-6674-01 12 120661577 120661577 A G PXN Silent p.P100P 0.31 TCGA-CM-6674-01 12 121660838 121660838 C T P2RX4 Silent p.H188H 0.31 TCGA-CM-6674-01 12 121670262 121670262 G A P2RX4 Silent p.T326T 0.31 TCGA-CM-6674-01 12 121678523 121678523 C A CAMKK2 Missense_Mutation p.E582D 0.24 tolerated_low_confidence(0.58) benign(0.001) TCGA-CM-6674-01 12 122292610 122292610 G A HPD Missense_Mutation p.T138M 0.21 deleterious(0) probably_damaging(0.935) TCGA-CM-6674-01 12 12334217 12334217 T A LRP6 Missense_Mutation p.D378V 0.19 deleterious(0) probably_damaging(0.995) TCGA-CM-6674-01 12 123416804 123416804 G A ABCB9 Missense_Mutation p.R659W 0.18 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 12 124103199 124103200 TA - DDX55 Intron 0.31 TCGA-CM-6674-01 12 124409685 124409685 G A DNAH10 Missense_Mutation p.R3834H 0.22 probably_damaging(0.975) TCGA-CM-6674-01 12 124841251 124841251 G - NCOR2 Frame_Shift_Del p.R1060Vfs*3 0.23 TCGA-CM-6674-01 12 124886970 124886970 G A NCOR2 Silent p.N540N 0.23 TCGA-CM-6674-01 12 125398220 125398220 T G UBC Missense_Mutation p.K33T 0.09 deleterious(0) benign(0.079) TCGA-CM-6674-01 12 12870941 12870941 C T CDKN1B Silent p.S56S 0.24 TCGA-CM-6674-01 12 132405665 132405665 C T ULK1 Silent p.D994D 0.33 TCGA-CM-6674-01 12 132632428 132632428 C - NOC4L Frame_Shift_Del p.A205Pfs*13 0.19 TCGA-CM-6674-01 12 132636300 132636300 T C NOC4L Missense_Mutation p.Y418H 0.24 deleterious(0) probably_damaging(0.995) TCGA-CM-6674-01 12 16189181 16189181 G A DERA Missense_Mutation p.A256T 0.20 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 12 18446936 18446936 G T PIK3C2G Nonsense_Mutation p.E341* 0.31 TCGA-CM-6674-01 12 21174470 21174470 T C SLCO1B7 Silent p.N98N 0.24 TCGA-CM-6674-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.26 deleterious(0) benign(0.361) TCGA-CM-6674-01 12 2719812 2719812 G A CACNA1C Missense_Mutation p.E1242K 0.28 deleterious(0) possibly_damaging(0.904) TCGA-CM-6674-01 12 29485599 29485599 A - FAR2 Frame_Shift_Del p.K443Nfs*4 0.15 TCGA-CM-6674-01 12 31245824 31245824 C T DDX11 Silent p.Y429Y 0.22 TCGA-CM-6674-01 12 31254803 31254803 G A DDX11 Missense_Mutation p.G697S 0.25 tolerated(0.05) benign(0.01) TCGA-CM-6674-01 12 45567106 45567106 T C PLEKHA8P1 RNA 0.23 TCGA-CM-6674-01 12 47630377 47630377 G A PCED1B 3'UTR 0.23 TCGA-CM-6674-01 12 49427266 49427271 TGCTGC - KMT2D In_Frame_Del p.Q3744_Q3745del 0.26 TCGA-CM-6674-01 12 49993561 49993561 C T FAM186B Missense_Mutation p.R621Q 0.33 tolerated(0.45) benign(0.016) TCGA-CM-6674-01 12 50029645 50029645 G A PRPF40B Missense_Mutation p.R432Q 0.26 deleterious(0) probably_damaging(0.973) TCGA-CM-6674-01 12 50186661 50186661 G A NCKAP5L Missense_Mutation p.P1150L 0.36 tolerated(0.17) benign(0.006) TCGA-CM-6674-01 12 51281053 51281054 - G TMPRSS12 Frame_Shift_Ins p.P271Tfs*10 0.17 TCGA-CM-6674-01 12 51461617 51461617 G A CSRNP2 Nonsense_Mutation p.R183* 0.37 TCGA-CM-6674-01 12 52374937 52374937 G A ACVR1B Missense_Mutation p.M255I 0.29 deleterious(0) benign(0.026) TCGA-CM-6674-01 12 52387842 52387842 G A ACVR1B Missense_Mutation p.R530H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 12 52639328 52639328 C T KRT7 Missense_Mutation p.R373C 0.26 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 12 52985383 52985383 G A KRT72 Silent p.S276S 0.12 TCGA-CM-6674-01 12 53205697 53205697 G A KRT4 Missense_Mutation p.T176M 0.24 deleterious(0.01) possibly_damaging(0.899) TCGA-CM-6674-01 12 53899873 53899873 C T TARBP2 Missense_Mutation p.R348C 0.30 deleterious(0) probably_damaging(0.971) TCGA-CM-6674-01 12 54423658 54423659 - G HOXC6 Frame_Shift_Ins p.G210Rfs*63 0.23 TCGA-CM-6674-01 12 54448742 54448742 G A HOXC4 Missense_Mutation p.R183Q 0.37 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 12 56214144 56214144 C T ORMDL2 Missense_Mutation p.H143Y 0.25 tolerated(0.12) benign(0.381) TCGA-CM-6674-01 12 56651621 56651621 G A ANKRD52 Silent p.I34I 0.19 TCGA-CM-6674-01 12 56827942 56827942 T C TIMELESS Missense_Mutation p.M5V 0.28 tolerated(0.12) benign(0.006) TCGA-CM-6674-01 12 57549891 57549891 C T LRP1 Silent p.Y414Y 0.26 TCGA-CM-6674-01 12 57588227 57588227 G A LRP1 Missense_Mutation p.S2670N 0.12 benign(0.038) TCGA-CM-6674-01 12 57704060 57704060 C T R3HDM2 Missense_Mutation p.R51H 0.20 tolerated(0.08) benign(0.01) TCGA-CM-6674-01 12 60168466 60168466 C T SLC16A7 Silent p.P130P 0.24 TCGA-CM-6674-01 12 64485106 64485106 G A SRGAP1 Missense_Mutation p.R496H 0.23 tolerated(0.24) probably_damaging(0.998) TCGA-CM-6674-01 12 6787521 6787521 G - ZNF384 Frame_Shift_Del p.P153Lfs*16 0.23 TCGA-CM-6674-01 12 6806483 6806483 G A PIANP Missense_Mutation p.R165W 0.14 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-CM-6674-01 12 6859061 6859061 C T MLF2 Missense_Mutation p.R171H 0.13 deleterious(0.05) benign(0.041) TCGA-CM-6674-01 12 6956118 6956118 C A GNB3 3'UTR 0.36 TCGA-CM-6674-01 12 6976727 6976727 C G TPI1 Missense_Mutation p.S36R 0.37 tolerated_low_confidence(0.13) benign(0.016) TCGA-CM-6674-01 12 7649459 7649459 C T CD163 Nonsense_Mutation p.W350* 0.29 TCGA-CM-6674-01 12 7649572 7649572 G A CD163 Silent p.A312A 0.22 TCGA-CM-6674-01 12 8203210 8203210 C T FOXJ2 Missense_Mutation p.R544C 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-CM-6674-01 12 9220350 9220350 A - A2M 3'UTR 0.15 TCGA-CM-6674-01 13 103514758 103514758 G A BIVM-ERCC5 Missense_Mutation p.R846H 0.24 tolerated_low_confidence(0.26) benign(0.001) TCGA-CM-6674-01 13 111290710 111290711 - C CARKD Frame_Shift_Ins p.S341Lfs*39 0.15 TCGA-CM-6674-01 13 23915439 23915439 A G SACS Missense_Mutation p.I859T 0.12 benign(0.05) TCGA-CM-6674-01 13 27259855 27259855 G T WASF3 Missense_Mutation p.R461L 0.28 deleterious(0.02) possibly_damaging(0.557) TCGA-CM-6674-01 13 33344348 33344348 A G PDS5B Silent p.V1238V 0.07 TCGA-CM-6674-01 13 36049542 36049542 C - MAB21L1 Frame_Shift_Del p.G245Afs*13 0.26 TCGA-CM-6674-01 13 36049661 36049661 C T MAB21L1 Silent p.A205A 0.24 TCGA-CM-6674-01 13 37679721 37679721 G A CSNK1A1L 5'UTR 0.40 TCGA-CM-6674-01 13 41383803 41383803 A G SLC25A15 Nonstop_Mutation p.*302Wext*32 0.35 TCGA-CM-6674-01 13 50591493 50591493 A - TRIM13 3'Flank 0.18 TCGA-CM-6674-01 13 51825761 51825761 G A FAM124A Silent p.A122A 0.32 TCGA-CM-6674-01 13 53029673 53029673 C - CKAP2 5'UTR 0.26 TCGA-CM-6674-01 13 60348873 60348873 G A DIAPH3 Missense_Mutation p.P1083L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6674-01 13 78492620 78492620 C T EDNRB Missense_Mutation p.G120D 0.13 tolerated_low_confidence(0.07) possibly_damaging(0.49) TCGA-CM-6674-01 13 86368281 86368281 G A SLITRK6 Missense_Mutation p.A788V 0.21 tolerated(1) benign(0) TCGA-CM-6674-01 13 98637694 98637694 T C IPO5 Missense_Mutation p.V82A 0.21 deleterious(0.04) benign(0.101) TCGA-CM-6674-01 14 101347375 101347375 C T RTL1 Missense_Mutation p.G1251S 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-6674-01 14 102699113 102699113 C T MOK Intron 0.38 TCGA-CM-6674-01 14 102717199 102717199 C T MOK Silent p.T180T 0.37 TCGA-CM-6674-01 14 104571684 104571684 G - ASPG Frame_Shift_Del p.E359Rfs*2 0.25 TCGA-CM-6674-01 14 105177433 105177433 C T INF2 Silent p.D776D 0.15 TCGA-CM-6674-01 14 105350274 105350274 G A CEP170B Silent p.L386L 0.25 TCGA-CM-6674-01 14 105612787 105612787 C A JAG2 Nonsense_Mutation p.G882* 0.17 TCGA-CM-6674-01 14 105818792 105818794 CTT - PACS2 In_Frame_Del p.F96del 0.37 TCGA-CM-6674-01 14 105834821 105834821 T C PACS2 Missense_Mutation p.V229A 0.13 deleterious(0.03) benign(0.149) TCGA-CM-6674-01 14 21794188 21794188 C T RPGRIP1 Missense_Mutation p.L856F 0.30 tolerated(0.44) benign(0.048) TCGA-CM-6674-01 14 21993658 21993658 G T SALL2 Silent p.G68G 0.27 TCGA-CM-6674-01 14 23828776 23828776 C T EFS Missense_Mutation p.R304H 0.36 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 14 23884400 23884400 T G MYH7 Missense_Mutation p.Q1788P 0.10 deleterious(0.01) possibly_damaging(0.461) TCGA-CM-6674-01 14 24647332 24647332 C T REC8 Silent p.R299R 0.24 TCGA-CM-6674-01 14 33242908 33242908 C T AKAP6 Nonsense_Mutation p.R1133* 0.19 TCGA-CM-6674-01 14 33684574 33684574 G - NPAS3 Frame_Shift_Del p.D111Tfs*17 0.22 TCGA-CM-6674-01 14 35263999 35264000 - C BAZ1A Frame_Shift_Ins p.E440Gfs*4 0.17 TCGA-CM-6674-01 14 38725438 38725438 G A CLEC14A 5'UTR 0.24 TCGA-CM-6674-01 14 39819363 39819363 C T CTAGE5 Silent p.F775F 0.20 TCGA-CM-6674-01 14 39868670 39868670 T C FBXO33 3'UTR 0.19 TCGA-CM-6674-01 14 51448530 51448530 G A TRIM9 Missense_Mutation p.S632L 0.26 tolerated(0.07) possibly_damaging(0.49) TCGA-CM-6674-01 14 52174910 52174910 C T FRMD6 Nonsense_Mutation p.R225* 0.17 TCGA-CM-6674-01 14 55515197 55515197 A - SOCS4 3'UTR 0.22 TCGA-CM-6674-01 14 59797372 59797372 C T DAAM1 Missense_Mutation p.A509V 0.17 tolerated(0.07) unknown(0) TCGA-CM-6674-01 14 59834303 59834303 C T DAAM1 Missense_Mutation p.R1005C 0.18 deleterious(0) probably_damaging(0.943) TCGA-CM-6674-01 14 62187170 62187171 - T HIF1A Frame_Shift_Ins p.Y62Lfs*2 0.19 TCGA-CM-6674-01 14 64152942 64152942 G A SGPP1 Nonsense_Mutation p.R403* 0.19 TCGA-CM-6674-01 14 65008510 65008510 G A HSPA2 Missense_Mutation p.G315R 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.865) TCGA-CM-6674-01 14 65194665 65194665 C T PLEKHG3 Missense_Mutation p.R106C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 14 69908889 69908889 G A SLC39A9 Silent p.Q103Q 0.29 TCGA-CM-6674-01 14 70478205 70478205 C T SMOC1 Silent p.Y287Y 0.20 TCGA-CM-6674-01 14 72056075 72056075 T C SIPA1L1 Missense_Mutation p.F496L 0.40 deleterious(0) probably_damaging(0.952) TCGA-CM-6674-01 14 72152247 72152247 G A SIPA1L1 Silent p.S1091S 0.28 TCGA-CM-6674-01 14 73141016 73141016 C - DPF3 Frame_Shift_Del p.G268Afs*4 0.24 TCGA-CM-6674-01 14 74062113 74062113 C T ACOT4 Missense_Mutation p.R341W 0.22 deleterious(0.01) possibly_damaging(0.728) TCGA-CM-6674-01 14 74823757 74823757 A G VRTN Missense_Mutation p.S91G 0.30 deleterious(0) probably_damaging(0.989) TCGA-CM-6674-01 14 76437989 76437989 T - TGFB3 Frame_Shift_Del p.N142Ifs*72 0.19 TCGA-CM-6674-01 14 76620670 76620670 T - GPATCH2L Intron 0.23 TCGA-CM-6674-01 14 77492688 77492688 C T IRF2BPL Missense_Mutation p.R483H 0.10 deleterious(0) unknown(0) TCGA-CM-6674-01 14 81610260 81610260 A G TSHR Missense_Mutation p.T620A 0.09 tolerated(0.08) benign(0.159) TCGA-CM-6674-01 14 88477180 88477180 A - GPR65 5'UTR 0.23 TCGA-CM-6674-01 14 91701504 91701504 C T GPR68 5'UTR 0.43 TCGA-CM-6674-01 14 94464393 94464393 C T LINC00521 RNA 0.25 TCGA-CM-6674-01 14 95918692 95918692 T C SYNE3 Missense_Mutation p.E389G 0.24 deleterious(0) probably_damaging(0.97) TCGA-CM-6674-01 15 22947020 22947020 C T CYFIP1 Silent p.S431S 0.22 TCGA-CM-6674-01 15 30011999 30011999 C T TJP1 Silent p.S995S 0.28 TCGA-CM-6674-01 15 30654974 30654974 C T CHRFAM7A Missense_Mutation p.R254Q 0.28 deleterious(0.03) possibly_damaging(0.834) TCGA-CM-6674-01 15 31664331 31664331 C T KLF13 Silent p.C232C 0.23 TCGA-CM-6674-01 15 32460181 32460181 G A CHRNA7 Missense_Mutation p.R373Q 0.30 deleterious(0.04) probably_damaging(0.975) TCGA-CM-6674-01 15 33876610 33876610 G A RYR3 Missense_Mutation p.G530R 0.29 probably_damaging(0.998) TCGA-CM-6674-01 15 40265106 40265106 G A EIF2AK4 Intron 0.29 TCGA-CM-6674-01 15 40951545 40951546 TT - CASC5 Frame_Shift_Del p.L2268Ifs*3 0.17 TCGA-CM-6674-01 15 44966421 44966421 A G PATL2 Missense_Mutation p.L77P 0.24 deleterious(0.04) possibly_damaging(0.553) TCGA-CM-6674-01 15 45443386 45443386 G C DUOX1 Missense_Mutation p.R985T 0.14 tolerated(0.57) benign(0.001) TCGA-CM-6674-01 15 48433513 48433513 C T MYEF2 3'UTR 0.20 TCGA-CM-6674-01 15 49493398 49493398 A T GALK2 Silent p.G31G 0.24 TCGA-CM-6674-01 15 50535180 50535180 A G HDC Silent p.N422N 0.14 TCGA-CM-6674-01 15 51780284 51780284 A - DMXL2 Frame_Shift_Del p.F1695Sfs*15 0.20 TCGA-CM-6674-01 15 52905922 52905922 T C FAM214A Missense_Mutation p.Q50R 0.14 deleterious(0) probably_damaging(0.991) TCGA-CM-6674-01 15 53049695 53049695 A - ONECUT1 3'UTR 0.24 TCGA-CM-6674-01 15 58006972 58006972 A G POLR2M 3'UTR 0.08 TCGA-CM-6674-01 15 58007033 58007033 G A POLR2M 3'UTR 0.14 TCGA-CM-6674-01 15 59499100 59499100 T - LDHAL6B 5'UTR 0.29 TCGA-CM-6674-01 15 62361818 62361818 G A C2CD4A 3'UTR 0.29 TCGA-CM-6674-01 15 67835585 67835585 T A MAP2K5 5'UTR 0.32 TCGA-CM-6674-01 15 68608000 68608000 G A ITGA11 Silent p.L927L 0.16 TCGA-CM-6674-01 15 72432223 72432223 T - SENP8 Frame_Shift_Del p.L88* 0.20 TCGA-CM-6674-01 15 74043373 74043373 G A C15orf59 Silent p.I33I 0.30 TCGA-CM-6674-01 15 75108827 75108827 G A LMAN1L Silent p.S130S 0.17 TCGA-CM-6674-01 15 75705236 75705236 A G SIN3A Silent p.V208V 0.23 TCGA-CM-6674-01 15 75722562 75722562 G A SIN3A Missense_Mutation p.T52M 0.22 deleterious(0.03) possibly_damaging(0.66) TCGA-CM-6674-01 15 77320234 77320234 G A PSTPIP1 Silent p.S132S 0.20 TCGA-CM-6674-01 15 79317766 79317766 G A RASGRF1 Missense_Mutation p.R478C 0.30 deleterious(0) probably_damaging(0.993) TCGA-CM-6674-01 15 81631769 81631769 G A TMC3 Nonsense_Mutation p.R641* 0.21 TCGA-CM-6674-01 15 84561600 84561601 TG - ADAMTSL3 Frame_Shift_Del p.F477* 0.23 TCGA-CM-6674-01 15 86838537 86838537 C T AGBL1 Missense_Mutation p.R712W 0.11 deleterious(0) probably_damaging(0.99) TCGA-CM-6674-01 15 89421180 89421180 G A HAPLN3 3'UTR 0.29 TCGA-CM-6674-01 15 90171904 90171904 G - KIF7 Frame_Shift_Del p.R1260Afs*16 0.30 TCGA-CM-6674-01 15 90190147 90190147 G - KIF7 Frame_Shift_Del p.L568Wfs*31 0.19 TCGA-CM-6674-01 15 90335516 90335516 G A ANPEP Silent p.I801I 0.33 TCGA-CM-6674-01 15 90771220 90771220 G A SEMA4B Missense_Mutation p.R620Q 0.25 tolerated(0.09) probably_damaging(1) TCGA-CM-6674-01 15 91489871 91489871 C T UNC45A Silent p.A409A 0.12 TCGA-CM-6674-01 15 99670896 99670896 G A SYNM Silent p.S776S 0.30 TCGA-CM-6674-01 16 11217765 11217765 G A CLEC16A Missense_Mutation p.R812H 0.23 deleterious(0) probably_damaging(0.991) TCGA-CM-6674-01 16 12136864 12136864 C T SNX29 Missense_Mutation p.R120C 0.27 deleterious(0) probably_damaging(0.953) TCGA-CM-6674-01 16 1251765 1251765 C T CACNA1H Missense_Mutation p.R439C 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-CM-6674-01 16 14234475 14234475 A G MKL2 Silent p.T4T 0.08 TCGA-CM-6674-01 16 17352863 17352863 G A XYLT1 Missense_Mutation p.R299W 0.40 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 16 19073106 19073106 C T TMC7 Missense_Mutation p.R705C 0.28 deleterious(0) possibly_damaging(0.893) TCGA-CM-6674-01 16 22149746 22149746 G A VWA3A Silent p.P735P 0.15 TCGA-CM-6674-01 16 2284863 2284863 G A E4F1 Missense_Mutation p.G599D 0.23 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 16 2293146 2293146 C T ECI1 Missense_Mutation p.A215T 0.28 tolerated(0.37) benign(0.013) TCGA-CM-6674-01 16 23359983 23359983 G A SCNN1B Silent p.T21T 0.32 TCGA-CM-6674-01 16 2369738 2369738 C A ABCA3 Silent p.T239T 0.15 TCGA-CM-6674-01 16 24226156 24226156 G A PRKCB 3'UTR 0.18 TCGA-CM-6674-01 16 24231527 24231527 G A PRKCB 3'UTR 0.27 TCGA-CM-6674-01 16 2577976 2577976 C T AMDHD2 Silent p.C206C 0.23 TCGA-CM-6674-01 16 27473769 27473769 C T GTF3C1 Missense_Mutation p.R1988H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 16 27483108 27483108 A G GTF3C1 Missense_Mutation p.F1496S 0.24 deleterious(0) probably_damaging(0.991) TCGA-CM-6674-01 16 2848595 2848595 C T SNORA3 5'Flank 0.31 TCGA-CM-6674-01 16 28877882 28877882 G A SH2B1 Missense_Mutation p.R156H 0.32 deleterious(0.01) benign(0.021) TCGA-CM-6674-01 16 29814899 29814899 A - KIF22 Frame_Shift_Del p.K528Rfs*4 0.12 TCGA-CM-6674-01 16 29818200 29818200 C T MAZ Nonsense_Mutation p.Q60* 0.20 TCGA-CM-6674-01 16 2998858 2998858 C T FLYWCH1 3'UTR 0.31 TCGA-CM-6674-01 16 30002928 30002928 G T TAOK2 3'Flank 0.36 TCGA-CM-6674-01 16 30680170 30680170 C T FBRS Missense_Mutation p.R746C 0.29 probably_damaging(0.987) TCGA-CM-6674-01 16 30779829 30779829 A G RNF40 Missense_Mutation p.K653E 0.18 deleterious(0) possibly_damaging(0.688) TCGA-CM-6674-01 16 31098091 31098091 C T RP11-196G11.1 3'Flank 0.25 TCGA-CM-6674-01 16 31196420 31196420 C T FUS Silent p.G228G 0.27 TCGA-CM-6674-01 16 31374294 31374294 C T ITGAX Silent p.D466D 0.34 TCGA-CM-6674-01 16 31477859 31477859 C A ARMC5 Silent p.P819P 0.23 TCGA-CM-6674-01 16 319004 319004 G T ITFG3 Intron 0.22 TCGA-CM-6674-01 16 3639963 3639963 G A SLX4 Missense_Mutation p.R1226W 0.25 deleterious(0.01) possibly_damaging(0.614) TCGA-CM-6674-01 16 4387528 4387528 C A GLIS2 3'UTR 0.21 TCGA-CM-6674-01 16 4387551 4387551 C - GLIS2 3'UTR 0.25 TCGA-CM-6674-01 16 4391481 4391481 C T PAM16 Missense_Mutation p.R38Q 0.17 tolerated(0.6) benign(0.094) TCGA-CM-6674-01 16 4431525 4431525 G A VASN Missense_Mutation p.R216H 0.17 tolerated(0.19) benign(0.017) TCGA-CM-6674-01 16 4559709 4559709 C T HMOX2 Silent p.A301A 0.13 TCGA-CM-6674-01 16 460980 460980 A G DECR2 Missense_Mutation p.T189A 0.17 deleterious(0) probably_damaging(0.98) TCGA-CM-6674-01 16 4745140 4745142 AGA - NUDT16L1 In_Frame_Del p.K201del 0.35 TCGA-CM-6674-01 16 50745399 50745399 C - NOD2 Frame_Shift_Del p.P528Qfs*235 0.26 TCGA-CM-6674-01 16 532545 532545 C T RAB11FIP3 Silent p.S308S 0.15 TCGA-CM-6674-01 16 53859930 53859930 C T FTO Missense_Mutation p.P93L 0.30 deleterious(0.02) probably_damaging(1) TCGA-CM-6674-01 16 53878104 53878104 A G FTO Silent p.E263E 0.20 TCGA-CM-6674-01 16 57060195 57060196 - C NLRC5 Frame_Shift_Ins p.G450Wfs*105 0.15 TCGA-CM-6674-01 16 57508727 57508727 G A DOK4 Missense_Mutation p.R193C 0.31 deleterious(0.04) benign(0.101) TCGA-CM-6674-01 16 57559823 57559823 T C CCDC102A Missense_Mutation p.K268E 0.35 deleterious(0.03) probably_damaging(0.95) TCGA-CM-6674-01 16 58076251 58076251 C T MMP15 Silent p.D427D 0.15 TCGA-CM-6674-01 16 615016 615016 G A C16orf11 Silent p.K475K 0.26 TCGA-CM-6674-01 16 67214469 67214469 G - KIAA0895L Frame_Shift_Del p.S16Afs*13 0.24 TCGA-CM-6674-01 16 67218688 67218688 G A EXOC3L1 Missense_Mutation p.A644V 0.33 tolerated(0.5) benign(0.004) TCGA-CM-6674-01 16 67264305 67264305 C T FHOD1 Missense_Mutation p.R988Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 16 67575938 67575938 C T FAM65A Missense_Mutation p.R437C 0.20 tolerated(0.21) benign(0.005) TCGA-CM-6674-01 16 67577028 67577028 C T FAM65A Missense_Mutation p.T800M 0.24 tolerated(0.06) benign(0) TCGA-CM-6674-01 16 67911200 67911200 A G EDC4 Missense_Mutation p.S178G 0.24 tolerated(0.54) benign(0.003) TCGA-CM-6674-01 16 67943101 67943101 T C PSKH1 Missense_Mutation p.V150A 0.29 deleterious(0) probably_damaging(0.992) TCGA-CM-6674-01 16 68721634 68721634 A C CDH3 Missense_Mutation p.E597A 0.26 tolerated(0.33) benign(0.114) TCGA-CM-6674-01 16 70303587 70303587 G A AARS Missense_Mutation p.A299V 0.26 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 16 70512276 70512276 G A FUK Missense_Mutation p.V915M 0.30 deleterious(0.03) benign(0.23) TCGA-CM-6674-01 16 708330 708330 C T WDR90 Missense_Mutation p.R918C 0.23 tolerated(0.05) possibly_damaging(0.635) TCGA-CM-6674-01 16 70871623 70871623 G A HYDIN Silent p.V4404V 0.23 TCGA-CM-6674-01 16 71149659 71149659 C T HYDIN Missense_Mutation p.V423M 0.21 probably_damaging(0.991) TCGA-CM-6674-01 16 727934 727934 G A RHBDL1 Missense_Mutation p.R400Q 0.22 tolerated(0.94) benign(0.002) TCGA-CM-6674-01 16 72992128 72992128 G A ZFHX3 Silent p.G639G 0.37 TCGA-CM-6674-01 16 75270855 75270855 G A BCAR1 Silent p.G325G 0.29 TCGA-CM-6674-01 16 75611293 75611293 G A GABARAPL2 3'UTR 0.32 TCGA-CM-6674-01 16 75654172 75654172 C A ADAT1 Missense_Mutation p.R77M 0.19 deleterious(0) probably_damaging(0.975) TCGA-CM-6674-01 16 76528953 76528953 C T CNTNAP4 Missense_Mutation p.R670W 0.24 deleterious(0.03) benign(0.021) TCGA-CM-6674-01 16 81058342 81058342 C T CENPN Missense_Mutation p.T219M 0.15 tolerated(0.21) possibly_damaging(0.833) TCGA-CM-6674-01 16 81190482 81190482 G A PKD1L2 RNA 0.18 TCGA-CM-6674-01 16 820105 820105 G - MSLNL Frame_Shift_Del p.S961Afs*80 0.14 TCGA-CM-6674-01 16 82069191 82069191 T C HSD17B2 Silent p.P54P 0.17 TCGA-CM-6674-01 16 841918 841918 C T CHTF18 Missense_Mutation p.A391V 0.24 deleterious(0) probably_damaging(0.992) TCGA-CM-6674-01 16 84651119 84651119 G A COTL1 Nonsense_Mutation p.Q50* 0.19 TCGA-CM-6674-01 16 84695336 84695336 G A KLHL36 Missense_Mutation p.R483H 0.19 deleterious(0) probably_damaging(0.995) TCGA-CM-6674-01 16 85111074 85111074 G A KIAA0513 Silent p.A206A 0.17 TCGA-CM-6674-01 16 88677775 88677775 C T ZC3H18 Nonsense_Mutation p.R436* 0.30 TCGA-CM-6674-01 16 88747818 88747818 G T SNAI3 Silent p.T127T 0.22 TCGA-CM-6674-01 16 88932016 88932016 G A PABPN1L Silent p.P138P 0.26 TCGA-CM-6674-01 16 89261424 89261424 G A CDH15 Nonsense_Mutation p.W769* 0.15 TCGA-CM-6674-01 16 89350411 89350411 C T ANKRD11 Missense_Mutation p.D847N 0.28 probably_damaging(0.995) TCGA-CM-6674-01 16 89351311 89351311 G A ANKRD11 Missense_Mutation p.R547W 0.25 probably_damaging(0.973) TCGA-CM-6674-01 16 89922620 89922620 C T SPIRE2 Missense_Mutation p.R360W 0.30 deleterious(0.01) possibly_damaging(0.707) TCGA-CM-6674-01 16 90001621 90001621 C T TUBB3 Silent p.A254A 0.30 TCGA-CM-6674-01 17 10451168 10451168 G A MYH2 Missense_Mutation p.R24C 0.23 deleterious(0) probably_damaging(0.993) TCGA-CM-6674-01 17 10545863 10545863 C T MYH3 Missense_Mutation p.V587M 0.21 deleterious(0) probably_damaging(0.997) TCGA-CM-6674-01 17 1395792 1395792 G A MYO1C 5'UTR 0.12 TCGA-CM-6674-01 17 1486602 1486602 G A SLC43A2 Missense_Mutation p.R416W 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-CM-6674-01 17 16470664 16470664 T C ZNF287 Missense_Mutation p.T128A 0.21 tolerated(0.17) benign(0.005) TCGA-CM-6674-01 17 17250190 17250190 C - NT5M Frame_Shift_Del p.R208Afs*34 0.26 TCGA-CM-6674-01 17 17697706 17697706 A C RAI1 Missense_Mutation p.S482R 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-CM-6674-01 17 17786141 17786141 T C TOM1L2 Missense_Mutation p.R180G 0.34 tolerated(0.46) benign(0) TCGA-CM-6674-01 17 18387247 18387247 T A LGALS9C Missense_Mutation p.V33D 0.53 deleterious(0) probably_damaging(0.977) TCGA-CM-6674-01 17 19318141 19318141 G A RNF112 Missense_Mutation p.C356Y 0.28 tolerated(0.09) benign(0.124) TCGA-CM-6674-01 17 1939863 1939863 C T DPH1 Silent p.Y152Y 0.17 TCGA-CM-6674-01 17 1940216 1940216 T C DPH1 Missense_Mutation p.S221P 0.21 deleterious(0) probably_damaging(0.918) TCGA-CM-6674-01 17 19645437 19645437 G A ALDH3A1 Missense_Mutation p.T190M 0.20 deleterious(0.02) possibly_damaging(0.891) TCGA-CM-6674-01 17 25969306 25969306 G A LGALS9 Missense_Mutation p.V126M 0.27 tolerated(0.07) possibly_damaging(0.893) TCGA-CM-6674-01 17 26723330 26723330 C T SARM1 3'UTR 0.26 TCGA-CM-6674-01 17 26820649 26820649 C T SLC13A2 Silent p.C362C 0.18 TCGA-CM-6674-01 17 26962426 26962426 G A KIAA0100 Missense_Mutation p.R727W 0.26 deleterious(0) possibly_damaging(0.895) TCGA-CM-6674-01 17 27437542 27437542 C T MYO18A Missense_Mutation p.R1000H 0.31 tolerated(0.23) probably_damaging(0.998) TCGA-CM-6674-01 17 27493495 27493495 G A MYO18A Missense_Mutation p.T155M 0.30 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-CM-6674-01 17 29556462 29556463 - T NF1 Frame_Shift_Ins p.D946* 0.17 TCGA-CM-6674-01 17 29621850 29621850 C T OMG 3'UTR 0.40 TCGA-CM-6674-01 17 2966244 2966244 G A OR1D5 Missense_Mutation p.R220C 0.14 tolerated(0.31) benign(0.005) TCGA-CM-6674-01 17 30648009 30648009 C T RHBDL3 Missense_Mutation p.R326C 0.20 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 17 30821857 30821857 C - MYO1D Frame_Shift_Del p.V981Wfs*56 0.19 TCGA-CM-6674-01 17 33513476 33513476 G A UNC45B Silent p.V898V 0.35 TCGA-CM-6674-01 17 34091662 34091662 C T C17orf50 3'UTR 0.16 TCGA-CM-6674-01 17 3421878 3421878 G A TRPV3 Missense_Mutation p.R693C 0.23 deleterious(0) possibly_damaging(0.857) TCGA-CM-6674-01 17 3577069 3577069 G A P2RX5 3'UTR 0.23 TCGA-CM-6674-01 17 36872036 36872038 TCC - MLLT6 In_Frame_Del p.S338del 0.23 TCGA-CM-6674-01 17 3807233 3807233 G A P2RX1 Silent p.D171D 0.24 TCGA-CM-6674-01 17 39032678 39032678 C T KRT20 Missense_Mutation p.V404M 0.23 tolerated(0.05) possibly_damaging(0.879) TCGA-CM-6674-01 17 39084536 39084536 C T KRT23 Missense_Mutation p.R292H 0.20 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 17 39341523 39341523 A G KRTAP4-1 5'UTR 0.20 TCGA-CM-6674-01 17 39742887 39742887 C - KRT14 Frame_Shift_Del p.G67Afs*51 0.75 TCGA-CM-6674-01 17 41346400 41346401 - T NBR1 Frame_Shift_Ins p.G521Wfs*2 0.20 TCGA-CM-6674-01 17 42225843 42225843 C T C17orf53 Silent p.S224S 0.12 TCGA-CM-6674-01 17 42437003 42437003 C T FAM171A2 Missense_Mutation p.R128Q 0.28 deleterious(0) probably_damaging(0.99) TCGA-CM-6674-01 17 42964076 42964076 C T EFTUD2 Missense_Mutation p.D50N 0.22 tolerated(0.12) benign(0.043) TCGA-CM-6674-01 17 42981818 42981818 C T FAM187A Silent p.A207A 0.26 TCGA-CM-6674-01 17 43221077 43221077 G - ACBD4 3'UTR 0.28 TCGA-CM-6674-01 17 43229076 43229076 G - HEXIM1 3'UTR 0.18 TCGA-CM-6674-01 17 43313573 43313573 G A FMNL1 Missense_Mutation p.V229I 0.14 deleterious(0) unknown(0) TCGA-CM-6674-01 17 43322650 43322650 G A FMNL1 Missense_Mutation p.R920H 0.15 tolerated(0.21) probably_damaging(0.993) TCGA-CM-6674-01 17 4540499 4540499 C T ALOX15 Missense_Mutation p.V288I 0.18 tolerated(0.15) benign(0.009) TCGA-CM-6674-01 17 46606953 46606953 T C HOXB1 Missense_Mutation p.T288A 0.24 tolerated(0.27) benign(0.001) TCGA-CM-6674-01 17 46971765 46971765 C A ATP5G1 Missense_Mutation p.P24H 0.06 deleterious(0) possibly_damaging(0.897) TCGA-CM-6674-01 17 48465442 48465442 G A LRRC59 Missense_Mutation p.R161W 0.21 deleterious(0) probably_damaging(0.936) TCGA-CM-6674-01 17 48625676 48625676 C T SPATA20 Missense_Mutation p.A53V 0.08 tolerated(0.44) benign(0.004) TCGA-CM-6674-01 17 4999252 4999252 G A ZFP3 3'UTR 0.24 TCGA-CM-6674-01 17 56437565 56437566 CA - RNF43 Frame_Shift_Del p.V299Gfs*143 0.12 TCGA-CM-6674-01 17 57771129 57771129 C T CLTC Silent p.A1648A 0.12 TCGA-CM-6674-01 17 6023853 6023853 C T WSCD1 Missense_Mutation p.R534C 0.11 deleterious(0) possibly_damaging(0.766) TCGA-CM-6674-01 17 61497894 61497894 C - TANC2 Frame_Shift_Del p.P1519Lfs*33 0.25 TCGA-CM-6674-01 17 61557860 61557860 T C ACE Missense_Mutation p.L273P 0.21 tolerated(0.09) probably_damaging(0.998) TCGA-CM-6674-01 17 61619644 61619644 A G KCNH6 Missense_Mutation p.Q666R 0.25 tolerated(1) benign(0.002) TCGA-CM-6674-01 17 62796451 62796451 G T PLEKHM1P RNA 0.19 TCGA-CM-6674-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.11 TCGA-CM-6674-01 17 67029947 67029947 A G ABCA9 Missense_Mutation p.I399T 0.24 deleterious(0.04) benign(0.196) TCGA-CM-6674-01 17 6902759 6902759 C T ALOX12 Nonsense_Mutation p.Q261* 0.28 TCGA-CM-6674-01 17 70118954 70118954 C T SOX9 Missense_Mutation p.P176S 0.23 deleterious(0.01) benign(0.021) TCGA-CM-6674-01 17 72699277 72699277 T C CD300LF Intron 0.24 TCGA-CM-6674-01 17 72958033 72958033 C T HID1 Silent p.L221L 0.37 TCGA-CM-6674-01 17 73100323 73100323 T C SLC16A5 Intron 0.12 TCGA-CM-6674-01 17 73490743 73490743 A G KIAA0195 Missense_Mutation p.M815V 0.23 tolerated(1) benign(0) TCGA-CM-6674-01 17 73499074 73499074 C T CASKIN2 Missense_Mutation p.R694H 0.40 tolerated(0.12) probably_damaging(0.927) TCGA-CM-6674-01 17 73700863 73700863 A C SAP30BP Missense_Mutation p.K210T 0.55 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 17 74014321 74014321 C A EVPL Missense_Mutation p.Q486H 0.25 tolerated(0.07) possibly_damaging(0.717) TCGA-CM-6674-01 17 74540031 74540031 G A PRCD 3'Flank 0.30 TCGA-CM-6674-01 17 76113639 76113639 G A TMC6 Missense_Mutation p.A703V 0.32 deleterious(0.04) benign(0.03) TCGA-CM-6674-01 17 76210394 76210394 C G BIRC5 5'UTR 0.18 TCGA-CM-6674-01 17 77086915 77086916 - T RBFOX3 3'UTR 0.28 TCGA-CM-6674-01 17 7733734 7733735 TG - DNAH2 Frame_Shift_Del p.L3992Tfs*2 0.25 TCGA-CM-6674-01 17 7751230 7751231 - C KDM6B Frame_Shift_Ins p.P544Sfs*11 0.14 TCGA-CM-6674-01 17 7752901 7752901 C - KDM6B Frame_Shift_Del p.K1101Rfs*3 0.24 TCGA-CM-6674-01 17 7758518 7758520 TCT - TMEM88 In_Frame_Del p.L46del 0.20 TCGA-CM-6674-01 17 78196625 78196625 G A SLC26A11 Missense_Mutation p.A136T 0.28 tolerated(0.05) benign(0.012) TCGA-CM-6674-01 17 78319406 78319406 G A RNF213 Missense_Mutation p.C2424Y 0.17 probably_damaging(0.999) TCGA-CM-6674-01 17 79100346 79100346 G A AATK Silent p.G212G 0.36 TCGA-CM-6674-01 17 79410046 79410046 G - RP11-1055B8.7 Frame_Shift_Del p.G559Afs*75 0.20 TCGA-CM-6674-01 17 7942760 7942760 C T ALOX15B Silent p.R68R 0.41 TCGA-CM-6674-01 17 79428291 79428291 G A RP11-1055B8.7 Missense_Mutation p.R2201Q 0.25 probably_damaging(0.994) TCGA-CM-6674-01 17 79503997 79503997 G A FSCN2 Missense_Mutation p.G481D 0.20 tolerated(0.24) possibly_damaging(0.861) TCGA-CM-6674-01 17 79612317 79612317 G - TSPAN10 Frame_Shift_Del p.L116Cfs*19 0.28 TCGA-CM-6674-01 17 80350141 80350141 G A OGFOD3 3'UTR 0.36 TCGA-CM-6674-01 17 80373344 80373344 G A OGFOD3 Silent p.G78G 0.23 TCGA-CM-6674-01 17 80684725 80684725 T C FN3KRP Missense_Mutation p.L203P 0.20 deleterious(0) probably_damaging(0.969) TCGA-CM-6674-01 18 21134754 21134754 G A NPC1 Silent p.A507A 0.17 TCGA-CM-6674-01 18 25565037 25565037 C T CDH2 Silent p.V712V 0.24 TCGA-CM-6674-01 18 29867793 29867793 G A GAREM Missense_Mutation p.P256L 0.28 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 18 40503564 40503564 G A RIT2 Silent p.N133N 0.19 TCGA-CM-6674-01 18 43479437 43479437 T C EPG5 Missense_Mutation p.T1581A 0.31 deleterious(0.04) probably_damaging(0.953) TCGA-CM-6674-01 18 44126919 44126919 G A LOXHD1 Silent p.S40S 0.20 TCGA-CM-6674-01 18 44641580 44641581 - C HDHD2 Frame_Shift_Ins p.K179Efs*17 0.20 TCGA-CM-6674-01 18 48447080 48447080 T C ME2 Silent p.I298I 0.26 TCGA-CM-6674-01 18 56050541 56050541 G T NEDD4L Nonsense_Mutation p.E806* 0.17 TCGA-CM-6674-01 18 66358389 66358389 A C TMX3 Intron 0.32 TCGA-CM-6674-01 18 67991832 67991832 C T SOCS6 5'UTR 0.38 TCGA-CM-6674-01 18 6876154 6876154 G A ARHGAP28 Missense_Mutation p.G254S 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-CM-6674-01 18 6898680 6898680 G A ARHGAP28 Intron 0.19 TCGA-CM-6674-01 18 6961587 6961587 C T LAMA1 Missense_Mutation p.V2542M 0.29 tolerated(0.12) possibly_damaging(0.785) TCGA-CM-6674-01 18 72109252 72109252 A G FAM69C Missense_Mutation p.C326R 0.20 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 18 74778307 74778307 T - MBP Frame_Shift_Del p.K29Rfs*36 0.22 TCGA-CM-6674-01 18 77170445 77170445 C T NFATC1 Missense_Mutation p.P44L 0.22 deleterious(0.02) benign(0.022) TCGA-CM-6674-01 18 8807023 8807023 G A SOGA2 Missense_Mutation p.V857M 0.18 tolerated(0.39) possibly_damaging(0.515) TCGA-CM-6674-01 19 10259613 10259613 G A DNMT1 Silent p.Y889Y 0.24 TCGA-CM-6674-01 19 1050981 1050981 G A ABCA7 Missense_Mutation p.V872I 0.36 tolerated(1) benign(0.171) TCGA-CM-6674-01 19 10610217 10610217 C T KEAP1 Missense_Mutation p.D165N 0.21 tolerated(0.53) probably_damaging(0.991) TCGA-CM-6674-01 19 11170785 11170785 C T SMARCA4 Silent p.G1611G 0.24 TCGA-CM-6674-01 19 11353961 11353961 C T DOCK6 Silent p.T453T 0.22 TCGA-CM-6674-01 19 11727772 11727772 C T ZNF627 Missense_Mutation p.R152C 0.24 deleterious(0.03) possibly_damaging(0.545) TCGA-CM-6674-01 19 1206957 1206957 C T STK11 Silent p.G15G 0.22 TCGA-CM-6674-01 19 12244280 12244280 T C ZNF20 Missense_Mutation p.T241A 0.36 tolerated(0.07) benign(0.009) TCGA-CM-6674-01 19 12542364 12542364 A - ZNF443 Frame_Shift_Del p.W208Gfs*34 0.23 TCGA-CM-6674-01 19 12858388 12858388 G A ASNA1 Silent p.Q299Q 0.18 TCGA-CM-6674-01 19 13084412 13084412 G A DAND5 Missense_Mutation p.M178I 0.26 tolerated(0.16) benign(0.014) TCGA-CM-6674-01 19 13482558 13482558 C T CACNA1A Missense_Mutation p.R192Q 0.24 possibly_damaging(0.776) TCGA-CM-6674-01 19 14273939 14273939 G A LPHN1 Missense_Mutation p.T230M 0.33 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 19 1434829 1434829 C T DAZAP1 Missense_Mutation p.S381L 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-CM-6674-01 19 14574647 14574647 G A PKN1 Silent p.A507A 0.38 TCGA-CM-6674-01 19 1556531 1556531 G A MEX3D Silent p.R329R 0.21 TCGA-CM-6674-01 19 15852280 15852280 T C OR10H3 Silent p.P26P 0.30 TCGA-CM-6674-01 19 17001147 17001147 C T F2RL3 Silent p.S291S 0.36 TCGA-CM-6674-01 19 17394932 17394932 T C ANKLE1 Silent p.A411A 0.28 TCGA-CM-6674-01 19 17728637 17728637 C T UNC13A Missense_Mutation p.V1478M 0.26 tolerated(0.09) probably_damaging(0.99) TCGA-CM-6674-01 19 17746904 17746904 C T UNC13A Nonsense_Mutation p.W1048* 0.14 TCGA-CM-6674-01 19 17994765 17994765 C T SLC5A5 Missense_Mutation p.S479L 0.34 tolerated(0.09) benign(0.014) TCGA-CM-6674-01 19 18254666 18254666 C A MAST3 Missense_Mutation p.S782R 0.26 tolerated_low_confidence(0.1) benign(0.008) TCGA-CM-6674-01 19 1827736 1827736 G A REXO1 Missense_Mutation p.P351L 0.38 tolerated(0.24) benign(0.091) TCGA-CM-6674-01 19 18433826 18433826 A G LSM4 Splice_Site p.X1_splice 0.18 TCGA-CM-6674-01 19 18499468 18499468 G A GDF15 Missense_Mutation p.R217H 0.24 deleterious(0.03) benign(0.025) TCGA-CM-6674-01 19 19643500 19643500 A G YJEFN3 Missense_Mutation p.Q90R 0.27 deleterious(0) possibly_damaging(0.907) TCGA-CM-6674-01 19 19655961 19655961 T C CILP2 Silent p.G869G 0.18 TCGA-CM-6674-01 19 19737442 19737442 G A LPAR2 Nonsense_Mutation p.R218* 0.22 TCGA-CM-6674-01 19 20117267 20117267 T G ZNF682 Missense_Mutation p.K348N 0.21 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 19 2110745 2110745 C T AP3D1 Missense_Mutation p.V1046I 0.26 tolerated(0.22) benign(0.036) TCGA-CM-6674-01 19 2717213 2717213 T C DIRAS1 Missense_Mutation p.M198V 0.16 deleterious(0.04) probably_damaging(0.989) TCGA-CM-6674-01 19 3005854 3005855 - G TLE2 Frame_Shift_Ins p.R538Pfs*59 0.19 TCGA-CM-6674-01 19 30193830 30193830 G A C19orf12 Missense_Mutation p.P83L 0.18 deleterious(0) probably_damaging(0.994) TCGA-CM-6674-01 19 30936203 30936203 G A ZNF536 Missense_Mutation p.M578I 0.21 tolerated(0.29) benign(0.001) TCGA-CM-6674-01 19 33095252 33095252 C T ANKRD27 Missense_Mutation p.V858M 0.25 deleterious(0) possibly_damaging(0.867) TCGA-CM-6674-01 19 33392243 33392243 C T CEP89 Silent p.A547A 0.24 TCGA-CM-6674-01 19 33687652 33687652 C T LRP3 Silent p.T30T 0.22 TCGA-CM-6674-01 19 35862295 35862295 G A GPR42 Missense_Mutation p.G12S 0.26 deleterious_low_confidence(0.05) benign(0.287) TCGA-CM-6674-01 19 3600275 3600275 G A TBXA2R Silent p.L120L 0.26 TCGA-CM-6674-01 19 36219725 36219725 C T KMT2B Missense_Mutation p.A1541V 0.23 probably_damaging(0.939) TCGA-CM-6674-01 19 36271668 36271668 G A ARHGAP33 Missense_Mutation p.G260D 0.27 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-CM-6674-01 19 36317401 36317401 G A NPHS1 3'UTR 0.17 TCGA-CM-6674-01 19 37210620 37210623 ACAG - ZNF567 Frame_Shift_Del p.T301Gfs*16 0.23 TCGA-CM-6674-01 19 38161240 38161240 G A ZNF781 5'UTR 0.17 TCGA-CM-6674-01 19 3831806 3831806 C T ZFR2 Silent p.A150A 0.27 TCGA-CM-6674-01 19 39078435 39078435 G T MAP4K1 3'UTR 0.17 TCGA-CM-6674-01 19 39868360 39868360 A G SAMD4B Missense_Mutation p.Y447C 0.20 tolerated(0.17) benign(0.002) TCGA-CM-6674-01 19 41597755 41597755 C T CYP2A13 Missense_Mutation p.T258M 0.23 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 19 42794469 42794469 C - CIC Frame_Shift_Del p.P518Rfs*5 0.19 TCGA-CM-6674-01 19 4362335 4362335 G A SH3GL1 Missense_Mutation p.R301W 0.27 deleterious(0.02) benign(0.339) TCGA-CM-6674-01 19 45810845 45810845 G A CKM Missense_Mutation p.L281F 0.32 deleterious(0.03) possibly_damaging(0.74) TCGA-CM-6674-01 19 46289927 46289927 G T DMWD Missense_Mutation p.P276Q 0.17 deleterious(0) probably_damaging(0.991) TCGA-CM-6674-01 19 46318517 46318517 T C RSPH6A 5'UTR 0.38 TCGA-CM-6674-01 19 47112462 47112462 C T CALM3 3'UTR 0.30 TCGA-CM-6674-01 19 47195016 47195016 C A PRKD2 Missense_Mutation p.G560W 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 19 47823960 47823960 G A C5AR1 Missense_Mutation p.G309D 0.26 tolerated(0.62) benign(0.025) TCGA-CM-6674-01 19 47824042 47824042 G A C5AR1 Silent p.T336T 0.47 TCGA-CM-6674-01 19 48034937 48034937 C T ZNF541 Missense_Mutation p.A1142T 0.34 deleterious(0) probably_damaging(0.997) TCGA-CM-6674-01 19 4816742 4816742 G A TICAM1 Missense_Mutation p.R550W 0.38 deleterious(0) possibly_damaging(0.794) TCGA-CM-6674-01 19 48945576 48945576 C T GRIN2D Silent p.Y870Y 0.25 TCGA-CM-6674-01 19 48981588 48981588 C T CYTH2 Silent p.D314D 0.16 TCGA-CM-6674-01 19 49113236 49113236 G A FAM83E Missense_Mutation p.R219W 0.19 deleterious(0.04) benign(0.064) TCGA-CM-6674-01 19 49134069 49134069 C T DBP 3'UTR 0.32 TCGA-CM-6674-01 19 50391026 50391026 G A TBC1D17 Missense_Mutation p.A532T 0.26 deleterious(0.02) possibly_damaging(0.876) TCGA-CM-6674-01 19 51274092 51274092 G A GPR32 Missense_Mutation p.V79I 0.20 tolerated(1) benign(0.182) TCGA-CM-6674-01 19 51274670 51274670 G A GPR32 Silent p.P271P 0.26 TCGA-CM-6674-01 19 51499471 51499471 C A KLK8 Splice_Site p.X255_splice 0.30 TCGA-CM-6674-01 19 51914253 51914253 A G SIGLEC10 3'UTR 0.26 TCGA-CM-6674-01 19 51920395 51920395 T C SIGLEC10 Missense_Mutation p.E121G 0.21 deleterious(0) possibly_damaging(0.517) TCGA-CM-6674-01 19 52658319 52658319 G A ZNF836 Missense_Mutation p.R873W 0.19 tolerated(0.16) probably_damaging(0.996) TCGA-CM-6674-01 19 53116433 53116433 C T ZNF83 Missense_Mutation p.C462Y 0.27 deleterious(0) probably_damaging(0.99) TCGA-CM-6674-01 19 53762200 53762200 T C VN1R2 Missense_Mutation p.I191T 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CM-6674-01 19 53792897 53792897 A G BIRC8 3'UTR 0.30 TCGA-CM-6674-01 19 53958542 53958542 C T ZNF761 RNA 0.25 TCGA-CM-6674-01 19 54783825 54783825 C T LILRB2 Missense_Mutation p.R59H 0.24 tolerated(1) benign(0.025) TCGA-CM-6674-01 19 54930430 54930430 C T TTYH1 Silent p.P85P 0.26 TCGA-CM-6674-01 19 55539146 55539146 C T GP6 Missense_Mutation p.R137Q 0.27 tolerated_low_confidence(0.47) benign(0.001) TCGA-CM-6674-01 19 55594811 55594811 C T EPS8L1 Missense_Mutation p.P427L 0.20 deleterious(0.01) possibly_damaging(0.74) TCGA-CM-6674-01 19 55831530 55831530 C T TMEM150B Silent p.A67A 0.25 TCGA-CM-6674-01 19 5592842 5592842 C T SAFB2 Missense_Mutation p.R755H 0.26 tolerated(0.57) benign(0.026) TCGA-CM-6674-01 19 56249535 56249535 C T NLRP9 Nonsense_Mutation p.W69* 0.30 TCGA-CM-6674-01 19 56382285 56382285 C T NLRP4 Missense_Mutation p.A816V 0.24 tolerated(0.59) benign(0.012) TCGA-CM-6674-01 19 5687962 5687962 G - HSD11B1L Frame_Shift_Del p.V237Cfs*26 0.11 TCGA-CM-6674-01 19 5696153 5696153 G A LONP1 Missense_Mutation p.T642M 0.41 tolerated(0.1) possibly_damaging(0.689) TCGA-CM-6674-01 19 5707725 5707725 C T LONP1 Missense_Mutation p.V349I 0.21 tolerated(0.35) benign(0.064) TCGA-CM-6674-01 19 57175629 57175629 G A ZNF835 Missense_Mutation p.A313V 0.17 deleterious(0) possibly_damaging(0.689) TCGA-CM-6674-01 19 58083449 58083449 C T ZNF416 3'UTR 0.13 TCGA-CM-6674-01 19 58232349 58232350 AG - ZNF671 Frame_Shift_Del p.Y369Sfs*10 0.18 TCGA-CM-6674-01 19 59073585 59073586 CA - MZF1 Frame_Shift_Del p.C686Wfs*70 0.17 TCGA-CM-6674-01 19 6016147 6016147 T C RFX2 Missense_Mutation p.I245V 0.12 deleterious(0.03) possibly_damaging(0.883) TCGA-CM-6674-01 19 629911 629911 C T POLRMT Missense_Mutation p.G151R 0.25 tolerated(0.52) benign(0.001) TCGA-CM-6674-01 19 6702509 6702509 T G C3 Missense_Mutation p.E776A 0.15 deleterious(0.02) benign(0.134) TCGA-CM-6674-01 19 6760968 6760968 C T SH2D3A Missense_Mutation p.D34N 0.23 deleterious(0) probably_damaging(0.945) TCGA-CM-6674-01 19 691951 691951 C T PRSS57 Silent p.A96A 0.27 TCGA-CM-6674-01 19 7528751 7528751 G A ARHGEF18 Missense_Mutation p.G707S 0.20 tolerated(0.76) benign(0.006) TCGA-CM-6674-01 19 7533828 7533828 C T ARHGEF18 Missense_Mutation p.R1012W 0.29 tolerated(0.07) benign(0.116) TCGA-CM-6674-01 19 7584327 7584327 G A ZNF358 Missense_Mutation p.V67I 0.20 tolerated(0.21) benign(0) TCGA-CM-6674-01 19 7682779 7682779 G A CAMSAP3 Missense_Mutation p.A1223T 0.41 tolerated(0.43) probably_damaging(0.954) TCGA-CM-6674-01 19 7743008 7743008 C T C19orf59 Missense_Mutation p.P68L 0.33 tolerated(0.07) benign(0.388) TCGA-CM-6674-01 19 7977205 7977205 C T MAP2K7 Silent p.Y383Y 0.23 TCGA-CM-6674-01 19 8381449 8381449 C T NDUFA7 Missense_Mutation p.R61Q 0.34 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 19 852976 852976 C T ELANE Silent p.G56G 0.20 TCGA-CM-6674-01 19 9271506 9271506 C T ZNF317 Silent p.C395C 0.18 TCGA-CM-6674-01 1 101705754 101705754 A - S1PR1 3'UTR 0.12 TCGA-CM-6674-01 1 110167930 110167930 C T AMPD2 Missense_Mutation p.R87W 0.28 deleterious_low_confidence(0.02) benign(0.252) TCGA-CM-6674-01 1 110201725 110201725 G A GSTM4 Missense_Mutation p.R187H 0.22 tolerated(0.07) benign(0.052) TCGA-CM-6674-01 1 110231844 110231844 C T GSTM1 Intron 0.46 TCGA-CM-6674-01 1 112281849 112281849 T C FAM212B Missense_Mutation p.R6G 0.13 tolerated(0.21) benign(0.002) TCGA-CM-6674-01 1 114499783 114499783 C T HIPK1 Missense_Mutation p.R544W 0.23 deleterious(0.03) probably_damaging(0.995) TCGA-CM-6674-01 1 11562051 11562052 - C PTCHD2 Frame_Shift_Ins p.S337Qfs*19 0.27 TCGA-CM-6674-01 1 1250235 1250235 T C CPSF3L Missense_Mutation p.K230R 0.19 tolerated(0.22) possibly_damaging(0.447) TCGA-CM-6674-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.33 TCGA-CM-6674-01 1 1290308 1290308 C T MXRA8 Missense_Mutation p.G235R 0.26 deleterious(0) probably_damaging(0.939) TCGA-CM-6674-01 1 144881546 144881546 C T PDE4DIP Missense_Mutation p.R1217H 0.12 tolerated(0.14) possibly_damaging(0.514) TCGA-CM-6674-01 1 145474410 145474410 G A ANKRD34A Missense_Mutation p.R361H 0.26 deleterious(0.02) probably_damaging(0.98) TCGA-CM-6674-01 1 147084716 147084716 C - BCL9 Frame_Shift_Del p.P31Lfs*3 0.28 TCGA-CM-6674-01 1 1480326 1480326 C T SSU72 Missense_Mutation p.R94Q 0.24 tolerated(0.41) benign(0.003) TCGA-CM-6674-01 1 149905307 149905307 C T MTMR11 Missense_Mutation p.C326Y 0.08 deleterious(0) probably_damaging(0.994) TCGA-CM-6674-01 1 150234655 150234655 G - CA14 Frame_Shift_Del p.S121Qfs*27 0.32 TCGA-CM-6674-01 1 151021148 151021149 CT - C1orf56 Frame_Shift_Del p.Q277Efs*48 0.20 TCGA-CM-6674-01 1 151774033 151774033 G - LINGO4 Frame_Shift_Del p.P383Lfs*14 0.28 TCGA-CM-6674-01 1 152382431 152382431 T C CRNN Missense_Mutation p.Q376R 0.23 tolerated(0.07) benign(0.247) TCGA-CM-6674-01 1 152800183 152800183 C T LCE1A Missense_Mutation p.R79C 0.23 deleterious_low_confidence(0) unknown(0) TCGA-CM-6674-01 1 154543869 154543869 G T CHRNB2 Missense_Mutation p.E190D 0.19 tolerated(0.84) benign(0) TCGA-CM-6674-01 1 154995714 154995716 CCT - DCST2 In_Frame_Del p.E661del 0.27 TCGA-CM-6674-01 1 155002940 155002940 G A DCST2 Silent p.T329T 0.21 TCGA-CM-6674-01 1 155171263 155171263 G T THBS3 Missense_Mutation p.P425H 0.27 deleterious(0.02) benign(0.092) TCGA-CM-6674-01 1 155176191 155176191 T C THBS3 Missense_Mutation p.D29G 0.19 deleterious(0.01) possibly_damaging(0.792) TCGA-CM-6674-01 1 155447915 155447915 A G ASH1L Silent p.S1582S 0.26 TCGA-CM-6674-01 1 155722224 155722224 C T GON4L Silent p.G1999G 0.20 TCGA-CM-6674-01 1 1558768 1558768 G T MIB2 Splice_Site p.X94_splice 0.36 TCGA-CM-6674-01 1 156565193 156565193 C A GPATCH4 Nonsense_Mutation p.G314* 0.27 TCGA-CM-6674-01 1 15709772 15709772 G A FHAD1 3'UTR 0.29 TCGA-CM-6674-01 1 158632711 158632711 G T SPTA1 Missense_Mutation p.L749M 0.30 tolerated(0.18) benign(0.15) TCGA-CM-6674-01 1 159170661 159170661 T C CADM3 Silent p.N416N 0.12 TCGA-CM-6674-01 1 159778147 159778147 C T FCRL6 Missense_Mutation p.R78C 0.18 deleterious(0) possibly_damaging(0.823) TCGA-CM-6674-01 1 160012151 160012151 T C KCNJ10 Missense_Mutation p.T58A 0.20 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 1 160094194 160094194 C T ATP1A2 Missense_Mutation p.R202W 0.16 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 1 16060397 16060397 C T PLEKHM2 Missense_Mutation p.R1010C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-6674-01 1 160765997 160765997 A G LY9 Missense_Mutation p.H7R 0.31 tolerated(0.59) benign(0.002) TCGA-CM-6674-01 1 160771603 160771603 G A LY9 Intron 0.16 TCGA-CM-6674-01 1 161641275 161641275 G A FCGR2B Missense_Mutation p.S76N 0.10 tolerated(0.65) benign(0.001) TCGA-CM-6674-01 1 16360228 16360228 C - CLCNKA 3'UTR 0.21 TCGA-CM-6674-01 1 168044791 168044791 T - DCAF6 3'UTR 0.18 TCGA-CM-6674-01 1 168274406 168274406 G A TBX19 Silent p.A296A 0.27 TCGA-CM-6674-01 1 17248507 17248507 C - CROCC 5'UTR 0.38 TCGA-CM-6674-01 1 17250935 17250935 C T CROCC Silent p.R104R 0.33 TCGA-CM-6674-01 1 17292923 17292923 C T CROCC Missense_Mutation p.R1573W 0.31 benign(0.068) TCGA-CM-6674-01 1 17313706 17313708 GTG - ATP13A2 In_Frame_Del p.T973del 0.32 TCGA-CM-6674-01 1 177001640 177001640 C T ASTN1 Missense_Mutation p.D273N 0.21 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-CM-6674-01 1 177001821 177001821 G A ASTN1 Silent p.H212H 0.30 TCGA-CM-6674-01 1 179077199 179077199 G A ABL2 Missense_Mutation p.A1068V 0.29 tolerated_low_confidence(0.53) benign(0.19) TCGA-CM-6674-01 1 180063485 180063486 - A CEP350 Frame_Shift_Ins p.I2751Nfs*29 0.22 TCGA-CM-6674-01 1 182520257 182520257 C T RGSL1 Missense_Mutation p.R986C 0.17 deleterious(0.02) benign(0.075) TCGA-CM-6674-01 1 182845280 182845280 C T DHX9 Silent p.I637I 0.18 TCGA-CM-6674-01 1 183253906 183253906 C T NMNAT2 Silent p.V156V 0.34 TCGA-CM-6674-01 1 185067326 185067326 G A RNF2 Missense_Mutation p.R196Q 0.26 tolerated(0.13) benign(0.203) TCGA-CM-6674-01 1 186157090 186157090 A G HMCN1 Missense_Mutation p.Q5497R 0.24 benign(0.001) TCGA-CM-6674-01 1 19203970 19203970 C T ALDH4A1 Silent p.S359S 0.38 TCGA-CM-6674-01 1 192544928 192544928 C T RGS1 Silent p.R2R 0.29 TCGA-CM-6674-01 1 19423749 19423749 C T UBR4 Missense_Mutation p.R4443H 0.25 probably_damaging(0.991) TCGA-CM-6674-01 1 196303061 196303061 G T KCNT2 Missense_Mutation p.T638K 0.20 tolerated(0.18) benign(0.015) TCGA-CM-6674-01 1 197168889 197168890 - T ZBTB41 Frame_Shift_Ins p.H239Tfs*24 0.19 TCGA-CM-6674-01 1 201789019 201789019 C T NAV1 Nonsense_Mutation p.R1865* 0.13 TCGA-CM-6674-01 1 201838755 201838755 C T IPO9 Missense_Mutation p.T681I 0.28 deleterious(0.01) benign(0.186) TCGA-CM-6674-01 1 202565977 202565977 C T SYT2 Missense_Mutation p.D390N 0.18 deleterious(0) probably_damaging(0.996) TCGA-CM-6674-01 1 203274821 203274821 C T BTG2 Silent p.C29C 0.28 TCGA-CM-6674-01 1 20469991 20469991 C T PLA2G2F Silent p.A74A 0.28 TCGA-CM-6674-01 1 20517232 20517232 G A UBXN10 Missense_Mutation p.A60T 0.22 tolerated(0.09) benign(0.001) TCGA-CM-6674-01 1 205819185 205819185 C T PM20D1 Missense_Mutation p.V6I 0.38 tolerated(0.54) benign(0.001) TCGA-CM-6674-01 1 206653223 206653223 C T IKBKE Silent p.D398D 0.25 TCGA-CM-6674-01 1 207039174 207039174 T C IL20 5'UTR 0.32 TCGA-CM-6674-01 1 208061149 208061149 G A CD34 Silent p.T364T 0.18 TCGA-CM-6674-01 1 216692627 216692627 G A ESRRG Silent p.D345D 0.17 TCGA-CM-6674-01 1 218504519 218504519 C T RRP15 3'UTR 0.21 TCGA-CM-6674-01 1 220231252 220231252 G A BPNT1 3'UTR 0.30 TCGA-CM-6674-01 1 220246193 220246195 TCT - BPNT1 In_Frame_Del p.E110del 0.26 TCGA-CM-6674-01 1 220935055 220935055 T C MARC2 Missense_Mutation p.F168L 0.23 tolerated(0.58) benign(0.078) TCGA-CM-6674-01 1 221054616 221054616 G A HLX Missense_Mutation p.A225T 0.28 tolerated(0.16) benign(0.312) TCGA-CM-6674-01 1 223939721 223939721 G A CAPN2 Missense_Mutation p.D308N 0.25 tolerated(0.05) benign(0.018) TCGA-CM-6674-01 1 223994619 223994619 C A TP53BP2 Missense_Mutation p.A135S 0.30 tolerated(1) benign(0.027) TCGA-CM-6674-01 1 224370939 224370939 G A DEGS1 5'UTR 0.44 TCGA-CM-6674-01 1 228296045 228296045 T - MRPL55 Intron 0.20 TCGA-CM-6674-01 1 228399803 228399803 G A OBSCN Missense_Mutation p.E107K 0.67 probably_damaging(0.995) TCGA-CM-6674-01 1 228404841 228404841 G A OBSCN Missense_Mutation p.M835I 0.27 benign(0.002) TCGA-CM-6674-01 1 228466896 228466896 C T OBSCN Missense_Mutation p.R2812W 0.29 probably_damaging(0.997) TCGA-CM-6674-01 1 228474709 228474709 C T OBSCN Silent p.G3600G 0.15 TCGA-CM-6674-01 1 229577638 229577638 T - NUP133 3'UTR 0.21 TCGA-CM-6674-01 1 229771795 229771795 C T URB2 Missense_Mutation p.R479C 0.24 deleterious(0.04) possibly_damaging(0.828) TCGA-CM-6674-01 1 231299735 231299735 G - TRIM67 Frame_Shift_Del p.A342Pfs*14 0.29 TCGA-CM-6674-01 1 23420679 23420679 G A LUZP1 Missense_Mutation p.R26C 0.33 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 1 23707946 23707946 G A TCEA3 3'UTR 0.21 TCGA-CM-6674-01 1 2452745 2452745 G A PANK4 Missense_Mutation p.R73C 0.23 deleterious(0.02) possibly_damaging(0.557) TCGA-CM-6674-01 1 26073199 26073199 C A MAN1C1 Silent p.T226T 0.26 TCGA-CM-6674-01 1 27426905 27426905 C T SLC9A1 Missense_Mutation p.A781T 0.20 tolerated(0.16) benign(0.002) TCGA-CM-6674-01 1 27721594 27721595 - C GPR3 3'UTR 0.18 TCGA-CM-6674-01 1 27875492 27875492 G - AHDC1 Frame_Shift_Del p.F1046Sfs*96 0.21 TCGA-CM-6674-01 1 29189398 29189398 G A OPRD1 Missense_Mutation p.R241H 0.16 deleterious(0) benign(0.219) TCGA-CM-6674-01 1 32101083 32101083 G A PEF1 Missense_Mutation p.P22L 0.21 tolerated(0.52) unknown(0) TCGA-CM-6674-01 1 32163525 32163525 C T COL16A1 Silent p.E213E 0.38 TCGA-CM-6674-01 1 35334231 35334231 C T DLGAP3 Silent p.A820A 0.16 TCGA-CM-6674-01 1 3647598 3647598 C - TP73 Frame_Shift_Del p.Y487Tfs*11 0.30 TCGA-CM-6674-01 1 38003464 38003464 T C SNIP1 Missense_Mutation p.K359R 0.26 tolerated(0.11) benign(0.206) TCGA-CM-6674-01 1 39749186 39749186 C T MACF1 Missense_Mutation p.T310M 0.30 benign(0.007) TCGA-CM-6674-01 1 42628619 42628619 G A GUCA2A Silent p.G102G 0.12 TCGA-CM-6674-01 1 43613664 43613664 C T FAM183A Silent p.V14V 0.20 TCGA-CM-6674-01 1 43912644 43912646 GAG - SZT2 In_Frame_Del p.E2975del 0.15 TCGA-CM-6674-01 1 43913358 43913358 G A SZT2 Silent p.S3086S 0.22 TCGA-CM-6674-01 1 4772473 4772473 C T AJAP1 Silent p.I181I 0.12 TCGA-CM-6674-01 1 52819263 52819263 C A CC2D1B Silent p.R835R 0.22 TCGA-CM-6674-01 1 52824046 52824046 G A CC2D1B Missense_Mutation p.A473V 0.33 tolerated(0.06) benign(0.016) TCGA-CM-6674-01 1 54387421 54387421 G C HSPB11 Missense_Mutation p.T113S 0.17 tolerated(0.17) benign(0.388) TCGA-CM-6674-01 1 54497921 54497921 G A TMEM59 Missense_Mutation p.P292S 0.37 tolerated(0.21) probably_damaging(0.964) TCGA-CM-6674-01 1 55573019 55573019 C T USP24 Missense_Mutation p.R1552H 0.36 tolerated(0.14) possibly_damaging(0.563) TCGA-CM-6674-01 1 57173269 57173270 CT - PRKAA2 Frame_Shift_Del p.L516Hfs*25 0.26 TCGA-CM-6674-01 1 57258301 57258301 C T C1orf168 Missense_Mutation p.R62H 0.29 tolerated(0.6) benign(0) TCGA-CM-6674-01 1 64605926 64605926 C T ROR1 Missense_Mutation p.R249C 0.23 deleterious(0) probably_damaging(0.982) TCGA-CM-6674-01 1 68954695 68954695 T G DEPDC1 Missense_Mutation p.H165P 0.12 tolerated(0.39) benign(0.001) TCGA-CM-6674-01 1 68955211 68955211 T A DEPDC1 Missense_Mutation p.K132I 0.14 deleterious(0) possibly_damaging(0.841) TCGA-CM-6674-01 1 74507041 74507041 C T LRRIQ3 Missense_Mutation p.R525H 0.25 tolerated(0.49) benign(0.013) TCGA-CM-6674-01 1 76345752 76345752 T C MSH4 Silent p.N565N 0.05 TCGA-CM-6674-01 1 76877876 76877876 G A ST6GALNAC3 Missense_Mutation p.V133I 0.23 possibly_damaging(0.876) TCGA-CM-6674-01 1 90399510 90399510 C T LRRC8D Missense_Mutation p.R295C 0.22 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 1 92941604 92941604 C T GFI1 Silent p.T417T 0.14 TCGA-CM-6674-01 1 94338680 94338681 - T DNTTIP2 Frame_Shift_Ins p.R633Tfs*24 0.20 TCGA-CM-6674-01 1 9642611 9642611 T - SLC25A33 3'UTR 0.27 TCGA-CM-6674-01 1 99772232 99772232 A - LPPR4 Frame_Shift_Del p.K654Rfs*23 0.23 TCGA-CM-6674-01 20 13782274 13782274 C T NDUFAF5 Missense_Mutation p.A221V 0.23 tolerated(0.06) possibly_damaging(0.641) TCGA-CM-6674-01 20 16354907 16354907 A G KIF16B Silent p.D1115D 0.12 TCGA-CM-6674-01 20 21142814 21142814 G A RP4-777D9.2 Intron 0.27 TCGA-CM-6674-01 20 2739597 2739597 G - EBF4 Frame_Shift_Del p.L592Ffs*123 0.17 TCGA-CM-6674-01 20 2779088 2779088 G A CPXM1 Missense_Mutation p.R146W 0.16 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 20 32344991 32344991 C - ZNF341 Frame_Shift_Del p.T262Qfs*21 0.20 TCGA-CM-6674-01 20 33364204 33364204 G A NCOA6 Missense_Mutation p.R95C 0.16 probably_damaging(0.999) TCGA-CM-6674-01 20 35526878 35526878 C T SAMHD1 Missense_Mutation p.A525T 0.21 deleterious(0.04) benign(0.002) TCGA-CM-6674-01 20 36841787 36841787 T C KIAA1755 Missense_Mutation p.K1087R 0.37 tolerated(0.52) benign(0.006) TCGA-CM-6674-01 20 36874357 36874357 A T KIAA1755 Missense_Mutation p.C59S 0.35 deleterious(0.02) probably_damaging(0.982) TCGA-CM-6674-01 20 3785292 3785292 A - CDC25B Frame_Shift_Del p.G524Afs*22 0.20 TCGA-CM-6674-01 20 40081484 40081484 G A CHD6 Silent p.S1073S 0.20 TCGA-CM-6674-01 20 4228731 4228731 C T ADRA1D Missense_Mutation p.V292I 0.56 tolerated(0.13) benign(0.009) TCGA-CM-6674-01 20 43545459 43545459 C T PABPC1L Silent p.A150A 0.23 TCGA-CM-6674-01 20 44691312 44691312 G A NCOA5 Missense_Mutation p.A456V 0.25 tolerated(0.24) benign(0.228) TCGA-CM-6674-01 20 46365634 46365634 C T SULF2 Silent p.A76A 0.25 TCGA-CM-6674-01 20 49197838 49197838 G - PTPN1 Frame_Shift_Del p.G377Efs*27 0.24 TCGA-CM-6674-01 20 51872445 51872445 C - TSHZ2 Frame_Shift_Del p.M819* 0.28 TCGA-CM-6674-01 20 52198883 52198883 G A ZNF217 Silent p.C161C 0.20 TCGA-CM-6674-01 20 5528258 5528258 A G GPCPD1 3'UTR 0.08 TCGA-CM-6674-01 20 57429423 57429423 C T GNAS Missense_Mutation p.A368V 0.21 deleterious_low_confidence(0.03) unknown(0) TCGA-CM-6674-01 20 57767037 57767037 G T ZNF831 Silent p.T321T 0.17 TCGA-CM-6674-01 20 58521343 58521343 G A FAM217B 3'UTR 0.22 TCGA-CM-6674-01 20 60886756 60886756 C - LAMA5 Frame_Shift_Del p.P3242Rfs*47 0.33 TCGA-CM-6674-01 20 60900560 60900560 C T LAMA5 Missense_Mutation p.E1781K 0.16 benign(0.007) TCGA-CM-6674-01 20 60966420 60966420 A G CABLES2 Missense_Mutation p.V394A 0.25 tolerated(0.22) benign(0.06) TCGA-CM-6674-01 20 60990196 60990196 G A RBBP8NL Missense_Mutation p.R259C 0.17 deleterious(0) possibly_damaging(0.613) TCGA-CM-6674-01 20 62194219 62194219 C T HELZ2 Missense_Mutation p.A1986T 0.28 tolerated(1) benign(0.001) TCGA-CM-6674-01 20 62196545 62196545 C T HELZ2 Silent p.T1210T 0.26 TCGA-CM-6674-01 20 62197346 62197346 G A HELZ2 Silent p.P943P 0.38 TCGA-CM-6674-01 20 62560685 62560685 A G DNAJC5 Missense_Mutation p.H43R 0.23 deleterious(0) probably_damaging(0.996) TCGA-CM-6674-01 20 7866373 7866373 C T HAO1 Missense_Mutation p.V318I 0.28 tolerated(0.36) benign(0.002) TCGA-CM-6674-01 20 826248 826248 C T FAM110A Silent p.G267G 0.24 TCGA-CM-6674-01 21 11038931 11038931 C T BAGE2 RNA 0.06 TCGA-CM-6674-01 21 30426572 30426572 A - USP16 3'UTR 0.14 TCGA-CM-6674-01 21 35199157 35199157 A G ITSN1 Silent p.G1073G 0.32 TCGA-CM-6674-01 21 37444401 37444401 G A CBR1 Intron 0.40 TCGA-CM-6674-01 21 37833633 37833633 C A CLDN14 Missense_Mutation p.G121C 0.17 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 21 42748807 42748807 C - MX2 5'UTR 0.17 TCGA-CM-6674-01 21 42815755 42815755 G A MX1 Missense_Mutation p.A324T 0.23 deleterious(0.01) possibly_damaging(0.725) TCGA-CM-6674-01 21 45152205 45152205 C - PDXK Intron 0.15 TCGA-CM-6674-01 21 45656840 45656840 G - ICOSLG Frame_Shift_Del p.Q106Rfs*11 0.27 TCGA-CM-6674-01 21 45744494 45744494 G A PFKL Missense_Mutation p.A591T 0.31 tolerated(0.07) probably_damaging(0.979) TCGA-CM-6674-01 21 45750078 45750078 C T C21orf2 3'UTR 0.18 TCGA-CM-6674-01 21 45819243 45819243 C T TRPM2 Silent p.S709S 0.33 TCGA-CM-6674-01 21 46687510 46687510 G A POFUT2 Silent p.H377H 0.22 TCGA-CM-6674-01 21 46893834 46893834 G A COL18A1 Missense_Mutation p.R406H 0.56 unknown(0) TCGA-CM-6674-01 21 47666592 47666592 A T MCM3AP Missense_Mutation p.V1500D 0.19 deleterious(0) probably_damaging(0.996) TCGA-CM-6674-01 21 47949072 47949072 A G DIP2A Silent p.E390E 0.16 TCGA-CM-6674-01 22 18020245 18020245 G A CECR2 Missense_Mutation p.R526Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 22 18301134 18301134 G A MICAL3 Silent p.H1431H 0.42 TCGA-CM-6674-01 22 18324520 18324520 A G MICAL3 Intron 0.27 TCGA-CM-6674-01 22 19163948 19163950 CTT - SLC25A1 In_Frame_Del p.K269del 0.21 TCGA-CM-6674-01 22 19967633 19967633 C T ARVCF Silent p.S343S 0.33 TCGA-CM-6674-01 22 20024382 20024382 C - TANGO2 Intron 0.15 TCGA-CM-6674-01 22 20843432 20843432 C T KLHL22 Missense_Mutation p.V23M 0.31 tolerated(0.06) benign(0.069) TCGA-CM-6674-01 22 21072036 21072038 CTT - PI4KA In_Frame_Del p.K1759del 0.22 TCGA-CM-6674-01 22 22868378 22868378 G A ZNF280A Missense_Mutation p.T526M 0.25 tolerated(0.38) benign(0) TCGA-CM-6674-01 22 24145582 24145582 C T SMARCB1 Nonsense_Mutation p.R201* 0.22 TCGA-CM-6674-01 22 24582082 24582082 G A SUSD2 Missense_Mutation p.D480N 0.25 tolerated(0.44) benign(0.021) TCGA-CM-6674-01 22 24837050 24837050 C A ADORA2A Missense_Mutation p.H278N 0.23 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 22 25131681 25131681 G A PIWIL3 Missense_Mutation p.A543V 0.23 tolerated(0.08) possibly_damaging(0.879) TCGA-CM-6674-01 22 26422652 26422652 C T MYO18B Silent p.L2238L 0.25 TCGA-CM-6674-01 22 29191304 29191304 G T XBP1 3'UTR 0.29 TCGA-CM-6674-01 22 30821892 30821892 G A MTFP1 Missense_Mutation p.A9T 0.25 tolerated(0.5) benign(0.001) TCGA-CM-6674-01 22 31485720 31485720 G T SMTN Missense_Mutation p.E169D 0.24 tolerated(0.15) benign(0.008) TCGA-CM-6674-01 22 31489512 31489512 C T SMTN Intron 0.20 TCGA-CM-6674-01 22 31495778 31495780 CTT - SMTN In_Frame_Del p.F834del 0.26 TCGA-CM-6674-01 22 31799027 31799027 C T DRG1 Missense_Mutation p.A60V 0.22 tolerated(0.09) benign(0.424) TCGA-CM-6674-01 22 32756236 32756236 C A RFPL3 Intron 0.26 TCGA-CM-6674-01 22 36624006 36624006 A G APOL2 Missense_Mutation p.M153T 0.23 tolerated(0.11) benign(0.022) TCGA-CM-6674-01 22 36689853 36689853 C T MYH9 Silent p.K1298K 0.21 TCGA-CM-6674-01 22 36960759 36960759 C T CACNG2 Missense_Mutation p.R204Q 0.25 deleterious(0.04) probably_damaging(0.968) TCGA-CM-6674-01 22 38379476 38379476 G A SOX10 Missense_Mutation p.R106W 0.24 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 22 38695956 38695956 C T CSNK1E Missense_Mutation p.R227Q 0.25 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-CM-6674-01 22 38890050 38890050 A G DDX17 Missense_Mutation p.L434P 0.26 deleterious(0) probably_damaging(0.987) TCGA-CM-6674-01 22 41231872 41231872 A G ST13 Silent p.I134I 0.21 TCGA-CM-6674-01 22 42525829 42525829 C T CYP2D6 Missense_Mutation p.R88H 0.25 deleterious(0.03) benign(0.046) TCGA-CM-6674-01 22 43570248 43570248 T C TTLL12 Missense_Mutation p.Q399R 0.47 deleterious(0.04) possibly_damaging(0.864) TCGA-CM-6674-01 22 44892583 44892583 G A LDOC1L 3'UTR 0.55 TCGA-CM-6674-01 22 45574280 45574280 C T NUP50 Missense_Mutation p.R168W 0.26 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.22 TCGA-CM-6674-01 22 47082923 47082923 C T CERK 3'UTR 0.25 TCGA-CM-6674-01 22 47189740 47189740 T C TBC1D22A Splice_Site p.X154_splice 0.18 TCGA-CM-6674-01 22 50279867 50279867 G A ZBED4 Missense_Mutation p.A853T 0.28 deleterious(0) probably_damaging(0.99) TCGA-CM-6674-01 22 50636287 50636287 T C TRABD Missense_Mutation p.L236P 0.29 deleterious(0) probably_damaging(0.986) TCGA-CM-6674-01 22 50648623 50648623 C T SELO Missense_Mutation p.T318M 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 22 50655148 50655148 C T SELO Nonsense_Mutation p.Q511* 0.34 TCGA-CM-6674-01 22 50665268 50665268 C T TUBGCP6 Missense_Mutation p.V499M 0.19 deleterious(0) probably_damaging(0.984) TCGA-CM-6674-01 22 50845255 50845256 - T PPP6R2 Frame_Shift_Ins p.S125Qfs*64 0.15 TCGA-CM-6674-01 2 102782697 102782697 G A IL1R1 Missense_Mutation p.G204D 0.25 deleterious(0.03) probably_damaging(0.975) TCGA-CM-6674-01 2 107459724 107459724 C T ST6GAL2 Missense_Mutation p.R237H 0.29 benign(0.022) TCGA-CM-6674-01 2 108910805 108910805 C A SULT1C2 Missense_Mutation p.P91H 0.32 deleterious(0) benign(0.082) TCGA-CM-6674-01 2 109066108 109066108 T C GCC2 Missense_Mutation p.V9A 0.16 tolerated(0.4) benign(0.034) TCGA-CM-6674-01 2 109347840 109347841 - A RANBP2 Frame_Shift_Ins p.N107Kfs*2 0.20 TCGA-CM-6674-01 2 119731937 119731937 C T MARCO Silent p.G163G 0.28 TCGA-CM-6674-01 2 121036310 121036310 G T RALB Missense_Mutation p.G24C 0.27 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 2 128339912 128339914 AAG - MYO7B In_Frame_Del p.K413del 0.27 TCGA-CM-6674-01 2 128464064 128464064 C T WDR33 Missense_Mutation p.G1282R 0.31 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-CM-6674-01 2 130910009 130910009 G A SMPD4 3'UTR 0.27 TCGA-CM-6674-01 2 133547635 133547635 G T NCKAP5 Silent p.S351S 0.22 TCGA-CM-6674-01 2 135957954 135957954 T C ZRANB3 Silent p.S1066S 0.22 TCGA-CM-6674-01 2 15701422 15701422 C T NBAS Missense_Mutation p.A3T 0.25 tolerated_low_confidence(0.06) benign(0.193) TCGA-CM-6674-01 2 158300367 158300367 G A CYTIP Nonsense_Mutation p.R56* 0.23 TCGA-CM-6674-01 2 163693049 163693049 T - KCNH7 Frame_Shift_Del p.N102Mfs*11 0.16 TCGA-CM-6674-01 2 1652984 1652984 G - PXDN Frame_Shift_Del p.C857Afs*5 0.32 TCGA-CM-6674-01 2 166536150 166536150 G A CSRNP3 Missense_Mutation p.G549S 0.22 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-CM-6674-01 2 171070946 171070946 C T MYO3B Missense_Mutation p.R127W 0.19 deleterious(0) probably_damaging(0.983) TCGA-CM-6674-01 2 171702014 171702015 - G GAD1 Splice_Site p.X252_splice 0.26 TCGA-CM-6674-01 2 172180589 172180589 T - METTL8 3'UTR 0.22 TCGA-CM-6674-01 2 176794652 176794652 G A KIAA1715 3'UTR 0.17 TCGA-CM-6674-01 2 179439852 179439852 T - TTN Frame_Shift_Del p.G23670Efs*22 0.13 TCGA-CM-6674-01 2 179472661 179472661 C T TTN Missense_Mutation p.R17618H 0.24 TCGA-CM-6674-01 2 179605181 179605181 G A TTN Missense_Mutation p.A4260V 0.26 TCGA-CM-6674-01 2 179843225 179843226 - A CCDC141 Frame_Shift_Ins p.E135* 0.15 TCGA-CM-6674-01 2 182423323 182423323 C T CERKL Missense_Mutation p.A290T 0.23 tolerated(0.21) benign(0.19) TCGA-CM-6674-01 2 182792964 182792964 C T SSFA2 Missense_Mutation p.A1251V 0.27 tolerated(0.15) benign(0.011) TCGA-CM-6674-01 2 185800758 185800758 T A ZNF804A Missense_Mutation p.I212N 0.11 deleterious(0) probably_damaging(0.979) TCGA-CM-6674-01 2 188217029 188217029 G A CALCRL Missense_Mutation p.R314C 0.23 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 2 196912209 196912209 G A DNAH7 Missense_Mutation p.R89C 0.32 tolerated_low_confidence(0.12) benign(0.163) TCGA-CM-6674-01 2 202619257 202619257 C A ALS2 Missense_Mutation p.G537W 0.22 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.22 TCGA-CM-6674-01 2 210804285 210804285 C T UNC80 Silent p.H2119H 0.25 TCGA-CM-6674-01 2 215831583 215831583 G A ABCA12 Missense_Mutation p.A1958V 0.23 tolerated(0.54) possibly_damaging(0.733) TCGA-CM-6674-01 2 215876237 215876237 T C ABCA12 Missense_Mutation p.H753R 0.23 tolerated(0.37) benign(0.138) TCGA-CM-6674-01 2 215928936 215928936 A T ABCA12 Missense_Mutation p.L57H 0.25 deleterious(0) probably_damaging(0.94) TCGA-CM-6674-01 2 220085472 220085472 G A ATG9A Silent p.H837H 0.15 TCGA-CM-6674-01 2 220404835 220404835 G A CHPF Missense_Mutation p.A533V 0.26 tolerated(1) benign(0.017) TCGA-CM-6674-01 2 232325445 232325445 T C NCL Missense_Mutation p.D249G 0.27 benign(0.001) TCGA-CM-6674-01 2 234869449 234869449 G A TRPM8 Silent p.T464T 0.21 TCGA-CM-6674-01 2 238283447 238283447 C T COL6A3 Missense_Mutation p.R1096H 0.37 probably_damaging(0.987) TCGA-CM-6674-01 2 241389255 241389255 C T AC110619.2 Missense_Mutation p.A155T 0.30 unknown(0) TCGA-CM-6674-01 2 242149757 242149757 C T ANO7 Silent p.A523A 0.19 TCGA-CM-6674-01 2 24260623 24260623 C T C2orf44 Missense_Mutation p.R581H 0.25 deleterious(0.05) benign(0.014) TCGA-CM-6674-01 2 26688886 26688886 C T OTOF Missense_Mutation p.R1520Q 0.25 tolerated(0.38) benign(0.273) TCGA-CM-6674-01 2 27658014 27658014 G A NRBP1 Missense_Mutation p.C194Y 0.28 deleterious(0) possibly_damaging(0.732) TCGA-CM-6674-01 2 28828752 28828752 A G PLB1 Silent p.P998P 0.20 TCGA-CM-6674-01 2 31596761 31596761 G - XDH Frame_Shift_Del p.P555Qfs*67 0.24 TCGA-CM-6674-01 2 31758716 31758716 A G AL133247.2 Intron 0.24 TCGA-CM-6674-01 2 32689661 32689661 G A BIRC6 Missense_Mutation p.V1676M 0.24 benign(0.401) TCGA-CM-6674-01 2 32754832 32754832 T C BIRC6 Missense_Mutation p.V4012A 0.16 benign(0.086) TCGA-CM-6674-01 2 32819129 32819129 T C BIRC6 Splice_Site p.X4501_splice 0.16 TCGA-CM-6674-01 2 44065571 44065571 C T ABCG5 Intron 0.33 TCGA-CM-6674-01 2 44102501 44102501 T C ABCG8 Missense_Mutation p.S569P 0.08 tolerated(0.21) possibly_damaging(0.756) TCGA-CM-6674-01 2 48602404 48602405 - A FOXN2 Frame_Shift_Ins p.I375Nfs*3 0.16 TCGA-CM-6674-01 2 49190277 49190277 G A FSHR Silent p.I561I 0.16 TCGA-CM-6674-01 2 54570948 54570948 C A C2orf73 Missense_Mutation p.P109Q 0.29 tolerated(0.05) probably_damaging(1) TCGA-CM-6674-01 2 55130526 55130526 C T EML6 Missense_Mutation p.A1099V 0.16 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 2 60688454 60688454 G A BCL11A Silent p.G531G 0.39 TCGA-CM-6674-01 2 61708360 61708360 G T XPO1 Missense_Mutation p.A1010D 0.21 tolerated(0.35) possibly_damaging(0.632) TCGA-CM-6674-01 2 66798466 66798467 - C MEIS1 3'UTR 0.28 TCGA-CM-6674-01 2 68546437 68546437 G A CNRIP1 Silent p.F32F 0.17 TCGA-CM-6674-01 2 71062705 71062705 G A CD207 Missense_Mutation p.P36L 0.22 tolerated(1) benign(0.006) TCGA-CM-6674-01 2 73868439 73868439 C T NAT8 Missense_Mutation p.G106D 0.27 tolerated(0.21) benign(0.077) TCGA-CM-6674-01 2 74758994 74758994 G A HTRA2 Missense_Mutation p.G353R 0.19 deleterious(0.04) probably_damaging(0.954) TCGA-CM-6674-01 2 85895288 85895288 G A SFTPB Silent p.L19L 0.17 TCGA-CM-6674-01 2 96956435 96956435 A G SNRNP200 Missense_Mutation p.L847P 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-CM-6674-01 3 10320692 10320692 C T TATDN2 Missense_Mutation p.R757C 0.22 deleterious(0) possibly_damaging(0.893) TCGA-CM-6674-01 3 108096331 108096331 T C HHLA2 3'UTR 0.36 TCGA-CM-6674-01 3 108117614 108117614 C T MYH15 Missense_Mutation p.R1688Q 0.26 tolerated(0.06) benign(0.013) TCGA-CM-6674-01 3 111923223 111923223 A - SLC9C1 Frame_Shift_Del p.S672Hfs*9 0.19 TCGA-CM-6674-01 3 112357945 112357945 C T CCDC80 Missense_Mutation p.E270K 0.32 deleterious(0) possibly_damaging(0.881) TCGA-CM-6674-01 3 112732249 112732249 C T C3orf17 Missense_Mutation p.E115K 0.20 tolerated(0.66) benign(0.019) TCGA-CM-6674-01 3 112738502 112738502 G - C3orf17 5'UTR 0.23 TCGA-CM-6674-01 3 11304324 11304324 G A HRH1 3'UTR 0.26 TCGA-CM-6674-01 3 121573628 121573628 G A EAF2 Missense_Mutation p.R99Q 0.17 tolerated(0.39) possibly_damaging(0.904) TCGA-CM-6674-01 3 124578094 124578094 C A ITGB5 Missense_Mutation p.R119L 0.24 deleterious(0.02) probably_damaging(1) TCGA-CM-6674-01 3 128584128 128584128 A - RP11-723O4.9 5'Flank 0.20 TCGA-CM-6674-01 3 129370547 129370547 G A TMCC1 Missense_Mutation p.A580V 0.24 tolerated(0.1) possibly_damaging(0.905) TCGA-CM-6674-01 3 130282384 130282384 G A COL6A6 Silent p.T179T 0.28 TCGA-CM-6674-01 3 132407537 132407537 G A NPHP3 Missense_Mutation p.R1028C 0.27 deleterious(0) probably_damaging(0.953) TCGA-CM-6674-01 3 137748708 137748708 G A CLDN18 Missense_Mutation p.M191I 0.22 tolerated(0.23) benign(0.008) TCGA-CM-6674-01 3 140401492 140401492 C T TRIM42 Missense_Mutation p.A177V 0.24 tolerated(0.09) possibly_damaging(0.786) TCGA-CM-6674-01 3 142769829 142769829 A - U2SURP Frame_Shift_Del p.K866Nfs*10 0.22 TCGA-CM-6674-01 3 151012380 151012380 C T GPR87 Silent p.V218V 0.33 TCGA-CM-6674-01 3 151458609 151458609 G A AADACL2 Missense_Mutation p.R105Q 0.23 deleterious(0.02) benign(0.04) TCGA-CM-6674-01 3 152882898 152882898 T - RAP2B 3'UTR 0.22 TCGA-CM-6674-01 3 154002694 154002695 - T DHX36 Frame_Shift_Ins p.M705Nfs*20 0.26 TCGA-CM-6674-01 3 160122433 160122433 C T SMC4 Intron 0.23 TCGA-CM-6674-01 3 170137082 170137082 T C CLDN11 Splice_Site p.X76_splice 0.20 TCGA-CM-6674-01 3 170885050 170885050 T - TNIK Frame_Shift_Del p.K261Nfs*11 0.20 TCGA-CM-6674-01 3 171455388 171455388 C T PLD1 Silent p.T74T 0.22 TCGA-CM-6674-01 3 175184854 175184854 C T NAALADL2 Missense_Mutation p.A472V 0.17 deleterious(0.02) probably_damaging(0.99) TCGA-CM-6674-01 3 179052260 179052260 T - ZNF639 3'UTR 0.10 TCGA-CM-6674-01 3 180326332 180326332 T - TTC14 Intron 0.18 TCGA-CM-6674-01 3 184019349 184019349 G A PSMD2 Missense_Mutation p.V128I 0.20 tolerated(0.06) benign(0.132) TCGA-CM-6674-01 3 186917678 186917678 C T RTP1 Silent p.S204S 0.32 TCGA-CM-6674-01 3 186968066 186968066 A G MASP1 Missense_Mutation p.W355R 0.12 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 3 19436650 19436650 C T KCNH8 Silent p.L342L 0.31 TCGA-CM-6674-01 3 194409270 194409273 AAAT - FAM43A 3'UTR 0.17 TCGA-CM-6674-01 3 194877200 194877200 G A XXYLT1 Missense_Mutation p.R255W 0.37 deleterious(0.01) probably_damaging(0.939) TCGA-CM-6674-01 3 23848848 23848850 AAG - UBE2E1 In_Frame_Del p.K32del 0.20 TCGA-CM-6674-01 3 29941231 29941231 C T RBMS3 Silent p.Y308Y 0.32 TCGA-CM-6674-01 3 29985714 29985714 G T RBMS3 Missense_Mutation p.R356M 0.26 tolerated_low_confidence(0.11) benign(0.001) TCGA-CM-6674-01 3 3067806 3067806 C - CNTN4 Frame_Shift_Del p.P504Lfs*18 0.23 TCGA-CM-6674-01 3 30713371 30713373 CAA - TGFBR2 In_Frame_Del p.N259del 0.17 TCGA-CM-6674-01 3 36874532 36874532 C T TRANK1 Missense_Mutation p.R2137Q 0.24 tolerated(1) benign(0.001) TCGA-CM-6674-01 3 37058999 37058999 C - MLH1 Frame_Shift_Del p.R265Vfs*3 0.19 TCGA-CM-6674-01 3 38646305 38646305 C A SCN5A Missense_Mutation p.R478M 0.21 tolerated(0.24) possibly_damaging(0.736) TCGA-CM-6674-01 3 42438745 42438745 C T LYZL4 3'UTR 0.20 TCGA-CM-6674-01 3 43121157 43121157 C T POMGNT2 3'UTR 0.23 TCGA-CM-6674-01 3 45436083 45436083 G T LARS2 Missense_Mutation p.K46N 0.17 tolerated(0.05) benign(0.063) TCGA-CM-6674-01 3 46245260 46245260 G A CCR1 Missense_Mutation p.T182I 0.09 tolerated(0.11) probably_damaging(0.933) TCGA-CM-6674-01 3 48461121 48461122 - C PLXNB1 Frame_Shift_Ins p.D859* 0.25 TCGA-CM-6674-01 3 48628206 48628206 G A COL7A1 Silent p.F560F 0.35 TCGA-CM-6674-01 3 49316277 49316277 G A USP4 Silent p.N901N 0.19 TCGA-CM-6674-01 3 50148187 50148187 A G RBM5 Missense_Mutation p.Y480C 0.23 deleterious(0) probably_damaging(0.99) TCGA-CM-6674-01 3 50334110 50334110 G T NAT6 Missense_Mutation p.P284H 0.11 tolerated(0.54) possibly_damaging(0.896) TCGA-CM-6674-01 3 51433986 51433986 A G VPRBP 3'UTR 0.25 TCGA-CM-6674-01 3 51696844 51696844 G A RAD54L2 Missense_Mutation p.R1271Q 0.31 tolerated_low_confidence(0.64) benign(0.005) TCGA-CM-6674-01 3 51697106 51697106 G A RAD54L2 Silent p.T1358T 0.27 TCGA-CM-6674-01 3 52003637 52003637 G - ABHD14B Intron 0.29 TCGA-CM-6674-01 3 52088099 52088099 C T DUSP7 Missense_Mutation p.G270D 0.11 deleterious(0.03) possibly_damaging(0.571) TCGA-CM-6674-01 3 52256642 52256642 C T TLR9 Missense_Mutation p.V718M 0.18 tolerated(0.74) benign(0.306) TCGA-CM-6674-01 3 52454435 52454435 T - PHF7 Frame_Shift_Del p.F134Lfs*85 0.23 TCGA-CM-6674-01 3 52883823 52883823 G A TMEM110 Missense_Mutation p.R138C 0.29 tolerated(0.17) probably_damaging(0.964) TCGA-CM-6674-01 3 64133059 64133059 T C PRICKLE2 Silent p.V369V 0.34 TCGA-CM-6674-01 3 66436678 66436678 C T LRIG1 Missense_Mutation p.A506T 0.26 tolerated(0.07) possibly_damaging(0.86) TCGA-CM-6674-01 3 69072455 69072455 T C TMF1 Missense_Mutation p.Y1052C 0.16 deleterious(0) probably_damaging(0.995) TCGA-CM-6674-01 3 71026983 71026983 C T FOXP1 Silent p.S450S 0.26 TCGA-CM-6674-01 3 78767030 78767030 G A ROBO1 Nonsense_Mutation p.R221* 0.24 TCGA-CM-6674-01 3 97664642 97664643 CT - MINA Frame_Shift_Del p.E413Vfs*20 0.17 TCGA-CM-6674-01 3 97669709 97669709 T C MINA Missense_Mutation p.D270G 0.20 deleterious(0.02) probably_damaging(0.969) TCGA-CM-6674-01 3 9854628 9854630 AGA - TTLL3 In_Frame_Del p.K162del 0.16 TCGA-CM-6674-01 4 108955572 108955572 G A HADH 3'UTR 0.29 TCGA-CM-6674-01 4 110980860 110980860 G C ELOVL6 Missense_Mutation p.T91S 0.28 tolerated(0.28) benign(0.01) TCGA-CM-6674-01 4 113505327 113505327 G A C4orf21 Missense_Mutation p.R1369C 0.21 deleterious(0.03) possibly_damaging(0.548) TCGA-CM-6674-01 4 118005603 118005603 A T TRAM1L1 Missense_Mutation p.I316N 0.24 deleterious(0) possibly_damaging(0.878) TCGA-CM-6674-01 4 119951742 119951742 G A SYNPO2 Silent p.S604S 0.28 TCGA-CM-6674-01 4 120528224 120528224 G A PDE5A Silent p.D127D 0.11 TCGA-CM-6674-01 4 122853782 122853782 A G TRPC3 Missense_Mutation p.C211R 0.21 tolerated(0.39) benign(0.001) TCGA-CM-6674-01 4 126402718 126402718 G A FAT4 Missense_Mutation p.R4214H 0.19 possibly_damaging(0.526) TCGA-CM-6674-01 4 140258063 140258063 A G NAA15 Silent p.E67E 0.21 TCGA-CM-6674-01 4 147442908 147442908 T - SLC10A7 5'UTR 0.20 TCGA-CM-6674-01 4 151520174 151520174 T - LRBA Frame_Shift_Del p.T2011Qfs*11 0.17 TCGA-CM-6674-01 4 15556832 15556832 C T CC2D2A Missense_Mutation p.S875L 0.24 tolerated(0.29) benign(0.005) TCGA-CM-6674-01 4 164393757 164393757 G A TKTL2 Missense_Mutation p.A377V 0.19 deleterious(0) probably_damaging(0.991) TCGA-CM-6674-01 4 165878221 165878221 G A FAM218A Missense_Mutation p.G16E 0.24 tolerated_low_confidence(0.49) probably_damaging(0.969) TCGA-CM-6674-01 4 169189074 169189074 G A DDX60 Silent p.T949T 0.25 TCGA-CM-6674-01 4 170077733 170077733 C T SH3RF1 Missense_Mutation p.R164Q 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-CM-6674-01 4 1719052 1719052 C T TMEM129 Missense_Mutation p.R315H 0.50 tolerated(0.05) possibly_damaging(0.699) TCGA-CM-6674-01 4 1729856 1729856 G A TACC3 Missense_Mutation p.A243T 0.13 tolerated(0.23) benign(0.028) TCGA-CM-6674-01 4 174169474 174169474 T - GALNT7 Frame_Shift_Del p.L158Wfs*25 0.20 TCGA-CM-6674-01 4 177605151 177605151 G A VEGFC Missense_Mutation p.P397S 0.23 tolerated(0.36) benign(0.009) TCGA-CM-6674-01 4 190862102 190862102 C T FRG1 5'UTR 0.26 TCGA-CM-6674-01 4 2272571 2272571 G A ZFYVE28 Missense_Mutation p.R849C 0.27 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 4 24544640 24544640 A G DHX15 Missense_Mutation p.S420P 0.29 deleterious(0) probably_damaging(0.985) TCGA-CM-6674-01 4 26426279 26426288 GAATTCACAG - RBPJ Frame_Shift_Del p.E234Sfs*26 0.09 TCGA-CM-6674-01 4 26490998 26490998 G A CCKAR Missense_Mutation p.T74M 0.17 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 4 2952877 2952877 C T NOP14 Silent p.V322V 0.33 TCGA-CM-6674-01 4 3494594 3494594 C T DOK7 Missense_Mutation p.T294M 0.24 deleterious(0.02) benign(0.023) TCGA-CM-6674-01 4 38799984 38799984 G A TLR1 Silent p.L157L 0.13 TCGA-CM-6674-01 4 47563007 47563007 T - ATP10D Frame_Shift_Del p.L863* 0.20 TCGA-CM-6674-01 4 47682229 47682229 C T CORIN Missense_Mutation p.R354H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 4 54876128 54876132 AAAAC - CHIC2 3'UTR 0.17 TCGA-CM-6674-01 4 65170883 65170883 C T TECRL Splice_Site p.X244_splice 0.30 TCGA-CM-6674-01 4 76446952 76446952 A G THAP6 Missense_Mutation p.R99G 0.27 tolerated(0.4) benign(0.013) TCGA-CM-6674-01 4 76881223 76881223 A G SDAD1 Silent p.D493D 0.28 TCGA-CM-6674-01 4 76924806 76924806 T - CXCL9 Frame_Shift_Del p.K108Rfs*4 0.27 TCGA-CM-6674-01 4 77247138 77247138 C T CCDC158 Missense_Mutation p.R1010H 0.30 tolerated(0.07) probably_damaging(0.993) TCGA-CM-6674-01 4 79434660 79434660 C T FRAS1 Silent p.H3376H 0.25 TCGA-CM-6674-01 4 96761961 96761961 T C PDHA2 Silent p.C220C 0.29 TCGA-CM-6674-01 4 9784676 9784676 C T DRD5 Silent p.F341F 0.13 TCGA-CM-6674-01 4 9785349 9785349 G C DRD5 3'UTR 0.20 TCGA-CM-6674-01 4 9785421 9785421 G T DRD5 3'UTR 0.12 TCGA-CM-6674-01 5 1064243 1064243 G A SLC12A7 Silent p.D854D 0.25 TCGA-CM-6674-01 5 108380409 108380409 C T FER Missense_Mutation p.T581I 0.24 tolerated(0.11) benign(0.007) TCGA-CM-6674-01 5 112154933 112154933 C T APC Missense_Mutation p.R402C 0.25 benign(0.028) TCGA-CM-6674-01 5 112926864 112926864 C T YTHDC2 Missense_Mutation p.R1318W 0.22 deleterious(0.01) possibly_damaging(0.722) TCGA-CM-6674-01 5 121187702 121187702 C T FTMT Missense_Mutation p.S15L 0.30 deleterious_low_confidence(0) benign(0.17) TCGA-CM-6674-01 5 126154700 126154701 AG - LMNB1 Frame_Shift_Del p.E345Dfs*14 0.29 TCGA-CM-6674-01 5 127626457 127626457 C - FBN2 Frame_Shift_Del p.D2138Tfs*111 0.22 TCGA-CM-6674-01 5 131303716 131303716 C T ACSL6 Missense_Mutation p.V505I 0.30 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 5 135489777 135489777 T C SMAD5 Missense_Mutation p.C110R 0.14 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 5 137088840 137088842 AGA - HNRNPA0 In_Frame_Del p.F305del 0.19 TCGA-CM-6674-01 5 137485405 137485405 C T BRD8 Missense_Mutation p.E1068K 0.29 deleterious(0.02) benign(0.012) TCGA-CM-6674-01 5 138855956 138855956 C A TMEM173 Missense_Mutation p.G344C 0.23 tolerated(0.28) benign(0.072) TCGA-CM-6674-01 5 139060993 139060993 A T CXXC5 Missense_Mutation p.K295N 0.18 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 5 139838233 139838233 T C ANKHD1 Silent p.R422R 0.10 TCGA-CM-6674-01 5 140038610 140038610 G A IK Missense_Mutation p.R346H 0.28 tolerated(0.46) benign(0.339) TCGA-CM-6674-01 5 140038638 140038638 C G IK Missense_Mutation p.D355E 0.30 tolerated_low_confidence(1) benign(0) TCGA-CM-6674-01 5 140229524 140229524 G A PCDHA9 Missense_Mutation p.A482T 0.23 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-CM-6674-01 5 140250148 140250148 C T PCDHA11 Missense_Mutation p.A487V 0.27 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-CM-6674-01 5 140308502 140308502 G A PCDHAC1 Silent p.G675G 0.22 TCGA-CM-6674-01 5 140517122 140517122 T C PCDHB5 Silent p.F702F 0.17 TCGA-CM-6674-01 5 140517248 140517248 A G PCDHB5 Silent p.L744L 0.20 TCGA-CM-6674-01 5 140731559 140731559 G A PCDHGB1 Missense_Mutation p.A578T 0.20 deleterious(0.04) probably_damaging(1) TCGA-CM-6674-01 5 140754208 140754208 C T PCDHGA6 Silent p.A186A 0.21 TCGA-CM-6674-01 5 140798974 140798974 G A PCDHGB7 Silent p.A516A 0.21 TCGA-CM-6674-01 5 146257698 146257698 G A PPP2R2B Intron 0.20 TCGA-CM-6674-01 5 147020325 147020325 G A JAKMIP2 Missense_Mutation p.S448F 0.23 tolerated(0.1) benign(0.413) TCGA-CM-6674-01 5 149425096 149425096 C T HMGXB3 Missense_Mutation p.T933I 0.22 deleterious(0) probably_damaging(0.987) TCGA-CM-6674-01 5 149459716 149459716 A G CSF1R Missense_Mutation p.I164T 0.25 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 5 149505039 149505039 C T PDGFRB Silent p.T592T 0.29 TCGA-CM-6674-01 5 150413340 150413340 A G TNIP1 Silent p.H536H 0.22 TCGA-CM-6674-01 5 150701761 150701761 G A SLC36A2 Silent p.V342V 0.18 TCGA-CM-6674-01 5 150867978 150867978 G A SLC36A1 3'UTR 0.22 TCGA-CM-6674-01 5 157232911 157232911 T C CLINT1 Missense_Mutation p.Q302R 0.24 tolerated(0.39) possibly_damaging(0.528) TCGA-CM-6674-01 5 169116272 169116272 C T DOCK2 Nonsense_Mutation p.R260* 0.26 TCGA-CM-6674-01 5 169507217 169507217 G A DOCK2 Silent p.A1739A 0.20 TCGA-CM-6674-01 5 169532980 169532980 C T FOXI1 Missense_Mutation p.P7S 0.31 tolerated(0.66) benign(0.006) TCGA-CM-6674-01 5 169533175 169533175 C A FOXI1 Missense_Mutation p.P72T 0.19 tolerated(0.68) possibly_damaging(0.521) TCGA-CM-6674-01 5 176797945 176797945 A G RGS14 Silent p.S389S 0.20 TCGA-CM-6674-01 5 177310784 177310784 C T RP11-423H2.1 RNA 0.17 TCGA-CM-6674-01 5 178373426 178373426 G A ZNF454 Missense_Mutation p.A34T 0.18 tolerated(0.12) benign(0.007) TCGA-CM-6674-01 5 24488219 24488219 T - CDH10 Frame_Shift_Del p.E641Sfs*3 0.22 TCGA-CM-6674-01 5 33466994 33466994 G A TARS Missense_Mutation p.D676N 0.21 tolerated(0.12) benign(0.009) TCGA-CM-6674-01 5 35753738 35753738 C T SPEF2 Missense_Mutation p.R1115C 0.27 deleterious(0) probably_damaging(0.996) TCGA-CM-6674-01 5 35867541 35867541 A - IL7R Frame_Shift_Del p.I121* 0.19 TCGA-CM-6674-01 5 36035970 36035970 C T UGT3A2 Missense_Mutation p.A468T 0.28 tolerated(0.06) probably_damaging(0.941) TCGA-CM-6674-01 5 37157908 37157908 A G C5orf42 Silent p.P2607P 0.17 TCGA-CM-6674-01 5 41007480 41007480 C - MROH2B Frame_Shift_Del p.D1229Tfs*15 0.22 TCGA-CM-6674-01 5 422889 422889 G A AHRR Missense_Mutation p.D167N 0.33 deleterious(0) probably_damaging(0.995) TCGA-CM-6674-01 5 43381821 43381821 G A CCL28 3'UTR 0.29 TCGA-CM-6674-01 5 64447732 64447732 C T ADAMTS6 Silent p.V1095V 0.20 TCGA-CM-6674-01 5 65290592 65290592 G A ERBB2IP Silent p.Q69Q 0.26 TCGA-CM-6674-01 5 65370919 65370920 - C ERBB2IP Frame_Shift_Ins p.Q1285Sfs*10 0.20 TCGA-CM-6674-01 5 6632866 6632866 A G NSUN2 Missense_Mutation p.W34R 0.17 tolerated(0.5) unknown(0) TCGA-CM-6674-01 5 67522693 67522693 G - PIK3R1 Frame_Shift_Del p.E65Kfs*10 0.18 TCGA-CM-6674-01 5 72427609 72427609 T - TMEM171 3'UTR 0.12 TCGA-CM-6674-01 5 75896757 75896757 G A IQGAP2 Missense_Mutation p.A398T 0.28 tolerated(0.57) benign(0.001) TCGA-CM-6674-01 5 82940427 82940427 G A HAPLN1 Missense_Mutation p.A177V 0.22 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 5 90136423 90136423 G A GPR98 Missense_Mutation p.R5547H 0.31 possibly_damaging(0.84) TCGA-CM-6674-01 5 9154604 9154604 G A SEMA5A Missense_Mutation p.R493C 0.15 deleterious(0) possibly_damaging(0.893) TCGA-CM-6674-01 5 96129144 96129144 C T ERAP1 Missense_Mutation p.E383K 0.13 deleterious(0) probably_damaging(0.919) TCGA-CM-6674-01 6 105198277 105198277 A - HACE1 Frame_Shift_Del p.L761Yfs*33 0.20 TCGA-CM-6674-01 6 107390783 107390783 T C BEND3 Missense_Mutation p.K538E 0.19 tolerated(0.33) probably_damaging(0.993) TCGA-CM-6674-01 6 10912974 10912974 C T SYCP2L Silent p.V329V 0.23 TCGA-CM-6674-01 6 10990565 10990565 T A ELOVL2 Missense_Mutation p.T206S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CM-6674-01 6 114181691 114181691 C - MARCKS Frame_Shift_Del p.S314Hfs*55 0.12 TCGA-CM-6674-01 6 116574704 116574704 T - TSPYL4 Frame_Shift_Del p.K156Nfs*23 0.16 TCGA-CM-6674-01 6 116818119 116818120 - T TRAPPC3L Frame_Shift_Ins p.*182Mfs*22 0.17 TCGA-CM-6674-01 6 117739650 117739650 C T ROS1 Missense_Mutation p.G48D 0.22 tolerated(0.16) benign(0.063) TCGA-CM-6674-01 6 118887049 118887049 T - CEP85L Frame_Shift_Del p.K224Nfs*32 0.16 TCGA-CM-6674-01 6 127518701 127518701 A G RSPO3 3'Flank 0.21 TCGA-CM-6674-01 6 128134226 128134226 A G THEMIS Silent p.S520S 0.21 TCGA-CM-6674-01 6 128318069 128318069 T G PTPRK Missense_Mutation p.N915T 0.23 deleterious(0.03) probably_damaging(0.994) TCGA-CM-6674-01 6 139266438 139266438 G A REPS1 Silent p.S182S 0.26 TCGA-CM-6674-01 6 139564338 139564338 G A TXLNB Silent p.D460D 0.20 TCGA-CM-6674-01 6 144507937 144507937 T G STX11 Missense_Mutation p.L58R 0.63 deleterious(0) probably_damaging(0.996) TCGA-CM-6674-01 6 144878369 144878369 A G UTRN Missense_Mutation p.E2404G 0.09 deleterious(0.02) benign(0.119) TCGA-CM-6674-01 6 146755288 146755288 C T GRM1 Missense_Mutation p.R981C 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.586) TCGA-CM-6674-01 6 148854016 148854016 C T SASH1 Missense_Mutation p.P550S 0.31 tolerated(0.06) possibly_damaging(0.674) TCGA-CM-6674-01 6 154412483 154412483 G A OPRM1 Missense_Mutation p.R440Q 0.27 tolerated(0.11) probably_damaging(0.996) TCGA-CM-6674-01 6 155575663 155575663 G A TIAM2 Missense_Mutation p.R1475H 0.13 tolerated(0.07) benign(0.176) TCGA-CM-6674-01 6 155577955 155577955 C T TIAM2 Silent p.D1602D 0.27 TCGA-CM-6674-01 6 157192750 157192751 CT - ARID1B Frame_Shift_Del p.S581Wfs*71 0.22 TCGA-CM-6674-01 6 157527742 157527742 G T ARID1B Missense_Mutation p.G1823W 0.19 probably_damaging(1) TCGA-CM-6674-01 6 157739843 157739843 C T TMEM242 Missense_Mutation p.A100T 0.23 tolerated(0.12) benign(0.081) TCGA-CM-6674-01 6 159208153 159208153 T A EZR Missense_Mutation p.K60M 0.17 deleterious(0) probably_damaging(0.986) TCGA-CM-6674-01 6 160199848 160199848 T C ACAT2 Missense_Mutation p.V394A 0.08 deleterious(0.01) probably_damaging(0.956) TCGA-CM-6674-01 6 160206518 160206518 G A TCP1 Missense_Mutation p.R130C 0.22 deleterious(0.02) benign(0.027) TCGA-CM-6674-01 6 16327835 16327835 G A ATXN1 Missense_Mutation p.P236L 0.25 deleterious(0.02) benign(0.116) TCGA-CM-6674-01 6 163987701 163987701 C - QKI Intron 0.18 TCGA-CM-6674-01 6 168352856 168352856 C T MLLT4 Nonsense_Mutation p.R1601* 0.17 TCGA-CM-6674-01 6 168370617 168370617 A G MLLT4 3'UTR 0.11 TCGA-CM-6674-01 6 170105213 170105213 T - C6orf120 3'UTR 0.20 TCGA-CM-6674-01 6 21595096 21595096 G C SOX4 Missense_Mutation p.E111Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 6 26018017 26018017 A - HIST1H1A 5'UTR 0.14 TCGA-CM-6674-01 6 29591192 29591192 G A GABBR1 Nonsense_Mutation p.R285* 0.28 TCGA-CM-6674-01 6 30229147 30229147 C T HCG17 Intron 0.22 TCGA-CM-6674-01 6 30569746 30569746 G A PPP1R10 Nonsense_Mutation p.R894* 0.24 TCGA-CM-6674-01 6 31698678 31698678 A G CLIC1 Missense_Mutation p.C223R 0.26 deleterious(0) possibly_damaging(0.865) TCGA-CM-6674-01 6 31860315 31860315 G A EHMT2 Missense_Mutation p.R245C 0.22 deleterious_low_confidence(0.03) benign(0.002) TCGA-CM-6674-01 6 31935073 31935073 C T SKIV2L Silent p.N834N 0.33 TCGA-CM-6674-01 6 32030123 32030123 C T TNXB Missense_Mutation p.E2327K 0.17 benign(0.173) TCGA-CM-6674-01 6 32800560 32800560 C - TAP2 Frame_Shift_Del p.Q330Rfs*50 0.29 TCGA-CM-6674-01 6 32803418 32803418 A G TAP2 Splice_Site p.X247_splice 0.25 TCGA-CM-6674-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.15 TCGA-CM-6674-01 6 36198554 36198554 A G BRPF3 3'UTR 0.40 TCGA-CM-6674-01 6 38890848 38890848 C T DNAH8 Silent p.D3342D 0.24 TCGA-CM-6674-01 6 4032076 4032076 T G PRPF4B Missense_Mutation p.L109V 0.22 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-CM-6674-01 6 41470679 41470679 G T RP11-328M4.3 RNA 0.23 TCGA-CM-6674-01 6 41771694 41771694 G T USP49 Missense_Mutation p.L471I 0.35 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 6 42974321 42974321 G - PPP2R5D Frame_Shift_Del p.Q79Rfs*28 0.19 TCGA-CM-6674-01 6 43184211 43184212 CT - CUL9 Frame_Shift_Del p.C2087Lfs*7 0.13 TCGA-CM-6674-01 6 43399705 43399705 G A ABCC10 Intron 0.26 TCGA-CM-6674-01 6 44268274 44268274 C T AARS2 3'UTR 0.24 TCGA-CM-6674-01 6 44922303 44922303 T G SUPT3H Missense_Mutation p.S219R 0.21 deleterious(0.01) possibly_damaging(0.823) TCGA-CM-6674-01 6 44988299 44988299 A - SUPT3H Frame_Shift_Del p.L97* 0.17 TCGA-CM-6674-01 6 49519649 49519649 G - C6orf141 3'UTR 0.20 TCGA-CM-6674-01 6 51619697 51619697 G A PKHD1 Silent p.D2894D 0.22 TCGA-CM-6674-01 6 53764582 53764582 T A LRRC1 Missense_Mutation p.V227D 0.15 deleterious(0) probably_damaging(0.912) TCGA-CM-6674-01 6 56468731 56468731 A G DST Intron 0.13 TCGA-CM-6674-01 6 56490035 56490035 G T DST Silent p.R1047R 0.27 TCGA-CM-6674-01 6 7374241 7374241 C T CAGE1 Missense_Mutation p.A271T 0.21 tolerated(0.18) probably_damaging(0.981) TCGA-CM-6674-01 6 75825501 75825501 C T COL12A1 Missense_Mutation p.A2566T 0.25 benign(0.011) TCGA-CM-6674-01 6 75841784 75841784 C T COL12A1 Missense_Mutation p.A1937T 0.12 benign(0.213) TCGA-CM-6674-01 6 7602924 7602924 C T SNRNP48 Missense_Mutation p.R222C 0.28 deleterious(0) probably_damaging(0.996) TCGA-CM-6674-01 6 83845479 83845479 A - DOPEY1 Frame_Shift_Del p.T1006Lfs*39 0.20 TCGA-CM-6674-01 6 85466416 85466416 A G TBX18 Silent p.H257H 0.12 TCGA-CM-6674-01 6 87725275 87725275 G A HTR1E Missense_Mutation p.V75I 0.22 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 6 89793677 89793677 A - PNRC1 Frame_Shift_Del p.K251Sfs*14 0.18 TCGA-CM-6674-01 7 100279233 100279233 C T GIGYF1 3'UTR 0.33 TCGA-CM-6674-01 7 100283942 100283942 C - GIGYF1 Frame_Shift_Del p.G270Efs*75 0.28 TCGA-CM-6674-01 7 100676253 100676253 G A MUC17 Missense_Mutation p.S519N 0.36 possibly_damaging(0.608) TCGA-CM-6674-01 7 102949503 102949503 G A PMPCB Silent p.T318T 0.22 TCGA-CM-6674-01 7 103155841 103155841 C T RELN Missense_Mutation p.R2637H 0.20 deleterious(0.03) probably_damaging(0.994) TCGA-CM-6674-01 7 105645052 105645052 G A CDHR3 Missense_Mutation p.G324D 0.16 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 7 11676167 11676167 G A THSD7A Silent p.S204S 0.17 TCGA-CM-6674-01 7 117386122 117386122 C T CTTNBP2 Missense_Mutation p.G1127D 0.22 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 7 127670753 127670753 C T LRRC4 5'UTR 0.38 TCGA-CM-6674-01 7 128446360 128446360 G A CCDC136 Missense_Mutation p.E387K 0.28 tolerated(0.05) probably_damaging(0.964) TCGA-CM-6674-01 7 128494939 128494939 G A FLNC Missense_Mutation p.G2370S 0.22 tolerated(0.18) probably_damaging(0.988) TCGA-CM-6674-01 7 129096388 129096388 C T STRIP2 Missense_Mutation p.R315C 0.12 deleterious(0) probably_damaging(0.988) TCGA-CM-6674-01 7 129666089 129666089 T A ZC3HC1 Missense_Mutation p.T229S 0.21 tolerated(0.18) benign(0.005) TCGA-CM-6674-01 7 138601603 138601603 G A KIAA1549 Silent p.P923P 0.17 TCGA-CM-6674-01 7 14028346 14028346 T C ETV1 Intron 0.26 TCGA-CM-6674-01 7 142563773 142563773 A G EPHB6 Silent p.L387L 0.32 TCGA-CM-6674-01 7 143095849 143095849 G A EPHA1 Missense_Mutation p.P394L 0.29 deleterious(0) probably_damaging(0.912) TCGA-CM-6674-01 7 150491090 150491090 C T TMEM176B Missense_Mutation p.V92M 0.21 tolerated(0.07) benign(0.079) TCGA-CM-6674-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.23 TCGA-CM-6674-01 7 150707990 150707990 G A NOS3 Missense_Mutation p.G967E 0.24 deleterious(0.01) benign(0.426) TCGA-CM-6674-01 7 151878070 151878070 G - KMT2C Frame_Shift_Del p.P2292Hfs*13 0.20 TCGA-CM-6674-01 7 151884426 151884426 C A KMT2C Missense_Mutation p.E1643D 0.20 probably_damaging(0.997) TCGA-CM-6674-01 7 154461140 154461140 G T DPP6 Missense_Mutation p.G251C 0.20 deleterious(0) probably_damaging(0.998) TCGA-CM-6674-01 7 154768017 154768017 G A PAXIP1 Nonsense_Mutation p.R155* 0.26 TCGA-CM-6674-01 7 19156417 19156417 G A TWIST1 Silent p.S176S 0.33 TCGA-CM-6674-01 7 2966419 2966419 G A CARD11 Silent p.V587V 0.17 TCGA-CM-6674-01 7 4247800 4247800 G - SDK1 Frame_Shift_Del p.V1762Wfs*2 0.26 TCGA-CM-6674-01 7 44806214 44806214 G C ZMIZ2 Silent p.G869G 0.32 TCGA-CM-6674-01 7 4825256 4825256 G A AP5Z1 Missense_Mutation p.R358H 0.28 tolerated(0.06) benign(0.027) TCGA-CM-6674-01 7 4949645 4949645 C T MMD2 Missense_Mutation p.S159N 0.33 tolerated_low_confidence(0.46) benign(0.02) TCGA-CM-6674-01 7 5540270 5540270 C T FBXL18 Missense_Mutation p.V544I 0.23 tolerated(0.77) benign(0.001) TCGA-CM-6674-01 7 5967781 5967782 AG - RSPH10B Intron 0.09 TCGA-CM-6674-01 7 6196400 6196400 A G USP42 Silent p.S1219S 0.14 TCGA-CM-6674-01 7 6196638 6196638 C T USP42 Missense_Mutation p.R1299W 0.20 tolerated(0.05) possibly_damaging(0.8) TCGA-CM-6674-01 7 6547884 6547884 G A GRID2IP Missense_Mutation p.P759L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-CM-6674-01 7 66274162 66274162 A G KCTD7 Missense_Mutation p.Y456C 0.08 tolerated(0.07) benign(0.005) TCGA-CM-6674-01 7 73117195 73117195 C T STX1A Missense_Mutation p.A220T 0.22 deleterious(0) probably_damaging(1) TCGA-CM-6674-01 7 75051028 75051028 G A POM121C Missense_Mutation p.T836M 0.15 tolerated(0.05) probably_damaging(0.996) TCGA-CM-6674-01 7 75051094 75051094 G A POM121C Missense_Mutation p.T814I 0.18 tolerated(0.08) benign(0.017) TCGA-CM-6674-01 7 75051223 75051223 G A POM121C Missense_Mutation p.T771M 0.19 deleterious(0.02) benign(0.023) TCGA-CM-6674-01 7 75915184 75915184 C - SRRM3 3'UTR 0.22 TCGA-CM-6674-01 7 82582762 82582762 G C PCLO Missense_Mutation p.P2503A 0.10 unknown(0) TCGA-CM-6674-01 7 91864911 91864911 G A KRIT1 Nonsense_Mutation p.R179* 0.30 TCGA-CM-6674-01 7 97846766 97846767 - G TECPR1 Frame_Shift_Ins p.R1145Pfs*76 0.27 TCGA-CM-6674-01 7 98254351 98254351 T C NPTX2 Missense_Mutation p.L254P 0.35 deleterious(0) probably_damaging(0.968) TCGA-CM-6674-01 7 98931040 98931040 C T ARPC1A Nonsense_Mutation p.Q22* 0.27 TCGA-CM-6674-01 8 100443770 100443770 C T VPS13B Missense_Mutation p.R1030C 0.23 deleterious(0) probably_damaging(0.973) TCGA-CM-6674-01 8 100523648 100523648 T C VPS13B Missense_Mutation p.L1539P 0.26 deleterious(0) probably_damaging(0.979) TCGA-CM-6674-01 8 103563928 103563928 A G ODF1 5'UTR 0.13 TCGA-CM-6674-01 8 10480521 10480521 A G RP1L1 Missense_Mutation p.L64P 0.28 probably_damaging(1) TCGA-CM-6674-01 8 104831793 104831793 G T RIMS2 Intron 0.30 TCGA-CM-6674-01 8 105509256 105509256 G A LRP12 Silent p.L508L 0.27 TCGA-CM-6674-01 8 113293437 113293437 A T CSMD3 Missense_Mutation p.N3158K 0.26 deleterious(0) possibly_damaging(0.515) TCGA-CM-6674-01 8 113299314 113299314 C T CSMD3 Missense_Mutation p.G3104R 0.32 deleterious(0.02) possibly_damaging(0.745) TCGA-CM-6674-01 8 116616497 116616497 G A TRPS1 Missense_Mutation p.H567Y 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CM-6674-01 8 120942146 120942146 G T DEPTOR Missense_Mutation p.K131N 0.25 deleterious(0.04) probably_damaging(0.938) TCGA-CM-6674-01 8 121357674 121357674 G A COL14A1 Missense_Mutation p.R1650Q 0.18 deleterious(0.03) probably_damaging(0.992) TCGA-CM-6674-01 8 124369935 124369936 AG - ATAD2 Frame_Shift_Del p.L475Gfs*8 0.24 TCGA-CM-6674-01 8 133051322 133051322 G A OC90 Missense_Mutation p.A169V 0.35 tolerated(0.06) probably_damaging(0.986) TCGA-CM-6674-01 8 133881982 133881982 A G TG Missense_Mutation p.Q62R 0.15 deleterious(0) probably_damaging(0.974) TCGA-CM-6674-01 8 141381188 141381188 C T TRAPPC9 Missense_Mutation p.R507H 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-CM-6674-01 8 143562922 143562922 G T BAI1 Missense_Mutation p.E660D 0.28 tolerated(0.63) possibly_damaging(0.523) TCGA-CM-6674-01 8 143831671 143831671 C T LYPD2 3'UTR 0.29 TCGA-CM-6674-01 8 144358451 144358451 G A GLI4 Missense_Mutation p.R203H 0.29 deleterious(0) probably_damaging(0.981) TCGA-CM-6674-01 8 144520202 144520202 G T ZC3H3 3'UTR 0.28 TCGA-CM-6674-01 8 144808601 144808601 C A FAM83H Silent p.T1010T 0.24 TCGA-CM-6674-01 8 2000384 2000384 G A MYOM2 Silent p.A72A 0.28 TCGA-CM-6674-01 8 2044115 2044115 G A MYOM2 Silent p.T718T 0.18 TCGA-CM-6674-01 8 21846539 21846539 C T XPO7 Missense_Mutation p.R605C 0.27 deleterious(0.03) benign(0.339) TCGA-CM-6674-01 8 22006444 22006444 C T LGI3 Silent p.L292L 0.17 TCGA-CM-6674-01 8 22064898 22064898 C - BMP1 Frame_Shift_Del p.V817Sfs*52 0.28 TCGA-CM-6674-01 8 22106744 22106744 C A POLR3D Silent p.T281T 0.28 TCGA-CM-6674-01 8 22487477 22487477 T - BIN3 Frame_Shift_Del p.K113Sfs*13 0.20 TCGA-CM-6674-01 8 25209258 25209258 G A DOCK5 Silent p.A922A 0.20 TCGA-CM-6674-01 8 25290090 25290090 G A KCTD9 Missense_Mutation p.A328V 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 8 27321036 27321036 G A CHRNA2 Silent p.T308T 0.30 TCGA-CM-6674-01 8 30701810 30701810 G A TEX15 Missense_Mutation p.T1575M 0.30 tolerated(0.49) benign(0.001) TCGA-CM-6674-01 8 30705320 30705320 A G TEX15 Missense_Mutation p.I405T 0.17 tolerated(0.16) benign(0.037) TCGA-CM-6674-01 8 39771450 39771450 C T IDO1 Silent p.H3H 0.15 TCGA-CM-6674-01 8 43216288 43216288 C T POTEA RNA 0.62 TCGA-CM-6674-01 8 48840346 48840346 G A PRKDC Silent p.Y748Y 0.17 TCGA-CM-6674-01 8 54960501 54960501 G A LYPLA1 3'UTR 0.40 TCGA-CM-6674-01 8 66637142 66637142 G A PDE7A Missense_Mutation p.T312I 0.10 tolerated(0.13) benign(0.032) TCGA-CM-6674-01 8 68087800 68087800 C T CSPP1 Intron 0.29 TCGA-CM-6674-01 8 87464805 87464805 G A WWP1 Missense_Mutation p.R764H 0.28 deleterious(0.01) benign(0.398) TCGA-CM-6674-01 8 87491199 87491201 TTC - RMDN1 In_Frame_Del p.R227del 0.10 TCGA-CM-6674-01 8 98736901 98736901 T - MTDH 3'UTR 0.26 TCGA-CM-6674-01 8 99440735 99440735 G A KCNS2 Silent p.A176A 0.27 TCGA-CM-6674-01 9 100367091 100367092 CT - TSTD2 Frame_Shift_Del p.E390Vfs*3 0.20 TCGA-CM-6674-01 9 101552603 101552603 C T ANKS6 Silent p.A215A 0.26 TCGA-CM-6674-01 9 102988354 102988354 G A INVS Missense_Mutation p.R95H 0.18 deleterious(0) probably_damaging(0.985) TCGA-CM-6674-01 9 104357035 104357035 G A PPP3R2 Nonsense_Mutation p.R60* 0.25 TCGA-CM-6674-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.22 TCGA-CM-6674-01 9 111631301 111631301 C G IKBKAP 3'UTR 0.20 TCGA-CM-6674-01 9 112899528 112899528 G A PALM2-AKAP2 Silent p.R568R 0.23 TCGA-CM-6674-01 9 114919788 114919788 T C SUSD1 Missense_Mutation p.Q70R 0.29 tolerated(0.24) benign(0.002) TCGA-CM-6674-01 9 116840459 116840459 G A AMBP Silent p.L11L 0.36 TCGA-CM-6674-01 9 117827066 117827066 G A TNC Missense_Mutation p.A1116V 0.16 tolerated(0.24) benign(0.019) TCGA-CM-6674-01 9 119065092 119065093 - A PAPPA Frame_Shift_Ins p.T1006Nfs*4 0.22 TCGA-CM-6674-01 9 123253708 123253711 TCTT - CDK5RAP2 Frame_Shift_Del p.E454Kfs*11 0.17 TCGA-CM-6674-01 9 123789518 123789518 C T C5 Missense_Mutation p.V265I 0.15 tolerated(0.09) possibly_damaging(0.754) TCGA-CM-6674-01 9 123904453 123904453 A G CNTRL Missense_Mutation p.M926V 0.17 probably_damaging(0.989) TCGA-CM-6674-01 9 125616529 125616529 T C RC3H2 Missense_Mutation p.T973A 0.26 tolerated(0.49) benign(0.004) TCGA-CM-6674-01 9 127119027 127119027 C T PSMB7 Intron 0.26 TCGA-CM-6674-01 9 129598083 129598083 A G ZBTB43 3'UTR 0.31 TCGA-CM-6674-01 9 130279289 130279289 C T FAM129B Missense_Mutation p.A274T 0.27 tolerated(0.06) benign(0.11) TCGA-CM-6674-01 9 130475336 130475336 C T C9orf117 Silent p.L448L 0.21 TCGA-CM-6674-01 9 130829075 130829075 G A NAIF1 Silent p.D102D 0.41 TCGA-CM-6674-01 9 131117409 131117409 G A SLC27A4 Missense_Mutation p.A468T 0.21 deleterious(0.01) benign(0.113) TCGA-CM-6674-01 9 131456206 131456206 G A SET Missense_Mutation p.G245E 0.25 tolerated(0.42) unknown(0) TCGA-CM-6674-01 9 131512896 131512896 G A ZER1 Missense_Mutation p.T453M 0.37 deleterious(0) possibly_damaging(0.714) TCGA-CM-6674-01 9 131604977 131604977 C T CCBL1 Missense_Mutation p.A53T 0.19 deleterious(0.03) possibly_damaging(0.762) TCGA-CM-6674-01 9 131607695 131607695 A G CCBL1 Intron 0.35 TCGA-CM-6674-01 9 131857867 131857867 T C CRAT Missense_Mutation p.M564V 0.42 deleterious(0.01) possibly_damaging(0.52) TCGA-CM-6674-01 9 132687308 132687308 T G FNBP1 Missense_Mutation p.E306D 0.25 tolerated(0.59) benign(0) TCGA-CM-6674-01 9 133750319 133750319 C T ABL1 Silent p.L403L 0.18 TCGA-CM-6674-01 9 134340288 134340288 C T PRRC2B Missense_Mutation p.R515C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CM-6674-01 9 134454900 134454900 C T RAPGEF1 Missense_Mutation p.R1091Q 0.18 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CM-6674-01 9 136131634 136131634 C T RP11-430N14.4 5'Flank 0.32 TCGA-CM-6674-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.19 TCGA-CM-6674-01 9 138379639 138379640 - G PPP1R26 Frame_Shift_Ins p.R1098Qfs*60 0.33 TCGA-CM-6674-01 9 138903689 138903689 G A NACC2 Silent p.L479L 0.24 TCGA-CM-6674-01 9 139390736 139390736 G - NOTCH1 Frame_Shift_Del p.S2486Rfs*103 0.19 TCGA-CM-6674-01 9 139747622 139747622 G A MAMDC4 Missense_Mutation p.V39M 0.24 deleterious(0) possibly_damaging(0.857) TCGA-CM-6674-01 9 139749113 139749113 C T MAMDC4 Missense_Mutation p.R307W 0.22 tolerated(0.12) benign(0.009) TCGA-CM-6674-01 9 139925152 139925152 C T FUT7 3'UTR 0.29 TCGA-CM-6674-01 9 139972785 139972785 C A UAP1L1 Intron 0.29 TCGA-CM-6674-01 9 16436658 16436658 G A BNC2 Missense_Mutation p.R512W 0.26 deleterious(0) probably_damaging(0.979) TCGA-CM-6674-01 9 19058779 19058779 G A HAUS6 Silent p.C662C 0.24 TCGA-CM-6674-01 9 2811476 2811476 G A KIAA0020 Missense_Mutation p.A507V 0.17 tolerated(0.11) benign(0.013) TCGA-CM-6674-01 9 2820092 2820092 A G KIAA0020 Missense_Mutation p.Y399H 0.10 tolerated(0.1) benign(0.024) TCGA-CM-6674-01 9 32436388 32436388 G A ACO1 Missense_Mutation p.G747E 0.29 deleterious(0.04) benign(0.116) TCGA-CM-6674-01 9 32786892 32786892 G T TMEM215 3'UTR 0.28 TCGA-CM-6674-01 9 35547135 35547135 G T RUSC2 Missense_Mutation p.G206V 0.26 tolerated(0.06) possibly_damaging(0.619) TCGA-CM-6674-01 9 6498129 6498129 C T UHRF2 Missense_Mutation p.R627W 0.19 deleterious(0) probably_damaging(0.991) TCGA-CM-6674-01 9 71628571 71628571 G T PRKACG Missense_Mutation p.F146L 0.25 deleterious(0) possibly_damaging(0.899) TCGA-CM-6674-01 9 80919805 80919805 A G PSAT1 Missense_Mutation p.K116E 0.23 tolerated(0.56) benign(0.004) TCGA-CM-6674-01 9 87636396 87636396 C T NTRK2 3'UTR 0.30 TCGA-CM-6674-01 9 90219979 90219979 G A DAPK1 Missense_Mutation p.R58H 0.27 deleterious(0.01) possibly_damaging(0.838) TCGA-CM-6674-01 9 94486652 94486652 C T ROR2 Silent p.R708R 0.38 TCGA-CM-6674-01 9 95410369 95410369 C T IPPK Missense_Mutation p.C159Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-CM-6674-01 9 95475751 95475751 C T BICD2 3'UTR 0.24 TCGA-CM-6674-01 9 95618556 95618556 A G ZNF484 Silent p.D22D 0.29 TCGA-CM-6674-01 9 99417020 99417020 C A AAED1 Missense_Mutation p.E76D 0.25 tolerated(0.15) benign(0.06) TCGA-CM-6674-01 X 104993071 104993072 - T IL1RAPL2 Frame_Shift_Ins p.G391Wfs*3 0.32 TCGA-CM-6674-01 X 109298623 109298623 G A TMEM164 Intron 0.47 TCGA-CM-6674-01 X 110644519 110644519 T - DCX Frame_Shift_Del p.K216Rfs*16 0.41 TCGA-CM-6674-01 X 117527155 117527155 T G WDR44 Silent p.P249P 0.41 TCGA-CM-6674-01 X 118109243 118109244 - C LONRF3 Frame_Shift_Ins p.V169Rfs*11 0.34 TCGA-CM-6674-01 X 118724027 118724027 G A NKRF Missense_Mutation p.T469M 0.43 tolerated(0.06) probably_damaging(0.987) TCGA-CM-6674-01 X 123554389 123554389 G A TENM1 Missense_Mutation p.A1585V 0.50 tolerated(0.15) benign(0.07) TCGA-CM-6674-01 X 123556299 123556299 G A TENM1 Silent p.L1432L 0.54 TCGA-CM-6674-01 X 12735798 12735798 C T FRMPD4 Silent p.T951T 0.60 TCGA-CM-6674-01 X 129146583 129146583 C T BCORL1 Missense_Mutation p.T39M 0.58 unknown(0) TCGA-CM-6674-01 X 134125536 134125536 A - SMIM10 3'UTR 0.30 TCGA-CM-6674-01 X 134683608 134683608 G A DDX26B Missense_Mutation p.A262T 0.45 tolerated(0.57) benign(0.034) TCGA-CM-6674-01 X 151935885 151935885 C T MAGEA3 Silent p.G94G 0.54 TCGA-CM-6674-01 X 153008685 153008685 G A ABCD1 Missense_Mutation p.A626T 0.50 deleterious(0) probably_damaging(0.992) TCGA-CM-6674-01 X 153178222 153178222 G A ARHGAP4 Missense_Mutation p.R532C 0.49 deleterious(0.01) possibly_damaging(0.841) TCGA-CM-6674-01 X 153761844 153761844 C T G6PD Missense_Mutation p.V301M 0.51 deleterious(0.01) possibly_damaging(0.75) TCGA-CM-6674-01 X 18961883 18961883 T C PHKA2 Missense_Mutation p.H221R 0.57 tolerated(0.81) benign(0.01) TCGA-CM-6674-01 X 22291624 22291624 A C ZNF645 Missense_Mutation p.Q172H 0.55 tolerated(0.26) benign(0.065) TCGA-CM-6674-01 X 41333734 41333734 G A NYX Missense_Mutation p.R343H 0.57 tolerated(0.31) benign(0.001) TCGA-CM-6674-01 X 46466377 46466377 G - SLC9A7 3'UTR 0.48 TCGA-CM-6674-01 X 47422384 47422384 C - ARAF Frame_Shift_Del p.P8Lfs*26 0.48 TCGA-CM-6674-01 X 51151470 51151470 G C CXorf67 3'UTR 0.24 TCGA-CM-6674-01 X 53587174 53587174 G A HUWE1 Missense_Mutation p.P2571S 0.48 possibly_damaging(0.641) TCGA-CM-6674-01 X 69489740 69489740 G A ARR3 Silent p.T29T 0.17 TCGA-CM-6674-01 X 70598858 70598858 C T TAF1 Missense_Mutation p.A466V 0.52 tolerated(0.06) probably_damaging(0.974) TCGA-CM-6674-01 X 77289278 77289278 C T ATP7A Missense_Mutation p.S1157L 0.56 tolerated(0.31) benign(0.095) TCGA-CM-6674-01 X 78618556 78618557 - A ITM2A Frame_Shift_Ins p.L109Pfs*5 0.29 TCGA-CM-6674-01 Y 2848036 2848036 A G ZFY 3'UTR 0.41 TCGA-CM-6675-01 10 108337217 108337217 C A SORCS1 Intron 0.45 TCGA-CM-6675-01 10 124390006 124390006 G A DMBT1 Missense_Mutation p.D1880N 0.38 tolerated(0.24) probably_damaging(0.983) TCGA-CM-6675-01 10 16883043 16883043 A G CUBN Missense_Mutation p.Y3223H 0.33 tolerated(0.08) probably_damaging(0.987) TCGA-CM-6675-01 10 21807218 21807218 A C SKIDA1 5'UTR 0.28 TCGA-CM-6675-01 10 98064310 98064310 C T DNTT Missense_Mutation p.T19M 0.74 tolerated(0.21) benign(0.007) TCGA-CM-6675-01 11 105732907 105732908 AG - GRIA4 Frame_Shift_Del p.R217Tfs*16 0.40 TCGA-CM-6675-01 11 109295786 109295786 A G C11orf87 3'UTR 0.59 TCGA-CM-6675-01 11 111749872 111749872 C A FDXACB1 5'UTR 0.33 TCGA-CM-6675-01 11 114168773 114168773 C T NNMT Silent p.D85D 0.07 TCGA-CM-6675-01 11 16776639 16776639 C T C11orf58 Silent p.S180S 0.55 TCGA-CM-6675-01 11 46747680 46747680 C T F2 Silent p.A277A 0.46 TCGA-CM-6675-01 11 49175902 49175902 T C FOLH1 Missense_Mutation p.N589S 0.42 deleterious(0.02) benign(0.002) TCGA-CM-6675-01 11 57563201 57563201 G A CTNND1 Silent p.T140T 0.72 TCGA-CM-6675-01 11 60687325 60687325 T C TMEM109 Silent p.L54L 0.13 TCGA-CM-6675-01 11 64121590 64121590 G T CCDC88B Silent p.L1349L 0.44 TCGA-CM-6675-01 11 69625066 69625066 G A FGF3 3'UTR 0.42 TCGA-CM-6675-01 12 112888189 112888189 G A PTPN11 Missense_Mutation p.E69K 0.76 deleterious(0) benign(0.203) TCGA-CM-6675-01 12 113758899 113758899 G C SLC8B1 Silent p.L108L 0.69 TCGA-CM-6675-01 12 122439447 122439447 C G WDR66 Missense_Mutation p.L1094V 0.08 deleterious(0) possibly_damaging(0.589) TCGA-CM-6675-01 12 50368180 50368180 T C AQP6 Missense_Mutation p.V159A 0.09 deleterious(0) possibly_damaging(0.553) TCGA-CM-6675-01 12 52946438 52946438 C T KRT71 Missense_Mutation p.A142T 0.25 deleterious(0) probably_damaging(1) TCGA-CM-6675-01 12 53680452 53680453 AG - ESPL1 Frame_Shift_Del p.Q1311Rfs*21 0.44 TCGA-CM-6675-01 12 549781 549781 A C CCDC77 Splice_Site p.X348_splice 0.09 TCGA-CM-6675-01 12 55420513 55420513 G A NEUROD4 Missense_Mutation p.R97Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-CM-6675-01 12 93968801 93968801 T C SOCS2 Missense_Mutation p.V148A 0.09 deleterious(0) benign(0.268) TCGA-CM-6675-01 13 103443642 103443642 C T KDELC1 Missense_Mutation p.D271N 0.44 deleterious(0) probably_damaging(1) TCGA-CM-6675-01 13 26978103 26978103 C T CDK8 Missense_Mutation p.P427L 0.50 tolerated_low_confidence(0.08) benign(0.083) TCGA-CM-6675-01 14 69521705 69521705 G T DCAF5 Missense_Mutation p.S566R 0.41 deleterious_low_confidence(0) benign(0.162) TCGA-CM-6675-01 14 93760291 93760291 C A BTBD7 Missense_Mutation p.A359S 0.68 tolerated(0.65) benign(0.081) TCGA-CM-6675-01 15 65208028 65208028 G A ANKDD1A Missense_Mutation p.A23T 0.33 deleterious(0.01) possibly_damaging(0.639) TCGA-CM-6675-01 15 76646388 76646388 G A SCAPER Silent p.L1317L 0.41 TCGA-CM-6675-01 15 82335892 82335892 C T MEX3B Missense_Mutation p.R440H 0.42 deleterious(0.03) benign(0.375) TCGA-CM-6675-01 15 87531266 87531267 - T AGBL1 Frame_Shift_Ins p.A1047Cfs*19 0.33 TCGA-CM-6675-01 15 93524079 93524080 - T CHD2 Frame_Shift_Ins p.L972Ffs*26 0.34 TCGA-CM-6675-01 16 2161042 2161042 C T PKD1 Missense_Mutation p.V1376M 0.54 probably_damaging(1) TCGA-CM-6675-01 16 31283280 31283280 G A ITGAM Missense_Mutation p.R224Q 0.47 tolerated(0.36) benign(0.045) TCGA-CM-6675-01 16 32890833 32890833 G A SLC6A10P RNA 0.13 TCGA-CM-6675-01 16 67572637 67572637 C T FAM65A Missense_Mutation p.S76F 0.14 tolerated(0.06) probably_damaging(0.973) TCGA-CM-6675-01 16 72094633 72094633 G A HP Silent p.A355A 0.25 TCGA-CM-6675-01 16 75200703 75200703 T C ZFP1 Silent p.F17F 0.35 TCGA-CM-6675-01 17 1638901 1638901 C T WDR81 Missense_Mutation p.R1739W 0.89 deleterious(0) probably_damaging(0.963) TCGA-CM-6675-01 17 47075102 47075102 G A IGF2BP1 5'UTR 0.22 TCGA-CM-6675-01 17 56329724 56329724 G A LPO Missense_Mutation p.R321H 0.25 deleterious(0) probably_damaging(0.979) TCGA-CM-6675-01 17 72436959 72436959 G T GPRC5C Silent p.P393P 0.35 TCGA-CM-6675-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.71 TCGA-CM-6675-01 17 80333070 80333070 G A UTS2R Silent p.P290P 0.42 TCGA-CM-6675-01 18 44068986 44068986 G A LOXHD1 Missense_Mutation p.R889C 0.81 deleterious(0) probably_damaging(0.999) TCGA-CM-6675-01 19 1083143 1083143 A G HMHA1 Missense_Mutation p.I932V 0.47 tolerated(0.69) benign(0.035) TCGA-CM-6675-01 19 12542646 12542646 C G ZNF443 Missense_Mutation p.G114R 0.45 tolerated(0.47) possibly_damaging(0.714) TCGA-CM-6675-01 19 14552079 14552079 A C PKN1 Missense_Mutation p.E55A 0.27 deleterious(0) probably_damaging(0.997) TCGA-CM-6675-01 19 36106141 36106141 A G HAUS5 Missense_Mutation p.E113G 0.13 deleterious(0.03) possibly_damaging(0.713) TCGA-CM-6675-01 19 38380724 38380724 T C WDR87 Missense_Mutation p.E1157G 0.06 benign(0.052) TCGA-CM-6675-01 19 38610014 38610014 G A SIPA1L3 Missense_Mutation p.R787H 0.34 deleterious(0.04) benign(0.103) TCGA-CM-6675-01 19 40374061 40374061 T A FCGBP Missense_Mutation p.N4006I 0.20 possibly_damaging(0.904) TCGA-CM-6675-01 19 42342195 42342195 G A LYPD4 Missense_Mutation p.L118F 0.40 deleterious(0.01) possibly_damaging(0.845) TCGA-CM-6675-01 19 44039551 44039551 C T ZNF575 Silent p.P150P 0.52 TCGA-CM-6675-01 19 49547427 49547427 G T CGB5 5'UTR 0.42 TCGA-CM-6675-01 19 5215558 5215558 G A PTPRS Missense_Mutation p.T1382M 0.35 deleterious(0.03) benign(0.214) TCGA-CM-6675-01 19 57336079 57336079 C T PEG3 5'UTR 0.46 TCGA-CM-6675-01 19 58437532 58437532 T G ZNF418 Missense_Mutation p.S673R 0.32 tolerated(1) benign(0.018) TCGA-CM-6675-01 19 58629719 58629719 C T ZSCAN18 Silent p.A15A 0.33 TCGA-CM-6675-01 19 8613157 8613157 G A MYO1F Silent p.I382I 0.35 TCGA-CM-6675-01 1 1607021 1607021 G A SLC35E2B Missense_Mutation p.T156I 0.24 deleterious(0) probably_damaging(0.993) TCGA-CM-6675-01 1 216538320 216538320 A T USH2A Silent p.T253T 0.43 TCGA-CM-6675-01 1 32257960 32257960 T G SPOCD1 Missense_Mutation p.T940P 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-CM-6675-01 1 3662494 3662494 G A TP73-AS1 RNA 0.58 TCGA-CM-6675-01 1 93602654 93602654 T A MTF2 3'UTR 0.36 TCGA-CM-6675-01 20 30070171 30070171 T C REM1 Missense_Mutation p.F169L 0.10 deleterious(0) probably_damaging(0.992) TCGA-CM-6675-01 20 57430298 57430298 C T GNAS Missense_Mutation p.R660C 0.37 deleterious(0) probably_damaging(0.98) TCGA-CM-6675-01 21 33717052 33717052 C T URB1 Missense_Mutation p.D1362N 0.47 deleterious(0.02) probably_damaging(0.932) TCGA-CM-6675-01 22 22906235 22906235 C T LL22NC03-63E9.3 3'UTR 0.43 TCGA-CM-6675-01 22 37709488 37709488 T C CYTH4 Missense_Mutation p.I374T 0.09 tolerated(0.05) probably_damaging(0.962) TCGA-CM-6675-01 22 50659791 50659791 C T TUBGCP6 Silent p.S999S 0.64 TCGA-CM-6675-01 2 128409690 128409690 G C GPR17 3'UTR 0.29 TCGA-CM-6675-01 2 144244976 144244976 C T ARHGAP15 Silent p.S246S 0.57 TCGA-CM-6675-01 2 170127568 170127568 G T LRP2 Silent p.I722I 0.44 TCGA-CM-6675-01 2 179613074 179613074 T C TTN Intron 0.48 TCGA-CM-6675-01 2 220315877 220315877 C T SPEG Silent p.Y711Y 0.47 TCGA-CM-6675-01 2 241079820 241079820 C T OTOS 5'UTR 0.64 TCGA-CM-6675-01 2 50280542 50280542 G T NRXN1 Missense_Mutation p.S1372Y 0.49 tolerated(0.07) probably_damaging(0.988) TCGA-CM-6675-01 3 111319612 111319612 G T CD96 Missense_Mutation p.G329V 0.43 deleterious(0) probably_damaging(0.989) TCGA-CM-6675-01 3 112693902 112693902 G A CD200R1 5'UTR 0.50 TCGA-CM-6675-01 3 156411914 156411917 TATT - TIPARP Frame_Shift_Del p.I342Tfs*25 0.43 TCGA-CM-6675-01 3 170108863 170108863 C T SKIL Missense_Mutation p.L571F 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-CM-6675-01 3 185332395 185332395 C T SENP2 Missense_Mutation p.S326L 0.33 tolerated(0.38) probably_damaging(0.996) TCGA-CM-6675-01 3 3080618 3080618 C G CNTN4 Silent p.L698L 0.22 TCGA-CM-6675-01 3 39142359 39142359 A G GORASP1 Missense_Mutation p.F149L 0.09 tolerated(0.3) possibly_damaging(0.669) TCGA-CM-6675-01 3 39151608 39151608 T C TTC21A Silent p.A82A 0.11 TCGA-CM-6675-01 3 41266125 41266125 C T CTNNB1 Missense_Mutation p.T41I 0.47 deleterious(0) probably_damaging(0.931) TCGA-CM-6675-01 3 9051992 9051992 C T SRGAP3 Missense_Mutation p.E743K 0.08 deleterious(0.02) probably_damaging(0.986) TCGA-CM-6675-01 4 106162804 106162804 C A TET2 Intron 0.18 TCGA-CM-6675-01 4 114186088 114186088 C T ANK2 Silent p.A474A 0.24 TCGA-CM-6675-01 4 175897561 175897561 A G ADAM29 Silent p.R295R 0.47 TCGA-CM-6675-01 4 40113761 40113761 A G N4BP2 Missense_Mutation p.Q519R 0.80 deleterious(0) probably_damaging(0.999) TCGA-CM-6675-01 4 40439830 40439830 A G RBM47 Missense_Mutation p.Y361H 0.81 deleterious(0.03) possibly_damaging(0.757) TCGA-CM-6675-01 4 5693016 5693016 T G EVC2 Silent p.G165G 0.08 TCGA-CM-6675-01 4 682861 682861 G A MFSD7 Missense_Mutation p.A19V 0.37 tolerated(0.08) benign(0.081) TCGA-CM-6675-01 4 70079918 70079918 T - UGT2B11 Frame_Shift_Del p.T175Lfs*13 0.27 TCGA-CM-6675-01 4 89381272 89381272 A T HERC5 Missense_Mutation p.K139I 0.83 tolerated(0.21) benign(0.001) TCGA-CM-6675-01 5 110837675 110837675 C T STARD4 Silent p.L89L 0.10 TCGA-CM-6675-01 5 134332022 134332022 G A CATSPER3 Silent p.V104V 0.34 TCGA-CM-6675-01 5 135651320 135651320 G A TRPC7 Missense_Mutation p.R310W 0.42 deleterious(0) probably_damaging(0.991) TCGA-CM-6675-01 5 139494345 139494345 G T PURA Missense_Mutation p.Q193H 0.14 deleterious(0) probably_damaging(0.999) TCGA-CM-6675-01 5 140530625 140530625 G A PCDHB6 Missense_Mutation p.V263I 0.29 tolerated(0.05) benign(0.304) TCGA-CM-6675-01 5 176734936 176734936 T C MXD3 Silent p.R117R 0.16 TCGA-CM-6675-01 5 19747128 19747128 A T CDH18 Missense_Mutation p.V149E 0.48 deleterious(0) probably_damaging(1) TCGA-CM-6675-01 6 24650879 24650879 A C TDP2 3'UTR 0.50 TCGA-CM-6675-01 6 25581524 25581524 G A LRRC16A Missense_Mutation p.D955N 0.33 deleterious(0.02) possibly_damaging(0.899) TCGA-CM-6675-01 6 27114916 27114916 A G HIST1H2AH Silent p.G3G 0.33 TCGA-CM-6675-01 6 31599192 31599192 A C PRRC2A Silent p.P914P 0.53 TCGA-CM-6675-01 6 41900293 41900293 G T BYSL Missense_Mutation p.R388L 0.10 deleterious(0) possibly_damaging(0.748) TCGA-CM-6675-01 6 43172731 43172732 CT - CUL9 Frame_Shift_Del p.Y1505* 0.18 TCGA-CM-6675-01 6 5999378 5999378 G A NRN1 Missense_Mutation p.A87V 0.29 tolerated(0.05) benign(0.372) TCGA-CM-6675-01 6 66094330 66094330 G T EYS Missense_Mutation p.S416R 0.34 tolerated(0.06) benign(0.076) TCGA-CM-6675-01 6 70984463 70984463 G A COL9A1 Missense_Mutation p.P330S 1.00 probably_damaging(1) TCGA-CM-6675-01 7 103205973 103205973 C A RELN Missense_Mutation p.W1654C 0.53 deleterious(0) probably_damaging(0.998) TCGA-CM-6675-01 7 107234511 107234511 G T BCAP29 Missense_Mutation p.R102I 0.47 deleterious(0) probably_damaging(1) TCGA-CM-6675-01 7 11675889 11675889 C T THSD7A Missense_Mutation p.R297H 0.09 tolerated(0.08) benign(0.021) TCGA-CM-6675-01 7 131190765 131190765 G T PODXL Missense_Mutation p.D447E 0.38 tolerated(0.09) benign(0.336) TCGA-CM-6675-01 7 149489289 149489289 G T SSPO RNA 0.39 TCGA-CM-6675-01 7 150698984 150698984 C T NOS3 Silent p.S526S 0.40 TCGA-CM-6675-01 7 157985121 157985121 G A PTPRN2 Silent p.N149N 0.45 TCGA-CM-6675-01 7 74237243 74237243 C T GTF2IRD2 Missense_Mutation p.G151S 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-6675-01 8 139703116 139703116 C T COL22A1 Missense_Mutation p.G919D 0.09 unknown(0) TCGA-CM-6675-01 8 145678785 145678785 C T CYHR1 Missense_Mutation p.R102Q 0.35 deleterious(0.03) probably_damaging(0.996) TCGA-CM-6675-01 8 86572198 86572198 A T REXO1L1P 3'UTR 0.10 TCGA-CM-6675-01 8 97345714 97345714 G T PTDSS1 Missense_Mutation p.G448C 0.42 tolerated(0.05) benign(0.156) TCGA-CM-6675-01 9 117001 117001 G A FOXD4 Silent p.C373C 0.07 TCGA-CM-6675-01 9 139730407 139730407 G T RABL6 Intron 0.40 TCGA-CM-6675-01 9 19316772 19316772 T C DENND4C Missense_Mutation p.L581P 0.09 deleterious(0) probably_damaging(0.994) TCGA-CM-6675-01 9 36339633 36339633 C T RNF38 3'UTR 0.82 TCGA-CM-6675-01 9 5823912 5823912 T C ERMP1 Silent p.E286E 0.10 TCGA-CM-6675-01 X 30326861 30326861 G A NR0B1 Missense_Mutation p.P207L 0.93 tolerated(0.1) benign(0.011) TCGA-CM-6675-01 X 3242854 3242854 C T MXRA5 Missense_Mutation p.S291N 0.92 tolerated(0.32) benign(0.002) TCGA-CM-6675-01 X 32486638 32486638 T C DMD Missense_Mutation p.M1047V 0.87 benign(0.012) TCGA-CM-6676-01 10 102849847 102849847 C A TLX1NB 5'UTR 0.14 TCGA-CM-6676-01 10 111860547 111860547 C T ADD3 Nonsense_Mutation p.R46* 0.15 TCGA-CM-6676-01 10 22634743 22634743 C T SPAG6 Silent p.N39N 0.33 TCGA-CM-6676-01 10 70748776 70748776 C T KIAA1279 Missense_Mutation p.A63V 0.36 tolerated(0.3) benign(0.188) TCGA-CM-6676-01 10 7763676 7763676 C T ITIH2 Missense_Mutation p.A268V 0.21 tolerated(0.47) benign(0.194) TCGA-CM-6676-01 10 99640021 99640021 C T CRTAC1 Missense_Mutation p.G602S 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.753) TCGA-CM-6676-01 11 101343020 101343020 G A TRPC6 Missense_Mutation p.L685F 0.17 deleterious(0) probably_damaging(0.999) TCGA-CM-6676-01 11 40136781 40136781 C T LRRC4C Silent p.P354P 0.29 TCGA-CM-6676-01 11 43472752 43472752 A G TTC17 Silent p.K989K 0.08 TCGA-CM-6676-01 11 67767032 67767032 C T UNC93B1 Missense_Mutation p.A171T 0.10 deleterious(0.01) possibly_damaging(0.894) TCGA-CM-6676-01 11 7111125 7111125 C T RBMXL2 Silent p.S258S 0.26 TCGA-CM-6676-01 11 94279164 94279164 T C FUT4 3'UTR 0.10 TCGA-CM-6676-01 12 25300039 25300039 C A CASC1 Splice_Site p.X196_splice 0.37 TCGA-CM-6676-01 12 57059910 57059910 T C PTGES3 Intron 0.20 TCGA-CM-6676-01 12 58157493 58157493 G A CYP27B1 Silent p.P438P 0.51 TCGA-CM-6676-01 12 7276731 7276731 T C RBP5 Missense_Mutation p.R132G 0.12 deleterious(0) benign(0.043) TCGA-CM-6676-01 12 9220476 9220476 T C A2M Intron 0.09 TCGA-CM-6676-01 12 97073413 97073413 G A C12orf55 Missense_Mutation p.V1867M 0.24 tolerated(0.06) possibly_damaging(0.648) TCGA-CM-6676-01 13 35733706 35733706 C A NBEA Missense_Mutation p.A1133E 0.11 tolerated_low_confidence(0.82) benign(0.039) TCGA-CM-6676-01 14 23344861 23344861 G A LRP10 Missense_Mutation p.R235H 0.32 deleterious(0.04) benign(0.027) TCGA-CM-6676-01 14 94088518 94088518 G A UNC79 Missense_Mutation p.E1470K 0.38 deleterious_low_confidence(0) benign(0.318) TCGA-CM-6676-01 15 33941351 33941351 C T RYR3 Missense_Mutation p.H1353Y 0.32 probably_damaging(1) TCGA-CM-6676-01 15 34355632 34355632 A G CHRM5 Silent p.K238K 0.29 TCGA-CM-6676-01 15 74640308 74640308 G A CYP11A1 Nonsense_Mutation p.R120* 0.14 TCGA-CM-6676-01 15 81274327 81274327 T A MESDC2 Missense_Mutation p.Q137L 0.24 deleterious(0) probably_damaging(0.99) TCGA-CM-6676-01 16 1256104 1256104 C T CACNA1H Silent p.S868S 0.18 TCGA-CM-6676-01 16 1261243 1261243 C T CACNA1H Silent p.I1433I 0.30 TCGA-CM-6676-01 16 30525124 30525124 C T ITGAL Missense_Mutation p.T940I 0.40 tolerated(0.07) benign(0.151) TCGA-CM-6676-01 16 61851532 61851532 C T CDH8 Silent p.A376A 0.37 TCGA-CM-6676-01 16 85112593 85112593 A G KIAA0513 Missense_Mutation p.K296E 0.08 deleterious(0.02) possibly_damaging(0.79) TCGA-CM-6676-01 17 15498090 15498090 G A RP11-385D13.1 Missense_Mutation p.R917C 0.55 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CM-6676-01 17 28537598 28537598 G A SLC6A4 Missense_Mutation p.R462W 0.29 deleterious(0) probably_damaging(1) TCGA-CM-6676-01 17 36499058 36499058 G A GPR179 Silent p.D205D 0.30 TCGA-CM-6676-01 17 37340380 37340380 G A CACNB1 Missense_Mutation p.R268C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6676-01 17 39190657 39190657 G A KRTAP1-3 Silent p.A139A 0.13 TCGA-CM-6676-01 17 73658791 73658791 C T RECQL5 Missense_Mutation p.R180H 0.43 deleterious(0.04) probably_damaging(0.991) TCGA-CM-6676-01 17 74539126 74539126 G A PRCD 3'UTR 0.17 TCGA-CM-6676-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.61 deleterious(0) probably_damaging(1) TCGA-CM-6676-01 17 8021589 8021589 T C ALOXE3 Missense_Mutation p.E39G 0.08 tolerated_low_confidence(0.23) benign(0.016) TCGA-CM-6676-01 18 24440814 24440814 G T AQP4 Silent p.I205I 0.19 TCGA-CM-6676-01 18 47015758 47015758 G T RPL17-C18orf32 Missense_Mutation p.P160T 0.56 deleterious(0.03) possibly_damaging(0.582) TCGA-CM-6676-01 19 12244189 12244189 C T ZNF20 Missense_Mutation p.R271H 0.11 tolerated(0.12) benign(0.041) TCGA-CM-6676-01 19 13246286 13246286 C T NACC1 Missense_Mutation p.R89W 0.22 deleterious(0) probably_damaging(0.993) TCGA-CM-6676-01 19 18001748 18001748 C T SLC5A5 Missense_Mutation p.R569W 0.29 deleterious(0.02) benign(0.006) TCGA-CM-6676-01 19 18546841 18546841 C T ISYNA1 Splice_Site p.X325_splice 0.31 TCGA-CM-6676-01 19 2249500 2249500 G A AMH Missense_Mutation p.V57M 0.14 tolerated(0.06) benign(0.032) TCGA-CM-6676-01 19 35800913 35800913 C T MAG Silent p.S456S 0.23 TCGA-CM-6676-01 19 3770682 3770682 C T RAX2 Silent p.A164A 0.25 TCGA-CM-6676-01 19 42703828 42703828 A T DEDD2 Missense_Mutation p.V248D 0.32 deleterious(0) possibly_damaging(0.799) TCGA-CM-6676-01 19 44306520 44306520 C T LYPD5 Missense_Mutation p.V5I 0.30 tolerated_low_confidence(0.5) benign(0.002) TCGA-CM-6676-01 19 51586044 51586044 G T KLK14 5'UTR 0.23 TCGA-CM-6676-01 19 52919198 52919198 C T ZNF528 Missense_Mutation p.R365C 0.33 tolerated(0.12) benign(0.003) TCGA-CM-6676-01 19 53762788 53762788 G A VN1R2 Missense_Mutation p.R387Q 0.34 tolerated(0.15) benign(0) TCGA-CM-6676-01 19 9406161 9406161 T C ZNF699 Missense_Mutation p.E640G 0.09 tolerated(0.05) benign(0) TCGA-CM-6676-01 1 114215318 114215318 G A MAGI3 Silent p.Q1000Q 0.21 TCGA-CM-6676-01 1 11562824 11562824 C T PTCHD2 Missense_Mutation p.R396C 0.23 deleterious(0) probably_damaging(0.998) TCGA-CM-6676-01 1 1256387 1256387 A T CPSF3L Missense_Mutation p.F45I 0.21 deleterious(0) benign(0.255) TCGA-CM-6676-01 1 152193216 152193216 C T HRNR Missense_Mutation p.G297S 0.24 unknown(0) TCGA-CM-6676-01 1 160165766 160165766 A G CASQ1 Missense_Mutation p.D244G 0.10 tolerated(1) benign(0.005) TCGA-CM-6676-01 1 181688971 181688971 C T CACNA1E Missense_Mutation p.R575W 0.18 deleterious(0) possibly_damaging(0.898) TCGA-CM-6676-01 1 182856354 182856354 G A DHX9 Missense_Mutation p.G1200S 0.06 tolerated(0.35) unknown(0) TCGA-CM-6676-01 1 1961804 1961804 C A GABRD 3'UTR 0.42 TCGA-CM-6676-01 1 223991096 223991096 C A TP53BP2 Silent p.L236L 0.33 TCGA-CM-6676-01 1 248551688 248551688 C T OR2T6 Missense_Mutation p.T260M 0.42 tolerated(1) benign(0) TCGA-CM-6676-01 1 27744916 27744916 C T WASF2 Silent p.L91L 0.17 TCGA-CM-6676-01 1 38227485 38227485 G A EPHA10 Missense_Mutation p.R148W 0.09 deleterious(0) probably_damaging(0.999) TCGA-CM-6676-01 1 60331584 60331584 A T HOOK1 Missense_Mutation p.K595N 0.40 deleterious(0) possibly_damaging(0.876) TCGA-CM-6676-01 1 85647870 85647870 G T SYDE2 Missense_Mutation p.Q819K 0.15 tolerated(0.22) benign(0.01) TCGA-CM-6676-01 1 9078339 9078339 C T SLC2A7 Missense_Mutation p.V178I 0.15 tolerated(0.82) benign(0.021) TCGA-CM-6676-01 20 30432768 30432768 T C FOXS1 Missense_Mutation p.K193R 0.12 tolerated(0.06) probably_damaging(0.98) TCGA-CM-6676-01 20 60991230 60991230 G A RBBP8NL Missense_Mutation p.R126W 0.61 deleterious(0) probably_damaging(0.912) TCGA-CM-6676-01 20 62198956 62198956 C A HELZ2 Missense_Mutation p.E585D 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-CM-6676-01 21 31655076 31655076 C A KRTAP24-1 Missense_Mutation p.D59Y 0.10 deleterious(0) probably_damaging(0.988) TCGA-CM-6676-01 21 45175615 45175615 G A PDXK Missense_Mutation p.V266I 0.29 tolerated(0.12) possibly_damaging(0.493) TCGA-CM-6676-01 22 28378352 28378352 G A TTC28 Missense_Mutation p.R2435C 0.13 tolerated_low_confidence(0.19) benign(0.001) TCGA-CM-6676-01 22 30690970 30690970 G A TBC1D10A Missense_Mutation p.A207V 0.50 deleterious(0) probably_damaging(0.991) TCGA-CM-6676-01 22 33255331 33255331 G A TIMP3 Silent p.P201P 0.43 TCGA-CM-6676-01 2 130737718 130737718 G A RAB6C Silent p.P10P 0.25 TCGA-CM-6676-01 2 210837963 210837963 G A UNC80 Silent p.L2786L 0.47 TCGA-CM-6676-01 2 232577696 232577696 C T PTMA 3'UTR 0.28 TCGA-CM-6676-01 2 238253305 238253305 G A COL6A3 Silent p.N2452N 0.41 TCGA-CM-6676-01 2 242541334 242541334 C T THAP4 Missense_Mutation p.A531T 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-CM-6676-01 2 27601598 27601598 G A ZNF513 Missense_Mutation p.R179C 0.09 deleterious(0.01) possibly_damaging(0.898) TCGA-CM-6676-01 2 48873888 48873888 C G STON1-GTF2A1L Missense_Mutation p.P933A 0.48 tolerated(0.55) benign(0.071) TCGA-CM-6676-01 2 50149094 50149094 C T NRXN1 Silent p.E1544E 0.33 TCGA-CM-6676-01 2 5832946 5832946 G A SOX11 Silent p.P31P 0.09 TCGA-CM-6676-01 2 66664874 66664874 C T MEIS1 Silent p.D6D 0.09 TCGA-CM-6676-01 2 97783808 97783808 C T ANKRD36 Silent p.L69L 0.15 TCGA-CM-6676-01 3 10312131 10312131 A G TATDN2 Missense_Mutation p.N422S 0.26 tolerated(1) benign(0.002) TCGA-CM-6676-01 3 123444871 123444871 G A MYLK Missense_Mutation p.A524V 0.10 tolerated(0.13) probably_damaging(0.989) TCGA-CM-6676-01 3 180679287 180679287 A C FXR1 Missense_Mutation p.K341T 0.28 tolerated(0.11) probably_damaging(0.999) TCGA-CM-6676-01 3 30686363 30686363 C T TGFBR2 Silent p.I98I 0.13 TCGA-CM-6676-01 3 44776443 44776443 T C ZNF501 Missense_Mutation p.L177P 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-6676-01 3 48209434 48209434 T C CDC25A Missense_Mutation p.T311A 0.08 tolerated(0.78) benign(0.01) TCGA-CM-6676-01 3 49831327 49831327 G A CDHR4 Silent p.S464S 0.15 TCGA-CM-6676-01 3 51864486 51864486 G A IQCF3 Missense_Mutation p.R45H 0.19 deleterious(0) probably_damaging(0.988) TCGA-CM-6676-01 3 62464048 62464048 C T CADPS Missense_Mutation p.A1073T 0.38 deleterious(0.01) possibly_damaging(0.499) TCGA-CM-6676-01 4 110460943 110460943 G A SEC24B 3'UTR 0.20 TCGA-CM-6676-01 4 126328171 126328171 G A FAT4 Missense_Mutation p.R1815H 0.20 probably_damaging(1) TCGA-CM-6676-01 4 147830323 147830323 G A TTC29 Silent p.F85F 0.41 TCGA-CM-6676-01 4 164534669 164534669 G T MARCH1 Intron 0.20 TCGA-CM-6676-01 4 166999156 166999156 G T TLL1 Missense_Mutation p.A806S 0.22 tolerated(0.37) benign(0.089) TCGA-CM-6676-01 4 174254265 174254265 T A HMGB2 Missense_Mutation p.D84V 0.09 deleterious(0.05) benign(0.004) TCGA-CM-6676-01 4 48559610 48559610 G T FRYL Silent p.R1329R 0.35 TCGA-CM-6676-01 4 5841361 5841361 C T CRMP1 Missense_Mutation p.D400N 0.31 tolerated(0.06) probably_damaging(0.974) TCGA-CM-6676-01 4 96127868 96127868 C T UNC5C Missense_Mutation p.V605I 0.07 tolerated(0.09) benign(0.194) TCGA-CM-6676-01 5 102612765 102612766 - A C5orf30 3'UTR 0.32 TCGA-CM-6676-01 5 112164616 112164616 C T APC Nonsense_Mutation p.R564* 0.39 TCGA-CM-6676-01 5 112175480 112175480 G T APC Nonsense_Mutation p.E1397* 0.15 TCGA-CM-6676-01 5 140735749 140735749 C T PCDHGA4 Nonsense_Mutation p.R328* 0.41 TCGA-CM-6676-01 5 15936617 15936617 C T FBXL7 Silent p.P266P 0.38 TCGA-CM-6676-01 5 179070114 179070114 G A C5orf60 Missense_Mutation p.R147W 0.19 tolerated(0.16) possibly_damaging(0.798) TCGA-CM-6676-01 5 475014 475014 G T SLC9A3 Missense_Mutation p.P829T 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CM-6676-01 5 82836109 82836110 - G VCAN Frame_Shift_Ins p.E2431Rfs*10 0.12 TCGA-CM-6676-01 6 110522776 110522776 C A CDC40 Missense_Mutation p.P98T 0.20 deleterious(0) probably_damaging(0.988) TCGA-CM-6676-01 6 127771251 127771252 - T KIAA0408 Frame_Shift_Ins p.S128Ifs*18 0.20 TCGA-CM-6676-01 6 165749683 165749683 G A PDE10A Silent p.A732A 0.41 TCGA-CM-6676-01 6 24460535 24460535 A T GPLD1 Missense_Mutation p.V327E 0.36 deleterious(0) benign(0.193) TCGA-CM-6676-01 6 26124683 26124685 AAG - HIST1H2AC In_Frame_Del p.K76del 0.12 TCGA-CM-6676-01 6 29796455 29796455 C T HLA-G Missense_Mutation p.A160V 0.16 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-CM-6676-01 6 38690878 38690878 C T DNAH8 5'Flank 0.29 TCGA-CM-6676-01 6 42851310 42851310 T C RPL7L1 Missense_Mutation p.L81S 0.09 tolerated(0.13) benign(0.026) TCGA-CM-6676-01 6 43013046 43013046 C T CUL7 Missense_Mutation p.R1070H 0.35 tolerated(0.53) benign(0.15) TCGA-CM-6676-01 6 43023859 43023859 T C MRPL2 Silent p.G160G 0.10 TCGA-CM-6676-01 6 65301524 65301524 C A EYS Missense_Mutation p.E1412D 0.19 tolerated_low_confidence(0.14) possibly_damaging(0.866) TCGA-CM-6676-01 6 76580392 76580392 T G MYO6 Missense_Mutation p.L658R 0.10 deleterious(0) unknown(0) TCGA-CM-6676-01 6 90642470 90642470 C T BACH2 Missense_Mutation p.R728Q 0.20 tolerated(0.31) benign(0.277) TCGA-CM-6676-01 7 154461135 154461135 C A DPP6 Missense_Mutation p.P249H 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-CM-6676-01 7 21646122 21646122 G A DNAH11 Missense_Mutation p.E1243K 0.11 probably_damaging(0.991) TCGA-CM-6676-01 7 23053737 23053737 C A FAM126A 5'UTR 0.44 TCGA-CM-6676-01 7 92164174 92164174 A G RBM48 Missense_Mutation p.T303A 0.36 tolerated(0.09) benign(0) TCGA-CM-6676-01 8 127569623 127569623 C T FAM84B Silent p.Q4Q 0.06 TCGA-CM-6676-01 8 145101588 145101588 C T SPATC1 Missense_Mutation p.R503C 0.20 deleterious(0) probably_damaging(0.998) TCGA-CM-6676-01 8 145617842 145617842 A T ADCK5 Missense_Mutation p.I484F 0.07 deleterious(0.01) possibly_damaging(0.617) TCGA-CM-6676-01 8 57026447 57026447 G A MOS Missense_Mutation p.A32V 0.09 tolerated(0.1) benign(0.14) TCGA-CM-6676-01 8 59058973 59058973 G A FAM110B Missense_Mutation p.V62I 0.13 deleterious(0) probably_damaging(0.985) TCGA-CM-6676-01 8 94828666 94828666 A T TMEM67 Nonsense_Mutation p.R992* 0.06 TCGA-CM-6676-01 9 111674606 111674606 G A IKBKAP Missense_Mutation p.T376M 0.07 deleterious(0.02) benign(0.269) TCGA-CM-6676-01 9 139733447 139733447 C T RABL6 Missense_Mutation p.P457L 0.10 tolerated(0.68) benign(0) TCGA-CM-6676-01 9 32631114 32631114 G T TAF1L Silent p.I1488I 0.13 TCGA-CM-6676-01 9 34514719 34514719 A C DNAI1 Silent p.A600A 0.25 TCGA-CM-6676-01 9 72082871 72082871 G T APBA1 Nonsense_Mutation p.C450* 0.18 TCGA-CM-6676-01 9 74840616 74840616 T G GDA Missense_Mutation p.D246E 0.09 tolerated(0.69) benign(0.001) TCGA-CM-6676-01 9 79121249 79121249 T C GCNT1 3'UTR 0.08 TCGA-CM-6676-01 X 101572313 101572313 G A NXF2 Intron 0.31 TCGA-CM-6676-01 X 31496267 31496267 C T DMD Missense_Mutation p.D2965N 0.64 possibly_damaging(0.741) TCGA-CM-6676-01 X 5821285 5821285 G A NLGN4X Silent p.S478S 0.63 TCGA-CM-6677-01 10 101162407 101162407 G A GOT1 Silent p.A344A 0.15 TCGA-CM-6677-01 10 101953109 101953109 G A CHUK Missense_Mutation p.P685L 0.27 tolerated(0.08) benign(0.005) TCGA-CM-6677-01 10 102289192 102289193 - GGC NDUFB8 In_Frame_Ins p.A52dup 0.41 TCGA-CM-6677-01 10 118100270 118100270 T G CCDC172 Missense_Mutation p.F64V 0.18 deleterious(0.01) benign(0.12) TCGA-CM-6677-01 10 75936626 75936626 A G ADK Intron 0.08 TCGA-CM-6677-01 10 98715236 98715236 G A LCOR Missense_Mutation p.A287T 0.16 tolerated(0.56) benign(0.021) TCGA-CM-6677-01 11 104819314 104819314 C G CASP4 Missense_Mutation p.V291L 0.10 deleterious(0.04) benign(0.177) TCGA-CM-6677-01 11 126276863 126276863 A T ST3GAL4 Nonsense_Mutation p.K43* 0.17 TCGA-CM-6677-01 11 126294453 126294453 C T KIRREL3 3'UTR 0.36 TCGA-CM-6677-01 11 126314964 126314964 C T KIRREL3 Missense_Mutation p.V388M 0.11 deleterious(0) probably_damaging(0.987) TCGA-CM-6677-01 11 252612 252612 T C PSMD13 3'UTR 0.10 TCGA-CM-6677-01 11 61897350 61897350 C T INCENP Silent p.N117N 0.48 TCGA-CM-6677-01 11 64137038 64137038 G A RPS6KA4 Missense_Mutation p.V517M 0.15 deleterious(0.04) probably_damaging(0.989) TCGA-CM-6677-01 11 6519729 6519729 G A DNHD1 Missense_Mutation p.R95H 0.53 benign(0.225) TCGA-CM-6677-01 11 84028128 84028128 C T DLG2 Intron 0.51 TCGA-CM-6677-01 12 100482833 100482833 G A UHRF1BP1L Missense_Mutation p.T294M 0.41 tolerated(0.24) benign(0.202) TCGA-CM-6677-01 12 131280572 131280572 G A STX2 3'UTR 0.09 TCGA-CM-6677-01 12 29617532 29617532 G A OVCH1 Missense_Mutation p.S678L 0.45 tolerated(0.08) possibly_damaging(0.457) TCGA-CM-6677-01 12 57167835 57167835 G A HSD17B6 Missense_Mutation p.E67K 0.11 tolerated(0.11) benign(0.127) TCGA-CM-6677-01 12 58125620 58125620 G T AGAP2 Missense_Mutation p.A642E 0.57 tolerated(0.25) possibly_damaging(0.73) TCGA-CM-6677-01 12 6647356 6647356 C T GAPDH 3'UTR 0.82 TCGA-CM-6677-01 12 7014849 7014852 GAGA - LRRC23 Frame_Shift_Del p.E18Kfs*34 0.65 TCGA-CM-6677-01 12 977744 977744 C T WNK1 Intron 0.14 TCGA-CM-6677-01 13 108861575 108861575 C A LIG4 Missense_Mutation p.R681I 0.47 tolerated(0.13) benign(0.001) TCGA-CM-6677-01 13 114786968 114786968 C T RASA3 Missense_Mutation p.A233T 0.11 tolerated(0.6) probably_damaging(0.999) TCGA-CM-6677-01 13 37271241 37271241 C A SERTM1 3'UTR 0.14 TCGA-CM-6677-01 13 37582284 37582284 C T EXOSC8 Missense_Mutation p.P193L 0.42 tolerated(0.12) probably_damaging(0.976) TCGA-CM-6677-01 13 45148291 45148291 C T TSC22D1 Missense_Mutation p.M640I 0.49 tolerated(0.31) benign(0.002) TCGA-CM-6677-01 13 78474034 78474034 G A EDNRB Missense_Mutation p.A475V 0.13 deleterious(0.05) possibly_damaging(0.835) TCGA-CM-6677-01 13 78492520 78492520 C T EDNRB Silent p.A153A 0.50 TCGA-CM-6677-01 14 104173517 104173518 - G XRCC3 Frame_Shift_Ins p.T77Hfs*28 0.24 TCGA-CM-6677-01 14 94711945 94711945 C T PPP4R4 Missense_Mutation p.H456Y 0.15 tolerated(0.06) benign(0.033) TCGA-CM-6677-01 15 23889640 23889640 T A MAGEL2 Missense_Mutation p.N481Y 0.15 deleterious(0.01) possibly_damaging(0.58) TCGA-CM-6677-01 15 49118234 49118234 G A SHC4 Silent p.S609S 0.17 TCGA-CM-6677-01 15 59523927 59523927 C T MYO1E Missense_Mutation p.V162I 0.29 tolerated(0.07) possibly_damaging(0.463) TCGA-CM-6677-01 15 71055689 71055689 C T UACA Missense_Mutation p.G20S 0.14 tolerated_low_confidence(0.71) benign(0.002) TCGA-CM-6677-01 16 20360438 20360438 G A UMOD Missense_Mutation p.T62I 0.28 tolerated(0.21) benign(0.006) TCGA-CM-6677-01 16 3190766 3190766 C T ZNF213 Silent p.S266S 0.44 TCGA-CM-6677-01 16 58019123 58019123 C T TEPP Silent p.S213S 0.26 TCGA-CM-6677-01 16 58438490 58438490 G A GINS3 Missense_Mutation p.E209K 0.22 deleterious(0.03) benign(0.41) TCGA-CM-6677-01 16 71483332 71483332 G A ZNF23 Missense_Mutation p.S199L 0.29 tolerated(0.09) benign(0.005) TCGA-CM-6677-01 16 89345606 89345606 G A ANKRD11 Silent p.I2448I 0.31 TCGA-CM-6677-01 17 16721434 16721434 G A AC022596.6 RNA 0.09 TCGA-CM-6677-01 17 42335498 42335498 C T SLC4A1 Missense_Mutation p.G380R 0.74 deleterious(0) probably_damaging(1) TCGA-CM-6677-01 17 66511603 66511603 C T PRKAR1A Silent p.Y21Y 0.59 TCGA-CM-6677-01 17 70119780 70119781 - G SOX9 Frame_Shift_Ins p.R264Qfs*32 0.53 TCGA-CM-6677-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.73 deleterious(0) probably_damaging(0.997) TCGA-CM-6677-01 17 78109804 78109804 G A EIF4A3 Silent p.N406N 0.17 TCGA-CM-6677-01 17 78265575 78265575 G A RNF213 Missense_Mutation p.E474K 0.60 possibly_damaging(0.59) TCGA-CM-6677-01 18 77170863 77170863 G A NFATC1 Silent p.P183P 0.38 TCGA-CM-6677-01 19 11280590 11280590 G A KANK2 Missense_Mutation p.A830V 0.19 deleterious(0) probably_damaging(0.997) TCGA-CM-6677-01 19 12222105 12222105 A C ZNF788 Missense_Mutation p.M79L 0.60 tolerated_low_confidence(0.67) benign(0) TCGA-CM-6677-01 19 1295783 1295783 C G EFNA2 Missense_Mutation p.S127W 0.25 deleterious(0) probably_damaging(0.995) TCGA-CM-6677-01 19 15483091 15483091 A G AKAP8 Missense_Mutation p.L310P 0.12 tolerated(0.17) benign(0.001) TCGA-CM-6677-01 19 17885046 17885046 A C FCHO1 Splice_Site p.X264_splice 0.19 TCGA-CM-6677-01 19 22574246 22574246 T - ZNF98 3'UTR 0.12 TCGA-CM-6677-01 19 22846612 22846612 T C ZNF492 Silent p.S47S 0.20 TCGA-CM-6677-01 19 44384224 44384224 G T ZNF404 Nonsense_Mutation p.S25* 0.26 TCGA-CM-6677-01 19 50393336 50393336 C T IL4I1 Missense_Mutation p.R454H 0.50 tolerated(0.37) benign(0.243) TCGA-CM-6677-01 19 53572562 53572562 G A ZNF160 Missense_Mutation p.R409C 0.09 tolerated(0.08) probably_damaging(0.977) TCGA-CM-6677-01 19 55396904 55396904 C T FCAR Missense_Mutation p.R110W 0.21 deleterious(0) possibly_damaging(0.899) TCGA-CM-6677-01 19 56459346 56459346 C A NLRP8 Silent p.P26P 0.13 TCGA-CM-6677-01 19 57027705 57027705 A G ZNF471 Missense_Mutation p.N32S 0.30 tolerated(0.27) benign(0.001) TCGA-CM-6677-01 19 58861779 58861779 G A A1BG Silent p.F383F 0.28 TCGA-CM-6677-01 19 756940 756940 G A MISP 5'UTR 0.35 TCGA-CM-6677-01 19 7975165 7975165 C T MAP2K7 Silent p.N118N 0.46 TCGA-CM-6677-01 19 9064121 9064121 G T MUC16 Silent p.T7775T 0.16 TCGA-CM-6677-01 1 112524838 112524838 G A KCND3 Missense_Mutation p.R171W 0.25 deleterious(0.01) benign(0.428) TCGA-CM-6677-01 1 118449142 118449142 A G GDAP2 Missense_Mutation p.S208P 0.22 tolerated(0.1) possibly_damaging(0.567) TCGA-CM-6677-01 1 13669343 13669343 G A PRAMEF14 Silent p.Y329Y 0.39 TCGA-CM-6677-01 1 150258969 150258969 C T C1orf51 Missense_Mutation p.P254L 0.31 deleterious(0) probably_damaging(0.992) TCGA-CM-6677-01 1 152733999 152733999 G A KPRP 3'UTR 0.41 TCGA-CM-6677-01 1 154067511 154067511 T G NUP210L Missense_Mutation p.E696A 0.25 deleterious(0) probably_damaging(0.999) TCGA-CM-6677-01 1 155162059 155162059 C T MUC1 Missense_Mutation p.G25D 0.26 tolerated_low_confidence(0.17) probably_damaging(0.986) TCGA-CM-6677-01 1 158059602 158059602 C G KIRREL Missense_Mutation p.D422E 0.33 tolerated(0.05) possibly_damaging(0.459) TCGA-CM-6677-01 1 16255494 16255494 C T SPEN Missense_Mutation p.S920F 0.29 benign(0.429) TCGA-CM-6677-01 1 168014363 168014363 A C DCAF6 Missense_Mutation p.E719A 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-CM-6677-01 1 169572317 169572317 C A SELP Missense_Mutation p.R551I 0.36 tolerated(0.2) benign(0.012) TCGA-CM-6677-01 1 175292457 175292457 A T TNR 3'UTR 0.38 TCGA-CM-6677-01 1 180006144 180006144 C T CEP350 Missense_Mutation p.R1344C 0.26 benign(0.082) TCGA-CM-6677-01 1 193119446 193119446 C T CDC73 Missense_Mutation p.R281C 0.30 deleterious(0.03) possibly_damaging(0.67) TCGA-CM-6677-01 1 20975035 20975035 C T PINK1 Silent p.C387C 0.13 TCGA-CM-6677-01 1 2121149 2121149 C T C1orf86 Silent p.%3D 0.26 TCGA-CM-6677-01 1 223285618 223285618 T C TLR5 Silent p.K252K 0.39 TCGA-CM-6677-01 1 248436644 248436644 G T OR2T33 Missense_Mutation p.A158D 0.09 deleterious(0.01) probably_damaging(0.978) TCGA-CM-6677-01 1 25611225 25611225 G T RHD Missense_Mutation p.G104W 0.19 tolerated(0.06) benign(0.071) TCGA-CM-6677-01 1 26153281 26153281 C T MTFR1L Missense_Mutation p.R139C 0.08 deleterious(0) possibly_damaging(0.887) TCGA-CM-6677-01 1 29323783 29323783 G A EPB41 Silent p.L246L 0.26 TCGA-CM-6677-01 1 31188874 31188874 G T MATN1 Missense_Mutation p.D363E 0.16 tolerated(0.96) benign(0.107) TCGA-CM-6677-01 1 31837005 31837007 AAG - ZCCHC17 In_Frame_Del p.K234del 0.24 TCGA-CM-6677-01 1 36643709 36643709 T C MAP7D1 Missense_Mutation p.S539P 0.12 benign(0) TCGA-CM-6677-01 1 89357205 89357205 G A GTF2B 5'UTR 0.15 TCGA-CM-6677-01 20 16030705 16030706 - A MACROD2 3'UTR 0.36 TCGA-CM-6677-01 20 1902267 1902267 C T SIRPA Silent p.D221D 0.26 TCGA-CM-6677-01 20 2539196 2539196 C T TMC2 Silent p.R59R 0.10 TCGA-CM-6677-01 20 2539228 2539228 G A TMC2 Missense_Mutation p.R70Q 0.13 tolerated_low_confidence(0.36) benign(0.001) TCGA-CM-6677-01 20 3025336 3025336 G A GNRH2 Missense_Mutation p.D56N 0.09 tolerated_low_confidence(0.2) benign(0.002) TCGA-CM-6677-01 20 3329269 3329269 T C C20orf194 Missense_Mutation p.D231G 0.09 tolerated(0.05) possibly_damaging(0.834) TCGA-CM-6677-01 20 34022467 34022467 G A GDF5 Missense_Mutation p.T249M 0.72 tolerated(0.28) benign(0.086) TCGA-CM-6677-01 20 34208908 34208908 A G SPAG4 Silent p.S426S 0.08 TCGA-CM-6677-01 20 35060424 35060424 G A DLGAP4 Missense_Mutation p.A102T 0.10 tolerated(0.25) probably_damaging(0.934) TCGA-CM-6677-01 20 36952310 36952310 C A BPI Silent p.P269P 0.14 TCGA-CM-6677-01 20 37117127 37117127 C T RALGAPB Missense_Mutation p.H18Y 0.10 deleterious(0.03) benign(0.379) TCGA-CM-6677-01 20 44856148 44856148 G A CDH22 Silent p.T223T 0.33 TCGA-CM-6677-01 20 62837070 62837070 C T MYT1 Missense_Mutation p.S105L 0.73 benign(0.004) TCGA-CM-6677-01 21 40834423 40834423 G T SH3BGR Missense_Mutation p.E119D 0.21 tolerated(0.2) benign(0.039) TCGA-CM-6677-01 22 24219285 24219285 C T AP000350.10 Nonsense_Mutation p.R120* 0.31 TCGA-CM-6677-01 22 43442492 43442492 C A TTLL1 Missense_Mutation p.V356F 0.18 tolerated(0.32) benign(0.055) TCGA-CM-6677-01 2 11718489 11718489 C T GREB1 Missense_Mutation p.T235M 0.53 deleterious(0.02) benign(0.013) TCGA-CM-6677-01 2 136594268 136594268 C T LCT Missense_Mutation p.A158T 0.67 tolerated(0.13) possibly_damaging(0.804) TCGA-CM-6677-01 2 148680663 148680663 G A ACVR2A Missense_Mutation p.R400H 0.66 deleterious(0) probably_damaging(0.997) TCGA-CM-6677-01 2 170063333 170063333 C A LRP2 Missense_Mutation p.K2299N 0.39 probably_damaging(0.938) TCGA-CM-6677-01 2 215279274 215279274 C T VWC2L Silent p.H119H 0.44 TCGA-CM-6677-01 2 215890452 215890452 C T ABCA12 Missense_Mutation p.R411H 0.56 tolerated(0.08) benign(0.11) TCGA-CM-6677-01 2 216289965 216289965 C T FN1 Silent p.P296P 0.19 TCGA-CM-6677-01 2 219754816 219754816 C T WNT10A Missense_Mutation p.R163W 0.11 deleterious(0.01) probably_damaging(0.91) TCGA-CM-6677-01 2 233350793 233350793 G A ECEL1 Missense_Mutation p.R191C 0.57 tolerated(0.09) benign(0.2) TCGA-CM-6677-01 2 234737392 234737392 C T MROH2A Silent p.A1410A 0.16 TCGA-CM-6677-01 2 28117484 28117484 G A BRE Missense_Mutation p.V21M 0.59 deleterious(0.04) possibly_damaging(0.61) TCGA-CM-6677-01 2 29380103 29380103 C A CLIP4 Missense_Mutation p.S430Y 0.65 deleterious(0) probably_damaging(0.999) TCGA-CM-6677-01 3 121304887 121304887 C T ARGFX Nonsense_Mutation p.R130* 0.38 TCGA-CM-6677-01 3 134644666 134644666 A G EPHB1 Missense_Mutation p.M23V 0.11 deleterious(0) possibly_damaging(0.457) TCGA-CM-6677-01 3 151094629 151094629 C T MED12L Silent p.L1330L 0.47 TCGA-CM-6677-01 3 164716398 164716398 A G SI Silent p.S1490S 0.18 TCGA-CM-6677-01 3 197402008 197402008 G A KIAA0226 Missense_Mutation p.R934W 0.41 deleterious(0) unknown(0) TCGA-CM-6677-01 3 38793976 38793976 G A SCN10A Missense_Mutation p.R497C 0.52 deleterious(0) possibly_damaging(0.816) TCGA-CM-6677-01 3 54604005 54604005 G A CACNA2D3 Silent p.P254P 0.15 TCGA-CM-6677-01 4 10515213 10515213 C T CLNK Missense_Mutation p.G261R 0.26 tolerated(0.41) possibly_damaging(0.718) TCGA-CM-6677-01 4 122301640 122301640 T A QRFPR Missense_Mutation p.I55F 0.18 deleterious(0) possibly_damaging(0.827) TCGA-CM-6677-01 4 134073139 134073139 G A PCDH10 Missense_Mutation p.R615Q 0.14 tolerated(0.07) probably_damaging(0.997) TCGA-CM-6677-01 4 140810584 140810584 C A MAML3 Missense_Mutation p.R669L 0.17 probably_damaging(0.998) TCGA-CM-6677-01 4 153247265 153247265 T A FBXW7 Missense_Mutation p.R513W 0.62 tolerated(0.12) probably_damaging(0.985) TCGA-CM-6677-01 4 155219360 155219360 G T DCHS2 Missense_Mutation p.P1581T 0.10 deleterious(0) probably_damaging(0.965) TCGA-CM-6677-01 4 169196590 169196590 C T DDX60 Missense_Mutation p.R737Q 0.59 deleterious(0.01) probably_damaging(0.998) TCGA-CM-6677-01 4 71497579 71497579 G A ENAM Missense_Mutation p.R46Q 0.41 deleterious(0.04) possibly_damaging(0.744) TCGA-CM-6677-01 4 85416835 85416838 CTCT - NKX6-1 Frame_Shift_Del p.E277Vfs*66 0.13 TCGA-CM-6677-01 5 112176027 112176030 TTAT - APC Frame_Shift_Del p.I1580Lfs*69 0.62 TCGA-CM-6677-01 5 125960337 125960337 T G PHAX Missense_Mutation p.V329G 0.33 deleterious(0) benign(0.178) TCGA-CM-6677-01 5 140719254 140719254 C T PCDHGA2 Missense_Mutation p.A239V 0.24 deleterious_low_confidence(0.02) benign(0.159) TCGA-CM-6677-01 5 140740972 140740972 G T PCDHGB2 Missense_Mutation p.A424S 0.21 deleterious(0) probably_damaging(0.964) TCGA-CM-6677-01 5 140741730 140741730 C T PCDHGB2 Silent p.S676S 0.16 TCGA-CM-6677-01 5 140800868 140800868 G A PCDHGA11 Missense_Mutation p.R25Q 0.46 tolerated_low_confidence(0.11) benign(0.029) TCGA-CM-6677-01 5 141334938 141334938 G A PCDH12 Missense_Mutation p.R827C 0.25 deleterious(0) probably_damaging(1) TCGA-CM-6677-01 5 147012290 147012290 C T JAKMIP2 Missense_Mutation p.A577T 0.10 tolerated(0.17) benign(0.097) TCGA-CM-6677-01 5 150667947 150667947 C T SLC36A3 Silent p.Q204Q 0.17 TCGA-CM-6677-01 5 153413888 153413888 C T FAM114A2 Missense_Mutation p.S87N 0.14 tolerated(0.2) benign(0.075) TCGA-CM-6677-01 5 161524689 161524689 C T GABRG2 Missense_Mutation p.R125C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CM-6677-01 5 167517594 167517594 C T TENM2 Missense_Mutation p.R511C 0.24 deleterious(0) possibly_damaging(0.899) TCGA-CM-6677-01 5 16794812 16794812 G A MYO10 Missense_Mutation p.A137V 0.25 deleterious(0) probably_damaging(0.996) TCGA-CM-6677-01 5 60189297 60189297 A G ERCC8 Intron 0.14 TCGA-CM-6677-01 5 64814252 64814252 T C CENPK 3'UTR 0.19 TCGA-CM-6677-01 5 71491928 71491928 G A MAP1B Missense_Mutation p.E916K 0.10 probably_damaging(0.981) TCGA-CM-6677-01 5 891401 891401 T C BRD9 Missense_Mutation p.E90G 0.22 tolerated(0.14) probably_damaging(0.968) TCGA-CM-6677-01 5 93217282 93217282 C T FAM172A Missense_Mutation p.R227Q 0.20 tolerated(0.14) probably_damaging(0.998) TCGA-CM-6677-01 5 94253672 94253672 C T MCTP1 Missense_Mutation p.G427S 0.31 tolerated_low_confidence(0.57) benign(0.001) TCGA-CM-6677-01 6 116580002 116580002 C T TSPYL4 5'Flank 0.26 TCGA-CM-6677-01 6 146276180 146276180 G A SHPRH Silent p.S93S 0.20 TCGA-CM-6677-01 6 147124863 147124863 C T ADGB Intron 0.62 TCGA-CM-6677-01 6 29364559 29364559 T A OR12D2 Missense_Mutation p.V28D 0.63 deleterious(0) possibly_damaging(0.541) TCGA-CM-6677-01 6 33237291 33237291 G A VPS52 Silent p.I116I 0.10 TCGA-CM-6677-01 6 84646001 84646001 G A CYB5R4 Silent p.K338K 0.73 TCGA-CM-6677-01 7 107566714 107566714 G A LAMB1 Missense_Mutation p.R1660W 0.45 deleterious(0.02) possibly_damaging(0.453) TCGA-CM-6677-01 7 107748186 107748186 T C LAMB4 Missense_Mutation p.K161E 0.09 tolerated(0.18) benign(0.068) TCGA-CM-6677-01 7 147183033 147183033 G T CNTNAP2 Silent p.V559V 0.26 TCGA-CM-6677-01 7 24703255 24703255 T C MPP6 Missense_Mutation p.L233P 0.17 deleterious(0) probably_damaging(1) TCGA-CM-6677-01 7 29519894 29519894 G A CHN2 Splice_Site p.X193_splice 0.13 TCGA-CM-6677-01 7 38574530 38574530 C A AMPH Splice_Site p.X50_splice 0.27 TCGA-CM-6677-01 7 38725600 38725600 C T FAM183B Silent p.A2A 0.23 TCGA-CM-6677-01 7 39247091 39247091 C T POU6F2 Missense_Mutation p.A128V 0.38 deleterious(0) probably_damaging(0.972) TCGA-CM-6677-01 7 42004061 42004061 C T GLI3 Missense_Mutation p.R1537H 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-CM-6677-01 7 4855994 4855994 G A RADIL Missense_Mutation p.R611C 0.33 deleterious(0) possibly_damaging(0.841) TCGA-CM-6677-01 7 71488685 71488685 C T CALN1 Missense_Mutation p.R153H 0.43 deleterious(0.04) benign(0.344) TCGA-CM-6677-01 8 109498839 109498839 C G EMC2 3'UTR 0.12 TCGA-CM-6677-01 8 62566210 62566210 T C ASPH Missense_Mutation p.E111G 0.08 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-CM-6677-01 9 104314053 104314053 A G RNF20 Missense_Mutation p.M454V 0.60 deleterious(0.04) benign(0.019) TCGA-CM-6677-01 9 115421741 115421748 TGGGTGCT A KIAA1958 Frame_Shift_Del p.W515Rfs*51 0.67 TCGA-CM-6677-01 9 125315468 125315468 G A OR1N2 Missense_Mutation p.R7H 0.17 deleterious_low_confidence(0.04) benign(0) TCGA-CM-6677-01 9 14748511 14748511 C A FREM1 Missense_Mutation p.R1895I 0.58 tolerated(0.5) benign(0.004) TCGA-CM-6677-01 9 32635568 32635568 C T TAF1L Missense_Mutation p.G4S 0.67 tolerated_low_confidence(0.46) benign(0.002) TCGA-CM-6677-01 9 35741716 35741716 T C GBA2 Missense_Mutation p.T247A 0.08 tolerated(0.09) benign(0.217) TCGA-CM-6677-01 9 36169589 36169589 G A CCIN Missense_Mutation p.M30I 0.67 tolerated(0.08) benign(0.001) TCGA-CM-6677-01 9 99607278 99607278 G A ZNF782 Silent p.D12D 0.13 TCGA-CM-6677-01 X 112058802 112058802 T G AMOT Missense_Mutation p.Q392H 0.18 unknown(0) TCGA-CM-6677-01 X 132351469 132351469 G A TFDP3 Silent p.D273D 0.45 TCGA-CM-6677-01 X 135630845 135630845 G C VGLL1 Missense_Mutation p.L104F 0.12 tolerated(0.06) benign(0.051) TCGA-CM-6677-01 X 140785755 140785755 C A SPANXD Missense_Mutation p.R54L 0.05 tolerated(0.66) benign(0.426) TCGA-CM-6677-01 X 32490293 32490293 G A DMD Silent p.L979L 0.54 TCGA-CM-6677-01 X 34148894 34148894 G A FAM47A Missense_Mutation p.T501M 0.44 tolerated(0.24) benign(0.386) TCGA-CM-6677-01 X 48814791 48814791 G A OTUD5 Silent p.A14A 0.16 TCGA-CM-6677-01 X 49851313 49851313 G A CLCN5 Missense_Mutation p.R448Q 0.09 deleterious(0.02) benign(0.312) TCGA-CM-6677-01 X 63412228 63412228 A - AMER1 Frame_Shift_Del p.F313Lfs*4 0.44 TCGA-CM-6677-01 X 70516721 70516721 G T NONO Missense_Mutation p.R256I 0.14 deleterious(0) probably_damaging(0.981) TCGA-CM-6677-01 X 77243898 77243898 C T ATP7A Missense_Mutation p.A94V 0.15 tolerated(0.26) benign(0.094) TCGA-CM-6677-01 X 92964579 92964579 G T FAM133A Missense_Mutation p.G54V 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-CM-6678-01 10 104235508 104235508 A G TMEM180 Missense_Mutation p.T441A 0.08 tolerated(0.78) benign(0.001) TCGA-CM-6678-01 10 114920422 114920422 C T TCF7L2 Nonsense_Mutation p.R455* 0.51 TCGA-CM-6678-01 10 119043337 119043338 TT - PDZD8 Frame_Shift_Del p.K969Tfs*12 0.17 TCGA-CM-6678-01 10 12940451 12940451 G A CCDC3 Missense_Mutation p.R260W 0.29 tolerated_low_confidence(0.14) possibly_damaging(0.736) TCGA-CM-6678-01 10 25288439 25288439 G A ENKUR Silent p.D38D 0.19 TCGA-CM-6678-01 10 44112649 44112649 A G ZNF485 Silent p.K386K 0.09 TCGA-CM-6678-01 10 53822352 53822352 T C PRKG1 Missense_Mutation p.L299S 0.24 deleterious(0.01) possibly_damaging(0.842) TCGA-CM-6678-01 10 70451486 70451486 C T TET1 Missense_Mutation p.A2109V 0.40 deleterious(0) possibly_damaging(0.906) TCGA-CM-6678-01 11 108380818 108380818 G A EXPH5 Silent p.L1806L 0.38 TCGA-CM-6678-01 11 112071425 112071425 T C BCO2 Missense_Mutation p.F319L 0.33 tolerated(0.27) benign(0.02) TCGA-CM-6678-01 11 6292324 6292324 C T CCKBR Missense_Mutation p.R299C 0.19 deleterious(0) possibly_damaging(0.901) TCGA-CM-6678-01 11 65792739 65792739 C T CATSPER1 Missense_Mutation p.R371H 0.21 tolerated(1) benign(0.001) TCGA-CM-6678-01 11 8190440 8190440 G A RIC3 Missense_Mutation p.R33W 0.18 deleterious(0) possibly_damaging(0.885) TCGA-CM-6678-01 11 92507224 92507224 G A FAT3 Missense_Mutation p.A1405T 0.18 benign(0.011) TCGA-CM-6678-01 12 126138327 126138327 C T TMEM132B Nonsense_Mutation p.Q770* 0.23 TCGA-CM-6678-01 12 129190722 129190722 C T TMEM132C Missense_Mutation p.T1070M 0.35 tolerated(0.18) possibly_damaging(0.888) TCGA-CM-6678-01 12 129431953 129431953 G A GLT1D1 Missense_Mutation p.A164T 0.21 deleterious(0.01) possibly_damaging(0.695) TCGA-CM-6678-01 12 133245438 133245438 C T POLE Missense_Mutation p.G628R 0.21 deleterious(0) probably_damaging(0.999) TCGA-CM-6678-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.43 deleterious(0) benign(0.361) TCGA-CM-6678-01 12 5153695 5153695 G A KCNA5 Missense_Mutation p.G128R 0.18 deleterious(0) probably_damaging(1) TCGA-CM-6678-01 12 65720665 65720665 C T MSRB3 Missense_Mutation p.R53W 0.27 deleterious(0) probably_damaging(0.999) TCGA-CM-6678-01 12 6946221 6946221 G T LEPREL2 Nonsense_Mutation p.E510* 0.36 TCGA-CM-6678-01 12 72969158 72969158 G A TRHDE Missense_Mutation p.R707Q 0.10 tolerated(0.47) benign(0.09) TCGA-CM-6678-01 12 82752109 82752109 T C CCDC59 Missense_Mutation p.E16G 0.08 tolerated(1) benign(0) TCGA-CM-6678-01 13 114113636 114113636 C T DCUN1D2 Missense_Mutation p.D231N 0.21 deleterious(0.01) possibly_damaging(0.551) TCGA-CM-6678-01 13 114307723 114307723 C T ATP4B Missense_Mutation p.G90R 0.42 deleterious(0) probably_damaging(1) TCGA-CM-6678-01 13 19748187 19748187 C T TUBA3C Missense_Mutation p.R390H 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.879) TCGA-CM-6678-01 14 103412950 103412950 T C CDC42BPB Silent p.E1201E 0.14 TCGA-CM-6678-01 14 105614206 105614206 C A JAG2 Silent p.L756L 0.23 TCGA-CM-6678-01 14 106791304 106791304 G A IGHV3-30 Nonsense_Mutation p.Q18* 0.13 TCGA-CM-6678-01 14 20215645 20215645 C A OR4Q3 Missense_Mutation p.S20Y 0.19 deleterious(0.02) benign(0.006) TCGA-CM-6678-01 14 32560044 32560045 - TTA ARHGAP5 In_Frame_Ins p.L57_S58insI 0.22 TCGA-CM-6678-01 14 35245352 35245352 G A BAZ1A Missense_Mutation p.S869F 0.46 deleterious(0.04) probably_damaging(0.962) TCGA-CM-6678-01 14 86092026 86092026 G T FLRT2 3'UTR 0.08 TCGA-CM-6678-01 14 94505437 94505437 G A OTUB2 Intron 0.62 TCGA-CM-6678-01 15 29346935 29346935 C T APBA2 Missense_Mutation p.S283L 0.32 deleterious_low_confidence(0) benign(0.152) TCGA-CM-6678-01 15 48493738 48493738 G A CTXN2 Missense_Mutation p.A81T 0.30 tolerated_low_confidence(0.07) probably_damaging(0.948) TCGA-CM-6678-01 15 50223452 50223452 G A ATP8B4 Silent p.A502A 0.37 TCGA-CM-6678-01 16 25235709 25235709 G A AQP8 Nonsense_Mutation p.W138* 0.14 TCGA-CM-6678-01 16 50785685 50785685 C T CYLD Silent p.V225V 0.33 TCGA-CM-6678-01 16 58608966 58608966 C T CNOT1 Missense_Mutation p.R591H 0.23 deleterious(0) probably_damaging(0.999) TCGA-CM-6678-01 17 10543075 10543075 C A MYH3 Silent p.L909L 0.44 TCGA-CM-6678-01 17 11701103 11701103 C T DNAH9 Missense_Mutation p.R2805C 0.12 benign(0.005) TCGA-CM-6678-01 17 35298006 35298006 C T LHX1 Missense_Mutation p.A166V 0.25 tolerated(0.31) benign(0.029) TCGA-CM-6678-01 17 39553662 39553662 A C KRT31 Missense_Mutation p.C44G 0.31 tolerated(0.33) benign(0.005) TCGA-CM-6678-01 17 40120328 40120328 G A CNP Silent p.S82S 0.31 TCGA-CM-6678-01 17 5118275 5118275 C T SCIMP Silent p.S76S 0.25 TCGA-CM-6678-01 18 73000040 73000040 A G TSHZ1 Missense_Mutation p.N848S 0.33 deleterious(0) probably_damaging(0.998) TCGA-CM-6678-01 19 12963047 12963047 G A MAST1 Missense_Mutation p.R332H 0.54 deleterious(0) probably_damaging(0.994) TCGA-CM-6678-01 19 13246155 13246155 G A NACC1 Missense_Mutation p.R45Q 0.39 deleterious(0.02) possibly_damaging(0.56) TCGA-CM-6678-01 19 19655476 19655476 C T CILP2 Missense_Mutation p.R708C 0.35 deleterious(0) probably_damaging(0.939) TCGA-CM-6678-01 19 22157406 22157406 C A ZNF208 Missense_Mutation p.V144L 0.09 tolerated(0.33) benign(0.017) TCGA-CM-6678-01 19 30936614 30936614 G T ZNF536 Silent p.P715P 0.18 TCGA-CM-6678-01 19 36334480 36334480 C T NPHS1 Missense_Mutation p.R743H 0.44 tolerated(0.07) possibly_damaging(0.532) TCGA-CM-6678-01 19 36499479 36499479 G A SYNE4 Silent p.P35P 0.47 TCGA-CM-6678-01 19 40319078 40319078 G A DYRK1B Silent p.C222C 0.23 TCGA-CM-6678-01 19 46269197 46269197 G A SIX5 Silent p.S594S 0.33 TCGA-CM-6678-01 19 48024475 48024475 C T ZNF541 3'UTR 0.16 TCGA-CM-6678-01 19 48879561 48879561 A G SYNGR4 Missense_Mutation p.M231V 0.10 deleterious_low_confidence(0) benign(0.139) TCGA-CM-6678-01 19 52222515 52222515 G A HAS1 Missense_Mutation p.R216C 0.32 deleterious(0) probably_damaging(0.995) TCGA-CM-6678-01 19 53014622 53014622 C T ZNF578 Missense_Mutation p.L330F 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-CM-6678-01 19 55175848 55175848 C T LILRB4 Silent p.H189H 0.32 TCGA-CM-6678-01 19 56274095 56274095 G A RFPL4A Missense_Mutation p.V140I 0.31 tolerated(0.09) benign(0.303) TCGA-CM-6678-01 19 58213706 58213706 A G ZNF154 Missense_Mutation p.L204P 0.27 deleterious(0) probably_damaging(0.999) TCGA-CM-6678-01 19 8183804 8183804 G A FBN3 Missense_Mutation p.T1105M 0.31 tolerated(0.06) benign(0.054) TCGA-CM-6678-01 1 118530784 118530784 C T SPAG17 Silent p.T1855T 0.29 TCGA-CM-6678-01 1 145293496 145293496 A G NBPF10 Missense_Mutation p.K31E 0.11 benign(0.236) TCGA-CM-6678-01 1 147091802 147091802 G A BCL9 Missense_Mutation p.G614D 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-CM-6678-01 1 159505418 159505418 C A OR10J5 Missense_Mutation p.C127F 0.18 deleterious(0) probably_damaging(0.999) TCGA-CM-6678-01 1 166039573 166039573 G A FAM78B Missense_Mutation p.P231S 0.36 tolerated(0.81) benign(0.007) TCGA-CM-6678-01 1 176708826 176708826 T C PAPPA2 Missense_Mutation p.V1288A 0.08 tolerated(0.55) benign(0.001) TCGA-CM-6678-01 1 190067434 190067434 C T BRINP3 Missense_Mutation p.S672N 0.39 deleterious(0) probably_damaging(0.986) TCGA-CM-6678-01 1 197073907 197073907 C T ASPM Missense_Mutation p.V1492I 0.18 tolerated(0.94) benign(0.116) TCGA-CM-6678-01 1 203682364 203682364 G A ATP2B4 Silent p.K761K 0.32 TCGA-CM-6678-01 1 227261684 227261684 C T CDC42BPA Silent p.A872A 0.29 TCGA-CM-6678-01 1 249143705 249143705 T C ZNF672 3'UTR 0.37 TCGA-CM-6678-01 1 45810997 45810997 C T TESK2 Missense_Mutation p.G411S 0.19 deleterious(0) probably_damaging(0.996) TCGA-CM-6678-01 1 53925258 53925258 C T DMRTB1 Silent p.S44S 0.24 TCGA-CM-6678-01 1 60106977 60106977 C T FGGY Missense_Mutation p.P416L 0.27 tolerated_low_confidence(0.27) benign(0) TCGA-CM-6678-01 1 65690525 65690525 G A AK4 Missense_Mutation p.V177M 0.33 tolerated(0.1) benign(0.04) TCGA-CM-6678-01 1 79387335 79387335 G T ELTD1 Missense_Mutation p.T407K 0.27 deleterious(0) probably_damaging(1) TCGA-CM-6678-01 1 91781371 91781371 C T HFM1 Splice_Site p.X1047_splice 0.29 TCGA-CM-6678-01 20 49626566 49626566 C T KCNG1 Missense_Mutation p.V104M 0.37 deleterious(0.01) possibly_damaging(0.714) TCGA-CM-6678-01 20 50418938 50418938 G A SALL4 Missense_Mutation p.R4C 0.39 deleterious(0.01) benign(0.058) TCGA-CM-6678-01 21 47977533 47977533 C T DIP2A Missense_Mutation p.P1222L 0.29 deleterious(0) benign(0.098) TCGA-CM-6678-01 22 44229606 44229606 C T SULT4A1 Missense_Mutation p.G173S 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-CM-6678-01 2 125555801 125555801 A T CNTNAP5 Missense_Mutation p.I1040F 0.08 deleterious(0) possibly_damaging(0.824) TCGA-CM-6678-01 2 140990744 140990744 G T LRP1B 3'UTR 0.59 TCGA-CM-6678-01 2 165986559 165986559 C T SCN3A Missense_Mutation p.R938H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CM-6678-01 2 196756457 196756457 G A DNAH7 Silent p.Y1656Y 0.30 TCGA-CM-6678-01 2 198338750 198338750 A G COQ10B 3'UTR 0.40 TCGA-CM-6678-01 2 228882999 228882999 G A SPHKAP Silent p.S857S 0.56 TCGA-CM-6678-01 2 230456366 230456366 G A DNER Missense_Mutation p.T172M 0.68 deleterious(0.02) possibly_damaging(0.875) TCGA-CM-6678-01 2 241404521 241404521 G A GPC1 Missense_Mutation p.D388N 0.79 tolerated(0.06) benign(0.052) TCGA-CM-6678-01 2 24244534 24244534 T C MFSD2B Missense_Mutation p.I233T 0.08 tolerated(0.06) benign(0.137) TCGA-CM-6678-01 2 27459314 27459314 T C CAD Missense_Mutation p.Y1413H 0.10 deleterious(0) probably_damaging(0.995) TCGA-CM-6678-01 2 3482621 3482621 T C TRAPPC12 Missense_Mutation p.F628L 0.14 tolerated(0.33) benign(0.357) TCGA-CM-6678-01 2 5834583 5834583 C T SOX11 3'UTR 0.36 TCGA-CM-6678-01 2 61414905 61414905 C T AHSA2 3'UTR 0.67 TCGA-CM-6678-01 2 9514980 9514980 C T ASAP2 Silent p.C551C 0.46 TCGA-CM-6678-01 3 101117802 101117802 C T SENP7 Missense_Mutation p.D194N 0.25 tolerated(0.19) benign(0.049) TCGA-CM-6678-01 3 154898238 154898238 G A MME Missense_Mutation p.R748Q 0.22 deleterious(0.01) benign(0.204) TCGA-CM-6678-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.31 deleterious(0.04) probably_damaging(0.96) TCGA-CM-6678-01 3 180326573 180326573 C T TTC14 Missense_Mutation p.R459C 0.19 deleterious(0) unknown(0) TCGA-CM-6678-01 3 28454726 28454726 A C ZCWPW2 Missense_Mutation p.E56A 0.21 deleterious(0.04) benign(0.345) TCGA-CM-6678-01 3 48600436 48600436 C T UCN2 Missense_Mutation p.R41Q 0.27 tolerated(0.29) benign(0) TCGA-CM-6678-01 3 51430137 51430137 G A RBM15B Missense_Mutation p.R436Q 0.36 deleterious(0.02) benign(0.287) TCGA-CM-6678-01 3 52396478 52396478 G A DNAH1 Silent p.P1685P 0.13 TCGA-CM-6678-01 3 63981740 63981740 T C ATXN7 Missense_Mutation p.S748P 0.10 deleterious(0.04) benign(0.012) TCGA-CM-6678-01 4 10492124 10492124 T G CLNK Silent p.P418P 0.20 TCGA-CM-6678-01 4 155506463 155506463 G A FGA Intron 0.38 TCGA-CM-6678-01 4 165878840 165878840 A G FAM218A 3'UTR 0.25 TCGA-CM-6678-01 4 1936968 1936968 G C WHSC1 Silent p.T551T 0.33 TCGA-CM-6678-01 5 112174112 112174112 G T APC Nonsense_Mutation p.E941* 0.22 TCGA-CM-6678-01 5 112175596 112175597 - AG APC Frame_Shift_Ins p.S1436Rfs*38 0.32 TCGA-CM-6678-01 5 128983575 128983575 C T ADAMTS19 Missense_Mutation p.R658C 0.18 deleterious(0) probably_damaging(1) TCGA-CM-6678-01 5 140188701 140188701 G A PCDHA4 Silent p.P643P 0.43 TCGA-CM-6678-01 5 140249483 140249483 C T PCDHA11 Silent p.N265N 0.21 TCGA-CM-6678-01 5 140256446 140256446 C T PCDHA12 Silent p.F463F 0.24 TCGA-CM-6678-01 5 140501733 140501733 G T PCDHB4 Silent p.L51L 0.16 TCGA-CM-6678-01 5 140503026 140503026 C T PCDHB4 Silent p.N482N 0.23 TCGA-CM-6678-01 5 140558669 140558669 G T PCDHB8 Missense_Mutation p.A352S 0.04 tolerated_low_confidence(1) benign(0) TCGA-CM-6678-01 5 140573817 140573817 G A PCDHB10 Silent p.P564P 0.31 TCGA-CM-6678-01 5 140782734 140782734 C T PCDHGA9 Missense_Mutation p.T72M 0.28 tolerated_low_confidence(0.07) possibly_damaging(0.458) TCGA-CM-6678-01 5 149677971 149677971 C T ARSI Silent p.T172T 0.17 TCGA-CM-6678-01 5 70805512 70805512 A T BDP1 Missense_Mutation p.I865F 0.49 tolerated(0.08) benign(0.331) TCGA-CM-6678-01 5 7789868 7789868 C T ADCY2 Silent p.P861P 0.65 TCGA-CM-6678-01 5 90103544 90103544 G A GPR98 Missense_Mutation p.A4988T 0.26 possibly_damaging(0.811) TCGA-CM-6678-01 5 93999477 93999477 G A ANKRD32 Missense_Mutation p.R411K 0.21 deleterious(0.01) probably_damaging(0.917) TCGA-CM-6678-01 6 108502849 108502849 A C NR2E1 Missense_Mutation p.H330P 0.29 tolerated(0.09) possibly_damaging(0.657) TCGA-CM-6678-01 6 146997512 146997512 A C ADGB Missense_Mutation p.K384T 0.38 tolerated(0.11) probably_damaging(0.991) TCGA-CM-6678-01 6 152722303 152722304 - T SYNE1 Frame_Shift_Ins p.N2333Kfs*2 0.26 TCGA-CM-6678-01 6 159653117 159653117 C A FNDC1 Missense_Mutation p.L525I 0.26 deleterious_low_confidence(0.02) unknown(0) TCGA-CM-6678-01 6 159677660 159677660 C T FNDC1 Missense_Mutation p.T1724M 0.30 deleterious(0) probably_damaging(0.999) TCGA-CM-6678-01 6 160328641 160328641 G A MAS1 Silent p.T218T 0.38 TCGA-CM-6678-01 6 161781185 161781185 G C PARK2 Missense_Mutation p.S407C 0.29 deleterious(0) probably_damaging(0.954) TCGA-CM-6678-01 6 31778966 31778966 C T HSPA1L Missense_Mutation p.V262M 0.30 tolerated_low_confidence(0.06) probably_damaging(0.919) TCGA-CM-6678-01 6 46839592 46839592 A G GPR116 Missense_Mutation p.F467L 0.08 deleterious(0) possibly_damaging(0.867) TCGA-CM-6678-01 6 49698883 49698883 T C CRISP3 Silent p.G224G 0.35 TCGA-CM-6678-01 7 103969380 103969380 C T LHFPL3 Silent p.N51N 0.15 TCGA-CM-6678-01 7 11676143 11676143 G A THSD7A Silent p.S212S 0.32 TCGA-CM-6678-01 7 121651472 121651472 A T PTPRZ1 Missense_Mutation p.D791V 0.20 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-CM-6678-01 7 122027153 122027153 C A CADPS2 Missense_Mutation p.C1080F 0.06 deleterious(0.05) probably_damaging(0.98) TCGA-CM-6678-01 7 135047877 135047877 C T CNOT4 Nonsense_Mutation p.W634* 0.47 TCGA-CM-6678-01 7 141619329 141619329 C T OR9A4 Silent p.N218N 0.25 TCGA-CM-6678-01 7 157985162 157985162 C T PTPRN2 Missense_Mutation p.E136K 0.08 tolerated(0.2) benign(0.004) TCGA-CM-6678-01 7 28843925 28843925 A G CREB5 Missense_Mutation p.H271R 0.43 tolerated(0.4) unknown(0) TCGA-CM-6678-01 7 30818138 30818138 C T FAM188B Missense_Mutation p.H52Y 0.36 deleterious(0) probably_damaging(0.99) TCGA-CM-6678-01 7 33020089 33020089 C T FKBP9 Missense_Mutation p.R273W 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-CM-6678-01 7 62752001 62752001 C T ZNF733P RNA 0.50 TCGA-CM-6678-01 7 6744803 6744804 - T ZNF12 Frame_Shift_Ins p.M1? 0.21 TCGA-CM-6678-01 7 82996794 82996794 T C SEMA3E 3'UTR 0.08 TCGA-CM-6678-01 7 86493759 86493759 G T GRM3 3'UTR 0.29 TCGA-CM-6678-01 7 95657604 95657604 C T DYNC1I1 Missense_Mutation p.R380W 0.26 deleterious(0) probably_damaging(0.998) TCGA-CM-6678-01 8 124265864 124265864 G A ZHX1 Missense_Mutation p.L775F 0.13 tolerated(0.06) benign(0.195) TCGA-CM-6678-01 8 68992730 68992730 G A PREX2 Silent p.S565S 0.70 TCGA-CM-6678-01 9 101759341 101759341 C T COL15A1 Silent p.I310I 0.08 TCGA-CM-6678-01 9 138012007 138012007 C T OLFM1 Missense_Mutation p.R463C 0.39 deleterious(0) possibly_damaging(0.689) TCGA-CM-6678-01 9 138662916 138662916 C T KCNT1 Silent p.P661P 0.39 TCGA-CM-6678-01 9 139690862 139690862 A G CCDC183 Missense_Mutation p.S5G 0.12 tolerated(0.36) benign(0.228) TCGA-CM-6678-01 9 25678503 25678503 G A TUSC1 5'UTR 0.09 TCGA-CM-6678-01 9 33470051 33470051 G A NOL6 Nonsense_Mutation p.R173* 0.29 TCGA-CM-6678-01 9 79119835 79119835 T G GCNT1 3'UTR 0.43 TCGA-CM-6678-01 9 84608288 84608288 C G SPATA31D1 Missense_Mutation p.T968S 0.19 tolerated(0.69) possibly_damaging(0.801) TCGA-CM-6678-01 9 990962 990962 G A DMRT3 Missense_Mutation p.R459K 0.21 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-CM-6678-01 X 100506064 100506064 G A DRP2 Silent p.K619K 0.14 TCGA-CM-6678-01 X 107037836 107037836 G T NCBP2L Missense_Mutation p.G129V 0.10 deleterious(0) probably_damaging(0.999) TCGA-CM-6678-01 X 108780177 108780177 G A NXT2 Missense_Mutation p.R36Q 0.46 tolerated_low_confidence(0.44) benign(0.002) TCGA-CM-6678-01 X 114424633 114424633 G A RBMXL3 Missense_Mutation p.R210Q 0.39 tolerated_low_confidence(0.34) benign(0.253) TCGA-CM-6678-01 X 118602569 118602569 C T SLC25A5 Missense_Mutation p.R31W 0.37 tolerated(0.09) benign(0.028) TCGA-CM-6678-01 X 125686702 125686702 G A DCAF12L1 5'UTR 0.33 TCGA-CM-6678-01 X 13835081 13835081 C T GPM6B 5'UTR 0.37 TCGA-CM-6678-01 X 15301662 15301662 G T ASB11 Missense_Mutation p.P313T 0.19 deleterious(0) probably_damaging(1) TCGA-CM-6678-01 X 15349975 15349976 GT C PIGA Frame_Shift_Del p.Y26* 0.18 TCGA-CM-6678-01 X 153716184 153716184 C T SLC10A3 Missense_Mutation p.G366S 0.34 deleterious(0) probably_damaging(0.951) TCGA-CM-6678-01 X 153774345 153774345 C T G6PD Missense_Mutation p.R39Q 0.21 tolerated_low_confidence(0.21) benign(0.017) TCGA-CM-6678-01 X 34961022 34961022 C T FAM47B Missense_Mutation p.P25L 0.35 tolerated(0.31) benign(0.242) TCGA-CM-6678-01 X 37545304 37545304 G A XK Silent p.S30S 0.32 TCGA-CM-6678-01 X 47428131 47428132 - CAACATC ARAF Frame_Shift_Ins p.L367Qfs*22 0.19 TCGA-CM-6678-01 X 48209519 48209519 C T SSX3 Silent p.S123S 0.12 TCGA-CM-6678-01 X 50376606 50376606 G A SHROOM4 Missense_Mutation p.R823C 0.22 tolerated(0.19) benign(0.003) TCGA-CM-6678-01 X 70345909 70345909 C T MED12 Nonsense_Mutation p.R816* 0.16 TCGA-CM-6678-01 X 72667134 72667134 G A CDX4 Silent p.P15P 0.44 TCGA-CM-6678-01 X 85302517 85302517 G A CHM Missense_Mutation p.S7L 0.17 deleterious(0.01) possibly_damaging(0.573) TCGA-CM-6678-01 X 90693263 90693263 C T PABPC5 3'UTR 0.19 TCGA-CM-6678-01 X 9864507 9864507 C T SHROOM2 Silent p.N853N 0.18 TCGA-CM-6679-01 10 27405252 27405252 T C YME1L1 Missense_Mutation p.D638G 0.10 deleterious(0) probably_damaging(1) TCGA-CM-6679-01 10 86131056 86131056 A G CCSER2 Missense_Mutation p.N83S 0.10 tolerated(0.12) benign(0.009) TCGA-CM-6679-01 11 122830103 122830103 G A C11orf63 Missense_Mutation p.E763K 0.22 deleterious(0) probably_damaging(0.996) TCGA-CM-6679-01 11 128354801 128354801 G A ETS1 Missense_Mutation p.T260I 0.13 tolerated(0.3) benign(0.016) TCGA-CM-6679-01 11 18762159 18762159 C T PTPN5 Silent p.A302A 0.14 TCGA-CM-6679-01 11 55653041 55653041 C T TRIM51 Missense_Mutation p.T46M 0.15 tolerated(0.27) benign(0.006) TCGA-CM-6679-01 11 95712436 95712436 G A MAML2 Silent p.L1049L 0.26 TCGA-CM-6679-01 11 9812157 9812157 C T SBF2 Missense_Mutation p.M1548I 0.07 tolerated(0.4) benign(0) TCGA-CM-6679-01 12 116418613 116418613 T G MED13L Missense_Mutation p.K1769T 0.22 deleterious(0) probably_damaging(0.998) TCGA-CM-6679-01 12 43822238 43822238 G A ADAMTS20 Missense_Mutation p.R1251C 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-CM-6679-01 12 48369159 48369159 C T COL2A1 Missense_Mutation p.R1276H 0.26 unknown(0) TCGA-CM-6679-01 12 52282383 52282383 T C ANKRD33 Silent p.L59L 0.13 TCGA-CM-6679-01 13 21562181 21562181 C T LATS2 Missense_Mutation p.V580I 0.07 deleterious(0.01) possibly_damaging(0.593) TCGA-CM-6679-01 13 25157685 25157685 A T RP11-556N21.1 RNA 0.25 TCGA-CM-6679-01 13 39432051 39432051 A G FREM2 Missense_Mutation p.M2366V 0.26 tolerated(0.6) benign(0) TCGA-CM-6679-01 14 20586318 20586318 G A OR4K17 Silent p.L251L 0.14 TCGA-CM-6679-01 14 21500202 21500202 A G TPPP2 Missense_Mutation p.K160R 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-CM-6679-01 15 76958122 76958122 A C SCAPER Silent p.L839L 0.31 TCGA-CM-6679-01 16 11367212 11367212 G A PRM3 Missense_Mutation p.R81W 0.43 tolerated_low_confidence(0.14) possibly_damaging(0.835) TCGA-CM-6679-01 16 23388522 23388525 AGAG - SCNN1B Frame_Shift_Del p.E438Pfs*17 0.47 TCGA-CM-6679-01 16 28507989 28507989 A G APOBR Missense_Mutation p.S543G 0.12 tolerated(0.84) benign(0.294) TCGA-CM-6679-01 16 48173147 48173147 G A ABCC12 Missense_Mutation p.A253V 0.19 tolerated(1) benign(0.001) TCGA-CM-6679-01 16 5094442 5094442 T C C16orf89 3'UTR 0.14 TCGA-CM-6679-01 16 70400637 70400637 G A DDX19A Missense_Mutation p.R298H 0.17 deleterious(0.05) benign(0.001) TCGA-CM-6679-01 17 1617239 1617239 C G TLCD2 5'Flank 0.29 TCGA-CM-6679-01 17 38031555 38031555 T C ZPBP2 Missense_Mutation p.Y253H 0.12 tolerated(0.33) benign(0.006) TCGA-CM-6679-01 17 48559533 48559533 C T RSAD1 Missense_Mutation p.R186C 0.54 deleterious(0.03) benign(0.022) TCGA-CM-6679-01 17 61905454 61905454 T C PSMC5 Intron 0.14 TCGA-CM-6679-01 17 71419647 71419647 G A SDK2 Missense_Mutation p.A592V 0.45 deleterious(0.03) probably_damaging(0.981) TCGA-CM-6679-01 17 72256323 72256323 A G TTYH2 Missense_Mutation p.H527R 0.40 tolerated(0.12) benign(0.013) TCGA-CM-6679-01 17 7578256 7578257 - C TP53 Frame_Shift_Ins p.E198Gfs*11 0.33 TCGA-CM-6679-01 17 80209305 80209305 G A CSNK1D Missense_Mutation p.R279C 0.33 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CM-6679-01 18 28609576 28609576 T A DSC3 Missense_Mutation p.T125S 0.23 tolerated(0.51) benign(0.069) TCGA-CM-6679-01 18 44173584 44173584 G A LOXHD1 Silent p.P470P 0.16 TCGA-CM-6679-01 18 61377451 61377451 C T SERPINB11 Silent p.N8N 0.24 TCGA-CM-6679-01 18 8784192 8784192 C T SOGA2 Missense_Mutation p.A361V 0.36 tolerated(1) benign(0.001) TCGA-CM-6679-01 19 15582836 15582836 G A PGLYRP2 Missense_Mutation p.P403L 0.24 deleterious(0) probably_damaging(0.997) TCGA-CM-6679-01 19 48024552 48024552 T C ZNF541 Missense_Mutation p.K1343E 0.23 deleterious(0) possibly_damaging(0.589) TCGA-CM-6679-01 19 9236833 9236833 G A OR7G3 Missense_Mutation p.T265I 0.10 tolerated(0.07) benign(0.027) TCGA-CM-6679-01 19 9406201 9406201 G T ZNF699 Missense_Mutation p.P627T 0.44 tolerated(0.09) benign(0.162) TCGA-CM-6679-01 1 110925500 110925500 A G SLC16A4 Missense_Mutation p.I59T 0.09 tolerated(0.54) benign(0.019) TCGA-CM-6679-01 1 118558645 118558645 T C SPAG17 Silent p.R1410R 0.08 TCGA-CM-6679-01 1 1268977 1268977 G A TAS1R3 Nonsense_Mutation p.W564* 0.28 TCGA-CM-6679-01 1 1404053 1404053 C T ATAD3C 3'UTR 0.41 TCGA-CM-6679-01 1 152286135 152286135 G A FLG Silent p.V409V 0.12 TCGA-CM-6679-01 1 152484234 152484234 G A LCE5A Missense_Mutation p.R75H 0.44 tolerated_low_confidence(0.55) unknown(0) TCGA-CM-6679-01 1 167086583 167086583 T C DUSP27 Missense_Mutation p.V75A 0.12 tolerated(0.57) benign(0.001) TCGA-CM-6679-01 1 172558967 172558967 A G SUCO Missense_Mutation p.N909S 0.16 tolerated(0.46) possibly_damaging(0.666) TCGA-CM-6679-01 1 179090986 179090986 T C ABL2 Missense_Mutation p.E235G 0.12 deleterious(0.02) possibly_damaging(0.816) TCGA-CM-6679-01 1 19430655 19430655 T C UBR4 Missense_Mutation p.K4275R 0.09 possibly_damaging(0.899) TCGA-CM-6679-01 1 204956619 204956619 T C NFASC Silent p.P848P 0.09 TCGA-CM-6679-01 1 230805248 230805248 T C COG2 Silent p.V247V 0.09 TCGA-CM-6679-01 1 233750155 233750155 G A KCNK1 Missense_Mutation p.G80S 0.33 tolerated(0.59) benign(0) TCGA-CM-6679-01 1 24194558 24194558 G A FUCA1 Silent p.G73G 0.08 TCGA-CM-6679-01 1 32568197 32568197 C T TMEM39B Missense_Mutation p.R468W 0.19 deleterious(0) probably_damaging(1) TCGA-CM-6679-01 1 37271784 37271784 G A GRIK3 Silent p.Y745Y 0.29 TCGA-CM-6679-01 20 62201838 62201838 G A HELZ2 Intron 0.12 TCGA-CM-6679-01 20 62737451 62737451 C T NPBWR2 Missense_Mutation p.R245H 0.19 tolerated(0.83) benign(0.001) TCGA-CM-6679-01 21 32496857 32496857 G A TIAM1 Missense_Mutation p.P1430L 0.58 deleterious(0.05) probably_damaging(0.954) TCGA-CM-6679-01 21 34929528 34929528 C T SON Missense_Mutation p.P2076L 0.12 unknown(0) TCGA-CM-6679-01 21 42647415 42647415 C T BACE2 Missense_Mutation p.A474V 0.26 tolerated(1) benign(0.194) TCGA-CM-6679-01 21 47551997 47551997 C T COL6A2 Missense_Mutation p.T864M 0.79 tolerated(0.07) possibly_damaging(0.773) TCGA-CM-6679-01 22 22735604 22735604 C T IGLV1-44 Nonsense_Mutation p.R81* 0.18 TCGA-CM-6679-01 22 45574746 45574746 A G NUP50 Missense_Mutation p.E323G 0.08 tolerated(0.08) benign(0.018) TCGA-CM-6679-01 22 50278297 50278297 G A ZBED4 Silent p.R329R 0.50 TCGA-CM-6679-01 22 50721771 50721771 A G PLXNB2 Missense_Mutation p.F892L 0.14 deleterious(0) benign(0.122) TCGA-CM-6679-01 2 107446653 107446653 T G ST6GAL2 Missense_Mutation p.Q396P 0.38 probably_damaging(0.944) TCGA-CM-6679-01 2 179454111 179454111 C G TTN Missense_Mutation p.V20781L 0.15 TCGA-CM-6679-01 2 179641337 179641337 G A TTN Missense_Mutation p.R1752C 0.18 TCGA-CM-6679-01 2 216177199 216177200 - A ATIC Intron 0.15 TCGA-CM-6679-01 2 231118030 231118030 G A SP140 Splice_Site p.X353_splice 0.33 TCGA-CM-6679-01 2 42180241 42180241 G A C2orf91 Silent p.S65S 0.13 TCGA-CM-6679-01 2 48573415 48573415 T A FOXN2 Missense_Mutation p.I21N 0.25 tolerated(0.37) benign(0.009) TCGA-CM-6679-01 2 51149818 51149818 C T NRXN1 Silent p.A299A 0.14 TCGA-CM-6679-01 2 55119629 55119629 G A EML6 Missense_Mutation p.V860I 0.11 tolerated(0.42) benign(0.001) TCGA-CM-6679-01 2 74086467 74086467 C T STAMBP Silent p.A364A 0.13 TCGA-CM-6679-01 2 95713737 95713737 T A MAL Missense_Mutation p.S43T 0.17 deleterious(0.02) possibly_damaging(0.794) TCGA-CM-6679-01 3 111439691 111439691 G T PLCXD2 Intron 0.09 TCGA-CM-6679-01 3 143704492 143704492 G A C3orf58 Silent p.A255A 0.32 TCGA-CM-6679-01 3 194409623 194409623 C A FAM43A 3'UTR 0.45 TCGA-CM-6679-01 4 103517467 103517467 A G NFKB1 Silent p.K491K 0.11 TCGA-CM-6679-01 4 171010856 171010856 A G AADAT 5'UTR 0.13 TCGA-CM-6679-01 4 74005454 74005454 T C ANKRD17 Missense_Mutation p.Q960R 0.09 possibly_damaging(0.456) TCGA-CM-6679-01 4 85701351 85701351 T C WDFY3 Silent p.E1425E 0.08 TCGA-CM-6679-01 5 112170863 112170863 G A APC Splice_Site p.X653_splice 0.34 TCGA-CM-6679-01 5 154315427 154315427 A G GEMIN5 Silent p.P161P 0.25 TCGA-CM-6679-01 6 12120878 12120878 T C HIVEP1 Missense_Mutation p.Y284H 0.08 tolerated(0.51) benign(0.004) TCGA-CM-6679-01 6 127771316 127771316 T A KIAA0408 Missense_Mutation p.K106I 0.11 tolerated(0.14) possibly_damaging(0.7) TCGA-CM-6679-01 6 146264384 146264384 T C SHPRH Silent p.E711E 0.15 TCGA-CM-6679-01 6 152477049 152477049 G A SYNE1 Silent p.L7992L 0.44 TCGA-CM-6679-01 6 152651968 152651968 G A SYNE1 Missense_Mutation p.L4618F 0.55 probably_damaging(0.999) TCGA-CM-6679-01 6 158489745 158489745 A G SYNJ2 Missense_Mutation p.N595S 0.09 deleterious(0) probably_damaging(0.986) TCGA-CM-6679-01 6 24436908 24436908 C A GPLD1 Missense_Mutation p.G752W 0.27 deleterious(0) probably_damaging(1) TCGA-CM-6679-01 6 29395222 29395222 G A OR11A1 Missense_Mutation p.A66V 0.50 tolerated(0.18) benign(0.004) TCGA-CM-6679-01 6 42824904 42824904 T C GLTSCR1L Silent p.D728D 0.19 TCGA-CM-6679-01 6 43306594 43306594 T A ZNF318 Silent p.P1714P 0.15 TCGA-CM-6679-01 7 129940662 129940662 T C CPA4 Silent p.L98L 0.11 TCGA-CM-6679-01 7 23391129 23391129 C T IGF2BP3 Missense_Mutation p.A160T 0.11 tolerated(0.35) benign(0.004) TCGA-CM-6679-01 7 98608685 98608685 A G TRRAP Missense_Mutation p.D3636G 0.08 possibly_damaging(0.595) TCGA-CM-6679-01 8 42023095 42023095 A G AP3M2 Intron 0.12 TCGA-CM-6679-01 8 42196126 42196126 C A POLB 5'UTR 0.19 TCGA-CM-6679-01 8 61743032 61743032 A G CHD7 Missense_Mutation p.N1225S 0.37 probably_damaging(0.944) TCGA-CM-6679-01 8 74526075 74526075 C A STAU2 Silent p.A265A 0.29 TCGA-CM-6679-01 8 90802528 90802528 A G RIPK2 Missense_Mutation p.K503E 0.09 deleterious(0) benign(0.297) TCGA-CM-6679-01 8 91953053 91953053 G A NECAB1 Missense_Mutation p.E263K 0.13 tolerated(0.4) possibly_damaging(0.829) TCGA-CM-6679-01 9 107581161 107581161 C T ABCA1 Missense_Mutation p.R1082H 0.31 deleterious(0) probably_damaging(0.996) TCGA-CM-6679-01 9 19305480 19305480 C T DENND4C Missense_Mutation p.P481L 0.14 deleterious(0) probably_damaging(1) TCGA-CM-6679-01 X 1584751 1584751 C T P2RY8 Missense_Mutation p.R234H 0.53 tolerated(0.09) possibly_damaging(0.864) TCGA-CM-6679-01 X 72297936 72297936 C T PABPC1L2A 3'UTR 0.30 TCGA-CM-6680-01 10 12940451 12940451 G A CCDC3 Missense_Mutation p.R260W 0.48 tolerated_low_confidence(0.14) possibly_damaging(0.736) TCGA-CM-6680-01 10 13276280 13276280 G A UCMA 5'UTR 0.47 TCGA-CM-6680-01 10 29578104 29578104 G A LYZL1 Missense_Mutation p.A20T 0.27 deleterious_low_confidence(0.02) benign(0) TCGA-CM-6680-01 10 50959882 50959882 C T OGDHL Missense_Mutation p.R247H 0.29 tolerated(0.12) benign(0.189) TCGA-CM-6680-01 10 75260501 75260501 G A USP54 Silent p.L1469L 0.31 TCGA-CM-6680-01 10 76857569 76857569 G A DUSP13 Missense_Mutation p.P75L 0.26 tolerated(0.17) benign(0.402) TCGA-CM-6680-01 10 95791031 95791031 G A PLCE1 Silent p.A76A 0.32 TCGA-CM-6680-01 11 105880187 105880187 C A MSANTD4 3'UTR 0.45 TCGA-CM-6680-01 11 30930639 30930639 C A DCDC1 Missense_Mutation p.A1258S 0.25 tolerated(0.2) benign(0) TCGA-CM-6680-01 11 36511763 36511763 C T TRAF6 Silent p.P398P 0.39 TCGA-CM-6680-01 11 46897008 46897008 T C LRP4 Silent p.L1308L 0.14 TCGA-CM-6680-01 11 62435170 62435170 G A C11orf48 Silent p.N121N 0.25 TCGA-CM-6680-01 11 6479367 6479367 G A TRIM3 Silent p.H97H 0.36 TCGA-CM-6680-01 11 73106542 73106542 G A RELT 3'UTR 0.50 TCGA-CM-6680-01 12 102043107 102043107 A G MYBPC1 Silent p.K397K 0.34 TCGA-CM-6680-01 12 10373228 10373228 A G GABARAPL1 Intron 0.08 TCGA-CM-6680-01 12 113871991 113871991 G T SDSL Missense_Mutation p.W136L 0.37 tolerated(0.23) benign(0.012) TCGA-CM-6680-01 12 117672446 117672446 G A NOS1 Silent p.I1087I 0.40 TCGA-CM-6680-01 12 121432078 121432078 A G HNF1A Silent p.E275E 0.08 TCGA-CM-6680-01 12 129566485 129566485 G A TMEM132D Missense_Mutation p.T581M 0.36 deleterious(0) probably_damaging(0.994) TCGA-CM-6680-01 12 6559972 6559973 - T CD27 Intron 0.39 TCGA-CM-6680-01 12 97073418 97073418 C T C12orf55 Silent p.D1868D 0.30 TCGA-CM-6680-01 13 20593952 20593952 T C ZMYM2 Intron 0.14 TCGA-CM-6680-01 13 24330737 24330737 C T MIPEP Missense_Mutation p.R664H 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-CM-6680-01 13 25274960 25274960 C T ATP12A Missense_Mutation p.P600L 0.34 deleterious(0) probably_damaging(1) TCGA-CM-6680-01 13 58207338 58207338 G T PCDH17 Nonsense_Mutation p.E220* 0.44 TCGA-CM-6680-01 14 29261355 29261355 A G C14orf23 Missense_Mutation p.Y131C 0.35 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-CM-6680-01 14 94044294 94044294 G A UNC79 Missense_Mutation p.R596H 0.23 tolerated(0.31) benign(0.003) TCGA-CM-6680-01 14 94088531 94088531 C T UNC79 Missense_Mutation p.T1474M 0.31 tolerated_low_confidence(0.32) benign(0.001) TCGA-CM-6680-01 15 50546816 50546816 T G HDC Missense_Mutation p.K163Q 0.35 tolerated(0.08) probably_damaging(0.997) TCGA-CM-6680-01 15 65681167 65681167 A G IGDCC4 Missense_Mutation p.W896R 0.09 deleterious(0) probably_damaging(1) TCGA-CM-6680-01 16 9858161 9858161 G A GRIN2A Silent p.H1080H 0.30 TCGA-CM-6680-01 17 26960104 26960104 G A KIAA0100 Missense_Mutation p.P1221S 0.09 deleterious(0.05) possibly_damaging(0.656) TCGA-CM-6680-01 17 27001597 27001597 T C SUPT6H Missense_Mutation p.I104T 0.37 deleterious(0) unknown(0) TCGA-CM-6680-01 17 3788912 3788912 C T CAMKK1 Missense_Mutation p.D24N 0.41 tolerated_low_confidence(0.14) benign(0.006) TCGA-CM-6680-01 17 4646746 4646746 C T ZMYND15 Silent p.R431R 0.39 TCGA-CM-6680-01 17 5284763 5284763 T C RABEP1 Missense_Mutation p.V817A 0.10 deleterious(0.04) benign(0.247) TCGA-CM-6680-01 17 57814816 57814816 T C VMP1 Missense_Mutation p.L72S 0.41 deleterious(0) possibly_damaging(0.891) TCGA-CM-6680-01 17 61949718 61949718 G A CSH2 Intron 0.36 TCGA-CM-6680-01 17 76118737 76118737 C T TMC6 Silent p.T392T 0.27 TCGA-CM-6680-01 18 48591901 48591901 A G SMAD4 Missense_Mutation p.D355G 0.69 deleterious(0) probably_damaging(1) TCGA-CM-6680-01 19 16629958 16629958 C T CHERP 3'UTR 0.33 TCGA-CM-6680-01 19 17343290 17343290 C T NR2F6 Silent p.A362A 0.33 TCGA-CM-6680-01 19 33168389 33168389 G A RGS9BP 3'UTR 0.43 TCGA-CM-6680-01 19 35786621 35786621 G A MAG Missense_Mutation p.R51Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-CM-6680-01 19 51274409 51274409 A C GPR32 Missense_Mutation p.K184N 0.18 tolerated(0.58) benign(0.036) TCGA-CM-6680-01 19 54969119 54969119 G A LENG8 Missense_Mutation p.G614S 0.08 deleterious(0.02) probably_damaging(0.989) TCGA-CM-6680-01 19 902083 902083 C T R3HDM4 Missense_Mutation p.R40K 0.27 tolerated(0.17) benign(0.018) TCGA-CM-6680-01 1 109795259 109795259 C A CELSR2 Missense_Mutation p.T853N 0.30 deleterious(0) probably_damaging(0.999) TCGA-CM-6680-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.29 deleterious(0.01) benign(0.045) TCGA-CM-6680-01 1 147380164 147380164 G A GJA8 Missense_Mutation p.V28M 0.39 deleterious(0) probably_damaging(0.999) TCGA-CM-6680-01 1 147381178 147381178 G A GJA8 Missense_Mutation p.V366M 0.36 tolerated(0.08) possibly_damaging(0.592) TCGA-CM-6680-01 1 154517375 154517375 A G TDRD10 Missense_Mutation p.D301G 0.08 tolerated(0.06) possibly_damaging(0.709) TCGA-CM-6680-01 1 15766837 15766837 G A CTRC Missense_Mutation p.A28T 0.63 tolerated(0.37) benign(0.001) TCGA-CM-6680-01 1 186008902 186008902 T C HMCN1 Missense_Mutation p.V2024A 0.38 probably_damaging(0.993) TCGA-CM-6680-01 1 208215587 208215587 C T PLXNA2 Missense_Mutation p.R1381H 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-CM-6680-01 1 215793431 215793431 A G KCTD3 Missense_Mutation p.E640G 0.08 tolerated_low_confidence(0.08) benign(0.309) TCGA-CM-6680-01 1 31194265 31194265 G A MATN1 Missense_Mutation p.P143L 0.47 tolerated(0.43) benign(0.043) TCGA-CM-6680-01 1 32742001 32742001 C T LCK Missense_Mutation p.P232L 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-CM-6680-01 1 46095307 46095307 C T GPBP1L1 Missense_Mutation p.E405K 0.30 deleterious(0) probably_damaging(0.972) TCGA-CM-6680-01 1 52927207 52927207 T C ZCCHC11 Missense_Mutation p.D1070G 0.29 deleterious(0) probably_damaging(0.999) TCGA-CM-6680-01 1 87025657 87025658 - A CLCA4 Frame_Shift_Ins p.R70Kfs*13 0.26 TCGA-CM-6680-01 1 99358657 99358657 G T LPPR5 Missense_Mutation p.H313N 0.38 tolerated(0.1) benign(0.071) TCGA-CM-6680-01 20 45014807 45014807 T A ELMO2 Silent p.I211I 0.32 TCGA-CM-6680-01 20 50048747 50048747 T C NFATC2 Missense_Mutation p.Y860C 0.35 tolerated(0.08) benign(0.235) TCGA-CM-6680-01 21 36088829 36088829 G A CLIC6 3'UTR 0.41 TCGA-CM-6680-01 21 43241498 43241498 C T PRDM15 Missense_Mutation p.R1028H 0.32 tolerated(0.1) benign(0.126) TCGA-CM-6680-01 22 40283570 40283570 G C ENTHD1 Silent p.L61L 0.32 TCGA-CM-6680-01 2 179413083 179413083 A G TTN Silent p.V31090V 0.08 TCGA-CM-6680-01 2 191373862 191373862 C T TMEM194B 3'UTR 0.18 TCGA-CM-6680-01 2 218941176 218941176 T - RUFY4 Frame_Shift_Del p.E446Rfs*11 0.25 TCGA-CM-6680-01 2 220155267 220155267 C T PTPRN Missense_Mutation p.R954H 0.23 deleterious(0.02) benign(0.042) TCGA-CM-6680-01 2 68592423 68592423 A G PLEK 5'UTR 0.10 TCGA-CM-6680-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.37 deleterious(0.01) probably_damaging(0.964) TCGA-CM-6680-01 2 80136883 80136883 G A CTNNA2 Missense_Mutation p.R339Q 0.10 deleterious(0.03) benign(0.241) TCGA-CM-6680-01 3 123457877 123457877 C T MYLK Missense_Mutation p.R152H 0.27 deleterious(0.02) benign(0.38) TCGA-CM-6680-01 3 128369394 128369394 G C RPN1 Missense_Mutation p.L84V 0.48 tolerated(0.24) benign(0.074) TCGA-CM-6680-01 3 151056331 151056331 G A P2RY12 Silent p.S101S 0.28 TCGA-CM-6680-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.33 deleterious(0.02) probably_damaging(0.959) TCGA-CM-6680-01 3 185184657 185184657 C T MAP3K13 Nonsense_Mutation p.R517* 0.42 TCGA-CM-6680-01 3 49163892 49163892 C T LAMB2 Missense_Mutation p.G686D 0.35 deleterious(0.02) benign(0.04) TCGA-CM-6680-01 3 49764840 49764840 C T IP6K1 Silent p.E347E 0.39 TCGA-CM-6680-01 3 62459960 62459960 G T CADPS Missense_Mutation p.T1122N 0.37 tolerated(0.26) benign(0.403) TCGA-CM-6680-01 4 103682000 103682000 C T MANBA Missense_Mutation p.A18T 0.05 tolerated(0.44) unknown(0) TCGA-CM-6680-01 4 126373474 126373474 G A FAT4 Missense_Mutation p.R3768Q 0.32 benign(0.421) TCGA-CM-6680-01 4 156137552 156137552 A G NPY2R 3'UTR 0.44 TCGA-CM-6680-01 4 186544835 186544835 A G SORBS2 Missense_Mutation p.I679T 0.42 deleterious(0.02) possibly_damaging(0.802) TCGA-CM-6680-01 4 96141260 96141260 C T UNC5C Silent p.A392A 0.31 TCGA-CM-6680-01 5 112164616 112164616 C T APC Nonsense_Mutation p.R564* 0.28 TCGA-CM-6680-01 5 112176030 112176030 T - APC Frame_Shift_Del p.S1581Lfs*69 0.23 TCGA-CM-6680-01 5 112228452 112228452 G A ZRSR1 Missense_Mutation p.M372I 0.07 tolerated(0.11) benign(0.028) TCGA-CM-6680-01 5 140236812 140236812 G A PCDHA10 Silent p.P393P 0.23 TCGA-CM-6680-01 5 140725862 140725862 C T PCDHGA3 Silent p.S754S 0.28 TCGA-CM-6680-01 5 145616995 145616995 C T RBM27 Nonsense_Mutation p.R427* 0.42 TCGA-CM-6680-01 5 150945575 150945575 C T FAT2 Missense_Mutation p.R973Q 0.34 benign(0.015) TCGA-CM-6680-01 5 24487852 24487852 C T CDH10 Missense_Mutation p.D763N 0.33 tolerated(0.18) probably_damaging(0.989) TCGA-CM-6680-01 5 74137456 74137456 A G FAM169A Silent p.L16L 0.38 TCGA-CM-6680-01 5 878501 878501 C T BRD9 Missense_Mutation p.G414R 0.13 deleterious(0) probably_damaging(1) TCGA-CM-6680-01 5 89979834 89979834 G A GPR98 Silent p.A2032A 0.34 TCGA-CM-6680-01 6 102372584 102372584 C A GRIK2 Silent p.L619L 0.38 TCGA-CM-6680-01 6 153043002 153043002 T A MYCT1 Missense_Mutation p.S108T 0.40 tolerated(0.61) benign(0.019) TCGA-CM-6680-01 6 26271214 26271214 C T HIST1H3G Silent p.G133G 0.52 TCGA-CM-6680-01 6 27833496 27833497 GA - HIST1H2AL Frame_Shift_Del p.H124Pfs*11 0.34 TCGA-CM-6680-01 6 35454315 35454315 C T TEAD3 Missense_Mutation p.S42N 0.32 deleterious(0) probably_damaging(0.955) TCGA-CM-6680-01 6 74468697 74468697 C T CD109 Missense_Mutation p.T235I 0.35 deleterious(0.03) benign(0.126) TCGA-CM-6680-01 6 90009547 90009547 G A GABRR2 Missense_Mutation p.R51W 0.45 tolerated(0.25) benign(0.002) TCGA-CM-6680-01 7 103191624 103191624 G A RELN Silent p.H2064H 0.44 TCGA-CM-6680-01 7 47454785 47454785 C T TNS3 Missense_Mutation p.G165R 0.13 deleterious(0) probably_damaging(0.985) TCGA-CM-6680-01 7 86415745 86415745 G A GRM3 Missense_Mutation p.V213M 0.34 deleterious(0) probably_damaging(1) TCGA-CM-6680-01 7 86521048 86521048 C - KIAA1324L Frame_Shift_Del p.A1008Qfs*14 0.25 TCGA-CM-6680-01 8 131862034 131862034 G A ADCY8 Silent p.T742T 0.37 TCGA-CM-6680-01 8 23054702 23054702 C A TNFRSF10A Nonsense_Mutation p.E344* 0.35 TCGA-CM-6680-01 8 24256444 24256444 G A ADAMDEC1 Missense_Mutation p.G274R 0.31 tolerated(0.11) benign(0.17) TCGA-CM-6680-01 8 33451124 33451124 C T DUSP26 Silent p.S121S 0.38 TCGA-CM-6680-01 8 37698874 37698874 G A GPR124 Silent p.P1006P 0.26 TCGA-CM-6680-01 8 81888912 81888912 G A PAG1 Missense_Mutation p.A389V 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-CM-6680-01 8 92032432 92032432 G T TMEM55A Silent p.L105L 0.31 TCGA-CM-6680-01 9 115760512 115760512 C T ZNF883 RNA 0.15 TCGA-CM-6680-01 9 135102363 135102363 C T NTNG2 Missense_Mutation p.R329W 0.29 deleterious(0) possibly_damaging(0.854) TCGA-CM-6680-01 9 140943767 140943767 C T CACNA1B Missense_Mutation p.S1237L 0.35 deleterious(0.02) benign(0.183) TCGA-CM-6680-01 X 100882530 100882530 G A ARMCX3 3'UTR 0.36 TCGA-CM-6680-01 X 103349602 103349602 G T SLC25A53 Silent p.T113T 0.31 TCGA-CM-6680-01 X 130192416 130192416 G A ARHGAP36 Intron 0.31 TCGA-CM-6680-01 X 132438773 132438773 C T GPC4 Nonsense_Mutation p.W424* 0.41 TCGA-CM-6680-01 X 152988990 152988990 C T BCAP31 Missense_Mutation p.V44M 0.37 tolerated_low_confidence(0.34) benign(0.017) TCGA-CM-6680-01 X 23410996 23410996 C T PTCHD1 Missense_Mutation p.P454L 0.38 deleterious(0.01) possibly_damaging(0.672) TCGA-CM-6680-01 X 40996081 40996081 C T USP9X Missense_Mutation p.R154C 0.30 deleterious(0) probably_damaging(0.974) TCGA-CM-6680-01 X 48209486 48209486 G A SSX3 Silent p.N134N 0.41 TCGA-CM-6680-01 X 51644742 51644742 G A MAGED1 Missense_Mutation p.E741K 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.66) TCGA-CM-6680-01 X 70321041 70321041 C T FOXO4 Missense_Mutation p.R321W 0.33 deleterious(0.01) benign(0.394) TCGA-CM-6680-01 X 8503821 8503821 A G KAL1 Silent p.P551P 0.32 TCGA-D5-5537-01 10 112645102 112645102 A G PDCD4 Missense_Mutation p.H178R 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-D5-5537-01 10 120790586 120790586 G C NANOS1 3'UTR 0.21 TCGA-D5-5537-01 10 135170494 135170494 C A FUOM Nonsense_Mutation p.E60* 0.52 TCGA-D5-5537-01 10 13522938 13522938 G T BEND7 Silent p.R290R 0.25 TCGA-D5-5537-01 10 24831850 24831850 G A KIAA1217 Silent p.K1217K 0.51 TCGA-D5-5537-01 10 37482147 37482147 A G ANKRD30A Missense_Mutation p.K803E 0.16 tolerated(0.91) benign(0.001) TCGA-D5-5537-01 10 46962045 46962045 G C SYT15 Missense_Mutation p.H397Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-D5-5537-01 10 82098195 82098195 T - DYDC1 Intron 0.33 TCGA-D5-5537-01 10 97697761 97697761 G A C10orf131 Missense_Mutation p.R109H 0.55 tolerated(0.16) benign(0) TCGA-D5-5537-01 11 108093360 108093360 G T NPAT 5'UTR 0.46 TCGA-D5-5537-01 11 115047108 115047108 C G CADM1 3'UTR 0.69 TCGA-D5-5537-01 11 120776104 120776104 C T GRIK4 Nonsense_Mutation p.R460* 0.83 TCGA-D5-5537-01 11 5345542 5345543 - A OR51B2 5'UTR 0.37 TCGA-D5-5537-01 11 67174355 67174355 C T TBC1D10C Missense_Mutation p.H236Y 0.82 tolerated(0.56) benign(0.001) TCGA-D5-5537-01 12 104851167 104851167 G C CHST11 5'UTR 0.44 TCGA-D5-5537-01 12 110787972 110787972 T G ATP2A2 3'Flank 0.11 TCGA-D5-5537-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.72 deleterious(0.03) possibly_damaging(0.876) TCGA-D5-5537-01 12 41419023 41419023 G A CNTN1 Silent p.S865S 0.84 TCGA-D5-5537-01 12 63954405 63954405 C A DPY19L2 Missense_Mutation p.D722Y 0.20 deleterious(0) probably_damaging(0.976) TCGA-D5-5537-01 12 6954898 6954898 G A GNB3 Missense_Mutation p.R283H 0.52 deleterious(0) probably_damaging(0.999) TCGA-D5-5537-01 12 9254181 9254181 G T A2M Missense_Mutation p.F452L 0.72 deleterious(0) benign(0.212) TCGA-D5-5537-01 13 101756681 101756681 C T NALCN Missense_Mutation p.D952N 0.21 tolerated(0.06) probably_damaging(0.951) TCGA-D5-5537-01 13 103515168 103515168 G T BIVM-ERCC5 Missense_Mutation p.D983Y 0.43 deleterious_low_confidence(0.01) benign(0.37) TCGA-D5-5537-01 13 110802738 110802738 C T COL4A1 Missense_Mutation p.R1661H 0.54 unknown(0) TCGA-D5-5537-01 13 37453862 37453862 C T SMAD9 5'UTR 0.48 TCGA-D5-5537-01 13 61986319 61986319 C A PCDH20 Missense_Mutation p.R638L 0.21 tolerated(0.55) possibly_damaging(0.509) TCGA-D5-5537-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.76 deleterious(0) probably_damaging(0.999) TCGA-D5-5537-01 14 105418534 105418534 T C AHNAK2 Missense_Mutation p.E1085G 0.78 benign(0.012) TCGA-D5-5537-01 14 105517528 105517528 G A GPR132 Missense_Mutation p.R316C 0.66 deleterious(0) probably_damaging(0.953) TCGA-D5-5537-01 14 64520166 64520166 A C SYNE2 Missense_Mutation p.N3179H 0.74 benign(0.011) TCGA-D5-5537-01 14 69256738 69256738 G - ZFP36L1 Frame_Shift_Del p.H177Tfs*56 0.81 TCGA-D5-5537-01 15 41361849 41361849 C T INO80 Nonsense_Mutation p.W567* 0.45 TCGA-D5-5537-01 15 52416738 52416738 C T GNB5 Missense_Mutation p.V370I 0.27 tolerated(0.1) benign(0.114) TCGA-D5-5537-01 15 75982632 75982632 G T CSPG4 Silent p.G258G 0.53 TCGA-D5-5537-01 15 79304834 79304834 C T RASGRF1 Missense_Mutation p.S621N 0.48 tolerated(0.35) benign(0.003) TCGA-D5-5537-01 16 1130065 1130065 G A SSTR5 3'UTR 0.45 TCGA-D5-5537-01 16 1267970 1267970 G A CACNA1H Missense_Mutation p.S1792N 0.49 tolerated(0.11) benign(0.428) TCGA-D5-5537-01 16 1575265 1575265 G A IFT140 Missense_Mutation p.S944F 0.44 deleterious(0.04) benign(0.014) TCGA-D5-5537-01 16 4164025 4164025 G A ADCY9 Silent p.I473I 0.27 TCGA-D5-5537-01 16 70605707 70605707 C T SF3B3 Silent p.Y1215Y 0.09 TCGA-D5-5537-01 16 70977815 70977815 C T HYDIN Missense_Mutation p.R2190H 0.24 possibly_damaging(0.872) TCGA-D5-5537-01 16 88502608 88502608 G A ZNF469 Silent p.T2882T 0.40 TCGA-D5-5537-01 17 19035997 19035998 CT - GRAPL Frame_Shift_Del p.L41Pfs*48 0.43 TCGA-D5-5537-01 17 31072244 31072244 C T MYO1D Missense_Mutation p.R533H 0.30 deleterious(0) probably_damaging(0.998) TCGA-D5-5537-01 17 34893859 34893859 C T PIGW Silent p.R303R 0.36 TCGA-D5-5537-01 17 40451777 40451777 G T STAT5A Missense_Mutation p.A187S 0.31 tolerated(0.86) benign(0) TCGA-D5-5537-01 17 56349106 56349106 A G MPO Missense_Mutation p.V647A 0.08 deleterious(0.01) probably_damaging(0.933) TCGA-D5-5537-01 17 70120314 70120315 - G SOX9 Frame_Shift_Ins p.Y440Vfs*138 0.28 TCGA-D5-5537-01 17 7612898 7612898 C A EFNB3 3'UTR 0.36 TCGA-D5-5537-01 17 76430232 76430232 C T DNAH17 Missense_Mutation p.A4029T 0.39 possibly_damaging(0.538) TCGA-D5-5537-01 17 8644967 8644967 C T CCDC42 Missense_Mutation p.R106H 0.31 tolerated(0.06) possibly_damaging(0.89) TCGA-D5-5537-01 18 12274238 12274238 C T CIDEA Silent p.Y159Y 0.92 TCGA-D5-5537-01 19 10221008 10221008 G A PPAN Silent p.P277P 0.18 TCGA-D5-5537-01 19 11114031 11114031 G A SMARCA4 Silent p.P653P 0.30 TCGA-D5-5537-01 19 44055732 44055732 G A XRCC1 Missense_Mutation p.P397L 0.24 deleterious(0) probably_damaging(0.941) TCGA-D5-5537-01 19 45567331 45567331 G A CLASRP Missense_Mutation p.E323K 0.50 tolerated(0.11) benign(0.03) TCGA-D5-5537-01 19 46307768 46307768 C T RSPH6A Silent p.T465T 0.36 TCGA-D5-5537-01 19 47422638 47422638 G A ARHGAP35 Missense_Mutation p.V236M 0.28 deleterious(0) probably_damaging(0.916) TCGA-D5-5537-01 19 50962479 50962479 G T MYBPC2 Missense_Mutation p.A903S 0.29 tolerated(0.15) benign(0.116) TCGA-D5-5537-01 19 54313110 54313110 G A NLRP12 Silent p.S601S 0.43 TCGA-D5-5537-01 19 55354359 55354359 C T KIR2DS4 Nonsense_Mutation p.Q227* 0.17 TCGA-D5-5537-01 1 109369896 109369896 C T AKNAD1 Missense_Mutation p.G623R 0.19 tolerated(1) benign(0) TCGA-D5-5537-01 1 11190804 11190804 C T MTOR Missense_Mutation p.E1799K 0.54 tolerated(0.08) probably_damaging(0.996) TCGA-D5-5537-01 1 145115873 145115873 G A SEC22B RNA 0.05 TCGA-D5-5537-01 1 146751866 146751866 T G CHD1L Splice_Site p.X569_splice 0.56 TCGA-D5-5537-01 1 147380626 147380626 C T GJA8 Missense_Mutation p.R182C 0.56 deleterious(0) possibly_damaging(0.892) TCGA-D5-5537-01 1 151679200 151679200 G A CELF3 Silent p.P311P 0.73 TCGA-D5-5537-01 1 154523415 154523416 - T UBE2Q1 Frame_Shift_Ins p.N412Kfs*31 0.29 TCGA-D5-5537-01 1 158517190 158517190 C A OR6Y1 Missense_Mutation p.A236S 0.47 tolerated(0.2) benign(0.07) TCGA-D5-5537-01 1 159505129 159505129 G C OR10J5 Silent p.S223S 0.18 TCGA-D5-5537-01 1 215368303 215368303 C T KCNK2 Silent p.S277S 0.18 TCGA-D5-5537-01 1 217955574 217955574 C T SPATA17 Missense_Mutation p.T261M 0.59 deleterious(0) probably_damaging(0.987) TCGA-D5-5537-01 1 223438140 223438140 A G SUSD4 Missense_Mutation p.S186P 0.11 tolerated(0.16) probably_damaging(0.987) TCGA-D5-5537-01 1 245849317 245849317 C T KIF26B Missense_Mutation p.A1011V 0.61 tolerated(0.26) unknown(0) TCGA-D5-5537-01 1 248059381 248059381 C T OR2W3 Missense_Mutation p.R165C 0.27 tolerated(0.1) benign(0.015) TCGA-D5-5537-01 1 35881109 35881109 G T ZMYM4 Missense_Mutation p.C1368F 0.55 deleterious(0) probably_damaging(0.971) TCGA-D5-5537-01 1 7863805 7863805 A G PER3 Missense_Mutation p.T344A 0.08 tolerated(0.11) possibly_damaging(0.874) TCGA-D5-5537-01 1 79357299 79357299 G A ELTD1 Silent p.H640H 0.21 TCGA-D5-5537-01 20 43933243 43933243 C T MATN4 Missense_Mutation p.A90T 0.53 benign(0.016) TCGA-D5-5537-01 20 44507207 44507207 C T ZSWIM3 Silent p.D670D 0.65 TCGA-D5-5537-01 20 44582529 44582529 G A ZNF335 Missense_Mutation p.P834L 0.34 tolerated(0.14) benign(0.138) TCGA-D5-5537-01 20 61048629 61048629 C T GATA5 Missense_Mutation p.D177N 0.35 deleterious(0) possibly_damaging(0.851) TCGA-D5-5537-01 21 34132231 34132231 G A PAXBP1 Silent p.S350S 0.10 TCGA-D5-5537-01 21 43824027 43824027 G C UBASH3A 5'UTR 0.32 TCGA-D5-5537-01 22 18846125 18846125 C T BCRP7 RNA 0.11 TCGA-D5-5537-01 22 22730761 22730761 C T IGLV5-45 Missense_Mutation p.R86C 0.42 tolerated(0.07) benign(0.079) TCGA-D5-5537-01 22 23243439 23243439 C T IGLC2 Silent p.T95T 0.15 TCGA-D5-5537-01 2 113481300 113481300 G A NT5DC4 Missense_Mutation p.R200H 0.34 deleterious(0.04) benign(0.038) TCGA-D5-5537-01 2 145147370 145147370 T G ZEB2 Missense_Mutation p.K1098T 0.40 tolerated(0.2) possibly_damaging(0.747) TCGA-D5-5537-01 2 160128221 160128222 - A WDSUB1 Frame_Shift_Ins p.V255Sfs*7 0.31 TCGA-D5-5537-01 2 16742755 16742755 G T FAM49A Missense_Mutation p.T161K 0.09 deleterious(0.02) probably_damaging(0.994) TCGA-D5-5537-01 2 179472552 179472552 C T TTN Silent p.P17654P 0.44 TCGA-D5-5537-01 2 182792919 182792919 G A SSFA2 Missense_Mutation p.R1236Q 0.40 tolerated(0.17) possibly_damaging(0.733) TCGA-D5-5537-01 2 18765813 18765813 G A NT5C1B Silent p.Y290Y 0.25 TCGA-D5-5537-01 2 215798886 215798886 G A ABCA12 Silent p.V2532V 0.12 TCGA-D5-5537-01 2 220432657 220432657 G A OBSL1 Silent p.D439D 0.39 TCGA-D5-5537-01 2 241969904 241969904 C T SNED1 Silent p.P139P 0.35 TCGA-D5-5537-01 2 32768406 32768406 T C BIRC6 Silent p.Y4130Y 0.39 TCGA-D5-5537-01 2 70443374 70443374 G A TIA1 Nonsense_Mutation p.R244* 0.44 TCGA-D5-5537-01 2 73496016 73496016 A C FBXO41 Missense_Mutation p.L248R 0.38 deleterious(0) probably_damaging(0.999) TCGA-D5-5537-01 3 169485175 169485175 T C ACTRT3 3'UTR 0.29 TCGA-D5-5537-01 3 46871914 46871914 C T PRSS42 Missense_Mutation p.G288S 0.29 deleterious(0) probably_damaging(0.999) TCGA-D5-5537-01 3 50380574 50380574 G A ZMYND10 Missense_Mutation p.R192C 0.16 deleterious(0.04) possibly_damaging(0.852) TCGA-D5-5537-01 3 52413923 52413923 C A DNAH1 Missense_Mutation p.D2460E 0.28 benign(0.023) TCGA-D5-5537-01 3 9426381 9426381 A G THUMPD3 3'UTR 0.31 TCGA-D5-5537-01 4 111398005 111398005 G A ENPEP Silent p.P145P 0.34 TCGA-D5-5537-01 4 113578519 113578519 A G LARP7 3'UTR 0.33 TCGA-D5-5537-01 4 114278343 114278343 G T ANK2 Nonsense_Mutation p.E2857* 0.31 TCGA-D5-5537-01 4 146824048 146824048 G T ZNF827 Missense_Mutation p.S121R 0.41 deleterious(0) probably_damaging(0.996) TCGA-D5-5537-01 4 158256877 158256877 C T GRIA2 Missense_Mutation p.R441C 0.32 deleterious(0) probably_damaging(0.961) TCGA-D5-5537-01 4 186997977 186997977 C T TLR3 Silent p.A68A 0.27 TCGA-D5-5537-01 4 41984148 41984148 C T DCAF4L1 Silent p.H113H 0.49 TCGA-D5-5537-01 4 4458955 4458955 C T STX18 Missense_Mutation p.A154T 0.41 deleterious(0) possibly_damaging(0.694) TCGA-D5-5537-01 4 55972943 55972943 C T KDR Missense_Mutation p.E483K 0.05 tolerated(1) benign(0) TCGA-D5-5537-01 4 80327735 80327735 C A GK2 Missense_Mutation p.M540I 0.36 tolerated(0.18) benign(0.001) TCGA-D5-5537-01 5 112174027 112174036 ACATTGTGTG - APC Frame_Shift_Del p.H913Qfs*39 0.17 TCGA-D5-5537-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.49 TCGA-D5-5537-01 5 126770498 126770498 G A MEGF10 Missense_Mutation p.A654T 0.21 tolerated(0.12) possibly_damaging(0.833) TCGA-D5-5537-01 5 150667008 150667008 G A SLC36A3 Silent p.H210H 0.63 TCGA-D5-5537-01 5 60835563 60835563 G A ZSWIM6 Missense_Mutation p.V894M 0.41 deleterious(0.01) probably_damaging(0.952) TCGA-D5-5537-01 5 64942915 64942915 C A TRAPPC13 Missense_Mutation p.L112I 0.24 deleterious(0) probably_damaging(0.919) TCGA-D5-5537-01 6 149919428 149919428 C T KATNA1 Missense_Mutation p.R316H 0.64 deleterious(0.01) probably_damaging(0.993) TCGA-D5-5537-01 6 56505008 56505008 T C DST Missense_Mutation p.N271S 0.69 benign(0.069) TCGA-D5-5537-01 6 70098685 70098685 G A BAI3 Missense_Mutation p.E1491K 0.34 tolerated(0.87) benign(0.054) TCGA-D5-5537-01 7 128845240 128845240 C T SMO Missense_Mutation p.T245M 0.29 deleterious(0) probably_damaging(0.982) TCGA-D5-5537-01 7 130025027 130025027 C T CPA1 Silent p.H276H 0.27 TCGA-D5-5537-01 7 141464283 141464283 C G TAS2R3 Missense_Mutation p.L109V 0.56 deleterious(0) probably_damaging(1) TCGA-D5-5537-01 7 42005806 42005806 C T GLI3 Silent p.T955T 0.39 TCGA-D5-5537-01 7 44153419 44153419 C T AEBP1 Silent p.T1012T 0.51 TCGA-D5-5537-01 7 47859106 47859106 A G C7orf69 Missense_Mutation p.T94A 0.08 tolerated_low_confidence(0.19) benign(0.388) TCGA-D5-5537-01 7 97800900 97800900 G A LMTK2 Silent p.G235G 0.16 TCGA-D5-5537-01 7 98985760 98985760 C T ARPC1B Silent p.L90L 0.55 TCGA-D5-5537-01 8 101011489 101011489 C A RGS22 Splice_Site p.X983_splice 0.11 TCGA-D5-5537-01 8 133623564 133623564 G A LRRC6 Silent p.Y340Y 0.56 TCGA-D5-5537-01 8 24324387 24324387 G A ADAM7 Silent p.V155V 0.54 TCGA-D5-5537-01 8 27292073 27292073 A T PTK2B Missense_Mutation p.I397L 0.34 tolerated(0.38) benign(0.011) TCGA-D5-5537-01 8 52321732 52321732 C A PXDNL Missense_Mutation p.V818L 0.25 deleterious(0.04) possibly_damaging(0.872) TCGA-D5-5537-01 8 8747608 8747608 G A MFHAS1 Silent p.C987C 0.45 TCGA-D5-5537-01 9 125391069 125391069 G A OR1B1 Missense_Mutation p.S249F 0.28 deleterious(0) probably_damaging(0.993) TCGA-D5-5537-01 9 136918562 136918562 G A BRD3 Missense_Mutation p.P13L 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-D5-5537-01 9 139747570 139747570 G A MAMDC4 Nonsense_Mutation p.W21* 0.43 TCGA-D5-5537-01 9 32634800 32634800 G A TAF1L Missense_Mutation p.R260C 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-D5-5537-01 X 109764329 109764329 G A TDGF1P3 RNA 0.82 TCGA-D5-5537-01 X 130678282 130678282 C G OR13H1 Missense_Mutation p.P79A 0.85 deleterious(0.01) probably_damaging(0.922) TCGA-D5-5537-01 X 322248 322248 G A PPP2R3B Silent p.R134R 0.15 TCGA-D5-5537-01 X 63411576 63411576 G A AMER1 Nonsense_Mutation p.R531* 0.85 TCGA-D5-5537-01 X 86773090 86773090 G T KLHL4 Missense_Mutation p.S65I 0.83 tolerated_low_confidence(0.13) benign(0.068) TCGA-D5-5538-01 10 102265865 102265865 C T SEC31B Missense_Mutation p.G326S 0.30 deleterious(0.01) benign(0.277) TCGA-D5-5538-01 10 105484119 105484119 C T SH3PXD2A Missense_Mutation p.A103T 0.43 deleterious(0) possibly_damaging(0.712) TCGA-D5-5538-01 10 120514330 120514330 C T CACUL1 5'UTR 0.27 TCGA-D5-5538-01 10 122662745 122662745 G T WDR11 Splice_Site p.X977_splice 0.29 TCGA-D5-5538-01 10 38499641 38499641 T C RP11-508N22.8 RNA 0.22 TCGA-D5-5538-01 10 55973787 55973787 C T PCDH15 Missense_Mutation p.R336Q 0.32 tolerated(0.3) benign(0.007) TCGA-D5-5538-01 10 79565488 79565488 G T DLG5 Missense_Mutation p.S1700Y 0.37 deleterious(0) probably_damaging(0.984) TCGA-D5-5538-01 11 105845153 105845153 A T GRIA4 Silent p.A842A 0.27 TCGA-D5-5538-01 11 126276396 126276396 G T ST3GAL4 Silent p.L15L 0.31 TCGA-D5-5538-01 11 46637731 46637731 G C HARBI1 Missense_Mutation p.H19Q 0.25 tolerated_low_confidence(0.14) benign(0.044) TCGA-D5-5538-01 11 60658668 60658668 C T PRPF19 Missense_Mutation p.M495I 0.09 deleterious(0) possibly_damaging(0.643) TCGA-D5-5538-01 11 6232186 6232186 G T C11orf42 Missense_Mutation p.G306C 0.17 tolerated_low_confidence(0.19) probably_damaging(0.929) TCGA-D5-5538-01 11 63137443 63137443 C T SLC22A9 5'UTR 0.37 TCGA-D5-5538-01 11 64822153 64822153 C T NAALADL1 Missense_Mutation p.D221N 0.38 deleterious(0) probably_damaging(0.969) TCGA-D5-5538-01 11 799555 799555 C T PIDD Missense_Mutation p.D829N 0.50 tolerated(0.23) possibly_damaging(0.709) TCGA-D5-5538-01 11 88033789 88033789 A G CTSC Silent p.A222A 0.33 TCGA-D5-5538-01 12 106532327 106532327 C T NUAK1 Silent p.E35E 0.45 TCGA-D5-5538-01 12 110496808 110496808 G A C12orf76 Missense_Mutation p.S59L 0.31 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-D5-5538-01 12 133721057 133721057 T C CTD-2140B24.4 5'UTR 0.34 TCGA-D5-5538-01 12 23893838 23893838 C T SOX5 Missense_Mutation p.R235H 0.33 deleterious(0) probably_damaging(0.996) TCGA-D5-5538-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.29 deleterious(0) possibly_damaging(0.479) TCGA-D5-5538-01 12 31605207 31605207 T C DENND5B Silent p.K432K 0.35 TCGA-D5-5538-01 12 53565654 53565656 CTT - CSAD Intron 0.36 TCGA-D5-5538-01 12 75601223 75601223 C T KCNC2 Missense_Mutation p.D181N 0.29 tolerated(0.11) benign(0.069) TCGA-D5-5538-01 12 91348383 91348383 G A CCER1 Missense_Mutation p.P46L 0.10 deleterious(0) probably_damaging(0.958) TCGA-D5-5538-01 12 99093239 99093239 C - APAF1 Frame_Shift_Del p.F787Sfs*2 0.27 TCGA-D5-5538-01 13 47356891 47356891 C G ESD Missense_Mutation p.D98H 0.44 deleterious(0) probably_damaging(0.993) TCGA-D5-5538-01 14 21830443 21830443 C T SUPT16H Missense_Mutation p.R569Q 0.58 deleterious(0) probably_damaging(0.987) TCGA-D5-5538-01 14 77327038 77327038 C T C14orf166B Silent p.N369N 0.53 TCGA-D5-5538-01 15 27017610 27017610 G A GABRB3 Missense_Mutation p.P60L 0.55 deleterious(0) possibly_damaging(0.879) TCGA-D5-5538-01 15 28000513 28000513 C T OCA2 3'UTR 0.53 TCGA-D5-5538-01 15 40212153 40212153 A G GPR176 Silent p.G25G 0.09 TCGA-D5-5538-01 15 45442860 45442860 T C DUOX1 Missense_Mutation p.L950P 0.16 tolerated(0.06) benign(0.001) TCGA-D5-5538-01 15 45567856 45567856 G A SLC28A2 3'UTR 0.50 TCGA-D5-5538-01 15 91769557 91769557 G A SV2B Missense_Mutation p.G22S 0.31 deleterious_low_confidence(0.04) benign(0.148) TCGA-D5-5538-01 16 20844443 20844443 G C AC004381.6 Missense_Mutation p.E461Q 0.40 tolerated(0.39) benign(0.057) TCGA-D5-5538-01 16 22132345 22132345 G A VWA3A Silent p.K391K 0.30 TCGA-D5-5538-01 16 29679204 29679204 C T SPN 3'UTR 0.24 TCGA-D5-5538-01 16 4164297 4164297 G A ADCY9 Missense_Mutation p.R383C 0.07 deleterious(0) probably_damaging(0.999) TCGA-D5-5538-01 16 789866 789866 C A NARFL Intron 0.44 TCGA-D5-5538-01 17 39020053 39020053 C T KRT12 Missense_Mutation p.G291R 0.31 deleterious(0) probably_damaging(0.996) TCGA-D5-5538-01 17 43912130 43912130 A G CRHR1 Nonstop_Mutation p.*445Wext*59 0.08 TCGA-D5-5538-01 17 5436238 5436238 T A NLRP1 Missense_Mutation p.D1067V 0.37 deleterious(0) possibly_damaging(0.759) TCGA-D5-5538-01 17 66267206 66267206 G A SLC16A6 Silent p.C365C 0.24 TCGA-D5-5538-01 17 67109826 67109826 G A ABCA6 Missense_Mutation p.A612V 0.21 deleterious(0.04) possibly_damaging(0.654) TCGA-D5-5538-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.51 deleterious(0.02) probably_damaging(0.922) TCGA-D5-5538-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.47 deleterious(0.03) probably_damaging(1) TCGA-D5-5538-01 19 22939259 22939259 G T ZNF99 3'Flank 0.30 TCGA-D5-5538-01 19 312207 312207 G A MIER2 Silent p.N291N 0.35 TCGA-D5-5538-01 19 3907802 3907802 G A ATCAY Silent p.T143T 0.17 TCGA-D5-5538-01 19 40368684 40368684 G A FCGBP Missense_Mutation p.R4222C 0.15 possibly_damaging(0.898) TCGA-D5-5538-01 19 48201964 48201964 G T GLTSCR1 Nonsense_Mutation p.E1108* 0.45 TCGA-D5-5538-01 19 48551486 48551486 G A PLA2G4C 3'UTR 0.25 TCGA-D5-5538-01 19 51561871 51561871 C T KLK13 Missense_Mutation p.R190H 0.31 tolerated(0.28) benign(0.01) TCGA-D5-5538-01 19 54850339 54850339 A T LILRA4 Missense_Mutation p.L9H 0.36 deleterious(0) benign(0.002) TCGA-D5-5538-01 19 57802250 57802250 A T ZNF460 Missense_Mutation p.Q114L 0.35 tolerated(0.42) benign(0.005) TCGA-D5-5538-01 19 58011345 58011345 C T ZNF773 5'UTR 0.28 TCGA-D5-5538-01 19 9271693 9271693 A G ZNF317 Missense_Mutation p.S458G 0.33 tolerated(0.13) probably_damaging(0.993) TCGA-D5-5538-01 1 155630509 155630509 G A YY1AP1 Missense_Mutation p.R536C 0.34 tolerated_low_confidence(0.16) benign(0.046) TCGA-D5-5538-01 1 158581015 158581015 C T SPTA1 3'UTR 0.33 TCGA-D5-5538-01 1 216062203 216062203 A T USH2A Nonsense_Mutation p.Y2596* 0.28 TCGA-D5-5538-01 1 228538597 228538597 C T OBSCN Silent p.D7081D 0.09 TCGA-D5-5538-01 1 3679827 3679827 C T CCDC27 Silent p.S370S 0.42 TCGA-D5-5538-01 1 909370 909370 C T PLEKHN1 Missense_Mutation p.A531V 0.25 deleterious(0.01) benign(0.046) TCGA-D5-5538-01 1 982771 982771 G A AGRN Silent p.T1151T 0.40 TCGA-D5-5538-01 1 985394 985394 G A AGRN Missense_Mutation p.R1619H 0.39 deleterious(0.01) possibly_damaging(0.891) TCGA-D5-5538-01 21 15893508 15893508 C A SAMSN1 Missense_Mutation p.R99L 0.34 deleterious(0.05) probably_damaging(0.917) TCGA-D5-5538-01 21 28306826 28306826 G A ADAMTS5 Nonsense_Mutation p.Q550* 0.30 TCGA-D5-5538-01 21 30419553 30419553 C T USP16 Missense_Mutation p.T641I 0.28 deleterious(0) probably_damaging(1) TCGA-D5-5538-01 21 44592443 44592443 G A CRYAA 3'UTR 0.36 TCGA-D5-5538-01 22 18028206 18028206 G A CECR2 Missense_Mutation p.E1056K 0.62 deleterious_low_confidence(0.01) possibly_damaging(0.711) TCGA-D5-5538-01 22 18232895 18232895 G A BID Silent p.R42R 0.72 TCGA-D5-5538-01 22 22322027 22322027 C T TOP3B Missense_Mutation p.R267Q 0.61 tolerated(0.28) benign(0.064) TCGA-D5-5538-01 22 38823005 38823005 G T KCNJ4 Missense_Mutation p.A378D 0.75 deleterious(0.04) probably_damaging(0.999) TCGA-D5-5538-01 22 42377705 42377705 C A SEPT3 Missense_Mutation p.P23T 0.72 tolerated_low_confidence(0.06) benign(0.227) TCGA-D5-5538-01 2 100210308 100210308 G A AFF3 Silent p.P630P 0.47 TCGA-D5-5538-01 2 137988794 137988794 T C THSD7B Missense_Mutation p.L635P 0.26 tolerated(0.15) possibly_damaging(0.683) TCGA-D5-5538-01 2 166859050 166859050 C A SCN1A Missense_Mutation p.A1406S 0.33 tolerated(0.23) benign(0.177) TCGA-D5-5538-01 2 174230229 174230229 C T CDCA7 Missense_Mutation p.P315L 0.48 deleterious(0.01) possibly_damaging(0.875) TCGA-D5-5538-01 2 179526509 179526509 T A TTN Missense_Mutation p.K12421M 0.33 TCGA-D5-5538-01 2 202002310 202002310 T C CFLAR Intron 0.18 TCGA-D5-5538-01 2 204055107 204055107 T C NBEAL1 Silent p.L2277L 0.37 TCGA-D5-5538-01 2 210681762 210681762 C T UNC80 Missense_Mutation p.R489C 0.36 probably_damaging(0.963) TCGA-D5-5538-01 2 219736388 219736388 G A WNT6 Silent p.P161P 0.50 TCGA-D5-5538-01 2 219754928 219754928 C T WNT10A Missense_Mutation p.T200I 0.29 tolerated(0.18) benign(0.326) TCGA-D5-5538-01 2 63176211 63176211 C T EHBP1 Missense_Mutation p.H779Y 0.29 deleterious_low_confidence(0.01) benign(0.001) TCGA-D5-5538-01 3 119084172 119084172 T C ARHGAP31 Missense_Mutation p.V37A 0.25 deleterious(0) probably_damaging(1) TCGA-D5-5538-01 3 120050087 120050087 C G LRRC58 Missense_Mutation p.S359T 0.33 tolerated(0.44) benign(0.031) TCGA-D5-5538-01 3 123166796 123166796 G A ADCY5 Silent p.P199P 0.50 TCGA-D5-5538-01 3 12610428 12610428 C T MKRN2 Silent p.D27D 0.31 TCGA-D5-5538-01 3 143212591 143212591 C A SLC9A9 Missense_Mutation p.A407S 0.33 tolerated(0.26) probably_damaging(0.995) TCGA-D5-5538-01 3 170825918 170825918 G A TNIK Missense_Mutation p.P773L 0.29 tolerated(0.31) benign(0.313) TCGA-D5-5538-01 3 179131386 179131386 G A GNB4 Silent p.I171I 0.33 TCGA-D5-5538-01 3 186572419 186572419 C T ADIPOQ Missense_Mutation p.R221C 0.25 tolerated(0.12) benign(0.113) TCGA-D5-5538-01 3 186953987 186953987 G T MASP1 Missense_Mutation p.Q558K 0.24 tolerated(1) benign(0.001) TCGA-D5-5538-01 3 193019039 193019039 G A ATP13A5 Silent p.Y912Y 0.29 TCGA-D5-5538-01 3 193042662 193042662 G T ATP13A5 Silent p.G555G 0.32 TCGA-D5-5538-01 3 22424055 22424055 G T HMGB1P5 RNA 0.22 TCGA-D5-5538-01 3 38768323 38768323 G A SCN10A Missense_Mutation p.S954F 0.32 deleterious(0.03) possibly_damaging(0.811) TCGA-D5-5538-01 3 50396126 50396126 A G TMEM115 Silent p.A123A 0.10 TCGA-D5-5538-01 3 55504015 55504015 T G WNT5A 3'UTR 0.38 TCGA-D5-5538-01 3 58092404 58092404 T C FLNB Intron 0.41 TCGA-D5-5538-01 3 97806911 97806911 G T OR5AC2 Missense_Mutation p.V299F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D5-5538-01 4 126239153 126239153 C T FAT4 Silent p.S529S 0.24 TCGA-D5-5538-01 4 2275880 2275880 C T ZFYVE28 Silent p.T705T 0.32 TCGA-D5-5538-01 5 112174937 112174937 G T APC Nonsense_Mutation p.E1216* 0.41 TCGA-D5-5538-01 5 112175696 112175696 C T APC Nonsense_Mutation p.Q1469* 0.23 TCGA-D5-5538-01 5 13786382 13786382 C T DNAH5 Missense_Mutation p.R2909H 0.38 possibly_damaging(0.522) TCGA-D5-5538-01 5 139947128 139947128 G A SLC35A4 Missense_Mutation p.S125N 0.39 deleterious(0.01) probably_damaging(0.988) TCGA-D5-5538-01 5 140580569 140580569 C A PCDHB11 Missense_Mutation p.P408T 0.18 tolerated_low_confidence(0.15) benign(0.008) TCGA-D5-5538-01 5 140720748 140720748 G C PCDHGA2 Missense_Mutation p.S737T 0.30 tolerated_low_confidence(0.25) benign(0.002) TCGA-D5-5538-01 5 180326127 180326127 A C BTNL8 5'UTR 0.30 TCGA-D5-5538-01 5 31323515 31323515 C T CDH6 3'UTR 0.36 TCGA-D5-5538-01 5 58271580 58271580 C T PDE4D Missense_Mutation p.M639I 0.31 tolerated_low_confidence(0.06) possibly_damaging(0.455) TCGA-D5-5538-01 5 89757100 89757100 G A MBLAC2 Nonsense_Mutation p.R242* 0.31 TCGA-D5-5538-01 6 108029212 108029212 G A SCML4 Missense_Mutation p.S326L 0.14 tolerated(0.26) benign(0.009) TCGA-D5-5538-01 6 123039060 123039060 G A PKIB Missense_Mutation p.G48R 0.42 deleterious(0.02) benign(0.111) TCGA-D5-5538-01 6 152719826 152719826 C A SYNE1 Missense_Mutation p.K2426N 0.34 possibly_damaging(0.641) TCGA-D5-5538-01 6 167755078 167755078 G T TTLL2 Nonsense_Mutation p.E564* 0.33 TCGA-D5-5538-01 6 3104498 3104498 C T RIPK1 Nonsense_Mutation p.Q319* 0.09 TCGA-D5-5538-01 6 38825349 38825349 G A DNAH8 Missense_Mutation p.R1713H 0.29 benign(0) TCGA-D5-5538-01 6 4130374 4130374 A C C6orf201 Splice_Site p.X128_splice 0.35 TCGA-D5-5538-01 7 106520026 106520026 C T PIK3CG Silent p.A818A 0.30 TCGA-D5-5538-01 7 115874652 115874652 G C TES Missense_Mutation p.G31A 0.31 deleterious(0) probably_damaging(0.999) TCGA-D5-5538-01 7 129414785 129414785 T C MIR183 RNA 0.30 TCGA-D5-5538-01 7 142459747 142459747 T C PRSS1 Missense_Mutation p.I108T 0.29 deleterious(0) probably_damaging(0.991) TCGA-D5-5538-01 7 45143039 45143039 C T TBRG4 Missense_Mutation p.V357I 0.45 tolerated(0.72) benign(0.005) TCGA-D5-5538-01 7 53103933 53103933 C T POM121L12 Missense_Mutation p.A190V 0.26 tolerated(0.31) possibly_damaging(0.866) TCGA-D5-5538-01 7 6370614 6370614 T C FAM220A Missense_Mutation p.S58G 0.19 tolerated(0.15) possibly_damaging(0.451) TCGA-D5-5538-01 7 82451823 82451823 G A PCLO Missense_Mutation p.R4927C 0.30 unknown(0) TCGA-D5-5538-01 8 103359252 103359252 C T UBR5 Missense_Mutation p.R152Q 0.34 tolerated(0.52) possibly_damaging(0.706) TCGA-D5-5538-01 8 143956495 143956495 G - CYP11B1 Frame_Shift_Del p.Q426Sfs*4 0.32 TCGA-D5-5538-01 8 144947136 144947136 A G EPPK1 Missense_Mutation p.S96P 0.10 possibly_damaging(0.898) TCGA-D5-5538-01 8 145135377 145135377 G A EXOSC4 Missense_Mutation p.R204Q 0.15 deleterious(0.01) probably_damaging(0.966) TCGA-D5-5538-01 8 145675896 145675896 G C CYHR1 Missense_Mutation p.H319D 0.20 tolerated(0.12) benign(0.033) TCGA-D5-5538-01 8 2966212 2966212 C T CSMD1 Missense_Mutation p.E2223K 0.50 probably_damaging(0.922) TCGA-D5-5538-01 8 75929555 75929555 C A CRISPLD1 Missense_Mutation p.Q333K 0.28 tolerated(0.27) possibly_damaging(0.559) TCGA-D5-5538-01 8 87899823 87899823 A G CNBD1 Missense_Mutation p.I48V 0.21 tolerated(0.14) benign(0.007) TCGA-D5-5538-01 9 100071830 100071830 G T CCDC180 Missense_Mutation p.Q112H 0.39 tolerated(0.12) benign(0.084) TCGA-D5-5538-01 9 134612876 134612876 C G RAPGEF1 5'UTR 0.34 TCGA-D5-5538-01 9 137642718 137642718 A C COL5A1 Missense_Mutation p.Q551P 0.27 probably_damaging(0.985) TCGA-D5-5538-01 9 139302277 139302277 C T SDCCAG3 Splice_Site p.X134_splice 0.33 TCGA-D5-5538-01 9 140137109 140137109 A G TUBB4B Missense_Mutation p.M147V 0.18 deleterious_low_confidence(0.01) benign(0.309) TCGA-D5-5538-01 9 40772077 40772077 G T ZNF658 3'UTR 0.22 TCGA-D5-5538-01 9 71114163 71114163 G A PGM5 Silent p.S500S 0.35 TCGA-D5-5538-01 9 94973152 94973152 G A IARS Silent p.P1242P 0.35 TCGA-D5-5538-01 X 11682802 11682802 G A ARHGAP6 Silent p.D49D 0.41 TCGA-D5-5538-01 X 123034388 123034388 T C XIAP Missense_Mutation p.M382T 0.23 deleterious(0) benign(0.418) TCGA-D5-5538-01 X 151900608 151900608 G T MAGEA12 Missense_Mutation p.P65T 0.48 deleterious(0.03) probably_damaging(0.925) TCGA-D5-5538-01 X 153043799 153043799 G T SRPK3 5'Flank 0.22 TCGA-D5-5538-01 X 16737798 16737798 C T SYAP1 5'UTR 0.11 TCGA-D5-5538-01 X 17710476 17710476 G A NHS Missense_Mutation p.R247H 0.25 deleterious(0) possibly_damaging(0.855) TCGA-D5-5538-01 X 30268699 30268699 C A MAGEB1 Missense_Mutation p.A30D 0.26 deleterious(0.02) possibly_damaging(0.568) TCGA-D5-5538-01 X 37285131 37285131 C T PRRG1 Missense_Mutation p.R17C 0.25 deleterious(0) possibly_damaging(0.874) TCGA-D5-5538-01 X 38665452 38665452 C - MID1IP1 3'UTR 0.29 TCGA-D5-5538-01 X 46696502 46696502 G T RP2 5'UTR 0.23 TCGA-D5-5538-01 X 47107230 47107230 C T USP11 Silent p.D931D 0.29 TCGA-D5-5538-01 X 51488801 51488801 A C GSPT2 3'UTR 0.28 TCGA-D5-5538-01 X 54959872 54959872 A G PFKFB1 Silent p.P460P 0.30 TCGA-D5-5538-01 X 591764 591764 G A SHOX Silent p.A44A 0.54 TCGA-D5-5538-01 X 65476174 65476174 T C HEPH Splice_Site p.X1020_splice 0.49 TCGA-D5-5538-01 X 69522237 69522237 G A KIF4A Missense_Mutation p.R256H 0.21 deleterious(0) probably_damaging(0.989) TCGA-D5-5538-01 X 70145501 70145501 G A SLC7A3 3'UTR 0.22 TCGA-D5-5538-01 X 71350140 71350140 T G RGAG4 Missense_Mutation p.E417D 0.49 tolerated_low_confidence(0.45) unknown(0) TCGA-D5-5538-01 X 72224574 72224574 C A PABPC1L2B 3'UTR 0.21 TCGA-D5-5538-01 X 72225034 72225034 C T PABPC1L2B 3'UTR 0.44 TCGA-D5-5538-01 X 72298133 72298133 G T PABPC1L2A 3'UTR 0.15 TCGA-D5-5539-01 10 106916918 106916918 T A SORCS3 Missense_Mutation p.F502Y 0.15 tolerated(0.06) benign(0.038) TCGA-D5-5539-01 10 27352961 27352961 G T ANKRD26 Missense_Mutation p.A440D 0.33 deleterious(0.01) possibly_damaging(0.812) TCGA-D5-5539-01 10 38121660 38121660 G C ZNF248 Missense_Mutation p.P208R 0.25 tolerated(0.37) benign(0.235) TCGA-D5-5539-01 10 89720823 89720823 T G PTEN Missense_Mutation p.L325R 0.56 deleterious(0) benign(0.133) TCGA-D5-5539-01 11 102818623 102818623 C T MMP13 Nonsense_Mutation p.W403* 0.19 TCGA-D5-5539-01 11 105781158 105781158 C A GRIA4 Intron 0.14 TCGA-D5-5539-01 11 123886899 123886899 C T OR10G4 Silent p.A206A 0.17 TCGA-D5-5539-01 11 124756658 124756658 G A ROBO4 Silent p.S832S 0.11 TCGA-D5-5539-01 11 132082019 132082019 T G NTM Silent p.T168T 0.16 TCGA-D5-5539-01 11 3038348 3038348 G C CARS Silent p.T635T 0.23 TCGA-D5-5539-01 11 56409550 56409550 G A OR5AP2 Silent p.A122A 0.38 TCGA-D5-5539-01 11 64000194 64000194 C T DNAJC4 Silent p.N128N 0.22 TCGA-D5-5539-01 11 64390349 64390349 G A NRXN2 Missense_Mutation p.A1350V 0.21 tolerated(0.07) benign(0.006) TCGA-D5-5539-01 11 64664226 64664226 G A ATG2A Nonsense_Mutation p.Q1756* 0.08 TCGA-D5-5539-01 11 72945632 72945632 G A P2RY2 Missense_Mutation p.R143H 0.25 tolerated(0.25) benign(0.022) TCGA-D5-5539-01 11 7950066 7950066 G C OR10A6 Missense_Mutation p.I48M 0.41 deleterious(0.01) possibly_damaging(0.531) TCGA-D5-5539-01 11 8117139 8117139 C T TUB Silent p.D219D 0.30 TCGA-D5-5539-01 11 94280413 94280413 C - FUT4 3'UTR 0.24 TCGA-D5-5539-01 11 99827605 99827605 C A CNTN5 Silent p.I247I 0.28 TCGA-D5-5539-01 12 104179177 104179177 G A NT5DC3 Missense_Mutation p.T422M 0.40 deleterious(0) probably_damaging(0.987) TCGA-D5-5539-01 12 130833914 130833914 C T PIWIL1 Nonsense_Mutation p.Q289* 0.24 TCGA-D5-5539-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.38 deleterious(0.04) possibly_damaging(0.506) TCGA-D5-5539-01 12 4543446 4543446 G A FGF6 Missense_Mutation p.R188W 0.37 deleterious(0) probably_damaging(0.998) TCGA-D5-5539-01 12 68551803 68551803 C A IFNG Missense_Mutation p.D86Y 0.20 deleterious(0) benign(0.032) TCGA-D5-5539-01 13 46559723 46559723 G A ZC3H13 Missense_Mutation p.R477W 0.25 unknown(0) TCGA-D5-5539-01 14 60976611 60976611 C T SIX6 Silent p.T165T 0.33 TCGA-D5-5539-01 14 65267480 65267480 G A SPTB Silent p.V290V 0.38 TCGA-D5-5539-01 14 91787608 91787608 C T CCDC88C Silent p.A461A 0.24 TCGA-D5-5539-01 14 96707160 96707160 G T BDKRB2 Missense_Mutation p.M165I 0.08 tolerated(0.4) benign(0.01) TCGA-D5-5539-01 15 23811330 23811330 C T MKRN3 Missense_Mutation p.P134L 0.35 tolerated(0.29) benign(0.008) TCGA-D5-5539-01 15 44914930 44914931 - C SPG11 Frame_Shift_Ins p.F771Cfs*4 0.16 TCGA-D5-5539-01 15 84324539 84324539 G A ADAMTSL3 Nonsense_Mutation p.W9* 0.42 TCGA-D5-5539-01 15 90349232 90349232 G A ANPEP Missense_Mutation p.R195C 0.12 deleterious(0) possibly_damaging(0.764) TCGA-D5-5539-01 15 91548157 91548157 G A VPS33B Missense_Mutation p.S392L 0.53 tolerated(0.07) benign(0.424) TCGA-D5-5539-01 16 10788694 10788694 A T TEKT5 Missense_Mutation p.C13S 0.31 tolerated(0.31) possibly_damaging(0.51) TCGA-D5-5539-01 16 2812958 2812958 C T SRRM2 Missense_Mutation p.T810M 0.41 unknown(0) TCGA-D5-5539-01 16 28970071 28970071 G A NFATC2IP Missense_Mutation p.A294T 0.41 deleterious(0) probably_damaging(0.996) TCGA-D5-5539-01 16 3165856 3165856 C T ZNF205 Missense_Mutation p.L100F 0.33 tolerated(0.11) benign(0.037) TCGA-D5-5539-01 16 4732921 4732921 G A MGRN1 Missense_Mutation p.A486T 0.18 tolerated_low_confidence(0.13) benign(0.008) TCGA-D5-5539-01 16 49672725 49672725 G A ZNF423 Missense_Mutation p.A113V 0.17 deleterious(0.03) possibly_damaging(0.506) TCGA-D5-5539-01 16 71318528 71318528 T C CMTR2 Silent p.K432K 0.16 TCGA-D5-5539-01 16 72122970 72122970 G A TXNL4B Missense_Mutation p.A67V 0.32 deleterious(0.02) benign(0.008) TCGA-D5-5539-01 16 79245794 79245794 C T WWOX 3'UTR 0.55 TCGA-D5-5539-01 17 21320108 21320108 C A KCNJ12 3'UTR 0.16 TCGA-D5-5539-01 17 28434976 28434976 G A EFCAB5 Silent p.P1482P 0.33 TCGA-D5-5539-01 17 3430172 3430172 G A TRPV3 Missense_Mutation p.S518L 0.54 tolerated(0.36) probably_damaging(0.999) TCGA-D5-5539-01 17 41165642 41165642 G T IFI35 Silent p.L177L 0.30 TCGA-D5-5539-01 17 42170128 42170128 C T HDAC5 Missense_Mutation p.G231S 0.36 tolerated(0.26) probably_damaging(0.997) TCGA-D5-5539-01 17 76445583 76445583 G A DNAH17 Silent p.D3694D 0.45 TCGA-D5-5539-01 19 1399020 1399020 G A GAMT Silent p.H155H 0.38 TCGA-D5-5539-01 19 18546877 18546877 C T ISYNA1 Missense_Mutation p.V314M 0.23 deleterious(0.02) possibly_damaging(0.901) TCGA-D5-5539-01 19 31770659 31770659 C A TSHZ3 Splice_Site p.X14_splice 0.35 TCGA-D5-5539-01 19 33168159 33168159 G A RGS9BP 3'UTR 0.10 TCGA-D5-5539-01 19 35790471 35790471 G A MAG Missense_Mutation p.V144M 0.38 tolerated(0.08) probably_damaging(0.973) TCGA-D5-5539-01 19 37383110 37383110 G A ZNF829 Missense_Mutation p.R276C 0.20 tolerated(0.32) possibly_damaging(0.471) TCGA-D5-5539-01 19 38161428 38161428 A C ZNF781 5'UTR 0.18 TCGA-D5-5539-01 19 38899462 38899462 G T FAM98C Missense_Mutation p.R330S 0.41 deleterious(0) benign(0.257) TCGA-D5-5539-01 19 50838211 50838211 G C NAPSB RNA 0.26 TCGA-D5-5539-01 19 52217220 52217220 C T HAS1 Silent p.A399A 0.44 TCGA-D5-5539-01 19 52887265 52887265 A G ZNF880 Silent p.S144S 0.33 TCGA-D5-5539-01 19 54139929 54139929 C T DPRX Missense_Mutation p.P88L 0.10 tolerated(0.3) benign(0.001) TCGA-D5-5539-01 19 54260061 54260061 C G MIR516A1 RNA 0.36 TCGA-D5-5539-01 19 54721073 54721073 G A LILRB3 Silent p.Y596Y 0.33 TCGA-D5-5539-01 19 6147555 6147555 T C ACSBG2 Missense_Mutation p.F56L 0.35 tolerated(1) benign(0.004) TCGA-D5-5539-01 19 7142922 7142922 G A INSR Missense_Mutation p.T816M 0.21 deleterious(0) probably_damaging(1) TCGA-D5-5539-01 19 8197873 8197873 C T FBN3 Missense_Mutation p.C570Y 0.38 deleterious(0.01) benign(0.111) TCGA-D5-5539-01 1 11087646 11087646 G A MASP2 Missense_Mutation p.P453S 0.25 tolerated(0.64) benign(0.023) TCGA-D5-5539-01 1 115229485 115229485 G A AMPD1 Silent p.L121L 0.38 TCGA-D5-5539-01 1 145585510 145585510 G A PIAS3 Missense_Mutation p.R592H 0.59 tolerated_low_confidence(0.19) possibly_damaging(0.764) TCGA-D5-5539-01 1 152785235 152785235 T G LCE1B Missense_Mutation p.C105G 0.10 tolerated_low_confidence(0.13) unknown(0) TCGA-D5-5539-01 1 153903313 153903313 C T DENND4B Missense_Mutation p.V1379I 0.19 tolerated(0.38) benign(0.002) TCGA-D5-5539-01 1 155185431 155185431 C T MTX1 3'Flank 0.21 TCGA-D5-5539-01 1 159683891 159683891 C T CRP Silent p.S33S 0.64 TCGA-D5-5539-01 1 159901305 159901305 C T IGSF9 Nonsense_Mutation p.W484* 0.18 TCGA-D5-5539-01 1 168169370 168169370 T C TIPRL 3'UTR 0.44 TCGA-D5-5539-01 1 173855179 173855179 G A ZBTB37 Missense_Mutation p.E477K 0.49 tolerated(0.32) benign(0.015) TCGA-D5-5539-01 1 182429187 182429187 C A RGSL1 Missense_Mutation p.P74T 0.19 deleterious(0.03) possibly_damaging(0.743) TCGA-D5-5539-01 1 19212031 19212031 T C ALDH4A1 Missense_Mutation p.K130R 0.08 tolerated(0.2) benign(0.047) TCGA-D5-5539-01 1 203194885 203194885 C T CHIT1 Missense_Mutation p.A57T 0.57 deleterious(0.02) possibly_damaging(0.673) TCGA-D5-5539-01 1 215848551 215848551 C T USH2A Silent p.T4234T 0.55 TCGA-D5-5539-01 1 222717195 222717195 C T HHIPL2 Missense_Mutation p.V220I 0.58 tolerated(0.08) probably_damaging(0.991) TCGA-D5-5539-01 1 228466896 228466896 C T OBSCN Missense_Mutation p.R2812W 0.27 probably_damaging(0.997) TCGA-D5-5539-01 1 228475593 228475593 C T OBSCN Missense_Mutation p.P3677L 0.15 probably_damaging(0.981) TCGA-D5-5539-01 1 243375246 243375246 C T CEP170 Silent p.R72R 0.08 TCGA-D5-5539-01 1 248636672 248636672 T C OR2T3 Silent p.T7T 0.13 TCGA-D5-5539-01 1 248845119 248845119 G A OR14I1 Missense_Mutation p.R163W 0.27 tolerated(0.19) benign(0.001) TCGA-D5-5539-01 1 36637138 36637138 A G MAP7D1 Missense_Mutation p.H139R 0.23 possibly_damaging(0.877) TCGA-D5-5539-01 1 86934511 86934511 G A CLCA1 5'UTR 0.26 TCGA-D5-5539-01 20 1276992 1276992 C A SNPH 5'UTR 0.36 TCGA-D5-5539-01 20 15967419 15967419 T C MACROD2 Missense_Mutation p.S345P 0.34 tolerated_low_confidence(0.09) benign(0.031) TCGA-D5-5539-01 20 3209218 3209218 C T SLC4A11 Silent p.A819A 0.28 TCGA-D5-5539-01 20 40827928 40827928 G A PTPRT Missense_Mutation p.R815C 0.38 deleterious(0.03) benign(0.425) TCGA-D5-5539-01 20 41400082 41400082 C A PTPRT Missense_Mutation p.W226L 0.28 tolerated(0.47) possibly_damaging(0.866) TCGA-D5-5539-01 20 43850896 43850896 G A SEMG2 Missense_Mutation p.R208H 0.14 deleterious(0.03) probably_damaging(0.93) TCGA-D5-5539-01 20 61143764 61143764 G A C20orf166 5'Flank 0.23 TCGA-D5-5539-01 21 46021015 46021015 G T KRTAP10-7 Missense_Mutation p.C165F 0.23 deleterious(0) unknown(0) TCGA-D5-5539-01 22 26423516 26423516 A G MYO18B Missense_Mutation p.S2526G 0.15 tolerated(0.06) benign(0.031) TCGA-D5-5539-01 22 38016296 38016296 C T GGA1 Missense_Mutation p.L119F 0.24 deleterious(0) probably_damaging(0.977) TCGA-D5-5539-01 22 40066161 40066161 G A CACNA1I Missense_Mutation p.R1438Q 0.22 deleterious(0.01) benign(0.238) TCGA-D5-5539-01 2 103343362 103343362 A G MFSD9 Silent p.Y123Y 0.41 TCGA-D5-5539-01 2 167085350 167085350 T C SCN9A Missense_Mutation p.T1342A 0.17 tolerated(0.32) benign(0.129) TCGA-D5-5539-01 2 179599526 179599526 G A TTN Missense_Mutation p.T5042M 0.36 TCGA-D5-5539-01 2 179642731 179642731 G A TTN Intron 0.31 TCGA-D5-5539-01 2 218999541 218999541 T C CXCR2 Missense_Mutation p.M6T 0.21 tolerated(0.39) benign(0.004) TCGA-D5-5539-01 2 226273792 226273792 C T NYAP2 Nonsense_Mutation p.R66* 0.24 TCGA-D5-5539-01 2 226447601 226447601 G A NYAP2 Missense_Mutation p.A490T 0.43 tolerated(0.26) benign(0.355) TCGA-D5-5539-01 2 237490300 237490300 T G ACKR3 3'UTR 0.42 TCGA-D5-5539-01 2 238296564 238296564 C T COL6A3 Missense_Mutation p.A325T 0.21 probably_damaging(0.99) TCGA-D5-5539-01 2 239242652 239242652 C T TRAF3IP1 Missense_Mutation p.R347W 0.38 tolerated(0.06) benign(0.052) TCGA-D5-5539-01 2 74480208 74480208 G A SLC4A5 Silent p.I387I 0.11 TCGA-D5-5539-01 2 96553731 96553731 C G ANKRD36C Missense_Mutation p.K28N 0.40 deleterious_low_confidence(0.05) benign(0.127) TCGA-D5-5539-01 3 123419660 123419660 C G MYLK Missense_Mutation p.E885D 0.20 tolerated(0.28) benign(0.217) TCGA-D5-5539-01 3 195478122 195478122 G T MUC4 Silent p.T5201T 0.42 TCGA-D5-5539-01 3 40351343 40351343 C T EIF1B 5'UTR 0.21 TCGA-D5-5539-01 3 98073614 98073614 A C OR5K4 Missense_Mutation p.N306T 0.20 tolerated_low_confidence(0.08) benign(0.002) TCGA-D5-5539-01 3 98518265 98518265 G C DCBLD2 Nonsense_Mutation p.S760* 0.20 TCGA-D5-5539-01 4 126238415 126238415 G A FAT4 Silent p.A283A 0.56 TCGA-D5-5539-01 4 2172442 2172442 C T POLN Silent p.T506T 0.40 TCGA-D5-5539-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.47 TCGA-D5-5539-01 5 156186371 156186371 T C SGCD Silent p.T281T 0.15 TCGA-D5-5539-01 5 180630575 180630575 G A TRIM7 Silent p.S196S 0.29 TCGA-D5-5539-01 5 33641989 33641989 C A ADAMTS12 Missense_Mutation p.W548C 0.18 deleterious(0) probably_damaging(0.994) TCGA-D5-5539-01 5 82868240 82868240 C T VCAN Silent p.Y3247Y 0.31 TCGA-D5-5539-01 5 86669978 86669978 A T RASA1 Splice_Site p.X593_splice 0.40 TCGA-D5-5539-01 6 138751787 138751787 G A NHSL1 Missense_Mutation p.T1236M 0.44 deleterious(0) benign(0.02) TCGA-D5-5539-01 6 160494360 160494360 C T IGF2R Silent p.S1602S 0.37 TCGA-D5-5539-01 6 27100831 27100831 C G HIST1H2BJ 5'Flank 0.38 TCGA-D5-5539-01 6 32049354 32049354 C T RNA5SP206 5'Flank 0.27 TCGA-D5-5539-01 6 39282987 39282987 G A KCNK16 Silent p.P294P 0.13 TCGA-D5-5539-01 6 43126606 43126606 C T PTK7 Missense_Mutation p.R933C 0.14 deleterious(0) probably_damaging(0.999) TCGA-D5-5539-01 7 106508822 106508822 G A PIK3CG Silent p.L272L 0.14 TCGA-D5-5539-01 7 138957117 138957117 A G UBN2 Missense_Mutation p.N549S 0.31 tolerated(0.56) benign(0.038) TCGA-D5-5539-01 7 18067133 18067133 G A PRPS1L1 Silent p.C91C 0.41 TCGA-D5-5539-01 7 41729400 41729400 G A INHBA Missense_Mutation p.R377C 0.39 deleterious(0) probably_damaging(0.995) TCGA-D5-5539-01 7 72849595 72849595 G A FZD9 Missense_Mutation p.G420S 0.20 deleterious(0) probably_damaging(1) TCGA-D5-5539-01 7 73152244 73152244 A G ABHD11 Intron 0.08 TCGA-D5-5539-01 7 82544558 82544559 - T PCLO Frame_Shift_Ins p.N4248Kfs*31 0.27 TCGA-D5-5539-01 7 82764321 82764321 C T PCLO Missense_Mutation p.V849I 0.37 unknown(0) TCGA-D5-5539-01 8 131249233 131249233 T C ASAP1 Missense_Mutation p.D65G 0.30 deleterious(0) benign(0.255) TCGA-D5-5539-01 8 1581003 1581003 C T DLGAP2 Missense_Mutation p.A454V 0.17 tolerated(0.86) benign(0.283) TCGA-D5-5539-01 8 24300078 24300078 G A ADAM7 Missense_Mutation p.D49N 0.42 tolerated(0.52) benign(0.009) TCGA-D5-5539-01 8 77763681 77763681 T C ZFHX4 Silent p.S1508S 0.30 TCGA-D5-5539-01 8 93029517 93029517 T A RUNX1T1 Missense_Mutation p.T66S 0.20 tolerated(0.98) benign(0.01) TCGA-D5-5539-01 9 127623796 127623798 CTT - RPL35 In_Frame_Del p.K14del 0.31 TCGA-D5-5539-01 9 32457200 32457200 C T DDX58 Missense_Mutation p.G900R 0.10 tolerated(0.07) benign(0.02) TCGA-D5-5539-01 9 39149889 39149889 G C CNTNAP3 Missense_Mutation p.D521E 0.08 tolerated(0.07) benign(0.309) TCGA-D5-5539-01 9 67926828 67926828 C T ANKRD20A1 5'UTR 0.33 TCGA-D5-5539-01 9 73164494 73164494 G C TRPM3 Nonsense_Mutation p.S1212* 0.61 TCGA-D5-5539-01 X 12939895 12939895 C T TLR8 Silent p.N912N 0.41 TCGA-D5-5539-01 X 70316541 70316541 G A FOXO4 Missense_Mutation p.G55R 0.08 tolerated(0.13) benign(0.041) TCGA-D5-5540-01 10 106075728 106075728 C T ITPRIP Missense_Mutation p.A28T 0.39 tolerated(0.67) benign(0.01) TCGA-D5-5540-01 10 107006999 107006999 A C SORCS3 Missense_Mutation p.L1005F 0.47 deleterious(0) probably_damaging(0.992) TCGA-D5-5540-01 10 121586929 121586929 G A INPP5F Silent p.S1012S 0.49 TCGA-D5-5540-01 10 129866398 129866398 C T PTPRE Silent p.D285D 0.48 TCGA-D5-5540-01 10 14978593 14978593 C A DCLRE1C Splice_Site p.X103_splice 0.55 TCGA-D5-5540-01 10 28284017 28284017 C A ARMC4 Nonsense_Mutation p.G19* 0.50 TCGA-D5-5540-01 10 43615004 43615004 C T RET Silent p.Y806Y 0.41 TCGA-D5-5540-01 10 81697707 81697707 G A SFTPD Silent p.N343N 0.07 TCGA-D5-5540-01 10 91163210 91163210 A T IFIT1 Missense_Mutation p.K393I 0.35 deleterious(0.02) benign(0.275) TCGA-D5-5540-01 11 122817342 122817342 G A C11orf63 Missense_Mutation p.V591I 0.36 tolerated(0.41) benign(0.003) TCGA-D5-5540-01 11 128332182 128332182 C T ETS1 3'UTR 0.42 TCGA-D5-5540-01 11 17632419 17632419 C A OTOG Missense_Mutation p.Q1870K 0.42 benign(0.118) TCGA-D5-5540-01 11 27679733 27679733 G A BDNF Missense_Mutation p.R209W 0.45 deleterious(0) probably_damaging(0.988) TCGA-D5-5540-01 11 55579753 55579753 G T OR5L1 Missense_Mutation p.D271Y 0.38 deleterious(0.02) probably_damaging(0.982) TCGA-D5-5540-01 11 6245653 6245653 C T FAM160A2 Missense_Mutation p.D32N 0.04 deleterious(0) probably_damaging(0.998) TCGA-D5-5540-01 11 64678304 64678304 C T ATG2A Missense_Mutation p.G530D 0.12 tolerated(0.61) benign(0.001) TCGA-D5-5540-01 11 66455339 66455339 C T SPTBN2 Silent p.P2167P 0.42 TCGA-D5-5540-01 11 92616547 92616547 G A FAT3 Missense_Mutation p.A4309T 0.37 benign(0.001) TCGA-D5-5540-01 11 94602577 94602577 G A AMOTL1 Silent p.T901T 0.40 TCGA-D5-5540-01 12 11174853 11174853 A C TAS2R19 Missense_Mutation p.C106W 0.41 deleterious(0) benign(0.001) TCGA-D5-5540-01 12 113823017 113823017 C T PLBD2 Silent p.P405P 0.46 TCGA-D5-5540-01 12 120222113 120222113 G A CIT Intron 0.34 TCGA-D5-5540-01 12 132250832 132250832 G A SFSWAP Silent p.E707E 0.46 TCGA-D5-5540-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.49 deleterious(0) possibly_damaging(0.479) TCGA-D5-5540-01 12 52867044 52867044 G A KRT6C Missense_Mutation p.R160W 0.47 deleterious(0) probably_damaging(0.99) TCGA-D5-5540-01 12 56818671 56818671 C G TIMELESS Silent p.V581V 0.31 TCGA-D5-5540-01 12 69125486 69125486 C A NUP107 Missense_Mutation p.T662N 0.42 tolerated(0.11) benign(0.367) TCGA-D5-5540-01 12 99548222 99548222 C T ANKS1B Intron 0.42 TCGA-D5-5540-01 13 33095542 33095542 A C N4BP2L2 Silent p.T77T 0.62 TCGA-D5-5540-01 13 37679514 37679514 C T CSNK1A1L 5'UTR 0.10 TCGA-D5-5540-01 13 61068603 61068603 G C TDRD3 Missense_Mutation p.R251T 0.56 tolerated(0.15) probably_damaging(0.931) TCGA-D5-5540-01 13 70549919 70549919 G T KLHL1 Silent p.G171G 0.59 TCGA-D5-5540-01 14 100166421 100166421 C A CYP46A1 Missense_Mutation p.D142E 0.81 deleterious(0.01) benign(0.031) TCGA-D5-5540-01 14 19990566 19990566 C G POTEM Silent p.V503V 0.20 TCGA-D5-5540-01 14 23897841 23897841 G A MYH7 Silent p.N482N 0.80 TCGA-D5-5540-01 14 29261403 29261403 C G C14orf23 Missense_Mutation p.S147C 0.71 deleterious_low_confidence(0) benign(0.001) TCGA-D5-5540-01 14 63417240 63417240 C T KCNH5 Missense_Mutation p.R327H 0.75 deleterious(0) probably_damaging(0.992) TCGA-D5-5540-01 15 24925343 24925343 T A NPAP1 3'UTR 0.47 TCGA-D5-5540-01 15 24926953 24926953 T C NPAP1 3'UTR 0.39 TCGA-D5-5540-01 15 31776458 31776458 G A OTUD7A Missense_Mutation p.P607L 0.45 tolerated_low_confidence(0.2) benign(0.034) TCGA-D5-5540-01 15 43022894 43022894 G A CDAN1 Silent p.T692T 0.48 TCGA-D5-5540-01 15 85401518 85401518 T A ALPK3 Silent p.P1385P 0.67 TCGA-D5-5540-01 16 28855623 28855623 G T TUFM Missense_Mutation p.R284S 0.03 deleterious(0.01) probably_damaging(0.929) TCGA-D5-5540-01 16 30198233 30198233 C A CORO1A Missense_Mutation p.H140N 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-D5-5540-01 16 321022 321022 G A RGS11 Missense_Mutation p.R314W 0.81 deleterious(0) probably_damaging(1) TCGA-D5-5540-01 16 48201106 48201106 G A ABCC11 3'UTR 0.48 TCGA-D5-5540-01 16 87678214 87678214 C T JPH3 Missense_Mutation p.R245C 0.55 tolerated(0.22) benign(0.063) TCGA-D5-5540-01 17 1580985 1580985 G A PRPF8 Missense_Mutation p.P620S 0.09 tolerated(0.22) benign(0.053) TCGA-D5-5540-01 17 42882604 42882604 C A GJC1 Silent p.G194G 0.39 TCGA-D5-5540-01 17 51901040 51901040 G A KIF2B Missense_Mutation p.V216I 0.40 deleterious(0) possibly_damaging(0.467) TCGA-D5-5540-01 17 65908188 65908188 A T BPTF Missense_Mutation p.E1396D 0.43 benign(0.012) TCGA-D5-5540-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.78 tolerated(0.11) benign(0.308) TCGA-D5-5540-01 17 78055492 78055492 C T CCDC40 Silent p.T570T 0.39 TCGA-D5-5540-01 18 56246239 56246239 G A ALPK2 Missense_Mutation p.A590V 0.77 tolerated(0.08) benign(0.027) TCGA-D5-5540-01 18 70417417 70417417 T A NETO1 Missense_Mutation p.N474I 0.83 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D5-5540-01 18 7050796 7050796 C T LAMA1 Missense_Mutation p.R162H 0.56 tolerated(0.07) benign(0.036) TCGA-D5-5540-01 19 10747210 10747210 C T SLC44A2 Missense_Mutation p.P482L 0.32 deleterious(0) probably_damaging(0.979) TCGA-D5-5540-01 19 14261849 14261849 C T LPHN1 Missense_Mutation p.E1421K 0.10 deleterious(0.01) possibly_damaging(0.582) TCGA-D5-5540-01 19 17752350 17752350 C T UNC13A Missense_Mutation p.V830M 0.19 deleterious(0.03) possibly_damaging(0.507) TCGA-D5-5540-01 19 18965431 18965431 T C UPF1 Missense_Mutation p.I393T 0.29 deleterious(0) benign(0.39) TCGA-D5-5540-01 19 38125985 38125985 C T ZFP30 Missense_Mutation p.R486K 0.40 tolerated(0.22) probably_damaging(0.995) TCGA-D5-5540-01 19 39299493 39299493 T C LGALS4 Missense_Mutation p.N77S 0.38 deleterious(0.04) probably_damaging(0.996) TCGA-D5-5540-01 19 41349647 41349647 G A CYP2A6 3'UTR 0.84 TCGA-D5-5540-01 19 46271637 46271637 G A SIX5 Missense_Mutation p.H156Y 0.38 tolerated(0.06) benign(0.124) TCGA-D5-5540-01 19 51133148 51133148 T C SYT3 Missense_Mutation p.R319G 0.41 deleterious(0) possibly_damaging(0.585) TCGA-D5-5540-01 19 53793904 53793904 C T BIRC8 5'UTR 0.44 TCGA-D5-5540-01 19 6755042 6755042 C T SH2D3A Missense_Mutation p.E261K 0.57 tolerated(0.17) benign(0.058) TCGA-D5-5540-01 1 118496555 118496555 C T SPAG17 3'UTR 0.80 TCGA-D5-5540-01 1 152188457 152188457 C A HRNR Missense_Mutation p.G1883V 0.09 unknown(0) TCGA-D5-5540-01 1 152279697 152279697 C T FLG Silent p.E2555E 0.22 TCGA-D5-5540-01 1 152279698 152279698 T G FLG Missense_Mutation p.E2555A 0.21 benign(0.02) TCGA-D5-5540-01 1 152279699 152279699 C A FLG Nonsense_Mutation p.E2555* 0.26 TCGA-D5-5540-01 1 152281610 152281610 C A FLG Missense_Mutation p.V1918F 0.11 possibly_damaging(0.727) TCGA-D5-5540-01 1 176668621 176668621 G C PAPPA2 Missense_Mutation p.L1044F 0.48 deleterious(0.02) benign(0.038) TCGA-D5-5540-01 1 201047133 201047133 C T CACNA1S Missense_Mutation p.R498H 0.43 deleterious(0) probably_damaging(1) TCGA-D5-5540-01 1 202861516 202861516 C G KLHL12 3'UTR 0.38 TCGA-D5-5540-01 1 204092031 204092031 G C SOX13 Silent p.R358R 0.58 TCGA-D5-5540-01 1 212548589 212548589 T C TMEM206 Silent p.Q340Q 0.40 TCGA-D5-5540-01 1 22205079 22205079 C T HSPG2 Missense_Mutation p.R850H 0.74 probably_damaging(0.992) TCGA-D5-5540-01 1 223178953 223178953 C T DISP1 Missense_Mutation p.T1405M 0.41 tolerated_low_confidence(0.09) benign(0.003) TCGA-D5-5540-01 1 228538597 228538597 C T OBSCN Silent p.D7081D 0.50 TCGA-D5-5540-01 1 236205355 236205355 G A NID1 Silent p.S330S 0.41 TCGA-D5-5540-01 1 248789635 248789635 G A OR2T11 Silent p.P265P 0.78 TCGA-D5-5540-01 1 9667803 9667803 G A TMEM201 Missense_Mutation p.S450N 0.88 tolerated(1) benign(0.004) TCGA-D5-5540-01 20 12989904 12989904 C G SPTLC3 5'UTR 0.62 TCGA-D5-5540-01 20 33859480 33859480 G A MMP24 Missense_Mutation p.R481H 0.67 tolerated(0.11) probably_damaging(0.994) TCGA-D5-5540-01 20 62631038 62631038 C T PRPF6 Missense_Mutation p.R317C 0.42 tolerated(0.11) benign(0.042) TCGA-D5-5540-01 20 9546762 9546762 G A PAK7 Silent p.S420S 0.31 TCGA-D5-5540-01 21 46117188 46117188 C T KRTAP10-12 Silent p.S24S 0.31 TCGA-D5-5540-01 22 39530449 39530449 C T CBX7 Silent p.A185A 0.86 TCGA-D5-5540-01 22 41560055 41560055 A T EP300 Splice_Site p.X1243_splice 0.42 TCGA-D5-5540-01 22 41560056 41560056 G A EP300 Splice_Site p.X1243_splice 0.42 TCGA-D5-5540-01 22 41560059 41560059 T G EP300 Missense_Mutation p.F1244C 0.44 probably_damaging(0.971) TCGA-D5-5540-01 2 102034063 102034063 T C RFX8 Silent p.K145K 0.40 TCGA-D5-5540-01 2 105924507 105924507 C T TGFBRAP1 Silent p.A84A 0.48 TCGA-D5-5540-01 2 108863679 108863679 C T SULT1C3 Missense_Mutation p.T10M 0.38 tolerated(0.22) benign(0.162) TCGA-D5-5540-01 2 133547620 133547620 G A NCKAP5 Silent p.H356H 0.39 TCGA-D5-5540-01 2 149241368 149241368 C T MBD5 Intron 0.42 TCGA-D5-5540-01 2 159522953 159522953 G A PKP4 Missense_Mutation p.R869Q 0.48 deleterious(0) probably_damaging(0.982) TCGA-D5-5540-01 2 177054021 177054021 G A HOXD1 Silent p.P164P 0.36 TCGA-D5-5540-01 2 179399148 179399148 G A TTN Missense_Mutation p.S34065L 0.58 TCGA-D5-5540-01 2 179480082 179480082 C T TTN Missense_Mutation p.R16197H 0.05 TCGA-D5-5540-01 2 179641293 179641293 A T TTN Silent p.V1766V 0.41 TCGA-D5-5540-01 2 179665379 179665379 C T TTN Missense_Mutation p.R109Q 0.46 TCGA-D5-5540-01 2 18113002 18113002 G T KCNS3 Missense_Mutation p.A243S 0.45 tolerated(0.48) benign(0.287) TCGA-D5-5540-01 2 191379276 191379276 C A TMEM194B Missense_Mutation p.G286C 0.04 deleterious(0) probably_damaging(1) TCGA-D5-5540-01 2 209307105 209307105 G A PTH2R Missense_Mutation p.R143H 0.27 deleterious(0.03) probably_damaging(0.934) TCGA-D5-5540-01 2 219920406 219920412 CCTGTGA TGG IHH Frame_Shift_Del p.R253* 0.59 TCGA-D5-5540-01 2 220500573 220500573 C T SLC4A3 Silent p.F744F 0.70 TCGA-D5-5540-01 2 242814205 242814205 C T CXXC11 Silent p.A166A 0.49 TCGA-D5-5540-01 2 55561235 55561235 G A CCDC88A Missense_Mutation p.R908C 0.43 deleterious(0) probably_damaging(0.999) TCGA-D5-5540-01 2 5836511 5836511 C T SOX11 3'UTR 0.25 TCGA-D5-5540-01 2 95815999 95815999 C T ZNF514 Silent p.R77R 0.32 TCGA-D5-5540-01 3 128979229 128979229 C T COPG1 Missense_Mutation p.R309C 0.06 deleterious(0) probably_damaging(0.996) TCGA-D5-5540-01 3 130409439 130409439 C T PIK3R4 Missense_Mutation p.G1053D 0.78 deleterious(0.04) possibly_damaging(0.56) TCGA-D5-5540-01 3 151155422 151155422 G A IGSF10 Silent p.A2309A 0.42 TCGA-D5-5540-01 3 169940518 169940518 G T PRKCI Missense_Mutation p.D21Y 0.32 tolerated_low_confidence(0.06) possibly_damaging(0.521) TCGA-D5-5540-01 3 178916854 178916854 G A PIK3CA Missense_Mutation p.E81K 0.86 deleterious(0) probably_damaging(1) TCGA-D5-5540-01 3 38592256 38592256 G A SCN5A Silent p.D1869D 0.52 TCGA-D5-5540-01 3 49713879 49713879 C T APEH Silent p.C225C 0.05 TCGA-D5-5540-01 3 50211707 50211707 G A SEMA3F Missense_Mutation p.R127Q 0.49 tolerated(0.16) probably_damaging(1) TCGA-D5-5540-01 3 50357183 50357183 C T HYAL2 Silent p.T246T 0.33 TCGA-D5-5540-01 3 77600056 77600056 C T ROBO2 Missense_Mutation p.R399C 0.47 deleterious(0.01) possibly_damaging(0.898) TCGA-D5-5540-01 4 104003288 104003288 C T BDH2 Missense_Mutation p.A212T 0.57 deleterious(0) possibly_damaging(0.846) TCGA-D5-5540-01 4 120240753 120240753 G A FABP2 Missense_Mutation p.R96W 0.63 deleterious(0) probably_damaging(0.976) TCGA-D5-5540-01 4 13606002 13606002 T C BOD1L1 Missense_Mutation p.K841R 0.62 benign(0.079) TCGA-D5-5540-01 4 155488899 155488899 T C FGB Silent p.D215D 0.08 TCGA-D5-5540-01 4 162577531 162577531 G T FSTL5 Silent p.I281I 0.06 TCGA-D5-5540-01 4 17711009 17711009 G T FAM184B Missense_Mutation p.L134M 0.19 tolerated(0.07) probably_damaging(0.99) TCGA-D5-5540-01 4 187629914 187629914 A C FAT1 Silent p.T356T 0.66 TCGA-D5-5540-01 4 20255602 20255602 G A SLIT2 Missense_Mutation p.R55H 0.54 deleterious(0.02) possibly_damaging(0.828) TCGA-D5-5540-01 4 49005767 49005767 C T CWH43 Missense_Mutation p.A273V 0.18 tolerated(0.5) benign(0.009) TCGA-D5-5540-01 4 6080706 6080706 C T JAKMIP1 Missense_Mutation p.R421H 0.12 tolerated(0.06) benign(0.027) TCGA-D5-5540-01 4 6374292 6374292 G A PPP2R2C Missense_Mutation p.R195C 0.61 deleterious(0) probably_damaging(0.999) TCGA-D5-5540-01 4 69434087 69434087 A G UGT2B17 Missense_Mutation p.M39T 0.13 deleterious(0.02) benign(0.156) TCGA-D5-5540-01 4 71554492 71554492 G T UTP3 Missense_Mutation p.G33V 0.26 deleterious_low_confidence(0.05) benign(0.101) TCGA-D5-5540-01 4 89978265 89978265 T C FAM13A 5'UTR 0.10 TCGA-D5-5540-01 5 112175440 112175441 - T APC Frame_Shift_Ins p.S1385* 0.47 TCGA-D5-5540-01 5 140589305 140589305 G A PCDHB12 Missense_Mutation p.E276K 0.39 tolerated_low_confidence(0.27) benign(0.119) TCGA-D5-5540-01 5 140750418 140750418 G T PCDHGB3 Missense_Mutation p.A153S 0.38 tolerated(0.29) benign(0.011) TCGA-D5-5540-01 5 170235674 170235674 C T GABRP Silent p.Y250Y 0.39 TCGA-D5-5540-01 5 175511925 175511925 G A FAM153B Intron 0.45 TCGA-D5-5540-01 5 180046293 180046293 G A FLT4 Silent p.L907L 0.40 TCGA-D5-5540-01 5 180668638 180668638 C T GNB2L1 Missense_Mutation p.G95S 0.37 deleterious(0.03) possibly_damaging(0.625) TCGA-D5-5540-01 5 3599593 3599593 G T IRX1 Missense_Mutation p.W177C 0.46 deleterious(0) probably_damaging(0.994) TCGA-D5-5540-01 5 40853047 40853047 G T CARD6 Missense_Mutation p.S538I 0.39 deleterious(0.04) benign(0.035) TCGA-D5-5540-01 5 73930575 73930575 G A ENC1 Missense_Mutation p.A579V 0.36 deleterious_low_confidence(0) possibly_damaging(0.676) TCGA-D5-5540-01 6 142409534 142409534 C T NMBR Missense_Mutation p.G88R 0.56 deleterious(0) probably_damaging(1) TCGA-D5-5540-01 6 168465578 168465578 G A FRMD1 Silent p.F207F 0.50 TCGA-D5-5540-01 6 34003712 34003712 C T GRM4 Silent p.S725S 0.77 TCGA-D5-5540-01 6 3850637 3850637 C T FAM50B Missense_Mutation p.R198W 0.85 deleterious(0) probably_damaging(1) TCGA-D5-5540-01 6 41001893 41001893 C T UNC5CL Missense_Mutation p.R138Q 0.91 tolerated(0.53) benign(0.12) TCGA-D5-5540-01 6 74472142 74472142 C T CD109 Missense_Mutation p.T265M 0.42 deleterious(0.01) benign(0.07) TCGA-D5-5540-01 6 88854903 88854903 C T CNR1 Missense_Mutation p.E31K 0.46 deleterious_low_confidence(0.01) benign(0.122) TCGA-D5-5540-01 7 100773745 100773745 C A SERPINE1 Silent p.L105L 0.25 TCGA-D5-5540-01 7 45010506 45010506 C T MYO1G Silent p.S333S 0.29 TCGA-D5-5540-01 7 48685169 48685169 G C ABCA13 3'UTR 0.50 TCGA-D5-5540-01 7 66453359 66453359 C A SBDS Nonstop_Mutation p.*251Lext*11 0.05 TCGA-D5-5540-01 7 93108747 93108747 C T CALCR Missense_Mutation p.V60I 0.04 tolerated(0.31) benign(0.004) TCGA-D5-5540-01 7 94294754 94294754 C T PEG10 3'UTR 0.27 TCGA-D5-5540-01 7 94298039 94298039 C T PEG10 3'UTR 0.33 TCGA-D5-5540-01 7 98628063 98628063 C A SMURF1 3'UTR 0.62 TCGA-D5-5540-01 8 128428185 128428185 C T POU5F1B Missense_Mutation p.A25V 0.45 deleterious(0.03) benign(0.022) TCGA-D5-5540-01 8 142199023 142199023 G C DENND3 Intron 0.24 TCGA-D5-5540-01 8 144994962 144994962 G A PLEC Silent p.D3146D 0.35 TCGA-D5-5540-01 8 17810563 17810563 T C PCM1 Missense_Mutation p.S386P 0.13 deleterious(0) possibly_damaging(0.831) TCGA-D5-5540-01 8 56879351 56879351 G A LYN Missense_Mutation p.E290K 0.26 deleterious(0) probably_damaging(0.934) TCGA-D5-5540-01 8 73849466 73849466 G A KCNB2 Missense_Mutation p.A626T 0.76 tolerated_low_confidence(0.45) benign(0.021) TCGA-D5-5540-01 9 108424896 108424896 A G TAL2 Missense_Mutation p.K40R 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-D5-5540-01 9 140242530 140242530 G A EXD3 Missense_Mutation p.A664V 0.42 deleterious(0) probably_damaging(0.973) TCGA-D5-5540-01 9 72471494 72471494 A G C9orf135 Silent p.E95E 0.49 TCGA-D5-5540-01 9 8389282 8389282 G T PTPRD Missense_Mutation p.Q1446K 0.43 deleterious(0) probably_damaging(0.984) TCGA-D5-5540-01 X 10094325 10094325 G A WWC3 Silent p.P695P 0.75 TCGA-D5-5540-01 X 118223315 118223315 G A KIAA1210 Silent p.F626F 0.73 TCGA-D5-5540-01 X 139866513 139866513 C T CDR1 Missense_Mutation p.V7M 0.89 tolerated(0.71) benign(0) TCGA-D5-5540-01 X 1409370 1409370 T A CSF2RA Missense_Mutation p.F205Y 0.39 tolerated(0.06) probably_damaging(0.936) TCGA-D5-5540-01 X 44703558 44703558 C T DUSP21 Silent p.N60N 0.90 TCGA-D5-5540-01 X 66937461 66937461 A G AR Missense_Mutation p.N772S 0.12 deleterious(0.03) probably_damaging(0.988) TCGA-D5-5540-01 X 83129587 83129587 T A CYLC1 Missense_Mutation p.L624H 0.87 deleterious(0) possibly_damaging(0.487) TCGA-D5-5541-01 10 100193828 100193828 G A HPS1 Missense_Mutation p.A140V 0.38 deleterious(0.04) benign(0.075) TCGA-D5-5541-01 10 50863174 50863174 C T CHAT Silent p.S556S 0.31 TCGA-D5-5541-01 10 64573219 64573219 G A EGR2 Silent p.T393T 0.34 TCGA-D5-5541-01 11 36424868 36424868 A G PRR5L Missense_Mutation p.N62S 0.45 tolerated(0.39) benign(0.254) TCGA-D5-5541-01 11 57003977 57003977 G A APLNR Missense_Mutation p.R168C 0.56 deleterious(0) probably_damaging(1) TCGA-D5-5541-01 11 64677173 64677173 A G ATG2A Missense_Mutation p.L696P 0.08 deleterious(0) possibly_damaging(0.724) TCGA-D5-5541-01 11 68204451 68204451 C T LRP5 Silent p.S1365S 0.25 TCGA-D5-5541-01 11 78387403 78387403 C T TENM4 Missense_Mutation p.A1764T 0.12 tolerated(0.39) benign(0.084) TCGA-D5-5541-01 12 109972419 109972419 C T UBE3B Silent p.S1013S 0.30 TCGA-D5-5541-01 12 27915891 27915891 C T MANSC4 Missense_Mutation p.R268K 0.06 tolerated(0.12) benign(0.015) TCGA-D5-5541-01 12 40959526 40959526 C G MUC19 3'UTR 0.15 TCGA-D5-5541-01 12 48723199 48723199 C T H1FNT Missense_Mutation p.A42V 0.44 tolerated(0.42) benign(0.008) TCGA-D5-5541-01 12 50501386 50501386 C T GPD1 Silent p.L217L 0.07 TCGA-D5-5541-01 12 52883744 52883744 C T KRT6A Missense_Mutation p.D396N 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-D5-5541-01 12 52960828 52960828 C T KRT74 Silent p.A505A 0.14 TCGA-D5-5541-01 12 77423895 77423895 C A E2F7 Nonsense_Mutation p.E534* 0.27 TCGA-D5-5541-01 12 77423896 77423896 C A E2F7 Silent p.V533V 0.29 TCGA-D5-5541-01 13 101707798 101707798 C T NALCN Missense_Mutation p.R1689Q 0.57 tolerated_low_confidence(0.25) benign(0.008) TCGA-D5-5541-01 13 38320195 38320195 G A TRPC4 Missense_Mutation p.T259M 0.04 deleterious(0) probably_damaging(0.994) TCGA-D5-5541-01 15 29091076 29091076 T C GOLGA6L7P RNA 0.33 TCGA-D5-5541-01 15 63419630 63419630 G A LACTB Missense_Mutation p.E232K 0.30 tolerated(0.14) benign(0.401) TCGA-D5-5541-01 15 72643365 72643365 T C HEXA Intron 0.19 TCGA-D5-5541-01 15 91510295 91510295 C T PRC1 3'UTR 0.42 TCGA-D5-5541-01 16 10788330 10788330 T C TEKT5 Missense_Mutation p.Q134R 0.12 deleterious(0) possibly_damaging(0.883) TCGA-D5-5541-01 16 11217633 11217633 G A CLEC16A Missense_Mutation p.R768H 0.44 deleterious(0) probably_damaging(0.999) TCGA-D5-5541-01 16 2260149 2260149 G A BRICD5 Missense_Mutation p.A105V 0.30 tolerated(1) benign(0.012) TCGA-D5-5541-01 16 25143807 25143807 T A LCMT1 Missense_Mutation p.L97H 0.40 deleterious(0) probably_damaging(0.999) TCGA-D5-5541-01 16 29127484 29127484 C T RP11-426C22.5 RNA 0.41 TCGA-D5-5541-01 16 30667615 30667615 C T PRR14 Nonsense_Mutation p.Q581* 0.25 TCGA-D5-5541-01 16 50707334 50707334 G A SNX20 Nonsense_Mutation p.R312* 0.42 TCGA-D5-5541-01 16 67914712 67914712 C T EDC4 Missense_Mutation p.R784W 0.07 deleterious(0) possibly_damaging(0.828) TCGA-D5-5541-01 16 80667007 80667007 C T CDYL2 Missense_Mutation p.R248Q 0.13 deleterious(0.01) probably_damaging(0.961) TCGA-D5-5541-01 17 48598490 48598490 C T MYCBPAP Silent p.D355D 0.34 TCGA-D5-5541-01 17 72363635 72363635 G A GPR142 5'UTR 0.31 TCGA-D5-5541-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.73 tolerated(0.13) possibly_damaging(0.631) TCGA-D5-5541-01 18 67508546 67508546 G A DOK6 Missense_Mutation p.S308N 0.60 tolerated_low_confidence(0.28) benign(0.001) TCGA-D5-5541-01 19 37369888 37369888 G A ZNF345 3'UTR 0.37 TCGA-D5-5541-01 19 42398552 42398552 C T ARHGEF1 Missense_Mutation p.P273L 0.10 deleterious(0.01) possibly_damaging(0.628) TCGA-D5-5541-01 19 50957408 50957408 C T MYBPC2 Silent p.D627D 0.31 TCGA-D5-5541-01 19 55880192 55880192 G A IL11 Missense_Mutation p.T42I 0.49 tolerated(0.62) benign(0.005) TCGA-D5-5541-01 1 145457000 145457002 TTC - POLR3GL In_Frame_Del p.E187del 0.43 TCGA-D5-5541-01 1 152734236 152734236 G T KPRP 3'UTR 0.34 TCGA-D5-5541-01 1 197072417 197072417 C T ASPM Silent p.K1988K 0.35 TCGA-D5-5541-01 1 228470802 228470802 C T OBSCN Missense_Mutation p.R3281W 0.42 probably_damaging(0.978) TCGA-D5-5541-01 1 27057796 27057796 C T ARID1A Nonsense_Mutation p.Q502* 0.42 TCGA-D5-5541-01 1 34112409 34112409 A T CSMD2 Missense_Mutation p.F1498Y 0.40 deleterious(0.03) probably_damaging(1) TCGA-D5-5541-01 20 2321117 2321117 C T TGM3 Missense_Mutation p.R658C 0.60 tolerated(0.05) benign(0.091) TCGA-D5-5541-01 20 34214013 34214013 T C CPNE1 3'UTR 0.77 TCGA-D5-5541-01 20 45874939 45874939 T G ZMYND8 Silent p.A699A 0.10 TCGA-D5-5541-01 20 4781697 4781697 G A RASSF2 5'UTR 0.56 TCGA-D5-5541-01 20 53266996 53266996 C A DOK5 Missense_Mutation p.P300Q 0.78 deleterious_low_confidence(0.03) benign(0.115) TCGA-D5-5541-01 20 60892034 60892034 G A LAMA5 Silent p.I2519I 0.12 TCGA-D5-5541-01 20 6096691 6096691 T G FERMT1 Missense_Mutation p.N51T 0.29 tolerated(0.06) benign(0.007) TCGA-D5-5541-01 21 22664431 22664431 C T NCAM2 Silent p.F163F 0.30 TCGA-D5-5541-01 22 30163484 30163484 G A UQCR10 Missense_Mutation p.E33K 0.38 deleterious(0.03) probably_damaging(0.962) TCGA-D5-5541-01 22 43606062 43606062 G A SCUBE1 Silent p.V856V 0.11 TCGA-D5-5541-01 22 46658052 46658052 G T PKDREJ Silent p.R390R 0.06 TCGA-D5-5541-01 2 128754003 128754003 C T SAP130 Missense_Mutation p.E452K 0.45 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-D5-5541-01 2 179456607 179456607 G A TTN Missense_Mutation p.P19980L 0.58 TCGA-D5-5541-01 2 211512767 211512767 G T CPS1 Missense_Mutation p.A1114S 0.22 tolerated(0.08) possibly_damaging(0.545) TCGA-D5-5541-01 2 21250703 21250703 G C APOB Missense_Mutation p.I688M 0.12 benign(0.014) TCGA-D5-5541-01 2 241463442 241463442 G A ANKMY1 Silent p.C475C 0.27 TCGA-D5-5541-01 2 24933967 24933967 T C NCOA1 Silent p.T862T 0.30 TCGA-D5-5541-01 2 24933969 24933969 C T NCOA1 Missense_Mutation p.S863F 0.30 tolerated(0.07) benign(0.044) TCGA-D5-5541-01 2 37873459 37873459 G A CDC42EP3 Missense_Mutation p.S91L 0.30 deleterious(0.04) benign(0.116) TCGA-D5-5541-01 2 42990345 42990345 G A OXER1 Silent p.S325S 0.30 TCGA-D5-5541-01 2 54028912 54028912 C T ERLEC1 Missense_Mutation p.P271L 0.06 deleterious(0) probably_damaging(1) TCGA-D5-5541-01 2 5839877 5839877 C A SOX11 3'UTR 0.53 TCGA-D5-5541-01 2 99012480 99012480 C T CNGA3 Missense_Mutation p.R283W 0.09 deleterious(0) probably_damaging(1) TCGA-D5-5541-01 3 195610182 195610182 T C TNK2 Splice_Site p.X216_splice 0.41 TCGA-D5-5541-01 3 49212314 49212314 G A KLHDC8B Silent p.L227L 0.50 TCGA-D5-5541-01 3 50608539 50608539 G C HEMK1 Missense_Mutation p.E2Q 0.13 tolerated_low_confidence(0.25) benign(0.051) TCGA-D5-5541-01 3 69986987 69986987 C T MITF Silent p.L123L 0.38 TCGA-D5-5541-01 4 147561811 147561811 G A POU4F2 Missense_Mutation p.E361K 0.37 deleterious(0) benign(0.109) TCGA-D5-5541-01 4 55565910 55565910 C T KIT Missense_Mutation p.T245M 0.28 tolerated(0.14) benign(0) TCGA-D5-5541-01 5 112175765 112175770 GCCACG CCACA APC Frame_Shift_Del p.A1492Pfs*15 0.42 TCGA-D5-5541-01 5 140536175 140536175 C T PCDHB17 Missense_Mutation p.A200V 0.50 tolerated_low_confidence(0.14) benign(0.142) TCGA-D5-5541-01 5 149915419 149915419 G A NDST1 Missense_Mutation p.R470H 0.73 deleterious(0) probably_damaging(0.969) TCGA-D5-5541-01 5 154191114 154191114 T G LARP1 Missense_Mutation p.Y922D 0.43 deleterious(0) probably_damaging(0.999) TCGA-D5-5541-01 5 156922 156922 C T PLEKHG4B Nonsense_Mutation p.R439* 0.29 TCGA-D5-5541-01 5 37243146 37243146 G A C5orf42 Missense_Mutation p.R216W 0.06 deleterious(0) probably_damaging(0.931) TCGA-D5-5541-01 6 152510503 152510503 T A SYNE1 Missense_Mutation p.T7729S 0.29 benign(0) TCGA-D5-5541-01 6 28297346 28297346 G A ZSCAN31 Nonsense_Mutation p.R39* 0.46 TCGA-D5-5541-01 6 30458944 30458944 C T HLA-E Missense_Mutation p.P214L 0.34 deleterious_low_confidence(0.01) benign(0.009) TCGA-D5-5541-01 7 141646059 141646059 C T CLEC5A Missense_Mutation p.V12M 0.16 deleterious(0) possibly_damaging(0.824) TCGA-D5-5541-01 7 78150858 78150858 G A MAGI2 Missense_Mutation p.R215W 0.56 deleterious(0) probably_damaging(0.999) TCGA-D5-5541-01 8 136619256 136619256 A G KHDRBS3 Missense_Mutation p.N289S 0.08 tolerated(0.35) probably_damaging(0.987) TCGA-D5-5541-01 8 142204197 142204197 C T DENND3 Silent p.A1154A 0.13 TCGA-D5-5541-01 8 39695695 39695695 C T ADAM2 Missense_Mutation p.V4I 0.11 tolerated(0.3) benign(0.001) TCGA-D5-5541-01 8 71039198 71039198 G A NCOA2 Nonsense_Mutation p.Q1256* 0.16 TCGA-D5-5541-01 9 101908873 101908873 C T TGFBR1 Nonsense_Mutation p.R413* 0.36 TCGA-D5-5541-01 9 35616514 35616514 C T CD72 Intron 0.17 TCGA-D5-5541-01 X 125955143 125955143 G A CXorf64 Silent p.R174R 0.89 TCGA-D5-6529-01 10 115350603 115350603 C T NRAP Missense_Mutation p.G1564R 0.15 deleterious(0.01) benign(0.334) TCGA-D5-6529-01 10 117849335 117849335 G A GFRA1 Missense_Mutation p.R372W 0.27 tolerated(0.08) possibly_damaging(0.881) TCGA-D5-6529-01 10 134006244 134006244 G A DPYSL4 Missense_Mutation p.D71N 0.42 deleterious(0.01) probably_damaging(1) TCGA-D5-6529-01 10 13824937 13824937 C G FRMD4A Missense_Mutation p.K123N 0.12 deleterious(0) probably_damaging(0.989) TCGA-D5-6529-01 10 28151370 28151370 G T ARMC4 Missense_Mutation p.A931E 0.16 deleterious(0.01) probably_damaging(0.948) TCGA-D5-6529-01 10 72358408 72358408 G A PRF1 Missense_Mutation p.R357W 0.11 deleterious(0) probably_damaging(0.995) TCGA-D5-6529-01 10 75553464 75553464 C T ZSWIM8 Missense_Mutation p.P811L 0.23 tolerated(0.48) benign(0.054) TCGA-D5-6529-01 11 105845191 105845191 C A GRIA4 Intron 0.23 TCGA-D5-6529-01 11 118376683 118376683 C T KMT2A Missense_Mutation p.A3359V 0.24 benign(0.079) TCGA-D5-6529-01 11 4842928 4842928 G T OR51F2 Nonsense_Mutation p.E105* 0.19 TCGA-D5-6529-01 11 5444320 5444320 A G OR51Q1 Missense_Mutation p.K297R 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-D5-6529-01 11 78600839 78600839 A G TENM4 Missense_Mutation p.Y359H 0.19 deleterious(0) probably_damaging(0.992) TCGA-D5-6529-01 12 10218388 10218388 T C CLEC9A 3'UTR 0.18 TCGA-D5-6529-01 12 108604003 108604003 C T WSCD2 Silent p.G201G 0.14 TCGA-D5-6529-01 12 109577763 109577763 C T ACACB Missense_Mutation p.R185C 0.12 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-D5-6529-01 12 10962055 10962058 CTAA - TAS2R9 Frame_Shift_Del p.V206Dfs*22 0.11 TCGA-D5-6529-01 12 22796862 22796862 C T ETNK1 Nonsense_Mutation p.Q197* 0.32 TCGA-D5-6529-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.34 deleterious(0.04) possibly_damaging(0.506) TCGA-D5-6529-01 12 40734148 40734148 C T LRRK2 Silent p.L2001L 0.09 TCGA-D5-6529-01 12 49412601 49412601 G T PRKAG1 5'Flank 0.18 TCGA-D5-6529-01 12 5153654 5153654 C T KCNA5 Missense_Mutation p.T114M 0.15 tolerated(0.08) benign(0.068) TCGA-D5-6529-01 12 52714915 52714915 C T KRT83 Missense_Mutation p.G69S 0.36 tolerated(0.06) probably_damaging(0.935) TCGA-D5-6529-01 12 53342898 53342898 G A KRT18 5'UTR 0.21 TCGA-D5-6529-01 12 80928678 80928678 C T PTPRQ Silent p.S945S 0.13 TCGA-D5-6529-01 13 28196057 28196057 C T POLR1D 5'UTR 0.52 TCGA-D5-6529-01 13 84456131 84456131 G A SLITRK1 5'UTR 0.12 TCGA-D5-6529-01 14 29236587 29236587 C T FOXG1 Silent p.H34H 0.24 TCGA-D5-6529-01 14 38724946 38724946 G A CLEC14A Silent p.V94V 0.38 TCGA-D5-6529-01 14 61186732 61186732 G C SIX4 Missense_Mutation p.T432S 0.13 tolerated(0.26) benign(0) TCGA-D5-6529-01 14 64700070 64700072 CCT - ESR2 Intron 0.39 TCGA-D5-6529-01 14 65216716 65216718 CTT - SPTB In_Frame_Del p.K2253del 0.12 TCGA-D5-6529-01 15 25963545 25963545 C T ATP10A Silent p.A455A 0.35 TCGA-D5-6529-01 15 55974601 55974601 G A PRTG Nonsense_Mutation p.R213* 0.26 TCGA-D5-6529-01 15 59499329 59499329 G A LDHAL6B Missense_Mutation p.E64K 0.28 tolerated(0.07) benign(0.004) TCGA-D5-6529-01 15 67358639 67358639 C T SMAD3 Silent p.D49D 0.29 TCGA-D5-6529-01 15 81666359 81666359 G A TMC3 Silent p.C20C 0.20 TCGA-D5-6529-01 15 89868782 89868782 C T POLG Silent p.E616E 0.20 TCGA-D5-6529-01 16 15715684 15715684 C T KIAA0430 Missense_Mutation p.A849T 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6529-01 16 25232887 25232887 G A AQP8 Missense_Mutation p.G124R 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6529-01 16 3713341 3713341 C T TRAP1 Intron 0.13 TCGA-D5-6529-01 17 27934785 27934785 G A ANKRD13B Missense_Mutation p.R47H 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6529-01 17 2996130 2996130 C T OR1D2 Missense_Mutation p.R54H 0.30 tolerated(1) benign(0.001) TCGA-D5-6529-01 17 32956104 32956104 C T TMEM132E Missense_Mutation p.R317W 0.18 deleterious(0) probably_damaging(0.982) TCGA-D5-6529-01 17 37829375 37829375 C T PGAP3 Silent p.P276P 0.10 TCGA-D5-6529-01 17 39296267 39296267 C G KRTAP4-6 Missense_Mutation p.S158T 0.12 tolerated(0.29) unknown(0) TCGA-D5-6529-01 17 61513111 61513111 C A CYB561 Missense_Mutation p.A115S 0.18 tolerated(0.14) benign(0.205) TCGA-D5-6529-01 17 66890339 66890339 C A ABCA8 Missense_Mutation p.R964L 0.09 deleterious(0) benign(0.175) TCGA-D5-6529-01 17 79094123 79094123 G A AATK Missense_Mutation p.R1205C 0.23 deleterious(0) probably_damaging(0.939) TCGA-D5-6529-01 18 14478581 14478581 G A CXADRP3 RNA 0.27 TCGA-D5-6529-01 18 55359198 55359198 C T ATP8B1 Missense_Mutation p.G354D 0.09 deleterious(0.01) probably_damaging(1) TCGA-D5-6529-01 18 56586800 56586800 G A ZNF532 Silent p.A427A 0.19 TCGA-D5-6529-01 18 72347614 72347614 C T ZNF407 Nonsense_Mutation p.R1547* 0.16 TCGA-D5-6529-01 19 14829217 14829217 C T ZNF333 Missense_Mutation p.R360C 0.13 tolerated(0.2) benign(0.041) TCGA-D5-6529-01 19 15559007 15559007 C T WIZ Missense_Mutation p.E38K 0.20 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-D5-6529-01 19 16799084 16799084 G A TMEM38A Missense_Mutation p.G268S 0.19 tolerated(0.94) benign(0.002) TCGA-D5-6529-01 19 30935013 30935013 C T ZNF536 Silent p.L182L 0.17 TCGA-D5-6529-01 19 30935610 30935610 C T ZNF536 Missense_Mutation p.R381C 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-D5-6529-01 19 41709490 41709490 T A CYP2S1 Missense_Mutation p.I371K 0.35 deleterious(0) possibly_damaging(0.582) TCGA-D5-6529-01 19 50512490 50512491 - A VRK3 Intron 0.23 TCGA-D5-6529-01 19 50946810 50946810 C T MYBPC2 Missense_Mutation p.A321V 0.26 deleterious(0.04) probably_damaging(0.987) TCGA-D5-6529-01 19 5215539 5215539 G A PTPRS Silent p.N1388N 0.15 TCGA-D5-6529-01 19 52869650 52869650 C T ZNF610 Missense_Mutation p.A340V 0.10 deleterious(0) possibly_damaging(0.671) TCGA-D5-6529-01 19 55285017 55285017 C T KIR2DL1 Silent p.Y101Y 0.58 TCGA-D5-6529-01 19 55450407 55450407 T - NLRP7 Frame_Shift_Del p.I594Ffs*5 0.21 TCGA-D5-6529-01 1 11709876 11709876 G C FBXO2 Missense_Mutation p.L193V 0.15 deleterious(0.02) benign(0.366) TCGA-D5-6529-01 1 149858210 149858210 G A HIST2H2BE 5'UTR 0.17 TCGA-D5-6529-01 1 149916814 149916814 G A OTUD7B Missense_Mutation p.R492W 0.13 deleterious(0) possibly_damaging(0.487) TCGA-D5-6529-01 1 152079916 152079916 C T TCHH Missense_Mutation p.R1926H 0.18 possibly_damaging(0.522) TCGA-D5-6529-01 1 165370598 165370598 T C RXRG Missense_Mutation p.K432E 0.15 deleterious(0) probably_damaging(0.998) TCGA-D5-6529-01 1 176709306 176709306 C T PAPPA2 Silent p.D1375D 0.18 TCGA-D5-6529-01 1 186158886 186158886 G A HMCN1 Missense_Mutation p.R5595Q 0.19 benign(0.003) TCGA-D5-6529-01 1 186413111 186413111 T G PDC Nonstop_Mutation p.*247Cext*16 0.13 TCGA-D5-6529-01 1 19491472 19491472 C T UBR4 Silent p.P1444P 0.14 TCGA-D5-6529-01 1 204943329 204943329 G A NFASC Silent p.S434S 0.30 TCGA-D5-6529-01 1 236156996 236156996 C T NID1 Missense_Mutation p.D902N 0.35 tolerated(0.46) benign(0.006) TCGA-D5-6529-01 1 240351542 240351542 C T FMN2 Missense_Mutation p.R656C 0.31 unknown(0) TCGA-D5-6529-01 1 244624749 244624749 G A C1orf101 Silent p.V6V 0.11 TCGA-D5-6529-01 1 27875812 27875812 G A AHDC1 Missense_Mutation p.R939W 0.20 deleterious(0) possibly_damaging(0.835) TCGA-D5-6529-01 1 33797949 33797950 - AACCC PHC2 Frame_Shift_Ins p.F605Lfs*128 0.24 TCGA-D5-6529-01 1 51871753 51871753 C A EPS15 Missense_Mutation p.D501Y 0.19 deleterious(0.01) benign(0.353) TCGA-D5-6529-01 20 30742960 30742960 T C TM9SF4 Missense_Mutation p.F434L 0.21 tolerated(0.78) probably_damaging(0.914) TCGA-D5-6529-01 21 34444385 34444385 T G OLIG1 3'UTR 0.20 TCGA-D5-6529-01 21 37785464 37785464 C T CHAF1B Silent p.D448D 0.22 TCGA-D5-6529-01 22 30857314 30857314 C A SEC14L3 Missense_Mutation p.C355F 0.22 deleterious(0) probably_damaging(0.97) TCGA-D5-6529-01 22 38228712 38228712 G - ANKRD54 Frame_Shift_Del p.Q254Nfs*17 0.16 TCGA-D5-6529-01 22 44582571 44582571 C T PARVG Intron 0.16 TCGA-D5-6529-01 22 49145683 49145683 C T FAM19A5 3'UTR 0.17 TCGA-D5-6529-01 2 101874337 101874337 C T CNOT11 Missense_Mutation p.T200M 0.20 deleterious(0.05) possibly_damaging(0.535) TCGA-D5-6529-01 2 12864834 12864834 G A TRIB2 Intron 0.13 TCGA-D5-6529-01 2 135745491 135745491 G C MAP3K19 Missense_Mutation p.N317K 0.13 tolerated(0.36) benign(0.05) TCGA-D5-6529-01 2 145157632 145157632 C A ZEB2 Missense_Mutation p.E374D 0.08 tolerated(0.11) possibly_damaging(0.562) TCGA-D5-6529-01 2 152402956 152402956 A G NEB Missense_Mutation p.I6790T 0.16 possibly_damaging(0.524) TCGA-D5-6529-01 2 1544493 1544493 C A TPO Missense_Mutation p.Q916K 0.14 tolerated_low_confidence(0.29) benign(0.039) TCGA-D5-6529-01 2 166245635 166245635 G A SCN2A Silent p.A1773A 0.13 TCGA-D5-6529-01 2 170048527 170048527 C T LRP2 Silent p.S2949S 0.16 TCGA-D5-6529-01 2 170066149 170066149 G A LRP2 Nonsense_Mutation p.R2095* 0.15 TCGA-D5-6529-01 2 180634372 180634372 C G ZNF385B Missense_Mutation p.E37D 0.12 tolerated(0.32) benign(0.017) TCGA-D5-6529-01 2 207345981 207345981 T G ADAM23 Missense_Mutation p.F153C 0.15 deleterious(0) probably_damaging(0.959) TCGA-D5-6529-01 2 215880212 215880212 G T ABCA12 Splice_Site p.X652_splice 0.11 TCGA-D5-6529-01 2 223086070 223086070 G A PAX3 Nonsense_Mutation p.Q277* 0.22 TCGA-D5-6529-01 2 227895190 227895190 A G COL4A4 Silent p.F1314F 0.16 TCGA-D5-6529-01 2 242435859 242435859 C T STK25 Missense_Mutation p.G399S 0.18 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-D5-6529-01 2 24888620 24888620 C T NCOA1 Missense_Mutation p.T31M 0.10 tolerated(0.06) benign(0.032) TCGA-D5-6529-01 2 26358010 26358010 C T RAB10 3'UTR 0.24 TCGA-D5-6529-01 2 43657416 43657416 G C THADA Missense_Mutation p.R1288G 0.24 deleterious(0) probably_damaging(0.986) TCGA-D5-6529-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.33 deleterious(0.01) probably_damaging(0.964) TCGA-D5-6529-01 3 101298668 101298668 T C PCNP Silent p.T33T 0.15 TCGA-D5-6529-01 3 129247885 129247885 C T RHO Silent p.F103F 0.22 TCGA-D5-6529-01 3 134256014 134256014 G A CEP63 Silent p.S153S 0.24 TCGA-D5-6529-01 3 150661734 150661734 G T CLRN1 Intron 0.16 TCGA-D5-6529-01 3 151082838 151082838 A G MED12L Missense_Mutation p.D975G 0.20 deleterious(0.02) possibly_damaging(0.772) TCGA-D5-6529-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-D5-6529-01 4 149002351 149002351 A G NR3C2 3'UTR 0.18 TCGA-D5-6529-01 4 155298498 155298498 G A DCHS2 Silent p.I111I 0.09 TCGA-D5-6529-01 5 118465111 118465111 T C DMXL1 Silent p.S436S 0.16 TCGA-D5-6529-01 5 118465112 118465112 G T DMXL1 Missense_Mutation p.D437Y 0.17 deleterious(0) probably_damaging(0.95) TCGA-D5-6529-01 5 1219159 1219159 G A SLC6A19 Missense_Mutation p.V439I 0.28 tolerated(0.43) benign(0.26) TCGA-D5-6529-01 5 122491674 122491674 G A PRDM6 Missense_Mutation p.G333R 0.15 tolerated(0.13) benign(0.192) TCGA-D5-6529-01 5 129520538 129520538 G A CHSY3 Missense_Mutation p.S568N 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-D5-6529-01 5 138208916 138208916 C T LRRTM2 Missense_Mutation p.R445K 0.17 deleterious(0.02) possibly_damaging(0.688) TCGA-D5-6529-01 5 140187389 140187389 C T PCDHA4 Missense_Mutation p.P206L 0.30 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-D5-6529-01 5 140229984 140229984 G A PCDHA9 Missense_Mutation p.R635H 0.22 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-D5-6529-01 5 140249363 140249363 C T PCDHA11 Silent p.T225T 0.19 TCGA-D5-6529-01 5 140529760 140529760 G C PCDHB6 5'Flank 0.12 TCGA-D5-6529-01 5 140559226 140559226 C T PCDHB8 Silent p.R537R 0.10 TCGA-D5-6529-01 5 172341999 172341999 G T ERGIC1 Intron 0.15 TCGA-D5-6529-01 5 177166132 177166132 C T FAM153A Missense_Mutation p.A105T 0.16 tolerated_low_confidence(1) benign(0) TCGA-D5-6529-01 5 178541177 178541177 C T ADAMTS2 Silent p.P1109P 0.16 TCGA-D5-6529-01 5 178579179 178579179 C G ADAMTS2 Silent p.G531G 0.41 TCGA-D5-6529-01 5 33944928 33944928 C A SLC45A2 Missense_Mutation p.G473V 0.32 deleterious(0) probably_damaging(1) TCGA-D5-6529-01 6 110301239 110301239 G A GPR6 Silent p.A308A 0.31 TCGA-D5-6529-01 6 138601166 138601166 G A KIAA1244 Missense_Mutation p.G776S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6529-01 6 146720570 146720570 C A GRM1 Missense_Mutation p.L799I 0.33 tolerated(0.2) possibly_damaging(0.679) TCGA-D5-6529-01 6 28543667 28543667 C T SCAND3 Missense_Mutation p.R272H 0.07 tolerated_low_confidence(0.34) benign(0.002) TCGA-D5-6529-01 6 73904233 73904233 G A KCNQ5 Missense_Mutation p.R651Q 0.12 tolerated(0.33) benign(0.354) TCGA-D5-6529-01 6 97053921 97053921 G A FHL5 Missense_Mutation p.A160T 0.34 deleterious(0.01) possibly_damaging(0.858) TCGA-D5-6529-01 7 117450854 117450854 C T CTTNBP2 Missense_Mutation p.A127T 0.12 tolerated(0.42) benign(0.03) TCGA-D5-6529-01 7 48353921 48353921 C T ABCA13 Silent p.S3258S 0.16 TCGA-D5-6529-01 7 98254384 98254384 G A NPTX2 Missense_Mutation p.G265D 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6529-01 8 142500350 142500350 C T MROH5 3'Flank 0.33 TCGA-D5-6529-01 8 144332293 144332293 C T ZFP41 Missense_Mutation p.R94W 0.10 tolerated(0.05) benign(0.024) TCGA-D5-6529-01 8 145726934 145726934 A G PPP1R16A Missense_Mutation p.N412S 0.13 tolerated(0.24) possibly_damaging(0.659) TCGA-D5-6529-01 8 146075919 146075919 G A COMMD5 3'UTR 0.17 TCGA-D5-6529-01 8 146278006 146278006 C T C8orf33 Missense_Mutation p.A14V 0.15 tolerated_low_confidence(0.21) unknown(0) TCGA-D5-6529-01 8 75927084 75927084 C T CRISPLD1 Missense_Mutation p.R222W 0.26 deleterious(0) benign(0.339) TCGA-D5-6529-01 8 86572539 86572539 C T REXO1L1P 3'UTR 0.46 TCGA-D5-6529-01 8 89209458 89209458 C T MMP16 Silent p.Q70Q 0.16 TCGA-D5-6529-01 9 104449017 104449017 C T GRIN3A Missense_Mutation p.V389I 0.17 tolerated(0.7) benign(0.292) TCGA-D5-6529-01 9 138516210 138516210 G A GLT6D1 Silent p.G188G 0.13 TCGA-D5-6529-01 9 88952253 88952253 G C ZCCHC6 Intron 0.22 TCGA-D5-6529-01 X 102755508 102755508 G A RAB40A Silent p.D59D 0.25 TCGA-D5-6529-01 X 105868375 105868375 C T CXorf57 Missense_Mutation p.A281V 0.22 tolerated(0.06) benign(0.173) TCGA-D5-6529-01 X 151900242 151900242 C T MAGEA12 Missense_Mutation p.D187N 0.28 tolerated(0.18) benign(0.251) TCGA-D5-6529-01 X 17746118 17746118 G A NHS Missense_Mutation p.E1277K 0.57 tolerated_low_confidence(0.44) benign(0.001) TCGA-D5-6530-01 10 100177965 100177965 A T HPS1 Missense_Mutation p.V636E 0.36 deleterious(0.01) possibly_damaging(0.628) TCGA-D5-6530-01 10 101147922 101147922 C T CNNM1 Silent p.D846D 0.34 TCGA-D5-6530-01 10 101993073 101993073 G A CWF19L1 Nonsense_Mutation p.Q510* 0.35 TCGA-D5-6530-01 10 102114305 102114305 G A SCD Missense_Mutation p.R188H 0.37 deleterious(0.01) probably_damaging(1) TCGA-D5-6530-01 10 105206816 105206817 - A CALHM2 3'UTR 0.30 TCGA-D5-6530-01 10 105363391 105363391 G - SH3PXD2A Frame_Shift_Del p.S501Afs*43 0.39 TCGA-D5-6530-01 10 111987978 111987978 G A MXI1 Silent p.P102P 0.35 TCGA-D5-6530-01 10 114298051 114298051 G A VTI1A Missense_Mutation p.R130Q 0.28 tolerated(0.06) possibly_damaging(0.49) TCGA-D5-6530-01 10 115350471 115350471 C T NRAP Missense_Mutation p.G1608S 0.38 tolerated(1) benign(0.031) TCGA-D5-6530-01 10 115526229 115526229 T C PLEKHS1 Missense_Mutation p.S24P 0.34 deleterious(0) probably_damaging(0.997) TCGA-D5-6530-01 10 115618299 115618299 T C NHLRC2 Missense_Mutation p.L64P 0.35 deleterious(0) probably_damaging(0.971) TCGA-D5-6530-01 10 118960768 118960769 TT - KCNK18 Frame_Shift_Del p.F109Lfs*55 0.24 TCGA-D5-6530-01 10 118969446 118969446 C T KCNK18 Missense_Mutation p.S264F 0.03 deleterious(0.01) benign(0.045) TCGA-D5-6530-01 10 120450776 120450776 C T CACUL1 Splice_Site p.X342_splice 0.34 TCGA-D5-6530-01 10 120824996 120824996 C A EIF3A Missense_Mutation p.G346V 0.30 tolerated(0.05) unknown(0) TCGA-D5-6530-01 10 123263410 123263410 C T FGFR2 Missense_Mutation p.V446M 0.34 tolerated(0.14) probably_damaging(0.999) TCGA-D5-6530-01 10 123733731 123733731 T - NSMCE4A Intron 0.21 TCGA-D5-6530-01 10 124089066 124089066 G A BTBD16 Missense_Mutation p.R328H 0.36 deleterious(0.01) benign(0.337) TCGA-D5-6530-01 10 124338244 124338244 T G DMBT1 Silent p.P216P 0.35 TCGA-D5-6530-01 10 127412385 127412385 A - EDRF1 Frame_Shift_Del p.K132Nfs*3 0.21 TCGA-D5-6530-01 10 128851058 128851058 G A DOCK1 Missense_Mutation p.R751H 0.33 tolerated(0.09) benign(0.019) TCGA-D5-6530-01 10 131638543 131638545 AGG - EBF3 In_Frame_Del p.P530del 0.30 TCGA-D5-6530-01 10 13276216 13276216 C T UCMA Missense_Mutation p.V15M 0.31 tolerated(0.11) benign(0.049) TCGA-D5-6530-01 10 16635415 16635415 G A RSU1 Missense_Mutation p.P271L 0.32 tolerated_low_confidence(0.07) benign(0.086) TCGA-D5-6530-01 10 17152917 17152917 C T CUBN Splice_Site p.X339_splice 0.34 TCGA-D5-6530-01 10 17756599 17756601 TCC - STAM In_Frame_Del p.P484del 0.34 TCGA-D5-6530-01 10 25701392 25701392 G A GPR158 Missense_Mutation p.R442H 0.37 deleterious(0) probably_damaging(0.991) TCGA-D5-6530-01 10 27497335 27497335 C T ACBD5 Missense_Mutation p.R415Q 0.28 tolerated(0.35) benign(0.004) TCGA-D5-6530-01 10 27537988 27537988 G A RP11-85G18.6 Intron 0.08 TCGA-D5-6530-01 10 28284056 28284056 T C ARMC4 Missense_Mutation p.R6G 0.38 deleterious(0.01) benign(0.004) TCGA-D5-6530-01 10 29821018 29821018 C T SVIL Missense_Mutation p.R641H 0.31 deleterious(0.01) benign(0.082) TCGA-D5-6530-01 10 30629365 30629365 G A MTPAP Silent p.V115V 0.05 TCGA-D5-6530-01 10 3190334 3190334 G A PITRM1 Intron 0.36 TCGA-D5-6530-01 10 34601218 34601219 - A PARD3 Intron 0.31 TCGA-D5-6530-01 10 35500201 35500201 C T CREM Intron 0.36 TCGA-D5-6530-01 10 4872979 4872979 G A AKR1E2 Missense_Mutation p.R51H 0.31 tolerated(0.1) benign(0.013) TCGA-D5-6530-01 10 51579225 51579225 G A NCOA4 Silent p.E44E 0.38 TCGA-D5-6530-01 10 51769144 51769144 C T AGAP6 Missense_Mutation p.T420M 0.30 deleterious(0.04) benign(0.427) TCGA-D5-6530-01 10 55581902 55581902 T C PCDH15 Missense_Mutation p.M1864V 0.37 tolerated_low_confidence(0.12) unknown(0) TCGA-D5-6530-01 10 60027409 60027409 A - IPMK 5'UTR 0.39 TCGA-D5-6530-01 10 6104151 6104151 G A IL2RA 5'UTR 0.32 TCGA-D5-6530-01 10 69669034 69669034 T C SIRT1 Missense_Mutation p.C398R 0.31 deleterious(0) probably_damaging(0.948) TCGA-D5-6530-01 10 69669048 69669048 A G SIRT1 Silent p.E402E 0.04 TCGA-D5-6530-01 10 69908222 69908222 C T MYPN Nonsense_Mutation p.Q415* 0.36 TCGA-D5-6530-01 10 70426854 70426854 G A TET1 Missense_Mutation p.R1505H 0.36 deleterious(0) probably_damaging(0.923) TCGA-D5-6530-01 10 70962276 70962276 G C SUPV3L1 Splice_Site p.X533_splice 0.35 TCGA-D5-6530-01 10 71267371 71267371 C - TSPAN15 3'UTR 0.25 TCGA-D5-6530-01 10 71849852 71849852 A G H2AFY2 Missense_Mutation p.D70G 0.34 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 10 71851664 71851665 - G H2AFY2 Frame_Shift_Ins p.K147Efs*21 0.24 TCGA-D5-6530-01 10 72503424 72503424 G A ADAMTS14 Missense_Mutation p.R685H 0.36 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 10 72505048 72505048 C - ADAMTS14 Frame_Shift_Del p.H755Tfs*5 0.27 TCGA-D5-6530-01 10 73822535 73822535 C T SPOCK2 Missense_Mutation p.G420R 0.34 tolerated_low_confidence(0.16) unknown(0) TCGA-D5-6530-01 10 75135869 75135869 G A ANXA7 Missense_Mutation p.A484V 0.35 deleterious(0.02) probably_damaging(0.948) TCGA-D5-6530-01 10 7759731 7759731 C T ITIH2 Missense_Mutation p.R204W 0.33 deleterious(0) probably_damaging(0.934) TCGA-D5-6530-01 10 7763617 7763617 C T ITIH2 Silent p.H248H 0.37 TCGA-D5-6530-01 10 7791343 7791343 C A ITIH2 3'UTR 0.34 TCGA-D5-6530-01 10 81272543 81272543 G A EIF5AL1 Silent p.S46S 0.36 TCGA-D5-6530-01 10 81928878 81928878 G - ANXA11 Frame_Shift_Del p.G137Dfs*14 0.32 TCGA-D5-6530-01 10 82394234 82394234 G A SH2D4B Intron 0.29 TCGA-D5-6530-01 10 88681340 88681340 C T BMPR1A Silent p.P410P 0.32 TCGA-D5-6530-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.45 TCGA-D5-6530-01 10 89268240 89268241 - A MINPP1 Frame_Shift_Ins p.V265Sfs*11 0.32 TCGA-D5-6530-01 10 90585816 90585816 G A ANKRD22 Silent p.V126V 0.33 TCGA-D5-6530-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.33 TCGA-D5-6530-01 10 91099579 91099580 - A IFIT3 Frame_Shift_Ins p.S392Ifs*3 0.23 TCGA-D5-6530-01 10 91359120 91359120 T - PANK1 Frame_Shift_Del p.K400Sfs*23 0.27 TCGA-D5-6530-01 10 93572748 93572748 C T TNKS2 Missense_Mutation p.R70W 0.34 deleterious(0) probably_damaging(0.995) TCGA-D5-6530-01 10 94410264 94410264 C A KIF11 Missense_Mutation p.P1010Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 10 98155765 98155765 C - TLL2 Frame_Shift_Del p.G466Efs*3 0.27 TCGA-D5-6530-01 10 99639496 99639496 G A CRTAC1 Intron 0.38 TCGA-D5-6530-01 11 100179163 100179163 A G CNTN5 Missense_Mutation p.H898R 0.31 tolerated(0.23) possibly_damaging(0.499) TCGA-D5-6530-01 11 10050019 10050019 G A SBF2 Missense_Mutation p.A200V 0.34 tolerated(0.08) benign(0.378) TCGA-D5-6530-01 11 102826055 102826055 G A MMP13 Silent p.C96C 0.37 TCGA-D5-6530-01 11 10506511 10506511 G A AMPD3 Missense_Mutation p.S254N 0.34 tolerated(0.29) benign(0.001) TCGA-D5-6530-01 11 107325227 107325228 - T CWF19L2 Frame_Shift_Ins p.S97Efs*7 0.30 TCGA-D5-6530-01 11 1078354 1078354 C - MUC2 Frame_Shift_Del p.A216Hfs*14 0.24 TCGA-D5-6530-01 11 108200943 108200943 A G ATM Missense_Mutation p.Y2437C 0.34 deleterious(0) probably_damaging(0.976) TCGA-D5-6530-01 11 1098689 1098689 T C MUC2 Silent p.D2353D 0.35 TCGA-D5-6530-01 11 110450188 110450188 G A ARHGAP20 Missense_Mutation p.A1161V 0.34 tolerated_low_confidence(0.13) benign(0.034) TCGA-D5-6530-01 11 115102146 115102146 T G CADM1 Missense_Mutation p.E163D 0.37 tolerated(0.12) possibly_damaging(0.809) TCGA-D5-6530-01 11 1155593 1155593 G A MUC5AC Missense_Mutation p.G94D 0.35 deleterious(0) probably_damaging(0.981) TCGA-D5-6530-01 11 117303143 117303143 C T DSCAML1 Missense_Mutation p.V1762I 0.37 tolerated(0.44) possibly_damaging(0.784) TCGA-D5-6530-01 11 118769997 118769997 G A BCL9L Silent p.P1209P 0.35 TCGA-D5-6530-01 11 119025032 119025032 G A ABCG4 Missense_Mutation p.R140H 0.45 deleterious(0) possibly_damaging(0.781) TCGA-D5-6530-01 11 119056618 119056620 CTT - PDZD3 Intron 0.36 TCGA-D5-6530-01 11 119215690 119215690 G - MFRP Frame_Shift_Del p.T223Rfs*83 0.23 TCGA-D5-6530-01 11 119983134 119983134 G A TRIM29 Silent p.N585N 0.31 TCGA-D5-6530-01 11 121986451 121986451 A G BLID Silent p.P60P 0.32 TCGA-D5-6530-01 11 123893974 123893974 C A OR10G9 Silent p.S85S 0.22 TCGA-D5-6530-01 11 124740064 124740064 G A ROBO3 Missense_Mutation p.R257H 0.28 deleterious(0) probably_damaging(0.996) TCGA-D5-6530-01 11 125871702 125871702 G A CDON Silent p.P690P 0.39 TCGA-D5-6530-01 11 129748215 129748215 A T NFRKB Silent p.P525P 0.30 TCGA-D5-6530-01 11 129758663 129758663 G T NFRKB Missense_Mutation p.L68I 0.24 tolerated(0.32) unknown(0) TCGA-D5-6530-01 11 134048586 134048586 G - NCAPD3 Frame_Shift_Del p.Q909Rfs*10 0.25 TCGA-D5-6530-01 11 134182351 134182351 C T GLB1L3 Missense_Mutation p.R466C 0.26 tolerated(0.18) benign(0.142) TCGA-D5-6530-01 11 134253610 134253610 G A B3GAT1 Silent p.D195D 0.31 TCGA-D5-6530-01 11 14300898 14300898 A G RRAS2 Silent p.H200H 0.31 TCGA-D5-6530-01 11 25004716 25004716 G A LUZP2 Silent p.L214L 0.21 TCGA-D5-6530-01 11 314210 314210 C - IFITM1 Frame_Shift_Del p.S16Afs*9 0.28 TCGA-D5-6530-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.28 TCGA-D5-6530-01 11 32636467 32636468 - T CCDC73 Frame_Shift_Ins p.S466Kfs*5 0.17 TCGA-D5-6530-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.32 TCGA-D5-6530-01 11 34194712 34194712 G A ABTB2 Missense_Mutation p.R463W 0.33 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 11 34910341 34910341 T - APIP Frame_Shift_Del p.S95Afs*8 0.34 TCGA-D5-6530-01 11 43428700 43428700 C T TTC17 Missense_Mutation p.R592C 0.30 deleterious(0) probably_damaging(0.991) TCGA-D5-6530-01 11 44255769 44255769 C T EXT2 Silent p.N670N 0.39 TCGA-D5-6530-01 11 46321543 46321543 C A CREB3L1 Missense_Mutation p.L54M 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-D5-6530-01 11 47259462 47259462 T C DDB2 Silent p.P366P 0.36 TCGA-D5-6530-01 11 48157769 48157769 G A PTPRJ Silent p.P598P 0.28 TCGA-D5-6530-01 11 49204780 49204780 G A FOLH1 Missense_Mutation p.R281C 0.05 tolerated(0.07) benign(0.179) TCGA-D5-6530-01 11 55406142 55406142 T - OR4P4 Frame_Shift_Del p.F105Lfs*4 0.25 TCGA-D5-6530-01 11 558069 558069 G - C11orf35 Intron 0.29 TCGA-D5-6530-01 11 55860811 55860811 A G OR8I2 Missense_Mutation p.T10A 0.35 tolerated(0.17) benign(0.004) TCGA-D5-6530-01 11 563395 563395 G T RASSF7 Splice_Site p.X318_splice 0.29 TCGA-D5-6530-01 11 56344422 56344422 T C OR5M10 Missense_Mutation p.Y259C 0.35 deleterious(0) probably_damaging(0.98) TCGA-D5-6530-01 11 57089450 57089450 A - TNKS1BP1 5'UTR 0.24 TCGA-D5-6530-01 11 601591 601591 C G PHRF1 Missense_Mutation p.P348A 0.33 tolerated(0.75) benign(0.003) TCGA-D5-6530-01 11 61897470 61897470 G T INCENP Missense_Mutation p.E157D 0.38 tolerated(0.24) unknown(0) TCGA-D5-6530-01 11 62290850 62290850 A G AHNAK Missense_Mutation p.L3680S 0.38 probably_damaging(0.979) TCGA-D5-6530-01 11 62378921 62378921 C T EML3 Missense_Mutation p.G57D 0.36 tolerated(0.17) benign(0.002) TCGA-D5-6530-01 11 62561881 62561881 G A NXF1 Missense_Mutation p.R537W 0.33 deleterious(0.01) probably_damaging(0.921) TCGA-D5-6530-01 11 62563417 62563417 T C NXF1 Splice_Site p.X488_splice 0.35 TCGA-D5-6530-01 11 63669731 63669731 C T MARK2 Missense_Mutation p.A388V 0.31 tolerated(0.43) benign(0.02) TCGA-D5-6530-01 11 63978575 63978577 AGA - FERMT3 In_Frame_Del p.K153del 0.30 TCGA-D5-6530-01 11 64032517 64032517 C - PLCB3 Frame_Shift_Del p.R918Afs*95 0.33 TCGA-D5-6530-01 11 64374866 64374866 C T NRXN2 Silent p.A1647A 0.34 TCGA-D5-6530-01 11 64693222 64693222 C - PPP2R5B Frame_Shift_Del p.P7Lfs*71 0.38 TCGA-D5-6530-01 11 64756506 64756506 G A BATF2 3'UTR 0.32 TCGA-D5-6530-01 11 64756889 64756889 C T BATF2 Silent p.S179S 0.37 TCGA-D5-6530-01 11 65481128 65481128 T - KAT5 Frame_Shift_Del p.Q205Rfs*41 0.25 TCGA-D5-6530-01 11 65481291 65481291 G A KAT5 Missense_Mutation p.R221Q 0.32 tolerated(0.16) benign(0.373) TCGA-D5-6530-01 11 65836235 65836235 T - SF3B2 3'UTR 0.25 TCGA-D5-6530-01 11 66613028 66613028 G A RCE1 Missense_Mutation p.R250H 0.35 deleterious(0) possibly_damaging(0.84) TCGA-D5-6530-01 11 6662540 6662540 C T DCHS1 Missense_Mutation p.R102H 0.35 deleterious(0.03) benign(0.381) TCGA-D5-6530-01 11 66638791 66638791 G A PC Missense_Mutation p.A161V 0.34 tolerated(0.21) benign(0.371) TCGA-D5-6530-01 11 67261021 67261021 G A PITPNM1 Missense_Mutation p.R1068W 0.44 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 11 6789795 6789796 - T OR2AG2 Frame_Shift_Ins p.Y132Ifs*49 0.25 TCGA-D5-6530-01 11 68131325 68131325 G A LRP5 Missense_Mutation p.R266H 0.37 tolerated(0.45) benign(0.002) TCGA-D5-6530-01 11 69934097 69934097 G A ANO1 Silent p.P116P 0.33 TCGA-D5-6530-01 11 71250074 71250074 G A KRTAP5-8 3'UTR 0.38 TCGA-D5-6530-01 11 72301239 72301239 T A PDE2A Missense_Mutation p.Q251H 0.05 tolerated(0.39) benign(0.001) TCGA-D5-6530-01 11 72422129 72422129 C T ARAP1 Missense_Mutation p.G384R 0.39 deleterious(0.01) probably_damaging(0.943) TCGA-D5-6530-01 11 73022366 73022366 C - ARHGEF17 Frame_Shift_Del p.P896Lfs*22 0.28 TCGA-D5-6530-01 11 75160035 75160035 C T GDPD5 Missense_Mutation p.R234H 0.32 deleterious(0) probably_damaging(0.973) TCGA-D5-6530-01 11 75439176 75439176 G A MOGAT2 Missense_Mutation p.A213T 0.35 deleterious(0) probably_damaging(0.991) TCGA-D5-6530-01 11 7686704 7686704 C T CYB5R2 Silent p.T244T 0.30 TCGA-D5-6530-01 11 76916593 76916593 G A MYO7A Missense_Mutation p.R1856H 0.36 deleterious(0.03) benign(0.004) TCGA-D5-6530-01 11 77775125 77775125 C A THRSP Silent p.I66I 0.38 TCGA-D5-6530-01 11 77909046 77909046 T C USP35 Silent p.D246D 0.32 TCGA-D5-6530-01 11 77911710 77911710 C - USP35 Frame_Shift_Del p.M354Wfs*119 0.40 TCGA-D5-6530-01 11 84028181 84028181 G A DLG2 Intron 0.34 TCGA-D5-6530-01 11 8959452 8959452 C T ASCL3 Missense_Mutation p.C86Y 0.28 tolerated(0.23) benign(0.068) TCGA-D5-6530-01 11 94280038 94280038 T - FUT4 3'UTR 0.21 TCGA-D5-6530-01 11 993891 993891 G A AP2A2 Missense_Mutation p.R563H 0.43 deleterious(0.05) benign(0.019) TCGA-D5-6530-01 11 9985388 9985388 G A SBF2 Nonsense_Mutation p.Q548* 0.32 TCGA-D5-6530-01 12 10205314 10205314 C T CLEC9A Missense_Mutation p.L10F 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6530-01 12 107075846 107075846 G A RFX4 Intron 0.43 TCGA-D5-6530-01 12 108169006 108169006 G A ASCL4 Missense_Mutation p.R5H 0.36 tolerated_low_confidence(0.18) benign(0.158) TCGA-D5-6530-01 12 109181654 109181654 T C SSH1 3'UTR 0.34 TCGA-D5-6530-01 12 109494506 109494507 - G USP30 Frame_Shift_Ins p.V37Sfs*27 0.26 TCGA-D5-6530-01 12 109834322 109834322 T C MYO1H Missense_Mutation p.C126R 0.45 deleterious(0) benign(0.056) TCGA-D5-6530-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.34 TCGA-D5-6530-01 12 112623046 112623046 C - HECTD4 Frame_Shift_Del p.A3096Rfs*26 0.23 TCGA-D5-6530-01 12 112721067 112721067 G A HECTD4 Missense_Mutation p.R315C 0.33 probably_damaging(0.983) TCGA-D5-6530-01 12 117703196 117703196 G - NOS1 Frame_Shift_Del p.M688Cfs*52 0.32 TCGA-D5-6530-01 12 117977605 117977605 G - KSR2 Frame_Shift_Del p.L536Sfs*61 0.31 TCGA-D5-6530-01 12 120031799 120031799 C T TMEM233 Missense_Mutation p.A49V 0.33 tolerated(0.85) possibly_damaging(0.672) TCGA-D5-6530-01 12 120173130 120173130 C T CIT Silent p.Q997Q 0.05 TCGA-D5-6530-01 12 120582225 120582225 G A GCN1L1 Missense_Mutation p.R1794C 0.35 probably_damaging(0.999) TCGA-D5-6530-01 12 120593156 120593156 C T GCN1L1 Silent p.A1173A 0.41 TCGA-D5-6530-01 12 120597804 120597804 C T GCN1L1 Silent p.A858A 0.47 TCGA-D5-6530-01 12 122261404 122261404 G T SETD1B Missense_Mutation p.G1597V 0.32 unknown(0) TCGA-D5-6530-01 12 123089546 123089546 C T KNTC1 Silent p.I1766I 0.33 TCGA-D5-6530-01 12 123340131 123340131 C - HIP1R Frame_Shift_Del p.N345Mfs*4 0.30 TCGA-D5-6530-01 12 124144856 124144856 A - GTF2H3 3'UTR 0.22 TCGA-D5-6530-01 12 124333312 124333312 C T DNAH10 Silent p.C1877C 0.37 TCGA-D5-6530-01 12 124421800 124421800 G - CCDC92 Frame_Shift_Del p.I268Sfs*40 0.33 TCGA-D5-6530-01 12 124427992 124427992 T C CCDC92 Missense_Mutation p.H28R 0.35 deleterious(0.03) benign(0.156) TCGA-D5-6530-01 12 124499583 124499583 C T ZNF664 3'UTR 0.29 TCGA-D5-6530-01 12 124862856 124862856 G A NCOR2 Silent p.P698P 0.37 TCGA-D5-6530-01 12 125626686 125626686 G A AACS Missense_Mutation p.A644T 0.32 tolerated(0.36) benign(0.222) TCGA-D5-6530-01 12 129028545 129028545 C T TMEM132C Missense_Mutation p.R340C 0.38 deleterious(0) benign(0.003) TCGA-D5-6530-01 12 12980284 12980284 C T DDX47 Missense_Mutation p.A404V 0.33 tolerated(0.27) benign(0.002) TCGA-D5-6530-01 12 13716334 13716334 T C GRIN2B Missense_Mutation p.K1280E 0.25 tolerated(0.27) benign(0.237) TCGA-D5-6530-01 12 2062350 2062351 - TGG DCP1B In_Frame_Ins p.H251dup 0.31 TCGA-D5-6530-01 12 26232111 26232111 G T RASSF8 3'UTR 0.38 TCGA-D5-6530-01 12 27066904 27066904 T A ASUN Intron 0.38 TCGA-D5-6530-01 12 41957390 41957390 C T PDZRN4 Missense_Mutation p.A469V 0.36 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 12 4398042 4398042 C T CCND2 Silent p.I202I 0.34 TCGA-D5-6530-01 12 45307647 45307647 T - NELL2 5'UTR 0.25 TCGA-D5-6530-01 12 46244454 46244454 C - ARID2 Frame_Shift_Del p.P851Hfs*4 0.27 TCGA-D5-6530-01 12 49412460 49412461 - G PRKAG1 Intron 0.31 TCGA-D5-6530-01 12 49723722 49723724 CTT - TROAP In_Frame_Del p.S417del 0.34 TCGA-D5-6530-01 12 49959365 49959365 C - MCRS1 Frame_Shift_Del p.V92Wfs*41 0.29 TCGA-D5-6530-01 12 5020705 5020705 C T KCNA1 Missense_Mutation p.T54I 0.38 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 12 52779158 52779158 C T KRT84 Missense_Mutation p.R71Q 0.28 tolerated(0.09) benign(0.002) TCGA-D5-6530-01 12 52841573 52841573 G A KRT6B Silent p.G471G 0.37 TCGA-D5-6530-01 12 52910967 52910967 T C KRT5 Missense_Mutation p.N381S 0.32 tolerated(0.22) benign(0.31) TCGA-D5-6530-01 12 52981590 52981590 C - KRT72 Frame_Shift_Del p.D379Tfs*4 0.31 TCGA-D5-6530-01 12 53216927 53216927 C T KRT79 Missense_Mutation p.A414T 0.33 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 12 53343196 53343198 AGA - KRT18 In_Frame_Del p.K81del 0.27 TCGA-D5-6530-01 12 53585695 53585695 C T ITGB7 Missense_Mutation p.R755H 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-D5-6530-01 12 53647283 53647284 - G MFSD5 Frame_Shift_Ins p.E331Gfs*4 0.43 TCGA-D5-6530-01 12 53687294 53687294 A G ESPL1 3'UTR 0.33 TCGA-D5-6530-01 12 53875758 53875758 C T MAP3K12 Silent p.L849L 0.35 TCGA-D5-6530-01 12 53918430 53918430 C T ATF7 Missense_Mutation p.R348H 0.41 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 12 54333152 54333152 G A HOXC13 Silent p.P154P 0.39 TCGA-D5-6530-01 12 55714852 55714852 G T OR6C1 Missense_Mutation p.A157S 0.27 deleterious_low_confidence(0.03) benign(0.021) TCGA-D5-6530-01 12 56398335 56398335 C T SUOX Missense_Mutation p.P388S 0.40 tolerated(0.59) benign(0.003) TCGA-D5-6530-01 12 57560723 57560723 C - LRP1 Frame_Shift_Del p.N939Tfs*41 0.26 TCGA-D5-6530-01 12 57573209 57573209 C T LRP1 Silent p.P1612P 0.32 TCGA-D5-6530-01 12 57589131 57589131 G A LRP1 Missense_Mutation p.G2796S 0.43 probably_damaging(0.97) TCGA-D5-6530-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.25 TCGA-D5-6530-01 12 57908578 57908578 G A MARS Silent p.L681L 0.33 TCGA-D5-6530-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.30 TCGA-D5-6530-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.29 TCGA-D5-6530-01 12 6173537 6173537 C T VWF Missense_Mutation p.R436H 0.40 deleterious(0.02) possibly_damaging(0.462) TCGA-D5-6530-01 12 6184595 6184595 C - VWF Frame_Shift_Del p.L261Wfs*196 0.35 TCGA-D5-6530-01 12 62785633 62785634 - A USP15 Frame_Shift_Ins p.R760Kfs*4 0.32 TCGA-D5-6530-01 12 6495313 6495313 G A LTBR Missense_Mutation p.C185Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 12 6500019 6500019 G T LTBR Missense_Mutation p.K408N 0.30 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 12 67706721 67706721 T - CAND1 3'UTR 0.43 TCGA-D5-6530-01 12 7060852 7060852 G A PTPN6 Missense_Mutation p.R30Q 0.39 deleterious(0) benign(0.43) TCGA-D5-6530-01 12 76442093 76442093 A - NAP1L1 3'UTR 0.34 TCGA-D5-6530-01 12 76765350 76765350 A - OSBPL8 Frame_Shift_Del p.F644Lfs*25 0.23 TCGA-D5-6530-01 12 76796481 76796481 T - OSBPL8 Frame_Shift_Del p.E119Nfs*37 0.24 TCGA-D5-6530-01 12 7864086 7864086 G T DPPA3 5'UTR 0.36 TCGA-D5-6530-01 12 80943318 80943318 A - PTPRQ Frame_Shift_Del p.K1361Rfs*5 0.29 TCGA-D5-6530-01 12 85255704 85255704 G T SLC6A15 Missense_Mutation p.P634T 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 12 86373957 86373957 C G MGAT4C Missense_Mutation p.D183H 0.35 deleterious(0.01) benign(0.013) TCGA-D5-6530-01 12 9085474 9085474 A G PHC1 Missense_Mutation p.Q474R 0.18 deleterious(0) unknown(0) TCGA-D5-6530-01 12 94641750 94641750 G A PLXNC1 Silent p.T820T 0.38 TCGA-D5-6530-01 12 94763661 94763663 AGC - CCDC41 Intron 0.34 TCGA-D5-6530-01 12 96409388 96409388 C A LTA4H Silent p.L344L 0.33 TCGA-D5-6530-01 12 97158950 97158950 A T C12orf55 Missense_Mutation p.E2745D 0.32 deleterious(0.04) benign(0.094) TCGA-D5-6530-01 13 101184331 101184331 C T GGACT 3'UTR 0.34 TCGA-D5-6530-01 13 101910859 101910859 C T NALCN Missense_Mutation p.A401T 0.30 tolerated(1) benign(0.023) TCGA-D5-6530-01 13 113719271 113719271 A G MCF2L Missense_Mutation p.M210V 0.33 tolerated(0.06) benign(0.149) TCGA-D5-6530-01 13 23911493 23911493 A G SACS Silent p.N2174N 0.33 TCGA-D5-6530-01 13 23932594 23932594 C T SACS Missense_Mutation p.A162T 0.32 probably_damaging(0.996) TCGA-D5-6530-01 13 24520058 24520058 G T ANKRD20A19P RNA 0.29 TCGA-D5-6530-01 13 25887130 25887130 C T NUPL1 Silent p.S132S 0.31 TCGA-D5-6530-01 13 25894697 25894697 T C NUPL1 Missense_Mutation p.L247P 0.36 deleterious(0) probably_damaging(0.983) TCGA-D5-6530-01 13 26153966 26153966 G A ATP8A2 Missense_Mutation p.A630T 0.06 deleterious(0) probably_damaging(0.923) TCGA-D5-6530-01 13 26788241 26788241 A - RNF6 Frame_Shift_Del p.L593Yfs*2 0.38 TCGA-D5-6530-01 13 27246125 27246125 A G WASF3 Missense_Mutation p.K180R 0.40 tolerated(0.5) benign(0.019) TCGA-D5-6530-01 13 28519580 28519580 G A ATP5EP2 3'UTR 0.07 TCGA-D5-6530-01 13 28519601 28519601 A G ATP5EP2 3'UTR 0.11 TCGA-D5-6530-01 13 30782586 30782586 A - KATNAL1 3'UTR 0.36 TCGA-D5-6530-01 13 32785123 32785123 C T FRY Missense_Mutation p.P1515S 0.29 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 13 32913837 32913837 A - BRCA2 Frame_Shift_Del p.N1784Tfs*7 0.28 TCGA-D5-6530-01 13 33273995 33273995 G A PDS5B Missense_Mutation p.E577K 0.35 tolerated(0.11) benign(0.233) TCGA-D5-6530-01 13 35733662 35733663 - A NBEA Frame_Shift_Ins p.N1121Kfs*2 0.33 TCGA-D5-6530-01 13 37576413 37576413 C T EXOSC8 Silent p.T7T 0.18 TCGA-D5-6530-01 13 41331010 41331010 T - MRPS31 Frame_Shift_Del p.R247Gfs*15 0.31 TCGA-D5-6530-01 13 58206797 58206797 C T PCDH17 Silent p.G39G 0.39 TCGA-D5-6530-01 13 70371051 70371051 C T KLHL1 Nonsense_Mutation p.W486* 0.34 TCGA-D5-6530-01 13 77780956 77780956 G A MYCBP2 Nonsense_Mutation p.R1103* 0.34 TCGA-D5-6530-01 13 88331500 88331500 G T SLITRK5 3'UTR 0.37 TCGA-D5-6530-01 13 92345502 92345502 C A GPC5 Silent p.T129T 0.35 TCGA-D5-6530-01 13 95673748 95673748 A - ABCC4 3'UTR 0.42 TCGA-D5-6530-01 13 96086025 96086025 G A CLDN10 5'UTR 0.29 TCGA-D5-6530-01 13 98828976 98828976 G A RNF113B Missense_Mutation p.A172V 0.35 tolerated(1) benign(0.001) TCGA-D5-6530-01 14 101200555 101200555 C - DLK1 Frame_Shift_Del p.P160Lfs*50 0.40 TCGA-D5-6530-01 14 103390302 103390302 G A AMN Missense_Mutation p.A65T 0.21 tolerated(0.21) benign(0.008) TCGA-D5-6530-01 14 103442278 103442278 G A CDC42BPB Silent p.Y443Y 0.07 TCGA-D5-6530-01 14 103932044 103932044 G A MARK3 Missense_Mutation p.G231R 0.36 deleterious(0.01) probably_damaging(1) TCGA-D5-6530-01 14 103986553 103986553 C T CKB Silent p.L291L 0.40 TCGA-D5-6530-01 14 104640511 104640511 G A KIF26A Missense_Mutation p.R686H 0.34 deleterious(0) possibly_damaging(0.643) TCGA-D5-6530-01 14 105846126 105846126 G A PACS2 Missense_Mutation p.S337N 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6530-01 14 21500212 21500212 C T TPPP2 Silent p.G163G 0.27 TCGA-D5-6530-01 14 21550263 21550263 G A ARHGEF40 Missense_Mutation p.R1079H 0.29 deleterious(0.03) benign(0.39) TCGA-D5-6530-01 14 21793439 21793439 G A RPGRIP1 Missense_Mutation p.R755H 0.39 tolerated(0.13) benign(0.04) TCGA-D5-6530-01 14 24619975 24619975 C - RNF31 Frame_Shift_Del p.K458Sfs*34 0.22 TCGA-D5-6530-01 14 24899924 24899924 G - KHNYN 5'UTR 0.31 TCGA-D5-6530-01 14 31112595 31112596 - T SCFD1 Frame_Shift_Ins p.V202Cfs*43 0.28 TCGA-D5-6530-01 14 32560588 32560588 G A ARHGAP5 Missense_Mutation p.C238Y 0.35 deleterious(0) probably_damaging(0.979) TCGA-D5-6530-01 14 34270174 34270174 C T NPAS3 Silent p.G887G 0.40 TCGA-D5-6530-01 14 35280182 35280182 T - BAZ1A Frame_Shift_Del p.E200Nfs*25 0.29 TCGA-D5-6530-01 14 45432517 45432517 G A FAM179B Missense_Mutation p.R298H 0.32 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-D5-6530-01 14 45512930 45512930 C A FAM179B Missense_Mutation p.A1285D 0.32 deleterious(0) possibly_damaging(0.787) TCGA-D5-6530-01 14 50809703 50809704 - C CDKL1 Intron 0.22 TCGA-D5-6530-01 14 51206035 51206035 G A NIN Silent p.S1873S 0.36 TCGA-D5-6530-01 14 53101680 53101680 C A GPR137C Silent p.G379G 0.18 TCGA-D5-6530-01 14 54418736 54418736 G A BMP4 Missense_Mutation p.R69C 0.34 deleterious(0) probably_damaging(0.932) TCGA-D5-6530-01 14 55332094 55332094 A G GCH1 Missense_Mutation p.I135T 0.35 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 14 55607036 55607036 G A LGALS3 Missense_Mutation p.R129H 0.06 deleterious(0.01) benign(0.106) TCGA-D5-6530-01 14 58714479 58714479 A C PSMA3 Silent p.S11S 0.33 TCGA-D5-6530-01 14 65259826 65259826 G A SPTB Missense_Mutation p.T852M 0.35 deleterious(0.01) benign(0.149) TCGA-D5-6530-01 14 66082944 66082944 A G FUT8 Missense_Mutation p.H112R 0.33 deleterious(0.02) benign(0.094) TCGA-D5-6530-01 14 69346819 69346819 G A ACTN1 Missense_Mutation p.R714C 0.34 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 14 70478206 70478206 G A SMOC1 Missense_Mutation p.V288M 0.34 deleterious(0.04) possibly_damaging(0.642) TCGA-D5-6530-01 14 74180117 74180117 C T PNMA1 Missense_Mutation p.A76T 0.42 tolerated(0.48) benign(0.003) TCGA-D5-6530-01 14 74205912 74205913 - G ELMSAN1 Frame_Shift_Ins p.Q267Pfs*6 0.29 TCGA-D5-6530-01 14 74376074 74376074 G T ZNF410 Missense_Mutation p.G332V 0.35 deleterious(0.03) possibly_damaging(0.854) TCGA-D5-6530-01 14 74404717 74404717 C T FAM161B Missense_Mutation p.R563H 0.26 deleterious(0) possibly_damaging(0.527) TCGA-D5-6530-01 14 75359582 75359582 C - DLST Frame_Shift_Del p.P164Qfs*39 0.26 TCGA-D5-6530-01 14 75567754 75567754 C T NEK9 Missense_Mutation p.G648D 0.29 tolerated(0.34) benign(0.438) TCGA-D5-6530-01 14 76429639 76429639 C T TGFB3 Intron 0.33 TCGA-D5-6530-01 14 77791222 77791222 T C GSTZ1 Missense_Mutation p.Y9H 0.33 tolerated(0.1) benign(0.442) TCGA-D5-6530-01 14 90736539 90736539 C T PSMC1 Intron 0.37 TCGA-D5-6530-01 14 91662807 91662807 G A C14orf159 Silent p.P428P 0.39 TCGA-D5-6530-01 14 91744440 91744440 G A CCDC88C Silent p.L1628L 0.33 TCGA-D5-6530-01 14 94391664 94391664 C - FAM181A Frame_Shift_Del p.T18Qfs*45 0.20 TCGA-D5-6530-01 15 100636629 100636629 C G ADAMTS17 Missense_Mutation p.G690A 0.31 deleterious(0.04) possibly_damaging(0.896) TCGA-D5-6530-01 15 101593485 101593485 G A LRRK1 Missense_Mutation p.R1305Q 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 15 20644026 20644026 C - HERC2P3 RNA 0.21 TCGA-D5-6530-01 15 23811161 23811161 T G MKRN3 Missense_Mutation p.S78A 0.38 tolerated(0.65) benign(0.001) TCGA-D5-6530-01 15 27193429 27193429 T C GABRA5 3'UTR 0.23 TCGA-D5-6530-01 15 30663361 30663361 C T CHRFAM7A Missense_Mutation p.V184I 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 15 31042722 31042722 G A ARHGAP11B RNA 0.34 TCGA-D5-6530-01 15 31217385 31217385 G A FAN1 Missense_Mutation p.R743H 0.33 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 15 31218068 31218068 C A FAN1 Missense_Mutation p.A805D 0.33 tolerated(0.4) benign(0.02) TCGA-D5-6530-01 15 31324995 31324995 C T TRPM1 Missense_Mutation p.R967Q 0.41 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 15 31664382 31664382 C T KLF13 Silent p.H249H 0.42 TCGA-D5-6530-01 15 34023701 34023701 G A RYR3 Silent p.A2410A 0.38 TCGA-D5-6530-01 15 34113572 34113572 T C RYR3 Splice_Site p.X3639_splice 0.36 TCGA-D5-6530-01 15 38776836 38776836 A T FAM98B Silent p.G426G 0.35 TCGA-D5-6530-01 15 40661341 40661341 C A DISP2 Missense_Mutation p.L1010I 0.35 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 15 41037244 41037244 G A RMDN3 Silent p.D246D 0.36 TCGA-D5-6530-01 15 41870141 41870141 T C TYRO3 Silent p.T780T 0.19 TCGA-D5-6530-01 15 42442640 42442640 G A PLA2G4F Silent p.G272G 0.38 TCGA-D5-6530-01 15 43527058 43527058 C T TGM5 Missense_Mutation p.R595H 0.37 tolerated(0.09) probably_damaging(0.976) TCGA-D5-6530-01 15 45981279 45981279 C T SQRDL Missense_Mutation p.R387C 0.38 deleterious(0) possibly_damaging(0.459) TCGA-D5-6530-01 15 49907434 49907434 G A FAM227B 5'UTR 0.31 TCGA-D5-6530-01 15 50515214 50515214 G A SLC27A2 Missense_Mutation p.R342Q 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6530-01 15 52643677 52643677 C T MYO5A Missense_Mutation p.R1208H 0.39 deleterious(0.03) probably_damaging(0.973) TCGA-D5-6530-01 15 53081019 53081019 G A ONECUT1 Nonsense_Mutation p.Q355* 0.32 TCGA-D5-6530-01 15 55527010 55527010 T C RAB27A Silent p.T41T 0.39 TCGA-D5-6530-01 15 56387035 56387035 G A RFX7 Missense_Mutation p.P964L 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-D5-6530-01 15 58006972 58006972 A G POLR2M 3'UTR 0.13 TCGA-D5-6530-01 15 58007033 58007033 G A POLR2M 3'UTR 0.14 TCGA-D5-6530-01 15 63029095 63029095 C T TLN2 Missense_Mutation p.T1126M 0.32 tolerated(0.06) benign(0.097) TCGA-D5-6530-01 15 63880513 63880513 G A USP3 Missense_Mutation p.R369H 0.32 tolerated(0.11) benign(0.027) TCGA-D5-6530-01 15 63955286 63955286 T C HERC1 Missense_Mutation p.D2933G 0.30 possibly_damaging(0.505) TCGA-D5-6530-01 15 63978581 63978581 T C HERC1 Missense_Mutation p.T2068A 0.41 benign(0.188) TCGA-D5-6530-01 15 64966875 64966875 G T ZNF609 Missense_Mutation p.G608C 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-D5-6530-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.10 TCGA-D5-6530-01 15 68582324 68582324 C T FEM1B Missense_Mutation p.R210C 0.07 deleterious(0) benign(0.417) TCGA-D5-6530-01 15 68582681 68582681 C A FEM1B Missense_Mutation p.L329I 0.34 deleterious(0) probably_damaging(0.991) TCGA-D5-6530-01 15 70960980 70960980 G A UACA Silent p.H681H 0.35 TCGA-D5-6530-01 15 71302194 71302194 G A LRRC49 Missense_Mutation p.A491T 0.35 tolerated(0.06) benign(0.394) TCGA-D5-6530-01 15 71433845 71433845 T - THSD4 5'UTR 0.37 TCGA-D5-6530-01 15 75641361 75641361 C T NEIL1 Missense_Mutation p.P39S 0.41 tolerated(0.08) possibly_damaging(0.754) TCGA-D5-6530-01 15 75702183 75702183 T C SIN3A Silent p.P437P 0.34 TCGA-D5-6530-01 15 76248313 76248313 A C NRG4 Missense_Mutation p.D97E 0.33 tolerated(0.22) benign(0.027) TCGA-D5-6530-01 15 77227947 77227947 A - RCN2 Frame_Shift_Del p.N112Tfs*6 0.26 TCGA-D5-6530-01 15 78882973 78882973 C T CHRNA5 Missense_Mutation p.R414C 0.35 deleterious(0.02) possibly_damaging(0.901) TCGA-D5-6530-01 15 79058781 79058781 G A ADAMTS7 Missense_Mutation p.P1158S 0.35 tolerated(0.56) benign(0.003) TCGA-D5-6530-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.33 TCGA-D5-6530-01 15 80467390 80467390 C T FAH Silent p.D290D 0.35 TCGA-D5-6530-01 15 85164386 85164386 C T ZSCAN2 Silent p.N320N 0.40 TCGA-D5-6530-01 15 89388834 89388834 C G ACAN Missense_Mutation p.L384V 0.06 deleterious(0.01) unknown(0) TCGA-D5-6530-01 15 89391227 89391227 A G ACAN Missense_Mutation p.T564A 0.36 deleterious(0) unknown(0) TCGA-D5-6530-01 15 89449969 89449969 G A MFGE8 Missense_Mutation p.T143M 0.29 deleterious(0.01) probably_damaging(0.969) TCGA-D5-6530-01 15 89803983 89803983 G A FANCI Missense_Mutation p.R66H 0.42 tolerated(0.58) benign(0.003) TCGA-D5-6530-01 15 90129129 90129129 T A TICRR Missense_Mutation p.I456K 0.32 deleterious(0) benign(0.124) TCGA-D5-6530-01 15 91455353 91455353 G A MAN2A2 Silent p.L730L 0.04 TCGA-D5-6530-01 16 111451 111451 G A RHBDF1 Missense_Mutation p.R443W 0.33 deleterious(0.03) possibly_damaging(0.893) TCGA-D5-6530-01 16 11369998 11369998 C T PRM2 Missense_Mutation p.R77H 0.37 deleterious_low_confidence(0) unknown(0) TCGA-D5-6530-01 16 135404 135404 C T MPG Silent p.D175D 0.37 TCGA-D5-6530-01 16 15703532 15703532 C T KIAA0430 Missense_Mutation p.V1268I 0.32 tolerated(0.24) probably_damaging(0.997) TCGA-D5-6530-01 16 15832542 15832542 G A MYH11 Nonsense_Mutation p.R1008* 0.20 TCGA-D5-6530-01 16 18542417 18542417 G A NOMO2 Silent p.S537S 0.39 TCGA-D5-6530-01 16 18860681 18860681 G T SMG1 Missense_Mutation p.F1827L 0.37 deleterious(0.01) benign(0.048) TCGA-D5-6530-01 16 1918176 1918176 T - MEIOB Frame_Shift_Del p.M1? 0.20 TCGA-D5-6530-01 16 19725891 19725891 T - KNOP1 Frame_Shift_Del p.K156Rfs*57 0.23 TCGA-D5-6530-01 16 21008629 21008630 - G DNAH3 Frame_Shift_Ins p.G2193Rfs*6 0.25 TCGA-D5-6530-01 16 21145630 21145630 C T DNAH3 Silent p.L344L 0.35 TCGA-D5-6530-01 16 2159789 2159789 G A PKD1 Silent p.T1793T 0.34 TCGA-D5-6530-01 16 22144329 22144329 C T VWA3A Missense_Mutation p.R661C 0.36 tolerated(0.07) benign(0.013) TCGA-D5-6530-01 16 22358647 22358647 G A CDR2 Missense_Mutation p.A335V 0.34 deleterious(0) probably_damaging(0.913) TCGA-D5-6530-01 16 23691405 23691406 TC - PLK1 Frame_Shift_Del p.L138Pfs*12 0.24 TCGA-D5-6530-01 16 24567200 24567200 A G RBBP6 Missense_Mutation p.K166E 0.36 deleterious_low_confidence(0.04) probably_damaging(0.975) TCGA-D5-6530-01 16 24902317 24902317 G A SLC5A11 Silent p.P264P 0.34 TCGA-D5-6530-01 16 24963670 24963670 C T ARHGAP17 Missense_Mutation p.R329Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-D5-6530-01 16 2546748 2546748 C T RP11-20I23.1 Missense_Mutation p.A200V 0.31 deleterious(0.03) possibly_damaging(0.535) TCGA-D5-6530-01 16 27221460 27221460 C A KDM8 Missense_Mutation p.H44N 0.38 tolerated_low_confidence(0.26) benign(0.001) TCGA-D5-6530-01 16 2818182 2818182 G C SRRM2 Silent p.S2551S 0.36 TCGA-D5-6530-01 16 2821014 2821014 T - SRRM2 3'UTR 0.38 TCGA-D5-6530-01 16 28842344 28842344 G A ATXN2L Silent p.S424S 0.33 TCGA-D5-6530-01 16 29990761 29990761 C T TAOK2 Missense_Mutation p.A196V 0.37 deleterious(0) possibly_damaging(0.893) TCGA-D5-6530-01 16 30016554 30016554 C - INO80E Frame_Shift_Del p.D178Tfs*8 0.30 TCGA-D5-6530-01 16 30198457 30198457 C G CORO1A Missense_Mutation p.D183E 0.37 tolerated(0.05) benign(0.001) TCGA-D5-6530-01 16 30518138 30518138 C - ITGAL Frame_Shift_Del p.P825Rfs*11 0.28 TCGA-D5-6530-01 16 3064504 3064504 T C CLDN9 3'UTR 0.30 TCGA-D5-6530-01 16 31095998 31095998 C T PRSS53 Missense_Mutation p.V436M 0.30 deleterious(0.05) probably_damaging(0.988) TCGA-D5-6530-01 16 31123475 31123475 C T BCKDK Silent p.Y376Y 0.05 TCGA-D5-6530-01 16 31202855 31202856 - T FUS 3'UTR 0.26 TCGA-D5-6530-01 16 31393265 31393265 T - ITGAX 3'UTR 0.29 TCGA-D5-6530-01 16 3454471 3454471 G A ZNF174 Missense_Mutation p.G150R 0.36 deleterious(0) probably_damaging(0.945) TCGA-D5-6530-01 16 3586108 3586108 T - CLUAP1 Intron 0.28 TCGA-D5-6530-01 16 3706179 3706179 G A DNASE1 Missense_Mutation p.V105M 0.38 deleterious(0) possibly_damaging(0.804) TCGA-D5-6530-01 16 4796964 4796964 G A C16orf71 Silent p.E406E 0.36 TCGA-D5-6530-01 16 48587555 48587555 A C N4BP1 Missense_Mutation p.C639G 0.26 deleterious(0.02) possibly_damaging(0.477) TCGA-D5-6530-01 16 4902927 4902928 - C UBN1 Frame_Shift_Ins p.H5Pfs*35 0.28 TCGA-D5-6530-01 16 4944500 4944500 G - PPL Frame_Shift_Del p.T455Qfs*37 0.30 TCGA-D5-6530-01 16 5040887 5040887 C T SEC14L5 Silent p.N155N 0.36 TCGA-D5-6530-01 16 5078165 5078165 A T NAGPA Nonsense_Mutation p.C314* 0.34 TCGA-D5-6530-01 16 50815239 50815239 T C CYLD Missense_Mutation p.V534A 0.40 deleterious(0) probably_damaging(0.992) TCGA-D5-6530-01 16 56996937 56996937 C T CETP Missense_Mutation p.A45V 0.41 deleterious(0.01) benign(0.023) TCGA-D5-6530-01 16 57246977 57246977 G A RSPRY1 Missense_Mutation p.A204T 0.31 tolerated(0.1) benign(0.003) TCGA-D5-6530-01 16 57803565 57803565 C T KIFC3 Missense_Mutation p.R387Q 0.33 tolerated(0.08) benign(0.149) TCGA-D5-6530-01 16 66431888 66431888 C T CDH5 Missense_Mutation p.T455I 0.28 tolerated(0.4) benign(0.008) TCGA-D5-6530-01 16 66622105 66622105 A G CMTM2 3'UTR 0.37 TCGA-D5-6530-01 16 66946459 66946459 T G CDH16 Missense_Mutation p.E436A 0.32 tolerated(0.63) benign(0.004) TCGA-D5-6530-01 16 67237709 67237709 C T ELMO3 Missense_Mutation p.R751W 0.34 deleterious(0.02) possibly_damaging(0.663) TCGA-D5-6530-01 16 67293753 67293753 T C SLC9A5 Silent p.D582D 0.30 TCGA-D5-6530-01 16 67914066 67914066 C T EDC4 Missense_Mutation p.P682S 0.29 tolerated(0.11) benign(0) TCGA-D5-6530-01 16 68293631 68293631 C T PLA2G15 3'UTR 0.37 TCGA-D5-6530-01 16 697855 697855 T C FAM195A Missense_Mutation p.V128A 0.33 tolerated(0.81) benign(0.019) TCGA-D5-6530-01 16 70211336 70211336 G A CLEC18C Missense_Mutation p.A137T 0.17 tolerated(0.5) benign(0.037) TCGA-D5-6530-01 16 70796472 70796472 G T VAC14 Missense_Mutation p.L448M 0.28 tolerated(0.21) possibly_damaging(0.786) TCGA-D5-6530-01 16 70986408 70986408 G A HYDIN Silent p.S2149S 0.30 TCGA-D5-6530-01 16 71319743 71319743 A - CMTR2 Frame_Shift_Del p.F27Lfs*40 0.28 TCGA-D5-6530-01 16 71887512 71887512 T A ATXN1L 3'UTR 0.35 TCGA-D5-6530-01 16 71895707 71895707 G A ZNF821 Missense_Mutation p.R186W 0.36 deleterious(0.01) possibly_damaging(0.794) TCGA-D5-6530-01 16 72094680 72094680 C T HP Missense_Mutation p.A371V 0.33 deleterious(0.01) probably_damaging(0.927) TCGA-D5-6530-01 16 72138985 72138985 G - DHX38 Frame_Shift_Del p.A739Pfs*17 0.29 TCGA-D5-6530-01 16 72153745 72153745 C T PMFBP1 Intron 0.32 TCGA-D5-6530-01 16 72821960 72821960 G - ZFHX3 Frame_Shift_Del p.A3407Lfs*78 0.29 TCGA-D5-6530-01 16 75564991 75564991 C T CHST5 5'UTR 0.33 TCGA-D5-6530-01 16 78458875 78458875 C T WWOX Silent p.Y238Y 0.36 TCGA-D5-6530-01 16 81058342 81058342 C T CENPN Missense_Mutation p.T219M 0.23 tolerated(0.21) possibly_damaging(0.833) TCGA-D5-6530-01 16 83065800 83065800 A - CDH13 Frame_Shift_Del p.D163Tfs*31 0.28 TCGA-D5-6530-01 16 84031909 84031909 A C NECAB2 Silent p.R317R 0.41 TCGA-D5-6530-01 16 84089676 84089676 G A MBTPS1 Nonsense_Mutation p.R966* 0.29 TCGA-D5-6530-01 16 84121020 84121020 G A MBTPS1 Silent p.G359G 0.33 TCGA-D5-6530-01 16 84188289 84188289 C T DNAAF1 Missense_Mutation p.R154C 0.36 deleterious(0) probably_damaging(0.988) TCGA-D5-6530-01 16 84230256 84230256 C T ADAD2 Silent p.A592A 0.41 TCGA-D5-6530-01 16 84695238 84695238 G A KLHL36 Silent p.G450G 0.43 TCGA-D5-6530-01 16 86565789 86565789 C T MTHFSD Missense_Mutation p.R327Q 0.34 tolerated(0.08) benign(0.272) TCGA-D5-6530-01 16 88039710 88039710 G A BANP Missense_Mutation p.R157H 0.22 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-D5-6530-01 16 88504203 88504203 G - ZNF469 Frame_Shift_Del p.R3417Gfs*56 0.30 TCGA-D5-6530-01 16 88600158 88600158 C A ZFPM1 Missense_Mutation p.L598I 0.44 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 16 88773565 88773565 G T CTU2 Missense_Mutation p.K30N 0.36 deleterious(0) possibly_damaging(0.842) TCGA-D5-6530-01 16 88909187 88909187 C T GALNS Silent p.P57P 0.28 TCGA-D5-6530-01 16 88926002 88926012 GAGGGCCCACA - TRAPPC2L Intron 0.17 TCGA-D5-6530-01 16 89805612 89805612 G A FANCA Nonsense_Mutation p.Q1366* 0.37 TCGA-D5-6530-01 17 10297713 10297713 C T MYH8 Silent p.Q1673Q 0.35 TCGA-D5-6530-01 17 10402047 10402047 G A MYH1 Silent p.A1359A 0.38 TCGA-D5-6530-01 17 10442537 10442537 A G MYH2 Silent p.G467G 0.35 TCGA-D5-6530-01 17 10558351 10558351 C T MYH3 Missense_Mutation p.G11S 0.35 deleterious(0) probably_damaging(0.996) TCGA-D5-6530-01 17 12897142 12897142 C T ELAC2 Silent p.T705T 0.32 TCGA-D5-6530-01 17 15234424 15234424 A G TEKT3 Missense_Mutation p.I160T 0.34 deleterious(0) possibly_damaging(0.868) TCGA-D5-6530-01 17 15341514 15341514 A G CDRT4 Missense_Mutation p.L11P 0.35 deleterious(0.03) probably_damaging(0.955) TCGA-D5-6530-01 17 16012226 16012226 T A NCOR1 Missense_Mutation p.T686S 0.42 benign(0.001) TCGA-D5-6530-01 17 1630113 1630113 G T WDR81 Missense_Mutation p.E620D 0.45 tolerated(0.29) possibly_damaging(0.802) TCGA-D5-6530-01 17 16347427 16347427 G A FAM211A Silent p.A170A 0.36 TCGA-D5-6530-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.27 TCGA-D5-6530-01 17 18023293 18023293 C - MYO15A Frame_Shift_Del p.E396Rfs*48 0.28 TCGA-D5-6530-01 17 18244079 18244079 C T SHMT1 Missense_Mutation p.A190T 0.31 deleterious(0) probably_damaging(0.953) TCGA-D5-6530-01 17 18881835 18881835 C T FAM83G Missense_Mutation p.A382T 0.31 tolerated(0.11) benign(0.051) TCGA-D5-6530-01 17 19687019 19687019 C T ULK2 Silent p.T817T 0.27 TCGA-D5-6530-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.38 TCGA-D5-6530-01 17 2317712 2317712 C T AC006435.1 Missense_Mutation p.R75H 0.33 unknown(0) TCGA-D5-6530-01 17 25974349 25974349 G A LGALS9 Missense_Mutation p.R271H 0.33 deleterious(0.02) probably_damaging(0.974) TCGA-D5-6530-01 17 26958927 26958928 - A KIAA0100 Frame_Shift_Ins p.W1336Lfs*13 0.30 TCGA-D5-6530-01 17 27076256 27076256 T C TRAF4 Silent p.G358G 0.34 TCGA-D5-6530-01 17 27251076 27251076 T C PHF12 Missense_Mutation p.D189G 0.30 deleterious(0.04) possibly_damaging(0.701) TCGA-D5-6530-01 17 28960265 28960265 C T LRRC37BP1 RNA 0.35 TCGA-D5-6530-01 17 29214268 29214268 T C ATAD5 Missense_Mutation p.V1379A 0.31 tolerated(0.09) benign(0.001) TCGA-D5-6530-01 17 29220696 29220696 G A ATAD5 Missense_Mutation p.E1609K 0.34 tolerated(0.28) benign(0.046) TCGA-D5-6530-01 17 29585479 29585479 C T NF1 Missense_Mutation p.P1431S 0.25 tolerated(0.06) probably_damaging(0.996) TCGA-D5-6530-01 17 29645207 29645207 C T EVI2A 3'UTR 0.41 TCGA-D5-6530-01 17 3182181 3182181 C T OR3A2 Missense_Mutation p.A17T 0.31 tolerated(0.61) benign(0.002) TCGA-D5-6530-01 17 34848689 34848689 A - ZNHIT3 Frame_Shift_Del p.I53* 0.25 TCGA-D5-6530-01 17 34956439 34956439 C T DHRS11 Silent p.Y238Y 0.31 TCGA-D5-6530-01 17 35295455 35295456 - CT LHX1 5'UTR 0.31 TCGA-D5-6530-01 17 36646718 36646718 G A ARHGAP23 Missense_Mutation p.G1026R 0.13 tolerated(0.06) probably_damaging(0.936) TCGA-D5-6530-01 17 36872653 36872653 C T MLLT6 Missense_Mutation p.A357V 0.35 deleterious(0.01) unknown(0) TCGA-D5-6530-01 17 37343180 37343180 T C CACNB1 Silent p.K139K 0.30 TCGA-D5-6530-01 17 37369333 37369333 A G STAC2 Missense_Mutation p.V349A 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-D5-6530-01 17 37825881 37825881 G A PNMT Splice_Site p.X68_splice 0.34 TCGA-D5-6530-01 17 37883770 37883770 G A ERBB2 Missense_Mutation p.V1128I 0.32 tolerated(0.24) benign(0.002) TCGA-D5-6530-01 17 38151735 38151735 G A PSMD3 Silent p.K425K 0.32 TCGA-D5-6530-01 17 38816367 38816367 T - KRT222 Frame_Shift_Del p.E107Sfs*5 0.26 TCGA-D5-6530-01 17 38911458 38911458 T A KRT25 Missense_Mutation p.R22S 0.34 deleterious(0.04) benign(0.156) TCGA-D5-6530-01 17 39296289 39296289 G A KRTAP4-6 Missense_Mutation p.R151C 0.23 deleterious(0.02) unknown(0) TCGA-D5-6530-01 17 39564815 39564815 T - AC003958.2 RNA 0.36 TCGA-D5-6530-01 17 39593756 39593756 C T KRT38 Missense_Mutation p.V427M 0.31 tolerated(0.15) benign(0.247) TCGA-D5-6530-01 17 40001975 40001975 G A KLHL10 Missense_Mutation p.A428T 0.39 deleterious(0) probably_damaging(0.991) TCGA-D5-6530-01 17 40101477 40101477 G A TTC25 Splice_Site 0.45 TCGA-D5-6530-01 17 40362447 40362447 T - STAT5B Frame_Shift_Del p.K583Nfs*16 0.25 TCGA-D5-6530-01 17 41008546 41008546 C T AOC3 Silent p.H757H 0.30 TCGA-D5-6530-01 17 41345186 41345186 G A NBR1 Silent p.G383G 0.37 TCGA-D5-6530-01 17 41903145 41903145 G A MPP3 Silent p.P196P 0.31 TCGA-D5-6530-01 17 42254620 42254620 T C ASB16 Intron 0.31 TCGA-D5-6530-01 17 42284631 42284631 G T UBTF Silent p.S758S 0.36 TCGA-D5-6530-01 17 42289094 42289094 G A UBTF Silent p.C309C 0.36 TCGA-D5-6530-01 17 43003639 43003639 C T KIF18B Intron 0.38 TCGA-D5-6530-01 17 43530821 43530821 C A PLEKHM1 Missense_Mutation p.E799D 0.33 tolerated(0.29) benign(0.193) TCGA-D5-6530-01 17 45517859 45517859 A G EFCAB13 Missense_Mutation p.K901E 0.36 tolerated(0.16) benign(0.026) TCGA-D5-6530-01 17 45608742 45608744 CTT - NPEPPS In_Frame_Del p.L27del 0.37 TCGA-D5-6530-01 17 46673683 46673683 C A HOXB6 3'UTR 0.35 TCGA-D5-6530-01 17 47590261 47590261 A G NGFR Missense_Mutation p.T392A 0.34 tolerated(0.83) benign(0.001) TCGA-D5-6530-01 17 48187332 48187332 G A PDK2 Silent p.T365T 0.40 TCGA-D5-6530-01 17 48243434 48243434 C T SGCA Silent p.L11L 0.33 TCGA-D5-6530-01 17 4875738 4875738 G - CAMTA2 Frame_Shift_Del p.P889Lfs*9 0.35 TCGA-D5-6530-01 17 4996964 4996964 G A ZFP3 3'UTR 0.32 TCGA-D5-6530-01 17 526891 526891 C T VPS53 Missense_Mutation p.R333H 0.26 tolerated(0.14) benign(0.005) TCGA-D5-6530-01 17 54672418 54672418 T C NOG 3'UTR 0.38 TCGA-D5-6530-01 17 54921519 54921519 A - DGKE Frame_Shift_Del p.T204Qfs*6 0.28 TCGA-D5-6530-01 17 55729516 55729516 G T MSI2 Nonsense_Mutation p.G262* 0.37 TCGA-D5-6530-01 17 56585615 56585616 - G MTMR4 Frame_Shift_Ins p.Q191Pfs*11 0.34 TCGA-D5-6530-01 17 57652761 57652761 A G DHX40 Missense_Mutation p.Y301C 0.34 tolerated(0.09) benign(0.071) TCGA-D5-6530-01 17 600662 600662 C T VPS53 Missense_Mutation p.R94Q 0.33 tolerated(0.36) benign(0.016) TCGA-D5-6530-01 17 60802357 60802357 G A MARCH10 Silent p.S682S 0.37 TCGA-D5-6530-01 17 61611392 61611392 C T KCNH6 Missense_Mutation p.T274M 0.35 deleterious(0) possibly_damaging(0.868) TCGA-D5-6530-01 17 61914915 61914915 G - SMARCD2 Frame_Shift_Del p.P96Hfs*16 0.29 TCGA-D5-6530-01 17 62045632 62045632 C T SCN4A Missense_Mutation p.V263I 0.34 tolerated(0.41) probably_damaging(0.997) TCGA-D5-6530-01 17 62541846 62541855 AAAAAAGGGG - SMURF2 3'UTR 0.30 TCGA-D5-6530-01 17 62856352 62856352 T - LRRC37A3 Frame_Shift_Del p.K1304Nfs*11 0.31 TCGA-D5-6530-01 17 63173912 63173912 G T RGS9 Missense_Mutation p.K215N 0.32 tolerated(0.07) benign(0.037) TCGA-D5-6530-01 17 6350865 6350867 AGA - FAM64A In_Frame_Del p.K127del 0.31 TCGA-D5-6530-01 17 6498321 6498321 G T KIAA0753 Missense_Mutation p.P804H 0.32 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 17 65346394 65346394 G T PSMD12 Missense_Mutation p.P119H 0.30 deleterious(0.04) benign(0.227) TCGA-D5-6530-01 17 65942112 65942112 C T BPTF Missense_Mutation p.P2430S 0.35 probably_damaging(0.994) TCGA-D5-6530-01 17 67280137 67280137 G A ABCA5 Silent p.D783D 0.05 TCGA-D5-6530-01 17 68174798 68174799 - G KCNJ2 3'UTR 0.19 TCGA-D5-6530-01 17 6913121 6913121 C T AC027763.2 Missense_Mutation p.A31T 0.25 TCGA-D5-6530-01 17 72954468 72954468 A G HID1 Missense_Mutation p.M449T 0.38 deleterious(0.03) benign(0.117) TCGA-D5-6530-01 17 7320373 7320373 G A NLGN2 Missense_Mutation p.R588H 0.33 deleterious(0) probably_damaging(0.988) TCGA-D5-6530-01 17 73237564 73237564 C T GGA3 Missense_Mutation p.R288Q 0.31 tolerated(0.66) possibly_damaging(0.595) TCGA-D5-6530-01 17 73513286 73513286 G A TSEN54 Silent p.Q110Q 0.33 TCGA-D5-6530-01 17 73569598 73569599 TC - LLGL2 Frame_Shift_Del p.S924Hfs*23 0.36 TCGA-D5-6530-01 17 7365065 7365065 C T ZBTB4 3'UTR 0.45 TCGA-D5-6530-01 17 73819516 73819516 C T UNK Silent p.P730P 0.41 TCGA-D5-6530-01 17 74085308 74085308 G A EXOC7 Missense_Mutation p.A383V 0.32 tolerated(0.28) benign(0.005) TCGA-D5-6530-01 17 7492497 7492497 G - SOX15 Frame_Shift_Del p.S167Afs*64 0.33 TCGA-D5-6530-01 17 76117168 76117168 G - TMC6 Frame_Shift_Del p.Y488Tfs*67 0.29 TCGA-D5-6530-01 17 76354724 76354724 C T SOCS3 Silent p.P151P 0.34 TCGA-D5-6530-01 17 7695366 7695366 C T DNAH2 Silent p.I2344I 0.33 TCGA-D5-6530-01 17 7736238 7736238 C - DNAH2 Frame_Shift_Del p.K4326Rfs*84 0.28 TCGA-D5-6530-01 17 7751995 7751995 C - KDM6B Frame_Shift_Del p.S799Afs*95 0.30 TCGA-D5-6530-01 17 7752144 7752144 C T KDM6B Silent p.T846T 0.44 TCGA-D5-6530-01 17 7798765 7798765 C - CHD3 Frame_Shift_Del p.R599Vfs*16 0.30 TCGA-D5-6530-01 17 78112909 78112909 C A EIF4A3 Missense_Mutation p.Q213H 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 17 78172335 78172335 C - CARD14 Frame_Shift_Del p.P600Rfs*17 0.30 TCGA-D5-6530-01 17 7826808 7826808 G A KCNAB3 Missense_Mutation p.A368V 0.28 tolerated(0.94) benign(0.092) TCGA-D5-6530-01 17 78272295 78272295 G A RNF213 Silent p.P729P 0.39 TCGA-D5-6530-01 17 79226471 79226471 G T SLC38A10 Missense_Mutation p.P490H 0.28 deleterious(0) probably_damaging(0.968) TCGA-D5-6530-01 17 80012561 80012561 G A GPS1 Missense_Mutation p.D202N 0.36 tolerated(0.53) possibly_damaging(0.875) TCGA-D5-6530-01 17 80273294 80273295 CA - CD7 Frame_Shift_Del p.C209Lfs*5 0.21 TCGA-D5-6530-01 17 8136272 8136276 GGCAG - CTC1 Frame_Shift_Del p.C632Afs*11 0.28 TCGA-D5-6530-01 17 8784019 8784019 G A PIK3R5 Silent p.A860A 0.35 TCGA-D5-6530-01 17 8926120 8926120 G C NTN1 Missense_Mutation p.V144L 0.33 tolerated(1) possibly_damaging(0.544) TCGA-D5-6530-01 17 909374 909374 G - ABR Frame_Shift_Del p.I843Ffs*41 0.31 TCGA-D5-6530-01 17 9801318 9801318 C T RCVRN 3'UTR 0.38 TCGA-D5-6530-01 18 13067915 13067915 G A CEP192 Missense_Mutation p.R1525Q 0.39 deleterious(0.01) possibly_damaging(0.748) TCGA-D5-6530-01 18 19371465 19371465 C T MIB1 Nonsense_Mutation p.R347* 0.28 TCGA-D5-6530-01 18 24127222 24127222 C T KCTD1 Intron 0.34 TCGA-D5-6530-01 18 2544202 2544202 G A METTL4 Missense_Mutation p.P422L 0.30 deleterious(0.02) possibly_damaging(0.655) TCGA-D5-6530-01 18 2729369 2729369 A - SMCHD1 Frame_Shift_Del p.D1006Tfs*39 0.27 TCGA-D5-6530-01 18 31319986 31319986 A - ASXL3 Frame_Shift_Del p.V876Cfs*59 0.38 TCGA-D5-6530-01 18 31323936 31323936 C T ASXL3 Missense_Mutation p.A1375V 0.34 benign(0.018) TCGA-D5-6530-01 18 32681941 32681941 G A MAPRE2 Missense_Mutation p.R143H 0.35 deleterious(0) possibly_damaging(0.806) TCGA-D5-6530-01 18 32888391 32888391 A G ZNF271 RNA 0.34 TCGA-D5-6530-01 18 33289747 33289747 A - GALNT1 3'UTR 0.29 TCGA-D5-6530-01 18 43243755 43243755 G A SLC14A2 Missense_Mutation p.G453S 0.33 tolerated_low_confidence(0.87) benign(0.004) TCGA-D5-6530-01 18 43496051 43496051 T C EPG5 Missense_Mutation p.M1169V 0.39 tolerated(0.14) possibly_damaging(0.455) TCGA-D5-6530-01 18 48510948 48510949 - T ELAC1 Intron 0.22 TCGA-D5-6530-01 18 51691027 51691027 A G MBD2 Silent p.V325V 0.30 TCGA-D5-6530-01 18 5290817 5290817 G A ZBTB14 3'UTR 0.31 TCGA-D5-6530-01 18 5291558 5291558 C T ZBTB14 Missense_Mutation p.G217S 0.24 tolerated(0.34) benign(0.084) TCGA-D5-6530-01 18 55373789 55373789 C T ATP8B1 Missense_Mutation p.R71H 0.33 deleterious(0.02) benign(0.082) TCGA-D5-6530-01 18 59824998 59824998 G A PIGN Missense_Mutation p.R89C 0.36 deleterious(0) probably_damaging(0.971) TCGA-D5-6530-01 18 724268 724268 A - YES1 3'UTR 0.28 TCGA-D5-6530-01 18 73139437 73139437 C T SMIM21 Missense_Mutation p.G28R 0.30 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-D5-6530-01 18 77089198 77089198 A G ATP9B Missense_Mutation p.T611A 0.39 tolerated(0.32) benign(0.005) TCGA-D5-6530-01 18 77170501 77170501 A G NFATC1 Missense_Mutation p.T63A 0.26 tolerated(0.93) benign(0.001) TCGA-D5-6530-01 18 77659123 77659123 C T KCNG2 Silent p.R236R 0.46 TCGA-D5-6530-01 18 77894260 77894261 - C ADNP2 Frame_Shift_Ins p.A325Cfs*59 0.28 TCGA-D5-6530-01 18 8296380 8296380 G A PTPRM Silent p.G923G 0.31 TCGA-D5-6530-01 19 10463113 10463113 G - TYK2 Frame_Shift_Del p.T1106Rfs*7 0.29 TCGA-D5-6530-01 19 1085958 1085958 C T HMHA1 Missense_Mutation p.R1138W 0.36 tolerated_low_confidence(0.07) benign(0.004) TCGA-D5-6530-01 19 1091848 1091850 CTC - POLR2E In_Frame_Del p.E97del 0.32 TCGA-D5-6530-01 19 12256107 12256107 G A ZNF625 3'UTR 0.36 TCGA-D5-6530-01 19 12502591 12542363 19:12502591-12542363 - ZNF799 large deletion 0.22 TCGA-D5-6530-01 19 12788131 12788131 G - DHPS Frame_Shift_Del p.P253Rfs*11 0.26 TCGA-D5-6530-01 19 12817414 12817414 C T TNPO2 Missense_Mutation p.G489D 0.32 tolerated(0.22) benign(0.002) TCGA-D5-6530-01 19 13397338 13397338 G - CACNA1A Frame_Shift_Del p.L1178Sfs*8 0.14 TCGA-D5-6530-01 19 14507239 14507239 C T CD97 Silent p.C144C 0.18 TCGA-D5-6530-01 19 14517194 14517194 G A CD97 Missense_Mutation p.A625T 0.33 deleterious(0) probably_damaging(0.986) TCGA-D5-6530-01 19 15198894 15198894 C T OR1I1 Missense_Mutation p.P340S 0.33 tolerated_low_confidence(0.05) possibly_damaging(0.857) TCGA-D5-6530-01 19 15198938 15198938 G T OR1I1 Missense_Mutation p.M354I 0.35 tolerated_low_confidence(0.13) benign(0) TCGA-D5-6530-01 19 15565195 15565195 T C RASAL3 Missense_Mutation p.T713A 0.45 tolerated(0.16) probably_damaging(0.996) TCGA-D5-6530-01 19 15586515 15586515 G A PGLYRP2 Silent p.N322N 0.38 TCGA-D5-6530-01 19 15989728 15989728 C T CYP4F2 Silent p.T472T 0.25 TCGA-D5-6530-01 19 16601243 16601243 T A CALR3 Missense_Mutation p.K111M 0.34 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 19 16631742 16631742 C T C19orf44 3'UTR 0.27 TCGA-D5-6530-01 19 17039883 17039884 - C CPAMD8 Frame_Shift_Ins p.H1052Afs*30 0.33 TCGA-D5-6530-01 19 17441686 17441686 G A ANO8 Missense_Mutation p.T315M 0.28 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 19 1775331 1775331 G A ONECUT3 Missense_Mutation p.V458I 0.34 deleterious(0.04) probably_damaging(0.967) TCGA-D5-6530-01 19 17922553 17922553 T - B3GNT3 Frame_Shift_Del p.W249Gfs*10 0.11 TCGA-D5-6530-01 19 18053481 18053481 G A CCDC124 Missense_Mutation p.R59Q 0.39 deleterious(0.01) possibly_damaging(0.573) TCGA-D5-6530-01 19 18255899 18255899 C T MAST3 Nonsense_Mutation p.R938* 0.32 TCGA-D5-6530-01 19 18279586 18279586 G A PIK3R2 Missense_Mutation p.R620H 0.33 deleterious(0.05) benign(0.011) TCGA-D5-6530-01 19 18547527 18547527 C T ISYNA1 Silent p.A192A 0.32 TCGA-D5-6530-01 19 19241060 19241060 C T TMEM161A Missense_Mutation p.R167H 0.36 deleterious(0.01) benign(0.365) TCGA-D5-6530-01 19 19309496 19309496 C T RFXANK Missense_Mutation p.R199C 0.46 tolerated(0.11) probably_damaging(0.993) TCGA-D5-6530-01 19 19672896 19672896 G - PBX4 Frame_Shift_Del p.Q355Nfs*25 0.25 TCGA-D5-6530-01 19 19681560 19681560 G A PBX4 Silent p.G92G 0.35 TCGA-D5-6530-01 19 21990311 21990311 T C ZNF43 3'UTR 0.35 TCGA-D5-6530-01 19 22363105 22363105 C T ZNF676 Missense_Mutation p.A472T 0.31 tolerated(1) benign(0.012) TCGA-D5-6530-01 19 2269719 2269719 G A OAZ1 Missense_Mutation p.S41N 0.36 deleterious(0.04) benign(0.159) TCGA-D5-6530-01 19 2808350 2808350 C T THOP1 Missense_Mutation p.P455S 0.41 deleterious(0.03) benign(0.167) TCGA-D5-6530-01 19 3027854 3027854 G A TLE2 Silent p.Y68Y 0.34 TCGA-D5-6530-01 19 3061244 3061244 G T AES Missense_Mutation p.H80Q 0.32 deleterious_low_confidence(0.03) benign(0.015) TCGA-D5-6530-01 19 35718981 35718981 G A FAM187B Silent p.C201C 0.36 TCGA-D5-6530-01 19 35773449 35773449 C T HAMP 5'UTR 0.36 TCGA-D5-6530-01 19 3586865 3586865 C T GIPC3 Silent p.D155D 0.36 TCGA-D5-6530-01 19 36135659 36135659 G - ETV2 Frame_Shift_Del p.R314Efs*14 0.28 TCGA-D5-6530-01 19 36220105 36220105 G A KMT2B Missense_Mutation p.V1609I 0.36 probably_damaging(0.939) TCGA-D5-6530-01 19 36228979 36228979 C T KMT2B Nonsense_Mutation p.R2587* 0.26 TCGA-D5-6530-01 19 36229558 36229558 C - KMT2B 3'UTR 0.23 TCGA-D5-6530-01 19 36361882 36361882 G A APLP1 Missense_Mutation p.G126S 0.39 tolerated(0.66) benign(0.01) TCGA-D5-6530-01 19 36496278 36496278 C T SYNE4 Missense_Mutation p.R310H 0.34 tolerated_low_confidence(1) benign(0) TCGA-D5-6530-01 19 37734148 37734148 C T ZNF383 Missense_Mutation p.P337L 0.05 tolerated(0.09) probably_damaging(0.999) TCGA-D5-6530-01 19 3813842 3813842 G A ZFR2 Missense_Mutation p.R740W 0.12 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 19 3816720 3816720 C T ZFR2 Silent p.T685T 0.41 TCGA-D5-6530-01 19 38188064 38188064 A G ZNF607 3'UTR 0.42 TCGA-D5-6530-01 19 38375483 38375483 G A WDR87 3'Flank 0.25 TCGA-D5-6530-01 19 38704352 38704352 C T DPF1 Missense_Mutation p.V342M 0.35 deleterious(0) probably_damaging(0.977) TCGA-D5-6530-01 19 39051893 39051893 C T RYR1 Silent p.N4141N 0.33 TCGA-D5-6530-01 19 39380378 39380378 G A SIRT2 Missense_Mutation p.P128L 0.39 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 19 39423091 39423091 G A MRPS12 Silent p.P56P 0.28 TCGA-D5-6530-01 19 39664497 39664497 C T PAK4 Silent p.G315G 0.37 TCGA-D5-6530-01 19 40197832 40197832 T C LGALS14 Missense_Mutation p.L65P 0.35 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 19 40366085 40366085 C T FCGBP Missense_Mutation p.A4717T 0.39 possibly_damaging(0.449) TCGA-D5-6530-01 19 40424492 40424492 A T FCGBP Missense_Mutation p.Y571N 0.39 probably_damaging(0.992) TCGA-D5-6530-01 19 40721012 40721012 G A MAP3K10 Missense_Mutation p.R893H 0.38 deleterious(0) possibly_damaging(0.902) TCGA-D5-6530-01 19 41286403 41286403 C T RAB4B Missense_Mutation p.R71W 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 19 4210314 4210314 G A ANKRD24 Missense_Mutation p.R335H 0.37 tolerated(0.07) possibly_damaging(0.84) TCGA-D5-6530-01 19 42797376 42797376 C - CIC Frame_Shift_Del p.P1248Hfs*54 0.30 TCGA-D5-6530-01 19 42797806 42797807 - G CIC Frame_Shift_Ins p.E1288Gfs*56 0.25 TCGA-D5-6530-01 19 42806346 42806346 C - PAFAH1B3 Intron 0.32 TCGA-D5-6530-01 19 43689109 43689109 G A PSG5 Silent p.D85D 0.40 TCGA-D5-6530-01 19 44224168 44224168 A - IRGC 3'UTR 0.28 TCGA-D5-6530-01 19 44471461 44471461 A G ZNF221 Missense_Mutation p.T603A 0.32 deleterious_low_confidence(0.04) benign(0.003) TCGA-D5-6530-01 19 44661251 44661251 C T ZNF234 Missense_Mutation p.A361V 0.36 tolerated(0.25) possibly_damaging(0.799) TCGA-D5-6530-01 19 44892162 44892162 C T ZNF285 Missense_Mutation p.R82Q 0.31 tolerated(0.33) benign(0.001) TCGA-D5-6530-01 19 4512809 4512809 C - PLIN4 Frame_Shift_Del p.G374Afs*35 0.36 TCGA-D5-6530-01 19 46850392 46850393 - C PPP5C Frame_Shift_Ins p.R16Pfs*7 0.32 TCGA-D5-6530-01 19 46890686 46890686 C T PPP5C Missense_Mutation p.R371W 0.31 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 19 47204178 47204178 G A PRKD2 Silent p.S333S 0.33 TCGA-D5-6530-01 19 47569928 47569928 T C ZC3H4 Silent p.P1199P 0.26 TCGA-D5-6530-01 19 4817900 4817900 A G TICAM1 Missense_Mutation p.C164R 0.33 tolerated(0.32) benign(0.007) TCGA-D5-6530-01 19 49299709 49299709 G A BCAT2 Silent p.F372F 0.33 TCGA-D5-6530-01 19 49344516 49344516 G A PLEKHA4 Missense_Mutation p.R599C 0.32 deleterious(0) probably_damaging(0.91) TCGA-D5-6530-01 19 49459501 49459501 C T BAX Nonsense_Mutation p.R94* 0.39 TCGA-D5-6530-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.32 TCGA-D5-6530-01 19 49969002 49969002 C - ALDH16A1 Frame_Shift_Del p.Y528Mfs*99 0.32 TCGA-D5-6530-01 19 50027789 50027789 C A FCGRT Silent p.A209A 0.36 TCGA-D5-6530-01 19 50059986 50059986 G A NOSIP Missense_Mutation p.T182M 0.06 deleterious(0.03) benign(0.405) TCGA-D5-6530-01 19 50098833 50098833 C - PRR12 Frame_Shift_Del p.K416Nfs*54 0.27 TCGA-D5-6530-01 19 50247498 50247498 G A TSKS Missense_Mutation p.R451C 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D5-6530-01 19 50333112 50333113 - C MED25 Frame_Shift_Ins p.A202Gfs*197 0.33 TCGA-D5-6530-01 19 5039855 5039855 C T KDM4B Silent p.P50P 0.34 TCGA-D5-6530-01 19 50753777 50753777 C - MYH14 Frame_Shift_Del p.P556Lfs*25 0.27 TCGA-D5-6530-01 19 51274812 51274812 G A GPR32 Missense_Mutation p.V319I 0.35 tolerated(1) benign(0.002) TCGA-D5-6530-01 19 52131216 52131216 C T SIGLEC5 Missense_Mutation p.A290T 0.28 tolerated(0.29) benign(0.021) TCGA-D5-6530-01 19 52195977 52195977 T G SPACA6P-AS RNA 0.23 TCGA-D5-6530-01 19 52376383 52376383 G A ZNF577 Missense_Mutation p.A287V 0.32 tolerated(0.19) possibly_damaging(0.683) TCGA-D5-6530-01 19 52659352 52659352 G A ZNF836 Silent p.C528C 0.32 TCGA-D5-6530-01 19 52919444 52919445 AG - ZNF528 Frame_Shift_Del p.E448Vfs*12 0.24 TCGA-D5-6530-01 19 53058550 53058550 C T ZNF808 Missense_Mutation p.T794M 0.37 deleterious(0.03) benign(0.116) TCGA-D5-6530-01 19 53321215 53321215 T C ZNF28 5'UTR 0.27 TCGA-D5-6530-01 19 53993860 53993860 G A ZNF813 Missense_Mutation p.R125Q 0.35 tolerated(1) benign(0.052) TCGA-D5-6530-01 19 54206066 54206066 C T MIR518B RNA 0.37 TCGA-D5-6530-01 19 54445334 54445334 G A CACNG7 Silent p.A205A 0.28 TCGA-D5-6530-01 19 54761060 54761060 G A LILRB5 5'UTR 0.37 TCGA-D5-6530-01 19 54850148 54850148 C T LILRA4 Missense_Mutation p.R20Q 0.38 tolerated(0.66) benign(0.002) TCGA-D5-6530-01 19 55493571 55493571 C T NLRP2 Missense_Mutation p.R169W 0.38 tolerated(0.19) benign(0.001) TCGA-D5-6530-01 19 55828314 55828314 C T TMEM150B Silent p.T115T 0.32 TCGA-D5-6530-01 19 5604916 5604916 C T SAFB2 Missense_Mutation p.R443H 0.43 deleterious(0.01) possibly_damaging(0.751) TCGA-D5-6530-01 19 5687941 5687941 G A HSD11B1L Missense_Mutation p.R228Q 0.34 tolerated(0.6) benign(0.065) TCGA-D5-6530-01 19 57089279 57089279 G A ZNF470 Silent p.T494T 0.39 TCGA-D5-6530-01 19 57135024 57135024 G A ZNF71 3'UTR 0.35 TCGA-D5-6530-01 19 5744462 5744462 G A CATSPERD Missense_Mutation p.G200R 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 19 5772829 5772829 C T CATSPERD Silent p.I598I 0.29 TCGA-D5-6530-01 19 57868214 57868215 AG - ZNF304 Frame_Shift_Del p.R327Sfs*9 0.27 TCGA-D5-6530-01 19 57932324 57932324 T C ZNF17 Silent p.H488H 0.28 TCGA-D5-6530-01 19 58145404 58145404 C T ZNF211 Missense_Mutation p.T35I 0.29 tolerated(0.07) benign(0.052) TCGA-D5-6530-01 19 5867682 5867682 C T AC024592.12 Missense_Mutation p.R151Q 0.38 tolerated_low_confidence(0.09) benign(0.412) TCGA-D5-6530-01 19 5897001 5897001 G A NDUFA11 Silent p.T35T 0.37 TCGA-D5-6530-01 19 643296 643297 - T FGF22 Frame_Shift_Ins p.Y94Lfs*81 0.25 TCGA-D5-6530-01 19 6477410 6477410 C A DENND1C Missense_Mutation p.Q142H 0.36 tolerated(0.16) benign(0.029) TCGA-D5-6530-01 19 6710748 6710748 G A C3 Missense_Mutation p.R530C 0.38 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 19 6746045 6746045 C - TRIP10 Intron 0.36 TCGA-D5-6530-01 19 6919686 6919687 - G EMR1 Frame_Shift_Ins p.I519Hfs*28 0.28 TCGA-D5-6530-01 19 7607451 7607451 G A PNPLA6 Silent p.L428L 0.42 TCGA-D5-6530-01 19 8174629 8174629 C T FBN3 Missense_Mutation p.E1448K 0.40 deleterious(0.01) probably_damaging(1) TCGA-D5-6530-01 19 8841754 8841754 C T OR2Z1 Missense_Mutation p.R122C 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6530-01 19 9362217 9362217 T - OR7E24 Frame_Shift_Del p.F168Lfs*12 0.27 TCGA-D5-6530-01 1 100380997 100380997 A - AGL Frame_Shift_Del p.K1407Nfs*8 0.36 TCGA-D5-6530-01 1 100889837 100889837 C - CDC14A Frame_Shift_Del p.Y126Ifs*64 0.28 TCGA-D5-6530-01 1 101431342 101431348 AGTTTAC - SLC30A7 Frame_Shift_Del p.S320Rfs*17 0.16 TCGA-D5-6530-01 1 101490961 101490961 C T DPH5 Silent p.K13K 0.33 TCGA-D5-6530-01 1 104114006 104114007 - A AMY2B Intron 0.31 TCGA-D5-6530-01 1 10471519 10471519 C T PGD Silent p.N188N 0.37 TCGA-D5-6530-01 1 10714581 10714583 TTC - CASZ1 In_Frame_Del p.K577del 0.40 TCGA-D5-6530-01 1 109805003 109805003 G A CELSR2 Missense_Mutation p.R1494H 0.36 tolerated(0.05) benign(0.177) TCGA-D5-6530-01 1 111959018 111959018 G A OVGP1 Silent p.D361D 0.33 TCGA-D5-6530-01 1 114511123 114511123 G A HIPK1 Missense_Mutation p.R875H 0.37 tolerated(0.12) benign(0.002) TCGA-D5-6530-01 1 114522214 114522214 C A OLFML3 Missense_Mutation p.L26I 0.38 tolerated(0.29) possibly_damaging(0.588) TCGA-D5-6530-01 1 114940225 114940232 TTTCGTTT CG TRIM33 3'UTR 0.08 TCGA-D5-6530-01 1 115256485 115256485 C T NRAS Missense_Mutation p.E76K 0.32 tolerated(0.08) benign(0.001) TCGA-D5-6530-01 1 117559868 117559868 G A CD101 Missense_Mutation p.G462D 0.34 tolerated(0.06) benign(0.021) TCGA-D5-6530-01 1 117624518 117624518 A - TTF2 Frame_Shift_Del p.K619Rfs*10 0.26 TCGA-D5-6530-01 1 1230919 1230919 C T ACAP3 Missense_Mutation p.R574H 0.31 deleterious(0.04) benign(0.002) TCGA-D5-6530-01 1 13448348 13448348 C T PRAMEF13 Missense_Mutation p.C376Y 0.29 deleterious(0) possibly_damaging(0.899) TCGA-D5-6530-01 1 1354383 1354383 C T ANKRD65 3'UTR 0.36 TCGA-D5-6530-01 1 145440043 145440043 T G TXNIP Silent p.P159P 0.33 TCGA-D5-6530-01 1 145578405 145578405 T C PIAS3 Missense_Mutation p.V123A 0.33 tolerated(0.12) probably_damaging(0.927) TCGA-D5-6530-01 1 145764952 145764952 T - GPR89A 3'UTR 0.32 TCGA-D5-6530-01 1 145811998 145811998 G A GPR89A Missense_Mutation p.R71C 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 1 1470622 1470622 G A TMEM240 3'UTR 0.39 TCGA-D5-6530-01 1 149895562 149895562 G - SF3B4 Frame_Shift_Del p.H383Mfs*75 0.23 TCGA-D5-6530-01 1 149906107 149906107 G A MTMR11 Silent p.N220N 0.37 TCGA-D5-6530-01 1 150684025 150684025 G A HORMAD1 Missense_Mutation p.P108L 0.31 deleterious(0.01) possibly_damaging(0.461) TCGA-D5-6530-01 1 150974774 150974774 C T FAM63A Missense_Mutation p.R155Q 0.41 tolerated(0.17) benign(0.025) TCGA-D5-6530-01 1 151040196 151040196 C A MLLT11 3'UTR 0.36 TCGA-D5-6530-01 1 151171459 151171459 A - PIP5K1A 5'UTR 0.22 TCGA-D5-6530-01 1 151316905 151316905 C T RFX5 Missense_Mutation p.R154Q 0.42 deleterious(0.01) probably_damaging(1) TCGA-D5-6530-01 1 151318741 151318741 G - RFX5 Frame_Shift_Del p.P19Qfs*28 0.45 TCGA-D5-6530-01 1 152193957 152193957 C T HRNR Missense_Mutation p.D50N 0.35 probably_damaging(0.99) TCGA-D5-6530-01 1 152325781 152325781 G A FLG2 Missense_Mutation p.T1494I 0.34 benign(0.039) TCGA-D5-6530-01 1 153789892 153789892 G A GATAD2B Missense_Mutation p.R286C 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 1 153916546 153916547 - G DENND4B Frame_Shift_Ins p.L102Pfs*3 0.28 TCGA-D5-6530-01 1 153958657 153958658 - C RAB13 Frame_Shift_Ins p.V19Gfs*26 0.26 TCGA-D5-6530-01 1 155168318 155168318 G A THBS3 Silent p.N652N 0.34 TCGA-D5-6530-01 1 155313242 155313242 C T ASH1L Missense_Mutation p.R2719H 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D5-6530-01 1 155720106 155720106 A - GON4L 3'UTR 0.18 TCGA-D5-6530-01 1 155736491 155736491 G A GON4L Missense_Mutation p.P925S 0.42 tolerated(0.12) probably_damaging(0.964) TCGA-D5-6530-01 1 155884186 155884186 A - KIAA0907 Intron 0.13 TCGA-D5-6530-01 1 156105741 156105741 G A LMNA Missense_Mutation p.R329H 0.39 tolerated(0.13) benign(0.039) TCGA-D5-6530-01 1 156213796 156213798 CTC - PAQR6 In_Frame_Del p.E304del 0.38 TCGA-D5-6530-01 1 156595206 156595206 G A HAPLN2 3'UTR 0.32 TCGA-D5-6530-01 1 156640832 156640832 C - NES Frame_Shift_Del p.A1050Pfs*14 0.31 TCGA-D5-6530-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.28 TCGA-D5-6530-01 1 156874572 156874572 G A PEAR1 Missense_Mutation p.R45H 0.37 tolerated(1) benign(0.005) TCGA-D5-6530-01 1 157670258 157670258 G T FCRL3 Missense_Mutation p.L8M 0.37 deleterious(0.02) benign(0.429) TCGA-D5-6530-01 1 158608027 158608027 G A SPTA1 Missense_Mutation p.A1662V 0.36 deleterious(0.05) benign(0.038) TCGA-D5-6530-01 1 158669739 158669739 C T OR6K2 Missense_Mutation p.R235H 0.39 deleterious(0.01) benign(0.365) TCGA-D5-6530-01 1 158735902 158735902 C A OR6N1 Missense_Mutation p.D191Y 0.35 deleterious(0) probably_damaging(0.992) TCGA-D5-6530-01 1 159900128 159900128 C - IGSF9 Frame_Shift_Del p.V639Yfs*114 0.29 TCGA-D5-6530-01 1 160000144 160000144 T C PIGM 3'UTR 0.35 TCGA-D5-6530-01 1 16111047 16111047 G A FBLIM1 Missense_Mutation p.C241Y 0.37 deleterious(0) possibly_damaging(0.588) TCGA-D5-6530-01 1 161163067 161163068 - G ADAMTS4 Frame_Shift_Ins p.Q616Pfs*48 0.30 TCGA-D5-6530-01 1 16259043 16259043 G - SPEN Frame_Shift_Del p.A2105Lfs*33 0.36 TCGA-D5-6530-01 1 16262680 16262680 C - SPEN Frame_Shift_Del p.P3317Rfs*83 0.29 TCGA-D5-6530-01 1 171086651 171086651 T A FMO3 3'UTR 0.41 TCGA-D5-6530-01 1 17395682 17395682 G A PADI2 Missense_Mutation p.R619C 0.36 tolerated(0.32) benign(0.006) TCGA-D5-6530-01 1 17411188 17411188 G A PADI2 Silent p.L282L 0.37 TCGA-D5-6530-01 1 175957465 175957465 T - RFWD2 Frame_Shift_Del p.N644Tfs*3 0.08 TCGA-D5-6530-01 1 178821913 178821913 C T ANGPTL1 Missense_Mutation p.R398H 0.36 deleterious(0.01) possibly_damaging(0.868) TCGA-D5-6530-01 1 179989699 179989699 T C CEP350 Silent p.S930S 0.32 TCGA-D5-6530-01 1 184764388 184764388 T C FAM129A Missense_Mutation p.D837G 0.39 tolerated_low_confidence(0.06) benign(0) TCGA-D5-6530-01 1 1848419 1848419 G A CALML6 Silent p.V135V 0.30 TCGA-D5-6530-01 1 184853831 184853831 G A FAM129A Silent p.H179H 0.38 TCGA-D5-6530-01 1 186645672 186645672 G A PTGS2 Silent p.C299C 0.36 TCGA-D5-6530-01 1 18811214 18811214 G A KLHDC7A 3'UTR 0.33 TCGA-D5-6530-01 1 19495979 19495980 CA - UBR4 Nonsense_Mutation p.C1230* 0.24 TCGA-D5-6530-01 1 197059363 197059363 C T ASPM Silent p.K3264K 0.34 TCGA-D5-6530-01 1 200377301 200377301 C A ZNF281 Silent p.V511V 0.38 TCGA-D5-6530-01 1 200877000 200877002 CTC - C1orf106 In_Frame_Del p.L189del 0.36 TCGA-D5-6530-01 1 202097555 202097555 C T GPR37L1 Silent p.C439C 0.38 TCGA-D5-6530-01 1 202127286 202127286 C T PTPN7 Missense_Mutation p.R194H 0.36 tolerated(1) benign(0) TCGA-D5-6530-01 1 203024613 203024613 C T PPFIA4 Missense_Mutation p.T122M 0.30 deleterious(0) benign(0.028) TCGA-D5-6530-01 1 203452619 203452619 C T PRELP Missense_Mutation p.R103C 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-D5-6530-01 1 203689767 203689767 G T ATP2B4 Nonsense_Mutation p.G833* 0.34 TCGA-D5-6530-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.30 TCGA-D5-6530-01 1 205116646 205116646 A C DSTYK 3'UTR 0.21 TCGA-D5-6530-01 1 205350918 205350918 G A LEMD1 Silent p.C138C 0.35 TCGA-D5-6530-01 1 205498455 205498455 C - CDK18 Frame_Shift_Del p.T391Qfs*8 0.33 TCGA-D5-6530-01 1 205589098 205589099 - A ELK4 Frame_Shift_Ins p.S359Ffs*37 0.36 TCGA-D5-6530-01 1 207076595 207076595 G A IL24 3'UTR 0.29 TCGA-D5-6530-01 1 2082411 2082411 T C PRKCZ Silent p.D290D 0.37 TCGA-D5-6530-01 1 208391087 208391087 C - PLXNA2 Frame_Shift_Del p.A61Pfs*13 0.27 TCGA-D5-6530-01 1 20881385 20881386 - T FAM43B 3'UTR 0.24 TCGA-D5-6530-01 1 21100122 21100122 T C HP1BP3 Intron 0.29 TCGA-D5-6530-01 1 21220104 21220104 C T EIF4G3 Missense_Mutation p.R670Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 1 214551397 214551397 G A PTPN14 Silent p.L865L 0.32 TCGA-D5-6530-01 1 214557484 214557484 G A PTPN14 Missense_Mutation p.R572W 0.38 tolerated(0.17) benign(0.386) TCGA-D5-6530-01 1 214830437 214830437 A T CENPF Missense_Mutation p.T2883S 0.39 probably_damaging(0.994) TCGA-D5-6530-01 1 21546549 21546549 G A ECE1 Missense_Mutation p.R738W 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 1 218036175 218036175 A - SPATA17 Frame_Shift_Del p.A357Lfs*13 0.23 TCGA-D5-6530-01 1 218614770 218614770 G A TGFB2 3'UTR 0.34 TCGA-D5-6530-01 1 22016545 22016545 A G USP48 Silent p.I977I 0.34 TCGA-D5-6530-01 1 22202738 22202738 C T HSPG2 Missense_Mutation p.R996H 0.34 benign(0.022) TCGA-D5-6530-01 1 222803301 222803301 G T MIA3 Missense_Mutation p.E913D 0.31 tolerated(0.61) benign(0.002) TCGA-D5-6530-01 1 222832966 222832966 C T MIA3 Silent p.I1591I 0.32 TCGA-D5-6530-01 1 22307647 22307647 G A CELA3B Missense_Mutation p.R115H 0.33 deleterious(0.02) benign(0.202) TCGA-D5-6530-01 1 223285697 223285697 A G TLR5 Missense_Mutation p.M226T 0.32 tolerated(0.1) benign(0.344) TCGA-D5-6530-01 1 228434396 228434396 G A OBSCN Missense_Mutation p.A1401T 0.31 benign(0.023) TCGA-D5-6530-01 1 228462511 228462511 C T OBSCN Silent p.G2349G 0.31 TCGA-D5-6530-01 1 23240025 23240025 C T EPHB2 Missense_Mutation p.R976W 0.36 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 1 232944618 232944618 A - MAP10 3'UTR 0.27 TCGA-D5-6530-01 1 233135051 233135051 C T PCNXL2 Silent p.P1801P 0.35 TCGA-D5-6530-01 1 233388513 233388513 T - PCNXL2 Frame_Shift_Del p.K619Rfs*52 0.28 TCGA-D5-6530-01 1 233394482 233394482 T - PCNXL2 Frame_Shift_Del p.I376Lfs*5 0.25 TCGA-D5-6530-01 1 233507889 233507889 G A MLK4 Missense_Mutation p.R553Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 1 23418523 23418523 A - LUZP1 Frame_Shift_Del p.F744Lfs*22 0.25 TCGA-D5-6530-01 1 235926039 235926039 A - LYST Frame_Shift_Del p.F2078Lfs*38 0.26 TCGA-D5-6530-01 1 23697152 23697152 G T C1orf213 3'UTR 0.39 TCGA-D5-6530-01 1 237655123 237655123 C T RYR2 Missense_Mutation p.H576Y 0.35 benign(0.151) TCGA-D5-6530-01 1 24413153 24413153 G A MYOM3 Silent p.I593I 0.43 TCGA-D5-6530-01 1 244220291 244220291 T - ZBTB18 3'UTR 0.23 TCGA-D5-6530-01 1 245850552 245850552 T A KIF26B Missense_Mutation p.S1423T 0.41 tolerated(0.5) unknown(0) TCGA-D5-6530-01 1 245862248 245862248 C T KIF26B Silent p.A2029A 0.35 TCGA-D5-6530-01 1 246704320 246704320 G A TFB2M 3'UTR 0.39 TCGA-D5-6530-01 1 247695143 247695143 C T OR2C3 Missense_Mutation p.R224Q 0.38 tolerated(0.6) benign(0.003) TCGA-D5-6530-01 1 247769321 247769321 C T OR2G3 Missense_Mutation p.A145V 0.35 tolerated(0.26) benign(0.35) TCGA-D5-6530-01 1 248436658 248436658 G A OR2T33 Silent p.D153D 0.30 TCGA-D5-6530-01 1 25718600 25718600 G A RHCE Silent p.Y173Y 0.37 TCGA-D5-6530-01 1 26073193 26073193 C T MAN1C1 Silent p.L224L 0.34 TCGA-D5-6530-01 1 26359751 26359751 T C EXTL1 Missense_Mutation p.I488T 0.32 deleterious(0) probably_damaging(0.92) TCGA-D5-6530-01 1 26392854 26392854 G A TRIM63 Silent p.R79R 0.34 TCGA-D5-6530-01 1 26570747 26570747 G A CEP85 Missense_Mutation p.C49Y 0.35 deleterious(0.03) probably_damaging(0.958) TCGA-D5-6530-01 1 26650761 26650761 C - AIM1L Frame_Shift_Del p.G666Dfs*12 0.28 TCGA-D5-6530-01 1 27177674 27177674 A G ZDHHC18 Silent p.S296S 0.36 TCGA-D5-6530-01 1 28527765 28527765 A G DNAJC8 Silent p.R252R 0.33 TCGA-D5-6530-01 1 28599271 28599271 C - SESN2 Frame_Shift_Del p.P241Qfs*6 0.26 TCGA-D5-6530-01 1 29030773 29030773 A T GMEB1 Missense_Mutation p.Q277L 0.41 deleterious(0.03) probably_damaging(0.953) TCGA-D5-6530-01 1 29609216 29609216 C T PTPRU Missense_Mutation p.R633W 0.46 deleterious(0) possibly_damaging(0.772) TCGA-D5-6530-01 1 31899504 31899506 TCT - SERINC2 In_Frame_Del p.F217del 0.33 TCGA-D5-6530-01 1 32688216 32688216 T G EIF3I Silent p.T27T 0.35 TCGA-D5-6530-01 1 33145279 33145279 C T RBBP4 Silent p.S417S 0.35 TCGA-D5-6530-01 1 3552559 3552559 A G WRAP73 Silent p.I184I 0.25 TCGA-D5-6530-01 1 35926017 35926018 - T KIAA0319L Frame_Shift_Ins p.I439Nfs*10 0.24 TCGA-D5-6530-01 1 36437829 36437829 A G AGO3 Missense_Mutation p.M173V 0.35 tolerated(0.05) benign(0.118) TCGA-D5-6530-01 1 38261363 38261363 G - MANEAL Intron 0.25 TCGA-D5-6530-01 1 38465080 38465080 C T FHL3 Missense_Mutation p.S2N 0.33 tolerated(0.17) benign(0.346) TCGA-D5-6530-01 1 39549924 39549924 C T MACF1 Missense_Mutation p.R12W 0.36 unknown(0) TCGA-D5-6530-01 1 39696860 39696860 G A MACF1 Missense_Mutation p.R76Q 0.40 possibly_damaging(0.692) TCGA-D5-6530-01 1 39797853 39797853 G A MACF1 Intron 0.34 TCGA-D5-6530-01 1 40981592 40981592 T C EXO5 3'UTR 0.29 TCGA-D5-6530-01 1 41283927 41283927 G A KCNQ4 Missense_Mutation p.R166H 0.32 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 1 41285096 41285096 C T KCNQ4 Silent p.D262D 0.38 TCGA-D5-6530-01 1 41494263 41494263 C T SCMH1 Missense_Mutation p.R617H 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 1 41512205 41512205 G A SCMH1 Missense_Mutation p.R448C 0.33 deleterious(0) possibly_damaging(0.614) TCGA-D5-6530-01 1 42048954 42048954 G A HIVEP3 Silent p.Y505Y 0.36 TCGA-D5-6530-01 1 43392779 43392779 C - SLC2A1 Frame_Shift_Del p.G471Efs*37 0.26 TCGA-D5-6530-01 1 44132129 44132129 T C KDM4A Missense_Mutation p.F227S 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6530-01 1 44687294 44687294 G A ERI3 Missense_Mutation p.A317V 0.35 tolerated(0.09) possibly_damaging(0.503) TCGA-D5-6530-01 1 45224911 45224911 C T KIF2C Missense_Mutation p.R420C 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 1 45250411 45250411 G - BEST4 Frame_Shift_Del p.A347Lfs*38 0.30 TCGA-D5-6530-01 1 46082306 46082306 T C NASP Silent p.S696S 0.40 TCGA-D5-6530-01 1 46685634 46685634 C T LURAP1 Silent p.S154S 0.33 TCGA-D5-6530-01 1 46752129 46752129 A - LRRC41 Frame_Shift_Del p.S134Pfs*116 0.26 TCGA-D5-6530-01 1 52385689 52385689 C T RAB3B Silent p.S190S 0.28 TCGA-D5-6530-01 1 52530571 52530571 A - BTF3L4 Frame_Shift_Del p.K45Nfs*4 0.24 TCGA-D5-6530-01 1 52838950 52838950 C T ORC1 Missense_Mutation p.R830H 0.38 deleterious(0.01) possibly_damaging(0.734) TCGA-D5-6530-01 1 52940630 52940630 G T ZCCHC11 Silent p.T867T 0.35 TCGA-D5-6530-01 1 53287248 53287248 C T ZYG11B Missense_Mutation p.R728C 0.35 deleterious(0.03) possibly_damaging(0.556) TCGA-D5-6530-01 1 54433572 54433572 G A LRRC42 Missense_Mutation p.C416Y 0.31 tolerated(0.29) possibly_damaging(0.73) TCGA-D5-6530-01 1 54684042 54684042 T C MRPL37 3'UTR 0.37 TCGA-D5-6530-01 1 55075099 55075099 G - FAM151A Frame_Shift_Del p.R534Gfs*18 0.27 TCGA-D5-6530-01 1 60466804 60466804 G A C1orf87 Missense_Mutation p.A406V 0.34 tolerated(0.15) possibly_damaging(0.714) TCGA-D5-6530-01 1 6202500 6202500 C T CHD5 Missense_Mutation p.V737M 0.35 deleterious(0) probably_damaging(0.993) TCGA-D5-6530-01 1 68151720 68151720 G - GADD45A Frame_Shift_Del p.D21Mfs*11 0.33 TCGA-D5-6530-01 1 70144063 70144063 G T LRRC7 Splice_Site p.X1_splice 0.36 TCGA-D5-6530-01 1 70504752 70504752 C T LRRC7 Missense_Mutation p.A1044V 0.42 deleterious(0.03) benign(0.285) TCGA-D5-6530-01 1 75704291 75704291 G C SLC44A5 Missense_Mutation p.T188S 0.38 tolerated(0.39) benign(0.022) TCGA-D5-6530-01 1 7723573 7723573 C T CAMTA1 Silent p.S322S 0.16 TCGA-D5-6530-01 1 77334228 77334228 G A ST6GALNAC5 Missense_Mutation p.S21N 0.36 possibly_damaging(0.907) TCGA-D5-6530-01 1 7839805 7839805 A T VAMP3 3'UTR 0.42 TCGA-D5-6530-01 1 79121137 79121137 G A IFI44 Missense_Mutation p.G261S 0.41 deleterious(0) probably_damaging(0.989) TCGA-D5-6530-01 1 8074253 8074253 A G ERRFI1 Missense_Mutation p.S136P 0.30 tolerated_low_confidence(0.35) benign(0.003) TCGA-D5-6530-01 1 87029432 87029432 A - CLCA4 Frame_Shift_Del p.I182Sfs*56 0.39 TCGA-D5-6530-01 1 89271442 89271442 T - PKN2 Intron 0.27 TCGA-D5-6530-01 1 89848221 89848221 A G GBP6 Splice_Site p.X385_splice 0.36 TCGA-D5-6530-01 1 89848285 89848285 C T GBP6 Silent p.Y405Y 0.38 TCGA-D5-6530-01 1 9082981 9082981 C T SLC2A7 Missense_Mutation p.G103S 0.30 deleterious(0.03) probably_damaging(0.918) TCGA-D5-6530-01 1 94480241 94480241 G A ABCA4 Missense_Mutation p.A1773V 0.26 deleterious(0) possibly_damaging(0.904) TCGA-D5-6530-01 20 17602359 17602359 C T RRBP1 Silent p.P667P 0.33 TCGA-D5-6530-01 20 17602560 17602561 - T RRBP1 Frame_Shift_Ins p.A628Gfs*69 0.35 TCGA-D5-6530-01 20 18022282 18022282 C T OVOL2 Missense_Mutation p.R136H 0.31 deleterious(0) probably_damaging(0.995) TCGA-D5-6530-01 20 23065347 23065347 G A CD93 Missense_Mutation p.P495S 0.29 tolerated(0.23) benign(0.009) TCGA-D5-6530-01 20 2641197 2641197 G T IDH3B Silent p.R191R 0.36 TCGA-D5-6530-01 20 33345500 33345500 C T NCOA6 Missense_Mutation p.G351S 0.22 benign(0.002) TCGA-D5-6530-01 20 33588853 33588855 GAA - MYH7B In_Frame_Del p.K1833del 0.40 TCGA-D5-6530-01 20 33722573 33722573 G A EDEM2 Missense_Mutation p.R224C 0.32 deleterious(0) possibly_damaging(0.652) TCGA-D5-6530-01 20 33934981 33934981 C T UQCC1 Missense_Mutation p.G187S 0.35 tolerated(0.27) benign(0.055) TCGA-D5-6530-01 20 3541511 3541511 C A ATRN Missense_Mutation p.P469H 0.35 deleterious(0) probably_damaging(0.971) TCGA-D5-6530-01 20 36845867 36845867 G A KIAA1755 Missense_Mutation p.R897C 0.39 deleterious(0.03) benign(0.091) TCGA-D5-6530-01 20 37518278 37518279 - A PPP1R16B Frame_Shift_Ins p.N98Kfs*2 0.29 TCGA-D5-6530-01 20 42088682 42088682 C T SRSF6 Nonsense_Mutation p.R131* 0.33 TCGA-D5-6530-01 20 42194861 42194861 C A SGK2 5'UTR 0.34 TCGA-D5-6530-01 20 44037246 44037246 C T DBNDD2 Missense_Mutation p.P149S 0.43 deleterious(0.03) probably_damaging(0.945) TCGA-D5-6530-01 20 45130766 45130766 G T ZNF334 Silent p.P404P 0.37 TCGA-D5-6530-01 20 50400935 50400935 C T SALL4 Missense_Mutation p.A1011T 0.16 tolerated(0.92) benign(0.001) TCGA-D5-6530-01 20 55949691 55949691 A G RAE1 Missense_Mutation p.H285R 0.32 deleterious(0.02) benign(0.105) TCGA-D5-6530-01 20 56190053 56190053 G A ZBP1 Missense_Mutation p.A131V 0.33 deleterious(0.01) benign(0.438) TCGA-D5-6530-01 20 57268871 57268871 G A NPEPL1 Missense_Mutation p.A77T 0.36 deleterious(0.02) possibly_damaging(0.689) TCGA-D5-6530-01 20 58467696 58467696 C T SYCP2 Nonsense_Mutation p.W618* 0.04 TCGA-D5-6530-01 20 60293886 60293886 C T RP11-429E11.3 Missense_Mutation p.R114H 0.31 possibly_damaging(0.711) TCGA-D5-6530-01 20 61457595 61457595 C - COL9A3 Frame_Shift_Del p.P243Lfs*290 0.40 TCGA-D5-6530-01 20 61536812 61536812 C T DIDO1 Intron 0.31 TCGA-D5-6530-01 20 62194305 62194305 G A HELZ2 Missense_Mutation p.A1957V 0.36 deleterious(0.02) benign(0.191) TCGA-D5-6530-01 20 62223389 62223389 G A GMEB2 Missense_Mutation p.A313V 0.32 tolerated(0.3) benign(0.063) TCGA-D5-6530-01 20 62577899 62577899 G - UCKL1 Frame_Shift_Del p.L71Cfs*47 0.29 TCGA-D5-6530-01 20 62597978 62597978 G A ZNF512B Missense_Mutation p.R184W 0.34 tolerated_low_confidence(0.07) probably_damaging(0.918) TCGA-D5-6530-01 21 15554119 15554119 C T LIPI Silent p.T222T 0.31 TCGA-D5-6530-01 21 30341860 30341860 A - LTN1 Frame_Shift_Del p.F459Lfs*7 0.14 TCGA-D5-6530-01 21 34926588 34926588 C A SON Missense_Mutation p.P1684H 0.39 possibly_damaging(0.893) TCGA-D5-6530-01 21 35147060 35147060 C T ITSN1 Nonsense_Mutation p.R445* 0.34 TCGA-D5-6530-01 21 35476323 35476324 - C SLC5A3 3'UTR 0.32 TCGA-D5-6530-01 21 37597929 37597929 C T DOPEY2 Silent p.C479C 0.39 TCGA-D5-6530-01 21 39795335 39795335 C T ERG Missense_Mutation p.A136T 0.30 deleterious(0.03) probably_damaging(0.95) TCGA-D5-6530-01 21 40665816 40665817 - T BRWD1 Frame_Shift_Ins p.I251Nfs*3 0.26 TCGA-D5-6530-01 21 42694972 42694972 G T FAM3B Missense_Mutation p.G48W 0.34 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 21 43164057 43164057 C T RIPK4 Missense_Mutation p.E394K 0.29 tolerated(0.08) possibly_damaging(0.716) TCGA-D5-6530-01 21 43838647 43838647 G A UBASH3A Silent p.T325T 0.38 TCGA-D5-6530-01 21 45523417 45523417 G A TRAPPC10 3'UTR 0.33 TCGA-D5-6530-01 21 46000207 46000207 G - KRTAP10-5 Frame_Shift_Del p.C84Afs*285 0.34 TCGA-D5-6530-01 21 46207992 46207992 G A UBE2G2 Missense_Mutation p.P21L 0.36 tolerated(0.3) probably_damaging(0.949) TCGA-D5-6530-01 21 46320353 46320353 A G ITGB2 Missense_Mutation p.V260A 0.31 deleterious(0) probably_damaging(0.965) TCGA-D5-6530-01 21 46689917 46689917 C T POFUT2 Silent p.A283A 0.36 TCGA-D5-6530-01 22 17308884 17308884 T A HSFY1P1 RNA 0.28 TCGA-D5-6530-01 22 18077351 18077351 G T ATP6V1E1 Missense_Mutation p.R188S 0.05 tolerated(0.11) benign(0.03) TCGA-D5-6530-01 22 19363185 19363185 G T HIRA Missense_Mutation p.L582M 0.36 tolerated(0.11) benign(0.098) TCGA-D5-6530-01 22 19885622 19885622 G A TXNRD2 Silent p.T238T 0.36 TCGA-D5-6530-01 22 20761159 20761159 C T ZNF74 Silent p.D612D 0.31 TCGA-D5-6530-01 22 20940992 20940992 C A MED15 3'UTR 0.38 TCGA-D5-6530-01 22 22730762 22730762 G A IGLV5-45 Missense_Mutation p.R86H 0.31 tolerated(0.12) benign(0.054) TCGA-D5-6530-01 22 23615298 23615298 C T BCR Missense_Mutation p.T651M 0.33 tolerated(0.06) probably_damaging(0.981) TCGA-D5-6530-01 22 23915513 23915513 G A IGLL1 Silent p.C194C 0.38 TCGA-D5-6530-01 22 24581215 24581215 C T SUSD2 Silent p.D312D 0.40 TCGA-D5-6530-01 22 25294032 25294032 G A SGSM1 Missense_Mutation p.G761S 0.24 tolerated(0.12) benign(0.217) TCGA-D5-6530-01 22 26176143 26176143 G A MYO18B Missense_Mutation p.R730H 0.31 deleterious(0) probably_damaging(0.988) TCGA-D5-6530-01 22 26829563 26829563 C - ASPHD2 5'UTR 0.32 TCGA-D5-6530-01 22 31487001 31487001 G A SMTN Missense_Mutation p.R331Q 0.32 tolerated(0.06) benign(0.072) TCGA-D5-6530-01 22 37271987 37271987 C A NCF4 Missense_Mutation p.P307H 0.36 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-D5-6530-01 22 37273871 37273871 C T NCF4 3'UTR 0.29 TCGA-D5-6530-01 22 37462912 37462912 C T TMPRSS6 Missense_Mutation p.R744H 0.30 deleterious(0) probably_damaging(0.983) TCGA-D5-6530-01 22 38469027 38469027 G A PICK1 Silent p.T237T 0.04 TCGA-D5-6530-01 22 38692559 38692559 G A CSNK1E Intron 0.06 TCGA-D5-6530-01 22 39885554 39885554 C - MGAT3 3'UTR 0.29 TCGA-D5-6530-01 22 40364153 40364153 C - GRAP2 Frame_Shift_Del p.P191Rfs*49 0.30 TCGA-D5-6530-01 22 40805340 40805340 G A SGSM3 Missense_Mutation p.R692H 0.44 deleterious(0.03) benign(0.052) TCGA-D5-6530-01 22 40816542 40816542 G - MKL1 Frame_Shift_Del p.P307Qfs*30 0.31 TCGA-D5-6530-01 22 41195058 41195058 A - SLC25A17 Frame_Shift_Del p.L30Wfs*42 0.27 TCGA-D5-6530-01 22 41926887 41926887 T C POLR3H Missense_Mutation p.E122G 0.34 deleterious(0.02) benign(0.098) TCGA-D5-6530-01 22 42049607 42049607 C - XRCC6 Frame_Shift_Del p.R403Afs*25 0.25 TCGA-D5-6530-01 22 42610948 42610948 G - TCF20 Frame_Shift_Del p.Q122Rfs*62 0.27 TCGA-D5-6530-01 22 45601565 45601565 C T KIAA0930 Silent p.A125A 0.30 TCGA-D5-6530-01 22 45724288 45724288 G A FAM118A Intron 0.30 TCGA-D5-6530-01 22 45749950 45749950 T - SMC1B Frame_Shift_Del p.R1061Gfs*91 0.29 TCGA-D5-6530-01 22 46653484 46653484 C A PKDREJ Missense_Mutation p.W1912C 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 22 46931473 46931473 A G CELSR1 Missense_Mutation p.L532P 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 22 47059927 47059927 C T GRAMD4 Silent p.R210R 0.34 TCGA-D5-6530-01 22 47073204 47073205 - C GRAMD4 3'UTR 0.29 TCGA-D5-6530-01 22 50018191 50018191 G A C22orf34 Silent p.N91N 0.38 TCGA-D5-6530-01 22 50599806 50599806 G - MOV10L1 Frame_Shift_Del p.V1190Wfs*96 0.27 TCGA-D5-6530-01 22 50636305 50636305 C T TRABD Missense_Mutation p.A242V 0.32 deleterious(0.01) possibly_damaging(0.542) TCGA-D5-6530-01 2 100210239 100210239 C T AFF3 Silent p.R653R 0.40 TCGA-D5-6530-01 2 102480499 102480499 G A MAP4K4 Intron 0.38 TCGA-D5-6530-01 2 102804347 102804347 G A IL1RL2 Missense_Mutation p.C7Y 0.32 deleterious(0.01) possibly_damaging(0.505) TCGA-D5-6530-01 2 107450580 107450580 T C ST6GAL2 Silent p.R322R 0.34 TCGA-D5-6530-01 2 107460158 107460158 C - ST6GAL2 Frame_Shift_Del p.P93Lfs*81 0.24 TCGA-D5-6530-01 2 108863685 108863685 A - SULT1C3 Frame_Shift_Del p.K14Sfs*10 0.30 TCGA-D5-6530-01 2 10937227 10937227 T - PDIA6 Frame_Shift_Del p.N109Tfs*16 0.25 TCGA-D5-6530-01 2 109539837 109539837 G - EDAR Frame_Shift_Del p.N144Tfs*45 0.31 TCGA-D5-6530-01 2 116283540 116283540 G A DPP10 Missense_Mutation p.V149I 0.32 tolerated(0.37) benign(0.001) TCGA-D5-6530-01 2 121036332 121036332 C T RALB Missense_Mutation p.T31M 0.36 deleterious(0.01) probably_damaging(0.912) TCGA-D5-6530-01 2 122488496 122488496 T - NIFK Frame_Shift_Del p.G180Efs*9 0.25 TCGA-D5-6530-01 2 125204470 125204470 T G CNTNAP5 Missense_Mutation p.F292V 0.33 tolerated(0.28) benign(0.31) TCGA-D5-6530-01 2 125261952 125261952 C T CNTNAP5 Silent p.P381P 0.33 TCGA-D5-6530-01 2 130902496 130902496 T C CCDC74B Missense_Mutation p.Q25R 0.31 tolerated(0.86) benign(0.3) TCGA-D5-6530-01 2 130939427 130939428 CC - SMPD4 5'UTR 0.33 TCGA-D5-6530-01 2 132287309 132287309 C T CCDC74A Intron 0.33 TCGA-D5-6530-01 2 1481060 1481060 G A TPO Missense_Mutation p.R341Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-D5-6530-01 2 152473960 152473960 T C NEB Missense_Mutation p.D3700G 0.33 possibly_damaging(0.714) TCGA-D5-6530-01 2 152541344 152541344 G - NEB Frame_Shift_Del p.P928Lfs*29 0.28 TCGA-D5-6530-01 2 152955525 152955525 T A CACNB4 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) benign(0.354) TCGA-D5-6530-01 2 15467969 15467969 T C NBAS Missense_Mutation p.Q1496R 0.36 tolerated(0.41) benign(0.003) TCGA-D5-6530-01 2 158622630 158622630 G A ACVR1 Missense_Mutation p.S290L 0.38 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 2 160080783 160080783 T C TANC1 Missense_Mutation p.V1240A 0.31 tolerated(0.06) probably_damaging(0.976) TCGA-D5-6530-01 2 1652982 1652982 C T PXDN Missense_Mutation p.C857Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 2 170177380 170177380 G A LRP2 Missense_Mutation p.H32Y 0.32 benign(0.158) TCGA-D5-6530-01 2 174131352 174131352 G T MLTK Missense_Mutation p.E759D 0.26 tolerated_low_confidence(0.14) benign(0.005) TCGA-D5-6530-01 2 175213871 175213871 T - CIR1 Frame_Shift_Del p.K236Rfs*104 0.26 TCGA-D5-6530-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.26 TCGA-D5-6530-01 2 179442453 179442453 G T TTN Silent p.A22900A 0.30 TCGA-D5-6530-01 2 179585718 179585718 G A TTN Silent p.S7676S 0.29 TCGA-D5-6530-01 2 179585875 179585875 T C TTN Missense_Mutation p.E7624G 0.37 TCGA-D5-6530-01 2 179587250 179587251 - A TTN Frame_Shift_Ins p.A7422Cfs*8 0.23 TCGA-D5-6530-01 2 179647075 179647075 G A TTN Missense_Mutation p.P1082S 0.31 TCGA-D5-6530-01 2 187359971 187359971 C T ZC3H15 Silent p.F29F 0.35 TCGA-D5-6530-01 2 190328642 190328642 C T WDR75 Silent p.G356G 0.33 TCGA-D5-6530-01 2 190430111 190430111 T C SLC40A1 Silent p.E243E 0.04 TCGA-D5-6530-01 2 191236041 191236041 A G INPP1 Silent p.G371G 0.40 TCGA-D5-6530-01 2 191818320 191818320 T G GLS Silent p.A560A 0.36 TCGA-D5-6530-01 2 193049133 193049133 G A TMEFF2 Missense_Mutation p.A120V 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6530-01 2 196545573 196545573 T C SLC39A10 Silent p.P269P 0.37 TCGA-D5-6530-01 2 200790217 200790217 G A C2orf69 Missense_Mutation p.A256T 0.30 tolerated(0.11) benign(0.255) TCGA-D5-6530-01 2 206165427 206165427 A G PARD3B Missense_Mutation p.K725E 0.29 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 2 207431945 207431945 A G ADAM23 Splice_Site p.X465_splice 0.34 TCGA-D5-6530-01 2 209007563 209007563 G A CRYGB Silent p.D109D 0.39 TCGA-D5-6530-01 2 21230946 21230946 C - APOB Frame_Shift_Del p.A2932Pfs*19 0.26 TCGA-D5-6530-01 2 212989496 212989496 C G ERBB4 Missense_Mutation p.R72P 0.38 tolerated(0.19) possibly_damaging(0.859) TCGA-D5-6530-01 2 219001835 219001835 A - CXCR2 3'UTR 0.42 TCGA-D5-6530-01 2 219140175 219140175 G T TMBIM1 3'UTR 0.43 TCGA-D5-6530-01 2 219922215 219922215 C T IHH Missense_Mutation p.A173T 0.38 deleterious(0.01) benign(0.158) TCGA-D5-6530-01 2 220147938 220147938 C T DNAJB2 Missense_Mutation p.R177C 0.05 deleterious(0) possibly_damaging(0.487) TCGA-D5-6530-01 2 220163766 220163766 T C PTPRN Intron 0.33 TCGA-D5-6530-01 2 220337025 220337025 C - SPEG Frame_Shift_Del p.R1307Gfs*12 0.26 TCGA-D5-6530-01 2 220430077 220430077 T C OBSL1 Missense_Mutation p.K765R 0.37 deleterious(0.05) possibly_damaging(0.574) TCGA-D5-6530-01 2 225266581 225266581 G A FAM124B 5'UTR 0.36 TCGA-D5-6530-01 2 226447504 226447504 C T NYAP2 Silent p.Y457Y 0.38 TCGA-D5-6530-01 2 228560664 228560664 C T SLC19A3 Silent p.A371A 0.31 TCGA-D5-6530-01 2 233407647 233407647 G A CHRNG Silent p.A220A 0.30 TCGA-D5-6530-01 2 234627573 234627573 C T UGT1A4 Missense_Mutation p.T36I 0.39 tolerated(0.28) benign(0.003) TCGA-D5-6530-01 2 234738376 234738376 C - MROH2A Frame_Shift_Del p.L1521Sfs*47 0.29 TCGA-D5-6530-01 2 236877177 236877177 C - AGAP1 Frame_Shift_Del p.S521Pfs*83 0.41 TCGA-D5-6530-01 2 237395504 237395505 - T IQCA1 Frame_Shift_Ins p.L230Tfs*18 0.13 TCGA-D5-6530-01 2 238820348 238820348 G A RAMP1 Missense_Mutation p.V124M 0.35 tolerated(0.1) benign(0.218) TCGA-D5-6530-01 2 240984810 240984810 C T OR6B3 Missense_Mutation p.R227H 0.03 tolerated(0.43) benign(0.021) TCGA-D5-6530-01 2 241439492 241439492 G A ANKMY1 Missense_Mutation p.R808C 0.33 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 2 241683429 241683429 G A KIF1A Missense_Mutation p.P1172S 0.27 deleterious(0.01) probably_damaging(0.966) TCGA-D5-6530-01 2 242169021 242169021 G A HDLBP Nonsense_Mutation p.R1268* 0.17 TCGA-D5-6530-01 2 242438119 242438119 G A STK25 Silent p.I284I 0.31 TCGA-D5-6530-01 2 242662423 242662423 C T ING5 Silent p.N184N 0.34 TCGA-D5-6530-01 2 242694958 242694958 C T D2HGDH Intron 0.31 TCGA-D5-6530-01 2 243056802 243056802 C T AC093642.5 RNA 0.16 TCGA-D5-6530-01 2 24345340 24345340 G A PFN4 Silent p.A22A 0.35 TCGA-D5-6530-01 2 27565718 27565718 G A GTF3C2 Nonsense_Mutation p.R182* 0.36 TCGA-D5-6530-01 2 28800994 28800994 G A PLB1 Missense_Mutation p.R485K 0.35 tolerated(0.12) benign(0.074) TCGA-D5-6530-01 2 29294162 29294162 G - C2orf71 Frame_Shift_Del p.P989Lfs*46 0.39 TCGA-D5-6530-01 2 29368177 29368178 - A CLIP4 Frame_Shift_Ins p.N324Kfs*2 0.27 TCGA-D5-6530-01 2 30143012 30143012 C T ALK Missense_Mutation p.E172K 0.32 deleterious_low_confidence(0.01) benign(0.137) TCGA-D5-6530-01 2 33442707 33442708 - C LTBP1 Frame_Shift_Ins p.K599Qfs*19 0.29 TCGA-D5-6530-01 2 36970375 36970376 GT - VIT Frame_Shift_Del p.C86Wfs*10 0.28 TCGA-D5-6530-01 2 37247856 37247856 G A HEATR5B Missense_Mutation p.A1326V 0.04 deleterious(0.01) possibly_damaging(0.594) TCGA-D5-6530-01 2 39108684 39108685 - G MORN2 Frame_Shift_Ins p.A36Gfs*9 0.24 TCGA-D5-6530-01 2 54871646 54871646 G A SPTBN1 Missense_Mutation p.G1398S 0.04 tolerated(0.44) benign(0.011) TCGA-D5-6530-01 2 54885098 54885098 A C SPTBN1 Missense_Mutation p.E2053A 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6530-01 2 55561755 55561755 T - CCDC88A Frame_Shift_Del p.E735Sfs*10 0.25 TCGA-D5-6530-01 2 55914796 55914796 C T PNPT1 Missense_Mutation p.G69D 0.34 deleterious(0) probably_damaging(0.981) TCGA-D5-6530-01 2 5834279 5834279 A G SOX11 3'UTR 0.38 TCGA-D5-6530-01 2 5839082 5839082 G T SOX11 3'UTR 0.20 TCGA-D5-6530-01 2 5840802 5840802 T - SOX11 3'UTR 0.11 TCGA-D5-6530-01 2 63272171 63272171 G A EHBP1 Intron 0.36 TCGA-D5-6530-01 2 69046383 69046383 C A ARHGAP25 Silent p.R378R 0.30 TCGA-D5-6530-01 2 70528100 70528100 G A FAM136A Missense_Mutation p.R34W 0.37 tolerated(0.14) benign(0.032) TCGA-D5-6530-01 2 71892310 71892310 G A DYSF Nonsense_Mutation p.W1731* 0.34 TCGA-D5-6530-01 2 72362449 72362449 C T CYP26B1 Missense_Mutation p.E177K 0.33 tolerated(0.38) benign(0.327) TCGA-D5-6530-01 2 72740318 72740318 A G EXOC6B Silent p.I370I 0.34 TCGA-D5-6530-01 2 74089560 74089560 T - STAMBP 3'UTR 0.39 TCGA-D5-6530-01 2 74328027 74328027 A G TET3 Missense_Mutation p.K1236R 0.31 tolerated(0.4) benign(0.006) TCGA-D5-6530-01 2 74733940 74733940 C T PCGF1 Missense_Mutation p.E91K 0.38 tolerated(0.07) possibly_damaging(0.53) TCGA-D5-6530-01 2 75081444 75081444 C T HK2 Missense_Mutation p.R30C 0.37 tolerated(0.06) possibly_damaging(0.815) TCGA-D5-6530-01 2 75874011 75874011 C - MRPL19 Frame_Shift_Del p.P28Rfs*49 0.33 TCGA-D5-6530-01 2 86333065 86333065 G - POLR1A 5'UTR 0.31 TCGA-D5-6530-01 2 97357664 97357664 C - FER1L5 RNA 0.31 TCGA-D5-6530-01 2 97533651 97533651 G A SEMA4C 5'UTR 0.34 TCGA-D5-6530-01 2 99294914 99294914 G A MGAT4A Nonsense_Mutation p.R39* 0.38 TCGA-D5-6530-01 2 99448911 99448911 C T KIAA1211L Missense_Mutation p.R147Q 0.30 deleterious(0.02) benign(0.417) TCGA-D5-6530-01 2 99688288 99688288 G A TSGA10 Missense_Mutation p.R330C 0.32 deleterious(0.04) benign(0.092) TCGA-D5-6530-01 3 100497130 100497130 G A ABI3BP Missense_Mutation p.A733V 0.39 deleterious(0.04) benign(0.015) TCGA-D5-6530-01 3 101044641 101044641 T C SENP7 3'UTR 0.50 TCGA-D5-6530-01 3 10442664 10442664 C T ATP2B2 Missense_Mutation p.V252M 0.06 tolerated(0.23) possibly_damaging(0.852) TCGA-D5-6530-01 3 105588200 105588200 G T CBLB 5'Flank 0.34 TCGA-D5-6530-01 3 108100366 108100366 C T MYH15 3'UTR 0.27 TCGA-D5-6530-01 3 11078685 11078685 C - SLC6A1 3'UTR 0.31 TCGA-D5-6530-01 3 111261000 111261000 T - CD96 5'UTR 0.32 TCGA-D5-6530-01 3 111357003 111357003 G A CD96 Missense_Mutation p.V505I 0.31 tolerated(1) benign(0.001) TCGA-D5-6530-01 3 111700647 111700647 G A ABHD10 Silent p.T53T 0.33 TCGA-D5-6530-01 3 11304189 11304190 - G HRH1 3'UTR 0.27 TCGA-D5-6530-01 3 113118758 113118758 G A WDR52 Nonsense_Mutation p.R522* 0.30 TCGA-D5-6530-01 3 113187080 113187080 C T SPICE1 Missense_Mutation p.R354H 0.35 deleterious(0.04) benign(0.424) TCGA-D5-6530-01 3 113373687 113373688 - AC KIAA2018 3'UTR 0.36 TCGA-D5-6530-01 3 113672739 113672739 C A ZDHHC23 Silent p.T118T 0.35 TCGA-D5-6530-01 3 119367363 119367363 C T POPDC2 Silent p.K251K 0.33 TCGA-D5-6530-01 3 120050011 120050012 - T LRRC58 3'UTR 0.29 TCGA-D5-6530-01 3 120500291 120500291 C T GTF2E1 Missense_Mutation p.R432C 0.37 deleterious(0) benign(0.032) TCGA-D5-6530-01 3 121126355 121126355 G A STXBP5L Silent p.T975T 0.30 TCGA-D5-6530-01 3 12187187 12187187 G A SYN2 RNA 0.38 TCGA-D5-6530-01 3 124397079 124397079 G A KALRN Silent p.A715A 0.32 TCGA-D5-6530-01 3 124930149 124930149 G A SLC12A8 Silent p.A15A 0.07 TCGA-D5-6530-01 3 126261310 126261310 G A CHST13 Silent p.A305A 0.42 TCGA-D5-6530-01 3 126741635 126741635 A G PLXNA1 Missense_Mutation p.T1446A 0.33 tolerated(0.31) benign(0.111) TCGA-D5-6530-01 3 127398956 127398956 C T ABTB1 Silent p.R386R 0.40 TCGA-D5-6530-01 3 129275999 129275999 T C PLXND1 Missense_Mutation p.Y1838C 0.36 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 3 130281935 130281935 T - COL6A6 Frame_Shift_Del p.L31Wfs*16 0.27 TCGA-D5-6530-01 3 132320115 132320115 G A ACKR4 Missense_Mutation p.A292T 0.18 deleterious(0) probably_damaging(0.996) TCGA-D5-6530-01 3 133114879 133114879 T A TMEM108 3'UTR 0.10 TCGA-D5-6530-01 3 133878164 133878164 G A RYK Silent p.Y544Y 0.39 TCGA-D5-6530-01 3 134266305 134266305 T C CEP63 Missense_Mutation p.L353P 0.34 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 3 134670340 134670340 G A EPHB1 Missense_Mutation p.R84H 0.31 deleterious(0.04) possibly_damaging(0.777) TCGA-D5-6530-01 3 13540015 13540015 G - HDAC11 Frame_Shift_Del p.K126Sfs*154 0.36 TCGA-D5-6530-01 3 137483707 137483707 C T SOX14 Silent p.A27A 0.35 TCGA-D5-6530-01 3 138383934 138383934 A T PIK3CB Silent p.A872A 0.03 TCGA-D5-6530-01 3 138478130 138478130 G A PIK3CB Missense_Mutation p.A19V 0.34 tolerated(0.07) benign(0.296) TCGA-D5-6530-01 3 138739095 138739095 C T PRR23B Missense_Mutation p.V137I 0.38 tolerated(0.24) benign(0.348) TCGA-D5-6530-01 3 140401955 140401955 C T TRIM42 Silent p.S331S 0.37 TCGA-D5-6530-01 3 141326548 141326548 A - RASA2 Frame_Shift_Del p.N656Tfs*21 0.28 TCGA-D5-6530-01 3 150398315 150398315 G A FAM194A Nonsense_Mutation p.Q351* 0.31 TCGA-D5-6530-01 3 151162844 151162844 C A IGSF10 Missense_Mutation p.R1642M 0.32 deleterious(0.02) possibly_damaging(0.885) TCGA-D5-6530-01 3 155199255 155199255 G A PLCH1 Silent p.G1528G 0.33 TCGA-D5-6530-01 3 156241630 156241633 GAAA - KCNAB1 Frame_Shift_Del p.R328Lfs*2 0.28 TCGA-D5-6530-01 3 156745977 156745977 G A LEKR1 Missense_Mutation p.R485Q 0.33 tolerated(0.34) benign(0) TCGA-D5-6530-01 3 158970555 158970555 G A IQCJ-SCHIP1 Silent p.K38K 0.31 TCGA-D5-6530-01 3 16344253 16344253 C T OXNAD1 Missense_Mutation p.T261M 0.25 deleterious(0.03) probably_damaging(0.96) TCGA-D5-6530-01 3 164906028 164906028 T G SLITRK3 Missense_Mutation p.E864A 0.37 tolerated_low_confidence(0.11) benign(0.039) TCGA-D5-6530-01 3 167405105 167405105 C A PDCD10 Splice_Site p.X159_splice 0.04 TCGA-D5-6530-01 3 169381319 169381319 C T MECOM 5'Flank 0.35 TCGA-D5-6530-01 3 17202725 17202725 G A TBC1D5 Silent p.C728C 0.38 TCGA-D5-6530-01 3 174951986 174951986 A T NAALADL2 Missense_Mutation p.T271S 0.36 tolerated(0.24) benign(0.039) TCGA-D5-6530-01 3 175293957 175293957 G T NAALADL2 Missense_Mutation p.E594D 0.32 tolerated(0.11) benign(0.2) TCGA-D5-6530-01 3 179052260 179052260 T - ZNF639 3'UTR 0.32 TCGA-D5-6530-01 3 182616525 182616525 C T ATP11B Nonsense_Mutation p.R1095* 0.32 TCGA-D5-6530-01 3 182841853 182841854 - C LAMP3 3'UTR 0.29 TCGA-D5-6530-01 3 182994665 182994665 G A MCF2L2 Silent p.P619P 0.34 TCGA-D5-6530-01 3 183017897 183017897 G - MCF2L2 Frame_Shift_Del p.R401Gfs*23 0.22 TCGA-D5-6530-01 3 183388867 183388867 G A KLHL24 Missense_Mutation p.V424I 0.34 tolerated(0.05) possibly_damaging(0.746) TCGA-D5-6530-01 3 184102457 184102457 T C CHRD Missense_Mutation p.C525R 0.38 deleterious(0) benign(0.03) TCGA-D5-6530-01 3 184102901 184102901 C A CHRD Missense_Mutation p.L565M 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 3 186959269 186959269 C A MASP1 Nonsense_Mutation p.E435* 0.36 TCGA-D5-6530-01 3 188327603 188327604 - C LPP Frame_Shift_Ins p.C364Lfs*29 0.28 TCGA-D5-6530-01 3 189507524 189507524 G - TP63 Intron 0.38 TCGA-D5-6530-01 3 190995934 190995934 T - UTS2B Frame_Shift_Del p.K43Nfs*13 0.27 TCGA-D5-6530-01 3 25470119 25470119 A - RARB 5'UTR 0.27 TCGA-D5-6530-01 3 25654019 25654019 A G TOP2B Missense_Mutation p.L1253P 0.37 tolerated(0.28) benign(0.306) TCGA-D5-6530-01 3 37038192 37038192 G A MLH1 Missense_Mutation p.G67R 0.73 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 3 37151060 37151060 G T LRRFIP2 Silent p.A189A 0.32 TCGA-D5-6530-01 3 40524149 40524149 T C ZNF619 Silent p.D123D 0.40 TCGA-D5-6530-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.70 deleterious(0) probably_damaging(0.939) TCGA-D5-6530-01 3 44310790 44310790 G - TOPAZ1 Frame_Shift_Del 0.28 TCGA-D5-6530-01 3 44635761 44635761 G T ZNF660 Nonsense_Mutation p.E26* 0.32 TCGA-D5-6530-01 3 46417157 46417157 G - CCR5 3'UTR 0.30 TCGA-D5-6530-01 3 46712542 46712542 G A ALS2CL Missense_Mutation p.H932Y 0.18 deleterious(0.04) benign(0.248) TCGA-D5-6530-01 3 46723050 46723050 T G ALS2CL Missense_Mutation p.K405T 0.41 tolerated(0.1) benign(0.003) TCGA-D5-6530-01 3 48282651 48282651 T C ZNF589 5'UTR 0.23 TCGA-D5-6530-01 3 48450804 48450804 G A PLXNB1 Missense_Mutation p.A2007V 0.34 deleterious(0) probably_damaging(0.993) TCGA-D5-6530-01 3 48717522 48717522 G A NCKIPSD Silent p.R411R 0.33 TCGA-D5-6530-01 3 48727106 48727106 C T IP6K2 Silent p.V215V 0.33 TCGA-D5-6530-01 3 4887939 4887939 T - ITPR1 3'UTR 0.25 TCGA-D5-6530-01 3 49052290 49052290 C A WDR6 Missense_Mutation p.H1009N 0.38 deleterious(0) possibly_damaging(0.894) TCGA-D5-6530-01 3 49094372 49094372 G A QRICH1 Nonsense_Mutation p.Q421* 0.37 TCGA-D5-6530-01 3 49147948 49147948 C T USP19 Missense_Mutation p.G1261D 0.34 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 3 49160436 49160436 C - LAMB2 Frame_Shift_Del p.G1425Vfs*27 0.33 TCGA-D5-6530-01 3 49161272 49161272 C T LAMB2 Missense_Mutation p.S1229N 0.34 tolerated(0.36) benign(0.027) TCGA-D5-6530-01 3 49294240 49294240 G - CCDC36 Frame_Shift_Del p.D440Tfs*18 0.27 TCGA-D5-6530-01 3 49699621 49699621 C A BSN Missense_Mutation p.A3448E 0.07 unknown(0) TCGA-D5-6530-01 3 51431015 51431015 A - RBM15B Frame_Shift_Del p.N730Tfs*11 0.25 TCGA-D5-6530-01 3 52282664 52282664 G A PPM1M Missense_Mutation p.R97H 0.35 tolerated(0.05) benign(0.002) TCGA-D5-6530-01 3 52420286 52420286 C A DNAH1 Missense_Mutation p.D2912E 0.31 benign(0.14) TCGA-D5-6530-01 3 52637689 52637689 C T PBRM1 Missense_Mutation p.R876H 0.29 deleterious(0) probably_damaging(0.972) TCGA-D5-6530-01 3 52728964 52728964 C T GLT8D1 Missense_Mutation p.R338K 0.35 tolerated(0.24) probably_damaging(0.964) TCGA-D5-6530-01 3 52867731 52867731 C T TMEM110-MUSTN1 Missense_Mutation p.R305H 0.37 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D5-6530-01 3 52962296 52962296 C T SFMBT1 Missense_Mutation p.R320Q 0.28 tolerated(0.42) benign(0.004) TCGA-D5-6530-01 3 53699823 53699823 T - CACNA1D Frame_Shift_Del p.F303Lfs*7 0.23 TCGA-D5-6530-01 3 57233858 57233858 T C HESX1 Missense_Mutation p.D30G 0.34 tolerated(0.09) possibly_damaging(0.752) TCGA-D5-6530-01 3 68593863 68593863 A - FAM19A1 3'UTR 0.45 TCGA-D5-6530-01 3 69104477 69104477 A - UBA3 3'UTR 0.29 TCGA-D5-6530-01 3 75476969 75476969 G C FAM86DP RNA 0.38 TCGA-D5-6530-01 3 7620449 7620449 C A GRM7 Missense_Mutation p.P619H 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 3 97596606 97596606 G A CRYBG3 Missense_Mutation p.V242I 0.32 tolerated(0.38) benign(0) TCGA-D5-6530-01 3 9828759 9828759 C T TADA3 Silent p.Q247Q 0.34 TCGA-D5-6530-01 3 99513112 99513112 C T COL8A1 Missense_Mutation p.R123C 0.37 deleterious(0.04) unknown(0) TCGA-D5-6530-01 4 100126030 100126030 C A ADH6 Intron 0.36 TCGA-D5-6530-01 4 104074399 104074399 G A CENPE Silent p.G1014G 0.33 TCGA-D5-6530-01 4 115597356 115597356 G A UGT8 Missense_Mutation p.S513N 0.35 tolerated_low_confidence(0.32) benign(0.003) TCGA-D5-6530-01 4 118005467 118005467 C T TRAM1L1 Silent p.P361P 0.37 TCGA-D5-6530-01 4 123748486 123748486 C T FGF2 Missense_Mutation p.R186W 0.30 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 4 1246406 1246407 - T CTBP1 5'Flank 0.21 TCGA-D5-6530-01 4 125592127 125592127 C G ANKRD50 Missense_Mutation p.E769Q 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6530-01 4 126237931 126237931 G A FAT4 Missense_Mutation p.R122Q 0.35 probably_damaging(0.998) TCGA-D5-6530-01 4 126238582 126238582 C T FAT4 Missense_Mutation p.A339V 0.32 benign(0.438) TCGA-D5-6530-01 4 126242518 126242518 T C FAT4 Missense_Mutation p.I1651T 0.31 benign(0.342) TCGA-D5-6530-01 4 126411657 126411657 C A FAT4 Missense_Mutation p.D4560E 0.43 probably_damaging(0.985) TCGA-D5-6530-01 4 128605622 128605622 A G INTU Missense_Mutation p.M414V 0.37 deleterious(0.01) benign(0.343) TCGA-D5-6530-01 4 128741625 128741625 A - HSPA4L Frame_Shift_Del p.G575Efs*18 0.26 TCGA-D5-6530-01 4 129960243 129960243 C T SCLT1 Silent p.V81V 0.34 TCGA-D5-6530-01 4 1332320 1332320 G A MAEA Missense_Mutation p.R337H 0.37 deleterious(0) probably_damaging(0.982) TCGA-D5-6530-01 4 13485808 13485809 GG - RAB28 5'UTR 0.29 TCGA-D5-6530-01 4 135121911 135121911 G A PABPC4L Silent p.R146R 0.37 TCGA-D5-6530-01 4 13584277 13584277 T - BOD1L1 Frame_Shift_Del p.D2840Mfs*21 0.26 TCGA-D5-6530-01 4 138452788 138452788 A G PCDH18 Missense_Mutation p.V152A 0.36 tolerated(0.37) probably_damaging(0.957) TCGA-D5-6530-01 4 1389218 1389218 C T CRIPAK Missense_Mutation p.R307C 0.36 tolerated(0.18) benign(0.001) TCGA-D5-6530-01 4 139163207 139163207 A G SLC7A11 Missense_Mutation p.V6A 0.31 tolerated_low_confidence(0.63) benign(0.001) TCGA-D5-6530-01 4 140272687 140272687 G A NAA15 Silent p.K312K 0.31 TCGA-D5-6530-01 4 146059544 146059544 C T OTUD4 Missense_Mutation p.V730I 0.32 tolerated(0.7) possibly_damaging(0.832) TCGA-D5-6530-01 4 152577545 152577545 G A FAM160A1 Missense_Mutation p.V905I 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-D5-6530-01 4 153244156 153244156 C - FBXW7 Frame_Shift_Del p.S668Vfs*39 0.29 TCGA-D5-6530-01 4 153691623 153691624 - T TIGD4 Frame_Shift_Ins p.N178Kfs*4 0.21 TCGA-D5-6530-01 4 153897329 153897329 C T FHDC1 Silent p.S962S 0.16 TCGA-D5-6530-01 4 155665629 155665629 C T LRAT Silent p.L51L 0.43 TCGA-D5-6530-01 4 15689760 15689760 G A FAM200B Missense_Mutation p.R387H 0.34 deleterious(0.02) possibly_damaging(0.855) TCGA-D5-6530-01 4 15995613 15995613 A G PROM1 Silent p.N588N 0.35 TCGA-D5-6530-01 4 162459343 162459343 A - FSTL5 Frame_Shift_Del p.F429Lfs*10 0.28 TCGA-D5-6530-01 4 166999171 166999171 C T TLL1 Nonsense_Mutation p.R811* 0.39 TCGA-D5-6530-01 4 175897608 175897608 G A ADAM29 Missense_Mutation p.R311H 0.31 tolerated(0.46) benign(0.023) TCGA-D5-6530-01 4 177036998 177036998 A - WDR17 Frame_Shift_Del p.T85Qfs*23 0.28 TCGA-D5-6530-01 4 17706664 17706664 C T FAM184B Missense_Mutation p.V446I 0.36 tolerated(0.15) benign(0.168) TCGA-D5-6530-01 4 177190237 177190237 C T ASB5 Missense_Mutation p.R8Q 0.35 tolerated_low_confidence(0.27) benign(0.295) TCGA-D5-6530-01 4 183673025 183673025 C G TENM3 Missense_Mutation p.N1234K 0.34 tolerated(0.05) benign(0) TCGA-D5-6530-01 4 184190314 184190314 C G WWC2 Missense_Mutation p.L800V 0.32 deleterious(0) benign(0.255) TCGA-D5-6530-01 4 184367314 184367314 A - CDKN2AIP Frame_Shift_Del p.T161Pfs*19 0.28 TCGA-D5-6530-01 4 184930985 184930985 G A STOX2 Missense_Mutation p.A332T 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6530-01 4 185350153 185350153 C T IRF2 Silent p.P22P 0.34 TCGA-D5-6530-01 4 186083941 186083941 A - KIAA1430 3'UTR 0.18 TCGA-D5-6530-01 4 24556366 24556368 AAG - DHX15 In_Frame_Del p.L354del 0.33 TCGA-D5-6530-01 4 25849258 25849258 T - SEL1L3 Frame_Shift_Del p.R131Gfs*15 0.30 TCGA-D5-6530-01 4 26490883 26490883 G A CCKAR Silent p.A112A 0.32 TCGA-D5-6530-01 4 27019447 27019447 C - STIM2 Frame_Shift_Del p.H545Tfs*64 0.30 TCGA-D5-6530-01 4 37445653 37445653 A G KIAA1239 Silent p.L681L 0.36 TCGA-D5-6530-01 4 38051490 38051491 AG - TBC1D1 Frame_Shift_Del p.V628Efs*7 0.40 TCGA-D5-6530-01 4 40045671 40045671 G A RP11-333E13.4 RNA 0.31 TCGA-D5-6530-01 4 40810467 40810467 C T NSUN7 Silent p.A556A 0.23 TCGA-D5-6530-01 4 4214618 4214618 G T OTOP1 Missense_Mutation p.H173N 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-D5-6530-01 4 4242059 4242059 T C TMEM128 Silent p.A105A 0.25 TCGA-D5-6530-01 4 4304748 4304748 C T ZBTB49 Silent p.Y395Y 0.51 TCGA-D5-6530-01 4 46252445 46252445 G A GABRA2 Silent p.N412N 0.32 TCGA-D5-6530-01 4 47427852 47427852 C T GABRB1 Silent p.Y414Y 0.38 TCGA-D5-6530-01 4 47538043 47538043 C T ATP10D Silent p.G336G 0.21 TCGA-D5-6530-01 4 5624607 5624607 T C EVC2 Missense_Mutation p.T720A 0.40 tolerated(0.55) benign(0) TCGA-D5-6530-01 4 57865784 57865784 G A POLR2B Missense_Mutation p.G246D 0.35 tolerated(0.11) possibly_damaging(0.474) TCGA-D5-6530-01 4 69535696 69535696 T - UGT2B15 Frame_Shift_Del p.N214Ifs*2 0.28 TCGA-D5-6530-01 4 69693053 69693054 - A UGT2B10 Frame_Shift_Ins p.T367Nfs*15 0.23 TCGA-D5-6530-01 4 7000829 7000829 C T TBC1D14 Nonsense_Mutation p.R355* 0.40 TCGA-D5-6530-01 4 7436159 7436159 G T PSAPL1 Missense_Mutation p.L150M 0.26 tolerated(0.19) benign(0.137) TCGA-D5-6530-01 4 76912030 76912030 A - SDAD1 5'UTR 0.25 TCGA-D5-6530-01 4 77095311 77095311 C T SCARB2 Missense_Mutation p.S327N 0.31 deleterious(0) probably_damaging(0.995) TCGA-D5-6530-01 4 79202581 79202581 T C FRAS1 Silent p.R367R 0.39 TCGA-D5-6530-01 4 79429983 79429983 C A FRAS1 Silent p.P3201P 0.35 TCGA-D5-6530-01 4 88035864 88035864 A C AFF1 Missense_Mutation p.S627R 0.36 tolerated(0.07) unknown(0) TCGA-D5-6530-01 4 88414908 88414908 G A SPARCL1 Silent p.G348G 0.33 TCGA-D5-6530-01 4 88766991 88766991 C T MEPE Missense_Mutation p.A324V 0.35 tolerated(0.25) benign(0.016) TCGA-D5-6530-01 4 89199626 89199626 G A PPM1K Missense_Mutation p.T37M 0.38 tolerated_low_confidence(0.1) benign(0.062) TCGA-D5-6530-01 4 89912236 89912236 A G FAM13A Missense_Mutation p.Y165H 0.03 deleterious(0.04) possibly_damaging(0.774) TCGA-D5-6530-01 4 96163629 96163629 G A UNC5C Silent p.D353D 0.32 TCGA-D5-6530-01 4 96163729 96163729 G A UNC5C Missense_Mutation p.T320M 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6530-01 4 9785349 9785349 G C DRD5 3'UTR 0.31 TCGA-D5-6530-01 4 9785421 9785421 G T DRD5 3'UTR 0.20 TCGA-D5-6530-01 4 994678 994678 C T IDUA Silent p.L132L 0.36 TCGA-D5-6530-01 5 101834208 101834208 A G SLCO6A1 Missense_Mutation p.I114T 0.62 tolerated(0.26) benign(0.194) TCGA-D5-6530-01 5 102612418 102612419 - G C5orf30 3'UTR 0.34 TCGA-D5-6530-01 5 1063991 1063991 G A SLC12A7 Missense_Mutation p.R903C 0.39 deleterious(0) benign(0.304) TCGA-D5-6530-01 5 110836670 110836670 A - STARD4 Intron 0.23 TCGA-D5-6530-01 5 114598483 114598483 C T PGGT1B Silent p.R22R 0.37 TCGA-D5-6530-01 5 114961352 114961352 C T TMED7-TICAM2 Silent p.K46K 0.38 TCGA-D5-6530-01 5 118500355 118500355 G A DMXL1 Missense_Mutation p.R1619H 0.38 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 5 129521508 129521508 T - CHSY3 3'UTR 0.41 TCGA-D5-6530-01 5 131396414 131396414 C T IL3 Silent p.P5P 0.34 TCGA-D5-6530-01 5 132088744 132088744 A G CCNI2 3'UTR 0.42 TCGA-D5-6530-01 5 132160965 132160965 C T SHROOM1 Missense_Mutation p.G290R 0.25 tolerated(0.46) benign(0.003) TCGA-D5-6530-01 5 133914303 133914303 C A JADE2 Missense_Mutation p.R557S 0.38 tolerated(0.17) benign(0.082) TCGA-D5-6530-01 5 134130580 134130580 C T DDX46 Missense_Mutation p.T556M 0.36 deleterious(0.02) probably_damaging(0.968) TCGA-D5-6530-01 5 134192670 134192670 C - C5orf24 3'UTR 0.24 TCGA-D5-6530-01 5 137505021 137505021 G - BRD8 Frame_Shift_Del p.R178Gfs*6 0.27 TCGA-D5-6530-01 5 13753557 13753557 G A DNAH5 Missense_Mutation p.R3553W 0.04 possibly_damaging(0.689) TCGA-D5-6530-01 5 13766239 13766239 G - DNAH5 Frame_Shift_Del p.P3316Lfs*22 0.26 TCGA-D5-6530-01 5 138209232 138209232 G A LRRTM2 Missense_Mutation p.H340Y 0.36 deleterious(0.01) benign(0.009) TCGA-D5-6530-01 5 13830840 13830840 C - DNAH5 Frame_Shift_Del p.G1976Efs*78 0.29 TCGA-D5-6530-01 5 139886500 139886500 G A ANKHD1 Silent p.A1163A 0.33 TCGA-D5-6530-01 5 140050961 140050961 G A DND1 Missense_Mutation p.R327W 0.14 deleterious(0.01) possibly_damaging(0.614) TCGA-D5-6530-01 5 140182243 140182243 C T PCDHA3 Silent p.N487N 0.24 TCGA-D5-6530-01 5 140215296 140215296 T C PCDHA7 Missense_Mutation p.V443A 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-D5-6530-01 5 140249772 140249772 G A PCDHA11 Missense_Mutation p.A362T 0.40 tolerated_low_confidence(0.1) benign(0.173) TCGA-D5-6530-01 5 140256124 140256124 C T PCDHA12 Missense_Mutation p.S356L 0.37 deleterious_low_confidence(0.04) benign(0.321) TCGA-D5-6530-01 5 140503174 140503174 G A PCDHB4 Missense_Mutation p.A532T 0.35 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D5-6530-01 5 140588976 140588976 C T PCDHB12 Missense_Mutation p.A166V 0.36 deleterious_low_confidence(0.01) benign(0.315) TCGA-D5-6530-01 5 140683196 140683196 C T SLC25A2 Silent p.S79S 0.39 TCGA-D5-6530-01 5 140683405 140683405 C T SLC25A2 Missense_Mutation p.A10T 0.35 tolerated(0.41) benign(0.048) TCGA-D5-6530-01 5 140719028 140719028 G A PCDHGA2 Missense_Mutation p.E164K 0.48 tolerated_low_confidence(0.36) benign(0.029) TCGA-D5-6530-01 5 140767531 140767531 C T PCDHGB4 Missense_Mutation p.P27L 0.26 tolerated(0.31) benign(0.002) TCGA-D5-6530-01 5 140794291 140794291 G A PCDHGA10 Missense_Mutation p.V517I 0.37 tolerated_low_confidence(0.19) benign(0.053) TCGA-D5-6530-01 5 145834803 145834803 C A TCERG1 Missense_Mutation p.P82T 0.35 deleterious(0.01) possibly_damaging(0.641) TCGA-D5-6530-01 5 149226925 149226925 G T PPARGC1B Intron 0.35 TCGA-D5-6530-01 5 149374722 149374722 G A TIGD6 Missense_Mutation p.A397V 0.34 tolerated(0.63) benign(0.001) TCGA-D5-6530-01 5 149384422 149384422 G A HMGXB3 Missense_Mutation p.A3T 0.37 tolerated_low_confidence(0.1) benign(0.053) TCGA-D5-6530-01 5 154311118 154311118 G A GEMIN5 Silent p.N227N 0.29 TCGA-D5-6530-01 5 159841433 159841433 A G SLU7 Missense_Mutation p.Y73H 0.34 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 5 169144465 169144465 T A DOCK2 Missense_Mutation p.H703Q 0.16 deleterious(0) possibly_damaging(0.466) TCGA-D5-6530-01 5 171484356 171484358 CTC - STK10 In_Frame_Del p.E778del 0.32 TCGA-D5-6530-01 5 175112556 175112556 T - HRH2 3'UTR 0.27 TCGA-D5-6530-01 5 176728956 176728956 C T RAB24 Missense_Mutation p.V173I 0.37 tolerated(0.35) benign(0.025) TCGA-D5-6530-01 5 176963679 176963679 G A FAM193B Silent p.T252T 0.35 TCGA-D5-6530-01 5 178373943 178373943 G A ZNF454 Missense_Mutation p.R69K 0.34 tolerated(1) benign(0.004) TCGA-D5-6530-01 5 178564839 178564839 G A ADAMTS2 Missense_Mutation p.R628C 0.37 deleterious(0.03) possibly_damaging(0.841) TCGA-D5-6530-01 5 179046282 179046282 C A HNRNPH1 Missense_Mutation p.R175I 0.35 deleterious(0.03) probably_damaging(0.914) TCGA-D5-6530-01 5 32097388 32097390 GAA - PDZD2 In_Frame_Del p.E2618del 0.40 TCGA-D5-6530-01 5 33964116 33964116 C T SLC45A2 Missense_Mutation p.G190R 0.25 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 5 34869071 34869071 C T TTC23L Missense_Mutation p.A301V 0.33 tolerated(0.56) possibly_damaging(0.475) TCGA-D5-6530-01 5 35867541 35867541 A - IL7R Frame_Shift_Del p.I121* 0.25 TCGA-D5-6530-01 5 37052612 37052612 C T NIPBL Missense_Mutation p.R2403C 0.27 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 5 43388494 43388494 C T CCL28 Missense_Mutation p.R50H 0.22 tolerated(0.38) benign(0.005) TCGA-D5-6530-01 5 434066 434066 C T AHRR Missense_Mutation p.A426V 0.31 tolerated(0.1) benign(0.075) TCGA-D5-6530-01 5 44813322 44813322 T - MRPS30 Frame_Shift_Del p.F324Lfs*37 0.24 TCGA-D5-6530-01 5 50057723 50057723 C T PARP8 Silent p.Y138Y 0.33 TCGA-D5-6530-01 5 53816335 53816335 C T SNX18 3'UTR 0.37 TCGA-D5-6530-01 5 54420819 54420819 G A CDC20B Missense_Mutation p.R343W 0.30 deleterious(0.03) probably_damaging(0.918) TCGA-D5-6530-01 5 5457725 5457725 T - KIAA0947 Frame_Shift_Del p.F326Lfs*82 0.29 TCGA-D5-6530-01 5 56778450 56778450 G - ACTBL2 Frame_Shift_Del p.R29Gfs*7 0.26 TCGA-D5-6530-01 5 57752993 57753012 AGATAGTGCACCAACCTGCA GATAGTGCACCAACCTGC PLK2 Splice_Site p.X335_splice 0.22 TCGA-D5-6530-01 5 58286664 58286664 C T PDE4D Silent p.R418R 0.26 TCGA-D5-6530-01 5 64466460 64466460 G - ADAMTS6 Frame_Shift_Del p.I1077Ffs*10 0.28 TCGA-D5-6530-01 5 64769520 64769520 T - ADAMTS6 5'UTR 0.24 TCGA-D5-6530-01 5 67522752 67522752 G A PIK3R1 Silent p.S83S 0.35 TCGA-D5-6530-01 5 71757120 71757120 G A ZNF366 Silent p.P68P 0.38 TCGA-D5-6530-01 5 74877193 74877193 T - POLK Frame_Shift_Del p.F286Lfs*9 0.25 TCGA-D5-6530-01 5 76173561 76173561 C T S100Z Silent p.N68N 0.37 TCGA-D5-6530-01 5 80643626 80643626 G A ACOT12 Missense_Mutation p.A207V 0.34 deleterious(0) probably_damaging(0.916) TCGA-D5-6530-01 5 94927120 94927120 C T ARSK Missense_Mutation p.A296V 0.53 deleterious(0) probably_damaging(0.933) TCGA-D5-6530-01 6 105776748 105776748 T G PREP Missense_Mutation p.K390T 0.36 tolerated(0.11) benign(0.033) TCGA-D5-6530-01 6 10877619 10877619 C T GCM2 Missense_Mutation p.A33T 0.36 tolerated(0.26) benign(0.009) TCGA-D5-6530-01 6 119136130 119136130 G A MCM9 Missense_Mutation p.R1097C 0.34 tolerated_low_confidence(0.18) benign(0.066) TCGA-D5-6530-01 6 127796640 127796640 C T SOGA3 Missense_Mutation p.R844H 0.08 deleterious(0) possibly_damaging(0.891) TCGA-D5-6530-01 6 129634198 129634198 A - LAMA2 Frame_Shift_Del p.K1124Nfs*15 0.26 TCGA-D5-6530-01 6 131225637 131225637 A G EPB41L2 Silent p.P299P 0.36 TCGA-D5-6530-01 6 13185110 13185111 - C PHACTR1 Frame_Shift_Ins p.K137Qfs*11 0.25 TCGA-D5-6530-01 6 132030636 132030636 C T CTAGE9 Missense_Mutation p.D508N 0.30 tolerated(0.16) possibly_damaging(0.897) TCGA-D5-6530-01 6 138584288 138584288 G A KIAA1244 Silent p.A556A 0.46 TCGA-D5-6530-01 6 146266724 146266724 T - SHPRH Frame_Shift_Del p.G458Efs*26 0.24 TCGA-D5-6530-01 6 148865890 148865890 C T SASH1 Missense_Mutation p.T1095M 0.39 tolerated(1) benign(0.002) TCGA-D5-6530-01 6 149395142 149395142 C - UST Frame_Shift_Del p.L373* 0.28 TCGA-D5-6530-01 6 149700196 149700196 G A TAB2 Missense_Mutation p.R382H 0.33 deleterious(0.04) probably_damaging(0.996) TCGA-D5-6530-01 6 151686622 151686622 A - ZBTB2 3'UTR 0.28 TCGA-D5-6530-01 6 151687433 151687433 G A ZBTB2 Silent p.C256C 0.36 TCGA-D5-6530-01 6 151775733 151775733 A G C6orf211 Missense_Mutation p.K31R 0.41 tolerated(0.21) benign(0.077) TCGA-D5-6530-01 6 154521166 154521166 C T IPCEF1 Silent p.Q182Q 0.36 TCGA-D5-6530-01 6 15501486 15501486 C T JARID2 Missense_Mutation p.A765V 0.43 tolerated(1) benign(0.001) TCGA-D5-6530-01 6 155153583 155153583 T C SCAF8 Missense_Mutation p.V957A 0.35 deleterious_low_confidence(0) benign(0.304) TCGA-D5-6530-01 6 155752006 155752006 G A NOX3 Nonsense_Mutation p.R288* 0.32 TCGA-D5-6530-01 6 157528657 157528657 C T ARID1B Nonsense_Mutation p.R2128* 0.36 TCGA-D5-6530-01 6 159646581 159646581 G A FNDC1 Missense_Mutation p.R300H 0.35 deleterious(0) unknown(0) TCGA-D5-6530-01 6 159653508 159653508 G A FNDC1 Missense_Mutation p.G655D 0.39 deleterious_low_confidence(0.04) unknown(0) TCGA-D5-6530-01 6 160913883 160913883 G A LPAL2 RNA 0.05 TCGA-D5-6530-01 6 168352835 168352835 A G MLLT4 Missense_Mutation p.M1594V 0.41 tolerated_low_confidence(0.09) benign(0.018) TCGA-D5-6530-01 6 168369791 168369791 A G MLLT4 3'Flank 0.41 TCGA-D5-6530-01 6 170059245 170059245 G A WDR27 Missense_Mutation p.P419L 0.41 tolerated(1) benign(0.002) TCGA-D5-6530-01 6 21595002 21595002 G A SOX4 Silent p.E79E 0.35 TCGA-D5-6530-01 6 22294695 22294695 G A PRL Silent p.R49R 0.35 TCGA-D5-6530-01 6 24533850 24533850 A G ALDH5A1 Silent p.G519G 0.32 TCGA-D5-6530-01 6 25491961 25491961 A G LRRC16A Missense_Mutation p.H356R 0.34 tolerated(0.07) benign(0.036) TCGA-D5-6530-01 6 25799041 25799041 G A SLC17A1 Missense_Mutation p.A459V 0.30 deleterious(0.01) probably_damaging(0.948) TCGA-D5-6530-01 6 25923989 25923989 G T SLC17A2 Silent p.S58S 0.35 TCGA-D5-6530-01 6 26107687 26107687 C T HIST1H1T 3'UTR 0.39 TCGA-D5-6530-01 6 26271227 26271227 C T HIST1H3G Missense_Mutation p.R129H 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.628) TCGA-D5-6530-01 6 26468376 26468376 G A BTN2A1 Missense_Mutation p.V395M 0.34 tolerated(0.09) possibly_damaging(0.473) TCGA-D5-6530-01 6 28294201 28294201 T - ZSCAN31 Frame_Shift_Del p.K321Nfs*116 0.27 TCGA-D5-6530-01 6 2836216 2836217 TT - SERPINB1 Frame_Shift_Del p.K203Ifs*10 0.28 TCGA-D5-6530-01 6 28502011 28502011 A - GPX5 3'UTR 0.61 TCGA-D5-6530-01 6 30309602 30309602 C T TRIM39 Missense_Mutation p.R375C 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 6 30673051 30673051 G - MDC1 Frame_Shift_Del p.K1304Sfs*57 0.28 TCGA-D5-6530-01 6 31735220 31735220 C T VWA7 Missense_Mutation p.V570M 0.41 deleterious(0.02) probably_damaging(0.916) TCGA-D5-6530-01 6 31765401 31765402 - A LSM2 3'UTR 0.30 TCGA-D5-6530-01 6 31857360 31857360 G A EHMT2 Missense_Mutation p.T295I 0.37 deleterious(0.04) benign(0.01) TCGA-D5-6530-01 6 31867988 31867988 G A ZBTB12 Silent p.G365G 0.31 TCGA-D5-6530-01 6 31938207 31938207 C T DXO Silent p.P287P 0.42 TCGA-D5-6530-01 6 32151302 32151302 A G RNF5 3'Flank 0.37 TCGA-D5-6530-01 6 33263106 33263106 C - RGL2 Frame_Shift_Del p.E372Kfs*34 0.40 TCGA-D5-6530-01 6 33371843 33371844 - A KIFC1 Frame_Shift_Ins p.Q234Tfs*52 0.38 TCGA-D5-6530-01 6 33696072 33696072 C T IP6K3 Missense_Mutation p.V69I 0.31 tolerated(0.57) benign(0.002) TCGA-D5-6530-01 6 34508885 34508885 G - SPDEF Frame_Shift_Del p.M171Wfs*45 0.31 TCGA-D5-6530-01 6 35108560 35108560 G - TCP11 Frame_Shift_Del p.Q43Rfs*19 0.28 TCGA-D5-6530-01 6 36287199 36287199 C G C6orf222 Missense_Mutation p.M619I 0.36 tolerated(0.64) benign(0) TCGA-D5-6530-01 6 37438827 37438827 G A CMTR1 Silent p.A512A 0.35 TCGA-D5-6530-01 6 39025301 39025301 C T GLP1R Missense_Mutation p.P77S 0.41 deleterious(0) possibly_damaging(0.886) TCGA-D5-6530-01 6 41001661 41001661 G A UNC5CL Silent p.H215H 0.40 TCGA-D5-6530-01 6 41774592 41774592 C T USP49 Missense_Mutation p.V44M 0.41 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 6 42902313 42902313 C A CNPY3 Silent p.A84A 0.37 TCGA-D5-6530-01 6 43160827 43160827 C A CUL9 Missense_Mutation p.L757M 0.31 tolerated(0.06) probably_damaging(0.996) TCGA-D5-6530-01 6 43171285 43171285 G A CUL9 Missense_Mutation p.R1327Q 0.33 tolerated(1) benign(0.01) TCGA-D5-6530-01 6 43251004 43251004 C T TTBK1 Silent p.G842G 0.04 TCGA-D5-6530-01 6 43487802 43487804 AGG - POLR1C Splice_Site p.X128_splice 0.37 TCGA-D5-6530-01 6 43596795 43596797 GCC - GTPBP2 In_Frame_Del p.G35del 0.35 TCGA-D5-6530-01 6 46135861 46135861 G A ENPP5 Missense_Mutation p.P47S 0.34 tolerated(0.32) possibly_damaging(0.674) TCGA-D5-6530-01 6 4996575 4996575 C T RPP40 Silent p.T213T 0.08 TCGA-D5-6530-01 6 51947274 51947274 T A PKHD1 Missense_Mutation p.N66I 0.30 tolerated(0.07) benign(0.009) TCGA-D5-6530-01 6 52764801 52764801 C A GSTA3 Missense_Mutation p.E115D 0.32 tolerated(0.94) benign(0) TCGA-D5-6530-01 6 56485019 56485020 - T DST Intron 0.29 TCGA-D5-6530-01 6 71235776 71235776 A - FAM135A Frame_Shift_Del p.N999Ifs*5 0.36 TCGA-D5-6530-01 6 73110296 73110296 C T RIMS1 Silent p.I1653I 0.34 TCGA-D5-6530-01 6 7609224 7609224 T - SNRNP48 3'UTR 0.33 TCGA-D5-6530-01 6 80720539 80720539 A - TTK Frame_Shift_Del p.S162Vfs*9 0.25 TCGA-D5-6530-01 6 80877453 80877453 C T BCKDHB Silent p.I134I 0.30 TCGA-D5-6530-01 6 82462419 82462419 T - FAM46A 5'UTR 0.29 TCGA-D5-6530-01 6 83075723 83075723 C - TPBG Frame_Shift_Del p.P350Hfs*14 0.14 TCGA-D5-6530-01 6 84235173 84235173 G A PRSS35 3'UTR 0.26 TCGA-D5-6530-01 6 84417598 84417598 C T SNAP91 Missense_Mutation p.V17I 0.36 deleterious(0.01) unknown(0) TCGA-D5-6530-01 6 90573318 90573318 G A CASP8AP2 RNA 0.34 TCGA-D5-6530-01 6 96655106 96655106 T C FUT9 3'UTR 0.43 TCGA-D5-6530-01 6 99285318 99285318 A - POU3F2 3'UTR 0.23 TCGA-D5-6530-01 6 99825362 99825363 - T COQ3 Splice_Site p.X129_splice 0.20 TCGA-D5-6530-01 7 100205607 100205607 G A PCOLCE Missense_Mutation p.V411I 0.31 tolerated(0.85) benign(0.003) TCGA-D5-6530-01 7 100253162 100253163 - C ACTL6B Frame_Shift_Ins p.G51Rfs*61 0.26 TCGA-D5-6530-01 7 100465777 100465777 C T TRIP6 Silent p.A95A 0.26 TCGA-D5-6530-01 7 100481744 100481744 G - SRRT Frame_Shift_Del p.A216Pfs*6 0.32 TCGA-D5-6530-01 7 101188754 101188754 C T COL26A1 Missense_Mutation p.P280L 0.29 deleterious(0.04) possibly_damaging(0.564) TCGA-D5-6530-01 7 102760123 102760123 A - NAPEPLD Frame_Shift_Del p.F281Sfs*14 0.30 TCGA-D5-6530-01 7 105205695 105205696 - T EFCAB10 3'UTR 0.29 TCGA-D5-6530-01 7 106508955 106508955 G A PIK3CG Missense_Mutation p.E317K 0.34 tolerated(0.75) benign(0.043) TCGA-D5-6530-01 7 107198538 107198538 G A COG5 Silent p.N70N 0.30 TCGA-D5-6530-01 7 112724069 112724069 A G GPR85 Silent p.S236S 0.41 TCGA-D5-6530-01 7 113518564 113518564 T - PPP1R3A Frame_Shift_Del p.K861Nfs*74 0.26 TCGA-D5-6530-01 7 11415446 11415446 G A THSD7A Missense_Mutation p.A1650V 0.33 deleterious(0) probably_damaging(0.997) TCGA-D5-6530-01 7 115624481 115624481 A G TFEC Silent p.H5H 0.32 TCGA-D5-6530-01 7 116339650 116339650 A G MET Missense_Mutation p.Q171R 0.42 tolerated(0.38) benign(0.007) TCGA-D5-6530-01 7 1195168 1195168 T - ZFAND2A Frame_Shift_Del p.K68Rfs*? 0.28 TCGA-D5-6530-01 7 120776131 120776131 A G CPED1 Missense_Mutation p.I562M 0.30 tolerated(0.23) benign(0.086) TCGA-D5-6530-01 7 121682740 121682740 C T PTPRZ1 Silent p.N1960N 0.37 TCGA-D5-6530-01 7 12384068 12384069 - T VWDE Frame_Shift_Ins p.S1305Kfs*2 0.14 TCGA-D5-6530-01 7 126173251 126173251 G A GRM8 Missense_Mutation p.R729W 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 7 126173278 126173278 G - GRM8 Frame_Shift_Del p.H720Tfs*12 0.28 TCGA-D5-6530-01 7 130418063 130418063 C T KLF14 Silent p.R266R 0.38 TCGA-D5-6530-01 7 134129999 134129999 G A AKR1B1 Missense_Mutation p.A300V 0.38 tolerated(0.21) benign(0.004) TCGA-D5-6530-01 7 134850070 134850070 G - TMEM140 3'UTR 0.24 TCGA-D5-6530-01 7 134850382 134850382 G T TMEM140 3'UTR 0.35 TCGA-D5-6530-01 7 135047792 135047792 G A CNOT4 Nonsense_Mutation p.Q663* 0.31 TCGA-D5-6530-01 7 135358980 135358980 T C C7orf73 3'UTR 0.06 TCGA-D5-6530-01 7 136701495 136701495 A G CHRM2 3'UTR 0.30 TCGA-D5-6530-01 7 138588381 138588381 G A KIAA1549 Missense_Mutation p.R1208W 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 7 139653218 139653218 C T TBXAS1 Missense_Mutation p.R215C 0.37 tolerated(0.06) benign(0.009) TCGA-D5-6530-01 7 139715640 139715640 G A TBXAS1 Silent p.P495P 0.40 TCGA-D5-6530-01 7 139796389 139796389 C T KDM7A Silent p.R780R 0.34 TCGA-D5-6530-01 7 14216380 14216380 A - DGKB Intron 0.22 TCGA-D5-6530-01 7 148876693 148876693 C T ZNF398 Missense_Mutation p.R577C 0.43 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 7 149547367 149547367 C T ZNF862 Missense_Mutation p.R353W 0.36 tolerated_low_confidence(0.09) benign(0.015) TCGA-D5-6530-01 7 150027921 150027921 A C ZBED6CL Missense_Mutation p.E143A 0.36 tolerated(0.36) benign(0.006) TCGA-D5-6530-01 7 150217844 150217845 - A GIMAP7 Frame_Shift_Ins p.N263Kfs*7 0.27 TCGA-D5-6530-01 7 150773332 150773332 C - SLC4A2 Intron 0.30 TCGA-D5-6530-01 7 150920819 150920819 G A ABCF2 Missense_Mutation p.R223C 0.34 tolerated(0.16) benign(0.008) TCGA-D5-6530-01 7 150939044 150939044 G A SMARCD3 Silent p.T232T 0.39 TCGA-D5-6530-01 7 150945721 150945721 T C SMARCD3 5'UTR 0.45 TCGA-D5-6530-01 7 151791468 151791468 A - GALNT11 Frame_Shift_Del p.K54Nfs*26 0.29 TCGA-D5-6530-01 7 154760555 154760555 C T PAXIP1 Silent p.Q452Q 0.41 TCGA-D5-6530-01 7 155599482 155599482 G T SHH Intron 0.42 TCGA-D5-6530-01 7 18788739 18788739 C T HDAC9 Missense_Mutation p.T674I 0.37 tolerated(0.05) possibly_damaging(0.519) TCGA-D5-6530-01 7 2472358 2472358 C T CHST12 Silent p.S28S 0.34 TCGA-D5-6530-01 7 25264520 25264520 T - NPVF 3'UTR 0.41 TCGA-D5-6530-01 7 2629712 2629712 G A IQCE Missense_Mutation p.A406T 0.32 tolerated(0.21) benign(0.108) TCGA-D5-6530-01 7 2696037 2696037 C T TTYH3 Silent p.Y373Y 0.33 TCGA-D5-6530-01 7 30656770 30656770 G A GARS Missense_Mutation p.R412H 0.35 deleterious(0) probably_damaging(0.983) TCGA-D5-6530-01 7 31124941 31124941 C T ADCYAP1R1 Missense_Mutation p.R185C 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 7 33427607 33427607 C T BBS9 Missense_Mutation p.R656W 0.33 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 7 35131520 35131520 C T DPY19L2P1 RNA 0.08 TCGA-D5-6530-01 7 35674784 35674784 C T HERPUD2 Missense_Mutation p.R301Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 7 38502594 38502594 C T AMPH Missense_Mutation p.R290Q 0.38 tolerated(0.32) probably_damaging(0.998) TCGA-D5-6530-01 7 38725414 38725414 G A FAM183B Silent p.D64D 0.32 TCGA-D5-6530-01 7 38768371 38768371 G A VPS41 Silent p.C760C 0.35 TCGA-D5-6530-01 7 42959155 42959155 A G PSMA2 Intron 0.33 TCGA-D5-6530-01 7 43351604 43351604 C T HECW1 Silent p.I90I 0.05 TCGA-D5-6530-01 7 44098510 44098510 G A DBNL Missense_Mutation p.V264M 0.24 tolerated(0.28) benign(0.005) TCGA-D5-6530-01 7 4796700 4796700 G T FOXK1 Missense_Mutation p.G376W 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 7 4821371 4821371 G A AP5Z1 Missense_Mutation p.V118I 0.34 tolerated(0.19) benign(0.259) TCGA-D5-6530-01 7 48506594 48506594 G A ABCA13 Missense_Mutation p.R4286Q 0.31 benign(0.019) TCGA-D5-6530-01 7 5267749 5267749 C T WIPI2 Missense_Mutation p.P343L 0.22 tolerated(0.57) benign(0.005) TCGA-D5-6530-01 7 57528793 57528793 G T ZNF716 Missense_Mutation p.R209M 0.30 deleterious(0.05) benign(0.033) TCGA-D5-6530-01 7 6464447 6464447 A - DAGLB Frame_Shift_Del p.L359* 0.26 TCGA-D5-6530-01 7 72755306 72755306 G T FKBP6 Missense_Mutation p.R273L 0.39 deleterious(0.04) benign(0.35) TCGA-D5-6530-01 7 75048170 75048170 G A POM121C Missense_Mutation p.A958V 0.34 deleterious(0.01) benign(0.209) TCGA-D5-6530-01 7 75933538 75933538 C - HSPB1 3'UTR 0.09 TCGA-D5-6530-01 7 77885853 77885853 G A MAGI2 Missense_Mutation p.T485I 0.34 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 7 80380645 80380645 G A SEMA3C Nonsense_Mutation p.R551* 0.38 TCGA-D5-6530-01 7 81642787 81642787 A G CACNA2D1 Missense_Mutation p.I421T 0.33 deleterious(0.01) probably_damaging(0.951) TCGA-D5-6530-01 7 89874708 89874708 C - C7orf63 5'UTR 0.35 TCGA-D5-6530-01 7 901037 901037 C T SUN1 Silent p.N600N 0.37 TCGA-D5-6530-01 7 91503981 91503981 G A MTERF Nonsense_Mutation p.R43* 0.36 TCGA-D5-6530-01 7 91742875 91742875 A - CYP51A1 3'UTR 0.24 TCGA-D5-6530-01 7 92764658 92764658 C T SAMD9L Silent p.T209T 0.35 TCGA-D5-6530-01 7 940176 940176 G A ADAP1 Silent p.D242D 0.35 TCGA-D5-6530-01 7 97875422 97875422 C T TECPR1 Missense_Mutation p.G13R 0.40 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 7 98256573 98256573 G A NPTX2 Missense_Mutation p.G329R 0.40 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 7 99654885 99654885 G T ZSCAN21 Nonsense_Mutation p.E86* 0.34 TCGA-D5-6530-01 7 99757934 99757934 G A GAL3ST4 Nonsense_Mutation p.R360* 0.41 TCGA-D5-6530-01 8 100523417 100523417 G A VPS13B Missense_Mutation p.R1462H 0.30 deleterious(0) probably_damaging(0.984) TCGA-D5-6530-01 8 101251598 101251600 AAG - SPAG1 In_Frame_Del p.E750del 0.28 TCGA-D5-6530-01 8 103274272 103274272 A - UBR5 Frame_Shift_Del p.F2571Lfs*4 0.24 TCGA-D5-6530-01 8 104394855 104394855 T - CTHRC1 3'UTR 0.25 TCGA-D5-6530-01 8 107773299 107773299 C T ABRA Missense_Mutation p.R371Q 0.35 tolerated(0.44) benign(0.142) TCGA-D5-6530-01 8 110465003 110465003 A - PKHD1L1 Frame_Shift_Del p.K2189Nfs*27 0.28 TCGA-D5-6530-01 8 113241029 113241029 A - CSMD3 Frame_Shift_Del p.F3640Lfs*61 0.26 TCGA-D5-6530-01 8 11400842 11400842 C T BLK Missense_Mutation p.P37S 0.36 tolerated(0.18) benign(0.171) TCGA-D5-6530-01 8 12883967 12883967 G - KIAA1456 3'UTR 0.32 TCGA-D5-6530-01 8 12886260 12886260 T - KIAA1456 3'UTR 0.41 TCGA-D5-6530-01 8 134225205 134225205 G A WISP1 Silent p.P56P 0.37 TCGA-D5-6530-01 8 13424587 13424587 T C C8orf48 Silent p.T29T 0.33 TCGA-D5-6530-01 8 135612914 135612914 A - ZFAT Intron 0.22 TCGA-D5-6530-01 8 141771320 141771320 G A PTK2 Nonsense_Mutation p.R426* 0.34 TCGA-D5-6530-01 8 143746564 143746564 G A JRK RNA 0.42 TCGA-D5-6530-01 8 144391565 144391565 A - TOP1MT 3'UTR 0.33 TCGA-D5-6530-01 8 144734621 144734621 T - ZNF623 3'UTR 0.38 TCGA-D5-6530-01 8 145151057 145151057 G T CYC1 Missense_Mutation p.Q119H 0.10 deleterious(0) probably_damaging(0.979) TCGA-D5-6530-01 8 145157951 145157951 G A SHARPIN Intron 0.35 TCGA-D5-6530-01 8 145161488 145161488 C T MAF1 Silent p.F177F 0.32 TCGA-D5-6530-01 8 17088124 17088124 G - CNOT7 3'UTR 0.32 TCGA-D5-6530-01 8 19709225 19709225 G A INTS10 Missense_Mutation p.R681H 0.34 deleterious(0) possibly_damaging(0.64) TCGA-D5-6530-01 8 21894201 21894201 C T NPM2 3'UTR 0.40 TCGA-D5-6530-01 8 21976493 21976493 G A HR Silent p.D1061D 0.35 TCGA-D5-6530-01 8 22398337 22398337 A G PPP3CC 3'UTR 0.37 TCGA-D5-6530-01 8 22675245 22675245 C T PEBP4 Missense_Mutation p.A88T 0.37 tolerated(0.2) benign(0.086) TCGA-D5-6530-01 8 24344711 24344711 T C ADAM7 Silent p.P324P 0.32 TCGA-D5-6530-01 8 26149253 26149253 C - PPP2R2A 5'Flank 0.40 TCGA-D5-6530-01 8 27295390 27295390 G A PTK2B Missense_Mutation p.V546M 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6530-01 8 27645492 27645493 - A ESCO2 Frame_Shift_Ins p.T371Nfs*32 0.28 TCGA-D5-6530-01 8 30210554 30210554 G T TUBBP1 RNA 0.23 TCGA-D5-6530-01 8 30703470 30703470 C A TEX15 Nonsense_Mutation p.G1022* 0.32 TCGA-D5-6530-01 8 36793078 36793078 A G KCNU1 Silent p.S1030S 0.31 TCGA-D5-6530-01 8 37611633 37611633 A - ERLIN2 Frame_Shift_Del 0.23 TCGA-D5-6530-01 8 41394773 41394773 C A GINS4 Silent p.R86R 0.30 TCGA-D5-6530-01 8 4851930 4851930 C T CSMD1 Silent p.A3A 0.34 TCGA-D5-6530-01 8 51621538 51621538 G T SNTG1 Missense_Mutation p.K428N 0.35 deleterious(0) probably_damaging(0.988) TCGA-D5-6530-01 8 57219270 57219270 A - SDR16C5 Frame_Shift_Del p.F225Lfs*2 0.24 TCGA-D5-6530-01 8 61693860 61693860 C T CHD7 Missense_Mutation p.P656L 0.36 possibly_damaging(0.726) TCGA-D5-6530-01 8 6360593 6360593 G A ANGPT2 3'UTR 0.36 TCGA-D5-6530-01 8 67479179 67479180 - T MYBL1 Frame_Shift_Ins p.E593Rfs*14 0.23 TCGA-D5-6530-01 8 67786699 67786699 A - MCMDC2 Intron 0.26 TCGA-D5-6530-01 8 73850434 73850434 A - KCNB2 3'UTR 0.40 TCGA-D5-6530-01 8 75898440 75898440 G A CRISPLD1 Missense_Mutation p.R73Q 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 8 7718228 7718228 T - SPAG11A Frame_Shift_Del p.F94Sfs*63 0.30 TCGA-D5-6530-01 8 77767704 77767704 A - ZFHX4 Frame_Shift_Del p.K2850Nfs*55 0.24 TCGA-D5-6530-01 8 77768212 77768212 C T ZFHX4 Missense_Mutation p.R3019C 0.31 probably_damaging(0.989) TCGA-D5-6530-01 8 80677610 80677610 A G HEY1 Missense_Mutation p.V247A 0.30 tolerated(0.68) benign(0.133) TCGA-D5-6530-01 8 81553683 81553683 C T ZNF704 Missense_Mutation p.R386Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 8 8235137 8235137 G T SGK223 Missense_Mutation p.P261H 0.37 possibly_damaging(0.862) TCGA-D5-6530-01 8 82670837 82670837 T - CHMP4C 3'UTR 0.35 TCGA-D5-6530-01 8 86250494 86250494 G A CA1 Silent p.N74N 0.34 TCGA-D5-6530-01 8 87393781 87393781 G A WWP1 Missense_Mutation p.R86H 0.34 tolerated(1) benign(0) TCGA-D5-6530-01 8 88884172 88884173 - T DCAF4L2 3'UTR 0.20 TCGA-D5-6530-01 8 90967512 90967512 T - NBN Frame_Shift_Del p.R466Gfs*18 0.20 TCGA-D5-6530-01 8 92212876 92212876 A G LRRC69 Silent p.A263A 0.36 TCGA-D5-6530-01 8 94747120 94747120 G T RBM12B Missense_Mutation p.H507N 0.36 tolerated(0.13) benign(0.016) TCGA-D5-6530-01 8 95653516 95653517 - C ESRP1 5'UTR 0.39 TCGA-D5-6530-01 8 96167602 96167603 - A PLEKHF2 3'UTR 0.20 TCGA-D5-6530-01 8 98673399 98673399 A G MTDH Missense_Mutation p.K161E 0.36 tolerated(0.18) probably_damaging(0.997) TCGA-D5-6530-01 9 100079374 100079374 C T CCDC180 Missense_Mutation p.R319W 0.39 deleterious(0) probably_damaging(0.992) TCGA-D5-6530-01 9 100258200 100258200 T - TDRD7 3'UTR 0.19 TCGA-D5-6530-01 9 101156506 101156506 G A GABBR2 Silent p.N443N 0.35 TCGA-D5-6530-01 9 107593323 107593323 C - ABCA1 Frame_Shift_Del p.G592Afs*17 0.32 TCGA-D5-6530-01 9 115652461 115652461 G A SLC46A2 Silent p.G167G 0.37 TCGA-D5-6530-01 9 116079127 116079127 C T WDR31 Missense_Mutation p.A336T 0.35 tolerated(0.82) benign(0) TCGA-D5-6530-01 9 116931146 116931146 G A COL27A1 Silent p.P437P 0.40 TCGA-D5-6530-01 9 117106052 117106052 C T AKNA Silent p.A1231A 0.39 TCGA-D5-6530-01 9 117666405 117666406 - T TNFSF8 Frame_Shift_Ins p.Q171Tfs*8 0.26 TCGA-D5-6530-01 9 117827069 117827069 T A TNC Missense_Mutation p.E1115V 0.31 tolerated(0.1) probably_damaging(0.912) TCGA-D5-6530-01 9 119461749 119461749 C T TRIM32 Silent p.R576R 0.35 TCGA-D5-6530-01 9 121976252 121976252 C T BRINP1 Silent p.T289T 0.29 TCGA-D5-6530-01 9 125273519 125273519 G A OR1J2 Missense_Mutation p.V147I 0.04 tolerated_low_confidence(0.41) benign(0.021) TCGA-D5-6530-01 9 125796923 125796923 T - GPR21 Frame_Shift_Del p.C28Afs*6 0.27 TCGA-D5-6530-01 9 127572206 127572206 C T OLFML2A Missense_Mutation p.R492W 0.35 deleterious(0) possibly_damaging(0.898) TCGA-D5-6530-01 9 127911919 127911919 C T PPP6C 3'UTR 0.34 TCGA-D5-6530-01 9 127999271 127999271 T - HSPA5 Frame_Shift_Del p.N522Ifs*12 0.25 TCGA-D5-6530-01 9 128099845 128099845 C T GAPVD1 Missense_Mutation p.P978L 0.38 tolerated_low_confidence(0.2) probably_damaging(1) TCGA-D5-6530-01 9 128201069 128201069 C - MAPKAP1 3'UTR 0.34 TCGA-D5-6530-01 9 128725303 128725303 C T PBX3 Missense_Mutation p.R379C 0.36 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-D5-6530-01 9 129598845 129598845 T - ZBTB43 3'UTR 0.26 TCGA-D5-6530-01 9 129644231 129644231 T - ZBTB34 3'UTR 0.35 TCGA-D5-6530-01 9 129854186 129854186 G A ANGPTL2 Silent p.L349L 0.35 TCGA-D5-6530-01 9 130074001 130074001 T - GARNL3 Frame_Shift_Del p.L104* 0.28 TCGA-D5-6530-01 9 130548406 130548406 C T CDK9 5'UTR 0.40 TCGA-D5-6530-01 9 130566810 130566810 C T FPGS Silent p.H100H 0.33 TCGA-D5-6530-01 9 132630569 132630569 C A USP20 Silent p.R326R 0.32 TCGA-D5-6530-01 9 133760024 133760024 C - ABL1 Frame_Shift_Del p.R804Gfs*3 0.33 TCGA-D5-6530-01 9 133760422 133760422 G A ABL1 Silent p.S934S 0.35 TCGA-D5-6530-01 9 135418388 135418388 C T C9orf171 Missense_Mutation p.P265L 0.32 tolerated(0.42) probably_damaging(0.969) TCGA-D5-6530-01 9 135787705 135787705 T C TSC1 Missense_Mutation p.T293A 0.07 tolerated(0.26) benign(0.002) TCGA-D5-6530-01 9 135933396 135933396 C T GTF3C5 3'UTR 0.36 TCGA-D5-6530-01 9 136231855 136231855 C T SURF4 Missense_Mutation p.R135H 0.42 tolerated(0.06) benign(0.269) TCGA-D5-6530-01 9 136297766 136297766 C T ADAMTS13 Missense_Mutation p.R349C 0.28 deleterious(0) probably_damaging(0.997) TCGA-D5-6530-01 9 136507472 136507472 C T DBH Silent p.D210D 0.37 TCGA-D5-6530-01 9 136649446 136649446 A T VAV2 Missense_Mutation p.F543I 0.03 deleterious(0.01) possibly_damaging(0.521) TCGA-D5-6530-01 9 137642653 137642653 C T COL5A1 Silent p.G529G 0.28 TCGA-D5-6530-01 9 138236080 138236080 C T C9orf62 Nonsense_Mutation p.Q96* 0.37 TCGA-D5-6530-01 9 138378840 138378840 C T PPP1R26 Silent p.S828S 0.26 TCGA-D5-6530-01 9 138642852 138642852 C T KCNT1 Silent p.R133R 0.33 TCGA-D5-6530-01 9 139282923 139282923 C T SNAPC4 Missense_Mutation p.V366I 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-D5-6530-01 9 139342941 139342942 - G SEC16A Intron 0.23 TCGA-D5-6530-01 9 139352011 139352011 C T SEC16A Missense_Mutation p.R1812H 0.36 deleterious(0) probably_damaging(0.998) TCGA-D5-6530-01 9 139872056 139872056 T C PTGDS Missense_Mutation p.M9T 0.31 tolerated(0.18) benign(0.01) TCGA-D5-6530-01 9 139904252 139904252 G A ABCA2 Missense_Mutation p.A2200V 0.38 deleterious(0) possibly_damaging(0.69) TCGA-D5-6530-01 9 140079412 140079412 C T ANAPC2 Missense_Mutation p.R334H 0.31 tolerated(0.06) benign(0.001) TCGA-D5-6530-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.27 TCGA-D5-6530-01 9 18777764 18777764 G A ADAMTSL1 Silent p.S1179S 0.34 TCGA-D5-6530-01 9 20414340 20414340 G A MLLT3 Silent p.S168S 0.34 TCGA-D5-6530-01 9 32784693 32784693 C - TMEM215 Frame_Shift_Del p.L172Sfs*74 0.30 TCGA-D5-6530-01 9 33385672 33385672 C T AQP7 Missense_Mutation p.A240T 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 9 33442242 33442242 G - AQP3 Intron 0.34 TCGA-D5-6530-01 9 33944585 33944585 T C UBAP2 Silent p.R441R 0.36 TCGA-D5-6530-01 9 34088274 34088274 A - DCAF12 3'UTR 0.38 TCGA-D5-6530-01 9 34493275 34493276 - A DNAI1 Frame_Shift_Ins p.S258Ifs*17 0.27 TCGA-D5-6530-01 9 35609184 35609184 C T TESK1 Silent p.P442P 0.35 TCGA-D5-6530-01 9 37441779 37441779 G A ZBTB5 Missense_Mutation p.A257V 0.34 deleterious_low_confidence(0.04) benign(0.026) TCGA-D5-6530-01 9 4585398 4585398 A C SLC1A1 Missense_Mutation p.Q472P 0.36 tolerated(0.12) benign(0.375) TCGA-D5-6530-01 9 6015394 6015394 C T RANBP6 Missense_Mutation p.A72T 0.35 deleterious(0) benign(0.043) TCGA-D5-6530-01 9 67793677 67793677 A T FAM27B Intron 0.17 TCGA-D5-6530-01 9 67793712 67793712 C G FAM27B Intron 0.11 TCGA-D5-6530-01 9 70177725 70177725 C A FOXD4L5 Missense_Mutation p.G87C 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-D5-6530-01 9 71098912 71098912 C T PGM5 Missense_Mutation p.T476M 0.35 deleterious(0.03) benign(0.018) TCGA-D5-6530-01 9 71851938 71851938 C T TJP2 Missense_Mutation p.R720C 0.29 deleterious(0) probably_damaging(1) TCGA-D5-6530-01 9 77400792 77400792 T - TRPM6 Frame_Shift_Del p.M973* 0.26 TCGA-D5-6530-01 9 77407626 77407626 A G TRPM6 Silent p.L818L 0.37 TCGA-D5-6530-01 9 79121761 79121761 A G GCNT1 3'UTR 0.38 TCGA-D5-6530-01 9 79461500 79461502 GAG - PRUNE2 In_Frame_Del p.S146_L147delinsF 0.38 TCGA-D5-6530-01 9 79982988 79982988 T C VPS13A Missense_Mutation p.L2830P 0.33 deleterious(0) probably_damaging(0.992) TCGA-D5-6530-01 9 80144022 80144022 T A GNA14 Missense_Mutation p.D91V 0.05 tolerated(0.11) benign(0.199) TCGA-D5-6530-01 9 91610691 91610691 C T C9orf47 3'UTR 0.32 TCGA-D5-6530-01 9 93983210 93983210 C T AUH Silent p.A240A 0.33 TCGA-D5-6530-01 9 95043165 95043165 T G IARS Missense_Mutation p.D203A 0.41 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 9 95776254 95776255 - C FGD3 Frame_Shift_Ins p.Q388Pfs*102 0.26 TCGA-D5-6530-01 9 97062729 97062729 C T ZNF169 Nonsense_Mutation p.R297* 0.35 TCGA-D5-6530-01 9 98231194 98231194 G T PTCH1 Missense_Mutation p.L697I 0.38 tolerated(0.09) benign(0.026) TCGA-D5-6530-01 9 98997648 98997648 G A HSD17B3 3'UTR 0.35 TCGA-D5-6530-01 X 107939659 107939659 A T COL4A5 3'UTR 0.55 TCGA-D5-6530-01 X 110973646 110973646 T C ALG13 Missense_Mutation p.Y798H 0.66 deleterious(0.02) probably_damaging(0.996) TCGA-D5-6530-01 X 114142021 114142021 G C HTR2C 3'UTR 0.71 TCGA-D5-6530-01 X 118281486 118281486 G - KIAA1210 Frame_Shift_Del p.S121Hfs*25 0.42 TCGA-D5-6530-01 X 129546566 129546566 T C RBMX2 Missense_Mutation p.L238P 0.69 tolerated(0.33) benign(0.002) TCGA-D5-6530-01 X 140996616 140996616 G A MAGEC1 Silent p.E1142E 0.74 TCGA-D5-6530-01 X 152482390 152482390 G A MAGEA1 Silent p.G207G 0.65 TCGA-D5-6530-01 X 153533622 153533622 G A TKTL1 Intron 0.60 TCGA-D5-6530-01 X 153699622 153699622 C T PLXNA3 Silent p.Y1777Y 0.70 TCGA-D5-6530-01 X 154010005 154010005 G A MPP1 Missense_Mutation p.T340M 0.68 tolerated(0.26) possibly_damaging(0.735) TCGA-D5-6530-01 X 1712415 1712415 C T AKAP17A Silent p.Y20Y 0.32 TCGA-D5-6530-01 X 18662650 18662650 C T RS1 Missense_Mutation p.R141H 0.71 deleterious(0) probably_damaging(0.995) TCGA-D5-6530-01 X 209765 209765 G A PLCXD1 Missense_Mutation p.E205K 0.35 tolerated(0.32) benign(0.124) TCGA-D5-6530-01 X 24734570 24734570 C T POLA1 Missense_Mutation p.T200M 0.73 tolerated(0.14) benign(0.007) TCGA-D5-6530-01 X 26212738 26212738 G A MAGEB6 Missense_Mutation p.G259S 0.07 tolerated(0.38) probably_damaging(0.999) TCGA-D5-6530-01 X 27998893 27998893 G A DCAF8L1 Missense_Mutation p.R187C 0.04 tolerated(0.2) benign(0.001) TCGA-D5-6530-01 X 302052 302052 T - PPP2R3B Frame_Shift_Del p.T389Hfs*70 0.30 TCGA-D5-6530-01 X 30270109 30270109 T - MAGEB1 3'UTR 0.39 TCGA-D5-6530-01 X 31526350 31526350 A G DMD Intron 0.71 TCGA-D5-6530-01 X 3229022 3229022 C A MXRA5 Missense_Mutation p.A2408S 0.67 deleterious(0.01) possibly_damaging(0.808) TCGA-D5-6530-01 X 34961788 34961788 G A FAM47B Silent p.A280A 0.07 TCGA-D5-6530-01 X 37028491 37028491 C - FAM47C Frame_Shift_Del p.E672Rfs*153 0.44 TCGA-D5-6530-01 X 37553734 37553734 C T XK Silent p.G147G 0.72 TCGA-D5-6530-01 X 38664979 38664979 G - MID1IP1 3'UTR 0.46 TCGA-D5-6530-01 X 49646534 49646534 G - USP27X 3'UTR 0.40 TCGA-D5-6530-01 X 51487039 51487039 G - GSPT2 Frame_Shift_Del p.A108Hfs*11 0.58 TCGA-D5-6530-01 X 53591615 53591615 C T HUWE1 Missense_Mutation p.D2317N 0.73 possibly_damaging(0.823) TCGA-D5-6530-01 X 54337664 54337664 C T WNK3 Missense_Mutation p.G200S 0.73 deleterious(0) probably_damaging(0.999) TCGA-D5-6530-01 X 57407443 57407443 T G FAAH2 Missense_Mutation p.L326R 0.07 deleterious(0) possibly_damaging(0.812) TCGA-D5-6530-01 X 65418833 65418833 G A HEPH Silent p.E663E 0.71 TCGA-D5-6530-01 X 68748875 68748875 G A FAM155B Missense_Mutation p.V301M 0.08 deleterious(0) probably_damaging(0.991) TCGA-D5-6530-01 X 75650460 75650460 T - MAGEE1 Frame_Shift_Del p.F714Lfs*74 0.45 TCGA-D5-6530-01 X 83724443 83724443 A C HDX Silent p.S96S 0.70 TCGA-D5-6530-01 X 84310909 84310909 G T APOOL Silent p.A124A 0.62 TCGA-D5-6530-01 X 84600980 84600980 G T POF1B Missense_Mutation p.H203Q 0.76 tolerated_low_confidence(0.69) benign(0.009) TCGA-D5-6530-01 X 99605662 99605662 C T PCDH19 Missense_Mutation p.R886Q 0.66 deleterious(0.04) probably_damaging(0.98) TCGA-D5-6530-01 X 99657540 99657540 G A PCDH19 Silent p.N866N 0.74 TCGA-D5-6530-01 Y 14891502 14891502 G A USP9Y Missense_Mutation p.V1025I 0.73 tolerated(0.08) benign(0.002) TCGA-D5-6530-01 Y 16942330 16942330 A T NLGN4Y Missense_Mutation p.N511I 0.70 deleterious(0) probably_damaging(0.957) TCGA-D5-6531-01 10 116060073 116060073 C T AFAP1L2 Missense_Mutation p.V613I 0.33 tolerated(0.3) benign(0.012) TCGA-D5-6531-01 10 116590690 116590690 G C FAM160B1 Splice_Site p.X42_splice 0.41 TCGA-D5-6531-01 10 11805429 11805429 T G ECHDC3 Silent p.A266A 0.46 TCGA-D5-6531-01 10 118306908 118306908 A G PNLIP Missense_Mutation p.D50G 0.27 tolerated(0.1) benign(0.008) TCGA-D5-6531-01 10 127724791 127724791 G A ADAM12 Missense_Mutation p.P821L 0.08 deleterious(0) benign(0.341) TCGA-D5-6531-01 10 47000476 47000476 C A GPRIN2 3'UTR 0.06 TCGA-D5-6531-01 10 48373135 48373136 - A ZNF488 3'UTR 0.27 TCGA-D5-6531-01 10 49658980 49658980 C T ARHGAP22 Missense_Mutation p.G414R 0.43 tolerated(0.05) possibly_damaging(0.81) TCGA-D5-6531-01 10 7213921 7213921 G A SFMBT2 Missense_Mutation p.A784V 0.38 tolerated(0.39) benign(0.002) TCGA-D5-6531-01 10 73577214 73577214 C T PSAP Missense_Mutation p.R520H 0.35 tolerated(0.06) possibly_damaging(0.749) TCGA-D5-6531-01 10 76748853 76748853 G A KAT6B Missense_Mutation p.R871Q 0.12 probably_damaging(0.925) TCGA-D5-6531-01 10 98761032 98761032 C T SLIT1 Missense_Mutation p.R1481H 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6531-01 11 121323063 121323063 G T SORL1 Missense_Mutation p.R8M 0.31 tolerated_low_confidence(0.12) benign(0.002) TCGA-D5-6531-01 11 124267100 124267100 C T OR8B3 Missense_Mutation p.G50S 0.50 tolerated_low_confidence(0.19) benign(0.002) TCGA-D5-6531-01 11 17629884 17629884 C T OTOG Missense_Mutation p.R1412C 0.41 possibly_damaging(0.816) TCGA-D5-6531-01 11 20181690 20181690 C T DBX1 Missense_Mutation p.A61T 0.33 tolerated(0.13) benign(0.006) TCGA-D5-6531-01 11 3062148 3062148 C T CARS Missense_Mutation p.A145T 0.13 deleterious(0) possibly_damaging(0.746) TCGA-D5-6531-01 11 55655737 55655737 A T TRIM51 Missense_Mutation p.Q246L 0.43 tolerated(0.07) benign(0.128) TCGA-D5-6531-01 11 59132845 59132845 T C OR5AN1 Missense_Mutation p.L305S 0.53 tolerated(0.07) benign(0.027) TCGA-D5-6531-01 11 61100590 61100590 G A DDB1 5'UTR 0.57 TCGA-D5-6531-01 11 61727512 61727512 T A BEST1 Missense_Mutation p.I306N 0.33 deleterious(0) probably_damaging(0.934) TCGA-D5-6531-01 11 63681763 63681763 T G RCOR2 Silent p.G215G 0.29 TCGA-D5-6531-01 11 65746353 65746353 C T SART1 Silent p.I784I 0.48 TCGA-D5-6531-01 11 66252708 66252708 C T DPP3 Missense_Mutation p.T112I 0.34 deleterious(0) possibly_damaging(0.458) TCGA-D5-6531-01 11 67226141 67226141 G A CABP4 3'UTR 0.42 TCGA-D5-6531-01 11 70052330 70052330 C T FADD Silent p.I126I 0.45 TCGA-D5-6531-01 11 71939108 71939108 C A INPPL1 Intron 0.47 TCGA-D5-6531-01 11 73021903 73021903 G A ARHGEF17 Silent p.Q740Q 0.16 TCGA-D5-6531-01 11 76255575 76255575 G A C11orf30 Missense_Mutation p.M994I 0.14 tolerated_low_confidence(0.24) benign(0.38) TCGA-D5-6531-01 11 92534448 92534448 G A FAT3 Missense_Mutation p.V2757I 0.47 benign(0.002) TCGA-D5-6531-01 12 109949043 109949043 G A UBE3B Missense_Mutation p.D631N 0.39 deleterious(0.01) benign(0.017) TCGA-D5-6531-01 12 120613011 120613011 C T GCN1L1 Silent p.S349S 0.61 TCGA-D5-6531-01 12 123351799 123351799 G A VPS37B Missense_Mutation p.P241L 0.10 deleterious(0) probably_damaging(0.998) TCGA-D5-6531-01 12 15699369 15699369 A G PTPRO Intron 0.77 TCGA-D5-6531-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.61 deleterious(0.02) possibly_damaging(0.773) TCGA-D5-6531-01 12 49943980 49943980 C T KCNH3 Silent p.L596L 0.30 TCGA-D5-6531-01 12 52881871 52881871 C T KRT6A Missense_Mutation p.V481I 0.56 tolerated(0.14) benign(0.062) TCGA-D5-6531-01 12 56647150 56647150 G A ANKRD52 Missense_Mutation p.T341M 0.59 deleterious(0) probably_damaging(0.999) TCGA-D5-6531-01 12 57865619 57865619 G A GLI1 Silent p.Q1032Q 0.26 TCGA-D5-6531-01 12 68646552 68646552 C T IL22 Missense_Mutation p.G82R 0.43 deleterious(0.03) benign(0.275) TCGA-D5-6531-01 12 76425075 76425075 T G PHLDA1 Missense_Mutation p.K149N 0.18 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-D5-6531-01 12 82752548 82752548 G A METTL25 Silent p.E68E 0.61 TCGA-D5-6531-01 12 8990035 8990035 G C A2ML1 Splice_Site p.X243_splice 0.17 TCGA-D5-6531-01 12 99192733 99192733 T C ANKS1B Silent p.Q1082Q 0.10 TCGA-D5-6531-01 13 110802782 110802782 C T COL4A1 Silent p.T1646T 0.57 TCGA-D5-6531-01 13 111114731 111114731 C T COL4A2 Silent p.P592P 0.29 TCGA-D5-6531-01 13 112725541 112725541 G A SOX1 3'UTR 0.20 TCGA-D5-6531-01 13 36348802 36348802 C T DCLK1 Missense_Mutation p.D723N 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.741) TCGA-D5-6531-01 13 46553971 46553971 T A ZC3H13 Missense_Mutation p.D630V 0.22 probably_damaging(0.997) TCGA-D5-6531-01 13 93879618 93879618 C T GPC6 5'UTR 0.19 TCGA-D5-6531-01 13 96743480 96743480 C G HS6ST3 Missense_Mutation p.R122G 0.23 deleterious(0.04) possibly_damaging(0.721) TCGA-D5-6531-01 14 105612084 105612084 C T JAG2 Missense_Mutation p.R979H 0.48 deleterious(0.02) benign(0.004) TCGA-D5-6531-01 14 23549532 23549532 G A ACIN1 Nonsense_Mutation p.R396* 0.34 TCGA-D5-6531-01 14 55819028 55819028 G A FBXO34 Silent p.V640V 0.12 TCGA-D5-6531-01 14 70489958 70489958 G T SMOC1 Missense_Mutation p.R362L 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-D5-6531-01 14 71455399 71455399 C G PCNX Silent p.L809L 0.16 TCGA-D5-6531-01 14 86091863 86091863 A T FLRT2 3'UTR 0.36 TCGA-D5-6531-01 14 93649898 93649898 G A MOAP1 Silent p.V230V 0.20 TCGA-D5-6531-01 14 97010548 97010548 A C PAPOLA Missense_Mutation p.N451T 0.28 tolerated(0.08) benign(0.006) TCGA-D5-6531-01 15 101041964 101041964 G A CERS3 Missense_Mutation p.L31F 0.15 tolerated(0.53) possibly_damaging(0.835) TCGA-D5-6531-01 15 22743377 22743377 C T GOLGA6L1 Nonsense_Mutation p.R588* 0.26 TCGA-D5-6531-01 15 25959028 25959028 C T ATP10A Missense_Mutation p.V713M 0.79 deleterious(0) benign(0.049) TCGA-D5-6531-01 15 48713002 48713002 G A FBN1 Silent p.D2567D 0.06 TCGA-D5-6531-01 15 75714859 75714859 A G SIN3A Intron 0.17 TCGA-D5-6531-01 15 78398140 78398140 G A CIB2 Silent p.D161D 0.08 TCGA-D5-6531-01 15 86266482 86266482 G T AKAP13 Missense_Mutation p.D2230Y 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 16 1370722 1370722 C T UBE2I Intron 0.10 TCGA-D5-6531-01 16 15758648 15758648 G A NDE1 Missense_Mutation p.G5R 0.36 tolerated(0.06) benign(0.241) TCGA-D5-6531-01 16 29124392 29124392 C T RP11-426C22.5 5'Flank 0.30 TCGA-D5-6531-01 16 455025 455025 G A DECR2 Splice_Site p.X50_splice 0.33 TCGA-D5-6531-01 16 67424196 67424196 G A TPPP3 Missense_Mutation p.R138C 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-D5-6531-01 16 88014647 88014647 T C BANP Silent p.L26L 0.11 TCGA-D5-6531-01 17 10416195 10416195 G T MYH1 Missense_Mutation p.P298Q 0.68 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 17 12659801 12659801 C G MYOCD Missense_Mutation p.S710C 0.61 tolerated(0.1) benign(0.007) TCGA-D5-6531-01 17 20224654 20224654 C T AC004702.2 Intron 0.71 TCGA-D5-6531-01 17 40117174 40117174 C T CNP 5'Flank 0.54 TCGA-D5-6531-01 17 44108839 44108839 C T KANSL1 3'UTR 0.33 TCGA-D5-6531-01 17 61973104 61973104 G A CSH1 Missense_Mutation p.T93M 0.23 tolerated(0.08) benign(0.223) TCGA-D5-6531-01 17 67020444 67020444 T C ABCA9 Missense_Mutation p.K731R 0.54 tolerated(0.21) benign(0.049) TCGA-D5-6531-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.67 tolerated(0.13) possibly_damaging(0.631) TCGA-D5-6531-01 18 21759752 21759752 C T OSBPL1A Silent p.R620R 0.12 TCGA-D5-6531-01 18 6080901 6080901 C G L3MBTL4 Missense_Mutation p.D475H 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6531-01 18 77496468 77496468 G A CTDP1 Silent p.T898T 0.18 TCGA-D5-6531-01 18 77918080 77918080 C A PARD6G Missense_Mutation p.M235I 0.25 deleterious(0) possibly_damaging(0.88) TCGA-D5-6531-01 18 8638248 8638248 C T RAB12 Silent p.V241V 0.12 TCGA-D5-6531-01 19 11978527 11978527 A T ZNF439 Nonsense_Mutation p.K215* 0.18 TCGA-D5-6531-01 19 15905260 15905260 G A OR10H5 Silent p.V134V 0.34 TCGA-D5-6531-01 19 19758516 19758516 C T ATP13A1 Silent p.R895R 0.36 TCGA-D5-6531-01 19 40928678 40928678 C T SERTAD1 3'UTR 0.24 TCGA-D5-6531-01 19 42584320 42584320 G A ZNF574 Missense_Mutation p.R521Q 0.39 deleterious(0) possibly_damaging(0.857) TCGA-D5-6531-01 19 51955826 51955826 G A SIGLEC8 Missense_Mutation p.A436V 0.35 tolerated(0.1) possibly_damaging(0.714) TCGA-D5-6531-01 19 52660348 52660348 C A ZNF836 Missense_Mutation p.E196D 0.25 tolerated(0.19) benign(0.013) TCGA-D5-6531-01 19 53015169 53015169 A C ZNF578 Missense_Mutation p.K512T 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-D5-6531-01 19 53046535 53046535 C G ZNF808 5'UTR 0.40 TCGA-D5-6531-01 19 54598293 54598293 G A OSCAR 3'UTR 0.29 TCGA-D5-6531-01 19 54726215 54726215 C T LILRB3 Missense_Mutation p.R97H 0.23 tolerated(0.39) benign(0.109) TCGA-D5-6531-01 19 5613476 5613476 C T SAFB2 Silent p.P202P 0.38 TCGA-D5-6531-01 19 57335801 57335801 A C PEG3 Missense_Mutation p.L75V 0.47 deleterious(0) probably_damaging(0.914) TCGA-D5-6531-01 19 58549419 58549419 G A ZSCAN1 Missense_Mutation p.R72H 0.41 tolerated(0.92) benign(0.002) TCGA-D5-6531-01 19 58863691 58863691 C T A1BG Missense_Mutation p.A191T 0.32 tolerated(0.64) benign(0.014) TCGA-D5-6531-01 19 6002738 6002738 G A RFX2 Silent p.N548N 0.41 TCGA-D5-6531-01 19 6380465 6380465 G A GTF2F1 Missense_Mutation p.R461C 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-D5-6531-01 19 7698404 7698404 C T PCP2 5'UTR 0.11 TCGA-D5-6531-01 19 8387216 8387216 T - RPS28 3'UTR 0.25 TCGA-D5-6531-01 19 9204695 9204695 T A OR1M1 Missense_Mutation p.Y259N 0.47 deleterious(0) probably_damaging(0.999) TCGA-D5-6531-01 1 109544891 109544893 TCC - WDR47 In_Frame_Del p.E470del 0.30 TCGA-D5-6531-01 1 110709686 110709686 C A SLC6A17 Silent p.G45G 0.28 TCGA-D5-6531-01 1 12786079 12786079 T C AADACL3 3'Flank 0.47 TCGA-D5-6531-01 1 12907701 12907708 GACGTTGA TGCGCTGG HNRNPCL1 Missense_Mutation p.L148I 0.12 TCGA-D5-6531-01 1 146658790 146658790 C - FMO5 Frame_Shift_Del p.D431Tfs*3 0.28 TCGA-D5-6531-01 1 1469705 1469705 G A ATAD3A 3'UTR 0.38 TCGA-D5-6531-01 1 149900803 149900803 C A MTMR11 3'UTR 0.38 TCGA-D5-6531-01 1 150443621 150443622 CC - RPRD2 Frame_Shift_Del p.P733Hfs*4 0.31 TCGA-D5-6531-01 1 157804322 157804322 C T CD5L Missense_Mutation p.R198Q 0.34 tolerated(1) benign(0.001) TCGA-D5-6531-01 1 162724631 162724631 C T DDR2 Missense_Mutation p.R135C 0.26 deleterious(0) probably_damaging(0.996) TCGA-D5-6531-01 1 164781257 164781257 C T PBX1 Missense_Mutation p.R290W 0.31 deleterious(0.01) probably_damaging(1) TCGA-D5-6531-01 1 17033828 17033828 G A ESPNP RNA 0.03 TCGA-D5-6531-01 1 176903465 176903465 C A ASTN1 Missense_Mutation p.A832S 0.57 deleterious(0.01) probably_damaging(0.996) TCGA-D5-6531-01 1 196871677 196871679 CTT - CFHR4 In_Frame_Del p.S63del 0.23 TCGA-D5-6531-01 1 204956563 204956563 C T NFASC Missense_Mutation p.R830C 0.20 deleterious(0.01) probably_damaging(0.931) TCGA-D5-6531-01 1 2106722 2106722 C T PRKCZ Silent p.H515H 0.38 TCGA-D5-6531-01 1 212798488 212798488 G A FAM71A Missense_Mutation p.R90Q 0.43 deleterious(0.02) probably_damaging(0.931) TCGA-D5-6531-01 1 245849102 245849102 C T KIF26B Silent p.S939S 0.35 TCGA-D5-6531-01 1 247921010 247921010 G T OR1C1 Silent p.G233G 0.27 TCGA-D5-6531-01 1 38187739 38187739 G T EPHA10 Intron 0.32 TCGA-D5-6531-01 1 39914374 39914374 G C MACF1 Missense_Mutation p.D4674H 0.14 probably_damaging(1) TCGA-D5-6531-01 1 39991358 39991358 G C BMP8A Missense_Mutation p.C366S 0.61 deleterious(0.02) probably_damaging(0.987) TCGA-D5-6531-01 1 42050226 42050226 G T HIVEP3 Silent p.P81P 0.25 TCGA-D5-6531-01 1 44437877 44437877 G A DPH2 Missense_Mutation p.E406K 0.27 tolerated(0.07) benign(0.017) TCGA-D5-6531-01 1 6038428 6038428 A T NPHP4 Missense_Mutation p.S61T 0.44 tolerated(0.39) benign(0.247) TCGA-D5-6531-01 1 7724825 7724825 G A CAMTA1 Missense_Mutation p.V740M 0.43 tolerated_low_confidence(0.46) benign(0.013) TCGA-D5-6531-01 20 21309225 21309225 G A XRN2 Missense_Mutation p.R115H 0.27 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 20 2998495 2998495 G A PTPRA Missense_Mutation p.R326Q 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 20 30584797 30584797 C T XKR7 Missense_Mutation p.A426V 0.63 tolerated(0.78) probably_damaging(1) TCGA-D5-6531-01 20 33839763 33839763 C T MMP24 Missense_Mutation p.R151W 0.63 deleterious(0.02) possibly_damaging(0.642) TCGA-D5-6531-01 20 35060160 35060160 G A DLGAP4 Missense_Mutation p.D14N 0.25 tolerated(0.09) possibly_damaging(0.711) TCGA-D5-6531-01 20 44693822 44693822 C T NCOA5 Missense_Mutation p.M225I 0.12 tolerated(0.13) possibly_damaging(0.864) TCGA-D5-6531-01 20 47262563 47262563 C T PREX1 Missense_Mutation p.G1113D 0.59 tolerated_low_confidence(0.15) benign(0.001) TCGA-D5-6531-01 20 4880277 4880277 C A SLC23A2 Missense_Mutation p.A136S 0.20 tolerated(0.17) probably_damaging(0.949) TCGA-D5-6531-01 21 11038930 11038930 G T BAGE2 RNA 0.10 TCGA-D5-6531-01 21 17196450 17196450 C A USP25 Missense_Mutation p.N391K 0.42 tolerated(0.28) possibly_damaging(0.728) TCGA-D5-6531-01 21 31311853 31311853 C T GRIK1 5'UTR 0.43 TCGA-D5-6531-01 21 31988826 31988826 G T KRTAP20-1 Missense_Mutation p.C18F 0.44 unknown(0) TCGA-D5-6531-01 21 41711123 41711123 C T DSCAM Missense_Mutation p.R477Q 0.35 tolerated(0.2) benign(0.124) TCGA-D5-6531-01 21 46012357 46012357 C T KRTAP10-6 Silent p.A3A 0.32 TCGA-D5-6531-01 22 17083064 17083064 G A TPTEP1 RNA 0.65 TCGA-D5-6531-01 22 18918576 18918576 C A PRODH Missense_Mutation p.G137C 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 22 20100236 20100236 C G TRMT2A Missense_Mutation p.Q576H 0.31 tolerated(0.51) benign(0.023) TCGA-D5-6531-01 22 21562363 21562363 T G GGT2 3'UTR 0.26 TCGA-D5-6531-01 22 30866204 30866204 G A SEC14L3 Missense_Mutation p.R57C 0.36 deleterious(0) possibly_damaging(0.748) TCGA-D5-6531-01 22 35695918 35695918 A C TOM1 5'UTR 0.39 TCGA-D5-6531-01 2 1204899 1204899 C T SNTG2 Silent p.A234A 0.53 TCGA-D5-6531-01 2 160889514 160889514 G A PLA2R1 Missense_Mutation p.T266M 0.04 deleterious(0.04) possibly_damaging(0.505) TCGA-D5-6531-01 2 1684062 1684062 C T PXDN Silent p.A211A 0.33 TCGA-D5-6531-01 2 179554309 179554309 C A TTN Missense_Mutation p.Q10620H 0.48 TCGA-D5-6531-01 2 187540582 187540582 G A ITGAV Silent p.S952S 0.15 TCGA-D5-6531-01 2 206165345 206165345 G T PARD3B Missense_Mutation p.K697N 0.50 deleterious(0.03) probably_damaging(0.987) TCGA-D5-6531-01 2 209271736 209271736 G T PTH2R 5'UTR 0.48 TCGA-D5-6531-01 2 215301398 215301398 C A VWC2L Missense_Mutation p.H146N 0.15 tolerated(0.27) possibly_damaging(0.641) TCGA-D5-6531-01 2 218682787 218682787 C T TNS1 Missense_Mutation p.R1319Q 0.39 deleterious(0.01) benign(0.023) TCGA-D5-6531-01 2 27275864 27275864 G A AGBL5 Missense_Mutation p.R13H 0.43 deleterious(0.02) possibly_damaging(0.608) TCGA-D5-6531-01 2 29293528 29293528 A T C2orf71 Silent p.G1200G 0.48 TCGA-D5-6531-01 2 38811054 38811054 A T HNRNPLL Silent p.T182T 0.33 TCGA-D5-6531-01 2 40657042 40657042 C A SLC8A1 Missense_Mutation p.V127L 0.28 deleterious(0) possibly_damaging(0.79) TCGA-D5-6531-01 2 45236105 45236105 C T SIX2 Missense_Mutation p.V49M 0.52 deleterious(0) probably_damaging(0.978) TCGA-D5-6531-01 2 66662869 66662869 G A MEIS1 5'UTR 0.53 TCGA-D5-6531-01 2 9637326 9637329 CAAA - ADAM17 Frame_Shift_Del p.V566Afs*58 0.39 TCGA-D5-6531-01 3 122631760 122631760 G T SEMA5B Silent p.P939P 0.49 TCGA-D5-6531-01 3 123332784 123332784 C T MYLK 3'UTR 0.41 TCGA-D5-6531-01 3 19559565 19559565 A T KCNH8 Missense_Mutation p.E873V 0.27 deleterious(0) possibly_damaging(0.894) TCGA-D5-6531-01 3 53855728 53855728 C T CHDH Missense_Mutation p.G311R 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 3 57357543 57357543 G T DNAH12 Silent p.T126T 0.68 TCGA-D5-6531-01 3 71830621 71830621 A G PROK2 Silent p.R73R 0.29 TCGA-D5-6531-01 4 108566080 108566080 C T PAPSS1 Missense_Mutation p.D462N 0.32 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 4 119948389 119948389 G A SYNPO2 Missense_Mutation p.D289N 0.27 tolerated(0.07) benign(0.062) TCGA-D5-6531-01 4 142949749 142949749 T G INPP4B 3'UTR 0.28 TCGA-D5-6531-01 4 153245446 153245446 G A FBXW7 Missense_Mutation p.S582L 0.41 tolerated(0.15) probably_damaging(0.996) TCGA-D5-6531-01 4 153250898 153250899 - T FBXW7 Frame_Shift_Ins p.Q388Tfs*5 0.28 TCGA-D5-6531-01 4 154541936 154541936 T G KIAA0922 Missense_Mutation p.L1199R 0.39 tolerated(0.13) possibly_damaging(0.8) TCGA-D5-6531-01 4 177098785 177098785 C T WDR17 Missense_Mutation p.L1277F 0.19 tolerated(0.45) benign(0.021) TCGA-D5-6531-01 4 20729059 20729059 C T PACRGL 3'UTR 0.38 TCGA-D5-6531-01 4 4228340 4228340 G A OTOP1 Silent p.A84A 0.13 TCGA-D5-6531-01 4 4304524 4304524 G T ZBTB49 Missense_Mutation p.A321S 0.24 deleterious(0.04) possibly_damaging(0.745) TCGA-D5-6531-01 4 5642510 5642510 G T EVC2 Missense_Mutation p.Q401K 0.39 deleterious(0.03) probably_damaging(0.913) TCGA-D5-6531-01 4 66230870 66230870 C T EPHA5 Missense_Mutation p.E701K 0.17 deleterious(0) probably_damaging(0.969) TCGA-D5-6531-01 4 75938015 75938015 G A PARM1 Missense_Mutation p.A142T 0.34 tolerated(0.24) benign(0.018) TCGA-D5-6531-01 4 77662974 77662974 C T SHROOM3 Silent p.A1216A 0.42 TCGA-D5-6531-01 4 79385718 79385718 C T FRAS1 Missense_Mutation p.A2337V 0.31 possibly_damaging(0.866) TCGA-D5-6531-01 5 131329861 131329861 G T ACSL6 Missense_Mutation p.Q45K 0.11 deleterious(0.04) possibly_damaging(0.64) TCGA-D5-6531-01 5 140222730 140222730 G A PCDHA8 Silent p.S608S 0.89 TCGA-D5-6531-01 5 140348112 140348112 G A PCDHAC2 Silent p.S587S 0.12 TCGA-D5-6531-01 5 140480941 140480941 C T PCDHB3 Silent p.N236N 0.17 TCGA-D5-6531-01 5 140564936 140564936 A G PCDHB16 3'UTR 0.23 TCGA-D5-6531-01 5 140788497 140788497 G T PCDHGB6 Missense_Mutation p.S243I 0.26 deleterious(0.02) benign(0.103) TCGA-D5-6531-01 5 149431679 149431679 G T HMGXB3 Missense_Mutation p.R1268L 0.86 deleterious(0) probably_damaging(0.999) TCGA-D5-6531-01 5 151304302 151304302 G A GLRA1 5'UTR 0.85 TCGA-D5-6531-01 5 15928283 15928283 G A FBXL7 Missense_Mutation p.A138T 0.37 deleterious(0) probably_damaging(0.994) TCGA-D5-6531-01 5 168093483 168093483 C G SLIT3 Missense_Mutation p.E1516D 0.79 deleterious(0.03) probably_damaging(0.991) TCGA-D5-6531-01 5 169477296 169477296 C T DOCK2 Nonsense_Mutation p.R1370* 0.17 TCGA-D5-6531-01 5 170736540 170736540 G A TLX3 Silent p.P57P 0.58 TCGA-D5-6531-01 5 172535681 172535681 G A CREBRF Missense_Mutation p.R426Q 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-D5-6531-01 5 175816510 175816510 G C HIGD2A 3'UTR 0.13 TCGA-D5-6531-01 5 179078953 179078953 C A AC136604.1 Missense_Mutation p.P146T 0.13 tolerated(0.13) possibly_damaging(0.803) TCGA-D5-6531-01 5 251529 251529 C G SDHA Nonsense_Mutation p.Y580* 0.49 TCGA-D5-6531-01 5 31323283 31323283 G A CDH6 Silent p.A747A 0.46 TCGA-D5-6531-01 5 34936250 34936250 G A DNAJC21 Missense_Mutation p.G106E 0.08 deleterious(0) probably_damaging(0.996) TCGA-D5-6531-01 5 3596463 3596463 T A IRX1 Missense_Mutation p.Y82N 0.12 deleterious(0) benign(0.137) TCGA-D5-6531-01 5 5237142 5237142 C A ADAMTS16 Nonsense_Mutation p.S695* 0.33 TCGA-D5-6531-01 5 5303446 5303446 T A ADAMTS16 Missense_Mutation p.V952E 0.18 deleterious(0.02) probably_damaging(0.931) TCGA-D5-6531-01 5 56219741 56219741 C T MIER3 Splice_Site p.X350_splice 0.09 TCGA-D5-6531-01 5 67589207 67589224 AGTTCTGTGGTTGAATTA - PIK3R1 In_Frame_Del p.S399_L404del 0.69 TCGA-D5-6531-01 6 139581511 139581511 G T TXLNB Missense_Mutation p.Q316K 0.17 deleterious(0) probably_damaging(0.954) TCGA-D5-6531-01 6 149699424 149699424 G A TAB2 Missense_Mutation p.E125K 0.18 deleterious(0) probably_damaging(0.99) TCGA-D5-6531-01 6 152464808 152464808 G A SYNE1 Missense_Mutation p.R8357C 0.15 possibly_damaging(0.582) TCGA-D5-6531-01 6 152469351 152469351 G A SYNE1 Missense_Mutation p.R8269W 0.62 probably_damaging(0.973) TCGA-D5-6531-01 6 155581435 155581435 G A TFB1M Nonsense_Mutation p.R256* 0.17 TCGA-D5-6531-01 6 161015143 161015143 G A LPA Missense_Mutation p.T1159M 0.56 tolerated(0.13) probably_damaging(0.996) TCGA-D5-6531-01 6 168842133 168842133 C T SMOC2 Missense_Mutation p.T28M 0.17 tolerated(0.11) benign(0.27) TCGA-D5-6531-01 6 170144179 170144179 G T TCTE3 Silent p.V104V 0.57 TCGA-D5-6531-01 6 27115422 27115422 C G HIST1H2AH 3'Flank 0.42 TCGA-D5-6531-01 6 27792116 27792134 ACCTATACAGAGCACGCCA - HIST1H4J Frame_Shift_Del p.T72Sfs*? 0.35 TCGA-D5-6531-01 6 33423329 33423329 G A ZBTB9 Missense_Mutation p.R151H 0.19 tolerated(0.08) benign(0.003) TCGA-D5-6531-01 6 35965626 35965626 C T SLC26A8 Silent p.L172L 0.54 TCGA-D5-6531-01 6 39024213 39024213 G A GLP1R Missense_Mutation p.R40Q 0.58 tolerated(0.08) benign(0.046) TCGA-D5-6531-01 6 75947700 75947700 T C COX7A2 Silent p.T98T 0.10 TCGA-D5-6531-01 7 12443373 12443373 C T VWDE 5'UTR 0.17 TCGA-D5-6531-01 7 128444799 128444799 G A CCDC136 Missense_Mutation p.D256N 0.43 tolerated(0.12) benign(0.043) TCGA-D5-6531-01 7 138758709 138758709 G A ZC3HAV1 Missense_Mutation p.L589F 0.35 deleterious(0.01) possibly_damaging(0.521) TCGA-D5-6531-01 7 147259309 147259309 C T CNTNAP2 Silent p.S619S 0.53 TCGA-D5-6531-01 7 148876586 148876586 G A ZNF398 Missense_Mutation p.C541Y 0.06 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 7 40789090 40789090 G A SUGCT Missense_Mutation p.V416I 0.04 tolerated(0.19) benign(0.02) TCGA-D5-6531-01 7 4189088 4189088 G A SDK1 Missense_Mutation p.V1540I 0.42 tolerated(0.21) benign(0.084) TCGA-D5-6531-01 7 42005066 42005066 T G GLI3 Missense_Mutation p.Q1202P 0.55 deleterious_low_confidence(0) benign(0.432) TCGA-D5-6531-01 7 50459438 50459438 G A IKZF1 Missense_Mutation p.E201K 0.10 deleterious(0.05) benign(0.03) TCGA-D5-6531-01 7 6662240 6662240 C T ZNF853 Missense_Mutation p.P540S 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-D5-6531-01 7 86416141 86416141 A C GRM3 Missense_Mutation p.N345H 0.24 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 7 86416142 86416142 A T GRM3 Missense_Mutation p.N345I 0.24 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 7 87060835 87060835 G A ABCB4 Missense_Mutation p.T593M 0.48 deleterious(0) probably_damaging(0.981) TCGA-D5-6531-01 8 107782449 107782449 C G ABRA 5'UTR 0.17 TCGA-D5-6531-01 8 114448923 114448923 G A CSMD3 Missense_Mutation p.T54M 0.15 tolerated_low_confidence(0.29) benign(0) TCGA-D5-6531-01 8 116617112 116617112 C T TRPS1 Missense_Mutation p.E362K 0.29 deleterious_low_confidence(0) possibly_damaging(0.729) TCGA-D5-6531-01 8 125988718 125988718 G T ZNF572 Nonsense_Mutation p.E70* 0.57 TCGA-D5-6531-01 8 126096122 126096122 C T KIAA0196 Missense_Mutation p.E7K 0.54 deleterious(0.02) benign(0.039) TCGA-D5-6531-01 8 128753146 128753146 G A MYC Missense_Mutation p.R436Q 0.35 tolerated(0.46) benign(0.015) TCGA-D5-6531-01 8 133144498 133144498 C T KCNQ3 Missense_Mutation p.V605I 0.28 tolerated(0.18) benign(0.006) TCGA-D5-6531-01 8 133771138 133771138 G A TMEM71 5'UTR 0.51 TCGA-D5-6531-01 8 139601522 139601522 G A COL22A1 Missense_Mutation p.R1619W 0.31 unknown(0) TCGA-D5-6531-01 8 25159899 25159899 G A DOCK5 Missense_Mutation p.R302H 0.50 deleterious(0) possibly_damaging(0.87) TCGA-D5-6531-01 8 39131866 39131866 G T ADAM32 Missense_Mutation p.S746I 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.655) TCGA-D5-6531-01 8 52321295 52321295 C T PXDNL Silent p.E963E 0.43 TCGA-D5-6531-01 8 68200237 68200237 T C ARFGEF1 Missense_Mutation p.D327G 0.23 tolerated(0.28) benign(0.044) TCGA-D5-6531-01 8 79645731 79645731 T C IL7 3'UTR 0.28 TCGA-D5-6531-01 8 87899819 87899819 C T CNBD1 Silent p.C46C 0.37 TCGA-D5-6531-01 9 104499913 104499913 C T GRIN3A Missense_Mutation p.A117T 0.73 tolerated_low_confidence(0.23) benign(0.003) TCGA-D5-6531-01 9 110045895 110045895 G A RAD23B 5'UTR 0.29 TCGA-D5-6531-01 9 132662357 132662357 T C FNBP1 Missense_Mutation p.E525G 0.12 deleterious(0.05) benign(0.089) TCGA-D5-6531-01 9 134340297 134340297 C T PRRC2B Missense_Mutation p.R518W 0.19 deleterious(0) probably_damaging(0.999) TCGA-D5-6531-01 9 138516382 138516382 G A GLT6D1 Missense_Mutation p.T131M 0.74 deleterious(0.02) possibly_damaging(0.531) TCGA-D5-6531-01 9 138664684 138664684 C T KCNT1 Missense_Mutation p.A711V 0.15 deleterious(0.01) benign(0.409) TCGA-D5-6531-01 9 27109409 27109409 T A TEK 5'UTR 0.06 TCGA-D5-6531-01 9 2718773 2718773 C T KCNV2 Missense_Mutation p.P345L 0.18 deleterious(0) probably_damaging(1) TCGA-D5-6531-01 9 84531717 84531717 A G SPATA31D5P RNA 0.16 TCGA-D5-6531-01 X 148039945 148039945 T C AFF2 Missense_Mutation p.C883R 0.52 deleterious(0) probably_damaging(0.998) TCGA-D5-6531-01 X 54099642 54099642 C T FAM120C Missense_Mutation p.A1039T 0.17 tolerated_low_confidence(1) benign(0.001) TCGA-D5-6531-01 X 78011249 78011249 A T LPAR4 Missense_Mutation p.I295F 0.12 deleterious(0) probably_damaging(0.992) TCGA-D5-6532-01 10 102045889 102045889 G T BLOC1S2 Missense_Mutation p.S46Y 0.71 deleterious(0.01) probably_damaging(0.949) TCGA-D5-6532-01 10 60148475 60148475 G C TFAM Missense_Mutation p.E113Q 0.34 tolerated(0.31) benign(0.069) TCGA-D5-6532-01 10 7230587 7230587 T A SFMBT2 Nonsense_Mutation p.K603* 0.39 TCGA-D5-6532-01 10 96796955 96796955 T C CYP2C8 Missense_Mutation p.N468S 0.62 deleterious(0.04) benign(0.002) TCGA-D5-6532-01 10 98064311 98064311 G A DNTT Silent p.T19T 0.60 TCGA-D5-6532-01 11 10500213 10500213 C T AMPD3 Missense_Mutation p.T130M 0.44 tolerated(0.13) benign(0.001) TCGA-D5-6532-01 11 111750060 111750060 T C C11orf1 5'UTR 0.36 TCGA-D5-6532-01 11 116968933 116968933 C T SIK3 Missense_Mutation p.E9K 0.15 deleterious(0.04) benign(0.183) TCGA-D5-6532-01 11 124252694 124252694 G T OR8B2 Silent p.L182L 0.08 TCGA-D5-6532-01 11 18456371 18456371 C G LDHC Missense_Mutation p.A168G 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6532-01 11 46700963 46700963 G A ARHGAP1 Silent p.P361P 0.35 TCGA-D5-6532-01 11 47360216 47360216 G A MYBPC3 Silent p.T721T 0.46 TCGA-D5-6532-01 11 533308 533308 C T HRAS Intron 0.33 TCGA-D5-6532-01 11 56258226 56258226 A C OR5M8 Silent p.S207S 0.19 TCGA-D5-6532-01 11 56409031 56409031 G A OR5AP2 Silent p.I295I 0.35 TCGA-D5-6532-01 11 71943749 71943749 C T INPPL1 Missense_Mutation p.R598C 0.41 deleterious(0) probably_damaging(0.999) TCGA-D5-6532-01 11 72947001 72947001 G A P2RY2 3'UTR 0.43 TCGA-D5-6532-01 11 73584500 73584500 A C COA4 Intron 0.16 TCGA-D5-6532-01 11 83344364 83344364 G A DLG2 Silent p.Y610Y 0.38 TCGA-D5-6532-01 12 101603597 101603597 G A SLC5A8 Silent p.F10F 0.39 TCGA-D5-6532-01 12 131623811 131623811 C T GPR133 3'UTR 0.38 TCGA-D5-6532-01 12 18233966 18233966 T C RERGL 3'UTR 0.16 TCGA-D5-6532-01 12 1984446 1984446 C A CACNA2D4 Nonsense_Mutation p.E593* 0.75 TCGA-D5-6532-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.48 deleterious(0.04) possibly_damaging(0.506) TCGA-D5-6532-01 12 40688680 40688680 C T LRRK2 Nonsense_Mutation p.R948* 0.34 TCGA-D5-6532-01 12 56346682 56346682 C T DGKA Silent p.I636I 0.42 TCGA-D5-6532-01 12 6562874 6562874 G A TAPBPL Missense_Mutation p.R186Q 0.25 tolerated(0.4) benign(0.004) TCGA-D5-6532-01 12 96312693 96312693 G C CCDC38 Silent p.L33L 0.43 TCGA-D5-6532-01 13 21306050 21306050 C T N6AMT2 Silent p.S146S 0.50 TCGA-D5-6532-01 13 30423746 30423746 G A UBL3 5'UTR 0.07 TCGA-D5-6532-01 13 36413248 36413248 C A DCLK1 Missense_Mutation p.E367D 0.14 tolerated(0.34) benign(0.388) TCGA-D5-6532-01 13 96622441 96622441 C G UGGT2 Missense_Mutation p.M420I 0.43 tolerated(0.59) benign(0) TCGA-D5-6532-01 14 42356424 42356424 G A LRFN5 Missense_Mutation p.R199Q 0.64 deleterious(0) probably_damaging(1) TCGA-D5-6532-01 15 25601194 25601194 G A UBE3A Nonsense_Mutation p.Q660* 0.34 TCGA-D5-6532-01 15 29385301 29385301 G T APBA2 Missense_Mutation p.D365Y 0.35 deleterious(0) probably_damaging(0.928) TCGA-D5-6532-01 15 48892423 48892423 A C FBN1 Missense_Mutation p.C119G 0.17 probably_damaging(0.986) TCGA-D5-6532-01 15 52667577 52667577 T A MYO5A Missense_Mutation p.Y834F 0.35 tolerated(0.24) benign(0.253) TCGA-D5-6532-01 15 56387637 56387637 A C RFX7 Missense_Mutation p.S763R 0.35 deleterious_low_confidence(0.04) benign(0.1) TCGA-D5-6532-01 15 74363957 74363957 G A GOLGA6A Missense_Mutation p.T545M 0.17 deleterious(0.05) benign(0.053) TCGA-D5-6532-01 15 90167475 90167475 T C TICRR Missense_Mutation p.F1312L 0.08 tolerated(0.58) benign(0.002) TCGA-D5-6532-01 15 91545373 91545373 G A VPS33B Nonsense_Mutation p.R438* 0.35 TCGA-D5-6532-01 16 13329125 13329125 C G SHISA9 Silent p.L378L 0.29 TCGA-D5-6532-01 16 2338282 2338282 C T ABCA3 Missense_Mutation p.A917T 0.39 tolerated(0.77) benign(0) TCGA-D5-6532-01 16 31434922 31434922 C G ITGAD Missense_Mutation p.P1000A 0.23 deleterious(0.03) possibly_damaging(0.818) TCGA-D5-6532-01 16 66995172 66995172 C A CES3 5'UTR 0.28 TCGA-D5-6532-01 16 9984851 9984851 A G GRIN2A Missense_Mutation p.W372R 0.49 deleterious(0) probably_damaging(1) TCGA-D5-6532-01 17 3840822 3840822 C G ATP2A3 Missense_Mutation p.D737H 0.68 deleterious(0) probably_damaging(1) TCGA-D5-6532-01 17 43481984 43481984 G A ARHGAP27 Nonsense_Mutation p.R97* 0.23 TCGA-D5-6532-01 17 45452301 45452301 G T EFCAB13 Silent p.S447S 0.25 TCGA-D5-6532-01 17 4997676 4997677 - T ZFP3 3'UTR 0.37 TCGA-D5-6532-01 17 67016725 67016725 T G ABCA9 Missense_Mutation p.I802L 0.41 tolerated(0.56) benign(0.002) TCGA-D5-6532-01 17 72613419 72613419 C T CD300E Missense_Mutation p.V76M 0.03 deleterious(0.02) probably_damaging(0.986) TCGA-D5-6532-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.57 tolerated(0.11) benign(0.308) TCGA-D5-6532-01 17 79952696 79952696 G T ASPSCR1 Splice_Site p.X125_splice 0.20 TCGA-D5-6532-01 18 31319522 31319522 G A ASXL3 Silent p.P718P 0.60 TCGA-D5-6532-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.47 deleterious(0) probably_damaging(1) TCGA-D5-6532-01 19 10479053 10479053 C T TYK2 Missense_Mutation p.A79T 0.06 tolerated(0.27) benign(0.005) TCGA-D5-6532-01 19 12500983 12500983 C T ZNF799 3'UTR 0.24 TCGA-D5-6532-01 19 23543727 23543727 G A ZNF91 Missense_Mutation p.P685L 0.21 tolerated(0.06) probably_damaging(0.993) TCGA-D5-6532-01 19 2796032 2796032 C T THOP1 Intron 0.44 TCGA-D5-6532-01 19 4171822 4171822 G A CREB3L3 Silent p.S414S 0.39 TCGA-D5-6532-01 19 54783337 54783337 C T LILRB2 Missense_Mutation p.R174H 0.44 tolerated(0.56) benign(0.006) TCGA-D5-6532-01 19 56030196 56030196 G A SSC5D Missense_Mutation p.R1518H 0.45 unknown(0) TCGA-D5-6532-01 19 56735184 56735184 C T ZSCAN5A Missense_Mutation p.G135E 0.42 deleterious(0) possibly_damaging(0.642) TCGA-D5-6532-01 19 58319999 58319999 A G ZNF552 Silent p.H211H 0.38 TCGA-D5-6532-01 19 8807880 8807880 C T ACTL9 Missense_Mutation p.R391H 0.39 tolerated(0.12) benign(0.005) TCGA-D5-6532-01 19 8976296 8976296 A C MUC16 Missense_Mutation p.F14178V 0.14 possibly_damaging(0.789) TCGA-D5-6532-01 1 118570907 118570907 T G SPAG17 Missense_Mutation p.Q1240H 0.14 tolerated(0.06) benign(0.259) TCGA-D5-6532-01 1 14106825 14106825 A G PRDM2 Silent p.E845E 0.32 TCGA-D5-6532-01 1 171072991 171072991 G T FMO3 Missense_Mutation p.M66I 0.35 deleterious(0.01) probably_damaging(0.95) TCGA-D5-6532-01 1 19410998 19410998 G A UBR4 Missense_Mutation p.T5003I 0.42 probably_damaging(0.992) TCGA-D5-6532-01 1 201780799 201780799 C T NAV1 Silent p.P1622P 0.38 TCGA-D5-6532-01 1 204978744 204978744 G A NFASC Missense_Mutation p.A1117T 0.08 deleterious(0) unknown(0) TCGA-D5-6532-01 1 236767302 236767302 C G HEATR1 Missense_Mutation p.D32H 0.32 deleterious(0.03) benign(0.347) TCGA-D5-6532-01 1 242253162 242253162 G A PLD5 Silent p.N535N 0.36 TCGA-D5-6532-01 1 26663087 26663087 C T AIM1L Intron 0.10 TCGA-D5-6532-01 1 3328441 3328441 C T PRDM16 Silent p.S560S 0.53 TCGA-D5-6532-01 1 75229620 75229620 G T TYW3 Missense_Mutation p.M201I 0.36 tolerated(0.48) benign(0) TCGA-D5-6532-01 1 85787215 85787215 C T DDAH1 Missense_Mutation p.V260M 0.07 deleterious(0.03) benign(0.141) TCGA-D5-6532-01 20 31573704 31573704 G A SUN5 Silent p.N245N 0.22 TCGA-D5-6532-01 20 34214658 34214658 A G CPNE1 Missense_Mutation p.V440A 0.16 deleterious(0) possibly_damaging(0.791) TCGA-D5-6532-01 20 34214666 34214666 A T CPNE1 Silent p.R437R 0.16 TCGA-D5-6532-01 20 36322431 36322431 C T CTNNBL1 5'UTR 0.29 TCGA-D5-6532-01 20 42087089 42087089 A G SRSF6 Missense_Mutation p.I66V 0.13 tolerated(0.22) benign(0.086) TCGA-D5-6532-01 20 47989981 47989981 C T KCNB1 Missense_Mutation p.A706T 0.29 tolerated_low_confidence(0.8) benign(0.168) TCGA-D5-6532-01 20 8713904 8713904 T C PLCB1 Silent p.N636N 0.38 TCGA-D5-6532-01 21 34950614 34950614 C T DONSON Silent p.%3D 0.33 TCGA-D5-6532-01 22 23915550 23915550 G A IGLL1 Missense_Mutation p.T182M 0.44 tolerated_low_confidence(0.14) benign(0.31) TCGA-D5-6532-01 22 29752583 29752583 G A AP1B1 Missense_Mutation p.A183V 0.48 deleterious(0) benign(0.124) TCGA-D5-6532-01 22 32150899 32150899 C T DEPDC5 5'UTR 0.35 TCGA-D5-6532-01 22 40036989 40036989 C A CACNA1I Silent p.L286L 0.20 TCGA-D5-6532-01 22 50599147 50599147 G T MOV10L1 Missense_Mutation p.D1119Y 0.33 deleterious(0) possibly_damaging(0.871) TCGA-D5-6532-01 2 119732103 119732103 C T MARCO Missense_Mutation p.S192L 0.36 tolerated(0.06) benign(0.007) TCGA-D5-6532-01 2 136360216 136360216 C T R3HDM1 5'UTR 0.26 TCGA-D5-6532-01 2 141819652 141819652 T G LRP1B Missense_Mutation p.K402Q 0.25 possibly_damaging(0.728) TCGA-D5-6532-01 2 170027155 170027155 G T LRP2 Missense_Mutation p.S3762R 0.31 probably_damaging(1) TCGA-D5-6532-01 2 189963472 189963472 C T COL5A2 Missense_Mutation p.R128H 0.30 probably_damaging(0.996) TCGA-D5-6532-01 2 228881964 228881964 G A SPHKAP Silent p.I1202I 0.36 TCGA-D5-6532-01 2 230450599 230450599 G A DNER Silent p.L274L 0.34 TCGA-D5-6532-01 2 234959634 234959634 C T SPP2 Silent p.Y35Y 0.34 TCGA-D5-6532-01 2 68882177 68882177 C T PROKR1 Silent p.C217C 0.29 TCGA-D5-6532-01 2 73298902 73298902 C T SFXN5 5'UTR 0.31 TCGA-D5-6532-01 3 108140031 108140031 C T MYH15 Missense_Mutation p.E1265K 0.40 deleterious(0.04) benign(0.233) TCGA-D5-6532-01 3 135969383 135969383 G A PCCB Missense_Mutation p.D56N 0.63 deleterious_low_confidence(0.03) benign(0.008) TCGA-D5-6532-01 3 140265436 140265436 G T CLSTN2 Missense_Mutation p.M529I 0.40 tolerated(0.86) benign(0) TCGA-D5-6532-01 3 142151539 142151539 C T XRN1 Missense_Mutation p.R91Q 0.40 deleterious(0) probably_damaging(0.995) TCGA-D5-6532-01 3 154858002 154858002 G A MME Missense_Mutation p.R293Q 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-D5-6532-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.40 deleterious(0.02) probably_damaging(0.959) TCGA-D5-6532-01 3 180337737 180337737 G C CCDC39 Missense_Mutation p.L674V 0.16 deleterious(0) probably_damaging(0.971) TCGA-D5-6532-01 3 184082971 184082971 C G POLR2H Missense_Mutation p.L70V 0.32 tolerated(0.25) benign(0.001) TCGA-D5-6532-01 3 189597979 189597979 T C TP63 Intron 0.31 TCGA-D5-6532-01 3 38167755 38167755 G C ACAA1 Missense_Mutation p.P299A 0.37 deleterious(0.01) possibly_damaging(0.78) TCGA-D5-6532-01 3 40286093 40286093 C T MYRIP Missense_Mutation p.L753F 0.43 deleterious(0.01) possibly_damaging(0.815) TCGA-D5-6532-01 3 44496707 44496707 C T ZNF445 Missense_Mutation p.R112Q 0.36 deleterious(0) possibly_damaging(0.553) TCGA-D5-6532-01 3 47752267 47752268 AT - SMARCC1 Frame_Shift_Del p.I275Ffs*3 0.30 TCGA-D5-6532-01 3 62357999 62357999 G A FEZF2 Missense_Mutation p.P182L 0.34 deleterious(0.01) benign(0) TCGA-D5-6532-01 4 153802155 153802155 C T ARFIP1 Missense_Mutation p.S151L 0.34 deleterious(0) possibly_damaging(0.876) TCGA-D5-6532-01 4 55127344 55127344 C A PDGFRA Silent p.S44S 0.07 TCGA-D5-6532-01 4 5862883 5862883 G A CRMP1 Silent p.N175N 0.38 TCGA-D5-6532-01 4 68780398 68780398 C T TMPRSS11A Missense_Mutation p.D338N 0.38 tolerated(0.1) benign(0.082) TCGA-D5-6532-01 4 87028639 87028639 A C MAPK10 Intron 0.14 TCGA-D5-6532-01 4 9557926 9557926 C T MIR548I2 RNA 0.12 TCGA-D5-6532-01 5 100147520 100147520 G A ST8SIA4 3'UTR 0.39 TCGA-D5-6532-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.40 TCGA-D5-6532-01 5 112175246 112175246 C - APC Frame_Shift_Del p.P1319Lfs*2 0.26 TCGA-D5-6532-01 5 139060665 139060665 C T CXXC5 Missense_Mutation p.A186V 0.06 tolerated(0.11) benign(0.024) TCGA-D5-6532-01 5 140174842 140174842 G A PCDHA2 Missense_Mutation p.R98Q 0.32 tolerated_low_confidence(0.18) benign(0.098) TCGA-D5-6532-01 5 140201747 140201747 G A PCDHA5 Silent p.P129P 0.39 TCGA-D5-6532-01 5 140767685 140767685 C T PCDHGB4 Silent p.S78S 0.27 TCGA-D5-6532-01 5 1409160 1409160 G A SLC6A3 Silent p.I493I 0.31 TCGA-D5-6532-01 5 148627460 148627460 A T ABLIM3 Missense_Mutation p.H556L 0.28 tolerated(0.25) benign(0.101) TCGA-D5-6532-01 5 149636151 149636151 C T CAMK2A Silent p.V132V 0.48 TCGA-D5-6532-01 5 168620500 168620500 C T SLIT3 Silent p.T132T 0.29 TCGA-D5-6532-01 5 65374466 65374466 T A ERBB2IP 3'Flank 0.43 TCGA-D5-6532-01 5 79617406 79617406 C T SPZ1 3'UTR 0.38 TCGA-D5-6532-01 5 94994338 94994338 C G SPATA9 Missense_Mutation p.E252Q 0.36 tolerated_low_confidence(0.06) benign(0.017) TCGA-D5-6532-01 6 107391390 107391390 G T BEND3 Missense_Mutation p.F335L 0.40 tolerated(0.67) benign(0.137) TCGA-D5-6532-01 6 121602825 121602825 G A TBC1D32 Silent p.Y491Y 0.35 TCGA-D5-6532-01 6 130763535 130763535 A T TMEM200A 3'UTR 0.30 TCGA-D5-6532-01 6 161173943 161173943 A C PLG Silent p.G761G 0.08 TCGA-D5-6532-01 6 167585650 167585650 C T TCP10L2 Silent p.L6L 0.47 TCGA-D5-6532-01 6 27860766 27860766 C G HIST1H2AM Silent p.A54A 0.18 TCGA-D5-6532-01 6 73023356 73023356 C T RIMS1 Missense_Mutation p.R1371C 0.41 deleterious(0) possibly_damaging(0.656) TCGA-D5-6532-01 6 88125570 88125570 C T C6ORF165 Silent p.I150I 0.38 TCGA-D5-6532-01 7 129762006 129762013 AACCAAAC - KLHDC10 Frame_Shift_Del p.N250Ifs*3 0.27 TCGA-D5-6532-01 7 43484556 43484556 G A HECW1 Silent p.S595S 0.29 TCGA-D5-6532-01 7 44240712 44240712 G A YKT6 5'UTR 0.14 TCGA-D5-6532-01 7 47882604 47882604 C T PKD1L1 Missense_Mutation p.V1801I 0.33 tolerated(0.3) possibly_damaging(0.692) TCGA-D5-6532-01 7 79082403 79082403 G A MAGI2 Silent p.T78T 0.38 TCGA-D5-6532-01 7 82451845 82451845 G A PCLO Silent p.A4919A 0.41 TCGA-D5-6532-01 7 82585712 82585712 A C PCLO Missense_Mutation p.S1519R 0.40 unknown(0) TCGA-D5-6532-01 7 88964089 88964089 G A ZNF804B Missense_Mutation p.S598N 0.35 tolerated(0.4) benign(0.017) TCGA-D5-6532-01 7 90528648 90528648 C A CDK14 Missense_Mutation p.L210M 0.42 tolerated(0.23) benign(0.3) TCGA-D5-6532-01 8 52321350 52321350 G T PXDNL Missense_Mutation p.A945E 0.35 tolerated(0.65) benign(0.009) TCGA-D5-6532-01 8 7752253 7752253 C G DEFB4A Missense_Mutation p.L7V 0.20 tolerated(0.05) unknown(0) TCGA-D5-6532-01 9 118997590 118997590 T C PAPPA Silent p.F802F 0.43 TCGA-D5-6532-01 9 139744479 139744480 AA - PHPT1 Frame_Shift_Del p.K59Sfs*13 0.33 TCGA-D5-6532-01 9 5919628 5919628 T G KIAA2026 3'UTR 0.26 TCGA-D5-6532-01 9 91609659 91609659 T C C9orf47 3'UTR 0.34 TCGA-D5-6532-01 X 103216842 103216842 T A TMSB15B 5'Flank 0.90 TCGA-D5-6532-01 X 110491986 110491986 C T CAPN6 Missense_Mutation p.R432H 0.88 deleterious(0) probably_damaging(0.954) TCGA-D5-6532-01 X 112022699 112022699 C T AMOT Missense_Mutation p.A895T 0.19 unknown(0) TCGA-D5-6532-01 X 117033116 117033116 T G KLHL13 Silent p.R578R 0.06 TCGA-D5-6532-01 X 144904233 144904233 G T SLITRK2 Missense_Mutation p.G97V 0.85 tolerated(0.14) benign(0.023) TCGA-D5-6532-01 X 153459019 153459019 T A OPN1MW Missense_Mutation p.C289S 0.89 tolerated(0.08) benign(0.105) TCGA-D5-6532-01 X 18265966 18265966 C A SCML2 Missense_Mutation p.R498L 0.90 deleterious(0) probably_damaging(0.974) TCGA-D5-6532-01 X 3021840 3021840 C T ARSF Silent p.R380R 0.85 TCGA-D5-6532-01 X 79281262 79281262 G A TBX22 Missense_Mutation p.D207N 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-D5-6532-01 Y 3447303 3447303 C T TGIF2LY Silent p.D6D 0.92 TCGA-D5-6533-01 10 25701358 25701358 G A GPR158 Missense_Mutation p.D431N 0.33 tolerated(0.05) benign(0.147) TCGA-D5-6533-01 10 45602075 45602075 C T RSU1P2 RNA 0.39 TCGA-D5-6533-01 10 50959891 50959891 C T OGDHL Missense_Mutation p.R244Q 0.38 deleterious(0) possibly_damaging(0.846) TCGA-D5-6533-01 10 81706232 81706232 C T SFTPD Missense_Mutation p.E62K 0.36 deleterious(0.04) benign(0.036) TCGA-D5-6533-01 11 103040918 103040918 G T DYNC2H1 Nonsense_Mutation p.G1684* 0.17 TCGA-D5-6533-01 11 108164165 108164165 A C ATM Missense_Mutation p.Q1579H 0.23 tolerated(0.32) benign(0.009) TCGA-D5-6533-01 11 113723235 113723235 C A USP28 Nonsense_Mutation p.E86* 0.41 TCGA-D5-6533-01 11 113857248 113857248 C T HTR3A Silent p.I244I 0.43 TCGA-D5-6533-01 11 128680520 128680520 C T FLI1 Silent p.Y332Y 0.26 TCGA-D5-6533-01 11 1858690 1858690 G T SYT8 3'UTR 0.21 TCGA-D5-6533-01 11 2924775 2924775 C T SLC22A18AS 5'UTR 0.18 TCGA-D5-6533-01 11 34226169 34226169 C T ABTB2 Missense_Mutation p.D318N 0.61 tolerated(0.23) benign(0.004) TCGA-D5-6533-01 11 5536870 5536870 T A UBQLNL Missense_Mutation p.N268Y 0.21 deleterious(0) possibly_damaging(0.781) TCGA-D5-6533-01 11 62414446 62414446 C T INTS5 3'UTR 0.08 TCGA-D5-6533-01 11 6291377 6291377 G A CCKBR Missense_Mutation p.A155T 0.48 deleterious(0) probably_damaging(0.997) TCGA-D5-6533-01 11 63258488 63258488 C T HRASLS5 Missense_Mutation p.A7T 0.38 tolerated_low_confidence(0.11) possibly_damaging(0.51) TCGA-D5-6533-01 11 65547461 65547461 G A AP5B1 Missense_Mutation p.S168F 0.43 tolerated(0.2) benign(0.003) TCGA-D5-6533-01 11 67068426 67068426 C T ANKRD13D Intron 0.41 TCGA-D5-6533-01 11 67351314 67351314 C T GSTP1 Intron 0.23 TCGA-D5-6533-01 11 7960650 7960650 C T OR10A3 Missense_Mutation p.V140I 0.25 tolerated(0.12) benign(0.042) TCGA-D5-6533-01 12 112460028 112460028 C T ERP29 Missense_Mutation p.L120F 0.23 deleterious(0) possibly_damaging(0.89) TCGA-D5-6533-01 12 21926204 21926204 T A KCNJ8 Missense_Mutation p.E116V 0.29 tolerated(0.18) benign(0.001) TCGA-D5-6533-01 12 30877367 30877367 C G CAPRIN2 Missense_Mutation p.D642H 0.60 deleterious(0) probably_damaging(0.983) TCGA-D5-6533-01 12 31247721 31247721 T A DDX11 Missense_Mutation p.F483I 0.08 tolerated(0.08) probably_damaging(0.999) TCGA-D5-6533-01 12 32751467 32751467 G A FGD4 Missense_Mutation p.E213K 0.49 deleterious(0) probably_damaging(1) TCGA-D5-6533-01 12 53074048 53074048 G A KRT1 Missense_Mutation p.R29C 0.68 deleterious_low_confidence(0) unknown(0) TCGA-D5-6533-01 12 53345903 53345903 A G KRT18 Missense_Mutation p.K317E 0.11 deleterious(0.03) benign(0.25) TCGA-D5-6533-01 12 53819584 53819584 G A AMHR2 Missense_Mutation p.A245T 0.22 deleterious(0.04) possibly_damaging(0.787) TCGA-D5-6533-01 12 88547179 88547179 G A TMTC3 Missense_Mutation p.A101T 0.47 tolerated(0.32) benign(0.02) TCGA-D5-6533-01 13 23906754 23906754 T A SACS Missense_Mutation p.N3754I 0.16 probably_damaging(0.996) TCGA-D5-6533-01 13 36828207 36828207 G - CCDC169 Frame_Shift_Del p.A130Dfs*22 0.24 TCGA-D5-6533-01 13 39343930 39343930 G A FREM2 Missense_Mutation p.V1876I 0.29 tolerated(0.36) benign(0.003) TCGA-D5-6533-01 13 49050895 49050895 A G RB1 Missense_Mutation p.K860R 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6533-01 13 52951918 52951918 G T THSD1 Nonsense_Mutation p.Y729* 0.17 TCGA-D5-6533-01 13 66878738 66878738 C T PCDH9 3'UTR 0.19 TCGA-D5-6533-01 14 105169491 105169491 G A INF2 Silent p.L147L 0.65 TCGA-D5-6533-01 14 105455399 105455399 T A C14orf79 Silent p.P181P 0.70 TCGA-D5-6533-01 14 23242661 23242661 T A SLC7A7 3'UTR 0.63 TCGA-D5-6533-01 14 30100024 30100024 C T PRKD1 Nonsense_Mutation p.W532* 0.52 TCGA-D5-6533-01 14 45628421 45628421 A T FANCM Missense_Mutation p.T507S 0.66 deleterious(0.03) benign(0.179) TCGA-D5-6533-01 14 51560956 51560956 C T TRIM9 Silent p.L234L 0.64 TCGA-D5-6533-01 14 76905813 76905813 C T ESRRB Silent p.S39S 0.59 TCGA-D5-6533-01 15 52553135 52553135 T C MYO5C Missense_Mutation p.I413V 0.63 tolerated(0.08) benign(0.052) TCGA-D5-6533-01 16 2156146 2156146 C T PKD1 Missense_Mutation p.G2550D 0.44 benign(0.009) TCGA-D5-6533-01 16 28507445 28507445 G C APOBR Missense_Mutation p.E361D 0.32 tolerated(0.05) benign(0) TCGA-D5-6533-01 16 28508880 28508880 C T APOBR Missense_Mutation p.R840W 0.25 tolerated(0.22) benign(0.14) TCGA-D5-6533-01 16 3740841 3740842 TG - TRAP1 Frame_Shift_Del p.T78Rfs*11 0.34 TCGA-D5-6533-01 16 67694427 67694427 C T ACD 5'UTR 0.49 TCGA-D5-6533-01 17 30815299 30815299 G A CDK5R1 Missense_Mutation p.E221K 0.39 deleterious(0) benign(0.254) TCGA-D5-6533-01 17 3118958 3118958 T A OR1A1 Missense_Mutation p.L15Q 0.38 deleterious(0) possibly_damaging(0.646) TCGA-D5-6533-01 17 40280685 40280685 G C RAB5C Silent p.V133V 0.16 TCGA-D5-6533-01 17 57076685 57076685 C T TRIM37 3'UTR 0.41 TCGA-D5-6533-01 17 68129816 68129816 A C KCNJ16 3'UTR 0.39 TCGA-D5-6533-01 17 74868964 74868964 C T MGAT5B Missense_Mutation p.L45F 0.20 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-D5-6533-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.55 deleterious(0) probably_damaging(1) TCGA-D5-6533-01 17 80048256 80048256 G A FASN Missense_Mutation p.A622V 0.25 deleterious(0.03) probably_damaging(0.98) TCGA-D5-6533-01 17 9801325 9801325 G A RCVRN 3'UTR 0.66 TCGA-D5-6533-01 18 20606284 20606285 - T RBBP8 3'UTR 0.56 TCGA-D5-6533-01 18 21033373 21033373 G T RIOK3 5'UTR 0.64 TCGA-D5-6533-01 19 10449701 10449701 C T ICAM3 Intron 0.47 TCGA-D5-6533-01 19 12088947 12088947 A T ZNF763 Missense_Mutation p.N73Y 0.29 deleterious(0) benign(0.018) TCGA-D5-6533-01 19 12088954 12088954 A T ZNF763 Missense_Mutation p.N75I 0.29 tolerated(0.17) benign(0.064) TCGA-D5-6533-01 19 12463823 12463823 T C ZNF442 Missense_Mutation p.I62V 0.17 deleterious(0.04) probably_damaging(0.994) TCGA-D5-6533-01 19 15807861 15807861 T C CYP4F12 Missense_Mutation p.L514P 0.21 deleterious(0) probably_damaging(0.999) TCGA-D5-6533-01 19 21991397 21991397 G A ZNF43 Missense_Mutation p.P481L 0.46 deleterious(0.04) benign(0.161) TCGA-D5-6533-01 19 31770029 31770029 C T TSHZ3 Missense_Mutation p.D224N 0.44 deleterious(0) probably_damaging(0.982) TCGA-D5-6533-01 19 38976758 38976758 C T RYR1 Silent p.D1821D 0.57 TCGA-D5-6533-01 19 39663632 39663632 G A PAK4 Silent p.S93S 0.21 TCGA-D5-6533-01 19 41355864 41355864 C T CYP2A6 Missense_Mutation p.V68M 0.21 probably_damaging(0.994) TCGA-D5-6533-01 19 45202521 45202521 G A CEACAM16 5'UTR 0.22 TCGA-D5-6533-01 19 46095315 46095315 G A GPR4 5'UTR 0.26 TCGA-D5-6533-01 19 46095882 46095882 G A GPR4 5'UTR 0.32 TCGA-D5-6533-01 19 53474053 53474053 C T ZNF702P RNA 0.60 TCGA-D5-6533-01 1 152382218 152382218 G T CRNN Nonsense_Mutation p.S447* 0.37 TCGA-D5-6533-01 1 154042928 154042928 C G NUP210L Missense_Mutation p.R792T 0.39 tolerated(0.1) benign(0.001) TCGA-D5-6533-01 1 154938160 154938160 G C SHC1 Missense_Mutation p.S495R 0.33 deleterious(0) possibly_damaging(0.747) TCGA-D5-6533-01 1 157802980 157802980 A T CD5L Splice_Site p.X347_splice 0.20 TCGA-D5-6533-01 1 159409944 159409944 C G OR10J1 Missense_Mutation p.D132E 0.36 deleterious(0.01) probably_damaging(0.936) TCGA-D5-6533-01 1 161087812 161087812 G A PFDN2 Missense_Mutation p.A2V 0.11 tolerated_low_confidence(0.25) unknown(0) TCGA-D5-6533-01 1 173470160 173470160 G C SLC9C2 3'UTR 0.04 TCGA-D5-6533-01 1 175334409 175334409 C T TNR Missense_Mutation p.R775H 0.43 tolerated(0.05) probably_damaging(1) TCGA-D5-6533-01 1 182027122 182027122 G A ZNF648 Silent p.D8D 0.29 TCGA-D5-6533-01 1 20072047 20072047 C A TMCO4 Silent p.G285G 0.63 TCGA-D5-6533-01 1 201193820 201193820 C A IGFN1 Missense_Mutation p.P3435H 0.60 probably_damaging(0.999) TCGA-D5-6533-01 1 207649683 207649683 C A CR2 Missense_Mutation p.Q941K 0.43 tolerated(0.38) benign(0.205) TCGA-D5-6533-01 1 213302908 213302908 G T RPS6KC1 Missense_Mutation p.D171Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-D5-6533-01 1 228527675 228527675 C T OBSCN Missense_Mutation p.T6720M 0.38 probably_damaging(0.995) TCGA-D5-6533-01 1 237732465 237732465 C A RYR2 Silent p.G1148G 0.34 TCGA-D5-6533-01 1 240371111 240371111 C T FMN2 Missense_Mutation p.P1000L 0.29 unknown(0) TCGA-D5-6533-01 1 248308456 248308456 T A OR2M5 Missense_Mutation p.W3R 0.33 tolerated(0.07) benign(0.003) TCGA-D5-6533-01 1 33549627 33549627 C T ADC Silent p.L60L 0.64 TCGA-D5-6533-01 1 44386459 44386459 C T ST3GAL3 Silent p.I368I 0.70 TCGA-D5-6533-01 1 90180664 90180664 G A LRRC8C 3'UTR 0.41 TCGA-D5-6533-01 1 90401459 90401459 G T LRRC8D 3'UTR 0.60 TCGA-D5-6533-01 20 44856238 44856238 C T CDH22 Silent p.S193S 0.48 TCGA-D5-6533-01 20 4764859 4764859 C T RASSF2 3'UTR 0.44 TCGA-D5-6533-01 20 49211142 49211142 C G FAM65C Missense_Mutation p.K716N 0.38 deleterious(0) probably_damaging(0.997) TCGA-D5-6533-01 20 55027725 55027725 G A CASS4 Missense_Mutation p.R498Q 0.51 tolerated(1) benign(0.01) TCGA-D5-6533-01 21 38997684 38997684 T C KCNJ6 Missense_Mutation p.D350G 0.13 deleterious(0) probably_damaging(0.986) TCGA-D5-6533-01 21 47361750 47361750 G C PCBP3 3'UTR 0.42 TCGA-D5-6533-01 22 45931121 45931121 G A FBLN1 Missense_Mutation p.D276N 0.31 tolerated(0.4) probably_damaging(0.948) TCGA-D5-6533-01 2 108614347 108614347 T C SLC5A7 Missense_Mutation p.S168P 0.32 deleterious(0) probably_damaging(0.999) TCGA-D5-6533-01 2 168067325 168067325 G A XIRP2 Missense_Mutation p.E215K 0.11 probably_damaging(0.932) TCGA-D5-6533-01 2 179569479 179569479 T A TTN Missense_Mutation p.E9907V 0.32 TCGA-D5-6533-01 2 179640849 179640849 C T TTN Silent p.A1914A 0.31 TCGA-D5-6533-01 2 196771668 196771668 G T DNAH7 Silent p.L1390L 0.18 TCGA-D5-6533-01 2 201399776 201399776 C T SGOL2 Missense_Mutation p.A64V 0.04 deleterious(0) probably_damaging(1) TCGA-D5-6533-01 2 210846901 210846901 A T UNC80 Splice_Site p.X2974_splice 0.39 TCGA-D5-6533-01 2 228120786 228120786 G C COL4A3 Missense_Mutation p.E311D 0.26 probably_damaging(0.928) TCGA-D5-6533-01 2 26467425 26467425 A T HADHA Missense_Mutation p.S14T 0.16 tolerated(0.41) benign(0.001) TCGA-D5-6533-01 2 26467426 26467426 A T HADHA Missense_Mutation p.F13L 0.16 tolerated(0.63) benign(0.001) TCGA-D5-6533-01 2 26467427 26467427 A T HADHA Missense_Mutation p.F13Y 0.16 tolerated(0.54) benign(0.003) TCGA-D5-6533-01 2 54895833 54895833 A C SPTBN1 3'UTR 0.22 TCGA-D5-6533-01 2 65593766 65593766 G A SPRED2 Intron 0.21 TCGA-D5-6533-01 2 73762035 73762035 C T ALMS1 Missense_Mutation p.P3288L 0.19 benign(0.004) TCGA-D5-6533-01 2 89111121 89111121 T G MIR4436A 5'Flank 0.57 TCGA-D5-6533-01 2 97034707 97034707 T C NCAPH Intron 0.40 TCGA-D5-6533-01 3 128618139 128618139 A C ACAD9 Missense_Mutation p.T215P 0.48 deleterious(0.02) probably_damaging(0.949) TCGA-D5-6533-01 3 130113899 130113899 C T COL6A5 Silent p.Y1053Y 0.42 TCGA-D5-6533-01 3 146307531 146307531 A G PLSCR5 Missense_Mutation p.V229A 0.46 tolerated(1) probably_damaging(0.958) TCGA-D5-6533-01 3 156983424 156983424 A G VEPH1 Missense_Mutation p.I719T 0.48 deleterious(0) possibly_damaging(0.845) TCGA-D5-6533-01 3 165548082 165548082 C G BCHE Missense_Mutation p.R247T 0.28 deleterious(0) probably_damaging(0.999) TCGA-D5-6533-01 3 195479923 195479923 T A MUC4 Silent p.L5169L 0.19 TCGA-D5-6533-01 3 30891560 30891560 G T GADL1 Nonsense_Mutation p.Y193* 0.22 TCGA-D5-6533-01 3 30891561 30891561 T C GADL1 Missense_Mutation p.Y193C 0.21 deleterious(0) probably_damaging(0.997) TCGA-D5-6533-01 3 49348097 49348097 G A USP4 Missense_Mutation p.L304F 0.49 deleterious(0) probably_damaging(1) TCGA-D5-6533-01 3 49843393 49843393 C T UBA7 Missense_Mutation p.G949D 0.29 tolerated(0.09) benign(0.107) TCGA-D5-6533-01 3 52643390 52643390 G A PBRM1 Missense_Mutation p.R836W 0.25 deleterious(0) possibly_damaging(0.87) TCGA-D5-6533-01 3 53857751 53857751 C A CHDH Silent p.V95V 0.56 TCGA-D5-6533-01 3 73113295 73113295 C A PPP4R2 Missense_Mutation p.H212Q 0.22 tolerated(0.22) benign(0.053) TCGA-D5-6533-01 4 108866215 108866215 A C CYP2U1 Missense_Mutation p.S194R 0.28 deleterious(0) probably_damaging(0.998) TCGA-D5-6533-01 4 122682702 122682702 A G TMEM155 Missense_Mutation p.L68P 0.07 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-D5-6533-01 4 122854015 122854015 T G TRPC3 Missense_Mutation p.E133A 0.24 deleterious(0.05) benign(0.052) TCGA-D5-6533-01 4 126238562 126238562 C T FAT4 Silent p.S332S 0.57 TCGA-D5-6533-01 4 126370159 126370159 A G FAT4 Missense_Mutation p.N2663S 0.24 probably_damaging(0.995) TCGA-D5-6533-01 4 13584322 13584322 G A BOD1L1 Silent p.T2824T 0.16 TCGA-D5-6533-01 4 20255583 20255583 G A SLIT2 Missense_Mutation p.V49M 0.38 deleterious(0.03) possibly_damaging(0.76) TCGA-D5-6533-01 4 21305435 21305435 A G KCNIP4 Intron 0.34 TCGA-D5-6533-01 4 36179561 36179561 G C ARAP2 Missense_Mutation p.S582C 0.16 deleterious(0.04) benign(0.223) TCGA-D5-6533-01 5 112174043 112174043 G T APC Nonsense_Mutation p.E918* 0.40 TCGA-D5-6533-01 5 112175755 112175771 ATTACATTTTGCCACGG - APC Frame_Shift_Del p.L1489Kfs*19 0.37 TCGA-D5-6533-01 5 1219196 1219196 C T SLC6A19 Missense_Mutation p.P451L 0.37 deleterious(0.02) benign(0.108) TCGA-D5-6533-01 5 124080454 124080454 C T ZNF608 Missense_Mutation p.A77T 0.41 deleterious(0.04) benign(0.002) TCGA-D5-6533-01 5 13850870 13850870 C T DNAH5 Missense_Mutation p.A1669T 0.17 possibly_damaging(0.787) TCGA-D5-6533-01 5 140183202 140183202 C A PCDHA3 Intron 0.17 TCGA-D5-6533-01 5 140236425 140236425 C T PCDHA10 Silent p.N264N 0.36 TCGA-D5-6533-01 5 140559225 140559225 G A PCDHB8 Missense_Mutation p.R537H 0.14 deleterious_low_confidence(0.05) benign(0.041) TCGA-D5-6533-01 5 140746025 140746025 G A PCDHGA5 Missense_Mutation p.V710M 0.32 tolerated_low_confidence(0.09) benign(0.298) TCGA-D5-6533-01 5 16701724 16701724 A T MYO10 Missense_Mutation p.L927H 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D5-6533-01 5 175955918 175955918 G A RNF44 3'UTR 0.14 TCGA-D5-6533-01 5 176884475 176884475 G C DBN1 Missense_Mutation p.P639A 0.34 deleterious(0) probably_damaging(0.999) TCGA-D5-6533-01 5 180048632 180048632 C T FLT4 Missense_Mutation p.A644T 0.43 tolerated(0.15) benign(0.036) TCGA-D5-6533-01 5 32364129 32364129 A G ZFR Silent p.P990P 0.39 TCGA-D5-6533-01 5 33630924 33630924 G A ADAMTS12 Silent p.G661G 0.39 TCGA-D5-6533-01 5 40681496 40681496 G A PTGER4 Missense_Mutation p.R134Q 0.16 tolerated(0.06) benign(0.327) TCGA-D5-6533-01 5 65466527 65466527 T C SREK1 Silent p.G412G 0.40 TCGA-D5-6533-01 5 65466741 65466742 - A SREK1 Nonsense_Mutation p.Y484* 0.30 TCGA-D5-6533-01 6 152763330 152763330 G T SYNE1 Silent p.I1296I 0.41 TCGA-D5-6533-01 6 18134095 18134095 G A TPMT Silent p.L174L 0.22 TCGA-D5-6533-01 6 28227361 28227361 C T NKAPL Missense_Mutation p.S71L 0.37 deleterious(0.03) unknown(0) TCGA-D5-6533-01 6 28297255 28297255 C A ZSCAN31 Missense_Mutation p.R69M 0.25 tolerated(0.24) probably_damaging(0.996) TCGA-D5-6533-01 6 29275324 29275324 C A OR14J1 Silent p.V286V 0.40 TCGA-D5-6533-01 6 32047084 32047084 C T RNA5SP206 5'Flank 0.38 TCGA-D5-6533-01 6 49582479 49582479 G A RHAG Missense_Mutation p.T243M 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6533-01 6 55638913 55638913 G A BMP5 Nonsense_Mutation p.R321* 0.39 TCGA-D5-6533-01 6 57512694 57512694 G T PRIM2 3'UTR 0.16 TCGA-D5-6533-01 6 64488017 64488017 C A EYS Nonsense_Mutation p.G2594* 0.36 TCGA-D5-6533-01 6 87726252 87726252 G A HTR1E 3'UTR 0.16 TCGA-D5-6533-01 6 88854904 88854904 G A CNR1 Silent p.Y30Y 0.36 TCGA-D5-6533-01 7 100244641 100244641 C T ACTL6B Missense_Mutation p.E297K 0.28 deleterious(0.02) possibly_damaging(0.779) TCGA-D5-6533-01 7 106545831 106545831 A C PIK3CG Nonstop_Mutation p.*1103Sext*10 0.14 TCGA-D5-6533-01 7 131883253 131883253 G T PLXNA4 Missense_Mutation p.P910H 0.19 tolerated(0.08) probably_damaging(0.968) TCGA-D5-6533-01 7 150217708 150217708 C A GIMAP7 Silent p.R216R 0.17 TCGA-D5-6533-01 7 154645531 154645535 AAGAA - DPP6 Frame_Shift_Del 0.33 TCGA-D5-6533-01 7 2638141 2638141 G A IQCE Missense_Mutation p.E495K 0.50 tolerated(0.39) benign(0.006) TCGA-D5-6533-01 7 29160540 29160540 G C CPVL Silent p.T46T 0.28 TCGA-D5-6533-01 7 31378427 31378427 G A NEUROD6 Silent p.I152I 0.28 TCGA-D5-6533-01 7 34917879 34917879 C G NPSR1 3'UTR 0.30 TCGA-D5-6533-01 7 43484520 43484520 C T HECW1 Silent p.D583D 0.18 TCGA-D5-6533-01 7 47968963 47968963 C T PKD1L1 Missense_Mutation p.V300M 0.50 tolerated(0.19) benign(0.001) TCGA-D5-6533-01 7 48313782 48313782 T G ABCA13 Missense_Mutation p.L1507V 0.21 benign(0.181) TCGA-D5-6533-01 7 50136003 50136003 T C C7orf72 Missense_Mutation p.S108P 0.47 deleterious(0) probably_damaging(0.994) TCGA-D5-6533-01 7 63529320 63529320 G T ZNF727 Nonsense_Mutation p.E19* 0.32 TCGA-D5-6533-01 7 6487435 6487435 G A DAGLB Silent p.I13I 0.18 TCGA-D5-6533-01 7 70597888 70597888 C T WBSCR17 Missense_Mutation p.R34C 0.18 deleterious_low_confidence(0) benign(0.18) TCGA-D5-6533-01 7 72849727 72849727 G A FZD9 Missense_Mutation p.V464I 0.26 tolerated(0.08) benign(0.043) TCGA-D5-6533-01 7 88424233 88424233 C G C7orf62 Missense_Mutation p.Q8H 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.465) TCGA-D5-6533-01 7 98992139 98992139 C G ARPC1B 3'UTR 0.17 TCGA-D5-6533-01 7 99725547 99725549 GTG - MBLAC1 In_Frame_Del p.V179del 0.15 TCGA-D5-6533-01 8 104954999 104954999 A G RIMS2 Splice_Site p.X850_splice 0.16 TCGA-D5-6533-01 8 11058254 11058254 G T XKR6 Missense_Mutation p.L199I 0.50 tolerated(0.41) probably_damaging(0.949) TCGA-D5-6533-01 8 143928031 143928031 A C GML Missense_Mutation p.E134D 0.39 tolerated(0.22) benign(0.034) TCGA-D5-6533-01 8 3165239 3165239 C A CSMD1 Missense_Mutation p.A1310S 0.56 benign(0.121) TCGA-D5-6533-01 8 80677972 80677972 A T HEY1 Nonsense_Mutation p.Y126* 0.35 TCGA-D5-6533-01 8 95677267 95677267 A T ESRP1 Missense_Mutation p.M290L 0.41 tolerated(0.1) benign(0.405) TCGA-D5-6533-01 9 106864383 106864383 T A SMC2 Missense_Mutation p.V260D 0.45 deleterious(0) benign(0.192) TCGA-D5-6533-01 9 124622635 124622635 G A TTLL11 Silent p.T697T 0.28 TCGA-D5-6533-01 9 13222420 13222420 G C MPDZ Missense_Mutation p.Q187E 0.44 tolerated(0.07) probably_damaging(0.999) TCGA-D5-6533-01 9 137779263 137779263 C T FCN2 3'UTR 0.31 TCGA-D5-6533-01 9 21305236 21305236 A G IFNA5 Missense_Mutation p.L7S 0.29 tolerated(0.1) benign(0.033) TCGA-D5-6533-01 9 35715083 35715083 G A TLN1 Silent p.I909I 0.12 TCGA-D5-6533-01 9 4118148 4118148 G A GLIS3 Missense_Mutation p.P444S 0.40 tolerated(0.19) benign(0.254) TCGA-D5-6533-01 9 88880710 88880712 TTT ATAA ISCA1 3'UTR 0.20 TCGA-D5-6533-01 9 91619001 91619001 G A S1PR3 3'UTR 0.21 TCGA-D5-6533-01 9 91657077 91657077 C T SHC3 Silent p.T408T 0.41 TCGA-D5-6533-01 X 10491220 10491220 A G MID1 Missense_Mutation p.L223S 0.11 deleterious(0) probably_damaging(0.994) TCGA-D5-6533-01 X 109931862 109931862 G A CHRDL1 Silent p.D316D 0.27 TCGA-D5-6533-01 X 110385412 110385412 C T PAK3 Silent p.T88T 0.29 TCGA-D5-6533-01 X 110492221 110492221 C A CAPN6 Missense_Mutation p.R408L 0.29 deleterious(0) probably_damaging(0.913) TCGA-D5-6533-01 X 114251824 114251824 G A IL13RA2 Silent p.F3F 0.16 TCGA-D5-6533-01 X 115305116 115305116 T G AGTR2 3'UTR 0.12 TCGA-D5-6533-01 X 123519762 123519762 C T TENM1 Silent p.P1947P 0.24 TCGA-D5-6533-01 X 129149355 129149355 T C BCORL1 Silent p.F869F 0.13 TCGA-D5-6533-01 X 130222716 130222716 G A ARHGAP36 Missense_Mutation p.R534Q 0.29 tolerated_low_confidence(0.51) benign(0.004) TCGA-D5-6533-01 X 134494203 134494203 G A ZNF449 Silent p.E253E 0.24 TCGA-D5-6533-01 X 149818311 149818311 T C MTM1 Silent p.P330P 0.12 TCGA-D5-6533-01 X 152959811 152959811 G A SLC6A8 Missense_Mutation p.V469I 0.25 tolerated(0.29) benign(0.151) TCGA-D5-6533-01 X 153049766 153049766 A T SRPK3 Missense_Mutation p.N389Y 0.28 deleterious(0.01) benign(0.066) TCGA-D5-6533-01 X 153247322 153247322 C T TMEM187 5'UTR 0.20 TCGA-D5-6533-01 X 1585140 1585140 G A P2RY8 Silent p.Y104Y 0.24 TCGA-D5-6533-01 X 16635270 16635270 T C CTPS2 Intron 0.27 TCGA-D5-6533-01 X 21675338 21675338 C T KLHL34 Missense_Mutation p.R190Q 0.24 tolerated(0.37) benign(0.016) TCGA-D5-6533-01 X 24483566 24483566 G T PDK3 5'Flank 0.30 TCGA-D5-6533-01 X 2700142 2700142 C T XG Nonsense_Mutation p.Q55* 0.28 TCGA-D5-6533-01 X 29301234 29301234 C A IL1RAPL1 Missense_Mutation p.P88T 0.25 deleterious(0) probably_damaging(0.996) TCGA-D5-6533-01 X 29973423 29973423 C G IL1RAPL1 Missense_Mutation p.A526G 0.13 tolerated(0.09) benign(0.142) TCGA-D5-6533-01 X 30326828 30326828 G A NR0B1 Missense_Mutation p.T218M 0.27 tolerated(0.11) benign(0.092) TCGA-D5-6533-01 X 3242677 3242677 G A MXRA5 Missense_Mutation p.T350M 0.27 deleterious(0.01) probably_damaging(0.948) TCGA-D5-6533-01 X 47487628 47487628 C T CFP Silent p.T92T 0.09 TCGA-D5-6533-01 X 48826586 48826586 C G KCND1 Silent p.P31P 0.29 TCGA-D5-6533-01 X 48849955 48849955 G C GRIPAP1 Missense_Mutation p.N114K 0.12 probably_damaging(0.925) TCGA-D5-6533-01 X 66764833 66764833 G A AR 5'UTR 0.24 TCGA-D5-6533-01 X 71425693 71425693 A C ERCC6L Missense_Mutation p.V975G 0.30 tolerated(0.37) benign(0.003) TCGA-D5-6533-01 X 77386984 77386984 G A TAF9B 3'UTR 0.26 TCGA-D5-6533-01 X 86880788 86880788 C A KLHL4 Missense_Mutation p.A439D 0.06 deleterious(0.04) possibly_damaging(0.462) TCGA-D5-6534-01 10 101966986 101966986 C A CHUK Splice_Site p.X411_splice 0.19 TCGA-D5-6534-01 10 112581616 112581616 G A RBM20 Missense_Mutation p.S1080N 0.24 tolerated(0.14) benign(0.411) TCGA-D5-6534-01 10 13375827 13375827 C T SEPHS1 Missense_Mutation p.E184K 0.19 deleterious(0.01) possibly_damaging(0.55) TCGA-D5-6534-01 10 20453402 20453402 T A PLXDC2 Silent p.P263P 0.15 TCGA-D5-6534-01 10 32344906 32344906 C G KIF5B 5'UTR 0.23 TCGA-D5-6534-01 10 5789244 5789244 C A FAM208B Missense_Mutation p.T1287K 0.16 deleterious(0) possibly_damaging(0.835) TCGA-D5-6534-01 10 73579313 73579313 T A PSAP Missense_Mutation p.D420V 0.18 deleterious(0) probably_damaging(0.968) TCGA-D5-6534-01 10 73579314 73579314 C A PSAP Missense_Mutation p.D420Y 0.18 deleterious(0) probably_damaging(0.991) TCGA-D5-6534-01 10 91066977 91066977 C T IFIT2 Nonsense_Mutation p.R422* 0.22 TCGA-D5-6534-01 10 93390208 93390208 C T PPP1R3C Missense_Mutation p.D144N 0.26 tolerated(0.05) possibly_damaging(0.733) TCGA-D5-6534-01 11 118938643 118938643 T C VPS11 Missense_Mutation p.S37P 0.24 tolerated(0.27) benign(0) TCGA-D5-6534-01 11 124440222 124440222 G T OR8A1 Missense_Mutation p.M86I 0.27 tolerated(1) benign(0) TCGA-D5-6534-01 11 124745134 124745134 T A ROBO3 Missense_Mutation p.L734H 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6534-01 11 33763344 33763344 T C FBXO3 3'UTR 0.23 TCGA-D5-6534-01 11 35489560 35489560 C T PAMR1 Missense_Mutation p.R270H 0.17 tolerated(0.58) benign(0.001) TCGA-D5-6534-01 11 56468388 56468388 C A OR9G1 Missense_Mutation p.D175E 0.07 deleterious(0.01) possibly_damaging(0.889) TCGA-D5-6534-01 11 62886277 62886277 G A SLC22A24 Intron 0.31 TCGA-D5-6534-01 12 109182824 109182824 C G SSH1 Missense_Mutation p.R697T 0.11 deleterious_low_confidence(0.02) benign(0.05) TCGA-D5-6534-01 12 113348909 113348909 G A OAS1 Missense_Mutation p.E175K 0.12 tolerated(0.36) benign(0.003) TCGA-D5-6534-01 12 115114276 115114276 C A TBX3 Splice_Site p.X314_splice 0.13 TCGA-D5-6534-01 12 122399889 122399889 G A WDR66 Silent p.E771E 0.11 TCGA-D5-6534-01 12 123265710 123265710 G C CCDC62 Splice_Site p.X77_splice 0.17 TCGA-D5-6534-01 12 130934808 130934808 C T RIMBP2 Missense_Mutation p.R156Q 0.17 tolerated(0.63) benign(0.004) TCGA-D5-6534-01 12 2058462 2058462 C T DCP1B Silent p.P521P 0.10 TCGA-D5-6534-01 12 42706924 42706924 C T ZCRB1 Missense_Mutation p.R200H 0.09 deleterious(0.03) possibly_damaging(0.73) TCGA-D5-6534-01 12 4919742 4919742 G A KCNA6 Missense_Mutation p.V179I 0.17 tolerated(0.3) probably_damaging(0.987) TCGA-D5-6534-01 12 49218951 49218951 A G CACNB3 Silent p.E166E 0.08 TCGA-D5-6534-01 12 54893225 54893225 C G NCKAP1L Silent p.P63P 0.16 TCGA-D5-6534-01 12 54960870 54960870 C T PDE1B Missense_Mutation p.R76W 0.32 deleterious(0) probably_damaging(0.996) TCGA-D5-6534-01 12 55026136 55026136 C T LACRT Missense_Mutation p.A48T 0.28 tolerated_low_confidence(0.1) possibly_damaging(0.682) TCGA-D5-6534-01 12 56096942 56096942 T A ITGA7 Missense_Mutation p.Q76L 0.19 deleterious(0.04) benign(0.335) TCGA-D5-6534-01 12 56489541 56489541 G A ERBB3 Missense_Mutation p.R669H 0.14 tolerated(0.1) possibly_damaging(0.648) TCGA-D5-6534-01 12 6125355 6125355 C T VWF Missense_Mutation p.M1785I 0.14 tolerated(0.45) benign(0) TCGA-D5-6534-01 12 70072568 70072568 C T BEST3 Missense_Mutation p.R196Q 0.14 deleterious(0.03) possibly_damaging(0.832) TCGA-D5-6534-01 13 100982823 100982823 C T PCCA Missense_Mutation p.H480Y 0.50 deleterious(0) probably_damaging(0.992) TCGA-D5-6534-01 13 103703737 103703737 C T SLC10A2 Missense_Mutation p.V211I 0.08 tolerated(0.49) benign(0.006) TCGA-D5-6534-01 13 109613890 109613890 G A MYO16 Missense_Mutation p.V659M 0.06 deleterious(0.02) probably_damaging(0.995) TCGA-D5-6534-01 13 19753703 19753703 G A TUBA3C Missense_Mutation p.R2C 0.08 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D5-6534-01 13 20717031 20717031 G A GJA3 Missense_Mutation p.R133W 0.16 deleterious(0) benign(0.093) TCGA-D5-6534-01 13 23912678 23912678 C T SACS Silent p.S1779S 0.05 TCGA-D5-6534-01 13 47012015 47012015 C G PPP1R2P4 RNA 0.59 TCGA-D5-6534-01 13 47266748 47266748 C A LRCH1 Missense_Mutation p.D364E 0.13 tolerated(0.1) possibly_damaging(0.779) TCGA-D5-6534-01 13 84454549 84454549 C T SLITRK1 Missense_Mutation p.S365N 0.54 tolerated(0.06) benign(0.007) TCGA-D5-6534-01 13 93879789 93879789 C T GPC6 Missense_Mutation p.A27V 0.20 tolerated(0.05) possibly_damaging(0.507) TCGA-D5-6534-01 14 30047521 30047521 C T PRKD1 Missense_Mutation p.R827H 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6534-01 14 75508329 75508329 G A MLH3 Missense_Mutation p.R1152C 0.14 deleterious(0.04) benign(0.194) TCGA-D5-6534-01 14 77951091 77951091 A C ISM2 Missense_Mutation p.L105V 0.19 tolerated_low_confidence(0.09) possibly_damaging(0.899) TCGA-D5-6534-01 14 77951092 77951092 C T ISM2 Silent p.P104P 0.19 TCGA-D5-6534-01 14 93483100 93483100 A G ITPK1 Missense_Mutation p.I56T 0.08 deleterious(0) probably_damaging(1) TCGA-D5-6534-01 15 24924546 24924546 C A NPAP1 3'UTR 0.16 TCGA-D5-6534-01 15 34130540 34130540 C T RYR3 Missense_Mutation p.S4120F 0.18 benign(0.001) TCGA-D5-6534-01 15 40303495 40303495 C T EIF2AK4 Missense_Mutation p.T1236M 0.18 deleterious(0) probably_damaging(0.982) TCGA-D5-6534-01 15 41476733 41476733 C A EXD1 Missense_Mutation p.R314L 0.18 deleterious(0) probably_damaging(1) TCGA-D5-6534-01 15 65491140 65491140 C T CILP Missense_Mutation p.R495H 0.17 deleterious(0.04) benign(0.009) TCGA-D5-6534-01 15 74429084 74429084 C T ISLR2 3'UTR 0.18 TCGA-D5-6534-01 15 74559107 74559107 C G CCDC33 Silent p.P136P 0.19 TCGA-D5-6534-01 15 79282540 79282540 G A RASGRF1 Silent p.H1085H 0.15 TCGA-D5-6534-01 15 89398344 89398344 C A ACAN Missense_Mutation p.T843K 0.13 tolerated(0.08) possibly_damaging(0.788) TCGA-D5-6534-01 15 91312667 91312667 G A BLM Splice_Site p.X803_splice 0.21 TCGA-D5-6534-01 16 1271915 1271915 G A TPSG1 Missense_Mutation p.P280L 0.27 tolerated(0.09) probably_damaging(0.958) TCGA-D5-6534-01 17 1370580 1370580 A G MYO1C Missense_Mutation p.S1041P 0.09 tolerated(0.52) probably_damaging(0.979) TCGA-D5-6534-01 17 27493834 27493834 C T MYO18A Missense_Mutation p.R42Q 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D5-6534-01 17 39633824 39633824 C T KRT35 Missense_Mutation p.R389Q 0.13 tolerated(0.06) probably_damaging(0.951) TCGA-D5-6534-01 17 66887649 66887649 C A ABCA8 Missense_Mutation p.S1002I 0.24 deleterious(0.02) possibly_damaging(0.878) TCGA-D5-6534-01 17 7578240 7578241 CA - TP53 Frame_Shift_Del p.V203Gfs*5 0.17 TCGA-D5-6534-01 18 24496190 24496190 A C CHST9 3'UTR 0.16 TCGA-D5-6534-01 18 55398964 55398964 C A ATP8B1 Missense_Mutation p.D26Y 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D5-6534-01 18 56586867 56586867 A G ZNF532 Missense_Mutation p.T450A 0.09 tolerated(0.28) probably_damaging(0.997) TCGA-D5-6534-01 18 61306945 61306945 C T SERPINB4 Missense_Mutation p.A179T 0.13 tolerated(0.21) probably_damaging(0.942) TCGA-D5-6534-01 18 65180048 65180048 C T DSEL Missense_Mutation p.A610T 0.14 tolerated(0.08) probably_damaging(0.999) TCGA-D5-6534-01 19 11145689 11145689 G A SMARCA4 Missense_Mutation p.D1351N 0.16 probably_damaging(0.932) TCGA-D5-6534-01 19 11942240 11942240 T G ZNF440 Silent p.T83T 0.19 TCGA-D5-6534-01 19 12864087 12864087 G A BEST2 Missense_Mutation p.E56K 0.17 tolerated(0.08) benign(0.311) TCGA-D5-6534-01 19 15590158 15590158 G T PGLYRP2 Missense_Mutation p.L9I 0.17 deleterious(0.02) benign(0.368) TCGA-D5-6534-01 19 21606675 21606675 A C ZNF493 Missense_Mutation p.H405P 0.19 deleterious(0) possibly_damaging(0.731) TCGA-D5-6534-01 19 21606676 21606676 C A ZNF493 Missense_Mutation p.H405Q 0.19 deleterious(0) possibly_damaging(0.527) TCGA-D5-6534-01 19 3179338 3179338 G T S1PR4 Missense_Mutation p.G183V 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6534-01 19 5041262 5041262 C T KDM4B Silent p.D144D 0.11 TCGA-D5-6534-01 19 54666446 54666446 T G TMC4 Missense_Mutation p.T494P 0.22 deleterious(0.01) possibly_damaging(0.844) TCGA-D5-6534-01 19 56466743 56466743 A C NLRP8 Missense_Mutation p.E440A 0.21 tolerated(0.43) benign(0.041) TCGA-D5-6534-01 19 58549469 58549469 G A ZSCAN1 Missense_Mutation p.A89T 0.19 deleterious(0.02) benign(0.22) TCGA-D5-6534-01 19 9581174 9581174 A C ZNF560 Missense_Mutation p.S114R 0.15 deleterious(0) probably_damaging(0.928) TCGA-D5-6534-01 1 109365733 109365733 A G AKNAD1 Intron 0.18 TCGA-D5-6534-01 1 148756618 148756619 - T NBPF16 Frame_Shift_Ins p.T652Yfs*25 0.08 TCGA-D5-6534-01 1 150525982 150525982 G A ADAMTSL4 Missense_Mutation p.R172H 0.19 deleterious(0.01) possibly_damaging(0.694) TCGA-D5-6534-01 1 152080948 152080948 C T TCHH Missense_Mutation p.R1582H 0.13 unknown(0) TCGA-D5-6534-01 1 156347929 156347929 G T RHBG Missense_Mutation p.G175W 0.12 deleterious(0.04) probably_damaging(0.959) TCGA-D5-6534-01 1 160340477 160340477 G T NHLH1 5'UTR 0.24 TCGA-D5-6534-01 1 161018460 161018460 T G ARHGAP30 Missense_Mutation p.E784A 0.13 deleterious_low_confidence(0.02) benign(0.26) TCGA-D5-6534-01 1 184787836 184787836 T A FAM129A Missense_Mutation p.E370V 0.16 deleterious(0) probably_damaging(0.994) TCGA-D5-6534-01 1 185125706 185125706 G C TRMT1L Missense_Mutation p.P47A 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.539) TCGA-D5-6534-01 1 186022152 186022152 C A HMCN1 Missense_Mutation p.L2216M 0.14 probably_damaging(0.998) TCGA-D5-6534-01 1 201009174 201009174 C A CACNA1S Missense_Mutation p.D1803Y 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D5-6534-01 1 225548515 225548515 A T DNAH14 Missense_Mutation p.K3877I 0.17 benign(0.325) TCGA-D5-6534-01 1 237947310 237947310 G A RYR2 Missense_Mutation p.V4100I 0.16 probably_damaging(0.995) TCGA-D5-6534-01 1 241823909 241823909 C T WDR64 Missense_Mutation p.R75C 0.18 tolerated(0.67) benign(0) TCGA-D5-6534-01 1 248756599 248756599 G T OR2T10 Missense_Mutation p.F157L 0.17 tolerated(0.5) benign(0.009) TCGA-D5-6534-01 1 248845321 248845321 A C OR14I1 Missense_Mutation p.C95W 0.13 deleterious(0) probably_damaging(1) TCGA-D5-6534-01 1 33235331 33235331 G C KIAA1522 Missense_Mutation p.R215P 0.20 deleterious(0) unknown(0) TCGA-D5-6534-01 1 40209538 40209538 C T PPIE Missense_Mutation p.T109M 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D5-6534-01 1 57425783 57425783 C T C8B Missense_Mutation p.M53I 0.07 tolerated(0.1) benign(0) TCGA-D5-6534-01 1 62740088 62740088 C A KANK4 Nonsense_Mutation p.E230* 0.13 TCGA-D5-6534-01 1 86340334 86340334 G A COL24A1 Missense_Mutation p.R1046W 0.12 deleterious(0) probably_damaging(0.977) TCGA-D5-6534-01 1 86590591 86590591 C G COL24A1 Missense_Mutation p.E476D 0.12 tolerated(0.15) benign(0.055) TCGA-D5-6534-01 1 94514425 94514425 G A ABCA4 Silent p.H914H 0.15 TCGA-D5-6534-01 20 16731815 16731815 A T OTOR 3'UTR 0.29 TCGA-D5-6534-01 20 2377211 2377211 G A TGM6 Missense_Mutation p.G162S 0.22 deleterious(0.03) probably_damaging(0.927) TCGA-D5-6534-01 20 33567227 33567227 C T MYH7B Silent p.D84D 0.14 TCGA-D5-6534-01 20 33962032 33962032 A G UQCC1 Missense_Mutation p.Y121H 0.29 deleterious(0) probably_damaging(0.997) TCGA-D5-6534-01 20 34022454 34022454 C T GDF5 Silent p.A253A 0.53 TCGA-D5-6534-01 20 34292392 34292393 TA - RBM39 3'UTR 0.19 TCGA-D5-6534-01 20 44657972 44657972 C T SLC12A5 Intron 0.32 TCGA-D5-6534-01 20 58486891 58486891 G T SYCP2 Missense_Mutation p.P296T 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6534-01 21 31538770 31538770 G A CLDN17 Nonsense_Mutation p.R56* 0.23 TCGA-D5-6534-01 21 31852601 31852601 G T KRTAP19-1 Silent p.G12G 0.15 TCGA-D5-6534-01 21 42064795 42064795 G T DSCAM Nonsense_Mutation p.S150* 0.13 TCGA-D5-6534-01 21 44479382 44479382 G T CBS Missense_Mutation p.Q393K 0.18 tolerated(0.72) benign(0) TCGA-D5-6534-01 22 32625276 32625276 G A SLC5A4 Silent p.T395T 0.19 TCGA-D5-6534-01 22 38690236 38690236 G A CSNK1E Missense_Mutation p.A366V 0.14 tolerated_low_confidence(0.15) benign(0.252) TCGA-D5-6534-01 22 45608132 45608132 C A KIAA0930 Intron 0.31 TCGA-D5-6534-01 2 100171158 100171158 C T AFF3 Missense_Mutation p.G1133R 0.10 deleterious(0.04) benign(0.08) TCGA-D5-6534-01 2 1457577 1457577 C T TPO Silent p.N198N 0.26 TCGA-D5-6534-01 2 152528931 152528931 G A NEB Silent p.D1417D 0.09 TCGA-D5-6534-01 2 163099882 163099882 G A FAP 5'UTR 0.19 TCGA-D5-6534-01 2 187697951 187697951 G T ZSWIM2 Missense_Mutation p.N279K 0.16 deleterious(0.02) benign(0.097) TCGA-D5-6534-01 2 206921483 206921483 C T INO80D Missense_Mutation p.G135R 0.13 tolerated_low_confidence(0.19) probably_damaging(0.916) TCGA-D5-6534-01 2 215854087 215854087 G T ABCA12 Missense_Mutation p.F1265L 0.08 deleterious(0.05) benign(0.116) TCGA-D5-6534-01 2 230312076 230312076 G A DNER Missense_Mutation p.T481M 0.15 tolerated(0.1) benign(0.104) TCGA-D5-6534-01 2 233244628 233244628 C G ALPP Missense_Mutation p.I213M 0.16 tolerated(0.07) probably_damaging(0.935) TCGA-D5-6534-01 2 242035283 242035283 T G MTERFD2 3'UTR 0.19 TCGA-D5-6534-01 2 27430272 27430272 C T SLC5A6 Missense_Mutation p.V83M 0.19 deleterious(0) probably_damaging(0.997) TCGA-D5-6534-01 2 89986821 89986821 C G IGKV2D-29 Silent p.T34T 0.16 TCGA-D5-6534-01 2 97357241 97357241 C T FER1L5 RNA 0.14 TCGA-D5-6534-01 3 122575151 122575151 C T DIRC2 Intron 0.11 TCGA-D5-6534-01 3 141697513 141697513 T G TFDP2 Missense_Mutation p.K123T 0.10 deleterious(0.01) probably_damaging(0.94) TCGA-D5-6534-01 3 142840743 142840743 G A CHST2 Missense_Mutation p.R362Q 0.20 tolerated(0.1) possibly_damaging(0.469) TCGA-D5-6534-01 3 143185905 143185905 G T SLC9A9 Silent p.T481T 0.06 TCGA-D5-6534-01 3 164724730 164724730 C T SI Missense_Mutation p.R1427K 0.11 tolerated(0.16) benign(0.318) TCGA-D5-6534-01 3 192125814 192125814 C T FGF12 Missense_Mutation p.E67K 0.09 deleterious(0.01) benign(0.08) TCGA-D5-6534-01 3 23541206 23541206 C A UBE2E2 Missense_Mutation p.P112Q 0.07 tolerated(0.19) benign(0.025) TCGA-D5-6534-01 3 69088774 69088774 C A TMF1 Missense_Mutation p.E585D 0.09 tolerated(0.14) benign(0.099) TCGA-D5-6534-01 3 88041358 88041358 C A HTR1F 3'UTR 0.07 TCGA-D5-6534-01 4 100542277 100542277 T G MTTP Missense_Mutation p.L801R 0.10 deleterious(0.03) benign(0.379) TCGA-D5-6534-01 4 101396238 101396238 C A EMCN Missense_Mutation p.M72I 0.14 deleterious(0.02) benign(0.007) TCGA-D5-6534-01 4 17806350 17806350 T G DCAF16 5'UTR 0.11 TCGA-D5-6534-01 4 22403156 22403156 C G GPR125 Missense_Mutation p.K793N 0.19 deleterious(0) probably_damaging(0.999) TCGA-D5-6534-01 4 46264139 46264139 G A GABRA2 Missense_Mutation p.T288I 0.12 deleterious(0) probably_damaging(0.993) TCGA-D5-6534-01 4 47578797 47578797 T G ATP10D Missense_Mutation p.V1125G 0.14 deleterious(0) probably_damaging(0.999) TCGA-D5-6534-01 4 55604681 55604681 C T KIT Silent p.T963T 0.14 TCGA-D5-6534-01 4 5862883 5862883 G A CRMP1 Silent p.N175N 0.14 TCGA-D5-6534-01 4 73013286 73013286 C A NPFFR2 Missense_Mutation p.F442L 0.17 deleterious(0.04) possibly_damaging(0.701) TCGA-D5-6534-01 4 83277964 83277964 G A HNRNPD Missense_Mutation p.R280C 0.19 tolerated(0.19) probably_damaging(0.988) TCGA-D5-6534-01 5 128864367 128864367 C A ADAMTS19 Missense_Mutation p.T436K 0.17 deleterious(0.02) benign(0.344) TCGA-D5-6534-01 5 138269634 138269634 G A CTNNA1 Nonsense_Mutation p.W859* 0.14 TCGA-D5-6534-01 5 140683389 140683389 G A SLC25A2 Missense_Mutation p.A15V 0.18 deleterious(0) probably_damaging(0.937) TCGA-D5-6534-01 5 140745594 140745594 C T PCDHGA5 Missense_Mutation p.A566V 0.21 tolerated_low_confidence(0.11) benign(0.031) TCGA-D5-6534-01 5 145493661 145493661 G A LARS 3'UTR 0.21 TCGA-D5-6534-01 5 149324192 149324192 C T PDE6A Silent p.S15S 0.25 TCGA-D5-6534-01 5 33936757 33936757 G A RXFP3 5'UTR 0.18 TCGA-D5-6534-01 5 35876484 35876484 C T IL7R Silent p.L426L 0.13 TCGA-D5-6534-01 5 482201 482201 G A SLC9A3 Silent p.N476N 0.12 TCGA-D5-6534-01 5 5319209 5319209 C T ADAMTS16 Silent p.Y1211Y 0.18 TCGA-D5-6534-01 6 146350842 146350842 C T GRM1 Silent p.P63P 0.16 TCGA-D5-6534-01 6 152671309 152671309 G T SYNE1 Missense_Mutation p.H3965Q 0.15 benign(0.008) TCGA-D5-6534-01 6 29080233 29080233 G T OR2J3 Missense_Mutation p.R189L 0.14 deleterious(0.01) benign(0.005) TCGA-D5-6534-01 6 39398844 39398844 T C KIF6 Missense_Mutation p.Q580R 0.15 tolerated(0.21) benign(0.015) TCGA-D5-6534-01 6 51618115 51618115 C T PKHD1 Missense_Mutation p.R2945H 0.16 tolerated(0.63) benign(0.001) TCGA-D5-6534-01 6 75823012 75823012 A G COL12A1 Missense_Mutation p.S2620P 0.08 benign(0.362) TCGA-D5-6534-01 6 80982870 80982870 C A BCKDHB Silent p.R324R 0.14 TCGA-D5-6534-01 6 89888635 89888635 C A GABRR1 Nonsense_Mutation p.E432* 0.17 TCGA-D5-6534-01 7 13975476 13975476 G C ETV1 Silent p.P137P 0.16 TCGA-D5-6534-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.14 deleterious(0) probably_damaging(0.967) TCGA-D5-6534-01 7 142573370 142573370 C T TRPV6 Missense_Mutation p.G325R 0.16 deleterious(0) probably_damaging(0.996) TCGA-D5-6534-01 7 150217095 150217095 C T GIMAP7 Silent p.I11I 0.27 TCGA-D5-6534-01 7 33397474 33397474 G A BBS9 Silent p.P520P 0.07 TCGA-D5-6534-01 7 37264482 37264482 A C ELMO1 Splice_Site p.X234_splice 0.16 TCGA-D5-6534-01 7 37780679 37780680 - T GPR141 Frame_Shift_Ins p.I231Yfs*15 0.13 TCGA-D5-6534-01 7 44179407 44179407 G A MYL7 Silent p.S117S 0.11 TCGA-D5-6534-01 7 73151653 73151653 A T ABHD11 Missense_Mutation p.F177L 0.14 tolerated(0.19) benign(0.096) TCGA-D5-6534-01 7 82584183 82584183 A G PCLO Missense_Mutation p.I2029T 0.21 unknown(0) TCGA-D5-6534-01 8 116427034 116427034 C A TRPS1 Silent p.L1034L 0.15 TCGA-D5-6534-01 8 121554063 121554063 T G SNTB1 Missense_Mutation p.K504T 0.14 tolerated(0.12) benign(0.01) TCGA-D5-6534-01 8 125072565 125072565 G - FER1L6 Intron 0.13 TCGA-D5-6534-01 8 133192539 133192539 A G KCNQ3 Silent p.A214A 0.13 TCGA-D5-6534-01 8 143845966 143845966 G A LYNX1 3'UTR 0.12 TCGA-D5-6534-01 8 144680391 144680392 - CAA TIGD5 In_Frame_Ins p.G106_G107insQ 0.19 TCGA-D5-6534-01 8 2048808 2048808 T G MYOM2 Silent p.T861T 0.21 TCGA-D5-6534-01 8 67929941 67929941 A T PPP1R42 Missense_Mutation p.N14K 0.18 tolerated(0.19) benign(0.002) TCGA-D5-6534-01 8 91013773 91013773 G T DECR1 Missense_Mutation p.G18V 0.12 tolerated_low_confidence(0.4) benign(0) TCGA-D5-6534-01 8 94747588 94747588 G A RBM12B Missense_Mutation p.R351C 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6534-01 8 97156941 97156941 C T GDF6 Silent p.L406L 0.16 TCGA-D5-6534-01 9 100756916 100756916 C T ANP32B Nonsense_Mutation p.R20* 0.17 TCGA-D5-6534-01 9 104188877 104188877 C T ALDOB Missense_Mutation p.G195E 0.16 deleterious(0.01) probably_damaging(1) TCGA-D5-6534-01 9 131600067 131600067 C T CCBL1 Missense_Mutation p.G155D 0.19 tolerated(0.38) benign(0.001) TCGA-D5-6534-01 9 131708693 131708693 C T DOLK Missense_Mutation p.R297H 0.10 deleterious(0) probably_damaging(0.999) TCGA-D5-6534-01 9 138517935 138517935 C A GLT6D1 Silent p.L79L 0.18 TCGA-D5-6534-01 9 139402427 139402427 G A NOTCH1 Silent p.L1164L 0.17 TCGA-D5-6534-01 9 140325687 140325687 G T NOXA1 Splice_Site p.X233_splice 0.22 TCGA-D5-6534-01 9 140952653 140952653 A T CACNA1B Missense_Mutation p.Q1420L 0.16 deleterious(0) possibly_damaging(0.908) TCGA-D5-6534-01 9 66465851 66465851 A C RP11-262H14.1 RNA 0.23 TCGA-D5-6534-01 9 88207578 88207578 T G AGTPBP1 Missense_Mutation p.K782T 0.16 deleterious(0.01) possibly_damaging(0.712) TCGA-D5-6534-01 X 100169997 100169997 T G XKRX Missense_Mutation p.K227T 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6534-01 X 111003080 111003080 G T ALG13 Silent p.V1089V 0.14 TCGA-D5-6534-01 X 138678729 138678729 G C MCF2 Nonsense_Mutation p.Y828* 0.19 TCGA-D5-6534-01 X 144910963 144910963 G A TMEM257 3'UTR 0.09 TCGA-D5-6534-01 X 151814017 151814018 TA - GABRQ Frame_Shift_Del p.Y90Cfs*5 0.14 TCGA-D5-6534-01 X 152915708 152915708 C A DUSP9 Missense_Mutation p.S368Y 0.27 tolerated(0.08) possibly_damaging(0.862) TCGA-D5-6534-01 X 153906483 153906483 C A GAB3 Missense_Mutation p.W579L 0.14 deleterious(0) probably_damaging(0.999) TCGA-D5-6534-01 X 46433801 46433801 C T CHST7 Silent p.D145D 0.13 TCGA-D5-6534-01 X 48557330 48557330 G A SUV39H1 Silent p.L19L 0.21 TCGA-D5-6534-01 X 51488767 51488767 G A GSPT2 3'UTR 0.13 TCGA-D5-6534-01 X 5810991 5810991 A C NLGN4X Missense_Mutation p.L773R 0.12 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-D5-6534-01 X 70316625 70316625 G A FOXO4 Missense_Mutation p.G83R 0.11 tolerated(0.18) benign(0.013) TCGA-D5-6534-01 X 73963813 73963813 C G KIAA2022 Missense_Mutation p.M193I 0.20 tolerated(0.95) benign(0.001) TCGA-D5-6534-01 X 75650069 75650069 C G MAGEE1 Silent p.G582G 0.16 TCGA-D5-6534-01 X 79979332 79979332 G A BRWD3 Missense_Mutation p.S522L 0.12 deleterious(0.04) probably_damaging(0.99) TCGA-D5-6535-01 10 112839635 112839635 A G ADRA2A 3'UTR 0.23 TCGA-D5-6535-01 10 26455019 26455019 C T MYO3A Missense_Mutation p.S1008L 0.18 tolerated(0.66) benign(0.008) TCGA-D5-6535-01 10 50724637 50724637 A G ERCC6-PGBD3 Missense_Mutation p.L643S 0.41 tolerated_low_confidence(0.05) unknown(0) TCGA-D5-6535-01 10 60145332 60145332 G C TFAM Missense_Mutation p.G9R 0.29 tolerated(0.08) benign(0.08) TCGA-D5-6535-01 10 69832693 69832707 CATGTGTACACTGTT - HERC4 In_Frame_Del p.T54_C58del 0.09 TCGA-D5-6535-01 10 81923861 81923861 G A ANXA11 Silent p.L299L 0.21 TCGA-D5-6535-01 11 10797129 10797129 C A CTR9 Nonsense_Mutation p.S1015* 0.10 TCGA-D5-6535-01 11 111783620 111783620 C T HSPB2 Missense_Mutation p.R23C 0.18 deleterious(0) possibly_damaging(0.749) TCGA-D5-6535-01 11 113105856 113105856 G T NCAM1 Missense_Mutation p.A648S 0.24 tolerated(0.71) benign(0.022) TCGA-D5-6535-01 11 117651280 117651280 C T DSCAML1 Missense_Mutation p.D158N 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-D5-6535-01 11 126145996 126145996 G A FOXRED1 Missense_Mutation p.A285T 0.25 deleterious(0.02) benign(0.305) TCGA-D5-6535-01 11 51412061 51412061 A C OR4A5 Missense_Mutation p.L112R 0.05 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-D5-6535-01 11 5364576 5364576 A T OR51B5 Missense_Mutation p.F60Y 0.25 deleterious(0) probably_damaging(0.982) TCGA-D5-6535-01 11 61511712 61511712 C T DAGLA Silent p.L960L 0.24 TCGA-D5-6535-01 11 63990890 63990890 C A FERMT3 Silent p.R644R 0.29 TCGA-D5-6535-01 11 65422100 65422100 C T RELA Missense_Mutation p.V469I 0.50 tolerated_low_confidence(1) possibly_damaging(0.461) TCGA-D5-6535-01 11 75298129 75298129 G A MAP6 Missense_Mutation p.T806M 0.49 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-D5-6535-01 12 101750765 101750765 C T UTP20 Missense_Mutation p.R1866C 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6535-01 12 102813295 102813295 T C IGF1 Missense_Mutation p.T132A 0.09 tolerated(1) benign(0.001) TCGA-D5-6535-01 12 113573295 113573295 G A RASAL1 5'UTR 0.19 TCGA-D5-6535-01 12 114793771 114793771 G A TBX5 Missense_Mutation p.R375W 0.13 deleterious(0) probably_damaging(0.993) TCGA-D5-6535-01 12 117710226 117710226 G A NOS1 Silent p.R601R 0.66 TCGA-D5-6535-01 12 123200096 123200096 A G HCAR3 3'UTR 0.07 TCGA-D5-6535-01 12 124315103 124315103 G T DNAH10 Nonsense_Mutation p.E1350* 0.32 TCGA-D5-6535-01 12 1920931 1920931 G A CACNA2D4 Intron 0.28 TCGA-D5-6535-01 12 22025634 22025634 C G ABCC9 Missense_Mutation p.G708A 0.15 deleterious(0) probably_damaging(0.999) TCGA-D5-6535-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.75 deleterious(0) benign(0.361) TCGA-D5-6535-01 12 31242360 31242360 G A DDX11 Silent p.V272V 0.16 TCGA-D5-6535-01 12 41327628 41327628 G T CNTN1 Missense_Mutation p.E311D 0.18 deleterious(0.01) probably_damaging(0.915) TCGA-D5-6535-01 12 42860180 42860180 T G PRICKLE1 Silent p.I197I 0.11 TCGA-D5-6535-01 12 51888739 51888739 G A SLC4A8 Missense_Mutation p.R927H 0.21 deleterious(0) probably_damaging(0.958) TCGA-D5-6535-01 12 56847476 56847476 C T MIP Missense_Mutation p.V142M 0.27 deleterious(0) probably_damaging(0.977) TCGA-D5-6535-01 12 57108427 57108427 C T NACA Missense_Mutation p.E749K 0.43 deleterious_low_confidence(0.01) benign(0.302) TCGA-D5-6535-01 12 58112033 58112033 G A OS9 Missense_Mutation p.M413I 0.21 tolerated(0.2) benign(0) TCGA-D5-6535-01 12 63543648 63543648 G A AVPR1A Silent p.T323T 0.15 TCGA-D5-6535-01 12 93322888 93322888 G A EEA1 5'UTR 0.28 TCGA-D5-6535-01 13 100617981 100617981 C T ZIC5 Missense_Mutation p.D548N 0.21 deleterious(0) probably_damaging(0.989) TCGA-D5-6535-01 13 25744347 25744347 C T AMER2 Missense_Mutation p.E471K 0.33 tolerated(0.06) possibly_damaging(0.823) TCGA-D5-6535-01 13 39343715 39343715 G A FREM2 Missense_Mutation p.S1804N 0.19 deleterious(0.04) probably_damaging(0.96) TCGA-D5-6535-01 13 41239759 41239759 G C FOXO1 Missense_Mutation p.F197L 0.17 deleterious(0.01) possibly_damaging(0.882) TCGA-D5-6535-01 13 41706014 41706014 C G KBTBD6 Missense_Mutation p.E212Q 0.15 tolerated(0.37) probably_damaging(0.978) TCGA-D5-6535-01 13 47279246 47279246 C T LRCH1 Missense_Mutation p.P482S 0.35 tolerated(0.11) possibly_damaging(0.805) TCGA-D5-6535-01 13 49282398 49282398 C T CYSLTR2 3'UTR 0.16 TCGA-D5-6535-01 13 49705438 49705438 G A FNDC3A Missense_Mutation p.V140M 0.34 tolerated(0.08) benign(0.14) TCGA-D5-6535-01 13 51825625 51825625 C T FAM124A Missense_Mutation p.A77V 0.35 tolerated(0.43) benign(0.059) TCGA-D5-6535-01 13 61102708 61102708 G A TDRD3 Missense_Mutation p.G450D 0.27 tolerated(0.29) benign(0.007) TCGA-D5-6535-01 13 72440149 72440149 C T DACH1 Silent p.L253L 0.20 TCGA-D5-6535-01 13 77619508 77619508 G A MYCBP2 3'UTR 0.31 TCGA-D5-6535-01 13 88329650 88329650 C A SLITRK5 Missense_Mutation p.S669R 0.18 deleterious(0.01) benign(0.342) TCGA-D5-6535-01 13 92408676 92408676 T A GPC5 Splice_Site p.X427_splice 0.29 TCGA-D5-6535-01 14 24884450 24884450 C T NYNRIN Silent p.T1165T 0.28 TCGA-D5-6535-01 14 63246610 63246610 T C KCNH5 Missense_Mutation p.K619E 0.29 deleterious(0.03) possibly_damaging(0.6) TCGA-D5-6535-01 14 79434678 79434678 G A NRXN3 Missense_Mutation p.R671H 0.30 deleterious(0.02) probably_damaging(0.937) TCGA-D5-6535-01 14 80963872 80963872 T C CEP128 Missense_Mutation p.T1079A 0.16 tolerated(0.3) benign(0.003) TCGA-D5-6535-01 14 86091159 86091159 A G FLRT2 3'UTR 0.30 TCGA-D5-6535-01 16 1828596 1828596 G A SPSB3 Silent p.S48S 0.34 TCGA-D5-6535-01 16 19129127 19129127 A C ITPRIPL2 3'UTR 0.39 TCGA-D5-6535-01 16 20797537 20797537 C T ACSM3 Intron 0.20 TCGA-D5-6535-01 16 23716406 23716406 T C ERN2 Missense_Mutation p.T266A 0.39 tolerated(0.71) benign(0.001) TCGA-D5-6535-01 16 30748574 30748574 G C SRCAP Missense_Mutation p.E2405Q 0.21 probably_damaging(0.932) TCGA-D5-6535-01 16 31309237 31309237 G A ITGAM Missense_Mutation p.G558R 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6535-01 16 55880730 55880730 C A CES5A Missense_Mutation p.K511N 0.16 tolerated(0.1) probably_damaging(0.932) TCGA-D5-6535-01 16 69370574 69370574 C T COG8 Missense_Mutation p.R140Q 0.26 deleterious(0.01) benign(0.06) TCGA-D5-6535-01 16 84101273 84101273 T C MBTPS1 Missense_Mutation p.R743G 0.12 deleterious(0) probably_damaging(0.933) TCGA-D5-6535-01 16 86544265 86544265 G A FOXF1 Silent p.S30S 0.32 TCGA-D5-6535-01 17 10258257 10258257 G T MYH13 Missense_Mutation p.H286N 0.32 deleterious(0) possibly_damaging(0.709) TCGA-D5-6535-01 17 11984693 11984693 G A MAP2K4 Missense_Mutation p.S80N 0.59 tolerated(0.36) benign(0.287) TCGA-D5-6535-01 17 1629795 1629795 G T WDR81 Silent p.V514V 0.33 TCGA-D5-6535-01 17 3101704 3101704 G T OR1A2 Missense_Mutation p.A298S 0.33 deleterious(0.01) benign(0.126) TCGA-D5-6535-01 17 33806245 33806245 G A SLFN12L Silent p.F328F 0.18 TCGA-D5-6535-01 17 40318433 40318433 G C KCNH4 Silent p.T574T 0.20 TCGA-D5-6535-01 17 40635124 40635124 A G ATP6V0A1 Missense_Mutation p.N269S 0.22 tolerated(0.62) probably_damaging(0.999) TCGA-D5-6535-01 17 48457703 48457703 C T EME1 Silent p.F472F 0.23 TCGA-D5-6535-01 17 48917438 48917438 C T WFIKKN2 Silent p.N263N 0.11 TCGA-D5-6535-01 17 74023410 74023410 G C EVPL 5'UTR 0.40 TCGA-D5-6535-01 17 75196732 75196732 G C SEC14L1 Missense_Mutation p.G329A 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6535-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.59 deleterious(0) probably_damaging(0.997) TCGA-D5-6535-01 17 76970857 76970857 C T LGALS3BP Missense_Mutation p.E97K 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6535-01 17 79478006 79478006 C T ACTG1 Missense_Mutation p.D311N 0.20 deleterious_low_confidence(0.02) benign(0.014) TCGA-D5-6535-01 18 14748569 14748569 G A ANKRD30B Missense_Mutation p.V51I 0.26 deleterious(0.02) possibly_damaging(0.79) TCGA-D5-6535-01 19 14000958 14000958 T G C19orf57 Silent p.L237L 0.36 TCGA-D5-6535-01 19 17758092 17758092 C T UNC13A Missense_Mutation p.A676T 0.15 deleterious(0) probably_damaging(0.999) TCGA-D5-6535-01 19 17937404 17937404 C T JAK3 3'UTR 0.19 TCGA-D5-6535-01 19 21609308 21609308 G A ZNF493 3'UTR 0.15 TCGA-D5-6535-01 19 22271025 22271025 C A ZNF257 Nonsense_Mutation p.S158* 0.37 TCGA-D5-6535-01 19 2717753 2717753 C T DIRAS1 Missense_Mutation p.V18M 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6535-01 19 33168745 33168745 G C RGS9BP 3'UTR 0.13 TCGA-D5-6535-01 19 36269977 36269977 G A ARHGAP33 Missense_Mutation p.G151E 0.43 tolerated_low_confidence(0.07) probably_damaging(0.969) TCGA-D5-6535-01 19 37382606 37382606 G T ZNF829 Missense_Mutation p.Q444K 0.12 tolerated(0.28) probably_damaging(0.915) TCGA-D5-6535-01 19 39805558 39805558 C T LRFN1 Missense_Mutation p.R140H 0.38 tolerated(0.49) probably_damaging(0.999) TCGA-D5-6535-01 19 40095978 40095978 G T LGALS13 Missense_Mutation p.D85Y 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-D5-6535-01 19 40399723 40399723 G A FCGBP Missense_Mutation p.A1991V 0.31 possibly_damaging(0.798) TCGA-D5-6535-01 19 44423050 44423050 C A ZNF45 Missense_Mutation p.K69N 0.16 tolerated(0.12) benign(0.112) TCGA-D5-6535-01 19 47259843 47259843 G A FKRP Missense_Mutation p.R379Q 0.26 tolerated(0.17) possibly_damaging(0.738) TCGA-D5-6535-01 19 49934372 49934372 G T SLC17A7 Missense_Mutation p.A430D 0.18 deleterious(0) probably_damaging(0.967) TCGA-D5-6535-01 19 53611945 53611945 C T ZNF415 Silent p.V451V 0.23 TCGA-D5-6535-01 19 54803282 54803282 C A LILRA3 Missense_Mutation p.S132I 0.37 deleterious(0) probably_damaging(0.996) TCGA-D5-6535-01 19 56189961 56189961 G A EPN1 Missense_Mutation p.A101T 0.18 deleterious_low_confidence(0) unknown(0) TCGA-D5-6535-01 19 57059269 57059269 C A ZFP28 Missense_Mutation p.P174Q 0.12 deleterious(0.02) possibly_damaging(0.58) TCGA-D5-6535-01 19 57641884 57641884 G T USP29 Missense_Mutation p.S614I 0.20 deleterious(0.01) probably_damaging(0.925) TCGA-D5-6535-01 19 58197991 58197991 T C ZNF551 Silent p.I116I 0.21 TCGA-D5-6535-01 19 58437771 58437771 C A ZNF418 Missense_Mutation p.C593F 0.36 deleterious(0) probably_damaging(0.99) TCGA-D5-6535-01 1 151109481 151109481 G T SEMA6C Missense_Mutation p.H276N 0.16 deleterious(0.01) benign(0.216) TCGA-D5-6535-01 1 151773297 151773297 G A LINGO4 3'UTR 0.48 TCGA-D5-6535-01 1 153902731 153902731 C T DENND4B 3'UTR 0.10 TCGA-D5-6535-01 1 15392182 15392182 C T KAZN Silent p.F385F 0.24 TCGA-D5-6535-01 1 161022560 161022560 G A ARHGAP30 Missense_Mutation p.S231L 0.20 tolerated(0.1) benign(0.005) TCGA-D5-6535-01 1 169390670 169390670 G C CCDC181 Nonsense_Mutation p.Y333* 0.05 TCGA-D5-6535-01 1 197128511 197128511 G T ZBTB41 Missense_Mutation p.S903Y 0.16 deleterious_low_confidence(0) benign(0.425) TCGA-D5-6535-01 1 223177767 223177767 C T DISP1 Missense_Mutation p.L1010F 0.37 deleterious(0.02) possibly_damaging(0.812) TCGA-D5-6535-01 1 235715440 235715440 C T GNG4 Missense_Mutation p.R66H 0.59 deleterious(0) probably_damaging(0.988) TCGA-D5-6535-01 1 243327982 243327982 T G CEP170 Silent p.R1094R 0.13 TCGA-D5-6535-01 1 243736254 243736254 C T AKT3 Missense_Mutation p.G265R 0.13 tolerated(0.67) benign(0.009) TCGA-D5-6535-01 1 25715481 25715481 C T RHCE Missense_Mutation p.A309T 0.34 tolerated(0.07) possibly_damaging(0.905) TCGA-D5-6535-01 1 55279565 55279565 G T C1orf177 Missense_Mutation p.V281F 0.32 tolerated(0.13) possibly_damaging(0.824) TCGA-D5-6535-01 1 9791822 9791822 C T CLSTN1 Missense_Mutation p.A854T 0.44 deleterious(0.03) benign(0.109) TCGA-D5-6535-01 20 33511190 33511190 C G ACSS2 Missense_Mutation p.T551R 0.31 tolerated(0.32) possibly_damaging(0.557) TCGA-D5-6535-01 20 8628585 8628585 G A PLCB1 Missense_Mutation p.R168H 0.25 deleterious(0) possibly_damaging(0.731) TCGA-D5-6535-01 21 11039317 11039317 T G BAGE2 RNA 0.04 TCGA-D5-6535-01 21 11039323 11039323 T G BAGE2 RNA 0.04 TCGA-D5-6535-01 21 30412971 30412971 T G USP16 Silent p.T331T 0.26 TCGA-D5-6535-01 21 42754483 42754483 G A MX2 Missense_Mutation p.G242R 0.57 deleterious(0) possibly_damaging(0.527) TCGA-D5-6535-01 22 19751837 19751837 C T TBX1 Silent p.D224D 0.30 TCGA-D5-6535-01 22 24621549 24621549 C T GGT5 Missense_Mutation p.R434Q 0.34 deleterious(0) possibly_damaging(0.658) TCGA-D5-6535-01 22 36623995 36623995 C A APOL2 Missense_Mutation p.A157S 0.20 tolerated(0.07) benign(0.136) TCGA-D5-6535-01 22 38219743 38219743 C T GALR3 Silent p.S110S 0.33 TCGA-D5-6535-01 22 42422767 42422767 C A WBP2NL Intron 0.27 TCGA-D5-6535-01 2 10101228 10101228 G T GRHL1 Missense_Mutation p.R111I 0.32 deleterious(0.03) possibly_damaging(0.794) TCGA-D5-6535-01 2 131801995 131801995 C T ARHGEF4 Silent p.L575L 0.28 TCGA-D5-6535-01 2 132508331 132508331 A C C2orf27A 5'UTR 0.22 TCGA-D5-6535-01 2 136499490 136499490 G A UBXN4 5'UTR 0.25 TCGA-D5-6535-01 2 16085670 16085670 G A MYCN Silent p.V282V 0.26 TCGA-D5-6535-01 2 163693153 163693153 G T KCNH7 Missense_Mutation p.D67E 0.26 tolerated(0.09) benign(0.388) TCGA-D5-6535-01 2 166900236 166900236 C T SCN1A Silent p.S662S 0.28 TCGA-D5-6535-01 2 171258106 171258106 C T MYO3B Silent p.D678D 0.23 TCGA-D5-6535-01 2 179419696 179419696 G T TTN Missense_Mutation p.S29497Y 0.26 TCGA-D5-6535-01 2 179444652 179444652 G T TTN Intron 0.28 TCGA-D5-6535-01 2 190728522 190728522 G C PMS1 Missense_Mutation p.R637T 0.23 tolerated(0.14) benign(0.042) TCGA-D5-6535-01 2 202744856 202744856 C T CDK15 Silent p.S388S 0.23 TCGA-D5-6535-01 2 225695285 225695285 C T DOCK10 Silent p.Q1003Q 0.24 TCGA-D5-6535-01 2 241631577 241631577 G A AQP12A Silent p.A70A 0.27 TCGA-D5-6535-01 2 62449482 62449482 A G B3GNT2 Missense_Mutation p.I43V 0.20 tolerated(0.44) benign(0.007) TCGA-D5-6535-01 2 63272302 63272302 G T EHBP1 Missense_Mutation p.A1198S 0.23 tolerated(0.16) probably_damaging(1) TCGA-D5-6535-01 2 98375357 98375357 G A TMEM131 Missense_Mutation p.T1789I 0.25 deleterious_low_confidence(0.01) benign(0.069) TCGA-D5-6535-01 3 121414230 121414230 T G GOLGB1 Missense_Mutation p.T1714P 0.15 benign(0.005) TCGA-D5-6535-01 3 122060548 122060548 A G CSTA 3'UTR 0.20 TCGA-D5-6535-01 3 127783742 127783742 C A SEC61A1 Silent p.I213I 0.18 TCGA-D5-6535-01 3 138289216 138289216 C A CEP70 Missense_Mutation p.A137S 0.37 deleterious(0.01) benign(0.046) TCGA-D5-6535-01 3 157155435 157155435 G A PTX3 Silent p.L88L 0.22 TCGA-D5-6535-01 3 183887875 183887875 C T DVL3 Missense_Mutation p.P527L 0.30 deleterious(0) probably_damaging(0.931) TCGA-D5-6535-01 3 192973470 192973470 T C HRASLS Missense_Mutation p.Y116H 0.18 tolerated(0.06) benign(0.048) TCGA-D5-6535-01 3 195000048 195000048 T A ACAP2 3'UTR 0.18 TCGA-D5-6535-01 3 31712324 31712324 G T OSBPL10 Missense_Mutation p.F626L 0.27 deleterious(0) possibly_damaging(0.734) TCGA-D5-6535-01 3 9032486 9032486 G A SRGAP3 Missense_Mutation p.R866C 0.36 deleterious(0) possibly_damaging(0.65) TCGA-D5-6535-01 3 93769713 93769713 C G ARL13B Missense_Mutation p.P396R 0.09 deleterious(0) possibly_damaging(0.786) TCGA-D5-6535-01 4 103228756 103228756 C T SLC39A8 Missense_Mutation p.G130E 0.17 deleterious(0.03) probably_damaging(0.98) TCGA-D5-6535-01 4 119649729 119649729 G T SEC24D Missense_Mutation p.P982Q 0.14 tolerated(0.35) probably_damaging(0.981) TCGA-D5-6535-01 4 155749065 155749065 G A RBM46 Missense_Mutation p.S483N 0.41 tolerated(0.19) benign(0.005) TCGA-D5-6535-01 4 16510259 16510259 T A LDB2 Missense_Mutation p.T264S 0.21 tolerated(0.49) benign(0.002) TCGA-D5-6535-01 4 174298504 174298504 T G SAP30 3'UTR 0.21 TCGA-D5-6535-01 4 17825372 17825372 T G NCAPG Missense_Mutation p.D454E 0.22 deleterious(0) benign(0.313) TCGA-D5-6535-01 4 17844964 17844964 G T NCAPG Missense_Mutation p.M988I 0.44 tolerated(0.3) benign(0.028) TCGA-D5-6535-01 4 57389866 57389866 C T ARL9 Missense_Mutation p.L66F 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-D5-6535-01 4 71644104 71644104 T C RUFY3 Silent p.L281L 0.24 TCGA-D5-6535-01 4 85738560 85738560 C G WDFY3 Missense_Mutation p.K624N 0.47 deleterious(0) probably_damaging(0.952) TCGA-D5-6535-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.53 TCGA-D5-6535-01 5 140230608 140230608 A G PCDHA9 Intron 0.17 TCGA-D5-6535-01 5 140615715 140615715 G A PCDHB18 RNA 0.21 TCGA-D5-6535-01 5 168244467 168244467 G T SLIT3 Missense_Mutation p.R211S 0.23 deleterious(0) probably_damaging(0.997) TCGA-D5-6535-01 5 175110378 175110378 C T HRH2 Missense_Mutation p.R48W 0.27 deleterious(0) probably_damaging(0.995) TCGA-D5-6535-01 5 175816424 175816424 A G HIGD2A Missense_Mutation p.I83V 0.27 tolerated(0.41) probably_damaging(0.998) TCGA-D5-6535-01 5 178540896 178540896 C T ADAMTS2 Missense_Mutation p.R1203Q 0.06 tolerated_low_confidence(0.26) benign(0.014) TCGA-D5-6535-01 5 179192375 179192375 C T MAML1 Nonsense_Mutation p.Q122* 0.26 TCGA-D5-6535-01 5 52397991 52397991 A G MOCS2 Silent p.L54L 0.22 TCGA-D5-6535-01 5 7414830 7414830 G T ADCY2 Missense_Mutation p.A119S 0.19 tolerated(0.14) benign(0.011) TCGA-D5-6535-01 5 89985682 89985682 A C GPR98 Missense_Mutation p.E2165D 0.54 probably_damaging(0.95) TCGA-D5-6535-01 6 10959026 10959026 A C SYCP2L Silent p.R725R 0.06 TCGA-D5-6535-01 6 117861917 117861917 C A DCBLD1 Silent p.P396P 0.38 TCGA-D5-6535-01 6 125623117 125623117 G T HDDC2 5'UTR 0.50 TCGA-D5-6535-01 6 165715177 165715177 C T C6orf118 Missense_Mutation p.A212T 0.64 tolerated(0.31) benign(0.223) TCGA-D5-6535-01 6 26251989 26251989 C T HIST1H2BH Silent p.S37S 0.23 TCGA-D5-6535-01 6 31911072 31911073 - A CFB Frame_Shift_Ins p.T325Nfs*8 0.39 TCGA-D5-6535-01 6 36976607 36976607 C G FGD2 Intron 0.12 TCGA-D5-6535-01 6 72952108 72952108 T A RIMS1 Silent p.P683P 0.35 TCGA-D5-6535-01 6 73933437 73933437 G C KHDC1L 3'UTR 0.30 TCGA-D5-6535-01 6 74502393 74502393 C T CD109 Missense_Mutation p.R916W 0.29 deleterious(0) probably_damaging(0.954) TCGA-D5-6535-01 6 97052718 97052718 G T FHL5 Missense_Mutation p.K84N 0.22 deleterious(0.02) probably_damaging(1) TCGA-D5-6535-01 7 100061598 100061598 C G C7orf61 Missense_Mutation p.R17S 0.20 deleterious(0) benign(0.163) TCGA-D5-6535-01 7 104773506 104773506 C T SRPK2 Missense_Mutation p.R530Q 0.16 tolerated(0.78) benign(0.002) TCGA-D5-6535-01 7 139798694 139798694 G C KDM7A Missense_Mutation p.Q635E 0.19 tolerated(0.34) benign(0.002) TCGA-D5-6535-01 7 140710332 140710332 C T MRPS33 Silent p.V34V 0.18 TCGA-D5-6535-01 7 142829273 142829273 C A PIP Missense_Mutation p.Q22K 0.16 deleterious(0.03) benign(0.029) TCGA-D5-6535-01 7 21751390 21751390 G C DNAH11 Missense_Mutation p.E2306Q 0.16 probably_damaging(0.997) TCGA-D5-6535-01 7 48316056 48316056 G T ABCA13 Nonsense_Mutation p.E2265* 0.19 TCGA-D5-6535-01 7 56006832 56006832 T A ZNF713 Missense_Mutation p.F142L 0.22 tolerated(0.7) benign(0.001) TCGA-D5-6535-01 7 7278211 7278211 T C C1GALT1 Silent p.L182L 0.38 TCGA-D5-6535-01 7 73085581 73085581 C T VPS37D Missense_Mutation p.P211S 0.30 deleterious(0.01) probably_damaging(0.968) TCGA-D5-6535-01 7 75051156 75051156 G C POM121C Silent p.A793A 0.16 TCGA-D5-6535-01 7 97820972 97820972 G A LMTK2 Missense_Mutation p.A399T 0.15 tolerated(1) benign(0.043) TCGA-D5-6535-01 7 97911756 97911756 C G BRI3 Missense_Mutation p.P79R 0.49 deleterious(0) probably_damaging(0.999) TCGA-D5-6535-01 8 100711919 100711919 A C VPS13B Silent p.P2096P 0.19 TCGA-D5-6535-01 8 101272180 101272180 A C RNF19A Missense_Mutation p.S576R 0.41 deleterious(0) probably_damaging(0.983) TCGA-D5-6535-01 8 104955062 104955062 C T RIMS2 Missense_Mutation p.T870M 0.29 deleterious_low_confidence(0) possibly_damaging(0.547) TCGA-D5-6535-01 8 110488741 110488741 A C PKHD1L1 Missense_Mutation p.E2921A 0.24 tolerated(0.05) benign(0.034) TCGA-D5-6535-01 8 113662399 113662399 T G CSMD3 Missense_Mutation p.T1062P 0.37 deleterious(0.01) probably_damaging(0.962) TCGA-D5-6535-01 8 114326994 114326994 T G CSMD3 Missense_Mutation p.L69F 0.18 tolerated(0.32) benign(0.006) TCGA-D5-6535-01 8 116427174 116427174 C T TRPS1 Missense_Mutation p.V988I 0.17 deleterious(0.02) benign(0.132) TCGA-D5-6535-01 8 145559888 145559888 C T SCRT1 5'UTR 0.57 TCGA-D5-6535-01 8 28967452 28967452 A T KIF13B Missense_Mutation p.L1356I 0.42 deleterious(0.02) probably_damaging(0.927) TCGA-D5-6535-01 8 36768629 36768629 C T KCNU1 Missense_Mutation p.S838L 0.45 tolerated(0.32) benign(0.001) TCGA-D5-6535-01 8 41583312 41583312 C A ANK1 Silent p.L226L 0.69 TCGA-D5-6535-01 8 52232486 52232486 G A PXDNL Nonsense_Mutation p.R1453* 0.14 TCGA-D5-6535-01 8 59508169 59508169 C T NSMAF Nonsense_Mutation p.W645* 0.40 TCGA-D5-6535-01 8 67813619 67813619 G A MCMDC2 Intron 0.08 TCGA-D5-6535-01 9 101767294 101767294 T A COL15A1 Missense_Mutation p.S439T 0.24 tolerated_low_confidence(0.72) benign(0.001) TCGA-D5-6535-01 9 107646733 107646733 C A ABCA1 Missense_Mutation p.V93F 0.23 tolerated(0.1) benign(0.102) TCGA-D5-6535-01 9 113197581 113197581 C T SVEP1 Missense_Mutation p.D1610N 0.21 probably_damaging(0.995) TCGA-D5-6535-01 9 114553722 114553722 T C C9orf84 5'UTR 0.28 TCGA-D5-6535-01 9 135073621 135073621 G A NTNG2 Nonsense_Mutation p.W161* 0.51 TCGA-D5-6535-01 9 35736223 35736223 G A CREB3 Splice_Site p.X233_splice 0.25 TCGA-D5-6535-01 9 4741000 4741000 G C AK3 Missense_Mutation p.H30D 0.23 tolerated(0.78) benign(0.004) TCGA-D5-6535-01 9 6506354 6506354 G T UHRF2 3'UTR 0.28 TCGA-D5-6535-01 9 69423541 69423541 C T ANKRD20A4 Silent p.L613L 0.21 TCGA-D5-6535-01 9 73235024 73235024 G A TRPM3 Silent p.D687D 0.16 TCGA-D5-6535-01 9 74840701 74840704 GTAA - GDA Splice_Site p.X274_splice 0.52 TCGA-D5-6535-01 9 77614733 77614733 G T C9orf41 Missense_Mutation p.A215D 0.25 deleterious(0) probably_damaging(0.97) TCGA-D5-6535-01 9 82187616 82187616 C A TLE4 5'UTR 0.23 TCGA-D5-6535-01 X 113961346 113961346 A C HTR2C Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) benign(0.267) TCGA-D5-6535-01 X 120008998 120008998 C A CT47B1 Missense_Mutation p.G176V 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-D5-6535-01 X 129813703 129813703 G T ENOX2 Silent p.T120T 0.22 TCGA-D5-6535-01 X 142795558 142795558 G T SPANXN2 Missense_Mutation p.S40R 0.59 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D5-6535-01 X 149912838 149912838 G T MTMR1 Silent p.V485V 0.13 TCGA-D5-6535-01 X 36303827 36303827 A G CXorf30 Missense_Mutation p.T4A 0.29 tolerated(0.28) benign(0.033) TCGA-D5-6535-01 X 48925015 48925015 C T CCDC120 Silent p.A420A 0.32 TCGA-D5-6535-01 X 53267375 53267375 G A IQSEC2 Missense_Mutation p.R1077C 0.28 deleterious(0) probably_damaging(0.985) TCGA-D5-6536-01 10 102242025 102242025 C A WNT8B Intron 0.25 TCGA-D5-6536-01 10 105750487 105750487 T G SLK Missense_Mutation p.S69A 0.62 deleterious(0.01) probably_damaging(0.986) TCGA-D5-6536-01 10 106118264 106118264 C T CCDC147 Missense_Mutation p.R59C 0.69 deleterious(0) probably_damaging(0.988) TCGA-D5-6536-01 10 125528098 125528098 G A CPXM2 Missense_Mutation p.R415W 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6536-01 10 98145962 98145962 G A TLL2 Silent p.G621G 0.32 TCGA-D5-6536-01 11 118773196 118773196 C T BCL9L Missense_Mutation p.R419Q 0.66 probably_damaging(0.998) TCGA-D5-6536-01 11 18955575 18955575 C A MRGPRX1 Missense_Mutation p.V253F 0.75 tolerated(0.66) benign(0.006) TCGA-D5-6536-01 11 27017304 27017304 C A FIBIN 3'UTR 0.24 TCGA-D5-6536-01 11 33563946 33563946 C T KIAA1549L 5'UTR 0.84 TCGA-D5-6536-01 11 4790354 4790354 C T OR51F1 Missense_Mutation p.R265H 0.84 deleterious(0.02) benign(0.365) TCGA-D5-6536-01 11 55406124 55406124 A G OR4P4 Missense_Mutation p.I97M 0.26 tolerated(0.18) benign(0.006) TCGA-D5-6536-01 11 55594771 55594771 G A OR5L2 Missense_Mutation p.C26Y 0.25 tolerated(1) benign(0.021) TCGA-D5-6536-01 11 6422646 6422646 C T APBB1 Missense_Mutation p.R504Q 0.79 deleterious(0) probably_damaging(0.997) TCGA-D5-6536-01 11 66618552 66618552 C T PC Missense_Mutation p.E728K 0.49 tolerated(1) benign(0.019) TCGA-D5-6536-01 12 18836135 18836135 C T PLCZ1 3'UTR 0.32 TCGA-D5-6536-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.25 deleterious(0.03) benign(0.376) TCGA-D5-6536-01 12 26277849 26277849 T C BHLHE41 5'UTR 0.19 TCGA-D5-6536-01 12 65460509 65460509 A C WIF1 Missense_Mutation p.C214W 0.26 deleterious(0) probably_damaging(0.999) TCGA-D5-6536-01 12 6560025 6560025 C A CD27 Intron 0.32 TCGA-D5-6536-01 12 70004477 70004477 C T LRRC10 Missense_Mutation p.V48M 0.46 deleterious(0) benign(0.441) TCGA-D5-6536-01 12 71016383 71016383 C T PTPRB Silent p.T165T 0.36 TCGA-D5-6536-01 12 94575221 94575221 G T PLXNC1 Splice_Site p.X402_splice 0.32 TCGA-D5-6536-01 13 102568841 102568841 C T FGF14 Intron 0.14 TCGA-D5-6536-01 14 103941334 103941335 - C MARK3 Frame_Shift_Ins p.A425Sfs*19 0.15 TCGA-D5-6536-01 14 31778289 31778289 C G AL136418.1 5'Flank 0.34 TCGA-D5-6536-01 14 51194259 51194259 G C NIN Intron 0.32 TCGA-D5-6536-01 14 61446243 61446243 G A TRMT5 Missense_Mutation p.R125C 0.30 deleterious(0) probably_damaging(0.917) TCGA-D5-6536-01 14 66209079 66209079 A G FUT8 Missense_Mutation p.E560G 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-D5-6536-01 14 86091232 86091232 G T FLRT2 3'UTR 0.34 TCGA-D5-6536-01 14 94120134 94120134 C T UNC79 Missense_Mutation p.R1906C 0.35 deleterious(0) probably_damaging(0.927) TCGA-D5-6536-01 15 23931941 23931941 G A NDN Missense_Mutation p.R142C 0.39 deleterious(0) benign(0.232) TCGA-D5-6536-01 15 40587477 40587477 C T PLCB2 Missense_Mutation p.R569Q 0.19 tolerated(0.06) benign(0.022) TCGA-D5-6536-01 15 66607522 66607522 G A DIS3L Silent p.S321S 0.36 TCGA-D5-6536-01 15 76235885 76235885 T C NRG4 3'UTR 0.31 TCGA-D5-6536-01 15 89424692 89424692 G A HAPLN3 Missense_Mutation p.S130L 0.40 deleterious(0) probably_damaging(0.987) TCGA-D5-6536-01 15 99514362 99514362 T C PGPEP1L Missense_Mutation p.N16S 0.06 tolerated(1) benign(0.007) TCGA-D5-6536-01 16 15842022 15842022 C T MYH11 Missense_Mutation p.G695S 0.33 probably_damaging(1) TCGA-D5-6536-01 16 2229707 2229707 G A CASKIN1 Missense_Mutation p.P1221L 0.22 benign(0.004) TCGA-D5-6536-01 16 50830363 50830363 C T CYLD Missense_Mutation p.L939F 0.33 deleterious(0) probably_damaging(0.977) TCGA-D5-6536-01 16 56782147 56782147 A G NUP93 Intron 0.09 TCGA-D5-6536-01 16 90001459 90001459 C G TUBB3 Nonsense_Mutation p.Y200* 0.37 TCGA-D5-6536-01 17 30533975 30533975 T C RHOT1 Missense_Mutation p.I488T 0.39 tolerated(0.66) benign(0.001) TCGA-D5-6536-01 17 39122666 39122666 G A KRT39 Missense_Mutation p.T148I 0.32 deleterious(0.02) possibly_damaging(0.526) TCGA-D5-6536-01 17 73733407 73733407 G - ITGB4 Frame_Shift_Del p.E666Rfs*103 0.19 TCGA-D5-6536-01 18 25565698 25565698 G A CDH2 Missense_Mutation p.T590M 0.21 deleterious(0.02) probably_damaging(0.987) TCGA-D5-6536-01 18 56587359 56587359 C T ZNF532 Missense_Mutation p.R614C 0.49 deleterious(0) possibly_damaging(0.899) TCGA-D5-6536-01 19 15284979 15284979 G A NOTCH3 Missense_Mutation p.R1546C 0.36 deleterious(0.01) benign(0.175) TCGA-D5-6536-01 19 16045119 16045119 C T CYP4F11 Missense_Mutation p.V34I 0.43 tolerated(0.72) benign(0.002) TCGA-D5-6536-01 19 19372262 19372262 G A HAPLN4 Silent p.H38H 0.42 TCGA-D5-6536-01 19 2252588 2252588 G A JSRP1 Missense_Mutation p.R246W 0.41 deleterious(0.02) probably_damaging(0.942) TCGA-D5-6536-01 19 54783324 54783324 G A LILRB2 Silent p.R178R 0.37 TCGA-D5-6536-01 1 104234190 104234190 C T AMY1B Silent p.A307A 0.21 TCGA-D5-6536-01 1 119575473 119575473 C T WARS2 3'UTR 0.25 TCGA-D5-6536-01 1 149760029 149760029 C A FCGR1A Silent p.R139R 0.18 TCGA-D5-6536-01 1 152082786 152082786 C A TCHH Missense_Mutation p.K969N 0.22 unknown(0) TCGA-D5-6536-01 1 161719723 161719723 G A DUSP12 Silent p.E44E 0.19 TCGA-D5-6536-01 1 173470220 173470220 T - SLC9C2 3'UTR 0.13 TCGA-D5-6536-01 1 173545857 173545857 A G SLC9C2 Missense_Mutation p.V282A 0.24 deleterious(0.01) possibly_damaging(0.814) TCGA-D5-6536-01 1 175052996 175052996 C G TNN Missense_Mutation p.P387A 0.61 tolerated(0.06) benign(0.403) TCGA-D5-6536-01 1 186089171 186089171 C T HMCN1 Silent p.G4041G 0.59 TCGA-D5-6536-01 1 205138702 205138702 G A DSTYK Missense_Mutation p.R305C 0.67 tolerated(0.12) benign(0.002) TCGA-D5-6536-01 1 212519156 212519156 T A PPP2R5A Silent p.L195L 0.22 TCGA-D5-6536-01 1 212519157 212519157 T A PPP2R5A Missense_Mutation p.F196I 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6536-01 1 212519158 212519158 T A PPP2R5A Missense_Mutation p.F196Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-D5-6536-01 1 212970485 212970485 G T TATDN3 Missense_Mutation p.V69F 0.17 deleterious(0) benign(0.23) TCGA-D5-6536-01 1 223567909 223567909 G A C1orf65 Silent p.A364A 0.39 TCGA-D5-6536-01 1 38006255 38006255 G A SNIP1 Silent p.H143H 0.39 TCGA-D5-6536-01 1 91405233 91405233 C T ZNF644 Missense_Mutation p.D560N 0.27 tolerated(0.1) benign(0.012) TCGA-D5-6536-01 1 91405436 91405436 C T ZNF644 Missense_Mutation p.R492K 0.34 tolerated(0.16) probably_damaging(0.989) TCGA-D5-6536-01 1 91405495 91405495 C G ZNF644 Missense_Mutation p.E472D 0.31 tolerated(0.21) probably_damaging(0.983) TCGA-D5-6536-01 1 91405546 91405546 C A ZNF644 Silent p.R455R 0.31 TCGA-D5-6536-01 1 91405794 91405794 C G ZNF644 Missense_Mutation p.E373Q 0.28 tolerated(0.06) benign(0.11) TCGA-D5-6536-01 20 16730560 16730560 G T OTOR Missense_Mutation p.G90C 0.13 tolerated(0.17) benign(0.033) TCGA-D5-6536-01 20 17674341 17674341 G A BANF2 Missense_Mutation p.R3Q 0.48 deleterious_low_confidence(0) benign(0.417) TCGA-D5-6536-01 20 23433309 23433309 C T CST11 Missense_Mutation p.S47N 0.24 deleterious(0.03) benign(0.09) TCGA-D5-6536-01 20 35261049 35261049 G T SLA2 Missense_Mutation p.P111T 0.20 deleterious(0) probably_damaging(0.94) TCGA-D5-6536-01 20 43926891 43926891 C T MATN4 Missense_Mutation p.V449M 0.18 possibly_damaging(0.73) TCGA-D5-6536-01 21 19737540 19737540 C T TMPRSS15 Silent p.L230L 0.27 TCGA-D5-6536-01 21 19737541 19737541 A T TMPRSS15 Nonsense_Mutation p.L230* 0.28 TCGA-D5-6536-01 21 19737542 19737542 A T TMPRSS15 Missense_Mutation p.L230M 0.28 tolerated(0.39) benign(0.393) TCGA-D5-6536-01 21 31852534 31852534 G A KRTAP19-1 Missense_Mutation p.R35W 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-D5-6536-01 2 166179831 166179831 G A SCN2A Missense_Mutation p.V613M 0.34 deleterious(0.01) possibly_damaging(0.822) TCGA-D5-6536-01 2 179517061 179517061 G C TTN Silent p.P13047P 0.22 TCGA-D5-6536-01 2 179517070 179517070 A T TTN Silent p.P13044P 0.14 TCGA-D5-6536-01 2 179517221 179517221 C G TTN Missense_Mutation p.A13031P 0.18 TCGA-D5-6536-01 2 202619370 202619370 G T ALS2 Missense_Mutation p.A499D 0.35 tolerated(0.05) possibly_damaging(0.544) TCGA-D5-6536-01 2 233834949 233834949 T C NGEF Missense_Mutation p.T120A 0.29 tolerated_low_confidence(0.38) benign(0.01) TCGA-D5-6536-01 2 30480326 30480326 C T LBH Missense_Mutation p.R53C 0.44 tolerated(0.07) benign(0.024) TCGA-D5-6536-01 2 39262411 39262412 AA - SOS1 Frame_Shift_Del p.L339Tfs*16 0.27 TCGA-D5-6536-01 2 43452635 43452636 - C ZFP36L2 Frame_Shift_Ins p.E103Gfs*23 0.22 TCGA-D5-6536-01 3 121345820 121345820 A T FBXO40 3'UTR 0.38 TCGA-D5-6536-01 3 123419460 123419460 T G MYLK Missense_Mutation p.D952A 0.13 deleterious(0) benign(0.044) TCGA-D5-6536-01 3 133928666 133928666 C T RYK Silent p.R152R 0.36 TCGA-D5-6536-01 3 1363468 1363468 C T CNTN6 Missense_Mutation p.A299V 0.34 tolerated(0.06) possibly_damaging(0.673) TCGA-D5-6536-01 3 142274762 142274762 G T ATR Missense_Mutation p.F766L 0.41 deleterious(0.04) benign(0.006) TCGA-D5-6536-01 3 142840332 142840332 G A CHST2 Missense_Mutation p.R225H 0.18 tolerated(0.07) probably_damaging(0.997) TCGA-D5-6536-01 3 195022818 195022818 G A ACAP2 Missense_Mutation p.A401V 0.25 tolerated(0.97) benign(0.037) TCGA-D5-6536-01 3 4852973 4852973 G A ITPR1 Missense_Mutation p.E2418K 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6536-01 3 49161922 49161922 C T LAMB2 Missense_Mutation p.R1078H 0.27 tolerated(0.26) benign(0.034) TCGA-D5-6536-01 4 134084141 134084141 T C PCDH10 Missense_Mutation p.L936P 0.32 deleterious(0.01) probably_damaging(0.914) TCGA-D5-6536-01 4 134084149 134084149 A T PCDH10 Missense_Mutation p.N939Y 0.33 deleterious(0.01) possibly_damaging(0.729) TCGA-D5-6536-01 4 145040910 145040910 G T GYPA Missense_Mutation p.A54E 0.39 tolerated(0.3) benign(0.221) TCGA-D5-6536-01 4 44624520 44624520 C A YIPF7 Missense_Mutation p.A252S 0.20 tolerated(1) benign(0) TCGA-D5-6536-01 5 112175541 112175542 - TA APC Frame_Shift_Ins p.S1419* 0.19 TCGA-D5-6536-01 5 139193022 139193022 C T PSD2 Missense_Mutation p.T167M 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6536-01 5 139917026 139917026 A G ANKHD1 Silent p.Q2360Q 0.17 TCGA-D5-6536-01 5 140203440 140203440 G T PCDHA5 Missense_Mutation p.D694Y 0.37 deleterious_low_confidence(0.01) benign(0.282) TCGA-D5-6536-01 5 140517047 140517047 G A PCDHB5 Silent p.P677P 0.37 TCGA-D5-6536-01 5 178139098 178139098 G C ZNF354A Missense_Mutation p.T594S 0.31 deleterious(0.03) benign(0.06) TCGA-D5-6536-01 5 38886211 38886211 G C OSMR Missense_Mutation p.E304Q 0.47 tolerated(0.09) possibly_damaging(0.717) TCGA-D5-6536-01 5 95743967 95743967 G A PCSK1 Missense_Mutation p.P386S 0.29 deleterious(0) probably_damaging(0.993) TCGA-D5-6536-01 6 30918654 30918654 G A DPCR1 Missense_Mutation p.A805T 0.35 tolerated(0.55) benign(0.024) TCGA-D5-6536-01 6 39554174 39554174 T C KIF6 Missense_Mutation p.I285V 0.33 tolerated(0.38) benign(0.047) TCGA-D5-6536-01 6 43323159 43323159 C T ZNF318 Missense_Mutation p.R638Q 0.33 benign(0.044) TCGA-D5-6536-01 6 69703666 69703666 G A BAI3 Missense_Mutation p.E581K 0.28 deleterious(0.01) benign(0.026) TCGA-D5-6536-01 6 74228318 74228318 G - EEF1A1 Frame_Shift_Del p.P263Lfs*27 0.25 TCGA-D5-6536-01 6 97720588 97720588 G A MMS22L Nonsense_Mutation p.Q200* 0.34 TCGA-D5-6536-01 7 130020943 130020943 C T CPA1 Nonsense_Mutation p.Q24* 0.34 TCGA-D5-6536-01 7 133881816 133881816 G A LRGUK Missense_Mutation p.A502T 0.37 deleterious(0.01) probably_damaging(1) TCGA-D5-6536-01 7 21657267 21657267 G A DNAH11 Missense_Mutation p.V1381I 0.21 benign(0.003) TCGA-D5-6536-01 7 31855648 31855648 G A PDE1C Missense_Mutation p.T628M 0.36 tolerated_low_confidence(0.1) benign(0.002) TCGA-D5-6536-01 7 4051785 4051785 C T SDK1 Missense_Mutation p.R780W 0.38 deleterious(0) probably_damaging(1) TCGA-D5-6536-01 7 55479743 55479743 C T LANCL2 Silent p.G323G 0.31 TCGA-D5-6536-01 7 92731251 92731251 T A SAMD9 Missense_Mutation p.N1387I 0.32 deleterious(0) probably_damaging(0.999) TCGA-D5-6536-01 8 12586690 12586690 G C LONRF1 Missense_Mutation p.Q614E 0.43 tolerated(0.28) benign(0.085) TCGA-D5-6536-01 8 20112575 20112575 C T LZTS1 Missense_Mutation p.G40R 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6536-01 8 21769458 21769458 G T DOK2 Missense_Mutation p.S129R 0.40 tolerated(0.13) benign(0.282) TCGA-D5-6536-01 8 41504034 41504034 G T NKX6-3 Silent p.I114I 0.39 TCGA-D5-6536-01 8 52321670 52321670 G A PXDNL Silent p.N838N 0.27 TCGA-D5-6536-01 8 89180149 89180149 C T MMP16 Missense_Mutation p.R153H 0.37 deleterious(0) probably_damaging(0.979) TCGA-D5-6536-01 9 116235 116235 G C CBWD1 3'Flank 0.07 TCGA-D5-6536-01 9 116811288 116811288 A G ZNF618 Missense_Mutation p.Y476C 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6536-01 9 131823541 131823541 C T FAM73B Missense_Mutation p.P309L 0.34 tolerated(0.61) benign(0.021) TCGA-D5-6536-01 9 141069901 141069901 C T TUBBP5 RNA 0.22 TCGA-D5-6536-01 9 34833057 34833067 TCTTCAGCAGG CCT FAM205B RNA 0.32 TCGA-D5-6536-01 9 99296769 99296769 C T CDC14B Missense_Mutation p.C228Y 0.33 deleterious(0.02) possibly_damaging(0.796) TCGA-D5-6536-01 X 134680762 134680762 G T DDX26B Missense_Mutation p.V189L 0.66 tolerated(0.05) possibly_damaging(0.897) TCGA-D5-6536-01 X 153068989 153068989 T C PDZD4 Missense_Mutation p.Q710R 0.75 tolerated(0.15) benign(0.005) TCGA-D5-6536-01 X 153133529 153133529 G A L1CAM Silent p.S584S 0.75 TCGA-D5-6536-01 X 26212560 26212560 G A MAGEB6 Silent p.A199A 0.79 TCGA-D5-6536-01 X 91134049 91134049 G A PCDH11X Missense_Mutation p.R937Q 0.76 tolerated(0.17) benign(0.017) TCGA-D5-6536-01 Y 3447347 3447347 C T TGIF2LY Missense_Mutation p.A21V 0.11 tolerated(0.24) benign(0.007) TCGA-D5-6537-01 10 134012447 134012447 C T DPYSL4 Silent p.A261A 0.36 TCGA-D5-6537-01 10 30336653 30336653 C T KIAA1462 Missense_Mutation p.R30H 0.40 tolerated(0.34) benign(0.021) TCGA-D5-6537-01 10 46967494 46967494 G A SYT15 Missense_Mutation p.R195C 0.17 tolerated(0.06) benign(0.052) TCGA-D5-6537-01 10 47752297 47752297 G T ANXA8L2 Intron 0.29 TCGA-D5-6537-01 10 50340122 50340122 C T FAM170B Missense_Mutation p.E130K 0.45 tolerated(0.2) benign(0.009) TCGA-D5-6537-01 10 50854613 50854613 G A CHAT Missense_Mutation p.A392T 0.58 tolerated(0.15) benign(0.009) TCGA-D5-6537-01 10 72179709 72179709 G C EIF4EBP2 Missense_Mutation p.R62P 0.38 deleterious(0.03) probably_damaging(0.961) TCGA-D5-6537-01 10 74914084 74914084 C T ECD Missense_Mutation p.R238Q 0.33 deleterious(0) probably_damaging(0.988) TCGA-D5-6537-01 10 81273770 81273770 T A EIF5AL1 3'UTR 0.12 TCGA-D5-6537-01 10 87966134 87966134 G A GRID1 Silent p.Y169Y 0.33 TCGA-D5-6537-01 11 105481641 105481641 C T GRIA4 5'UTR 0.33 TCGA-D5-6537-01 11 116692128 116692128 C T APOA4 Missense_Mutation p.V216M 0.14 tolerated(0.11) possibly_damaging(0.733) TCGA-D5-6537-01 11 132812851 132812851 G A OPCML Missense_Mutation p.T46M 0.43 deleterious(0.04) possibly_damaging(0.473) TCGA-D5-6537-01 11 55659109 55659109 C T TRIM51 3'UTR 0.41 TCGA-D5-6537-01 11 62592574 62592574 T C STX5 Missense_Mutation p.R205G 0.12 deleterious(0) benign(0.044) TCGA-D5-6537-01 11 63398692 63398692 A C ATL3 Silent p.A453A 0.44 TCGA-D5-6537-01 12 109017818 109017818 C T SELPLG Missense_Mutation p.R105H 0.31 tolerated(0.24) unknown(0) TCGA-D5-6537-01 12 109972401 109972401 C T UBE3B Silent p.T1007T 0.19 TCGA-D5-6537-01 12 112318312 112318312 C T MAPKAPK5 Missense_Mutation p.T214M 0.31 tolerated(0.11) possibly_damaging(0.877) TCGA-D5-6537-01 12 112600121 112600121 C T HECTD4 3'UTR 0.32 TCGA-D5-6537-01 12 122677295 122677295 G A LRRC43 Missense_Mutation p.V365I 0.53 tolerated(0.4) benign(0.168) TCGA-D5-6537-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.62 deleterious(0.03) benign(0.376) TCGA-D5-6537-01 12 57918089 57918089 G A MBD6 Translation_Start_Site p.M1? 0.62 deleterious_low_confidence(0) unknown(0) TCGA-D5-6537-01 13 113773011 113773011 C T F7 Missense_Mutation p.R364W 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6537-01 13 32745177 32745177 C T FRY Nonsense_Mutation p.R641* 0.23 TCGA-D5-6537-01 13 36788623 36788623 G A SOHLH2 Intron 0.58 TCGA-D5-6537-01 14 20296046 20296046 G A OR4N2 Missense_Mutation p.A147T 0.26 tolerated(0.08) benign(0.046) TCGA-D5-6537-01 14 30068271 30068271 C A PRKD1 Nonsense_Mutation p.E710* 0.05 TCGA-D5-6537-01 15 42211520 42211520 C A EHD4 Missense_Mutation p.R271L 0.45 deleterious(0.01) probably_damaging(0.987) TCGA-D5-6537-01 15 59961165 59961165 T A BNIP2 Missense_Mutation p.R394S 0.43 deleterious(0.03) benign(0.209) TCGA-D5-6537-01 15 89390590 89390590 G A ACAN Missense_Mutation p.A516T 0.37 deleterious(0) unknown(0) TCGA-D5-6537-01 15 92988058 92988058 C T ST8SIA2 Silent p.G247G 0.40 TCGA-D5-6537-01 16 23768586 23768586 C T CHP2 Missense_Mutation p.T160M 0.38 deleterious(0) probably_damaging(0.952) TCGA-D5-6537-01 16 3118215 3118215 C T IL32 Missense_Mutation p.A59V 0.36 tolerated(0.27) benign(0.005) TCGA-D5-6537-01 16 3647433 3647433 C A SLX4 Missense_Mutation p.D544Y 0.39 deleterious(0) benign(0.17) TCGA-D5-6537-01 16 48141284 48141284 G A ABCC12 Silent p.S808S 0.36 TCGA-D5-6537-01 16 57719703 57719703 C T GPR97 Missense_Mutation p.R469W 0.42 deleterious(0) possibly_damaging(0.713) TCGA-D5-6537-01 16 70546297 70546297 C T COG4 Missense_Mutation p.A195T 0.39 deleterious(0) probably_damaging(0.933) TCGA-D5-6537-01 16 75668129 75668129 T C KARS Missense_Mutation p.Y314C 0.34 deleterious(0) probably_damaging(0.949) TCGA-D5-6537-01 16 88792765 88792765 G A PIEZO1 Missense_Mutation p.R1299C 0.40 deleterious(0) probably_damaging(0.999) TCGA-D5-6537-01 16 9892164 9892164 C A GRIN2A Missense_Mutation p.D776Y 0.38 deleterious(0) probably_damaging(0.997) TCGA-D5-6537-01 17 21208416 21208416 C T MAP2K3 Silent p.D250D 0.14 TCGA-D5-6537-01 17 37321998 37321998 C T ARL5C Missense_Mutation p.A6T 0.05 tolerated(0.38) benign(0.02) TCGA-D5-6537-01 17 38711073 38711073 C T CCR7 Missense_Mutation p.R353Q 0.11 tolerated(0.29) benign(0.002) TCGA-D5-6537-01 17 61498351 61498351 G A TANC2 Missense_Mutation p.D1670N 0.41 tolerated_low_confidence(0.09) probably_damaging(0.989) TCGA-D5-6537-01 17 63554209 63554209 T G AXIN2 Missense_Mutation p.E177A 0.45 deleterious(0) probably_damaging(1) TCGA-D5-6537-01 17 68171424 68171424 C T KCNJ2 Missense_Mutation p.R82W 0.41 deleterious(0) probably_damaging(1) TCGA-D5-6537-01 17 78223063 78223063 G A SLC26A11 Missense_Mutation p.A545T 0.12 tolerated(0.62) benign(0.001) TCGA-D5-6537-01 17 80352305 80352305 G A OGFOD3 Missense_Mutation p.P313L 0.51 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-D5-6537-01 18 18531137 18531137 T C ROCK1 3'UTR 0.38 TCGA-D5-6537-01 18 77477932 77477932 C T CTDP1 Missense_Mutation p.T778M 0.40 deleterious(0) probably_damaging(1) TCGA-D5-6537-01 18 8069777 8069777 G A PTPRM Missense_Mutation p.R409H 0.40 deleterious(0) possibly_damaging(0.705) TCGA-D5-6537-01 19 14748918 14748918 G A EMR3 Nonsense_Mutation p.R495* 0.36 TCGA-D5-6537-01 19 19745506 19745506 C T GMIP Missense_Mutation p.E632K 0.41 deleterious(0.05) benign(0.249) TCGA-D5-6537-01 19 21606483 21606483 T C ZNF493 Missense_Mutation p.I341T 0.38 tolerated(0.21) unknown(0) TCGA-D5-6537-01 19 36279205 36279205 C T ARHGAP33 Silent p.G1085G 0.22 TCGA-D5-6537-01 19 39023322 39023322 G A RYR1 Silent p.L3735L 0.24 TCGA-D5-6537-01 19 41096749 41096749 T A SHKBP1 Missense_Mutation p.S628T 0.23 tolerated_low_confidence(0.1) benign(0.004) TCGA-D5-6537-01 19 48626224 48626224 G A LIG1 Silent p.Y733Y 0.15 TCGA-D5-6537-01 19 49318342 49318342 C T HSD17B14 Silent p.L142L 0.28 TCGA-D5-6537-01 19 56223313 56223313 C T NLRP9 Missense_Mutation p.R899H 0.23 tolerated(0.2) benign(0.001) TCGA-D5-6537-01 19 56466359 56466359 G T NLRP8 Missense_Mutation p.G312V 0.23 tolerated(0.18) possibly_damaging(0.682) TCGA-D5-6537-01 19 57327380 57327380 G A PEG3 Silent p.F810F 0.22 TCGA-D5-6537-01 19 6534763 6534763 C T TNFSF9 Missense_Mutation p.R151C 0.45 deleterious(0) probably_damaging(1) TCGA-D5-6537-01 19 7592429 7592429 G A MCOLN1 Missense_Mutation p.E199K 0.15 tolerated(0.44) benign(0.029) TCGA-D5-6537-01 19 9085582 9085582 G T MUC16 Missense_Mutation p.S2078Y 0.40 unknown(0) TCGA-D5-6537-01 19 9089704 9089704 C A MUC16 Missense_Mutation p.R704I 0.43 unknown(0) TCGA-D5-6537-01 1 11008864 11008864 G T C1orf127 Missense_Mutation p.A443E 0.43 tolerated(0.5) benign(0.198) TCGA-D5-6537-01 1 117659339 117659339 C T TRIM45 Silent p.T417T 0.39 TCGA-D5-6537-01 1 1178022 1178022 C A FAM132A Missense_Mutation p.G272V 0.34 deleterious(0) probably_damaging(1) TCGA-D5-6537-01 1 152278815 152278815 G A FLG Silent p.D2849D 0.14 TCGA-D5-6537-01 1 154302930 154302930 G A ATP8B2 Silent p.A63A 0.37 TCGA-D5-6537-01 1 196311344 196311344 G A KCNT2 Missense_Mutation p.S473L 0.29 deleterious(0.04) possibly_damaging(0.733) TCGA-D5-6537-01 1 206821133 206821133 A G DYRK3 Missense_Mutation p.Y197C 0.40 deleterious(0) probably_damaging(0.998) TCGA-D5-6537-01 1 228465536 228465536 C T OBSCN Missense_Mutation p.S2708L 0.39 probably_damaging(0.999) TCGA-D5-6537-01 1 228486288 228486288 G T OBSCN Silent p.G4360G 0.10 TCGA-D5-6537-01 1 235357466 235357466 G T ARID4B Silent p.R663R 0.34 TCGA-D5-6537-01 1 34554690 34554690 C T CSMD2 Missense_Mutation p.A58T 0.35 tolerated(0.28) benign(0.066) TCGA-D5-6537-01 1 39880537 39880537 C T KIAA0754 3'UTR 0.37 TCGA-D5-6537-01 1 46978063 46978063 C A DMBX1 Missense_Mutation p.P344H 0.34 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-D5-6537-01 20 61143582 61143582 C T C20orf166 5'Flank 0.59 TCGA-D5-6537-01 21 41711182 41711182 C A DSCAM Missense_Mutation p.Q457H 0.44 tolerated(0.13) benign(0.049) TCGA-D5-6537-01 22 33670324 33670324 G T LARGE 3'UTR 0.55 TCGA-D5-6537-01 22 41252524 41252524 G A ST13 Silent p.N7N 0.32 TCGA-D5-6537-01 22 43926712 43926712 C T EFCAB6 Missense_Mutation p.V1456I 0.43 tolerated(0.17) benign(0.438) TCGA-D5-6537-01 22 50470538 50470538 G A TTLL8 Silent p.S444S 0.41 TCGA-D5-6537-01 22 50596499 50596499 G A MOV10L1 Missense_Mutation p.R1027Q 0.51 deleterious(0.03) possibly_damaging(0.746) TCGA-D5-6537-01 2 128088048 128088048 C A MAP3K2 Missense_Mutation p.D100Y 0.27 deleterious(0) possibly_damaging(0.904) TCGA-D5-6537-01 2 12863463 12863463 C A TRIB2 Silent p.I116I 0.28 TCGA-D5-6537-01 2 175618405 175618405 G A CHRNA1 Missense_Mutation p.R227W 0.34 deleterious(0.02) probably_damaging(0.932) TCGA-D5-6537-01 2 192256873 192256873 C T MYO1B Silent p.P674P 0.27 TCGA-D5-6537-01 2 198638873 198638873 A G AC011997.1 3'UTR 0.21 TCGA-D5-6537-01 2 204103843 204103843 C G CYP20A1 Missense_Mutation p.L20V 0.26 tolerated(0.11) benign(0.403) TCGA-D5-6537-01 2 222298897 222298897 C T EPHA4 Missense_Mutation p.G821R 0.54 deleterious(0) probably_damaging(0.999) TCGA-D5-6537-01 2 228169766 228169766 G T COL4A3 Nonsense_Mutation p.E1407* 0.58 TCGA-D5-6537-01 2 234675783 234675783 C A UGT1A10 Missense_Mutation p.A320D 0.56 deleterious(0.01) probably_damaging(1) TCGA-D5-6537-01 2 27281306 27281306 G A AGBL5 Silent p.A570A 0.27 TCGA-D5-6537-01 2 47135016 47135016 T A MCFD2 Missense_Mutation p.D81V 0.51 deleterious(0) probably_damaging(0.994) TCGA-D5-6537-01 2 5837992 5837992 C T SOX11 3'UTR 0.55 TCGA-D5-6537-01 2 95815569 95815569 G A ZNF514 Missense_Mutation p.R221C 0.52 deleterious(0) probably_damaging(0.94) TCGA-D5-6537-01 3 112724420 112724420 T C C3orf17 Missense_Mutation p.D556G 0.09 tolerated(0.06) probably_damaging(0.993) TCGA-D5-6537-01 3 178928071 178928082 ATGGATTAGAAG - PIK3CA In_Frame_Del p.G451_D454del 0.69 TCGA-D5-6537-01 3 183884250 183884250 T C DVL3 Missense_Mutation p.F307S 0.46 deleterious(0) probably_damaging(0.996) TCGA-D5-6537-01 4 141545364 141545364 G T TBC1D9 Missense_Mutation p.A995E 0.39 tolerated(0.77) benign(0.01) TCGA-D5-6537-01 4 156289742 156289742 G A MAP9 Missense_Mutation p.P235L 0.34 tolerated(0.31) benign(0.003) TCGA-D5-6537-01 4 23830116 23830116 G T PPARGC1A Missense_Mutation p.H222N 0.32 deleterious(0.03) benign(0.225) TCGA-D5-6537-01 4 30725209 30725209 G T PCDH7 Missense_Mutation p.R722I 0.37 deleterious(0) possibly_damaging(0.614) TCGA-D5-6537-01 4 47877265 47877265 G A NFXL1 Missense_Mutation p.R709W 0.39 deleterious(0) probably_damaging(0.98) TCGA-D5-6537-01 4 48546803 48546803 A G FRYL Missense_Mutation p.S1800P 0.31 tolerated(0.5) benign(0.26) TCGA-D5-6537-01 4 57889917 57889928 GGTAGGTATCTT TCTATACAAGTATAGACACTATCAGTATAGACA POLR2B Splice_Site p.X952_splice 0.18 TCGA-D5-6537-01 5 112170777 112170780 CAGA - APC Frame_Shift_Del p.N627Lfs*2 0.41 TCGA-D5-6537-01 5 139231308 139231308 T C NRG2 Silent p.A551A 0.39 TCGA-D5-6537-01 5 140215306 140215306 C T PCDHA7 Silent p.A446A 0.36 TCGA-D5-6537-01 5 140347088 140347088 G A PCDHAC2 Missense_Mutation p.R246H 0.38 tolerated(0.25) possibly_damaging(0.87) TCGA-D5-6537-01 5 140481787 140481787 G A PCDHB3 Silent p.S518S 0.46 TCGA-D5-6537-01 5 177171969 177171969 C G FAM153A Splice_Site p.X10_splice 0.13 TCGA-D5-6537-01 5 45262788 45262788 G A HCN1 Silent p.I636I 0.44 TCGA-D5-6537-01 5 99897876 99897876 G T FAM174A Missense_Mutation p.A185S 0.38 deleterious(0.02) possibly_damaging(0.752) TCGA-D5-6537-01 6 10961756 10961756 T C SYCP2L Silent p.A793A 0.38 TCGA-D5-6537-01 7 103019695 103019695 G A SLC26A5 Nonsense_Mutation p.R558* 0.25 TCGA-D5-6537-01 7 127224420 127224420 C T GCC1 Missense_Mutation p.E273K 0.31 tolerated(0.52) possibly_damaging(0.495) TCGA-D5-6537-01 7 134819777 134819777 C A AGBL3 Missense_Mutation p.Q843K 0.24 tolerated_low_confidence(0.83) benign(0.009) TCGA-D5-6537-01 7 41729376 41729376 C A INHBA Missense_Mutation p.A385S 0.31 tolerated(0.71) benign(0.007) TCGA-D5-6537-01 7 44806254 44806254 G T ZMIZ2 Missense_Mutation p.A883S 0.25 tolerated(1) benign(0.004) TCGA-D5-6537-01 7 99703100 99703100 C A AP4M1 Missense_Mutation p.D289E 0.31 tolerated(0.54) benign(0.006) TCGA-D5-6537-01 8 126445777 126445777 C T TRIB1 Silent p.V193V 0.42 TCGA-D5-6537-01 8 131066893 131066893 G A ASAP1 3'UTR 0.31 TCGA-D5-6537-01 8 145626942 145626942 C T CPSF1 Missense_Mutation p.R63Q 0.26 deleterious(0.01) benign(0.011) TCGA-D5-6537-01 8 17915036 17915036 C T ASAH1 3'UTR 0.66 TCGA-D5-6537-01 8 21965840 21965840 G T NUDT18 Silent p.I60I 0.30 TCGA-D5-6537-01 8 2855574 2855574 C T CSMD1 Missense_Mutation p.R2779Q 0.51 probably_damaging(0.999) TCGA-D5-6537-01 8 59522180 59522180 G T NSMAF Missense_Mutation p.P255T 0.27 deleterious(0) probably_damaging(1) TCGA-D5-6537-01 8 68864693 68864693 C T PREX2 Missense_Mutation p.R22C 0.35 deleterious(0) probably_damaging(0.99) TCGA-D5-6537-01 8 99019456 99019456 G A MATN2 Splice_Site p.X484_splice 0.48 TCGA-D5-6537-01 9 116931715 116931715 C T COL27A1 Missense_Mutation p.P627L 0.46 unknown(0) TCGA-D5-6537-01 9 119976958 119976958 G A ASTN2 Missense_Mutation p.R232C 0.46 deleterious_low_confidence(0) unknown(0) TCGA-D5-6537-01 9 135959919 135959919 C T CELP RNA 0.31 TCGA-D5-6537-01 9 136402606 136402606 C T ADAMTSL2 Missense_Mutation p.T57M 0.43 deleterious(0) probably_damaging(0.996) TCGA-D5-6537-01 9 2652940 2652940 G A VLDLR Silent p.T859T 0.35 TCGA-D5-6537-01 9 33912043 33912043 C A UBE2R2 Missense_Mutation p.F148L 0.30 tolerated(0.1) possibly_damaging(0.611) TCGA-D5-6537-01 9 37426543 37426543 G A GRHPR Missense_Mutation p.R99Q 0.33 tolerated(0.12) benign(0.087) TCGA-D5-6537-01 9 91266871 91266876 CTCACC - RP13-60M5.2 Splice_Site 0.25 TCGA-D5-6537-01 X 107846220 107846220 G T COL4A5 Nonsense_Mutation p.G725* 0.40 TCGA-D5-6537-01 X 118221612 118221612 T C KIAA1210 Missense_Mutation p.Q1194R 0.93 tolerated(0.2) possibly_damaging(0.723) TCGA-D5-6537-01 X 120181962 120181962 C A GLUD2 Missense_Mutation p.H142N 0.88 deleterious(0.05) possibly_damaging(0.582) TCGA-D5-6537-01 X 15706969 15706969 A G CA5BP1 RNA 0.10 TCGA-D5-6537-01 X 2138915 2138915 G A DHRSX 3'UTR 0.10 TCGA-D5-6538-01 10 105761321 105761321 A T SLK Missense_Mutation p.E328D 0.30 tolerated(0.24) benign(0.101) TCGA-D5-6538-01 10 11363279 11363279 C T CELF2 Silent p.A408A 0.32 TCGA-D5-6538-01 10 132965134 132965134 G A TCERG1L Missense_Mutation p.R291W 0.34 deleterious(0.01) possibly_damaging(0.719) TCGA-D5-6538-01 10 133967292 133967292 G A JAKMIP3 Silent p.A699A 0.25 TCGA-D5-6538-01 10 133976787 133976787 G A JAKMIP3 Silent p.L763L 0.47 TCGA-D5-6538-01 10 95790955 95790955 C T PLCE1 Missense_Mutation p.S51F 0.31 deleterious_low_confidence(0.02) benign(0.11) TCGA-D5-6538-01 11 108064717 108064717 T A NPAT Missense_Mutation p.I62F 0.56 deleterious(0) probably_damaging(0.975) TCGA-D5-6538-01 11 120833254 120833254 C T GRIK4 Silent p.I710I 0.59 TCGA-D5-6538-01 11 290994 290994 C G ATHL1 Missense_Mutation p.L263V 0.19 deleterious(0.03) benign(0.35) TCGA-D5-6538-01 11 3114853 3114853 C T OSBPL5 Missense_Mutation p.S617N 0.54 tolerated(0.29) benign(0.094) TCGA-D5-6538-01 11 35308425 35308425 C T SLC1A2 Missense_Mutation p.V389I 0.60 deleterious(0.02) possibly_damaging(0.864) TCGA-D5-6538-01 11 47808107 47808107 C T NUP160 Splice_Site p.X1249_splice 0.60 TCGA-D5-6538-01 11 58919953 58919953 G A FAM111A Missense_Mutation p.R271K 0.65 tolerated(0.97) benign(0.004) TCGA-D5-6538-01 11 60274542 60274542 C T MS4A12 Missense_Mutation p.A250V 0.18 tolerated(0.24) benign(0.008) TCGA-D5-6538-01 11 76905558 76905558 G A MYO7A Missense_Mutation p.A1438T 0.21 tolerated(0.07) benign(0.044) TCGA-D5-6538-01 12 103288631 103288631 T A PAH Missense_Mutation p.E78D 0.63 tolerated(0.37) benign(0.125) TCGA-D5-6538-01 12 108917187 108917187 G A SART3 3'UTR 0.64 TCGA-D5-6538-01 12 109286790 109286790 G A DAO Missense_Mutation p.R162Q 0.62 tolerated(0.08) benign(0.125) TCGA-D5-6538-01 12 112888210 112888210 G A PTPN11 Missense_Mutation p.E76K 0.54 deleterious(0.01) probably_damaging(0.978) TCGA-D5-6538-01 12 116424203 116424203 C T MED13L Silent p.P1402P 0.65 TCGA-D5-6538-01 12 124957677 124957677 C A NCOR2 Missense_Mutation p.D138Y 0.69 unknown(0) TCGA-D5-6538-01 12 12630318 12630318 G A DUSP16 Nonsense_Mutation p.R483* 0.68 TCGA-D5-6538-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.69 deleterious(0) possibly_damaging(0.479) TCGA-D5-6538-01 12 3692262 3692262 G A PRMT8 Silent p.S289S 0.70 TCGA-D5-6538-01 12 42853977 42853977 C A PRICKLE1 Missense_Mutation p.E710D 0.61 tolerated(1) benign(0.001) TCGA-D5-6538-01 12 49415429 49415429 T C KMT2D 3'UTR 0.18 TCGA-D5-6538-01 12 52501254 52501254 C T AC078864.1 3'Flank 0.35 TCGA-D5-6538-01 12 53494599 53494599 G A IGFBP6 Silent p.T146T 0.22 TCGA-D5-6538-01 12 70824352 70824352 C T KCNMB4 Silent p.G184G 0.62 TCGA-D5-6538-01 12 80862515 80862515 G A PTPRQ Missense_Mutation p.V309I 0.33 tolerated(0.53) benign(0.005) TCGA-D5-6538-01 13 113917954 113917954 G C CUL4A 3'Flank 0.64 TCGA-D5-6538-01 13 30097438 30097438 T C SLC7A1 Silent p.A338A 0.24 TCGA-D5-6538-01 13 37016917 37016918 - A CCNA1 3'UTR 0.18 TCGA-D5-6538-01 13 67802512 67802512 C T PCDH9 Missense_Mutation p.A21T 0.12 tolerated(0.1) benign(0.004) TCGA-D5-6538-01 14 103433472 103433472 A G CDC42BPB Silent p.N794N 0.45 TCGA-D5-6538-01 14 19553641 19553641 C T POTEG Silent p.S75S 0.17 TCGA-D5-6538-01 14 29238035 29238036 - T FOXG1 3'UTR 0.30 TCGA-D5-6538-01 14 30396495 30396495 G A PRKD1 Missense_Mutation p.A75V 0.55 tolerated(0.16) benign(0.008) TCGA-D5-6538-01 14 38725219 38725219 C T CLEC14A Silent p.P3P 0.46 TCGA-D5-6538-01 14 51444036 51444036 G A TRIM9 Silent p.F702F 0.44 TCGA-D5-6538-01 14 59835473 59835473 G C DAAM1 Missense_Mutation p.V1045L 0.55 tolerated(0.07) possibly_damaging(0.841) TCGA-D5-6538-01 14 94733333 94733333 G A PPP4R4 Missense_Mutation p.G806R 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-D5-6538-01 15 101454679 101454679 G A ALDH1A3 Intron 0.72 TCGA-D5-6538-01 15 23299779 23299779 C T HERC2P2 RNA 0.85 TCGA-D5-6538-01 15 30065521 30065521 G A TJP1 Nonsense_Mutation p.R42* 0.92 TCGA-D5-6538-01 15 42742965 42742965 T A ZNF106 Missense_Mutation p.N479I 0.45 tolerated(0.31) benign(0.235) TCGA-D5-6538-01 15 43577091 43577091 C T TGM7 Missense_Mutation p.V309M 0.44 tolerated(0.12) benign(0.034) TCGA-D5-6538-01 15 48541805 48541805 A T SLC12A1 Missense_Mutation p.N573I 0.47 deleterious(0) probably_damaging(1) TCGA-D5-6538-01 15 50935715 50935715 G A TRPM7 Silent p.V119V 0.24 TCGA-D5-6538-01 15 79092796 79092796 C T ADAMTS7 Missense_Mutation p.R65H 0.97 tolerated(0.19) benign(0.22) TCGA-D5-6538-01 15 81625445 81625445 G A TMC3 Missense_Mutation p.S873L 0.86 tolerated_low_confidence(0.13) benign(0.158) TCGA-D5-6538-01 15 92459286 92459286 G A SLCO3A1 Missense_Mutation p.A82T 0.30 deleterious(0.01) probably_damaging(0.979) TCGA-D5-6538-01 16 23388543 23388543 T C SCNN1B Missense_Mutation p.M443T 0.51 tolerated(0.41) benign(0.007) TCGA-D5-6538-01 16 69727488 69727488 C A NFAT5 Missense_Mutation p.H1254N 0.17 benign(0.069) TCGA-D5-6538-01 16 70841445 70841445 G T HYDIN 3'UTR 0.41 TCGA-D5-6538-01 16 84806210 84806210 C T USP10 Nonsense_Mutation p.R688* 0.39 TCGA-D5-6538-01 17 33343448 33343448 C T RFFL Nonsense_Mutation p.W276* 0.48 TCGA-D5-6538-01 17 33802296 33802296 A C SLFN12L Silent p.P471P 0.21 TCGA-D5-6538-01 17 3480944 3480944 T C SHPK Missense_Mutation p.Y554C 0.85 deleterious(0) probably_damaging(0.977) TCGA-D5-6538-01 17 41008477 41008477 C T AOC3 Silent p.C734C 0.52 TCGA-D5-6538-01 17 42399830 42399830 C T SLC25A39 Missense_Mutation p.C94Y 0.51 tolerated(0.05) benign(0.425) TCGA-D5-6538-01 17 44249456 44249456 G A KANSL1 Silent p.I18I 0.32 TCGA-D5-6538-01 17 45897636 45897636 G T OSBPL7 Missense_Mutation p.F3L 0.34 tolerated_low_confidence(0.05) benign(0.002) TCGA-D5-6538-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.87 deleterious(0) probably_damaging(1) TCGA-D5-6538-01 18 50929167 50929167 G T DCC Missense_Mutation p.A947S 0.45 tolerated(0.3) benign(0.436) TCGA-D5-6538-01 18 77798511 77798511 C T RBFA Silent p.L129L 0.39 TCGA-D5-6538-01 19 11918289 11918290 GA - ZNF491 3'UTR 0.25 TCGA-D5-6538-01 19 13080705 13080705 G T DAND5 Silent p.L77L 0.50 TCGA-D5-6538-01 19 14876499 14876499 G A EMR2 Missense_Mutation p.P251L 0.44 tolerated(0.81) benign(0.001) TCGA-D5-6538-01 19 18232540 18232540 C T MAST3 Silent p.S39S 0.37 TCGA-D5-6538-01 19 21719080 21719080 A T ZNF429 Splice_Site p.X76_splice 0.06 TCGA-D5-6538-01 19 2223311 2223311 C T DOT1L Missense_Mutation p.T1141I 0.93 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D5-6538-01 19 3905637 3905637 C T ATCAY Silent p.N114N 0.32 TCGA-D5-6538-01 19 39214657 39214657 G A ACTN4 Missense_Mutation p.M544I 0.06 tolerated(0.17) possibly_damaging(0.851) TCGA-D5-6538-01 19 44661285 44661285 C T ZNF234 Silent p.Y372Y 0.22 TCGA-D5-6538-01 19 45992163 45992163 C T RTN2 Silent p.S441S 0.33 TCGA-D5-6538-01 19 46116896 46116896 A G EML2 Missense_Mutation p.I777T 0.31 deleterious(0) probably_damaging(0.948) TCGA-D5-6538-01 19 50100890 50100890 G A PRR12 Missense_Mutation p.E1100K 0.84 probably_damaging(0.98) TCGA-D5-6538-01 19 58131906 58131906 A T ZNF134 Missense_Mutation p.N140I 0.95 deleterious(0) benign(0.125) TCGA-D5-6538-01 1 158592846 158592846 C T SPTA1 Missense_Mutation p.R2016H 0.65 tolerated(0.05) benign(0.069) TCGA-D5-6538-01 1 175372574 175372574 G A TNR Silent p.S226S 0.70 TCGA-D5-6538-01 1 19181469 19181469 G A TAS1R2 Silent p.S165S 0.32 TCGA-D5-6538-01 1 202850236 202850236 C T RABIF Missense_Mutation p.G81D 0.69 deleterious(0) probably_damaging(0.999) TCGA-D5-6538-01 1 216373076 216373076 G T USH2A Missense_Mutation p.T1235K 0.34 benign(0.104) TCGA-D5-6538-01 1 220835518 220835518 A C MARK1 3'UTR 0.58 TCGA-D5-6538-01 1 65099754 65099754 G A CACHD1 Missense_Mutation p.V222I 0.32 tolerated(0.62) benign(0.011) TCGA-D5-6538-01 1 65113520 65113520 G A CACHD1 Missense_Mutation p.R347K 0.61 tolerated(0.29) benign(0.028) TCGA-D5-6538-01 1 68904934 68904934 A C RPE65 Silent p.S266S 0.62 TCGA-D5-6538-01 1 7724293 7724293 G A CAMTA1 Silent p.L562L 0.35 TCGA-D5-6538-01 1 89847360 89847360 G A GBP6 Missense_Mutation p.V327M 0.60 tolerated(0.09) possibly_damaging(0.501) TCGA-D5-6538-01 1 99767376 99767376 C T LPPR4 Missense_Mutation p.R297W 0.32 deleterious(0) probably_damaging(0.998) TCGA-D5-6538-01 20 61541353 61541353 G A DIDO1 Missense_Mutation p.R287C 0.72 probably_damaging(0.999) TCGA-D5-6538-01 20 62161440 62161440 G A PTK6 Missense_Mutation p.P387S 0.42 deleterious(0) probably_damaging(1) TCGA-D5-6538-01 21 31538298 31538298 G A CLDN17 Missense_Mutation p.T213M 0.57 tolerated(0.11) benign(0) TCGA-D5-6538-01 21 32526579 32526579 G A TIAM1 Missense_Mutation p.R1053C 0.65 deleterious(0.01) probably_damaging(0.976) TCGA-D5-6538-01 21 33065709 33065709 G A SCAF4 Nonsense_Mutation p.R471* 0.24 TCGA-D5-6538-01 21 42824695 42824695 G A MX1 Missense_Mutation p.E553K 0.59 tolerated(0.48) benign(0.2) TCGA-D5-6538-01 22 26239776 26239776 C T MYO18B Missense_Mutation p.R1095W 0.94 deleterious(0) probably_damaging(0.998) TCGA-D5-6538-01 22 44392385 44392385 G A SAMM50 3'UTR 0.76 TCGA-D5-6538-01 2 122485085 122485085 T C NIFK 3'UTR 0.73 TCGA-D5-6538-01 2 135206337 135206337 C T MGAT5 Silent p.G715G 0.23 TCGA-D5-6538-01 2 173341159 173341159 A G ITGA6 Missense_Mutation p.I436V 0.47 tolerated(0.07) benign(0.007) TCGA-D5-6538-01 2 177033965 177033965 C T HOXD3 Silent p.Y41Y 0.18 TCGA-D5-6538-01 2 183032845 183032845 G A PDE1A Intron 0.67 TCGA-D5-6538-01 2 198950262 198950262 C T PLCL1 Missense_Mutation p.P674L 0.27 deleterious(0) probably_damaging(0.991) TCGA-D5-6538-01 2 207169562 207169562 G A ZDBF2 Missense_Mutation p.E104K 0.23 tolerated(0.91) benign(0.305) TCGA-D5-6538-01 2 237032580 237032580 G A AGAP1 Silent p.T796T 0.75 TCGA-D5-6538-01 2 238628178 238628178 C T LRRFIP1 Missense_Mutation p.R56C 0.67 deleterious(0) probably_damaging(0.956) TCGA-D5-6538-01 2 25536862 25536862 C T DNMT3A 5'UTR 0.32 TCGA-D5-6538-01 2 74783059 74783059 G A DOK1 Missense_Mutation p.A165T 0.18 tolerated(0.07) benign(0.227) TCGA-D5-6538-01 2 88056529 88056529 G A PLGLB2 3'UTR 0.28 TCGA-D5-6538-01 3 145878797 145878797 G A PLOD2 5'UTR 0.72 TCGA-D5-6538-01 3 15057687 15057687 G A NR2C2 Missense_Mutation p.R120H 0.67 deleterious_low_confidence(0.04) benign(0.381) TCGA-D5-6538-01 3 155838426 155838426 C T KCNAB1 Missense_Mutation p.A9V 0.29 tolerated_low_confidence(0.78) benign(0) TCGA-D5-6538-01 3 190326914 190326914 C T IL1RAP Missense_Mutation p.P161S 0.66 deleterious(0) probably_damaging(1) TCGA-D5-6538-01 3 192125814 192125814 C A FGF12 Nonsense_Mutation p.E67* 0.22 TCGA-D5-6538-01 3 19940322 19940322 C A EFHB Missense_Mutation p.M506I 0.30 deleterious(0.02) benign(0.027) TCGA-D5-6538-01 3 32995389 32995389 T A CCR4 Missense_Mutation p.L159M 0.34 tolerated(0.07) possibly_damaging(0.819) TCGA-D5-6538-01 3 43344665 43344665 G A SNRK 5'UTR 0.56 TCGA-D5-6538-01 3 48607578 48607578 G A COL7A1 Nonsense_Mutation p.R2492* 0.51 TCGA-D5-6538-01 3 63823692 63823693 - T THOC7 Frame_Shift_Ins p.Q105Afs*16 0.20 TCGA-D5-6538-01 3 9743666 9743666 G C MTMR14 3'UTR 0.28 TCGA-D5-6538-01 4 100738067 100738067 G A DAPP1 5'UTR 0.28 TCGA-D5-6538-01 4 134073122 134073122 C T PCDH10 Silent p.D609D 0.62 TCGA-D5-6538-01 4 148463716 148463716 C T EDNRA Silent p.H410H 0.55 TCGA-D5-6538-01 4 156294388 156294388 T G MAP9 Missense_Mutation p.K127N 0.30 tolerated(1) benign(0.001) TCGA-D5-6538-01 4 186548140 186548140 C A SORBS2 Silent p.R356R 0.61 TCGA-D5-6538-01 4 27019389 27019389 C T STIM2 Missense_Mutation p.R524C 0.31 deleterious(0) possibly_damaging(0.847) TCGA-D5-6538-01 4 40122829 40122829 T C N4BP2 Missense_Mutation p.I1033T 0.55 deleterious(0) possibly_damaging(0.859) TCGA-D5-6538-01 4 43032534 43032534 C T GRXCR1 Missense_Mutation p.R284C 0.35 deleterious(0) possibly_damaging(0.792) TCGA-D5-6538-01 4 54966597 54966597 C T GSX2 Missense_Mutation p.P29L 0.34 deleterious(0.02) benign(0.225) TCGA-D5-6538-01 4 70455045 70455045 A G UGT2A1 3'UTR 0.46 TCGA-D5-6538-01 4 99850300 99850300 G A EIF4E 5'Flank 0.66 TCGA-D5-6538-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.53 TCGA-D5-6538-01 5 112175572 112175573 - GG APC Frame_Shift_Ins p.Q1429Dfs*45 0.29 TCGA-D5-6538-01 5 140182637 140182637 C T PCDHA3 Missense_Mutation p.R619C 0.37 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-D5-6538-01 5 151208543 151208543 T C GLRA1 Missense_Mutation p.N333S 0.31 deleterious(0.05) possibly_damaging(0.751) TCGA-D5-6538-01 5 167617464 167617464 G A TENM2 Missense_Mutation p.A898T 0.31 tolerated(0.54) benign(0.001) TCGA-D5-6538-01 5 177163598 177163598 G T FAM153A Missense_Mutation p.P139T 0.37 tolerated_low_confidence(0.13) benign(0.192) TCGA-D5-6538-01 5 179564645 179564645 C T RASGEF1C Missense_Mutation p.R82Q 0.30 tolerated(0.31) benign(0.094) TCGA-D5-6538-01 5 23522876 23522876 A G PRDM9 Missense_Mutation p.Q255R 0.25 deleterious(0.01) benign(0.009) TCGA-D5-6538-01 5 33937402 33937402 C T RXFP3 Missense_Mutation p.S186L 0.32 tolerated(0.11) benign(0.035) TCGA-D5-6538-01 5 71493386 71493386 C T MAP1B Missense_Mutation p.P1402S 0.62 probably_damaging(0.998) TCGA-D5-6538-01 6 159653361 159653361 C T FNDC1 Missense_Mutation p.T606M 0.74 deleterious_low_confidence(0) unknown(0) TCGA-D5-6538-01 6 31753033 31753033 G C VARS Missense_Mutation p.T446S 0.16 deleterious(0.03) probably_damaging(0.951) TCGA-D5-6538-01 6 31778008 31778008 G A HSPA1L Missense_Mutation p.S581L 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.544) TCGA-D5-6538-01 6 32017322 32017322 G A TNXB 5'Flank 0.77 TCGA-D5-6538-01 6 32036421 32036421 C T TNXB Missense_Mutation p.R1989H 0.23 benign(0.009) TCGA-D5-6538-01 6 35479525 35479525 C T TULP1 Silent p.A83A 0.32 TCGA-D5-6538-01 6 42214281 42214281 A G TRERF1 Silent p.G886G 0.70 TCGA-D5-6538-01 6 99353510 99353510 C T FBXL4 Missense_Mutation p.D299N 0.66 tolerated(0.09) benign(0.093) TCGA-D5-6538-01 7 100363075 100363075 C T ZAN Silent p.C1456C 0.15 TCGA-D5-6538-01 7 100478909 100478909 G C SRRT Missense_Mutation p.E42D 0.42 tolerated(0.35) unknown(0) TCGA-D5-6538-01 7 100853373 100853373 C T PLOD3 Splice_Site p.X561_splice 0.34 TCGA-D5-6538-01 7 120373093 120373093 C T KCND2 Nonsense_Mutation p.R418* 0.52 TCGA-D5-6538-01 7 2565170 2565170 A C LFNG Missense_Mutation p.Q235P 0.47 deleterious(0.01) benign(0.105) TCGA-D5-6538-01 7 2644557 2644557 C T IQCE Missense_Mutation p.R559W 0.57 deleterious(0) probably_damaging(0.98) TCGA-D5-6538-01 7 38457447 38457447 T C AMPH Missense_Mutation p.E459G 0.19 tolerated(0.15) benign(0.037) TCGA-D5-6538-01 7 73085505 73085505 G A VPS37D Silent p.S185S 0.10 TCGA-D5-6538-01 8 10469530 10469530 C T RP1L1 Missense_Mutation p.R693Q 0.62 benign(0.017) TCGA-D5-6538-01 8 104948883 104948883 G A RIMS2 Missense_Mutation p.R827Q 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D5-6538-01 8 116599312 116599312 G A TRPS1 Silent p.G872G 0.41 TCGA-D5-6538-01 8 133980071 133980071 G A TG Missense_Mutation p.A1907T 0.13 tolerated(0.08) benign(0.118) TCGA-D5-6538-01 8 24212067 24212067 G A ADAM28 3'UTR 0.30 TCGA-D5-6538-01 8 27779575 27779575 C T SCARA5 Silent p.A143A 0.17 TCGA-D5-6538-01 8 41551506 41551506 G A ANK1 Missense_Mutation p.R1189W 0.37 deleterious(0.01) probably_damaging(0.977) TCGA-D5-6538-01 8 67405820 67405820 C T C8orf46 5'UTR 0.14 TCGA-D5-6538-01 9 135962433 135962433 G A CELP RNA 0.35 TCGA-D5-6538-01 9 137013408 137013408 A G WDR5 Splice_Site p.X177_splice 0.33 TCGA-D5-6538-01 9 27949585 27949585 C T LINGO2 Missense_Mutation p.R362H 0.53 deleterious(0) probably_damaging(0.997) TCGA-D5-6538-01 9 84532440 84532440 A G SPATA31D5P RNA 0.14 TCGA-D5-6538-01 9 87359904 87359904 G A NTRK2 Silent p.A404A 0.25 TCGA-D5-6538-01 X 10176264 10176264 C T CLCN4 Silent p.F341F 0.36 TCGA-D5-6538-01 X 103216908 103216908 C T TMSB15B 5'Flank 0.21 TCGA-D5-6538-01 X 115577962 115577962 G A SLC6A14 Missense_Mutation p.R282Q 0.34 deleterious(0) probably_damaging(1) TCGA-D5-6538-01 X 134125470 134125470 C T SMIM10 3'UTR 0.33 TCGA-D5-6538-01 X 140994977 140994977 C T MAGEC1 Missense_Mutation p.P596L 0.35 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D5-6538-01 X 148037201 148037201 G T AFF2 Missense_Mutation p.K542N 0.31 deleterious(0) probably_damaging(0.998) TCGA-D5-6538-01 X 153583341 153583341 G A FLNA Missense_Mutation p.T1690M 0.35 tolerated(0.06) probably_damaging(0.946) TCGA-D5-6538-01 X 19954005 19954005 C T CXorf23 Silent p.T595T 0.24 TCGA-D5-6538-01 X 209742 209742 A C PLCXD1 Missense_Mutation p.Q197P 0.64 deleterious(0) probably_damaging(0.989) TCGA-D5-6538-01 X 40510833 40510833 T G MED14 3'UTR 0.30 TCGA-D5-6538-01 X 41075672 41075672 T - USP9X Frame_Shift_Del p.Y1953Mfs*7 0.41 TCGA-D5-6538-01 X 63406029 63406029 G T AMER1 3'UTR 0.28 TCGA-D5-6538-01 X 67432020 67432020 T G OPHN1 Missense_Mutation p.N211T 0.60 tolerated(0.11) probably_damaging(0.982) TCGA-D5-6538-01 X 78622662 78622662 C T ITM2A Silent p.A17A 0.29 TCGA-D5-6538-01 X 99662513 99662513 G A PCDH19 Silent p.S361S 0.20 TCGA-D5-6539-01 10 134942298 134942298 G A GPR123 Silent p.P322P 0.15 TCGA-D5-6539-01 10 55566703 55566703 G A PCDH15 Missense_Mutation p.T1561M 0.10 tolerated_low_confidence(0.11) benign(0.083) TCGA-D5-6539-01 10 88651920 88651920 T A BMPR1A Missense_Mutation p.D89E 0.18 tolerated(0.41) benign(0.067) TCGA-D5-6539-01 10 89692923 89692923 G T PTEN Missense_Mutation p.C136F 0.09 deleterious(0) probably_damaging(0.918) TCGA-D5-6539-01 11 119207119 119207119 C T RNF26 Silent p.L429L 0.11 TCGA-D5-6539-01 11 27695769 27695769 A G BDNF Silent p.N21N 0.11 TCGA-D5-6539-01 11 67176573 67176573 C T TBC1D10C Missense_Mutation p.A321V 0.11 tolerated(0.34) benign(0.022) TCGA-D5-6539-01 11 71184630 71184630 G - NADSYN1 Frame_Shift_Del p.G189Afs*28 0.09 TCGA-D5-6539-01 11 92088322 92088322 A G FAT3 Missense_Mutation p.K1015R 0.06 benign(0.174) TCGA-D5-6539-01 12 100887103 100887103 T A NR1H4 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.48) TCGA-D5-6539-01 12 102069101 102069101 T G MYBPC1 Missense_Mutation p.I940M 0.18 deleterious(0) possibly_damaging(0.753) TCGA-D5-6539-01 12 107002589 107002589 A G RFX4 Missense_Mutation p.R29G 0.08 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-D5-6539-01 12 18435300 18435300 A G PIK3C2G Silent p.E95E 0.09 TCGA-D5-6539-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.20 deleterious(0) possibly_damaging(0.479) TCGA-D5-6539-01 12 45568027 45568027 G T PLEKHA8P1 RNA 0.07 TCGA-D5-6539-01 12 5023800 5023800 C T KCNA1 3'UTR 0.06 TCGA-D5-6539-01 12 55945614 55945614 G A OR6C4 Missense_Mutation p.V202I 0.10 tolerated_low_confidence(0.3) benign(0.007) TCGA-D5-6539-01 12 91449308 91449308 C A KERA Missense_Mutation p.D251Y 0.15 deleterious(0) probably_damaging(0.957) TCGA-D5-6539-01 13 101756710 101756710 A G NALCN Missense_Mutation p.L942S 0.07 deleterious(0) probably_damaging(0.995) TCGA-D5-6539-01 13 38266236 38266236 G A TRPC4 Silent p.F378F 0.09 TCGA-D5-6539-01 13 70681402 70681402 C G KLHL1 Missense_Mutation p.V144L 0.04 tolerated_low_confidence(0.39) benign(0.001) TCGA-D5-6539-01 14 39648369 39648369 A G PNN Silent p.E191E 0.09 TCGA-D5-6539-01 14 50307529 50307529 C T NEMF Missense_Mutation p.R138Q 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-D5-6539-01 14 61518549 61518549 C T SLC38A6 Silent p.F365F 0.10 TCGA-D5-6539-01 15 101436251 101436251 G C ALDH1A3 Missense_Mutation p.E260D 0.09 tolerated(0.07) benign(0.018) TCGA-D5-6539-01 15 44829337 44829337 G T EIF3J 5'UTR 0.07 TCGA-D5-6539-01 15 45428804 45428804 C T DUOX1 Missense_Mutation p.P335S 0.11 deleterious(0) possibly_damaging(0.883) TCGA-D5-6539-01 15 50209183 50209183 C A ATP8B4 Missense_Mutation p.D697Y 0.12 tolerated(0.06) possibly_damaging(0.903) TCGA-D5-6539-01 16 2004054 2004054 C T RPL3L Silent p.P33P 0.11 TCGA-D5-6539-01 16 20681218 20681220 TTC - ACSM1 In_Frame_Del p.E281del 0.10 TCGA-D5-6539-01 16 30410482 30410482 T A ZNF48 3'UTR 0.27 TCGA-D5-6539-01 16 31091739 31091740 - T ZNF646 Frame_Shift_Ins p.C1366Lfs*22 0.16 TCGA-D5-6539-01 16 49670163 49670163 C T ZNF423 Missense_Mutation p.R967H 0.42 tolerated(0.05) probably_damaging(0.99) TCGA-D5-6539-01 17 11700948 11700948 C T DNAH9 Missense_Mutation p.P2753L 0.08 benign(0.001) TCGA-D5-6539-01 17 3195605 3195605 C T OR3A1 Missense_Mutation p.R91H 0.24 tolerated(1) benign(0) TCGA-D5-6539-01 17 4621206 4621206 G A ARRB2 Missense_Mutation p.R191Q 0.18 deleterious(0) possibly_damaging(0.729) TCGA-D5-6539-01 17 73239612 73239612 C T GGA3 Missense_Mutation p.V114I 0.12 tolerated(0.36) benign(0.086) TCGA-D5-6539-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.07 deleterious(0.02) probably_damaging(0.922) TCGA-D5-6539-01 17 7578369 7578369 A G TP53 Splice_Site p.X187_splice 0.18 TCGA-D5-6539-01 18 30092873 30092873 C G WBP11P1 RNA 0.19 TCGA-D5-6539-01 18 48327796 48327796 A T MRO Missense_Mutation p.F184I 0.08 deleterious(0) possibly_damaging(0.537) TCGA-D5-6539-01 18 60645712 60645712 A G PHLPP1 Missense_Mutation p.K1401R 0.10 tolerated(0.18) probably_damaging(1) TCGA-D5-6539-01 18 65178966 65178966 T G DSEL Missense_Mutation p.K970N 0.13 deleterious(0.03) possibly_damaging(0.452) TCGA-D5-6539-01 19 15374311 15374311 C G BRD4 Missense_Mutation p.D421H 0.10 probably_damaging(0.961) TCGA-D5-6539-01 19 43097846 43097846 G C CEACAM8 Missense_Mutation p.P91A 0.11 tolerated(0.45) benign(0.298) TCGA-D5-6539-01 19 46094520 46094520 C T GPR4 Missense_Mutation p.R202Q 0.14 tolerated(0.34) benign(0.008) TCGA-D5-6539-01 19 55451306 55451306 C G NLRP7 Missense_Mutation p.R294T 0.08 tolerated(0.08) benign(0.016) TCGA-D5-6539-01 19 5915152 5915152 G A CAPS Missense_Mutation p.G155R 0.29 deleterious(0) probably_damaging(0.998) TCGA-D5-6539-01 19 8959654 8959654 C T MUC16 Missense_Mutation p.C14493Y 0.12 benign(0.239) TCGA-D5-6539-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.20 deleterious(0) probably_damaging(0.998) TCGA-D5-6539-01 1 223567530 223567530 C T C1orf65 Missense_Mutation p.P238L 0.24 tolerated(0.06) benign(0.325) TCGA-D5-6539-01 1 225580032 225580032 G A DNAH14 Missense_Mutation p.R59Q 0.16 tolerated(1) benign(0.001) TCGA-D5-6539-01 1 248128883 248128883 G A OR2AK2 Missense_Mutation p.V84I 0.15 tolerated(0.54) benign(0) TCGA-D5-6539-01 1 39880006 39880006 C T KIAA0754 Missense_Mutation p.P1221S 0.14 unknown(0) TCGA-D5-6539-01 1 40768853 40768853 C T COL9A2 Missense_Mutation p.R518Q 0.08 deleterious(0.01) probably_damaging(0.952) TCGA-D5-6539-01 1 86934796 86934796 A T CLCA1 Missense_Mutation p.T48S 0.09 tolerated(0.1) benign(0.257) TCGA-D5-6539-01 1 89616226 89616226 G C GBP7 Missense_Mutation p.P220A 0.07 deleterious(0.05) benign(0.091) TCGA-D5-6539-01 20 23350277 23350277 C A GZF1 Missense_Mutation p.L562I 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6539-01 20 24646099 24646099 G A SYNDIG1 Missense_Mutation p.V246M 0.07 deleterious(0) probably_damaging(0.975) TCGA-D5-6539-01 20 35060991 35060991 C T DLGAP4 Missense_Mutation p.R291W 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6539-01 20 3893203 3893203 A G PANK2 Missense_Mutation p.K445R 0.24 tolerated(0.2) benign(0.066) TCGA-D5-6539-01 20 40120391 40120391 G A CHD6 Silent p.L461L 0.08 TCGA-D5-6539-01 21 35467788 35467788 C T SLC5A3 Silent p.F97F 0.25 TCGA-D5-6539-01 21 46875661 46875661 C A COL18A1 Missense_Mutation p.P73T 0.09 unknown(0) TCGA-D5-6539-01 22 26348303 26348303 C T MYO18B Nonsense_Mutation p.R1962* 0.32 TCGA-D5-6539-01 22 29630300 29630300 C A EMID1 Missense_Mutation p.R346S 0.34 deleterious(0.05) benign(0.392) TCGA-D5-6539-01 2 105859182 105859182 G A GPR45 Silent p.L289L 0.06 TCGA-D5-6539-01 2 122139878 122139878 C T CLASP1 Missense_Mutation p.D1133N 0.19 tolerated_low_confidence(0.09) benign(0.204) TCGA-D5-6539-01 2 228882320 228882320 C T SPHKAP Missense_Mutation p.E1084K 0.10 deleterious(0) probably_damaging(0.999) TCGA-D5-6539-01 2 230456326 230456326 T A DNER Missense_Mutation p.K185N 0.05 deleterious(0.03) possibly_damaging(0.848) TCGA-D5-6539-01 2 29416321 29416321 G A ALK Silent p.N1544N 0.10 TCGA-D5-6539-01 2 56098034 56098034 C A EFEMP1 Missense_Mutation p.V381F 0.07 deleterious(0.02) possibly_damaging(0.649) TCGA-D5-6539-01 2 84899582 84899582 A T DNAH6 Missense_Mutation p.N2196Y 0.10 deleterious(0.01) benign(0.389) TCGA-D5-6539-01 2 98354256 98354256 G A ZAP70 Missense_Mutation p.A507T 0.08 deleterious(0) probably_damaging(1) TCGA-D5-6539-01 3 100373781 100373781 G A GPR128 Silent p.K494K 0.06 TCGA-D5-6539-01 3 100494113 100494113 G T ABI3BP Missense_Mutation p.P756H 0.04 deleterious(0) probably_damaging(0.99) TCGA-D5-6539-01 3 126071770 126071770 G T KLF15 5'UTR 0.05 TCGA-D5-6539-01 3 130672750 130672750 C G ATP2C1 Missense_Mutation p.T240S 0.07 tolerated(1) benign(0.005) TCGA-D5-6539-01 3 134322979 134322979 G A KY Silent p.S476S 0.38 TCGA-D5-6539-01 3 15297538 15297538 T A SH3BP5 3'UTR 0.07 TCGA-D5-6539-01 3 16535380 16535380 A C RFTN1 5'UTR 0.08 TCGA-D5-6539-01 3 35786001 35786001 G A ARPP21 Intron 0.10 TCGA-D5-6539-01 3 40251444 40251444 G A MYRIP Missense_Mutation p.E589K 0.09 tolerated(0.05) benign(0.099) TCGA-D5-6539-01 3 78666911 78666911 C T ROBO1 Missense_Mutation p.G1386R 0.22 tolerated(0.79) probably_damaging(0.998) TCGA-D5-6539-01 4 114275877 114275877 C T ANK2 Missense_Mutation p.P2035S 0.06 benign(0.096) TCGA-D5-6539-01 4 122846250 122846250 C T TRPC3 Missense_Mutation p.A367T 0.12 tolerated(0.59) benign(0.001) TCGA-D5-6539-01 4 126242601 126242601 C T FAT4 Missense_Mutation p.R1679C 0.14 probably_damaging(0.972) TCGA-D5-6539-01 4 126372035 126372035 A C FAT4 Missense_Mutation p.L3288F 0.14 probably_damaging(1) TCGA-D5-6539-01 4 153896121 153896121 G A FHDC1 Missense_Mutation p.G560S 0.23 tolerated(0.12) benign(0.01) TCGA-D5-6539-01 4 158281179 158281179 G T GRIA2 Missense_Mutation p.L725F 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6539-01 4 420904 420904 A T ABCA11P Intron 0.09 TCGA-D5-6539-01 4 55956190 55956190 A C KDR Missense_Mutation p.V1042G 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6539-01 4 62813835 62813835 C A LPHN3 Missense_Mutation p.F814L 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-D5-6539-01 4 72994456 72994456 A G NPFFR2 Missense_Mutation p.I152V 0.08 tolerated(0.88) benign(0.006) TCGA-D5-6539-01 4 88996028 88996028 G A PKD2 Missense_Mutation p.V863M 0.06 deleterious(0.03) probably_damaging(0.938) TCGA-D5-6539-01 5 139193008 139193008 C T PSD2 Silent p.D162D 0.16 TCGA-D5-6539-01 5 147040769 147040769 G A JAKMIP2 Silent p.D123D 0.10 TCGA-D5-6539-01 5 158585865 158585865 T C RNF145 Missense_Mutation p.N632S 0.10 tolerated(0.22) benign(0.003) TCGA-D5-6539-01 5 159992468 159992468 T C ATP10B Missense_Mutation p.T1460A 0.06 deleterious_low_confidence(0) benign(0.217) TCGA-D5-6539-01 5 55251916 55251916 C T IL6ST Missense_Mutation p.V402I 0.18 tolerated(0.06) benign(0.01) TCGA-D5-6539-01 6 118879990 118879990 T C PLN Intron 0.13 TCGA-D5-6539-01 6 122741308 122741308 C G HSF2 Missense_Mutation p.Q208E 0.09 tolerated(0.25) benign(0.005) TCGA-D5-6539-01 6 123824954 123824954 C T TRDN Missense_Mutation p.A235T 0.15 tolerated_low_confidence(0.25) benign(0.166) TCGA-D5-6539-01 6 142711440 142711440 G C GPR126 Missense_Mutation p.R423P 0.11 tolerated(0.29) benign(0.002) TCGA-D5-6539-01 6 152552555 152552555 G C SYNE1 Missense_Mutation p.Q7004E 0.12 benign(0.24) TCGA-D5-6539-01 6 158342618 158342618 G A SNX9 Missense_Mutation p.M335I 0.06 deleterious(0) benign(0.053) TCGA-D5-6539-01 6 162683711 162683711 G A PARK2 Silent p.D86D 0.30 TCGA-D5-6539-01 6 32189017 32189017 C T NOTCH4 Silent p.Q179Q 0.04 TCGA-D5-6539-01 6 65612097 65612097 C A EYS Missense_Mutation p.G919W 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6539-01 7 103138294 103138294 C T RELN Missense_Mutation p.V2975M 0.11 deleterious(0) probably_damaging(0.998) TCGA-D5-6539-01 7 134617869 134617869 C T CALD1 Missense_Mutation p.R117W 0.11 deleterious(0) unknown(0) TCGA-D5-6539-01 7 136700425 136700425 T C CHRM2 Silent p.T271T 0.13 TCGA-D5-6539-01 7 137206621 137206621 G A DGKI Nonsense_Mutation p.R747* 0.07 TCGA-D5-6539-01 7 150768807 150768807 G A SLC4A2 Silent p.S741S 0.10 TCGA-D5-6539-01 7 19184587 19184587 G A FERD3L Silent p.Y133Y 0.11 TCGA-D5-6539-01 7 21678674 21678674 G T DNAH11 Missense_Mutation p.Q1650H 0.07 benign(0.046) TCGA-D5-6539-01 7 37951762 37951762 G T SFRP4 Silent p.P250P 0.31 TCGA-D5-6539-01 7 6085761 6085761 G A EIF2AK1 Nonsense_Mutation p.Q191* 0.22 TCGA-D5-6539-01 7 84697585 84697585 G C SEMA3D Missense_Mutation p.L171V 0.15 deleterious(0.01) benign(0.127) TCGA-D5-6539-01 7 86416062 86416062 C T GRM3 Silent p.Y318Y 0.17 TCGA-D5-6539-01 8 131964214 131964214 A G ADCY8 Missense_Mutation p.F381L 0.08 deleterious(0.01) benign(0.292) TCGA-D5-6539-01 8 144812314 144812314 C T FAM83H Missense_Mutation p.A147T 0.25 deleterious(0) probably_damaging(0.974) TCGA-D5-6539-01 8 145114560 145114560 C T OPLAH Missense_Mutation p.R102H 0.22 deleterious(0) benign(0.021) TCGA-D5-6539-01 8 67817462 67817462 G A MCMDC2 Missense_Mutation p.V591I 0.09 tolerated(1) benign(0.017) TCGA-D5-6539-01 9 115759922 115759922 C A ZNF883 RNA 0.07 TCGA-D5-6539-01 9 37733588 37733588 C T FRMPD1 Nonsense_Mutation p.R372* 0.25 TCGA-D5-6539-01 9 91617254 91617254 C T S1PR3 3'UTR 0.21 TCGA-D5-6539-01 X 155006575 155006576 - G SPRY3 3'UTR 0.16 TCGA-D5-6539-01 X 70346924 70346924 C T MED12 Missense_Mutation p.R931W 0.10 probably_damaging(0.99) TCGA-D5-6539-01 X 70517783 70517783 G T NONO Missense_Mutation p.D376Y 0.08 deleterious(0) possibly_damaging(0.737) TCGA-D5-6539-01 X 70517784 70517784 A T NONO Missense_Mutation p.D376V 0.08 deleterious(0) possibly_damaging(0.483) TCGA-D5-6540-01 10 102056933 102056933 G A PKD2L1 Missense_Mutation p.A330V 0.51 tolerated(0.42) probably_damaging(0.96) TCGA-D5-6540-01 10 102740717 102740717 G A SEMA4G Missense_Mutation p.A536T 0.33 tolerated(0.56) benign(0.03) TCGA-D5-6540-01 10 102896648 102896648 C T TLX1 Missense_Mutation p.S324L 0.42 deleterious(0) possibly_damaging(0.449) TCGA-D5-6540-01 10 103869722 103869722 G A LDB1 Missense_Mutation p.R202W 0.41 deleterious(0) probably_damaging(0.996) TCGA-D5-6540-01 10 104120097 104120097 A G GBF1 Missense_Mutation p.Q445R 0.41 tolerated(0.41) benign(0.004) TCGA-D5-6540-01 10 104171503 104171503 G A PSD Nonsense_Mutation p.R635* 0.46 TCGA-D5-6540-01 10 104182667 104182667 G A FBXL15 Missense_Mutation p.D274N 0.42 deleterious(0) probably_damaging(0.978) TCGA-D5-6540-01 10 104375087 104375087 G A SUFU Missense_Mutation p.R362H 0.33 tolerated(0.09) benign(0.142) TCGA-D5-6540-01 10 104416664 104416664 G T TRIM8 Silent p.A403A 0.45 TCGA-D5-6540-01 10 104860824 104860825 - A NT5C2 Frame_Shift_Ins p.T173Yfs*2 0.07 TCGA-D5-6540-01 10 11330456 11330456 G T CELF2 Missense_Mutation p.S306I 0.29 tolerated(0.13) benign(0.028) TCGA-D5-6540-01 10 116057096 116057096 G A AFAP1L2 Silent p.R730R 0.27 TCGA-D5-6540-01 10 119001291 119001291 G A SLC18A2 Silent p.A29A 0.13 TCGA-D5-6540-01 10 119044053 119044053 G A PDZD8 Missense_Mutation p.H731Y 0.25 tolerated(0.52) benign(0.005) TCGA-D5-6540-01 10 120795647 120795647 T - EIF3A Frame_Shift_Del p.E1352Rfs*43 0.32 TCGA-D5-6540-01 10 121411254 121411254 C - BAG3 Frame_Shift_Del p.G25Dfs*186 0.24 TCGA-D5-6540-01 10 122665427 122665427 C T WDR11 Missense_Mutation p.R1111W 0.31 deleterious(0) probably_damaging(0.988) TCGA-D5-6540-01 10 124598660 124598660 G T CUZD1 Nonsense_Mutation p.C107* 0.39 TCGA-D5-6540-01 10 125447486 125447486 G - GPR26 Frame_Shift_Del p.V277Cfs*33 0.28 TCGA-D5-6540-01 10 125804305 125804305 C T CHST15 Missense_Mutation p.R226H 0.42 deleterious(0) probably_damaging(0.978) TCGA-D5-6540-01 10 126311956 126311956 C T FAM53B Missense_Mutation p.C375Y 0.39 tolerated(1) benign(0.086) TCGA-D5-6540-01 10 127484719 127484719 C T UROS Missense_Mutation p.A172T 0.33 tolerated(0.15) benign(0.059) TCGA-D5-6540-01 10 13151192 13151192 C - OPTN Frame_Shift_Del p.H26Tfs*19 0.32 TCGA-D5-6540-01 10 131666125 131666125 C - EBF3 Frame_Shift_Del p.G269Vfs*6 0.13 TCGA-D5-6540-01 10 13167509 13167509 C T OPTN Nonsense_Mutation p.Q364* 0.05 TCGA-D5-6540-01 10 13237180 13237180 C T MCM10 Nonsense_Mutation p.R630* 0.14 TCGA-D5-6540-01 10 16942780 16942780 C A CUBN Missense_Mutation p.G2752C 0.39 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 10 18134040 18134040 A T MRC1 Intron 0.37 TCGA-D5-6540-01 10 18429709 18429709 C T CACNB2 Missense_Mutation p.A15V 0.30 tolerated_low_confidence(0.41) benign(0.038) TCGA-D5-6540-01 10 21805698 21805700 GGT - SKIDA1 In_Frame_Del p.H351del 0.21 TCGA-D5-6540-01 10 22002826 22002826 G A MLLT10 Missense_Mutation p.A609T 0.08 tolerated(0.36) benign(0.004) TCGA-D5-6540-01 10 25010880 25010880 G A ARHGAP21 5'UTR 0.30 TCGA-D5-6540-01 10 25313741 25313741 T A THNSL1 Missense_Mutation p.F530Y 0.39 deleterious(0.01) possibly_damaging(0.901) TCGA-D5-6540-01 10 27537135 27537135 C T RP11-85G18.6 Intron 0.46 TCGA-D5-6540-01 10 28030433 28030433 G A MKX Silent p.G63G 0.68 TCGA-D5-6540-01 10 28970223 28970223 T C BAMBI Missense_Mutation p.V38A 0.28 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 10 29776096 29776096 G A SVIL Missense_Mutation p.A1494V 0.32 deleterious(0) probably_damaging(0.967) TCGA-D5-6540-01 10 29788083 29788083 G A SVIL Missense_Mutation p.S1209L 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6540-01 10 29822161 29822161 G T SVIL Missense_Mutation p.L379I 0.32 tolerated_low_confidence(0.08) benign(0.022) TCGA-D5-6540-01 10 3146059 3146059 C T PFKP Silent p.T181T 0.40 TCGA-D5-6540-01 10 38242674 38242674 C T ZNF25 Missense_Mutation p.S84N 0.10 tolerated(0.5) benign(0) TCGA-D5-6540-01 10 43604668 43604668 G A RET Missense_Mutation p.R418Q 0.30 tolerated(0.23) benign(0.188) TCGA-D5-6540-01 10 44104153 44104153 T G ZNF485 Missense_Mutation p.V39G 0.13 deleterious(0.02) probably_damaging(0.975) TCGA-D5-6540-01 10 45498706 45498706 T - ZNF22 Intron 0.34 TCGA-D5-6540-01 10 48388269 48388269 T C RBP3 Missense_Mutation p.E870G 0.30 deleterious(0) possibly_damaging(0.728) TCGA-D5-6540-01 10 49659085 49659085 C A ARHGAP22 Missense_Mutation p.G379C 0.45 deleterious(0.02) possibly_damaging(0.673) TCGA-D5-6540-01 10 50339843 50339843 C T FAM170B Missense_Mutation p.A223T 0.32 deleterious(0.02) possibly_damaging(0.651) TCGA-D5-6540-01 10 50667015 50667015 C T ERCC6 Missense_Mutation p.G1443D 0.41 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 10 50819242 50819242 C T SLC18A3 Silent p.D152D 0.09 TCGA-D5-6540-01 10 50819553 50819553 C T SLC18A3 Missense_Mutation p.A256V 0.25 deleterious(0) possibly_damaging(0.883) TCGA-D5-6540-01 10 54529022 54529022 C T MBL2 Missense_Mutation p.A120T 0.43 deleterious(0.05) benign(0.003) TCGA-D5-6540-01 10 55566510 55566510 C T PCDH15 Silent p.A1625A 0.39 TCGA-D5-6540-01 10 55569185 55569185 C A PCDH15 Missense_Mutation p.R476I 0.07 deleterious_low_confidence(0) unknown(0) TCGA-D5-6540-01 10 60549211 60549211 G A BICC1 Missense_Mutation p.V264M 0.37 tolerated(0.06) benign(0.09) TCGA-D5-6540-01 10 63519910 63519910 C - C10orf107 Frame_Shift_Del p.T130Qfs*7 0.32 TCGA-D5-6540-01 10 68139015 68139015 G A CTNNA3 Missense_Mutation p.R543W 0.40 deleterious(0) unknown(0) TCGA-D5-6540-01 10 70645390 70645390 A - STOX1 Frame_Shift_Del p.N614Mfs*3 0.26 TCGA-D5-6540-01 10 73051466 73051466 G A UNC5B Silent p.L524L 0.39 TCGA-D5-6540-01 10 73588780 73588780 G - PSAP Frame_Shift_Del p.H144Tfs*2 0.29 TCGA-D5-6540-01 10 7409656 7409656 C T SFMBT2 Missense_Mutation p.V131M 0.31 deleterious(0) probably_damaging(0.939) TCGA-D5-6540-01 10 75008771 75008771 G T MRPS16 3'UTR 0.30 TCGA-D5-6540-01 10 75185569 75185569 C G MSS51 Missense_Mutation p.G357R 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-D5-6540-01 10 75434771 75434772 - A AGAP5 Frame_Shift_Ins p.Q549Hfs*24 0.11 TCGA-D5-6540-01 10 7801788 7801789 - A KIN Intron 0.47 TCGA-D5-6540-01 10 83635422 83635422 G A NRG3 Missense_Mutation p.G109D 0.34 deleterious(0.01) possibly_damaging(0.475) TCGA-D5-6540-01 10 863810 863810 G T LARP4B Missense_Mutation p.P517Q 0.38 deleterious(0.04) probably_damaging(0.96) TCGA-D5-6540-01 10 87373269 87373269 G A GRID1 Silent p.A832A 0.33 TCGA-D5-6540-01 10 88476189 88476189 C - LDB3 Frame_Shift_Del p.S453Hfs*44 0.34 TCGA-D5-6540-01 10 88492745 88492745 C T LDB3 3'UTR 0.40 TCGA-D5-6540-01 10 88911797 88911797 G A FAM35A Missense_Mutation p.R229K 0.09 tolerated(0.57) benign(0.056) TCGA-D5-6540-01 10 90966857 90966857 C - CH25H Frame_Shift_Del p.V65Cfs*32 0.27 TCGA-D5-6540-01 10 910159 910159 C - LARP4B Frame_Shift_Del p.A65Lfs*15 0.27 TCGA-D5-6540-01 10 94688161 94688161 G A EXOC6 Silent p.L318L 0.33 TCGA-D5-6540-01 10 95720310 95720310 C T PIPSL RNA 0.17 TCGA-D5-6540-01 10 97920508 97920508 G A ZNF518A RNA 0.37 TCGA-D5-6540-01 10 98469505 98469505 G T PIK3AP1 Silent p.A83A 0.32 TCGA-D5-6540-01 11 102743627 102743627 C - MMP12 RNA 0.31 TCGA-D5-6540-01 11 103797821 103797821 C T PDGFD Missense_Mutation p.R269H 0.25 tolerated(0.08) benign(0.052) TCGA-D5-6540-01 11 10789625 10789625 A C CTR9 Missense_Mutation p.K626T 0.28 deleterious(0) possibly_damaging(0.515) TCGA-D5-6540-01 11 1095705 1095705 G A MUC2 Silent p.T2072T 0.37 TCGA-D5-6540-01 11 110104137 110104137 G - RDX Frame_Shift_Del p.P471Lfs*35 0.28 TCGA-D5-6540-01 11 111154931 111154931 C A C11orf53 Silent p.S46S 0.38 TCGA-D5-6540-01 11 113270898 113270898 G A ANKK1 Missense_Mutation p.R736Q 0.33 tolerated(1) benign(0.001) TCGA-D5-6540-01 11 116643567 116643567 C T BUD13 Silent p.R38R 0.31 TCGA-D5-6540-01 11 116734507 116734507 C A SIK3 Silent p.L554L 0.40 TCGA-D5-6540-01 11 117301450 117301450 G A DSCAML1 Missense_Mutation p.R1952W 0.37 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 11 118255420 118255420 G A UBE4A Nonsense_Mutation p.W763* 0.30 TCGA-D5-6540-01 11 118454555 118454555 G A ARCN1 Missense_Mutation p.R160H 0.38 deleterious(0.01) possibly_damaging(0.701) TCGA-D5-6540-01 11 119061042 119061043 - G CCDC153 Frame_Shift_Ins p.G201Wfs*9 0.31 TCGA-D5-6540-01 11 125472738 125472738 T - STT3A Frame_Shift_Del p.F106Sfs*45 0.37 TCGA-D5-6540-01 11 1260199 1260199 C T MUC5B Silent p.Y1132Y 0.37 TCGA-D5-6540-01 11 1275983 1275984 TG - MUC5B Frame_Shift_Del p.V5180Afs*98 0.31 TCGA-D5-6540-01 11 1277970 1277970 C T MUC5B Silent p.N5402N 0.27 TCGA-D5-6540-01 11 1282977 1282977 C - MUC5B 3'UTR 0.33 TCGA-D5-6540-01 11 128840392 128840392 C T ARHGAP32 Silent p.V1558V 0.49 TCGA-D5-6540-01 11 129782004 129782004 G A PRDM10 Silent p.T990T 0.35 TCGA-D5-6540-01 11 129990648 129990648 T - APLP2 Frame_Shift_Del p.F152Sfs*18 0.31 TCGA-D5-6540-01 11 130079819 130079819 G A ST14 3'UTR 0.38 TCGA-D5-6540-01 11 130319222 130319222 C A ADAMTS15 Missense_Mutation p.S118R 0.48 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 11 134212802 134212802 C T GLB1L2 Missense_Mutation p.R81C 0.34 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 11 13984525 13984525 C T SPON1 RNA 0.41 TCGA-D5-6540-01 11 1587096 1587098 GAG - DUSP8 5'UTR 0.50 TCGA-D5-6540-01 11 16424308 16424308 A - SOX6 Intron 0.37 TCGA-D5-6540-01 11 17126787 17126787 C A PIK3C2A Nonsense_Mutation p.G1204* 0.36 TCGA-D5-6540-01 11 17531123 17531123 C T USH1C Missense_Mutation p.R598H 0.20 tolerated_low_confidence(0.37) benign(0) TCGA-D5-6540-01 11 18418442 18418442 C - LDHA Frame_Shift_Del p.Q49Rfs*21 0.27 TCGA-D5-6540-01 11 1856379 1856379 G T SYT8 Missense_Mutation p.G29V 0.11 deleterious(0.03) possibly_damaging(0.521) TCGA-D5-6540-01 11 19247044 19247044 G A E2F8 Silent p.S715S 0.30 TCGA-D5-6540-01 11 19901631 19901631 C T NAV2 Missense_Mutation p.A243V 0.45 tolerated_low_confidence(0.11) benign(0.003) TCGA-D5-6540-01 11 20959373 20959373 C T NELL1 Missense_Mutation p.R347W 0.41 tolerated(0.05) benign(0.046) TCGA-D5-6540-01 11 2356907 2356907 C T CD81-AS1 Intron 0.52 TCGA-D5-6540-01 11 2423847 2423847 C T TSSC4 5'UTR 0.45 TCGA-D5-6540-01 11 27384649 27384649 G C CCDC34 Missense_Mutation p.D31E 0.24 deleterious_low_confidence(0.04) benign(0.006) TCGA-D5-6540-01 11 27680897 27680897 T - BDNF Intron 0.24 TCGA-D5-6540-01 11 30352754 30352754 A - ARL14EP Frame_Shift_Del p.N89Ifs*4 0.42 TCGA-D5-6540-01 11 35515735 35515735 G A PAMR1 Silent p.C53C 0.32 TCGA-D5-6540-01 11 35641589 35641589 G A FJX1 3'UTR 0.70 TCGA-D5-6540-01 11 36600080 36600080 C A RAG1 3'UTR 0.29 TCGA-D5-6540-01 11 40137606 40137606 C T LRRC4C Silent p.R79R 0.33 TCGA-D5-6540-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.35 TCGA-D5-6540-01 11 45918474 45918474 G A MAPK8IP1 Intron 0.31 TCGA-D5-6540-01 11 46702224 46702224 G - ARHGAP1 Frame_Shift_Del p.L237Cfs*135 0.34 TCGA-D5-6540-01 11 4674344 4674344 G A OR51E1 Silent p.R196R 0.32 TCGA-D5-6540-01 11 46776572 46776572 C T CKAP5 Missense_Mutation p.G1579S 0.14 tolerated(0.26) probably_damaging(0.964) TCGA-D5-6540-01 11 47493780 47493780 G A CELF1 3'UTR 0.08 TCGA-D5-6540-01 11 47505958 47505958 G T CELF1 Missense_Mutation p.P169H 0.34 deleterious(0.01) possibly_damaging(0.808) TCGA-D5-6540-01 11 48285454 48285455 - T OR4X1 Frame_Shift_Ins p.S16Ffs*6 0.29 TCGA-D5-6540-01 11 5536505 5536505 G A UBQLNL Silent p.T389T 0.40 TCGA-D5-6540-01 11 55587532 55587532 G T OR5D18 Missense_Mutation p.V143L 0.38 tolerated(0.07) benign(0.006) TCGA-D5-6540-01 11 57076081 57076081 G A TNKS1BP1 Silent p.G1368G 0.32 TCGA-D5-6540-01 11 57077118 57077119 CT - TNKS1BP1 Frame_Shift_Del p.G1023Ifs*8 0.36 TCGA-D5-6540-01 11 57958096 57958096 T C OR9Q2 Missense_Mutation p.M45T 0.37 deleterious(0.03) benign(0.014) TCGA-D5-6540-01 11 58958609 58958609 A - DTX4 Frame_Shift_Del p.K396Nfs*34 0.23 TCGA-D5-6540-01 11 60482507 60482507 C T MS4A8 Missense_Mutation p.A183V 0.35 tolerated(0.09) benign(0.343) TCGA-D5-6540-01 11 60689554 60689554 C T TMEM109 Nonsense_Mutation p.R217* 0.44 TCGA-D5-6540-01 11 61252829 61252829 C T PPP1R32 Missense_Mutation p.S177L 0.30 deleterious(0) probably_damaging(0.946) TCGA-D5-6540-01 11 61641339 61641339 T C FADS3 Splice_Site p.X429_splice 0.16 TCGA-D5-6540-01 11 62289245 62289245 G A AHNAK Missense_Mutation p.A4215V 0.33 possibly_damaging(0.808) TCGA-D5-6540-01 11 62416870 62416870 C A INTS5 Missense_Mutation p.A228S 0.39 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 11 6261723 6261723 C T CNGA4 Silent p.G233G 0.36 TCGA-D5-6540-01 11 6292085 6292085 C T CCKBR Intron 0.16 TCGA-D5-6540-01 11 63326100 63326100 G T HRASLS2 Missense_Mutation p.L51M 0.39 tolerated(1) benign(0.017) TCGA-D5-6540-01 11 63594689 63594689 A G C11orf84 3'UTR 0.48 TCGA-D5-6540-01 11 64137808 64137808 G A RPS6KA4 Missense_Mutation p.G637R 0.38 deleterious(0.01) possibly_damaging(0.584) TCGA-D5-6540-01 11 6417100 6417100 G A APBB1 Silent p.A625A 0.35 TCGA-D5-6540-01 11 64402872 64402872 C T NRXN2 Nonsense_Mutation p.W1152* 0.11 TCGA-D5-6540-01 11 64533492 64533492 A C SF1 Intron 0.44 TCGA-D5-6540-01 11 64572093 64572093 G - MEN1 Frame_Shift_Del p.R521Gfs*43 0.19 TCGA-D5-6540-01 11 65306696 65306696 T A LTBP3 Missense_Mutation p.D1256V 0.27 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 11 65366961 65366961 C T MAP3K11 Missense_Mutation p.D704N 0.38 tolerated_low_confidence(0.48) benign(0) TCGA-D5-6540-01 11 66034015 66034015 G A KLC2 Intron 0.42 TCGA-D5-6540-01 11 66392856 66392856 C A RBM14 Silent p.A503A 0.15 TCGA-D5-6540-01 11 66816108 66816108 C A SYT12 Missense_Mutation p.D382E 0.35 tolerated(0.65) benign(0.002) TCGA-D5-6540-01 11 67220114 67220114 G A GPR152 Nonsense_Mutation p.Q28* 0.11 TCGA-D5-6540-01 11 67412275 67412275 T C ACY3 Missense_Mutation p.T234A 0.31 tolerated(0.18) benign(0.012) TCGA-D5-6540-01 11 688343 688343 G A DEAF1 Missense_Mutation p.P169S 0.34 tolerated(0.13) possibly_damaging(0.827) TCGA-D5-6540-01 11 71249400 71249400 G A KRTAP5-8 Missense_Mutation p.C100Y 0.39 deleterious(0) unknown(0) TCGA-D5-6540-01 11 71507092 71507092 T C FAM86C1 Silent p.C97C 0.18 TCGA-D5-6540-01 11 72549783 72549783 C T FCHSD2 3'UTR 0.39 TCGA-D5-6540-01 11 73074283 73074283 G A ARHGEF17 Missense_Mutation p.A1677T 0.39 tolerated(0.4) benign(0.027) TCGA-D5-6540-01 11 74081973 74081973 A - PGM2L1 Frame_Shift_Del p.S149Qfs*22 0.26 TCGA-D5-6540-01 11 74109260 74109260 G - PGM2L1 5'UTR 0.21 TCGA-D5-6540-01 11 75134762 75134763 CC - KLHL35 Frame_Shift_Del p.E513Gfs*17 0.29 TCGA-D5-6540-01 11 76637669 76637669 G A ACER3 Missense_Mutation p.G58S 0.11 deleterious(0.04) possibly_damaging(0.501) TCGA-D5-6540-01 11 77594892 77594892 T C INTS4 Missense_Mutation p.H900R 0.30 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 11 82984894 82984894 C T CCDC90B Missense_Mutation p.R161Q 0.41 tolerated(0.1) benign(0.076) TCGA-D5-6540-01 11 830279 830279 G A EFCAB4A Missense_Mutation p.R212H 0.46 deleterious(0) benign(0.35) TCGA-D5-6540-01 11 85733498 85733498 T C PICALM Missense_Mutation p.T122A 0.41 deleterious(0.03) benign(0.059) TCGA-D5-6540-01 11 86056792 86056792 C A C11orf73 3'UTR 0.36 TCGA-D5-6540-01 11 8673385 8673386 - A TRIM66 5'UTR 0.30 TCGA-D5-6540-01 11 89537338 89537339 - T TRIM49 Frame_Shift_Ins p.K101Efs*5 0.20 TCGA-D5-6540-01 11 93822134 93822134 G T HEPHL1 Missense_Mutation p.R765I 0.47 deleterious(0.01) possibly_damaging(0.53) TCGA-D5-6540-01 11 94281101 94281101 G T FUT4 3'UTR 0.33 TCGA-D5-6540-01 11 94320250 94320250 T C PIWIL4 Missense_Mutation p.S251P 0.38 tolerated(0.17) benign(0.163) TCGA-D5-6540-01 12 101760383 101760383 G T UTP20 Missense_Mutation p.C2058F 0.36 deleterious(0.01) probably_damaging(0.947) TCGA-D5-6540-01 12 106460703 106460703 C T NUAK1 Silent p.R621R 0.32 TCGA-D5-6540-01 12 108098482 108098483 AG - PWP1 Frame_Shift_Del p.R347Sfs*17 0.09 TCGA-D5-6540-01 12 108169973 108169973 A - ASCL4 3'UTR 0.38 TCGA-D5-6540-01 12 109072163 109072163 C T CORO1C Missense_Mutation p.R68Q 0.41 deleterious(0) probably_damaging(0.993) TCGA-D5-6540-01 12 109520484 109520484 C T USP30 Missense_Mutation p.T295M 0.39 tolerated(0.09) possibly_damaging(0.643) TCGA-D5-6540-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.23 TCGA-D5-6540-01 12 110765469 110765469 C T ATP2A2 Missense_Mutation p.P248S 0.46 deleterious(0.01) probably_damaging(0.96) TCGA-D5-6540-01 12 11082900 11082900 T C PRH2 Missense_Mutation p.S33P 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.504) TCGA-D5-6540-01 12 112481520 112481521 - C NAA25 Frame_Shift_Ins p.V720Gfs*6 0.16 TCGA-D5-6540-01 12 112610661 112610661 C T HECTD4 Missense_Mutation p.A3721T 0.34 benign(0.004) TCGA-D5-6540-01 12 113552705 113552705 G A RASAL1 Missense_Mutation p.P361S 0.31 tolerated(0.07) possibly_damaging(0.783) TCGA-D5-6540-01 12 113595398 113595398 C - DDX54 3'UTR 0.35 TCGA-D5-6540-01 12 11546149 11546149 G - PRB2 Frame_Shift_Del p.P288Hfs*143 0.27 TCGA-D5-6540-01 12 117977586 117977586 G A KSR2 Missense_Mutation p.P542L 0.16 tolerated(0.07) probably_damaging(1) TCGA-D5-6540-01 12 120263122 120263122 C T CIT Silent p.V268V 0.44 TCGA-D5-6540-01 12 120536676 120536676 G A RAB35 Missense_Mutation p.A139V 0.43 deleterious(0) possibly_damaging(0.897) TCGA-D5-6540-01 12 120650333 120650333 C A PXN Missense_Mutation p.Q534H 0.31 deleterious(0.02) benign(0.092) TCGA-D5-6540-01 12 120653032 120653032 C - PXN Frame_Shift_Del p.P342Rfs*18 0.30 TCGA-D5-6540-01 12 121093958 121093958 T C CABP1 Intron 0.11 TCGA-D5-6540-01 12 121868235 121868237 GAA - KDM2B In_Frame_Del p.F1289del 0.12 TCGA-D5-6540-01 12 122255372 122255372 G A SETD1B Missense_Mutation p.R1025Q 0.25 unknown(0) TCGA-D5-6540-01 12 122265734 122265734 G A SETD1B Missense_Mutation p.E1812K 0.36 unknown(0) TCGA-D5-6540-01 12 122702844 122702844 G A DIABLO Missense_Mutation p.A95V 0.41 deleterious(0.02) possibly_damaging(0.869) TCGA-D5-6540-01 12 122773037 122773037 T - CLIP1 Frame_Shift_Del p.R1216Efs*6 0.23 TCGA-D5-6540-01 12 123416859 123416859 G A ABCB9 Silent p.G640G 0.33 TCGA-D5-6540-01 12 123433276 123433276 G A ABCB9 Silent p.G316G 0.39 TCGA-D5-6540-01 12 124422025 124422025 C T CCDC92 Silent p.A192A 0.45 TCGA-D5-6540-01 12 125432480 125432480 G A DHX37 Intron 0.36 TCGA-D5-6540-01 12 12629892 12629892 G A DUSP16 Missense_Mutation p.R625C 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-D5-6540-01 12 12630639 12630639 G A DUSP16 Silent p.L376L 0.49 TCGA-D5-6540-01 12 12871053 12871053 C - CDKN1B Frame_Shift_Del p.G97Vfs*22 0.16 TCGA-D5-6540-01 12 130855802 130855802 C T PIWIL1 Silent p.S801S 0.36 TCGA-D5-6540-01 12 132549252 132549252 C - EP400 Frame_Shift_Del p.P2793Rfs*46 0.24 TCGA-D5-6540-01 12 132683761 132683761 G A GALNT9 Silent p.G119G 0.35 TCGA-D5-6540-01 12 133226388 133226388 C T POLE Missense_Mutation p.A1224T 0.39 tolerated(0.61) benign(0) TCGA-D5-6540-01 12 13715632 13715633 - C GRIN2B 3'UTR 0.28 TCGA-D5-6540-01 12 13716682 13716682 G A GRIN2B Missense_Mutation p.R1164C 0.44 deleterious(0.01) possibly_damaging(0.589) TCGA-D5-6540-01 12 13906452 13906452 G T GRIN2B Missense_Mutation p.P270H 0.41 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 12 14928375 14928375 G A H2AFJ 3'UTR 0.09 TCGA-D5-6540-01 12 15068529 15068529 G A ERP27 Missense_Mutation p.A223V 0.37 deleterious(0) probably_damaging(0.94) TCGA-D5-6540-01 12 16713405 16713405 G A LMO3 Missense_Mutation p.R114C 0.42 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 12 19427544 19427545 - A PLEKHA5 Frame_Shift_Ins p.N316Kfs*8 0.26 TCGA-D5-6540-01 12 20522416 20522416 C T PDE3A Silent p.C66C 0.18 TCGA-D5-6540-01 12 2055326 2055326 G T DCP1B 3'UTR 0.11 TCGA-D5-6540-01 12 22061065 22061065 C T ABCC9 Silent p.A467A 0.34 TCGA-D5-6540-01 12 24365404 24365405 - G MIR920 RNA 0.30 TCGA-D5-6540-01 12 29671409 29671409 T C TMTC1 Missense_Mutation p.K674E 0.29 deleterious(0.01) benign(0.392) TCGA-D5-6540-01 12 2977833 2977833 C T FOXM1 Missense_Mutation p.A248T 0.37 deleterious(0.02) probably_damaging(0.967) TCGA-D5-6540-01 12 32778624 32778624 C T FGD4 Nonsense_Mutation p.R558* 0.35 TCGA-D5-6540-01 12 39124096 39124096 T C CPNE8 Missense_Mutation p.N263D 0.31 tolerated(0.35) benign(0.205) TCGA-D5-6540-01 12 40748218 40748218 G T LRRK2 Missense_Mutation p.G2232W 0.37 deleterious(0.02) possibly_damaging(0.541) TCGA-D5-6540-01 12 43846175 43846175 C T ADAMTS20 Missense_Mutation p.A661T 0.34 tolerated(0.06) probably_damaging(0.939) TCGA-D5-6540-01 12 44915896 44915896 A - NELL2 Frame_Shift_Del p.C738Afs*90 0.34 TCGA-D5-6540-01 12 4870216 4870216 C T GALNT8 Silent p.T422T 0.35 TCGA-D5-6540-01 12 49424177 49424178 - G KMT2D Frame_Shift_Ins p.T4629Hfs*18 0.28 TCGA-D5-6540-01 12 49433302 49433302 C - KMT2D Frame_Shift_Del p.P2716Lfs*17 0.14 TCGA-D5-6540-01 12 49494371 49494371 G A LMBR1L Missense_Mutation p.R381W 0.26 tolerated(0.19) benign(0) TCGA-D5-6540-01 12 49717994 49717994 G A TROAP Intron 0.08 TCGA-D5-6540-01 12 49958666 49958666 G T MCRS1 Missense_Mutation p.P114T 0.31 tolerated(0.47) benign(0.001) TCGA-D5-6540-01 12 52284633 52284633 G - ANKRD33 Frame_Shift_Del p.G303Vfs*7 0.30 TCGA-D5-6540-01 12 52636889 52636889 C A KRT7 Missense_Mutation p.L318M 0.39 deleterious(0.02) possibly_damaging(0.577) TCGA-D5-6540-01 12 52709805 52709805 G A KRT83 Silent p.G378G 0.30 TCGA-D5-6540-01 12 52938276 52938276 G A KRT71 3'UTR 0.08 TCGA-D5-6540-01 12 53040534 53040534 C T KRT2 Missense_Mutation p.E487K 0.44 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 12 53573562 53573562 G A CSAD Silent p.L11L 0.12 TCGA-D5-6540-01 12 54396261 54396261 C T HOXC9 Missense_Mutation p.R196C 0.47 deleterious(0) probably_damaging(0.996) TCGA-D5-6540-01 12 56515718 56515718 A G ZC3H10 3'UTR 0.11 TCGA-D5-6540-01 12 57110008 57110008 G A NACA Intron 0.39 TCGA-D5-6540-01 12 57629554 57629554 A G NDUFA4L2 Missense_Mutation p.L62P 0.10 deleterious(0.03) possibly_damaging(0.685) TCGA-D5-6540-01 12 57927805 57927806 - G DCTN2 Frame_Shift_Ins p.D206Rfs*2 0.35 TCGA-D5-6540-01 12 58005763 58005763 G - ARHGEF25 Intron 0.36 TCGA-D5-6540-01 12 58008372 58008372 G A ARHGEF25 Missense_Mutation p.G306E 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-D5-6540-01 12 58121550 58121550 C T AGAP2 Missense_Mutation p.R924H 0.43 deleterious(0) probably_damaging(0.996) TCGA-D5-6540-01 12 58121641 58121641 C T AGAP2-AS1 3'UTR 0.21 TCGA-D5-6540-01 12 64061935 64061935 C T DPY19L2 Missense_Mutation p.G80D 0.58 tolerated_low_confidence(0.08) benign(0.004) TCGA-D5-6540-01 12 6495562 6495562 G A LTBR Missense_Mutation p.D207N 0.30 deleterious(0) probably_damaging(0.931) TCGA-D5-6540-01 12 6579806 6579806 G A VAMP1 5'UTR 0.50 TCGA-D5-6540-01 12 6579819 6579819 C A VAMP1 5'UTR 0.33 TCGA-D5-6540-01 12 6657974 6657974 C - IFFO1 Frame_Shift_Del p.R367Gfs*47 0.39 TCGA-D5-6540-01 12 6788171 6788171 G A ZNF384 Missense_Mutation p.A82V 0.34 tolerated(0.08) benign(0.154) TCGA-D5-6540-01 12 68054879 68054879 T C DYRK2 3'UTR 0.29 TCGA-D5-6540-01 12 68642497 68642497 A - IL22 3'UTR 0.24 TCGA-D5-6540-01 12 6939693 6939693 G - LEPREL2 Frame_Shift_Del p.G277Afs*42 0.29 TCGA-D5-6540-01 12 6946231 6946231 C T LEPREL2 Missense_Mutation p.T513M 0.48 deleterious(0) probably_damaging(0.996) TCGA-D5-6540-01 12 6948611 6948611 C T LEPREL2 Missense_Mutation p.R732W 0.20 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 12 69666768 69666768 T C CPSF6 3'UTR 0.45 TCGA-D5-6540-01 12 7295791 7295791 C T CLSTN3 Silent p.T577T 0.42 TCGA-D5-6540-01 12 74931858 74931858 A G ATXN7L3B 5'UTR 0.40 TCGA-D5-6540-01 12 7868820 7868820 G A DPPA3 Silent p.E118E 0.04 TCGA-D5-6540-01 12 7899953 7899953 C T CLEC4C 5'UTR 0.38 TCGA-D5-6540-01 12 81734892 81734895 GTGA - PPFIA2 Frame_Shift_Del p.H786Lfs*48 0.16 TCGA-D5-6540-01 12 81746996 81746996 A - PPFIA2 Frame_Shift_Del p.F632Lfs*18 0.27 TCGA-D5-6540-01 12 82746946 82746947 - T CCDC59 Frame_Shift_Ins p.I237Nfs*20 0.28 TCGA-D5-6540-01 12 8673818 8673818 A T CLEC4D Missense_Mutation p.N200I 0.20 deleterious(0) possibly_damaging(0.804) TCGA-D5-6540-01 12 9089812 9089812 A - PHC1 Frame_Shift_Del p.M842* 0.31 TCGA-D5-6540-01 12 91347962 91347962 C T CCER1 Silent p.P186P 0.08 TCGA-D5-6540-01 12 91348380 91348380 G T CCER1 Missense_Mutation p.A47E 0.38 deleterious(0) benign(0.015) TCGA-D5-6540-01 12 93131235 93131235 G A PLEKHG7 5'UTR 0.33 TCGA-D5-6540-01 12 98941545 98941545 T - TMPO Frame_Shift_Del p.L318Cfs*13 0.28 TCGA-D5-6540-01 12 98992476 98992476 A - SLC25A3 Frame_Shift_Del p.A215Hfs*11 0.30 TCGA-D5-6540-01 12 99065435 99065435 T G APAF1 Nonsense_Mutation p.Y577* 0.37 TCGA-D5-6540-01 13 110435152 110435152 C A IRS2 Silent p.P1083P 0.50 TCGA-D5-6540-01 13 113715025 113715025 C T MCF2L Missense_Mutation p.P163L 0.50 deleterious(0) probably_damaging(0.95) TCGA-D5-6540-01 13 114507948 114507948 C T TMEM255B Missense_Mutation p.R254C 0.31 tolerated(0.4) benign(0.002) TCGA-D5-6540-01 13 21751398 21751398 C T MRP63 3'UTR 0.41 TCGA-D5-6540-01 13 24304457 24304457 C T MIPEP 3'UTR 0.27 TCGA-D5-6540-01 13 31735708 31735708 C A HSPH1 Silent p.V4V 0.29 TCGA-D5-6540-01 13 33344489 33344489 A - PDS5B Frame_Shift_Del p.K1287Rfs*22 0.20 TCGA-D5-6540-01 13 43362814 43362814 G T FAM216B Missense_Mutation p.R103I 0.28 deleterious(0) possibly_damaging(0.684) TCGA-D5-6540-01 13 46287582 46287582 G A SPERT Missense_Mutation p.R141H 0.38 tolerated(0.08) probably_damaging(0.969) TCGA-D5-6540-01 13 46716466 46716466 C T LCP1 Missense_Mutation p.R488H 0.38 tolerated(0.16) benign(0.008) TCGA-D5-6540-01 13 47011838 47011838 C T PPP1R2P4 RNA 0.10 TCGA-D5-6540-01 13 51825914 51825914 C T FAM124A Silent p.H173H 0.44 TCGA-D5-6540-01 13 53313175 53313175 G A LECT1 Silent p.S68S 0.40 TCGA-D5-6540-01 13 53419059 53419059 G A PCDH8 Missense_Mutation p.A950V 0.24 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 13 58208511 58208511 C T PCDH17 Missense_Mutation p.R611C 0.41 deleterious(0.02) possibly_damaging(0.893) TCGA-D5-6540-01 13 67802269 67802269 A G PCDH9 Missense_Mutation p.S102P 0.32 tolerated(0.21) benign(0.021) TCGA-D5-6540-01 13 77642789 77642789 C T MYCBP2 Missense_Mutation p.V3990I 0.41 probably_damaging(0.93) TCGA-D5-6540-01 13 79176543 79176543 C T POU4F1 Silent p.P89P 0.38 TCGA-D5-6540-01 13 95131528 95131529 - CT DCT 5'UTR 0.39 TCGA-D5-6540-01 13 95279495 95279495 T - GPR180 3'UTR 0.29 TCGA-D5-6540-01 13 99534154 99534154 G A DOCK9 Silent p.N889N 0.38 TCGA-D5-6540-01 14 100118623 100118623 G A HHIPL1 Silent p.T106T 0.40 TCGA-D5-6540-01 14 100835431 100835431 G A WARS Missense_Mutation p.A31V 0.15 tolerated_low_confidence(0.08) benign(0.091) TCGA-D5-6540-01 14 101198422 101198422 C A DLK1 Silent p.T102T 0.35 TCGA-D5-6540-01 14 102510295 102510295 G - DYNC1H1 Frame_Shift_Del p.W4201Gfs*43 0.32 TCGA-D5-6540-01 14 102798054 102798054 C T ZNF839 Silent p.R429R 0.25 TCGA-D5-6540-01 14 102900663 102900663 C G TECPR2 Missense_Mutation p.D503E 0.42 tolerated(0.12) benign(0.115) TCGA-D5-6540-01 14 103436552 103436552 C T CDC42BPB Missense_Mutation p.R644H 0.56 deleterious(0.01) benign(0.046) TCGA-D5-6540-01 14 103592875 103592877 GAA - TNFAIP2 In_Frame_Del p.K31del 0.32 TCGA-D5-6540-01 14 104642925 104642925 C - KIF26A Frame_Shift_Del p.R1269Gfs*7 0.33 TCGA-D5-6540-01 14 105167738 105167738 A G INF2 Silent p.A12A 0.39 TCGA-D5-6540-01 14 106641629 106641629 C T IGHV1-18 Silent p.T95T 0.42 TCGA-D5-6540-01 14 106757860 106757860 G T IGHV2-26 Missense_Mutation p.S49R 0.39 deleterious(0.01) benign(0.088) TCGA-D5-6540-01 14 20248807 20248807 C A OR4M1 Missense_Mutation p.A109D 0.04 deleterious(0.01) possibly_damaging(0.856) TCGA-D5-6540-01 14 21162221 21162221 C A ANG 3'UTR 0.40 TCGA-D5-6540-01 14 21216326 21216326 G A EDDM3A 3'UTR 0.09 TCGA-D5-6540-01 14 23243301 23243301 A C SLC7A7 Missense_Mutation p.F424V 0.30 deleterious(0) probably_damaging(0.955) TCGA-D5-6540-01 14 23513161 23513161 T C PSMB11 3'UTR 0.38 TCGA-D5-6540-01 14 23854146 23854148 CTT - MYH6 In_Frame_Del p.K1756del 0.35 TCGA-D5-6540-01 14 23886748 23886748 A T MYH7 Silent p.A1439A 0.34 TCGA-D5-6540-01 14 23889158 23889158 C T MYH7 Missense_Mutation p.D1208N 0.28 deleterious(0.01) possibly_damaging(0.753) TCGA-D5-6540-01 14 24027955 24027955 G A THTPA Missense_Mutation p.R200H 0.35 deleterious(0.03) benign(0.019) TCGA-D5-6540-01 14 24552036 24552036 G - NRL Frame_Shift_Del p.L8Wfs*11 0.18 TCGA-D5-6540-01 14 24709942 24709942 C T TINF2 Silent p.T248T 0.36 TCGA-D5-6540-01 14 24799466 24799466 G A ADCY4 Silent p.D322D 0.32 TCGA-D5-6540-01 14 25077567 25077567 G A GZMH Missense_Mutation p.A36V 0.32 deleterious(0.04) possibly_damaging(0.675) TCGA-D5-6540-01 14 27066542 27066542 G - NOVA1 Frame_Shift_Del p.P34Lfs*19 0.37 TCGA-D5-6540-01 14 31097455 31097456 - A SCFD1 Frame_Shift_Ins p.N36Kfs*14 0.20 TCGA-D5-6540-01 14 33015029 33015029 A - AKAP6 Frame_Shift_Del p.R392Efs*14 0.20 TCGA-D5-6540-01 14 33291632 33291632 G A AKAP6 Missense_Mutation p.R1538H 0.35 tolerated_low_confidence(0.24) benign(0.002) TCGA-D5-6540-01 14 39745995 39745995 A - CTAGE5 Intron 0.34 TCGA-D5-6540-01 14 45373730 45373730 C T C14orf28 Silent p.H249H 0.35 TCGA-D5-6540-01 14 45431713 45431713 C - FAM179B Frame_Shift_Del p.P31Qfs*12 0.24 TCGA-D5-6540-01 14 45623987 45623987 G A FANCM Missense_Mutation p.R424H 0.33 tolerated(0.5) benign(0.004) TCGA-D5-6540-01 14 45679661 45679661 G A MIS18BP1 Missense_Mutation p.P1025L 0.38 deleterious(0) probably_damaging(0.994) TCGA-D5-6540-01 14 50131391 50131391 T C POLE2 Missense_Mutation p.Q212R 0.17 tolerated(0.53) benign(0.067) TCGA-D5-6540-01 14 51259463 51259463 C T NIN Silent p.R134R 0.37 TCGA-D5-6540-01 14 56079169 56079169 G A KTN1 Missense_Mutation p.A135T 0.29 tolerated(0.89) benign(0.002) TCGA-D5-6540-01 14 57271049 57271049 G - OTX2 Frame_Shift_Del p.R44Gfs*15 0.28 TCGA-D5-6540-01 14 59114766 59114766 G A DACT1 3'Flank 0.39 TCGA-D5-6540-01 14 61115785 61115785 G A SIX1 Silent p.D41D 0.35 TCGA-D5-6540-01 14 62016617 62016617 T G PRKCH 3'UTR 0.21 TCGA-D5-6540-01 14 65241205 65241205 C A SPTB Missense_Mutation p.R1628L 0.43 tolerated(0.31) benign(0.036) TCGA-D5-6540-01 14 68252693 68252693 A G ZFYVE26 Silent p.T1062T 0.30 TCGA-D5-6540-01 14 70263867 70263867 C A SLC10A1 Missense_Mutation p.E2D 0.10 tolerated_low_confidence(0.06) benign(0.006) TCGA-D5-6540-01 14 70713359 70713359 G A ADAM21P1 RNA 0.13 TCGA-D5-6540-01 14 70925235 70925235 C T ADAM21 Missense_Mutation p.A340V 0.37 deleterious(0) possibly_damaging(0.612) TCGA-D5-6540-01 14 73721238 73721238 C T PAPLN Silent p.G413G 0.12 TCGA-D5-6540-01 14 73989717 73989717 G A HEATR4 Missense_Mutation p.P47L 0.38 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 14 74727457 74727457 G A VSX2 Silent p.A307A 0.32 TCGA-D5-6540-01 14 75016599 75016599 C - LTBP2 Frame_Shift_Del p.V586* 0.27 TCGA-D5-6540-01 14 75264719 75264719 C T YLPM1 Nonsense_Mutation p.Q907* 0.36 TCGA-D5-6540-01 14 75537302 75537302 C G ZC2HC1C Nonsense_Mutation p.S9* 0.36 TCGA-D5-6540-01 14 77229377 77229377 G T VASH1 Missense_Mutation p.E71D 0.38 tolerated(0.43) probably_damaging(0.971) TCGA-D5-6540-01 14 77715650 77715650 C T TMEM63C Silent p.C629C 0.48 TCGA-D5-6540-01 14 77941912 77941912 G A ISM2 3'UTR 0.36 TCGA-D5-6540-01 14 81646552 81646552 A - GTF2A1 3'UTR 0.26 TCGA-D5-6540-01 14 81743649 81743649 G A STON2 Missense_Mutation p.A669V 0.36 deleterious(0) probably_damaging(0.996) TCGA-D5-6540-01 14 81864689 81864689 G A STON2 Missense_Mutation p.S13L 0.38 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-D5-6540-01 14 86089556 86089556 G A FLRT2 Missense_Mutation p.M566I 0.30 tolerated(0.09) benign(0.105) TCGA-D5-6540-01 14 90420983 90420983 C T EFCAB11 Missense_Mutation p.A8T 0.17 tolerated_low_confidence(0.07) benign(0.004) TCGA-D5-6540-01 14 91925188 91925188 T C SMEK1 Missense_Mutation p.Y793C 0.09 deleterious(0) probably_damaging(0.993) TCGA-D5-6540-01 14 94395249 94395249 C T FAM181A Silent p.G268G 0.35 TCGA-D5-6540-01 15 100252748 100252748 G A MEF2A Silent p.P424P 0.50 TCGA-D5-6540-01 15 100533367 100533367 G A ADAMTS17 Silent p.T945T 0.37 TCGA-D5-6540-01 15 101454915 101454915 C T ALDH1A3 Silent p.Y492Y 0.10 TCGA-D5-6540-01 15 101862755 101862755 T C PCSK6 Missense_Mutation p.E811G 0.29 deleterious(0.03) benign(0.185) TCGA-D5-6540-01 15 20644026 20644026 C - HERC2P3 RNA 0.19 TCGA-D5-6540-01 15 20663143 20663143 C T HERC2P3 RNA 0.22 TCGA-D5-6540-01 15 22742792 22742792 C T GOLGA6L1 Missense_Mutation p.R393W 0.40 unknown(0) TCGA-D5-6540-01 15 25940254 25940254 C T ATP10A Missense_Mutation p.V934M 0.42 deleterious(0.04) benign(0.223) TCGA-D5-6540-01 15 27017588 27017588 G A GABRB3 Silent p.I67I 0.32 TCGA-D5-6540-01 15 28202804 28202804 G A OCA2 Missense_Mutation p.R572C 0.38 deleterious(0) probably_damaging(0.953) TCGA-D5-6540-01 15 28422177 28422177 G A HERC2 Silent p.S3117S 0.34 TCGA-D5-6540-01 15 31325028 31325028 C T TRPM1 Missense_Mutation p.R956H 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 15 34628976 34628976 A - SLC12A6 Intron 0.26 TCGA-D5-6540-01 15 34654500 34654500 C A LPCAT4 Nonsense_Mutation p.E303* 0.29 TCGA-D5-6540-01 15 37110113 37110113 G A CSNK1A1P1 RNA 0.21 TCGA-D5-6540-01 15 39883455 39883455 C T THBS1 Missense_Mutation p.R773C 0.27 deleterious(0.03) probably_damaging(0.961) TCGA-D5-6540-01 15 40863818 40863818 C T RPUSD2 Missense_Mutation p.R208W 0.15 deleterious(0) probably_damaging(0.972) TCGA-D5-6540-01 15 40915672 40915672 A - CASC5 Frame_Shift_Del p.N1098Mfs*25 0.29 TCGA-D5-6540-01 15 42041548 42041548 A - MGA Frame_Shift_Del p.T1916Qfs*7 0.29 TCGA-D5-6540-01 15 42820500 42820501 - G SNAP23 Frame_Shift_Ins p.D105Rfs*13 0.34 TCGA-D5-6540-01 15 43585796 43585796 T G TGM7 Missense_Mutation p.Q15P 0.28 deleterious(0) possibly_damaging(0.878) TCGA-D5-6540-01 15 43658353 43658353 G - ZSCAN29 Frame_Shift_Del p.Q393Rfs*102 0.19 TCGA-D5-6540-01 15 48053221 48053221 G T SEMA6D Missense_Mutation p.V90L 0.10 deleterious(0.03) benign(0.03) TCGA-D5-6540-01 15 49034267 49034267 T G CEP152 Missense_Mutation p.K1289T 0.35 deleterious(0) probably_damaging(0.946) TCGA-D5-6540-01 15 49293295 49293295 C A SECISBP2L Splice_Site p.X676_splice 0.41 TCGA-D5-6540-01 15 50773954 50773954 C T USP8 Nonsense_Mutation p.Q499* 0.40 TCGA-D5-6540-01 15 52536602 52536602 G A MYO5C Nonsense_Mutation p.R781* 0.38 TCGA-D5-6540-01 15 52609388 52609388 G A MYO5A Missense_Mutation p.R1731C 0.36 deleterious(0) probably_damaging(0.93) TCGA-D5-6540-01 15 58467216 58467216 C T AQP9 Missense_Mutation p.A159V 0.38 tolerated(0.73) benign(0.001) TCGA-D5-6540-01 15 65489056 65489056 A C CILP 3'UTR 0.20 TCGA-D5-6540-01 15 68596150 68596150 C - ITGA11 Frame_Shift_Del p.G1152Afs*46 0.37 TCGA-D5-6540-01 15 69682020 69682020 C T PAQR5 Missense_Mutation p.T138M 0.37 tolerated(0.05) possibly_damaging(0.696) TCGA-D5-6540-01 15 72039370 72039370 G A THSD4 Missense_Mutation p.D744N 0.09 tolerated(0.26) benign(0.064) TCGA-D5-6540-01 15 72057470 72057470 C - THSD4 Frame_Shift_Del p.S903Afs*42 0.35 TCGA-D5-6540-01 15 73409148 73409148 T C NEO1 Missense_Mutation p.V133A 0.15 deleterious(0.02) benign(0.259) TCGA-D5-6540-01 15 73615441 73615441 G - HCN4 Frame_Shift_Del p.P998Hfs*20 0.30 TCGA-D5-6540-01 15 74276361 74276361 C - STOML1 Frame_Shift_Del p.A372Pfs*3 0.29 TCGA-D5-6540-01 15 74281092 74281092 G A STOML1 Missense_Mutation p.R148C 0.39 deleterious(0.03) benign(0.063) TCGA-D5-6540-01 15 74468331 74468331 C T ISLR Missense_Mutation p.P378S 0.42 tolerated(0.07) probably_damaging(0.996) TCGA-D5-6540-01 15 74703141 74703141 C T SEMA7A Missense_Mutation p.G609S 0.31 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 15 74963941 74963941 G A EDC3 Silent p.A113A 0.40 TCGA-D5-6540-01 15 75558448 75558448 G A GOLGA6C Missense_Mutation p.E284K 0.11 tolerated(0.17) benign(0.004) TCGA-D5-6540-01 15 77324684 77324684 G A PSTPIP1 Missense_Mutation p.A263T 0.44 tolerated(0.68) benign(0.001) TCGA-D5-6540-01 15 79045558 79045558 G A RP11-160C18.4 RNA 0.30 TCGA-D5-6540-01 15 79585584 79585584 T - ANKRD34C Intron 0.08 TCGA-D5-6540-01 15 83215978 83215978 C T CPEB1 Missense_Mutation p.R470H 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 15 83502067 83502067 G A WHAMM Missense_Mutation p.A737T 0.32 tolerated(0.68) benign(0.007) TCGA-D5-6540-01 15 83518616 83518616 G A HOMER2 Missense_Mutation p.R306C 0.08 deleterious(0) possibly_damaging(0.858) TCGA-D5-6540-01 15 83805582 83805582 T - TM6SF1 3'UTR 0.33 TCGA-D5-6540-01 15 85345133 85345133 G A ZNF592 Missense_Mutation p.A1105T 0.28 tolerated(0.5) benign(0.012) TCGA-D5-6540-01 15 89744315 89744315 A - ABHD2 3'UTR 0.22 TCGA-D5-6540-01 15 90610448 90610448 C T ZNF710 Silent p.L27L 0.43 TCGA-D5-6540-01 15 90771739 90771740 - C SEMA4B Frame_Shift_Ins p.S797Vfs*6 0.27 TCGA-D5-6540-01 15 90815011 90815011 C T NGRN Silent p.Y289Y 0.09 TCGA-D5-6540-01 15 91434848 91434848 G A FES Missense_Mutation p.S532N 0.39 tolerated(0.41) benign(0) TCGA-D5-6540-01 15 99740151 99740151 G A TTC23 Silent p.H244H 0.34 TCGA-D5-6540-01 16 1004507 1004507 T C LMF1 Missense_Mutation p.D118G 0.34 tolerated(0.06) probably_damaging(0.971) TCGA-D5-6540-01 16 12162916 12162917 - C SNX29 Frame_Shift_Ins p.L418Pfs*51 0.35 TCGA-D5-6540-01 16 12618656 12618656 G T SNX29 Missense_Mutation p.S759I 0.29 tolerated(0.07) benign(0.165) TCGA-D5-6540-01 16 15131990 15131990 T - NTAN1 Frame_Shift_Del p.K277Nfs*83 0.29 TCGA-D5-6540-01 16 1560826 1560826 G A IFT140 3'UTR 0.35 TCGA-D5-6540-01 16 15692828 15692828 C T KIAA0430 Missense_Mutation p.D1623N 0.33 deleterious(0.01) possibly_damaging(0.671) TCGA-D5-6540-01 16 16142037 16142037 G A ABCC1 Silent p.T419T 0.35 TCGA-D5-6540-01 16 1817604 1817604 C T MAPK8IP3 Missense_Mutation p.R1092W 0.34 deleterious(0) probably_damaging(0.986) TCGA-D5-6540-01 16 1841496 1841496 C T IGFALS Missense_Mutation p.R346H 0.33 tolerated(0.09) benign(0.081) TCGA-D5-6540-01 16 1867186 1867186 G A HAGH Missense_Mutation p.R210W 0.45 deleterious(0.04) possibly_damaging(0.783) TCGA-D5-6540-01 16 18893511 18893511 T C SMG1 Silent p.P423P 0.30 TCGA-D5-6540-01 16 19554266 19554266 C T CCP110 Missense_Mutation p.R812C 0.33 deleterious(0) probably_damaging(0.994) TCGA-D5-6540-01 16 19619556 19619556 T G C16orf62 Missense_Mutation p.F370V 0.11 deleterious(0) possibly_damaging(0.849) TCGA-D5-6540-01 16 1990820 1990820 C T MSRB1 Missense_Mutation p.R93Q 0.14 deleterious(0) probably_damaging(0.949) TCGA-D5-6540-01 16 2011234 2011234 T C NDUFB10 Missense_Mutation p.C71R 0.33 deleterious(0.03) benign(0.008) TCGA-D5-6540-01 16 2011574 2011576 CAG - NDUFB10 In_Frame_Del p.Q117del 0.26 TCGA-D5-6540-01 16 20352636 20352636 C T UMOD Missense_Mutation p.G452R 0.43 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 16 20360287 20360287 G A UMOD Silent p.C112C 0.42 TCGA-D5-6540-01 16 2043016 2043016 G A SYNGR3 Silent p.P211P 0.35 TCGA-D5-6540-01 16 2143886 2143886 C T PKD1 Missense_Mutation p.G3583S 0.47 benign(0.001) TCGA-D5-6540-01 16 2230590 2230590 C T CASKIN1 Missense_Mutation p.D927N 0.38 probably_damaging(0.999) TCGA-D5-6540-01 16 2546446 2546446 G A RP11-20I23.1 Silent p.T99T 0.28 TCGA-D5-6540-01 16 27556783 27556783 C A GTF3C1 Nonsense_Mutation p.E95* 0.36 TCGA-D5-6540-01 16 2817980 2817980 C T SRRM2 Missense_Mutation p.T2484M 0.40 benign(0.215) TCGA-D5-6540-01 16 2867861 2867861 G A PRSS21 Missense_Mutation p.G51R 0.34 deleterious(0.02) probably_damaging(0.987) TCGA-D5-6540-01 16 2882232 2882232 C T ZG16B 3'UTR 0.33 TCGA-D5-6540-01 16 28931168 28931168 C T RABEP2 Missense_Mutation p.R124H 0.38 tolerated(0.29) benign(0.36) TCGA-D5-6540-01 16 2987126 2987126 C - FLYWCH1 Frame_Shift_Del p.E507Sfs*3 0.35 TCGA-D5-6540-01 16 29998537 29998537 G - TAOK2 Frame_Shift_Del p.G983Vfs*50 0.35 TCGA-D5-6540-01 16 30002761 30002761 C T TAOK2 3'Flank 0.49 TCGA-D5-6540-01 16 3016744 3016744 C T KREMEN2 Silent p.F196F 0.34 TCGA-D5-6540-01 16 30393918 30393918 G A SEPT1 Silent p.A24A 0.36 TCGA-D5-6540-01 16 30522245 30522245 G - ITGAL Frame_Shift_Del p.D890Tfs*9 0.10 TCGA-D5-6540-01 16 30535974 30535974 C T ZNF768 Missense_Mutation p.R496H 0.48 deleterious_low_confidence(0.04) probably_damaging(0.966) TCGA-D5-6540-01 16 30594369 30594369 C T ZNF785 Missense_Mutation p.A244T 0.52 tolerated(1) probably_damaging(0.989) TCGA-D5-6540-01 16 30594477 30594477 G A ZNF785 Missense_Mutation p.R208C 0.42 tolerated(0.2) benign(0.004) TCGA-D5-6540-01 16 30783289 30783289 G A RNF40 Missense_Mutation p.A908T 0.15 deleterious(0.05) possibly_damaging(0.54) TCGA-D5-6540-01 16 30794459 30794459 G A ZNF629 Missense_Mutation p.T397M 0.33 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 16 30982721 30982721 G A SETD1A Silent p.S1013S 0.38 TCGA-D5-6540-01 16 31098017 31098017 C T PRSS53 Missense_Mutation p.A149T 0.36 tolerated(0.75) benign(0.006) TCGA-D5-6540-01 16 31393302 31393302 C T ITGAX 3'UTR 0.31 TCGA-D5-6540-01 16 32894154 32894154 C T RP11-989E6.3 5'Flank 0.30 TCGA-D5-6540-01 16 333196 333196 G A PDIA2 Silent p.L9L 0.38 TCGA-D5-6540-01 16 3598688 3598688 C T NLRC3 Missense_Mutation p.R936H 0.24 tolerated(0.7) benign(0.004) TCGA-D5-6540-01 16 3613213 3613213 C T NLRC3 Silent p.Q622Q 0.12 TCGA-D5-6540-01 16 3614341 3614341 C T NLRC3 Silent p.P246P 0.33 TCGA-D5-6540-01 16 3656526 3656526 G A SLX4 Missense_Mutation p.R237W 0.39 deleterious(0.03) benign(0.015) TCGA-D5-6540-01 16 3712793 3712793 C A DNASE1 3'Flank 0.35 TCGA-D5-6540-01 16 3807926 3807926 A G CREBBP Missense_Mutation p.W1165R 0.35 unknown(0) TCGA-D5-6540-01 16 4387495 4387495 G A GLIS2 Silent p.S515S 0.41 TCGA-D5-6540-01 16 48210877 48210877 G T ABCC11 Missense_Mutation p.R1166S 0.31 deleterious(0.02) benign(0.07) TCGA-D5-6540-01 16 52473351 52473351 A G TOX3 Missense_Mutation p.L506P 0.31 deleterious_low_confidence(0) unknown(0) TCGA-D5-6540-01 16 553007 553007 C T RAB11FIP3 Silent p.Y435Y 0.39 TCGA-D5-6540-01 16 56519569 56519569 A G BBS2 Silent p.N664N 0.33 TCGA-D5-6540-01 16 57003565 57003565 C A CETP Silent p.A137A 0.40 TCGA-D5-6540-01 16 57060259 57060259 G A NLRC5 Silent p.L468L 0.31 TCGA-D5-6540-01 16 57093394 57093394 G T NLRC5 Missense_Mutation p.Q1312H 0.30 deleterious(0.04) benign(0.013) TCGA-D5-6540-01 16 57188114 57188114 T - FAM192A 3'UTR 0.43 TCGA-D5-6540-01 16 57596370 57596370 C T GPR114 Missense_Mutation p.R47C 0.21 deleterious(0.05) benign(0.394) TCGA-D5-6540-01 16 58019358 58019358 G A TEPP Silent p.P247P 0.27 TCGA-D5-6540-01 16 58030855 58030855 G A ZNF319 Missense_Mutation p.R439C 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-D5-6540-01 16 58075649 58075649 C T MMP15 Missense_Mutation p.P347S 0.40 deleterious(0.01) benign(0.009) TCGA-D5-6540-01 16 61823332 61823332 G A CDH8 Silent p.D444D 0.41 TCGA-D5-6540-01 16 67862087 67862087 G - CENPT 3'UTR 0.35 TCGA-D5-6540-01 16 67916427 67916427 G T EDC4 Silent p.P1124P 0.37 TCGA-D5-6540-01 16 67979752 67979752 T C SLC12A4 Missense_Mutation p.Y923C 0.29 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 16 68057103 68057103 C T DDX28 Translation_Start_Site p.M1? 0.37 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-D5-6540-01 16 68215384 68215384 G A NFATC3 Missense_Mutation p.R641Q 0.33 tolerated(0.28) benign(0.076) TCGA-D5-6540-01 16 69776394 69776394 G A NOB1 Silent p.N360N 0.41 TCGA-D5-6540-01 16 70162732 70162732 G A PDPR Missense_Mutation p.R136Q 0.26 deleterious(0) probably_damaging(0.96) TCGA-D5-6540-01 16 70867804 70867804 G A HYDIN Silent p.G4555G 0.35 TCGA-D5-6540-01 16 709106 709106 C - WDR90 Frame_Shift_Del p.P1013Qfs*98 0.36 TCGA-D5-6540-01 16 721872 721872 G A RHOT2 Missense_Mutation p.A323T 0.40 deleterious(0.02) benign(0.409) TCGA-D5-6540-01 16 731539 731539 C T STUB1 Missense_Mutation p.R154C 0.30 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 16 74525065 74525065 C T GLG1 Missense_Mutation p.R428H 0.09 deleterious(0) possibly_damaging(0.55) TCGA-D5-6540-01 16 75146578 75146578 A G LDHD Missense_Mutation p.F427S 0.28 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 16 767142 767142 G A METRN Missense_Mutation p.A213T 0.09 tolerated(0.77) benign(0.016) TCGA-D5-6540-01 16 79628549 79628549 T A MAF Intron 0.41 TCGA-D5-6540-01 16 81015461 81015462 - A CMC2 Frame_Shift_Ins p.G35Wfs*4 0.29 TCGA-D5-6540-01 16 82033148 82033148 C T SDR42E1 Silent p.Q250Q 0.39 TCGA-D5-6540-01 16 830461 830461 A C MSLNL Silent p.A180A 0.36 TCGA-D5-6540-01 16 87636847 87636847 G A JPH3 Missense_Mutation p.G32D 0.32 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 16 88497681 88497681 C A ZNF469 Missense_Mutation p.P1240Q 0.19 benign(0.028) TCGA-D5-6540-01 16 88878266 88878266 G A APRT Silent p.R14R 0.57 TCGA-D5-6540-01 16 89778516 89778517 AG - VPS9D1 Intron 0.29 TCGA-D5-6540-01 17 12799767 12799767 C T ARHGAP44 Missense_Mutation p.T46M 0.37 deleterious(0.04) benign(0.305) TCGA-D5-6540-01 17 14140020 14140020 C T CDRT15 Missense_Mutation p.R44H 0.37 tolerated_low_confidence(0.17) benign(0.003) TCGA-D5-6540-01 17 15508543 15508543 C G RP11-385D13.1 Missense_Mutation p.S786T 0.33 tolerated_low_confidence(0.06) probably_damaging(0.953) TCGA-D5-6540-01 17 16004983 16004983 C T NCOR1 Silent p.T757T 0.41 TCGA-D5-6540-01 17 16024505 16024505 C - NCOR1 Frame_Shift_Del p.R572Efs*18 0.09 TCGA-D5-6540-01 17 16285785 16285785 C - UBB Frame_Shift_Del p.D191Tfs*35 0.30 TCGA-D5-6540-01 17 16327062 16327062 C T TRPV2 Missense_Mutation p.A302V 0.40 deleterious(0.03) possibly_damaging(0.897) TCGA-D5-6540-01 17 17723486 17723486 C A SREBF1 Missense_Mutation p.Q177H 0.46 deleterious(0.05) possibly_damaging(0.739) TCGA-D5-6540-01 17 17942220 17942220 T G ATPAF2 Silent p.P36P 0.36 TCGA-D5-6540-01 17 18025336 18025336 A C MYO15A Silent p.T1074T 0.53 TCGA-D5-6540-01 17 18647524 18647524 C T FBXW10 5'UTR 0.35 TCGA-D5-6540-01 17 1946247 1946247 C T OVCA2 Missense_Mutation p.T178I 0.39 deleterious(0.01) possibly_damaging(0.798) TCGA-D5-6540-01 17 1961239 1961239 G A HIC1 Missense_Mutation p.V438M 0.31 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 17 21320103 21320103 G A KCNJ12 3'UTR 0.07 TCGA-D5-6540-01 17 26096089 26096089 C - NOS2 Frame_Shift_Del p.A650Pfs*53 0.18 TCGA-D5-6540-01 17 26962001 26962001 A G KIAA0100 Silent p.P868P 0.47 TCGA-D5-6540-01 17 27287879 27287879 C A SEZ6 Missense_Mutation p.E451D 0.37 deleterious(0.05) benign(0.012) TCGA-D5-6540-01 17 27857572 27857572 C T TAOK1 Missense_Mutation p.R766W 0.38 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 17 2966903 2966903 C A OR1D5 5'Flank 0.12 TCGA-D5-6540-01 17 32598725 32598725 C A CCL7 Silent p.T68T 0.37 TCGA-D5-6540-01 17 3336822 3336824 AAG - OR1E2 In_Frame_Del p.F104del 0.11 TCGA-D5-6540-01 17 34171886 34171886 G - TAF15 Frame_Shift_Del p.G530Afs*116 0.33 TCGA-D5-6540-01 17 34205639 34205639 G T CCL5 Silent p.S27S 0.33 TCGA-D5-6540-01 17 34851179 34851179 G T ZNHIT3 Missense_Mutation p.E133D 0.30 deleterious(0) probably_damaging(0.996) TCGA-D5-6540-01 17 3638182 3638182 C T ITGAE Missense_Mutation p.G862R 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 17 36891728 36891730 GTC - PCGF2 In_Frame_Del p.D261del 0.29 TCGA-D5-6540-01 17 37580062 37580065 GAAG - MED1 Frame_Shift_Del p.F288Pfs*17 0.29 TCGA-D5-6540-01 17 37826284 37826284 C A PNMT Missense_Mutation p.P164H 0.32 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 17 38567951 38567951 C T TOP2A Missense_Mutation p.M303I 0.07 tolerated(0.21) benign(0.005) TCGA-D5-6540-01 17 3926055 3926055 T - ZZEF1 Frame_Shift_Del p.K2387Sfs*40 0.30 TCGA-D5-6540-01 17 39766747 39766747 C T KRT16 Silent p.L372L 0.34 TCGA-D5-6540-01 17 40331009 40331009 G A KCNH4 Missense_Mutation p.R38W 0.40 deleterious(0.01) possibly_damaging(0.67) TCGA-D5-6540-01 17 40337464 40337464 A G HCRT 5'UTR 0.09 TCGA-D5-6540-01 17 40820242 40820244 GGA - PLEKHH3 In_Frame_Del p.P762del 0.50 TCGA-D5-6540-01 17 41925992 41925992 G T CD300LG Missense_Mutation p.C37F 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 17 42091847 42091847 C T TMEM101 Missense_Mutation p.A66T 0.35 deleterious(0.01) probably_damaging(0.913) TCGA-D5-6540-01 17 42981993 42981993 C T FAM187A Missense_Mutation p.R266W 0.45 deleterious(0.01) possibly_damaging(0.614) TCGA-D5-6540-01 17 4337231 4337231 C T SPNS3 5'UTR 0.34 TCGA-D5-6540-01 17 43515271 43515271 G - PLEKHM1 Frame_Shift_Del p.R1042Afs*24 0.26 TCGA-D5-6540-01 17 43923692 43923692 G A SPPL2C Missense_Mutation p.V474M 0.34 tolerated(0.21) benign(0.076) TCGA-D5-6540-01 17 44101347 44101347 G A MAPT Missense_Mutation p.R714H 0.27 deleterious(0.01) possibly_damaging(0.889) TCGA-D5-6540-01 17 44249491 44249491 C T KANSL1 Missense_Mutation p.A7T 0.17 deleterious(0) unknown(0) TCGA-D5-6540-01 17 44626363 44626363 G T LRRC37A2 Missense_Mutation p.K1286N 0.23 tolerated(1) probably_damaging(0.966) TCGA-D5-6540-01 17 4500594 4500594 T G SMTNL2 Missense_Mutation p.F412C 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 17 45916170 45916170 C T SCRN2 Silent p.L253L 0.24 TCGA-D5-6540-01 17 45993838 45993838 C T SP2 Missense_Mutation p.A134V 0.42 tolerated(1) benign(0.005) TCGA-D5-6540-01 17 46865293 46865293 C T TTLL6 Missense_Mutation p.C490Y 0.30 tolerated(0.37) benign(0.359) TCGA-D5-6540-01 17 46878913 46878913 G A TTLL6 Missense_Mutation p.R152W 0.27 deleterious(0) probably_damaging(0.996) TCGA-D5-6540-01 17 47115784 47115784 G A IGF2BP1 Missense_Mutation p.R219H 0.15 deleterious(0.04) benign(0.344) TCGA-D5-6540-01 17 47122409 47122409 G A IGF2BP1 Silent p.P459P 0.11 TCGA-D5-6540-01 17 48050488 48050488 C - DLX4 Frame_Shift_Del p.A114Pfs*19 0.39 TCGA-D5-6540-01 17 48460289 48460289 A G LRRC59 3'UTR 0.38 TCGA-D5-6540-01 17 48602276 48602276 C T MYCBPAP Silent p.R601R 0.35 TCGA-D5-6540-01 17 5041492 5041492 C T USP6 Silent p.N334N 0.35 TCGA-D5-6540-01 17 53155456 53155456 A - STXBP4 Frame_Shift_Del p.K404Rfs*31 0.09 TCGA-D5-6540-01 17 56437605 56437605 C T RNF43 Missense_Mutation p.R286Q 0.38 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 17 56833567 56833567 C T PPM1E Missense_Mutation p.A70V 0.38 tolerated_low_confidence(0.36) unknown(0) TCGA-D5-6540-01 17 56833619 56833619 C T PPM1E Silent p.P87P 0.36 TCGA-D5-6540-01 17 60769878 60769878 C - MRC2 3'UTR 0.55 TCGA-D5-6540-01 17 61897678 61897678 C A FTSJ3 Missense_Mutation p.W731C 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-D5-6540-01 17 62291475 62291475 C T TEX2 Missense_Mutation p.A35T 0.07 tolerated_low_confidence(1) benign(0.062) TCGA-D5-6540-01 17 62793442 62793442 T C PLEKHM1P RNA 0.32 TCGA-D5-6540-01 17 62864640 62864640 G A LRRC37A3 Missense_Mutation p.T998M 0.38 deleterious(0.03) possibly_damaging(0.505) TCGA-D5-6540-01 17 6387058 6387058 C T PITPNM3 Silent p.Q122Q 0.50 TCGA-D5-6540-01 17 64125862 64125862 A - CEP112 Splice_Site p.X214_splice 0.11 TCGA-D5-6540-01 17 64125862 64125862 A T CEP112 Splice_Site p.X214_splice 0.27 TCGA-D5-6540-01 17 64125863 64125863 C T CEP112 Splice_Site p.X214_splice 0.34 TCGA-D5-6540-01 17 7121904 7121904 G - DLG4 Frame_Shift_Del p.P25Hfs*57 0.35 TCGA-D5-6540-01 17 71334936 71334936 C T SDK2 Silent p.T2103T 0.38 TCGA-D5-6540-01 17 72832395 72832395 C T TMEM104 Missense_Mutation p.R354C 0.36 deleterious(0) benign(0.022) TCGA-D5-6540-01 17 72942999 72942999 C T OTOP3 Missense_Mutation p.A350V 0.38 tolerated(0.52) probably_damaging(0.977) TCGA-D5-6540-01 17 73494578 73494578 C T KIAA0195 Missense_Mutation p.S1231L 0.37 tolerated(1) benign(0.001) TCGA-D5-6540-01 17 7366908 7366908 G A ZBTB4 Missense_Mutation p.P465S 0.35 benign(0.021) TCGA-D5-6540-01 17 73753159 73753159 G A ITGB4 Missense_Mutation p.G1730D 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 17 74004271 74004271 C T EVPL Missense_Mutation p.S1672N 0.32 tolerated(0.72) benign(0.001) TCGA-D5-6540-01 17 7404318 7404318 G T POLR2A Silent p.T647T 0.34 TCGA-D5-6540-01 17 7496122 7496122 G - FXR2 Frame_Shift_Del p.P540Qfs*32 0.47 TCGA-D5-6540-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.37 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 17 76399752 76399752 C T PGS1 Silent p.S328S 0.42 TCGA-D5-6540-01 17 76445554 76445554 G A DNAH17 Missense_Mutation p.T3704M 0.33 possibly_damaging(0.794) TCGA-D5-6540-01 17 7752851 7752851 C T KDM6B Missense_Mutation p.P1082L 0.37 benign(0.064) TCGA-D5-6540-01 17 7758887 7758887 G A TMEM88 Missense_Mutation p.R112H 0.35 deleterious(0.01) probably_damaging(0.923) TCGA-D5-6540-01 17 7760701 7760701 C A LSMD1 Missense_Mutation p.G14V 0.39 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D5-6540-01 17 78073518 78073518 C A CCDC40 Missense_Mutation p.L1125M 0.37 deleterious(0.02) probably_damaging(0.927) TCGA-D5-6540-01 17 78078637 78078637 C - GAA Frame_Shift_Del p.N87Tfs*55 0.31 TCGA-D5-6540-01 17 78321725 78321725 A C RNF213 Missense_Mutation p.K3197T 0.41 benign(0.201) TCGA-D5-6540-01 17 79226324 79226324 G A SLC38A10 Missense_Mutation p.A539V 0.41 tolerated(0.39) benign(0.021) TCGA-D5-6540-01 17 79279492 79279493 - T LINC00482 RNA 0.30 TCGA-D5-6540-01 17 79422326 79422326 G A RP11-1055B8.7 Silent p.A1493A 0.26 TCGA-D5-6540-01 17 7950393 7950393 C T ALOX15B Missense_Mutation p.R486C 0.37 tolerated(0.09) benign(0.005) TCGA-D5-6540-01 17 79514548 79514548 C A C17orf70 Missense_Mutation p.Q520H 0.33 tolerated(0.09) benign(0.055) TCGA-D5-6540-01 17 79518178 79518178 G - C17orf70 Frame_Shift_Del p.V115* 0.33 TCGA-D5-6540-01 17 8221961 8221961 T - ARHGEF15 Frame_Shift_Del p.L618Rfs*24 0.23 TCGA-D5-6540-01 17 8280943 8280943 C T RPL26 Missense_Mutation p.R126H 0.18 tolerated(0.21) benign(0.002) TCGA-D5-6540-01 17 8358113 8358113 G A NDEL1 Splice_Site p.X234_splice 0.29 TCGA-D5-6540-01 17 8638811 8638811 G A CCDC42 Missense_Mutation p.A204V 0.36 tolerated(0.29) benign(0.336) TCGA-D5-6540-01 17 8701276 8701276 A T MFSD6L Missense_Mutation p.F388Y 0.38 deleterious(0) probably_damaging(0.983) TCGA-D5-6540-01 17 9086245 9086245 C T NTN1 Missense_Mutation p.A457V 0.19 tolerated(0.48) benign(0) TCGA-D5-6540-01 18 13612656 13612657 - G LDLRAD4 Intron 0.26 TCGA-D5-6540-01 18 19321667 19321667 C A MIB1 Missense_Mutation p.S41R 0.52 deleterious(0.01) benign(0.395) TCGA-D5-6540-01 18 25532234 25532234 C A CDH2 Silent p.G868G 0.34 TCGA-D5-6540-01 18 25570146 25570146 G A CDH2 Missense_Mutation p.R505C 0.29 deleterious(0) probably_damaging(0.93) TCGA-D5-6540-01 18 28588115 28588115 T - DSC3 Frame_Shift_Del p.K510Nfs*19 0.22 TCGA-D5-6540-01 18 28648970 28648970 C - DSC2 Frame_Shift_Del p.A800Lfs*56 0.23 TCGA-D5-6540-01 18 28669542 28669542 C T DSC2 Missense_Mutation p.A164T 0.19 deleterious(0.02) benign(0.303) TCGA-D5-6540-01 18 28980869 28980869 A G DSG4 Missense_Mutation p.S435G 0.10 tolerated(1) benign(0.167) TCGA-D5-6540-01 18 29052371 29052371 C A DSG3 Silent p.A674A 0.50 TCGA-D5-6540-01 18 29340251 29340251 G A SLC25A52 Missense_Mutation p.A135V 0.33 deleterious(0) possibly_damaging(0.897) TCGA-D5-6540-01 18 29788113 29788113 T - MEP1B Frame_Shift_Del p.F267Lfs*9 0.18 TCGA-D5-6540-01 18 30873148 30873148 T - CCDC178 Frame_Shift_Del p.N384Mfs*13 0.25 TCGA-D5-6540-01 18 3215076 3215076 C T MYOM1 Missense_Mutation p.R49H 0.52 tolerated_low_confidence(0.07) benign(0.264) TCGA-D5-6540-01 18 32374115 32374115 T - DTNA Frame_Shift_Del p.Y90Tfs*47 0.27 TCGA-D5-6540-01 18 32888087 32888090 AAAC - ZNF271 RNA 0.08 TCGA-D5-6540-01 18 42643238 42643238 C T SETBP1 Missense_Mutation p.R1456C 0.32 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 18 43329802 43329802 G A SLC14A1 Missense_Mutation p.M408I 0.11 tolerated(0.32) benign(0.002) TCGA-D5-6540-01 18 44561401 44561401 C T TCEB3B Missense_Mutation p.V79M 0.46 deleterious(0.02) probably_damaging(0.994) TCGA-D5-6540-01 18 47379970 47379970 T A MYO5B Missense_Mutation p.E1357V 0.42 deleterious(0.02) benign(0.018) TCGA-D5-6540-01 18 47753871 47753871 T C CCDC11 Silent p.A475A 0.27 TCGA-D5-6540-01 18 47800665 47800665 C T MBD1 Missense_Mutation p.R346Q 0.49 tolerated(0.14) probably_damaging(0.997) TCGA-D5-6540-01 18 50734133 50734133 C T DCC Missense_Mutation p.R603C 0.28 deleterious(0) probably_damaging(0.984) TCGA-D5-6540-01 18 51013219 51013219 A T DCC Silent p.G1263G 0.32 TCGA-D5-6540-01 18 54305733 54305733 C T TXNL1 5'UTR 0.40 TCGA-D5-6540-01 18 55322642 55322642 G A ATP8B1 Silent p.H905H 0.14 TCGA-D5-6540-01 18 61562617 61562617 G T SERPINB2 Missense_Mutation p.Q96H 0.13 tolerated(0.21) possibly_damaging(0.83) TCGA-D5-6540-01 18 63548024 63548024 T A CDH7 Missense_Mutation p.I751N 0.46 tolerated(0.43) benign(0.008) TCGA-D5-6540-01 18 7002309 7002309 C T LAMA1 Missense_Mutation p.A1446T 0.32 tolerated(0.34) benign(0.034) TCGA-D5-6540-01 18 70534641 70534641 G T NETO1 5'UTR 0.46 TCGA-D5-6540-01 18 72226668 72226668 G - CNDP1 Frame_Shift_Del p.A90Pfs*62 0.32 TCGA-D5-6540-01 18 74154045 74154045 G T ZNF516 Silent p.V322V 0.32 TCGA-D5-6540-01 18 77513685 77513685 C T CTDP1 Silent p.A927A 0.31 TCGA-D5-6540-01 18 77623869 77623869 G A KCNG2 Missense_Mutation p.E68K 0.30 deleterious(0) benign(0.409) TCGA-D5-6540-01 18 77659090 77659090 C T KCNG2 Silent p.C225C 0.35 TCGA-D5-6540-01 18 78005239 78005239 G A PARD6G 5'UTR 0.47 TCGA-D5-6540-01 18 8783876 8783876 G A SOGA2 Missense_Mutation p.A256T 0.11 tolerated(0.4) benign(0.003) TCGA-D5-6540-01 18 908273 908273 G A ADCYAP1 Missense_Mutation p.A84T 0.14 tolerated(0.27) benign(0.034) TCGA-D5-6540-01 18 9255369 9255369 A T ANKRD12 Nonsense_Mutation p.K702* 0.28 TCGA-D5-6540-01 19 10116619 10116619 C T COL5A3 Missense_Mutation p.R97Q 0.38 unknown(0) TCGA-D5-6540-01 19 10132392 10132392 C T RDH8 Silent p.C321C 0.26 TCGA-D5-6540-01 19 10202224 10202224 C - C19orf66 Frame_Shift_Del p.P189Rfs*67 0.28 TCGA-D5-6540-01 19 10224370 10224370 G - P2RY11 Frame_Shift_Del p.D29Tfs*52 0.32 TCGA-D5-6540-01 19 10286250 10286250 G A DNMT1 Missense_Mutation p.S205L 0.37 tolerated_low_confidence(0.3) benign(0.004) TCGA-D5-6540-01 19 10402955 10402955 G - ICAM5 Frame_Shift_Del p.G308Afs*10 0.38 TCGA-D5-6540-01 19 1053460 1053460 G A ABCA7 Missense_Mutation p.R1118Q 0.12 tolerated(0.36) benign(0.002) TCGA-D5-6540-01 19 10624719 10624719 G A S1PR5 Silent p.C323C 0.37 TCGA-D5-6540-01 19 1105428 1105428 T C GPX4 Silent p.T81T 0.48 TCGA-D5-6540-01 19 11594637 11594637 A G ZNF653 Missense_Mutation p.S570P 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 19 11597867 11597867 G A ZNF653 Silent p.D426D 0.33 TCGA-D5-6540-01 19 12089902 12089902 C T ZNF763 Missense_Mutation p.A391V 0.25 tolerated_low_confidence(0.26) possibly_damaging(0.695) TCGA-D5-6540-01 19 12429553 12429553 G A ZNF563 Missense_Mutation p.A429V 0.32 deleterious(0.04) probably_damaging(1) TCGA-D5-6540-01 19 12821556 12821556 G A TNPO2 Silent p.L383L 0.27 TCGA-D5-6540-01 19 12848473 12848473 A G ASNA1 Missense_Mutation p.T52A 0.24 deleterious(0.04) probably_damaging(0.992) TCGA-D5-6540-01 19 12875660 12875660 G A HOOK2 Nonsense_Mutation p.R599* 0.39 TCGA-D5-6540-01 19 12937659 12937659 G T RTBDN Missense_Mutation p.T163N 0.26 deleterious(0) probably_damaging(0.982) TCGA-D5-6540-01 19 12996205 12996205 G A KLF1 Missense_Mutation p.T280M 0.49 deleterious(0.01) probably_damaging(0.991) TCGA-D5-6540-01 19 13930222 13930222 T C ZSWIM4 Missense_Mutation p.M542T 0.09 deleterious(0) unknown(0) TCGA-D5-6540-01 19 14512528 14512528 G A CD97 Missense_Mutation p.R380H 0.41 deleterious(0.01) possibly_damaging(0.879) TCGA-D5-6540-01 19 14574904 14574904 C T PKN1 Missense_Mutation p.T563I 0.18 tolerated(0.19) benign(0.001) TCGA-D5-6540-01 19 1466993 1466993 G A APC2 Silent p.L1231L 0.39 TCGA-D5-6540-01 19 14876555 14876555 G A EMR2 Silent p.T232T 0.25 TCGA-D5-6540-01 19 15547744 15547744 G - WIZ Frame_Shift_Del p.S135Afs*15 0.30 TCGA-D5-6540-01 19 15568553 15568553 G A RASAL3 Silent p.R327R 0.22 TCGA-D5-6540-01 19 15580646 15580646 C T PGLYRP2 Missense_Mutation p.V480M 0.31 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 19 16212306 16212306 G A TPM4 3'UTR 0.12 TCGA-D5-6540-01 19 16678867 16678867 C T SLC35E1 Silent p.S202S 0.44 TCGA-D5-6540-01 19 16965102 16965102 G - SIN3B Intron 0.36 TCGA-D5-6540-01 19 17038859 17038859 G A CPAMD8 Silent p.G1157G 0.46 TCGA-D5-6540-01 19 17369154 17369154 G A USHBP1 Missense_Mutation p.R363W 0.22 tolerated(0.17) benign(0.011) TCGA-D5-6540-01 19 17443939 17443939 C A ANO8 Nonsense_Mutation p.E154* 0.29 TCGA-D5-6540-01 19 17443967 17443967 G T ANO8 Nonsense_Mutation p.C144* 0.42 TCGA-D5-6540-01 19 17679446 17679446 C A COLGALT1 Silent p.A251A 0.12 TCGA-D5-6540-01 19 17683342 17683342 C T COLGALT1 Missense_Mutation p.P294S 0.21 deleterious(0) possibly_damaging(0.764) TCGA-D5-6540-01 19 17837618 17837618 C T MAP1S Silent p.S475S 0.23 TCGA-D5-6540-01 19 18724973 18724973 A G TMEM59L Missense_Mutation p.S126G 0.10 tolerated(0.35) benign(0.003) TCGA-D5-6540-01 19 18971771 18971771 C A UPF1 Missense_Mutation p.L813M 0.47 tolerated(0.19) benign(0.148) TCGA-D5-6540-01 19 23542268 23542268 G A ZNF91 Silent p.G1171G 0.32 TCGA-D5-6540-01 19 23836168 23836168 G C ZNF675 Missense_Mutation p.L523V 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-D5-6540-01 19 23869903 23869903 A G ZNF675 5'UTR 0.17 TCGA-D5-6540-01 19 2834816 2834816 C T ZNF554 Missense_Mutation p.A528V 0.33 tolerated(0.07) benign(0.244) TCGA-D5-6540-01 19 2987724 2987724 G A TLE6 Silent p.G187G 0.26 TCGA-D5-6540-01 19 30164986 30164986 C - PLEKHF1 Frame_Shift_Del p.L82Wfs*20 0.31 TCGA-D5-6540-01 19 30199287 30199287 G A C19orf12 Silent p.L23L 0.27 TCGA-D5-6540-01 19 32844463 32844463 G A ZNF507 Missense_Mutation p.E243K 0.45 deleterious(0) possibly_damaging(0.905) TCGA-D5-6540-01 19 32844471 32844471 C T ZNF507 Silent p.Y245Y 0.38 TCGA-D5-6540-01 19 33324145 33324145 A G SLC7A9 Missense_Mutation p.Y437H 0.40 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 19 34302406 34302406 G A KCTD15 Silent p.T214T 0.36 TCGA-D5-6540-01 19 3496805 3496805 G A DOHH Missense_Mutation p.T3M 0.35 deleterious(0.03) possibly_damaging(0.772) TCGA-D5-6540-01 19 35631517 35631517 C T FXYD1 Silent p.H26H 0.26 TCGA-D5-6540-01 19 35655084 35655084 G A FXYD5 Silent p.T106T 0.36 TCGA-D5-6540-01 19 35758308 35758308 C A LSR Missense_Mutation p.R529S 0.44 tolerated(0.2) possibly_damaging(0.796) TCGA-D5-6540-01 19 36128242 36128242 C T RBM42 Missense_Mutation p.R440C 0.39 deleterious(0.04) unknown(0) TCGA-D5-6540-01 19 36159451 36159451 C A UPK1A Silent p.V60V 0.39 TCGA-D5-6540-01 19 36224532 36224532 C T KMT2B Missense_Mutation p.R2332C 0.34 benign(0.095) TCGA-D5-6540-01 19 36269405 36269405 C T ARHGAP33 Missense_Mutation p.R104C 0.26 tolerated_low_confidence(0.1) possibly_damaging(0.835) TCGA-D5-6540-01 19 36357236 36357236 G A KIRREL2 Missense_Mutation p.A657T 0.36 tolerated(0.05) benign(0.001) TCGA-D5-6540-01 19 36499132 36499132 C - SYNE4 Frame_Shift_Del p.G89Afs*14 0.21 TCGA-D5-6540-01 19 37005959 37005959 C T ZNF260 Missense_Mutation p.G61D 0.20 deleterious(0.01) benign(0.035) TCGA-D5-6540-01 19 38631842 38631842 C T SIPA1L3 Silent p.Y1054Y 0.36 TCGA-D5-6540-01 19 38857828 38857828 C - CATSPERG Frame_Shift_Del p.P884Qfs*18 0.37 TCGA-D5-6540-01 19 38958286 38958286 G A RYR1 Missense_Mutation p.R1072H 0.33 probably_damaging(0.995) TCGA-D5-6540-01 19 38976840 38976840 C T RYR1 Silent p.L1849L 0.24 TCGA-D5-6540-01 19 39008161 39008161 G A RYR1 Missense_Mutation p.R3283Q 0.40 benign(0.029) TCGA-D5-6540-01 19 39019689 39019689 G A RYR1 Silent p.T3711T 0.29 TCGA-D5-6540-01 19 39517630 39517630 G A FBXO27 Silent p.H196H 0.38 TCGA-D5-6540-01 19 39691111 39691111 G A NCCRP1 Missense_Mutation p.G225D 0.48 deleterious(0.03) probably_damaging(0.986) TCGA-D5-6540-01 19 3977916 3977916 G A EEF2 Silent p.G656G 0.28 TCGA-D5-6540-01 19 40721144 40721145 - G MAP3K10 Frame_Shift_Ins p.Q939Afs*29 0.31 TCGA-D5-6540-01 19 42410903 42410903 G - ARHGEF1 Frame_Shift_Del p.N919Tfs*67 0.08 TCGA-D5-6540-01 19 42584318 42584318 G A ZNF574 Silent p.E520E 0.54 TCGA-D5-6540-01 19 4262096 4262096 C T CCDC94 Silent p.T231T 0.45 TCGA-D5-6540-01 19 42856524 42856524 C T MEGF8 Missense_Mutation p.A1022V 0.21 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 19 42859978 42859978 G A MEGF8 Missense_Mutation p.A1338T 0.27 tolerated(0.53) possibly_damaging(0.503) TCGA-D5-6540-01 19 43244548 43244548 C T PSG3 5'UTR 0.19 TCGA-D5-6540-01 19 43979554 43979554 G - PHLDB3 3'UTR 0.38 TCGA-D5-6540-01 19 44039455 44039455 G A ZNF575 Silent p.P118P 0.69 TCGA-D5-6540-01 19 44933968 44933968 C T ZNF229 Missense_Mutation p.V330I 0.37 tolerated(0.12) benign(0.001) TCGA-D5-6540-01 19 4494054 4494054 G T HDGFRP2 Missense_Mutation p.S305I 0.11 tolerated(0.11) unknown(0) TCGA-D5-6540-01 19 45377695 45377695 C T PVRL2 Silent p.A334A 0.51 TCGA-D5-6540-01 19 45805664 45805664 C - MARK4 Frame_Shift_Del p.R654Gfs*9 0.37 TCGA-D5-6540-01 19 46191662 46191662 G A SNRPD2 Silent p.R55R 0.28 TCGA-D5-6540-01 19 46417805 46417805 C - NANOS2 Frame_Shift_Del p.L50Wfs*32 0.08 TCGA-D5-6540-01 19 46509884 46509885 - G CCDC61 Frame_Shift_Ins p.R103Pfs*27 0.22 TCGA-D5-6540-01 19 47127191 47127191 C T PTGIR Missense_Mutation p.A98T 0.38 tolerated(0.1) benign(0.362) TCGA-D5-6540-01 19 47570545 47570545 C T ZC3H4 Missense_Mutation p.A994T 0.33 unknown(0) TCGA-D5-6540-01 19 47910728 47910728 G A MEIS3 Silent p.C318C 0.34 TCGA-D5-6540-01 19 48197558 48197558 C A GLTSCR1 Missense_Mutation p.P824T 0.41 unknown(0) TCGA-D5-6540-01 19 48613769 48613769 G A PLA2G4C Missense_Mutation p.R2C 0.14 unknown(0) TCGA-D5-6540-01 19 48832635 48832635 A G EMP3 Missense_Mutation p.M70V 0.29 deleterious(0) possibly_damaging(0.824) TCGA-D5-6540-01 19 49247780 49247780 C A IZUMO1 Missense_Mutation p.K109N 0.35 tolerated(0.08) benign(0.426) TCGA-D5-6540-01 19 49473096 49473096 C T GYS1 Missense_Mutation p.R609H 0.33 tolerated(0.1) probably_damaging(0.998) TCGA-D5-6540-01 19 49637372 49637372 G A PPFIA3 Missense_Mutation p.E443K 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-D5-6540-01 19 50102731 50102731 G A PRR12 Missense_Mutation p.R1294H 0.40 possibly_damaging(0.715) TCGA-D5-6540-01 19 50148367 50148367 G A SCAF1 Silent p.T28T 0.32 TCGA-D5-6540-01 19 50310499 50310499 C A FUZ Missense_Mutation p.R389L 0.41 tolerated(0.22) benign(0.045) TCGA-D5-6540-01 19 50434211 50434211 C - ATF5 Frame_Shift_Del p.L37Wfs*31 0.23 TCGA-D5-6540-01 19 50435892 50435892 C T ATF5 Missense_Mutation p.P131L 0.34 tolerated(0.42) benign(0.014) TCGA-D5-6540-01 19 50482395 50482395 G A VRK3 Missense_Mutation p.R461C 0.43 deleterious(0.05) benign(0.022) TCGA-D5-6540-01 19 50826330 50826330 C - KCNC3 Frame_Shift_Del p.G627Efs*27 0.33 TCGA-D5-6540-01 19 51015813 51015813 G A ASPDH Missense_Mutation p.H153Y 0.47 deleterious(0) probably_damaging(0.939) TCGA-D5-6540-01 19 51226868 51226868 G T CLEC11A Missense_Mutation p.W29L 0.43 deleterious_low_confidence(0.01) benign(0.115) TCGA-D5-6540-01 19 5131146 5131146 T G KDM4B Missense_Mutation p.F459V 0.41 benign(0.001) TCGA-D5-6540-01 19 5144082 5144082 C T KDM4B Silent p.A885A 0.39 TCGA-D5-6540-01 19 5208015 5208015 C T PTPRS Missense_Mutation p.R1899Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 19 5223175 5223175 C T PTPRS Silent p.T876T 0.47 TCGA-D5-6540-01 19 52715988 52715988 G A PPP2R1A Missense_Mutation p.A185T 0.26 deleterious(0) probably_damaging(0.954) TCGA-D5-6540-01 19 52825121 52825121 T C ZNF480 Silent p.N206N 0.37 TCGA-D5-6540-01 19 52955219 52955219 C T ZNF578 5'Flank 0.32 TCGA-D5-6540-01 19 53762226 53762226 G T VN1R2 Nonsense_Mutation p.E200* 0.39 TCGA-D5-6540-01 19 53884897 53884897 C T ZNF525 Silent p.Y355Y 0.38 TCGA-D5-6540-01 19 54378658 54378658 G A MYADM 3'UTR 0.40 TCGA-D5-6540-01 19 54657354 54657354 G - CNOT3 Intron 0.27 TCGA-D5-6540-01 19 54822684 54822684 C A LILRA5 Nonsense_Mutation p.G238* 0.35 TCGA-D5-6540-01 19 55143163 55143163 C T LILRB1 Missense_Mutation p.R95W 0.38 deleterious(0.03) benign(0.045) TCGA-D5-6540-01 19 55689586 55689586 A C SYT5 Missense_Mutation p.L77R 0.50 tolerated(0.07) benign(0.288) TCGA-D5-6540-01 19 55877313 55877313 C T IL11 3'UTR 0.39 TCGA-D5-6540-01 19 5594108 5594108 G T SAFB2 Silent p.R667R 0.42 TCGA-D5-6540-01 19 55993235 55993235 G A ZNF628 Silent p.T225T 0.48 TCGA-D5-6540-01 19 55995432 55995432 C A ZNF628 Missense_Mutation p.P958T 0.31 deleterious(0.03) unknown(0) TCGA-D5-6540-01 19 56104860 56104860 C T FIZ1 Silent p.A149A 0.50 TCGA-D5-6540-01 19 56223303 56223303 G A NLRP9 Silent p.C902C 0.35 TCGA-D5-6540-01 19 56244405 56244406 - T NLRP9 Frame_Shift_Ins p.M265Dfs*36 0.33 TCGA-D5-6540-01 19 56499348 56499348 C A NLRP8 3'UTR 0.19 TCGA-D5-6540-01 19 5687987 5687987 G A HSD11B1L Silent p.T243T 0.33 TCGA-D5-6540-01 19 57764930 57764930 A C ZNF805 Missense_Mutation p.Q248P 0.34 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 19 577880 577880 T C BSG Silent p.F58F 0.26 TCGA-D5-6540-01 19 57889484 57889484 C T ZNF547 Silent p.C380C 0.10 TCGA-D5-6540-01 19 57931803 57931803 G A ZNF17 Missense_Mutation p.A315T 0.10 tolerated(0.06) benign(0.027) TCGA-D5-6540-01 19 58017811 58017812 - A ZNF773 Frame_Shift_Ins p.Q118Afs*59 0.11 TCGA-D5-6540-01 19 58067758 58067758 C A ZNF550 5'Flank 0.38 TCGA-D5-6540-01 19 58190257 58190257 C T ZSCAN4 Missense_Mutation p.T429I 0.42 tolerated(0.1) benign(0.083) TCGA-D5-6540-01 19 58549468 58549468 C T ZSCAN1 Silent p.G88G 0.08 TCGA-D5-6540-01 19 58797167 58797167 C T ZNF8 Missense_Mutation p.R51C 0.40 deleterious(0.01) possibly_damaging(0.824) TCGA-D5-6540-01 19 58806678 58806678 C T ZNF8 Missense_Mutation p.R502C 0.35 tolerated(0.15) benign(0.03) TCGA-D5-6540-01 19 58864792 58864792 G A A1BG Silent p.L4L 0.34 TCGA-D5-6540-01 19 6415184 6415184 G - KHSRP Frame_Shift_Del p.Q699Sfs*24 0.26 TCGA-D5-6540-01 19 6465557 6465557 A G CRB3 Missense_Mutation p.I28M 0.32 tolerated_low_confidence(0.14) benign(0.035) TCGA-D5-6540-01 19 685702 685702 C T PRSS57 3'UTR 0.42 TCGA-D5-6540-01 19 6916327 6916327 G - EMR1 Frame_Shift_Del p.D458Ifs*3 0.33 TCGA-D5-6540-01 19 758239 758239 C T MISP Silent p.P431P 0.39 TCGA-D5-6540-01 19 7585373 7585373 C T ZNF358 Silent p.A415A 0.38 TCGA-D5-6540-01 19 7621350 7621350 G A PNPLA6 Silent p.S1045S 0.36 TCGA-D5-6540-01 19 7830570 7830570 C T CLEC4M Silent p.D87D 0.37 TCGA-D5-6540-01 19 7976149 7976149 C - MAP2K7 Frame_Shift_Del p.P292Qfs*119 0.36 TCGA-D5-6540-01 19 8028649 8028649 G A ELAVL1 Silent p.G233G 0.40 TCGA-D5-6540-01 19 8152012 8152012 C T FBN3 Missense_Mutation p.V2235I 0.30 tolerated(1) benign(0.02) TCGA-D5-6540-01 19 8563997 8563997 T C PRAM1 Missense_Mutation p.Q232R 0.11 deleterious(0.01) benign(0.221) TCGA-D5-6540-01 19 9049648 9049648 T G MUC16 Silent p.T10661T 0.39 TCGA-D5-6540-01 19 9058612 9058612 T C MUC16 Missense_Mutation p.T9612A 0.43 unknown(0) TCGA-D5-6540-01 19 9067479 9067479 G T MUC16 Missense_Mutation p.A6656D 0.42 unknown(0) TCGA-D5-6540-01 19 9801884 9801884 A C ZNF812 Missense_Mutation p.F99V 0.30 tolerated(0.5) probably_damaging(0.986) TCGA-D5-6540-01 1 100680426 100680426 G T DBT Missense_Mutation p.P296T 0.35 tolerated(0.17) benign(0.01) TCGA-D5-6540-01 1 100696362 100696362 T - DBT Frame_Shift_Del p.K120Nfs*6 0.29 TCGA-D5-6540-01 1 101006344 101006344 T - GPR88 3'UTR 0.66 TCGA-D5-6540-01 1 1018250 1018250 G A C1orf159 3'UTR 0.38 TCGA-D5-6540-01 1 103461421 103461421 T - COL11A1 Frame_Shift_Del p.K780Rfs*15 0.19 TCGA-D5-6540-01 1 104160166 104160166 G A AMY2A Missense_Mutation p.R35Q 0.52 deleterious(0.01) possibly_damaging(0.713) TCGA-D5-6540-01 1 10699245 10699245 C G CASZ1 Missense_Mutation p.E1678D 0.35 tolerated_low_confidence(0.46) unknown(0) TCGA-D5-6540-01 1 10711060 10711060 G A CASZ1 Silent p.G918G 0.40 TCGA-D5-6540-01 1 108023243 108023243 C T NTNG1 Silent p.C467C 0.34 TCGA-D5-6540-01 1 108247245 108247245 A C VAV3 Missense_Mutation p.C544W 0.30 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 1 109811737 109811737 C - CELSR2 Frame_Shift_Del p.V2215Wfs*26 0.34 TCGA-D5-6540-01 1 110038981 110038981 G A CYB561D1 3'UTR 0.36 TCGA-D5-6540-01 1 110168245 110168245 G A AMPD2 Intron 0.40 TCGA-D5-6540-01 1 110172973 110172973 G A AMPD2 Missense_Mutation p.R755H 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 1 11087278 11087278 T C MASP2 Silent p.L575L 0.07 TCGA-D5-6540-01 1 11150670 11150670 G A EXOSC10 Silent p.V233V 0.33 TCGA-D5-6540-01 1 11159887 11159888 - T EXOSC10 Frame_Shift_Ins p.M1? 0.37 TCGA-D5-6540-01 1 112318747 112318747 C T KCND3 Silent p.T640T 0.37 TCGA-D5-6540-01 1 11254995 11254995 G A ANGPTL7 Missense_Mutation p.G319D 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 1 113244102 113244102 G T RHOC 3'UTR 0.40 TCGA-D5-6540-01 1 1169384 1169384 G A B3GALT6 3'UTR 0.22 TCGA-D5-6540-01 1 117156506 117156506 G T IGSF3 Missense_Mutation p.P238H 0.14 deleterious(0) benign(0.243) TCGA-D5-6540-01 1 117529431 117529431 G A PTGFRN Missense_Mutation p.A828T 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6540-01 1 1192624 1192624 A G UBE2J2 Missense_Mutation p.M96T 0.35 tolerated(0.05) possibly_damaging(0.461) TCGA-D5-6540-01 1 144994736 144994736 G T PDE4DIP 5'UTR 0.10 TCGA-D5-6540-01 1 145586900 145586900 G A NUDT17 Missense_Mutation p.T263I 0.19 tolerated(0.28) possibly_damaging(0.798) TCGA-D5-6540-01 1 145747050 145747050 T C PDZK1 Missense_Mutation p.S3P 0.39 deleterious(0) benign(0.042) TCGA-D5-6540-01 1 1469460 1469460 G T ATAD3A 3'UTR 0.35 TCGA-D5-6540-01 1 149895589 149895589 G A SF3B4 Missense_Mutation p.R374C 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-D5-6540-01 1 150460397 150460397 G A TARS2 Missense_Mutation p.A44T 0.38 tolerated(0.24) benign(0.012) TCGA-D5-6540-01 1 150526439 150526439 C - ADAMTSL4 Frame_Shift_Del p.H324Qfs*19 0.37 TCGA-D5-6540-01 1 151377816 151377816 C T POGZ Missense_Mutation p.R1232H 0.30 tolerated(0.4) probably_damaging(0.999) TCGA-D5-6540-01 1 152080828 152080828 C T TCHH Missense_Mutation p.R1622H 0.32 unknown(0) TCGA-D5-6540-01 1 152275691 152275691 A C FLG Missense_Mutation p.S3891A 0.13 unknown(0) TCGA-D5-6540-01 1 152282507 152282507 A G FLG Missense_Mutation p.Y1619H 0.12 benign(0.403) TCGA-D5-6540-01 1 152282523 152282523 C A FLG Silent p.S1613S 0.09 TCGA-D5-6540-01 1 152595319 152595319 G A LCE3A Silent p.G87G 0.33 TCGA-D5-6540-01 1 152648586 152648586 G A LCE2C Missense_Mutation p.C32Y 0.40 tolerated_low_confidence(0.12) unknown(0) TCGA-D5-6540-01 1 152732430 152732430 C T KPRP Silent p.C122C 0.13 TCGA-D5-6540-01 1 153789848 153789848 C T GATAD2B Silent p.P300P 0.37 TCGA-D5-6540-01 1 154215749 154215749 G A UBAP2L Silent p.A271A 0.36 TCGA-D5-6540-01 1 154932071 154932071 G - PYGO2 Frame_Shift_Del p.F136Sfs*25 0.29 TCGA-D5-6540-01 1 156616651 156616651 C T BCAN Silent p.G50G 0.36 TCGA-D5-6540-01 1 15766986 15766986 C A CTRC Intron 0.27 TCGA-D5-6540-01 1 157771287 157771287 C A FCRL1 Missense_Mutation p.A323S 0.43 deleterious(0.02) possibly_damaging(0.87) TCGA-D5-6540-01 1 157805632 157805632 C T CD5L Silent p.S123S 0.38 TCGA-D5-6540-01 1 158592844 158592844 A C SPTA1 Missense_Mutation p.W2017G 0.36 deleterious(0) probably_damaging(0.938) TCGA-D5-6540-01 1 158687856 158687856 A G OR6K3 Missense_Mutation p.F17S 0.38 deleterious(0) probably_damaging(0.973) TCGA-D5-6540-01 1 159024743 159024743 A - IFI16 3'UTR 0.29 TCGA-D5-6540-01 1 160057400 160057400 T - KCNJ9 Frame_Shift_Del p.F326Lfs*122 0.18 TCGA-D5-6540-01 1 161494936 161494936 C T HSPA6 Missense_Mutation p.A163V 0.42 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-D5-6540-01 1 161789608 161789608 G T ATF6 Missense_Mutation p.E365D 0.24 deleterious(0.02) probably_damaging(0.969) TCGA-D5-6540-01 1 162740172 162740172 C A DDR2 Silent p.R458R 0.38 TCGA-D5-6540-01 1 16375032 16375032 G A CLCNKB Missense_Mutation p.A204T 0.29 deleterious(0) probably_damaging(0.936) TCGA-D5-6540-01 1 167793949 167793949 C T ADCY10 Missense_Mutation p.A1299T 0.06 tolerated(0.18) possibly_damaging(0.742) TCGA-D5-6540-01 1 169446809 169446809 A - SLC19A2 Frame_Shift_Del p.Y131Mfs*45 0.23 TCGA-D5-6540-01 1 169831869 169831869 A C SCYL3 Missense_Mutation p.L342R 0.37 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 1 169930292 169930292 G A KIFAP3 Missense_Mutation p.R690C 0.30 deleterious(0) probably_damaging(0.97) TCGA-D5-6540-01 1 17270695 17270695 C T CROCC Missense_Mutation p.R637W 0.40 probably_damaging(0.968) TCGA-D5-6540-01 1 177133667 177133667 C T ASTN1 Missense_Mutation p.R49H 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D5-6540-01 1 17914103 17914103 C - ARHGEF10L Frame_Shift_Del p.P64Hfs*2 0.33 TCGA-D5-6540-01 1 186269343 186269343 C T PRG4 Missense_Mutation p.A66V 0.42 benign(0.052) TCGA-D5-6540-01 1 190423841 190423841 G A BRINP3 Silent p.Y60Y 0.07 TCGA-D5-6540-01 1 19176017 19176017 A T TAS1R2 Missense_Mutation p.F429I 0.40 deleterious(0) probably_damaging(0.994) TCGA-D5-6540-01 1 19199253 19199253 G T ALDH4A1 3'UTR 0.18 TCGA-D5-6540-01 1 196436879 196436879 A G KCNT2 Missense_Mutation p.V166A 0.37 deleterious(0.04) probably_damaging(0.93) TCGA-D5-6540-01 1 19683224 19683224 C T CAPZB Missense_Mutation p.A165T 0.37 tolerated(0.09) possibly_damaging(0.59) TCGA-D5-6540-01 1 197053334 197053335 - T ASPM 3'UTR 0.38 TCGA-D5-6540-01 1 197112062 197112062 T A ASPM Missense_Mutation p.E440D 0.40 tolerated(0.17) benign(0.035) TCGA-D5-6540-01 1 197391007 197391007 C A CRB1 Missense_Mutation p.S683R 0.42 deleterious(0) benign(0.315) TCGA-D5-6540-01 1 200613447 200613447 G T DDX59 Missense_Mutation p.L599M 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.522) TCGA-D5-6540-01 1 20067331 20067331 G T TMCO4 Silent p.T327T 0.44 TCGA-D5-6540-01 1 201031162 201031162 C T CACNA1S Missense_Mutation p.R988H 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 1 201824265 201824265 G T IPO9 Nonsense_Mutation p.E309* 0.32 TCGA-D5-6540-01 1 202574800 202574800 C T SYT2 Missense_Mutation p.G34E 0.44 tolerated(0.55) benign(0) TCGA-D5-6540-01 1 202864766 202864766 C T KLHL12 Missense_Mutation p.R340H 0.35 tolerated(0.11) possibly_damaging(0.583) TCGA-D5-6540-01 1 204226532 204226532 G T PLEKHA6 Silent p.I491I 0.38 TCGA-D5-6540-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.45 TCGA-D5-6540-01 1 204429749 204429749 G T PIK3C2B Missense_Mutation p.R451S 0.40 tolerated(0.09) probably_damaging(0.939) TCGA-D5-6540-01 1 205138709 205138709 C T DSTYK Silent p.P302P 0.06 TCGA-D5-6540-01 1 205767086 205767086 C A SLC41A1 Missense_Mutation p.R313M 0.32 deleterious(0) possibly_damaging(0.594) TCGA-D5-6540-01 1 206822148 206822148 G T DYRK3 Missense_Mutation p.K535N 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-D5-6540-01 1 21031304 21031304 C T KIF17 Silent p.T253T 0.41 TCGA-D5-6540-01 1 226827350 226827350 C T ITPKB Missense_Mutation p.G821S 0.46 deleterious(0) possibly_damaging(0.78) TCGA-D5-6540-01 1 226923849 226923849 C T ITPKB Nonsense_Mutation p.W437* 0.59 TCGA-D5-6540-01 1 228285832 228285832 G A ARF1 3'UTR 0.33 TCGA-D5-6540-01 1 228412171 228412171 G T OBSCN Missense_Mutation p.V981L 0.33 possibly_damaging(0.545) TCGA-D5-6540-01 1 228509324 228509324 C T OBSCN Nonsense_Mutation p.R5885* 0.29 TCGA-D5-6540-01 1 228596290 228596290 C A TRIM17 Missense_Mutation p.G349V 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 1 228602767 228602767 C T TRIM17 Missense_Mutation p.A3T 0.27 tolerated(0.17) possibly_damaging(0.512) TCGA-D5-6540-01 1 229794969 229794969 C A URB2 Silent p.I1500I 0.31 TCGA-D5-6540-01 1 23191380 23191380 C T EPHB2 Silent p.S326S 0.32 TCGA-D5-6540-01 1 233114030 233114030 T G NTPCR 3'UTR 0.27 TCGA-D5-6540-01 1 235613407 235613407 G A B3GALNT2 3'UTR 0.58 TCGA-D5-6540-01 1 236142365 236142365 C T NID1 Silent p.T1184T 0.38 TCGA-D5-6540-01 1 236910985 236910985 C T ACTN2 Silent p.D475D 0.36 TCGA-D5-6540-01 1 237732499 237732499 G A RYR2 Missense_Mutation p.D1160N 0.32 probably_damaging(0.999) TCGA-D5-6540-01 1 237756929 237756929 C T RYR2 Missense_Mutation p.H1477Y 0.34 benign(0.18) TCGA-D5-6540-01 1 237838146 237838146 G A RYR2 Missense_Mutation p.D2944N 0.44 benign(0.004) TCGA-D5-6540-01 1 240256024 240256029 GCAGCA - FMN2 In_Frame_Del p.Q211_Q212del 0.24 TCGA-D5-6540-01 1 240370598 240370598 C T FMN2 Missense_Mutation p.P829L 0.34 unknown(0) TCGA-D5-6540-01 1 240637615 240637615 A G FMN2 3'UTR 0.36 TCGA-D5-6540-01 1 240656415 240656415 C T GREM2 Missense_Mutation p.A121T 0.33 tolerated(0.11) possibly_damaging(0.85) TCGA-D5-6540-01 1 244643032 244643032 G T C1orf101 Missense_Mutation p.R91L 0.37 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 1 244816633 244816633 A T DESI2 Missense_Mutation p.L6F 0.31 tolerated(0.28) benign(0.109) TCGA-D5-6540-01 1 245850103 245850103 G T KIF26B Missense_Mutation p.S1273I 0.41 deleterious(0) unknown(0) TCGA-D5-6540-01 1 247201264 247201264 A G ZNF670 Silent p.H219H 0.41 TCGA-D5-6540-01 1 247464283 247464283 C T ZNF496 Silent p.P434P 0.30 TCGA-D5-6540-01 1 247737690 247737690 T G GCSAML 3'UTR 0.31 TCGA-D5-6540-01 1 248059404 248059404 C T OR2W3 Silent p.H172H 0.33 TCGA-D5-6540-01 1 249212558 249212558 G A PGBD2 Missense_Mutation p.R592Q 0.38 tolerated_low_confidence(0.09) benign(0.005) TCGA-D5-6540-01 1 2493160 2493160 C T TNFRSF14 Silent p.H200H 0.33 TCGA-D5-6540-01 1 26900923 26900923 T - RPS6KA1 3'Flank 0.38 TCGA-D5-6540-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.36 TCGA-D5-6540-01 1 27120709 27120709 G A PIGV Missense_Mutation p.G62S 0.38 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 1 27224069 27224069 C A GPATCH3 Missense_Mutation p.R200L 0.40 tolerated(0.13) benign(0.011) TCGA-D5-6540-01 1 27699719 27699719 C T FCN3 Missense_Mutation p.A101T 0.39 tolerated(0.67) benign(0.024) TCGA-D5-6540-01 1 32256384 32256384 C T SPOCD1 Silent p.A1157A 0.46 TCGA-D5-6540-01 1 33236487 33236487 C - KIAA1522 Frame_Shift_Del p.P571Hfs*81 0.38 TCGA-D5-6540-01 1 33832922 33832922 G A PHC2 Silent p.G257G 0.37 TCGA-D5-6540-01 1 34037281 34037281 C T CSMD2 Missense_Mutation p.R2605Q 0.08 tolerated(0.2) possibly_damaging(0.746) TCGA-D5-6540-01 1 3428619 3428619 G A MEGF6 Silent p.C309C 0.35 TCGA-D5-6540-01 1 3477258 3477258 G A MEGF6 Intron 0.40 TCGA-D5-6540-01 1 35227231 35227231 G A GJB4 Missense_Mutation p.G126R 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-D5-6540-01 1 35250866 35250866 C - GJB3 Frame_Shift_Del p.C170Afs*98 0.33 TCGA-D5-6540-01 1 36031052 36031052 C T NCDN Missense_Mutation p.R660C 0.49 deleterious(0) possibly_damaging(0.585) TCGA-D5-6540-01 1 36204752 36204752 G A CLSPN Nonsense_Mutation p.R1139* 0.31 TCGA-D5-6540-01 1 36755361 36755361 G A THRAP3 Missense_Mutation p.A581T 0.39 tolerated(0.18) probably_damaging(0.982) TCGA-D5-6540-01 1 36786203 36786203 C - SH3D21 Frame_Shift_Del p.I649* 0.34 TCGA-D5-6540-01 1 36932228 36932228 G A CSF3R Silent p.S774S 0.41 TCGA-D5-6540-01 1 36935323 36935323 G - CSF3R Frame_Shift_Del p.S469Afs*22 0.39 TCGA-D5-6540-01 1 37267562 37267562 T C GRIK3 Missense_Mutation p.M884V 0.37 tolerated_low_confidence(1) benign(0) TCGA-D5-6540-01 1 38034725 38034725 T G GNL2 Missense_Mutation p.N532T 0.07 deleterious(0.03) probably_damaging(0.917) TCGA-D5-6540-01 1 38183978 38183978 G T EPHA10 3'UTR 0.13 TCGA-D5-6540-01 1 38184055 38184055 C - EPHA10 Frame_Shift_Del p.V1006Cfs*82 0.33 TCGA-D5-6540-01 1 39801533 39801533 A G MACF1 Intron 0.38 TCGA-D5-6540-01 1 39879817 39879817 G A KIAA0754 Missense_Mutation p.A1158T 0.31 benign(0.01) TCGA-D5-6540-01 1 40420991 40420991 C A MFSD2A Missense_Mutation p.S9R 0.41 tolerated(0.39) unknown(0) TCGA-D5-6540-01 1 41235050 41235050 A G NFYC Missense_Mutation p.Q303R 0.15 deleterious_low_confidence(0) benign(0.313) TCGA-D5-6540-01 1 41289856 41289856 C T KCNQ4 Silent p.D406D 0.41 TCGA-D5-6540-01 1 43916906 43916906 C T SZT2 3'UTR 0.29 TCGA-D5-6540-01 1 44438185 44438185 G A DPH2 Missense_Mutation p.A482T 0.35 deleterious(0.01) benign(0.137) TCGA-D5-6540-01 1 45216167 45216167 G A KIF2C Missense_Mutation p.A124T 0.33 tolerated(0.54) benign(0.001) TCGA-D5-6540-01 1 46489567 46489567 T G MAST2 Silent p.T565T 0.33 TCGA-D5-6540-01 1 46659280 46659280 C - POMGNT1 Frame_Shift_Del p.V328Cfs*5 0.27 TCGA-D5-6540-01 1 46714235 46714235 T C RAD54L Missense_Mutation p.S19P 0.10 tolerated_low_confidence(0.31) benign(0) TCGA-D5-6540-01 1 46827603 46827603 A C NSUN4 3'UTR 0.41 TCGA-D5-6540-01 1 50884472 50884472 G A DMRTA2 Silent p.R498R 0.41 TCGA-D5-6540-01 1 51767404 51767404 G A TTC39A Missense_Mutation p.A302V 0.36 deleterious(0) possibly_damaging(0.856) TCGA-D5-6540-01 1 52811909 52811909 T - ZFYVE9 3'UTR 0.24 TCGA-D5-6540-01 1 55081757 55081757 G - FAM151A Frame_Shift_Del p.T118Lfs*43 0.32 TCGA-D5-6540-01 1 55085573 55085573 C T FAM151A Missense_Mutation p.A76T 0.34 deleterious(0) possibly_damaging(0.812) TCGA-D5-6540-01 1 55566586 55566586 A - USP24 Frame_Shift_Del p.Y1733Tfs*10 0.24 TCGA-D5-6540-01 1 57537967 57537967 T - DAB1 Frame_Shift_Del p.T143Qfs*12 0.32 TCGA-D5-6540-01 1 61543231 61543231 G A NFIA 5'Flank 0.15 TCGA-D5-6540-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.50 TCGA-D5-6540-01 1 62916296 62916296 C T USP1 Missense_Mutation p.L668F 0.31 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 1 66075662 66075662 T G LEPR Silent p.S595S 0.35 TCGA-D5-6540-01 1 66075711 66075711 C T LEPR Missense_Mutation p.R612C 0.36 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 1 6649251 6649251 C - ZBTB48 Frame_Shift_Del p.E684Rfs*? 0.29 TCGA-D5-6540-01 1 66723527 66723527 C A PDE4B Missense_Mutation p.L189I 0.36 tolerated(0.32) benign(0.006) TCGA-D5-6540-01 1 76262892 76262892 G A MSH4 Silent p.A74A 0.26 TCGA-D5-6540-01 1 76540540 76540540 C T ST6GALNAC3 5'UTR 0.41 TCGA-D5-6540-01 1 76877889 76877890 - A ST6GALNAC3 Frame_Shift_Ins p.N139Kfs*3 0.20 TCGA-D5-6540-01 1 85122088 85122088 G A SSX2IP Silent p.L386L 0.31 TCGA-D5-6540-01 1 85598759 85598760 AT - WDR63 3'UTR 0.42 TCGA-D5-6540-01 1 87025691 87025691 T G CLCA4 Nonsense_Mutation p.L79* 0.35 TCGA-D5-6540-01 1 90179646 90179647 - C LRRC8C Frame_Shift_Ins p.W509Lfs*20 0.32 TCGA-D5-6540-01 1 91727847 91727848 - T HFM1 Frame_Shift_Ins p.V1397Sfs*6 0.24 TCGA-D5-6540-01 1 92846371 92846371 A - RPAP2 Frame_Shift_Del p.N595Mfs*7 0.27 TCGA-D5-6540-01 1 9778765 9778765 C T PIK3CD Missense_Mutation p.A345V 0.33 tolerated(0.07) probably_damaging(0.983) TCGA-D5-6540-01 1 9833387 9833387 C T CLSTN1 Missense_Mutation p.V53M 0.05 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 1 989866 989866 C T AGRN Missense_Mutation p.A1972V 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-D5-6540-01 20 13260474 13260475 - C ISM1 Frame_Shift_Ins p.R194Qfs*14 0.33 TCGA-D5-6540-01 20 13797838 13797838 G - NDUFAF5 Frame_Shift_Del p.K343Nfs*30 0.14 TCGA-D5-6540-01 20 16488669 16488669 G A KIF16B Silent p.T211T 0.14 TCGA-D5-6540-01 20 16718045 16718045 A T SNRPB2 Missense_Mutation p.Q126L 0.33 tolerated(0.31) benign(0) TCGA-D5-6540-01 20 17640300 17640300 C - RRBP1 Intron 0.30 TCGA-D5-6540-01 20 21492824 21492824 G A NKX2-2 Missense_Mutation p.R187W 0.39 deleterious(0) probably_damaging(0.991) TCGA-D5-6540-01 20 23028480 23028480 G A THBD Silent p.C554C 0.40 TCGA-D5-6540-01 20 23065387 23065387 G - CD93 Frame_Shift_Del p.D482Mfs*106 0.32 TCGA-D5-6540-01 20 23334948 23334948 G A NXT1 Silent p.T90T 0.37 TCGA-D5-6540-01 20 23350274 23350274 G A GZF1 Missense_Mutation p.A561T 0.33 deleterious(0.04) probably_damaging(0.909) TCGA-D5-6540-01 20 2384253 2384253 G A TGM6 Missense_Mutation p.V374I 0.30 tolerated(0.07) possibly_damaging(0.885) TCGA-D5-6540-01 20 25755638 25755638 G A FAM182B Silent p.C106C 0.45 TCGA-D5-6540-01 20 25755800 25755800 C T FAM182B Silent p.S52S 0.34 TCGA-D5-6540-01 20 2985782 2985782 C T PTPRA Silent p.N273N 0.30 TCGA-D5-6540-01 20 30686919 30686919 C G HCK Nonsense_Mutation p.Y453* 0.10 TCGA-D5-6540-01 20 30797877 30797877 G A POFUT1 Missense_Mutation p.R43H 0.43 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 20 30797967 30797967 A G POFUT1 Missense_Mutation p.Y73C 0.38 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 20 31040712 31040712 C T C20orf112 Missense_Mutation p.R288H 0.34 deleterious(0) possibly_damaging(0.847) TCGA-D5-6540-01 20 32207369 32207369 C A CBFA2T2 Missense_Mutation p.A165D 0.40 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 20 32399336 32399336 C - CHMP4B Frame_Shift_Del p.Q23Rfs*14 0.32 TCGA-D5-6540-01 20 33578195 33578195 C A MYH7B Intron 0.11 TCGA-D5-6540-01 20 33874212 33874212 G T FAM83C 3'UTR 0.44 TCGA-D5-6540-01 20 34563887 34563887 G A CNBD2 Missense_Mutation p.R69Q 0.30 tolerated(0.11) benign(0.221) TCGA-D5-6540-01 20 34571911 34571911 C T CNBD2 Missense_Mutation p.R139C 0.27 deleterious(0.01) benign(0.164) TCGA-D5-6540-01 20 3654117 3654117 G T ADAM33 Silent p.A339A 0.44 TCGA-D5-6540-01 20 3654720 3654720 G A ADAM33 Silent p.Y243Y 0.44 TCGA-D5-6540-01 20 36572415 36572416 - A VSTM2L Frame_Shift_Ins p.L127Afs*81 0.30 TCGA-D5-6540-01 20 3679931 3679931 A G SIGLEC1 Silent p.T568T 0.27 TCGA-D5-6540-01 20 36869763 36869763 C T KIAA1755 Missense_Mutation p.G257E 0.40 tolerated(0.07) benign(0.077) TCGA-D5-6540-01 20 3734789 3734789 C T C20orf27 Silent p.T172T 0.36 TCGA-D5-6540-01 20 39831603 39831603 T C ZHX3 Missense_Mutation p.T652A 0.08 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 20 42168928 42168928 G A L3MBTL1 Missense_Mutation p.A749T 0.26 tolerated(0.07) benign(0.027) TCGA-D5-6540-01 20 43726372 43726372 C T KCNS1 Missense_Mutation p.M347I 0.23 deleterious(0) probably_damaging(0.996) TCGA-D5-6540-01 20 43727057 43727057 C T KCNS1 Missense_Mutation p.R119H 0.50 tolerated(0.17) probably_damaging(0.931) TCGA-D5-6540-01 20 43850397 43850397 G A SEMG2 Missense_Mutation p.G42R 0.43 tolerated(0.93) probably_damaging(0.999) TCGA-D5-6540-01 20 44052967 44052967 C T PIGT Missense_Mutation p.A449V 0.40 tolerated(0.28) probably_damaging(0.997) TCGA-D5-6540-01 20 44469709 44469709 C T SNX21 Silent p.H293H 0.57 TCGA-D5-6540-01 20 44519140 44519140 C T NEURL2 Missense_Mutation p.R164Q 0.38 tolerated(0.12) benign(0.007) TCGA-D5-6540-01 20 44539855 44539855 G A PLTP Silent p.L46L 0.38 TCGA-D5-6540-01 20 46386097 46386097 G A SULF2 Missense_Mutation p.P4L 0.41 tolerated_low_confidence(0.63) benign(0.014) TCGA-D5-6540-01 20 47244458 47244458 G A PREX1 Missense_Mutation p.R1604W 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 20 47863987 47863987 G A ZNFX1 Silent p.G1858G 0.13 TCGA-D5-6540-01 20 48741674 48741674 C T TMEM189 Intron 0.21 TCGA-D5-6540-01 20 50769083 50769083 C T ZFP64 Missense_Mutation p.A550T 0.44 tolerated(0.54) benign(0.056) TCGA-D5-6540-01 20 55072344 55072344 G A GCNT7 5'UTR 0.24 TCGA-D5-6540-01 20 55204598 55204598 G A TFAP2C 5'UTR 0.17 TCGA-D5-6540-01 20 56726041 56726041 C T C20orf85 Silent p.S7S 0.36 TCGA-D5-6540-01 20 56822474 56822474 C T PPP4R1L Missense_Mutation p.G143D 0.33 tolerated(0.06) possibly_damaging(0.527) TCGA-D5-6540-01 20 57266868 57266868 T C NPEPL1 5'Flank 0.28 TCGA-D5-6540-01 20 57782049 57782049 C T ZNF831 Missense_Mutation p.P1322L 0.41 tolerated(0.26) benign(0.003) TCGA-D5-6540-01 20 58415438 58415438 A C PHACTR3 Missense_Mutation p.T467P 0.36 tolerated(0.05) possibly_damaging(0.885) TCGA-D5-6540-01 20 5923215 5923215 T - TRMT6 Frame_Shift_Del p.K295Nfs*64 0.32 TCGA-D5-6540-01 20 60470095 60470095 G A CDH4 Missense_Mutation p.A394T 0.39 tolerated(0.49) benign(0.001) TCGA-D5-6540-01 20 60882842 60882842 G T ADRM1 Missense_Mutation p.A272S 0.34 tolerated(1) unknown(0) TCGA-D5-6540-01 20 60903002 60903002 G - LAMA5 Frame_Shift_Del p.R1573Afs*84 0.34 TCGA-D5-6540-01 20 60921571 60921571 C T LAMA5 Missense_Mutation p.V425I 0.38 benign(0.252) TCGA-D5-6540-01 20 61473361 61473361 C T TCFL5 Missense_Mutation p.S490N 0.34 tolerated_low_confidence(0.6) benign(0.012) TCGA-D5-6540-01 20 62119661 62119661 G A EEF1A2 Missense_Mutation p.A461V 0.33 deleterious_low_confidence(0.01) benign(0.026) TCGA-D5-6540-01 20 62324575 62324575 C A RTEL1 Silent p.G1001G 0.40 TCGA-D5-6540-01 20 62421840 62421840 A G ZBTB46 Missense_Mutation p.Y91H 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 20 62521287 62521287 G A TPD52L2 Missense_Mutation p.A227T 0.35 tolerated_low_confidence(0.4) benign(0.002) TCGA-D5-6540-01 20 62595544 62595544 G T ZNF512B Silent p.R454R 0.36 TCGA-D5-6540-01 20 644597 644597 G A SCRT2 Silent p.C214C 0.32 TCGA-D5-6540-01 20 826058 826058 G A FAM110A Missense_Mutation p.R204H 0.39 deleterious(0) probably_damaging(0.976) TCGA-D5-6540-01 20 941065 941065 G A RSPO4 Missense_Mutation p.R214C 0.42 deleterious(0) probably_damaging(0.942) TCGA-D5-6540-01 21 15013703 15013703 G A POTED Missense_Mutation p.R524H 0.69 tolerated(1) benign(0.001) TCGA-D5-6540-01 21 15748105 15748105 C T HSPA13 Missense_Mutation p.A206T 0.40 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 21 17172142 17172142 G T USP25 Missense_Mutation p.D208Y 0.32 deleterious(0) possibly_damaging(0.908) TCGA-D5-6540-01 21 18933752 18933752 G A CXADR Missense_Mutation p.R264H 0.32 tolerated(0.18) benign(0.021) TCGA-D5-6540-01 21 30302760 30302761 - A LTN1 3'UTR 0.41 TCGA-D5-6540-01 21 31768680 31768680 C T KRTAP13-1 Silent p.C92C 0.40 TCGA-D5-6540-01 21 31812684 31812684 C T KRTAP15-1 Silent p.C13C 0.40 TCGA-D5-6540-01 21 32639195 32639195 G T TIAM1 Missense_Mutation p.L32I 0.35 tolerated_low_confidence(0.79) benign(0.012) TCGA-D5-6540-01 21 33678836 33678836 G T MRAP Intron 0.45 TCGA-D5-6540-01 21 34067556 34067556 G A SYNJ1 Silent p.G211G 0.33 TCGA-D5-6540-01 21 34134464 34134464 G A PAXBP1 Missense_Mutation p.R272W 0.74 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 21 37788614 37788614 C T CHAF1B Missense_Mutation p.R544W 0.33 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-D5-6540-01 21 38877655 38877655 C T DYRK1A Nonsense_Mutation p.R437* 0.74 TCGA-D5-6540-01 21 43256586 43256586 G A PRDM15 Missense_Mutation p.R758C 0.46 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 21 43938612 43938612 G T SLC37A1 Missense_Mutation p.R16S 0.11 deleterious(0) possibly_damaging(0.703) TCGA-D5-6540-01 21 44476174 44476175 - C CBS Intron 0.23 TCGA-D5-6540-01 21 45655287 45655287 C T ICOSLG Missense_Mutation p.V189I 0.40 tolerated(0.14) benign(0.384) TCGA-D5-6540-01 21 45732870 45732871 CA - PFKL Frame_Shift_Del p.S146* 0.40 TCGA-D5-6540-01 21 45755498 45755498 G A C21orf2 Intron 0.26 TCGA-D5-6540-01 21 45993844 45993844 T C KRTAP10-4 Missense_Mutation p.V70A 0.27 tolerated(1) benign(0.031) TCGA-D5-6540-01 21 46313400 46313400 G T ITGB2 Silent p.T381T 0.35 TCGA-D5-6540-01 21 46355707 46355707 C A C21orf67 Missense_Mutation p.E55D 0.29 deleterious_low_confidence(0) benign(0.388) TCGA-D5-6540-01 21 46596153 46596153 T G ADARB1 Silent p.G179G 0.11 TCGA-D5-6540-01 21 46645481 46645481 G A ADARB1 3'UTR 0.40 TCGA-D5-6540-01 21 47635171 47635171 G A LSS Missense_Mutation p.R312W 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 21 47664966 47664966 C T MCM3AP Missense_Mutation p.G1598D 0.09 deleterious(0) possibly_damaging(0.786) TCGA-D5-6540-01 21 48078690 48078690 C T PRMT2 Missense_Mutation p.R230W 0.38 deleterious(0) probably_damaging(0.993) TCGA-D5-6540-01 22 17468927 17468927 C T GAB4 Silent p.P203P 0.32 TCGA-D5-6540-01 22 17468929 17468929 G A GAB4 Missense_Mutation p.P203S 0.40 tolerated(0.22) benign(0.06) TCGA-D5-6540-01 22 17489043 17489043 C T GAB4 5'UTR 0.39 TCGA-D5-6540-01 22 17956689 17956689 C T CECR2 Silent p.C21C 0.38 TCGA-D5-6540-01 22 18900725 18900725 C T PRODH Missense_Mutation p.R589Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 22 19438105 19438105 A G UFD1L 3'UTR 0.09 TCGA-D5-6540-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.30 TCGA-D5-6540-01 22 23922260 23922260 G A IGLL1 Missense_Mutation p.R40C 0.09 deleterious_low_confidence(0.03) benign(0.2) TCGA-D5-6540-01 22 24034673 24034673 G T RGL4 Missense_Mutation p.G111C 0.40 deleterious(0.01) probably_damaging(0.922) TCGA-D5-6540-01 22 24124579 24124579 C T AP000349.1 Missense_Mutation p.C212Y 0.38 unknown(0) TCGA-D5-6540-01 22 24178866 24178866 C T DERL3 Intron 0.55 TCGA-D5-6540-01 22 24982152 24982152 C T FAM211B Missense_Mutation p.G217D 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 22 24988220 24988220 G A FAM211B Intron 0.35 TCGA-D5-6540-01 22 29139967 29139967 G A HSCB Splice_Site p.X111_splice 0.31 TCGA-D5-6540-01 22 30752746 30752746 C T SF3A1 Silent p.P12P 0.46 TCGA-D5-6540-01 22 31673173 31673173 C - LIMK2 3'UTR 0.27 TCGA-D5-6540-01 22 31687049 31687049 C T PIK3IP1 Missense_Mutation p.C70Y 0.26 deleterious(0) probably_damaging(0.99) TCGA-D5-6540-01 22 31998716 31998716 C T SFI1 Missense_Mutation p.R584W 0.34 tolerated(0.08) possibly_damaging(0.785) TCGA-D5-6540-01 22 32011127 32011127 G T SFI1 Silent p.L1054L 0.41 TCGA-D5-6540-01 22 36681972 36681972 G A MYH9 Missense_Mutation p.R1697C 0.38 probably_damaging(0.946) TCGA-D5-6540-01 22 36912817 36912817 G A EIF3D Silent p.F337F 0.09 TCGA-D5-6540-01 22 37333546 37333546 C - CSF2RB Frame_Shift_Del p.S568Afs*130 0.35 TCGA-D5-6540-01 22 37769104 37769104 G - ELFN2 3'UTR 0.26 TCGA-D5-6540-01 22 37771653 37771653 C A ELFN2 5'UTR 0.39 TCGA-D5-6540-01 22 38119537 38119537 C - TRIOBP Frame_Shift_Del p.Q326Kfs*553 0.27 TCGA-D5-6540-01 22 38121802 38121802 C T TRIOBP Missense_Mutation p.T1080I 0.33 deleterious_low_confidence(0) benign(0.344) TCGA-D5-6540-01 22 38155546 38155546 G A TRIOBP Intron 0.37 TCGA-D5-6540-01 22 39176990 39176990 G A DNAL4 Missense_Mutation p.R32C 0.31 tolerated(0.1) benign(0.035) TCGA-D5-6540-01 22 39263083 39263083 G A CBX6 Missense_Mutation p.R124C 0.33 deleterious(0) probably_damaging(0.973) TCGA-D5-6540-01 22 39441136 39441136 G A APOBEC3F Missense_Mutation p.R121H 0.41 tolerated(0.06) probably_damaging(0.998) TCGA-D5-6540-01 22 40801265 40801265 G A SGSM3 Missense_Mutation p.G199S 0.46 deleterious(0.02) probably_damaging(0.927) TCGA-D5-6540-01 22 40805082 40805083 - G SGSM3 Intron 0.40 TCGA-D5-6540-01 22 41322332 41322332 C T XPNPEP3 Nonsense_Mutation p.R473* 0.31 TCGA-D5-6540-01 22 41621834 41621834 G A L3MBTL2 Missense_Mutation p.G465R 0.08 deleterious(0) probably_damaging(0.95) TCGA-D5-6540-01 22 41832459 41832459 G A TOB2 Silent p.S297S 0.24 TCGA-D5-6540-01 22 42296467 42296467 G A SREBF2 Missense_Mutation p.V958I 0.42 tolerated(0.36) benign(0.014) TCGA-D5-6540-01 22 42609532 42609532 C T TCF20 Missense_Mutation p.D594N 0.41 benign(0.022) TCGA-D5-6540-01 22 42609537 42609537 G A TCF20 Missense_Mutation p.S592L 0.32 benign(0.271) TCGA-D5-6540-01 22 42610601 42610601 A T TCF20 Silent p.S237S 0.35 TCGA-D5-6540-01 22 44385028 44385028 C T SAMM50 Silent p.G371G 0.34 TCGA-D5-6540-01 22 45724290 45724290 G A FAM118A Intron 0.45 TCGA-D5-6540-01 22 45732266 45732267 - A FAM118A Frame_Shift_Ins p.R346Tfs*7 0.27 TCGA-D5-6540-01 22 46508773 46508773 G - FLJ27365 3'UTR 0.32 TCGA-D5-6540-01 22 46654283 46654283 T - PKDREJ Frame_Shift_Del p.N1646Tfs*66 0.28 TCGA-D5-6540-01 22 47103776 47103776 C T CERK Missense_Mutation p.V227I 0.30 tolerated(0.16) benign(0.091) TCGA-D5-6540-01 22 50278045 50278045 C T ZBED4 Silent p.C245C 0.53 TCGA-D5-6540-01 22 50987349 50987349 C T KLHDC7B Nonsense_Mutation p.R252* 0.55 TCGA-D5-6540-01 22 50988099 50988099 C T KLHDC7B Missense_Mutation p.R502W 0.63 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 22 51016395 51016395 G A CPT1B Intron 0.45 TCGA-D5-6540-01 22 51064631 51064631 G A ARSA Silent p.G310G 0.30 TCGA-D5-6540-01 22 51169666 51169666 G A SHANK3 Missense_Mutation p.V1724M 0.31 probably_damaging(0.951) TCGA-D5-6540-01 2 100170918 100170918 G A AFF3 Silent p.N1163N 0.36 TCGA-D5-6540-01 2 101879132 101879132 G A CNOT11 Missense_Mutation p.G271R 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6540-01 2 103148963 103148963 G A SLC9A4 Missense_Mutation p.G738D 0.33 tolerated(0.15) benign(0.344) TCGA-D5-6540-01 2 112940489 112940489 C T FBLN7 Silent p.D264D 0.26 TCGA-D5-6540-01 2 113958771 113958771 G A PSD4 Missense_Mutation p.A984T 0.30 tolerated(0.14) benign(0.091) TCGA-D5-6540-01 2 114256830 114256830 C T FOXD4L1 5'UTR 0.50 TCGA-D5-6540-01 2 114647812 114647812 G A ACTR3 5'UTR 0.38 TCGA-D5-6540-01 2 119739083 119739083 G T MARCO Missense_Mutation p.G289C 0.38 deleterious(0) probably_damaging(0.991) TCGA-D5-6540-01 2 119752016 119752016 C A MARCO Missense_Mutation p.L495M 0.37 deleterious(0.01) unknown(0) TCGA-D5-6540-01 2 120005735 120005735 C T STEAP3 Silent p.L335L 0.08 TCGA-D5-6540-01 2 120015119 120015119 G A STEAP3 Intron 0.42 TCGA-D5-6540-01 2 122000033 122000033 C T TFCP2L1 Missense_Mutation p.D224N 0.36 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 2 125672792 125672792 C T CNTNAP5 3'UTR 0.26 TCGA-D5-6540-01 2 125672794 125672794 C T CNTNAP5 3'UTR 0.74 TCGA-D5-6540-01 2 128379624 128379624 G A MYO7B Missense_Mutation p.R1172H 0.31 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 2 128932371 128932371 C A UGGT1 Missense_Mutation p.P1160T 0.45 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 2 129026218 129026218 G A HS6ST1 Missense_Mutation p.R252C 0.07 deleterious(0) probably_damaging(0.993) TCGA-D5-6540-01 2 130872458 130872458 T - POTEF Frame_Shift_Del p.N269Tfs*20 0.33 TCGA-D5-6540-01 2 130949399 130949400 - C TUBA3E 3'UTR 0.29 TCGA-D5-6540-01 2 131688680 131688680 G T ARHGEF4 Missense_Mutation p.E50D 0.33 deleterious_low_confidence(0.05) benign(0.15) TCGA-D5-6540-01 2 131976001 131976001 C T POTEE Missense_Mutation p.P9L 0.30 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-D5-6540-01 2 132258953 132258953 T C AC093838.4 RNA 0.30 TCGA-D5-6540-01 2 132289306 132289306 A G CCDC74A Missense_Mutation p.D205G 0.09 tolerated(0.1) benign(0.411) TCGA-D5-6540-01 2 136558293 136558293 C A LCT Missense_Mutation p.D1584Y 0.35 deleterious(0) probably_damaging(0.96) TCGA-D5-6540-01 2 141108461 141108461 C T LRP1B Missense_Mutation p.D3933N 0.34 possibly_damaging(0.539) TCGA-D5-6540-01 2 141294268 141294268 G T LRP1B Silent p.S2508S 0.33 TCGA-D5-6540-01 2 16085863 16085863 C A MYCN Missense_Mutation p.Q347K 0.33 tolerated(0.5) benign(0.348) TCGA-D5-6540-01 2 163070560 163070560 G A FAP Missense_Mutation p.T297M 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 2 166179781 166179781 A G SCN2A Missense_Mutation p.D596G 0.36 deleterious(0.01) probably_damaging(0.946) TCGA-D5-6540-01 2 168920073 168920073 G T STK39 Missense_Mutation p.P438H 0.39 deleterious(0.02) benign(0.261) TCGA-D5-6540-01 2 169757948 169757948 G T G6PC2 Missense_Mutation p.R36M 0.32 deleterious(0) possibly_damaging(0.841) TCGA-D5-6540-01 2 170097684 170097684 C T LRP2 Missense_Mutation p.A1287T 0.41 benign(0.014) TCGA-D5-6540-01 2 170493022 170493022 A - PPIG Frame_Shift_Del p.N420Mfs*33 0.29 TCGA-D5-6540-01 2 171034740 171034740 T G MYO3B 5'UTR 0.10 TCGA-D5-6540-01 2 171702096 171702096 G A GAD1 Missense_Mutation p.A278T 0.37 deleterious(0.04) possibly_damaging(0.648) TCGA-D5-6540-01 2 175292710 175292710 T C SCRN3 3'UTR 0.20 TCGA-D5-6540-01 2 179414507 179414507 C T TTN Missense_Mutation p.G30648S 0.42 TCGA-D5-6540-01 2 179452805 179452805 G A TTN Missense_Mutation p.A21110V 0.78 TCGA-D5-6540-01 2 179474843 179474843 T - TTN Frame_Shift_Del p.N17137Ifs*16 0.09 TCGA-D5-6540-01 2 179479582 179479582 T A TTN Missense_Mutation p.D16251V 0.35 TCGA-D5-6540-01 2 179537209 179537209 C A TTN Splice_Site p.X11619_splice 0.40 TCGA-D5-6540-01 2 179575951 179575951 C T TTN Missense_Mutation p.G9338S 0.18 TCGA-D5-6540-01 2 179594237 179594237 C T TTN Missense_Mutation p.V6216M 0.42 TCGA-D5-6540-01 2 179615722 179615722 A - TTN Intron 0.26 TCGA-D5-6540-01 2 179640363 179640363 C T TTN Silent p.E2076E 0.05 TCGA-D5-6540-01 2 186671226 186671226 A - FSIP2 Frame_Shift_Del p.V5823Yfs*24 0.16 TCGA-D5-6540-01 2 18745363 18745363 T C NT5C1B Missense_Mutation p.E511G 0.09 deleterious(0.04) probably_damaging(0.944) TCGA-D5-6540-01 2 187626639 187626639 C T FAM171B Missense_Mutation p.R524C 0.38 tolerated(0.18) benign(0.002) TCGA-D5-6540-01 2 1946755 1946755 G A MYT1L Silent p.N168N 0.41 TCGA-D5-6540-01 2 197791350 197791350 A G PGAP1 5'UTR 0.24 TCGA-D5-6540-01 2 203242224 203242224 G A BMPR2 Nonsense_Mutation p.W9* 0.32 TCGA-D5-6540-01 2 204354665 204354665 C T RAPH1 Missense_Mutation p.R125Q 0.20 possibly_damaging(0.656) TCGA-D5-6540-01 2 207172207 207172207 C T ZDBF2 Silent p.H985H 0.38 TCGA-D5-6540-01 2 210777365 210777365 G A UNC80 Missense_Mutation p.G1556R 0.31 probably_damaging(0.999) TCGA-D5-6540-01 2 216214455 216214455 A T ATIC 3'UTR 0.33 TCGA-D5-6540-01 2 216273146 216273146 A G FN1 Missense_Mutation p.L768P 0.31 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 2 216990717 216990717 G A XRCC5 Missense_Mutation p.G254D 0.39 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 2 217526705 217526705 T C IGFBP2 Missense_Mutation p.L266P 0.36 tolerated(0.07) probably_damaging(0.964) TCGA-D5-6540-01 2 219507209 219507209 G A ZNF142 Nonsense_Mutation p.R1344* 0.39 TCGA-D5-6540-01 2 220332116 220332116 C T SPEG Silent p.D1034D 0.13 TCGA-D5-6540-01 2 220379187 220379187 G A ASIC4 Missense_Mutation p.S41N 0.41 deleterious_low_confidence(0) benign(0.213) TCGA-D5-6540-01 2 224903327 224903327 C T SERPINE2 5'UTR 0.12 TCGA-D5-6540-01 2 225244756 225244756 C T FAM124B Missense_Mutation p.S301N 0.43 tolerated(0.38) benign(0.073) TCGA-D5-6540-01 2 227663200 227663200 A C IRS1 Silent p.A85A 0.41 TCGA-D5-6540-01 2 231266124 231266124 G T SP140L Missense_Mutation p.S489I 0.13 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 2 233103275 233103275 G A DIS3L2 Missense_Mutation p.V413M 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 2 233323896 233323896 C T ALPI 3'UTR 0.62 TCGA-D5-6540-01 2 233347304 233347304 G - ECEL1 Frame_Shift_Del p.P567Hfs*48 0.37 TCGA-D5-6540-01 2 233757680 233757680 G T NGEF Missense_Mutation p.A357D 0.32 tolerated(0.21) possibly_damaging(0.543) TCGA-D5-6540-01 2 233759570 233759570 G A NGEF Silent p.L295L 0.39 TCGA-D5-6540-01 2 235950043 235950043 G A SH3BP4 Silent p.T210T 0.27 TCGA-D5-6540-01 2 238303261 238303261 A C COL6A3 Silent p.A226A 0.35 TCGA-D5-6540-01 2 239344456 239344456 G A ASB1 Missense_Mutation p.R99Q 0.31 tolerated(0.58) benign(0.019) TCGA-D5-6540-01 2 240002823 240002823 G - HDAC4 Frame_Shift_Del p.M902Wfs*55 0.22 TCGA-D5-6540-01 2 240033264 240033264 C T HDAC4 Missense_Mutation p.V641M 0.36 tolerated(0.4) benign(0.002) TCGA-D5-6540-01 2 241396078 241396078 C A AC110619.2 Translation_Start_Site p.M1? 0.37 benign(0.045) TCGA-D5-6540-01 2 241514510 241514510 A G RNPEPL1 Missense_Mutation p.Y220C 0.42 deleterious(0.01) possibly_damaging(0.87) TCGA-D5-6540-01 2 241535792 241535792 C T CAPN10 Silent p.G445G 0.22 TCGA-D5-6540-01 2 241712543 241712543 C T KIF1A Missense_Mutation p.D390N 0.39 tolerated(0.08) possibly_damaging(0.766) TCGA-D5-6540-01 2 242051779 242051779 C T PASK Missense_Mutation p.A1144T 0.34 deleterious(0) probably_damaging(0.986) TCGA-D5-6540-01 2 242169277 242169277 C T HDLBP Missense_Mutation p.A1231T 0.33 deleterious(0.01) possibly_damaging(0.893) TCGA-D5-6540-01 2 242407666 242407666 G A FARP2 Missense_Mutation p.V669I 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-D5-6540-01 2 24398436 24398436 A G FAM228A Silent p.L29L 0.31 TCGA-D5-6540-01 2 24469746 24469746 C T ITSN2 Missense_Mutation p.R1102Q 0.38 deleterious(0) unknown(0) TCGA-D5-6540-01 2 24930287 24930287 A G NCOA1 Missense_Mutation p.I650V 0.32 tolerated(0.33) benign(0.002) TCGA-D5-6540-01 2 26414471 26414471 C T HADHA Missense_Mutation p.R676H 0.39 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 2 26699079 26699079 C T OTOF Missense_Mutation p.G928D 0.38 tolerated(0.21) probably_damaging(0.994) TCGA-D5-6540-01 2 26706449 26706449 G A OTOF Nonsense_Mutation p.R425* 0.21 TCGA-D5-6540-01 2 27001184 27001184 C T SLC35F6 Silent p.S307S 0.32 TCGA-D5-6540-01 2 27663325 27663325 C A NRBP1 Silent p.A364A 0.42 TCGA-D5-6540-01 2 28761967 28761967 T C PLB1 Missense_Mutation p.V207A 0.41 deleterious(0) benign(0.253) TCGA-D5-6540-01 2 29451823 29451823 C - ALK Frame_Shift_Del p.W915Gfs*24 0.38 TCGA-D5-6540-01 2 30790959 30790959 A - LCLAT1 Frame_Shift_Del p.N222Mfs*21 0.27 TCGA-D5-6540-01 2 31360998 31360999 - C GALNT14 5'UTR 0.11 TCGA-D5-6540-01 2 3624214 3624214 C T RPS7 Silent p.I95I 0.34 TCGA-D5-6540-01 2 3691651 3691651 C T COLEC11 Silent p.D267D 0.56 TCGA-D5-6540-01 2 37289140 37289140 C T HEATR5B Silent p.R546R 0.37 TCGA-D5-6540-01 2 39171062 39171062 C A ARHGEF33 Missense_Mutation p.L271M 0.38 tolerated(0.11) possibly_damaging(0.793) TCGA-D5-6540-01 2 39283982 39283982 T C SOS1 Missense_Mutation p.H124R 0.15 tolerated(0.19) benign(0.279) TCGA-D5-6540-01 2 39944471 39944471 G A TMEM178A 3'UTR 0.39 TCGA-D5-6540-01 2 42515398 42515398 A T EML4 Missense_Mutation p.D385V 0.13 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 2 43452623 43452623 C - ZFP36L2 Frame_Shift_Del p.G107Afs*80 0.36 TCGA-D5-6540-01 2 44104981 44104981 A G ABCG8 Missense_Mutation p.S651G 0.14 tolerated(0.16) benign(0.003) TCGA-D5-6540-01 2 44128524 44128524 G A LRPPRC Silent p.L1168L 0.46 TCGA-D5-6540-01 2 44428706 44428706 T C PPM1B Missense_Mutation p.L123P 0.17 deleterious(0.01) possibly_damaging(0.78) TCGA-D5-6540-01 2 44502915 44502915 C T SLC3A1 Missense_Mutation p.R81C 0.46 tolerated(0.16) benign(0.019) TCGA-D5-6540-01 2 46611751 46611751 G A EPAS1 Silent p.T855T 0.52 TCGA-D5-6540-01 2 48066893 48066893 G A FBXO11 Missense_Mutation p.A83V 0.45 deleterious_low_confidence(0.04) benign(0.001) TCGA-D5-6540-01 2 50149282 50149282 C T NRXN1 Missense_Mutation p.A1482T 0.09 tolerated(0.09) benign(0.411) TCGA-D5-6540-01 2 50149288 50149288 C T NRXN1 Missense_Mutation p.A1480T 0.45 deleterious(0) probably_damaging(0.942) TCGA-D5-6540-01 2 50280622 50280622 C A NRXN1 Missense_Mutation p.L1345F 0.38 deleterious(0) probably_damaging(0.991) TCGA-D5-6540-01 2 54880750 54880750 G T SPTBN1 Missense_Mutation p.R1861M 0.48 deleterious(0) possibly_damaging(0.768) TCGA-D5-6540-01 2 63092029 63092029 A - EHBP1 Frame_Shift_Del p.N344Ifs*2 0.27 TCGA-D5-6540-01 2 63348979 63348979 A T WDPCP 3'UTR 0.36 TCGA-D5-6540-01 2 65571942 65571942 T C SPRED2 Missense_Mutation p.S39G 0.35 deleterious(0) possibly_damaging(0.819) TCGA-D5-6540-01 2 675594 675594 C T TMEM18 Missense_Mutation p.A32T 0.45 tolerated(0.07) possibly_damaging(0.541) TCGA-D5-6540-01 2 69601225 69601225 A G GFPT1 Missense_Mutation p.Y10H 0.26 tolerated(0.15) benign(0.097) TCGA-D5-6540-01 2 69702997 69702997 A G AAK1 3'UTR 0.30 TCGA-D5-6540-01 2 70165432 70165432 G T MXD1 3'UTR 0.28 TCGA-D5-6540-01 2 71061076 71061076 C T CD207 Missense_Mutation p.S89N 0.35 deleterious(0.01) possibly_damaging(0.848) TCGA-D5-6540-01 2 71305629 71305630 - T NAGK Frame_Shift_Ins p.S390Ffs*36 0.20 TCGA-D5-6540-01 2 72374914 72374914 G A CYP26B1 Missense_Mutation p.A17V 0.35 tolerated(0.14) benign(0.044) TCGA-D5-6540-01 2 73315283 73315283 C - RAB11FIP5 Frame_Shift_Del p.G488Vfs*25 0.28 TCGA-D5-6540-01 2 74531671 74531671 G A SLC4A5 Silent p.G72G 0.41 TCGA-D5-6540-01 2 75720542 75720542 G A EVA1A Silent p.S93S 0.36 TCGA-D5-6540-01 2 80530209 80530209 C T LRRTM1 Missense_Mutation p.A246T 0.42 tolerated(0.42) benign(0.001) TCGA-D5-6540-01 2 84668197 84668197 C T SUCLG1 Missense_Mutation p.G188D 0.12 deleterious(0) probably_damaging(0.958) TCGA-D5-6540-01 2 86333065 86333065 G - POLR1A 5'UTR 0.43 TCGA-D5-6540-01 2 86378553 86378553 T G IMMT Missense_Mutation p.K423T 0.06 deleterious(0.03) benign(0.262) TCGA-D5-6540-01 2 86398419 86398419 C T IMMT Silent p.S157S 0.38 TCGA-D5-6540-01 2 89309636 89309636 G A IGKV1-9 Missense_Mutation p.A65V 0.35 tolerated_low_confidence(0.08) benign(0.171) TCGA-D5-6540-01 2 90212131 90212131 G A IGKV3D-11 Missense_Mutation p.A75T 0.22 tolerated(0.39) benign(0.109) TCGA-D5-6540-01 2 96781640 96781640 C T ADRA2B Silent p.T83T 0.41 TCGA-D5-6540-01 2 97302676 97302676 C T KANSL3 Missense_Mutation p.R66Q 0.12 tolerated(0.14) benign(0.066) TCGA-D5-6540-01 2 97532072 97532072 G A SEMA4C Missense_Mutation p.A69V 0.41 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 2 97751572 97751572 G A FAHD2B Silent p.A183A 0.37 TCGA-D5-6540-01 2 98264525 98264525 G A COX5B Missense_Mutation p.R115H 0.13 deleterious(0.03) benign(0.005) TCGA-D5-6540-01 2 98354256 98354256 G A ZAP70 Missense_Mutation p.A507T 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 2 99156012 99156012 G A INPP4A Missense_Mutation p.R231H 0.24 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 3 108076766 108076766 A G HHLA2 Missense_Mutation p.Q254R 0.31 deleterious(0.01) benign(0.082) TCGA-D5-6540-01 3 110831032 110831032 C A PVRL3 Missense_Mutation p.H106N 0.05 tolerated(0.9) benign(0.113) TCGA-D5-6540-01 3 111997697 111997698 - T SLC9C1 Frame_Shift_Ins p.R66Kfs*29 0.28 TCGA-D5-6540-01 3 112969476 112969476 G A BOC Missense_Mutation p.V58M 0.17 tolerated(0.12) benign(0.104) TCGA-D5-6540-01 3 113723470 113723470 C T KIAA1407 Intron 0.14 TCGA-D5-6540-01 3 113775343 113775343 A C KIAA1407 5'UTR 0.52 TCGA-D5-6540-01 3 121215673 121215673 A C POLQ Missense_Mutation p.S754A 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-D5-6540-01 3 122990392 122990392 C T SEC22A Silent p.T249T 0.36 TCGA-D5-6540-01 3 123044298 123044298 C A ADCY5 Missense_Mutation p.K653N 0.39 deleterious(0.03) possibly_damaging(0.889) TCGA-D5-6540-01 3 123419538 123419538 C T MYLK Missense_Mutation p.R926H 0.42 tolerated(0.05) benign(0.019) TCGA-D5-6540-01 3 124175534 124175534 C T KALRN Silent p.H1269H 0.44 TCGA-D5-6540-01 3 124802767 124802767 G A SLC12A8 Silent p.L704L 0.46 TCGA-D5-6540-01 3 126137487 126137487 C T CCDC37 Missense_Mutation p.R174W 0.40 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 3 128614191 128614191 G A ACAD9 Missense_Mutation p.G129R 0.37 tolerated(0.35) possibly_damaging(0.595) TCGA-D5-6540-01 3 128720831 128720831 C T EFCC1 Silent p.D120D 0.45 TCGA-D5-6540-01 3 129277339 129277339 C T PLXND1 Missense_Mutation p.A1793T 0.29 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 3 130380902 130380902 C T COL6A6 Silent p.V2084V 0.41 TCGA-D5-6540-01 3 133538417 133538417 G A SRPRB Missense_Mutation p.R208H 0.36 deleterious(0.01) benign(0.042) TCGA-D5-6540-01 3 134323300 134323300 C T KY Silent p.T369T 0.13 TCGA-D5-6540-01 3 134670271 134670271 G A EPHB1 Missense_Mutation p.C61Y 0.24 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 3 137889015 137889016 - G DBR1 Frame_Shift_Ins p.Y142Lfs*2 0.28 TCGA-D5-6540-01 3 141161266 141161266 C T ZBTB38 Silent p.D12D 0.08 TCGA-D5-6540-01 3 14559361 14559361 C T GRIP2 RNA 0.55 TCGA-D5-6540-01 3 151012582 151012582 C T GPR87 Missense_Mutation p.R151Q 0.22 tolerated(0.29) possibly_damaging(0.71) TCGA-D5-6540-01 3 151150682 151150682 T - MED12L 3'UTR 0.24 TCGA-D5-6540-01 3 152554876 152554877 CA - P2RY1 3'UTR 0.28 TCGA-D5-6540-01 3 153839847 153839847 G A ARHGEF26 Silent p.S22S 0.44 TCGA-D5-6540-01 3 154146599 154146599 G A GPR149 Missense_Mutation p.P269L 0.41 tolerated(0.09) benign(0.008) TCGA-D5-6540-01 3 155640070 155640070 T - GMPS Frame_Shift_Del p.S473Lfs*26 0.28 TCGA-D5-6540-01 3 16242169 16242169 G - GALNT15 Frame_Shift_Del p.V252* 0.14 TCGA-D5-6540-01 3 168840480 168840481 CT - MECOM Frame_Shift_Del p.R165Gfs*5 0.30 TCGA-D5-6540-01 3 170011254 170011254 T C PRKCI Missense_Mutation p.S459P 0.38 tolerated(0.43) possibly_damaging(0.708) TCGA-D5-6540-01 3 178543548 178543548 T C KCNMB2 Splice_Site p.X76_splice 0.32 TCGA-D5-6540-01 3 181430208 181430208 C G SOX2 Silent p.G20G 0.37 TCGA-D5-6540-01 3 182870248 182870248 G A LAMP3 Missense_Mutation p.T268M 0.29 deleterious(0) probably_damaging(0.969) TCGA-D5-6540-01 3 182991134 182991134 A - B3GNT5 3'UTR 0.29 TCGA-D5-6540-01 3 183097179 183097179 C T MCF2L2 Missense_Mutation p.A61T 0.37 deleterious(0.03) possibly_damaging(0.703) TCGA-D5-6540-01 3 183474355 183474355 G A YEATS2 Missense_Mutation p.R477Q 0.37 deleterious_low_confidence(0.02) benign(0.082) TCGA-D5-6540-01 3 183774048 183774048 G T HTR3C Missense_Mutation p.W121C 0.34 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 3 183954249 183954249 G A VWA5B2 Missense_Mutation p.R444Q 0.45 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 3 194118181 194118181 C A GP5 Silent p.P277P 0.34 TCGA-D5-6540-01 3 195245976 195245976 T - PPP1R2 Frame_Shift_Del p.K137Sfs*6 0.27 TCGA-D5-6540-01 3 195490340 195490340 C T MUC4 Silent p.A4739A 0.47 TCGA-D5-6540-01 3 195501088 195501088 C T MUC4 Silent p.P4344P 0.17 TCGA-D5-6540-01 3 195515744 195515744 C T MUC4 Missense_Mutation p.A903T 0.39 unknown(0) TCGA-D5-6540-01 3 195711090 195711090 C T SDHAP1 RNA 0.17 TCGA-D5-6540-01 3 3118257 3118257 G A IL5RA Missense_Mutation p.T350I 0.34 tolerated(0.18) benign(0.068) TCGA-D5-6540-01 3 32032288 32032288 G A ZNF860 Missense_Mutation p.E573K 0.31 tolerated(1) benign(0.002) TCGA-D5-6540-01 3 32181797 32181797 G A GPD1L Silent p.V148V 0.28 TCGA-D5-6540-01 3 32612344 32612344 C A DYNC1LI1 5'UTR 0.43 TCGA-D5-6540-01 3 32932939 32932939 A T TRIM71 Missense_Mutation p.D748V 0.28 deleterious(0) probably_damaging(0.993) TCGA-D5-6540-01 3 33114046 33114046 C T GLB1 Missense_Mutation p.A79T 0.24 tolerated(0.17) benign(0.12) TCGA-D5-6540-01 3 33427046 33427046 G A FBXL2 Silent p.P406P 0.19 TCGA-D5-6540-01 3 36779166 36779166 G A DCLK3 Missense_Mutation p.P329S 0.34 tolerated(0.1) benign(0.051) TCGA-D5-6540-01 3 36779824 36779824 G - DCLK3 Frame_Shift_Del p.R110Gfs*69 0.31 TCGA-D5-6540-01 3 36898166 36898166 G - TRANK1 Frame_Shift_Del p.P972Qfs*12 0.28 TCGA-D5-6540-01 3 36898676 36898676 A C TRANK1 Missense_Mutation p.L802R 0.27 deleterious(0) probably_damaging(0.96) TCGA-D5-6540-01 3 37154432 37154432 A C LRRFIP2 Missense_Mutation p.S138A 0.39 tolerated(0.26) benign(0.012) TCGA-D5-6540-01 3 38521244 38521244 C T ACVR2B Nonsense_Mutation p.R296* 0.37 TCGA-D5-6540-01 3 39144278 39144278 C T GORASP1 Missense_Mutation p.R80H 0.37 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 3 40291780 40291780 G A MYRIP Missense_Mutation p.R777H 0.40 tolerated(0.22) benign(0.048) TCGA-D5-6540-01 3 42226210 42226210 G A TRAK1 Missense_Mutation p.G133S 0.22 deleterious(0) possibly_damaging(0.713) TCGA-D5-6540-01 3 42242450 42242450 C - TRAK1 Frame_Shift_Del p.R446Gfs*9 0.35 TCGA-D5-6540-01 3 44835737 44835737 G - KIF15 Frame_Shift_Del p.R223Lfs*7 0.28 TCGA-D5-6540-01 3 45136914 45136914 A C CDCP1 Missense_Mutation p.S391A 0.43 tolerated(0.39) benign(0.004) TCGA-D5-6540-01 3 46063024 46063024 C T XCR1 Missense_Mutation p.R139H 0.26 tolerated(0.05) benign(0.091) TCGA-D5-6540-01 3 46724729 46724729 G T ALS2CL Missense_Mutation p.P334T 0.37 tolerated(0.43) benign(0.003) TCGA-D5-6540-01 3 46944925 46944925 C T PTH1R Missense_Mutation p.R521C 0.52 deleterious(0) probably_damaging(0.98) TCGA-D5-6540-01 3 47164711 47164711 C T SETD2 Missense_Mutation p.R472H 0.43 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D5-6540-01 3 48419826 48419826 G A FBXW12 Missense_Mutation p.S142N 0.09 deleterious(0) possibly_damaging(0.483) TCGA-D5-6540-01 3 48511129 48511129 C T SHISA5 Missense_Mutation p.R143H 0.35 deleterious(0) probably_damaging(0.992) TCGA-D5-6540-01 3 48612792 48612792 C T COL7A1 Missense_Mutation p.A2054T 0.18 unknown(0) TCGA-D5-6540-01 3 48668730 48668730 C - SLC26A6 Frame_Shift_Del p.A305Pfs*10 0.25 TCGA-D5-6540-01 3 48671119 48671119 T C SLC26A6 Intron 0.15 TCGA-D5-6540-01 3 50396155 50396155 C - TMEM115 Frame_Shift_Del p.A114Pfs*29 0.31 TCGA-D5-6540-01 3 51127696 51127696 T G DOCK3 Missense_Mutation p.C209W 0.34 tolerated(0.17) possibly_damaging(0.766) TCGA-D5-6540-01 3 51350000 51350000 C G DOCK3 Missense_Mutation p.L1063V 0.34 tolerated(0.11) benign(0.26) TCGA-D5-6540-01 3 52395207 52395207 G T DNAH1 Silent p.L1571L 0.30 TCGA-D5-6540-01 3 52398733 52398733 T C DNAH1 Missense_Mutation p.M1775T 0.35 benign(0.15) TCGA-D5-6540-01 3 52430398 52430398 C A DNAH1 Missense_Mutation p.F3758L 0.42 probably_damaging(0.998) TCGA-D5-6540-01 3 52813451 52813451 C A ITIH1 Silent p.A138A 0.35 TCGA-D5-6540-01 3 56600689 56600690 - A CCDC66 Frame_Shift_Ins p.T207Nfs*2 0.31 TCGA-D5-6540-01 3 56789105 56789105 G - ARHGEF3 Frame_Shift_Del p.S126Rfs*44 0.31 TCGA-D5-6540-01 3 62189599 62189599 C T PTPRG Silent p.D710D 0.31 TCGA-D5-6540-01 3 66444465 66444465 G A LRIG1 Silent p.C489C 0.15 TCGA-D5-6540-01 3 69788723 69788723 C A MITF 5'UTR 0.36 TCGA-D5-6540-01 3 73433011 73433011 C T PDZRN3 Silent p.L902L 0.11 TCGA-D5-6540-01 3 7620568 7620568 C A GRM7 Silent p.R659R 0.38 TCGA-D5-6540-01 3 7620915 7620915 C T GRM7 Silent p.A774A 0.31 TCGA-D5-6540-01 3 78667096 78667096 G A ROBO1 Missense_Mutation p.T1324M 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-D5-6540-01 3 89259627 89259627 T A EPHA3 Nonsense_Mutation p.C257* 0.38 TCGA-D5-6540-01 3 95373849 95373849 C T MTHFD2P1 RNA 0.40 TCGA-D5-6540-01 3 98304382 98304382 T C CPOX Missense_Mutation p.R359G 0.38 tolerated(0.25) benign(0.057) TCGA-D5-6540-01 3 99568883 99568883 G A FILIP1L Missense_Mutation p.A546V 0.34 tolerated(0.82) possibly_damaging(0.848) TCGA-D5-6540-01 3 99649861 99649861 G A FILIP1L Missense_Mutation p.R2C 0.13 deleterious(0) possibly_damaging(0.708) TCGA-D5-6540-01 3 9989230 9989230 G A PRRT3 Silent p.L543L 0.31 TCGA-D5-6540-01 4 103718460 103718461 - A UBE2D3 3'Flank 0.29 TCGA-D5-6540-01 4 104510912 104510912 C A TACR3 Missense_Mutation p.R442M 0.42 tolerated(0.09) benign(0.172) TCGA-D5-6540-01 4 106158207 106158207 C T TET2 Silent p.H1036H 0.39 TCGA-D5-6540-01 4 110902129 110902129 C T EGF Missense_Mutation p.A790V 0.31 tolerated(0.06) benign(0.013) TCGA-D5-6540-01 4 113353357 113353357 C T ALPK1 Missense_Mutation p.A885V 0.21 tolerated(0.21) benign(0.007) TCGA-D5-6540-01 4 113538622 113538622 G A C4orf21 Missense_Mutation p.T859M 0.33 tolerated(0.15) benign(0.438) TCGA-D5-6540-01 4 11401435 11401435 G A HS3ST1 Silent p.G65G 0.37 TCGA-D5-6540-01 4 120243193 120243194 - T FABP2 Frame_Shift_Ins p.M22Nfs*4 0.30 TCGA-D5-6540-01 4 134071269 134071269 G T PCDH10 5'UTR 0.46 TCGA-D5-6540-01 4 13485808 13485809 GG - RAB28 5'UTR 0.42 TCGA-D5-6540-01 4 151168815 151168815 G A DCLK2 Silent p.P630P 0.30 TCGA-D5-6540-01 4 155191095 155191095 A - DCHS2 Frame_Shift_Del p.F1723Lfs*20 0.28 TCGA-D5-6540-01 4 155843 155843 C T ZNF718 RNA 0.08 TCGA-D5-6540-01 4 16504355 16504355 C T LDB2 Missense_Mutation p.A345T 0.38 tolerated(0.23) benign(0.004) TCGA-D5-6540-01 4 166418824 166418824 T - CPE 3'UTR 0.31 TCGA-D5-6540-01 4 1730263 1730263 G A TACC3 Silent p.P378P 0.29 TCGA-D5-6540-01 4 174449851 174449851 C A HAND2 Intron 0.45 TCGA-D5-6540-01 4 17634264 17634264 G A MED28 3'UTR 0.30 TCGA-D5-6540-01 4 17634266 17634266 T G MED28 3'UTR 0.31 TCGA-D5-6540-01 4 17710890 17710890 C A FAM184B Missense_Mutation p.Q173H 0.40 tolerated(0.2) benign(0.269) TCGA-D5-6540-01 4 177650867 177650867 G A VEGFC Missense_Mutation p.R61W 0.32 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 4 1803187 1803187 G A FGFR3 Missense_Mutation p.G180D 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-D5-6540-01 4 183063637 183063637 C T AC108142.1 RNA 0.37 TCGA-D5-6540-01 4 186544108 186544108 G A SORBS2 Silent p.N921N 0.46 TCGA-D5-6540-01 4 187557765 187557765 C T FAT1 Missense_Mutation p.A1316T 0.39 benign(0.007) TCGA-D5-6540-01 4 1944164 1944164 C T WHSC1 Intron 0.35 TCGA-D5-6540-01 4 20543106 20543106 C T SLIT2 Silent p.N669N 0.36 TCGA-D5-6540-01 4 20550137 20550137 C T SLIT2 Missense_Mutation p.T791M 0.37 tolerated(0.37) probably_damaging(0.96) TCGA-D5-6540-01 4 21699042 21699042 G A KCNIP4 Intron 0.23 TCGA-D5-6540-01 4 23797390 23797390 G A PPARGC1A 3'UTR 0.29 TCGA-D5-6540-01 4 25677935 25677935 G A SLC34A2 Missense_Mutation p.G546D 0.09 deleterious(0) possibly_damaging(0.862) TCGA-D5-6540-01 4 2831342 2831342 C - SH3BP2 Frame_Shift_Del p.P295Rfs*40 0.31 TCGA-D5-6540-01 4 30921914 30921914 C A PCDH7 Missense_Mutation p.A1105E 0.37 tolerated(0.07) possibly_damaging(0.885) TCGA-D5-6540-01 4 3319265 3319265 G A RGS12 Silent p.A456A 0.36 TCGA-D5-6540-01 4 38046058 38046058 A - TBC1D1 Frame_Shift_Del p.N498Tfs*7 0.34 TCGA-D5-6540-01 4 38775833 38775833 T G TLR10 Missense_Mutation p.K460T 0.31 deleterious(0.03) benign(0.055) TCGA-D5-6540-01 4 39304714 39304714 C T RFC1 Missense_Mutation p.G724D 0.42 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 4 52709338 52709338 G A DCUN1D4 5'UTR 0.42 TCGA-D5-6540-01 4 52869510 52869510 C A LRRC66 Missense_Mutation p.G182V 0.33 tolerated(0.08) possibly_damaging(0.565) TCGA-D5-6540-01 4 56766040 56766040 A - EXOC1 Frame_Shift_Del p.K777Nfs*2 0.24 TCGA-D5-6540-01 4 57181006 57181006 G A KIAA1211 Silent p.E446E 0.13 TCGA-D5-6540-01 4 6304343 6304343 C T WFS1 3'UTR 0.19 TCGA-D5-6540-01 4 6374427 6374427 C T PPP2R2C Missense_Mutation p.V150M 0.33 deleterious(0.01) probably_damaging(0.911) TCGA-D5-6540-01 4 6594921 6594921 C T MAN2B2 Silent p.G234G 0.28 TCGA-D5-6540-01 4 6925629 6925629 C T TBC1D14 Silent p.S171S 0.38 TCGA-D5-6540-01 4 70066181 70066181 C A UGT2B11 Missense_Mutation p.G523W 0.21 deleterious(0) possibly_damaging(0.886) TCGA-D5-6540-01 4 70146520 70146520 A G UGT2B28 Missense_Mutation p.Q101R 0.19 tolerated(0.26) benign(0.001) TCGA-D5-6540-01 4 70146740 70146740 C T UGT2B28 Silent p.F174F 0.38 TCGA-D5-6540-01 4 70146756 70146756 A G UGT2B28 Missense_Mutation p.I180V 0.37 tolerated(1) benign(0.008) TCGA-D5-6540-01 4 70146870 70146870 C A UGT2B28 Missense_Mutation p.L218I 0.33 tolerated(0.12) benign(0.11) TCGA-D5-6540-01 4 74005445 74005445 G T ANKRD17 Missense_Mutation p.P963H 0.44 possibly_damaging(0.839) TCGA-D5-6540-01 4 76522288 76522288 G A CDKL2 Missense_Mutation p.H385Y 0.34 tolerated(0.36) benign(0.001) TCGA-D5-6540-01 4 76797530 76797530 G A PPEF2 Silent p.T410T 0.33 TCGA-D5-6540-01 4 77082896 77082896 C T SCARB2 Silent p.A469A 0.44 TCGA-D5-6540-01 4 77677769 77677769 G A SHROOM3 Missense_Mutation p.G1626E 0.12 tolerated(0.12) possibly_damaging(0.717) TCGA-D5-6540-01 4 78740530 78740531 CG - CNOT6L 5'UTR 0.28 TCGA-D5-6540-01 4 79340164 79340164 A C FRAS1 Missense_Mutation p.K1496T 0.14 benign(0.001) TCGA-D5-6540-01 4 8307918 8307918 G A HTRA3 3'UTR 0.37 TCGA-D5-6540-01 4 89028360 89028360 T - ABCG2 Frame_Shift_Del p.N418Mfs*16 0.32 TCGA-D5-6540-01 4 90169863 90169863 C T GPRIN3 Missense_Mutation p.A467T 0.37 tolerated(0.09) benign(0.001) TCGA-D5-6540-01 4 96091308 96091308 T C UNC5C Missense_Mutation p.D876G 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-D5-6540-01 4 9785349 9785349 G C DRD5 3'UTR 0.12 TCGA-D5-6540-01 5 102483691 102483691 A G PPIP5K2 Silent p.S233S 0.38 TCGA-D5-6540-01 5 1038093 1038093 C T NKD2 Missense_Mutation p.P321S 0.50 tolerated(0.34) benign(0.133) TCGA-D5-6540-01 5 111594984 111594984 C T EPB41L4A Missense_Mutation p.R246Q 0.28 deleterious(0) possibly_damaging(0.757) TCGA-D5-6540-01 5 112173831 112173831 A - APC Frame_Shift_Del p.D849Ifs*12 0.32 TCGA-D5-6540-01 5 112769758 112769758 C T TSSK1B Missense_Mutation p.R260Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-D5-6540-01 5 112769815 112769815 A G TSSK1B Missense_Mutation p.L241P 0.34 deleterious(0.03) possibly_damaging(0.696) TCGA-D5-6540-01 5 112902821 112902821 C T YTHDC2 Missense_Mutation p.R959W 0.39 deleterious(0) probably_damaging(0.99) TCGA-D5-6540-01 5 118532086 118532086 C T DMXL1 Missense_Mutation p.A2493V 0.10 tolerated(0.08) probably_damaging(0.978) TCGA-D5-6540-01 5 121487751 121487751 A G ZNF474 Silent p.E22E 0.12 TCGA-D5-6540-01 5 121759270 121759270 C A SNCAIP Missense_Mutation p.L280I 0.33 tolerated(0.17) possibly_damaging(0.531) TCGA-D5-6540-01 5 122144038 122144038 C T SNX2 Missense_Mutation p.A237V 0.27 deleterious(0) possibly_damaging(0.459) TCGA-D5-6540-01 5 131539537 131539537 G T P4HA2 Silent p.S385S 0.36 TCGA-D5-6540-01 5 131931472 131931472 G A RAD50 Missense_Mutation p.R726H 0.34 deleterious(0.03) benign(0.014) TCGA-D5-6540-01 5 132061894 132061894 G A KIF3A Nonsense_Mutation p.R146* 0.32 TCGA-D5-6540-01 5 132228001 132228001 C T AFF4 Missense_Mutation p.R831Q 0.42 tolerated(0.14) probably_damaging(0.994) TCGA-D5-6540-01 5 132561420 132561420 C T FSTL4 Missense_Mutation p.M369I 0.37 tolerated(0.26) benign(0.1) TCGA-D5-6540-01 5 132561462 132561462 T C FSTL4 Silent p.G355G 0.36 TCGA-D5-6540-01 5 133295361 133295361 C T C5orf15 Missense_Mutation p.E164K 0.37 tolerated(0.07) benign(0.033) TCGA-D5-6540-01 5 133541549 133541549 A G PPP2CA Intron 0.35 TCGA-D5-6540-01 5 134010461 134010461 C G SEC24A Missense_Mutation p.T325S 0.39 tolerated(0.84) benign(0.001) TCGA-D5-6540-01 5 134343699 134343699 T C CATSPER3 Missense_Mutation p.L182P 0.38 deleterious(0.01) possibly_damaging(0.761) TCGA-D5-6540-01 5 138729538 138729538 C T PROB1 Silent p.S411S 0.40 TCGA-D5-6540-01 5 139260460 139260460 G A NRG2 Silent p.G324G 0.37 TCGA-D5-6540-01 5 139266959 139266959 T C NRG2 Missense_Mutation p.S280G 0.33 tolerated(0.26) benign(0.09) TCGA-D5-6540-01 5 139680082 139680082 G A PFDN1 Missense_Mutation p.T40M 0.38 tolerated(0.09) benign(0.045) TCGA-D5-6540-01 5 140073242 140073242 A C HARS2 Missense_Mutation p.T59P 0.08 deleterious(0.01) benign(0.05) TCGA-D5-6540-01 5 140182108 140182108 C A PCDHA3 Silent p.S442S 0.06 TCGA-D5-6540-01 5 140237416 140237416 G A PCDHA10 Missense_Mutation p.A595T 0.46 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-D5-6540-01 5 140433407 140433407 T - PCDHB1 Frame_Shift_Del p.E786Rfs*2 0.30 TCGA-D5-6540-01 5 140482199 140482199 G A PCDHB3 Missense_Mutation p.A656T 0.50 deleterious_low_confidence(0.01) benign(0.105) TCGA-D5-6540-01 5 140574261 140574261 G A PCDHB10 Silent p.A712A 0.58 TCGA-D5-6540-01 5 140596907 140596907 T - PCDHB13 3'UTR 0.28 TCGA-D5-6540-01 5 140711018 140711018 C T PCDHGA1 Missense_Mutation p.P256L 0.38 deleterious_low_confidence(0.01) benign(0.262) TCGA-D5-6540-01 5 140712338 140712338 C T PCDHGA1 Missense_Mutation p.A696V 0.13 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-D5-6540-01 5 140789114 140789114 G A PCDHGB6 Missense_Mutation p.A449T 0.38 tolerated(0.07) benign(0.133) TCGA-D5-6540-01 5 140801569 140801569 G A PCDHGA11 Missense_Mutation p.G259R 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D5-6540-01 5 140811967 140811967 G A PCDHGA12 Silent p.S547S 0.46 TCGA-D5-6540-01 5 141233992 141233992 G T PCDH1 Missense_Mutation p.P1110H 0.34 deleterious(0.04) possibly_damaging(0.847) TCGA-D5-6540-01 5 141511814 141511815 - C NDFIP1 Frame_Shift_Ins p.S66Ifs*12 0.34 TCGA-D5-6540-01 5 14374421 14374421 G A TRIO Silent p.T1100T 0.08 TCGA-D5-6540-01 5 145428791 145428791 C T SH3RF2 Silent p.Y435Y 0.31 TCGA-D5-6540-01 5 145834754 145834754 G A TCERG1 Silent p.P65P 0.41 TCGA-D5-6540-01 5 14681646 14681646 C T FAM105B Missense_Mutation p.A133V 0.12 deleterious(0) probably_damaging(0.984) TCGA-D5-6540-01 5 149403964 149403964 C T HMGXB3 Missense_Mutation p.S394L 0.45 deleterious(0.01) benign(0.008) TCGA-D5-6540-01 5 149900985 149900985 G - NDST1 Frame_Shift_Del p.D58Tfs*121 0.44 TCGA-D5-6540-01 5 150158496 150158496 C A AC010441.1 Missense_Mutation p.P122H 0.37 probably_damaging(0.95) TCGA-D5-6540-01 5 150310497 150310497 G A ZNF300P1 RNA 0.25 TCGA-D5-6540-01 5 150515865 150515865 G A ANXA6 Silent p.I147I 0.35 TCGA-D5-6540-01 5 151170505 151170505 G A G3BP1 Missense_Mutation p.R78H 0.34 deleterious(0.03) benign(0.001) TCGA-D5-6540-01 5 151784556 151784556 C T NMUR2 Missense_Mutation p.R40Q 0.36 tolerated(0.5) benign(0.007) TCGA-D5-6540-01 5 154396908 154396908 C A KIF4B Silent p.T1163T 0.32 TCGA-D5-6540-01 5 15937257 15937257 C T FBXL7 Missense_Mutation p.R480C 0.48 deleterious(0) possibly_damaging(0.892) TCGA-D5-6540-01 5 159519307 159519307 G A PWWP2A 3'UTR 0.41 TCGA-D5-6540-01 5 161322742 161322742 T C GABRA1 Silent p.Y309Y 0.32 TCGA-D5-6540-01 5 167891718 167891718 G A WWC1 Silent p.P973P 0.40 TCGA-D5-6540-01 5 168690634 168690634 G A SLIT3 Intron 0.38 TCGA-D5-6540-01 5 175111077 175111077 T A HRH2 Missense_Mutation p.S281T 0.29 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 5 176003134 176003134 C - CDHR2 Frame_Shift_Del p.R383Afs*51 0.28 TCGA-D5-6540-01 5 176025661 176025661 G A GPRIN1 Missense_Mutation p.T392M 0.40 tolerated(0.42) benign(0.016) TCGA-D5-6540-01 5 176084767 176084767 G A TSPAN17 3'UTR 0.35 TCGA-D5-6540-01 5 176825198 176825198 C - SLC34A1 Frame_Shift_Del p.R613Gfs*69 0.33 TCGA-D5-6540-01 5 176893990 176893990 C T DBN1 Missense_Mutation p.R212Q 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6540-01 5 177035971 177035971 G T B4GALT7 Missense_Mutation p.A262S 0.17 tolerated(0.44) benign(0.437) TCGA-D5-6540-01 5 177649565 177649565 C T PHYKPL Missense_Mutation p.G240R 0.19 deleterious(0) probably_damaging(0.992) TCGA-D5-6540-01 5 178040808 178040809 - T CLK4 Frame_Shift_Ins p.N193Kfs*7 0.25 TCGA-D5-6540-01 5 178140589 178140589 G A ZNF354A Missense_Mutation p.T97M 0.31 deleterious(0.03) benign(0.069) TCGA-D5-6540-01 5 178310892 178310892 C T ZNF354B Missense_Mutation p.A480V 0.30 tolerated(0.3) probably_damaging(0.931) TCGA-D5-6540-01 5 178359422 178359422 A G ZFP2 Missense_Mutation p.T370A 0.34 tolerated(0.48) benign(0.208) TCGA-D5-6540-01 5 178579173 178579173 G - ADAMTS2 Frame_Shift_Del p.L534Wfs*20 0.29 TCGA-D5-6540-01 5 179079070 179079070 G A AC136604.1 Missense_Mutation p.A185T 0.40 tolerated(0.76) benign(0.002) TCGA-D5-6540-01 5 180166230 180166230 A - OR2Y1 Frame_Shift_Del p.Y277Ifs*3 0.27 TCGA-D5-6540-01 5 180277826 180277826 C T ZFP62 Silent p.K223K 0.47 TCGA-D5-6540-01 5 180486696 180486696 C T BTNL9 Missense_Mutation p.A481V 0.43 deleterious(0.03) benign(0.243) TCGA-D5-6540-01 5 180684390 180684390 G A TRIM52 3'UTR 0.37 TCGA-D5-6540-01 5 34008111 34008111 C A AMACR Missense_Mutation p.G5V 0.35 deleterious(0) probably_damaging(0.991) TCGA-D5-6540-01 5 3600306 3600306 C G IRX1 Missense_Mutation p.P415R 0.47 tolerated(0.3) benign(0.096) TCGA-D5-6540-01 5 3600329 3600329 C A IRX1 Missense_Mutation p.L423I 0.55 tolerated(0.12) benign(0.004) TCGA-D5-6540-01 5 36124306 36124306 G A LMBRD2 Missense_Mutation p.T270I 0.08 tolerated(0.08) benign(0.02) TCGA-D5-6540-01 5 38904607 38904607 T A OSMR Splice_Site p.X429_splice 0.27 TCGA-D5-6540-01 5 41052617 41052617 G A MROH2B Missense_Mutation p.P394S 0.38 tolerated(0.15) benign(0.03) TCGA-D5-6540-01 5 43487052 43487052 C T C5orf34 Missense_Mutation p.D628N 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 5 54581631 54581631 A C DHX29 Silent p.T375T 0.34 TCGA-D5-6540-01 5 5461491 5461491 A G KIAA0947 Missense_Mutation p.T682A 0.38 tolerated(0.29) benign(0.023) TCGA-D5-6540-01 5 61669589 61669589 T C KIF2A Silent p.I612I 0.34 TCGA-D5-6540-01 5 70671642 70671643 - A RP11-136K7.2 Intron 0.71 TCGA-D5-6540-01 5 72189281 72189281 C T TNPO1 Silent p.G658G 0.11 TCGA-D5-6540-01 5 74324983 74324983 G - GCNT4 Frame_Shift_Del p.H294Ifs*14 0.31 TCGA-D5-6540-01 5 75913449 75913449 C T F2RL2 Missense_Mutation p.M361I 0.39 tolerated(0.09) benign(0.138) TCGA-D5-6540-01 5 76028204 76028204 T C F2R Missense_Mutation p.Y52H 0.40 tolerated(0.41) benign(0.423) TCGA-D5-6540-01 5 78260426 78260426 T C ARSB Missense_Mutation p.Y168C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6540-01 5 78347130 78347130 T A DMGDH Missense_Mutation p.N242I 0.39 tolerated(0.09) possibly_damaging(0.555) TCGA-D5-6540-01 5 79755270 79755270 A - ZFYVE16 Frame_Shift_Del p.T1329Hfs*11 0.26 TCGA-D5-6540-01 5 80550934 80550934 C T CKMT2 Silent p.N190N 0.35 TCGA-D5-6540-01 5 81460216 81460216 A - ATG10 Splice_Site p.X73_splice 0.23 TCGA-D5-6540-01 5 93999556 93999556 G T ANKRD32 Missense_Mutation p.Q437H 0.15 tolerated(0.07) benign(0.189) TCGA-D5-6540-01 5 94134726 94134726 G A MCTP1 Missense_Mutation p.R850C 0.35 deleterious(0.03) probably_damaging(0.917) TCGA-D5-6540-01 5 95011141 95011141 G A SPATA9 Missense_Mutation p.P118L 0.40 deleterious(0) possibly_damaging(0.579) TCGA-D5-6540-01 6 100062293 100062293 G A PRDM13 Silent p.T594T 0.44 TCGA-D5-6540-01 6 105225086 105225086 T C HACE1 Missense_Mutation p.H558R 0.31 tolerated(1) benign(0.004) TCGA-D5-6540-01 6 106536080 106536080 C - PRDM1 Frame_Shift_Del p.K18Sfs*7 0.31 TCGA-D5-6540-01 6 109980445 109980445 G C AK9 Missense_Mutation p.Q206E 0.39 tolerated(1) benign(0.022) TCGA-D5-6540-01 6 11190701 11190701 C A NEDD9 Missense_Mutation p.K467N 0.37 deleterious(0) possibly_damaging(0.707) TCGA-D5-6540-01 6 112382397 112382397 A C WISP3 Missense_Mutation p.E102D 0.36 tolerated(0.61) benign(0.004) TCGA-D5-6540-01 6 116836954 116836954 T - FAM26E Frame_Shift_Del p.F246Lfs*75 0.29 TCGA-D5-6540-01 6 11766564 11766564 A T ADTRP Missense_Mutation p.D129E 0.40 tolerated(1) benign(0.002) TCGA-D5-6540-01 6 119300599 119300599 G A FAM184A Missense_Mutation p.R796W 0.39 deleterious(0) probably_damaging(0.994) TCGA-D5-6540-01 6 130762851 130762851 G T TMEM200A Missense_Mutation p.K428N 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-D5-6540-01 6 13206259 13206259 G A PHACTR1 Missense_Mutation p.G293S 0.44 tolerated(1) probably_damaging(0.935) TCGA-D5-6540-01 6 133135894 133135894 C A RPS12 5'UTR 0.13 TCGA-D5-6540-01 6 134492054 134492054 C G SGK1 Splice_Site p.X442_splice 0.40 TCGA-D5-6540-01 6 135507100 135507100 G T MYB Missense_Mutation p.G28V 0.12 tolerated(0.41) probably_damaging(0.985) TCGA-D5-6540-01 6 136742892 136742892 C T MAP7 Missense_Mutation p.R60H 0.35 tolerated_low_confidence(0.07) benign(0.104) TCGA-D5-6540-01 6 136923079 136923079 G A MAP3K5 Silent p.S906S 0.30 TCGA-D5-6540-01 6 138893177 138893177 G A NHSL1 5'UTR 0.40 TCGA-D5-6540-01 6 146720569 146720569 G T GRM1 Missense_Mutation p.W798C 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 6 146988010 146988010 G T ADGB Nonsense_Mutation p.G271* 0.34 TCGA-D5-6540-01 6 147680300 147680300 G A STXBP5 Missense_Mutation p.A796T 0.11 tolerated(0.37) benign(0.002) TCGA-D5-6540-01 6 152605134 152605134 C T SYNE1 Silent p.S6062S 0.35 TCGA-D5-6540-01 6 153019117 153019117 T - MYCT1 Frame_Shift_Del p.F29Sfs*28 0.17 TCGA-D5-6540-01 6 158924047 158924047 C T TULP4 Missense_Mutation p.R1118W 0.55 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D5-6540-01 6 159065725 159065725 C T DYNLT1 Missense_Mutation p.A6T 0.53 tolerated(0.64) benign(0.001) TCGA-D5-6540-01 6 160198414 160198414 A G ACAT2 Missense_Mutation p.I280V 0.33 tolerated(0.07) benign(0.056) TCGA-D5-6540-01 6 160499303 160499303 C A IGF2R Missense_Mutation p.P1796H 0.38 tolerated(0.05) probably_damaging(0.991) TCGA-D5-6540-01 6 160963770 160963770 C - LPA Frame_Shift_Del p.C1824Vfs*27 0.25 TCGA-D5-6540-01 6 161966249 161966249 A - PARK2 Intron 0.53 TCGA-D5-6540-01 6 163235223 163235224 - A PACRG Frame_Shift_Ins p.P69Afs*9 0.21 TCGA-D5-6540-01 6 169632165 169632165 G A THBS2 Silent p.D687D 0.33 TCGA-D5-6540-01 6 170047945 170047945 G A WDR27 Silent p.C527C 0.19 TCGA-D5-6540-01 6 170173489 170173490 - A ERMARD Frame_Shift_Ins p.Q439Tfs*6 0.31 TCGA-D5-6540-01 6 17421836 17421836 G A CAP2 Missense_Mutation p.R17H 0.32 deleterious(0.02) probably_damaging(1) TCGA-D5-6540-01 6 24445828 24445828 C T GPLD1 Missense_Mutation p.V656I 0.37 tolerated(0.42) benign(0.063) TCGA-D5-6540-01 6 25538149 25538149 G A LRRC16A Missense_Mutation p.A712T 0.32 tolerated(0.2) benign(0.003) TCGA-D5-6540-01 6 25813137 25813137 C T SLC17A1 Silent p.T273T 0.29 TCGA-D5-6540-01 6 26018017 26018017 A - HIST1H1A 5'UTR 0.36 TCGA-D5-6540-01 6 26240705 26240705 C T HIST1H4F Missense_Mutation p.R18C 0.38 tolerated(0.08) unknown(0) TCGA-D5-6540-01 6 26285482 26285482 C T HIST1H4H Silent p.V82V 0.42 TCGA-D5-6540-01 6 26385309 26385309 G A BTN2A2 Missense_Mutation p.R54H 0.48 tolerated(0.47) benign(0.021) TCGA-D5-6540-01 6 27277090 27277090 A - POM121L2 Frame_Shift_Del p.S954Pfs*? 0.11 TCGA-D5-6540-01 6 28194986 28194986 C T ZSCAN9 Missense_Mutation p.R42C 0.37 tolerated(0.1) benign(0.003) TCGA-D5-6540-01 6 28212908 28212908 T - ZKSCAN4 Frame_Shift_Del p.T542Lfs*27 0.29 TCGA-D5-6540-01 6 28540866 28540866 A - SCAND3 Frame_Shift_Del p.S934Qfs*17 0.32 TCGA-D5-6540-01 6 29364418 29364418 C T OR12D2 5'UTR 0.35 TCGA-D5-6540-01 6 29364817 29364817 C T OR12D2 Missense_Mutation p.A114V 0.20 deleterious(0) possibly_damaging(0.616) TCGA-D5-6540-01 6 29429510 29429510 A G OR2H1 5'UTR 0.35 TCGA-D5-6540-01 6 30153888 30153888 G A TRIM26 Missense_Mutation p.A462V 0.15 deleterious(0.02) unknown(0) TCGA-D5-6540-01 6 30520253 30520253 C T GNL1 Missense_Mutation p.G364S 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6540-01 6 30530209 30530209 C T PRR3 Silent p.G168G 0.43 TCGA-D5-6540-01 6 30652245 30652245 G A PPP1R18 Silent p.G517G 0.38 TCGA-D5-6540-01 6 30692127 30692127 G A TUBB Missense_Mutation p.A430T 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-D5-6540-01 6 31829855 31829855 G A NEU1 Silent p.L91L 0.33 TCGA-D5-6540-01 6 31896524 31896524 C T CFB Intron 0.38 TCGA-D5-6540-01 6 32709276 32709276 G A HLA-DQA2 Missense_Mutation p.S19N 0.37 tolerated(0.09) benign(0.049) TCGA-D5-6540-01 6 33052934 33052934 C - HLA-DPB1 Frame_Shift_Del p.Q193Sfs*35 0.25 TCGA-D5-6540-01 6 33175651 33175651 C A SLC39A7 3'Flank 0.07 TCGA-D5-6540-01 6 33289694 33289694 G A DAXX Silent p.T3T 0.35 TCGA-D5-6540-01 6 33660616 33660616 C T ITPR3 Missense_Mutation p.R2524C 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 6 33703074 33703074 C T IP6K3 Silent p.R60R 0.23 TCGA-D5-6540-01 6 36343801 36343801 C T ETV7 Missense_Mutation p.A52T 0.26 tolerated(0.29) benign(0.048) TCGA-D5-6540-01 6 36807165 36807165 C - CPNE5 5'UTR 0.30 TCGA-D5-6540-01 6 38980250 38980250 G A DNAH8 Missense_Mutation p.M4300I 0.36 benign(0.074) TCGA-D5-6540-01 6 39272281 39272281 C - KCNK17 Frame_Shift_Del p.G168Afs*61 0.30 TCGA-D5-6540-01 6 40360065 40360065 G T LRFN2 Missense_Mutation p.L663M 0.34 tolerated(0.09) benign(0.184) TCGA-D5-6540-01 6 42214194 42214194 C A TRERF1 Missense_Mutation p.M915I 0.44 deleterious(0) benign(0.019) TCGA-D5-6540-01 6 42609391 42609391 C T UBR2 Silent p.A664A 0.39 TCGA-D5-6540-01 6 42893275 42893275 G - PTCRA Frame_Shift_Del p.E236Kfs*59 0.28 TCGA-D5-6540-01 6 42933085 42933085 G A PEX6 Silent p.A831A 0.40 TCGA-D5-6540-01 6 43324939 43324939 C G ZNF318 Missense_Mutation p.E371D 0.30 benign(0.045) TCGA-D5-6540-01 6 43514488 43514488 A G XPO5 Missense_Mutation p.M721T 0.38 deleterious(0.01) benign(0.024) TCGA-D5-6540-01 6 46826407 46826407 C T GPR116 Missense_Mutation p.R1078H 0.27 tolerated(1) benign(0.001) TCGA-D5-6540-01 6 49437917 49437917 A - CENPQ Frame_Shift_Del p.N11Tfs*5 0.16 TCGA-D5-6540-01 6 51882409 51882409 C T PKHD1 Missense_Mutation p.C1800Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 6 56417000 56417000 C A DST Missense_Mutation p.Q2907H 0.32 benign(0.346) TCGA-D5-6540-01 6 56918833 56918833 T G KIAA1586 Silent p.G512G 0.39 TCGA-D5-6540-01 6 64499019 64499019 G T EYS Missense_Mutation p.P2504T 0.27 deleterious(0.04) possibly_damaging(0.608) TCGA-D5-6540-01 6 74063632 74063632 C T DPPA5 Missense_Mutation p.R79Q 0.23 tolerated(0.23) benign(0.098) TCGA-D5-6540-01 6 74475745 74475745 G A CD109 Silent p.E400E 0.33 TCGA-D5-6540-01 6 75884903 75884903 C - COL12A1 Frame_Shift_Del p.G854Vfs*8 0.33 TCGA-D5-6540-01 6 76024353 76024353 T C FILIP1 Missense_Mutation p.K399E 0.35 deleterious(0) probably_damaging(0.963) TCGA-D5-6540-01 6 79707227 79707227 T A PHIP Missense_Mutation p.H702L 0.36 deleterious(0.05) possibly_damaging(0.888) TCGA-D5-6540-01 6 83947483 83947483 C T ME1 Missense_Mutation p.A327T 0.27 tolerated(0.09) probably_damaging(0.975) TCGA-D5-6540-01 6 88854141 88854141 C T CNR1 Missense_Mutation p.V285I 0.31 tolerated(0.61) benign(0.016) TCGA-D5-6540-01 6 90358034 90358034 A G MDN1 Silent p.S5407S 0.37 TCGA-D5-6540-01 6 96973198 96973198 T C UFL1 Missense_Mutation p.I93T 0.34 deleterious(0) possibly_damaging(0.861) TCGA-D5-6540-01 7 100029127 100029127 C T MEPCE Missense_Mutation p.R496C 0.37 deleterious(0.02) possibly_damaging(0.838) TCGA-D5-6540-01 7 100085946 100085946 G A NYAP1 Missense_Mutation p.R201Q 0.40 tolerated(0.71) benign(0.049) TCGA-D5-6540-01 7 100680700 100680700 G T MUC17 Missense_Mutation p.E2001D 0.32 probably_damaging(0.989) TCGA-D5-6540-01 7 103969628 103969628 C T LHFPL3 Missense_Mutation p.T134M 0.35 deleterious(0.01) possibly_damaging(0.549) TCGA-D5-6540-01 7 105254754 105254754 T - ATXN7L1 Frame_Shift_Del p.K676Rfs*5 0.42 TCGA-D5-6540-01 7 106826828 106826828 G A HBP1 Missense_Mutation p.G188D 0.30 tolerated(0.1) benign(0.062) TCGA-D5-6540-01 7 108524583 108524583 C A C7orf66 Missense_Mutation p.A3S 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.866) TCGA-D5-6540-01 7 117292916 117292916 A G CFTR Silent p.G1298G 0.44 TCGA-D5-6540-01 7 117351404 117351405 AA - CTTNBP2 3'UTR 0.38 TCGA-D5-6540-01 7 122338254 122338254 C T RNF133 Missense_Mutation p.R240Q 0.32 deleterious(0.02) possibly_damaging(0.669) TCGA-D5-6540-01 7 128478481 128478481 C T FLNC Missense_Mutation p.A403V 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6540-01 7 129351322 129351322 C T NRF1 Missense_Mutation p.T324M 0.37 deleterious(0.04) benign(0.132) TCGA-D5-6540-01 7 130001077 130001077 G C CPA5 Missense_Mutation p.V176L 0.33 tolerated(0.14) benign(0.073) TCGA-D5-6540-01 7 134849200 134849200 G A TMEM140 Missense_Mutation p.G3S 0.33 tolerated(0.86) benign(0.001) TCGA-D5-6540-01 7 135303167 135303167 G A NUP205 Missense_Mutation p.S1260N 0.36 tolerated(0.91) benign(0.002) TCGA-D5-6540-01 7 139257874 139257874 C T HIPK2 Silent p.Q1132Q 0.45 TCGA-D5-6540-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-D5-6540-01 7 141364765 141364765 G A KIAA1147 Nonsense_Mutation p.Q348* 0.35 TCGA-D5-6540-01 7 141385359 141385359 G A KIAA1147 Missense_Mutation p.A149V 0.33 tolerated(0.15) benign(0.345) TCGA-D5-6540-01 7 142566075 142566075 C T EPHB6 Silent p.V665V 0.31 TCGA-D5-6540-01 7 143090869 143090869 G A EPHA1 Missense_Mutation p.A864V 0.37 tolerated(0.08) benign(0.052) TCGA-D5-6540-01 7 1477771 1477771 C T MICALL2 Missense_Mutation p.G758D 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 7 148080915 148080915 C T CNTNAP2 Missense_Mutation p.S1217L 0.40 tolerated(0.29) benign(0.005) TCGA-D5-6540-01 7 148771614 148771614 T - ZNF786 Frame_Shift_Del p.K54Nfs*4 0.28 TCGA-D5-6540-01 7 148951012 148951012 G A ZNF212 Missense_Mutation p.A332T 0.37 tolerated(1) benign(0.058) TCGA-D5-6540-01 7 149559496 149559496 G A ZNF862 Missense_Mutation p.A1083T 0.43 deleterious(0.03) probably_damaging(0.998) TCGA-D5-6540-01 7 150094897 150094897 C T ZNF775 Missense_Mutation p.P443L 0.50 tolerated(0.26) benign(0.062) TCGA-D5-6540-01 7 150932389 150932389 C T CHPF2 Silent p.A173A 0.31 TCGA-D5-6540-01 7 151106527 151106527 C T WDR86 Missense_Mutation p.C50Y 0.55 tolerated(0.99) probably_damaging(0.938) TCGA-D5-6540-01 7 154684263 154684263 C A DPP6 3'UTR 0.21 TCGA-D5-6540-01 7 15725675 15725675 G - MEOX2 Frame_Shift_Del p.P118Qfs*98 0.50 TCGA-D5-6540-01 7 157449122 157449122 C T PTPRN2 Missense_Mutation p.R708H 0.39 tolerated(0.3) probably_damaging(0.999) TCGA-D5-6540-01 7 17378922 17378922 T A AHR Missense_Mutation p.N491K 0.43 tolerated(0.23) benign(0.071) TCGA-D5-6540-01 7 17879498 17879498 T G SNX13 Missense_Mutation p.T431P 0.07 tolerated(0.34) benign(0.002) TCGA-D5-6540-01 7 19156320 19156321 - G TWIST1 3'UTR 0.32 TCGA-D5-6540-01 7 19156404 19156404 C T TWIST1 Missense_Mutation p.E181K 0.44 deleterious(0) probably_damaging(0.957) TCGA-D5-6540-01 7 2564891 2564891 C T LFNG Missense_Mutation p.R174C 0.44 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 7 27147873 27147873 C T HOXA3 Silent p.A331A 0.40 TCGA-D5-6540-01 7 2752273 2752273 C T AMZ1 Missense_Mutation p.R420W 0.13 deleterious(0) possibly_damaging(0.908) TCGA-D5-6540-01 7 27831847 27831847 C A TAX1BP1 Missense_Mutation p.Q421K 0.40 tolerated(0.3) possibly_damaging(0.723) TCGA-D5-6540-01 7 29724431 29724431 T C MIR550A3 5'Flank 0.60 TCGA-D5-6540-01 7 32338309 32338309 T - PDE1C Frame_Shift_Del p.K13Nfs*16 0.37 TCGA-D5-6540-01 7 32338360 32338360 C T PDE1C 5'UTR 0.45 TCGA-D5-6540-01 7 33014915 33014915 C A FKBP9 Silent p.I163I 0.10 TCGA-D5-6540-01 7 40488906 40488906 C T SUGCT Silent p.G286G 0.31 TCGA-D5-6540-01 7 42950098 42950098 C A C7orf25 Missense_Mutation p.R192S 0.32 deleterious(0.02) possibly_damaging(0.652) TCGA-D5-6540-01 7 44578792 44578792 C T NPC1L1 Missense_Mutation p.G402S 0.38 deleterious(0.03) possibly_damaging(0.701) TCGA-D5-6540-01 7 45125140 45125140 G - NACAD Frame_Shift_Del p.A214Pfs*92 0.38 TCGA-D5-6540-01 7 45699685 45699685 A G ADCY1 Missense_Mutation p.D451G 0.41 deleterious(0) possibly_damaging(0.74) TCGA-D5-6540-01 7 47860746 47860746 A - PKD1L1 Frame_Shift_Del p.L2298Cfs*3 0.23 TCGA-D5-6540-01 7 47944209 47944209 C T PKD1L1 Missense_Mutation p.R566H 0.33 tolerated(0.96) benign(0.003) TCGA-D5-6540-01 7 4801850 4801850 G T FOXK1 Missense_Mutation p.A653S 0.27 deleterious(0.01) probably_damaging(0.972) TCGA-D5-6540-01 7 48146556 48146556 C T UPP1 Missense_Mutation p.R175W 0.35 deleterious(0.02) possibly_damaging(0.749) TCGA-D5-6540-01 7 48318341 48318341 C A ABCA13 Missense_Mutation p.T2517K 0.36 benign(0.018) TCGA-D5-6540-01 7 5036692 5036692 A C RNF216P1 RNA 0.39 TCGA-D5-6540-01 7 5340145 5340145 C T SLC29A4 Silent p.C434C 0.33 TCGA-D5-6540-01 7 5347818 5347818 C A TNRC18 Missense_Mutation p.E2942D 0.40 unknown(0) TCGA-D5-6540-01 7 5541092 5541092 G A FBXL18 Missense_Mutation p.P270S 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-D5-6540-01 7 55752878 55752878 A T RNU6-389P 5'Flank 0.38 TCGA-D5-6540-01 7 6730369 6730369 G A ZNF12 3'UTR 0.44 TCGA-D5-6540-01 7 70886008 70886008 C T WBSCR17 Silent p.H293H 0.13 TCGA-D5-6540-01 7 72861623 72861625 TCC - BAZ1B In_Frame_Del p.E1273del 0.29 TCGA-D5-6540-01 7 73609667 73609667 G T EIF4H 3'UTR 0.38 TCGA-D5-6540-01 7 7677505 7677505 G A RPA3 Silent p.S91S 0.31 TCGA-D5-6540-01 7 77408706 77408706 A - RSBN1L 3'UTR 0.40 TCGA-D5-6540-01 7 82579778 82579778 C T PCLO Missense_Mutation p.V3376I 0.38 unknown(0) TCGA-D5-6540-01 7 84644455 84644455 G A SEMA3D Silent p.C541C 0.33 TCGA-D5-6540-01 7 88962969 88962969 A - ZNF804B Frame_Shift_Del p.V227Cfs*3 0.23 TCGA-D5-6540-01 7 89933287 89933287 A - C7orf63 Frame_Shift_Del p.K687Nfs*43 0.37 TCGA-D5-6540-01 7 92158179 92158179 A G RBM48 Missense_Mutation p.R18G 0.19 deleterious(0.02) benign(0.005) TCGA-D5-6540-01 7 93516175 93516175 C T TFPI2 Missense_Mutation p.R222H 0.45 tolerated(0.39) benign(0.05) TCGA-D5-6540-01 7 98941943 98941943 G A ARPC1A Missense_Mutation p.R66H 0.33 deleterious(0.02) benign(0.088) TCGA-D5-6540-01 7 99705011 99705011 G - TAF6 Frame_Shift_Del p.P668Rfs*? 0.30 TCGA-D5-6540-01 7 99757888 99757888 C T GAL3ST4 Missense_Mutation p.R375H 0.39 tolerated(0.15) benign(0.035) TCGA-D5-6540-01 7 99817848 99817848 G - PVRIG Frame_Shift_Del p.G79Afs*245 0.22 TCGA-D5-6540-01 7 99950305 99950305 C G PILRB Intron 0.32 TCGA-D5-6540-01 7 99997579 99997579 C T PILRA 3'UTR 0.24 TCGA-D5-6540-01 8 101020648 101020648 C T RGS22 Silent p.E772E 0.08 TCGA-D5-6540-01 8 104240414 104240414 G T BAALC 3'UTR 0.33 TCGA-D5-6540-01 8 108315508 108315508 A G ANGPT1 Missense_Mutation p.I299T 0.51 deleterious(0.02) benign(0.089) TCGA-D5-6540-01 8 110255472 110255472 C T NUDCD1 Silent p.S506S 0.58 TCGA-D5-6540-01 8 11188669 11188669 G A SLC35G5 Silent p.P18P 0.31 TCGA-D5-6540-01 8 113275907 113275907 C A CSMD3 Missense_Mutation p.G3275W 0.26 deleterious(0) probably_damaging(0.994) TCGA-D5-6540-01 8 113960039 113960039 C A CSMD3 Missense_Mutation p.K496N 0.34 deleterious(0.01) possibly_damaging(0.777) TCGA-D5-6540-01 8 116430646 116430646 C T TRPS1 Missense_Mutation p.C912Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 8 124383475 124383477 CTT - ATAD2 Splice_Site p.X213_splice 0.22 TCGA-D5-6540-01 8 124696873 124696873 G A ANXA13 Missense_Mutation p.R311C 0.58 deleterious(0) possibly_damaging(0.873) TCGA-D5-6540-01 8 124993041 124993042 - C FER1L6 Frame_Shift_Ins p.E470Gfs*8 0.27 TCGA-D5-6540-01 8 125035779 125035779 C T FER1L6 Silent p.S743S 0.26 TCGA-D5-6540-01 8 126036750 126036751 - A KIAA0196 3'UTR 0.34 TCGA-D5-6540-01 8 12885488 12885488 C T KIAA1456 3'UTR 0.52 TCGA-D5-6540-01 8 12886259 12886260 - T KIAA1456 3'UTR 0.42 TCGA-D5-6540-01 8 139838991 139838991 G A COL22A1 Silent p.Y293Y 0.16 TCGA-D5-6540-01 8 141595388 141595388 C G AGO2 Silent p.P15P 0.40 TCGA-D5-6540-01 8 142368004 142368004 G A GPR20 Missense_Mutation p.A7V 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-D5-6540-01 8 142435181 142435181 C T PTP4A3 Missense_Mutation p.R47C 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6540-01 8 142446849 142446849 G A CTD-3064M3.7 RNA 0.26 TCGA-D5-6540-01 8 143993421 143993422 - G CYP11B2 Frame_Shift_Ins p.L496Pfs*8 0.12 TCGA-D5-6540-01 8 144296907 144296907 C A GPIHBP1 Silent p.T67T 0.24 TCGA-D5-6540-01 8 144618595 144618595 A G ZC3H3 Missense_Mutation p.S465P 0.31 tolerated(0.32) benign(0) TCGA-D5-6540-01 8 144812611 144812611 C A FAM83H Missense_Mutation p.A48S 0.38 tolerated(0.4) benign(0.033) TCGA-D5-6540-01 8 144886852 144886852 G - SCRIB Frame_Shift_Del p.T966Pfs*9 0.44 TCGA-D5-6540-01 8 145109542 145109542 G - OPLAH Frame_Shift_Del p.H870Tfs*28 0.47 TCGA-D5-6540-01 8 145557057 145557057 C T SCRT1 Silent p.A279A 0.12 TCGA-D5-6540-01 8 145638204 145638204 C A SLC39A4 Missense_Mutation p.S585I 0.30 deleterious(0.04) benign(0.096) TCGA-D5-6540-01 8 17417933 17417933 G T SLC7A2 Missense_Mutation p.Q505H 0.28 tolerated(0.2) benign(0.012) TCGA-D5-6540-01 8 2005487 2005487 C A MYOM2 Silent p.A95A 0.60 TCGA-D5-6540-01 8 21560345 21560345 C G GFRA2 Missense_Mutation p.S397T 0.58 tolerated(0.23) possibly_damaging(0.661) TCGA-D5-6540-01 8 22548772 22548772 C T EGR3 Silent p.T126T 0.27 TCGA-D5-6540-01 8 23167240 23167240 G A LOXL2 Silent p.G607G 0.51 TCGA-D5-6540-01 8 24771583 24771583 G A NEFM Missense_Mutation p.D93N 0.28 deleterious(0.03) unknown(0) TCGA-D5-6540-01 8 24773237 24773237 G A NEFM Silent p.A400A 0.59 TCGA-D5-6540-01 8 24775943 24775944 - A NEFM Frame_Shift_Ins p.I861Nfs*4 0.27 TCGA-D5-6540-01 8 25279180 25279180 A G GNRH1 Missense_Mutation p.V49A 0.51 tolerated(1) benign(0) TCGA-D5-6540-01 8 26365050 26365050 G A PNMA2 3'UTR 0.24 TCGA-D5-6540-01 8 27168646 27168646 C T TRIM35 Missense_Mutation p.C36Y 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 8 27321003 27321003 C T CHRNA2 Silent p.P319P 0.26 TCGA-D5-6540-01 8 27925858 27925858 C A NUGGC Missense_Mutation p.A119S 0.05 deleterious(0.02) probably_damaging(0.979) TCGA-D5-6540-01 8 28019522 28019522 C T ELP3 Silent p.G498G 0.05 TCGA-D5-6540-01 8 2813254 2813254 G A CSMD1 Missense_Mutation p.A3284V 0.07 benign(0.003) TCGA-D5-6540-01 8 28929686 28929686 G A KIF13B Missense_Mutation p.P1557S 0.59 tolerated_low_confidence(0.14) benign(0.249) TCGA-D5-6540-01 8 30655267 30655267 G A PPP2CB Missense_Mutation p.R106C 0.57 deleterious(0) probably_damaging(0.998) TCGA-D5-6540-01 8 37555977 37555977 C A ZNF703 Missense_Mutation p.L520I 0.31 tolerated(0.52) benign(0.223) TCGA-D5-6540-01 8 39486895 39486895 A - ADAM18 Frame_Shift_Del p.N177Ifs*15 0.25 TCGA-D5-6540-01 8 41504120 41504120 C A NKX6-3 Missense_Mutation p.G86C 0.58 tolerated_low_confidence(0.08) probably_damaging(0.984) TCGA-D5-6540-01 8 41554096 41554096 C A ANK1 Silent p.V956V 0.65 TCGA-D5-6540-01 8 53477873 53477873 G A FAM150A 5'UTR 0.35 TCGA-D5-6540-01 8 55540859 55540859 A T RP1 Missense_Mutation p.N1473Y 0.19 deleterious(0.04) possibly_damaging(0.885) TCGA-D5-6540-01 8 59059489 59059489 G A FAM110B Missense_Mutation p.A234T 0.46 tolerated(0.46) benign(0) TCGA-D5-6540-01 8 59059930 59059930 G T FAM110B 3'UTR 0.52 TCGA-D5-6540-01 8 61654064 61654064 G A CHD7 Missense_Mutation p.G25R 0.53 probably_damaging(0.956) TCGA-D5-6540-01 8 6385144 6385144 C T ANGPT2 Silent p.S166S 0.27 TCGA-D5-6540-01 8 6582414 6582414 A - AGPAT5 Frame_Shift_Del p.N83Ifs*5 0.36 TCGA-D5-6540-01 8 6590133 6590133 C T AGPAT5 Nonsense_Mutation p.R153* 0.53 TCGA-D5-6540-01 8 66539537 66539537 C T ARMC1 Missense_Mutation p.A33T 0.26 tolerated(0.55) benign(0.015) TCGA-D5-6540-01 8 67341501 67341501 C - RRS1 Frame_Shift_Del p.P47Rfs*42 0.34 TCGA-D5-6540-01 8 68030561 68030561 T - CSPP1 Frame_Shift_Del p.Y522Mfs*18 0.23 TCGA-D5-6540-01 8 68930090 68930090 C A PREX2 Missense_Mutation p.H51N 0.24 deleterious(0.01) benign(0.158) TCGA-D5-6540-01 8 70585153 70585153 G A SLCO5A1 Missense_Mutation p.A833V 0.49 tolerated_low_confidence(0.22) benign(0.001) TCGA-D5-6540-01 8 71053580 71053580 G A NCOA2 Missense_Mutation p.P956L 0.25 tolerated(0.46) benign(0.064) TCGA-D5-6540-01 8 72755855 72755855 G A RP11-383H13.1 Silent p.P73P 0.45 TCGA-D5-6540-01 8 73850023 73850023 C T KCNB2 Silent p.D811D 0.48 TCGA-D5-6540-01 8 73850412 73850412 A - KCNB2 3'UTR 0.09 TCGA-D5-6540-01 8 77767449 77767449 G A ZFHX4 Silent p.P2764P 0.17 TCGA-D5-6540-01 8 77895523 77895523 C T PEX2 Missense_Mutation p.E298K 0.18 deleterious_low_confidence(0.01) benign(0.322) TCGA-D5-6540-01 8 87162349 87162349 C T ATP6V0D2 Silent p.A216A 0.22 TCGA-D5-6540-01 8 87460711 87460711 G A WWP1 Missense_Mutation p.V748M 0.51 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 8 94746015 94746015 G A RBM12B Missense_Mutation p.P875L 0.50 deleterious(0.03) benign(0.105) TCGA-D5-6540-01 8 94746445 94746445 G A RBM12B Missense_Mutation p.R732C 0.17 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D5-6540-01 8 94935099 94935099 G T PDP1 Missense_Mutation p.G296V 0.25 deleterious(0) probably_damaging(1) TCGA-D5-6540-01 8 95158391 95158391 C - CDH17 Frame_Shift_Del p.S645Lfs*3 0.38 TCGA-D5-6540-01 8 99045878 99045879 AC - MATN2 Frame_Shift_Del p.Q937Afs*55 0.41 TCGA-D5-6540-01 8 99961558 99961558 G T OSR2 Silent p.T126T 0.55 TCGA-D5-6540-01 9 102589024 102589024 T - NR4A3 5'UTR 0.28 TCGA-D5-6540-01 9 104071608 104071608 A C LPPR1 Silent p.A167A 0.33 TCGA-D5-6540-01 9 106864299 106864299 G A SMC2 Missense_Mutation p.R232H 0.39 tolerated(0.09) possibly_damaging(0.554) TCGA-D5-6540-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.10 TCGA-D5-6540-01 9 109689043 109689043 G T ZNF462 Silent p.T950T 0.40 TCGA-D5-6540-01 9 112168897 112168897 G A PTPN3 Missense_Mutation p.A546V 0.29 deleterious(0) probably_damaging(0.986) TCGA-D5-6540-01 9 116750697 116750697 G A ZNF618 Silent p.T58T 0.41 TCGA-D5-6540-01 9 116811849 116811849 C T ZNF618 Missense_Mutation p.T663I 0.39 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 9 116920 116920 C T FOXD4 Silent p.A400A 0.34 TCGA-D5-6540-01 9 117092167 117092167 G A ORM2 5'UTR 0.18 TCGA-D5-6540-01 9 123673672 123673673 - T TRAF1 Frame_Shift_Ins p.N275Kfs*8 0.21 TCGA-D5-6540-01 9 124530857 124530857 G A DAB2IP Missense_Mutation p.R587H 0.38 deleterious(0.02) probably_damaging(0.991) TCGA-D5-6540-01 9 124966927 124966927 G - LHX6 3'UTR 0.27 TCGA-D5-6540-01 9 125551455 125551455 G A OR5C1 Missense_Mutation p.G82S 0.34 tolerated(0.37) benign(0.004) TCGA-D5-6540-01 9 127572155 127572155 G A OLFML2A Missense_Mutation p.A475T 0.12 deleterious(0) possibly_damaging(0.798) TCGA-D5-6540-01 9 128070107 128070107 T C GAPVD1 Silent p.P463P 0.08 TCGA-D5-6540-01 9 128711707 128711707 G A PBX3 Intron 0.33 TCGA-D5-6540-01 9 130652938 130652938 G A ST6GALNAC6 Missense_Mutation p.R228W 0.34 possibly_damaging(0.851) TCGA-D5-6540-01 9 130674736 130674736 T C ST6GALNAC4 Missense_Mutation p.Q141R 0.33 benign(0.026) TCGA-D5-6540-01 9 130684341 130684341 G A PIP5KL1 Silent p.L324L 0.29 TCGA-D5-6540-01 9 131030747 131030747 G A GOLGA2 Silent p.G88G 0.41 TCGA-D5-6540-01 9 131857613 131857613 T C CRAT 3'UTR 0.50 TCGA-D5-6540-01 9 132400453 132400453 C T ASB6 Silent p.A294A 0.33 TCGA-D5-6540-01 9 132481652 132481652 C T PRRX2 Silent p.R134R 0.34 TCGA-D5-6540-01 9 133305750 133305750 C - HMCN2 Frame_Shift_Del p.P514Qfs*22 0.27 TCGA-D5-6540-01 9 134467565 134467565 C T RAPGEF1 Missense_Mutation p.V731M 0.38 tolerated(0.2) probably_damaging(0.964) TCGA-D5-6540-01 9 135285783 135285783 G A C9orf171 Missense_Mutation p.R42H 0.39 tolerated(0.08) possibly_damaging(0.585) TCGA-D5-6540-01 9 135974018 135974018 G A RALGDS Missense_Mutation p.R901C 0.32 deleterious(0) unknown(0) TCGA-D5-6540-01 9 136210948 136210948 G A MED22 Intron 0.36 TCGA-D5-6540-01 9 138011656 138011656 C T OLFM1 Silent p.L346L 0.37 TCGA-D5-6540-01 9 138376477 138376477 G A PPP1R26 Missense_Mutation p.A41T 0.39 deleterious(0.03) possibly_damaging(0.813) TCGA-D5-6540-01 9 138678124 138678124 G T KCNT1 Missense_Mutation p.G1087C 0.57 tolerated(0.15) possibly_damaging(0.778) TCGA-D5-6540-01 9 139235607 139235607 C T GPSM1 Intron 0.38 TCGA-D5-6540-01 9 139336198 139336198 A G SEC16A 3'UTR 0.37 TCGA-D5-6540-01 9 139350552 139350552 C T SEC16A Missense_Mutation p.A1873T 0.29 deleterious(0) benign(0.194) TCGA-D5-6540-01 9 139370040 139370040 G T SEC16A Silent p.P676P 0.32 TCGA-D5-6540-01 9 139818415 139818415 C T TRAF2 Missense_Mutation p.P417L 0.36 tolerated(0.2) benign(0.017) TCGA-D5-6540-01 9 139837356 139837356 C T FBXW5 Missense_Mutation p.A131T 0.31 tolerated(0.46) benign(0.222) TCGA-D5-6540-01 9 139874450 139874450 C T PTGDS Silent p.Y128Y 0.32 TCGA-D5-6540-01 9 139907661 139907661 C A ABCA2 Missense_Mutation p.G1554W 0.36 tolerated(0.15) probably_damaging(0.942) TCGA-D5-6540-01 9 140772556 140772556 G A CACNA1B Silent p.A57A 0.32 TCGA-D5-6540-01 9 141016140 141016140 G A CACNA1B Missense_Mutation p.A2237T 0.08 tolerated(0.2) benign(0.12) TCGA-D5-6540-01 9 14120462 14120462 G A NFIB Missense_Mutation p.P408S 0.37 tolerated(0.07) benign(0.019) TCGA-D5-6540-01 9 14125640 14125640 C T NFIB Missense_Mutation p.A351T 0.43 tolerated(0.61) benign(0.224) TCGA-D5-6540-01 9 15171910 15171910 T - TTC39B 3'UTR 0.33 TCGA-D5-6540-01 9 15563993 15563993 G A CCDC171 5'UTR 0.40 TCGA-D5-6540-01 9 18680349 18680350 - G ADAMTSL1 Frame_Shift_Ins p.I396Hfs*30 0.32 TCGA-D5-6540-01 9 19786519 19786519 C T SLC24A2 Missense_Mutation p.A116T 0.14 tolerated(0.41) benign(0.001) TCGA-D5-6540-01 9 19786676 19786676 A T SLC24A2 Missense_Mutation p.D63E 0.31 tolerated_low_confidence(1) benign(0) TCGA-D5-6540-01 9 20912949 20912949 C T FOCAD Missense_Mutation p.L935F 0.27 deleterious(0) benign(0.396) TCGA-D5-6540-01 9 2646534 2646534 C A VLDLR Missense_Mutation p.A562D 0.36 deleterious(0) probably_damaging(0.989) TCGA-D5-6540-01 9 2718552 2718552 C T KCNV2 Silent p.L271L 0.42 TCGA-D5-6540-01 9 27949742 27949742 G A LINGO2 Missense_Mutation p.R310C 0.30 deleterious(0.05) possibly_damaging(0.471) TCGA-D5-6540-01 9 32423345 32423346 - A ACO1 Frame_Shift_Ins p.Y336Ifs*13 0.26 TCGA-D5-6540-01 9 34372405 34372405 G A KIAA1161 Silent p.G145G 0.42 TCGA-D5-6540-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.43 TCGA-D5-6540-01 9 35562439 35562439 G - FAM166B Frame_Shift_Del p.P226Hfs*? 0.21 TCGA-D5-6540-01 9 35708370 35708370 T C TLN1 Missense_Mutation p.S1480G 0.18 tolerated(0.36) benign(0.016) TCGA-D5-6540-01 9 37354809 37354810 - A ZCCHC7 Frame_Shift_Ins p.I398Nfs*24 0.26 TCGA-D5-6540-01 9 6007330 6007330 C - KIAA2026 Frame_Shift_Del p.G153Afs*11 0.31 TCGA-D5-6540-01 9 6610264 6610264 C T GLDC Missense_Mutation p.G188D 0.11 deleterious(0) probably_damaging(0.984) TCGA-D5-6540-01 9 71628000 71628000 G A PRKACG Missense_Mutation p.R337W 0.32 tolerated(0.06) benign(0.019) TCGA-D5-6540-01 9 71679861 71679861 T C FXN Missense_Mutation p.V131A 0.08 deleterious(0.02) probably_damaging(0.979) TCGA-D5-6540-01 9 86421440 86421441 - T GKAP1 5'UTR 0.23 TCGA-D5-6540-01 9 90321327 90321327 G A DAPK1 Missense_Mutation p.R1114H 0.39 tolerated(0.21) benign(0.007) TCGA-D5-6540-01 9 95400515 95400515 A C IPPK Silent p.A228A 0.25 TCGA-D5-6540-01 9 98211549 98211549 G - PTCH1 Frame_Shift_Del p.S1203Afs*52 0.21 TCGA-D5-6540-01 9 99607278 99607278 G A ZNF782 Silent p.D12D 0.33 TCGA-D5-6540-01 9 99694411 99694411 G - NUTM2G Frame_Shift_Del p.G143Afs*109 0.31 TCGA-D5-6540-01 X 101096013 101096013 T G NXF5 Missense_Mutation p.K152T 0.35 deleterious(0.03) benign(0.04) TCGA-D5-6540-01 X 102192430 102192430 C T RAB40AL Missense_Mutation p.R62W 0.63 deleterious(0.01) probably_damaging(1) TCGA-D5-6540-01 X 105280663 105280663 C A SERPINA7 Missense_Mutation p.Q129H 0.80 tolerated(0.18) benign(0.01) TCGA-D5-6540-01 X 106224218 106224218 C T MORC4 Missense_Mutation p.R280H 0.86 deleterious(0) probably_damaging(0.985) TCGA-D5-6540-01 X 106242957 106242957 C T MORC4 Missense_Mutation p.S42N 0.71 deleterious(0) possibly_damaging(0.58) TCGA-D5-6540-01 X 106466032 106466032 A - PIH1D3 Frame_Shift_Del p.K132Rfs*11 0.42 TCGA-D5-6540-01 X 114250314 114250314 G T IL13RA2 Silent p.P55P 0.72 TCGA-D5-6540-01 X 114425317 114425317 G A RBMXL3 Missense_Mutation p.R438H 0.78 tolerated_low_confidence(0.21) benign(0) TCGA-D5-6540-01 X 123234540 123234540 T - STAG2 3'UTR 0.38 TCGA-D5-6540-01 X 123556262 123556262 C A TENM1 Missense_Mutation p.G1444V 0.70 deleterious(0) probably_damaging(0.999) TCGA-D5-6540-01 X 12904439 12904439 C T TLR7 Missense_Mutation p.A271V 0.75 tolerated(0.22) benign(0) TCGA-D5-6540-01 X 129054460 129054460 G T UTP14A Missense_Mutation p.K260N 0.72 deleterious(0.02) probably_damaging(0.986) TCGA-D5-6540-01 X 134166985 134166985 G A FAM127A 3'UTR 0.15 TCGA-D5-6540-01 X 13587905 13587905 C T EGFL6 5'UTR 0.73 TCGA-D5-6540-01 X 137939679 137939679 G A FGF13 Missense_Mutation p.P71L 0.80 tolerated(0.19) benign(0.001) TCGA-D5-6540-01 X 142967607 142967607 C A UBE2NL Silent p.A135A 0.65 TCGA-D5-6540-01 X 1506245 1506245 G T SLC25A6 Silent p.A222A 0.33 TCGA-D5-6540-01 X 152159762 152159762 G A PNMA5 Silent p.C127C 0.33 TCGA-D5-6540-01 X 153041104 153041104 G A PLXNB3 Missense_Mutation p.A1487T 0.75 tolerated(1) benign(0.005) TCGA-D5-6540-01 X 153496160 153496160 C T OPN1MW2 Silent p.G296G 0.16 TCGA-D5-6540-01 X 15720974 15720974 G A CA5BP1 RNA 0.63 TCGA-D5-6540-01 X 1718210 1718210 C T AKAP17A Missense_Mutation p.A346V 0.31 tolerated(0.13) unknown(0) TCGA-D5-6540-01 X 19017255 19017255 G A GPR64 Nonsense_Mutation p.R825* 0.73 TCGA-D5-6540-01 X 22012582 22012582 T - SMS 3'UTR 0.61 TCGA-D5-6540-01 X 24906154 24906154 G A POLA1 Missense_Mutation p.R1354H 0.67 tolerated(0.13) benign(0.008) TCGA-D5-6540-01 X 27765444 27765444 G A DCAF8L2 Silent p.E144E 0.26 TCGA-D5-6540-01 X 3241596 3241596 A G MXRA5 Silent p.T710T 0.79 TCGA-D5-6540-01 X 32456429 32456429 C T DMD Missense_Mutation p.G1334R 0.75 probably_damaging(0.996) TCGA-D5-6540-01 X 37553710 37553710 G T XK Silent p.A139A 0.75 TCGA-D5-6540-01 X 44921910 44921910 G A KDM6A Missense_Mutation p.A482T 0.73 tolerated(0.36) benign(0.01) TCGA-D5-6540-01 X 48320154 48320154 A - SLC38A5 Frame_Shift_Del p.F267Lfs*54 0.16 TCGA-D5-6540-01 X 49019185 49019185 C A MAGIX 5'Flank 0.72 TCGA-D5-6540-01 X 49646962 49646962 A G USP27X 3'UTR 0.55 TCGA-D5-6540-01 X 50378664 50378664 C A SHROOM4 Missense_Mutation p.V137L 0.75 tolerated(0.91) benign(0.048) TCGA-D5-6540-01 X 51487453 51487453 A - GSPT2 Frame_Shift_Del p.N246Tfs*11 0.47 TCGA-D5-6540-01 X 595417 595417 G A SHOX Silent p.K114K 0.35 TCGA-D5-6540-01 X 69354427 69354427 G A IGBP1 Silent p.V81V 0.77 TCGA-D5-6540-01 X 70053389 70053389 C A TEX11 Missense_Mutation p.D209Y 0.68 deleterious(0) probably_damaging(0.983) TCGA-D5-6540-01 X 70836821 70836821 G A CXCR3 Silent p.R214R 0.74 TCGA-D5-6540-01 X 82764400 82764400 A C POU3F4 Silent p.T356T 0.23 TCGA-D5-6540-01 X 83576915 83576916 - T HDX Frame_Shift_Ins p.N685Kfs*15 0.44 TCGA-D5-6540-01 X 8761780 8761780 T C FAM9A Silent p.K283K 0.71 TCGA-D5-6540-01 Y 5605577 5605577 C T PCDH11Y Missense_Mutation p.P1206L 0.15 deleterious_low_confidence(0) benign(0.409) TCGA-D5-6541-01 10 105238749 105238749 C T CALHM3 Missense_Mutation p.S14N 0.25 tolerated(1) benign(0.046) TCGA-D5-6541-01 10 16916444 16916444 G A CUBN Silent p.Y3055Y 0.24 TCGA-D5-6541-01 10 29821046 29821046 G A SVIL Missense_Mutation p.R632W 0.25 deleterious(0.01) benign(0.022) TCGA-D5-6541-01 10 70174659 70174659 C T DNA2 3'UTR 0.33 TCGA-D5-6541-01 11 103005080 103005080 C T DYNC2H1 Missense_Mutation p.R713W 0.29 probably_damaging(0.993) TCGA-D5-6541-01 11 124481573 124481573 G A PANX3 Missense_Mutation p.V41I 0.26 tolerated(0.7) benign(0.008) TCGA-D5-6541-01 11 47282094 47282094 C T NR1H3 Missense_Mutation p.R123C 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6541-01 11 55798390 55798390 C G OR5AS1 Missense_Mutation p.L166V 0.29 deleterious(0.04) possibly_damaging(0.822) TCGA-D5-6541-01 11 59245374 59245374 G A OR4D10 Missense_Mutation p.V158M 0.28 deleterious(0.02) benign(0.183) TCGA-D5-6541-01 11 70009427 70009427 G A ANO1 Missense_Mutation p.R644H 0.31 tolerated(0.28) benign(0.024) TCGA-D5-6541-01 12 120750294 120750294 G A SIRT4 Missense_Mutation p.R178Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-D5-6541-01 12 126139090 126139090 T C TMEM132B Missense_Mutation p.V1024A 0.34 deleterious(0) probably_damaging(0.998) TCGA-D5-6541-01 12 12980203 12980203 G A DDX47 Missense_Mutation p.R377H 0.32 deleterious(0.01) benign(0.037) TCGA-D5-6541-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.27 deleterious(0) benign(0.361) TCGA-D5-6541-01 12 394751 394751 A T KDM5A Silent p.A1648A 0.15 TCGA-D5-6541-01 12 52099240 52099240 G A SCN8A Missense_Mutation p.V392I 0.26 deleterious(0) probably_damaging(0.99) TCGA-D5-6541-01 12 56117695 56117695 C T RDH5 Nonsense_Mutation p.R199* 0.24 TCGA-D5-6541-01 12 56574770 56574770 G A SMARCC2 Missense_Mutation p.P358S 0.28 tolerated(0.19) possibly_damaging(0.641) TCGA-D5-6541-01 12 7981305 7981305 G A SLC2A14 Missense_Mutation p.T247M 0.34 deleterious(0.03) benign(0.129) TCGA-D5-6541-01 13 36900769 36900769 C G SPG20 Missense_Mutation p.E411Q 0.10 tolerated(0.08) benign(0.196) TCGA-D5-6541-01 14 22133653 22133653 G A OR4E2 Silent p.A119A 0.27 TCGA-D5-6541-01 14 23858092 23858092 C T MYH6 Missense_Mutation p.R1384Q 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-D5-6541-01 14 29237469 29237469 C T FOXG1 Silent p.N328N 0.37 TCGA-D5-6541-01 14 55474008 55474008 T C WDHD1 Missense_Mutation p.K197R 0.38 tolerated(0.24) possibly_damaging(0.71) TCGA-D5-6541-01 14 64006397 64006397 A G PPP2R5E Missense_Mutation p.S3P 0.25 tolerated_low_confidence(0.08) benign(0.1) TCGA-D5-6541-01 14 65251017 65251017 G A SPTB Missense_Mutation p.A1317V 0.26 deleterious(0.01) benign(0.399) TCGA-D5-6541-01 14 91700653 91700653 G A GPR68 Silent p.L248L 0.25 TCGA-D5-6541-01 14 94083479 94083479 T C UNC79 Silent p.Y1174Y 0.29 TCGA-D5-6541-01 15 27182354 27182354 C T GABRA5 Silent p.V201V 0.28 TCGA-D5-6541-01 15 75761308 75761308 C T PTPN9 Silent p.L528L 0.24 TCGA-D5-6541-01 15 89382101 89382101 G A ACAN Missense_Mutation p.R93H 0.18 tolerated(0.45) unknown(0) TCGA-D5-6541-01 15 91832791 91832792 - T SV2B Frame_Shift_Ins p.G586Wfs*4 0.24 TCGA-D5-6541-01 16 3406894 3406894 G A OR2C1 3'UTR 0.31 TCGA-D5-6541-01 16 81051405 81051405 C T CENPN Missense_Mutation p.S107L 0.25 tolerated(0.06) benign(0.077) TCGA-D5-6541-01 17 10265498 10265498 G A MYH13 Missense_Mutation p.R148C 0.41 deleterious(0) probably_damaging(0.992) TCGA-D5-6541-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.45 tolerated(0.11) benign(0.308) TCGA-D5-6541-01 18 19080008 19080008 C T GREB1L Missense_Mutation p.A1237V 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-D5-6541-01 18 3457371 3457371 C - TGIF1 Frame_Shift_Del p.W214Gfs*14 0.30 TCGA-D5-6541-01 19 14862462 14862462 C T EMR2 Missense_Mutation p.G604S 0.36 deleterious(0.02) possibly_damaging(0.839) TCGA-D5-6541-01 19 18572547 18572547 G A ELL Silent p.A195A 0.60 TCGA-D5-6541-01 19 35800969 35800969 C T MAG Missense_Mutation p.T475M 0.32 deleterious(0.02) possibly_damaging(0.791) TCGA-D5-6541-01 19 35801485 35801485 G A MAG Missense_Mutation p.A519T 0.06 deleterious(0.01) possibly_damaging(0.75) TCGA-D5-6541-01 19 38956906 38956906 C T RYR1 Nonsense_Mutation p.R1016* 0.32 TCGA-D5-6541-01 19 50187307 50187307 A G PRMT1 Missense_Mutation p.Y179C 0.29 deleterious(0) benign(0.051) TCGA-D5-6541-01 19 51172387 51172387 G A SHANK1 Missense_Mutation p.R944C 0.19 possibly_damaging(0.527) TCGA-D5-6541-01 19 7605862 7605862 G A PNPLA6 Silent p.T292T 0.52 TCGA-D5-6541-01 1 1269255 1269255 A G TAS1R3 Missense_Mutation p.E657G 0.20 deleterious(0) possibly_damaging(0.826) TCGA-D5-6541-01 1 1455629 1455629 G A ATAD3A Missense_Mutation p.R256H 0.28 tolerated(0.13) possibly_damaging(0.86) TCGA-D5-6541-01 1 152276851 152276851 G A FLG Missense_Mutation p.S3504L 0.31 unknown(0) TCGA-D5-6541-01 1 160260464 160260464 G T COPA Missense_Mutation p.L1154M 0.24 tolerated(0.07) probably_damaging(0.975) TCGA-D5-6541-01 1 181725204 181725204 G A CACNA1E Missense_Mutation p.V1368I 0.28 deleterious(0.02) possibly_damaging(0.699) TCGA-D5-6541-01 1 193028638 193028638 G T UCHL5 5'Flank 0.31 TCGA-D5-6541-01 1 196398855 196398855 C A KCNT2 Missense_Mutation p.G224V 0.29 deleterious(0) probably_damaging(0.976) TCGA-D5-6541-01 1 197390932 197390932 C A CRB1 Silent p.I658I 0.33 TCGA-D5-6541-01 1 228473873 228473873 C T OBSCN Silent p.Y3462Y 0.33 TCGA-D5-6541-01 1 237947352 237947352 C T RYR2 Nonsense_Mutation p.R4114* 0.23 TCGA-D5-6541-01 1 242013719 242013719 T G EXO1 5'UTR 0.29 TCGA-D5-6541-01 1 245849897 245849897 C T KIF26B Silent p.S1204S 0.37 TCGA-D5-6541-01 1 27672009 27672009 C T SYTL1 Missense_Mutation p.R62W 0.29 deleterious(0) probably_damaging(0.999) TCGA-D5-6541-01 1 38230743 38230743 C T EPHA10 5'Flank 0.33 TCGA-D5-6541-01 20 21494055 21494055 A C NKX2-2 Missense_Mutation p.Y85D 0.24 deleterious(0.04) benign(0.04) TCGA-D5-6541-01 20 30585090 30585090 C T XKR7 Missense_Mutation p.R524W 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6541-01 20 34078472 34078472 C T CEP250 Missense_Mutation p.R866C 0.16 benign(0.013) TCGA-D5-6541-01 20 37353362 37353362 G A SLC32A1 5'UTR 0.33 TCGA-D5-6541-01 20 44002639 44002639 A G TP53TG5 Missense_Mutation p.W261R 0.23 tolerated_low_confidence(0.35) benign(0) TCGA-D5-6541-01 21 40182027 40182027 C T ETS2 Silent p.L23L 0.06 TCGA-D5-6541-01 21 45878432 45878432 A T LRRC3 3'UTR 0.28 TCGA-D5-6541-01 21 47552215 47552215 C T COL6A2 Missense_Mutation p.R937W 0.33 deleterious(0) probably_damaging(0.999) TCGA-D5-6541-01 22 19373190 19373190 C T HIRA Missense_Mutation p.V395I 0.27 tolerated(1) benign(0.001) TCGA-D5-6541-01 22 24219385 24219385 G C SLC2A11 Intron 0.23 TCGA-D5-6541-01 22 24219448 24219448 G C SLC2A11 Intron 0.16 TCGA-D5-6541-01 22 50170801 50170801 G A BRD1 Missense_Mutation p.A870V 0.23 tolerated(0.51) benign(0) TCGA-D5-6541-01 2 102486786 102486786 C T MAP4K4 Missense_Mutation p.T809M 0.26 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-D5-6541-01 2 119988587 119988587 G A STEAP3 5'UTR 0.18 TCGA-D5-6541-01 2 137917829 137917829 G T THSD7B Missense_Mutation p.L472F 0.28 tolerated(0.71) possibly_damaging(0.765) TCGA-D5-6541-01 2 139316751 139316751 C G SPOPL Missense_Mutation p.H214D 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6541-01 2 166611480 166611480 C A GALNT3 Missense_Mutation p.V496L 0.24 tolerated(1) benign(0.011) TCGA-D5-6541-01 2 170366973 170366974 - A KLHL41 Frame_Shift_Ins p.Y231Ifs*3 0.31 TCGA-D5-6541-01 2 179702101 179702101 G A CCDC141 Missense_Mutation p.T1282I 0.30 tolerated(0.21) benign(0.02) TCGA-D5-6541-01 2 220026863 220026863 C T SLC23A3 Missense_Mutation p.R542Q 0.29 tolerated(0.52) benign(0.001) TCGA-D5-6541-01 2 32754774 32754774 C T BIRC6 Nonsense_Mutation p.R3993* 0.25 TCGA-D5-6541-01 2 70315180 70315180 T C PCBP1 Missense_Mutation p.L102P 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6541-01 3 10283813 10283813 G A IRAK2 Silent p.S593S 0.30 TCGA-D5-6541-01 3 10443891 10443891 C T ATP2B2 Missense_Mutation p.R180Q 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-D5-6541-01 3 121448815 121448817 TCT - GOLGB1 In_Frame_Del p.E48del 0.34 TCGA-D5-6541-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.29 deleterious(0.04) probably_damaging(0.96) TCGA-D5-6541-01 3 41266088 41266099 TCTTACCTGGAC - CTNNB1 In_Frame_Del p.Y30_S33del 0.55 TCGA-D5-6541-01 3 97852456 97852456 A - OR5H1 Frame_Shift_Del p.K307Nfs*? 0.22 TCGA-D5-6541-01 4 120192533 120192533 T C USP53 Silent p.H506H 0.22 TCGA-D5-6541-01 4 123814489 123814489 C T FGF2 3'UTR 0.25 TCGA-D5-6541-01 4 126237801 126237801 G A FAT4 Missense_Mutation p.A79T 0.24 benign(0.103) TCGA-D5-6541-01 4 184190313 184190313 C T WWC2 Silent p.C799C 0.29 TCGA-D5-6541-01 4 56447029 56447029 A G PDCL2 Silent p.D59D 0.27 TCGA-D5-6541-01 5 140033627 140033627 T G IK Missense_Mutation p.L170R 0.34 deleterious(0) probably_damaging(1) TCGA-D5-6541-01 5 156770123 156770123 T C FNDC9 Missense_Mutation p.H141R 0.38 tolerated(0.53) possibly_damaging(0.879) TCGA-D5-6541-01 5 158139262 158139262 G A EBF1 Silent p.S483S 0.27 TCGA-D5-6541-01 5 167674471 167674471 C T TENM2 Missense_Mutation p.T2176M 0.23 tolerated(0.14) probably_damaging(0.999) TCGA-D5-6541-01 5 175110609 175110609 C T HRH2 Missense_Mutation p.R125W 0.30 deleterious(0) probably_damaging(0.999) TCGA-D5-6541-01 5 180043377 180043377 C A FLT4 Missense_Mutation p.R1070L 0.29 deleterious(0) probably_damaging(1) TCGA-D5-6541-01 6 151670580 151670580 G A AKAP12 Missense_Mutation p.A352T 0.30 tolerated(0.14) benign(0.005) TCGA-D5-6541-01 7 103234836 103234836 C T RELN Missense_Mutation p.D1215N 0.28 deleterious(0) probably_damaging(0.995) TCGA-D5-6541-01 7 136912659 136912659 A T PTN 3'UTR 0.04 TCGA-D5-6541-01 7 154002547 154002547 C G DPP6 Intron 0.24 TCGA-D5-6541-01 8 100654048 100654048 C T VPS13B Nonsense_Mutation p.Q1769* 0.17 TCGA-D5-6541-01 8 105261014 105261014 C T RIMS2 Missense_Mutation p.R1188C 0.51 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D5-6541-01 8 143956528 143956528 C T CYP11B1 Missense_Mutation p.A415T 0.47 tolerated(0.29) benign(0.166) TCGA-D5-6541-01 8 51465686 51465686 G A SNTG1 Missense_Mutation p.V253I 0.50 tolerated(0.28) benign(0.001) TCGA-D5-6541-01 8 59409620 59409620 G A CYP7A1 Missense_Mutation p.R151C 0.50 tolerated(0.18) benign(0.134) TCGA-D5-6541-01 9 117165570 117165570 G A DFNB31 Missense_Mutation p.A823V 0.23 deleterious(0) probably_damaging(0.984) TCGA-D5-6541-01 9 13193256 13193256 C T MPDZ Silent p.A571A 0.32 TCGA-D5-6541-01 9 140262422 140262422 G T EXD3 Missense_Mutation p.T161K 0.26 tolerated(1) benign(0.001) TCGA-D5-6541-01 9 15471197 15471198 - T PSIP1 Intron 0.21 TCGA-D5-6541-01 9 20990241 20990241 G A FOCAD Silent p.P1708P 0.31 TCGA-D5-6541-01 9 87285760 87285760 C G NTRK2 Missense_Mutation p.P33A 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6541-01 X 107834388 107834388 T A COL4A5 Silent p.P422P 0.30 TCGA-D5-6541-01 X 118604440 118604440 C T SLC25A5 Missense_Mutation p.R235C 0.55 deleterious(0.05) benign(0.369) TCGA-D5-6541-01 X 21674812 21674812 G T KLHL34 Silent p.G365G 0.52 TCGA-D5-6541-01 X 30326792 30326792 C T NR0B1 Missense_Mutation p.R230Q 0.50 tolerated(1) benign(0.001) TCGA-D5-6541-01 X 34150323 34150323 G A FAM47A Missense_Mutation p.R25W 0.08 deleterious(0.04) possibly_damaging(0.529) TCGA-D5-6541-01 X 51149940 51149940 C T CXorf67 Silent p.N24N 0.47 TCGA-D5-6541-01 X 79699152 79699152 G A FAM46D Missense_Mutation p.V372I 0.51 tolerated_low_confidence(0.75) benign(0.002) TCGA-D5-6898-01 10 105147866 105147866 G T TAF5 Missense_Mutation p.E763D 0.25 tolerated(0.41) benign(0.003) TCGA-D5-6898-01 10 129864425 129864425 C T PTPRE Silent p.V270V 0.43 TCGA-D5-6898-01 11 102999732 102999732 A G DYNC2H1 Missense_Mutation p.K651E 0.04 benign(0.384) TCGA-D5-6898-01 11 108129749 108129749 C T ATM Nonsense_Mutation p.R805* 0.64 TCGA-D5-6898-01 11 121031011 121031011 C T TECTA Silent p.C1619C 0.81 TCGA-D5-6898-01 11 3111820 3111820 G A OSBPL5 Missense_Mutation p.S789L 0.44 deleterious(0) probably_damaging(0.985) TCGA-D5-6898-01 11 6292311 6292311 C T CCKBR Silent p.Y294Y 0.38 TCGA-D5-6898-01 12 130648665 130648665 C T FZD10 Missense_Mutation p.A393V 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-D5-6898-01 12 14927951 14927951 G T H2AFJ 3'UTR 0.35 TCGA-D5-6898-01 12 31815147 31815147 C T METTL20 Missense_Mutation p.P87L 0.10 deleterious(0.01) probably_damaging(1) TCGA-D5-6898-01 12 40668686 40668686 G C LRRK2 Missense_Mutation p.G611A 0.30 tolerated(0.54) benign(0.081) TCGA-D5-6898-01 12 52708508 52708508 G A KRT83 Silent p.N463N 0.40 TCGA-D5-6898-01 13 67800826 67800826 C A PCDH9 Nonsense_Mutation p.E583* 0.35 TCGA-D5-6898-01 13 95050858 95050858 C T GPC6 Silent p.N476N 0.17 TCGA-D5-6898-01 14 103414084 103414084 G T CDC42BPB Missense_Mutation p.R1169S 0.57 tolerated(0.05) possibly_damaging(0.505) TCGA-D5-6898-01 14 24588353 24588353 G T DCAF11 Splice_Site p.X260_splice 0.07 TCGA-D5-6898-01 14 91747826 91747826 A T CCDC88C Missense_Mutation p.F1558L 0.13 tolerated(0.69) benign(0) TCGA-D5-6898-01 15 41801323 41801323 G A LTK Silent p.G334G 0.31 TCGA-D5-6898-01 15 89807210 89807210 C G FANCI Missense_Mutation p.Q208E 0.28 deleterious(0.01) benign(0.444) TCGA-D5-6898-01 17 16722852 16722852 C T AC022596.6 RNA 0.27 TCGA-D5-6898-01 17 27614013 27614013 C T NUFIP2 Silent p.S333S 0.45 TCGA-D5-6898-01 17 7578217 7578217 G A TP53 Missense_Mutation p.T211I 0.55 deleterious(0.02) probably_damaging(0.96) TCGA-D5-6898-01 18 44336405 44336405 T C ST8SIA5 Missense_Mutation p.I23V 0.10 benign(0.009) TCGA-D5-6898-01 19 14492314 14492314 G T CD97 5'UTR 0.56 TCGA-D5-6898-01 19 40197838 40197838 T G LGALS14 Missense_Mutation p.V67G 0.24 deleterious(0) probably_damaging(0.999) TCGA-D5-6898-01 19 4511331 4511331 G A PLIN4 Nonsense_Mutation p.Q867* 0.11 TCGA-D5-6898-01 19 54313633 54313633 G A NLRP12 Missense_Mutation p.T427M 0.37 deleterious(0.03) benign(0.075) TCGA-D5-6898-01 19 55494896 55494896 C T NLRP2 Silent p.Y610Y 0.24 TCGA-D5-6898-01 19 58921331 58921331 G A ZNF584 Silent p.Q14Q 0.10 TCGA-D5-6898-01 19 8977668 8977668 G T MUC16 Missense_Mutation p.F14059L 0.23 probably_damaging(0.931) TCGA-D5-6898-01 19 9047723 9047723 G T MUC16 Missense_Mutation p.S11303Y 0.47 benign(0.007) TCGA-D5-6898-01 1 153012554 153012554 G T SPRR2D 3'UTR 0.54 TCGA-D5-6898-01 1 158435734 158435734 A G OR10K1 Missense_Mutation p.N128S 0.61 deleterious(0.04) benign(0.005) TCGA-D5-6898-01 1 165532890 165532890 C T LRRC52 Silent p.A257A 0.29 TCGA-D5-6898-01 1 200819029 200819029 G A CAMSAP2 Silent p.L1044L 0.64 TCGA-D5-6898-01 1 7723484 7723484 C T CAMTA1 Missense_Mutation p.R293W 0.84 deleterious(0) probably_damaging(0.997) TCGA-D5-6898-01 1 93819493 93819493 C T DR1 Silent p.Y83Y 0.18 TCGA-D5-6898-01 20 13763179 13763179 C T ESF1 Missense_Mutation p.C203Y 0.67 tolerated_low_confidence(1) benign(0.001) TCGA-D5-6898-01 20 29992757 29992757 T A DEFB121 Missense_Mutation p.T64S 0.12 tolerated(0.96) benign(0.002) TCGA-D5-6898-01 20 33567544 33567544 G A MYH7B Silent p.T135T 0.20 TCGA-D5-6898-01 21 28216841 28216841 C T ADAMTS1 Missense_Mutation p.V145M 0.41 tolerated(0.08) benign(0.164) TCGA-D5-6898-01 21 47360028 47360028 G A PCBP3 Missense_Mutation p.A332T 0.11 tolerated(0.32) benign(0.036) TCGA-D5-6898-01 22 24717709 24717709 G T SPECC1L Missense_Mutation p.R254L 0.43 tolerated(0.1) benign(0.022) TCGA-D5-6898-01 22 46655113 46655113 G T PKDREJ Missense_Mutation p.N1369K 0.19 tolerated(0.09) benign(0.266) TCGA-D5-6898-01 2 131520215 131520215 G A AMER3 Silent p.P190P 0.25 TCGA-D5-6898-01 2 20136083 20136084 - A WDR35 Frame_Shift_Ins p.R782* 0.17 TCGA-D5-6898-01 2 206997668 206997668 C A NDUFS1 Splice_Site p.X532_splice 0.20 TCGA-D5-6898-01 2 207173619 207173619 G T ZDBF2 Missense_Mutation p.C1456F 0.15 tolerated(0.12) benign(0.308) TCGA-D5-6898-01 2 219942827 219942827 C A NHEJ1 Missense_Mutation p.Q230H 0.42 deleterious(0.03) benign(0.076) TCGA-D5-6898-01 2 27552064 27552064 G A GTF3C2 Missense_Mutation p.R655C 0.29 deleterious(0) probably_damaging(0.966) TCGA-D5-6898-01 3 10443871 10443871 C T ATP2B2 Missense_Mutation p.E187K 0.28 tolerated(0.17) probably_damaging(0.998) TCGA-D5-6898-01 3 121400614 121400614 A T GOLGB1 Missense_Mutation p.D2931E 0.17 benign(0.026) TCGA-D5-6898-01 3 126423131 126423131 G A CHCHD6 5'UTR 0.31 TCGA-D5-6898-01 3 15686683 15686683 G C BTD Silent p.L440L 0.44 TCGA-D5-6898-01 3 37033279 37033280 - T EPM2AIP1 Frame_Shift_Ins p.N430Kfs*13 0.26 TCGA-D5-6898-01 3 52543935 52543935 G T STAB1 Silent p.G799G 0.11 TCGA-D5-6898-01 3 58110234 58110234 T C FLNB Splice_Site p.X1300_splice 0.08 TCGA-D5-6898-01 4 153332916 153332916 G A FBXW7 Nonsense_Mutation p.R14* 0.64 TCGA-D5-6898-01 4 155717901 155717901 A G RBM46 5'UTR 0.08 TCGA-D5-6898-01 4 169227840 169227840 T A DDX60 Missense_Mutation p.E99V 0.30 deleterious(0.01) possibly_damaging(0.477) TCGA-D5-6898-01 4 20852258 20852258 C T KCNIP4 Missense_Mutation p.V66I 0.21 tolerated(0.07) benign(0) TCGA-D5-6898-01 4 62599227 62599227 G A LPHN3 Missense_Mutation p.V384I 0.25 tolerated(0.41) possibly_damaging(0.844) TCGA-D5-6898-01 4 73185642 73185642 T A ADAMTS3 Missense_Mutation p.S381C 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6898-01 4 74270115 74270115 G A ALB Missense_Mutation p.R24Q 0.52 tolerated(0.06) benign(0.348) TCGA-D5-6898-01 4 8007054 8007054 C T ABLIM2 Intron 0.50 TCGA-D5-6898-01 5 112175390 112175390 C T APC Nonsense_Mutation p.Q1367* 0.71 TCGA-D5-6898-01 5 1221326 1221326 G A SLC6A19 Silent p.T533T 0.62 TCGA-D5-6898-01 5 127520109 127520110 - A SLC12A2 Frame_Shift_Ins p.E1119Rfs*7 0.32 TCGA-D5-6898-01 5 140215806 140215806 C T PCDHA7 Missense_Mutation p.P613L 0.17 tolerated_low_confidence(0.1) benign(0.021) TCGA-D5-6898-01 5 140307492 140307492 G A PCDHAC1 Missense_Mutation p.E339K 0.45 deleterious(0) possibly_damaging(0.492) TCGA-D5-6898-01 5 140308791 140308791 C T PCDHAC1 Missense_Mutation p.R772C 0.21 tolerated(0.18) benign(0.001) TCGA-D5-6898-01 5 145719545 145719545 C T POU4F3 Silent p.R185R 0.44 TCGA-D5-6898-01 6 121605014 121605014 A C TBC1D32 Missense_Mutation p.L472R 0.15 deleterious(0) probably_damaging(0.937) TCGA-D5-6898-01 6 13185123 13185123 C A PHACTR1 Missense_Mutation p.P139T 0.10 tolerated(0.5) benign(0.003) TCGA-D5-6898-01 6 147560357 147560357 C T STXBP5 Missense_Mutation p.R128C 0.45 deleterious(0) possibly_damaging(0.656) TCGA-D5-6898-01 6 151869501 151869501 T C CCDC170 Silent p.T217T 0.43 TCGA-D5-6898-01 6 43230634 43230634 G A TTBK1 Missense_Mutation p.R511H 0.18 benign(0.086) TCGA-D5-6898-01 6 85472341 85472341 G A TBX18 Missense_Mutation p.R140W 0.19 deleterious(0) probably_damaging(0.996) TCGA-D5-6898-01 6 88853707 88853707 C T CNR1 Silent p.S429S 0.52 TCGA-D5-6898-01 7 141540906 141540906 G A PRSS37 5'UTR 0.31 TCGA-D5-6898-01 7 148487469 148487469 G T CUL1 Missense_Mutation p.W581L 0.42 deleterious(0) probably_damaging(1) TCGA-D5-6898-01 7 1513215 1513215 C T INTS1 Missense_Mutation p.A1982T 0.45 tolerated(0.45) benign(0.125) TCGA-D5-6898-01 7 21856223 21856223 C T DNAH11 Missense_Mutation p.R3498C 0.44 probably_damaging(1) TCGA-D5-6898-01 7 26224340 26224340 C A NFE2L3 Missense_Mutation p.P341Q 0.28 tolerated(0.16) benign(0.011) TCGA-D5-6898-01 7 32338299 32338299 C T PDE1C Missense_Mutation p.A17T 0.14 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-D5-6898-01 7 44120484 44120485 - CTCTTC POLM In_Frame_Ins p.E72_E73dup 0.29 TCGA-D5-6898-01 7 71252761 71252761 T C CALN1 Nonstop_Mutation p.*262Wext*44 0.22 TCGA-D5-6898-01 7 92734735 92734735 A T SAMD9 Missense_Mutation p.C226S 0.22 deleterious(0) probably_damaging(0.999) TCGA-D5-6898-01 8 142228381 142228381 C T SLC45A4 Missense_Mutation p.R402H 0.77 deleterious(0.03) benign(0.169) TCGA-D5-6898-01 8 145111332 145111332 C T OPLAH Missense_Mutation p.E647K 0.69 tolerated(0.25) benign(0.002) TCGA-D5-6898-01 8 88885420 88885420 G C DCAF4L2 Missense_Mutation p.S260R 0.61 tolerated(0.48) benign(0.001) TCGA-D5-6898-01 8 99442309 99442309 C T KCNS2 3'UTR 0.12 TCGA-D5-6898-01 9 117037941 117037941 G A COL27A1 Missense_Mutation p.G1204R 0.46 probably_damaging(1) TCGA-D5-6898-01 9 120476067 120476067 A G TLR4 Missense_Mutation p.N554S 0.35 deleterious(0) probably_damaging(0.998) TCGA-D5-6898-01 9 130616703 130616703 C T ENG 5'UTR 0.21 TCGA-D5-6898-01 9 131866485 131866485 T C CRAT Missense_Mutation p.D131G 0.11 tolerated(0.2) benign(0.331) TCGA-D5-6898-01 9 137777683 137777683 G A FCN2 Missense_Mutation p.G167S 0.48 deleterious(0.02) probably_damaging(0.994) TCGA-D5-6898-01 9 139982604 139982604 C G MAN1B1 Silent p.L99L 0.29 TCGA-D5-6898-01 9 35092332 35092332 C T PIGO Missense_Mutation p.A518T 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-D5-6898-01 9 35825363 35825363 T C FAM221B Silent p.T202T 0.12 TCGA-D5-6898-01 X 111078308 111078308 T A TRPC5 Silent p.V579V 0.26 TCGA-D5-6898-01 X 140996524 140996524 G T MAGEC1 Nonsense_Mutation p.E1112* 0.51 TCGA-D5-6898-01 X 151514097 151514097 C T GABRA3 Missense_Mutation p.R73H 0.61 tolerated(0.06) probably_damaging(0.993) TCGA-D5-6898-01 X 37028734 37028734 C T FAM47C Missense_Mutation p.R751C 0.69 tolerated(0.2) probably_damaging(0.921) TCGA-D5-6920-01 10 102850413 102850413 T C TLX1NB 5'UTR 0.18 TCGA-D5-6920-01 10 44052121 44052121 G A ZNF239 3'UTR 0.29 TCGA-D5-6920-01 10 61834377 61834377 T C ANK3 Missense_Mutation p.T2088A 0.20 benign(0) TCGA-D5-6920-01 10 73611041 73611041 C A PSAP 5'UTR 0.22 TCGA-D5-6920-01 11 10673642 10673642 G A MRVI1 Missense_Mutation p.A52V 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D5-6920-01 11 110118494 110118494 G A RDX Missense_Mutation p.R342C 0.19 deleterious(0) benign(0.082) TCGA-D5-6920-01 11 113222841 113222841 C T TTC12 Missense_Mutation p.A453V 0.26 deleterious(0.02) possibly_damaging(0.714) TCGA-D5-6920-01 11 128642700 128642700 C T FLI1 Missense_Mutation p.H137Y 0.14 deleterious(0) probably_damaging(0.986) TCGA-D5-6920-01 11 132184460 132184460 A G NTM Missense_Mutation p.K266R 0.10 tolerated(0.52) benign(0.006) TCGA-D5-6920-01 11 33581375 33581375 C T KIAA1549L Silent p.T1015T 0.33 TCGA-D5-6920-01 11 33640205 33640205 C T KIAA1549L Silent p.Y1505Y 0.25 TCGA-D5-6920-01 11 55322467 55322467 C A OR4C15 Missense_Mutation p.H229N 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.462) TCGA-D5-6920-01 11 64428311 64428311 C T NRXN2 Missense_Mutation p.R700H 0.21 tolerated(0.4) possibly_damaging(0.805) TCGA-D5-6920-01 11 65366078 65366078 G A MAP3K11 Missense_Mutation p.P743L 0.23 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-D5-6920-01 11 7060034 7060034 A G NLRP14 Missense_Mutation p.S73G 0.16 tolerated(0.17) benign(0.021) TCGA-D5-6920-01 12 13764725 13764725 C T GRIN2B Missense_Mutation p.V572M 0.27 tolerated(0.3) benign(0.024) TCGA-D5-6920-01 12 30822117 30822117 C T IPO8 Missense_Mutation p.D382N 0.29 tolerated(0.13) possibly_damaging(0.651) TCGA-D5-6920-01 12 33021894 33021894 G A PKP2 Silent p.H379H 0.31 TCGA-D5-6920-01 12 49495285 49495285 G A LMBR1L Silent p.I326I 0.16 TCGA-D5-6920-01 12 53201572 53201572 C T KRT4 Missense_Mutation p.R401H 0.15 deleterious(0) possibly_damaging(0.609) TCGA-D5-6920-01 12 55886733 55886733 C G OR6C68 Nonsense_Mutation p.S191* 0.21 TCGA-D5-6920-01 12 7632588 7632588 A T CD163 Missense_Mutation p.N1116K 0.18 tolerated(0.31) benign(0.035) TCGA-D5-6920-01 13 109475564 109475564 C G MYO16 Silent p.T323T 0.15 TCGA-D5-6920-01 14 101348983 101348983 C T RTL1 Missense_Mutation p.V715M 0.18 tolerated(0.2) possibly_damaging(0.828) TCGA-D5-6920-01 14 24617532 24617532 C T RNF31 Silent p.P135P 0.17 TCGA-D5-6920-01 14 61115717 61115717 C T SIX1 Missense_Mutation p.R64H 0.22 tolerated(0.13) benign(0.189) TCGA-D5-6920-01 14 73963369 73963369 G A HEATR4 Missense_Mutation p.T854I 0.14 deleterious(0.02) benign(0.159) TCGA-D5-6920-01 15 20876446 20876446 G T NBEAP1 RNA 0.05 TCGA-D5-6920-01 15 27126037 27126037 A T GABRA5 Missense_Mutation p.D44V 0.16 deleterious(0.01) possibly_damaging(0.83) TCGA-D5-6920-01 15 29346111 29346111 C T APBA2 Silent p.S8S 0.32 TCGA-D5-6920-01 15 42057085 42057085 A G MGA Silent p.E2582E 0.28 TCGA-D5-6920-01 15 91434849 91434849 C A FES Missense_Mutation p.S532R 0.30 tolerated(0.83) benign(0.003) TCGA-D5-6920-01 16 13329012 13329012 G A SHISA9 Missense_Mutation p.G341S 0.26 tolerated(0.81) benign(0.419) TCGA-D5-6920-01 16 2285307 2285307 G A E4F1 Missense_Mutation p.E697K 0.12 deleterious(0.01) benign(0.028) TCGA-D5-6920-01 16 3140124 3140124 G A ZSCAN10 Silent p.C382C 0.23 TCGA-D5-6920-01 16 32264777 32264777 G A TP53TG3D Missense_Mutation p.G35R 0.21 tolerated_low_confidence(0.22) probably_damaging(0.98) TCGA-D5-6920-01 16 3807912 3807912 G A CREBBP Silent p.R1169R 0.17 TCGA-D5-6920-01 16 56553663 56553663 C T BBS2 Missense_Mutation p.G38S 0.27 tolerated(0.2) benign(0.266) TCGA-D5-6920-01 16 88503113 88503113 G A ZNF469 Missense_Mutation p.E3051K 0.16 benign(0.008) TCGA-D5-6920-01 17 16725684 16725684 G A AC022596.6 RNA 0.14 TCGA-D5-6920-01 17 1783921 1783921 G T RPA1 Missense_Mutation p.V393L 0.19 tolerated(0.3) benign(0.004) TCGA-D5-6920-01 17 18233977 18233977 C A SHMT1 Missense_Mutation p.D355Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-D5-6920-01 17 18380123 18380123 C T LGALS9C 5'UTR 0.24 TCGA-D5-6920-01 17 39973354 39973354 G A FKBP10 Missense_Mutation p.R97H 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-D5-6920-01 17 47583805 47583805 C T NGFR Missense_Mutation p.T118M 0.17 tolerated(0.11) benign(0.042) TCGA-D5-6920-01 17 48755136 48755136 A G ABCC3 Missense_Mutation p.K1137R 0.10 tolerated(0.32) probably_damaging(0.986) TCGA-D5-6920-01 17 70120241 70120241 C - SOX9 Frame_Shift_Del p.Q416Nfs*54 0.36 TCGA-D5-6920-01 17 71166296 71166296 G A SSTR2 Missense_Mutation p.V280I 0.07 tolerated(0.1) possibly_damaging(0.49) TCGA-D5-6920-01 17 74734467 74734467 C T MFSD11 Silent p.I11I 0.50 TCGA-D5-6920-01 18 28737393 28737393 C A DSC1 Missense_Mutation p.D98Y 0.18 deleterious(0) probably_damaging(0.984) TCGA-D5-6920-01 18 3457641 3457641 C A TGIF1 Nonsense_Mutation p.C303* 0.23 TCGA-D5-6920-01 18 44775361 44775361 G A SKOR2 Missense_Mutation p.A65V 0.36 probably_damaging(0.997) TCGA-D5-6920-01 18 48604770 48604770 G - SMAD4 Frame_Shift_Del p.A532Pfs*5 0.35 TCGA-D5-6920-01 19 14000349 14000349 C T C19orf57 Silent p.P440P 0.15 TCGA-D5-6920-01 19 15905250 15905250 G A OR10H5 Missense_Mutation p.R131H 0.20 tolerated(0.2) benign(0.001) TCGA-D5-6920-01 19 21608525 21608525 A G ZNF493 3'UTR 0.17 TCGA-D5-6920-01 19 38573507 38573507 C T SIPA1L3 Silent p.I434I 0.27 TCGA-D5-6920-01 19 4037832 4037832 C T PIAS4 Missense_Mutation p.R498C 0.21 deleterious(0) probably_damaging(0.993) TCGA-D5-6920-01 19 43430086 43430086 G A PSG7 Missense_Mutation p.P361L 0.18 tolerated(0.18) benign(0.021) TCGA-D5-6920-01 19 53454816 53454816 A G ZNF816 Missense_Mutation p.M71T 0.15 tolerated(0.25) benign(0.005) TCGA-D5-6920-01 19 55316444 55316444 C T KIR2DL4 Silent p.H91H 0.12 TCGA-D5-6920-01 19 57773423 57773423 A T CTC-444N24.8 RNA 0.26 TCGA-D5-6920-01 19 58420496 58420496 C T ZNF417 Missense_Mutation p.E384K 0.14 tolerated(0.1) benign(0.263) TCGA-D5-6920-01 1 109490262 109490262 T C CLCC1 Missense_Mutation p.I104V 0.18 deleterious(0.03) benign(0.361) TCGA-D5-6920-01 1 109953641 109953642 - ATT PSMA5 In_Frame_Ins p.V184_Y185insN 0.16 TCGA-D5-6920-01 1 12979893 12979893 A G PRAMEF7 Missense_Mutation p.D362G 0.09 probably_damaging(0.999) TCGA-D5-6920-01 1 145754045 145754046 - A PDZK1 Frame_Shift_Ins p.T231Nfs*56 0.15 TCGA-D5-6920-01 1 158669509 158669509 A G OR6K2 Missense_Mutation p.F312L 0.17 tolerated(0.28) benign(0.003) TCGA-D5-6920-01 1 16383395 16383395 C T CLCNKB Missense_Mutation p.P683L 0.19 deleterious(0) probably_damaging(0.986) TCGA-D5-6920-01 1 16927932 16927932 G C NBPF1 Intron 0.27 TCGA-D5-6920-01 1 176708877 176708877 G A PAPPA2 Missense_Mutation p.R1305H 0.13 deleterious(0.05) benign(0.001) TCGA-D5-6920-01 1 233394863 233394863 C T PCNXL2 Missense_Mutation p.D249N 0.25 tolerated_low_confidence(0.15) benign(0.007) TCGA-D5-6920-01 1 74701833 74701833 A T FPGT-TNNI3K Nonsense_Mutation p.R144* 0.20 TCGA-D5-6920-01 1 949491 949491 G T ISG15 Missense_Mutation p.R44L 0.12 tolerated(0.06) benign(0.13) TCGA-D5-6920-01 20 3955046 3955046 T C RNF24 5'Flank 0.26 TCGA-D5-6920-01 20 61386222 61386222 C T NTSR1 Silent p.H300H 0.17 TCGA-D5-6920-01 20 62193733 62193733 C T HELZ2 Missense_Mutation p.R2102H 0.22 deleterious(0) probably_damaging(0.939) TCGA-D5-6920-01 21 45670791 45670791 G A DNMT3L Missense_Mutation p.R271W 0.09 deleterious(0.02) benign(0.105) TCGA-D5-6920-01 22 29025745 29025745 A G TTC28 Missense_Mutation p.V59A 0.18 deleterious(0.01) benign(0.183) TCGA-D5-6920-01 22 31492725 31492725 G A SMTN Missense_Mutation p.R623Q 0.33 deleterious(0) possibly_damaging(0.631) TCGA-D5-6920-01 2 120885424 120885424 G A EPB41L5 Missense_Mutation p.E500K 0.24 tolerated(0.88) benign(0.001) TCGA-D5-6920-01 2 128047393 128047393 C T ERCC3 Missense_Mutation p.V177I 0.20 tolerated(0.39) benign(0.131) TCGA-D5-6920-01 2 130832836 130832836 G A POTEF Missense_Mutation p.R737C 0.10 tolerated_low_confidence(0.28) benign(0) TCGA-D5-6920-01 2 140990761 140990761 C A LRP1B Silent p.V4598V 0.11 TCGA-D5-6920-01 2 141242971 141242977 AGTAGGG - LRP1B Frame_Shift_Del p.Y3120* 0.12 TCGA-D5-6920-01 2 179431314 179431314 G A TTN Silent p.G26515G 0.28 TCGA-D5-6920-01 2 179640501 179640501 G C TTN Silent p.L2030L 0.23 TCGA-D5-6920-01 2 185798339 185798339 G A ZNF804A Missense_Mutation p.E89K 0.22 deleterious(0) probably_damaging(0.956) TCGA-D5-6920-01 2 185802563 185802563 C T ZNF804A Nonsense_Mutation p.R814* 0.13 TCGA-D5-6920-01 2 202401014 202401014 C A ALS2CR11 Silent p.L412L 0.22 TCGA-D5-6920-01 2 233659523 233659523 A G GIGYF2 Missense_Mutation p.I471V 0.27 benign(0.131) TCGA-D5-6920-01 2 238234312 238234312 C T COL6A3 Nonsense_Mutation p.W3128* 0.16 TCGA-D5-6920-01 2 239013316 239013316 C T ESPNL Missense_Mutation p.R169C 0.25 tolerated(0.21) benign(0.01) TCGA-D5-6920-01 2 242154222 242154222 C A ANO7 Nonsense_Mutation p.C631* 0.12 TCGA-D5-6920-01 2 242277205 242277205 G T SEPT2 Missense_Mutation p.R198S 0.22 deleterious(0) benign(0.378) TCGA-D5-6920-01 2 26101089 26101089 C T ASXL2 Translation_Start_Site p.M1? 0.17 deleterious(0) benign(0.38) TCGA-D5-6920-01 2 27851356 27851356 G A CCDC121 Missense_Mutation p.T92M 0.25 deleterious(0.03) benign(0.001) TCGA-D5-6920-01 2 31181299 31181299 G A GALNT14 Missense_Mutation p.R149W 0.19 deleterious(0) possibly_damaging(0.707) TCGA-D5-6920-01 2 55570788 55570788 G A CCDC88A Silent p.S443S 0.18 TCGA-D5-6920-01 2 74043776 74043776 C T C2orf78 Missense_Mutation p.A809V 0.19 tolerated(0.51) benign(0.014) TCGA-D5-6920-01 2 85621977 85621977 T G CAPG 3'UTR 0.20 TCGA-D5-6920-01 3 10219697 10219697 C T IRAK2 Silent p.I90I 0.19 TCGA-D5-6920-01 3 113795760 113795760 C T QTRTD1 Silent p.V251V 0.20 TCGA-D5-6920-01 3 15070111 15070111 G A NR2C2 Missense_Mutation p.A292T 0.24 deleterious(0.04) benign(0.039) TCGA-D5-6920-01 3 151085530 151085530 G A MED12L Missense_Mutation p.A1107T 0.18 deleterious(0) probably_damaging(0.986) TCGA-D5-6920-01 3 151163622 151163622 C T IGSF10 Missense_Mutation p.E1383K 0.21 tolerated(0.7) benign(0.003) TCGA-D5-6920-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.15 deleterious(0.02) probably_damaging(0.959) TCGA-D5-6920-01 3 51993925 51993925 C T PCBP4 Missense_Mutation p.A168T 0.22 tolerated(0.49) benign(0.016) TCGA-D5-6920-01 3 53263300 53263300 G A TKT Silent p.S428S 0.27 TCGA-D5-6920-01 3 58088009 58088009 C G FLNB Missense_Mutation p.F475L 0.14 deleterious(0.03) benign(0.213) TCGA-D5-6920-01 4 126398352 126398352 C T FAT4 Silent p.I4112I 0.25 TCGA-D5-6920-01 4 139140513 139140513 G A SLC7A11 Missense_Mutation p.T218M 0.16 deleterious(0) probably_damaging(0.982) TCGA-D5-6920-01 4 141543520 141543520 G - TBC1D9 Frame_Shift_Del p.I1211Sfs*11 0.17 TCGA-D5-6920-01 4 177084326 177084326 C T WDR17 Missense_Mutation p.R982C 0.25 deleterious(0) probably_damaging(0.998) TCGA-D5-6920-01 4 185339800 185339800 C T IRF2 Missense_Mutation p.A84T 0.25 deleterious(0) probably_damaging(1) TCGA-D5-6920-01 4 187179226 187179226 G T KLKB1 Missense_Mutation p.V593L 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6920-01 4 94006155 94006155 T A GRID2 Missense_Mutation p.L85H 0.19 deleterious(0) probably_damaging(0.999) TCGA-D5-6920-01 4 9785605 9785605 T G DRD5 3'UTR 0.21 TCGA-D5-6920-01 5 112128191 112128191 C T APC Nonsense_Mutation p.R232* 0.18 TCGA-D5-6920-01 5 164028056 164028056 C A CTC-340A15.2 RNA 0.18 TCGA-D5-6920-01 5 1798762 1798762 C T MRPL36 Silent p.P96P 0.08 TCGA-D5-6920-01 5 180474993 180474993 G A BTNL9 Missense_Mutation p.C59Y 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6920-01 5 26881623 26881623 G A CDH9 Silent p.G664G 0.19 TCGA-D5-6920-01 5 36035828 36035828 C T UGT3A2 Missense_Mutation p.R515H 0.18 tolerated(0.24) possibly_damaging(0.475) TCGA-D5-6920-01 5 78135204 78135204 G A ARSB Silent p.D396D 0.23 TCGA-D5-6920-01 5 78608290 78608290 G A JMY Missense_Mutation p.R678K 0.17 tolerated(1) benign(0.002) TCGA-D5-6920-01 6 122768411 122768411 C G SERINC1 Splice_Site p.X284_splice 0.09 TCGA-D5-6920-01 6 128134715 128134715 G A THEMIS Silent p.I357I 0.14 TCGA-D5-6920-01 6 131999076 131999076 C A ENPP3 Missense_Mutation p.A336D 0.17 tolerated(0.08) benign(0.259) TCGA-D5-6920-01 6 29430462 29430462 G A OR2H1 Missense_Mutation p.E306K 0.18 tolerated(0.39) benign(0.013) TCGA-D5-6920-01 6 70637868 70637868 G A COL19A1 Missense_Mutation p.A112T 0.13 tolerated(1) unknown(0) TCGA-D5-6920-01 6 82459519 82459519 C G FAM46A Missense_Mutation p.A408P 0.17 tolerated(0.11) probably_damaging(0.918) TCGA-D5-6920-01 7 156976705 156976705 C T UBE3C Silent p.A375A 0.24 TCGA-D5-6920-01 7 158824545 158824545 C T VIPR2 Missense_Mutation p.V373I 0.33 tolerated(0.45) benign(0.026) TCGA-D5-6920-01 7 1785678 1785678 G A ELFN1 Silent p.P482P 0.36 TCGA-D5-6920-01 7 2854001 2854001 C A GNA12 Intron 0.30 TCGA-D5-6920-01 7 49815100 49815100 G A VWC2 Missense_Mutation p.M23I 0.36 deleterious_low_confidence(0.01) benign(0.014) TCGA-D5-6920-01 7 6547741 6547741 C T GRID2IP Missense_Mutation p.V807M 0.19 tolerated(0.09) possibly_damaging(0.877) TCGA-D5-6920-01 8 109796639 109796639 C T TMEM74 Missense_Mutation p.R230H 0.23 deleterious(0) probably_damaging(0.987) TCGA-D5-6920-01 8 110397847 110397847 T A PKHD1L1 Missense_Mutation p.V186D 0.16 tolerated(0.13) probably_damaging(0.993) TCGA-D5-6920-01 8 26228056 26228056 G A PPP2R2A 3'UTR 0.45 TCGA-D5-6920-01 8 39785854 39785854 G T IDO1 3'UTR 0.60 TCGA-D5-6920-01 8 41518953 41518953 G A ANK1 Intron 0.17 TCGA-D5-6920-01 9 130509456 130509456 C T SH2D3C Missense_Mutation p.E412K 0.22 tolerated(0.23) possibly_damaging(0.707) TCGA-D5-6920-01 9 131094462 131094462 C T COQ4 Missense_Mutation p.R145C 0.40 deleterious(0) probably_damaging(0.993) TCGA-D5-6920-01 9 136320524 136320524 C T ADAMTS13 Missense_Mutation p.R1123C 0.17 deleterious(0) probably_damaging(0.977) TCGA-D5-6920-01 9 140707887 140707887 G A EHMT1 Missense_Mutation p.V1029M 0.28 deleterious(0) possibly_damaging(0.719) TCGA-D5-6920-01 9 23705039 23705039 T C ELAVL2 Missense_Mutation p.I122V 0.20 deleterious(0.02) benign(0.244) TCGA-D5-6920-01 9 34551926 34551926 G A CNTFR 3'UTR 0.26 TCGA-D5-6920-01 X 139866081 139866081 G A CDR1 Missense_Mutation p.R151C 0.18 tolerated(0.19) benign(0) TCGA-D5-6920-01 X 153068737 153068737 C A PDZD4 3'UTR 0.15 TCGA-D5-6920-01 X 153278798 153278798 C T IRAK1 Silent p.P542P 0.17 TCGA-D5-6920-01 X 16852426 16852426 A C TXLNG Missense_Mutation p.E335D 0.23 tolerated(0.09) possibly_damaging(0.759) TCGA-D5-6920-01 X 3235153 3235153 G A MXRA5 Missense_Mutation p.A2190V 0.41 tolerated(0.06) benign(0.311) TCGA-D5-6920-01 X 48896792 48896792 G A TFE3 Missense_Mutation p.A125V 0.16 tolerated(0.1) unknown(0) TCGA-D5-6920-01 X 56590913 56590913 C T UBQLN2 Nonsense_Mutation p.Q203* 0.17 TCGA-D5-6920-01 X 99662954 99662954 G A PCDH19 Silent p.G214G 0.28 TCGA-D5-6922-01 10 114136153 114136153 A G ACSL5 Missense_Mutation p.E29G 0.08 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-D5-6922-01 10 114925333 114925333 C T TCF7L2 Missense_Mutation p.R471C 0.67 deleterious(0) probably_damaging(0.944) TCGA-D5-6922-01 10 1279753 1279753 C T ADARB2 Missense_Mutation p.V466M 0.35 tolerated(0.16) benign(0.031) TCGA-D5-6922-01 10 17373467 17373467 G A ST8SIA6 Silent p.Y154Y 0.48 TCGA-D5-6922-01 10 27538068 27538068 G A RP11-85G18.6 Intron 0.50 TCGA-D5-6922-01 10 50178307 50178307 C T WDFY4 Silent p.G2967G 0.17 TCGA-D5-6922-01 10 5784256 5784256 C G FAM208B Missense_Mutation p.L842V 0.71 tolerated(0.5) benign(0.173) TCGA-D5-6922-01 11 111154951 111154952 - T C11orf53 Frame_Shift_Ins p.A54Gfs*51 0.31 TCGA-D5-6922-01 11 113704162 113704162 G A USP28 Nonsense_Mutation p.R247* 0.28 TCGA-D5-6922-01 11 114121125 114121125 C T ZBTB16 Missense_Mutation p.H624Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-D5-6922-01 11 1276473 1276473 G A MUC5B Silent p.P5289P 0.30 TCGA-D5-6922-01 11 14282299 14282299 G A RP11-21L19.1 3'Flank 0.25 TCGA-D5-6922-01 11 298631 298631 G A IFITM5 Missense_Mutation p.A90V 0.28 tolerated(0.08) benign(0.01) TCGA-D5-6922-01 11 55762042 55762042 C T OR5F1 Silent p.T20T 0.42 TCGA-D5-6922-01 11 56380883 56380883 A C OR5M1 Silent p.L32L 0.07 TCGA-D5-6922-01 11 83182759 83182759 G A DLG2 Missense_Mutation p.R786W 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6922-01 12 104698373 104698373 G A EID3 Missense_Mutation p.V221I 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-D5-6922-01 12 121094004 121094004 G A CABP1 Intron 0.26 TCGA-D5-6922-01 12 13715928 13715928 G A GRIN2B Missense_Mutation p.S1415L 0.56 tolerated(0.32) benign(0.001) TCGA-D5-6922-01 12 44189297 44189297 T C TWF1 3'UTR 0.12 TCGA-D5-6922-01 12 50052226 50052226 G A FMNL3 Missense_Mutation p.R202W 0.58 deleterious(0.01) probably_damaging(0.952) TCGA-D5-6922-01 12 53494599 53494599 G A IGFBP6 Silent p.T146T 0.30 TCGA-D5-6922-01 12 64878153 64878153 G A TBK1 Missense_Mutation p.E355K 0.32 deleterious(0.01) possibly_damaging(0.894) TCGA-D5-6922-01 13 21370325 21370325 C T XPO4 Missense_Mutation p.R896Q 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-D5-6922-01 13 27259872 27259872 C T WASF3 Missense_Mutation p.R467W 0.72 deleterious(0) probably_damaging(0.997) TCGA-D5-6922-01 13 35729927 35729927 T A NBEA Missense_Mutation p.V821E 0.37 deleterious(0) probably_damaging(0.943) TCGA-D5-6922-01 13 46553948 46553951 CTCT - ZC3H13 Frame_Shift_Del p.R637Ifs*28 0.63 TCGA-D5-6922-01 13 51825625 51825625 C T FAM124A Missense_Mutation p.A77V 0.68 tolerated(0.43) benign(0.059) TCGA-D5-6922-01 14 23865558 23865558 C T MYH6 Silent p.T788T 0.76 TCGA-D5-6922-01 14 74976039 74976039 A G LTBP2 Missense_Mutation p.V1102A 0.19 tolerated(0.35) benign(0.305) TCGA-D5-6922-01 14 79175866 79175866 G A NRXN3 Missense_Mutation p.V137M 0.21 tolerated(0.8) probably_damaging(0.992) TCGA-D5-6922-01 15 34140529 34140529 C G RYR3 Missense_Mutation p.A4512G 0.29 possibly_damaging(0.871) TCGA-D5-6922-01 15 39910082 39910082 G A FSIP1 Missense_Mutation p.T518I 0.33 deleterious(0) benign(0.268) TCGA-D5-6922-01 15 56961149 56961149 C G ZNF280D Missense_Mutation p.G473R 0.28 deleterious(0.03) possibly_damaging(0.518) TCGA-D5-6922-01 15 62251717 62251717 C T VPS13C Missense_Mutation p.R1329Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-D5-6922-01 15 79750484 79750484 C T KIAA1024 Silent p.H665H 0.16 TCGA-D5-6922-01 16 1878772 1878772 A G FAHD1 Intron 0.35 TCGA-D5-6922-01 16 2240126 2240126 C G CASKIN1 Missense_Mutation p.L64F 0.24 probably_damaging(0.995) TCGA-D5-6922-01 16 2522349 2522349 C T NTN3 Missense_Mutation p.T216I 0.19 deleterious(0) probably_damaging(0.985) TCGA-D5-6922-01 16 30615913 30615913 C T ZNF689 Missense_Mutation p.R392H 0.44 deleterious(0.01) probably_damaging(0.945) TCGA-D5-6922-01 16 4408420 4408420 C T CORO7 Missense_Mutation p.R802Q 0.24 deleterious(0.01) probably_damaging(0.942) TCGA-D5-6922-01 16 49559361 49559361 C T ZNF423 Missense_Mutation p.D1208N 0.63 deleterious(0.01) probably_damaging(0.912) TCGA-D5-6922-01 16 706340 706340 G T WDR90 Missense_Mutation p.D669Y 0.44 deleterious(0) possibly_damaging(0.879) TCGA-D5-6922-01 16 71983836 71983836 G T PKD1L3 RNA 0.16 TCGA-D5-6922-01 16 85704616 85704616 G A GSE1 Missense_Mutation p.R1144Q 0.41 deleterious(0) possibly_damaging(0.894) TCGA-D5-6922-01 17 40141480 40141484 AACTG - DNAJC7 Frame_Shift_Del p.Q231Ffs*10 0.12 TCGA-D5-6922-01 17 4337389 4337389 A G SPNS3 Missense_Mutation p.R43G 0.08 deleterious(0.01) possibly_damaging(0.641) TCGA-D5-6922-01 17 48629527 48629527 T G SPATA20 Missense_Mutation p.L648R 0.19 deleterious(0) probably_damaging(0.99) TCGA-D5-6922-01 17 59857698 59857698 A C BRIP1 Missense_Mutation p.M620R 0.46 deleterious(0) probably_damaging(0.972) TCGA-D5-6922-01 17 67092920 67092920 C T ABCA6 Nonsense_Mutation p.W1048* 0.21 TCGA-D5-6922-01 17 7318990 7318990 G A NLGN2 Missense_Mutation p.G400S 0.75 deleterious(0) possibly_damaging(0.852) TCGA-D5-6922-01 17 7578211 7578211 C A TP53 Missense_Mutation p.R213L 0.58 deleterious(0) probably_damaging(1) TCGA-D5-6922-01 17 79954350 79954350 G A ASPSCR1 Silent p.S187S 0.32 TCGA-D5-6922-01 18 32822398 32822398 T C ZNF397 5'UTR 0.09 TCGA-D5-6922-01 18 59922665 59922665 G T KIAA1468 Missense_Mutation p.R617L 0.60 deleterious(0) possibly_damaging(0.858) TCGA-D5-6922-01 19 11557966 11557966 C T PRKCSH Silent p.Y280Y 0.29 TCGA-D5-6922-01 19 35616166 35616167 - A LGI4 Frame_Shift_Ins p.L516Pfs*7 0.36 TCGA-D5-6922-01 19 38948830 38948830 G A RYR1 Missense_Mutation p.E689K 0.22 possibly_damaging(0.459) TCGA-D5-6922-01 19 41518261 41518261 T C CYP2B6 Silent p.H341H 0.09 TCGA-D5-6922-01 19 43672176 43672176 G C PSG5 Intron 0.22 TCGA-D5-6922-01 19 51295378 51295378 C T ACPT Missense_Mutation p.R167W 0.28 deleterious(0.01) probably_damaging(0.912) TCGA-D5-6922-01 19 54784379 54784379 C T LILRB2 5'UTR 0.56 TCGA-D5-6922-01 19 55106788 55106788 G A LILRA1 Silent p.S194S 0.48 TCGA-D5-6922-01 19 6218015 6218015 G A MLLT1 Missense_Mutation p.S383L 0.22 deleterious(0) benign(0.307) TCGA-D5-6922-01 1 110719344 110719344 C T SLC6A17 Missense_Mutation p.H283Y 0.49 tolerated(0.28) possibly_damaging(0.86) TCGA-D5-6922-01 1 151149062 151149062 G A VPS72 3'UTR 0.57 TCGA-D5-6922-01 1 152648742 152648742 G T LCE2C Missense_Mutation p.R84L 0.14 tolerated_low_confidence(0.64) unknown(0) TCGA-D5-6922-01 1 152882716 152882716 A C IVL Missense_Mutation p.K148T 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-D5-6922-01 1 15808878 15808878 G A CELA2B Missense_Mutation p.V116I 0.25 tolerated(0.23) benign(0.017) TCGA-D5-6922-01 1 16945338 16945338 G C RP5-1182A14.5 3'Flank 0.14 TCGA-D5-6922-01 1 170633595 170633595 A G PRRX1 Missense_Mutation p.Q79R 0.09 tolerated(0.2) possibly_damaging(0.838) TCGA-D5-6922-01 1 171301933 171301933 G C FMO4 Missense_Mutation p.R238T 0.35 deleterious(0) probably_damaging(0.99) TCGA-D5-6922-01 1 182555604 182555604 G C RNASEL Missense_Mutation p.S113C 0.19 deleterious(0.01) probably_damaging(0.968) TCGA-D5-6922-01 1 193150290 193150290 G C B3GALT2 Missense_Mutation p.H135D 0.33 tolerated(0.39) benign(0.001) TCGA-D5-6922-01 1 193150291 193150291 G A B3GALT2 Silent p.Y134Y 0.34 TCGA-D5-6922-01 1 20519114 20519114 T C UBXN10 3'UTR 0.47 TCGA-D5-6922-01 1 248367062 248367062 A T OR2M3 Silent p.G231G 0.22 TCGA-D5-6922-01 1 27101195 27101195 C T ARID1A Nonsense_Mutation p.Q1493* 0.38 TCGA-D5-6922-01 1 60139781 60139781 C T FGGY Silent p.A520A 0.41 TCGA-D5-6922-01 1 74621436 74621436 A C LRRIQ3 Missense_Mutation p.L230V 0.23 deleterious(0.02) benign(0.346) TCGA-D5-6922-01 20 25273176 25273176 G A PYGB Missense_Mutation p.E702K 0.10 deleterious(0) possibly_damaging(0.854) TCGA-D5-6922-01 20 34116364 34116364 G T C20orf173 Missense_Mutation p.S166R 0.28 tolerated(0.59) benign(0.121) TCGA-D5-6922-01 20 36322471 36322471 C T CTNNBL1 5'UTR 0.47 TCGA-D5-6922-01 20 36572750 36572750 G A VSTM2L 3'UTR 0.26 TCGA-D5-6922-01 20 62737704 62737704 G A NPBWR2 Missense_Mutation p.R161W 0.20 tolerated(0.06) benign(0.028) TCGA-D5-6922-01 21 11014968 11014970 TCT - TPTE RNA 0.20 TCGA-D5-6922-01 21 16338901 16338901 G T NRIP1 Missense_Mutation p.S538Y 0.39 tolerated(0.28) probably_damaging(0.934) TCGA-D5-6922-01 21 46908349 46908349 G A COL18A1 Silent p.P818P 0.23 TCGA-D5-6922-01 22 20780111 20780111 C T SCARF2 Missense_Mutation p.D723N 0.11 tolerated(0.18) probably_damaging(0.996) TCGA-D5-6922-01 22 31011695 31011695 C A TCN2 Silent p.L287L 0.63 TCGA-D5-6922-01 22 31011710 31011710 G C TCN2 Silent p.L292L 0.54 TCGA-D5-6922-01 22 39440280 39440280 G C APOBEC3F Intron 0.29 TCGA-D5-6922-01 22 50752264 50752264 C T DENND6B Silent p.A394A 0.29 TCGA-D5-6922-01 2 107423228 107423228 G A ST6GAL2 Missense_Mutation p.T499M 0.29 possibly_damaging(0.513) TCGA-D5-6922-01 2 152226745 152226745 C T TNFAIP6 Silent p.V202V 0.17 TCGA-D5-6922-01 2 179587646 179587646 G A TTN Missense_Mutation p.T7327M 0.30 TCGA-D5-6922-01 2 185801469 185801469 C A ZNF804A Missense_Mutation p.T449K 0.06 deleterious(0) probably_damaging(0.993) TCGA-D5-6922-01 2 197986226 197986226 C T ANKRD44 Missense_Mutation p.A246T 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6922-01 2 219029099 219029099 C T CXCR1 Missense_Mutation p.R279H 0.56 tolerated(0.29) benign(0.035) TCGA-D5-6922-01 2 233244528 233244528 G A ALPP Missense_Mutation p.G180D 0.17 deleterious(0) probably_damaging(0.965) TCGA-D5-6922-01 2 233348865 233348865 C T ECEL1 Missense_Mutation p.R418H 0.43 deleterious(0) probably_damaging(0.999) TCGA-D5-6922-01 2 27294333 27294333 T G OST4 Splice_Site 0.29 TCGA-D5-6922-01 2 71797809 71797809 C T DYSF Nonsense_Mutation p.R1056* 0.15 TCGA-D5-6922-01 2 80136810 80136810 G T CTNNA2 Missense_Mutation p.A315S 0.20 deleterious(0) probably_damaging(0.977) TCGA-D5-6922-01 2 9514994 9514994 C T ASAP2 Missense_Mutation p.T556M 0.31 deleterious(0.01) benign(0.002) TCGA-D5-6922-01 3 114069325 114069325 C T ZBTB20 Missense_Mutation p.G534S 0.20 tolerated(0.23) probably_damaging(0.986) TCGA-D5-6922-01 3 147120578 147120578 A G ZIC4 Missense_Mutation p.Y53H 0.58 deleterious_low_confidence(0.04) benign(0.137) TCGA-D5-6922-01 3 179085885 179085885 C G MFN1 Missense_Mutation p.I323M 0.49 deleterious(0.02) benign(0.258) TCGA-D5-6922-01 3 195938173 195938173 G A ZDHHC19 Missense_Mutation p.T5M 0.20 tolerated_low_confidence(0.08) benign(0) TCGA-D5-6922-01 3 38139283 38139283 C T DLEC1 Missense_Mutation p.R872C 0.38 deleterious(0.03) benign(0.256) TCGA-D5-6922-01 3 49722278 49722278 G A MST1 Silent p.T554T 0.08 TCGA-D5-6922-01 4 101108906 101108906 G A DDIT4L Silent p.L170L 0.45 TCGA-D5-6922-01 4 114275156 114275156 G A ANK2 Silent p.K1794K 0.23 TCGA-D5-6922-01 4 123855630 123855630 C G SPATA5 Missense_Mutation p.S295C 0.26 deleterious(0.01) possibly_damaging(0.765) TCGA-D5-6922-01 4 156269027 156269027 G A MAP9 Nonsense_Mutation p.R618* 0.16 TCGA-D5-6922-01 4 162307172 162307172 G A FSTL5 Silent p.Y757Y 0.47 TCGA-D5-6922-01 4 177084384 177084384 C T WDR17 Missense_Mutation p.A1001V 0.49 tolerated(0.15) benign(0.003) TCGA-D5-6922-01 4 78079665 78079665 T A CCNG2 Intron 0.25 TCGA-D5-6922-01 5 112162804 112162804 G A APC Splice_Site p.X470_splice 0.35 TCGA-D5-6922-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.29 TCGA-D5-6922-01 5 1222098 1222098 C G SLC6A19 3'UTR 0.33 TCGA-D5-6922-01 5 140083514 140083514 A G ZMAT2 Missense_Mutation p.N83S 0.36 tolerated(0.29) benign(0.14) TCGA-D5-6922-01 5 140229205 140229205 C T PCDHA9 Silent p.I375I 0.76 TCGA-D5-6922-01 5 140229343 140229343 C T PCDHA9 Silent p.Y421Y 0.65 TCGA-D5-6922-01 5 167379630 167379630 C T TENM2 Silent p.P250P 0.36 TCGA-D5-6922-01 5 176317898 176317898 C T HK3 Silent p.A153A 0.30 TCGA-D5-6922-01 5 38881805 38881805 C T OSMR Silent p.D119D 0.39 TCGA-D5-6922-01 5 45262552 45262552 C T HCN1 Missense_Mutation p.R715Q 0.35 tolerated_low_confidence(0.05) probably_damaging(0.953) TCGA-D5-6922-01 5 54403632 54403632 T C GZMA Missense_Mutation p.S76P 0.34 tolerated(0.42) benign(0.007) TCGA-D5-6922-01 5 67589634 67589634 T G PIK3R1 Nonsense_Mutation p.L466* 0.28 TCGA-D5-6922-01 5 94988752 94988752 C T RFESD Intron 0.54 TCGA-D5-6922-01 6 153075359 153075359 G A VIP Missense_Mutation p.E56K 0.30 tolerated(0.87) benign(0.013) TCGA-D5-6922-01 6 154360814 154360814 C T OPRM1 Silent p.C138C 0.29 TCGA-D5-6922-01 6 96657656 96657656 G C FUT9 3'UTR 0.19 TCGA-D5-6922-01 6 99819310 99819310 C T COQ3 Missense_Mutation p.E295K 0.33 tolerated(0.07) benign(0.186) TCGA-D5-6922-01 7 121651510 121651510 G C PTPRZ1 Missense_Mutation p.D804H 0.32 deleterious_low_confidence(0) possibly_damaging(0.809) TCGA-D5-6922-01 7 123509008 123509008 C T HYAL4 Silent p.N227N 0.46 TCGA-D5-6922-01 7 134617972 134617972 A T CALD1 Missense_Mutation p.E151V 0.16 deleterious(0) unknown(0) TCGA-D5-6922-01 7 147675054 147675054 G A CNTNAP2 Missense_Mutation p.V786I 0.39 tolerated(0.64) benign(0.062) TCGA-D5-6922-01 7 29923776 29923776 G A WIPF3 Silent p.A222A 0.36 TCGA-D5-6922-01 7 5545111 5545111 G A FBXL18 Missense_Mutation p.R57W 0.40 deleterious(0) probably_damaging(0.976) TCGA-D5-6922-01 7 72726959 72726959 G A TRIM50 Silent p.S474S 0.29 TCGA-D5-6922-01 7 80374203 80374203 G C SEMA3C 3'UTR 0.16 TCGA-D5-6922-01 7 93113265 93113265 G A CALCR Intron 0.42 TCGA-D5-6922-01 9 114131439 114131439 G T KIAA0368 Missense_Mutation p.S1841R 0.19 tolerated(0.29) benign(0.006) TCGA-D5-6922-01 9 117840406 117840406 G A TNC Silent p.I830I 0.51 TCGA-D5-6922-01 9 132381873 132381873 C T C9orf50 Silent p.S214S 0.22 TCGA-D5-6922-01 9 138515774 138515774 A C GLT6D1 3'UTR 0.27 TCGA-D5-6922-01 9 36171115 36171115 T C CCIN Missense_Mutation p.V539A 0.10 tolerated(0.77) benign(0.001) TCGA-D5-6922-01 9 93637007 93637007 G A SYK Missense_Mutation p.A353T 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6922-01 9 96289451 96289451 A G FAM120A Missense_Mutation p.N478S 0.16 tolerated(0.75) benign(0.012) TCGA-D5-6922-01 X 104984652 104984652 G A IL1RAPL2 Missense_Mutation p.R339Q 0.79 tolerated(0.08) possibly_damaging(0.707) TCGA-D5-6922-01 X 30327207 30327207 C T NR0B1 Missense_Mutation p.A92T 0.82 tolerated_low_confidence(0.08) benign(0.02) TCGA-D5-6922-01 X 49845319 49845319 C T CLCN5 Silent p.A224A 0.31 TCGA-D5-6922-01 X 63412095 63412095 G A AMER1 Nonsense_Mutation p.R358* 0.80 TCGA-D5-6924-01 10 102258466 102258466 T A SEC31B Silent p.T560T 0.29 TCGA-D5-6924-01 10 120460898 120460898 T A CACUL1 Missense_Mutation p.K239M 0.27 deleterious(0) probably_damaging(0.993) TCGA-D5-6924-01 10 129901787 129901787 T A MKI67 Missense_Mutation p.T2773S 0.25 tolerated(0.13) possibly_damaging(0.681) TCGA-D5-6924-01 10 133058601 133058601 C T TCERG1L Silent p.P259P 0.29 TCGA-D5-6924-01 10 21884268 21884268 C G MLLT10 Missense_Mutation p.H102D 0.45 deleterious(0) probably_damaging(0.963) TCGA-D5-6924-01 10 46321508 46321508 A G AGAP4 Missense_Mutation p.L616P 0.55 deleterious(0) probably_damaging(0.99) TCGA-D5-6924-01 10 49984848 49984848 G T WDFY4 Missense_Mutation p.A973S 0.44 tolerated(0.89) benign(0.08) TCGA-D5-6924-01 10 55912967 55912967 A C PCDH15 Missense_Mutation p.N559K 0.23 deleterious(0.01) probably_damaging(0.95) TCGA-D5-6924-01 10 55996665 55996665 C T PCDH15 Silent p.T301T 0.18 TCGA-D5-6924-01 10 5791157 5791158 - A FAM208B Nonsense_Mutation p.Y1925* 0.18 TCGA-D5-6924-01 10 72300890 72300890 C T PALD1 Silent p.A647A 0.25 TCGA-D5-6924-01 11 105795390 105795390 G C GRIA4 Missense_Mutation p.G581A 0.19 tolerated(0.14) benign(0.015) TCGA-D5-6924-01 11 124310715 124310715 C A OR8B8 Missense_Mutation p.K89N 0.29 deleterious_low_confidence(0.03) benign(0.027) TCGA-D5-6924-01 11 13393716 13393716 G A ARNTL Missense_Mutation p.R275Q 0.35 tolerated(0.52) benign(0.065) TCGA-D5-6924-01 11 17803257 17803257 G T KCNC1 Silent p.P578P 0.32 TCGA-D5-6924-01 11 18159273 18159273 C T MRGPRX3 Missense_Mutation p.T175M 0.20 tolerated(0.1) benign(0.233) TCGA-D5-6924-01 11 35454225 35454225 G A PAMR1 Silent p.N631N 0.23 TCGA-D5-6924-01 11 59609964 59609964 C T GIF Missense_Mutation p.V155I 0.32 tolerated(0.28) benign(0.011) TCGA-D5-6924-01 11 61647583 61647583 C T FADS3 Missense_Mutation p.R85H 0.30 deleterious(0.03) probably_damaging(1) TCGA-D5-6924-01 11 64360334 64360334 G A SLC22A12 Silent p.A162A 0.10 TCGA-D5-6924-01 11 67219234 67219234 C T GPR152 Missense_Mutation p.R321Q 0.36 tolerated(0.69) benign(0.016) TCGA-D5-6924-01 11 75902749 75902749 C T WNT11 Missense_Mutation p.R250Q 0.35 deleterious(0.04) probably_damaging(0.928) TCGA-D5-6924-01 11 8016616 8016616 G A EIF3F Missense_Mutation p.R278H 0.30 tolerated(0.16) benign(0.032) TCGA-D5-6924-01 12 113874589 113874589 C T SDSL Silent p.A235A 0.55 TCGA-D5-6924-01 12 118198819 118198819 G T KSR2 Missense_Mutation p.P328H 0.24 tolerated(0.11) probably_damaging(0.98) TCGA-D5-6924-01 12 14578311 14578311 C T ATF7IP Missense_Mutation p.P488S 0.40 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D5-6924-01 12 27829530 27829530 T G PPFIBP1 Nonsense_Mutation p.L544* 0.18 TCGA-D5-6924-01 12 54893148 54893148 G A NCKAP1L Missense_Mutation p.D38N 0.10 tolerated(0.06) benign(0.192) TCGA-D5-6924-01 12 56421626 56421626 C T IKZF4 Missense_Mutation p.R204C 0.44 deleterious(0) probably_damaging(1) TCGA-D5-6924-01 12 57587693 57587693 G A LRP1 Missense_Mutation p.G2606S 0.60 benign(0.003) TCGA-D5-6924-01 12 63544440 63544440 C T AVPR1A Silent p.A59A 0.28 TCGA-D5-6924-01 12 75893607 75893607 T G KRR1 Missense_Mutation p.K376N 0.43 tolerated(0.22) unknown(0) TCGA-D5-6924-01 12 75893614 75893614 T C KRR1 Missense_Mutation p.E374G 0.44 tolerated_low_confidence(0.15) possibly_damaging(0.628) TCGA-D5-6924-01 12 81046557 81046557 C A PTPRQ Missense_Mutation p.T2016N 0.16 deleterious(0) probably_damaging(0.948) TCGA-D5-6924-01 13 26411310 26411310 G A ATP8A2 Missense_Mutation p.A922T 0.14 deleterious(0.01) possibly_damaging(0.715) TCGA-D5-6924-01 13 36050801 36050801 C A MAB21L1 5'UTR 0.16 TCGA-D5-6924-01 13 41239788 41239788 C T FOXO1 Missense_Mutation p.E188K 0.64 deleterious(0) possibly_damaging(0.695) TCGA-D5-6924-01 13 44971561 44971561 T C SERP2 3'UTR 0.14 TCGA-D5-6924-01 14 20711728 20711728 C T OR11H4 Missense_Mutation p.L260F 0.51 deleterious(0.01) probably_damaging(0.986) TCGA-D5-6924-01 14 36943083 36943083 A T SFTA3 Missense_Mutation p.L89I 0.51 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-D5-6924-01 14 57099716 57099716 A G TMEM260 Silent p.K517K 0.15 TCGA-D5-6924-01 15 24921585 24921585 T G NPAP1 Missense_Mutation p.S191A 0.13 tolerated(0.1) benign(0.216) TCGA-D5-6924-01 15 28421907 28421907 A T HERC2 Missense_Mutation p.V3147D 0.40 probably_damaging(0.979) TCGA-D5-6924-01 15 31358339 31358339 C T TRPM1 Missense_Mutation p.A261T 0.07 tolerated(0.15) benign(0.216) TCGA-D5-6924-01 15 44092137 44092137 C A SERINC4 Silent p.L16L 0.34 TCGA-D5-6924-01 15 75702578 75702578 A T SIN3A Nonsense_Mutation p.L353* 0.21 TCGA-D5-6924-01 15 79064028 79064028 C T ADAMTS7 Missense_Mutation p.G759R 0.69 deleterious(0) probably_damaging(1) TCGA-D5-6924-01 15 79092837 79092837 G A ADAMTS7 Silent p.V51V 0.40 TCGA-D5-6924-01 15 81631829 81631831 AGT - TMC3 In_Frame_Del p.Y620del 0.28 TCGA-D5-6924-01 15 83527873 83527873 G A HOMER2 Silent p.N145N 0.16 TCGA-D5-6924-01 15 86129047 86129047 C G AKAP13 Missense_Mutation p.T1385S 0.36 tolerated_low_confidence(0.2) benign(0.011) TCGA-D5-6924-01 15 92973339 92973339 T C ST8SIA2 Silent p.N53N 0.38 TCGA-D5-6924-01 15 99892632 99892632 A G LRRC28 Silent p.K217K 0.12 TCGA-D5-6924-01 16 23614714 23614714 T A PALB2 3'UTR 0.23 TCGA-D5-6924-01 16 27503935 27503935 T G GTF3C1 Intron 0.22 TCGA-D5-6924-01 16 51174418 51174418 G A SALL1 Missense_Mutation p.T572M 0.24 deleterious(0.02) possibly_damaging(0.815) TCGA-D5-6924-01 16 67221236 67221236 G A EXOC3L1 Missense_Mutation p.T311M 0.50 tolerated(0.42) possibly_damaging(0.547) TCGA-D5-6924-01 16 75148774 75148774 G C LDHD Silent p.R140R 0.27 TCGA-D5-6924-01 16 76509925 76509925 G T CNTNAP4 Missense_Mutation p.G509V 0.37 deleterious(0) probably_damaging(0.98) TCGA-D5-6924-01 17 34313665 34313665 G T CTB-186H2.3 Missense_Mutation p.M37I 0.37 unknown(0) TCGA-D5-6924-01 17 37340330 37340330 G C CACNB1 Silent p.P284P 0.33 TCGA-D5-6924-01 17 37437709 37437709 T C FBXL20 Missense_Mutation p.D210G 0.37 deleterious(0.01) probably_damaging(0.96) TCGA-D5-6924-01 17 60767277 60767277 T C MRC2 Missense_Mutation p.V1199A 0.15 tolerated(0.28) benign(0.217) TCGA-D5-6924-01 17 6928518 6928518 G A BCL6B Silent p.P296P 0.52 TCGA-D5-6924-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.83 deleterious(0) probably_damaging(0.999) TCGA-D5-6924-01 17 79202987 79202987 T C ENTHD2 Missense_Mutation p.E440G 0.49 tolerated(0.51) benign(0) TCGA-D5-6924-01 17 80622393 80622393 C T RAB40B Missense_Mutation p.R61Q 0.32 deleterious(0.04) benign(0.046) TCGA-D5-6924-01 18 30260213 30260213 C G KLHL14 Missense_Mutation p.D503H 0.56 deleterious(0.04) probably_damaging(0.998) TCGA-D5-6924-01 18 44057103 44057103 C T LOXHD1 3'UTR 0.61 TCGA-D5-6924-01 18 52265180 52265180 T A DYNAP Missense_Mutation p.I146N 0.52 deleterious(0.03) benign(0.278) TCGA-D5-6924-01 19 1117332 1117332 G A SBNO2 Missense_Mutation p.A565V 0.15 tolerated(0.09) benign(0.047) TCGA-D5-6924-01 19 1234249 1234249 C T C19orf26 Missense_Mutation p.A237T 0.10 tolerated(0.33) benign(0.003) TCGA-D5-6924-01 19 15221247 15221247 G A SYDE1 Intron 0.45 TCGA-D5-6924-01 19 19456161 19456161 T C MAU2 Missense_Mutation p.F402L 0.12 tolerated(0.08) benign(0.302) TCGA-D5-6924-01 19 22847037 22847037 G T ZNF492 Missense_Mutation p.R189I 0.35 tolerated(0.38) benign(0.089) TCGA-D5-6924-01 19 2987785 2987785 T G TLE6 Missense_Mutation p.S208A 0.22 tolerated(0.77) benign(0.025) TCGA-D5-6924-01 19 3201615 3201615 C T NCLN Missense_Mutation p.T264M 0.56 deleterious(0) possibly_damaging(0.802) TCGA-D5-6924-01 19 44117256 44117256 G C SRRM5 Missense_Mutation p.R328T 0.39 tolerated(0.12) benign(0.359) TCGA-D5-6924-01 19 44661482 44661482 G A ZNF234 Missense_Mutation p.R438H 0.42 deleterious(0.03) probably_damaging(0.911) TCGA-D5-6924-01 19 47422555 47422555 G A ARHGAP35 Missense_Mutation p.R208Q 0.41 tolerated(0.74) probably_damaging(0.996) TCGA-D5-6924-01 19 53643750 53643750 A C ZNF347 Silent p.T778T 0.21 TCGA-D5-6924-01 19 54803122 54803122 G T LILRA3 Silent p.G185G 0.19 TCGA-D5-6924-01 19 57670616 57670616 C T DUXA Missense_Mutation p.G71R 0.23 tolerated(0.55) benign(0.001) TCGA-D5-6924-01 19 6906479 6906479 G A EMR1 Missense_Mutation p.D329N 0.04 tolerated(1) benign(0.002) TCGA-D5-6924-01 19 9058871 9058871 G T MUC16 Silent p.T9525T 0.29 TCGA-D5-6924-01 19 9067652 9067652 C T MUC16 Silent p.G6598G 0.06 TCGA-D5-6924-01 1 100343326 100343326 C A AGL Missense_Mutation p.T518N 0.08 deleterious(0.02) benign(0.063) TCGA-D5-6924-01 1 103377768 103377768 C A COL11A1 Missense_Mutation p.G1345C 0.39 unknown(0) TCGA-D5-6924-01 1 109888404 109888404 C T SORT1 Missense_Mutation p.R311H 0.44 tolerated(0.07) benign(0.021) TCGA-D5-6924-01 1 13448243 13448243 G A PRAMEF13 Missense_Mutation p.T411M 0.31 tolerated(0.08) benign(0.04) TCGA-D5-6924-01 1 155785782 155785783 - C GON4L Intron 0.26 TCGA-D5-6924-01 1 157504434 157504434 G A FCRL5 Missense_Mutation p.R551C 0.35 deleterious(0.03) benign(0.189) TCGA-D5-6924-01 1 158450094 158450094 T A OR10R2 Missense_Mutation p.Y143N 0.27 deleterious(0) probably_damaging(0.916) TCGA-D5-6924-01 1 160063612 160063612 G A IGSF8 Silent p.D264D 0.39 TCGA-D5-6924-01 1 160105378 160105378 C T ATP1A2 Missense_Mutation p.T757M 0.36 deleterious(0) probably_damaging(0.943) TCGA-D5-6924-01 1 166135353 166135353 T A FAM78B Nonsense_Mutation p.K45* 0.16 TCGA-D5-6924-01 1 168274367 168274367 G A TBX19 Silent p.S283S 0.56 TCGA-D5-6924-01 1 170985464 170985464 C G MROH9 Missense_Mutation p.T632S 0.11 tolerated(0.18) benign(0) TCGA-D5-6924-01 1 17280824 17280824 A G CROCC Missense_Mutation p.D1098G 0.15 benign(0.155) TCGA-D5-6924-01 1 176015348 176015348 C T RFWD2 Missense_Mutation p.E464K 0.29 deleterious(0.01) benign(0.006) TCGA-D5-6924-01 1 183518342 183518342 G A SMG7 Splice_Site p.X919_splice 0.19 TCGA-D5-6924-01 1 235643397 235643397 C T B3GALNT2 Silent p.K208K 0.24 TCGA-D5-6924-01 1 236371373 236371373 G A GPR137B Nonsense_Mutation p.W372* 0.30 TCGA-D5-6924-01 1 237729972 237729972 C T RYR2 Missense_Mutation p.T1107M 0.23 benign(0.193) TCGA-D5-6924-01 1 248224296 248224296 G A OR2L3 Missense_Mutation p.A105T 0.25 tolerated(1) benign(0) TCGA-D5-6924-01 1 34049259 34049259 T C CSMD2 Missense_Mutation p.E2410G 0.28 tolerated(0.33) possibly_damaging(0.792) TCGA-D5-6924-01 1 55139476 55139476 T A MROH7 Missense_Mutation p.F600I 0.44 tolerated(0.37) benign(0.289) TCGA-D5-6924-01 1 77333229 77333229 C T ST6GALNAC5 5'UTR 0.23 TCGA-D5-6924-01 1 77528885 77528885 G T ST6GALNAC5 Silent p.V335V 0.23 TCGA-D5-6924-01 1 86590783 86590783 G A COL24A1 Silent p.I412I 0.48 TCGA-D5-6924-01 20 31387091 31387091 G C DNMT3B Missense_Mutation p.R572S 0.64 deleterious(0) probably_damaging(0.963) TCGA-D5-6924-01 20 31589051 31589051 G C SUN5 Missense_Mutation p.T82S 0.28 tolerated(0.16) possibly_damaging(0.853) TCGA-D5-6924-01 20 32248065 32248065 C T NECAB3 Missense_Mutation p.R175Q 0.48 tolerated(0.05) possibly_damaging(0.667) TCGA-D5-6924-01 20 33439107 33439107 G A GGT7 Missense_Mutation p.A551V 0.39 tolerated(0.12) benign(0.421) TCGA-D5-6924-01 20 34430592 34430592 G A PHF20 Missense_Mutation p.D61N 0.07 deleterious(0.01) benign(0.109) TCGA-D5-6924-01 20 40877444 40877444 G T PTPRT Missense_Mutation p.S732Y 0.26 deleterious(0) probably_damaging(0.941) TCGA-D5-6924-01 20 43243255 43243255 C T PKIG Missense_Mutation p.R20W 0.10 deleterious(0.03) probably_damaging(0.979) TCGA-D5-6924-01 20 4708617 4708617 A G PRND 3'UTR 0.20 TCGA-D5-6924-01 20 47342907 47342907 G A PREX1 Missense_Mutation p.R181W 0.13 deleterious(0) probably_damaging(0.998) TCGA-D5-6924-01 20 51870708 51870708 G A TSHZ2 Silent p.T237T 0.07 TCGA-D5-6924-01 20 57610011 57610011 G A SLMO2 3'UTR 0.38 TCGA-D5-6924-01 20 57767919 57767919 C G ZNF831 Missense_Mutation p.F615L 0.33 deleterious(0) probably_damaging(0.994) TCGA-D5-6924-01 21 34443726 34443726 C A OLIG1 3'UTR 0.17 TCGA-D5-6924-01 21 35471239 35471255 TTTAGGGAAATTACTTT - SLC5A3 3'UTR 0.09 TCGA-D5-6924-01 22 21133911 21133911 C G SERPIND1 Missense_Mutation p.T104R 0.29 tolerated(0.33) benign(0.061) TCGA-D5-6924-01 22 31091034 31091034 C T OSBP2 Silent p.S46S 0.35 TCGA-D5-6924-01 22 40657988 40657988 G T TNRC6B Nonsense_Mutation p.E90* 0.19 TCGA-D5-6924-01 22 42807438 42807448 GCCTCTCACCG - NFAM1 Frame_Shift_Del p.T139Kfs*95 0.33 TCGA-D5-6924-01 22 50957127 50957127 C T NCAPH2 Silent p.S232S 0.26 TCGA-D5-6924-01 2 130899828 130899828 C T CCDC74B Missense_Mutation p.R141Q 0.16 tolerated(0.57) benign(0.002) TCGA-D5-6924-01 2 145147490 145147490 T G ZEB2 Missense_Mutation p.D1058A 0.28 deleterious(0) possibly_damaging(0.9) TCGA-D5-6924-01 2 206480338 206480338 C T PARD3B Missense_Mutation p.P1078L 0.18 deleterious(0.01) possibly_damaging(0.804) TCGA-D5-6924-01 2 212251801 212251801 G T ERBB4 Missense_Mutation p.S1086R 0.07 tolerated(0.6) benign(0.05) TCGA-D5-6924-01 2 233415225 233415225 C T EIF4E2 5'UTR 0.13 TCGA-D5-6924-01 2 25141232 25141232 C T ADCY3 Missense_Mutation p.V209M 0.25 deleterious(0.02) possibly_damaging(0.769) TCGA-D5-6924-01 2 40657169 40657169 G A SLC8A1 Silent p.A84A 0.32 TCGA-D5-6924-01 2 48050432 48050432 T C FBXO11 Missense_Mutation p.N489S 0.28 deleterious(0) probably_damaging(0.998) TCGA-D5-6924-01 2 5839753 5839753 C A SOX11 3'UTR 0.28 TCGA-D5-6924-01 2 8957799 8957799 G A KIDINS220 Silent p.H85H 0.40 TCGA-D5-6924-01 2 95715399 95715399 C T MAL Missense_Mutation p.T112M 0.33 tolerated(0.22) benign(0.042) TCGA-D5-6924-01 3 130188229 130188229 C T COL6A5 Missense_Mutation p.P2461S 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6924-01 3 139098268 139098268 C T COPB2 Missense_Mutation p.R61Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-D5-6924-01 3 170841400 170841400 T G TNIK Missense_Mutation p.Q702P 0.28 tolerated(0.06) possibly_damaging(0.824) TCGA-D5-6924-01 3 38622444 38622444 G A SCN5A Missense_Mutation p.T1069M 0.29 deleterious(0.02) possibly_damaging(0.804) TCGA-D5-6924-01 3 49693981 49693981 T A BSN Missense_Mutation p.L2331Q 0.50 unknown(0) TCGA-D5-6924-01 3 69220880 69220880 G A FRMD4B 3'UTR 0.17 TCGA-D5-6924-01 3 7782180 7782180 G A GRM7 3'UTR 0.36 TCGA-D5-6924-01 4 115856440 115856440 T G NDST4 Missense_Mutation p.K486N 0.26 tolerated(0.93) probably_damaging(0.997) TCGA-D5-6924-01 4 128951753 128951753 T A C4orf29 Silent p.I389I 0.17 TCGA-D5-6924-01 4 151408967 151408967 G A LRBA Silent p.F2167F 0.36 TCGA-D5-6924-01 4 165878379 165878379 G A FAM218A Missense_Mutation p.V69I 0.09 deleterious_low_confidence(0) benign(0.208) TCGA-D5-6924-01 4 166131313 166131313 C T KLHL2 Missense_Mutation p.R7W 0.37 deleterious_low_confidence(0.03) benign(0.026) TCGA-D5-6924-01 4 46099354 46099354 T A GABRG1 Silent p.A39A 0.27 TCGA-D5-6924-01 4 48622711 48622711 C T FRYL Missense_Mutation p.G87R 0.21 tolerated(0.05) probably_damaging(0.958) TCGA-D5-6924-01 4 71275766 71275766 C G PROL1 Missense_Mutation p.Q241E 0.13 tolerated_low_confidence(0.18) unknown(0) TCGA-D5-6924-01 4 76434062 76434064 CTT - RCHY1 In_Frame_Del p.K98del 0.29 TCGA-D5-6924-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.35 TCGA-D5-6924-01 5 112175171 112175171 C T APC Nonsense_Mutation p.Q1294* 0.24 TCGA-D5-6924-01 5 122506594 122506594 T G PRDM6 Missense_Mutation p.F430V 0.20 deleterious(0.02) benign(0.054) TCGA-D5-6924-01 5 140209348 140209348 G A PCDHA6 Missense_Mutation p.E558K 0.40 deleterious_low_confidence(0.02) benign(0.196) TCGA-D5-6924-01 5 140515490 140515490 G A PCDHB5 Silent p.Q158Q 0.45 TCGA-D5-6924-01 5 140725296 140725296 G A PCDHGA3 Missense_Mutation p.A566T 0.19 tolerated_low_confidence(0.6) benign(0.007) TCGA-D5-6924-01 5 140735385 140735385 G A PCDHGA4 Silent p.A206A 0.41 TCGA-D5-6924-01 5 169533193 169533193 G A FOXI1 Missense_Mutation p.G78S 0.14 tolerated(0.09) benign(0.142) TCGA-D5-6924-01 5 170640723 170640733 GCAGAACTTAT - RANBP17 Frame_Shift_Del p.E775Kfs*9 0.32 TCGA-D5-6924-01 5 178410030 178410030 G A GRM6 Missense_Mutation p.R773C 0.37 deleterious(0) probably_damaging(0.945) TCGA-D5-6924-01 5 5239839 5239839 G A ADAMTS16 Missense_Mutation p.R775H 0.09 tolerated(0.32) benign(0.021) TCGA-D5-6924-01 5 71479591 71479591 G A MAP1B Missense_Mutation p.R103Q 0.17 unknown(0) TCGA-D5-6924-01 5 98129427 98129428 - A RGMB Frame_Shift_Ins p.T470Nfs*33 0.24 TCGA-D5-6924-01 6 102372579 102372579 G T GRIK2 Missense_Mutation p.A618S 0.43 tolerated(1) benign(0.124) TCGA-D5-6924-01 6 132874423 132874423 G T TAAR8 Missense_Mutation p.V198L 0.38 tolerated(0.09) benign(0.201) TCGA-D5-6924-01 6 136597156 136597156 C A BCLAF1 Nonsense_Mutation p.E503* 0.11 TCGA-D5-6924-01 6 152690107 152690107 C A SYNE1 Missense_Mutation p.K3269N 0.28 probably_damaging(1) TCGA-D5-6924-01 6 167571303 167571303 C A GPR31 Missense_Mutation p.C6F 0.44 deleterious(0) probably_damaging(0.981) TCGA-D5-6924-01 6 32945306 32945306 C T BRD2 Missense_Mutation p.P430S 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-D5-6924-01 6 33636332 33636332 A T ITPR3 Missense_Mutation p.I643F 0.19 deleterious(0.04) benign(0.431) TCGA-D5-6924-01 6 35840499 35840499 G A SRPK1 Nonsense_Mutation p.Q198* 0.41 TCGA-D5-6924-01 6 65612039 65612039 T C EYS Missense_Mutation p.K938R 0.20 tolerated(0.24) benign(0.271) TCGA-D5-6924-01 7 100349629 100349629 C A ZAN Missense_Mutation p.T634N 0.34 benign(0.22) TCGA-D5-6924-01 7 100349633 100349633 T G ZAN Missense_Mutation p.I635M 0.35 benign(0.247) TCGA-D5-6924-01 7 117003505 117003505 A T ASZ1 3'UTR 0.29 TCGA-D5-6924-01 7 129944399 129944399 C T CPA4 Missense_Mutation p.R156W 0.05 deleterious(0.01) possibly_damaging(0.8) TCGA-D5-6924-01 7 146818099 146818099 C T CNTNAP2 Silent p.G261G 0.33 TCGA-D5-6924-01 7 154862697 154862697 C T HTR5A Missense_Mutation p.R30C 0.60 deleterious(0.05) benign(0.339) TCGA-D5-6924-01 7 35242082 35242082 C T TBX20 Missense_Mutation p.G435E 0.10 deleterious_low_confidence(0) possibly_damaging(0.767) TCGA-D5-6924-01 7 37780907 37780907 C T GPR141 Silent p.C304C 0.17 TCGA-D5-6924-01 7 5540277 5540277 C A FBXL18 Silent p.L541L 0.28 TCGA-D5-6924-01 7 92869207 92869207 G T CCDC132 Missense_Mutation p.S21I 0.24 tolerated_low_confidence(0.19) benign(0.004) TCGA-D5-6924-01 7 98449171 98449171 G A TMEM130 Silent p.S293S 0.36 TCGA-D5-6924-01 7 99769059 99769059 C T GPC2 Silent p.R437R 0.46 TCGA-D5-6924-01 8 143857397 143857397 G A LYNX1 5'UTR 0.11 TCGA-D5-6924-01 8 20110516 20110516 G A LZTS1 Missense_Mutation p.P309L 0.53 tolerated(1) benign(0) TCGA-D5-6924-01 8 21905750 21905750 C A FGF17 Missense_Mutation p.P214H 0.18 deleterious(0) probably_damaging(0.953) TCGA-D5-6924-01 8 57218221 57218221 A T SDR16C5 Silent p.A257A 0.07 TCGA-D5-6924-01 8 67064825 67064825 C A TRIM55 Missense_Mutation p.P400Q 0.19 tolerated(0.1) benign(0.33) TCGA-D5-6924-01 8 7308264 7308264 G C SPAG11B Missense_Mutation p.P125A 0.08 tolerated_low_confidence(0.22) benign(0.291) TCGA-D5-6924-01 8 7718326 7718326 C G SPAG11A Intron 0.12 TCGA-D5-6924-01 8 77766976 77766976 C T ZFHX4 Missense_Mutation p.R2607C 0.22 probably_damaging(0.995) TCGA-D5-6924-01 9 116136219 116136219 C T HDHD3 Missense_Mutation p.R139Q 0.57 tolerated(0.29) benign(0.005) TCGA-D5-6924-01 9 119115098 119115098 G A PAPPA Missense_Mutation p.A1360T 0.06 tolerated(0.14) benign(0.026) TCGA-D5-6924-01 9 125887791 125887791 A C STRBP 3'UTR 0.49 TCGA-D5-6924-01 9 94172919 94172919 G A NFIL3 Missense_Mutation p.T33M 0.53 tolerated(0.1) possibly_damaging(0.542) TCGA-D5-6924-01 X 110406245 110406245 A - PAK3 Frame_Shift_Del p.I227Sfs*56 0.10 TCGA-D5-6924-01 X 142113771 142113771 A T SPANXN4 5'UTR 0.81 TCGA-D5-6924-01 X 148564645 148564645 C T IDS Missense_Mutation p.V218I 0.82 tolerated(0.15) benign(0.036) TCGA-D5-6924-01 X 152914841 152914841 C T DUSP9 Silent p.S176S 0.78 TCGA-D5-6924-01 X 79698381 79698381 G A FAM46D Missense_Mutation p.D115N 0.32 tolerated(0.06) benign(0.21) TCGA-D5-6926-01 10 102116360 102116360 A G SCD Missense_Mutation p.E240G 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6926-01 10 106959853 106959853 G C SORCS3 Missense_Mutation p.Q702H 0.14 deleterious(0.01) benign(0.276) TCGA-D5-6926-01 10 115806318 115806318 A C ADRB1 3'UTR 0.12 TCGA-D5-6926-01 10 118215287 118215287 A G PNLIPRP3 Silent p.G170G 0.08 TCGA-D5-6926-01 10 75568149 75568149 C T NDST2 5'UTR 0.14 TCGA-D5-6926-01 10 97698211 97698211 T C C10orf131 3'UTR 0.41 TCGA-D5-6926-01 11 116692268 116692268 C T APOA4 Missense_Mutation p.R169Q 0.59 tolerated(0.55) benign(0.079) TCGA-D5-6926-01 11 56468570 56468570 C A OR9G1 Missense_Mutation p.A236D 0.10 deleterious(0) probably_damaging(0.991) TCGA-D5-6926-01 11 63765099 63765099 A C OTUB1 3'UTR 0.33 TCGA-D5-6926-01 11 7064630 7064630 C G NLRP14 Missense_Mutation p.S458C 0.23 deleterious(0) possibly_damaging(0.868) TCGA-D5-6926-01 11 94528273 94528273 A G AMOTL1 Missense_Mutation p.H49R 0.19 tolerated_low_confidence(0.14) benign(0) TCGA-D5-6926-01 12 100709423 100709423 C G SCYL2 Missense_Mutation p.L395V 0.16 tolerated(0.06) benign(0.248) TCGA-D5-6926-01 12 108985733 108985733 G A TMEM119 Missense_Mutation p.R143W 0.14 deleterious(0) probably_damaging(0.999) TCGA-D5-6926-01 12 123794121 123794121 G C SBNO1 Missense_Mutation p.S1151C 0.33 deleterious(0.02) benign(0.065) TCGA-D5-6926-01 12 124298029 124298029 C T DNAH10 Missense_Mutation p.R1037C 0.39 benign(0.39) TCGA-D5-6926-01 12 39751232 39751232 C G KIF21A Missense_Mutation p.R408T 0.11 deleterious(0) probably_damaging(0.997) TCGA-D5-6926-01 12 54960852 54960852 G A PDE1B Missense_Mutation p.V70I 0.47 tolerated(0.08) benign(0.028) TCGA-D5-6926-01 12 57663179 57663179 A G R3HDM2 Silent p.Y533Y 0.54 TCGA-D5-6926-01 12 78531008 78531008 G A NAV3 Missense_Mutation p.R1498H 0.39 deleterious(0) probably_damaging(0.999) TCGA-D5-6926-01 12 78531101 78531101 G A NAV3 Missense_Mutation p.R1529H 0.25 deleterious(0) probably_damaging(0.999) TCGA-D5-6926-01 13 23903593 23903593 T A SACS 3'UTR 0.09 TCGA-D5-6926-01 13 26349043 26349043 G A ATP8A2 Silent p.V875V 0.55 TCGA-D5-6926-01 13 70681805 70681805 G A KLHL1 Silent p.F9F 0.32 TCGA-D5-6926-01 13 78492350 78492350 G T EDNRB Missense_Mutation p.S210Y 0.21 deleterious(0.01) probably_damaging(0.946) TCGA-D5-6926-01 13 78493786 78493786 C T EDNRB 5'UTR 0.47 TCGA-D5-6926-01 14 105207003 105207003 G A ADSSL1 Missense_Mutation p.R224H 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6926-01 14 64727335 64727335 C T ESR2 Missense_Mutation p.A262T 0.38 tolerated(0.28) benign(0) TCGA-D5-6926-01 14 79181293 79181293 C T NRXN3 Missense_Mutation p.R246C 0.40 deleterious(0) probably_damaging(0.994) TCGA-D5-6926-01 14 92909807 92909807 G A SLC24A4 Missense_Mutation p.V216M 0.13 tolerated(0.06) possibly_damaging(0.879) TCGA-D5-6926-01 14 93182482 93182482 T C LGMN Missense_Mutation p.S135G 0.10 deleterious(0.03) possibly_damaging(0.651) TCGA-D5-6926-01 15 101827887 101827887 T C SNRPA1 Silent p.A110A 0.15 TCGA-D5-6926-01 15 33954641 33954641 C T RYR3 Missense_Mutation p.T1637I 0.22 benign(0.326) TCGA-D5-6926-01 15 39546016 39546016 C A C15orf54 3'UTR 0.11 TCGA-D5-6926-01 15 49623991 49623991 A C FAM227B Missense_Mutation p.F469V 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6926-01 15 52058677 52058677 G - TMOD2 Frame_Shift_Del p.N14Tfs*16 0.23 TCGA-D5-6926-01 15 72875685 72875685 A C ARIH1 3'UTR 0.27 TCGA-D5-6926-01 15 79056345 79056345 C T ADAMTS7 Missense_Mutation p.G1506R 0.22 tolerated(0.36) probably_damaging(1) TCGA-D5-6926-01 15 79296186 79296186 T C RASGRF1 Missense_Mutation p.T819A 0.12 tolerated(1) benign(0) TCGA-D5-6926-01 16 11864753 11864753 C G ZC3H7A Missense_Mutation p.G332R 0.32 tolerated(0.19) possibly_damaging(0.467) TCGA-D5-6926-01 16 65005481 65005481 C T CDH11 Splice_Site p.X548_splice 0.36 TCGA-D5-6926-01 16 87871538 87871538 G A SLC7A5 Silent p.F351F 0.22 TCGA-D5-6926-01 17 33771685 33771685 G A SLFN13 Missense_Mutation p.R339C 0.13 tolerated(0.2) benign(0.001) TCGA-D5-6926-01 17 36358861 36358861 T G RP11-1407O15.2 Missense_Mutation p.Q277P 0.13 TCGA-D5-6926-01 17 38319770 38319770 C T CASC3 Silent p.N274N 0.12 TCGA-D5-6926-01 17 68175694 68175694 T C KCNJ2 3'UTR 0.22 TCGA-D5-6926-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.59 tolerated(0.13) possibly_damaging(0.631) TCGA-D5-6926-01 18 14511940 14511940 A G POTEC Missense_Mutation p.L529S 0.10 deleterious_low_confidence(0) benign(0.003) TCGA-D5-6926-01 19 10097090 10097090 G A COL5A3 Silent p.P751P 0.16 TCGA-D5-6926-01 19 11537784 11537784 C T CCDC151 Missense_Mutation p.R174Q 0.46 tolerated(0.15) possibly_damaging(0.493) TCGA-D5-6926-01 19 11708441 11708441 A T ZNF627 5'UTR 0.17 TCGA-D5-6926-01 19 12059708 12059708 C G ZNF700 Missense_Mutation p.S290C 0.09 tolerated(0.06) possibly_damaging(0.827) TCGA-D5-6926-01 19 16515539 16515539 G A EPS15L1 Missense_Mutation p.R430W 0.30 deleterious(0) probably_damaging(0.997) TCGA-D5-6926-01 19 17983439 17983439 T C SLC5A5 Missense_Mutation p.L104P 0.08 deleterious(0) probably_damaging(0.969) TCGA-D5-6926-01 19 35616166 35616166 G A LGI4 Silent p.F515F 0.41 TCGA-D5-6926-01 19 47219575 47219575 C A PRKD2 Missense_Mutation p.G18V 0.47 tolerated_low_confidence(0.1) unknown(0) TCGA-D5-6926-01 19 52439414 52439414 C G ZNF613 5'UTR 0.27 TCGA-D5-6926-01 19 54387462 54387462 G C PRKCG Missense_Mutation p.E84Q 0.12 tolerated(0.35) benign(0.016) TCGA-D5-6926-01 19 54783868 54783868 C T LILRB2 Missense_Mutation p.V45I 0.36 deleterious(0) possibly_damaging(0.641) TCGA-D5-6926-01 19 55527045 55527045 A T GP6 Splice_Site p.X260_splice 0.22 TCGA-D5-6926-01 19 56969528 56969528 A G ZNF667 Silent p.A83A 0.12 TCGA-D5-6926-01 19 620466 620466 C T POLRMT Missense_Mutation p.A888T 0.39 tolerated(0.3) possibly_damaging(0.624) TCGA-D5-6926-01 19 7589847 7589847 A G MCOLN1 Missense_Mutation p.E11G 0.08 tolerated(0.08) benign(0.019) TCGA-D5-6926-01 19 9018506 9018506 C T MUC16 Silent p.K12556K 0.39 TCGA-D5-6926-01 1 12919679 12919679 G A PRAMEF2 Missense_Mutation p.R140K 0.15 tolerated(0.07) possibly_damaging(0.886) TCGA-D5-6926-01 1 152193448 152193448 G A HRNR Silent p.D219D 0.34 TCGA-D5-6926-01 1 155166948 155166948 A G THBS3 Silent p.T852T 0.21 TCGA-D5-6926-01 1 157667625 157667625 G C FCRL3 Missense_Mutation p.T128S 0.15 tolerated(0.1) benign(0.026) TCGA-D5-6926-01 1 162750028 162750028 G A DDR2 Missense_Mutation p.D854N 0.28 tolerated_low_confidence(0.08) benign(0.027) TCGA-D5-6926-01 1 183191271 183191271 C T LAMC2 Missense_Mutation p.L230F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6926-01 1 186283036 186283036 C G TPR 3'UTR 0.24 TCGA-D5-6926-01 1 201869048 201869048 C T LMOD1 Missense_Mutation p.A365T 0.35 probably_damaging(0.95) TCGA-D5-6926-01 1 228602773 228602773 T C TRIM17 Translation_Start_Site p.M1? 0.13 deleterious(0) probably_damaging(0.965) TCGA-D5-6926-01 1 26648373 26648373 G T AIM1L 3'UTR 0.38 TCGA-D5-6926-01 1 36023812 36023812 T C NCDN Silent p.A7A 0.11 TCGA-D5-6926-01 1 36646057 36646057 G A MAP7D1 3'UTR 0.31 TCGA-D5-6926-01 1 39888087 39888087 G T MACF1 Missense_Mutation p.L3224F 0.26 probably_damaging(0.999) TCGA-D5-6926-01 1 78034149 78034149 A C ZZZ3 Missense_Mutation p.D778E 0.14 tolerated(0.1) possibly_damaging(0.604) TCGA-D5-6926-01 20 43726694 43726694 T C KCNS1 Missense_Mutation p.H240R 0.09 deleterious(0) possibly_damaging(0.726) TCGA-D5-6926-01 20 62166307 62166307 G A PTK6 Silent p.A112A 0.13 TCGA-D5-6926-01 21 32127655 32127655 G A KRTAP21-1 Silent p.S14S 0.17 TCGA-D5-6926-01 22 23055666 23055666 A G IGLV3-21 Missense_Mutation p.D110G 0.14 deleterious(0.01) benign(0.43) TCGA-D5-6926-01 22 24622169 24622169 C A GGT5 Silent p.R368R 0.09 TCGA-D5-6926-01 22 24921881 24921881 A C UPB1 3'UTR 0.35 TCGA-D5-6926-01 22 40758996 40758996 T G ADSL Missense_Mutation p.L341W 0.34 deleterious(0) probably_damaging(1) TCGA-D5-6926-01 2 170066030 170066030 C A LRP2 Silent p.L2134L 0.17 TCGA-D5-6926-01 2 176046183 176046183 C T ATP5G3 5'UTR 0.10 TCGA-D5-6926-01 2 178879163 178879163 C T PDE11A Missense_Mutation p.D313N 0.35 deleterious(0) probably_damaging(0.989) TCGA-D5-6926-01 2 179664239 179664239 G A TTN Missense_Mutation p.R297W 0.29 TCGA-D5-6926-01 2 180310299 180310299 T G ZNF385B Missense_Mutation p.N358T 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6926-01 2 185800867 185800867 A T ZNF804A Missense_Mutation p.R248S 0.20 deleterious(0) probably_damaging(0.966) TCGA-D5-6926-01 2 185803804 185803804 C T ZNF804A 3'UTR 0.39 TCGA-D5-6926-01 2 23980963 23980963 G A ATAD2B Missense_Mutation p.R1135W 0.32 deleterious(0) possibly_damaging(0.846) TCGA-D5-6926-01 2 242148960 242148960 G A ANO7 Silent p.P477P 0.47 TCGA-D5-6926-01 2 70903803 70903803 C T ADD2 Intron 0.35 TCGA-D5-6926-01 2 74042405 74042405 C A C2orf78 Missense_Mutation p.P352Q 0.18 tolerated(0.1) possibly_damaging(0.604) TCGA-D5-6926-01 2 74751208 74751208 G C DQX1 Missense_Mutation p.P220A 0.27 deleterious(0.03) benign(0.341) TCGA-D5-6926-01 3 100712148 100712148 G T ABI3BP Splice_Site p.X34_splice 0.17 TCGA-D5-6926-01 3 108110669 108110669 C T MYH15 Missense_Mutation p.A1810T 0.07 deleterious(0.02) benign(0.005) TCGA-D5-6926-01 3 111899408 111899408 T C SLC9C1 Intron 0.15 TCGA-D5-6926-01 3 138724710 138724710 T C PRR23A Missense_Mutation p.D134G 0.15 tolerated(0.42) probably_damaging(0.966) TCGA-D5-6926-01 3 14708991 14708991 A G CCDC174 Missense_Mutation p.K262R 0.17 deleterious(0.05) possibly_damaging(0.874) TCGA-D5-6926-01 3 148924063 148924063 C T CP Missense_Mutation p.R367H 0.17 tolerated(0.17) benign(0) TCGA-D5-6926-01 3 196460860 196460860 T A PIGX 3'Flank 0.34 TCGA-D5-6926-01 3 29476352 29476352 T G RBMS3 Missense_Mutation p.I65S 0.29 deleterious(0) probably_damaging(0.999) TCGA-D5-6926-01 4 109971320 109971320 C T COL25A1 Missense_Mutation p.R128Q 0.15 tolerated(0.15) unknown(0) TCGA-D5-6926-01 4 145032288 145032288 C A GYPA 3'UTR 0.28 TCGA-D5-6926-01 4 184930517 184930517 G A STOX2 Missense_Mutation p.G176R 0.19 tolerated(0.08) possibly_damaging(0.895) TCGA-D5-6926-01 4 186379817 186379817 G A CCDC110 Missense_Mutation p.L642F 0.40 tolerated(0.1) benign(0.114) TCGA-D5-6926-01 4 65147274 65147274 T C TECRL Missense_Mutation p.N279S 0.43 tolerated(1) benign(0.011) TCGA-D5-6926-01 4 72204923 72204923 T - SLC4A4 Intron 0.20 TCGA-D5-6926-01 5 109941873 109941873 G C TMEM232 Missense_Mutation p.Q340E 0.20 tolerated(0.22) benign(0.014) TCGA-D5-6926-01 5 112128191 112128191 C T APC Nonsense_Mutation p.R232* 0.31 TCGA-D5-6926-01 5 112175162 112175162 C T APC Nonsense_Mutation p.Q1291* 0.23 TCGA-D5-6926-01 5 112176926 112176926 G T APC Missense_Mutation p.A1879S 0.17 benign(0.289) TCGA-D5-6926-01 5 140554723 140554723 C T PCDHB7 Silent p.I769I 0.21 TCGA-D5-6926-01 5 140751755 140751755 G T PCDHGB3 Silent p.S598S 0.29 TCGA-D5-6926-01 5 145442111 145442111 G A SH3RF2 Silent p.A679A 0.29 TCGA-D5-6926-01 5 145719440 145719440 C T POU4F3 Silent p.G150G 0.25 TCGA-D5-6926-01 5 150657218 150657218 G A SLC36A3 Silent p.V424V 0.58 TCGA-D5-6926-01 5 2749884 2749884 C T IRX2 Silent p.A89A 0.40 TCGA-D5-6926-01 5 54405875 54405875 C T GZMA Silent p.C218C 0.25 TCGA-D5-6926-01 6 102337644 102337644 G A GRIK2 Missense_Mutation p.V552I 0.31 deleterious(0.03) benign(0.277) TCGA-D5-6926-01 6 10928674 10928674 G A SYCP2L Silent p.P493P 0.37 TCGA-D5-6926-01 6 119228582 119228582 T A ASF1A Missense_Mutation p.L140M 0.16 deleterious(0) probably_damaging(0.995) TCGA-D5-6926-01 6 125144472 125144472 T G NKAIN2 3'UTR 0.18 TCGA-D5-6926-01 6 350913 350913 C T DUSP22 3'UTR 0.10 TCGA-D5-6926-01 6 35209602 35209602 G A SCUBE3 Silent p.T444T 0.44 TCGA-D5-6926-01 6 36260864 36260864 G A PNPLA1 Silent p.P155P 0.31 TCGA-D5-6926-01 6 38747798 38747798 G A DNAH8 Missense_Mutation p.R482H 0.24 benign(0.005) TCGA-D5-6926-01 6 53519024 53519024 C T KLHL31 Silent p.T349T 0.29 TCGA-D5-6926-01 6 75828853 75828853 G T COL12A1 Silent p.G2420G 0.16 TCGA-D5-6926-01 7 107752292 107752292 G T LAMB4 Missense_Mutation p.P98T 0.34 deleterious(0.03) benign(0.227) TCGA-D5-6926-01 7 129929471 129929471 A G CPA2 Missense_Mutation p.R382G 0.13 deleterious(0.03) possibly_damaging(0.783) TCGA-D5-6926-01 7 14622742 14622742 A C DGKB Missense_Mutation p.V486G 0.10 deleterious(0.02) possibly_damaging(0.833) TCGA-D5-6926-01 7 17930097 17930097 A T SNX13 Missense_Mutation p.F110Y 0.13 tolerated(0.77) benign(0.012) TCGA-D5-6926-01 7 4026857 4026857 T G SDK1 Silent p.P678P 0.10 TCGA-D5-6926-01 7 42006197 42006197 G A GLI3 Missense_Mutation p.T825M 0.42 tolerated(0.07) possibly_damaging(0.816) TCGA-D5-6926-01 7 5925933 5925933 C - OCM 3'UTR 0.62 TCGA-D5-6926-01 7 5942362 5942387 AATTCTTCCATCGGGTAAGTATTTTG - CCZ1 Splice_Site p.X171_splice 0.37 TCGA-D5-6926-01 7 6226742 6226742 G A CYTH3 Missense_Mutation p.T63M 0.11 tolerated(0.27) benign(0.314) TCGA-D5-6926-01 7 91667980 91667980 T G AKAP9 Nonsense_Mutation p.L1529* 0.13 TCGA-D5-6926-01 7 93519524 93519524 A G TFPI2 Missense_Mutation p.Y66H 0.20 deleterious(0) probably_damaging(0.961) TCGA-D5-6926-01 8 10583958 10583958 G A SOX7 Missense_Mutation p.R205W 0.31 deleterious(0.02) possibly_damaging(0.906) TCGA-D5-6926-01 8 109796145 109796145 G A TMEM74 3'UTR 0.44 TCGA-D5-6926-01 8 113332153 113332153 G A CSMD3 Missense_Mutation p.T2408M 0.11 tolerated(0.22) possibly_damaging(0.69) TCGA-D5-6926-01 8 113364753 113364753 C G CSMD3 Missense_Mutation p.L2049F 0.07 deleterious(0) possibly_damaging(0.905) TCGA-D5-6926-01 8 124243797 124243797 C T C8orf76 Silent p.A186A 0.62 TCGA-D5-6926-01 8 133196545 133196545 G A KCNQ3 Nonsense_Mutation p.R183* 0.19 TCGA-D5-6926-01 8 37704373 37704373 T A BRF2 Missense_Mutation p.S179C 0.35 tolerated(0.05) probably_damaging(0.981) TCGA-D5-6926-01 8 55537788 55537788 C A RP1 Missense_Mutation p.P449H 0.27 deleterious(0) probably_damaging(0.997) TCGA-D5-6926-01 8 68178377 68178377 C T ARFGEF1 Missense_Mutation p.G663R 0.17 tolerated(0.05) possibly_damaging(0.88) TCGA-D5-6926-01 8 87623893 87623893 C T CNGB3 Missense_Mutation p.D529N 0.18 deleterious(0) probably_damaging(0.964) TCGA-D5-6926-01 8 87683257 87683257 C A CNGB3 Silent p.V136V 0.38 TCGA-D5-6926-01 9 100258210 100258210 A G TDRD7 3'UTR 0.16 TCGA-D5-6926-01 9 104171534 104171534 G A ZNF189 Missense_Mutation p.R495Q 0.19 tolerated(0.66) benign(0.322) TCGA-D5-6926-01 9 137712052 137712052 G A COL5A1 Missense_Mutation p.G1513S 0.21 unknown(0) TCGA-D5-6926-01 9 138853013 138853013 C T UBAC1 5'UTR 0.29 TCGA-D5-6926-01 9 140109369 140109369 C T NDOR1 Missense_Mutation p.L322F 0.57 tolerated(0.06) benign(0.162) TCGA-D5-6926-01 9 35381683 35381683 G A UNC13B Missense_Mutation p.R792H 0.17 deleterious(0) probably_damaging(0.999) TCGA-D5-6926-01 9 71833276 71833277 - T TJP2 Splice_Site p.X145_splice 0.36 TCGA-D5-6926-01 9 95778078 95778078 C T FGD3 Silent p.S414S 0.22 TCGA-D5-6926-01 X 129205116 129205116 T C ELF4 Silent p.K236K 0.83 TCGA-D5-6926-01 X 136112327 136112327 C T GPR101 Missense_Mutation p.D503N 0.32 tolerated_low_confidence(0.14) benign(0.008) TCGA-D5-6926-01 X 18751913 18751913 T A PPEF1 Missense_Mutation p.H74Q 0.19 tolerated(0.41) benign(0.012) TCGA-D5-6926-01 X 3235332 3235332 G A MXRA5 Silent p.S2130S 0.65 TCGA-D5-6926-01 X 49646647 49646647 G A USP27X 3'UTR 0.48 TCGA-D5-6926-01 X 72297897 72297897 C A PABPC1L2A 3'UTR 0.35 TCGA-D5-6927-01 10 102778689 102778689 C T PDZD7 Missense_Mutation p.G405D 0.09 tolerated(0.06) benign(0.002) TCGA-D5-6927-01 10 103825903 103825903 C T HPS6 Silent p.G224G 0.28 TCGA-D5-6927-01 10 103909007 103909007 G A PPRC1 Silent p.L1604L 0.23 TCGA-D5-6927-01 10 104174959 104174959 G - PSD Frame_Shift_Del p.P262Hfs*32 0.19 TCGA-D5-6927-01 10 104180799 104180799 G A FBXL15 5'UTR 0.31 TCGA-D5-6927-01 10 104183006 104183006 T C CUEDC2 3'UTR 0.13 TCGA-D5-6927-01 10 1063183 1063183 C T GTPBP4 3'UTR 0.24 TCGA-D5-6927-01 10 124458005 124458005 C A C10orf120 Splice_Site p.X85_splice 0.28 TCGA-D5-6927-01 10 124909153 124909153 G A HMX2 Silent p.S112S 0.26 TCGA-D5-6927-01 10 126086643 126086643 T C OAT Silent p.R396R 0.10 TCGA-D5-6927-01 10 126691557 126691557 G A CTBP2 Silent p.N650N 0.44 TCGA-D5-6927-01 10 127697110 127697110 G A FANK1 Silent p.T280T 0.20 TCGA-D5-6927-01 10 134008395 134008395 C T DPYSL4 Silent p.Y120Y 0.25 TCGA-D5-6927-01 10 13699388 13699388 C T FRMD4A Missense_Mutation p.R734Q 0.24 tolerated(0.33) benign(0.007) TCGA-D5-6927-01 10 14867561 14867561 C T CDNF Missense_Mutation p.R101H 0.20 deleterious(0.04) benign(0.328) TCGA-D5-6927-01 10 22605308 22605308 T C COMMD3 5'UTR 0.20 TCGA-D5-6927-01 10 25314830 25314830 A G THNSL1 3'UTR 0.21 TCGA-D5-6927-01 10 27687469 27687470 - T PTCHD3 Frame_Shift_Ins p.N686Kfs*6 0.27 TCGA-D5-6927-01 10 29754534 29754534 C T SVIL Silent p.A2041A 0.28 TCGA-D5-6927-01 10 30658022 30658022 C T AL161651.1 5'Flank 0.21 TCGA-D5-6927-01 10 31137562 31137562 C A ZNF438 Missense_Mutation p.R591M 0.28 deleterious(0) probably_damaging(0.976) TCGA-D5-6927-01 10 33196017 33196017 C T ITGB1 Intron 0.24 TCGA-D5-6927-01 10 33211651 33211651 T C ITGB1 Missense_Mutation p.I319V 0.24 tolerated(1) benign(0.122) TCGA-D5-6927-01 10 43015445 43015445 T C ZNF37BP RNA 0.09 TCGA-D5-6927-01 10 45939260 45939260 C T ALOX5 Missense_Mutation p.A553V 0.30 deleterious(0) probably_damaging(0.994) TCGA-D5-6927-01 10 49943924 49943924 G T WDFY4 Splice_Site p.X563_splice 0.37 TCGA-D5-6927-01 10 49984993 49984993 C T WDFY4 Missense_Mutation p.S1021L 0.29 deleterious(0) probably_damaging(0.973) TCGA-D5-6927-01 10 5782380 5782380 T C FAM208B Silent p.C749C 0.10 TCGA-D5-6927-01 10 60027393 60027393 C T IPMK 5'UTR 0.19 TCGA-D5-6927-01 10 61832090 61832090 T - ANK3 Frame_Shift_Del p.K2850Rfs*29 0.08 TCGA-D5-6927-01 10 63995965 63995965 T G RTKN2 Missense_Mutation p.E182D 0.24 tolerated(0.11) benign(0.308) TCGA-D5-6927-01 10 70719819 70719819 A - DDX21 Frame_Shift_Del p.N117Mfs*9 0.20 TCGA-D5-6927-01 10 72468406 72468406 G A ADAMTS14 Missense_Mutation p.E248K 0.27 tolerated(0.29) possibly_damaging(0.611) TCGA-D5-6927-01 10 7423862 7423862 C T SFMBT2 5'UTR 0.39 TCGA-D5-6927-01 10 83635907 83635907 A G NRG3 Missense_Mutation p.S271G 0.36 tolerated(0.11) benign(0.001) TCGA-D5-6927-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.23 TCGA-D5-6927-01 10 89720812 89720812 A - PTEN Frame_Shift_Del p.N323Mfs*21 0.21 TCGA-D5-6927-01 10 93579253 93579253 A - TNKS2 Frame_Shift_Del p.M193* 0.24 TCGA-D5-6927-01 10 94243045 94243045 A - IDE Frame_Shift_Del p.L569Cfs*45 0.29 TCGA-D5-6927-01 10 94714499 94714499 G A EXOC6 Splice_Site p.X546_splice 0.18 TCGA-D5-6927-01 10 97923449 97923449 A - ZNF518A RNA 0.17 TCGA-D5-6927-01 10 99211872 99211872 T C ZDHHC16 Missense_Mutation p.L90P 0.26 deleterious(0) probably_damaging(0.996) TCGA-D5-6927-01 10 99655051 99655051 C A CRTAC1 Silent p.G479G 0.15 TCGA-D5-6927-01 11 101341944 101341944 T - TRPC6 Frame_Shift_Del p.G794Vfs*8 0.22 TCGA-D5-6927-01 11 104879572 104879572 A G CASP5 Missense_Mutation p.L61P 0.23 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-D5-6927-01 11 106558291 106558291 C T GUCY1A2 Missense_Mutation p.R759Q 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D5-6927-01 11 118774049 118774051 AGG - BCL9L In_Frame_Del p.P215del 0.21 TCGA-D5-6927-01 11 119227457 119227457 T C USP2 3'UTR 0.20 TCGA-D5-6927-01 11 120690483 120690483 C - GRIK4 Frame_Shift_Del p.P123Qfs*15 0.10 TCGA-D5-6927-01 11 124971169 124971169 A G TMEM218 Silent p.A47A 0.28 TCGA-D5-6927-01 11 125318418 125318418 A G FEZ1 Missense_Mutation p.L381P 0.09 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 11 1261118 1261118 G A MUC5B Missense_Mutation p.G1225R 0.25 unknown(0) TCGA-D5-6927-01 11 130275578 130275578 C T ADAMTS8 Missense_Mutation p.G849R 0.26 deleterious(0.02) possibly_damaging(0.504) TCGA-D5-6927-01 11 133790972 133790972 G A IGSF9B Missense_Mutation p.T883M 0.15 deleterious(0.02) possibly_damaging(0.855) TCGA-D5-6927-01 11 18955969 18955969 G A MRGPRX1 Silent p.C121C 0.07 TCGA-D5-6927-01 11 2154891 2154891 C T IGF2 Silent p.R110R 0.23 TCGA-D5-6927-01 11 22271857 22271857 C A ANO5 Missense_Mutation p.A318D 0.13 deleterious(0) probably_damaging(0.921) TCGA-D5-6927-01 11 22844519 22844519 T - SVIP 3'UTR 0.24 TCGA-D5-6927-01 11 244741 244741 G A PSMD13 Missense_Mutation p.G128R 0.24 tolerated(0.27) benign(0.056) TCGA-D5-6927-01 11 32990615 32990615 A - QSER1 Frame_Shift_Del p.I1584* 0.20 TCGA-D5-6927-01 11 33689665 33689665 A - KIAA1549L Frame_Shift_Del p.K1840Nfs*36 0.20 TCGA-D5-6927-01 11 44331530 44331530 C T ALX4 Missense_Mutation p.R28Q 0.20 tolerated_low_confidence(0.1) possibly_damaging(0.885) TCGA-D5-6927-01 11 4608708 4608708 C T OR52I2 Silent p.P222P 0.23 TCGA-D5-6927-01 11 46744817 46744817 G A F2 Missense_Mutation p.R135H 0.33 deleterious(0.03) benign(0.052) TCGA-D5-6927-01 11 46817230 46817230 C T CKAP5 Missense_Mutation p.A522T 0.24 tolerated(0.28) benign(0) TCGA-D5-6927-01 11 46880451 46880451 G A LRP4 3'UTR 0.29 TCGA-D5-6927-01 11 55032630 55032630 T C TRIM48 Missense_Mutation p.L100P 0.25 deleterious(0.01) benign(0.021) TCGA-D5-6927-01 11 55735918 55735918 A C OR10AG1 Missense_Mutation p.F8V 0.30 deleterious(0.01) possibly_damaging(0.619) TCGA-D5-6927-01 11 558069 558069 G - C11orf35 Intron 0.35 TCGA-D5-6927-01 11 58711064 58711064 G A GLYATL1 Missense_Mutation p.A25T 0.32 tolerated_low_confidence(0.86) benign(0.031) TCGA-D5-6927-01 11 5878162 5878162 A - OR52E8 Frame_Shift_Del p.F257Lfs*9 0.22 TCGA-D5-6927-01 11 5905844 5905844 A G OR52E4 Missense_Mutation p.M108V 0.22 tolerated(0.33) benign(0.001) TCGA-D5-6927-01 11 60201346 60201346 T C MS4A5 Missense_Mutation p.S150P 0.10 tolerated(0.42) possibly_damaging(0.828) TCGA-D5-6927-01 11 62455659 62455660 - G LRRN4CL Frame_Shift_Ins p.F108Lfs*50 0.18 TCGA-D5-6927-01 11 62458259 62458259 C A BSCL2 Nonsense_Mutation p.E385* 0.28 TCGA-D5-6927-01 11 62849131 62849131 C A SLC22A24 Missense_Mutation p.Q431H 0.14 deleterious(0.02) probably_damaging(0.962) TCGA-D5-6927-01 11 63764062 63764062 C T OTUB1 Missense_Mutation p.R94W 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 11 64030131 64030131 C T PLCB3 Nonsense_Mutation p.Q736* 0.41 TCGA-D5-6927-01 11 64757193 64757193 T C BATF2 Missense_Mutation p.H78R 0.39 tolerated(0.33) benign(0.004) TCGA-D5-6927-01 11 65350168 65350168 A G EHBP1L1 Silent p.V675V 0.17 TCGA-D5-6927-01 11 65409799 65409799 G A SIPA1 Missense_Mutation p.S253N 0.35 tolerated(0.05) benign(0.149) TCGA-D5-6927-01 11 65685336 65685336 T C C11orf68 Missense_Mutation p.Q159R 0.24 tolerated(0.34) benign(0.011) TCGA-D5-6927-01 11 66102528 66102528 G A RIN1 Missense_Mutation p.R248C 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6927-01 11 67202460 67202460 C - RPS6KB2 Frame_Shift_Del p.L425Sfs*69 0.10 TCGA-D5-6927-01 11 71238389 71238389 G - KRTAP5-7 Frame_Shift_Del p.G16Afs*159 0.15 TCGA-D5-6927-01 11 74716857 74716857 A G NEU3 Missense_Mutation p.I236V 0.35 tolerated(0.11) benign(0.438) TCGA-D5-6927-01 11 76183825 76183825 T C C11orf30 Missense_Mutation p.V350A 0.18 deleterious(0.02) benign(0.441) TCGA-D5-6927-01 11 76506902 76506902 C T TSKU Missense_Mutation p.P81L 0.08 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 11 78780785 78780785 C T TENM4 Missense_Mutation p.E69K 0.29 tolerated_low_confidence(0.48) benign(0.042) TCGA-D5-6927-01 11 85425537 85425537 A G SYTL2 Silent p.P881P 0.11 TCGA-D5-6927-01 11 86209109 86209109 C T ME3 Missense_Mutation p.G201S 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 11 9608329 9608329 C T WEE1 Silent p.S571S 0.27 TCGA-D5-6927-01 12 102590620 102590620 C T PARPBP 3'Flank 0.14 TCGA-D5-6927-01 12 107126765 107126765 C T RFX4 Missense_Mutation p.S521L 0.28 tolerated(0.34) benign(0.005) TCGA-D5-6927-01 12 107236485 107236485 A - RIC8B Frame_Shift_Del p.T320Qfs*8 0.11 TCGA-D5-6927-01 12 110461850 110461850 G T ANKRD13A Splice_Site p.X245_splice 0.20 TCGA-D5-6927-01 12 112623045 112623045 G A HECTD4 Missense_Mutation p.A3096V 0.25 benign(0.008) TCGA-D5-6927-01 12 112623068 112623068 G A HECTD4 Silent p.G3088G 0.26 TCGA-D5-6927-01 12 118293321 118293321 G A KSR2 Silent p.C128C 0.32 TCGA-D5-6927-01 12 118610390 118610390 G A TAOK3 Missense_Mutation p.H591Y 0.20 tolerated(0.06) benign(0.211) TCGA-D5-6927-01 12 121605337 121605337 G A P2RX7 Missense_Mutation p.R264H 0.11 tolerated(0.08) possibly_damaging(0.631) TCGA-D5-6927-01 12 123352041 123352041 C A VPS37B Missense_Mutation p.Q160H 0.22 deleterious(0) probably_damaging(0.994) TCGA-D5-6927-01 12 124229430 124229430 G A ATP6V0A2 Missense_Mutation p.D506N 0.34 tolerated(0.36) benign(0.004) TCGA-D5-6927-01 12 125267255 125267255 A G SCARB1 Missense_Mutation p.S502P 0.11 tolerated_low_confidence(0.11) benign(0.002) TCGA-D5-6927-01 12 128899998 128899998 C T TMEM132C Silent p.I269I 0.25 TCGA-D5-6927-01 12 130842058 130842058 T C PIWIL1 Missense_Mutation p.L542S 0.30 deleterious(0) probably_damaging(0.921) TCGA-D5-6927-01 12 130855727 130855728 - T PIWIL1 Frame_Shift_Ins p.I779Yfs*10 0.20 TCGA-D5-6927-01 12 132599083 132599083 G A EP400NL 3'UTR 0.32 TCGA-D5-6927-01 12 14929771 14929772 - A H2AFJ 3'UTR 0.23 TCGA-D5-6927-01 12 1920939 1920939 A - CACNA2D4 Intron 0.29 TCGA-D5-6927-01 12 21630862 21630862 C T RECQL Missense_Mutation p.A248T 0.22 tolerated(0.38) benign(0.005) TCGA-D5-6927-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.28 deleterious(0.04) possibly_damaging(0.506) TCGA-D5-6927-01 12 26807043 26807043 C T ITPR2 Missense_Mutation p.R869Q 0.32 deleterious(0.01) possibly_damaging(0.896) TCGA-D5-6927-01 12 27623576 27623576 G A SMCO2 Silent p.T4T 0.33 TCGA-D5-6927-01 12 27924122 27924122 A - MANSC4 Frame_Shift_Del p.Y30Tfs*13 0.08 TCGA-D5-6927-01 12 31586042 31586042 G T DENND5B Intron 0.23 TCGA-D5-6927-01 12 40657686 40657686 C A LRRK2 Missense_Mutation p.L547I 0.23 deleterious(0) probably_damaging(0.997) TCGA-D5-6927-01 12 49948273 49948273 G A KCNH3 Missense_Mutation p.R691H 0.11 tolerated(0.06) benign(0.01) TCGA-D5-6927-01 12 5022175 5022175 G A KCNA1 3'UTR 0.21 TCGA-D5-6927-01 12 50472710 50472710 A G ASIC1 Missense_Mutation p.D333G 0.20 tolerated(0.17) possibly_damaging(0.844) TCGA-D5-6927-01 12 52818501 52818501 C T KRT75 Missense_Mutation p.G486S 0.25 tolerated(0.17) benign(0.021) TCGA-D5-6927-01 12 52825828 52825828 G A KRT75 Missense_Mutation p.R246C 0.26 deleterious(0.02) benign(0.344) TCGA-D5-6927-01 12 54689081 54689081 C A NFE2 5'UTR 0.24 TCGA-D5-6927-01 12 57036348 57036348 C T ATP5B Missense_Mutation p.G323D 0.24 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-D5-6927-01 12 57351358 57351358 A G RDH16 5'UTR 0.32 TCGA-D5-6927-01 12 57605290 57605290 C T LRP1 Missense_Mutation p.A4371V 0.18 benign(0.197) TCGA-D5-6927-01 12 57922490 57922490 G A MBD6 Silent p.R954R 0.27 TCGA-D5-6927-01 12 58025103 58025103 C - B4GALNT1 Frame_Shift_Del p.G88Afs*24 0.48 TCGA-D5-6927-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.18 TCGA-D5-6927-01 12 6424739 6424739 G A PLEKHG6 Missense_Mutation p.C160Y 0.25 tolerated(0.11) benign(0.028) TCGA-D5-6927-01 12 66703513 66703513 C T HELB Nonsense_Mutation p.R269* 0.08 TCGA-D5-6927-01 12 6804207 6804207 G T PIANP Missense_Mutation p.L282M 0.06 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-D5-6927-01 12 6935388 6935388 G A GPR162 Missense_Mutation p.G362D 0.43 tolerated(0.15) probably_damaging(0.916) TCGA-D5-6927-01 12 7015642 7015642 C A LRRC23 Missense_Mutation p.H102Q 0.21 tolerated(0.17) benign(0.105) TCGA-D5-6927-01 12 71977626 71977626 G A LGR5 Silent p.V612V 0.30 TCGA-D5-6927-01 12 7476929 7476929 G T ACSM4 Nonsense_Mutation p.G457* 0.17 TCGA-D5-6927-01 12 76425012 76425013 - T PHLDA1 Frame_Shift_Ins p.C171Vfs*246 0.24 TCGA-D5-6927-01 12 8048316 8048316 T G NANOGP1 RNA 0.24 TCGA-D5-6927-01 12 80648307 80648307 G A OTOGL Silent p.V457V 0.29 TCGA-D5-6927-01 12 83290306 83290306 T - TMTC2 Frame_Shift_Del p.Y457Mfs*6 0.21 TCGA-D5-6927-01 12 8990122 8990122 G A A2ML1 Missense_Mutation p.R272Q 0.28 tolerated(1) benign(0.001) TCGA-D5-6927-01 12 9246142 9246142 A G A2M Missense_Mutation p.L720P 0.09 tolerated(0.43) benign(0.001) TCGA-D5-6927-01 12 96410827 96410827 G A LTA4H Silent p.H314H 0.22 TCGA-D5-6927-01 12 97301551 97301551 C T NEDD1 Intron 0.26 TCGA-D5-6927-01 13 113508799 113508799 C T ATP11A Missense_Mutation p.T733M 0.33 deleterious(0.04) probably_damaging(0.915) TCGA-D5-6927-01 13 114778652 114778652 G A RASA3 Missense_Mutation p.S493F 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6927-01 13 20763049 20763050 - T GJB2 Frame_Shift_Ins p.P225Afs*32 0.23 TCGA-D5-6927-01 13 23909360 23909360 G A SACS Silent p.G2885G 0.27 TCGA-D5-6927-01 13 23911842 23911843 - A SACS Frame_Shift_Ins p.S2058Ffs*2 0.30 TCGA-D5-6927-01 13 28537278 28537278 C - CDX2 Frame_Shift_Del p.V306Cfs*2 0.24 TCGA-D5-6927-01 13 36229087 36229087 C T NBEA Missense_Mutation p.R2690C 0.23 deleterious(0) probably_damaging(0.991) TCGA-D5-6927-01 13 37015272 37015272 T A CCNA1 Missense_Mutation p.S372R 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 13 37393848 37393848 G - RFXAP Frame_Shift_Del p.G120Afs*18 0.26 TCGA-D5-6927-01 13 41639404 41639404 A G WBP4 Silent p.K81K 0.24 TCGA-D5-6927-01 13 45148560 45148560 A G TSC22D1 Missense_Mutation p.S551P 0.21 tolerated(0.54) benign(0.004) TCGA-D5-6927-01 13 45589177 45589177 A G GPALPP1 Missense_Mutation p.R167G 0.25 deleterious(0) probably_damaging(0.931) TCGA-D5-6927-01 13 45602022 45602022 C T GPALPP1 Missense_Mutation p.R303C 0.23 deleterious(0) probably_damaging(0.999) TCGA-D5-6927-01 13 46648073 46648073 T C CPB2 Missense_Mutation p.I176V 0.08 deleterious(0.04) probably_damaging(0.961) TCGA-D5-6927-01 13 52602649 52602649 C T ALG11 Missense_Mutation p.R468C 0.27 deleterious(0) probably_damaging(0.933) TCGA-D5-6927-01 13 75898539 75898539 T G TBC1D4 Splice_Site p.X678_splice 0.26 TCGA-D5-6927-01 14 102493026 102493026 A G DYNC1H1 Missense_Mutation p.H2918R 0.12 probably_damaging(0.955) TCGA-D5-6927-01 14 104165201 104165201 G - XRCC3 Frame_Shift_Del p.S326Pfs*43 0.23 TCGA-D5-6927-01 14 104165699 104165699 A G XRCC3 Splice_Site p.X258_splice 0.25 TCGA-D5-6927-01 14 105269415 105269415 G T ZBTB42 3'UTR 0.41 TCGA-D5-6927-01 14 105418841 105418841 C - AHNAK2 Frame_Shift_Del p.D983Tfs*9 0.18 TCGA-D5-6927-01 14 106237712 106237713 - G IGHG3 Frame_Shift_Ins p.L11Pfs*89 0.19 TCGA-D5-6927-01 14 20389396 20389397 - TC OR4K5 Frame_Shift_Ins p.L214Sfs*34 0.19 TCGA-D5-6927-01 14 20529042 20529042 C T OR4L1 Missense_Mutation p.P280L 0.07 deleterious(0) probably_damaging(0.994) TCGA-D5-6927-01 14 21467995 21467995 G T SLC39A2 Missense_Mutation p.E70D 0.27 tolerated(0.22) possibly_damaging(0.527) TCGA-D5-6927-01 14 23778097 23778097 T C BCL2L2 Missense_Mutation p.S169P 0.24 tolerated(0.21) benign(0.209) TCGA-D5-6927-01 14 24033794 24033794 T C AP1G2 Missense_Mutation p.I300V 0.06 deleterious(0.05) benign(0.056) TCGA-D5-6927-01 14 24108433 24108433 C T DHRS2 Silent p.H62H 0.24 TCGA-D5-6927-01 14 24523623 24523623 C T LRRC16B Missense_Mutation p.R89C 0.35 deleterious(0) probably_damaging(0.928) TCGA-D5-6927-01 14 24769329 24769329 C A NOP9 Missense_Mutation p.L57M 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-D5-6927-01 14 24781177 24781177 A G LTB4R2 3'UTR 0.07 TCGA-D5-6927-01 14 50081025 50081025 T C LRR1 Silent p.D352D 0.08 TCGA-D5-6927-01 14 51057728 51057728 C T ATL1 Nonsense_Mutation p.R118* 0.21 TCGA-D5-6927-01 14 51378942 51378942 T C PYGL Missense_Mutation p.Q567R 0.21 deleterious(0.01) possibly_damaging(0.684) TCGA-D5-6927-01 14 51450120 51450120 T C TRIM9 Intron 0.12 TCGA-D5-6927-01 14 53101864 53101864 T - GPR137C 3'UTR 0.14 TCGA-D5-6927-01 14 55255654 55255654 A G SAMD4A Missense_Mutation p.T717A 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-D5-6927-01 14 61442459 61442459 A C TRMT5 Missense_Mutation p.I393R 0.12 deleterious(0) possibly_damaging(0.824) TCGA-D5-6927-01 14 64153081 64153081 G - SGPP1 Frame_Shift_Del p.I357Lfs*3 0.17 TCGA-D5-6927-01 14 64935817 64935817 G A AKAP5 Silent p.T235T 0.10 TCGA-D5-6927-01 14 65208999 65208999 G A PLEKHG3 Missense_Mutation p.V866I 0.33 deleterious(0.01) probably_damaging(0.921) TCGA-D5-6927-01 14 65544574 65544574 A C MAX Intron 0.22 TCGA-D5-6927-01 14 66953417 66953417 G T LINC00238 RNA 0.23 TCGA-D5-6927-01 14 69521441 69521441 T C DCAF5 Silent p.E654E 0.07 TCGA-D5-6927-01 14 92915440 92915440 T - SLC24A4 Frame_Shift_Del p.F255Sfs*40 0.20 TCGA-D5-6927-01 15 100514672 100514672 G T ADAMTS17 Missense_Mutation p.R1075S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6927-01 15 20644786 20644786 G T HERC2P3 RNA 0.15 TCGA-D5-6927-01 15 22369392 22369392 G A OR4M2 Missense_Mutation p.V273M 0.12 deleterious(0.01) probably_damaging(0.917) TCGA-D5-6927-01 15 22933848 22933848 C T CYFIP1 Missense_Mutation p.T256M 0.23 tolerated(0.12) benign(0.097) TCGA-D5-6927-01 15 34355683 34355683 C T CHRM5 Silent p.R255R 0.15 TCGA-D5-6927-01 15 40557094 40557094 C - PAK6 Frame_Shift_Del p.P38Hfs*30 0.23 TCGA-D5-6927-01 15 40914984 40914984 A - CASC5 Frame_Shift_Del p.K868Sfs*39 0.20 TCGA-D5-6927-01 15 41193115 41193115 C T VPS18 Missense_Mutation p.A700V 0.32 deleterious(0) probably_damaging(0.999) TCGA-D5-6927-01 15 41522694 41522694 C T EXD1 Missense_Mutation p.S4N 0.25 tolerated_low_confidence(0.25) benign(0.007) TCGA-D5-6927-01 15 41809710 41809710 G A RPAP1 3'UTR 0.22 TCGA-D5-6927-01 15 43282261 43282261 A G UBR1 Missense_Mutation p.F1272S 0.18 tolerated(0.2) benign(0.101) TCGA-D5-6927-01 15 49429375 49429375 A T COPS2 Missense_Mutation p.I178N 0.33 deleterious(0.02) possibly_damaging(0.642) TCGA-D5-6927-01 15 51696535 51696535 C T GLDN Nonsense_Mutation p.R414* 0.22 TCGA-D5-6927-01 15 52905953 52905953 G A FAM214A Nonsense_Mutation p.R40* 0.08 TCGA-D5-6927-01 15 56208961 56208961 G A NEDD4 Silent p.S23S 0.26 TCGA-D5-6927-01 15 57524979 57524979 C T TCF12 Missense_Mutation p.R299C 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-D5-6927-01 15 63053905 63053905 A G TLN2 Missense_Mutation p.D1555G 0.20 tolerated(0.29) benign(0.001) TCGA-D5-6927-01 15 66190156 66190156 T C MEGF11 3'UTR 0.36 TCGA-D5-6927-01 15 78562924 78562926 AAG - DNAJA4 In_Frame_Del p.E103del 0.33 TCGA-D5-6927-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.35 TCGA-D5-6927-01 15 84581848 84581848 A G ADAMTSL3 Missense_Mutation p.I569V 0.25 tolerated(0.19) benign(0.076) TCGA-D5-6927-01 15 89444813 89444813 G A MFGE8 Missense_Mutation p.A280V 0.33 deleterious(0) probably_damaging(0.993) TCGA-D5-6927-01 15 90023598 90023598 G A RHCG Silent p.G188G 0.21 TCGA-D5-6927-01 15 90801339 90801339 C T TTLL13 Silent p.I335I 0.20 TCGA-D5-6927-01 15 93467560 93467560 C A CHD2 Silent p.A24A 0.24 TCGA-D5-6927-01 16 10788536 10788536 C T TEKT5 Silent p.P65P 0.37 TCGA-D5-6927-01 16 11001452 11001452 C T CIITA Silent p.A701A 0.35 TCGA-D5-6927-01 16 11944247 11944247 G A RSL1D1 Missense_Mutation p.T45M 0.25 deleterious(0) probably_damaging(0.93) TCGA-D5-6927-01 16 1398511 1398511 G A BAIAP3 3'UTR 0.46 TCGA-D5-6927-01 16 14346333 14346333 C T MKL2 Missense_Mutation p.R843C 0.08 deleterious(0.04) benign(0.112) TCGA-D5-6927-01 16 15027089 15027089 C T NPIPA1 5'Flank 0.08 TCGA-D5-6927-01 16 150497 150497 A G NPRL3 Missense_Mutation p.S214P 0.26 deleterious(0) benign(0.246) TCGA-D5-6927-01 16 15128167 15128167 G C PDXDC1 Missense_Mutation p.V613L 0.28 deleterious(0.01) benign(0.209) TCGA-D5-6927-01 16 1612075 1612075 C A IFT140 Missense_Mutation p.G704C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D5-6927-01 16 2159520 2159520 G A PKD1 Missense_Mutation p.A1883V 0.30 benign(0) TCGA-D5-6927-01 16 2347418 2347418 C A ABCA3 Missense_Mutation p.E725D 0.25 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 16 24580197 24580197 G A RBBP6 Missense_Mutation p.R729Q 0.24 deleterious_low_confidence(0) unknown(0) TCGA-D5-6927-01 16 30096341 30096341 G T PPP4C Silent p.R294R 0.35 TCGA-D5-6927-01 16 30365563 30365563 C A CD2BP2 Missense_Mutation p.E53D 0.28 tolerated(1) benign(0) TCGA-D5-6927-01 16 30386159 30386160 - C MYLPF 5'UTR 0.34 TCGA-D5-6927-01 16 30522245 30522245 G - ITGAL Frame_Shift_Del p.D890Tfs*9 0.11 TCGA-D5-6927-01 16 30982823 30982823 C G SETD1A Silent p.S1047S 0.42 TCGA-D5-6927-01 16 31191517 31191517 T C FUS 5'UTR 0.29 TCGA-D5-6927-01 16 31497527 31497527 G A SLC5A2 Missense_Mutation p.A169T 0.27 deleterious(0.02) probably_damaging(1) TCGA-D5-6927-01 16 4029174 4029174 C T ADCY9 Silent p.S874S 0.17 TCGA-D5-6927-01 16 4438579 4438579 G T CORO7 Silent p.T223T 0.31 TCGA-D5-6927-01 16 49672160 49672160 A G ZNF423 Silent p.P301P 0.19 TCGA-D5-6927-01 16 50245357 50245357 C T PAPD5 Silent p.D239D 0.33 TCGA-D5-6927-01 16 50383976 50383976 T C BRD7 Silent p.E183E 0.24 TCGA-D5-6927-01 16 55601593 55601593 C T CAPNS2 3'UTR 0.23 TCGA-D5-6927-01 16 56536719 56536719 A G BBS2 Missense_Mutation p.V269A 0.23 deleterious(0) possibly_damaging(0.693) TCGA-D5-6927-01 16 57062273 57062273 T C NLRC5 Missense_Mutation p.L740P 0.22 tolerated(0.12) possibly_damaging(0.514) TCGA-D5-6927-01 16 57690153 57690153 C T GPR56 Nonsense_Mutation p.Q345* 0.26 TCGA-D5-6927-01 16 58220681 58220681 A T CSNK2A2 Missense_Mutation p.I99N 0.21 deleterious(0) possibly_damaging(0.517) TCGA-D5-6927-01 16 58557403 58557403 C T CNOT1 Missense_Mutation p.R2263H 0.26 deleterious(0) probably_damaging(0.997) TCGA-D5-6927-01 16 58572108 58572108 C T CNOT1 Missense_Mutation p.R1733H 0.25 deleterious(0.01) benign(0.207) TCGA-D5-6927-01 16 66945942 66945942 C T CDH16 Silent p.T550T 0.23 TCGA-D5-6927-01 16 67005176 67005176 C T CES3 Silent p.D415D 0.22 TCGA-D5-6927-01 16 67662309 67662309 G A CTCF Missense_Mutation p.G519R 0.18 deleterious(0.01) probably_damaging(0.964) TCGA-D5-6927-01 16 67688352 67688352 A G RLTPR Silent p.P1113P 0.16 TCGA-D5-6927-01 16 67693652 67693652 G A ACD Silent p.L183L 0.28 TCGA-D5-6927-01 16 67911683 67911683 A G EDC4 Missense_Mutation p.S277G 0.35 tolerated(0.48) benign(0.016) TCGA-D5-6927-01 16 67985077 67985077 G T SLC12A4 Silent p.T423T 0.23 TCGA-D5-6927-01 16 70506941 70506941 G A FUK Missense_Mutation p.A488T 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 16 70698899 70698899 G A FLJ00418 Missense_Mutation p.A70T 0.19 unknown(0) TCGA-D5-6927-01 16 71101234 71101234 C A HYDIN Missense_Mutation p.E678D 0.33 probably_damaging(0.969) TCGA-D5-6927-01 16 72094487 72094487 G T HP Missense_Mutation p.D307Y 0.30 tolerated(0.06) benign(0.048) TCGA-D5-6927-01 16 72994095 72994095 T C ZFHX3 Splice_Site 0.27 TCGA-D5-6927-01 16 77775705 77775705 C T NUDT7 Missense_Mutation p.T192M 0.24 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 16 78062028 78062028 A G CLEC3A Missense_Mutation p.Q56R 0.29 tolerated(0.16) possibly_damaging(0.628) TCGA-D5-6927-01 16 81094677 81094677 G - C16orf46 3'UTR 0.22 TCGA-D5-6927-01 16 81914551 81914551 A T PLCG2 Missense_Mutation p.I229F 0.05 tolerated(0.35) benign(0.014) TCGA-D5-6927-01 16 84094338 84094338 G A MBTPS1 Missense_Mutation p.R885C 0.26 tolerated(0.05) possibly_damaging(0.735) TCGA-D5-6927-01 16 84214794 84214794 T C TAF1C Splice_Site p.X415_splice 0.13 TCGA-D5-6927-01 16 85840298 85840298 C T COX4I1 Intron 0.33 TCGA-D5-6927-01 16 88495638 88495638 C - ZNF469 Frame_Shift_Del p.S589Afs*143 0.09 TCGA-D5-6927-01 17 11772541 11772541 G A DNAH9 Missense_Mutation p.A3342T 0.20 benign(0.037) TCGA-D5-6927-01 17 15458597 15458597 T C TVP23C-CDRT4 Missense_Mutation p.R32G 0.27 deleterious(0.02) benign(0.033) TCGA-D5-6927-01 17 16049809 16049809 T - NCOR1 Frame_Shift_Del p.V322Wfs*4 0.23 TCGA-D5-6927-01 17 18082062 18082062 G A MYO15A Intron 0.23 TCGA-D5-6927-01 17 19480788 19480788 G A SLC47A1 Silent p.R545R 0.23 TCGA-D5-6927-01 17 20156843 20156843 G A SPECC1 Missense_Mutation p.R875Q 0.36 deleterious(0.04) benign(0.004) TCGA-D5-6927-01 17 2139842 2139842 C T SMG6 Missense_Mutation p.R938H 0.27 tolerated(0.17) possibly_damaging(0.646) TCGA-D5-6927-01 17 2596118 2596118 C T CLUH Missense_Mutation p.E1051K 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 17 2598799 2598799 C T CLUH Missense_Mutation p.A766T 0.23 tolerated(1) benign(0.001) TCGA-D5-6927-01 17 26696389 26696389 C T VTN Missense_Mutation p.R197Q 0.24 tolerated(0.47) benign(0.079) TCGA-D5-6927-01 17 30678933 30678933 T C ZNF207 Splice_Site p.X56_splice 0.25 TCGA-D5-6927-01 17 33767787 33767787 C T SLFN13 Missense_Mutation p.A841T 0.23 deleterious(0.05) benign(0.139) TCGA-D5-6927-01 17 34062228 34062228 G A RASL10B Missense_Mutation p.V9M 0.35 deleterious(0.01) possibly_damaging(0.757) TCGA-D5-6927-01 17 37762258 37762258 G T NEUROD2 Missense_Mutation p.P199T 0.25 deleterious(0) probably_damaging(0.999) TCGA-D5-6927-01 17 38319959 38319959 C T CASC3 Silent p.G337G 0.16 TCGA-D5-6927-01 17 39723830 39723830 C A KRT9 Nonsense_Mutation p.G523* 0.16 TCGA-D5-6927-01 17 39738632 39738632 G A KRT14 3'UTR 0.25 TCGA-D5-6927-01 17 39742775 39742775 A G KRT14 Silent p.F104F 0.22 TCGA-D5-6927-01 17 39975559 39975559 C - FKBP10 Frame_Shift_Del p.G278Afs*20 0.33 TCGA-D5-6927-01 17 40344925 40344925 T C GHDC Missense_Mutation p.Q129R 0.12 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 17 40575004 40575004 C - PTRF Frame_Shift_Del p.A38Pfs*6 0.20 TCGA-D5-6927-01 17 40762211 40762211 T C TUBG1 Silent p.T45T 0.20 TCGA-D5-6927-01 17 4088269 4088269 C T ANKFY1 Missense_Mutation p.A557T 0.27 deleterious(0) probably_damaging(0.994) TCGA-D5-6927-01 17 40997845 40997845 A G AOC2 Missense_Mutation p.Q401R 0.32 tolerated(0.36) benign(0.011) TCGA-D5-6927-01 17 41847171 41847171 C T DUSP3 Missense_Mutation p.V122I 0.30 deleterious(0.05) probably_damaging(0.997) TCGA-D5-6927-01 17 43044901 43044901 G A C1QL1 Silent p.G172G 0.23 TCGA-D5-6927-01 17 4337463 4337463 T C SPNS3 Splice_Site p.X67_splice 0.17 TCGA-D5-6927-01 17 44248974 44248974 C - KANSL1 Frame_Shift_Del p.G179Efs*23 0.12 TCGA-D5-6927-01 17 45569801 45569801 A G MRPL45P2 RNA 0.06 TCGA-D5-6927-01 17 46148812 46148812 T - CBX1 Frame_Shift_Del p.D182Mfs*30 0.09 TCGA-D5-6927-01 17 47780356 47780356 C T SLC35B1 Silent p.T260T 0.23 TCGA-D5-6927-01 17 4797528 4797528 T C MINK1 Silent p.P910P 0.12 TCGA-D5-6927-01 17 49343568 49343568 C T UTP18 Missense_Mutation p.R161W 0.22 deleterious(0.02) benign(0.063) TCGA-D5-6927-01 17 50008347 50008347 T C CA10 Intron 0.23 TCGA-D5-6927-01 17 53828572 53828572 C A PCTP Silent p.T36T 0.16 TCGA-D5-6927-01 17 55028098 55028098 T C COIL Missense_Mutation p.T169A 0.05 tolerated(0.39) benign(0.02) TCGA-D5-6927-01 17 56345256 56345256 A G LPO Silent p.P680P 0.26 TCGA-D5-6927-01 17 56386556 56386556 C T BZRAP1 Silent p.P1359P 0.28 TCGA-D5-6927-01 17 56388380 56388380 C T BZRAP1 Silent p.P1092P 0.31 TCGA-D5-6927-01 17 56569037 56569037 G A MTMR4 Missense_Mutation p.T1192I 0.10 deleterious(0) probably_damaging(0.987) TCGA-D5-6927-01 17 60814862 60814862 T G MARCH10 Intron 0.38 TCGA-D5-6927-01 17 61571285 61571285 C T ACE Missense_Mutation p.H1047Y 0.23 tolerated(0.33) benign(0.002) TCGA-D5-6927-01 17 61994707 61994707 C T GH1 Missense_Mutation p.V206M 0.27 tolerated(1) possibly_damaging(0.864) TCGA-D5-6927-01 17 6607354 6607354 G A SLC13A5 Silent p.G130G 0.24 TCGA-D5-6927-01 17 66550936 66550936 C - FAM20A Frame_Shift_Del p.A208Hfs*8 0.22 TCGA-D5-6927-01 17 66928608 66928608 T C ABCA8 Silent p.G206G 0.27 TCGA-D5-6927-01 17 71167047 71167047 C T SSTR2 3'UTR 0.45 TCGA-D5-6927-01 17 71384123 71384123 G A SDK2 Missense_Mutation p.R1416C 0.14 deleterious(0.03) benign(0.052) TCGA-D5-6927-01 17 7220894 7220894 T C NEURL4 Splice_Site p.X1402_splice 0.34 TCGA-D5-6927-01 17 7318863 7318863 C T NLGN2 Silent p.G357G 0.24 TCGA-D5-6927-01 17 7384749 7384749 C - SLC35G6 5'UTR 0.29 TCGA-D5-6927-01 17 73886938 73886938 G A TRIM65 Silent p.L492L 0.25 TCGA-D5-6927-01 17 75316432 75316432 T C SEPT9 Intron 0.28 TCGA-D5-6927-01 17 76113988 76113988 G A TMC6 Missense_Mutation p.P639L 0.30 deleterious(0) probably_damaging(0.997) TCGA-D5-6927-01 17 76794504 76794504 A G USP36 Nonstop_Mutation p.*1124Rext*56 0.11 TCGA-D5-6927-01 17 7699902 7699902 G A DNAH2 Missense_Mutation p.V2599M 0.16 probably_damaging(0.989) TCGA-D5-6927-01 17 77983987 77983987 C T TBC1D16 Missense_Mutation p.G251S 0.25 tolerated(1) benign(0.003) TCGA-D5-6927-01 17 7802466 7802466 G - CHD3 Frame_Shift_Del p.L824* 0.23 TCGA-D5-6927-01 17 79478310 79478312 GAG - ACTG1 In_Frame_Del p.S235del 0.17 TCGA-D5-6927-01 17 79986488 79986488 G T LRRC45 Splice_Site p.X413_splice 0.38 TCGA-D5-6927-01 17 80332984 80332984 G T UTS2R Missense_Mutation p.G262C 0.44 tolerated(0.09) benign(0.014) TCGA-D5-6927-01 17 8791741 8791741 G A PIK3R5 Missense_Mutation p.R455W 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 17 9801318 9801318 C T RCVRN 3'UTR 0.30 TCGA-D5-6927-01 18 21112179 21112179 A T NPC1 Missense_Mutation p.L1275H 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-D5-6927-01 18 32682088 32682089 - A MAPRE2 Frame_Shift_Ins p.S195Vfs*13 0.18 TCGA-D5-6927-01 18 32826314 32826314 T - ZNF397 3'UTR 0.20 TCGA-D5-6927-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.29 TCGA-D5-6927-01 18 3456473 3456474 TG - TGIF1 Frame_Shift_Del p.V176Afs*9 0.38 TCGA-D5-6927-01 18 42531573 42531573 G A SETBP1 Silent p.P756P 0.19 TCGA-D5-6927-01 18 42643491 42643491 C T SETBP1 Missense_Mutation p.P1540L 0.29 tolerated_low_confidence(0.23) benign(0.017) TCGA-D5-6927-01 18 45566519 45566519 C - ZBTB7C Frame_Shift_Del p.P321Lfs*18 0.33 TCGA-D5-6927-01 18 7033006 7033006 C A LAMA1 Missense_Mutation p.G714C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D5-6927-01 18 70526131 70526131 T C NETO1 Silent p.L133L 0.11 TCGA-D5-6927-01 18 74587521 74587521 C T ZNF236 Silent p.I245I 0.35 TCGA-D5-6927-01 18 74624210 74624210 T C ZNF236 Missense_Mutation p.L937S 0.20 deleterious(0) possibly_damaging(0.558) TCGA-D5-6927-01 18 9122637 9122637 C T NDUFV2 Nonsense_Mutation p.R143* 0.09 TCGA-D5-6927-01 19 10434093 10434093 G - RAVER1 Frame_Shift_Del p.G320Afs*204 0.25 TCGA-D5-6927-01 19 10439684 10439684 C T RAVER1 Silent p.T147T 0.12 TCGA-D5-6927-01 19 1055216 1055216 C T ABCA7 Silent p.P1357P 0.26 TCGA-D5-6927-01 19 10886448 10886448 T C DNM2 Missense_Mutation p.I152T 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 19 11475138 11475138 G A DKFZP761J1410 Silent p.T352T 0.64 TCGA-D5-6927-01 19 13051439 13051439 C - CALR Frame_Shift_Del p.P264Qfs*2 0.17 TCGA-D5-6927-01 19 13220785 13220785 G A TRMT1 Silent p.G350G 0.17 TCGA-D5-6927-01 19 1496352 1496352 C T REEP6 Silent p.V139V 0.21 TCGA-D5-6927-01 19 15535097 15535097 G A WIZ Missense_Mutation p.R708W 0.26 deleterious(0) probably_damaging(0.99) TCGA-D5-6927-01 19 1615535 1615535 C T TCF3 Intron 0.24 TCGA-D5-6927-01 19 1619835 1619835 G A TCF3 Nonsense_Mutation p.R371* 0.25 TCGA-D5-6927-01 19 17305553 17305553 G T MYO9B Missense_Mutation p.S1106I 0.28 tolerated(0.08) benign(0.035) TCGA-D5-6927-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.24 TCGA-D5-6927-01 19 19232127 19232127 G A TMEM161A Missense_Mutation p.R302C 0.20 deleterious(0.01) possibly_damaging(0.532) TCGA-D5-6927-01 19 19371862 19371862 C T HAPLN4 Missense_Mutation p.V82I 0.08 tolerated(1) benign(0.032) TCGA-D5-6927-01 19 19790867 19790867 A - ZNF101 Frame_Shift_Del p.T359Lfs*28 0.25 TCGA-D5-6927-01 19 2099347 2099347 G A IZUMO4 3'UTR 0.16 TCGA-D5-6927-01 19 2338759 2338759 G - SPPL2B RNA 0.27 TCGA-D5-6927-01 19 2413795 2413795 G A TMPRSS9 Missense_Mutation p.R417H 0.18 deleterious(0.05) benign(0.082) TCGA-D5-6927-01 19 30313398 30313398 C T CCNE1 Missense_Mutation p.P333L 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 19 3121251 3121251 C T GNA11 3'UTR 0.47 TCGA-D5-6927-01 19 35176664 35176664 T A ZNF302 3'UTR 0.31 TCGA-D5-6927-01 19 35837101 35837101 A G CD22 Missense_Mutation p.D792G 0.16 deleterious(0.05) benign(0.018) TCGA-D5-6927-01 19 36004069 36004069 G T DMKN Silent p.A103A 0.35 TCGA-D5-6927-01 19 36851423 36851424 - A ZFP14 Frame_Shift_Ins p.S50Ffs*2 0.18 TCGA-D5-6927-01 19 38187978 38187978 C T ZNF607 3'UTR 0.30 TCGA-D5-6927-01 19 38375481 38375481 A G WDR87 3'Flank 0.19 TCGA-D5-6927-01 19 38376035 38376035 T - WDR87 Frame_Shift_Del p.K2720Rfs*57 0.36 TCGA-D5-6927-01 19 38385470 38385470 G A WDR87 Silent p.S252S 0.27 TCGA-D5-6927-01 19 3910800 3910800 G T ATCAY Splice_Site p.X260_splice 0.27 TCGA-D5-6927-01 19 41125314 41125314 G T LTBP4 Missense_Mutation p.G1111C 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 19 42791819 42791819 C T CIC Silent p.G235G 0.24 TCGA-D5-6927-01 19 42872755 42872755 G - MEGF8 Frame_Shift_Del p.G2076Afs*20 0.22 TCGA-D5-6927-01 19 44079577 44079577 A G XRCC1 Missense_Mutation p.C12R 0.32 deleterious(0) probably_damaging(0.912) TCGA-D5-6927-01 19 44501038 44501038 G A ZNF155 Silent p.P354P 0.20 TCGA-D5-6927-01 19 44515439 44515439 G A ZNF230 Silent p.R416R 0.25 TCGA-D5-6927-01 19 45593742 45593742 A G GEMIN7 Missense_Mutation p.I124V 0.22 tolerated(0.54) benign(0.241) TCGA-D5-6927-01 19 47960297 47960297 G A SLC8A2 Silent p.G410G 0.12 TCGA-D5-6927-01 19 48182689 48182689 G - GLTSCR1 Frame_Shift_Del p.G89Afs*88 0.10 TCGA-D5-6927-01 19 49920424 49920424 G A CCDC155 Missense_Mutation p.R483Q 0.29 tolerated_low_confidence(0.4) benign(0) TCGA-D5-6927-01 19 50031848 50031848 T C RCN3 Missense_Mutation p.L40P 0.34 deleterious(0) probably_damaging(0.979) TCGA-D5-6927-01 19 50208276 50208276 G A CPT1C Missense_Mutation p.V262I 0.17 tolerated(0.38) possibly_damaging(0.786) TCGA-D5-6927-01 19 50375100 50375100 G - AKT1S1 Frame_Shift_Del p.F163Sfs*14 0.22 TCGA-D5-6927-01 19 50434180 50434180 G A ATF5 Missense_Mutation p.V25I 0.19 tolerated(0.48) benign(0.137) TCGA-D5-6927-01 19 50909475 50909475 C A POLD1 Missense_Mutation p.L427I 0.33 tolerated(0.92) benign(0.021) TCGA-D5-6927-01 19 51227336 51227336 G T CLEC11A Missense_Mutation p.V108F 0.25 tolerated(0.32) benign(0.005) TCGA-D5-6927-01 19 51870355 51870355 A - CLDND2 3'UTR 0.29 TCGA-D5-6927-01 19 52149129 52149129 G - SIGLEC14 Frame_Shift_Del p.R203Gfs*13 0.25 TCGA-D5-6927-01 19 53270320 53270320 A G ZNF600 Missense_Mutation p.V230A 0.24 tolerated(0.52) benign(0.001) TCGA-D5-6927-01 19 54079990 54079990 A - ZNF331 Frame_Shift_Del p.N61Tfs*5 0.11 TCGA-D5-6927-01 19 54515282 54515282 C - CACNG6 Frame_Shift_Del p.P209Rfs*21 0.16 TCGA-D5-6927-01 19 54967246 54967246 G - LENG8 Frame_Shift_Del p.G377Vfs*32 0.16 TCGA-D5-6927-01 19 55591175 55591175 C T EPS8L1 Nonsense_Mutation p.R79* 0.29 TCGA-D5-6927-01 19 55889045 55889045 G A TMEM190 Missense_Mutation p.C60Y 0.21 deleterious(0) possibly_damaging(0.588) TCGA-D5-6927-01 19 56538399 56538399 C T NLRP5 Missense_Mutation p.A267V 0.25 tolerated(0.89) benign(0.002) TCGA-D5-6927-01 19 57135187 57135187 T C ZNF71 3'UTR 0.05 TCGA-D5-6927-01 19 57765286 57765286 G C ZNF805 Missense_Mutation p.G367R 0.23 deleterious(0.01) possibly_damaging(0.661) TCGA-D5-6927-01 19 58549317 58549317 G A ZSCAN1 Missense_Mutation p.R38H 0.16 tolerated(0.29) benign(0.058) TCGA-D5-6927-01 19 6016190 6016190 C T RFX2 Silent p.E230E 0.21 TCGA-D5-6927-01 19 619266 619266 C T POLRMT Missense_Mutation p.V1033I 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-D5-6927-01 19 6306748 6306748 G A ACER1 Missense_Mutation p.R258W 0.25 deleterious(0.01) benign(0.394) TCGA-D5-6927-01 19 6495628 6495628 G A TUBB4A Silent p.F294F 0.29 TCGA-D5-6927-01 19 6904124 6904124 T C EMR1 Missense_Mutation p.C294R 0.22 deleterious(0) probably_damaging(0.999) TCGA-D5-6927-01 19 757668 757668 A G MISP Missense_Mutation p.N241S 0.13 tolerated(0.07) possibly_damaging(0.481) TCGA-D5-6927-01 19 7619527 7619527 C T PNPLA6 Missense_Mutation p.T861M 0.30 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 19 7975374 7975374 C T MAP2K7 Missense_Mutation p.R162C 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 19 7977252 7977252 C T MAP2K7 Missense_Mutation p.A399V 0.23 tolerated(0.16) benign(0.015) TCGA-D5-6927-01 19 8140007 8140007 G A FBN3 Silent p.R2550R 0.11 TCGA-D5-6927-01 19 8555579 8555579 C T PRAM1 Missense_Mutation p.R602H 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 19 8563922 8563922 G T PRAM1 Missense_Mutation p.P257H 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-D5-6927-01 19 9049103 9049103 A - MUC16 Frame_Shift_Del p.F10843Sfs*11 0.16 TCGA-D5-6927-01 1 103387102 103387102 C A COL11A1 Missense_Mutation p.R1227I 0.24 unknown(0) TCGA-D5-6927-01 1 109241280 109241280 C T PRPF38B Nonsense_Mutation p.R205* 0.06 TCGA-D5-6927-01 1 109479893 109479893 C T CLCC1 Missense_Mutation p.D397N 0.26 tolerated(0.09) possibly_damaging(0.624) TCGA-D5-6927-01 1 109731808 109731808 G T KIAA1324 Missense_Mutation p.G447V 0.30 tolerated(0.13) benign(0.059) TCGA-D5-6927-01 1 109813607 109813607 C A CELSR2 Silent p.S2514S 0.30 TCGA-D5-6927-01 1 11007839 11007839 G A C1orf127 Missense_Mutation p.R785W 0.27 deleterious(0.02) possibly_damaging(0.738) TCGA-D5-6927-01 1 110558059 110558059 G - AHCYL1 Frame_Shift_Del p.G231Efs*3 0.09 TCGA-D5-6927-01 1 11715921 11715921 C A FBXO44 Missense_Mutation p.P10H 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6927-01 1 1178869 1178869 C G FAM132A Missense_Mutation p.A199P 0.24 deleterious(0) probably_damaging(0.989) TCGA-D5-6927-01 1 11842299 11842299 G A C1orf167 Missense_Mutation p.G996S 0.19 deleterious(0.04) probably_damaging(0.931) TCGA-D5-6927-01 1 119575775 119575775 G A WARS2 Missense_Mutation p.A281V 0.27 tolerated(0.14) probably_damaging(0.976) TCGA-D5-6927-01 1 12907656 12907656 T C HNRNPCL1 Missense_Mutation p.K163E 0.08 deleterious(0.01) benign(0.012) TCGA-D5-6927-01 1 150526088 150526088 C T ADAMTSL4 Silent p.N207N 0.27 TCGA-D5-6927-01 1 151158300 151158300 G A VPS72 Missense_Mutation p.R82C 0.20 deleterious(0.02) probably_damaging(0.987) TCGA-D5-6927-01 1 152732678 152732678 C - KPRP Frame_Shift_Del p.Q207Sfs*4 0.08 TCGA-D5-6927-01 1 153909974 153909974 C T DENND4B Missense_Mutation p.R741H 0.24 deleterious(0) probably_damaging(0.994) TCGA-D5-6927-01 1 154131424 154131424 G T NUP210L 5'Flank 0.31 TCGA-D5-6927-01 1 154924336 154924336 A G PBXIP1 Missense_Mutation p.L38P 0.19 tolerated(1) benign(0.001) TCGA-D5-6927-01 1 154965537 154965537 A G FLAD1 3'UTR 0.23 TCGA-D5-6927-01 1 155041387 155041388 - G EFNA4 Intron 0.21 TCGA-D5-6927-01 1 157666960 157666960 T - FCRL3 Frame_Shift_Del p.R272Gfs*3 0.31 TCGA-D5-6927-01 1 160104970 160104970 T C ATP1A2 Missense_Mutation p.L667P 0.06 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 1 160313199 160313199 G - NCSTN Frame_Shift_Del p.G6Vfs*22 0.16 TCGA-D5-6927-01 1 161089360 161089360 A G NIT1 Missense_Mutation p.T139A 0.27 tolerated(0.63) benign(0.012) TCGA-D5-6927-01 1 16464432 16464432 A T EPHA2 Missense_Mutation p.F410I 0.33 deleterious(0) probably_damaging(0.995) TCGA-D5-6927-01 1 166819213 166819213 G T POGK Missense_Mutation p.G466V 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-D5-6927-01 1 169526019 169526019 C T F5 Missense_Mutation p.G273S 0.26 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 1 170135847 170135847 C - METTL11B Frame_Shift_Del p.F181Sfs*16 0.21 TCGA-D5-6927-01 1 171254827 171254827 T C FMO1 3'UTR 0.17 TCGA-D5-6927-01 1 171678829 171678829 C T VAMP4 Silent p.R107R 0.08 TCGA-D5-6927-01 1 172061970 172061970 G A DNM3 Silent p.Q500Q 0.29 TCGA-D5-6927-01 1 17256493 17256493 G A CROCC Silent p.R168R 0.15 TCGA-D5-6927-01 1 173930350 173930350 G A RC3H1 Silent p.P745P 0.28 TCGA-D5-6927-01 1 176564552 176564552 C T PAPPA2 Silent p.L604L 0.20 TCGA-D5-6927-01 1 176926897 176926897 G A ASTN1 Missense_Mutation p.R602C 0.36 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 1 177226508 177226508 G - BRINP2 Frame_Shift_Del p.A221Pfs*53 0.25 TCGA-D5-6927-01 1 177245336 177245337 - T BRINP2 Frame_Shift_Ins p.Q261Sfs*6 0.20 TCGA-D5-6927-01 1 181706676 181706676 C A CACNA1E Nonsense_Mutation p.C1146* 0.23 TCGA-D5-6927-01 1 182827777 182827777 T C DHX9 Splice_Site p.X300_splice 0.08 TCGA-D5-6927-01 1 19181315 19181315 G A TAS1R2 Missense_Mutation p.R217C 0.30 deleterious(0.03) benign(0.377) TCGA-D5-6927-01 1 19519949 19519949 G A UBR4 Missense_Mutation p.A374V 0.25 probably_damaging(0.937) TCGA-D5-6927-01 1 196648907 196648907 G A CFH Silent p.P258P 0.23 TCGA-D5-6927-01 1 200818758 200818758 G A CAMSAP2 Missense_Mutation p.R954H 0.23 tolerated(0.21) benign(0.36) TCGA-D5-6927-01 1 200822482 200822482 C T CAMSAP2 Missense_Mutation p.R1228W 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.21 TCGA-D5-6927-01 1 201330400 201330400 G A TNNT2 Intron 0.22 TCGA-D5-6927-01 1 203317101 203317101 G T FMOD Missense_Mutation p.L100M 0.24 tolerated(0.45) benign(0.114) TCGA-D5-6927-01 1 20471082 20471082 C T PLA2G2F Silent p.H108H 0.23 TCGA-D5-6927-01 1 205031094 205031094 C T CNTN2 Missense_Mutation p.R359C 0.38 deleterious(0) probably_damaging(0.95) TCGA-D5-6927-01 1 205036364 205036364 G A CNTN2 Missense_Mutation p.R704Q 0.19 tolerated(0.15) benign(0.036) TCGA-D5-6927-01 1 205180433 205180433 A G DSTYK Silent p.P77P 0.08 TCGA-D5-6927-01 1 205225527 205225529 AAG - TMCC2 Intron 0.26 TCGA-D5-6927-01 1 207195676 207195676 T C C1orf116 Missense_Mutation p.N478S 0.07 tolerated(0.18) benign(0.098) TCGA-D5-6927-01 1 207297297 207297297 T C C4BPA Silent p.R153R 0.19 TCGA-D5-6927-01 1 207669702 207669702 T C CR1 Silent p.V30V 0.15 TCGA-D5-6927-01 1 211486303 211486303 G T RCOR3 Missense_Mutation p.E439D 0.13 tolerated(0.1) benign(0.024) TCGA-D5-6927-01 1 212911990 212911990 G A NSL1 Silent p.S202S 0.27 TCGA-D5-6927-01 1 21599250 21599250 G T ECE1 Silent p.R145R 0.24 TCGA-D5-6927-01 1 22178680 22178680 G A HSPG2 Silent p.A2257A 0.21 TCGA-D5-6927-01 1 22211641 22211642 - G HSPG2 Frame_Shift_Ins p.Q407Pfs*62 0.19 TCGA-D5-6927-01 1 227076734 227076734 C T PSEN2 Silent p.G257G 0.29 TCGA-D5-6927-01 1 227843487 227843487 T C ZNF678 Silent p.T512T 0.22 TCGA-D5-6927-01 1 228466552 228466552 G A OBSCN Missense_Mutation p.G2770D 0.17 benign(0.166) TCGA-D5-6927-01 1 228681745 228681745 A G RNF187 3'UTR 0.40 TCGA-D5-6927-01 1 230824187 230824187 G T COG2 Missense_Mutation p.S558I 0.20 tolerated(0.17) benign(0.001) TCGA-D5-6927-01 1 231342463 231342463 C T TRIM67 Silent p.N582N 0.19 TCGA-D5-6927-01 1 23966196 23966196 C A MDS2 Missense_Mutation p.A58D 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.826) TCGA-D5-6927-01 1 240492379 240492379 G A FMN2 Missense_Mutation p.A1407T 0.27 probably_damaging(0.995) TCGA-D5-6927-01 1 245021469 245021469 C T HNRNPU Silent p.P446P 0.26 TCGA-D5-6927-01 1 248309016 248309016 C T OR2M5 Silent p.C189C 0.18 TCGA-D5-6927-01 1 26349803 26349803 C T EXTL1 Silent p.P222P 0.29 TCGA-D5-6927-01 1 26369161 26369161 C T SLC30A2 Missense_Mutation p.S204N 0.22 tolerated(0.26) benign(0.046) TCGA-D5-6927-01 1 27688704 27688704 G A MAP3K6 Silent p.C431C 0.26 TCGA-D5-6927-01 1 29064803 29064803 T C YTHDF2 Silent p.L29L 0.07 TCGA-D5-6927-01 1 35260153 35260153 G A GJA4 Silent p.L113L 0.37 TCGA-D5-6927-01 1 35972479 35972480 - T KIAA0319L Frame_Shift_Ins p.F134Ifs*6 0.23 TCGA-D5-6927-01 1 3607510 3607510 T C TP73 Intron 0.19 TCGA-D5-6927-01 1 40033520 40033520 T C PABPC4 Splice_Site p.X293_splice 0.10 TCGA-D5-6927-01 1 40705591 40705591 A - RLF Frame_Shift_Del p.N1741Ifs*21 0.14 TCGA-D5-6927-01 1 45243676 45243676 C A RPS8 Missense_Mutation p.P131H 0.07 deleterious(0.03) possibly_damaging(0.897) TCGA-D5-6927-01 1 45271762 45271762 G A TCTEX1D4 Silent p.D193D 0.29 TCGA-D5-6927-01 1 51323641 51323641 T C FAF1 Missense_Mutation p.E25G 0.21 deleterious(0) probably_damaging(0.96) TCGA-D5-6927-01 1 53974841 53974841 G - GLIS1 Frame_Shift_Del p.L553Cfs*97 0.22 TCGA-D5-6927-01 1 62916519 62916519 A G USP1 Missense_Mutation p.E742G 0.10 tolerated(0.06) possibly_damaging(0.493) TCGA-D5-6927-01 1 63021531 63021531 C T DOCK7 Missense_Mutation p.R854H 0.26 tolerated(0.12) benign(0.071) TCGA-D5-6927-01 1 66091814 66091814 T C LEPR Intron 0.07 TCGA-D5-6927-01 1 6694615 6694615 G A DNAJC11 3'UTR 0.19 TCGA-D5-6927-01 1 67390426 67390426 T - WDR78 Frame_Shift_Del p.K30Rfs*28 0.32 TCGA-D5-6927-01 1 70654895 70654895 C T LRRC40 Silent p.S71S 0.32 TCGA-D5-6927-01 1 75139252 75139252 C T C1orf173 5'UTR 0.18 TCGA-D5-6927-01 1 78099027 78099027 G A ZZZ3 Nonsense_Mutation p.R5* 0.24 TCGA-D5-6927-01 1 84991665 84991665 T C SPATA1 RNA 0.05 TCGA-D5-6927-01 1 8926394 8926394 G A ENO1 Missense_Mutation p.A204V 0.22 deleterious_low_confidence(0) possibly_damaging(0.661) TCGA-D5-6927-01 1 9078420 9078420 C T SLC2A7 Missense_Mutation p.A151T 0.23 tolerated(0.12) benign(0.166) TCGA-D5-6927-01 1 91405532 91405532 C T ZNF644 Missense_Mutation p.R460H 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-D5-6927-01 1 97278445 97278445 T - PTBP2 Frame_Shift_Del p.P452Lfs*15 0.19 TCGA-D5-6927-01 20 10273813 10273813 A G SNAP25 Silent p.Q56Q 0.09 TCGA-D5-6927-01 20 10633188 10633188 C T JAG1 Missense_Mutation p.V272I 0.21 tolerated(0.08) probably_damaging(0.968) TCGA-D5-6927-01 20 29891124 29891124 C A DEFB116 Missense_Mutation p.C67F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6927-01 20 31238601 31238601 C T C20orf203 RNA 0.29 TCGA-D5-6927-01 20 33147013 33147013 C T MAP1LC3A Silent p.A18A 0.09 TCGA-D5-6927-01 20 33298155 33298155 C A TP53INP2 3'UTR 0.17 TCGA-D5-6927-01 20 33725703 33725703 G A EDEM2 Missense_Mutation p.A157V 0.34 tolerated(0.92) benign(0.028) TCGA-D5-6927-01 20 33875145 33875145 C T FAM83C Silent p.L479L 0.35 TCGA-D5-6927-01 20 35060775 35060775 C T DLGAP4 Missense_Mutation p.R219C 0.29 deleterious(0.04) benign(0.004) TCGA-D5-6927-01 20 35219550 35219550 G A TGIF2 Missense_Mutation p.A144T 0.24 tolerated(0.45) benign(0.104) TCGA-D5-6927-01 20 35521429 35521429 T - SAMHD1 Frame_Shift_Del p.K596Rfs*35 0.21 TCGA-D5-6927-01 20 3683949 3683949 G T SIGLEC1 Missense_Mutation p.L375I 0.08 deleterious(0.01) probably_damaging(0.96) TCGA-D5-6927-01 20 4228641 4228641 G A ADRA1D Missense_Mutation p.R322C 0.30 deleterious(0.03) benign(0.026) TCGA-D5-6927-01 20 42683074 42683074 G A TOX2 Missense_Mutation p.A263T 0.23 deleterious(0) probably_damaging(0.994) TCGA-D5-6927-01 20 43058338 43058338 C - HNF4A 3'UTR 0.15 TCGA-D5-6927-01 20 43945359 43945359 C T RBPJL Silent p.D438D 0.26 TCGA-D5-6927-01 20 46277813 46277813 C T NCOA3 Missense_Mutation p.A1204V 0.23 tolerated(0.2) benign(0.102) TCGA-D5-6927-01 20 52788121 52788121 T C CYP24A1 Missense_Mutation p.N180D 0.32 tolerated(0.1) possibly_damaging(0.883) TCGA-D5-6927-01 20 60581614 60581614 C T TAF4 Silent p.T725T 0.12 TCGA-D5-6927-01 20 60926803 60926803 G T LAMA5 Missense_Mutation p.H305N 0.21 probably_damaging(0.996) TCGA-D5-6927-01 20 61598071 61598071 C T SLC17A9 Silent p.A378A 0.28 TCGA-D5-6927-01 20 62187150 62187150 G A C20orf195 Missense_Mutation p.R45H 0.37 deleterious(0) probably_damaging(0.978) TCGA-D5-6927-01 20 62193904 62193904 C T HELZ2 Missense_Mutation p.V2091I 0.25 tolerated(0.3) benign(0.024) TCGA-D5-6927-01 20 62328715 62328715 C - TNFRSF6B Frame_Shift_Del p.P155Qfs*101 0.19 TCGA-D5-6927-01 20 7864203 7864203 A - HAO1 3'UTR 0.19 TCGA-D5-6927-01 21 16338973 16338973 T C NRIP1 Missense_Mutation p.E514G 0.06 tolerated(0.41) benign(0.002) TCGA-D5-6927-01 21 22910328 22910328 C T NCAM2 3'UTR 0.28 TCGA-D5-6927-01 21 26966212 26966212 G T MRPL39 Missense_Mutation p.L254I 0.11 deleterious(0) possibly_damaging(0.883) TCGA-D5-6927-01 21 30402966 30402966 A G USP16 Missense_Mutation p.K38E 0.08 deleterious(0) benign(0.123) TCGA-D5-6927-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.23 TCGA-D5-6927-01 21 39672750 39672750 A - KCNJ15 3'UTR 0.18 TCGA-D5-6927-01 21 40559109 40559110 - G BRWD1 Frame_Shift_Ins p.H2269Pfs*9 0.22 TCGA-D5-6927-01 21 41719644 41719644 C T DSCAM Missense_Mutation p.R388H 0.25 tolerated(0.09) benign(0.42) TCGA-D5-6927-01 21 43829573 43829573 C - UBASH3A Frame_Shift_Del p.Q72Rfs*40 0.24 TCGA-D5-6927-01 21 44119083 44119083 C T PDE9A Missense_Mutation p.P75L 0.25 tolerated(0.83) benign(0.082) TCGA-D5-6927-01 21 45535791 45535791 C T PWP2 Missense_Mutation p.R276W 0.26 deleterious(0.02) possibly_damaging(0.696) TCGA-D5-6927-01 21 45676007 45676007 G A DNMT3L Missense_Mutation p.P183S 0.09 tolerated(0.15) benign(0.382) TCGA-D5-6927-01 21 47700459 47700460 - C MCM3AP Frame_Shift_Ins p.K492Efs*5 0.23 TCGA-D5-6927-01 21 47810705 47810705 G A PCNT Missense_Mutation p.A1321T 0.29 benign(0) TCGA-D5-6927-01 21 47831419 47831419 G A PCNT Missense_Mutation p.R1811H 0.24 benign(0) TCGA-D5-6927-01 22 17073044 17073044 G A CCT8L2 Missense_Mutation p.R133W 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-D5-6927-01 22 19226836 19226837 - A CLTCL1 Frame_Shift_Ins p.P253Sfs*7 0.10 TCGA-D5-6927-01 22 20229141 20229141 C T RTN4R 3'UTR 0.23 TCGA-D5-6927-01 22 20760535 20760535 C T ZNF74 Silent p.T404T 0.36 TCGA-D5-6927-01 22 20939224 20939224 T C MED15 Missense_Mutation p.I629T 0.29 deleterious(0) probably_damaging(0.962) TCGA-D5-6927-01 22 28389469 28389469 C T TTC28 Missense_Mutation p.R1761H 0.28 tolerated(0.31) benign(0.002) TCGA-D5-6927-01 22 29654817 29654817 G A EMID1 Missense_Mutation p.G406R 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 22 29656758 29656758 G A RHBDD3 Missense_Mutation p.P210S 0.27 tolerated(0.33) probably_damaging(0.941) TCGA-D5-6927-01 22 29704406 29704406 C T GAS2L1 Missense_Mutation p.A104V 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6927-01 22 30639555 30639555 G T LIF 3'UTR 0.20 TCGA-D5-6927-01 22 31328957 31328957 G A MORC2 Missense_Mutation p.A752V 0.20 deleterious_low_confidence(0) possibly_damaging(0.687) TCGA-D5-6927-01 22 32215095 32215095 A G DEPDC5 Missense_Mutation p.H585R 0.22 tolerated(0.1) benign(0.263) TCGA-D5-6927-01 22 32810187 32810187 A G BPIFC 3'UTR 0.08 TCGA-D5-6927-01 22 33733766 33733767 - G LARGE Frame_Shift_Ins p.K385Qfs*24 0.21 TCGA-D5-6927-01 22 35812809 35812809 T C MCM5 Splice_Site p.X530_splice 0.18 TCGA-D5-6927-01 22 37769396 37769396 G A ELFN2 Missense_Mutation p.R727C 0.26 deleterious(0) probably_damaging(0.932) TCGA-D5-6927-01 22 37771709 37771709 G T ELFN2 5'UTR 0.35 TCGA-D5-6927-01 22 38202351 38202351 A G H1F0 3'UTR 0.28 TCGA-D5-6927-01 22 38617527 38617527 G A TMEM184B Silent p.G391G 0.23 TCGA-D5-6927-01 22 41980319 41980319 T C PMM1 Missense_Mutation p.S114G 0.34 tolerated(0.25) benign(0.003) TCGA-D5-6927-01 22 42537675 42537675 C T NDUFA6-AS1 3'Flank 0.08 TCGA-D5-6927-01 22 43870687 43870687 G A MPPED1 Missense_Mutation p.A160T 0.22 tolerated(0.25) benign(0.011) TCGA-D5-6927-01 22 46752955 46752955 G A TRMU 3'UTR 0.25 TCGA-D5-6927-01 22 50217510 50217510 G A BRD1 Silent p.N152N 0.26 TCGA-D5-6927-01 22 50316907 50316907 G A CRELD2 Silent p.P287P 0.34 TCGA-D5-6927-01 22 50898756 50898756 G - SBF1 Frame_Shift_Del p.S1077Afs*28 0.29 TCGA-D5-6927-01 22 50921000 50921000 C T ADM2 Missense_Mutation p.P39S 0.13 tolerated(0.27) benign(0.007) TCGA-D5-6927-01 22 51043492 51043492 A G MAPK8IP2 Missense_Mutation p.S588G 0.26 tolerated(0.05) benign(0.015) TCGA-D5-6927-01 2 100906808 100906808 G A LONRF2 Missense_Mutation p.A611V 0.38 deleterious(0) probably_damaging(0.994) TCGA-D5-6927-01 2 112944902 112944902 G A FBLN7 Missense_Mutation p.S380N 0.20 tolerated(0.16) benign(0.016) TCGA-D5-6927-01 2 113305100 113305100 A T POLR1B Missense_Mutation p.N150Y 0.08 deleterious(0) benign(0.264) TCGA-D5-6927-01 2 114340662 114340662 A G MIR1302-3 RNA 0.14 TCGA-D5-6927-01 2 116534869 116534869 A - DPP10 Frame_Shift_Del p.I442Ffs*4 0.19 TCGA-D5-6927-01 2 127944880 127944880 C - CYP27C1 Frame_Shift_Del p.I364Sfs*14 0.22 TCGA-D5-6927-01 2 132285711 132285711 C T CCDC74A Silent p.S56S 0.20 TCGA-D5-6927-01 2 136023119 136023119 T G ZRANB3 Missense_Mutation p.E508D 0.09 tolerated(0.36) benign(0.02) TCGA-D5-6927-01 2 136561623 136561623 G A LCT Missense_Mutation p.R1514W 0.25 tolerated(0.1) benign(0.035) TCGA-D5-6927-01 2 136872415 136872415 A - CXCR4 3'UTR 0.38 TCGA-D5-6927-01 2 141253212 141253212 A G LRP1B Missense_Mutation p.Y2986H 0.29 benign(0.403) TCGA-D5-6927-01 2 144765023 144765023 C T GTDC1 Missense_Mutation p.A201T 0.28 tolerated_low_confidence(0.3) benign(0.004) TCGA-D5-6927-01 2 155252597 155252597 C T GALNT13 Silent p.I417I 0.16 TCGA-D5-6927-01 2 160901507 160901507 C A PLA2R1 Missense_Mutation p.G91C 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 2 164467843 164467843 T C FIGN Missense_Mutation p.T167A 0.08 tolerated(0.21) benign(0.002) TCGA-D5-6927-01 2 165796053 165796053 G A SLC38A11 Silent p.N92N 0.07 TCGA-D5-6927-01 2 1668734 1668735 - T PXDN Frame_Shift_Ins p.G470Rfs*19 0.12 TCGA-D5-6927-01 2 171243624 171243624 T A MYO3B Missense_Mutation p.N461K 0.20 deleterious(0) possibly_damaging(0.714) TCGA-D5-6927-01 2 174777861 174777861 T C SP3 Missense_Mutation p.M656V 0.10 tolerated(0.25) benign(0) TCGA-D5-6927-01 2 177054725 177054725 G T HOXD1 Missense_Mutation p.R281M 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 2 178937182 178937182 C A PDE11A 5'UTR 0.24 TCGA-D5-6927-01 2 179429930 179429930 C T TTN Missense_Mutation p.V26977I 0.15 TCGA-D5-6927-01 2 179455963 179455963 G A TTN Silent p.A20163A 0.22 TCGA-D5-6927-01 2 17952549 17952549 A G GEN1 Missense_Mutation p.H266R 0.10 deleterious(0) possibly_damaging(0.788) TCGA-D5-6927-01 2 179616192 179616192 T - TTN Intron 0.67 TCGA-D5-6927-01 2 179989226 179989226 G A SESTD1 Silent p.G344G 0.28 TCGA-D5-6927-01 2 190926983 190926983 T C MSTN Missense_Mutation p.T114A 0.19 tolerated(0.06) benign(0.027) TCGA-D5-6927-01 2 201437193 201437193 T C SGOL2 Silent p.V708V 0.12 TCGA-D5-6927-01 2 201756681 201756681 C T NIF3L1 Silent p.C5C 0.29 TCGA-D5-6927-01 2 202589135 202589135 C T ALS2 Missense_Mutation p.R1132H 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 2 203397438 203397438 G A BMPR2 Missense_Mutation p.C420Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.23 TCGA-D5-6927-01 2 21247803 21247803 A G APOB Splice_Site p.X812_splice 0.35 TCGA-D5-6927-01 2 219538431 219538431 G T STK36 Silent p.R56R 0.22 TCGA-D5-6927-01 2 220079111 220079111 C T ABCB6 Silent p.T462T 0.24 TCGA-D5-6927-01 2 226446837 226446837 C T NYAP2 Missense_Mutation p.A235V 0.32 tolerated(0.07) benign(0.063) TCGA-D5-6927-01 2 228137824 228137824 G A COL4A3 Missense_Mutation p.G640R 0.13 unknown(0) TCGA-D5-6927-01 2 233393217 233393217 C T CHRND Silent p.D120D 0.26 TCGA-D5-6927-01 2 234465661 234465661 A G USP40 Missense_Mutation p.M141T 0.26 tolerated(0.52) benign(0.037) TCGA-D5-6927-01 2 234627926 234627926 G A UGT1A4 Missense_Mutation p.V154I 0.28 tolerated(0.18) benign(0.016) TCGA-D5-6927-01 2 237489982 237489982 G A ACKR3 Missense_Mutation p.A292T 0.28 tolerated(0.13) benign(0.18) TCGA-D5-6927-01 2 239025638 239025638 G A ESPNL Missense_Mutation p.R317Q 0.25 tolerated(1) benign(0.025) TCGA-D5-6927-01 2 241622006 241622006 G A AQP12B Silent p.H83H 0.23 TCGA-D5-6927-01 2 242662424 242662424 G A ING5 Missense_Mutation p.E185K 0.21 deleterious(0) possibly_damaging(0.54) TCGA-D5-6927-01 2 26690266 26690266 G A OTOF Silent p.P1398P 0.27 TCGA-D5-6927-01 2 27600998 27600998 C - ZNF513 Frame_Shift_Del p.G347Vfs*33 0.29 TCGA-D5-6927-01 2 29045258 29045258 T C SPDYA Missense_Mutation p.I121T 0.06 tolerated(0.36) benign(0.009) TCGA-D5-6927-01 2 32689838 32689838 C - BIRC6 Frame_Shift_Del p.P1736Qfs*17 0.29 TCGA-D5-6927-01 2 43451357 43451357 C - ZFP36L2 3'UTR 0.43 TCGA-D5-6927-01 2 47739508 47739508 G - KCNK12 3'Flank 0.24 TCGA-D5-6927-01 2 54159871 54159871 T - PSME4 Frame_Shift_Del p.K328Nfs*3 0.18 TCGA-D5-6927-01 2 5836478 5836478 G T SOX11 3'UTR 0.28 TCGA-D5-6927-01 2 58381935 58381935 A G VRK2 Intron 0.27 TCGA-D5-6927-01 2 71365627 71365627 A - MPHOSPH10 Frame_Shift_Del p.I371Lfs*4 0.21 TCGA-D5-6927-01 2 72725595 72725595 G A EXOC6B Missense_Mutation p.A442V 0.11 tolerated(0.77) benign(0.022) TCGA-D5-6927-01 2 73676839 73676839 A G ALMS1 Missense_Mutation p.Q1061R 0.08 possibly_damaging(0.876) TCGA-D5-6927-01 2 74042414 74042414 A - C2orf78 Frame_Shift_Del p.N357Mfs*17 0.19 TCGA-D5-6927-01 2 90199057 90199057 C T IGKV1D-12 Missense_Mutation p.A73V 0.42 deleterious(0.03) benign(0.13) TCGA-D5-6927-01 2 96993254 96993255 - T ITPRIPL1 Frame_Shift_Ins p.L304Ffs*5 0.24 TCGA-D5-6927-01 2 99953861 99953861 G A EIF5B 5'UTR 0.41 TCGA-D5-6927-01 3 100498981 100498981 T - ABI3BP Frame_Shift_Del p.K701Sfs*41 0.10 TCGA-D5-6927-01 3 100963381 100963381 G A IMPG2 Silent p.D598D 0.28 TCGA-D5-6927-01 3 108248132 108248132 G A MYH15 5'UTR 0.34 TCGA-D5-6927-01 3 112357834 112357834 C A CCDC80 Missense_Mutation p.G307C 0.23 deleterious(0.01) benign(0.21) TCGA-D5-6927-01 3 120352008 120352008 C T HGD Missense_Mutation p.A392T 0.23 tolerated(0.19) probably_damaging(0.935) TCGA-D5-6927-01 3 121414854 121414854 T - GOLGB1 Frame_Shift_Del p.S1506Vfs*38 0.14 TCGA-D5-6927-01 3 121416780 121416780 T C GOLGB1 Missense_Mutation p.S864G 0.05 benign(0.001) TCGA-D5-6927-01 3 122628815 122628815 C - SEMA5B 3'UTR 0.38 TCGA-D5-6927-01 3 123457864 123457864 C T MYLK Nonsense_Mutation p.W156* 0.28 TCGA-D5-6927-01 3 125876303 125876303 C T ALDH1L1 Silent p.A147A 0.36 TCGA-D5-6927-01 3 126723518 126723518 G A PLXNA1 Missense_Mutation p.R528Q 0.25 tolerated(0.32) benign(0.323) TCGA-D5-6927-01 3 126746929 126746929 G T PLXNA1 Silent p.L1503L 0.08 TCGA-D5-6927-01 3 128202793 128202793 G A GATA2 Silent p.D309D 0.13 TCGA-D5-6927-01 3 129284279 129284279 G A PLXND1 Silent p.A1475A 0.20 TCGA-D5-6927-01 3 130116769 130116769 T C COL6A5 Splice_Site p.X1303_splice 0.20 TCGA-D5-6927-01 3 131624207 131624207 C T CPNE4 Silent p.E27E 0.14 TCGA-D5-6927-01 3 133673830 133673830 C T SLCO2A1 Missense_Mutation p.S202N 0.10 tolerated(1) benign(0.001) TCGA-D5-6927-01 3 142396957 142396957 T C PLS1 Splice_Site p.X193_splice 0.22 TCGA-D5-6927-01 3 14549115 14549115 C A GRIP2 RNA 0.10 TCGA-D5-6927-01 3 148460672 148460672 A - AGTR1 3'UTR 0.27 TCGA-D5-6927-01 3 15480727 15480727 G A EAF1 3'UTR 0.20 TCGA-D5-6927-01 3 156876656 156876656 T - CCNL1 Frame_Shift_Del p.R163Gfs*6 0.26 TCGA-D5-6927-01 3 15737709 15737709 G A ANKRD28 Missense_Mutation p.R501C 0.19 deleterious(0.01) benign(0.209) TCGA-D5-6927-01 3 158362400 158362400 T A GFM1 5'UTR 0.13 TCGA-D5-6927-01 3 16419294 16419294 C A RFTN1 Missense_Mutation p.G253W 0.28 deleterious(0.02) benign(0.009) TCGA-D5-6927-01 3 165547687 165547687 G A BCHE Nonsense_Mutation p.Q379* 0.27 TCGA-D5-6927-01 3 168834343 168834343 A - MECOM Frame_Shift_Del p.F316Lfs*21 0.21 TCGA-D5-6927-01 3 171392294 171392294 A G PLD1 Missense_Mutation p.V742A 0.09 deleterious(0.03) benign(0.003) TCGA-D5-6927-01 3 176752053 176752053 A G TBL1XR1 Missense_Mutation p.Y395H 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-D5-6927-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-D5-6927-01 3 183508631 183508631 C T YEATS2 Missense_Mutation p.T987M 0.28 tolerated_low_confidence(0.75) benign(0.001) TCGA-D5-6927-01 3 184041989 184041989 C T EIF4G1 Silent p.L832L 0.34 TCGA-D5-6927-01 3 194408902 194408902 G A FAM43A 3'UTR 0.19 TCGA-D5-6927-01 3 195498665 195498665 A G MUC4 Missense_Mutation p.I4367T 0.17 benign(0.063) TCGA-D5-6927-01 3 196674360 196674360 G - PIGZ Frame_Shift_Del p.R470Gfs*30 0.30 TCGA-D5-6927-01 3 27477999 27477999 G T SLC4A7 Silent p.R148R 0.24 TCGA-D5-6927-01 3 32933116 32933116 G A TRIM71 Missense_Mutation p.R807H 0.16 tolerated(0.62) benign(0.051) TCGA-D5-6927-01 3 35763108 35763108 A G ARPP21 Missense_Mutation p.D302G 0.25 deleterious(0) possibly_damaging(0.499) TCGA-D5-6927-01 3 37033626 37033626 G A EPM2AIP1 Nonsense_Mutation p.R315* 0.24 TCGA-D5-6927-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.58 deleterious(0) possibly_damaging(0.844) TCGA-D5-6927-01 3 44986781 44986781 C - ZDHHC3 Frame_Shift_Del p.A104Qfs*17 0.17 TCGA-D5-6927-01 3 48461315 48461315 G A PLXNB1 Missense_Mutation p.P794S 0.30 tolerated(0.43) probably_damaging(0.998) TCGA-D5-6927-01 3 48474299 48474299 G A CCDC51 Missense_Mutation p.A252V 0.26 tolerated(0.09) possibly_damaging(0.906) TCGA-D5-6927-01 3 48501288 48501288 C - ATRIP Frame_Shift_Del p.L345Cfs*31 0.23 TCGA-D5-6927-01 3 48694631 48694631 G A CELSR3 Missense_Mutation p.A1300V 0.26 deleterious(0) possibly_damaging(0.887) TCGA-D5-6927-01 3 49094990 49094990 T C QRICH1 Missense_Mutation p.T215A 0.08 deleterious(0.01) benign(0.275) TCGA-D5-6927-01 3 49200350 49200350 A G CCDC71 Missense_Mutation p.V431A 0.09 deleterious(0) unknown(0) TCGA-D5-6927-01 3 49201271 49201271 C T CCDC71 Missense_Mutation p.R124K 0.20 tolerated(0.09) probably_damaging(0.991) TCGA-D5-6927-01 3 49690128 49690128 C T BSN Missense_Mutation p.R1047W 0.30 unknown(0) TCGA-D5-6927-01 3 49770391 49770392 TT - IP6K1 Frame_Shift_Del p.K150Efs*26 0.23 TCGA-D5-6927-01 3 50212555 50212555 G T SEMA3F Silent p.A161A 0.08 TCGA-D5-6927-01 3 50602915 50602915 T C C3orf18 Missense_Mutation p.I72M 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-D5-6927-01 3 52469716 52469716 C A SEMA3G Missense_Mutation p.R751M 0.24 tolerated(0.12) benign(0.007) TCGA-D5-6927-01 3 52551362 52551362 G - STAB1 Frame_Shift_Del p.G1507Afs*84 0.25 TCGA-D5-6927-01 3 65425576 65425576 C T MAGI1 Silent p.Q416Q 0.34 TCGA-D5-6927-01 3 73047244 73047244 G A PPP4R2 Silent p.G17G 0.24 TCGA-D5-6927-01 3 73433851 73433851 G A PDZRN3 Silent p.N622N 0.32 TCGA-D5-6927-01 3 98251809 98251809 G T GPR15 Missense_Mutation p.R311L 0.14 deleterious(0) possibly_damaging(0.569) TCGA-D5-6927-01 4 100805271 100805271 A G LAMTOR3 Silent p.F83F 0.28 TCGA-D5-6927-01 4 100870509 100870509 G T H2AFZ Missense_Mutation p.S39Y 0.25 deleterious(0) possibly_damaging(0.541) TCGA-D5-6927-01 4 103964580 103964580 G A SLC9B2 Missense_Mutation p.T340I 0.35 tolerated(0.09) benign(0.015) TCGA-D5-6927-01 4 106197505 106197506 - A TET2 Frame_Shift_Ins p.V1949Sfs*7 0.24 TCGA-D5-6927-01 4 113181980 113181980 G A AP1AR Missense_Mutation p.E82K 0.27 tolerated(0.19) possibly_damaging(0.616) TCGA-D5-6927-01 4 114302724 114302724 C T ANK2 3'UTR 0.36 TCGA-D5-6927-01 4 115544476 115544476 T C UGT8 Missense_Mutation p.I147T 0.21 deleterious(0) possibly_damaging(0.902) TCGA-D5-6927-01 4 118005286 118005286 C A TRAM1L1 3'UTR 0.32 TCGA-D5-6927-01 4 119161837 119161837 C - NDST3 Frame_Shift_Del p.P761Hfs*5 0.22 TCGA-D5-6927-01 4 119948244 119948244 C T SYNPO2 Silent p.H240H 0.11 TCGA-D5-6927-01 4 13485808 13485808 G - RAB28 5'UTR 0.45 TCGA-D5-6927-01 4 135122324 135122324 C - PABPC4L Frame_Shift_Del p.E9Sfs*4 0.21 TCGA-D5-6927-01 4 145985784 145985784 A G ANAPC10 Silent p.Y89Y 0.29 TCGA-D5-6927-01 4 153247289 153247289 G A FBXW7 Missense_Mutation p.R505C 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 4 156137318 156137318 A - NPY2R 3'UTR 0.22 TCGA-D5-6927-01 4 158142161 158142161 G - GRIA2 5'UTR 0.14 TCGA-D5-6927-01 4 164393912 164393913 AT - TKTL2 Frame_Shift_Del p.Y325Wfs*6 0.10 TCGA-D5-6927-01 4 165890706 165890706 G T TRIM61 Missense_Mutation p.P150Q 0.14 deleterious(0.04) possibly_damaging(0.723) TCGA-D5-6927-01 4 170037692 170037692 G A SH3RF1 Silent p.L623L 0.31 TCGA-D5-6927-01 4 17493917 17493917 G A QDPR Silent p.C161C 0.20 TCGA-D5-6927-01 4 175897871 175897871 C T ADAM29 Missense_Mutation p.R399C 0.27 deleterious(0.02) benign(0.192) TCGA-D5-6927-01 4 17654471 17654471 G A FAM184B Nonsense_Mutation p.Q725* 0.15 TCGA-D5-6927-01 4 178359990 178359990 A G AGA Missense_Mutation p.M139T 0.22 deleterious(0.02) possibly_damaging(0.854) TCGA-D5-6927-01 4 183721012 183721012 C T TENM3 Silent p.N2536N 0.26 TCGA-D5-6927-01 4 185684394 185684394 G A ACSL1 Missense_Mutation p.P483L 0.26 deleterious(0) probably_damaging(0.96) TCGA-D5-6927-01 4 185724625 185724625 A G ACSL1 Missense_Mutation p.L15P 0.23 deleterious(0) possibly_damaging(0.806) TCGA-D5-6927-01 4 187158018 187158019 - A KLKB1 Frame_Shift_Ins p.R140Kfs*5 0.17 TCGA-D5-6927-01 4 187201426 187201426 A C F11 Missense_Mutation p.E305D 0.24 tolerated(0.08) possibly_damaging(0.865) TCGA-D5-6927-01 4 189018490 189018490 T C TRIML2 Missense_Mutation p.Y161C 0.11 tolerated(0.18) benign(0.003) TCGA-D5-6927-01 4 25162106 25162110 AAAAC - SEPSECS 5'Flank 0.31 TCGA-D5-6927-01 4 2674062 2674062 C A FAM193A Missense_Mutation p.P474H 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D5-6927-01 4 2831651 2831652 - C SH3BP2 Frame_Shift_Ins p.R399Pfs*7 0.21 TCGA-D5-6927-01 4 3318228 3318228 G - RGS12 Frame_Shift_Del p.G112Dfs*9 0.25 TCGA-D5-6927-01 4 39456557 39456557 A C RPL9 Silent p.A133A 0.28 TCGA-D5-6927-01 4 44688034 44688035 - C GUF1 Frame_Shift_Ins p.P246Sfs*2 0.16 TCGA-D5-6927-01 4 48091698 48091698 C T TXK Intron 0.35 TCGA-D5-6927-01 4 55564717 55564717 T C KIT Missense_Mutation p.L202P 0.24 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 4 65145813 65145813 C T TECRL Missense_Mutation p.A357T 0.07 deleterious(0.03) probably_damaging(0.993) TCGA-D5-6927-01 4 68928915 68928915 C A TMPRSS11F Intron 0.23 TCGA-D5-6927-01 4 69056923 69056923 T A TMPRSS11BNL 3'UTR 0.28 TCGA-D5-6927-01 4 70599153 70599153 A - SULT1B1 Frame_Shift_Del p.L192Cfs*6 0.17 TCGA-D5-6927-01 4 73414490 73414490 G A ADAMTS3 Missense_Mutation p.A70V 0.29 tolerated(0.37) benign(0.033) TCGA-D5-6927-01 4 759937 759937 A G PCGF3 3'UTR 0.35 TCGA-D5-6927-01 4 76925961 76925961 C A CXCL9 Splice_Site p.X92_splice 0.11 TCGA-D5-6927-01 4 80247171 80247171 C T NAA11 5'UTR 0.29 TCGA-D5-6927-01 4 83347246 83347246 C - HNRNPDL Frame_Shift_Del p.G410Vfs*25 0.14 TCGA-D5-6927-01 4 83857172 83857172 G A LIN54 Nonsense_Mutation p.R603* 0.26 TCGA-D5-6927-01 4 8582998 8582998 G A GPR78 Missense_Mutation p.V97M 0.34 tolerated(1) benign(0.144) TCGA-D5-6927-01 4 8602795 8602795 C T CPZ Intron 0.26 TCGA-D5-6927-01 4 9785349 9785349 G C DRD5 3'UTR 0.11 TCGA-D5-6927-01 5 112228080 112228080 G A ZRSR1 Silent p.V248V 0.09 TCGA-D5-6927-01 5 112420925 112420925 G A MCC Missense_Mutation p.P494L 0.25 tolerated(0.16) probably_damaging(0.996) TCGA-D5-6927-01 5 118433745 118433745 T G DMXL1 Silent p.A53A 0.33 TCGA-D5-6927-01 5 1243867 1243867 C A SLC6A18 Silent p.A443A 0.31 TCGA-D5-6927-01 5 125891653 125891653 C T ALDH7A1 Missense_Mutation p.A355T 0.18 tolerated(0.29) benign(0.006) TCGA-D5-6927-01 5 129520225 129520225 A T CHSY3 Missense_Mutation p.I464L 0.27 tolerated(0.9) benign(0.003) TCGA-D5-6927-01 5 131007363 131007364 - T FNIP1 Frame_Shift_Ins p.I925Nfs*6 0.19 TCGA-D5-6927-01 5 131014845 131014845 G A FNIP1 Missense_Mutation p.T409M 0.27 tolerated(0.16) probably_damaging(0.999) TCGA-D5-6927-01 5 131046305 131046305 C T FNIP1 Silent p.P224P 0.25 TCGA-D5-6927-01 5 131820142 131820142 C - IRF1 Frame_Shift_Del p.Y256Tfs*34 0.24 TCGA-D5-6927-01 5 135587417 135587417 T C TRPC7 Missense_Mutation p.Q500R 0.22 tolerated(0.07) benign(0.213) TCGA-D5-6927-01 5 137495848 137495848 C T BRD8 Silent p.T814T 0.32 TCGA-D5-6927-01 5 137521264 137521264 G A KIF20A Missense_Mutation p.A664T 0.31 tolerated(0.45) benign(0.004) TCGA-D5-6927-01 5 138717621 138717621 C T SLC23A1 Missense_Mutation p.V90M 0.27 deleterious(0.01) benign(0.404) TCGA-D5-6927-01 5 139943823 139943823 C T APBB3 Missense_Mutation p.G3D 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 5 140167812 140167812 G A PCDHA1 Missense_Mutation p.R646H 0.10 deleterious_low_confidence(0.04) benign(0.209) TCGA-D5-6927-01 5 140794968 140794968 G A PCDHGA10 Silent p.S742S 0.08 TCGA-D5-6927-01 5 140799268 140799268 C T PCDHGB7 Silent p.P614P 0.33 TCGA-D5-6927-01 5 141005843 141005843 C T HDAC3 Missense_Mutation p.V280I 0.31 deleterious(0.04) possibly_damaging(0.866) TCGA-D5-6927-01 5 145858127 145858127 G A TCERG1 Missense_Mutation p.R558Q 0.22 deleterious(0) unknown(0) TCGA-D5-6927-01 5 146070693 146070693 G A PPP2R2B Missense_Mutation p.R152W 0.23 deleterious(0) possibly_damaging(0.74) TCGA-D5-6927-01 5 14711209 14711209 A - ANKH 3'UTR 0.41 TCGA-D5-6927-01 5 149323858 149323858 T C PDE6A Missense_Mutation p.M127V 0.39 tolerated(0.54) benign(0.001) TCGA-D5-6927-01 5 149629821 149629821 G A CAMK2A Silent p.L290L 0.29 TCGA-D5-6927-01 5 156734850 156734850 A G CYFIP2 Missense_Mutation p.S267G 0.18 tolerated(0.22) benign(0.003) TCGA-D5-6927-01 5 156747709 156747709 C T CYFIP2 Nonsense_Mutation p.R498* 0.25 TCGA-D5-6927-01 5 15937134 15937134 G A FBXL7 Missense_Mutation p.E439K 0.31 deleterious(0.05) possibly_damaging(0.833) TCGA-D5-6927-01 5 163045 163045 G A PLEKHG4B Missense_Mutation p.R597H 0.20 tolerated(0.7) benign(0) TCGA-D5-6927-01 5 169507167 169507167 C T DOCK2 Missense_Mutation p.L1723F 0.36 tolerated_low_confidence(0.1) possibly_damaging(0.548) TCGA-D5-6927-01 5 175740461 175740461 A - SIMC1 Intron 0.22 TCGA-D5-6927-01 5 176011614 176011614 G A CDHR2 Missense_Mutation p.V778M 0.07 deleterious(0.01) possibly_damaging(0.881) TCGA-D5-6927-01 5 176863139 176863139 C A GRK6 Missense_Mutation p.L375M 0.22 deleterious(0.01) possibly_damaging(0.862) TCGA-D5-6927-01 5 176867926 176867926 G A GRK6 Missense_Mutation p.E517K 0.26 deleterious(0) possibly_damaging(0.472) TCGA-D5-6927-01 5 176882786 176882786 G A PRR7 Silent p.P163P 0.21 TCGA-D5-6927-01 5 177569978 177569978 C T RMND5B Silent p.A137A 0.37 TCGA-D5-6927-01 5 178579179 178579179 C T ADAMTS2 Silent p.G531G 0.30 TCGA-D5-6927-01 5 206075 206075 T C CCDC127 Splice_Site p.X41_splice 0.27 TCGA-D5-6927-01 5 39341301 39341301 G - C9 Frame_Shift_Del p.C142Afs*6 0.21 TCGA-D5-6927-01 5 39377127 39377129 TTG - DAB2 In_Frame_Del p.T587del 0.24 TCGA-D5-6927-01 5 40765005 40765005 C T PRKAA1 Missense_Mutation p.R401H 0.25 tolerated(0.08) probably_damaging(0.961) TCGA-D5-6927-01 5 42689023 42689023 C T GHR Silent p.C56C 0.23 TCGA-D5-6927-01 5 6746401 6746401 T C PAPD7 Silent p.Y190Y 0.25 TCGA-D5-6927-01 5 68411996 68411996 G A SLC30A5 Missense_Mutation p.V343I 0.11 tolerated(0.09) possibly_damaging(0.732) TCGA-D5-6927-01 5 69718740 69718740 C T GTF2H2B RNA 0.16 TCGA-D5-6927-01 5 72850781 72850781 G A ANKRA2 Nonsense_Mutation p.R215* 0.20 TCGA-D5-6927-01 5 76332475 76332475 A C AGGF1 Missense_Mutation p.Q204P 0.10 deleterious(0) probably_damaging(0.997) TCGA-D5-6927-01 5 78734967 78734967 G A HOMER1 Silent p.S131S 0.13 TCGA-D5-6927-01 5 81548405 81548405 T - ATG10 Frame_Shift_Del p.F161Lfs*12 0.21 TCGA-D5-6927-01 5 82875801 82875801 G A VCAN Missense_Mutation p.A3295T 0.23 deleterious(0) possibly_damaging(0.894) TCGA-D5-6927-01 5 86658427 86658427 T C RASA1 Silent p.R464R 0.06 TCGA-D5-6927-01 5 90085607 90085607 A - GPR98 Frame_Shift_Del p.L4664Cfs*23 0.20 TCGA-D5-6927-01 5 93812905 93812905 A G KIAA0825 Silent p.L380L 0.08 TCGA-D5-6927-01 5 94006610 94006610 T - ANKRD32 Frame_Shift_Del p.W577Gfs*10 0.18 TCGA-D5-6927-01 5 99871500 99871500 C T FAM174A Missense_Mutation p.A89V 0.30 tolerated(0.32) possibly_damaging(0.581) TCGA-D5-6927-01 6 102337567 102337567 T C GRIK2 Missense_Mutation p.V526A 0.09 tolerated(0.47) benign(0.001) TCGA-D5-6927-01 6 105733385 105733385 C T PREP Missense_Mutation p.E509K 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 6 10586632 10586632 A G GCNT2 Intron 0.19 TCGA-D5-6927-01 6 108068059 108068059 C T SCML4 Silent p.G107G 0.21 TCGA-D5-6927-01 6 109775268 109775268 C - MICAL1 Frame_Shift_Del p.L45Cfs*121 0.22 TCGA-D5-6927-01 6 111587778 111587778 C T KIAA1919 Missense_Mutation p.P338L 0.26 deleterious(0) probably_damaging(0.997) TCGA-D5-6927-01 6 114264518 114264518 T - HDAC2 Frame_Shift_Del p.T459Qfs*47 0.08 TCGA-D5-6927-01 6 114379287 114379287 G A HS3ST5 Missense_Mutation p.R59C 0.19 deleterious(0) possibly_damaging(0.641) TCGA-D5-6927-01 6 116288716 116288716 G T FRK Missense_Mutation p.P266Q 0.25 tolerated(0.07) possibly_damaging(0.786) TCGA-D5-6927-01 6 117869512 117869512 C T DCBLD1 Intron 0.23 TCGA-D5-6927-01 6 12121829 12121829 G A HIVEP1 Missense_Mutation p.V601I 0.10 tolerated(0.5) benign(0.005) TCGA-D5-6927-01 6 127601428 127601428 C T RNF146 5'UTR 0.28 TCGA-D5-6927-01 6 137338199 137338199 T C IL20RA Missense_Mutation p.T44A 0.11 tolerated(0.21) benign(0.109) TCGA-D5-6927-01 6 139242175 139242175 G A REPS1 Silent p.S475S 0.27 TCGA-D5-6927-01 6 142399867 142399867 A G NMBR Missense_Mutation p.I199T 0.25 tolerated(0.42) benign(0.328) TCGA-D5-6927-01 6 151152904 151152904 G A PLEKHG1 Missense_Mutation p.R886H 0.15 tolerated(0.53) benign(0) TCGA-D5-6927-01 6 151673902 151673902 A - AKAP12 Frame_Shift_Del p.N1461Mfs*26 0.12 TCGA-D5-6927-01 6 151686632 151686633 - T ZBTB2 3'UTR 0.13 TCGA-D5-6927-01 6 152690147 152690147 T C SYNE1 Missense_Mutation p.Q3256R 0.35 probably_damaging(0.978) TCGA-D5-6927-01 6 152706966 152706967 - T SYNE1 Frame_Shift_Ins p.M2832Nfs*53 0.17 TCGA-D5-6927-01 6 152783935 152783935 T C SYNE1 Missense_Mutation p.K730E 0.09 benign(0.09) TCGA-D5-6927-01 6 159653414 159653414 G A FNDC1 Missense_Mutation p.A624T 0.25 tolerated_low_confidence(1) unknown(0) TCGA-D5-6927-01 6 160932101 160932101 A G LPAL2 5'Flank 0.27 TCGA-D5-6927-01 6 166827405 166827405 C A RPS6KA2 Missense_Mutation p.K659N 0.21 tolerated(0.21) benign(0.08) TCGA-D5-6927-01 6 170117956 170117956 T C PHF10 Silent p.R124R 0.06 TCGA-D5-6927-01 6 21596299 21596299 A C SOX4 3'UTR 0.15 TCGA-D5-6927-01 6 24466969 24466969 T C GPLD1 Missense_Mutation p.M254V 0.25 deleterious(0) benign(0.118) TCGA-D5-6927-01 6 27115125 27115127 ACA - HIST1H2AH In_Frame_Del p.N74del 0.28 TCGA-D5-6927-01 6 27840093 27840093 T C HIST1H3I Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0.02) benign(0.267) TCGA-D5-6927-01 6 30623220 30623220 A G DHX16 Missense_Mutation p.Y885H 0.07 deleterious(0) unknown(0) TCGA-D5-6927-01 6 30624769 30624769 C T DHX16 Missense_Mutation p.R703H 0.31 deleterious(0.01) unknown(0) TCGA-D5-6927-01 6 30671763 30671763 G A MDC1 Missense_Mutation p.L1733F 0.32 tolerated(0.65) possibly_damaging(0.822) TCGA-D5-6927-01 6 30861113 30861113 C T DDR1 Silent p.I420I 0.26 TCGA-D5-6927-01 6 30899840 30899840 T C SFTA2 Missense_Mutation p.T12A 0.32 tolerated_low_confidence(0.15) unknown(0) TCGA-D5-6927-01 6 31496822 31496822 T C MCCD1 Missense_Mutation p.Y11H 0.15 tolerated(0.15) benign(0.039) TCGA-D5-6927-01 6 3154816 3154816 G T TUBB2A Missense_Mutation p.L207M 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-D5-6927-01 6 31692530 31692530 C T C6orf25 Intron 0.24 TCGA-D5-6927-01 6 31940170 31940170 T C STK19 Silent p.G104G 0.11 TCGA-D5-6927-01 6 32407787 32407787 T C HLA-DRA Silent p.A20A 0.25 TCGA-D5-6927-01 6 32411004 32411004 T C HLA-DRA Missense_Mutation p.L124P 0.22 deleterious(0.02) benign(0.069) TCGA-D5-6927-01 6 32908560 32908560 G A HLA-DMB Silent p.L9L 0.29 TCGA-D5-6927-01 6 33690732 33690732 T C IP6K3 Missense_Mutation p.Q333R 0.28 tolerated(0.09) possibly_damaging(0.696) TCGA-D5-6927-01 6 34741354 34741355 - G SNRPC 3'UTR 0.21 TCGA-D5-6927-01 6 36867371 36867371 C - C6orf89 Frame_Shift_Del p.P60Rfs*7 0.27 TCGA-D5-6927-01 6 42152595 42152595 G A GUCA1B Silent p.S187S 0.22 TCGA-D5-6927-01 6 46424634 46424636 AAG - RCAN2 In_Frame_Del p.F26del 0.21 TCGA-D5-6927-01 6 65300272 65300273 - T EYS Frame_Shift_Ins p.E1830Rfs*16 0.23 TCGA-D5-6927-01 6 70854879 70854879 A - COL19A1 Frame_Shift_Del p.S585Afs*8 0.09 TCGA-D5-6927-01 6 7387260 7387260 A C CAGE1 Missense_Mutation p.H49Q 0.28 deleterious(0.03) benign(0.006) TCGA-D5-6927-01 6 73905003 73905003 G A KCNQ5 Missense_Mutation p.A908T 0.33 tolerated_low_confidence(0.15) benign(0.001) TCGA-D5-6927-01 6 74210448 74210448 G T MTO1 Missense_Mutation p.R730I 0.24 deleterious_low_confidence(0.03) benign(0.031) TCGA-D5-6927-01 6 76018424 76018424 C A FILIP1 Nonsense_Mutation p.G1209* 0.30 TCGA-D5-6927-01 6 82459344 82459344 T C FAM46A 3'UTR 0.34 TCGA-D5-6927-01 6 88229955 88229955 T - RARS2 Frame_Shift_Del p.K352Sfs*10 0.16 TCGA-D5-6927-01 6 90604803 90604803 A C GJA10 Missense_Mutation p.T206P 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6927-01 6 90661005 90661006 - C BACH2 Frame_Shift_Ins p.Q274Afs*3 0.20 TCGA-D5-6927-01 7 100212840 100212840 C T MOSPD3 3'UTR 0.21 TCGA-D5-6927-01 7 100484735 100484735 A G SRRT Missense_Mutation p.Y630C 0.29 deleterious(0) probably_damaging(0.99) TCGA-D5-6927-01 7 104746985 104746985 A - KMT2E Frame_Shift_Del p.K873Nfs*8 0.25 TCGA-D5-6927-01 7 105653386 105653386 C T CDHR3 Missense_Mutation p.A378V 0.15 tolerated(0.13) benign(0.139) TCGA-D5-6927-01 7 106921777 106921777 T C COG5 Missense_Mutation p.I546V 0.30 tolerated(0.56) benign(0.008) TCGA-D5-6927-01 7 116918197 116918197 C T WNT2 3'UTR 0.09 TCGA-D5-6927-01 7 120629651 120629651 G - CPED1 5'UTR 0.11 TCGA-D5-6927-01 7 12376883 12376883 G A VWDE Missense_Mutation p.P1461L 0.19 deleterious(0) possibly_damaging(0.891) TCGA-D5-6927-01 7 12610429 12610429 A G SCIN Missense_Mutation p.Y6C 0.36 deleterious(0.04) benign(0.371) TCGA-D5-6927-01 7 126544115 126544115 C A GRM8 Missense_Mutation p.S310I 0.22 deleterious(0.01) possibly_damaging(0.759) TCGA-D5-6927-01 7 127235723 127235723 C T FSCN3 Silent p.D169D 0.29 TCGA-D5-6927-01 7 135262590 135262590 T - NUP205 Frame_Shift_Del p.F233Lfs*9 0.08 TCGA-D5-6927-01 7 135263633 135263633 A G NUP205 Missense_Mutation p.R338G 0.25 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 7 137266624 137266624 A G DGKI Silent p.H538H 0.35 TCGA-D5-6927-01 7 138536987 138536987 G - KIAA1549 Frame_Shift_Del p.P1759Rfs*66 0.19 TCGA-D5-6927-01 7 138872193 138872193 T C TTC26 Silent p.L487L 0.13 TCGA-D5-6927-01 7 141424955 141424955 G A WEE2 Missense_Mutation p.V451I 0.32 tolerated(1) benign(0.012) TCGA-D5-6927-01 7 143001778 143001778 A G CASP2 Missense_Mutation p.M377V 0.29 deleterious(0.02) possibly_damaging(0.823) TCGA-D5-6927-01 7 147600759 147600759 G A CNTNAP2 Missense_Mutation p.R734H 0.20 tolerated(0.23) benign(0.015) TCGA-D5-6927-01 7 149172515 149172515 C T ZNF746 Missense_Mutation p.V300I 0.31 tolerated(0.16) possibly_damaging(0.899) TCGA-D5-6927-01 7 150163935 150163936 AG - GIMAP8 Frame_Shift_Del p.S53Lfs*12 0.25 TCGA-D5-6927-01 7 150325463 150325463 C T GIMAP6 Missense_Mutation p.V75M 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 7 150884648 150884648 G A ASB10 5'Flank 0.07 TCGA-D5-6927-01 7 150884879 150884879 C T ASB10 5'Flank 0.27 TCGA-D5-6927-01 7 156437333 156437333 A - RNF32 Frame_Shift_Del p.R54Efs*6 0.21 TCGA-D5-6927-01 7 1887420 1887420 C T AC110781.3 3'UTR 0.21 TCGA-D5-6927-01 7 25218794 25218794 C A C7orf31 Missense_Mutation p.R45M 0.21 deleterious(0) probably_damaging(0.961) TCGA-D5-6927-01 7 2584615 2584615 G A BRAT1 Missense_Mutation p.R120C 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 7 42005278 42005278 C T GLI3 Silent p.A1131A 0.18 TCGA-D5-6927-01 7 42005570 42005570 G A GLI3 Missense_Mutation p.A1034V 0.43 tolerated(0.68) benign(0.002) TCGA-D5-6927-01 7 4308345 4308345 A G SDK1 3'UTR 0.28 TCGA-D5-6927-01 7 43917890 43917890 C T URGCP Missense_Mutation p.R391H 0.23 tolerated(0.1) probably_damaging(0.999) TCGA-D5-6927-01 7 44079125 44079127 CTC - LINC00957 RNA 0.16 TCGA-D5-6927-01 7 44120413 44120414 - G POLM Frame_Shift_Ins p.A98Sfs*73 0.22 TCGA-D5-6927-01 7 51095587 51095587 T G COBL Missense_Mutation p.K1069T 0.23 deleterious(0) benign(0.367) TCGA-D5-6927-01 7 55540486 55540486 C T VOPP1 3'UTR 0.12 TCGA-D5-6927-01 7 5966101 5966101 C T RSPH10B Silent p.P837P 0.13 TCGA-D5-6927-01 7 6204984 6204984 G A CYTH3 Silent p.R349R 0.29 TCGA-D5-6927-01 7 6210533 6210533 G T CYTH3 Silent p.P213P 0.38 TCGA-D5-6927-01 7 6370760 6370760 C T FAM220A Missense_Mutation p.G9D 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-D5-6927-01 7 63808738 63808738 T - ZNF736 Frame_Shift_Del p.F167Lfs*31 0.17 TCGA-D5-6927-01 7 72738454 72738454 C T TRIM50 Missense_Mutation p.C111Y 0.07 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 7 74470113 74470113 C T WBSCR16 Missense_Mutation p.V376I 0.28 tolerated(0.52) benign(0.001) TCGA-D5-6927-01 7 76112076 76112076 C T DTX2 Missense_Mutation p.R174C 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 7 76953031 76953031 A - GSAP Frame_Shift_Del p.L619* 0.17 TCGA-D5-6927-01 7 81372753 81372753 G T HGF Missense_Mutation p.R261S 0.19 deleterious(0.03) probably_damaging(0.982) TCGA-D5-6927-01 7 87165800 87165800 C T ABCB1 Missense_Mutation p.A819T 0.20 deleterious(0) probably_damaging(0.938) TCGA-D5-6927-01 7 87913436 87913436 C T STEAP4 Missense_Mutation p.R50Q 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 7 90613531 90613531 A G CDK14 Missense_Mutation p.Q321R 0.26 tolerated(0.38) benign(0.07) TCGA-D5-6927-01 7 91763793 91763793 A G CYP51A1 5'UTR 0.29 TCGA-D5-6927-01 7 95125169 95125169 A G ASB4 Missense_Mutation p.D96G 0.28 tolerated(0.39) benign(0.248) TCGA-D5-6927-01 7 97946653 97946653 A G BAIAP2L1 Missense_Mutation p.Y122H 0.25 deleterious(0) benign(0.114) TCGA-D5-6927-01 7 99032617 99032617 C G ATP5J2-PTCD1 Missense_Mutation p.E132D 0.22 tolerated(0.66) benign(0.013) TCGA-D5-6927-01 7 99032620 99032620 G T ATP5J2-PTCD1 Missense_Mutation p.D131E 0.24 tolerated(0.47) benign(0.007) TCGA-D5-6927-01 7 99245817 99245817 T C CYP3A5 3'UTR 0.16 TCGA-D5-6927-01 7 99489911 99489913 AGA - TRIM4 In_Frame_Del p.F459del 0.13 TCGA-D5-6927-01 8 100732747 100732747 C T VPS13B Missense_Mutation p.R2303W 0.25 deleterious(0) benign(0.378) TCGA-D5-6927-01 8 100831720 100831720 G T VPS13B Missense_Mutation p.G2926V 0.20 tolerated(0.17) benign(0.018) TCGA-D5-6927-01 8 120797490 120797490 T - TAF2 Frame_Shift_Del p.I604Sfs*3 0.08 TCGA-D5-6927-01 8 121432151 121432151 G A MRPL13 Silent p.L112L 0.27 TCGA-D5-6927-01 8 125335611 125335611 G T TMEM65 Silent p.T141T 0.24 TCGA-D5-6927-01 8 125989846 125989846 G T ZNF572 Missense_Mutation p.G446C 0.25 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 8 131072852 131072852 G A ASAP1 Silent p.P1055P 0.28 TCGA-D5-6927-01 8 139825249 139825249 C T COL22A1 Missense_Mutation p.R420Q 0.26 unknown(0) TCGA-D5-6927-01 8 145109979 145109979 G - OPLAH Frame_Shift_Del p.H788Tfs*31 0.26 TCGA-D5-6927-01 8 145640364 145640364 C A SLC39A4 Missense_Mutation p.W266C 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6927-01 8 145667763 145667763 G A TONSL Missense_Mutation p.A204V 0.31 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 8 145773375 145773375 G - ARHGAP39 Frame_Shift_Del p.S366Rfs*18 0.24 TCGA-D5-6927-01 8 22675247 22675247 C T PEBP4 Missense_Mutation p.G87D 0.19 tolerated(0.69) benign(0.013) TCGA-D5-6927-01 8 26365888 26365888 G A PNMA2 Silent p.G128G 0.33 TCGA-D5-6927-01 8 27145295 27145295 C T TRIM35 Silent p.S418S 0.33 TCGA-D5-6927-01 8 27888758 27888758 A G NUGGC Splice_Site p.X636_splice 0.08 TCGA-D5-6927-01 8 30546680 30546680 G A GSR Silent p.L347L 0.11 TCGA-D5-6927-01 8 3063027 3063028 - A CSMD1 Frame_Shift_Ins p.V1662Rfs*15 0.25 TCGA-D5-6927-01 8 33367294 33367294 T C TTI2 Silent p.V268V 0.25 TCGA-D5-6927-01 8 37734975 37734975 T C RAB11FIP1 Missense_Mutation p.S156G 0.23 deleterious(0) probably_damaging(0.996) TCGA-D5-6927-01 8 48748994 48748994 C T PRKDC Missense_Mutation p.R2618H 0.29 benign(0.033) TCGA-D5-6927-01 8 48766677 48766677 G A PRKDC Missense_Mutation p.P2286L 0.23 probably_damaging(0.945) TCGA-D5-6927-01 8 59059443 59059443 T C FAM110B Silent p.S218S 0.24 TCGA-D5-6927-01 8 61178601 61178601 C T CA8 Silent p.S100S 0.38 TCGA-D5-6927-01 8 67062060 67062060 G C TRIM55 Missense_Mutation p.V262L 0.22 deleterious(0.04) benign(0.241) TCGA-D5-6927-01 8 68130139 68130139 C T ARFGEF1 Silent p.A1497A 0.20 TCGA-D5-6927-01 8 72234477 72234477 G A EYA1 Nonsense_Mutation p.R77* 0.14 TCGA-D5-6927-01 8 86019547 86019547 C T LRRCC1 Missense_Mutation p.A6V 0.20 tolerated_low_confidence(0.3) unknown(0) TCGA-D5-6927-01 8 87060836 87060836 C T PSKH2 Missense_Mutation p.R338Q 0.22 tolerated(1) benign(0.001) TCGA-D5-6927-01 8 92972383 92972383 A - RUNX1T1 3'UTR 0.24 TCGA-D5-6927-01 9 101552423 101552423 G A ANKS6 Silent p.D275D 0.18 TCGA-D5-6927-01 9 103091467 103091467 A - TEX10 Frame_Shift_Del p.F527Sfs*10 0.18 TCGA-D5-6927-01 9 111624664 111624664 C - ACTL7A Frame_Shift_Del p.L23Cfs*11 0.18 TCGA-D5-6927-01 9 114695180 114695180 T - UGCG Frame_Shift_Del p.L365Cfs*9 0.23 TCGA-D5-6927-01 9 115941002 115941002 T - FKBP15 Frame_Shift_Del p.K665Rfs*9 0.12 TCGA-D5-6927-01 9 117783442 117783442 C T TNC Silent p.R2200R 0.25 TCGA-D5-6927-01 9 117849317 117849317 G A TNC Silent p.C231C 0.23 TCGA-D5-6927-01 9 119094680 119094680 T C PAPPA Silent p.Y1110Y 0.24 TCGA-D5-6927-01 9 123342309 123342309 C - CDK5RAP2 5'UTR 0.16 TCGA-D5-6927-01 9 123768324 123768324 G A C5 Missense_Mutation p.A812V 0.29 deleterious(0) probably_damaging(0.911) TCGA-D5-6927-01 9 125154673 125154673 C T PTGS1 Silent p.G550G 0.30 TCGA-D5-6927-01 9 128099518 128099518 G A GAPVD1 Missense_Mutation p.R869K 0.19 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D5-6927-01 9 128124972 128124972 A T GAPVD1 Missense_Mutation p.M1471L 0.29 tolerated(0.11) benign(0.144) TCGA-D5-6927-01 9 129596037 129596037 G A ZBTB43 Missense_Mutation p.G417S 0.24 tolerated(0.37) probably_damaging(0.971) TCGA-D5-6927-01 9 129644094 129644094 A G ZBTB34 3'UTR 0.29 TCGA-D5-6927-01 9 130495628 130495628 C - TOR2A Intron 0.28 TCGA-D5-6927-01 9 13122107 13122107 C A MPDZ Missense_Mutation p.W1672C 0.31 deleterious(0) probably_damaging(0.972) TCGA-D5-6927-01 9 134136568 134136568 T C FAM78A Missense_Mutation p.S165G 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-D5-6927-01 9 134151300 134151300 G A FAM78A Silent p.G89G 0.25 TCGA-D5-6927-01 9 137710729 137710729 C T COL5A1 Silent p.D1458D 0.25 TCGA-D5-6927-01 9 139235499 139235499 G A GPSM1 Intron 0.24 TCGA-D5-6927-01 9 139342777 139342777 C T SEC16A Intron 0.21 TCGA-D5-6927-01 9 139906951 139906951 G A ABCA2 Missense_Mutation p.R1725C 0.35 deleterious(0) benign(0.067) TCGA-D5-6927-01 9 140508787 140508787 G A ARRDC1 Missense_Mutation p.V219I 0.27 tolerated(0.14) benign(0.094) TCGA-D5-6927-01 9 141016024 141016024 G A CACNA1B Missense_Mutation p.R2198H 0.34 deleterious(0) probably_damaging(0.998) TCGA-D5-6927-01 9 19296227 19296227 T C DENND4C Silent p.H341H 0.26 TCGA-D5-6927-01 9 19360253 19360253 A - DENND4C Frame_Shift_Del p.R1677Dfs*12 0.17 TCGA-D5-6927-01 9 3247720 3247720 T - RFX3 Intron 0.17 TCGA-D5-6927-01 9 35389883 35389883 G A UNC13B Missense_Mutation p.R963Q 0.19 tolerated(0.24) benign(0.017) TCGA-D5-6927-01 9 36966653 36966653 G A PAX5 Missense_Mutation p.R225W 0.26 deleterious(0) probably_damaging(0.999) TCGA-D5-6927-01 9 37442272 37442272 C - ZBTB5 Frame_Shift_Del p.E93Rfs*4 0.28 TCGA-D5-6927-01 9 38611256 38611256 T C ANKRD18A Silent p.L186L 0.03 TCGA-D5-6927-01 9 4118141 4118141 G A GLIS3 Missense_Mutation p.A446V 0.29 tolerated(0.2) benign(0.003) TCGA-D5-6927-01 9 4286207 4286207 G A GLIS3 Silent p.N73N 0.24 TCGA-D5-6927-01 9 5810057 5810057 G T ERMP1 Missense_Mutation p.A501D 0.20 deleterious(0.01) possibly_damaging(0.677) TCGA-D5-6927-01 9 72064672 72064672 A G APBA1 Missense_Mutation p.V670A 0.18 tolerated(0.23) probably_damaging(0.921) TCGA-D5-6927-01 9 75441863 75441863 A G TMC1 Silent p.R694R 0.08 TCGA-D5-6927-01 9 79403363 79403363 G A PRUNE2 Intron 0.27 TCGA-D5-6927-01 9 96055251 96055251 A T WNK2 Missense_Mutation p.D1872V 0.30 unknown(0) TCGA-D5-6927-01 9 98211514 98211514 G A PTCH1 Missense_Mutation p.T1214M 0.29 tolerated(0.3) benign(0.002) TCGA-D5-6927-01 X 100169827 100169827 G A XKRX Missense_Mutation p.P284S 0.10 deleterious(0) probably_damaging(0.999) TCGA-D5-6927-01 X 107681424 107681424 C T COL4A6 Intron 0.10 TCGA-D5-6927-01 X 108641793 108641793 C T GUCY2F Missense_Mutation p.D754N 0.56 tolerated(0.19) possibly_damaging(0.653) TCGA-D5-6927-01 X 110970894 110970894 T C ALG13 Missense_Mutation p.Y715H 0.45 deleterious(0) possibly_damaging(0.771) TCGA-D5-6927-01 X 110987993 110987993 A T ALG13 Silent p.P931P 0.20 TCGA-D5-6927-01 X 123587238 123587238 A T TENM1 Silent p.G1351G 0.53 TCGA-D5-6927-01 X 12905143 12905143 T - TLR7 Frame_Shift_Del p.F507Lfs*16 0.32 TCGA-D5-6927-01 X 130407684 130407684 G T IGSF1 3'UTR 0.52 TCGA-D5-6927-01 X 13056471 13056471 T C FAM9C 3'UTR 0.45 TCGA-D5-6927-01 X 135453547 135453547 G A GPR112 Missense_Mutation p.G2486D 0.07 tolerated(1) benign(0) TCGA-D5-6927-01 X 138643850 138643850 A C F9 Missense_Mutation p.I336L 0.26 tolerated(0.92) benign(0.081) TCGA-D5-6927-01 X 144910983 144910983 A G TMEM257 3'UTR 0.47 TCGA-D5-6927-01 X 154113735 154113735 C A H2AFB1 3'UTR 0.15 TCGA-D5-6927-01 X 17743982 17743982 C T NHS Nonsense_Mutation p.R565* 0.28 TCGA-D5-6927-01 X 19046349 19046349 A - GPR64 Frame_Shift_Del p.F122Lfs*21 0.31 TCGA-D5-6927-01 X 21674234 21674234 G T KLHL34 Missense_Mutation p.P558H 0.61 tolerated(0.08) possibly_damaging(0.687) TCGA-D5-6927-01 X 32456489 32456489 G A DMD Nonsense_Mutation p.R1314* 0.53 TCGA-D5-6927-01 X 47271999 47271999 A G ZNF157 Missense_Mutation p.N176S 0.15 tolerated(0.6) benign(0.016) TCGA-D5-6927-01 X 48417706 48417706 A G TBC1D25 Missense_Mutation p.H226R 0.17 tolerated(0.11) probably_damaging(0.991) TCGA-D5-6927-01 X 48434786 48434786 C T RBM3 Missense_Mutation p.R99C 0.46 tolerated(0.14) benign(0) TCGA-D5-6927-01 X 48832501 48832501 C A GRIPAP1 Missense_Mutation p.S736I 0.58 possibly_damaging(0.857) TCGA-D5-6927-01 X 48932827 48932827 C T WDR45 Missense_Mutation p.R315H 0.57 tolerated(0.09) possibly_damaging(0.498) TCGA-D5-6927-01 X 51487274 51487274 G T GSPT2 Missense_Mutation p.E184D 0.44 tolerated(0.23) benign(0.016) TCGA-D5-6927-01 X 52842213 52842213 A G XAGE5 Missense_Mutation p.Q41R 0.48 tolerated(0.23) benign(0.001) TCGA-D5-6927-01 X 53112052 53112052 G - TSPYL2 Frame_Shift_Del p.S127Afs*20 0.45 TCGA-D5-6927-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.17 TCGA-D5-6927-01 X 69255212 69255212 A G EDA Missense_Mutation p.Y310C 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D5-6927-01 X 88008922 88008922 T C CPXCR1 Silent p.N169N 0.51 TCGA-D5-6927-01 X 92966729 92966729 A G FAM133A 3'UTR 0.47 TCGA-D5-6928-01 10 101715927 101715927 C A DNMBP Missense_Mutation p.G435V 0.17 tolerated_low_confidence(0.27) benign(0.075) TCGA-D5-6928-01 10 102089873 102089873 G - PKD2L1 5'UTR 0.33 TCGA-D5-6928-01 10 102506014 102506014 C - PAX2 5'UTR 0.15 TCGA-D5-6928-01 10 104416989 104416989 G A TRIM8 Missense_Mutation p.V512I 0.23 tolerated_low_confidence(0.09) benign(0.06) TCGA-D5-6928-01 10 104474075 104474075 C - ARL3 5'UTR 0.25 TCGA-D5-6928-01 10 104849497 104849497 C G NT5C2 Missense_Mutation p.A540P 0.16 tolerated(0.06) benign(0.001) TCGA-D5-6928-01 10 105362870 105362870 G C SH3PXD2A Missense_Mutation p.S674C 0.17 tolerated_low_confidence(0.07) benign(0) TCGA-D5-6928-01 10 107005320 107005320 C T SORCS3 Silent p.S963S 0.08 TCGA-D5-6928-01 10 1126402 1126402 G A WDR37 Missense_Mutation p.A128T 0.14 tolerated(0.11) benign(0.015) TCGA-D5-6928-01 10 116931051 116931051 G A ATRNL1 Splice_Site p.X450_splice 0.19 TCGA-D5-6928-01 10 117075202 117075202 G A ATRNL1 Missense_Mutation p.C998Y 0.29 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 10 118396339 118396339 G A PNLIPRP2 Missense_Mutation p.G327E 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 10 118969547 118969547 G A KCNK18 Missense_Mutation p.A298T 0.12 deleterious(0) probably_damaging(0.951) TCGA-D5-6928-01 10 12129620 12129620 C T DHTKD1 Silent p.H203H 0.12 TCGA-D5-6928-01 10 121337241 121337241 A T TIAL1 Silent p.T205T 0.13 TCGA-D5-6928-01 10 121341690 121341691 - T TIAL1 Frame_Shift_Ins p.D109Rfs*31 0.16 TCGA-D5-6928-01 10 121663615 121663615 C T SEC23IP Silent p.S309S 0.14 TCGA-D5-6928-01 10 123970836 123970836 T G TACC2 Missense_Mutation p.L2299R 0.15 probably_damaging(0.999) TCGA-D5-6928-01 10 124273729 124273729 G A HTRA1 Missense_Mutation p.V433I 0.20 tolerated(0.46) benign(0.114) TCGA-D5-6928-01 10 126090395 126090395 A C OAT Missense_Mutation p.L305R 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 10 134999590 134999590 G A KNDC1 Silent p.P246P 0.15 TCGA-D5-6928-01 10 15120539 15120539 T C ACBD7 Missense_Mutation p.Y86C 0.17 deleterious(0) probably_damaging(0.951) TCGA-D5-6928-01 10 15255320 15255320 C A FAM171A1 Missense_Mutation p.R756M 0.09 deleterious(0) probably_damaging(0.982) TCGA-D5-6928-01 10 15326057 15326057 C T FAM171A1 Missense_Mutation p.V49I 0.29 tolerated(0.23) benign(0.006) TCGA-D5-6928-01 10 17156189 17156189 C T CUBN Splice_Site p.X241_splice 0.15 TCGA-D5-6928-01 10 18827239 18827239 G A CACNB2 Missense_Mutation p.R478H 0.15 deleterious(0.01) possibly_damaging(0.796) TCGA-D5-6928-01 10 19884187 19884187 A C MALRD1 Missense_Mutation p.Q1294H 0.17 tolerated(0.1) benign(0.07) TCGA-D5-6928-01 10 26500868 26500868 C T MYO3A Silent p.R1609R 0.15 TCGA-D5-6928-01 10 29599965 29599965 A - LYZL1 Frame_Shift_Del p.G190Afs*19 0.11 TCGA-D5-6928-01 10 3155602 3155602 C T PFKP Silent p.P421P 0.16 TCGA-D5-6928-01 10 3199150 3199150 A - PITRM1 Frame_Shift_Del p.L485Cfs*5 0.10 TCGA-D5-6928-01 10 35327980 35327980 G A CUL2 Nonsense_Mutation p.R268* 0.25 TCGA-D5-6928-01 10 35456688 35456688 G A CREM Intron 0.11 TCGA-D5-6928-01 10 43609027 43609027 G A RET Missense_Mutation p.E595K 0.16 tolerated(0.23) possibly_damaging(0.456) TCGA-D5-6928-01 10 43651028 43651028 G T CSGALNACT2 Missense_Mutation p.G144V 0.18 deleterious(0.05) possibly_damaging(0.661) TCGA-D5-6928-01 10 460017 460017 T C DIP2C Missense_Mutation p.E298G 0.15 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 10 46028655 46028655 C T MARCH8 Missense_Mutation p.S2N 0.11 tolerated_low_confidence(0.59) benign(0.002) TCGA-D5-6928-01 10 48372172 48372172 C T ZNF488 3'UTR 0.13 TCGA-D5-6928-01 10 48416483 48416483 T C GDF2 Missense_Mutation p.N71D 0.17 deleterious(0.01) probably_damaging(1) TCGA-D5-6928-01 10 49386001 49386001 G C FRMPD2 Intron 0.21 TCGA-D5-6928-01 10 49395263 49395264 AG - FRMPD2 Frame_Shift_Del p.S746Wfs*14 0.15 TCGA-D5-6928-01 10 49612895 49612895 C T MAPK8 Silent p.C41C 0.16 TCGA-D5-6928-01 10 51974529 51974529 C T ASAH2 Missense_Mutation p.A372T 0.12 tolerated(0.4) benign(0.146) TCGA-D5-6928-01 10 61828580 61828580 T - ANK3 Frame_Shift_Del p.K4020Rfs*45 0.17 TCGA-D5-6928-01 10 64565386 64565386 G A ADO Silent p.R189R 0.16 TCGA-D5-6928-01 10 64573486 64573486 G T EGR2 Silent p.A304A 0.15 TCGA-D5-6928-01 10 70405823 70405823 C T TET1 Nonsense_Mutation p.Q1113* 0.16 TCGA-D5-6928-01 10 73048335 73048335 G A UNC5B Silent p.A304A 0.13 TCGA-D5-6928-01 10 73269849 73269849 G A CDH23-AS1 Intron 0.14 TCGA-D5-6928-01 10 7327788 7327788 T C SFMBT2 Intron 0.17 TCGA-D5-6928-01 10 73475768 73475768 G A C10orf105 Silent p.T109T 0.15 TCGA-D5-6928-01 10 75408259 75408259 G T SYNPO2L Missense_Mutation p.S384Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 10 76910270 76910270 A C SAMD8 Splice_Site 0.20 TCGA-D5-6928-01 10 7765471 7765471 A - ITIH2 Frame_Shift_Del p.N310Tfs*8 0.09 TCGA-D5-6928-01 10 8100644 8100644 C T GATA3 Silent p.T206T 0.16 TCGA-D5-6928-01 10 81037001 81037001 G A ZMIZ1 Missense_Mutation p.R115H 0.26 probably_damaging(0.994) TCGA-D5-6928-01 10 81146031 81146031 G A ZCCHC24 3'UTR 0.16 TCGA-D5-6928-01 10 81374859 81374859 C - SFTPA1 3'Flank 0.16 TCGA-D5-6928-01 10 84625167 84625167 C T NRG3 Missense_Mutation p.T343I 0.16 tolerated(0.41) probably_damaging(0.961) TCGA-D5-6928-01 10 90365424 90365424 G - LIPJ Frame_Shift_Del p.G278Afs*5 0.13 TCGA-D5-6928-01 10 90773996 90773996 A T FAS Missense_Mutation p.N266I 0.18 deleterious(0) probably_damaging(0.989) TCGA-D5-6928-01 10 91195912 91195912 G A SLC16A12 Missense_Mutation p.T398I 0.15 tolerated(0.27) probably_damaging(0.99) TCGA-D5-6928-01 10 93011118 93011118 A G PCGF5 Missense_Mutation p.Y132C 0.15 tolerated(0.06) probably_damaging(0.976) TCGA-D5-6928-01 10 93155 93155 C T TUBB8 Missense_Mutation p.A393T 0.13 deleterious_low_confidence(0) benign(0.333) TCGA-D5-6928-01 10 93272047 93272047 A T HECTD2 Missense_Mutation p.N746I 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 10 94828318 94828318 G A CYP26C1 Missense_Mutation p.R478H 0.19 deleterious(0.02) probably_damaging(0.939) TCGA-D5-6928-01 10 98823996 98823996 C A SLIT1 Silent p.L186L 0.21 TCGA-D5-6928-01 10 99219824 99219824 C T MMS19 Missense_Mutation p.G879S 0.10 deleterious(0.01) benign(0.41) TCGA-D5-6928-01 11 100170065 100170065 G A CNTN5 Missense_Mutation p.V853I 0.23 deleterious(0.02) probably_damaging(0.956) TCGA-D5-6928-01 11 1026419 1026419 G A MUC6 Silent p.D818D 0.21 TCGA-D5-6928-01 11 102980394 102980394 C T DYNC2H1 Missense_Mutation p.P31S 0.13 benign(0.001) TCGA-D5-6928-01 11 104905219 104905219 A G CASP1 Intron 0.15 TCGA-D5-6928-01 11 105880479 105880479 G A MSANTD4 Missense_Mutation p.P274L 0.14 tolerated(0.12) benign(0.001) TCGA-D5-6928-01 11 10673801 10673801 G A MRVI1 Intron 0.15 TCGA-D5-6928-01 11 108186742 108186742 C T ATM Nonsense_Mutation p.R2034* 0.21 TCGA-D5-6928-01 11 108559671 108559671 C T DDX10 Missense_Mutation p.A286V 0.08 tolerated(0.1) probably_damaging(0.94) TCGA-D5-6928-01 11 110134857 110134857 G T RDX Missense_Mutation p.Q99K 0.11 tolerated(0.07) benign(0.266) TCGA-D5-6928-01 11 113628482 113628482 C T ZW10 Missense_Mutation p.R276H 0.21 tolerated(0.11) benign(0.009) TCGA-D5-6928-01 11 1155738 1155738 C T MUC5AC Silent p.G142G 0.28 TCGA-D5-6928-01 11 117161343 117161343 C T BACE1 Silent p.T375T 0.18 TCGA-D5-6928-01 11 117863971 117863971 G A IL10RA Missense_Mutation p.G128D 0.15 tolerated(0.43) benign(0.013) TCGA-D5-6928-01 11 118255623 118255623 T C UBE4A Missense_Mutation p.M799T 0.21 deleterious(0.02) benign(0.015) TCGA-D5-6928-01 11 118378315 118378315 A G KMT2A Missense_Mutation p.Q3609R 0.18 benign(0.03) TCGA-D5-6928-01 11 118516459 118516459 T C PHLDB1 Silent p.S1141S 0.27 TCGA-D5-6928-01 11 118774005 118774005 C - BCL9L Frame_Shift_Del p.G230Afs*62 0.24 TCGA-D5-6928-01 11 11941719 11941719 C T USP47 Missense_Mutation p.A261V 0.22 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 11 120996317 120996317 G A TECTA Missense_Mutation p.V504I 0.15 tolerated(0.22) benign(0.001) TCGA-D5-6928-01 11 123601654 123601654 G A ZNF202 5'UTR 0.19 TCGA-D5-6928-01 11 123886504 123886504 A T OR10G4 Missense_Mutation p.T75S 0.13 tolerated(0.4) benign(0.333) TCGA-D5-6928-01 11 126146982 126146982 C A FOXRED1 Missense_Mutation p.P373Q 0.18 tolerated(0.09) possibly_damaging(0.703) TCGA-D5-6928-01 11 126391275 126391275 G A KIRREL3 Missense_Mutation p.A123V 0.20 deleterious(0) possibly_damaging(0.69) TCGA-D5-6928-01 11 1265444 1265444 C T MUC5B Missense_Mutation p.T2445M 0.16 unknown(0) TCGA-D5-6928-01 11 128680376 128680376 G A FLI1 Nonsense_Mutation p.W284* 0.10 TCGA-D5-6928-01 11 128781784 128781784 G A KCNJ5 Missense_Mutation p.A206T 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-D5-6928-01 11 134010571 134010571 C T JAM3 Silent p.I54I 0.18 TCGA-D5-6928-01 11 134047272 134047272 C T NCAPD3 Missense_Mutation p.V955M 0.09 tolerated(0.08) benign(0.223) TCGA-D5-6928-01 11 1411551 1411551 G A BRSK2 Missense_Mutation p.A13T 0.29 tolerated(0.25) benign(0.027) TCGA-D5-6928-01 11 14317370 14317370 A G RRAS2 Missense_Mutation p.I47T 0.09 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 11 1477640 1477640 G - BRSK2 Frame_Shift_Del p.P626Qfs*55 0.26 TCGA-D5-6928-01 11 15267664 15267664 T C INSC 3'UTR 0.10 TCGA-D5-6928-01 11 17532010 17532010 T G USH1C Missense_Mutation p.E491A 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D5-6928-01 11 18195826 18195826 G A MRGPRX4 3'UTR 0.14 TCGA-D5-6928-01 11 18478133 18478133 C T LDHAL6A 5'UTR 0.17 TCGA-D5-6928-01 11 18636995 18636995 C T SPTY2D1 Missense_Mutation p.A276T 0.16 tolerated(0.58) benign(0.007) TCGA-D5-6928-01 11 18727639 18727639 G A IGSF22 Missense_Mutation p.A1212V 0.29 tolerated(0.21) benign(0.015) TCGA-D5-6928-01 11 18754846 18754846 C T PTPN5 Missense_Mutation p.R385H 0.10 tolerated(0.05) benign(0.058) TCGA-D5-6928-01 11 2181057 2181057 G A INS 3'UTR 0.15 TCGA-D5-6928-01 11 2190879 2190879 C T TH Splice_Site p.X135_splice 0.16 TCGA-D5-6928-01 11 233494 233494 C T SIRT3 Missense_Mutation p.A108T 0.11 tolerated(0.19) benign(0.055) TCGA-D5-6928-01 11 294327 294327 C T ATHL1 Silent p.S623S 0.12 TCGA-D5-6928-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.21 TCGA-D5-6928-01 11 3111119 3111119 C T OSBPL5 Missense_Mutation p.E820K 0.19 tolerated(0.3) benign(0.283) TCGA-D5-6928-01 11 32460981 32460981 G A WT1 5'Flank 0.09 TCGA-D5-6928-01 11 3249408 3249408 G - MRGPRE Frame_Shift_Del p.Q207Sfs*103 0.14 TCGA-D5-6928-01 11 32635181 32635181 T - CCDC73 Frame_Shift_Del p.T895Lfs*8 0.12 TCGA-D5-6928-01 11 3661144 3661144 A G ART5 Missense_Mutation p.L172P 0.18 tolerated(0.1) benign(0.104) TCGA-D5-6928-01 11 3726528 3726528 C T NUP98 Missense_Mutation p.R995H 0.15 tolerated(0.41) benign(0.002) TCGA-D5-6928-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.23 TCGA-D5-6928-01 11 4406567 4406567 G T TRIM21 Missense_Mutation p.P459H 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 11 45672318 45672318 G T CHST1 Silent p.T52T 0.15 TCGA-D5-6928-01 11 45892468 45892468 G T CRY2 Missense_Mutation p.G563V 0.15 deleterious_low_confidence(0.01) benign(0.051) TCGA-D5-6928-01 11 45918406 45918407 - C MAPK8IP1 Intron 0.11 TCGA-D5-6928-01 11 46918542 46918542 G A LRP4 Missense_Mutation p.T267I 0.14 tolerated(0.14) benign(0.045) TCGA-D5-6928-01 11 47199528 47199528 C T PACSIN3 Missense_Mutation p.R410H 0.15 tolerated(0.06) benign(0.019) TCGA-D5-6928-01 11 48328242 48328242 G A OR4S1 Silent p.L156L 0.13 TCGA-D5-6928-01 11 5410665 5410665 C T OR51M1 Silent p.L13L 0.08 TCGA-D5-6928-01 11 5510493 5510493 G A OR52D1 Missense_Mutation p.G186D 0.08 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 11 55110728 55110728 G T OR4A16 Missense_Mutation p.D18Y 0.27 deleterious_low_confidence(0.02) benign(0.417) TCGA-D5-6928-01 11 55432661 55432661 G A OR4C6 Missense_Mutation p.V7M 0.13 deleterious_low_confidence(0.04) benign(0.038) TCGA-D5-6928-01 11 55563963 55563963 T C OR5D14 Missense_Mutation p.V311A 0.24 deleterious(0.04) benign(0.001) TCGA-D5-6928-01 11 55653129 55653129 C T TRIM51 Silent p.F75F 0.17 TCGA-D5-6928-01 11 55927316 55927316 T G OR8K5 Missense_Mutation p.T160P 0.23 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-D5-6928-01 11 56086173 56086173 C T OR8K3 Silent p.L131L 0.18 TCGA-D5-6928-01 11 56345141 56345141 G A OR5M10 Silent p.D19D 0.11 TCGA-D5-6928-01 11 57135879 57135879 G A P2RX3 Missense_Mutation p.S324N 0.09 tolerated(1) benign(0.002) TCGA-D5-6928-01 11 57512833 57512833 A G BTBD18 Silent p.N304N 0.19 TCGA-D5-6928-01 11 59861491 59861491 T C MS4A2 Missense_Mutation p.S198P 0.26 tolerated(0.26) probably_damaging(0.964) TCGA-D5-6928-01 11 60702895 60702895 G A TMEM132A Missense_Mutation p.A671T 0.21 tolerated(0.46) benign(0.279) TCGA-D5-6928-01 11 60703937 60703937 G A TMEM132A Missense_Mutation p.R878H 0.15 tolerated(1) probably_damaging(0.984) TCGA-D5-6928-01 11 61257335 61257335 C T PPP1R32 Silent p.Y375Y 0.12 TCGA-D5-6928-01 11 61563849 61563849 G A FEN1 Missense_Mutation p.R339H 0.15 deleterious(0) probably_damaging(0.993) TCGA-D5-6928-01 11 62286305 62286305 G A AHNAK Missense_Mutation p.S5195F 0.15 probably_damaging(0.991) TCGA-D5-6928-01 11 62295443 62295443 G T AHNAK Missense_Mutation p.P2149H 0.14 probably_damaging(0.987) TCGA-D5-6928-01 11 63668521 63668521 C A MARK2 Missense_Mutation p.L361M 0.16 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 11 63885085 63885085 A G FLRT1 Missense_Mutation p.D449G 0.12 deleterious(0.05) benign(0.209) TCGA-D5-6928-01 11 63886076 63886079 TTTC - FLRT1 3'UTR 0.14 TCGA-D5-6928-01 11 63992064 63992064 C T TRPT1 Silent p.T153T 0.16 TCGA-D5-6928-01 11 63994276 63994276 C T NUDT22 Missense_Mutation p.A51V 0.10 tolerated(0.15) benign(0.098) TCGA-D5-6928-01 11 64390432 64390432 C T NRXN2 Silent p.A1322A 0.16 TCGA-D5-6928-01 11 64417957 64417957 C T NRXN2 Silent p.T1024T 0.14 TCGA-D5-6928-01 11 64460332 64460332 C T NRXN2 Silent p.T255T 0.19 TCGA-D5-6928-01 11 64600379 64600379 G A CDC42BPG Silent p.P928P 0.14 TCGA-D5-6928-01 11 64665769 64665769 G T ATG2A Silent p.R1579R 0.16 TCGA-D5-6928-01 11 64693325 64693325 G - PPP2R5B Frame_Shift_Del p.R42Afs*36 0.25 TCGA-D5-6928-01 11 64813303 64813303 C T NAALADL1 Missense_Mutation p.R676H 0.18 tolerated(0.14) benign(0.022) TCGA-D5-6928-01 11 64895945 64895945 C T SYVN1 Missense_Mutation p.G588D 0.26 tolerated(0.62) unknown(0) TCGA-D5-6928-01 11 65000661 65000661 C A SLC22A20 RNA 0.12 TCGA-D5-6928-01 11 65124668 65124668 G T TIGD3 Missense_Mutation p.E463D 0.16 tolerated(0.81) benign(0.004) TCGA-D5-6928-01 11 65147401 65147401 C T SLC25A45 Silent p.L30L 0.13 TCGA-D5-6928-01 11 65402797 65402797 C T PCNXL3 Missense_Mutation p.R1688C 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 11 65655154 65655154 T C FIBP Missense_Mutation p.K110E 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-D5-6928-01 11 6579215 6579215 G A DNHD1 Missense_Mutation p.R2897H 0.10 probably_damaging(0.91) TCGA-D5-6928-01 11 66034181 66034181 C T KLC2 Intron 0.14 TCGA-D5-6928-01 11 66083686 66083686 G A CD248 Silent p.C271C 0.19 TCGA-D5-6928-01 11 66114221 66114221 G A B3GNT1 Missense_Mutation p.R266C 0.15 tolerated(0.08) probably_damaging(0.917) TCGA-D5-6928-01 11 66276691 66276691 G A DPP3 Missense_Mutation p.G728D 0.13 tolerated_low_confidence(0.65) benign(0.003) TCGA-D5-6928-01 11 6629384 6629384 G T ILK Silent p.G66G 0.14 TCGA-D5-6928-01 11 6636487 6636487 C T TPP1 Missense_Mutation p.R447H 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 11 67262680 67262680 C A PITPNM1 Missense_Mutation p.W833C 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 11 68030115 68030115 C T C11orf24 Silent p.A116A 0.16 TCGA-D5-6928-01 11 68201132 68201132 G - LRP5 Frame_Shift_Del p.A1277Pfs*162 0.18 TCGA-D5-6928-01 11 69062751 69062751 C T MYEOV Intron 0.20 TCGA-D5-6928-01 11 6913200 6913200 A G OR2D2 Missense_Mutation p.F178L 0.22 tolerated(0.07) possibly_damaging(0.764) TCGA-D5-6928-01 11 70052283 70052283 G C FADD Missense_Mutation p.D111H 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-D5-6928-01 11 7060039 7060039 G A NLRP14 Silent p.V74V 0.15 TCGA-D5-6928-01 11 71725245 71725245 C T NUMA1 Missense_Mutation p.A1102T 0.10 benign(0.003) TCGA-D5-6928-01 11 722434 722434 C T EPS8L2 Missense_Mutation p.R365C 0.16 deleterious(0.04) benign(0.081) TCGA-D5-6928-01 11 73074307 73074307 G T ARHGEF17 Nonsense_Mutation p.E1685* 0.21 TCGA-D5-6928-01 11 7334940 7334940 A G SYT9 Missense_Mutation p.K271R 0.12 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 11 73638381 73638381 C T PAAF1 Nonsense_Mutation p.R385* 0.16 TCGA-D5-6928-01 11 74421989 74421989 G A CHRDL2 Missense_Mutation p.H113Y 0.12 tolerated(1) benign(0.003) TCGA-D5-6928-01 11 74994454 74994454 C T ARRB1 Silent p.K77K 0.15 TCGA-D5-6928-01 11 76371564 76371564 C T LRRC32 Missense_Mutation p.R358H 0.18 tolerated(0.7) benign(0.001) TCGA-D5-6928-01 11 7689748 7689748 T - CYB5R2 Frame_Shift_Del p.T145Hfs*8 0.12 TCGA-D5-6928-01 11 76954793 76954793 T - GDPD4 Frame_Shift_Del p.N396Tfs*5 0.08 TCGA-D5-6928-01 11 8752138 8752138 G A ST5 Silent p.S233S 0.20 TCGA-D5-6928-01 11 89534135 89534135 T C TRIM49 Missense_Mutation p.R254G 0.08 deleterious(0) benign(0.299) TCGA-D5-6928-01 11 92257946 92257946 C T FAT3 Silent p.L1147L 0.10 TCGA-D5-6928-01 11 93127767 93127767 A - CCDC67 Frame_Shift_Del p.K396Nfs*3 0.14 TCGA-D5-6928-01 11 94924618 94924618 G A SESN3 Missense_Mutation p.R98C 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-D5-6928-01 11 95825221 95825221 C T MAML2 Silent p.Q658Q 0.23 TCGA-D5-6928-01 12 102061583 102061583 T C MYBPC1 Silent p.D803D 0.28 TCGA-D5-6928-01 12 102589923 102589923 A - PARPBP Frame_Shift_Del p.N533Mfs*19 0.12 TCGA-D5-6928-01 12 104336432 104336432 C T HSP90B1 Missense_Mutation p.S501L 0.11 deleterious(0.01) possibly_damaging(0.669) TCGA-D5-6928-01 12 105238267 105238267 A G SLC41A2 Missense_Mutation p.F507L 0.10 tolerated(0.98) benign(0.002) TCGA-D5-6928-01 12 106532316 106532316 G A NUAK1 Missense_Mutation p.P39L 0.22 tolerated(0.05) benign(0.122) TCGA-D5-6928-01 12 108169031 108169031 G T ASCL4 Missense_Mutation p.L13F 0.17 tolerated(0.05) possibly_damaging(0.77) TCGA-D5-6928-01 12 109617087 109617087 C T ACACB Silent p.F544F 0.14 TCGA-D5-6928-01 12 109690889 109690889 G A ACACB Missense_Mutation p.V1991I 0.15 tolerated(0.14) benign(0.112) TCGA-D5-6928-01 12 109936111 109936111 G A UBE3B Missense_Mutation p.R298H 0.11 deleterious(0.02) benign(0.186) TCGA-D5-6928-01 12 110206951 110206951 T C FAM222A Missense_Mutation p.L406P 0.27 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 12 110397662 110397662 C T GIT2 Silent p.S363S 0.22 TCGA-D5-6928-01 12 110897537 110897537 G A GPN3 Silent p.G135G 0.15 TCGA-D5-6928-01 12 111748178 111748178 G A CUX2 Missense_Mutation p.G531D 0.14 tolerated(0.16) benign(0.004) TCGA-D5-6928-01 12 11183891 11183891 A G TAS2R31 Missense_Mutation p.V15A 0.11 tolerated(0.55) possibly_damaging(0.472) TCGA-D5-6928-01 12 112228316 112228316 G A ALDH2 Missense_Mutation p.A211T 0.13 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 12 112451266 112451266 C G ERP29 5'UTR 0.34 TCGA-D5-6928-01 12 113442787 113442787 G A OAS2 Missense_Mutation p.D410N 0.25 deleterious(0.02) benign(0.098) TCGA-D5-6928-01 12 113907132 113907132 G A LHX5 Silent p.C64C 0.15 TCGA-D5-6928-01 12 116460325 116460325 C T MED13L Silent p.Q187Q 0.20 TCGA-D5-6928-01 12 117013966 117013966 C T MAP1LC3B2 Silent p.L73L 0.08 TCGA-D5-6928-01 12 117178206 117178206 G - RNFT2 5'UTR 0.33 TCGA-D5-6928-01 12 117612095 117612095 G A FBXO21 Missense_Mutation p.A264V 0.11 tolerated(0.06) possibly_damaging(0.624) TCGA-D5-6928-01 12 117968779 117968779 T C KSR2 Missense_Mutation p.Q590R 0.12 tolerated(0.22) benign(0.116) TCGA-D5-6928-01 12 120572397 120572397 A G GCN1L1 Missense_Mutation p.V2381A 0.08 benign(0.235) TCGA-D5-6928-01 12 120659537 120659537 G T PXN Silent p.G240G 0.13 TCGA-D5-6928-01 12 121094004 121094004 G A CABP1 Intron 0.36 TCGA-D5-6928-01 12 121154465 121154465 C T UNC119B Silent p.D131D 0.08 TCGA-D5-6928-01 12 121174811 121174811 G A ACADS Missense_Mutation p.G78E 0.16 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 12 121712131 121712131 C T CAMKK2 Missense_Mutation p.G67S 0.12 tolerated_low_confidence(0.2) benign(0.004) TCGA-D5-6928-01 12 122247988 122247988 C A SETD1B Silent p.A379A 0.14 TCGA-D5-6928-01 12 122691847 122691847 G A B3GNT4 Missense_Mutation p.R350H 0.21 deleterious(0.05) benign(0.051) TCGA-D5-6928-01 12 123346041 123346041 G A HIP1R Missense_Mutation p.A1047T 0.10 tolerated(0.18) benign(0.003) TCGA-D5-6928-01 12 123355505 123355505 C T VPS37B Missense_Mutation p.R72H 0.10 tolerated(0.11) benign(0.004) TCGA-D5-6928-01 12 124350516 124350516 G A DNAH10 Missense_Mutation p.A2237T 0.14 probably_damaging(0.992) TCGA-D5-6928-01 12 125470680 125470680 G A DHX37 Silent p.L80L 0.14 TCGA-D5-6928-01 12 125603260 125603260 C - AACS Frame_Shift_Del p.L359Wfs*15 0.32 TCGA-D5-6928-01 12 12871794 12871794 G T CDKN1B Nonsense_Mutation p.E171* 0.13 TCGA-D5-6928-01 12 132393245 132393245 G A ULK1 Missense_Mutation p.A125T 0.17 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 12 133266902 133266902 G A PXMP2 Missense_Mutation p.R59Q 0.15 tolerated(0.51) benign(0.007) TCGA-D5-6928-01 12 133778928 133778928 A G ZNF268 Missense_Mutation p.Y219C 0.07 deleterious(0.02) possibly_damaging(0.635) TCGA-D5-6928-01 12 14958867 14958867 A G SMCO3 3'UTR 0.19 TCGA-D5-6928-01 12 15035139 15035139 G A MGP Silent p.Y107Y 0.21 TCGA-D5-6928-01 12 19410380 19410381 - A PLEKHA5 Frame_Shift_Ins p.V152Sfs*3 0.12 TCGA-D5-6928-01 12 1987488 1987488 C A CACNA2D4 Missense_Mutation p.R571L 0.20 deleterious(0) probably_damaging(0.967) TCGA-D5-6928-01 12 21446971 21446971 T - SLCO1A2 Frame_Shift_Del p.I449Yfs*29 0.13 TCGA-D5-6928-01 12 21450336 21450336 A G SLCO1A2 Splice_Site p.X359_splice 0.17 TCGA-D5-6928-01 12 21629861 21629861 T C RECQL Silent p.R311R 0.32 TCGA-D5-6928-01 12 21919128 21919128 G A KCNJ8 Silent p.C268C 0.14 TCGA-D5-6928-01 12 22005312 22005312 T C ABCC9 Missense_Mutation p.H878R 0.10 deleterious(0) benign(0.413) TCGA-D5-6928-01 12 266260 266260 C T IQSEC3 Silent p.H741H 0.19 TCGA-D5-6928-01 12 27521246 27521246 G A ARNTL2 Missense_Mutation p.R28H 0.08 tolerated(0.67) benign(0) TCGA-D5-6928-01 12 28603137 28603138 - A CCDC91 Frame_Shift_Ins p.E271Rfs*30 0.23 TCGA-D5-6928-01 12 302463 302463 G T SLC6A12 Missense_Mutation p.L504M 0.30 tolerated(0.06) probably_damaging(0.917) TCGA-D5-6928-01 12 39709040 39709040 G A KIF21A Missense_Mutation p.S1317F 0.12 tolerated(0.07) benign(0.005) TCGA-D5-6928-01 12 406271 406271 C T KDM5A Missense_Mutation p.M1390I 0.37 tolerated_low_confidence(0.09) benign(0.439) TCGA-D5-6928-01 12 42555460 42555461 - T YAF2 Frame_Shift_Ins p.S111Kfs*2 0.09 TCGA-D5-6928-01 12 43819489 43819489 G A ADAMTS20 Missense_Mutation p.S1371L 0.20 deleterious(0) benign(0.138) TCGA-D5-6928-01 12 46233199 46233199 C A ARID2 Missense_Mutation p.S473Y 0.16 deleterious(0.02) benign(0.347) TCGA-D5-6928-01 12 48062755 48062755 C T RPAP3 Missense_Mutation p.E553K 0.16 deleterious(0) probably_damaging(0.974) TCGA-D5-6928-01 12 48578155 48578155 C T C12orf68 Nonsense_Mutation p.R84* 0.13 TCGA-D5-6928-01 12 49171482 49171482 G A ADCY6 Missense_Mutation p.A351V 0.10 deleterious(0) possibly_damaging(0.848) TCGA-D5-6928-01 12 49176451 49176451 C T ADCY6 Missense_Mutation p.R256H 0.15 deleterious(0.03) probably_damaging(0.98) TCGA-D5-6928-01 12 4920259 4920259 G A KCNA6 Missense_Mutation p.R351H 0.12 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 12 49259535 49259535 C - RND1 Frame_Shift_Del p.A6Pfs*28 0.29 TCGA-D5-6928-01 12 49948274 49948274 C T KCNH3 Silent p.R691R 0.34 TCGA-D5-6928-01 12 50036783 50036783 G A PRPF40B Missense_Mutation p.R730H 0.15 deleterious(0.04) possibly_damaging(0.715) TCGA-D5-6928-01 12 50153044 50153044 T A TMBIM6 Missense_Mutation p.V243D 0.26 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 12 5020694 5020694 G A KCNA1 Silent p.T50T 0.16 TCGA-D5-6928-01 12 5021171 5021171 G A KCNA1 Silent p.T209T 0.17 TCGA-D5-6928-01 12 5021590 5021590 C T KCNA1 Missense_Mutation p.A349V 0.12 tolerated(0.4) benign(0.012) TCGA-D5-6928-01 12 50744178 50744178 A G FAM186A Missense_Mutation p.M2146T 0.08 tolerated(1) benign(0.001) TCGA-D5-6928-01 12 50822829 50822829 T - LARP4 Frame_Shift_Del p.L94* 0.19 TCGA-D5-6928-01 12 51364272 51364272 A C HIGD1C Missense_Mutation p.S93R 0.10 tolerated(0.22) benign(0.015) TCGA-D5-6928-01 12 51386098 51386098 G A SLC11A2 Missense_Mutation p.R437C 0.20 deleterious(0) benign(0.445) TCGA-D5-6928-01 12 5154210 5154210 C T KCNA5 Silent p.N299N 0.09 TCGA-D5-6928-01 12 51639993 51639993 G A DAZAP2 3'Flank 0.26 TCGA-D5-6928-01 12 51751154 51751154 G A GALNT6 Silent p.C527C 0.29 TCGA-D5-6928-01 12 52093494 52093494 G A SCN8A Missense_Mutation p.V283M 0.15 tolerated(0.12) benign(0.353) TCGA-D5-6928-01 12 52099401 52099401 G T SCN8A Missense_Mutation p.E445D 0.13 tolerated(0.18) benign(0.008) TCGA-D5-6928-01 12 52159715 52159715 G T SCN8A Silent p.G935G 0.11 TCGA-D5-6928-01 12 52307539 52307539 C T ACVRL1 Silent p.G170G 0.15 TCGA-D5-6928-01 12 52374818 52374818 G A ACVR1B Missense_Mutation p.G216S 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 12 52841348 52841348 G A KRT6B Silent p.G478G 0.12 TCGA-D5-6928-01 12 52946514 52946514 G A KRT71 Silent p.N116N 0.28 TCGA-D5-6928-01 12 53084965 53084965 C T KRT77 Missense_Mutation p.R574K 0.08 tolerated_low_confidence(0.92) unknown(0) TCGA-D5-6928-01 12 53412695 53412695 C A EIF4B Missense_Mutation p.R89S 0.14 deleterious(0.01) benign(0.353) TCGA-D5-6928-01 12 53449431 53449431 G T TENC1 Missense_Mutation p.W228L 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-D5-6928-01 12 53677910 53677910 C T ESPL1 Missense_Mutation p.S1049L 0.17 tolerated(0.68) benign(0.018) TCGA-D5-6928-01 12 54333260 54333260 C T HOXC13 Silent p.D190D 0.24 TCGA-D5-6928-01 12 54812882 54812882 G A ITGA5 Missense_Mutation p.P34L 0.25 tolerated(0.69) benign(0) TCGA-D5-6928-01 12 55846472 55846472 A C OR6C2 Missense_Mutation p.S159R 0.11 tolerated_low_confidence(0.12) possibly_damaging(0.754) TCGA-D5-6928-01 12 56221278 56221278 G A DNAJC14 Missense_Mutation p.R389W 0.14 tolerated(0.25) benign(0.001) TCGA-D5-6928-01 12 56320947 56320947 C T WIBG Intron 0.15 TCGA-D5-6928-01 12 56332316 56332316 C T DGKA Missense_Mutation p.T124M 0.30 tolerated(0.06) benign(0.002) TCGA-D5-6928-01 12 56355492 56355492 C A PMEL Missense_Mutation p.G34V 0.13 deleterious(0) probably_damaging(0.927) TCGA-D5-6928-01 12 56493771 56493771 C A ERBB3 Silent p.S1029S 0.13 TCGA-D5-6928-01 12 56619271 56619271 G A NABP2 Missense_Mutation p.G65E 0.26 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 12 56626635 56626635 G T SLC39A5 Missense_Mutation p.L150F 0.13 tolerated(0.06) possibly_damaging(0.642) TCGA-D5-6928-01 12 569686 569686 G A B4GALNT3 Silent p.Q48Q 0.11 TCGA-D5-6928-01 12 56982752 56982752 G A RBMS2 Missense_Mutation p.A394T 0.14 tolerated_low_confidence(1) benign(0) TCGA-D5-6928-01 12 57106577 57106577 G A NACA Missense_Mutation p.A919V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-D5-6928-01 12 57548032 57548032 T C LRP1 Missense_Mutation p.Y295H 0.09 probably_damaging(0.959) TCGA-D5-6928-01 12 57594864 57594864 C T LRP1 Missense_Mutation p.R3425C 0.27 probably_damaging(0.999) TCGA-D5-6928-01 12 57637919 57637919 G T STAC3 Silent p.S316S 0.17 TCGA-D5-6928-01 12 57843608 57843608 C T INHBC Missense_Mutation p.P288S 0.24 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 12 57849915 57849915 C T INHBE Silent p.L113L 0.21 TCGA-D5-6928-01 12 57919467 57919467 C T MBD6 Missense_Mutation p.P239L 0.10 deleterious_low_confidence(0) unknown(0) TCGA-D5-6928-01 12 58160831 58160831 G A CYP27B1 5'UTR 0.13 TCGA-D5-6928-01 12 60169120 60169120 C T SLC16A7 Silent p.G348G 0.26 TCGA-D5-6928-01 12 62148708 62148708 G T FAM19A2 Silent p.S68S 0.25 TCGA-D5-6928-01 12 63195674 63195674 G - PPM1H Frame_Shift_Del p.T227Hfs*30 0.09 TCGA-D5-6928-01 12 63544125 63544125 C T AVPR1A Silent p.A164A 0.16 TCGA-D5-6928-01 12 65137015 65137015 G A GNS Missense_Mutation p.A233V 0.14 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 12 6575405 6575405 C T VAMP1 Missense_Mutation p.A39T 0.08 deleterious(0.02) benign(0.261) TCGA-D5-6928-01 12 66522686 66522686 T - LLPH Frame_Shift_Del p.D68Mfs*6 0.10 TCGA-D5-6928-01 12 6659893 6659893 C T IFFO1 Missense_Mutation p.E300K 0.36 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 12 6711546 6711546 T - CHD4 Frame_Shift_Del p.K73Rfs*129 0.12 TCGA-D5-6928-01 12 69250159 69250159 C T CPM 3'UTR 0.12 TCGA-D5-6928-01 12 70078262 70078262 G C BEST3 Intron 0.10 TCGA-D5-6928-01 12 7045378 7045379 - C ATN1 Frame_Shift_Ins p.G319Wfs*61 0.19 TCGA-D5-6928-01 12 7045628 7045628 C T ATN1 Missense_Mutation p.P400S 0.22 probably_damaging(0.992) TCGA-D5-6928-01 12 7051003 7051003 C - ATN1 3'UTR 0.17 TCGA-D5-6928-01 12 7064537 7064537 G A PTPN6 Silent p.P212P 0.21 TCGA-D5-6928-01 12 70918314 70918314 G A PTPRB Missense_Mutation p.R2188W 0.12 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 12 72014073 72014073 A G ZFC3H1 Silent p.D1589D 0.15 TCGA-D5-6928-01 12 7241438 7241438 C T C1R Missense_Mutation p.E304K 0.31 deleterious(0.03) benign(0.287) TCGA-D5-6928-01 12 76425012 76425012 C T PHLDA1 Silent p.K170K 0.28 TCGA-D5-6928-01 12 78583946 78583946 A - NAV3 Frame_Shift_Del p.T2060Qfs*22 0.11 TCGA-D5-6928-01 12 81007499 81007499 C T PTPRQ Nonsense_Mutation p.R1679* 0.11 TCGA-D5-6928-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.11 TCGA-D5-6928-01 12 89992944 89992944 G A ATP2B1 Missense_Mutation p.R1101W 0.11 deleterious(0.01) possibly_damaging(0.889) TCGA-D5-6928-01 12 91347620 91347620 C T CCER1 Silent p.A300A 0.20 TCGA-D5-6928-01 12 95656694 95656694 C A VEZT Silent p.R91R 0.25 TCGA-D5-6928-01 12 96063915 96063915 G A NTN4 Silent p.C506C 0.09 TCGA-D5-6928-01 12 98850750 98850750 G A SLC9A7P1 RNA 0.23 TCGA-D5-6928-01 12 98995219 98995219 C T SLC25A3 Silent p.D334D 0.27 TCGA-D5-6928-01 13 100517157 100517157 C T CLYBL Missense_Mutation p.A209V 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-D5-6928-01 13 103299676 103299676 C T TPP2 Silent p.G870G 0.17 TCGA-D5-6928-01 13 103387905 103387906 - T CCDC168 Frame_Shift_Ins p.L419Ifs*6 0.13 TCGA-D5-6928-01 13 103703634 103703634 G A SLC10A2 Missense_Mutation p.A245V 0.17 deleterious(0.01) possibly_damaging(0.707) TCGA-D5-6928-01 13 111138141 111138141 C - COL4A2 Frame_Shift_Del p.P1057Lfs*10 0.17 TCGA-D5-6928-01 13 111287911 111287911 G A CARKD Missense_Mutation p.D250N 0.18 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 13 113170825 113170825 C T TUBGCP3 Missense_Mutation p.R672Q 0.19 deleterious(0) probably_damaging(0.98) TCGA-D5-6928-01 13 20601442 20601442 G A ZMYM2 Missense_Mutation p.C612Y 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6928-01 13 20797215 20797215 C T GJB6 Silent p.T135T 0.13 TCGA-D5-6928-01 13 21190019 21190019 G A IFT88 Splice_Site p.X409_splice 0.24 TCGA-D5-6928-01 13 23907441 23907441 A G SACS Missense_Mutation p.L3525S 0.16 probably_damaging(0.995) TCGA-D5-6928-01 13 25356068 25356068 T - RNF17 Frame_Shift_Del p.F201Lfs*23 0.17 TCGA-D5-6928-01 13 25670871 25670871 C T PABPC3 Nonsense_Mutation p.R179* 0.18 TCGA-D5-6928-01 13 28519355 28519355 G A ATP5EP2 5'UTR 0.11 TCGA-D5-6928-01 13 29933537 29933537 C T MTUS2 Missense_Mutation p.A1025V 0.08 tolerated(0.78) benign(0) TCGA-D5-6928-01 13 30110105 30110105 G A SLC7A1 Missense_Mutation p.A74V 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 13 31891796 31891796 C T B3GALTL Silent p.G386G 0.11 TCGA-D5-6928-01 13 32885752 32885752 T C ZAR1L Missense_Mutation p.Q104R 0.11 deleterious(0) possibly_damaging(0.798) TCGA-D5-6928-01 13 33703795 33703795 C T STARD13 Missense_Mutation p.S340N 0.18 tolerated(0.12) benign(0.005) TCGA-D5-6928-01 13 36026233 36026233 G A NBEA Silent p.T2103T 0.21 TCGA-D5-6928-01 13 36700119 36700119 G A DCLK1 Silent p.S52S 0.15 TCGA-D5-6928-01 13 37006866 37006866 G A CCNA1 Silent p.Q36Q 0.17 TCGA-D5-6928-01 13 37453545 37453545 G A SMAD9 Silent p.R94R 0.17 TCGA-D5-6928-01 13 37679556 37679556 C T CSNK1A1L 5'UTR 0.19 TCGA-D5-6928-01 13 37679663 37679663 G A CSNK1A1L 5'UTR 0.29 TCGA-D5-6928-01 13 39587996 39587996 T C PROSER1 Missense_Mutation p.N465D 0.18 tolerated_low_confidence(0.37) benign(0.004) TCGA-D5-6928-01 13 42769086 42769086 C A DGKH Missense_Mutation p.P701T 0.14 tolerated(0.57) benign(0.001) TCGA-D5-6928-01 13 45149229 45149229 C T TSC22D1 Missense_Mutation p.V328M 0.15 tolerated(0.13) probably_damaging(0.997) TCGA-D5-6928-01 13 45914427 45914427 A - TPT1 Intron 0.12 TCGA-D5-6928-01 13 46357672 46357672 C T SIAH3 Missense_Mutation p.R219Q 0.15 deleterious(0.02) benign(0.098) TCGA-D5-6928-01 13 50140831 50140831 T - RCBTB1 Frame_Shift_Del p.K67Sfs*2 0.09 TCGA-D5-6928-01 13 50588056 50588056 G A TRIM13 3'Flank 0.18 TCGA-D5-6928-01 13 52742308 52742308 G - MRPS31P5 RNA 0.14 TCGA-D5-6928-01 13 58299128 58299128 A C PCDH17 Missense_Mutation p.K1060N 0.12 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-D5-6928-01 13 60348330 60348330 A G DIAPH3 Silent p.C1104C 0.16 TCGA-D5-6928-01 13 61987617 61987617 G A PCDH20 Silent p.N205N 0.08 TCGA-D5-6928-01 13 61987884 61987884 A G PCDH20 Silent p.P116P 0.10 TCGA-D5-6928-01 13 76055428 76055428 A - TBC1D4 Frame_Shift_Del p.F159Sfs*16 0.16 TCGA-D5-6928-01 13 77671938 77671938 T C MYCBP2 Silent p.K3079K 0.22 TCGA-D5-6928-01 13 77750702 77750702 C T MYCBP2 Missense_Mutation p.G1763E 0.10 probably_damaging(0.973) TCGA-D5-6928-01 13 77817250 77817250 C T MYCBP2 Missense_Mutation p.R820Q 0.15 probably_damaging(0.95) TCGA-D5-6928-01 13 79191033 79191033 T A RNF219 Missense_Mutation p.D288V 0.12 tolerated(0.21) benign(0.003) TCGA-D5-6928-01 13 84455710 84455710 C G SLITRK1 5'UTR 0.15 TCGA-D5-6928-01 13 88328536 88328536 C T SLITRK5 Missense_Mutation p.T298M 0.15 tolerated(0.25) benign(0.043) TCGA-D5-6928-01 13 97999241 97999241 G A MBNL2 Missense_Mutation p.A242T 0.17 deleterious(0.04) probably_damaging(0.964) TCGA-D5-6928-01 13 99449718 99449718 G A DOCK9 Missense_Mutation p.A1995V 0.11 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 14 101347507 101347507 G - RTL1 Frame_Shift_Del p.Q1207Rfs*77 0.17 TCGA-D5-6928-01 14 101349723 101349723 C T RTL1 Missense_Mutation p.G468D 0.15 deleterious(0) probably_damaging(0.91) TCGA-D5-6928-01 14 101492355 101492355 G A MIR379 3'Flank 0.20 TCGA-D5-6928-01 14 102699092 102699092 C T MOK Intron 0.15 TCGA-D5-6928-01 14 103410483 103410483 T C CDC42BPB Missense_Mutation p.R1385G 0.18 deleterious(0.03) benign(0.277) TCGA-D5-6928-01 14 103569026 103569026 G A EXOC3L4 Silent p.Q322Q 0.20 TCGA-D5-6928-01 14 104001010 104001010 G A TRMT61A Missense_Mutation p.R241H 0.10 deleterious(0.04) possibly_damaging(0.479) TCGA-D5-6928-01 14 104121119 104121119 G A KLC1 Missense_Mutation p.R73Q 0.13 tolerated(0.32) benign(0.022) TCGA-D5-6928-01 14 104216204 104216204 C T PPP1R13B Missense_Mutation p.R299H 0.13 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 14 104642555 104642555 G - KIF26A Frame_Shift_Del p.G1145Afs*103 0.19 TCGA-D5-6928-01 14 105054102 105054103 - C C14orf180 Frame_Shift_Ins p.S46Lfs*39 0.11 TCGA-D5-6928-01 14 105361127 105361127 G A CEP170B Silent p.P1499P 0.25 TCGA-D5-6928-01 14 105408536 105408536 T C AHNAK2 Missense_Mutation p.T4418A 0.21 benign(0.054) TCGA-D5-6928-01 14 105611383 105611383 C T JAG2 Missense_Mutation p.A990T 0.12 tolerated(0.31) benign(0.016) TCGA-D5-6928-01 14 105643100 105643100 C T NUDT14 Missense_Mutation p.A67T 0.15 tolerated(0.38) benign(0.353) TCGA-D5-6928-01 14 20444015 20444015 G A OR4K15 Missense_Mutation p.R113H 0.11 tolerated(1) benign(0) TCGA-D5-6928-01 14 20444039 20444039 G A OR4K15 Missense_Mutation p.C121Y 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6928-01 14 20825912 20825912 C T PARP2 Missense_Mutation p.R570W 0.17 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 14 21359983 21359983 C - RNASE3 Frame_Shift_Del p.P48Lfs*31 0.17 TCGA-D5-6928-01 14 23354083 23354083 G T REM2 Missense_Mutation p.G102C 0.14 tolerated(0.05) probably_damaging(0.968) TCGA-D5-6928-01 14 23826477 23826477 C A EFS Missense_Mutation p.Q548H 0.15 tolerated(0.26) benign(0.101) TCGA-D5-6928-01 14 23844842 23844842 G T IL25 Missense_Mutation p.R96I 0.11 tolerated(0.13) probably_damaging(0.997) TCGA-D5-6928-01 14 23884312 23884312 C T MYH7 Silent p.A1817A 0.14 TCGA-D5-6928-01 14 24520181 24520181 C - LRRC16B 5'Flank 0.16 TCGA-D5-6928-01 14 24589026 24589026 G A DCAF11 Missense_Mutation p.R338H 0.10 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 14 24592463 24592463 C T DCAF11 Missense_Mutation p.A529V 0.22 tolerated_low_confidence(0.31) benign(0.014) TCGA-D5-6928-01 14 24610393 24610393 G T EMC9 Missense_Mutation p.L41M 0.18 deleterious(0.04) possibly_damaging(0.87) TCGA-D5-6928-01 14 24626802 24626802 C T RNF31 Silent p.R894R 0.13 TCGA-D5-6928-01 14 24760183 24760183 T C DHRS1 Missense_Mutation p.Y275C 0.23 deleterious(0.02) possibly_damaging(0.848) TCGA-D5-6928-01 14 24843600 24843600 G T NFATC4 Missense_Mutation p.G664C 0.11 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 14 25043947 25043947 C T CTSG Silent p.A91A 0.16 TCGA-D5-6928-01 14 29236969 29236969 G T FOXG1 Missense_Mutation p.G162C 0.33 deleterious(0) unknown(0) TCGA-D5-6928-01 14 29261284 29261284 A T C14orf23 Silent p.P107P 0.08 TCGA-D5-6928-01 14 31071227 31071227 A C G2E3 Missense_Mutation p.K300N 0.22 deleterious(0.02) possibly_damaging(0.776) TCGA-D5-6928-01 14 36004463 36004463 G A INSM2 Silent p.S335S 0.18 TCGA-D5-6928-01 14 36989292 36989292 C T NKX2-1 Missense_Mutation p.A15T 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.695) TCGA-D5-6928-01 14 38724420 38724420 C T CLEC14A Missense_Mutation p.A270T 0.11 tolerated(0.35) benign(0.046) TCGA-D5-6928-01 14 39556169 39556169 C T SEC23A Missense_Mutation p.R216H 0.16 tolerated(0.37) benign(0.029) TCGA-D5-6928-01 14 39645732 39645732 C T PNN Missense_Mutation p.R63C 0.20 deleterious(0) probably_damaging(0.984) TCGA-D5-6928-01 14 39868943 39868943 C G FBXO33 Missense_Mutation p.G482A 0.10 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 14 50269439 50269439 T - NEMF Frame_Shift_Del p.K641Rfs*9 0.14 TCGA-D5-6928-01 14 51089901 51089901 G A ATL1 Missense_Mutation p.A352T 0.16 deleterious(0.01) possibly_damaging(0.815) TCGA-D5-6928-01 14 51099058 51099058 T C ATL1 3'UTR 0.14 TCGA-D5-6928-01 14 51448629 51448629 G A TRIM9 Missense_Mutation p.A599V 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 14 51561212 51561212 C T TRIM9 Missense_Mutation p.R149H 0.13 deleterious(0) probably_damaging(0.943) TCGA-D5-6928-01 14 52481102 52481102 G A NID2 Missense_Mutation p.T1108I 0.15 tolerated(0.08) probably_damaging(0.93) TCGA-D5-6928-01 14 53325067 53325067 G A FERMT2 3'UTR 0.14 TCGA-D5-6928-01 14 54896986 54896986 G T CNIH1 Missense_Mutation p.L134I 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-D5-6928-01 14 55516051 55516051 T G SOCS4 3'UTR 0.14 TCGA-D5-6928-01 14 55852688 55852688 T - ATG14 Frame_Shift_Del p.K179Rfs*5 0.17 TCGA-D5-6928-01 14 57052612 57052612 T - TMEM260 Frame_Shift_Del p.F111Sfs*25 0.14 TCGA-D5-6928-01 14 57268418 57268419 - A OTX2 3'UTR 0.17 TCGA-D5-6928-01 14 57947451 57947451 T C C14orf105 Missense_Mutation p.S173G 0.20 tolerated(0.08) benign(0.407) TCGA-D5-6928-01 14 58825910 58825911 - A ARID4A Frame_Shift_Ins p.Q641Tfs*6 0.12 TCGA-D5-6928-01 14 59930963 59930963 G A GPR135 Missense_Mutation p.R328C 0.18 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 14 60074106 60074106 C T RTN1 Missense_Mutation p.V624M 0.14 deleterious(0.01) probably_damaging(0.915) TCGA-D5-6928-01 14 62203713 62203713 G A HIF1A Missense_Mutation p.E403K 0.15 tolerated(0.66) benign(0.005) TCGA-D5-6928-01 14 64461922 64461922 T C SYNE2 Splice_Site p.X980_splice 0.15 TCGA-D5-6928-01 14 65008524 65008524 G A HSPA2 Silent p.P319P 0.15 TCGA-D5-6928-01 14 68050509 68050509 T C PLEKHH1 Missense_Mutation p.S1160P 0.18 tolerated(1) benign(0.002) TCGA-D5-6928-01 14 68215236 68215236 C - ZFYVE26 Frame_Shift_Del p.D2513Mfs*3 0.24 TCGA-D5-6928-01 14 70633480 70633480 G A SLC8A3 Missense_Mutation p.R554W 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 14 70713772 70713772 G A ADAM21P1 RNA 0.10 TCGA-D5-6928-01 14 70925420 70925420 G A ADAM21 Missense_Mutation p.E402K 0.15 tolerated(0.56) benign(0.001) TCGA-D5-6928-01 14 73572649 73572649 C T RBM25 Nonsense_Mutation p.R413* 0.11 TCGA-D5-6928-01 14 74428052 74428052 C T COQ6 Silent p.Y356Y 0.14 TCGA-D5-6928-01 14 75558051 75558051 C A NEK9 Missense_Mutation p.M788I 0.09 tolerated_low_confidence(0.52) benign(0.001) TCGA-D5-6928-01 14 75602544 75602544 G A TMED10 Missense_Mutation p.R153C 0.25 tolerated(0.06) benign(0.219) TCGA-D5-6928-01 14 76438030 76438030 G A TGFB3 Silent p.T128T 0.12 TCGA-D5-6928-01 14 76965149 76965149 G T ESRRB Intron 0.20 TCGA-D5-6928-01 14 76965204 76965204 G T ESRRB Intron 0.21 TCGA-D5-6928-01 14 77605989 77605989 C T ZDHHC22 Silent p.L31L 0.17 TCGA-D5-6928-01 14 78023436 78023436 G A SPTLC2 Missense_Mutation p.R302W 0.16 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 14 78365561 78365561 A G ADCK1 Missense_Mutation p.E234G 0.13 deleterious(0) probably_damaging(0.976) TCGA-D5-6928-01 14 81304568 81304568 G A CEP128 Nonsense_Mutation p.R302* 0.12 TCGA-D5-6928-01 14 81646522 81646522 T - GTF2A1 3'UTR 0.28 TCGA-D5-6928-01 14 88729567 88729567 C A KCNK10 Missense_Mutation p.Q127H 0.14 tolerated(0.15) benign(0.235) TCGA-D5-6928-01 14 91739478 91739478 G A CCDC88C Missense_Mutation p.R1860W 0.14 deleterious(0.02) probably_damaging(0.953) TCGA-D5-6928-01 14 92549562 92549562 G A ATXN3 Silent p.C172C 0.19 TCGA-D5-6928-01 14 93963615 93963615 G - UNC79 Frame_Shift_Del p.L119Cfs*25 0.22 TCGA-D5-6928-01 14 94007058 94007058 C T UNC79 Missense_Mutation p.R292W 0.27 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 14 94245566 94245566 G A PRIMA1 Missense_Mutation p.P62L 0.17 tolerated(0.06) benign(0.048) TCGA-D5-6928-01 14 95235525 95235525 A G GSC Missense_Mutation p.S129P 0.12 tolerated(0.06) benign(0.012) TCGA-D5-6928-01 14 95562408 95562408 G T DICER1 Missense_Mutation p.L1617I 0.23 tolerated(0.44) benign(0.024) TCGA-D5-6928-01 14 95572542 95572542 C T DICER1 Silent p.Q941Q 0.22 TCGA-D5-6928-01 15 101152537 101152537 C - ASB7 Frame_Shift_Del p.P40Rfs*28 0.18 TCGA-D5-6928-01 15 102224308 102224308 G A TARSL2 Silent p.D540D 0.15 TCGA-D5-6928-01 15 24925574 24925574 T - NPAP1 3'UTR 0.12 TCGA-D5-6928-01 15 25650633 25650633 A G UBE3A Missense_Mutation p.S16P 0.11 tolerated_low_confidence(0.15) benign(0) TCGA-D5-6928-01 15 25962001 25962001 G A ATP10A Missense_Mutation p.A551V 0.22 tolerated(0.51) benign(0.028) TCGA-D5-6928-01 15 27160003 27160003 C T GABRA5 Missense_Mutation p.A184V 0.15 tolerated(0.33) possibly_damaging(0.474) TCGA-D5-6928-01 15 28277245 28277245 T C OCA2 Missense_Mutation p.T98A 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.521) TCGA-D5-6928-01 15 28386877 28386877 C A HERC2 Missense_Mutation p.R3939M 0.11 probably_damaging(0.995) TCGA-D5-6928-01 15 29993883 29993883 T G TJP1 Missense_Mutation p.K1721N 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 15 33878215 33878215 G A RYR3 Silent p.L562L 0.16 TCGA-D5-6928-01 15 34395495 34395495 C T PGBD4 Silent p.L255L 0.19 TCGA-D5-6928-01 15 37242564 37242564 G A MEIS2 Missense_Mutation p.A313V 0.14 deleterious(0.01) possibly_damaging(0.879) TCGA-D5-6928-01 15 39882160 39882160 A G THBS1 Missense_Mutation p.D694G 0.24 deleterious(0) probably_damaging(0.986) TCGA-D5-6928-01 15 39885308 39885308 C T THBS1 Nonsense_Mutation p.R959* 0.15 TCGA-D5-6928-01 15 40661628 40661628 C A DISP2 Missense_Mutation p.F1105L 0.17 tolerated(0.05) possibly_damaging(0.686) TCGA-D5-6928-01 15 41800389 41800389 C A LTK Missense_Mutation p.R376L 0.09 deleterious_low_confidence(0) benign(0.195) TCGA-D5-6928-01 15 41983813 41983813 G A MGA Intron 0.11 TCGA-D5-6928-01 15 42749423 42749425 TTA - ZNF106 5'UTR 0.14 TCGA-D5-6928-01 15 43329999 43329999 C T UBR1 Missense_Mutation p.R665Q 0.09 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 15 43690358 43690358 A G TUBGCP4 Missense_Mutation p.T467A 0.11 deleterious(0.01) possibly_damaging(0.729) TCGA-D5-6928-01 15 45567724 45567724 T C SLC28A2 3'UTR 0.08 TCGA-D5-6928-01 15 45814315 45814315 C T SLC30A4 Missense_Mutation p.D80N 0.15 tolerated(0.07) benign(0.138) TCGA-D5-6928-01 15 48426724 48426724 C T SLC24A5 Silent p.L160L 0.14 TCGA-D5-6928-01 15 48720587 48720587 C T FBN1 Missense_Mutation p.C2318Y 0.13 probably_damaging(0.999) TCGA-D5-6928-01 15 50901776 50901776 A G TRPM7 Splice_Site p.X860_splice 0.13 TCGA-D5-6928-01 15 51809289 51809289 C T DMXL2 Missense_Mutation p.A838T 0.09 tolerated(0.09) possibly_damaging(0.462) TCGA-D5-6928-01 15 56535348 56535348 G T RFX7 Missense_Mutation p.Q46K 0.18 tolerated(0.11) probably_damaging(0.932) TCGA-D5-6928-01 15 58357797 58357797 C T ALDH1A2 Missense_Mutation p.A18T 0.15 tolerated_low_confidence(0.13) probably_damaging(0.988) TCGA-D5-6928-01 15 59406974 59406974 C T CCNB2 Missense_Mutation p.R166C 0.17 deleterious(0) probably_damaging(0.986) TCGA-D5-6928-01 15 59470679 59470679 G A MYO1E Silent p.G654G 0.20 TCGA-D5-6928-01 15 59499212 59499212 G A LDHAL6B Missense_Mutation p.G25R 0.23 tolerated_low_confidence(0.22) benign(0.002) TCGA-D5-6928-01 15 62362763 62362763 A G C2CD4A 3'UTR 0.12 TCGA-D5-6928-01 15 63966555 63966555 C A HERC1 Missense_Mutation p.G2611V 0.24 benign(0.046) TCGA-D5-6928-01 15 67495121 67495121 G A AAGAB 3'UTR 0.10 TCGA-D5-6928-01 15 71256161 71256161 C A LRRC49 Missense_Mutation p.L276I 0.17 tolerated(0.11) benign(0.437) TCGA-D5-6928-01 15 71302168 71302168 A C LRRC49 Missense_Mutation p.N482T 0.17 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 15 72050352 72050352 A G THSD4 Missense_Mutation p.T843A 0.14 tolerated(0.08) benign(0.016) TCGA-D5-6928-01 15 73614943 73614943 G - HCN4 Frame_Shift_Del p.P1164Lfs*17 0.16 TCGA-D5-6928-01 15 73615963 73615963 C A HCN4 Missense_Mutation p.R824M 0.09 deleterious(0.01) unknown(0) TCGA-D5-6928-01 15 73616241 73616241 G A HCN4 Silent p.S731S 0.09 TCGA-D5-6928-01 15 74328425 74328425 C T PML Intron 0.20 TCGA-D5-6928-01 15 74336611 74336611 C T PML Silent p.R637R 0.12 TCGA-D5-6928-01 15 74429079 74429079 C - ISLR2 3'UTR 0.20 TCGA-D5-6928-01 15 75115045 75115045 G A LMAN1L Silent p.E398E 0.25 TCGA-D5-6928-01 15 75311374 75311374 C A SCAMP5 3'UTR 0.29 TCGA-D5-6928-01 15 75632359 75632359 T G COMMD4 3'UTR 0.23 TCGA-D5-6928-01 15 75980762 75980762 A C CSPG4 Missense_Mutation p.Y882D 0.12 deleterious(0.02) benign(0.028) TCGA-D5-6928-01 15 78317678 78317678 C T TBC1D2B Missense_Mutation p.A337T 0.16 tolerated(0.27) benign(0.002) TCGA-D5-6928-01 15 78894483 78894483 C T CHRNA3 Silent p.P167P 0.20 TCGA-D5-6928-01 15 82336763 82336763 C T MEX3B Missense_Mutation p.A150T 0.21 tolerated(0.61) benign(0.004) TCGA-D5-6928-01 15 83345251 83345251 T C AP3B2 Missense_Mutation p.N543D 0.11 deleterious(0) possibly_damaging(0.688) TCGA-D5-6928-01 15 85634360 85634360 A - PDE8A Frame_Shift_Del p.K269Rfs*8 0.11 TCGA-D5-6928-01 15 89761911 89761911 C T RLBP1 Missense_Mutation p.R9H 0.17 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 15 89790891 89790892 - T FANCI Frame_Shift_Ins p.L6Ffs*23 0.14 TCGA-D5-6928-01 15 90152168 90152170 AAG - TICRR In_Frame_Del p.K954del 0.14 TCGA-D5-6928-01 15 90174775 90174775 C T KIF7 Missense_Mutation p.R1021H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6928-01 15 90195944 90195944 G A KIF7 Missense_Mutation p.A73V 0.12 tolerated(0.22) possibly_damaging(0.771) TCGA-D5-6928-01 15 90793866 90793866 G T TTLL13 Nonsense_Mutation p.E2* 0.08 TCGA-D5-6928-01 15 91491072 91491072 A G UNC45A Missense_Mutation p.K516R 0.09 tolerated(0.91) benign(0.04) TCGA-D5-6928-01 15 91522412 91522412 G T PRC1 Silent p.T361T 0.16 TCGA-D5-6928-01 16 10274273 10274273 G A GRIN2A 5'UTR 0.17 TCGA-D5-6928-01 16 11154758 11154758 G T CLEC16A Splice_Site p.X666_splice 0.10 TCGA-D5-6928-01 16 11369671 11369671 T C PRM2 3'UTR 0.16 TCGA-D5-6928-01 16 11772770 11772770 G A SNN 3'UTR 0.18 TCGA-D5-6928-01 16 11829948 11829948 G T TXNDC11 Missense_Mutation p.F132L 0.09 deleterious(0.01) possibly_damaging(0.557) TCGA-D5-6928-01 16 1292322 1292322 C T TPSAB1 3'UTR 0.12 TCGA-D5-6928-01 16 1453264 1453264 G A UNKL Silent p.H123H 0.12 TCGA-D5-6928-01 16 15026947 15026947 G A NPIPA1 5'Flank 0.11 TCGA-D5-6928-01 16 1878745 1878745 A - FAHD1 Intron 0.19 TCGA-D5-6928-01 16 20084944 20084944 C T GPR139 5'UTR 0.18 TCGA-D5-6928-01 16 20334246 20334246 G A GP2 Silent p.C200C 0.08 TCGA-D5-6928-01 16 20355366 20355366 G A UMOD Silent p.T437T 0.17 TCGA-D5-6928-01 16 20781459 20781459 G A ACSM3 Missense_Mutation p.A35T 0.20 tolerated(0.21) benign(0.021) TCGA-D5-6928-01 16 21222852 21222852 C A ZP2 Missense_Mutation p.R6I 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.59) TCGA-D5-6928-01 16 2140405 2140405 G A PKD1 Missense_Mutation p.R4109C 0.21 probably_damaging(0.93) TCGA-D5-6928-01 16 2161106 2161106 C T PKD1 Silent p.T1354T 0.26 TCGA-D5-6928-01 16 2223484 2223484 G A TRAF7 Missense_Mutation p.V339I 0.13 tolerated(0.15) benign(0.029) TCGA-D5-6928-01 16 23080123 23080123 C T USP31 Silent p.P1101P 0.24 TCGA-D5-6928-01 16 2338037 2338037 G A ABCA3 Silent p.R998R 0.25 TCGA-D5-6928-01 16 23540905 23540905 G T EARS2 Missense_Mutation p.L424M 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 16 2374485 2374485 C T ABCA3 Missense_Mutation p.D123N 0.27 tolerated(0.17) benign(0.022) TCGA-D5-6928-01 16 24802407 24802407 A G TNRC6A Missense_Mutation p.K815R 0.12 tolerated(0.18) benign(0.005) TCGA-D5-6928-01 16 24946941 24946941 G T ARHGAP17 Missense_Mutation p.P582T 0.20 tolerated_low_confidence(0.43) benign(0.002) TCGA-D5-6928-01 16 25255194 25255194 T G ZKSCAN2 Missense_Mutation p.E631D 0.14 tolerated(0.11) probably_damaging(0.917) TCGA-D5-6928-01 16 2577615 2577615 C T AMDHD2 Silent p.L138L 0.21 TCGA-D5-6928-01 16 2580325 2580325 C T AMDHD2 Silent p.C450C 0.12 TCGA-D5-6928-01 16 27232088 27232088 G T KDM8 3'UTR 0.13 TCGA-D5-6928-01 16 27500950 27500950 C T GTF3C1 Missense_Mutation p.R1089H 0.25 deleterious(0.01) possibly_damaging(0.875) TCGA-D5-6928-01 16 28508985 28508985 G - APOBR Frame_Shift_Del p.L877Ffs*2 0.25 TCGA-D5-6928-01 16 28913387 28913387 C T ATP2A1 Silent p.N768N 0.23 TCGA-D5-6928-01 16 29675882 29675882 G A SPN Missense_Mutation p.R278H 0.17 tolerated(0.08) probably_damaging(0.923) TCGA-D5-6928-01 16 29820923 29820923 C T MAZ Missense_Mutation p.R448W 0.11 deleterious(0) probably_damaging(0.942) TCGA-D5-6928-01 16 29912660 29912660 C T ASPHD1 Missense_Mutation p.S123L 0.16 tolerated(0.27) benign(0.013) TCGA-D5-6928-01 16 30103906 30103906 C T YPEL3 3'UTR 0.27 TCGA-D5-6928-01 16 30616697 30616697 G A ZNF689 Nonsense_Mutation p.R131* 0.13 TCGA-D5-6928-01 16 30903991 30903991 G - BCL7C Frame_Shift_Del p.Q120Sfs*33 0.24 TCGA-D5-6928-01 16 31089136 31089136 T A ZNF646 Nonsense_Mutation p.C497* 0.19 TCGA-D5-6928-01 16 3647914 3647914 G T SLX4 Missense_Mutation p.P417Q 0.26 tolerated(0.09) probably_damaging(0.994) TCGA-D5-6928-01 16 3714429 3714429 G A TRAP1 Missense_Mutation p.S472F 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6928-01 16 3724366 3724366 G A TRAP1 Missense_Mutation p.R340C 0.20 deleterious(0.02) possibly_damaging(0.545) TCGA-D5-6928-01 16 4455501 4455501 C T CORO7 Silent p.T185T 0.17 TCGA-D5-6928-01 16 4815648 4815648 C T ZNF500 Missense_Mutation p.R111H 0.11 tolerated(0.07) probably_damaging(0.995) TCGA-D5-6928-01 16 49670669 49670669 G A ZNF423 Silent p.C798C 0.17 TCGA-D5-6928-01 16 50134200 50134200 C T HEATR3 Silent p.V553V 0.12 TCGA-D5-6928-01 16 5075502 5075502 C T NAGPA Missense_Mutation p.A509T 0.25 benign(0.002) TCGA-D5-6928-01 16 51171396 51171396 C T SALL1 Missense_Mutation p.G1201D 0.20 deleterious(0.04) probably_damaging(0.976) TCGA-D5-6928-01 16 52473606 52473606 G A TOX3 Missense_Mutation p.T421M 0.19 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-D5-6928-01 16 52484197 52484197 C T TOX3 Missense_Mutation p.A224T 0.15 tolerated(0.56) benign(0.006) TCGA-D5-6928-01 16 55360338 55360338 G A IRX6 Missense_Mutation p.A46T 0.11 tolerated(0.42) benign(0.003) TCGA-D5-6928-01 16 55513469 55513471 CGC - MMP2 In_Frame_Del p.A30del 0.19 TCGA-D5-6928-01 16 55736292 55736292 C T SLC6A2 Intron 0.10 TCGA-D5-6928-01 16 56667311 56667311 A G MT1M Missense_Mutation p.K30E 0.14 deleterious(0.01) possibly_damaging(0.621) TCGA-D5-6928-01 16 57722408 57722408 G A GPR97 3'UTR 0.23 TCGA-D5-6928-01 16 57996762 57996762 G A CNGB1 Silent p.G132G 0.18 TCGA-D5-6928-01 16 58079302 58079302 G A MMP15 Silent p.A654A 0.10 TCGA-D5-6928-01 16 58620473 58620473 C T CNOT1 Missense_Mutation p.A205T 0.15 tolerated(0.46) benign(0.004) TCGA-D5-6928-01 16 613758 613758 G A C16orf11 Missense_Mutation p.S155N 0.29 tolerated(0.28) benign(0.031) TCGA-D5-6928-01 16 66973189 66973189 C T CES2 Silent p.D181D 0.10 TCGA-D5-6928-01 16 67179310 67179310 G A C16orf70 Silent p.T346T 0.18 TCGA-D5-6928-01 16 67261830 67261830 C T TMEM208 Missense_Mutation p.A33V 0.15 tolerated(0.15) possibly_damaging(0.705) TCGA-D5-6928-01 16 67272815 67272815 C T FHOD1 Missense_Mutation p.A122T 0.21 tolerated(0.12) benign(0.004) TCGA-D5-6928-01 16 67405116 67405116 C A LRRC36 Missense_Mutation p.H489N 0.15 tolerated_low_confidence(0.17) benign(0.139) TCGA-D5-6928-01 16 67472920 67472920 C T ATP6V0D1 Missense_Mutation p.R257Q 0.13 tolerated(0.34) benign(0.305) TCGA-D5-6928-01 16 67472977 67472977 G A ATP6V0D1 Missense_Mutation p.A238V 0.20 tolerated(0.27) benign(0.033) TCGA-D5-6928-01 16 67679975 67679975 C - RLTPR Frame_Shift_Del p.P82Lfs*127 0.10 TCGA-D5-6928-01 16 67760462 67760462 C A RANBP10 Splice_Site p.X578_splice 0.24 TCGA-D5-6928-01 16 67913316 67913316 G A EDC4 Missense_Mutation p.A515T 0.14 deleterious(0) possibly_damaging(0.687) TCGA-D5-6928-01 16 67977933 67977933 G - LCAT Frame_Shift_Del p.F25Sfs*36 0.19 TCGA-D5-6928-01 16 68835672 68835672 C A CDH1 Missense_Mutation p.P88H 0.18 tolerated(0.16) benign(0.068) TCGA-D5-6928-01 16 70176193 70176193 C T PDPR Missense_Mutation p.R458C 0.10 deleterious(0) probably_damaging(0.939) TCGA-D5-6928-01 16 70176194 70176194 G A PDPR Missense_Mutation p.R458H 0.09 deleterious(0) benign(0.243) TCGA-D5-6928-01 16 70211236 70211236 C A CLEC18C Silent p.T103T 0.06 TCGA-D5-6928-01 16 70287885 70287886 GA - AARS Frame_Shift_Del p.L819Qfs*9 0.10 TCGA-D5-6928-01 16 70400156 70400156 G A DDX19A Missense_Mutation p.R258H 0.13 tolerated(0.06) benign(0.002) TCGA-D5-6928-01 16 72055100 72055100 C T DHODH Missense_Mutation p.R199C 0.20 deleterious(0) possibly_damaging(0.907) TCGA-D5-6928-01 16 72133755 72133755 G A DHX38 Missense_Mutation p.R362H 0.25 deleterious(0.03) probably_damaging(0.95) TCGA-D5-6928-01 16 72829759 72829759 T A ZFHX3 Missense_Mutation p.Q2274H 0.15 probably_damaging(0.994) TCGA-D5-6928-01 16 74394656 74394656 C T RP11-252A24.2 RNA 0.07 TCGA-D5-6928-01 16 75127551 75127551 G A ZNRF1 Missense_Mutation p.R169H 0.12 deleterious(0) benign(0.111) TCGA-D5-6928-01 16 78198170 78198170 G A WWOX Missense_Mutation p.R167H 0.13 tolerated(0.13) benign(0.023) TCGA-D5-6928-01 16 79632703 79632703 G A MAF Missense_Mutation p.P366L 0.12 deleterious(0) possibly_damaging(0.901) TCGA-D5-6928-01 16 81388061 81388061 C T GAN Silent p.L112L 0.17 TCGA-D5-6928-01 16 830561 830561 G A MSLNL Missense_Mutation p.P147L 0.19 benign(0.026) TCGA-D5-6928-01 16 84203752 84203752 G T DNAAF1 Missense_Mutation p.G440W 0.16 deleterious(0) possibly_damaging(0.823) TCGA-D5-6928-01 16 84214674 84214674 G - TAF1C Frame_Shift_Del p.P454Lfs*14 0.27 TCGA-D5-6928-01 16 842546 842546 G - CHTF18 Frame_Shift_Del p.L481Sfs*3 0.28 TCGA-D5-6928-01 16 84444174 84444174 G A ATP2C2 Missense_Mutation p.A140T 0.16 deleterious(0) possibly_damaging(0.648) TCGA-D5-6928-01 16 84520395 84520395 C T TLDC1 Missense_Mutation p.C267Y 0.11 deleterious(0) benign(0) TCGA-D5-6928-01 16 847875 847875 G A CHTF18 Missense_Mutation p.R943H 0.18 tolerated(0.25) benign(0.007) TCGA-D5-6928-01 16 85144021 85144021 C A FAM92B Missense_Mutation p.E22D 0.15 deleterious(0.04) possibly_damaging(0.666) TCGA-D5-6928-01 16 85667582 85667582 G A GSE1 Missense_Mutation p.A24T 0.12 deleterious(0) unknown(0) TCGA-D5-6928-01 16 87723398 87723398 C T JPH3 Nonsense_Mutation p.Q478* 0.30 TCGA-D5-6928-01 16 87925487 87925487 G A CA5A Missense_Mutation p.A231V 0.18 deleterious(0.05) benign(0.23) TCGA-D5-6928-01 16 88066773 88066773 G A BANP Silent p.P366P 0.17 TCGA-D5-6928-01 16 88496419 88496419 G A ZNF469 Silent p.A847A 0.20 TCGA-D5-6928-01 16 88802743 88802743 C T PIEZO1 Missense_Mutation p.R457H 0.13 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 16 89346752 89346754 GAA - ANKRD11 In_Frame_Del p.F2066del 0.29 TCGA-D5-6928-01 16 89807159 89807159 C A ZNF276 3'Flank 0.17 TCGA-D5-6928-01 16 90072891 90072891 G A DBNDD1 Missense_Mutation p.P130L 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 17 10214520 10214520 T C MYH13 Missense_Mutation p.Q1519R 0.15 deleterious(0.01) benign(0.378) TCGA-D5-6928-01 17 10223698 10223698 T C MYH13 Missense_Mutation p.D1076G 0.18 deleterious(0.02) benign(0.19) TCGA-D5-6928-01 17 11783394 11783394 G A DNAH9 Splice_Site p.X3493_splice 0.11 TCGA-D5-6928-01 17 12647716 12647716 C T MYOCD Nonsense_Mutation p.R312* 0.17 TCGA-D5-6928-01 17 12893480 12893480 G A ARHGAP44 Missense_Mutation p.A817T 0.28 tolerated_low_confidence(0.21) benign(0.005) TCGA-D5-6928-01 17 12896082 12896082 C T ELAC2 3'UTR 0.15 TCGA-D5-6928-01 17 1374557 1374557 G A MYO1C Nonsense_Mutation p.R699* 0.16 TCGA-D5-6928-01 17 1386205 1386205 G A MYO1C Missense_Mutation p.R166C 0.17 deleterious(0.03) possibly_damaging(0.873) TCGA-D5-6928-01 17 15950396 15950396 C T NCOR1 Missense_Mutation p.R2183H 0.16 probably_damaging(0.996) TCGA-D5-6928-01 17 15989675 15989675 G A NCOR1 Missense_Mutation p.P1033L 0.15 probably_damaging(0.999) TCGA-D5-6928-01 17 16725659 16725659 G T AC022596.6 RNA 0.11 TCGA-D5-6928-01 17 16734874 16734874 C T KRT16P2 RNA 0.11 TCGA-D5-6928-01 17 1690764 1690764 G A SMYD4 Missense_Mutation p.R558W 0.14 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 17 17701375 17701375 C A RAI1 Missense_Mutation p.P1705T 0.10 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 17 17720635 17720635 C A SREBF1 Missense_Mutation p.S544I 0.13 deleterious(0.03) benign(0.272) TCGA-D5-6928-01 17 17721595 17721595 G A SREBF1 Missense_Mutation p.R418C 0.12 deleterious(0) probably_damaging(0.977) TCGA-D5-6928-01 17 1798390 1798390 G A RPA1 Splice_Site p.X582_splice 0.13 TCGA-D5-6928-01 17 18154605 18154605 C T FLII Missense_Mutation p.E524K 0.22 deleterious(0.02) probably_damaging(0.987) TCGA-D5-6928-01 17 18219409 18219409 C A SMCR8 Silent p.S102S 0.09 TCGA-D5-6928-01 17 18250891 18250891 C A SHMT1 Silent p.G146G 0.19 TCGA-D5-6928-01 17 1946083 1946083 G A OVCA2 Silent p.A123A 0.16 TCGA-D5-6928-01 17 1968886 1968886 C T SMG6 Missense_Mutation p.R1308H 0.17 deleterious(0) probably_damaging(0.993) TCGA-D5-6928-01 17 21477599 21477599 C A AC138710.1 5'Flank 0.17 TCGA-D5-6928-01 17 21731464 21731464 C T UBBP4 Missense_Mutation p.A180V 0.15 tolerated(0.32) benign(0.024) TCGA-D5-6928-01 17 2290370 2290370 G T MNT Nonsense_Mutation p.S525* 0.16 TCGA-D5-6928-01 17 263194 263194 G A C17orf97 Missense_Mutation p.R187H 0.18 tolerated(0.08) probably_damaging(0.984) TCGA-D5-6928-01 17 26653775 26653775 C T TMEM97 Missense_Mutation p.R163W 0.19 tolerated(0.19) probably_damaging(1) TCGA-D5-6928-01 17 26694975 26694975 C T CTB-96E2.2 Missense_Mutation p.R20H 0.17 tolerated(0.35) benign(0.014) TCGA-D5-6928-01 17 27043061 27043061 C A RAB34 Missense_Mutation p.K111N 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6928-01 17 27086156 27086156 T C FAM222B Missense_Mutation p.Q274R 0.08 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 17 27869946 27869946 G A TAOK1 Missense_Mutation p.R971Q 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.638) TCGA-D5-6928-01 17 27889940 27889940 G A ABHD15 Missense_Mutation p.A349V 0.16 deleterious(0) probably_damaging(0.992) TCGA-D5-6928-01 17 27959040 27959040 C T SSH2 Missense_Mutation p.A1031T 0.15 tolerated_low_confidence(0.29) benign(0.003) TCGA-D5-6928-01 17 29326012 29326012 C A RNF135 Missense_Mutation p.L368I 0.11 tolerated(0.11) possibly_damaging(0.733) TCGA-D5-6928-01 17 30665254 30665254 A - C17orf75 Frame_Shift_Del p.L155* 0.18 TCGA-D5-6928-01 17 30814747 30814747 A C CDK5R1 Missense_Mutation p.K37Q 0.19 tolerated(0.42) possibly_damaging(0.575) TCGA-D5-6928-01 17 33679696 33679696 C T SLFN11 Silent p.T795T 0.11 TCGA-D5-6928-01 17 33849677 33849677 A G SLFN12L 5'UTR 0.24 TCGA-D5-6928-01 17 34171824 34171824 T C TAF15 Silent p.G507G 0.18 TCGA-D5-6928-01 17 34888461 34888461 T C MYO19 5'UTR 0.13 TCGA-D5-6928-01 17 3563840 3563840 G T CTNS Intron 0.19 TCGA-D5-6928-01 17 3629456 3629456 C T GSG2 Missense_Mutation p.L743F 0.12 tolerated(0.06) probably_damaging(0.963) TCGA-D5-6928-01 17 36365173 36365173 G A RP11-1407O15.2 Missense_Mutation p.T141M 0.04 TCGA-D5-6928-01 17 36486922 36486922 C A GPR179 Missense_Mutation p.A844S 0.15 tolerated(0.06) benign(0.173) TCGA-D5-6928-01 17 37672019 37672019 T - CDK12 Frame_Shift_Del p.Q937Kfs*9 0.18 TCGA-D5-6928-01 17 3786360 3786360 G A CAMKK1 Silent p.H208H 0.19 TCGA-D5-6928-01 17 3850951 3850951 C A ATP2A3 Missense_Mutation p.G277C 0.11 deleterious(0) probably_damaging(0.935) TCGA-D5-6928-01 17 39553696 39553696 G T KRT31 Silent p.P32P 0.10 TCGA-D5-6928-01 17 39723730 39723730 C T KRT9 Missense_Mutation p.G556D 0.16 tolerated_low_confidence(0.14) unknown(0) TCGA-D5-6928-01 17 39978652 39978652 G T FKBP10 Nonsense_Mutation p.E581* 0.16 TCGA-D5-6928-01 17 40001448 40001448 G A KLHL10 Missense_Mutation p.S252N 0.12 tolerated(1) benign(0.001) TCGA-D5-6928-01 17 40705386 40705386 G T HSD17B1 Intron 0.13 TCGA-D5-6928-01 17 40933313 40933313 G T WNK4 Missense_Mutation p.E199D 0.09 deleterious(0) unknown(0) TCGA-D5-6928-01 17 40951109 40951109 A G CNTD1 Silent p.R8R 0.17 TCGA-D5-6928-01 17 42635260 42635260 C T FZD2 Silent p.D68D 0.14 TCGA-D5-6928-01 17 42882168 42882168 G A GJC1 Missense_Mutation p.R340W 0.16 deleterious(0) possibly_damaging(0.789) TCGA-D5-6928-01 17 43111641 43111641 G T DCAKD Missense_Mutation p.P77H 0.13 tolerated(0.15) probably_damaging(0.957) TCGA-D5-6928-01 17 43912048 43912048 C T CRHR1 Missense_Mutation p.A418V 0.15 tolerated(0.7) benign(0.009) TCGA-D5-6928-01 17 4446386 4446386 T C MYBBP1A Missense_Mutation p.E905G 0.08 deleterious(0.05) benign(0.006) TCGA-D5-6928-01 17 45664620 45664620 A - NPEPPS Frame_Shift_Del p.N337Ifs*37 0.09 TCGA-D5-6928-01 17 45895940 45895940 G A OSBPL7 Missense_Mutation p.R138C 0.13 tolerated(0.27) benign(0.007) TCGA-D5-6928-01 17 46607889 46607889 G T HOXB1 Silent p.G126G 0.22 TCGA-D5-6928-01 17 46628242 46628242 C A HOXB3 Missense_Mutation p.K250N 0.17 deleterious(0) benign(0.305) TCGA-D5-6928-01 17 47115716 47115716 C - IGF2BP1 Frame_Shift_Del p.L198Ffs*32 0.14 TCGA-D5-6928-01 17 47583911 47583911 G A NGFR Silent p.T153T 0.18 TCGA-D5-6928-01 17 4797297 4797297 C T MINK1 Missense_Mutation p.T860I 0.22 tolerated(0.08) possibly_damaging(0.806) TCGA-D5-6928-01 17 48543075 48543075 G T CHAD Missense_Mutation p.L311I 0.13 deleterious(0.02) probably_damaging(0.991) TCGA-D5-6928-01 17 48598790 48598790 C T MYCBPAP Silent p.Y425Y 0.15 TCGA-D5-6928-01 17 48629373 48629373 G A SPATA20 Missense_Mutation p.V597M 0.18 deleterious(0) probably_damaging(0.934) TCGA-D5-6928-01 17 48652951 48652951 G A CACNA1G Silent p.T396T 0.14 TCGA-D5-6928-01 17 49073974 49073974 G A SPAG9 Silent p.D640D 0.13 TCGA-D5-6928-01 17 49338213 49338213 T C UTP18 Missense_Mutation p.C90R 0.14 tolerated(0.45) benign(0.008) TCGA-D5-6928-01 17 53077121 53077122 TT - STXBP4 Frame_Shift_Del p.S141Ffs*4 0.14 TCGA-D5-6928-01 17 5347639 5347639 C T DHX33 Silent p.E670E 0.12 TCGA-D5-6928-01 17 56058047 56058047 G A VEZF1 Missense_Mutation p.A298V 0.16 deleterious(0.01) benign(0.292) TCGA-D5-6928-01 17 56060277 56060277 T C VEZF1 Missense_Mutation p.K171E 0.12 tolerated(0.09) probably_damaging(0.98) TCGA-D5-6928-01 17 56272447 56272447 G A EPX Silent p.P239P 0.15 TCGA-D5-6928-01 17 56290359 56290359 C T MKS1 Missense_Mutation p.R281Q 0.14 tolerated(1) benign(0) TCGA-D5-6928-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.34 TCGA-D5-6928-01 17 59974934 59974934 C T INTS2 Missense_Mutation p.V472I 0.16 tolerated(0.07) benign(0.182) TCGA-D5-6928-01 17 59988927 59988927 G A INTS2 Missense_Mutation p.A311V 0.17 tolerated(0.29) benign(0.173) TCGA-D5-6928-01 17 60088466 60088466 C T MED13 Missense_Mutation p.R471H 0.15 deleterious(0) probably_damaging(0.991) TCGA-D5-6928-01 17 60759646 60759646 C T MRC2 Missense_Mutation p.R952C 0.12 deleterious(0) probably_damaging(0.993) TCGA-D5-6928-01 17 613826 613826 G A VPS53 Nonsense_Mutation p.R39* 0.12 TCGA-D5-6928-01 17 61776411 61776411 T C LIMD2 Missense_Mutation p.S21G 0.22 tolerated(0.57) benign(0) TCGA-D5-6928-01 17 62021202 62021202 C - SCN4A Frame_Shift_Del p.D1309Tfs*4 0.16 TCGA-D5-6928-01 17 62034789 62034789 C T SCN4A Silent p.L703L 0.14 TCGA-D5-6928-01 17 62533814 62533816 TTC - CEP95 In_Frame_Del p.F796del 0.25 TCGA-D5-6928-01 17 62541845 62541855 AAAAAAAGGGG - SMURF2 3'UTR 0.44 TCGA-D5-6928-01 17 63221234 63221234 G A RGS9 Missense_Mutation p.A508T 0.13 tolerated_low_confidence(0.46) benign(0.022) TCGA-D5-6928-01 17 63957710 63957710 T - CEP112 Frame_Shift_Del p.E582Rfs*4 0.24 TCGA-D5-6928-01 17 6483052 6483052 C T KIAA0753 3'UTR 0.17 TCGA-D5-6928-01 17 65026734 65026734 G A CACNG4 Missense_Mutation p.V200I 0.09 deleterious(0) probably_damaging(0.982) TCGA-D5-6928-01 17 65942392 65942392 G A BPTF Missense_Mutation p.R2523H 0.14 probably_damaging(0.993) TCGA-D5-6928-01 17 67170474 67170474 A C ABCA10 Missense_Mutation p.I1037S 0.22 deleterious(0) possibly_damaging(0.833) TCGA-D5-6928-01 17 68129289 68129289 A - KCNJ16 Frame_Shift_Del p.A356Hfs*52 0.12 TCGA-D5-6928-01 17 68130677 68130677 A G KCNJ16 3'UTR 0.19 TCGA-D5-6928-01 17 7134082 7134082 G A DVL2 Missense_Mutation p.R77C 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-D5-6928-01 17 71348719 71348719 G A SDK2 Missense_Mutation p.T1884M 0.19 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 17 71426682 71426682 G A SDK2 Silent p.C517C 0.14 TCGA-D5-6928-01 17 7187065 7187065 C T SLC2A4 Missense_Mutation p.A111V 0.22 deleterious(0.02) possibly_damaging(0.864) TCGA-D5-6928-01 17 72205348 72205348 G A RPL38 Silent p.K29K 0.17 TCGA-D5-6928-01 17 72435981 72435981 G T GPRC5C Missense_Mutation p.W67C 0.24 tolerated(0.19) benign(0.1) TCGA-D5-6928-01 17 72539059 72539059 G T CD300C Silent p.P156P 0.26 TCGA-D5-6928-01 17 72741365 72741365 A G RAB37 Intron 0.17 TCGA-D5-6928-01 17 73759198 73759198 A G GALK1 Missense_Mutation p.C170R 0.13 deleterious(0) probably_damaging(0.989) TCGA-D5-6928-01 17 73897919 73897919 G A MRPL38 Silent p.Y155Y 0.15 TCGA-D5-6928-01 17 74072731 74072731 G A GALR2 Missense_Mutation p.R128H 0.25 tolerated(0.07) probably_damaging(0.977) TCGA-D5-6928-01 17 74087253 74087253 T C EXOC7 Missense_Mutation p.K291R 0.09 tolerated(0.33) benign(0.199) TCGA-D5-6928-01 17 74738062 74738062 C T MFSD11 Missense_Mutation p.A91V 0.15 tolerated(0.14) possibly_damaging(0.794) TCGA-D5-6928-01 17 7491685 7491685 G A SOX15 3'UTR 0.17 TCGA-D5-6928-01 17 76133319 76133319 C T TMC8 Silent p.C377C 0.16 TCGA-D5-6928-01 17 76160254 76160254 C T C17orf99 Missense_Mutation p.A150V 0.15 tolerated(0.33) benign(0.001) TCGA-D5-6928-01 17 76490851 76490851 C T DNAH17 Missense_Mutation p.G2018S 0.20 probably_damaging(1) TCGA-D5-6928-01 17 7681670 7681671 - A DNAH2 Frame_Shift_Ins p.T1810Dfs*22 0.13 TCGA-D5-6928-01 17 7689661 7689661 G A DNAH2 Splice_Site p.X2116_splice 0.26 TCGA-D5-6928-01 17 7751625 7751626 - C KDM6B Frame_Shift_Ins p.T676Hfs*8 0.16 TCGA-D5-6928-01 17 7752466 7752466 C - KDM6B Frame_Shift_Del p.A956Hfs*135 0.10 TCGA-D5-6928-01 17 77922768 77922768 G A TBC1D16 Missense_Mutation p.R482C 0.19 deleterious(0.02) benign(0.219) TCGA-D5-6928-01 17 7798345 7798345 C T CHD3 Silent p.R519R 0.14 TCGA-D5-6928-01 17 78321923 78321923 C T RNF213 Missense_Mutation p.T3263M 0.17 probably_damaging(0.999) TCGA-D5-6928-01 17 7837803 7837803 G A CNTROB Missense_Mutation p.A126T 0.14 tolerated(0.55) benign(0.003) TCGA-D5-6928-01 17 79168673 79168673 G A AZI1 Nonsense_Mutation p.R706* 0.14 TCGA-D5-6928-01 17 79182760 79182760 C T AZI1 Silent p.T80T 0.19 TCGA-D5-6928-01 17 79496351 79496351 C T FSCN2 Missense_Mutation p.A265V 0.12 deleterious(0.02) probably_damaging(0.942) TCGA-D5-6928-01 17 80042477 80042477 G A FASN Silent p.G1560G 0.12 TCGA-D5-6928-01 17 80207335 80207335 G - CSNK1D Frame_Shift_Del p.T344Hfs*26 0.23 TCGA-D5-6928-01 17 80897305 80897305 C T TBCD Silent p.G1144G 0.23 TCGA-D5-6928-01 17 8108330 8108330 C A AURKB Missense_Mutation p.M298I 0.25 tolerated(0.16) benign(0.016) TCGA-D5-6928-01 17 8736350 8736350 G A PIK3R6 Missense_Mutation p.R220C 0.19 tolerated(0.07) benign(0.004) TCGA-D5-6928-01 17 8790460 8790460 G A PIK3R5 Missense_Mutation p.R620C 0.15 deleterious(0) possibly_damaging(0.903) TCGA-D5-6928-01 17 8791501 8791501 A G PIK3R5 Missense_Mutation p.Y535H 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 17 8926263 8926263 G A NTN1 Silent p.A191A 0.21 TCGA-D5-6928-01 17 915218 915218 G A ABR Missense_Mutation p.R657C 0.12 tolerated(0.05) possibly_damaging(0.586) TCGA-D5-6928-01 18 11752477 11752477 C T GNAL Intron 0.30 TCGA-D5-6928-01 18 12254927 12254927 G T CIDEA Intron 0.21 TCGA-D5-6928-01 18 13095503 13095503 G A CEP192 Missense_Mutation p.D2086N 0.21 tolerated(0.22) possibly_damaging(0.495) TCGA-D5-6928-01 18 13737072 13737072 G A RNMT Missense_Mutation p.C206Y 0.10 deleterious(0) probably_damaging(0.928) TCGA-D5-6928-01 18 14542671 14542671 C T POTEC Missense_Mutation p.V159I 0.24 tolerated(0.08) probably_damaging(0.939) TCGA-D5-6928-01 18 14543339 14543339 G T POTEC 5'Flank 0.30 TCGA-D5-6928-01 18 18534847 18534847 C T ROCK1 Nonsense_Mutation p.W1250* 0.16 TCGA-D5-6928-01 18 19353627 19353627 G A MIB1 Missense_Mutation p.A192T 0.28 deleterious(0.01) probably_damaging(0.919) TCGA-D5-6928-01 18 19995711 19995711 G A CTAGE1 Silent p.F688F 0.08 TCGA-D5-6928-01 18 21119840 21119840 G A NPC1 Silent p.G910G 0.26 TCGA-D5-6928-01 18 24496307 24496307 A G CHST9 Silent p.D416D 0.14 TCGA-D5-6928-01 18 29340789 29340789 G A SLC25A52 5'UTR 0.32 TCGA-D5-6928-01 18 3215113 3215113 C T MYOM1 Missense_Mutation p.A37T 0.30 deleterious_low_confidence(0.05) benign(0.037) TCGA-D5-6928-01 18 33754606 33754606 G T ELP2 3'UTR 0.23 TCGA-D5-6928-01 18 346327 346327 C T COLEC12 Missense_Mutation p.G432D 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-D5-6928-01 18 3582016 3582016 C T DLGAP1 Missense_Mutation p.A608T 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-D5-6928-01 18 45556141 45556141 G A ZBTB7C Silent p.C450C 0.34 TCGA-D5-6928-01 18 45566672 45566672 C T ZBTB7C Silent p.Q269Q 0.30 TCGA-D5-6928-01 18 46447733 46447733 C T SMAD7 3'UTR 0.26 TCGA-D5-6928-01 18 47364072 47364072 T C MYO5B Silent p.S1651S 0.19 TCGA-D5-6928-01 18 47811499 47811499 G A CXXC1 Missense_Mutation p.A262V 0.30 tolerated(0.33) benign(0) TCGA-D5-6928-01 18 52556538 52556538 G A RAB27B Missense_Mutation p.R184Q 0.19 deleterious(0.03) benign(0.083) TCGA-D5-6928-01 18 5416071 5416071 A T EPB41L3 Missense_Mutation p.Y605N 0.16 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 18 5423442 5423442 C T EPB41L3 Missense_Mutation p.R425H 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 18 59221564 59221564 C T CDH20 Missense_Mutation p.A681V 0.31 tolerated(0.15) possibly_damaging(0.902) TCGA-D5-6928-01 18 59749930 59749930 A G PIGN Missense_Mutation p.L851S 0.20 tolerated(0.08) benign(0.101) TCGA-D5-6928-01 18 60243765 60243765 G T ZCCHC2 Missense_Mutation p.A1164S 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-D5-6928-01 18 60506019 60506021 AGA - PHLPP1 In_Frame_Del p.E594del 0.34 TCGA-D5-6928-01 18 61328041 61328041 G A SERPINB3 Missense_Mutation p.T72I 0.25 tolerated(0.17) benign(0.098) TCGA-D5-6928-01 18 64202228 64202228 T C CDH19 Missense_Mutation p.E444G 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 18 72343574 72343574 A G ZNF407 Missense_Mutation p.D200G 0.24 deleterious(0.01) possibly_damaging(0.783) TCGA-D5-6928-01 18 72914151 72914151 G A ZADH2 Silent p.G118G 0.13 TCGA-D5-6928-01 18 72999686 72999686 A G TSHZ1 Missense_Mutation p.Y730C 0.38 tolerated(0.05) probably_damaging(0.99) TCGA-D5-6928-01 18 73001230 73001231 - A TSHZ1 3'UTR 0.10 TCGA-D5-6928-01 18 745788 745788 C A YES1 Missense_Mutation p.R215M 0.26 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 18 77475336 77475336 G A CTDP1 Missense_Mutation p.V626M 0.10 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 18 77513702 77513702 G T CTDP1 Missense_Mutation p.R933M 0.08 tolerated(0.05) possibly_damaging(0.827) TCGA-D5-6928-01 18 77513844 77513844 C T CTDP1 3'UTR 0.33 TCGA-D5-6928-01 19 1008741 1008741 G A GRIN3B Missense_Mutation p.R864H 0.10 deleterious(0) probably_damaging(0.991) TCGA-D5-6928-01 19 1032389 1032389 A G CNN2 Splice_Site p.X62_splice 0.13 TCGA-D5-6928-01 19 10557019 10557019 G A PDE4A Missense_Mutation p.R149H 0.11 deleterious(0) probably_damaging(0.967) TCGA-D5-6928-01 19 10574475 10574475 C T PDE4A Missense_Mutation p.R584W 0.24 deleterious(0) probably_damaging(0.985) TCGA-D5-6928-01 19 10625096 10625096 C T S1PR5 Missense_Mutation p.V198M 0.12 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 19 10659690 10659690 G A ATG4D Missense_Mutation p.V316M 0.17 tolerated(0.12) probably_damaging(0.976) TCGA-D5-6928-01 19 10670096 10670096 C T KRI1 Missense_Mutation p.G384D 0.11 deleterious(0.05) possibly_damaging(0.617) TCGA-D5-6928-01 19 1074612 1074612 G A HMHA1 Splice_Site p.X348_splice 0.20 TCGA-D5-6928-01 19 10795239 10795239 G T ILF3 Intron 0.13 TCGA-D5-6928-01 19 11132437 11132437 C T SMARCA4 Missense_Mutation p.R885C 0.21 probably_damaging(0.998) TCGA-D5-6928-01 19 11145705 11145705 G A SMARCA4 Missense_Mutation p.R1356Q 0.16 probably_damaging(0.997) TCGA-D5-6928-01 19 1119105 1119105 C T SBNO2 Missense_Mutation p.A478T 0.18 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 19 11436202 11436202 G A RAB3D Missense_Mutation p.R178C 0.38 deleterious(0.04) benign(0.135) TCGA-D5-6928-01 19 1255556 1255556 G A MIDN Missense_Mutation p.R331H 0.15 deleterious(0) possibly_damaging(0.522) TCGA-D5-6928-01 19 1257203 1257203 G A MIDN Missense_Mutation p.D447N 0.24 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-D5-6928-01 19 1257317 1257317 C T MIDN 3'UTR 0.16 TCGA-D5-6928-01 19 13007110 13007110 C T GCDH Missense_Mutation p.R243W 0.15 deleterious_low_confidence(0) benign(0.001) TCGA-D5-6928-01 19 13246092 13246092 G A NACC1 Missense_Mutation p.R24Q 0.25 deleterious(0) probably_damaging(0.931) TCGA-D5-6928-01 19 14164456 14164456 G A PALM3 Silent p.G661G 0.21 TCGA-D5-6928-01 19 1430253 1430254 - C DAZAP1 Frame_Shift_Ins p.P258Afs*169 0.08 TCGA-D5-6928-01 19 14581013 14581013 A G PKN1 Missense_Mutation p.T784A 0.21 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 19 14593517 14593517 C T GIPC1 Missense_Mutation p.R91H 0.19 tolerated(0.1) benign(0) TCGA-D5-6928-01 19 14910510 14910510 C A OR7C1 Missense_Mutation p.G147W 0.12 tolerated_low_confidence(0.07) probably_damaging(0.988) TCGA-D5-6928-01 19 15052351 15052351 C T OR7C2 Silent p.F17F 0.09 TCGA-D5-6928-01 19 15374305 15374305 G A BRD4 Nonsense_Mutation p.R423* 0.10 TCGA-D5-6928-01 19 15571876 15571876 C T RASAL3 Missense_Mutation p.V201I 0.09 tolerated(0.16) benign(0.026) TCGA-D5-6928-01 19 15769147 15769147 G A CYP4F3 Missense_Mutation p.A397T 0.20 tolerated(0.27) benign(0.005) TCGA-D5-6928-01 19 16631376 16631376 C A C19orf44 3'UTR 0.21 TCGA-D5-6928-01 19 16799109 16799109 C T TMEM38A Missense_Mutation p.S276L 0.14 tolerated(0.06) benign(0.036) TCGA-D5-6928-01 19 1783196 1783196 G T ATP8B3 Missense_Mutation p.S1245Y 0.16 deleterious(0.03) possibly_damaging(0.845) TCGA-D5-6928-01 19 17877562 17877562 G T FCHO1 Missense_Mutation p.Q93H 0.16 tolerated(0.39) benign(0.005) TCGA-D5-6928-01 19 17922599 17922599 C T B3GNT3 Missense_Mutation p.R263W 0.16 tolerated(0.19) possibly_damaging(0.809) TCGA-D5-6928-01 19 18047353 18047353 G A CCDC124 Missense_Mutation p.D42N 0.16 tolerated(0.13) benign(0.017) TCGA-D5-6928-01 19 18273829 18273829 G T PIK3R2 Missense_Mutation p.G388C 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 19 18308289 18308289 G A RAB3A Silent p.C218C 0.19 TCGA-D5-6928-01 19 18542165 18542165 C - SSBP4 Frame_Shift_Del p.G127Afs*13 0.25 TCGA-D5-6928-01 19 18976407 18976407 A G UPF1 Silent p.G1019G 0.16 TCGA-D5-6928-01 19 19010488 19010488 T G COPE Nonstop_Mutation p.*309Cext*55 0.24 TCGA-D5-6928-01 19 19257366 19257366 G - MEF2B Frame_Shift_Del p.P256Qfs*? 0.15 TCGA-D5-6928-01 19 19748785 19748785 G A GMIP Nonsense_Mutation p.R291* 0.14 TCGA-D5-6928-01 19 19766159 19766159 G A ATP13A1 Silent p.A500A 0.17 TCGA-D5-6928-01 19 20235986 20235986 G A CTC-260E6.2 RNA 0.25 TCGA-D5-6928-01 19 21476131 21476131 T C ZNF708 Missense_Mutation p.N546S 0.13 tolerated(0.87) benign(0.001) TCGA-D5-6928-01 19 22157265 22157265 G A ZNF208 Missense_Mutation p.H191Y 0.14 deleterious(0.02) probably_damaging(0.922) TCGA-D5-6928-01 19 22785676 22785676 G T AC011467.1 3'Flank 0.23 TCGA-D5-6928-01 19 23578250 23578250 G T ZNF91 5'UTR 0.29 TCGA-D5-6928-01 19 2733274 2733274 G C SLC39A3 Silent p.G140G 0.19 TCGA-D5-6928-01 19 2878334 2878334 A G ZNF556 3'UTR 0.14 TCGA-D5-6928-01 19 2916208 2916208 G A ZNF57 Missense_Mutation p.C88Y 0.10 tolerated(0.95) benign(0.001) TCGA-D5-6928-01 19 30505869 30505869 G A URI1 Missense_Mutation p.A501T 0.17 deleterious(0.01) benign(0.222) TCGA-D5-6928-01 19 30935046 30935046 C T ZNF536 Missense_Mutation p.R193C 0.11 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 19 32844164 32844164 A G ZNF507 Missense_Mutation p.H143R 0.13 deleterious(0) probably_damaging(0.954) TCGA-D5-6928-01 19 33122335 33122335 A C ANKRD27 Silent p.T394T 0.13 TCGA-D5-6928-01 19 33167874 33167874 C T RGS9BP Silent p.S235S 0.19 TCGA-D5-6928-01 19 33701729 33701729 G - SLC7A10 Frame_Shift_Del p.I365Sfs*58 0.36 TCGA-D5-6928-01 19 33703794 33703794 G - SLC7A10 Frame_Shift_Del p.T158Pfs*12 0.30 TCGA-D5-6928-01 19 33870846 33870846 A - CEBPG 3'UTR 0.12 TCGA-D5-6928-01 19 33873527 33873527 T - CEBPG 3'UTR 0.08 TCGA-D5-6928-01 19 35533372 35533372 A C HPN 5'UTR 0.16 TCGA-D5-6928-01 19 35757409 35757409 C A LSR Missense_Mutation p.P357H 0.16 deleterious(0.04) benign(0.017) TCGA-D5-6928-01 19 35849879 35862348 19:35849879-35862348 - FFAR3 large deletion 0.21 TCGA-D5-6928-01 19 3586634 3586634 G T GIPC3 Missense_Mutation p.G123W 0.14 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 19 36038336 36038336 A G TMEM147 Missense_Mutation p.N221S 0.15 tolerated(0.6) benign(0.001) TCGA-D5-6928-01 19 36049476 36049476 C T ATP4A Intron 0.33 TCGA-D5-6928-01 19 362192 362192 C T THEG 3'UTR 0.17 TCGA-D5-6928-01 19 36387011 36387011 C T NFKBID Silent p.T159T 0.08 TCGA-D5-6928-01 19 36394697 36394698 CT - HCST Frame_Shift_Del p.L47Afs*10 0.37 TCGA-D5-6928-01 19 36523200 36523200 C T CLIP3 Silent p.E20E 0.10 TCGA-D5-6928-01 19 36579993 36579993 C T WDR62 Missense_Mutation p.R608C 0.35 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 19 36642416 36642416 G A COX7A1 Silent p.G45G 0.11 TCGA-D5-6928-01 19 36673456 36673456 C T ZNF565 Missense_Mutation p.G471D 0.12 deleterious(0.02) probably_damaging(0.991) TCGA-D5-6928-01 19 36673932 36673932 G A ZNF565 Silent p.C312C 0.13 TCGA-D5-6928-01 19 37310321 37310322 - T ZNF790 Frame_Shift_Ins p.P309Tfs*3 0.10 TCGA-D5-6928-01 19 37310498 37310498 C T ZNF790 Missense_Mutation p.G250S 0.11 deleterious(0.02) probably_damaging(0.985) TCGA-D5-6928-01 19 3736227 3736227 G - TJP3 Frame_Shift_Del p.G408Afs*31 0.12 TCGA-D5-6928-01 19 3762745 3762745 G - MRPL54 Frame_Shift_Del p.A18Pfs*5 0.12 TCGA-D5-6928-01 19 37734538 37734538 G A ZNF383 Missense_Mutation p.R467H 0.14 tolerated(0.23) benign(0.003) TCGA-D5-6928-01 19 37838731 37838731 G A HKR1 Silent p.A90A 0.16 TCGA-D5-6928-01 19 3808944 3808944 G A ZFR2 Missense_Mutation p.A824V 0.14 deleterious(0) possibly_damaging(0.746) TCGA-D5-6928-01 19 38229945 38229945 G T ZNF573 Silent p.G482G 0.10 TCGA-D5-6928-01 19 38573455 38573455 A G SIPA1L3 Missense_Mutation p.D417G 0.08 deleterious(0) possibly_damaging(0.824) TCGA-D5-6928-01 19 38990636 38990636 C T RYR1 Missense_Mutation p.R2435C 0.21 benign(0.136) TCGA-D5-6928-01 19 39191647 39191647 C T ACTN4 Missense_Mutation p.R95W 0.15 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 19 39292471 39292471 G A LGALS4 Missense_Mutation p.S302L 0.11 tolerated(0.25) benign(0.011) TCGA-D5-6928-01 19 39330958 39330959 - G HNRNPL Frame_Shift_Ins p.P338Tfs*56 0.23 TCGA-D5-6928-01 19 39788903 39788903 C A IFNL1 Missense_Mutation p.H148Q 0.10 tolerated(0.24) benign(0.014) TCGA-D5-6928-01 19 39847526 39847526 C A SAMD4B 5'UTR 0.12 TCGA-D5-6928-01 19 39906021 39906021 A G PLEKHG2 Missense_Mutation p.S141G 0.09 tolerated_low_confidence(0.11) possibly_damaging(0.61) TCGA-D5-6928-01 19 40408120 40408120 G T FCGBP Missense_Mutation p.P1534Q 0.08 possibly_damaging(0.527) TCGA-D5-6928-01 19 40719462 40719462 C - MAP3K10 Frame_Shift_Del p.P627Lfs*50 0.38 TCGA-D5-6928-01 19 40895466 40895466 G - HIPK4 Frame_Shift_Del p.T115Kfs*42 0.15 TCGA-D5-6928-01 19 40903256 40903256 C - PRX Frame_Shift_Del p.V335Wfs*21 0.13 TCGA-D5-6928-01 19 41086317 41086317 C T SHKBP1 Missense_Mutation p.T163M 0.13 deleterious(0.01) benign(0.34) TCGA-D5-6928-01 19 41092706 41092706 G A SHKBP1 Missense_Mutation p.A398T 0.39 deleterious(0) probably_damaging(0.919) TCGA-D5-6928-01 19 41132911 41132911 C - LTBP4 Frame_Shift_Del p.A1408Hfs*20 0.33 TCGA-D5-6928-01 19 41173537 41173537 G A NUMBL Missense_Mutation p.R556C 0.09 tolerated_low_confidence(0.06) probably_damaging(0.973) TCGA-D5-6928-01 19 41263302 41263302 C T SNRPA Missense_Mutation p.R47W 0.37 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 19 41313744 41313744 T C EGLN2 Missense_Mutation p.V400A 0.35 deleterious_low_confidence(0.03) unknown(0) TCGA-D5-6928-01 19 41810143 41810143 G A HNRNPUL1 Missense_Mutation p.V747I 0.12 tolerated_low_confidence(0.11) benign(0.103) TCGA-D5-6928-01 19 41942368 41942368 G T ATP5SL Silent p.T81T 0.44 TCGA-D5-6928-01 19 42352585 42352585 C - DMRTC2 Frame_Shift_Del p.K149Rfs*87 0.16 TCGA-D5-6928-01 19 42509878 42509878 G A GRIK5 Silent p.L754L 0.10 TCGA-D5-6928-01 19 42583290 42583290 G A ZNF574 Missense_Mutation p.A178T 0.15 tolerated(0.62) possibly_damaging(0.811) TCGA-D5-6928-01 19 42585632 42585632 C - ZNF574 3'UTR 0.31 TCGA-D5-6928-01 19 4268630 4268630 C T CCDC94 Silent p.G303G 0.14 TCGA-D5-6928-01 19 42753005 42753005 G A ERF Missense_Mutation p.P420L 0.16 deleterious_low_confidence(0.03) benign(0.091) TCGA-D5-6928-01 19 42792097 42792097 T C CIC Missense_Mutation p.S301P 0.32 probably_damaging(0.974) TCGA-D5-6928-01 19 42880267 42880267 C T MEGF8 Silent p.G2559G 0.09 TCGA-D5-6928-01 19 4288266 4288266 C T SHD Missense_Mutation p.A248V 0.18 tolerated(0.07) benign(0.02) TCGA-D5-6928-01 19 43093038 43093038 T C CEACAM8 Missense_Mutation p.I286V 0.12 deleterious(0.04) possibly_damaging(0.869) TCGA-D5-6928-01 19 43585288 43585288 G A PSG2 Missense_Mutation p.P59S 0.14 tolerated(0.12) possibly_damaging(0.708) TCGA-D5-6928-01 19 436404 436404 C T SHC2 Missense_Mutation p.A268T 0.11 deleterious(0.01) possibly_damaging(0.803) TCGA-D5-6928-01 19 44039621 44039621 G A ZNF575 Missense_Mutation p.A174T 0.11 tolerated(0.09) probably_damaging(0.912) TCGA-D5-6928-01 19 44103168 44103168 C T ZNF576 Missense_Mutation p.R91C 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-D5-6928-01 19 44223763 44223763 C T IRGC Silent p.S351S 0.33 TCGA-D5-6928-01 19 44571252 44571253 - A ZNF223 Frame_Shift_Ins p.P427Tfs*5 0.39 TCGA-D5-6928-01 19 44740664 44740664 G T ZNF227 Missense_Mutation p.G694V 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 19 44791324 44791324 G T ZNF235 3'UTR 0.19 TCGA-D5-6928-01 19 4498824 4498824 G A HDGFRP2 Missense_Mutation p.C496Y 0.25 deleterious(0) possibly_damaging(0.588) TCGA-D5-6928-01 19 45021141 45021141 G T CEACAM20 RNA 0.43 TCGA-D5-6928-01 19 4513286 4513286 G T PLIN4 Missense_Mutation p.A215D 0.15 deleterious(0.01) benign(0.206) TCGA-D5-6928-01 19 45182197 45182197 G A CEACAM19 Silent p.T216T 0.33 TCGA-D5-6928-01 19 45211246 45211246 C T CEACAM16 Missense_Mutation p.R352C 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 19 4529171 4529171 C T PLIN5 Missense_Mutation p.R145H 0.18 deleterious(0) probably_damaging(0.974) TCGA-D5-6928-01 19 45495925 45495925 C T CLPTM1 Nonsense_Mutation p.R594* 0.37 TCGA-D5-6928-01 19 45661946 45661946 A G NKPD1 Silent p.C168C 0.11 TCGA-D5-6928-01 19 45781285 45781285 A G MARK4 Silent p.K297K 0.30 TCGA-D5-6928-01 19 45849049 45849049 G A KLC3 Missense_Mutation p.E84K 0.30 deleterious(0) probably_damaging(0.985) TCGA-D5-6928-01 19 45895182 45895182 G A PPP1R13L Missense_Mutation p.P591S 0.10 tolerated(0.15) possibly_damaging(0.641) TCGA-D5-6928-01 19 46003947 46003947 G T PPM1N Missense_Mutation p.Q401H 0.18 deleterious(0.04) possibly_damaging(0.641) TCGA-D5-6928-01 19 46128026 46128026 G A EML2 Silent p.G465G 0.21 TCGA-D5-6928-01 19 46303803 46303803 G A RSPH6A Missense_Mutation p.P606L 0.08 deleterious(0) benign(0.363) TCGA-D5-6928-01 19 46318010 46318010 G - RSPH6A Frame_Shift_Del p.P142Qfs*26 0.15 TCGA-D5-6928-01 19 46506383 46506383 G A CCDC61 Missense_Mutation p.R36Q 0.38 tolerated(0.11) possibly_damaging(0.786) TCGA-D5-6928-01 19 4652104 4652104 C T TNFAIP8L1 Missense_Mutation p.R75C 0.22 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 19 47260127 47260127 G T FKRP Missense_Mutation p.G474W 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 19 47261025 47261025 C T FKRP 3'UTR 0.16 TCGA-D5-6928-01 19 47285727 47285727 C T SLC1A5 Missense_Mutation p.R246Q 0.10 tolerated(0.2) benign(0.167) TCGA-D5-6928-01 19 47658419 47658419 C T SAE1 Silent p.P192P 0.34 TCGA-D5-6928-01 19 48254171 48254171 C G GLTSCR2 Silent p.L135L 0.08 TCGA-D5-6928-01 19 48790269 48790269 A - ZNF114 3'UTR 0.42 TCGA-D5-6928-01 19 48830831 48830831 G A EMP3 Silent p.T44T 0.08 TCGA-D5-6928-01 19 49131260 49131260 C T SPHK2 Silent p.V230V 0.23 TCGA-D5-6928-01 19 49133129 49133129 C T SPHK2 3'UTR 0.44 TCGA-D5-6928-01 19 49387019 49387019 G A TULP2 Missense_Mutation p.P423S 0.11 deleterious(0) possibly_damaging(0.868) TCGA-D5-6928-01 19 49538910 49538910 G - CGB1 Frame_Shift_Del p.P142Lfs*? 0.12 TCGA-D5-6928-01 19 49548518 49548518 G A CGB5 Silent p.P155P 0.12 TCGA-D5-6928-01 19 49657511 49657511 C A HRC Missense_Mutation p.E328D 0.10 tolerated(0.24) benign(0.129) TCGA-D5-6928-01 19 49661135 49661135 G A TRPM4 Silent p.P4P 0.12 TCGA-D5-6928-01 19 49965147 49965147 C T ALDH16A1 Missense_Mutation p.R256C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6928-01 19 50103061 50103061 C T PRR12 Missense_Mutation p.A1404V 0.38 possibly_damaging(0.682) TCGA-D5-6928-01 19 50826943 50826943 G A KCNC3 Missense_Mutation p.R423C 0.13 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 19 51226914 51226914 G T CLEC11A Missense_Mutation p.E44D 0.11 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-D5-6928-01 19 5131299 5131299 C - KDM4B Frame_Shift_Del p.P511Lfs*8 0.17 TCGA-D5-6928-01 19 51503694 51503694 G T KLK8 Silent p.A117A 0.10 TCGA-D5-6928-01 19 51831104 51831104 C A IGLON5 Silent p.R296R 0.12 TCGA-D5-6928-01 19 51890523 51890523 C T LIM2 Missense_Mutation p.G59S 0.11 deleterious(0.03) probably_damaging(0.993) TCGA-D5-6928-01 19 51920857 51920857 C T SIGLEC10 5'UTR 0.34 TCGA-D5-6928-01 19 52146819 52146819 G T SIGLEC14 Silent p.T373T 0.13 TCGA-D5-6928-01 19 52496650 52496650 C T ZNF615 Missense_Mutation p.R571H 0.13 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 19 52569210 52569210 C T ZNF841 Missense_Mutation p.R642H 0.13 tolerated(0.22) benign(0.028) TCGA-D5-6928-01 19 52569259 52569259 G T ZNF841 Missense_Mutation p.Q626K 0.13 tolerated(1) benign(0.005) TCGA-D5-6928-01 19 52570747 52570747 A - ZNF841 Frame_Shift_Del p.Y130Tfs*21 0.25 TCGA-D5-6928-01 19 52580247 52580247 C T ZNF841 Missense_Mutation p.V36M 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6928-01 19 52719863 52719863 G A PPP2R1A Missense_Mutation p.D359N 0.09 deleterious(0.04) benign(0.007) TCGA-D5-6928-01 19 53056603 53056603 G T ZNF808 Missense_Mutation p.R145M 0.12 tolerated(0.06) possibly_damaging(0.818) TCGA-D5-6928-01 19 53058250 53058250 T C ZNF808 Missense_Mutation p.V694A 0.13 deleterious(0) benign(0.307) TCGA-D5-6928-01 19 53343346 53343346 G A ZNF468 3'UTR 0.34 TCGA-D5-6928-01 19 53856284 53856284 C T ZNF845 Missense_Mutation p.R786C 0.13 tolerated(0.2) benign(0.022) TCGA-D5-6928-01 19 53911593 53911593 G A ZNF765 Missense_Mutation p.R262H 0.10 tolerated(0.32) benign(0.031) TCGA-D5-6928-01 19 54376919 54376919 T G MYADM Missense_Mutation p.S46A 0.38 tolerated(0.13) possibly_damaging(0.498) TCGA-D5-6928-01 19 54377193 54377193 C T MYADM Missense_Mutation p.A137V 0.11 tolerated(0.1) probably_damaging(0.96) TCGA-D5-6928-01 19 54378037 54378037 T C MYADM 3'UTR 0.20 TCGA-D5-6928-01 19 54410014 54410014 G A PRKCG Silent p.A653A 0.40 TCGA-D5-6928-01 19 54744976 54744976 G A LILRA6 Missense_Mutation p.T229I 0.05 deleterious(0.05) benign(0.396) TCGA-D5-6928-01 19 54930395 54930395 C - TTYH1 Frame_Shift_Del p.E76Sfs*76 0.11 TCGA-D5-6928-01 19 54967903 54967903 C T LENG8 Missense_Mutation p.R512W 0.27 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 19 54967934 54967934 G A LENG8 Missense_Mutation p.R522H 0.50 deleterious(0.01) possibly_damaging(0.868) TCGA-D5-6928-01 19 54973211 54973211 C A LENG8 3'UTR 0.11 TCGA-D5-6928-01 19 55021884 55021884 G T LAIR2 3'UTR 0.18 TCGA-D5-6928-01 19 55668441 55668441 A G TNNI3 Missense_Mutation p.Y29H 0.12 tolerated(0.06) possibly_damaging(0.776) TCGA-D5-6928-01 19 55686698 55686698 C T SYT5 Missense_Mutation p.V184M 0.20 deleterious(0.02) probably_damaging(0.915) TCGA-D5-6928-01 19 55858784 55858784 C A SUV420H2 Silent p.S452S 0.11 TCGA-D5-6928-01 19 5590343 5590343 C - SAFB2 Frame_Shift_Del p.G824Afs*8 0.21 TCGA-D5-6928-01 19 56005988 56005988 G T SSC5D Missense_Mutation p.G409C 0.10 probably_damaging(0.922) TCGA-D5-6928-01 19 56030265 56030265 C T SSC5D Missense_Mutation p.A1541V 0.16 unknown(0) TCGA-D5-6928-01 19 57325084 57325084 G A PEG3 Missense_Mutation p.R1576C 0.11 deleterious(0.02) probably_damaging(0.959) TCGA-D5-6928-01 19 5739412 5739412 G - CATSPERD Frame_Shift_Del p.G180Dfs*19 0.24 TCGA-D5-6928-01 19 57640239 57640239 A - USP29 Frame_Shift_Del p.R68Dfs*7 0.22 TCGA-D5-6928-01 19 57640520 57640520 G A USP29 Silent p.K159K 0.39 TCGA-D5-6928-01 19 57773010 57773010 G A CTC-444N24.8 RNA 0.13 TCGA-D5-6928-01 19 57774079 57774079 T C CTC-444N24.8 RNA 0.34 TCGA-D5-6928-01 19 57839236 57839236 A - ZNF543 Frame_Shift_Del p.I137* 0.08 TCGA-D5-6928-01 19 57955427 57955427 G T ZNF749 Missense_Mutation p.G304V 0.09 tolerated(0.09) probably_damaging(0.995) TCGA-D5-6928-01 19 58018106 58018106 G - ZNF773 Frame_Shift_Del p.E216Kfs*24 0.13 TCGA-D5-6928-01 19 58452231 58452231 T C ZNF256 3'UTR 0.15 TCGA-D5-6928-01 19 58571456 58571456 C T ZNF135 Intron 0.34 TCGA-D5-6928-01 19 58806761 58806761 G T ZNF8 Missense_Mutation p.K529N 0.13 deleterious(0.03) benign(0.1) TCGA-D5-6928-01 19 58945218 58945218 A G ZNF132 Silent p.I531I 0.40 TCGA-D5-6928-01 19 58982407 58982407 C T ZNF324 Missense_Mutation p.A183V 0.09 tolerated(0.36) benign(0.01) TCGA-D5-6928-01 19 6454371 6454371 G A SLC25A23 Missense_Mutation p.A253V 0.23 deleterious(0.04) probably_damaging(0.981) TCGA-D5-6928-01 19 652837 652837 C T RNF126 Silent p.P41P 0.09 TCGA-D5-6928-01 19 6718370 6718370 G T C3 Silent p.T107T 0.14 TCGA-D5-6928-01 19 7083371 7083371 G A ZNF557 Silent p.T303T 0.12 TCGA-D5-6928-01 19 746400 746400 G A PALM Silent p.T250T 0.14 TCGA-D5-6928-01 19 757610 757610 G T MISP Missense_Mutation p.G222C 0.22 tolerated(0.21) benign(0.006) TCGA-D5-6928-01 19 7592423 7592423 C - MCOLN1 Frame_Shift_Del p.E199Sfs*39 0.18 TCGA-D5-6928-01 19 7805430 7805430 C T CD209 3'UTR 0.16 TCGA-D5-6928-01 19 7833868 7833868 C T CLEC4M Silent p.D398D 0.11 TCGA-D5-6928-01 19 7987441 7987441 C A SNAPC2 Missense_Mutation p.P266H 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 19 8370034 8370034 C T CD320 Missense_Mutation p.S50N 0.23 deleterious(0.04) benign(0.008) TCGA-D5-6928-01 19 8466978 8466978 G A RAB11B Missense_Mutation p.R82H 0.20 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-D5-6928-01 19 8661933 8661933 G A ADAMTS10 Silent p.G326G 0.14 TCGA-D5-6928-01 19 8670136 8670136 G A ADAMTS10 Missense_Mutation p.R66C 0.17 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 19 8807779 8807779 G A ACTL9 3'UTR 0.14 TCGA-D5-6928-01 19 9009269 9009270 GA - MUC16 Frame_Shift_Del p.L13068Qfs*3 0.12 TCGA-D5-6928-01 19 9027223 9027223 G A MUC16 Silent p.S12221S 0.19 TCGA-D5-6928-01 19 9077352 9077352 G T MUC16 Missense_Mutation p.S3365Y 0.17 unknown(0) TCGA-D5-6928-01 19 9084425 9084425 C T MUC16 Missense_Mutation p.A2464T 0.10 unknown(0) TCGA-D5-6928-01 19 9086041 9086041 G A MUC16 Missense_Mutation p.S1925F 0.16 unknown(0) TCGA-D5-6928-01 19 9524257 9524257 G T ZNF266 Silent p.S448S 0.18 TCGA-D5-6928-01 19 984407 984407 G A WDR18 Nonsense_Mutation p.W18* 0.11 TCGA-D5-6928-01 1 100964719 100964719 C - CDC14A Frame_Shift_Del p.H554Tfs*27 0.18 TCGA-D5-6928-01 1 101004766 101004766 G A GPR88 Missense_Mutation p.A82T 0.15 deleterious(0.01) possibly_damaging(0.898) TCGA-D5-6928-01 1 101440470 101440470 T C SLC30A7 Intron 0.18 TCGA-D5-6928-01 1 101490984 101490984 C T DPH5 Missense_Mutation p.G6R 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 103405991 103405991 C A COL11A1 Splice_Site p.X1093_splice 0.08 TCGA-D5-6928-01 1 10720568 10720568 G A CASZ1 Silent p.Y177Y 0.16 TCGA-D5-6928-01 1 109318983 109318983 G A STXBP3 Missense_Mutation p.A208T 0.22 deleterious(0.02) probably_damaging(0.974) TCGA-D5-6928-01 1 109735270 109735270 C A KIAA1324 Missense_Mutation p.S574Y 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 109807511 109807511 C T CELSR2 Missense_Mutation p.T1829I 0.18 tolerated(0.13) benign(0.011) TCGA-D5-6928-01 1 110714821 110714821 C T SLC6A17 Silent p.I142I 0.23 TCGA-D5-6928-01 1 110737231 110737231 G A SLC6A17 Missense_Mutation p.A444T 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-D5-6928-01 1 11080584 11080584 C T TARDBP Silent p.Y214Y 0.30 TCGA-D5-6928-01 1 110884662 110884662 G A RBM15 Missense_Mutation p.D879N 0.20 tolerated(0.21) benign(0.137) TCGA-D5-6928-01 1 111892777 111892777 C A PIFO Missense_Mutation p.P147T 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 111957125 111957125 T - OVGP1 Frame_Shift_Del p.E667Kfs*30 0.16 TCGA-D5-6928-01 1 11255229 11255229 A - ANGPTL7 3'UTR 0.32 TCGA-D5-6928-01 1 114483945 114483945 G A HIPK1 Missense_Mutation p.A314T 0.16 deleterious(0) possibly_damaging(0.879) TCGA-D5-6928-01 1 115164618 115164618 C T DENND2C Silent p.R375R 0.12 TCGA-D5-6928-01 1 1152918 1152918 C T SDF4 Missense_Mutation p.A355T 0.37 deleterious(0) probably_damaging(0.988) TCGA-D5-6928-01 1 11561711 11561711 C T PTCHD2 Missense_Mutation p.P221L 0.16 tolerated(0.3) benign(0.001) TCGA-D5-6928-01 1 116574218 116574218 C T SLC22A15 Intron 0.08 TCGA-D5-6928-01 1 1177939 1177948 GGAGCAGCCC - FAM132A Frame_Shift_Del p.G297Wfs*23 0.30 TCGA-D5-6928-01 1 118523942 118523944 CTT - SPAG17 In_Frame_Del p.K1985del 0.11 TCGA-D5-6928-01 1 119427303 119427303 G T TBX15 3'UTR 0.15 TCGA-D5-6928-01 1 11982682 11982682 C T KIAA2013 Intron 0.14 TCGA-D5-6928-01 1 120337207 120337207 C T REG4 3'UTR 0.12 TCGA-D5-6928-01 1 120438037 120438037 G A ADAM30 Missense_Mutation p.S308L 0.21 tolerated(0.08) possibly_damaging(0.657) TCGA-D5-6928-01 1 12198391 12198391 G T TNFRSF8 Nonsense_Mutation p.E481* 0.19 TCGA-D5-6928-01 1 1233205 1233205 G A ACAP3 Silent p.S375S 0.30 TCGA-D5-6928-01 1 12414217 12414217 G A VPS13D Silent p.T3206T 0.32 TCGA-D5-6928-01 1 1249297 1249297 G A CPSF3L Missense_Mutation p.R264C 0.11 deleterious(0) probably_damaging(0.954) TCGA-D5-6928-01 1 1289874 1289874 C T MXRA8 Missense_Mutation p.R322H 0.33 deleterious(0.05) possibly_damaging(0.67) TCGA-D5-6928-01 1 1374462 1374462 C T VWA1 Silent p.D211D 0.24 TCGA-D5-6928-01 1 13839490 13839490 C A LRRC38 Missense_Mutation p.W200L 0.10 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 1 13839545 13839545 G A LRRC38 Missense_Mutation p.R182C 0.11 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 1 1417628 1417628 G A ATAD3B Missense_Mutation p.E209K 0.23 tolerated(0.06) possibly_damaging(0.899) TCGA-D5-6928-01 1 142804515 142804515 C T RP11-423O2.5 RNA 0.33 TCGA-D5-6928-01 1 144911920 144911920 G T PDE4DIP Missense_Mutation p.T730N 0.10 tolerated(0.13) possibly_damaging(0.761) TCGA-D5-6928-01 1 146739127 146739127 A G CHD1L Missense_Mutation p.N313S 0.12 deleterious(0.03) probably_damaging(0.951) TCGA-D5-6928-01 1 149884927 149884927 G T SV2A Missense_Mutation p.L156I 0.11 tolerated(1) benign(0.123) TCGA-D5-6928-01 1 150443735 150443735 C - RPRD2 Frame_Shift_Del p.P772Lfs*42 0.17 TCGA-D5-6928-01 1 150812019 150812019 C T ARNT Silent p.K128K 0.13 TCGA-D5-6928-01 1 151115130 151115130 C - SEMA6C 5'UTR 0.13 TCGA-D5-6928-01 1 151753979 151753979 C T TDRKH Missense_Mutation p.R70Q 0.17 tolerated(0.11) benign(0.382) TCGA-D5-6928-01 1 151811621 151811621 G A C2CD4D 5'UTR 0.20 TCGA-D5-6928-01 1 152082719 152082719 C T TCHH Missense_Mutation p.E992K 0.21 unknown(0) TCGA-D5-6928-01 1 152084909 152084909 C T TCHH Missense_Mutation p.E262K 0.17 unknown(0) TCGA-D5-6928-01 1 152284133 152284133 G A FLG Missense_Mutation p.H1077Y 0.12 benign(0.444) TCGA-D5-6928-01 1 152382363 152382363 C A CRNN Missense_Mutation p.V399L 0.18 tolerated(0.17) benign(0.011) TCGA-D5-6928-01 1 152659479 152659479 G A LCE2B Missense_Mutation p.G54S 0.15 tolerated_low_confidence(1) unknown(0) TCGA-D5-6928-01 1 153654303 153654303 C A NPR1 Silent p.R387R 0.19 TCGA-D5-6928-01 1 153700944 153700944 G A INTS3 5'UTR 0.17 TCGA-D5-6928-01 1 154033426 154033426 C T NUP210L Missense_Mutation p.D914N 0.11 tolerated(0.16) benign(0.039) TCGA-D5-6928-01 1 154112368 154112368 T - NUP210L Frame_Shift_Del p.E210Rfs*7 0.16 TCGA-D5-6928-01 1 154171947 154171947 C T C1orf189 Missense_Mutation p.E88K 0.20 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 1 154294488 154294488 G A AQP10 Missense_Mutation p.G62D 0.13 tolerated(0.06) possibly_damaging(0.71) TCGA-D5-6928-01 1 155033946 155033946 C A ADAM15 Missense_Mutation p.P778H 0.12 tolerated(0.13) probably_damaging(0.999) TCGA-D5-6928-01 1 155041387 155041388 - G EFNA4 Intron 0.23 TCGA-D5-6928-01 1 155254371 155254371 G T HCN3 Missense_Mutation p.K304N 0.31 deleterious(0) benign(0.222) TCGA-D5-6928-01 1 155726775 155726776 - T GON4L Frame_Shift_Ins p.E1831Rfs*8 0.16 TCGA-D5-6928-01 1 155735341 155735341 C T GON4L Missense_Mutation p.G1308D 0.11 tolerated_low_confidence(0.49) probably_damaging(0.998) TCGA-D5-6928-01 1 156142667 156142667 T A SEMA4A Missense_Mutation p.H395Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 1 156532927 156532927 T C IQGAP3 Missense_Mutation p.H266R 0.13 tolerated(1) benign(0) TCGA-D5-6928-01 1 156708420 156708420 G - MRPL24 Frame_Shift_Del p.P26Qfs*40 0.13 TCGA-D5-6928-01 1 156756826 156756826 G A PRCC Missense_Mutation p.D315N 0.15 tolerated(0.29) possibly_damaging(0.652) TCGA-D5-6928-01 1 156851361 156851361 G A NTRK1 Missense_Mutation p.S773N 0.10 tolerated(1) benign(0.007) TCGA-D5-6928-01 1 158151327 158151327 G A CD1D Silent p.A48A 0.16 TCGA-D5-6928-01 1 158323829 158323829 T C CD1E Silent p.N17N 0.14 TCGA-D5-6928-01 1 15833453 15833453 G A CASP9 Missense_Mutation p.R191W 0.13 deleterious(0) possibly_damaging(0.512) TCGA-D5-6928-01 1 158517426 158517426 C A OR6Y1 Missense_Mutation p.G157V 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 158817648 158817648 A G MNDA Missense_Mutation p.Q373R 0.17 tolerated(0.38) benign(0.247) TCGA-D5-6928-01 1 159175734 159175734 C T DARC Missense_Mutation p.L171F 0.10 deleterious(0.03) benign(0.117) TCGA-D5-6928-01 1 159854348 159854348 G A CCDC19 Missense_Mutation p.R259W 0.08 deleterious(0.02) probably_damaging(0.927) TCGA-D5-6928-01 1 159898277 159898277 A T IGSF9 Silent p.L967L 0.28 TCGA-D5-6928-01 1 159901255 159901255 C T IGSF9 Missense_Mutation p.V501I 0.10 tolerated(0.25) benign(0.03) TCGA-D5-6928-01 1 159912845 159912846 - G IGSF9 Frame_Shift_Ins p.L52Pfs*27 0.27 TCGA-D5-6928-01 1 160121772 160121772 C A ATP1A4 5'UTR 0.28 TCGA-D5-6928-01 1 160187476 160187476 C A DCAF8 Missense_Mutation p.G721V 0.27 tolerated(0.29) benign(0.104) TCGA-D5-6928-01 1 160969698 160969698 G T F11R Missense_Mutation p.P221H 0.21 deleterious(0) possibly_damaging(0.906) TCGA-D5-6928-01 1 161017007 161017007 C T ARHGAP30 3'UTR 0.17 TCGA-D5-6928-01 1 161049492 161049492 G A PVRL4 Silent p.D109D 0.15 TCGA-D5-6928-01 1 161068553 161068553 C - KLHDC9 Frame_Shift_Del p.P78Rfs*30 0.15 TCGA-D5-6928-01 1 161136986 161136986 A C PPOX Silent p.R62R 0.14 TCGA-D5-6928-01 1 161160987 161160987 G A ADAMTS4 Missense_Mutation p.H819Y 0.10 deleterious(0.01) benign(0.036) TCGA-D5-6928-01 1 161277146 161277146 C - MPZ Frame_Shift_Del p.V46* 0.09 TCGA-D5-6928-01 1 161968083 161968083 G T OLFML2B Missense_Mutation p.L336M 0.16 deleterious(0.01) possibly_damaging(0.605) TCGA-D5-6928-01 1 169559409 169559409 C T SELP Missense_Mutation p.A824T 0.19 tolerated(0.07) benign(0.197) TCGA-D5-6928-01 1 17084265 17084265 G A MST1L RNA 0.05 TCGA-D5-6928-01 1 170928706 170928706 G T MROH9 Missense_Mutation p.G86W 0.12 deleterious(0) probably_damaging(0.985) TCGA-D5-6928-01 1 171244576 171244576 C T FMO1 Missense_Mutation p.A138V 0.25 tolerated(0.33) possibly_damaging(0.751) TCGA-D5-6928-01 1 17314833 17314833 C T ATP13A2 Missense_Mutation p.V916M 0.14 deleterious(0) probably_damaging(0.948) TCGA-D5-6928-01 1 173579223 173579223 G A ANKRD45 3'UTR 0.15 TCGA-D5-6928-01 1 173639003 173639003 C T ANKRD45 5'Flank 0.11 TCGA-D5-6928-01 1 173735333 173735333 C T KLHL20 Silent p.S400S 0.11 TCGA-D5-6928-01 1 175331843 175331843 C T TNR Missense_Mutation p.R937Q 0.20 tolerated(0.05) probably_damaging(0.93) TCGA-D5-6928-01 1 17563928 17563928 C T PADI1 Missense_Mutation p.T478I 0.19 deleterious(0) possibly_damaging(0.511) TCGA-D5-6928-01 1 17609696 17609696 G A PADI3 3'UTR 0.16 TCGA-D5-6928-01 1 178490525 178490525 G A TEX35 Intron 0.22 TCGA-D5-6928-01 1 180158720 180158720 C A QSOX1 Missense_Mutation p.L351M 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 182025992 182025992 G A ZNF648 Missense_Mutation p.T385M 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6928-01 1 183190046 183190046 G A LAMC2 Missense_Mutation p.R197H 0.16 tolerated(0.21) benign(0.001) TCGA-D5-6928-01 1 183907695 183907695 G T COLGALT2 3'UTR 0.18 TCGA-D5-6928-01 1 184041404 184041404 C T TSEN15 Missense_Mutation p.T156I 0.09 deleterious(0.01) probably_damaging(0.939) TCGA-D5-6928-01 1 185116364 185116364 T C TRMT1L Missense_Mutation p.I159V 0.09 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D5-6928-01 1 190067582 190067583 - A BRINP3 Frame_Shift_Ins p.E623* 0.15 TCGA-D5-6928-01 1 192628740 192628740 A G RGS13 3'UTR 0.24 TCGA-D5-6928-01 1 19566864 19566864 G T EMC1 Missense_Mutation p.P238H 0.13 tolerated(0.49) possibly_damaging(0.667) TCGA-D5-6928-01 1 197036384 197036384 C T F13B 5'UTR 0.16 TCGA-D5-6928-01 1 197070002 197070002 C T ASPM Missense_Mutation p.M2793I 0.11 tolerated(0.58) benign(0.002) TCGA-D5-6928-01 1 19746200 19746200 C T CAPZB Silent p.L16L 0.18 TCGA-D5-6928-01 1 197704762 197704762 C A DENND1B Intron 0.25 TCGA-D5-6928-01 1 197886626 197886626 C - LHX9 5'UTR 0.16 TCGA-D5-6928-01 1 200880634 200880634 G A C1orf106 Missense_Mutation p.R338H 0.13 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 1 201342441 201342441 G A TNNT2 5'UTR 0.19 TCGA-D5-6928-01 1 201398130 201398130 G A RP11-134G8.2 RNA 0.20 TCGA-D5-6928-01 1 201779831 201779831 G A NAV1 Missense_Mutation p.R1581H 0.28 deleterious(0.02) probably_damaging(0.975) TCGA-D5-6928-01 1 202097466 202097466 G A GPR37L1 Missense_Mutation p.A410T 0.14 deleterious(0.01) possibly_damaging(0.61) TCGA-D5-6928-01 1 203311434 203311434 C T FMOD 3'UTR 0.19 TCGA-D5-6928-01 1 204242831 204242831 G A PLEKHA6 Missense_Mutation p.R9C 0.09 deleterious(0) possibly_damaging(0.556) TCGA-D5-6928-01 1 204966331 204966331 C T NFASC Missense_Mutation p.A939V 0.14 tolerated(0.51) unknown(0) TCGA-D5-6928-01 1 205496953 205496953 C T CDK18 Missense_Mutation p.A284V 0.15 deleterious(0) possibly_damaging(0.619) TCGA-D5-6928-01 1 207300154 207300154 A - C4BPA Frame_Shift_Del p.G270Vfs*9 0.13 TCGA-D5-6928-01 1 207679277 207679277 A G CR1 Silent p.P50P 0.18 TCGA-D5-6928-01 1 208215588 208215588 G A PLXNA2 Missense_Mutation p.R1381C 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-D5-6928-01 1 20881179 20881179 C A FAM43B 3'UTR 0.16 TCGA-D5-6928-01 1 209791842 209791842 T C LAMB3 Missense_Mutation p.D955G 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 209806016 209806016 C T LAMB3 Missense_Mutation p.R245H 0.17 deleterious(0) probably_damaging(0.981) TCGA-D5-6928-01 1 210016856 210016856 G A DIEXF Silent p.T614T 0.20 TCGA-D5-6928-01 1 211751763 211751763 G T SLC30A1 Silent p.T64T 0.12 TCGA-D5-6928-01 1 212254002 212254002 A G DTL Missense_Mutation p.N391D 0.11 tolerated(0.45) benign(0.004) TCGA-D5-6928-01 1 212273745 212273745 C T DTL Silent p.T471T 0.22 TCGA-D5-6928-01 1 214488173 214488173 C A SMYD2 Silent p.P102P 0.18 TCGA-D5-6928-01 1 214543010 214543010 G A PTPN14 Nonsense_Mutation p.R1021* 0.17 TCGA-D5-6928-01 1 21553683 21553683 G A ECE1 Silent p.G606G 0.17 TCGA-D5-6928-01 1 220287774 220287774 C A IARS2 Missense_Mutation p.P533H 0.23 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 1 220300157 220300157 C T IARS2 Silent p.S603S 0.16 TCGA-D5-6928-01 1 22047552 22047552 A G USP48 Missense_Mutation p.M624T 0.17 tolerated(1) benign(0) TCGA-D5-6928-01 1 22165542 22165542 G A HSPG2 Missense_Mutation p.S3309L 0.17 benign(0.013) TCGA-D5-6928-01 1 222843547 222843549 CTT - AIDA In_Frame_Del p.R251del 0.10 TCGA-D5-6928-01 1 22315814 22315814 G A CELA3B 3'UTR 0.10 TCGA-D5-6928-01 1 223177026 223177026 C T DISP1 Missense_Mutation p.R763C 0.15 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 1 225306990 225306991 - A DNAH14 Frame_Shift_Ins p.F468Ifs*7 0.14 TCGA-D5-6928-01 1 226034912 226034912 G T TMEM63A Silent p.P751P 0.10 TCGA-D5-6928-01 1 227182574 227182574 C T CDC42BPA Missense_Mutation p.G1660R 0.19 tolerated(0.17) probably_damaging(1) TCGA-D5-6928-01 1 227935418 227935418 G A SNAP47 Missense_Mutation p.R39H 0.14 tolerated_low_confidence(0.54) benign(0.099) TCGA-D5-6928-01 1 228437868 228437868 A G OBSCN Silent p.A1504A 0.11 TCGA-D5-6928-01 1 228437869 228437869 T G OBSCN Missense_Mutation p.C1505G 0.10 benign(0) TCGA-D5-6928-01 1 228504579 228504579 C T OBSCN Silent p.D5442D 0.11 TCGA-D5-6928-01 1 228511240 228511240 C T OBSCN Silent p.G6152G 0.14 TCGA-D5-6928-01 1 228602628 228602628 C T TRIM17 Missense_Mutation p.G49D 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.71) TCGA-D5-6928-01 1 228879193 228879193 G A RHOU Silent p.T161T 0.13 TCGA-D5-6928-01 1 22923835 22923836 - C EPHA8 Frame_Shift_Ins p.L604Afs*31 0.16 TCGA-D5-6928-01 1 229567547 229567547 C T ACTA1 Missense_Mutation p.G304D 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D5-6928-01 1 229600535 229600535 T C NUP133 Missense_Mutation p.N796S 0.18 tolerated(0.7) benign(0.003) TCGA-D5-6928-01 1 22965347 22965347 G T C1QA Missense_Mutation p.G62V 0.21 deleterious(0) possibly_damaging(0.775) TCGA-D5-6928-01 1 230883219 230883219 A G CAPN9 5'UTR 0.16 TCGA-D5-6928-01 1 231299735 231299735 G - TRIM67 Frame_Shift_Del p.A342Pfs*14 0.12 TCGA-D5-6928-01 1 231488784 231488784 T C SPRTN Missense_Mutation p.S383P 0.14 tolerated(0.36) possibly_damaging(0.451) TCGA-D5-6928-01 1 235507227 235507227 C T GGPS1 3'UTR 0.19 TCGA-D5-6928-01 1 235973062 235973062 A T LYST Missense_Mutation p.N352K 0.14 deleterious(0.02) probably_damaging(0.914) TCGA-D5-6928-01 1 237013678 237013678 C - MTR Frame_Shift_Del p.R518Gfs*7 0.15 TCGA-D5-6928-01 1 237433876 237433876 G A RYR2 Missense_Mutation p.G43D 0.14 possibly_damaging(0.542) TCGA-D5-6928-01 1 23760154 23760154 C T ASAP3 Missense_Mutation p.A662T 0.09 deleterious(0.02) possibly_damaging(0.531) TCGA-D5-6928-01 1 237666729 237666729 A G RYR2 Missense_Mutation p.Y846C 0.09 benign(0.001) TCGA-D5-6928-01 1 237774130 237774130 G A RYR2 Silent p.P1584P 0.18 TCGA-D5-6928-01 1 237829869 237829869 A G RYR2 Missense_Mutation p.T2832A 0.11 benign(0.073) TCGA-D5-6928-01 1 240656415 240656415 C T GREM2 Missense_Mutation p.A121T 0.11 tolerated(0.11) possibly_damaging(0.85) TCGA-D5-6928-01 1 241767839 241767839 C T OPN3 Missense_Mutation p.R139H 0.24 tolerated(0.05) possibly_damaging(0.881) TCGA-D5-6928-01 1 241823909 241823909 C T WDR64 Missense_Mutation p.R75C 0.15 tolerated(0.67) benign(0) TCGA-D5-6928-01 1 2422649 2422649 C T PLCH2 Missense_Mutation p.R485C 0.40 deleterious(0) probably_damaging(0.921) TCGA-D5-6928-01 1 244724355 244724355 A T C1orf101 Missense_Mutation p.N472I 0.15 deleterious(0) probably_damaging(0.984) TCGA-D5-6928-01 1 2451265 2451265 G A PANK4 Silent p.F276F 0.15 TCGA-D5-6928-01 1 248005043 248005043 G A OR11L1 Silent p.G52G 0.21 TCGA-D5-6928-01 1 248458541 248458541 C T OR2T12 Missense_Mutation p.A114T 0.15 tolerated(0.07) benign(0.117) TCGA-D5-6928-01 1 26383722 26383722 G C TRIM63 Missense_Mutation p.D317E 0.20 tolerated(1) benign(0.007) TCGA-D5-6928-01 1 26384982 26384982 C T TRIM63 Missense_Mutation p.A244T 0.17 tolerated(0.13) benign(0.05) TCGA-D5-6928-01 1 26669311 26669311 C T AIM1L Missense_Mutation p.M172I 0.14 tolerated(0.26) benign(0.02) TCGA-D5-6928-01 1 26691362 26691362 G A ZNF683 Silent p.D225D 0.22 TCGA-D5-6928-01 1 27121688 27121688 T A PIGV Missense_Mutation p.V388E 0.13 deleterious(0.03) possibly_damaging(0.598) TCGA-D5-6928-01 1 27676861 27676861 C T SYTL1 Intron 0.24 TCGA-D5-6928-01 1 27700907 27700907 G T FCN3 Missense_Mutation p.L43M 0.14 deleterious(0) probably_damaging(0.95) TCGA-D5-6928-01 1 29585795 29585795 C - PTPRU Frame_Shift_Del p.P168Qfs*9 0.14 TCGA-D5-6928-01 1 32050811 32050811 C T TINAGL1 Missense_Mutation p.A306V 0.10 tolerated(0.3) benign(0.008) TCGA-D5-6928-01 1 32660551 32660551 C T TXLNA Missense_Mutation p.R466W 0.09 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 1 32688067 32688067 A G EIF3I Intron 0.20 TCGA-D5-6928-01 1 32800139 32800139 A T MARCKSL1 3'UTR 0.17 TCGA-D5-6928-01 1 32946573 32946573 G A ZBTB8B Missense_Mutation p.R358Q 0.18 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 1 33790375 33790375 G A PHC2 3'UTR 0.18 TCGA-D5-6928-01 1 35251036 35251036 G - GJB3 Frame_Shift_Del p.G226Vfs*42 0.16 TCGA-D5-6928-01 1 35333226 35333226 G T DLGAP3 Missense_Mutation p.L830M 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6928-01 1 3545159 3545159 G T TPRG1L Missense_Mutation p.G271C 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-D5-6928-01 1 3553617 3553617 C T WRAP73 Missense_Mutation p.R153Q 0.14 deleterious(0) possibly_damaging(0.866) TCGA-D5-6928-01 1 35854659 35854660 - A ZMYM4 Frame_Shift_Ins p.Y806Ifs*12 0.19 TCGA-D5-6928-01 1 36030912 36030912 C T NCDN Missense_Mutation p.P613L 0.15 tolerated(0.07) benign(0.046) TCGA-D5-6928-01 1 37282661 37282662 - T GRIK3 Frame_Shift_Ins p.K698Efs*64 0.16 TCGA-D5-6928-01 1 39881012 39881012 T A KIAA0754 3'UTR 0.21 TCGA-D5-6928-01 1 39926355 39926355 C T MACF1 Missense_Mutation p.R5079C 0.16 probably_damaging(0.988) TCGA-D5-6928-01 1 39991459 39991459 G A BMP8A Missense_Mutation p.G400S 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 40366987 40366987 G - MYCL Frame_Shift_Del p.T71Rfs*69 0.14 TCGA-D5-6928-01 1 40961015 40961015 C T ZFP69 Missense_Mutation p.H289Y 0.11 tolerated(0.05) probably_damaging(0.997) TCGA-D5-6928-01 1 40961710 40961710 C T ZFP69 Silent p.N520N 0.24 TCGA-D5-6928-01 1 43011134 43011134 A - CCDC30 Frame_Shift_Del p.T105Lfs*6 0.14 TCGA-D5-6928-01 1 43205624 43205624 G A CLDN19 Silent p.G37G 0.08 TCGA-D5-6928-01 1 43394689 43394689 G A SLC2A1 Nonsense_Mutation p.R330* 0.36 TCGA-D5-6928-01 1 43770801 43770801 G A TIE1 Missense_Mutation p.R113H 0.23 tolerated(0.17) possibly_damaging(0.549) TCGA-D5-6928-01 1 44070932 44070932 C T PTPRF Silent p.P1069P 0.19 TCGA-D5-6928-01 1 44468608 44468608 G A SLC6A9 Missense_Mutation p.R287W 0.16 deleterious(0) probably_damaging(0.927) TCGA-D5-6928-01 1 45288194 45288194 G - PTCH2 Frame_Shift_Del p.L1169Cfs*85 0.15 TCGA-D5-6928-01 1 45294694 45294694 G A PTCH2 Missense_Mutation p.A475V 0.12 deleterious(0.03) possibly_damaging(0.746) TCGA-D5-6928-01 1 45553768 45553768 G A ZSWIM5 Missense_Mutation p.A246V 0.11 deleterious(0.05) unknown(0) TCGA-D5-6928-01 1 46543264 46543264 C T PIK3R3 Silent p.L79L 0.17 TCGA-D5-6928-01 1 47016800 47016800 C T KNCN Missense_Mutation p.G30S 0.17 deleterious_low_confidence(0.03) probably_damaging(0.972) TCGA-D5-6928-01 1 47279696 47279696 C T CYP4B1 Missense_Mutation p.R246C 0.12 deleterious(0.05) benign(0.057) TCGA-D5-6928-01 1 47649638 47649638 G T PDZK1IP1 3'UTR 0.10 TCGA-D5-6928-01 1 51061809 51061809 C T FAF1 Missense_Mutation p.R275Q 0.18 tolerated(0.55) benign(0.003) TCGA-D5-6928-01 1 52849238 52849238 C T ORC1 Missense_Mutation p.D623N 0.13 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 52927238 52927238 A T ZCCHC11 Missense_Mutation p.F1060I 0.12 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 1 53222278 53222278 G A ZYG11B Missense_Mutation p.R60Q 0.17 tolerated(0.96) benign(0) TCGA-D5-6928-01 1 53370436 53370436 C T ECHDC2 Missense_Mutation p.R195Q 0.15 tolerated(0.11) benign(0.215) TCGA-D5-6928-01 1 53535606 53535606 G A PODN Missense_Mutation p.A75T 0.15 tolerated_low_confidence(0.1) benign(0.164) TCGA-D5-6928-01 1 53607986 53607986 C T SLC1A7 Splice_Site p.X45_splice 0.11 TCGA-D5-6928-01 1 53927149 53927149 G A DMRTB1 Missense_Mutation p.R194H 0.11 tolerated(0.57) benign(0.001) TCGA-D5-6928-01 1 55223570 55223570 A C PARS2 Missense_Mutation p.L422R 0.20 deleterious(0.01) probably_damaging(0.978) TCGA-D5-6928-01 1 55591133 55591133 G A USP24 Nonsense_Mutation p.R1274* 0.18 TCGA-D5-6928-01 1 59248544 59248545 - A JUN Frame_Shift_Ins p.G67Wfs*40 0.22 TCGA-D5-6928-01 1 60106980 60106980 C A FGGY Missense_Mutation p.A417D 0.19 tolerated_low_confidence(0.65) benign(0.02) TCGA-D5-6928-01 1 6204194 6204194 C T CHD5 Silent p.V608V 0.19 TCGA-D5-6928-01 1 6520128 6520128 G A ESPN Silent p.T829T 0.16 TCGA-D5-6928-01 1 6529621 6529621 C T PLEKHG5 Missense_Mutation p.R718Q 0.19 tolerated(0.14) probably_damaging(0.947) TCGA-D5-6928-01 1 65330507 65330507 G T JAK1 Missense_Mutation p.S380Y 0.20 tolerated(0.42) possibly_damaging(0.547) TCGA-D5-6928-01 1 6648194 6648194 G A ZBTB48 Missense_Mutation p.R485H 0.12 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 1 71512651 71512651 G T PTGER3 Missense_Mutation p.P204T 0.21 deleterious(0.03) probably_damaging(1) TCGA-D5-6928-01 1 71512676 71512676 G A PTGER3 Silent p.G195G 0.20 TCGA-D5-6928-01 1 75065478 75065479 - T C1orf173 Frame_Shift_Ins p.E543Rfs*3 0.14 TCGA-D5-6928-01 1 75139252 75139252 C T C1orf173 5'UTR 0.26 TCGA-D5-6928-01 1 75214494 75214494 A G TYW3 Silent p.G138G 0.13 TCGA-D5-6928-01 1 78959033 78959033 T C PTGFR Missense_Mutation p.L202P 0.20 tolerated(0.19) benign(0.032) TCGA-D5-6928-01 1 82417772 82417772 G T LPHN2 Missense_Mutation p.Q576H 0.10 deleterious(0.01) possibly_damaging(0.8) TCGA-D5-6928-01 1 85418170 85418170 C T MCOLN2 Silent p.P203P 0.16 TCGA-D5-6928-01 1 86048427 86048427 G A CYR61 Missense_Mutation p.G283D 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 1 86951243 86951243 C T CLCA1 Missense_Mutation p.A318V 0.12 deleterious(0.05) benign(0.01) TCGA-D5-6928-01 1 87045631 87045631 G A CLCA4 Missense_Mutation p.R788H 0.16 tolerated(0.49) benign(0.002) TCGA-D5-6928-01 1 87805290 87805290 C T LMO4 Missense_Mutation p.A103V 0.09 tolerated(0.06) benign(0.131) TCGA-D5-6928-01 1 878268 878268 C A SAMD11 Missense_Mutation p.P465H 0.28 deleterious(0.02) possibly_damaging(0.619) TCGA-D5-6928-01 1 89329776 89329776 C A GTF2B Missense_Mutation p.G49V 0.12 deleterious(0.02) probably_damaging(0.987) TCGA-D5-6928-01 1 89655891 89655891 G A GBP4 Nonsense_Mutation p.Q343* 0.22 TCGA-D5-6928-01 1 9117597 9117597 G A SLC2A5 Missense_Mutation p.T68M 0.25 deleterious(0.02) possibly_damaging(0.73) TCGA-D5-6928-01 1 91182511 91182511 G A BARHL2 Missense_Mutation p.A81V 0.17 tolerated_low_confidence(0.22) benign(0.121) TCGA-D5-6928-01 1 91182535 91182535 G A BARHL2 Missense_Mutation p.P73L 0.17 deleterious_low_confidence(0.02) benign(0.271) TCGA-D5-6928-01 1 9323822 9323822 C T H6PD Missense_Mutation p.P424S 0.15 tolerated(0.08) benign(0.141) TCGA-D5-6928-01 1 93309483 93309484 AA - FAM69A Frame_Shift_Del p.F248Yfs*48 0.23 TCGA-D5-6928-01 1 94054600 94054600 C A BCAR3 Missense_Mutation p.R288M 0.16 deleterious(0) benign(0.062) TCGA-D5-6928-01 1 94342535 94342535 T G DNTTIP2 Missense_Mutation p.Q319P 0.15 tolerated(0.06) benign(0.048) TCGA-D5-6928-01 1 95367781 95367782 - A CNN3 Frame_Shift_Ins p.Q94Sfs*9 0.19 TCGA-D5-6928-01 1 9793553 9793553 C T CLSTN1 Missense_Mutation p.R778Q 0.29 tolerated(0.09) possibly_damaging(0.573) TCGA-D5-6928-01 20 10603428 10603428 G A SLX4IP Missense_Mutation p.A210T 0.15 tolerated(0.77) benign(0.038) TCGA-D5-6928-01 20 10633235 10633235 C T JAG1 Missense_Mutation p.G256D 0.18 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 20 1145780 1145780 G A PSMF1 3'UTR 0.22 TCGA-D5-6928-01 20 13029752 13029752 G A SPTLC3 Missense_Mutation p.A93T 0.09 tolerated(0.62) benign(0.124) TCGA-D5-6928-01 20 14306093 14306094 - T FLRT3 3'UTR 0.17 TCGA-D5-6928-01 20 1457972 1457972 G T SIRPB2 Intron 0.24 TCGA-D5-6928-01 20 18125830 18125830 C T CSRP2BP Intron 0.27 TCGA-D5-6928-01 20 19496186 19496186 C T SLC24A3 Missense_Mutation p.A109V 0.14 deleterious(0) benign(0.245) TCGA-D5-6928-01 20 20351218 20351218 T C INSM1 3'UTR 0.29 TCGA-D5-6928-01 20 20493875 20493875 C T RALGAPA2 Missense_Mutation p.A1380T 0.10 tolerated(1) benign(0.001) TCGA-D5-6928-01 20 21687213 21687213 G A PAX1 Missense_Mutation p.V142I 0.17 deleterious(0.03) probably_damaging(0.992) TCGA-D5-6928-01 20 23065878 23065878 C T CD93 Missense_Mutation p.V318I 0.28 tolerated(0.56) benign(0.001) TCGA-D5-6928-01 20 23334806 23334806 C T NXT1 Missense_Mutation p.A43V 0.18 deleterious(0) possibly_damaging(0.791) TCGA-D5-6928-01 20 2465121 2465121 G A ZNF343 Silent p.S162S 0.12 TCGA-D5-6928-01 20 2840990 2840990 C T VPS16 Missense_Mutation p.R116W 0.12 deleterious(0) possibly_damaging(0.823) TCGA-D5-6928-01 20 30365422 30365422 G A TPX2 Missense_Mutation p.R288Q 0.16 deleterious(0) possibly_damaging(0.559) TCGA-D5-6928-01 20 30452777 30452777 G A DUSP15 Missense_Mutation p.A56V 0.14 deleterious(0.03) benign(0.153) TCGA-D5-6928-01 20 31022441 31022442 - G ASXL1 Frame_Shift_Ins p.G646Wfs*12 0.36 TCGA-D5-6928-01 20 310233 310235 AGT - SOX12 3'UTR 0.16 TCGA-D5-6928-01 20 3128517 3128517 G A FASTKD5 Silent p.C400C 0.13 TCGA-D5-6928-01 20 3128873 3128876 CTAG - FASTKD5 Frame_Shift_Del p.L281Ffs*3 0.17 TCGA-D5-6928-01 20 3145155 3145155 T A LZTS3 Missense_Mutation p.E656V 0.20 tolerated(0.13) benign(0.439) TCGA-D5-6928-01 20 3146698 3146698 A G LZTS3 Silent p.Y256Y 0.14 TCGA-D5-6928-01 20 3218646 3218646 G - SLC4A11 Frame_Shift_Del p.P22Rfs*121 0.30 TCGA-D5-6928-01 20 32340998 32340998 C T ZNF341 Silent p.S170S 0.10 TCGA-D5-6928-01 20 32883314 32883314 G A AHCY Missense_Mutation p.R36W 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.589) TCGA-D5-6928-01 20 330448 330448 G A NRSN2 Missense_Mutation p.R54H 0.24 tolerated(0.81) benign(0.001) TCGA-D5-6928-01 20 33222465 33222465 G T PIGU Silent p.A161A 0.13 TCGA-D5-6928-01 20 33330454 33330454 C T NCOA6 Silent p.A1202A 0.16 TCGA-D5-6928-01 20 33851679 33851679 G A MMP24 Silent p.A301A 0.16 TCGA-D5-6928-01 20 34240746 34240746 G A RBM12 Silent p.P833P 0.12 TCGA-D5-6928-01 20 34241895 34241895 A - RBM12 Frame_Shift_Del p.F450Lfs*13 0.10 TCGA-D5-6928-01 20 34542022 34542022 G - SCAND1 Frame_Shift_Del p.P62Lfs*20 0.16 TCGA-D5-6928-01 20 34778641 34778641 G A EPB41L1 Missense_Mutation p.A408T 0.15 tolerated(0.07) possibly_damaging(0.844) TCGA-D5-6928-01 20 35545175 35545175 C T SAMHD1 Missense_Mutation p.A338T 0.09 tolerated(0.08) possibly_damaging(0.495) TCGA-D5-6928-01 20 3673253 3673253 C T SIGLEC1 Silent p.T1315T 0.18 TCGA-D5-6928-01 20 36775234 36775234 G A TGM2 Silent p.G248G 0.23 TCGA-D5-6928-01 20 3677826 3677826 C A SIGLEC1 Silent p.L762L 0.15 TCGA-D5-6928-01 20 37653986 37653986 C T DHX35 Silent p.P595P 0.25 TCGA-D5-6928-01 20 37662905 37662905 C T DHX35 Missense_Mutation p.A671V 0.19 tolerated(0.89) benign(0.006) TCGA-D5-6928-01 20 3782665 3782665 C T CDC25B Missense_Mutation p.P339L 0.21 deleterious(0.01) probably_damaging(0.924) TCGA-D5-6928-01 20 40113020 40113020 C A CHD6 Missense_Mutation p.K743N 0.13 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 20 42169761 42169761 A G L3MBTL1 Missense_Mutation p.Q839R 0.08 tolerated_low_confidence(0.06) benign(0.145) TCGA-D5-6928-01 20 42826274 42826274 C T OSER1 Silent p.A99A 0.19 TCGA-D5-6928-01 20 43566737 43566737 A G PABPC1L Missense_Mutation p.T561A 0.11 tolerated(0.14) benign(0.004) TCGA-D5-6928-01 20 43625885 43625885 T A STK4 Missense_Mutation p.F257I 0.09 deleterious(0) probably_damaging(0.993) TCGA-D5-6928-01 20 44429711 44429711 A G DNTTIP1 Splice_Site p.X125_splice 0.12 TCGA-D5-6928-01 20 44444142 44444142 G A UBE2C Intron 0.09 TCGA-D5-6928-01 20 44515356 44515356 C T SPATA25 Missense_Mutation p.A162T 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D5-6928-01 20 44526731 44526731 G A CTSA Missense_Mutation p.A466T 0.14 tolerated(1) benign(0.001) TCGA-D5-6928-01 20 44540031 44540031 C A PLTP Missense_Mutation p.G21C 0.11 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 20 44984449 44984449 C A SLC35C2 Nonsense_Mutation p.E134* 0.18 TCGA-D5-6928-01 20 45174370 45174370 C A OCSTAMP Nonsense_Mutation p.E215* 0.21 TCGA-D5-6928-01 20 46318990 46318990 G A SULF2 Missense_Mutation p.T206M 0.19 tolerated(0.66) benign(0.017) TCGA-D5-6928-01 20 4707160 4707160 A T PRND 3'UTR 0.12 TCGA-D5-6928-01 20 48098546 48098546 G T KCNB1 Silent p.R158R 0.13 TCGA-D5-6928-01 20 48257163 48257163 C T B4GALT5 Missense_Mutation p.V216I 0.10 tolerated(0.29) benign(0.044) TCGA-D5-6928-01 20 49219015 49219015 G A FAM65C Missense_Mutation p.T414M 0.38 deleterious(0.01) possibly_damaging(0.832) TCGA-D5-6928-01 20 50244187 50244187 G A ATP9A Silent p.L599L 0.30 TCGA-D5-6928-01 20 50769312 50769312 C T ZFP64 Silent p.T473T 0.13 TCGA-D5-6928-01 20 51870966 51870966 C T TSHZ2 Silent p.R323R 0.19 TCGA-D5-6928-01 20 52198951 52198951 C T ZNF217 Missense_Mutation p.V139I 0.11 tolerated(0.18) possibly_damaging(0.593) TCGA-D5-6928-01 20 55012423 55012423 C - CASS4 Frame_Shift_Del p.P82Hfs*3 0.16 TCGA-D5-6928-01 20 55206427 55206427 C T TFAP2C Missense_Mutation p.S72L 0.15 tolerated(0.48) benign(0.026) TCGA-D5-6928-01 20 57251332 57251332 C T STX16 Silent p.G321G 0.10 TCGA-D5-6928-01 20 57415288 57415288 C T RP4-806M20.3 5'Flank 0.09 TCGA-D5-6928-01 20 57876507 57876507 G T EDN3 Missense_Mutation p.G32V 0.13 deleterious(0.04) possibly_damaging(0.764) TCGA-D5-6928-01 20 58569465 58569465 G A CDH26 Silent p.P529P 0.14 TCGA-D5-6928-01 20 60419757 60419757 C T CDH4 Missense_Mutation p.R204W 0.33 tolerated(0.12) probably_damaging(0.948) TCGA-D5-6928-01 20 60908523 60908523 C T LAMA5 Silent p.L1012L 0.16 TCGA-D5-6928-01 20 60910176 60910176 C T LAMA5 Missense_Mutation p.G795S 0.12 probably_damaging(0.999) TCGA-D5-6928-01 20 60988878 60988878 A G RBBP8NL Missense_Mutation p.M510T 0.14 tolerated(0.63) benign(0) TCGA-D5-6928-01 20 61288394 61288394 C T SLCO4A1 Silent p.R196R 0.21 TCGA-D5-6928-01 20 61458594 61458594 G A COL9A3 Missense_Mutation p.G265D 0.19 deleterious(0) unknown(0) TCGA-D5-6928-01 20 61511050 61511050 C A DIDO1 Missense_Mutation p.R2086S 0.12 probably_damaging(0.994) TCGA-D5-6928-01 20 61526505 61526505 G A DIDO1 Missense_Mutation p.R743C 0.13 probably_damaging(1) TCGA-D5-6928-01 20 61576154 61576154 G A GID8 Missense_Mutation p.A193T 0.13 tolerated(0.46) benign(0.008) TCGA-D5-6928-01 20 61982270 61982270 C T CHRNA4 Missense_Mutation p.V165I 0.11 tolerated(0.25) probably_damaging(0.98) TCGA-D5-6928-01 20 62194374 62194374 C T HELZ2 Missense_Mutation p.R1934Q 0.11 tolerated(0.47) benign(0.007) TCGA-D5-6928-01 20 62201940 62201940 G A HELZ2 Missense_Mutation p.R163C 0.13 tolerated(0.06) benign(0.003) TCGA-D5-6928-01 20 62326887 62326887 G A RTEL1 Intron 0.15 TCGA-D5-6928-01 20 62327178 62327178 C T RTEL1 3'UTR 0.08 TCGA-D5-6928-01 20 62367595 62367595 C T ZGPAT 3'Flank 0.40 TCGA-D5-6928-01 20 62560750 62560750 G A DNAJC5 Missense_Mutation p.A65T 0.16 tolerated(0.23) benign(0.023) TCGA-D5-6928-01 20 62658400 62658400 C T PRPF6 Silent p.C698C 0.12 TCGA-D5-6928-01 20 6759524 6759524 G A BMP2 Missense_Mutation p.G327R 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 20 9417728 9417728 C - PLCB4 Frame_Shift_Del p.P887Lfs*31 0.08 TCGA-D5-6928-01 21 30698954 30698954 G A BACH1 Missense_Mutation p.C270Y 0.12 deleterious(0.04) possibly_damaging(0.48) TCGA-D5-6928-01 21 31066219 31066219 C T GRIK1 Silent p.R94R 0.16 TCGA-D5-6928-01 21 31933581 31933581 C A KRTAP19-7 Missense_Mutation p.G10C 0.13 deleterious_low_confidence(0) unknown(0) TCGA-D5-6928-01 21 32127646 32127646 G A KRTAP21-1 Silent p.G17G 0.17 TCGA-D5-6928-01 21 32201840 32201840 G A KRTAP7-1 RNA 0.16 TCGA-D5-6928-01 21 33057464 33057464 C T SCAF4 Missense_Mutation p.A796T 0.23 unknown(0) TCGA-D5-6928-01 21 34635166 34635166 G T IFNAR2 Missense_Mutation p.E303D 0.10 deleterious(0.03) probably_damaging(0.935) TCGA-D5-6928-01 21 35476425 35476425 T - SLC5A3 3'UTR 0.18 TCGA-D5-6928-01 21 35497680 35497680 C G MRPS6 Missense_Mutation p.L29V 0.19 tolerated(0.07) probably_damaging(0.951) TCGA-D5-6928-01 21 35497685 35497685 G T MRPS6 Missense_Mutation p.M30I 0.15 tolerated(0.07) benign(0.199) TCGA-D5-6928-01 21 37505166 37505166 G A CBR3 5'Flank 0.20 TCGA-D5-6928-01 21 38568141 38568141 C - TTC3 Frame_Shift_Del p.P1796Lfs*9 0.17 TCGA-D5-6928-01 21 40568256 40568256 C T BRWD1 Intron 0.20 TCGA-D5-6928-01 21 40578154 40578155 - T BRWD1 Frame_Shift_Ins p.M1415Nfs*7 0.19 TCGA-D5-6928-01 21 41424010 41424010 G A DSCAM Missense_Mutation p.T1687M 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-D5-6928-01 21 43248537 43248537 G A PRDM15 Missense_Mutation p.R873C 0.22 deleterious(0) probably_damaging(0.982) TCGA-D5-6928-01 21 43824163 43824163 A G UBASH3A Missense_Mutation p.T37A 0.14 tolerated(0.51) benign(0.008) TCGA-D5-6928-01 21 44108055 44108055 G A PDE9A Missense_Mutation p.D57N 0.18 tolerated(0.13) possibly_damaging(0.656) TCGA-D5-6928-01 21 44473932 44473932 C T CBS 3'UTR 0.11 TCGA-D5-6928-01 21 45947217 45947217 C T TSPEAR Silent p.T369T 0.22 TCGA-D5-6928-01 21 45970404 45970404 G A KRTAP10-2 3'UTR 0.16 TCGA-D5-6928-01 21 46233930 46233930 C T SUMO3 Silent p.T37T 0.23 TCGA-D5-6928-01 21 46876302 46876302 G A COL18A1 Intron 0.16 TCGA-D5-6928-01 21 46935681 46935681 G A SLC19A1 Missense_Mutation p.P556L 0.10 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-D5-6928-01 21 47411950 47411950 G - COL6A1 Frame_Shift_Del p.R384Dfs*121 0.32 TCGA-D5-6928-01 21 47676822 47676822 G A MCM3AP Silent p.D1271D 0.16 TCGA-D5-6928-01 21 47697522 47697522 T C MCM3AP Missense_Mutation p.S593G 0.18 tolerated(0.26) benign(0.011) TCGA-D5-6928-01 22 17670908 17670908 G A CECR1 Missense_Mutation p.A299V 0.25 deleterious(0.01) benign(0.001) TCGA-D5-6928-01 22 18769144 18769144 C T GGT3P RNA 0.03 TCGA-D5-6928-01 22 19036120 19036120 T C DGCR2 Missense_Mutation p.D280G 0.13 tolerated(0.16) benign(0.008) TCGA-D5-6928-01 22 19188871 19188871 C T CLTCL1 Missense_Mutation p.R1245H 0.22 deleterious(0.04) benign(0.042) TCGA-D5-6928-01 22 19348774 19348774 C T HIRA Missense_Mutation p.A691T 0.16 tolerated(0.5) benign(0.003) TCGA-D5-6928-01 22 19839750 19839750 C T C22orf29 Missense_Mutation p.R12H 0.13 tolerated_low_confidence(0.22) possibly_damaging(0.614) TCGA-D5-6928-01 22 19968872 19968872 C T ARVCF Missense_Mutation p.R253H 0.12 tolerated(0.12) benign(0.002) TCGA-D5-6928-01 22 20074137 20074137 C T DGCR8 Silent p.G217G 0.20 TCGA-D5-6928-01 22 20458127 20458127 G A RIMBP3 Missense_Mutation p.R1059W 0.09 deleterious(0.04) possibly_damaging(0.562) TCGA-D5-6928-01 22 20760536 20760536 G A ZNF74 Missense_Mutation p.V405M 0.17 tolerated(0.24) probably_damaging(0.997) TCGA-D5-6928-01 22 20786230 20786230 G A SCARF2 Silent p.D73D 0.14 TCGA-D5-6928-01 22 20819490 20819490 C T KLHL22 Missense_Mutation p.R256Q 0.22 tolerated(0.1) benign(0.253) TCGA-D5-6928-01 22 21159269 21159269 G A PI4KA Silent p.D451D 0.21 TCGA-D5-6928-01 22 22989533 22989533 G - GGTLC2 Intron 0.15 TCGA-D5-6928-01 22 23029232 23029232 C A IGLV3-25 5'UTR 0.13 TCGA-D5-6928-01 22 23406102 23406102 C T RTDR1 Missense_Mutation p.A211T 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6928-01 22 23488827 23488827 G - RAB36 Frame_Shift_Del p.P77Lfs*2 0.12 TCGA-D5-6928-01 22 24124560 24124560 A G MMP11 Missense_Mutation p.Y408C 0.21 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 22 24145582 24145582 C T SMARCB1 Nonsense_Mutation p.R201* 0.11 TCGA-D5-6928-01 22 24659537 24659537 G A POM121L9P RNA 0.11 TCGA-D5-6928-01 22 26342203 26342203 G A MYO18B Missense_Mutation p.R1873Q 0.11 deleterious(0.01) benign(0.178) TCGA-D5-6928-01 22 26895444 26895444 C A TFIP11 Nonsense_Mutation p.E319* 0.28 TCGA-D5-6928-01 22 26937481 26937481 C T TPST2 Missense_Mutation p.R39Q 0.17 tolerated_low_confidence(0.58) benign(0) TCGA-D5-6928-01 22 28306975 28306975 C T PITPNB Silent p.T58T 0.14 TCGA-D5-6928-01 22 29121095 29121096 - T CHEK2 Frame_Shift_Ins p.N197Kfs*32 0.16 TCGA-D5-6928-01 22 29708273 29708273 G - GAS2L1 3'Flank 0.20 TCGA-D5-6928-01 22 30688510 30688510 C A TBC1D10A Nonsense_Mutation p.G468* 0.16 TCGA-D5-6928-01 22 30821776 30821776 C T MTFP1 5'UTR 0.21 TCGA-D5-6928-01 22 31662057 31662057 G A LIMK2 Missense_Mutation p.R306Q 0.10 deleterious(0) possibly_damaging(0.879) TCGA-D5-6928-01 22 31799098 31799098 C A DRG1 Missense_Mutation p.L84M 0.13 tolerated(0.1) probably_damaging(0.918) TCGA-D5-6928-01 22 32482280 32482280 C A SLC5A1 Silent p.A365A 0.17 TCGA-D5-6928-01 22 32506234 32506234 G A SLC5A1 3'UTR 0.19 TCGA-D5-6928-01 22 33402491 33402493 AGA - SYN3 In_Frame_Del p.F52del 0.13 TCGA-D5-6928-01 22 37273855 37273855 C T NCF4 3'UTR 0.19 TCGA-D5-6928-01 22 37524095 37524095 G A IL2RB 3'UTR 0.27 TCGA-D5-6928-01 22 37524543 37524543 C T IL2RB Missense_Mutation p.A417T 0.19 tolerated(0.07) benign(0.039) TCGA-D5-6928-01 22 37887201 37887201 G T CARD10 Missense_Mutation p.A1032D 0.11 deleterious_low_confidence(0) benign(0.007) TCGA-D5-6928-01 22 38051313 38051314 - C SH3BP1 Frame_Shift_Ins p.Q579Pfs*81 0.18 TCGA-D5-6928-01 22 38131394 38131394 C T TRIOBP Missense_Mutation p.T1684M 0.15 tolerated_low_confidence(0.68) benign(0.002) TCGA-D5-6928-01 22 38349720 38349720 G A POLR2F 5'UTR 0.21 TCGA-D5-6928-01 22 38524296 38524296 G A PLA2G6 Missense_Mutation p.P443L 0.14 tolerated(0.08) benign(0.001) TCGA-D5-6928-01 22 38612108 38612108 C T MAFF 3'UTR 0.11 TCGA-D5-6928-01 22 38878600 38878601 TC - KDELR3 3'Flank 0.15 TCGA-D5-6928-01 22 39883545 39883545 G T MGAT3 Nonsense_Mutation p.G65* 0.16 TCGA-D5-6928-01 22 41075524 41075524 G A MCHR1 Silent p.T25T 0.12 TCGA-D5-6928-01 22 41633644 41633644 G T CHADL Missense_Mutation p.L478M 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 22 41921263 41921263 G A ACO2 Missense_Mutation p.V558M 0.11 deleterious_low_confidence(0.01) benign(0.153) TCGA-D5-6928-01 22 42043073 42043073 C T XRCC6 Missense_Mutation p.T316I 0.15 tolerated(0.88) benign(0.062) TCGA-D5-6928-01 22 44340650 44340650 C T PNPLA3 Silent p.L398L 0.11 TCGA-D5-6928-01 22 45607892 45607892 T A KIAA0930 Missense_Mutation p.Y59F 0.22 tolerated(0.36) possibly_damaging(0.526) TCGA-D5-6928-01 22 46508537 46508537 C T FLJ27365 3'UTR 0.11 TCGA-D5-6928-01 22 46704798 46704798 G A GTSE1 Silent p.A240A 0.12 TCGA-D5-6928-01 22 46930749 46930749 C T CELSR1 Silent p.A773A 0.19 TCGA-D5-6928-01 22 47068803 47068803 G A GRAMD4 Missense_Mutation p.R383H 0.26 deleterious(0.02) possibly_damaging(0.886) TCGA-D5-6928-01 22 47859106 47859107 - T LL22NC03-75H12.2 Frame_Shift_Ins p.G28Rfs*28 0.11 TCGA-D5-6928-01 22 50528746 50528746 C T MOV10L1 Intron 0.23 TCGA-D5-6928-01 22 50717344 50717344 C T PLXNB2 Missense_Mutation p.D1496N 0.15 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 22 50962557 50962557 C T SCO2 Missense_Mutation p.R95H 0.17 tolerated(0.12) probably_damaging(0.991) TCGA-D5-6928-01 2 100021045 100021045 T G REV1 Missense_Mutation p.K969N 0.14 tolerated(0.27) benign(0.001) TCGA-D5-6928-01 2 102505288 102505288 G - MAP4K4 Frame_Shift_Del p.G1177Efs*5 0.15 TCGA-D5-6928-01 2 103343422 103343422 G A MFSD9 Silent p.S103S 0.19 TCGA-D5-6928-01 2 109399069 109399069 T G RANBP2 Missense_Mutation p.C3040W 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 2 110373643 110373643 A - SOWAHC Frame_Shift_Del 0.13 TCGA-D5-6928-01 2 111408195 111408195 G A BUB1 Missense_Mutation p.P711S 0.16 tolerated(0.41) benign(0.209) TCGA-D5-6928-01 2 111851224 111851224 C A ACOXL Intron 0.14 TCGA-D5-6928-01 2 112942812 112942812 C - FBLN7 Frame_Shift_Del p.Q283Rfs*26 0.09 TCGA-D5-6928-01 2 11332380 11332380 G T ROCK2 Missense_Mutation p.P1353T 0.19 tolerated(0.31) probably_damaging(0.987) TCGA-D5-6928-01 2 113588010 113588010 C T IL1B Missense_Mutation p.M246I 0.13 tolerated(0.07) benign(0.263) TCGA-D5-6928-01 2 114697556 114697556 C T ACTR3 Silent p.G187G 0.13 TCGA-D5-6928-01 2 121554970 121554970 T C GLI2 Missense_Mutation p.F25S 0.12 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D5-6928-01 2 121726331 121726331 C T GLI2 Missense_Mutation p.R229C 0.17 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 2 128180498 128180500 CTT - PROC In_Frame_Del p.F82del 0.13 TCGA-D5-6928-01 2 128367270 128367270 G A MYO7B Missense_Mutation p.E1002K 0.16 tolerated(0.09) possibly_damaging(0.634) TCGA-D5-6928-01 2 128387231 128387231 C T MYO7B Missense_Mutation p.L1520F 0.12 tolerated(1) benign(0.048) TCGA-D5-6928-01 2 128464082 128464082 G A WDR33 Missense_Mutation p.R1276C 0.11 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-D5-6928-01 2 12880722 12880722 G A TRIB2 Silent p.S278S 0.19 TCGA-D5-6928-01 2 128890754 128890754 T C UGGT1 Missense_Mutation p.W473R 0.15 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 2 131487051 131487051 C A GPR148 Missense_Mutation p.S109R 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-D5-6928-01 2 131797657 131797657 C T ARHGEF4 Silent p.D272D 0.11 TCGA-D5-6928-01 2 135884175 135884175 C T RAB3GAP1 Missense_Mutation p.P308S 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-D5-6928-01 2 136567187 136567187 G A LCT Silent p.G910G 0.22 TCGA-D5-6928-01 2 137990553 137990553 C T THSD7B Missense_Mutation p.T667I 0.14 deleterious(0) possibly_damaging(0.607) TCGA-D5-6928-01 2 141625243 141625243 T C LRP1B Missense_Mutation p.T1499A 0.16 benign(0.001) TCGA-D5-6928-01 2 1457594 1457594 C T TPO Missense_Mutation p.P204L 0.19 tolerated(1) benign(0.031) TCGA-D5-6928-01 2 15432858 15432858 G A NBAS Silent p.T1610T 0.15 TCGA-D5-6928-01 2 15496460 15496460 C T NBAS Missense_Mutation p.A1300T 0.14 deleterious(0.04) possibly_damaging(0.9) TCGA-D5-6928-01 2 157425896 157425896 G A GPD2 Missense_Mutation p.R441Q 0.17 deleterious(0.01) probably_damaging(0.971) TCGA-D5-6928-01 2 158275056 158275056 G A CYTIP Nonsense_Mutation p.Q198* 0.18 TCGA-D5-6928-01 2 159481540 159481540 G A PKP4 Missense_Mutation p.D252N 0.13 tolerated(0.08) benign(0.197) TCGA-D5-6928-01 2 163134133 163134133 T C IFIH1 Silent p.Q612Q 0.11 TCGA-D5-6928-01 2 164466354 164466354 A G FIGN Missense_Mutation p.V663A 0.11 tolerated(0.62) benign(0.01) TCGA-D5-6928-01 2 166802181 166802181 T A TTC21B Missense_Mutation p.E94D 0.15 tolerated(0.13) benign(0.101) TCGA-D5-6928-01 2 167313548 167313548 A - SCN7A Frame_Shift_Del p.F374Lfs*4 0.13 TCGA-D5-6928-01 2 168105425 168105425 C T XIRP2 Missense_Mutation p.S2508L 0.12 benign(0.027) TCGA-D5-6928-01 2 168106361 168106361 A - XIRP2 Frame_Shift_Del p.N2822Ifs*6 0.13 TCGA-D5-6928-01 2 168107293 168107293 C T XIRP2 Nonsense_Mutation p.R3131* 0.16 TCGA-D5-6928-01 2 169826049 169826049 G A ABCB11 Missense_Mutation p.H608Y 0.22 deleterious(0) benign(0.002) TCGA-D5-6928-01 2 170506882 170506882 T - CCDC173 Frame_Shift_Del p.N370Tfs*5 0.16 TCGA-D5-6928-01 2 171371485 171371485 G - MYO3B Frame_Shift_Del p.G1143Efs*93 0.18 TCGA-D5-6928-01 2 172195940 172195940 T G METTL8 Missense_Mutation p.K120N 0.17 tolerated(0.7) benign(0.005) TCGA-D5-6928-01 2 172546714 172546714 C T DYNC1I2 Nonsense_Mutation p.R17* 0.10 TCGA-D5-6928-01 2 172604382 172604382 A G DYNC1I2 Missense_Mutation p.T634A 0.19 tolerated(0.53) benign(0.001) TCGA-D5-6928-01 2 172945101 172945101 G A METAP1D Silent p.A325A 0.13 TCGA-D5-6928-01 2 174062705 174062705 A - MLTK Intron 0.15 TCGA-D5-6928-01 2 174820156 174820156 G A SP3 Nonsense_Mutation p.Q362* 0.14 TCGA-D5-6928-01 2 175809628 175809628 G T CHN1 Silent p.T34T 0.19 TCGA-D5-6928-01 2 176987654 176987654 C T HOXD9 Missense_Mutation p.A53V 0.14 tolerated(0.3) benign(0.211) TCGA-D5-6928-01 2 178482366 178482366 G A TTC30A Missense_Mutation p.T355I 0.16 deleterious(0.01) benign(0.172) TCGA-D5-6928-01 2 179417064 179417064 G A TTN Missense_Mutation p.T30188I 0.16 TCGA-D5-6928-01 2 179439512 179439512 G A TTN Missense_Mutation p.R23783C 0.14 TCGA-D5-6928-01 2 179452642 179452642 T G TTN Missense_Mutation p.K21164N 0.16 TCGA-D5-6928-01 2 179528765 179528765 T - TTN Frame_Shift_Del p.K12114Sfs*44 0.15 TCGA-D5-6928-01 2 179614643 179614643 G T TTN Intron 0.13 TCGA-D5-6928-01 2 179621199 179621199 G A TTN Silent p.D3668D 0.18 TCGA-D5-6928-01 2 179666956 179666956 G A TTN Silent p.P68P 0.29 TCGA-D5-6928-01 2 17997995 17997995 G A MSGN1 Silent p.E70E 0.13 TCGA-D5-6928-01 2 180858077 180858077 G A CWC22 5'UTR 0.17 TCGA-D5-6928-01 2 182786777 182786778 - TT SSFA2 Frame_Shift_Ins p.S1107Ffs*37 0.13 TCGA-D5-6928-01 2 191844524 191844524 T - STAT1 Frame_Shift_Del p.K567Nfs*25 0.14 TCGA-D5-6928-01 2 191931220 191931220 G A STAT4 Missense_Mutation p.A189V 0.17 tolerated(0.16) benign(0.003) TCGA-D5-6928-01 2 196825157 196825157 C A DNAH7 Missense_Mutation p.E906D 0.10 tolerated(0.43) benign(0.005) TCGA-D5-6928-01 2 197863645 197863645 T C ANKRD44 Missense_Mutation p.Q859R 0.18 tolerated(0.23) benign(0.001) TCGA-D5-6928-01 2 20174360 20174360 G T WDR35 Missense_Mutation p.T202N 0.10 tolerated(0.27) possibly_damaging(0.677) TCGA-D5-6928-01 2 201746177 201746177 C A PPIL3 Missense_Mutation p.K73N 0.17 tolerated(0.28) benign(0.019) TCGA-D5-6928-01 2 202149799 202149799 T - CASP8 Frame_Shift_Del p.F415Lfs*26 0.20 TCGA-D5-6928-01 2 203560652 203560652 G A FAM117B Missense_Mutation p.R217H 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-D5-6928-01 2 204009399 204009399 A G NBEAL1 Missense_Mutation p.Y1613C 0.16 deleterious(0.02) probably_damaging(0.926) TCGA-D5-6928-01 2 206988981 206988981 T C NDUFS1 Silent p.S718S 0.22 TCGA-D5-6928-01 2 207009721 207009721 G A NDUFS1 Missense_Mutation p.A270V 0.12 deleterious(0) possibly_damaging(0.854) TCGA-D5-6928-01 2 208632417 208632418 - C FZD5 Frame_Shift_Ins p.N350Qfs*249 0.14 TCGA-D5-6928-01 2 212812259 212812259 C T ERBB4 Missense_Mutation p.R106H 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 2 215593361 215593361 C T BARD1 3'UTR 0.20 TCGA-D5-6928-01 2 215646085 215646085 T - BARD1 Frame_Shift_Del p.D172Mfs*40 0.13 TCGA-D5-6928-01 2 215819992 215819992 A - ABCA12 Frame_Shift_Del p.F2109Lfs*25 0.18 TCGA-D5-6928-01 2 215880276 215880276 G A ABCA12 Nonsense_Mutation p.Q632* 0.10 TCGA-D5-6928-01 2 216236721 216236722 GA - FN1 Frame_Shift_Del p.Q2209Dfs*13 0.11 TCGA-D5-6928-01 2 216293048 216293048 A T FN1 Missense_Mutation p.D233E 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-D5-6928-01 2 217528810 217528810 A G IGFBP2 Missense_Mutation p.T321A 0.19 tolerated_low_confidence(0.56) benign(0) TCGA-D5-6928-01 2 219140771 219140771 A G TMBIM1 Missense_Mutation p.L256P 0.11 deleterious(0) probably_damaging(0.949) TCGA-D5-6928-01 2 219248982 219248982 G T SLC11A1 Missense_Mutation p.R56L 0.17 deleterious(0) probably_damaging(0.919) TCGA-D5-6928-01 2 219449364 219449364 T - RQCD1 Frame_Shift_Del p.L119Cfs*29 0.20 TCGA-D5-6928-01 2 219527271 219527271 T C BCS1L Missense_Mutation p.L253P 0.23 deleterious(0) probably_damaging(0.981) TCGA-D5-6928-01 2 219602435 219602435 C T TTLL4 Silent p.G12G 0.09 TCGA-D5-6928-01 2 219613611 219613611 G A TTLL4 Missense_Mutation p.A852T 0.16 deleterious(0.04) benign(0.075) TCGA-D5-6928-01 2 219892999 219892999 G - CCDC108 Frame_Shift_Del p.P592Lfs*8 0.16 TCGA-D5-6928-01 2 220349250 220349250 G A SPEG Silent p.S2355S 0.16 TCGA-D5-6928-01 2 228846310 228846310 T - SPHKAP 3'UTR 0.40 TCGA-D5-6928-01 2 231943377 231943377 C T PSMD1 Missense_Mutation p.A359V 0.09 tolerated(0.13) benign(0.082) TCGA-D5-6928-01 2 232263174 232263174 C A B3GNT7 Silent p.T248T 0.13 TCGA-D5-6928-01 2 233681615 233681615 C T GIGYF2 Missense_Mutation p.A769V 0.13 unknown(0) TCGA-D5-6928-01 2 233710543 233710543 C T GIGYF2 Missense_Mutation p.T1157M 0.19 unknown(0) TCGA-D5-6928-01 2 234070405 234070407 GAA - INPP5D In_Frame_Del p.K380del 0.23 TCGA-D5-6928-01 2 234591181 234591181 G A UGT1A7 Missense_Mutation p.A200T 0.18 tolerated(0.3) benign(0.055) TCGA-D5-6928-01 2 235951728 235951728 T C SH3BP4 Missense_Mutation p.F772S 0.12 deleterious(0) probably_damaging(0.987) TCGA-D5-6928-01 2 238275612 238275612 C T COL6A3 Missense_Mutation p.D1740N 0.17 possibly_damaging(0.747) TCGA-D5-6928-01 2 238785975 238785975 G A RAMP1 Silent p.T54T 0.18 TCGA-D5-6928-01 2 239002528 239002528 C T SCLY Silent p.C324C 0.13 TCGA-D5-6928-01 2 239009135 239009135 C T ESPNL Silent p.G25G 0.12 TCGA-D5-6928-01 2 239039002 239039002 G A ESPNL Silent p.T549T 0.32 TCGA-D5-6928-01 2 240033317 240033317 C T HDAC4 Missense_Mutation p.G623D 0.21 tolerated(0.07) possibly_damaging(0.585) TCGA-D5-6928-01 2 240969278 240969278 G A OR6B2 Missense_Mutation p.T190M 0.17 tolerated(0.1) benign(0.045) TCGA-D5-6928-01 2 240969460 240969460 C T OR6B2 Silent p.P129P 0.16 TCGA-D5-6928-01 2 241078658 241078658 C T OTOS Missense_Mutation p.A67T 0.14 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 2 241536202 241536203 - G CAPN10 Frame_Shift_Ins p.S532Qfs*38 0.19 TCGA-D5-6928-01 2 242157243 242157243 C A ANO7 Silent p.A759A 0.20 TCGA-D5-6928-01 2 242380760 242380760 A G FARP2 Silent p.P400P 0.13 TCGA-D5-6928-01 2 242664502 242664502 C T ING5 3'UTR 0.19 TCGA-D5-6928-01 2 242694497 242694497 G A D2HGDH Intron 0.21 TCGA-D5-6928-01 2 242743363 242743363 G A GAL3ST2 Missense_Mutation p.A327T 0.23 deleterious(0.04) benign(0.011) TCGA-D5-6928-01 2 24400686 24400686 G T FAM228A Missense_Mutation p.D37Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 2 25048969 25048969 G T ADCY3 Missense_Mutation p.S841Y 0.10 tolerated(0.28) benign(0.01) TCGA-D5-6928-01 2 25505484 25505484 C T DNMT3A Missense_Mutation p.D92N 0.22 tolerated(0.18) benign(0.057) TCGA-D5-6928-01 2 26533757 26533757 C A GPR113 Missense_Mutation p.A947S 0.23 deleterious(0.04) probably_damaging(0.924) TCGA-D5-6928-01 2 27303605 27303605 G A EMILIN1 Missense_Mutation p.R99H 0.15 probably_damaging(0.998) TCGA-D5-6928-01 2 27305767 27305767 G A EMILIN1 Missense_Mutation p.R443Q 0.21 benign(0.001) TCGA-D5-6928-01 2 27460732 27460732 C T CAD Silent p.S1570S 0.21 TCGA-D5-6928-01 2 277274 277274 C A ACP1 Nonsense_Mutation p.C149* 0.19 TCGA-D5-6928-01 2 28521301 28521301 A - BRE Frame_Shift_Del p.N346Ifs*102 0.20 TCGA-D5-6928-01 2 28785923 28785923 C T PLB1 Missense_Mutation p.P388L 0.12 tolerated(0.09) benign(0.226) TCGA-D5-6928-01 2 28999758 28999758 G A PPP1CB Missense_Mutation p.A32T 0.18 tolerated_low_confidence(0.47) benign(0) TCGA-D5-6928-01 2 29247132 29247132 C T FAM179A Missense_Mutation p.A582V 0.15 deleterious(0) benign(0.331) TCGA-D5-6928-01 2 29419639 29419639 G T ALK Silent p.T1387T 0.16 TCGA-D5-6928-01 2 32476416 32476416 T C NLRC4 Missense_Mutation p.K173E 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 2 32824826 32824826 G T BIRC6 Silent p.A4617A 0.18 TCGA-D5-6928-01 2 3391505 3391505 T A TRAPPC12 Missense_Mutation p.D37E 0.14 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D5-6928-01 2 36775669 36775669 C A CRIM1 Missense_Mutation p.P979H 0.17 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 2 38297805 38297805 T A CYP1B1 3'UTR 0.17 TCGA-D5-6928-01 2 42997656 42997656 C T HAAO Silent p.T139T 0.17 TCGA-D5-6928-01 2 43452512 43452512 C - ZFP36L2 Frame_Shift_Del p.G144Afs*43 0.18 TCGA-D5-6928-01 2 43520182 43520182 G A THADA Missense_Mutation p.R1537W 0.12 deleterious(0.01) possibly_damaging(0.462) TCGA-D5-6928-01 2 44508601 44508601 G A SLC3A1 Missense_Mutation p.R229Q 0.17 tolerated(0.15) benign(0.089) TCGA-D5-6928-01 2 46739256 46739256 G A ATP6V1E2 Nonsense_Mutation p.R199* 0.18 TCGA-D5-6928-01 2 46770919 46770919 T C RHOQ Missense_Mutation p.Y57H 0.21 tolerated(0.27) benign(0.032) TCGA-D5-6928-01 2 46988374 46988374 T - SOCS5 3'UTR 0.12 TCGA-D5-6928-01 2 48915171 48915172 - A LHCGR Frame_Shift_Ins p.A589Cfs*17 0.17 TCGA-D5-6928-01 2 49381629 49381629 C T FSHR 5'UTR 0.16 TCGA-D5-6928-01 2 54877007 54877007 C T SPTBN1 Missense_Mutation p.R1820C 0.12 deleterious(0.02) probably_damaging(0.961) TCGA-D5-6928-01 2 55071331 55071331 C T EML6 Missense_Mutation p.A332V 0.11 deleterious(0.01) possibly_damaging(0.48) TCGA-D5-6928-01 2 55746864 55746864 C A CCDC104 5'UTR 0.12 TCGA-D5-6928-01 2 5833240 5833240 G A SOX11 Silent p.S129S 0.38 TCGA-D5-6928-01 2 5841246 5841246 C T SOX11 3'UTR 0.12 TCGA-D5-6928-01 2 60688199 60688200 - C BCL11A Frame_Shift_Ins p.L617Pfs*18 0.13 TCGA-D5-6928-01 2 61149239 61149239 A G REL Missense_Mutation p.M477V 0.13 tolerated_low_confidence(0.82) benign(0.002) TCGA-D5-6928-01 2 7036130 7036130 C T RSAD2 3'UTR 0.15 TCGA-D5-6928-01 2 71304726 71304726 C T NAGK Silent p.C314C 0.12 TCGA-D5-6928-01 2 71429650 71429650 G A PAIP2B Missense_Mutation p.H24Y 0.18 tolerated(0.13) benign(0.178) TCGA-D5-6928-01 2 71650829 71650829 G A ZNF638 Silent p.K1395K 0.17 TCGA-D5-6928-01 2 73115673 73115673 A G SPR Missense_Mutation p.M179V 0.13 deleterious(0) probably_damaging(0.988) TCGA-D5-6928-01 2 74724863 74724863 C T LBX2 3'UTR 0.20 TCGA-D5-6928-01 2 74725242 74725242 G A LBX2 Nonsense_Mutation p.R133* 0.19 TCGA-D5-6928-01 2 77746390 77746390 G T LRRTM4 Missense_Mutation p.A202D 0.07 deleterious(0.01) probably_damaging(0.975) TCGA-D5-6928-01 2 80085164 80085164 C T CTNNA2 Silent p.S108S 0.14 TCGA-D5-6928-01 2 84908601 84908601 G A DNAH6 Missense_Mutation p.A2289T 0.17 tolerated(0.09) possibly_damaging(0.642) TCGA-D5-6928-01 2 86254497 86254497 G A POLR1A 3'UTR 0.19 TCGA-D5-6928-01 2 88383924 88383924 G A SMYD1 Missense_Mutation p.R76H 0.11 deleterious(0.01) probably_damaging(0.97) TCGA-D5-6928-01 2 88396134 88396134 G A SMYD1 Missense_Mutation p.G240D 0.20 tolerated(0.4) benign(0.241) TCGA-D5-6928-01 2 88747861 88747861 G A FOXI3 RNA 0.12 TCGA-D5-6928-01 2 89156904 89156904 G A IGKC Silent p.V98V 0.16 TCGA-D5-6928-01 2 89246915 89246915 G A IGKV1-5 Silent p.S85S 0.15 TCGA-D5-6928-01 2 8934074 8934074 C T KIDINS220 Missense_Mutation p.R381Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 2 89416929 89416929 G A IGKV1-17 Silent p.S85S 0.16 TCGA-D5-6928-01 2 90044135 90044135 G A IGKV2D-24 Missense_Mutation p.S19N 0.16 tolerated(0.15) benign(0.02) TCGA-D5-6928-01 2 95481319 95481319 T C ANKRD20A8P RNA 0.15 TCGA-D5-6928-01 2 96781519 96781519 G A ADRA2B Missense_Mutation p.R124C 0.17 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 2 99169315 99169315 C T INPP4A Silent p.I415I 0.13 TCGA-D5-6928-01 2 99448925 99448925 C - KIAA1211L Frame_Shift_Del p.L143Ffs*11 0.17 TCGA-D5-6928-01 3 10136922 10136922 C T FANCD2 Silent p.D1334D 0.12 TCGA-D5-6928-01 3 101389944 101389945 - A ZBTB11 Intron 0.11 TCGA-D5-6928-01 3 105377875 105377875 G A CBLB Missense_Mutation p.A963V 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D5-6928-01 3 107492402 107492402 G T BBX Nonsense_Mutation p.E612* 0.21 TCGA-D5-6928-01 3 108272570 108272570 C T KIAA1524 Missense_Mutation p.A778T 0.11 tolerated(0.18) benign(0.003) TCGA-D5-6928-01 3 10861469 10861469 T - SLC6A11 Frame_Shift_Del p.Y157Tfs*2 0.14 TCGA-D5-6928-01 3 108819278 108819278 G A MORC1 Silent p.G100G 0.14 TCGA-D5-6928-01 3 111313387 111313387 G A ZBED2 5'UTR 0.15 TCGA-D5-6928-01 3 113380050 113380050 C A KIAA2018 Missense_Mutation p.S160I 0.11 possibly_damaging(0.534) TCGA-D5-6928-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.11 TCGA-D5-6928-01 3 119263654 119263654 A G CD80 Missense_Mutation p.V54A 0.16 deleterious(0) benign(0.383) TCGA-D5-6928-01 3 119582306 119582306 A G GSK3B Silent p.N365N 0.14 TCGA-D5-6928-01 3 121134716 121134716 G T STXBP5L Missense_Mutation p.D1067Y 0.09 deleterious(0) probably_damaging(0.969) TCGA-D5-6928-01 3 122002866 122002866 G A CASR Missense_Mutation p.V699M 0.17 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 3 122335938 122335938 T C PARP15 Silent p.A309A 0.12 TCGA-D5-6928-01 3 122978410 122978410 C A SEC22A Missense_Mutation p.L233I 0.14 tolerated(0.57) benign(0.036) TCGA-D5-6928-01 3 123699264 123699264 G A ROPN1 Missense_Mutation p.A22V 0.11 deleterious(0) benign(0.108) TCGA-D5-6928-01 3 124165070 124165070 C T KALRN Missense_Mutation p.R1124W 0.21 deleterious(0) probably_damaging(0.968) TCGA-D5-6928-01 3 124538604 124538605 - T ITGB5 Frame_Shift_Ins p.N340Kfs*34 0.18 TCGA-D5-6928-01 3 124721144 124721144 A - HEG1 Frame_Shift_Del p.S1105Qfs*21 0.11 TCGA-D5-6928-01 3 126724979 126724979 C T PLXNA1 Missense_Mutation p.A652V 0.12 tolerated(1) possibly_damaging(0.783) TCGA-D5-6928-01 3 127783831 127783831 T C SEC61A1 Missense_Mutation p.M243T 0.20 tolerated(0.84) benign(0.002) TCGA-D5-6928-01 3 127980996 127980996 G A EEFSEC Missense_Mutation p.V184M 0.19 deleterious(0) probably_damaging(0.981) TCGA-D5-6928-01 3 12838209 12838209 G A CAND2 5'UTR 0.22 TCGA-D5-6928-01 3 132379447 132379447 G T UBA5 Missense_Mutation p.E22D 0.15 tolerated(0.41) benign(0.028) TCGA-D5-6928-01 3 133666103 133666103 G - SLCO2A1 Frame_Shift_Del p.P431Lfs*49 0.10 TCGA-D5-6928-01 3 1337314 1337314 A G CNTN6 Missense_Mutation p.N162D 0.18 tolerated(0.12) benign(0.243) TCGA-D5-6928-01 3 13544426 13544426 T C HDAC11 Missense_Mutation p.Y199H 0.12 deleterious(0) probably_damaging(0.988) TCGA-D5-6928-01 3 140407155 140407155 A G TRIM42 Missense_Mutation p.N544S 0.15 tolerated(0.83) benign(0.001) TCGA-D5-6928-01 3 14163492 14163492 G T CHCHD4 5'UTR 0.12 TCGA-D5-6928-01 3 14199628 14199628 G A XPC Silent p.Y585Y 0.11 TCGA-D5-6928-01 3 142030496 142030496 C T XRN1 Missense_Mutation p.A1660T 0.08 tolerated_low_confidence(0.45) benign(0.001) TCGA-D5-6928-01 3 142681978 142681978 C T PAQR9 Silent p.P67P 0.17 TCGA-D5-6928-01 3 143708360 143708360 G A C3orf58 Missense_Mutation p.E324K 0.14 tolerated(1) benign(0.061) TCGA-D5-6928-01 3 14526471 14526471 G A SLC6A6 Missense_Mutation p.A607T 0.13 tolerated_low_confidence(0.7) benign(0) TCGA-D5-6928-01 3 14548483 14548483 G T GRIP2 RNA 0.16 TCGA-D5-6928-01 3 14563203 14563203 G A GRIP2 RNA 0.11 TCGA-D5-6928-01 3 147106456 147106456 G A ZIC4 3'UTR 0.22 TCGA-D5-6928-01 3 147106561 147106561 C T ZIC4 3'UTR 0.11 TCGA-D5-6928-01 3 147128529 147128529 C T ZIC1 Silent p.A210A 0.14 TCGA-D5-6928-01 3 148765849 148765849 G A HLTF Missense_Mutation p.R620C 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 3 150804586 150804586 G A MED12L 5'Flank 0.18 TCGA-D5-6928-01 3 154042124 154042124 C A DHX36 Missense_Mutation p.G28W 0.10 deleterious_low_confidence(0.03) probably_damaging(0.965) TCGA-D5-6928-01 3 154146908 154146908 G A GPR149 Missense_Mutation p.A166V 0.16 tolerated(0.74) possibly_damaging(0.507) TCGA-D5-6928-01 3 154832854 154832854 G T MME Missense_Mutation p.G90C 0.10 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 3 157146171 157146171 C A VEPH1 Missense_Mutation p.Q212H 0.15 tolerated(0.19) possibly_damaging(0.764) TCGA-D5-6928-01 3 159976209 159976209 C T IFT80 3'UTR 0.11 TCGA-D5-6928-01 3 160474440 160474440 T C PPM1L Missense_Mutation p.L115P 0.23 tolerated(0.21) benign(0.012) TCGA-D5-6928-01 3 169896569 169896569 C T PHC3 Missense_Mutation p.A58T 0.11 tolerated(0.89) benign(0.183) TCGA-D5-6928-01 3 170184762 170184762 A - SLC7A14 3'UTR 0.12 TCGA-D5-6928-01 3 178742965 178742965 G A ZMAT3 Missense_Mutation p.A237V 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-D5-6928-01 3 179341727 179341727 C T NDUFB5 Nonsense_Mutation p.R157* 0.13 TCGA-D5-6928-01 3 179533726 179533726 T - PEX5L Frame_Shift_Del p.R336Gfs*2 0.12 TCGA-D5-6928-01 3 183855693 183855693 C T EIF2B5 Missense_Mutation p.R172W 0.10 deleterious(0) probably_damaging(0.959) TCGA-D5-6928-01 3 184073510 184073510 G - CLCN2 Frame_Shift_Del p.P381Lfs*35 0.16 TCGA-D5-6928-01 3 184099350 184099350 G A CHRD Missense_Mutation p.R150H 0.10 deleterious(0.01) possibly_damaging(0.568) TCGA-D5-6928-01 3 184297302 184297302 C T EPHB3 Silent p.T613T 0.15 TCGA-D5-6928-01 3 18462303 18462303 G A SATB1 Nonsense_Mutation p.Q53* 0.15 TCGA-D5-6928-01 3 185367249 185367249 G A IGF2BP2 Missense_Mutation p.A512V 0.16 tolerated(0.7) possibly_damaging(0.746) TCGA-D5-6928-01 3 186338468 186338468 G A AHSG Missense_Mutation p.A285T 0.15 tolerated(0.58) benign(0.013) TCGA-D5-6928-01 3 187386766 187386766 G A SST 3'UTR 0.19 TCGA-D5-6928-01 3 190985984 190985984 G T UTS2B 3'UTR 0.28 TCGA-D5-6928-01 3 192126163 192126163 G A FGF12 5'UTR 0.25 TCGA-D5-6928-01 3 194180534 194180535 TG - ATP13A3 Frame_Shift_Del p.Q131Dfs*2 0.13 TCGA-D5-6928-01 3 195507310 195507310 G T MUC4 Missense_Mutation p.P3714H 0.08 possibly_damaging(0.897) TCGA-D5-6928-01 3 195513284 195513284 T C MUC4 Missense_Mutation p.T1723A 0.08 possibly_damaging(0.903) TCGA-D5-6928-01 3 196159253 196159254 - C UBXN7 Frame_Shift_Ins p.S7Lfs*22 0.21 TCGA-D5-6928-01 3 196435440 196435440 C A CEP19 Missense_Mutation p.R34L 0.15 deleterious(0) possibly_damaging(0.822) TCGA-D5-6928-01 3 196744142 196744142 C A MFI2 Missense_Mutation p.W244C 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 3 197593040 197593040 G A LRCH3 Missense_Mutation p.R608H 0.16 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 3 19974964 19974964 T C EFHB Missense_Mutation p.N183D 0.19 tolerated_low_confidence(0.28) benign(0) TCGA-D5-6928-01 3 20181849 20181851 AGA - KAT2B In_Frame_Del p.K667del 0.10 TCGA-D5-6928-01 3 25647591 25647591 T - TOP2B Frame_Shift_Del p.S1436Vfs*41 0.10 TCGA-D5-6928-01 3 36756955 36756955 G A DCLK3 Missense_Mutation p.A604V 0.27 deleterious(0) probably_damaging(0.977) TCGA-D5-6928-01 3 36898302 36898302 G A TRANK1 Missense_Mutation p.R927W 0.14 deleterious(0) probably_damaging(0.981) TCGA-D5-6928-01 3 37170568 37170568 G A LRRFIP2 Nonsense_Mutation p.R55* 0.13 TCGA-D5-6928-01 3 38181933 38181933 A C MYD88 Missense_Mutation p.Q186P 0.15 tolerated(0.24) possibly_damaging(0.517) TCGA-D5-6928-01 3 38355272 38355272 C T SLC22A14 Silent p.G406G 0.17 TCGA-D5-6928-01 3 3889142 3889142 T - LRRN1 3'UTR 0.16 TCGA-D5-6928-01 3 39228299 39228299 G A XIRP1 Nonsense_Mutation p.Q880* 0.20 TCGA-D5-6928-01 3 40529022 40529022 G A ZNF619 Missense_Mutation p.E381K 0.14 deleterious(0.05) probably_damaging(0.993) TCGA-D5-6928-01 3 42908364 42908372 AGATTGATT GATTGA ACKR2 3'UTR 0.14 TCGA-D5-6928-01 3 43122404 43122404 G A POMGNT2 Missense_Mutation p.P174S 0.15 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 3 4354875 4354875 C T SETMAR Silent p.G150G 0.21 TCGA-D5-6928-01 3 44685172 44685173 GT - ZNF197 Frame_Shift_Del p.C851Wfs*12 0.11 TCGA-D5-6928-01 3 44763184 44763184 A G ZNF502 Missense_Mutation p.E292G 0.11 deleterious(0) probably_damaging(0.992) TCGA-D5-6928-01 3 44775909 44775909 G A ZNF501 5'UTR 0.18 TCGA-D5-6928-01 3 44951816 44951817 - A TGM4 Frame_Shift_Ins p.L523Tfs*3 0.11 TCGA-D5-6928-01 3 46307955 46307956 TC - CCR3 3'UTR 0.21 TCGA-D5-6928-01 3 47039707 47039707 G A NBEAL2 Missense_Mutation p.V1037M 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-D5-6928-01 3 48309840 48309840 G A ZNF589 Missense_Mutation p.C220Y 0.19 tolerated(0.34) benign(0.025) TCGA-D5-6928-01 3 48453983 48453983 C T PLXNB1 Missense_Mutation p.R1634H 0.30 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 3 48465485 48465485 C - PLXNB1 Frame_Shift_Del p.G179Vfs*41 0.24 TCGA-D5-6928-01 3 48627928 48627928 C T COL7A1 Missense_Mutation p.A624T 0.15 unknown(0) TCGA-D5-6928-01 3 48630626 48630628 GAA - COL7A1 In_Frame_Del p.F197del 0.13 TCGA-D5-6928-01 3 48689976 48689976 G A CELSR3 Missense_Mutation p.A1882V 0.10 tolerated(0.33) benign(0.036) TCGA-D5-6928-01 3 48725558 48725558 C A IP6K2 3'UTR 0.17 TCGA-D5-6928-01 3 49064269 49064269 G A IMPDH2 Missense_Mutation p.R224W 0.13 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 3 49722251 49722251 C T MST1 Silent p.E563E 0.12 TCGA-D5-6928-01 3 49869466 49869466 C T TRAIP Missense_Mutation p.R307Q 0.12 tolerated(0.42) benign(0.003) TCGA-D5-6928-01 3 49898376 49898376 A C CAMKV Missense_Mutation p.L213R 0.17 deleterious(0.01) benign(0.314) TCGA-D5-6928-01 3 49932636 49932636 G A MST1R Missense_Mutation p.R1079W 0.26 tolerated(0.06) benign(0.004) TCGA-D5-6928-01 3 50229178 50229178 C T GNAT1 Missense_Mutation p.A7V 0.15 tolerated(0.08) benign(0.138) TCGA-D5-6928-01 3 50231244 50231244 G A GNAT1 Missense_Mutation p.V170M 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 3 50334179 50334179 G T NAT6 Missense_Mutation p.P261H 0.12 deleterious(0.04) probably_damaging(0.973) TCGA-D5-6928-01 3 50388901 50388901 C A XXcos-LUCA11.5 Silent p.R13R 0.21 TCGA-D5-6928-01 3 51315089 51315089 C T DOCK3 Silent p.D909D 0.19 TCGA-D5-6928-01 3 51708389 51708389 C A TEX264 Silent p.A23A 0.20 TCGA-D5-6928-01 3 51995316 51995316 C T PCBP4 5'UTR 0.12 TCGA-D5-6928-01 3 52245525 52245525 C T ALAS1 Silent p.G519G 0.11 TCGA-D5-6928-01 3 52256178 52256178 G - TLR9 Frame_Shift_Del p.G873Afs*37 0.11 TCGA-D5-6928-01 3 52257576 52257576 G A TLR9 Silent p.G406G 0.13 TCGA-D5-6928-01 3 52259642 52259642 G A TLR9 5'UTR 0.27 TCGA-D5-6928-01 3 52269046 52269046 G A TWF2 Silent p.D34D 0.20 TCGA-D5-6928-01 3 52417507 52417507 C T DNAH1 Missense_Mutation p.R2683W 0.22 probably_damaging(0.988) TCGA-D5-6928-01 3 52440885 52440885 G A BAP1 Missense_Mutation p.R207W 0.17 deleterious(0.01) possibly_damaging(0.791) TCGA-D5-6928-01 3 52554110 52554110 C T STAB1 Missense_Mutation p.R1796W 0.13 deleterious(0) probably_damaging(0.932) TCGA-D5-6928-01 3 52816191 52816191 T A ITIH1 Missense_Mutation p.F280I 0.13 deleterious(0) probably_damaging(0.985) TCGA-D5-6928-01 3 53835355 53835355 C T CACNA1D Missense_Mutation p.R1791W 0.12 tolerated_low_confidence(0.19) benign(0.365) TCGA-D5-6928-01 3 53883730 53883730 T C IL17RB Missense_Mutation p.L45S 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 3 53891663 53891663 G A IL17RB Silent p.T231T 0.08 TCGA-D5-6928-01 3 54962005 54962005 C T LRTM1 5'UTR 0.18 TCGA-D5-6928-01 3 57314411 57314411 A G ASB14 Missense_Mutation p.L269P 0.09 deleterious(0) probably_damaging(0.992) TCGA-D5-6928-01 3 58139196 58139196 C T FLNB Silent p.C2185C 0.18 TCGA-D5-6928-01 3 58178596 58178596 C T DNASE1L3 Intron 0.13 TCGA-D5-6928-01 3 58510265 58510266 GA - ACOX2 Frame_Shift_Del p.P472Ifs*9 0.16 TCGA-D5-6928-01 3 61975365 61975365 T C PTPRG Missense_Mutation p.I86T 0.10 deleterious(0) benign(0.409) TCGA-D5-6928-01 3 62358359 62358359 T A FEZF2 Missense_Mutation p.K62I 0.09 deleterious(0.04) possibly_damaging(0.902) TCGA-D5-6928-01 3 65367655 65367655 C T MAGI1 Silent p.T866T 0.07 TCGA-D5-6928-01 3 66433685 66433685 G A LRIG1 Missense_Mutation p.R738W 0.27 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 3 68055637 68055637 A T FAM19A1 Intron 0.13 TCGA-D5-6928-01 3 68588002 68588002 G A FAM19A1 Missense_Mutation p.A119T 0.11 tolerated(0.54) benign(0.071) TCGA-D5-6928-01 3 71101768 71101768 G A FOXP1 Nonsense_Mutation p.Q146* 0.12 TCGA-D5-6928-01 3 71804178 71804178 G A GPR27 Silent p.L326L 0.17 TCGA-D5-6928-01 3 73433053 73433053 C T PDZRN3 Silent p.Q888Q 0.22 TCGA-D5-6928-01 3 74347147 74347147 G A CNTN3 Missense_Mutation p.P788S 0.12 tolerated(0.09) probably_damaging(1) TCGA-D5-6928-01 3 85851290 85851290 C A CADM2 Missense_Mutation p.T54N 0.11 deleterious(0) probably_damaging(0.966) TCGA-D5-6928-01 3 89480469 89480469 G A EPHA3 Missense_Mutation p.R769H 0.17 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 3 97499503 97499503 G T ARL6 Missense_Mutation p.R77I 0.08 deleterious(0) probably_damaging(0.982) TCGA-D5-6928-01 4 10022907 10022907 T A SLC2A9 Missense_Mutation p.R49S 0.20 tolerated(0.1) benign(0.001) TCGA-D5-6928-01 4 100235207 100235207 C T ADH1B Missense_Mutation p.G200D 0.20 deleterious(0) probably_damaging(0.987) TCGA-D5-6928-01 4 106159938 106159938 G T TET2 Intron 0.18 TCGA-D5-6928-01 4 109684041 109684041 T C ETNPPL Missense_Mutation p.Y5C 0.14 deleterious(0.01) possibly_damaging(0.75) TCGA-D5-6928-01 4 109780835 109780835 C A COL25A1 Missense_Mutation p.G433C 0.10 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 4 113298942 113298942 T A ALPK1 Missense_Mutation p.N3K 0.08 tolerated(0.05) benign(0.101) TCGA-D5-6928-01 4 113483629 113483629 G A C4orf21 Missense_Mutation p.A1532V 0.09 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 4 114262920 114262920 G A ANK2 Missense_Mutation p.V1324I 0.23 probably_damaging(0.999) TCGA-D5-6928-01 4 114277324 114277324 C T ANK2 Missense_Mutation p.A2517V 0.14 probably_damaging(0.999) TCGA-D5-6928-01 4 118005428 118005428 C T TRAM1L1 3'UTR 0.17 TCGA-D5-6928-01 4 119653960 119653960 G A SEC24D Silent p.Y868Y 0.10 TCGA-D5-6928-01 4 122735127 122735127 G A EXOSC9 Missense_Mutation p.G361S 0.14 tolerated_low_confidence(0.41) benign(0.013) TCGA-D5-6928-01 4 122782681 122782681 G T BBS7 Missense_Mutation p.L107I 0.16 deleterious(0.05) possibly_damaging(0.654) TCGA-D5-6928-01 4 122853987 122853987 G A TRPC3 Silent p.C142C 0.18 TCGA-D5-6928-01 4 123179985 123179985 C T KIAA1109 Missense_Mutation p.A2250V 0.11 benign(0.002) TCGA-D5-6928-01 4 124324128 124324128 A G SPRY1 3'UTR 0.20 TCGA-D5-6928-01 4 126238117 126238117 G A FAT4 Missense_Mutation p.R184H 0.15 probably_damaging(0.977) TCGA-D5-6928-01 4 126239198 126239198 T C FAT4 Silent p.L544L 0.12 TCGA-D5-6928-01 4 128626946 128626946 T - INTU Frame_Shift_Del p.L591Cfs*2 0.18 TCGA-D5-6928-01 4 128951881 128951881 T - C4orf29 3'UTR 0.14 TCGA-D5-6928-01 4 129770255 129770255 T C JADE1 Silent p.C139C 0.16 TCGA-D5-6928-01 4 129783197 129783197 G A JADE1 Silent p.L440L 0.18 TCGA-D5-6928-01 4 134071191 134071191 G A PCDH10 5'UTR 0.38 TCGA-D5-6928-01 4 1343335 1343335 G A UVSSA Missense_Mutation p.R41H 0.15 tolerated(1) benign(0.001) TCGA-D5-6928-01 4 140640448 140640448 C T MAML3 3'UTR 0.15 TCGA-D5-6928-01 4 146461145 146461145 G T SMAD1 Missense_Mutation p.G197V 0.19 tolerated(0.07) benign(0.001) TCGA-D5-6928-01 4 146807220 146807220 G A ZNF827 Missense_Mutation p.R453C 0.24 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 4 151177308 151177308 C - DCLK2 Frame_Shift_Del p.T756Pfs*161 0.30 TCGA-D5-6928-01 4 151504433 151504433 C T MAB21L2 Silent p.G84G 0.15 TCGA-D5-6928-01 4 151505429 151505429 C T MAB21L2 3'UTR 0.16 TCGA-D5-6928-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 4 153897187 153897187 C T FHDC1 Missense_Mutation p.A915V 0.17 tolerated(0.1) benign(0.011) TCGA-D5-6928-01 4 155219518 155219518 T C DCHS2 Missense_Mutation p.D1528G 0.13 deleterious(0.01) probably_damaging(0.924) TCGA-D5-6928-01 4 155411301 155411301 C T DCHS2 Missense_Mutation p.V403M 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 4 156841180 156841180 A G TDO2 3'UTR 0.14 TCGA-D5-6928-01 4 15689537 15689537 T A FAM200B Missense_Mutation p.L313I 0.13 tolerated(1) probably_damaging(0.99) TCGA-D5-6928-01 4 16504105 16504105 A C LDB2 3'UTR 0.17 TCGA-D5-6928-01 4 165890732 165890732 C T TRIM61 Silent p.R141R 0.09 TCGA-D5-6928-01 4 166131315 166131315 G A KLHL2 Silent p.R7R 0.10 TCGA-D5-6928-01 4 169341494 169341494 C T DDX60L Missense_Mutation p.R811H 0.22 deleterious(0.02) possibly_damaging(0.636) TCGA-D5-6928-01 4 170613460 170613460 A - CLCN3 Frame_Shift_Del p.R311Gfs*14 0.19 TCGA-D5-6928-01 4 177098789 177098789 C T WDR17 Missense_Mutation p.T1278M 0.14 deleterious(0) possibly_damaging(0.893) TCGA-D5-6928-01 4 183063506 183063506 G A AC108142.1 RNA 0.16 TCGA-D5-6928-01 4 183675851 183675851 T C TENM3 Missense_Mutation p.I1444T 0.23 tolerated(0.08) benign(0.002) TCGA-D5-6928-01 4 185689315 185689315 G A ACSL1 Intron 0.27 TCGA-D5-6928-01 4 186381223 186381223 C A CCDC110 Missense_Mutation p.R173I 0.16 deleterious(0.01) possibly_damaging(0.462) TCGA-D5-6928-01 4 186435444 186435444 G T PDLIM3 Missense_Mutation p.F126L 0.16 tolerated(0.05) possibly_damaging(0.54) TCGA-D5-6928-01 4 186536017 186536017 C T SORBS2 Missense_Mutation p.A1051T 0.15 deleterious(0) probably_damaging(0.986) TCGA-D5-6928-01 4 187208936 187208936 A T F11 Missense_Mutation p.I559F 0.11 deleterious(0) benign(0.409) TCGA-D5-6928-01 4 187454831 187454831 C T MTNR1A 3'UTR 0.24 TCGA-D5-6928-01 4 189020171 189020171 T - TRIML2 Intron 0.20 TCGA-D5-6928-01 4 189061074 189061074 G A TRIML1 Missense_Mutation p.G121D 0.14 tolerated(0.13) benign(0.424) TCGA-D5-6928-01 4 21950334 21950334 G A KCNIP4 5'UTR 0.17 TCGA-D5-6928-01 4 2355760 2355760 T A ZFYVE28 Missense_Mutation p.D27V 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 4 23886311 23886311 A G PPARGC1A Intron 0.17 TCGA-D5-6928-01 4 2930230 2930232 AAG - ADD1 In_Frame_Del p.K765del 0.17 TCGA-D5-6928-01 4 3415891 3415891 C T RGS12 Missense_Mutation p.R705C 0.15 deleterious(0.01) probably_damaging(0.939) TCGA-D5-6928-01 4 36296508 36296508 T C DTHD1 Missense_Mutation p.I372T 0.11 deleterious(0.01) benign(0.011) TCGA-D5-6928-01 4 36309889 36309889 T - DTHD1 Frame_Shift_Del p.L499* 0.15 TCGA-D5-6928-01 4 38138859 38138859 C T TBC1D1 Missense_Mutation p.S1137L 0.12 tolerated(0.32) benign(0.004) TCGA-D5-6928-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.27 TCGA-D5-6928-01 4 39447965 39447965 C T KLB Missense_Mutation p.A540V 0.31 tolerated(0.76) benign(0.02) TCGA-D5-6928-01 4 39905698 39905698 T C PDS5A Silent p.K449K 0.15 TCGA-D5-6928-01 4 40440442 40440442 C T RBM47 Missense_Mutation p.G157R 0.19 deleterious(0.01) probably_damaging(1) TCGA-D5-6928-01 4 41016252 41016252 G A APBB2 Silent p.S61S 0.16 TCGA-D5-6928-01 4 41362914 41362914 C A LIMCH1 Silent p.P19P 0.14 TCGA-D5-6928-01 4 4228255 4228255 G A OTOP1 Missense_Mutation p.R113C 0.33 tolerated(0.18) probably_damaging(0.912) TCGA-D5-6928-01 4 48512935 48512935 G A FRYL Missense_Mutation p.R2738C 0.19 deleterious(0.01) possibly_damaging(0.816) TCGA-D5-6928-01 4 48894904 48894904 C T OCIAD2 Missense_Mutation p.A90T 0.16 deleterious(0.04) benign(0.433) TCGA-D5-6928-01 4 54967859 54967859 C A GSX2 Silent p.R229R 0.11 TCGA-D5-6928-01 4 55129918 55129918 G A PDGFRA Missense_Mutation p.R151H 0.14 deleterious(0.04) benign(0.028) TCGA-D5-6928-01 4 62453020 62453020 G A LPHN3 Missense_Mutation p.R44H 0.13 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 4 66242745 66242745 C A EPHA5 Silent p.L609L 0.15 TCGA-D5-6928-01 4 69816803 69816803 C T UGT2A3 Missense_Mutation p.D226N 0.16 tolerated(0.96) probably_damaging(0.972) TCGA-D5-6928-01 4 69817137 69817137 A - UGT2A3 Frame_Shift_Del p.F114Lfs*4 0.14 TCGA-D5-6928-01 4 74719796 74719796 C T PF4V1 Missense_Mutation p.A91V 0.17 deleterious(0.05) possibly_damaging(0.615) TCGA-D5-6928-01 4 74847639 74847639 C T PF4 Missense_Mutation p.R11H 0.12 tolerated_low_confidence(0.15) benign(0) TCGA-D5-6928-01 4 76570595 76570595 C T G3BP2 3'UTR 0.20 TCGA-D5-6928-01 4 78086980 78086980 G A CCNG2 Missense_Mutation p.C313Y 0.14 deleterious_low_confidence(0) benign(0.401) TCGA-D5-6928-01 4 80929758 80929758 C T ANTXR2 Missense_Mutation p.A320T 0.10 tolerated(0.41) possibly_damaging(0.667) TCGA-D5-6928-01 4 8233753 8233753 C T SH3TC1 Missense_Mutation p.P1001S 0.12 deleterious(0.03) possibly_damaging(0.869) TCGA-D5-6928-01 4 83778841 83778841 C - SEC31A Splice_Site p.X568_splice 0.11 TCGA-D5-6928-01 4 8607830 8607830 G A CPZ Missense_Mutation p.R275H 0.18 deleterious(0) probably_damaging(0.989) TCGA-D5-6928-01 4 860943 860943 G A GAK Silent p.G891G 0.16 TCGA-D5-6928-01 4 87685845 87685845 A - PTPN13 Frame_Shift_Del p.N1374Mfs*7 0.13 TCGA-D5-6928-01 4 88536681 88536681 G A DSPP Missense_Mutation p.S956N 0.18 unknown(0) TCGA-D5-6928-01 4 90035034 90035034 G A TIGD2 Silent p.L303L 0.10 TCGA-D5-6928-01 4 90169095 90169095 A T GPRIN3 Missense_Mutation p.L723I 0.14 deleterious(0.04) benign(0.033) TCGA-D5-6928-01 4 96761757 96761757 T C PDHA2 Silent p.H152H 0.21 TCGA-D5-6928-01 4 96762551 96762551 G A PDHA2 3'UTR 0.27 TCGA-D5-6928-01 4 9785349 9785349 G C DRD5 3'UTR 0.19 TCGA-D5-6928-01 4 99579377 99579377 T C TSPAN5 Translation_Start_Site p.M1? 0.16 deleterious(0) benign(0.014) TCGA-D5-6928-01 5 102282575 102282575 C A PAM Missense_Mutation p.H187Q 0.15 tolerated(0.11) probably_damaging(0.998) TCGA-D5-6928-01 5 10263288 10263288 G A CCT5 Missense_Mutation p.A454T 0.18 deleterious(0.02) benign(0.213) TCGA-D5-6928-01 5 112227712 112227712 G T ZRSR1 Nonsense_Mutation p.E126* 0.15 TCGA-D5-6928-01 5 112227916 112227916 C T ZRSR1 Missense_Mutation p.R194C 0.15 deleterious(0.05) possibly_damaging(0.891) TCGA-D5-6928-01 5 112676264 112676264 C T MCC Silent p.P193P 0.11 TCGA-D5-6928-01 5 115298666 115298666 G A AQPEP Missense_Mutation p.D118N 0.21 tolerated(0.19) benign(0.056) TCGA-D5-6928-01 5 115783023 115783023 G - SEMA6A Frame_Shift_Del p.M794Wfs*5 0.08 TCGA-D5-6928-01 5 118582767 118582767 T C DMXL1 Silent p.I2979I 0.12 TCGA-D5-6928-01 5 123984610 123984610 A G ZNF608 Silent p.D489D 0.11 TCGA-D5-6928-01 5 126791251 126791251 G A MEGF10 Missense_Mutation p.A1062T 0.13 tolerated(0.55) benign(0.016) TCGA-D5-6928-01 5 131607548 131607548 G A PDLIM4 Silent p.P245P 0.15 TCGA-D5-6928-01 5 131730020 131730020 C T SLC22A5 3'UTR 0.18 TCGA-D5-6928-01 5 131931411 131931411 C T RAD50 Nonsense_Mutation p.R706* 0.10 TCGA-D5-6928-01 5 133311611 133311611 C T VDAC1 Missense_Mutation p.R218H 0.14 tolerated(0.15) benign(0.001) TCGA-D5-6928-01 5 13700867 13700867 G A DNAH5 Silent p.V4535V 0.16 TCGA-D5-6928-01 5 138715459 138715459 G A SLC23A1 Missense_Mutation p.P282L 0.16 deleterious(0) possibly_damaging(0.858) TCGA-D5-6928-01 5 139060476 139060476 C T CXXC5 Missense_Mutation p.A123V 0.14 deleterious(0.01) benign(0.26) TCGA-D5-6928-01 5 139216758 139216758 C A PSD2 Missense_Mutation p.R534S 0.19 deleterious(0.04) probably_damaging(0.983) TCGA-D5-6928-01 5 140076881 140076881 C T HARS2 Missense_Mutation p.R363C 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 5 140188477 140188477 C T PCDHA4 Missense_Mutation p.R569W 0.15 tolerated_low_confidence(0.26) benign(0.001) TCGA-D5-6928-01 5 140202636 140202636 G A PCDHA5 Missense_Mutation p.A426T 0.10 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-D5-6928-01 5 140214745 140214745 G A PCDHA7 Silent p.T259T 0.09 TCGA-D5-6928-01 5 140263221 140263221 G A PCDHA13 Silent p.A456A 0.17 TCGA-D5-6928-01 5 140476822 140476823 - T PCDHB2 3'UTR 0.11 TCGA-D5-6928-01 5 140516633 140516633 G A PCDHB5 Silent p.A539A 0.22 TCGA-D5-6928-01 5 140531785 140531785 G A PCDHB6 Silent p.P649P 0.26 TCGA-D5-6928-01 5 140554466 140554466 C A PCDHB7 Missense_Mutation p.L684I 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.619) TCGA-D5-6928-01 5 140572480 140572480 G A PCDHB10 Missense_Mutation p.A119T 0.12 tolerated_low_confidence(0.12) benign(0.023) TCGA-D5-6928-01 5 140581021 140581021 G A PCDHB11 Silent p.S558S 0.10 TCGA-D5-6928-01 5 140595369 140595369 G A PCDHB13 Silent p.S558S 0.17 TCGA-D5-6928-01 5 140615722 140615722 C T PCDHB18 RNA 0.13 TCGA-D5-6928-01 5 140744503 140744503 C T PCDHGA5 Silent p.R202R 0.14 TCGA-D5-6928-01 5 140755534 140755534 G T PCDHGA6 Silent p.T628T 0.25 TCGA-D5-6928-01 5 140811618 140811618 C A PCDHGA12 Missense_Mutation p.P431H 0.14 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D5-6928-01 5 141026172 141026172 G A FCHSD1 Missense_Mutation p.R348W 0.14 deleterious(0.03) benign(0.014) TCGA-D5-6928-01 5 141336358 141336358 G A PCDH12 Silent p.H353H 0.15 TCGA-D5-6928-01 5 141693860 141693860 C T SPRY4 Missense_Mutation p.G295S 0.13 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 5 146778686 146778686 G A DPYSL3 Missense_Mutation p.P528S 0.12 deleterious(0.02) benign(0.007) TCGA-D5-6928-01 5 147505095 147505095 C T SPINK5 Silent p.C916C 0.20 TCGA-D5-6928-01 5 148624520 148624520 G A ABLIM3 Silent p.S476S 0.13 TCGA-D5-6928-01 5 148699178 148699178 G A AFAP1L1 Missense_Mutation p.G505R 0.29 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 5 149212971 149212972 - GAG PPARGC1B In_Frame_Ins p.E450dup 0.19 TCGA-D5-6928-01 5 149278947 149278947 C T PDE6A Silent p.T418T 0.18 TCGA-D5-6928-01 5 149515369 149515369 G - PDGFRB Frame_Shift_Del p.P38Rfs*15 0.12 TCGA-D5-6928-01 5 149677547 149677547 G A ARSI Missense_Mutation p.R314C 0.18 tolerated(0.08) benign(0.329) TCGA-D5-6928-01 5 149772311 149772311 C T TCOF1 Silent p.T1186T 0.10 TCGA-D5-6928-01 5 150136031 150136031 G A DCTN4 Missense_Mutation p.P52S 0.13 tolerated(0.18) possibly_damaging(0.868) TCGA-D5-6928-01 5 154202035 154202035 A G FAXDC2 Silent p.H225H 0.11 TCGA-D5-6928-01 5 155771535 155771535 A G SGCD Missense_Mutation p.M14V 0.17 tolerated(0.73) benign(0.001) TCGA-D5-6928-01 5 156819961 156819961 C T CYFIP2 Missense_Mutation p.R1213C 0.17 deleterious(0) probably_damaging(0.931) TCGA-D5-6928-01 5 157241240 157241240 C T CLINT1 Missense_Mutation p.R102K 0.17 deleterious(0) probably_damaging(0.97) TCGA-D5-6928-01 5 158524134 158524134 C - EBF1 Frame_Shift_Del p.V47Wfs*74 0.09 TCGA-D5-6928-01 5 159344667 159344667 C T ADRA1B Missense_Mutation p.T252I 0.16 deleterious(0.04) probably_damaging(1) TCGA-D5-6928-01 5 159912361 159912361 G A MIR146A RNA 0.18 TCGA-D5-6928-01 5 161113340 161113340 G A GABRA6 Missense_Mutation p.R48Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 5 161116677 161116677 A - GABRA6 Frame_Shift_Del p.G191Dfs*6 0.12 TCGA-D5-6928-01 5 167891939 167891939 G A WWC1 Missense_Mutation p.R1047H 0.13 tolerated(0.08) probably_damaging(0.979) TCGA-D5-6928-01 5 168123334 168123334 G A SLIT3 Silent p.I1015I 0.17 TCGA-D5-6928-01 5 169135271 169135271 G T DOCK2 Missense_Mutation p.K494N 0.20 deleterious(0) possibly_damaging(0.616) TCGA-D5-6928-01 5 169533518 169533518 G A FOXI1 Missense_Mutation p.R186H 0.18 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 5 171295788 171295788 G A FBXW11 Missense_Mutation p.R494C 0.14 deleterious(0.02) possibly_damaging(0.769) TCGA-D5-6928-01 5 17275540 17275540 A T BASP1 Missense_Mutation p.E72V 0.23 tolerated(0.13) unknown(0) TCGA-D5-6928-01 5 176018419 176018419 T C CDHR2 Missense_Mutation p.L1223P 0.09 deleterious(0) probably_damaging(0.967) TCGA-D5-6928-01 5 176520759 176520759 C T FGFR4 Missense_Mutation p.A501V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6928-01 5 177034356 177034356 C T B4GALT7 Missense_Mutation p.T156M 0.15 tolerated(0.22) probably_damaging(0.984) TCGA-D5-6928-01 5 177546588 177546588 G A N4BP3 Missense_Mutation p.A2T 0.12 tolerated_low_confidence(0.1) benign(0.215) TCGA-D5-6928-01 5 178202288 178202288 G A AACSP1 RNA 0.26 TCGA-D5-6928-01 5 179079354 179079354 C T AC136604.1 3'Flank 0.13 TCGA-D5-6928-01 5 179193138 179193138 C - MAML1 Frame_Shift_Del p.A378Qfs*63 0.14 TCGA-D5-6928-01 5 179290809 179290809 C - TBC1D9B Frame_Shift_Del p.G1131Afs*78 0.15 TCGA-D5-6928-01 5 180661666 180661666 C A TRIM41 Missense_Mutation p.A595E 0.14 deleterious(0) probably_damaging(0.924) TCGA-D5-6928-01 5 21854886 21854886 G T CDH12 Silent p.L180L 0.16 TCGA-D5-6928-01 5 23526599 23526599 T C PRDM9 Missense_Mutation p.W468R 0.13 tolerated(1) benign(0.002) TCGA-D5-6928-01 5 251555 251555 G A SDHA Missense_Mutation p.R589Q 0.17 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D5-6928-01 5 32255854 32255854 A G MTMR12 Missense_Mutation p.V245A 0.15 deleterious(0) benign(0.234) TCGA-D5-6928-01 5 33881400 33881401 - A ADAMTS12 Frame_Shift_Ins p.N105* 0.14 TCGA-D5-6928-01 5 34823760 34823760 C T RAI14 Nonsense_Mutation p.Q608* 0.14 TCGA-D5-6928-01 5 34914827 34914827 C T RAD1 Silent p.K57K 0.15 TCGA-D5-6928-01 5 35070225 35070225 C G PRLR Splice_Site p.X229_splice 0.12 TCGA-D5-6928-01 5 37064899 37064899 A - NIPBL Frame_Shift_Del p.I2776Lfs*3 0.14 TCGA-D5-6928-01 5 37120324 37120324 G A C5orf42 Missense_Mutation p.P3048S 0.17 tolerated(0.41) benign(0.026) TCGA-D5-6928-01 5 37180262 37180262 T - C5orf42 Frame_Shift_Del p.N1865Ifs*4 0.09 TCGA-D5-6928-01 5 38427237 38427237 G A EGFLAM Missense_Mutation p.G646E 0.13 tolerated(1) benign(0.012) TCGA-D5-6928-01 5 40852809 40852809 C T CARD6 Missense_Mutation p.R459C 0.10 deleterious(0) probably_damaging(0.993) TCGA-D5-6928-01 5 41033160 41033160 G A MROH2B Silent p.L782L 0.15 TCGA-D5-6928-01 5 41160428 41160428 T G C6 Silent p.A500A 0.16 TCGA-D5-6928-01 5 41731839 41731839 C T OXCT1 Missense_Mutation p.A519T 0.16 tolerated_low_confidence(0.13) benign(0) TCGA-D5-6928-01 5 54960548 54960548 G T SLC38A9 Missense_Mutation p.L224I 0.24 tolerated(0.07) probably_damaging(0.957) TCGA-D5-6928-01 5 57791825 57791825 C A GAPT 3'UTR 0.17 TCGA-D5-6928-01 5 61876755 61876755 A - LRRC70 Frame_Shift_Del p.N499Tfs*17 0.19 TCGA-D5-6928-01 5 68470813 68470813 T G CCNB1 Missense_Mutation p.V272G 0.15 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 5 68661388 68661388 G A TAF9 Silent p.S59S 0.12 TCGA-D5-6928-01 5 70818215 70818215 G T BDP1 Missense_Mutation p.E1697D 0.15 tolerated(0.09) benign(0.013) TCGA-D5-6928-01 5 70892152 70892152 T G MCCC2 Missense_Mutation p.L81R 0.09 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-D5-6928-01 5 72383575 72383575 C T FCHO2 Missense_Mutation p.A802V 0.11 tolerated(0.14) probably_damaging(0.949) TCGA-D5-6928-01 5 74650967 74650967 A T HMGCR Missense_Mutation p.E550D 0.23 tolerated(0.54) benign(0.006) TCGA-D5-6928-01 5 74998520 74998520 G A POC5 Silent p.A141A 0.17 TCGA-D5-6928-01 5 76264619 76264619 G A CRHBP Missense_Mutation p.R293H 0.15 deleterious(0.05) possibly_damaging(0.767) TCGA-D5-6928-01 5 76264808 76264808 C T CRHBP 3'UTR 0.21 TCGA-D5-6928-01 5 78379497 78379497 C A BHMT2 Silent p.A276A 0.20 TCGA-D5-6928-01 5 78423713 78423713 C - BHMT Frame_Shift_Del p.P316Qfs*42 0.11 TCGA-D5-6928-01 5 78602260 78602260 T A JMY Nonsense_Mutation p.Y648* 0.12 TCGA-D5-6928-01 5 79034605 79034605 G A CMYA5 Silent p.A3339A 0.08 TCGA-D5-6928-01 5 79284409 79284409 G T MTX3 Missense_Mutation p.A66D 0.18 deleterious(0) probably_damaging(0.991) TCGA-D5-6928-01 5 79733108 79733108 G A ZFYVE16 Missense_Mutation p.G202R 0.20 tolerated(0.29) benign(0.001) TCGA-D5-6928-01 5 88018692 88018692 G C MEF2C Missense_Mutation p.S394C 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6928-01 5 89923034 89923034 G T GPR98 Nonsense_Mutation p.E227* 0.10 TCGA-D5-6928-01 5 904309 904309 G T TRIP13 Missense_Mutation p.Q194H 0.28 deleterious(0.04) possibly_damaging(0.573) TCGA-D5-6928-01 5 92921192 92921192 G A NR2F1 Missense_Mutation p.A155T 0.17 deleterious(0) benign(0.115) TCGA-D5-6928-01 5 94619751 94619751 C - MCTP1 Frame_Shift_Del p.D177Tfs*66 0.12 TCGA-D5-6928-01 5 95119656 95119656 A - RHOBTB3 Frame_Shift_Del p.K539Rfs*53 0.21 TCGA-D5-6928-01 5 95234230 95234230 G A ELL2 Silent p.D413D 0.20 TCGA-D5-6928-01 5 96460234 96460234 G T LIX1 Missense_Mutation p.A61D 0.19 deleterious(0.01) benign(0.008) TCGA-D5-6928-01 5 96498784 96498784 G A RIOK2 Missense_Mutation p.A547V 0.26 tolerated(0.07) benign(0.008) TCGA-D5-6928-01 5 96507092 96507092 T C RIOK2 Missense_Mutation p.I199M 0.21 deleterious(0.01) possibly_damaging(0.533) TCGA-D5-6928-01 6 107070840 107070840 A G RTN4IP1 Silent p.G93G 0.22 TCGA-D5-6928-01 6 107811779 107811779 G A SOBP 5'UTR 0.15 TCGA-D5-6928-01 6 108985677 108985677 C T FOXO3 Silent p.S547S 0.15 TCGA-D5-6928-01 6 109850222 109850222 T - AK9 Frame_Shift_Del p.R1209Gfs*39 0.14 TCGA-D5-6928-01 6 11005658 11005658 G A ELOVL2 Missense_Mutation p.L68F 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-D5-6928-01 6 110081505 110081505 C T FIG4 Missense_Mutation p.A397V 0.13 deleterious(0.04) possibly_damaging(0.733) TCGA-D5-6928-01 6 121770239 121770239 T - GJA1 3'UTR 0.10 TCGA-D5-6928-01 6 122753331 122753331 C A HSF2 Missense_Mutation p.P526H 0.21 tolerated(0.06) benign(0.303) TCGA-D5-6928-01 6 126242164 126242164 C T NCOA7 Missense_Mutation p.P774S 0.18 deleterious(0) probably_damaging(0.985) TCGA-D5-6928-01 6 127836183 127836183 C T SOGA3 Missense_Mutation p.D371N 0.31 deleterious(0.01) benign(0.233) TCGA-D5-6928-01 6 127837488 127837488 G A SOGA3 Missense_Mutation p.P91L 0.14 tolerated_low_confidence(0.12) benign(0) TCGA-D5-6928-01 6 129465151 129465151 C T LAMA2 Missense_Mutation p.R249C 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 6 129807758 129807758 G A LAMA2 Missense_Mutation p.R2630Q 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 6 131199278 131199278 C T EPB41L2 Missense_Mutation p.R670Q 0.18 deleterious(0) probably_damaging(0.979) TCGA-D5-6928-01 6 132006591 132006591 C T ENPP3 Missense_Mutation p.A403V 0.15 tolerated(0.07) probably_damaging(0.911) TCGA-D5-6928-01 6 133004445 133004445 C T VNN1 Missense_Mutation p.R459H 0.22 tolerated(0.19) probably_damaging(0.912) TCGA-D5-6928-01 6 133065627 133065627 G A VNN2 Silent p.L459L 0.15 TCGA-D5-6928-01 6 136599334 136599334 G A BCLAF1 Missense_Mutation p.P229S 0.09 tolerated(0.06) possibly_damaging(0.803) TCGA-D5-6928-01 6 136677900 136677900 G A MAP7 Missense_Mutation p.P671S 0.12 tolerated(0.33) unknown(0) TCGA-D5-6928-01 6 146240543 146240543 G A SHPRH Missense_Mutation p.R1365C 0.20 deleterious(0) probably_damaging(0.981) TCGA-D5-6928-01 6 147588258 147588258 G T STXBP5 Missense_Mutation p.W223C 0.14 deleterious(0) probably_damaging(0.992) TCGA-D5-6928-01 6 150123604 150123604 G A PCMT1 Intron 0.11 TCGA-D5-6928-01 6 150326216 150326216 C T RAET1K RNA 0.10 TCGA-D5-6928-01 6 152534795 152534795 C A SYNE1 Missense_Mutation p.E7482D 0.14 benign(0.445) TCGA-D5-6928-01 6 152688429 152688429 G A SYNE1 Missense_Mutation p.A3299V 0.13 benign(0.028) TCGA-D5-6928-01 6 152763368 152763368 G A SYNE1 Missense_Mutation p.R1284W 0.11 possibly_damaging(0.677) TCGA-D5-6928-01 6 152841662 152841662 G A SYNE1 Missense_Mutation p.R81C 0.18 possibly_damaging(0.658) TCGA-D5-6928-01 6 15501481 15501481 C T JARID2 Silent p.G763G 0.14 TCGA-D5-6928-01 6 155129817 155129817 A G SCAF8 Intron 0.12 TCGA-D5-6928-01 6 157431612 157431612 A G ARID1B Missense_Mutation p.Q763R 0.11 probably_damaging(0.992) TCGA-D5-6928-01 6 158516862 158516862 G A SYNJ2 Silent p.V1319V 0.11 TCGA-D5-6928-01 6 159654837 159654837 C T FNDC1 Missense_Mutation p.A1098V 0.13 deleterious_low_confidence(0.05) unknown(0) TCGA-D5-6928-01 6 160482866 160482866 C T IGF2R Missense_Mutation p.A1163V 0.13 tolerated(0.08) benign(0.082) TCGA-D5-6928-01 6 1612434 1612434 C A FOXC1 3'UTR 0.17 TCGA-D5-6928-01 6 16145484 16145484 T A MYLIP Missense_Mutation p.I395N 0.14 deleterious(0) probably_damaging(0.918) TCGA-D5-6928-01 6 16327512 16327512 G T ATXN1 Missense_Mutation p.L344M 0.12 tolerated(0.09) benign(0.09) TCGA-D5-6928-01 6 166844078 166844078 C T RPS6KA2 Missense_Mutation p.V490M 0.13 deleterious(0.02) possibly_damaging(0.715) TCGA-D5-6928-01 6 167453497 167453497 G A FGFR1OP 3'UTR 0.24 TCGA-D5-6928-01 6 167587339 167587339 C A TCP10L2 Silent p.A81A 0.07 TCGA-D5-6928-01 6 168443280 168443280 C T KIF25 Missense_Mutation p.A290V 0.17 deleterious(0.04) benign(0.005) TCGA-D5-6928-01 6 169639719 169639719 G A THBS2 Silent p.G368G 0.13 TCGA-D5-6928-01 6 22570146 22570146 C T HDGFL1 Silent p.G114G 0.12 TCGA-D5-6928-01 6 24278301 24278301 A G DCDC2 Missense_Mutation p.S300P 0.20 tolerated(0.11) benign(0.009) TCGA-D5-6928-01 6 26124575 26124575 A G HIST1H2AC Missense_Mutation p.N39D 0.09 deleterious_low_confidence(0) benign(0.325) TCGA-D5-6928-01 6 26246887 26246887 G A HIST1H4G 3'UTR 0.15 TCGA-D5-6928-01 6 26468276 26468276 C T BTN2A1 Silent p.S361S 0.17 TCGA-D5-6928-01 6 26546014 26546014 C T HMGN4 3'UTR 0.16 TCGA-D5-6928-01 6 27101205 27101205 A - HIST1H2AG Frame_Shift_Del p.K120Rfs*16 0.13 TCGA-D5-6928-01 6 27834655 27834655 G A HIST1H1B Missense_Mutation p.A218V 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-D5-6928-01 6 28060580 28060580 G A ZNF165 3'Flank 0.20 TCGA-D5-6928-01 6 30038791 30038791 C T RNF39 3'UTR 0.24 TCGA-D5-6928-01 6 30309622 30309622 C T TRIM39 Silent p.C381C 0.20 TCGA-D5-6928-01 6 30883607 30883607 G A VARS2 Missense_Mutation p.A187T 0.19 deleterious(0) probably_damaging(0.923) TCGA-D5-6928-01 6 30883806 30883806 T C VARS2 Silent p.H215H 0.12 TCGA-D5-6928-01 6 31106465 31106465 C T PSORS1C1 Missense_Mutation p.L26F 0.16 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-D5-6928-01 6 31593808 31593808 G A PRRC2A Missense_Mutation p.R284H 0.17 unknown(0) TCGA-D5-6928-01 6 31675532 31675532 A G LY6G6F Missense_Mutation p.N117S 0.15 deleterious(0.01) possibly_damaging(0.874) TCGA-D5-6928-01 6 31686782 31686782 G A LY6G6C 3'UTR 0.26 TCGA-D5-6928-01 6 31778270 31778270 C T HSPA1L Missense_Mutation p.D494N 0.18 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-D5-6928-01 6 31847812 31847812 C T EHMT2 3'UTR 0.21 TCGA-D5-6928-01 6 31964093 31964094 AG - C4A Frame_Shift_Del p.R1167Sfs*60 0.13 TCGA-D5-6928-01 6 32017808 32017808 G A TNXB 5'Flank 0.21 TCGA-D5-6928-01 6 32035527 32035527 C - TNXB Frame_Shift_Del p.G2152Afs*46 0.19 TCGA-D5-6928-01 6 32190782 32190782 T C NOTCH4 Missense_Mutation p.Q52R 0.08 tolerated(0.36) benign(0.003) TCGA-D5-6928-01 6 32713069 32713069 T C HLA-DQA2 Silent p.P72P 0.14 TCGA-D5-6928-01 6 32917127 32917127 G A HLA-DMA Silent p.G234G 0.19 TCGA-D5-6928-01 6 33264446 33264446 G A RGL2 Silent p.F116F 0.19 TCGA-D5-6928-01 6 33383436 33383437 - C PHF1 Frame_Shift_Ins p.D471Rfs*17 0.15 TCGA-D5-6928-01 6 33410763 33410763 C - SYNGAP1 Frame_Shift_Del p.L813Wfs*23 0.12 TCGA-D5-6928-01 6 33653922 33653922 C T ITPR3 Silent p.G1920G 0.17 TCGA-D5-6928-01 6 34498248 34498248 A G PACSIN1 Silent p.P307P 0.09 TCGA-D5-6928-01 6 36259308 36259308 G A PNPLA1 Silent p.T139T 0.12 TCGA-D5-6928-01 6 36353415 36353415 G T ETV7 Missense_Mutation p.P13H 0.17 deleterious(0.02) possibly_damaging(0.873) TCGA-D5-6928-01 6 36842542 36842542 C T PPIL1 Missense_Mutation p.A3T 0.16 tolerated_low_confidence(0.08) benign(0.001) TCGA-D5-6928-01 6 36982710 36982710 C A FGD2 Missense_Mutation p.L309I 0.11 tolerated(0.33) probably_damaging(0.997) TCGA-D5-6928-01 6 37186670 37186670 G A TMEM217 Missense_Mutation p.T46I 0.14 tolerated(0.19) benign(0.072) TCGA-D5-6928-01 6 39507857 39507857 G A KIF6 Nonsense_Mutation p.R523* 0.18 TCGA-D5-6928-01 6 40399551 40399551 G T LRFN2 Silent p.T434T 0.35 TCGA-D5-6928-01 6 41712188 41712188 G A PGC Missense_Mutation p.T92I 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 6 42019235 42019236 AG - TAF8 Frame_Shift_Del p.E63Dfs*18 0.21 TCGA-D5-6928-01 6 42181908 42181908 G A MRPS10 Nonsense_Mutation p.Q46* 0.16 TCGA-D5-6928-01 6 42196189 42196189 A T TRERF1 Missense_Mutation p.V1166D 0.13 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D5-6928-01 6 42237200 42237200 G A TRERF1 Silent p.G43G 0.15 TCGA-D5-6928-01 6 42832627 42832627 A - GLTSCR1L Frame_Shift_Del p.T897Qfs*8 0.17 TCGA-D5-6928-01 6 42975154 42975154 C T PPP2R5D Silent p.L212L 0.14 TCGA-D5-6928-01 6 43022034 43022034 G T MRPL2 Missense_Mutation p.P299H 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 6 43154161 43154161 C T CUL9 Missense_Mutation p.R407W 0.22 deleterious(0) possibly_damaging(0.861) TCGA-D5-6928-01 6 44147869 44147869 C T CAPN11 Missense_Mutation p.R537W 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 6 46129326 46129326 A G ENPP5 Missense_Mutation p.S391P 0.09 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 6 46620303 46620303 G A CYP39A1 Missense_Mutation p.P6L 0.19 tolerated(0.18) possibly_damaging(0.663) TCGA-D5-6928-01 6 46977895 46977895 G A GPR110 Missense_Mutation p.R426W 0.16 deleterious(0.02) possibly_damaging(0.724) TCGA-D5-6928-01 6 4716074 4716074 A G CDYL Missense_Mutation p.Y21C 0.12 deleterious_low_confidence(0) benign(0.039) TCGA-D5-6928-01 6 47251816 47251816 C A TNFRSF21 Silent p.V367V 0.16 TCGA-D5-6928-01 6 47759606 47759606 C T OPN5 Missense_Mutation p.R107C 0.18 tolerated(0.19) benign(0.175) TCGA-D5-6928-01 6 4891979 4891979 A G CDYL Silent p.K19K 0.13 TCGA-D5-6928-01 6 51613280 51613280 C T PKHD1 Missense_Mutation p.G3045D 0.24 tolerated(0.49) benign(0.084) TCGA-D5-6928-01 6 52935854 52935854 G T FBXO9 Missense_Mutation p.Q11H 0.17 deleterious_low_confidence(0.01) benign(0.03) TCGA-D5-6928-01 6 56329528 56329528 G A DST Intron 0.09 TCGA-D5-6928-01 6 56347527 56347527 G A DST Missense_Mutation p.A4496V 0.13 possibly_damaging(0.892) TCGA-D5-6928-01 6 66205045 66205045 T A EYS Missense_Mutation p.I87F 0.10 tolerated_low_confidence(0.17) benign(0.342) TCGA-D5-6928-01 6 7229879 7229879 G A RREB1 Missense_Mutation p.R516Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-D5-6928-01 6 7230385 7230385 G A RREB1 Missense_Mutation p.A685T 0.23 tolerated(0.79) possibly_damaging(0.758) TCGA-D5-6928-01 6 72806829 72806829 G A RIMS1 Silent p.A141A 0.16 TCGA-D5-6928-01 6 73933479 73933479 C T KHDC1L Missense_Mutation p.G127R 0.28 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D5-6928-01 6 74490996 74490996 G T CD109 Missense_Mutation p.W639C 0.18 tolerated(0.07) possibly_damaging(0.571) TCGA-D5-6928-01 6 78172232 78172232 C T HTR1B Missense_Mutation p.A297T 0.13 tolerated(0.3) possibly_damaging(0.657) TCGA-D5-6928-01 6 78172502 78172502 G A HTR1B Missense_Mutation p.L207F 0.11 tolerated(0.63) benign(0.012) TCGA-D5-6928-01 6 79707219 79707219 C T PHIP Missense_Mutation p.A705T 0.15 tolerated(0.11) probably_damaging(0.972) TCGA-D5-6928-01 6 80626333 80626333 C A ELOVL4 Nonsense_Mutation p.G313* 0.12 TCGA-D5-6928-01 6 83861736 83861736 T C DOPEY1 Silent p.S2013S 0.09 TCGA-D5-6928-01 6 84234948 84234949 - T PRSS35 3'UTR 0.11 TCGA-D5-6928-01 6 84569562 84569562 G - CYB5R4 Frame_Shift_Del p.R23Vfs*6 0.19 TCGA-D5-6928-01 6 87725621 87725621 C T HTR1E Missense_Mutation p.A190V 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 6 88234334 88234334 G A RARS2 Silent p.G305G 0.20 TCGA-D5-6928-01 6 88854385 88854385 G A CNR1 Silent p.S203S 0.25 TCGA-D5-6928-01 6 89977479 89977479 T - GABRR2 Frame_Shift_Del p.T219Qfs*11 0.11 TCGA-D5-6928-01 6 90573229 90573229 A - CASP8AP2 RNA 0.12 TCGA-D5-6928-01 6 96044687 96044687 A G MANEA Missense_Mutation p.T207A 0.19 tolerated(0.85) benign(0.004) TCGA-D5-6928-01 6 96662321 96662321 C A FUT9 3'UTR 0.18 TCGA-D5-6928-01 7 100348490 100348490 G A ZAN Missense_Mutation p.V498I 0.11 benign(0.202) TCGA-D5-6928-01 7 100696672 100696672 C T MUC17 Missense_Mutation p.P4440S 0.12 unknown(0) TCGA-D5-6928-01 7 102100238 102100238 C T ALKBH4 Missense_Mutation p.R45H 0.20 tolerated(0.34) benign(0.001) TCGA-D5-6928-01 7 102760426 102760426 G A NAPEPLD Missense_Mutation p.A180V 0.11 tolerated(0.16) benign(0.34) TCGA-D5-6928-01 7 103162502 103162502 G A RELN Silent p.A2545A 0.11 TCGA-D5-6928-01 7 105098320 105098320 C T PUS7 Missense_Mutation p.A635T 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 7 105255249 105255249 G A ATXN7L1 Missense_Mutation p.A511V 0.25 tolerated(0.14) probably_damaging(0.994) TCGA-D5-6928-01 7 106545829 106545829 C T PIK3CG Silent p.A1102A 0.09 TCGA-D5-6928-01 7 107214231 107214231 G A DUS4L Silent p.A107A 0.11 TCGA-D5-6928-01 7 107743496 107743496 C T LAMB4 Silent p.A391A 0.09 TCGA-D5-6928-01 7 1098625 1098625 C T GPR146 3'UTR 0.13 TCGA-D5-6928-01 7 110764648 110764648 T C LRRN3 Missense_Mutation p.V607A 0.14 deleterious(0.01) benign(0.09) TCGA-D5-6928-01 7 112424013 112424013 G T TMEM168 Missense_Mutation p.L290I 0.16 tolerated(0.41) benign(0.04) TCGA-D5-6928-01 7 114582352 114582352 T C MDFIC Silent p.T148T 0.14 TCGA-D5-6928-01 7 11581241 11581241 G A THSD7A Missense_Mutation p.R543W 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 7 116862961 116862961 A G ST7 Missense_Mutation p.K562R 0.14 tolerated_low_confidence(0.26) benign(0.039) TCGA-D5-6928-01 7 116955205 116955205 C T WNT2 Missense_Mutation p.A170T 0.14 tolerated(0.28) benign(0.027) TCGA-D5-6928-01 7 119914691 119914691 C T KCND2 Missense_Mutation p.A2V 0.15 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D5-6928-01 7 120935752 120935752 A G CPED1 3'UTR 0.17 TCGA-D5-6928-01 7 123269010 123269010 C T ASB15 Missense_Mutation p.A321V 0.18 tolerated(0.96) benign(0.005) TCGA-D5-6928-01 7 12668793 12668793 G A SCIN Missense_Mutation p.G422D 0.14 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 7 127222666 127222666 C T GCC1 Missense_Mutation p.R577H 0.24 tolerated(0.07) possibly_damaging(0.882) TCGA-D5-6928-01 7 127725767 127725767 C T SND1 Missense_Mutation p.R747C 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 7 128607334 128607334 C A TNPO3 Missense_Mutation p.S904I 0.16 tolerated(0.12) benign(0.179) TCGA-D5-6928-01 7 130044436 130044436 C T CEP41 Missense_Mutation p.A131T 0.08 tolerated(0.19) benign(0.003) TCGA-D5-6928-01 7 131913148 131913148 G A PLXNA4 Missense_Mutation p.T562M 0.22 deleterious(0.03) possibly_damaging(0.561) TCGA-D5-6928-01 7 132192313 132192313 C T PLXNA4 Silent p.T380T 0.27 TCGA-D5-6928-01 7 133884059 133884059 C T LRGUK Missense_Mutation p.R545W 0.12 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 7 13935553 13935553 C T ETV1 Missense_Mutation p.A458T 0.08 tolerated(0.25) benign(0.005) TCGA-D5-6928-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-D5-6928-01 7 142612128 142612128 C T TRPV5 Missense_Mutation p.V459M 0.16 deleterious(0) probably_damaging(0.994) TCGA-D5-6928-01 7 148544316 148544316 T A EZH2 Silent p.R25R 0.09 TCGA-D5-6928-01 7 148851187 148851187 A T ZNF398 Missense_Mutation p.I59F 0.20 tolerated(0.05) benign(0.045) TCGA-D5-6928-01 7 149480056 149480056 G T SSPO RNA 0.15 TCGA-D5-6928-01 7 149489281 149489281 C A SSPO RNA 0.09 TCGA-D5-6928-01 7 149515019 149515019 C A SSPO RNA 0.13 TCGA-D5-6928-01 7 149545310 149545311 - C ZNF862 Frame_Shift_Ins p.G246Rfs*7 0.15 TCGA-D5-6928-01 7 150647453 150647453 C T KCNH2 Missense_Mutation p.R734H 0.17 deleterious(0) possibly_damaging(0.893) TCGA-D5-6928-01 7 150690881 150690881 C T NOS3 5'UTR 0.12 TCGA-D5-6928-01 7 150773780 150773780 G - FASTK 3'UTR 0.17 TCGA-D5-6928-01 7 150884766 150884766 A G ASB10 5'Flank 0.08 TCGA-D5-6928-01 7 150934597 150934599 CTT - CHPF2 In_Frame_Del p.F384del 0.17 TCGA-D5-6928-01 7 151879593 151879594 - TGC KMT2C In_Frame_Ins p.Q1787dup 0.13 TCGA-D5-6928-01 7 151902290 151902290 G A KMT2C Missense_Mutation p.R1288W 0.15 probably_damaging(0.997) TCGA-D5-6928-01 7 152012245 152012245 G A KMT2C Nonsense_Mutation p.R190* 0.14 TCGA-D5-6928-01 7 15601421 15601421 C T AGMO Missense_Mutation p.R17H 0.09 deleterious(0.03) possibly_damaging(0.649) TCGA-D5-6928-01 7 15725558 15725558 G A MEOX2 Missense_Mutation p.A157V 0.19 tolerated(0.33) benign(0) TCGA-D5-6928-01 7 16415811 16415811 C T ISPD Missense_Mutation p.G197D 0.14 deleterious(0.01) possibly_damaging(0.745) TCGA-D5-6928-01 7 16502378 16502378 C T SOSTDC1 Missense_Mutation p.R139H 0.15 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 7 20198049 20198049 T - MACC1 Frame_Shift_Del p.K645Nfs*2 0.16 TCGA-D5-6928-01 7 21631022 21631022 A - DNAH11 Frame_Shift_Del p.N833Tfs*2 0.14 TCGA-D5-6928-01 7 21781665 21781665 G T DNAH11 Missense_Mutation p.G2686C 0.11 possibly_damaging(0.834) TCGA-D5-6928-01 7 21939035 21939035 C T DNAH11 Silent p.S4384S 0.14 TCGA-D5-6928-01 7 2472704 2472704 C T CHST12 Missense_Mutation p.R144C 0.17 deleterious(0) probably_damaging(0.978) TCGA-D5-6928-01 7 24903123 24903123 C T OSBPL3 Missense_Mutation p.A257T 0.18 tolerated(0.69) benign(0.094) TCGA-D5-6928-01 7 2584568 2584568 G A BRAT1 Silent p.S135S 0.19 TCGA-D5-6928-01 7 26236049 26236049 T C HNRNPA2B1 Silent p.G222G 0.10 TCGA-D5-6928-01 7 27140784 27140784 G A HOXA2 Missense_Mutation p.T231M 0.15 deleterious(0.04) benign(0.186) TCGA-D5-6928-01 7 2984021 2984021 C T CARD11 Missense_Mutation p.R170H 0.23 tolerated(0.13) benign(0.232) TCGA-D5-6928-01 7 30118510 30118510 G - PLEKHA8 3'UTR 0.39 TCGA-D5-6928-01 7 33192358 33192359 - C BBS9 Frame_Shift_Ins p.H55Pfs*47 0.21 TCGA-D5-6928-01 7 38725707 38725707 C T FAM183B 5'UTR 0.16 TCGA-D5-6928-01 7 43484180 43484180 C T HECW1 Missense_Mutation p.A470V 0.24 tolerated_low_confidence(0.3) benign(0.013) TCGA-D5-6928-01 7 44619209 44619209 G A TMED4 Nonsense_Mutation p.R185* 0.11 TCGA-D5-6928-01 7 44800179 44800179 C G ZMIZ2 Missense_Mutation p.H409Q 0.12 tolerated(0.72) benign(0.027) TCGA-D5-6928-01 7 45121462 45121462 C T NACAD Silent p.S1359S 0.15 TCGA-D5-6928-01 7 47874777 47874777 G A PKD1L1 Missense_Mutation p.A2003V 0.16 tolerated(0.15) benign(0.194) TCGA-D5-6928-01 7 47971625 47971625 C T PKD1L1 Missense_Mutation p.A143T 0.21 tolerated_low_confidence(0.35) benign(0.001) TCGA-D5-6928-01 7 4900537 4900537 T C PAPOLB Missense_Mutation p.D301G 0.15 deleterious(0) possibly_damaging(0.595) TCGA-D5-6928-01 7 50136021 50136021 G T C7orf72 Missense_Mutation p.G114C 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 7 54610429 54610429 G - VSTM2A Frame_Shift_Del p.I4Sfs*33 0.17 TCGA-D5-6928-01 7 55272964 55272964 C T EGFR Missense_Mutation p.S1096F 0.22 tolerated(0.18) benign(0.001) TCGA-D5-6928-01 7 55910723 55910723 C T SEPT14 Missense_Mutation p.R157H 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 7 56006767 56006767 G A ZNF713 Missense_Mutation p.A121T 0.15 tolerated(1) benign(0) TCGA-D5-6928-01 7 5645008 5645008 C T FSCN1 Missense_Mutation p.A462V 0.18 deleterious(0.04) possibly_damaging(0.652) TCGA-D5-6928-01 7 65554300 65554300 G A ASL Missense_Mutation p.S319N 0.17 deleterious(0.01) benign(0.222) TCGA-D5-6928-01 7 65557829 65557829 G A ASL Missense_Mutation p.G442D 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 7 65705495 65705495 C T TPST1 Missense_Mutation p.A28V 0.23 tolerated_low_confidence(0.73) benign(0.006) TCGA-D5-6928-01 7 66532389 66532389 C T TYW1 Missense_Mutation p.R425W 0.09 deleterious(0.01) possibly_damaging(0.499) TCGA-D5-6928-01 7 72419397 72419397 C - POM121 3'UTR 0.13 TCGA-D5-6928-01 7 73021716 73021716 C T MLXIPL Missense_Mutation p.R173H 0.11 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 7 74211400 74211400 G A GTF2IRD2 Silent p.S817S 0.19 TCGA-D5-6928-01 7 7557450 7557452 CTC - COL28A1 In_Frame_Del p.G277del 0.12 TCGA-D5-6928-01 7 76026899 76026899 G A SRCRB4D Silent p.C268C 0.13 TCGA-D5-6928-01 7 76984711 76984711 G T GSAP Missense_Mutation p.P386H 0.18 tolerated(0.15) probably_damaging(0.938) TCGA-D5-6928-01 7 77824191 77824191 G A MAGI2 Nonsense_Mutation p.Q757* 0.14 TCGA-D5-6928-01 7 79082533 79082533 C - MAGI2 Frame_Shift_Del p.G35Afs*13 0.21 TCGA-D5-6928-01 7 80418837 80418837 C T SEMA3C Missense_Mutation p.G380E 0.12 deleterious(0.02) probably_damaging(1) TCGA-D5-6928-01 7 8110646 8110646 G T GLCCI1 Missense_Mutation p.Q354H 0.25 tolerated(0.16) benign(0.035) TCGA-D5-6928-01 7 82508761 82508761 T G PCLO Silent p.R4516R 0.16 TCGA-D5-6928-01 7 82581470 82581470 G A PCLO Silent p.T2933T 0.14 TCGA-D5-6928-01 7 87037495 87037495 C T ABCB4 Missense_Mutation p.R1046Q 0.29 deleterious(0) probably_damaging(0.918) TCGA-D5-6928-01 7 90419921 90419921 C A CDK14 Silent p.I148I 0.17 TCGA-D5-6928-01 7 90895510 90895510 G A FZD1 Missense_Mutation p.A439T 0.15 deleterious(0) probably_damaging(0.98) TCGA-D5-6928-01 7 91682257 91682257 T C AKAP9 Silent p.S1862S 0.18 TCGA-D5-6928-01 7 93067575 93067575 C T CALCR Silent p.P304P 0.13 TCGA-D5-6928-01 7 99457596 99457596 G A CYP3A43 Missense_Mutation p.A337T 0.16 tolerated(0.44) benign(0.011) TCGA-D5-6928-01 7 99699690 99699690 G T AP4M1 Intron 0.18 TCGA-D5-6928-01 7 99971860 99971860 G A PILRA Silent p.P86P 0.17 TCGA-D5-6928-01 8 100866425 100866425 C T VPS13B Missense_Mutation p.A3628V 0.17 deleterious(0.03) possibly_damaging(0.499) TCGA-D5-6928-01 8 101730455 101730455 G A PABPC1 Missense_Mutation p.R83C 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-D5-6928-01 8 103277399 103277399 T C UBR5 Silent p.K2510K 0.25 TCGA-D5-6928-01 8 103292692 103292692 C T UBR5 Silent p.T1977T 0.18 TCGA-D5-6928-01 8 105001565 105001565 G A RIMS2 Missense_Mutation p.R987H 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.897) TCGA-D5-6928-01 8 105361049 105361049 G T DCSTAMP Missense_Mutation p.G90V 0.10 deleterious(0) probably_damaging(0.978) TCGA-D5-6928-01 8 105507378 105507378 G A LRP12 Missense_Mutation p.P547L 0.11 deleterious(0) probably_damaging(0.997) TCGA-D5-6928-01 8 105507476 105507476 G A LRP12 Intron 0.10 TCGA-D5-6928-01 8 105601063 105601063 G A LRP12 Silent p.F21F 0.17 TCGA-D5-6928-01 8 107705073 107705073 A G OXR1 Missense_Mutation p.K216E 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 8 109491273 109491273 A - EMC2 Frame_Shift_Del p.T249Rfs*6 0.15 TCGA-D5-6928-01 8 110437368 110437368 G A PKHD1L1 Missense_Mutation p.G918S 0.13 tolerated(0.1) benign(0.267) TCGA-D5-6928-01 8 110654962 110654962 C T SYBU Missense_Mutation p.C75Y 0.12 deleterious(0.04) probably_damaging(0.971) TCGA-D5-6928-01 8 113364765 113364765 T C CSMD3 Splice_Site p.X2046_splice 0.10 TCGA-D5-6928-01 8 117767952 117767952 C A EIF3H Missense_Mutation p.G29C 0.12 deleterious(0.02) benign(0.14) TCGA-D5-6928-01 8 121382636 121382636 G A COL14A1 Intron 0.17 TCGA-D5-6928-01 8 125058133 125058133 C T FER1L6 Silent p.S905S 0.19 TCGA-D5-6928-01 8 125562112 125562113 - C NDUFB9 Frame_Shift_Ins p.R175Pfs*33 0.10 TCGA-D5-6928-01 8 133141628 133141628 C T KCNQ3 Missense_Mutation p.A834T 0.12 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 8 141521678 141521678 T C CHRAC1 Missense_Mutation p.I27T 0.10 deleterious(0.03) possibly_damaging(0.838) TCGA-D5-6928-01 8 143831876 143831876 G A LYPD2 Missense_Mutation p.T68M 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-D5-6928-01 8 143957174 143957174 T C CYP11B1 Missense_Mutation p.T359A 0.13 tolerated(0.16) benign(0.155) TCGA-D5-6928-01 8 14412419 14412419 T C SGCZ Missense_Mutation p.Y19C 0.13 deleterious(0) probably_damaging(0.935) TCGA-D5-6928-01 8 144642777 144642777 C A GSDMD Missense_Mutation p.L139M 0.09 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 8 144776264 144776264 C T ZNF707 Missense_Mutation p.T227M 0.21 deleterious(0) probably_damaging(0.98) TCGA-D5-6928-01 8 144900161 144900161 C T PUF60 Missense_Mutation p.V230M 0.22 deleterious(0.04) possibly_damaging(0.668) TCGA-D5-6928-01 8 144993153 144993153 C T PLEC Silent p.R3749R 0.19 TCGA-D5-6928-01 8 145538020 145538025 CCCACC - HSF1 3'UTR 0.14 TCGA-D5-6928-01 8 145584505 145584505 A G SLC52A2 Missense_Mutation p.K390E 0.11 deleterious(0) probably_damaging(0.998) TCGA-D5-6928-01 8 145621693 145621693 G - CPSF1 Frame_Shift_Del p.P950Lfs*6 0.13 TCGA-D5-6928-01 8 145773213 145773213 C T ARHGAP39 Silent p.A419A 0.26 TCGA-D5-6928-01 8 146076709 146076709 C A COMMD5 Silent p.G5G 0.16 TCGA-D5-6928-01 8 146107212 146107212 C T ZNF250 Silent p.G457G 0.14 TCGA-D5-6928-01 8 17092275 17092276 - A CNOT7 Frame_Shift_Ins p.P190Sfs*5 0.14 TCGA-D5-6928-01 8 18080922 18080922 T A NAT1 3'UTR 0.26 TCGA-D5-6928-01 8 1812574 1812575 TC - ARHGEF10 Frame_Shift_Del p.L174Efs*9 0.15 TCGA-D5-6928-01 8 18658839 18658840 - CT PSD3 Frame_Shift_Ins p.V655Efs*3 0.10 TCGA-D5-6928-01 8 19709195 19709195 T C INTS10 Missense_Mutation p.V671A 0.12 tolerated(0.21) possibly_damaging(0.825) TCGA-D5-6928-01 8 21978393 21978393 G A HR Missense_Mutation p.P816S 0.24 tolerated(0.16) probably_damaging(0.999) TCGA-D5-6928-01 8 22481475 22481475 G A BIN3 Missense_Mutation p.R190C 0.20 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 8 22548953 22548953 G T EGR3 Missense_Mutation p.P66Q 0.15 tolerated(0.7) benign(0.001) TCGA-D5-6928-01 8 24193010 24193010 C T ADAM28 Missense_Mutation p.P475S 0.18 deleterious(0.05) benign(0.367) TCGA-D5-6928-01 8 24771944 24771944 C T NEFM Missense_Mutation p.A213V 0.17 deleterious(0) unknown(0) TCGA-D5-6928-01 8 24772333 24772333 C T NEFM Missense_Mutation p.R343W 0.30 deleterious(0) unknown(0) TCGA-D5-6928-01 8 26721837 26721837 C - ADRA1A Frame_Shift_Del p.G217Afs*16 0.16 TCGA-D5-6928-01 8 27364393 27364393 T - EPHX2 Frame_Shift_Del p.L183Wfs*8 0.21 TCGA-D5-6928-01 8 2796164 2796164 T C CSMD1 Silent p.T3546T 0.13 TCGA-D5-6928-01 8 3038655 3038655 G A CSMD1 Missense_Mutation p.A1901V 0.07 probably_damaging(0.939) TCGA-D5-6928-01 8 30703516 30703516 T - TEX15 Frame_Shift_Del p.A1007Lfs*12 0.17 TCGA-D5-6928-01 8 35608277 35608277 G A UNC5D Missense_Mutation p.D705N 0.17 tolerated(0.08) benign(0.006) TCGA-D5-6928-01 8 37691605 37691605 G - GPR124 Frame_Shift_Del p.A525Pfs*12 0.11 TCGA-D5-6928-01 8 37729745 37729745 C T RAB11FIP1 Missense_Mutation p.A859T 0.16 tolerated(1) benign(0) TCGA-D5-6928-01 8 38005730 38005732 CTT - STAR In_Frame_Del p.K98del 0.16 TCGA-D5-6928-01 8 39079187 39079187 A G ADAM32 Missense_Mutation p.K431R 0.20 tolerated(0.39) benign(0.007) TCGA-D5-6928-01 8 42026549 42026549 C A AP3M2 Silent p.T409T 0.22 TCGA-D5-6928-01 8 42188459 42188461 GAA - IKBKB In_Frame_Del p.E748del 0.17 TCGA-D5-6928-01 8 442651 442651 T - TDRP Frame_Shift_Del p.K102Nfs*65 0.12 TCGA-D5-6928-01 8 53055559 53055559 G T ST18 Missense_Mutation p.P700H 0.16 deleterious(0) possibly_damaging(0.759) TCGA-D5-6928-01 8 54163587 54163587 G - OPRK1 Frame_Shift_Del p.P4Rfs*65 0.32 TCGA-D5-6928-01 8 61732565 61732565 G A CHD7 Splice_Site p.X872_splice 0.40 TCGA-D5-6928-01 8 623401 623401 G A ERICH1 Silent p.S317S 0.14 TCGA-D5-6928-01 8 623517 623517 C A ERICH1 Nonsense_Mutation p.E279* 0.15 TCGA-D5-6928-01 8 6378805 6378805 T A ANGPT2 Missense_Mutation p.E231D 0.11 deleterious(0) benign(0.405) TCGA-D5-6928-01 8 6612621 6612621 C T AGPAT5 Silent p.I265I 0.19 TCGA-D5-6928-01 8 67342220 67342220 C T RRS1 Missense_Mutation p.T285I 0.42 tolerated(0.08) possibly_damaging(0.855) TCGA-D5-6928-01 8 67484760 67484760 G A MYBL1 Missense_Mutation p.A562V 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 8 69009359 69009359 G A PREX2 Missense_Mutation p.D826N 0.15 tolerated_low_confidence(0.17) probably_damaging(0.99) TCGA-D5-6928-01 8 70617426 70617426 G T SLCO5A1 Missense_Mutation p.L488I 0.10 tolerated(0.21) possibly_damaging(0.506) TCGA-D5-6928-01 8 75276557 75276557 T C GDAP1 Silent p.L344L 0.16 TCGA-D5-6928-01 8 79598824 79598824 T A ZC2HC1A Silent p.P111P 0.13 TCGA-D5-6928-01 8 81412325 81412325 C T ZBTB10 Silent p.V523V 0.10 TCGA-D5-6928-01 8 82606597 82606597 G T SLC10A5 Missense_Mutation p.A204E 0.16 deleterious(0.04) probably_damaging(0.922) TCGA-D5-6928-01 8 86047208 86047209 - A LRRCC1 Frame_Shift_Ins p.T701Nfs*8 0.19 TCGA-D5-6928-01 8 87242074 87242074 C T SLC7A13 Missense_Mutation p.V145I 0.10 tolerated(0.06) benign(0.129) TCGA-D5-6928-01 8 88885685 88885685 C T DCAF4L2 Missense_Mutation p.R172H 0.20 tolerated(0.15) benign(0.004) TCGA-D5-6928-01 8 95262748 95262748 G A GEM Silent p.N227N 0.16 TCGA-D5-6928-01 8 97621679 97621679 G A SDC2 Missense_Mutation p.R170H 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 8 97892129 97892129 G T CPQ Missense_Mutation p.G249W 0.15 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 8 99440279 99440279 C T KCNS2 Silent p.G24G 0.17 TCGA-D5-6928-01 8 99440360 99440360 G A KCNS2 Silent p.S51S 0.20 TCGA-D5-6928-01 8 99440652 99440652 G A KCNS2 Missense_Mutation p.D149N 0.18 tolerated(0.06) probably_damaging(0.985) TCGA-D5-6928-01 9 100437826 100437826 C T XPA Silent p.T239T 0.11 TCGA-D5-6928-01 9 100618100 100618100 C T FOXE1 3'UTR 0.26 TCGA-D5-6928-01 9 100862364 100862364 G A TRIM14 Missense_Mutation p.A129V 0.30 deleterious(0.02) benign(0.132) TCGA-D5-6928-01 9 103090148 103090148 G A TEX10 Silent p.I574I 0.15 TCGA-D5-6928-01 9 103340529 103340529 C T MURC Missense_Mutation p.T35I 0.25 deleterious(0) probably_damaging(0.967) TCGA-D5-6928-01 9 104192194 104192194 C T ALDOB Missense_Mutation p.R56H 0.13 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 9 104302787 104302787 C T RNF20 Missense_Mutation p.R105C 0.29 deleterious(0) benign(0) TCGA-D5-6928-01 9 107267333 107267333 G A OR13F1 Missense_Mutation p.A264T 0.12 deleterious(0.03) benign(0.046) TCGA-D5-6928-01 9 107457554 107457554 C T OR13D1 Silent p.Y284Y 0.17 TCGA-D5-6928-01 9 108118619 108118619 G A SLC44A1 Missense_Mutation p.M209I 0.15 deleterious(0.03) benign(0.007) TCGA-D5-6928-01 9 113431123 113431123 G A MUSK 5'UTR 0.13 TCGA-D5-6928-01 9 116269630 116269630 A C RGS3 Silent p.P383P 0.24 TCGA-D5-6928-01 9 117094197 117094197 C T ORM2 Silent p.T176T 0.23 TCGA-D5-6928-01 9 117962 117962 G A FOXD4 Missense_Mutation p.P53L 0.13 deleterious(0.01) benign(0.003) TCGA-D5-6928-01 9 119187871 119187871 A - ASTN2 3'UTR 0.15 TCGA-D5-6928-01 9 121929686 121929686 G A BRINP1 Silent p.D654D 0.14 TCGA-D5-6928-01 9 123632137 123632137 C T PHF19 Missense_Mutation p.A151T 0.11 tolerated(0.1) probably_damaging(0.959) TCGA-D5-6928-01 9 124979540 124979540 G A LHX6 Silent p.C163C 0.30 TCGA-D5-6928-01 9 125377338 125377338 G A OR1Q1 Missense_Mutation p.A108T 0.13 tolerated(0.13) benign(0.005) TCGA-D5-6928-01 9 125437763 125437763 G A OR1L3 Missense_Mutation p.A119T 0.27 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 9 126118546 126118546 C T CRB2 Silent p.L3L 0.14 TCGA-D5-6928-01 9 127566426 127566429 GGCA - OLFML2A Frame_Shift_Del p.R326Pfs*80 0.29 TCGA-D5-6928-01 9 127572544 127572544 G A OLFML2A Silent p.T604T 0.24 TCGA-D5-6928-01 9 127618871 127618871 G A WDR38 Missense_Mutation p.G204S 0.09 deleterious(0.02) probably_damaging(0.942) TCGA-D5-6928-01 9 128069756 128069756 C A GAPVD1 Missense_Mutation p.S394Y 0.22 deleterious(0.01) possibly_damaging(0.8) TCGA-D5-6928-01 9 128322077 128322077 C T MAPKAP1 Missense_Mutation p.S228N 0.14 tolerated(0.79) benign(0.002) TCGA-D5-6928-01 9 129645443 129645443 T - ZBTB34 3'UTR 0.41 TCGA-D5-6928-01 9 130119578 130119578 G A GARNL3 Silent p.V672V 0.30 TCGA-D5-6928-01 9 130165011 130165011 C - SLC2A8 Frame_Shift_Del p.I237Sfs*27 0.26 TCGA-D5-6928-01 9 130476435 130476435 C T PTRH1 Missense_Mutation p.D197N 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-D5-6928-01 9 130649774 130649774 G - ST6GALNAC6 Frame_Shift_Del p.N268Tfs*109 0.17 TCGA-D5-6928-01 9 130826012 130826012 C T NAIF1 Missense_Mutation p.A227T 0.21 tolerated_low_confidence(0.06) probably_damaging(0.985) TCGA-D5-6928-01 9 13107075 13107075 G A MPDZ Silent p.G2005G 0.22 TCGA-D5-6928-01 9 131247126 131247126 G T ODF2 Missense_Mutation p.E417D 0.16 deleterious(0.02) probably_damaging(0.976) TCGA-D5-6928-01 9 131482504 131482504 A C PKN3 Missense_Mutation p.K800T 0.22 deleterious(0.02) benign(0.409) TCGA-D5-6928-01 9 131484767 131484767 C T ZDHHC12 Missense_Mutation p.A63T 0.15 tolerated(0.4) benign(0.05) TCGA-D5-6928-01 9 131858407 131858407 C T CRAT Missense_Mutation p.R512H 0.28 tolerated(0.39) benign(0.001) TCGA-D5-6928-01 9 132397680 132397680 C T NTMT1 Silent p.A203A 0.29 TCGA-D5-6928-01 9 132630366 132630366 C T USP20 Missense_Mutation p.T258M 0.31 tolerated(0.1) benign(0.202) TCGA-D5-6928-01 9 133286005 133286005 C T HMCN2 Silent p.G19G 0.26 TCGA-D5-6928-01 9 133769065 133769065 C - QRFP Frame_Shift_Del p.G54Vfs*6 0.22 TCGA-D5-6928-01 9 134312033 134312033 C T PRRC2B Missense_Mutation p.P107L 0.32 tolerated(0.2) benign(0.032) TCGA-D5-6928-01 9 134454800 134454800 C T RAPGEF1 3'UTR 0.27 TCGA-D5-6928-01 9 135073715 135073715 C T NTNG2 Silent p.R192R 0.24 TCGA-D5-6928-01 9 135073815 135073815 G A NTNG2 Missense_Mutation p.D226N 0.14 tolerated(0.25) benign(0.169) TCGA-D5-6928-01 9 136291318 136291318 G T ADAMTS13 Splice_Site p.X180_splice 0.33 TCGA-D5-6928-01 9 136501528 136501528 G A DBH Missense_Mutation p.G12D 0.26 deleterious_low_confidence(0.04) benign(0.034) TCGA-D5-6928-01 9 137293658 137293658 C - RXRA Frame_Shift_Del p.M72Wfs*27 0.23 TCGA-D5-6928-01 9 138378081 138378081 C T PPP1R26 Silent p.T575T 0.11 TCGA-D5-6928-01 9 138713976 138713976 G A CAMSAP1 Missense_Mutation p.A844V 0.17 deleterious(0) benign(0.334) TCGA-D5-6928-01 9 139258743 139258743 C T CARD9 3'UTR 0.22 TCGA-D5-6928-01 9 139395119 139395119 C T NOTCH1 Missense_Mutation p.R1940H 0.29 deleterious(0) probably_damaging(0.966) TCGA-D5-6928-01 9 139889909 139889909 G A CLIC3 Missense_Mutation p.T85M 0.11 tolerated(0.11) benign(0.031) TCGA-D5-6928-01 9 139935421 139935421 G A NPDC1 Missense_Mutation p.S134L 0.16 tolerated(0.21) probably_damaging(0.93) TCGA-D5-6928-01 9 139945517 139945517 C - ENTPD2 Frame_Shift_Del p.G204Vfs*171 0.18 TCGA-D5-6928-01 9 140069728 140069728 G A ANAPC2 Silent p.G739G 0.26 TCGA-D5-6928-01 9 140126217 140126217 G - SLC34A3 Frame_Shift_Del p.E22Kfs*4 0.27 TCGA-D5-6928-01 9 140175016 140175016 C - TOR4A 3'UTR 0.13 TCGA-D5-6928-01 9 15506590 15506593 GTTT - PSIP1 Frame_Shift_Del p.K39Yfs*14 0.33 TCGA-D5-6928-01 9 17409416 17409416 C T CNTLN Missense_Mutation p.T914I 0.10 tolerated(0.26) benign(0.002) TCGA-D5-6928-01 9 20820302 20820302 A T FOCAD Intron 0.34 TCGA-D5-6928-01 9 2645059 2645059 C T VLDLR Missense_Mutation p.A430V 0.29 tolerated(0.7) possibly_damaging(0.61) TCGA-D5-6928-01 9 32784344 32784344 G A TMEM215 Missense_Mutation p.A55T 0.29 deleterious(0) probably_damaging(0.996) TCGA-D5-6928-01 9 33271210 33271210 G A CHMP5 Missense_Mutation p.D126N 0.24 tolerated(0.13) benign(0.127) TCGA-D5-6928-01 9 33442242 33442242 G - AQP3 Intron 0.27 TCGA-D5-6928-01 9 33466944 33466944 C - NOL6 Frame_Shift_Del p.G639Afs*10 0.18 TCGA-D5-6928-01 9 33473836 33473836 C T NOL6 Missense_Mutation p.G2E 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-D5-6928-01 9 35044319 35044319 C - C9orf131 Frame_Shift_Del p.P566Qfs*62 0.14 TCGA-D5-6928-01 9 37002759 37002759 C T PAX5 Missense_Mutation p.V164M 0.20 tolerated(0.11) possibly_damaging(0.867) TCGA-D5-6928-01 9 39140525 39140525 T C CNTNAP3 Missense_Mutation p.N623D 0.12 tolerated(0.06) benign(0.111) TCGA-D5-6928-01 9 5335389 5335389 G A RLN1 Silent p.A140A 0.18 TCGA-D5-6928-01 9 7013990 7013990 G A KDM4C Missense_Mutation p.R724Q 0.19 tolerated(1) benign(0.012) TCGA-D5-6928-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.10 deleterious(0.01) possibly_damaging(0.573) TCGA-D5-6928-01 9 712642 712642 C T KANK1 Missense_Mutation p.R626W 0.30 tolerated(0.06) probably_damaging(0.95) TCGA-D5-6928-01 9 71398309 71398309 G A FAM122A 3'UTR 0.29 TCGA-D5-6928-01 9 71853658 71853658 T A TJP2 Missense_Mutation p.S801T 0.38 tolerated(0.07) benign(0.121) TCGA-D5-6928-01 9 73213363 73213363 C T TRPM3 Missense_Mutation p.G995D 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6928-01 9 73376237 73376237 A G TRPM3 Intron 0.16 TCGA-D5-6928-01 9 73426150 73426150 C T TRPM3 Intron 0.27 TCGA-D5-6928-01 9 75406942 75406942 C T TMC1 Silent p.Y455Y 0.17 TCGA-D5-6928-01 9 75445427 75445428 - A TMC1 Frame_Shift_Ins p.K733Efs*120 0.14 TCGA-D5-6928-01 9 77339525 77339525 C T TRPM6 3'UTR 0.17 TCGA-D5-6928-01 9 77377702 77377702 C T TRPM6 Silent p.V1295V 0.09 TCGA-D5-6928-01 9 79270373 79270373 G A PRUNE2 Silent p.G2774G 0.18 TCGA-D5-6928-01 9 79322697 79322697 C T PRUNE2 Missense_Mutation p.S1498N 0.23 tolerated(0.19) benign(0.02) TCGA-D5-6928-01 9 82337413 82337413 G T TLE4 Silent p.G678G 0.11 TCGA-D5-6928-01 9 84200448 84200448 G A TLE1 Silent p.C700C 0.28 TCGA-D5-6928-01 9 85863114 85863114 G A FRMD3 Missense_Mutation p.R505C 0.11 deleterious(0.04) possibly_damaging(0.727) TCGA-D5-6928-01 9 90497780 90497780 T A SPATA31E1 5'UTR 0.48 TCGA-D5-6928-01 9 91605992 91605992 C T C9orf47 Nonsense_Mutation p.R28* 0.32 TCGA-D5-6928-01 9 94495436 94495436 C T ROR2 Missense_Mutation p.R302H 0.33 deleterious(0.04) possibly_damaging(0.836) TCGA-D5-6928-01 9 97063179 97063179 G T ZNF169 Nonsense_Mutation p.G447* 0.16 TCGA-D5-6928-01 X 102962335 102962335 A T GLRA4 Missense_Mutation p.S397R 0.37 tolerated_low_confidence(0.22) benign(0.03) TCGA-D5-6928-01 X 103434293 103434293 G A FAM199X Missense_Mutation p.R334Q 0.19 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-D5-6928-01 X 106846468 106846468 G A FRMPD3 Silent p.Q1766Q 0.29 TCGA-D5-6928-01 X 11272733 11272733 T C ARHGAP6 Missense_Mutation p.Q228R 0.34 tolerated(0.07) possibly_damaging(0.561) TCGA-D5-6928-01 X 12157065 12157065 G A FRMPD4 5'UTR 0.33 TCGA-D5-6928-01 X 125686808 125686808 T C DCAF12L1 5'UTR 0.19 TCGA-D5-6928-01 X 129147138 129147138 C T BCORL1 Silent p.A130A 0.27 TCGA-D5-6928-01 X 132160412 132160413 - T USP26 Frame_Shift_Ins p.G613Rfs*6 0.27 TCGA-D5-6928-01 X 135592265 135592265 G A HTATSF1 Missense_Mutation p.V317M 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-D5-6928-01 X 135741312 135741312 T C CD40LG Missense_Mutation p.V175A 0.41 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 X 140270811 140270811 A G LDOC1 Silent p.D132D 0.23 TCGA-D5-6928-01 X 148037388 148037388 C T AFF2 Missense_Mutation p.P605S 0.44 tolerated(0.17) possibly_damaging(0.54) TCGA-D5-6928-01 X 149639501 149639501 G A MAMLD1 Silent p.P527P 0.28 TCGA-D5-6928-01 X 151900025 151900025 C T MAGEA12 Missense_Mutation p.R259Q 0.36 tolerated(0.35) benign(0.044) TCGA-D5-6928-01 X 152614375 152614375 T - ZNF275 3'UTR 0.23 TCGA-D5-6928-01 X 153035373 153035373 C - PLXNB3 Frame_Shift_Del p.R561Afs*67 0.29 TCGA-D5-6928-01 X 153041470 153041470 C T PLXNB3 Silent p.D1533D 0.33 TCGA-D5-6928-01 X 153209775 153209775 G A RENBP Silent p.H41H 0.26 TCGA-D5-6928-01 X 153295933 153295933 T - MECP2 Frame_Shift_Del p.K461Sfs*33 0.20 TCGA-D5-6928-01 X 153762341 153762341 G A G6PD Missense_Mutation p.R257W 0.20 deleterious(0) probably_damaging(0.991) TCGA-D5-6928-01 X 154009555 154009555 G A MPP1 Missense_Mutation p.P395S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6928-01 X 1544492 1544492 T C ASMTL Missense_Mutation p.D329G 0.20 tolerated(0.76) benign(0.013) TCGA-D5-6928-01 X 155009085 155009086 TA - SPRY3 3'UTR 0.14 TCGA-D5-6928-01 X 155009887 155009887 T A SPRY3 3'UTR 0.16 TCGA-D5-6928-01 X 155010382 155010382 T A SPRY3 3'UTR 0.14 TCGA-D5-6928-01 X 155011796 155011796 A G SPRY3 3'UTR 0.13 TCGA-D5-6928-01 X 155012056 155012056 C - SPRY3 3'UTR 0.09 TCGA-D5-6928-01 X 19391706 19391706 C T MAP3K15 Missense_Mutation p.A961T 0.46 tolerated(0.61) benign(0.001) TCGA-D5-6928-01 X 21519702 21519702 C T CNKSR2 Missense_Mutation p.T269I 0.10 deleterious(0) probably_damaging(0.999) TCGA-D5-6928-01 X 23397938 23397938 C T PTCHD1 Silent p.G194G 0.32 TCGA-D5-6928-01 X 2408092 2408092 G - ZBED1 Frame_Shift_Del p.N224Tfs*10 0.22 TCGA-D5-6928-01 X 2408166 2408166 C T ZBED1 Missense_Mutation p.D199N 0.19 deleterious(0) probably_damaging(0.961) TCGA-D5-6928-01 X 2408490 2408490 C T ZBED1 Missense_Mutation p.A91T 0.20 tolerated(0.18) probably_damaging(0.997) TCGA-D5-6928-01 X 39932891 39932891 C T BCOR Missense_Mutation p.A570T 0.33 tolerated(0.08) possibly_damaging(0.838) TCGA-D5-6928-01 X 41586415 41586415 A - GPR82 Frame_Shift_Del p.T48Hfs*11 0.30 TCGA-D5-6928-01 X 48417588 48417588 T C TBC1D25 Missense_Mutation p.S187P 0.45 deleterious(0.01) probably_damaging(0.915) TCGA-D5-6928-01 X 48689599 48689599 G A PCSK1N 3'UTR 0.25 TCGA-D5-6928-01 X 48896753 48896753 G A TFE3 Missense_Mutation p.A138V 0.26 tolerated(0.06) unknown(0) TCGA-D5-6928-01 X 49081322 49081322 C - CACNA1F Frame_Shift_Del p.G604Afs*3 0.15 TCGA-D5-6928-01 X 49087680 49087680 G T CACNA1F Missense_Mutation p.T122N 0.22 tolerated(0.33) benign(0.02) TCGA-D5-6928-01 X 51150612 51150612 C T CXorf67 Silent p.H248H 0.28 TCGA-D5-6928-01 X 51488823 51488823 C T GSPT2 3'UTR 0.32 TCGA-D5-6928-01 X 54225053 54225053 A G WNK3 Missense_Mutation p.W1703R 0.35 tolerated(0.07) probably_damaging(0.999) TCGA-D5-6928-01 X 54838088 54838088 T C MAGED2 Splice_Site p.X330_splice 0.32 TCGA-D5-6928-01 X 55044078 55044078 C T ALAS2 Missense_Mutation p.A282T 0.28 deleterious(0.02) probably_damaging(0.966) TCGA-D5-6928-01 X 55514326 55514326 C A USP51 Missense_Mutation p.K349N 0.34 tolerated(0.87) probably_damaging(0.95) TCGA-D5-6928-01 X 56259774 56259774 G A KLF8 Missense_Mutation p.D3N 0.27 tolerated_low_confidence(0.18) benign(0.001) TCGA-D5-6928-01 X 57623822 57623823 - T ZXDB 3'UTR 0.24 TCGA-D5-6928-01 X 64754631 64754631 C T LAS1L 5'UTR 0.38 TCGA-D5-6928-01 X 64955134 64955134 C T MSN Silent p.F267F 0.27 TCGA-D5-6928-01 X 67942348 67942348 C A STARD8 Missense_Mutation p.R887S 0.36 tolerated(0.48) benign(0.047) TCGA-D5-6928-01 X 70351420 70351420 G A MED12 Missense_Mutation p.M1356I 0.33 benign(0.024) TCGA-D5-6928-01 X 70627446 70627446 G A TAF1 Missense_Mutation p.R1397Q 0.40 deleterious(0) benign(0.304) TCGA-D5-6928-01 X 71360408 71360408 G A NHSL2 Missense_Mutation p.V1004I 0.42 tolerated(0.06) possibly_damaging(0.88) TCGA-D5-6928-01 X 72434277 72434277 C T NAP1L2 Missense_Mutation p.A18T 0.29 deleterious_low_confidence(0.03) benign(0.001) TCGA-D5-6928-01 X 79699283 79699284 - A FAM46D 3'UTR 0.18 TCGA-D5-6928-01 X 84526620 84526621 - A ZNF711 Frame_Shift_Ins p.H694Tfs*14 0.23 TCGA-D5-6928-01 X 88008656 88008656 C T CPXCR1 Nonsense_Mutation p.R81* 0.29 TCGA-D5-6928-01 X 92965185 92965185 A G FAM133A 3'UTR 0.22 TCGA-D5-6928-01 Y 3447855 3447855 A - TGIF2LY 3'UTR 0.23 TCGA-D5-6929-01 10 108434896 108434896 C T SORCS1 Silent p.G617G 0.13 TCGA-D5-6929-01 10 124402726 124402726 C T DMBT1 Missense_Mutation p.R2352C 0.25 deleterious(0) probably_damaging(0.996) TCGA-D5-6929-01 10 42907220 42907220 C T CCNYL2 RNA 0.18 TCGA-D5-6929-01 10 5926011 5926011 T C ANKRD16 Missense_Mutation p.N203S 0.11 tolerated(1) benign(0.004) TCGA-D5-6929-01 10 69281702 69281702 C A CTNNA3 Missense_Mutation p.E159D 0.19 tolerated(0.86) benign(0.011) TCGA-D5-6929-01 10 88232060 88232060 A G WAPAL Silent p.V645V 0.29 TCGA-D5-6929-01 10 98173003 98173003 C T TLL2 Missense_Mutation p.V332M 0.20 deleterious(0.03) possibly_damaging(0.767) TCGA-D5-6929-01 11 108059854 108059854 G A NPAT Nonsense_Mutation p.Q179* 0.39 TCGA-D5-6929-01 11 109295985 109295986 - A C11orf87 3'UTR 0.14 TCGA-D5-6929-01 11 117059495 117059495 G A SIDT2 Missense_Mutation p.D411N 0.15 deleterious(0.01) probably_damaging(1) TCGA-D5-6929-01 11 118498952 118498952 G A PHLDB1 Silent p.P471P 0.21 TCGA-D5-6929-01 11 121424656 121424656 G A SORL1 Silent p.E759E 0.15 TCGA-D5-6929-01 11 133795642 133795642 G C IGSF9B Missense_Mutation p.L676V 0.16 deleterious(0) probably_damaging(0.998) TCGA-D5-6929-01 11 13399894 13399894 G T ARNTL Missense_Mutation p.K474N 0.19 tolerated(0.07) benign(0.218) TCGA-D5-6929-01 11 43418207 43418207 T C TTC17 Intron 0.11 TCGA-D5-6929-01 11 43702330 43702330 T G HSD17B12 5'UTR 0.12 TCGA-D5-6929-01 11 47354171 47354171 C T MYBPC3 Silent p.S1191S 0.13 TCGA-D5-6929-01 11 4929538 4929538 A C OR51A7 Nonstop_Mutation p.*313Yext*? 0.26 TCGA-D5-6929-01 11 56185624 56185624 C A OR5R1 Missense_Mutation p.G29W 0.17 tolerated(0.19) benign(0.412) TCGA-D5-6929-01 11 67219845 67219845 G T GPR152 Silent p.S117S 0.17 TCGA-D5-6929-01 12 12037476 12037476 G A ETV6 Silent p.R369R 0.14 TCGA-D5-6929-01 12 123200224 123200224 C A HCAR3 Missense_Mutation p.S354I 0.33 deleterious_low_confidence(0) benign(0.277) TCGA-D5-6929-01 12 18434988 18434988 C T PIK3C2G 5'UTR 0.12 TCGA-D5-6929-01 12 49217249 49217249 G T CACNB3 Missense_Mutation p.K56N 0.12 deleterious(0) possibly_damaging(0.9) TCGA-D5-6929-01 12 49217566 49217566 G T CACNB3 Missense_Mutation p.D91Y 0.24 deleterious(0) probably_damaging(0.935) TCGA-D5-6929-01 12 5024112 5024112 G A KCNA1 3'UTR 0.07 TCGA-D5-6929-01 12 52404889 52404889 G T GRASP Nonsense_Mutation p.E140* 0.14 TCGA-D5-6929-01 12 52407471 52407471 G T GRASP Missense_Mutation p.G152V 0.18 deleterious(0) probably_damaging(0.999) TCGA-D5-6929-01 12 52680063 52680063 G A KRT81 Silent p.C498C 0.30 TCGA-D5-6929-01 12 52914074 52914074 G A KRT5 Missense_Mutation p.R3C 0.32 deleterious(0.05) unknown(0) TCGA-D5-6929-01 12 56600440 56600440 T C RNF41 Missense_Mutation p.N249D 0.27 deleterious(0.04) possibly_damaging(0.716) TCGA-D5-6929-01 12 6932987 6932990 TGTT - GPR162 5'UTR 0.16 TCGA-D5-6929-01 12 78574822 78574822 T G NAV3 Missense_Mutation p.S1875A 0.11 tolerated(0.52) benign(0.009) TCGA-D5-6929-01 12 78579379 78579379 A G NAV3 Splice_Site p.X1876_splice 0.21 TCGA-D5-6929-01 13 32899311 32899311 C G BRCA2 Missense_Mutation p.L139V 0.19 deleterious(0.01) possibly_damaging(0.716) TCGA-D5-6929-01 13 41767845 41767845 G A KBTBD7 Silent p.F183F 0.05 TCGA-D5-6929-01 13 42876666 42876666 G A AKAP11 Missense_Mutation p.D1262N 0.13 deleterious(0.01) possibly_damaging(0.786) TCGA-D5-6929-01 13 58207353 58207353 G A PCDH17 Missense_Mutation p.A225T 0.07 deleterious(0) possibly_damaging(0.466) TCGA-D5-6929-01 13 60435619 60435619 C T DIAPH3 Missense_Mutation p.V887I 0.16 tolerated(0.12) probably_damaging(0.997) TCGA-D5-6929-01 13 98658477 98658477 T A IPO5 Missense_Mutation p.Y549N 0.15 deleterious(0) probably_damaging(0.991) TCGA-D5-6929-01 13 99364165 99364165 C T SLC15A1 Silent p.T281T 0.19 TCGA-D5-6929-01 14 105617233 105617233 C T JAG2 Missense_Mutation p.R466H 0.18 tolerated(1) benign(0.01) TCGA-D5-6929-01 14 106208330 106208330 G A IGHG1 Silent p.T190T 0.23 TCGA-D5-6929-01 14 20837644 20837644 C G TEP1 Missense_Mutation p.W2505C 0.24 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-D5-6929-01 14 33291128 33291128 G A AKAP6 Missense_Mutation p.G1370E 0.22 deleterious(0.01) probably_damaging(1) TCGA-D5-6929-01 14 59967913 59967913 C T JKAMP Silent p.Y215Y 0.27 TCGA-D5-6929-01 14 69345725 69345725 T C ACTN1 Missense_Mutation p.D781G 0.26 deleterious(0.01) benign(0) TCGA-D5-6929-01 14 99640782 99640782 C T BCL11B Silent p.T797T 0.14 TCGA-D5-6929-01 15 29346728 29346728 G A APBA2 Missense_Mutation p.R214H 0.52 tolerated_low_confidence(0.08) benign(0.002) TCGA-D5-6929-01 15 40846104 40846104 C T C15orf57 3'Flank 0.38 TCGA-D5-6929-01 15 49170989 49170989 C T EID1 3'UTR 0.22 TCGA-D5-6929-01 15 50264984 50264984 C T ATP8B4 Silent p.V346V 0.24 TCGA-D5-6929-01 15 78526836 78526836 C T ACSBG1 Missense_Mutation p.R3H 0.29 deleterious_low_confidence(0.01) benign(0.002) TCGA-D5-6929-01 15 84561512 84561512 G C ADAMTSL3 Missense_Mutation p.E447Q 0.26 deleterious(0) probably_damaging(0.995) TCGA-D5-6929-01 16 20557788 20557788 A G ACSM2B Silent p.T369T 0.05 TCGA-D5-6929-01 16 30364156 30364156 C T CD2BP2 3'UTR 0.30 TCGA-D5-6929-01 16 3367302 3367302 G A ZNF75A Silent p.Q108Q 0.11 TCGA-D5-6929-01 16 57059693 57059693 C G NLRC5 Missense_Mutation p.L280V 0.17 tolerated(0.09) benign(0.219) TCGA-D5-6929-01 16 67286687 67286687 C A SLC9A5 Missense_Mutation p.L144I 0.15 tolerated(0.58) benign(0.146) TCGA-D5-6929-01 16 68264171 68264171 A C ESRP2 Silent p.P704P 0.40 TCGA-D5-6929-01 16 70162989 70162989 G A PDPR Missense_Mutation p.V191M 0.14 deleterious(0) probably_damaging(0.953) TCGA-D5-6929-01 16 76513372 76513372 T C CNTNAP4 Missense_Mutation p.Y534H 0.06 deleterious(0.01) probably_damaging(0.968) TCGA-D5-6929-01 16 89789131 89789131 C T ZNF276 Missense_Mutation p.P133L 0.20 deleterious(0) benign(0.081) TCGA-D5-6929-01 17 33457379 33457379 C T FNDC8 Missense_Mutation p.R301W 0.14 deleterious_low_confidence(0) benign(0.288) TCGA-D5-6929-01 17 34183788 34183788 G A C17orf66 Nonsense_Mutation p.Q392* 0.11 TCGA-D5-6929-01 17 35603816 35603816 C A ACACA Missense_Mutation p.A796S 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-D5-6929-01 17 39183218 39183218 T A KRTAP1-5 Missense_Mutation p.S64C 0.23 deleterious(0.01) unknown(0) TCGA-D5-6929-01 17 39780514 39780514 C A KRT17 Missense_Mutation p.G83V 0.15 deleterious(0) possibly_damaging(0.703) TCGA-D5-6929-01 17 42338169 42338169 C T SLC4A1 Silent p.L61L 0.14 TCGA-D5-6929-01 17 42340073 42340073 C A SLC4A1 Nonsense_Mutation p.E13* 0.11 TCGA-D5-6929-01 17 45360886 45360886 C A ITGB3 Missense_Mutation p.P111H 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6929-01 17 57808852 57808852 G A VMP1 Missense_Mutation p.M15I 0.28 tolerated(0.29) benign(0.015) TCGA-D5-6929-01 17 59112073 59112073 G A BCAS3 Missense_Mutation p.G577R 0.20 tolerated(0.47) probably_damaging(0.99) TCGA-D5-6929-01 17 61723434 61723434 G A MAP3K3 Missense_Mutation p.R87Q 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6929-01 17 70117600 70117601 - CC SOX9 Frame_Shift_Ins p.T25Pfs*37 0.21 TCGA-D5-6929-01 17 73038647 73038647 G A ATP5H Silent p.S33S 0.24 TCGA-D5-6929-01 17 7357816 7357817 - T CHRNB1 Frame_Shift_Ins p.Q341Lfs*49 0.18 TCGA-D5-6929-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.55 deleterious(0.01) probably_damaging(0.914) TCGA-D5-6929-01 17 76411040 76411040 C A PGS1 Missense_Mutation p.H495N 0.12 tolerated(0.36) benign(0.05) TCGA-D5-6929-01 18 30275441 30275441 G T KLHL14 Missense_Mutation p.Q382K 0.27 tolerated(0.21) benign(0.38) TCGA-D5-6929-01 18 32920427 32920427 G A ZNF24 Missense_Mutation p.S63L 0.26 deleterious(0) possibly_damaging(0.637) TCGA-D5-6929-01 18 32920521 32920521 G C ZNF24 Missense_Mutation p.P32A 0.24 tolerated(0.8) possibly_damaging(0.539) TCGA-D5-6929-01 18 32920576 32920576 G A ZNF24 Silent p.I13I 0.25 TCGA-D5-6929-01 18 56035035 56035035 G A NEDD4L Silent p.L707L 0.34 TCGA-D5-6929-01 19 11527598 11527598 C T RGL3 Missense_Mutation p.A95T 0.16 tolerated(0.17) benign(0.403) TCGA-D5-6929-01 19 18377103 18377103 C T KIAA1683 Missense_Mutation p.R416Q 0.18 tolerated(0.29) benign(0.094) TCGA-D5-6929-01 19 35828899 35828899 G A CD22 Silent p.S320S 0.16 TCGA-D5-6929-01 19 37853915 37853915 A G HKR1 Silent p.T406T 0.08 TCGA-D5-6929-01 19 39086334 39086334 C A MAP4K1 Missense_Mutation p.V739F 0.14 tolerated(0.25) possibly_damaging(0.602) TCGA-D5-6929-01 19 4550161 4550161 C T SEMA6B Silent p.A415A 0.20 TCGA-D5-6929-01 19 58099969 58099969 T C ZIK1 Silent p.D45D 0.41 TCGA-D5-6929-01 19 58099970 58099970 G T ZIK1 Nonsense_Mutation p.E46* 0.41 TCGA-D5-6929-01 1 117527521 117527521 C T PTGFRN Missense_Mutation p.T796I 0.46 deleterious(0.03) benign(0.064) TCGA-D5-6929-01 1 152056893 152056893 A G TCHHL1 3'UTR 0.36 TCGA-D5-6929-01 1 153330884 153330884 G A S100A9 Missense_Mutation p.R42Q 0.29 tolerated(0.62) benign(0.001) TCGA-D5-6929-01 1 156821535 156821535 C A INSRR Missense_Mutation p.K329N 0.20 tolerated(0.22) possibly_damaging(0.614) TCGA-D5-6929-01 1 176564568 176564568 G A PAPPA2 Missense_Mutation p.G610S 0.20 deleterious(0) probably_damaging(0.996) TCGA-D5-6929-01 1 210414969 210414969 G A SERTAD4 Missense_Mutation p.D120N 0.29 deleterious(0) probably_damaging(0.996) TCGA-D5-6929-01 1 220206966 220206966 A G EPRS Missense_Mutation p.L89S 0.24 deleterious(0) probably_damaging(0.969) TCGA-D5-6929-01 1 225511986 225511986 G C DNAH14 Silent p.L2440L 0.23 TCGA-D5-6929-01 1 76260245 76260247 AGA - RABGGTB In_Frame_Del p.E304del 0.18 TCGA-D5-6929-01 1 93594948 93594948 C G MTF2 Missense_Mutation p.T368R 0.23 tolerated(0.53) benign(0.045) TCGA-D5-6929-01 20 20028411 20028411 C T CRNKL1 Missense_Mutation p.R368Q 0.23 deleterious(0.03) benign(0.426) TCGA-D5-6929-01 20 45354005 45354005 C T SLC2A10 Silent p.F110F 0.26 TCGA-D5-6929-01 20 55213100 55213100 G A TFAP2C 3'UTR 0.19 TCGA-D5-6929-01 22 37485709 37485714 TGAGCA - TMPRSS6 In_Frame_Del p.M256_L257del 0.11 TCGA-D5-6929-01 2 107446574 107446574 C A ST6GAL2 Missense_Mutation p.Q422H 0.35 probably_damaging(1) TCGA-D5-6929-01 2 136562458 136562458 C T LCT Missense_Mutation p.R1448H 0.20 deleterious(0.01) probably_damaging(1) TCGA-D5-6929-01 2 179500868 179500868 C A TTN Silent p.V13810V 0.43 TCGA-D5-6929-01 2 201768490 201768491 - AG NIF3L1 3'UTR 0.16 TCGA-D5-6929-01 2 223065704 223065704 T G PAX3 3'UTR 0.40 TCGA-D5-6929-01 2 225717091 225717091 C T DOCK10 Intron 0.22 TCGA-D5-6929-01 2 232952291 232952291 C T DIS3L2 Missense_Mutation p.S154F 0.08 tolerated(0.07) benign(0.396) TCGA-D5-6929-01 2 238270390 238270390 C T COL6A3 Missense_Mutation p.G2050R 0.15 probably_damaging(0.997) TCGA-D5-6929-01 2 25042775 25042775 T G CENPO 3'UTR 0.08 TCGA-D5-6929-01 2 32865418 32865418 C G TTC27 Missense_Mutation p.L160V 0.12 deleterious(0) possibly_damaging(0.67) TCGA-D5-6929-01 2 44204379 44204379 A C LRPPRC Missense_Mutation p.L169R 0.34 deleterious(0) probably_damaging(0.996) TCGA-D5-6929-01 2 5838192 5838192 T G SOX11 3'UTR 0.07 TCGA-D5-6929-01 3 146303847 146303847 C A PLSCR5 3'UTR 0.17 TCGA-D5-6929-01 3 40547868 40547871 GTGA - ZNF620 Splice_Site p.X8_splice 0.23 TCGA-D5-6929-01 3 52780817 52780817 C T NEK4 Missense_Mutation p.R537Q 0.21 tolerated(0.06) possibly_damaging(0.807) TCGA-D5-6929-01 3 97753833 97753833 T C GABRR3 Intron 0.08 TCGA-D5-6929-01 3 97806188 97806188 C G OR5AC2 Missense_Mutation p.H58D 0.20 deleterious(0) possibly_damaging(0.846) TCGA-D5-6929-01 4 10445677 10445677 C T ZNF518B Missense_Mutation p.R759K 0.41 tolerated(0.07) benign(0.079) TCGA-D5-6929-01 4 7012416 7012416 T - TBC1D14 Frame_Shift_Del p.L519* 0.16 TCGA-D5-6929-01 4 83349186 83349186 A - HNRNPDL Frame_Shift_Del p.F253Lfs*35 0.17 TCGA-D5-6929-01 5 112173516 112173516 T - APC Frame_Shift_Del p.M743Cfs*18 0.20 TCGA-D5-6929-01 5 140176748 140176748 G A PCDHA2 Silent p.A733A 0.11 TCGA-D5-6929-01 5 140203783 140203783 T - PCDHA5 Intron 0.19 TCGA-D5-6929-01 5 140591263 140591263 A T PCDHB12 3'UTR 0.21 TCGA-D5-6929-01 5 140755852 140755852 C T PCDHGA6 Silent p.S734S 0.24 TCGA-D5-6929-01 5 148727865 148727865 C A GRPEL2 Silent p.T36T 0.10 TCGA-D5-6929-01 5 150714980 150714980 G A SLC36A2 Silent p.I218I 0.28 TCGA-D5-6929-01 5 154395839 154395839 G A KIF4B Missense_Mutation p.G807D 0.14 tolerated(0.06) benign(0.004) TCGA-D5-6929-01 5 16453221 16453221 G A ZNF622 Nonsense_Mutation p.R403* 0.39 TCGA-D5-6929-01 5 169412866 169412866 A T DOCK2 Missense_Mutation p.D978V 0.26 deleterious(0) probably_damaging(0.951) TCGA-D5-6929-01 5 56542291 56542291 C T GPBP1 Missense_Mutation p.P222S 0.23 deleterious(0.04) possibly_damaging(0.536) TCGA-D5-6929-01 6 152129035 152129035 G A ESR1 5'UTR 0.20 TCGA-D5-6929-01 6 152668336 152668336 C A SYNE1 Missense_Mutation p.R3979L 0.20 benign(0.358) TCGA-D5-6929-01 6 27368244 27368244 C A ZNF391 Missense_Mutation p.A32E 0.22 tolerated(0.51) benign(0.023) TCGA-D5-6929-01 6 29012790 29012790 G T OR2W1 Missense_Mutation p.L55I 0.06 deleterious(0) probably_damaging(0.996) TCGA-D5-6929-01 6 41126764 41126764 T C TREM2 Missense_Mutation p.I175V 0.35 tolerated(0.59) benign(0.004) TCGA-D5-6929-01 6 46111099 46111099 C T ENPP4 Missense_Mutation p.H362Y 0.14 tolerated(0.74) benign(0) TCGA-D5-6929-01 6 47846981 47846981 G A PTCHD4 Silent p.S533S 0.35 TCGA-D5-6929-01 6 70916872 70916872 C T COL19A1 Missense_Mutation p.P1108L 0.31 deleterious(0) probably_damaging(0.948) TCGA-D5-6929-01 6 84235200 84235200 G T PRSS35 3'UTR 0.20 TCGA-D5-6929-01 7 1097552 1097552 C T GPR146 Missense_Mutation p.P134L 0.39 deleterious(0) probably_damaging(1) TCGA-D5-6929-01 7 150174635 150174635 C T GIMAP8 Missense_Mutation p.R589C 0.25 tolerated(0.17) benign(0.381) TCGA-D5-6929-01 7 151932922 151932922 C T KMT2C Missense_Mutation p.G917R 0.23 probably_damaging(0.996) TCGA-D5-6929-01 7 1733460 1733460 C T AC074389.6 Silent p.P24P 0.26 TCGA-D5-6929-01 7 23385600 23385600 T G IGF2BP3 Missense_Mutation p.K300N 0.16 deleterious(0) possibly_damaging(0.85) TCGA-D5-6929-01 7 47319776 47319776 A T TNS3 Missense_Mutation p.D1393E 0.14 tolerated(0.39) benign(0.075) TCGA-D5-6929-01 8 101153750 101153750 T C FBXO43 Silent p.L244L 0.18 TCGA-D5-6929-01 8 110412573 110412573 G T PKHD1L1 Missense_Mutation p.K427N 0.12 deleterious(0) probably_damaging(0.993) TCGA-D5-6929-01 8 114031319 114031319 C T CSMD3 Missense_Mutation p.R336H 0.35 deleterious(0.02) possibly_damaging(0.836) TCGA-D5-6929-01 8 120801876 120801876 T A TAF2 Silent p.S508S 0.11 TCGA-D5-6929-01 8 142445273 142445273 G C PTP4A3 3'Flank 0.09 TCGA-D5-6929-01 8 143694522 143694522 G A ARC Missense_Mutation p.P371S 0.18 deleterious_low_confidence(0.02) benign(0.079) TCGA-D5-6929-01 8 145095145 145095145 C A SPATC1 Missense_Mutation p.L183M 0.11 tolerated(0.1) benign(0.177) TCGA-D5-6929-01 8 23306283 23306283 G A ENTPD4 Nonsense_Mutation p.R60* 0.27 TCGA-D5-6929-01 8 39845415 39845415 C T IDO2 Missense_Mutation p.P172S 0.29 deleterious(0) probably_damaging(0.999) TCGA-D5-6929-01 8 91029487 91029487 A G DECR1 Missense_Mutation p.T69A 0.18 deleterious(0) probably_damaging(0.931) TCGA-D5-6929-01 8 99442696 99442696 G T KCNS2 3'UTR 0.08 TCGA-D5-6929-01 9 135906413 135906413 G A GTF3C5 Silent p.A5A 0.23 TCGA-D5-6929-01 9 138387220 138387220 A G C9orf116 3'UTR 0.11 TCGA-D5-6929-01 9 6554768 6554768 C T GLDC Missense_Mutation p.R739H 0.30 deleterious(0) probably_damaging(0.998) TCGA-D5-6929-01 9 84564769 84564769 C A RP11-383M4.6 Intron 0.18 TCGA-D5-6929-01 X 102632841 102632841 G A NGFRAP1 3'UTR 0.24 TCGA-D5-6929-01 X 105912497 105912497 A G CXorf57 Missense_Mutation p.S792G 0.26 tolerated(0.57) benign(0.051) TCGA-D5-6929-01 X 119249695 119249695 C A RHOXF1 Missense_Mutation p.Q26H 0.21 tolerated(0.09) benign(0) TCGA-D5-6929-01 X 135754262 135754262 G T ARHGEF6 Silent p.S684S 0.08 TCGA-D5-6929-01 X 149098192 149098192 C T CXorf40B 3'Flank 0.19 TCGA-D5-6929-01 X 5947403 5947403 G T NLGN4X Silent p.T181T 0.20 TCGA-D5-6929-01 X 70837364 70837365 TT - CXCR3 Frame_Shift_Del p.K33Rfs*21 0.17 TCGA-D5-6930-01 10 101596039 101596039 C T ABCC2 Silent p.T1202T 0.24 TCGA-D5-6930-01 10 102685848 102685848 C A FAM178A Intron 0.11 TCGA-D5-6930-01 10 102783751 102783751 C T PDZD7 Missense_Mutation p.V101M 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-D5-6930-01 10 102789972 102789972 G A PDZD7 Missense_Mutation p.A2V 0.19 deleterious_low_confidence(0) benign(0.18) TCGA-D5-6930-01 10 103348197 103348197 C A DPCD Intron 0.33 TCGA-D5-6930-01 10 103901462 103901462 C T PPRC1 Missense_Mutation p.P1066L 0.24 tolerated_low_confidence(1) benign(0) TCGA-D5-6930-01 10 104678740 104678740 G A CNNM2 Missense_Mutation p.R168H 0.09 tolerated(0.17) benign(0.416) TCGA-D5-6930-01 10 106118324 106118324 G A CCDC147 Missense_Mutation p.A79T 0.14 tolerated(0.15) benign(0.133) TCGA-D5-6930-01 10 11505712 11505712 G A USP6NL Silent p.S422S 0.15 TCGA-D5-6930-01 10 116060449 116060449 C T AFAP1L2 Missense_Mutation p.V515M 0.24 tolerated(0.23) benign(0.04) TCGA-D5-6930-01 10 1170271 1170271 G A WDR37 Missense_Mutation p.R406H 0.25 deleterious(0) probably_damaging(0.964) TCGA-D5-6930-01 10 118030622 118030622 G A GFRA1 Missense_Mutation p.L16F 0.17 deleterious(0.01) unknown(0) TCGA-D5-6930-01 10 118031516 118031516 G A GFRA1 Missense_Mutation p.A9V 0.12 tolerated(1) unknown(0) TCGA-D5-6930-01 10 118628160 118628160 G A ENO4 Splice_Site p.X56_splice 0.22 TCGA-D5-6930-01 10 121201577 121201577 G A GRK5 Missense_Mutation p.R345Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6930-01 10 121203140 121203140 G A GRK5 Missense_Mutation p.G381D 0.35 deleterious(0) probably_damaging(0.982) TCGA-D5-6930-01 10 123970380 123970380 C - TACC2 Frame_Shift_Del p.P2149Qfs*2 0.30 TCGA-D5-6930-01 10 124917380 124917381 TC - BUB3 Frame_Shift_Del p.Q136Afs*2 0.18 TCGA-D5-6930-01 10 124924452 124924452 T - BUB3 3'UTR 0.15 TCGA-D5-6930-01 10 126172894 126172894 C T LHPP Silent p.D104D 0.10 TCGA-D5-6930-01 10 127677800 127677800 T C FANK1 Intron 0.23 TCGA-D5-6930-01 10 134663918 134663918 G A TTC40 Missense_Mutation p.R1928W 0.36 tolerated(0.05) probably_damaging(0.997) TCGA-D5-6930-01 10 135085035 135085035 G - ADAM8 Frame_Shift_Del p.E428Rfs*32 0.25 TCGA-D5-6930-01 10 135216273 135216273 T G MTG1 Missense_Mutation p.F250V 0.23 deleterious(0) possibly_damaging(0.794) TCGA-D5-6930-01 10 21808418 21808418 A G SKIDA1 5'UTR 0.28 TCGA-D5-6930-01 10 24722013 24722013 G A KIAA1217 Missense_Mutation p.V215I 0.16 deleterious(0) probably_damaging(0.996) TCGA-D5-6930-01 10 24873534 24873534 T G ARHGAP21 Missense_Mutation p.N1895T 0.26 tolerated(0.4) benign(0) TCGA-D5-6930-01 10 25464510 25464510 C T GPR158 Missense_Mutation p.A54V 0.29 tolerated(0.18) probably_damaging(0.985) TCGA-D5-6930-01 10 27687469 27687470 - T PTCHD3 Frame_Shift_Ins p.N686Kfs*6 0.14 TCGA-D5-6930-01 10 29839781 29839781 T C SVIL Missense_Mutation p.D191G 0.14 tolerated(0.07) benign(0.009) TCGA-D5-6930-01 10 30915797 30915797 G A LYZL2 Silent p.G62G 0.15 TCGA-D5-6930-01 10 31810746 31810746 C T ZEB1 Missense_Mutation p.A829V 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-D5-6930-01 10 42905422 42905422 T G CCNYL2 RNA 0.18 TCGA-D5-6930-01 10 461747 461747 C T DIP2C Missense_Mutation p.R274Q 0.20 tolerated(0.3) benign(0.029) TCGA-D5-6930-01 10 48390167 48390167 G A RBP3 Silent p.G237G 0.08 TCGA-D5-6930-01 10 49365310 49365310 G T FRMPD2 3'UTR 0.14 TCGA-D5-6930-01 10 49628296 49628296 G A MAPK8 Silent p.T183T 0.19 TCGA-D5-6930-01 10 50025334 50025334 G A WDFY4 Silent p.P1795P 0.21 TCGA-D5-6930-01 10 51465434 51465434 G A AGAP7 Missense_Mutation p.S341F 0.17 tolerated(0.18) benign(0.014) TCGA-D5-6930-01 10 5435983 5435983 C T TUBAL3 Missense_Mutation p.A280T 0.14 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D5-6930-01 10 55569276 55569276 C T PCDH15 Missense_Mutation p.V446I 0.12 tolerated_low_confidence(0.08) unknown(0) TCGA-D5-6930-01 10 60577391 60577391 A T BICC1 Missense_Mutation p.N868I 0.14 deleterious(0.01) possibly_damaging(0.534) TCGA-D5-6930-01 10 61718602 61718602 A T C10orf40 5'UTR 0.18 TCGA-D5-6930-01 10 6553040 6553040 C T PRKCQ Missense_Mutation p.V79M 0.28 tolerated(0.12) benign(0.004) TCGA-D5-6930-01 10 68535271 68535271 T - CTNNA3 Frame_Shift_Del p.E354Kfs*6 0.21 TCGA-D5-6930-01 10 69959256 69959256 C T MYPN Silent p.R1139R 0.28 TCGA-D5-6930-01 10 69961673 69961673 G A MYPN Missense_Mutation p.R1194H 0.14 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 10 70728775 70728775 C T DDX21 Silent p.C378C 0.23 TCGA-D5-6930-01 10 72358610 72358610 C A PRF1 Silent p.T289T 0.22 TCGA-D5-6930-01 10 73767691 73767691 G A CHST3 Missense_Mutation p.R301H 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 10 75000719 75000719 G T FAM149B1 Missense_Mutation p.G564V 0.17 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 10 75532994 75532994 C A FUT11 Missense_Mutation p.A252E 0.44 tolerated(0.97) benign(0.007) TCGA-D5-6930-01 10 76990727 76990727 G A VDAC2 Missense_Mutation p.A304T 0.16 deleterious(0.02) benign(0.221) TCGA-D5-6930-01 10 7791261 7791261 C T ITIH2 Silent p.F935F 0.20 TCGA-D5-6930-01 10 81274916 81274916 G A EIF5AL1 3'UTR 0.19 TCGA-D5-6930-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.19 TCGA-D5-6930-01 10 91203598 91203598 A - SLC16A12 Frame_Shift_Del p.F73Lfs*22 0.25 TCGA-D5-6930-01 10 94835034 94835034 G A CYP26A1 Silent p.S278S 0.21 TCGA-D5-6930-01 10 95107444 95107444 G A MYOF Silent p.T1393T 0.16 TCGA-D5-6930-01 10 96084232 96084232 C T PLCE1 Missense_Mutation p.R2210W 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 10 97447400 97447400 G A TCTN3 Silent p.G192G 0.28 TCGA-D5-6930-01 10 98146816 98146816 C T TLL2 Nonsense_Mutation p.W582* 0.11 TCGA-D5-6930-01 10 98287246 98287246 T C TM9SF3 Missense_Mutation p.T517A 0.11 tolerated(0.11) probably_damaging(0.958) TCGA-D5-6930-01 10 98763855 98763855 G T SLIT1 Missense_Mutation p.L1279I 0.08 deleterious(0.05) benign(0.198) TCGA-D5-6930-01 10 99200950 99200950 T C EXOSC1 Missense_Mutation p.N97D 0.10 tolerated(0.36) benign(0.001) TCGA-D5-6930-01 10 99531252 99531252 C T SFRP5 Silent p.A113A 0.10 TCGA-D5-6930-01 11 100999691 100999691 C T PGR Silent p.P37P 0.42 TCGA-D5-6930-01 11 101815012 101815012 C T KIAA1377 Nonsense_Mutation p.R89* 0.26 TCGA-D5-6930-01 11 102573777 102573777 C T MMP27 Nonsense_Mutation p.W138* 0.23 TCGA-D5-6930-01 11 1026940 1026940 C T MUC6 Splice_Site p.X798_splice 0.21 TCGA-D5-6930-01 11 103907979 103907979 C T DDI1 Silent p.P143P 0.32 TCGA-D5-6930-01 11 104897048 104897048 C T CASP1 Silent p.A384A 0.23 TCGA-D5-6930-01 11 104916039 104916039 A - CARD16 5'UTR 0.15 TCGA-D5-6930-01 11 107880080 107880080 G A CUL5 Silent p.A2A 0.11 TCGA-D5-6930-01 11 113103495 113103495 G A NCAM1 Missense_Mutation p.R543H 0.11 deleterious(0.03) benign(0.377) TCGA-D5-6930-01 11 1157897 1157897 G - MUC5AC Frame_Shift_Del p.L324Cfs*137 0.25 TCGA-D5-6930-01 11 117375712 117375712 G A DSCAML1 Silent p.Y763Y 0.25 TCGA-D5-6930-01 11 118765660 118765660 G A BCL9L 3'UTR 0.24 TCGA-D5-6930-01 11 118772083 118772083 G - BCL9L Frame_Shift_Del p.P790Rfs*6 0.32 TCGA-D5-6930-01 11 118889375 118889376 - G TRAPPC4 5'UTR 0.38 TCGA-D5-6930-01 11 119227949 119227949 C T USP2 Missense_Mutation p.A560T 0.18 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 11 122669715 122669715 G A UBASH3B Missense_Mutation p.V475I 0.26 tolerated(0.53) benign(0.034) TCGA-D5-6930-01 11 123624777 123624777 G A OR6X1 Silent p.G150G 0.20 TCGA-D5-6930-01 11 123777503 123777503 G A OR8D4 Missense_Mutation p.R122H 0.13 deleterious(0) benign(0.01) TCGA-D5-6930-01 11 124751209 124751209 C - ROBO3 3'UTR 0.28 TCGA-D5-6930-01 11 124763783 124763783 G A ROBO4 Missense_Mutation p.R493C 0.16 deleterious(0.04) benign(0.052) TCGA-D5-6930-01 11 124790466 124790466 C - HEPACAM 3'UTR 0.26 TCGA-D5-6930-01 11 128628030 128628030 C T FLI1 Silent p.S13S 0.28 TCGA-D5-6930-01 11 128843344 128843344 A - ARHGAP32 Intron 0.25 TCGA-D5-6930-01 11 130284476 130284476 G T ADAMTS8 Missense_Mutation p.L506I 0.28 tolerated(0.21) benign(0.02) TCGA-D5-6930-01 11 131781321 131781322 - G NTM 5'Flank 0.12 TCGA-D5-6930-01 11 132016268 132016268 G A NTM Missense_Mutation p.R87H 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 11 132177693 132177693 C T NTM Missense_Mutation p.R213W 0.22 deleterious(0) probably_damaging(0.969) TCGA-D5-6930-01 11 18159006 18159006 G A MRGPRX3 Missense_Mutation p.R86H 0.25 tolerated(0.53) benign(0.002) TCGA-D5-6930-01 11 1857729 1857729 G A SYT8 Silent p.E211E 0.27 TCGA-D5-6930-01 11 18955788 18955788 C T MRGPRX1 Missense_Mutation p.A182T 0.15 tolerated(0.22) benign(0.079) TCGA-D5-6930-01 11 1950355 1950355 G A TNNT3 Missense_Mutation p.A30T 0.27 tolerated(0.55) unknown(0) TCGA-D5-6930-01 11 2683158 2683158 G A KCNQ1 Intron 0.10 TCGA-D5-6930-01 11 32125024 32125024 A G RCN1 Missense_Mutation p.K296E 0.22 deleterious(0.04) possibly_damaging(0.542) TCGA-D5-6930-01 11 35641596 35641596 G A FJX1 3'UTR 0.30 TCGA-D5-6930-01 11 4104510 4104510 T C STIM1 Missense_Mutation p.V419A 0.17 deleterious(0.02) benign(0.017) TCGA-D5-6930-01 11 44092823 44092823 C T ACCS Silent p.G102G 0.11 TCGA-D5-6930-01 11 4510883 4510883 G A OR52K1 Silent p.L251L 0.15 TCGA-D5-6930-01 11 45992680 45992680 T - PHF21A Frame_Shift_Del p.N200Tfs*67 0.19 TCGA-D5-6930-01 11 4661450 4661450 C T OR51D1 Missense_Mutation p.R144C 0.09 deleterious(0) possibly_damaging(0.726) TCGA-D5-6930-01 11 47834865 47834865 T C NUP160 Intron 0.15 TCGA-D5-6930-01 11 48346902 48346902 T C OR4C3 Missense_Mutation p.I137T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6930-01 11 51515465 51515465 G A OR4C46 Missense_Mutation p.A62T 0.07 tolerated_low_confidence(0.11) benign(0.157) TCGA-D5-6930-01 11 5410951 5410951 C T OR51M1 Missense_Mutation p.A108V 0.17 deleterious(0.04) possibly_damaging(0.595) TCGA-D5-6930-01 11 55587472 55587472 C T OR5D18 Missense_Mutation p.R123C 0.24 deleterious(0.01) benign(0.207) TCGA-D5-6930-01 11 55606580 55606580 C T OR5D16 Missense_Mutation p.A118V 0.16 tolerated(0.06) benign(0.086) TCGA-D5-6930-01 11 55703498 55703498 C T OR5I1 Missense_Mutation p.A127T 0.09 deleterious(0.01) benign(0.008) TCGA-D5-6930-01 11 57077320 57077320 G A TNKS1BP1 Silent p.S955S 0.26 TCGA-D5-6930-01 11 57077733 57077733 G T TNKS1BP1 Missense_Mutation p.L818I 0.22 tolerated(0.1) benign(0.164) TCGA-D5-6930-01 11 57512597 57512597 C A BTBD18 Missense_Mutation p.S383I 0.25 tolerated(0.06) benign(0.033) TCGA-D5-6930-01 11 57947893 57947893 G T OR9Q1 3'UTR 0.16 TCGA-D5-6930-01 11 59604803 59604803 G A GIF Missense_Mutation p.P239S 0.27 tolerated(0.41) benign(0.009) TCGA-D5-6930-01 11 609639 609639 C T PHRF1 Missense_Mutation p.R1394W 0.12 deleterious(0) probably_damaging(0.942) TCGA-D5-6930-01 11 61133711 61133711 T - TMEM138 Intron 0.15 TCGA-D5-6930-01 11 62300005 62300005 C T AHNAK Missense_Mutation p.M628I 0.16 possibly_damaging(0.774) TCGA-D5-6930-01 11 62911249 62911249 C A SLC22A24 Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 11 63594590 63594590 G A C11orf84 Silent p.P375P 0.15 TCGA-D5-6930-01 11 63742268 63742268 T C AP000721.4 Splice_Site p.X38_splice 0.16 TCGA-D5-6930-01 11 63885942 63885942 T - FLRT1 3'UTR 0.24 TCGA-D5-6930-01 11 64137074 64137074 C T RPS6KA4 Missense_Mutation p.R529C 0.18 deleterious(0.01) possibly_damaging(0.877) TCGA-D5-6930-01 11 64375285 64375286 - G NRXN2 Frame_Shift_Ins p.T1508Hfs*82 0.23 TCGA-D5-6930-01 11 64670776 64670776 C A ATG2A Missense_Mutation p.S1199I 0.28 tolerated(0.09) benign(0.128) TCGA-D5-6930-01 11 64811804 64811804 G A SAC3D1 Missense_Mutation p.A228T 0.24 tolerated(0.4) benign(0.012) TCGA-D5-6930-01 11 64939753 64939753 G A SPDYC Missense_Mutation p.A99T 0.18 deleterious(0.03) probably_damaging(0.964) TCGA-D5-6930-01 11 65306041 65306041 G A SCYL1 3'UTR 0.11 TCGA-D5-6930-01 11 65310607 65310607 C T LTBP3 Silent p.G855G 0.13 TCGA-D5-6930-01 11 65367022 65367022 G A MAP3K11 Silent p.P683P 0.11 TCGA-D5-6930-01 11 65429449 65429449 C T RELA Missense_Mutation p.E49K 0.26 deleterious(0) probably_damaging(0.953) TCGA-D5-6930-01 11 65651922 65651922 G A FIBP Silent p.S322S 0.21 TCGA-D5-6930-01 11 6592412 6592412 G A DNHD1 Missense_Mutation p.R4557H 0.30 benign(0.352) TCGA-D5-6930-01 11 66051167 66051167 G - CNIH2 3'UTR 0.33 TCGA-D5-6930-01 11 66105125 66105125 C A BRMS1 3'UTR 0.40 TCGA-D5-6930-01 11 66360163 66360164 - T CCDC87 Frame_Shift_Ins p.N108Kfs*40 0.26 TCGA-D5-6930-01 11 6638239 6638239 A G TPP1 Silent p.S218S 0.25 TCGA-D5-6930-01 11 66605883 66605883 G A C11orf80 Missense_Mutation p.A572T 0.12 tolerated(0.34) benign(0.027) TCGA-D5-6930-01 11 66620246 66620246 C T PC Silent p.T525T 0.26 TCGA-D5-6930-01 11 66802240 66802240 G A SYT12 Silent p.P53P 0.26 TCGA-D5-6930-01 11 67290028 67290028 C T CABP2 Missense_Mutation p.A68T 0.12 tolerated(0.42) benign(0.004) TCGA-D5-6930-01 11 67379443 67379443 C T NDUFV1 Missense_Mutation p.R386C 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D5-6930-01 11 68566686 68566686 G A CPT1A Silent p.Y231Y 0.24 TCGA-D5-6930-01 11 68822192 68822192 C T TPCN2 Missense_Mutation p.R60C 0.25 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 11 70253451 70253451 C T CTTN Silent p.D16D 0.40 TCGA-D5-6930-01 11 70333595 70333595 C T SHANK2 Missense_Mutation p.A936T 0.10 tolerated(0.41) benign(0.002) TCGA-D5-6930-01 11 71726161 71726161 C T NUMA1 Silent p.Q796Q 0.15 TCGA-D5-6930-01 11 72406845 72406845 G A ARAP1 Missense_Mutation p.T1113M 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-D5-6930-01 11 72423491 72423491 G A ARAP1 Silent p.G290G 0.26 TCGA-D5-6930-01 11 73102203 73102203 G - RELT Frame_Shift_Del p.V103Ffs*128 0.17 TCGA-D5-6930-01 11 74009339 74009339 C T P4HA3 Missense_Mutation p.R212Q 0.24 tolerated(0.16) benign(0.018) TCGA-D5-6930-01 11 76164460 76164460 T - C11orf30 Intron 0.10 TCGA-D5-6930-01 11 76922236 76922236 C T MYO7A Missense_Mutation p.R2031W 0.30 deleterious(0) possibly_damaging(0.897) TCGA-D5-6930-01 11 86106447 86106447 G A CCDC81 Silent p.A209A 0.21 TCGA-D5-6930-01 11 8639442 8639442 C T TRIM66 3'UTR 0.14 TCGA-D5-6930-01 11 8669577 8669577 G A TRIM66 Missense_Mutation p.T114I 0.22 tolerated(1) probably_damaging(0.991) TCGA-D5-6930-01 11 9004959 9004959 C T NRIP3 3'UTR 0.19 TCGA-D5-6930-01 11 92881860 92881860 T - SLC36A4 Frame_Shift_Del p.N453Ifs*4 0.15 TCGA-D5-6930-01 11 94704578 94704579 CT - CWC15 Frame_Shift_Del p.R68Sfs*8 0.21 TCGA-D5-6930-01 11 985521 985521 C T AP2A2 Missense_Mutation p.H301Y 0.24 deleterious(0.05) benign(0.254) TCGA-D5-6930-01 11 994081 994081 C T AP2A2 Silent p.L598L 0.28 TCGA-D5-6930-01 12 10133201 10133201 C T CLEC12A Missense_Mutation p.P144S 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 12 101581230 101581230 G A SLC5A8 Silent p.L299L 0.14 TCGA-D5-6930-01 12 102155051 102155051 A G GNPTAB Missense_Mutation p.Y997H 0.30 deleterious(0.01) probably_damaging(0.935) TCGA-D5-6930-01 12 102471275 102471275 C A NUP37 Missense_Mutation p.V183F 0.45 deleterious(0.01) probably_damaging(0.97) TCGA-D5-6930-01 12 102813362 102813362 G A IGF1 Silent p.C109C 0.35 TCGA-D5-6930-01 12 10324608 10324608 T - OLR1 Frame_Shift_Del p.A24Lfs*19 0.08 TCGA-D5-6930-01 12 104459948 104459948 C T HCFC2 Missense_Mutation p.T56M 0.15 deleterious(0) possibly_damaging(0.635) TCGA-D5-6930-01 12 105508019 105508019 T - KIAA1033 Frame_Shift_Del p.L77Wfs*4 0.17 TCGA-D5-6930-01 12 10583716 10583716 C T KLRC2 Silent p.%3D 0.13 TCGA-D5-6930-01 12 109201538 109201538 C - SSH1 Frame_Shift_Del p.G201Vfs*2 0.23 TCGA-D5-6930-01 12 110206968 110206968 C A FAM222A Missense_Mutation p.L412I 0.21 deleterious(0) probably_damaging(0.979) TCGA-D5-6930-01 12 111801198 111801198 C T FAM109A Missense_Mutation p.A25T 0.44 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 12 112607435 112607435 T C HECTD4 Missense_Mutation p.Y3881C 0.19 probably_damaging(0.971) TCGA-D5-6930-01 12 113836534 113836534 G A SDS Missense_Mutation p.A104V 0.21 deleterious(0) possibly_damaging(0.845) TCGA-D5-6930-01 12 114841672 114841672 G A TBX5 Missense_Mutation p.A11V 0.17 deleterious(0.04) benign(0.08) TCGA-D5-6930-01 12 117479782 117479782 G A TESC Silent p.Y179Y 0.25 TCGA-D5-6930-01 12 119594449 119594449 G A SRRM4 Missense_Mutation p.R561Q 0.25 deleterious_low_confidence(0) unknown(0) TCGA-D5-6930-01 12 120582490 120582490 C T GCN1L1 Missense_Mutation p.D1769N 0.14 possibly_damaging(0.735) TCGA-D5-6930-01 12 120802542 120802542 G A MSI1 Missense_Mutation p.A95V 0.17 deleterious(0) probably_damaging(0.979) TCGA-D5-6930-01 12 122437640 122437640 G A WDR66 Missense_Mutation p.E1009K 0.19 deleterious(0) possibly_damaging(0.769) TCGA-D5-6930-01 12 122618269 122618269 T G MLXIP Silent p.S489S 0.21 TCGA-D5-6930-01 12 123419972 123419972 G A ABCB9 Silent p.L584L 0.16 TCGA-D5-6930-01 12 124268580 124268580 A G DNAH10 Missense_Mutation p.I301M 0.29 benign(0.285) TCGA-D5-6930-01 12 124840066 124840066 C T NCOR2 Missense_Mutation p.R1098H 0.31 probably_damaging(0.999) TCGA-D5-6930-01 12 126137167 126137167 T C TMEM132B Missense_Mutation p.S694P 0.19 deleterious(0.04) benign(0.002) TCGA-D5-6930-01 12 12980304 12980304 C T DDX47 Nonsense_Mutation p.R411* 0.24 TCGA-D5-6930-01 12 130830355 130830355 G A PIWIL1 Missense_Mutation p.R83H 0.12 tolerated(0.07) benign(0.212) TCGA-D5-6930-01 12 132198638 132198638 C T SFSWAP Missense_Mutation p.H81Y 0.24 tolerated(0.19) benign(0.211) TCGA-D5-6930-01 12 132551969 132551969 G A EP400 Missense_Mutation p.V2938I 0.18 possibly_damaging(0.89) TCGA-D5-6930-01 12 14924045 14924045 G A HIST4H4 5'UTR 0.30 TCGA-D5-6930-01 12 1993990 1993990 C T CACNA2D4 Missense_Mutation p.G406S 0.38 deleterious(0) probably_damaging(0.987) TCGA-D5-6930-01 12 21294489 21294489 A G SLCO1B1 5'UTR 0.08 TCGA-D5-6930-01 12 21712605 21712605 T - GYS2 Frame_Shift_Del p.K403Nfs*7 0.19 TCGA-D5-6930-01 12 27817353 27817353 C T PPFIBP1 Missense_Mutation p.T342M 0.19 tolerated(1) benign(0.027) TCGA-D5-6930-01 12 30792504 30792504 G T IPO8 Missense_Mutation p.P812T 0.25 tolerated(0.13) benign(0.318) TCGA-D5-6930-01 12 30863365 30863365 C - CAPRIN2 Frame_Shift_Del p.R902Kfs*19 0.21 TCGA-D5-6930-01 12 3127742 3127742 G A TEAD4 Missense_Mutation p.G172E 0.12 tolerated(0.07) possibly_damaging(0.551) TCGA-D5-6930-01 12 31545621 31545621 G A DENND5B Missense_Mutation p.A1089V 0.16 tolerated(0.37) benign(0.027) TCGA-D5-6930-01 12 32137650 32137650 A T KIAA1551 Missense_Mutation p.D1254V 0.19 tolerated(0.22) benign(0.026) TCGA-D5-6930-01 12 41327658 41327658 T C CNTN1 Silent p.H321H 0.19 TCGA-D5-6930-01 12 44132176 44132176 A G PUS7L Missense_Mutation p.F461L 0.09 tolerated(0.18) benign(0.208) TCGA-D5-6930-01 12 45781970 45781970 C T ANO6 Nonsense_Mutation p.R419* 0.19 TCGA-D5-6930-01 12 50186539 50186539 G A NCKAP5L Missense_Mutation p.R1191W 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-D5-6930-01 12 5023219 5023219 A - KCNA1 3'UTR 0.23 TCGA-D5-6930-01 12 50794778 50794778 C T LARP4 5'UTR 0.20 TCGA-D5-6930-01 12 51102285 51102285 G A DIP2B Silent p.A863A 0.25 TCGA-D5-6930-01 12 51749711 51749711 C T GALNT6 Missense_Mutation p.R545H 0.09 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 12 52407511 52407511 C T GRASP Silent p.G165G 0.19 TCGA-D5-6930-01 12 53201477 53201477 C T KRT4 Missense_Mutation p.D433N 0.18 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 12 53777102 53777102 G A SP1 Silent p.G457G 0.27 TCGA-D5-6930-01 12 53880958 53880958 G - MAP3K12 Frame_Shift_Del p.P73Lfs*62 0.32 TCGA-D5-6930-01 12 54801942 54801942 G A ITGA5 Nonsense_Mutation p.Q257* 0.16 TCGA-D5-6930-01 12 56568507 56568507 A G SMARCC2 Missense_Mutation p.L475P 0.11 deleterious(0) probably_damaging(0.928) TCGA-D5-6930-01 12 57114880 57114881 - G NACA Frame_Shift_Ins p.H145Pfs*12 0.11 TCGA-D5-6930-01 12 57637668 57637668 G A STAC3 Missense_Mutation p.A341V 0.31 tolerated(0.37) benign(0.005) TCGA-D5-6930-01 12 57871337 57871337 G A ARHGAP9 Nonsense_Mutation p.Q221* 0.18 TCGA-D5-6930-01 12 57919377 57919377 C - MBD6 Frame_Shift_Del p.S211Lfs*57 0.16 TCGA-D5-6930-01 12 6122774 6122774 G A VWF Silent p.Y1831Y 0.42 TCGA-D5-6930-01 12 6230425 6230425 G T VWF Silent p.T45T 0.08 TCGA-D5-6930-01 12 62777731 62777732 - A USP15 Frame_Shift_Ins p.P403Tfs*14 0.14 TCGA-D5-6930-01 12 6619249 6619249 G A NCAPD2 Missense_Mutation p.R71Q 0.18 tolerated(0.22) benign(0.097) TCGA-D5-6930-01 12 6666142 6666142 G A NOP2 3'UTR 0.12 TCGA-D5-6930-01 12 6730600 6730600 G A LPAR5 5'UTR 0.40 TCGA-D5-6930-01 12 6761478 6761478 G A ING4 Nonsense_Mutation p.Q203* 0.22 TCGA-D5-6930-01 12 6933327 6933327 G C GPR162 Missense_Mutation p.S88T 0.09 deleterious(0.03) possibly_damaging(0.675) TCGA-D5-6930-01 12 6933750 6933750 G A GPR162 Missense_Mutation p.G229E 0.16 tolerated(1) possibly_damaging(0.856) TCGA-D5-6930-01 12 6939163 6939163 G A LEPREL2 Silent p.T212T 0.37 TCGA-D5-6930-01 12 70949083 70949083 G - PTPRB Frame_Shift_Del p.P1667Lfs*9 0.23 TCGA-D5-6930-01 12 72314609 72314609 C T TBC1D15 Silent p.G583G 0.14 TCGA-D5-6930-01 12 75804255 75804255 A - GLIPR1L2 Frame_Shift_Del p.K94Nfs*105 0.17 TCGA-D5-6930-01 12 7635981 7635981 C T CD163 Missense_Mutation p.A1024T 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-D5-6930-01 12 77417931 77417931 C T E2F7 Missense_Mutation p.R867H 0.29 tolerated(0.6) benign(0.003) TCGA-D5-6930-01 12 77436888 77436888 T G E2F7 Missense_Mutation p.K360N 0.18 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 12 77449858 77449858 T - E2F7 Frame_Shift_Del p.N49Mfs*39 0.18 TCGA-D5-6930-01 12 80762027 80762027 G A OTOGL Missense_Mutation p.G2176S 0.24 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 12 81111126 81111126 G A MYF5 Missense_Mutation p.R95H 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 12 8288324 8288324 G A CLEC4A Missense_Mutation p.E148K 0.23 deleterious(0.02) possibly_damaging(0.513) TCGA-D5-6930-01 12 8376735 8376735 G A FAM90A1 Missense_Mutation p.A67V 0.19 tolerated(0.18) benign(0.095) TCGA-D5-6930-01 12 85279790 85279790 A - SLC6A15 Frame_Shift_Del p.F116Sfs*21 0.11 TCGA-D5-6930-01 12 86374059 86374059 G A MGAT4C Missense_Mutation p.R149C 0.08 tolerated(0.25) benign(0.002) TCGA-D5-6930-01 12 88443059 88443060 - T CEP290 Frame_Shift_Ins p.L2448Tfs*8 0.10 TCGA-D5-6930-01 12 91348633 91348633 G A CCER1 5'UTR 0.09 TCGA-D5-6930-01 12 9227192 9227192 C A A2M Missense_Mutation p.K1240N 0.14 deleterious(0) possibly_damaging(0.878) TCGA-D5-6930-01 12 98987788 98987788 C T SLC25A3 Missense_Mutation p.A11V 0.33 tolerated_low_confidence(0.51) benign(0.048) TCGA-D5-6930-01 12 99007407 99007407 T C IKBIP Missense_Mutation p.K337E 0.20 tolerated(0.07) benign(0.017) TCGA-D5-6930-01 13 109793144 109793144 C T MYO16 Silent p.S1506S 0.12 TCGA-D5-6930-01 13 111077213 111077213 G A COL4A2 Missense_Mutation p.V105M 0.29 possibly_damaging(0.734) TCGA-D5-6930-01 13 111290808 111290808 G A CARKD Silent p.S371S 0.13 TCGA-D5-6930-01 13 113536304 113536304 G A ATP11A 3'UTR 0.33 TCGA-D5-6930-01 13 113979936 113979936 C - GRTP1 Intron 0.16 TCGA-D5-6930-01 13 114325866 114325866 G A GRK1 Missense_Mutation p.A294T 0.13 deleterious(0.05) possibly_damaging(0.67) TCGA-D5-6930-01 13 21303211 21303211 G A N6AMT2 3'UTR 0.21 TCGA-D5-6930-01 13 21395912 21395912 G T XPO4 Missense_Mutation p.F368L 0.19 tolerated(0.57) benign(0.003) TCGA-D5-6930-01 13 25262501 25262501 G A ATP12A Silent p.G91G 0.25 TCGA-D5-6930-01 13 26436540 26436540 A C ATP8A2 Missense_Mutation p.R1059S 0.16 tolerated(0.59) benign(0.003) TCGA-D5-6930-01 13 27649510 27649510 T - USP12 Frame_Shift_Del p.K250Nfs*4 0.17 TCGA-D5-6930-01 13 29599559 29599559 C T MTUS2 Missense_Mutation p.R252C 0.27 tolerated(0.3) benign(0.002) TCGA-D5-6930-01 13 29599917 29599917 G A MTUS2 Missense_Mutation p.G371D 0.25 tolerated(0.67) benign(0.086) TCGA-D5-6930-01 13 31903822 31903822 C T B3GALTL 3'UTR 0.12 TCGA-D5-6930-01 13 32910788 32910788 G A BRCA2 Missense_Mutation p.A766T 0.23 tolerated(1) benign(0.009) TCGA-D5-6930-01 13 32971139 32971139 G A BRCA2 Silent p.P3202P 0.23 TCGA-D5-6930-01 13 37271618 37271619 - A SERTM1 3'UTR 0.18 TCGA-D5-6930-01 13 39613778 39613778 C T NHLRC3 Silent p.D105D 0.10 TCGA-D5-6930-01 13 50594657 50594657 A G KCNRG 3'UTR 0.29 TCGA-D5-6930-01 13 51509077 51509077 C T RNASEH2B Silent p.I126I 0.28 TCGA-D5-6930-01 13 52718925 52718925 C A NEK3 Missense_Mutation p.K235N 0.35 tolerated(0.06) probably_damaging(0.955) TCGA-D5-6930-01 13 53624246 53624246 G A OLFM4 Silent p.A291A 0.18 TCGA-D5-6930-01 13 58299162 58299162 T G PCDH17 Missense_Mutation p.L1072V 0.16 tolerated_low_confidence(0.26) benign(0.003) TCGA-D5-6930-01 13 60240695 60240695 T - DIAPH3 3'UTR 0.34 TCGA-D5-6930-01 13 70275687 70275689 CTA - KLHL1 3'UTR 0.13 TCGA-D5-6930-01 13 75869055 75869055 G T TBC1D4 Missense_Mutation p.A1084D 0.21 deleterious(0.02) probably_damaging(0.956) TCGA-D5-6930-01 13 75936588 75936588 G - TBC1D4 Frame_Shift_Del p.S219Qfs*19 0.19 TCGA-D5-6930-01 13 76427463 76427463 T C LMO7 Missense_Mutation p.S1301P 0.16 deleterious(0) possibly_damaging(0.811) TCGA-D5-6930-01 13 77672768 77672768 G A MYCBP2 Missense_Mutation p.R2803C 0.29 benign(0.443) TCGA-D5-6930-01 13 78335167 78335167 G A SLAIN1 Missense_Mutation p.R376H 0.17 deleterious(0) probably_damaging(0.923) TCGA-D5-6930-01 13 79189645 79189645 A - RNF219 3'UTR 0.28 TCGA-D5-6930-01 13 88328294 88328294 C T SLITRK5 Silent p.Y217Y 0.19 TCGA-D5-6930-01 13 88329199 88329199 C T SLITRK5 Missense_Mutation p.A519V 0.24 deleterious(0.01) benign(0.268) TCGA-D5-6930-01 13 94482473 94482473 G A GPC6 Missense_Mutation p.G129D 0.29 deleterious(0) possibly_damaging(0.859) TCGA-D5-6930-01 14 100595909 100595909 G A EVL Missense_Mutation p.A243T 0.14 tolerated(0.05) benign(0.284) TCGA-D5-6930-01 14 101347507 101347507 G - RTL1 Frame_Shift_Del p.Q1207Rfs*77 0.24 TCGA-D5-6930-01 14 102499761 102499761 C T DYNC1H1 Silent p.Y3451Y 0.21 TCGA-D5-6930-01 14 104618523 104618523 G A KIF26A Missense_Mutation p.A154T 0.14 tolerated(0.35) benign(0.001) TCGA-D5-6930-01 14 105071080 105071080 G A TMEM179 5'UTR 0.13 TCGA-D5-6930-01 14 105353760 105353760 G A CEP170B Missense_Mutation p.A1062T 0.29 tolerated(0.81) benign(0.002) TCGA-D5-6930-01 14 105353834 105353834 G A CEP170B Silent p.P1086P 0.17 TCGA-D5-6930-01 14 105478001 105478001 C T CDCA4 Missense_Mutation p.R89Q 0.31 tolerated(0.91) benign(0.007) TCGA-D5-6930-01 14 106361499 106361499 C T IGHD3-16 Silent p.S10S 0.24 TCGA-D5-6930-01 14 19563232 19563232 T C POTEG Intron 0.38 TCGA-D5-6930-01 14 20404055 20404055 C T OR4K1 Missense_Mutation p.A77V 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6930-01 14 20876262 20876262 C T TEP1 Missense_Mutation p.A113T 0.13 tolerated_low_confidence(0.22) benign(0.032) TCGA-D5-6930-01 14 21550055 21550055 G T ARHGEF40 Missense_Mutation p.A1010S 0.32 tolerated(0.34) benign(0.009) TCGA-D5-6930-01 14 21820891 21820891 G A SUPT16H Missense_Mutation p.R1029C 0.13 deleterious(0.01) benign(0.041) TCGA-D5-6930-01 14 21963446 21963446 C A TOX4 Nonsense_Mutation p.S567* 0.24 TCGA-D5-6930-01 14 23495175 23495175 A - PSMB5 3'UTR 0.32 TCGA-D5-6930-01 14 24108169 24108169 C T DHRS2 Silent p.G32G 0.19 TCGA-D5-6930-01 14 24113688 24113688 C - DHRS2 Frame_Shift_Del p.K206Rfs*5 0.07 TCGA-D5-6930-01 14 31188570 31188570 C T SCFD1 Missense_Mutation p.R575W 0.29 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 14 31813196 31813196 C T HEATR5A Missense_Mutation p.C752Y 0.14 tolerated(0.26) benign(0.044) TCGA-D5-6930-01 14 32562674 32562675 - T ARHGAP5 Frame_Shift_Ins p.S936* 0.23 TCGA-D5-6930-01 14 37132420 37132420 C T PAX9 Missense_Mutation p.A108V 0.24 deleterious(0) probably_damaging(0.978) TCGA-D5-6930-01 14 38723786 38723786 G A CLEC14A Missense_Mutation p.A481V 0.28 tolerated_low_confidence(0.16) benign(0.027) TCGA-D5-6930-01 14 38724735 38724735 G A CLEC14A Missense_Mutation p.R165C 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-D5-6930-01 14 50256275 50256276 - T NEMF Frame_Shift_Ins p.M879Nfs*10 0.11 TCGA-D5-6930-01 14 51223869 51223869 C T NIN Silent p.E1293E 0.25 TCGA-D5-6930-01 14 52156444 52156444 C T FRMD6 5'UTR 0.22 TCGA-D5-6930-01 14 52477679 52477679 C T NID2 Missense_Mutation p.A1213T 0.10 tolerated(0.09) possibly_damaging(0.602) TCGA-D5-6930-01 14 52735331 52735331 C A PTGDR Missense_Mutation p.L267M 0.17 deleterious(0) probably_damaging(0.995) TCGA-D5-6930-01 14 55215638 55215638 C T SAMD4A Missense_Mutation p.A362V 0.21 deleterious(0.01) benign(0.404) TCGA-D5-6930-01 14 58698938 58698938 G A ACTR10 Missense_Mutation p.R342Q 0.24 tolerated(0.07) benign(0.042) TCGA-D5-6930-01 14 58932587 58932587 C T KIAA0586 Silent p.D751D 0.09 TCGA-D5-6930-01 14 60938350 60938351 TC - C14orf39 Frame_Shift_Del p.E144Tfs*2 0.18 TCGA-D5-6930-01 14 64619357 64619357 G - SYNE2 Frame_Shift_Del p.A5240Qfs*5 0.08 TCGA-D5-6930-01 14 64937613 64937613 A G AKAP5 3'UTR 0.18 TCGA-D5-6930-01 14 65008498 65008498 G A HSPA2 Missense_Mutation p.D311N 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D5-6930-01 14 65242012 65242012 C T SPTB Missense_Mutation p.R1558H 0.09 tolerated(0.08) benign(0.032) TCGA-D5-6930-01 14 71434934 71434934 G A PCNX Missense_Mutation p.R163H 0.28 deleterious(0.04) benign(0.433) TCGA-D5-6930-01 14 72117175 72117175 C T SIPA1L1 Nonsense_Mutation p.R648* 0.14 TCGA-D5-6930-01 14 73718512 73718512 C T PAPLN Missense_Mutation p.R244W 0.17 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 14 73727447 73727447 C T PAPLN Silent p.V645V 0.18 TCGA-D5-6930-01 14 74059031 74059031 C T ACOT4 Missense_Mutation p.A123V 0.17 tolerated(0.25) benign(0.033) TCGA-D5-6930-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.54 TCGA-D5-6930-01 14 74762669 74762669 C T ABCD4 Missense_Mutation p.G186R 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 14 74999162 74999162 G T LTBP2 Missense_Mutation p.L652I 0.30 tolerated(0.12) probably_damaging(0.952) TCGA-D5-6930-01 14 77948699 77948699 G - ISM2 Frame_Shift_Del p.D315Ifs*94 0.13 TCGA-D5-6930-01 14 89094057 89094057 A G EML5 Silent p.T1488T 0.10 TCGA-D5-6930-01 14 91113318 91113318 G A TTC7B Silent p.L523L 0.12 TCGA-D5-6930-01 14 91340006 91340006 G A RPS6KA5 Silent p.A710A 0.18 TCGA-D5-6930-01 14 91700356 91700356 C T GPR68 Missense_Mutation p.A347T 0.17 tolerated_low_confidence(0.45) benign(0.001) TCGA-D5-6930-01 14 93299649 93299649 T C GOLGA5 Silent p.S634S 0.19 TCGA-D5-6930-01 14 94088858 94088858 C T UNC79 Missense_Mutation p.S1583L 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D5-6930-01 14 94405707 94405707 C T ASB2 Missense_Mutation p.R455H 0.23 deleterious(0.02) possibly_damaging(0.82) TCGA-D5-6930-01 14 94405752 94405752 T A ASB2 Missense_Mutation p.D440V 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 14 94405860 94405860 G A ASB2 Missense_Mutation p.A404V 0.22 deleterious(0) benign(0.139) TCGA-D5-6930-01 14 94511022 94511022 G A OTUB2 Missense_Mutation p.V132M 0.24 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 14 94512078 94512078 C T OTUB2 Missense_Mutation p.A172V 0.35 tolerated(0.49) probably_damaging(0.997) TCGA-D5-6930-01 15 101448629 101448629 G A ALDH1A3 Missense_Mutation p.A470T 0.14 tolerated(0.11) benign(0.238) TCGA-D5-6930-01 15 102224380 102224380 A - TARSL2 Frame_Shift_Del p.F516Lfs*16 0.23 TCGA-D5-6930-01 15 22368688 22368688 T C OR4M2 Missense_Mutation p.I38T 0.09 tolerated(0.8) possibly_damaging(0.521) TCGA-D5-6930-01 15 22929887 22929887 G A CYFIP1 Silent p.A187A 0.15 TCGA-D5-6930-01 15 23931671 23931671 G A NDN Missense_Mutation p.R232W 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 15 26026195 26026195 G A ATP10A Missense_Mutation p.R209W 0.29 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 15 28413605 28413605 G A HERC2 Missense_Mutation p.A3454V 0.20 benign(0.001) TCGA-D5-6930-01 15 28460799 28460799 C T HERC2 Missense_Mutation p.A2060T 0.13 benign(0.009) TCGA-D5-6930-01 15 40564745 40564745 G A PAK6 Silent p.A393A 0.12 TCGA-D5-6930-01 15 42041348 42041348 C T MGA Missense_Mutation p.P1848L 0.19 tolerated(0.06) possibly_damaging(0.694) TCGA-D5-6930-01 15 42434222 42434222 G T PLA2G4F Missense_Mutation p.A837D 0.23 deleterious(0) probably_damaging(0.986) TCGA-D5-6930-01 15 42519101 42519101 G A TMEM87A Missense_Mutation p.R436W 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-D5-6930-01 15 42564314 42564314 T - TMEM87A Frame_Shift_Del p.N51Ifs*17 0.26 TCGA-D5-6930-01 15 43067897 43067897 G T TTBK2 Silent p.T478T 0.22 TCGA-D5-6930-01 15 44962066 44962066 C T PATL2 Missense_Mutation p.R262Q 0.29 tolerated(0.38) possibly_damaging(0.56) TCGA-D5-6930-01 15 45387746 45387746 T A DUOX2 Missense_Mutation p.K1376N 0.26 deleterious(0.01) benign(0.193) TCGA-D5-6930-01 15 45443357 45443357 C T DUOX1 Silent p.S975S 0.26 TCGA-D5-6930-01 15 48539536 48539536 T G SLC12A1 Silent p.A521A 0.36 TCGA-D5-6930-01 15 51350188 51350188 C T TNFAIP8L3 Missense_Mutation p.A257T 0.13 tolerated(0.07) probably_damaging(0.958) TCGA-D5-6930-01 15 52900941 52900941 C T FAM214A Missense_Mutation p.E724K 0.18 deleterious(0.05) benign(0.077) TCGA-D5-6930-01 15 56968924 56968924 A - ZNF280D Frame_Shift_Del p.C452Afs*16 0.12 TCGA-D5-6930-01 15 59181649 59181649 G A SLTM Silent p.R728R 0.22 TCGA-D5-6930-01 15 59970224 59970224 C T BNIP2 Missense_Mutation p.A241T 0.09 tolerated(0.07) benign(0.28) TCGA-D5-6930-01 15 65942868 65942868 G T SLC24A1 Missense_Mutation p.C794F 0.21 benign(0.049) TCGA-D5-6930-01 15 66618540 66618540 C T DIS3L Missense_Mutation p.T680I 0.38 deleterious(0.01) benign(0.253) TCGA-D5-6930-01 15 69222985 69222985 C T SPESP1 5'UTR 0.23 TCGA-D5-6930-01 15 69238555 69238555 A - SPESP1 Frame_Shift_Del p.I230Ffs*2 0.26 TCGA-D5-6930-01 15 69331226 69331226 T - NOX5 Frame_Shift_Del p.H470Tfs*10 0.16 TCGA-D5-6930-01 15 72502812 72502812 G A PKM Missense_Mutation p.A85V 0.21 tolerated(0.08) benign(0.007) TCGA-D5-6930-01 15 73889384 73889384 C T NPTN Missense_Mutation p.A140T 0.26 deleterious(0) possibly_damaging(0.722) TCGA-D5-6930-01 15 74625573 74625573 G A CCDC33 Intron 0.31 TCGA-D5-6930-01 15 74659858 74659858 G - CYP11A1 Frame_Shift_Del p.R24Gfs*37 0.25 TCGA-D5-6930-01 15 75593999 75593999 C T DNM1P34 RNA 0.29 TCGA-D5-6930-01 15 75975362 75975362 C T CSPG4 Silent p.A1490A 0.26 TCGA-D5-6930-01 15 75977794 75977794 G A CSPG4 Silent p.G1346G 0.11 TCGA-D5-6930-01 15 76135964 76135964 C T UBE2Q2 5'UTR 0.27 TCGA-D5-6930-01 15 78317804 78317804 G A TBC1D2B Missense_Mutation p.R295C 0.24 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 15 79586707 79586707 T A ANKRD34C Missense_Mutation p.S361T 0.24 tolerated(0.61) benign(0.002) TCGA-D5-6930-01 15 81296263 81296263 T - MESDC1 3'UTR 0.29 TCGA-D5-6930-01 15 82422889 82422889 T G EFTUD1 Missense_Mutation p.D1063A 0.10 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 15 83532955 83532955 C T HOMER2 Silent p.T117T 0.13 TCGA-D5-6930-01 15 85401123 85401123 C G ALPK3 Missense_Mutation p.R1254G 0.21 deleterious(0.01) benign(0.414) TCGA-D5-6930-01 15 85467240 85467240 C - SLC28A1 Frame_Shift_Del p.Y329Tfs*5 0.13 TCGA-D5-6930-01 15 89744315 89744315 A - ABHD2 3'UTR 0.11 TCGA-D5-6930-01 15 90020391 90020391 C T RHCG Missense_Mutation p.A387T 0.29 tolerated(0.15) benign(0.009) TCGA-D5-6930-01 15 90173596 90173596 G A KIF7 Silent p.C1080C 0.10 TCGA-D5-6930-01 16 1268293 1268293 C T CACNA1H Silent p.F1843F 0.30 TCGA-D5-6930-01 16 1393492 1393492 C T BAIAP3 Missense_Mutation p.A490V 0.26 tolerated(0.1) benign(0.304) TCGA-D5-6930-01 16 15222089 15222089 C T RP11-1186N24.5 RNA 0.14 TCGA-D5-6930-01 16 1551467 1551467 C T TELO2 Missense_Mutation p.P443L 0.12 deleterious(0.04) benign(0.003) TCGA-D5-6930-01 16 1561127 1561127 G A IFT140 Missense_Mutation p.R1403W 0.24 deleterious(0) probably_damaging(0.981) TCGA-D5-6930-01 16 15818530 15818530 G A MYH11 Missense_Mutation p.R1371C 0.15 probably_damaging(1) TCGA-D5-6930-01 16 16208700 16208700 C T ABCC1 Silent p.L1053L 0.23 TCGA-D5-6930-01 16 162760 162760 C T NPRL3 Silent p.P136P 0.23 TCGA-D5-6930-01 16 18550232 18550232 C T NOMO2 Missense_Mutation p.E340K 0.23 tolerated(0.78) benign(0.017) TCGA-D5-6930-01 16 18853621 18853621 G A SMG1 Silent p.G2125G 0.09 TCGA-D5-6930-01 16 19451955 19451955 G A TMC5 Missense_Mutation p.A199T 0.10 tolerated_low_confidence(0.51) benign(0) TCGA-D5-6930-01 16 2018825 2018825 C A RNF151 Missense_Mutation p.L213M 0.28 tolerated(0.09) benign(0.02) TCGA-D5-6930-01 16 20331702 20331703 - C GP2 Frame_Shift_Ins p.E250Gfs*33 0.26 TCGA-D5-6930-01 16 20807775 20807776 - A ACSM3 Frame_Shift_Ins p.T549Nfs*29 0.21 TCGA-D5-6930-01 16 20944794 20944794 G A DNAH3 Silent p.P4011P 0.16 TCGA-D5-6930-01 16 20996941 20996941 T - DNAH3 Frame_Shift_Del p.I2375Sfs*8 0.12 TCGA-D5-6930-01 16 21109952 21109952 C T DNAH3 Silent p.A835A 0.19 TCGA-D5-6930-01 16 21145656 21145656 C T DNAH3 Missense_Mutation p.A336T 0.13 tolerated(0.1) benign(0.017) TCGA-D5-6930-01 16 22269946 22269946 C T EEF2K Silent p.D387D 0.18 TCGA-D5-6930-01 16 2231037 2231037 G - CASKIN1 Frame_Shift_Del p.Q778Rfs*27 0.22 TCGA-D5-6930-01 16 22926392 22926392 C T HS3ST2 Missense_Mutation p.R205W 0.18 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 16 2336922 2336922 G A ABCA3 Silent p.G1017G 0.32 TCGA-D5-6930-01 16 24950781 24950781 G - ARHGAP17 Frame_Shift_Del p.P543Lfs*55 0.27 TCGA-D5-6930-01 16 2546750 2546750 G A RP11-20I23.1 Missense_Mutation p.V201M 0.28 tolerated(0.24) benign(0.04) TCGA-D5-6930-01 16 27373963 27373963 A G IL4R Silent p.S430S 0.20 TCGA-D5-6930-01 16 28913393 28913393 C T ATP2A1 Silent p.G770G 0.14 TCGA-D5-6930-01 16 29679457 29679457 G A SPN 3'UTR 0.16 TCGA-D5-6930-01 16 29819984 29819984 C T MAZ Silent p.L401L 0.16 TCGA-D5-6930-01 16 30021391 30021391 C A DOC2A Missense_Mutation p.E51D 0.16 tolerated(0.51) benign(0.002) TCGA-D5-6930-01 16 30206019 30206019 G T SULT1A3 5'Flank 0.09 TCGA-D5-6930-01 16 30676984 30676984 G A FBRS Missense_Mutation p.R577Q 0.25 possibly_damaging(0.85) TCGA-D5-6930-01 16 30750978 30750978 G A SRCAP Missense_Mutation p.R3206H 0.14 unknown(0) TCGA-D5-6930-01 16 30771609 30771609 A G C16orf93 Silent p.C155C 0.22 TCGA-D5-6930-01 16 30794879 30794879 G A ZNF629 Missense_Mutation p.T257I 0.14 deleterious(0) probably_damaging(0.985) TCGA-D5-6930-01 16 30794932 30794932 G A ZNF629 Silent p.C239C 0.13 TCGA-D5-6930-01 16 3085306 3085306 G A CCDC64B Silent p.A64A 0.25 TCGA-D5-6930-01 16 30941607 30941607 C T FBXL19 Missense_Mutation p.R355W 0.23 tolerated(0.06) probably_damaging(0.945) TCGA-D5-6930-01 16 30976237 30976237 C - SETD1A Frame_Shift_Del p.P393Lfs*104 0.19 TCGA-D5-6930-01 16 31123215 31123215 G A BCKDK Missense_Mutation p.A321T 0.15 deleterious(0.01) benign(0.196) TCGA-D5-6930-01 16 31497134 31497134 C T SLC5A2 Missense_Mutation p.R130C 0.35 deleterious(0.01) probably_damaging(0.953) TCGA-D5-6930-01 16 321060 321060 C T RGS11 Missense_Mutation p.G301D 0.18 deleterious(0) possibly_damaging(0.591) TCGA-D5-6930-01 16 32890965 32890965 T C SLC6A10P RNA 0.15 TCGA-D5-6930-01 16 3367388 3367388 T G ZNF75A Missense_Mutation p.L137R 0.41 tolerated(0.11) benign(0.02) TCGA-D5-6930-01 16 4445303 4445303 G A CORO7 Missense_Mutation p.P201L 0.16 tolerated(0.21) benign(0.032) TCGA-D5-6930-01 16 49672147 49672147 C T ZNF423 Missense_Mutation p.D306N 0.15 tolerated(0.16) possibly_damaging(0.484) TCGA-D5-6930-01 16 51174297 51174297 G A SALL1 Silent p.A612A 0.12 TCGA-D5-6930-01 16 57714236 57714236 G A GPR97 Missense_Mutation p.V243M 0.30 deleterious(0.03) possibly_damaging(0.907) TCGA-D5-6930-01 16 57756984 57756984 C G CCDC135 Missense_Mutation p.N493K 0.30 tolerated(0.07) benign(0.168) TCGA-D5-6930-01 16 57789750 57789750 C A KATNB1 Intron 0.22 TCGA-D5-6930-01 16 66643398 66643398 G A CMTM3 Missense_Mutation p.A122T 0.25 tolerated(0.59) benign(0.061) TCGA-D5-6930-01 16 66844645 66844645 G A NAE1 Silent p.A355A 0.36 TCGA-D5-6930-01 16 66947092 66947092 G A CDH16 Silent p.N332N 0.21 TCGA-D5-6930-01 16 67237794 67237794 C A ELMO3 3'UTR 0.19 TCGA-D5-6930-01 16 67318906 67318906 C T PLEKHG4 Silent p.S661S 0.36 TCGA-D5-6930-01 16 67432123 67432123 G A ZDHHC1 Missense_Mutation p.P307S 0.24 tolerated(0.15) benign(0.007) TCGA-D5-6930-01 16 67877210 67877210 C T THAP11 Silent p.G251G 0.10 TCGA-D5-6930-01 16 67974003 67974003 C A LCAT Missense_Mutation p.S376I 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 16 68023254 68023254 T A DPEP2 Missense_Mutation p.I348F 0.29 tolerated(0.31) possibly_damaging(0.841) TCGA-D5-6930-01 16 68100285 68100285 G A DUS2 Silent p.S161S 0.28 TCGA-D5-6930-01 16 68264869 68264869 C T ESRP2 Silent p.T591T 0.21 TCGA-D5-6930-01 16 68325154 68325154 G A SLC7A6 Silent p.T279T 0.16 TCGA-D5-6930-01 16 70406081 70406081 T A DDX19A 3'UTR 0.23 TCGA-D5-6930-01 16 71570593 71570593 A - CHST4 Frame_Shift_Del p.M7* 0.29 TCGA-D5-6930-01 16 71964047 71964047 G A IST1 3'Flank 0.24 TCGA-D5-6930-01 16 72111036 72111036 C T HPR 3'UTR 0.15 TCGA-D5-6930-01 16 72828335 72828335 G A ZFHX3 Missense_Mutation p.A2749V 0.24 unknown(0) TCGA-D5-6930-01 16 74382858 74382858 C T RP11-252A24.2 RNA 0.25 TCGA-D5-6930-01 16 74501659 74501659 C T GLG1 Missense_Mutation p.A842T 0.16 deleterious(0.01) possibly_damaging(0.852) TCGA-D5-6930-01 16 75688296 75688296 G A TERF2IP Splice_Site p.X265_splice 0.22 TCGA-D5-6930-01 16 78466412 78466412 A - WWOX Frame_Shift_Del p.K274Nfs*53 0.18 TCGA-D5-6930-01 16 80718937 80718937 C T CDYL2 Silent p.T38T 0.14 TCGA-D5-6930-01 16 81077156 81077156 G A ATMIN Silent p.L351L 0.24 TCGA-D5-6930-01 16 81703765 81703765 C T CMIP Nonsense_Mutation p.R282* 0.21 TCGA-D5-6930-01 16 81711959 81711959 C T CMIP Missense_Mutation p.R372C 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D5-6930-01 16 81968073 81968073 G A PLCG2 Missense_Mutation p.A927T 0.37 deleterious(0.01) benign(0.434) TCGA-D5-6930-01 16 84215604 84215604 C T TAF1C Missense_Mutation p.R261H 0.17 tolerated(1) benign(0.004) TCGA-D5-6930-01 16 85010778 85010778 G A ZDHHC7 Missense_Mutation p.L262F 0.26 tolerated(1) probably_damaging(0.915) TCGA-D5-6930-01 16 86612522 86612522 G A FOXL1 Missense_Mutation p.A65T 0.11 deleterious(0) probably_damaging(0.943) TCGA-D5-6930-01 16 87723689 87723689 C T JPH3 Missense_Mutation p.R575W 0.33 deleterious(0.05) benign(0) TCGA-D5-6930-01 16 88105787 88105787 C T BANP Missense_Mutation p.A486V 0.20 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-D5-6930-01 16 88494973 88494973 G A ZNF469 Silent p.P365P 0.18 TCGA-D5-6930-01 16 88721771 88721771 G A MVD Missense_Mutation p.R245W 0.28 deleterious(0.05) benign(0.248) TCGA-D5-6930-01 16 88779062 88779062 C A CTU2 Nonsense_Mutation p.C162* 0.15 TCGA-D5-6930-01 16 88781696 88781696 C T CTU2 3'UTR 0.17 TCGA-D5-6930-01 16 88783090 88783090 G A PIEZO1 Missense_Mutation p.A2268V 0.39 deleterious(0.03) possibly_damaging(0.573) TCGA-D5-6930-01 16 88793133 88793133 T C PIEZO1 Missense_Mutation p.N1230S 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-D5-6930-01 16 89178629 89178629 C T ACSF3 Missense_Mutation p.R318C 0.29 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 16 89256830 89256830 G - CDH15 Frame_Shift_Del p.A388Hfs*89 0.35 TCGA-D5-6930-01 16 89756990 89756990 A G CDK10 Missense_Mutation p.I64V 0.19 tolerated(0.12) benign(0.025) TCGA-D5-6930-01 16 90032406 90032406 C T DEF8 3'UTR 0.11 TCGA-D5-6930-01 17 1562781 1562781 C - PRPF8 Frame_Shift_Del p.D1670Tfs*23 0.23 TCGA-D5-6930-01 17 16342630 16342631 TT - TRPV2 3'Flank 0.23 TCGA-D5-6930-01 17 1635700 1635700 A T WDR81 Silent p.G1413G 0.20 TCGA-D5-6930-01 17 17062024 17062024 G A MPRIP Missense_Mutation p.R585H 0.23 tolerated(0.08) benign(0.214) TCGA-D5-6930-01 17 17719999 17719999 G T SREBF1 Missense_Mutation p.L637M 0.19 tolerated(0.19) benign(0.086) TCGA-D5-6930-01 17 17919906 17919906 G A LRRC48 Missense_Mutation p.R498H 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-D5-6930-01 17 18167449 18167449 G A MIEF2 Missense_Mutation p.G257R 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 17 20884936 20884936 C T RP11-381P6.1 RNA 0.25 TCGA-D5-6930-01 17 21207864 21207864 C A MAP2K3 Missense_Mutation p.A232D 0.11 deleterious(0) probably_damaging(0.984) TCGA-D5-6930-01 17 2280048 2280048 C T SGSM2 Silent p.D877D 0.24 TCGA-D5-6930-01 17 263261 263261 C T C17orf97 Silent p.P209P 0.18 TCGA-D5-6930-01 17 26666557 26666557 G A TNFAIP1 Missense_Mutation p.D4N 0.22 deleterious_low_confidence(0.01) benign(0.271) TCGA-D5-6930-01 17 26732155 26732155 C A SLC46A1 Missense_Mutation p.S187I 0.33 tolerated(0.1) benign(0.049) TCGA-D5-6930-01 17 26911203 26911203 C T RP11-192H23.4 Missense_Mutation p.A198T 0.23 tolerated_low_confidence(0.27) unknown(0) TCGA-D5-6930-01 17 27068130 27068130 G C NEK8 Missense_Mutation p.Q589H 0.23 deleterious(0.03) benign(0.223) TCGA-D5-6930-01 17 27086655 27086655 G A FAM222B Missense_Mutation p.P108S 0.30 tolerated(0.18) possibly_damaging(0.763) TCGA-D5-6930-01 17 27936394 27936394 C A ANKRD13B Silent p.G259G 0.26 TCGA-D5-6930-01 17 27963410 27963410 G T SSH2 Missense_Mutation p.A586D 0.22 deleterious_low_confidence(0.01) benign(0.258) TCGA-D5-6930-01 17 28886637 28886637 G - TBC1D29 5'UTR 0.20 TCGA-D5-6930-01 17 29258979 29258979 G A ADAP2 Silent p.S130S 0.09 TCGA-D5-6930-01 17 2934291 2934291 C T RAP1GAP2 Missense_Mutation p.A728V 0.12 tolerated_low_confidence(0.25) benign(0.001) TCGA-D5-6930-01 17 33325682 33325682 G - LIG3 Frame_Shift_Del p.A685Pfs*23 0.16 TCGA-D5-6930-01 17 3336710 3336710 G A OR1E2 Silent p.T142T 0.20 TCGA-D5-6930-01 17 3385047 3385047 G T ASPA Missense_Mutation p.E129D 0.25 tolerated(0.23) probably_damaging(0.999) TCGA-D5-6930-01 17 33875867 33875867 G A SLFN14 Silent p.H710H 0.18 TCGA-D5-6930-01 17 33884425 33884425 T - SLFN14 Frame_Shift_Del p.V220Sfs*43 0.13 TCGA-D5-6930-01 17 34062412 34062412 C T RASL10B Missense_Mutation p.T70M 0.14 deleterious(0) possibly_damaging(0.839) TCGA-D5-6930-01 17 34935781 34935781 C T GGNBP2 Missense_Mutation p.R318W 0.23 deleterious(0) probably_damaging(0.984) TCGA-D5-6930-01 17 35899312 35899312 G A SYNRG Silent p.C1134C 0.20 TCGA-D5-6930-01 17 36483117 36483117 G A GPR179 Missense_Mutation p.A2112V 0.28 deleterious(0.05) benign(0.01) TCGA-D5-6930-01 17 36704863 36704863 G A SRCIN1 Missense_Mutation p.S1067F 0.15 deleterious(0) probably_damaging(0.989) TCGA-D5-6930-01 17 36719666 36719666 C T SRCIN1 Silent p.A211A 0.34 TCGA-D5-6930-01 17 37188435 37188435 G A LRRC37A11P RNA 0.15 TCGA-D5-6930-01 17 37826415 37826415 G - PNMT Frame_Shift_Del p.H210Tfs*20 0.18 TCGA-D5-6930-01 17 38175766 38175766 G A MED24 3'UTR 0.17 TCGA-D5-6930-01 17 38176550 38176550 G A MED24 Missense_Mutation p.R894W 0.26 deleterious(0) possibly_damaging(0.812) TCGA-D5-6930-01 17 38991855 38991855 G A TMEM99 3'UTR 0.25 TCGA-D5-6930-01 17 39137242 39137242 C A KRT40 Missense_Mutation p.Q283H 0.27 deleterious(0) probably_damaging(0.989) TCGA-D5-6930-01 17 39182991 39182991 C T KRTAP1-5 Silent p.T139T 0.14 TCGA-D5-6930-01 17 39262256 39262256 G A KRTAP4-9 Missense_Mutation p.A206T 0.20 tolerated(0.18) unknown(0) TCGA-D5-6930-01 17 39296088 39296088 G A KRTAP4-6 3'UTR 0.20 TCGA-D5-6930-01 17 3947614 3947614 T C ZZEF1 Missense_Mutation p.K2024E 0.27 tolerated(0.63) benign(0.001) TCGA-D5-6930-01 17 39637035 39637035 G A KRT35 Silent p.N105N 0.31 TCGA-D5-6930-01 17 40120753 40120753 G A CNP Missense_Mutation p.R224Q 0.23 tolerated(0.63) benign(0) TCGA-D5-6930-01 17 40716573 40716573 G A COASY Missense_Mutation p.G371E 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 17 40840916 40840916 A T CNTNAP1 Silent p.R493R 0.22 TCGA-D5-6930-01 17 40948563 40948563 G - WNK4 Frame_Shift_Del p.V1234* 0.20 TCGA-D5-6930-01 17 41020330 41020330 C T AOC4P RNA 0.26 TCGA-D5-6930-01 17 41891392 41891392 G A MPP3 Silent p.G414G 0.16 TCGA-D5-6930-01 17 42272199 42272199 C T ATXN7L3 Missense_Mutation p.R232H 0.37 deleterious(0.05) benign(0.187) TCGA-D5-6930-01 17 42337238 42337238 T C SLC4A1 Missense_Mutation p.D183G 0.11 tolerated(0.07) benign(0.001) TCGA-D5-6930-01 17 42461310 42461310 G A ITGA2B Missense_Mutation p.A317V 0.28 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 17 42636147 42636147 C A FZD2 Missense_Mutation p.A364D 0.30 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 17 42636287 42636287 C A FZD2 Missense_Mutation p.P411T 0.22 tolerated(0.21) benign(0.002) TCGA-D5-6930-01 17 42828275 42828275 C T DBF4B Missense_Mutation p.P501L 0.22 deleterious_low_confidence(0) benign(0) TCGA-D5-6930-01 17 43531274 43531274 G - PLEKHM1 Frame_Shift_Del p.E649Rfs*62 0.22 TCGA-D5-6930-01 17 43592024 43592024 T C LRRC37A4P RNA 0.07 TCGA-D5-6930-01 17 44626388 44626388 T C LRRC37A2 Missense_Mutation p.S1295P 0.09 tolerated(0.23) benign(0.188) TCGA-D5-6930-01 17 44788456 44788456 G A NSF Missense_Mutation p.R533H 0.17 tolerated(0.08) benign(0.004) TCGA-D5-6930-01 17 45299148 45299148 C T MYL4 Silent p.G138G 0.14 TCGA-D5-6930-01 17 4576678 4576678 G A PELP1 Missense_Mutation p.T571M 0.30 probably_damaging(0.98) TCGA-D5-6930-01 17 45925287 45925287 G A SP6 Missense_Mutation p.A170V 0.27 tolerated(0.06) benign(0.001) TCGA-D5-6930-01 17 4621263 4621263 G A ARRB2 Missense_Mutation p.R210H 0.16 deleterious(0.03) possibly_damaging(0.904) TCGA-D5-6930-01 17 4638717 4638717 C - CXCL16 Frame_Shift_Del p.A149Hfs*26 0.10 TCGA-D5-6930-01 17 46655594 46655594 G A HOXB4 Missense_Mutation p.P30S 0.18 deleterious(0.01) benign(0.391) TCGA-D5-6930-01 17 4685902 4685902 C T TM4SF5 Silent p.N121N 0.25 TCGA-D5-6930-01 17 47119662 47119662 G A IGF2BP1 Missense_Mutation p.E334K 0.29 tolerated(0.07) benign(0.243) TCGA-D5-6930-01 17 47376256 47376256 C T ZNF652 Missense_Mutation p.G447D 0.28 deleterious(0) benign(0.396) TCGA-D5-6930-01 17 47389292 47389292 G A ZNF652 Silent p.C387C 0.26 TCGA-D5-6930-01 17 47895184 47895184 G T KAT7 Missense_Mutation p.E322D 0.17 deleterious(0.02) benign(0.027) TCGA-D5-6930-01 17 48149412 48149412 C T ITGA3 Missense_Mutation p.A341V 0.10 deleterious(0) possibly_damaging(0.894) TCGA-D5-6930-01 17 48703920 48703920 C - CACNA1G Frame_Shift_Del p.E2317Rfs*47 0.22 TCGA-D5-6930-01 17 5322820 5322820 G A NUP88 Missense_Mutation p.P51S 0.32 tolerated_low_confidence(0.29) benign(0.032) TCGA-D5-6930-01 17 55183946 55183946 G A AKAP1 Missense_Mutation p.R374H 0.19 tolerated(0.46) benign(0.003) TCGA-D5-6930-01 17 56389844 56389844 G T BZRAP1 Missense_Mutation p.P780T 0.26 tolerated(0.06) probably_damaging(0.978) TCGA-D5-6930-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.22 TCGA-D5-6930-01 17 56438206 56438206 C T RNF43 Missense_Mutation p.G263R 0.17 tolerated(0.09) benign(0.008) TCGA-D5-6930-01 17 65051281 65051281 C A CACNG1 Missense_Mutation p.L123I 0.24 tolerated(1) benign(0.002) TCGA-D5-6930-01 17 6544530 6544530 G A TXNDC17 Missense_Mutation p.C43Y 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 17 66267065 66267065 G A SLC16A6 Silent p.V412V 0.10 TCGA-D5-6930-01 17 66270124 66270124 G A SLC16A6 Missense_Mutation p.A107V 0.15 tolerated(0.27) benign(0.006) TCGA-D5-6930-01 17 6719273 6719273 C T TEKT1 Missense_Mutation p.R122H 0.11 deleterious(0) probably_damaging(0.978) TCGA-D5-6930-01 17 6979154 6979154 T G CLEC10A Missense_Mutation p.S191R 0.20 deleterious(0.02) benign(0.157) TCGA-D5-6930-01 17 70117872 70117873 GT - SOX9 Frame_Shift_Del p.W115Gfs*136 0.11 TCGA-D5-6930-01 17 71165744 71165744 C A SSTR2 Missense_Mutation p.L96M 0.21 deleterious(0) probably_damaging(0.996) TCGA-D5-6930-01 17 7256883 7256883 G A KCTD11 Missense_Mutation p.G208S 0.15 deleterious(0.01) benign(0.003) TCGA-D5-6930-01 17 73102014 73102014 T C SLC16A5 Silent p.N468N 0.21 TCGA-D5-6930-01 17 73259484 73259484 G A MRPS7 Missense_Mutation p.A135T 0.21 tolerated(0.16) benign(0.078) TCGA-D5-6930-01 17 7329688 7329688 C T C17orf74 Silent p.R126R 0.36 TCGA-D5-6930-01 17 73746239 73746239 C - ITGB4 Frame_Shift_Del p.P1123Lfs*37 0.30 TCGA-D5-6930-01 17 73843671 73843671 G - WBP2 Frame_Shift_Del p.M185* 0.23 TCGA-D5-6930-01 17 7385571 7385571 C T SLC35G6 Missense_Mutation p.R90C 0.15 deleterious(0.01) benign(0.031) TCGA-D5-6930-01 17 7401440 7401440 G A POLR2A Missense_Mutation p.A416T 0.13 probably_damaging(0.999) TCGA-D5-6930-01 17 74533482 74533482 C A CYGB Missense_Mutation p.R48M 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-D5-6930-01 17 7492956 7492956 G A SOX15 Silent p.S13S 0.22 TCGA-D5-6930-01 17 76118721 76118721 G A TMC6 Missense_Mutation p.R398C 0.15 deleterious(0) probably_damaging(0.95) TCGA-D5-6930-01 17 76490799 76490799 C T DNAH17 Missense_Mutation p.R2035Q 0.19 probably_damaging(0.987) TCGA-D5-6930-01 17 76823371 76823371 G A USP36 Silent p.Y215Y 0.14 TCGA-D5-6930-01 17 7748975 7748975 C - KDM6B Frame_Shift_Del p.P36Lfs*162 0.12 TCGA-D5-6930-01 17 78280073 78280074 GA - RNF213 Frame_Shift_Del p.K747Afs*16 0.20 TCGA-D5-6930-01 17 78324167 78324167 C T RNF213 Silent p.I3385I 0.23 TCGA-D5-6930-01 17 79170625 79170625 G A AZI1 Missense_Mutation p.A592V 0.11 tolerated(0.09) benign(0.018) TCGA-D5-6930-01 17 79425327 79425327 C T RP11-1055B8.7 Silent p.G1726G 0.29 TCGA-D5-6930-01 17 79974365 79974365 C T ASPSCR1 Missense_Mutation p.P550L 0.29 deleterious(0) probably_damaging(0.96) TCGA-D5-6930-01 17 80588819 80588820 - T WDR45B Frame_Shift_Ins p.P75Afs*13 0.17 TCGA-D5-6930-01 17 8221919 8221919 G A ARHGEF15 Missense_Mutation p.R604H 0.11 deleterious(0.02) probably_damaging(0.974) TCGA-D5-6930-01 17 9559771 9559771 G A USP43 Missense_Mutation p.A186T 0.27 deleterious(0) probably_damaging(0.972) TCGA-D5-6930-01 17 9792822 9792822 G A GLP2R Missense_Mutation p.E488K 0.12 tolerated(0.64) benign(0.002) TCGA-D5-6930-01 18 12254943 12254943 C T CIDEA Intron 0.20 TCGA-D5-6930-01 18 12325115 12325115 C T TUBB6 Silent p.G109G 0.14 TCGA-D5-6930-01 18 13645400 13645400 C T LDLRAD4 Missense_Mutation p.A222V 0.37 tolerated_low_confidence(0.06) benign(0.04) TCGA-D5-6930-01 18 13681751 13681751 T - FAM210A Frame_Shift_Del p.K109Rfs*29 0.22 TCGA-D5-6930-01 18 22807406 22807406 C T ZNF521 Missense_Mutation p.R159H 0.23 deleterious(0) probably_damaging(0.996) TCGA-D5-6930-01 18 24722825 24722825 T G CHST9 5'UTR 0.28 TCGA-D5-6930-01 18 33257666 33257666 C T GALNT1 Silent p.R142R 0.30 TCGA-D5-6930-01 18 3879898 3879898 G A DLGAP1 Silent p.C57C 0.18 TCGA-D5-6930-01 18 42532045 42532045 C T SETBP1 Missense_Mutation p.R914W 0.23 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 18 43796349 43796349 T A C18orf25 Missense_Mutation p.V168D 0.10 probably_damaging(0.996) TCGA-D5-6930-01 18 44181306 44181306 G A LOXHD1 Silent p.G336G 0.28 TCGA-D5-6930-01 18 46476363 46476363 C T SMAD7 Silent p.A144A 0.25 TCGA-D5-6930-01 18 50918193 50918193 C T DCC Missense_Mutation p.T875M 0.17 deleterious(0.01) benign(0.284) TCGA-D5-6930-01 18 52895520 52895520 G - TCF4 Frame_Shift_Del p.P753Lfs*32 0.20 TCGA-D5-6930-01 18 5291921 5291921 C T ZBTB14 Missense_Mutation p.A96T 0.20 deleterious(0.02) benign(0.391) TCGA-D5-6930-01 18 5395107 5395107 G A EPB41L3 Nonsense_Mutation p.R1038* 0.21 TCGA-D5-6930-01 18 54385264 54385264 A - WDR7 Frame_Shift_Del p.K551Nfs*3 0.17 TCGA-D5-6930-01 18 5489161 5489161 C T EPB41L3 Missense_Mutation p.D8N 0.44 deleterious(0.03) possibly_damaging(0.881) TCGA-D5-6930-01 18 55334351 55334351 G A ATP8B1 Missense_Mutation p.T753I 0.18 deleterious(0.04) benign(0.241) TCGA-D5-6930-01 18 65179272 65179272 G T DSEL Silent p.T868T 0.26 TCGA-D5-6930-01 18 65179858 65179858 T G DSEL Missense_Mutation p.Q673P 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-D5-6930-01 18 67996842 67996842 C T SOCS6 3'UTR 0.11 TCGA-D5-6930-01 18 6978289 6978289 C T LAMA1 Silent p.L2032L 0.19 TCGA-D5-6930-01 18 7046313 7046313 G A LAMA1 Silent p.G274G 0.13 TCGA-D5-6930-01 18 7049077 7049077 G A LAMA1 Silent p.R256R 0.24 TCGA-D5-6930-01 18 72223647 72223647 G A CNDP1 Silent p.A33A 0.28 TCGA-D5-6930-01 18 74606991 74606991 C T ZNF236 Silent p.G478G 0.30 TCGA-D5-6930-01 18 74692283 74692283 G T RP11-862L9.3 5'Flank 0.19 TCGA-D5-6930-01 18 77488916 77488916 G A CTDP1 Silent p.P809P 0.38 TCGA-D5-6930-01 18 8394505 8394505 G A PTPRM Missense_Mutation p.A1414T 0.18 deleterious(0) possibly_damaging(0.778) TCGA-D5-6930-01 19 1005195 1005195 C T GRIN3B Silent p.P565P 0.24 TCGA-D5-6930-01 19 10463141 10463141 G A TYK2 Missense_Mutation p.T1096M 0.30 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 19 10625483 10625483 C T S1PR5 Missense_Mutation p.A69T 0.20 tolerated(0.64) probably_damaging(0.986) TCGA-D5-6930-01 19 10745894 10745894 C T SLC44A2 Silent p.L371L 0.19 TCGA-D5-6930-01 19 10960973 10960973 C - C19orf38 Frame_Shift_Del p.P25Rfs*46 0.25 TCGA-D5-6930-01 19 11032489 11032489 G A CARM1 3'UTR 0.24 TCGA-D5-6930-01 19 1116025 1116025 C T SBNO2 Missense_Mutation p.R627Q 0.33 tolerated(0.07) probably_damaging(0.946) TCGA-D5-6930-01 19 11280610 11280610 G A KANK2 Silent p.D823D 0.26 TCGA-D5-6930-01 19 12492104 12492104 C T CTD-3105H18.14 3'UTR 0.42 TCGA-D5-6930-01 19 12542023 12542023 G A ZNF443 Silent p.S321S 0.11 TCGA-D5-6930-01 19 12738674 12738674 C T ZNF791 Missense_Mutation p.R111C 0.11 tolerated(0.26) possibly_damaging(0.6) TCGA-D5-6930-01 19 14029962 14029962 G A CC2D1A Missense_Mutation p.R390Q 0.30 deleterious(0.02) possibly_damaging(0.691) TCGA-D5-6930-01 19 15285040 15285040 C A NOTCH3 Silent p.L1525L 0.25 TCGA-D5-6930-01 19 15484004 15484004 G A AKAP8 Silent p.C173C 0.30 TCGA-D5-6930-01 19 1615437 1615437 G A TCF3 Missense_Mutation p.R557W 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 19 16436769 16436769 C T KLF2 Missense_Mutation p.T273I 0.37 deleterious(0) unknown(0) TCGA-D5-6930-01 19 16614071 16614071 G A C19orf44 Missense_Mutation p.A319T 0.21 tolerated(1) benign(0.019) TCGA-D5-6930-01 19 16757973 16757973 A - SMIM7 3'UTR 0.27 TCGA-D5-6930-01 19 16963880 16963880 A - SIN3B Frame_Shift_Del p.M286* 0.18 TCGA-D5-6930-01 19 17597525 17597525 G A SLC27A1 Silent p.A107A 0.11 TCGA-D5-6930-01 19 18004634 18004634 C - SLC5A5 Frame_Shift_Del p.C629Vfs*75 0.14 TCGA-D5-6930-01 19 18543839 18543839 G A SSBP4 Missense_Mutation p.A300T 0.19 tolerated_low_confidence(0.16) benign(0.027) TCGA-D5-6930-01 19 18547215 18547215 C T ISYNA1 Silent p.T228T 0.38 TCGA-D5-6930-01 19 18882274 18882274 G A CRTC1 Missense_Mutation p.R464H 0.14 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 19 18897443 18897443 C T COMP Missense_Mutation p.D385N 0.23 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 19 19120809 19120809 A G SUGP2 Silent p.N731N 0.24 TCGA-D5-6930-01 19 19381059 19381059 G A TM6SF2 Silent p.H108H 0.22 TCGA-D5-6930-01 19 19416883 19416883 C T SUGP1 Missense_Mutation p.A105T 0.29 tolerated(0.46) benign(0.003) TCGA-D5-6930-01 19 2078456 2078456 G A MOB3A Missense_Mutation p.A35V 0.32 deleterious(0.04) probably_damaging(1) TCGA-D5-6930-01 19 21561352 21561352 A T ZNF738 3'UTR 0.07 TCGA-D5-6930-01 19 22155323 22155323 C T ZNF208 Missense_Mutation p.C838Y 0.21 deleterious(0.02) unknown(0) TCGA-D5-6930-01 19 3148655 3148655 C T GNA15 Missense_Mutation p.S71L 0.31 deleterious(0.02) possibly_damaging(0.847) TCGA-D5-6930-01 19 31768512 31768512 C A TSHZ3 Missense_Mutation p.M729I 0.22 deleterious(0) probably_damaging(0.958) TCGA-D5-6930-01 19 33353120 33353120 T - SLC7A9 Frame_Shift_Del p.N203Tfs*61 0.12 TCGA-D5-6930-01 19 33628609 33628609 C T WDR88 Silent p.H101H 0.20 TCGA-D5-6930-01 19 34710328 34710328 C T LSM14A Missense_Mutation p.R272C 0.12 tolerated(0.06) benign(0.329) TCGA-D5-6930-01 19 35827144 35827144 C T CD22 Silent p.F206F 0.19 TCGA-D5-6930-01 19 36234772 36234772 C T U2AF1L4 Missense_Mutation p.C114Y 0.20 deleterious(0) benign(0.388) TCGA-D5-6930-01 19 36940363 36940363 T G ZNF566 Missense_Mutation p.K259T 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-D5-6930-01 19 37210982 37210982 T C ZNF567 Silent p.S421S 0.28 TCGA-D5-6930-01 19 3728382 3728382 G A TJP3 Intron 0.26 TCGA-D5-6930-01 19 37853630 37853630 G A HKR1 Silent p.T311T 0.34 TCGA-D5-6930-01 19 3816720 3816720 C T ZFR2 Silent p.T685T 0.13 TCGA-D5-6930-01 19 38202554 38202554 C T ZNF607 5'UTR 0.09 TCGA-D5-6930-01 19 38609951 38609951 C A SIPA1L3 Missense_Mutation p.A766D 0.26 deleterious(0) probably_damaging(0.993) TCGA-D5-6930-01 19 38631940 38631940 C A SIPA1L3 Missense_Mutation p.P1087H 0.25 deleterious(0) possibly_damaging(0.827) TCGA-D5-6930-01 19 38874031 38874032 - C PSMD8 3'UTR 0.21 TCGA-D5-6930-01 19 3908297 3908297 C T ATCAY Silent p.I192I 0.23 TCGA-D5-6930-01 19 39303620 39303620 G T LGALS4 5'UTR 0.30 TCGA-D5-6930-01 19 3976696 3976696 C T EEF2 Silent p.Q811Q 0.33 TCGA-D5-6930-01 19 3981982 3981982 C T EEF2 Missense_Mutation p.R287H 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-D5-6930-01 19 40430546 40430546 G A FCGBP Missense_Mutation p.A466V 0.50 possibly_damaging(0.727) TCGA-D5-6930-01 19 4047691 4047691 T - ZBTB7A 3'UTR 0.16 TCGA-D5-6930-01 19 40743924 40743924 C T AKT2 Silent p.S261S 0.30 TCGA-D5-6930-01 19 41074085 41074085 C T SPTBN4 Missense_Mutation p.R2285C 0.25 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-D5-6930-01 19 41596423 41596423 G A CYP2A13 Missense_Mutation p.R203H 0.17 tolerated(0.22) possibly_damaging(0.747) TCGA-D5-6930-01 19 4174696 4174696 G A SIRT6 Missense_Mutation p.A329V 0.08 tolerated_low_confidence(0.32) benign(0.001) TCGA-D5-6930-01 19 41822577 41822577 G A CCDC97 Missense_Mutation p.R112H 0.16 tolerated(0.41) benign(0.004) TCGA-D5-6930-01 19 41825509 41825509 G A CCDC97 Missense_Mutation p.R178Q 0.26 tolerated(0.07) probably_damaging(0.996) TCGA-D5-6930-01 19 4186357 4186357 T C ANKRD24 5'UTR 0.17 TCGA-D5-6930-01 19 41888929 41888929 C T TMEM91 Intron 0.21 TCGA-D5-6930-01 19 42090699 42090699 G A CEACAM21 Splice_Site p.X234_splice 0.15 TCGA-D5-6930-01 19 42595679 42595679 C T POU2F2 3'UTR 0.11 TCGA-D5-6930-01 19 43514138 43514138 A G PSG11 3'UTR 0.18 TCGA-D5-6930-01 19 4445301 4445301 T A UBXN6 3'UTR 0.33 TCGA-D5-6930-01 19 44590834 44590834 C T ZNF284 Silent p.C401C 0.13 TCGA-D5-6930-01 19 4512786 4512786 C G PLIN4 Missense_Mutation p.V382L 0.19 tolerated(1) benign(0.001) TCGA-D5-6930-01 19 45730947 45730947 G A EXOC3L2 Missense_Mutation p.A126V 0.15 deleterious(0.04) benign(0.023) TCGA-D5-6930-01 19 45735104 45735104 C T EXOC3L2 Missense_Mutation p.A3T 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-D5-6930-01 19 45849818 45849819 - G KLC3 Frame_Shift_Ins p.A93Gfs*74 0.28 TCGA-D5-6930-01 19 45912505 45912508 AAGA - CD3EAP Frame_Shift_Del p.K428Rfs*6 0.19 TCGA-D5-6930-01 19 46124857 46124857 C A EML2 Missense_Mutation p.D495Y 0.19 deleterious(0) possibly_damaging(0.632) TCGA-D5-6930-01 19 46281005 46281005 C T DMPK Missense_Mutation p.A278T 0.19 deleterious(0.04) possibly_damaging(0.731) TCGA-D5-6930-01 19 46313967 46313967 T C RSPH6A Missense_Mutation p.D261G 0.18 deleterious(0) possibly_damaging(0.862) TCGA-D5-6930-01 19 46521625 46521625 C T CCDC61 Nonsense_Mutation p.R507* 0.30 TCGA-D5-6930-01 19 46915142 46915142 G T CCDC8 Missense_Mutation p.A309D 0.20 benign(0.009) TCGA-D5-6930-01 19 47597320 47597320 G A ZC3H4 Silent p.S133S 0.12 TCGA-D5-6930-01 19 47935624 47935624 G A SLC8A2 Missense_Mutation p.T730M 0.24 deleterious(0) probably_damaging(0.977) TCGA-D5-6930-01 19 48197708 48197708 C - GLTSCR1 Frame_Shift_Del p.P875Qfs*72 0.22 TCGA-D5-6930-01 19 48972773 48972773 C T CYTH2 Silent p.D3D 0.32 TCGA-D5-6930-01 19 49001626 49001626 G A LMTK3 Silent p.V929V 0.29 TCGA-D5-6930-01 19 49174170 49174170 C T NTN5 Missense_Mutation p.R25H 0.26 tolerated(0.16) benign(0.002) TCGA-D5-6930-01 19 49552133 49552133 G - CGB8 5'UTR 0.32 TCGA-D5-6930-01 19 49658434 49658434 G A HRC Missense_Mutation p.L21F 0.38 deleterious(0.03) probably_damaging(0.969) TCGA-D5-6930-01 19 49994192 49994194 TTG - RPL13A Intron 0.27 TCGA-D5-6930-01 19 50148367 50148367 G A SCAF1 Silent p.T28T 0.18 TCGA-D5-6930-01 19 50193738 50193738 G A ADM5 Silent p.P150P 0.15 TCGA-D5-6930-01 19 50510883 50510883 G A VRK3 Nonsense_Mutation p.R164* 0.20 TCGA-D5-6930-01 19 50796858 50796858 C T MYH14 Missense_Mutation p.R1795C 0.14 deleterious(0) probably_damaging(0.988) TCGA-D5-6930-01 19 50905061 50905061 C - POLD1 Frame_Shift_Del p.P116Hfs*53 0.16 TCGA-D5-6930-01 19 50970941 50970941 G A FAM71E1 Missense_Mutation p.R213W 0.33 deleterious(0) probably_damaging(0.993) TCGA-D5-6930-01 19 5131245 5131245 C A KDM4B Missense_Mutation p.P492T 0.18 possibly_damaging(0.641) TCGA-D5-6930-01 19 51586039 51586039 G - KLK14 5'UTR 0.16 TCGA-D5-6930-01 19 51628472 51628472 C T SIGLEC9 Missense_Mutation p.R81W 0.33 deleterious(0.01) benign(0.32) TCGA-D5-6930-01 19 51960986 51960986 G A SIGLEC8 Silent p.T154T 0.11 TCGA-D5-6930-01 19 5218451 5218451 C T PTPRS Missense_Mutation p.R1343H 0.18 deleterious(0) probably_damaging(0.932) TCGA-D5-6930-01 19 53058476 53058476 C T ZNF808 Silent p.G769G 0.11 TCGA-D5-6930-01 19 53302315 53302315 G T ZNF28 3'UTR 0.26 TCGA-D5-6930-01 19 53454261 53454262 TC - ZNF816 Frame_Shift_Del p.E256Ifs*2 0.19 TCGA-D5-6930-01 19 53793269 53793269 C T BIRC8 Missense_Mutation p.R120Q 0.19 tolerated(0.55) benign(0.01) TCGA-D5-6930-01 19 53794205 53794205 G A BIRC8 5'UTR 0.13 TCGA-D5-6930-01 19 5455704 5455704 C T ZNRF4 Missense_Mutation p.R68W 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.638) TCGA-D5-6930-01 19 54697319 54697319 C T TSEN34 3'UTR 0.18 TCGA-D5-6930-01 19 55331397 55331397 C T KIR3DL1 Silent p.C195C 0.24 TCGA-D5-6930-01 19 55872436 55872436 G A FAM71E2 Silent p.G230G 0.19 TCGA-D5-6930-01 19 56103966 56103966 G A FIZ1 Silent p.C447C 0.10 TCGA-D5-6930-01 19 5623236 5623236 G T SAFB Missense_Mutation p.G7V 0.27 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-D5-6930-01 19 56370248 56370249 - T NLRP4 Frame_Shift_Ins p.L499Ffs*11 0.22 TCGA-D5-6930-01 19 57176090 57176090 C T ZNF835 Silent p.T159T 0.11 TCGA-D5-6930-01 19 57335882 57335882 T C PEG3 Missense_Mutation p.R48G 0.22 deleterious(0) benign(0.085) TCGA-D5-6930-01 19 57646387 57646387 T - ZIM3 Frame_Shift_Del p.T440Pfs*98 0.16 TCGA-D5-6930-01 19 57835175 57835175 G A ZNF543 Silent p.L48L 0.28 TCGA-D5-6930-01 19 58352986 58352986 G A ZNF587B Missense_Mutation p.R315H 0.39 tolerated(0.21) benign(0.002) TCGA-D5-6930-01 19 58563931 58563931 C - ZSCAN1 Frame_Shift_Del p.Q181Sfs*29 0.18 TCGA-D5-6930-01 19 59021349 59021349 T C SLC27A5 Missense_Mutation p.T308A 0.17 deleterious(0.01) benign(0.422) TCGA-D5-6930-01 19 6495957 6495957 C T TUBB4A Missense_Mutation p.A185T 0.24 deleterious_low_confidence(0.04) benign(0.244) TCGA-D5-6930-01 19 6710822 6710822 C T C3 Missense_Mutation p.R505H 0.12 deleterious(0.03) possibly_damaging(0.846) TCGA-D5-6930-01 19 7142951 7142951 C T INSR Silent p.S806S 0.16 TCGA-D5-6930-01 19 7267471 7267471 G A INSR Silent p.N179N 0.23 TCGA-D5-6930-01 19 7505030 7505030 G A ARHGEF18 Silent p.A68A 0.26 TCGA-D5-6930-01 19 7550830 7550830 C T PEX11G Missense_Mutation p.R48H 0.19 deleterious(0.02) probably_damaging(0.953) TCGA-D5-6930-01 19 7975915 7975915 C T MAP2K7 Silent p.R242R 0.11 TCGA-D5-6930-01 19 8161886 8161886 G A FBN3 Silent p.V1764V 0.14 TCGA-D5-6930-01 19 8174600 8174600 G A FBN3 Silent p.N1457N 0.25 TCGA-D5-6930-01 19 8528540 8528540 T C HNRNPM Silent p.S136S 0.18 TCGA-D5-6930-01 19 9958748 9958748 C T PIN1 Missense_Mutation p.S105F 0.24 deleterious(0) possibly_damaging(0.504) TCGA-D5-6930-01 1 100608738 100608738 C T TRMT13 Nonsense_Mutation p.Q239* 0.17 TCGA-D5-6930-01 1 101704964 101704964 C T S1PR1 Missense_Mutation p.R142C 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 1 101705754 101705754 A - S1PR1 3'UTR 0.38 TCGA-D5-6930-01 1 10190571 10190571 G A UBE4B Missense_Mutation p.R570Q 0.21 tolerated(0.27) benign(0.01) TCGA-D5-6930-01 1 10511634 10511636 CTT - CORT In_Frame_Del p.F101del 0.31 TCGA-D5-6930-01 1 10709424 10709424 G A CASZ1 Missense_Mutation p.A984V 0.17 tolerated_low_confidence(0.36) benign(0.008) TCGA-D5-6930-01 1 108700183 108700183 T - SLC25A24 Frame_Shift_Del p.K190Nfs*29 0.23 TCGA-D5-6930-01 1 109808382 109808382 G A CELSR2 Missense_Mutation p.S1918N 0.23 tolerated(0.05) benign(0.046) TCGA-D5-6930-01 1 109810515 109810515 C T CELSR2 Missense_Mutation p.R2051C 0.22 deleterious(0.04) probably_damaging(0.93) TCGA-D5-6930-01 1 11008274 11008275 - C C1orf127 Frame_Shift_Ins p.H640Afs*47 0.26 TCGA-D5-6930-01 1 11008315 11008315 C T C1orf127 Missense_Mutation p.R626H 0.19 tolerated(0.31) benign(0.002) TCGA-D5-6930-01 1 110086401 110086401 C T GPR61 Missense_Mutation p.R253W 0.20 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 1 110168374 110168374 C T AMPD2 Missense_Mutation p.R159W 0.20 deleterious(0) possibly_damaging(0.902) TCGA-D5-6930-01 1 110170413 110170413 G A AMPD2 Missense_Mutation p.R377H 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-D5-6930-01 1 110171331 110171331 C T AMPD2 Missense_Mutation p.R546C 0.22 deleterious(0.03) probably_damaging(1) TCGA-D5-6930-01 1 110171400 110171400 C T AMPD2 Missense_Mutation p.R569C 0.21 deleterious(0.01) probably_damaging(0.97) TCGA-D5-6930-01 1 111996969 111996970 - GT ATP5F1 Frame_Shift_Ins p.T74* 0.21 TCGA-D5-6930-01 1 114224862 114224862 C T MAGI3 Intron 0.22 TCGA-D5-6930-01 1 115005834 115005834 C T TRIM33 Missense_Mutation p.R272H 0.15 deleterious(0) benign(0.167) TCGA-D5-6930-01 1 115147641 115147641 G A DENND2C Silent p.G523G 0.19 TCGA-D5-6930-01 1 116383146 116383146 T - NHLH2 5'UTR 0.13 TCGA-D5-6930-01 1 116936213 116936213 G A ATP1A1 Missense_Mutation p.A510T 0.25 deleterious(0) probably_damaging(0.957) TCGA-D5-6930-01 1 117620654 117620654 G A TTF2 Missense_Mutation p.A564T 0.11 tolerated(0.12) benign(0.21) TCGA-D5-6930-01 1 117635474 117635474 G A TTF2 Missense_Mutation p.G976D 0.30 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 1 1178489 1178489 G A FAM132A Silent p.D228D 0.20 TCGA-D5-6930-01 1 12170212 12170212 G T TNFRSF8 Silent p.T209T 0.24 TCGA-D5-6930-01 1 12726318 12726318 G A AADACL4 Missense_Mutation p.A266T 0.23 tolerated(0.23) possibly_damaging(0.595) TCGA-D5-6930-01 1 12726598 12726598 G A AADACL4 Missense_Mutation p.R359H 0.17 deleterious(0.03) possibly_damaging(0.597) TCGA-D5-6930-01 1 12855762 12855762 G A PRAMEF1 Missense_Mutation p.A348T 0.21 deleterious(0) benign(0.273) TCGA-D5-6930-01 1 13718564 13718564 C A PRAMEF17 Missense_Mutation p.L343M 0.48 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 1 146656153 146656153 G T FMO5 3'Flank 0.22 TCGA-D5-6930-01 1 147410832 147410832 G A GPR89B Missense_Mutation p.R36H 0.11 tolerated(0.77) benign(0.004) TCGA-D5-6930-01 1 149883388 149883388 C T SV2A Missense_Mutation p.G256D 0.12 deleterious(0.04) possibly_damaging(0.864) TCGA-D5-6930-01 1 149895562 149895562 G - SF3B4 Frame_Shift_Del p.H383Mfs*75 0.27 TCGA-D5-6930-01 1 150525993 150525993 C T ADAMTSL4 Missense_Mutation p.R176W 0.31 deleterious(0) possibly_damaging(0.634) TCGA-D5-6930-01 1 150917472 150917472 G A SETDB1 Missense_Mutation p.R343H 0.14 deleterious(0) benign(0.299) TCGA-D5-6930-01 1 151111199 151111199 G A SEMA6C Silent p.C121C 0.10 TCGA-D5-6930-01 1 151140772 151140772 C A SCNM1 Missense_Mutation p.P184H 0.15 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 1 151491681 151491681 G A CGN Missense_Mutation p.R229H 0.17 tolerated(0.22) benign(0.006) TCGA-D5-6930-01 1 151502583 151502583 C T CGN Missense_Mutation p.R769W 0.28 deleterious(0) probably_damaging(0.99) TCGA-D5-6930-01 1 151746854 151746854 T C TDRKH Intron 0.11 TCGA-D5-6930-01 1 151773602 151773603 - A LINGO4 Frame_Shift_Ins p.L527Sfs*3 0.23 TCGA-D5-6930-01 1 152282523 152282523 C T FLG Silent p.S1613S 0.27 TCGA-D5-6930-01 1 152785009 152785009 C T LCE1B Silent p.C29C 0.15 TCGA-D5-6930-01 1 154302887 154302887 C T ATP8B2 Missense_Mutation p.A49V 0.21 tolerated(1) benign(0.001) TCGA-D5-6930-01 1 154304153 154304153 C T ATP8B2 Missense_Mutation p.A179V 0.20 tolerated(0.05) possibly_damaging(0.551) TCGA-D5-6930-01 1 154315390 154315390 G A ATP8B2 Missense_Mutation p.R502H 0.21 deleterious(0.01) possibly_damaging(0.859) TCGA-D5-6930-01 1 155161066 155161066 G - MUC1 Frame_Shift_Del p.P154Qfs*170 0.45 TCGA-D5-6930-01 1 155217617 155217617 G - FAM189B Frame_Shift_Del p.H655Tfs*22 0.21 TCGA-D5-6930-01 1 155686900 155686900 G A DAP3 Missense_Mutation p.R50H 0.16 tolerated(0.11) benign(0.028) TCGA-D5-6930-01 1 156220446 156220446 C T SMG5 Missense_Mutation p.A995T 0.25 tolerated(0.2) possibly_damaging(0.709) TCGA-D5-6930-01 1 156703182 156703182 G A RRNAD1 Missense_Mutation p.R169H 0.36 deleterious(0) probably_damaging(0.992) TCGA-D5-6930-01 1 156882072 156882072 C T PEAR1 Missense_Mutation p.A662V 0.27 tolerated(0.08) benign(0.119) TCGA-D5-6930-01 1 156901818 156901818 C T LRRC71 Silent p.I480I 0.30 TCGA-D5-6930-01 1 157803223 157803223 G A CD5L Silent p.G266G 0.24 TCGA-D5-6930-01 1 157809182 157809182 C A CD5L Missense_Mutation p.G16V 0.32 tolerated(0.08) benign(0.03) TCGA-D5-6930-01 1 158326182 158326182 A C CD1E Intron 0.32 TCGA-D5-6930-01 1 158517779 158517779 G T OR6Y1 Silent p.T39T 0.21 TCGA-D5-6930-01 1 158617458 158617458 G A SPTA1 Missense_Mutation p.A1256V 0.09 deleterious(0.01) probably_damaging(1) TCGA-D5-6930-01 1 158647547 158647547 A C SPTA1 Missense_Mutation p.V297G 0.10 tolerated(0.15) possibly_damaging(0.597) TCGA-D5-6930-01 1 160141214 160141214 G - ATP1A4 Frame_Shift_Del p.E557Nfs*4 0.09 TCGA-D5-6930-01 1 160147260 160147260 G A ATP1A4 Intron 0.20 TCGA-D5-6930-01 1 16057117 16057117 C - PLEKHM2 Frame_Shift_Del p.E769Rfs*51 0.25 TCGA-D5-6930-01 1 161184004 161184004 C - NDUFS2 3'UTR 0.15 TCGA-D5-6930-01 1 161332448 161332448 T - SDHC 3'UTR 0.16 TCGA-D5-6930-01 1 161483684 161483684 G A FCGR2A Splice_Site p.X248_splice 0.13 TCGA-D5-6930-01 1 161487824 161487824 C A FCGR2A Missense_Mutation p.D280E 0.09 tolerated_low_confidence(0.49) probably_damaging(0.935) TCGA-D5-6930-01 1 161495453 161495453 C T HSPA6 Silent p.D335D 0.20 TCGA-D5-6930-01 1 161496595 161496595 G A HSPA6 3'UTR 0.11 TCGA-D5-6930-01 1 16332443 16332443 G A C1orf64 Missense_Mutation p.V38I 0.31 tolerated(1) benign(0.005) TCGA-D5-6930-01 1 16525126 16525126 G A ARHGEF19 Nonsense_Mutation p.R789* 0.29 TCGA-D5-6930-01 1 165664526 165664526 C T ALDH9A1 Missense_Mutation p.R97H 0.27 deleterious(0) possibly_damaging(0.716) TCGA-D5-6930-01 1 166135325 166135325 C T FAM78B Missense_Mutation p.R54H 0.21 deleterious(0.03) possibly_damaging(0.799) TCGA-D5-6930-01 1 167666919 167666919 C T RCSD1 Missense_Mutation p.P353L 0.15 deleterious(0) possibly_damaging(0.559) TCGA-D5-6930-01 1 168044790 168044790 C T DCAF6 3'UTR 0.15 TCGA-D5-6930-01 1 1688162 1688163 - C NADK Intron 0.21 TCGA-D5-6930-01 1 171121093 171121093 G A FMO6P Missense_Mutation p.R291H 0.26 tolerated(0.57) benign(0.219) TCGA-D5-6930-01 1 171154855 171154855 G A FMO2 Translation_Start_Site p.M1? 0.17 deleterious(0) probably_damaging(0.991) TCGA-D5-6930-01 1 171621322 171621322 T C MYOC Missense_Mutation p.N144D 0.21 tolerated(0.38) benign(0.013) TCGA-D5-6930-01 1 17271962 17271962 G T CROCC Missense_Mutation p.R666I 0.12 probably_damaging(0.964) TCGA-D5-6930-01 1 175048658 175048658 C T TNN Missense_Mutation p.P200L 0.31 tolerated(0.77) benign(0.001) TCGA-D5-6930-01 1 175362998 175362998 G A TNR Missense_Mutation p.T425M 0.32 deleterious(0.02) possibly_damaging(0.804) TCGA-D5-6930-01 1 176734856 176734856 T A PAPPA2 Missense_Mutation p.D1402E 0.21 tolerated(1) benign(0.01) TCGA-D5-6930-01 1 17743046 17743046 G A RCC2 Missense_Mutation p.T319M 0.24 deleterious(0.04) probably_damaging(0.949) TCGA-D5-6930-01 1 180366718 180366718 G A ACBD6 Missense_Mutation p.A199V 0.10 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 1 181740487 181740487 G A CACNA1E Missense_Mutation p.R1647Q 0.21 tolerated(0.22) possibly_damaging(0.553) TCGA-D5-6930-01 1 182908370 182908370 T - SHCBP1L Frame_Shift_Del p.K339Nfs*5 0.19 TCGA-D5-6930-01 1 183090944 183090944 C T LAMC1 Missense_Mutation p.P693S 0.15 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 1 184772735 184772735 G A FAM129A Missense_Mutation p.A513V 0.14 deleterious(0.04) possibly_damaging(0.758) TCGA-D5-6930-01 1 1847966 1847966 G A CALML6 Silent p.T55T 0.09 TCGA-D5-6930-01 1 185703900 185703900 A - HMCN1 5'UTR 0.25 TCGA-D5-6930-01 1 186057856 186057856 A C HMCN1 Missense_Mutation p.K3232N 0.26 possibly_damaging(0.572) TCGA-D5-6930-01 1 186277882 186277882 G T PRG4 Missense_Mutation p.A1011S 0.25 unknown(0) TCGA-D5-6930-01 1 18811809 18811809 A - KLHDC7A 3'UTR 0.15 TCGA-D5-6930-01 1 19181051 19181051 C T TAS1R2 Missense_Mutation p.A305T 0.13 deleterious(0.01) probably_damaging(0.954) TCGA-D5-6930-01 1 192544929 192544929 G A RGS1 Missense_Mutation p.A3T 0.22 tolerated_low_confidence(0.06) benign(0.003) TCGA-D5-6930-01 1 192628691 192628691 A G RGS13 3'UTR 0.26 TCGA-D5-6930-01 1 193117012 193117013 - T CDC73 Frame_Shift_Ins p.A251Cfs*16 0.16 TCGA-D5-6930-01 1 19653801 19653801 C T PQLC2 Silent p.S233S 0.24 TCGA-D5-6930-01 1 196759338 196759338 G A CFHR3 Silent p.S259S 0.23 TCGA-D5-6930-01 1 197390290 197390290 C T CRB1 Silent p.G444G 0.13 TCGA-D5-6930-01 1 197390741 197390741 G A CRB1 Missense_Mutation p.A595T 0.16 tolerated(0.52) benign(0.052) TCGA-D5-6930-01 1 198225610 198225610 A - NEK7 Intron 0.24 TCGA-D5-6930-01 1 198492626 198492626 A G ATP6V1G3 Silent p.L84L 0.23 TCGA-D5-6930-01 1 200378558 200378559 - G ZNF281 Frame_Shift_Ins p.P93Sfs*34 0.20 TCGA-D5-6930-01 1 20063946 20063946 G A TMCO4 Nonsense_Mutation p.R395* 0.25 TCGA-D5-6930-01 1 200818181 200818181 C T CAMSAP2 Missense_Mutation p.R762C 0.11 deleterious(0) probably_damaging(0.996) TCGA-D5-6930-01 1 200956233 200956233 C T KIF21B Missense_Mutation p.A1169T 0.13 tolerated(0.37) benign(0.1) TCGA-D5-6930-01 1 201020188 201020189 GG A CACNA1S Frame_Shift_Del p.P1346* 0.22 TCGA-D5-6930-01 1 201028355 201028355 G - CACNA1S Frame_Shift_Del p.L1163Wfs*3 0.09 TCGA-D5-6930-01 1 201437675 201437675 G A PHLDA3 Silent p.G80G 0.13 TCGA-D5-6930-01 1 202245650 202245650 G A LGR6 Splice_Site p.X215_splice 0.24 TCGA-D5-6930-01 1 203013128 203013128 C T PPFIA4 Missense_Mutation p.R136C 0.35 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 1 204130509 204130509 G - REN Frame_Shift_Del p.P95Hfs*76 0.19 TCGA-D5-6930-01 1 204380009 204380009 C A PPP1R15B Missense_Mutation p.E177D 0.30 deleterious(0.03) possibly_damaging(0.761) TCGA-D5-6930-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.23 TCGA-D5-6930-01 1 205632321 205632321 A C SLC45A3 Missense_Mutation p.F200V 0.22 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 1 20649921 20649921 G A VWA5B1 Missense_Mutation p.D347N 0.28 tolerated(0.08) possibly_damaging(0.548) TCGA-D5-6930-01 1 207107961 207107961 G T PIGR Nonsense_Mutation p.C503* 0.15 TCGA-D5-6930-01 1 20977135 20977135 C T PINK1 Missense_Mutation p.T566M 0.45 deleterious(0.02) benign(0.321) TCGA-D5-6930-01 1 209955413 209955413 C T TRAF3IP3 Nonsense_Mutation p.R526* 0.15 TCGA-D5-6930-01 1 211545918 211545918 C T TRAF5 Silent p.N516N 0.10 TCGA-D5-6930-01 1 213189049 213189049 G T ANGEL2 5'UTR 0.13 TCGA-D5-6930-01 1 218607494 218607494 C A TGFB2 Missense_Mutation p.A222E 0.24 tolerated(0.21) benign(0.089) TCGA-D5-6930-01 1 220316382 220316382 G A IARS2 Missense_Mutation p.R886Q 0.13 deleterious(0.04) probably_damaging(1) TCGA-D5-6930-01 1 22032619 22032619 C T USP48 Missense_Mutation p.R758K 0.24 tolerated(0.32) benign(0.109) TCGA-D5-6930-01 1 22181133 22181133 G A HSPG2 Nonsense_Mutation p.R2087* 0.21 TCGA-D5-6930-01 1 224002011 224002011 G A TP53BP2 Nonsense_Mutation p.R74* 0.39 TCGA-D5-6930-01 1 22447756 22447756 G T WNT4 Missense_Mutation p.A179D 0.14 tolerated(0.44) benign(0.222) TCGA-D5-6930-01 1 228109432 228109432 C T WNT9A Silent p.S295S 0.14 TCGA-D5-6930-01 1 228462046 228462046 G A OBSCN Missense_Mutation p.V2237M 0.31 possibly_damaging(0.647) TCGA-D5-6930-01 1 228474687 228474687 G A OBSCN Missense_Mutation p.R3593H 0.12 benign(0.145) TCGA-D5-6930-01 1 228506881 228506881 C T OBSCN Missense_Mutation p.R5767W 0.19 probably_damaging(0.999) TCGA-D5-6930-01 1 228528506 228528506 C T OBSCN Nonsense_Mutation p.Q6829* 0.18 TCGA-D5-6930-01 1 2303983 2303983 C T MORN1 Missense_Mutation p.A228T 0.19 tolerated(0.42) benign(0.007) TCGA-D5-6930-01 1 230459262 230459262 G A PGBD5 Missense_Mutation p.A426V 0.20 tolerated(0.37) possibly_damaging(0.884) TCGA-D5-6930-01 1 23240255 23240255 G A EPHB2 3'UTR 0.18 TCGA-D5-6930-01 1 234040850 234040850 C T SLC35F3 Silent p.G9G 0.19 TCGA-D5-6930-01 1 235613551 235613551 G A B3GALNT2 Silent p.C491C 0.29 TCGA-D5-6930-01 1 236645643 236645643 C T EDARADD Silent p.D114D 0.15 TCGA-D5-6930-01 1 236758907 236758907 G A HEATR1 Silent p.Y341Y 0.25 TCGA-D5-6930-01 1 236976121 236976122 - T MTR Frame_Shift_Ins p.D198* 0.18 TCGA-D5-6930-01 1 237789021 237789021 G A RYR2 Missense_Mutation p.R2028H 0.12 benign(0.097) TCGA-D5-6930-01 1 240656691 240656691 C T GREM2 Missense_Mutation p.A29T 0.36 tolerated(0.15) possibly_damaging(0.604) TCGA-D5-6930-01 1 24406603 24406603 G A MYOM3 Missense_Mutation p.A830V 0.20 tolerated(0.08) benign(0.073) TCGA-D5-6930-01 1 244218999 244218999 T - ZBTB18 3'UTR 0.16 TCGA-D5-6930-01 1 247201084 247201084 T G ZNF670 Missense_Mutation p.K279N 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-D5-6930-01 1 247901928 247901928 G A OR14K1 Silent p.Q4Q 0.14 TCGA-D5-6930-01 1 248128913 248128913 C T OR2AK2 Missense_Mutation p.P94S 0.20 deleterious(0) possibly_damaging(0.468) TCGA-D5-6930-01 1 248652119 248652119 A G OR2T5 Missense_Mutation p.Y77C 0.20 deleterious(0.02) benign(0.043) TCGA-D5-6930-01 1 249148223 249148223 G A ZNF692 Nonsense_Mutation p.Q361* 0.26 TCGA-D5-6930-01 1 2540788 2540788 G A MMEL1 Silent p.C175C 0.20 TCGA-D5-6930-01 1 26691599 26691599 G - ZNF683 Frame_Shift_Del p.C147Afs*91 0.20 TCGA-D5-6930-01 1 28208516 28208516 G A THEMIS2 Silent p.L227L 0.32 TCGA-D5-6930-01 1 29069683 29069683 C T YTHDF2 Nonsense_Mutation p.Q301* 0.21 TCGA-D5-6930-01 1 29475685 29475685 C T SRSF4 Missense_Mutation p.R241Q 0.28 tolerated(0.08) benign(0.238) TCGA-D5-6930-01 1 29630461 29630461 G A PTPRU Silent p.T867T 0.26 TCGA-D5-6930-01 1 29647267 29647267 G A PTPRU Missense_Mutation p.R1263Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 1 31418206 31418206 G A PUM1 Missense_Mutation p.A994V 0.31 deleterious(0) possibly_damaging(0.656) TCGA-D5-6930-01 1 31454166 31454166 C T PUM1 Silent p.P415P 0.13 TCGA-D5-6930-01 1 34128645 34128645 C T CSMD2 Missense_Mutation p.R1327H 0.33 deleterious(0.02) probably_damaging(0.969) TCGA-D5-6930-01 1 35250487 35250487 C T GJB3 Missense_Mutation p.R42C 0.17 deleterious(0) probably_damaging(0.982) TCGA-D5-6930-01 1 35480692 35480692 C T ZMYM6 Missense_Mutation p.S167N 0.22 tolerated(0.05) probably_damaging(0.999) TCGA-D5-6930-01 1 36282624 36282624 A - AGO4 Frame_Shift_Del p.K55Nfs*10 0.17 TCGA-D5-6930-01 1 36643530 36643530 C - MAP7D1 Frame_Shift_Del p.C481Afs*94 0.19 TCGA-D5-6930-01 1 37307503 37307503 G A GRIK3 Missense_Mutation p.T455M 0.13 tolerated(0.13) possibly_damaging(0.492) TCGA-D5-6930-01 1 37941324 37941324 C T ZC3H12A Missense_Mutation p.A76V 0.34 deleterious(0.02) possibly_damaging(0.718) TCGA-D5-6930-01 1 38005845 38005845 G A SNIP1 Missense_Mutation p.A280V 0.30 deleterious(0) benign(0.265) TCGA-D5-6930-01 1 39854158 39854158 G - MACF1 Frame_Shift_Del p.A3156Lfs*8 0.19 TCGA-D5-6930-01 1 39879356 39879356 C A KIAA0754 Missense_Mutation p.P1004Q 0.14 possibly_damaging(0.904) TCGA-D5-6930-01 1 43162398 43162398 G A YBX1 Missense_Mutation p.R147H 0.16 tolerated(0.56) benign(0.005) TCGA-D5-6930-01 1 44126010 44126010 G A KDM4A Missense_Mutation p.R119Q 0.14 deleterious(0) benign(0.001) TCGA-D5-6930-01 1 46660025 46660025 C T POMGNT1 Missense_Mutation p.R267H 0.15 benign(0.004) TCGA-D5-6930-01 1 46768922 46768922 C T LRRC41 Missense_Mutation p.A25T 0.32 deleterious(0) possibly_damaging(0.908) TCGA-D5-6930-01 1 46769009 46769009 C T LRRC41 5'UTR 0.27 TCGA-D5-6930-01 1 47883461 47883461 C - FOXE3 3'UTR 0.18 TCGA-D5-6930-01 1 52258068 52258068 G A NRD1 Missense_Mutation p.T1003M 0.12 tolerated(0.06) possibly_damaging(0.557) TCGA-D5-6930-01 1 52863405 52863405 C T ORC1 Silent p.P118P 0.16 TCGA-D5-6930-01 1 52940747 52940747 T - ZCCHC11 Frame_Shift_Del p.E829Sfs*28 0.19 TCGA-D5-6930-01 1 53153744 53153744 C T COA7 Missense_Mutation p.G115D 0.21 deleterious(0) probably_damaging(0.988) TCGA-D5-6930-01 1 53556364 53556364 C T SLC1A7 Silent p.A382A 0.16 TCGA-D5-6930-01 1 54477847 54477847 G T LDLRAD1 Silent p.T103T 0.28 TCGA-D5-6930-01 1 55603290 55603290 C T USP24 Silent p.K1033K 0.13 TCGA-D5-6930-01 1 60338642 60338643 - A HOOK1 3'UTR 0.46 TCGA-D5-6930-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.37 TCGA-D5-6930-01 1 63063515 63063517 AAG - ANGPTL3 In_Frame_Del p.E96del 0.19 TCGA-D5-6930-01 1 65845171 65845171 G A DNAJC6 Silent p.L210L 0.24 TCGA-D5-6930-01 1 6676842 6676842 G A PHF13 Missense_Mutation p.R22H 0.21 tolerated(0.07) benign(0.01) TCGA-D5-6930-01 1 70881711 70881711 G A CTH Missense_Mutation p.A81T 0.22 deleterious(0) probably_damaging(0.986) TCGA-D5-6930-01 1 72748312 72748312 G C NEGR1 5'UTR 0.44 TCGA-D5-6930-01 1 77627348 77627348 C T PIGK Missense_Mutation p.M211I 0.27 deleterious(0) probably_damaging(0.93) TCGA-D5-6930-01 1 7796446 7796446 C T CAMTA1 Missense_Mutation p.R1037C 0.09 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 1 78098556 78098556 G A ZZZ3 Nonsense_Mutation p.R162* 0.19 TCGA-D5-6930-01 1 82452623 82452623 C T LPHN2 Intron 0.20 TCGA-D5-6930-01 1 86173390 86173393 ATTT - ZNHIT6 Frame_Shift_Del p.E192Afs*7 0.20 TCGA-D5-6930-01 1 90487884 90487884 C T ZNF326 Nonsense_Mutation p.R461* 0.12 TCGA-D5-6930-01 1 9324883 9324883 C T H6PD Silent p.S777S 0.29 TCGA-D5-6930-01 1 9796071 9796071 G A CLSTN1 Nonsense_Mutation p.R536* 0.27 TCGA-D5-6930-01 1 985046 985046 G T AGRN Missense_Mutation p.A1539S 0.34 tolerated(0.37) benign(0.038) TCGA-D5-6930-01 20 10438856 10438856 G A SLX4IP Missense_Mutation p.A2T 0.14 tolerated(0.09) benign(0.439) TCGA-D5-6930-01 20 10603777 10603777 A - SLX4IP Frame_Shift_Del p.S328Afs*19 0.23 TCGA-D5-6930-01 20 13107313 13107313 C A SPTLC3 Missense_Mutation p.Q410K 0.26 deleterious(0.01) possibly_damaging(0.7) TCGA-D5-6930-01 20 13695403 13695404 - A ESF1 3'UTR 0.21 TCGA-D5-6930-01 20 13756819 13756819 G A ESF1 Silent p.S245S 0.21 TCGA-D5-6930-01 20 1424553 1424553 G T NSFL1C Silent p.I320I 0.19 TCGA-D5-6930-01 20 16360725 16360725 C T KIF16B Missense_Mutation p.R641H 0.27 deleterious(0.03) probably_damaging(1) TCGA-D5-6930-01 20 18297040 18297040 G A ZNF133 Silent p.T514T 0.17 TCGA-D5-6930-01 20 1895834 1895834 G A SIRPA Missense_Mutation p.A57T 0.25 tolerated(0.19) benign(0.217) TCGA-D5-6930-01 20 23028480 23028480 G A THBD Silent p.C554C 0.24 TCGA-D5-6930-01 20 23350365 23350365 G A GZF1 Missense_Mutation p.R591Q 0.10 deleterious(0.05) probably_damaging(0.999) TCGA-D5-6930-01 20 251829 251829 C T C20orf96 3'UTR 0.15 TCGA-D5-6930-01 20 25457227 25457227 G A NINL Silent p.H900H 0.22 TCGA-D5-6930-01 20 26084112 26084112 C T NCOR1P1 RNA 0.18 TCGA-D5-6930-01 20 2686345 2686345 G A EBF4 Missense_Mutation p.R83H 0.25 deleterious(0) probably_damaging(0.911) TCGA-D5-6930-01 20 31389202 31389202 C T DNMT3B Silent p.G705G 0.24 TCGA-D5-6930-01 20 31484325 31484325 C A EFCAB8 Silent p.R317R 0.25 TCGA-D5-6930-01 20 32232466 32232466 C T CBFA2T2 3'UTR 0.18 TCGA-D5-6930-01 20 33330547 33330547 C T NCOA6 Silent p.S1171S 0.10 TCGA-D5-6930-01 20 334207 334207 A G NRSN2 Silent p.S181S 0.24 TCGA-D5-6930-01 20 34242536 34242536 G T RBM12 Missense_Mutation p.P237T 0.20 tolerated(1) unknown(0) TCGA-D5-6930-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.17 TCGA-D5-6930-01 20 36766679 36766679 T A TGM2 Missense_Mutation p.N484I 0.15 tolerated(0.27) benign(0.055) TCGA-D5-6930-01 20 36946844 36946844 C A BPI Silent p.S214S 0.18 TCGA-D5-6930-01 20 37400382 37400382 G A ACTR5 Missense_Mutation p.A583T 0.18 tolerated(0.38) unknown(0) TCGA-D5-6930-01 20 39788273 39788273 G A PLCG1 Missense_Mutation p.R82H 0.12 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 20 40828007 40828009 CTT - PTPRT In_Frame_Del p.K788del 0.22 TCGA-D5-6930-01 20 42341721 42341721 C T MYBL2 Missense_Mutation p.S600F 0.24 tolerated(0.17) benign(0.046) TCGA-D5-6930-01 20 42697583 42697583 A G TOX2 3'UTR 0.21 TCGA-D5-6930-01 20 43093877 43093877 C T C20orf62 Missense_Mutation p.E15K 0.18 deleterious_low_confidence(0) unknown(0) TCGA-D5-6930-01 20 43545401 43545401 C T PABPC1L Missense_Mutation p.A131V 0.18 tolerated(0.77) benign(0.002) TCGA-D5-6930-01 20 43587100 43587100 C T TOMM34 Intron 0.20 TCGA-D5-6930-01 20 43836661 43836661 G A SEMG1 Silent p.A241A 0.23 TCGA-D5-6930-01 20 44682261 44682261 G A SLC12A5 Missense_Mutation p.M887I 0.31 tolerated(0.08) benign(0.04) TCGA-D5-6930-01 20 47570297 47570297 G A ARFGEF2 Missense_Mutation p.A270T 0.21 tolerated(0.72) benign(0) TCGA-D5-6930-01 20 47852689 47852689 G A DDX27 Missense_Mutation p.R508H 0.09 deleterious(0.02) possibly_damaging(0.614) TCGA-D5-6930-01 20 49354539 49354539 C A PARD6B Missense_Mutation p.P71H 0.31 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 20 49576032 49576032 A G MOCS3 Missense_Mutation p.D218G 0.28 tolerated(0.64) benign(0) TCGA-D5-6930-01 20 55904879 55904879 G T SPO11 5'UTR 0.31 TCGA-D5-6930-01 20 55967797 55967797 G A RBM38 Missense_Mutation p.A109T 0.21 deleterious(0) probably_damaging(0.996) TCGA-D5-6930-01 20 57274305 57274305 A T NPEPL1 Missense_Mutation p.D217V 0.33 deleterious(0) benign(0.251) TCGA-D5-6930-01 20 57429321 57429321 G A GNAS Missense_Mutation p.G334D 0.25 tolerated_low_confidence(0.08) unknown(0) TCGA-D5-6930-01 20 57767789 57767789 G A ZNF831 Missense_Mutation p.G572D 0.08 tolerated(0.09) benign(0.25) TCGA-D5-6930-01 20 58571708 58571708 A G CDH26 Silent p.R637R 0.12 TCGA-D5-6930-01 20 5904676 5904676 C A CHGB Missense_Mutation p.P629Q 0.10 tolerated(0.92) benign(0.032) TCGA-D5-6930-01 20 5924493 5924493 A G TRMT6 Intron 0.17 TCGA-D5-6930-01 20 60511946 60511946 G - CDH4 Frame_Shift_Del p.R902Dfs*17 0.09 TCGA-D5-6930-01 20 60775967 60775967 C A MTG2 Missense_Mutation p.A352D 0.27 deleterious(0) possibly_damaging(0.891) TCGA-D5-6930-01 20 60879585 60879585 C T ADRM1 Silent p.Y94Y 0.28 TCGA-D5-6930-01 20 60909374 60909374 C T LAMA5 Silent p.P869P 0.09 TCGA-D5-6930-01 20 61341233 61341233 C - NTSR1 Frame_Shift_Del p.T227Pfs*29 0.15 TCGA-D5-6930-01 20 61510959 61510959 G A DIDO1 Missense_Mutation p.R2117C 0.29 possibly_damaging(0.877) TCGA-D5-6930-01 20 62199846 62199846 C A HELZ2 Missense_Mutation p.G532V 0.22 tolerated(0.06) benign(0.08) TCGA-D5-6930-01 20 62365010 62365010 G A ZGPAT Missense_Mutation p.G264S 0.14 tolerated(1) benign(0.005) TCGA-D5-6930-01 20 62577831 62577831 C T UCKL1 Silent p.T93T 0.22 TCGA-D5-6930-01 20 62597652 62597652 C A ZNF512B Missense_Mutation p.K292N 0.26 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D5-6930-01 20 746383 746383 G A SLC52A3 Silent p.F12F 0.26 TCGA-D5-6930-01 20 865859 865859 C T ANGPT4 Missense_Mutation p.A233T 0.16 tolerated(0.69) benign(0.023) TCGA-D5-6930-01 21 18966485 18966485 T C BTG3 Missense_Mutation p.T273A 0.20 tolerated(0.51) benign(0.107) TCGA-D5-6930-01 21 30458200 30458200 C T MAP3K7CL Missense_Mutation p.P7S 0.11 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D5-6930-01 21 30926004 30926004 G T GRIK1 Missense_Mutation p.L877M 0.22 tolerated(0.26) benign(0.035) TCGA-D5-6930-01 21 31965042 31965042 G A KRTAP6-3 Missense_Mutation p.G86D 0.10 unknown(0) TCGA-D5-6930-01 21 31993029 31993029 C T KRTAP20-4 Missense_Mutation p.A18V 0.11 possibly_damaging(0.691) TCGA-D5-6930-01 21 33076188 33076188 G A SCAF4 Nonsense_Mutation p.R71* 0.13 TCGA-D5-6930-01 21 35469086 35469086 G A SLC5A3 Missense_Mutation p.S530N 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 21 35469262 35469262 G A SLC5A3 Missense_Mutation p.G589R 0.22 tolerated(0.18) benign(0.003) TCGA-D5-6930-01 21 35469983 35469983 C T SLC5A3 3'UTR 0.21 TCGA-D5-6930-01 21 35774505 35774505 T C C21orf140 5'Flank 0.33 TCGA-D5-6930-01 21 36193946 36193948 AGA - RUNX1 Intron 0.14 TCGA-D5-6930-01 21 37429749 37429749 C T SETD4 Intron 0.29 TCGA-D5-6930-01 21 41684181 41684181 C T DSCAM Nonsense_Mutation p.W630* 0.15 TCGA-D5-6930-01 21 42080552 42080552 G A DSCAM Silent p.G63G 0.22 TCGA-D5-6930-01 21 45502993 45502993 G A TRAPPC10 Missense_Mutation p.S683N 0.15 tolerated(0.22) possibly_damaging(0.474) TCGA-D5-6930-01 21 46117892 46117892 C T KRTAP10-12 3'UTR 0.30 TCGA-D5-6930-01 21 46875923 46875923 C - COL18A1 Frame_Shift_Del p.Q162Rfs*142 0.27 TCGA-D5-6930-01 21 46951347 46951347 G A SLC19A1 Missense_Mutation p.A302V 0.23 tolerated(0.16) benign(0.227) TCGA-D5-6930-01 21 46951531 46951531 C A SLC19A1 Missense_Mutation p.A241S 0.17 tolerated(0.34) benign(0.192) TCGA-D5-6930-01 21 47746420 47746420 G A PCNT Missense_Mutation p.A62T 0.25 benign(0.011) TCGA-D5-6930-01 21 47776923 47776923 C T PCNT Silent p.D657D 0.35 TCGA-D5-6930-01 22 18022563 18022563 C T CECR2 Missense_Mutation p.R890C 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.599) TCGA-D5-6930-01 22 18362123 18362123 G - MICAL3 Intron 0.10 TCGA-D5-6930-01 22 18897698 18897698 G A DGCR6 Silent p.A95A 0.16 TCGA-D5-6930-01 22 19346868 19346868 G A HIRA Missense_Mutation p.A742V 0.24 tolerated(0.1) benign(0.344) TCGA-D5-6930-01 22 21947227 21947227 G A UBE2L3 Nonsense_Mutation p.W93* 0.13 TCGA-D5-6930-01 22 22890515 22890515 G T PRAME Missense_Mutation p.L502M 0.21 tolerated(0.18) benign(0.276) TCGA-D5-6930-01 22 23523632 23523632 G A BCR Missense_Mutation p.R162H 0.36 deleterious_low_confidence(0) benign(0.105) TCGA-D5-6930-01 22 24056415 24056415 G A KB-1572G7.2 RNA 0.24 TCGA-D5-6930-01 22 29141967 29141967 C T HSCB Missense_Mutation p.A180V 0.09 tolerated(0.17) benign(0.005) TCGA-D5-6930-01 22 29439389 29439389 C T ZNRF3 Nonsense_Mutation p.R202* 0.11 TCGA-D5-6930-01 22 30197021 30197021 G A ASCC2 Silent p.S549S 0.07 TCGA-D5-6930-01 22 31485922 31485922 C - SMTN Frame_Shift_Del p.S239Afs*118 0.26 TCGA-D5-6930-01 22 31500996 31500996 G A SELM Missense_Mutation p.A133V 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-D5-6930-01 22 32783995 32783995 G A RTCB Missense_Mutation p.A501V 0.24 deleterious(0.02) benign(0.392) TCGA-D5-6930-01 22 35802640 35802640 G A MCM5 Missense_Mutation p.R173H 0.32 deleterious(0) probably_damaging(0.932) TCGA-D5-6930-01 22 37400060 37400060 C T TEX33 5'UTR 0.28 TCGA-D5-6930-01 22 37900249 37900249 G - CARD10 Frame_Shift_Del p.S527Vfs*31 0.26 TCGA-D5-6930-01 22 38481325 38481325 T C BAIAP2L2 Silent p.S524S 0.20 TCGA-D5-6930-01 22 38522378 38522378 G A PLA2G6 Missense_Mutation p.T476I 0.21 tolerated(0.11) benign(0.001) TCGA-D5-6930-01 22 39358705 39358705 C A APOBEC3A 3'UTR 0.31 TCGA-D5-6930-01 22 42093585 42093585 C T C22orf46 3'UTR 0.15 TCGA-D5-6930-01 22 42952611 42952611 C T SERHL2 Intron 0.19 TCGA-D5-6930-01 22 44258139 44258139 G T SULT4A1 Missense_Mutation p.P42T 0.20 deleterious(0.04) benign(0.007) TCGA-D5-6930-01 22 50439202 50439202 C A IL17REL Missense_Mutation p.R67L 0.12 tolerated(0.05) benign(0.34) TCGA-D5-6930-01 22 50716089 50716089 G A PLXNB2 Silent p.D1709D 0.33 TCGA-D5-6930-01 22 50853004 50853004 G T PPP6R2 Missense_Mutation p.K146N 0.26 deleterious(0) probably_damaging(0.991) TCGA-D5-6930-01 22 50898756 50898756 G - SBF1 Frame_Shift_Del p.S1077Afs*28 0.20 TCGA-D5-6930-01 22 50905848 50905848 G A SBF1 Silent p.H156H 0.23 TCGA-D5-6930-01 22 50943377 50943377 G A LMF2 Missense_Mutation p.R431C 0.32 deleterious(0.01) probably_damaging(0.932) TCGA-D5-6930-01 22 50987714 50987714 C T KLHDC7B Silent p.N373N 0.47 TCGA-D5-6930-01 2 100623820 100623820 C T AFF3 Missense_Mutation p.V118I 0.22 tolerated(0.06) probably_damaging(0.994) TCGA-D5-6930-01 2 10192394 10192394 A G KLF11 Silent p.K433K 0.25 TCGA-D5-6930-01 2 102959523 102959523 C A IL1RL1 Missense_Mutation p.A237D 0.22 deleterious(0) possibly_damaging(0.905) TCGA-D5-6930-01 2 10580890 10580890 C T ODC1 Missense_Mutation p.R449H 0.12 tolerated_low_confidence(0.58) benign(0) TCGA-D5-6930-01 2 108443411 108443411 C T RGPD4 5'UTR 0.12 TCGA-D5-6930-01 2 109276098 109276098 C T LIMS1 Missense_Mutation p.R74C 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-D5-6930-01 2 111431740 111431740 C T BUB1 Missense_Mutation p.E50K 0.11 deleterious(0) possibly_damaging(0.452) TCGA-D5-6930-01 2 114256698 114256698 G A FOXD4L1 5'UTR 0.20 TCGA-D5-6930-01 2 118771554 118771554 C T CCDC93 Silent p.G6G 0.21 TCGA-D5-6930-01 2 122522845 122522845 G A TSN Missense_Mutation p.G197R 0.11 deleterious(0) probably_damaging(0.992) TCGA-D5-6930-01 2 125204474 125204474 G A CNTNAP5 Missense_Mutation p.R293H 0.21 tolerated(0.53) probably_damaging(0.947) TCGA-D5-6930-01 2 128015293 128015293 C T ERCC3 Missense_Mutation p.R743H 0.14 tolerated(0.07) benign(0.014) TCGA-D5-6930-01 2 128247439 128247439 C A IWS1 Nonsense_Mutation p.E710* 0.24 TCGA-D5-6930-01 2 128408408 128408408 G A GPR17 Silent p.L61L 0.16 TCGA-D5-6930-01 2 128408506 128408506 C T GPR17 Missense_Mutation p.A94V 0.30 tolerated(0.09) possibly_damaging(0.908) TCGA-D5-6930-01 2 128408826 128408826 G A GPR17 Missense_Mutation p.V201M 0.25 tolerated(0.1) benign(0.418) TCGA-D5-6930-01 2 128482008 128482008 C T WDR33 Silent p.K365K 0.20 TCGA-D5-6930-01 2 128767914 128767914 A C SAP130 Silent p.T292T 0.11 TCGA-D5-6930-01 2 130737563 130737563 G A RAB6C 5'UTR 0.13 TCGA-D5-6930-01 2 130738487 130738487 G A RAB6C 3'UTR 0.26 TCGA-D5-6930-01 2 131810553 131810553 C T FAM168B Missense_Mutation p.A171T 0.24 tolerated_low_confidence(0.09) benign(0.012) TCGA-D5-6930-01 2 131976102 131976102 G A POTEE Missense_Mutation p.V43M 0.28 tolerated_low_confidence(0.16) possibly_damaging(0.623) TCGA-D5-6930-01 2 138421045 138421046 - A THSD7B Frame_Shift_Ins p.A1523Sfs*2 0.13 TCGA-D5-6930-01 2 139308552 139308552 C T SPOPL Missense_Mutation p.P94S 0.23 tolerated(0.22) benign(0.002) TCGA-D5-6930-01 2 144728299 144728299 A - GTDC1 Frame_Shift_Del p.F302Lfs*4 0.13 TCGA-D5-6930-01 2 149247480 149247480 A - MBD5 Frame_Shift_Del p.K1195Nfs*22 0.22 TCGA-D5-6930-01 2 152235958 152235958 C A TNFAIP6 Missense_Mutation p.P249T 0.28 tolerated(0.26) benign(0.001) TCGA-D5-6930-01 2 152954918 152954918 C A CACNB4 Missense_Mutation p.G25C 0.09 deleterious_low_confidence(0.03) probably_damaging(0.937) TCGA-D5-6930-01 2 153519148 153519148 C T PRPF40A Missense_Mutation p.R764Q 0.12 deleterious(0.02) possibly_damaging(0.553) TCGA-D5-6930-01 2 16085680 16085680 C T MYCN Missense_Mutation p.R286C 0.13 deleterious(0) probably_damaging(0.993) TCGA-D5-6930-01 2 160873167 160873167 T - PLA2R1 Frame_Shift_Del p.A504Qfs*47 0.28 TCGA-D5-6930-01 2 162081249 162081249 C T TANK Missense_Mutation p.T171I 0.20 tolerated(0.26) benign(0.009) TCGA-D5-6930-01 2 162719566 162719566 A - SLC4A10 Frame_Shift_Del p.N255Mfs*47 0.16 TCGA-D5-6930-01 2 163291947 163291947 G A KCNH7 Missense_Mutation p.A572V 0.12 deleterious(0) probably_damaging(0.991) TCGA-D5-6930-01 2 1652587 1652587 T C PXDN Missense_Mutation p.T989A 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-D5-6930-01 2 165349651 165349651 G A GRB14 Silent p.G506G 0.16 TCGA-D5-6930-01 2 165997322 165997322 G A SCN3A Nonsense_Mutation p.R620* 0.09 TCGA-D5-6930-01 2 166170594 166170595 - A SCN2A Frame_Shift_Ins p.Q456Afs*15 0.20 TCGA-D5-6930-01 2 166627085 166627088 ACTT - GALNT3 Frame_Shift_Del p.S42Ffs*14 0.22 TCGA-D5-6930-01 2 166755204 166755204 C T TTC21B Missense_Mutation p.R981H 0.20 tolerated(0.05) benign(0.032) TCGA-D5-6930-01 2 166789494 166789494 C - TTC21B Frame_Shift_Del p.D262Ifs*2 0.28 TCGA-D5-6930-01 2 166895999 166895999 C T SCN1A Silent p.T841T 0.15 TCGA-D5-6930-01 2 167263085 167263085 G A SCN7A Missense_Mutation p.R1352W 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 2 169038515 169038515 T - STK39 Frame_Shift_Del p.K98Nfs*10 0.21 TCGA-D5-6930-01 2 170062974 170062974 C A LRP2 Missense_Mutation p.R2419I 0.25 possibly_damaging(0.713) TCGA-D5-6930-01 2 170063137 170063137 T G LRP2 Missense_Mutation p.T2365P 0.21 benign(0.282) TCGA-D5-6930-01 2 170806461 170806461 C G UBR3 Missense_Mutation p.S1144W 0.25 deleterious(0.02) benign(0.24) TCGA-D5-6930-01 2 171705836 171705836 G A GAD1 Missense_Mutation p.R387H 0.26 deleterious(0.01) possibly_damaging(0.733) TCGA-D5-6930-01 2 175426890 175426890 C T WIPF1 3'UTR 0.16 TCGA-D5-6930-01 2 177054866 177054866 C T HOXD1 Missense_Mutation p.S328L 0.15 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-D5-6930-01 2 179255864 179255864 C T OSBPL6 Missense_Mutation p.A814V 0.06 tolerated(1) benign(0.002) TCGA-D5-6930-01 2 179395351 179395351 G A TTN Missense_Mutation p.H35331Y 0.25 TCGA-D5-6930-01 2 179433679 179433679 C T TTN Missense_Mutation p.G25727D 0.18 TCGA-D5-6930-01 2 179448263 179448263 T - TTN Intron 0.21 TCGA-D5-6930-01 2 179470002 179470002 G A TTN Missense_Mutation p.R17968C 0.21 TCGA-D5-6930-01 2 179494967 179494967 C T TTN Splice_Site p.X14761_splice 0.20 TCGA-D5-6930-01 2 179843280 179843280 C A CCDC141 Silent p.L116L 0.21 TCGA-D5-6930-01 2 179979934 179979934 C T SESTD1 Missense_Mutation p.C566Y 0.24 tolerated(0.21) probably_damaging(0.93) TCGA-D5-6930-01 2 183053749 183053749 T C PDE1A Silent p.P404P 0.22 TCGA-D5-6930-01 2 18765993 18765993 C T NT5C1B Silent p.S230S 0.27 TCGA-D5-6930-01 2 189928757 189928757 A C COL5A2 Silent p.G573G 0.22 TCGA-D5-6930-01 2 196674595 196674595 C T DNAH7 Silent p.R3254R 0.08 TCGA-D5-6930-01 2 198508896 198508896 C A RFTN2 Nonsense_Mutation p.E142* 0.13 TCGA-D5-6930-01 2 200193449 200193449 C T SATB2 Missense_Mutation p.S453N 0.19 tolerated(0.38) benign(0.002) TCGA-D5-6930-01 2 202139625 202139626 - G CASP8 Frame_Shift_Ins p.V264Gfs*13 0.13 TCGA-D5-6930-01 2 203407080 203407080 A - BMPR2 Frame_Shift_Del p.N442Tfs*32 0.22 TCGA-D5-6930-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.32 TCGA-D5-6930-01 2 203421006 203421006 G A BMPR2 Missense_Mutation p.R873Q 0.14 deleterious(0.05) possibly_damaging(0.476) TCGA-D5-6930-01 2 203620335 203620335 C T FAM117B Silent p.S345S 0.24 TCGA-D5-6930-01 2 206869248 206869248 G A INO80D Silent p.S976S 0.11 TCGA-D5-6930-01 2 207007450 207007450 T G NDUFS1 Missense_Mutation p.T379P 0.19 deleterious(0.01) benign(0.167) TCGA-D5-6930-01 2 207175655 207175655 C T ZDBF2 Silent p.L2135L 0.25 TCGA-D5-6930-01 2 211179701 211179701 C T MYL1 Silent p.P22P 0.25 TCGA-D5-6930-01 2 211507250 211507250 G A CPS1 Missense_Mutation p.R1007H 0.22 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 2 213872004 213872004 G T IKZF2 3'UTR 0.11 TCGA-D5-6930-01 2 216240047 216240047 G A FN1 Missense_Mutation p.P2016L 0.35 deleterious(0.02) possibly_damaging(0.788) TCGA-D5-6930-01 2 216256461 216256462 - G FN1 Frame_Shift_Ins p.S1383Ifs*3 0.22 TCGA-D5-6930-01 2 217293330 217293330 C T SMARCAL1 Missense_Mutation p.R387C 0.29 deleterious(0.02) probably_damaging(0.953) TCGA-D5-6930-01 2 219221630 219221630 C T C2orf62 Missense_Mutation p.T8I 0.27 tolerated_low_confidence(0.22) benign(0.003) TCGA-D5-6930-01 2 219886917 219886917 G A CCDC108 Silent p.G985G 0.16 TCGA-D5-6930-01 2 220420567 220420567 A - OBSL1 Intron 0.12 TCGA-D5-6930-01 2 225339057 225339057 G A CUL3 Missense_Mutation p.P738S 0.21 deleterious(0.02) possibly_damaging(0.859) TCGA-D5-6930-01 2 229890686 229890686 G A PID1 Missense_Mutation p.R137W 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6930-01 2 231067330 231067330 G A SP110 Missense_Mutation p.A338V 0.16 tolerated(0.14) unknown(0) TCGA-D5-6930-01 2 232262945 232262945 G A B3GNT7 Missense_Mutation p.R172H 0.21 deleterious(0.02) benign(0.103) TCGA-D5-6930-01 2 232656447 232656447 C T COPS7B Missense_Mutation p.A56V 0.31 tolerated(0.16) benign(0.001) TCGA-D5-6930-01 2 233273249 233273249 G T ALPPL2 Missense_Mutation p.Q274H 0.11 deleterious(0.03) benign(0.022) TCGA-D5-6930-01 2 233407187 233407187 C T CHRNG Silent p.G187G 0.12 TCGA-D5-6930-01 2 233407762 233407762 G A CHRNG Missense_Mutation p.A259T 0.18 tolerated(0.06) possibly_damaging(0.896) TCGA-D5-6930-01 2 238303588 238303588 C T COL6A3 Silent p.Q117Q 0.18 TCGA-D5-6930-01 2 238475779 238475779 C T PRLH Silent p.F75F 0.08 TCGA-D5-6930-01 2 239049468 239049468 C T KLHL30 Missense_Mutation p.R25C 0.12 deleterious(0.01) possibly_damaging(0.846) TCGA-D5-6930-01 2 23918500 23918500 C G KLHL29 Missense_Mutation p.A517G 0.11 tolerated(0.2) benign(0.005) TCGA-D5-6930-01 2 240061460 240061460 G A HDAC4 Missense_Mutation p.P300S 0.16 tolerated(0.5) probably_damaging(0.999) TCGA-D5-6930-01 2 24046398 24046398 C T ATAD2B Missense_Mutation p.A621T 0.19 deleterious(0.04) benign(0.301) TCGA-D5-6930-01 2 240984980 240984980 G A OR6B3 Silent p.G170G 0.10 TCGA-D5-6930-01 2 241078673 241078673 G - OTOS Frame_Shift_Del p.Q62Rfs*? 0.11 TCGA-D5-6930-01 2 241078768 241078768 G T OTOS Missense_Mutation p.P30H 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-D5-6930-01 2 241705146 241705146 C A KIF1A Missense_Mutation p.E583D 0.13 tolerated(0.19) benign(0.012) TCGA-D5-6930-01 2 241706366 241706366 G A KIF1A Silent p.C550C 0.16 TCGA-D5-6930-01 2 241710471 241710471 A G KIF1A Missense_Mutation p.S420P 0.33 tolerated(0.2) benign(0.05) TCGA-D5-6930-01 2 242080031 242080031 G A PASK Missense_Mutation p.R112W 0.09 deleterious(0.02) probably_damaging(0.948) TCGA-D5-6930-01 2 242169574 242169574 C A HDLBP Missense_Mutation p.E1195D 0.21 tolerated(0.12) benign(0.02) TCGA-D5-6930-01 2 242438437 242438437 G A STK25 Silent p.F246F 0.22 TCGA-D5-6930-01 2 25042664 25042664 G A CENPO 3'UTR 0.26 TCGA-D5-6930-01 2 25497874 25497874 G A DNMT3A Missense_Mutation p.A192V 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-D5-6930-01 2 26852317 26852317 C T CIB4 Silent p.T49T 0.12 TCGA-D5-6930-01 2 272232 272232 G A ACP1 Missense_Mutation p.G53D 0.26 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 2 27459689 27459689 C T CAD Nonsense_Mutation p.R1463* 0.27 TCGA-D5-6930-01 2 29451843 29451843 G - ALK Frame_Shift_Del p.Q908Rfs*3 0.20 TCGA-D5-6930-01 2 3593251 3593251 G A RNASEH1 3'UTR 0.19 TCGA-D5-6930-01 2 38975276 38975276 C T SRSF7 Missense_Mutation p.R162Q 0.23 deleterious(0.01) unknown(0) TCGA-D5-6930-01 2 39249877 39249878 CT - SOS1 Frame_Shift_Del p.E564Gfs*7 0.21 TCGA-D5-6930-01 2 39944599 39944599 C T TMEM178A 3'UTR 0.35 TCGA-D5-6930-01 2 40366680 40366680 C T SLC8A1 Silent p.A802A 0.31 TCGA-D5-6930-01 2 43965632 43965632 G T PLEKHH2 Missense_Mutation p.Q1032H 0.22 tolerated(0.13) benign(0.02) TCGA-D5-6930-01 2 46770897 46770897 C T RHOQ Silent p.S49S 0.20 TCGA-D5-6930-01 2 47703631 47703631 C T MSH2 Nonsense_Mutation p.R711* 0.31 TCGA-D5-6930-01 2 48030613 48030613 G A MSH6 Missense_Mutation p.R1076H 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6930-01 2 48808307 48808307 G A STON1-GTF2A1L Missense_Mutation p.D179N 0.13 tolerated(0.24) probably_damaging(0.998) TCGA-D5-6930-01 2 49190967 49190967 A G FSHR Silent p.T331T 0.18 TCGA-D5-6930-01 2 56411928 56411928 C T CCDC85A Missense_Mutation p.R57W 0.17 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 2 58311253 58311253 G A VRK2 Missense_Mutation p.A56T 0.26 tolerated(0.08) possibly_damaging(0.826) TCGA-D5-6930-01 2 5833196 5833196 G A SOX11 Missense_Mutation p.D115N 0.19 deleterious(0) probably_damaging(0.994) TCGA-D5-6930-01 2 60687925 60687925 C A BCL11A Nonsense_Mutation p.G708* 0.24 TCGA-D5-6930-01 2 68882078 68882078 C T PROKR1 Silent p.A184A 0.19 TCGA-D5-6930-01 2 69554123 69554123 C T GFPT1 Missense_Mutation p.D660N 0.16 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 2 70528091 70528091 C T FAM136A Missense_Mutation p.A37T 0.24 tolerated(0.1) possibly_damaging(0.573) TCGA-D5-6930-01 2 71591243 71591243 C T ZNF638 Silent p.C526C 0.15 TCGA-D5-6930-01 2 7179899 7179899 G A RNF144A 3'UTR 0.16 TCGA-D5-6930-01 2 72371229 72371229 G A CYP26B1 Silent p.L106L 0.16 TCGA-D5-6930-01 2 73161004 73161004 G A EMX1 Missense_Mutation p.G265D 0.24 deleterious(0) probably_damaging(0.99) TCGA-D5-6930-01 2 74763924 74763924 C - LOXL3 Frame_Shift_Del p.G275Afs*5 0.48 TCGA-D5-6930-01 2 77746990 77746990 C A LRRTM4 Missense_Mutation p.G2V 0.22 deleterious(0) benign(0.18) TCGA-D5-6930-01 2 80136745 80136745 C T CTNNA2 Missense_Mutation p.T293M 0.19 deleterious(0.02) possibly_damaging(0.707) TCGA-D5-6930-01 2 85108084 85108084 C T TRABD2A Missense_Mutation p.G27D 0.29 tolerated(0.84) benign(0.002) TCGA-D5-6930-01 2 85280523 85280523 T C KCMF1 Silent p.P379P 0.24 TCGA-D5-6930-01 2 89103957 89103957 G A ANKRD36BP2 RNA 0.32 TCGA-D5-6930-01 2 89326789 89326789 G A IGKV3-11 Missense_Mutation p.A75V 0.31 tolerated(0.5) benign(0.112) TCGA-D5-6930-01 2 89986923 89986923 T C IGKV2D-29 Silent p.P68P 0.22 TCGA-D5-6930-01 2 95522731 95522731 C T ANKRD20A8P RNA 0.20 TCGA-D5-6930-01 2 95947717 95947717 G A PROM2 Silent p.S532S 0.25 TCGA-D5-6930-01 2 96992986 96992986 G A ITPRIPL1 Missense_Mutation p.R214H 0.21 tolerated(0.45) benign(0.023) TCGA-D5-6930-01 2 98274553 98274553 C T ACTR1B Missense_Mutation p.E260K 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 2 99136467 99136467 G A INPP4A 5'UTR 0.13 TCGA-D5-6930-01 3 10065359 10065359 G A FANCD2 5'Flank 0.25 TCGA-D5-6930-01 3 10085204 10085206 TAT - FANCD2 In_Frame_Del p.I344del 0.16 TCGA-D5-6930-01 3 101311653 101311654 - T PCNP 3'UTR 0.16 TCGA-D5-6930-01 3 107881217 107881217 A - IFT57 3'UTR 0.21 TCGA-D5-6930-01 3 108204066 108204066 T A MYH15 Missense_Mutation p.D349V 0.24 deleterious(0) probably_damaging(0.988) TCGA-D5-6930-01 3 10858099 10858099 G A SLC6A11 Missense_Mutation p.R50H 0.18 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 3 113371901 113371901 A - KIAA2018 3'UTR 0.26 TCGA-D5-6930-01 3 113375695 113375695 G A KIAA2018 Nonsense_Mutation p.Q1612* 0.24 TCGA-D5-6930-01 3 119134527 119134527 T A ARHGAP31 Missense_Mutation p.S1251T 0.17 tolerated(0.24) benign(0.08) TCGA-D5-6930-01 3 119361224 119361224 G A POPDC2 3'UTR 0.21 TCGA-D5-6930-01 3 121340958 121340958 G A FBXO40 Missense_Mutation p.A228T 0.38 deleterious(0.01) possibly_damaging(0.511) TCGA-D5-6930-01 3 121353083 121353083 C T HCLS1 Missense_Mutation p.A292T 0.17 tolerated(0.21) possibly_damaging(0.483) TCGA-D5-6930-01 3 122422728 122422728 G C PARP14 Missense_Mutation p.G1074A 0.25 deleterious(0.01) probably_damaging(1) TCGA-D5-6930-01 3 122632387 122632387 G A SEMA5B Silent p.C812C 0.15 TCGA-D5-6930-01 3 124153247 124153247 G A KALRN Missense_Mutation p.D973N 0.25 tolerated(0.07) benign(0.213) TCGA-D5-6930-01 3 128840146 128840146 G A RAB43 Nonsense_Mutation p.Q63* 0.09 TCGA-D5-6930-01 3 12977834 12977834 C T IQSEC1 Missense_Mutation p.A242T 0.14 tolerated(0.11) benign(0.041) TCGA-D5-6930-01 3 12983248 12983248 C T IQSEC1 Silent p.T61T 0.13 TCGA-D5-6930-01 3 130095086 130095086 G A COL6A5 Missense_Mutation p.G25D 0.15 deleterious(0.02) benign(0.188) TCGA-D5-6930-01 3 130305378 130305378 G T COL6A6 Silent p.L1333L 0.24 TCGA-D5-6930-01 3 130712833 130712833 G A ATP2C1 Missense_Mutation p.V684I 0.23 tolerated(0.43) possibly_damaging(0.535) TCGA-D5-6930-01 3 130743085 130743085 G A ASTE1 Nonsense_Mutation p.Q356* 0.26 TCGA-D5-6930-01 3 133647709 133647709 A G C3orf36 5'UTR 0.29 TCGA-D5-6930-01 3 135864031 135864031 G A PPP2R3A 3'UTR 0.12 TCGA-D5-6930-01 3 136196171 136196171 T C STAG1 Missense_Mutation p.D329G 0.26 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 3 136287655 136287655 C T STAG1 Missense_Mutation p.A116T 0.12 deleterious(0.01) benign(0.271) TCGA-D5-6930-01 3 1424690 1424690 G A CNTN6 Missense_Mutation p.G744D 0.22 deleterious(0.03) probably_damaging(0.915) TCGA-D5-6930-01 3 142681451 142681451 C T PAQR9 Missense_Mutation p.R243H 0.14 deleterious(0) probably_damaging(0.995) TCGA-D5-6930-01 3 142681728 142681728 C T PAQR9 Missense_Mutation p.A151T 0.17 tolerated(0.07) probably_damaging(0.977) TCGA-D5-6930-01 3 14709638 14709638 A - CCDC174 Frame_Shift_Del p.K303Rfs*2 0.21 TCGA-D5-6930-01 3 149629768 149629768 C T RNF13 Silent p.G168G 0.17 TCGA-D5-6930-01 3 150421551 150421551 C T FAM194A Silent p.E45E 0.15 TCGA-D5-6930-01 3 15452853 15452853 C T METTL6 Silent p.L255L 0.21 TCGA-D5-6930-01 3 155615763 155615763 C T GMPS Missense_Mutation p.A86V 0.17 deleterious(0) probably_damaging(0.983) TCGA-D5-6930-01 3 160156159 160156159 C T TRIM59 Silent p.E271E 0.19 TCGA-D5-6930-01 3 160395489 160395489 G A ARL14 Missense_Mutation p.V119I 0.12 tolerated(0.19) benign(0.129) TCGA-D5-6930-01 3 161063918 161063918 G A SPTSSB Missense_Mutation p.S65L 0.30 tolerated(0.7) benign(0.01) TCGA-D5-6930-01 3 167167159 167167159 C T SERPINI2 Silent p.T332T 0.21 TCGA-D5-6930-01 3 170819312 170819312 G A TNIK Silent p.S839S 0.26 TCGA-D5-6930-01 3 179066679 179066679 G T MFN1 Missense_Mutation p.A14S 0.27 deleterious(0) possibly_damaging(0.885) TCGA-D5-6930-01 3 182990784 182990784 T - MCF2L2 Intron 0.22 TCGA-D5-6930-01 3 183209811 183209811 G A KLHL6 Silent p.C590C 0.14 TCGA-D5-6930-01 3 183995188 183995188 C T ECE2 Missense_Mutation p.R256C 0.24 deleterious(0) probably_damaging(0.952) TCGA-D5-6930-01 3 184037588 184037588 C T EIF4G1 Missense_Mutation p.T186M 0.26 deleterious(0.04) possibly_damaging(0.609) TCGA-D5-6930-01 3 184042723 184042723 C T EIF4G1 Missense_Mutation p.R900W 0.13 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 3 184075468 184075468 C T CLCN2 Missense_Mutation p.E238K 0.17 deleterious(0) probably_damaging(0.981) TCGA-D5-6930-01 3 184100113 184100113 G A CHRD Intron 0.26 TCGA-D5-6930-01 3 184103894 184103894 G A CHRD Missense_Mutation p.A627T 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 3 184295211 184295211 C T EPHB3 Missense_Mutation p.P479S 0.24 tolerated(0.08) possibly_damaging(0.904) TCGA-D5-6930-01 3 184647447 184647447 C T VPS8 Nonsense_Mutation p.R932* 0.24 TCGA-D5-6930-01 3 185766547 185766547 C T ETV5 Missense_Mutation p.E472K 0.28 deleterious(0) benign(0.038) TCGA-D5-6930-01 3 190120187 190120187 G A CLDN16 Missense_Mutation p.R129H 0.12 tolerated(0.21) probably_damaging(0.973) TCGA-D5-6930-01 3 191078926 191078926 G A CCDC50 Missense_Mutation p.R103H 0.26 deleterious(0) probably_damaging(0.991) TCGA-D5-6930-01 3 193031964 193031964 G A ATP13A5 Missense_Mutation p.A726V 0.10 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 3 195250549 195250549 C T PPP1R2 Missense_Mutation p.R115Q 0.16 tolerated(0.93) benign(0.009) TCGA-D5-6930-01 3 195507900 195507900 G A MUC4 Silent p.H3517H 0.19 TCGA-D5-6930-01 3 195512409 195512409 G T MUC4 Silent p.A2014A 0.11 TCGA-D5-6930-01 3 23574093 23574093 G A UBE2E2 Missense_Mutation p.V137M 0.21 tolerated(0.08) benign(0.173) TCGA-D5-6930-01 3 27763557 27763557 C T EOMES Missense_Mutation p.A77T 0.23 tolerated_low_confidence(0.67) benign(0.01) TCGA-D5-6930-01 3 3182322 3182323 TA - TRNT1 Frame_Shift_Del p.M158Vfs*5 0.15 TCGA-D5-6930-01 3 38162009 38162009 C A DLEC1 Missense_Mutation p.P1592H 0.24 deleterious(0) probably_damaging(0.967) TCGA-D5-6930-01 3 38616899 38616899 C T SCN5A Silent p.Q1185Q 0.12 TCGA-D5-6930-01 3 39227308 39227308 G T XIRP1 Missense_Mutation p.A1210E 0.21 tolerated(0.08) benign(0.159) TCGA-D5-6930-01 3 39374912 39374912 A - CCR8 3'UTR 0.20 TCGA-D5-6930-01 3 40231769 40231769 C T MYRIP Silent p.L494L 0.23 TCGA-D5-6930-01 3 40571741 40571742 GA - ZNF621 Frame_Shift_Del p.E68Sfs*21 0.14 TCGA-D5-6930-01 3 44409021 44409021 C T TCAIM Silent p.C131C 0.09 TCGA-D5-6930-01 3 44488236 44488236 T - ZNF445 Frame_Shift_Del p.K976Sfs*50 0.15 TCGA-D5-6930-01 3 44926907 44926907 G A TGM4 Missense_Mutation p.R37Q 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 3 45972733 45972733 C T FYCO1 Missense_Mutation p.G1361R 0.29 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 3 46477600 46477600 C A LTF 3'UTR 0.19 TCGA-D5-6930-01 3 46900985 46900985 C T MYL3 Missense_Mutation p.R154H 0.16 deleterious(0.03) benign(0.311) TCGA-D5-6930-01 3 47032926 47032926 T C NBEAL2 Missense_Mutation p.S225P 0.14 deleterious(0) benign(0.421) TCGA-D5-6930-01 3 47454490 47454490 T C PTPN23 Missense_Mutation p.S1576P 0.12 unknown(0) TCGA-D5-6930-01 3 47890245 47890245 G A DHX30 Missense_Mutation p.V903I 0.23 tolerated(0.23) benign(0.273) TCGA-D5-6930-01 3 4824392 4824392 C T ITPR1 Silent p.N2144N 0.24 TCGA-D5-6930-01 3 49722004 49722004 C T MST1 Missense_Mutation p.A619T 0.23 tolerated(0.22) benign(0.171) TCGA-D5-6930-01 3 50326741 50326741 C T IFRD2 Missense_Mutation p.R341Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 3 50388757 50388757 G A CYB561D2 5'UTR 0.21 TCGA-D5-6930-01 3 51352530 51352530 G A DOCK3 Missense_Mutation p.E1125K 0.22 deleterious(0.02) probably_damaging(0.922) TCGA-D5-6930-01 3 51749791 51749791 G A GRM2 Missense_Mutation p.A668T 0.21 tolerated(0.05) benign(0.069) TCGA-D5-6930-01 3 52245565 52245565 C T ALAS1 Missense_Mutation p.R533W 0.24 deleterious(0) probably_damaging(0.967) TCGA-D5-6930-01 3 52257562 52257562 C T TLR9 Missense_Mutation p.R411H 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 3 52403989 52403989 A C DNAH1 Missense_Mutation p.K2031T 0.08 benign(0.004) TCGA-D5-6930-01 3 52410009 52410009 C T DNAH1 Missense_Mutation p.P2400S 0.13 benign(0.002) TCGA-D5-6930-01 3 52542330 52542330 G A STAB1 Silent p.T730T 0.28 TCGA-D5-6930-01 3 52745831 52745831 G A NEK4 Missense_Mutation p.R830C 0.18 deleterious(0) probably_damaging(0.988) TCGA-D5-6930-01 3 53220653 53220653 G - PRKCD Frame_Shift_Del p.D434Tfs*2 0.35 TCGA-D5-6930-01 3 53899286 53899286 C T IL17RB Missense_Mutation p.S487L 0.33 tolerated(0.17) benign(0.231) TCGA-D5-6930-01 3 57280178 57280178 T C APPL1 Silent p.C183C 0.11 TCGA-D5-6930-01 3 58134515 58134515 C T FLNB Silent p.G2040G 0.31 TCGA-D5-6930-01 3 62248340 62248340 A T PTPRG Intron 0.24 TCGA-D5-6930-01 3 64589680 64589680 C - ADAMTS9 Frame_Shift_Del p.C1222Lfs*15 0.23 TCGA-D5-6930-01 3 64606837 64606837 G A ADAMTS9 Silent p.P922P 0.18 TCGA-D5-6930-01 3 65364987 65364987 C T MAGI1 Missense_Mutation p.G982S 0.13 deleterious(0) probably_damaging(0.986) TCGA-D5-6930-01 3 8775548 8775548 C - CAV3 5'UTR 0.24 TCGA-D5-6930-01 3 89391087 89391087 C T EPHA3 Nonsense_Mutation p.R385* 0.17 TCGA-D5-6930-01 3 89462313 89462313 T G EPHA3 Silent p.T595T 0.17 TCGA-D5-6930-01 3 9100074 9100074 C T SRGAP3 Missense_Mutation p.R295H 0.27 tolerated(0.13) probably_damaging(0.996) TCGA-D5-6930-01 3 9166452 9166452 G A SRGAP3 Missense_Mutation p.R73C 0.23 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 3 9729525 9729525 T - MTMR14 Frame_Shift_Del p.L397* 0.18 TCGA-D5-6930-01 3 97611765 97611765 A T CRYBG3 Missense_Mutation p.D553V 0.19 tolerated(0.19) benign(0.315) TCGA-D5-6930-01 4 102019596 102019596 C T PPP3CA Silent p.L190L 0.22 TCGA-D5-6930-01 4 103911012 103911013 - T SLC9B1 Frame_Shift_Ins p.E53Gfs*36 0.17 TCGA-D5-6930-01 4 10509652 10509652 C T CLNK Silent p.Q305Q 0.15 TCGA-D5-6930-01 4 106158080 106158080 A G TET2 Missense_Mutation p.H994R 0.21 tolerated(1) benign(0) TCGA-D5-6930-01 4 106766722 106766722 A C GSTCD Silent p.G630G 0.21 TCGA-D5-6930-01 4 107092412 107092412 C T TBCK Missense_Mutation p.R692H 0.19 deleterious(0.02) possibly_damaging(0.899) TCGA-D5-6930-01 4 107956691 107956691 C G DKK2 Missense_Mutation p.V20L 0.22 tolerated(0.25) benign(0.097) TCGA-D5-6930-01 4 122734485 122734487 AGA - EXOSC9 In_Frame_Del p.E310del 0.21 TCGA-D5-6930-01 4 123156017 123156017 G A KIAA1109 Missense_Mutation p.G1138D 0.12 probably_damaging(1) TCGA-D5-6930-01 4 126238515 126238515 C T FAT4 Missense_Mutation p.R317C 0.11 probably_damaging(0.954) TCGA-D5-6930-01 4 126372834 126372834 A - FAT4 Frame_Shift_Del p.T3555Pfs*6 0.18 TCGA-D5-6930-01 4 134071765 134071765 G A PCDH10 Missense_Mutation p.R157H 0.44 tolerated(0.15) possibly_damaging(0.853) TCGA-D5-6930-01 4 134072744 134072744 C T PCDH10 Silent p.Y483Y 0.13 TCGA-D5-6930-01 4 134072781 134072781 G A PCDH10 Missense_Mutation p.A496T 0.20 deleterious(0) possibly_damaging(0.875) TCGA-D5-6930-01 4 1348626 1348626 G A UVSSA Silent p.S346S 0.48 TCGA-D5-6930-01 4 13601928 13601928 G - BOD1L1 Frame_Shift_Del p.P2199Qfs*25 0.12 TCGA-D5-6930-01 4 1389040 1389040 G A CRIPAK Nonsense_Mutation p.W247* 0.30 TCGA-D5-6930-01 4 143352390 143352390 G A INPP4B Missense_Mutation p.A8V 0.22 deleterious_low_confidence(0.02) benign(0.067) TCGA-D5-6930-01 4 144135298 144135298 T A USP38 Missense_Mutation p.N723K 0.19 deleterious(0) possibly_damaging(0.588) TCGA-D5-6930-01 4 144135911 144135911 T A USP38 Missense_Mutation p.S928T 0.20 deleterious(0) probably_damaging(0.994) TCGA-D5-6930-01 4 146030289 146030289 C T ABCE1 Missense_Mutation p.P98L 0.26 deleterious(0) possibly_damaging(0.888) TCGA-D5-6930-01 4 147561459 147561459 G A POU4F2 Silent p.S243S 0.31 TCGA-D5-6930-01 4 152577927 152577927 A - FAM160A1 Frame_Shift_Del p.N917Tfs*33 0.20 TCGA-D5-6930-01 4 154216996 154216996 C T TRIM2 Nonsense_Mutation p.R440* 0.23 TCGA-D5-6930-01 4 154624127 154624127 C T TLR2 Missense_Mutation p.S23F 0.17 deleterious(0.05) benign(0.379) TCGA-D5-6930-01 4 154702728 154702728 C T SFRP2 Missense_Mutation p.A255T 0.14 tolerated(0.3) benign(0.318) TCGA-D5-6930-01 4 15689343 15689343 C T FAM200B Missense_Mutation p.A248V 0.16 tolerated(0.89) benign(0.001) TCGA-D5-6930-01 4 159750300 159750302 AGC - FNIP2 In_Frame_Del p.S105del 0.17 TCGA-D5-6930-01 4 16189920 16189920 G A TAPT1 Missense_Mutation p.T224I 0.24 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 4 162680601 162680601 T A FSTL5 Missense_Mutation p.D230V 0.22 deleterious(0) probably_damaging(0.994) TCGA-D5-6930-01 4 17843979 17843979 G T NCAPG Missense_Mutation p.Q967H 0.17 tolerated(0.17) benign(0.005) TCGA-D5-6930-01 4 183675916 183675916 G A TENM3 Missense_Mutation p.A1466T 0.31 deleterious(0.02) benign(0.042) TCGA-D5-6930-01 4 183694641 183694641 C T TENM3 Missense_Mutation p.R1637C 0.12 deleterious(0) possibly_damaging(0.876) TCGA-D5-6930-01 4 183714328 183714328 C T TENM3 Missense_Mutation p.A2168V 0.15 tolerated(0.08) possibly_damaging(0.75) TCGA-D5-6930-01 4 184601399 184601399 A - TRAPPC11 Frame_Shift_Del p.T366Pfs*9 0.21 TCGA-D5-6930-01 4 187209784 187209784 C T F11 3'UTR 0.09 TCGA-D5-6930-01 4 187539019 187539019 G T FAT1 Silent p.T2907T 0.18 TCGA-D5-6930-01 4 187557177 187557177 A G FAT1 Splice_Site p.X1395_splice 0.10 TCGA-D5-6930-01 4 187629385 187629385 C T FAT1 Missense_Mutation p.V533I 0.30 benign(0.012) TCGA-D5-6930-01 4 23825935 23825935 C T PPARGC1A Missense_Mutation p.R282H 0.09 deleterious(0.04) possibly_damaging(0.878) TCGA-D5-6930-01 4 25676012 25676012 G A SLC34A2 Silent p.T437T 0.26 TCGA-D5-6930-01 4 26616053 26616053 G A TBC1D19 Missense_Mutation p.A66T 0.29 tolerated(0.52) possibly_damaging(0.766) TCGA-D5-6930-01 4 30723984 30723984 G A PCDH7 Missense_Mutation p.E314K 0.17 deleterious(0) possibly_damaging(0.547) TCGA-D5-6930-01 4 3219671 3219671 C - HTT Frame_Shift_Del p.P2413Hfs*44 0.50 TCGA-D5-6930-01 4 36295268 36295268 C T DTHD1 Nonsense_Mutation p.R322* 0.24 TCGA-D5-6930-01 4 39310612 39310612 T - RFC1 Frame_Shift_Del p.N510Mfs*33 0.13 TCGA-D5-6930-01 4 39449989 39449989 C T KLB Missense_Mutation p.P940S 0.25 deleterious(0.03) benign(0.438) TCGA-D5-6930-01 4 39478822 39478822 C T LIAS 3'UTR 0.26 TCGA-D5-6930-01 4 41266139 41266139 G A UCHL1 Silent p.P182P 0.25 TCGA-D5-6930-01 4 42145677 42145677 G A BEND4 Silent p.G274G 0.21 TCGA-D5-6930-01 4 4283621 4283621 G A LYAR Silent p.G42G 0.10 TCGA-D5-6930-01 4 48151686 48151686 C T TEC Silent p.R298R 0.25 TCGA-D5-6930-01 4 48422394 48422394 G T SLAIN2 Missense_Mutation p.R538I 0.20 deleterious(0) probably_damaging(0.996) TCGA-D5-6930-01 4 5053596 5053596 C T STK32B Silent p.G2G 0.21 TCGA-D5-6930-01 4 55597547 55597547 T C KIT Missense_Mutation p.V732A 0.15 tolerated(0.11) probably_damaging(0.955) TCGA-D5-6930-01 4 56301418 56301418 G A CLOCK 3'UTR 0.36 TCGA-D5-6930-01 4 57215970 57215970 G A AASDH Silent p.S649S 0.24 TCGA-D5-6930-01 4 62598835 62598835 C - LPHN3 Frame_Shift_Del p.P254Lfs*10 0.21 TCGA-D5-6930-01 4 6610888 6610888 C T MAN2B2 Silent p.N623N 0.20 TCGA-D5-6930-01 4 66242742 66242742 G A EPHA5 Silent p.C610C 0.27 TCGA-D5-6930-01 4 68610354 68610354 A - GNRHR Frame_Shift_Del p.F225Sfs*4 0.08 TCGA-D5-6930-01 4 69093622 69093622 T - TMPRSS11B 3'UTR 0.24 TCGA-D5-6930-01 4 69816941 69816941 G A UGT2A3 Nonsense_Mutation p.R180* 0.26 TCGA-D5-6930-01 4 71063686 71063688 CAG - ODAM In_Frame_Del p.Q66del 0.15 TCGA-D5-6930-01 4 738412 738415 CAAA - PCGF3 Frame_Shift_Del p.N134Kfs*21 0.25 TCGA-D5-6930-01 4 77192806 77192806 C T FAM47E Missense_Mutation p.T252M 0.26 tolerated(0.27) benign(0.012) TCGA-D5-6930-01 4 7765484 7765484 G A AFAP1 3'UTR 0.22 TCGA-D5-6930-01 4 79462079 79462079 C T FRAS1 Missense_Mutation p.P3947L 0.29 probably_damaging(0.996) TCGA-D5-6930-01 4 79531298 79531298 G A ANXA3 3'UTR 0.26 TCGA-D5-6930-01 4 8229023 8229023 C T SH3TC1 Silent p.S534S 0.19 TCGA-D5-6930-01 4 8229946 8229946 C T SH3TC1 Missense_Mutation p.P842L 0.23 tolerated(0.37) benign(0.002) TCGA-D5-6930-01 4 83783694 83783694 G A SEC31A Missense_Mutation p.A514V 0.20 tolerated(0.16) benign(0.001) TCGA-D5-6930-01 4 87607924 87607924 G T PTPN13 Missense_Mutation p.S119I 0.11 deleterious(0) probably_damaging(0.929) TCGA-D5-6930-01 4 88759836 88759836 G A MEPE Missense_Mutation p.R36K 0.25 tolerated(0.82) benign(0.038) TCGA-D5-6930-01 4 88977365 88977365 C T PKD2 Missense_Mutation p.A615V 0.29 deleterious(0) probably_damaging(0.993) TCGA-D5-6930-01 4 89015788 89015789 - A ABCG2 Frame_Shift_Ins p.L587Ffs*18 0.12 TCGA-D5-6930-01 4 91844587 91844587 C T CCSER1 Silent p.L721L 0.19 TCGA-D5-6930-01 4 941649 941649 A C TMEM175 Missense_Mutation p.D41A 0.25 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 5 101583043 101583043 G A SLCO4C1 Missense_Mutation p.A575V 0.22 tolerated(0.22) benign(0.046) TCGA-D5-6930-01 5 101834395 101834395 T C SLCO6A1 Missense_Mutation p.R52G 0.13 tolerated(0.25) benign(0.039) TCGA-D5-6930-01 5 102345565 102345565 C T PAM Missense_Mutation p.R776C 0.15 deleterious(0) probably_damaging(0.91) TCGA-D5-6930-01 5 1075539 1075539 C T SLC12A7 Silent p.A638A 0.35 TCGA-D5-6930-01 5 108290522 108290522 A - FER Frame_Shift_Del p.K476Nfs*53 0.25 TCGA-D5-6930-01 5 108704383 108704384 - T PJA2 Frame_Shift_Ins p.D450Rfs*6 0.15 TCGA-D5-6930-01 5 118970345 118970345 G A FAM170A Missense_Mutation p.G301E 0.23 tolerated_low_confidence(1) benign(0) TCGA-D5-6930-01 5 121187725 121187725 C T FTMT Missense_Mutation p.R23C 0.27 tolerated_low_confidence(0.09) benign(0.007) TCGA-D5-6930-01 5 123984382 123984382 C T ZNF608 Silent p.K565K 0.13 TCGA-D5-6930-01 5 131132611 131132611 C T FNIP1 Missense_Mutation p.A2T 0.27 tolerated_low_confidence(0.09) possibly_damaging(0.555) TCGA-D5-6930-01 5 134190742 134190742 T C C5orf24 Missense_Mutation p.M51T 0.21 deleterious_low_confidence(0.01) benign(0.05) TCGA-D5-6930-01 5 135385184 135385184 G A TGFBI Silent p.T276T 0.11 TCGA-D5-6930-01 5 137486638 137486638 G A BRD8 Silent p.C972C 0.09 TCGA-D5-6930-01 5 138715979 138715979 T C SLC23A1 Missense_Mutation p.T193A 0.22 tolerated(1) benign(0.004) TCGA-D5-6930-01 5 139189339 139189339 C T PSD2 Missense_Mutation p.A105V 0.21 deleterious_low_confidence(0.04) benign(0.002) TCGA-D5-6930-01 5 139495418 139495418 C T PURA 3'UTR 0.20 TCGA-D5-6930-01 5 140048664 140048665 - G WDR55 Frame_Shift_Ins p.K223Efs*9 0.20 TCGA-D5-6930-01 5 140182567 140182567 C T PCDHA3 Silent p.R595R 0.28 TCGA-D5-6930-01 5 140250194 140250194 G A PCDHA11 Silent p.A502A 0.24 TCGA-D5-6930-01 5 140589895 140589895 C T PCDHB12 Silent p.S472S 0.13 TCGA-D5-6930-01 5 140767602 140767602 G A PCDHGB4 Missense_Mutation p.A51T 0.19 deleterious(0.01) possibly_damaging(0.715) TCGA-D5-6930-01 5 145536999 145536999 G A LARS Silent p.G344G 0.22 TCGA-D5-6930-01 5 1466994 1466994 C T LPCAT1 Silent p.A430A 0.29 TCGA-D5-6930-01 5 148730653 148730653 C T GRPEL2 Silent p.G162G 0.29 TCGA-D5-6930-01 5 149503911 149503911 C T PDGFRB Missense_Mutation p.S642N 0.20 deleterious(0.02) probably_damaging(0.983) TCGA-D5-6930-01 5 149602772 149602772 G A CAMK2A Missense_Mutation p.R416W 0.10 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-D5-6930-01 5 149773017 149773017 G T TCOF1 Missense_Mutation p.S1228I 0.18 deleterious(0) benign(0.346) TCGA-D5-6930-01 5 150028657 150028657 C - SYNPO Frame_Shift_Del p.S520Vfs*13 0.24 TCGA-D5-6930-01 5 153190779 153190779 A T GRIA1 Silent p.G915G 0.14 TCGA-D5-6930-01 5 153855413 153855413 G A HAND1 Missense_Mutation p.R201C 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 5 156479584 156479584 G A HAVCR1 Missense_Mutation p.T154M 0.22 tolerated(0.05) unknown(0) TCGA-D5-6930-01 5 156908743 156908743 C - ADAM19 Intron 0.08 TCGA-D5-6930-01 5 159344354 159344354 C T ADRA1B Missense_Mutation p.R148C 0.16 deleterious(0) probably_damaging(0.954) TCGA-D5-6930-01 5 159680457 159680457 G A CCNJL Silent p.C412C 0.20 TCGA-D5-6930-01 5 161324438 161324438 T C GABRA1 3'UTR 0.22 TCGA-D5-6930-01 5 161580477 161580477 C G GABRG2 3'UTR 0.15 TCGA-D5-6930-01 5 167922409 167922409 C T RARS Silent p.R223R 0.20 TCGA-D5-6930-01 5 168006326 168006326 G - PANK3 5'UTR 0.21 TCGA-D5-6930-01 5 172745183 172745183 G A STC2 Silent p.S192S 0.18 TCGA-D5-6930-01 5 175110945 175110945 G A HRH2 Missense_Mutation p.A237T 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 5 176516660 176516660 C A FGFR4 Silent p.V19V 0.08 TCGA-D5-6930-01 5 178408726 178408726 G A GRM6 Missense_Mutation p.R856W 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-D5-6930-01 5 179731846 179731846 C T GFPT2 Missense_Mutation p.V590I 0.11 tolerated(1) benign(0.034) TCGA-D5-6930-01 5 180048868 180048868 G A FLT4 Missense_Mutation p.S565F 0.21 deleterious(0) probably_damaging(0.976) TCGA-D5-6930-01 5 180277601 180277601 G T ZFP62 Silent p.V298V 0.24 TCGA-D5-6930-01 5 180374580 180374580 T - BTNL8 Frame_Shift_Del p.F249Lfs*6 0.24 TCGA-D5-6930-01 5 180486559 180486559 G A BTNL9 Silent p.P435P 0.33 TCGA-D5-6930-01 5 19483500 19483500 G A CDH18 Missense_Mutation p.R598W 0.13 deleterious(0.05) possibly_damaging(0.857) TCGA-D5-6930-01 5 24593558 24593558 T C CDH10 Silent p.V14V 0.23 TCGA-D5-6930-01 5 2749530 2749530 C T IRX2 Silent p.A207A 0.09 TCGA-D5-6930-01 5 33649063 33649063 C T ADAMTS12 Nonsense_Mutation p.W448* 0.23 TCGA-D5-6930-01 5 35955920 35955920 G A UGT3A1 Silent p.S374S 0.10 TCGA-D5-6930-01 5 3600228 3600228 G A IRX1 Missense_Mutation p.R389H 0.24 deleterious(0) benign(0.375) TCGA-D5-6930-01 5 38418258 38418258 C T EGFLAM Nonsense_Mutation p.R529* 0.17 TCGA-D5-6930-01 5 38523550 38523550 G A LIFR Missense_Mutation p.R178C 0.20 deleterious(0.03) benign(0.045) TCGA-D5-6930-01 5 41149413 41149413 T C C6 Silent p.R851R 0.28 TCGA-D5-6930-01 5 41186181 41186181 G A C6 Silent p.V239V 0.28 TCGA-D5-6930-01 5 43487069 43487070 - T C5orf34 Frame_Shift_Ins p.T622Nfs*3 0.22 TCGA-D5-6930-01 5 49695090 49695090 G A EMB 3'UTR 0.22 TCGA-D5-6930-01 5 52214576 52214576 C T ITGA1 Missense_Mutation p.A668V 0.25 deleterious(0.01) probably_damaging(0.971) TCGA-D5-6930-01 5 54529268 54529268 C T CCNO Silent p.P28P 0.10 TCGA-D5-6930-01 5 5464617 5464617 G A KIAA0947 Missense_Mutation p.A1724T 0.10 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 5 56189554 56189555 - A MAP3K1 3'UTR 0.19 TCGA-D5-6930-01 5 60827414 60827414 C T ZSWIM6 Missense_Mutation p.R703C 0.17 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 5 60839425 60839425 G A ZSWIM6 Missense_Mutation p.A977T 0.32 tolerated(0.28) possibly_damaging(0.637) TCGA-D5-6930-01 5 63509814 63509814 A G RNF180 Missense_Mutation p.T221A 0.21 tolerated(0.5) benign(0) TCGA-D5-6930-01 5 64037003 64037003 C T SREK1IP1 Missense_Mutation p.R29H 0.09 deleterious(0.01) benign(0.034) TCGA-D5-6930-01 5 65088301 65088301 C T NLN Missense_Mutation p.A449V 0.16 deleterious(0) probably_damaging(0.985) TCGA-D5-6930-01 5 6748699 6748699 G A PAPD7 Missense_Mutation p.E278K 0.19 tolerated(0.06) probably_damaging(0.95) TCGA-D5-6930-01 5 70898399 70898400 - A MCCC2 Frame_Shift_Ins p.Q153Tfs*20 0.15 TCGA-D5-6930-01 5 70939654 70939654 C T MCCC2 Nonsense_Mutation p.R361* 0.14 TCGA-D5-6930-01 5 74807440 74807440 C T COL4A3BP Intron 0.28 TCGA-D5-6930-01 5 76621420 76621420 C T PDE8B Silent p.C152C 0.29 TCGA-D5-6930-01 5 76732204 76732204 C T WDR41 Nonsense_Mutation p.W370* 0.21 TCGA-D5-6930-01 5 81608458 81608458 T C ATP6AP1L Missense_Mutation p.S54P 0.22 tolerated(0.1) benign(0.013) TCGA-D5-6930-01 5 9054219 9054219 C T SEMA5A Missense_Mutation p.C890Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-D5-6930-01 5 94619912 94619912 C T MCTP1 Missense_Mutation p.R123H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-D5-6930-01 5 94784084 94784084 G C FAM81B Missense_Mutation p.E381Q 0.21 deleterious(0.02) probably_damaging(0.928) TCGA-D5-6930-01 5 95128869 95128869 A G RHOBTB3 Silent p.L609L 0.08 TCGA-D5-6930-01 5 96244735 96244735 G A ERAP2 Missense_Mutation p.A695T 0.07 deleterious(0.03) possibly_damaging(0.461) TCGA-D5-6930-01 6 10419695 10419695 G A TFAP2A 5'Flank 0.06 TCGA-D5-6930-01 6 106634539 106634539 T - ATG5 Frame_Shift_Del p.K235Rfs*4 0.19 TCGA-D5-6930-01 6 108492750 108492750 T - NR2E1 Frame_Shift_Del p.F40Sfs*36 0.23 TCGA-D5-6930-01 6 108677932 108677932 C T LACE1 Missense_Mutation p.P186S 0.27 tolerated(0.82) benign(0.016) TCGA-D5-6930-01 6 110300886 110300886 G A GPR6 Missense_Mutation p.A191T 0.19 tolerated(0.24) benign(0.102) TCGA-D5-6930-01 6 116381181 116381181 G A FRK Silent p.G98G 0.23 TCGA-D5-6930-01 6 116833006 116833006 C A FAM26E Silent p.T49T 0.11 TCGA-D5-6930-01 6 125598251 125598251 C A HDDC2 Missense_Mutation p.A172S 0.11 tolerated(0.22) benign(0.014) TCGA-D5-6930-01 6 127796951 127796951 C T SOGA3 Silent p.S740S 0.18 TCGA-D5-6930-01 6 129813133 129813134 - G LAMA2 Frame_Shift_Ins p.A2665Cfs*4 0.11 TCGA-D5-6930-01 6 132031118 132031118 T G CTAGE9 Missense_Mutation p.K347T 0.15 deleterious(0) benign(0.238) TCGA-D5-6930-01 6 136599103 136599103 C T BCLAF1 Missense_Mutation p.A306T 0.09 tolerated(1) benign(0.001) TCGA-D5-6930-01 6 138753248 138753248 C T NHSL1 Missense_Mutation p.G749D 0.20 deleterious(0) probably_damaging(0.918) TCGA-D5-6930-01 6 138753850 138753850 G A NHSL1 Silent p.G548G 0.15 TCGA-D5-6930-01 6 144782471 144782471 A - UTRN Frame_Shift_Del p.K951Rfs*32 0.12 TCGA-D5-6930-01 6 146351142 146351142 C A GRM1 Silent p.G163G 0.22 TCGA-D5-6930-01 6 147049869 147049869 C G ADGB Missense_Mutation p.H838D 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-D5-6930-01 6 149342592 149342592 C T UST Silent p.G304G 0.20 TCGA-D5-6930-01 6 149854709 149854709 C A PPIL4 Missense_Mutation p.S188I 0.31 deleterious(0.02) benign(0.334) TCGA-D5-6930-01 6 151121862 151121862 G A PLEKHG1 Missense_Mutation p.A213T 0.22 deleterious(0) probably_damaging(0.988) TCGA-D5-6930-01 6 151239762 151239762 G A MTHFD1L Silent p.E314E 0.22 TCGA-D5-6930-01 6 151686773 151686773 A - ZBTB2 Frame_Shift_Del p.F476Lfs*3 0.18 TCGA-D5-6930-01 6 151936774 151936775 - A CCDC170 Frame_Shift_Ins p.S639Ifs*34 0.19 TCGA-D5-6930-01 6 152674858 152674858 C T SYNE1 Missense_Mutation p.A3650T 0.12 benign(0.001) TCGA-D5-6930-01 6 152770700 152770700 C T SYNE1 Missense_Mutation p.A1158T 0.12 benign(0.004) TCGA-D5-6930-01 6 152776582 152776582 C A SYNE1 Missense_Mutation p.E957D 0.14 possibly_damaging(0.607) TCGA-D5-6930-01 6 153073304 153073304 G T VIP Intron 0.27 TCGA-D5-6930-01 6 153311147 153311147 C T MTRF1L Silent p.T342T 0.15 TCGA-D5-6930-01 6 155465827 155465827 G A TIAM2 Missense_Mutation p.S573N 0.20 deleterious(0) possibly_damaging(0.829) TCGA-D5-6930-01 6 157150512 157150512 G A ARID1B Missense_Mutation p.R565Q 0.21 probably_damaging(0.987) TCGA-D5-6930-01 6 158567859 158567859 G A SERAC1 Nonsense_Mutation p.R148* 0.14 TCGA-D5-6930-01 6 159657256 159657256 G A FNDC1 Missense_Mutation p.G1326D 0.21 deleterious(0) unknown(0) TCGA-D5-6930-01 6 159660605 159660605 C T FNDC1 Nonsense_Mutation p.R1413* 0.30 TCGA-D5-6930-01 6 159687196 159687196 C T FNDC1 Missense_Mutation p.R1789C 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 6 160483603 160483603 G A IGF2R Missense_Mutation p.V1208M 0.24 deleterious(0.01) possibly_damaging(0.48) TCGA-D5-6930-01 6 165715613 165715613 G - C6orf118 Frame_Shift_Del p.N67Tfs*39 0.14 TCGA-D5-6930-01 6 166571895 166571895 C T T Missense_Mutation p.A406T 0.24 tolerated(0.88) benign(0.002) TCGA-D5-6930-01 6 168445627 168445627 G A KIF25 Missense_Mutation p.R369Q 0.18 deleterious(0.04) possibly_damaging(0.63) TCGA-D5-6930-01 6 168711106 168711106 C T DACT2 Missense_Mutation p.G134S 0.28 deleterious(0.03) probably_damaging(0.91) TCGA-D5-6930-01 6 17292140 17292140 C T RBM24 Silent p.A167A 0.26 TCGA-D5-6930-01 6 17675498 17675499 - T NUP153 Frame_Shift_Ins p.P229Tfs*22 0.18 TCGA-D5-6930-01 6 17849677 17849677 G A KIF13A Missense_Mutation p.A254V 0.26 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 6 24706312 24706312 A - C6orf62 3'UTR 0.18 TCGA-D5-6930-01 6 25110235 25110235 G A CMAHP RNA 0.16 TCGA-D5-6930-01 6 25862651 25862651 C A SLC17A3 Missense_Mutation p.R38L 0.21 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 6 26108126 26108126 G A HIST1H1T Missense_Mutation p.L66F 0.15 deleterious(0.01) probably_damaging(0.925) TCGA-D5-6930-01 6 26189055 26189055 C T HIST1H4D Missense_Mutation p.A84T 0.13 tolerated(0.07) benign(0.221) TCGA-D5-6930-01 6 27834929 27834929 C T HIST1H1B Missense_Mutation p.G127S 0.29 tolerated(0.42) unknown(0) TCGA-D5-6930-01 6 28228045 28228045 C T NKAPL Missense_Mutation p.A299V 0.23 deleterious(0.02) probably_damaging(0.928) TCGA-D5-6930-01 6 29408055 29408055 G A OR10C1 Missense_Mutation p.R88Q 0.28 tolerated(0.21) benign(0) TCGA-D5-6930-01 6 29796495 29796495 G A HLA-G Silent p.A173A 0.18 TCGA-D5-6930-01 6 30679495 30679495 C A MDC1 Missense_Mutation p.D693Y 0.35 deleterious(0) probably_damaging(0.993) TCGA-D5-6930-01 6 30691166 30691166 C T TUBB Silent p.G109G 0.22 TCGA-D5-6930-01 6 31129652 31129652 C A TCF19 Silent p.R223R 0.12 TCGA-D5-6930-01 6 31323308 31323308 G T HLA-B Nonsense_Mutation p.C227* 0.19 TCGA-D5-6930-01 6 32021302 32021302 G A TNXB Missense_Mutation p.P2883L 0.24 possibly_damaging(0.851) TCGA-D5-6930-01 6 32025835 32025835 C A TNXB Nonsense_Mutation p.E2609* 0.23 TCGA-D5-6930-01 6 32117115 32117115 G A PRRT1 Missense_Mutation p.R269W 0.21 deleterious(0) probably_damaging(0.995) TCGA-D5-6930-01 6 32171623 32171623 C A NOTCH4 Missense_Mutation p.S1052I 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-D5-6930-01 6 33179125 33179125 G - RING1 Frame_Shift_Del p.G217Efs*68 0.20 TCGA-D5-6930-01 6 34256677 34256677 G A NUDT3 Silent p.D124D 0.14 TCGA-D5-6930-01 6 35260757 35260757 C T ZNF76 Missense_Mutation p.A422V 0.33 tolerated(0.13) benign(0.116) TCGA-D5-6930-01 6 35479516 35479516 C T TULP1 Silent p.T86T 0.13 TCGA-D5-6930-01 6 4125501 4125501 C T ECI2 Missense_Mutation p.V260M 0.20 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 6 41658961 41658961 C T TFEB 5'UTR 0.11 TCGA-D5-6930-01 6 41738951 41738951 C T FRS3 Nonsense_Mutation p.W295* 0.25 TCGA-D5-6930-01 6 41903826 41903826 T C CCND3 Missense_Mutation p.Q244R 0.25 deleterious(0) probably_damaging(0.991) TCGA-D5-6930-01 6 42044856 42044856 A G TAF8 Missense_Mutation p.K267E 0.20 tolerated(0.24) possibly_damaging(0.467) TCGA-D5-6930-01 6 42045332 42045332 G A TAF8 3'UTR 0.33 TCGA-D5-6930-01 6 42559960 42559960 G A UBR2 Missense_Mutation p.R137Q 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-D5-6930-01 6 43006380 43006380 C T CUL7 Missense_Mutation p.M1581I 0.15 deleterious(0.03) benign(0.001) TCGA-D5-6930-01 6 43160851 43160851 C T CUL9 Missense_Mutation p.R765W 0.19 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 6 44114623 44114623 G A TMEM63B Silent p.P274P 0.20 TCGA-D5-6930-01 6 44971504 44971504 C T SUPT3H Silent p.A141A 0.23 TCGA-D5-6930-01 6 46190910 46190910 G A RCAN2 Missense_Mutation p.R234C 0.14 tolerated(0.16) probably_damaging(0.992) TCGA-D5-6930-01 6 49456146 49456146 G A CENPQ Missense_Mutation p.A187T 0.12 tolerated(0.72) benign(0.008) TCGA-D5-6930-01 6 49582527 49582527 G A RHAG Missense_Mutation p.S227L 0.14 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 6 49754389 49754389 C T PGK2 Missense_Mutation p.R171H 0.13 deleterious(0) probably_damaging(0.991) TCGA-D5-6930-01 6 50683211 50683211 G A TFAP2D Missense_Mutation p.R141H 0.23 deleterious(0) benign(0.108) TCGA-D5-6930-01 6 56342156 56342156 G A DST Missense_Mutation p.A4598V 0.22 probably_damaging(0.999) TCGA-D5-6930-01 6 65300222 65300222 C T EYS Silent p.V1846V 0.21 TCGA-D5-6930-01 6 72596775 72596775 C - RIMS1 Frame_Shift_Del p.M19Cfs*7 0.18 TCGA-D5-6930-01 6 72892048 72892048 C T RIMS1 Missense_Mutation p.R292C 0.24 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 6 73000416 73000416 G A RIMS1 Missense_Mutation p.A1197T 0.11 tolerated(0.16) benign(0.109) TCGA-D5-6930-01 6 73102486 73102486 G A RIMS1 Missense_Mutation p.R1531H 0.16 deleterious(0) probably_damaging(0.988) TCGA-D5-6930-01 6 73787084 73787085 - A KCNQ5 Frame_Shift_Ins p.T221Nfs*4 0.19 TCGA-D5-6930-01 6 74351590 74351590 A - SLC17A5 Frame_Shift_Del p.Y117Mfs*17 0.20 TCGA-D5-6930-01 6 74520783 74520783 C T CD109 Silent p.I1205I 0.22 TCGA-D5-6930-01 6 75829105 75829105 G T COL12A1 Missense_Mutation p.L2391I 0.08 probably_damaging(0.998) TCGA-D5-6930-01 6 79912028 79912028 C T HMGN3 Missense_Mutation p.A76T 0.09 tolerated(0.68) benign(0) TCGA-D5-6930-01 6 80383444 80383444 C - SH3BGRL2 Frame_Shift_Del p.P55Rfs*41 0.20 TCGA-D5-6930-01 6 82900887 82900887 T - IBTK Frame_Shift_Del p.M1160* 0.11 TCGA-D5-6930-01 6 94120795 94120795 G A EPHA7 Missense_Mutation p.R86W 0.22 deleterious(0) probably_damaging(0.977) TCGA-D5-6930-01 6 99739592 99739592 G A FAXC Missense_Mutation p.R310W 0.22 deleterious(0) possibly_damaging(0.764) TCGA-D5-6930-01 7 100084702 100084702 C T NYAP1 Silent p.S109S 0.18 TCGA-D5-6930-01 7 100385720 100385720 G A ZAN Missense_Mutation p.G2396S 0.18 unknown(0) TCGA-D5-6930-01 7 101925135 101925135 C T SH2B2 5'Flank 0.19 TCGA-D5-6930-01 7 103138353 103138353 C T RELN Missense_Mutation p.R2955H 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-D5-6930-01 7 105111289 105111289 T - PUS7 Frame_Shift_Del p.K415Rfs*43 0.20 TCGA-D5-6930-01 7 105664885 105664885 T C CDHR3 Missense_Mutation p.V712A 0.17 deleterious(0) possibly_damaging(0.81) TCGA-D5-6930-01 7 107432333 107432333 T A SLC26A3 Silent p.A108A 0.27 TCGA-D5-6930-01 7 11022157 11022157 T C PHF14 Missense_Mutation p.S91P 0.21 tolerated_low_confidence(0.09) benign(0.184) TCGA-D5-6930-01 7 110762736 110762736 G C LRRN3 5'UTR 0.15 TCGA-D5-6930-01 7 110762941 110762941 G T LRRN3 Missense_Mutation p.R38M 0.25 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 7 110764516 110764516 C T LRRN3 Missense_Mutation p.S563F 0.10 tolerated(0.16) benign(0.003) TCGA-D5-6930-01 7 110764637 110764637 A - LRRN3 Frame_Shift_Del p.K605Nfs*3 0.15 TCGA-D5-6930-01 7 114562678 114562678 G - MDFIC Frame_Shift_Del p.G71Dfs*82 0.10 TCGA-D5-6930-01 7 117003505 117003505 A - ASZ1 3'UTR 0.64 TCGA-D5-6930-01 7 119915363 119915363 C T KCND2 Missense_Mutation p.A226V 0.20 tolerated(0.06) benign(0.008) TCGA-D5-6930-01 7 120428947 120428947 C T TSPAN12 Missense_Mutation p.C206Y 0.10 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 7 120906808 120906808 G A CPED1 Missense_Mutation p.G860D 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 7 121624028 121624028 T - PTPRZ1 Frame_Shift_Del p.C264Vfs*14 0.20 TCGA-D5-6930-01 7 121650631 121650631 G A PTPRZ1 Missense_Mutation p.A511T 0.23 tolerated(0.28) benign(0.05) TCGA-D5-6930-01 7 121653879 121653879 C A PTPRZ1 Missense_Mutation p.F1593L 0.13 tolerated(0.2) benign(0.002) TCGA-D5-6930-01 7 123302969 123302969 T C LMOD2 Silent p.P443P 0.23 TCGA-D5-6930-01 7 124482914 124482914 C T POT1 Silent p.K370K 0.20 TCGA-D5-6930-01 7 127233859 127233859 G - FSCN3 5'UTR 0.29 TCGA-D5-6930-01 7 127991179 127991179 G A PRRT4 Missense_Mutation p.R811W 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6930-01 7 127991189 127991189 G A PRRT4 Silent p.C807C 0.34 TCGA-D5-6930-01 7 128097688 128097688 G T HILPDA 3'UTR 0.21 TCGA-D5-6930-01 7 128434779 128434779 C T CCDC136 Silent p.A101A 0.16 TCGA-D5-6930-01 7 128852004 128852004 C - SMO Frame_Shift_Del p.P694Lfs*82 0.28 TCGA-D5-6930-01 7 131872279 131872279 C T PLXNA4 Missense_Mutation p.G982R 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 7 131887415 131887415 C T PLXNA4 Missense_Mutation p.R859H 0.33 deleterious(0.03) possibly_damaging(0.795) TCGA-D5-6930-01 7 136912607 136912607 A - PTN 3'UTR 0.13 TCGA-D5-6930-01 7 137304579 137304579 C A DGKI Missense_Mutation p.K328N 0.11 tolerated(0.06) possibly_damaging(0.711) TCGA-D5-6930-01 7 138603472 138603472 C T KIAA1549 Silent p.P300P 0.21 TCGA-D5-6930-01 7 138732537 138732537 C T ZC3HAV1 Missense_Mutation p.V838I 0.14 tolerated(1) benign(0.001) TCGA-D5-6930-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.18 deleterious(0) probably_damaging(0.967) TCGA-D5-6930-01 7 142723591 142723591 G A OR9A2 Missense_Mutation p.T210M 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-D5-6930-01 7 144097289 144097289 C - NOBOX Frame_Shift_Del p.A321Pfs*27 0.23 TCGA-D5-6930-01 7 148801346 148801346 C T ZNF425 Silent p.A539A 0.19 TCGA-D5-6930-01 7 149129666 149129666 C T ZNF777 Missense_Mutation p.R566H 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6930-01 7 149500574 149500574 C - SSPO RNA 0.17 TCGA-D5-6930-01 7 150270136 150270136 C A GIMAP4 Missense_Mutation p.F326L 0.16 tolerated(0.05) benign(0.154) TCGA-D5-6930-01 7 150417675 150417675 C T GIMAP1 Missense_Mutation p.R195W 0.13 deleterious(0.02) benign(0.032) TCGA-D5-6930-01 7 150715073 150715073 C T ATG9B Missense_Mutation p.R646H 0.11 deleterious(0.05) benign(0.016) TCGA-D5-6930-01 7 151947972 151947972 G A KMT2C Silent p.N567N 0.09 TCGA-D5-6930-01 7 154862922 154862922 C T HTR5A-AS1 Missense_Mutation p.R31H 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-D5-6930-01 7 157449134 157449134 C A PTPRN2 Missense_Mutation p.S704I 0.16 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 7 1887223 1887223 G A AC110781.3 Silent p.P156P 0.19 TCGA-D5-6930-01 7 195601 195601 C T FAM20C Missense_Mutation p.A218V 0.43 tolerated(0.33) benign(0.003) TCGA-D5-6930-01 7 21640460 21640460 G A DNAH11 Missense_Mutation p.G1056D 0.19 possibly_damaging(0.519) TCGA-D5-6930-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.15 TCGA-D5-6930-01 7 2262358 2262358 G A MAD1L1 Missense_Mutation p.T108M 0.13 tolerated(0.09) benign(0.327) TCGA-D5-6930-01 7 22985434 22985434 G A FAM126A Missense_Mutation p.A447V 0.20 deleterious(0.01) benign(0.085) TCGA-D5-6930-01 7 23808683 23808683 A T STK31 Nonsense_Mutation p.K496* 0.11 TCGA-D5-6930-01 7 24325017 24325017 G A NPY Missense_Mutation p.R53Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 7 26404110 26404110 T - SNX10 Intron 0.18 TCGA-D5-6930-01 7 27239021 27239021 T C HOXA13 Missense_Mutation p.K226E 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6930-01 7 37780630 37780630 G A GPR141 Missense_Mutation p.R212H 0.25 tolerated(0.27) benign(0.04) TCGA-D5-6930-01 7 37956057 37956057 C T SFRP4 Missense_Mutation p.R28H 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-D5-6930-01 7 39730063 39730063 T A RALA Missense_Mutation p.I66N 0.09 deleterious(0) probably_damaging(0.976) TCGA-D5-6930-01 7 40173900 40173900 G T MPLKIP Silent p.S89S 0.20 TCGA-D5-6930-01 7 42972091 42972091 C T MRPL32 Missense_Mutation p.P36S 0.24 tolerated(0.51) benign(0.003) TCGA-D5-6930-01 7 43503349 43503349 C T HECW1 Silent p.G914G 0.12 TCGA-D5-6930-01 7 43906545 43906545 G A MRPS24 Missense_Mutation p.T86M 0.36 deleterious(0.04) probably_damaging(0.92) TCGA-D5-6930-01 7 44118352 44118352 T C POLM Missense_Mutation p.Y234C 0.36 deleterious(0) possibly_damaging(0.907) TCGA-D5-6930-01 7 44185128 44185128 G A GCK Silent p.G408G 0.18 TCGA-D5-6930-01 7 44573407 44573407 G A NPC1L1 Nonsense_Mutation p.R738* 0.15 TCGA-D5-6930-01 7 45122417 45122417 C T NACAD Missense_Mutation p.S1121N 0.17 tolerated(0.06) benign(0.395) TCGA-D5-6930-01 7 45724609 45724609 G A ADCY1 Missense_Mutation p.R672H 0.20 deleterious(0) probably_damaging(0.97) TCGA-D5-6930-01 7 51097231 51097231 G A COBL Missense_Mutation p.A521V 0.30 tolerated(1) benign(0.001) TCGA-D5-6930-01 7 55272980 55272980 C T EGFR Silent p.P1101P 0.22 TCGA-D5-6930-01 7 5541408 5541408 G A FBXL18 Silent p.S164S 0.28 TCGA-D5-6930-01 7 6189531 6189531 C T USP42 Silent p.N568N 0.07 TCGA-D5-6930-01 7 6189889 6189889 C T USP42 Missense_Mutation p.H688Y 0.16 tolerated(0.13) possibly_damaging(0.81) TCGA-D5-6930-01 7 64151648 64151648 T C ZNF107 5'UTR 0.24 TCGA-D5-6930-01 7 72178732 72178732 C T TYW1B Missense_Mutation p.R32H 0.16 deleterious(0) probably_damaging(0.994) TCGA-D5-6930-01 7 72413334 72413334 C T POM121 Silent p.S669S 0.09 TCGA-D5-6930-01 7 72658678 72658678 T - GTF2IRD2P1 RNA 0.25 TCGA-D5-6930-01 7 73938444 73938444 G A GTF2IRD1 Silent p.T382T 0.10 TCGA-D5-6930-01 7 76634931 76634931 C A UPK3B Intron 0.18 TCGA-D5-6930-01 7 813703 813703 C T HEATR2 Silent p.L650L 0.13 TCGA-D5-6930-01 7 81388044 81388045 - T HGF Frame_Shift_Ins p.E111Rfs*5 0.17 TCGA-D5-6930-01 7 81594923 81594923 T A CACNA2D1 Missense_Mutation p.D854V 0.27 deleterious(0) benign(0.334) TCGA-D5-6930-01 7 81978884 81978884 A C CACNA2D1 Missense_Mutation p.D59E 0.32 tolerated(1) benign(0.003) TCGA-D5-6930-01 7 82585368 82585368 T A PCLO Missense_Mutation p.D1634V 0.20 unknown(0) TCGA-D5-6930-01 7 82784430 82784430 G T PCLO Silent p.P509P 0.26 TCGA-D5-6930-01 7 84694772 84694772 C T SEMA3D Missense_Mutation p.R229K 0.20 deleterious(0.03) benign(0.156) TCGA-D5-6930-01 7 87179179 87179179 C T ABCB1 Missense_Mutation p.M514I 0.11 deleterious(0.01) benign(0.142) TCGA-D5-6930-01 7 92838012 92838012 C T HEPACAM2 Missense_Mutation p.R298H 0.18 tolerated(0.5) benign(0.001) TCGA-D5-6930-01 7 94935631 94935631 T C PON1 Missense_Mutation p.E249G 0.31 deleterious(0) probably_damaging(0.957) TCGA-D5-6930-01 7 96651624 96651624 C T DLX5 Missense_Mutation p.R138H 0.15 deleterious(0) benign(0.185) TCGA-D5-6930-01 7 97860574 97860574 G A TECPR1 Missense_Mutation p.R696C 0.28 tolerated(0.05) benign(0.028) TCGA-D5-6930-01 7 98524790 98524790 C T TRRAP Silent p.N992N 0.23 TCGA-D5-6930-01 7 99950686 99950686 C T PILRB 5'UTR 0.33 TCGA-D5-6930-01 7 99965086 99965086 C A PILRB 3'UTR 0.30 TCGA-D5-6930-01 7 99998845 99998845 G A ZCWPW1 Missense_Mutation p.A580V 0.15 tolerated_low_confidence(0.23) benign(0.009) TCGA-D5-6930-01 8 100520072 100520072 G A VPS13B Missense_Mutation p.R1411H 0.26 tolerated(0.24) benign(0.171) TCGA-D5-6930-01 8 100832164 100832164 T A VPS13B Missense_Mutation p.S2961R 0.20 deleterious(0.04) benign(0.307) TCGA-D5-6930-01 8 101076169 101076169 T C RGS22 Missense_Mutation p.E276G 0.30 tolerated(0.07) possibly_damaging(0.662) TCGA-D5-6930-01 8 102731740 102731741 - G NCALD Frame_Shift_Ins p.S40Qfs*10 0.13 TCGA-D5-6930-01 8 110542340 110542340 G T PKHD1L1 3'UTR 0.20 TCGA-D5-6930-01 8 113246662 113246662 G A CSMD3 Missense_Mutation p.L3558F 0.23 deleterious(0.03) benign(0.001) TCGA-D5-6930-01 8 116426544 116426544 T G TRPS1 Missense_Mutation p.T1198P 0.16 tolerated_low_confidence(0.12) benign(0.23) TCGA-D5-6930-01 8 117869654 117869654 G A RAD21 Silent p.D180D 0.19 TCGA-D5-6930-01 8 11831608 11831608 A G DEFB136 Silent p.N25N 0.25 TCGA-D5-6930-01 8 121262981 121262981 G A COL14A1 Missense_Mutation p.A910T 0.26 deleterious(0.01) possibly_damaging(0.544) TCGA-D5-6930-01 8 139833539 139833539 C A COL22A1 Missense_Mutation p.R362L 0.26 unknown(0) TCGA-D5-6930-01 8 140631015 140631016 - C KCNK9 Frame_Shift_Ins p.D204Gfs*21 0.12 TCGA-D5-6930-01 8 140715240 140715240 G A KCNK9 5'UTR 0.31 TCGA-D5-6930-01 8 144522513 144522513 C T ZC3H3 Missense_Mutation p.R838H 0.26 deleterious(0.02) benign(0.091) TCGA-D5-6930-01 8 145579783 145579783 G A FBXL6 Silent p.C439C 0.32 TCGA-D5-6930-01 8 145745670 145745670 T C LRRC14 Silent p.G126G 0.44 TCGA-D5-6930-01 8 18725258 18725258 G A PSD3 Silent p.G520G 0.19 TCGA-D5-6930-01 8 21984597 21984597 G A HR Missense_Mutation p.S453L 0.25 tolerated(0.16) benign(0.005) TCGA-D5-6930-01 8 22054259 22054260 - C BMP1 Frame_Shift_Ins p.N614Qfs*21 0.28 TCGA-D5-6930-01 8 22066962 22066962 C T BMP1 Silent p.C860C 0.15 TCGA-D5-6930-01 8 22864365 22864365 G A RHOBTB2 Missense_Mutation p.A225T 0.09 deleterious(0) probably_damaging(0.996) TCGA-D5-6930-01 8 23177490 23177490 A C LOXL2 Missense_Mutation p.W460G 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 8 24333967 24333967 C T ADAM7 Missense_Mutation p.H219Y 0.27 tolerated(1) benign(0.037) TCGA-D5-6930-01 8 24813967 24813967 C T CTD-2168K21.2 5'Flank 0.10 TCGA-D5-6930-01 8 27097389 27097389 C T STMN4 Intron 0.22 TCGA-D5-6930-01 8 28196699 28196699 C T PNOC Missense_Mutation p.S90L 0.28 deleterious(0.03) benign(0.242) TCGA-D5-6930-01 8 28573612 28573612 G A EXTL3 Silent p.A12A 0.20 TCGA-D5-6930-01 8 29963314 29963314 C A LEPROTL1 Intron 0.28 TCGA-D5-6930-01 8 30416407 30416407 C T RBPMS Missense_Mutation p.R178C 0.25 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-D5-6930-01 8 38848876 38848876 C T TM2D2 Missense_Mutation p.G207D 0.12 tolerated(0.23) benign(0.094) TCGA-D5-6930-01 8 39782875 39782875 C T IDO1 Nonsense_Mutation p.Q281* 0.28 TCGA-D5-6930-01 8 41552851 41552851 T G ANK1 Splice_Site p.X1028_splice 0.14 TCGA-D5-6930-01 8 41798495 41798495 C T KAT6A Silent p.R968R 0.11 TCGA-D5-6930-01 8 42038150 42038150 G A PLAT Missense_Mutation p.L315F 0.15 tolerated(0.09) benign(0.089) TCGA-D5-6930-01 8 42233252 42233252 G A DKK4 Missense_Mutation p.R70W 0.22 deleterious(0) probably_damaging(0.991) TCGA-D5-6930-01 8 42294595 42294595 C A SLC20A2 Missense_Mutation p.D479Y 0.16 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 8 42403925 42403925 T C SMIM19 Splice_Site p.X87_splice 0.25 TCGA-D5-6930-01 8 53045828 53045828 G A ST18 Silent p.H778H 0.31 TCGA-D5-6930-01 8 55533978 55533978 G A RP1 Missense_Mutation p.R151H 0.39 tolerated(0.13) possibly_damaging(0.886) TCGA-D5-6930-01 8 55539136 55539137 - A RP1 Frame_Shift_Ins p.P901Tfs*2 0.22 TCGA-D5-6930-01 8 64099479 64099479 C T YTHDF3 Missense_Mutation p.P303S 0.20 tolerated(0.05) possibly_damaging(0.803) TCGA-D5-6930-01 8 66992738 66992738 T A DNAJC5B Missense_Mutation p.S154T 0.25 tolerated(0.1) possibly_damaging(0.776) TCGA-D5-6930-01 8 67064625 67064625 A T TRIM55 Missense_Mutation p.E333D 0.33 tolerated(0.2) benign(0.002) TCGA-D5-6930-01 8 68115406 68115406 A - ARFGEF1 Frame_Shift_Del p.F1680Lfs*8 0.24 TCGA-D5-6930-01 8 70536301 70536301 T G SULF1 Missense_Mutation p.I573M 0.19 tolerated(0.16) benign(0.039) TCGA-D5-6930-01 8 70982069 70982069 G A PRDM14 Silent p.A9A 0.17 TCGA-D5-6930-01 8 72756399 72756399 C T MSC Silent p.S5S 0.29 TCGA-D5-6930-01 8 73850411 73850412 - A KCNB2 3'UTR 0.25 TCGA-D5-6930-01 8 77766498 77766498 G T ZFHX4 Missense_Mutation p.Q2447H 0.30 benign(0.115) TCGA-D5-6930-01 8 77776583 77776583 C T ZFHX4 Missense_Mutation p.P3545S 0.24 probably_damaging(0.994) TCGA-D5-6930-01 8 8561507 8561507 G T CLDN23 3'UTR 0.27 TCGA-D5-6930-01 8 88885201 88885201 G A DCAF4L2 Silent p.G333G 0.13 TCGA-D5-6930-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.18 TCGA-D5-6930-01 8 97847246 97847246 A G CPQ Missense_Mutation p.Q160R 0.09 tolerated(0.44) benign(0.001) TCGA-D5-6930-01 8 98289539 98289539 C T TSPYL5 Silent p.S178S 0.19 TCGA-D5-6930-01 9 101216294 101216294 G A GABBR2 Missense_Mutation p.A402V 0.24 tolerated(0.07) possibly_damaging(0.48) TCGA-D5-6930-01 9 101546335 101546335 G A ANKS6 Nonsense_Mutation p.Q338* 0.14 TCGA-D5-6930-01 9 101585613 101585613 G A GALNT12 Nonsense_Mutation p.W149* 0.20 TCGA-D5-6930-01 9 107360751 107360751 T - OR13C5 Frame_Shift_Del p.N315Ifs*6 0.20 TCGA-D5-6930-01 9 107457163 107457163 A G OR13D1 Missense_Mutation p.H154R 0.27 tolerated(1) benign(0) TCGA-D5-6930-01 9 117139235 117139235 C T AKNA Silent p.T284T 0.12 TCGA-D5-6930-01 9 119460457 119460457 C T TRIM32 Missense_Mutation p.R146C 0.11 tolerated(0.09) benign(0.028) TCGA-D5-6930-01 9 121929640 121929640 G A BRINP1 Missense_Mutation p.R670C 0.17 deleterious(0) possibly_damaging(0.454) TCGA-D5-6930-01 9 123201840 123201840 C T CDK5RAP2 Missense_Mutation p.G1187S 0.09 tolerated(0.18) benign(0.01) TCGA-D5-6930-01 9 123220848 123220848 G A CDK5RAP2 Missense_Mutation p.T752M 0.20 tolerated(0.27) probably_damaging(0.985) TCGA-D5-6930-01 9 125240201 125240201 C T OR1J1 Missense_Mutation p.S2N 0.25 tolerated_low_confidence(0.05) benign(0) TCGA-D5-6930-01 9 128125006 128125006 C T GAPVD1 Missense_Mutation p.T1482I 0.22 deleterious(0) probably_damaging(0.994) TCGA-D5-6930-01 9 129458248 129458248 G A LMX1B Silent p.P350P 0.21 TCGA-D5-6930-01 9 129599530 129599530 G A ZBTB43 3'UTR 0.23 TCGA-D5-6930-01 9 130425583 130425583 G A STXBP1 Missense_Mutation p.A177T 0.29 deleterious(0) possibly_damaging(0.768) TCGA-D5-6930-01 9 130551853 130551853 T - CDK9 3'UTR 0.22 TCGA-D5-6930-01 9 131223302 131223302 C - ODF2 Frame_Shift_Del p.P70Lfs*33 0.20 TCGA-D5-6930-01 9 131367424 131367424 C T SPTAN1 Silent p.G1277G 0.32 TCGA-D5-6930-01 9 131671054 131671054 C T LRRC8A Silent p.I537I 0.13 TCGA-D5-6930-01 9 133954658 133954658 G A LAMC3 Silent p.T1300T 0.16 TCGA-D5-6930-01 9 134073007 134073008 - C NUP214 Frame_Shift_Ins p.V1379Gfs*60 0.22 TCGA-D5-6930-01 9 135462784 135462784 C T BARHL1 Missense_Mutation p.R179C 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 9 135601177 135601177 C T AK8 Silent p.L446L 0.13 TCGA-D5-6930-01 9 135977043 135977043 C T RALGDS Missense_Mutation p.R773H 0.14 deleterious(0.03) unknown(0) TCGA-D5-6930-01 9 135982062 135982062 C T RALGDS Missense_Mutation p.R496H 0.16 tolerated(0.07) unknown(0) TCGA-D5-6930-01 9 136200572 136200572 G A SURF6 Silent p.I125I 0.15 TCGA-D5-6930-01 9 136287584 136287584 G T ADAMTS13 Silent p.R7R 0.35 TCGA-D5-6930-01 9 136289529 136289529 C T ADAMTS13 Silent p.A87A 0.34 TCGA-D5-6930-01 9 136910513 136910513 C T BRD3 Missense_Mutation p.A373T 0.26 tolerated(0.11) probably_damaging(0.993) TCGA-D5-6930-01 9 136916725 136916725 T C BRD3 Missense_Mutation p.K153R 0.31 tolerated(0.24) possibly_damaging(0.479) TCGA-D5-6930-01 9 137300027 137300027 C T RXRA Silent p.S104S 0.19 TCGA-D5-6930-01 9 139265325 139265325 C T CARD9 Missense_Mutation p.A199T 0.34 deleterious(0) possibly_damaging(0.905) TCGA-D5-6930-01 9 139301724 139301724 G A SDCCAG3 Missense_Mutation p.A231V 0.19 tolerated(0.06) benign(0.041) TCGA-D5-6930-01 9 139326934 139326934 C T INPP5E Missense_Mutation p.A462T 0.15 tolerated(0.46) benign(0.004) TCGA-D5-6930-01 9 139327500 139327500 C T INPP5E Missense_Mutation p.R396H 0.20 deleterious(0) probably_damaging(0.997) TCGA-D5-6930-01 9 139369186 139369186 C T SEC16A Missense_Mutation p.S961N 0.14 tolerated(0.63) benign(0.009) TCGA-D5-6930-01 9 139738876 139738876 A G C9orf172 Missense_Mutation p.T4A 0.26 deleterious(0) benign(0.388) TCGA-D5-6930-01 9 139836527 139836527 C T FBXW5 Missense_Mutation p.G356D 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 9 139973789 139973789 G A UAP1L1 Missense_Mutation p.E309K 0.11 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 9 140138724 140138724 G T FAM166A Missense_Mutation p.P255H 0.18 deleterious(0) probably_damaging(0.999) TCGA-D5-6930-01 9 140150403 140150405 CTT - NELFB In_Frame_Del p.F50del 0.24 TCGA-D5-6930-01 9 140175366 140175367 - T TOR4A 3'UTR 0.25 TCGA-D5-6930-01 9 140918129 140918129 G A CACNA1B Silent p.R978R 0.23 TCGA-D5-6930-01 9 141016046 141016046 G A CACNA1B Silent p.T2205T 0.18 TCGA-D5-6930-01 9 15744354 15744354 G A CCDC171 Silent p.S711S 0.16 TCGA-D5-6930-01 9 16419550 16419550 G A BNC2 Missense_Mutation p.R913C 0.11 deleterious(0.03) possibly_damaging(0.818) TCGA-D5-6930-01 9 17394951 17394951 G A CNTLN Silent p.A833A 0.22 TCGA-D5-6930-01 9 19376575 19376575 G A RPS6 Missense_Mutation p.R191C 0.09 tolerated(0.22) benign(0.009) TCGA-D5-6930-01 9 19786156 19786156 G A SLC24A2 Missense_Mutation p.P237S 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 9 21384875 21384875 A G IFNA2 Missense_Mutation p.Y152H 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 9 2718335 2718335 G A KCNV2 Missense_Mutation p.C199Y 0.39 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 9 2718877 2718877 C T KCNV2 Missense_Mutation p.R380C 0.21 deleterious(0) probably_damaging(1) TCGA-D5-6930-01 9 33463044 33463044 G A NOL6 Missense_Mutation p.P1093L 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-D5-6930-01 9 336697 336697 C T DOCK8 Silent p.S467S 0.22 TCGA-D5-6930-01 9 34833466 34833466 G A FAM205B RNA 0.28 TCGA-D5-6930-01 9 34835955 34835955 G A FAM205B RNA 0.13 TCGA-D5-6930-01 9 35107979 35107979 G T FAM214B Missense_Mutation p.T98N 0.15 tolerated_low_confidence(0.24) benign(0.093) TCGA-D5-6930-01 9 35679989 35679989 G A CA9 Missense_Mutation p.E402K 0.14 deleterious(0.03) benign(0.059) TCGA-D5-6930-01 9 35869498 35869498 C T OR13J1 Missense_Mutation p.A301T 0.15 deleterious(0.04) benign(0.005) TCGA-D5-6930-01 9 36105230 36105230 G A RECK Missense_Mutation p.R509Q 0.17 deleterious(0) probably_damaging(0.944) TCGA-D5-6930-01 9 36236832 36236832 C T GNE Missense_Mutation p.A287T 0.30 tolerated(0.11) possibly_damaging(0.652) TCGA-D5-6930-01 9 36276963 36276963 C A GNE 5'UTR 0.17 TCGA-D5-6930-01 9 36840603 36840603 C T PAX5 Missense_Mutation p.R377Q 0.18 deleterious_low_confidence(0.03) probably_damaging(0.993) TCGA-D5-6930-01 9 4118268 4118268 G A GLIS3 Nonsense_Mutation p.Q404* 0.31 TCGA-D5-6930-01 9 71144613 71144613 A G PGM5 3'UTR 0.19 TCGA-D5-6930-01 9 71628999 71628999 C T PRKACG Missense_Mutation p.A4T 0.17 tolerated(0.25) benign(0.002) TCGA-D5-6930-01 9 78686647 78686647 C T PCSK5 Nonsense_Mutation p.R243* 0.18 TCGA-D5-6930-01 9 79634797 79634797 G A FOXB2 Missense_Mutation p.R76Q 0.24 deleterious(0) unknown(0) TCGA-D5-6930-01 9 79840849 79840849 A - VPS13A Frame_Shift_Del p.T392Pfs*7 0.09 TCGA-D5-6930-01 9 8317940 8317940 A G PTPRD Silent p.D1891D 0.11 TCGA-D5-6930-01 9 86292864 86292864 G A UBQLN1 Missense_Mutation p.P295S 0.17 deleterious(0) probably_damaging(0.986) TCGA-D5-6930-01 9 86322496 86322496 C T UBQLN1 Silent p.E33E 0.09 TCGA-D5-6930-01 9 87322770 87322770 G A NTRK2 Missense_Mutation p.R124Q 0.21 tolerated(0.55) possibly_damaging(0.559) TCGA-D5-6930-01 9 90301593 90301593 G A DAPK1 Silent p.P784P 0.20 TCGA-D5-6930-01 9 90321475 90321475 C T DAPK1 Silent p.G1163G 0.20 TCGA-D5-6930-01 9 94171973 94171973 C T NFIL3 Silent p.T348T 0.20 TCGA-D5-6930-01 9 96080207 96080207 C - WNK2 Frame_Shift_Del p.T2267Pfs*49 0.20 TCGA-D5-6930-01 9 96318821 96318821 T C FAM120A Missense_Mutation p.L811P 0.24 deleterious(0) probably_damaging(0.919) TCGA-D5-6930-01 9 96422703 96422703 C T PHF2 Missense_Mutation p.T520M 0.23 tolerated_low_confidence(0.13) unknown(0) TCGA-D5-6930-01 9 96715266 96715266 G A BARX1 Missense_Mutation p.R143C 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-D5-6930-01 9 98268792 98268793 - T PTCH1 Frame_Shift_Ins p.N97Kfs*43 0.30 TCGA-D5-6930-01 9 99607181 99607181 C T ZNF782 Missense_Mutation p.V45I 0.26 tolerated(0.34) benign(0.016) TCGA-D5-6930-01 X 101910339 101910339 T C GPRASP1 Missense_Mutation p.S500P 0.46 deleterious(0) probably_damaging(0.917) TCGA-D5-6930-01 X 103349893 103349893 C T SLC25A53 Silent p.T16T 0.42 TCGA-D5-6930-01 X 106112744 106112744 G T TBC1D8B Nonsense_Mutation p.E948* 0.07 TCGA-D5-6930-01 X 113965848 113965848 G A HTR2C Missense_Mutation p.V61I 0.38 tolerated(0.22) benign(0.002) TCGA-D5-6930-01 X 114468566 114468566 G A LRCH2 Silent p.G13G 0.23 TCGA-D5-6930-01 X 117742269 117742269 G T DOCK11 Missense_Mutation p.A943S 0.46 tolerated(0.43) benign(0.003) TCGA-D5-6930-01 X 119246781 119246781 G A RHOXF1 Missense_Mutation p.R148W 0.32 deleterious(0) possibly_damaging(0.869) TCGA-D5-6930-01 X 120008998 120008998 C G CT47B1 Missense_Mutation p.G176A 0.42 tolerated(0.21) probably_damaging(0.992) TCGA-D5-6930-01 X 12828249 12828249 G A PRPS2 Missense_Mutation p.A175T 0.61 deleterious(0.02) probably_damaging(0.953) TCGA-D5-6930-01 X 12837763 12837763 C T PRPS2 Missense_Mutation p.A226V 0.58 tolerated(0.38) benign(0.246) TCGA-D5-6930-01 X 129480618 129480618 G A SLC25A14 Silent p.A90A 0.41 TCGA-D5-6930-01 X 129543262 129543262 C T RBMX2 Missense_Mutation p.R69W 0.23 deleterious(0.01) benign(0.235) TCGA-D5-6930-01 X 1314945 1314945 G A CRLF2 Missense_Mutation p.A239V 0.10 tolerated(1) benign(0.012) TCGA-D5-6930-01 X 132351130 132351130 C A TFDP3 Missense_Mutation p.E386D 0.34 tolerated_low_confidence(0.64) unknown(0) TCGA-D5-6930-01 X 134125307 134125307 G A SMIM10 Missense_Mutation p.R61H 0.24 tolerated(0.08) benign(0.029) TCGA-D5-6930-01 X 135313785 135313785 G A MAP7D3 Missense_Mutation p.A444V 0.32 tolerated(0.84) benign(0.006) TCGA-D5-6930-01 X 135618256 135618256 G A VGLL1 Missense_Mutation p.R26Q 0.21 tolerated(0.4) possibly_damaging(0.477) TCGA-D5-6930-01 X 142968229 142968229 A G UBE2NL 3'UTR 0.47 TCGA-D5-6930-01 X 144904117 144904118 - C SLITRK2 Frame_Shift_Ins p.Q61Pfs*35 0.35 TCGA-D5-6930-01 X 1460652 1460652 G A IL3RA 5'UTR 0.22 TCGA-D5-6930-01 X 147090213 147090213 G A FMR1NB Missense_Mutation p.R205H 0.24 deleterious(0.03) benign(0.108) TCGA-D5-6930-01 X 151130966 151130966 G A GABRE Silent p.H164H 0.10 TCGA-D5-6930-01 X 151934891 151934891 T C MAGEA3 3'UTR 0.12 TCGA-D5-6930-01 X 152037491 152037491 T C NSDHL Missense_Mutation p.I318T 0.37 tolerated(0.32) benign(0.017) TCGA-D5-6930-01 X 152913445 152913445 G A DUSP9 Missense_Mutation p.R13Q 0.52 tolerated(0.27) benign(0.001) TCGA-D5-6930-01 X 153048555 153048555 C - SRPK3 Frame_Shift_Del p.S246Pfs*4 0.59 TCGA-D5-6930-01 X 153070087 153070087 C - PDZD4 Frame_Shift_Del p.G344Afs*63 0.52 TCGA-D5-6930-01 X 153586916 153586916 C T FLNA Missense_Mutation p.V1499M 0.32 deleterious(0.03) benign(0.088) TCGA-D5-6930-01 X 154158527 154158527 C T F8 Missense_Mutation p.V1180I 0.50 tolerated(0.12) benign(0) TCGA-D5-6930-01 X 20081636 20081636 G A MAP7D2 Nonsense_Mutation p.Q90* 0.45 TCGA-D5-6930-01 X 21874824 21874824 C T YY2 Silent p.H74H 0.18 TCGA-D5-6930-01 X 22132674 22132674 T C PHEX Silent p.D424D 0.50 TCGA-D5-6930-01 X 22292423 22292424 - A ZNF645 3'UTR 0.39 TCGA-D5-6930-01 X 2609949 2609949 G - CD99 Intron 0.26 TCGA-D5-6930-01 X 2799271 2799271 C T GYG2 3'UTR 0.42 TCGA-D5-6930-01 X 2840047 2840047 C T ARSD Silent p.Q71Q 0.71 TCGA-D5-6930-01 X 30237823 30237823 A G MAGEB2 3'UTR 0.41 TCGA-D5-6930-01 X 37028734 37028734 C T FAM47C Missense_Mutation p.R751C 0.35 tolerated(0.2) probably_damaging(0.921) TCGA-D5-6930-01 X 38535027 38535027 C - TSPAN7 Frame_Shift_Del p.S173Afs*4 0.35 TCGA-D5-6930-01 X 39933013 39933013 T - BCOR Frame_Shift_Del p.N529Tfs*60 0.36 TCGA-D5-6930-01 X 48781141 48781141 C G OTUD5 Silent p.S489S 0.19 TCGA-D5-6930-01 X 49961619 49961619 C A AKAP4 Missense_Mutation p.G67C 0.32 deleterious(0.02) possibly_damaging(0.789) TCGA-D5-6930-01 X 53285098 53285098 G A IQSEC2 Missense_Mutation p.R295W 0.22 deleterious(0.02) probably_damaging(0.982) TCGA-D5-6930-01 X 54835770 54835770 T C MAGED2 Silent p.S2S 0.42 TCGA-D5-6930-01 X 57622757 57622757 C A ZXDB 3'UTR 0.23 TCGA-D5-6930-01 X 70517750 70517750 C T NONO Nonsense_Mutation p.R365* 0.15 TCGA-D5-6930-01 X 7177636 7177636 T - STS Frame_Shift_Del p.F217Sfs*6 0.36 TCGA-D5-6930-01 X 77244074 77244074 C T ATP7A Silent p.L153L 0.19 TCGA-D5-6930-01 X 77914055 77914055 G A ZCCHC5 5'UTR 0.44 TCGA-D5-6930-01 X 83351223 83351223 G A RPS6KA6 Silent p.D650D 0.16 TCGA-D5-6930-01 X 83576942 83576942 G A HDX Silent p.F676F 0.43 TCGA-D5-6930-01 X 88008993 88008993 C T CPXCR1 Missense_Mutation p.A193V 0.44 tolerated(0.35) benign(0.012) TCGA-D5-6930-01 X 90692210 90692210 C A PABPC5 3'UTR 0.45 TCGA-D5-6930-01 X 92964683 92964683 A - FAM133A Frame_Shift_Del p.R91Efs*67 0.25 TCGA-D5-6930-01 X 96212916 96212916 G A DIAPH2 Silent p.A568A 0.15 TCGA-D5-6930-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.44 TCGA-D5-6930-01 Y 21870833 21870833 C T KDM5D Silent p.L1003L 0.43 TCGA-D5-6930-01 Y 21897371 21897371 G - KDM5D Frame_Shift_Del p.P267Qfs*5 0.23 TCGA-D5-6930-01 Y 22754339 22754339 G C EIF1AY 3'UTR 0.19 TCGA-D5-6931-01 10 118030525 118030525 G A GFRA1 Missense_Mutation p.T48M 0.21 tolerated(0.05) possibly_damaging(0.77) TCGA-D5-6931-01 10 118100268 118100268 C A CCDC172 Missense_Mutation p.S63Y 0.24 tolerated(0.48) benign(0.312) TCGA-D5-6931-01 10 119003598 119003598 T C SLC18A2 Missense_Mutation p.S80P 0.08 deleterious(0.04) probably_damaging(0.985) TCGA-D5-6931-01 10 127530338 127530338 A T DHX32 Missense_Mutation p.V506E 0.16 deleterious(0) possibly_damaging(0.529) TCGA-D5-6931-01 10 15639214 15639214 C T ITGA8 Missense_Mutation p.G735R 0.19 deleterious(0.02) benign(0.247) TCGA-D5-6931-01 10 17024498 17024498 T G CUBN Missense_Mutation p.Q1560H 0.17 tolerated(0.98) benign(0.02) TCGA-D5-6931-01 10 23290860 23290860 G T ARMC3 Missense_Mutation p.G480C 0.21 deleterious(0) probably_damaging(0.988) TCGA-D5-6931-01 10 26506544 26506544 G A GAD2 Missense_Mutation p.A28T 0.24 tolerated_low_confidence(0.19) probably_damaging(0.984) TCGA-D5-6931-01 10 37508606 37508606 A C ANKRD30A Missense_Mutation p.K1266N 0.22 deleterious(0) benign(0.097) TCGA-D5-6931-01 10 37508626 37508626 A C ANKRD30A Missense_Mutation p.K1273T 0.25 deleterious(0.01) possibly_damaging(0.727) TCGA-D5-6931-01 10 50122163 50122163 A T LRRC18 Missense_Mutation p.I13N 0.20 deleterious(0) possibly_damaging(0.762) TCGA-D5-6931-01 10 59976065 59976065 T C IPMK Silent p.K129K 0.23 TCGA-D5-6931-01 10 62551790 62551790 A G CDK1 Missense_Mutation p.D211G 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-D5-6931-01 10 69991755 69991755 G C ATOH7 5'UTR 0.23 TCGA-D5-6931-01 10 7768947 7768947 T G ITIH2 Missense_Mutation p.L340R 0.25 deleterious(0) probably_damaging(0.999) TCGA-D5-6931-01 10 95152 95152 G A TUBB8 Silent p.I9I 0.27 TCGA-D5-6931-01 11 103797816 103797816 T G PDGFD Missense_Mutation p.S271R 0.24 deleterious(0) probably_damaging(0.917) TCGA-D5-6931-01 11 113103939 113103939 A C NCAM1 Missense_Mutation p.E580D 0.16 deleterious(0.04) probably_damaging(0.986) TCGA-D5-6931-01 11 117038250 117038250 C T PAFAH1B2 Silent p.T175T 0.26 TCGA-D5-6931-01 11 117651364 117651364 C T DSCAML1 Missense_Mutation p.V130M 0.26 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 11 120707510 120707510 T G GRIK4 Missense_Mutation p.L234R 0.22 deleterious(0.02) possibly_damaging(0.855) TCGA-D5-6931-01 11 121986664 121986664 T G BLID 5'UTR 0.35 TCGA-D5-6931-01 11 123508927 123508927 A T SCN3B Missense_Mutation p.V184D 0.19 deleterious(0) possibly_damaging(0.726) TCGA-D5-6931-01 11 123894331 123894331 A T OR10G9 Silent p.L204L 0.05 TCGA-D5-6931-01 11 123900636 123900636 T A OR10G8 Missense_Mutation p.F103I 0.23 deleterious(0) probably_damaging(0.91) TCGA-D5-6931-01 11 133789871 133789871 T G IGSF9B Missense_Mutation p.K1250T 0.09 deleterious_low_confidence(0.02) benign(0.382) TCGA-D5-6931-01 11 30034445 30034445 G T KCNA4 5'UTR 0.19 TCGA-D5-6931-01 11 30905018 30905018 T G DCDC1 Missense_Mutation p.K445N 0.15 tolerated_low_confidence(0.54) benign(0) TCGA-D5-6931-01 11 30928093 30928093 C A DCDC1 Silent p.V1366V 0.23 TCGA-D5-6931-01 11 55406405 55406405 A C OR4P4 Missense_Mutation p.H191P 0.29 deleterious(0.03) benign(0.033) TCGA-D5-6931-01 11 55659028 55659028 C A TRIM51 Missense_Mutation p.Q427K 0.11 tolerated(0.84) benign(0.081) TCGA-D5-6931-01 11 55681965 55681965 A G OR5W2 Silent p.L32L 0.19 TCGA-D5-6931-01 11 57798512 57798512 T G OR6Q1 Missense_Mutation p.F30V 0.19 deleterious(0.01) benign(0.049) TCGA-D5-6931-01 11 59578129 59578129 C T MRPL16 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-D5-6931-01 11 5968785 5968785 T C OR56A3 Missense_Mutation p.L70P 0.21 deleterious(0.01) benign(0.076) TCGA-D5-6931-01 11 61503084 61503084 G A DAGLA Missense_Mutation p.V394M 0.33 deleterious(0) probably_damaging(0.999) TCGA-D5-6931-01 11 62416041 62416041 C T INTS5 Missense_Mutation p.G504D 0.31 tolerated(0.29) possibly_damaging(0.714) TCGA-D5-6931-01 11 62417129 62417129 T C INTS5 Silent p.A141A 0.30 TCGA-D5-6931-01 11 74417544 74417544 C T CHRDL2 Silent p.S190S 0.16 TCGA-D5-6931-01 11 8132268 8132268 G A RIC3 Missense_Mutation p.R363C 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-D5-6931-01 11 9068984 9068984 C T SCUBE2 Missense_Mutation p.V641M 0.24 tolerated(0.17) benign(0.092) TCGA-D5-6931-01 11 9187390 9187390 C T DENND5A Missense_Mutation p.R759H 0.26 deleterious(0) probably_damaging(0.931) TCGA-D5-6931-01 12 110468551 110468551 C T ANKRD13A Nonsense_Mutation p.Q446* 0.12 TCGA-D5-6931-01 12 113307817 113307817 G A RPH3A Missense_Mutation p.A257T 0.38 tolerated(0.61) benign(0.002) TCGA-D5-6931-01 12 11545768 11545768 G C PRB2 Missense_Mutation p.P415R 0.14 unknown(0) TCGA-D5-6931-01 12 123829845 123829845 C T SBNO1 Silent p.K170K 0.40 TCGA-D5-6931-01 12 129190668 129190668 A G TMEM132C Missense_Mutation p.K1052R 0.17 deleterious(0) probably_damaging(0.944) TCGA-D5-6931-01 12 18889250 18889250 A T PLCZ1 Missense_Mutation p.F14I 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6931-01 12 1937357 1937357 G T LRTM2 Missense_Mutation p.A15S 0.16 tolerated_low_confidence(0.52) benign(0.001) TCGA-D5-6931-01 12 21997749 21997749 T G ABCC9 Missense_Mutation p.K1066T 0.16 tolerated(0.12) benign(0.05) TCGA-D5-6931-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.38 deleterious(0) benign(0.361) TCGA-D5-6931-01 12 38714632 38714632 T C ALG10B Silent p.L347L 0.21 TCGA-D5-6931-01 12 40943717 40943717 T A MUC19 3'UTR 0.22 TCGA-D5-6931-01 12 4735708 4735708 A G AKAP3 Missense_Mutation p.V787A 0.18 deleterious(0) probably_damaging(0.999) TCGA-D5-6931-01 12 48258873 48258873 G A VDR Silent p.A128A 0.14 TCGA-D5-6931-01 12 5025445 5025445 G T KCNA1 3'UTR 0.14 TCGA-D5-6931-01 12 53068963 53068963 C T KRT1 3'UTR 0.40 TCGA-D5-6931-01 12 53722912 53722912 G A SP7 Missense_Mutation p.T105I 0.53 deleterious(0.04) benign(0.001) TCGA-D5-6931-01 12 56481627 56481627 C T ERBB3 Missense_Mutation p.P221L 0.64 tolerated(0.05) possibly_damaging(0.666) TCGA-D5-6931-01 12 670633 670633 G A B4GALNT3 3'UTR 0.44 TCGA-D5-6931-01 12 6747454 6747454 G A ACRBP Silent p.F542F 0.44 TCGA-D5-6931-01 12 81283099 81283099 T G LIN7A Missense_Mutation p.E44D 0.16 tolerated(0.28) benign(0.001) TCGA-D5-6931-01 12 81738469 81738469 T G PPFIA2 Missense_Mutation p.S746R 0.14 tolerated(0.06) possibly_damaging(0.891) TCGA-D5-6931-01 13 25376590 25376590 A C RNF17 Missense_Mutation p.K610N 0.22 tolerated(0.1) probably_damaging(0.95) TCGA-D5-6931-01 13 26413729 26413729 C A ATP8A2 Missense_Mutation p.L975I 0.20 deleterious(0.03) possibly_damaging(0.902) TCGA-D5-6931-01 13 36428669 36428669 T C DCLK1 Silent p.S334S 0.16 TCGA-D5-6931-01 13 36886522 36886522 T A SPG20 Nonsense_Mutation p.K526* 0.18 TCGA-D5-6931-01 13 39262883 39262883 T C FREM2 Silent p.L468L 0.20 TCGA-D5-6931-01 13 47469780 47469780 T G HTR2A Missense_Mutation p.T88P 0.16 deleterious(0) probably_damaging(0.998) TCGA-D5-6931-01 14 101506599 101506599 C T MIR654 RNA 0.24 TCGA-D5-6931-01 14 20711866 20711866 G C OR11H4 Missense_Mutation p.D306H 0.23 deleterious(0.01) possibly_damaging(0.863) TCGA-D5-6931-01 14 23947006 23947006 C T NGDN Intron 0.26 TCGA-D5-6931-01 14 24650756 24650756 C T IPO4 Missense_Mutation p.R1003H 0.32 tolerated(0.46) benign(0.001) TCGA-D5-6931-01 14 38724534 38724534 C T CLEC14A Missense_Mutation p.G232S 0.31 tolerated(0.06) benign(0.159) TCGA-D5-6931-01 14 52194460 52194460 C T FRMD6 Intron 0.09 TCGA-D5-6931-01 14 58697129 58697129 G A ACTR10 Silent p.V267V 0.23 TCGA-D5-6931-01 14 60932751 60932751 C T C14orf39 Silent p.A306A 0.17 TCGA-D5-6931-01 14 75142626 75142626 G A AREL1 Missense_Mutation p.R286C 0.25 deleterious(0) possibly_damaging(0.549) TCGA-D5-6931-01 14 75329630 75329630 A G PROX2 Intron 0.09 TCGA-D5-6931-01 14 77844972 77844972 T C SAMD15 Missense_Mutation p.L404P 0.25 deleterious(0.05) benign(0.142) TCGA-D5-6931-01 14 94053161 94053161 A T UNC79 Missense_Mutation p.K803M 0.19 deleterious(0) probably_damaging(0.999) TCGA-D5-6931-01 14 95033573 95033573 C T SERPINA4 Missense_Mutation p.R306W 0.22 deleterious(0) possibly_damaging(0.802) TCGA-D5-6931-01 15 22332690 22332690 T C RP11-69H14.6 RNA 0.14 TCGA-D5-6931-01 15 22853712 22853712 C T TUBGCP5 Intron 0.24 TCGA-D5-6931-01 15 24925980 24925980 C A NPAP1 3'UTR 0.17 TCGA-D5-6931-01 15 25220656 25220656 A C SNRPN Missense_Mutation p.K52T 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-D5-6931-01 15 26866523 26866523 T G GABRB3 Silent p.G133G 0.22 TCGA-D5-6931-01 15 42700450 42700450 G A CAPN3 Silent p.E614E 0.32 TCGA-D5-6931-01 15 52017159 52017159 G A LYSMD2 Nonsense_Mutation p.Q145* 0.23 TCGA-D5-6931-01 15 65489691 65489691 C T CILP Missense_Mutation p.R978Q 0.29 deleterious(0.03) possibly_damaging(0.709) TCGA-D5-6931-01 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.28 tolerated(0.08) probably_damaging(0.913) TCGA-D5-6931-01 15 83805341 83805341 G A TM6SF1 Missense_Mutation p.V344I 0.25 tolerated(0.34) benign(0.003) TCGA-D5-6931-01 15 83805463 83805463 T G TM6SF1 3'UTR 0.19 TCGA-D5-6931-01 15 83926671 83926671 T G BNC1 Missense_Mutation p.Q836H 0.22 tolerated(0.06) benign(0.004) TCGA-D5-6931-01 15 88476400 88476400 T C NTRK3 Missense_Mutation p.T578A 0.23 deleterious(0.01) benign(0.06) TCGA-D5-6931-01 15 89392821 89392821 G A ACAN Missense_Mutation p.D629N 0.31 deleterious(0) unknown(0) TCGA-D5-6931-01 15 99251306 99251306 C T IGF1R Missense_Mutation p.R204C 0.16 deleterious(0) probably_damaging(0.999) TCGA-D5-6931-01 16 10868943 10868943 C G TVP23A Missense_Mutation p.A34P 0.18 deleterious(0) probably_damaging(0.974) TCGA-D5-6931-01 16 11868230 11868230 C A ZC3H7A Silent p.L255L 0.27 TCGA-D5-6931-01 16 2835130 2835130 G T PRSS33 Missense_Mutation p.P186Q 0.41 deleterious(0.01) benign(0.198) TCGA-D5-6931-01 16 51171245 51171245 C T SALL1 Silent p.E1251E 0.12 TCGA-D5-6931-01 16 57713122 57713122 G A GPR97 Missense_Mutation p.V176M 0.17 tolerated(0.07) probably_damaging(0.98) TCGA-D5-6931-01 16 67580318 67580318 C T FAM65A Silent p.A1224A 0.20 TCGA-D5-6931-01 16 68395566 68395566 G A SMPD3 Silent p.N602N 0.09 TCGA-D5-6931-01 16 72993189 72993189 A T ZFHX3 Missense_Mutation p.L286M 0.19 probably_damaging(0.969) TCGA-D5-6931-01 16 79633602 79633602 C T MAF Silent p.S66S 0.24 TCGA-D5-6931-01 16 83636065 83636065 G A CDH13 Missense_Mutation p.E370K 0.16 tolerated(0.28) benign(0.198) TCGA-D5-6931-01 16 87723740 87723740 A C JPH3 Missense_Mutation p.N592H 0.20 tolerated(0.08) benign(0.155) TCGA-D5-6931-01 16 89354972 89354972 C T ANKRD11 Silent p.T236T 0.40 TCGA-D5-6931-01 17 1003932 1003932 G A ABR Missense_Mutation p.S97L 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-D5-6931-01 17 10368887 10368887 A G MYH4 Missense_Mutation p.V126A 0.25 deleterious(0.01) possibly_damaging(0.866) TCGA-D5-6931-01 17 1381979 1381979 G A MYO1C Silent p.L381L 0.21 TCGA-D5-6931-01 17 17699400 17699400 G A RAI1 Silent p.R1046R 0.54 TCGA-D5-6931-01 17 18005258 18005258 C T DRG2 Silent p.I251I 0.24 TCGA-D5-6931-01 17 27061939 27061939 C A NEK8 Missense_Mutation p.L135M 0.20 tolerated(0.07) probably_damaging(0.967) TCGA-D5-6931-01 17 3101551 3101552 - T OR1A2 Frame_Shift_Ins p.L249Ffs*41 0.19 TCGA-D5-6931-01 17 33738648 33738648 T C SLFN12 Silent p.A482A 0.20 TCGA-D5-6931-01 17 39534379 39534379 C T KRT34 Missense_Mutation p.A415T 0.21 tolerated(0.08) benign(0.033) TCGA-D5-6931-01 17 41168047 41168047 G A VAT1 3'UTR 0.16 TCGA-D5-6931-01 17 47799882 47799882 G T FAM117A Silent p.G147G 0.25 TCGA-D5-6931-01 17 62528093 62528093 C T CEP95 Missense_Mutation p.T542M 0.23 deleterious(0.01) benign(0.441) TCGA-D5-6931-01 17 6978412 6978412 G A CLEC10A Silent p.C304C 0.24 TCGA-D5-6931-01 17 70118952 70118952 A C SOX9 Missense_Mutation p.Q175P 0.29 deleterious(0.01) benign(0.002) TCGA-D5-6931-01 17 75483503 75483503 C T SEPT9 Intron 0.19 TCGA-D5-6931-01 17 7578388 7578388 C T TP53 Missense_Mutation p.R181H 0.57 deleterious(0.02) probably_damaging(0.977) TCGA-D5-6931-01 17 78931502 78931502 G A RPTOR Nonsense_Mutation p.W1150* 0.23 TCGA-D5-6931-01 17 80007714 80007714 C T RFNG Missense_Mutation p.G223S 0.26 tolerated(0.25) probably_damaging(1) TCGA-D5-6931-01 18 10671432 10671432 G A PIEZO2 3'Flank 0.25 TCGA-D5-6931-01 18 21098857 21098857 C T C18orf8 Silent p.Y219Y 0.25 TCGA-D5-6931-01 18 25568502 25568502 A C CDH2 Missense_Mutation p.L576R 0.16 deleterious(0) benign(0.443) TCGA-D5-6931-01 18 25593717 25593717 T G CDH2 Missense_Mutation p.E110A 0.30 tolerated(0.5) benign(0.006) TCGA-D5-6931-01 18 42281544 42281544 A G SETBP1 Missense_Mutation p.E78G 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-D5-6931-01 18 65180960 65180960 G A DSEL Missense_Mutation p.R306C 0.23 deleterious(0) probably_damaging(0.999) TCGA-D5-6931-01 18 67741142 67741142 C T RTTN Silent p.T1551T 0.28 TCGA-D5-6931-01 19 14043600 14043600 C T PODNL1 Missense_Mutation p.R486K 0.21 tolerated_low_confidence(1) benign(0.039) TCGA-D5-6931-01 19 15226711 15226711 C T ILVBL Missense_Mutation p.G522R 0.28 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 19 15740124 15740124 C G CYP4F8 RNA 0.28 TCGA-D5-6931-01 19 18497268 18497268 C T GDF15 Missense_Mutation p.T90M 0.35 deleterious(0.04) possibly_damaging(0.702) TCGA-D5-6931-01 19 2110736 2110736 C T AP3D1 Missense_Mutation p.G1049S 0.26 deleterious(0.01) benign(0.212) TCGA-D5-6931-01 19 21607220 21607220 A C ZNF493 Missense_Mutation p.T587P 0.40 tolerated(0.17) possibly_damaging(0.792) TCGA-D5-6931-01 19 21607320 21607320 A G ZNF493 Missense_Mutation p.K620R 0.21 tolerated(0.2) benign(0.075) TCGA-D5-6931-01 19 22157209 22157209 A C ZNF208 Silent p.A209A 0.30 TCGA-D5-6931-01 19 22952030 22952030 A C ZNF99 Missense_Mutation p.L34V 0.27 deleterious(0.02) probably_damaging(0.979) TCGA-D5-6931-01 19 30935498 30935498 C T ZNF536 Silent p.N343N 0.11 TCGA-D5-6931-01 19 31040221 31040221 A C ZNF536 Missense_Mutation p.Q1232P 0.31 tolerated_low_confidence(0.1) benign(0.004) TCGA-D5-6931-01 19 35173742 35173742 G T ZNF302 Missense_Mutation p.A24S 0.13 tolerated(0.43) possibly_damaging(0.661) TCGA-D5-6931-01 19 35251059 35251059 C T ZNF599 Missense_Mutation p.R216Q 0.26 tolerated(0.35) benign(0.006) TCGA-D5-6931-01 19 36728079 36728079 G A ZNF146 Missense_Mutation p.G246E 0.25 deleterious(0.02) probably_damaging(0.972) TCGA-D5-6931-01 19 37310322 37310322 T G ZNF790 Missense_Mutation p.K308N 0.32 deleterious(0.01) possibly_damaging(0.533) TCGA-D5-6931-01 19 37369644 37369644 T G ZNF345 3'UTR 0.17 TCGA-D5-6931-01 19 3779036 3779036 C T MATK Missense_Mutation p.S385N 0.24 tolerated(0.1) benign(0.119) TCGA-D5-6931-01 19 37904312 37904312 T C ZNF569 Silent p.R416R 0.21 TCGA-D5-6931-01 19 42821976 42821976 G A TMEM145 Missense_Mutation p.R339Q 0.19 tolerated(0.07) possibly_damaging(0.536) TCGA-D5-6931-01 19 46005497 46005497 C T PPM1N 3'Flank 0.25 TCGA-D5-6931-01 19 50334643 50334643 A T MED25 Silent p.G385G 0.12 TCGA-D5-6931-01 19 50339043 50339043 G A MED25 Silent p.T602T 0.19 TCGA-D5-6931-01 19 51961695 51961695 T G SIGLEC8 5'UTR 0.15 TCGA-D5-6931-01 19 51986375 51986375 T G CEACAM18 Missense_Mutation p.F321V 0.24 tolerated(0.5) benign(0.001) TCGA-D5-6931-01 19 52090609 52090609 A C ZNF175 Missense_Mutation p.K342T 0.26 deleterious(0) probably_damaging(0.989) TCGA-D5-6931-01 19 5215577 5215577 C T PTPRS Missense_Mutation p.A1376T 0.25 tolerated(0.92) benign(0) TCGA-D5-6931-01 19 52376314 52376314 T G ZNF577 Missense_Mutation p.K310T 0.15 deleterious(0) probably_damaging(0.96) TCGA-D5-6931-01 19 52803654 52803654 T G ZNF480 5'UTR 0.17 TCGA-D5-6931-01 19 52887279 52887279 T G ZNF880 Missense_Mutation p.I149S 0.21 tolerated(0.08) benign(0.04) TCGA-D5-6931-01 19 52942188 52942188 A C ZNF534 Missense_Mutation p.K505T 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-D5-6931-01 19 53086623 53086623 T C ZNF701 Silent p.P503P 0.17 TCGA-D5-6931-01 19 53303060 53303060 G A ZNF28 Nonsense_Mutation p.Q680* 0.25 TCGA-D5-6931-01 19 53344377 53344377 T C ZNF468 Silent p.K390K 0.17 TCGA-D5-6931-01 19 53884848 53884848 A C ZNF525 Missense_Mutation p.K339T 0.35 tolerated(0.49) benign(0.002) TCGA-D5-6931-01 19 54629936 54629936 G A PRPF31 Missense_Mutation p.A297T 0.33 tolerated(0.08) benign(0.089) TCGA-D5-6931-01 19 56001755 56001755 C T SSC5D Missense_Mutation p.T189M 0.45 possibly_damaging(0.465) TCGA-D5-6931-01 19 56363470 56363470 T G NLRP4 Missense_Mutation p.D8E 0.18 deleterious(0.05) probably_damaging(0.962) TCGA-D5-6931-01 19 56370591 56370591 A C NLRP4 Missense_Mutation p.K611T 0.14 tolerated(0.48) benign(0.007) TCGA-D5-6931-01 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.28 deleterious(0) probably_damaging(0.993) TCGA-D5-6931-01 19 57089044 57089044 A G ZNF470 Missense_Mutation p.K416R 0.24 tolerated(0.67) probably_damaging(0.995) TCGA-D5-6931-01 19 57325004 57325004 A C PEG3 3'UTR 0.22 TCGA-D5-6931-01 19 57640585 57640585 A G USP29 Missense_Mutation p.E181G 0.15 tolerated(0.22) probably_damaging(0.922) TCGA-D5-6931-01 19 57641649 57641649 A G USP29 Missense_Mutation p.S536G 0.12 tolerated(0.1) possibly_damaging(0.752) TCGA-D5-6931-01 19 57840694 57840694 T G ZNF543 3'UTR 0.33 TCGA-D5-6931-01 19 58048997 58048997 T C ZNF549 Missense_Mutation p.Y209H 0.17 tolerated(0.54) benign(0) TCGA-D5-6931-01 19 58058240 58058240 T G ZNF550 3'UTR 0.24 TCGA-D5-6931-01 19 58146109 58146109 T C ZNF211 Missense_Mutation p.L81P 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6931-01 19 58152303 58152303 T G ZNF211 Missense_Mutation p.L215R 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-D5-6931-01 19 58439223 58439223 A G ZNF418 Missense_Mutation p.L109P 0.14 tolerated(0.22) probably_damaging(0.979) TCGA-D5-6931-01 19 58512655 58512656 - C ZNF606 Splice_Site p.X11_splice 0.19 TCGA-D5-6931-01 19 58597596 58597596 C A ZSCAN18 Silent p.L317L 0.29 TCGA-D5-6931-01 19 59023239 59023239 A G SLC27A5 Silent p.A28A 0.24 TCGA-D5-6931-01 19 8922257 8922257 C G ZNF558 Missense_Mutation p.K303N 0.23 tolerated(0.25) probably_damaging(0.977) TCGA-D5-6931-01 19 9010648 9010648 T C MUC16 Missense_Mutation p.T13005A 0.28 benign(0.117) TCGA-D5-6931-01 19 9061659 9061659 A G MUC16 Missense_Mutation p.L8596P 0.28 unknown(0) TCGA-D5-6931-01 1 10713991 10713991 G A CASZ1 Missense_Mutation p.S708L 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-D5-6931-01 1 107867459 107867459 A C NTNG1 Silent p.R268R 0.10 TCGA-D5-6931-01 1 110152777 110152777 G A GNAT2 Missense_Mutation p.P63L 0.27 tolerated(0.25) benign(0.001) TCGA-D5-6931-01 1 110931935 110931935 C T SLC16A4 Missense_Mutation p.R4K 0.32 tolerated(0.78) benign(0.001) TCGA-D5-6931-01 1 111060124 111060124 G A KCNA10 Missense_Mutation p.P429L 0.25 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 1 114500849 114500849 C T HIPK1 Silent p.T639T 0.17 TCGA-D5-6931-01 1 115596001 115596001 G A TSPAN2 Missense_Mutation p.T200M 0.18 tolerated(1) benign(0.245) TCGA-D5-6931-01 1 117516845 117516845 A G PTGFRN Missense_Mutation p.I689M 0.15 tolerated(0.07) benign(0.352) TCGA-D5-6931-01 1 12387892 12387892 C T VPS13D Silent p.L2726L 0.09 TCGA-D5-6931-01 1 14107215 14107215 C T PRDM2 Silent p.P975P 0.21 TCGA-D5-6931-01 1 154317798 154317798 C T ATP8B2 Missense_Mutation p.T857M 0.36 deleterious(0.04) possibly_damaging(0.599) TCGA-D5-6931-01 1 158151448 158151448 C A CD1D Silent p.R89R 0.47 TCGA-D5-6931-01 1 158622305 158622305 T G SPTA1 Missense_Mutation p.E1109D 0.26 tolerated(1) benign(0.032) TCGA-D5-6931-01 1 158653257 158653257 T G SPTA1 Missense_Mutation p.E98D 0.22 deleterious(0.02) benign(0.092) TCGA-D5-6931-01 1 159021809 159021809 C T IFI16 Missense_Mutation p.A613V 0.27 deleterious(0) possibly_damaging(0.86) TCGA-D5-6931-01 1 159283492 159283492 C T OR10J3 Missense_Mutation p.G320S 0.14 tolerated_low_confidence(0.3) benign(0.005) TCGA-D5-6931-01 1 160090719 160090719 C T ATP1A2 Silent p.A12A 0.31 TCGA-D5-6931-01 1 161166479 161166479 G A ADAMTS4 Silent p.G275G 0.12 TCGA-D5-6931-01 1 170115242 170115242 C T METTL11B 5'UTR 0.50 TCGA-D5-6931-01 1 171123340 171123340 A G FMO6P Missense_Mutation p.K415E 0.25 tolerated(0.13) benign(0.029) TCGA-D5-6931-01 1 175049551 175049551 T C TNN Missense_Mutation p.L346P 0.29 tolerated(0.25) possibly_damaging(0.52) TCGA-D5-6931-01 1 180243511 180243511 G A LHX4 Missense_Mutation p.A324T 0.22 tolerated(0.53) benign(0) TCGA-D5-6931-01 1 185958651 185958651 A C HMCN1 Missense_Mutation p.K1027T 0.29 probably_damaging(0.996) TCGA-D5-6931-01 1 2116473 2116473 C A PRKCZ 3'UTR 0.28 TCGA-D5-6931-01 1 213224755 213224755 T A RPS6KC1 Silent p.S3S 0.17 TCGA-D5-6931-01 1 21977895 21977895 G A RAP1GAP Intron 0.15 TCGA-D5-6931-01 1 228559787 228559787 T C OBSCN Missense_Mutation p.I8060T 0.17 benign(0.15) TCGA-D5-6931-01 1 240071380 240071380 T G CHRM3 Missense_Mutation p.F210C 0.19 deleterious(0) probably_damaging(0.92) TCGA-D5-6931-01 1 248343912 248343912 T G OR2M2 Missense_Mutation p.F209V 0.26 tolerated(0.42) possibly_damaging(0.706) TCGA-D5-6931-01 1 31654748 31654748 C T NKAIN1 Silent p.A191A 0.42 TCGA-D5-6931-01 1 36226698 36226698 T A CLSPN Nonsense_Mutation p.K335* 0.22 TCGA-D5-6931-01 1 70385015 70385015 A C LRRC7 Intron 0.31 TCGA-D5-6931-01 1 75042600 75042600 C A C1orf173 Missense_Mutation p.A733S 0.21 tolerated(0.73) benign(0.028) TCGA-D5-6931-01 1 75680342 75680342 A C SLC44A5 Missense_Mutation p.F584V 0.36 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 1 92634450 92634450 C T KIAA1107 Missense_Mutation p.R53C 0.21 deleterious(0) probably_damaging(0.995) TCGA-D5-6931-01 20 2730553 2730553 G A EBF4 Missense_Mutation p.E314K 0.40 deleterious(0.05) probably_damaging(0.976) TCGA-D5-6931-01 20 35695515 35695515 C T RBL1 Missense_Mutation p.R189Q 0.20 tolerated(0.22) possibly_damaging(0.572) TCGA-D5-6931-01 20 45131043 45131043 T C ZNF334 Missense_Mutation p.Q312R 0.23 tolerated(0.14) probably_damaging(0.973) TCGA-D5-6931-01 20 47863849 47863849 C T ZNFX1 Silent p.T1904T 0.23 TCGA-D5-6931-01 20 61958146 61958146 C T COL20A1 Nonsense_Mutation p.R1167* 0.24 TCGA-D5-6931-01 21 19770212 19770212 T C TMPRSS15 Missense_Mutation p.R110G 0.21 deleterious(0.04) benign(0.41) TCGA-D5-6931-01 21 28214791 28214791 T G ADAMTS1 Missense_Mutation p.E315A 0.33 tolerated(0.19) possibly_damaging(0.8) TCGA-D5-6931-01 21 31538806 31538806 C A CLDN17 Nonsense_Mutation p.E44* 0.33 TCGA-D5-6931-01 21 31768692 31768692 C T KRTAP13-1 Silent p.Y96Y 0.29 TCGA-D5-6931-01 21 31964882 31964882 G A KRTAP6-3 Missense_Mutation p.G33R 0.20 unknown(0) TCGA-D5-6931-01 21 43411860 43411860 C T ZBTB21 Missense_Mutation p.R782H 0.31 deleterious(0) probably_damaging(0.999) TCGA-D5-6931-01 21 47735454 47735454 C T C21orf58 Silent p.E126E 0.25 TCGA-D5-6931-01 22 17073006 17073006 G T CCT8L2 Silent p.A145A 0.32 TCGA-D5-6931-01 22 18022118 18022118 G A CECR2 Silent p.S741S 0.20 TCGA-D5-6931-01 22 20101269 20101270 CG - TRMT2A Frame_Shift_Del p.A432Gfs*46 0.36 TCGA-D5-6931-01 22 31740987 31740987 C T PATZ1 Missense_Mutation p.G201D 0.14 deleterious(0) benign(0) TCGA-D5-6931-01 22 38611517 38611517 G A MAFF 3'UTR 0.24 TCGA-D5-6931-01 22 40057121 40057121 C T CACNA1I Missense_Mutation p.L903F 0.45 tolerated(0.05) benign(0.438) TCGA-D5-6931-01 22 41533793 41533793 C T EP300 Missense_Mutation p.L587F 0.51 unknown(0) TCGA-D5-6931-01 22 45765835 45765835 T C SMC1B Missense_Mutation p.R807G 0.24 deleterious(0.02) possibly_damaging(0.783) TCGA-D5-6931-01 2 100721963 100721963 C T AFF3 Intron 0.21 TCGA-D5-6931-01 2 100915739 100915739 C T LONRF2 Missense_Mutation p.S437N 0.20 tolerated(0.49) benign(0.156) TCGA-D5-6931-01 2 108487568 108487568 C A RGPD4 Silent p.I1036I 0.23 TCGA-D5-6931-01 2 118578808 118578808 G A DDX18 Missense_Mutation p.E196K 0.23 tolerated(0.07) benign(0.005) TCGA-D5-6931-01 2 118865973 118865973 T G INSIG2 3'UTR 0.20 TCGA-D5-6931-01 2 128408921 128408921 G A GPR17 Silent p.P232P 0.14 TCGA-D5-6931-01 2 137814248 137814248 C T THSD7B Missense_Mutation p.T133M 0.25 deleterious(0.05) possibly_damaging(0.897) TCGA-D5-6931-01 2 152490431 152490431 C A NEB Missense_Mutation p.A3051S 0.30 possibly_damaging(0.699) TCGA-D5-6931-01 2 1643133 1643134 - AG PXDN Frame_Shift_Ins p.E1339Lfs*66 0.18 TCGA-D5-6931-01 2 165997225 165997225 C T SCN3A Missense_Mutation p.G652D 0.17 deleterious(0) probably_damaging(0.999) TCGA-D5-6931-01 2 166848051 166848051 G A SCN1A Nonsense_Mutation p.R1912* 0.22 TCGA-D5-6931-01 2 179437013 179437013 G A TTN Nonsense_Mutation p.R24616* 0.24 TCGA-D5-6931-01 2 179583663 179583663 T G TTN Missense_Mutation p.E8088D 0.43 TCGA-D5-6931-01 2 179588670 179588670 G T TTN Missense_Mutation p.L7106M 0.24 TCGA-D5-6931-01 2 179604548 179604549 - T TTN Frame_Shift_Ins p.M4471Nfs*4 0.19 TCGA-D5-6931-01 2 183621116 183621116 G A DNAJC10 Missense_Mutation p.E577K 0.20 deleterious(0.02) possibly_damaging(0.597) TCGA-D5-6931-01 2 189873709 189873709 T G COL3A1 Silent p.P1195P 0.25 TCGA-D5-6931-01 2 191066884 191066884 G A C2orf88 3'UTR 0.25 TCGA-D5-6931-01 2 198353780 198353780 C T HSPD1 Silent p.K387K 0.27 TCGA-D5-6931-01 2 198593106 198593106 A C BOLL 3'UTR 0.24 TCGA-D5-6931-01 2 20838202 20838202 A T HS1BP3 Missense_Mutation p.I206N 0.21 deleterious(0.04) probably_damaging(0.959) TCGA-D5-6931-01 2 21233198 21233198 A C APOB Missense_Mutation p.F2181C 0.23 probably_damaging(0.996) TCGA-D5-6931-01 2 21235275 21235275 G T APOB Missense_Mutation p.Q1489K 0.25 benign(0.012) TCGA-D5-6931-01 2 218925131 218925131 G T CXCR2P1 RNA 0.26 TCGA-D5-6931-01 2 226447545 226447545 C T NYAP2 Missense_Mutation p.S471L 0.22 deleterious(0.03) benign(0.236) TCGA-D5-6931-01 2 228882256 228882256 G A SPHKAP Missense_Mutation p.T1105M 0.30 deleterious(0.02) possibly_damaging(0.84) TCGA-D5-6931-01 2 233246041 233246041 G T ALPP Missense_Mutation p.D425Y 0.20 deleterious(0.01) benign(0.191) TCGA-D5-6931-01 2 242092905 242092905 G A PPP1R7 Missense_Mutation p.E23K 0.23 deleterious(0.01) unknown(0) TCGA-D5-6931-01 2 24524074 24524074 G C ITSN2 Missense_Mutation p.L344V 0.07 tolerated(0.29) possibly_damaging(0.868) TCGA-D5-6931-01 2 37455765 37455765 C A CEBPZ Nonsense_Mutation p.E191* 0.31 TCGA-D5-6931-01 2 68620325 68620325 A C PLEK Missense_Mutation p.K265T 0.21 tolerated(0.07) probably_damaging(1) TCGA-D5-6931-01 2 80529742 80529742 C A LRRTM1 Missense_Mutation p.Q401H 0.22 tolerated(0.14) benign(0.002) TCGA-D5-6931-01 2 80530382 80530382 T G LRRTM1 Missense_Mutation p.K188T 0.21 deleterious(0) benign(0.315) TCGA-D5-6931-01 3 11058843 11058843 C T SLC6A1 5'UTR 0.19 TCGA-D5-6931-01 3 114069503 114069503 C A ZBTB20 Missense_Mutation p.Q474H 0.23 deleterious(0.02) probably_damaging(0.948) TCGA-D5-6931-01 3 115394956 115394956 C T GAP43 Missense_Mutation p.R79C 0.24 deleterious(0) probably_damaging(0.998) TCGA-D5-6931-01 3 118865654 118865654 T G C3orf30 Silent p.T206T 0.20 TCGA-D5-6931-01 3 120412997 120412997 T C RABL3 Intron 0.21 TCGA-D5-6931-01 3 132071611 132071611 C T ACPP Silent p.N304N 0.22 TCGA-D5-6931-01 3 136729019 136729019 C T IL20RB Missense_Mutation p.T297M 0.27 tolerated(0.19) benign(0.007) TCGA-D5-6931-01 3 1427383 1427383 T C CNTN6 Missense_Mutation p.L869P 0.23 deleterious(0.01) probably_damaging(1) TCGA-D5-6931-01 3 154055980 154055980 T G GPR149 Silent p.L568L 0.24 TCGA-D5-6931-01 3 167512517 167512517 T C SERPINI1 Silent p.V262V 0.28 TCGA-D5-6931-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-D5-6931-01 3 180369320 180369320 A C CCDC39 Missense_Mutation p.L346V 0.23 tolerated(0.06) possibly_damaging(0.747) TCGA-D5-6931-01 3 18419681 18419681 A C SATB1 Missense_Mutation p.V519G 0.29 deleterious(0) probably_damaging(0.992) TCGA-D5-6931-01 3 192516715 192516715 G A MB21D2 Silent p.A312A 0.25 TCGA-D5-6931-01 3 30732969 30732969 C T TGFBR2 Missense_Mutation p.R553C 0.32 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 3 32612258 32612258 G A DYNC1LI1 Missense_Mutation p.A2V 0.42 deleterious_low_confidence(0.03) possibly_damaging(0.499) TCGA-D5-6931-01 3 44776951 44776951 C T ZNF501 3'UTR 0.27 TCGA-D5-6931-01 3 49699847 49699847 C T BSN Silent p.P3523P 0.24 TCGA-D5-6931-01 3 49756353 49756353 G A AMIGO3 Silent p.A182A 0.28 TCGA-D5-6931-01 3 51746992 51746992 G A GRM2 Silent p.E318E 0.35 TCGA-D5-6931-01 3 52734494 52734495 - A GLT8D1 5'UTR 0.33 TCGA-D5-6931-01 3 52945026 52945026 G A SFMBT1 Silent p.T633T 0.30 TCGA-D5-6931-01 3 64619467 64619467 A C ADAMTS9 Missense_Mutation p.F649V 0.19 deleterious(0) probably_damaging(0.967) TCGA-D5-6931-01 4 123854602 123854602 A T SPATA5 Missense_Mutation p.D152V 0.19 deleterious(0) probably_damaging(0.915) TCGA-D5-6931-01 4 126336828 126336828 C T FAT4 Missense_Mutation p.T2237I 0.23 benign(0.351) TCGA-D5-6931-01 4 138451988 138451988 T G PCDH18 Missense_Mutation p.T419P 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.22 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 4 155157578 155157578 A C DCHS2 Silent p.A2287A 0.24 TCGA-D5-6931-01 4 158233974 158233974 C T GRIA2 Missense_Mutation p.R205W 0.09 deleterious(0) possibly_damaging(0.883) TCGA-D5-6931-01 4 158262422 158262422 C T GRIA2 Silent p.L617L 0.25 TCGA-D5-6931-01 4 15850430 15850430 A T CD38 3'UTR 0.25 TCGA-D5-6931-01 4 170511883 170511883 T A NEK1 Missense_Mutation p.K130N 0.17 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 4 188925059 188925059 G C ZFP42 3'UTR 0.21 TCGA-D5-6931-01 4 2306717 2306717 G A ZFYVE28 Silent p.P450P 0.22 TCGA-D5-6931-01 4 38830063 38830063 T C TLR6 Missense_Mutation p.I344M 0.26 tolerated(0.21) benign(0.094) TCGA-D5-6931-01 4 41748296 41748296 C T PHOX2B Missense_Mutation p.R158H 0.28 deleterious(0) unknown(0) TCGA-D5-6931-01 4 48173426 48173426 C A TEC Missense_Mutation p.S95I 0.22 deleterious(0) possibly_damaging(0.481) TCGA-D5-6931-01 4 55955084 55955084 G T KDR Nonsense_Mutation p.S1154* 0.26 TCGA-D5-6931-01 4 5857900 5857900 C T CRMP1 Missense_Mutation p.E264K 0.24 tolerated(0.15) possibly_damaging(0.536) TCGA-D5-6931-01 4 62936392 62936392 G A LPHN3 Silent p.E1392E 0.18 TCGA-D5-6931-01 4 70146872 70146872 T G UGT2B28 Silent p.L218L 0.26 TCGA-D5-6931-01 4 70146882 70146882 T G UGT2B28 Missense_Mutation p.F222V 0.24 tolerated(0.08) possibly_damaging(0.515) TCGA-D5-6931-01 4 75311012 75311012 C T AREG 5'UTR 0.24 TCGA-D5-6931-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.67 TCGA-D5-6931-01 5 115323514 115323514 G A AQPEP Missense_Mutation p.R328H 0.50 tolerated(0.07) possibly_damaging(0.545) TCGA-D5-6931-01 5 132200035 132200035 G A GDF9 Missense_Mutation p.A64V 0.51 deleterious(0) benign(0.03) TCGA-D5-6931-01 5 13708294 13708294 C T DNAH5 Missense_Mutation p.E4426K 0.40 possibly_damaging(0.635) TCGA-D5-6931-01 5 140058669 140058669 A C HARS Missense_Mutation p.I147S 0.24 deleterious(0) possibly_damaging(0.876) TCGA-D5-6931-01 5 140175796 140175796 A G PCDHA2 Missense_Mutation p.E416G 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-D5-6931-01 5 140228290 140228290 C G PCDHA9 Silent p.G70G 0.19 TCGA-D5-6931-01 5 140579975 140579975 T G PCDHB11 Missense_Mutation p.F210V 0.31 deleterious_low_confidence(0) benign(0.213) TCGA-D5-6931-01 5 140604666 140604666 G A PCDHB14 Missense_Mutation p.R530H 0.17 tolerated_low_confidence(0.25) benign(0.016) TCGA-D5-6931-01 5 153144182 153144182 A C GRIA1 Missense_Mutation p.E681A 0.26 tolerated(0.11) possibly_damaging(0.547) TCGA-D5-6931-01 5 156768141 156768141 G A CYFIP2 Silent p.Q857Q 0.23 TCGA-D5-6931-01 5 158139990 158139990 C T EBF1 Missense_Mutation p.A453T 0.55 tolerated_low_confidence(0.18) benign(0.004) TCGA-D5-6931-01 5 158526373 158526373 G A EBF1 Silent p.D38D 0.20 TCGA-D5-6931-01 5 161116331 161116331 A C GABRA6 Missense_Mutation p.K173T 0.52 tolerated(0.08) probably_damaging(0.999) TCGA-D5-6931-01 5 179036423 179036423 G T RUFY1 Missense_Mutation p.S677I 0.56 deleterious(0.03) possibly_damaging(0.501) TCGA-D5-6931-01 5 180338542 180338542 G A BTNL8 Missense_Mutation p.A201T 0.20 tolerated(0.47) benign(0.003) TCGA-D5-6931-01 5 31799445 31799445 G A PDZD2 Silent p.P30P 0.19 TCGA-D5-6931-01 5 36035687 36035687 A C UGT3A2 3'UTR 0.22 TCGA-D5-6931-01 5 42695177 42695177 C T GHR Missense_Mutation p.S142F 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-D5-6931-01 5 79616449 79616449 G T SPZ1 Nonsense_Mutation p.E139* 0.26 TCGA-D5-6931-01 5 82837226 82837226 T A VCAN Missense_Mutation p.S2802T 0.21 tolerated(0.25) benign(0.058) TCGA-D5-6931-01 6 127517273 127517273 A T RSPO3 3'UTR 0.18 TCGA-D5-6931-01 6 152639241 152639241 T A SYNE1 Missense_Mutation p.E5516V 0.26 possibly_damaging(0.776) TCGA-D5-6931-01 6 170876091 170876091 C T TBP Missense_Mutation p.A224V 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-D5-6931-01 6 29911107 29911107 G A HLA-A Missense_Mutation p.G136R 0.53 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-D5-6931-01 6 32169236 32169236 C T NOTCH4 Missense_Mutation p.G1266E 0.71 deleterious(0.03) probably_damaging(0.936) TCGA-D5-6931-01 6 65149246 65149246 C T EYS Splice_Site p.X1882_splice 0.28 TCGA-D5-6931-01 6 96651724 96651724 G C FUT9 Missense_Mutation p.L231F 0.27 tolerated(0.54) benign(0.034) TCGA-D5-6931-01 7 100028738 100028738 G A MEPCE Missense_Mutation p.R366H 0.35 deleterious(0.01) possibly_damaging(0.749) TCGA-D5-6931-01 7 100030921 100030921 G T MEPCE Missense_Mutation p.L642F 0.16 tolerated(0.18) possibly_damaging(0.447) TCGA-D5-6931-01 7 102743938 102743938 C A NAPEPLD Missense_Mutation p.D374Y 0.28 deleterious(0) possibly_damaging(0.862) TCGA-D5-6931-01 7 103969379 103969379 A C LHFPL3 Missense_Mutation p.N51T 0.27 tolerated(0.38) probably_damaging(0.997) TCGA-D5-6931-01 7 108524127 108524127 T C C7orf66 Silent p.L95L 0.28 TCGA-D5-6931-01 7 120387858 120387858 G A KCND2 Silent p.R613R 0.29 TCGA-D5-6931-01 7 133848268 133848268 A T LRGUK Missense_Mutation p.E305D 0.30 deleterious(0.02) probably_damaging(0.965) TCGA-D5-6931-01 7 136700561 136700561 G T CHRM2 Missense_Mutation p.D317Y 0.22 tolerated(0.07) benign(0.255) TCGA-D5-6931-01 7 140244550 140244550 C T DENND2A Missense_Mutation p.R732H 0.38 deleterious(0) probably_damaging(0.973) TCGA-D5-6931-01 7 142573429 142573429 C T TRPV6 Missense_Mutation p.R305H 0.41 tolerated(0.1) benign(0.055) TCGA-D5-6931-01 7 149171786 149171786 C T ZNF746 Missense_Mutation p.E543K 0.21 deleterious(0.03) probably_damaging(0.956) TCGA-D5-6931-01 7 149430878 149430878 G A KRBA1 Silent p.P944P 0.27 TCGA-D5-6931-01 7 155532521 155532521 C A RBM33 Missense_Mutation p.P617H 0.36 tolerated(0.21) unknown(0) TCGA-D5-6931-01 7 1787102 1787102 A T ELFN1 3'UTR 0.21 TCGA-D5-6931-01 7 21723484 21723484 T G DNAH11 Missense_Mutation p.I1855S 0.31 probably_damaging(1) TCGA-D5-6931-01 7 23357296 23357296 T G IGF2BP3 Missense_Mutation p.M453L 0.22 tolerated(0.15) benign(0.324) TCGA-D5-6931-01 7 6029541 6029541 A G PMS2 Missense_Mutation p.L345P 0.19 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 7 6089588 6089588 T C EIF2AK1 Silent p.R122R 0.28 TCGA-D5-6931-01 7 72985037 72985037 C T TBL2 Missense_Mutation p.D382N 0.31 deleterious(0.04) benign(0.38) TCGA-D5-6931-01 7 76140017 76140017 C T UPK3B Silent p.L16L 0.21 TCGA-D5-6931-01 7 86394866 86394866 A G GRM3 Silent p.Q135Q 0.22 TCGA-D5-6931-01 8 100654337 100654337 A C VPS13B Missense_Mutation p.K1865T 0.20 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-D5-6931-01 8 11995096 11995096 T C USP17L2 Missense_Mutation p.R392G 0.13 tolerated(0.42) benign(0) TCGA-D5-6931-01 8 126088677 126088677 G A KIAA0196 Silent p.Y259Y 0.20 TCGA-D5-6931-01 8 21927829 21927829 G A DMTN Silent p.P196P 0.24 TCGA-D5-6931-01 8 25280894 25280894 G A GNRH1 5'UTR 0.30 TCGA-D5-6931-01 8 27528506 27528506 G A SCARA3 Missense_Mutation p.G487S 0.30 deleterious(0) probably_damaging(0.961) TCGA-D5-6931-01 8 3855463 3855463 A G CSMD1 Silent p.D260D 0.27 TCGA-D5-6931-01 8 52323842 52323842 T G PXDNL Missense_Mutation p.K677T 0.22 tolerated(0.06) benign(0.029) TCGA-D5-6931-01 8 57876250 57876250 A G IMPAD1 3'UTR 0.21 TCGA-D5-6931-01 8 65536965 65536965 A G CYP7B1 Missense_Mutation p.L85P 0.24 deleterious(0) probably_damaging(0.975) TCGA-D5-6931-01 8 77620197 77620197 G A ZFHX4 Missense_Mutation p.A1003T 0.22 possibly_damaging(0.695) TCGA-D5-6931-01 8 86053645 86053645 G T LRRCC1 Missense_Mutation p.D957Y 0.43 deleterious(0) probably_damaging(0.992) TCGA-D5-6931-01 8 88885963 88885963 C T DCAF4L2 Silent p.A79A 0.22 TCGA-D5-6931-01 8 92301406 92301406 G A SLC26A7 Missense_Mutation p.G79D 0.23 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 8 92983053 92983053 G A RUNX1T1 Missense_Mutation p.R469C 0.33 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 8 9953401 9953401 T G MSRA Intron 0.33 TCGA-D5-6931-01 9 113013637 113013637 C T TXN Splice_Site p.X43_splice 0.20 TCGA-D5-6931-01 9 116778439 116778439 G A ZNF618 Silent p.Q235Q 0.24 TCGA-D5-6931-01 9 127572539 127572539 G A OLFML2A Missense_Mutation p.D603N 0.18 deleterious(0) possibly_damaging(0.831) TCGA-D5-6931-01 9 130269549 130269549 T G FAM129B Missense_Mutation p.T606P 0.29 tolerated(0.27) benign(0.001) TCGA-D5-6931-01 9 131600026 131600026 C T CCBL1 Missense_Mutation p.G169S 0.33 tolerated(1) benign(0) TCGA-D5-6931-01 9 133954573 133954573 C T LAMC3 Missense_Mutation p.A1272V 0.17 tolerated(0.93) benign(0.002) TCGA-D5-6931-01 9 137968837 137968837 T G OLFM1 Intron 0.21 TCGA-D5-6931-01 9 139960811 139960811 C G SAPCD2 Missense_Mutation p.R196T 0.20 tolerated(0.08) benign(0.081) TCGA-D5-6931-01 9 71986508 71986508 G A FAM189A2 Missense_Mutation p.V36M 0.30 tolerated(0.12) possibly_damaging(0.903) TCGA-D5-6931-01 9 73424905 73424905 T G TRPM3 Intron 0.31 TCGA-D5-6931-01 9 82323109 82323109 A C TLE4 Missense_Mutation p.N338T 0.38 tolerated(0.09) benign(0.001) TCGA-D5-6931-01 9 90343299 90343299 T G CTSL Silent p.P128P 0.23 TCGA-D5-6931-01 9 91266958 91266958 A T RP13-60M5.2 RNA 0.13 TCGA-D5-6931-01 9 96030348 96030348 G A WNK2 Splice_Site p.X1305_splice 0.41 TCGA-D5-6931-01 9 96055061 96055061 G A WNK2 Missense_Mutation p.D1809N 0.13 unknown(0) TCGA-D5-6931-01 X 100617180 100617180 G T BTK Missense_Mutation p.P190Q 0.73 tolerated(0.09) probably_damaging(0.947) TCGA-D5-6931-01 X 100808212 100808212 G A ARMCX1 Missense_Mutation p.S100N 0.77 tolerated_low_confidence(0.22) benign(0.075) TCGA-D5-6931-01 X 101138643 101138643 C A ZMAT1 Missense_Mutation p.V586F 0.73 tolerated(0.1) benign(0.015) TCGA-D5-6931-01 X 102317822 102317822 G T BEX1 3'UTR 0.73 TCGA-D5-6931-01 X 105153263 105153263 C A NRK Missense_Mutation p.Q545K 0.73 deleterious(0.01) benign(0.164) TCGA-D5-6931-01 X 108647625 108647625 A G GUCY2F Missense_Mutation p.V686A 0.77 deleterious(0.04) benign(0.389) TCGA-D5-6931-01 X 110489887 110489887 T C CAPN6 Missense_Mutation p.K615R 0.72 tolerated(0.18) benign(0.005) TCGA-D5-6931-01 X 118221605 118221605 G A KIAA1210 Silent p.F1196F 0.73 TCGA-D5-6931-01 X 155006330 155006330 T G SPRY3 3'UTR 0.14 TCGA-D5-6931-01 X 18192195 18192195 G A BEND2 Nonsense_Mutation p.R646* 0.46 TCGA-D5-6931-01 X 23956758 23956758 A G CXorf58 Missense_Mutation p.K294E 0.45 deleterious(0.04) possibly_damaging(0.548) TCGA-D5-6931-01 X 48340102 48340102 C A FTSJ1 Nonsense_Mutation p.Y218* 0.50 TCGA-D5-6931-01 X 54578327 54578327 C T GNL3L Silent p.A367A 0.09 TCGA-D5-6931-01 X 55047527 55047527 T G ALAS2 Missense_Mutation p.Y199S 0.40 deleterious(0) probably_damaging(1) TCGA-D5-6931-01 X 6069404 6069404 T G NLGN4X Missense_Mutation p.K35T 0.48 tolerated(0.4) benign(0.001) TCGA-D5-6931-01 X 70389800 70389800 G A NLGN3 Silent p.P800P 0.75 TCGA-D5-6931-01 X 8503699 8503699 A C KAL1 Missense_Mutation p.V592G 0.47 deleterious(0) benign(0.363) TCGA-D5-6931-01 X 89177589 89177589 A G TGIF2LX Missense_Mutation p.R169G 0.76 tolerated(1) benign(0) TCGA-D5-6931-01 X 9914973 9914973 A C SHROOM2 Missense_Mutation p.K1616T 0.47 deleterious(0) probably_damaging(0.981) TCGA-D5-6931-01 Y 16734219 16734219 T G NLGN4Y Missense_Mutation p.L74V 0.55 deleterious(0) probably_damaging(0.966) TCGA-D5-6931-01 Y 4966473 4966473 A G PCDH11Y Missense_Mutation p.E285G 0.41 tolerated(0.32) benign(0.024) TCGA-D5-6932-01 10 100219428 100219428 C T HPSE2 Missense_Mutation p.R561H 0.24 deleterious(0) possibly_damaging(0.891) TCGA-D5-6932-01 10 20534432 20534432 G A PLXDC2 Missense_Mutation p.E491K 0.32 deleterious(0.01) probably_damaging(0.95) TCGA-D5-6932-01 10 33140742 33140742 T A C10ORF68 Silent p.T544T 0.45 TCGA-D5-6932-01 10 49382961 49382961 G A FRMPD2 Silent p.C1009C 0.50 TCGA-D5-6932-01 10 70514549 70514549 C A CCAR1 Silent p.R475R 0.39 TCGA-D5-6932-01 11 102220561 102220561 T C BIRC2 5'UTR 0.35 TCGA-D5-6932-01 11 102562419 102562419 T C MMP27 3'UTR 0.50 TCGA-D5-6932-01 11 17414492 17414492 G T ABCC8 3'UTR 0.36 TCGA-D5-6932-01 11 27148866 27148866 C T BBOX1 Missense_Mutation p.R344C 0.11 deleterious(0) probably_damaging(1) TCGA-D5-6932-01 11 55999593 55999593 T A OR5T2 Missense_Mutation p.T357S 0.34 tolerated_low_confidence(1) benign(0) TCGA-D5-6932-01 11 62677095 62677095 C T CHRM1 3'UTR 0.55 TCGA-D5-6932-01 11 6291978 6291978 C T CCKBR Silent p.D252D 0.43 TCGA-D5-6932-01 11 71715794 71715794 G C NUMA1 Silent p.R1966R 0.33 TCGA-D5-6932-01 11 93118642 93118642 C T CCDC67 Nonsense_Mutation p.R290* 0.38 TCGA-D5-6932-01 12 108079699 108079699 C G PWP1 Missense_Mutation p.T8R 0.41 deleterious(0.03) probably_damaging(0.973) TCGA-D5-6932-01 12 117271710 117271710 G T RNFT2 Silent p.L332L 0.22 TCGA-D5-6932-01 12 123297890 123297890 G A CCDC62 Missense_Mutation p.R642H 0.27 deleterious(0) probably_damaging(0.999) TCGA-D5-6932-01 12 20522675 20522675 G A PDE3A Missense_Mutation p.A153T 0.40 tolerated(0.77) benign(0.102) TCGA-D5-6932-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.43 deleterious(0) benign(0.361) TCGA-D5-6932-01 12 49176650 49176650 G T ADCY6 Missense_Mutation p.L190M 0.49 deleterious(0.01) probably_damaging(0.921) TCGA-D5-6932-01 12 5153832 5153832 C T KCNA5 Silent p.D173D 0.52 TCGA-D5-6932-01 12 53068992 53068992 G A KRT1 Silent p.S640S 0.17 TCGA-D5-6932-01 12 53343138 53343138 G A KRT18 Missense_Mutation p.G61R 0.50 tolerated(0.28) benign(0.012) TCGA-D5-6932-01 12 54379526 54379526 G A HOXC10 Silent p.T161T 0.16 TCGA-D5-6932-01 12 54910052 54910052 A G NCKAP1L Missense_Mutation p.E324G 0.42 deleterious(0) probably_damaging(0.997) TCGA-D5-6932-01 12 85450051 85450051 G T LRRIQ1 Nonsense_Mutation p.E494* 0.09 TCGA-D5-6932-01 12 88391881 88391881 G A C12orf50 Nonsense_Mutation p.R74* 0.20 TCGA-D5-6932-01 13 29275117 29275117 T C SLC46A3 Intron 0.11 TCGA-D5-6932-01 13 35729941 35729941 G A NBEA Missense_Mutation p.V826I 0.37 tolerated(1) benign(0.089) TCGA-D5-6932-01 13 39263012 39263012 G A FREM2 Missense_Mutation p.E511K 0.19 deleterious(0) benign(0.05) TCGA-D5-6932-01 13 39263780 39263780 C A FREM2 Missense_Mutation p.P767T 0.11 deleterious(0.03) benign(0.119) TCGA-D5-6932-01 13 96536830 96536830 A G UGGT2 Missense_Mutation p.L1048P 0.15 deleterious(0) probably_damaging(1) TCGA-D5-6932-01 14 25075937 25075937 G A GZMH Missense_Mutation p.P205S 0.31 deleterious(0) probably_damaging(0.994) TCGA-D5-6932-01 14 44973900 44973900 T G FSCB Missense_Mutation p.Q764P 0.57 deleterious(0.03) unknown(0) TCGA-D5-6932-01 14 51475905 51475905 C T TRIM9 Nonsense_Mutation p.W400* 0.71 TCGA-D5-6932-01 14 52456398 52456398 C T C14orf166 Missense_Mutation p.P14L 0.50 tolerated(0.46) benign(0.358) TCGA-D5-6932-01 15 67528838 67528838 G A AAGAB Missense_Mutation p.S90L 0.61 tolerated(0.23) benign(0.003) TCGA-D5-6932-01 15 75766104 75766104 A G PTPN9 Silent p.P378P 0.08 TCGA-D5-6932-01 15 75969303 75969303 G A CSPG4 Missense_Mutation p.R1853W 0.74 deleterious(0) probably_damaging(0.987) TCGA-D5-6932-01 16 223497 223497 C A HBA2 Silent p.T109T 0.38 TCGA-D5-6932-01 16 23536447 23536447 A G EARS2 Intron 0.09 TCGA-D5-6932-01 16 24166141 24166141 C A PRKCB Missense_Mutation p.P401H 0.45 tolerated(0.12) benign(0.272) TCGA-D5-6932-01 16 57017560 57017560 C - CETP Frame_Shift_Del p.L489Sfs*4 0.30 TCGA-D5-6932-01 16 58148767 58148767 C G C16orf80 Missense_Mutation p.D175H 0.49 deleterious(0) possibly_damaging(0.9) TCGA-D5-6932-01 16 71997164 71997164 C A PKD1L3 RNA 0.42 TCGA-D5-6932-01 16 75147882 75147882 C A LDHD Missense_Mutation p.V294L 0.33 tolerated(0.13) benign(0.12) TCGA-D5-6932-01 16 88494901 88494901 G T ZNF469 Missense_Mutation p.Q341H 0.41 benign(0.354) TCGA-D5-6932-01 17 30349316 30349316 T A LRRC37B Missense_Mutation p.L384Q 0.17 tolerated(0.34) benign(0.003) TCGA-D5-6932-01 17 39768855 39768855 C T KRT16 Missense_Mutation p.S29N 0.51 deleterious(0.01) unknown(0) TCGA-D5-6932-01 17 43192773 43192773 C G PLCD3 Missense_Mutation p.E500Q 0.42 tolerated(0.11) possibly_damaging(0.543) TCGA-D5-6932-01 17 58946043 58946043 C T BCAS3 Missense_Mutation p.R195W 0.39 deleterious(0) possibly_damaging(0.847) TCGA-D5-6932-01 17 60050121 60050121 G T MED13 Missense_Mutation p.Q1312K 0.48 deleterious(0) probably_damaging(0.977) TCGA-D5-6932-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.53 deleterious(0) probably_damaging(0.994) TCGA-D5-6932-01 17 79477616 79477616 C T ACTG1 3'UTR 0.18 TCGA-D5-6932-01 18 3456550 3456550 C - TGIF1 Frame_Shift_Del p.Q202Sfs*26 0.40 TCGA-D5-6932-01 19 11350566 11350566 C T C19orf80 Missense_Mutation p.R85W 0.43 tolerated(0.06) benign(0.007) TCGA-D5-6932-01 19 17311536 17311536 G C MYO9B Missense_Mutation p.K1487N 0.32 deleterious(0) benign(0.118) TCGA-D5-6932-01 19 20117244 20117244 A T ZNF682 Missense_Mutation p.L356H 0.18 deleterious(0) probably_damaging(1) TCGA-D5-6932-01 19 21992470 21992470 C G ZNF43 Missense_Mutation p.E123D 0.40 tolerated(0.13) benign(0.411) TCGA-D5-6932-01 19 22585617 22585617 C G ZNF98 Missense_Mutation p.R76T 0.30 tolerated(0.08) benign(0.002) TCGA-D5-6932-01 19 35175168 35175168 A G ZNF302 Missense_Mutation p.R76G 0.39 tolerated(0.41) possibly_damaging(0.477) TCGA-D5-6932-01 19 41387540 41387540 G A CYP2A7 Silent p.S99S 0.37 TCGA-D5-6932-01 19 48048956 48048956 C T ZNF541 Missense_Mutation p.R277H 0.36 deleterious(0.04) possibly_damaging(0.513) TCGA-D5-6932-01 19 57910542 57910542 T C ZNF548 Missense_Mutation p.F308S 0.31 deleterious(0) benign(0.077) TCGA-D5-6932-01 19 9046851 9046851 T G MUC16 Missense_Mutation p.N11594H 0.36 benign(0.063) TCGA-D5-6932-01 1 119619180 119619180 G T WARS2 Silent p.L47L 0.51 TCGA-D5-6932-01 1 1273491 1273491 T C DVL1 Missense_Mutation p.H502R 0.08 tolerated(0.39) unknown(0) TCGA-D5-6932-01 1 153655904 153655904 G A NPR1 Missense_Mutation p.R439H 0.45 deleterious(0.04) benign(0.002) TCGA-D5-6932-01 1 155891709 155891709 C A KIAA0907 Missense_Mutation p.V319F 0.52 deleterious(0) probably_damaging(0.996) TCGA-D5-6932-01 1 158450187 158450187 T G OR10R2 Missense_Mutation p.L174V 0.24 tolerated(0.22) benign(0.159) TCGA-D5-6932-01 1 158636111 158636111 G A SPTA1 Missense_Mutation p.R739C 0.56 deleterious(0) probably_damaging(0.967) TCGA-D5-6932-01 1 229478150 229478150 C A CCSAP Missense_Mutation p.E21D 0.47 tolerated(1) unknown(0) TCGA-D5-6932-01 1 230927674 230927674 C T CAPN9 Silent p.D574D 0.23 TCGA-D5-6932-01 1 237947200 237947200 C T RYR2 Missense_Mutation p.T4063M 0.61 possibly_damaging(0.787) TCGA-D5-6932-01 1 247655137 247655137 A C OR2W5 RNA 0.22 TCGA-D5-6932-01 1 247655145 247655145 C A OR2W5 RNA 0.20 TCGA-D5-6932-01 1 34006147 34006147 G A CSMD2 Silent p.T3059T 0.18 TCGA-D5-6932-01 1 34174912 34174912 A C CSMD2 Intron 0.63 TCGA-D5-6932-01 1 44595176 44595176 C T KLF17 Missense_Mutation p.P78L 0.19 tolerated(0.09) benign(0.221) TCGA-D5-6932-01 1 49711462 49711462 T A AGBL4 Missense_Mutation p.K119N 0.54 deleterious(0) possibly_damaging(0.893) TCGA-D5-6932-01 1 86965517 86965517 A T CLCA1 Missense_Mutation p.Q845L 0.47 deleterious(0.02) benign(0.357) TCGA-D5-6932-01 20 20569960 20569960 A G RALGAPA2 Silent p.P797P 0.50 TCGA-D5-6932-01 20 30064240 30064240 C T REM1 5'UTR 0.22 TCGA-D5-6932-01 20 30671801 30671801 C T HCK Nonsense_Mutation p.R213* 0.76 TCGA-D5-6932-01 20 31021357 31021357 G A ASXL1 Silent p.G452G 0.19 TCGA-D5-6932-01 20 34021706 34021706 G A GDF5 3'UTR 0.27 TCGA-D5-6932-01 20 34021707 34021707 C A GDF5 Nonstop_Mutation p.*502Yext*38 0.27 TCGA-D5-6932-01 20 36867953 36867953 C T KIAA1755 Missense_Mutation p.R575H 0.11 tolerated(1) benign(0) TCGA-D5-6932-01 20 39987555 39987555 G T LPIN3 3'UTR 0.24 TCGA-D5-6932-01 20 40033740 40033740 A G CHD6 Silent p.T2547T 0.09 TCGA-D5-6932-01 20 44513132 44513132 T G ZSWIM1 3'UTR 0.75 TCGA-D5-6932-01 20 44519851 44519851 G T CTSA 5'UTR 0.28 TCGA-D5-6932-01 21 14417582 14417582 A G RNU6-614P 5'Flank 0.12 TCGA-D5-6932-01 2 136614433 136614433 C G MCM6 Silent p.T497T 0.33 TCGA-D5-6932-01 2 138434173 138434173 T A THSD7B Nonstop_Mutation p.*1610Kext*8 0.34 TCGA-D5-6932-01 2 141459302 141459302 C T LRP1B Missense_Mutation p.V2139I 0.18 benign(0.097) TCGA-D5-6932-01 2 165947680 165947680 C A SCN3A Silent p.L1661L 0.29 TCGA-D5-6932-01 2 168106391 168106391 G A XIRP2 Missense_Mutation p.R2830Q 0.30 benign(0.145) TCGA-D5-6932-01 2 179584468 179584468 T G TTN Missense_Mutation p.E7917D 0.32 TCGA-D5-6932-01 2 207172811 207172811 C G ZDBF2 Missense_Mutation p.L1187V 0.30 tolerated(0.18) benign(0.364) TCGA-D5-6932-01 2 213403199 213403199 G A ERBB4 Missense_Mutation p.T19I 0.39 tolerated(0.2) benign(0.013) TCGA-D5-6932-01 2 213872794 213872794 G A IKZF2 Nonsense_Mutation p.R291* 0.28 TCGA-D5-6932-01 2 213921634 213921634 C A IKZF2 Missense_Mutation p.G110V 0.39 deleterious(0) probably_damaging(0.998) TCGA-D5-6932-01 2 213921635 213921635 C A IKZF2 Missense_Mutation p.G110C 0.39 deleterious(0) probably_damaging(0.999) TCGA-D5-6932-01 2 214972975 214972975 T G SPAG16 Missense_Mutation p.F528C 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-D5-6932-01 2 216272836 216272836 A G FN1 Missense_Mutation p.I838T 0.11 deleterious(0) probably_damaging(0.998) TCGA-D5-6932-01 2 226447505 226447505 G A NYAP2 Missense_Mutation p.D458N 0.37 tolerated(0.12) possibly_damaging(0.767) TCGA-D5-6932-01 2 51254968 51254968 C T NRXN1 Silent p.T148T 0.30 TCGA-D5-6932-01 2 89084257 89084257 A G ANKRD36BP2 RNA 0.55 TCGA-D5-6932-01 3 111766712 111766712 G A TMPRSS7 Missense_Mutation p.R160H 0.12 deleterious(0.02) probably_damaging(0.988) TCGA-D5-6932-01 3 179109912 179109912 T G MFN1 3'UTR 0.21 TCGA-D5-6932-01 3 183777236 183777236 C T HTR3C Missense_Mutation p.R245C 0.28 deleterious(0.04) possibly_damaging(0.635) TCGA-D5-6932-01 3 187416731 187416731 A G RTP2 Missense_Mutation p.L78P 0.10 deleterious(0.01) probably_damaging(1) TCGA-D5-6932-01 3 20017641 20017641 A G RAB5A Missense_Mutation p.K140E 0.52 tolerated(0.18) benign(0.088) TCGA-D5-6932-01 3 46721989 46721989 G A ALS2CL Silent p.H493H 0.43 TCGA-D5-6932-01 4 124322794 124322794 C G SPRY1 Missense_Mutation p.I16M 0.49 tolerated(0.46) benign(0.072) TCGA-D5-6932-01 4 156847036 156847036 C T CTSO 3'UTR 0.27 TCGA-D5-6932-01 4 168155391 168155391 G T SPOCK3 Intron 0.59 TCGA-D5-6932-01 4 187084686 187084686 G T FAM149A Missense_Mutation p.K314N 0.20 deleterious(0.03) benign(0.127) TCGA-D5-6932-01 4 20255442 20255442 C T SLIT2 Missense_Mutation p.R2C 0.53 tolerated_low_confidence(0.07) benign(0.017) TCGA-D5-6932-01 4 39905693 39905693 A T PDS5A Missense_Mutation p.L451Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-D5-6932-01 4 69093703 69093703 T C TMPRSS11B Missense_Mutation p.K393E 0.34 tolerated(0.2) benign(0.011) TCGA-D5-6932-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.65 TCGA-D5-6932-01 5 135567197 135567197 C A TRPC7 Missense_Mutation p.G629C 0.41 deleterious(0) probably_damaging(1) TCGA-D5-6932-01 5 139938378 139938378 G T APBB3 Missense_Mutation p.S425Y 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D5-6932-01 5 140563 140563 C T PLEKHG4B Silent p.G47G 0.43 TCGA-D5-6932-01 5 140580992 140580992 G A PCDHB11 Missense_Mutation p.V549M 0.40 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D5-6932-01 5 176910622 176910622 C T PDLIM7 3'UTR 0.30 TCGA-D5-6932-01 5 31538446 31538446 C A C5orf22 Missense_Mutation p.Q153K 0.35 tolerated(0.44) benign(0.016) TCGA-D5-6932-01 5 68419114 68419114 C T SLC30A5 Silent p.I620I 0.33 TCGA-D5-6932-01 5 82833591 82833591 C A VCAN Missense_Mutation p.S1590Y 0.41 tolerated(0.07) probably_damaging(0.935) TCGA-D5-6932-01 5 89999482 89999482 G A GPR98 Missense_Mutation p.G2719E 0.20 probably_damaging(0.994) TCGA-D5-6932-01 5 98115295 98115298 CAGC - RGMB Frame_Shift_Del p.A93Nfs*14 0.65 TCGA-D5-6932-01 6 112508717 112508717 C T LAMA4 Missense_Mutation p.V301I 0.61 tolerated(1) benign(0.129) TCGA-D5-6932-01 6 117073808 117073808 A T FAM162B Silent p.A147A 0.30 TCGA-D5-6932-01 6 118881095 118881095 T A PLN 3'UTR 0.12 TCGA-D5-6932-01 6 12121502 12121502 A T HIVEP1 Missense_Mutation p.S492C 0.67 deleterious(0) probably_damaging(0.999) TCGA-D5-6932-01 6 135363247 135363247 A G HBS1L Missense_Mutation p.S43P 0.45 deleterious(0.02) probably_damaging(0.974) TCGA-D5-6932-01 6 155504568 155504568 C A TIAM2 Missense_Mutation p.P1000T 0.22 tolerated(0.07) probably_damaging(0.992) TCGA-D5-6932-01 6 17817423 17817423 G C KIF13A Missense_Mutation p.L610V 0.44 tolerated(0.07) benign(0.125) TCGA-D5-6932-01 6 24448206 24448206 C T GPLD1 Missense_Mutation p.S526N 0.21 tolerated(0.08) benign(0.1) TCGA-D5-6932-01 6 38810549 38810549 A G DNAH8 Missense_Mutation p.K1355R 0.16 benign(0.247) TCGA-D5-6932-01 6 41743239 41743239 C A FRS3 Missense_Mutation p.W57C 0.20 deleterious(0) probably_damaging(0.99) TCGA-D5-6932-01 6 41743240 41743240 C G FRS3 Missense_Mutation p.W57S 0.20 deleterious(0) probably_damaging(1) TCGA-D5-6932-01 6 52268248 52268248 C - PAQR8 Frame_Shift_Del p.W80Gfs*72 0.22 TCGA-D5-6932-01 6 57512641 57512641 T C PRIM2 3'UTR 0.04 TCGA-D5-6932-01 6 87994526 87994526 G T GJB7 Silent p.V35V 0.18 TCGA-D5-6932-01 7 11080331 11080331 C G PHF14 Silent p.P703P 0.49 TCGA-D5-6932-01 7 116830222 116830222 C T ST7 Intron 0.28 TCGA-D5-6932-01 7 137261984 137261984 T G DGKI Missense_Mutation p.K582T 0.16 deleterious(0.02) possibly_damaging(0.816) TCGA-D5-6932-01 7 138524942 138524942 C T KIAA1549 Missense_Mutation p.G1845D 0.38 deleterious(0) probably_damaging(0.935) TCGA-D5-6932-01 7 140244551 140244551 G A DENND2A Missense_Mutation p.R732C 0.39 deleterious(0) probably_damaging(0.973) TCGA-D5-6932-01 7 151716873 151716873 T A GALNTL5 Missense_Mutation p.V440E 0.29 tolerated(0.39) benign(0.005) TCGA-D5-6932-01 7 1786667 1786667 T C ELFN1 Missense_Mutation p.L812P 0.11 deleterious(0) probably_damaging(0.998) TCGA-D5-6932-01 7 23872021 23872021 A C STK31 3'UTR 0.66 TCGA-D5-6932-01 7 2416659 2416659 G C EIF3B Missense_Mutation p.Q701H 0.27 deleterious(0.03) possibly_damaging(0.456) TCGA-D5-6932-01 7 47874738 47874738 A T PKD1L1 Missense_Mutation p.L2016H 0.37 tolerated(0.09) benign(0.119) TCGA-D5-6932-01 7 71175832 71175832 C A WBSCR17 Missense_Mutation p.D529E 0.53 deleterious(0.02) probably_damaging(0.987) TCGA-D5-6932-01 7 72727138 72727138 C T TRIM50 Missense_Mutation p.G415R 0.56 deleterious(0) probably_damaging(0.998) TCGA-D5-6932-01 7 74251503 74251503 T C GTF2IRD2 Intron 0.36 TCGA-D5-6932-01 7 80300425 80300425 T A CD36 Silent p.I317I 0.57 TCGA-D5-6932-01 8 113237126 113237126 T G CSMD3 Silent p.S3666S 0.34 TCGA-D5-6932-01 8 32505334 32505334 C T NRG1 Intron 0.19 TCGA-D5-6932-01 8 38287279 38287279 G A FGFR1 Silent p.P126P 0.36 TCGA-D5-6932-01 8 53077786 53077786 C G ST18 Splice_Site p.X402_splice 0.38 TCGA-D5-6932-01 8 59510074 59510074 G C NSMAF Missense_Mutation p.T586R 0.32 deleterious(0) possibly_damaging(0.898) TCGA-D5-6932-01 8 6303160 6303160 T G MCPH1 Intron 0.22 TCGA-D5-6932-01 8 67507832 67507832 A - MYBL1 Frame_Shift_Del p.Y225Tfs*19 0.27 TCGA-D5-6932-01 8 74207508 74207508 G T RDH10 5'UTR 0.58 TCGA-D5-6932-01 9 107457547 107457547 T C OR13D1 Missense_Mutation p.L282S 0.37 deleterious(0) probably_damaging(1) TCGA-D5-6932-01 9 116993367 116993367 A C COL27A1 Missense_Mutation p.L825F 0.47 unknown(0) TCGA-D5-6932-01 9 131218469 131218469 G A ODF2 5'Flank 0.39 TCGA-D5-6932-01 9 133768947 133768947 T C QRFP Silent p.E93E 0.11 TCGA-D5-6932-01 9 16436895 16436895 C T BNC2 Missense_Mutation p.G433R 0.36 deleterious(0.02) probably_damaging(0.972) TCGA-D5-6932-01 9 18826354 18826354 G A ADAMTSL1 Missense_Mutation p.G1336D 0.45 deleterious(0.01) probably_damaging(0.93) TCGA-D5-6932-01 9 34372608 34372608 G A KIAA1161 Missense_Mutation p.R78C 0.42 deleterious(0.02) possibly_damaging(0.794) TCGA-D5-6932-01 9 47312473 47312473 G T AL953854.2 Silent p.T94T 0.39 TCGA-D5-6932-01 X 122799678 122799678 G A THOC2 Missense_Mutation p.P401S 0.71 tolerated(0.17) benign(0.013) TCGA-D5-6932-01 X 123787609 123787609 T A TENM1 Missense_Mutation p.D398V 0.72 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-D5-6932-01 X 140996328 140996328 A C MAGEC1 Missense_Mutation p.K1046N 0.65 deleterious(0.01) unknown(0) TCGA-D5-6932-01 X 70346886 70346886 A G MED12 Missense_Mutation p.Y918C 0.69 probably_damaging(0.999) TCGA-D5-7000-01 10 119001216 119001216 C T SLC18A2 Silent p.S4S 0.21 TCGA-D5-7000-01 10 15649823 15649823 C A ITGA8 Missense_Mutation p.M539I 0.52 tolerated(0.18) benign(0) TCGA-D5-7000-01 10 26507984 26507984 C T GAD2 Missense_Mutation p.A100V 0.09 tolerated(0.07) benign(0.021) TCGA-D5-7000-01 10 69407205 69407205 C T CTNNA3 Missense_Mutation p.V23M 0.30 deleterious(0) possibly_damaging(0.867) TCGA-D5-7000-01 10 76928313 76928313 G A SAMD8 Missense_Mutation p.R230Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-D5-7000-01 11 108115727 108115727 C T ATM Missense_Mutation p.P292L 0.69 deleterious(0) probably_damaging(1) TCGA-D5-7000-01 11 18764894 18764894 G A PTPN5 Missense_Mutation p.T125M 0.40 tolerated_low_confidence(0.06) benign(0.033) TCGA-D5-7000-01 11 56020463 56020463 G T OR5T3 Missense_Mutation p.G263V 0.41 deleterious(0.01) possibly_damaging(0.873) TCGA-D5-7000-01 12 104078853 104078853 C T STAB2 Silent p.N996N 0.54 TCGA-D5-7000-01 12 113321169 113321169 C T RPH3A Silent p.H466H 0.27 TCGA-D5-7000-01 12 113711423 113711423 G A TPCN1 Missense_Mutation p.V370I 0.51 tolerated(0.5) benign(0.026) TCGA-D5-7000-01 12 132504634 132504634 C T EP400 Missense_Mutation p.R1440C 0.52 unknown(0) TCGA-D5-7000-01 12 25380277 25380277 G T KRAS Missense_Mutation p.Q61K 0.51 deleterious(0.01) benign(0.279) TCGA-D5-7000-01 12 25380278 25380278 A G KRAS Silent p.G60G 0.50 TCGA-D5-7000-01 12 50146287 50146287 T C TMBIM6 Missense_Mutation p.F62S 0.45 deleterious(0) probably_damaging(0.911) TCGA-D5-7000-01 12 78362337 78362337 T G NAV3 Missense_Mutation p.F176V 0.51 deleterious(0) benign(0.158) TCGA-D5-7000-01 13 110831669 110831669 C T COL4A1 Missense_Mutation p.V765I 0.28 benign(0.2) TCGA-D5-7000-01 13 27255319 27255319 C T WASF3 Missense_Mutation p.A282V 0.49 tolerated(0.31) benign(0.001) TCGA-D5-7000-01 14 103569056 103569056 C T EXOC3L4 Silent p.R332R 0.36 TCGA-D5-7000-01 14 106805623 106805623 G T IGHV4-31 Missense_Mutation p.L8I 0.32 deleterious_low_confidence(0.03) benign(0.142) TCGA-D5-7000-01 14 20528233 20528233 C T OR4L1 Silent p.T10T 0.29 TCGA-D5-7000-01 14 23417206 23417206 G A HAUS4 Silent p.T193T 0.30 TCGA-D5-7000-01 14 23828091 23828091 C T EFS Silent p.A415A 0.33 TCGA-D5-7000-01 14 42360596 42360596 C T LRFN5 Missense_Mutation p.T510M 0.32 deleterious(0) probably_damaging(1) TCGA-D5-7000-01 14 64065667 64065667 G T WDR89 Missense_Mutation p.Q332K 0.30 tolerated(0.88) benign(0.007) TCGA-D5-7000-01 14 69966878 69966879 - A PLEKHD1 Frame_Shift_Ins p.S69Efs*3 0.19 TCGA-D5-7000-01 14 73969719 73969719 T - HEATR4 Splice_Site p.X663_splice 0.25 TCGA-D5-7000-01 15 26107886 26107886 C G ATP10A Missense_Mutation p.A120P 0.13 tolerated(0.08) probably_damaging(0.944) TCGA-D5-7000-01 15 41794319 41794319 G A ITPKA Missense_Mutation p.V310I 0.42 tolerated(0.09) benign(0.436) TCGA-D5-7000-01 15 65490192 65490192 A G CILP Missense_Mutation p.F811S 0.08 deleterious(0) probably_damaging(0.993) TCGA-D5-7000-01 15 66625136 66625136 C A DIS3L Missense_Mutation p.P915Q 0.27 tolerated(0.63) benign(0.001) TCGA-D5-7000-01 16 2979914 2979914 C T FLYWCH1 Silent p.L76L 0.45 TCGA-D5-7000-01 16 4433480 4433480 C T VASN 3'UTR 0.36 TCGA-D5-7000-01 16 55600818 55600818 G C CAPNS2 Missense_Mutation p.E50D 0.24 tolerated(0.12) benign(0.057) TCGA-D5-7000-01 16 68406215 68406215 C T SMPD3 5'UTR 0.43 TCGA-D5-7000-01 16 69959347 69959347 G A WWP2 Silent p.S398S 0.42 TCGA-D5-7000-01 16 71602123 71602123 G A TAT Missense_Mutation p.A430V 0.32 deleterious(0.02) probably_damaging(0.98) TCGA-D5-7000-01 17 14683312 14683312 C G AC005863.1 RNA 0.34 TCGA-D5-7000-01 17 34074080 34074080 C T GAS2L2 Missense_Mutation p.R347Q 0.30 tolerated(0.62) benign(0.003) TCGA-D5-7000-01 17 37316951 37316951 G A ARL5C Silent p.D128D 0.49 TCGA-D5-7000-01 17 38645138 38645138 G A TNS4 Missense_Mutation p.P175S 0.39 tolerated(0.54) benign(0.029) TCGA-D5-7000-01 17 39254035 39254035 C T KRTAP4-8 Missense_Mutation p.R101H 0.25 deleterious(0.04) unknown(0) TCGA-D5-7000-01 17 39305837 39305837 G T KRTAP4-5 Nonsense_Mutation p.C61* 0.13 TCGA-D5-7000-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.29 deleterious(0.01) possibly_damaging(0.655) TCGA-D5-7000-01 17 5291193 5291193 C T NUP88 Missense_Mutation p.E559K 0.39 tolerated(0.25) benign(0.02) TCGA-D5-7000-01 17 7290343 7290343 C T TNK1 Missense_Mutation p.R428C 0.39 deleterious(0.01) benign(0.016) TCGA-D5-7000-01 17 74386994 74386994 C T UBE2O 3'UTR 0.35 TCGA-D5-7000-01 17 8791597 8791597 G A PIK3R5 Missense_Mutation p.R503C 0.18 deleterious(0.01) benign(0.248) TCGA-D5-7000-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.64 deleterious(0.03) probably_damaging(1) TCGA-D5-7000-01 18 57136831 57136831 C T CCBE1 Missense_Mutation p.V92I 0.26 tolerated(0.06) benign(0.006) TCGA-D5-7000-01 18 7038910 7038910 C G LAMA1 Missense_Mutation p.G488R 0.12 deleterious(0) probably_damaging(0.997) TCGA-D5-7000-01 19 12911099 12911099 C T PRDX2 Missense_Mutation p.R91Q 0.27 deleterious(0.03) benign(0.05) TCGA-D5-7000-01 19 13335503 13335503 G A CACNA1A Silent p.A1903A 0.35 TCGA-D5-7000-01 19 14247299 14247299 A G ASF1B 5'UTR 0.11 TCGA-D5-7000-01 19 15302370 15302370 C T NOTCH3 Missense_Mutation p.V301M 0.28 deleterious(0) probably_damaging(1) TCGA-D5-7000-01 19 2416775 2416775 T C TMPRSS9 Missense_Mutation p.I628T 0.20 deleterious(0) probably_damaging(0.911) TCGA-D5-7000-01 19 35749961 35749961 G A LSR Missense_Mutation p.V238I 0.21 deleterious(0) possibly_damaging(0.493) TCGA-D5-7000-01 19 3651959 3651959 C T PIP5K1C Missense_Mutation p.R331H 0.36 deleterious(0) probably_damaging(0.977) TCGA-D5-7000-01 19 41206278 41206278 C T ADCK4 Missense_Mutation p.M324I 0.24 deleterious(0.02) possibly_damaging(0.877) TCGA-D5-7000-01 19 54172416 54172416 T C MIR512-2 RNA 0.33 TCGA-D5-7000-01 19 54396628 54396628 C T PRKCG Missense_Mutation p.P308S 0.28 tolerated(0.26) benign(0.014) TCGA-D5-7000-01 19 54745723 54745723 C A LILRA6 Silent p.L129L 0.21 TCGA-D5-7000-01 19 7963987 7963987 G A LRRC8E Missense_Mutation p.G194R 0.47 tolerated(0.35) possibly_damaging(0.586) TCGA-D5-7000-01 1 152129243 152129243 C A RPTN Missense_Mutation p.C111F 0.33 deleterious(0.03) benign(0) TCGA-D5-7000-01 1 159862989 159862989 C A CCDC19 Missense_Mutation p.S37I 0.29 deleterious(0.03) benign(0.406) TCGA-D5-7000-01 1 173883797 173883797 G A SERPINC1 Missense_Mutation p.S101F 0.44 deleterious(0.02) benign(0.048) TCGA-D5-7000-01 1 176564660 176564660 C T PAPPA2 Silent p.D640D 0.32 TCGA-D5-7000-01 1 185970869 185970869 G T HMCN1 Silent p.V1448V 0.25 TCGA-D5-7000-01 1 19415372 19415372 G - UBR4 Frame_Shift_Del p.L4771Cfs*7 0.17 TCGA-D5-7000-01 1 202097159 202097159 C T GPR37L1 Silent p.N307N 0.41 TCGA-D5-7000-01 1 203025561 203025563 CTC - PPFIA4 In_Frame_Del p.P218del 0.23 TCGA-D5-7000-01 1 2434117 2434117 G T PLCH2 Silent p.P1049P 0.14 TCGA-D5-7000-01 1 53546513 53546513 C T PODN Silent p.F590F 0.40 TCGA-D5-7000-01 1 75626603 75626603 G C LHX8 3'UTR 0.28 TCGA-D5-7000-01 1 89273116 89273116 G A PKN2 Missense_Mutation p.E642K 0.34 tolerated(0.55) benign(0.017) TCGA-D5-7000-01 20 47570180 47570180 G A ARFGEF2 Missense_Mutation p.V231I 0.50 tolerated(0.19) benign(0) TCGA-D5-7000-01 20 60864350 60864350 C T OSBPL2 Missense_Mutation p.R405C 0.31 deleterious(0) probably_damaging(0.988) TCGA-D5-7000-01 22 17073459 17073459 A G CCT8L2 5'UTR 0.08 TCGA-D5-7000-01 22 21800825 21800825 C T HIC2 Silent p.T547T 0.43 TCGA-D5-7000-01 2 102476236 102476236 G A MAP4K4 Silent p.Q538Q 0.32 TCGA-D5-7000-01 2 121747670 121747670 G T GLI2 Missense_Mutation p.A1394S 0.21 tolerated(0.16) benign(0.396) TCGA-D5-7000-01 2 1241712 1241712 C T SNTG2 Missense_Mutation p.R258W 0.31 deleterious(0.03) benign(0.001) TCGA-D5-7000-01 2 167149794 167149794 A T SCN9A Missense_Mutation p.L352I 0.37 deleterious(0) probably_damaging(1) TCGA-D5-7000-01 2 179443562 179443562 G A TTN Missense_Mutation p.S22732L 0.20 TCGA-D5-7000-01 2 219603743 219603743 A G TTLL4 Silent p.E448E 0.08 TCGA-D5-7000-01 2 220432457 220432457 G C OBSL1 Missense_Mutation p.T506R 0.25 deleterious(0) possibly_damaging(0.463) TCGA-D5-7000-01 3 122345681 122345681 C T PARP15 Silent p.A413A 0.32 TCGA-D5-7000-01 3 126723993 126723993 G T PLXNA1 Missense_Mutation p.D602Y 0.38 deleterious(0.01) benign(0.413) TCGA-D5-7000-01 3 138423291 138423293 ATT - PIK3CB In_Frame_Del p.N525del 0.19 TCGA-D5-7000-01 3 170715751 170715751 C T SLC2A2 Missense_Mutation p.A506T 0.36 tolerated(0.12) benign(0.002) TCGA-D5-7000-01 3 175041969 175041969 C T NAALADL2 Silent p.S315S 0.37 TCGA-D5-7000-01 3 195509311 195509311 G A MUC4 Missense_Mutation p.S3047F 0.30 possibly_damaging(0.845) TCGA-D5-7000-01 3 88042620 88042620 G C HTR1F 3'UTR 0.31 TCGA-D5-7000-01 4 121966953 121966953 G A NDNF Missense_Mutation p.P14S 0.35 tolerated_low_confidence(0.24) unknown(0) TCGA-D5-7000-01 4 122053801 122053801 C G TNIP3 3'UTR 0.30 TCGA-D5-7000-01 4 13616990 13616990 T C BOD1L1 Missense_Mutation p.S169G 0.22 benign(0.006) TCGA-D5-7000-01 4 187630465 187630465 C T FAT1 Missense_Mutation p.A173T 0.31 probably_damaging(1) TCGA-D5-7000-01 4 57182443 57182443 C T KIAA1211 Silent p.S925S 0.08 TCGA-D5-7000-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.66 TCGA-D5-7000-01 5 140481787 140481787 G A PCDHB3 Silent p.S518S 0.67 TCGA-D5-7000-01 5 140865199 140865199 G A PCDHGC4 Silent p.P153P 0.61 TCGA-D5-7000-01 5 149997955 149997955 C T SYNPO Missense_Mutation p.P9L 0.59 tolerated_low_confidence(0.06) unknown(0) TCGA-D5-7000-01 5 162945399 162945399 T A MAT2B 3'UTR 0.53 TCGA-D5-7000-01 5 19721520 19721520 G T CDH18 Missense_Mutation p.N193K 0.71 deleterious(0) probably_damaging(0.994) TCGA-D5-7000-01 5 55252063 55252063 T C IL6ST Missense_Mutation p.T353A 0.65 tolerated(0.71) benign(0) TCGA-D5-7000-01 5 55407001 55407001 C A ANKRD55 Missense_Mutation p.G525V 0.69 tolerated_low_confidence(0.17) benign(0.157) TCGA-D5-7000-01 5 87498892 87498892 T A TMEM161B Missense_Mutation p.Q267H 0.65 deleterious(0) probably_damaging(0.999) TCGA-D5-7000-01 5 93859772 93859772 C A KIAA0825 Nonsense_Mutation p.E55* 0.67 TCGA-D5-7000-01 6 10983995 10983995 C T ELOVL2 3'UTR 0.04 TCGA-D5-7000-01 6 148865777 148865777 G A SASH1 Silent p.P1057P 0.81 TCGA-D5-7000-01 6 1614045 1614045 T G FOXC1 3'UTR 0.64 TCGA-D5-7000-01 6 18121983 18121983 C G NHLRC1 Silent p.L285L 0.73 TCGA-D5-7000-01 6 75844556 75844556 G A COL12A1 Missense_Mutation p.R1804W 0.17 probably_damaging(0.986) TCGA-D5-7000-01 7 116918233 116918233 G A WNT2 Silent p.N353N 0.39 TCGA-D5-7000-01 7 138406767 138406767 G A ATP6V0A4 Nonsense_Mutation p.Q672* 0.33 TCGA-D5-7000-01 7 154863197 154863197 C T HTR5A Silent p.R196R 0.26 TCGA-D5-7000-01 7 27186965 27186965 G A HOXA6 Missense_Mutation p.P135L 0.23 tolerated(0.12) probably_damaging(0.982) TCGA-D5-7000-01 7 82467591 82467591 C T PCLO Missense_Mutation p.R4722Q 0.43 unknown(0) TCGA-D5-7000-01 7 87258116 87258116 A C RUNDC3B 5'UTR 0.31 TCGA-D5-7000-01 7 87536837 87536837 C T DBF4 Missense_Mutation p.L462F 0.46 tolerated(0.71) benign(0.033) TCGA-D5-7000-01 7 87536839 87536839 T A DBF4 Silent p.L462L 0.46 TCGA-D5-7000-01 7 98507909 98507909 C T TRRAP Silent p.F527F 0.39 TCGA-D5-7000-01 8 100729473 100729473 C T VPS13B Missense_Mutation p.R2202C 0.25 deleterious(0) possibly_damaging(0.689) TCGA-D5-7000-01 8 15998551 15998551 G C MSR1 Intron 0.18 TCGA-D5-7000-01 8 26366362 26366362 T G PNMA2 5'UTR 0.18 TCGA-D5-7000-01 8 72756064 72756064 C T MSC Missense_Mutation p.R117H 0.22 deleterious(0) probably_damaging(1) TCGA-D5-7000-01 8 95538823 95538823 C T KIAA1429 Missense_Mutation p.G550D 0.30 tolerated(0.07) probably_damaging(0.985) TCGA-D5-7000-01 9 116122944 116122944 C T BSPRY Missense_Mutation p.A153V 0.29 tolerated(0.05) benign(0.028) TCGA-D5-7000-01 9 119382637 119382637 G A ASTN2 Missense_Mutation p.A1002V 0.32 deleterious(0) unknown(0) TCGA-D5-7000-01 9 133747588 133747588 G A ABL1 Missense_Mutation p.V318M 0.13 deleterious(0) probably_damaging(1) TCGA-D5-7000-01 9 139699892 139699892 C T CCDC183 Missense_Mutation p.R311W 0.34 deleterious(0) possibly_damaging(0.785) TCGA-D5-7000-01 9 140267919 140267919 G T EXD3 Missense_Mutation p.Q85K 0.36 tolerated(0.16) benign(0.005) TCGA-D5-7000-01 9 95947802 95947802 C T WNK2 Silent p.F197F 0.38 TCGA-D5-7000-01 X 106172006 106172006 T A CLDN2 Missense_Mutation p.F183Y 0.36 tolerated(0.48) benign(0.157) TCGA-D5-7000-01 X 114414297 114414297 C G LRCH2 Missense_Mutation p.E213D 0.52 deleterious(0.03) probably_damaging(0.998) TCGA-D5-7000-01 X 114426852 114426852 G A RBMXL3 Missense_Mutation p.E950K 0.27 tolerated_low_confidence(0.22) benign(0.305) TCGA-D5-7000-01 X 119512617 119512617 A G ATP1B4 Missense_Mutation p.K301E 0.20 deleterious(0) probably_damaging(0.999) TCGA-D5-7000-01 X 128879210 128879210 G A XPNPEP2 Missense_Mutation p.R89H 0.24 deleterious(0.02) probably_damaging(0.967) TCGA-D5-7000-01 X 137791056 137791056 G T FGF13 Nonsense_Mutation p.Y84* 0.30 TCGA-D5-7000-01 X 138697171 138697171 C T MCF2 Missense_Mutation p.R471Q 0.22 tolerated(1) probably_damaging(0.997) TCGA-D5-7000-01 X 151899655 151899655 A T MAGEA12 3'UTR 0.20 TCGA-D5-7000-01 X 153580716 153580716 C T FLNA Missense_Mutation p.R2201H 0.26 tolerated(0.12) benign(0.39) TCGA-D5-7000-01 X 153581376 153581376 G A FLNA Silent p.R2073R 0.25 TCGA-D5-7000-01 X 153664362 153664362 C A ATP6AP1 3'UTR 0.13 TCGA-D5-7000-01 X 155255018 155255018 C T WASH6P RNA 0.32 TCGA-D5-7000-01 X 20194555 20194555 C A RPS6KA3 Missense_Mutation p.W332C 0.23 deleterious(0) probably_damaging(0.98) TCGA-D5-7000-01 X 34148847 34148847 G C FAM47A Missense_Mutation p.L517V 0.12 tolerated(0.37) possibly_damaging(0.567) TCGA-D5-7000-01 X 34148886 34148886 G C FAM47A Missense_Mutation p.L504V 0.11 tolerated(0.34) probably_damaging(0.953) TCGA-D5-7000-01 X 39916463 39916463 G A BCOR Nonsense_Mutation p.R1514* 0.55 TCGA-D5-7000-01 X 44920603 44920604 - G KDM6A Frame_Shift_Ins p.S456Vfs*29 0.33 TCGA-D5-7000-01 X 48780945 48780945 C T OTUD5 Missense_Mutation p.R520Q 0.28 tolerated(0.11) benign(0.005) TCGA-D5-7000-01 X 54496728 54496728 G A FGD1 Silent p.D274D 0.26 TCGA-D5-7000-01 X 6069223 6069223 G A NLGN4X Silent p.S95S 0.24 TCGA-D5-7000-01 X 69479314 69479314 G C P2RY4 Missense_Mutation p.A54G 0.20 tolerated(0.24) benign(0.001) TCGA-DM-A0X9-01 10 104171957 104171957 C T PSD Silent p.G592G 0.38 TCGA-DM-A0X9-01 10 105048340 105048340 G T INA Nonsense_Mutation p.E472* 0.42 TCGA-DM-A0X9-01 10 115380456 115380456 C T NRAP Silent p.R927R 0.29 TCGA-DM-A0X9-01 10 115661491 115661491 C T NHLRC2 Silent p.A402A 0.43 TCGA-DM-A0X9-01 10 119012958 119012958 C T SLC18A2 Silent p.V171V 0.35 TCGA-DM-A0X9-01 10 124895680 124895680 C T HMX3 Silent p.N38N 0.60 TCGA-DM-A0X9-01 10 63212667 63212667 C T TMEM26 Missense_Mutation p.R58H 0.36 tolerated(0.12) benign(0.025) TCGA-DM-A0X9-01 10 70406305 70406305 C T TET1 Silent p.N1273N 0.33 TCGA-DM-A0X9-01 11 108004592 108004592 T C ACAT1 Silent p.L56L 0.41 TCGA-DM-A0X9-01 11 1093853 1093853 C T MUC2 Missense_Mutation p.P1891L 0.20 unknown(0) TCGA-DM-A0X9-01 11 125280188 125280188 G A PKNOX2 Missense_Mutation p.A229T 0.10 tolerated(0.66) benign(0.003) TCGA-DM-A0X9-01 11 128350303 128350303 G C ETS1 Nonsense_Mutation p.Y302* 0.43 TCGA-DM-A0X9-01 11 128843058 128843058 C T ARHGAP32 Missense_Mutation p.D1101N 0.43 tolerated_low_confidence(0.14) benign(0.23) TCGA-DM-A0X9-01 11 17741739 17741739 C T MYOD1 Missense_Mutation p.S137L 0.42 deleterious(0) possibly_damaging(0.775) TCGA-DM-A0X9-01 11 20066924 20066924 G A NAV2 Missense_Mutation p.G1227R 0.34 tolerated(0.11) probably_damaging(1) TCGA-DM-A0X9-01 11 33079535 33079535 A G TCP11L1 Missense_Mutation p.D163G 0.45 deleterious(0) possibly_damaging(0.559) TCGA-DM-A0X9-01 11 55111552 55111552 G - OR4A16 Frame_Shift_Del p.M292Ifs*5 0.18 TCGA-DM-A0X9-01 11 55579592 55579592 C T OR5L1 Missense_Mutation p.S217F 0.38 deleterious(0) probably_damaging(0.996) TCGA-DM-A0X9-01 11 55595572 55595572 G T OR5L2 Missense_Mutation p.R293I 0.37 deleterious(0) probably_damaging(0.921) TCGA-DM-A0X9-01 11 57886552 57886552 C T OR9I1 Missense_Mutation p.R122H 0.30 deleterious(0.03) benign(0.082) TCGA-DM-A0X9-01 11 58170843 58170843 C G OR5B3 Missense_Mutation p.G14R 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-DM-A0X9-01 11 618095 618095 C A CDHR5 Missense_Mutation p.E659D 0.33 tolerated(0.3) benign(0.198) TCGA-DM-A0X9-01 11 6585251 6585251 G A DNHD1 Missense_Mutation p.C3394Y 0.24 benign(0.005) TCGA-DM-A0X9-01 11 6789924 6789924 C T OR2AG2 Missense_Mutation p.E89K 0.37 tolerated(0.42) benign(0.012) TCGA-DM-A0X9-01 11 86097134 86097134 C T CCDC81 Missense_Mutation p.R41W 0.48 deleterious(0.02) benign(0.006) TCGA-DM-A0X9-01 12 107090214 107090214 T C RFX4 Silent p.L284L 0.27 TCGA-DM-A0X9-01 12 109610126 109610126 C T ACACB Missense_Mutation p.P361L 0.56 deleterious(0) probably_damaging(0.998) TCGA-DM-A0X9-01 12 13717013 13717013 G A GRIN2B Silent p.D1053D 0.28 TCGA-DM-A0X9-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.56 deleterious(0.04) possibly_damaging(0.506) TCGA-DM-A0X9-01 12 40013091 40013091 C A ABCD2 Silent p.L109L 0.21 TCGA-DM-A0X9-01 12 44176159 44176159 G A IRAK4 Missense_Mutation p.G331S 0.27 deleterious(0.04) probably_damaging(0.992) TCGA-DM-A0X9-01 12 52115446 52115446 G A SCN8A Silent p.A584A 0.31 TCGA-DM-A0X9-01 12 52115526 52115526 G A SCN8A Missense_Mutation p.R611Q 0.25 deleterious(0.04) possibly_damaging(0.566) TCGA-DM-A0X9-01 12 52167991 52167991 A G SCN8A Missense_Mutation p.I1222V 0.23 deleterious(0.04) benign(0.005) TCGA-DM-A0X9-01 12 54936449 54936449 C T NCKAP1L Missense_Mutation p.R1122W 0.27 deleterious(0) probably_damaging(0.969) TCGA-DM-A0X9-01 12 56396470 56396470 G A SUOX Missense_Mutation p.G65D 0.24 deleterious(0.02) probably_damaging(0.937) TCGA-DM-A0X9-01 12 57594824 57594824 C T LRP1 Silent p.H3411H 0.29 TCGA-DM-A0X9-01 12 8994064 8994064 G A A2ML1 Missense_Mutation p.D394N 0.53 deleterious(0.01) possibly_damaging(0.795) TCGA-DM-A0X9-01 12 9162291 9162291 G A KLRG1 3'UTR 0.22 TCGA-DM-A0X9-01 12 96661006 96661006 G A ELK3 3'UTR 0.44 TCGA-DM-A0X9-01 13 32776122 32776122 T A FRY Missense_Mutation p.F1264Y 0.13 deleterious(0) benign(0.188) TCGA-DM-A0X9-01 13 84456216 84456216 C T SLITRK1 5'UTR 0.22 TCGA-DM-A0X9-01 13 88331019 88331019 C A SLITRK5 3'UTR 0.57 TCGA-DM-A0X9-01 13 96205101 96205101 G T CLDN10 Missense_Mutation p.V32L 0.23 deleterious(0.04) possibly_damaging(0.823) TCGA-DM-A0X9-01 14 105179783 105179783 C T INF2 Silent p.V960V 0.43 TCGA-DM-A0X9-01 14 105408086 105408086 C T AHNAK2 Missense_Mutation p.V4568I 0.41 benign(0.08) TCGA-DM-A0X9-01 14 33015108 33015108 C G AKAP6 Missense_Mutation p.L417V 0.07 deleterious(0.01) possibly_damaging(0.556) TCGA-DM-A0X9-01 14 69847300 69847300 C T ERH Silent p.K90K 0.36 TCGA-DM-A0X9-01 15 101971647 101971647 G A PCSK6 Missense_Mutation p.R178C 0.41 tolerated(0.17) possibly_damaging(0.84) TCGA-DM-A0X9-01 15 45564510 45564510 C T SLC28A2 Missense_Mutation p.R556W 0.42 deleterious(0) probably_damaging(1) TCGA-DM-A0X9-01 15 54919113 54919113 C T UNC13C Silent p.I2149I 0.46 TCGA-DM-A0X9-01 16 1756639 1756639 T C MAPK8IP3 Missense_Mutation p.L100P 0.87 deleterious(0.01) probably_damaging(0.995) TCGA-DM-A0X9-01 16 28944789 28944789 A G CD19 Missense_Mutation p.N265S 0.33 tolerated(0.06) benign(0.002) TCGA-DM-A0X9-01 16 30505643 30505643 G A ITGAL Missense_Mutation p.G442R 0.56 tolerated(0.57) benign(0.002) TCGA-DM-A0X9-01 16 33020656 33020656 C A IGHV3OR16-8 Missense_Mutation p.Q22K 0.31 tolerated_low_confidence(0.13) benign(0.059) TCGA-DM-A0X9-01 16 460341 460341 C T DECR2 Missense_Mutation p.R146C 0.46 deleterious(0) possibly_damaging(0.846) TCGA-DM-A0X9-01 16 56652567 56652567 C T MT1L RNA 0.39 TCGA-DM-A0X9-01 16 58560029 58560029 C T CNOT1 Missense_Mutation p.S2156N 0.40 tolerated(0.3) benign(0.012) TCGA-DM-A0X9-01 16 67644820 67644820 C T CTCF Missense_Mutation p.R29W 0.44 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DM-A0X9-01 16 705247 705247 G A WDR90 Intron 0.47 TCGA-DM-A0X9-01 16 77228780 77228780 C T MON1B Missense_Mutation p.R342C 0.31 deleterious(0.01) possibly_damaging(0.791) TCGA-DM-A0X9-01 16 89712939 89712939 G A CHMP1A Missense_Mutation p.R189W 0.31 deleterious(0) probably_damaging(0.928) TCGA-DM-A0X9-01 17 11607721 11607721 C A DNAH9 Missense_Mutation p.H1785N 0.49 probably_damaging(0.983) TCGA-DM-A0X9-01 17 26106006 26106006 C T NOS2 Missense_Mutation p.G361S 0.25 deleterious(0) probably_damaging(1) TCGA-DM-A0X9-01 17 27005931 27005931 C A SUPT6H Missense_Mutation p.D433E 0.39 tolerated(0.36) benign(0.175) TCGA-DM-A0X9-01 17 3854011 3854011 G T ATP2A3 Silent p.R174R 0.38 TCGA-DM-A0X9-01 17 3854012 3854012 C T ATP2A3 Silent p.L173L 0.39 TCGA-DM-A0X9-01 17 40828458 40828458 A G PLEKHH3 Missense_Mutation p.F42L 0.36 tolerated_low_confidence(0.18) unknown(0) TCGA-DM-A0X9-01 17 48445777 48445777 G T MRPL27 Intron 0.46 TCGA-DM-A0X9-01 17 56399712 56399712 A G BZRAP1 Missense_Mutation p.L460P 0.14 deleterious(0) possibly_damaging(0.864) TCGA-DM-A0X9-01 17 61988606 61988606 G A CSHL1 5'Flank 0.39 TCGA-DM-A0X9-01 17 7756648 7756648 G T KDM6B Nonsense_Mutation p.E1620* 0.40 TCGA-DM-A0X9-01 18 21492842 21492842 A C LAMA3 Missense_Mutation p.K2442N 0.50 probably_damaging(0.974) TCGA-DM-A0X9-01 18 25727712 25727712 T A CDH2 Nonsense_Mutation p.K33* 0.36 TCGA-DM-A0X9-01 18 28672218 28672218 C T DSC2 Missense_Mutation p.S67N 0.42 tolerated(0.07) benign(0.052) TCGA-DM-A0X9-01 19 11138592 11138592 T C SMARCA4 Silent p.F1116F 0.49 TCGA-DM-A0X9-01 19 11510565 11510565 G T RGL3 Missense_Mutation p.P577Q 0.49 deleterious(0.03) unknown(0) TCGA-DM-A0X9-01 19 13441076 13441076 C A CACNA1A Missense_Mutation p.A443S 0.15 benign(0.003) TCGA-DM-A0X9-01 19 14071913 14071913 C T DCAF15 3'UTR 0.47 TCGA-DM-A0X9-01 19 1432561 1432561 C T DAZAP1 Missense_Mutation p.P307L 0.43 deleterious(0.03) unknown(0) TCGA-DM-A0X9-01 19 15918076 15918076 C T OR10H1 Missense_Mutation p.V258I 0.35 tolerated(1) benign(0.032) TCGA-DM-A0X9-01 19 17013507 17013507 G A CPAMD8 Missense_Mutation p.A1593V 0.46 deleterious(0.01) benign(0.346) TCGA-DM-A0X9-01 19 30935959 30935959 C T ZNF536 Missense_Mutation p.P497L 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-DM-A0X9-01 19 33600707 33600707 C T GPATCH1 Missense_Mutation p.A457V 0.19 tolerated(0.09) benign(0.026) TCGA-DM-A0X9-01 19 36884562 36884562 T A ZFP82 Missense_Mutation p.E227V 0.13 deleterious(0.03) possibly_damaging(0.704) TCGA-DM-A0X9-01 19 38874086 38874086 A T PSMD8 3'UTR 0.11 TCGA-DM-A0X9-01 19 38964245 38964245 G A RYR1 Missense_Mutation p.E1332K 0.52 benign(0.215) TCGA-DM-A0X9-01 19 38989877 38989877 G A RYR1 Missense_Mutation p.V2341I 0.30 benign(0.16) TCGA-DM-A0X9-01 19 42860500 42860500 G A MEGF8 Missense_Mutation p.R1439H 0.25 tolerated(0.1) possibly_damaging(0.576) TCGA-DM-A0X9-01 19 52272624 52272624 G A FPR2 Missense_Mutation p.R238H 0.19 tolerated(0.1) possibly_damaging(0.458) TCGA-DM-A0X9-01 19 52869001 52869001 C T ZNF610 Nonsense_Mutation p.Q124* 0.18 TCGA-DM-A0X9-01 19 57839478 57839478 G C ZNF543 Missense_Mutation p.Q216H 0.22 deleterious(0.05) possibly_damaging(0.863) TCGA-DM-A0X9-01 19 58004771 58004771 T A ZNF419 Silent p.T283T 0.21 TCGA-DM-A0X9-01 19 58639289 58639289 G A ZNF329 Nonsense_Mutation p.R528* 0.67 TCGA-DM-A0X9-01 19 9362729 9362729 A C OR7E24 Missense_Mutation p.Y337S 0.43 tolerated_low_confidence(0.09) benign(0) TCGA-DM-A0X9-01 1 114354529 114354529 G A RSBN1 Missense_Mutation p.A169V 0.45 tolerated_low_confidence(0.14) possibly_damaging(0.682) TCGA-DM-A0X9-01 1 115260813 115260813 G A CSDE1 Missense_Mutation p.R838C 0.43 deleterious_low_confidence(0) benign(0.275) TCGA-DM-A0X9-01 1 147087703 147087703 G T BCL9 Splice_Site p.X220_splice 0.65 TCGA-DM-A0X9-01 1 158669665 158669665 A T OR6K2 Missense_Mutation p.Y260N 0.57 deleterious(0) probably_damaging(0.994) TCGA-DM-A0X9-01 1 176661296 176661296 A C PAPPA2 Missense_Mutation p.Q822H 0.25 deleterious(0) probably_damaging(1) TCGA-DM-A0X9-01 1 196796113 196796113 C T CFHR1 Silent p.T136T 0.58 TCGA-DM-A0X9-01 1 196920002 196920002 G C CFHR2 Missense_Mutation p.V92L 0.10 tolerated(0.28) probably_damaging(0.991) TCGA-DM-A0X9-01 1 215345506 215345506 G T KCNK2 Missense_Mutation p.G268V 0.19 deleterious(0) probably_damaging(1) TCGA-DM-A0X9-01 1 21889698 21889698 C T ALPL Silent p.S131S 0.41 TCGA-DM-A0X9-01 1 223568254 223568254 G A C1orf65 Silent p.Q479Q 0.27 TCGA-DM-A0X9-01 1 228491470 228491470 C T OBSCN Silent p.P4611P 0.54 TCGA-DM-A0X9-01 1 228596799 228596799 C T TRIM17 Intron 0.30 TCGA-DM-A0X9-01 1 233150430 233150430 C T PCNXL2 Missense_Mutation p.A1645T 0.18 deleterious(0.01) benign(0.15) TCGA-DM-A0X9-01 1 248814174 248814174 G T OR2T27 Missense_Mutation p.S4R 0.33 tolerated(0.47) benign(0.001) TCGA-DM-A0X9-01 1 26012962 26012962 G A MAN1C1 Missense_Mutation p.R191H 0.36 tolerated(0.15) benign(0.003) TCGA-DM-A0X9-01 1 27878536 27878536 C A AHDC1 Missense_Mutation p.G31C 0.32 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-DM-A0X9-01 1 36230158 36230159 - T CLSPN Frame_Shift_Ins p.N97Kfs*15 0.30 TCGA-DM-A0X9-01 1 37975111 37975111 C T MEAF6 Missense_Mutation p.R80Q 0.34 deleterious(0.01) probably_damaging(0.933) TCGA-DM-A0X9-01 1 46496755 46496755 C T MAST2 Missense_Mutation p.R929C 0.14 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-DM-A0X9-01 1 74832971 74832971 T G FPGT-TNNI3K Missense_Mutation p.H517Q 0.41 deleterious(0.05) possibly_damaging(0.648) TCGA-DM-A0X9-01 1 84403666 84403666 C T TTLL7 Missense_Mutation p.V253M 0.42 deleterious(0) probably_damaging(0.998) TCGA-DM-A0X9-01 20 36500377 36500377 G A CTNNBL1 Missense_Mutation p.E552K 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-DM-A0X9-01 20 41316217 41316217 C A PTPRT Intron 0.71 TCGA-DM-A0X9-01 20 45644879 45644879 G T EYA2 Missense_Mutation p.G120C 0.20 deleterious(0.01) probably_damaging(0.924) TCGA-DM-A0X9-01 20 480554 480554 G A CSNK2A1 Missense_Mutation p.R80C 0.35 deleterious(0) probably_damaging(0.997) TCGA-DM-A0X9-01 20 50140209 50140209 C T NFATC2 Missense_Mutation p.V191I 0.75 deleterious(0) probably_damaging(0.996) TCGA-DM-A0X9-01 20 50346472 50346472 G A ATP9A Silent p.P38P 0.24 TCGA-DM-A0X9-01 20 60887235 60887235 C T LAMA5 Silent p.A3166A 0.23 TCGA-DM-A0X9-01 20 60907695 60907695 G A LAMA5 Missense_Mutation p.R1121C 0.28 possibly_damaging(0.835) TCGA-DM-A0X9-01 20 62407097 62407097 C T ZBTB46 Missense_Mutation p.D386N 0.21 tolerated(0.13) benign(0.439) TCGA-DM-A0X9-01 20 7963135 7963135 G A TMX4 Silent p.G271G 0.17 TCGA-DM-A0X9-01 21 19698847 19698847 G T TMPRSS15 Missense_Mutation p.T608N 0.51 deleterious(0.02) probably_damaging(0.976) TCGA-DM-A0X9-01 21 31654565 31654565 C A KRTAP24-1 Missense_Mutation p.R229I 0.37 deleterious(0.01) possibly_damaging(0.766) TCGA-DM-A0X9-01 21 33074089 33074089 C T SCAF4 Silent p.Q200Q 0.46 TCGA-DM-A0X9-01 22 19120187 19120187 C A DGCR14 3'UTR 0.36 TCGA-DM-A0X9-01 22 29678407 29678407 A G EWSR1 Missense_Mutation p.T154A 0.08 tolerated(0.11) benign(0.443) TCGA-DM-A0X9-01 22 42607291 42607291 T C TCF20 Missense_Mutation p.I1341V 0.14 probably_damaging(0.982) TCGA-DM-A0X9-01 2 105472985 105472985 G A POU3F3 Silent p.T339T 0.43 TCGA-DM-A0X9-01 2 121107038 121107038 C T INHBB Missense_Mutation p.S271L 0.41 deleterious(0) probably_damaging(0.938) TCGA-DM-A0X9-01 2 1544469 1544469 C T TPO Missense_Mutation p.R908W 0.38 deleterious_low_confidence(0.02) benign(0.153) TCGA-DM-A0X9-01 2 15769812 15769812 C T DDX1 Silent p.N654N 0.41 TCGA-DM-A0X9-01 2 198495925 198495925 A G RFTN2 Silent p.Y246Y 0.39 TCGA-DM-A0X9-01 2 21231827 21231827 T G APOB Missense_Mutation p.N2638T 0.46 benign(0.02) TCGA-DM-A0X9-01 2 226447052 226447052 G A NYAP2 Missense_Mutation p.A307T 0.50 tolerated(0.48) benign(0.002) TCGA-DM-A0X9-01 2 228194338 228194338 C T MFF 5'UTR 0.38 TCGA-DM-A0X9-01 2 228384739 228384739 G T AGFG1 Missense_Mutation p.V113L 0.37 tolerated(0.05) possibly_damaging(0.473) TCGA-DM-A0X9-01 2 242694653 242694653 C T D2HGDH Intron 0.40 TCGA-DM-A0X9-01 2 27360570 27360570 C A C2orf53 Missense_Mutation p.A210S 0.44 tolerated(0.09) probably_damaging(0.997) TCGA-DM-A0X9-01 2 29255809 29255809 C T FAM179A Silent p.G674G 0.35 TCGA-DM-A0X9-01 2 32264520 32264520 C T DPY30 Silent p.E2E 0.39 TCGA-DM-A0X9-01 2 33007707 33007707 G A TTC27 Nonsense_Mutation p.W598* 0.33 TCGA-DM-A0X9-01 2 33740211 33740211 C A RASGRP3 Nonsense_Mutation p.S3* 0.41 TCGA-DM-A0X9-01 2 49190070 49190070 G C FSHR Silent p.T630T 0.35 TCGA-DM-A0X9-01 2 58388663 58388663 T C FANCL Silent p.L343L 0.20 TCGA-DM-A0X9-01 2 66665043 66665043 A G MEIS1 Missense_Mutation p.M63V 0.35 tolerated(0.33) benign(0.001) TCGA-DM-A0X9-01 2 74741933 74741933 G A TLX2 5'UTR 0.41 TCGA-DM-A0X9-01 2 80646724 80646724 G T CTNNA2 Nonsense_Mutation p.E430* 0.30 TCGA-DM-A0X9-01 2 85770408 85770408 T C MAT2A Intron 0.09 TCGA-DM-A0X9-01 2 89104376 89104376 C A ANKRD36BP2 RNA 0.27 TCGA-DM-A0X9-01 2 99149943 99149946 GACG - INPP4A Frame_Shift_Del p.T86Rfs*12 0.47 TCGA-DM-A0X9-01 3 128580600 128580600 C T RP11-723O4.9 5'Flank 0.40 TCGA-DM-A0X9-01 3 134644703 134644703 C T EPHB1 Missense_Mutation p.T35M 0.39 tolerated(0.13) possibly_damaging(0.473) TCGA-DM-A0X9-01 3 150908705 150908705 A G MED12L Missense_Mutation p.D652G 0.10 tolerated(0.11) benign(0.009) TCGA-DM-A0X9-01 3 161214691 161214691 G A OTOL1 Silent p.T32T 0.36 TCGA-DM-A0X9-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.31 deleterious(0.02) probably_damaging(0.959) TCGA-DM-A0X9-01 3 178948136 178948136 G A PIK3CA Missense_Mutation p.E970K 0.11 tolerated(0.51) benign(0.05) TCGA-DM-A0X9-01 3 21478561 21478561 A T ZNF385D Missense_Mutation p.S192T 0.41 tolerated(0.28) benign(0.013) TCGA-DM-A0X9-01 3 46497330 46497330 C T LTF Missense_Mutation p.R152H 0.33 tolerated(0.32) possibly_damaging(0.767) TCGA-DM-A0X9-01 3 52712580 52712580 G A PBRM1 Nonsense_Mutation p.R58* 0.43 TCGA-DM-A0X9-01 3 57131753 57131753 G A IL17RD Missense_Mutation p.R660W 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DM-A0X9-01 3 69990453 69990453 A T MITF Missense_Mutation p.M245L 0.41 tolerated(0.37) benign(0.012) TCGA-DM-A0X9-01 3 89390946 89390946 G T EPHA3 Nonsense_Mutation p.E338* 0.33 TCGA-DM-A0X9-01 3 95374304 95374304 C T MTHFD2P1 RNA 0.18 TCGA-DM-A0X9-01 4 126328107 126328107 G T FAT4 Nonsense_Mutation p.G1794* 0.38 TCGA-DM-A0X9-01 4 135121710 135121710 C T PABPC4L Silent p.E213E 0.40 TCGA-DM-A0X9-01 4 141622716 141622716 A G TBC1D9 Silent p.A61A 0.32 TCGA-DM-A0X9-01 4 152498843 152498843 T C FAM160A1 Missense_Mutation p.I116T 0.45 tolerated(0.05) benign(0.24) TCGA-DM-A0X9-01 4 68725335 68725335 C T TMPRSS11D Missense_Mutation p.V24I 0.33 tolerated(0.69) benign(0.009) TCGA-DM-A0X9-01 4 87022227 87022227 C T MAPK10 Silent p.L236L 0.37 TCGA-DM-A0X9-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.33 TCGA-DM-A0X9-01 5 112175480 112175480 G T APC Nonsense_Mutation p.E1397* 0.42 TCGA-DM-A0X9-01 5 140559640 140559640 G A PCDHB8 Silent p.P675P 0.51 TCGA-DM-A0X9-01 5 149676814 149676814 C T ARSI Missense_Mutation p.R558H 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.642) TCGA-DM-A0X9-01 5 32074107 32074107 C T PDZD2 Silent p.Y965Y 0.33 TCGA-DM-A0X9-01 5 3601178 3601178 C - IRX1 3'UTR 0.32 TCGA-DM-A0X9-01 5 80562106 80562106 C G CKMT2 3'UTR 0.35 TCGA-DM-A0X9-01 5 82815314 82815314 C - VCAN Frame_Shift_Del p.V398Wfs*22 0.09 TCGA-DM-A0X9-01 5 82834587 82834587 G T VCAN Missense_Mutation p.R1922M 0.33 deleterious(0.02) possibly_damaging(0.885) TCGA-DM-A0X9-01 5 9629297 9629297 T G TAS2R1 Missense_Mutation p.K283T 0.37 deleterious(0.05) probably_damaging(0.975) TCGA-DM-A0X9-01 6 117609583 117609583 T A ROS1 3'UTR 0.49 TCGA-DM-A0X9-01 6 135287600 135287600 T C HBS1L Missense_Mutation p.K637R 0.47 deleterious(0.03) benign(0.314) TCGA-DM-A0X9-01 6 136582055 136582055 T C BCLAF1 3'UTR 0.12 TCGA-DM-A0X9-01 6 139564069 139564069 C T TXLNB Missense_Mutation p.R550Q 0.38 tolerated_low_confidence(0.29) benign(0) TCGA-DM-A0X9-01 6 26056209 26056211 TCT - HIST1H1C In_Frame_Del p.K149del 0.37 TCGA-DM-A0X9-01 6 3225015 3225015 G A TUBB2B Silent p.F436F 0.31 TCGA-DM-A0X9-01 6 32947762 32947762 C T BRD2 Missense_Mutation p.H702Y 0.37 tolerated(0.05) benign(0.152) TCGA-DM-A0X9-01 6 39846201 39846201 G A DAAM2 Missense_Mutation p.R461H 0.39 deleterious(0.01) benign(0.323) TCGA-DM-A0X9-01 6 72892796 72892796 C T RIMS1 Missense_Mutation p.P541L 0.23 deleterious(0) possibly_damaging(0.623) TCGA-DM-A0X9-01 6 7583454 7583454 G T DSP Missense_Mutation p.D1987Y 0.31 probably_damaging(0.999) TCGA-DM-A0X9-01 6 90642386 90642386 G C BACH2 Missense_Mutation p.A756G 0.38 tolerated(0.09) possibly_damaging(0.583) TCGA-DM-A0X9-01 6 96656941 96656941 G A FUT9 3'UTR 0.12 TCGA-DM-A0X9-01 7 117375095 117375095 C T CTTNBP2 Missense_Mutation p.A1250T 0.27 tolerated(0.08) benign(0.032) TCGA-DM-A0X9-01 7 129094288 129094288 T A STRIP2 Missense_Mutation p.M209K 0.44 deleterious(0) benign(0.284) TCGA-DM-A0X9-01 7 132959756 132959756 G A EXOC4 Missense_Mutation p.D36N 0.46 tolerated(0.28) probably_damaging(1) TCGA-DM-A0X9-01 7 154863297 154863297 C T HTR5A Missense_Mutation p.R230C 0.44 deleterious(0.01) possibly_damaging(0.643) TCGA-DM-A0X9-01 7 20698756 20698756 G A ABCB5 Intron 0.43 TCGA-DM-A0X9-01 7 47874629 47874629 C T PKD1L1 Silent p.P2021P 0.40 TCGA-DM-A0X9-01 7 48506582 48506582 G A ABCA13 Missense_Mutation p.R4282H 0.42 benign(0) TCGA-DM-A0X9-01 7 50444492 50444492 G T IKZF1 Splice_Site p.X141_splice 0.43 TCGA-DM-A0X9-01 7 50514823 50514823 C T FIGNL1 Missense_Mutation p.A55T 0.46 tolerated(0.06) benign(0.4) TCGA-DM-A0X9-01 7 6441974 6441974 C T RAC1 Missense_Mutation p.A178V 0.38 deleterious(0) probably_damaging(0.986) TCGA-DM-A0X9-01 7 82387977 82387977 C A PCLO Missense_Mutation p.A5115S 0.41 unknown(0) TCGA-DM-A0X9-01 8 113349921 113349921 C T CSMD3 Missense_Mutation p.R2231Q 0.52 tolerated(0.39) probably_damaging(0.952) TCGA-DM-A0X9-01 8 133045354 133045354 G T OC90 Missense_Mutation p.A264D 0.22 deleterious(0.05) benign(0.072) TCGA-DM-A0X9-01 8 52323836 52323836 C A PXDNL Missense_Mutation p.G679V 0.57 deleterious(0) possibly_damaging(0.872) TCGA-DM-A0X9-01 8 68165830 68165830 A G ARFGEF1 Missense_Mutation p.Y852H 0.27 deleterious(0) probably_damaging(1) TCGA-DM-A0X9-01 8 77618583 77618583 G A ZFHX4 Missense_Mutation p.G754R 0.26 probably_damaging(0.98) TCGA-DM-A0X9-01 8 77775888 77775888 G T ZFHX4 Missense_Mutation p.G3313V 0.23 probably_damaging(0.976) TCGA-DM-A0X9-01 9 107581125 107581125 G A ABCA1 Missense_Mutation p.A1094V 0.39 deleterious(0) probably_damaging(1) TCGA-DM-A0X9-01 9 118969804 118969804 C G PAPPA Missense_Mutation p.F516L 0.25 deleterious(0.02) benign(0.418) TCGA-DM-A0X9-01 9 121971031 121971031 G A BRINP1 Missense_Mutation p.R371C 0.48 tolerated(0.09) benign(0.002) TCGA-DM-A0X9-01 9 136913365 136913365 G A BRD3 Missense_Mutation p.S309L 0.39 deleterious(0.03) benign(0.03) TCGA-DM-A0X9-01 9 214646 214646 G A C9orf66 Missense_Mutation p.R251W 0.53 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-DM-A0X9-01 9 5185579 5185579 G C INSL6 Silent p.S8S 0.41 TCGA-DM-A0X9-01 9 96209870 96209870 C G FAM120AOS 3'UTR 0.14 TCGA-DM-A0X9-01 9 97355963 97355963 G A FBP2 Missense_Mutation p.R16C 0.47 deleterious(0) probably_damaging(0.999) TCGA-DM-A0X9-01 X 102192407 102192407 C G RAB40AL Missense_Mutation p.T54S 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-DM-A0X9-01 X 103499517 103499517 C T ESX1 Missense_Mutation p.R5H 0.30 tolerated_low_confidence(0.18) benign(0.277) TCGA-DM-A0X9-01 X 106028343 106028343 C T RNF128 Missense_Mutation p.R261C 0.22 deleterious(0) probably_damaging(0.939) TCGA-DM-A0X9-01 X 107225095 107225095 C T TEX13B Missense_Mutation p.R88H 0.34 tolerated(1) benign(0.018) TCGA-DM-A0X9-01 X 107838750 107838750 G T COL4A5 Missense_Mutation p.D479Y 0.22 unknown(0) TCGA-DM-A0X9-01 X 108887259 108887259 T C ACSL4 Silent p.%3D 0.28 TCGA-DM-A0X9-01 X 114426506 114426506 A G RBMXL3 Silent p.S834S 0.26 TCGA-DM-A0X9-01 X 119004606 119004606 C G RNF113A Missense_Mutation p.G324A 0.26 tolerated(0.84) benign(0) TCGA-DM-A0X9-01 X 120182600 120182600 A T GLUD2 Missense_Mutation p.Q354H 0.59 deleterious(0.02) benign(0.016) TCGA-DM-A0X9-01 X 129271397 129271397 A C AIFM1 Intron 0.23 TCGA-DM-A0X9-01 X 134986664 134986664 A G SAGE1 Silent p.E83E 0.28 TCGA-DM-A0X9-01 X 135738558 135738558 C T CD40LG Silent p.A130A 0.51 TCGA-DM-A0X9-01 X 142717784 142717784 T C SLITRK4 Missense_Mutation p.K381E 0.27 deleterious(0.02) probably_damaging(0.98) TCGA-DM-A0X9-01 X 147015162 147015162 G T FMR1 Intron 0.35 TCGA-DM-A0X9-01 X 152734720 152734720 C T TREX2 Splice_Site 0.29 TCGA-DM-A0X9-01 X 19705743 19705743 C T SH3KBP1 Intron 0.50 TCGA-DM-A0X9-01 X 27998668 27998668 C G DCAF8L1 Missense_Mutation p.D262H 0.36 deleterious(0) probably_damaging(0.992) TCGA-DM-A0X9-01 X 36254868 36254869 - A CXorf30 5'UTR 0.23 TCGA-DM-A0X9-01 X 37029487 37029487 G T FAM47C Missense_Mutation p.A1002S 0.29 tolerated(0.07) benign(0.332) TCGA-DM-A0X9-01 X 54814962 54814962 A T ITIH6 Missense_Mutation p.F246Y 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-DM-A0X9-01 X 55479865 55479865 G A MAGEH1 3'UTR 0.24 TCGA-DM-A0X9-01 X 57021289 57021289 T G SPIN3 Missense_Mutation p.K31T 0.54 tolerated(0.11) possibly_damaging(0.488) TCGA-DM-A0X9-01 X 69282697 69282697 G A OTUD6A Missense_Mutation p.R108H 0.46 tolerated(0.1) benign(0.066) TCGA-DM-A0X9-01 X 70836318 70836318 C T CXCR3 Missense_Mutation p.R382H 0.29 tolerated(0.11) benign(0.013) TCGA-DM-A0XD-01 10 122668368 122668368 C T WDR11 3'UTR 0.36 TCGA-DM-A0XD-01 10 16930437 16930441 AAGTC - CUBN Frame_Shift_Del p.L2960Ffs*41 0.36 TCGA-DM-A0XD-01 10 99350484 99350484 C T C10orf62 3'UTR 0.62 TCGA-DM-A0XD-01 11 103173912 103173912 C T DYNC2H1 Missense_Mutation p.P3736L 0.32 possibly_damaging(0.844) TCGA-DM-A0XD-01 11 105850598 105850598 G A GRIA4 3'UTR 0.27 TCGA-DM-A0XD-01 11 122929010 122929011 TC - HSPA8 Frame_Shift_Del p.K569Dfs*6 0.26 TCGA-DM-A0XD-01 11 126146105 126146105 C T FOXRED1 Missense_Mutation p.P321L 0.25 deleterious(0.01) benign(0.365) TCGA-DM-A0XD-01 11 30032037 30032037 T G KCNA4 3'UTR 0.44 TCGA-DM-A0XD-01 11 4615697 4615697 A C OR52I1 Missense_Mutation p.Q143H 0.22 tolerated(0.18) benign(0.033) TCGA-DM-A0XD-01 11 62484482 62484482 G A HNRNPUL2 Nonsense_Mutation p.R654* 0.38 TCGA-DM-A0XD-01 11 64064453 64064453 G T KCNK4 Missense_Mutation p.G98V 0.36 deleterious(0) probably_damaging(0.997) TCGA-DM-A0XD-01 11 64852251 64852251 C T ZFPL1 Silent p.C27C 0.38 TCGA-DM-A0XD-01 11 6591962 6591962 G A DNHD1 Missense_Mutation p.R4407Q 0.32 benign(0.204) TCGA-DM-A0XD-01 11 67290854 67290854 G A CABP2 5'UTR 0.45 TCGA-DM-A0XD-01 11 77383214 77383214 C T RSF1 Silent p.R1208R 0.28 TCGA-DM-A0XD-01 11 99827583 99827583 C T CNTN5 Missense_Mutation p.A240V 0.30 tolerated(0.17) benign(0.113) TCGA-DM-A0XD-01 12 121134118 121134118 G A MLEC Splice_Site p.X217_splice 0.27 TCGA-DM-A0XD-01 12 18435350 18435350 C T PIK3C2G Missense_Mutation p.S112F 0.24 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-DM-A0XD-01 12 24736690 24736690 C T LINC00477 RNA 0.15 TCGA-DM-A0XD-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.49 deleterious(0.04) possibly_damaging(0.506) TCGA-DM-A0XD-01 12 26809376 26809376 C T ITPR2 Silent p.S766S 0.60 TCGA-DM-A0XD-01 12 4923022 4923022 C T KCNA6 3'UTR 0.19 TCGA-DM-A0XD-01 12 53298481 53298481 G T KRT8 Silent p.I123I 0.21 TCGA-DM-A0XD-01 12 57574968 57574968 C T LRP1 Silent p.V1852V 0.44 TCGA-DM-A0XD-01 12 58204891 58204891 C T AVIL Missense_Mutation p.A120T 0.24 deleterious(0.02) possibly_damaging(0.577) TCGA-DM-A0XD-01 12 6839873 6839873 A G COPS7A Silent p.A225A 0.41 TCGA-DM-A0XD-01 12 80647296 80647296 G A OTOGL Missense_Mutation p.G437S 0.22 tolerated(0.85) benign(0.001) TCGA-DM-A0XD-01 13 111932975 111932975 C T ARHGEF7 Missense_Mutation p.T580M 0.37 tolerated(0.12) benign(0.411) TCGA-DM-A0XD-01 13 114188646 114188646 A T TMCO3 Intron 0.30 TCGA-DM-A0XD-01 13 38172861 38172861 C A POSTN Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) unknown(0) TCGA-DM-A0XD-01 13 58208228 58208228 C T PCDH17 Silent p.I516I 0.43 TCGA-DM-A0XD-01 13 88329539 88329539 G A SLITRK5 Silent p.A632A 0.27 TCGA-DM-A0XD-01 13 94482577 94482577 T A GPC6 Missense_Mutation p.F164I 0.31 deleterious(0) probably_damaging(0.999) TCGA-DM-A0XD-01 13 99890687 99890687 C T UBAC2 Missense_Mutation p.A13V 0.14 deleterious(0) probably_damaging(0.986) TCGA-DM-A0XD-01 14 103573857 103573857 C T EXOC3L4 Missense_Mutation p.R560C 0.25 deleterious(0) possibly_damaging(0.717) TCGA-DM-A0XD-01 14 105858023 105858023 G A PACS2 Silent p.P725P 0.53 TCGA-DM-A0XD-01 14 20502622 20502622 G A OR4K13 Missense_Mutation p.S99F 0.35 deleterious(0.01) benign(0.223) TCGA-DM-A0XD-01 14 65009180 65009180 G A HSPA2 Missense_Mutation p.R538Q 0.37 deleterious_low_confidence(0.02) benign(0.233) TCGA-DM-A0XD-01 14 76012969 76012969 C T BATF Silent p.H111H 0.23 TCGA-DM-A0XD-01 14 86089903 86089903 G A FLRT2 3'UTR 0.32 TCGA-DM-A0XD-01 15 101170215 101170215 G A ASB7 Missense_Mutation p.R262Q 0.23 tolerated_low_confidence(0.18) possibly_damaging(0.597) TCGA-DM-A0XD-01 15 28000307 28000307 T G OCA2 3'UTR 0.33 TCGA-DM-A0XD-01 15 38228542 38228542 G A TMCO5A Silent p.L6L 0.40 TCGA-DM-A0XD-01 15 54793106 54793106 T C UNC13C Missense_Mutation p.F1744S 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DM-A0XD-01 15 75980475 75980475 G A CSPG4 Silent p.S977S 0.23 TCGA-DM-A0XD-01 15 79092794 79092794 C T ADAMTS7 Missense_Mutation p.A66T 0.48 tolerated(0.22) benign(0.016) TCGA-DM-A0XD-01 15 90610963 90610963 C G ZNF710 Silent p.G198G 0.64 TCGA-DM-A0XD-01 15 90611007 90611007 C A ZNF710 Missense_Mutation p.P213H 0.46 tolerated_low_confidence(0.11) benign(0.043) TCGA-DM-A0XD-01 15 91337416 91337416 T C BLM Silent p.H1013H 0.33 TCGA-DM-A0XD-01 16 28917479 28917479 C T RABEP2 Silent p.A428A 0.36 TCGA-DM-A0XD-01 16 30750176 30750176 C T SRCAP Nonsense_Mutation p.R2939* 0.35 TCGA-DM-A0XD-01 16 3100089 3100089 G T MMP25 Silent p.R104R 0.35 TCGA-DM-A0XD-01 16 31089320 31089320 G A ZNF646 Missense_Mutation p.E559K 0.31 tolerated(0.08) benign(0.006) TCGA-DM-A0XD-01 16 51175680 51175680 G T SALL1 Missense_Mutation p.S151R 0.36 tolerated(0.47) benign(0.001) TCGA-DM-A0XD-01 16 55362806 55362806 C T IRX6 Missense_Mutation p.R306C 0.37 deleterious(0.01) possibly_damaging(0.487) TCGA-DM-A0XD-01 16 57996884 57996884 C T CNGB1 Silent p.P125P 0.30 TCGA-DM-A0XD-01 16 67964159 67964159 G A CTRL Missense_Mutation p.R188W 0.45 deleterious(0) possibly_damaging(0.846) TCGA-DM-A0XD-01 16 68405863 68405863 C T SMPD3 Silent p.S74S 0.42 TCGA-DM-A0XD-01 16 69942824 69942824 C T WWP2 Intron 0.25 TCGA-DM-A0XD-01 16 70955004 70955004 G A HYDIN Silent p.G2425G 0.33 TCGA-DM-A0XD-01 16 72991866 72991866 G A ZFHX3 Missense_Mutation p.R727C 0.27 probably_damaging(0.998) TCGA-DM-A0XD-01 16 76523666 76523666 T - CNTNAP4 Frame_Shift_Del p.F584Sfs*42 0.25 TCGA-DM-A0XD-01 16 76572228 76572228 G T CNTNAP4 Missense_Mutation p.A998S 0.22 tolerated(0.46) possibly_damaging(0.536) TCGA-DM-A0XD-01 16 86601345 86601345 G A FOXC2 Missense_Mutation p.R135H 0.34 deleterious(0) probably_damaging(0.998) TCGA-DM-A0XD-01 16 9012926 9012926 G A USP7 Silent p.L228L 0.30 TCGA-DM-A0XD-01 17 39657988 39657988 C T KRT13 Missense_Mutation p.G418D 0.46 tolerated(0.12) benign(0.008) TCGA-DM-A0XD-01 17 39975852 39975852 C A FKBP10 Missense_Mutation p.L330M 0.09 deleterious(0) probably_damaging(1) TCGA-DM-A0XD-01 17 53121047 53121047 A G STXBP4 Intron 0.30 TCGA-DM-A0XD-01 17 62041948 62041948 G A SCN4A Silent p.A444A 0.08 TCGA-DM-A0XD-01 17 67243572 67243572 C T ABCA5 3'UTR 0.40 TCGA-DM-A0XD-01 17 70119683 70119683 G A SOX9 Splice_Site p.X229_splice 0.29 TCGA-DM-A0XD-01 17 7578177 7578177 C G TP53 Missense_Mutation p.E224D 0.51 tolerated(0.06) benign(0.085) TCGA-DM-A0XD-01 17 9850238 9850238 G A GAS7 Silent p.T196T 0.33 TCGA-DM-A0XD-01 18 48190733 48190733 C T MAPK4 Silent p.R135R 0.57 TCGA-DM-A0XD-01 19 12267379 12267379 G A ZNF625 5'UTR 0.27 TCGA-DM-A0XD-01 19 17387389 17387389 C T BABAM1 Missense_Mutation p.R219C 0.36 deleterious(0) probably_damaging(1) TCGA-DM-A0XD-01 19 17743702 17743702 C T UNC13A Missense_Mutation p.R1106H 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-DM-A0XD-01 19 19737851 19737851 C T LPAR2 Silent p.A81A 0.29 TCGA-DM-A0XD-01 19 21720457 21720457 G C ZNF429 Missense_Mutation p.E534D 0.36 deleterious(0.05) benign(0.021) TCGA-DM-A0XD-01 19 22786139 22786139 G T AC011467.1 3'Flank 0.18 TCGA-DM-A0XD-01 19 2936656 2936656 G A ZNF77 Silent p.D59D 0.26 TCGA-DM-A0XD-01 19 2987165 2987165 A T TLE6 Missense_Mutation p.D157V 0.30 deleterious(0) probably_damaging(0.996) TCGA-DM-A0XD-01 19 37309220 37309220 T C ZNF790 3'UTR 0.21 TCGA-DM-A0XD-01 19 41040229 41040229 C G SPTBN4 Missense_Mutation p.N1446K 0.08 deleterious(0) probably_damaging(0.967) TCGA-DM-A0XD-01 19 4512840 4512840 C T PLIN4 Missense_Mutation p.V364M 0.31 tolerated(0.51) unknown(0) TCGA-DM-A0XD-01 19 46733623 46733623 G T IGFL1 Missense_Mutation p.D58Y 0.22 deleterious(0) probably_damaging(0.927) TCGA-DM-A0XD-01 19 48255791 48255791 A G GLTSCR2 Missense_Mutation p.K231R 0.15 deleterious(0.03) possibly_damaging(0.903) TCGA-DM-A0XD-01 19 51330247 51330247 C T KLK15 Missense_Mutation p.R123H 0.29 tolerated(0.11) benign(0.06) TCGA-DM-A0XD-01 19 53014430 53014430 A C ZNF578 Missense_Mutation p.K266Q 0.27 deleterious(0) probably_damaging(0.96) TCGA-DM-A0XD-01 19 54401270 54401270 G A PRKCG Missense_Mutation p.D333N 0.32 tolerated(0.26) benign(0.003) TCGA-DM-A0XD-01 19 617580 617580 A G POLRMT Missense_Mutation p.F1191L 0.09 deleterious(0.01) possibly_damaging(0.803) TCGA-DM-A0XD-01 19 6678186 6678186 G A C3 Silent p.S1609S 0.40 TCGA-DM-A0XD-01 1 101705535 101705535 C T S1PR1 Missense_Mutation p.P332L 0.26 tolerated(0.71) benign(0.001) TCGA-DM-A0XD-01 1 104297334 104297334 C A AMY1C Intron 0.11 TCGA-DM-A0XD-01 1 118501976 118501976 G A WDR3 Missense_Mutation p.S913N 0.30 tolerated(0.1) benign(0) TCGA-DM-A0XD-01 1 144828733 144828733 G A NBPF9 Silent p.T667T 0.33 TCGA-DM-A0XD-01 1 149879665 149879665 G A SV2A Silent p.R491R 0.23 TCGA-DM-A0XD-01 1 154544274 154544274 G A CHRNB2 Silent p.S325S 0.35 TCGA-DM-A0XD-01 1 160141172 160141172 G C ATP1A4 Missense_Mutation p.M541I 0.34 tolerated(0.39) benign(0.126) TCGA-DM-A0XD-01 1 181727219 181727219 C T CACNA1E Missense_Mutation p.A1489V 0.34 deleterious(0.04) possibly_damaging(0.483) TCGA-DM-A0XD-01 1 182908574 182908574 G A SHCBP1L Intron 0.31 TCGA-DM-A0XD-01 1 196973807 196973807 T C CFHR5 Silent p.C449C 0.34 TCGA-DM-A0XD-01 1 210857201 210857201 C T KCNH1 Missense_Mutation p.V798I 0.48 tolerated_low_confidence(0.44) benign(0.001) TCGA-DM-A0XD-01 1 222717196 222717196 G A HHIPL2 Silent p.P219P 0.31 TCGA-DM-A0XD-01 1 2252979 2252979 G A MORN1 Missense_Mutation p.P446L 0.35 deleterious(0) probably_damaging(0.973) TCGA-DM-A0XD-01 1 229568781 229568781 C T ACTA1 Missense_Mutation p.A28T 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.877) TCGA-DM-A0XD-01 1 23111089 23111089 T C EPHB2 Missense_Mutation p.F111L 0.11 deleterious(0.03) probably_damaging(1) TCGA-DM-A0XD-01 1 237843858 237843858 G C RYR2 Missense_Mutation p.E3000Q 0.42 probably_damaging(0.987) TCGA-DM-A0XD-01 1 26315993 26315993 C T PAFAH2 Missense_Mutation p.E64K 0.34 tolerated(0.56) benign(0.008) TCGA-DM-A0XD-01 1 27056337 27056338 CT - ARID1A Frame_Shift_Del p.S446Lfs*176 0.28 TCGA-DM-A0XD-01 1 32146665 32146665 G A COL16A1 Missense_Mutation p.R848C 0.30 unknown(0) TCGA-DM-A0XD-01 1 34083182 34083182 G A CSMD2 Missense_Mutation p.P1915S 0.30 deleterious(0) probably_damaging(0.919) TCGA-DM-A0XD-01 1 4772348 4772348 G A AJAP1 Missense_Mutation p.A140T 0.52 tolerated(0.63) benign(0.017) TCGA-DM-A0XD-01 1 59811931 59811931 G A FGGY Missense_Mutation p.R109Q 0.28 tolerated(0.62) benign(0.396) TCGA-DM-A0XD-01 1 92174305 92174305 G A TGFBR3 Silent p.D734D 0.25 TCGA-DM-A0XD-01 20 42815178 42815178 G A JPH2 Silent p.S56S 0.42 TCGA-DM-A0XD-01 20 45853077 45853077 T A ZMYND8 Missense_Mutation p.N1004I 0.51 deleterious(0) possibly_damaging(0.813) TCGA-DM-A0XD-01 20 61593989 61593989 G A SLC17A9 Missense_Mutation p.G171R 0.54 deleterious(0) probably_damaging(0.996) TCGA-DM-A0XD-01 20 7864203 7864203 A - HAO1 3'UTR 0.40 TCGA-DM-A0XD-01 21 27134677 27134677 G A GABPA Splice_Site p.X268_splice 0.27 TCGA-DM-A0XD-01 21 35257411 35257411 C T ITSN1 Silent p.R1581R 0.26 TCGA-DM-A0XD-01 21 36042814 36042814 G A CLIC6 Missense_Mutation p.R376Q 0.28 tolerated(0.52) benign(0.001) TCGA-DM-A0XD-01 22 38823854 38823854 G A KCNJ4 Missense_Mutation p.A95V 0.27 tolerated(0.4) benign(0.028) TCGA-DM-A0XD-01 22 46658133 46658133 C T PKDREJ Missense_Mutation p.D363N 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-DM-A0XD-01 22 50563974 50563974 G A MOV10L1 Missense_Mutation p.E575K 0.27 deleterious(0) probably_damaging(0.959) TCGA-DM-A0XD-01 2 107423177 107423177 G A ST6GAL2 Missense_Mutation p.A516V 0.28 benign(0.167) TCGA-DM-A0XD-01 2 109403233 109403233 T C CCDC138 5'UTR 0.43 TCGA-DM-A0XD-01 2 177054888 177054888 G A HOXD1 3'UTR 0.23 TCGA-DM-A0XD-01 2 179543158 179543158 T C TTN Missense_Mutation p.E11298G 0.34 TCGA-DM-A0XD-01 2 179592836 179592836 C A TTN Splice_Site p.X6572_splice 0.25 TCGA-DM-A0XD-01 2 202466515 202466515 C T ALS2CR11 Missense_Mutation p.D155N 0.20 tolerated(1) benign(0) TCGA-DM-A0XD-01 2 230675921 230675921 C A TRIP12 Splice_Site p.X615_splice 0.29 TCGA-DM-A0XD-01 2 233200564 233200564 G A DIS3L2 Missense_Mutation p.E826K 0.28 tolerated(0.36) benign(0.011) TCGA-DM-A0XD-01 2 241514446 241514446 G A RNPEPL1 Splice_Site p.X199_splice 0.41 TCGA-DM-A0XD-01 2 42994787 42994787 G A HAAO Missense_Mutation p.R244W 0.40 deleterious(0) benign(0.038) TCGA-DM-A0XD-01 2 50755764 50755764 G T NRXN1 Silent p.S831S 0.28 TCGA-DM-A0XD-01 2 55523640 55523640 T G CCDC88A Missense_Mutation p.Q1614H 0.22 tolerated(0.85) benign(0.007) TCGA-DM-A0XD-01 2 5835179 5835179 G A SOX11 3'UTR 0.37 TCGA-DM-A0XD-01 2 63348942 63348942 C A WDPCP 3'UTR 0.31 TCGA-DM-A0XD-01 2 80085218 80085218 G A CTNNA2 Silent p.A126A 0.24 TCGA-DM-A0XD-01 3 100275642 100275642 C T TMEM45A Silent p.L77L 0.32 TCGA-DM-A0XD-01 3 113081763 113081763 A C WDR52 Intron 0.67 TCGA-DM-A0XD-01 3 136141317 136141317 G A STAG1 Nonsense_Mutation p.R658* 0.38 TCGA-DM-A0XD-01 3 147113942 147113942 T C ZIC4 Missense_Mutation p.I179V 0.30 tolerated(0.14) possibly_damaging(0.558) TCGA-DM-A0XD-01 3 148459317 148459317 C G AGTR1 Missense_Mutation p.I165M 0.36 tolerated(0.18) probably_damaging(0.933) TCGA-DM-A0XD-01 3 148459335 148459335 C G AGTR1 Missense_Mutation p.F171L 0.36 tolerated(0.56) benign(0.016) TCGA-DM-A0XD-01 3 15529721 15529721 C T COLQ Missense_Mutation p.G105S 0.53 deleterious(0.01) unknown(0) TCGA-DM-A0XD-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.34 deleterious(0.02) probably_damaging(0.959) TCGA-DM-A0XD-01 3 46875157 46875157 C T PRSS42 Missense_Mutation p.R75Q 0.42 tolerated(1) benign(0.006) TCGA-DM-A0XD-01 3 49924771 49924771 C T MST1R Missense_Mutation p.R1391Q 0.33 deleterious_low_confidence(0.03) unknown(0) TCGA-DM-A0XD-01 3 52610557 52610557 C T PBRM1 Missense_Mutation p.G1206R 0.38 deleterious(0.02) probably_damaging(0.98) TCGA-DM-A0XD-01 3 53804490 53804490 C T CACNA1D Missense_Mutation p.R1339C 0.32 deleterious(0) probably_damaging(0.999) TCGA-DM-A0XD-01 3 54676190 54676190 G T CACNA2D3 Missense_Mutation p.Q363H 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-DM-A0XD-01 3 68782210 68782210 G T FAM19A4 3'UTR 0.29 TCGA-DM-A0XD-01 3 77526615 77526615 G C ROBO2 Missense_Mutation p.G163R 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-DM-A0XD-01 4 126412593 126412593 A C FAT4 Missense_Mutation p.Q4872H 0.33 probably_damaging(0.993) TCGA-DM-A0XD-01 4 134072244 134072244 G A PCDH10 Missense_Mutation p.D317N 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-DM-A0XD-01 4 135121880 135121880 T C PABPC4L Missense_Mutation p.N157D 0.30 deleterious(0) probably_damaging(0.998) TCGA-DM-A0XD-01 4 153249465 153249465 G A FBXW7 Missense_Mutation p.S438F 0.37 deleterious(0) probably_damaging(0.999) TCGA-DM-A0XD-01 4 153250848 153250848 T - FBXW7 Frame_Shift_Del p.V405Ffs*10 0.20 TCGA-DM-A0XD-01 4 1722454 1722454 C G TMEM129 Silent p.L37L 0.23 TCGA-DM-A0XD-01 4 183673030 183673030 G A TENM3 Missense_Mutation p.R1236H 0.30 tolerated(0.31) benign(0.034) TCGA-DM-A0XD-01 4 66189756 66189756 T C EPHA5 3'UTR 0.33 TCGA-DM-A0XD-01 4 66467435 66467435 G A EPHA5 Silent p.A278A 0.38 TCGA-DM-A0XD-01 4 68788578 68788578 G A TMPRSS11A Missense_Mutation p.A199V 0.23 deleterious(0) benign(0.315) TCGA-DM-A0XD-01 4 82061752 82061752 C A PRKG2 Missense_Mutation p.K493N 0.32 deleterious(0.02) possibly_damaging(0.601) TCGA-DM-A0XD-01 4 84255820 84255820 A T HPSE Missense_Mutation p.V39E 0.30 deleterious(0) possibly_damaging(0.544) TCGA-DM-A0XD-01 4 88415068 88415068 C A SPARCL1 Missense_Mutation p.S295I 0.30 deleterious(0.02) possibly_damaging(0.595) TCGA-DM-A0XD-01 4 89189443 89189444 - C PPM1K Frame_Shift_Ins p.Q251Afs*20 0.27 TCGA-DM-A0XD-01 5 112174096 112174096 C A APC Nonsense_Mutation p.Y935* 0.37 TCGA-DM-A0XD-01 5 112175628 112175628 C - APC Frame_Shift_Del p.A1446Vfs*27 0.29 TCGA-DM-A0XD-01 5 127522190 127522191 - TC SLC12A2 Frame_Shift_Ins p.P1171Sfs*18 0.26 TCGA-DM-A0XD-01 5 132052638 132052638 G A KIF3A Missense_Mutation p.R219C 0.31 deleterious(0) probably_damaging(1) TCGA-DM-A0XD-01 5 133643870 133643870 C T CDKL3 Missense_Mutation p.M441I 0.20 tolerated(0.56) benign(0.001) TCGA-DM-A0XD-01 5 134870973 134870973 G A NEUROG1 Silent p.F136F 0.32 TCGA-DM-A0XD-01 5 13769625 13769625 G A DNAH5 Silent p.N3235N 0.40 TCGA-DM-A0XD-01 5 140256501 140256501 G A PCDHA12 Missense_Mutation p.A482T 0.33 deleterious_low_confidence(0.02) benign(0.396) TCGA-DM-A0XD-01 5 140744574 140744574 C T PCDHGA5 Missense_Mutation p.T226M 0.24 tolerated_low_confidence(0.07) benign(0.046) TCGA-DM-A0XD-01 5 140811076 140811076 C T PCDHGA12 Silent p.S250S 0.33 TCGA-DM-A0XD-01 5 149245742 149245742 G A PDE6A Silent p.F783F 0.22 TCGA-DM-A0XD-01 5 16453197 16453197 C T ZNF622 Missense_Mutation p.A411T 0.31 tolerated(0.4) benign(0.007) TCGA-DM-A0XD-01 5 176524811 176524811 G A FGFR4 3'UTR 0.31 TCGA-DM-A0XD-01 5 176719126 176719126 G A NSD1 Missense_Mutation p.A2144T 0.40 deleterious(0.02) probably_damaging(0.919) TCGA-DM-A0XD-01 5 178770828 178770828 G A ADAMTS2 Silent p.V158V 0.32 TCGA-DM-A0XD-01 5 19473538 19473538 C G CDH18 Missense_Mutation p.D724H 0.31 deleterious(0.01) probably_damaging(0.964) TCGA-DM-A0XD-01 5 33649669 33649669 G A ADAMTS12 Missense_Mutation p.R442C 0.22 deleterious(0) probably_damaging(0.998) TCGA-DM-A0XD-01 5 39202838 39202838 G T FYB Missense_Mutation p.D85E 0.32 tolerated(0.95) benign(0.015) TCGA-DM-A0XD-01 5 63256970 63256970 G T HTR1A Missense_Mutation p.H193N 0.32 tolerated(0.31) benign(0.143) TCGA-DM-A0XD-01 5 66459075 66459075 C T MAST4 Silent p.P1356P 0.34 TCGA-DM-A0XD-01 5 76749658 76749658 G A WDR41 Silent p.S169S 0.28 TCGA-DM-A0XD-01 5 78181442 78181442 C T ARSB Silent p.K369K 0.21 TCGA-DM-A0XD-01 5 9052034 9052034 C T SEMA5A Silent p.G932G 0.23 TCGA-DM-A0XD-01 6 116892719 116892719 G A RWDD1 5'UTR 0.24 TCGA-DM-A0XD-01 6 163987152 163987152 A G QKI Intron 0.32 TCGA-DM-A0XD-01 6 27861356 27861356 C G HIST1H2BO Missense_Mutation p.S39C 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.886) TCGA-DM-A0XD-01 6 35782474 35782474 C T LHFPL5 Silent p.D188D 0.76 TCGA-DM-A0XD-01 6 37617957 37617957 G A MDGA1 Missense_Mutation p.R513C 0.35 deleterious(0) possibly_damaging(0.828) TCGA-DM-A0XD-01 6 48036274 48036274 G A PTCHD4 Missense_Mutation p.R40W 0.27 deleterious(0) probably_damaging(0.988) TCGA-DM-A0XD-01 6 6197481 6197481 G A F13A1 Silent p.D397D 0.19 TCGA-DM-A0XD-01 7 115580475 115580475 C T TFEC 3'UTR 0.50 TCGA-DM-A0XD-01 7 28857719 28857719 C A CREB5 Missense_Mutation p.A429D 0.43 deleterious(0) unknown(0) TCGA-DM-A0XD-01 7 38516524 38516524 C A AMPH Missense_Mutation p.A148S 0.25 deleterious(0) probably_damaging(0.999) TCGA-DM-A0XD-01 7 42004061 42004061 C T GLI3 Missense_Mutation p.R1537H 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-DM-A0XD-01 7 57188098 57188098 T C ZNF479 Missense_Mutation p.R342G 0.23 tolerated(0.09) benign(0) TCGA-DM-A0XD-01 7 57194316 57194316 C A ZNF479 Missense_Mutation p.R50I 0.49 deleterious(0) probably_damaging(0.93) TCGA-DM-A0XD-01 7 6082571 6082571 C A EIF2AK1 Nonsense_Mutation p.E262* 0.25 TCGA-DM-A0XD-01 7 82545878 82545878 C A PCLO Missense_Mutation p.R3808S 0.64 unknown(0) TCGA-DM-A0XD-01 7 94293992 94293992 C A PEG10 3'UTR 0.19 TCGA-DM-A0XD-01 7 98257786 98257786 C T NPTX2 Missense_Mutation p.R381C 0.64 deleterious(0) probably_damaging(0.973) TCGA-DM-A0XD-01 8 121312972 121312972 G A COL14A1 Missense_Mutation p.R1439K 0.38 deleterious(0.03) possibly_damaging(0.694) TCGA-DM-A0XD-01 8 121312973 121312973 A G COL14A1 Silent p.R1439R 0.37 TCGA-DM-A0XD-01 8 133829607 133829607 C G PHF20L1 Missense_Mutation p.L466V 0.20 tolerated(0.43) benign(0.015) TCGA-DM-A0XD-01 8 21964855 21964855 G A NUDT18 Missense_Mutation p.L310F 0.27 tolerated(0.08) benign(0.273) TCGA-DM-A0XD-01 8 24262864 24262864 A T ADAMDEC1 3'UTR 0.13 TCGA-DM-A0XD-01 8 37595486 37595486 T G ERLIN2 Missense_Mutation p.C16G 0.29 tolerated(0.47) benign(0) TCGA-DM-A0XD-01 8 52321225 52321225 C T PXDNL Missense_Mutation p.A987T 0.34 tolerated(0.39) benign(0.036) TCGA-DM-A0XD-01 8 71078966 71078966 C T NCOA2 Missense_Mutation p.E189K 0.31 deleterious(0) benign(0.118) TCGA-DM-A0XD-01 8 72975758 72975758 G T TRPA1 Missense_Mutation p.P201T 0.25 deleterious(0) possibly_damaging(0.728) TCGA-DM-A0XD-01 9 105767420 105767420 G T CYLC2 Missense_Mutation p.E169D 0.33 tolerated(0.23) unknown(0) TCGA-DM-A0XD-01 9 130707716 130707716 G A FAM102A Missense_Mutation p.R283W 0.22 deleterious(0) possibly_damaging(0.895) TCGA-DM-A0XD-01 9 34835876 34835876 A G FAM205B RNA 0.40 TCGA-DM-A0XD-01 9 5077508 5077508 G C JAK2 Missense_Mutation p.K640N 0.24 deleterious(0) probably_damaging(0.967) TCGA-DM-A0XD-01 X 106224214 106224214 C A MORC4 Missense_Mutation p.M281I 0.27 tolerated(0.1) benign(0.074) TCGA-DM-A0XD-01 X 107406140 107406140 C T COL4A6 Missense_Mutation p.G1401S 0.30 probably_damaging(1) TCGA-DM-A0XD-01 X 11783735 11783735 G A MSL3 Missense_Mutation p.R353H 0.46 deleterious(0.01) probably_damaging(0.983) TCGA-DM-A0XD-01 X 134989178 134989178 T C SAGE1 Missense_Mutation p.I277T 0.57 tolerated(0.7) benign(0.225) TCGA-DM-A0XD-01 X 140786523 140786523 C T SPANXD Missense_Mutation p.V14I 0.29 tolerated(0.06) benign(0.146) TCGA-DM-A0XD-01 X 140996075 140996075 G A MAGEC1 Missense_Mutation p.G962D 0.17 deleterious(0) unknown(0) TCGA-DM-A0XD-01 X 144909009 144909009 T C TMEM257 5'UTR 0.34 TCGA-DM-A0XD-01 X 155010145 155010145 G T SPRY3 3'UTR 0.22 TCGA-DM-A0XD-01 X 2990191 2990191 G C ARSF Missense_Mutation p.G46R 0.79 deleterious(0) probably_damaging(0.996) TCGA-DM-A0XD-01 X 2990218 2990218 T A ARSF Splice_Site p.X54_splice 0.50 TCGA-DM-A0XD-01 X 49645131 49645131 C T USP27X Missense_Mutation p.T74M 0.12 deleterious(0.01) possibly_damaging(0.902) TCGA-DM-A0XD-01 X 55479616 55479616 C T MAGEH1 3'UTR 0.45 TCGA-DM-A0XD-01 X 75004086 75004086 C T MAGEE2 Silent p.L267L 0.14 TCGA-DM-A0XD-01 X 7811705 7811705 C T VCX Missense_Mutation p.P90L 0.09 deleterious(0.03) unknown(0) TCGA-DM-A0XF-01 10 117185779 117185779 T A ATRNL1 Missense_Mutation p.Y1097N 0.08 deleterious(0) possibly_damaging(0.901) TCGA-DM-A0XF-01 10 124379788 124379788 C T DMBT1 Silent p.N1626N 0.21 TCGA-DM-A0XF-01 10 50870825 50870825 C A CHAT Missense_Mutation p.S658R 0.37 deleterious(0) probably_damaging(0.999) TCGA-DM-A0XF-01 10 71718500 71718500 G C COL13A1 3'UTR 0.20 TCGA-DM-A0XF-01 10 75583813 75583813 A G CAMK2G Silent p.A363A 0.34 TCGA-DM-A0XF-01 10 97920797 97920797 G C ZNF518A RNA 0.10 TCGA-DM-A0XF-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.27 deleterious(0) probably_damaging(0.999) TCGA-DM-A0XF-01 11 125888244 125888244 G T CDON Silent p.G207G 0.18 TCGA-DM-A0XF-01 11 33373742 33373742 T A HIPK3 Silent p.P1034P 0.33 TCGA-DM-A0XF-01 11 40135806 40135807 - T LRRC4C 3'UTR 0.15 TCGA-DM-A0XF-01 11 60184407 60184407 T C MS4A14 Missense_Mutation p.F689L 0.46 tolerated(0.56) benign(0) TCGA-DM-A0XF-01 11 60561467 60561467 A G MS4A10 Missense_Mutation p.N128S 0.27 tolerated(0.09) possibly_damaging(0.474) TCGA-DM-A0XF-01 11 62289450 62289450 C T AHNAK Missense_Mutation p.V4147M 0.37 possibly_damaging(0.688) TCGA-DM-A0XF-01 11 64082509 64082509 T C ESRRA Missense_Mutation p.V260A 0.13 deleterious(0.01) possibly_damaging(0.685) TCGA-DM-A0XF-01 11 66192144 66192144 C T NPAS4 Missense_Mutation p.R595W 0.13 deleterious(0) probably_damaging(0.999) TCGA-DM-A0XF-01 11 6643720 6643720 G C DCHS1 Missense_Mutation p.R3063G 0.27 deleterious(0) possibly_damaging(0.828) TCGA-DM-A0XF-01 11 74556290 74556290 G T XRRA1 Silent p.I577I 0.13 TCGA-DM-A0XF-01 11 77815047 77815047 G A ALG8 Missense_Mutation p.S443L 0.24 tolerated(0.69) benign(0.015) TCGA-DM-A0XF-01 11 92600188 92600188 C G FAT3 Missense_Mutation p.S3980R 0.11 benign(0.384) TCGA-DM-A0XF-01 12 104712834 104712834 G A TXNRD1 Splice_Site p.X291_splice 0.36 TCGA-DM-A0XF-01 12 130647574 130647574 G T FZD10 Silent p.P29P 0.32 TCGA-DM-A0XF-01 12 271116 271116 C T IQSEC3 Missense_Mutation p.P823L 0.32 deleterious(0) probably_damaging(0.995) TCGA-DM-A0XF-01 12 32138220 32138220 T A KIAA1551 Missense_Mutation p.L1444Q 0.13 deleterious(0) possibly_damaging(0.735) TCGA-DM-A0XF-01 12 49443597 49443597 C G KMT2D Silent p.R1258R 0.17 TCGA-DM-A0XF-01 12 57398096 57398096 C T ZBTB39 Silent p.P202P 0.39 TCGA-DM-A0XF-01 12 654051 654051 C T B4GALNT3 Missense_Mutation p.R151C 0.28 deleterious(0) probably_damaging(1) TCGA-DM-A0XF-01 13 102030988 102030988 A T NALCN Missense_Mutation p.V103E 0.16 deleterious(0) possibly_damaging(0.786) TCGA-DM-A0XF-01 13 46543344 46543344 G - ZC3H13 Frame_Shift_Del p.A1112Vfs*54 0.20 TCGA-DM-A0XF-01 13 52598914 52598914 G A ALG11 Missense_Mutation p.D350N 0.20 deleterious(0) probably_damaging(1) TCGA-DM-A0XF-01 14 101490146 101490146 G A MIR299 RNA 0.48 TCGA-DM-A0XF-01 14 65252487 65252487 C G SPTB Missense_Mutation p.K1248N 0.58 deleterious(0) probably_damaging(0.997) TCGA-DM-A0XF-01 14 73965031 73965031 G A HEATR4 Nonsense_Mutation p.Q792* 0.35 TCGA-DM-A0XF-01 14 81606127 81606127 C T TSHR Missense_Mutation p.S266F 0.19 tolerated(0.28) benign(0.213) TCGA-DM-A0XF-01 15 43552700 43552700 G A TGM5 Missense_Mutation p.H30Y 0.24 deleterious(0.01) benign(0.362) TCGA-DM-A0XF-01 15 45427483 45427483 G T DUOX1 Silent p.R163R 0.16 TCGA-DM-A0XF-01 15 45427484 45427484 G T DUOX1 Missense_Mutation p.D164Y 0.20 deleterious(0.01) possibly_damaging(0.694) TCGA-DM-A0XF-01 15 91016137 91016137 G T IQGAP1 Silent p.L748L 0.28 TCGA-DM-A0XF-01 16 15155494 15155494 C T RRN3 3'UTR 0.32 TCGA-DM-A0XF-01 16 18853751 18853751 G A SMG1 Missense_Mutation p.A2082V 0.40 tolerated(0.11) probably_damaging(0.958) TCGA-DM-A0XF-01 16 19128719 19128719 C A ITPRIPL2 3'UTR 0.09 TCGA-DM-A0XF-01 16 27459811 27459811 T C IL21R Intron 0.09 TCGA-DM-A0XF-01 16 3304781 3304781 G A MEFV Missense_Mutation p.T96I 0.19 tolerated(0.73) benign(0.004) TCGA-DM-A0XF-01 16 71887863 71887863 C T ATXN1L 3'UTR 0.06 TCGA-DM-A0XF-01 16 784780 784780 G A NARFL Silent p.A177A 0.06 TCGA-DM-A0XF-01 16 88505041 88505041 C T ZNF469 Silent p.P3693P 0.73 TCGA-DM-A0XF-01 16 89357085 89357085 G A ANKRD11 Silent p.R183R 0.09 TCGA-DM-A0XF-01 16 90037863 90037863 C A CENPBD1 Missense_Mutation p.M156I 0.13 tolerated(0.56) benign(0.007) TCGA-DM-A0XF-01 17 3819437 3819437 T G P2RX1 Missense_Mutation p.K28T 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-DM-A0XF-01 17 42287756 42287756 G A UBTF Missense_Mutation p.P482L 0.09 deleterious(0) probably_damaging(1) TCGA-DM-A0XF-01 17 44952593 44952593 G C WNT9B Missense_Mutation p.R154P 0.10 tolerated(0.07) benign(0.101) TCGA-DM-A0XF-01 17 51900745 51900745 G A KIF2B Silent p.A117A 0.22 TCGA-DM-A0XF-01 17 68174596 68174596 T C KCNJ2 3'UTR 0.13 TCGA-DM-A0XF-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.37 deleterious(0) probably_damaging(0.993) TCGA-DM-A0XF-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.13 tolerated(0.11) benign(0.308) TCGA-DM-A0XF-01 18 9583190 9583190 A T PPP4R1 Nonsense_Mutation p.C281* 0.15 TCGA-DM-A0XF-01 19 10397860 10397860 G A ICAM4 Missense_Mutation p.A58T 0.09 tolerated_low_confidence(0.07) probably_damaging(0.95) TCGA-DM-A0XF-01 19 20828160 20828160 C T ZNF626 Intron 0.25 TCGA-DM-A0XF-01 19 35836571 35836571 G A CD22 Missense_Mutation p.G759S 0.28 tolerated(0.99) benign(0.005) TCGA-DM-A0XF-01 19 38229341 38229341 C T ZNF573 3'UTR 0.17 TCGA-DM-A0XF-01 19 38383489 38383489 G T WDR87 Missense_Mutation p.Q913K 0.28 possibly_damaging(0.744) TCGA-DM-A0XF-01 19 4231297 4231297 C T EBI3 Silent p.P59P 0.27 TCGA-DM-A0XF-01 19 42909704 42909704 G A LIPE Missense_Mutation p.T792M 0.13 tolerated(0.06) benign(0.16) TCGA-DM-A0XF-01 19 43237016 43237016 T C PSG3 Missense_Mutation p.Y210C 0.39 deleterious(0.01) possibly_damaging(0.838) TCGA-DM-A0XF-01 19 43269724 43269724 G T PSG8 Missense_Mutation p.L4I 0.22 tolerated(0.06) benign(0.08) TCGA-DM-A0XF-01 19 44377903 44377903 C T ZNF404 Missense_Mutation p.G155S 0.08 deleterious(0.03) benign(0.019) TCGA-DM-A0XF-01 19 4555558 4555558 C T SEMA6B Missense_Mutation p.V164I 0.15 tolerated(0.6) benign(0.006) TCGA-DM-A0XF-01 19 51918507 51918507 C T SIGLEC10 Missense_Mutation p.E420K 0.08 tolerated(0.06) possibly_damaging(0.499) TCGA-DM-A0XF-01 19 53270648 53270648 C T ZNF600 Missense_Mutation p.V121I 0.14 tolerated(0.15) benign(0.013) TCGA-DM-A0XF-01 19 57175303 57175303 C T ZNF835 Missense_Mutation p.E422K 0.17 tolerated(0.06) possibly_damaging(0.548) TCGA-DM-A0XF-01 1 144952190 144952190 A C PDE4DIP Intron 0.06 TCGA-DM-A0XF-01 1 155029547 155029547 C T ADAM15 Missense_Mutation p.A373V 0.31 tolerated(0.18) benign(0.248) TCGA-DM-A0XF-01 1 155708104 155708104 C T DAP3 3'UTR 0.27 TCGA-DM-A0XF-01 1 158368592 158368592 A G OR10T2 Missense_Mutation p.I222T 0.13 deleterious(0.02) benign(0.094) TCGA-DM-A0XF-01 1 160648876 160648876 G A CD48 Missense_Mutation p.T233M 0.31 tolerated(1) benign(0.006) TCGA-DM-A0XF-01 1 167368588 167368588 A G POU2F1 Missense_Mutation p.S479G 0.29 tolerated(0.06) unknown(0) TCGA-DM-A0XF-01 1 17552649 17552649 C T PADI1 Silent p.A216A 0.09 TCGA-DM-A0XF-01 1 179380323 179380323 A T AXDND1 Missense_Mutation p.E384D 0.11 tolerated(0.41) benign(0.042) TCGA-DM-A0XF-01 1 18962859 18962859 G T PAX7 Missense_Mutation p.D194Y 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-DM-A0XF-01 1 19027256 19027256 C T PAX7 Missense_Mutation p.T299M 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-DM-A0XF-01 1 190423855 190423855 G A BRINP3 Missense_Mutation p.R56C 0.25 deleterious(0.01) possibly_damaging(0.871) TCGA-DM-A0XF-01 1 220213564 220213564 C T EPRS Missense_Mutation p.V32I 0.10 tolerated(0.34) benign(0.006) TCGA-DM-A0XF-01 1 223177788 223177788 G A DISP1 Missense_Mutation p.A1017T 0.05 tolerated(0.06) possibly_damaging(0.461) TCGA-DM-A0XF-01 1 247920773 247920773 C T OR1C1 Silent p.Q312Q 0.23 TCGA-DM-A0XF-01 1 248402359 248402359 T G OR2M4 Missense_Mutation p.I43M 0.14 tolerated(0.14) benign(0.007) TCGA-DM-A0XF-01 1 248652038 248652038 T A OR2T5 Missense_Mutation p.I50N 0.06 deleterious(0) possibly_damaging(0.774) TCGA-DM-A0XF-01 1 27107117 27107118 - G ARID1A Frame_Shift_Ins p.V2244Gfs*34 0.24 TCGA-DM-A0XF-01 1 36379822 36379822 G A AGO1 Missense_Mutation p.A594T 0.27 deleterious(0) probably_damaging(0.999) TCGA-DM-A0XF-01 1 47583547 47583547 C T CYP4Z1 Missense_Mutation p.R487C 0.19 deleterious(0.01) benign(0.223) TCGA-DM-A0XF-01 1 47614387 47614387 G A CYP4A22 Missense_Mutation p.R493Q 0.10 tolerated(1) benign(0.086) TCGA-DM-A0XF-01 1 53746281 53746281 C T LRP8 Silent p.A158A 0.44 TCGA-DM-A0XF-01 1 78430840 78430840 C T FUBP1 Silent p.P183P 0.55 TCGA-DM-A0XF-01 1 9801287 9801287 C G CLSTN1 Missense_Mutation p.V462L 0.10 deleterious(0.02) possibly_damaging(0.762) TCGA-DM-A0XF-01 1 98144682 98144682 T G DPYD Missense_Mutation p.E273D 0.12 tolerated(0.37) benign(0) TCGA-DM-A0XF-01 20 21376969 21376969 C G NKX2-4 Silent p.S215S 0.42 TCGA-DM-A0XF-01 21 31720776 31720776 C T KRTAP23-1 Missense_Mutation p.G50E 0.09 unknown(0) TCGA-DM-A0XF-01 21 40547454 40547454 G A PSMG1 3'UTR 0.07 TCGA-DM-A0XF-01 21 45548025 45548025 G T PWP2 Missense_Mutation p.G785C 0.18 tolerated(0.11) possibly_damaging(0.563) TCGA-DM-A0XF-01 22 21796985 21796985 G A HIC2 5'UTR 0.17 TCGA-DM-A0XF-01 22 37482436 37482436 T A TMPRSS6 Missense_Mutation p.E296V 0.39 deleterious(0) possibly_damaging(0.721) TCGA-DM-A0XF-01 2 101612344 101612344 G A NPAS2 3'UTR 0.44 TCGA-DM-A0XF-01 2 101874382 101874382 C A CNOT11 Missense_Mutation p.S215Y 0.06 deleterious(0.02) benign(0.276) TCGA-DM-A0XF-01 2 172666786 172666786 C G SLC25A12 Missense_Mutation p.G391A 0.12 deleterious(0.01) benign(0.246) TCGA-DM-A0XF-01 2 179425111 179425111 G T TTN Missense_Mutation p.S28583Y 0.15 TCGA-DM-A0XF-01 2 179595263 179595263 G T TTN Missense_Mutation p.H5999Q 0.19 TCGA-DM-A0XF-01 2 207170586 207170586 C G ZDBF2 Missense_Mutation p.S445C 0.23 tolerated(0.08) probably_damaging(0.923) TCGA-DM-A0XF-01 2 219229355 219229355 A T C2orf62 Missense_Mutation p.N212I 0.24 tolerated(0.06) benign(0.04) TCGA-DM-A0XF-01 2 242794405 242794405 G A PDCD1 Silent p.G179G 0.50 TCGA-DM-A0XF-01 2 27601911 27601911 C T ZNF513 Silent p.L74L 0.20 TCGA-DM-A0XF-01 2 69002542 69002542 C T ARHGAP25 Missense_Mutation p.T84M 0.31 tolerated(0.07) benign(0.048) TCGA-DM-A0XF-01 2 71212289 71212289 G A ANKRD53 Silent p.R484R 0.20 TCGA-DM-A0XF-01 2 71351470 71351470 G A MCEE Missense_Mutation p.H82Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-DM-A0XF-01 3 100566506 100566506 T C ABI3BP Missense_Mutation p.S488G 0.13 tolerated(0.32) benign(0.153) TCGA-DM-A0XF-01 3 121415505 121415505 A T GOLGB1 Missense_Mutation p.L1289M 0.16 probably_damaging(0.952) TCGA-DM-A0XF-01 3 152881033 152881055 GAGGCGGCCACCGCGCGCCGGCC - RAP2B Missense_Mutation 0.42 TCGA-DM-A0XF-01 3 160151719 160151719 T A SMC4 3'UTR 0.10 TCGA-DM-A0XF-01 3 165547363 165547363 C A BCHE Missense_Mutation p.A487S 0.12 tolerated(0.18) benign(0.014) TCGA-DM-A0XF-01 3 195451869 195451869 G T MUC20 Missense_Mutation p.G132V 0.27 tolerated(0.17) probably_damaging(0.931) TCGA-DM-A0XF-01 3 40503141 40503141 G C RPL14 Missense_Mutation p.A115P 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-DM-A0XF-01 3 47163124 47163124 G C SETD2 Missense_Mutation p.S1001C 0.09 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-DM-A0XF-01 3 47890294 47890294 C A DHX30 Missense_Mutation p.A919E 0.34 deleterious(0.04) benign(0.155) TCGA-DM-A0XF-01 3 47894315 47894315 C A MAP4 3'UTR 0.31 TCGA-DM-A0XF-01 3 51968776 51968776 C A RRP9 Missense_Mutation p.G351C 0.19 deleterious(0) probably_damaging(0.951) TCGA-DM-A0XF-01 3 53213609 53213609 G A PRKCD Silent p.L44L 0.30 TCGA-DM-A0XF-01 3 53752754 53752754 G T CACNA1D Silent p.G508G 0.15 TCGA-DM-A0XF-01 3 62522163 62522163 C T CADPS Missense_Mutation p.R687H 0.31 deleterious(0.01) possibly_damaging(0.522) TCGA-DM-A0XF-01 3 69105962 69105962 C A UBA3 Silent p.V323V 0.05 TCGA-DM-A0XF-01 4 138452216 138452216 T G PCDH18 Missense_Mutation p.K343Q 0.14 deleterious(0.01) benign(0.064) TCGA-DM-A0XF-01 4 15638225 15638225 G C FBXL5 Missense_Mutation p.L220V 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A0XF-01 5 112174916 112174916 G T APC Nonsense_Mutation p.E1209* 0.36 TCGA-DM-A0XF-01 5 112227436 112227436 A G ZRSR1 Missense_Mutation p.K34E 0.06 deleterious(0) benign(0.292) TCGA-DM-A0XF-01 5 140530631 140530631 G C PCDHB6 Missense_Mutation p.A265P 0.19 deleterious(0) probably_damaging(0.994) TCGA-DM-A0XF-01 5 140575064 140575064 T G PCDHB10 3'UTR 0.13 TCGA-DM-A0XF-01 5 147040945 147040945 T A JAKMIP2 Nonsense_Mutation p.K65* 0.12 TCGA-DM-A0XF-01 5 175717078 175717078 C A SIMC1 Intron 0.32 TCGA-DM-A0XF-01 5 58270853 58270853 C A PDE4D Missense_Mutation p.V690F 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-DM-A0XF-01 5 79026488 79026488 G A CMYA5 Missense_Mutation p.E634K 0.10 benign(0.05) TCGA-DM-A0XF-01 5 98234452 98234452 G A CHD1 Missense_Mutation p.P368S 0.29 deleterious(0.02) benign(0.148) TCGA-DM-A0XF-01 6 100898209 100898209 C T SIM1 Silent p.V94V 0.22 TCGA-DM-A0XF-01 6 109775292 109775292 G T MICAL1 Silent p.A36A 0.18 TCGA-DM-A0XF-01 6 133777722 133777722 C A EYA4 Silent p.P102P 0.26 TCGA-DM-A0XF-01 6 152826408 152826408 G A SYNE1 Nonsense_Mutation p.R236* 0.30 TCGA-DM-A0XF-01 6 160978560 160978560 G T LPA Missense_Mutation p.Q1559K 0.14 tolerated(1) benign(0.033) TCGA-DM-A0XF-01 6 30671309 30671309 G A MDC1 Silent p.V1856V 0.27 TCGA-DM-A0XF-01 6 56480239 56480239 C T DST Intron 0.36 TCGA-DM-A0XF-01 6 72113284 72113284 C T MIR30A RNA 0.36 TCGA-DM-A0XF-01 6 74229113 74229113 C T EEF1A1 Missense_Mutation p.D91N 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.847) TCGA-DM-A0XF-01 7 107748208 107748208 C T LAMB4 Nonsense_Mutation p.W153* 0.10 TCGA-DM-A0XF-01 7 128483512 128483512 G A FLNC Missense_Mutation p.G898S 0.42 deleterious(0) probably_damaging(1) TCGA-DM-A0XF-01 7 128498547 128498547 T A FLNC Silent p.P2716P 0.18 TCGA-DM-A0XF-01 7 141755411 141755411 C A MGAM Missense_Mutation p.S1123Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-DM-A0XF-01 7 23240041 23240041 T A NUPL2 Missense_Mutation p.S317T 0.33 tolerated(0.07) probably_damaging(0.996) TCGA-DM-A0XF-01 7 24839823 24839823 C A OSBPL3 Silent p.L881L 0.09 TCGA-DM-A0XF-01 7 27203162 27203162 C T HOXA9 3'UTR 0.23 TCGA-DM-A0XF-01 7 48427431 48427431 T C ABCA13 Missense_Mutation p.L3783S 0.08 possibly_damaging(0.894) TCGA-DM-A0XF-01 7 83739848 83739848 C T SEMA3A Missense_Mutation p.A131T 0.41 tolerated(0.16) benign(0.362) TCGA-DM-A0XF-01 8 103277497 103277497 G A UBR5 Nonsense_Mutation p.R2478* 0.10 TCGA-DM-A0XF-01 8 61655059 61655059 C T CHD7 Silent p.N356N 0.10 TCGA-DM-A0XF-01 8 61774818 61774818 A C CHD7 Missense_Mutation p.N2632H 0.18 probably_damaging(0.991) TCGA-DM-A0XF-01 8 7340117 7340117 T C DEFB106B 3'UTR 0.29 TCGA-DM-A0XF-01 8 73480376 73480376 G T KCNB2 Missense_Mutation p.C136F 0.11 deleterious(0) probably_damaging(1) TCGA-DM-A0XF-01 8 86569701 86569701 C T REXO1L1P 3'UTR 0.11 TCGA-DM-A0XF-01 8 87386304 87386304 G C WWP1 Missense_Mutation p.D9H 0.49 tolerated_low_confidence(0.07) possibly_damaging(0.625) TCGA-DM-A0XF-01 9 129975275 129975275 T C RALGPS1 Missense_Mutation p.L500P 0.41 tolerated(0.07) probably_damaging(0.984) TCGA-DM-A0XF-01 X 101858350 101858350 C T ARMCX5 Silent p.H427H 0.15 TCGA-DM-A0XF-01 X 103494939 103494939 G T ESX1 Silent p.I397I 0.10 TCGA-DM-A0XF-01 X 104984651 104984651 C T IL1RAPL2 Missense_Mutation p.R339W 0.31 deleterious(0) probably_damaging(0.972) TCGA-DM-A0XF-01 X 109247083 109247083 C T TMEM164 Silent p.P27P 0.10 TCGA-DM-A0XF-01 X 117960041 117960041 C T ZCCHC12 Silent p.I278I 0.17 TCGA-DM-A0XF-01 X 119573098 119573098 C A LAMP2 Intron 0.30 TCGA-DM-A0XF-01 X 140995607 140995607 C T MAGEC1 Missense_Mutation p.A806V 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.483) TCGA-DM-A0XF-01 X 152616771 152616771 G T ZNF275 3'UTR 0.07 TCGA-DM-A0XF-01 X 21674707 21674707 C T KLHL34 Silent p.P400P 0.27 TCGA-DM-A0XF-01 X 30236765 30236765 G T MAGEB2 Missense_Mutation p.R23L 0.29 deleterious(0.03) benign(0.058) TCGA-DM-A0XF-01 X 53565890 53565890 A C HUWE1 Silent p.P3928P 0.11 TCGA-DM-A0XF-01 X 54014375 54014375 G A PHF8 Missense_Mutation p.T614M 0.28 tolerated(0.27) benign(0.302) TCGA-DM-A0XF-01 X 69640083 69640083 G - KIF4A Frame_Shift_Del p.G1223Afs*37 0.18 TCGA-DM-A0XF-01 X 75397516 75397516 T C PBDC1 Missense_Mutation p.Y159H 0.08 tolerated(0.1) benign(0.2) TCGA-DM-A0XF-01 X 83116157 83116157 A G CYLC1 5'UTR 0.05 TCGA-DM-A0XF-01 X 8759198 8759198 C G FAM9A 3'UTR 0.12 TCGA-DM-A1D0-01 10 105193704 105193704 G A PDCD11 Splice_Site p.X1159_splice 0.67 TCGA-DM-A1D0-01 10 112655705 112655705 G C PDCD4 Splice_Site p.X404_splice 0.40 TCGA-DM-A1D0-01 10 118435939 118435939 G A HSPA12A Missense_Mutation p.P454L 0.58 deleterious(0) probably_damaging(0.961) TCGA-DM-A1D0-01 10 135142374 135142374 C T CALY Silent p.P40P 0.42 TCGA-DM-A1D0-01 11 121461819 121461819 C T SORL1 Silent p.Y1441Y 0.73 TCGA-DM-A1D0-01 11 133788966 133788966 T C IGSF9B Intron 0.83 TCGA-DM-A1D0-01 11 252690 252691 - A PSMD13 3'UTR 0.31 TCGA-DM-A1D0-01 11 47447888 47447888 A C PSMC3 5'UTR 0.31 TCGA-DM-A1D0-01 11 5291031 5291031 G T HBE1 Silent p.G30G 0.33 TCGA-DM-A1D0-01 11 55761859 55761859 C G OR5F1 Missense_Mutation p.M81I 0.20 deleterious(0.01) benign(0.211) TCGA-DM-A1D0-01 11 57464280 57464280 A G ZDHHC5 Missense_Mutation p.K353E 0.41 deleterious(0.01) possibly_damaging(0.576) TCGA-DM-A1D0-01 11 65486284 65486284 C G RNASEH2C 3'UTR 0.19 TCGA-DM-A1D0-01 11 71507083 71507083 G A FAM86C1 Silent p.K94K 0.27 TCGA-DM-A1D0-01 12 104142892 104142892 C T STAB2 Silent p.N2132N 0.22 TCGA-DM-A1D0-01 12 130926673 130926673 C T RIMBP2 Silent p.V391V 0.44 TCGA-DM-A1D0-01 12 24048776 24048776 G A SOX5 Missense_Mutation p.T74M 0.43 tolerated_low_confidence(0.14) benign(0.007) TCGA-DM-A1D0-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.43 deleterious(0) possibly_damaging(0.479) TCGA-DM-A1D0-01 12 32135139 32135139 A G KIAA1551 Missense_Mutation p.N417S 0.34 tolerated(0.06) benign(0.159) TCGA-DM-A1D0-01 12 7177215 7177215 G A C1S Missense_Mutation p.D443N 0.38 tolerated(0.55) benign(0.004) TCGA-DM-A1D0-01 12 85255555 85255555 G A SLC6A15 Silent p.S683S 0.38 TCGA-DM-A1D0-01 12 98927129 98927129 G T TMPO Missense_Mutation p.S365I 0.44 deleterious_low_confidence(0) benign(0.062) TCGA-DM-A1D0-01 13 101320883 101320883 A T TMTC4 Missense_Mutation p.Y57N 0.76 deleterious(0.03) possibly_damaging(0.458) TCGA-DM-A1D0-01 13 108861826 108861826 G A LIG4 Silent p.D597D 0.20 TCGA-DM-A1D0-01 13 114288329 114288329 A T TFDP1 Missense_Mutation p.Q200L 0.13 deleterious(0) benign(0.397) TCGA-DM-A1D0-01 13 19997035 19997035 A C TPTE2 3'UTR 0.53 TCGA-DM-A1D0-01 13 20411863 20411863 T C ZMYM5 Missense_Mutation p.N324S 0.58 deleterious(0.04) benign(0.005) TCGA-DM-A1D0-01 13 28367932 28367932 C T GSX1 Silent p.G214G 0.24 TCGA-DM-A1D0-01 13 36424566 36424566 G T DCLK1 Intron 0.71 TCGA-DM-A1D0-01 13 36424567 36424567 G C DCLK1 Intron 0.71 TCGA-DM-A1D0-01 13 38225426 38225426 C A TRPC4 Missense_Mutation p.K685N 0.18 tolerated(0.05) benign(0.096) TCGA-DM-A1D0-01 14 105181131 105181147 GGGGCCGGGCCTCAAAG - INF2 Frame_Shift_Del p.G1212Dfs*19 0.92 TCGA-DM-A1D0-01 14 57704081 57704081 A G EXOC5 Silent p.F178F 0.30 TCGA-DM-A1D0-01 14 67814164 67814164 G T ATP6V1D Missense_Mutation p.T105N 0.85 tolerated(0.32) benign(0.008) TCGA-DM-A1D0-01 14 86088696 86088696 C T FLRT2 Missense_Mutation p.R280W 0.84 deleterious(0) possibly_damaging(0.658) TCGA-DM-A1D0-01 16 1616163 1616163 T C IFT140 Missense_Mutation p.K634E 0.07 tolerated(0.46) benign(0.003) TCGA-DM-A1D0-01 17 27068541 27068541 G A NEK8 Missense_Mutation p.V668M 0.25 deleterious(0) probably_damaging(0.991) TCGA-DM-A1D0-01 17 28651915 28651915 T A TMIGD1 Nonsense_Mutation p.K187* 0.27 TCGA-DM-A1D0-01 17 38146409 38146409 C T PSMD3 Missense_Mutation p.R314C 0.10 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D0-01 17 38950189 38950189 C G KRT28 Missense_Mutation p.R363T 0.20 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D0-01 17 41166248 41166248 G T IFI35 Missense_Mutation p.V267L 0.34 deleterious(0) possibly_damaging(0.54) TCGA-DM-A1D0-01 17 43182282 43182282 A T NMT1 Missense_Mutation p.E463V 0.35 tolerated(0.07) benign(0.152) TCGA-DM-A1D0-01 17 56283327 56283327 G A MKS1 3'UTR 0.56 TCGA-DM-A1D0-01 17 66422232 66422232 T C WIPI1 Missense_Mutation p.E426G 0.08 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D0-01 17 7577017 7577017 A C TP53 Splice_Site p.X307_splice 0.77 TCGA-DM-A1D0-01 17 8395621 8395621 T C MYH10 Silent p.G1555G 0.81 TCGA-DM-A1D0-01 18 22805072 22805072 C T ZNF521 Missense_Mutation p.R937Q 0.72 tolerated(0.22) probably_damaging(0.922) TCGA-DM-A1D0-01 19 12501191 12501191 G A ZNF799 3'UTR 0.45 TCGA-DM-A1D0-01 19 22154125 22154125 G C ZNF208 Missense_Mutation p.F1237L 0.46 tolerated(0.67) benign(0.008) TCGA-DM-A1D0-01 19 31768382 31768382 T C TSHZ3 Missense_Mutation p.K773E 0.29 tolerated(0.35) benign(0.16) TCGA-DM-A1D0-01 19 38964116 38964116 C T RYR1 Missense_Mutation p.R1289W 0.29 probably_damaging(0.999) TCGA-DM-A1D0-01 19 41825509 41825509 G A CCDC97 Missense_Mutation p.R178Q 0.33 tolerated(0.07) probably_damaging(0.996) TCGA-DM-A1D0-01 19 48049179 48049179 A T ZNF541 Missense_Mutation p.C203S 0.11 deleterious(0) probably_damaging(0.955) TCGA-DM-A1D0-01 19 54782800 54782800 A T LILRB2 Silent p.A274A 0.04 TCGA-DM-A1D0-01 19 885944 885944 G C MED16 Missense_Mutation p.S235R 0.46 tolerated(0.47) possibly_damaging(0.765) TCGA-DM-A1D0-01 19 9069143 9069143 G T MUC16 Silent p.S6101S 0.12 TCGA-DM-A1D0-01 1 117146509 117146509 T C IGSF3 Missense_Mutation p.Q474R 0.08 tolerated(0.22) benign(0.008) TCGA-DM-A1D0-01 1 118530785 118530785 G A SPAG17 Missense_Mutation p.T1855M 0.50 deleterious(0.03) benign(0.219) TCGA-DM-A1D0-01 1 152282263 152282263 C G FLG Missense_Mutation p.R1700T 0.41 possibly_damaging(0.537) TCGA-DM-A1D0-01 1 154698430 154698430 C T KCNN3 Missense_Mutation p.V555I 0.34 deleterious(0.01) benign(0.128) TCGA-DM-A1D0-01 1 15789901 15789901 A C CELA2A Missense_Mutation p.K126T 0.33 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D0-01 1 158913599 158913599 C T PYHIN1 Missense_Mutation p.T341M 0.35 deleterious(0.02) possibly_damaging(0.743) TCGA-DM-A1D0-01 1 162729634 162729634 C T DDR2 Silent p.D240D 0.46 TCGA-DM-A1D0-01 1 171300867 171300867 T C FMO4 Silent p.G191G 0.44 TCGA-DM-A1D0-01 1 175067721 175067721 G T TNN Missense_Mutation p.K703N 0.39 tolerated(0.05) benign(0.347) TCGA-DM-A1D0-01 1 183909864 183909864 C A COLGALT2 Silent p.V485V 0.43 TCGA-DM-A1D0-01 1 21049263 21049263 G A SH2D5 Missense_Mutation p.R352C 0.39 deleterious(0) possibly_damaging(0.768) TCGA-DM-A1D0-01 1 224345355 224345355 C T FBXO28 Silent p.S338S 0.44 TCGA-DM-A1D0-01 1 2268237 2268237 G A MORN1 Silent p.G363G 0.43 TCGA-DM-A1D0-01 1 241803364 241803364 G A OPN3 Missense_Mutation p.L65F 0.40 tolerated(0.05) benign(0.028) TCGA-DM-A1D0-01 1 45091980 45091980 G C RNF220 Missense_Mutation p.L272F 0.09 tolerated(0.23) benign(0.07) TCGA-DM-A1D0-01 1 77093236 77093236 C A ST6GALNAC3 Silent p.T241T 0.31 TCGA-DM-A1D0-01 21 47910567 47910567 C T DIP2A Missense_Mutation p.T73M 0.49 tolerated(0.08) benign(0.012) TCGA-DM-A1D0-01 22 16287373 16287373 G A POTEH Silent p.H171H 0.08 TCGA-DM-A1D0-01 22 21988567 21988567 A G CCDC116 Missense_Mutation p.E110G 0.09 deleterious(0) probably_damaging(0.957) TCGA-DM-A1D0-01 22 30780452 30780452 C A RNF215 Missense_Mutation p.G207V 0.69 tolerated(0.08) probably_damaging(0.911) TCGA-DM-A1D0-01 2 10050867 10050867 G T TAF1B Nonsense_Mutation p.E320* 0.45 TCGA-DM-A1D0-01 2 107049594 107049594 T G RGPD3 Missense_Mutation p.K785Q 0.06 deleterious(0.02) benign(0.011) TCGA-DM-A1D0-01 2 139429072 139429072 G A NXPH2 Missense_Mutation p.A72V 0.29 tolerated(0.11) benign(0.021) TCGA-DM-A1D0-01 2 141245249 141245249 G A LRP1B Silent p.I3060I 0.30 TCGA-DM-A1D0-01 2 157182191 157182191 G C NR4A2 3'UTR 0.44 TCGA-DM-A1D0-01 2 163693056 163693056 G C KCNH7 Missense_Mutation p.H100D 0.37 deleterious(0.02) benign(0.012) TCGA-DM-A1D0-01 2 167301467 167301467 C T SCN7A Silent p.K477K 0.43 TCGA-DM-A1D0-01 2 171916445 171916445 C T TLK1 Intron 0.35 TCGA-DM-A1D0-01 2 218682763 218682763 G C TNS1 Missense_Mutation p.S1327C 0.38 deleterious(0.03) benign(0.027) TCGA-DM-A1D0-01 2 219529490 219529490 C T RNF25 Missense_Mutation p.R258Q 0.42 deleterious(0.01) benign(0.046) TCGA-DM-A1D0-01 2 29259465 29259465 C T FAM179A Missense_Mutation p.A826V 0.43 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D0-01 2 73677285 73677285 A G ALMS1 Missense_Mutation p.I1210V 0.38 benign(0.051) TCGA-DM-A1D0-01 2 8871119 8871119 C T KIDINS220 Missense_Mutation p.V1683M 0.13 tolerated_low_confidence(0.05) benign(0.029) TCGA-DM-A1D0-01 3 101370080 101370080 T G ZBTB11 Missense_Mutation p.K1031T 0.43 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-DM-A1D0-01 3 113655197 113655197 G A GRAMD1C Missense_Mutation p.R514Q 0.42 deleterious(0) probably_damaging(0.97) TCGA-DM-A1D0-01 3 130107951 130107951 T A COL6A5 Missense_Mutation p.L797H 0.47 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D0-01 3 169557756 169557756 C A LRRC31 3'UTR 0.31 TCGA-DM-A1D0-01 3 52265150 52265150 A T TWF2 Missense_Mutation p.I159N 0.33 tolerated(0.28) benign(0.172) TCGA-DM-A1D0-01 3 89390185 89390185 C T EPHA3 Missense_Mutation p.R312W 0.47 deleterious(0) probably_damaging(0.927) TCGA-DM-A1D0-01 4 100869631 100869631 C T H2AFZ Silent p.Q125Q 0.11 TCGA-DM-A1D0-01 4 113554344 113554344 A C C4orf21 5'UTR 0.33 TCGA-DM-A1D0-01 4 187627978 187627978 T A FAT1 Missense_Mutation p.R1002W 0.37 possibly_damaging(0.823) TCGA-DM-A1D0-01 4 2240505 2240505 T C HAUS3 Missense_Mutation p.E392G 0.12 deleterious(0) probably_damaging(0.983) TCGA-DM-A1D0-01 4 47898537 47898537 A G NFXL1 Intron 0.29 TCGA-DM-A1D0-01 4 649789 649789 C T PDE6B Silent p.S351S 0.43 TCGA-DM-A1D0-01 4 68812237 68812237 C T TMPRSS11A Missense_Mutation p.V22I 0.43 deleterious(0.04) benign(0.018) TCGA-DM-A1D0-01 4 80327936 80327936 G T GK2 Missense_Mutation p.S473R 0.42 tolerated(0.09) possibly_damaging(0.558) TCGA-DM-A1D0-01 5 112175513 112175513 G T APC Nonsense_Mutation p.E1408* 0.86 TCGA-DM-A1D0-01 5 112917165 112917165 C G YTHDC2 Missense_Mutation p.R1136G 0.34 deleterious(0) possibly_damaging(0.696) TCGA-DM-A1D0-01 5 13883155 13883155 C T DNAH5 Missense_Mutation p.R1011Q 0.30 benign(0.238) TCGA-DM-A1D0-01 5 140242329 140242329 C T AC005609.1 3'UTR 0.52 TCGA-DM-A1D0-01 5 1403077 1403077 G T SLC6A3 Missense_Mutation p.A576E 0.29 deleterious(0.01) probably_damaging(0.915) TCGA-DM-A1D0-01 5 140744112 140744112 C T PCDHGA5 Missense_Mutation p.T72M 0.43 tolerated_low_confidence(0.06) benign(0.378) TCGA-DM-A1D0-01 5 140772923 140772923 C T PCDHGA8 Silent p.D181D 0.41 TCGA-DM-A1D0-01 5 150726983 150726983 G A SLC36A2 Silent p.A13A 0.24 TCGA-DM-A1D0-01 5 180661369 180661381 GGGGCTGGGCGGT - TRIM41 Frame_Shift_Del p.G497Vfs*70 0.47 TCGA-DM-A1D0-01 5 41382178 41382178 C T PLCXD3 Missense_Mutation p.D188N 0.36 tolerated(0.19) benign(0.001) TCGA-DM-A1D0-01 6 117869500 117869500 C G DCBLD1 Intron 0.11 TCGA-DM-A1D0-01 6 132910499 132910499 C T TAAR5 Silent p.L109L 0.43 TCGA-DM-A1D0-01 6 153345469 153345469 C A RGS17 Missense_Mutation p.Q124H 0.42 tolerated(0.09) benign(0.008) TCGA-DM-A1D0-01 6 16326658 16326658 C G ATXN1 Silent p.V628V 0.43 TCGA-DM-A1D0-01 6 17764301 17764301 C T KIF13A 3'UTR 0.44 TCGA-DM-A1D0-01 6 27368676 27368676 G A ZNF391 Missense_Mutation p.R176Q 0.45 tolerated(1) benign(0.017) TCGA-DM-A1D0-01 6 30629569 30629569 A G DHX16 Intron 0.39 TCGA-DM-A1D0-01 6 39824228 39824228 C T DAAM2 Silent p.I50I 0.43 TCGA-DM-A1D0-01 6 40359913 40359913 C T LRFN2 Silent p.P713P 0.47 TCGA-DM-A1D0-01 6 82935240 82935240 T A IBTK Missense_Mutation p.Q260L 0.11 deleterious(0) probably_damaging(0.923) TCGA-DM-A1D0-01 7 106509011 106509011 C T PIK3CG Silent p.Y335Y 0.85 TCGA-DM-A1D0-01 7 149425685 149425685 C T KRBA1 Missense_Mutation p.R516W 0.79 deleterious(0.01) benign(0) TCGA-DM-A1D0-01 7 37264491 37264491 G - ELMO1 Frame_Shift_Del p.L232Cfs*15 0.32 TCGA-DM-A1D0-01 7 42974676 42974676 C T MRPL32 Missense_Mutation p.R85C 0.07 deleterious(0.01) possibly_damaging(0.545) TCGA-DM-A1D0-01 7 75048084 75048084 T G POM121C Missense_Mutation p.K987Q 0.35 deleterious(0) probably_damaging(0.991) TCGA-DM-A1D0-01 7 88963672 88963672 C T ZNF804B Missense_Mutation p.T459M 0.79 tolerated(0.05) probably_damaging(0.943) TCGA-DM-A1D0-01 8 142222398 142222398 C T SLC45A4 Silent p.P682P 0.36 TCGA-DM-A1D0-01 8 142451278 142451278 G A CTD-3064M3.7 3'Flank 0.26 TCGA-DM-A1D0-01 8 36768520 36768520 C T KCNU1 Missense_Mutation p.P802S 0.80 tolerated(0.92) benign(0.004) TCGA-DM-A1D0-01 8 41554191 41554191 C T ANK1 Intron 0.34 TCGA-DM-A1D0-01 8 72969190 72969190 G T TRPA1 Missense_Mutation p.P386T 0.27 deleterious(0.01) benign(0.21) TCGA-DM-A1D0-01 8 86572556 86572556 T A REXO1L1P 3'UTR 0.07 TCGA-DM-A1D0-01 8 99441881 99441881 G A KCNS2 3'UTR 0.07 TCGA-DM-A1D0-01 9 104356583 104356583 A C PPP3R2 3'UTR 0.45 TCGA-DM-A1D0-01 9 107582315 107582315 C T ABCA1 Missense_Mutation p.R999H 0.33 deleterious(0.03) possibly_damaging(0.844) TCGA-DM-A1D0-01 9 113341716 113341716 G C SVEP1 Silent p.P36P 0.31 TCGA-DM-A1D0-01 9 117825245 117825245 G A TNC Silent p.G1328G 0.39 TCGA-DM-A1D0-01 9 32787031 32787031 C T TMEM215 3'UTR 0.44 TCGA-DM-A1D0-01 9 34371187 34371187 C T KIAA1161 Silent p.P551P 0.47 TCGA-DM-A1D0-01 9 35377495 35377495 C G UNC13B Missense_Mutation p.A540G 0.48 deleterious(0.03) probably_damaging(0.997) TCGA-DM-A1D0-01 9 77257523 77257523 C T RORB Silent p.N143N 0.13 TCGA-DM-A1D0-01 9 88655712 88655713 TT ATA GOLM1 Frame_Shift_Ins p.K180Yfs*4 0.14 TCGA-DM-A1D0-01 9 94487101 94487101 C T ROR2 Missense_Mutation p.G559S 0.51 tolerated(0.1) possibly_damaging(0.677) TCGA-DM-A1D0-01 X 102979142 102979142 C G GLRA4 Missense_Mutation p.D120H 0.09 tolerated(0.09) probably_damaging(1) TCGA-DM-A1D0-01 X 105450122 105450122 G C MUM1L1 Missense_Mutation p.D233H 0.43 tolerated(0.22) possibly_damaging(0.8) TCGA-DM-A1D0-01 X 108868203 108868203 A T KCNE1L Missense_Mutation p.L16Q 0.48 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D0-01 X 109445700 109445700 T C AMMECR1 Missense_Mutation p.Y255C 0.27 deleterious(0) probably_damaging(0.992) TCGA-DM-A1D0-01 X 114400494 114400494 T A LRCH2 Missense_Mutation p.S370C 0.44 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D0-01 X 114863571 114863571 A C PLS3 Missense_Mutation p.K100T 0.39 tolerated(0.05) possibly_damaging(0.493) TCGA-DM-A1D0-01 X 118603920 118603925 TGCCCG - SLC25A5 In_Frame_Del p.A137_R138del 0.37 TCGA-DM-A1D0-01 X 134167208 134167208 C A FAM127A 3'UTR 0.36 TCGA-DM-A1D0-01 X 146341226 146341226 G A MIR509-3 RNA 0.21 TCGA-DM-A1D0-01 X 151896655 151896655 C A MAGEA12 3'Flank 0.38 TCGA-DM-A1D0-01 X 154001443 154001443 C T DKC1 Silent p.C358C 0.38 TCGA-DM-A1D0-01 X 16168482 16168482 G A GRPR Silent p.K156K 0.05 TCGA-DM-A1D0-01 X 19362092 19362092 G T PDHA1 5'UTR 0.57 TCGA-DM-A1D0-01 X 76855019 76855019 T A ATRX Missense_Mutation p.K1939N 0.08 possibly_damaging(0.824) TCGA-DM-A1D0-01 X 91133206 91133206 G A PCDH11X Missense_Mutation p.S656N 0.39 tolerated(0.06) benign(0.102) TCGA-DM-A1D4-01 10 102746664 102746664 T C MRPL43 Missense_Mutation p.K103E 0.13 tolerated(0.18) possibly_damaging(0.899) TCGA-DM-A1D4-01 10 105215358 105215358 C T CALHM1 Silent p.T234T 0.38 TCGA-DM-A1D4-01 10 119043135 119043135 C G PDZD8 Missense_Mutation p.E1037Q 0.54 deleterious(0.01) possibly_damaging(0.703) TCGA-DM-A1D4-01 10 134682858 134682858 G A TTC40 Silent p.S1510S 0.48 TCGA-DM-A1D4-01 10 50732496 50732496 C T ERCC6-PGBD3 Missense_Mutation p.R327H 0.41 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DM-A1D4-01 10 55839134 55839134 C T PCDH15 Missense_Mutation p.R683H 0.31 tolerated(0.12) benign(0.108) TCGA-DM-A1D4-01 10 60937257 60937257 C T PHYHIPL Intron 0.40 TCGA-DM-A1D4-01 10 98188397 98188397 C A TLL2 Missense_Mutation p.R210I 0.45 deleterious(0.02) benign(0.151) TCGA-DM-A1D4-01 11 10647906 10647906 G C MRVI1 Silent p.P325P 0.38 TCGA-DM-A1D4-01 11 113815379 113815379 A T HTR3B Missense_Mutation p.Q331L 0.42 tolerated(0.24) benign(0.026) TCGA-DM-A1D4-01 11 118343316 118343316 G A KMT2A Missense_Mutation p.S481N 0.37 probably_damaging(0.914) TCGA-DM-A1D4-01 11 118944626 118944626 G A VPS11 Silent p.K400K 0.38 TCGA-DM-A1D4-01 11 126081469 126081469 C T RPUSD4 Missense_Mutation p.S22N 0.41 tolerated_low_confidence(0.28) benign(0.003) TCGA-DM-A1D4-01 11 45937807 45937807 G A PEX16 Missense_Mutation p.R66W 0.41 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D4-01 11 78387205 78387205 G A TENM4 Missense_Mutation p.R1830W 0.43 deleterious(0) probably_damaging(0.918) TCGA-DM-A1D4-01 11 92532114 92532114 G A FAT3 Missense_Mutation p.G1979S 0.31 probably_damaging(0.984) TCGA-DM-A1D4-01 12 100200223 100200223 C T ANKS1B Missense_Mutation p.V210M 0.47 deleterious(0) possibly_damaging(0.746) TCGA-DM-A1D4-01 12 105150996 105150996 C T CHST11 Silent p.S158S 0.53 TCGA-DM-A1D4-01 12 132512589 132512589 C A EP400 Missense_Mutation p.R1713S 0.40 unknown(0) TCGA-DM-A1D4-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.39 deleterious(0.04) probably_damaging(0.993) TCGA-DM-A1D4-01 12 48258923 48258923 A G VDR Missense_Mutation p.F112L 0.11 tolerated(0.07) probably_damaging(0.937) TCGA-DM-A1D4-01 12 56667025 56667025 G A CS Missense_Mutation p.T415M 0.32 deleterious(0.02) benign(0.124) TCGA-DM-A1D4-01 12 5841761 5841761 T G ANO2 Silent p.R490R 0.38 TCGA-DM-A1D4-01 12 82070593 82070593 C A PPFIA2 Missense_Mutation p.G94C 0.39 deleterious_low_confidence(0.01) benign(0.28) TCGA-DM-A1D4-01 13 115091245 115091245 C T CHAMP1 Missense_Mutation p.A643V 0.21 tolerated(0.09) benign(0.003) TCGA-DM-A1D4-01 13 27333900 27333900 G A GPR12 Missense_Mutation p.A22V 0.55 tolerated(0.23) benign(0) TCGA-DM-A1D4-01 13 28537271 28537271 T C CDX2 Missense_Mutation p.N308S 0.09 tolerated_low_confidence(0.33) unknown(0) TCGA-DM-A1D4-01 13 37583365 37583365 C T EXOSC8 Nonsense_Mutation p.R254* 0.50 TCGA-DM-A1D4-01 13 43934061 43934061 C T ENOX1 Missense_Mutation p.R172Q 0.57 deleterious(0.02) probably_damaging(0.984) TCGA-DM-A1D4-01 13 84455070 84455070 C T SLITRK1 Silent p.T191T 0.21 TCGA-DM-A1D4-01 14 103394821 103394821 A G AMN Missense_Mutation p.D89G 0.10 tolerated(0.19) benign(0.001) TCGA-DM-A1D4-01 14 104124098 104124098 C T KLC1 Silent p.D159D 0.33 TCGA-DM-A1D4-01 14 105930431 105930431 C T MTA1 Missense_Mutation p.T380M 0.41 deleterious(0) benign(0.444) TCGA-DM-A1D4-01 14 106667652 106667652 C T IGHV3-20 Missense_Mutation p.A94T 0.35 deleterious_low_confidence(0.05) benign(0.078) TCGA-DM-A1D4-01 14 23745677 23745677 C T HOMEZ Missense_Mutation p.V254I 0.43 tolerated_low_confidence(0.39) benign(0.005) TCGA-DM-A1D4-01 14 42356889 42356889 C A LRFN5 Missense_Mutation p.A354D 0.27 tolerated(0.27) benign(0.063) TCGA-DM-A1D4-01 14 51378721 51378721 G A PYGL Missense_Mutation p.P601L 0.40 deleterious(0) probably_damaging(1) TCGA-DM-A1D4-01 14 91338630 91338630 G A RPS6KA5 Nonsense_Mutation p.Q733* 0.31 TCGA-DM-A1D4-01 14 94088187 94088187 G A UNC79 Silent p.A1359A 0.36 TCGA-DM-A1D4-01 15 42137072 42137072 C A PLA2G4B Missense_Mutation p.P579Q 0.53 deleterious(0) probably_damaging(0.962) TCGA-DM-A1D4-01 15 50595177 50595177 T C GABPB1 Silent p.A140A 0.09 TCGA-DM-A1D4-01 15 87531267 87531267 T A AGBL1 Missense_Mutation p.F1045I 0.34 tolerated_low_confidence(0.1) unknown(0) TCGA-DM-A1D4-01 15 93015471 93015471 C A C15orf32 Missense_Mutation p.N31K 0.26 deleterious_low_confidence(0.02) benign(0.029) TCGA-DM-A1D4-01 15 93588401 93588401 C T RGMA Missense_Mutation p.A402T 0.33 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D4-01 16 19083280 19083280 G A COQ7 Missense_Mutation p.R35H 0.36 tolerated(0.54) benign(0.003) TCGA-DM-A1D4-01 16 21716598 21716598 G A OTOA Silent p.Q363Q 0.40 TCGA-DM-A1D4-01 16 24895412 24895412 G A SLC5A11 Silent p.T208T 0.32 TCGA-DM-A1D4-01 16 31088270 31088270 A G ZNF646 Missense_Mutation p.N209D 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-DM-A1D4-01 16 84270673 84270673 G A KCNG4 Missense_Mutation p.A140V 0.46 tolerated(0.15) benign(0.041) TCGA-DM-A1D4-01 16 88499952 88499952 C T ZNF469 Missense_Mutation p.A1997V 0.34 benign(0.001) TCGA-DM-A1D4-01 16 89977671 89977671 C A TCF25 3'UTR 0.54 TCGA-DM-A1D4-01 16 9857360 9857360 A C GRIN2A Silent p.G1347G 0.43 TCGA-DM-A1D4-01 17 26912631 26912631 T C SPAG5 Missense_Mutation p.Q594R 0.09 tolerated(0.12) probably_damaging(0.997) TCGA-DM-A1D4-01 17 39296699 39296699 C A KRTAP4-6 Missense_Mutation p.G14V 0.39 tolerated(0.05) unknown(0) TCGA-DM-A1D4-01 17 39502881 39502881 G A KRT33A Missense_Mutation p.R306C 0.32 deleterious(0.03) benign(0.248) TCGA-DM-A1D4-01 17 40744158 40744158 G A FAM134C Missense_Mutation p.R88C 0.36 deleterious(0) probably_damaging(0.911) TCGA-DM-A1D4-01 17 41180096 41180096 G T RND2 Nonsense_Mutation p.E107* 0.46 TCGA-DM-A1D4-01 17 44060772 44060772 C T MAPT Missense_Mutation p.P201L 0.28 tolerated(0.16) benign(0.004) TCGA-DM-A1D4-01 17 47013604 47013604 C G SNF8 Missense_Mutation p.G117A 0.34 deleterious(0) possibly_damaging(0.57) TCGA-DM-A1D4-01 17 4996261 4996261 C T ZFP3 Missense_Mutation p.R488W 0.79 deleterious(0) benign(0.031) TCGA-DM-A1D4-01 17 5322836 5322836 C T NUP88 Silent p.S45S 0.88 TCGA-DM-A1D4-01 17 65147270 65147270 C A HELZ Missense_Mutation p.A750S 0.49 tolerated(0.27) benign(0.18) TCGA-DM-A1D4-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.66 deleterious(0) probably_damaging(1) TCGA-DM-A1D4-01 17 76851792 76851792 G A TIMP2 Missense_Mutation p.A207V 0.32 tolerated(0.61) benign(0) TCGA-DM-A1D4-01 18 18531181 18531181 C A ROCK1 3'UTR 0.33 TCGA-DM-A1D4-01 18 24496112 24496112 G T CHST9 3'UTR 0.81 TCGA-DM-A1D4-01 18 25572675 25572675 G A CDH2 Missense_Mutation p.R430W 0.50 deleterious(0.02) probably_damaging(0.984) TCGA-DM-A1D4-01 18 33689576 33689576 C T SLC39A6 Missense_Mutation p.V750M 0.49 deleterious(0.03) possibly_damaging(0.714) TCGA-DM-A1D4-01 18 42643522 42643522 C A SETBP1 Silent p.G1550G 0.55 TCGA-DM-A1D4-01 18 43459104 43459104 C A EPG5 Missense_Mutation p.G1915C 0.69 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D4-01 18 48581148 48581149 - AG SMAD4 Intron p.A152Efs*6 0.40 TCGA-DM-A1D4-01 18 57107031 57107031 C T CCBE1 Missense_Mutation p.G265R 0.58 deleterious(0) probably_damaging(1) TCGA-DM-A1D4-01 18 6966283 6966283 C A LAMA1 Missense_Mutation p.D2305Y 0.54 deleterious(0) probably_damaging(0.954) TCGA-DM-A1D4-01 18 6986226 6986226 C T LAMA1 Silent p.A1763A 0.69 TCGA-DM-A1D4-01 18 77894322 77894322 G T ADNP2 Missense_Mutation p.Q342H 0.47 deleterious(0.04) possibly_damaging(0.904) TCGA-DM-A1D4-01 18 909595 909595 C A ADCYAP1 Missense_Mutation p.Q164K 0.30 tolerated(0.09) benign(0.213) TCGA-DM-A1D4-01 19 15852362 15852362 C T OR10H3 Missense_Mutation p.R54C 0.39 tolerated(0.06) benign(0.012) TCGA-DM-A1D4-01 19 17305560 17305560 G A MYO9B Silent p.R1108R 0.31 TCGA-DM-A1D4-01 19 17654209 17654209 G A FAM129C Silent p.Q502Q 0.34 TCGA-DM-A1D4-01 19 36339609 36339609 C A NPHS1 Missense_Mutation p.R367L 0.23 tolerated(0.09) possibly_damaging(0.9) TCGA-DM-A1D4-01 19 38948197 38948197 G T RYR1 Missense_Mutation p.D618Y 0.41 probably_damaging(0.926) TCGA-DM-A1D4-01 19 39075660 39075660 C T RYR1 Silent p.D4908D 0.42 TCGA-DM-A1D4-01 19 39979213 39979213 C T TIMM50 Silent p.T399T 0.11 TCGA-DM-A1D4-01 19 42546853 42546853 G A GRIK5 Missense_Mutation p.R442C 0.55 deleterious(0) possibly_damaging(0.889) TCGA-DM-A1D4-01 19 43414782 43414782 C T PSG6 Missense_Mutation p.R219Q 0.51 tolerated(1) benign(0.023) TCGA-DM-A1D4-01 19 50251701 50251701 C T TSKS Missense_Mutation p.R142H 0.36 tolerated(0.13) benign(0.033) TCGA-DM-A1D4-01 19 50780070 50780070 G A MYH14 Missense_Mutation p.R1246H 0.29 tolerated(0.06) possibly_damaging(0.872) TCGA-DM-A1D4-01 19 52496734 52496734 C A ZNF615 Missense_Mutation p.R543L 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A1D4-01 19 52955234 52955234 T A ZNF578 5'Flank 0.30 TCGA-DM-A1D4-01 19 53994334 53994334 C T ZNF813 Missense_Mutation p.T283M 0.35 tolerated(0.23) benign(0.011) TCGA-DM-A1D4-01 19 56538760 56538760 G A NLRP5 Silent p.P387P 0.41 TCGA-DM-A1D4-01 19 5737148 5737148 G T CATSPERD Splice_Site p.X131_splice 0.34 TCGA-DM-A1D4-01 19 57984884 57984884 C T ZNF772 Missense_Mutation p.A410T 0.33 deleterious(0.02) probably_damaging(0.959) TCGA-DM-A1D4-01 19 8564247 8564247 C T PRAM1 Missense_Mutation p.G149S 0.33 tolerated(1) benign(0.036) TCGA-DM-A1D4-01 19 9061024 9061024 T C MUC16 Missense_Mutation p.S8808G 0.42 unknown(0) TCGA-DM-A1D4-01 19 9063543 9063544 - T MUC16 Frame_Shift_Ins p.T7968Nfs*2 0.30 TCGA-DM-A1D4-01 1 110717527 110717527 T C SLC6A17 Missense_Mutation p.V233A 0.10 tolerated(1) benign(0.004) TCGA-DM-A1D4-01 1 11184573 11184573 G A MTOR Missense_Mutation p.S2215F 0.64 deleterious(0) possibly_damaging(0.69) TCGA-DM-A1D4-01 1 161514725 161514725 G A FCGR3A Missense_Mutation p.R151W 0.59 deleterious(0) benign(0.032) TCGA-DM-A1D4-01 1 165182992 165182992 A G LMX1A Silent p.T185T 0.53 TCGA-DM-A1D4-01 1 165533108 165533108 T A LRRC52 3'UTR 0.25 TCGA-DM-A1D4-01 1 175048705 175048705 G A TNN Missense_Mutation p.V216M 0.47 deleterious(0.03) benign(0.075) TCGA-DM-A1D4-01 1 176709218 176709218 C T PAPPA2 Missense_Mutation p.S1346L 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A1D4-01 1 177001829 177001829 C T ASTN1 Missense_Mutation p.G210S 0.60 deleterious_low_confidence(0) probably_damaging(1) TCGA-DM-A1D4-01 1 181754485 181754485 A C CACNA1E Silent p.A1870A 0.54 TCGA-DM-A1D4-01 1 181767879 181767879 G A CACNA1E Missense_Mutation p.R2284Q 0.36 deleterious(0.04) possibly_damaging(0.614) TCGA-DM-A1D4-01 1 204957851 204957851 G A NFASC Missense_Mutation p.R895H 0.26 tolerated(0.25) probably_damaging(0.999) TCGA-DM-A1D4-01 1 24413275 24413275 T C MYOM3 Missense_Mutation p.S553G 0.09 tolerated(0.07) benign(0.045) TCGA-DM-A1D4-01 1 38188840 38188840 T C EPHA10 Splice_Site p.X612_splice 0.63 TCGA-DM-A1D4-01 1 47144259 47144259 C T EFCAB14 Silent p.L454L 0.08 TCGA-DM-A1D4-01 1 4832366 4832366 G A AJAP1 Missense_Mutation p.R315Q 0.79 deleterious(0.02) benign(0.141) TCGA-DM-A1D4-01 1 55473912 55473912 G T BSND Missense_Mutation p.A192S 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A1D4-01 1 914509 914509 G A C1orf170 Missense_Mutation p.P540L 0.75 tolerated(0.85) benign(0.061) TCGA-DM-A1D4-01 20 40730914 40730914 A G PTPRT Silent p.R1188R 0.10 TCGA-DM-A1D4-01 21 35003806 35003806 C G CRYZL1 Missense_Mutation p.V18L 0.35 tolerated(0.18) benign(0.003) TCGA-DM-A1D4-01 21 38309204 38309204 C T HLCS Missense_Mutation p.E181K 0.39 tolerated(0.17) benign(0.058) TCGA-DM-A1D4-01 22 16287860 16287860 G A POTEH Missense_Mutation p.P9L 0.25 deleterious_low_confidence(0.03) benign(0.015) TCGA-DM-A1D4-01 22 17525817 17525817 G A CECR7 RNA 0.50 TCGA-DM-A1D4-01 22 37900235 37900235 A G CARD10 Missense_Mutation p.I531T 0.08 deleterious(0) possibly_damaging(0.717) TCGA-DM-A1D4-01 22 41625585 41625585 G A L3MBTL2 Missense_Mutation p.G644R 0.50 tolerated(0.12) benign(0.031) TCGA-DM-A1D4-01 22 43435792 43435792 G A TTLL1 Missense_Mutation p.T421I 0.25 deleterious_low_confidence(0) possibly_damaging(0.572) TCGA-DM-A1D4-01 22 50691871 50691871 G A MAPK12 Missense_Mutation p.R355W 0.29 deleterious(0) benign(0.386) TCGA-DM-A1D4-01 22 50988870 50988870 G A KLHDC7B 3'UTR 0.42 TCGA-DM-A1D4-01 2 112838922 112838922 T C TMEM87B Missense_Mutation p.V222A 0.40 tolerated(0.13) benign(0.116) TCGA-DM-A1D4-01 2 11756766 11756766 C T GREB1 Missense_Mutation p.S1111L 0.33 tolerated(0.09) benign(0.003) TCGA-DM-A1D4-01 2 130739678 130739678 C T RAB6C 3'UTR 0.42 TCGA-DM-A1D4-01 2 166895974 166895974 C T SCN1A Missense_Mutation p.A850T 0.34 deleterious(0.03) benign(0.125) TCGA-DM-A1D4-01 2 176794528 176794528 T A KIAA1715 3'UTR 0.45 TCGA-DM-A1D4-01 2 179429955 179429955 G T TTN Silent p.I26968I 0.41 TCGA-DM-A1D4-01 2 186670150 186670150 G T FSIP2 Nonsense_Mutation p.E5462* 0.34 TCGA-DM-A1D4-01 2 188332532 188332533 - C TFPI Frame_Shift_Ins p.N253Kfs*2 0.29 TCGA-DM-A1D4-01 2 189898938 189898938 C T COL5A2 Missense_Mutation p.R1453Q 0.34 unknown(0) TCGA-DM-A1D4-01 2 209358129 209358129 G A PTH2R Silent p.A466A 0.29 TCGA-DM-A1D4-01 2 220116407 220116407 C A TUBA4A Missense_Mutation p.Q85H 0.43 tolerated_low_confidence(0.09) benign(0.004) TCGA-DM-A1D4-01 2 220309843 220309843 G A SPEG Missense_Mutation p.A259T 0.29 benign(0.003) TCGA-DM-A1D4-01 2 224744949 224744949 A G WDFY1 Silent p.D355D 0.55 TCGA-DM-A1D4-01 2 226273789 226273789 C T NYAP2 Missense_Mutation p.R65C 0.47 deleterious(0) probably_damaging(0.989) TCGA-DM-A1D4-01 2 239186427 239186427 G A PER2 Missense_Mutation p.R51W 0.36 deleterious(0.01) possibly_damaging(0.8) TCGA-DM-A1D4-01 2 27527881 27527881 G A TRIM54 Missense_Mutation p.A232T 0.30 tolerated(0.33) benign(0.439) TCGA-DM-A1D4-01 2 5833972 5833972 G A SOX11 Silent p.A373A 0.62 TCGA-DM-A1D4-01 2 68882255 68882255 C A PROKR1 Silent p.G243G 0.45 TCGA-DM-A1D4-01 2 77746795 77746795 G T LRRTM4 Nonsense_Mutation p.S67* 0.35 TCGA-DM-A1D4-01 2 88748285 88748285 C T FOXI3 RNA 0.38 TCGA-DM-A1D4-01 2 97784179 97784179 C T ANKRD36 Silent p.Y137Y 0.39 TCGA-DM-A1D4-01 3 108572744 108572744 A G TRAT1 3'UTR 0.46 TCGA-DM-A1D4-01 3 11060285 11060285 C T SLC6A1 Silent p.G124G 0.38 TCGA-DM-A1D4-01 3 121206607 121206607 T G POLQ Missense_Mutation p.K1724T 0.36 tolerated(0.12) possibly_damaging(0.632) TCGA-DM-A1D4-01 3 122287838 122287838 A T DTX3L Missense_Mutation p.N301I 0.24 tolerated(0.2) benign(0.005) TCGA-DM-A1D4-01 3 12623876 12623876 T G MKRN2 3'UTR 0.31 TCGA-DM-A1D4-01 3 130095357 130095357 G T COL6A5 Missense_Mutation p.Q115H 0.20 deleterious(0.01) possibly_damaging(0.764) TCGA-DM-A1D4-01 3 13413499 13413499 C A NUP210 Missense_Mutation p.A541S 0.40 tolerated(0.09) benign(0.044) TCGA-DM-A1D4-01 3 13669425 13669425 G A FBLN2 Missense_Mutation p.R842H 0.41 tolerated(0.06) probably_damaging(0.944) TCGA-DM-A1D4-01 3 178957754 178957754 C - KCNMB3 3'Flank 0.24 TCGA-DM-A1D4-01 3 179519560 179519560 A G PEX5L 3'UTR 0.43 TCGA-DM-A1D4-01 3 184003325 184003325 G A ECE2 Missense_Mutation p.R521Q 0.33 tolerated(1) benign(0.001) TCGA-DM-A1D4-01 3 33416781 33416781 G A FBXL2 Missense_Mutation p.R220H 0.40 tolerated(0.37) possibly_damaging(0.544) TCGA-DM-A1D4-01 3 41280803 41280803 T A CTNNB1 Missense_Mutation p.N772K 0.52 tolerated_low_confidence(0.16) benign(0.065) TCGA-DM-A1D4-01 3 4735328 4735328 C T ITPR1 Missense_Mutation p.T1380M 0.42 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D4-01 3 48618556 48618556 G A COL7A1 Missense_Mutation p.P1645L 0.30 unknown(0) TCGA-DM-A1D4-01 3 52548442 52548442 G A STAB1 Missense_Mutation p.R1203Q 0.22 tolerated(0.25) benign(0.023) TCGA-DM-A1D4-01 3 77671492 77671492 C T ROBO2 Silent p.D1239D 0.27 TCGA-DM-A1D4-01 3 89528700 89528700 C T EPHA3 3'UTR 0.24 TCGA-DM-A1D4-01 3 93611868 93611868 C T PROS1 Missense_Mutation p.R355H 0.41 tolerated(0.11) probably_damaging(1) TCGA-DM-A1D4-01 4 114264286 114264286 T C ANK2 Silent p.P1412P 0.32 TCGA-DM-A1D4-01 4 126372332 126372334 TGA AG FAT4 Frame_Shift_Del p.D3387Efs*5 0.31 TCGA-DM-A1D4-01 4 155312424 155312424 G T DCHS2 Nonsense_Mutation p.S9* 0.30 TCGA-DM-A1D4-01 4 158065089 158065089 G A GLRB Silent p.A294A 0.36 TCGA-DM-A1D4-01 4 162307318 162307318 T G FSTL5 Missense_Mutation p.I709L 0.30 tolerated(0.36) benign(0.004) TCGA-DM-A1D4-01 4 165962417 165962417 C T TRIM60 Missense_Mutation p.A398V 0.40 tolerated(0.49) benign(0.021) TCGA-DM-A1D4-01 4 183064108 183064108 T C AC108142.1 RNA 0.09 TCGA-DM-A1D4-01 4 74313258 74313258 T C AFP Missense_Mutation p.L308P 0.39 deleterious(0) probably_damaging(0.939) TCGA-DM-A1D4-01 4 7640153 7640153 C T SORCS2 Silent p.F249F 0.46 TCGA-DM-A1D4-01 4 77057499 77057499 G A NUP54 Missense_Mutation p.A121V 0.38 tolerated(0.37) benign(0.292) TCGA-DM-A1D4-01 4 78694267 78694267 C T CNOT6L Missense_Mutation p.R123Q 0.37 tolerated(0.07) benign(0.285) TCGA-DM-A1D4-01 4 88536340 88536340 C T DSPP Silent p.S842S 0.36 TCGA-DM-A1D4-01 5 112154809 112154810 AC - APC Frame_Shift_Del p.H361Wfs*3 0.39 TCGA-DM-A1D4-01 5 13809271 13809271 C T DNAH5 Missense_Mutation p.R2545H 0.27 possibly_damaging(0.522) TCGA-DM-A1D4-01 5 140057507 140057507 C T HARS Missense_Mutation p.D206N 0.40 tolerated(0.21) benign(0.02) TCGA-DM-A1D4-01 5 140725890 140725890 C T PCDHGA3 Missense_Mutation p.R764W 0.38 deleterious_low_confidence(0) benign(0.251) TCGA-DM-A1D4-01 5 140762645 140762645 C T PCDHGA7 Missense_Mutation p.A60V 0.45 tolerated_low_confidence(0.06) benign(0.089) TCGA-DM-A1D4-01 5 150727031 150727031 A G SLC36A2 5'UTR 0.08 TCGA-DM-A1D4-01 5 158705357 158705357 C A UBLCP1 Missense_Mutation p.L266I 0.40 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D4-01 5 167655002 167655002 C T TENM2 Missense_Mutation p.A1796V 0.36 deleterious(0.05) possibly_damaging(0.522) TCGA-DM-A1D4-01 5 177156496 177156496 C T FAM153A Missense_Mutation p.G231E 0.43 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-DM-A1D4-01 5 177672955 177672955 C T COL23A1 Silent p.E476E 0.37 TCGA-DM-A1D4-01 5 41927329 41927329 C T FBXO4 Missense_Mutation p.A135V 0.38 tolerated(0.28) benign(0.005) TCGA-DM-A1D4-01 5 78376648 78376648 C T BHMT2 Nonsense_Mutation p.R133* 0.37 TCGA-DM-A1D4-01 5 94030661 94030661 G A ANKRD32 Missense_Mutation p.A941T 0.67 tolerated(0.21) benign(0.031) TCGA-DM-A1D4-01 6 10874798 10874798 G A GCM2 Silent p.Y317Y 0.44 TCGA-DM-A1D4-01 6 109764087 109764087 G T SMPD2 Missense_Mutation p.K208N 0.47 tolerated(0.06) benign(0.02) TCGA-DM-A1D4-01 6 125397873 125397873 G A RNF217 Missense_Mutation p.R159Q 0.39 tolerated(0.06) probably_damaging(0.936) TCGA-DM-A1D4-01 6 128031146 128031146 T C THEMIS Missense_Mutation p.E676G 0.32 deleterious_low_confidence(0.01) benign(0.16) TCGA-DM-A1D4-01 6 128150753 128150753 G A THEMIS Missense_Mutation p.P193S 0.30 tolerated(0.06) possibly_damaging(0.586) TCGA-DM-A1D4-01 6 26199789 26199789 G A HIST1H2BF Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0.04) unknown(0) TCGA-DM-A1D4-01 6 32017060 32017060 G A TNXB 5'Flank 0.31 TCGA-DM-A1D4-01 6 32116932 32116932 G A PRRT1 3'UTR 0.42 TCGA-DM-A1D4-01 6 32151346 32151346 C T AGER Missense_Mutation p.R114Q 0.24 tolerated(0.4) benign(0.002) TCGA-DM-A1D4-01 6 34101143 34101143 C T GRM4 Missense_Mutation p.R44H 0.60 deleterious(0.04) probably_damaging(0.996) TCGA-DM-A1D4-01 6 43752451 43752451 G A VEGFA 3'Flank 0.32 TCGA-DM-A1D4-01 6 69349100 69349100 G A BAI3 Missense_Mutation p.C178Y 0.49 deleterious(0) probably_damaging(0.974) TCGA-DM-A1D4-01 6 74079008 74079008 G A OOEP Silent p.F97F 0.47 TCGA-DM-A1D4-01 6 90333750 90333750 C T ANKRD6 Missense_Mutation p.R398W 0.41 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D4-01 6 97609951 97609951 G T MMS22L Missense_Mutation p.N1104K 0.36 tolerated(0.15) benign(0.003) TCGA-DM-A1D4-01 7 100417776 100417776 A G EPHB4 Silent p.G317G 0.08 TCGA-DM-A1D4-01 7 103236985 103236985 C A RELN Missense_Mutation p.V1153F 0.34 deleterious(0) possibly_damaging(0.464) TCGA-DM-A1D4-01 7 123600077 123600077 G A SPAM1 Intron 0.19 TCGA-DM-A1D4-01 7 130003313 130003313 C G CPA5 Silent p.G267G 0.25 TCGA-DM-A1D4-01 7 14724957 14724957 G A DGKB Nonsense_Mutation p.R248* 0.62 TCGA-DM-A1D4-01 7 147844726 147844726 C A CNTNAP2 Silent p.R900R 0.27 TCGA-DM-A1D4-01 7 150174763 150174763 C T GIMAP8 Silent p.S631S 0.33 TCGA-DM-A1D4-01 7 23768784 23768784 G T STK31 Missense_Mutation p.E133D 0.20 tolerated(1) benign(0.006) TCGA-DM-A1D4-01 7 30492008 30492008 A G NOD1 Missense_Mutation p.F342S 0.25 tolerated(0.07) benign(0.16) TCGA-DM-A1D4-01 7 32091174 32091174 C T PDE1C Intron 0.23 TCGA-DM-A1D4-01 7 38433787 38433787 C T AMPH Missense_Mutation p.A476T 0.09 tolerated(0.65) benign(0.001) TCGA-DM-A1D4-01 7 48467372 48467372 A T ABCA13 Missense_Mutation p.M4157L 0.30 benign(0.007) TCGA-DM-A1D4-01 7 64388209 64388209 A T ZNF273 Missense_Mutation p.Q168L 0.22 deleterious(0.01) probably_damaging(0.953) TCGA-DM-A1D4-01 7 75695902 75695902 G C MDH2 3'UTR 0.36 TCGA-DM-A1D4-01 7 82764087 82764087 C T PCLO Missense_Mutation p.V927M 0.30 unknown(0) TCGA-DM-A1D4-01 7 888061 888061 C T SUN1 Intron 0.57 TCGA-DM-A1D4-01 7 91742820 91742820 A G CYP51A1 3'UTR 0.21 TCGA-DM-A1D4-01 7 92733038 92733038 G A SAMD9 Silent p.Y791Y 0.27 TCGA-DM-A1D4-01 7 99725336 99725336 C A MBLAC1 Missense_Mutation p.D106E 0.38 tolerated(0.13) possibly_damaging(0.576) TCGA-DM-A1D4-01 8 10470098 10470098 C T RP1L1 Missense_Mutation p.G504S 0.20 benign(0.04) TCGA-DM-A1D4-01 8 134269051 134269051 G A NDRG1 Missense_Mutation p.A169V 0.32 deleterious(0) probably_damaging(0.992) TCGA-DM-A1D4-01 8 24771769 24771769 C T NEFM Missense_Mutation p.R155C 0.63 deleterious(0.02) unknown(0) TCGA-DM-A1D4-01 8 27779571 27779571 C T SCARA5 Missense_Mutation p.A145T 0.73 tolerated(0.65) benign(0.002) TCGA-DM-A1D4-01 8 55538953 55538953 A G RP1 Silent p.Q837Q 0.37 TCGA-DM-A1D4-01 8 61178601 61178601 C T CA8 Silent p.S100S 0.37 TCGA-DM-A1D4-01 8 92972425 92972425 C T RUNX1T1 3'UTR 0.34 TCGA-DM-A1D4-01 9 100326387 100326387 A G TMOD1 Silent p.E185E 0.33 TCGA-DM-A1D4-01 9 103947831 103947831 T C LPPR1 Missense_Mutation p.F19L 0.36 tolerated(0.08) benign(0.002) TCGA-DM-A1D4-01 9 125551912 125551912 C T OR5C1 Missense_Mutation p.S234L 0.79 deleterious(0) possibly_damaging(0.713) TCGA-DM-A1D4-01 9 136513026 136513026 C T DBH Silent p.N361N 0.83 TCGA-DM-A1D4-01 9 21077415 21077415 G T IFNB1 Missense_Mutation p.H152N 0.28 tolerated(0.27) benign(0.001) TCGA-DM-A1D4-01 9 2647575 2647575 C A VLDLR Missense_Mutation p.P602H 0.38 deleterious(0) probably_damaging(1) TCGA-DM-A1D4-01 9 27229162 27229162 G A TEK Missense_Mutation p.V1103M 0.40 deleterious(0) probably_damaging(0.988) TCGA-DM-A1D4-01 9 32630964 32630964 C A TAF1L Missense_Mutation p.M1538I 0.38 tolerated(0.19) possibly_damaging(0.78) TCGA-DM-A1D4-01 9 70177780 70177780 C T FOXD4L5 Silent p.A68A 0.20 TCGA-DM-A1D4-01 9 73002809 73002809 C T KLF9 Silent p.P206P 0.35 TCGA-DM-A1D4-01 X 151935173 151935173 C G MAGEA3 3'UTR 0.78 TCGA-DM-A1D4-01 X 54952111 54952111 G C TRO Silent p.L524L 0.81 TCGA-DM-A1D4-01 X 78011934 78011935 - G LPAR4 3'UTR 0.42 TCGA-DM-A1D6-01 10 105350166 105350166 C T NEURL1 3'UTR 0.47 TCGA-DM-A1D6-01 10 21807002 21807002 A T SKIDA1 5'UTR 0.47 TCGA-DM-A1D6-01 10 60549092 60549092 A C BICC1 Missense_Mutation p.N224T 0.46 tolerated(0.37) benign(0.055) TCGA-DM-A1D6-01 10 71332338 71332338 C T NEUROG3 Silent p.P154P 0.43 TCGA-DM-A1D6-01 10 73846715 73846716 - GCCT SPOCK2 Intron 0.50 TCGA-DM-A1D6-01 11 119031617 119031617 C T ABCG4 Missense_Mutation p.T581M 0.86 deleterious(0) benign(0.108) TCGA-DM-A1D6-01 11 119996548 119996548 G A TRIM29 Missense_Mutation p.T395I 0.82 deleterious(0.05) possibly_damaging(0.675) TCGA-DM-A1D6-01 11 67290769 67290769 C T CABP2 Missense_Mutation p.R10H 0.82 tolerated_low_confidence(0.18) benign(0) TCGA-DM-A1D6-01 11 92714945 92714945 C T MTNR1B Missense_Mutation p.R186C 0.87 deleterious(0.02) benign(0.373) TCGA-DM-A1D6-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-DM-A1D6-01 12 31568331 31568331 G A DENND5B Missense_Mutation p.T841M 0.36 deleterious(0.01) possibly_damaging(0.671) TCGA-DM-A1D6-01 12 40223982 40223982 C T SLC2A13 Silent p.K456K 0.44 TCGA-DM-A1D6-01 12 49440152 49440152 G A KMT2D Nonsense_Mutation p.Q1492* 0.55 TCGA-DM-A1D6-01 12 50571180 50571180 T C LIMA1 Silent p.G650G 0.44 TCGA-DM-A1D6-01 12 52866987 52866987 C T KRT6C Missense_Mutation p.D179N 0.39 deleterious(0) probably_damaging(0.993) TCGA-DM-A1D6-01 12 53473115 53473115 C T SPRYD3 Translation_Start_Site p.M1? 0.38 tolerated_low_confidence(0.06) benign(0.001) TCGA-DM-A1D6-01 12 55421151 55421151 G C NEUROD4 Missense_Mutation p.D310H 0.41 deleterious(0) possibly_damaging(0.907) TCGA-DM-A1D6-01 12 65445171 65445171 G T WIF1 Silent p.A366A 0.47 TCGA-DM-A1D6-01 12 65857110 65857110 G T MSRB3 3'UTR 0.44 TCGA-DM-A1D6-01 13 101717782 101717782 G A NALCN Silent p.G1526G 0.44 TCGA-DM-A1D6-01 13 113973809 113973809 T C LAMP1 Silent p.P196P 0.10 TCGA-DM-A1D6-01 13 44734908 44734908 G A SMIM2 Silent p.F28F 0.50 TCGA-DM-A1D6-01 14 20344579 20344579 G T OR4K2 Silent p.V51V 0.06 TCGA-DM-A1D6-01 14 24546196 24546196 G A CPNE6 Missense_Mutation p.R425Q 0.11 tolerated(1) benign(0.002) TCGA-DM-A1D6-01 14 25076907 25076907 G A GZMH Missense_Mutation p.R84W 0.42 deleterious(0.04) benign(0.035) TCGA-DM-A1D6-01 14 70175424 70175424 C T KIAA0247 Silent p.V163V 0.37 TCGA-DM-A1D6-01 14 70420157 70420157 C T SMOC1 Missense_Mutation p.R96C 0.49 tolerated(0.19) possibly_damaging(0.595) TCGA-DM-A1D6-01 14 73726173 73726173 C T PAPLN Silent p.H608H 0.22 TCGA-DM-A1D6-01 14 75573212 75573212 G A NEK9 Silent p.G507G 0.45 TCGA-DM-A1D6-01 15 101440899 101440899 G A ALDH1A3 Missense_Mutation p.V335M 0.41 deleterious(0.03) probably_damaging(0.958) TCGA-DM-A1D6-01 15 42116730 42116730 G A MAPKBP1 Missense_Mutation p.R1427H 0.53 tolerated(0.13) benign(0.008) TCGA-DM-A1D6-01 15 42149595 42149595 C T SPTBN5 Missense_Mutation p.G2821E 0.38 benign(0.081) TCGA-DM-A1D6-01 15 50595302 50595302 C A GABPB1 Missense_Mutation p.A99S 0.39 deleterious(0.05) possibly_damaging(0.823) TCGA-DM-A1D6-01 15 55611399 55611399 G A PIGB 5'UTR 0.94 TCGA-DM-A1D6-01 15 74372981 74372981 G A GOLGA6A Silent p.S60S 0.24 TCGA-DM-A1D6-01 16 24919406 24919406 C T SLC5A11 Missense_Mutation p.A463V 0.30 deleterious(0.02) probably_damaging(0.966) TCGA-DM-A1D6-01 16 2811881 2811881 G A SRRM2 Missense_Mutation p.R451Q 0.79 unknown(0) TCGA-DM-A1D6-01 16 30102166 30102166 G A TBX6 Missense_Mutation p.P89L 0.25 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D6-01 16 31160546 31160546 G A PRSS36 Silent p.R40R 0.57 TCGA-DM-A1D6-01 16 47644807 47644807 C T PHKB Silent p.N478N 0.42 TCGA-DM-A1D6-01 16 48395626 48395626 C T LONP2 3'Flank 0.44 TCGA-DM-A1D6-01 16 57416939 57416939 G A CX3CL1 Missense_Mutation p.V397M 0.27 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D6-01 16 67268268 67268268 C T FHOD1 Missense_Mutation p.G476E 0.39 tolerated(0.32) benign(0.016) TCGA-DM-A1D6-01 16 68025768 68025768 G A DPEP2 Missense_Mutation p.T212M 0.48 deleterious(0.02) possibly_damaging(0.854) TCGA-DM-A1D6-01 17 42636783 42636783 C T FZD2 3'UTR 0.56 TCGA-DM-A1D6-01 17 4997712 4997712 A C ZFP3 3'UTR 0.42 TCGA-DM-A1D6-01 17 61988129 61988129 C G CSHL1 Missense_Mutation p.E56Q 0.44 deleterious(0.03) probably_damaging(0.968) TCGA-DM-A1D6-01 17 63554545 63554545 G A AXIN2 Missense_Mutation p.P65L 0.58 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D6-01 17 6606291 6606291 G A SLC13A5 Silent p.N238N 0.46 TCGA-DM-A1D6-01 17 66366606 66366606 A G ARSG Missense_Mutation p.Q308R 0.33 tolerated(0.17) benign(0.021) TCGA-DM-A1D6-01 17 67150036 67150036 G C ABCA10 Missense_Mutation p.H1301D 0.48 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D6-01 17 72850932 72850932 G T GRIN2C Missense_Mutation p.D100E 0.46 tolerated(0.31) benign(0.262) TCGA-DM-A1D6-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.40 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D6-01 17 7577106 7577106 G T TP53 Missense_Mutation p.P278T 0.46 deleterious(0) probably_damaging(1) TCGA-DM-A1D6-01 17 78268724 78268724 T G RNF213 Missense_Mutation p.F559L 0.35 probably_damaging(0.994) TCGA-DM-A1D6-01 18 74092165 74092165 C T ZNF516 Silent p.S635S 0.45 TCGA-DM-A1D6-01 19 17571500 17571500 C T NXNL1 Missense_Mutation p.R60Q 0.43 tolerated(0.21) benign(0.036) TCGA-DM-A1D6-01 19 18174799 18174799 T C IL12RB1 Missense_Mutation p.E502G 0.08 deleterious(0.04) probably_damaging(0.928) TCGA-DM-A1D6-01 19 38375613 38375613 G C WDR87 Missense_Mutation p.L2861V 0.46 unknown(0) TCGA-DM-A1D6-01 19 40721142 40721142 G A MAP3K10 Missense_Mutation p.M936I 0.37 tolerated(0.17) benign(0.009) TCGA-DM-A1D6-01 19 48259944 48259944 G A GLTSCR2 Splice_Site p.X458_splice 0.30 TCGA-DM-A1D6-01 19 54292011 54292011 C T NLRP12 3'Flank 0.52 TCGA-DM-A1D6-01 19 7794352 7794352 C T CLEC4G Missense_Mutation p.R261H 0.58 tolerated(0.17) benign(0.064) TCGA-DM-A1D6-01 1 142621035 142621035 G A RP11-417J8.6 RNA 0.35 TCGA-DM-A1D6-01 1 151823536 151823536 G A THEM5 Missense_Mutation p.P153S 0.10 tolerated(0.21) benign(0.004) TCGA-DM-A1D6-01 1 152286915 152286915 C T FLG Silent p.G149G 0.04 TCGA-DM-A1D6-01 1 155006251 155006251 G A DCST2 5'Flank 0.48 TCGA-DM-A1D6-01 1 156703836 156703836 C T RRNAD1 Silent p.H224H 0.40 TCGA-DM-A1D6-01 1 182026725 182026725 G A ZNF648 Missense_Mutation p.L141F 0.46 tolerated(0.32) benign(0.002) TCGA-DM-A1D6-01 1 183546806 183546806 C T NCF2 Silent p.L98L 0.54 TCGA-DM-A1D6-01 1 203452294 203452294 C A PRELP Intron 0.46 TCGA-DM-A1D6-01 1 206905892 206905892 A G MAPKAPK2 Intron 0.45 TCGA-DM-A1D6-01 1 223168248 223168248 T C DISP1 Missense_Mutation p.V304A 0.45 deleterious(0) possibly_damaging(0.842) TCGA-DM-A1D6-01 1 25944712 25944712 C T MAN1C1 Missense_Mutation p.R142C 0.90 deleterious(0.04) benign(0.163) TCGA-DM-A1D6-01 1 27699708 27699708 G A FCN3 Silent p.S104S 0.12 TCGA-DM-A1D6-01 1 57173473 57173473 G A PRKAA2 3'UTR 0.77 TCGA-DM-A1D6-01 1 90179960 90179960 C G LRRC8C Missense_Mutation p.L611V 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-DM-A1D6-01 20 25507085 25507085 C T NINL Missense_Mutation p.V47I 0.61 tolerated(0.83) benign(0.001) TCGA-DM-A1D6-01 20 47864141 47864141 T A ZNFX1 Missense_Mutation p.Q1807L 0.33 tolerated(0.32) benign(0.021) TCGA-DM-A1D6-01 20 52194910 52194910 T A ZNF217 Silent p.S482S 0.28 TCGA-DM-A1D6-01 20 52824513 52824513 G T PFDN4 5'UTR 0.27 TCGA-DM-A1D6-01 22 21797035 21797035 T G HIC2 5'UTR 0.26 TCGA-DM-A1D6-01 22 23055414 23055414 C T IGLV3-21 Missense_Mutation p.P26L 0.40 tolerated(0.07) benign(0.227) TCGA-DM-A1D6-01 22 30812075 30812075 A T SEC14L2 Missense_Mutation p.R304W 0.41 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D6-01 22 50882697 50882697 G A PPP6R2 3'UTR 0.50 TCGA-DM-A1D6-01 2 11802315 11802320 TCAGGA - NTSR2 In_Frame_Del p.F224_N226delinsY 0.33 TCGA-DM-A1D6-01 2 133486463 133486463 C T NCKAP5 Missense_Mutation p.G1836R 0.30 tolerated(0.1) benign(0.003) TCGA-DM-A1D6-01 2 169791925 169791925 T A ABCB11 Missense_Mutation p.E942V 0.49 deleterious(0) probably_damaging(1) TCGA-DM-A1D6-01 2 172683390 172683390 C T SLC25A12 Missense_Mutation p.R283H 0.32 tolerated(0.08) benign(0.075) TCGA-DM-A1D6-01 2 179412684 179412684 C A TTN Missense_Mutation p.Q31223H 0.07 TCGA-DM-A1D6-01 2 200245104 200245104 C T SATB2 Missense_Mutation p.E194K 0.43 deleterious(0.01) benign(0.394) TCGA-DM-A1D6-01 2 239057669 239057669 C T KLHL30 Missense_Mutation p.S454L 0.33 tolerated(0.05) probably_damaging(0.942) TCGA-DM-A1D6-01 2 241078761 241078761 C T OTOS Silent p.A32A 0.38 TCGA-DM-A1D6-01 2 29445212 29445212 G T ALK Silent p.I1171I 0.53 TCGA-DM-A1D6-01 3 118870232 118870232 G T C3orf30 3'UTR 0.29 TCGA-DM-A1D6-01 3 160122563 160122563 G T SMC4 Intron 0.10 TCGA-DM-A1D6-01 3 190573053 190573053 G A GMNC 3'UTR 0.53 TCGA-DM-A1D6-01 3 193019039 193019039 G A ATP13A5 Silent p.Y912Y 0.44 TCGA-DM-A1D6-01 3 369876 369876 C A CHL1 Missense_Mutation p.P75H 0.41 tolerated(0.27) benign(0.037) TCGA-DM-A1D6-01 3 403388 403388 G A CHL1 Missense_Mutation p.R438H 0.42 tolerated(0.37) benign(0.005) TCGA-DM-A1D6-01 3 62189047 62189047 C G PTPRG Missense_Mutation p.I526M 0.50 tolerated(0.06) possibly_damaging(0.813) TCGA-DM-A1D6-01 3 62357937 62357937 C T FEZF2 Missense_Mutation p.A203T 0.37 tolerated(0.24) possibly_damaging(0.821) TCGA-DM-A1D6-01 3 78719378 78719378 G A ROBO1 Silent p.F472F 0.41 TCGA-DM-A1D6-01 4 114251430 114251430 C T ANK2 Nonsense_Mutation p.R977* 0.48 TCGA-DM-A1D6-01 4 187201210 187201210 C T F11 Missense_Mutation p.T267I 0.55 tolerated(0.1) benign(0.005) TCGA-DM-A1D6-01 4 5682987 5682987 C T EVC2 Silent p.T290T 0.38 TCGA-DM-A1D6-01 4 6711068 6711068 A G MRFAP1L1 Missense_Mutation p.C97R 0.35 deleterious(0.01) possibly_damaging(0.588) TCGA-DM-A1D6-01 4 68053 68053 C G Z95704.1 3'Flank 0.46 TCGA-DM-A1D6-01 4 69184563 69184563 G C YTHDC1 Missense_Mutation p.R568G 0.12 deleterious(0) possibly_damaging(0.77) TCGA-DM-A1D6-01 4 76813095 76813095 C T PPEF2 Missense_Mutation p.R31Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D6-01 5 112175235 112175235 C G APC Nonsense_Mutation p.S1315* 0.88 TCGA-DM-A1D6-01 5 140187859 140187859 G A PCDHA4 Missense_Mutation p.A363T 0.33 tolerated_low_confidence(0.09) benign(0.187) TCGA-DM-A1D6-01 5 140215330 140215330 G A PCDHA7 Silent p.A454A 0.46 TCGA-DM-A1D6-01 5 140346740 140346740 C T PCDHAC2 Missense_Mutation p.A130V 0.44 deleterious(0) benign(0.166) TCGA-DM-A1D6-01 5 156376689 156376689 C T TIMD4 Missense_Mutation p.A245T 0.43 tolerated(0.39) benign(0.012) TCGA-DM-A1D6-01 5 15937268 15937268 C T FBXL7 Silent p.I483I 0.42 TCGA-DM-A1D6-01 5 167674826 167674826 C T TENM2 Silent p.S2294S 0.49 TCGA-DM-A1D6-01 5 178391870 178391870 C T ZNF454 Silent p.S155S 0.40 TCGA-DM-A1D6-01 5 1879734 1879734 G A IRX4 Missense_Mutation p.T207M 0.50 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D6-01 5 54281144 54281144 T C ESM1 Missense_Mutation p.T68A 0.47 tolerated(0.08) probably_damaging(0.999) TCGA-DM-A1D6-01 5 57913516 57913516 A T RAB3C Missense_Mutation p.D24V 0.47 deleterious(0) possibly_damaging(0.544) TCGA-DM-A1D6-01 5 86645041 86645041 C G RASA1 Silent p.V371V 0.43 TCGA-DM-A1D6-01 6 106552891 106552891 C T PRDM1 Missense_Mutation p.R286C 0.34 tolerated(0.07) benign(0.017) TCGA-DM-A1D6-01 6 149777984 149777984 C T ZC3H12D Silent p.P166P 0.73 TCGA-DM-A1D6-01 6 28501867 28501867 C T GPX5 Missense_Mutation p.R197C 0.41 deleterious(0) possibly_damaging(0.889) TCGA-DM-A1D6-01 6 74533394 74533394 C A CD109 3'UTR 0.49 TCGA-DM-A1D6-01 6 75831096 75831096 G A COL12A1 Silent p.D2336D 0.38 TCGA-DM-A1D6-01 6 83842024 83842024 C T DOPEY1 Nonsense_Mutation p.Q916* 0.43 TCGA-DM-A1D6-01 7 103018978 103018978 A C SLC26A5 Missense_Mutation p.I567S 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A1D6-01 7 127251077 127251077 G T PAX4 3'UTR 0.28 TCGA-DM-A1D6-01 7 139416738 139416738 T G HIPK2 Missense_Mutation p.K32N 0.32 deleterious(0) probably_damaging(0.986) TCGA-DM-A1D6-01 7 141631569 141631569 G A CLEC5A Missense_Mutation p.R135C 0.34 tolerated(0.08) possibly_damaging(0.598) TCGA-DM-A1D6-01 7 142622704 142622704 C T TRPV5 Missense_Mutation p.V348I 0.35 tolerated(0.47) benign(0.013) TCGA-DM-A1D6-01 7 29976203 29976203 G A SCRN1 Missense_Mutation p.H312Y 0.27 deleterious(0) possibly_damaging(0.745) TCGA-DM-A1D6-01 7 30029649 30029649 A G SCRN1 Intron 0.25 TCGA-DM-A1D6-01 7 33136923 33136923 A G RP9 Missense_Mutation p.F122S 0.25 deleterious(0) benign(0.127) TCGA-DM-A1D6-01 7 36373702 36373703 - T KIAA0895 Frame_Shift_Ins p.H357Tfs*2 0.27 TCGA-DM-A1D6-01 7 42977140 42977140 G A MRPL32 Missense_Mutation p.D178N 0.29 tolerated(0.74) benign(0.002) TCGA-DM-A1D6-01 7 44187278 44187278 G A GCK Silent p.D279D 0.33 TCGA-DM-A1D6-01 7 53103577 53103577 G A POM121L12 Silent p.P71P 0.42 TCGA-DM-A1D6-01 7 5800681 5800681 T C RNF216 Missense_Mutation p.N7S 0.59 deleterious_low_confidence(0.04) benign(0.009) TCGA-DM-A1D6-01 7 66703495 66703495 A - TYW1 Frame_Shift_Del p.K727Rfs*10 0.26 TCGA-DM-A1D6-01 7 90897832 90897832 A G FZD1 3'UTR 0.25 TCGA-DM-A1D6-01 8 117864858 117864858 G A RAD21 Silent p.L417L 0.78 TCGA-DM-A1D6-01 8 128429431 128429431 G T POU5F1B 3'UTR 0.14 TCGA-DM-A1D6-01 8 623579 623579 G A ERICH1 Missense_Mutation p.P258L 0.64 tolerated_low_confidence(0.69) benign(0.002) TCGA-DM-A1D6-01 9 119976809 119976809 G A ASTN2 Silent p.G281G 0.49 TCGA-DM-A1D6-01 9 129453247 129453247 C T LMX1B Silent p.G153G 0.34 TCGA-DM-A1D6-01 9 129458245 129458245 G A LMX1B Silent p.T349T 0.51 TCGA-DM-A1D6-01 9 139617903 139617903 G A FAM69B Missense_Mutation p.V325M 0.40 deleterious(0.02) probably_damaging(0.989) TCGA-DM-A1D6-01 9 139904516 139904516 C T ABCA2 Silent p.A2138A 0.45 TCGA-DM-A1D6-01 9 84300630 84300630 A G TLE1 Silent p.Y65Y 0.45 TCGA-DM-A1D6-01 X 101096731 101096731 C T NXF5 Missense_Mutation p.R52Q 0.86 tolerated(0.84) benign(0.03) TCGA-DM-A1D6-01 X 110653460 110653460 C T DCX Missense_Mutation p.R137H 0.92 deleterious(0.05) benign(0.435) TCGA-DM-A1D6-01 X 591749 591749 G T SHOX Missense_Mutation p.L39F 0.17 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-DM-A1D6-01 X 69573529 69573529 G T KIF4A Missense_Mutation p.A516S 0.22 deleterious(0.01) possibly_damaging(0.877) TCGA-DM-A1D7-01 10 100219419 100219419 C A HPSE2 Missense_Mutation p.R564L 0.22 tolerated(0.22) probably_damaging(0.994) TCGA-DM-A1D7-01 10 112764483 112764483 C G SHOC2 Missense_Mutation p.H364Q 0.20 deleterious(0.01) benign(0.226) TCGA-DM-A1D7-01 10 124399646 124399646 G A DMBT1 Missense_Mutation p.V2216I 0.08 tolerated(0.44) benign(0.042) TCGA-DM-A1D7-01 10 17126270 17126270 C T CUBN Silent p.E767E 0.21 TCGA-DM-A1D7-01 10 27964188 27964188 A T MKX Silent p.T343T 0.36 TCGA-DM-A1D7-01 10 28527506 28527506 T C MPP7 Missense_Mutation p.S10G 0.10 tolerated(0.52) benign(0) TCGA-DM-A1D7-01 10 71166848 71166848 G A TACR2 Silent p.L310L 0.36 TCGA-DM-A1D7-01 10 98130032 98130032 C A TLL2 Missense_Mutation p.E901D 0.15 tolerated(1) benign(0.002) TCGA-DM-A1D7-01 10 99655049 99655049 C G CRTAC1 Missense_Mutation p.G480A 0.31 deleterious(0.01) probably_damaging(0.912) TCGA-DM-A1D7-01 11 113628453 113628453 A T ZW10 Missense_Mutation p.Y286N 0.38 tolerated(0.3) benign(0.004) TCGA-DM-A1D7-01 11 130058550 130058550 G T ST14 Missense_Mutation p.A123S 0.23 tolerated(0.26) benign(0.434) TCGA-DM-A1D7-01 11 55340189 55340189 C A OR4C16 Missense_Mutation p.L196I 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-DM-A1D7-01 11 57314066 57314066 C T SMTNL1 Silent p.Y445Y 0.13 TCGA-DM-A1D7-01 11 57571095 57571095 A C CTNND1 Missense_Mutation p.T475P 0.37 deleterious(0) probably_damaging(1) TCGA-DM-A1D7-01 11 61675748 61675748 C T RAB3IL1 Silent p.P14P 0.44 TCGA-DM-A1D7-01 11 62287402 62287402 G A AHNAK Silent p.D4829D 0.41 TCGA-DM-A1D7-01 11 67430719 67430719 C A ALDH3B2 Missense_Mutation p.W375C 0.49 deleterious(0.02) possibly_damaging(0.592) TCGA-DM-A1D7-01 11 73101855 73101855 C T RELT Missense_Mutation p.A59V 0.39 deleterious(0.01) benign(0.034) TCGA-DM-A1D7-01 11 7981685 7981685 G A NLRP10 Missense_Mutation p.R492C 0.21 tolerated(0.33) benign(0.001) TCGA-DM-A1D7-01 11 89424170 89424170 G C FOLH1B RNA 0.19 TCGA-DM-A1D7-01 12 101016162 101016162 T G GAS2L3 Splice_Site p.X252_splice 0.11 TCGA-DM-A1D7-01 12 101436211 101436211 G T ANO4 Missense_Mutation p.L338F 0.27 tolerated(0.17) benign(0.075) TCGA-DM-A1D7-01 12 101603313 101603313 G T SLC5A8 Missense_Mutation p.P105Q 0.35 deleterious(0) probably_damaging(0.994) TCGA-DM-A1D7-01 12 108102886 108102886 A T PWP1 Splice_Site p.X390_splice 0.37 TCGA-DM-A1D7-01 12 23908593 23908593 C A SOX5 Missense_Mutation p.G183W 0.14 tolerated(0.19) probably_damaging(0.994) TCGA-DM-A1D7-01 12 25378561 25378561 G A KRAS Missense_Mutation p.A146V 0.31 deleterious(0.02) probably_damaging(0.909) TCGA-DM-A1D7-01 12 53499358 53499358 T A SOAT2 Missense_Mutation p.S97T 0.33 tolerated(0.57) benign(0.002) TCGA-DM-A1D7-01 12 57064081 57064081 G C PTGES3 Missense_Mutation p.S118C 0.36 deleterious(0.01) possibly_damaging(0.867) TCGA-DM-A1D7-01 12 66563681 66563681 G A TMBIM4 Silent p.F17F 0.28 TCGA-DM-A1D7-01 12 8211864 8211864 G A C3AR1 Silent p.Y306Y 0.05 TCGA-DM-A1D7-01 12 9348945 9348945 C A PZP Missense_Mutation p.G358V 0.46 deleterious(0) probably_damaging(0.984) TCGA-DM-A1D7-01 13 111944571 111944571 A G ARHGEF7 Silent p.S768S 0.48 TCGA-DM-A1D7-01 13 19752465 19752465 G A TUBA3C Missense_Mutation p.A99V 0.10 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-DM-A1D7-01 13 29599666 29599666 C T MTUS2 Silent p.S287S 0.32 TCGA-DM-A1D7-01 13 33092085 33092085 C T N4BP2L2 Missense_Mutation p.E107K 0.29 deleterious(0) probably_damaging(0.988) TCGA-DM-A1D7-01 13 36445403 36445403 C T DCLK1 Missense_Mutation p.G300R 0.13 tolerated(0.14) probably_damaging(0.979) TCGA-DM-A1D7-01 13 40175139 40175139 G A LHFP Missense_Mutation p.A72V 0.18 deleterious(0) probably_damaging(0.996) TCGA-DM-A1D7-01 13 58298964 58298964 C T PCDH17 Nonsense_Mutation p.R1006* 0.13 TCGA-DM-A1D7-01 13 97639561 97639561 A C OXGR1 Silent p.V151V 0.20 TCGA-DM-A1D7-01 14 105054195 105054195 C T C14orf180 Missense_Mutation p.P74L 0.30 deleterious(0) probably_damaging(0.988) TCGA-DM-A1D7-01 14 80271508 80271508 C A NRXN3 Missense_Mutation p.D953E 0.27 deleterious(0.03) benign(0) TCGA-DM-A1D7-01 14 94107537 94107537 G A UNC79 Missense_Mutation p.M1811I 0.15 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-DM-A1D7-01 15 100636647 100636647 G T ADAMTS17 Missense_Mutation p.A684D 0.22 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D7-01 15 21051229 21051229 G T POTEB2 Missense_Mutation p.P411T 0.06 deleterious(0.03) benign(0.034) TCGA-DM-A1D7-01 15 23812874 23812874 A T MKRN3 3'UTR 0.06 TCGA-DM-A1D7-01 15 48718026 48718026 G A FBN1 Nonsense_Mutation p.R2414* 0.25 TCGA-DM-A1D7-01 15 74623332 74623332 G A CCDC33 Missense_Mutation p.R519Q 0.12 tolerated(0.07) benign(0.003) TCGA-DM-A1D7-01 15 76496456 76496456 C A C15orf27 Missense_Mutation p.P466T 0.45 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-DM-A1D7-01 16 1248710 1248710 G A CACNA1H Missense_Mutation p.V247I 0.23 tolerated(0.31) benign(0.088) TCGA-DM-A1D7-01 16 23569546 23569546 T C UBFD1 Missense_Mutation p.F101L 0.46 tolerated(0.43) benign(0.002) TCGA-DM-A1D7-01 16 30727440 30727440 G A SRCAP Missense_Mutation p.M849I 0.21 unknown(0) TCGA-DM-A1D7-01 16 3072907 3072907 G C HCFC1R1 Missense_Mutation p.P125R 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.49) TCGA-DM-A1D7-01 16 58312467 58312467 G A CCDC113 Missense_Mutation p.V325I 0.20 tolerated(0.06) benign(0.127) TCGA-DM-A1D7-01 16 66646667 66646667 C A CMTM3 3'UTR 0.44 TCGA-DM-A1D7-01 16 67036 67036 G T WASH4P Silent p.V200V 0.11 TCGA-DM-A1D7-01 16 84256268 84256268 C T KCNG4 Missense_Mutation p.G372D 0.26 deleterious(0) probably_damaging(0.972) TCGA-DM-A1D7-01 17 11806090 11806090 G T DNAH9 Missense_Mutation p.A3821S 0.46 benign(0.126) TCGA-DM-A1D7-01 17 12639488 12639488 G A MYOCD Silent p.V142V 0.46 TCGA-DM-A1D7-01 17 39637030 39637030 C T KRT35 Missense_Mutation p.R107H 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-DM-A1D7-01 17 51902440 51902440 C T KIF2B 3'UTR 0.38 TCGA-DM-A1D7-01 17 62793482 62793482 C A PLEKHM1P RNA 0.23 TCGA-DM-A1D7-01 17 67148316 67148316 C A ABCA10 Missense_Mutation p.G1422V 0.17 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D7-01 17 68171395 68171395 T C KCNJ2 Missense_Mutation p.I72T 0.06 deleterious(0) possibly_damaging(0.891) TCGA-DM-A1D7-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.57 deleterious(0) probably_damaging(1) TCGA-DM-A1D7-01 17 80391639 80391639 A G HEXDC Missense_Mutation p.I130V 0.32 tolerated(0.2) benign(0.076) TCGA-DM-A1D7-01 18 43462237 43462237 A C EPG5 Splice_Site p.X1840_splice 0.41 TCGA-DM-A1D7-01 18 45368252 45368252 G C SMAD2 Missense_Mutation p.D450E 0.09 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D7-01 18 70532452 70532452 T C NETO1 Missense_Mutation p.H18R 0.41 tolerated_low_confidence(0.19) benign(0.045) TCGA-DM-A1D7-01 19 110935 110935 C T OR4F17 Missense_Mutation p.S86F 0.23 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D7-01 19 16512990 16512990 A G EPS15L1 Intron 0.18 TCGA-DM-A1D7-01 19 17396515 17396515 G C ANKLE1 Missense_Mutation p.R521P 0.25 deleterious(0.01) possibly_damaging(0.571) TCGA-DM-A1D7-01 19 23414069 23414069 T A ZNF724P Silent p.P75P 0.45 TCGA-DM-A1D7-01 19 30205857 30205857 A C C19orf12 5'UTR 0.27 TCGA-DM-A1D7-01 19 40370259 40370259 A C FCGBP Missense_Mutation p.V4136G 0.10 possibly_damaging(0.637) TCGA-DM-A1D7-01 19 408398 408398 G T C2CD4C 5'UTR 0.15 TCGA-DM-A1D7-01 19 42563597 42563597 C A GRIK5 Silent p.R197R 0.43 TCGA-DM-A1D7-01 19 45997986 45997986 C T RTN2 Silent p.P119P 0.50 TCGA-DM-A1D7-01 19 46443237 46443237 G A NOVA2 Missense_Mutation p.R455W 0.13 deleterious(0) probably_damaging(1) TCGA-DM-A1D7-01 19 46916214 46916214 G T CCDC8 5'UTR 0.15 TCGA-DM-A1D7-01 19 54313158 54313158 C T NLRP12 Silent p.P585P 0.27 TCGA-DM-A1D7-01 19 56006060 56006060 T C SSC5D Missense_Mutation p.S433P 0.08 benign(0.002) TCGA-DM-A1D7-01 19 746711 746711 C G PALM Missense_Mutation p.A354G 0.31 tolerated(0.18) benign(0.008) TCGA-DM-A1D7-01 1 107601782 107601782 G C PRMT6 3'UTR 0.11 TCGA-DM-A1D7-01 1 11835615 11835615 G A C1orf167 Silent p.R728R 0.30 TCGA-DM-A1D7-01 1 152285018 152285018 G C FLG Missense_Mutation p.R782G 0.30 possibly_damaging(0.801) TCGA-DM-A1D7-01 1 159683618 159683618 G A CRP Silent p.I124I 0.22 TCGA-DM-A1D7-01 1 176564444 176564444 C T PAPPA2 Silent p.S568S 0.24 TCGA-DM-A1D7-01 1 178834375 178834375 G A ANGPTL1 Silent p.Y179Y 0.39 TCGA-DM-A1D7-01 1 197643249 197643249 C T DENND1B Splice_Site p.X59_splice 0.18 TCGA-DM-A1D7-01 1 201182028 201182028 G A IGFN1 Silent p.G2669G 0.41 TCGA-DM-A1D7-01 1 21041998 21041998 G A KIF17 Silent p.F122F 0.35 TCGA-DM-A1D7-01 1 228210370 228210370 C T WNT3A Missense_Mutation p.S25L 0.26 tolerated(0.16) benign(0.109) TCGA-DM-A1D7-01 1 228482543 228482543 G A OBSCN Missense_Mutation p.V4249M 0.37 benign(0.003) TCGA-DM-A1D7-01 1 237872343 237872343 G T RYR2 Missense_Mutation p.A3363S 0.29 benign(0.084) TCGA-DM-A1D7-01 1 248367073 248367073 G A OR2M3 Missense_Mutation p.R235H 0.37 tolerated(0.34) benign(0.002) TCGA-DM-A1D7-01 1 248487299 248487299 T C OR2M7 Missense_Mutation p.D191G 0.20 deleterious(0) possibly_damaging(0.904) TCGA-DM-A1D7-01 1 52704916 52704916 T C ZFYVE9 Silent p.N609N 0.26 TCGA-DM-A1D7-01 1 94668170 94668170 C T ARHGAP29 Missense_Mutation p.G358D 0.14 deleterious(0) benign(0.282) TCGA-DM-A1D7-01 20 44472254 44472254 G A ACOT8 Silent p.F251F 0.07 TCGA-DM-A1D7-01 20 45130354 45130354 T C ZNF334 Missense_Mutation p.R542G 0.08 deleterious(0) benign(0.326) TCGA-DM-A1D7-01 20 47864562 47864562 G A ZNFX1 Silent p.L1667L 0.22 TCGA-DM-A1D7-01 21 33949152 33949152 G A TCP10L Missense_Mutation p.R194C 0.34 tolerated(0.19) benign(0.007) TCGA-DM-A1D7-01 22 44645458 44645458 G A KIAA1644 3'UTR 0.19 TCGA-DM-A1D7-01 22 51176735 51176735 G A ACR Silent p.T24T 0.28 TCGA-DM-A1D7-01 2 10580827 10580828 - T ODC1 3'UTR 0.32 TCGA-DM-A1D7-01 2 112896294 112896294 C A FBLN7 Missense_Mutation p.P21Q 0.27 tolerated(0.59) benign(0.002) TCGA-DM-A1D7-01 2 116520160 116520160 A T DPP10 Missense_Mutation p.T367S 0.36 tolerated(0.46) benign(0.004) TCGA-DM-A1D7-01 2 152548637 152548637 T A NEB Missense_Mutation p.Y681F 0.29 probably_damaging(0.999) TCGA-DM-A1D7-01 2 179472623 179472623 C T TTN Missense_Mutation p.V17631I 0.06 TCGA-DM-A1D7-01 2 179596974 179596974 T G TTN Missense_Mutation p.K5574N 0.14 TCGA-DM-A1D7-01 2 198262751 198262751 C T SF3B1 Missense_Mutation p.R1075K 0.36 tolerated(0.07) benign(0.348) TCGA-DM-A1D7-01 2 204034491 204034491 C A NBEAL1 Silent p.R1978R 0.30 TCGA-DM-A1D7-01 2 217303199 217303199 G A SMARCAL1 Silent p.P567P 0.41 TCGA-DM-A1D7-01 2 218677963 218677963 C T TNS1 Silent p.K1539K 0.35 TCGA-DM-A1D7-01 2 228882755 228882755 A - SPHKAP Frame_Shift_Del p.S939Pfs*31 0.08 TCGA-DM-A1D7-01 2 26178465 26178465 C A KIF3C Missense_Mutation p.G572V 0.29 benign(0.082) TCGA-DM-A1D7-01 2 26204141 26204141 A G KIF3C Missense_Mutation p.S216P 0.09 probably_damaging(0.999) TCGA-DM-A1D7-01 2 27360321 27360321 G A C2orf53 Missense_Mutation p.R293W 0.24 deleterious(0) probably_damaging(0.978) TCGA-DM-A1D7-01 2 29445471 29445471 C T ALK Missense_Mutation p.G1121D 0.23 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D7-01 2 37494630 37494630 C A PRKD3 Missense_Mutation p.K609N 0.34 deleterious(0) probably_damaging(1) TCGA-DM-A1D7-01 2 44065791 44065791 C T ABCG5 Missense_Mutation p.G10R 0.25 tolerated_low_confidence(0.53) benign(0.001) TCGA-DM-A1D7-01 2 5833151 5833151 C T SOX11 Missense_Mutation p.R100W 0.10 deleterious(0) probably_damaging(0.996) TCGA-DM-A1D7-01 2 61441606 61441606 G C USP34 Missense_Mutation p.S2757R 0.22 deleterious(0.01) possibly_damaging(0.806) TCGA-DM-A1D7-01 2 80874973 80874973 A T CTNNA2 Missense_Mutation p.E898D 0.16 deleterious(0.03) benign(0.105) TCGA-DM-A1D7-01 2 85628932 85628932 C A CAPG Missense_Mutation p.V58F 0.13 tolerated(0.72) benign(0) TCGA-DM-A1D7-01 2 95539250 95539250 C T TEKT4 Intron 0.18 TCGA-DM-A1D7-01 2 97527533 97527533 G A SEMA4C Silent p.D514D 0.31 TCGA-DM-A1D7-01 3 112666767 112666767 C T CD200R1 Silent p.A24A 0.41 TCGA-DM-A1D7-01 3 130283982 130283982 G T COL6A6 Missense_Mutation p.G269V 0.07 deleterious(0) possibly_damaging(0.886) TCGA-DM-A1D7-01 3 142521187 142521187 G A TRPC1 Splice_Site p.X586_splice 0.29 TCGA-DM-A1D7-01 3 161221572 161221572 C T OTOL1 Nonsense_Mutation p.Q426* 0.28 TCGA-DM-A1D7-01 3 192517420 192517420 G A MB21D2 Silent p.D77D 0.10 TCGA-DM-A1D7-01 3 195447906 195447906 C T MUC20 Missense_Mutation p.P10S 0.39 deleterious_low_confidence(0.04) probably_damaging(0.909) TCGA-DM-A1D7-01 3 48461247 48461247 C A PLXNB1 Silent p.L816L 0.42 TCGA-DM-A1D7-01 3 89448561 89448561 A T EPHA3 Missense_Mutation p.I509F 0.18 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D7-01 3 97851850 97851850 G A OR5H1 Silent p.S103S 0.35 TCGA-DM-A1D7-01 4 104098114 104098114 T G CENPE Silent p.T444T 0.22 TCGA-DM-A1D7-01 4 111397883 111397883 C T ENPEP Missense_Mutation p.H105Y 0.35 tolerated(0.73) benign(0.317) TCGA-DM-A1D7-01 4 114458505 114458505 G A CAMK2D Missense_Mutation p.A170V 0.35 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-DM-A1D7-01 4 154525111 154525111 G A KIAA0922 Missense_Mutation p.V983M 0.24 deleterious(0.01) possibly_damaging(0.819) TCGA-DM-A1D7-01 4 155158065 155158065 C T DCHS2 Missense_Mutation p.R2125H 0.13 tolerated(0.7) benign(0.003) TCGA-DM-A1D7-01 4 1808030 1808030 G A FGFR3 Missense_Mutation p.R671Q 0.36 deleterious(0.01) benign(0.14) TCGA-DM-A1D7-01 4 183721102 183721102 C T TENM3 Silent p.S2566S 0.50 TCGA-DM-A1D7-01 4 2916685 2916685 C A ADD1 Silent p.G591G 0.12 TCGA-DM-A1D7-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.32 TCGA-DM-A1D7-01 5 112176028 112176029 - A APC Frame_Shift_Ins p.I1580Nfs*11 0.21 TCGA-DM-A1D7-01 5 112478968 112478968 G A MCC Silent p.S277S 0.07 TCGA-DM-A1D7-01 5 122522947 122522947 C T PRDM6 3'UTR 0.09 TCGA-DM-A1D7-01 5 134332046 134332046 C T CATSPER3 Silent p.N112N 0.34 TCGA-DM-A1D7-01 5 134343648 134343648 C T CATSPER3 Missense_Mutation p.T165M 0.38 deleterious(0.03) possibly_damaging(0.568) TCGA-DM-A1D7-01 5 140209035 140209035 G A PCDHA6 Silent p.P453P 0.22 TCGA-DM-A1D7-01 5 140263034 140263034 C A PCDHA13 Missense_Mutation p.P394H 0.46 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DM-A1D7-01 5 140743962 140743962 C T PCDHGA5 Missense_Mutation p.T22M 0.43 tolerated_low_confidence(0.18) benign(0.028) TCGA-DM-A1D7-01 5 145862239 145862239 C A TCERG1 Silent p.V657V 0.06 TCGA-DM-A1D7-01 5 150678187 150678187 C A SLC36A3 Silent p.G62G 0.17 TCGA-DM-A1D7-01 5 153175112 153175112 G A GRIA1 Intron 0.21 TCGA-DM-A1D7-01 5 154394186 154394186 G A KIF4B Missense_Mutation p.R256H 0.32 deleterious(0) probably_damaging(0.982) TCGA-DM-A1D7-01 5 177175650 177175650 C T FAM153A 5'UTR 0.16 TCGA-DM-A1D7-01 5 19473719 19473719 G A CDH18 Silent p.G663G 0.35 TCGA-DM-A1D7-01 5 24487795 24487795 C G CDH10 Missense_Mutation p.G782R 0.20 tolerated(0.43) possibly_damaging(0.874) TCGA-DM-A1D7-01 6 105405005 105405005 C T LIN28B 5'UTR 0.29 TCGA-DM-A1D7-01 6 155764447 155764447 G T NOX3 Missense_Mutation p.P149H 0.24 tolerated(0.08) probably_damaging(0.941) TCGA-DM-A1D7-01 6 31322933 31322933 C T HLA-B Silent p.V321V 0.15 TCGA-DM-A1D7-01 6 36076365 36076365 G A MAPK14 3'UTR 0.46 TCGA-DM-A1D7-01 6 53517048 53517048 T C KLHL31 Missense_Mutation p.N418S 0.09 tolerated(0.37) benign(0.063) TCGA-DM-A1D7-01 6 56918676 56918676 A T KIAA1586 Missense_Mutation p.K460M 0.15 deleterious(0.01) benign(0.134) TCGA-DM-A1D7-01 7 121678916 121678916 G C PTPRZ1 Missense_Mutation p.M1825I 0.26 deleterious(0) possibly_damaging(0.789) TCGA-DM-A1D7-01 7 140481411 140481411 C A BRAF Missense_Mutation p.G466V 0.45 deleterious(0) probably_damaging(0.936) TCGA-DM-A1D7-01 7 144062381 144062381 G A ARHGEF5 Silent p.G873G 0.04 TCGA-DM-A1D7-01 7 26404099 26404099 C A SNX10 Intron 0.16 TCGA-DM-A1D7-01 7 43508615 43508615 C T HECW1 Missense_Mutation p.R1004W 0.32 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D7-01 7 82581251 82581252 - A PCLO Frame_Shift_Ins p.Y3007Lfs*2 0.21 TCGA-DM-A1D7-01 8 104778545 104778545 C T RIMS2 Nonsense_Mutation p.Q160* 0.33 TCGA-DM-A1D7-01 8 10584020 10584020 C T SOX7 Missense_Mutation p.G184D 0.42 deleterious(0.01) possibly_damaging(0.864) TCGA-DM-A1D7-01 8 145741708 145741708 G A RECQL4 Silent p.N265N 0.30 TCGA-DM-A1D7-01 8 36642116 36642116 T A KCNU1 Missense_Mutation p.I63N 0.32 tolerated(0.5) benign(0.383) TCGA-DM-A1D7-01 8 43197411 43197411 C A POTEA RNA 0.26 TCGA-DM-A1D7-01 8 49988002 49988002 G A C8orf22 3'UTR 0.40 TCGA-DM-A1D7-01 8 55533570 55533570 C T RP1 Missense_Mutation p.T15M 0.27 deleterious(0) possibly_damaging(0.742) TCGA-DM-A1D7-01 8 61654492 61654492 G A CHD7 Silent p.P167P 0.55 TCGA-DM-A1D7-01 8 86572356 86572356 C G REXO1L1P 3'UTR 0.14 TCGA-DM-A1D7-01 8 90802509 90802509 C T RIPK2 Silent p.I496I 0.18 TCGA-DM-A1D7-01 8 99440500 99440500 T C KCNS2 Missense_Mutation p.V98A 0.09 tolerated(0.45) benign(0.376) TCGA-DM-A1D7-01 9 116346364 116346364 G T RGS3 Missense_Mutation p.G891V 0.19 tolerated(0.06) benign(0.01) TCGA-DM-A1D7-01 9 121929372 121929372 T G BRINP1 Missense_Mutation p.K759T 0.14 deleterious(0) probably_damaging(0.932) TCGA-DM-A1D7-01 9 139906576 139906576 C A ABCA2 Missense_Mutation p.A1780S 0.55 tolerated(0.45) possibly_damaging(0.851) TCGA-DM-A1D7-01 9 16419000 16419000 G A BNC2 Missense_Mutation p.T1096I 0.15 deleterious(0.02) benign(0.076) TCGA-DM-A1D7-01 9 19786209 19786209 A T SLC24A2 Missense_Mutation p.V219D 0.31 deleterious(0) probably_damaging(1) TCGA-DM-A1D7-01 9 82189788 82189788 T G TLE4 Missense_Mutation p.S48R 0.31 deleterious(0) benign(0.068) TCGA-DM-A1D7-01 X 108868049 108868049 C G KCNE1L Missense_Mutation p.M67I 0.33 deleterious(0.01) probably_damaging(0.969) TCGA-DM-A1D7-01 X 119388839 119388839 G T ZBTB33 Silent p.P523P 0.73 TCGA-DM-A1D7-01 X 12734222 12734222 C T FRMPD4 Silent p.G548G 0.11 TCGA-DM-A1D7-01 X 13061926 13061926 C A FAM9C 5'UTR 0.77 TCGA-DM-A1D7-01 X 155012095 155012095 A C SPRY3 3'UTR 0.38 TCGA-DM-A1D7-01 X 1714416 1714416 C T AKAP17A Missense_Mutation p.A301V 0.06 tolerated(0.22) unknown(0) TCGA-DM-A1D7-01 X 19983234 19983234 G T CXorf23 Missense_Mutation p.P401H 0.67 tolerated(0.52) benign(0.047) TCGA-DM-A1D7-01 X 64949377 64949377 C T MSN Silent p.S90S 0.60 TCGA-DM-A1D8-01 10 104173578 104173578 T C PSD Missense_Mutation p.S501G 0.45 deleterious(0.04) possibly_damaging(0.811) TCGA-DM-A1D8-01 10 112362976 112362976 T G SMC3 Missense_Mutation p.F1170L 0.11 deleterious(0) probably_damaging(0.98) TCGA-DM-A1D8-01 10 112362985 112362985 T C SMC3 Silent p.T1173T 0.12 TCGA-DM-A1D8-01 10 135367661 135367661 C A SYCE1 3'Flank 0.37 TCGA-DM-A1D8-01 10 15688847 15688847 T A ITGA8 Missense_Mutation p.N402I 0.38 deleterious(0) possibly_damaging(0.905) TCGA-DM-A1D8-01 10 26434409 26434409 C A MYO3A Missense_Mutation p.F817L 0.07 deleterious(0.03) possibly_damaging(0.627) TCGA-DM-A1D8-01 10 35477131 35477131 C T CREM Missense_Mutation p.A138V 0.19 tolerated(0.07) possibly_damaging(0.511) TCGA-DM-A1D8-01 10 49482636 49482636 G A FRMPD2 5'UTR 0.54 TCGA-DM-A1D8-01 10 50916679 50916679 T C C10orf53 3'UTR 0.26 TCGA-DM-A1D8-01 10 73765508 73765508 C A CHST3 5'UTR 0.44 TCGA-DM-A1D8-01 10 83635253 83635253 C T NRG3 Missense_Mutation p.R53C 0.12 deleterious(0) possibly_damaging(0.832) TCGA-DM-A1D8-01 10 99133604 99133604 C T RRP12 Missense_Mutation p.D616N 0.29 tolerated(0.09) benign(0.052) TCGA-DM-A1D8-01 11 105845210 105845210 G A GRIA4 Intron 0.15 TCGA-DM-A1D8-01 11 124310437 124310437 A C OR8B8 Missense_Mutation p.L182R 0.18 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-DM-A1D8-01 11 126870491 126870491 G A KIRREL3 5'UTR 0.23 TCGA-DM-A1D8-01 11 129772230 129772230 T A PRDM10 Missense_Mutation p.E1154V 0.12 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-DM-A1D8-01 11 132307162 132307162 G T OPCML Missense_Mutation p.N206K 0.07 deleterious(0) probably_damaging(1) TCGA-DM-A1D8-01 11 133792539 133792539 C A IGSF9B Missense_Mutation p.A736S 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-DM-A1D8-01 11 18110984 18110984 C A SAAL1 Missense_Mutation p.W221C 0.43 deleterious(0) probably_damaging(0.994) TCGA-DM-A1D8-01 11 55339863 55339863 A C OR4C16 Missense_Mutation p.K87T 0.23 deleterious(0.03) benign(0.003) TCGA-DM-A1D8-01 11 6261855 6261855 G A CNGA4 Silent p.A277A 0.24 TCGA-DM-A1D8-01 11 63137373 63137373 T C SLC22A9 5'UTR 0.17 TCGA-DM-A1D8-01 11 68338543 68338543 T A PPP6R3 Silent p.L438L 0.24 TCGA-DM-A1D8-01 11 89911159 89911159 G T NAALAD2 Missense_Mutation p.V578L 0.26 deleterious(0.01) benign(0) TCGA-DM-A1D8-01 12 113826473 113826473 C T PLBD2 3'UTR 0.41 TCGA-DM-A1D8-01 12 117977576 117977576 G T KSR2 Silent p.P545P 0.30 TCGA-DM-A1D8-01 12 123187000 123187000 A G HCAR2 Silent p.F277F 0.13 TCGA-DM-A1D8-01 12 123200454 123200454 A G HCAR3 Silent p.F277F 0.17 TCGA-DM-A1D8-01 12 123647639 123647639 C G MPHOSPH9 Missense_Mutation p.S832T 0.36 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D8-01 12 132475957 132475957 G C EP400 Missense_Mutation p.E879Q 0.32 unknown(0) TCGA-DM-A1D8-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.47 deleterious(0.04) possibly_damaging(0.506) TCGA-DM-A1D8-01 12 44926378 44926378 C A NELL2 Missense_Mutation p.G647V 0.10 deleterious(0) probably_damaging(0.995) TCGA-DM-A1D8-01 12 49228189 49228189 C A DDX23 Missense_Mutation p.G492W 0.40 deleterious(0) probably_damaging(0.989) TCGA-DM-A1D8-01 12 60173492 60173492 G T SLC16A7 3'UTR 0.29 TCGA-DM-A1D8-01 12 67706438 67706438 G A CAND1 Missense_Mutation p.R1174Q 0.43 deleterious(0) probably_damaging(1) TCGA-DM-A1D8-01 12 69645062 69645062 G A CPSF6 Missense_Mutation p.V72I 0.31 tolerated(0.87) unknown(0) TCGA-DM-A1D8-01 13 37441511 37441511 G T SMAD9 Missense_Mutation p.P227Q 0.27 deleterious(0.02) benign(0.361) TCGA-DM-A1D8-01 13 61988012 61988012 C T PCDH20 Missense_Mutation p.E74K 0.44 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D8-01 13 84456334 84456334 G A SLITRK1 5'UTR 0.47 TCGA-DM-A1D8-01 14 101348538 101348538 G A RTL1 Missense_Mutation p.A863V 0.07 tolerated(0.1) benign(0.081) TCGA-DM-A1D8-01 14 106208714 106208714 A T IGHG1 Missense_Mutation p.S102T 0.22 tolerated(0.63) benign(0) TCGA-DM-A1D8-01 14 24884345 24884345 G T NYNRIN Missense_Mutation p.W1130C 0.79 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D8-01 14 77951087 77951087 C T ISM2 Missense_Mutation p.R106Q 0.56 tolerated_low_confidence(0.37) benign(0.103) TCGA-DM-A1D8-01 14 96953256 96953256 A G AK7 Missense_Mutation p.K666E 0.08 tolerated(0.06) possibly_damaging(0.718) TCGA-DM-A1D8-01 15 24922855 24922855 C T NPAP1 Missense_Mutation p.P614L 0.78 deleterious(0.01) benign(0.132) TCGA-DM-A1D8-01 15 28499581 28499581 C T HERC2 Silent p.R985R 0.10 TCGA-DM-A1D8-01 15 29092235 29092235 G A GOLGA6L7P RNA 0.82 TCGA-DM-A1D8-01 15 43661795 43661795 G A ZSCAN29 Missense_Mutation p.S106L 0.13 tolerated(0.21) possibly_damaging(0.517) TCGA-DM-A1D8-01 15 48494721 48494721 A C CTXN2 3'UTR 0.35 TCGA-DM-A1D8-01 15 54307678 54307678 A G UNC13C Missense_Mutation p.K860E 0.40 tolerated_low_confidence(0.05) benign(0.123) TCGA-DM-A1D8-01 15 73996759 73996759 C T CD276 Silent p.L439L 0.67 TCGA-DM-A1D8-01 15 74425777 74425777 C G ISLR2 Missense_Mutation p.L228V 0.44 tolerated(0.26) probably_damaging(0.978) TCGA-DM-A1D8-01 15 77769900 77769900 G C HMG20A Missense_Mutation p.E207Q 0.81 tolerated(0.42) benign(0.048) TCGA-DM-A1D8-01 16 1292372 1292372 C G TPSAB1 3'UTR 0.19 TCGA-DM-A1D8-01 16 15188142 15188142 C T RRN3 5'UTR 0.56 TCGA-DM-A1D8-01 16 53737963 53737963 T A FTO 5'UTR 0.43 TCGA-DM-A1D8-01 16 66984 66984 C A WASH4P Missense_Mutation p.A218S 0.07 tolerated(0.47) benign(0.021) TCGA-DM-A1D8-01 16 81145825 81145825 G A PKD1L2 RNA 0.13 TCGA-DM-A1D8-01 16 88052186 88052186 C T BANP Missense_Mutation p.R262C 0.62 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D8-01 16 90160965 90160965 C T TUBB8P7 Intron 0.11 TCGA-DM-A1D8-01 17 18707459 18707459 T A TVP23B Silent p.V157V 0.35 TCGA-DM-A1D8-01 17 20799377 20799377 G T CCDC144NL 5'UTR 0.50 TCGA-DM-A1D8-01 17 4575896 4575896 G A PELP1 Missense_Mutation p.P797L 0.89 unknown(0) TCGA-DM-A1D8-01 17 48172843 48172843 G A PDK2 Missense_Mutation p.G15E 0.79 tolerated(0.14) benign(0.199) TCGA-DM-A1D8-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.82 tolerated(0.11) benign(0.308) TCGA-DM-A1D8-01 17 7612022 7612022 C A EFNB3 Missense_Mutation p.A193D 0.75 tolerated(0.6) benign(0.031) TCGA-DM-A1D8-01 17 9501560 9501560 T G WDR16 Missense_Mutation p.I182M 0.15 tolerated(0.09) benign(0.206) TCGA-DM-A1D8-01 18 43405643 43405643 G T SIGLEC15 5'UTR 0.65 TCGA-DM-A1D8-01 18 48591930 48591930 G C SMAD4 Missense_Mutation p.G365R 0.65 deleterious(0) probably_damaging(1) TCGA-DM-A1D8-01 19 11101853 11101853 C T SMARCA4 Missense_Mutation p.R425W 0.34 probably_damaging(0.993) TCGA-DM-A1D8-01 19 12792464 12792464 A G DHPS Silent p.G39G 0.30 TCGA-DM-A1D8-01 19 16664341 16664341 C T SLC35E1 3'UTR 0.32 TCGA-DM-A1D8-01 19 1785704 1785704 C T ATP8B3 Missense_Mutation p.V1053M 0.67 deleterious(0.03) benign(0.298) TCGA-DM-A1D8-01 19 22272324 22272324 C A ZNF257 3'UTR 0.63 TCGA-DM-A1D8-01 19 48248839 48248839 T G GLTSCR2 Missense_Mutation p.V8G 0.47 tolerated_low_confidence(1) benign(0) TCGA-DM-A1D8-01 19 50826335 50826335 C A KCNC3 Missense_Mutation p.R625S 0.73 tolerated_low_confidence(0.25) benign(0.227) TCGA-DM-A1D8-01 19 53856233 53856233 C A ZNF845 Missense_Mutation p.H769N 0.29 deleterious(0) benign(0.214) TCGA-DM-A1D8-01 19 55020296 55020296 G T LAIR2 Splice_Site p.X139_splice 0.10 TCGA-DM-A1D8-01 19 58084470 58084470 T A ZNF416 Missense_Mutation p.R268W 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-DM-A1D8-01 19 58152154 58152154 C A ZNF211 Silent p.S165S 0.54 TCGA-DM-A1D8-01 1 104114843 104114843 T A AMY2B Missense_Mutation p.F94I 0.07 deleterious(0) possibly_damaging(0.742) TCGA-DM-A1D8-01 1 112042811 112042811 C T ADORA3 Intron 0.51 TCGA-DM-A1D8-01 1 115167897 115167897 A G DENND2C Missense_Mutation p.Y237H 0.29 tolerated(0.54) benign(0.001) TCGA-DM-A1D8-01 1 11562760 11562760 C T PTCHD2 Silent p.H374H 0.27 TCGA-DM-A1D8-01 1 117634012 117634012 C A TTF2 Missense_Mutation p.P884H 0.29 tolerated(0.06) benign(0.111) TCGA-DM-A1D8-01 1 152749166 152749166 G A LCE1F Missense_Mutation p.G107R 0.40 deleterious_low_confidence(0.03) unknown(0) TCGA-DM-A1D8-01 1 152883559 152883559 A G IVL Missense_Mutation p.Q429R 0.55 deleterious_low_confidence(0.01) probably_damaging(0.951) TCGA-DM-A1D8-01 1 165532857 165532857 C A LRRC52 Silent p.I246I 0.20 TCGA-DM-A1D8-01 1 182873421 182873421 C A SHCBP1L Missense_Mutation p.G494V 0.57 deleterious(0) probably_damaging(1) TCGA-DM-A1D8-01 1 20669788 20669788 A G VWA5B1 Missense_Mutation p.D843G 0.27 tolerated(0.14) benign(0.002) TCGA-DM-A1D8-01 1 216495287 216495287 C T USH2A Missense_Mutation p.D528N 0.50 possibly_damaging(0.573) TCGA-DM-A1D8-01 1 237729972 237729972 C T RYR2 Missense_Mutation p.T1107M 0.24 benign(0.193) TCGA-DM-A1D8-01 1 26348968 26348968 G C EXTL1 5'UTR 0.29 TCGA-DM-A1D8-01 1 33116856 33116856 C T RBBP4 5'UTR 0.67 TCGA-DM-A1D8-01 1 36639029 36639029 G A MAP7D1 Missense_Mutation p.R230H 0.31 probably_damaging(0.995) TCGA-DM-A1D8-01 1 41303365 41303365 G A KCNQ4 Missense_Mutation p.G592R 0.38 tolerated(0.48) possibly_damaging(0.464) TCGA-DM-A1D8-01 1 45508928 45508928 T C ZSWIM5 Silent p.R524R 0.08 TCGA-DM-A1D8-01 1 62257090 62257090 T C INADL Missense_Mutation p.I380T 0.49 deleterious(0) probably_damaging(0.909) TCGA-DM-A1D8-01 1 68960260 68960260 A G DEPDC1 Missense_Mutation p.L56P 0.22 deleterious(0) probably_damaging(0.978) TCGA-DM-A1D8-01 1 70385048 70385048 C T LRRC7 Intron 0.27 TCGA-DM-A1D8-01 20 10620282 10620282 G A JAG1 Missense_Mutation p.P1174L 0.19 tolerated(0.21) possibly_damaging(0.596) TCGA-DM-A1D8-01 20 20007548 20007548 A C NAA20 Missense_Mutation p.E97A 0.40 deleterious(0.02) possibly_damaging(0.77) TCGA-DM-A1D8-01 20 2375972 2375972 C A TGM6 Missense_Mutation p.P105H 0.14 tolerated(0.05) probably_damaging(0.93) TCGA-DM-A1D8-01 20 33834777 33834777 T A MMP24 Missense_Mutation p.D127E 0.52 deleterious(0) probably_damaging(0.994) TCGA-DM-A1D8-01 20 3678583 3678583 G A SIGLEC1 Missense_Mutation p.R662C 0.51 deleterious(0) probably_damaging(0.992) TCGA-DM-A1D8-01 20 48129705 48129705 C T PTGIS Missense_Mutation p.R373Q 0.17 tolerated(0.53) benign(0.049) TCGA-DM-A1D8-01 20 55206350 55206350 C G TFAP2C Silent p.L46L 0.48 TCGA-DM-A1D8-01 20 55206379 55206379 C T TFAP2C Missense_Mutation p.P56L 0.46 deleterious(0.02) benign(0.004) TCGA-DM-A1D8-01 20 61391525 61391525 G A NTSR1 Missense_Mutation p.R388H 0.52 tolerated(0.15) benign(0.006) TCGA-DM-A1D8-01 20 61952381 61952381 G T COL20A1 Missense_Mutation p.C1057F 0.53 deleterious(0) possibly_damaging(0.885) TCGA-DM-A1D8-01 21 41561122 41561122 C T DSCAM Silent p.T800T 0.30 TCGA-DM-A1D8-01 22 18909908 18909908 C T PRODH Missense_Mutation p.A287T 0.67 tolerated(0.3) benign(0.013) TCGA-DM-A1D8-01 2 101188061 101188061 C G PDCL3 Silent p.L126L 0.40 TCGA-DM-A1D8-01 2 102641017 102641017 T A IL1R2 Nonsense_Mutation p.C258* 0.25 TCGA-DM-A1D8-01 2 119914435 119914435 G A C1QL2 Silent p.H269H 0.14 TCGA-DM-A1D8-01 2 132021655 132021655 T A POTEE Missense_Mutation p.L876Q 0.13 tolerated_low_confidence(0.07) possibly_damaging(0.753) TCGA-DM-A1D8-01 2 145155919 145155919 A C ZEB2 Silent p.T945T 0.27 TCGA-DM-A1D8-01 2 149241323 149241323 G T MBD5 Intron 0.27 TCGA-DM-A1D8-01 2 162849554 162849554 G A DPP4 3'UTR 0.38 TCGA-DM-A1D8-01 2 167129302 167129302 G T SCN9A Missense_Mutation p.N975K 0.27 tolerated(0.06) probably_damaging(0.998) TCGA-DM-A1D8-01 2 179648448 179648448 G A TTN Missense_Mutation p.S947L 0.21 TCGA-DM-A1D8-01 2 179826029 179826029 C A CCDC141 Missense_Mutation p.K236N 0.51 deleterious(0) probably_damaging(0.992) TCGA-DM-A1D8-01 2 207171978 207171978 A T ZDBF2 Missense_Mutation p.N909I 0.52 deleterious(0) probably_damaging(0.924) TCGA-DM-A1D8-01 2 234591248 234591249 - T UGT1A7 Frame_Shift_Ins p.K225Qfs*9 0.31 TCGA-DM-A1D8-01 2 238283188 238283188 C T COL6A3 Silent p.P1182P 0.22 TCGA-DM-A1D8-01 2 242075408 242075408 G A PASK Missense_Mutation p.A395V 0.62 tolerated(0.19) benign(0.014) TCGA-DM-A1D8-01 2 27660137 27660137 G A NRBP1 Silent p.V271V 0.30 TCGA-DM-A1D8-01 2 71797361 71797361 C T DYSF Silent p.N994N 0.46 TCGA-DM-A1D8-01 3 101284167 101284167 G A TRMT10C Missense_Mutation p.R181Q 0.51 tolerated(0.41) benign(0.044) TCGA-DM-A1D8-01 3 138329671 138329671 C T FAIM 5'UTR 0.15 TCGA-DM-A1D8-01 3 170736363 170736363 A T SLC2A2 Missense_Mutation p.F22Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-DM-A1D8-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.49 deleterious(0.04) probably_damaging(0.96) TCGA-DM-A1D8-01 3 180361953 180361953 G A CCDC39 Silent p.I540I 0.54 TCGA-DM-A1D8-01 3 185882758 185882758 C T DGKG Silent p.E715E 0.26 TCGA-DM-A1D8-01 3 35770910 35770910 T C ARPP21 Silent p.P413P 0.39 TCGA-DM-A1D8-01 3 40523736 40523736 G T ZNF619 Missense_Mutation p.G65V 0.24 tolerated(0.16) probably_damaging(0.953) TCGA-DM-A1D8-01 3 42685435 42685435 G A NKTR Missense_Mutation p.R1414Q 0.50 deleterious_low_confidence(0) unknown(0) TCGA-DM-A1D8-01 3 48631083 48631083 G A COL7A1 Missense_Mutation p.R105C 0.28 unknown(0) TCGA-DM-A1D8-01 3 48697409 48697409 C T CELSR3 Missense_Mutation p.V887M 0.21 deleterious(0) probably_damaging(1) TCGA-DM-A1D8-01 3 50655066 50655066 T C MAPKAPK3 Silent p.L24L 0.28 TCGA-DM-A1D8-01 3 62355872 62355872 G A FEZF2 Silent p.C422C 0.10 TCGA-DM-A1D8-01 4 126408525 126408525 C T FAT4 Missense_Mutation p.T4281I 0.26 benign(0.005) TCGA-DM-A1D8-01 4 142640613 142640613 G C IL15 5'UTR 0.59 TCGA-DM-A1D8-01 4 162680665 162680665 G A FSTL5 Missense_Mutation p.L209F 0.09 deleterious(0.01) benign(0.002) TCGA-DM-A1D8-01 4 66467742 66467742 G A EPHA5 Missense_Mutation p.T176I 0.57 deleterious(0) probably_damaging(0.996) TCGA-DM-A1D8-01 4 68267 68267 T C Z95704.1 3'Flank 0.30 TCGA-DM-A1D8-01 4 68928805 68928805 A C TMPRSS11F Intron 0.53 TCGA-DM-A1D8-01 4 83905943 83905943 T G LIN54 Missense_Mutation p.T19P 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DM-A1D8-01 4 95444978 95444978 A C PDLIM5 Missense_Mutation p.Q67P 0.47 deleterious(0) probably_damaging(0.985) TCGA-DM-A1D8-01 5 101593747 101593747 A C SLCO4C1 Silent p.T391T 0.14 TCGA-DM-A1D8-01 5 102342600 102342600 C A PAM Silent p.P633P 0.61 TCGA-DM-A1D8-01 5 10433976 10433976 A G MARCH6 3'UTR 0.36 TCGA-DM-A1D8-01 5 1085434 1085434 G A SLC12A7 Missense_Mutation p.A277V 0.25 deleterious(0) probably_damaging(0.986) TCGA-DM-A1D8-01 5 11111021 11111021 C A CTNND2 Missense_Mutation p.E804D 0.26 tolerated(0.48) benign(0.154) TCGA-DM-A1D8-01 5 111615973 111615973 G T EPB41L4A Silent p.I84I 0.54 TCGA-DM-A1D8-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.19 TCGA-DM-A1D8-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.37 TCGA-DM-A1D8-01 5 121405747 121405747 C T LOX Splice_Site p.X416_splice 0.60 TCGA-DM-A1D8-01 5 137727667 137727672 TTTTTC GTTTTTA KDM3B Frame_Shift_Ins p.D782Efs*11 0.28 TCGA-DM-A1D8-01 5 140559629 140559629 C A PCDHB8 Missense_Mutation p.L672M 0.53 deleterious_low_confidence(0.01) benign(0.346) TCGA-DM-A1D8-01 5 140908028 140908028 G C DIAPH1 Missense_Mutation p.A1047G 0.21 probably_damaging(0.997) TCGA-DM-A1D8-01 5 140953513 140953513 C A DIAPH1 Missense_Mutation p.G635V 0.21 unknown(0) TCGA-DM-A1D8-01 5 145895651 145895651 G C GPR151 Missense_Mutation p.S9C 0.32 tolerated(0.08) possibly_damaging(0.62) TCGA-DM-A1D8-01 5 151775123 151775123 A G NMUR2 Silent p.A278A 0.15 TCGA-DM-A1D8-01 5 16091037 16091037 A G MARCH11 Missense_Mutation p.C283R 0.18 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D8-01 5 176700695 176700695 G C NSD1 Missense_Mutation p.R1844S 0.18 deleterious(0.01) possibly_damaging(0.661) TCGA-DM-A1D8-01 5 177633804 177633804 G A HNRNPAB Silent p.K150K 0.21 TCGA-DM-A1D8-01 5 178506929 178506929 T C ZNF354C Missense_Mutation p.M499T 0.49 tolerated(0.57) benign(0.257) TCGA-DM-A1D8-01 5 178562943 178562943 G T ADAMTS2 Missense_Mutation p.D684E 0.14 deleterious(0.01) probably_damaging(1) TCGA-DM-A1D8-01 5 19473678 19473678 C A CDH18 Missense_Mutation p.R677M 0.40 deleterious(0) possibly_damaging(0.789) TCGA-DM-A1D8-01 5 32087364 32087364 G A PDZD2 Silent p.S1270S 0.42 TCGA-DM-A1D8-01 5 32711887 32711887 C T NPR3 Missense_Mutation p.P2L 0.14 tolerated_low_confidence(0.07) benign(0.016) TCGA-DM-A1D8-01 5 74893864 74893864 A G POLK 3'UTR 0.59 TCGA-DM-A1D8-01 5 93989105 93989105 G T ANKRD32 Missense_Mutation p.R337S 0.19 tolerated(0.1) benign(0.001) TCGA-DM-A1D8-01 6 10907806 10907806 G A SYCP2L Silent p.A236A 0.64 TCGA-DM-A1D8-01 6 127611003 127611003 C T ECHDC1 3'UTR 0.45 TCGA-DM-A1D8-01 6 128297807 128297807 T A PTPRK Missense_Mutation p.T1328S 0.52 tolerated(0.66) probably_damaging(0.979) TCGA-DM-A1D8-01 6 129649445 129649445 G A LAMA2 Missense_Mutation p.R1400Q 0.35 deleterious(0.02) probably_damaging(0.951) TCGA-DM-A1D8-01 6 135778749 135778749 A C AHI1 Missense_Mutation p.L345W 0.61 deleterious(0) probably_damaging(0.997) TCGA-DM-A1D8-01 6 28967772 28967772 G A ZNF311 Silent p.N48N 0.46 TCGA-DM-A1D8-01 6 30166603 30166603 G T TRIM26 Missense_Mutation p.T93N 0.52 tolerated(0.39) benign(0.152) TCGA-DM-A1D8-01 6 46626568 46626568 G A SLC25A27 Intron 0.24 TCGA-DM-A1D8-01 6 51619642 51619642 C G PKHD1 Missense_Mutation p.V2913L 0.28 tolerated(0.63) benign(0.029) TCGA-DM-A1D8-01 6 70049308 70049308 G A BAI3 Missense_Mutation p.R1124H 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A1D8-01 6 70082297 70082297 G T BAI3 Splice_Site p.X1414_splice 0.22 TCGA-DM-A1D8-01 6 73951830 73951830 C A KHDC1 Silent p.L154L 0.51 TCGA-DM-A1D8-01 7 113558764 113558764 C T PPP1R3A Silent p.T96T 0.27 TCGA-DM-A1D8-01 7 142622622 142622622 A G TRPV5 Splice_Site p.X374_splice 0.11 TCGA-DM-A1D8-01 7 143453999 143453999 G T CTAGE6 Silent p.S251S 0.33 TCGA-DM-A1D8-01 7 150171404 150171404 G T GIMAP8 Silent p.L329L 0.41 TCGA-DM-A1D8-01 7 150839679 150839679 G T AGAP3 Missense_Mutation p.G744V 0.50 tolerated(0.11) benign(0.126) TCGA-DM-A1D8-01 7 157370775 157370775 C T PTPRN2 Missense_Mutation p.G852S 0.53 tolerated(0.06) probably_damaging(1) TCGA-DM-A1D8-01 7 36895062 36895062 A T ELMO1 3'UTR 0.14 TCGA-DM-A1D8-01 7 37272770 37272770 G A ELMO1 Missense_Mutation p.T160M 0.24 deleterious(0.04) probably_damaging(0.992) TCGA-DM-A1D8-01 7 44012860 44012860 G A POLR2J4 RNA 0.39 TCGA-DM-A1D8-01 7 70800710 70800710 G A WBSCR17 Missense_Mutation p.R138H 0.38 deleterious(0) benign(0.412) TCGA-DM-A1D8-01 8 116426179 116426179 T C TRPS1 3'UTR 0.28 TCGA-DM-A1D8-01 8 144812652 144812652 G T FAM83H Missense_Mutation p.A34E 0.14 deleterious(0) probably_damaging(0.993) TCGA-DM-A1D8-01 8 22479009 22479009 C T BIN3 Missense_Mutation p.D230N 0.29 tolerated(0.29) benign(0.412) TCGA-DM-A1D8-01 8 32617861 32617861 A C NRG1 Missense_Mutation p.N407T 0.54 tolerated(0.17) benign(0.341) TCGA-DM-A1D8-01 8 41554024 41554024 C T ANK1 Silent p.P980P 0.60 TCGA-DM-A1D8-01 8 62212687 62212687 C T CLVS1 Missense_Mutation p.R101C 0.51 deleterious(0) probably_damaging(0.978) TCGA-DM-A1D8-01 8 72946602 72946602 A C TRPA1 Missense_Mutation p.C856G 0.28 tolerated(0.13) possibly_damaging(0.505) TCGA-DM-A1D8-01 8 86572256 86572256 C A REXO1L1P 3'UTR 0.15 TCGA-DM-A1D8-01 9 114290238 114290238 T C ZNF483 Intron 0.18 TCGA-DM-A1D8-01 9 116151291 116151291 G A ALAD Silent p.A299A 0.40 TCGA-DM-A1D8-01 9 118974110 118974110 C A PAPPA Missense_Mutation p.A606D 0.42 deleterious(0) benign(0.11) TCGA-DM-A1D8-01 9 133779538 133779538 G A FIBCD1 Silent p.D433D 0.45 TCGA-DM-A1D8-01 9 133901837 133901837 G A LAMC3 Missense_Mutation p.R180H 0.28 deleterious(0.04) benign(0.262) TCGA-DM-A1D8-01 9 2161836 2161836 C T SMARCA2 Missense_Mutation p.P1378S 0.37 possibly_damaging(0.483) TCGA-DM-A1D8-01 9 32784603 32784603 C A TMEM215 Missense_Mutation p.T141K 0.43 tolerated_low_confidence(0.29) benign(0.003) TCGA-DM-A1D8-01 9 33944369 33944369 A T UBAP2 Silent p.A513A 0.29 TCGA-DM-A1D8-01 9 3829373 3829373 A C GLIS3 Missense_Mutation p.S865A 0.38 tolerated(0.14) benign(0.142) TCGA-DM-A1D8-01 X 100880275 100880275 T A ARMCX3 Silent p.R102R 0.06 TCGA-DM-A1D8-01 X 100881187 100881187 A T ARMCX3 3'UTR 0.21 TCGA-DM-A1D8-01 X 112022815 112022815 T C AMOT Missense_Mutation p.K856R 0.19 unknown(0) TCGA-DM-A1D8-01 X 117880919 117880919 A T IL13RA1 Missense_Mutation p.K77N 0.19 deleterious(0.05) benign(0.081) TCGA-DM-A1D8-01 X 131513484 131513484 G C MBNL3 3'UTR 0.14 TCGA-DM-A1D8-01 X 13753380 13753380 C T OFD1 Missense_Mutation p.T9I 0.09 deleterious(0.04) benign(0.002) TCGA-DM-A1D8-01 X 13778510 13778510 G A OFD1 Missense_Mutation p.R644H 0.38 tolerated(0.49) benign(0.023) TCGA-DM-A1D8-01 X 14938076 14938076 C A MOSPD2 3'UTR 0.34 TCGA-DM-A1D8-01 X 149638695 149638695 C T MAMLD1 Nonsense_Mutation p.Q259* 0.13 TCGA-DM-A1D8-01 X 30261716 30261716 A C MAGEB4 3'UTR 0.19 TCGA-DM-A1D8-01 X 35938079 35938079 G A CXorf22 Missense_Mutation p.G55R 0.08 deleterious(0.03) probably_damaging(1) TCGA-DM-A1D8-01 X 63411937 63411937 C T AMER1 Nonsense_Mutation p.W410* 0.34 TCGA-DM-A1D8-01 X 65242531 65242531 T G VSIG4 Intron 0.19 TCGA-DM-A1D8-01 X 68382387 68382387 C T PJA1 Missense_Mutation p.R232H 0.37 tolerated(0.55) benign(0.002) TCGA-DM-A1D8-01 X 71360493 71360493 C T NHSL2 Missense_Mutation p.P1032L 0.46 tolerated(0.1) benign(0.003) TCGA-DM-A1D8-01 X 8138018 8138018 G T VCX2 3'UTR 0.13 TCGA-DM-A1D8-01 X 90693305 90693305 C A PABPC5 3'UTR 0.19 TCGA-DM-A1D8-01 X 9859113 9859113 C T SHROOM2 Silent p.S138S 0.34 TCGA-DM-A1D9-01 10 32742297 32742297 A G CCDC7 Missense_Mutation p.Y102C 0.41 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D9-01 10 47158795 47158795 G A ANXA8L1 3'UTR 0.72 TCGA-DM-A1D9-01 10 6261543 6261543 C A PFKFB3 Silent p.I170I 0.39 TCGA-DM-A1D9-01 10 7205864 7205864 G A SFMBT2 Silent p.D851D 0.35 TCGA-DM-A1D9-01 10 93754330 93754330 C G BTAF1 Missense_Mutation p.Q1080E 0.58 tolerated(0.39) possibly_damaging(0.465) TCGA-DM-A1D9-01 10 94835660 94835660 T A CYP26A1 Silent p.T314T 0.70 TCGA-DM-A1D9-01 10 95719915 95719915 G T PIPSL RNA 0.67 TCGA-DM-A1D9-01 11 124971194 124971194 G A TMEM218 Missense_Mutation p.S39F 0.12 tolerated(0.1) probably_damaging(0.974) TCGA-DM-A1D9-01 11 124971195 124971195 A T TMEM218 Missense_Mutation p.S39T 0.13 tolerated(0.22) possibly_damaging(0.743) TCGA-DM-A1D9-01 11 128842075 128842075 T C ARHGAP32 Intron 0.64 TCGA-DM-A1D9-01 11 133790076 133790076 G A IGSF9B Missense_Mutation p.R1182W 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DM-A1D9-01 11 134038036 134038037 - A NCAPD3 Frame_Shift_Ins p.S1143Ffs*5 0.28 TCGA-DM-A1D9-01 11 17448693 17448693 T C ABCC8 Missense_Mutation p.T709A 0.37 deleterious(0) benign(0.253) TCGA-DM-A1D9-01 11 40137304 40137304 C A LRRC4C Missense_Mutation p.G180V 0.43 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D9-01 11 4159452 4159452 A T RRM1 Missense_Mutation p.R740W 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DM-A1D9-01 11 6621803 6621803 C T RRP8 Silent p.L388L 0.44 TCGA-DM-A1D9-01 11 92533101 92533101 C A FAT3 Missense_Mutation p.Q2308K 0.44 benign(0.377) TCGA-DM-A1D9-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.40 deleterious(0.04) possibly_damaging(0.506) TCGA-DM-A1D9-01 12 50472720 50472720 C T ASIC1 Silent p.Y336Y 0.42 TCGA-DM-A1D9-01 12 55615516 55615516 G A OR10A7 Silent p.K236K 0.49 TCGA-DM-A1D9-01 12 60168718 60168719 AG - SLC16A7 Frame_Shift_Del p.E215Rfs*2 0.09 TCGA-DM-A1D9-01 12 81102677 81102677 G A MYF6 Missense_Mutation p.V223M 0.38 deleterious(0) probably_damaging(0.988) TCGA-DM-A1D9-01 13 32911448 32911450 AAT - BRCA2 In_Frame_Del p.N987del 0.12 TCGA-DM-A1D9-01 13 50207394 50207394 C T ARL11 3'UTR 0.31 TCGA-DM-A1D9-01 14 105353414 105353414 G A CEP170B Silent p.P946P 0.30 TCGA-DM-A1D9-01 15 22473190 22473190 G T IGHV4OR15-8 Silent p.G27G 0.26 TCGA-DM-A1D9-01 15 28447612 28447612 G A HERC2 Missense_Mutation p.S2454L 0.31 benign(0.029) TCGA-DM-A1D9-01 15 41853761 41853761 C T TYRO3 Silent p.D111D 0.59 TCGA-DM-A1D9-01 15 53901721 53901721 G C WDR72 Missense_Mutation p.Q981E 0.57 deleterious(0) probably_damaging(0.967) TCGA-DM-A1D9-01 15 64673582 64673582 A G KIAA0101 5'UTR 0.08 TCGA-DM-A1D9-01 15 88669526 88669526 G A NTRK3 Nonsense_Mutation p.R458* 0.72 TCGA-DM-A1D9-01 16 1251958 1251958 G A CACNA1H Missense_Mutation p.R503H 0.50 tolerated(0.11) probably_damaging(0.996) TCGA-DM-A1D9-01 16 15818499 15818499 G A MYH11 Intron 0.35 TCGA-DM-A1D9-01 16 1812705 1812707 AGA - MAPK8IP3 In_Frame_Del p.K569del 0.12 TCGA-DM-A1D9-01 16 23208640 23208640 C A SCNN1G Silent p.S323S 0.26 TCGA-DM-A1D9-01 16 24920271 24920271 G A SLC5A11 Missense_Mutation p.V502M 0.31 tolerated(0.12) benign(0.028) TCGA-DM-A1D9-01 16 30128131 30128131 A T MAPK3 Intron 0.32 TCGA-DM-A1D9-01 16 4562366 4562366 C T CDIP1 3'UTR 0.62 TCGA-DM-A1D9-01 16 55706025 55706025 C T SLC6A2 Silent p.S194S 0.19 TCGA-DM-A1D9-01 16 58071511 58071511 G A MMP15 Missense_Mutation p.E100K 0.31 tolerated(0.28) benign(0.19) TCGA-DM-A1D9-01 16 64984776 64984776 G A CDH11 Silent p.D596D 0.35 TCGA-DM-A1D9-01 16 67978874 67978874 C T SLC12A4 Intron 0.41 TCGA-DM-A1D9-01 16 68267758 68267760 AGA - ESRP2 In_Frame_Del p.F156del 0.21 TCGA-DM-A1D9-01 16 70913228 70913228 A T HYDIN Missense_Mutation p.L3510H 0.29 probably_damaging(0.966) TCGA-DM-A1D9-01 16 89882334 89882334 G A FANCA Missense_Mutation p.A47V 0.32 deleterious(0.04) possibly_damaging(0.483) TCGA-DM-A1D9-01 17 34074205 34074205 G T GAS2L2 Silent p.T305T 0.65 TCGA-DM-A1D9-01 17 61995189 61995189 G A GH1 Silent p.Y129Y 0.82 TCGA-DM-A1D9-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.57 tolerated(0.11) benign(0.308) TCGA-DM-A1D9-01 17 78936325 78936325 G C RPTOR Missense_Mutation p.V1253L 0.65 tolerated(0.74) benign(0.002) TCGA-DM-A1D9-01 18 48603147 48603147 G C SMAD4 Splice_Site p.X483_splice 0.69 TCGA-DM-A1D9-01 19 14037686 14037686 G T CC2D1A Splice_Site p.X709_splice 0.52 TCGA-DM-A1D9-01 19 15366198 15366198 C A BRD4 Nonsense_Mutation p.E653* 0.15 TCGA-DM-A1D9-01 19 17922731 17922731 G A B3GNT3 Missense_Mutation p.E307K 0.30 tolerated(0.12) benign(0.403) TCGA-DM-A1D9-01 19 19162759 19162759 G A ARMC6 Missense_Mutation p.R203H 0.47 deleterious(0.03) benign(0.137) TCGA-DM-A1D9-01 19 23328693 23328693 C A ZNF730 Missense_Mutation p.P283T 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-DM-A1D9-01 19 30020834 30020834 G A VSTM2B Missense_Mutation p.D136N 0.34 deleterious(0) possibly_damaging(0.695) TCGA-DM-A1D9-01 19 36212631 36212633 CCT - KMT2B In_Frame_Del p.L796del 0.17 TCGA-DM-A1D9-01 19 37441606 37441606 C A ZNF568 Silent p.L517L 0.08 TCGA-DM-A1D9-01 19 38954138 38954138 C T RYR1 Missense_Mutation p.R885C 0.31 probably_damaging(0.999) TCGA-DM-A1D9-01 19 39950201 39950201 A T SUPT5H Missense_Mutation p.D176V 0.52 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D9-01 19 49340700 49340700 G A PLEKHA4 Missense_Mutation p.S729L 0.29 deleterious_low_confidence(0) benign(0.344) TCGA-DM-A1D9-01 19 54417766 54417766 G T CACNG7 Missense_Mutation p.G70V 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-DM-A1D9-01 19 55669006 55669006 G A TNNI3 5'UTR 0.26 TCGA-DM-A1D9-01 19 57888634 57888634 A G ZNF547 Missense_Mutation p.K97R 0.43 tolerated(0.39) probably_damaging(0.994) TCGA-DM-A1D9-01 19 8553844 8553844 A T HNRNPM 3'UTR 0.46 TCGA-DM-A1D9-01 1 111703835 111703836 - T CEPT1 Frame_Shift_Ins p.C185Lfs*28 0.38 TCGA-DM-A1D9-01 1 115258747 115258747 C T NRAS Missense_Mutation p.G12D 0.47 deleterious(0) possibly_damaging(0.726) TCGA-DM-A1D9-01 1 152084431 152084431 C T TCHH Missense_Mutation p.R421H 0.12 unknown(0) TCGA-DM-A1D9-01 1 152636630 152636630 C T LCE2D Missense_Mutation p.P17S 0.32 tolerated_low_confidence(0.75) unknown(0) TCGA-DM-A1D9-01 1 156706504 156706504 C T RRNAD1 Silent p.L463L 0.34 TCGA-DM-A1D9-01 1 161748109 161748109 A T ATF6 Missense_Mutation p.Y53F 0.40 tolerated(0.17) benign(0.001) TCGA-DM-A1D9-01 1 1647810 1647810 C A CDK11A Missense_Mutation p.A155S 0.14 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-DM-A1D9-01 1 17570601 17570601 C A PADI1 Missense_Mutation p.L619M 0.38 deleterious(0.01) probably_damaging(1) TCGA-DM-A1D9-01 1 201868809 201868809 A G LMOD1 Silent p.N444N 0.27 TCGA-DM-A1D9-01 1 207975820 207975820 T C C1orf132 RNA 0.40 TCGA-DM-A1D9-01 1 24432461 24432461 G A MYOM3 Missense_Mutation p.T170M 0.39 tolerated(0.08) possibly_damaging(0.893) TCGA-DM-A1D9-01 1 245674413 245674413 G C KIF26B Intron 0.37 TCGA-DM-A1D9-01 1 6530331 6530331 C A PLEKHG5 Missense_Mutation p.G668W 0.42 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D9-01 1 70736578 70736578 C T ANKRD13C Missense_Mutation p.V486I 0.39 tolerated(0.52) benign(0.059) TCGA-DM-A1D9-01 1 75009675 75009675 G A TNNI3K 3'UTR 0.48 TCGA-DM-A1D9-01 20 20350564 20350564 G A INSM1 3'UTR 0.46 TCGA-DM-A1D9-01 20 23965689 23965689 G C GGTLC1 3'Flank 0.43 TCGA-DM-A1D9-01 20 29978354 29978354 G A DEFB119 5'Flank 0.46 TCGA-DM-A1D9-01 20 8131012 8131012 A T PLCB1 Missense_Mutation p.Q57H 0.35 deleterious(0) benign(0.122) TCGA-DM-A1D9-01 21 15481200 15481200 A G LIPI 3'UTR 0.57 TCGA-DM-A1D9-01 21 19632557 19632557 A T CHODL Silent p.T196T 0.49 TCGA-DM-A1D9-01 21 47836551 47836551 C G PCNT Missense_Mutation p.P2240R 0.57 probably_damaging(0.937) TCGA-DM-A1D9-01 22 29695770 29695770 G C EWSR1 Silent p.G625G 0.69 TCGA-DM-A1D9-01 22 46762892 46762892 T A CELSR1 Missense_Mutation p.T2735S 0.57 tolerated(0.22) probably_damaging(0.997) TCGA-DM-A1D9-01 2 10582162 10582162 A G ODC1 Silent p.L297L 0.39 TCGA-DM-A1D9-01 2 110015235 110015235 C T SH3RF3 Missense_Mutation p.R379C 0.44 deleterious(0.02) probably_damaging(0.918) TCGA-DM-A1D9-01 2 110376285 110376285 T A SOWAHC 3'UTR 0.45 TCGA-DM-A1D9-01 2 11751091 11751091 A T GREB1 Missense_Mutation p.I982F 0.41 deleterious(0) probably_damaging(0.986) TCGA-DM-A1D9-01 2 132021619 132021619 C T POTEE Missense_Mutation p.P864L 0.30 deleterious_low_confidence(0) possibly_damaging(0.797) TCGA-DM-A1D9-01 2 197541292 197541292 T G CCDC150 Missense_Mutation p.L426R 0.09 tolerated(0.1) benign(0.332) TCGA-DM-A1D9-01 2 20518361 20518361 C T PUM2 Missense_Mutation p.D33N 0.40 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-DM-A1D9-01 2 206921556 206921556 G A INO80D Silent p.A110A 0.40 TCGA-DM-A1D9-01 2 206980766 206980766 C T AC007383.4 RNA 0.44 TCGA-DM-A1D9-01 2 231120 231120 T A SH3YL1 Missense_Mutation p.D202V 0.07 tolerated(0.09) possibly_damaging(0.781) TCGA-DM-A1D9-01 2 232070954 232070954 G C ARMC9 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DM-A1D9-01 2 239009073 239009073 C T ESPNL Missense_Mutation p.R5W 0.41 deleterious(0) possibly_damaging(0.847) TCGA-DM-A1D9-01 2 27361377 27361377 C A C2orf53 5'UTR 0.40 TCGA-DM-A1D9-01 2 27599214 27599214 G A SNX17 Missense_Mutation p.R406H 0.47 deleterious(0.03) benign(0.032) TCGA-DM-A1D9-01 2 43452532 43452533 - A ZFP36L2 Frame_Shift_Ins p.Q138Afs*336 0.31 TCGA-DM-A1D9-01 2 48685331 48685333 AAG - PPP1R21 In_Frame_Del p.K115del 0.38 TCGA-DM-A1D9-01 2 56108782 56108782 G T EFEMP1 Missense_Mutation p.P202H 0.37 deleterious(0.02) benign(0.007) TCGA-DM-A1D9-01 2 73800436 73800436 G A ALMS1 Missense_Mutation p.S3810N 0.35 probably_damaging(0.957) TCGA-DM-A1D9-01 2 73800437 73800437 C T ALMS1 Silent p.S3810S 0.34 TCGA-DM-A1D9-01 2 96940753 96940753 A G SNRNP200 Silent p.D2136D 0.09 TCGA-DM-A1D9-01 3 111886083 111886083 T - SLC9C1 Frame_Shift_Del p.T1117Hfs*4 0.25 TCGA-DM-A1D9-01 3 124438029 124438029 C T RP11-71H17.7 5'Flank 0.45 TCGA-DM-A1D9-01 3 130293144 130293144 G T COL6A6 Missense_Mutation p.V1108F 0.32 deleterious(0) probably_damaging(0.914) TCGA-DM-A1D9-01 3 154860044 154860044 G A MME Missense_Mutation p.M371I 0.33 tolerated(0.18) benign(0.003) TCGA-DM-A1D9-01 3 172166021 172166021 G C GHSR Missense_Mutation p.N61K 0.27 deleterious(0) probably_damaging(1) TCGA-DM-A1D9-01 3 185191361 185191361 G A MAP3K13 Missense_Mutation p.A748T 0.39 tolerated_low_confidence(0.29) benign(0.002) TCGA-DM-A1D9-01 3 189675795 189675795 T - LEPREL1 Splice_Site p.X679_splice 0.27 TCGA-DM-A1D9-01 3 36897544 36897544 T C TRANK1 Silent p.K1179K 0.41 TCGA-DM-A1D9-01 3 48577140 48577140 T G PFKFB4 Missense_Mutation p.N148T 0.40 possibly_damaging(0.529) TCGA-DM-A1D9-01 3 85961570 85961570 G T CADM2 Missense_Mutation p.V186F 0.40 deleterious(0) probably_damaging(0.998) TCGA-DM-A1D9-01 3 98002358 98002358 C A OR5H2 Silent p.G209G 0.38 TCGA-DM-A1D9-01 4 1206094 1206094 G A CTBP1 Silent p.H419H 0.39 TCGA-DM-A1D9-01 4 128957155 128957155 A G C4orf29 3'Flank 0.73 TCGA-DM-A1D9-01 4 3478174 3478174 C G DOK7 Missense_Mutation p.P146R 0.41 deleterious(0) probably_damaging(1) TCGA-DM-A1D9-01 4 48082098 48082098 T A TXK Missense_Mutation p.Q335L 0.35 deleterious(0) benign(0.328) TCGA-DM-A1D9-01 4 48542543 48542543 C T FRYL Missense_Mutation p.R2041Q 0.43 deleterious(0.04) possibly_damaging(0.778) TCGA-DM-A1D9-01 4 55155026 55155026 G C PDGFRA Missense_Mutation p.G912A 0.35 deleterious(0) benign(0.252) TCGA-DM-A1D9-01 4 55964865 55964865 C T KDR Missense_Mutation p.R791Q 0.36 deleterious(0.03) possibly_damaging(0.581) TCGA-DM-A1D9-01 5 112176020 112176021 - A APC Frame_Shift_Ins p.C1578Mfs*13 0.37 TCGA-DM-A1D9-01 5 140077223 140077223 C T HARS2 Nonsense_Mutation p.Q423* 0.39 TCGA-DM-A1D9-01 5 140250863 140250863 G T PCDHA11 Silent p.T725T 0.50 TCGA-DM-A1D9-01 5 140481422 140481422 G A PCDHB3 Missense_Mutation p.V397I 0.28 tolerated_low_confidence(0.23) benign(0.008) TCGA-DM-A1D9-01 5 140565793 140565793 C A PCDHB16 3'UTR 0.35 TCGA-DM-A1D9-01 5 140772399 140772399 C T PCDHGA8 Missense_Mutation p.R7C 0.35 tolerated_low_confidence(0.21) benign(0.009) TCGA-DM-A1D9-01 5 141974800 141974800 A T FGF1 3'UTR 0.45 TCGA-DM-A1D9-01 5 156936355 156936355 G A ADAM19 Missense_Mutation p.R287C 0.38 deleterious(0) probably_damaging(0.969) TCGA-DM-A1D9-01 5 169805848 169805848 C T KCNMB1 Missense_Mutation p.V146I 0.36 tolerated(0.09) probably_damaging(0.999) TCGA-DM-A1D9-01 5 178030926 178030926 C G CLK4 Missense_Mutation p.K408N 0.31 deleterious(0.01) benign(0.074) TCGA-DM-A1D9-01 5 182435 182435 C A PLEKHG4B Silent p.A1271A 0.41 TCGA-DM-A1D9-01 5 32395328 32395328 T G ZFR Missense_Mutation p.Q639P 0.08 deleterious(0) unknown(0) TCGA-DM-A1D9-01 5 54696215 54696215 A G SKIV2L2 Missense_Mutation p.E816G 0.05 tolerated(0.15) benign(0.019) TCGA-DM-A1D9-01 5 82834887 82834887 T A VCAN Missense_Mutation p.V2022D 0.27 deleterious(0.01) possibly_damaging(0.467) TCGA-DM-A1D9-01 5 95067647 95067647 G C RHOBTB3 Silent p.L29L 0.16 TCGA-DM-A1D9-01 6 109787491 109787492 - A ZBTB24 Frame_Shift_Ins p.Q553Sfs*10 0.10 TCGA-DM-A1D9-01 6 153019042 153019042 G A MYCT1 Missense_Mutation p.R2Q 0.36 tolerated_low_confidence(1) benign(0) TCGA-DM-A1D9-01 6 154331649 154331649 T C OPRM1 5'UTR 0.12 TCGA-DM-A1D9-01 6 27782326 27782326 C G HIST1H2AJ Missense_Mutation p.E65Q 0.28 deleterious_low_confidence(0.04) benign(0.028) TCGA-DM-A1D9-01 6 43222801 43222801 C T TTBK1 Silent p.A197A 0.45 TCGA-DM-A1D9-01 6 52958264 52958264 G T FBXO9 Missense_Mutation p.R298S 0.37 deleterious(0) probably_damaging(0.971) TCGA-DM-A1D9-01 6 70506763 70506763 G C LMBRD1 Missense_Mutation p.S4C 0.09 tolerated_low_confidence(0.08) benign(0.006) TCGA-DM-A1D9-01 7 126079160 126079160 C A GRM8 3'UTR 0.31 TCGA-DM-A1D9-01 7 139824536 139824536 T A KDM7A Silent p.A312A 0.49 TCGA-DM-A1D9-01 7 150171427 150171427 C G GIMAP8 Missense_Mutation p.T337S 0.11 tolerated(0.47) benign(0.047) TCGA-DM-A1D9-01 7 18767232 18767232 G A HDAC9 Silent p.A587A 0.37 TCGA-DM-A1D9-01 7 1937973 1937973 C G MAD1L1 Missense_Mutation p.V621L 0.36 deleterious(0) possibly_damaging(0.852) TCGA-DM-A1D9-01 7 21901606 21901606 G A DNAH11 Missense_Mutation p.D3787N 0.40 probably_damaging(0.999) TCGA-DM-A1D9-01 7 25181924 25181924 A G C7orf31 Missense_Mutation p.L296P 0.08 deleterious(0) probably_damaging(0.988) TCGA-DM-A1D9-01 7 27147349 27147349 A C HOXA3 3'UTR 0.45 TCGA-DM-A1D9-01 7 27147350 27147350 C T HOXA3 3'UTR 0.45 TCGA-DM-A1D9-01 7 45010261 45010261 G A MYO1G Missense_Mutation p.R383W 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-DM-A1D9-01 7 47342938 47342938 C T TNS3 Missense_Mutation p.G1023S 0.23 tolerated(0.74) benign(0.006) TCGA-DM-A1D9-01 7 72743428 72743428 C G FKBP6 Missense_Mutation p.P81A 0.07 deleterious(0) probably_damaging(0.96) TCGA-DM-A1D9-01 7 74159202 74159202 G A GTF2I Missense_Mutation p.R619Q 0.19 tolerated(0.13) probably_damaging(0.968) TCGA-DM-A1D9-01 7 78636413 78636413 C T MAGI2 Silent p.T137T 0.44 TCGA-DM-A1D9-01 7 80108232 80108232 C T GNAT3 Missense_Mutation p.R129Q 0.40 tolerated(0.15) benign(0.021) TCGA-DM-A1D9-01 7 94296478 94296478 G T PEG10 3'UTR 0.36 TCGA-DM-A1D9-01 8 10470642 10470642 G A RP1L1 Silent p.S322S 0.71 TCGA-DM-A1D9-01 8 145027905 145027905 C G PLEC 5'Flank 0.33 TCGA-DM-A1D9-01 8 54792139 54792139 G A RGS20 Missense_Mutation p.A163T 0.47 tolerated_low_confidence(0.54) benign(0.003) TCGA-DM-A1D9-01 8 67963526 67963526 A T COPS5 Nonsense_Mutation p.L237* 0.31 TCGA-DM-A1D9-01 8 97506425 97506425 G A SDC2 5'UTR 0.67 TCGA-DM-A1D9-01 9 101243226 101243226 T A GABBR2 Missense_Mutation p.K262N 0.36 deleterious(0.01) possibly_damaging(0.674) TCGA-DM-A1D9-01 9 117849073 117849073 G T TNC Missense_Mutation p.L313I 0.07 tolerated(0.16) probably_damaging(0.989) TCGA-DM-A1D9-01 9 133787222 133787222 C T FIBCD1 Silent p.A301A 0.38 TCGA-DM-A1D9-01 9 138236177 138236177 T C C9orf62 Missense_Mutation p.V128A 0.37 tolerated_low_confidence(0.3) benign(0.294) TCGA-DM-A1D9-01 9 19786214 19786214 G T SLC24A2 Silent p.L217L 0.14 TCGA-DM-A1D9-01 9 19786265 19786265 G T SLC24A2 Missense_Mutation p.H200Q 0.40 tolerated(0.13) possibly_damaging(0.723) TCGA-DM-A1D9-01 9 34646656 34646656 T C GALT 5'UTR 0.37 TCGA-DM-A1D9-01 9 35813473 35813473 C T HINT2 Missense_Mutation p.R99Q 0.41 tolerated(0.85) benign(0.058) TCGA-DM-A1D9-01 9 37034100 37034100 T C PAX5 5'UTR 0.24 TCGA-DM-A1D9-01 9 71098912 71098912 C T PGM5 Missense_Mutation p.T476M 0.40 deleterious(0.03) benign(0.018) TCGA-DM-A1D9-01 9 80851471 80851471 C T CEP78 Missense_Mutation p.P69S 0.40 tolerated(0.43) probably_damaging(0.998) TCGA-DM-A1D9-01 X 107829919 107829919 A C COL4A5 Missense_Mutation p.E369D 0.08 unknown(0) TCGA-DM-A1D9-01 X 117742039 117742039 C A DOCK11 Missense_Mutation p.L896I 0.19 tolerated(0.43) benign(0.011) TCGA-DM-A1D9-01 X 128709186 128709186 G A OCRL Missense_Mutation p.E558K 0.20 deleterious(0) probably_damaging(0.999) TCGA-DM-A1D9-01 X 12995159 12995172 GGAAGAAGTGGGGT - TMSB4X 3'UTR 0.15 TCGA-DM-A1D9-01 X 136113834 136113834 G A GPR101 5'Flank 0.33 TCGA-DM-A1D9-01 X 138724659 138724659 G A MCF2 Intron 0.44 TCGA-DM-A1D9-01 X 153032872 153032872 C T PLXNB3 Missense_Mutation p.S220L 0.55 deleterious(0.03) possibly_damaging(0.489) TCGA-DM-A1D9-01 X 37028496 37028496 C T FAM47C Silent p.P671P 0.41 TCGA-DM-A1D9-01 X 54784301 54784301 G C ITIH6 Missense_Mutation p.L736V 0.33 tolerated(0.12) benign(0.115) TCGA-DM-A1D9-01 X 63411939 63411939 A - AMER1 Frame_Shift_Del p.W410Gfs*12 0.25 TCGA-DM-A1D9-01 X 70460764 70460764 G T ZMYM3 3'UTR 0.45 TCGA-DM-A1D9-01 X 72783195 72783195 G A CHIC1 Silent p.A25A 0.32 TCGA-DM-A1D9-01 X 78012169 78012169 C A LPAR4 3'UTR 0.21 TCGA-DM-A1D9-01 X 88009044 88009044 A T CPXCR1 Missense_Mutation p.E210V 0.18 deleterious(0) possibly_damaging(0.895) TCGA-DM-A1DA-01 10 100022716 100022716 G C LOXL4 Missense_Mutation p.P21A 0.31 tolerated(0.11) benign(0.005) TCGA-DM-A1DA-01 10 107022119 107022119 A G SORCS3 Silent p.Q1158Q 0.31 TCGA-DM-A1DA-01 10 115335688 115335688 G C HABP2 Missense_Mutation p.G86R 0.18 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 10 122668272 122668272 G T WDR11 3'UTR 0.33 TCGA-DM-A1DA-01 10 125426446 125426446 G A GPR26 Missense_Mutation p.A175T 0.90 tolerated(0.28) benign(0.005) TCGA-DM-A1DA-01 10 127738224 127738224 G A ADAM12 Missense_Mutation p.P545S 0.67 deleterious(0) probably_damaging(0.976) TCGA-DM-A1DA-01 10 13167515 13167515 G T OPTN Nonsense_Mutation p.E366* 0.62 TCGA-DM-A1DA-01 10 48429035 48429035 G T GDF10 Missense_Mutation p.A284E 0.27 deleterious(0.01) benign(0.329) TCGA-DM-A1DA-01 10 51623136 51623136 A C TIMM23 Missense_Mutation p.S27A 0.38 tolerated(0.2) benign(0.319) TCGA-DM-A1DA-01 10 71332382 71332382 G A NEUROG3 Missense_Mutation p.R140C 0.28 deleterious(0) probably_damaging(0.982) TCGA-DM-A1DA-01 10 71868832 71868832 C A H2AFY2 Silent p.I274I 0.62 TCGA-DM-A1DA-01 10 71868834 71868834 A T H2AFY2 Missense_Mutation p.H275L 0.63 deleterious(0) possibly_damaging(0.615) TCGA-DM-A1DA-01 10 72511880 72511880 C A ADAMTS14 Missense_Mutation p.R879S 0.55 tolerated(0.06) benign(0.319) TCGA-DM-A1DA-01 10 81113658 81113658 C T PPIF 3'UTR 0.96 TCGA-DM-A1DA-01 10 85984352 85984352 C T LRIT2 Missense_Mutation p.G210E 0.56 deleterious(0.02) possibly_damaging(0.634) TCGA-DM-A1DA-01 10 89692997 89692998 AG - PTEN Frame_Shift_Del p.D162Qfs*17 0.51 TCGA-DM-A1DA-01 11 113075012 113075012 A G NCAM1 Silent p.A103A 0.08 TCGA-DM-A1DA-01 11 115111089 115111089 A G CADM1 Missense_Mutation p.V59A 0.39 deleterious(0.01) benign(0.16) TCGA-DM-A1DA-01 11 117299519 117299519 C T DSCAML1 Missense_Mutation p.S1956N 0.39 tolerated_low_confidence(0.12) benign(0.008) TCGA-DM-A1DA-01 11 117302345 117302345 C T DSCAML1 Missense_Mutation p.R1820H 0.44 tolerated(0.79) benign(0.014) TCGA-DM-A1DA-01 11 118530111 118530111 G A TREH Missense_Mutation p.A467V 0.29 tolerated(0.06) probably_damaging(0.923) TCGA-DM-A1DA-01 11 120776163 120776163 C T GRIK4 Silent p.N479N 0.36 TCGA-DM-A1DA-01 11 1968571 1968571 C T MRPL23 5'UTR 0.80 TCGA-DM-A1DA-01 11 22382502 22382502 G T SLC17A6 Missense_Mutation p.R211S 0.38 deleterious(0) probably_damaging(0.973) TCGA-DM-A1DA-01 11 35489549 35489549 G T PAMR1 Missense_Mutation p.L274I 0.38 tolerated(0.17) benign(0.04) TCGA-DM-A1DA-01 11 45671646 45671646 G A CHST1 Silent p.C276C 0.41 TCGA-DM-A1DA-01 11 45939324 45939324 C T PEX16 Silent p.E13E 0.54 TCGA-DM-A1DA-01 11 46745035 46745035 G A F2 Missense_Mutation p.V176M 0.35 deleterious(0.01) possibly_damaging(0.634) TCGA-DM-A1DA-01 11 47182868 47182868 G C C11orf49 Intron 0.50 TCGA-DM-A1DA-01 11 55735468 55735468 G A OR10AG1 Missense_Mutation p.P158S 0.41 tolerated(0.23) benign(0.138) TCGA-DM-A1DA-01 11 57080351 57080351 G C TNKS1BP1 Missense_Mutation p.P604R 0.43 deleterious(0) possibly_damaging(0.847) TCGA-DM-A1DA-01 11 57569529 57569529 A G CTNND1 Silent p.G427G 0.47 TCGA-DM-A1DA-01 11 61036437 61036437 G A VWCE Silent p.H613H 0.41 TCGA-DM-A1DA-01 11 61605261 61605261 C T FADS2 Silent p.R73R 0.58 TCGA-DM-A1DA-01 11 64022367 64022367 C G PLCB3 Intron 0.49 TCGA-DM-A1DA-01 11 64802997 64802997 C G SNX15 Missense_Mutation p.P176A 0.48 tolerated(0.2) benign(0.345) TCGA-DM-A1DA-01 11 66283165 66283165 G C BBS1 Missense_Mutation p.E161Q 0.41 tolerated(0.12) benign(0.025) TCGA-DM-A1DA-01 11 67560489 67560489 C T FAM86C2P RNA 0.32 TCGA-DM-A1DA-01 11 78498090 78498090 C T TENM4 Missense_Mutation p.V740I 0.49 tolerated(0.47) benign(0.021) TCGA-DM-A1DA-01 11 7949409 7949409 T G OR10A6 Silent p.S267S 0.41 TCGA-DM-A1DA-01 11 8122394 8122394 C T TUB Missense_Mutation p.R468C 0.44 deleterious(0.02) probably_damaging(0.968) TCGA-DM-A1DA-01 11 82959088 82959088 G C ANKRD42 3'UTR 0.33 TCGA-DM-A1DA-01 11 87030364 87030364 G T TMEM135 Missense_Mutation p.V397F 0.36 tolerated(0.09) probably_damaging(0.916) TCGA-DM-A1DA-01 11 92531498 92531498 A T FAT3 Missense_Mutation p.Q1773H 0.44 benign(0.001) TCGA-DM-A1DA-01 12 104458302 104458302 G T HCFC2 5'UTR 0.96 TCGA-DM-A1DA-01 12 110600850 110600850 G A IFT81 Missense_Mutation p.E390K 0.41 tolerated(0.11) benign(0.037) TCGA-DM-A1DA-01 12 113758877 113758877 C A SLC8B1 Missense_Mutation p.V116F 0.83 deleterious(0) probably_damaging(0.989) TCGA-DM-A1DA-01 12 131297509 131297509 C T STX2 Silent p.K91K 0.92 TCGA-DM-A1DA-01 12 132284067 132284067 C T SFSWAP 3'UTR 0.83 TCGA-DM-A1DA-01 12 24736573 24736573 G T LINC00477 RNA 0.85 TCGA-DM-A1DA-01 12 5021428 5021428 G A KCNA1 Missense_Mutation p.R295H 0.87 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DA-01 12 52115540 52115540 G A SCN8A Missense_Mutation p.G616S 0.83 tolerated(0.43) benign(0.026) TCGA-DM-A1DA-01 12 53876716 53876716 G T MAP3K12 Missense_Mutation p.P624H 1.00 tolerated_low_confidence(0.08) possibly_damaging(0.752) TCGA-DM-A1DA-01 12 56522161 56522161 C T ESYT1 Missense_Mutation p.P20S 0.84 tolerated(0.07) benign(0.009) TCGA-DM-A1DA-01 12 62946853 62946853 C G MON2 Missense_Mutation p.R1037G 0.90 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 12 75756909 75756909 C T GLIPR1L1 Silent p.Y183Y 0.92 TCGA-DM-A1DA-01 12 95914893 95914893 C T USP44 Missense_Mutation p.E607K 0.93 deleterious(0.03) benign(0.102) TCGA-DM-A1DA-01 13 113681184 113681184 G A MCF2L Intron 0.62 TCGA-DM-A1DA-01 13 21557822 21557822 C A LATS2 Missense_Mutation p.G675W 0.54 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 13 23914152 23914152 G A SACS Missense_Mutation p.A1288V 0.45 benign(0.001) TCGA-DM-A1DA-01 13 29600785 29600785 G T MTUS2 Missense_Mutation p.R660S 0.49 deleterious(0) probably_damaging(0.998) TCGA-DM-A1DA-01 13 32823729 32823729 G T FRY Missense_Mutation p.A2359S 0.47 tolerated(0.54) benign(0.04) TCGA-DM-A1DA-01 13 36445391 36445391 G A DCLK1 Missense_Mutation p.R304C 0.47 deleterious(0.04) possibly_damaging(0.835) TCGA-DM-A1DA-01 13 41379378 41379378 G A SLC25A15 Missense_Mutation p.A147T 0.45 tolerated(0.46) benign(0.007) TCGA-DM-A1DA-01 13 42874465 42874465 T C AKAP11 Missense_Mutation p.F528S 0.46 tolerated(0.38) benign(0.008) TCGA-DM-A1DA-01 13 43462589 43462589 C A EPSTI1 Nonsense_Mutation p.E344* 0.46 TCGA-DM-A1DA-01 13 45983191 45983191 A T SLC25A30 Nonsense_Mutation p.L28* 0.44 TCGA-DM-A1DA-01 13 78177270 78177270 G A SCEL Missense_Mutation p.G366E 0.43 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-DM-A1DA-01 13 95055411 95055411 C T GPC6 Silent p.H536H 0.46 TCGA-DM-A1DA-01 14 100803480 100803480 C A WARS Silent p.G391G 0.49 TCGA-DM-A1DA-01 14 104643572 104643572 G A KIF26A Missense_Mutation p.G1483S 0.56 tolerated(1) benign(0) TCGA-DM-A1DA-01 14 106405869 106405869 C T IGHV6-1 Silent p.S35S 0.44 TCGA-DM-A1DA-01 14 19378324 19378324 C A OR11H12 Missense_Mutation p.P244H 0.28 deleterious(0) probably_damaging(0.988) TCGA-DM-A1DA-01 14 20295718 20295718 C A OR4N2 Silent p.I37I 0.23 TCGA-DM-A1DA-01 14 24718500 24718500 C T TGM1 3'UTR 0.36 TCGA-DM-A1DA-01 14 24761935 24761935 C A DHRS1 Missense_Mutation p.G144W 0.55 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 14 31062846 31062846 G A G2E3 Splice_Site p.X176_splice 0.42 TCGA-DM-A1DA-01 14 58604742 58604742 A C C14orf37 Silent p.S445S 0.42 TCGA-DM-A1DA-01 14 74823941 74823941 C T VRTN Missense_Mutation p.T152M 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-DM-A1DA-01 14 77778329 77778329 C T POMT2 Missense_Mutation p.R99H 0.46 tolerated(0.06) possibly_damaging(0.477) TCGA-DM-A1DA-01 14 90650864 90650864 C T KCNK13 Silent p.N248N 0.45 TCGA-DM-A1DA-01 14 92139314 92139314 G A CATSPERB Missense_Mutation p.P342L 0.38 deleterious(0) probably_damaging(0.965) TCGA-DM-A1DA-01 14 96136816 96136816 G A TCL6 RNA 0.54 TCGA-DM-A1DA-01 14 99870619 99870619 C A SETD3 Nonsense_Mutation p.E374* 0.47 TCGA-DM-A1DA-01 15 28544575 28544575 G - HERC2 Frame_Shift_Del p.Q54Rfs*23 0.88 TCGA-DM-A1DA-01 15 48494240 48494240 A C CTXN2 3'UTR 0.88 TCGA-DM-A1DA-01 15 54586259 54586259 T G UNC13C Missense_Mutation p.L1329V 0.98 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-DM-A1DA-01 15 66840710 66840710 G T LCTL 3'UTR 0.80 TCGA-DM-A1DA-01 15 67482777 67482777 G T SMAD3 Missense_Mutation p.C394F 0.88 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DA-01 15 74241908 74241908 A C LOXL1 Missense_Mutation p.I571L 0.25 tolerated(0.12) possibly_damaging(0.541) TCGA-DM-A1DA-01 15 83935777 83935777 C T BNC1 Silent p.V82V 0.92 TCGA-DM-A1DA-01 16 13328984 13328984 C T SHISA9 Silent p.D331D 0.95 TCGA-DM-A1DA-01 16 22448704 22448704 G A RRN3P3 RNA 0.41 TCGA-DM-A1DA-01 16 30507552 30507552 G C ITGAL Missense_Mutation p.E546D 0.89 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 16 4606649 4606649 G T C16orf96 Silent p.L53L 0.92 TCGA-DM-A1DA-01 16 65005519 65005519 G T CDH11 Silent p.I535I 0.82 TCGA-DM-A1DA-01 16 90128869 90128869 G A PRDM7 Nonsense_Mutation p.R184* 0.92 TCGA-DM-A1DA-01 17 12043154 12043154 A G MAP2K4 Splice_Site p.X347_splice 0.83 TCGA-DM-A1DA-01 17 2601589 2601589 G A CLUH Missense_Mutation p.T483M 0.89 deleterious(0.03) probably_damaging(0.978) TCGA-DM-A1DA-01 17 27041835 27041835 C G RAB34 Missense_Mutation p.A287P 0.84 tolerated(0.18) benign(0.015) TCGA-DM-A1DA-01 17 29576111 29576111 C T NF1 Nonsense_Mutation p.R1362* 0.87 TCGA-DM-A1DA-01 17 37934014 37934014 G A IKZF3 Missense_Mutation p.A239V 0.92 tolerated(0.5) benign(0.001) TCGA-DM-A1DA-01 17 38240965 38240965 C A THRA Missense_Mutation p.P158Q 0.19 deleterious(0.02) possibly_damaging(0.879) TCGA-DM-A1DA-01 17 39538217 39538217 C A KRT34 Missense_Mutation p.Q136H 0.92 tolerated(0.09) possibly_damaging(0.866) TCGA-DM-A1DA-01 17 39620587 39620587 C T KRT32 Missense_Mutation p.E273K 0.85 deleterious(0) possibly_damaging(0.803) TCGA-DM-A1DA-01 17 41738781 41738781 G C MEOX1 Missense_Mutation p.T41S 0.92 tolerated(0.95) benign(0.03) TCGA-DM-A1DA-01 17 41955243 41955243 C T MPP2 Missense_Mutation p.E531K 0.97 tolerated(1) benign(0.082) TCGA-DM-A1DA-01 17 42334803 42334803 C T SLC4A1 Missense_Mutation p.R514H 0.91 deleterious(0.02) probably_damaging(0.977) TCGA-DM-A1DA-01 17 4936569 4936569 C A SLC52A1 Missense_Mutation p.G374V 0.82 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 17 59093133 59093133 C T BCAS3 Missense_Mutation p.S503F 0.90 deleterious(0.02) benign(0.085) TCGA-DM-A1DA-01 17 67020394 67020394 C T ABCA9 Missense_Mutation p.V748I 0.83 tolerated(0.09) benign(0.013) TCGA-DM-A1DA-01 17 72368497 72368497 G A GPR142 Missense_Mutation p.V383M 0.91 tolerated(0.08) benign(0.346) TCGA-DM-A1DA-01 17 7578280 7578280 G A TP53 Missense_Mutation p.P190L 0.90 deleterious(0.05) possibly_damaging(0.812) TCGA-DM-A1DA-01 17 80400266 80400266 G A HEXDC Missense_Mutation p.R519K 0.93 deleterious_low_confidence(0.02) benign(0.14) TCGA-DM-A1DA-01 17 8731897 8731897 A T PIK3R6 Missense_Mutation p.Y434N 0.93 deleterious(0) probably_damaging(0.975) TCGA-DM-A1DA-01 18 24496569 24496569 T C CHST9 Missense_Mutation p.K329R 0.59 tolerated(0.31) benign(0.11) TCGA-DM-A1DA-01 18 35145542 35145542 G A CELF4 Silent p.N21N 0.87 TCGA-DM-A1DA-01 18 44260299 44260299 C T ST8SIA5 Silent p.P279P 0.94 TCGA-DM-A1DA-01 18 51900583 51900583 G A C18orf54 Splice_Site p.X326_splice 0.86 TCGA-DM-A1DA-01 18 8825455 8825455 C T SOGA2 Missense_Mutation p.T1316M 0.29 deleterious(0) probably_damaging(0.938) TCGA-DM-A1DA-01 19 10114272 10114272 G A COL5A3 Missense_Mutation p.S273L 0.93 unknown(0) TCGA-DM-A1DA-01 19 1250457 1250457 G C MIDN Missense_Mutation p.E54D 0.53 tolerated(0.12) benign(0.291) TCGA-DM-A1DA-01 19 1782092 1782092 G A ATP8B3 3'UTR 0.90 TCGA-DM-A1DA-01 19 21992198 21992198 G T ZNF43 Missense_Mutation p.P214H 0.93 tolerated(0.52) benign(0.005) TCGA-DM-A1DA-01 19 23329541 23329541 G T ZNF730 3'UTR 0.93 TCGA-DM-A1DA-01 19 31769762 31769762 C T TSHZ3 Missense_Mutation p.A313T 0.88 tolerated(0.43) benign(0.016) TCGA-DM-A1DA-01 19 36321767 36321767 G T NPHS1 Silent p.P1191P 0.90 TCGA-DM-A1DA-01 19 3730386 3730386 G A TJP3 Missense_Mutation p.A108T 0.82 tolerated(0.23) benign(0.002) TCGA-DM-A1DA-01 19 44223318 44223318 G A IRGC Missense_Mutation p.R203Q 0.88 tolerated(0.52) probably_damaging(0.974) TCGA-DM-A1DA-01 19 47863314 47863314 C T DHX34 Silent p.F454F 0.94 TCGA-DM-A1DA-01 19 54403681 54403681 C T PRKCG Missense_Mutation p.A461V 0.93 deleterious(0) possibly_damaging(0.53) TCGA-DM-A1DA-01 19 57328800 57328800 C T PEG3 Missense_Mutation p.R337Q 0.40 tolerated(0.13) benign(0.046) TCGA-DM-A1DA-01 19 6667146 6667146 G T TNFSF14 Silent p.V92V 1.00 TCGA-DM-A1DA-01 19 9047604 9047604 C A MUC16 Nonsense_Mutation p.E11343* 0.87 TCGA-DM-A1DA-01 19 9070910 9070910 G T MUC16 Silent p.P5512P 0.91 TCGA-DM-A1DA-01 1 10318693 10318693 G T KIF1B Missense_Mutation p.G109V 0.39 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 1 110604183 110604183 G T ALX3 Silent p.V199V 0.46 TCGA-DM-A1DA-01 1 1147102 1147102 C T TNFRSF4 Missense_Mutation p.D249N 0.62 tolerated(0.74) benign(0.001) TCGA-DM-A1DA-01 1 115258747 115258747 C A NRAS Missense_Mutation p.G12V 0.52 deleterious(0) possibly_damaging(0.902) TCGA-DM-A1DA-01 1 11586795 11586795 C T PTCHD2 Missense_Mutation p.R901C 0.44 deleterious_low_confidence(0.02) benign(0.386) TCGA-DM-A1DA-01 1 142804465 142804465 G A RP11-423O2.5 RNA 0.24 TCGA-DM-A1DA-01 1 142804543 142804543 G A RP11-423O2.5 RNA 0.21 TCGA-DM-A1DA-01 1 142805268 142805268 G C RP11-423O2.5 RNA 0.20 TCGA-DM-A1DA-01 1 147381379 147381379 G A GJA8 Missense_Mutation p.V433I 0.52 tolerated(0.51) unknown(0) TCGA-DM-A1DA-01 1 150482273 150482273 C A ECM1 Intron 0.39 TCGA-DM-A1DA-01 1 154931836 154931836 G A PYGO2 Nonsense_Mutation p.R214* 0.56 TCGA-DM-A1DA-01 1 1558857 1558857 G A MIB2 Missense_Mutation p.V124M 0.41 tolerated(0.66) benign(0.095) TCGA-DM-A1DA-01 1 159898542 159898542 C T IGSF9 Missense_Mutation p.R879H 0.43 tolerated(0.19) benign(0.015) TCGA-DM-A1DA-01 1 160342540 160342540 C G NHLH1 3'UTR 0.42 TCGA-DM-A1DA-01 1 16383423 16383423 A C CLCNKB 3'UTR 0.39 TCGA-DM-A1DA-01 1 16458334 16458334 G A EPHA2 Missense_Mutation p.P786L 0.39 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 1 16945464 16945464 C A RP5-1182A14.5 3'Flank 0.07 TCGA-DM-A1DA-01 1 16945465 16945465 C T RP5-1182A14.5 3'Flank 0.07 TCGA-DM-A1DA-01 1 193104553 193104553 T G CDC73 Missense_Mutation p.L114V 0.47 tolerated(0.18) benign(0.03) TCGA-DM-A1DA-01 1 202705349 202705349 G C KDM5B Missense_Mutation p.L1086V 0.48 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DA-01 1 209963984 209963984 C A IRF6 Missense_Mutation p.V306F 0.42 deleterious(0.01) probably_damaging(0.928) TCGA-DM-A1DA-01 1 21929349 21929349 G A RAP1GAP Missense_Mutation p.R560C 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-DM-A1DA-01 1 225380579 225380579 T C DNAH14 Missense_Mutation p.L1524P 0.47 tolerated(0.06) benign(0) TCGA-DM-A1DA-01 1 23637452 23637452 C T HNRNPR Missense_Mutation p.G469D 0.38 tolerated(0.2) unknown(0) TCGA-DM-A1DA-01 1 242264008 242264008 C T PLD5 Missense_Mutation p.R439H 0.48 tolerated(1) benign(0.015) TCGA-DM-A1DA-01 1 33409679 33409679 C T RNF19B Missense_Mutation p.S449N 0.49 deleterious(0.01) possibly_damaging(0.45) TCGA-DM-A1DA-01 1 36769811 36769811 G T THRAP3 3'UTR 0.56 TCGA-DM-A1DA-01 1 36932888 36932888 A T CSF3R Missense_Mutation p.S661R 0.46 deleterious(0.04) possibly_damaging(0.568) TCGA-DM-A1DA-01 1 40235530 40235530 G T OXCT2 Silent p.I466I 0.41 TCGA-DM-A1DA-01 1 49193567 49193567 A T BEND5 Missense_Mutation p.N419K 0.48 deleterious_low_confidence(0.03) benign(0.378) TCGA-DM-A1DA-01 1 6534132 6534132 C A PLEKHG5 Missense_Mutation p.G257W 0.50 deleterious(0.01) possibly_damaging(0.815) TCGA-DM-A1DA-01 20 10023826 10023826 G A ANKEF1 Missense_Mutation p.A135T 0.24 deleterious(0.01) probably_damaging(1) TCGA-DM-A1DA-01 20 17705679 17705679 C A BANF2 Missense_Mutation p.N10K 0.54 tolerated(0.12) benign(0.037) TCGA-DM-A1DA-01 20 23334772 23334772 C T NXT1 Missense_Mutation p.R32W 0.62 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 20 25485677 25485677 G C NINL Missense_Mutation p.S185R 0.61 deleterious(0.02) benign(0.075) TCGA-DM-A1DA-01 20 3739208 3739208 T C C20orf27 Missense_Mutation p.E71G 0.58 deleterious(0.02) possibly_damaging(0.681) TCGA-DM-A1DA-01 20 4708654 4708654 G A PRND 3'UTR 0.63 TCGA-DM-A1DA-01 20 50049244 50049244 G A NFATC2 Silent p.I694I 0.52 TCGA-DM-A1DA-01 20 50418857 50418857 C A SALL4 Missense_Mutation p.A31S 0.32 tolerated(0.11) benign(0.345) TCGA-DM-A1DA-01 20 55929135 55929135 G A RAE1 Missense_Mutation p.G14E 0.65 deleterious(0.02) unknown(0) TCGA-DM-A1DA-01 21 10862962 10862962 A G IGHV1OR21-1 Silent p.R86R 0.31 TCGA-DM-A1DA-01 21 10906905 10906905 T C TPTE Silent p.%3D 0.28 TCGA-DM-A1DA-01 22 16287580 16287580 G A POTEH Silent p.C102C 0.22 TCGA-DM-A1DA-01 22 20458853 20458853 C T RIMBP3 Missense_Mutation p.V817M 0.24 tolerated(0.09) benign(0.013) TCGA-DM-A1DA-01 22 24649321 24649321 G T POM121L9P RNA 0.41 TCGA-DM-A1DA-01 22 25251317 25251317 G T SGSM1 Missense_Mutation p.A197S 0.49 deleterious(0) probably_damaging(0.997) TCGA-DM-A1DA-01 22 29456549 29456549 A T C22orf31 Missense_Mutation p.F96I 0.45 deleterious(0.04) benign(0.436) TCGA-DM-A1DA-01 22 29686622 29686622 G T EWSR1 Intron 0.35 TCGA-DM-A1DA-01 22 35789491 35789491 A G HMOX1 Missense_Mutation p.K256R 0.52 tolerated(0.2) benign(0.015) TCGA-DM-A1DA-01 22 36122938 36122938 G A APOL5 Missense_Mutation p.G275R 0.49 tolerated(0.31) benign(0.21) TCGA-DM-A1DA-01 22 36696913 36696914 - TCT MYH9 In_Frame_Ins p.K940dup 0.41 TCGA-DM-A1DA-01 22 45691656 45691656 T C UPK3A 3'UTR 0.17 TCGA-DM-A1DA-01 22 48940655 48940655 A T CTA-299D3.8 Missense_Mutation p.S52T 0.59 benign(0.302) TCGA-DM-A1DA-01 2 108863805 108863805 C A SULT1C3 Missense_Mutation p.A52E 0.30 deleterious(0) probably_damaging(0.916) TCGA-DM-A1DA-01 2 1161256 1161256 G T SNTG2 Missense_Mutation p.G145V 0.21 deleterious(0) probably_damaging(0.996) TCGA-DM-A1DA-01 2 1204905 1204905 G A SNTG2 Silent p.T236T 0.67 TCGA-DM-A1DA-01 2 132480181 132480181 A C C2orf27A 5'UTR 0.34 TCGA-DM-A1DA-01 2 152393677 152393677 A T NEB Missense_Mutation p.L7059Q 0.35 probably_damaging(0.993) TCGA-DM-A1DA-01 2 162036165 162036165 C T TANK 5'UTR 0.36 TCGA-DM-A1DA-01 2 162757481 162757481 C A SLC4A10 Missense_Mutation p.H468N 0.39 tolerated(0.25) benign(0) TCGA-DM-A1DA-01 2 167327188 167327188 A C SCN7A Missense_Mutation p.F201V 0.32 tolerated(0.19) benign(0.17) TCGA-DM-A1DA-01 2 171700554 171700554 G T GAD1 Splice_Site p.X213_splice 0.38 TCGA-DM-A1DA-01 2 179590682 179590682 C T TTN Silent p.P6789P 0.27 TCGA-DM-A1DA-01 2 179639041 179639041 C T TTN Missense_Mutation p.R2317H 0.36 TCGA-DM-A1DA-01 2 192012911 192012911 C - STAT4 Frame_Shift_Del p.V7Sfs*4 0.34 TCGA-DM-A1DA-01 2 210518011 210518011 A G MAP2 Silent p.E39E 0.35 TCGA-DM-A1DA-01 2 210787087 210787087 G A UNC80 Missense_Mutation p.R1815H 0.59 probably_damaging(0.995) TCGA-DM-A1DA-01 2 212285296 212285296 T G ERBB4 Missense_Mutation p.K1002T 0.41 tolerated(0.41) benign(0.103) TCGA-DM-A1DA-01 2 218686493 218686493 G T TNS1 Missense_Mutation p.S1077Y 0.64 deleterious(0) probably_damaging(0.95) TCGA-DM-A1DA-01 2 219301899 219301899 C A VIL1 Missense_Mutation p.A675E 0.66 tolerated(0.27) benign(0.435) TCGA-DM-A1DA-01 2 220354180 220354180 C A SPEG Missense_Mutation p.P2814T 0.31 benign(0.034) TCGA-DM-A1DA-01 2 227953481 227953481 G A COL4A4 Missense_Mutation p.P504L 0.53 possibly_damaging(0.507) TCGA-DM-A1DA-01 2 233392142 233392142 T C CHRND Missense_Mutation p.V77A 0.35 deleterious(0.02) probably_damaging(0.968) TCGA-DM-A1DA-01 2 234178692 234178692 A G ATG16L1 Missense_Mutation p.K229R 0.33 tolerated(0.42) possibly_damaging(0.601) TCGA-DM-A1DA-01 2 239161750 239161750 C A PER2 Missense_Mutation p.A972S 0.32 tolerated(1) benign(0.007) TCGA-DM-A1DA-01 2 242430475 242430475 G C FARP2 Splice_Site p.X835_splice 0.33 TCGA-DM-A1DA-01 2 26203515 26203515 G T KIF3C Silent p.G424G 0.57 TCGA-DM-A1DA-01 2 26676324 26676324 A G DRC1 Missense_Mutation p.E609G 0.63 tolerated(0.12) benign(0.005) TCGA-DM-A1DA-01 2 27305480 27305480 C A EMILIN1 Silent p.R347R 0.29 TCGA-DM-A1DA-01 2 29226418 29226418 G A FAM179A Missense_Mutation p.A234T 0.28 deleterious(0.02) benign(0.047) TCGA-DM-A1DA-01 2 29240691 29240691 C A FAM179A Missense_Mutation p.S410Y 0.63 deleterious(0) probably_damaging(0.979) TCGA-DM-A1DA-01 2 31573035 31573035 G A XDH Missense_Mutation p.R896W 0.63 deleterious(0) probably_damaging(0.978) TCGA-DM-A1DA-01 2 5837504 5837504 A G SOX11 3'UTR 0.62 TCGA-DM-A1DA-01 2 68740286 68740286 A G APLF Missense_Mutation p.E139G 0.63 tolerated(0.21) benign(0.006) TCGA-DM-A1DA-01 2 71748026 71748026 G A DYSF Missense_Mutation p.E381K 0.33 deleterious(0.02) possibly_damaging(0.46) TCGA-DM-A1DA-01 2 73456041 73456041 G A PRADC1 Missense_Mutation p.R110W 0.82 deleterious(0.04) possibly_damaging(0.825) TCGA-DM-A1DA-01 2 74043208 74043208 A T C2orf78 Nonsense_Mutation p.K620* 0.24 TCGA-DM-A1DA-01 2 74702430 74702430 G T CCDC142 Missense_Mutation p.A566D 0.66 deleterious(0.01) probably_damaging(0.925) TCGA-DM-A1DA-01 2 74743311 74743311 G T TLX2 Missense_Mutation p.V284L 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.501) TCGA-DM-A1DA-01 2 85662108 85662108 G A SH2D6 Silent p.P10P 0.26 TCGA-DM-A1DA-01 3 122631054 122631054 G A SEMA5B Missense_Mutation p.T1008M 0.35 deleterious(0.05) probably_damaging(0.99) TCGA-DM-A1DA-01 3 123359228 123359228 G A MYLK Silent p.I1581I 0.34 TCGA-DM-A1DA-01 3 130361861 130361861 C T COL6A6 Missense_Mutation p.R1741C 0.39 deleterious(0) benign(0.17) TCGA-DM-A1DA-01 3 130442412 130442412 G A PIK3R4 Silent p.G609G 0.42 TCGA-DM-A1DA-01 3 133647703 133647703 G A C3orf36 5'UTR 0.43 TCGA-DM-A1DA-01 3 138025319 138025319 G A NME9 Missense_Mutation p.S94L 0.47 tolerated(0.22) benign(0.02) TCGA-DM-A1DA-01 3 154145466 154145466 A G GPR149 Missense_Mutation p.F338S 0.43 tolerated(0.09) benign(0.027) TCGA-DM-A1DA-01 3 167319914 167319914 C T WDR49 Splice_Site p.X84_splice 0.46 TCGA-DM-A1DA-01 3 191179213 191179213 G T PYDC2 Missense_Mutation p.A88S 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-DM-A1DA-01 3 196387040 196387040 G A NRROS Missense_Mutation p.V176I 0.62 tolerated(0.41) benign(0.016) TCGA-DM-A1DA-01 3 35763128 35763128 G T ARPP21 Missense_Mutation p.G309W 0.35 deleterious(0) probably_damaging(0.98) TCGA-DM-A1DA-01 3 42244336 42244336 C T TRAK1 Intron 0.57 TCGA-DM-A1DA-01 3 49694549 49694549 G A BSN Silent p.G2520G 0.81 TCGA-DM-A1DA-01 3 53766889 53766892 GCCG - CACNA1D Frame_Shift_Del p.A861Dfs*10 0.64 TCGA-DM-A1DA-01 3 77693972 77693972 C A ROBO2 Missense_Mutation p.A1367E 0.45 deleterious_low_confidence(0.01) benign(0.002) TCGA-DM-A1DA-01 4 114294605 114294605 G C ANK2 Missense_Mutation p.E3953D 0.92 probably_damaging(0.999) TCGA-DM-A1DA-01 4 162307750 162307750 G T FSTL5 Intron 0.93 TCGA-DM-A1DA-01 4 183721226 183721226 C T TENM3 Missense_Mutation p.R2608C 0.90 deleterious(0) possibly_damaging(0.876) TCGA-DM-A1DA-01 4 2240538 2240538 T C HAUS3 Missense_Mutation p.K381R 0.91 deleterious(0.01) benign(0.421) TCGA-DM-A1DA-01 4 5170059 5170059 A T STK32B Missense_Mutation p.M48L 0.92 tolerated(0.15) probably_damaging(0.963) TCGA-DM-A1DA-01 4 57302354 57302354 A G PAICS 5'UTR 0.81 TCGA-DM-A1DA-01 4 77084441 77084441 C G SCARB2 Silent p.L445L 0.89 TCGA-DM-A1DA-01 4 96035974 96035974 G T BMPR1B Splice_Site p.X112_splice 0.87 TCGA-DM-A1DA-01 5 112174437 112174437 G A APC Nonsense_Mutation p.W1049* 0.47 TCGA-DM-A1DA-01 5 112175513 112175513 G T APC Nonsense_Mutation p.E1408* 0.43 TCGA-DM-A1DA-01 5 112312657 112312657 C T DCP2 Silent p.P9P 0.50 TCGA-DM-A1DA-01 5 132197320 132197320 C T GDF9 Silent p.E442E 0.37 TCGA-DM-A1DA-01 5 135561022 135561022 G C TRPC7 Silent p.G761G 0.45 TCGA-DM-A1DA-01 5 139216820 139216820 G T PSD2 Missense_Mutation p.Q554H 0.44 tolerated(0.14) probably_damaging(0.999) TCGA-DM-A1DA-01 5 140166269 140166269 G A PCDHA1 Missense_Mutation p.V132I 0.44 tolerated_low_confidence(0.1) benign(0.003) TCGA-DM-A1DA-01 5 140514943 140514943 G A PCDHB5 5'UTR 0.39 TCGA-DM-A1DA-01 5 140720635 140720635 G A PCDHGA2 Silent p.A699A 0.51 TCGA-DM-A1DA-01 5 140810505 140810505 C T PCDHGA12 Missense_Mutation p.A60V 0.51 tolerated_low_confidence(0.06) benign(0.056) TCGA-DM-A1DA-01 5 140869772 140869772 C G PCDHGC5 Missense_Mutation p.A322G 0.45 deleterious(0.01) probably_damaging(0.957) TCGA-DM-A1DA-01 5 143586836 143586836 C T KCTD16 Missense_Mutation p.R187W 0.27 deleterious(0) probably_damaging(0.953) TCGA-DM-A1DA-01 5 149754959 149754959 C A TCOF1 Missense_Mutation p.P516T 0.39 tolerated(0.1) benign(0.042) TCGA-DM-A1DA-01 5 150481007 150481007 C G ANXA6 3'UTR 0.41 TCGA-DM-A1DA-01 5 150901014 150901014 C T FAT2 Missense_Mutation p.V3714M 0.36 probably_damaging(0.945) TCGA-DM-A1DA-01 5 156533911 156533911 T C HAVCR2 Missense_Mutation p.T41A 0.44 tolerated(0.1) benign(0.003) TCGA-DM-A1DA-01 5 16701747 16701747 C T MYO10 Silent p.L919L 0.56 TCGA-DM-A1DA-01 5 169677751 169677751 C G LCP2 Missense_Mutation p.G488R 0.50 deleterious(0) probably_damaging(0.986) TCGA-DM-A1DA-01 5 176016554 176016554 G T CDHR2 Missense_Mutation p.R1048L 0.44 deleterious(0.01) benign(0.338) TCGA-DM-A1DA-01 5 19520772 19520772 A T CDH18 Silent p.P502P 0.55 TCGA-DM-A1DA-01 5 32089315 32089315 C A PDZD2 Missense_Mutation p.Q1921K 0.47 tolerated(0.07) benign(0.214) TCGA-DM-A1DA-01 5 40998713 40998713 C T MROH2B Splice_Site p.X1551_splice 0.54 TCGA-DM-A1DA-01 5 71495025 71495025 G A MAP1B Missense_Mutation p.R1948Q 0.32 benign(0.055) TCGA-DM-A1DA-01 5 79089359 79089359 C A CMYA5 Silent p.S3963S 0.51 TCGA-DM-A1DA-01 5 82836329 82836329 A G VCAN Missense_Mutation p.T2503A 0.44 tolerated(0.12) benign(0.008) TCGA-DM-A1DA-01 6 127796567 127796567 G A SOGA3 Silent p.H868H 0.92 TCGA-DM-A1DA-01 6 159399330 159399330 G T RSPH3 Missense_Mutation p.T445N 0.94 tolerated(0.15) benign(0.06) TCGA-DM-A1DA-01 6 16328229 16328229 C T ATXN1 Missense_Mutation p.A105T 0.98 deleterious(0.02) benign(0.054) TCGA-DM-A1DA-01 6 31912003 31912003 G C CFB Missense_Mutation p.E481D 0.90 tolerated(0.11) benign(0.164) TCGA-DM-A1DA-01 6 33156848 33156848 C A COL11A2 Missense_Mutation p.G117V 0.94 possibly_damaging(0.903) TCGA-DM-A1DA-01 6 41606487 41606487 G A MDFI 5'UTR 0.90 TCGA-DM-A1DA-01 6 43189023 43189023 G C CUL9 Missense_Mutation p.C2239S 0.92 deleterious(0) probably_damaging(0.994) TCGA-DM-A1DA-01 6 52705591 52705591 G A GSTA5 Silent p.L7L 0.90 TCGA-DM-A1DA-01 6 62390958 62390958 T G KHDRBS2 Missense_Mutation p.E320D 0.90 tolerated(0.99) benign(0.079) TCGA-DM-A1DA-01 6 65300742 65300742 G A EYS Missense_Mutation p.T1673I 0.91 tolerated_low_confidence(0.07) probably_damaging(0.958) TCGA-DM-A1DA-01 6 70500453 70500453 T G LMBRD1 Intron 0.35 TCGA-DM-A1DA-01 6 79770437 79770437 T C PHIP Silent p.G96G 0.90 TCGA-DM-A1DA-01 6 93969144 93969144 T C EPHA7 Missense_Mutation p.N618D 0.27 tolerated(0.13) benign(0.038) TCGA-DM-A1DA-01 6 96663375 96663375 C T FUT9 3'UTR 0.94 TCGA-DM-A1DA-01 7 116395428 116395428 C G MET Missense_Mutation p.P574R 0.28 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DA-01 7 117422925 117422925 C T CTTNBP2 Missense_Mutation p.G788E 0.29 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DA-01 7 119915530 119915530 A C KCND2 Missense_Mutation p.N282H 0.31 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DA-01 7 127670304 127670304 C A LRRC4 Silent p.L130L 0.12 TCGA-DM-A1DA-01 7 128486398 128486398 C T FLNC Silent p.P1336P 0.32 TCGA-DM-A1DA-01 7 135418839 135418839 G A FAM180A Missense_Mutation p.R136C 0.94 deleterious(0) probably_damaging(0.998) TCGA-DM-A1DA-01 7 140453193 140453193 T A BRAF Missense_Mutation p.N581I 0.70 deleterious(0) probably_damaging(0.99) TCGA-DM-A1DA-01 7 141754631 141754631 G A MGAM Silent p.E1079E 0.25 TCGA-DM-A1DA-01 7 142640665 142640665 C G KEL Missense_Mutation p.W537C 0.33 deleterious(0) probably_damaging(0.993) TCGA-DM-A1DA-01 7 148700318 148700318 C A PDIA4 3'UTR 0.22 TCGA-DM-A1DA-01 7 149171842 149171842 G A ZNF746 Missense_Mutation p.A524V 0.30 deleterious(0.01) benign(0.275) TCGA-DM-A1DA-01 7 150417988 150417988 C T GIMAP1 Missense_Mutation p.A299V 0.31 tolerated_low_confidence(0.2) benign(0.002) TCGA-DM-A1DA-01 7 150771882 150771882 G A SLC4A2 Missense_Mutation p.A1001T 0.26 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 7 158828663 158828663 C G VIPR2 Missense_Mutation p.R263S 0.24 deleterious(0) benign(0.306) TCGA-DM-A1DA-01 7 21751354 21751354 C T DNAH11 Missense_Mutation p.R2294C 0.30 probably_damaging(0.999) TCGA-DM-A1DA-01 7 25194779 25194779 G T C7orf31 Missense_Mutation p.P149H 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-DM-A1DA-01 7 43360342 43360342 G A HECW1 Splice_Site p.X154_splice 0.28 TCGA-DM-A1DA-01 7 44153501 44153501 G A AEBP1 Missense_Mutation p.A1040T 0.22 tolerated_low_confidence(0.24) benign(0) TCGA-DM-A1DA-01 7 72685595 72685595 G A GTF2IRD2P1 RNA 0.87 TCGA-DM-A1DA-01 7 80387735 80387735 T C SEMA3C Missense_Mutation p.T519A 0.27 tolerated(0.18) benign(0) TCGA-DM-A1DA-01 7 92219648 92219648 G A FAM133B 5'UTR 0.92 TCGA-DM-A1DA-01 7 99123970 99123970 G A ZKSCAN5 Missense_Mutation p.G436E 0.43 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 7 99936399 99936399 G T PILRB 5'UTR 0.23 TCGA-DM-A1DA-01 8 105263382 105263382 A G RIMS2 Silent p.K1274K 0.26 TCGA-DM-A1DA-01 8 113267636 113267636 C A CSMD3 Missense_Mutation p.G3295C 0.19 deleterious(0) probably_damaging(0.971) TCGA-DM-A1DA-01 8 119391894 119391894 C T SAMD12 Missense_Mutation p.G123E 0.54 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 8 143695273 143695273 G T ARC Missense_Mutation p.F120L 0.29 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-DM-A1DA-01 8 143747256 143747256 C T JRK RNA 0.43 TCGA-DM-A1DA-01 8 143961153 143961153 G A CYP11B1 Missense_Mutation p.T26M 0.33 deleterious(0) benign(0.304) TCGA-DM-A1DA-01 8 144732299 144732299 G T ZNF623 Missense_Mutation p.W86L 0.26 tolerated(0.1) possibly_damaging(0.901) TCGA-DM-A1DA-01 8 144776527 144776527 C T ZNF707 Missense_Mutation p.P315S 0.22 deleterious(0.01) probably_damaging(1) TCGA-DM-A1DA-01 8 21829420 21829420 A G XPO7 Missense_Mutation p.I154V 0.28 deleterious(0.01) benign(0.211) TCGA-DM-A1DA-01 8 24358398 24358398 C T ADAM7 Nonsense_Mutation p.Q700* 0.28 TCGA-DM-A1DA-01 8 28574884 28574884 C T EXTL3 Silent p.P436P 0.33 TCGA-DM-A1DA-01 8 29990079 29990079 C T MBOAT4 Missense_Mutation p.A230T 0.29 tolerated(0.3) benign(0.009) TCGA-DM-A1DA-01 8 39467066 39467066 A T ADAM18 Silent p.I110I 0.28 TCGA-DM-A1DA-01 8 39792579 39792579 T A IDO2 5'UTR 0.24 TCGA-DM-A1DA-01 8 39792580 39792580 T A IDO2 5'UTR 0.25 TCGA-DM-A1DA-01 8 53852857 53852857 G T NPBWR1 Missense_Mutation p.M130I 0.17 deleterious(0) possibly_damaging(0.625) TCGA-DM-A1DA-01 8 57358407 57358407 G A PENK Missense_Mutation p.R36C 0.28 deleterious(0) probably_damaging(0.932) TCGA-DM-A1DA-01 8 59060423 59060423 T G FAM110B 3'UTR 0.41 TCGA-DM-A1DA-01 8 65494701 65494701 G T BHLHE22 3'UTR 0.40 TCGA-DM-A1DA-01 8 81412201 81412201 G A ZBTB10 Missense_Mutation p.R482K 0.36 deleterious(0.05) possibly_damaging(0.771) TCGA-DM-A1DA-01 8 81430747 81430747 T C ZBTB10 Silent p.G690G 0.51 TCGA-DM-A1DA-01 8 9605703 9605703 C T TNKS Missense_Mutation p.T938M 0.08 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 8 97172977 97172977 G T GDF6 5'UTR 0.26 TCGA-DM-A1DA-01 9 100617692 100617692 G A FOXE1 3'UTR 0.60 TCGA-DM-A1DA-01 9 101533311 101533311 A C ANKS6 Silent p.V613V 0.63 TCGA-DM-A1DA-01 9 104071715 104071715 T G LPPR1 Missense_Mutation p.L203R 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 9 104499852 104499852 C T GRIN3A Missense_Mutation p.R137H 0.35 deleterious(0.03) probably_damaging(0.912) TCGA-DM-A1DA-01 9 113563164 113563164 C T MUSK Missense_Mutation p.R836C 0.64 deleterious(0) probably_damaging(1) TCGA-DM-A1DA-01 9 116034721 116034721 G A CDC26 Nonsense_Mutation p.R23* 0.15 TCGA-DM-A1DA-01 9 117405736 117405736 G T C9orf91 3'UTR 0.58 TCGA-DM-A1DA-01 9 119567953 119567953 G T ASTN2 Missense_Mutation p.T734N 0.67 deleterious(0) unknown(0) TCGA-DM-A1DA-01 9 123753469 123753469 C A C5 Nonsense_Mutation p.G981* 0.58 TCGA-DM-A1DA-01 9 130707164 130707164 A G FAM102A Missense_Mutation p.S311P 0.42 deleterious(0.01) benign(0.03) TCGA-DM-A1DA-01 9 131760508 131760508 G A NUP188 Splice_Site p.X1143_splice 0.22 TCGA-DM-A1DA-01 9 135458361 135458361 G T BARHL1 Missense_Mutation p.L59F 0.62 deleterious_low_confidence(0.01) benign(0.11) TCGA-DM-A1DA-01 9 139741651 139741651 G A C9orf172 Missense_Mutation p.E929K 0.59 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DA-01 9 139747579 139747579 C A MAMDC4 Silent p.V24V 0.59 TCGA-DM-A1DA-01 9 140784877 140784877 G A CACNA1B Intron 0.44 TCGA-DM-A1DA-01 9 2115894 2115894 G A SMARCA2 Missense_Mutation p.V1177M 0.29 possibly_damaging(0.623) TCGA-DM-A1DA-01 9 21305245 21305245 G C IFNA5 Missense_Mutation p.P4R 0.31 deleterious(0.04) possibly_damaging(0.526) TCGA-DM-A1DA-01 9 34710049 34710049 C T CCL21 Silent p.L5L 0.68 TCGA-DM-A1DA-01 9 34834545 34834545 G A FAM205B RNA 0.21 TCGA-DM-A1DA-01 9 37002659 37002659 C T PAX5 Missense_Mutation p.R197H 0.34 deleterious(0) probably_damaging(0.953) TCGA-DM-A1DA-01 9 37746351 37746351 G A FRMPD1 Missense_Mutation p.G1441E 0.38 tolerated(0.08) benign(0.172) TCGA-DM-A1DA-01 9 5164084 5164084 G T INSL6 Silent p.T157T 0.56 TCGA-DM-A1DA-01 9 5534804 5534804 A T PDCD1LG2 Missense_Mutation p.T39S 0.56 tolerated(0.11) benign(0.091) TCGA-DM-A1DA-01 9 95846979 95846979 G T SUSD3 Missense_Mutation p.G240W 0.55 tolerated_low_confidence(0.28) benign(0.007) TCGA-DM-A1DA-01 9 96715186 96715186 C T BARX1 Silent p.T169T 0.68 TCGA-DM-A1DA-01 X 103420329 103420329 A C FAM199X Missense_Mutation p.S75R 0.42 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DM-A1DA-01 X 117959541 117959541 G T ZCCHC12 Missense_Mutation p.D112Y 0.41 deleterious(0) probably_damaging(0.971) TCGA-DM-A1DA-01 X 119005318 119005318 C T RNF113A Missense_Mutation p.E87K 0.48 tolerated(0.22) benign(0.19) TCGA-DM-A1DA-01 X 127185795 127185795 T C ACTRT1 Missense_Mutation p.S131G 0.19 tolerated(0.12) benign(0.04) TCGA-DM-A1DA-01 X 129149725 129149725 C T BCORL1 Missense_Mutation p.H993Y 0.47 probably_damaging(0.959) TCGA-DM-A1DA-01 X 135429016 135429016 G A GPR112 Missense_Mutation p.V1051I 0.07 tolerated(0.43) benign(0.012) TCGA-DM-A1DA-01 X 136649488 136649488 G A ZIC3 Missense_Mutation p.G213D 0.36 tolerated(0.1) benign(0.005) TCGA-DM-A1DA-01 X 140786628 140786628 G A SPANXD 5'UTR 0.31 TCGA-DM-A1DA-01 X 141290946 141290946 T G MAGEC2 Missense_Mutation p.K276N 0.54 tolerated(0.06) benign(0.145) TCGA-DM-A1DA-01 X 151284158 151284158 T G RP11-1007I13.4 RNA 0.44 TCGA-DM-A1DA-01 X 151869901 151869901 C G MAGEA6 Silent p.P197P 0.36 TCGA-DM-A1DA-01 X 153030940 153030940 G A PLXNB3 5'UTR 0.51 TCGA-DM-A1DA-01 X 153175378 153175378 T C ARHGAP4 Missense_Mutation p.D784G 0.43 tolerated(0.14) benign(0.005) TCGA-DM-A1DA-01 X 21675080 21675080 C T KLHL34 Missense_Mutation p.R276Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-DM-A1DA-01 X 2823203 2823203 C T ARSD 3'UTR 0.56 TCGA-DM-A1DA-01 X 2856217 2856217 C T ARSE Missense_Mutation p.R403Q 0.43 tolerated(0.46) benign(0.328) TCGA-DM-A1DA-01 X 48370836 48370836 G A PORCN Missense_Mutation p.V166I 0.43 tolerated(1) benign(0.006) TCGA-DM-A1DA-01 X 48924774 48924774 G A CCDC120 Missense_Mutation p.R340Q 0.48 tolerated(0.33) possibly_damaging(0.837) TCGA-DM-A1DA-01 X 53406810 53406810 C T SMC1A 3'UTR 0.30 TCGA-DM-A1DA-01 X 53564590 53564590 G A HUWE1 Missense_Mutation p.R4022C 0.37 unknown(0) TCGA-DM-A1DA-01 X 54835769 54835769 C G MAGED2 Missense_Mutation p.S2C 0.55 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DM-A1DA-01 X 83128924 83128924 T G CYLC1 Missense_Mutation p.I403S 0.45 tolerated(0.63) unknown(0) TCGA-DM-A1DA-01 X 9912866 9912866 G A SHROOM2 Silent p.V1499V 0.45 TCGA-DM-A1DA-01 X 99839996 99839996 G A TNMD 5'UTR 0.46 TCGA-DM-A1DB-01 10 134598436 134598436 G A NKX6-2 Missense_Mutation p.A273V 0.39 deleterious_low_confidence(0.04) benign(0.303) TCGA-DM-A1DB-01 10 73558989 73558989 C T CDH23 Silent p.I152I 0.38 TCGA-DM-A1DB-01 11 111789494 111789494 G A HSPB2 3'Flank 0.50 TCGA-DM-A1DB-01 11 20066701 20066701 C T NAV2 Silent p.A1152A 0.41 TCGA-DM-A1DB-01 11 280109 280109 C T NLRP6 Silent p.H125H 0.59 TCGA-DM-A1DB-01 11 405885 405886 TG - SIGIRR 3'UTR 0.44 TCGA-DM-A1DB-01 11 57116175 57116175 A G P2RX3 Missense_Mutation p.E187G 0.10 deleterious(0) possibly_damaging(0.507) TCGA-DM-A1DB-01 11 59939503 59939504 - T MS4A6A 3'Flank 0.50 TCGA-DM-A1DB-01 11 92534288 92534288 G A FAT3 Silent p.T2703T 0.30 TCGA-DM-A1DB-01 11 92917682 92917682 C A SLC36A4 Missense_Mutation p.V62L 0.27 tolerated(0.37) benign(0.002) TCGA-DM-A1DB-01 12 11214758 11214758 G C TAS2R46 Missense_Mutation p.Q46E 0.29 tolerated(0.07) benign(0.297) TCGA-DM-A1DB-01 12 117768963 117768963 T A NOS1 5'Flank 0.80 TCGA-DM-A1DB-01 12 132250716 132250716 C T SFSWAP Nonsense_Mutation p.Q669* 0.08 TCGA-DM-A1DB-01 12 20803400 20803400 G C PDE3A Missense_Mutation p.D931H 0.24 deleterious(0) probably_damaging(0.99) TCGA-DM-A1DB-01 12 96077313 96077313 G A NTN4 Missense_Mutation p.A452V 0.32 tolerated(0.06) benign(0.135) TCGA-DM-A1DB-01 13 21751823 21751823 A G MRP63 3'UTR 0.34 TCGA-DM-A1DB-01 13 37524046 37524046 A G ALG5 3'UTR 0.08 TCGA-DM-A1DB-01 14 74753167 74753167 T C ABCD4 Silent p.E606E 0.09 TCGA-DM-A1DB-01 15 87097660 87097660 G A AGBL1 Silent p.E916E 0.55 TCGA-DM-A1DB-01 16 31885087 31885087 G A ZNF267 5'UTR 0.22 TCGA-DM-A1DB-01 16 55601587 55601587 A C CAPNS2 3'UTR 0.43 TCGA-DM-A1DB-01 16 81991693 81991693 G A PLCG2 3'UTR 0.34 TCGA-DM-A1DB-01 16 9858292 9858292 C T GRIN2A Missense_Mutation p.A1037T 0.40 tolerated(0.57) benign(0.077) TCGA-DM-A1DB-01 17 10304431 10304431 G C MYH8 Silent p.L1062L 0.69 TCGA-DM-A1DB-01 17 33513360 33513360 G A UNC45B Missense_Mutation p.D860N 0.60 tolerated(0.07) benign(0.048) TCGA-DM-A1DB-01 17 34854105 34854105 C T MYO19 Intron 0.64 TCGA-DM-A1DB-01 17 42931929 42931929 A G EFTUD2 Missense_Mutation p.S752P 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-DM-A1DB-01 17 48145472 48145472 G T ITGA3 Missense_Mutation p.R156L 0.46 deleterious(0.02) possibly_damaging(0.492) TCGA-DM-A1DB-01 17 48545965 48545965 C T CHAD Silent p.S70S 0.36 TCGA-DM-A1DB-01 17 63533914 63533914 G A AXIN2 Missense_Mutation p.R414W 0.13 deleterious(0.02) probably_damaging(0.921) TCGA-DM-A1DB-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.69 deleterious(0) probably_damaging(1) TCGA-DM-A1DB-01 18 47809102 47809102 T C CXXC1 Missense_Mutation p.K615R 0.14 tolerated(0.05) probably_damaging(0.981) TCGA-DM-A1DB-01 19 10610686 10610686 G A KEAP1 Silent p.S8S 0.30 TCGA-DM-A1DB-01 19 2115238 2115238 C T AP3D1 Missense_Mutation p.V777I 0.42 tolerated(0.48) benign(0.003) TCGA-DM-A1DB-01 19 38384345 38384345 G A WDR87 Silent p.N627N 0.43 TCGA-DM-A1DB-01 19 53995082 53995082 T C ZNF813 Silent p.F532F 0.42 TCGA-DM-A1DB-01 19 58152444 58152444 A G ZNF211 Missense_Mutation p.N262S 0.46 tolerated(1) benign(0.007) TCGA-DM-A1DB-01 19 648885 648885 C T RNF126 Missense_Mutation p.V223I 0.35 deleterious(0.03) benign(0.244) TCGA-DM-A1DB-01 19 7132285 7132285 C T INSR Missense_Mutation p.R909Q 0.33 tolerated(0.42) benign(0.002) TCGA-DM-A1DB-01 1 111824325 111824325 G A CHIAP2 RNA 0.27 TCGA-DM-A1DB-01 1 149901547 149901547 G A MTMR11 Missense_Mutation p.R637C 0.31 deleterious(0) probably_damaging(0.965) TCGA-DM-A1DB-01 1 152276912 152276912 T G FLG Missense_Mutation p.S3484R 0.39 unknown(0) TCGA-DM-A1DB-01 1 152732728 152732728 C T KPRP Missense_Mutation p.R222W 0.44 deleterious(0) benign(0.401) TCGA-DM-A1DB-01 1 184703759 184703759 C T EDEM3 Missense_Mutation p.E122K 0.38 deleterious(0.04) probably_damaging(0.919) TCGA-DM-A1DB-01 1 19652799 19652799 T C PQLC2 Missense_Mutation p.L148P 0.16 deleterious(0.02) benign(0.009) TCGA-DM-A1DB-01 1 214504392 214504392 C T SMYD2 Missense_Mutation p.R306W 0.51 deleterious(0.04) benign(0.005) TCGA-DM-A1DB-01 1 237205831 237205831 G T RYR2 Missense_Mutation p.G4W 0.09 probably_damaging(0.965) TCGA-DM-A1DB-01 1 237550598 237550598 C T RYR2 Silent p.N198N 0.37 TCGA-DM-A1DB-01 1 248436234 248436234 C A OR2T33 Missense_Mutation p.V295L 0.45 deleterious(0) possibly_damaging(0.696) TCGA-DM-A1DB-01 1 41483438 41483438 G A SLFNL1 Missense_Mutation p.R276C 0.44 deleterious(0) possibly_damaging(0.893) TCGA-DM-A1DB-01 1 94522185 94522185 C T ABCA4 Missense_Mutation p.R785H 0.65 tolerated(0.47) benign(0.066) TCGA-DM-A1DB-01 20 43108904 43108904 A G TTPAL Missense_Mutation p.K89E 0.16 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DB-01 20 49366237 49366239 AAG - PARD6B In_Frame_Del p.K113del 0.13 TCGA-DM-A1DB-01 20 54824819 54824819 G A MC3R Missense_Mutation p.R307H 0.17 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DB-01 20 8705305 8705305 G T PLCB1 Silent p.G528G 0.24 TCGA-DM-A1DB-01 22 50315265 50315265 G A CRELD2 Missense_Mutation p.G150R 0.33 deleterious(0) probably_damaging(0.998) TCGA-DM-A1DB-01 2 131673396 131673396 G A ARHGEF4 5'Flank 0.85 TCGA-DM-A1DB-01 2 179424907 179424907 A G TTN Missense_Mutation p.L28651P 0.38 TCGA-DM-A1DB-01 2 179528012 179528012 C T TTN Silent p.P12227P 0.41 TCGA-DM-A1DB-01 2 182766903 182766903 G C SSFA2 Missense_Mutation p.D375H 0.44 tolerated(0.08) benign(0.036) TCGA-DM-A1DB-01 2 73868689 73868689 G A NAT8 Missense_Mutation p.R23W 0.35 deleterious(0.04) possibly_damaging(0.462) TCGA-DM-A1DB-01 3 48696383 48696383 G A CELSR3 Nonsense_Mutation p.R1229* 0.38 TCGA-DM-A1DB-01 4 103189052 103189052 C T SLC39A8 Missense_Mutation p.C342Y 0.09 deleterious(0) probably_damaging(1) TCGA-DM-A1DB-01 4 1379746 1379746 C G UVSSA Missense_Mutation p.N709K 0.32 deleterious(0.02) possibly_damaging(0.703) TCGA-DM-A1DB-01 4 5731073 5731073 G A EVC Missense_Mutation p.A114T 0.08 deleterious(0) probably_damaging(0.998) TCGA-DM-A1DB-01 5 112164616 112164616 C T APC Nonsense_Mutation p.R564* 0.75 TCGA-DM-A1DB-01 5 140557679 140557679 G C PCDHB8 Missense_Mutation p.G22R 0.56 tolerated_low_confidence(0.32) benign(0.014) TCGA-DM-A1DB-01 5 140594995 140594995 C T PCDHB13 Nonsense_Mutation p.Q434* 0.54 TCGA-DM-A1DB-01 5 158588427 158588427 G A RNF145 Silent p.F521F 0.71 TCGA-DM-A1DB-01 5 179016566 179016566 G T RUFY1 Missense_Mutation p.R349L 0.75 deleterious(0.01) benign(0.436) TCGA-DM-A1DB-01 5 67591239 67591250 GTTTTTCAGGTG - PIK3R1 Splice_Site p.X582_splice 0.56 TCGA-DM-A1DB-01 6 152763310 152763310 T C SYNE1 Missense_Mutation p.E1303G 0.43 benign(0.113) TCGA-DM-A1DB-01 6 26032069 26032069 C G HIST1H3B Missense_Mutation p.E74Q 0.31 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-DM-A1DB-01 6 27107253 27107253 C T HIST1H4I Missense_Mutation p.R56C 0.38 deleterious(0.04) probably_damaging(0.931) TCGA-DM-A1DB-01 6 31654851 31654851 A G ABHD16A 3'UTR 0.10 TCGA-DM-A1DB-01 6 49806217 49806217 C G CRISP1 Missense_Mutation p.K185N 0.29 tolerated(0.11) benign(0.135) TCGA-DM-A1DB-01 6 51732827 51732827 T C PKHD1 Missense_Mutation p.I2523V 0.29 tolerated(0.35) benign(0.02) TCGA-DM-A1DB-01 6 72975681 72975681 T C RIMS1 Silent p.L1109L 0.08 TCGA-DM-A1DB-01 6 96659452 96659452 A G FUT9 3'UTR 0.31 TCGA-DM-A1DB-01 7 100276356 100276356 G A GNB2 Missense_Mutation p.G319R 0.33 tolerated(0.33) probably_damaging(0.937) TCGA-DM-A1DB-01 7 1015194 1015194 G A COX19 5'UTR 0.60 TCGA-DM-A1DB-01 7 134223027 134223027 C A AKR1B10 Missense_Mutation p.Q275K 0.24 tolerated(0.42) benign(0.078) TCGA-DM-A1DB-01 7 150710874 150710874 C T NOS3 Silent p.L1106L 0.66 TCGA-DM-A1DB-01 8 110986363 110986363 G A KCNV1 Silent p.P85P 0.62 TCGA-DM-A1DB-01 8 128429195 128429195 G A POU5F1B 3'UTR 0.55 TCGA-DM-A1DB-01 8 135545214 135545214 G T ZFAT Missense_Mutation p.P993H 0.24 deleterious(0) probably_damaging(0.999) TCGA-DM-A1DB-01 8 61729020 61729020 G A CHD7 Missense_Mutation p.R858Q 0.30 probably_damaging(0.986) TCGA-DM-A1DB-01 8 70667714 70667714 G A SLCO5A1 Silent p.N401N 0.61 TCGA-DM-A1DB-01 9 104079773 104079773 G T LPPR1 Missense_Mutation p.A314S 0.33 tolerated(0.37) probably_damaging(0.985) TCGA-DM-A1DB-01 9 119738430 119738430 G T ASTN2 Missense_Mutation p.L521M 0.38 deleterious_low_confidence(0) unknown(0) TCGA-DM-A1DB-01 9 131122829 131122829 C T SLC27A4 3'UTR 0.41 TCGA-DM-A1DB-01 9 136341411 136341411 C T SLC2A6 Silent p.G170G 0.51 TCGA-DM-A1DB-01 9 16870666 16870666 A C BNC2 5'UTR 0.37 TCGA-DM-A1DB-01 9 35076791 35076791 T C FANCG Missense_Mutation p.E285G 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A1DB-01 X 102338373 102338373 C T NXF3 Missense_Mutation p.A165T 0.94 deleterious(0.02) possibly_damaging(0.817) TCGA-DM-A1DB-01 X 153133788 153133788 G A L1CAM Nonsense_Mutation p.R558* 0.29 TCGA-DM-A1DB-01 X 8433377 8433377 C A VCX3B 5'UTR 0.60 TCGA-DM-A1HA-01 10 112559646 112559646 G T RBM20 Missense_Mutation p.M590I 0.85 deleterious(0) probably_damaging(0.989) TCGA-DM-A1HA-01 10 134942526 134942526 C T GPR123 Silent p.H398H 0.92 TCGA-DM-A1HA-01 10 135438980 135438980 C A FRG2B Missense_Mutation p.G154W 0.91 deleterious(0) probably_damaging(0.996) TCGA-DM-A1HA-01 10 20465933 20465933 C T PLXDC2 Nonsense_Mutation p.R297* 0.41 TCGA-DM-A1HA-01 10 29752450 29752450 G A SVIL Missense_Mutation p.A2083V 0.15 deleterious(0) possibly_damaging(0.7) TCGA-DM-A1HA-01 10 332215 332215 C T DIP2C Missense_Mutation p.E1373K 0.57 deleterious(0) benign(0.389) TCGA-DM-A1HA-01 10 43701455 43701455 T C RASGEF1A Missense_Mutation p.D37G 0.52 tolerated(0.6) benign(0.009) TCGA-DM-A1HA-01 10 70931022 70931022 G A VPS26A Missense_Mutation p.M327I 0.24 tolerated_low_confidence(0.08) benign(0) TCGA-DM-A1HA-01 10 81146067 81146067 C T ZCCHC24 3'UTR 0.70 TCGA-DM-A1HA-01 11 109295607 109295607 G T C11orf87 3'UTR 0.54 TCGA-DM-A1HA-01 11 120201320 120201320 G A TMEM136 3'UTR 0.57 TCGA-DM-A1HA-01 11 123813686 123813686 G C OR6T1 Missense_Mutation p.P287R 0.45 deleterious(0) probably_damaging(0.988) TCGA-DM-A1HA-01 11 133795761 133795761 G A IGSF9B Missense_Mutation p.P636L 0.47 tolerated(0.05) possibly_damaging(0.703) TCGA-DM-A1HA-01 11 18636944 18636944 C T SPTY2D1 Missense_Mutation p.G293S 0.45 tolerated(0.25) possibly_damaging(0.855) TCGA-DM-A1HA-01 11 18636962 18636962 T A SPTY2D1 Missense_Mutation p.R287W 0.48 deleterious(0) possibly_damaging(0.675) TCGA-DM-A1HA-01 11 20070511 20070511 C T NAV2 Silent p.N1403N 0.54 TCGA-DM-A1HA-01 11 32460466 32460466 G A WT1 5'Flank 0.35 TCGA-DM-A1HA-01 11 46920939 46920939 A G LRP4 Silent p.C182C 0.14 TCGA-DM-A1HA-01 11 5269644 5269644 G A HBG1 Missense_Mutation p.S130F 0.34 deleterious(0) possibly_damaging(0.757) TCGA-DM-A1HA-01 11 55065672 55065672 G T TRIM51HP RNA 0.47 TCGA-DM-A1HA-01 11 6416865 6416865 C A APBB1 Missense_Mutation p.A676S 0.46 tolerated(0.21) possibly_damaging(0.819) TCGA-DM-A1HA-01 11 65113743 65113743 C T DPF2 Silent p.T310T 0.46 TCGA-DM-A1HA-01 11 6559929 6559929 G A DNHD1 Missense_Mutation p.V1072M 0.50 probably_damaging(1) TCGA-DM-A1HA-01 11 73824892 73824892 G A C2CD3 Silent p.S592S 0.52 TCGA-DM-A1HA-01 11 89075320 89075320 G A NOX4 Missense_Mutation p.S420L 0.47 tolerated(0.12) benign(0.094) TCGA-DM-A1HA-01 12 110565259 110565259 C T IFT81 Missense_Mutation p.T25M 0.94 deleterious(0.03) probably_damaging(0.939) TCGA-DM-A1HA-01 12 120110206 120110206 G A PRKAB1 Missense_Mutation p.G87D 0.90 deleterious(0.05) benign(0.003) TCGA-DM-A1HA-01 12 121707356 121707356 T G CAMKK2 Missense_Mutation p.Y183S 0.26 deleterious(0.02) benign(0.071) TCGA-DM-A1HA-01 12 121757587 121757587 T C ANAPC5 Missense_Mutation p.D517G 0.96 tolerated(0.13) benign(0.001) TCGA-DM-A1HA-01 12 123026647 123026647 A T KNTC1 Missense_Mutation p.N166Y 0.45 tolerated(0.14) probably_damaging(0.994) TCGA-DM-A1HA-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.95 deleterious(0.04) probably_damaging(0.993) TCGA-DM-A1HA-01 12 8078478 8078478 C T SLC2A3 Missense_Mutation p.G310S 0.11 deleterious(0.03) probably_damaging(0.927) TCGA-DM-A1HA-01 12 81671094 81671094 A T PPFIA2 Splice_Site p.X1104_splice 0.96 TCGA-DM-A1HA-01 13 108922206 108922206 A G TNFSF13B 5'UTR 0.37 TCGA-DM-A1HA-01 13 42306245 42306245 C T VWA8 Missense_Mutation p.G825R 0.45 deleterious(0) probably_damaging(0.967) TCGA-DM-A1HA-01 13 46425638 46425638 T A SIAH3 Missense_Mutation p.N43Y 0.49 deleterious_low_confidence(0.01) benign(0.125) TCGA-DM-A1HA-01 13 47409001 47409001 C T HTR2A Missense_Mutation p.G463R 0.50 tolerated(0.53) benign(0.009) TCGA-DM-A1HA-01 14 58917458 58917458 C T KIAA0586 Missense_Mutation p.H428Y 0.39 tolerated(0.54) benign(0.011) TCGA-DM-A1HA-01 15 21071313 21071313 G A POTEB2 Nonsense_Mutation p.R100* 0.31 TCGA-DM-A1HA-01 15 24922064 24922064 G C NPAP1 Missense_Mutation p.E350D 0.75 tolerated(0.37) possibly_damaging(0.45) TCGA-DM-A1HA-01 15 38810497 38810497 G C RASGRP1 Missense_Mutation p.Q173E 0.90 tolerated(0.26) benign(0.148) TCGA-DM-A1HA-01 15 41011044 41011044 C T RAD51 Silent p.Y160Y 0.95 TCGA-DM-A1HA-01 16 55725948 55725948 G A SLC6A2 Missense_Mutation p.R301H 0.48 tolerated(0.07) benign(0.327) TCGA-DM-A1HA-01 16 74442903 74442903 C T CLEC18B 3'UTR 0.14 TCGA-DM-A1HA-01 16 88898412 88898412 T C GALNS Silent p.A332A 0.52 TCGA-DM-A1HA-01 17 20910275 20910275 C T USP22 Missense_Mutation p.R419Q 0.53 deleterious(0.04) possibly_damaging(0.625) TCGA-DM-A1HA-01 17 37885653 37885653 G C MIEN1 3'UTR 0.47 TCGA-DM-A1HA-01 17 39115041 39115041 C A KRT39 Nonsense_Mutation p.E430* 0.48 TCGA-DM-A1HA-01 17 39964134 39964134 C A LEPREL4 Nonsense_Mutation p.E347* 0.56 TCGA-DM-A1HA-01 17 40485957 40485957 G A STAT3 Missense_Mutation p.P303L 0.50 deleterious(0.01) benign(0.166) TCGA-DM-A1HA-01 17 43898767 43898767 C T CRHR1 Silent p.R96R 0.47 TCGA-DM-A1HA-01 17 48647110 48647110 G T CACNA1G Missense_Mutation p.A178S 0.19 deleterious(0.04) probably_damaging(0.975) TCGA-DM-A1HA-01 17 67080459 67080459 A G ABCA6 Missense_Mutation p.V1433A 0.43 deleterious(0.01) possibly_damaging(0.898) TCGA-DM-A1HA-01 17 6927559 6927559 G T BCL6B Missense_Mutation p.A113S 0.88 tolerated(0.41) benign(0.017) TCGA-DM-A1HA-01 17 73887106 73887106 G T TRIM65 Missense_Mutation p.H436Q 0.53 deleterious(0) probably_damaging(1) TCGA-DM-A1HA-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.86 deleterious(0) probably_damaging(1) TCGA-DM-A1HA-01 17 78358916 78358916 C T RNF213 Silent p.N4800N 0.50 TCGA-DM-A1HA-01 17 78409945 78409945 C T ENDOV 3'UTR 0.32 TCGA-DM-A1HA-01 18 14797683 14797683 C G ANKRD30B Missense_Mutation p.L651V 0.93 tolerated(0.18) benign(0.08) TCGA-DM-A1HA-01 18 29340011 29340011 G A SLC25A52 Missense_Mutation p.T215M 0.95 tolerated(0.12) benign(0.04) TCGA-DM-A1HA-01 18 44173638 44173638 C T LOXHD1 Silent p.Q452Q 0.27 TCGA-DM-A1HA-01 19 12087927 12087927 G C ZNF763 Missense_Mutation p.R29S 0.42 deleterious(0) benign(0.017) TCGA-DM-A1HA-01 19 1370779 1370779 G T MUM1 Missense_Mutation p.R564L 0.77 deleterious(0) benign(0.084) TCGA-DM-A1HA-01 19 19380545 19380545 C T TM6SF2 Silent p.L145L 0.90 TCGA-DM-A1HA-01 19 2917753 2917753 G A ZNF57 Silent p.T378T 0.93 TCGA-DM-A1HA-01 19 48183977 48183977 A G GLTSCR1 Missense_Mutation p.N517S 0.47 unknown(0) TCGA-DM-A1HA-01 19 49351200 49351201 GA T PLEKHA4 Frame_Shift_Del p.S508Tfs*23 0.46 TCGA-DM-A1HA-01 19 51228700 51228700 C A CLEC11A Nonsense_Mutation p.Y316* 0.48 TCGA-DM-A1HA-01 19 52273029 52273029 T C FPR2 3'UTR 0.53 TCGA-DM-A1HA-01 19 6501536 6501536 G A TUBB4A Silent p.N52N 0.85 TCGA-DM-A1HA-01 19 8609251 8609251 G A MYO1F Missense_Mutation p.A485V 0.91 tolerated(0.22) benign(0.003) TCGA-DM-A1HA-01 1 113240696 113240696 G A MOV10 Missense_Mutation p.R760Q 0.93 deleterious(0.01) possibly_damaging(0.73) TCGA-DM-A1HA-01 1 1153924 1153924 C T SDF4 Missense_Mutation p.D276N 0.53 deleterious(0.01) probably_damaging(1) TCGA-DM-A1HA-01 1 119467434 119467434 C T TBX15 Silent p.V70V 0.54 TCGA-DM-A1HA-01 1 145539047 145539047 A T ITGA10 Missense_Mutation p.H996L 0.92 tolerated(0.12) benign(0.065) TCGA-DM-A1HA-01 1 152749165 152749165 C T LCE1F Silent p.C106C 0.48 TCGA-DM-A1HA-01 1 153005005 153005005 C A SPRR1B Missense_Mutation p.P62T 0.46 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HA-01 1 153520107 153520107 G C S100A3 3'UTR 0.43 TCGA-DM-A1HA-01 1 17266401 17266401 C T CROCC Missense_Mutation p.R541C 0.32 probably_damaging(0.994) TCGA-DM-A1HA-01 1 176563951 176563951 G A PAPPA2 Missense_Mutation p.R404H 0.53 tolerated(0.1) possibly_damaging(0.48) TCGA-DM-A1HA-01 1 196227504 196227504 G A KCNT2 Missense_Mutation p.R1011W 0.95 deleterious(0) probably_damaging(0.997) TCGA-DM-A1HA-01 1 232942231 232942231 C T MAP10 Missense_Mutation p.P488S 0.93 tolerated(0.1) benign(0.301) TCGA-DM-A1HA-01 1 2436082 2436082 G C PLCH2 3'UTR 0.49 TCGA-DM-A1HA-01 1 27630229 27630229 G A WDTC1 Missense_Mutation p.R528H 0.46 deleterious(0) probably_damaging(1) TCGA-DM-A1HA-01 1 33237879 33237879 C A KIAA1522 Silent p.V1033V 0.41 TCGA-DM-A1HA-01 1 34330145 34330145 G T HMGB4 Missense_Mutation p.W118L 0.49 tolerated(1) probably_damaging(1) TCGA-DM-A1HA-01 1 37282758 37282758 C T GRIK3 Missense_Mutation p.R665H 0.43 deleterious(0) probably_damaging(0.994) TCGA-DM-A1HA-01 1 47400780 47400780 C A CYP4A11 Missense_Mutation p.V228F 0.45 tolerated(0.38) benign(0.008) TCGA-DM-A1HA-01 1 8384575 8384575 G A SLC45A1 Silent p.P62P 0.43 TCGA-DM-A1HA-01 1 9100030 9100030 G A SLC2A5 Silent p.R238R 0.32 TCGA-DM-A1HA-01 20 13894480 13894480 G A SEL1L2 Missense_Mutation p.A166V 0.92 deleterious(0) probably_damaging(0.958) TCGA-DM-A1HA-01 20 20351400 20351403 ACAG - INSM1 3'UTR 0.26 TCGA-DM-A1HA-01 20 30414506 30414506 G T MYLK2 Silent p.L357L 0.29 TCGA-DM-A1HA-01 20 36841598 36841598 C T KIAA1755 Missense_Mutation p.R1150H 0.30 tolerated(0.16) benign(0.001) TCGA-DM-A1HA-01 20 44845516 44845516 C T CDH22 Missense_Mutation p.V263I 0.58 tolerated(0.16) benign(0.086) TCGA-DM-A1HA-01 20 45170466 45170466 C T OCSTAMP Missense_Mutation p.R383H 0.24 tolerated(0.61) benign(0.049) TCGA-DM-A1HA-01 20 4771209 4771209 C T RASSF2 Missense_Mutation p.R142H 1.00 deleterious(0) probably_damaging(0.991) TCGA-DM-A1HA-01 20 50803563 50803563 T A ZFP64 Missense_Mutation p.I32F 0.21 deleterious(0) probably_damaging(0.979) TCGA-DM-A1HA-01 20 62038619 62038619 G A KCNQ2 Missense_Mutation p.P666L 0.58 tolerated(0.24) probably_damaging(1) TCGA-DM-A1HA-01 20 62046374 62046374 G A KCNQ2 Silent p.A469A 0.62 TCGA-DM-A1HA-01 21 43162012 43162012 C T RIPK4 Silent p.E447E 0.88 TCGA-DM-A1HA-01 22 24095041 24095041 G T VPREB3 3'UTR 0.75 TCGA-DM-A1HA-01 22 24095096 24095096 G C VPREB3 Nonsense_Mutation p.Y113* 0.85 TCGA-DM-A1HA-01 22 24095206 24095206 G T VPREB3 Missense_Mutation p.H77N 0.86 deleterious(0.02) benign(0.008) TCGA-DM-A1HA-01 22 24095294 24095294 G A VPREB3 Silent p.V47V 0.95 TCGA-DM-A1HA-01 22 31529445 31529445 A G INPP5J Silent p.E427E 0.13 TCGA-DM-A1HA-01 22 32044214 32044214 C T PISD Missense_Mutation p.R65H 0.90 deleterious(0) possibly_damaging(0.889) TCGA-DM-A1HA-01 22 50885870 50885870 C T SBF1 Missense_Mutation p.D1822N 0.93 deleterious(0) possibly_damaging(0.646) TCGA-DM-A1HA-01 2 100911977 100911977 G A LONRF2 Silent p.A505A 0.49 TCGA-DM-A1HA-01 2 166740361 166740361 T C TTC21B Silent p.Q1209Q 0.52 TCGA-DM-A1HA-01 2 166847963 166847963 G A SCN1A Missense_Mutation p.T1941M 0.43 tolerated(0.6) benign(0.003) TCGA-DM-A1HA-01 2 168106667 168106667 A T XIRP2 Missense_Mutation p.Q2922L 0.46 possibly_damaging(0.804) TCGA-DM-A1HA-01 2 168996826 168996826 C T STK39 Silent p.A271A 0.47 TCGA-DM-A1HA-01 2 170151192 170151192 A C LRP2 Missense_Mutation p.C152W 0.47 probably_damaging(1) TCGA-DM-A1HA-01 2 170151193 170151193 C T LRP2 Missense_Mutation p.C152Y 0.48 probably_damaging(0.999) TCGA-DM-A1HA-01 2 179604900 179604900 C A TTN Missense_Mutation p.D4354Y 0.50 TCGA-DM-A1HA-01 2 202899686 202899686 T C FZD7 Missense_Mutation p.Y106H 0.39 deleterious(0) probably_damaging(0.987) TCGA-DM-A1HA-01 2 202964444 202964483 TCTTGGCTCCCAAGTGACAAATCCCACATTACATTCTGTG - AC079354.1 Frame_Shift_Del p.S313Efs*18 0.25 TCGA-DM-A1HA-01 2 210761128 210761128 G A UNC80 Silent p.S1458S 0.39 TCGA-DM-A1HA-01 2 220368907 220368907 T C GMPPA Missense_Mutation p.F198L 0.44 tolerated(0.05) benign(0.132) TCGA-DM-A1HA-01 2 224642475 224642475 T A AP1S3 Missense_Mutation p.I39F 0.34 deleterious(0) benign(0.355) TCGA-DM-A1HA-01 2 230453129 230453129 G T DNER Missense_Mutation p.P221T 0.44 deleterious(0.01) probably_damaging(0.962) TCGA-DM-A1HA-01 2 230456521 230456521 G C DNER Silent p.L120L 0.42 TCGA-DM-A1HA-01 2 230902229 230902229 G A SLC16A14 Missense_Mutation p.T467M 0.53 tolerated(0.05) probably_damaging(0.981) TCGA-DM-A1HA-01 2 233323598 233323598 G A ALPI Silent p.A443A 0.64 TCGA-DM-A1HA-01 2 242752414 242752414 G A NEU4 5'UTR 0.45 TCGA-DM-A1HA-01 2 43452501 43452501 G A ZFP36L2 Nonsense_Mutation p.Q148* 0.46 TCGA-DM-A1HA-01 2 72362470 72362470 G A CYP26B1 Missense_Mutation p.R170C 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-DM-A1HA-01 3 100962951 100962951 T A IMPG2 Missense_Mutation p.I742F 0.50 tolerated(1) benign(0) TCGA-DM-A1HA-01 3 10417222 10417222 G A ATP2B2 Silent p.Y436Y 0.95 TCGA-DM-A1HA-01 3 113218404 113218404 G A SPICE1 Missense_Mutation p.S58L 0.45 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HA-01 3 128181664 128181664 G A DNAJB8 Missense_Mutation p.P142L 0.47 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HA-01 3 133475800 133475800 C T TF Nonsense_Mutation p.R273* 0.49 TCGA-DM-A1HA-01 3 27233519 27233519 C T NEK10 Splice_Site p.X835_splice 0.89 TCGA-DM-A1HA-01 3 46449733 46449733 G T CCRL2 Missense_Mutation p.D67Y 0.50 tolerated(1) possibly_damaging(0.732) TCGA-DM-A1HA-01 3 53894210 53894210 G T IL17RB Missense_Mutation p.A301S 1.00 tolerated(0.11) benign(0.075) TCGA-DM-A1HA-01 3 71804132 71804132 G A GPR27 Missense_Mutation p.R311Q 0.61 tolerated(0.32) benign(0.117) TCGA-DM-A1HA-01 4 134071955 134071955 G T PCDH10 Silent p.G220G 0.53 TCGA-DM-A1HA-01 4 25420102 25420102 A T ANAPC4 3'UTR 0.32 TCGA-DM-A1HA-01 4 62383177 62383177 G A LPHN3 Intron 0.68 TCGA-DM-A1HA-01 4 68501274 68501274 C T UBA6 Missense_Mutation p.R580H 0.47 deleterious(0) probably_damaging(0.996) TCGA-DM-A1HA-01 4 72934671 72934671 G T NPFFR2 Intron 0.17 TCGA-DM-A1HA-01 4 96035972 96035972 G C BMPR1B Missense_Mutation p.R112P 0.47 deleterious(0.02) possibly_damaging(0.831) TCGA-DM-A1HA-01 5 101755555 101755555 C A SLCO6A1 Missense_Mutation p.A483S 0.41 deleterious(0) probably_damaging(0.961) TCGA-DM-A1HA-01 5 112173630 112173631 - TCCCAAGGCA APC Frame_Shift_Ins p.H785Qfs*6 0.28 TCGA-DM-A1HA-01 5 112175532 112175532 T - APC Frame_Shift_Del p.V1414Efs*5 0.36 TCGA-DM-A1HA-01 5 112770180 112770180 C A TSSK1B Missense_Mutation p.Q119H 0.46 deleterious(0) probably_damaging(0.997) TCGA-DM-A1HA-01 5 115824603 115824603 G A SEMA6A Silent p.H212H 0.44 TCGA-DM-A1HA-01 5 13770942 13770942 G A DNAH5 Missense_Mutation p.T3174M 0.50 probably_damaging(0.938) TCGA-DM-A1HA-01 5 140230133 140230133 G T PCDHA9 Missense_Mutation p.G685C 0.50 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-DM-A1HA-01 5 140744297 140744297 C T PCDHGA5 Missense_Mutation p.R134W 0.39 tolerated_low_confidence(0.18) possibly_damaging(0.676) TCGA-DM-A1HA-01 5 150947137 150947137 G T FAT2 Missense_Mutation p.N452K 0.48 probably_damaging(0.999) TCGA-DM-A1HA-01 5 151784003 151784003 G T NMUR2 Missense_Mutation p.F224L 0.50 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HA-01 5 153054148 153054148 C T GRIA1 Missense_Mutation p.P273L 0.38 tolerated(0.07) possibly_damaging(0.595) TCGA-DM-A1HA-01 5 158588274 158588274 C T RNF145 Silent p.Q572Q 0.42 TCGA-DM-A1HA-01 5 15936810 15936810 G A FBXL7 Missense_Mutation p.V331I 0.50 tolerated(0.29) benign(0.026) TCGA-DM-A1HA-01 5 174870292 174870292 G A DRD1 5'UTR 0.19 TCGA-DM-A1HA-01 5 26886074 26886074 C G CDH9 Splice_Site p.X544_splice 0.50 TCGA-DM-A1HA-01 5 61846200 61846200 G C IPO11 Missense_Mutation p.E793Q 0.93 deleterious(0.01) probably_damaging(0.939) TCGA-DM-A1HA-01 6 10930668 10930668 T C SYCP2L Silent p.S518S 0.95 TCGA-DM-A1HA-01 6 154360590 154360590 C T OPRM1 Nonsense_Mutation p.R64* 0.93 TCGA-DM-A1HA-01 6 155109055 155109055 C T SCAF8 Nonsense_Mutation p.R74* 0.46 TCGA-DM-A1HA-01 6 169634862 169634862 G A THBS2 Missense_Mutation p.R540C 0.92 tolerated(0.11) possibly_damaging(0.67) TCGA-DM-A1HA-01 6 24447197 24447197 G A GPLD1 Silent p.N563N 0.98 TCGA-DM-A1HA-01 6 24572915 24572915 C T KIAA0319 Silent p.T582T 0.96 TCGA-DM-A1HA-01 6 33179222 33179222 G T RING1 Missense_Mutation p.S248I 0.86 tolerated(0.15) unknown(0) TCGA-DM-A1HA-01 6 33373251 33373251 G T KIFC1 Missense_Mutation p.S460I 1.00 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HA-01 6 345904 345904 G A DUSP22 Missense_Mutation p.R80H 0.22 tolerated(0.39) benign(0.159) TCGA-DM-A1HA-01 6 38825349 38825349 G A DNAH8 Missense_Mutation p.R1713H 0.93 benign(0) TCGA-DM-A1HA-01 6 50683053 50683053 C T TFAP2D Silent p.D88D 0.95 TCGA-DM-A1HA-01 6 50791198 50791198 G A TFAP2B Missense_Mutation p.A54T 0.86 deleterious(0.05) benign(0.053) TCGA-DM-A1HA-01 6 55739779 55739779 A - BMP5 5'UTR 0.83 TCGA-DM-A1HA-01 6 76657094 76657094 G A IMPG1 Missense_Mutation p.R661C 0.95 deleterious(0.02) benign(0.284) TCGA-DM-A1HA-01 7 136700754 136700754 G A CHRM2 Missense_Mutation p.R381Q 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-DM-A1HA-01 7 22771182 22771182 G A IL6 Missense_Mutation p.R210Q 0.61 deleterious(0.01) probably_damaging(0.988) TCGA-DM-A1HA-01 7 29519844 29519844 G C CHN2 Intron 0.33 TCGA-DM-A1HA-01 7 35242379 35242379 G A TBX20 Missense_Mutation p.S336L 0.25 tolerated(0.08) benign(0.031) TCGA-DM-A1HA-01 7 45223048 45223048 G A RAMP3 3'UTR 0.24 TCGA-DM-A1HA-01 7 5112573 5112573 G A RBAK-RBAKDN 3'UTR 0.29 TCGA-DM-A1HA-01 7 53103986 53103986 C T POM121L12 Missense_Mutation p.R208W 0.39 tolerated(0.13) benign(0) TCGA-DM-A1HA-01 7 53104120 53104120 G C POM121L12 Missense_Mutation p.W252C 0.40 tolerated(0.19) probably_damaging(0.95) TCGA-DM-A1HA-01 7 53104179 53104179 C T POM121L12 Missense_Mutation p.T272M 0.72 tolerated_low_confidence(0.05) probably_damaging(0.968) TCGA-DM-A1HA-01 7 6057485 6057485 C T AIMP2 Missense_Mutation p.P128L 0.28 deleterious(0) probably_damaging(1) TCGA-DM-A1HA-01 7 6819328 6819328 C T RSPH10B2 Missense_Mutation p.A501V 0.37 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HA-01 7 75104037 75104037 G A POM121C 5'UTR 0.32 TCGA-DM-A1HA-01 7 82580738 82580738 C T PCLO Missense_Mutation p.A3056T 0.29 unknown(0) TCGA-DM-A1HA-01 7 95001618 95001618 C T PON3 Silent p.A78A 0.36 TCGA-DM-A1HA-01 8 120118132 120118132 G A COLEC10 Missense_Mutation p.R179Q 0.93 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HA-01 8 75927146 75927146 A T CRISPLD1 Missense_Mutation p.K242N 0.95 tolerated(0.13) benign(0.008) TCGA-DM-A1HA-01 9 129647805 129647805 A C ZBTB34 3'UTR 0.24 TCGA-DM-A1HA-01 9 139379495 139379495 C A C9orf163 Missense_Mutation p.H199N 0.21 deleterious_low_confidence(0) benign(0.216) TCGA-DM-A1HA-01 9 66466720 66466720 C A RP11-262H14.1 RNA 0.33 TCGA-DM-A1HA-01 9 73233808 73233808 C T TRPM3 Missense_Mutation p.R766H 0.94 deleterious(0.04) possibly_damaging(0.904) TCGA-DM-A1HA-01 9 88236187 88236187 G A AGTPBP1 Nonsense_Mutation p.Q637* 0.40 TCGA-DM-A1HA-01 X 134683646 134683646 A G DDX26B Silent p.V274V 0.95 TCGA-DM-A1HA-01 X 39922049 39922049 G A BCOR Missense_Mutation p.R1375W 0.92 deleterious(0) possibly_damaging(0.556) TCGA-DM-A1HA-01 X 91133031 91133031 G T PCDH11X Missense_Mutation p.D598Y 0.84 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 10 100249885 100249885 C A HPSE2 Silent p.G463G 0.34 TCGA-DM-A1HB-01 10 101090072 101090072 G - CNNM1 Frame_Shift_Del p.G311Afs*51 0.30 TCGA-DM-A1HB-01 10 101646304 101646304 C T DNMBP Missense_Mutation p.R1124H 0.45 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HB-01 10 102762363 102762363 C A LZTS2 Missense_Mutation p.A23D 0.34 tolerated(0.63) benign(0.042) TCGA-DM-A1HB-01 10 104445679 104445679 G A ARL3 Missense_Mutation p.T132I 0.36 deleterious(0.02) benign(0.394) TCGA-DM-A1HB-01 10 105762265 105762265 C T SLK Silent p.D443D 0.39 TCGA-DM-A1HB-01 10 105889762 105889762 T - WDR96 3'UTR 0.31 TCGA-DM-A1HB-01 10 106074922 106074922 G A ITPRIP Silent p.D296D 0.36 TCGA-DM-A1HB-01 10 112541004 112541004 A G RBM20 Missense_Mutation p.I213V 0.14 tolerated(0.78) benign(0.064) TCGA-DM-A1HB-01 10 112541460 112541460 G A RBM20 Missense_Mutation p.G365R 0.39 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 10 11362860 11362860 C T CELF2 Intron 0.43 TCGA-DM-A1HB-01 10 11367805 11367806 - G CELF2 Frame_Shift_Ins p.A436Gfs*31 0.09 TCGA-DM-A1HB-01 10 117704187 117704187 C A ATRNL1 Missense_Mutation p.A1346D 0.32 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HB-01 10 118434712 118434712 G T HSPA12A Silent p.T536T 0.33 TCGA-DM-A1HB-01 10 118719655 118719655 C T KIAA1598 Missense_Mutation p.A87T 0.41 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 10 120513926 120513926 T G CACUL1 Missense_Mutation p.T117P 0.25 tolerated(0.33) benign(0.184) TCGA-DM-A1HB-01 10 121337194 121337194 T - TIAL1 Frame_Shift_Del p.N221Ifs*13 0.22 TCGA-DM-A1HB-01 10 124813357 124813357 T C ACADSB 3'UTR 0.38 TCGA-DM-A1HB-01 10 124895627 124895627 C - HMX3 Frame_Shift_Del p.P23Hfs*100 0.30 TCGA-DM-A1HB-01 10 13043214 13043214 G T CCDC3 Silent p.S119S 0.33 TCGA-DM-A1HB-01 10 131977640 131977640 T C GLRX3 Missense_Mutation p.L331P 0.35 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 10 15256452 15256452 C T FAM171A1 Missense_Mutation p.V379I 0.40 tolerated(0.66) benign(0.01) TCGA-DM-A1HB-01 10 17905649 17905649 C T MRC1L1 Silent p.I580I 0.36 TCGA-DM-A1HB-01 10 25312288 25312288 T C THNSL1 Missense_Mutation p.W46R 0.33 tolerated_low_confidence(0.05) benign(0.007) TCGA-DM-A1HB-01 10 25314729 25314729 T C THNSL1 3'UTR 0.30 TCGA-DM-A1HB-01 10 26505814 26505814 G T GAD2 Missense_Mutation p.A26S 0.32 tolerated_low_confidence(0.51) benign(0.092) TCGA-DM-A1HB-01 10 267195 267195 T C ZMYND11 Silent p.L113L 0.36 TCGA-DM-A1HB-01 10 29599979 29599979 G A LYZL1 Silent p.E192E 0.30 TCGA-DM-A1HB-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.28 TCGA-DM-A1HB-01 10 30749686 30749686 G A MAP3K8 Missense_Mutation p.R442H 0.41 tolerated_low_confidence(0.21) probably_damaging(0.91) TCGA-DM-A1HB-01 10 3176689 3176689 T C PFKP Silent p.S679S 0.30 TCGA-DM-A1HB-01 10 35343419 35343419 G A CUL2 Silent p.D141D 0.39 TCGA-DM-A1HB-01 10 35456688 35456688 G A CREM Intron 0.37 TCGA-DM-A1HB-01 10 35928337 35928337 G A FZD8 Missense_Mutation p.T674M 0.45 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DM-A1HB-01 10 38241808 38241808 C T ZNF25 Silent p.Q206Q 0.32 TCGA-DM-A1HB-01 10 38345116 38345116 G - ZNF33A Frame_Shift_Del p.E690Rfs*83 0.24 TCGA-DM-A1HB-01 10 38647315 38647315 T C HSD17B7P2 RNA 0.22 TCGA-DM-A1HB-01 10 44139432 44139432 G C ZNF32 3'UTR 0.29 TCGA-DM-A1HB-01 10 45500713 45500713 G A ZNF22 3'UTR 0.34 TCGA-DM-A1HB-01 10 465053 465053 G A DIP2C Missense_Mutation p.R231W 0.42 tolerated(0.08) possibly_damaging(0.638) TCGA-DM-A1HB-01 10 48373115 48373115 C A ZNF488 3'UTR 0.40 TCGA-DM-A1HB-01 10 48390613 48390613 T C RBP3 Missense_Mutation p.I89V 0.39 tolerated(0.89) possibly_damaging(0.803) TCGA-DM-A1HB-01 10 50315958 50315958 G A VSTM4 Silent p.C46C 0.35 TCGA-DM-A1HB-01 10 52103265 52103265 G A SGMS1 Missense_Mutation p.L204F 0.33 tolerated(0.55) benign(0.002) TCGA-DM-A1HB-01 10 52390513 52390513 A G RP11-50E11.3 RNA 0.22 TCGA-DM-A1HB-01 10 52390958 52390958 G A RP11-50E11.3 RNA 0.33 TCGA-DM-A1HB-01 10 53458468 53458468 G C CSTF2T Missense_Mutation p.T281S 0.48 tolerated(0.15) benign(0.039) TCGA-DM-A1HB-01 10 55582363 55582363 A - PCDH15 Frame_Shift_Del p.L1710Yfs*136 0.21 TCGA-DM-A1HB-01 10 55616953 55616953 T - PCDH15 Frame_Shift_Del p.K1263Rfs*2 0.21 TCGA-DM-A1HB-01 10 5567387 5567387 G - CALML3 Frame_Shift_Del p.E115Rfs*3 0.28 TCGA-DM-A1HB-01 10 5853894 5853894 C T GDI2 Intron 0.38 TCGA-DM-A1HB-01 10 61847963 61847964 - G ANK3 Frame_Shift_Ins p.L1161Pfs*13 0.26 TCGA-DM-A1HB-01 10 63188767 63188767 G T TMEM26 Silent p.L174L 0.22 TCGA-DM-A1HB-01 10 63188805 63188805 G T TMEM26 Missense_Mutation p.L162I 0.26 deleterious(0.04) possibly_damaging(0.824) TCGA-DM-A1HB-01 10 64415277 64415277 T C ZNF365 Intron 0.45 TCGA-DM-A1HB-01 10 64974010 64974010 G A JMJD1C Silent p.S639S 0.32 TCGA-DM-A1HB-01 10 70056066 70056066 G A PBLD Silent p.G80G 0.08 TCGA-DM-A1HB-01 10 70645546 70645546 A G STOX1 Missense_Mutation p.Q665R 0.28 tolerated(0.06) possibly_damaging(0.614) TCGA-DM-A1HB-01 10 70748863 70748863 T G KIAA1279 Missense_Mutation p.V92G 0.37 deleterious(0.02) benign(0.015) TCGA-DM-A1HB-01 10 72631702 72631702 C T SGPL1 Missense_Mutation p.R340W 0.33 deleterious(0) probably_damaging(0.988) TCGA-DM-A1HB-01 10 73565722 73565722 C T CDH23 Missense_Mutation p.R438C 0.46 deleterious(0.03) probably_damaging(0.964) TCGA-DM-A1HB-01 10 74879813 74879813 A - NUDT13 Frame_Shift_Del p.A43Pfs*32 0.30 TCGA-DM-A1HB-01 10 76990826 76990826 T - VDAC2 3'UTR 0.24 TCGA-DM-A1HB-01 10 8006489 8006489 C T TAF3 Missense_Mutation p.T339M 0.29 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-DM-A1HB-01 10 81063889 81063889 G A ZMIZ1 Missense_Mutation p.R748H 0.33 probably_damaging(0.965) TCGA-DM-A1HB-01 10 81146068 81146068 G - ZCCHC24 3'UTR 0.20 TCGA-DM-A1HB-01 10 88419206 88419206 G T OPN4 Missense_Mutation p.A272S 0.35 tolerated(0.06) possibly_damaging(0.721) TCGA-DM-A1HB-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.30 TCGA-DM-A1HB-01 10 90966906 90966906 G A CH25H Silent p.Y48Y 0.36 TCGA-DM-A1HB-01 10 91465094 91465094 T G KIF20B Missense_Mutation p.Y15D 0.39 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HB-01 10 93397 93397 G A TUBB8 Missense_Mutation p.T312M 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-DM-A1HB-01 10 95085703 95085703 G C MYOF Missense_Mutation p.H1717Q 0.42 deleterious(0.04) probably_damaging(0.964) TCGA-DM-A1HB-01 10 95152699 95152699 C T MYOF Silent p.S477S 0.33 TCGA-DM-A1HB-01 10 95360715 95360715 A G RBP4 Missense_Mutation p.V24A 0.33 deleterious(0) probably_damaging(0.92) TCGA-DM-A1HB-01 10 98764495 98764495 C T SLIT1 Missense_Mutation p.R1222H 0.35 deleterious(0) benign(0.116) TCGA-DM-A1HB-01 10 98766257 98766257 C T SLIT1 Missense_Mutation p.A1188T 0.24 tolerated(0.36) probably_damaging(0.998) TCGA-DM-A1HB-01 11 1018084 1018084 A C MUC6 Missense_Mutation p.F1573V 0.27 unknown(0) TCGA-DM-A1HB-01 11 103031733 103031733 T C DYNC2H1 Missense_Mutation p.V1484A 0.36 possibly_damaging(0.894) TCGA-DM-A1HB-01 11 108129749 108129749 C T ATM Nonsense_Mutation p.R805* 0.43 TCGA-DM-A1HB-01 11 1086245 1086245 A G MUC2 Splice_Site p.X986_splice 0.48 TCGA-DM-A1HB-01 11 113618268 113618268 A C ZW10 Missense_Mutation p.I419M 0.29 tolerated(0.32) benign(0.304) TCGA-DM-A1HB-01 11 113673924 113673924 C - USP28 Frame_Shift_Del p.V940Sfs*5 0.21 TCGA-DM-A1HB-01 11 116718228 116718228 T C SIK3 Missense_Mutation p.M1200V 0.32 deleterious_low_confidence(0.02) benign(0.025) TCGA-DM-A1HB-01 11 117321271 117321271 G A DSCAML1 Silent p.G1294G 0.43 TCGA-DM-A1HB-01 11 117391992 117391992 G A DSCAML1 Silent p.L416L 0.19 TCGA-DM-A1HB-01 11 117710852 117710852 C G FXYD6 Intron 0.28 TCGA-DM-A1HB-01 11 118498561 118498561 C T PHLDB1 Missense_Mutation p.A341V 0.27 tolerated(0.1) benign(0.296) TCGA-DM-A1HB-01 11 118516454 118516454 G A PHLDB1 Missense_Mutation p.A1140T 0.33 deleterious(0.04) benign(0.005) TCGA-DM-A1HB-01 11 118770712 118770712 A G BCL9L Missense_Mutation p.I1107T 0.35 probably_damaging(0.937) TCGA-DM-A1HB-01 11 119005125 119005125 C - HINFP Frame_Shift_Del p.P492Qfs*17 0.30 TCGA-DM-A1HB-01 11 119025071 119025071 T C ABCG4 Missense_Mutation p.L153P 0.43 deleterious(0.02) possibly_damaging(0.564) TCGA-DM-A1HB-01 11 119986058 119986058 C A TRIM29 Missense_Mutation p.K564N 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DM-A1HB-01 11 120097535 120097535 G A OAF Missense_Mutation p.R126Q 0.21 tolerated(0.3) benign(0.016) TCGA-DM-A1HB-01 11 120702655 120702655 G A GRIK4 Silent p.P202P 0.32 TCGA-DM-A1HB-01 11 120998636 120998636 C T TECTA Silent p.C650C 0.38 TCGA-DM-A1HB-01 11 122726544 122726544 C T CRTAM Missense_Mutation p.P211L 0.34 deleterious(0.05) benign(0.092) TCGA-DM-A1HB-01 11 122733124 122733124 T C CRTAM Intron 0.35 TCGA-DM-A1HB-01 11 12278458 12278458 C T MICAL2 Missense_Mutation p.R1028C 0.42 deleterious(0.01) benign(0.022) TCGA-DM-A1HB-01 11 124120592 124120592 C T OR8G1 Missense_Mutation p.T57I 0.35 deleterious_low_confidence(0.03) benign(0.105) TCGA-DM-A1HB-01 11 126162685 126162685 C T TIRAP Silent p.G127G 0.38 TCGA-DM-A1HB-01 11 128781290 128781290 G A KCNJ5 Missense_Mutation p.R41H 0.33 tolerated(0.28) benign(0.003) TCGA-DM-A1HB-01 11 17554878 17554878 T A USH1C Intron 0.33 TCGA-DM-A1HB-01 11 18636667 18636667 C A SPTY2D1 Missense_Mutation p.G385V 0.24 deleterious(0.03) benign(0.053) TCGA-DM-A1HB-01 11 19955010 19955010 T C NAV2 Missense_Mutation p.L430P 0.34 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 11 19970312 19970312 G A NAV2 Silent p.R800R 0.29 TCGA-DM-A1HB-01 11 2154774 2154774 G A IGF2 Silent p.D149D 0.05 TCGA-DM-A1HB-01 11 24927565 24927565 C T LUZP2 Missense_Mutation p.S142L 0.45 deleterious(0) probably_damaging(0.985) TCGA-DM-A1HB-01 11 28311868 28311868 A G METTL15 Missense_Mutation p.M175V 0.29 deleterious(0) probably_damaging(0.991) TCGA-DM-A1HB-01 11 30255279 30255279 G A FSHB Missense_Mutation p.D108N 0.35 tolerated(0.18) benign(0.012) TCGA-DM-A1HB-01 11 30932934 30932934 C T DCDC1 Silent p.V1229V 0.06 TCGA-DM-A1HB-01 11 34163329 34163329 A G NAT10 Missense_Mutation p.M926V 0.31 tolerated(0.43) benign(0.015) TCGA-DM-A1HB-01 11 380881 380881 C T B4GALNT4 Missense_Mutation p.R976W 0.34 deleterious(0) unknown(0) TCGA-DM-A1HB-01 11 397066 397066 G A PKP3 Missense_Mutation p.G189R 0.28 tolerated(0.31) benign(0.013) TCGA-DM-A1HB-01 11 43465021 43465021 C T TTC17 Missense_Mutation p.R800W 0.32 deleterious(0.01) probably_damaging(0.928) TCGA-DM-A1HB-01 11 44129501 44129501 G - EXT2 Frame_Shift_Del p.D115Ifs*30 0.29 TCGA-DM-A1HB-01 11 46406667 46406667 C T CHRM4 3'UTR 0.33 TCGA-DM-A1HB-01 11 46568802 46568802 G A AMBRA1 Missense_Mutation p.T80M 0.34 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-DM-A1HB-01 11 4674478 4674478 G A OR51E1 Missense_Mutation p.G241D 0.30 deleterious(0.03) benign(0.237) TCGA-DM-A1HB-01 11 46765453 46765453 T G CKAP5 3'UTR 0.31 TCGA-DM-A1HB-01 11 46784669 46784669 T C CKAP5 Missense_Mutation p.T1250A 0.38 deleterious(0.04) probably_damaging(0.978) TCGA-DM-A1HB-01 11 47202044 47202044 G A PACSIN3 Missense_Mutation p.R137C 0.28 deleterious(0) possibly_damaging(0.908) TCGA-DM-A1HB-01 11 47587483 47587483 G T PTPMT1 Missense_Mutation p.G67V 0.27 deleterious(0) probably_damaging(0.983) TCGA-DM-A1HB-01 11 48238768 48238768 G A OR4B1 Missense_Mutation p.R136H 0.38 tolerated(0.12) benign(0.006) TCGA-DM-A1HB-01 11 4843353 4843353 A G OR51F2 Silent p.E246E 0.32 TCGA-DM-A1HB-01 11 5254174 5254174 T G HBD 3'UTR 0.28 TCGA-DM-A1HB-01 11 5364392 5364392 A G OR51B5 Silent p.F121F 0.29 TCGA-DM-A1HB-01 11 5536838 5536838 A G UBQLNL Silent p.N278N 0.40 TCGA-DM-A1HB-01 11 55433432 55433432 C A OR4C6 Missense_Mutation p.P264T 0.38 deleterious_low_confidence(0.01) benign(0.192) TCGA-DM-A1HB-01 11 5632589 5632589 A C TRIM6 3'UTR 0.31 TCGA-DM-A1HB-01 11 5663738 5663738 T C TRIM34 Splice_Site p.X292_splice 0.36 TCGA-DM-A1HB-01 11 58034971 58034971 C T OR10W1 Silent p.P120P 0.35 TCGA-DM-A1HB-01 11 59211099 59211099 T A OR5A1 Missense_Mutation p.V153D 0.35 deleterious(0.04) possibly_damaging(0.555) TCGA-DM-A1HB-01 11 61077421 61077421 G A DDB1 Missense_Mutation p.H805Y 0.43 tolerated(0.68) possibly_damaging(0.508) TCGA-DM-A1HB-01 11 61090531 61090531 A G DDB1 Silent p.N319N 0.33 TCGA-DM-A1HB-01 11 62459865 62459865 C T BSCL2 Silent p.A282A 0.26 TCGA-DM-A1HB-01 11 63276006 63276006 A G LGALS12 Intron 0.21 TCGA-DM-A1HB-01 11 63525745 63525745 T C RTN3 3'UTR 0.32 TCGA-DM-A1HB-01 11 64026025 64026025 G A PLCB3 Missense_Mutation p.V365M 0.42 deleterious(0) possibly_damaging(0.761) TCGA-DM-A1HB-01 11 64087313 64087313 T C PRDX5 Silent p.P93P 0.33 TCGA-DM-A1HB-01 11 6413003 6413003 G A SMPD1 Silent p.P236P 0.09 TCGA-DM-A1HB-01 11 64527240 64527240 C T PYGM Missense_Mutation p.R44H 0.34 tolerated(0.05) probably_damaging(0.99) TCGA-DM-A1HB-01 11 64666131 64666131 G A ATG2A Missense_Mutation p.P1550S 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-DM-A1HB-01 11 6478103 6478103 C T TRIM3 Missense_Mutation p.A285T 0.37 tolerated(0.4) benign(0.004) TCGA-DM-A1HB-01 11 64877266 64877266 G T VPS51 Missense_Mutation p.Q583H 0.31 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 11 65108493 65108493 C T DPF2 Nonsense_Mutation p.R84* 0.32 TCGA-DM-A1HB-01 11 65123867 65123867 G T TIGD3 Missense_Mutation p.Q196H 0.47 deleterious(0.04) possibly_damaging(0.667) TCGA-DM-A1HB-01 11 65479500 65479500 T G KAT5 5'Flank 0.58 TCGA-DM-A1HB-01 11 65637666 65637666 A G EFEMP2 Missense_Mutation p.V178A 0.28 tolerated(0.56) probably_damaging(0.952) TCGA-DM-A1HB-01 11 65658958 65658958 G A CCDC85B 3'UTR 0.41 TCGA-DM-A1HB-01 11 65685458 65685459 CA - C11orf68 Frame_Shift_Del p.V118Gfs*76 0.24 TCGA-DM-A1HB-01 11 66299487 66299487 C T BBS1 Silent p.S587S 0.31 TCGA-DM-A1HB-01 11 66329501 66329501 C T CTSF 3'Flank 0.37 TCGA-DM-A1HB-01 11 6662405 6662405 C T DCHS1 Missense_Mutation p.R147Q 0.38 tolerated(0.23) benign(0.003) TCGA-DM-A1HB-01 11 66627303 66627303 C T LRFN4 Silent p.G515G 0.03 TCGA-DM-A1HB-01 11 67067040 67067040 C T ANKRD13D Missense_Mutation p.R280C 0.38 deleterious(0) benign(0.233) TCGA-DM-A1HB-01 11 67258517 67258517 C - AIP 3'UTR 0.36 TCGA-DM-A1HB-01 11 67402373 67402373 G - TBX10 Frame_Shift_Del p.F98Sfs*3 0.22 TCGA-DM-A1HB-01 11 68153909 68153909 G A LRP5 Missense_Mutation p.D381N 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-DM-A1HB-01 11 68566812 68566812 C T CPT1A Silent p.S189S 0.32 TCGA-DM-A1HB-01 11 686940 686940 T C DEAF1 Missense_Mutation p.E241G 0.34 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 11 71725651 71725651 C T NUMA1 Silent p.A966A 0.37 TCGA-DM-A1HB-01 11 71939514 71939514 G A INPPL1 Silent p.P123P 0.31 TCGA-DM-A1HB-01 11 72005484 72005484 T C CLPB Missense_Mutation p.H552R 0.31 deleterious(0.01) probably_damaging(0.961) TCGA-DM-A1HB-01 11 72290417 72290417 C T PDE2A Missense_Mutation p.R756H 0.38 deleterious(0) probably_damaging(0.972) TCGA-DM-A1HB-01 11 73681024 73681024 G A DNAJB13 Silent p.K272K 0.32 TCGA-DM-A1HB-01 11 76063309 76063309 G A PRKRIR Silent p.G295G 0.30 TCGA-DM-A1HB-01 11 76507587 76507587 C T TSKU Silent p.S309S 0.51 TCGA-DM-A1HB-01 11 76868033 76868033 T C MYO7A Missense_Mutation p.S240P 0.25 deleterious(0) probably_damaging(0.917) TCGA-DM-A1HB-01 11 76925784 76925784 A G MYO7A 3'UTR 0.09 TCGA-DM-A1HB-01 11 78423683 78423683 G A TENM4 Missense_Mutation p.R1300W 0.28 deleterious(0.01) benign(0.032) TCGA-DM-A1HB-01 11 82443763 82443763 G - FAM181B Frame_Shift_Del p.L337* 0.37 TCGA-DM-A1HB-01 11 83691656 83691656 C A DLG2 Missense_Mutation p.G317W 0.33 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 11 8662081 8662081 G T TRIM66 Missense_Mutation p.P467H 0.33 deleterious(0.01) possibly_damaging(0.838) TCGA-DM-A1HB-01 11 88924446 88924446 G A TYR Missense_Mutation p.R299H 0.32 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 11 904730 904730 G A CHID1 Silent p.A29A 0.34 TCGA-DM-A1HB-01 11 9228258 9228258 C T DENND5A Missense_Mutation p.V85I 0.29 tolerated(0.22) benign(0.053) TCGA-DM-A1HB-01 11 94231294 94231294 G A ANKRD49 Missense_Mutation p.E106K 0.36 tolerated(0.32) benign(0.16) TCGA-DM-A1HB-01 11 94554766 94554766 G A AMOTL1 Missense_Mutation p.A398T 0.33 tolerated(0.69) benign(0.022) TCGA-DM-A1HB-01 11 992664 992664 C T AP2A2 Silent p.Y477Y 0.37 TCGA-DM-A1HB-01 12 100041934 100041934 T A FAM71C 5'UTR 0.31 TCGA-DM-A1HB-01 12 100613799 100613799 T - ACTR6 Frame_Shift_Del p.F314Lfs*6 0.25 TCGA-DM-A1HB-01 12 103352526 103352526 C T ASCL1 Silent p.R168R 0.39 TCGA-DM-A1HB-01 12 104121088 104121088 T - STAB2 Frame_Shift_Del p.F1633Lfs*22 0.27 TCGA-DM-A1HB-01 12 104359777 104359777 C T TDG 5'UTR 0.10 TCGA-DM-A1HB-01 12 10532376 10532376 A - KLRK1 Frame_Shift_Del p.F55Sfs*7 0.38 TCGA-DM-A1HB-01 12 10862658 10862658 G - YBX3 Frame_Shift_Del p.P210Lfs*58 0.30 TCGA-DM-A1HB-01 12 111162557 111162557 T C PPP1CC Missense_Mutation p.Y144C 0.36 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-DM-A1HB-01 12 112623046 112623046 C - HECTD4 Frame_Shift_Del p.A3096Rfs*26 0.25 TCGA-DM-A1HB-01 12 112673554 112673554 C A HECTD4 Missense_Mutation p.A1681S 0.40 possibly_damaging(0.84) TCGA-DM-A1HB-01 12 11286459 11286459 C A TAS2R30 Missense_Mutation p.V129F 0.34 deleterious(0) possibly_damaging(0.543) TCGA-DM-A1HB-01 12 113401156 113401156 T C OAS3 Missense_Mutation p.V708A 0.34 deleterious(0.02) possibly_damaging(0.461) TCGA-DM-A1HB-01 12 113549928 113549928 C T RASAL1 Missense_Mutation p.R446Q 0.42 tolerated(0.58) benign(0.006) TCGA-DM-A1HB-01 12 113595337 113595337 G A DDX54 3'UTR 0.27 TCGA-DM-A1HB-01 12 113617788 113617788 T G DDX54 Missense_Mutation p.K109N 0.35 deleterious(0) possibly_damaging(0.48) TCGA-DM-A1HB-01 12 117703242 117703242 C T NOS1 Missense_Mutation p.R672H 0.40 deleterious(0.02) benign(0.01) TCGA-DM-A1HB-01 12 118105461 118105461 G T KSR2 Missense_Mutation p.A330D 0.28 tolerated(0.27) benign(0.028) TCGA-DM-A1HB-01 12 120173112 120173112 A G CIT Silent p.A1003A 0.36 TCGA-DM-A1HB-01 12 120189938 120189938 C T CIT Missense_Mutation p.A941T 0.25 tolerated(0.14) probably_damaging(0.974) TCGA-DM-A1HB-01 12 12022535 12022535 C T ETV6 Missense_Mutation p.P214L 0.33 tolerated(0.26) benign(0.014) TCGA-DM-A1HB-01 12 120574414 120574414 C T GCN1L1 Silent p.R2300R 0.31 TCGA-DM-A1HB-01 12 120741791 120741792 - A SIRT4 Frame_Shift_Ins p.N144Kfs*52 0.30 TCGA-DM-A1HB-01 12 122248003 122248003 C T SETD1B Silent p.P384P 0.34 TCGA-DM-A1HB-01 12 122248384 122248384 C T SETD1B Silent p.R511R 0.30 TCGA-DM-A1HB-01 12 122261113 122261113 C G SETD1B Missense_Mutation p.A1500G 0.31 unknown(0) TCGA-DM-A1HB-01 12 122992981 122992981 T G RSRC2 Silent p.G273G 0.40 TCGA-DM-A1HB-01 12 123950525 123950525 A - SNRNP35 Frame_Shift_Del p.K153Rfs*6 0.31 TCGA-DM-A1HB-01 12 124156087 124156087 C A TCTN2 Missense_Mutation p.P39H 0.08 deleterious(0.04) possibly_damaging(0.578) TCGA-DM-A1HB-01 12 124323216 124323216 G A DNAH10 Missense_Mutation p.V1588I 0.28 benign(0.379) TCGA-DM-A1HB-01 12 125292347 125292347 G A SCARB1 Silent p.C323C 0.43 TCGA-DM-A1HB-01 12 125397289 125397289 G A UBC Silent p.D343D 0.22 TCGA-DM-A1HB-01 12 125397298 125397298 G A UBC Silent p.I340I 0.14 TCGA-DM-A1HB-01 12 132445655 132445655 G A EP400 Missense_Mutation p.S164N 0.03 unknown(0) TCGA-DM-A1HB-01 12 132446394 132446394 T C EP400 Silent p.H410H 0.39 TCGA-DM-A1HB-01 12 133374955 133374955 G A GOLGA3 Missense_Mutation p.R637C 0.34 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 12 15722369 15722369 C T PTPRO Silent p.D922D 0.39 TCGA-DM-A1HB-01 12 21422458 21422459 - A SLCO1A2 3'UTR 0.25 TCGA-DM-A1HB-01 12 21621541 21621541 A G PYROXD1 Silent p.Q452Q 0.34 TCGA-DM-A1HB-01 12 21757567 21757567 C A GYS2 5'UTR 0.30 TCGA-DM-A1HB-01 12 21953904 21953904 G A ABCC9 3'UTR 0.28 TCGA-DM-A1HB-01 12 2224569 2224569 A G CACNA1C Missense_Mutation p.S77G 0.51 tolerated(0.29) benign(0.03) TCGA-DM-A1HB-01 12 2229534 2229534 G A CACNA1C Missense_Mutation p.V139M 0.32 tolerated(0.07) possibly_damaging(0.844) TCGA-DM-A1HB-01 12 23893954 23893954 A G SOX5 Silent p.A196A 0.33 TCGA-DM-A1HB-01 12 24736562 24736562 A - LINC00477 RNA 0.26 TCGA-DM-A1HB-01 12 26275918 26275918 G - BHLHE41 Frame_Shift_Del p.P177Rfs*4 0.22 TCGA-DM-A1HB-01 12 26752141 26752142 - A ITPR2 Frame_Shift_Ins p.L1313Ffs*10 0.27 TCGA-DM-A1HB-01 12 27181262 27181262 T C MED21 Silent p.A101A 0.36 TCGA-DM-A1HB-01 12 2783740 2783740 C T CACNA1C Missense_Mutation p.A1635V 0.38 deleterious(0.05) benign(0.215) TCGA-DM-A1HB-01 12 29617463 29617463 G C OVCH1 Missense_Mutation p.T701S 0.40 tolerated(0.12) possibly_damaging(0.791) TCGA-DM-A1HB-01 12 32133919 32133919 T C KIAA1551 Silent p.A10A 0.35 TCGA-DM-A1HB-01 12 40114659 40114659 A - C12orf40 Frame_Shift_Del p.M524* 0.26 TCGA-DM-A1HB-01 12 46211569 46211569 G A ARID2 Missense_Mutation p.V179I 0.36 deleterious(0.03) probably_damaging(0.985) TCGA-DM-A1HB-01 12 46316316 46316316 T G SCAF11 Missense_Mutation p.K1392T 0.39 deleterious(0) probably_damaging(0.991) TCGA-DM-A1HB-01 12 48174350 48174350 T C SLC48A1 3'UTR 0.40 TCGA-DM-A1HB-01 12 48185744 48185744 G A HDAC7 Silent p.C574C 0.28 TCGA-DM-A1HB-01 12 48372525 48372525 G - COL2A1 Frame_Shift_Del p.P917Lfs*111 0.33 TCGA-DM-A1HB-01 12 49259617 49259617 A G RND1 5'UTR 0.30 TCGA-DM-A1HB-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.31 TCGA-DM-A1HB-01 12 49412461 49412461 G - PRKAG1 Intron 0.25 TCGA-DM-A1HB-01 12 49690217 49690217 C T PRPH Silent p.D203D 0.32 TCGA-DM-A1HB-01 12 49729911 49729911 C T C1QL4 Missense_Mutation p.R117Q 0.37 deleterious(0.02) benign(0.104) TCGA-DM-A1HB-01 12 49934856 49934856 G A KCNH3 Missense_Mutation p.R84H 0.33 tolerated(0.39) benign(0.032) TCGA-DM-A1HB-01 12 49935547 49935547 G T KCNH3 Missense_Mutation p.G149C 0.34 tolerated(0.08) possibly_damaging(0.865) TCGA-DM-A1HB-01 12 49948198 49948198 C T KCNH3 Missense_Mutation p.T666M 0.47 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 12 50038078 50038078 T - PRPF40B 3'UTR 0.21 TCGA-DM-A1HB-01 12 50041509 50041509 C A FMNL3 Missense_Mutation p.V919F 0.37 deleterious(0.02) probably_damaging(0.929) TCGA-DM-A1HB-01 12 5020694 5020694 G A KCNA1 Silent p.T50T 0.41 TCGA-DM-A1HB-01 12 5022772 5022772 T G KCNA1 3'UTR 0.35 TCGA-DM-A1HB-01 12 50571296 50571296 G A LIMA1 Missense_Mutation p.P612S 0.38 tolerated(0.12) benign(0.034) TCGA-DM-A1HB-01 12 51279233 51279233 A C TMPRSS12 Intron 0.43 TCGA-DM-A1HB-01 12 51685834 51685834 A G BIN2 Silent p.T352T 0.34 TCGA-DM-A1HB-01 12 51736419 51736419 T C CELA1 Missense_Mutation p.Y89C 0.35 tolerated(0.1) benign(0.069) TCGA-DM-A1HB-01 12 52652057 52652057 G A KRT121P RNA 0.30 TCGA-DM-A1HB-01 12 52797602 52797602 A G KRT82 Missense_Mutation p.I168T 0.50 deleterious(0.01) benign(0.24) TCGA-DM-A1HB-01 12 53823740 53823740 C T AMHR2 Silent p.S422S 0.32 TCGA-DM-A1HB-01 12 54427099 54427099 G A HOXC5 Missense_Mutation p.A65T 0.43 tolerated(0.33) benign(0.026) TCGA-DM-A1HB-01 12 5541406 5541406 C T NTF3 5'UTR 0.50 TCGA-DM-A1HB-01 12 55420844 55420844 G - NEUROD4 Frame_Shift_Del p.L209Ffs*49 0.24 TCGA-DM-A1HB-01 12 55422287 55422287 T - NEUROD4 3'UTR 0.29 TCGA-DM-A1HB-01 12 55863739 55863739 G A OR6C70 Missense_Mutation p.R62C 0.36 deleterious_low_confidence(0.02) benign(0.033) TCGA-DM-A1HB-01 12 56087082 56087082 G A ITGA7 Missense_Mutation p.S856L 0.37 tolerated(0.26) probably_damaging(0.961) TCGA-DM-A1HB-01 12 56755284 56755284 G A APOF Missense_Mutation p.P236S 0.37 tolerated(0.06) possibly_damaging(0.821) TCGA-DM-A1HB-01 12 57113233 57113233 G A NACA Intron 0.26 TCGA-DM-A1HB-01 12 57113425 57113425 T C NACA Intron 0.24 TCGA-DM-A1HB-01 12 57390433 57390433 A - GPR182 3'UTR 0.25 TCGA-DM-A1HB-01 12 57496256 57496256 A G STAT6 Silent p.A443A 0.42 TCGA-DM-A1HB-01 12 57522670 57522670 C - LRP1 5'UTR 0.26 TCGA-DM-A1HB-01 12 57892010 57892010 C A MARS Missense_Mutation p.L281I 0.05 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 12 58001373 58001373 G A DTX3 Missense_Mutation p.V243I 0.38 tolerated(0.39) benign(0.004) TCGA-DM-A1HB-01 12 6182858 6182858 G A VWF Silent p.C308C 0.37 TCGA-DM-A1HB-01 12 62902206 62902206 C T MON2 Silent p.C310C 0.34 TCGA-DM-A1HB-01 12 62919812 62919812 G T MON2 Missense_Mutation p.A444S 0.30 tolerated(0.06) benign(0.021) TCGA-DM-A1HB-01 12 64860680 64860680 G T TBK1 Splice_Site p.X120_splice 0.34 TCGA-DM-A1HB-01 12 663019 663019 G A B4GALNT3 Missense_Mutation p.D644N 0.40 deleterious(0.05) possibly_damaging(0.885) TCGA-DM-A1HB-01 12 6657974 6657974 C - IFFO1 Frame_Shift_Del p.R367Gfs*47 0.41 TCGA-DM-A1HB-01 12 6670196 6670196 G A NOP2 Silent p.D449D 0.35 TCGA-DM-A1HB-01 12 6788330 6788330 A G ZNF384 Missense_Mutation p.I29T 0.42 deleterious(0) possibly_damaging(0.694) TCGA-DM-A1HB-01 12 72148958 72148958 G T RAB21 Missense_Mutation p.A17S 0.48 tolerated(1) benign(0.001) TCGA-DM-A1HB-01 12 72863567 72863567 G A TRHDE Missense_Mutation p.A404T 0.33 deleterious(0) possibly_damaging(0.45) TCGA-DM-A1HB-01 12 75444936 75444936 C T KCNC2 Silent p.T283T 0.29 TCGA-DM-A1HB-01 12 7637944 7637944 A - CD163 Frame_Shift_Del p.Y843Tfs*38 0.22 TCGA-DM-A1HB-01 12 76444418 76444418 C A NAP1L1 Missense_Mutation p.A318S 0.43 tolerated(0.47) benign(0.068) TCGA-DM-A1HB-01 12 9001452 9001452 G A A2ML1 Missense_Mutation p.R657H 0.37 tolerated(0.34) benign(0.021) TCGA-DM-A1HB-01 12 90015429 90015429 T C ATP2B1 Missense_Mutation p.K495R 0.35 tolerated(0.46) benign(0.008) TCGA-DM-A1HB-01 12 91502708 91502708 T C LUM Missense_Mutation p.S17G 0.39 tolerated(0.34) benign(0) TCGA-DM-A1HB-01 13 103383314 103383314 G A CCDC168 Missense_Mutation p.A1949V 0.07 tolerated(0.07) unknown(0) TCGA-DM-A1HB-01 13 108882476 108882476 T C ABHD13 Missense_Mutation p.C304R 0.36 tolerated(0.16) possibly_damaging(0.746) TCGA-DM-A1HB-01 13 115057218 115057219 - G UPF3A Frame_Shift_Ins p.E267Rfs*4 0.11 TCGA-DM-A1HB-01 13 20024460 20024460 T C TPTE2 Missense_Mutation p.H276R 0.35 deleterious(0.04) benign(0.009) TCGA-DM-A1HB-01 13 20056655 20056655 T C TPTE2 Missense_Mutation p.E51G 0.05 tolerated(0.14) benign(0.001) TCGA-DM-A1HB-01 13 20717421 20717421 C T GJA3 Missense_Mutation p.D3N 0.29 deleterious(0) probably_damaging(0.954) TCGA-DM-A1HB-01 13 23777964 23777966 TCA - SGCG In_Frame_Del p.I46del 0.38 TCGA-DM-A1HB-01 13 25671399 25671399 G A PABPC3 Missense_Mutation p.G355S 0.35 tolerated(0.09) probably_damaging(0.989) TCGA-DM-A1HB-01 13 25672306 25672306 A - PABPC3 3'UTR 0.29 TCGA-DM-A1HB-01 13 27259836 27259836 A - WASF3 Frame_Shift_Del p.K456Rfs*61 0.31 TCGA-DM-A1HB-01 13 28519372 28519372 C T ATP5EP2 5'UTR 0.33 TCGA-DM-A1HB-01 13 28519580 28519580 G A ATP5EP2 3'UTR 0.06 TCGA-DM-A1HB-01 13 33095564 33095564 A G N4BP2L2 Missense_Mutation p.V70A 0.32 deleterious(0) probably_damaging(0.967) TCGA-DM-A1HB-01 13 36686200 36686200 G A DCLK1 Nonsense_Mutation p.R177* 0.37 TCGA-DM-A1HB-01 13 36744858 36744858 G A SOHLH2 Missense_Mutation p.A433V 0.38 tolerated(0.06) probably_damaging(0.935) TCGA-DM-A1HB-01 13 39611543 39611543 A - PROSER1 5'UTR 0.32 TCGA-DM-A1HB-01 13 53603177 53603177 T C OLFM4 Splice_Site p.X68_splice 0.39 TCGA-DM-A1HB-01 13 58208429 58208429 C T PCDH17 Silent p.I583I 0.23 TCGA-DM-A1HB-01 13 75884248 75884248 A G TBC1D4 Missense_Mutation p.L808P 0.32 deleterious(0.04) probably_damaging(0.981) TCGA-DM-A1HB-01 13 78335002 78335003 - G SLAIN1 Frame_Shift_Ins p.H323Afs*11 0.27 TCGA-DM-A1HB-01 13 88327973 88327973 G A SLITRK5 Silent p.L110L 0.35 TCGA-DM-A1HB-01 13 97999189 97999189 G A MBNL2 Silent p.G224G 0.27 TCGA-DM-A1HB-01 13 99907540 99907540 A - GPR18 Frame_Shift_Del p.F196Sfs*2 0.35 TCGA-DM-A1HB-01 14 103438377 103438377 C T CDC42BPB Missense_Mutation p.R588H 0.31 tolerated(0.13) probably_damaging(0.999) TCGA-DM-A1HB-01 14 105517642 105517642 C T GPR132 Missense_Mutation p.A278T 0.39 tolerated(0.43) benign(0.009) TCGA-DM-A1HB-01 14 19563232 19563232 T C POTEG Intron 0.50 TCGA-DM-A1HB-01 14 21859176 21859176 T - CHD8 Frame_Shift_Del p.N2371Ifs*6 0.26 TCGA-DM-A1HB-01 14 22133551 22133551 G T OR4E2 Missense_Mutation p.L85F 0.39 tolerated(0.9) benign(0.003) TCGA-DM-A1HB-01 14 23312574 23312574 C T MMP14 Missense_Mutation p.T266M 0.29 deleterious(0) probably_damaging(0.987) TCGA-DM-A1HB-01 14 23312611 23312611 C T MMP14 Silent p.G278G 0.34 TCGA-DM-A1HB-01 14 23524544 23524544 G A CDH24 Missense_Mutation p.R74W 0.36 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 14 24878372 24878372 A G NYNRIN Missense_Mutation p.S458G 0.34 deleterious_low_confidence(0) benign(0.156) TCGA-DM-A1HB-01 14 25288502 25288502 T C STXBP6 Intron 0.37 TCGA-DM-A1HB-01 14 29238079 29238079 G T FOXG1 3'UTR 0.05 TCGA-DM-A1HB-01 14 32562544 32562545 - T ARHGAP5 Frame_Shift_Ins p.E893* 0.30 TCGA-DM-A1HB-01 14 35255128 35255128 A G BAZ1A Silent p.A562A 0.52 TCGA-DM-A1HB-01 14 39716180 39716180 C T MIA2 Silent p.N134N 0.27 TCGA-DM-A1HB-01 14 44975555 44975556 - T FSCB Frame_Shift_Ins p.N212Kfs*12 0.27 TCGA-DM-A1HB-01 14 45433171 45433171 C A FAM179B Missense_Mutation p.A516D 0.29 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.24 TCGA-DM-A1HB-01 14 53529662 53529662 G A DDHD1 Missense_Mutation p.R589W 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A1HB-01 14 55819411 55819411 A - FBXO34 3'UTR 0.23 TCGA-DM-A1HB-01 14 55836166 55836166 G A ATG14 3'UTR 0.33 TCGA-DM-A1HB-01 14 62261793 62261793 A - SNAPC1 3'UTR 0.29 TCGA-DM-A1HB-01 14 63863383 63863383 T - PPP2R5E Frame_Shift_Del p.T201Qfs*26 0.26 TCGA-DM-A1HB-01 14 64542744 64542744 T C SYNE2 Missense_Mutation p.Y3650H 0.30 probably_damaging(0.999) TCGA-DM-A1HB-01 14 64554177 64554177 A G SYNE2 Intron 0.35 TCGA-DM-A1HB-01 14 65009483 65009483 A G HSPA2 Missense_Mutation p.D639G 0.32 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-DM-A1HB-01 14 73743166 73743166 T C NUMB 3'UTR 0.27 TCGA-DM-A1HB-01 14 76173432 76173432 T C TTLL5 Splice_Site p.X219_splice 0.42 TCGA-DM-A1HB-01 14 77229171 77229171 G - VASH1 Frame_Shift_Del p.K5Rfs*146 0.29 TCGA-DM-A1HB-01 14 77275933 77275933 G - ANGEL1 Frame_Shift_Del p.Q40Rfs*2 0.32 TCGA-DM-A1HB-01 14 77934491 77934491 G T AHSA1 Missense_Mutation p.M252I 0.30 tolerated(0.08) benign(0.025) TCGA-DM-A1HB-01 14 77942006 77942006 G A ISM2 Nonsense_Mutation p.R550* 0.39 TCGA-DM-A1HB-01 14 91636493 91636493 C T C14orf159 Missense_Mutation p.A135V 0.25 tolerated(0.34) benign(0.048) TCGA-DM-A1HB-01 14 92441033 92441033 C A TRIP11 Nonsense_Mutation p.G1838* 0.29 TCGA-DM-A1HB-01 14 93273144 93273144 C G GOLGA5 Nonsense_Mutation p.S203* 0.39 TCGA-DM-A1HB-01 14 94780998 94780998 C T SERPINA6 5'UTR 0.23 TCGA-DM-A1HB-01 14 94849248 94849248 C T SERPINA1 Silent p.T109T 0.28 TCGA-DM-A1HB-01 14 97319496 97319496 C A VRK1 Missense_Mutation p.P190H 0.39 deleterious(0) possibly_damaging(0.81) TCGA-DM-A1HB-01 15 20876510 20876510 A G NBEAP1 RNA 0.12 TCGA-DM-A1HB-01 15 23811534 23811534 A C MKRN3 Missense_Mutation p.D202A 0.33 deleterious(0.03) benign(0.038) TCGA-DM-A1HB-01 15 23931809 23931809 G A NDN Missense_Mutation p.P186S 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-DM-A1HB-01 15 27128605 27128605 C T GABRA5 Missense_Mutation p.T133M 0.44 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 15 28235724 28235724 C T OCA2 Missense_Mutation p.D372N 0.31 tolerated(0.05) benign(0.327) TCGA-DM-A1HB-01 15 28358283 28358283 G A HERC2 Silent p.F4722F 0.37 TCGA-DM-A1HB-01 15 30011279 30011279 C T TJP1 Missense_Mutation p.A1023T 0.29 tolerated_low_confidence(0.27) benign(0.002) TCGA-DM-A1HB-01 15 30029527 30029527 C T TJP1 Missense_Mutation p.V450I 0.40 tolerated(0.1) possibly_damaging(0.844) TCGA-DM-A1HB-01 15 34393995 34393996 - CAC EMC7 In_Frame_Ins p.L15_L16insV 0.08 TCGA-DM-A1HB-01 15 34673948 34673948 T C GOLGA8A Silent p.P521P 0.30 TCGA-DM-A1HB-01 15 35219334 35219334 A G AQR Silent p.A340A 0.27 TCGA-DM-A1HB-01 15 40099387 40099387 T - GPR176 Frame_Shift_Del p.N82Tfs*49 0.29 TCGA-DM-A1HB-01 15 41102108 41102108 A G ZFYVE19 Missense_Mutation p.T171A 0.16 tolerated(0.26) benign(0.024) TCGA-DM-A1HB-01 15 41804357 41804357 G A LTK Silent p.L156L 0.36 TCGA-DM-A1HB-01 15 42734269 42734269 A G ZNF106 Splice_Site p.X1232_splice 0.34 TCGA-DM-A1HB-01 15 43820388 43820388 T C MAP1A Silent p.P2239P 0.46 TCGA-DM-A1HB-01 15 45059507 45059507 A G TRIM69 Missense_Mutation p.H347R 0.32 deleterious(0.01) probably_damaging(0.954) TCGA-DM-A1HB-01 15 45706836 45706836 T C SPATA5L1 Missense_Mutation p.V501A 0.42 deleterious(0) benign(0.31) TCGA-DM-A1HB-01 15 48758016 48758016 C T FBN1 Missense_Mutation p.R1596Q 0.24 probably_damaging(0.968) TCGA-DM-A1HB-01 15 49170917 49170917 G T EID1 Nonsense_Mutation p.E182* 0.31 TCGA-DM-A1HB-01 15 49420018 49420018 G T COPS2 3'UTR 0.32 TCGA-DM-A1HB-01 15 52060515 52060515 C T TMOD2 Silent p.T61T 0.06 TCGA-DM-A1HB-01 15 55664204 55664204 C T CCPG1 Missense_Mutation p.D165N 0.28 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 15 56209013 56209013 C T NEDD4 Missense_Mutation p.R6Q 0.38 tolerated_low_confidence(0.08) probably_damaging(0.996) TCGA-DM-A1HB-01 15 57526306 57526306 G T TCF12 Splice_Site p.X345_splice 0.40 TCGA-DM-A1HB-01 15 59453296 59453296 C T MYO1E Missense_Mutation p.G921R 0.38 deleterious(0.02) probably_damaging(1) TCGA-DM-A1HB-01 15 62208166 62208166 G A VPS13C Missense_Mutation p.S2704L 0.22 deleterious(0) benign(0.409) TCGA-DM-A1HB-01 15 63004221 63004221 T G TLN2 Missense_Mutation p.L860R 0.25 deleterious(0) possibly_damaging(0.861) TCGA-DM-A1HB-01 15 63335031 63335031 G T TPM1 Translation_Start_Site p.M1? 0.39 deleterious(0) probably_damaging(0.968) TCGA-DM-A1HB-01 15 65502077 65502077 G T CILP Missense_Mutation p.A6D 0.06 deleterious_low_confidence(0.03) benign(0.358) TCGA-DM-A1HB-01 15 65983332 65983332 T - DENND4A Frame_Shift_Del p.K1199Nfs*49 0.23 TCGA-DM-A1HB-01 15 66604135 66604135 G A DIS3L Missense_Mutation p.R211Q 0.46 tolerated(0.57) benign(0.005) TCGA-DM-A1HB-01 15 67571790 67571790 T C IQCH Silent p.G109G 0.40 TCGA-DM-A1HB-01 15 69003140 69003140 G A CORO2B Missense_Mutation p.G135R 0.45 deleterious(0) probably_damaging(0.996) TCGA-DM-A1HB-01 15 69737382 69737382 T A KIF23 Splice_Site p.X877_splice 0.41 TCGA-DM-A1HB-01 15 72559091 72559091 C T PARP6 Missense_Mutation p.V26I 0.35 tolerated_low_confidence(0.42) benign(0.002) TCGA-DM-A1HB-01 15 72972372 72972372 T A HIGD2B 5'UTR 0.15 TCGA-DM-A1HB-01 15 73562484 73562484 C T NEO1 Silent p.D876D 0.25 TCGA-DM-A1HB-01 15 74238834 74238834 G T LOXL1 Missense_Mutation p.G430C 0.36 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 15 74315741 74315742 - G PML Frame_Shift_Ins p.K394Efs*22 0.47 TCGA-DM-A1HB-01 15 74912508 74912508 G A CLK3 Missense_Mutation p.R252H 0.45 tolerated(0.07) possibly_damaging(0.556) TCGA-DM-A1HB-01 15 75500778 75500778 G A C15orf39 Missense_Mutation p.A797T 0.28 tolerated(0.11) benign(0.093) TCGA-DM-A1HB-01 15 75586361 75586361 T C GOLGA6D Splice_Site p.X600_splice 0.32 TCGA-DM-A1HB-01 15 76016453 76016453 G - ODF3L1 5'UTR 0.34 TCGA-DM-A1HB-01 15 78780140 78780140 T A IREB2 Missense_Mutation p.V592D 0.33 deleterious(0) possibly_damaging(0.794) TCGA-DM-A1HB-01 15 79215392 79215392 T - CTSH Frame_Shift_Del p.N292Mfs*8 0.23 TCGA-DM-A1HB-01 15 82336361 82336361 A G MEX3B Missense_Mutation p.Y284H 0.36 tolerated(0.13) probably_damaging(0.921) TCGA-DM-A1HB-01 15 83334306 83334306 C A AP3B2 Missense_Mutation p.G625V 0.41 deleterious(0) probably_damaging(0.991) TCGA-DM-A1HB-01 15 83434691 83434691 C - FSD2 Frame_Shift_Del p.G549Afs*4 0.21 TCGA-DM-A1HB-01 15 84566627 84566627 C T ADAMTSL3 Silent p.G495G 0.37 TCGA-DM-A1HB-01 15 84868517 84868517 C A AC136698.1 3'Flank 0.18 TCGA-DM-A1HB-01 15 86287952 86287952 A G AKAP13 3'UTR 0.44 TCGA-DM-A1HB-01 15 90167399 90167399 T A TICRR Missense_Mutation p.D1286E 0.26 tolerated(0.79) benign(0.005) TCGA-DM-A1HB-01 15 90610819 90610819 G A ZNF710 Silent p.L150L 0.44 TCGA-DM-A1HB-01 15 91010722 91010722 T C IQGAP1 Silent p.G692G 0.43 TCGA-DM-A1HB-01 15 91306383 91306383 G A BLM Silent p.P690P 0.37 TCGA-DM-A1HB-01 15 91358536 91358536 C A BLM 3'UTR 0.35 TCGA-DM-A1HB-01 15 98513913 98513913 C A ARRDC4 Nonsense_Mutation p.C380* 0.37 TCGA-DM-A1HB-01 16 11772616 11772616 T - SNN 3'UTR 0.35 TCGA-DM-A1HB-01 16 15092215 15092215 T C PDXDC1 Silent p.N38N 0.12 TCGA-DM-A1HB-01 16 15489931 15489931 C T MPV17L Silent p.H59H 0.30 TCGA-DM-A1HB-01 16 15694352 15694352 G A KIAA0430 Silent p.G1582G 0.35 TCGA-DM-A1HB-01 16 1584228 1584228 G A TMEM204 5'UTR 0.41 TCGA-DM-A1HB-01 16 1637270 1637270 A G IFT140 Missense_Mutation p.L313P 0.45 deleterious(0) probably_damaging(0.986) TCGA-DM-A1HB-01 16 19547828 19547828 G C CCP110 Missense_Mutation p.Q279H 0.32 tolerated(0.08) benign(0.24) TCGA-DM-A1HB-01 16 19883499 19883499 G A GPRC5B Silent p.C223C 0.40 TCGA-DM-A1HB-01 16 20330950 20330950 G T GP2 Silent p.P336P 0.04 TCGA-DM-A1HB-01 16 22108234 22108234 T C VWA3A Silent p.H23H 0.37 TCGA-DM-A1HB-01 16 22358841 22358841 T C CDR2 Silent p.G270G 0.24 TCGA-DM-A1HB-01 16 2285627 2285627 G A E4F1 3'UTR 0.34 TCGA-DM-A1HB-01 16 2287943 2287943 G A DNASE1L2 Missense_Mutation p.R256H 0.48 tolerated(0.29) benign(0.009) TCGA-DM-A1HB-01 16 23079650 23079650 A C USP31 Missense_Mutation p.V1259G 0.35 tolerated_low_confidence(0.43) benign(0.055) TCGA-DM-A1HB-01 16 2334936 2334936 G A ABCA3 Silent p.L1183L 0.39 TCGA-DM-A1HB-01 16 2347358 2347358 C - ABCA3 Frame_Shift_Del p.S746Pfs*15 0.24 TCGA-DM-A1HB-01 16 23504780 23504780 C A GGA2 Splice_Site p.X85_splice 0.29 TCGA-DM-A1HB-01 16 23701327 23701327 T C PLK1 Silent p.T585T 0.34 TCGA-DM-A1HB-01 16 28601970 28601970 C T CCDC101 Silent p.I195I 0.39 TCGA-DM-A1HB-01 16 28898974 28898974 T C ATP2A1 Missense_Mutation p.S287P 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-DM-A1HB-01 16 2988278 2988278 G T FLYWCH1 Missense_Mutation p.G623V 0.38 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 16 29891339 29891339 A C SEZ6L2 Missense_Mutation p.N473K 0.33 deleterious(0) probably_damaging(0.99) TCGA-DM-A1HB-01 16 29998806 29998806 G A TAOK2 Silent p.R1071R 0.37 TCGA-DM-A1HB-01 16 30096309 30096309 A G PPP4C Missense_Mutation p.I284V 0.28 tolerated(0.56) benign(0) TCGA-DM-A1HB-01 16 30129397 30129397 G A MAPK3 Missense_Mutation p.R211W 0.26 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 16 30196724 30196724 G A CORO1A Missense_Mutation p.G65D 0.38 tolerated(0.62) benign(0.019) TCGA-DM-A1HB-01 16 30724638 30724638 A C SRCAP Missense_Mutation p.E747A 0.30 unknown(0) TCGA-DM-A1HB-01 16 30734296 30734296 T C SRCAP Missense_Mutation p.M1302T 0.22 benign(0.042) TCGA-DM-A1HB-01 16 3080722 3080722 G A CCDC64B Missense_Mutation p.T197M 0.38 tolerated(0.13) benign(0.21) TCGA-DM-A1HB-01 16 31202856 31202856 T - FUS 3'UTR 0.28 TCGA-DM-A1HB-01 16 31341433 31341433 G A ITGAM Missense_Mutation p.R1004H 0.46 tolerated(0.11) benign(0.005) TCGA-DM-A1HB-01 16 31388553 31388553 C T ITGAX Missense_Mutation p.P919L 0.35 deleterious(0.02) probably_damaging(1) TCGA-DM-A1HB-01 16 31494496 31494496 G - SLC5A2 Frame_Shift_Del p.A15Pfs*5 0.28 TCGA-DM-A1HB-01 16 33020672 33020672 G T IGHV3OR16-8 Missense_Mutation p.G27V 0.30 deleterious_low_confidence(0.02) probably_damaging(0.947) TCGA-DM-A1HB-01 16 3614423 3614423 G A NLRC3 Missense_Mutation p.S219L 0.35 tolerated(0.15) benign(0.12) TCGA-DM-A1HB-01 16 3721760 3721760 G T TRAP1 Missense_Mutation p.L400I 0.35 deleterious(0.02) probably_damaging(1) TCGA-DM-A1HB-01 16 3788675 3788675 T C CREBBP Splice_Site p.X1427_splice 0.43 TCGA-DM-A1HB-01 16 4254546 4254546 C T SRL Missense_Mutation p.D51N 0.35 tolerated(0.07) benign(0.08) TCGA-DM-A1HB-01 16 4930088 4930088 T G UBN1 Silent p.A1120A 0.41 TCGA-DM-A1HB-01 16 50257238 50257238 A - PAPD5 Frame_Shift_Del p.N427Ifs*3 0.27 TCGA-DM-A1HB-01 16 50701845 50701845 G - SNX20 3'Flank 0.39 TCGA-DM-A1HB-01 16 53860175 53860175 G T FTO Missense_Mutation p.D175Y 0.37 deleterious(0) probably_damaging(0.933) TCGA-DM-A1HB-01 16 54319983 54319983 C T IRX3 5'UTR 0.47 TCGA-DM-A1HB-01 16 55364420 55364420 C T IRX6 3'UTR 0.44 TCGA-DM-A1HB-01 16 57417051 57417051 G - CX3CL1 3'UTR 0.44 TCGA-DM-A1HB-01 16 57503929 57503929 A - POLR2C Frame_Shift_Del p.K167Rfs*26 0.24 TCGA-DM-A1HB-01 16 613389 613389 G A C16orf11 Missense_Mutation p.G32D 0.34 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 16 626057 626057 G A PIGQ Intron 0.26 TCGA-DM-A1HB-01 16 65005561 65005561 C A CDH11 Silent p.T521T 0.35 TCGA-DM-A1HB-01 16 66511534 66511534 C - BEAN1 Frame_Shift_Del p.P122Hfs*50 0.30 TCGA-DM-A1HB-01 16 66951968 66951968 T C CDH16 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-DM-A1HB-01 16 67154081 67154081 T C C16orf70 Missense_Mutation p.V44A 0.07 deleterious(0) possibly_damaging(0.595) TCGA-DM-A1HB-01 16 67234167 67234167 C T ELMO3 Missense_Mutation p.R159C 0.36 deleterious(0.02) possibly_damaging(0.663) TCGA-DM-A1HB-01 16 67264306 67264306 G A FHOD1 Missense_Mutation p.R988W 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 16 67682618 67682618 G A RLTPR Silent p.T490T 0.43 TCGA-DM-A1HB-01 16 67864553 67864553 C T CENPT Intron 0.43 TCGA-DM-A1HB-01 16 67916707 67916707 G A EDC4 Missense_Mutation p.A1190T 0.25 tolerated(0.18) benign(0.03) TCGA-DM-A1HB-01 16 67917844 67917844 C - EDC4 Intron 0.28 TCGA-DM-A1HB-01 16 67997907 67997907 G A SLC12A4 Intron 0.30 TCGA-DM-A1HB-01 16 68309065 68309065 A G SLC7A6 Missense_Mutation p.T146A 0.34 deleterious(0) probably_damaging(0.984) TCGA-DM-A1HB-01 16 68853294 68853294 C T CDH1 Silent p.S559S 0.35 TCGA-DM-A1HB-01 16 69154202 69154202 G C CHTF8 Missense_Mutation p.L44V 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-DM-A1HB-01 16 69358163 69358163 A G VPS4A Missense_Mutation p.D422G 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-DM-A1HB-01 16 69385564 69385564 C T TMED6 Silent p.G31G 0.33 TCGA-DM-A1HB-01 16 70916793 70916793 C T HYDIN Missense_Mutation p.V3329M 0.31 probably_damaging(0.938) TCGA-DM-A1HB-01 16 70934983 70934983 G - HYDIN Frame_Shift_Del p.P2991Lfs*28 0.13 TCGA-DM-A1HB-01 16 72057444 72057444 G A DHODH Missense_Mutation p.A349T 0.35 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 16 72110800 72110800 G T HPR Missense_Mutation p.Q289H 0.37 tolerated(0.08) benign(0.082) TCGA-DM-A1HB-01 16 72845830 72845830 T - ZFHX3 Frame_Shift_Del p.T1213Qfs*31 0.19 TCGA-DM-A1HB-01 16 72993615 72993615 C T ZFHX3 Missense_Mutation p.V144M 0.34 probably_damaging(0.969) TCGA-DM-A1HB-01 16 76482813 76482813 C T CNTNAP4 Missense_Mutation p.R273W 0.41 tolerated(0.07) benign(0.001) TCGA-DM-A1HB-01 16 76555139 76555139 C T CNTNAP4 Missense_Mutation p.T750I 0.38 deleterious(0) probably_damaging(0.987) TCGA-DM-A1HB-01 16 79632635 79632635 C T MAF Intron 0.42 TCGA-DM-A1HB-01 16 84100206 84100206 C T MBTPS1 Missense_Mutation p.M747I 0.09 tolerated(0.47) benign(0.007) TCGA-DM-A1HB-01 16 84213285 84213285 G - TAF1C Frame_Shift_Del p.T625Qfs*16 0.27 TCGA-DM-A1HB-01 16 84495339 84495339 G T ATP2C2 Missense_Mutation p.S834I 0.35 tolerated(0.71) benign(0.012) TCGA-DM-A1HB-01 16 85701888 85701888 C - GSE1 Frame_Shift_Del p.P1093Qfs*45 0.30 TCGA-DM-A1HB-01 16 87446129 87446129 A G ZCCHC14 Missense_Mutation p.V596A 0.46 tolerated_low_confidence(0.18) benign(0.045) TCGA-DM-A1HB-01 16 87866620 87866620 C T SLC7A5 Missense_Mutation p.V494I 0.37 tolerated(0.43) benign(0.006) TCGA-DM-A1HB-01 16 88505217 88505218 - C ZNF469 Frame_Shift_Ins p.A3754Rfs*17 0.25 TCGA-DM-A1HB-01 16 89347190 89347190 C A ANKRD11 Silent p.T1920T 0.41 TCGA-DM-A1HB-01 16 89350570 89350572 TCT - ANKRD11 In_Frame_Del p.K793del 0.35 TCGA-DM-A1HB-01 16 89929886 89929886 G C SPIRE2 Missense_Mutation p.E526D 0.30 deleterious(0.01) benign(0.309) TCGA-DM-A1HB-01 16 9857152 9857152 G A GRIN2A Missense_Mutation p.R1417W 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-DM-A1HB-01 16 9857788 9857788 C T GRIN2A Missense_Mutation p.E1205K 0.34 tolerated(0.17) benign(0.105) TCGA-DM-A1HB-01 16 9857910 9857910 G A GRIN2A Missense_Mutation p.T1164M 0.35 tolerated(0.15) benign(0.358) TCGA-DM-A1HB-01 17 10248833 10248833 C T MYH13 Missense_Mutation p.R455K 0.36 deleterious(0.01) probably_damaging(0.965) TCGA-DM-A1HB-01 17 10399440 10399440 G A MYH1 Missense_Mutation p.R1666W 0.35 deleterious(0) possibly_damaging(0.883) TCGA-DM-A1HB-01 17 12893529 12893529 G T ARHGAP44 3'UTR 0.32 TCGA-DM-A1HB-01 17 1373557 1373557 C T MYO1C Missense_Mutation p.R813H 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A1HB-01 17 1636003 1636003 C A WDR81 Missense_Mutation p.P1456Q 0.40 tolerated(0.32) benign(0.059) TCGA-DM-A1HB-01 17 17106258 17106258 G A PLD6 Silent p.Y194Y 0.40 TCGA-DM-A1HB-01 17 17158252 17158252 A - COPS3 Frame_Shift_Del p.L315* 0.16 TCGA-DM-A1HB-01 17 1779041 1779041 C G RPA1 Missense_Mutation p.Q181E 0.36 tolerated(0.95) benign(0.045) TCGA-DM-A1HB-01 17 18023293 18023293 C - MYO15A Frame_Shift_Del p.E396Rfs*48 0.27 TCGA-DM-A1HB-01 17 18077227 18077227 C T MYO15A Silent p.L3495L 0.34 TCGA-DM-A1HB-01 17 1840991 1840991 G A RTN4RL1 Missense_Mutation p.A42V 0.43 deleterious(0.02) probably_damaging(0.98) TCGA-DM-A1HB-01 17 18855525 18855525 G A SLC5A10 Missense_Mutation p.A3T 0.35 tolerated_low_confidence(0.64) benign(0.002) TCGA-DM-A1HB-01 17 18881040 18881040 G A FAM83G Missense_Mutation p.R647W 0.39 deleterious(0) possibly_damaging(0.87) TCGA-DM-A1HB-01 17 18918399 18918399 G A SLC5A10 Silent p.A392A 0.43 TCGA-DM-A1HB-01 17 18945147 18945147 T G GRAP Missense_Mutation p.K50T 0.21 deleterious(0.03) possibly_damaging(0.787) TCGA-DM-A1HB-01 17 19746537 19746537 T C ULK2 Splice_Site p.X182_splice 0.27 TCGA-DM-A1HB-01 17 21319207 21319207 G A KCNJ12 Missense_Mutation p.A185T 0.06 tolerated(0.19) possibly_damaging(0.847) TCGA-DM-A1HB-01 17 27068996 27068996 C - NEK8 Frame_Shift_Del p.*693Efs*11 0.30 TCGA-DM-A1HB-01 17 27076666 27076666 G A TRAF4 3'UTR 0.28 TCGA-DM-A1HB-01 17 27296972 27296972 T C SEZ6 Splice_Site p.X287_splice 0.33 TCGA-DM-A1HB-01 17 2930237 2930237 G - RAP1GAP2 Splice_Site p.X661_splice 0.25 TCGA-DM-A1HB-01 17 32583759 32583759 C T CCL2 Silent p.A71A 0.40 TCGA-DM-A1HB-01 17 32959886 32959886 G T TMEM132E Missense_Mutation p.S459I 0.40 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 17 34863247 34863247 G A MYO19 Silent p.L486L 0.37 TCGA-DM-A1HB-01 17 39137369 39137369 C T KRT40 Missense_Mutation p.R241H 0.44 deleterious(0.02) benign(0.043) TCGA-DM-A1HB-01 17 39596913 39596913 G T KRT38 Silent p.G87G 0.32 TCGA-DM-A1HB-01 17 39620622 39620622 A G KRT32 Missense_Mutation p.L261P 0.28 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 17 39768797 39768797 G A KRT16 Silent p.G48G 0.27 TCGA-DM-A1HB-01 17 40273131 40273131 C T KAT2A Silent p.G64G 0.11 TCGA-DM-A1HB-01 17 40364131 40364131 G A STAT5B Silent p.A517A 0.35 TCGA-DM-A1HB-01 17 40371847 40371847 C T STAT5B Silent p.P188P 0.41 TCGA-DM-A1HB-01 17 40459418 40459418 A G STAT5A Splice_Site p.X561_splice 0.35 TCGA-DM-A1HB-01 17 41006611 41006612 - C AOC3 Frame_Shift_Ins p.R585Sfs*60 0.23 TCGA-DM-A1HB-01 17 41223038 41223038 A G BRCA1 Silent p.S1652S 0.32 TCGA-DM-A1HB-01 17 422476 422476 C A VPS53 Silent p.P797P 0.37 TCGA-DM-A1HB-01 17 42340009 42340009 G A SLC4A1 Missense_Mutation p.P34L 0.38 tolerated(0.14) benign(0.085) TCGA-DM-A1HB-01 17 42429802 42429802 C T GRN Nonsense_Mutation p.Q503* 0.29 TCGA-DM-A1HB-01 17 42431629 42431629 C T FAM171A2 Silent p.P651P 0.52 TCGA-DM-A1HB-01 17 43192762 43192762 C A PLCD3 Missense_Mutation p.E503D 0.46 tolerated(0.37) benign(0.005) TCGA-DM-A1HB-01 17 45008504 45008504 T C GOSR2 Missense_Mutation p.F45S 0.36 tolerated(0.44) benign(0.018) TCGA-DM-A1HB-01 17 45380166 45380166 T C ITGB3 Silent p.D698D 0.36 TCGA-DM-A1HB-01 17 48165731 48165731 G C ITGA3 Intron 0.32 TCGA-DM-A1HB-01 17 48458289 48458289 A G EME1 Missense_Mutation p.S581G 0.39 tolerated(0.23) benign(0.017) TCGA-DM-A1HB-01 17 5336321 5336321 A T C1QBP 3'UTR 0.43 TCGA-DM-A1HB-01 17 55752293 55752293 A G MSI2 Intron 0.50 TCGA-DM-A1HB-01 17 56356572 56356572 G A MPO Missense_Mutation p.R228C 0.44 deleterious(0.01) probably_damaging(0.982) TCGA-DM-A1HB-01 17 58756885 58756885 C T BCAS3 Missense_Mutation p.R23C 0.30 tolerated(0.1) probably_damaging(0.998) TCGA-DM-A1HB-01 17 59489681 59489681 A G C17orf82 Silent p.G115G 0.32 TCGA-DM-A1HB-01 17 61909089 61909089 G A PSMC5 Silent p.V362V 0.41 TCGA-DM-A1HB-01 17 61949431 61949431 C - CSH2 3'UTR 0.14 TCGA-DM-A1HB-01 17 64881205 64881205 G A CACNG5 Missense_Mutation p.D226N 0.28 deleterious(0.01) probably_damaging(0.937) TCGA-DM-A1HB-01 17 6594219 6594219 G A SLC13A5 Missense_Mutation p.P439L 0.28 deleterious(0.01) benign(0.41) TCGA-DM-A1HB-01 17 66247257 66247257 T C AMZ2 Missense_Mutation p.M175T 0.31 deleterious(0.04) benign(0.178) TCGA-DM-A1HB-01 17 67075367 67075367 T C ABCA6 Missense_Mutation p.Q1579R 0.35 deleterious(0.03) probably_damaging(0.993) TCGA-DM-A1HB-01 17 67111053 67111054 - T ABCA6 Frame_Shift_Ins p.N544Kfs*4 0.26 TCGA-DM-A1HB-01 17 6913097 6913097 A G ALOX12 Silent p.Q524Q 0.30 TCGA-DM-A1HB-01 17 6942164 6942164 A G SLC16A13 Missense_Mutation p.Q346R 0.42 tolerated(0.05) probably_damaging(0.971) TCGA-DM-A1HB-01 17 7132480 7132480 T C DVL2 Missense_Mutation p.I311V 0.14 deleterious(0.03) possibly_damaging(0.45) TCGA-DM-A1HB-01 17 71394282 71394282 G - SDK2 Frame_Shift_Del p.S1083Vfs*66 0.35 TCGA-DM-A1HB-01 17 72306157 72306157 T C DNAI2 Missense_Mutation p.V450A 0.35 deleterious(0.01) benign(0.259) TCGA-DM-A1HB-01 17 72443255 72443255 C T GPRC5C 3'UTR 0.39 TCGA-DM-A1HB-01 17 72694550 72694550 C T CD300LF Missense_Mutation p.A173T 0.31 tolerated(0.07) benign(0.147) TCGA-DM-A1HB-01 17 7324618 7324618 C - SPEM1 Frame_Shift_Del p.P210Hfs*51 0.28 TCGA-DM-A1HB-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.30 TCGA-DM-A1HB-01 17 73499827 73499827 G A CASKIN2 Silent p.I531I 0.46 TCGA-DM-A1HB-01 17 73871167 73871169 GTC - TRIM47 In_Frame_Del p.D438del 0.24 TCGA-DM-A1HB-01 17 74134114 74134114 G A FOXJ1 Missense_Mutation p.R196C 0.46 deleterious(0) probably_damaging(0.938) TCGA-DM-A1HB-01 17 7484875 7484875 G - CD68 3'UTR 0.29 TCGA-DM-A1HB-01 17 75471971 75471971 G A SEPT9 Intron 0.27 TCGA-DM-A1HB-01 17 76117070 76117070 A C TMC6 Intron 0.22 TCGA-DM-A1HB-01 17 76167906 76167906 C T SYNGR2 Silent p.P188P 0.41 TCGA-DM-A1HB-01 17 76450732 76450732 G A DNAH17 Missense_Mutation p.A3395V 0.35 possibly_damaging(0.761) TCGA-DM-A1HB-01 17 7812504 7812504 C T CHD3 Missense_Mutation p.A1872V 0.42 benign(0) TCGA-DM-A1HB-01 17 79612317 79612317 G - TSPAN10 Frame_Shift_Del p.L116Cfs*19 0.29 TCGA-DM-A1HB-01 17 79871660 79871660 C T SIRT7 Missense_Mutation p.A332T 0.08 tolerated(0.56) benign(0.001) TCGA-DM-A1HB-01 17 79995531 79995531 C A DCXR Missense_Mutation p.V10L 0.51 deleterious(0.04) benign(0.002) TCGA-DM-A1HB-01 17 80332442 80332442 G A UTS2R Missense_Mutation p.R81H 0.36 tolerated(0.14) benign(0.082) TCGA-DM-A1HB-01 17 8383481 8383481 T C MYH10 Silent p.S1848S 0.24 TCGA-DM-A1HB-01 17 9281924 9281924 T - STX8 Frame_Shift_Del p.K196Nfs*9 0.25 TCGA-DM-A1HB-01 18 11853674 11853674 A G CHMP1B 3'UTR 0.41 TCGA-DM-A1HB-01 18 15323273 15323273 G C RNU6-721P 5'Flank 0.35 TCGA-DM-A1HB-01 18 18531173 18531173 A - ROCK1 3'UTR 0.52 TCGA-DM-A1HB-01 18 21059376 21059376 T - RIOK3 Frame_Shift_Del p.L482* 0.27 TCGA-DM-A1HB-01 18 21111681 21111681 T - NPC1 3'UTR 0.24 TCGA-DM-A1HB-01 18 21140212 21140212 A - NPC1 Frame_Shift_Del p.F288Lfs*22 0.26 TCGA-DM-A1HB-01 18 21892069 21892069 T C OSBPL1A Missense_Mutation p.D324G 0.42 tolerated(0.05) benign(0) TCGA-DM-A1HB-01 18 2567032 2567032 A T METTL4 Missense_Mutation p.F62I 0.35 tolerated(0.32) benign(0.049) TCGA-DM-A1HB-01 18 29800270 29800270 G A MEP1B 3'UTR 0.43 TCGA-DM-A1HB-01 18 30795599 30795599 A - CCDC178 Frame_Shift_Del p.Y665Mfs*4 0.27 TCGA-DM-A1HB-01 18 31325497 31325497 A G ASXL3 Silent p.K1895K 0.34 TCGA-DM-A1HB-01 18 31803006 31803006 C T NOL4 Missense_Mutation p.R71H 0.32 tolerated(0.1) benign(0.252) TCGA-DM-A1HB-01 18 32889812 32889812 A G ZNF271 RNA 0.31 TCGA-DM-A1HB-01 18 347255 347255 G A COLEC12 Missense_Mutation p.R123C 0.37 deleterious(0.03) possibly_damaging(0.725) TCGA-DM-A1HB-01 18 44561089 44561089 C T TCEB3B Missense_Mutation p.G183S 0.38 tolerated(0.41) benign(0.283) TCGA-DM-A1HB-01 18 47015907 47015907 T C RPL17 Missense_Mutation p.D110G 0.36 tolerated(0.09) possibly_damaging(0.843) TCGA-DM-A1HB-01 18 47799780 47799780 G A MBD1 Missense_Mutation p.A503V 0.31 tolerated_low_confidence(0.34) benign(0.032) TCGA-DM-A1HB-01 18 50683813 50683813 G A DCC Missense_Mutation p.R450H 0.38 deleterious(0.01) probably_damaging(0.981) TCGA-DM-A1HB-01 18 50866123 50866123 G T DCC Missense_Mutation p.R735S 0.33 deleterious(0) probably_damaging(0.984) TCGA-DM-A1HB-01 18 61468156 61468156 T C SERPINB7 Silent p.V218V 0.35 TCGA-DM-A1HB-01 18 6311630 6311630 C - L3MBTL4 5'UTR 0.24 TCGA-DM-A1HB-01 18 7033058 7033058 A G LAMA1 Silent p.N696N 0.54 TCGA-DM-A1HB-01 18 70451078 70451078 C T NETO1 Missense_Mutation p.A235T 0.23 deleterious(0.04) possibly_damaging(0.652) TCGA-DM-A1HB-01 18 74074438 74074438 G A ZNF516 3'UTR 0.36 TCGA-DM-A1HB-01 18 745962 745963 CT - YES1 Frame_Shift_Del p.S187* 0.21 TCGA-DM-A1HB-01 18 7567788 7567788 G A PTPRM 5'UTR 0.39 TCGA-DM-A1HB-01 18 77246652 77246652 A G NFATC1 Missense_Mutation p.S820G 0.50 tolerated(0.4) benign(0.002) TCGA-DM-A1HB-01 18 77475442 77475442 C T CTDP1 Missense_Mutation p.T661M 0.47 deleterious(0.04) probably_damaging(0.993) TCGA-DM-A1HB-01 18 77896426 77896426 A - ADNP2 Frame_Shift_Del p.K1045Nfs*29 0.27 TCGA-DM-A1HB-01 18 9257898 9257898 A G ANKRD12 Missense_Mutation p.T1545A 0.38 tolerated_low_confidence(0.05) benign(0) TCGA-DM-A1HB-01 19 1053356 1053356 G A ABCA7 Silent p.Q1083Q 0.39 TCGA-DM-A1HB-01 19 10677901 10677901 G T CDKN2D Missense_Mutation p.H112N 0.36 deleterious(0) possibly_damaging(0.882) TCGA-DM-A1HB-01 19 11030580 11030580 G T CARM1 Missense_Mutation p.M378I 0.49 tolerated(0.35) benign(0.054) TCGA-DM-A1HB-01 19 1109598 1109598 C A SBNO2 Splice_Site p.X1042_splice 0.37 TCGA-DM-A1HB-01 19 1149384 1149384 A C SBNO2 Missense_Mutation p.F51V 0.43 tolerated_low_confidence(0.09) benign(0.08) TCGA-DM-A1HB-01 19 11546952 11546952 T C PRKCSH Missense_Mutation p.L5P 0.40 deleterious(0.01) unknown(0) TCGA-DM-A1HB-01 19 12127219 12127219 A - ZNF433 Frame_Shift_Del p.S155Pfs*36 0.26 TCGA-DM-A1HB-01 19 1235045 1235045 G A C19orf26 Missense_Mutation p.A137V 0.38 deleterious(0) probably_damaging(0.975) TCGA-DM-A1HB-01 19 12740043 12740044 - A ZNF791 Frame_Shift_Ins p.H570Tfs*12 0.24 TCGA-DM-A1HB-01 19 12812152 12812152 A G TNPO2 3'UTR 0.40 TCGA-DM-A1HB-01 19 12902958 12902958 G - JUNB Frame_Shift_Del p.G126Afs*24 0.23 TCGA-DM-A1HB-01 19 12903368 12903368 C A JUNB Silent p.I261I 0.43 TCGA-DM-A1HB-01 19 13988375 13988375 C T NANOS3 Missense_Mutation p.P105S 0.35 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 19 1398886 1398886 G A GAMT Missense_Mutation p.S200F 0.27 tolerated_low_confidence(0.09) benign(0.102) TCGA-DM-A1HB-01 19 1399792 1399792 C A GAMT Missense_Mutation p.K109N 0.38 tolerated(0.37) benign(0.025) TCGA-DM-A1HB-01 19 14029729 14029730 - C CC2D1A Frame_Shift_Ins p.P344Tfs*59 0.30 TCGA-DM-A1HB-01 19 14627326 14627326 C T DNAJB1 Silent p.K248K 0.31 TCGA-DM-A1HB-01 19 15230274 15230274 A G ILVBL Missense_Mutation p.L290P 0.29 deleterious(0) probably_damaging(0.969) TCGA-DM-A1HB-01 19 15533942 15533942 G - WIZ Frame_Shift_Del p.P777Hfs*152 0.23 TCGA-DM-A1HB-01 19 15535155 15535155 G T WIZ Silent p.A688A 0.37 TCGA-DM-A1HB-01 19 16926153 16926153 A - NWD1 3'UTR 0.33 TCGA-DM-A1HB-01 19 17169414 17169414 C T HAUS8 Missense_Mutation p.R197H 0.32 deleterious(0.02) benign(0.287) TCGA-DM-A1HB-01 19 17566422 17566422 A G NXNL1 3'UTR 0.41 TCGA-DM-A1HB-01 19 18119579 18119579 C T ARRDC2 Silent p.L112L 0.48 TCGA-DM-A1HB-01 19 18368239 18368239 G A KIAA1683 Silent p.S1285S 0.35 TCGA-DM-A1HB-01 19 18555661 18555661 G A ELL Silent p.S589S 0.37 TCGA-DM-A1HB-01 19 18899120 18899120 G A COMP Silent p.C292C 0.24 TCGA-DM-A1HB-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.22 TCGA-DM-A1HB-01 19 19230658 19230658 G A TMEM161A 3'UTR 0.40 TCGA-DM-A1HB-01 19 19308369 19308369 C - RFXANK Frame_Shift_Del p.L128Sfs*76 0.24 TCGA-DM-A1HB-01 19 19308409 19308409 C T RFXANK Silent p.T139T 0.25 TCGA-DM-A1HB-01 19 19308923 19308924 - C RFXANK Frame_Shift_Ins p.H151Pfs*30 0.22 TCGA-DM-A1HB-01 19 19339369 19339369 A G NCAN Silent p.V980V 0.35 TCGA-DM-A1HB-01 19 19369613 19369613 G A HAPLN4 Missense_Mutation p.A179V 0.27 tolerated(0.38) benign(0.094) TCGA-DM-A1HB-01 19 19744621 19744621 T C GMIP Silent p.T821T 0.39 TCGA-DM-A1HB-01 19 1997458 1997458 C T BTBD2 Missense_Mutation p.V138M 0.38 deleterious(0) probably_damaging(0.986) TCGA-DM-A1HB-01 19 2138666 2138666 C T AP3D1 Silent p.K48K 0.33 TCGA-DM-A1HB-01 19 22585619 22585619 C T ZNF98 Silent p.K75K 0.39 TCGA-DM-A1HB-01 19 34302308 34302308 G A KCTD15 Missense_Mutation p.A182T 0.47 tolerated(1) benign(0.004) TCGA-DM-A1HB-01 19 34685410 34685410 C T LSM14A Missense_Mutation p.P50L 0.05 deleterious(0) benign(0.065) TCGA-DM-A1HB-01 19 36227647 36227647 G A KMT2B Missense_Mutation p.A2406T 0.39 benign(0.118) TCGA-DM-A1HB-01 19 36431683 36431683 G A LRFN3 Silent p.P452P 0.39 TCGA-DM-A1HB-01 19 37037816 37037816 A G ZNF529 Silent p.H548H 0.36 TCGA-DM-A1HB-01 19 37038112 37038112 A G ZNF529 Missense_Mutation p.Y450H 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-DM-A1HB-01 19 37117884 37117884 G A ZNF382 Missense_Mutation p.R362H 0.43 tolerated(0.35) benign(0.025) TCGA-DM-A1HB-01 19 37130904 37130904 T - ZNF461 Frame_Shift_Del p.R115Gfs*52 0.22 TCGA-DM-A1HB-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.22 TCGA-DM-A1HB-01 19 38230655 38230655 A G ZNF573 Missense_Mutation p.Y246H 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-DM-A1HB-01 19 3825385 3825385 T - ZFR2 Frame_Shift_Del p.K352Nfs*75 0.29 TCGA-DM-A1HB-01 19 38876619 38876619 C T GGN Missense_Mutation p.R428H 0.40 deleterious_low_confidence(0.04) unknown(0) TCGA-DM-A1HB-01 19 38995692 38995692 T C RYR1 Missense_Mutation p.Y2761H 0.33 possibly_damaging(0.811) TCGA-DM-A1HB-01 19 39106866 39106866 A G MAP4K1 Silent p.C94C 0.36 TCGA-DM-A1HB-01 19 39306970 39306970 C T ECH1 Missense_Mutation p.A229T 0.35 deleterious(0.01) probably_damaging(0.943) TCGA-DM-A1HB-01 19 39663913 39663913 C - PAK4 Frame_Shift_Del p.Q189Sfs*180 0.37 TCGA-DM-A1HB-01 19 40197995 40197995 G A LGALS14 Silent p.E119E 0.39 TCGA-DM-A1HB-01 19 40316611 40316612 - G DYRK1B Frame_Shift_Ins p.Q545Pfs*30 0.24 TCGA-DM-A1HB-01 19 40538318 40538318 C T ZNF780B 3'UTR 0.38 TCGA-DM-A1HB-01 19 42753294 42753294 A T ERF Missense_Mutation p.Y324N 0.36 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HB-01 19 42795269 42795269 G - CIC Frame_Shift_Del p.A785Pfs*139 0.23 TCGA-DM-A1HB-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.25 TCGA-DM-A1HB-01 19 4423372 4423372 C T CHAF1A Missense_Mutation p.R430W 0.26 deleterious(0) unknown(0) TCGA-DM-A1HB-01 19 44570394 44570394 T C ZNF223 Missense_Mutation p.L138P 0.36 deleterious(0.01) probably_damaging(0.954) TCGA-DM-A1HB-01 19 44570675 44570675 T C ZNF223 Missense_Mutation p.F232L 0.32 deleterious(0.05) probably_damaging(0.988) TCGA-DM-A1HB-01 19 44571011 44571011 T A ZNF223 Missense_Mutation p.Y344N 0.27 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 19 44831507 44831507 T C ZNF112 3'UTR 0.48 TCGA-DM-A1HB-01 19 44890516 44890516 A G ZNF285 3'UTR 0.28 TCGA-DM-A1HB-01 19 4504888 4504888 G A PLIN4 Silent p.D1244D 0.36 TCGA-DM-A1HB-01 19 45262880 45262880 G - BCL3 3'UTR 0.29 TCGA-DM-A1HB-01 19 45411924 45411924 C T APOE Missense_Mutation p.A124V 0.11 deleterious(0.01) possibly_damaging(0.494) TCGA-DM-A1HB-01 19 45656019 45656019 T G NKPD1 Missense_Mutation p.K559T 0.20 tolerated(0.16) benign(0.164) TCGA-DM-A1HB-01 19 46393942 46393942 G - MYPOP Frame_Shift_Del p.P380Hfs*26 0.25 TCGA-DM-A1HB-01 19 464068 464068 G T ODF3L2 Missense_Mutation p.R216S 0.44 tolerated(0.29) benign(0.216) TCGA-DM-A1HB-01 19 4653019 4653019 A - TNFAIP8L1 3'UTR 0.25 TCGA-DM-A1HB-01 19 46857022 46857022 G A PPP5C Missense_Mutation p.A47T 0.28 deleterious(0) probably_damaging(0.975) TCGA-DM-A1HB-01 19 47217314 47217314 C T PRKD2 Intron 0.34 TCGA-DM-A1HB-01 19 48024387 48024387 G - ZNF541 3'UTR 0.25 TCGA-DM-A1HB-01 19 49002946 49002946 G A LMTK3 Silent p.A489A 0.47 TCGA-DM-A1HB-01 19 49142229 49142229 G A CA11 Missense_Mutation p.P293S 0.45 tolerated(0.08) probably_damaging(0.998) TCGA-DM-A1HB-01 19 49671876 49671876 T G TRPM4 Missense_Mutation p.Y227D 0.22 tolerated(0.16) benign(0.443) TCGA-DM-A1HB-01 19 49842067 49842067 G A CD37 Silent p.A186A 0.41 TCGA-DM-A1HB-01 19 50098263 50098263 C - PRR12 Frame_Shift_Del p.P226Lfs*89 0.33 TCGA-DM-A1HB-01 19 50161562 50161562 G A SCAF1 Missense_Mutation p.R1282H 0.39 unknown(0) TCGA-DM-A1HB-01 19 5041195 5041195 A G KDM4B Missense_Mutation p.Y122C 0.35 probably_damaging(0.997) TCGA-DM-A1HB-01 19 50985483 50985483 G T EMC10 Silent p.G252G 0.29 TCGA-DM-A1HB-01 19 51128446 51128446 G A SYT3 Silent p.P560P 0.31 TCGA-DM-A1HB-01 19 51274562 51274562 C T GPR32 Silent p.C235C 0.33 TCGA-DM-A1HB-01 19 51323274 51323274 G T KLK1 Missense_Mutation p.L172I 0.40 deleterious(0.01) possibly_damaging(0.794) TCGA-DM-A1HB-01 19 51630554 51630554 G A SIGLEC9 Splice_Site p.X339_splice 0.33 TCGA-DM-A1HB-01 19 52216626 52216626 G A HAS1 3'UTR 0.27 TCGA-DM-A1HB-01 19 5244190 5244190 C T PTPRS Missense_Mutation p.R431Q 0.50 tolerated(0.12) probably_damaging(0.989) TCGA-DM-A1HB-01 19 52496951 52496951 C T ZNF615 Missense_Mutation p.E471K 0.36 tolerated(0.26) possibly_damaging(0.736) TCGA-DM-A1HB-01 19 53208425 53208425 C T ZNF611 Missense_Mutation p.G628D 0.30 tolerated(0.12) probably_damaging(1) TCGA-DM-A1HB-01 19 53270383 53270383 C T ZNF600 Missense_Mutation p.C209Y 0.21 tolerated(0.14) benign(0) TCGA-DM-A1HB-01 19 54081061 54081061 G - ZNF331 Frame_Shift_Del p.C416Lfs*36 0.21 TCGA-DM-A1HB-01 19 54378036 54378036 T C MYADM 3'UTR 0.05 TCGA-DM-A1HB-01 19 54418633 54418633 G A CACNG7 Missense_Mutation p.A100T 0.28 deleterious(0) possibly_damaging(0.7) TCGA-DM-A1HB-01 19 54627895 54627895 A C PRPF31 Missense_Mutation p.T239P 0.35 deleterious(0.01) probably_damaging(0.952) TCGA-DM-A1HB-01 19 54653334 54653334 C T CNOT3 Silent p.G482G 0.27 TCGA-DM-A1HB-01 19 55220641 55220641 G A AC098784.2 3'Flank 0.41 TCGA-DM-A1HB-01 19 55417532 55417532 G A NCR1 5'UTR 0.42 TCGA-DM-A1HB-01 19 55451259 55451259 G T NLRP7 Missense_Mutation p.Q310K 0.36 tolerated(0.11) benign(0.05) TCGA-DM-A1HB-01 19 55815036 55815036 C - BRSK1 Frame_Shift_Del p.R379Gfs*9 0.32 TCGA-DM-A1HB-01 19 56113632 56113632 C T ZNF524 Missense_Mutation p.R52C 0.37 deleterious(0.01) benign(0.015) TCGA-DM-A1HB-01 19 56113688 56113688 G - ZNF524 Frame_Shift_Del p.V72* 0.44 TCGA-DM-A1HB-01 19 56113872 56113872 C A ZNF524 Missense_Mutation p.H132N 0.23 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 19 56155954 56155954 C - ZNF581 Frame_Shift_Del p.C8Afs*105 0.30 TCGA-DM-A1HB-01 19 56274461 56274461 G A RFPL4A Missense_Mutation p.D262N 0.19 tolerated(0.29) benign(0.048) TCGA-DM-A1HB-01 19 56934609 56934609 A - ZNF583 Frame_Shift_Del p.K196Nfs*5 0.33 TCGA-DM-A1HB-01 19 56952961 56952961 T C ZNF667 Missense_Mutation p.E468G 0.35 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 19 5714217 5714217 G A LONP1 Silent p.G165G 0.36 TCGA-DM-A1HB-01 19 57642702 57642702 A G USP29 Missense_Mutation p.I887V 0.23 tolerated(0.05) benign(0.002) TCGA-DM-A1HB-01 19 58058212 58058212 A - ZNF550 3'UTR 0.35 TCGA-DM-A1HB-01 19 58132123 58132123 C A ZNF134 Silent p.A212A 0.42 TCGA-DM-A1HB-01 19 58197979 58197979 C A ZNF551 Silent p.V112V 0.33 TCGA-DM-A1HB-01 19 58214149 58214149 A T ZNF154 Missense_Mutation p.H56Q 0.31 tolerated(0.73) benign(0) TCGA-DM-A1HB-01 19 58352506 58352506 C T ZNF587B Missense_Mutation p.A155V 0.31 deleterious(0.04) benign(0.052) TCGA-DM-A1HB-01 19 58805762 58805762 A G ZNF8 Silent p.R196R 0.38 TCGA-DM-A1HB-01 19 58879382 58879382 C T ZNF837 Missense_Mutation p.A440T 0.35 tolerated(0.29) benign(0.046) TCGA-DM-A1HB-01 19 59082780 59082780 G A MZF1 5'UTR 0.31 TCGA-DM-A1HB-01 19 6040245 6040245 C G RFX2 Missense_Mutation p.A90P 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-DM-A1HB-01 19 6719291 6719291 T - C3 Frame_Shift_Del p.K66Nfs*2 0.23 TCGA-DM-A1HB-01 19 6752646 6752646 G A SH2D3A Silent p.R563R 0.41 TCGA-DM-A1HB-01 19 7565732 7565732 G A C19orf45 Silent p.P8P 0.48 TCGA-DM-A1HB-01 19 7735113 7735113 G A RETN Missense_Mutation p.V69I 0.41 deleterious(0.02) benign(0.22) TCGA-DM-A1HB-01 19 7794926 7794926 G A CLEC4G Silent p.I202I 0.20 TCGA-DM-A1HB-01 19 7806378 7806378 A - CD209 3'UTR 0.56 TCGA-DM-A1HB-01 19 7976401 7976402 - C MAP2K7 Frame_Shift_Ins p.L342Afs*22 0.15 TCGA-DM-A1HB-01 19 7987519 7987519 C - SNAPC2 Frame_Shift_Del p.P294Qfs*11 0.26 TCGA-DM-A1HB-01 19 8130843 8130843 C - FBN3 Frame_Shift_Del p.G2797Afs*4 0.26 TCGA-DM-A1HB-01 19 8188389 8188389 G A FBN3 Missense_Mutation p.A1014V 0.35 tolerated(0.1) benign(0.015) TCGA-DM-A1HB-01 19 9076212 9076212 G T MUC16 Nonsense_Mutation p.S3745* 0.42 TCGA-DM-A1HB-01 19 9084194 9084194 C T MUC16 Missense_Mutation p.A2541T 0.29 unknown(0) TCGA-DM-A1HB-01 19 9084290 9084290 C A MUC16 Missense_Mutation p.G2509C 0.34 unknown(0) TCGA-DM-A1HB-01 19 9213750 9213750 G A OR7G2 Missense_Mutation p.T78I 0.42 deleterious(0.02) benign(0.444) TCGA-DM-A1HB-01 19 9362674 9362674 C A OR7E24 Missense_Mutation p.L319M 0.42 tolerated(0.17) benign(0.049) TCGA-DM-A1HB-01 1 100183028 100183028 C A FRRS1 Missense_Mutation p.A392S 0.32 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 1 100696372 100696372 A G DBT Missense_Mutation p.V117A 0.33 tolerated(0.05) benign(0.272) TCGA-DM-A1HB-01 1 100933562 100933562 T C CDC14A Missense_Mutation p.Y297H 0.36 deleterious(0.01) probably_damaging(0.922) TCGA-DM-A1HB-01 1 101456023 101456023 G T DPH5 Missense_Mutation p.L267I 0.33 tolerated(0.14) possibly_damaging(0.831) TCGA-DM-A1HB-01 1 102462525 102462525 A G OLFM3 5'UTR 0.43 TCGA-DM-A1HB-01 1 10318687 10318687 T C KIF1B Missense_Mutation p.M107T 0.34 deleterious(0) probably_damaging(0.99) TCGA-DM-A1HB-01 1 103364506 103364506 T C COL11A1 Silent p.K1377K 0.32 TCGA-DM-A1HB-01 1 107691333 107691333 G A NTNG1 Missense_Mutation p.E40K 0.36 deleterious(0.05) benign(0.243) TCGA-DM-A1HB-01 1 108926123 108926123 G A NBPF6 Intron 0.27 TCGA-DM-A1HB-01 1 110022086 110022091 CCAGGA - SYPL2 In_Frame_Del p.D253_Q254del 0.22 TCGA-DM-A1HB-01 1 110302389 110302389 C T EPS8L3 Missense_Mutation p.E56K 0.33 tolerated(0.15) possibly_damaging(0.642) TCGA-DM-A1HB-01 1 110754093 110754093 C T KCNC4 5'Flank 0.31 TCGA-DM-A1HB-01 1 11087449 11087449 A - MASP2 Frame_Shift_Del p.F518Lfs*16 0.10 TCGA-DM-A1HB-01 1 1115155 1115155 C T TTLL10 Intron 0.24 TCGA-DM-A1HB-01 1 11186700 11186700 G A MTOR Missense_Mutation p.P2169S 0.43 deleterious(0) probably_damaging(0.994) TCGA-DM-A1HB-01 1 11190718 11190718 G A MTOR Silent p.N1827N 0.37 TCGA-DM-A1HB-01 1 112298349 112298349 C A DDX20 5'UTR 0.31 TCGA-DM-A1HB-01 1 11249610 11249610 A G ANGPTL7 5'UTR 0.44 TCGA-DM-A1HB-01 1 112998887 112998887 A G CTTNBP2NL Missense_Mutation p.N258S 0.39 tolerated(0.6) benign(0.006) TCGA-DM-A1HB-01 1 116383055 116383055 T A NHLH2 5'UTR 0.40 TCGA-DM-A1HB-01 1 11810184 11810184 G A AGTRAP Missense_Mutation p.A139T 0.48 tolerated(0.43) benign(0.003) TCGA-DM-A1HB-01 1 11918388 11918388 G A NPPB Missense_Mutation p.R91C 0.29 tolerated(0.18) possibly_damaging(0.844) TCGA-DM-A1HB-01 1 119427790 119427790 G T TBX15 Silent p.G352G 0.38 TCGA-DM-A1HB-01 1 120458435 120458436 - G NOTCH2 Frame_Shift_Ins p.I2304Hfs*9 0.28 TCGA-DM-A1HB-01 1 12073252 12073252 A - MFN2 3'UTR 0.67 TCGA-DM-A1HB-01 1 12414211 12414211 T C VPS13D Silent p.N3204N 0.39 TCGA-DM-A1HB-01 1 12569143 12569143 C T VPS13D 3'UTR 0.28 TCGA-DM-A1HB-01 1 12835012 12835012 T C PRAMEF12 Translation_Start_Site p.M1? 0.44 deleterious(0) possibly_damaging(0.774) TCGA-DM-A1HB-01 1 144994789 144994789 T C PDE4DIP 5'UTR 0.07 TCGA-DM-A1HB-01 1 145075752 145075752 C T PDE4DIP Silent p.T37T 0.13 TCGA-DM-A1HB-01 1 145301731 145301731 T G NBPF10 Missense_Mutation p.C334G 0.12 possibly_damaging(0.677) TCGA-DM-A1HB-01 1 145474569 145474569 T C ANKRD34A Missense_Mutation p.L414P 0.27 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HB-01 1 145498816 145498816 T - LIX1L 3'UTR 0.30 TCGA-DM-A1HB-01 1 145561403 145561403 C A ANKRD35 Missense_Mutation p.P364H 0.48 tolerated(0.29) benign(0.094) TCGA-DM-A1HB-01 1 145650482 145650483 - T RNF115 Frame_Shift_Ins p.L56Ffs*33 0.28 TCGA-DM-A1HB-01 1 147380342 147380342 C - GJA8 Frame_Shift_Del p.P88Rfs*3 0.26 TCGA-DM-A1HB-01 1 150788736 150788736 T C ARNT Missense_Mutation p.Q650R 0.30 deleterious_low_confidence(0.04) benign(0.01) TCGA-DM-A1HB-01 1 151262329 151262329 C A ZNF687 Missense_Mutation p.P937H 0.33 tolerated(0.07) possibly_damaging(0.503) TCGA-DM-A1HB-01 1 151547406 151547406 C T TUFT1 Missense_Mutation p.A248V 0.38 tolerated(0.29) benign(0.013) TCGA-DM-A1HB-01 1 151787153 151787153 A G RORC Missense_Mutation p.V277A 0.41 deleterious(0) probably_damaging(0.982) TCGA-DM-A1HB-01 1 153043040 153043040 G T SPRR2B 3'UTR 0.36 TCGA-DM-A1HB-01 1 153923904 153923904 G A CRTC2 Silent p.G412G 0.38 TCGA-DM-A1HB-01 1 154144503 154144503 A G TPM3 Intron 0.39 TCGA-DM-A1HB-01 1 154437785 154437785 A C IL6R Missense_Mutation p.N446H 0.36 deleterious(0.01) benign(0.235) TCGA-DM-A1HB-01 1 154523912 154523912 C A UBE2Q1 Silent p.L377L 0.05 TCGA-DM-A1HB-01 1 155149496 155149496 G A TRIM46 Missense_Mutation p.R253H 0.36 tolerated(0.11) probably_damaging(0.984) TCGA-DM-A1HB-01 1 155221328 155221330 AAG - FAM189B In_Frame_Del p.S286del 0.47 TCGA-DM-A1HB-01 1 156127898 156127898 G A SEMA4A Missense_Mutation p.C113Y 0.40 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 1 156314405 156314405 C T TSACC Silent p.L23L 0.46 TCGA-DM-A1HB-01 1 156703938 156703938 C T RRNAD1 Silent p.H258H 0.08 TCGA-DM-A1HB-01 1 156715089 156715089 G A HDGF Missense_Mutation p.T71M 0.29 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 1 158815482 158815482 G A MNDA Missense_Mutation p.E226K 0.37 tolerated(0.07) benign(0.292) TCGA-DM-A1HB-01 1 159283966 159283966 T A OR10J3 Missense_Mutation p.T162S 0.33 tolerated(0.55) benign(0.088) TCGA-DM-A1HB-01 1 159751095 159751095 C G DUSP23 Missense_Mutation p.P69A 0.16 deleterious(0.01) possibly_damaging(0.876) TCGA-DM-A1HB-01 1 159856411 159856411 T - CCDC19 Frame_Shift_Del p.E220Nfs*12 0.25 TCGA-DM-A1HB-01 1 160054533 160054533 G A KCNJ9 Missense_Mutation p.R238H 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-DM-A1HB-01 1 160141202 160141202 A G ATP1A4 Silent p.E551E 0.36 TCGA-DM-A1HB-01 1 161018188 161018188 C T ARHGAP30 Missense_Mutation p.A875T 0.36 tolerated_low_confidence(0.48) benign(0.006) TCGA-DM-A1HB-01 1 161068706 161068706 C - KLHDC9 Frame_Shift_Del p.A130Pfs*37 0.42 TCGA-DM-A1HB-01 1 161641285 161641285 C T FCGR2B Silent p.S79S 0.24 TCGA-DM-A1HB-01 1 16199319 16199319 G A SPEN Missense_Mutation p.R31H 0.40 probably_damaging(0.999) TCGA-DM-A1HB-01 1 16255336 16255336 A G SPEN Missense_Mutation p.I867M 0.36 benign(0.008) TCGA-DM-A1HB-01 1 165737494 165737494 A T TMCO1 Missense_Mutation p.V79D 0.36 deleterious(0) probably_damaging(0.956) TCGA-DM-A1HB-01 1 167865906 167865906 G - ADCY10 Frame_Shift_Del p.N223Ifs*27 0.25 TCGA-DM-A1HB-01 1 169446830 169446830 T C SLC19A2 Missense_Mutation p.I124V 0.43 tolerated(0.07) benign(0.007) TCGA-DM-A1HB-01 1 16946283 16946283 G A RP5-1182A14.5 3'Flank 0.08 TCGA-DM-A1HB-01 1 171560806 171560806 C T PRRC2C Silent p.G2758G 0.43 TCGA-DM-A1HB-01 1 172579250 172579250 C T SUCO Nonsense_Mutation p.R1206* 0.36 TCGA-DM-A1HB-01 1 175335068 175335068 C T TNR Missense_Mutation p.V754I 0.34 tolerated(1) benign(0.021) TCGA-DM-A1HB-01 1 176926895 176926895 G A ASTN1 Silent p.R602R 0.40 TCGA-DM-A1HB-01 1 178489950 178489950 G A TEX35 Missense_Mutation p.A162T 0.30 tolerated_low_confidence(0.14) probably_damaging(0.981) TCGA-DM-A1HB-01 1 182025756 182025756 C T ZNF648 Missense_Mutation p.V464M 0.38 deleterious(0.01) possibly_damaging(0.861) TCGA-DM-A1HB-01 1 184006259 184006259 A G COLGALT2 Missense_Mutation p.L78P 0.31 deleterious(0) probably_damaging(0.981) TCGA-DM-A1HB-01 1 185985248 185985248 A G HMCN1 Missense_Mutation p.I1690V 0.40 benign(0.064) TCGA-DM-A1HB-01 1 186014936 186014936 G A HMCN1 Missense_Mutation p.G2141S 0.43 probably_damaging(0.999) TCGA-DM-A1HB-01 1 18809359 18809359 G A KLHDC7A Silent p.T628T 0.41 TCGA-DM-A1HB-01 1 19018293 19018293 T C PAX7 Missense_Mutation p.L211P 0.37 deleterious(0) possibly_damaging(0.775) TCGA-DM-A1HB-01 1 19422064 19422064 T C UBR4 Missense_Mutation p.N4534S 0.34 probably_damaging(0.973) TCGA-DM-A1HB-01 1 19447841 19447842 CA - UBR4 Frame_Shift_Del p.C3328Rfs*40 0.27 TCGA-DM-A1HB-01 1 196964929 196964929 T A CFHR5 Missense_Mutation p.N230K 0.31 tolerated(0.08) benign(0.039) TCGA-DM-A1HB-01 1 197073341 197073342 - T ASPM Frame_Shift_Ins p.N1680Kfs*11 0.25 TCGA-DM-A1HB-01 1 197886566 197886566 C A LHX9 5'UTR 0.36 TCGA-DM-A1HB-01 1 198668708 198668708 A C PTPRC Missense_Mutation p.Q105P 0.36 tolerated(0.34) benign(0.001) TCGA-DM-A1HB-01 1 200973896 200973896 G T KIF21B Missense_Mutation p.L300M 0.46 deleterious(0) possibly_damaging(0.483) TCGA-DM-A1HB-01 1 201289493 201289493 G A PKP1 Missense_Mutation p.S465N 0.38 tolerated(1) benign(0.002) TCGA-DM-A1HB-01 1 203148508 203148508 C T CHI3L1 3'UTR 0.30 TCGA-DM-A1HB-01 1 204971813 204971813 C T NFASC Missense_Mutation p.R1076W 0.36 tolerated(0.1) unknown(0) TCGA-DM-A1HB-01 1 209933542 209933543 AG - TRAF3IP3 Frame_Shift_Del p.E55Afs*67 0.28 TCGA-DM-A1HB-01 1 21050714 21050714 G A SH2D5 Missense_Mutation p.R221C 0.25 tolerated(0.18) probably_damaging(0.999) TCGA-DM-A1HB-01 1 211093171 211093171 C A KCNH1 Missense_Mutation p.D425Y 0.37 deleterious(0.02) possibly_damaging(0.68) TCGA-DM-A1HB-01 1 212911788 212911788 A G NSL1 Missense_Mutation p.Y270H 0.38 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 1 213031994 213031994 C A FLVCR1 Missense_Mutation p.P67H 0.27 deleterious_low_confidence(0.03) benign(0.302) TCGA-DM-A1HB-01 1 215932069 215932069 T - USH2A Frame_Shift_Del p.T3753Lfs*31 0.25 TCGA-DM-A1HB-01 1 221053499 221053499 G A HLX Silent p.A100A 0.33 TCGA-DM-A1HB-01 1 22156450 22156450 T C HSPG2 Intron 0.35 TCGA-DM-A1HB-01 1 22179558 22179558 C T HSPG2 Missense_Mutation p.G2149S 0.35 benign(0.033) TCGA-DM-A1HB-01 1 22188594 22188594 G A HSPG2 Silent p.N1585N 0.54 TCGA-DM-A1HB-01 1 22329497 22329497 C A CELA3A Silent p.A15A 0.33 TCGA-DM-A1HB-01 1 226555192 226555192 T - PARP1 Frame_Shift_Del p.T799Lfs*41 0.26 TCGA-DM-A1HB-01 1 227174236 227174237 AG - ADCK3 Frame_Shift_Del p.S582Hfs*147 0.25 TCGA-DM-A1HB-01 1 227947151 227947151 C - SNAP47 Frame_Shift_Del p.A365Qfs*14 0.19 TCGA-DM-A1HB-01 1 228464234 228464234 C T OBSCN Missense_Mutation p.H2477Y 0.44 probably_damaging(0.998) TCGA-DM-A1HB-01 1 236740195 236740195 G T HEATR1 Missense_Mutation p.A937D 0.27 deleterious(0) probably_damaging(0.973) TCGA-DM-A1HB-01 1 240255443 240255443 G A FMN2 Missense_Mutation p.A12T 0.45 unknown(0) TCGA-DM-A1HB-01 1 240371058 240371058 C T FMN2 Silent p.P982P 0.31 TCGA-DM-A1HB-01 1 240656552 240656552 G A GREM2 Missense_Mutation p.T75M 0.43 deleterious(0) probably_damaging(0.996) TCGA-DM-A1HB-01 1 2435301 2435301 C T PLCH2 3'UTR 0.27 TCGA-DM-A1HB-01 1 247065907 247065907 G A AHCTF1 Missense_Mutation p.T355M 0.39 deleterious(0.01) probably_damaging(0.921) TCGA-DM-A1HB-01 1 247162734 247162734 T C ZNF695 Missense_Mutation p.M59V 0.33 tolerated(1) benign(0.038) TCGA-DM-A1HB-01 1 247463849 247463849 C T ZNF496 Missense_Mutation p.R579H 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-DM-A1HB-01 1 247655035 247655036 - G OR2W5 RNA 0.31 TCGA-DM-A1HB-01 1 248059356 248059356 C A OR2W3 Silent p.S156S 0.37 TCGA-DM-A1HB-01 1 248525492 248525492 C T OR2T4 Missense_Mutation p.R204W 0.37 deleterious(0.01) benign(0.082) TCGA-DM-A1HB-01 1 248845158 248845158 A G OR14I1 Missense_Mutation p.C150R 0.35 deleterious(0) possibly_damaging(0.53) TCGA-DM-A1HB-01 1 2526275 2526275 C T MMEL1 Missense_Mutation p.A548T 0.39 tolerated(0.17) possibly_damaging(0.866) TCGA-DM-A1HB-01 1 26365688 26365688 A G SLC30A2 Missense_Mutation p.M361T 0.40 tolerated(0.16) probably_damaging(0.999) TCGA-DM-A1HB-01 1 26488018 26488018 C T FAM110D Missense_Mutation p.P79L 0.26 tolerated(1) benign(0.011) TCGA-DM-A1HB-01 1 26507207 26507207 G A CNKSR1 Missense_Mutation p.S71N 0.41 tolerated(0.41) possibly_damaging(0.606) TCGA-DM-A1HB-01 1 26737273 26737273 G A LIN28A 5'UTR 0.27 TCGA-DM-A1HB-01 1 26898744 26898744 T C RPS6KA1 Missense_Mutation p.L645P 0.33 deleterious(0) probably_damaging(0.966) TCGA-DM-A1HB-01 1 27100848 27100848 A G ARID1A Missense_Mutation p.Y1377C 0.40 unknown(0) TCGA-DM-A1HB-01 1 28800067 28800067 T C PHACTR4 Silent p.A285A 0.36 TCGA-DM-A1HB-01 1 32096405 32096405 T C PEF1 Missense_Mutation p.T222A 0.36 tolerated(0.39) benign(0.366) TCGA-DM-A1HB-01 1 32193008 32193008 T C BAI2 3'UTR 0.42 TCGA-DM-A1HB-01 1 33772548 33772548 G A A3GALT2 Missense_Mutation p.A281V 0.31 tolerated(0.12) benign(0.359) TCGA-DM-A1HB-01 1 33957280 33957280 A G ZSCAN20 Silent p.P474P 0.27 TCGA-DM-A1HB-01 1 3415360 3415360 C T MEGF6 Missense_Mutation p.C1042Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 1 3547968 3547968 C T WRAP73 Intron 0.38 TCGA-DM-A1HB-01 1 35578941 35578941 A - ZMYM1 Frame_Shift_Del p.T506Pfs*15 0.23 TCGA-DM-A1HB-01 1 35932298 35932298 T G KIAA0319L Splice_Site p.X372_splice 0.32 TCGA-DM-A1HB-01 1 36023805 36023805 A T NCDN Missense_Mutation p.D5V 0.30 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-DM-A1HB-01 1 36023821 36023821 A G NCDN Silent p.G10G 0.29 TCGA-DM-A1HB-01 1 36055563 36055563 G A TFAP2E Missense_Mutation p.R273Q 0.36 deleterious(0.02) probably_damaging(1) TCGA-DM-A1HB-01 1 36307265 36307267 GAA - AGO4 In_Frame_Del p.E698del 0.31 TCGA-DM-A1HB-01 1 36558039 36558039 C T ADPRHL2 Missense_Mutation p.R240C 0.34 tolerated(0.18) benign(0.003) TCGA-DM-A1HB-01 1 36614752 36614752 C T TRAPPC3 Intron 0.30 TCGA-DM-A1HB-01 1 37499644 37499644 G A GRIK3 Silent p.C22C 0.42 TCGA-DM-A1HB-01 1 37947355 37947355 A G ZC3H12A Missense_Mutation p.Y246C 0.30 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 1 39549861 39549861 G T MACF1 5'UTR 0.44 TCGA-DM-A1HB-01 1 40420879 40420879 T C MFSD2A 5'UTR 0.50 TCGA-DM-A1HB-01 1 40770483 40770483 C A COL9A2 Missense_Mutation p.G382C 0.33 deleterious(0) probably_damaging(0.991) TCGA-DM-A1HB-01 1 41236183 41236183 C A NFYC Intron 0.21 TCGA-DM-A1HB-01 1 41296879 41296879 G T KCNQ4 Missense_Mutation p.E472D 0.33 tolerated(0.09) benign(0.015) TCGA-DM-A1HB-01 1 44422536 44422536 C T IPO13 Missense_Mutation p.R387W 0.25 deleterious(0) possibly_damaging(0.786) TCGA-DM-A1HB-01 1 44461665 44461665 G T CCDC24 Missense_Mutation p.G253W 0.31 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 1 45293825 45293825 T C PTCH2 Missense_Mutation p.E583G 0.22 tolerated(0.08) benign(0.04) TCGA-DM-A1HB-01 1 45977021 45977021 A G PRDX1 Missense_Mutation p.Y194H 0.31 deleterious(0) probably_damaging(0.913) TCGA-DM-A1HB-01 1 46659217 46659217 C - POMGNT1 Intron 0.30 TCGA-DM-A1HB-01 1 46685760 46685760 A G LURAP1 Silent p.R196R 0.31 TCGA-DM-A1HB-01 1 47746582 47746582 G T STIL Silent p.P516P 0.37 TCGA-DM-A1HB-01 1 49119125 49119125 T C AGBL4 Splice_Site p.X242_splice 0.25 TCGA-DM-A1HB-01 1 51767214 51767214 C A TTC39A Intron 0.35 TCGA-DM-A1HB-01 1 52798561 52798561 C T ZFYVE9 Missense_Mutation p.A1187V 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-DM-A1HB-01 1 52941018 52941018 G A ZCCHC11 Missense_Mutation p.S738L 0.29 tolerated(0.09) benign(0.008) TCGA-DM-A1HB-01 1 54683979 54683979 C T MRPL37 3'UTR 0.25 TCGA-DM-A1HB-01 1 55253403 55253403 G A TTC22 Silent p.S240S 0.33 TCGA-DM-A1HB-01 1 55464998 55464998 G A BSND Missense_Mutation p.G47R 0.32 tolerated(0.08) probably_damaging(1) TCGA-DM-A1HB-01 1 63063515 63063517 AAG - ANGPTL3 In_Frame_Del p.E96del 0.30 TCGA-DM-A1HB-01 1 63070595 63070595 T - ANGPTL3 3'UTR 0.25 TCGA-DM-A1HB-01 1 6511709 6511709 G A ESPN Silent p.E654E 0.38 TCGA-DM-A1HB-01 1 65897702 65897702 T - LEPROT 3'UTR 0.29 TCGA-DM-A1HB-01 1 6605171 6605171 T - NOL9 Frame_Shift_Del p.R272Gfs*6 0.29 TCGA-DM-A1HB-01 1 68171216 68171216 T C GNG12 Missense_Mutation p.H46R 0.28 deleterious(0.03) benign(0.438) TCGA-DM-A1HB-01 1 76211507 76211507 C T ACADM Missense_Mutation p.R210C 0.35 deleterious(0) probably_damaging(0.946) TCGA-DM-A1HB-01 1 78098249 78098249 T C ZZZ3 Missense_Mutation p.H264R 0.29 tolerated(0.11) benign(0.002) TCGA-DM-A1HB-01 1 78414846 78414846 T G FUBP1 Silent p.A640A 0.30 TCGA-DM-A1HB-01 1 8555196 8555196 C T RERE Missense_Mutation p.C344Y 0.28 probably_damaging(0.961) TCGA-DM-A1HB-01 1 89325963 89325963 C A GTF2B Nonsense_Mutation p.G89* 0.32 TCGA-DM-A1HB-01 1 89613445 89613445 C T GBP7 Silent p.K390K 0.34 TCGA-DM-A1HB-01 1 89834126 89834126 A T GBP6 Nonsense_Mutation p.K6* 0.38 TCGA-DM-A1HB-01 1 91180274 91180274 C T BARHL2 Missense_Mutation p.R222H 0.40 deleterious(0.01) unknown(0) TCGA-DM-A1HB-01 1 93309383 93309383 C T FAM69A Missense_Mutation p.V282I 0.33 tolerated(1) benign(0.022) TCGA-DM-A1HB-01 1 94467467 94467467 G A ABCA4 Missense_Mutation p.R2077W 0.27 deleterious(0) probably_damaging(0.997) TCGA-DM-A1HB-01 1 9809959 9809959 T - CLSTN1 Frame_Shift_Del p.N221Tfs*5 0.18 TCGA-DM-A1HB-01 1 981573 981573 G A AGRN Missense_Mutation p.E947K 0.29 tolerated(0.09) possibly_damaging(0.635) TCGA-DM-A1HB-01 1 9910590 9910590 C T CTNNBIP1 3'UTR 0.43 TCGA-DM-A1HB-01 20 10630906 10630906 G A JAG1 Missense_Mutation p.T408M 0.37 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 20 1293260 1293260 G A SDCBP2 Silent p.G177G 0.11 TCGA-DM-A1HB-01 20 14307651 14307651 T C FLRT3 Missense_Mutation p.T168A 0.33 deleterious(0.04) benign(0.008) TCGA-DM-A1HB-01 20 17434421 17434421 C T PCSK2 Missense_Mutation p.A307V 0.23 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 20 17446188 17446188 C T PCSK2 Nonsense_Mutation p.Q474* 0.40 TCGA-DM-A1HB-01 20 18297139 18297139 G A ZNF133 Silent p.K547K 0.31 TCGA-DM-A1HB-01 20 18470289 18470289 T C RBBP9 3'UTR 0.17 TCGA-DM-A1HB-01 20 20553666 20553666 C - RALGAPA2 Frame_Shift_Del p.S919Afs*24 0.23 TCGA-DM-A1HB-01 20 21493013 21493013 C - NKX2-2 Frame_Shift_Del p.D124Tfs*60 0.33 TCGA-DM-A1HB-01 20 23377723 23377723 T - NAPB Frame_Shift_Del p.K94Rfs*11 0.25 TCGA-DM-A1HB-01 20 2637439 2637439 C T NOP56 Silent p.F393F 0.39 TCGA-DM-A1HB-01 20 278966 278966 G T ZCCHC3 Missense_Mutation p.G247W 0.33 deleterious(0.02) probably_damaging(0.934) TCGA-DM-A1HB-01 20 2842729 2842729 T C VPS16 Missense_Mutation p.S342P 0.29 deleterious(0) probably_damaging(0.996) TCGA-DM-A1HB-01 20 30436339 30436339 C T FOXS1 5'Flank 0.34 TCGA-DM-A1HB-01 20 31890184 31890184 G A BPIFB1 Missense_Mutation p.R316Q 0.40 tolerated(0.66) benign(0.005) TCGA-DM-A1HB-01 20 32246354 32246354 G A NECAB3 Silent p.S333S 0.30 TCGA-DM-A1HB-01 20 32308127 32308127 G T PXMP4 5'Flank 0.50 TCGA-DM-A1HB-01 20 33762598 33762598 C T PROCR Missense_Mutation p.T55M 0.33 deleterious(0) probably_damaging(0.994) TCGA-DM-A1HB-01 20 34021901 34021901 G A GDF5 Missense_Mutation p.R438C 0.37 deleterious(0) probably_damaging(0.987) TCGA-DM-A1HB-01 20 3674983 3674984 - T SIGLEC1 Frame_Shift_Ins p.N1048Qfs*15 0.28 TCGA-DM-A1HB-01 20 37179739 37179743 TTCCT CTCCCA RALGAPB Frame_Shift_Ins p.V1012Afs*5 0.31 TCGA-DM-A1HB-01 20 37580739 37580739 A T FAM83D Missense_Mutation p.D475V 0.29 tolerated(0.05) benign(0.037) TCGA-DM-A1HB-01 20 39798114 39798114 C - PLCG1 Frame_Shift_Del p.L868* 0.27 TCGA-DM-A1HB-01 20 39974625 39974625 G A LPIN3 Missense_Mutation p.R61Q 0.34 deleterious(0) possibly_damaging(0.864) TCGA-DM-A1HB-01 20 42164822 42164822 G A L3MBTL1 Missense_Mutation p.A649T 0.25 deleterious(0.04) possibly_damaging(0.874) TCGA-DM-A1HB-01 20 44445366 44445366 A G UBE2C Missense_Mutation p.Q167R 0.30 tolerated(0.54) benign(0.002) TCGA-DM-A1HB-01 20 44507163 44507163 T C ZSWIM3 Missense_Mutation p.S656P 0.33 tolerated(0.22) benign(0.002) TCGA-DM-A1HB-01 20 44513001 44513001 T C ZSWIM1 3'UTR 0.29 TCGA-DM-A1HB-01 20 45867628 45867628 T C ZMYND8 Intron 0.33 TCGA-DM-A1HB-01 20 47701830 47701830 G A CSE1L Missense_Mutation p.A544T 0.37 tolerated(0.58) benign(0.003) TCGA-DM-A1HB-01 20 48252783 48252783 A - B4GALT5 3'UTR 0.31 TCGA-DM-A1HB-01 20 56090861 56090861 G T CTCFL Silent p.S363S 0.28 TCGA-DM-A1HB-01 20 56735727 56735727 C - C20orf85 Frame_Shift_Del p.P90Qfs*19 0.24 TCGA-DM-A1HB-01 20 57594499 57594499 T C TUBB1 5'UTR 0.39 TCGA-DM-A1HB-01 20 5904190 5904190 T C CHGB Missense_Mutation p.L467P 0.47 tolerated(0.07) possibly_damaging(0.575) TCGA-DM-A1HB-01 20 590648 590648 G A TCF15 Silent p.N78N 0.47 TCGA-DM-A1HB-01 20 62421706 62421706 C T ZBTB46 Silent p.S135S 0.37 TCGA-DM-A1HB-01 21 26978813 26978813 A G MRPL39 Silent p.G76G 0.33 TCGA-DM-A1HB-01 21 28338201 28338201 G A ADAMTS5 Silent p.R170R 0.48 TCGA-DM-A1HB-01 21 30714989 30714989 C A BACH1 Silent p.P682P 0.46 TCGA-DM-A1HB-01 21 35169850 35169850 G A ITSN1 Missense_Mutation p.R707Q 0.32 tolerated(0.34) benign(0.011) TCGA-DM-A1HB-01 21 36206865 36206865 G T RUNX1 Missense_Mutation p.P216H 0.22 deleterious(0.02) possibly_damaging(0.885) TCGA-DM-A1HB-01 21 38497024 38497024 T C TTC3 Silent p.G405G 0.37 TCGA-DM-A1HB-01 21 43259735 43259735 T C PRDM15 Missense_Mutation p.T656A 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-DM-A1HB-01 21 43259770 43259770 T C PRDM15 Missense_Mutation p.E644G 0.05 deleterious_low_confidence(0) benign(0.013) TCGA-DM-A1HB-01 21 43531041 43531041 C T UMODL1 Missense_Mutation p.T570M 0.38 tolerated(0.14) probably_damaging(0.929) TCGA-DM-A1HB-01 21 43824115 43824115 A G UBASH3A Missense_Mutation p.S21G 0.33 tolerated(0.15) benign(0.027) TCGA-DM-A1HB-01 21 44513342 44513342 C T U2AF1 Missense_Mutation p.R198Q 0.39 tolerated(0.23) unknown(0) TCGA-DM-A1HB-01 21 45535249 45535249 T C PWP2 Missense_Mutation p.V192A 0.33 deleterious(0.01) probably_damaging(0.913) TCGA-DM-A1HB-01 21 45746602 45746602 C T PFKL Missense_Mutation p.R734C 0.46 deleterious(0) possibly_damaging(0.905) TCGA-DM-A1HB-01 21 45789225 45789225 C T TRPM2 Missense_Mutation p.T257M 0.35 tolerated(0.25) benign(0.004) TCGA-DM-A1HB-01 21 45795830 45795830 G A TRPM2 Missense_Mutation p.G296R 0.28 deleterious(0) probably_damaging(0.994) TCGA-DM-A1HB-01 21 46888325 46888325 C A COL18A1 Missense_Mutation p.F272L 0.40 unknown(0) TCGA-DM-A1HB-01 21 46888672 46888672 C T COL18A1 Missense_Mutation p.A388V 0.52 unknown(0) TCGA-DM-A1HB-01 21 47402615 47402615 C T COL6A1 Silent p.Y55Y 0.30 TCGA-DM-A1HB-01 21 47571509 47571509 G A FTCD Missense_Mutation p.A200V 0.42 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 21 47663439 47663439 C T MCM3AP Missense_Mutation p.A1746T 0.29 tolerated(0.26) benign(0.008) TCGA-DM-A1HB-01 22 16279260 16279260 T - POTEH Frame_Shift_Del p.K321Nfs*5 0.09 TCGA-DM-A1HB-01 22 17444668 17444668 G A GAB4 Missense_Mutation p.P510S 0.29 tolerated(0.11) benign(0.054) TCGA-DM-A1HB-01 22 19799930 19799930 C A GNB1L Nonsense_Mutation p.E99* 0.05 TCGA-DM-A1HB-01 22 19968691 19968691 A G ARVCF Intron 0.26 TCGA-DM-A1HB-01 22 20760749 20760749 G A ZNF74 Missense_Mutation p.E476K 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-DM-A1HB-01 22 20843305 20843305 C T KLHL22 Missense_Mutation p.R65H 0.25 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 22 22055308 22055308 C T YPEL1 3'UTR 0.44 TCGA-DM-A1HB-01 22 22550659 22550659 T C IGLV6-57 Silent p.S112S 0.34 TCGA-DM-A1HB-01 22 22682148 22682148 A G IGLV1-50 Silent p.K110K 0.47 TCGA-DM-A1HB-01 22 22782333 22782333 G A IGLV5-37 Missense_Mutation p.A111T 0.27 deleterious(0.01) possibly_damaging(0.819) TCGA-DM-A1HB-01 22 24177201 24177201 A G DERL3 Intron 0.57 TCGA-DM-A1HB-01 22 24237624 24237624 G T AP000350.4 Missense_Mutation p.H61N 0.28 unknown(0) TCGA-DM-A1HB-01 22 26860620 26860620 C T HPS4 Missense_Mutation p.G326R 0.30 tolerated(0.08) benign(0.271) TCGA-DM-A1HB-01 22 28196224 28196224 C T MN1 Missense_Mutation p.G103E 0.29 possibly_damaging(0.824) TCGA-DM-A1HB-01 22 29627121 29627121 G T EMID1 Missense_Mutation p.G193V 0.37 deleterious(0.01) benign(0.361) TCGA-DM-A1HB-01 22 30198145 30198145 T C ASCC2 Missense_Mutation p.D469G 0.26 deleterious(0) probably_damaging(0.986) TCGA-DM-A1HB-01 22 30409396 30409396 G A MTMR3 Missense_Mutation p.A457T 0.35 deleterious(0) probably_damaging(0.996) TCGA-DM-A1HB-01 22 31032770 31032770 A G SLC35E4 Silent p.L111L 0.37 TCGA-DM-A1HB-01 22 32889242 32889242 G A FBXO7 Missense_Mutation p.R373K 0.30 tolerated(0.07) probably_damaging(0.968) TCGA-DM-A1HB-01 22 32924883 32924883 G A SYN3 Missense_Mutation p.A403V 0.29 tolerated(0.45) unknown(0) TCGA-DM-A1HB-01 22 37966374 37966374 C T LGALS2 Missense_Mutation p.D99N 0.29 tolerated(0.08) possibly_damaging(0.833) TCGA-DM-A1HB-01 22 38130884 38130885 - C TRIOBP Frame_Shift_Ins p.E1517* 0.24 TCGA-DM-A1HB-01 22 39884158 39884158 T C MGAT3 Missense_Mutation p.V269A 0.50 deleterious(0) possibly_damaging(0.566) TCGA-DM-A1HB-01 22 40030722 40030722 T C CACNA1I Missense_Mutation p.F245L 0.38 tolerated(0.06) benign(0.414) TCGA-DM-A1HB-01 22 40697238 40697239 - T TNRC6B Frame_Shift_Ins p.G1342Wfs*56 0.22 TCGA-DM-A1HB-01 22 41753299 41753299 C T ZC3H7B Missense_Mutation p.R934C 0.31 deleterious(0.01) possibly_damaging(0.724) TCGA-DM-A1HB-01 22 41753328 41753328 C T ZC3H7B Silent p.D943D 0.30 TCGA-DM-A1HB-01 22 42383207 42383207 C A SEPT3 Intron 0.32 TCGA-DM-A1HB-01 22 42970810 42970810 G A SERHL2 3'Flank 0.44 TCGA-DM-A1HB-01 22 43218297 43218297 A G ARFGAP3 Missense_Mutation p.V264A 0.36 tolerated(0.67) benign(0) TCGA-DM-A1HB-01 22 44527420 44527420 G T PARVB Missense_Mutation p.G177W 0.29 deleterious(0.02) possibly_damaging(0.637) TCGA-DM-A1HB-01 22 50303574 50303574 C T ALG12 Missense_Mutation p.R211H 0.25 possibly_damaging(0.671) TCGA-DM-A1HB-01 22 50901773 50901773 C T SBF1 Missense_Mutation p.R613H 0.36 tolerated(0.13) probably_damaging(0.999) TCGA-DM-A1HB-01 2 103343416 103343416 T C MFSD9 Silent p.V105V 0.42 TCGA-DM-A1HB-01 2 10933290 10933290 T C PDIA6 Missense_Mutation p.S129G 0.29 tolerated(0.25) benign(0) TCGA-DM-A1HB-01 2 110036027 110036027 G A SH3RF3 Silent p.T444T 0.33 TCGA-DM-A1HB-01 2 11052638 11052639 - G KCNF1 Frame_Shift_Ins p.V32Rfs*15 0.32 TCGA-DM-A1HB-01 2 11053476 11053476 G A KCNF1 Silent p.S308S 0.39 TCGA-DM-A1HB-01 2 111144760 111144760 G A LINC01106 5'Flank 0.22 TCGA-DM-A1HB-01 2 112942907 112942907 C T FBLN7 Missense_Mutation p.T313M 0.40 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 2 113480073 113480073 A G NT5DC4 Splice_Site p.X100_splice 0.53 TCGA-DM-A1HB-01 2 11348444 11348444 A G ROCK2 Missense_Mutation p.L778P 0.36 deleterious(0) probably_damaging(0.971) TCGA-DM-A1HB-01 2 116534869 116534869 A - DPP10 Frame_Shift_Del p.I442Ffs*4 0.26 TCGA-DM-A1HB-01 2 125672797 125672797 A G CNTNAP5 3'UTR 0.34 TCGA-DM-A1HB-01 2 125672808 125672808 C T CNTNAP5 3'UTR 0.36 TCGA-DM-A1HB-01 2 128461231 128461231 T C WDR33 3'UTR 0.41 TCGA-DM-A1HB-01 2 12880608 12880608 G - TRIB2 Frame_Shift_Del p.V242* 0.22 TCGA-DM-A1HB-01 2 130725780 130725780 C A RAB6C-AS1 RNA 0.47 TCGA-DM-A1HB-01 2 130953943 130953943 C A TUBA3E Missense_Mutation p.R2L 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DM-A1HB-01 2 136530036 136530036 T C UBXN4 Missense_Mutation p.V290A 0.33 tolerated(0.76) benign(0.001) TCGA-DM-A1HB-01 2 136602153 136602153 T - MCM6 Frame_Shift_Del p.R771Efs*3 0.24 TCGA-DM-A1HB-01 2 141243037 141243038 - T LRP1B Frame_Shift_Ins p.N3100Kfs*6 0.16 TCGA-DM-A1HB-01 2 142567960 142567961 - A LRP1B Frame_Shift_Ins p.L31Ffs*3 0.24 TCGA-DM-A1HB-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.73 TCGA-DM-A1HB-01 2 152387559 152387559 G A NEB Silent p.H7193H 0.38 TCGA-DM-A1HB-01 2 152732945 152732945 G A CACNB4 Silent p.H172H 0.33 TCGA-DM-A1HB-01 2 160735779 160735779 A C LY75-CD302 Silent p.P502P 0.38 TCGA-DM-A1HB-01 2 16085807 16085807 A G MYCN Missense_Mutation p.Q328R 0.29 deleterious(0) possibly_damaging(0.512) TCGA-DM-A1HB-01 2 16086274 16086274 T A MYCN 3'UTR 0.32 TCGA-DM-A1HB-01 2 160964245 160964245 T C ITGB6 Missense_Mutation p.D738G 0.37 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 2 164467610 164467610 A C FIGN Missense_Mutation p.S244R 0.27 tolerated(0.6) benign(0.044) TCGA-DM-A1HB-01 2 170031825 170031825 G A LRP2 Missense_Mutation p.P3549L 0.38 probably_damaging(0.935) TCGA-DM-A1HB-01 2 172337721 172337721 A G DCAF17 3'UTR 0.31 TCGA-DM-A1HB-01 2 178936304 178936304 A G PDE11A Silent p.I287I 0.23 TCGA-DM-A1HB-01 2 179393601 179393601 A - TTN Frame_Shift_Del p.L35626* 0.21 TCGA-DM-A1HB-01 2 179404315 179404315 G T TTN Missense_Mutation p.A32826D 0.34 TCGA-DM-A1HB-01 2 179412201 179412201 A C TTN Missense_Mutation p.S31384R 0.31 TCGA-DM-A1HB-01 2 179422178 179422178 C A TTN Missense_Mutation p.G29271C 0.31 TCGA-DM-A1HB-01 2 179432660 179432660 C T TTN Missense_Mutation p.A26067T 0.35 TCGA-DM-A1HB-01 2 179477605 179477605 G A TTN Missense_Mutation p.L16615F 0.34 TCGA-DM-A1HB-01 2 179569075 179569075 T C TTN Missense_Mutation p.M10008V 0.35 TCGA-DM-A1HB-01 2 179742793 179742793 G T CCDC141 Silent p.A599A 0.24 TCGA-DM-A1HB-01 2 182521660 182521660 G T CERKL Missense_Mutation p.A25D 0.41 deleterious_low_confidence(0.01) benign(0.107) TCGA-DM-A1HB-01 2 188361754 188361754 G A TFPI Missense_Mutation p.A58V 0.40 tolerated(0.11) benign(0.078) TCGA-DM-A1HB-01 2 190541793 190541794 - T ANKAR Frame_Shift_Ins p.S195Ffs*4 0.38 TCGA-DM-A1HB-01 2 191859866 191859866 A T STAT1 Missense_Mutation p.Y289N 0.38 deleterious(0) possibly_damaging(0.854) TCGA-DM-A1HB-01 2 192257904 192257904 A - MYO1B Frame_Shift_Del p.S730Afs*4 0.34 TCGA-DM-A1HB-01 2 197143321 197143321 G A HECW2 Silent p.S1022S 0.32 TCGA-DM-A1HB-01 2 197521396 197521396 C T CCDC150 Silent p.D72D 0.39 TCGA-DM-A1HB-01 2 197577441 197577441 A G CCDC150 Missense_Mutation p.Q615R 0.39 tolerated(0.67) benign(0.018) TCGA-DM-A1HB-01 2 198274625 198274625 G A SF3B1 Missense_Mutation p.P258L 0.38 deleterious(0) probably_damaging(0.965) TCGA-DM-A1HB-01 2 198359381 198359381 C A HSPD1 Missense_Mutation p.K202N 0.33 deleterious(0.01) possibly_damaging(0.825) TCGA-DM-A1HB-01 2 198365798 198365798 G A HSPE1-MOB4 Missense_Mutation p.A2T 0.36 deleterious_low_confidence(0) unknown(0) TCGA-DM-A1HB-01 2 203332371 203332371 A G BMPR2 Missense_Mutation p.N126S 0.31 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 2 203653713 203653713 A G ICA1L Silent p.T361T 0.37 TCGA-DM-A1HB-01 2 20451293 20451293 A - PUM2 3'UTR 0.27 TCGA-DM-A1HB-01 2 209036713 209036713 C A C2orf80 Missense_Mutation p.Q151H 0.36 tolerated(0.23) probably_damaging(0.946) TCGA-DM-A1HB-01 2 209167032 209167032 C T PIKFYVE Silent p.H425H 0.31 TCGA-DM-A1HB-01 2 210642051 210642051 C - UNC80 Frame_Shift_Del p.Q125Rfs*109 0.27 TCGA-DM-A1HB-01 2 211018975 211018975 T - KANSL1L Frame_Shift_Del p.N111Tfs*36 0.28 TCGA-DM-A1HB-01 2 211299123 211299123 T C LANCL1 3'UTR 0.26 TCGA-DM-A1HB-01 2 21227430 21227430 T C APOB Intron 0.28 TCGA-DM-A1HB-01 2 21260932 21260932 C T APOB Silent p.P145P 0.34 TCGA-DM-A1HB-01 2 217297571 217297571 G A SMARCAL1 Missense_Mutation p.V489M 0.32 deleterious(0.02) probably_damaging(1) TCGA-DM-A1HB-01 2 218678532 218678532 C T TNS1 Silent p.A1475A 0.29 TCGA-DM-A1HB-01 2 219679428 219679428 C T CYP27A1 Missense_Mutation p.A475V 0.34 deleterious(0) possibly_damaging(0.906) TCGA-DM-A1HB-01 2 220353602 220353602 C T SPEG Missense_Mutation p.T2710M 0.36 probably_damaging(0.998) TCGA-DM-A1HB-01 2 220502413 220502413 C - SLC4A3 Frame_Shift_Del p.S912Afs*22 0.26 TCGA-DM-A1HB-01 2 225662630 225662630 G T DOCK10 Silent p.T1521T 0.30 TCGA-DM-A1HB-01 2 228846310 228846310 T - SPHKAP 3'UTR 0.47 TCGA-DM-A1HB-01 2 230231679 230231679 C T DNER Missense_Mutation p.G671D 0.30 deleterious(0.01) probably_damaging(0.952) TCGA-DM-A1HB-01 2 230643168 230643168 G A TRIP12 Missense_Mutation p.A1707V 0.24 tolerated(0.06) probably_damaging(0.996) TCGA-DM-A1HB-01 2 233345163 233345163 G A ECEL1 Missense_Mutation p.S725L 0.29 tolerated(0.16) benign(0.029) TCGA-DM-A1HB-01 2 234580826 234580826 C A UGT1A9 Silent p.T82T 0.05 TCGA-DM-A1HB-01 2 237172814 237172815 - G ASB18 Frame_Shift_Ins p.S59Lfs*32 0.20 TCGA-DM-A1HB-01 2 238249236 238249236 C T COL6A3 Missense_Mutation p.G2775S 0.34 unknown(0) TCGA-DM-A1HB-01 2 238285893 238285893 A G COL6A3 Silent p.D864D 0.38 TCGA-DM-A1HB-01 2 239079047 239079047 A - ILKAP 3'UTR 0.48 TCGA-DM-A1HB-01 2 240024556 240024556 G A HDAC4 Nonsense_Mutation p.Q712* 0.42 TCGA-DM-A1HB-01 2 241073354 241073354 A - MYEOV2 Frame_Shift_Del p.F75Lfs*57 0.30 TCGA-DM-A1HB-01 2 241463443 241463444 CA - ANKMY1 Frame_Shift_Del p.C475Rfs*164 0.38 TCGA-DM-A1HB-01 2 241468549 241468549 A G ANKMY1 Silent p.N197N 0.35 TCGA-DM-A1HB-01 2 241631426 241631426 C T AQP12A Silent p.G32G 0.37 TCGA-DM-A1HB-01 2 242283176 242283176 C T SEPT2 Missense_Mutation p.P236S 0.40 deleterious(0) possibly_damaging(0.886) TCGA-DM-A1HB-01 2 242651426 242651426 G - ING5 Frame_Shift_Del p.G142Afs*58 0.27 TCGA-DM-A1HB-01 2 242741319 242741319 C T GAL3ST2 Silent p.S81S 0.35 TCGA-DM-A1HB-01 2 24980892 24980892 T C NCOA1 Missense_Mutation p.V1311A 0.31 tolerated(0.27) benign(0.113) TCGA-DM-A1HB-01 2 25360238 25360238 A G EFR3B Missense_Mutation p.Y530C 0.05 deleterious(0) probably_damaging(0.989) TCGA-DM-A1HB-01 2 25384184 25384184 G A POMC Silent p.G190G 0.45 TCGA-DM-A1HB-01 2 27277614 27277614 G A AGBL5 Missense_Mutation p.R223H 0.49 deleterious(0) probably_damaging(0.99) TCGA-DM-A1HB-01 2 27522277 27522277 G A TRIM54 Missense_Mutation p.R169H 0.28 tolerated(0.1) benign(0.081) TCGA-DM-A1HB-01 2 29274996 29274996 T - FAM179A 3'UTR 0.41 TCGA-DM-A1HB-01 2 29286867 29286867 G T C2orf71 3'UTR 0.40 TCGA-DM-A1HB-01 2 29287719 29287719 C - C2orf71 3'UTR 0.25 TCGA-DM-A1HB-01 2 31360946 31360946 G A GALNT14 Missense_Mutation p.R3C 0.38 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-DM-A1HB-01 2 33359777 33359778 - T LTBP1 Intron 0.31 TCGA-DM-A1HB-01 2 42720544 42720544 C T KCNG3 Missense_Mutation p.R33H 0.46 deleterious(0) possibly_damaging(0.671) TCGA-DM-A1HB-01 2 46808081 46808081 C T RHOQ Silent p.C159C 0.05 TCGA-DM-A1HB-01 2 46986500 46986500 T C SOCS5 Silent p.D277D 0.05 TCGA-DM-A1HB-01 2 46987932 46987932 A G SOCS5 3'UTR 0.41 TCGA-DM-A1HB-01 2 46989892 46989892 A G SOCS5 3'UTR 0.25 TCGA-DM-A1HB-01 2 47357395 47357395 A T C2orf61 Missense_Mutation p.L135H 0.30 tolerated(0.05) probably_damaging(0.922) TCGA-DM-A1HB-01 2 47710166 47710166 T - MSH2 3'UTR 0.25 TCGA-DM-A1HB-01 2 53995089 53995089 C T CHAC2 Silent p.V22V 0.39 TCGA-DM-A1HB-01 2 56144874 56144874 C T EFEMP1 Missense_Mutation p.R148H 0.35 tolerated(0.53) benign(0.021) TCGA-DM-A1HB-01 2 61414909 61414909 A - AHSA2 3'UTR 0.21 TCGA-DM-A1HB-01 2 61473530 61473530 C T USP34 Silent p.T2159T 0.31 TCGA-DM-A1HB-01 2 61622318 61622318 A G USP34 Silent p.N201N 0.32 TCGA-DM-A1HB-01 2 63272467 63272467 C T EHBP1 Intron 0.46 TCGA-DM-A1HB-01 2 64117301 64117301 A - UGP2 Frame_Shift_Del p.N469Mfs*4 0.26 TCGA-DM-A1HB-01 2 64118329 64118329 G A UGP2 Missense_Mutation p.V499M 0.29 deleterious(0.01) possibly_damaging(0.717) TCGA-DM-A1HB-01 2 71653768 71653768 G A ZNF638 Missense_Mutation p.R1590H 0.41 tolerated(0.69) benign(0.001) TCGA-DM-A1HB-01 2 72362011 72362011 A G CYP26B1 Missense_Mutation p.L247P 0.36 deleterious(0) probably_damaging(0.939) TCGA-DM-A1HB-01 2 75276811 75276811 G - TACR1 Frame_Shift_Del p.F325Sfs*12 0.16 TCGA-DM-A1HB-01 2 85361466 85361466 G A TCF7L1 Missense_Mutation p.A112T 0.33 tolerated(0.19) possibly_damaging(0.532) TCGA-DM-A1HB-01 2 8871212 8871212 T C KIDINS220 Missense_Mutation p.S1652G 0.29 deleterious_low_confidence(0.03) benign(0.265) TCGA-DM-A1HB-01 2 89065533 89065533 C T AC096579.1 5'Flank 0.31 TCGA-DM-A1HB-01 2 8917024 8917024 T G KIDINS220 Splice_Site p.X902_splice 0.30 TCGA-DM-A1HB-01 2 90229516 90229516 G T IGKV1D-42 Missense_Mutation p.Q112H 0.29 tolerated(0.05) benign(0.153) TCGA-DM-A1HB-01 2 96687157 96687157 C - GPAT2 3'Flank 0.25 TCGA-DM-A1HB-01 2 98354129 98354129 G A ZAP70 Splice_Site p.X494_splice 0.47 TCGA-DM-A1HB-01 2 99242038 99242038 G T MGAT4A Silent p.A533A 0.28 TCGA-DM-A1HB-01 2 99778493 99778493 A - LIPT1 Frame_Shift_Del p.T27Qfs*2 0.27 TCGA-DM-A1HB-01 2 99944083 99944083 C A TXNDC9 Nonsense_Mutation p.E75* 0.29 TCGA-DM-A1HB-01 3 101311692 101311692 T - PCNP 3'UTR 0.25 TCGA-DM-A1HB-01 3 10443876 10443876 C T ATP2B2 Missense_Mutation p.R185H 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A1HB-01 3 10452379 10452379 G A ATP2B2 Missense_Mutation p.T107M 0.32 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 3 105389172 105389172 C T CBLB Missense_Mutation p.G865D 0.35 deleterious_low_confidence(0.02) benign(0.05) TCGA-DM-A1HB-01 3 108076980 108076980 T G HHLA2 Silent p.T325T 0.35 TCGA-DM-A1HB-01 3 11067522 11067522 G A SLC6A1 Missense_Mutation p.A305T 0.37 deleterious(0.03) probably_damaging(1) TCGA-DM-A1HB-01 3 111313013 111313013 T C ZBED2 Silent p.T12T 0.36 TCGA-DM-A1HB-01 3 111927187 111927187 T C SLC9C1 Silent p.V608V 0.35 TCGA-DM-A1HB-01 3 112998801 112998801 T C BOC Silent p.Y717Y 0.30 TCGA-DM-A1HB-01 3 122575211 122575211 G A DIRC2 Missense_Mutation p.A334T 0.40 tolerated(0.25) benign(0.037) TCGA-DM-A1HB-01 3 125271327 125271327 G T OSBPL11 Missense_Mutation p.P451H 0.06 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 3 126071596 126071596 G C KLF15 Missense_Mutation p.S57C 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DM-A1HB-01 3 126708063 126708063 C T PLXNA1 Silent p.N209N 0.36 TCGA-DM-A1HB-01 3 127783746 127783746 G A SEC61A1 Missense_Mutation p.A215T 0.39 deleterious(0) probably_damaging(0.95) TCGA-DM-A1HB-01 3 130285811 130285811 C T COL6A6 Silent p.G516G 0.39 TCGA-DM-A1HB-01 3 130889730 130889730 T C NEK11 Silent p.H466H 0.35 TCGA-DM-A1HB-01 3 13612428 13612428 A G FBLN2 Silent p.R191R 0.42 TCGA-DM-A1HB-01 3 137843167 137843167 C A A4GNT Missense_Mutation p.R321M 0.34 deleterious(0.02) possibly_damaging(0.684) TCGA-DM-A1HB-01 3 139071513 139071516 ATAG - MRPS22 Frame_Shift_Del p.D254Nfs*22 0.41 TCGA-DM-A1HB-01 3 142741750 142741750 T G U2SURP Missense_Mutation p.I358M 0.24 deleterious(0) probably_damaging(0.985) TCGA-DM-A1HB-01 3 143691236 143691236 T C C3orf58 Missense_Mutation p.L21P 0.26 tolerated_low_confidence(0.13) possibly_damaging(0.883) TCGA-DM-A1HB-01 3 14548383 14548383 G A GRIP2 RNA 0.38 TCGA-DM-A1HB-01 3 150421525 150421525 T A FAM194A Missense_Mutation p.E54V 0.30 deleterious_low_confidence(0) benign(0.024) TCGA-DM-A1HB-01 3 15269377 15269377 A - CAPN7 Frame_Shift_Del p.K253Nfs*21 0.24 TCGA-DM-A1HB-01 3 152884981 152884981 C T RAP2B 3'UTR 0.41 TCGA-DM-A1HB-01 3 15475863 15475863 G A EAF1 Missense_Mutation p.G115D 0.27 deleterious(0.01) probably_damaging(1) TCGA-DM-A1HB-01 3 160395086 160395090 AAAGA - ARL14 5'UTR 0.14 TCGA-DM-A1HB-01 3 167762644 167762644 G A GOLIM4 Missense_Mutation p.A113V 0.36 deleterious(0) possibly_damaging(0.841) TCGA-DM-A1HB-01 3 169831236 169831236 A G PHC3 Silent p.N755N 0.36 TCGA-DM-A1HB-01 3 170185077 170185077 T C SLC7A14 Silent p.Q694Q 0.34 TCGA-DM-A1HB-01 3 172351348 172351348 T C NCEH1 Missense_Mutation p.I422V 0.41 tolerated(0.42) possibly_damaging(0.523) TCGA-DM-A1HB-01 3 17333464 17333464 C A TBC1D5 Missense_Mutation p.G390C 0.23 deleterious(0) probably_damaging(0.987) TCGA-DM-A1HB-01 3 17333465 17333465 G A TBC1D5 Silent p.L389L 0.35 TCGA-DM-A1HB-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.35 tolerated(0.11) possibly_damaging(0.529) TCGA-DM-A1HB-01 3 180326351 180326351 T C TTC14 Intron 0.34 TCGA-DM-A1HB-01 3 181430577 181430577 C T SOX2 Silent p.V143V 0.28 TCGA-DM-A1HB-01 3 182872079 182872079 T - LAMP3 Frame_Shift_Del p.K50Nfs*15 0.25 TCGA-DM-A1HB-01 3 183639142 183639142 G A ABCC5 Silent p.S1420S 0.37 TCGA-DM-A1HB-01 3 183823101 183823101 A G HTR3E Silent p.T228T 0.39 TCGA-DM-A1HB-01 3 184020260 184020260 A G PSMD2 Silent p.A269A 0.39 TCGA-DM-A1HB-01 3 184033484 184033484 T A EIF4G1 5'UTR 0.44 TCGA-DM-A1HB-01 3 18457575 18457575 C T SATB1 Missense_Mutation p.D147N 0.40 tolerated(0.08) benign(0.374) TCGA-DM-A1HB-01 3 185797641 185797641 C T ETV5 Silent p.K205K 0.33 TCGA-DM-A1HB-01 3 186370221 186370221 A - FETUB Frame_Shift_Del p.K318Rfs*13 0.26 TCGA-DM-A1HB-01 3 186459580 186459580 C T KNG1 Silent p.H465H 0.39 TCGA-DM-A1HB-01 3 186505659 186505659 A G EIF4A2 Missense_Mutation p.N356S 0.45 tolerated(0.16) benign(0.09) TCGA-DM-A1HB-01 3 193082018 193082018 C T ATP13A5 Missense_Mutation p.A39T 0.29 tolerated(0.09) benign(0.004) TCGA-DM-A1HB-01 3 195295847 195295847 T - APOD Frame_Shift_Del p.N165Ifs*3 0.22 TCGA-DM-A1HB-01 3 195393084 195393084 G T SDHAP2 Intron 0.32 TCGA-DM-A1HB-01 3 20189912 20189912 G A KAT2B Nonsense_Mutation p.W746* 0.40 TCGA-DM-A1HB-01 3 20194018 20194018 T - KAT2B 3'UTR 0.36 TCGA-DM-A1HB-01 3 25639645 25639645 A T TOP2B 3'UTR 0.78 TCGA-DM-A1HB-01 3 27763048 27763048 G A EOMES Silent p.A246A 0.42 TCGA-DM-A1HB-01 3 30686356 30686356 G A TGFBR2 Missense_Mutation p.C96Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 3 32544197 32544197 T C CMTM6 Missense_Mutation p.D14G 0.35 tolerated(0.35) benign(0.024) TCGA-DM-A1HB-01 3 32769188 32769188 T C CNOT10 Silent p.C407C 0.23 TCGA-DM-A1HB-01 3 32859671 32859671 G C TRIM71 Silent p.S33S 0.16 TCGA-DM-A1HB-01 3 32995518 32995518 A G CCR4 Missense_Mutation p.S202G 0.37 tolerated(0.19) benign(0.328) TCGA-DM-A1HB-01 3 37357010 37357010 A - GOLGA4 Frame_Shift_Del p.T469Qfs*13 0.24 TCGA-DM-A1HB-01 3 38167802 38167802 G A ACAA1 Missense_Mutation p.A283V 0.39 deleterious(0) probably_damaging(0.994) TCGA-DM-A1HB-01 3 38354509 38354509 C T SLC22A14 Missense_Mutation p.R322W 0.42 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 3 38938570 38938570 A - SCN11A Frame_Shift_Del p.F723Lfs*37 0.28 TCGA-DM-A1HB-01 3 39174676 39174676 A G TTC21A Missense_Mutation p.D906G 0.25 deleterious(0.04) benign(0) TCGA-DM-A1HB-01 3 40353488 40353488 A T EIF1B Nonsense_Mutation p.K109* 0.28 TCGA-DM-A1HB-01 3 40553959 40553959 A C ZNF620 Missense_Mutation p.D73A 0.36 tolerated(0.08) benign(0.021) TCGA-DM-A1HB-01 3 42599101 42599101 C T SEC22C Missense_Mutation p.R205Q 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-DM-A1HB-01 3 44835884 44835884 A - KIF15 Frame_Shift_Del p.D274Ifs*7 0.28 TCGA-DM-A1HB-01 3 46414516 46414516 C T CCR5 Silent p.F41F 0.37 TCGA-DM-A1HB-01 3 47385352 47385352 A C KLHL18 Missense_Mutation p.D549A 0.30 deleterious(0) benign(0.26) TCGA-DM-A1HB-01 3 48310369 48310369 C G ZNF589 3'UTR 0.30 TCGA-DM-A1HB-01 3 48686292 48686292 G A CELSR3 Missense_Mutation p.R2213W 0.44 deleterious(0.01) probably_damaging(1) TCGA-DM-A1HB-01 3 48699374 48699374 G A CELSR3 Missense_Mutation p.R232W 0.46 tolerated_low_confidence(0.1) benign(0) TCGA-DM-A1HB-01 3 49094987 49094987 C T QRICH1 Missense_Mutation p.V216M 0.40 deleterious(0.01) possibly_damaging(0.593) TCGA-DM-A1HB-01 3 49153290 49153290 G T USP19 Missense_Mutation p.T518K 0.39 tolerated(0.18) benign(0.297) TCGA-DM-A1HB-01 3 49161177 49161177 C T LAMB2 Missense_Mutation p.A1261T 0.31 tolerated(0.29) benign(0.005) TCGA-DM-A1HB-01 3 49348111 49348111 G T USP4 Missense_Mutation p.P299H 0.04 deleterious(0) probably_damaging(0.991) TCGA-DM-A1HB-01 3 49348946 49348946 C - USP4 Splice_Site p.X279_splice 0.28 TCGA-DM-A1HB-01 3 49692806 49692806 C T BSN Silent p.S1939S 0.35 TCGA-DM-A1HB-01 3 49725254 49725254 G T MST1 Silent p.P57P 0.36 TCGA-DM-A1HB-01 3 50255793 50255793 A G SLC38A3 RNA 0.40 TCGA-DM-A1HB-01 3 51696569 51696569 T C RAD54L2 Silent p.L1179L 0.31 TCGA-DM-A1HB-01 3 52382985 52382985 C T DNAH1 Missense_Mutation p.R730W 0.39 benign(0.353) TCGA-DM-A1HB-01 3 52485813 52485813 G A TNNC1 Silent p.D88D 0.07 TCGA-DM-A1HB-01 3 52561923 52561923 T C NT5DC2 Missense_Mutation p.E286G 0.43 tolerated(0.05) probably_damaging(1) TCGA-DM-A1HB-01 3 5257570 5257570 G A EDEM1 Missense_Mutation p.M647I 0.33 deleterious(0.01) benign(0.064) TCGA-DM-A1HB-01 3 52800228 52800228 G T NEK4 Missense_Mutation p.P175H 0.36 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 3 53889347 53889347 A - IL17RB Frame_Shift_Del p.K172Sfs*23 0.39 TCGA-DM-A1HB-01 3 53910650 53910650 A - ACTR8 Frame_Shift_Del p.S259Qfs*18 0.28 TCGA-DM-A1HB-01 3 56657046 56657046 A - FAM208A 3'UTR 0.41 TCGA-DM-A1HB-01 3 57357605 57357605 T C DNAH12 Missense_Mutation p.K106E 0.32 tolerated(0.14) benign(0.085) TCGA-DM-A1HB-01 3 57456171 57456171 G A snoU13 5'Flank 0.34 TCGA-DM-A1HB-01 3 57469203 57469203 G T DNAH12 Missense_Mutation p.A517E 0.41 deleterious(0.01) possibly_damaging(0.587) TCGA-DM-A1HB-01 3 62262716 62262716 A G PTPRG Missense_Mutation p.Y1210C 0.41 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 3 64004300 64004300 A G PSMD6 Silent p.R267R 0.36 TCGA-DM-A1HB-01 3 66023706 66023706 C T MAGI1 Missense_Mutation p.C93Y 0.34 deleterious(0) possibly_damaging(0.905) TCGA-DM-A1HB-01 3 79638977 79638977 G T ROBO1 Missense_Mutation p.P29T 0.32 tolerated_low_confidence(0.25) benign(0) TCGA-DM-A1HB-01 3 88189015 88189015 C T ZNF654 Silent p.C185C 0.38 TCGA-DM-A1HB-01 3 8955325 8955325 T C RAD18 Intron 0.40 TCGA-DM-A1HB-01 3 95374100 95374100 G A MTHFD2P1 RNA 0.34 TCGA-DM-A1HB-01 3 97686351 97686351 C - MINA Frame_Shift_Del p.P30Lfs*4 0.22 TCGA-DM-A1HB-01 3 9803177 9803177 A C CAMK1 Missense_Mutation p.D200E 0.37 deleterious(0) benign(0.326) TCGA-DM-A1HB-01 3 99513113 99513113 G A COL8A1 Missense_Mutation p.R123H 0.37 tolerated(0.12) unknown(0) TCGA-DM-A1HB-01 4 100470501 100470501 A C TRMT10A Missense_Mutation p.I255S 0.38 deleterious(0) possibly_damaging(0.783) TCGA-DM-A1HB-01 4 100479232 100479232 T C TRMT10A Missense_Mutation p.S108G 0.38 deleterious(0.01) benign(0.051) TCGA-DM-A1HB-01 4 107845267 107845267 G T DKK2 Silent p.L208L 0.29 TCGA-DM-A1HB-01 4 113538885 113538886 - T C4orf21 Frame_Shift_Ins p.H772Afs*13 0.23 TCGA-DM-A1HB-01 4 114279772 114279772 T C ANK2 Missense_Mutation p.V3333A 0.29 benign(0.001) TCGA-DM-A1HB-01 4 115750955 115750955 C A NDST4 Missense_Mutation p.M830I 0.28 deleterious(0.03) possibly_damaging(0.831) TCGA-DM-A1HB-01 4 1164222 1164222 C T SPON2 Missense_Mutation p.S260N 0.03 tolerated(0.52) benign(0.002) TCGA-DM-A1HB-01 4 120188538 120188538 T C USP53 Silent p.L346L 0.30 TCGA-DM-A1HB-01 4 1206735 1206735 C T CTBP1 Missense_Mutation p.V369I 0.33 deleterious(0.01) benign(0.03) TCGA-DM-A1HB-01 4 122853662 122853662 T C TRPC3 Missense_Mutation p.M251V 0.39 tolerated(0.16) benign(0.01) TCGA-DM-A1HB-01 4 123202741 123202741 C A KIAA1109 Missense_Mutation p.T2950N 0.33 benign(0.25) TCGA-DM-A1HB-01 4 123245676 123245676 G A KIAA1109 Missense_Mutation p.R3630Q 0.39 probably_damaging(0.99) TCGA-DM-A1HB-01 4 123818748 123818748 T A FGF2 3'UTR 0.07 TCGA-DM-A1HB-01 4 125590728 125590728 G - ANKRD50 Frame_Shift_Del p.P1235Hfs*8 0.23 TCGA-DM-A1HB-01 4 1309312 1309312 G A MAEA Missense_Mutation p.R127H 0.35 deleterious(0) probably_damaging(0.987) TCGA-DM-A1HB-01 4 134073510 134073510 C T PCDH10 Missense_Mutation p.R739C 0.29 deleterious(0) possibly_damaging(0.891) TCGA-DM-A1HB-01 4 134084414 134084414 C T PCDH10 Missense_Mutation p.A1027V 0.30 deleterious_low_confidence(0.03) benign(0.119) TCGA-DM-A1HB-01 4 139966175 139966175 C T CCRN4L Silent p.C281C 0.41 TCGA-DM-A1HB-01 4 144480942 144480942 C T SMARCA5 3'Flank 0.26 TCGA-DM-A1HB-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.31 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 4 15341801 15341801 G A C1QTNF7 5'UTR 0.40 TCGA-DM-A1HB-01 4 155156673 155156673 C T DCHS2 Missense_Mutation p.R2589Q 0.40 tolerated(0.61) benign(0.013) TCGA-DM-A1HB-01 4 155252830 155252830 T G DCHS2 Missense_Mutation p.D757A 0.39 tolerated(0.78) benign(0.001) TCGA-DM-A1HB-01 4 155256197 155256197 C T DCHS2 Missense_Mutation p.V347I 0.21 tolerated(0.16) benign(0.308) TCGA-DM-A1HB-01 4 156764844 156764844 G A ASIC5 Missense_Mutation p.R284C 0.32 tolerated(0.09) benign(0.16) TCGA-DM-A1HB-01 4 160235904 160235904 G A RAPGEF2 Silent p.R118R 0.37 TCGA-DM-A1HB-01 4 160243505 160243505 T G RAPGEF2 Missense_Mutation p.L126R 0.21 deleterious(0) probably_damaging(0.993) TCGA-DM-A1HB-01 4 1670435 1670435 G A FAM53A Nonsense_Mutation p.Q12* 0.35 TCGA-DM-A1HB-01 4 169825044 169825044 C A PALLD Missense_Mutation p.A870D 0.29 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 4 183676319 183676319 C T TENM3 Missense_Mutation p.A1600V 0.29 deleterious(0.04) possibly_damaging(0.641) TCGA-DM-A1HB-01 4 184129183 184129183 G A WWC2 Missense_Mutation p.A107T 0.30 deleterious(0) probably_damaging(0.998) TCGA-DM-A1HB-01 4 186429655 186429655 T C PDLIM3 Missense_Mutation p.S154G 0.42 tolerated(0.12) benign(0.248) TCGA-DM-A1HB-01 4 186544215 186544215 G T SORBS2 Missense_Mutation p.P886T 0.34 deleterious(0.01) possibly_damaging(0.628) TCGA-DM-A1HB-01 4 186544734 186544734 G T SORBS2 Missense_Mutation p.L713I 0.38 tolerated(0.84) benign(0) TCGA-DM-A1HB-01 4 188925770 188925770 G A ZFP42 3'UTR 0.31 TCGA-DM-A1HB-01 4 1993326 1993326 C T NELFA Silent p.E120E 0.36 TCGA-DM-A1HB-01 4 1993434 1993434 G A NELFA Silent p.G84G 0.36 TCGA-DM-A1HB-01 4 2242078 2242079 - A HAUS3 Frame_Shift_Ins p.S199Ffs*30 0.21 TCGA-DM-A1HB-01 4 24557946 24557946 A G DHX15 Silent p.H263H 0.29 TCGA-DM-A1HB-01 4 2698177 2698177 A - FAM193A Frame_Shift_Del p.M833Wfs*23 0.27 TCGA-DM-A1HB-01 4 3039211 3039211 G A GRK4 Silent p.G506G 0.35 TCGA-DM-A1HB-01 4 36168552 36168552 A G ARAP2 Splice_Site p.X658_splice 0.36 TCGA-DM-A1HB-01 4 38029483 38029484 - T TBC1D1 Frame_Shift_Ins p.E431* 0.29 TCGA-DM-A1HB-01 4 38774936 38774936 T G TLR10 Missense_Mutation p.K759T 0.37 tolerated(0.14) possibly_damaging(0.796) TCGA-DM-A1HB-01 4 39915328 39915328 G A PDS5A Nonsense_Mutation p.R299* 0.39 TCGA-DM-A1HB-01 4 39929781 39929781 C T PDS5A Missense_Mutation p.V48I 0.35 tolerated(0.22) possibly_damaging(0.452) TCGA-DM-A1HB-01 4 40438589 40438589 C - RBM47 Frame_Shift_Del p.G400Dfs*45 0.30 TCGA-DM-A1HB-01 4 41983800 41983800 G A DCAF4L1 5'UTR 0.41 TCGA-DM-A1HB-01 4 41986520 41986520 C T DCAF4L1 3'UTR 0.36 TCGA-DM-A1HB-01 4 42895392 42895392 C T GRXCR1 Nonsense_Mutation p.Q37* 0.40 TCGA-DM-A1HB-01 4 44449815 44449815 C T KCTD8 Silent p.A242A 0.37 TCGA-DM-A1HB-01 4 48636501 48636501 G A FRYL 5'UTR 0.34 TCGA-DM-A1HB-01 4 56831849 56831849 C T CEP135 Missense_Mutation p.R290C 0.45 deleterious(0) possibly_damaging(0.847) TCGA-DM-A1HB-01 4 5696067 5696067 G A EVC2 Missense_Mutation p.R149C 0.31 deleterious(0.02) benign(0.38) TCGA-DM-A1HB-01 4 57344670 57344670 G A SRP72 Splice_Site p.X256_splice 0.27 TCGA-DM-A1HB-01 4 57389864 57389864 A G ARL9 Missense_Mutation p.D65G 0.45 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 4 5795436 5795436 C T EVC Silent p.L626L 0.33 TCGA-DM-A1HB-01 4 5800441 5800441 C T EVC Silent p.C742C 0.39 TCGA-DM-A1HB-01 4 65274938 65274938 G A TECRL Silent p.G44G 0.26 TCGA-DM-A1HB-01 4 66286173 66286173 T C EPHA5 Missense_Mutation p.K505E 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-DM-A1HB-01 4 6826182 6826182 T C KIAA0232 Translation_Start_Site p.M1? 0.37 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DM-A1HB-01 4 68691512 68691512 C T TMPRSS11D Missense_Mutation p.G345R 0.34 deleterious(0.02) probably_damaging(1) TCGA-DM-A1HB-01 4 71201964 71201964 A T CABS1 3'UTR 0.38 TCGA-DM-A1HB-01 4 71588258 71588259 - TG RUFY3 5'UTR 0.33 TCGA-DM-A1HB-01 4 71634279 71634279 C T RUFY3 Silent p.L199L 0.37 TCGA-DM-A1HB-01 4 728129 728129 C T PCGF3 Intron 0.38 TCGA-DM-A1HB-01 4 75858444 75858444 C A PARM1 5'UTR 0.39 TCGA-DM-A1HB-01 4 79860356 79860356 C T PAQR3 Missense_Mutation p.S8N 0.37 tolerated_low_confidence(0.15) benign(0.001) TCGA-DM-A1HB-01 4 8098963 8098963 G A ABLIM2 Silent p.G67G 0.04 TCGA-DM-A1HB-01 4 82090904 82090904 G A PRKG2 Missense_Mutation p.T254I 0.45 tolerated(0.39) benign(0.096) TCGA-DM-A1HB-01 4 8242647 8242647 T C SH3TC1 Missense_Mutation p.W1326R 0.34 tolerated(1) benign(0) TCGA-DM-A1HB-01 4 83347775 83347775 T A HNRNPDL Missense_Mutation p.N345Y 0.08 deleterious(0.05) possibly_damaging(0.781) TCGA-DM-A1HB-01 4 85414481 85414483 GCC - NKX6-1 In_Frame_Del p.G355del 0.32 TCGA-DM-A1HB-01 4 85566480 85566480 T C CDS1 Splice_Site p.X419_splice 0.32 TCGA-DM-A1HB-01 4 85747966 85747966 A G WDFY3 Splice_Site p.X375_splice 0.39 TCGA-DM-A1HB-01 4 87672008 87672008 A C PTPN13 Silent p.A1012A 0.38 TCGA-DM-A1HB-01 4 87769943 87769943 C - SLC10A6 Frame_Shift_Del p.G109Afs*21 0.28 TCGA-DM-A1HB-01 4 89607952 89607952 C T HERC3 Missense_Mutation p.T858M 0.26 deleterious(0.01) possibly_damaging(0.79) TCGA-DM-A1HB-01 4 90857472 90857472 A - MMRN1 Frame_Shift_Del p.G883Afs*3 0.24 TCGA-DM-A1HB-01 4 95199643 95199643 T C SMARCAD1 Missense_Mutation p.F718S 0.37 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 4 96469913 96469913 G A UNC5C Silent p.S32S 0.06 TCGA-DM-A1HB-01 4 9785349 9785349 G C DRD5 3'UTR 0.16 TCGA-DM-A1HB-01 4 99964527 99964527 A G METAP1 Missense_Mutation p.D215G 0.21 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 5 100191924 100191924 G T ST8SIA4 Missense_Mutation p.A227D 0.29 probably_damaging(0.979) TCGA-DM-A1HB-01 5 102611895 102611895 G A C5orf30 Missense_Mutation p.R92H 0.39 tolerated_low_confidence(0.59) benign(0) TCGA-DM-A1HB-01 5 109940905 109940905 T - TMEM232 Frame_Shift_Del p.N394Ifs*13 0.23 TCGA-DM-A1HB-01 5 112630134 112630134 A G MCC Intron 0.33 TCGA-DM-A1HB-01 5 122685716 122685716 C T CEP120 Missense_Mutation p.R883H 0.34 deleterious(0.03) benign(0.16) TCGA-DM-A1HB-01 5 132535490 132535490 C A FSTL4 Splice_Site p.X609_splice 0.36 TCGA-DM-A1HB-01 5 134102692 134102692 C T DDX46 Missense_Mutation p.R98W 0.37 deleterious(0.03) unknown(0) TCGA-DM-A1HB-01 5 136314405 136314405 C T SPOCK1 Missense_Mutation p.V420M 0.34 tolerated_low_confidence(0.07) benign(0.374) TCGA-DM-A1HB-01 5 138209727 138209727 G A LRRTM2 Missense_Mutation p.R175C 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 5 1394666 1394666 C T SLC6A3 3'UTR 0.50 TCGA-DM-A1HB-01 5 139494663 139494663 A G PURA Silent p.Q299Q 0.06 TCGA-DM-A1HB-01 5 140176747 140176747 C T PCDHA2 Missense_Mutation p.A733V 0.36 tolerated_low_confidence(0.06) benign(0.004) TCGA-DM-A1HB-01 5 140237173 140237173 G A PCDHA10 Missense_Mutation p.G514S 0.45 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-DM-A1HB-01 5 140242691 140242691 C T AC005609.1 Silent p.S95S 0.30 TCGA-DM-A1HB-01 5 140482288 140482288 G A PCDHB3 Silent p.L685L 0.38 TCGA-DM-A1HB-01 5 140625263 140625264 AG - PCDHB15 Frame_Shift_Del p.G42Ffs*9 0.27 TCGA-DM-A1HB-01 5 140711919 140711919 C T PCDHGA1 Silent p.N556N 0.49 TCGA-DM-A1HB-01 5 140745393 140745393 C T PCDHGA5 Missense_Mutation p.A499V 0.32 tolerated_low_confidence(0.36) benign(0.021) TCGA-DM-A1HB-01 5 140751608 140751608 C T PCDHGB3 Silent p.R549R 0.33 TCGA-DM-A1HB-01 5 140751674 140751674 C T PCDHGB3 Silent p.G571G 0.33 TCGA-DM-A1HB-01 5 141359736 141359738 CTC - RNF14 In_Frame_Del p.L296del 0.43 TCGA-DM-A1HB-01 5 14488129 14488129 G A TRIO Silent p.A2464A 0.38 TCGA-DM-A1HB-01 5 147466095 147466095 C T SPINK5 Missense_Mutation p.A137V 0.35 tolerated(0.28) benign(0.002) TCGA-DM-A1HB-01 5 149374933 149374933 G A TIGD6 Nonsense_Mutation p.Q327* 0.36 TCGA-DM-A1HB-01 5 149569865 149569865 T C SLC6A7 5'UTR 0.53 TCGA-DM-A1HB-01 5 149755011 149755011 C - TCOF1 Frame_Shift_Del p.S535Qfs*61 0.29 TCGA-DM-A1HB-01 5 150838438 150838438 C A SLC36A1 Missense_Mutation p.L29I 0.48 tolerated(0.32) benign(0.002) TCGA-DM-A1HB-01 5 150945559 150945559 T G FAT2 Silent p.T978T 0.38 TCGA-DM-A1HB-01 5 151043765 151043765 G A SPARC Missense_Mutation p.R256C 0.37 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 5 152870443 152870443 A G GRIA1 5'Flank 0.41 TCGA-DM-A1HB-01 5 157073781 157073781 A C SOX30 Silent p.P417P 0.45 TCGA-DM-A1HB-01 5 162945286 162945286 C T MAT2B Nonsense_Mutation p.R308* 0.33 TCGA-DM-A1HB-01 5 16682044 16682044 C A MYO10 Missense_Mutation p.W1375C 0.31 deleterious(0) probably_damaging(0.996) TCGA-DM-A1HB-01 5 16701126 16701126 C T MYO10 Silent p.G1126G 0.36 TCGA-DM-A1HB-01 5 169931570 169931570 C T KCNIP1 5'Flank 0.28 TCGA-DM-A1HB-01 5 175110615 175110615 C A HRH2 Missense_Mutation p.P127T 0.40 tolerated(0.17) benign(0.101) TCGA-DM-A1HB-01 5 176024732 176024732 T - GPRIN1 Frame_Shift_Del p.T702Rfs*12 0.32 TCGA-DM-A1HB-01 5 176315478 176315478 C T HK3 Missense_Mutation p.V387I 0.39 tolerated(0.36) benign(0.046) TCGA-DM-A1HB-01 5 176918896 176918896 A T PDLIM7 Missense_Mutation p.Y104N 0.41 tolerated(0.09) benign(0.001) TCGA-DM-A1HB-01 5 177474092 177474092 G A FAM153C Silent p.L135L 0.27 TCGA-DM-A1HB-01 5 177665624 177665624 T C COL23A1 3'UTR 0.38 TCGA-DM-A1HB-01 5 178139211 178139211 T C ZNF354A Silent p.G556G 0.28 TCGA-DM-A1HB-01 5 178358869 178358869 C A ZFP2 Silent p.P185P 0.41 TCGA-DM-A1HB-01 5 179079368 179079368 C T AC136604.1 3'Flank 0.43 TCGA-DM-A1HB-01 5 179264833 179264833 T C C5orf45 Missense_Mutation p.Q197R 0.39 tolerated(0.49) benign(0.005) TCGA-DM-A1HB-01 5 1879734 1879734 G A IRX4 Missense_Mutation p.T207M 0.34 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 5 2752319 2752319 C T C5orf38 5'UTR 0.29 TCGA-DM-A1HB-01 5 32074305 32074305 G T PDZD2 Silent p.S1031S 0.44 TCGA-DM-A1HB-01 5 3600194 3600194 G A IRX1 Missense_Mutation p.A378T 0.39 deleterious(0.01) benign(0.183) TCGA-DM-A1HB-01 5 36249633 36249633 T C RANBP3L 3'UTR 0.34 TCGA-DM-A1HB-01 5 40746898 40746898 A G TTC33 Splice_Site p.X74_splice 0.42 TCGA-DM-A1HB-01 5 480149 480149 C T SLC9A3 Intron 0.27 TCGA-DM-A1HB-01 5 49698134 49698134 C A EMB Missense_Mutation p.E299D 0.32 tolerated(0.39) possibly_damaging(0.888) TCGA-DM-A1HB-01 5 50689462 50689462 T - ISL1 3'UTR 0.32 TCGA-DM-A1HB-01 5 52781535 52781535 T C FST Intron 0.28 TCGA-DM-A1HB-01 5 57754844 57754844 T G PLK2 Missense_Mutation p.S116R 0.21 tolerated(0.06) benign(0.126) TCGA-DM-A1HB-01 5 60188009 60188009 C A ERCC8 Intron 0.43 TCGA-DM-A1HB-01 5 60188432 60188432 C A ERCC8 Intron 0.25 TCGA-DM-A1HB-01 5 64875253 64875253 G A PPWD1 Missense_Mutation p.C388Y 0.32 deleterious(0.02) benign(0.004) TCGA-DM-A1HB-01 5 6609968 6609968 A G NSUN2 Missense_Mutation p.S432P 0.05 tolerated(1) benign(0.006) TCGA-DM-A1HB-01 5 6751178 6751178 G A PAPD7 Silent p.T379T 0.29 TCGA-DM-A1HB-01 5 67522741 67522741 A - PIK3R1 Frame_Shift_Del p.I82Sfs*32 0.29 TCGA-DM-A1HB-01 5 76621418 76621418 T C PDE8B Missense_Mutation p.C152R 0.40 deleterious(0) probably_damaging(0.97) TCGA-DM-A1HB-01 5 77784910 77784910 T C LHFPL2 Missense_Mutation p.Y166C 0.37 tolerated(0.05) possibly_damaging(0.807) TCGA-DM-A1HB-01 5 7802383 7802383 C T ADCY2 Missense_Mutation p.P894L 0.45 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 5 83239108 83239108 A G EDIL3 3'UTR 0.25 TCGA-DM-A1HB-01 5 87521646 87521646 T C TMEM161B Missense_Mutation p.I77V 0.32 tolerated(1) benign(0.002) TCGA-DM-A1HB-01 5 9066558 9066558 G A SEMA5A Silent p.D758D 0.43 TCGA-DM-A1HB-01 5 9108394 9108394 C T SEMA5A Missense_Mutation p.C644Y 0.38 deleterious(0) possibly_damaging(0.701) TCGA-DM-A1HB-01 5 95067598 95067598 A G RHOBTB3 Missense_Mutation p.D13G 0.29 tolerated_low_confidence(0.18) benign(0.039) TCGA-DM-A1HB-01 5 96349422 96349422 A G LNPEP Silent p.V702V 0.29 TCGA-DM-A1HB-01 6 102247640 102247640 A G GRIK2 Missense_Mutation p.T357A 0.31 tolerated(0.5) benign(0) TCGA-DM-A1HB-01 6 10419772 10419774 TCC - TFAP2A 5'Flank 0.39 TCGA-DM-A1HB-01 6 10709690 10709690 C T PAK1IP1 3'UTR 0.40 TCGA-DM-A1HB-01 6 107956602 107956602 G A SOBP Missense_Mutation p.A852T 0.32 tolerated(0.44) benign(0.003) TCGA-DM-A1HB-01 6 10802270 10802270 T C MAK Missense_Mutation p.Q229R 0.42 tolerated(0.07) benign(0.057) TCGA-DM-A1HB-01 6 109797392 109797392 T C ZBTB24 Missense_Mutation p.Y397C 0.36 deleterious(0.03) benign(0.214) TCGA-DM-A1HB-01 6 109977994 109977994 T C AK9 Missense_Mutation p.K242E 0.39 tolerated(0.42) benign(0.309) TCGA-DM-A1HB-01 6 110714234 110714234 C T DDO Missense_Mutation p.R285Q 0.39 tolerated(0.24) probably_damaging(0.995) TCGA-DM-A1HB-01 6 112400842 112400842 C A TUBE1 Nonsense_Mutation p.G148* 0.31 TCGA-DM-A1HB-01 6 112512916 112512916 G A LAMA4 Missense_Mutation p.R214C 0.43 deleterious(0.02) probably_damaging(0.967) TCGA-DM-A1HB-01 6 116263670 116263670 C A FRK Missense_Mutation p.K475N 0.32 tolerated(0.06) benign(0.009) TCGA-DM-A1HB-01 6 125584083 125584083 C T TPD52L1 Missense_Mutation p.T197I 0.29 tolerated_low_confidence(0.16) benign(0.009) TCGA-DM-A1HB-01 6 132271089 132271089 C A CTGF Missense_Mutation p.K251N 0.34 deleterious(0) probably_damaging(0.917) TCGA-DM-A1HB-01 6 13977651 13977651 C A RNF182 Missense_Mutation p.L101M 0.40 tolerated(0.22) possibly_damaging(0.472) TCGA-DM-A1HB-01 6 13978827 13978827 T C RNF182 3'UTR 0.28 TCGA-DM-A1HB-01 6 13979931 13979931 A T RNF182 3'UTR 0.38 TCGA-DM-A1HB-01 6 143074610 143074611 - T HIVEP2 Frame_Shift_Ins p.N2325Kfs*44 0.24 TCGA-DM-A1HB-01 6 144780375 144780375 C A UTRN Silent p.A864A 0.43 TCGA-DM-A1HB-01 6 144812083 144812083 T C UTRN Missense_Mutation p.S1428P 0.41 deleterious(0.01) possibly_damaging(0.772) TCGA-DM-A1HB-01 6 145069582 145069582 C T UTRN Missense_Mutation p.R2714W 0.30 deleterious(0) probably_damaging(0.982) TCGA-DM-A1HB-01 6 149068808 149068808 A G UST Missense_Mutation p.Y81C 0.30 deleterious_low_confidence(0) possibly_damaging(0.712) TCGA-DM-A1HB-01 6 149842197 149842197 T - PPIL4 Frame_Shift_Del p.G328Vfs*24 0.22 TCGA-DM-A1HB-01 6 149982828 149982829 - T LATS1 3'UTR 0.26 TCGA-DM-A1HB-01 6 150023094 150023094 T C LATS1 Missense_Mutation p.M57V 0.40 tolerated_low_confidence(0.31) benign(0.008) TCGA-DM-A1HB-01 6 151687566 151687566 G A ZBTB2 Missense_Mutation p.P212L 0.32 tolerated(0.33) benign(0.025) TCGA-DM-A1HB-01 6 151766726 151766726 T - RMND1 Frame_Shift_Del p.K74Sfs*10 0.27 TCGA-DM-A1HB-01 6 151936811 151936811 G A CCDC170 Silent p.K648K 0.37 TCGA-DM-A1HB-01 6 152719797 152719797 G A SYNE1 Missense_Mutation p.T2436I 0.27 possibly_damaging(0.501) TCGA-DM-A1HB-01 6 152770691 152770691 C T SYNE1 Missense_Mutation p.G1161R 0.28 benign(0.003) TCGA-DM-A1HB-01 6 153296083 153296083 T A FBXO5 Missense_Mutation p.L259F 0.30 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 6 158870206 158870206 A G TULP4 Missense_Mutation p.Q241R 0.12 tolerated(0.05) possibly_damaging(0.718) TCGA-DM-A1HB-01 6 159660825 159660825 G A FNDC1 Missense_Mutation p.R1486H 0.29 tolerated_low_confidence(0.06) benign(0.007) TCGA-DM-A1HB-01 6 16295255 16295256 TG - GMPR Frame_Shift_Del p.V293Gfs*87 0.47 TCGA-DM-A1HB-01 6 16328402 16328402 G A ATXN1 Missense_Mutation p.P47L 0.45 tolerated(0.05) benign(0.154) TCGA-DM-A1HB-01 6 167550548 167550548 C T CCR6 Missense_Mutation p.T277M 0.34 tolerated(0.08) possibly_damaging(0.75) TCGA-DM-A1HB-01 6 168377303 168377303 G T RP3-470B24.5 RNA 0.33 TCGA-DM-A1HB-01 6 168377304 168377304 G T RP3-470B24.5 RNA 0.32 TCGA-DM-A1HB-01 6 169637837 169637837 C T THBS2 Missense_Mutation p.V395M 0.40 deleterious(0.01) possibly_damaging(0.836) TCGA-DM-A1HB-01 6 170105740 170105740 A C PHF10 Silent p.L398L 0.33 TCGA-DM-A1HB-01 6 170179367 170179367 C T ERMARD Missense_Mutation p.A610V 0.34 tolerated(0.3) benign(0.073) TCGA-DM-A1HB-01 6 170592909 170592909 C T DLL1 Silent p.E486E 0.57 TCGA-DM-A1HB-01 6 17826271 17826271 A - KIF13A Frame_Shift_Del p.F539Lfs*3 0.28 TCGA-DM-A1HB-01 6 18143948 18143948 C A TPMT Missense_Mutation p.R82L 0.31 tolerated(0.69) benign(0.004) TCGA-DM-A1HB-01 6 21596857 21596857 T - SOX4 3'UTR 0.30 TCGA-DM-A1HB-01 6 21597509 21597509 A - SOX4 3'UTR 0.27 TCGA-DM-A1HB-01 6 24556907 24556907 G A KIAA0319 Missense_Mutation p.R929C 0.43 deleterious(0) probably_damaging(0.915) TCGA-DM-A1HB-01 6 25830753 25830753 T - SLC17A1 Frame_Shift_Del p.V12Ffs*21 0.24 TCGA-DM-A1HB-01 6 26384058 26384058 A C BTN2A2 Silent p.P3P 0.33 TCGA-DM-A1HB-01 6 27782824 27782824 G A HIST1H2BM Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0.05) benign(0.007) TCGA-DM-A1HB-01 6 27806585 27806585 T C HIST1H2BN Missense_Mutation p.V49A 0.30 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-DM-A1HB-01 6 27840944 27840944 G A HIST1H4L 3'UTR 0.37 TCGA-DM-A1HB-01 6 29231805 29231805 T C XXbac-BPG308J9.3 RNA 0.27 TCGA-DM-A1HB-01 6 29323942 29323942 C A OR5V1 Nonsense_Mutation p.E11* 0.36 TCGA-DM-A1HB-01 6 30657191 30657191 A G NRM Silent p.P123P 0.36 TCGA-DM-A1HB-01 6 3123967 3123967 G A BPHL Missense_Mutation p.A62T 0.36 tolerated(0.16) benign(0.01) TCGA-DM-A1HB-01 6 31504446 31504446 A - DDX39B Frame_Shift_Del p.F149Lfs*13 0.43 TCGA-DM-A1HB-01 6 31729894 31729894 A T MSH5 Silent p.S776S 0.37 TCGA-DM-A1HB-01 6 31733508 31733508 G T VWA7 Missense_Mutation p.L847I 0.37 tolerated(0.24) benign(0.099) TCGA-DM-A1HB-01 6 32188182 32188182 C A NOTCH4 Nonsense_Mutation p.G387* 0.43 TCGA-DM-A1HB-01 6 32974464 32974464 A - HLA-DOA 3'UTR 0.35 TCGA-DM-A1HB-01 6 33143401 33143401 G A COL11A2 Missense_Mutation p.R690C 0.34 possibly_damaging(0.835) TCGA-DM-A1HB-01 6 33154402 33154402 A G COL11A2 Splice_Site p.X266_splice 0.36 TCGA-DM-A1HB-01 6 33380094 33380094 A G PHF1 Silent p.P18P 0.41 TCGA-DM-A1HB-01 6 34507072 34507072 G A SPDEF Missense_Mutation p.P262S 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-DM-A1HB-01 6 34725310 34725310 T C SNRPC 5'UTR 0.29 TCGA-DM-A1HB-01 6 35442747 35442747 C - TEAD3 3'UTR 0.27 TCGA-DM-A1HB-01 6 35477438 35477438 G A TULP1 Missense_Mutation p.P231S 0.31 tolerated(0.12) benign(0.018) TCGA-DM-A1HB-01 6 36168077 36168077 T C BRPF3 5'UTR 0.31 TCGA-DM-A1HB-01 6 36294328 36294328 A G C6orf222 Missense_Mutation p.L332P 0.36 deleterious(0) probably_damaging(0.955) TCGA-DM-A1HB-01 6 37426522 37426522 C G CMTR1 Silent p.G304G 0.37 TCGA-DM-A1HB-01 6 3751562 3751562 G A PXDC1 Silent p.R68R 0.46 TCGA-DM-A1HB-01 6 37618076 37618076 A T MDGA1 Missense_Mutation p.V473E 0.40 deleterious(0) benign(0.149) TCGA-DM-A1HB-01 6 39053715 39053715 T C GLP1R Missense_Mutation p.W420R 0.36 deleterious(0.02) probably_damaging(0.987) TCGA-DM-A1HB-01 6 40400586 40400586 G A LRFN2 Silent p.S89S 0.38 TCGA-DM-A1HB-01 6 4069382 4069382 A G FAM217A Missense_Mutation p.S359P 0.29 deleterious(0.04) benign(0.178) TCGA-DM-A1HB-01 6 41248800 41248800 A G TREM1 Silent p.Y166Y 0.34 TCGA-DM-A1HB-01 6 42928653 42928653 C A GNMT Missense_Mutation p.L50I 0.32 tolerated(0.27) benign(0.005) TCGA-DM-A1HB-01 6 42957388 42957388 A G PPP2R5D Missense_Mutation p.S23G 0.40 tolerated(0.27) benign(0) TCGA-DM-A1HB-01 6 43024170 43024170 C T MRPL2 Silent p.V93V 0.33 TCGA-DM-A1HB-01 6 43172506 43172506 C T CUL9 Missense_Mutation p.R1454W 0.32 deleterious(0.02) benign(0.028) TCGA-DM-A1HB-01 6 43270114 43270114 C T SLC22A7 Missense_Mutation p.T413M 0.27 deleterious(0) probably_damaging(0.922) TCGA-DM-A1HB-01 6 43271894 43271894 G T SLC22A7 Missense_Mutation p.A502S 0.33 tolerated(0.07) benign(0.212) TCGA-DM-A1HB-01 6 43417169 43417169 A G ABCC10 Missense_Mutation p.I1405V 0.32 deleterious(0) probably_damaging(0.969) TCGA-DM-A1HB-01 6 43484543 43484543 C A YIPF3 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) unknown(0) TCGA-DM-A1HB-01 6 44272927 44272927 T C AARS2 Silent p.A481A 0.32 TCGA-DM-A1HB-01 6 46803221 46803221 A G MEP1A Silent p.P673P 0.45 TCGA-DM-A1HB-01 6 4735034 4735034 G A CDYL Missense_Mutation p.V48M 0.41 deleterious_low_confidence(0.02) benign(0) TCGA-DM-A1HB-01 6 49986604 49986604 C T DEFB110 3'UTR 0.44 TCGA-DM-A1HB-01 6 50681650 50681650 C A TFAP2D 5'UTR 0.47 TCGA-DM-A1HB-01 6 50718930 50718930 C T TFAP2D Silent p.I344I 0.32 TCGA-DM-A1HB-01 6 50803793 50803793 G A TFAP2B Silent p.S207S 0.30 TCGA-DM-A1HB-01 6 52658990 52658990 T C GSTA1 Missense_Mutation p.E116G 0.31 deleterious(0.03) benign(0.377) TCGA-DM-A1HB-01 6 56341083 56341083 C A DST Missense_Mutation p.G4620V 0.36 possibly_damaging(0.743) TCGA-DM-A1HB-01 6 56499737 56499739 TTC - DST In_Frame_Del p.E530del 0.24 TCGA-DM-A1HB-01 6 57512657 57512657 A G PRIM2 3'UTR 0.11 TCGA-DM-A1HB-01 6 63990306 63990306 A G LGSN Missense_Mutation p.W384R 0.44 tolerated(0.06) probably_damaging(0.973) TCGA-DM-A1HB-01 6 72806812 72806812 C T RIMS1 Missense_Mutation p.R136C 0.35 deleterious(0) benign(0.391) TCGA-DM-A1HB-01 6 74063752 74063752 G A DPPA5 Missense_Mutation p.P39L 0.41 deleterious(0.01) benign(0.138) TCGA-DM-A1HB-01 6 7580442 7580442 G A DSP Missense_Mutation p.R1340H 0.32 benign(0.002) TCGA-DM-A1HB-01 6 75840608 75840608 C T COL12A1 Silent p.S2009S 0.35 TCGA-DM-A1HB-01 6 76022687 76022687 A G FILIP1 Missense_Mutation p.I954T 0.32 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 6 76405523 76405523 C A SENP6 Nonsense_Mutation p.Y693* 0.32 TCGA-DM-A1HB-01 6 89888394 89888394 T - GABRR1 3'UTR 0.36 TCGA-DM-A1HB-01 6 9900707 9900707 T C OFCC1 Intron 0.32 TCGA-DM-A1HB-01 7 100086094 100086094 C T NYAP1 Silent p.A250A 0.43 TCGA-DM-A1HB-01 7 100841562 100841562 C - MOGAT3 Frame_Shift_Del p.G193Vfs*28 0.22 TCGA-DM-A1HB-01 7 102114876 102114876 G - POLR2J Frame_Shift_Del p.Q84Rfs*26 0.19 TCGA-DM-A1HB-01 7 105644979 105644979 C T CDHR3 Nonsense_Mutation p.R300* 0.40 TCGA-DM-A1HB-01 7 107312638 107312638 T - SLC26A4 Frame_Shift_Del p.F122Sfs*4 0.25 TCGA-DM-A1HB-01 7 107350540 107350540 G A SLC26A4 Missense_Mutation p.D711N 0.34 tolerated(0.22) probably_damaging(0.969) TCGA-DM-A1HB-01 7 107423292 107423292 C T SLC26A3 Missense_Mutation p.V421M 0.39 deleterious(0) probably_damaging(0.977) TCGA-DM-A1HB-01 7 107564774 107564774 T - LAMB1 Frame_Shift_Del p.T1709Lfs*22 0.27 TCGA-DM-A1HB-01 7 107710182 107710182 A G LAMB4 Missense_Mutation p.M758T 0.39 deleterious(0.02) benign(0.007) TCGA-DM-A1HB-01 7 107871522 107871522 C T NRCAM Missense_Mutation p.R168K 0.35 deleterious(0.04) benign(0.142) TCGA-DM-A1HB-01 7 108213393 108213393 G T DNAJB9 Nonsense_Mutation p.G90* 0.30 TCGA-DM-A1HB-01 7 10978485 10978485 A G NDUFA4 Silent p.T27T 0.06 TCGA-DM-A1HB-01 7 116139966 116139966 G A CAV2 Missense_Mutation p.R44Q 0.34 tolerated(0.6) benign(0.004) TCGA-DM-A1HB-01 7 116165017 116165017 T - CAV1 5'UTR 0.47 TCGA-DM-A1HB-01 7 124404301 124404301 G A GPR37 Missense_Mutation p.R244C 0.36 deleterious(0) possibly_damaging(0.614) TCGA-DM-A1HB-01 7 127013549 127013549 T - ZNF800 Frame_Shift_Del p.N614Tfs*56 0.25 TCGA-DM-A1HB-01 7 127222289 127222289 G A GCC1 Nonsense_Mutation p.Q703* 0.32 TCGA-DM-A1HB-01 7 127229600 127229600 C A ARF5 Silent p.G70G 0.31 TCGA-DM-A1HB-01 7 12729850 12729850 A C ARL4A 3'UTR 0.36 TCGA-DM-A1HB-01 7 128454864 128454864 G - CCDC136 Frame_Shift_Del p.K981Rfs*7 0.25 TCGA-DM-A1HB-01 7 128478790 128478790 T C FLNC Silent p.H448H 0.43 TCGA-DM-A1HB-01 7 130007749 130007749 C T CPA5 Silent p.Y347Y 0.33 TCGA-DM-A1HB-01 7 130135246 130135246 G A MEST Missense_Mutation p.V22M 0.33 tolerated(0.19) benign(0.02) TCGA-DM-A1HB-01 7 130417913 130417913 C T KLF14 Silent p.A316A 0.36 TCGA-DM-A1HB-01 7 133749097 133749097 T C EXOC4 Missense_Mutation p.V914A 0.21 tolerated(0.12) benign(0.013) TCGA-DM-A1HB-01 7 133868483 133868483 T C LRGUK Intron 0.38 TCGA-DM-A1HB-01 7 134127419 134127419 A - AKR1B1 3'UTR 0.29 TCGA-DM-A1HB-01 7 134925303 134925304 - C STRA8 Frame_Shift_Ins p.H33Pfs*2 0.25 TCGA-DM-A1HB-01 7 138601712 138601712 C T KIAA1549 Missense_Mutation p.S887N 0.44 tolerated(0.86) benign(0.001) TCGA-DM-A1HB-01 7 139706971 139706971 G A TBXAS1 Silent p.P452P 0.34 TCGA-DM-A1HB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-DM-A1HB-01 7 141414156 141414156 A - WEE2 Frame_Shift_Del p.K165Nfs*12 0.26 TCGA-DM-A1HB-01 7 141536260 141536260 C T PRSS37 Missense_Mutation p.V215I 0.34 tolerated(0.63) benign(0.228) TCGA-DM-A1HB-01 7 14733744 14733744 C A DGKB Nonsense_Mutation p.G223* 0.18 TCGA-DM-A1HB-01 7 148427228 148427228 G A CUL1 Missense_Mutation p.R5Q 0.47 tolerated(0.13) benign(0.057) TCGA-DM-A1HB-01 7 148526860 148526860 T C EZH2 Silent p.E148E 0.34 TCGA-DM-A1HB-01 7 149486332 149486332 C T SSPO RNA 0.39 TCGA-DM-A1HB-01 7 150716243 150716243 G A ATG9B Silent p.R394R 0.35 TCGA-DM-A1HB-01 7 150761764 150761764 G - SLC4A2 Frame_Shift_Del p.E125Rfs*120 0.25 TCGA-DM-A1HB-01 7 150934710 150934710 G A CHPF2 Missense_Mutation p.R421H 0.27 tolerated(0.54) benign(0.321) TCGA-DM-A1HB-01 7 151064098 151064098 T G NUB1 Missense_Mutation p.F316V 0.36 tolerated(0.33) possibly_damaging(0.561) TCGA-DM-A1HB-01 7 154585889 154585889 G A DPP6 Missense_Mutation p.A413T 0.42 tolerated(0.25) possibly_damaging(0.592) TCGA-DM-A1HB-01 7 155599528 155599528 C T SHH Intron 0.35 TCGA-DM-A1HB-01 7 158896518 158896518 T C VIPR2 Missense_Mutation p.D96G 0.33 deleterious(0.04) benign(0.186) TCGA-DM-A1HB-01 7 1997330 1997330 G A MAD1L1 Silent p.G510G 0.36 TCGA-DM-A1HB-01 7 21639564 21639564 T - DNAH11 Frame_Shift_Del p.Q945Kfs*4 0.24 TCGA-DM-A1HB-01 7 21932150 21932150 A G DNAH11 Silent p.A4212A 0.26 TCGA-DM-A1HB-01 7 21940751 21940751 A G DNAH11 Missense_Mutation p.E4484G 0.36 benign(0.343) TCGA-DM-A1HB-01 7 23307558 23307558 C T GPNMB Missense_Mutation p.P403S 0.34 tolerated(0.8) benign(0.036) TCGA-DM-A1HB-01 7 26232932 26232934 GTA - HNRNPA2B1 In_Frame_Del p.Y313del 0.25 TCGA-DM-A1HB-01 7 2771168 2771168 T C GNA12 Missense_Mutation p.R265G 0.34 deleterious(0.03) probably_damaging(0.988) TCGA-DM-A1HB-01 7 27824863 27824863 C A TAX1BP1 Missense_Mutation p.H232N 0.38 tolerated(0.09) benign(0.063) TCGA-DM-A1HB-01 7 30673526 30673526 A C GARS 3'UTR 0.56 TCGA-DM-A1HB-01 7 30825417 30825417 C - FAM188B Frame_Shift_Del p.P159Rfs*17 0.24 TCGA-DM-A1HB-01 7 31102855 31102855 G A ADCYAP1R1 5'UTR 0.42 TCGA-DM-A1HB-01 7 37780323 37780323 C A GPR141 Missense_Mutation p.L110M 0.40 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 7 37947159 37947159 A T SFRP4 Silent p.P321P 0.03 TCGA-DM-A1HB-01 7 4002355 4002355 G A SDK1 Missense_Mutation p.R434Q 0.37 deleterious(0.02) probably_damaging(0.945) TCGA-DM-A1HB-01 7 4304846 4304846 C T SDK1 Missense_Mutation p.R2158C 0.24 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 7 43540317 43540317 C T HECW1 Missense_Mutation p.R1153W 0.31 deleterious(0) probably_damaging(0.992) TCGA-DM-A1HB-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.27 TCGA-DM-A1HB-01 7 44609493 44609493 G A DDX56 Silent p.R378R 0.27 TCGA-DM-A1HB-01 7 45662341 45662341 C T ADCY1 Missense_Mutation p.T340M 0.42 deleterious(0.04) probably_damaging(0.99) TCGA-DM-A1HB-01 7 47894496 47894496 C T PKD1L1 Missense_Mutation p.V1615I 0.34 tolerated(0.45) benign(0.089) TCGA-DM-A1HB-01 7 4841484 4841484 G - RADIL Frame_Shift_Del p.P881Lfs*110 0.24 TCGA-DM-A1HB-01 7 50513595 50513595 C G FIGNL1 Missense_Mutation p.S464T 0.44 deleterious(0) probably_damaging(0.981) TCGA-DM-A1HB-01 7 56184021 56184021 G A NUPR1L 5'UTR 0.38 TCGA-DM-A1HB-01 7 6057644 6057644 A T AIMP2 Missense_Mutation p.Y181F 0.26 tolerated(0.53) benign(0.028) TCGA-DM-A1HB-01 7 63774479 63774479 G T ZNF736 5'UTR 0.34 TCGA-DM-A1HB-01 7 6548675 6548675 G A GRID2IP Missense_Mutation p.R681C 0.38 deleterious(0) possibly_damaging(0.908) TCGA-DM-A1HB-01 7 66582515 66582515 T C TYW1 Silent p.S536S 0.34 TCGA-DM-A1HB-01 7 6730759 6730759 T C ZNF12 Missense_Mutation p.Y605C 0.29 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 7 72717849 72717849 C T NSUN5 Silent p.A373A 0.40 TCGA-DM-A1HB-01 7 73249093 73249093 G A WBSCR27 Nonsense_Mutation p.R240* 0.30 TCGA-DM-A1HB-01 7 74114689 74114689 C T GTF2I Silent p.P162P 0.39 TCGA-DM-A1HB-01 7 82579126 82579126 G T PCLO Missense_Mutation p.P3593Q 0.31 unknown(0) TCGA-DM-A1HB-01 7 82595805 82595805 T C PCLO Splice_Site p.X1101_splice 0.33 TCGA-DM-A1HB-01 7 87229457 87229459 TTC - ABCB1 In_Frame_Del p.K14del 0.32 TCGA-DM-A1HB-01 7 91763706 91763706 A T CYP51A1 5'UTR 0.36 TCGA-DM-A1HB-01 7 91793028 91793028 T C LRRD1 Missense_Mutation p.N497D 0.39 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 7 94167166 94167166 T G CASD1 Missense_Mutation p.I409S 0.40 deleterious(0) probably_damaging(0.976) TCGA-DM-A1HB-01 7 97363098 97363098 C T TAC1 Nonsense_Mutation p.Q63* 0.35 TCGA-DM-A1HB-01 7 97488688 97488688 G T ASNS Silent p.S170S 0.34 TCGA-DM-A1HB-01 7 99017029 99017029 T C BUD31 Missense_Mutation p.C134R 0.30 deleterious(0) possibly_damaging(0.464) TCGA-DM-A1HB-01 7 99818692 99818692 C T PVRIG Missense_Mutation p.R267W 0.31 deleterious(0.01) benign(0) TCGA-DM-A1HB-01 8 102661654 102661654 T G GRHL2 Missense_Mutation p.V542G 0.28 deleterious(0) probably_damaging(0.955) TCGA-DM-A1HB-01 8 10468138 10468138 A C RP1L1 Missense_Mutation p.L1157R 0.35 probably_damaging(0.953) TCGA-DM-A1HB-01 8 10623187 10623187 C T PINX1 Silent p.E237E 0.38 TCGA-DM-A1HB-01 8 106801119 106801119 A G ZFPM2 Missense_Mutation p.M236V 0.20 deleterious(0) probably_damaging(0.958) TCGA-DM-A1HB-01 8 110255493 110255493 A - NUDCD1 Frame_Shift_Del p.F499Lfs*41 0.19 TCGA-DM-A1HB-01 8 110980441 110980441 G A KCNV1 Missense_Mutation p.T460I 0.33 tolerated(0.27) benign(0.099) TCGA-DM-A1HB-01 8 116616773 116616773 C T TRPS1 Missense_Mutation p.V475M 0.40 tolerated_low_confidence(0.12) benign(0.002) TCGA-DM-A1HB-01 8 117874077 117874077 T C RAD21 Intron 0.28 TCGA-DM-A1HB-01 8 121170399 121170399 T C COL14A1 Missense_Mutation p.V40A 0.34 tolerated(0.09) possibly_damaging(0.491) TCGA-DM-A1HB-01 8 123964520 123964520 A C ZHX2 Missense_Mutation p.K257T 0.38 tolerated(0.08) probably_damaging(0.999) TCGA-DM-A1HB-01 8 123964798 123964798 G A ZHX2 Missense_Mutation p.A350T 0.43 tolerated(0.21) benign(0.053) TCGA-DM-A1HB-01 8 124266729 124266729 A G ZHX1 Silent p.N486N 0.04 TCGA-DM-A1HB-01 8 124710739 124710739 G T ANXA13 Missense_Mutation p.L124I 0.31 deleterious(0) possibly_damaging(0.664) TCGA-DM-A1HB-01 8 130874512 130874512 G A FAM49B Silent p.G88G 0.28 TCGA-DM-A1HB-01 8 133811053 133811053 C T PHF20L1 Missense_Mutation p.R126C 0.39 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 8 134478196 134478196 C T ST3GAL1 Silent p.S148S 0.41 TCGA-DM-A1HB-01 8 139647291 139647291 G T COL22A1 Missense_Mutation p.P1191T 0.33 unknown(0) TCGA-DM-A1HB-01 8 141567305 141567305 C T AGO2 Silent p.T303T 0.43 TCGA-DM-A1HB-01 8 143545819 143545819 C T BAI1 Missense_Mutation p.A87V 0.45 tolerated(0.18) possibly_damaging(0.483) TCGA-DM-A1HB-01 8 144391565 144391565 A - TOP1MT 3'UTR 0.31 TCGA-DM-A1HB-01 8 144620718 144620718 T C ZC3H3 Silent p.P273P 0.38 TCGA-DM-A1HB-01 8 145027964 145027964 T G PLEC 5'Flank 0.38 TCGA-DM-A1HB-01 8 145110778 145110778 C T OPLAH Missense_Mutation p.V721M 0.38 tolerated(0.06) possibly_damaging(0.84) TCGA-DM-A1HB-01 8 145533171 145533171 A G HSF1 Missense_Mutation p.Q86R 0.32 deleterious(0.03) possibly_damaging(0.571) TCGA-DM-A1HB-01 8 145677931 145677931 G A CYHR1 Missense_Mutation p.R170C 0.58 tolerated(0.15) probably_damaging(0.998) TCGA-DM-A1HB-01 8 145697782 145697782 T C KIFC2 Missense_Mutation p.V549A 0.44 deleterious(0.03) probably_damaging(0.987) TCGA-DM-A1HB-01 8 145722575 145722575 G A PPP1R16A 5'UTR 0.30 TCGA-DM-A1HB-01 8 17813041 17813041 G A PCM1 Missense_Mutation p.A451T 0.42 tolerated(0.48) benign(0.001) TCGA-DM-A1HB-01 8 17869234 17869234 T C PCM1 Silent p.N1803N 0.34 TCGA-DM-A1HB-01 8 18080827 18080828 - A NAT1 3'UTR 0.30 TCGA-DM-A1HB-01 8 1998971 1998971 G A MYOM2 Missense_Mutation p.E31K 0.49 deleterious(0.01) benign(0.168) TCGA-DM-A1HB-01 8 21883207 21883207 T G NPM2 Missense_Mutation p.L65R 0.30 deleterious(0) possibly_damaging(0.843) TCGA-DM-A1HB-01 8 22069323 22069323 C T BMP1 3'UTR 0.43 TCGA-DM-A1HB-01 8 22458655 22458655 C - C8orf58 Frame_Shift_Del p.A103Pfs*3 0.08 TCGA-DM-A1HB-01 8 23155605 23155605 T - LOXL2 Frame_Shift_Del p.K759Sfs*9 0.21 TCGA-DM-A1HB-01 8 23301392 23301392 T C ENTPD4 Missense_Mutation p.H213R 0.31 deleterious(0.01) possibly_damaging(0.873) TCGA-DM-A1HB-01 8 24771716 24771716 G A NEFM Missense_Mutation p.R137Q 0.45 deleterious(0.01) unknown(0) TCGA-DM-A1HB-01 8 25222157 25222157 T G DOCK5 Silent p.A1020A 0.44 TCGA-DM-A1HB-01 8 26217719 26217719 G A PPP2R2A Silent p.R137R 0.31 TCGA-DM-A1HB-01 8 26227952 26227952 A G PPP2R2A 3'UTR 0.30 TCGA-DM-A1HB-01 8 26627631 26627631 A G ADRA1A Intron 0.31 TCGA-DM-A1HB-01 8 26722365 26722365 A C ADRA1A Missense_Mutation p.V41G 0.39 deleterious(0) probably_damaging(0.961) TCGA-DM-A1HB-01 8 27290996 27290996 G T PTK2B Missense_Mutation p.M344I 0.33 tolerated(0.09) possibly_damaging(0.643) TCGA-DM-A1HB-01 8 27364393 27364393 T - EPHX2 Frame_Shift_Del p.L183Wfs*8 0.22 TCGA-DM-A1HB-01 8 27634434 27634434 T C ESCO2 Silent p.V203V 0.41 TCGA-DM-A1HB-01 8 27634476 27634476 T C ESCO2 Silent p.S217S 0.41 TCGA-DM-A1HB-01 8 27965480 27965480 A G ELP3 Missense_Mutation p.Y127C 0.38 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 8 28625704 28625704 G A INTS9 Nonsense_Mutation p.R646* 0.52 TCGA-DM-A1HB-01 8 30695261 30695261 T - TEX15 Frame_Shift_Del p.S2464Vfs*33 0.28 TCGA-DM-A1HB-01 8 38285901 38285901 C A FGFR1 Missense_Mutation p.E170D 0.39 tolerated(0.71) benign(0.045) TCGA-DM-A1HB-01 8 39678685 39678685 C T ADAM2 Missense_Mutation p.V117I 0.29 tolerated(0.42) benign(0.001) TCGA-DM-A1HB-01 8 42046493 42046493 C T PLAT Missense_Mutation p.C71Y 0.36 deleterious(0) probably_damaging(1) TCGA-DM-A1HB-01 8 42227445 42227445 T G POLB Silent p.A284A 0.40 TCGA-DM-A1HB-01 8 42694464 42694465 - T THAP1 Frame_Shift_Ins p.N44Kfs*3 0.23 TCGA-DM-A1HB-01 8 42958910 42958910 C A POMK Silent p.S73S 0.36 TCGA-DM-A1HB-01 8 48511536 48511536 G T SPIDR Missense_Mutation p.G441V 0.45 tolerated(0.07) benign(0.002) TCGA-DM-A1HB-01 8 51449258 51449258 G A SNTG1 Silent p.S190S 0.26 TCGA-DM-A1HB-01 8 53025871 53025871 C T ST18 Missense_Mutation p.A1011T 0.33 tolerated(0.09) probably_damaging(1) TCGA-DM-A1HB-01 8 54142270 54142270 C T OPRK1 Missense_Mutation p.V244I 0.39 tolerated(0.46) benign(0.023) TCGA-DM-A1HB-01 8 55537411 55537411 T A RP1 Silent p.I323I 0.39 TCGA-DM-A1HB-01 8 56910920 56910920 G A LYN Missense_Mutation p.A356T 0.31 deleterious(0.02) possibly_damaging(0.679) TCGA-DM-A1HB-01 8 57353801 57353801 G T PENK 3'UTR 0.27 TCGA-DM-A1HB-01 8 6366291 6366291 A T ANGPT2 Intron 0.33 TCGA-DM-A1HB-01 8 6420551 6420551 C T ANGPT2 5'UTR 0.36 TCGA-DM-A1HB-01 8 65494534 65494534 G T BHLHE22 3'UTR 0.38 TCGA-DM-A1HB-01 8 65494909 65494909 C T BHLHE22 3'UTR 0.32 TCGA-DM-A1HB-01 8 68074138 68074138 T C CSPP1 Silent p.R872R 0.28 TCGA-DM-A1HB-01 8 69552624 69552624 T C C8orf34 Silent p.D373D 0.28 TCGA-DM-A1HB-01 8 87081831 87081831 C T PSKH2 Silent p.R7R 0.26 TCGA-DM-A1HB-01 8 91031161 91031161 C T DECR1 Silent p.T99T 0.33 TCGA-DM-A1HB-01 8 91643787 91643788 - A TMEM64 Frame_Shift_Ins p.C315Lfs*30 0.31 TCGA-DM-A1HB-01 8 91657363 91657363 A - TMEM64 Frame_Shift_Del p.F257Lfs*19 0.27 TCGA-DM-A1HB-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.26 TCGA-DM-A1HB-01 8 9413799 9413799 C A TNKS Missense_Mutation p.A117D 0.37 deleterious_low_confidence(0.03) unknown(0) TCGA-DM-A1HB-01 8 97247784 97247784 T C UQCRB 5'Flank 0.39 TCGA-DM-A1HB-01 8 99114974 99114974 T C HRSP12 3'UTR 0.29 TCGA-DM-A1HB-01 9 100692417 100692417 T C HEMGN Silent p.K420K 0.41 TCGA-DM-A1HB-01 9 101068538 101068538 G A GABBR2 Silent p.N698N 0.37 TCGA-DM-A1HB-01 9 103002507 103002507 T C INVS Missense_Mutation p.W261R 0.38 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 9 107331770 107331770 G T OR13C8 Missense_Mutation p.G108W 0.36 deleterious(0) probably_damaging(0.994) TCGA-DM-A1HB-01 9 107618128 107618128 G T ABCA1 Intron 0.29 TCGA-DM-A1HB-01 9 108337389 108337389 T C FKTN Missense_Mutation p.Y26H 0.40 tolerated_low_confidence(0.13) possibly_damaging(0.873) TCGA-DM-A1HB-01 9 108536155 108536155 A T TMEM38B Missense_Mutation p.M224L 0.37 tolerated(0.15) benign(0.367) TCGA-DM-A1HB-01 9 111782720 111782720 T C TMEM245 3'UTR 0.35 TCGA-DM-A1HB-01 9 113562852 113562852 C T MUSK Silent p.L732L 0.06 TCGA-DM-A1HB-01 9 114304443 114304443 A C ZNF483 Missense_Mutation p.T410P 0.32 tolerated(1) benign(0) TCGA-DM-A1HB-01 9 115336897 115336897 A G KIAA1958 Silent p.P179P 0.41 TCGA-DM-A1HB-01 9 116022776 116022776 T G SLC31A1 3'UTR 0.32 TCGA-DM-A1HB-01 9 116053844 116053844 C T PRPF4 Silent p.H491H 0.41 TCGA-DM-A1HB-01 9 117052528 117052528 C T COL27A1 Missense_Mutation p.R1429W 0.37 unknown(0) TCGA-DM-A1HB-01 9 117169036 117169036 G A DFNB31 Missense_Mutation p.S612F 0.41 deleterious(0) benign(0.126) TCGA-DM-A1HB-01 9 121929428 121929428 G A BRINP1 Silent p.H740H 0.36 TCGA-DM-A1HB-01 9 123935611 123935611 A G CNTRL Missense_Mutation p.T2170A 0.38 benign(0.014) TCGA-DM-A1HB-01 9 125140224 125140224 C A PTGS1 Silent p.V47V 0.33 TCGA-DM-A1HB-01 9 125681125 125681125 A - ZBTB26 Frame_Shift_Del p.F363Lfs*7 0.22 TCGA-DM-A1HB-01 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.19 TCGA-DM-A1HB-01 9 127214984 127214984 G A GPR144 Missense_Mutation p.R107Q 0.45 tolerated(0.59) benign(0.003) TCGA-DM-A1HB-01 9 127789128 127789128 G A SCAI Nonsense_Mutation p.Q182* 0.36 TCGA-DM-A1HB-01 9 129870980 129870980 G T ANGPTL2 Missense_Mutation p.L11I 0.43 deleterious_low_confidence(0.03) benign(0.364) TCGA-DM-A1HB-01 9 130587554 130587555 - G ENG Frame_Shift_Ins p.Y258Lfs*76 0.26 TCGA-DM-A1HB-01 9 131345102 131345102 A - SPTAN1 Frame_Shift_Del p.T595Lfs*44 0.20 TCGA-DM-A1HB-01 9 131480648 131480650 AGA - PKN3 In_Frame_Del p.K679del 0.31 TCGA-DM-A1HB-01 9 131709771 131709771 C - DOLK 5'UTR 0.29 TCGA-DM-A1HB-01 9 131870306 131870306 G A CRAT Silent p.S26S 0.40 TCGA-DM-A1HB-01 9 132934915 132934915 G - NCS1 5'UTR 0.37 TCGA-DM-A1HB-01 9 133760818 133760818 C T ABL1 Silent p.S1066S 0.18 TCGA-DM-A1HB-01 9 133942592 133942592 C T LAMC3 Missense_Mutation p.P865S 0.29 tolerated(0.12) benign(0.041) TCGA-DM-A1HB-01 9 133945184 133945184 G C LAMC3 Missense_Mutation p.D1006H 0.42 tolerated(0.12) benign(0.021) TCGA-DM-A1HB-01 9 134514093 134514093 C T RAPGEF1 Missense_Mutation p.V195M 0.36 deleterious(0.04) probably_damaging(0.918) TCGA-DM-A1HB-01 9 135772924 135772924 T C TSC1 Missense_Mutation p.Q900R 0.37 deleterious(0.03) probably_damaging(0.946) TCGA-DM-A1HB-01 9 137313534 137313534 G A RXRA Missense_Mutation p.V265I 0.22 tolerated(0.07) benign(0.051) TCGA-DM-A1HB-01 9 138557539 138557539 A G LCN9 Intron 0.34 TCGA-DM-A1HB-01 9 138657029 138657029 C - KCNT1 Frame_Shift_Del p.R398Gfs*81 0.27 TCGA-DM-A1HB-01 9 138669193 138669193 C T KCNT1 Missense_Mutation p.H787Y 0.45 deleterious(0) probably_damaging(0.982) TCGA-DM-A1HB-01 9 139301694 139301694 G A SDCCAG3 Missense_Mutation p.P241L 0.48 tolerated(0.19) benign(0.008) TCGA-DM-A1HB-01 9 139345750 139345750 T C SEC16A Silent p.R2090R 0.05 TCGA-DM-A1HB-01 9 139401371 139401371 G A NOTCH1 Missense_Mutation p.S1233F 0.46 deleterious(0.03) benign(0.021) TCGA-DM-A1HB-01 9 139699737 139699737 T G CCDC183 Intron 0.15 TCGA-DM-A1HB-01 9 139910186 139910186 G A ABCA2 Missense_Mutation p.A1152V 0.38 deleterious(0) probably_damaging(0.999) TCGA-DM-A1HB-01 9 140128981 140128981 A G SLC34A3 Missense_Mutation p.M403V 0.27 tolerated(1) benign(0.026) TCGA-DM-A1HB-01 9 140196289 140196289 T C NRARP Missense_Mutation p.Q31R 0.42 tolerated(0.54) benign(0.018) TCGA-DM-A1HB-01 9 140329506 140329506 C T ENTPD8 Missense_Mutation p.G450R 0.37 deleterious(0) benign(0.301) TCGA-DM-A1HB-01 9 140391642 140391642 G A PNPLA7 Silent p.G670G 0.45 TCGA-DM-A1HB-01 9 15171910 15171910 T - TTC39B 3'UTR 0.50 TCGA-DM-A1HB-01 9 16436918 16436918 C T BNC2 Missense_Mutation p.R425Q 0.43 tolerated(0.11) benign(0.038) TCGA-DM-A1HB-01 9 18928209 18928209 A C FAM154A Silent p.A422A 0.34 TCGA-DM-A1HB-01 9 19082905 19082905 A G HAUS6 Missense_Mutation p.L279P 0.23 tolerated(0.07) probably_damaging(1) TCGA-DM-A1HB-01 9 21186968 21186968 T A IFNA4 Missense_Mutation p.K188M 0.33 tolerated(0.18) probably_damaging(0.916) TCGA-DM-A1HB-01 9 21970902 21970902 T C CDKN2A Silent p.S152S 0.24 TCGA-DM-A1HB-01 9 2718356 2718356 G A KCNV2 Missense_Mutation p.R206Q 0.35 deleterious(0.02) possibly_damaging(0.895) TCGA-DM-A1HB-01 9 311986 311986 C T DOCK8 Silent p.D187D 0.35 TCGA-DM-A1HB-01 9 34256963 34256963 C A KIF24 Missense_Mutation p.R881M 0.42 tolerated(0.15) possibly_damaging(0.592) TCGA-DM-A1HB-01 9 34614721 34614721 G T DCTN3 Missense_Mutation p.H133N 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-DM-A1HB-01 9 34622381 34622381 G T ARID3C Silent p.P337P 0.55 TCGA-DM-A1HB-01 9 34709846 34709846 T C CCL21 Missense_Mutation p.K39R 0.31 tolerated(0.15) benign(0.438) TCGA-DM-A1HB-01 9 34726077 34726077 T C FAM205A Missense_Mutation p.H387R 0.32 deleterious(0.01) benign(0.266) TCGA-DM-A1HB-01 9 35044429 35044429 G A C9orf131 Silent p.K601K 0.40 TCGA-DM-A1HB-01 9 35396849 35396849 A G UNC13B Missense_Mutation p.Q1067R 0.39 deleterious(0) benign(0.315) TCGA-DM-A1HB-01 9 35548266 35548266 G - RUSC2 Frame_Shift_Del p.A585Pfs*62 0.26 TCGA-DM-A1HB-01 9 35752016 35752016 G - RGP1 Frame_Shift_Del p.G277Vfs*8 0.28 TCGA-DM-A1HB-01 9 35853508 35853508 C T TMEM8B Missense_Mutation p.R364C 0.41 deleterious(0) probably_damaging(0.963) TCGA-DM-A1HB-01 9 35957190 35957190 C A OR2S2 Missense_Mutation p.K302N 0.38 deleterious(0.01) benign(0.162) TCGA-DM-A1HB-01 9 37518143 37518143 C T FBXO10 Silent p.L831L 0.47 TCGA-DM-A1HB-01 9 37745384 37745384 A - FRMPD1 Frame_Shift_Del p.N1120Mfs*38 0.29 TCGA-DM-A1HB-01 9 37762039 37762039 G T TRMT10B Missense_Mutation p.Q37H 0.33 tolerated(0.06) benign(0.015) TCGA-DM-A1HB-01 9 43625115 43625115 T - SPATA31A6 Frame_Shift_Del p.N1191Tfs*16 0.11 TCGA-DM-A1HB-01 9 4664349 4664349 T - PPAPDC2 3'UTR 0.27 TCGA-DM-A1HB-01 9 6329993 6329993 T C TPD52L3 3'UTR 0.34 TCGA-DM-A1HB-01 9 6532881 6532881 T C GLDC 3'UTR 0.50 TCGA-DM-A1HB-01 9 6554673 6554673 C T GLDC Missense_Mutation p.G771R 0.40 deleterious(0) probably_damaging(0.95) TCGA-DM-A1HB-01 9 69200390 69200390 G A FOXD4L6 Missense_Mutation p.A408V 0.17 deleterious_low_confidence(0.04) benign(0.001) TCGA-DM-A1HB-01 9 70919300 70919300 C T FOXD4L3 3'UTR 0.29 TCGA-DM-A1HB-01 9 712713 712713 C T KANK1 Silent p.G649G 0.32 TCGA-DM-A1HB-01 9 73002714 73002714 T - KLF9 Frame_Shift_Del p.K238Rfs*32 0.30 TCGA-DM-A1HB-01 9 77613613 77613613 G A C9orf41 Nonsense_Mutation p.R271* 0.34 TCGA-DM-A1HB-01 9 78953298 78953298 A G PCSK5 Missense_Mutation p.H1607R 0.39 tolerated(0.12) benign(0.276) TCGA-DM-A1HB-01 9 82333771 82333771 C T TLE4 Missense_Mutation p.A492V 0.41 deleterious(0) possibly_damaging(0.896) TCGA-DM-A1HB-01 9 8317772 8317772 C T PTPRD 3'UTR 0.28 TCGA-DM-A1HB-01 9 85950459 85950459 T - FRMD3 Frame_Shift_Del p.I190* 0.24 TCGA-DM-A1HB-01 9 89771571 89771571 C T C9orf170 Silent p.V84V 0.35 TCGA-DM-A1HB-01 9 95166869 95166869 C T OGN 5'Flank 0.37 TCGA-DM-A1HB-01 9 977040 977040 C T DMRT3 Silent p.G13G 0.33 TCGA-DM-A1HB-01 X 100118529 100118529 A G NOX1 Missense_Mutation p.L66P 0.05 deleterious(0) probably_damaging(0.991) TCGA-DM-A1HB-01 X 100667851 100667851 A G HNRNPH2 Missense_Mutation p.H292R 0.63 tolerated(0.07) benign(0.069) TCGA-DM-A1HB-01 X 100880684 100880684 C T ARMCX3 Missense_Mutation p.H239Y 0.59 deleterious(0.04) probably_damaging(0.932) TCGA-DM-A1HB-01 X 10107475 10107475 A G WWC3 Missense_Mutation p.Y1036C 0.67 tolerated(0.18) possibly_damaging(0.649) TCGA-DM-A1HB-01 X 10181910 10181910 A G CLCN4 Missense_Mutation p.E589G 0.60 deleterious(0) possibly_damaging(0.703) TCGA-DM-A1HB-01 X 102979019 102979019 G A GLRA4 Silent p.L161L 0.73 TCGA-DM-A1HB-01 X 106173306 106173307 - C CLDN2 3'UTR 0.68 TCGA-DM-A1HB-01 X 109694016 109694016 C T RGAG1 Silent p.D57D 0.09 TCGA-DM-A1HB-01 X 109764803 109764803 G A TDGF1P3 RNA 0.07 TCGA-DM-A1HB-01 X 120008764 120008764 G A CT47B1 Missense_Mutation p.A254V 0.79 deleterious(0.05) unknown(0) TCGA-DM-A1HB-01 X 120181496 120181496 A G GLUD2 5'UTR 0.75 TCGA-DM-A1HB-01 X 129283533 129283533 G T AIFM1 Missense_Mutation p.T87N 0.47 deleterious(0.04) benign(0.07) TCGA-DM-A1HB-01 X 130409960 130409960 A G IGSF1 Silent p.S962S 0.87 TCGA-DM-A1HB-01 X 134167285 134167285 C - FAM127A 3'UTR 0.40 TCGA-DM-A1HB-01 X 134993766 134993766 G T SAGE1 Missense_Mutation p.E725D 0.70 deleterious(0.02) possibly_damaging(0.89) TCGA-DM-A1HB-01 X 135736558 135736558 G A CD40LG Silent p.T105T 0.72 TCGA-DM-A1HB-01 X 139038885 139038886 - T CXorf66 Frame_Shift_Ins p.G86Rfs*8 0.41 TCGA-DM-A1HB-01 X 1401368 1401368 A C CSF2RA 5'Flank 0.50 TCGA-DM-A1HB-01 X 148568500 148568500 G C IDS Missense_Mutation p.P168R 0.61 tolerated(0.06) benign(0.257) TCGA-DM-A1HB-01 X 149639325 149639327 CAG - MAMLD1 In_Frame_Del p.Q477del 0.52 TCGA-DM-A1HB-01 X 151303989 151303989 T C MAGEA10 Missense_Mutation p.E35G 0.60 deleterious(0.03) benign(0.002) TCGA-DM-A1HB-01 X 153032590 153032590 A G PLXNB3 Missense_Mutation p.D126G 0.08 tolerated(0.06) possibly_damaging(0.477) TCGA-DM-A1HB-01 X 153631030 153631030 G - DNASE1L1 3'UTR 0.41 TCGA-DM-A1HB-01 X 153944338 153944338 A G GAB3 Silent p.S113S 0.70 TCGA-DM-A1HB-01 X 20029077 20029077 A G MAP7D2 Silent p.G722G 0.49 TCGA-DM-A1HB-01 X 21675046 21675046 C - KLHL34 Frame_Shift_Del p.R288Afs*7 0.46 TCGA-DM-A1HB-01 X 21755769 21755769 G A SMPX Missense_Mutation p.A60V 0.67 tolerated_low_confidence(0.08) benign(0.061) TCGA-DM-A1HB-01 X 22112163 22112163 C A PHEX Silent p.S265S 0.77 TCGA-DM-A1HB-01 X 23721962 23721962 T C ACOT9 3'UTR 0.08 TCGA-DM-A1HB-01 X 27765750 27765750 C T DCAF8L2 Silent p.S246S 0.64 TCGA-DM-A1HB-01 X 34148228 34148228 T - FAM47A Frame_Shift_Del p.K723Sfs*22 0.41 TCGA-DM-A1HB-01 X 34148968 34148968 G T FAM47A Silent p.S476S 0.71 TCGA-DM-A1HB-01 X 37535123 37535123 T G LANCL3 3'UTR 0.63 TCGA-DM-A1HB-01 X 47070515 47070515 T G UBA1 Silent p.A785A 0.09 TCGA-DM-A1HB-01 X 49107801 49107801 G A FOXP3 Silent p.G430G 0.67 TCGA-DM-A1HB-01 X 50213576 50213576 T C DGKK RNA 0.74 TCGA-DM-A1HB-01 X 50345774 50345775 - G SHROOM4 Frame_Shift_Ins p.G1268Rfs*28 0.41 TCGA-DM-A1HB-01 X 53285177 53285177 G - IQSEC2 Frame_Shift_Del p.Y269Tfs*3 0.37 TCGA-DM-A1HB-01 X 53654400 53654400 T C HUWE1 Missense_Mutation p.T484A 0.05 benign(0.042) TCGA-DM-A1HB-01 X 57618381 57618381 T - ZXDB 5'UTR 0.66 TCGA-DM-A1HB-01 X 70345299 70345299 C A MED12 Silent p.T775T 0.14 TCGA-DM-A1HB-01 X 73962188 73962188 G A KIAA2022 Missense_Mutation p.A735V 0.44 tolerated(0.13) benign(0.444) TCGA-DM-A1HB-01 X 77913767 77913767 G A ZCCHC5 Silent p.L51L 0.77 TCGA-DM-A1HB-01 X 77913779 77913779 T C ZCCHC5 Missense_Mutation p.K47E 0.15 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-DM-A1HB-01 X 90692975 90692975 T C PABPC5 3'UTR 0.07 TCGA-DM-A1HB-01 X 92964568 92964569 - A FAM133A Frame_Shift_Ins p.T53Nfs*8 0.60 TCGA-DM-A1HB-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.57 TCGA-DM-A280-01 10 114920412 114920412 C T TCF7L2 Silent p.F451F 0.12 TCGA-DM-A280-01 10 30915077 30915077 G A LYZL2 Silent p.R131R 0.09 TCGA-DM-A280-01 10 77542749 77542749 T C C10orf11 Missense_Mutation p.S6P 0.10 deleterious(0.01) benign(0.444) TCGA-DM-A280-01 10 91483844 91483844 C A KIF20B Silent p.R616R 0.19 TCGA-DM-A280-01 11 123908944 123908944 A C OR10G7 Silent p.L255L 0.17 TCGA-DM-A280-01 11 131781373 131781373 A G NTM 5'UTR 0.09 TCGA-DM-A280-01 11 30032395 30032395 A T KCNA4 Missense_Mutation p.Y611N 0.18 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-DM-A280-01 11 49168250 49168250 C T FOLH1 3'UTR 0.12 TCGA-DM-A280-01 11 55433337 55433337 A G OR4C6 Missense_Mutation p.H232R 0.08 tolerated_low_confidence(1) benign(0.006) TCGA-DM-A280-01 11 64898828 64898828 C A SYVN1 Silent p.L225L 0.25 TCGA-DM-A280-01 11 70333394 70333394 C T SHANK2 Missense_Mutation p.V1003I 0.19 tolerated(0.13) benign(0.184) TCGA-DM-A280-01 11 92624131 92624131 C A FAT3 Missense_Mutation p.S4541Y 0.24 possibly_damaging(0.759) TCGA-DM-A280-01 11 94696595 94696595 C T CWC15 Silent p.L214L 0.12 TCGA-DM-A280-01 12 108090310 108090310 C T PWP1 Missense_Mutation p.P188S 0.20 deleterious(0.01) probably_damaging(0.985) TCGA-DM-A280-01 12 109547637 109547637 C T UNG Missense_Mutation p.R269W 0.16 deleterious(0) probably_damaging(0.998) TCGA-DM-A280-01 12 120168334 120168334 T C CIT Missense_Mutation p.E1151G 0.09 deleterious(0.02) benign(0.219) TCGA-DM-A280-01 12 12397204 12397204 A G LRP6 Silent p.P147P 0.08 TCGA-DM-A280-01 12 21172239 21172239 A C SLCO1B7 Missense_Mutation p.K48T 0.11 deleterious(0) probably_damaging(0.913) TCGA-DM-A280-01 12 21593319 21593319 A C PYROXD1 Silent p.P34P 0.11 TCGA-DM-A280-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.21 deleterious(0.03) possibly_damaging(0.644) TCGA-DM-A280-01 12 47471243 47471243 C G AMIGO2 Missense_Mutation p.D515H 0.12 deleterious(0) probably_damaging(0.999) TCGA-DM-A280-01 12 56234613 56234613 G A MMP19 Missense_Mutation p.L120F 0.20 deleterious(0.03) probably_damaging(0.973) TCGA-DM-A280-01 12 57919914 57919914 G A MBD6 Missense_Mutation p.R388H 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-DM-A280-01 12 6182849 6182849 G A VWF Silent p.T311T 0.09 TCGA-DM-A280-01 12 86198901 86198901 A T RASSF9 Missense_Mutation p.I296N 0.08 tolerated(0.07) benign(0.056) TCGA-DM-A280-01 12 97157995 97157995 T G C12orf55 Missense_Mutation p.L2703V 0.15 tolerated(0.32) benign(0.001) TCGA-DM-A280-01 12 98989598 98989598 C T SLC25A3 Intron 0.27 TCGA-DM-A280-01 13 103343183 103343183 C T METTL21C Missense_Mutation p.G88R 0.14 deleterious(0) probably_damaging(0.996) TCGA-DM-A280-01 13 21557725 21557725 C T LATS2 Missense_Mutation p.R707Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-DM-A280-01 13 36385080 36385080 T G DCLK1 Missense_Mutation p.K527T 0.11 deleterious(0.03) possibly_damaging(0.607) TCGA-DM-A280-01 14 33292094 33292094 G A AKAP6 Missense_Mutation p.S1692N 0.27 deleterious(0) probably_damaging(0.993) TCGA-DM-A280-01 14 42356534 42356534 A C LRFN5 Missense_Mutation p.S236R 0.19 deleterious(0) probably_damaging(0.98) TCGA-DM-A280-01 14 91044639 91044639 G A TTC7B Silent p.I707I 0.18 TCGA-DM-A280-01 14 94770860 94770860 C T SERPINA6 Silent p.T371T 0.30 TCGA-DM-A280-01 15 55621921 55621922 - T PIGB Frame_Shift_Ins p.C177Lfs*79 0.33 TCGA-DM-A280-01 15 64275773 64275773 G A DAPK2 Silent p.D91D 0.38 TCGA-DM-A280-01 15 67473779 67473779 C T SMAD3 Missense_Mutation p.R287W 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A280-01 16 11781821 11781821 T C TXNDC11 Missense_Mutation p.D682G 0.08 deleterious(0.01) probably_damaging(0.973) TCGA-DM-A280-01 16 1493851 1493851 G A CCDC154 Missense_Mutation p.T57M 0.16 tolerated(0.05) probably_damaging(0.939) TCGA-DM-A280-01 16 1869923 1869923 T C HAGH Missense_Mutation p.K136R 0.30 tolerated(0.21) benign(0.013) TCGA-DM-A280-01 16 27454346 27454346 G A IL21R Missense_Mutation p.R139H 0.16 tolerated(0.14) benign(0.03) TCGA-DM-A280-01 16 3297232 3297232 C T MEFV Silent p.A457A 0.14 TCGA-DM-A280-01 16 46771756 46771756 A G MYLK3 Missense_Mutation p.S290P 0.12 tolerated(0.24) benign(0.006) TCGA-DM-A280-01 16 53698780 53698780 A G RPGRIP1L Splice_Site p.X415_splice 0.21 TCGA-DM-A280-01 16 57155103 57155103 G A CPNE2 Silent p.P260P 0.16 TCGA-DM-A280-01 17 10432103 10432103 C A MYH2 Silent p.L1216L 0.18 TCGA-DM-A280-01 17 26671489 26671489 C T TNFAIP1 Missense_Mutation p.R272C 0.31 deleterious(0.04) possibly_damaging(0.776) TCGA-DM-A280-01 17 26856182 26856182 C A FOXN1 Missense_Mutation p.A257E 0.19 deleterious(0) possibly_damaging(0.603) TCGA-DM-A280-01 17 39471934 39471934 C T KRTAP17-1 5'UTR 0.42 TCGA-DM-A280-01 17 48597040 48597040 T C MYCBPAP Silent p.L313L 0.09 TCGA-DM-A280-01 17 60484505 60484505 C T EFCAB3 Silent p.L319L 0.39 TCGA-DM-A280-01 18 14543031 14543031 C T POTEC Missense_Mutation p.G39S 0.09 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-DM-A280-01 18 24127079 24127079 G A KCTD1 Intron 0.19 TCGA-DM-A280-01 18 45368211 45368211 G T SMAD2 Nonsense_Mutation p.S464* 0.44 TCGA-DM-A280-01 18 77893603 77893603 G T ADNP2 Nonsense_Mutation p.E103* 0.18 TCGA-DM-A280-01 18 8825125 8825125 C T SOGA2 Missense_Mutation p.T1206M 0.16 tolerated(0.26) benign(0.004) TCGA-DM-A280-01 19 11143985 11143985 G A SMARCA4 Missense_Mutation p.R1189Q 0.21 probably_damaging(0.999) TCGA-DM-A280-01 19 16532163 16532163 G A EPS15L1 Missense_Mutation p.S306L 0.16 deleterious(0) probably_damaging(0.983) TCGA-DM-A280-01 19 21117770 21117770 A G ZNF85 Missense_Mutation p.K49R 0.08 deleterious(0) probably_damaging(0.91) TCGA-DM-A280-01 19 22154621 22154621 A C ZNF208 Missense_Mutation p.L1072R 0.12 deleterious(0) probably_damaging(0.995) TCGA-DM-A280-01 19 23926462 23926462 A C ZNF681 Silent p.T630T 0.11 TCGA-DM-A280-01 19 39002983 39002983 G A RYR1 Missense_Mutation p.R3111Q 0.18 benign(0.029) TCGA-DM-A280-01 19 44831582 44831582 G A ZNF112 3'UTR 0.15 TCGA-DM-A280-01 19 48221817 48221817 C A EHD2 Silent p.I152I 0.22 TCGA-DM-A280-01 19 53013958 53013958 A C ZNF578 Missense_Mutation p.K108N 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-DM-A280-01 19 53887443 53887443 T G ZNF525 3'UTR 0.18 TCGA-DM-A280-01 19 55869754 55869754 G A FAM71E2 Missense_Mutation p.R828W 0.29 deleterious(0) benign(0.001) TCGA-DM-A280-01 19 57335692 57335692 G A PEG3 Missense_Mutation p.P111L 0.18 deleterious(0) probably_damaging(0.967) TCGA-DM-A280-01 1 152191466 152191466 C T HRNR Missense_Mutation p.R880H 0.14 unknown(0) TCGA-DM-A280-01 1 1684396 1684396 G A NADK Missense_Mutation p.R575W 0.11 deleterious(0) probably_damaging(0.999) TCGA-DM-A280-01 1 170699424 170699424 G A PRRX1 Intron 0.12 TCGA-DM-A280-01 1 185964168 185964168 G T HMCN1 Missense_Mutation p.A1243S 0.24 probably_damaging(0.996) TCGA-DM-A280-01 1 186151319 186151319 T A HMCN1 Missense_Mutation p.N5438K 0.13 benign(0.002) TCGA-DM-A280-01 1 196715067 196715067 T G CFH Missense_Mutation p.L1144R 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-DM-A280-01 1 218609429 218609429 T C TGFB2 Missense_Mutation p.L319P 0.19 deleterious(0.01) probably_damaging(0.97) TCGA-DM-A280-01 1 220440223 220440223 T C RAB3GAP2 Intron 0.19 TCGA-DM-A280-01 1 220826690 220826690 C T MARK1 Missense_Mutation p.R662C 0.14 deleterious(0) probably_damaging(0.972) TCGA-DM-A280-01 1 2252794 2252794 C T MORN1 3'UTR 0.28 TCGA-DM-A280-01 1 238050695 238050695 A C ZP4 Silent p.T240T 0.08 TCGA-DM-A280-01 1 36933480 36933480 C A CSF3R Missense_Mutation p.A603S 0.11 tolerated(1) benign(0.002) TCGA-DM-A280-01 1 47157585 47157585 A C EFCAB14 Missense_Mutation p.L202V 0.11 tolerated(0.09) possibly_damaging(0.873) TCGA-DM-A280-01 1 57480833 57480833 G T DAB1 Silent p.T389T 0.17 TCGA-DM-A280-01 1 64644352 64644352 C A ROR1 Silent p.S876S 0.15 TCGA-DM-A280-01 1 67208861 67208861 A G SGIP1 3'UTR 0.08 TCGA-DM-A280-01 1 79387419 79387419 G A ELTD1 Missense_Mutation p.T379I 0.27 deleterious(0.01) possibly_damaging(0.827) TCGA-DM-A280-01 20 37356246 37356246 G A SLC32A1 Missense_Mutation p.R181H 0.26 deleterious(0) probably_damaging(0.99) TCGA-DM-A280-01 20 58456043 58456043 G T SYCP2 Missense_Mutation p.S917Y 0.15 tolerated(0.08) possibly_damaging(0.861) TCGA-DM-A280-01 20 60885792 60885793 CC T LAMA5 Frame_Shift_Del p.A3459Qfs*25 0.31 TCGA-DM-A280-01 22 24460595 24460595 A G CABIN1 Missense_Mutation p.D661G 0.09 tolerated(0.2) benign(0.038) TCGA-DM-A280-01 22 35806803 35806803 G A MCM5 Silent p.K273K 0.14 TCGA-DM-A280-01 22 36872795 36872795 G A TXN2 Silent p.L124L 0.21 TCGA-DM-A280-01 22 46614176 46614176 C T PPARA Missense_Mutation p.T129M 0.19 deleterious(0) probably_damaging(1) TCGA-DM-A280-01 2 116598330 116598330 A C DPP10 Missense_Mutation p.K733N 0.16 tolerated(0.27) benign(0.006) TCGA-DM-A280-01 2 11758500 11758500 G A GREB1 Missense_Mutation p.A1167T 0.19 tolerated(0.45) benign(0.072) TCGA-DM-A280-01 2 132291046 132291046 C G CCDC74A 3'UTR 0.22 TCGA-DM-A280-01 2 152473895 152473895 G A NEB Nonsense_Mutation p.R3722* 0.18 TCGA-DM-A280-01 2 168100750 168100750 C G XIRP2 Missense_Mutation p.H950D 0.23 possibly_damaging(0.782) TCGA-DM-A280-01 2 179414389 179414389 C T TTN Missense_Mutation p.G30687D 0.33 TCGA-DM-A280-01 2 179426946 179426946 A G TTN Silent p.T27971T 0.10 TCGA-DM-A280-01 2 179648841 179648841 C T TTN Missense_Mutation p.V911I 0.26 TCGA-DM-A280-01 2 183641929 183641929 A T DNAJC10 3'UTR 0.31 TCGA-DM-A280-01 2 212251755 212251755 A C ERBB4 Missense_Mutation p.F1102V 0.08 tolerated(0.3) benign(0.004) TCGA-DM-A280-01 2 212285302 212285302 T C ERBB4 Missense_Mutation p.D1000G 0.09 deleterious(0.02) possibly_damaging(0.594) TCGA-DM-A280-01 2 219855599 219855599 C T CRYBA2 Missense_Mutation p.G141S 0.33 deleterious(0.02) benign(0.413) TCGA-DM-A280-01 2 226447601 226447601 G T NYAP2 Missense_Mutation p.A490S 0.22 tolerated(1) benign(0.077) TCGA-DM-A280-01 2 233323451 233323451 C T ALPI Silent p.S431S 0.27 TCGA-DM-A280-01 2 24107710 24107710 G A ATAD2B Nonsense_Mutation p.R237* 0.19 TCGA-DM-A280-01 2 43927429 43927430 - A PLEKHH2 Frame_Shift_Ins p.N445Kfs*22 0.20 TCGA-DM-A280-01 2 5838431 5838431 A G SOX11 3'UTR 0.15 TCGA-DM-A280-01 2 95542400 95542400 G A TEKT4 Missense_Mutation p.M398I 0.23 tolerated(0.1) benign(0.189) TCGA-DM-A280-01 3 114069502 114069502 G A ZBTB20 Missense_Mutation p.L475F 0.14 deleterious(0.02) benign(0.133) TCGA-DM-A280-01 3 138724967 138724967 C T PRR23A Silent p.P48P 0.23 TCGA-DM-A280-01 3 170078504 170078504 G A SKIL Missense_Mutation p.V129I 0.22 tolerated(0.44) benign(0.007) TCGA-DM-A280-01 3 178916930 178916930 G T PIK3CA Missense_Mutation p.G106V 0.13 deleterious(0.01) probably_damaging(1) TCGA-DM-A280-01 3 186954284 186954284 C T MASP1 Missense_Mutation p.G459S 0.19 deleterious(0) probably_damaging(0.998) TCGA-DM-A280-01 3 27436097 27436097 T G SLC4A7 Missense_Mutation p.K1001T 0.15 deleterious(0) probably_damaging(0.992) TCGA-DM-A280-01 3 51994561 51994561 A G PCBP4 Missense_Mutation p.I79T 0.08 deleterious(0) probably_damaging(0.962) TCGA-DM-A280-01 3 55038842 55038842 G A CACNA2D3 Missense_Mutation p.D915N 0.25 tolerated(0.51) possibly_damaging(0.461) TCGA-DM-A280-01 3 57494905 57494905 C T DNAH12 Silent p.S168S 0.20 TCGA-DM-A280-01 3 64148775 64148775 C T PRICKLE2 Missense_Mutation p.E59K 0.25 tolerated(0.05) benign(0.043) TCGA-DM-A280-01 3 64579954 64579954 T G ADAMTS9 Missense_Mutation p.S1446R 0.13 tolerated(0.32) benign(0.016) TCGA-DM-A280-01 4 10447712 10447712 C T ZNF518B Missense_Mutation p.D81N 0.19 tolerated(0.09) benign(0.118) TCGA-DM-A280-01 4 126389769 126389769 A C FAT4 Missense_Mutation p.K4001T 0.09 benign(0.017) TCGA-DM-A280-01 4 156137862 156137862 G T NPY2R 3'UTR 0.15 TCGA-DM-A280-01 4 156138144 156138144 C T NPY2R 3'UTR 0.21 TCGA-DM-A280-01 4 158257856 158257856 T C GRIA2 Missense_Mutation p.S601P 0.13 deleterious(0) possibly_damaging(0.517) TCGA-DM-A280-01 4 158257857 158257857 C A GRIA2 Missense_Mutation p.S601Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-DM-A280-01 4 36134873 36134873 G A ARAP2 Silent p.S1134S 0.20 TCGA-DM-A280-01 4 62813870 62813870 G A LPHN3 Missense_Mutation p.R826H 0.10 tolerated(0.08) benign(0.02) TCGA-DM-A280-01 5 112175648 112175648 C - APC Frame_Shift_Del p.P1453Lfs*20 0.09 TCGA-DM-A280-01 5 127595376 127595376 G T FBN2 Missense_Mutation p.S2837Y 0.17 deleterious(0.02) possibly_damaging(0.781) TCGA-DM-A280-01 5 133873770 133873770 C T JADE2 Silent p.S50S 0.28 TCGA-DM-A280-01 5 140229839 140229839 G A PCDHA9 Missense_Mutation p.A587T 0.08 deleterious_low_confidence(0.04) benign(0.087) TCGA-DM-A280-01 5 140480941 140480941 C T PCDHB3 Silent p.N236N 0.22 TCGA-DM-A280-01 5 140554539 140554539 C T PCDHB7 Missense_Mutation p.A708V 0.11 tolerated_low_confidence(0.13) benign(0.091) TCGA-DM-A280-01 5 140562562 140562562 C T PCDHB16 Missense_Mutation p.P143L 0.24 tolerated_low_confidence(0.71) benign(0.013) TCGA-DM-A280-01 5 140712372 140712372 C T PCDHGA1 Silent p.F707F 0.28 TCGA-DM-A280-01 5 140751306 140751306 G A PCDHGB3 Missense_Mutation p.V449I 0.17 deleterious(0.02) benign(0.253) TCGA-DM-A280-01 5 178552008 178552008 C A ADAMTS2 Missense_Mutation p.C975F 0.31 deleterious(0) probably_damaging(1) TCGA-DM-A280-01 5 179757787 179757787 G T GFPT2 Silent p.I149I 0.15 TCGA-DM-A280-01 5 23527476 23527476 A C PRDM9 Missense_Mutation p.K760T 0.10 deleterious(0) benign(0.287) TCGA-DM-A280-01 5 90008190 90008190 T C GPR98 Silent p.F3043F 0.24 TCGA-DM-A280-01 6 112471739 112471739 A C LAMA4 Missense_Mutation p.V716G 0.11 tolerated(0.12) benign(0.021) TCGA-DM-A280-01 6 133783490 133783490 T C EYA4 Missense_Mutation p.L152P 0.09 deleterious(0.04) probably_damaging(1) TCGA-DM-A280-01 6 152470778 152470778 T G SYNE1 Missense_Mutation p.N8159T 0.12 possibly_damaging(0.774) TCGA-DM-A280-01 6 154428973 154428973 A C OPRM1 Intron 0.22 TCGA-DM-A280-01 6 161022110 161022110 C A LPA Missense_Mutation p.C989F 0.16 deleterious(0) probably_damaging(0.999) TCGA-DM-A280-01 6 32036481 32036481 G A TNXB Missense_Mutation p.P1969L 0.17 possibly_damaging(0.573) TCGA-DM-A280-01 6 3456341 3456341 G C SLC22A23 Missense_Mutation p.N151K 0.20 tolerated(0.06) benign(0.395) TCGA-DM-A280-01 6 43530011 43530011 C T XPO5 Silent p.A328A 0.17 TCGA-DM-A280-01 6 50682867 50682867 G T TFAP2D Missense_Mutation p.Q26H 0.14 tolerated(0.07) possibly_damaging(0.781) TCGA-DM-A280-01 7 119914673 119914673 C T KCND2 5'UTR 0.12 TCGA-DM-A280-01 7 150696070 150696070 C G NOS3 Missense_Mutation p.R285G 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A280-01 7 37955827 37955827 G A SFRP4 Missense_Mutation p.R105C 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-DM-A280-01 7 39379408 39379408 C A POU6F2 Missense_Mutation p.Q227K 0.12 tolerated_low_confidence(0.16) unknown(0) TCGA-DM-A280-01 7 50198782 50198782 C T C7orf72 3'UTR 0.17 TCGA-DM-A280-01 7 82582472 82582472 T G PCLO Missense_Mutation p.Q2599H 0.09 unknown(0) TCGA-DM-A280-01 7 86394541 86394541 A T GRM3 Missense_Mutation p.N27I 0.10 tolerated(0.28) benign(0.002) TCGA-DM-A280-01 7 99688217 99688217 G A COPS6 Silent p.V142V 0.12 TCGA-DM-A280-01 8 103307450 103307450 G A UBR5 Missense_Mutation p.S1347L 0.11 tolerated(0.63) probably_damaging(0.945) TCGA-DM-A280-01 8 116599488 116599488 G A TRPS1 Missense_Mutation p.R814W 0.26 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-DM-A280-01 8 140630718 140630718 C T KCNK9 Missense_Mutation p.R303H 0.20 tolerated(0.06) benign(0.006) TCGA-DM-A280-01 9 107289152 107289152 G T OR13C4 Missense_Mutation p.F113L 0.19 tolerated(0.33) benign(0.001) TCGA-DM-A280-01 9 138516264 138516264 G T GLT6D1 Missense_Mutation p.F170L 0.29 deleterious(0) probably_damaging(0.955) TCGA-DM-A280-01 X 114426478 114426478 C G RBMXL3 Missense_Mutation p.S825C 0.18 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-DM-A280-01 X 129363020 129363020 G T ZNF280C Silent p.R360R 0.10 TCGA-DM-A280-01 X 140984849 140984849 A C MAGEC3 Missense_Mutation p.E435D 0.08 tolerated(0.07) benign(0.04) TCGA-DM-A280-01 X 147743992 147743992 G A AFF2 Silent p.A248A 0.17 TCGA-DM-A280-01 X 153662594 153662594 G A ATP6AP1 Missense_Mutation p.R242H 0.21 deleterious(0) probably_damaging(0.995) TCGA-DM-A280-01 X 31697511 31697511 T C DMD Missense_Mutation p.K2618R 0.09 benign(0.001) TCGA-DM-A280-01 X 34962238 34962238 C T FAM47B Silent p.T430T 0.23 TCGA-DM-A280-01 X 37027188 37027188 C A FAM47C Missense_Mutation p.H235Q 0.10 tolerated(0.07) benign(0.18) TCGA-DM-A280-01 X 38144875 38144875 G A RPGR Missense_Mutation p.S1126L 0.23 unknown(0) TCGA-DM-A280-01 X 38540520 38540520 G A TSPAN7 Silent p.A220A 0.17 TCGA-DM-A280-01 X 48847595 48847595 G T GRIPAP1 Intron 0.25 TCGA-DM-A280-01 X 48932932 48932932 C T WDR45 Missense_Mutation p.R280H 0.20 tolerated(0.07) benign(0.04) TCGA-DM-A280-01 X 77528938 77528938 A C CYSLTR1 Silent p.A102A 0.11 TCGA-DM-A280-01 X 79699825 79699825 A C FAM46D 3'UTR 0.11 TCGA-DM-A280-01 X 82763622 82763622 G A POU3F4 Missense_Mutation p.R97H 0.27 deleterious(0.01) benign(0.286) TCGA-DM-A280-01 X 83129297 83129297 T G CYLC1 Silent p.S527S 0.08 TCGA-DM-A280-01 X 90690720 90690720 A G PABPC5 Silent p.R48R 0.18 TCGA-DM-A280-01 X 91873299 91873299 C T PCDH11X Missense_Mutation p.A1135V 0.15 deleterious(0.01) benign(0.065) TCGA-DM-A282-01 10 100195049 100195049 G A HPS1 Silent p.D126D 0.34 TCGA-DM-A282-01 10 114911576 114911576 G T TCF7L2 Missense_Mutation p.R365I 0.31 deleterious(0) probably_damaging(0.999) TCGA-DM-A282-01 10 12021101 12021101 T G UPF2 Silent p.V636V 0.32 TCGA-DM-A282-01 10 54050008 54050008 A G PRKG1 Silent p.E640E 0.43 TCGA-DM-A282-01 10 81373600 81373600 G A SFTPA1 Missense_Mutation p.G175S 0.37 deleterious(0) probably_damaging(0.996) TCGA-DM-A282-01 10 98078272 98078272 C T DNTT Missense_Mutation p.H123Y 0.35 tolerated(0.13) benign(0.038) TCGA-DM-A282-01 11 131781518 131781518 G A NTM Missense_Mutation p.R48Q 0.10 deleterious(0.04) possibly_damaging(0.556) TCGA-DM-A282-01 11 1501971 1501971 C A MOB2 Missense_Mutation p.E85D 0.11 deleterious(0) probably_damaging(0.999) TCGA-DM-A282-01 11 51411998 51412005 ATGGTCAA - OR4A5 Frame_Shift_Del p.L131Hfs*44 0.28 TCGA-DM-A282-01 11 57507584 57507584 G A TMX2 Missense_Mutation p.R253Q 0.30 tolerated(0.18) possibly_damaging(0.758) TCGA-DM-A282-01 11 59837146 59837146 G C MS4A3 Missense_Mutation p.E205Q 0.16 tolerated(0.11) benign(0.126) TCGA-DM-A282-01 11 64756512 64756512 C A BATF2 3'UTR 0.30 TCGA-DM-A282-01 11 7022736 7022736 C A ZNF214 Nonsense_Mutation p.E60* 0.31 TCGA-DM-A282-01 12 10224014 10224014 C T CLEC1A Missense_Mutation p.R254H 0.20 tolerated(0.47) benign(0.108) TCGA-DM-A282-01 12 107713208 107713208 G A BTBD11 Missense_Mutation p.S164N 0.34 deleterious(0) unknown(0) TCGA-DM-A282-01 12 11285922 11285922 G A TAS2R30 Missense_Mutation p.L308F 0.36 tolerated_low_confidence(0.22) benign(0.14) TCGA-DM-A282-01 12 113307748 113307748 C T RPH3A Missense_Mutation p.R234C 0.26 deleterious(0.03) probably_damaging(0.915) TCGA-DM-A282-01 12 25362833 25362835 CAT - KRAS 3'UTR 0.29 TCGA-DM-A282-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.35 deleterious(0) benign(0.361) TCGA-DM-A282-01 12 56865353 56865353 T A GLS2 Missense_Mutation p.Q576L 0.24 tolerated(0.11) benign(0.005) TCGA-DM-A282-01 13 103514721 103514721 G A BIVM-ERCC5 Missense_Mutation p.D834N 0.16 tolerated_low_confidence(0.26) benign(0.006) TCGA-DM-A282-01 13 58206826 58206826 C T PCDH17 Missense_Mutation p.P49L 0.36 tolerated(0.59) benign(0) TCGA-DM-A282-01 13 84453564 84453564 C T SLITRK1 Silent p.S693S 0.47 TCGA-DM-A282-01 14 102446865 102446865 C A DYNC1H1 Silent p.T313T 0.29 TCGA-DM-A282-01 14 102918906 102918906 G T TECPR2 Silent p.T1194T 0.25 TCGA-DM-A282-01 14 105614531 105614531 C T JAG2 Missense_Mutation p.G724S 0.37 deleterious(0.01) possibly_damaging(0.884) TCGA-DM-A282-01 14 24530145 24530145 A T LRRC16B Missense_Mutation p.S734C 0.50 deleterious(0) probably_damaging(0.962) TCGA-DM-A282-01 14 63468166 63468166 A - KCNH5 Frame_Shift_Del p.W106Gfs*9 0.33 TCGA-DM-A282-01 14 77872318 77872318 G C NOXRED1 Missense_Mutation p.C281W 0.39 deleterious(0) probably_damaging(0.959) TCGA-DM-A282-01 14 94733316 94733316 A C PPP4R4 Missense_Mutation p.Y800S 0.18 tolerated_low_confidence(0.34) benign(0.007) TCGA-DM-A282-01 15 65681151 65681151 G A IGDCC4 Missense_Mutation p.T901M 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-DM-A282-01 15 90159689 90159689 A G TICRR Missense_Mutation p.I975V 0.08 tolerated(0.68) benign(0.008) TCGA-DM-A282-01 16 10788510 10788510 G A TEKT5 Missense_Mutation p.P74L 0.54 tolerated(0.1) benign(0.006) TCGA-DM-A282-01 16 50346929 50346929 C A ADCY7 Silent p.I911I 0.53 TCGA-DM-A282-01 16 67964429 67964429 G A CTRL Silent p.L127L 0.35 TCGA-DM-A282-01 17 39596778 39596778 C A KRT38 Silent p.L132L 0.26 TCGA-DM-A282-01 18 25532097 25532097 A T CDH2 3'UTR 0.73 TCGA-DM-A282-01 18 28979361 28979361 G A DSG4 Missense_Mutation p.D378N 0.62 tolerated(1) benign(0.001) TCGA-DM-A282-01 18 44555097 44555097 C T TCEB3C Missense_Mutation p.D373N 0.10 deleterious(0) benign(0.342) TCGA-DM-A282-01 18 671387 671387 A G TYMS Missense_Mutation p.D247G 0.10 deleterious(0) probably_damaging(0.939) TCGA-DM-A282-01 19 21299916 21299916 G A ZNF714 Missense_Mutation p.C149Y 0.40 tolerated(0.11) possibly_damaging(0.871) TCGA-DM-A282-01 19 52090220 52090220 C T ZNF175 Silent p.N212N 0.36 TCGA-DM-A282-01 19 53611786 53611786 G T ZNF415 Silent p.S504S 0.30 TCGA-DM-A282-01 19 8591767 8591767 G T MYO1F Missense_Mutation p.L843M 0.27 deleterious(0.03) possibly_damaging(0.724) TCGA-DM-A282-01 19 8996454 8996454 G T MUC16 Silent p.I13706I 0.32 TCGA-DM-A282-01 19 9324783 9324783 T C OR7D4 Missense_Mutation p.H244R 0.21 deleterious(0.01) possibly_damaging(0.884) TCGA-DM-A282-01 1 100159736 100159736 A G PALMD 3'UTR 0.43 TCGA-DM-A282-01 1 109795405 109795405 C T CELSR2 Missense_Mutation p.R902C 0.11 deleterious(0) probably_damaging(0.959) TCGA-DM-A282-01 1 147091249 147091249 T - BCL9 Frame_Shift_Del p.F430Lfs*21 0.25 TCGA-DM-A282-01 1 151259083 151259083 G A ZNF687 Missense_Mutation p.G106R 0.45 deleterious(0.02) benign(0.166) TCGA-DM-A282-01 1 152280751 152280751 C T FLG Missense_Mutation p.R2204K 0.44 benign(0.22) TCGA-DM-A282-01 1 152284999 152284999 C T FLG Missense_Mutation p.R788Q 0.26 possibly_damaging(0.685) TCGA-DM-A282-01 1 154317927 154317927 G A ATP8B2 Missense_Mutation p.R900Q 0.35 deleterious(0) probably_damaging(0.993) TCGA-DM-A282-01 1 216896662 216896662 T C ESRRG 5'UTR 0.08 TCGA-DM-A282-01 1 220936343 220936343 A G MARC2 Missense_Mutation p.E234G 0.36 tolerated(0.19) benign(0.253) TCGA-DM-A282-01 1 237778086 237778086 C A RYR2 Silent p.G1886G 0.34 TCGA-DM-A282-01 1 23782639 23782639 G A ASAP3 Missense_Mutation p.R60W 0.76 deleterious(0) probably_damaging(0.976) TCGA-DM-A282-01 1 237991690 237991690 T A RYR2 Missense_Mutation p.I4867N 0.44 possibly_damaging(0.7) TCGA-DM-A282-01 1 248801812 248801812 C T OR2T35 Missense_Mutation p.V250I 0.18 tolerated(0.25) benign(0) TCGA-DM-A282-01 1 34238348 34238348 G A CSMD2 Silent p.I516I 0.25 TCGA-DM-A282-01 1 38187426 38187426 G A EPHA10 Silent p.S684S 0.39 TCGA-DM-A282-01 1 43316994 43316994 C T ZNF691 Missense_Mutation p.S153L 0.33 deleterious(0) probably_damaging(0.965) TCGA-DM-A282-01 1 47606542 47606542 C T CYP4A22 Missense_Mutation p.R96C 0.29 tolerated(0.08) possibly_damaging(0.848) TCGA-DM-A282-01 1 57491653 57491653 C T DAB1 Splice_Site p.X262_splice 0.34 TCGA-DM-A282-01 20 32248100 32248100 C T NECAB3 Silent p.A163A 0.38 TCGA-DM-A282-01 20 40944555 40944555 G A PTPRT Silent p.P649P 0.17 TCGA-DM-A282-01 20 45194884 45194884 G A SLC13A3 Missense_Mutation p.P493L 0.20 deleterious(0) probably_damaging(1) TCGA-DM-A282-01 20 5539418 5539418 C T GPCPD1 Missense_Mutation p.G527E 0.16 deleterious(0) probably_damaging(1) TCGA-DM-A282-01 21 27372462 27372462 G C APP Missense_Mutation p.R301G 0.26 deleterious(0) probably_damaging(0.932) TCGA-DM-A282-01 21 30909579 30909579 C T GRIK1 Missense_Mutation p.R941Q 0.36 deleterious_low_confidence(0.01) benign(0.002) TCGA-DM-A282-01 21 47361674 47361674 C T PCBP3 3'UTR 0.40 TCGA-DM-A282-01 22 19808858 19808858 C T GNB1L Silent p.P7P 0.43 TCGA-DM-A282-01 22 24951594 24951594 G T GUCD1 5'Flank 0.13 TCGA-DM-A282-01 22 37770829 37770829 G A ELFN2 Missense_Mutation p.S249L 0.45 tolerated(0.66) benign(0.002) TCGA-DM-A282-01 22 46932000 46932000 C T CELSR1 Silent p.S356S 0.43 TCGA-DM-A282-01 22 50523238 50523238 C T MLC1 Missense_Mutation p.A32T 0.29 tolerated_low_confidence(0.46) benign(0.001) TCGA-DM-A282-01 22 50615968 50615968 G A PANX2 Missense_Mutation p.R276H 0.35 tolerated(0.11) benign(0.106) TCGA-DM-A282-01 2 11053235 11053235 C T KCNF1 Missense_Mutation p.A228V 0.33 tolerated(1) benign(0.061) TCGA-DM-A282-01 2 131673224 131673224 G A ARHGEF4 5'Flank 0.45 TCGA-DM-A282-01 2 196593068 196593068 G C SLC39A10 Missense_Mutation p.D778H 0.34 deleterious(0) probably_damaging(1) TCGA-DM-A282-01 2 23974800 23974800 G C ATAD2B 3'UTR 0.21 TCGA-DM-A282-01 2 25359452 25359452 C T EFR3B Silent p.T515T 0.33 TCGA-DM-A282-01 2 33012051 33012051 A G TTC27 Silent p.K611K 0.09 TCGA-DM-A282-01 2 39240624 39240624 T C SOS1 Missense_Mutation p.E715G 0.36 tolerated(0.06) probably_damaging(0.926) TCGA-DM-A282-01 2 48032087 48032087 C T MSH6 Silent p.Y1159Y 0.37 TCGA-DM-A282-01 2 80816448 80816448 C T CTNNA2 Missense_Mutation p.P676L 0.40 deleterious(0.02) possibly_damaging(0.599) TCGA-DM-A282-01 3 121191009 121191009 G A POLQ Silent p.D2182D 0.23 TCGA-DM-A282-01 3 128987385 128987385 A G COPG1 Missense_Mutation p.T566A 0.12 tolerated(0.43) benign(0.027) TCGA-DM-A282-01 3 130311932 130311932 G A COL6A6 Missense_Mutation p.G1467R 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A282-01 3 136240223 136240223 G C STAG1 Missense_Mutation p.Q170E 0.22 tolerated(0.18) benign(0.102) TCGA-DM-A282-01 3 139075837 139075837 G A MRPS22 Missense_Mutation p.R355H 0.47 deleterious(0.01) benign(0.172) TCGA-DM-A282-01 3 44489660 44489660 C T ZNF445 Silent p.A501A 0.37 TCGA-DM-A282-01 3 46062772 46062772 G A XCR1 Missense_Mutation p.T223M 0.35 deleterious(0) probably_damaging(0.999) TCGA-DM-A282-01 3 48895081 48895081 C T SLC25A20 3'UTR 0.19 TCGA-DM-A282-01 3 52436342 52436342 G A BAP1 Missense_Mutation p.R718W 0.38 deleterious(0) probably_damaging(0.999) TCGA-DM-A282-01 3 78717051 78717051 C A ROBO1 Missense_Mutation p.D650Y 0.32 deleterious(0) probably_damaging(0.996) TCGA-DM-A282-01 4 113362487 113362487 G C ALPK1 3'UTR 0.55 TCGA-DM-A282-01 4 117220909 117220909 G A MTRNR2L13 5'UTR 0.33 TCGA-DM-A282-01 4 155158082 155158082 G A DCHS2 Silent p.I2119I 0.50 TCGA-DM-A282-01 4 165879255 165879255 C T FAM218A 3'UTR 0.09 TCGA-DM-A282-01 4 5564752 5564752 G A EVC2 Silent p.G1250G 0.30 TCGA-DM-A282-01 4 93225748 93225748 G T GRID2 5'UTR 0.40 TCGA-DM-A282-01 5 112175390 112175390 C T APC Nonsense_Mutation p.Q1367* 0.43 TCGA-DM-A282-01 5 112478936 112478936 C T MCC Missense_Mutation p.R288H 0.29 tolerated(0.09) benign(0.004) TCGA-DM-A282-01 5 140432730 140432730 C T PCDHB1 Missense_Mutation p.R559C 0.39 deleterious(0.02) benign(0.003) TCGA-DM-A282-01 5 140754698 140754698 A T PCDHGA6 Missense_Mutation p.T350S 0.10 deleterious_low_confidence(0) benign(0.282) TCGA-DM-A282-01 5 140812476 140812476 G A PCDHGA12 Missense_Mutation p.R717Q 0.49 tolerated_low_confidence(0.07) benign(0.055) TCGA-DM-A282-01 5 15936846 15936846 C T FBXL7 Missense_Mutation p.R343W 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A282-01 5 176868754 176868754 G A GRK6 Missense_Mutation p.A566T 0.35 tolerated_low_confidence(0.31) unknown(0) TCGA-DM-A282-01 5 178506885 178506885 C T ZNF354C Silent p.T484T 0.28 TCGA-DM-A282-01 5 55212559 55212559 G T IL31RA Missense_Mutation p.V636L 0.34 tolerated(1) benign(0.001) TCGA-DM-A282-01 6 112441658 112441658 C T LAMA4 Missense_Mutation p.R1498H 0.38 tolerated(0.06) possibly_damaging(0.677) TCGA-DM-A282-01 6 118801636 118801636 G A CEP85L Missense_Mutation p.R599C 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A282-01 6 137815017 137815017 G A OLIG3 Silent p.H97H 0.40 TCGA-DM-A282-01 6 160164786 160164786 C T WTAP Nonsense_Mutation p.R79* 0.35 TCGA-DM-A282-01 6 26373307 26373307 C T BTN3A2 Missense_Mutation p.R300W 0.50 deleterious(0.04) benign(0.167) TCGA-DM-A282-01 6 32014069 32014069 C T TNXB 5'Flank 0.56 TCGA-DM-A282-01 6 34951143 34951143 C A ANKS1A Missense_Mutation p.T318N 0.42 tolerated(0.41) benign(0.082) TCGA-DM-A282-01 6 43612965 43612965 G A RSPH9 Missense_Mutation p.V44I 0.23 tolerated(0.11) possibly_damaging(0.621) TCGA-DM-A282-01 7 1484768 1484768 G A MICALL2 Missense_Mutation p.S313F 0.44 tolerated(0.2) benign(0.252) TCGA-DM-A282-01 7 20706531 20706532 - T ABCB5 Intron 0.38 TCGA-DM-A282-01 7 44578421 44578421 A G NPC1L1 Silent p.C525C 0.32 TCGA-DM-A282-01 7 48260896 48260897 - T ABCA13 Frame_Shift_Ins p.T156Yfs*6 0.30 TCGA-DM-A282-01 7 77762255 77762255 C T MAGI2 Missense_Mutation p.A1052T 0.37 tolerated(0.79) benign(0.001) TCGA-DM-A282-01 7 92765221 92765222 - T SAMD9L Frame_Shift_Ins p.W22Mfs*4 0.29 TCGA-DM-A282-01 8 145642095 145642095 C T SLC39A4 Missense_Mutation p.G27S 0.33 tolerated(0.47) benign(0.003) TCGA-DM-A282-01 8 15621834 15621834 C T TUSC3 3'UTR 0.19 TCGA-DM-A282-01 8 2048676 2048676 C T MYOM2 Silent p.Y817Y 0.33 TCGA-DM-A282-01 8 22785141 22785141 C T PEBP4 Silent p.P29P 0.37 TCGA-DM-A282-01 8 2910135 2910135 G A CSMD1 Silent p.N2503N 0.49 TCGA-DM-A282-01 8 3047474 3047474 G A CSMD1 Silent p.N1786N 0.43 TCGA-DM-A282-01 8 32617765 32617765 T C NRG1 Missense_Mutation p.V375A 0.35 tolerated(0.07) benign(0.019) TCGA-DM-A282-01 8 79629673 79629673 C T ZC2HC1A Missense_Mutation p.P308L 0.45 deleterious(0) probably_damaging(1) TCGA-DM-A282-01 9 131553694 131553694 A G TBC1D13 Silent p.S58S 0.39 TCGA-DM-A282-01 9 26920307 26920307 C T PLAA Missense_Mutation p.G372E 0.23 tolerated(0.23) benign(0.006) TCGA-DM-A282-01 9 34724201 34724201 T A FAM205A Silent p.V1012V 0.37 TCGA-DM-A282-01 9 35689857 35689857 G A TPM2 5'UTR 0.38 TCGA-DM-A282-01 X 118223672 118223672 C T KIAA1210 Missense_Mutation p.M507I 0.64 tolerated(1) benign(0) TCGA-DM-A282-01 X 119293067 119293067 G A RHOXF2 Missense_Mutation p.E76K 0.15 tolerated(0.83) probably_damaging(0.98) TCGA-DM-A282-01 X 119293076 119293076 G A RHOXF2 Missense_Mutation p.D79N 0.14 tolerated(0.4) benign(0.002) TCGA-DM-A282-01 X 12736750 12736750 C A FRMPD4 Missense_Mutation p.P1269T 0.12 tolerated_low_confidence(0.08) benign(0.01) TCGA-DM-A282-01 X 12838893 12838893 G A PRPS2 Missense_Mutation p.D282N 0.23 tolerated(0.08) benign(0.116) TCGA-DM-A282-01 X 142717611 142717611 C G SLITRK4 Missense_Mutation p.E438D 0.27 tolerated(0.22) probably_damaging(0.992) TCGA-DM-A282-01 X 27840761 27840761 C T MAGEB10 3'UTR 0.53 TCGA-DM-A282-01 X 77150803 77150803 C A MAGT1 Intron 0.23 TCGA-DM-A285-01 10 13652108 13652108 G T PRPF18 Missense_Mutation p.G145C 0.10 deleterious(0) probably_damaging(0.962) TCGA-DM-A285-01 10 21129730 21129730 C A NEBL Nonsense_Mutation p.E426* 0.20 TCGA-DM-A285-01 10 38647368 38647368 C T HSD17B7P2 RNA 0.30 TCGA-DM-A285-01 10 70066656 70066656 G C PBLD 5'UTR 0.14 TCGA-DM-A285-01 10 70525701 70525701 T C CCAR1 Silent p.Y721Y 0.21 TCGA-DM-A285-01 10 88419719 88419719 A G OPN4 Missense_Mutation p.S301G 0.13 tolerated(0.07) benign(0.017) TCGA-DM-A285-01 10 94366447 94366447 T A KIF11 Silent p.I94I 0.25 TCGA-DM-A285-01 10 95111323 95111323 T A MYOF Missense_Mutation p.K1223N 0.14 tolerated(0.13) probably_damaging(0.978) TCGA-DM-A285-01 11 113078060 113078060 G A NCAM1 Missense_Mutation p.D295N 0.33 tolerated(0.41) benign(0.004) TCGA-DM-A285-01 11 117870067 117870067 A G IL10RA Missense_Mutation p.D483G 0.12 tolerated(0.35) benign(0.002) TCGA-DM-A285-01 11 120776140 120776140 G A GRIK4 Missense_Mutation p.V472M 0.15 tolerated(0.15) possibly_damaging(0.572) TCGA-DM-A285-01 11 123813958 123813958 T - OR6T1 Frame_Shift_Del p.K196Nfs*18 0.21 TCGA-DM-A285-01 11 1247949 1247949 G A MUC5B Missense_Mutation p.V102M 0.36 unknown(0) TCGA-DM-A285-01 11 133790037 133790037 C A IGSF9B Missense_Mutation p.V1195L 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DM-A285-01 11 134240273 134240273 G A GLB1L2 Missense_Mutation p.A399T 0.29 tolerated(0.15) benign(0.019) TCGA-DM-A285-01 11 18158959 18158959 G A MRGPRX3 Silent p.A70A 0.20 TCGA-DM-A285-01 11 33374799 33374799 C T HIPK3 Silent p.H1111H 0.37 TCGA-DM-A285-01 11 44104827 44104827 G C ACCS Missense_Mutation p.G407A 0.08 tolerated(0.07) benign(0.088) TCGA-DM-A285-01 11 57373518 57373518 C A SERPING1 Silent p.R241R 0.12 TCGA-DM-A285-01 11 59225182 59225182 A T OR4D6 Missense_Mutation p.H250L 0.08 tolerated(0.13) probably_damaging(0.999) TCGA-DM-A285-01 11 63885622 63885622 G A FLRT1 Missense_Mutation p.R628H 0.32 tolerated(0.19) benign(0.003) TCGA-DM-A285-01 11 64882275 64882275 C T TM7SF2 Missense_Mutation p.L232F 0.12 tolerated(0.16) probably_damaging(0.964) TCGA-DM-A285-01 11 93834413 93834413 C G HEPHL1 Missense_Mutation p.N829K 0.40 deleterious(0) probably_damaging(1) TCGA-DM-A285-01 12 100452464 100452464 A T UHRF1BP1L Missense_Mutation p.L864H 0.08 deleterious(0) probably_damaging(0.945) TCGA-DM-A285-01 12 105593235 105593235 G C APPL2 Missense_Mutation p.S266C 0.26 tolerated(0.17) possibly_damaging(0.828) TCGA-DM-A285-01 12 130184870 130184870 G T TMEM132D Silent p.I151I 0.14 TCGA-DM-A285-01 12 132528247 132528247 G T EP400 Nonsense_Mutation p.E2142* 0.07 TCGA-DM-A285-01 12 25398262 25398262 C G KRAS Missense_Mutation p.L19F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A285-01 12 31945008 31945008 G - H3F3C Frame_Shift_Del p.S32Lfs*5 0.19 TCGA-DM-A285-01 12 43825135 43825135 A G ADAMTS20 Silent p.P1087P 0.11 TCGA-DM-A285-01 12 49176558 49176558 C T ADCY6 Silent p.A220A 0.40 TCGA-DM-A285-01 12 49420885 49420885 G A KMT2D Missense_Mutation p.S4955F 0.29 unknown(0) TCGA-DM-A285-01 12 5026916 5026916 A T KCNA1 3'UTR 0.11 TCGA-DM-A285-01 12 50790087 50790087 G A FAM186A Nonsense_Mutation p.R61* 0.25 TCGA-DM-A285-01 12 7249349 7249349 G T C1RL Missense_Mutation p.R368S 0.10 tolerated(0.72) benign(0.018) TCGA-DM-A285-01 12 81111115 81111115 C T MYF5 Silent p.R91R 0.26 TCGA-DM-A285-01 12 91502507 91502507 T C LUM Missense_Mutation p.K84E 0.09 deleterious(0.02) benign(0.102) TCGA-DM-A285-01 13 100543584 100543584 T A CLYBL Missense_Mutation p.F314I 0.11 deleterious(0) probably_damaging(0.992) TCGA-DM-A285-01 13 114523927 114523927 G C GAS6 Missense_Mutation p.N649K 0.39 deleterious(0) possibly_damaging(0.47) TCGA-DM-A285-01 13 39425132 39425132 A G FREM2 Missense_Mutation p.E2210G 0.14 deleterious(0) probably_damaging(0.999) TCGA-DM-A285-01 13 43566282 43566282 A G EPSTI1 Missense_Mutation p.V7A 0.30 tolerated_low_confidence(0.06) benign(0.023) TCGA-DM-A285-01 13 46065587 46065587 G T COG3 Missense_Mutation p.D337Y 0.06 deleterious(0.04) benign(0.232) TCGA-DM-A285-01 13 51530749 51530749 G T RNASEH2B 3'UTR 0.27 TCGA-DM-A285-01 13 52348165 52348165 G A DHRS12 Silent p.T172T 0.08 TCGA-DM-A285-01 13 52516609 52516609 C A ATP7B Missense_Mutation p.V1109L 0.49 tolerated(0.11) benign(0.405) TCGA-DM-A285-01 13 52605251 52605251 C A UTP14C 3'UTR 0.33 TCGA-DM-A285-01 13 78178515 78178515 T G SCEL Missense_Mutation p.I374M 0.06 deleterious_low_confidence(0) benign(0.054) TCGA-DM-A285-01 13 95899337 95899337 T A ABCC4 Missense_Mutation p.K66N 0.13 tolerated(0.09) benign(0.009) TCGA-DM-A285-01 14 102898280 102898280 G C TECPR2 Missense_Mutation p.S411T 0.32 tolerated(0.12) probably_damaging(0.998) TCGA-DM-A285-01 14 47613446 47613446 T A MDGA2 Missense_Mutation p.Q209H 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-DM-A285-01 14 51464729 51464729 G A TRIM9 Intron 0.34 TCGA-DM-A285-01 14 75497310 75497310 A G MLH3 Missense_Mutation p.F1308S 0.20 deleterious(0) probably_damaging(0.969) TCGA-DM-A285-01 14 81609546 81609546 G T TSHR Missense_Mutation p.D382Y 0.22 tolerated(0.13) probably_damaging(0.967) TCGA-DM-A285-01 14 86092285 86092285 C A FLRT2 3'UTR 0.09 TCGA-DM-A285-01 14 94754877 94754877 A C SERPINA10 Missense_Mutation p.F246L 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A285-01 15 22954310 22954310 T G CYFIP1 Missense_Mutation p.F487C 0.43 deleterious(0) probably_damaging(0.98) TCGA-DM-A285-01 15 24921322 24921322 G A NPAP1 Missense_Mutation p.R103Q 0.40 tolerated(0.06) possibly_damaging(0.895) TCGA-DM-A285-01 15 42170720 42170720 C T SPTBN5 Missense_Mutation p.R1097H 0.12 benign(0.012) TCGA-DM-A285-01 15 75766088 75766088 G A PTPN9 Missense_Mutation p.R384C 0.18 tolerated(0.17) benign(0.002) TCGA-DM-A285-01 16 2018601 2018601 C T RNF151 Missense_Mutation p.S138F 0.22 deleterious(0.02) possibly_damaging(0.49) TCGA-DM-A285-01 16 20325996 20325996 C A GP2 Missense_Mutation p.G513V 0.39 deleterious(0.01) possibly_damaging(0.477) TCGA-DM-A285-01 16 31191458 31191458 C A FUS 5'UTR 0.09 TCGA-DM-A285-01 16 50763727 50763727 A C NOD2 Splice_Site p.X989_splice 0.15 TCGA-DM-A285-01 16 90037735 90037735 G T CENPBD1 3'UTR 0.15 TCGA-DM-A285-01 17 11671835 11671835 T C DNAH9 Silent p.P2412P 0.14 TCGA-DM-A285-01 17 33591745 33591745 A G SLFN5 Missense_Mutation p.Y561C 0.17 deleterious(0.03) probably_damaging(0.95) TCGA-DM-A285-01 17 39183261 39183261 G A KRTAP1-5 Silent p.S49S 0.17 TCGA-DM-A285-01 17 41582012 41582012 C T DHX8 Missense_Mutation p.A516V 0.15 tolerated(0.17) benign(0.008) TCGA-DM-A285-01 17 41738452 41738452 G A MEOX1 Missense_Mutation p.R151W 0.23 deleterious(0) probably_damaging(0.983) TCGA-DM-A285-01 17 46657264 46657264 T C HOXB4 5'UTR 0.31 TCGA-DM-A285-01 17 47587786 47587786 G A NGFR Missense_Mutation p.R194H 0.12 deleterious(0.02) probably_damaging(0.951) TCGA-DM-A285-01 17 57165759 57165759 G C TRIM37 Silent p.L58L 0.13 TCGA-DM-A285-01 17 57812703 57812703 C A VMP1 Silent p.P27P 0.38 TCGA-DM-A285-01 17 74570497 74570497 C T ST6GALNAC2 Missense_Mutation p.R104H 0.08 benign(0.015) TCGA-DM-A285-01 17 7576852 7576852 C T TP53 Splice_Site p.X331_splice 0.52 TCGA-DM-A285-01 17 79425713 79425713 C T RP11-1055B8.7 Missense_Mutation p.R1804W 0.15 probably_damaging(0.998) TCGA-DM-A285-01 17 80730348 80730348 C A TBCD Missense_Mutation p.D201E 0.21 deleterious(0.01) benign(0.077) TCGA-DM-A285-01 18 18547865 18547865 C T ROCK1 Missense_Mutation p.D1014N 0.09 tolerated(0.07) benign(0.049) TCGA-DM-A285-01 18 48591891 48591891 G A SMAD4 Missense_Mutation p.G352R 0.24 deleterious(0) probably_damaging(1) TCGA-DM-A285-01 18 54362208 54362208 T C WDR7 Missense_Mutation p.L379S 0.15 deleterious(0) probably_damaging(0.999) TCGA-DM-A285-01 18 72223589 72223589 C T CNDP1 Missense_Mutation p.A14V 0.52 tolerated_low_confidence(1) benign(0.014) TCGA-DM-A285-01 18 9258267 9258267 G A ANKRD12 Missense_Mutation p.D1668N 0.13 tolerated_low_confidence(0.7) benign(0.002) TCGA-DM-A285-01 19 16770770 16770770 A T CTC-429P9.4 Missense_Mutation p.L21Q 0.35 deleterious_low_confidence(0) unknown(0) TCGA-DM-A285-01 19 18576223 18576223 C T ELL Silent p.L156L 0.17 TCGA-DM-A285-01 19 20308292 20308292 A C ZNF486 Missense_Mutation p.K258T 0.23 tolerated(0.35) benign(0.321) TCGA-DM-A285-01 19 39003006 39003006 C T RYR1 Missense_Mutation p.R3119C 0.17 benign(0.317) TCGA-DM-A285-01 19 41854320 41854320 A G TGFB1 Silent p.Y132Y 0.17 TCGA-DM-A285-01 19 50411463 50411463 C T NUP62 3'UTR 0.27 TCGA-DM-A285-01 19 51171695 51171695 G T SHANK1 Silent p.G1174G 0.36 TCGA-DM-A285-01 19 51827000 51827000 C T IGLON5 Silent p.S81S 0.30 TCGA-DM-A285-01 19 53886229 53886229 A G ZNF525 3'UTR 0.15 TCGA-DM-A285-01 19 54314447 54314447 G A NLRP12 Missense_Mutation p.R156W 0.17 deleterious(0) probably_damaging(1) TCGA-DM-A285-01 19 56011855 56011855 A - SSC5D Splice_Site p.X768_splice 0.36 TCGA-DM-A285-01 19 56369428 56369428 G A NLRP4 Silent p.P223P 0.26 TCGA-DM-A285-01 19 56530755 56530755 G A NLRP5 Missense_Mutation p.E205K 0.18 tolerated(0.93) benign(0) TCGA-DM-A285-01 19 57865095 57865095 T A ZNF304 Missense_Mutation p.S12R 0.29 deleterious(0.04) benign(0.02) TCGA-DM-A285-01 19 9049298 9049298 G A MUC16 Missense_Mutation p.S10778L 0.39 benign(0.118) TCGA-DM-A285-01 1 11090900 11090900 C T MASP2 Missense_Mutation p.R376Q 0.27 tolerated(0.36) benign(0.004) TCGA-DM-A285-01 1 113239304 113239304 A G MOV10 Silent p.A678A 0.12 TCGA-DM-A285-01 1 147091834 147091834 C T BCL9 Nonsense_Mutation p.Q625* 0.28 TCGA-DM-A285-01 1 19181276 19181276 G A TAS1R2 Missense_Mutation p.R230C 0.19 tolerated(0.07) benign(0.006) TCGA-DM-A285-01 1 197071842 197071842 A T ASPM Missense_Mutation p.V2180E 0.27 tolerated(0.06) benign(0.045) TCGA-DM-A285-01 1 222697003 222697003 T C HHIPL2 Silent p.P613P 0.24 TCGA-DM-A285-01 1 223286312 223286312 A C TLR5 Missense_Mutation p.I21S 0.28 tolerated(0.26) benign(0.016) TCGA-DM-A285-01 1 227300540 227300540 C T CDC42BPA Silent p.L574L 0.24 TCGA-DM-A285-01 1 228492881 228492881 C T OBSCN Missense_Mutation p.T4775M 0.30 benign(0.209) TCGA-DM-A285-01 1 228509503 228509503 G A OBSCN Silent p.V5944V 0.18 TCGA-DM-A285-01 1 237951341 237951341 A C RYR2 Missense_Mutation p.K4461T 0.26 probably_damaging(0.913) TCGA-DM-A285-01 1 248616272 248616272 A C OR2T2 Silent p.T58T 0.07 TCGA-DM-A285-01 1 26153245 26153245 C T MTFR1L Missense_Mutation p.R127C 0.28 tolerated(0.06) benign(0.039) TCGA-DM-A285-01 1 3697768 3697769 - G LRRC47 Frame_Shift_Ins p.S546Lfs*61 0.32 TCGA-DM-A285-01 1 47746507 47746507 A T STIL Silent p.V541V 0.11 TCGA-DM-A285-01 1 75038997 75038997 T G C1orf173 Silent p.G799G 0.23 TCGA-DM-A285-01 1 75042597 75042597 A G C1orf173 Missense_Mutation p.Y734H 0.16 tolerated(0.45) benign(0.247) TCGA-DM-A285-01 1 86848684 86848684 T A ODF2L Missense_Mutation p.N146I 0.33 deleterious(0.03) possibly_damaging(0.481) TCGA-DM-A285-01 1 87810525 87810525 C T LMO4 3'UTR 0.22 TCGA-DM-A285-01 1 91851356 91851356 G A HFM1 Missense_Mutation p.A177V 0.25 tolerated_low_confidence(0.31) benign(0.002) TCGA-DM-A285-01 1 980569 980569 G A AGRN Silent p.V761V 0.22 TCGA-DM-A285-01 20 17479526 17479526 G T BFSP1 Missense_Mutation p.Q299K 0.09 tolerated(0.13) benign(0.415) TCGA-DM-A285-01 20 23028708 23028708 G A THBD Silent p.T478T 0.36 TCGA-DM-A285-01 20 42695375 42695375 C - TOX2 Frame_Shift_Del p.P455Rfs*136 0.09 TCGA-DM-A285-01 21 33829999 33829999 A G EVA1C Missense_Mutation p.Y151C 0.22 deleterious(0) probably_damaging(0.992) TCGA-DM-A285-01 21 36081652 36081652 T C CLIC6 Intron 0.20 TCGA-DM-A285-01 21 46310057 46310057 C T ITGB2 Missense_Mutation p.R498Q 0.56 tolerated(0.07) benign(0.358) TCGA-DM-A285-01 22 21150481 21150481 C T PI4KA Missense_Mutation p.G744R 0.26 deleterious(0) probably_damaging(0.994) TCGA-DM-A285-01 2 119915726 119915726 G A C1QL2 Silent p.P40P 0.20 TCGA-DM-A285-01 2 128396787 128396787 G A LIMS2 3'UTR 0.17 TCGA-DM-A285-01 2 136566169 136566169 G T LCT Missense_Mutation p.P1250T 0.22 deleterious(0) possibly_damaging(0.597) TCGA-DM-A285-01 2 162738876 162738876 C A SLC4A10 Missense_Mutation p.F372L 0.20 deleterious(0) probably_damaging(0.994) TCGA-DM-A285-01 2 170042266 170042266 C T LRP2 Missense_Mutation p.E3198K 0.12 benign(0.075) TCGA-DM-A285-01 2 175618366 175618366 C A CHRNA1 Missense_Mutation p.D240Y 0.25 deleterious(0) possibly_damaging(0.813) TCGA-DM-A285-01 2 179495650 179495650 G A TTN Nonsense_Mutation p.R14679* 0.27 TCGA-DM-A285-01 2 179528583 179528583 C T TTN Silent p.L12137L 0.11 TCGA-DM-A285-01 2 179592342 179592342 C T TTN Missense_Mutation p.D6655N 0.24 TCGA-DM-A285-01 2 179654728 179654728 G T TTN Missense_Mutation p.Q639K 0.12 TCGA-DM-A285-01 2 190719155 190719155 C A PMS1 Nonsense_Mutation p.S386* 0.21 TCGA-DM-A285-01 2 196765112 196765112 A G DNAH7 Missense_Mutation p.I1481T 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A285-01 2 212288942 212288942 T G ERBB4 Missense_Mutation p.K935T 0.17 deleterious(0) benign(0.332) TCGA-DM-A285-01 2 61463196 61463196 A G USP34 Missense_Mutation p.F2311L 0.10 deleterious(0) possibly_damaging(0.504) TCGA-DM-A285-01 2 73479988 73479988 G A CCT7 Silent p.%3D 0.39 TCGA-DM-A285-01 2 73651614 73651614 G C ALMS1 Missense_Mutation p.S274T 0.30 probably_damaging(0.991) TCGA-DM-A285-01 3 119642229 119642229 A C GSK3B Missense_Mutation p.I156M 0.27 deleterious(0.03) possibly_damaging(0.479) TCGA-DM-A285-01 3 129218838 129218838 G C IFT122 Missense_Mutation p.V819L 0.10 deleterious(0.01) benign(0.227) TCGA-DM-A285-01 3 147109008 147109008 G A ZIC4 Silent p.F288F 0.14 TCGA-DM-A285-01 3 167034858 167034858 A G ZBBX Silent p.L377L 0.42 TCGA-DM-A285-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-DM-A285-01 3 179051995 179051995 A G ZNF639 Missense_Mutation p.M415V 0.10 tolerated(0.12) possibly_damaging(0.761) TCGA-DM-A285-01 3 184801098 184801098 C T C3orf70 Silent p.P150P 0.26 TCGA-DM-A285-01 3 190122622 190122622 C A CLDN16 Missense_Mutation p.L167I 0.26 tolerated(0.1) benign(0.361) TCGA-DM-A285-01 3 43344672 43344672 T C SNRK 5'UTR 0.26 TCGA-DM-A285-01 3 49060527 49060527 A G NDUFAF3 Silent p.E159E 0.09 TCGA-DM-A285-01 3 51989713 51989713 G A GPR62 Silent p.S15S 0.62 TCGA-DM-A285-01 3 52651406 52651406 C A PBRM1 Nonsense_Mutation p.E564* 0.36 TCGA-DM-A285-01 3 73433698 73433698 G A PDZRN3 Silent p.A673A 0.19 TCGA-DM-A285-01 3 9057383 9057383 G A SRGAP3 Nonsense_Mutation p.R571* 0.32 TCGA-DM-A285-01 4 122593708 122593708 C T ANXA5 Missense_Mutation p.S202N 0.08 tolerated(0.22) probably_damaging(0.931) TCGA-DM-A285-01 4 147561233 147561233 C T POU4F2 Missense_Mutation p.A168V 0.21 tolerated_low_confidence(0.12) benign(0.151) TCGA-DM-A285-01 4 156775288 156775288 A G ASIC5 Missense_Mutation p.Y176H 0.37 tolerated(0.07) benign(0.14) TCGA-DM-A285-01 4 17826628 17826628 T A NCAPG Missense_Mutation p.V474D 0.12 deleterious(0) benign(0.103) TCGA-DM-A285-01 4 44688678 44688678 G A GUF1 Missense_Mutation p.E296K 0.31 deleterious(0.01) probably_damaging(0.972) TCGA-DM-A285-01 4 619748 619748 C A PDE6B Missense_Mutation p.F111L 0.36 tolerated(0.16) probably_damaging(0.999) TCGA-DM-A285-01 4 70361046 70361046 G A UGT2B4 Silent p.Y178Y 0.44 TCGA-DM-A285-01 4 72319250 72319250 C T SLC4A4 Missense_Mutation p.A454V 0.16 tolerated(0.59) benign(0.016) TCGA-DM-A285-01 5 100238579 100238579 T A ST8SIA4 Missense_Mutation p.R27S 0.34 possibly_damaging(0.879) TCGA-DM-A285-01 5 112173912 112173912 C G APC Nonsense_Mutation p.S874* 0.16 TCGA-DM-A285-01 5 112175513 112175513 G T APC Nonsense_Mutation p.E1408* 0.39 TCGA-DM-A285-01 5 121758572 121758572 C A SNCAIP Missense_Mutation p.S47Y 0.21 deleterious(0.03) possibly_damaging(0.766) TCGA-DM-A285-01 5 131042147 131042147 G A FNIP1 Missense_Mutation p.R291C 0.20 deleterious(0) probably_damaging(0.999) TCGA-DM-A285-01 5 137486575 137486575 G T BRD8 Silent p.L993L 0.22 TCGA-DM-A285-01 5 140590809 140590809 A G PCDHB12 Missense_Mutation p.Q777R 0.26 deleterious_low_confidence(0.04) benign(0.003) TCGA-DM-A285-01 5 140596210 140596210 A G PCDHB13 3'UTR 0.10 TCGA-DM-A285-01 5 142659053 142659053 A T NR3C1 3'Flank 0.20 TCGA-DM-A285-01 5 180431758 180431758 C T BTNL3 Silent p.H286H 0.50 TCGA-DM-A285-01 5 36111316 36111316 A G LMBRD2 Missense_Mutation p.M562T 0.08 deleterious(0.01) benign(0.108) TCGA-DM-A285-01 5 80626732 80626732 C T ACOT12 Silent p.S473S 0.15 TCGA-DM-A285-01 6 136913365 136913365 G A MAP3K5 Silent p.I1057I 0.10 TCGA-DM-A285-01 6 160221774 160221774 G A PNLDC1 Missense_Mutation p.R5Q 0.17 tolerated_low_confidence(0.53) unknown(0) TCGA-DM-A285-01 6 27879193 27879193 T A OR2B2 Missense_Mutation p.K302I 0.09 deleterious(0.01) benign(0.374) TCGA-DM-A285-01 6 30460577 30460577 G A HLA-E 3'UTR 0.27 TCGA-DM-A285-01 6 31939339 31939339 C - DXO Frame_Shift_Del p.P41Lfs*88 0.18 TCGA-DM-A285-01 6 43581826 43581826 C A POLH Silent p.S558S 0.30 TCGA-DM-A285-01 6 76782231 76782231 T A IMPG1 5'UTR 0.10 TCGA-DM-A285-01 6 82900819 82900819 A C IBTK Silent p.P1182P 0.16 TCGA-DM-A285-01 6 83848604 83848604 G C DOPEY1 Missense_Mutation p.E1615Q 0.18 tolerated(0.31) benign(0.118) TCGA-DM-A285-01 6 84372129 84372129 A G SNAP91 Missense_Mutation p.Y96H 0.37 deleterious(0) unknown(0) TCGA-DM-A285-01 6 88854904 88854904 G A CNR1 Silent p.Y30Y 0.08 TCGA-DM-A285-01 6 96986556 96986556 A C UFL1 Missense_Mutation p.Q343P 0.12 deleterious(0.02) benign(0.019) TCGA-DM-A285-01 7 100696296 100696296 G C MUC17 Missense_Mutation p.S4378T 0.18 unknown(0) TCGA-DM-A285-01 7 102087156 102087156 G A ORAI2 Missense_Mutation p.R141H 0.18 deleterious(0.03) probably_damaging(0.962) TCGA-DM-A285-01 7 105278917 105278917 A G ATXN7L1 Missense_Mutation p.L362P 0.07 tolerated(0.16) benign(0.305) TCGA-DM-A285-01 7 111409634 111409634 C T DOCK4 Missense_Mutation p.R1251H 0.23 deleterious(0.01) benign(0.067) TCGA-DM-A285-01 7 117501265 117501265 G A CTTNBP2 Missense_Mutation p.R63W 0.45 deleterious(0) probably_damaging(0.956) TCGA-DM-A285-01 7 137237145 137237145 T G DGKI Missense_Mutation p.K706T 0.10 deleterious(0) probably_damaging(0.997) TCGA-DM-A285-01 7 158835856 158835856 C T VIPR2 Missense_Mutation p.C156Y 0.09 deleterious(0) probably_damaging(1) TCGA-DM-A285-01 7 23751873 23751873 C G STK31 Missense_Mutation p.H40D 0.25 deleterious(0) probably_damaging(0.994) TCGA-DM-A285-01 7 31617546 31617546 G T CCDC129 Missense_Mutation p.S249I 0.40 deleterious(0) benign(0.252) TCGA-DM-A285-01 7 37253044 37253044 G A ELMO1 Missense_Mutation p.R284W 0.10 deleterious(0.01) possibly_damaging(0.453) TCGA-DM-A285-01 7 43594307 43594307 G A HECW1 Missense_Mutation p.E1543K 0.16 deleterious(0) probably_damaging(0.999) TCGA-DM-A285-01 7 45748028 45748028 A G ADCY1 Missense_Mutation p.N966S 0.32 deleterious(0.01) probably_damaging(0.95) TCGA-DM-A285-01 7 48407411 48407411 T A ABCA13 Missense_Mutation p.F3570Y 0.24 probably_damaging(0.999) TCGA-DM-A285-01 7 50023061 50023061 G A ZPBP Missense_Mutation p.R280C 0.46 tolerated(0.05) probably_damaging(0.939) TCGA-DM-A285-01 7 54610416 54610416 T C VSTM2A 5'UTR 0.22 TCGA-DM-A285-01 7 6579420 6579420 C T GRID2IP Silent p.V171V 0.11 TCGA-DM-A285-01 7 92078121 92078121 C T GATAD1 Missense_Mutation p.S102F 0.19 deleterious(0.05) possibly_damaging(0.459) TCGA-DM-A285-01 7 92143226 92143226 A C PEX1 Missense_Mutation p.I432R 0.24 deleterious(0) probably_damaging(0.973) TCGA-DM-A285-01 8 116599303 116599303 C T TRPS1 Silent p.K875K 0.21 TCGA-DM-A285-01 8 130789815 130789815 G A GSDMC Missense_Mutation p.R7C 0.12 tolerated(0.19) benign(0.15) TCGA-DM-A285-01 8 139767722 139767722 T C COL22A1 Intron 0.31 TCGA-DM-A285-01 8 24771937 24771937 G A NEFM Missense_Mutation p.E211K 0.32 deleterious(0.02) unknown(0) TCGA-DM-A285-01 8 56652632 56652632 C G TMEM68 3'UTR 0.43 TCGA-DM-A285-01 8 68995505 68995508 TTTG ATA PREX2 Frame_Shift_Del p.F637Ifs*7 0.27 TCGA-DM-A285-01 9 100773606 100773606 G A ANP32B Missense_Mutation p.D191N 0.06 tolerated(0.43) unknown(0) TCGA-DM-A285-01 9 113168978 113168978 C A SVEP1 Missense_Mutation p.G2968W 0.25 probably_damaging(1) TCGA-DM-A285-01 9 127644166 127644166 G A GOLGA1 Missense_Mutation p.A678V 0.10 tolerated(0.17) benign(0.063) TCGA-DM-A285-01 9 130473016 130473016 G A C9orf117 Silent p.S190S 0.09 TCGA-DM-A285-01 9 138714816 138714816 G T CAMSAP1 Missense_Mutation p.P564H 0.36 deleterious(0.04) possibly_damaging(0.519) TCGA-DM-A285-01 9 21334628 21334628 G C KLHL9 Missense_Mutation p.F77L 0.12 deleterious(0) possibly_damaging(0.823) TCGA-DM-A285-01 9 5738451 5738451 G A KIAA1432 Missense_Mutation p.G272S 0.20 tolerated(0.51) possibly_damaging(0.904) TCGA-DM-A285-01 9 84606234 84606234 G A SPATA31D1 Silent p.S283S 0.18 TCGA-DM-A285-01 9 86588200 86588200 C A HNRNPK Splice_Site p.X172_splice 0.39 TCGA-DM-A285-01 9 95796872 95796872 G A FGD3 Missense_Mutation p.R612Q 0.13 tolerated(1) benign(0.001) TCGA-DM-A285-01 9 97063234 97063234 G A ZNF169 Missense_Mutation p.R465H 0.13 deleterious(0) possibly_damaging(0.848) TCGA-DM-A285-01 9 98238332 98238332 C T PTCH1 Missense_Mutation p.R571Q 0.13 deleterious(0) probably_damaging(0.977) TCGA-DM-A285-01 X 101908813 101908813 A G GPRASP1 5'UTR 0.31 TCGA-DM-A285-01 X 102632813 102632813 C A NGFRAP1 3'UTR 0.08 TCGA-DM-A285-01 X 102885088 102885088 C T TCEAL1 Missense_Mutation p.R82C 0.09 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-DM-A285-01 X 103432804 103432804 C G FAM199X Missense_Mutation p.S271R 0.10 tolerated_low_confidence(0.16) probably_damaging(0.983) TCGA-DM-A285-01 X 107224305 107224305 T G TEX13B 3'UTR 0.29 TCGA-DM-A285-01 X 114868373 114868373 C A PLS3 Missense_Mutation p.L188I 0.10 deleterious(0) possibly_damaging(0.725) TCGA-DM-A285-01 X 114953557 114953557 G A RP1-241P17.4 5'UTR 0.43 TCGA-DM-A285-01 X 117695412 117695412 A T DOCK11 Nonsense_Mutation p.K209* 0.06 TCGA-DM-A285-01 X 128927742 128927742 C T SASH3 Silent p.R359R 0.12 TCGA-DM-A285-01 X 130410019 130410019 C T IGSF1 Missense_Mutation p.G943R 0.41 deleterious(0) probably_damaging(0.999) TCGA-DM-A285-01 X 153641559 153641559 G T TAZ Missense_Mutation p.R85L 0.09 deleterious(0.01) possibly_damaging(0.734) TCGA-DM-A285-01 X 29973506 29973506 C T IL1RAPL1 Missense_Mutation p.R554C 0.22 deleterious(0) possibly_damaging(0.85) TCGA-DM-A285-01 X 38535029 38535029 C T TSPAN7 Missense_Mutation p.P171L 0.24 deleterious(0) probably_damaging(0.999) TCGA-DM-A285-01 X 49110472 49110472 G A FOXP3 Silent p.V291V 0.24 TCGA-DM-A285-01 X 57623050 57623050 C T ZXDB 3'UTR 0.16 TCGA-DM-A285-01 X 601787 601787 G A SHOX Missense_Mutation p.V200I 0.08 deleterious(0.04) possibly_damaging(0.64) TCGA-DM-A285-01 X 71715101 71715101 A G HDAC8 Missense_Mutation p.F152S 0.08 deleterious(0.01) possibly_damaging(0.781) TCGA-DM-A285-01 X 75397619 75397619 A G PBDC1 Missense_Mutation p.K193R 0.08 tolerated_low_confidence(0.27) benign(0) TCGA-DM-A285-01 X 92965889 92965889 T A FAM133A 3'UTR 0.06 TCGA-DM-A288-01 10 116879955 116879955 A G ATRNL1 Silent p.T100T 0.26 TCGA-DM-A288-01 10 17147545 17147545 C T CUBN Missense_Mutation p.G381S 0.15 deleterious(0) probably_damaging(0.994) TCGA-DM-A288-01 10 50341918 50341918 C A FAM170B Missense_Mutation p.D16Y 0.32 deleterious(0) possibly_damaging(0.788) TCGA-DM-A288-01 10 82187087 82187087 G A FAM213A Splice_Site p.X138_splice 0.27 TCGA-DM-A288-01 11 119181470 119181470 C A MCAM Nonsense_Mutation p.E597* 0.19 TCGA-DM-A288-01 11 122850087 122850087 C T BSX Missense_Mutation p.R114H 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A288-01 11 17099003 17099003 A G RPS13 Silent p.A15A 0.08 TCGA-DM-A288-01 11 45924624 45924624 C T MAPK8IP1 Missense_Mutation p.R436W 0.56 deleterious(0.01) possibly_damaging(0.65) TCGA-DM-A288-01 11 71806075 71806075 G C LRTOMT 5'UTR 0.70 TCGA-DM-A288-01 11 92533433 92533433 C A FAT3 Silent p.A2418A 0.17 TCGA-DM-A288-01 12 109936125 109936125 A C UBE3B Missense_Mutation p.S303R 0.45 deleterious(0.02) benign(0.1) TCGA-DM-A288-01 12 132195856 132195856 G T SFSWAP Missense_Mutation p.G28C 0.20 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-DM-A288-01 12 133234532 133234532 T C POLE Silent p.Q1100Q 0.10 TCGA-DM-A288-01 12 22778367 22778367 G T ETNK1 Missense_Mutation p.M90I 0.77 deleterious_low_confidence(0.02) benign(0.107) TCGA-DM-A288-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.73 deleterious(0.04) possibly_damaging(0.506) TCGA-DM-A288-01 12 25706106 25706106 G T IFLTD1 5'UTR 0.06 TCGA-DM-A288-01 12 55421208 55421208 T G NEUROD4 Missense_Mutation p.F329V 0.10 deleterious(0) benign(0.059) TCGA-DM-A288-01 13 103387205 103387205 A C CCDC168 Nonsense_Mutation p.L652* 0.58 TCGA-DM-A288-01 13 29600372 29600372 C G MTUS2 Missense_Mutation p.L523V 0.29 tolerated(0.37) benign(0.015) TCGA-DM-A288-01 13 50588259 50588259 T A TRIM13 3'Flank 0.12 TCGA-DM-A288-01 14 101347736 101347736 C T RTL1 Silent p.S1130S 0.29 TCGA-DM-A288-01 14 105418764 105418764 G A AHNAK2 Silent p.F1008F 0.37 TCGA-DM-A288-01 14 106321140 106321140 G A IGHM Silent p.S283S 0.21 TCGA-DM-A288-01 14 50361193 50361193 T G ARF6 3'UTR 0.24 TCGA-DM-A288-01 14 86091450 86091450 C T FLRT2 3'UTR 0.38 TCGA-DM-A288-01 14 94964130 94964130 A C SERPINA12 Missense_Mutation p.M202R 0.37 deleterious(0) probably_damaging(0.942) TCGA-DM-A288-01 15 56394384 56394384 G C RFX7 Missense_Mutation p.H196D 0.19 deleterious(0.03) possibly_damaging(0.487) TCGA-DM-A288-01 15 66857055 66857055 C T LCTL Missense_Mutation p.E81K 0.47 deleterious(0.04) benign(0.033) TCGA-DM-A288-01 15 67477181 67477182 - C SMAD3 Frame_Shift_Ins p.V331Rfs*31 0.29 TCGA-DM-A288-01 15 82450194 82450194 C A EFTUD1 Missense_Mutation p.M630I 0.39 deleterious(0.03) possibly_damaging(0.566) TCGA-DM-A288-01 16 11035730 11035730 A C DEXI Missense_Mutation p.F45V 0.29 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-DM-A288-01 16 12618697 12618697 G A SNX29 Missense_Mutation p.V773I 0.48 tolerated(0.45) benign(0.002) TCGA-DM-A288-01 16 22492351 22492351 G C snoU13 5'Flank 0.12 TCGA-DM-A288-01 16 3901003 3901003 T C CREBBP Silent p.G31G 0.11 TCGA-DM-A288-01 16 50701972 50701972 A G SNX20 3'Flank 0.50 TCGA-DM-A288-01 16 56518522 56518522 A T BBS2 3'UTR 0.18 TCGA-DM-A288-01 16 7645631 7645631 C T RBFOX1 Silent p.G203G 0.07 TCGA-DM-A288-01 17 11684334 11684334 G T DNAH9 Nonsense_Mutation p.E2521* 0.31 TCGA-DM-A288-01 17 48693726 48693726 C T CACNA1G Missense_Mutation p.R1668C 0.55 deleterious(0) probably_damaging(0.982) TCGA-DM-A288-01 17 62149423 62149423 G A ERN1 Silent p.T132T 0.28 TCGA-DM-A288-01 17 68128451 68128451 G C KCNJ16 Missense_Mutation p.V75L 0.16 tolerated(1) benign(0.093) TCGA-DM-A288-01 17 7578532 7578532 A C TP53 Missense_Mutation p.M133R 0.71 deleterious(0) benign(0.226) TCGA-DM-A288-01 18 29111024 29111024 G A DSG2 Silent p.S363S 0.09 TCGA-DM-A288-01 18 42532026 42532026 C T SETBP1 Silent p.S907S 0.12 TCGA-DM-A288-01 18 6859875 6859875 G A ARHGAP28 Silent p.A76A 0.17 TCGA-DM-A288-01 19 12858790 12858790 G A ASNA1 Missense_Mutation p.E307K 0.13 tolerated(0.66) benign(0.008) TCGA-DM-A288-01 19 14705307 14705307 A G CLEC17A Intron 0.65 TCGA-DM-A288-01 19 15648449 15648449 C G CYP4F22 Missense_Mutation p.F175L 0.63 deleterious(0.02) benign(0.393) TCGA-DM-A288-01 19 21366140 21366140 A T ZNF431 Missense_Mutation p.K345I 0.67 deleterious(0.03) probably_damaging(0.996) TCGA-DM-A288-01 19 35941321 35941321 C T FFAR2 Silent p.F235F 0.57 TCGA-DM-A288-01 19 43430074 43430074 G T PSG7 Missense_Mutation p.S365Y 0.17 tolerated(1) possibly_damaging(0.814) TCGA-DM-A288-01 19 53667671 53667671 G A ZNF665 3'UTR 0.55 TCGA-DM-A288-01 19 58016093 58016093 C T ZNF773 Silent p.D34D 0.53 TCGA-DM-A288-01 19 58983219 58983219 C T ZNF324 Missense_Mutation p.R454C 0.08 deleterious(0) probably_damaging(1) TCGA-DM-A288-01 1 1262982 1262982 T C GLTPD1 Missense_Mutation p.F162L 0.08 deleterious(0) possibly_damaging(0.905) TCGA-DM-A288-01 1 175066601 175066601 C G TNN Missense_Mutation p.T546S 0.31 tolerated(0.48) benign(0.084) TCGA-DM-A288-01 1 177133666 177133666 G A ASTN1 Silent p.R49R 0.48 TCGA-DM-A288-01 1 183221678 183221678 C G NMNAT2 3'UTR 0.15 TCGA-DM-A288-01 1 198700825 198700825 T G PTPRC Missense_Mutation p.D648E 0.09 deleterious(0) probably_damaging(0.998) TCGA-DM-A288-01 1 6246659 6246659 C G RPL22 3'UTR 0.51 TCGA-DM-A288-01 20 45816898 45816898 C T EYA2 3'UTR 0.50 TCGA-DM-A288-01 20 61473219 61473219 C T TCFL5 3'UTR 0.48 TCGA-DM-A288-01 20 61909487 61909487 G A ARFGAP1 Silent p.Q154Q 0.46 TCGA-DM-A288-01 20 62729364 62729364 G A OPRL1 Missense_Mutation p.R148H 0.42 deleterious(0) probably_damaging(1) TCGA-DM-A288-01 20 944660 944660 G A RSPO4 Silent p.G171G 0.32 TCGA-DM-A288-01 21 31812843 31812843 T G KRTAP15-1 Silent p.T66T 0.20 TCGA-DM-A288-01 22 24622685 24622685 C T GGT5 Missense_Mutation p.V318M 0.39 tolerated(0.35) benign(0.004) TCGA-DM-A288-01 22 26291140 26291140 C T MYO18B Missense_Mutation p.R1521C 0.68 deleterious(0) probably_damaging(0.979) TCGA-DM-A288-01 22 29191199 29191199 A - XBP1 3'UTR 0.17 TCGA-DM-A288-01 22 38355452 38355452 C T POLR2F Missense_Mutation p.R64C 0.34 deleterious(0) probably_damaging(1) TCGA-DM-A288-01 22 38565311 38565311 T C PLA2G6 Silent p.E41E 0.08 TCGA-DM-A288-01 2 11751122 11751122 C T GREB1 Missense_Mutation p.T992I 0.71 tolerated(0.09) possibly_damaging(0.72) TCGA-DM-A288-01 2 131524401 131524401 G C AMER3 3'UTR 0.30 TCGA-DM-A288-01 2 166909392 166909392 G A SCN1A Nonsense_Mutation p.R222* 0.38 TCGA-DM-A288-01 2 179447135 179447135 G A TTN Silent p.S22016S 0.08 TCGA-DM-A288-01 2 189916146 189916146 C T COL5A2 Missense_Mutation p.R944H 0.49 unknown(0) TCGA-DM-A288-01 2 201994765 201994765 C G CFLAR Silent p.L59L 0.43 TCGA-DM-A288-01 2 203836297 203836297 G A CARF Silent p.L389L 0.43 TCGA-DM-A288-01 2 220116301 220116301 G A TUBA4A Missense_Mutation p.R121W 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.867) TCGA-DM-A288-01 2 242431017 242431017 C A FARP2 Silent p.R904R 0.09 TCGA-DM-A288-01 2 31483480 31483480 G - EHD3 Frame_Shift_Del p.V203Sfs*16 0.17 TCGA-DM-A288-01 2 70165246 70165246 G A MXD1 Missense_Mutation p.V166M 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-DM-A288-01 2 71160262 71160262 G A VAX2 Silent p.S267S 0.53 TCGA-DM-A288-01 2 85766324 85766324 A G MAT2A 5'UTR 0.48 TCGA-DM-A288-01 3 123471302 123471302 G A MYLK Silent p.C83C 0.55 TCGA-DM-A288-01 3 146239682 146239682 C T PLSCR1 Missense_Mutation p.V172I 0.05 tolerated(0.05) benign(0.268) TCGA-DM-A288-01 3 178916891 178916891 G C PIK3CA Missense_Mutation p.R93P 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-DM-A288-01 3 190985975 190985975 C A UTS2B 3'UTR 0.53 TCGA-DM-A288-01 3 194079866 194079866 C T LRRC15 3'UTR 0.33 TCGA-DM-A288-01 3 52265209 52265209 C T TWF2 Silent p.S139S 0.24 TCGA-DM-A288-01 4 118975102 118975102 A G NDST3 Missense_Mutation p.R13G 0.48 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-DM-A288-01 4 156727699 156727699 G C GUCY1B3 3'UTR 0.69 TCGA-DM-A288-01 4 185565842 185565842 C A CASP3 Intron 0.47 TCGA-DM-A288-01 4 48542423 48542423 C T FRYL Missense_Mutation p.S2081N 0.32 tolerated(0.05) probably_damaging(0.997) TCGA-DM-A288-01 4 6107413 6107413 G A JAKMIP1 Silent p.R137R 0.29 TCGA-DM-A288-01 5 112174094 112174095 - A APC Nonsense_Mutation p.Y935* 0.21 TCGA-DM-A288-01 5 112175672 112175672 G - APC Frame_Shift_Del p.E1461Kfs*12 0.46 TCGA-DM-A288-01 5 112175672 112175672 G A APC Missense_Mutation p.E1461K 0.13 benign(0.289) TCGA-DM-A288-01 5 112175677 112175677 G - APC Frame_Shift_Del p.R1463Efs*10 0.47 TCGA-DM-A288-01 5 17275580 17275580 G A BASP1 Silent p.A85A 0.81 TCGA-DM-A288-01 5 1882775 1882775 C T IRX4 5'UTR 0.36 TCGA-DM-A288-01 5 5235165 5235165 G A ADAMTS16 Missense_Mutation p.R630H 0.16 deleterious(0.01) benign(0.444) TCGA-DM-A288-01 6 149700523 149700523 T G TAB2 Missense_Mutation p.L491R 0.14 deleterious(0) probably_damaging(0.999) TCGA-DM-A288-01 6 159636081 159636081 C T FNDC1 Missense_Mutation p.R189C 0.48 deleterious(0) unknown(0) TCGA-DM-A288-01 6 25108865 25108865 C T CMAHP RNA 0.40 TCGA-DM-A288-01 6 26043812 26043812 T C HIST1H2BB Missense_Mutation p.K25R 0.44 deleterious_low_confidence(0.03) benign(0.028) TCGA-DM-A288-01 6 26189053 26189053 G A HIST1H4D Silent p.A84A 0.17 TCGA-DM-A288-01 6 65767515 65767515 G T EYS Missense_Mutation p.P710Q 0.38 tolerated(0.08) benign(0.066) TCGA-DM-A288-01 6 84872884 84872884 C A KIAA1009 Missense_Mutation p.D831Y 0.41 deleterious(0.05) probably_damaging(0.922) TCGA-DM-A288-01 7 1133170 1133170 C T GPER1 3'UTR 0.36 TCGA-DM-A288-01 7 121773788 121773788 C T AASS 5'UTR 0.46 TCGA-DM-A288-01 7 122091467 122091467 C T CADPS2 Missense_Mutation p.R750K 0.06 deleterious(0.04) benign(0.21) TCGA-DM-A288-01 7 142481854 142481854 A C PRSS3P2 RNA 0.36 TCGA-DM-A288-01 7 21550842 21550842 G T SP4 Silent p.S770S 0.26 TCGA-DM-A288-01 7 550556 550556 C T PDGFA Missense_Mutation p.A115T 0.32 deleterious(0) probably_damaging(0.999) TCGA-DM-A288-01 7 73790968 73790968 C T CLIP2 Missense_Mutation p.A746V 0.34 tolerated(0.12) benign(0.231) TCGA-DM-A288-01 7 94051210 94051210 G A COL1A2 Splice_Site p.X784_splice 0.44 TCGA-DM-A288-01 8 57025980 57025980 C T MOS Missense_Mutation p.G188S 0.31 deleterious(0) probably_damaging(1) TCGA-DM-A288-01 8 97172651 97172651 C T GDF6 Silent p.P90P 0.66 TCGA-DM-A288-01 9 108424837 108424837 C T TAL2 Silent p.S20S 0.18 TCGA-DM-A288-01 9 114466261 114466262 - A C9orf84 Frame_Shift_Ins p.S892Ffs*9 0.23 TCGA-DM-A288-01 9 117138783 117138783 G A AKNA Missense_Mutation p.T435M 0.38 deleterious(0) probably_damaging(0.999) TCGA-DM-A288-01 9 120476737 120476737 C A TLR4 Silent p.T777T 0.46 TCGA-DM-A288-01 9 135523856 135523856 T A DDX31 Missense_Mutation p.S380C 0.35 deleterious(0.04) benign(0.111) TCGA-DM-A288-01 9 136262356 136262356 A G C9orf96 Missense_Mutation p.H311R 0.09 tolerated(0.36) benign(0.001) TCGA-DM-A288-01 9 136508610 136508610 G T DBH Missense_Mutation p.D274Y 0.46 deleterious(0.04) benign(0.021) TCGA-DM-A288-01 9 86893146 86893146 G C SLC28A3 Missense_Mutation p.S688C 0.51 deleterious(0) benign(0.31) TCGA-DM-A28A-01 10 105362587 105362587 C G SH3PXD2A Missense_Mutation p.K768N 0.38 deleterious(0.01) benign(0.423) TCGA-DM-A28A-01 10 127782593 127782593 G A ADAM12 Missense_Mutation p.A372V 0.38 deleterious(0.02) benign(0.311) TCGA-DM-A28A-01 10 30336653 30336653 C T KIAA1462 Missense_Mutation p.R30H 0.47 tolerated(0.34) benign(0.021) TCGA-DM-A28A-01 10 35928960 35928960 C T FZD8 Silent p.P466P 0.33 TCGA-DM-A28A-01 10 50374957 50374957 G A C10orf128 Silent p.D65D 0.52 TCGA-DM-A28A-01 10 5204938 5204938 C T AKR1CL1 Missense_Mutation p.V47I 0.35 tolerated(0.12) benign(0.055) TCGA-DM-A28A-01 10 81036971 81036971 G A ZMIZ1 Missense_Mutation p.R105H 0.38 probably_damaging(0.994) TCGA-DM-A28A-01 10 84745206 84745206 C T NRG3 Missense_Mutation p.R646W 0.31 deleterious_low_confidence(0.01) benign(0.235) TCGA-DM-A28A-01 10 98806488 98806488 G T SLIT1 Missense_Mutation p.S592R 0.50 tolerated(0.6) possibly_damaging(0.45) TCGA-DM-A28A-01 11 115046972 115046972 T A CADM1 3'UTR 0.44 TCGA-DM-A28A-01 11 122666901 122666901 G A UBASH3B Missense_Mutation p.R384Q 0.40 deleterious(0.01) possibly_damaging(0.751) TCGA-DM-A28A-01 11 129772329 129772329 G A PRDM10 Missense_Mutation p.P1121L 0.52 deleterious_low_confidence(0) benign(0.033) TCGA-DM-A28A-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.38 TCGA-DM-A28A-01 11 63742117 63742117 C T AP000721.4 5'UTR 0.45 TCGA-DM-A28A-01 11 64877390 64877390 G A VPS51 Missense_Mutation p.V625M 0.53 tolerated(0.18) benign(0.194) TCGA-DM-A28A-01 11 70333017 70333017 G A SHANK2 Silent p.P1128P 0.36 TCGA-DM-A28A-01 12 113445630 113445630 C T OAS2 Missense_Mutation p.R593W 0.51 deleterious(0) probably_damaging(0.993) TCGA-DM-A28A-01 12 119554807 119554807 G A SRRM4 Missense_Mutation p.R144Q 0.44 deleterious_low_confidence(0) unknown(0) TCGA-DM-A28A-01 12 133150910 133150910 T C FBRSL1 Silent p.S530S 0.11 TCGA-DM-A28A-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.39 deleterious(0) benign(0.361) TCGA-DM-A28A-01 12 272707 272707 C T IQSEC3 Silent p.F877F 0.38 TCGA-DM-A28A-01 12 50386431 50386431 T C RACGAP1 Silent p.T449T 0.49 TCGA-DM-A28A-01 12 5155232 5155232 G A KCNA5 3'UTR 0.48 TCGA-DM-A28A-01 12 54795408 54795408 C T ITGA5 Missense_Mutation p.R783Q 0.48 tolerated(0.98) benign(0.002) TCGA-DM-A28A-01 12 57857791 57857791 G T GLI1 Missense_Mutation p.G37V 0.45 tolerated(0.08) benign(0.424) TCGA-DM-A28A-01 12 6230445 6230445 C T VWF Missense_Mutation p.G39R 0.53 deleterious(0) probably_damaging(1) TCGA-DM-A28A-01 12 63225983 63225983 C T PPM1H Missense_Mutation p.G108R 0.47 tolerated(0.22) benign(0.361) TCGA-DM-A28A-01 12 66731877 66731877 A T HELB Missense_Mutation p.T1087S 0.32 tolerated_low_confidence(0.09) benign(0.368) TCGA-DM-A28A-01 12 70931907 70931907 G T PTPRB Intron 0.39 TCGA-DM-A28A-01 12 9845681 9845681 A G CLEC2D Silent p.Q171Q 0.08 TCGA-DM-A28A-01 13 109779873 109779873 C T MYO16 Silent p.S1320S 0.67 TCGA-DM-A28A-01 13 20220807 20220807 G A MPHOSPH8 Silent p.R198R 0.33 TCGA-DM-A28A-01 14 23511559 23511559 A G PSMB11 Missense_Mutation p.H42R 0.15 tolerated(0.15) benign(0.002) TCGA-DM-A28A-01 14 23568472 23568472 T - C14orf119 3'UTR 0.20 TCGA-DM-A28A-01 14 23870077 23870077 G A MYH6 Silent p.S417S 0.50 TCGA-DM-A28A-01 14 26949285 26949285 G T NOVA1 Missense_Mutation p.F115L 0.48 tolerated(0.08) unknown(0) TCGA-DM-A28A-01 14 33291793 33291793 C T AKAP6 Nonsense_Mutation p.R1592* 0.51 TCGA-DM-A28A-01 14 35272177 35272177 C T BAZ1A Silent p.T248T 0.48 TCGA-DM-A28A-01 14 70714489 70714489 C T ADAM21P1 RNA 0.39 TCGA-DM-A28A-01 14 96792191 96792191 T - ATG2B Frame_Shift_Del p.V745Lfs*6 0.29 TCGA-DM-A28A-01 15 22382501 22382501 C T OR4N4 Missense_Mutation p.T10I 0.17 deleterious(0.01) benign(0.424) TCGA-DM-A28A-01 15 22383318 22383318 G T OR4N4 Missense_Mutation p.M282I 0.26 deleterious(0.01) benign(0.064) TCGA-DM-A28A-01 15 49528104 49528104 A G GALK2 Missense_Mutation p.H108R 0.39 tolerated(0.14) possibly_damaging(0.65) TCGA-DM-A28A-01 15 82551443 82551443 G A EFTUD1 Missense_Mutation p.R49C 0.53 deleterious(0) probably_damaging(0.993) TCGA-DM-A28A-01 15 93588794 93588794 C T RGMA Missense_Mutation p.E271K 0.64 deleterious(0) probably_damaging(0.978) TCGA-DM-A28A-01 16 27079498 27079498 G T C16orf82 RNA 0.23 TCGA-DM-A28A-01 16 31418980 31418980 C T ITGAD Silent p.Y283Y 0.37 TCGA-DM-A28A-01 16 3490833 3490833 T A ZNF597 Missense_Mutation p.E45V 0.35 deleterious(0) probably_damaging(0.983) TCGA-DM-A28A-01 16 56518732 56518732 G A BBS2 Nonsense_Mutation p.R703* 0.42 TCGA-DM-A28A-01 16 67322096 67322096 G A PLEKHG4 Missense_Mutation p.V1083I 0.24 deleterious(0) possibly_damaging(0.613) TCGA-DM-A28A-01 16 68405943 68405943 G A SMPD3 Missense_Mutation p.R48W 0.48 deleterious(0.02) benign(0.022) TCGA-DM-A28A-01 16 774134 774134 A G CCDC78 Missense_Mutation p.V342A 0.10 tolerated(0.63) benign(0.008) TCGA-DM-A28A-01 16 80638236 80638236 C T CDYL2 3'UTR 0.21 TCGA-DM-A28A-01 16 81968117 81968117 C A PLCG2 Missense_Mutation p.S941R 0.38 tolerated(0.18) possibly_damaging(0.907) TCGA-DM-A28A-01 16 89831446 89831446 G T FANCA Nonsense_Mutation p.S877* 0.19 TCGA-DM-A28A-01 17 18604705 18604705 G A TRIM16L 5'UTR 0.73 TCGA-DM-A28A-01 17 19866206 19866206 G A AKAP10 Missense_Mutation p.A89V 0.66 tolerated_low_confidence(0.1) probably_damaging(0.996) TCGA-DM-A28A-01 17 21320241 21320241 C A KCNJ12 3'UTR 0.22 TCGA-DM-A28A-01 17 3495424 3495424 G A TRPV1 Missense_Mutation p.P74L 0.73 deleterious(0) probably_damaging(0.922) TCGA-DM-A28A-01 17 60650692 60650692 A G TLK2 Missense_Mutation p.Q362R 0.37 tolerated(0.14) benign(0.012) TCGA-DM-A28A-01 17 7121590 7121590 G T DLG4 Missense_Mutation p.D43E 0.69 tolerated(1) benign(0.008) TCGA-DM-A28A-01 17 74063398 74063398 G A SRP68 Missense_Mutation p.R89C 0.40 deleterious(0) probably_damaging(0.959) TCGA-DM-A28A-01 17 74133821 74133821 C T FOXJ1 Silent p.L293L 0.09 TCGA-DM-A28A-01 17 7579321 7579322 CA - TP53 Frame_Shift_Del p.V122Dfs*26 0.49 TCGA-DM-A28A-01 17 8018345 8018345 G A ALOXE3 Silent p.C287C 0.78 TCGA-DM-A28A-01 17 8194679 8194679 G A SLC25A35 Missense_Mutation p.S189F 0.64 tolerated(0.7) probably_damaging(0.988) TCGA-DM-A28A-01 18 10472044 10472044 C A APCDD1 Missense_Mutation p.L254M 0.80 deleterious(0.04) probably_damaging(1) TCGA-DM-A28A-01 18 59947906 59947906 C G KIAA1468 Silent p.A1026A 0.82 TCGA-DM-A28A-01 18 74980775 74980775 C A GALR1 Missense_Mutation p.R323S 0.14 tolerated(0.79) benign(0.002) TCGA-DM-A28A-01 19 10441188 10441188 C A RAVER1 Silent p.L95L 0.15 TCGA-DM-A28A-01 19 16653169 16653169 G A CHERP Silent p.P7P 0.31 TCGA-DM-A28A-01 19 33697087 33697087 A T LRP3 Missense_Mutation p.T471S 0.60 tolerated(0.64) probably_damaging(0.992) TCGA-DM-A28A-01 19 48058935 48058935 G A ZNF541 Missense_Mutation p.T60M 0.35 deleterious(0.04) benign(0.068) TCGA-DM-A28A-01 19 49339618 49339618 G T HSD17B14 Silent p.G17G 0.50 TCGA-DM-A28A-01 19 49842154 49842154 C T CD37 Silent p.D215D 0.38 TCGA-DM-A28A-01 19 50365974 50365974 A G PNKP Missense_Mutation p.S280P 0.11 deleterious(0.01) possibly_damaging(0.565) TCGA-DM-A28A-01 19 50713817 50713817 C T MYH14 Silent p.F65F 0.47 TCGA-DM-A28A-01 19 51470547 51470547 G A KLK6 Silent p.G25G 0.45 TCGA-DM-A28A-01 19 52249615 52249615 G A FPR1 Silent p.S211S 0.41 TCGA-DM-A28A-01 19 52328091 52328091 C T FPR3 3'UTR 0.11 TCGA-DM-A28A-01 19 55857621 55857621 T C SUV420H2 Missense_Mutation p.L204P 0.13 deleterious(0) probably_damaging(0.988) TCGA-DM-A28A-01 19 9084340 9084340 C G MUC16 Missense_Mutation p.S2492T 0.35 unknown(0) TCGA-DM-A28A-01 1 109566020 109566020 C T WDR47 Missense_Mutation p.G39R 0.69 deleterious(0) probably_damaging(0.999) TCGA-DM-A28A-01 1 12907861 12907861 G A HNRNPCL1 Silent p.N94N 0.17 TCGA-DM-A28A-01 1 145015939 145015939 G A RP11-326G21.1 5'Flank 0.16 TCGA-DM-A28A-01 1 151679641 151679641 T C CELF3 Missense_Mutation p.N301S 0.43 tolerated(0.09) benign(0.006) TCGA-DM-A28A-01 1 154841790 154841790 C T KCNN3 Silent p.P217P 0.40 TCGA-DM-A28A-01 1 156280743 156280743 G A CCT3 Missense_Mutation p.R467W 0.36 deleterious(0) benign(0.101) TCGA-DM-A28A-01 1 158262062 158262062 G A CD1C Missense_Mutation p.V173I 0.45 tolerated(1) benign(0) TCGA-DM-A28A-01 1 162366923 162366923 G T SH2D1B 3'UTR 0.48 TCGA-DM-A28A-01 1 174517244 174517244 G T RABGAP1L Intron 0.49 TCGA-DM-A28A-01 1 183191287 183191287 G A LAMC2 Missense_Mutation p.R235H 0.46 tolerated(0.24) benign(0.052) TCGA-DM-A28A-01 1 18809503 18809503 C T KLHDC7A Silent p.N676N 0.68 TCGA-DM-A28A-01 1 19481534 19481534 G A UBR4 Silent p.S2112S 0.73 TCGA-DM-A28A-01 1 228362554 228362554 A G IBA57 Missense_Mutation p.E168G 0.38 tolerated(0.25) benign(0.038) TCGA-DM-A28A-01 1 228474615 228474615 G T OBSCN Missense_Mutation p.R3569L 0.34 probably_damaging(0.941) TCGA-DM-A28A-01 1 233122243 233122243 C T PCNXL2 Silent p.A1945A 0.48 TCGA-DM-A28A-01 1 245852043 245852043 G A KIF26B Missense_Mutation p.E1920K 0.44 deleterious(0.01) unknown(0) TCGA-DM-A28A-01 1 62190734 62190734 A T TM2D1 Missense_Mutation p.V82D 0.86 deleterious(0) benign(0.014) TCGA-DM-A28A-01 1 7700583 7700583 G T CAMTA1 Nonsense_Mutation p.E212* 0.24 TCGA-DM-A28A-01 20 13845845 13845845 G A SEL1L2 Missense_Mutation p.R483C 0.45 deleterious_low_confidence(0.03) benign(0.002) TCGA-DM-A28A-01 20 31600613 31600613 C T BPIFB2 Missense_Mutation p.R70W 0.30 deleterious(0.01) possibly_damaging(0.759) TCGA-DM-A28A-01 20 41306699 41306699 G T PTPRT Silent p.I320I 0.29 TCGA-DM-A28A-01 20 54824663 54824663 G T MC3R Missense_Mutation p.W255L 0.11 deleterious(0) probably_damaging(1) TCGA-DM-A28A-01 20 60921794 60921794 C T LAMA5 Missense_Mutation p.A379T 0.90 probably_damaging(0.934) TCGA-DM-A28A-01 21 43824062 43824062 C T UBASH3A Missense_Mutation p.A3V 0.40 tolerated(0.28) benign(0.089) TCGA-DM-A28A-01 22 20132833 20132833 C - ZDHHC8 Intron 0.25 TCGA-DM-A28A-01 22 43023311 43023311 T C CYB5R3 Missense_Mutation p.Q244R 0.86 tolerated(0.24) probably_damaging(0.98) TCGA-DM-A28A-01 22 50483810 50483810 G A TTLL8 Missense_Mutation p.R209W 0.79 tolerated(0.25) probably_damaging(0.964) TCGA-DM-A28A-01 2 131798882 131798882 T C ARHGEF4 Missense_Mutation p.L395P 0.08 tolerated(0.2) probably_damaging(0.953) TCGA-DM-A28A-01 2 137928498 137928498 G C THSD7B Missense_Mutation p.Q571H 0.38 tolerated(0.11) benign(0.387) TCGA-DM-A28A-01 2 144704667 144704667 A T GTDC1 Missense_Mutation p.H443Q 0.45 tolerated(0.5) benign(0.157) TCGA-DM-A28A-01 2 163133985 163133985 C T IFIH1 Missense_Mutation p.D662N 0.48 tolerated(0.35) benign(0.008) TCGA-DM-A28A-01 2 196605504 196605504 C G DNAH7 Missense_Mutation p.D3952H 0.23 deleterious(0) probably_damaging(0.997) TCGA-DM-A28A-01 2 204591623 204591623 C A CD28 Missense_Mutation p.T107K 0.60 deleterious(0) probably_damaging(1) TCGA-DM-A28A-01 2 210681773 210681773 C A UNC80 Missense_Mutation p.F492L 0.15 possibly_damaging(0.68) TCGA-DM-A28A-01 2 5836113 5836113 G T SOX11 3'UTR 0.35 TCGA-DM-A28A-01 2 95515040 95515040 G T RNU6-1320P 5'Flank 0.13 TCGA-DM-A28A-01 3 100565216 100565216 C A ABI3BP Missense_Mutation p.A533S 0.20 deleterious(0.03) possibly_damaging(0.584) TCGA-DM-A28A-01 3 112993333 112993333 C A BOC Missense_Mutation p.P449H 0.51 deleterious(0.02) benign(0.39) TCGA-DM-A28A-01 3 121981014 121981014 G A CASR Missense_Mutation p.E378K 0.31 tolerated(0.38) benign(0.006) TCGA-DM-A28A-01 3 1269664 1269664 G T CNTN6 Missense_Mutation p.K115N 0.28 tolerated(0.11) possibly_damaging(0.796) TCGA-DM-A28A-01 3 127788446 127788446 T C SEC61A1 Missense_Mutation p.F458L 0.09 tolerated(0.12) benign(0.026) TCGA-DM-A28A-01 3 14509659 14509659 T C SLC6A6 Silent p.F345F 0.34 TCGA-DM-A28A-01 3 154139158 154139158 C A GPR149 Missense_Mutation p.M431I 0.35 tolerated(0.22) benign(0.008) TCGA-DM-A28A-01 3 156746037 156746037 C T LEKR1 Missense_Mutation p.A505V 0.51 deleterious(0.05) possibly_damaging(0.682) TCGA-DM-A28A-01 3 178921549 178921549 T G PIK3CA Missense_Mutation p.V344G 0.33 deleterious(0) probably_damaging(0.987) TCGA-DM-A28A-01 3 178952084 178952084 C T PIK3CA Missense_Mutation p.H1047Y 0.51 tolerated(1) benign(0.008) TCGA-DM-A28A-01 3 180327432 180327432 G T TTC14 Missense_Mutation p.R472I 0.45 deleterious(0.01) unknown(0) TCGA-DM-A28A-01 3 185393135 185393135 C G IGF2BP2 Missense_Mutation p.E340D 0.49 deleterious(0.03) probably_damaging(0.998) TCGA-DM-A28A-01 3 187009546 187009546 G T MASP1 5'UTR 0.61 TCGA-DM-A28A-01 3 38592736 38592736 C T SCN5A Silent p.T1709T 0.43 TCGA-DM-A28A-01 3 57843845 57843845 C T SLMAP Missense_Mutation p.R216W 0.42 deleterious(0.03) probably_damaging(1) TCGA-DM-A28A-01 3 58510167 58510167 T C ACOX2 Silent p.A504A 0.09 TCGA-DM-A28A-01 4 139093062 139093062 T G SLC7A11 3'UTR 0.71 TCGA-DM-A28A-01 4 162841654 162841654 T C FSTL5 Missense_Mutation p.D104G 0.28 deleterious(0) probably_damaging(0.996) TCGA-DM-A28A-01 4 17598729 17598729 T C LAP3 Missense_Mutation p.V350A 0.45 deleterious(0.02) possibly_damaging(0.721) TCGA-DM-A28A-01 4 17616372 17616372 C A MED28 Missense_Mutation p.A32E 0.59 tolerated(0.05) benign(0.051) TCGA-DM-A28A-01 4 41992775 41992775 A G SLC30A9 Missense_Mutation p.Q36R 0.44 tolerated_low_confidence(0.36) benign(0) TCGA-DM-A28A-01 4 48559540 48559540 C T FRYL Missense_Mutation p.R1352Q 0.33 deleterious(0.01) benign(0.23) TCGA-DM-A28A-01 4 54292110 54292110 C A FIP1L1 Missense_Mutation p.A332E 0.06 tolerated(0.34) possibly_damaging(0.76) TCGA-DM-A28A-01 4 69056820 69056820 C G TMPRSS11BNL 3'UTR 0.19 TCGA-DM-A28A-01 4 76891487 76891487 G C SDAD1 Silent p.A286A 0.82 TCGA-DM-A28A-01 5 112170780 112170783 ACAA - APC Frame_Shift_Del p.N627Lfs*2 0.63 TCGA-DM-A28A-01 5 118176658 118176658 C T DTWD2 Missense_Mutation p.R284H 0.30 tolerated(0.11) benign(0.04) TCGA-DM-A28A-01 5 140188640 140188640 G A PCDHA4 Missense_Mutation p.R623H 0.78 deleterious_low_confidence(0.01) benign(0.075) TCGA-DM-A28A-01 5 149447844 149447844 G A CSF1R Silent p.V520V 0.50 TCGA-DM-A28A-01 5 170343484 170343484 G C RANBP17 Missense_Mutation p.V284L 0.42 deleterious(0) probably_damaging(0.984) TCGA-DM-A28A-01 5 42718556 42718556 A G GHR Missense_Mutation p.E316G 0.10 deleterious(0) probably_damaging(0.998) TCGA-DM-A28A-01 5 43653140 43653140 T C NNT Silent p.G628G 0.09 TCGA-DM-A28A-01 5 44305112 44305112 C A FGF10 Missense_Mutation p.M204I 0.40 tolerated(0.56) benign(0) TCGA-DM-A28A-01 5 80628421 80628421 G A ACOT12 Silent p.S422S 0.83 TCGA-DM-A28A-01 6 10935330 10935330 C A SYCP2L Missense_Mutation p.Q575K 0.44 tolerated(0.61) benign(0.134) TCGA-DM-A28A-01 6 110088058 110088058 C A FIG4 Silent p.I570I 0.36 TCGA-DM-A28A-01 6 12125846 12125846 A G HIVEP1 Missense_Mutation p.T1940A 0.40 deleterious(0) probably_damaging(0.993) TCGA-DM-A28A-01 6 152706918 152706918 G A SYNE1 Missense_Mutation p.A2848V 0.42 probably_damaging(0.998) TCGA-DM-A28A-01 6 159052956 159052956 G T TMEM181 3'UTR 0.44 TCGA-DM-A28A-01 6 161502051 161502051 C T MAP3K4 Nonsense_Mutation p.Q746* 0.48 TCGA-DM-A28A-01 6 26124118 26124118 G C HIST1H2BC Silent p.A5A 0.44 TCGA-DM-A28A-01 6 28971903 28971903 G A ZNF311 5'UTR 0.42 TCGA-DM-A28A-01 6 30139964 30139964 G A TRIM15 Silent p.P412P 0.64 TCGA-DM-A28A-01 6 38893841 38893841 G T DNAH8 Missense_Mutation p.W3441L 0.38 probably_damaging(1) TCGA-DM-A28A-01 6 44222887 44222889 GGT - SLC35B2 In_Frame_Del p.T285del 0.35 TCGA-DM-A28A-01 6 70049228 70049228 G A BAI3 Silent p.A1097A 0.42 TCGA-DM-A28A-01 6 90461198 90461198 G A MDN1 Missense_Mutation p.S1060F 0.30 possibly_damaging(0.781) TCGA-DM-A28A-01 7 100486658 100486658 C T UFSP1 Missense_Mutation p.V79I 0.38 tolerated(0.24) benign(0.002) TCGA-DM-A28A-01 7 142573334 142573334 G T TRPV6 Missense_Mutation p.L337M 0.31 tolerated(0.06) benign(0.025) TCGA-DM-A28A-01 7 149493478 149493478 A G SSPO RNA 0.11 TCGA-DM-A28A-01 7 152513626 152513626 G T ACTR3B Missense_Mutation p.G165W 0.18 deleterious(0) probably_damaging(1) TCGA-DM-A28A-01 7 156759764 156759764 C T NOM1 Missense_Mutation p.S759L 0.43 deleterious(0.02) probably_damaging(0.913) TCGA-DM-A28A-01 7 1589961 1589961 C A TMEM184A Missense_Mutation p.E152D 0.29 deleterious(0.02) possibly_damaging(0.574) TCGA-DM-A28A-01 7 23768866 23768866 C G STK31 Missense_Mutation p.Q161E 0.34 tolerated(0.07) benign(0.134) TCGA-DM-A28A-01 7 26224787 26224787 C T NFE2L3 Missense_Mutation p.T490I 0.49 tolerated(0.17) benign(0.073) TCGA-DM-A28A-01 7 2976713 2976713 G T CARD11 Missense_Mutation p.S433R 0.33 deleterious(0.01) possibly_damaging(0.555) TCGA-DM-A28A-01 7 73107681 73107681 C T WBSCR22 Missense_Mutation p.A178V 0.37 deleterious(0) probably_damaging(0.997) TCGA-DM-A28A-01 7 94038678 94038678 C T COL1A2 Silent p.A279A 0.41 TCGA-DM-A28A-01 8 110986343 110986343 T C KCNV1 Missense_Mutation p.D92G 0.08 deleterious(0) probably_damaging(0.999) TCGA-DM-A28A-01 8 140630702 140630702 G A KCNK9 Silent p.G308G 0.22 TCGA-DM-A28A-01 8 145623303 145623303 C T CPSF1 Missense_Mutation p.V647M 0.31 deleterious(0.03) probably_damaging(0.992) TCGA-DM-A28A-01 8 22995445 22995445 C A TNFRSF10D Missense_Mutation p.V367L 0.68 deleterious_low_confidence(0) benign(0.086) TCGA-DM-A28A-01 8 42587122 42587122 G A CHRNB3 Silent p.T224T 0.76 TCGA-DM-A28A-01 8 72756083 72756083 C T MSC Missense_Mutation p.A111T 0.37 deleterious(0) probably_damaging(1) TCGA-DM-A28A-01 8 97157113 97157113 T C GDF6 Missense_Mutation p.K349R 0.08 tolerated(0.05) benign(0.217) TCGA-DM-A28A-01 9 115613217 115613217 C T SNX30 Missense_Mutation p.R365C 0.31 tolerated(0.07) benign(0.03) TCGA-DM-A28A-01 9 116356778 116356778 C T RGS3 Missense_Mutation p.A1050V 0.42 tolerated(0.07) benign(0.052) TCGA-DM-A28A-01 9 117051006 117051006 C T COL27A1 Missense_Mutation p.R1357C 0.52 unknown(0) TCGA-DM-A28A-01 9 123636994 123636994 C T PHF19 Missense_Mutation p.G9E 0.11 tolerated_low_confidence(0.27) benign(0.001) TCGA-DM-A28A-01 9 131568248 131568248 C T TBC1D13 Silent p.A343A 0.65 TCGA-DM-A28A-01 9 139651559 139651559 G A LCN8 Missense_Mutation p.P29L 0.22 deleterious(0.02) benign(0.163) TCGA-DM-A28A-01 9 140476990 140476990 G T ZMYND19 3'UTR 0.21 TCGA-DM-A28A-01 9 34552247 34552247 C T CNTFR Missense_Mutation p.G344R 0.33 tolerated_low_confidence(0.24) benign(0.144) TCGA-DM-A28A-01 9 75387328 75387328 G T TMC1 Splice_Site p.X248_splice 0.07 TCGA-DM-A28A-01 X 12632959 12632959 G A FRMPD4 Silent p.P127P 0.91 TCGA-DM-A28A-01 X 132161364 132161364 G A USP26 Silent p.H295H 0.84 TCGA-DM-A28A-01 X 153580607 153580607 T C FLNA Silent p.G2237G 0.11 TCGA-DM-A28A-01 X 224541 224541 T C GTPBP6 Missense_Mutation p.I149V 0.13 tolerated(0.2) benign(0.168) TCGA-DM-A28A-01 X 34148815 34148815 C T FAM47A Silent p.T527T 0.94 TCGA-DM-A28A-01 X 50089776 50089776 C T CCNB3 Silent p.I1260I 0.10 TCGA-DM-A28C-01 10 100022608 100022608 C T LOXL4 Missense_Mutation p.V57M 0.42 deleterious(0) probably_damaging(0.993) TCGA-DM-A28C-01 10 120801892 120801892 C T EIF3A Missense_Mutation p.G1047E 0.50 deleterious(0.03) possibly_damaging(0.881) TCGA-DM-A28C-01 10 126495444 126495444 C T FAM175B Silent p.S39S 0.41 TCGA-DM-A28C-01 10 134738219 134738219 C T TTC40 Missense_Mutation p.V413M 0.41 tolerated(0.06) benign(0.113) TCGA-DM-A28C-01 10 45602534 45602534 G T RSU1P2 RNA 0.39 TCGA-DM-A28C-01 10 75410676 75410676 C T SYNPO2L Intron 0.39 TCGA-DM-A28C-01 10 79581222 79581222 G A DLG5 Missense_Mutation p.A1007V 0.29 tolerated(0.28) benign(0) TCGA-DM-A28C-01 10 89720744 89720744 G T PTEN Nonsense_Mutation p.E299* 0.41 TCGA-DM-A28C-01 11 118272202 118272202 G A ATP5L 5'UTR 0.57 TCGA-DM-A28C-01 11 120998520 120998520 G A TECTA Missense_Mutation p.D612N 0.56 tolerated(0.42) benign(0.086) TCGA-DM-A28C-01 11 126120458 126120458 G C FAM118B Missense_Mutation p.D133H 0.36 deleterious(0.03) possibly_damaging(0.647) TCGA-DM-A28C-01 11 1629483 1629483 C T KRTAP5-3 Missense_Mutation p.V45M 0.36 tolerated(0.17) unknown(0) TCGA-DM-A28C-01 11 30432970 30432970 C A MPPED2 3'UTR 0.21 TCGA-DM-A28C-01 11 46565568 46565568 C A AMBRA1 Missense_Mutation p.G192V 0.40 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-DM-A28C-01 11 46565569 46565569 C A AMBRA1 Nonsense_Mutation p.G192* 0.39 TCGA-DM-A28C-01 11 55872537 55872537 A G OR8H2 Missense_Mutation p.N7D 0.36 tolerated(0.24) benign(0.003) TCGA-DM-A28C-01 11 55872565 55872565 T C OR8H2 Missense_Mutation p.M16T 0.39 tolerated(0.11) benign(0.001) TCGA-DM-A28C-01 11 68337366 68337366 G A PPP6R3 Splice_Site p.X426_splice 0.40 TCGA-DM-A28C-01 11 7718301 7718301 T C OVCH2 Missense_Mutation p.K324R 0.12 tolerated(0.12) benign(0.047) TCGA-DM-A28C-01 11 82892089 82892089 T C PCF11 Silent p.I1341I 0.10 TCGA-DM-A28C-01 12 105151191 105151191 C T CHST11 Silent p.N223N 0.09 TCGA-DM-A28C-01 12 133433133 133433133 G A CHFR Missense_Mutation p.R396W 0.43 deleterious(0) probably_damaging(0.987) TCGA-DM-A28C-01 12 45004635 45004635 G T NELL2 Nonsense_Mutation p.C571* 0.46 TCGA-DM-A28C-01 12 57883116 57883116 G A MARS Silent p.A89A 0.37 TCGA-DM-A28C-01 13 48985900 48985900 G A LPAR6 Silent p.S220S 0.36 TCGA-DM-A28C-01 13 53007825 53007826 - T VPS36 Frame_Shift_Ins p.R167Kfs*5 0.28 TCGA-DM-A28C-01 14 20404502 20404502 G A OR4K1 Missense_Mutation p.R226Q 0.28 tolerated(0.41) benign(0.005) TCGA-DM-A28C-01 14 23884924 23884924 C T MYH7 Missense_Mutation p.V1691M 0.42 deleterious(0.05) benign(0.01) TCGA-DM-A28C-01 14 72085510 72085510 G C SIPA1L1 Missense_Mutation p.G512A 0.45 deleterious(0) possibly_damaging(0.875) TCGA-DM-A28C-01 14 79434626 79434626 C T NRXN3 Missense_Mutation p.R654C 0.36 deleterious(0) probably_damaging(0.979) TCGA-DM-A28C-01 14 94712791 94712791 A C PPP4R4 Missense_Mutation p.K509T 0.41 tolerated(0.06) benign(0.009) TCGA-DM-A28C-01 14 95560476 95560476 C G DICER1 Missense_Mutation p.E1705Q 0.61 deleterious(0) probably_damaging(0.999) TCGA-DM-A28C-01 15 28493767 28493767 G A HERC2 Missense_Mutation p.R1056C 0.24 possibly_damaging(0.854) TCGA-DM-A28C-01 15 42386727 42386727 G A PLA2G4D 5'UTR 0.42 TCGA-DM-A28C-01 15 94888377 94888377 G A MCTP2 Missense_Mutation p.R330Q 0.35 tolerated(0.17) benign(0.004) TCGA-DM-A28C-01 16 31091718 31091718 G A ZNF646 Missense_Mutation p.R1358Q 0.41 tolerated_low_confidence(0.24) probably_damaging(0.992) TCGA-DM-A28C-01 16 55806385 55806385 C A CES1P1 RNA 0.47 TCGA-DM-A28C-01 17 42399804 42399804 G A SLC25A39 Missense_Mutation p.R103C 0.40 tolerated(0.05) possibly_damaging(0.766) TCGA-DM-A28C-01 17 45901769 45901769 C T MRPL10 Silent p.K206K 0.27 TCGA-DM-A28C-01 17 46671036 46671036 C T HOXB5 Silent p.S3S 0.50 TCGA-DM-A28C-01 17 60650579 60650579 A T TLK2 Missense_Mutation p.Q324H 0.37 tolerated(0.23) benign(0.067) TCGA-DM-A28C-01 17 7287871 7287871 C T TNK1 Missense_Mutation p.T312M 0.32 deleterious(0) probably_damaging(1) TCGA-DM-A28C-01 18 3456403 3456418 TTCCCTTGGACCTTTC - TGIF1 Frame_Shift_Del p.P153Hfs*70 0.36 TCGA-DM-A28C-01 19 15562668 15562668 G A RASAL3 Missense_Mutation p.R992W 0.68 deleterious_low_confidence(0) benign(0) TCGA-DM-A28C-01 19 17417128 17417128 G A MRPL34 Silent p.P73P 0.50 TCGA-DM-A28C-01 19 22156917 22156917 G T ZNF208 Missense_Mutation p.H307N 0.76 deleterious(0.04) probably_damaging(0.994) TCGA-DM-A28C-01 19 41122907 41122907 G A LTBP4 Silent p.T1042T 0.25 TCGA-DM-A28C-01 19 41201940 41201940 C T ADCK4 Missense_Mutation p.G388D 0.44 deleterious(0) probably_damaging(0.915) TCGA-DM-A28C-01 19 43699197 43699197 C T PSG4 Missense_Mutation p.R313Q 0.50 tolerated(0.29) possibly_damaging(0.553) TCGA-DM-A28C-01 19 4558069 4558069 G A SEMA6B Missense_Mutation p.R72W 0.32 deleterious(0.01) probably_damaging(0.974) TCGA-DM-A28C-01 19 51021938 51021938 G A LRRC4B Silent p.A344A 0.49 TCGA-DM-A28C-01 19 9074936 9074936 C T MUC16 Silent p.S4170S 0.43 TCGA-DM-A28C-01 1 100154567 100154567 T C PALMD Missense_Mutation p.S251P 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-DM-A28C-01 1 147380982 147380982 C T GJA8 Silent p.F300F 0.70 TCGA-DM-A28C-01 1 158324176 158324176 C A CD1E Missense_Mutation p.A23D 0.22 tolerated(0.35) benign(0.444) TCGA-DM-A28C-01 1 160535332 160535332 G A CD84 Missense_Mutation p.R84W 0.21 deleterious(0) probably_damaging(1) TCGA-DM-A28C-01 1 161681140 161681140 C A FCRLA Missense_Mutation p.N148K 0.13 tolerated(0.23) benign(0.02) TCGA-DM-A28C-01 1 168282020 168282020 G - TBX19 Frame_Shift_Del p.S376Tfs*13 0.12 TCGA-DM-A28C-01 1 175914116 175914116 C T RFWD2 3'UTR 0.66 TCGA-DM-A28C-01 1 179989590 179989595 AGAAGA - CEP350 In_Frame_Del p.Q894_M896delinsL 0.69 TCGA-DM-A28C-01 1 203797461 203797461 A G ZC3H11A Missense_Mutation p.N70S 0.70 tolerated(0.07) benign(0.395) TCGA-DM-A28C-01 1 204951130 204951130 G A NFASC Missense_Mutation p.G818S 0.24 deleterious(0) probably_damaging(0.999) TCGA-DM-A28C-01 1 215408192 215408192 G A KCNK2 Missense_Mutation p.A329T 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A28C-01 1 228444454 228444454 C T OBSCN Missense_Mutation p.T1563M 0.67 probably_damaging(0.998) TCGA-DM-A28C-01 1 47505032 47505032 T C CYP4X1 Missense_Mutation p.F301L 0.11 tolerated(1) benign(0.198) TCGA-DM-A28C-01 1 93682280 93682280 G C CCDC18 Missense_Mutation p.A656P 0.53 deleterious(0.02) possibly_damaging(0.851) TCGA-DM-A28C-01 20 23065821 23065821 C T CD93 Missense_Mutation p.D337N 0.29 tolerated(0.26) benign(0.395) TCGA-DM-A28C-01 20 400074 400074 G A RBCK1 Missense_Mutation p.G182R 0.48 tolerated(0.51) benign(0.073) TCGA-DM-A28C-01 20 422455 422455 G A TBC1D20 Intron 0.40 TCGA-DM-A28C-01 20 4708858 4708858 G C PRND 3'UTR 0.44 TCGA-DM-A28C-01 20 60791910 60791910 A G HRH3 Missense_Mutation p.F164L 0.09 deleterious(0) probably_damaging(0.992) TCGA-DM-A28C-01 21 47581598 47581598 C T SPATC1L Missense_Mutation p.G240S 0.45 deleterious(0.05) benign(0.333) TCGA-DM-A28C-01 22 23915474 23915474 C T IGLL1 Silent p.V207V 0.39 TCGA-DM-A28C-01 22 24145587 24145587 C T SMARCB1 Silent p.D202D 0.59 TCGA-DM-A28C-01 22 26694982 26694982 C A SEZ6L Missense_Mutation p.P399T 0.42 deleterious(0) probably_damaging(1) TCGA-DM-A28C-01 22 50967569 50967569 C A TYMP Missense_Mutation p.C138F 0.25 tolerated(0.11) benign(0.394) TCGA-DM-A28C-01 2 145146478 145146478 C A ZEB2 3'UTR 0.36 TCGA-DM-A28C-01 2 167992561 167992561 G A XIRP2 Missense_Mutation p.R184H 0.60 benign(0) TCGA-DM-A28C-01 2 174774613 174774613 T C SP3 3'UTR 0.37 TCGA-DM-A28C-01 2 17906564 17906564 G A SMC6 Missense_Mutation p.T229M 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-DM-A28C-01 2 185802563 185802563 C T ZNF804A Nonsense_Mutation p.R814* 0.36 TCGA-DM-A28C-01 2 211476925 211476925 C T CPS1 Missense_Mutation p.R832C 0.63 tolerated(0.15) benign(0.01) TCGA-DM-A28C-01 2 242170237 242170237 G A HDLBP Silent p.R1137R 0.47 TCGA-DM-A28C-01 2 242716310 242716310 C A GAL3ST2 5'UTR 0.32 TCGA-DM-A28C-01 2 56098163 56098163 G C EFEMP1 Missense_Mutation p.Q366E 0.44 tolerated(0.56) benign(0.002) TCGA-DM-A28C-01 2 73957123 73957123 C T TPRKB Missense_Mutation p.G159R 0.34 tolerated(0.07) probably_damaging(0.991) TCGA-DM-A28C-01 2 79363897 79363897 G C REG1P RNA 0.56 TCGA-DM-A28C-01 2 96781595 96781595 C A ADRA2B Silent p.S98S 0.40 TCGA-DM-A28C-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.45 deleterious(0.02) probably_damaging(0.959) TCGA-DM-A28C-01 3 181430349 181430349 C A SOX2 Missense_Mutation p.H67Q 0.36 deleterious(0) probably_damaging(0.954) TCGA-DM-A28C-01 3 186917761 186917761 C A RTP1 Nonsense_Mutation p.S232* 0.48 TCGA-DM-A28C-01 3 64518909 64518909 G - ADAMTS9 Frame_Shift_Del p.S1884Ffs*2 0.31 TCGA-DM-A28C-01 4 1246127 1246127 A G CTBP1 5'Flank 0.50 TCGA-DM-A28C-01 4 126240997 126240997 C A FAT4 Missense_Mutation p.P1144Q 0.33 benign(0.262) TCGA-DM-A28C-01 4 177098790 177098790 G A WDR17 Silent p.T1278T 0.44 TCGA-DM-A28C-01 4 20530579 20530579 A G SLIT2 Silent p.E490E 0.35 TCGA-DM-A28C-01 4 40104739 40104739 C - N4BP2 Frame_Shift_Del p.P426Qfs*6 0.26 TCGA-DM-A28C-01 4 47898631 47898631 G A NFXL1 Missense_Mutation p.T413I 0.52 deleterious(0.04) possibly_damaging(0.689) TCGA-DM-A28C-01 4 5664919 5664919 C T EVC2 Missense_Mutation p.V354M 0.41 deleterious(0.04) benign(0.249) TCGA-DM-A28C-01 4 62813952 62813952 C A LPHN3 Missense_Mutation p.H853Q 0.56 deleterious(0) probably_damaging(1) TCGA-DM-A28C-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.82 TCGA-DM-A28C-01 5 140182317 140182317 C T PCDHA3 Missense_Mutation p.A512V 0.37 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-DM-A28C-01 5 140262615 140262615 C T PCDHA13 Silent p.N254N 0.34 TCGA-DM-A28C-01 5 140750431 140750431 C T PCDHGB3 Missense_Mutation p.A157V 0.44 deleterious(0.02) probably_damaging(0.96) TCGA-DM-A28C-01 5 149677387 149677387 C T ARSI Missense_Mutation p.G367E 0.44 tolerated(0.39) benign(0.41) TCGA-DM-A28C-01 5 153085289 153085289 C T GRIA1 Silent p.I505I 0.52 TCGA-DM-A28C-01 5 158600988 158600988 T A RNF145 Intron 0.39 TCGA-DM-A28C-01 5 168250276 168250276 C A SLIT3 Missense_Mutation p.K206N 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A28C-01 5 176638196 176638196 C G NSD1 Missense_Mutation p.N932K 0.54 deleterious_low_confidence(0) benign(0.424) TCGA-DM-A28C-01 5 26889971 26889971 C G CDH9 Missense_Mutation p.V496L 0.47 tolerated(0.12) probably_damaging(0.992) TCGA-DM-A28C-01 5 41925578 41925578 C T FBXO4 Missense_Mutation p.A56V 0.47 tolerated(0.44) benign(0.034) TCGA-DM-A28C-01 5 5182218 5182218 C T ADAMTS16 Missense_Mutation p.S188L 0.37 tolerated(0.07) benign(0.004) TCGA-DM-A28C-01 6 101094572 101094572 C T ASCC3 Missense_Mutation p.M1184I 0.31 tolerated(0.21) benign(0.014) TCGA-DM-A28C-01 6 130764205 130764205 T A TMEM200A 3'UTR 0.38 TCGA-DM-A28C-01 6 133047950 133047950 G A VNN3 Intron 0.45 TCGA-DM-A28C-01 6 152749480 152749480 G C SYNE1 Missense_Mutation p.F1612L 0.26 benign(0) TCGA-DM-A28C-01 6 27107196 27107196 C T HIST1H4I Missense_Mutation p.R37C 0.39 deleterious(0.05) possibly_damaging(0.864) TCGA-DM-A28C-01 6 2766566 2766566 A G WRNIP1 Missense_Mutation p.Q237R 0.12 tolerated(0.31) benign(0.005) TCGA-DM-A28C-01 6 36937845 36937845 C A MTCH1 Missense_Mutation p.W339C 0.48 deleterious(0) probably_damaging(0.98) TCGA-DM-A28C-01 6 44221362 44221362 G C HSP90AB1 3'UTR 0.44 TCGA-DM-A28C-01 6 47847147 47847147 G T PTCHD4 Missense_Mutation p.S478Y 0.45 deleterious(0) probably_damaging(0.993) TCGA-DM-A28C-01 6 76022914 76022914 G A FILIP1 Silent p.N878N 0.38 TCGA-DM-A28C-01 6 90499902 90499902 C G MDN1 Missense_Mutation p.Q358H 0.49 probably_damaging(1) TCGA-DM-A28C-01 7 100253093 100253093 G A ACTL6B Silent p.H73H 0.39 TCGA-DM-A28C-01 7 140453155 140453155 C T BRAF Missense_Mutation p.D594N 0.30 deleterious(0) possibly_damaging(0.803) TCGA-DM-A28C-01 7 151846233 151846233 G C KMT2C Missense_Mutation p.S4260C 0.43 benign(0.051) TCGA-DM-A28C-01 7 23293803 23293803 C T GPNMB Missense_Mutation p.A80V 0.38 tolerated(0.22) benign(0.348) TCGA-DM-A28C-01 7 41729607 41729607 G A INHBA Missense_Mutation p.R308C 0.46 deleterious(0) probably_damaging(0.953) TCGA-DM-A28C-01 7 5920493 5920493 T C OCM 5'UTR 0.11 TCGA-DM-A28C-01 7 88965755 88965755 C T ZNF804B Silent p.D1153D 0.39 TCGA-DM-A28C-01 8 120430468 120430468 G C NOV Missense_Mutation p.V161L 0.34 deleterious(0) possibly_damaging(0.817) TCGA-DM-A28C-01 8 1496826 1496826 C A DLGAP2 5'UTR 0.23 TCGA-DM-A28C-01 8 26366542 26366542 C T PNMA2 5'UTR 0.38 TCGA-DM-A28C-01 8 28218554 28218554 C T ZNF395 Missense_Mutation p.A30T 0.60 tolerated(0.63) unknown(0) TCGA-DM-A28C-01 8 52321350 52321350 G A PXDNL Missense_Mutation p.A945V 0.36 tolerated(0.18) benign(0.108) TCGA-DM-A28C-01 8 65509132 65509132 A G CYP7B1 3'UTR 0.47 TCGA-DM-A28C-01 9 123785766 123785766 G A C5 Silent p.G344G 0.43 TCGA-DM-A28C-01 9 139944371 139944371 T C ENTPD2 Missense_Mutation p.Q367R 0.52 tolerated(0.33) benign(0.008) TCGA-DM-A28C-01 9 32634260 32634260 T C TAF1L Missense_Mutation p.I440V 0.42 tolerated(1) benign(0.001) TCGA-DM-A28C-01 9 95040164 95040165 - G IARS Frame_Shift_Ins p.L292Pfs*3 0.34 TCGA-DM-A28C-01 X 105452343 105452343 T C MUM1L1 3'UTR 0.92 TCGA-DM-A28C-01 X 135829721 135829721 C T ARHGEF6 Missense_Mutation p.V94I 0.83 tolerated_low_confidence(0.23) benign(0.001) TCGA-DM-A28C-01 X 140786590 140786590 G A SPANXD 5'UTR 0.87 TCGA-DM-A28C-01 X 50378275 50378275 G A SHROOM4 Silent p.P266P 0.82 TCGA-DM-A28C-01 X 75003565 75003565 G A MAGEE2 Missense_Mutation p.T441I 0.73 deleterious(0) probably_damaging(0.998) TCGA-DM-A28C-01 X 84526896 84526899 CTCA - ZNF711 3'UTR 0.69 TCGA-DM-A28E-01 10 129913911 129913911 T C MKI67 Missense_Mutation p.K254R 0.14 tolerated(0.36) benign(0.041) TCGA-DM-A28E-01 10 37431015 37431015 G C ANKRD30A Missense_Mutation p.S341T 0.40 tolerated(0.57) benign(0.044) TCGA-DM-A28E-01 11 111839354 111839354 C T DIXDC1 Missense_Mutation p.S103L 0.10 deleterious(0) possibly_damaging(0.701) TCGA-DM-A28E-01 11 113683037 113683037 G C USP28 Missense_Mutation p.L645V 0.38 deleterious(0) probably_damaging(0.999) TCGA-DM-A28E-01 11 116658244 116658244 A G ZNF259 Missense_Mutation p.I96T 0.09 deleterious(0.02) probably_damaging(0.964) TCGA-DM-A28E-01 11 12535563 12535563 A G PARVA Missense_Mutation p.N313S 0.12 deleterious(0.02) probably_damaging(0.974) TCGA-DM-A28E-01 11 30435827 30435827 C T MPPED2 Silent p.T238T 0.43 TCGA-DM-A28E-01 11 66478191 66478191 G A SPTBN2 Missense_Mutation p.S312F 0.47 deleterious(0.01) possibly_damaging(0.596) TCGA-DM-A28E-01 11 73008545 73008545 C T P2RY6 Missense_Mutation p.R328C 0.50 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-DM-A28E-01 11 77652268 77652268 G T INTS4 Missense_Mutation p.F316L 0.47 deleterious(0.01) possibly_damaging(0.532) TCGA-DM-A28E-01 12 117681141 117681141 G A NOS1 Missense_Mutation p.R1009C 0.40 deleterious(0) possibly_damaging(0.861) TCGA-DM-A28E-01 12 124499912 124499912 A T ZNF664 3'UTR 0.16 TCGA-DM-A28E-01 12 125396252 125396252 G - UBC 3'UTR 0.36 TCGA-DM-A28E-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.38 deleterious(0) possibly_damaging(0.479) TCGA-DM-A28E-01 12 31250919 31250919 T C DDX11 Silent p.G621G 0.23 TCGA-DM-A28E-01 12 50744165 50744165 C T FAM186A Silent p.Q2150Q 0.45 TCGA-DM-A28E-01 12 50869315 50869315 C T LARP4 Nonsense_Mutation p.R615* 0.48 TCGA-DM-A28E-01 12 5687655 5687655 C T ANO2 Missense_Mutation p.V755M 0.50 deleterious(0) probably_damaging(0.98) TCGA-DM-A28E-01 12 57036324 57036324 T C ATP5B Missense_Mutation p.Y331C 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DM-A28E-01 12 6787346 6787346 A G ZNF384 Silent p.Y211Y 0.35 TCGA-DM-A28E-01 13 24247657 24247657 G A TNFRSF19 3'Flank 0.28 TCGA-DM-A28E-01 13 96205229 96205229 T C CLDN10 Splice_Site p.X74_splice 0.63 TCGA-DM-A28E-01 14 58063478 58063478 T C SLC35F4 Silent p.R46R 0.09 TCGA-DM-A28E-01 15 26866630 26866630 C T GABRB3 Missense_Mutation p.A98T 0.46 tolerated(0.06) probably_damaging(1) TCGA-DM-A28E-01 15 74427737 74427737 C T ISLR2 3'UTR 0.48 TCGA-DM-A28E-01 16 57470586 57470586 A G CIAPIN1 Silent p.G123G 0.10 TCGA-DM-A28E-01 16 57551991 57551991 C T CCDC102A Missense_Mutation p.E413K 0.09 deleterious(0.03) possibly_damaging(0.726) TCGA-DM-A28E-01 16 71163623 71163623 G A HYDIN Nonsense_Mutation p.R383* 0.33 TCGA-DM-A28E-01 16 830602 830602 C T MSLNL Silent p.A133A 0.43 TCGA-DM-A28E-01 16 88871863 88871863 C T CDT1 Silent p.P168P 0.25 TCGA-DM-A28E-01 16 90160956 90160956 C T TUBB8P7 Intron 0.27 TCGA-DM-A28E-01 17 34937776 34937776 G T GGNBP2 Missense_Mutation p.M341I 0.45 tolerated(0.09) benign(0.01) TCGA-DM-A28E-01 17 40831621 40831621 A - CCR10 Frame_Shift_Del p.S347Lfs*27 0.43 TCGA-DM-A28E-01 17 42267982 42267982 A - TMUB2 Frame_Shift_Del p.H239Pfs*76 0.35 TCGA-DM-A28E-01 17 51901304 51901304 C A KIF2B Missense_Mutation p.Q304K 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A28E-01 17 54672929 54672929 A G NOG 3'UTR 0.46 TCGA-DM-A28E-01 17 65717544 65717544 G A NOL11 Silent p.L121L 0.08 TCGA-DM-A28E-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.80 deleterious(0) probably_damaging(0.985) TCGA-DM-A28E-01 17 80393598 80393598 C T HEXDC Missense_Mutation p.R161W 0.47 deleterious(0) probably_damaging(0.94) TCGA-DM-A28E-01 17 80403793 80403793 G A C17orf62 Missense_Mutation p.T82M 0.48 deleterious(0.01) probably_damaging(0.983) TCGA-DM-A28E-01 19 12060707 12060707 A C ZNF700 Missense_Mutation p.K623T 0.63 deleterious(0) probably_damaging(0.999) TCGA-DM-A28E-01 19 12812442 12812442 C T TNPO2 Silent p.P852P 0.47 TCGA-DM-A28E-01 19 14049019 14049019 G A PODNL1 5'UTR 0.40 TCGA-DM-A28E-01 19 37903649 37903649 A C ZNF569 Missense_Mutation p.S637R 0.13 tolerated(0.09) possibly_damaging(0.515) TCGA-DM-A28E-01 19 39597674 39597674 C T PAPL Missense_Mutation p.H401Y 0.14 tolerated(0.47) benign(0.021) TCGA-DM-A28E-01 19 40722039 40722039 C T TTC9B 3'UTR 0.28 TCGA-DM-A28E-01 19 49472694 49472694 G A GYS1 Missense_Mutation p.R689C 0.47 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-DM-A28E-01 19 54824292 54824292 T C LILRA5 5'UTR 0.50 TCGA-DM-A28E-01 19 8665925 8665925 G A ADAMTS10 Nonsense_Mutation p.R233* 0.46 TCGA-DM-A28E-01 1 116383049 116383049 A G NHLH2 5'UTR 0.35 TCGA-DM-A28E-01 1 118166436 118166436 G A FAM46C Missense_Mutation p.E316K 0.42 tolerated(0.05) benign(0.129) TCGA-DM-A28E-01 1 149884968 149884968 C T SV2A Missense_Mutation p.R142Q 0.44 tolerated(0.68) benign(0.007) TCGA-DM-A28E-01 1 152188570 152188570 G A HRNR Silent p.Y1845Y 0.08 TCGA-DM-A28E-01 1 152883088 152883088 A G IVL Missense_Mutation p.Q272R 0.44 deleterious(0) probably_damaging(0.932) TCGA-DM-A28E-01 1 17256976 17256976 G T CROCC Missense_Mutation p.A246S 0.26 probably_damaging(0.959) TCGA-DM-A28E-01 1 175066553 175066553 A G TNN Missense_Mutation p.E530G 0.54 tolerated(0.11) benign(0.013) TCGA-DM-A28E-01 1 175375650 175375650 G A TNR Silent p.H67H 0.42 TCGA-DM-A28E-01 1 233270848 233270848 A G PCNXL2 Missense_Mutation p.F1250L 0.45 deleterious(0.02) possibly_damaging(0.473) TCGA-DM-A28E-01 1 35452906 35452906 A T ZMYM6 Missense_Mutation p.N1259K 0.35 tolerated_low_confidence(0.23) benign(0.003) TCGA-DM-A28E-01 1 40980521 40980521 T C EXO5 Missense_Mutation p.L102P 0.09 tolerated(0.09) probably_damaging(0.925) TCGA-DM-A28E-01 1 45525780 45525780 C T ZSWIM5 Missense_Mutation p.M364I 0.38 deleterious(0.04) unknown(0) TCGA-DM-A28E-01 1 8075404 8075404 G T ERRFI1 Missense_Mutation p.L56M 0.35 tolerated(0.06) probably_damaging(0.939) TCGA-DM-A28E-01 1 85486820 85486820 C G MCOLN3 Missense_Mutation p.S487T 0.41 deleterious(0) probably_damaging(0.974) TCGA-DM-A28E-01 20 33338033 33338033 A T NCOA6 Silent p.L655L 0.14 TCGA-DM-A28E-01 20 34053622 34053622 C T CEP250 Silent p.L100L 0.38 TCGA-DM-A28E-01 20 40033394 40033394 C - CHD6 Frame_Shift_Del p.D2663Tfs*59 0.22 TCGA-DM-A28E-01 2 103059744 103059744 C G IL18RAP Missense_Mutation p.S294C 0.26 deleterious(0.01) possibly_damaging(0.759) TCGA-DM-A28E-01 2 132021185 132021185 C T POTEE Silent p.A719A 0.44 TCGA-DM-A28E-01 2 139308601 139308601 A G SPOPL Missense_Mutation p.K110R 0.40 tolerated(0.08) probably_damaging(0.911) TCGA-DM-A28E-01 2 163693156 163693156 G A KCNH7 Silent p.C66C 0.43 TCGA-DM-A28E-01 2 166532935 166532935 A G CSRNP3 Silent p.L174L 0.43 TCGA-DM-A28E-01 2 200188527 200188527 T C SATB2 Missense_Mutation p.Q514R 0.43 deleterious(0) probably_damaging(0.999) TCGA-DM-A28E-01 2 220085523 220085523 A G ATG9A Silent p.P820P 0.08 TCGA-DM-A28E-01 2 238296320 238296320 C T COL6A3 Missense_Mutation p.R406H 0.46 benign(0.329) TCGA-DM-A28E-01 2 69752182 69752182 C T AAK1 Silent p.K346K 0.38 TCGA-DM-A28E-01 2 75720704 75720704 A T EVA1A Silent p.V39V 0.20 TCGA-DM-A28E-01 2 98413898 98413898 C T TMEM131 Missense_Mutation p.E934K 0.08 deleterious(0.04) probably_damaging(0.98) TCGA-DM-A28E-01 3 112711927 112711930 TTTT - GTPBP8 Frame_Shift_Del p.F131Hfs*20 0.44 TCGA-DM-A28E-01 3 11623773 11623773 T C VGLL4 Intron 0.71 TCGA-DM-A28E-01 3 171453334 171453334 T G PLD1 Silent p.R128R 0.49 TCGA-DM-A28E-01 3 54905647 54905647 G A CACNA2D3 Missense_Mutation p.V570M 0.37 tolerated(0.52) benign(0.015) TCGA-DM-A28E-01 4 175416777 175416777 T C HPGD Splice_Site p.X141_splice 0.15 TCGA-DM-A28E-01 4 7435943 7435943 C T PSAPL1 Missense_Mutation p.V222I 0.38 tolerated(0.37) benign(0.001) TCGA-DM-A28E-01 5 112173704 112173704 C T APC Nonsense_Mutation p.R805* 0.49 TCGA-DM-A28E-01 5 112175647 112175647 A - APC Frame_Shift_Del p.P1453Lfs*20 0.32 TCGA-DM-A28E-01 5 13885260 13885260 C A DNAH5 Missense_Mutation p.V941F 0.39 benign(0.004) TCGA-DM-A28E-01 5 140250916 140250916 C T PCDHA11 Missense_Mutation p.A743V 0.52 deleterious_low_confidence(0.02) possibly_damaging(0.493) TCGA-DM-A28E-01 5 140256667 140256667 C T PCDHA12 Missense_Mutation p.A537V 0.51 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-DM-A28E-01 5 140530138 140530138 G A PCDHB6 Silent p.P100P 0.26 TCGA-DM-A28E-01 5 140595757 140595757 G A PCDHB13 Missense_Mutation p.V688I 0.48 tolerated_low_confidence(0.15) benign(0.007) TCGA-DM-A28E-01 5 156533756 156533756 A - HAVCR2 Frame_Shift_Del p.D92Efs*4 0.30 TCGA-DM-A28E-01 5 159680516 159680517 - G CCNJL Frame_Shift_Ins p.V393Rfs*8 0.22 TCGA-DM-A28E-01 5 167920951 167920954 TTAC - RARS Frame_Shift_Del p.I141Tfs*25 0.44 TCGA-DM-A28E-01 5 169780958 169780958 C T KCNIP1 Silent p.T26T 0.32 TCGA-DM-A28E-01 5 80366374 80366374 G T RASGRF2 Missense_Mutation p.D203Y 0.39 deleterious(0) probably_damaging(0.945) TCGA-DM-A28E-01 5 82836236 82836236 C T VCAN Missense_Mutation p.P2472S 0.49 tolerated(0.36) benign(0.011) TCGA-DM-A28E-01 6 123318625 123318625 C T CLVS2 5'UTR 0.48 TCGA-DM-A28E-01 6 159652960 159652960 C T FNDC1 Silent p.P472P 0.32 TCGA-DM-A28E-01 6 170181595 170181595 A T ERMARD Nonsense_Mutation p.K675* 0.27 TCGA-DM-A28E-01 6 32041548 32041548 C T RNA5SP206 3'Flank 0.51 TCGA-DM-A28E-01 6 35423873 35423873 C T FANCE Missense_Mutation p.R200C 0.42 deleterious(0.02) probably_damaging(0.939) TCGA-DM-A28E-01 6 65622424 65622424 G T EYS Missense_Mutation p.T865K 0.11 deleterious(0) possibly_damaging(0.563) TCGA-DM-A28E-01 6 65622437 65622437 T C EYS Missense_Mutation p.R861G 0.11 tolerated(0.4) benign(0.107) TCGA-DM-A28E-01 7 121652279 121652279 A G PTPRZ1 Missense_Mutation p.N1060S 0.47 tolerated_low_confidence(1) benign(0) TCGA-DM-A28E-01 7 150029687 150029687 A G ZBED6CL 3'UTR 0.44 TCGA-DM-A28E-01 7 150164088 150164088 T G GIMAP8 Missense_Mutation p.I101S 0.40 deleterious(0) possibly_damaging(0.893) TCGA-DM-A28E-01 7 21640303 21640303 G T DNAH11 Missense_Mutation p.D1004Y 0.50 probably_damaging(0.947) TCGA-DM-A28E-01 7 21857903 21857903 C T DNAH11 Missense_Mutation p.T3553M 0.28 benign(0.092) TCGA-DM-A28E-01 7 4277314 4277314 T G SDK1 Missense_Mutation p.F2010V 0.41 deleterious(0) probably_damaging(0.991) TCGA-DM-A28E-01 7 51111090 51111090 A G COBL Missense_Mutation p.S466P 0.09 tolerated(0.23) benign(0.193) TCGA-DM-A28E-01 7 64437374 64437374 G C ZNF117 3'UTR 0.71 TCGA-DM-A28E-01 7 94054531 94054531 C T COL1A2 Missense_Mutation p.R926C 0.42 unknown(0) TCGA-DM-A28E-01 8 11995174 11995174 G T USP17L2 Missense_Mutation p.Q366K 0.24 tolerated(0.91) benign(0.015) TCGA-DM-A28E-01 8 144996349 144996349 C T PLEC Missense_Mutation p.R2684Q 0.38 benign(0.015) TCGA-DM-A28E-01 8 56270266 56270266 C T XKR4 Nonsense_Mutation p.R279* 0.49 TCGA-DM-A28E-01 8 71075722 71075722 A G NCOA2 Silent p.F270F 0.17 TCGA-DM-A28E-01 9 116028517 116028517 G A SLC31A1 3'Flank 0.52 TCGA-DM-A28E-01 9 70177673 70177673 C T FOXD4L5 Missense_Mutation p.R104Q 0.34 tolerated(0.11) benign(0.001) TCGA-DM-A28E-01 X 110406163 110406163 G A PAK3 Silent p.E199E 0.56 TCGA-DM-A28E-01 X 119668391 119668391 C A CUL4B Missense_Mutation p.M755I 0.66 deleterious(0.01) benign(0.021) TCGA-DM-A28E-01 X 129483310 129483310 C T SLC25A14 Missense_Mutation p.R135C 0.30 deleterious(0.03) benign(0.081) TCGA-DM-A28E-01 X 151093216 151093216 T - MAGEA4 3'UTR 0.24 TCGA-DM-A28E-01 X 153060182 153060182 C G SSR4 Missense_Mutation p.L14V 0.63 tolerated(0.94) unknown(0) TCGA-DM-A28E-01 X 41077641 41077641 A T USP9X Missense_Mutation p.I2076F 0.07 tolerated(0.7) benign(0.157) TCGA-DM-A28E-01 X 50350849 50350849 G A SHROOM4 Missense_Mutation p.A1098V 0.59 tolerated(0.08) benign(0.011) TCGA-DM-A28E-01 X 5811015 5811015 C T NLGN4X Missense_Mutation p.R765H 0.31 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-DM-A28E-01 X 69496109 69496109 A G ARR3 Missense_Mutation p.N108S 0.48 deleterious(0.03) possibly_damaging(0.473) TCGA-DM-A28E-01 X 70149828 70149828 C T SLC7A3 Missense_Mutation p.R7H 0.38 tolerated(0.84) benign(0.003) TCGA-DM-A28F-01 10 104679130 104679130 A T CNNM2 Missense_Mutation p.E298V 0.68 deleterious(0) probably_damaging(0.997) TCGA-DM-A28F-01 10 114920413 114920413 G A TCF7L2 Missense_Mutation p.G452R 0.33 deleterious(0.01) probably_damaging(1) TCGA-DM-A28F-01 10 117823895 117823895 T - GFRA1 3'UTR 0.46 TCGA-DM-A28F-01 10 11894124 11894124 C G PROSER2 Missense_Mutation p.D16E 0.33 tolerated(0.49) possibly_damaging(0.662) TCGA-DM-A28F-01 10 12178165 12178165 G C SEC61A2 Missense_Mutation p.C46S 0.25 tolerated(1) benign(0.015) TCGA-DM-A28F-01 10 133106531 133106531 G T TCERG1L Missense_Mutation p.P205T 0.68 deleterious(0) probably_damaging(0.997) TCGA-DM-A28F-01 10 31809256 31809256 G T ZEB1 Missense_Mutation p.K332N 0.32 deleterious(0) probably_damaging(0.998) TCGA-DM-A28F-01 10 37436357 37436357 A C ANKRD30A Missense_Mutation p.K449N 0.37 tolerated(0.08) possibly_damaging(0.788) TCGA-DM-A28F-01 10 38121584 38121584 C G ZNF248 Missense_Mutation p.K233N 0.47 deleterious(0.05) benign(0.109) TCGA-DM-A28F-01 10 43622189 43622189 T G RET Intron 0.40 TCGA-DM-A28F-01 10 70097032 70097032 A G HNRNPH3 Silent p.V18V 0.75 TCGA-DM-A28F-01 10 71912267 71912267 C T SAR1A Missense_Mutation p.E188K 0.73 deleterious(0) benign(0.402) TCGA-DM-A28F-01 10 7213921 7213921 G A SFMBT2 Missense_Mutation p.A784V 0.83 tolerated(0.39) benign(0.002) TCGA-DM-A28F-01 11 100922274 100922274 G T PGR Missense_Mutation p.D746E 0.23 deleterious(0) probably_damaging(0.999) TCGA-DM-A28F-01 11 113660985 113660985 G A ATF4P4 RNA 0.32 TCGA-DM-A28F-01 11 117094003 117094003 C T PCSK7 Missense_Mutation p.R359H 0.47 tolerated(0.54) benign(0.008) TCGA-DM-A28F-01 11 123900338 123900338 C T OR10G8 Silent p.N3N 0.23 TCGA-DM-A28F-01 11 132204999 132204999 C A NTM Missense_Mutation p.L343M 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-DM-A28F-01 11 18793498 18793498 T C PTPN5 Missense_Mutation p.Y3C 0.27 deleterious_low_confidence(0.01) benign(0) TCGA-DM-A28F-01 11 19077154 19077154 C A MRGPRX2 Missense_Mutation p.V266F 0.21 tolerated(0.72) benign(0.023) TCGA-DM-A28F-01 11 22284542 22284542 A T ANO5 Silent p.I617I 0.26 TCGA-DM-A28F-01 11 31812394 31812394 G C PAX6 Missense_Mutation p.S363R 0.30 tolerated(0.07) benign(0.004) TCGA-DM-A28F-01 11 44959839 44959839 C T TP53I11 Silent p.T16T 0.59 TCGA-DM-A28F-01 11 4566964 4566964 T A OR52M1 Missense_Mutation p.C182S 0.08 deleterious(0.01) benign(0.26) TCGA-DM-A28F-01 11 45907455 45907455 T C MAPK8IP1 Silent p.A28A 0.09 TCGA-DM-A28F-01 11 4608921 4608921 G T OR52I2 Missense_Mutation p.W293C 0.30 deleterious(0.05) probably_damaging(0.984) TCGA-DM-A28F-01 11 4674008 4674008 G T OR51E1 Missense_Mutation p.M84I 0.24 tolerated(0.48) benign(0.023) TCGA-DM-A28F-01 11 48347266 48347266 A G OR4C3 Silent p.R258R 0.15 TCGA-DM-A28F-01 11 50003299 50003299 A C OR4C12 Missense_Mutation p.L247V 0.20 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-DM-A28F-01 11 55682013 55682013 C G OR5W2 Missense_Mutation p.G16R 0.49 deleterious(0) possibly_damaging(0.89) TCGA-DM-A28F-01 11 56258095 56258095 T G OR5M8 Missense_Mutation p.Y251S 0.25 deleterious(0) probably_damaging(0.969) TCGA-DM-A28F-01 11 56431688 56431688 A G OR5AR1 Missense_Mutation p.H176R 0.31 deleterious(0) possibly_damaging(0.859) TCGA-DM-A28F-01 11 57382015 57382015 C T SERPING1 Silent p.F488F 0.29 TCGA-DM-A28F-01 11 59131990 59131991 - G OR5AN1 Frame_Shift_Ins p.D20Efs*47 0.19 TCGA-DM-A28F-01 11 59224699 59224699 G T OR4D6 Missense_Mutation p.R89M 0.22 deleterious(0.02) possibly_damaging(0.907) TCGA-DM-A28F-01 11 59481270 59481270 A C OR10V1 Missense_Mutation p.F17V 0.25 deleterious(0.01) possibly_damaging(0.792) TCGA-DM-A28F-01 11 60531416 60531416 G A MS4A15 Silent p.E70E 0.47 TCGA-DM-A28F-01 11 61496463 61496463 C T DAGLA Missense_Mutation p.L278F 0.56 deleterious(0) probably_damaging(0.942) TCGA-DM-A28F-01 11 63525877 63525877 T G RTN3 3'UTR 0.35 TCGA-DM-A28F-01 11 64756844 64756844 G T BATF2 Silent p.A194A 0.31 TCGA-DM-A28F-01 11 68846030 68846030 G T TPCN2 Silent p.L437L 0.22 TCGA-DM-A28F-01 11 70013391 70013391 A G ANO1 Missense_Mutation p.S699G 0.08 tolerated(0.51) benign(0.297) TCGA-DM-A28F-01 11 76731341 76731341 G A ACER3 Silent p.V258V 0.25 TCGA-DM-A28F-01 11 89424637 89424638 - C FOLH1B RNA 0.21 TCGA-DM-A28F-01 12 101757468 101757468 G A UTP20 Missense_Mutation p.G1969S 0.26 tolerated(0.15) benign(0.305) TCGA-DM-A28F-01 12 103248976 103248976 T A PAH Missense_Mutation p.K215M 0.38 deleterious(0.01) possibly_damaging(0.868) TCGA-DM-A28F-01 12 110466211 110466211 C T ANKRD13A Intron 0.50 TCGA-DM-A28F-01 12 120530897 120530897 G A CCDC64 Missense_Mutation p.A552T 0.20 tolerated(0.21) benign(0.001) TCGA-DM-A28F-01 12 124428782 124428782 C A CCDC92 Intron 0.31 TCGA-DM-A28F-01 12 133197653 133197653 C T P2RX2 Missense_Mutation p.P281S 0.09 deleterious(0) probably_damaging(0.999) TCGA-DM-A28F-01 12 133448924 133448925 AA - CHFR Frame_Shift_Del p.L97Tfs*14 0.41 TCGA-DM-A28F-01 12 40943728 40943728 T G MUC19 3'UTR 0.44 TCGA-DM-A28F-01 12 4554551 4554551 G A FGF6 Silent p.R62R 0.28 TCGA-DM-A28F-01 12 48723332 48723332 C T H1FNT Silent p.A86A 0.32 TCGA-DM-A28F-01 12 6756014 6756014 T C ACRBP Missense_Mutation p.N70D 0.27 tolerated(0.23) probably_damaging(0.998) TCGA-DM-A28F-01 12 83290352 83290352 T G TMTC2 Silent p.T470T 0.31 TCGA-DM-A28F-01 12 85441130 85441131 AA CAG LRRIQ1 Frame_Shift_Ins p.Q187Pfs*9 0.26 TCGA-DM-A28F-01 12 88560265 88560265 G A TMTC3 Missense_Mutation p.R319Q 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 13 110960291 110960291 G A COL4A2 Missense_Mutation p.R14Q 0.20 benign(0.033) TCGA-DM-A28F-01 13 113530177 113530177 G A ATP11A Silent p.V1083V 0.27 TCGA-DM-A28F-01 13 25362166 25362166 G A RNF17 Missense_Mutation p.D218N 0.24 tolerated(0.59) benign(0.047) TCGA-DM-A28F-01 13 52707951 52707951 C T NEK3 Missense_Mutation p.G420D 0.34 tolerated(0.12) benign(0.078) TCGA-DM-A28F-01 13 58207305 58207305 C A PCDH17 Missense_Mutation p.H209N 0.34 deleterious(0) probably_damaging(0.93) TCGA-DM-A28F-01 13 58299066 58299066 A C PCDH17 Missense_Mutation p.T1040P 0.21 tolerated_low_confidence(0.07) possibly_damaging(0.52) TCGA-DM-A28F-01 13 95121166 95121166 G A DCT Silent p.G143G 0.19 TCGA-DM-A28F-01 13 96506708 96506708 C G UGGT2 Missense_Mutation p.E1344Q 0.11 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 14 101493499 101493499 T G MIR329-2 RNA 0.08 TCGA-DM-A28F-01 14 106091380 106091380 G A IGHG4 Missense_Mutation p.R172W 0.22 deleterious(0.02) possibly_damaging(0.839) TCGA-DM-A28F-01 14 106320723 106320723 C T IGHM Missense_Mutation p.V363M 0.38 tolerated(0.09) probably_damaging(0.931) TCGA-DM-A28F-01 14 24040526 24040526 G A JPH4 Nonsense_Mutation p.R472* 0.23 TCGA-DM-A28F-01 14 29236524 29236524 C A FOXG1 Silent p.I13I 0.41 TCGA-DM-A28F-01 14 35233925 35233925 T A BAZ1A Missense_Mutation p.E1255V 0.26 deleterious_low_confidence(0.01) benign(0.099) TCGA-DM-A28F-01 14 35233926 35233926 C A BAZ1A Nonsense_Mutation p.E1255* 0.26 TCGA-DM-A28F-01 14 63416801 63416801 G T KCNH5 Intron 0.27 TCGA-DM-A28F-01 14 64687314 64687315 - G SYNE2 Frame_Shift_Ins p.S6674Rfs*83 0.28 TCGA-DM-A28F-01 14 71058052 71058052 A C MED6 Missense_Mutation p.I171M 0.42 tolerated(0.14) benign(0.007) TCGA-DM-A28F-01 14 94756558 94756558 T G SERPINA10 Missense_Mutation p.K125Q 0.43 tolerated(0.08) benign(0.021) TCGA-DM-A28F-01 15 26026194 26026194 C T ATP10A Missense_Mutation p.R209Q 0.60 deleterious(0) probably_damaging(0.995) TCGA-DM-A28F-01 15 45007620 45007620 G T B2M Splice_Site p.X23_splice 0.45 TCGA-DM-A28F-01 15 67687687 67687687 T C IQCH Missense_Mutation p.I564T 0.36 deleterious(0) probably_damaging(0.999) TCGA-DM-A28F-01 15 72104409 72104409 G A NR2E3 RNA 0.19 TCGA-DM-A28F-01 16 1570144 1570144 G A IFT140 Silent p.D1287D 0.41 TCGA-DM-A28F-01 16 1877266 1877266 C T FAHD1 Silent p.R12R 0.36 TCGA-DM-A28F-01 16 67862686 67862686 G A CENPT Silent p.T447T 0.19 TCGA-DM-A28F-01 16 732261 732261 G C STUB1 Missense_Mutation p.D256H 0.45 tolerated(0.06) possibly_damaging(0.736) TCGA-DM-A28F-01 16 80646582 80646582 G A CDYL2 Missense_Mutation p.R387C 0.12 deleterious(0.03) probably_damaging(0.939) TCGA-DM-A28F-01 16 85011534 85011534 C T ZDHHC7 Nonsense_Mutation p.W242* 0.29 TCGA-DM-A28F-01 16 88066772 88066772 C T BANP Missense_Mutation p.P366L 0.19 deleterious_low_confidence(0.03) benign(0.148) TCGA-DM-A28F-01 16 88874617 88874617 C T CDT1 Silent p.D524D 0.18 TCGA-DM-A28F-01 17 19827747 19827747 T C AKAP10 Silent p.E575E 0.33 TCGA-DM-A28F-01 17 33321309 33321309 G A LIG3 Silent p.K490K 0.11 TCGA-DM-A28F-01 17 33460442 33460442 G C NLE1 Silent p.V430V 0.24 TCGA-DM-A28F-01 17 33520280 33520280 C A SLC35G3 3'UTR 0.33 TCGA-DM-A28F-01 17 39635723 39635723 A T KRT35 Missense_Mutation p.V196E 0.31 deleterious(0) probably_damaging(0.999) TCGA-DM-A28F-01 17 46000487 46000487 C T SP2 Nonsense_Mutation p.R407* 0.34 TCGA-DM-A28F-01 17 48828037 48828037 G C LUC7L3 3'UTR 0.36 TCGA-DM-A28F-01 17 56693649 56693649 C T TEX14 Silent p.A224A 0.15 TCGA-DM-A28F-01 17 60345584 60345584 A G TBC1D3P2 RNA 0.37 TCGA-DM-A28F-01 17 63052690 63052690 G A GNA13 Missense_Mutation p.R8W 0.50 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-DM-A28F-01 17 74075624 74075624 G A ZACN Missense_Mutation p.V68I 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-DM-A28F-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.67 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 17 76171018 76171018 C A TK1 Missense_Mutation p.G176V 0.21 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 17 78063591 78063592 - C CCDC40 Frame_Shift_Ins p.I914Tfs*84 0.26 TCGA-DM-A28F-01 18 56063584 56063584 C T NEDD4L 3'UTR 0.75 TCGA-DM-A28F-01 18 6239763 6239763 G A L3MBTL4 Missense_Mutation p.R221C 0.58 deleterious(0.01) benign(0.235) TCGA-DM-A28F-01 18 65180418 65180418 A C DSEL Silent p.T486T 0.63 TCGA-DM-A28F-01 18 8387149 8387149 G A PTPRM Missense_Mutation p.R1375H 0.26 tolerated(0.06) benign(0.005) TCGA-DM-A28F-01 19 10273346 10273346 T C DNMT1 Silent p.E335E 0.25 TCGA-DM-A28F-01 19 10502361 10502361 G A CDC37 Missense_Mutation p.R335C 0.18 deleterious(0) probably_damaging(0.994) TCGA-DM-A28F-01 19 11333410 11333410 C A DOCK6 Splice_Site p.X1080_splice 0.46 TCGA-DM-A28F-01 19 14029605 14029605 C A CC2D1A Silent p.T331T 0.31 TCGA-DM-A28F-01 19 17983160 17983160 C T SLC5A5 Missense_Mutation p.T11I 0.54 deleterious(0.01) probably_damaging(0.974) TCGA-DM-A28F-01 19 19334875 19334875 C A NCAN Missense_Mutation p.T174N 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A28F-01 19 21477069 21477069 A G ZNF708 Silent p.F233F 0.46 TCGA-DM-A28F-01 19 21719430 21719430 A C ZNF429 Missense_Mutation p.K192T 0.23 deleterious(0.04) probably_damaging(0.964) TCGA-DM-A28F-01 19 2213965 2213965 C T DOT1L Missense_Mutation p.R593C 0.36 deleterious(0) probably_damaging(0.995) TCGA-DM-A28F-01 19 22156121 22156121 T G ZNF208 Missense_Mutation p.K572T 0.25 deleterious(0.01) probably_damaging(0.96) TCGA-DM-A28F-01 19 22363452 22363452 T G ZNF676 Missense_Mutation p.K356T 0.24 deleterious(0.01) possibly_damaging(0.721) TCGA-DM-A28F-01 19 22379573 22379573 G A ZNF676 5'UTR 0.22 TCGA-DM-A28F-01 19 22379574 22379574 C G ZNF676 5'UTR 0.22 TCGA-DM-A28F-01 19 22575670 22575670 T G ZNF98 Silent p.R123R 0.25 TCGA-DM-A28F-01 19 33168745 33168745 G C RGS9BP 3'UTR 0.18 TCGA-DM-A28F-01 19 3551111 3551111 G A MFSD12 Missense_Mutation p.A127V 0.34 possibly_damaging(0.759) TCGA-DM-A28F-01 19 36017703 36017703 A T SBSN Missense_Mutation p.L494H 0.56 tolerated(0.14) probably_damaging(0.966) TCGA-DM-A28F-01 19 37211377 37211377 C T ZNF567 Missense_Mutation p.T553M 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-DM-A28F-01 19 38964255 38964255 G A RYR1 Missense_Mutation p.R1335H 0.15 possibly_damaging(0.793) TCGA-DM-A28F-01 19 39307981 39307981 G A ECH1 Silent p.A166A 0.55 TCGA-DM-A28F-01 19 3984134 3984134 G A EEF2 Missense_Mutation p.T73I 0.21 deleterious(0) probably_damaging(0.953) TCGA-DM-A28F-01 19 40947884 40947884 C T SERTAD3 Missense_Mutation p.R35H 0.27 tolerated(0.16) possibly_damaging(0.523) TCGA-DM-A28F-01 19 43982212 43982212 C T PHLDB3 Missense_Mutation p.R592H 0.23 deleterious(0) probably_damaging(0.984) TCGA-DM-A28F-01 19 48653079 48653079 G C LIG1 Silent p.V239V 0.28 TCGA-DM-A28F-01 19 53472577 53472577 T A ZNF702P RNA 0.57 TCGA-DM-A28F-01 19 53958982 53958982 G A ZNF761 RNA 0.20 TCGA-DM-A28F-01 19 54578199 54578199 C T TARM1 Missense_Mutation p.A80T 0.19 deleterious(0.02) possibly_damaging(0.817) TCGA-DM-A28F-01 19 58341896 58341896 G T ZNF587B 5'UTR 0.29 TCGA-DM-A28F-01 19 58640424 58640424 G T ZNF329 Nonsense_Mutation p.Y149* 0.24 TCGA-DM-A28F-01 19 6416795 6416795 C A KHSRP Missense_Mutation p.M427I 0.31 tolerated(0.67) benign(0.42) TCGA-DM-A28F-01 19 6665255 6665255 G T TNFSF14 Silent p.V135V 0.19 TCGA-DM-A28F-01 19 9076120 9076120 A C MUC16 Missense_Mutation p.L3776V 0.22 unknown(0) TCGA-DM-A28F-01 19 9801747 9801747 T G ZNF812 Missense_Mutation p.K144N 0.24 tolerated(0.07) benign(0.012) TCGA-DM-A28F-01 1 100613660 100613660 G A TRMT13 Missense_Mutation p.R343K 0.25 tolerated(0.55) benign(0.015) TCGA-DM-A28F-01 1 115430287 115430287 G T SYCP1 Nonsense_Mutation p.E411* 0.31 TCGA-DM-A28F-01 1 115438115 115438115 A C SYCP1 Missense_Mutation p.E435D 0.37 tolerated(0.08) probably_damaging(0.978) TCGA-DM-A28F-01 1 116380939 116380939 A G NHLH2 Missense_Mutation p.S19P 0.51 tolerated_low_confidence(0.09) possibly_damaging(0.665) TCGA-DM-A28F-01 1 119575862 119575862 C T WARS2 Missense_Mutation p.R252H 0.23 deleterious(0) probably_damaging(0.991) TCGA-DM-A28F-01 1 120263693 120263693 G A PHGDH Intron 0.23 TCGA-DM-A28F-01 1 12943207 12943207 C A PRAMEF4 Missense_Mutation p.M3I 0.42 deleterious(0) probably_damaging(0.981) TCGA-DM-A28F-01 1 153579955 153579955 G A S100A16 3'UTR 0.32 TCGA-DM-A28F-01 1 154313381 154313381 G C ATP8B2 Missense_Mutation p.K395N 0.30 tolerated(0.08) benign(0.218) TCGA-DM-A28F-01 1 156849833 156849833 G C NTRK1 Missense_Mutation p.E697Q 0.16 deleterious(0) probably_damaging(0.988) TCGA-DM-A28F-01 1 159284369 159284369 G A OR10J3 Silent p.V27V 0.54 TCGA-DM-A28F-01 1 169582895 169582895 T C SELP Missense_Mutation p.E173G 0.25 deleterious(0) probably_damaging(0.968) TCGA-DM-A28F-01 1 181546990 181546990 G A CACNA1E Missense_Mutation p.V201M 0.21 deleterious(0) possibly_damaging(0.867) TCGA-DM-A28F-01 1 196762637 196762637 C T CFHR3 Silent p.C329C 0.52 TCGA-DM-A28F-01 1 196871619 196871620 - A CFHR4 Frame_Shift_Ins p.F43Yfs*14 0.22 TCGA-DM-A28F-01 1 200534752 200534752 G A KIF14 Missense_Mutation p.S1236F 0.24 deleterious(0) possibly_damaging(0.903) TCGA-DM-A28F-01 1 21902348 21902348 G A ALPL Missense_Mutation p.V374M 0.35 deleterious(0.03) probably_damaging(0.922) TCGA-DM-A28F-01 1 228444566 228444566 C T OBSCN Silent p.V1600V 0.27 TCGA-DM-A28F-01 1 234582610 234582610 G T TARBP1 Nonsense_Mutation p.C691* 0.26 TCGA-DM-A28F-01 1 23650088 23650088 G A HNRNPR Silent p.T212T 0.36 TCGA-DM-A28F-01 1 237947429 237947429 G C RYR2 Missense_Mutation p.M4139I 0.20 benign(0.119) TCGA-DM-A28F-01 1 2411636 2411636 C T PLCH2 Missense_Mutation p.T150M 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-DM-A28F-01 1 247978212 247978212 A C OR14A16 Missense_Mutation p.F274V 0.31 deleterious(0.02) possibly_damaging(0.734) TCGA-DM-A28F-01 1 39880995 39880995 A G KIAA0754 3'UTR 0.29 TCGA-DM-A28F-01 1 63988827 63988827 C G ITGB3BP 5'UTR 0.42 TCGA-DM-A28F-01 1 6511712 6511712 A G ESPN Silent p.L655L 0.10 TCGA-DM-A28F-01 1 66384385 66384385 T G PDE4B Missense_Mutation p.L50V 0.38 tolerated_low_confidence(0.32) benign(0.01) TCGA-DM-A28F-01 1 75038283 75038283 C T C1orf173 Silent p.E1037E 0.34 TCGA-DM-A28F-01 1 75038286 75038286 A T C1orf173 Silent p.T1036T 0.34 TCGA-DM-A28F-01 1 75602896 75602896 T G LHX8 Missense_Mutation p.C73G 0.29 tolerated(0.36) benign(0.007) TCGA-DM-A28F-01 20 19496166 19496166 C T SLC24A3 Silent p.N102N 0.29 TCGA-DM-A28F-01 20 2637855 2637855 G A NOP56 Silent p.E470E 0.20 TCGA-DM-A28F-01 20 29845535 29845535 T A DEFB115 Silent p.L23L 0.17 TCGA-DM-A28F-01 20 30789792 30789792 C G PLAGL2 Missense_Mutation p.E64Q 0.11 deleterious(0.01) benign(0.255) TCGA-DM-A28F-01 20 3268301 3268301 G A C20orf194 Silent p.T821T 0.63 TCGA-DM-A28F-01 20 33584305 33584305 C T MYH7B Silent p.L1076L 0.08 TCGA-DM-A28F-01 20 43726867 43726867 G A KCNS1 Silent p.D182D 0.58 TCGA-DM-A28F-01 20 60485538 60485538 G A CDH4 Missense_Mutation p.D417N 0.51 deleterious(0) probably_damaging(0.99) TCGA-DM-A28F-01 20 62321720 62321720 C T RTEL1 Missense_Mutation p.P804L 0.14 tolerated(0.38) benign(0.012) TCGA-DM-A28F-01 21 31971144 31971144 C T KRTAP6-2 Missense_Mutation p.C17Y 0.50 unknown(0) TCGA-DM-A28F-01 21 41450664 41450664 G A DSCAM Missense_Mutation p.A1554V 0.27 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 22 18022121 18022121 C T CECR2 Silent p.Y742Y 0.21 TCGA-DM-A28F-01 22 20718568 20718568 C T USP41 Missense_Mutation p.V311M 0.17 tolerated(0.23) benign(0.091) TCGA-DM-A28F-01 22 26091109 26091109 A T ADRBK2 Missense_Mutation p.Q363L 0.34 tolerated(0.11) benign(0.005) TCGA-DM-A28F-01 22 42910712 42910712 C T RRP7A Silent p.E178E 0.08 TCGA-DM-A28F-01 22 42972542 42972542 C T SERHL2 3'Flank 0.17 TCGA-DM-A28F-01 22 43032760 43032760 G T CYB5R3 Missense_Mutation p.S71R 0.20 deleterious(0) benign(0.324) TCGA-DM-A28F-01 22 49103534 49103534 A G FAM19A5 Missense_Mutation p.I90V 0.27 deleterious(0.03) benign(0.163) TCGA-DM-A28F-01 2 107041578 107041578 C A RGPD3 Missense_Mutation p.A949S 0.20 tolerated(0.78) benign(0.018) TCGA-DM-A28F-01 2 109964358 109964358 G A SH3RF3 Missense_Mutation p.E268K 0.25 deleterious(0) probably_damaging(0.938) TCGA-DM-A28F-01 2 130738335 130738335 C T RAB6C Missense_Mutation p.T216I 0.19 tolerated_low_confidence(0.28) benign(0.001) TCGA-DM-A28F-01 2 130832920 130832920 C T POTEF Missense_Mutation p.V709I 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.454) TCGA-DM-A28F-01 2 130900571 130900571 A C CCDC74B Intron 0.31 TCGA-DM-A28F-01 2 130956000 130956000 G A TUBA3E 5'UTR 0.71 TCGA-DM-A28F-01 2 138163323 138163323 A G THSD7B Missense_Mutation p.T881A 0.25 deleterious(0) benign(0.388) TCGA-DM-A28F-01 2 152308131 152308131 C T RIF1 Silent p.F752F 0.19 TCGA-DM-A28F-01 2 166536167 166536167 A G CSRNP3 Silent p.S554S 0.23 TCGA-DM-A28F-01 2 170753174 170753174 A C UBR3 Missense_Mutation p.Q465P 0.29 deleterious(0.04) possibly_damaging(0.86) TCGA-DM-A28F-01 2 175311457 175311457 C T GPR155 Missense_Mutation p.R632H 0.24 tolerated(0.4) benign(0.004) TCGA-DM-A28F-01 2 17697661 17697661 A G RAD51AP2 Silent p.T674T 0.27 TCGA-DM-A28F-01 2 178080391 178080391 T A HNRNPA3 Splice_Site p.X65_splice 0.40 TCGA-DM-A28F-01 2 179443841 179443841 T A TTN Missense_Mutation p.K22639M 0.22 TCGA-DM-A28F-01 2 179545032 179545032 C T TTN Missense_Mutation p.A11123T 0.28 TCGA-DM-A28F-01 2 179599261 179599261 T G TTN Missense_Mutation p.E5097A 0.19 TCGA-DM-A28F-01 2 179611635 179611635 G A TTN Intron 0.49 TCGA-DM-A28F-01 2 1895920 1895920 G A MYT1L Silent p.H722H 0.43 TCGA-DM-A28F-01 2 201284141 201284141 G A SPATS2L Missense_Mutation p.E123K 0.20 deleterious(0.01) possibly_damaging(0.823) TCGA-DM-A28F-01 2 202149860 202149860 C T CASP8 Missense_Mutation p.S434L 0.24 tolerated(0.09) benign(0.085) TCGA-DM-A28F-01 2 207615686 207615686 G A MDH1B Missense_Mutation p.R342C 0.19 tolerated(0.06) benign(0.428) TCGA-DM-A28F-01 2 219892361 219892361 C T CCDC108 Intron 0.30 TCGA-DM-A28F-01 2 222290692 222290692 A T EPHA4 3'UTR 0.24 TCGA-DM-A28F-01 2 225343024 225343024 C A CUL3 Nonsense_Mutation p.E690* 0.29 TCGA-DM-A28F-01 2 238296417 238296417 C T COL6A3 Missense_Mutation p.V374M 0.27 possibly_damaging(0.769) TCGA-DM-A28F-01 2 238977965 238977965 G T SCLY Missense_Mutation p.V119L 0.27 tolerated(0.5) benign(0.005) TCGA-DM-A28F-01 2 27361068 27361068 G A C2orf53 Missense_Mutation p.L44F 0.28 tolerated(0.19) benign(0.367) TCGA-DM-A28F-01 2 32694521 32694521 C G BIRC6 Silent p.L2062L 0.34 TCGA-DM-A28F-01 2 68274411 68274411 G A C1D Missense_Mutation p.P11L 0.32 deleterious(0) probably_damaging(0.932) TCGA-DM-A28F-01 2 73679099 73679099 C G ALMS1 Silent p.S1814S 0.34 TCGA-DM-A28F-01 2 95713755 95713755 C G MAL Missense_Mutation p.P49A 0.30 tolerated(0.16) benign(0.181) TCGA-DM-A28F-01 2 95818890 95818890 A C ZNF514 Missense_Mutation p.L37V 0.16 deleterious(0.03) probably_damaging(0.982) TCGA-DM-A28F-01 3 119132940 119132940 C T ARHGAP31 Missense_Mutation p.P722S 0.46 tolerated(0.45) benign(0.001) TCGA-DM-A28F-01 3 126707613 126707613 G C PLXNA1 Missense_Mutation p.Q59H 0.40 tolerated(0.54) possibly_damaging(0.549) TCGA-DM-A28F-01 3 140281950 140281950 C G CLSTN2 Nonsense_Mutation p.S796* 0.20 TCGA-DM-A28F-01 3 186358356 186358356 G A FETUB Missense_Mutation p.C36Y 0.27 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 3 33626243 33626243 C T CLASP2 Silent p.V747V 0.26 TCGA-DM-A28F-01 3 42680839 42680839 G C NKTR Missense_Mutation p.E1215Q 0.50 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-DM-A28F-01 3 44612089 44612089 A G ZKSCAN7 Missense_Mutation p.E496G 0.11 deleterious(0.04) benign(0.168) TCGA-DM-A28F-01 3 48282705 48282705 G A ZNF589 Splice_Site p.X15_splice 0.39 TCGA-DM-A28F-01 3 48668549 48668549 G T SLC26A6 Missense_Mutation p.N337K 0.27 tolerated(0.3) benign(0.013) TCGA-DM-A28F-01 3 49148451 49148451 G T USP19 Silent p.G1157G 0.27 TCGA-DM-A28F-01 3 49212346 49212346 T G KLHDC8B Missense_Mutation p.F238C 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-DM-A28F-01 3 51671401 51671401 A G RAD54L2 Missense_Mutation p.N522D 0.08 deleterious(0.03) possibly_damaging(0.883) TCGA-DM-A28F-01 3 52395699 52395699 G A DNAH1 Missense_Mutation p.D1633N 0.35 probably_damaging(1) TCGA-DM-A28F-01 3 55504094 55504094 C T WNT5A 3'UTR 0.46 TCGA-DM-A28F-01 3 58849544 58849544 C T C3orf67 Missense_Mutation p.D320N 0.40 tolerated(0.1) benign(0.099) TCGA-DM-A28F-01 3 78685075 78685075 G A ROBO1 Missense_Mutation p.A1074V 0.39 deleterious(0) probably_damaging(0.97) TCGA-DM-A28F-01 3 98110155 98110155 T G OR5K3 Missense_Mutation p.Y216D 0.36 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 4 120213823 120213823 C G USP53 Missense_Mutation p.N893K 0.34 tolerated_low_confidence(0.26) benign(0.001) TCGA-DM-A28F-01 4 123342497 123342497 A G ADAD1 Silent p.K523K 0.31 TCGA-DM-A28F-01 4 126237573 126237573 T G FAT4 Missense_Mutation p.L3V 0.33 benign(0.332) TCGA-DM-A28F-01 4 126240719 126240719 A G FAT4 Silent p.Q1051Q 0.37 TCGA-DM-A28F-01 4 177713369 177713369 C T VEGFC Missense_Mutation p.E33K 0.43 tolerated(0.1) benign(0.374) TCGA-DM-A28F-01 4 26322342 26322342 A T RBPJ 5'UTR 0.45 TCGA-DM-A28F-01 4 5418603 5418603 G A STK32B Silent p.A168A 0.29 TCGA-DM-A28F-01 4 6304187 6304187 G A WFS1 Missense_Mutation p.A889T 0.38 tolerated(0.27) possibly_damaging(0.731) TCGA-DM-A28F-01 4 65188510 65188510 C A TECRL Missense_Mutation p.G111V 0.27 deleterious(0.01) probably_damaging(0.921) TCGA-DM-A28F-01 4 71255496 71255496 G T SMR3B Silent p.G57G 0.29 TCGA-DM-A28F-01 4 75937687 75937687 G A PARM1 Silent p.P32P 0.22 TCGA-DM-A28F-01 4 84188759 84188759 C T COQ2 Missense_Mutation p.G361R 0.41 deleterious(0.01) possibly_damaging(0.725) TCGA-DM-A28F-01 4 88535233 88535233 C A DSPP Silent p.G473G 0.42 TCGA-DM-A28F-01 4 99579316 99579316 C A TSPAN5 Missense_Mutation p.G21V 0.30 tolerated(0.14) benign(0.148) TCGA-DM-A28F-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.42 TCGA-DM-A28F-01 5 112175530 112175530 G - APC Frame_Shift_Del p.V1414* 0.24 TCGA-DM-A28F-01 5 129015571 129015571 A C ADAMTS19 Missense_Mutation p.K868T 0.34 tolerated(0.14) probably_damaging(0.966) TCGA-DM-A28F-01 5 132197714 132197714 C T GDF9 Missense_Mutation p.R311K 0.39 tolerated(0.34) benign(0.128) TCGA-DM-A28F-01 5 13841175 13841175 T G DNAH5 Missense_Mutation p.K1850T 0.39 benign(0.403) TCGA-DM-A28F-01 5 140605532 140605532 T A PCDHB14 3'UTR 0.36 TCGA-DM-A28F-01 5 140751825 140751825 C T PCDHGB3 Missense_Mutation p.R622C 0.32 deleterious(0.01) benign(0.383) TCGA-DM-A28F-01 5 141025445 141025445 C A FCHSD1 Missense_Mutation p.D402Y 0.08 deleterious(0.03) probably_damaging(0.977) TCGA-DM-A28F-01 5 145435706 145435706 G A SH3RF2 Silent p.V495V 0.31 TCGA-DM-A28F-01 5 148632383 148632383 G T ABLIM3 Missense_Mutation p.D641Y 0.46 deleterious(0) probably_damaging(0.98) TCGA-DM-A28F-01 5 148686978 148686978 C T AFAP1L1 Silent p.D183D 0.39 TCGA-DM-A28F-01 5 161112862 161112862 T C GABRA6 5'UTR 0.23 TCGA-DM-A28F-01 5 168222582 168222582 G A SLIT3 Missense_Mutation p.R313C 0.33 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 5 175933767 175933767 A T FAF2 Splice_Site p.X386_splice 0.36 TCGA-DM-A28F-01 5 178392557 178392557 T C ZNF454 Silent p.Y384Y 0.20 TCGA-DM-A28F-01 5 178771008 178771008 G A ADAMTS2 Silent p.P98P 0.45 TCGA-DM-A28F-01 5 35876302 35876302 C A IL7R Nonsense_Mutation p.S365* 0.23 TCGA-DM-A28F-01 5 37815902 37815902 A C GDNF Missense_Mutation p.L180V 0.37 deleterious(0) probably_damaging(0.991) TCGA-DM-A28F-01 5 40853383 40853383 C T CARD6 Missense_Mutation p.A650V 0.34 deleterious(0) probably_damaging(0.94) TCGA-DM-A28F-01 5 54710031 54710031 A G SKIV2L2 Missense_Mutation p.T925A 0.38 tolerated(0.33) benign(0.05) TCGA-DM-A28F-01 5 73981382 73981382 A G HEXB Silent p.R99R 0.12 TCGA-DM-A28F-01 6 12124160 12124160 A G HIVEP1 Missense_Mutation p.M1378V 0.23 tolerated(0.31) benign(0.109) TCGA-DM-A28F-01 6 121434312 121434312 A - TBC1D32 Frame_Shift_Del p.F1022Sfs*5 0.22 TCGA-DM-A28F-01 6 121768962 121768962 G A GJA1 Silent p.A323A 0.31 TCGA-DM-A28F-01 6 127476478 127476478 C T RSPO3 Nonsense_Mutation p.R177* 0.33 TCGA-DM-A28F-01 6 136554622 136554622 T C MTFR2 Silent p.R295R 0.09 TCGA-DM-A28F-01 6 143081563 143081563 G A HIVEP2 Silent p.P1954P 0.36 TCGA-DM-A28F-01 6 146261868 146261869 CT - SHPRH Frame_Shift_Del p.G854Ifs*14 0.24 TCGA-DM-A28F-01 6 152470650 152470650 G A SYNE1 Missense_Mutation p.R8202C 0.38 probably_damaging(0.998) TCGA-DM-A28F-01 6 24423417 24423417 T C MRS2 Intron 0.10 TCGA-DM-A28F-01 6 28228098 28228098 C T NKAPL Nonsense_Mutation p.R317* 0.21 TCGA-DM-A28F-01 6 32975854 32975854 G A HLA-DOA Silent p.I89I 0.48 TCGA-DM-A28F-01 6 34511927 34511927 C T SPDEF Silent p.A102A 0.60 TCGA-DM-A28F-01 6 39507805 39507805 C A KIF6 Missense_Mutation p.R540I 0.37 deleterious(0.02) possibly_damaging(0.512) TCGA-DM-A28F-01 6 53364945 53364945 G C GCLC Missense_Mutation p.L534V 0.33 deleterious(0.02) possibly_damaging(0.85) TCGA-DM-A28F-01 6 53706939 53706939 T - LRRC1 Frame_Shift_Del p.G65Dfs*14 0.31 TCGA-DM-A28F-01 6 56380295 56380295 G C DST Missense_Mutation p.P3554A 0.34 probably_damaging(0.999) TCGA-DM-A28F-01 6 76782260 76782260 T C IMPG1 5'UTR 0.36 TCGA-DM-A28F-01 6 87966978 87966978 A G ZNF292 Missense_Mutation p.I1211V 0.40 tolerated(0.18) benign(0.002) TCGA-DM-A28F-01 7 121651971 121651971 T G PTPRZ1 Silent p.T957T 0.26 TCGA-DM-A28F-01 7 142622670 142622670 C T TRPV5 Missense_Mutation p.R359H 0.52 tolerated(0.4) benign(0.006) TCGA-DM-A28F-01 7 150937602 150937602 C A SMARCD3 Missense_Mutation p.D316Y 0.25 deleterious(0.01) possibly_damaging(0.793) TCGA-DM-A28F-01 7 158557383 158557383 C G ESYT2 Missense_Mutation p.W410C 0.26 deleterious(0) probably_damaging(0.996) TCGA-DM-A28F-01 7 23830536 23830536 T G STK31 Missense_Mutation p.L911V 0.08 tolerated(0.05) possibly_damaging(0.824) TCGA-DM-A28F-01 7 32609670 32609670 T G AVL9 Missense_Mutation p.H418Q 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-DM-A28F-01 7 34997656 34997656 C G DPY19L1 Missense_Mutation p.L300F 0.50 tolerated(0.11) possibly_damaging(0.734) TCGA-DM-A28F-01 7 42949444 42949444 T G C7orf25 Silent p.S410S 0.17 TCGA-DM-A28F-01 7 43447158 43447158 T G HECW1 Intron 0.16 TCGA-DM-A28F-01 7 48312083 48312083 A C ABCA13 Missense_Mutation p.E940D 0.16 benign(0.012) TCGA-DM-A28F-01 7 57193737 57193737 C T ZNF479 Missense_Mutation p.A84T 0.13 tolerated(0.13) benign(0.007) TCGA-DM-A28F-01 7 65705836 65705836 T A TPST1 Missense_Mutation p.L142I 0.19 tolerated(1) benign(0.023) TCGA-DM-A28F-01 7 7278181 7278181 G A C1GALT1 Silent p.T172T 0.71 TCGA-DM-A28F-01 7 89929187 89929187 C G C7orf63 Missense_Mutation p.Q622E 0.26 tolerated(0.53) benign(0.002) TCGA-DM-A28F-01 7 92080017 92080017 C T GATAD1 Silent p.P126P 0.46 TCGA-DM-A28F-01 7 92404129 92404129 T A CDK6 Missense_Mutation p.T84S 0.17 tolerated(0.5) benign(0.162) TCGA-DM-A28F-01 8 101253335 101253335 T C SPAG1 3'UTR 0.12 TCGA-DM-A28F-01 8 110497366 110497366 C A PKHD1L1 Missense_Mutation p.L3224I 0.16 tolerated(0.08) benign(0.166) TCGA-DM-A28F-01 8 135613756 135613756 G A ZFAT Missense_Mutation p.R736W 0.20 deleterious(0) probably_damaging(0.991) TCGA-DM-A28F-01 8 144993272 144993272 C T PLEC Missense_Mutation p.D3710N 0.50 benign(0.18) TCGA-DM-A28F-01 8 145759557 145759557 A C ARHGAP39 Missense_Mutation p.C882G 0.17 deleterious(0) possibly_damaging(0.542) TCGA-DM-A28F-01 8 59750825 59750825 G T TOX Missense_Mutation p.P247T 0.20 deleterious(0.03) benign(0.244) TCGA-DM-A28F-01 8 79710421 79710421 T A IL7 Silent p.G11G 0.59 TCGA-DM-A28F-01 8 86351115 86351115 C T CA3 5'UTR 0.23 TCGA-DM-A28F-01 8 97157039 97157039 C T GDF6 Missense_Mutation p.A374T 0.14 deleterious(0) probably_damaging(0.999) TCGA-DM-A28F-01 9 107607822 107607822 G A ABCA1 Missense_Mutation p.P250L 0.33 tolerated(0.72) benign(0) TCGA-DM-A28F-01 9 109690322 109690322 G A ZNF462 Missense_Mutation p.E1377K 0.33 probably_damaging(0.988) TCGA-DM-A28F-01 9 116059724 116059724 T G RNF183 3'Flank 0.56 TCGA-DM-A28F-01 9 119858344 119858344 G A ASTN2 Missense_Mutation p.R368C 0.33 deleterious_low_confidence(0) unknown(0) TCGA-DM-A28F-01 9 129646093 129646093 G C ZBTB34 3'UTR 0.15 TCGA-DM-A28F-01 9 136582508 136582508 C T SARDH Missense_Mutation p.A364T 0.23 deleterious(0.01) probably_damaging(0.909) TCGA-DM-A28F-01 9 137969005 137969005 C A OLFM1 Intron 0.29 TCGA-DM-A28F-01 9 139265089 139265089 G A CARD9 Missense_Mutation p.T231M 0.41 deleterious(0) probably_damaging(0.993) TCGA-DM-A28F-01 9 140674089 140674089 C A EHMT1 Missense_Mutation p.P732H 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-DM-A28F-01 9 14125696 14125696 G A NFIB Missense_Mutation p.S332F 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-DM-A28F-01 9 16552635 16552635 T C BNC2 Missense_Mutation p.I188V 0.40 deleterious(0) probably_damaging(0.978) TCGA-DM-A28F-01 9 32542034 32542034 G A TOPORS Missense_Mutation p.S830L 0.29 tolerated(0.06) unknown(0) TCGA-DM-A28F-01 9 5787593 5787593 C T ERMP1 Missense_Mutation p.G796E 0.17 deleterious(0) probably_damaging(0.946) TCGA-DM-A28F-01 9 5787594 5787594 C T ERMP1 Splice_Site p.X796_splice 0.17 TCGA-DM-A28F-01 9 69256790 69256790 C G CBWD6 Intron 0.13 TCGA-DM-A28F-01 9 80851306 80851306 G C CEP78 Missense_Mutation p.D14H 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-DM-A28F-01 9 842052 842052 C T DMRT1 Missense_Mutation p.R72W 0.32 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 9 84235438 84235438 C T TLE1 Missense_Mutation p.G210D 0.30 tolerated(0.4) benign(0.003) TCGA-DM-A28F-01 9 8454596 8454596 T C PTPRD Intron 0.09 TCGA-DM-A28F-01 9 86900373 86900373 C A SLC28A3 Missense_Mutation p.G512C 0.41 deleterious(0) probably_damaging(1) TCGA-DM-A28F-01 9 95609219 95609219 A T ZNF484 Missense_Mutation p.F619Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-DM-A28F-01 X 109922626 109922626 T G CHRDL1 Missense_Mutation p.K395T 0.09 tolerated(0.14) benign(0.008) TCGA-DM-A28F-01 X 114141574 114141574 T C HTR2C Missense_Mutation p.C325R 0.45 deleterious(0) probably_damaging(0.979) TCGA-DM-A28F-01 X 134995151 134995151 A C SAGE1 3'UTR 0.47 TCGA-DM-A28F-01 X 135862962 135862962 G A ARHGEF6 Missense_Mutation p.P27L 0.80 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DM-A28F-01 X 151817771 151817771 G T GABRQ Missense_Mutation p.Q195H 0.39 deleterious(0.02) benign(0.395) TCGA-DM-A28F-01 X 152228286 152228286 C A PNMA3 3'UTR 0.48 TCGA-DM-A28F-01 X 152615488 152615488 G C ZNF275 3'UTR 0.45 TCGA-DM-A28F-01 X 153906480 153906480 G A GAB3 Missense_Mutation p.T580M 0.32 deleterious(0) probably_damaging(0.999) TCGA-DM-A28F-01 X 70146389 70146389 G A SLC7A3 Silent p.P536P 0.79 TCGA-DM-A28G-01 10 26359077 26359077 G A MYO3A Missense_Mutation p.S403N 0.28 tolerated(1) benign(0) TCGA-DM-A28G-01 10 26442854 26442854 C A MYO3A Missense_Mutation p.A904E 0.32 tolerated(0.27) benign(0.219) TCGA-DM-A28G-01 10 50028301 50028301 G A WDFY4 Missense_Mutation p.R1843Q 0.39 tolerated(0.81) benign(0.001) TCGA-DM-A28G-01 10 55955445 55955445 C A PCDH15 Missense_Mutation p.D435Y 0.39 deleterious(0.01) probably_damaging(0.961) TCGA-DM-A28G-01 10 68687867 68687867 C T LRRTM3 Missense_Mutation p.T398M 0.23 deleterious(0.02) possibly_damaging(0.775) TCGA-DM-A28G-01 10 72297623 72297623 C A PALD1 Nonsense_Mutation p.Y428* 0.33 TCGA-DM-A28G-01 10 7247872 7247872 G A SFMBT2 Missense_Mutation p.P450L 0.11 deleterious(0) probably_damaging(0.991) TCGA-DM-A28G-01 10 87484181 87484181 G A GRID1 Nonsense_Mutation p.Q596* 0.34 TCGA-DM-A28G-01 11 26663472 26663472 A C ANO3 Missense_Mutation p.K724T 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-DM-A28G-01 11 47612120 47612120 C T C1QTNF4 Silent p.T81T 0.46 TCGA-DM-A28G-01 11 609265 609265 T C PHRF1 Missense_Mutation p.V1269A 0.28 tolerated(0.05) benign(0.025) TCGA-DM-A28G-01 11 62549652 62549652 G A TAF6L Missense_Mutation p.R225H 0.32 tolerated(0.33) benign(0.018) TCGA-DM-A28G-01 11 82443494 82443494 G A FAM181B Silent p.D426D 0.38 TCGA-DM-A28G-01 12 100048910 100048910 C A ANKS1B Nonsense_Mutation p.G403* 0.47 TCGA-DM-A28G-01 12 109186131 109186131 G A SSH1 Silent p.L608L 0.09 TCGA-DM-A28G-01 12 115118902 115118903 - T TBX3 Frame_Shift_Ins p.A147Sfs*13 0.30 TCGA-DM-A28G-01 12 13103257 13103257 G A GPRC5D Missense_Mutation p.P21L 0.30 tolerated(0.15) benign(0.05) TCGA-DM-A28G-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.38 deleterious(0) benign(0.371) TCGA-DM-A28G-01 12 44166014 44166014 T C IRAK4 Silent p.P113P 0.12 TCGA-DM-A28G-01 12 49942920 49942920 G A KCNH3 Missense_Mutation p.E478K 0.41 deleterious(0) probably_damaging(0.999) TCGA-DM-A28G-01 12 50192176 50192176 G A NCKAP5L Missense_Mutation p.P141L 0.19 tolerated(0.81) benign(0.005) TCGA-DM-A28G-01 12 57033927 57033927 G A ATP5B Missense_Mutation p.T375M 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DM-A28G-01 12 66700196 66700196 C T HELB Nonsense_Mutation p.R227* 0.40 TCGA-DM-A28G-01 12 67072642 67072642 G A GRIP1 Nonsense_Mutation p.R15* 0.42 TCGA-DM-A28G-01 12 75756909 75756909 C T GLIPR1L1 Silent p.Y183Y 0.29 TCGA-DM-A28G-01 13 101755614 101755614 C T NALCN Missense_Mutation p.R989Q 0.46 deleterious(0) probably_damaging(1) TCGA-DM-A28G-01 13 21381607 21381607 A T XPO4 Missense_Mutation p.D602E 0.32 deleterious(0.01) benign(0.272) TCGA-DM-A28G-01 13 23911709 23911709 C A SACS Missense_Mutation p.L2102F 0.42 possibly_damaging(0.504) TCGA-DM-A28G-01 13 25670328 25670328 G A PABPC3 5'UTR 0.65 TCGA-DM-A28G-01 13 76378527 76378527 C T LMO7 Missense_Mutation p.A22V 0.27 deleterious(0.03) possibly_damaging(0.509) TCGA-DM-A28G-01 14 45583808 45583808 G A PRPF39 Silent p.A648A 0.22 TCGA-DM-A28G-01 14 58678063 58678063 A G ACTR10 Silent p.G132G 0.32 TCGA-DM-A28G-01 14 69584894 69584894 C T DCAF5 Missense_Mutation p.R166Q 0.25 tolerated(0.16) benign(0.033) TCGA-DM-A28G-01 15 29397623 29397623 G T APBA2 Silent p.V522V 0.45 TCGA-DM-A28G-01 15 40627561 40627561 G A C15orf52 Missense_Mutation p.A468V 0.39 tolerated(0.06) benign(0.081) TCGA-DM-A28G-01 15 55974689 55974689 A G PRTG Silent p.T183T 0.24 TCGA-DM-A28G-01 15 89402423 89402423 T C ACAN Missense_Mutation p.S2203P 0.08 deleterious(0.01) benign(0.302) TCGA-DM-A28G-01 16 2283533 2283533 G A E4F1 Missense_Mutation p.R384H 0.26 deleterious(0.01) probably_damaging(0.932) TCGA-DM-A28G-01 16 29677392 29677392 C T SPN 3'UTR 0.07 TCGA-DM-A28G-01 16 3614177 3614177 C T NLRC3 Missense_Mutation p.R301H 0.29 deleterious(0) probably_damaging(0.995) TCGA-DM-A28G-01 16 71007767 71007767 C T HYDIN Missense_Mutation p.E1732K 0.19 probably_damaging(0.953) TCGA-DM-A28G-01 17 10535191 10535191 C T MYH3 Missense_Mutation p.R1700Q 0.31 deleterious(0) probably_damaging(0.988) TCGA-DM-A28G-01 17 3945749 3945749 C T ZZEF1 Missense_Mutation p.A2094T 0.35 deleterious(0) probably_damaging(0.977) TCGA-DM-A28G-01 17 56573143 56573143 G A MTMR4 Missense_Mutation p.T787I 0.43 tolerated_low_confidence(0.44) benign(0.001) TCGA-DM-A28G-01 17 7370091 7370091 C T ZBTB4 Silent p.P10P 0.36 TCGA-DM-A28G-01 17 74569389 74569389 G A ST6GALNAC2 Missense_Mutation p.P140S 0.25 benign(0.005) TCGA-DM-A28G-01 17 7842994 7842994 A G CNTROB Missense_Mutation p.Q364R 0.08 deleterious(0.05) benign(0.407) TCGA-DM-A28G-01 17 79429840 79429840 C T RP11-1055B8.7 Silent p.V2486V 0.36 TCGA-DM-A28G-01 17 80039902 80039902 C T FASN Missense_Mutation p.R2049Q 0.40 tolerated(0.4) benign(0.06) TCGA-DM-A28G-01 18 45556065 45556065 G A ZBTB7C Missense_Mutation p.R476W 0.40 deleterious(0) possibly_damaging(0.756) TCGA-DM-A28G-01 18 56985669 56985671 ATC - CPLX4 In_Frame_Del p.M8del 0.31 TCGA-DM-A28G-01 18 67781813 67781813 A G RTTN Missense_Mutation p.L1184P 0.10 deleterious(0) probably_damaging(0.999) TCGA-DM-A28G-01 19 1014296 1014296 G A TMEM259 Silent p.R134R 0.29 TCGA-DM-A28G-01 19 11338139 11338139 C T DOCK6 Silent p.A943A 0.41 TCGA-DM-A28G-01 19 12244486 12244486 T A ZNF20 Missense_Mutation p.D172V 0.39 tolerated(0.07) benign(0.01) TCGA-DM-A28G-01 19 1913343 1913343 G A ADAT3 3'UTR 0.39 TCGA-DM-A28G-01 19 21300402 21300402 C T ZNF714 Missense_Mutation p.S311F 0.38 deleterious(0.04) possibly_damaging(0.66) TCGA-DM-A28G-01 19 22271839 22271839 A G ZNF257 Silent p.K429K 0.43 TCGA-DM-A28G-01 19 36884354 36884354 G T ZFP82 Missense_Mutation p.H296Q 0.32 tolerated(1) probably_damaging(0.999) TCGA-DM-A28G-01 19 3778229 3778229 T C MATK Silent p.S493S 0.17 TCGA-DM-A28G-01 19 40433052 40433052 G A FCGBP Missense_Mutation p.T406M 0.27 benign(0.02) TCGA-DM-A28G-01 19 4695566 4695566 C T DPP9 Missense_Mutation p.A393T 0.39 deleterious(0.02) probably_damaging(0.977) TCGA-DM-A28G-01 19 5238958 5238958 G A PTPRS Silent p.P607P 0.39 TCGA-DM-A28G-01 19 53794735 53794735 C G BIRC8 5'UTR 0.31 TCGA-DM-A28G-01 19 54314208 54314208 C T NLRP12 Silent p.A235A 0.26 TCGA-DM-A28G-01 19 54745923 54745923 G A LILRA6 Missense_Mutation p.P112S 0.17 tolerated(0.07) probably_damaging(0.977) TCGA-DM-A28G-01 19 56388483 56388483 C A NLRP4 Missense_Mutation p.L883M 0.31 tolerated(0.08) probably_damaging(0.985) TCGA-DM-A28G-01 19 57335016 57335016 G A PEG3 Silent p.D142D 0.30 TCGA-DM-A28G-01 19 58639978 58639978 C T ZNF329 Missense_Mutation p.R298Q 0.33 tolerated(1) probably_damaging(0.973) TCGA-DM-A28G-01 19 8808937 8808937 C T ACTL9 Missense_Mutation p.G39S 0.43 tolerated(0.95) benign(0.001) TCGA-DM-A28G-01 19 9028245 9028245 G A MUC16 Missense_Mutation p.R12183W 0.33 probably_damaging(0.923) TCGA-DM-A28G-01 1 104112170 104112170 T C AMY2B Intron 0.12 TCGA-DM-A28G-01 1 110280751 110280751 G A GSTM3 Missense_Mutation p.R112C 0.32 tolerated(0.07) probably_damaging(0.977) TCGA-DM-A28G-01 1 155317648 155317648 T G ASH1L Silent p.L2534L 0.46 TCGA-DM-A28G-01 1 156563681 156563681 C T APOA1BP Silent p.D224D 0.57 TCGA-DM-A28G-01 1 158592893 158592893 G A SPTA1 Silent p.H2000H 0.34 TCGA-DM-A28G-01 1 196646623 196646623 G A CFH Missense_Mutation p.V149M 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-DM-A28G-01 1 226016494 226016494 G T EPHX1 Missense_Mutation p.D22Y 0.29 deleterious(0.03) benign(0.258) TCGA-DM-A28G-01 1 228486974 228486974 T C OBSCN Missense_Mutation p.F4409L 0.08 possibly_damaging(0.49) TCGA-DM-A28G-01 1 23418734 23418735 - C LUZP1 Frame_Shift_Ins p.V674Gfs*16 0.25 TCGA-DM-A28G-01 1 23689237 23689238 - GATG ZNF436 Frame_Shift_Ins p.Q213Pfs*14 0.32 TCGA-DM-A28G-01 1 36354184 36354184 C A AGO1 Missense_Mutation p.P61Q 0.09 deleterious(0) probably_damaging(1) TCGA-DM-A28G-01 1 41976584 41976584 G A HIVEP3 Silent p.S2253S 0.27 TCGA-DM-A28G-01 1 51767205 51767205 C T TTC39A Intron 0.26 TCGA-DM-A28G-01 1 52769533 52769533 G T ZFYVE9 Missense_Mutation p.G1125V 0.38 deleterious(0) probably_damaging(1) TCGA-DM-A28G-01 1 82408704 82408704 A G LPHN2 Missense_Mutation p.Y150C 0.33 deleterious(0.02) possibly_damaging(0.819) TCGA-DM-A28G-01 1 90152117 90152117 G A LRRC8C Missense_Mutation p.D29N 0.40 deleterious(0.02) possibly_damaging(0.554) TCGA-DM-A28G-01 1 92163655 92163655 T A TGFBR3 Missense_Mutation p.I774F 0.31 tolerated(0.06) benign(0.002) TCGA-DM-A28G-01 1 93586105 93586105 G A MTF2 Splice_Site p.X266_splice 0.23 TCGA-DM-A28G-01 1 97544521 97544521 C T DPYD 3'UTR 0.34 TCGA-DM-A28G-01 20 3147732 3147732 G A LZTS3 Silent p.S26S 0.40 TCGA-DM-A28G-01 20 40748596 40748596 G A PTPRT Missense_Mutation p.R955W 0.45 deleterious(0) probably_damaging(0.999) TCGA-DM-A28G-01 20 46318876 46318876 T C SULF2 Missense_Mutation p.Q244R 0.11 tolerated(0.08) possibly_damaging(0.555) TCGA-DM-A28G-01 20 61299121 61299121 C A SLCO4A1 Missense_Mutation p.N499K 0.31 tolerated(0.13) benign(0.082) TCGA-DM-A28G-01 21 18965641 18965641 T G BTG3 3'Flank 0.29 TCGA-DM-A28G-01 21 26965234 26965234 T C MRPL39 Missense_Mutation p.R271G 0.30 deleterious(0.02) possibly_damaging(0.772) TCGA-DM-A28G-01 21 27141326 27141326 A G GABPA Missense_Mutation p.D383G 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-DM-A28G-01 2 11323489 11323489 C T ROCK2 3'UTR 0.28 TCGA-DM-A28G-01 2 141113957 141113957 G T LRP1B Silent p.R3828R 0.37 TCGA-DM-A28G-01 2 168107544 168107544 C G XIRP2 Missense_Mutation p.I3214M 0.21 probably_damaging(0.942) TCGA-DM-A28G-01 2 170134406 170134406 C T LRP2 Missense_Mutation p.A541T 0.37 probably_damaging(1) TCGA-DM-A28G-01 2 179639720 179639720 C G TTN Missense_Mutation p.D2240H 0.16 TCGA-DM-A28G-01 2 196756382 196756382 T G DNAH7 Silent p.S1681S 0.32 TCGA-DM-A28G-01 2 223066812 223066812 G A PAX3 Missense_Mutation p.T424M 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-DM-A28G-01 2 230667084 230667084 T C TRIP12 Silent p.G955G 0.39 TCGA-DM-A28G-01 2 26178469 26178469 G A KIF3C Missense_Mutation p.R571W 0.34 possibly_damaging(0.451) TCGA-DM-A28G-01 2 71742846 71742846 C T DYSF Missense_Mutation p.R285W 0.36 deleterious(0) probably_damaging(0.998) TCGA-DM-A28G-01 3 10387813 10387813 C A ATP2B2 Missense_Mutation p.D805Y 0.47 deleterious(0) probably_damaging(1) TCGA-DM-A28G-01 3 124420958 124420958 T G KALRN Missense_Mutation p.I993M 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A28G-01 3 124631969 124631969 C T MUC13 Silent p.G400G 0.30 TCGA-DM-A28G-01 3 137890492 137890492 G A DBR1 Missense_Mutation p.S129F 0.35 deleterious(0.01) benign(0.304) TCGA-DM-A28G-01 3 172165640 172165640 G A GHSR Silent p.N188N 0.31 TCGA-DM-A28G-01 3 173996893 173996893 G A NLGN1 Missense_Mutation p.D368N 0.32 tolerated(0.12) probably_damaging(0.984) TCGA-DM-A28G-01 3 183479392 183479392 C T YEATS2 Missense_Mutation p.A585V 0.38 tolerated_low_confidence(0.07) benign(0.231) TCGA-DM-A28G-01 3 183824060 183824060 C T HTR3E Missense_Mutation p.P383L 0.41 deleterious(0.04) benign(0.117) TCGA-DM-A28G-01 3 190366443 190366443 G T IL1RAP Intron 0.29 TCGA-DM-A28G-01 3 89259093 89259093 C A EPHA3 Missense_Mutation p.N79K 0.31 deleterious(0) probably_damaging(0.994) TCGA-DM-A28G-01 4 126372997 126372997 A G FAT4 Missense_Mutation p.D3609G 0.29 probably_damaging(0.999) TCGA-DM-A28G-01 4 147724671 147724671 C A TTC29 Missense_Mutation p.S423I 0.29 tolerated(0.06) benign(0.206) TCGA-DM-A28G-01 4 153247288 153247288 C T FBXW7 Missense_Mutation p.R505H 0.34 deleterious(0) probably_damaging(1) TCGA-DM-A28G-01 4 155407 155407 T C ZNF718 RNA 0.10 TCGA-DM-A28G-01 4 158091585 158091585 T A GLRB Missense_Mutation p.V400D 0.36 tolerated(0.08) possibly_damaging(0.711) TCGA-DM-A28G-01 4 20884318 20884318 G T KCNIP4 Missense_Mutation p.Q26K 0.23 tolerated_low_confidence(0.35) benign(0.292) TCGA-DM-A28G-01 4 266043 266043 G T ZNF732 Silent p.G201G 0.47 TCGA-DM-A28G-01 4 36126564 36126564 A G ARAP2 Silent p.I1222I 0.09 TCGA-DM-A28G-01 4 41984953 41984953 C T DCAF4L1 Silent p.L382L 0.29 TCGA-DM-A28G-01 4 44450184 44450184 C T KCTD8 Silent p.A119A 0.44 TCGA-DM-A28G-01 4 76522314 76522314 C T CDKL2 Missense_Mutation p.S376N 0.32 tolerated(0.17) benign(0.005) TCGA-DM-A28G-01 4 8582778 8582778 C T GPR78 Silent p.N23N 0.42 TCGA-DM-A28G-01 5 126154715 126154715 G A LMNB1 Silent p.A347A 0.34 TCGA-DM-A28G-01 5 140168309 140168309 A G PCDHA1 Intron 0.33 TCGA-DM-A28G-01 5 140751299 140751299 C T PCDHGB3 Silent p.N446N 0.48 TCGA-DM-A28G-01 5 178454540 178454540 G T ZNF879 Missense_Mutation p.A34S 0.34 tolerated(0.62) possibly_damaging(0.487) TCGA-DM-A28G-01 5 464508 464508 T C EXOC3 Missense_Mutation p.I586T 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-DM-A28G-01 6 27841168 27841168 G A HIST1H4L Missense_Mutation p.R41C 0.30 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-DM-A28G-01 6 30891010 30891010 T C VARS2 Splice_Site p.X801_splice 0.36 TCGA-DM-A28G-01 6 31513926 31513926 C T ATP6V1G2 Missense_Mutation p.R48H 0.31 deleterious(0.03) possibly_damaging(0.871) TCGA-DM-A28G-01 6 38690897 38690897 G A DNAH8 5'Flank 0.32 TCGA-DM-A28G-01 6 47846395 47846395 A C PTCHD4 Missense_Mutation p.C729G 0.32 tolerated(0.07) probably_damaging(0.977) TCGA-DM-A28G-01 6 47976377 47976377 G A PTCHD4 Silent p.F300F 0.35 TCGA-DM-A28G-01 6 50803865 50803865 C T TFAP2B Silent p.C231C 0.38 TCGA-DM-A28G-01 6 70965039 70965039 C T COL9A1 Splice_Site p.X519_splice 0.28 TCGA-DM-A28G-01 7 100230624 100230624 C T TFR2 Silent p.K283K 0.32 TCGA-DM-A28G-01 7 102100216 102100216 G A ALKBH4 Silent p.T52T 0.24 TCGA-DM-A28G-01 7 137792235 137792235 C A AKR1D1 Missense_Mutation p.A255E 0.28 deleterious(0) probably_damaging(0.937) TCGA-DM-A28G-01 7 137792253 137792253 G A AKR1D1 Missense_Mutation p.R261H 0.29 deleterious(0.02) probably_damaging(1) TCGA-DM-A28G-01 7 148963691 148963691 C T ZNF783 Missense_Mutation p.A97V 0.18 tolerated(0.26) possibly_damaging(0.532) TCGA-DM-A28G-01 7 151845781 151845781 C T KMT2C Missense_Mutation p.G4411R 0.10 probably_damaging(1) TCGA-DM-A28G-01 7 21784557 21784557 C T DNAH11 Missense_Mutation p.P2803S 0.38 benign(0.043) TCGA-DM-A28G-01 7 3991467 3991467 G A SDK1 Silent p.A355A 0.32 TCGA-DM-A28G-01 7 53103790 53103790 G A POM121L12 Silent p.A142A 0.23 TCGA-DM-A28G-01 7 87195425 87195425 G A ABCB1 Silent p.I221I 0.39 TCGA-DM-A28G-01 7 92019350 92019350 C T ANKIB1 Missense_Mutation p.R658C 0.34 deleterious(0) probably_damaging(0.99) TCGA-DM-A28G-01 7 95001618 95001618 C T PON3 Silent p.A78A 0.44 TCGA-DM-A28G-01 8 104927760 104927760 G C RIMS2 Missense_Mutation p.C617S 0.24 tolerated_low_confidence(0.12) probably_damaging(0.992) TCGA-DM-A28G-01 8 142486181 142486182 - A MROH5 Intron 0.42 TCGA-DM-A28G-01 8 17822263 17822263 G A PCM1 Silent p.K947K 0.62 TCGA-DM-A28G-01 8 18666338 18666338 A G PSD3 Intron 0.08 TCGA-DM-A28G-01 8 2966165 2966165 G A CSMD1 Silent p.S2238S 0.59 TCGA-DM-A28G-01 8 55542599 55542599 G C RP1 Missense_Mutation p.D2053H 0.24 tolerated(0.1) benign(0.023) TCGA-DM-A28G-01 8 65494848 65494848 C T BHLHE22 3'UTR 0.20 TCGA-DM-A28G-01 9 107266629 107266629 C T OR13F1 Missense_Mutation p.A29V 0.44 tolerated(1) benign(0) TCGA-DM-A28G-01 9 136513027 136513027 G A DBH Missense_Mutation p.A362T 0.53 deleterious(0.01) probably_damaging(0.994) TCGA-DM-A28G-01 9 5922172 5922172 C T KIAA2026 Missense_Mutation p.R1275K 0.35 deleterious(0) probably_damaging(0.953) TCGA-DM-A28G-01 9 90500911 90500911 C A SPATA31E1 Silent p.P503P 0.33 TCGA-DM-A28G-01 9 94487006 94487006 G A ROR2 Silent p.P590P 0.16 TCGA-DM-A28G-01 X 102472096 102472096 C T BEX4 3'UTR 0.72 TCGA-DM-A28G-01 X 128640172 128640172 C T SMARCA1 Missense_Mutation p.R328H 0.51 deleterious(0) probably_damaging(1) TCGA-DM-A28G-01 X 152031207 152031207 A G NSDHL Missense_Mutation p.D161G 0.10 deleterious(0.01) possibly_damaging(0.61) TCGA-DM-A28G-01 X 46359261 46359261 C T ZNF674 3'UTR 0.82 TCGA-DM-A28H-01 10 127677875 127677875 A T FANK1 Intron 0.40 TCGA-DM-A28H-01 10 127677877 127677877 A T FANK1 Intron 0.40 TCGA-DM-A28H-01 10 46968696 46968696 G A SYT15 Silent p.P80P 0.17 TCGA-DM-A28H-01 10 50690872 50690872 G A ERCC6 Missense_Mutation p.P677L 0.37 deleterious(0) probably_damaging(1) TCGA-DM-A28H-01 10 5693279 5693279 G A ASB13 Silent p.C93C 0.50 TCGA-DM-A28H-01 10 69699377 69699377 C A HERC4 Missense_Mutation p.D855Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-DM-A28H-01 10 69970184 69970184 G A MYPN Missense_Mutation p.R1312Q 0.48 tolerated(0.94) benign(0.002) TCGA-DM-A28H-01 11 103026130 103026130 G A DYNC2H1 Missense_Mutation p.R1215H 0.35 possibly_damaging(0.743) TCGA-DM-A28H-01 11 125547898 125547898 C T ACRV1 Missense_Mutation p.G116E 0.40 deleterious(0.03) benign(0.209) TCGA-DM-A28H-01 11 133790113 133790113 C T IGSF9B Silent p.R1169R 0.32 TCGA-DM-A28H-01 11 20065583 20065583 T C NAV2 Silent p.D1011D 0.10 TCGA-DM-A28H-01 11 44286355 44286355 G T ALX4 3'UTR 0.38 TCGA-DM-A28H-01 11 56230205 56230205 G A OR5M9 Missense_Mutation p.R225C 0.55 deleterious(0.03) benign(0.103) TCGA-DM-A28H-01 11 63488327 63488327 T A RTN3 Missense_Mutation p.W785R 0.35 tolerated(0.16) benign(0.015) TCGA-DM-A28H-01 11 66359134 66359134 T C CCDC87 Silent p.R451R 0.10 TCGA-DM-A28H-01 11 76370797 76370797 G A LRRC32 Missense_Mutation p.R614C 0.38 deleterious(0) possibly_damaging(0.794) TCGA-DM-A28H-01 11 99715884 99715884 C G CNTN5 Missense_Mutation p.T156S 0.25 tolerated(0.85) benign(0.005) TCGA-DM-A28H-01 12 107372081 107372081 C G MTERFD3 Missense_Mutation p.E138Q 0.27 tolerated(0.09) possibly_damaging(0.785) TCGA-DM-A28H-01 12 110028577 110028577 T C MVK Missense_Mutation p.S227P 0.10 tolerated(0.51) benign(0) TCGA-DM-A28H-01 12 11061198 11061198 C A TAS2R13 Missense_Mutation p.V234L 0.42 tolerated(0.06) possibly_damaging(0.479) TCGA-DM-A28H-01 12 111749963 111749964 - T CUX2 Frame_Shift_Ins p.L655Sfs*49 0.27 TCGA-DM-A28H-01 12 113905104 113905104 G A LHX5 Silent p.D266D 0.36 TCGA-DM-A28H-01 12 118463633 118463633 G A RFC5 Silent p.Q221Q 0.25 TCGA-DM-A28H-01 12 52771874 52771874 G A KRT84 Missense_Mutation p.R583C 0.39 deleterious(0) unknown(0) TCGA-DM-A28H-01 12 55886935 55886935 C G OR6C68 Missense_Mutation p.I258M 0.38 tolerated_low_confidence(0.16) benign(0.251) TCGA-DM-A28H-01 12 69991051 69991051 C T CCT2 Silent p.A366A 0.35 TCGA-DM-A28H-01 12 80943433 80943433 A - PTPRQ Frame_Shift_Del p.Y1398Lfs*5 0.23 TCGA-DM-A28H-01 12 88586517 88586517 G A TMTC3 Missense_Mutation p.E615K 0.32 tolerated(0.1) benign(0.183) TCGA-DM-A28H-01 13 108883968 108883968 T G ABHD13 3'UTR 0.40 TCGA-DM-A28H-01 13 27690719 27690720 - GG USP12 Frame_Shift_Ins p.A22Rfs*3 0.54 TCGA-DM-A28H-01 13 61986231 61986231 G A PCDH20 Silent p.D667D 0.79 TCGA-DM-A28H-01 13 77644799 77644799 G T MYCBP2 Missense_Mutation p.F3919L 0.75 probably_damaging(0.937) TCGA-DM-A28H-01 14 29237214 29237214 G A FOXG1 Silent p.P243P 0.26 TCGA-DM-A28H-01 14 30047495 30047495 G T PRKD1 Missense_Mutation p.H836N 0.38 deleterious(0) probably_damaging(0.999) TCGA-DM-A28H-01 14 73989639 73989639 A G HEATR4 Missense_Mutation p.F73S 0.11 deleterious(0) probably_damaging(0.999) TCGA-DM-A28H-01 14 86087993 86087993 C A FLRT2 Missense_Mutation p.N45K 0.36 tolerated(0.09) benign(0.247) TCGA-DM-A28H-01 15 24922209 24922209 C T NPAP1 Missense_Mutation p.P399S 0.23 tolerated(0.28) benign(0.206) TCGA-DM-A28H-01 15 41687184 41687184 C T NDUFAF1 Missense_Mutation p.R211H 0.25 deleterious(0) probably_damaging(1) TCGA-DM-A28H-01 15 52667532 52667532 C T MYO5A Missense_Mutation p.R849Q 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-DM-A28H-01 15 62299653 62299653 G T VPS13C Missense_Mutation p.L382I 0.35 deleterious(0) possibly_damaging(0.715) TCGA-DM-A28H-01 15 93588737 93588737 C T RGMA Missense_Mutation p.V290M 0.21 deleterious(0.01) probably_damaging(0.961) TCGA-DM-A28H-01 16 2474588 2474588 G C CCNF 5'Flank 0.31 TCGA-DM-A28H-01 16 47549441 47549441 G A PHKB Missense_Mutation p.V175M 0.36 deleterious(0) possibly_damaging(0.836) TCGA-DM-A28H-01 16 53243427 53243427 A T CHD9 Missense_Mutation p.T496S 0.28 benign(0.022) TCGA-DM-A28H-01 16 69458582 69458582 G A CYB5B 5'UTR 0.36 TCGA-DM-A28H-01 16 76509917 76509917 T A CNTNAP4 Silent p.G506G 0.33 TCGA-DM-A28H-01 16 87730198 87730198 A C JPH3 Missense_Mutation p.I727L 0.23 tolerated(0.07) benign(0.004) TCGA-DM-A28H-01 17 2323691 2323691 T A METTL16 Missense_Mutation p.E421V 0.29 deleterious_low_confidence(0.02) benign(0.017) TCGA-DM-A28H-01 17 29852165 29852167 GGA - RAB11FIP4 In_Frame_Del p.E400del 0.26 TCGA-DM-A28H-01 17 39521219 39521219 G A KRT33B Silent p.S303S 0.12 TCGA-DM-A28H-01 17 56569890 56569890 T A MTMR4 Missense_Mutation p.K1131I 0.63 deleterious(0.04) probably_damaging(1) TCGA-DM-A28H-01 17 57289069 57289069 G A SMG8 Missense_Mutation p.E553K 0.13 tolerated(0.11) possibly_damaging(0.457) TCGA-DM-A28H-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.78 tolerated(0.11) benign(0.308) TCGA-DM-A28H-01 17 80332524 80332524 G A UTS2R Silent p.V108V 0.64 TCGA-DM-A28H-01 18 43307267 43307267 G A SLC14A1 Missense_Mutation p.G11S 0.46 deleterious_low_confidence(0.04) benign(0.104) TCGA-DM-A28H-01 18 48604787 48604787 G C SMAD4 Missense_Mutation p.D537H 0.34 deleterious(0) probably_damaging(1) TCGA-DM-A28H-01 18 64172496 64172496 C A CDH19 Missense_Mutation p.Q624H 0.56 tolerated(0.06) possibly_damaging(0.812) TCGA-DM-A28H-01 19 31768285 31768285 G A TSHZ3 Missense_Mutation p.S805L 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-DM-A28H-01 19 31768401 31768401 C T TSHZ3 Silent p.P766P 0.46 TCGA-DM-A28H-01 19 41223820 41223820 A G ITPKC Silent p.K260K 0.10 TCGA-DM-A28H-01 19 49132111 49132111 G A SPHK2 Missense_Mutation p.R349H 0.35 deleterious(0) probably_damaging(0.931) TCGA-DM-A28H-01 19 50302742 50302742 A G AP2A1 Missense_Mutation p.N375S 0.12 tolerated(0.76) benign(0.031) TCGA-DM-A28H-01 19 52132298 52132298 G A SIGLEC5 Silent p.N244N 0.40 TCGA-DM-A28H-01 19 53270158 53270158 T G ZNF600 Missense_Mutation p.N284T 0.53 tolerated(0.33) benign(0.098) TCGA-DM-A28H-01 19 53886927 53886927 C G ZNF525 3'UTR 0.43 TCGA-DM-A28H-01 19 54140003 54140003 G A DPRX Missense_Mutation p.A113T 0.37 tolerated(0.49) benign(0.002) TCGA-DM-A28H-01 1 101704963 101704963 G T S1PR1 Missense_Mutation p.E141D 0.39 deleterious(0) probably_damaging(0.962) TCGA-DM-A28H-01 1 103347319 103347319 T C COL11A1 Silent p.V1658V 0.33 TCGA-DM-A28H-01 1 110300609 110300610 - T EPS8L3 Frame_Shift_Ins p.S265Qfs*23 0.32 TCGA-DM-A28H-01 1 117142930 117142930 C T IGSF3 Silent p.P574P 0.40 TCGA-DM-A28H-01 1 12776140 12776140 C T AADACL3 5'Flank 0.59 TCGA-DM-A28H-01 1 142804589 142804589 A G RP11-423O2.5 RNA 0.31 TCGA-DM-A28H-01 1 152944928 152944928 C A SPRR4 3'UTR 0.36 TCGA-DM-A28H-01 1 153914710 153914710 C T DENND4B Missense_Mutation p.V255M 0.40 deleterious(0.02) benign(0.4) TCGA-DM-A28H-01 1 154171892 154171892 T G C1orf189 3'UTR 0.42 TCGA-DM-A28H-01 1 16271538 16271538 G C ZBTB17 Missense_Mutation p.T274R 0.25 tolerated(0.09) probably_damaging(0.979) TCGA-DM-A28H-01 1 16580190 16580191 - CACTG FBXO42 Frame_Shift_Ins p.W268Cfs*26 0.36 TCGA-DM-A28H-01 1 204937427 204937427 G A NFASC Missense_Mutation p.A253T 0.34 tolerated(0.6) benign(0.273) TCGA-DM-A28H-01 1 206822151 206822151 G A DYRK3 Silent p.V536V 0.32 TCGA-DM-A28H-01 1 211751926 211751926 C A SLC30A1 Missense_Mutation p.R10L 0.50 deleterious(0) probably_damaging(0.989) TCGA-DM-A28H-01 1 242277310 242277312 AAA TT PLD5 Nonsense_Mutation p.F317* 0.42 TCGA-DM-A28H-01 1 25628038 25628038 C G RHD Missense_Mutation p.P221R 0.75 deleterious(0) probably_damaging(0.998) TCGA-DM-A28H-01 1 35261081 35261081 G T GJA4 3'UTR 0.58 TCGA-DM-A28H-01 1 57169734 57169734 G T PRKAA2 Silent p.V293V 0.53 TCGA-DM-A28H-01 1 86896595 86896595 G A CLCA2 Missense_Mutation p.E176K 0.54 deleterious(0) probably_damaging(1) TCGA-DM-A28H-01 1 91404653 91404653 G C ZNF644 Nonsense_Mutation p.S753* 0.29 TCGA-DM-A28H-01 20 24939567 24939567 G A CST7 Missense_Mutation p.V83M 0.52 deleterious(0) probably_damaging(0.999) TCGA-DM-A28H-01 20 24949719 24949720 CT - APMAP Frame_Shift_Del p.R283Sfs*12 0.20 TCGA-DM-A28H-01 20 31948039 31948039 T C CDK5RAP1 Intron 0.10 TCGA-DM-A28H-01 20 34618541 34618541 C T CNBD2 Missense_Mutation p.R564W 0.32 deleterious(0) probably_damaging(0.997) TCGA-DM-A28H-01 20 35399598 35399598 T C DSN1 Splice_Site p.X12_splice 0.09 TCGA-DM-A28H-01 20 44521414 44521414 G A CTSA Silent p.P183P 0.59 TCGA-DM-A28H-01 20 44574700 44574701 CT - PCIF1 Frame_Shift_Del p.S459Cfs*3 0.23 TCGA-DM-A28H-01 20 55027440 55027440 C G CASS4 Missense_Mutation p.S403C 0.49 tolerated(0.06) benign(0.046) TCGA-DM-A28H-01 21 31798087 31798087 C A KRTAP13-3 Silent p.L48L 0.54 TCGA-DM-A28H-01 21 40572234 40572234 G A BRWD1 Missense_Mutation p.S1555F 0.46 tolerated(0.13) benign(0.08) TCGA-DM-A28H-01 21 48056890 48056890 A C PRMT2 Missense_Mutation p.R9S 0.35 tolerated_low_confidence(0.95) benign(0) TCGA-DM-A28H-01 22 26423121 26423121 C T MYO18B Missense_Mutation p.A2394V 0.11 tolerated(0.41) benign(0.152) TCGA-DM-A28H-01 22 30812043 30812043 A G SEC14L2 Missense_Mutation p.E293G 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-DM-A28H-01 22 50656658 50656658 G A TUBGCP6 Nonsense_Mutation p.Q1710* 0.09 TCGA-DM-A28H-01 2 100203731 100203731 C T AFF3 Missense_Mutation p.E851K 0.31 tolerated(0.14) benign(0.027) TCGA-DM-A28H-01 2 113993007 113993007 C T PAX8 Missense_Mutation p.V351M 0.39 tolerated(0.09) benign(0.059) TCGA-DM-A28H-01 2 141643785 141643785 G C LRP1B Missense_Mutation p.H1296D 0.49 benign(0.227) TCGA-DM-A28H-01 2 169824944 169824944 T A ABCB11 Missense_Mutation p.S690C 0.40 deleterious(0.01) possibly_damaging(0.806) TCGA-DM-A28H-01 2 170068594 170068594 T A LRP2 Missense_Mutation p.N2055I 0.32 possibly_damaging(0.463) TCGA-DM-A28H-01 2 209216086 209216086 T C PIKFYVE Silent p.F1874F 0.38 TCGA-DM-A28H-01 2 210818853 210818853 T G UNC80 Nonsense_Mutation p.L2373* 0.33 TCGA-DM-A28H-01 2 217002902 217002902 G A XRCC5 Missense_Mutation p.E448K 0.38 deleterious(0.02) possibly_damaging(0.551) TCGA-DM-A28H-01 2 223497945 223497945 C T FARSB Missense_Mutation p.V230I 0.38 tolerated(0.06) benign(0.054) TCGA-DM-A28H-01 2 55176033 55176033 G A EML6 Missense_Mutation p.R1340Q 0.50 deleterious(0.01) benign(0.407) TCGA-DM-A28H-01 2 73717610 73717610 C T ALMS1 Missense_Mutation p.H2841Y 0.29 probably_damaging(0.931) TCGA-DM-A28H-01 2 74452042 74452042 G C SLC4A5 Silent p.L1073L 0.43 TCGA-DM-A28H-01 2 86274384 86274384 T C POLR1A Silent p.A879A 0.26 TCGA-DM-A28H-01 2 97463300 97463300 T C CNNM4 Missense_Mutation p.S533P 0.09 deleterious(0) probably_damaging(0.979) TCGA-DM-A28H-01 3 100277358 100277358 C T TMEM45A Silent p.F171F 0.35 TCGA-DM-A28H-01 3 119886770 119886770 G A GPR156 Silent p.G518G 0.48 TCGA-DM-A28H-01 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.42 deleterious(0.01) benign(0.226) TCGA-DM-A28H-01 3 185997726 185997726 G A DGKG Missense_Mutation p.R236W 0.44 deleterious(0.01) possibly_damaging(0.582) TCGA-DM-A28H-01 3 195511118 195511118 G C MUC4 Missense_Mutation p.H2445D 0.15 unknown(0) TCGA-DM-A28H-01 3 43381975 43381975 C T SNRK Nonsense_Mutation p.R310* 0.49 TCGA-DM-A28H-01 3 52777434 52777434 T C NEK4 Silent p.G646G 0.40 TCGA-DM-A28H-01 3 52777435 52777435 C A NEK4 Missense_Mutation p.G646V 0.40 tolerated(0.12) benign(0.022) TCGA-DM-A28H-01 3 86115912 86115913 - A CADM2 Frame_Shift_Ins p.E434Rfs*? 0.24 TCGA-DM-A28H-01 3 9970273 9970273 G A IL17RC Missense_Mutation p.E428K 0.43 tolerated(0.08) benign(0.009) TCGA-DM-A28H-01 4 1067399 1067399 C T RNF212 Missense_Mutation p.D188N 0.10 tolerated(0.08) possibly_damaging(0.615) TCGA-DM-A28H-01 4 175897856 175897856 A C ADAM29 Missense_Mutation p.I394L 0.37 deleterious(0.04) benign(0.013) TCGA-DM-A28H-01 4 3129020 3129020 C T HTT Silent p.L478L 0.32 TCGA-DM-A28H-01 4 38776383 38776383 G C TLR10 Missense_Mutation p.R277G 0.40 tolerated(0.32) benign(0.063) TCGA-DM-A28H-01 4 39448794 39448794 C T KLB Silent p.G816G 0.48 TCGA-DM-A28H-01 4 40351169 40351169 G A CHRNA9 Silent p.K212K 0.32 TCGA-DM-A28H-01 4 44176853 44176853 C T KCTD8 Missense_Mutation p.R459H 0.36 deleterious(0) benign(0.382) TCGA-DM-A28H-01 4 44637940 44637940 T G YIPF7 Missense_Mutation p.E117D 0.42 deleterious(0.04) probably_damaging(0.982) TCGA-DM-A28H-01 4 68780304 68780304 A T TMPRSS11A Splice_Site p.X368_splice 0.38 TCGA-DM-A28H-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.48 TCGA-DM-A28H-01 5 140516326 140516326 C T PCDHB5 Missense_Mutation p.T437M 0.31 deleterious_low_confidence(0.01) benign(0.319) TCGA-DM-A28H-01 5 140588392 140588392 T G PCDHB12 5'UTR 0.35 TCGA-DM-A28H-01 5 140588663 140588663 C T PCDHB12 Missense_Mutation p.R62W 0.39 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-DM-A28H-01 5 140764120 140764120 G A PCDHGA7 Missense_Mutation p.V552M 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-DM-A28H-01 5 151692 151692 C T PLEKHG4B Missense_Mutation p.P301L 0.39 tolerated(0.51) benign(0.261) TCGA-DM-A28H-01 5 167674185 167674185 G A TENM2 Missense_Mutation p.E2081K 0.33 tolerated(0.11) probably_damaging(0.998) TCGA-DM-A28H-01 5 180630540 180630540 C T TRIM7 Intron 0.12 TCGA-DM-A28H-01 5 205864 205864 G A CCDC127 Missense_Mutation p.R111C 0.39 deleterious(0) probably_damaging(0.93) TCGA-DM-A28H-01 5 32135756 32135756 G C GOLPH3 Missense_Mutation p.L132V 0.21 deleterious(0.02) benign(0.073) TCGA-DM-A28H-01 5 5303430 5303430 G A ADAMTS16 Missense_Mutation p.A947T 0.35 tolerated(0.75) benign(0.004) TCGA-DM-A28H-01 5 90079731 90079731 A G GPR98 Missense_Mutation p.R4504G 0.31 benign(0.175) TCGA-DM-A28H-01 6 112535222 112535222 A G LAMA4 Intron 0.11 TCGA-DM-A28H-01 6 133013416 133013416 G A VNN1 Silent p.Y378Y 0.60 TCGA-DM-A28H-01 6 146350751 146350751 C T GRM1 Missense_Mutation p.S33L 0.79 deleterious(0.02) benign(0.158) TCGA-DM-A28H-01 6 151687861 151687861 C T ZBTB2 Missense_Mutation p.A114T 0.39 tolerated(0.11) probably_damaging(0.996) TCGA-DM-A28H-01 6 160482862 160482862 G A IGF2R Missense_Mutation p.A1162T 0.27 deleterious(0.04) benign(0.192) TCGA-DM-A28H-01 6 165746495 165746495 G A PDE10A 3'UTR 0.58 TCGA-DM-A28H-01 6 33168616 33168616 C T SLC39A7 5'Flank 0.24 TCGA-DM-A28H-01 6 34309662 34309662 C T NUDT3 Missense_Mutation p.A63T 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-DM-A28H-01 7 103159930 103159930 T G RELN Missense_Mutation p.N2568H 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A28H-01 7 74005247 74005247 A G GTF2IRD1 Missense_Mutation p.D863G 0.52 tolerated(0.24) benign(0.044) TCGA-DM-A28H-01 7 99313528 99313528 C T CYP3A7 Missense_Mutation p.V175I 0.32 tolerated(1) benign(0.002) TCGA-DM-A28H-01 8 113316954 113316954 G A CSMD3 Silent p.C2754C 0.16 TCGA-DM-A28H-01 8 139165303 139165303 G C FAM135B Missense_Mutation p.S472C 0.51 tolerated(0.11) benign(0.004) TCGA-DM-A28H-01 8 145770826 145770826 G A ARHGAP39 Silent p.S776S 0.33 TCGA-DM-A28H-01 8 55014422 55014422 G A LYPLA1 5'UTR 0.12 TCGA-DM-A28H-01 8 59512379 59512379 C T NSMAF Silent p.L492L 0.15 TCGA-DM-A28H-01 8 62538776 62538776 G C ASPH Intron 0.25 TCGA-DM-A28H-01 8 68211488 68211488 G A ARFGEF1 Nonsense_Mutation p.Q139* 0.66 TCGA-DM-A28H-01 9 107266574 107266574 G T OR13F1 Missense_Mutation p.V11L 0.39 tolerated(0.08) benign(0.005) TCGA-DM-A28H-01 9 118950060 118950060 G A PAPPA Missense_Mutation p.R348H 0.40 deleterious(0) possibly_damaging(0.848) TCGA-DM-A28H-01 9 119488228 119488228 G T ASTN2 Silent p.G825G 0.41 TCGA-DM-A28H-01 9 131708912 131708912 T C DOLK Missense_Mutation p.D224G 0.42 tolerated(0.41) benign(0.441) TCGA-DM-A28H-01 9 139345814 139345814 T C SEC16A Missense_Mutation p.D2069G 0.34 tolerated(0.23) benign(0.01) TCGA-DM-A28H-01 9 21187003 21187003 C T IFNA4 Silent p.S176S 0.34 TCGA-DM-A28H-01 9 38611291 38611291 T G ANKRD18A Missense_Mutation p.I175L 0.32 tolerated(0.28) benign(0.314) TCGA-DM-A28H-01 9 88655660 88655661 TC - GOLM1 Frame_Shift_Del p.R197Tfs*8 0.25 TCGA-DM-A28H-01 9 91618511 91618511 C T S1PR3 3'UTR 0.37 TCGA-DM-A28H-01 X 102192245 102192245 C T RAB40AL 5'UTR 0.40 TCGA-DM-A28H-01 X 147743811 147743811 A G AFF2 Missense_Mutation p.Q188R 0.38 tolerated(0.73) probably_damaging(0.968) TCGA-DM-A28H-01 X 41555833 41555833 C T GPR34 Missense_Mutation p.S316L 0.36 deleterious(0) probably_damaging(0.991) TCGA-DM-A28H-01 X 63412835 63412836 - TGTG AMER1 Frame_Shift_Ins p.S111Tfs*3 0.79 TCGA-DM-A28H-01 X 74698737 74698737 G C ZDHHC15 Missense_Mutation p.P83A 0.81 tolerated(0.22) possibly_damaging(0.612) TCGA-DM-A28K-01 10 104816672 104816672 A C CNNM2 Missense_Mutation p.Y675S 0.09 deleterious(0.02) possibly_damaging(0.883) TCGA-DM-A28K-01 10 131639151 131639151 C T EBF3 Silent p.S497S 0.38 TCGA-DM-A28K-01 10 46322306 46322306 T A AGAP4 Missense_Mutation p.D350V 0.40 deleterious(0.02) possibly_damaging(0.9) TCGA-DM-A28K-01 10 50916667 50916667 C T C10orf53 3'UTR 0.32 TCGA-DM-A28K-01 10 5948356 5948356 C T FBXO18 Missense_Mutation p.R223W 0.35 tolerated(0.11) benign(0.002) TCGA-DM-A28K-01 10 71332399 71332399 G A NEUROG3 Missense_Mutation p.A134V 0.40 deleterious(0.01) possibly_damaging(0.88) TCGA-DM-A28K-01 10 88679081 88679081 G C BMPR1A Missense_Mutation p.G341R 0.39 deleterious(0) probably_damaging(1) TCGA-DM-A28K-01 10 99133604 99133604 C T RRP12 Missense_Mutation p.D616N 0.45 tolerated(0.09) benign(0.052) TCGA-DM-A28K-01 11 1018032 1018032 G A MUC6 Missense_Mutation p.P1590L 0.26 unknown(0) TCGA-DM-A28K-01 11 108236087 108236087 G A ATM Missense_Mutation p.R3008H 0.44 deleterious(0) probably_damaging(0.97) TCGA-DM-A28K-01 11 118498936 118498936 G A PHLDB1 Missense_Mutation p.R466Q 0.44 tolerated(0.08) probably_damaging(0.998) TCGA-DM-A28K-01 11 124615466 124615466 C A NRGN Missense_Mutation p.A28E 0.32 tolerated(0.15) unknown(0) TCGA-DM-A28K-01 11 18566344 18566344 C G UEVLD Splice_Site p.X296_splice 0.41 TCGA-DM-A28K-01 11 22301255 22301255 G A ANO5 Missense_Mutation p.A896T 0.46 tolerated(0.37) benign(0.002) TCGA-DM-A28K-01 11 31824263 31824263 G A PAX6 Nonsense_Mutation p.R44* 0.52 TCGA-DM-A28K-01 11 403707 403707 G A PKP3 Silent p.Q671Q 0.33 TCGA-DM-A28K-01 11 5254298 5254298 C T HBD Missense_Mutation p.V114M 0.46 deleterious(0.01) benign(0.303) TCGA-DM-A28K-01 11 55659031 55659031 A C TRIM51 Missense_Mutation p.S428R 0.23 tolerated(0.08) benign(0.257) TCGA-DM-A28K-01 11 58170716 58170716 G T OR5B3 Missense_Mutation p.P56H 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DM-A28K-01 11 59597017 59597017 C A GIF Silent p.G398G 0.37 TCGA-DM-A28K-01 11 62371614 62371614 T C EML3 Missense_Mutation p.E681G 0.10 deleterious(0) probably_damaging(0.999) TCGA-DM-A28K-01 11 65340994 65340994 C T FAM89B Missense_Mutation p.S151F 0.31 tolerated(0.1) probably_damaging(0.989) TCGA-DM-A28K-01 11 6662532 6662532 G A DCHS1 Missense_Mutation p.R105C 0.46 deleterious(0) possibly_damaging(0.768) TCGA-DM-A28K-01 11 73022529 73022529 G A ARHGEF17 Missense_Mutation p.R949Q 0.39 tolerated_low_confidence(0.34) benign(0.001) TCGA-DM-A28K-01 11 7847194 7847194 G A OR5P3 Missense_Mutation p.T109M 0.43 deleterious(0.01) benign(0.376) TCGA-DM-A28K-01 12 101473017 101473017 T A ANO4 Silent p.A418A 0.39 TCGA-DM-A28K-01 12 104126875 104126875 C A STAB2 Missense_Mutation p.A1792D 0.37 tolerated(0.09) benign(0.057) TCGA-DM-A28K-01 12 120878362 120878362 G T COX6A1 3'UTR 0.38 TCGA-DM-A28K-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.41 deleterious(0) benign(0.361) TCGA-DM-A28K-01 12 53045563 53045563 G A KRT2 Missense_Mutation p.R122C 0.49 tolerated(0.17) unknown(0) TCGA-DM-A28K-01 12 55945194 55945194 C T OR6C4 Missense_Mutation p.R62W 0.46 deleterious_low_confidence(0.03) benign(0.002) TCGA-DM-A28K-01 12 56814388 56814388 G A TIMELESS Missense_Mutation p.R1065C 0.40 tolerated(0.07) possibly_damaging(0.849) TCGA-DM-A28K-01 12 68550 68550 C T RP11-598F7.1 RNA 0.10 TCGA-DM-A28K-01 13 111372025 111372025 C T ING1 Nonsense_Mutation p.R339* 0.88 TCGA-DM-A28K-01 13 36413287 36413287 C T DCLK1 Silent p.T354T 0.41 TCGA-DM-A28K-01 13 39425848 39425848 C T FREM2 Silent p.T2256T 0.48 TCGA-DM-A28K-01 13 51855368 51855368 C T FAM124A Silent p.N575N 0.53 TCGA-DM-A28K-01 13 96282344 96282344 C T DZIP1 Missense_Mutation p.E237K 0.35 deleterious(0.01) benign(0.076) TCGA-DM-A28K-01 14 100380541 100380541 G A EML1 Missense_Mutation p.R526Q 0.35 deleterious(0.01) probably_damaging(0.939) TCGA-DM-A28K-01 14 106320735 106320735 C T IGHM Missense_Mutation p.A359T 0.50 deleterious(0.02) possibly_damaging(0.5) TCGA-DM-A28K-01 14 20483291 20483291 C T OR4K14 Missense_Mutation p.R21Q 0.33 tolerated(0.76) benign(0.002) TCGA-DM-A28K-01 14 31597028 31597028 C A HECTD1 Missense_Mutation p.E1648D 0.47 tolerated(0.82) possibly_damaging(0.899) TCGA-DM-A28K-01 14 51561036 51561036 G C TRIM9 Missense_Mutation p.R208G 0.41 tolerated(0.07) benign(0.155) TCGA-DM-A28K-01 14 72205812 72205812 C T SIPA1L1 Silent p.S1783S 0.41 TCGA-DM-A28K-01 14 77492279 77492279 G A IRF2BPL Silent p.N619N 0.49 TCGA-DM-A28K-01 15 41105042 41105042 A G ZFYVE19 Silent p.E324E 0.30 TCGA-DM-A28K-01 15 51749621 51749621 A G DMXL2 Silent p.Y2726Y 0.36 TCGA-DM-A28K-01 15 79092757 79092757 G A ADAMTS7 Missense_Mutation p.A78V 0.56 tolerated(0.53) benign(0.009) TCGA-DM-A28K-01 15 79749150 79749150 G A KIAA1024 Missense_Mutation p.E221K 0.48 deleterious(0.01) benign(0.443) TCGA-DM-A28K-01 15 90346484 90346484 C T ANPEP Missense_Mutation p.D519N 0.49 tolerated(0.35) benign(0.002) TCGA-DM-A28K-01 16 23197646 23197646 G A SCNN1G Silent p.T18T 0.54 TCGA-DM-A28K-01 16 2326692 2326692 C T ABCA3 Missense_Mutation p.A1700T 0.47 tolerated(0.43) benign(0) TCGA-DM-A28K-01 16 49764711 49764711 G A ZNF423 Missense_Mutation p.T83M 0.47 tolerated(0.45) probably_damaging(0.939) TCGA-DM-A28K-01 16 57684205 57684205 T C GPR56 Silent p.T2T 0.10 TCGA-DM-A28K-01 16 67916970 67916970 C T EDC4 Missense_Mutation p.R1247C 0.59 deleterious(0) probably_damaging(0.997) TCGA-DM-A28K-01 16 716059 716059 C T WDR90 Missense_Mutation p.T1515M 0.50 deleterious(0.04) probably_damaging(0.984) TCGA-DM-A28K-01 16 74524900 74524900 G A GLG1 Missense_Mutation p.A483V 0.44 deleterious(0) possibly_damaging(0.847) TCGA-DM-A28K-01 16 87970091 87970091 G T CA5A 5'UTR 0.12 TCGA-DM-A28K-01 16 89764171 89764172 AG T SPATA2L Frame_Shift_Del p.A282Efs*35 0.10 TCGA-DM-A28K-01 17 10537389 10537389 G A MYH3 Silent p.Y1489Y 0.39 TCGA-DM-A28K-01 17 18074951 18074951 G A MYO15A Splice_Site p.X3361_splice 0.43 TCGA-DM-A28K-01 17 19459114 19459114 T C SLC47A1 Missense_Mutation p.S249P 0.14 deleterious(0) probably_damaging(0.974) TCGA-DM-A28K-01 17 37815729 37815729 C T STARD3 Missense_Mutation p.R240C 0.33 deleterious(0.03) benign(0.037) TCGA-DM-A28K-01 17 40042447 40042447 C T ACLY Missense_Mutation p.G664R 0.49 deleterious(0) probably_damaging(1) TCGA-DM-A28K-01 17 40094864 40094864 C T TTC25 RNA 0.44 TCGA-DM-A28K-01 17 42852647 42852647 G T ADAM11 Missense_Mutation p.G430C 0.39 deleterious(0) probably_damaging(1) TCGA-DM-A28K-01 17 73774600 73774600 C T H3F3B 3'UTR 0.17 TCGA-DM-A28K-01 18 48584513 48584514 - G SMAD4 Frame_Shift_Ins p.S232Qfs*3 0.40 TCGA-DM-A28K-01 19 12222917 12222917 T G ZNF788 Nonsense_Mutation p.Y185* 0.25 TCGA-DM-A28K-01 19 36279346 36279346 G A ARHGAP33 3'UTR 0.62 TCGA-DM-A28K-01 19 43376068 43376068 A T PSG1 Missense_Mutation p.L187H 0.48 deleterious(0) probably_damaging(1) TCGA-DM-A28K-01 19 51870763 51870763 G A CLDND2 Silent p.F126F 0.33 TCGA-DM-A28K-01 19 53384285 53384285 G A ZNF320 Missense_Mutation p.A365V 0.32 tolerated(0.74) benign(0.326) TCGA-DM-A28K-01 19 56002275 56002276 - G SSC5D Frame_Shift_Ins p.A244Gfs*45 0.32 TCGA-DM-A28K-01 19 57646726 57646726 T C ZIM3 Missense_Mutation p.R327G 0.49 deleterious(0) probably_damaging(0.998) TCGA-DM-A28K-01 19 58565136 58565136 G A ZSCAN1 Missense_Mutation p.R315H 0.25 tolerated(0.17) possibly_damaging(0.651) TCGA-DM-A28K-01 1 117658238 117658238 C T TRIM45 Missense_Mutation p.V476I 0.37 tolerated(0.27) benign(0.001) TCGA-DM-A28K-01 1 152648629 152648629 T C LCE2C Silent p.S46S 0.58 TCGA-DM-A28K-01 1 155168351 155168351 C T THBS3 Silent p.Q641Q 0.28 TCGA-DM-A28K-01 1 201027606 201027606 T C CACNA1S Missense_Mutation p.D1180G 0.26 deleterious(0) probably_damaging(0.996) TCGA-DM-A28K-01 1 201190752 201190752 C G IGFN1 Missense_Mutation p.T3360S 0.25 benign(0.396) TCGA-DM-A28K-01 1 213032009 213032009 C T FLVCR1 Missense_Mutation p.A72V 0.24 tolerated(0.57) benign(0.002) TCGA-DM-A28K-01 1 248436751 248436751 C T OR2T33 Silent p.A122A 0.21 TCGA-DM-A28K-01 1 33760820 33760820 G A ZNF362 Missense_Mutation p.A354T 0.41 tolerated(0.13) possibly_damaging(0.842) TCGA-DM-A28K-01 1 34046390 34046390 G A CSMD2 Silent p.H2452H 0.45 TCGA-DM-A28K-01 1 46976280 46976280 G A DMBX1 Missense_Mutation p.R96H 0.48 deleterious(0) probably_damaging(1) TCGA-DM-A28K-01 1 47138663 47138665 GGA - TEX38 In_Frame_Del p.E53del 0.20 TCGA-DM-A28K-01 1 6209103 6209103 G A CHD5 Silent p.D398D 0.46 TCGA-DM-A28K-01 21 34134477 34134477 G A PAXBP1 Silent p.D267D 0.28 TCGA-DM-A28K-01 21 40193623 40193623 G A ETS2 Missense_Mutation p.D397N 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-DM-A28K-01 22 45828264 45828264 C T RIBC2 3'UTR 0.16 TCGA-DM-A28K-01 2 102483019 102483019 C T MAP4K4 Silent p.S700S 0.47 TCGA-DM-A28K-01 2 130737696 130737696 C T RAB6C Missense_Mutation p.A3V 0.22 tolerated_low_confidence(0.13) benign(0.009) TCGA-DM-A28K-01 2 17998346 17998346 G A MSGN1 Silent p.E187E 0.34 TCGA-DM-A28K-01 2 201718148 201718148 C T CLK1 Missense_Mutation p.E488K 0.43 deleterious(0.04) benign(0.105) TCGA-DM-A28K-01 2 21245843 21245843 C T APOB Silent p.P892P 0.44 TCGA-DM-A28K-01 2 238486710 238486710 G A RAB17 Silent p.S82S 0.15 TCGA-DM-A28K-01 2 241724508 241724508 C T KIF1A Silent p.A206A 0.46 TCGA-DM-A28K-01 2 55549731 55549731 C T CCDC88A Missense_Mutation p.R1031Q 0.38 tolerated(0.41) benign(0.102) TCGA-DM-A28K-01 3 138351848 138351848 G A FAIM Missense_Mutation p.S190N 0.45 deleterious(0) probably_damaging(0.972) TCGA-DM-A28K-01 3 168845680 168845680 G A MECOM Missense_Mutation p.T137M 0.45 tolerated(0.14) benign(0.029) TCGA-DM-A28K-01 3 23932107 23932107 T C UBE2E1 3'UTR 0.46 TCGA-DM-A28K-01 3 48561153 48561153 G A PFKFB4 Silent p.Y401Y 0.36 TCGA-DM-A28K-01 3 56207505 56207505 G A ERC2 Missense_Mutation p.T373M 0.38 deleterious(0) possibly_damaging(0.796) TCGA-DM-A28K-01 3 62355884 62355884 C T FEZF2 Silent p.T418T 0.42 TCGA-DM-A28K-01 3 77530254 77530254 G A ROBO2 Missense_Mutation p.R200H 0.55 deleterious(0) possibly_damaging(0.526) TCGA-DM-A28K-01 4 110758686 110758686 C G RRH Silent p.S215S 0.46 TCGA-DM-A28K-01 4 122853636 122853636 G A TRPC3 Silent p.I259I 0.39 TCGA-DM-A28K-01 4 47589068 47589068 C T ATP10D Silent p.S1262S 0.43 TCGA-DM-A28K-01 4 69817371 69817371 C G UGT2A3 Missense_Mutation p.W36C 0.48 deleterious(0) probably_damaging(1) TCGA-DM-A28K-01 4 8284188 8284188 G A HTRA3 Missense_Mutation p.R137H 0.35 deleterious(0) probably_damaging(0.965) TCGA-DM-A28K-01 4 88537825 88537825 C T DSPP 3'UTR 0.47 TCGA-DM-A28K-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.41 TCGA-DM-A28K-01 5 140188676 140188676 G A PCDHA4 Missense_Mutation p.R635H 0.53 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DM-A28K-01 5 140558948 140558948 G A PCDHB8 Missense_Mutation p.V445I 0.22 tolerated_low_confidence(0.18) benign(0.007) TCGA-DM-A28K-01 5 140573214 140573214 G A PCDHB10 Silent p.T363T 0.09 TCGA-DM-A28K-01 5 140762826 140762826 C T PCDHGA7 Silent p.D120D 0.42 TCGA-DM-A28K-01 5 143586649 143586649 C T KCTD16 Silent p.P124P 0.36 TCGA-DM-A28K-01 5 1474674 1474674 C T LPCAT1 Splice_Site p.X342_splice 0.58 TCGA-DM-A28K-01 5 151784196 151784196 C T NMUR2 Missense_Mutation p.R160Q 0.58 tolerated(0.1) possibly_damaging(0.835) TCGA-DM-A28K-01 5 15928344 15928344 G A FBXL7 Missense_Mutation p.R158H 0.24 tolerated(0.05) possibly_damaging(0.772) TCGA-DM-A28K-01 5 176025206 176025206 C T GPRIN1 Missense_Mutation p.E544K 0.44 tolerated(0.1) benign(0.001) TCGA-DM-A28K-01 5 176314628 176314628 C T HK3 Missense_Mutation p.R475H 0.42 deleterious(0) probably_damaging(0.999) TCGA-DM-A28K-01 5 180687614 180687614 C G TRIM52 Missense_Mutation p.E67D 0.53 tolerated(0.18) benign(0.02) TCGA-DM-A28K-01 5 23526512 23526512 C T PRDM9 Nonsense_Mutation p.Q439* 0.28 TCGA-DM-A28K-01 5 37835890 37835890 G A GDNF 5'UTR 0.23 TCGA-DM-A28K-01 6 139583759 139583759 T C TXLNB Missense_Mutation p.E280G 0.45 deleterious(0.01) possibly_damaging(0.861) TCGA-DM-A28K-01 6 151673857 151673857 T G AKAP12 Missense_Mutation p.L1444W 0.83 deleterious(0) probably_damaging(0.988) TCGA-DM-A28K-01 6 29141337 29141337 G T OR2J2 5'UTR 0.27 TCGA-DM-A28K-01 6 29454889 29454889 G A MAS1L Missense_Mutation p.A264V 0.10 tolerated(1) benign(0.008) TCGA-DM-A28K-01 6 31777821 31777821 G T HSPA1L 3'UTR 0.44 TCGA-DM-A28K-01 6 35825091 35825091 G C SRPK1 Missense_Mutation p.L523V 0.48 deleterious(0) probably_damaging(0.995) TCGA-DM-A28K-01 6 36181948 36181948 G A BRPF3 Missense_Mutation p.R925H 0.43 deleterious(0.02) possibly_damaging(0.81) TCGA-DM-A28K-01 6 4891976 4891977 - A CDYL Frame_Shift_Ins p.G21Rfs*13 0.29 TCGA-DM-A28K-01 7 100684923 100684923 C T MUC17 Missense_Mutation p.T3409M 0.36 probably_damaging(0.985) TCGA-DM-A28K-01 7 123302909 123302909 T C LMOD2 Silent p.P423P 0.39 TCGA-DM-A28K-01 7 90042471 90042471 C A CLDN12 Missense_Mutation p.L161M 0.37 tolerated(0.37) benign(0.073) TCGA-DM-A28K-01 8 144358563 144358563 G A GLI4 Silent p.E240E 0.26 TCGA-DM-A28K-01 8 30694498 30694498 G A TEX15 Missense_Mutation p.A2718V 0.26 deleterious(0.01) possibly_damaging(0.552) TCGA-DM-A28K-01 8 63502289 63502289 C A NKAIN3 Missense_Mutation p.A70D 0.31 deleterious(0.01) probably_damaging(1) TCGA-DM-A28K-01 8 95877917 95877917 C T INTS8 Missense_Mutation p.R754W 0.57 deleterious(0) probably_damaging(0.957) TCGA-DM-A28K-01 9 125377263 125377263 C A OR1Q1 Missense_Mutation p.Q83K 0.31 tolerated(0.23) benign(0.014) TCGA-DM-A28K-01 9 35074072 35074072 G T FANCG 3'UTR 0.10 TCGA-DM-A28K-01 X 101395562 101395562 A T TCEAL6 3'UTR 0.81 TCGA-DM-A28K-01 X 108635280 108635280 C A GUCY2F Missense_Mutation p.D881Y 0.86 deleterious(0) probably_damaging(0.977) TCGA-DM-A28K-01 X 149638240 149638240 A G MAMLD1 Missense_Mutation p.E107G 0.90 deleterious(0.03) probably_damaging(0.976) TCGA-DM-A28K-01 X 153585914 153585914 G A FLNA Silent p.D1611D 0.85 TCGA-DM-A28K-01 X 1584471 1584471 G A P2RY8 Silent p.S327S 0.44 TCGA-DM-A28K-01 X 29301307 29301307 A G IL1RAPL1 Missense_Mutation p.D112G 0.08 deleterious(0) probably_damaging(0.989) TCGA-DM-A28K-01 X 63411691 63411715 CCTGCGGACAAGCCCCAGGGCCTCA - AMER1 Frame_Shift_Del p.E485Ifs*48 0.70 TCGA-DM-A28M-01 10 102114262 102114262 C T SCD Nonsense_Mutation p.R174* 0.45 TCGA-DM-A28M-01 10 104389853 104389853 G A SUFU Missense_Mutation p.E466K 0.45 deleterious(0.02) benign(0.129) TCGA-DM-A28M-01 10 3190244 3190244 G A PITRM1 Silent p.F669F 0.22 TCGA-DM-A28M-01 10 61112069 61112069 G A FAM13C Silent p.I95I 0.23 TCGA-DM-A28M-01 10 70333663 70333663 T C TET1 Missense_Mutation p.L523P 0.08 tolerated(0.06) benign(0.022) TCGA-DM-A28M-01 10 70928377 70928377 T C VPS26A Missense_Mutation p.F287S 0.25 deleterious(0) probably_damaging(0.978) TCGA-DM-A28M-01 10 7325890 7325890 T C SFMBT2 Missense_Mutation p.K250E 0.27 tolerated(0.59) benign(0.005) TCGA-DM-A28M-01 10 95111307 95111307 G A MYOF Nonsense_Mutation p.R1229* 0.51 TCGA-DM-A28M-01 10 95191259 95191259 G A MYOF Missense_Mutation p.A84V 0.31 tolerated(0.25) benign(0.236) TCGA-DM-A28M-01 11 126162499 126162499 G A TIRAP Silent p.T65T 0.57 TCGA-DM-A28M-01 11 33640168 33640168 G A KIAA1549L Missense_Mutation p.R1493Q 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-DM-A28M-01 11 57003529 57003529 C T APLNR Missense_Mutation p.R317H 0.30 deleterious(0) probably_damaging(0.999) TCGA-DM-A28M-01 11 64536741 64536741 G A SF1 Missense_Mutation p.R370W 0.47 deleterious(0.02) possibly_damaging(0.603) TCGA-DM-A28M-01 11 64855506 64855506 C T ZFPL1 Missense_Mutation p.R285C 0.51 deleterious(0.01) possibly_damaging(0.854) TCGA-DM-A28M-01 11 6638039 6638039 A G TPP1 Missense_Mutation p.F247L 0.11 deleterious(0.01) possibly_damaging(0.68) TCGA-DM-A28M-01 12 105150933 105150933 C T CHST11 Silent p.V137V 0.64 TCGA-DM-A28M-01 12 120106170 120106170 C T PRKAB1 Missense_Mutation p.P41S 0.63 tolerated(0.81) benign(0.004) TCGA-DM-A28M-01 12 128900008 128900008 G A TMEM132C Missense_Mutation p.G273S 0.25 tolerated(0.43) benign(0.002) TCGA-DM-A28M-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.71 deleterious(0) possibly_damaging(0.479) TCGA-DM-A28M-01 12 5708787 5708787 T C ANO2 Missense_Mutation p.K699R 0.21 deleterious(0.02) possibly_damaging(0.828) TCGA-DM-A28M-01 12 81732965 81732965 G C PPFIA2 Missense_Mutation p.Q848E 0.19 tolerated(0.13) benign(0.087) TCGA-DM-A28M-01 12 8906555 8906555 C T RIMKLB Missense_Mutation p.A188V 0.61 tolerated(0.65) benign(0.053) TCGA-DM-A28M-01 12 8926029 8926029 C T RIMKLB Silent p.D270D 0.62 TCGA-DM-A28M-01 13 32914783 32914783 G A BRCA2 Silent p.T2097T 0.32 TCGA-DM-A28M-01 13 84455890 84455890 A G SLITRK1 5'UTR 0.26 TCGA-DM-A28M-01 13 99515283 99515283 T C DOCK9 Missense_Mutation p.N1190S 0.11 tolerated(0.47) benign(0.205) TCGA-DM-A28M-01 13 99566580 99566580 A G DOCK9 Splice_Site p.X320_splice 0.21 TCGA-DM-A28M-01 14 105416464 105416464 G A AHNAK2 Missense_Mutation p.A1775V 0.20 benign(0.115) TCGA-DM-A28M-01 14 106111093 106111093 G A IGHG2 Missense_Mutation p.A12V 0.60 tolerated(0.1) benign(0.185) TCGA-DM-A28M-01 14 106386985 106386985 C T KIAA0125 Nonsense_Mutation p.R12* 0.22 TCGA-DM-A28M-01 14 24045020 24045020 C T JPH4 Missense_Mutation p.R342H 0.24 deleterious(0) possibly_damaging(0.564) TCGA-DM-A28M-01 15 43621672 43621672 C T LCMT2 Missense_Mutation p.G339E 1.00 deleterious(0.02) possibly_damaging(0.478) TCGA-DM-A28M-01 15 67457314 67457317 CCTG - SMAD3 Frame_Shift_Del p.L97Tfs*18 0.67 TCGA-DM-A28M-01 15 91454723 91454723 C T MAN2A2 Silent p.A684A 0.70 TCGA-DM-A28M-01 16 1265066 1265066 G A CACNA1H Missense_Mutation p.R1675Q 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-DM-A28M-01 16 3191313 3191313 A G ZNF213 Missense_Mutation p.S449G 0.17 tolerated(0.28) benign(0.001) TCGA-DM-A28M-01 16 84118683 84118683 G A MBTPS1 Silent p.G397G 0.60 TCGA-DM-A28M-01 17 17398909 17398909 A G RASD1 Missense_Mutation p.S126P 0.14 deleterious(0.03) possibly_damaging(0.904) TCGA-DM-A28M-01 17 18023083 18023083 G A MYO15A Silent p.S323S 0.41 TCGA-DM-A28M-01 17 36485406 36485406 G A GPR179 Missense_Mutation p.A1349V 0.43 tolerated(0.25) benign(0.003) TCGA-DM-A28M-01 17 38954563 38954563 A G KRT28 Missense_Mutation p.L205P 0.11 deleterious(0) benign(0.236) TCGA-DM-A28M-01 17 54872425 54872425 T C C17orf67 Silent p.%3D 0.08 TCGA-DM-A28M-01 17 56357292 56357292 G A MPO Missense_Mutation p.T111M 0.50 tolerated(0.06) benign(0.068) TCGA-DM-A28M-01 17 62084073 62084073 C T ICAM2 5'UTR 0.33 TCGA-DM-A28M-01 17 72346992 72346992 G A AC103809.2 Missense_Mutation p.R107W 0.35 possibly_damaging(0.833) TCGA-DM-A28M-01 17 73565095 73565095 G A LLGL2 Silent p.S453S 0.35 TCGA-DM-A28M-01 17 78063643 78063643 C T CCDC40 Missense_Mutation p.T931M 0.49 tolerated(0.14) benign(0.018) TCGA-DM-A28M-01 17 8135066 8135066 C T CTC1 Missense_Mutation p.R818Q 0.48 tolerated(0.08) probably_damaging(1) TCGA-DM-A28M-01 18 43495506 43495506 G A EPG5 Silent p.S1221S 0.76 TCGA-DM-A28M-01 18 45372166 45372166 C T SMAD2 Missense_Mutation p.G335R 0.77 deleterious(0.01) probably_damaging(0.979) TCGA-DM-A28M-01 19 34263838 34263838 G A CHST8 Missense_Mutation p.R382Q 0.59 deleterious(0) probably_damaging(0.998) TCGA-DM-A28M-01 19 38682875 38682875 A G SIPA1L3 Silent p.K1507K 0.23 TCGA-DM-A28M-01 19 49114084 49114084 G A FAM83E Silent p.D162D 0.22 TCGA-DM-A28M-01 19 53056503 53056503 A G ZNF808 Missense_Mutation p.N112D 0.16 tolerated(1) benign(0) TCGA-DM-A28M-01 19 53210063 53210063 G C ZNF611 Missense_Mutation p.T82R 0.10 tolerated(0.29) benign(0.006) TCGA-DM-A28M-01 19 53210103 53210103 A G ZNF611 Missense_Mutation p.C69R 0.08 tolerated(0.42) benign(0) TCGA-DM-A28M-01 19 8601427 8601427 T G MYO1F Missense_Mutation p.R618S 0.41 deleterious(0.02) possibly_damaging(0.872) TCGA-DM-A28M-01 19 9015710 9015710 A C MUC16 Missense_Mutation p.F12705V 0.21 benign(0.136) TCGA-DM-A28M-01 19 9057210 9057210 G A MUC16 Missense_Mutation p.T10079I 0.42 benign(0.092) TCGA-DM-A28M-01 1 10231236 10231236 T A UBE4B Missense_Mutation p.L1125H 0.62 deleterious(0) probably_damaging(1) TCGA-DM-A28M-01 1 1221422 1221424 CTT - SCNN1D In_Frame_Del p.F227del 0.41 TCGA-DM-A28M-01 1 155451615 155451615 C A ASH1L Missense_Mutation p.G349V 0.41 deleterious_low_confidence(0) possibly_damaging(0.609) TCGA-DM-A28M-01 1 167097045 167097045 A T DUSP27 Missense_Mutation p.I893L 0.44 tolerated(0.23) benign(0.007) TCGA-DM-A28M-01 1 172411802 172411802 C T PIGC 5'UTR 0.40 TCGA-DM-A28M-01 1 33237146 33237146 C T KIAA1522 Missense_Mutation p.P789L 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-DM-A28M-01 1 42880165 42880165 C T RIMKLA Silent p.G232G 0.60 TCGA-DM-A28M-01 1 46655211 46655211 C T POMGNT1 Missense_Mutation p.R605H 0.49 probably_damaging(1) TCGA-DM-A28M-01 1 47014910 47014910 C T KNCN Missense_Mutation p.A61T 0.44 tolerated_low_confidence(0.15) benign(0) TCGA-DM-A28M-01 1 6270962 6270962 G A RNF207 Silent p.T325T 0.77 TCGA-DM-A28M-01 20 23016580 23016580 G A SSTR4 Missense_Mutation p.A154T 0.71 deleterious(0.01) benign(0.176) TCGA-DM-A28M-01 20 37357272 37357272 C T SLC32A1 Missense_Mutation p.A523V 0.24 tolerated_low_confidence(0.73) benign(0) TCGA-DM-A28M-01 20 50408576 50408576 G A SALL4 Missense_Mutation p.A149V 0.08 tolerated(0.26) benign(0.054) TCGA-DM-A28M-01 20 51871073 51871073 G A TSHZ2 Missense_Mutation p.R359H 0.62 deleterious(0.01) probably_damaging(0.998) TCGA-DM-A28M-01 20 62227080 62227080 C T GMEB2 Missense_Mutation p.D168N 0.67 tolerated(0.06) benign(0.055) TCGA-DM-A28M-01 21 37603325 37603325 A G DOPEY2 Missense_Mutation p.E748G 0.10 deleterious(0.03) benign(0.003) TCGA-DM-A28M-01 22 28192812 28192812 G A MN1 Silent p.D1240D 0.54 TCGA-DM-A28M-01 22 51049323 51049323 C T MAPK8IP2 3'UTR 0.38 TCGA-DM-A28M-01 2 141773464 141773464 C T LRP1B Nonsense_Mutation p.W664* 0.27 TCGA-DM-A28M-01 2 166003392 166003392 C T SCN3A Missense_Mutation p.E510K 0.51 tolerated(0.45) probably_damaging(0.979) TCGA-DM-A28M-01 2 166003393 166003393 T C SCN3A Silent p.R509R 0.50 TCGA-DM-A28M-01 2 167141294 167141294 C T SCN9A Missense_Mutation p.R548Q 0.24 deleterious(0.04) possibly_damaging(0.727) TCGA-DM-A28M-01 2 171034796 171034796 C T MYO3B 5'UTR 0.51 TCGA-DM-A28M-01 2 185802794 185802794 A C ZNF804A Missense_Mutation p.T891P 0.09 tolerated(0.11) benign(0.103) TCGA-DM-A28M-01 2 202501491 202501491 T C TMEM237 Missense_Mutation p.K85R 0.11 tolerated(0.16) benign(0.034) TCGA-DM-A28M-01 2 219532801 219532801 C T RNF25 Splice_Site p.X96_splice 0.51 TCGA-DM-A28M-01 2 219562303 219562303 G T STK36 Missense_Mutation p.C960F 0.22 deleterious(0) benign(0.032) TCGA-DM-A28M-01 2 228884423 228884423 C A SPHKAP Missense_Mutation p.D383Y 0.55 deleterious(0) benign(0.379) TCGA-DM-A28M-01 2 237103690 237103690 G A ASB18 Missense_Mutation p.P409L 0.51 tolerated(0.21) benign(0.009) TCGA-DM-A28M-01 2 26686944 26686944 G A OTOF Missense_Mutation p.A1664V 0.21 deleterious(0) benign(0.386) TCGA-DM-A28M-01 2 39088497 39088497 A - DHX57 Frame_Shift_Del p.L352Yfs*47 0.08 TCGA-DM-A28M-01 2 50464101 50464101 C T NRXN1 Silent p.T1164T 0.36 TCGA-DM-A28M-01 2 5840491 5840491 G A SOX11 3'UTR 0.22 TCGA-DM-A28M-01 2 98340772 98340772 C T ZAP70 Silent p.P91P 0.26 TCGA-DM-A28M-01 3 113152513 113152513 T C WDR52 5'UTR 0.09 TCGA-DM-A28M-01 3 141457299 141457299 C T RNF7 Missense_Mutation p.A39V 0.32 deleterious(0) possibly_damaging(0.734) TCGA-DM-A28M-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.51 tolerated(0.11) possibly_damaging(0.529) TCGA-DM-A28M-01 3 186330965 186330965 A G AHSG Missense_Mutation p.Q12R 0.09 deleterious(0.03) benign(0.16) TCGA-DM-A28M-01 3 42732404 42732404 G T KLHL40 Missense_Mutation p.S554I 0.41 deleterious(0.01) possibly_damaging(0.704) TCGA-DM-A28M-01 3 48563099 48563099 C T PFKFB4 Missense_Mutation p.V331I 0.09 benign(0.341) TCGA-DM-A28M-01 3 69105055 69105055 G A UBA3 Missense_Mutation p.S417L 0.14 tolerated(0.28) benign(0.007) TCGA-DM-A28M-01 3 78711212 78711212 C A ROBO1 Silent p.L673L 0.48 TCGA-DM-A28M-01 4 186599616 186599616 G A SORBS2 Silent p.S72S 0.23 TCGA-DM-A28M-01 4 42145503 42145503 C A BEND4 Missense_Mutation p.E332D 0.54 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-DM-A28M-01 4 88996758 88996758 G T PKD2 Missense_Mutation p.R940L 0.50 deleterious(0.01) benign(0.042) TCGA-DM-A28M-01 5 112174119 112174119 C A APC Nonsense_Mutation p.S943* 0.13 TCGA-DM-A28M-01 5 112175530 112175530 G - APC Frame_Shift_Del p.V1414* 0.39 TCGA-DM-A28M-01 5 112770421 112770421 G A TSSK1B Missense_Mutation p.A39V 0.16 deleterious(0) probably_damaging(0.991) TCGA-DM-A28M-01 5 134910265 134910265 C T CXCL14 Missense_Mutation p.R106H 0.19 tolerated_low_confidence(0.39) possibly_damaging(0.84) TCGA-DM-A28M-01 5 140595076 140595076 C T PCDHB13 Missense_Mutation p.R461C 0.25 deleterious_low_confidence(0.01) benign(0.027) TCGA-DM-A28M-01 5 15928355 15928355 G A FBXL7 Missense_Mutation p.E162K 0.75 tolerated(0.27) benign(0.027) TCGA-DM-A28M-01 5 16769293 16769293 T C MYO10 Missense_Mutation p.Q317R 0.09 tolerated(0.47) benign(0.081) TCGA-DM-A28M-01 6 108831483 108831483 G A LACE1 Silent p.P377P 0.14 TCGA-DM-A28M-01 6 151670388 151670388 G A AKAP12 Missense_Mutation p.V288M 0.65 tolerated(0.05) benign(0.051) TCGA-DM-A28M-01 6 159654703 159654703 G A FNDC1 Silent p.S1053S 0.65 TCGA-DM-A28M-01 6 170844489 170844489 C T PSMB1 Missense_Mutation p.G182D 0.31 deleterious(0.01) benign(0.266) TCGA-DM-A28M-01 7 117282541 117282542 - T CFTR Frame_Shift_Ins p.L1258Ffs*7 0.20 TCGA-DM-A28M-01 7 149558878 149558878 G A ZNF862 Missense_Mutation p.V877M 0.15 tolerated(0.09) benign(0.029) TCGA-DM-A28M-01 7 1579896 1579896 G A MAFK Missense_Mutation p.R119H 0.43 deleterious(0.04) benign(0.02) TCGA-DM-A28M-01 7 27169174 27169174 G A HOXA4 Silent p.N211N 0.11 TCGA-DM-A28M-01 7 35675041 35675041 T C HERPUD2 Silent p.T215T 0.25 TCGA-DM-A28M-01 7 42005970 42005970 C A GLI3 Missense_Mutation p.D901Y 0.46 deleterious(0) probably_damaging(0.997) TCGA-DM-A28M-01 7 99022683 99022683 G A ATP5J2-PTCD1 Missense_Mutation p.T540M 0.50 deleterious(0) probably_damaging(0.999) TCGA-DM-A28M-01 8 102555640 102555640 C A GRHL2 Silent p.L64L 0.09 TCGA-DM-A28M-01 8 10555225 10555225 C T C8orf74 Missense_Mutation p.R120C 0.13 tolerated(0.1) benign(0.024) TCGA-DM-A28M-01 8 140631167 140631167 G A KCNK9 Silent p.D153D 0.20 TCGA-DM-A28M-01 8 144893351 144893351 C T SCRIB Silent p.T357T 0.28 TCGA-DM-A28M-01 8 1900913 1900913 G A ARHGEF10 Missense_Mutation p.G1147E 0.51 deleterious(0.01) probably_damaging(0.99) TCGA-DM-A28M-01 9 119106856 119106856 C A PAPPA Missense_Mutation p.P1216T 0.23 tolerated(0.83) possibly_damaging(0.641) TCGA-DM-A28M-01 9 128347849 128347849 C T MAPKAP1 Missense_Mutation p.R219Q 0.55 tolerated(0.16) possibly_damaging(0.906) TCGA-DM-A28M-01 9 134769356 134769356 T - MED27 Frame_Shift_Del p.V200* 0.36 TCGA-DM-A28M-01 9 6329034 6329034 G A TPD52L3 3'UTR 0.17 TCGA-DM-A28M-01 9 79966275 79966275 C T VPS13A Silent p.A2444A 0.25 TCGA-DM-A28M-01 X 119496087 119496087 G A ATP1B4 Splice_Site p.X21_splice 0.82 TCGA-DM-A28M-01 X 153592535 153592535 T C FLNA Splice_Site p.X713_splice 0.10 TCGA-DM-A28M-01 X 40990737 40990737 G T USP9X Silent p.P90P 0.80 TCGA-DM-A28M-01 X 70349064 70349064 A G MED12 Silent p.G1192G 0.12 TCGA-DM-A28M-01 X 73812611 73812611 C T RLIM Missense_Mutation p.R180Q 0.06 tolerated(0.95) unknown(0) TCGA-DM-A28M-01 X 78216662 78216662 A G P2RY10 Silent p.A215A 0.10 TCGA-DM-A28M-01 X 92965192 92965192 T G FAM133A 3'UTR 0.11 TCGA-F4-6459-01 10 102676548 102676548 C G FAM178A Missense_Mutation p.L136V 0.11 tolerated(1) benign(0) TCGA-F4-6459-01 10 118138927 118138927 C T CCDC172 3'UTR 0.05 TCGA-F4-6459-01 10 124189224 124189224 C T PLEKHA1 Missense_Mutation p.R329C 0.16 tolerated(0.19) benign(0.002) TCGA-F4-6459-01 10 125771945 125771945 C T CHST15 Missense_Mutation p.V467I 0.22 tolerated(0.12) possibly_damaging(0.493) TCGA-F4-6459-01 10 129913862 129913862 G A MKI67 Silent p.Y270Y 0.26 TCGA-F4-6459-01 10 51065451 51065451 G C PARG Missense_Mutation p.L267V 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-F4-6459-01 11 14666093 14666093 C G PDE3B Missense_Mutation p.P158A 0.28 tolerated(0.84) possibly_damaging(0.697) TCGA-F4-6459-01 11 2909754 2909754 G A SLC22A18AS Missense_Mutation p.R140C 0.19 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-F4-6459-01 11 57070219 57070219 T A TNKS1BP1 Missense_Mutation p.K1466M 0.38 deleterious(0) possibly_damaging(0.715) TCGA-F4-6459-01 11 57077186 57077187 TT A TNKS1BP1 Frame_Shift_Del p.K1000* 0.41 TCGA-F4-6459-01 11 58384221 58384221 C G ZFP91 Missense_Mutation p.R379G 0.24 deleterious(0.01) probably_damaging(0.949) TCGA-F4-6459-01 11 63719956 63719956 T C NAA40 Missense_Mutation p.I110T 0.24 deleterious(0) benign(0.118) TCGA-F4-6459-01 11 65394451 65394451 C T PCNXL3 Silent p.A1152A 0.11 TCGA-F4-6459-01 12 111345319 111345319 G A CCDC63 3'UTR 0.29 TCGA-F4-6459-01 12 117669772 117669772 T C NOS1 Missense_Mutation p.S1168G 0.18 tolerated(0.25) benign(0.298) TCGA-F4-6459-01 12 122441614 122441614 G A WDR66 Missense_Mutation p.A1132T 0.60 tolerated(0.59) benign(0.025) TCGA-F4-6459-01 12 21036453 21036453 A C SLCO1B3 Missense_Mutation p.K533N 0.18 tolerated(0.29) benign(0.168) TCGA-F4-6459-01 12 40925451 40925451 T G MUC19 Intron 0.12 TCGA-F4-6459-01 12 45105132 45105132 C A NELL2 Missense_Mutation p.D428Y 0.42 deleterious(0.01) possibly_damaging(0.646) TCGA-F4-6459-01 12 63543851 63543851 T C AVPR1A Missense_Mutation p.S256G 0.08 tolerated(0.55) benign(0.001) TCGA-F4-6459-01 12 63954284 63954284 T C DPY19L2 3'UTR 0.18 TCGA-F4-6459-01 12 8050908 8050908 G T NANOGP1 RNA 0.40 TCGA-F4-6459-01 12 85531727 85531727 G C LRRIQ1 Missense_Mutation p.E1437Q 0.29 tolerated(0.05) benign(0.232) TCGA-F4-6459-01 12 98989336 98989336 G A SLC25A3 Splice_Site p.X94_splice 0.25 TCGA-F4-6459-01 14 20444406 20444406 T C OR4K15 Silent p.T243T 0.33 TCGA-F4-6459-01 14 24731459 24731459 G A TGM1 Missense_Mutation p.R34C 0.27 deleterious_low_confidence(0.01) benign(0.215) TCGA-F4-6459-01 14 24974805 24974805 G A CMA1 Missense_Mutation p.R221W 0.29 tolerated(0.12) possibly_damaging(0.896) TCGA-F4-6459-01 14 47504437 47504437 C T MDGA2 Silent p.L532L 0.08 TCGA-F4-6459-01 14 71275641 71275641 G A MAP3K9 Missense_Mutation p.S83F 0.32 deleterious(0) probably_damaging(0.998) TCGA-F4-6459-01 14 73730366 73730366 G A PAPLN Missense_Mutation p.G886S 0.27 tolerated(0.11) benign(0.251) TCGA-F4-6459-01 14 75421901 75421901 G A PGF Silent p.A15A 0.34 TCGA-F4-6459-01 14 96180307 96180307 C T TCL1A Missense_Mutation p.A33T 0.30 tolerated(1) benign(0.008) TCGA-F4-6459-01 15 100214806 100214806 C A MEF2A Missense_Mutation p.T202N 0.13 tolerated(0.06) benign(0.181) TCGA-F4-6459-01 15 101031086 101031086 C T CERS3 Missense_Mutation p.R75Q 0.34 tolerated(0.13) benign(0.003) TCGA-F4-6459-01 15 42363030 42363030 A G PLA2G4D Missense_Mutation p.L643P 0.08 deleterious(0) probably_damaging(0.933) TCGA-F4-6459-01 15 43620898 43620898 T G LCMT2 Missense_Mutation p.K597T 0.26 deleterious(0.01) benign(0.045) TCGA-F4-6459-01 16 49669701 49669701 C T ZNF423 Missense_Mutation p.R1121H 0.19 deleterious(0) probably_damaging(0.967) TCGA-F4-6459-01 16 70884537 70884537 G A HYDIN Silent p.F4155F 0.39 TCGA-F4-6459-01 16 72832084 72832084 C T ZFHX3 Silent p.L1499L 0.11 TCGA-F4-6459-01 16 88800059 88800059 C T PIEZO1 Silent p.R808R 0.35 TCGA-F4-6459-01 16 89350876 89350876 C T ANKRD11 Missense_Mutation p.D692N 0.08 benign(0.142) TCGA-F4-6459-01 17 15983339 15983339 C T NCOR1 Missense_Mutation p.G1147E 0.12 probably_damaging(1) TCGA-F4-6459-01 17 28506213 28506213 G T NSRP1 Nonsense_Mutation p.E136* 0.31 TCGA-F4-6459-01 17 37840912 37840912 G - PGAP3 Frame_Shift_Del p.R124Afs*84 0.38 TCGA-F4-6459-01 17 39596686 39596686 T G KRT38 Missense_Mutation p.Q163P 0.61 deleterious(0) probably_damaging(0.938) TCGA-F4-6459-01 17 67218791 67218791 G A ABCA10 Missense_Mutation p.L28F 0.24 tolerated(0.17) benign(0.216) TCGA-F4-6459-01 17 7251702 7251702 G A ACAP1 Missense_Mutation p.R529Q 0.22 tolerated(0.18) benign(0.042) TCGA-F4-6459-01 17 73643889 73643889 C A SMIM6 3'UTR 0.10 TCGA-F4-6459-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.56 deleterious(0) probably_damaging(1) TCGA-F4-6459-01 18 22775208 22775208 T A ZNF521 Nonsense_Mutation p.K1192* 0.53 TCGA-F4-6459-01 18 44229166 44229166 G T LOXHD1 Missense_Mutation p.T66K 0.22 deleterious(0.03) probably_damaging(0.941) TCGA-F4-6459-01 18 45566674 45566674 G A ZBTB7C Nonsense_Mutation p.Q269* 0.39 TCGA-F4-6459-01 18 6243291 6243291 A T L3MBTL4 Splice_Site p.X154_splice 0.32 TCGA-F4-6459-01 19 12155657 12155657 G A ZNF878 Missense_Mutation p.R187C 0.38 deleterious(0.04) possibly_damaging(0.744) TCGA-F4-6459-01 19 18331715 18331715 G T PDE4C Missense_Mutation p.N188K 0.28 tolerated(0.27) benign(0.001) TCGA-F4-6459-01 19 35633675 35633675 G T FXYD1 3'UTR 0.27 TCGA-F4-6459-01 19 36365755 36365755 A G APLP1 Missense_Mutation p.Q443R 0.19 deleterious(0.01) possibly_damaging(0.561) TCGA-F4-6459-01 19 3760131 3760131 G A APBA3 Silent p.P44P 0.35 TCGA-F4-6459-01 19 41743942 41743942 C A AXL Missense_Mutation p.Q293K 0.26 tolerated(0.91) benign(0.005) TCGA-F4-6459-01 19 42737350 42737350 C - GSK3A Frame_Shift_Del p.G337Efs*11 0.38 TCGA-F4-6459-01 19 49005737 49005737 C G LMTK3 Missense_Mutation p.E278D 0.08 possibly_damaging(0.646) TCGA-F4-6459-01 1 10238748 10238748 G A UBE4B Missense_Mutation p.R1191Q 0.17 tolerated(0.26) benign(0.112) TCGA-F4-6459-01 1 1375851 1375851 C T VWA1 3'UTR 0.26 TCGA-F4-6459-01 1 152276549 152276549 T A FLG Missense_Mutation p.N3605Y 0.15 unknown(0) TCGA-F4-6459-01 1 152883109 152883109 A G IVL Missense_Mutation p.Q279R 0.23 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-F4-6459-01 1 155187321 155187321 G A MTX1 3'Flank 0.22 TCGA-F4-6459-01 1 156722157 156722157 C G HDGF 5'UTR 0.21 TCGA-F4-6459-01 1 158390240 158390240 C G OR10K2 Silent p.G139G 0.26 TCGA-F4-6459-01 1 20302200 20302200 A T PLA2G2A Silent p.R143R 0.28 TCGA-F4-6459-01 1 218504392 218504392 G C RRP15 Missense_Mutation p.D270H 0.24 deleterious(0.03) benign(0.061) TCGA-F4-6459-01 1 32084785 32084785 C A HCRTR1 5'UTR 0.33 TCGA-F4-6459-01 1 36550844 36550844 C A TEKT2 Missense_Mutation p.D79E 0.20 tolerated(0.91) benign(0.02) TCGA-F4-6459-01 1 38185154 38185154 G C EPHA10 Missense_Mutation p.I896M 0.16 deleterious(0) probably_damaging(0.998) TCGA-F4-6459-01 1 62330185 62330185 A G INADL Silent p.E905E 0.36 TCGA-F4-6459-01 1 762825 762825 C A LINC00115 RNA 0.28 TCGA-F4-6459-01 20 2375889 2375889 G A TGM6 Silent p.S77S 0.31 TCGA-F4-6459-01 20 3670715 3670715 C G SIGLEC1 Silent p.L1596L 0.16 TCGA-F4-6459-01 20 58571488 58571488 A G CDH26 Intron 0.11 TCGA-F4-6459-01 20 62152700 62152700 C T PPDPF Silent p.T13T 0.12 TCGA-F4-6459-01 20 62174791 62174791 G A SRMS Missense_Mutation p.A174V 0.19 tolerated(0.43) benign(0.063) TCGA-F4-6459-01 20 62614419 62614419 C T PRPF6 Missense_Mutation p.R31W 0.12 deleterious(0) probably_damaging(1) TCGA-F4-6459-01 21 33039670 33039670 C T SOD1 Silent p.I113I 0.33 TCGA-F4-6459-01 21 38612803 38612803 A G DSCR3 Silent p.S65S 0.08 TCGA-F4-6459-01 21 41711085 41711085 C G DSCAM Missense_Mutation p.A490P 0.41 tolerated(0.2) probably_damaging(0.994) TCGA-F4-6459-01 21 41711086 41711086 C A DSCAM Silent p.S489S 0.39 TCGA-F4-6459-01 22 36122726 36122726 G A APOL5 Missense_Mutation p.R204Q 0.25 tolerated(0.23) possibly_damaging(0.679) TCGA-F4-6459-01 22 37538550 37538550 C T IL2RB Missense_Mutation p.R69Q 0.36 tolerated(0.59) benign(0) TCGA-F4-6459-01 22 50705046 50705046 C T MAPK11 Intron 0.21 TCGA-F4-6459-01 2 165986765 165986765 A C SCN3A Missense_Mutation p.N869K 0.13 deleterious(0.03) probably_damaging(0.932) TCGA-F4-6459-01 2 179403542 179403542 A T TTN Missense_Mutation p.L33005H 0.12 TCGA-F4-6459-01 2 179441559 179441559 C A TTN Splice_Site p.X23138_splice 0.28 TCGA-F4-6459-01 2 179641783 179641783 A T TTN Intron 0.13 TCGA-F4-6459-01 2 179736975 179736975 T C CCDC141 Missense_Mutation p.N655S 0.24 tolerated(0.27) benign(0.005) TCGA-F4-6459-01 2 196682515 196682515 C T DNAH7 Missense_Mutation p.M3110I 0.13 deleterious(0.04) benign(0.01) TCGA-F4-6459-01 2 198641827 198641827 C T BOLL Missense_Mutation p.V90I 0.41 tolerated(0.51) benign(0.009) TCGA-F4-6459-01 2 217234804 217234804 C T MARCH4 Silent p.A60A 0.51 TCGA-F4-6459-01 2 218939967 218939967 A T RUFY4 Missense_Mutation p.K271M 0.12 deleterious(0) probably_damaging(0.963) TCGA-F4-6459-01 2 220033551 220033551 G C SLC23A3 Missense_Mutation p.S174C 0.25 deleterious(0.03) benign(0.174) TCGA-F4-6459-01 2 223464783 223464783 G C FARSB Nonsense_Mutation p.Y494* 0.26 TCGA-F4-6459-01 2 27804763 27804763 G A C2orf16 Missense_Mutation p.R1775H 0.11 tolerated(0.62) benign(0.014) TCGA-F4-6459-01 2 44078951 44078951 G A ABCG8 Missense_Mutation p.R184H 0.12 deleterious(0.03) benign(0.444) TCGA-F4-6459-01 2 64863959 64863959 C A SERTAD2 Missense_Mutation p.G16V 0.63 tolerated(0.08) possibly_damaging(0.507) TCGA-F4-6459-01 2 73518855 73518855 G C EGR4 Silent p.L500L 0.14 TCGA-F4-6459-01 3 122632706 122632706 G A SEMA5B Missense_Mutation p.R765W 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-F4-6459-01 3 14863028 14863029 - C FGD5 Frame_Shift_Ins p.D818* 0.16 TCGA-F4-6459-01 3 150480240 150480240 C T SIAH2 Missense_Mutation p.A133T 0.34 tolerated(0.89) benign(0.01) TCGA-F4-6459-01 3 152132740 152132740 C T MBNL1 Missense_Mutation p.S62F 0.32 deleterious(0) probably_damaging(0.999) TCGA-F4-6459-01 3 3084709 3084709 C T CNTN4 Nonsense_Mutation p.R854* 0.37 TCGA-F4-6459-01 3 44763470 44763470 G A ZNF502 Silent p.A387A 0.45 TCGA-F4-6459-01 3 69986977 69986977 A T MITF Missense_Mutation p.Q120L 0.26 deleterious(0) probably_damaging(0.99) TCGA-F4-6459-01 3 70014455 70014455 T G MITF 3'UTR 0.20 TCGA-F4-6459-01 3 97311548 97311548 G A EPHA6 Missense_Mutation p.G827R 0.29 tolerated_low_confidence(0.1) benign(0.001) TCGA-F4-6459-01 4 108535511 108535511 C T PAPSS1 Missense_Mutation p.R590Q 0.21 tolerated(0.09) possibly_damaging(0.593) TCGA-F4-6459-01 4 165961881 165961881 C A TRIM60 Missense_Mutation p.N219K 0.21 deleterious(0.03) benign(0.139) TCGA-F4-6459-01 4 3237008 3237008 C T HTT Intron 0.39 TCGA-F4-6459-01 4 628550 628550 G A PDE6B Missense_Mutation p.D185N 0.12 deleterious(0) possibly_damaging(0.878) TCGA-F4-6459-01 4 84347163 84347163 C A HELQ Missense_Mutation p.G920V 0.09 deleterious(0) probably_damaging(0.973) TCGA-F4-6459-01 5 112175037 112175037 G - APC Frame_Shift_Del p.C1249Sfs*16 0.41 TCGA-F4-6459-01 5 140237879 140237879 C T PCDHA10 Missense_Mutation p.S749L 0.67 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-F4-6459-01 5 140810563 140810563 G A PCDHGA12 Silent p.P79P 0.61 TCGA-F4-6459-01 5 150947760 150947760 G A FAT2 Missense_Mutation p.H245Y 0.14 benign(0.005) TCGA-F4-6459-01 5 154396778 154396778 G A KIF4B Missense_Mutation p.R1120Q 0.49 tolerated(0.08) benign(0.077) TCGA-F4-6459-01 5 21751802 21751802 T A CDH12 3'UTR 0.41 TCGA-F4-6459-01 5 34811141 34811141 G A RAI14 Missense_Mutation p.A162T 0.70 tolerated(0.06) benign(0.263) TCGA-F4-6459-01 5 44809033 44809033 G A MRPS30 5'UTR 0.58 TCGA-F4-6459-01 5 99871226 99871226 C T FAM174A 5'UTR 0.34 TCGA-F4-6459-01 6 116875413 116875413 C T FAM26D Nonsense_Mutation p.R10* 0.27 TCGA-F4-6459-01 6 142409418 142409418 G A NMBR Silent p.S126S 0.36 TCGA-F4-6459-01 6 155757572 155757573 - C NOX3 Frame_Shift_Ins p.F260Vfs*22 0.14 TCGA-F4-6459-01 6 167729008 167729008 C T UNC93A 3'UTR 0.28 TCGA-F4-6459-01 6 26385375 26385375 C G BTN2A2 Missense_Mutation p.S76C 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-F4-6459-01 6 29012499 29012499 T G OR2W1 Missense_Mutation p.S152R 0.21 deleterious(0) probably_damaging(0.992) TCGA-F4-6459-01 6 30229466 30229466 G T HCG17 Intron 0.26 TCGA-F4-6459-01 6 31852712 31852712 C T EHMT2 Missense_Mutation p.A809T 0.10 deleterious(0) probably_damaging(0.966) TCGA-F4-6459-01 6 49665620 49665620 G T CRISP2 Silent p.P156P 0.16 TCGA-F4-6459-01 6 54806079 54806079 G - FAM83B Frame_Shift_Del p.S772Lfs*4 0.20 TCGA-F4-6459-01 7 101882791 101882792 AA T CUX1 Frame_Shift_Del p.K1283* 0.19 TCGA-F4-6459-01 7 107746372 107746372 A G LAMB4 Missense_Mutation p.Y254H 0.13 deleterious(0) probably_damaging(0.999) TCGA-F4-6459-01 7 143806974 143806975 - T OR2A2 Frame_Shift_Ins p.L102Ffs*19 0.11 TCGA-F4-6459-01 7 20193972 20193972 G A MACC1 Silent p.V730V 0.10 TCGA-F4-6459-01 7 23214062 23214062 C G KLHL7 3'UTR 0.42 TCGA-F4-6459-01 7 23830524 23830524 C T STK31 Missense_Mutation p.P907S 0.09 tolerated(0.1) benign(0.262) TCGA-F4-6459-01 7 4185541 4185541 G T SDK1 Missense_Mutation p.E1472D 0.15 deleterious(0.02) benign(0.144) TCGA-F4-6459-01 7 5112729 5112729 G A RBAK-RBAKDN 3'UTR 0.08 TCGA-F4-6459-01 7 82508735 82508735 C T PCLO Silent p.P4524P 0.12 TCGA-F4-6459-01 7 99317954 99317954 A G CYP3A7 Silent p.S100S 0.18 TCGA-F4-6459-01 8 109240549 109240549 G T EIF3E Missense_Mutation p.F223L 0.11 deleterious(0) probably_damaging(0.997) TCGA-F4-6459-01 8 113402990 113402990 C T CSMD3 Missense_Mutation p.R1946H 0.22 deleterious(0) probably_damaging(0.999) TCGA-F4-6459-01 8 131127973 131127973 C G ASAP1 Missense_Mutation p.Q691H 0.11 deleterious(0) probably_damaging(0.924) TCGA-F4-6459-01 8 69050677 69050677 A G PREX2 Missense_Mutation p.T1338A 0.14 tolerated(0.15) benign(0.087) TCGA-F4-6459-01 8 75276514 75276514 C T GDAP1 Missense_Mutation p.A330V 0.07 tolerated(0.1) benign(0.001) TCGA-F4-6459-01 8 77764170 77764171 - A ZFHX4 Frame_Shift_Ins p.Q1674Afs*4 0.13 TCGA-F4-6459-01 9 115759612 115759612 G A ZNF883 RNA 0.43 TCGA-F4-6459-01 9 117798428 117798428 C T TNC Missense_Mutation p.A1869T 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6459-01 9 117798429 117798429 A T TNC Missense_Mutation p.F1868L 0.10 tolerated(0.48) benign(0.026) TCGA-F4-6459-01 9 127245228 127245228 C T NR5A1 Missense_Mutation p.A399T 0.20 tolerated(0.2) benign(0.015) TCGA-F4-6459-01 9 131048436 131048436 C T SWI5 Intron 0.27 TCGA-F4-6459-01 9 140135805 140135805 C A TUBB4B 5'UTR 0.50 TCGA-F4-6459-01 9 38571924 38571924 A G ANKRD18A 3'UTR 0.41 TCGA-F4-6459-01 9 5763420 5763420 A G KIAA1432 Missense_Mutation p.Y798C 0.35 deleterious(0) benign(0.372) TCGA-F4-6459-01 9 95477498 95477498 C T BICD2 Missense_Mutation p.E836K 0.12 tolerated_low_confidence(0.18) benign(0.239) TCGA-F4-6459-01 X 100542606 100542606 T G TAF7L Intron 0.06 TCGA-F4-6459-01 X 103430889 103430889 A C FAM199X Missense_Mutation p.D187A 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-F4-6459-01 X 105451918 105451918 A C MUM1L1 3'UTR 0.11 TCGA-F4-6459-01 X 105937304 105937304 A G RNF128 Silent p.A24A 0.28 TCGA-F4-6459-01 X 107400407 107400407 G A COL4A6 Silent p.F1633F 0.45 TCGA-F4-6459-01 X 118723187 118723190 AATA - NKRF 3'UTR 0.43 TCGA-F4-6459-01 X 120182230 120182230 G A GLUD2 Missense_Mutation p.R231Q 0.38 deleterious(0.03) probably_damaging(0.962) TCGA-F4-6459-01 X 135080659 135080659 C A SLC9A6 Missense_Mutation p.L208I 0.16 tolerated(0.22) benign(0.031) TCGA-F4-6459-01 X 148797989 148797989 A C MAGEA11 Missense_Mutation p.E281D 0.06 deleterious(0.01) benign(0.304) TCGA-F4-6459-01 X 152771995 152771995 G A BGN Missense_Mutation p.G192R 0.37 tolerated(0.24) benign(0.333) TCGA-F4-6459-01 X 153696708 153696708 C T PLXNA3 Silent p.F1342F 0.12 TCGA-F4-6459-01 X 21772397 21772397 C T SMPX Silent p.S4S 0.22 TCGA-F4-6459-01 X 38146358 38146358 C G RPGR Missense_Mutation p.D632H 0.04 possibly_damaging(0.531) TCGA-F4-6459-01 X 40569382 40569382 C A MED14 Splice_Site p.X341_splice 0.09 TCGA-F4-6459-01 X 41437665 41437665 G A CASK Silent p.N477N 0.46 TCGA-F4-6459-01 X 47433415 47433415 C T SYN1 Silent p.P656P 0.53 TCGA-F4-6459-01 X 48688095 48688095 G A ERAS Missense_Mutation p.V188M 0.40 deleterious(0) probably_damaging(0.974) TCGA-F4-6459-01 X 49075818 49075818 C G CACNA1F Missense_Mutation p.A890P 0.10 deleterious(0) possibly_damaging(0.636) TCGA-F4-6459-01 X 53562355 53562355 C G HUWE1 Missense_Mutation p.M4213I 0.19 unknown(0) TCGA-F4-6459-01 X 54275834 54275834 A C WNK3 Missense_Mutation p.S983A 0.08 tolerated_low_confidence(0.12) benign(0.257) TCGA-F4-6459-01 X 54497902 54497902 C T FGD1 Missense_Mutation p.R109Q 0.46 tolerated_low_confidence(0.08) possibly_damaging(0.602) TCGA-F4-6459-01 X 57622527 57622527 C T ZXDB 3'UTR 0.16 TCGA-F4-6459-01 X 71360445 71360445 C T NHSL2 Missense_Mutation p.T1016I 0.11 tolerated(0.19) benign(0.055) TCGA-F4-6459-01 X 7223223 7223223 A T STS Missense_Mutation p.K365N 0.15 deleterious(0.03) probably_damaging(0.99) TCGA-F4-6459-01 X 7268020 7268020 C T STS Silent p.F490F 0.22 TCGA-F4-6459-01 X 74519723 74519723 C T UPRT Missense_Mutation p.P239L 0.26 deleterious(0) probably_damaging(1) TCGA-F4-6460-01 10 100189548 100189548 C T HPS1 Silent p.T289T 0.25 TCGA-F4-6460-01 10 102748733 102748733 C T C10orf2 Nonsense_Mutation p.R256* 0.35 TCGA-F4-6460-01 10 23003139 23003139 G T PIP4K2A Missense_Mutation p.S39R 0.19 deleterious(0) benign(0.11) TCGA-F4-6460-01 10 23731259 23731259 G A OTUD1 3'UTR 0.12 TCGA-F4-6460-01 10 62648478 62648478 C G RHOBTB1 Missense_Mutation p.Q316H 0.22 tolerated(0.17) benign(0.002) TCGA-F4-6460-01 10 63943942 63943942 T C RTKN2 3'UTR 0.09 TCGA-F4-6460-01 10 81701822 81701822 T C SFTPD Silent p.E146E 0.18 TCGA-F4-6460-01 10 92508700 92508700 G T HTR7 Missense_Mutation p.S397R 0.20 tolerated(0.28) benign(0.142) TCGA-F4-6460-01 10 98078144 98078144 C T DNTT Missense_Mutation p.S80L 0.26 deleterious(0) probably_damaging(0.983) TCGA-F4-6460-01 10 98791369 98791369 C T SLIT1 Missense_Mutation p.R835H 0.44 deleterious(0) probably_damaging(0.999) TCGA-F4-6460-01 11 113105876 113105876 G A NCAM1 Silent p.T654T 0.33 TCGA-F4-6460-01 11 130332581 130332581 G A ADAMTS15 Missense_Mutation p.R483H 0.34 deleterious(0) probably_damaging(0.999) TCGA-F4-6460-01 11 132399021 132399021 T A OPCML Missense_Mutation p.T154S 0.38 tolerated(0.74) benign(0.01) TCGA-F4-6460-01 11 18159220 18159220 G T MRGPRX3 Missense_Mutation p.E157D 0.24 tolerated(0.29) benign(0.02) TCGA-F4-6460-01 11 36248640 36248640 G A LDLRAD3 Missense_Mutation p.G154S 0.53 tolerated(0.13) benign(0.078) TCGA-F4-6460-01 11 5322356 5322356 C G OR51B4 Missense_Mutation p.S274T 0.08 deleterious(0.02) possibly_damaging(0.904) TCGA-F4-6460-01 11 5536800 5536800 C T UBQLNL Missense_Mutation p.G291E 0.18 tolerated(0.05) possibly_damaging(0.573) TCGA-F4-6460-01 11 55659181 55659181 C A TRIM51 3'UTR 0.28 TCGA-F4-6460-01 11 56511149 56511149 G T OR9G4 Missense_Mutation p.L47M 0.20 deleterious(0.01) benign(0.4) TCGA-F4-6460-01 11 63767792 63767792 C T MACROD1 Missense_Mutation p.A191T 0.21 deleterious(0) probably_damaging(0.999) TCGA-F4-6460-01 11 66259017 66259017 G A DPP3 Missense_Mutation p.S284N 0.30 deleterious(0.05) possibly_damaging(0.676) TCGA-F4-6460-01 11 6652030 6652030 G C DCHS1 Missense_Mutation p.P1332R 0.35 tolerated(0.55) benign(0.056) TCGA-F4-6460-01 11 72947096 72947096 C A P2RY2 3'UTR 0.20 TCGA-F4-6460-01 11 78380239 78380239 G C TENM4 Missense_Mutation p.A2384G 0.23 tolerated(0.1) probably_damaging(0.965) TCGA-F4-6460-01 11 7960635 7960635 C G OR10A3 Missense_Mutation p.V145L 0.22 tolerated(0.1) benign(0.019) TCGA-F4-6460-01 11 8118330 8118330 G T TUB Missense_Mutation p.A277S 0.18 tolerated(0.1) probably_damaging(0.997) TCGA-F4-6460-01 11 8639442 8639442 C T TRIM66 3'UTR 0.24 TCGA-F4-6460-01 11 93545020 93545020 T A MED17 Silent p.V582V 0.28 TCGA-F4-6460-01 11 93545024 93545024 A G MED17 Missense_Mutation p.N584D 0.29 tolerated(0.24) benign(0.444) TCGA-F4-6460-01 11 985449 985449 G C AP2A2 Missense_Mutation p.G277R 0.24 tolerated(0.11) benign(0.219) TCGA-F4-6460-01 12 112630465 112630465 G A HECTD4 Missense_Mutation p.P2918L 0.36 possibly_damaging(0.607) TCGA-F4-6460-01 12 124419910 124419910 C G DNAH10 Missense_Mutation p.T4433S 0.29 probably_damaging(0.999) TCGA-F4-6460-01 12 22354748 22354748 G T ST8SIA1 Missense_Mutation p.A270D 0.18 deleterious(0) probably_damaging(0.961) TCGA-F4-6460-01 12 2786965 2786965 G A CACNA1C Missense_Mutation p.A1723T 0.08 tolerated(0.44) benign(0.032) TCGA-F4-6460-01 12 40714900 40714900 C T LRRK2 Silent p.L1694L 0.30 TCGA-F4-6460-01 12 47629677 47629677 G T PCED1B Silent p.G277G 0.35 TCGA-F4-6460-01 12 48961692 48961692 G T LALBA 3'UTR 0.43 TCGA-F4-6460-01 12 52710328 52710328 C T KRT83 Missense_Mutation p.R322H 0.35 tolerated(0.07) benign(0.12) TCGA-F4-6460-01 12 54960854 54960854 C A PDE1B Silent p.V70V 0.37 TCGA-F4-6460-01 12 89861440 89861440 A G POC1B Missense_Mutation p.F278S 0.08 deleterious(0.02) probably_damaging(1) TCGA-F4-6460-01 13 113487324 113487324 G A ATP11A Missense_Mutation p.E516K 0.16 tolerated(0.31) benign(0.304) TCGA-F4-6460-01 13 19751640 19751640 G A TUBA3C Silent p.Y161Y 0.17 TCGA-F4-6460-01 13 24519996 24519996 C T ANKRD20A19P RNA 0.17 TCGA-F4-6460-01 13 24797555 24797555 C T SPATA13 Missense_Mutation p.P163L 0.09 tolerated_low_confidence(0.16) benign(0.002) TCGA-F4-6460-01 13 24871873 24871873 G A SPATA13 Missense_Mutation p.G1195R 0.15 deleterious(0) probably_damaging(0.997) TCGA-F4-6460-01 13 31513895 31513895 A G TEX26 Silent p.G42G 0.38 TCGA-F4-6460-01 13 32900734 32900734 T G BRCA2 Missense_Mutation p.S205R 0.35 deleterious(0) probably_damaging(0.986) TCGA-F4-6460-01 13 32912795 32912795 A C BRCA2 Missense_Mutation p.N1435H 0.34 deleterious(0) probably_damaging(0.992) TCGA-F4-6460-01 13 36348620 36348621 - C DCLK1 3'UTR 0.11 TCGA-F4-6460-01 13 38320447 38320447 C T TRPC4 Missense_Mutation p.R175H 0.12 tolerated(0.08) possibly_damaging(0.462) TCGA-F4-6460-01 13 46543093 46543093 G A ZC3H13 Missense_Mutation p.R1196W 0.12 unknown(0) TCGA-F4-6460-01 13 53422471 53422471 T C PCDH8 Missense_Mutation p.Y34C 0.28 deleterious(0) probably_damaging(0.998) TCGA-F4-6460-01 14 100129283 100129283 G A HHIPL1 Missense_Mutation p.G525S 0.33 tolerated(0.08) probably_damaging(0.946) TCGA-F4-6460-01 14 33292214 33292214 T C AKAP6 Missense_Mutation p.V1732A 0.08 tolerated(0.48) benign(0.341) TCGA-F4-6460-01 14 42356085 42356085 C T LRFN5 Missense_Mutation p.T86I 0.20 deleterious(0.04) probably_damaging(0.996) TCGA-F4-6460-01 14 60193954 60193954 C T RTN1 Missense_Mutation p.R483Q 0.33 deleterious(0) probably_damaging(0.95) TCGA-F4-6460-01 14 68117616 68117616 T C ARG2 Silent p.N348N 0.24 TCGA-F4-6460-01 14 72190381 72190381 A G SIPA1L1 Missense_Mutation p.H1430R 0.35 tolerated(0.42) probably_damaging(0.921) TCGA-F4-6460-01 15 51350204 51350204 G A TNFAIP8L3 Silent p.H251H 0.24 TCGA-F4-6460-01 15 63358288 63358288 A G TPM1 Intron 0.16 TCGA-F4-6460-01 15 81641814 81641814 C T TMC3 Missense_Mutation p.R393H 0.28 deleterious(0) probably_damaging(0.994) TCGA-F4-6460-01 16 318826 318826 C T ITFG3 Missense_Mutation p.P500L 0.30 tolerated(0.07) probably_damaging(0.988) TCGA-F4-6460-01 16 3586108 3586108 T - CLUAP1 Intron 0.12 TCGA-F4-6460-01 16 49671836 49671836 A G ZNF423 Silent p.Y409Y 0.18 TCGA-F4-6460-01 16 53737972 53737972 T G FTO 5'UTR 0.21 TCGA-F4-6460-01 16 58749916 58749916 A - GOT2 Splice_Site p.X340_splice 0.37 TCGA-F4-6460-01 16 72828658 72828658 G A ZFHX3 Silent p.D2641D 0.12 TCGA-F4-6460-01 17 10439860 10439860 G T MYH2 Missense_Mutation p.S654Y 0.46 deleterious(0) possibly_damaging(0.892) TCGA-F4-6460-01 17 14683242 14683242 C T AC005863.1 RNA 0.39 TCGA-F4-6460-01 17 4686283 4686283 T C TM4SF5 Missense_Mutation p.L177P 0.64 deleterious(0) probably_damaging(0.912) TCGA-F4-6460-01 17 73754647 73754647 C T GALK1 Missense_Mutation p.R276Q 0.27 tolerated(0.11) benign(0.006) TCGA-F4-6460-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.55 tolerated(0.09) benign(0.344) TCGA-F4-6460-01 17 7681740 7681740 G A DNAH2 Missense_Mutation p.G1832S 0.10 probably_damaging(1) TCGA-F4-6460-01 17 9885191 9885191 C G GAS7 Missense_Mutation p.W105C 0.33 deleterious(0) probably_damaging(1) TCGA-F4-6460-01 18 24496960 24496960 G T CHST9 Missense_Mutation p.L199I 0.35 tolerated(0.26) benign(0.062) TCGA-F4-6460-01 18 28581673 28581673 C T DSC3 Missense_Mutation p.G716S 0.10 tolerated(0.23) benign(0.007) TCGA-F4-6460-01 18 61460422 61460423 - T SERPINB7 Frame_Shift_Ins p.S85Ffs*2 0.32 TCGA-F4-6460-01 19 22363021 22363021 T A ZNF676 Missense_Mutation p.T500S 0.26 tolerated(0.18) benign(0.107) TCGA-F4-6460-01 19 2515044 2515044 G A GNG7 Silent p.D61D 0.46 TCGA-F4-6460-01 19 35831973 35831973 C T CD22 Missense_Mutation p.T480I 0.15 tolerated(0.19) benign(0.216) TCGA-F4-6460-01 19 38189567 38189568 TA - ZNF607 Nonsense_Mutation p.Y488* 0.11 TCGA-F4-6460-01 19 38876168 38876168 G A GGN Silent p.R578R 0.27 TCGA-F4-6460-01 19 39734313 39734313 G A IFNL3 Nonsense_Mutation p.R184* 0.47 TCGA-F4-6460-01 19 40322493 40322493 C T DYRK1B Silent p.P5P 0.25 TCGA-F4-6460-01 19 4175889 4175889 G A SIRT6 Silent p.A161A 0.51 TCGA-F4-6460-01 19 43702332 43702332 C T PSG4 Missense_Mutation p.A176T 0.54 tolerated(1) benign(0.182) TCGA-F4-6460-01 19 51296989 51296989 C T ACPT Missense_Mutation p.R232W 0.31 deleterious(0.01) possibly_damaging(0.822) TCGA-F4-6460-01 19 52528994 52528994 A G ZNF614 Missense_Mutation p.I2T 0.38 tolerated(0.22) benign(0.003) TCGA-F4-6460-01 19 52794005 52794005 C T ZNF766 Missense_Mutation p.H321Y 0.31 deleterious(0.04) benign(0.008) TCGA-F4-6460-01 19 52824985 52824985 G T ZNF480 Missense_Mutation p.S161I 0.34 tolerated(0.25) possibly_damaging(0.454) TCGA-F4-6460-01 19 53854856 53854856 C T ZNF845 Nonsense_Mutation p.R310* 0.44 TCGA-F4-6460-01 19 56011423 56011423 C T SSC5D Missense_Mutation p.T649M 0.31 probably_damaging(0.977) TCGA-F4-6460-01 19 57134817 57134817 A T ZNF71 3'UTR 0.37 TCGA-F4-6460-01 19 57643050 57643050 C T USP29 3'UTR 0.34 TCGA-F4-6460-01 1 100154878 100154878 G A PALMD Silent p.S354S 0.38 TCGA-F4-6460-01 1 110596450 110596450 T C STRIP1 Silent p.P810P 0.14 TCGA-F4-6460-01 1 144879270 144879270 T A PDE4DIP Nonsense_Mutation p.R1394* 0.28 TCGA-F4-6460-01 1 144879272 144879272 T C PDE4DIP Missense_Mutation p.E1393G 0.28 deleterious(0) probably_damaging(0.999) TCGA-F4-6460-01 1 149900915 149900915 A C MTMR11 3'UTR 0.30 TCGA-F4-6460-01 1 184767259 184767259 G C FAM129A Silent p.V540V 0.20 TCGA-F4-6460-01 1 196577371 196577371 C A KCNT2 Silent p.G23G 0.23 TCGA-F4-6460-01 1 197009711 197009711 T A F13B Silent p.I631I 0.23 TCGA-F4-6460-01 1 205306704 205306704 G A KLHDC8A Silent p.V292V 0.51 TCGA-F4-6460-01 1 205897957 205897957 G A SLC26A9 Silent p.R317R 0.16 TCGA-F4-6460-01 1 214171349 214171349 T C PROX1 Missense_Mutation p.Y491H 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-F4-6460-01 1 229568490 229568490 G T ACTA1 Missense_Mutation p.H89Q 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.749) TCGA-F4-6460-01 1 248264085 248264085 T C OR2L13 3'UTR 0.19 TCGA-F4-6460-01 1 82408936 82408936 G A LPHN2 Silent p.R227R 0.37 TCGA-F4-6460-01 1 8386032 8386032 C T SLC45A1 Silent p.H215H 0.77 TCGA-F4-6460-01 1 85725182 85725182 C T C1orf52 Silent p.A45A 0.09 TCGA-F4-6460-01 1 89481075 89481075 C A GBP3 Silent p.V71V 0.37 TCGA-F4-6460-01 20 1350583 1350584 - AA FKBP1A 3'UTR 0.10 TCGA-F4-6460-01 20 1458003 1458003 G T SIRPB2 Missense_Mutation p.A280E 0.10 tolerated(0.55) benign(0.115) TCGA-F4-6460-01 20 23016628 23016628 G A SSTR4 Missense_Mutation p.V170M 0.56 deleterious(0.02) probably_damaging(0.968) TCGA-F4-6460-01 20 37356330 37356330 C T SLC32A1 Missense_Mutation p.A209V 0.11 deleterious(0.01) benign(0.233) TCGA-F4-6460-01 21 19642313 19642313 G A TMPRSS15 Silent p.T1011T 0.25 TCGA-F4-6460-01 22 37892548 37892548 C A CARD10 Missense_Mutation p.G656V 0.15 tolerated(0.5) possibly_damaging(0.575) TCGA-F4-6460-01 22 50893255 50893255 G A SBF1 Silent p.P1600P 0.30 TCGA-F4-6460-01 2 141660602 141660602 C A LRP1B Missense_Mutation p.C1218F 0.21 benign(0.308) TCGA-F4-6460-01 2 144903167 144903167 G T GTDC1 Missense_Mutation p.Q107K 0.24 deleterious(0) probably_damaging(0.987) TCGA-F4-6460-01 2 174074625 174074625 G A MLTK Intron 0.26 TCGA-F4-6460-01 2 17697899 17697899 G A RAD51AP2 Missense_Mutation p.T595I 0.28 tolerated(0.62) benign(0.111) TCGA-F4-6460-01 2 183853856 183853856 C A NCKAP1 Missense_Mutation p.W289C 0.37 deleterious(0) probably_damaging(0.967) TCGA-F4-6460-01 2 185801225 185801225 G T ZNF804A Missense_Mutation p.D368Y 0.12 deleterious(0) benign(0.361) TCGA-F4-6460-01 2 190044453 190044453 C A COL5A2 5'UTR 0.40 TCGA-F4-6460-01 2 21225905 21225905 A C APOB Missense_Mutation p.F4130C 0.20 benign(0.43) TCGA-F4-6460-01 2 218947843 218947843 G C RUFY4 Missense_Mutation p.E476Q 0.24 tolerated(0.17) benign(0.074) TCGA-F4-6460-01 2 224463525 224463525 C T SCG2 Missense_Mutation p.R159K 0.24 tolerated(0.21) benign(0.094) TCGA-F4-6460-01 2 225342928 225342928 G C CUL3 Missense_Mutation p.L722V 0.33 tolerated(0.13) probably_damaging(1) TCGA-F4-6460-01 2 241395436 241395436 G A AC110619.2 Intron 0.55 TCGA-F4-6460-01 2 241922427 241922427 C T AC104809.2 RNA 0.33 TCGA-F4-6460-01 2 27529088 27529088 G A TRIM54 Missense_Mutation p.A334T 0.24 tolerated(0.15) benign(0.003) TCGA-F4-6460-01 2 31805895 31805895 C T SRD5A2 RNA 0.33 TCGA-F4-6460-01 2 56420036 56420036 C T CCDC85A Missense_Mutation p.P234L 0.57 tolerated(0.07) probably_damaging(0.999) TCGA-F4-6460-01 3 129120688 129120688 C T EFCAB12 Silent p.L489L 0.23 TCGA-F4-6460-01 3 137822764 137822764 C T DZIP1L Missense_Mutation p.G17E 0.28 tolerated(0.09) benign(0.124) TCGA-F4-6460-01 3 148793782 148793782 T C HLTF Missense_Mutation p.D94G 0.14 deleterious(0) probably_damaging(1) TCGA-F4-6460-01 3 180328327 180328327 T A TTC14 Missense_Mutation p.N770K 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-F4-6460-01 3 181430308 181430308 G A SOX2 Missense_Mutation p.G54R 0.09 deleterious(0) probably_damaging(0.995) TCGA-F4-6460-01 3 190147227 190147227 T G TMEM207 3'UTR 0.55 TCGA-F4-6460-01 3 45989745 45989745 G A CXCR6 3'Flank 0.68 TCGA-F4-6460-01 3 52545695 52545695 C T STAB1 Silent p.A939A 0.25 TCGA-F4-6460-01 3 57303658 57303658 C T APPL1 Silent p.S691S 0.20 TCGA-F4-6460-01 3 96706492 96706492 G T EPHA6 Missense_Mutation p.G257C 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6460-01 4 114277913 114277913 C T ANK2 Silent p.V2713V 0.38 TCGA-F4-6460-01 4 123192488 123192488 C T KIAA1109 Silent p.S2603S 0.44 TCGA-F4-6460-01 4 155219800 155219800 C T DCHS2 Missense_Mutation p.R1434H 0.09 deleterious(0.04) benign(0.086) TCGA-F4-6460-01 4 25677759 25677759 C T SLC34A2 Silent p.I487I 0.36 TCGA-F4-6460-01 4 46252249 46252249 A T GABRA2 3'UTR 0.21 TCGA-F4-6460-01 4 9889242 9889242 G T SLC2A9 Missense_Mutation p.L414M 0.41 deleterious(0.04) probably_damaging(0.997) TCGA-F4-6460-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.61 TCGA-F4-6460-01 5 140346906 140346906 C T PCDHAC2 Silent p.Y185Y 0.13 TCGA-F4-6460-01 5 140730218 140730218 G A PCDHGB1 Missense_Mutation p.V131I 0.28 tolerated(0.24) benign(0.001) TCGA-F4-6460-01 5 169680148 169680148 C T LCP2 Missense_Mutation p.R407Q 0.17 tolerated(0.94) benign(0.001) TCGA-F4-6460-01 5 178039862 178039862 C T CLK4 Missense_Mutation p.D286N 0.21 deleterious(0) probably_damaging(1) TCGA-F4-6460-01 5 54701272 54701272 C A SKIV2L2 Missense_Mutation p.S834Y 0.09 deleterious(0.02) benign(0.128) TCGA-F4-6460-01 6 101247331 101247331 T C ASCC3 Silent p.T415T 0.24 TCGA-F4-6460-01 6 1314428 1314431 TCTT - FOXQ1 3'UTR 0.16 TCGA-F4-6460-01 6 151687639 151687639 T A ZBTB2 Missense_Mutation p.N188Y 0.22 deleterious(0.04) benign(0.039) TCGA-F4-6460-01 6 152718066 152718066 G A SYNE1 Missense_Mutation p.T2467I 0.29 benign(0.044) TCGA-F4-6460-01 6 167754252 167754252 T A TTLL2 Missense_Mutation p.S288R 0.29 tolerated(0.28) benign(0.007) TCGA-F4-6460-01 6 24145874 24145874 C T NRSN1 Silent p.A96A 0.22 TCGA-F4-6460-01 6 26505391 26505391 T A BTN1A1 Missense_Mutation p.N222K 0.27 deleterious(0) probably_damaging(1) TCGA-F4-6460-01 6 38690904 38690904 C T DNAH8 5'UTR 0.19 TCGA-F4-6460-01 6 56489992 56489992 C T DST Missense_Mutation p.R1061Q 0.14 probably_damaging(0.913) TCGA-F4-6460-01 6 65301179 65301179 C T EYS Silent p.Q1527Q 0.14 TCGA-F4-6460-01 6 75839849 75839849 C T COL12A1 Silent p.R2056R 0.06 TCGA-F4-6460-01 6 76023381 76023381 C T FILIP1 Missense_Mutation p.E723K 0.19 deleterious(0) possibly_damaging(0.738) TCGA-F4-6460-01 6 76023535 76023535 C T FILIP1 Silent p.Q671Q 0.19 TCGA-F4-6460-01 6 79664655 79664655 C T PHIP Missense_Mutation p.R1310H 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-F4-6460-01 7 102915870 102915870 C A DPY19L2P2 RNA 0.15 TCGA-F4-6460-01 7 106924086 106924086 C A COG5 Missense_Mutation p.V500F 0.30 tolerated(0.05) benign(0.29) TCGA-F4-6460-01 7 149417990 149417990 G A KRBA1 Silent p.E73E 0.12 TCGA-F4-6460-01 7 4189094 4189094 A T SDK1 Nonsense_Mutation p.R1542* 0.14 TCGA-F4-6460-01 7 751037 751037 C T PRKAR1B Missense_Mutation p.V36I 0.33 tolerated(0.11) benign(0.146) TCGA-F4-6460-01 7 89900868 89900868 G A C7orf63 Silent p.K187K 0.08 TCGA-F4-6460-01 8 104513280 104513280 T C RIMS2 Missense_Mutation p.S56P 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.761) TCGA-F4-6460-01 8 104927767 104927767 T C RIMS2 Silent p.F619F 0.24 TCGA-F4-6460-01 8 121457505 121457505 G C MRPL13 5'UTR 0.25 TCGA-F4-6460-01 8 133142146 133142146 T A KCNQ3 Missense_Mutation p.K661M 0.12 deleterious(0.05) possibly_damaging(0.855) TCGA-F4-6460-01 8 134026001 134026001 G A TG Missense_Mutation p.R2185Q 0.35 deleterious(0.04) benign(0.073) TCGA-F4-6460-01 8 140630698 140630698 G A KCNK9 Missense_Mutation p.R310C 0.40 deleterious(0.03) benign(0.003) TCGA-F4-6460-01 8 146075883 146075883 T A COMMD5 3'UTR 0.36 TCGA-F4-6460-01 8 74526005 74526005 T A STAU2 Nonsense_Mutation p.K289* 0.44 TCGA-F4-6460-01 8 86572798 86572798 G C REXO1L1P 3'UTR 0.12 TCGA-F4-6460-01 8 88885719 88885719 C G DCAF4L2 Missense_Mutation p.A161P 0.18 deleterious(0.01) probably_damaging(0.955) TCGA-F4-6460-01 8 88885765 88885765 G T DCAF4L2 Nonsense_Mutation p.C145* 0.10 TCGA-F4-6460-01 8 95183170 95183170 T G CDH17 Missense_Mutation p.K276T 0.41 deleterious(0) probably_damaging(0.956) TCGA-F4-6460-01 9 107361347 107361347 G A OR13C5 Silent p.G116G 0.25 TCGA-F4-6460-01 9 119130027 119130027 G T PAPPA Silent p.R1533R 0.22 TCGA-F4-6460-01 9 136320513 136320513 C G ADAMTS13 Missense_Mutation p.P1119R 0.51 deleterious(0) probably_damaging(0.998) TCGA-F4-6460-01 9 37745528 37745528 G C FRMPD1 Missense_Mutation p.V1167L 0.30 tolerated_low_confidence(0.43) benign(0.003) TCGA-F4-6460-01 9 5185397 5185397 G A INSL6 Missense_Mutation p.S69L 0.09 tolerated(0.32) benign(0.002) TCGA-F4-6460-01 9 70177780 70177780 C T FOXD4L5 Silent p.A68A 0.12 TCGA-F4-6460-01 9 71478790 71478790 G C PIP5K1B Missense_Mutation p.G36A 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-F4-6460-01 9 77436694 77436694 G T TRPM6 Missense_Mutation p.L301M 0.29 tolerated(0.07) possibly_damaging(0.808) TCGA-F4-6460-01 X 122538637 122538637 C G GRIA3 Missense_Mutation p.L458V 0.14 deleterious(0) possibly_damaging(0.852) TCGA-F4-6460-01 X 125299408 125299408 C A DCAF12L2 Missense_Mutation p.G167V 0.32 deleterious(0) probably_damaging(0.992) TCGA-F4-6460-01 X 134167432 134167432 G A FAM127A 3'UTR 0.16 TCGA-F4-6460-01 X 135741648 135741648 C A CD40LG 3'UTR 0.55 TCGA-F4-6460-01 X 142717803 142717803 C T SLITRK4 Silent p.P374P 0.15 TCGA-F4-6460-01 X 153689488 153689488 C T PLXNA3 Missense_Mutation p.T215M 0.11 deleterious(0) probably_damaging(1) TCGA-F4-6460-01 X 70828876 70828876 A T ACRC Missense_Mutation p.K507M 0.16 unknown(0) TCGA-F4-6460-01 X 73962383 73962383 C T KIAA2022 Missense_Mutation p.G670D 0.26 deleterious(0.03) benign(0.134) TCGA-F4-6460-01 X 79938009 79938009 C A BRWD3 Missense_Mutation p.R1451L 0.26 deleterious(0) probably_damaging(0.995) TCGA-F4-6460-01 X 79975052 79975052 C A BRWD3 Silent p.L660L 0.25 TCGA-F4-6461-01 10 102748562 102748562 C T C10orf2 Nonsense_Mutation p.R199* 0.35 TCGA-F4-6461-01 10 105037980 105037980 A G INA Missense_Mutation p.R338G 0.11 deleterious(0) probably_damaging(0.978) TCGA-F4-6461-01 10 107023219 107023220 - T SORCS3 3'UTR 0.20 TCGA-F4-6461-01 10 43883038 43883038 G A HNRNPF Missense_Mutation p.H99Y 0.35 deleterious(0.01) benign(0.02) TCGA-F4-6461-01 11 18737205 18737205 G A IGSF22 Silent p.R435R 0.29 TCGA-F4-6461-01 11 2320704 2320704 C T C11orf21 Nonsense_Mutation p.W173* 0.33 TCGA-F4-6461-01 11 36248637 36248637 C A LDLRAD3 Missense_Mutation p.P153T 0.21 tolerated(0.33) benign(0.005) TCGA-F4-6461-01 11 5443808 5443808 G A OR51Q1 Silent p.V126V 0.27 TCGA-F4-6461-01 11 550071 550071 G T LRRC56 Splice_Site p.X142_splice 0.27 TCGA-F4-6461-01 11 66311228 66311228 G A ZDHHC24 Missense_Mutation p.T169M 0.21 tolerated(0.24) benign(0.231) TCGA-F4-6461-01 11 7110571 7110571 C T RBMXL2 Silent p.L74L 0.40 TCGA-F4-6461-01 11 89133234 89133234 T C NOX4 Missense_Mutation p.H342R 0.29 tolerated(0.28) benign(0.049) TCGA-F4-6461-01 11 985532 985532 G A AP2A2 Silent p.A304A 0.22 TCGA-F4-6461-01 12 100657328 100657328 G A DEPDC4 Silent p.Y167Y 0.31 TCGA-F4-6461-01 12 102796173 102796173 A C IGF1 3'UTR 0.22 TCGA-F4-6461-01 12 106461002 106461002 T C NUAK1 Missense_Mutation p.K522E 0.10 deleterious(0) probably_damaging(0.993) TCGA-F4-6461-01 12 106897881 106897881 C T POLR3B Missense_Mutation p.R1041C 0.08 deleterious(0) probably_damaging(0.997) TCGA-F4-6461-01 12 11244795 11244795 G C TAS2R43 Missense_Mutation p.L12V 0.12 deleterious(0.04) benign(0.067) TCGA-F4-6461-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.47 deleterious(0) benign(0.361) TCGA-F4-6461-01 12 51189734 51189734 G A ATF1 Missense_Mutation p.D46N 0.33 deleterious(0) probably_damaging(0.997) TCGA-F4-6461-01 12 52841757 52841757 G A KRT6B Missense_Mutation p.A410V 0.17 deleterious(0.03) probably_damaging(0.934) TCGA-F4-6461-01 12 53189250 53189250 G T KRT3 Missense_Mutation p.Q193K 0.31 tolerated(0.95) possibly_damaging(0.717) TCGA-F4-6461-01 12 53585766 53585766 G A ITGB7 Silent p.C731C 0.39 TCGA-F4-6461-01 12 53873532 53873532 G A PCBP2 3'UTR 0.23 TCGA-F4-6461-01 12 57112114 57112114 G C NACA Intron 0.41 TCGA-F4-6461-01 12 57389643 57389643 C T GPR182 Missense_Mutation p.A217V 0.41 tolerated(0.47) benign(0.02) TCGA-F4-6461-01 12 57390278 57390278 G A GPR182 3'UTR 0.39 TCGA-F4-6461-01 12 95927513 95927513 T A USP44 Nonsense_Mutation p.K174* 0.28 TCGA-F4-6461-01 13 33096363 33096363 T C N4BP2L2 Missense_Mutation p.N48D 0.25 deleterious(0) probably_damaging(0.999) TCGA-F4-6461-01 13 33635046 33635046 G A KL Silent p.Q610Q 0.30 TCGA-F4-6461-01 14 21269606 21269606 C T RNASE1 3'UTR 0.44 TCGA-F4-6461-01 14 29237143 29237143 G A FOXG1 Missense_Mutation p.E220K 0.30 deleterious(0.02) possibly_damaging(0.896) TCGA-F4-6461-01 14 65544747 65544747 C T MAX Missense_Mutation p.R60Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-F4-6461-01 14 71556000 71556000 A G PCNX Missense_Mutation p.M1844V 0.12 deleterious(0.04) probably_damaging(0.992) TCGA-F4-6461-01 14 74009894 74009894 C T ACOT1 Silent p.Y267Y 0.07 TCGA-F4-6461-01 14 86093962 86093962 A T FLRT2 3'UTR 0.35 TCGA-F4-6461-01 15 23811299 23811299 C T MKRN3 Missense_Mutation p.R124W 0.22 tolerated(0.16) benign(0.013) TCGA-F4-6461-01 15 43569091 43569091 T C TGM7 Missense_Mutation p.S648G 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-F4-6461-01 15 45847803 45847803 G A RP11-96O20.2 5'Flank 0.31 TCGA-F4-6461-01 15 48537061 48537061 G A SLC12A1 Missense_Mutation p.R471Q 0.27 tolerated(1) benign(0.002) TCGA-F4-6461-01 15 59910458 59910458 C T GCNT3 Silent p.L7L 0.35 TCGA-F4-6461-01 15 65490566 65490566 C A CILP Missense_Mutation p.Q686H 0.32 tolerated(0.2) probably_damaging(0.993) TCGA-F4-6461-01 15 72193621 72193621 G A MYO9A Missense_Mutation p.R1021C 0.35 deleterious(0.01) benign(0.069) TCGA-F4-6461-01 16 20380861 20380861 C T PDILT Missense_Mutation p.E357K 0.40 tolerated(0.21) benign(0.024) TCGA-F4-6461-01 16 31091398 31091398 C T ZNF646 Silent p.I1251I 0.39 TCGA-F4-6461-01 16 31284710 31284710 C T ITGAM Silent p.N243N 0.37 TCGA-F4-6461-01 16 49671085 49671085 G A ZNF423 Missense_Mutation p.R660W 0.17 deleterious(0.04) possibly_damaging(0.889) TCGA-F4-6461-01 16 71209591 71209591 G C HYDIN Missense_Mutation p.I145M 0.20 benign(0.221) TCGA-F4-6461-01 16 737183 737183 T C WDR24 Missense_Mutation p.D298G 0.13 deleterious(0.02) possibly_damaging(0.841) TCGA-F4-6461-01 16 75140384 75140384 A G ZNRF1 Missense_Mutation p.I211V 0.15 deleterious(0.02) possibly_damaging(0.756) TCGA-F4-6461-01 16 81190547 81190547 C T PKD1L2 RNA 0.34 TCGA-F4-6461-01 17 1537953 1537953 G A SCARF1 3'UTR 0.23 TCGA-F4-6461-01 17 26946710 26946710 G A KIAA0100 Silent p.N1868N 0.24 TCGA-F4-6461-01 17 27945951 27945951 C T CORO6 Missense_Mutation p.G164R 0.29 deleterious(0) probably_damaging(0.991) TCGA-F4-6461-01 17 36642352 36642352 G A ARHGAP23 Missense_Mutation p.R986Q 0.29 deleterious(0) probably_damaging(1) TCGA-F4-6461-01 17 36864101 36864101 C T MLLT6 Silent p.Y110Y 0.32 TCGA-F4-6461-01 17 36977311 36977311 A G CWC25 Missense_Mutation p.W12R 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6461-01 17 44144025 44144025 G A KANSL1 Nonsense_Mutation p.R576* 0.22 TCGA-F4-6461-01 17 45681252 45681252 T A NPEPPS Intron 0.26 TCGA-F4-6461-01 17 7637892 7637892 C T DNAH2 Missense_Mutation p.R282C 0.13 possibly_damaging(0.67) TCGA-F4-6461-01 17 76851788 76851788 C T TIMP2 Silent p.A208A 0.28 TCGA-F4-6461-01 18 43432373 43432373 A G EPG5 3'UTR 0.12 TCGA-F4-6461-01 18 47563269 47563269 C G MYO5B Missense_Mutation p.D136H 0.34 deleterious(0) probably_damaging(0.998) TCGA-F4-6461-01 19 11560159 11560159 A C PRKCSH Missense_Mutation p.M507L 0.31 tolerated(0.23) benign(0.034) TCGA-F4-6461-01 19 12502563 12542338 19:12502563-12542338 - ZNF799 large deletion 0.23 TCGA-F4-6461-01 19 15739182 15739182 C T CYP4F8 RNA 0.09 TCGA-F4-6461-01 19 21910252 21910252 G T ZNF100 Missense_Mutation p.P288T 0.35 deleterious(0.01) possibly_damaging(0.906) TCGA-F4-6461-01 19 21926824 21926824 G A ZNF100 Missense_Mutation p.P106L 0.13 tolerated(0.08) probably_damaging(0.929) TCGA-F4-6461-01 19 2207633 2207633 C T DOT1L Missense_Mutation p.T306M 0.27 deleterious(0) probably_damaging(0.987) TCGA-F4-6461-01 19 36004300 36004300 G A DMKN Silent p.S26S 0.40 TCGA-F4-6461-01 19 40328470 40328470 T C FBL Missense_Mutation p.Y188C 0.40 deleterious(0.02) probably_damaging(0.987) TCGA-F4-6461-01 19 46973631 46973631 G A PNMAL1 Missense_Mutation p.T221M 0.23 tolerated(0.69) benign(0.07) TCGA-F4-6461-01 19 51645712 51645712 C T SIGLEC7 Missense_Mutation p.T29M 0.32 tolerated(0.11) benign(0.023) TCGA-F4-6461-01 19 56424201 56424201 C A NLRP13 Missense_Mutation p.D328Y 0.28 deleterious(0.02) possibly_damaging(0.651) TCGA-F4-6461-01 19 57869197 57869197 G T ZNF304 Missense_Mutation p.A654S 0.17 tolerated(0.77) benign(0.108) TCGA-F4-6461-01 19 8197949 8197949 C T FBN3 Missense_Mutation p.V545M 0.28 tolerated(1) benign(0.025) TCGA-F4-6461-01 19 8996467 8996467 C T MUC16 Missense_Mutation p.G13702E 0.26 possibly_damaging(0.907) TCGA-F4-6461-01 1 112299330 112299330 G A DDX20 Missense_Mutation p.D122N 0.23 deleterious(0) probably_damaging(0.994) TCGA-F4-6461-01 1 11345794 11345794 G A UBIAD1 Missense_Mutation p.G208E 0.35 deleterious(0) probably_damaging(0.909) TCGA-F4-6461-01 1 148024847 148024847 G A NBPF14 Silent p.A56A 0.11 TCGA-F4-6461-01 1 156811998 156811998 G A INSRR Silent p.D1101D 0.32 TCGA-F4-6461-01 1 158650396 158650396 G T SPTA1 Missense_Mutation p.Q219K 0.31 tolerated(0.29) benign(0.02) TCGA-F4-6461-01 1 182491152 182491152 A C RGSL1 Missense_Mutation p.E613D 0.33 tolerated(0.08) benign(0.298) TCGA-F4-6461-01 1 193094309 193094309 G A CDC73 Missense_Mutation p.V67M 0.20 deleterious(0.02) probably_damaging(0.96) TCGA-F4-6461-01 1 201982163 201982164 - G ELF3 Frame_Shift_Ins 0.25 TCGA-F4-6461-01 1 206652411 206652411 C T IKBKE Missense_Mutation p.T373M 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-F4-6461-01 1 215847612 215847612 C A USH2A Missense_Mutation p.E4547D 0.28 benign(0.049) TCGA-F4-6461-01 1 228475396 228475396 G A OBSCN Silent p.A3611A 0.21 TCGA-F4-6461-01 1 27272107 27272107 T C NUDC Missense_Mutation p.Y292H 0.08 deleterious(0.02) probably_damaging(0.913) TCGA-F4-6461-01 1 44878179 44878179 C T RNF220 Missense_Mutation p.T137M 0.31 deleterious(0.01) possibly_damaging(0.707) TCGA-F4-6461-01 1 47582394 47582394 G A CYP4Z1 Missense_Mutation p.A447T 0.28 deleterious(0.02) benign(0.099) TCGA-F4-6461-01 1 64707375 64707375 G T UBE2U Missense_Mutation p.W212C 0.29 deleterious(0) possibly_damaging(0.907) TCGA-F4-6461-01 1 914583 914583 G A C1orf170 Silent p.G515G 0.31 TCGA-F4-6461-01 1 98144730 98144730 G A DPYD Silent p.C257C 0.34 TCGA-F4-6461-01 20 18574416 18574416 G C DTD1 Missense_Mutation p.V29L 0.28 deleterious(0) possibly_damaging(0.626) TCGA-F4-6461-01 20 21126295 21126295 G A RP5-872K7.7 3'Flank 0.33 TCGA-F4-6461-01 20 30053382 30053382 C T DEFB124 Missense_Mutation p.C48Y 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F4-6461-01 20 30784683 30784683 G A PLAGL2 Missense_Mutation p.P355S 0.24 tolerated(0.7) probably_damaging(0.968) TCGA-F4-6461-01 20 45174303 45174303 A G OCSTAMP Missense_Mutation p.L237P 0.10 deleterious(0) probably_damaging(0.99) TCGA-F4-6461-01 20 48503297 48503297 T C SLC9A8 Silent p.T516T 0.13 TCGA-F4-6461-01 20 57429289 57429289 C A GNAS Silent p.V323V 0.18 TCGA-F4-6461-01 21 45649804 45649804 G A ICOSLG Intron 0.29 TCGA-F4-6461-01 21 46309925 46309925 T C ITGB2 Missense_Mutation p.E542G 0.10 deleterious(0) probably_damaging(0.976) TCGA-F4-6461-01 2 10199050 10199050 G A CYS1 Missense_Mutation p.P136L 0.49 tolerated(0.12) possibly_damaging(0.859) TCGA-F4-6461-01 2 128342389 128342389 G A MYO7B Missense_Mutation p.V531I 0.40 tolerated(0.39) benign(0.062) TCGA-F4-6461-01 2 166773791 166773791 G A TTC21B Silent p.D625D 0.26 TCGA-F4-6461-01 2 168115208 168115208 C T XIRP2 3'UTR 0.28 TCGA-F4-6461-01 2 178416955 178416955 G A TTC30B Silent p.A179A 0.29 TCGA-F4-6461-01 2 179398409 179398409 T G TTN Silent p.S34311S 0.31 TCGA-F4-6461-01 2 183032840 183032840 A C PDE1A Intron 0.35 TCGA-F4-6461-01 2 190603410 190603410 T C ANKAR Splice_Site p.X1234_splice 0.36 TCGA-F4-6461-01 2 207516418 207516418 A T DYTN 3'UTR 0.29 TCGA-F4-6461-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-F4-6461-01 2 209309571 209309571 C T PTH2R Missense_Mutation p.S271L 0.32 deleterious(0.02) probably_damaging(0.961) TCGA-F4-6461-01 2 231177517 231177517 T C SP140 3'UTR 0.22 TCGA-F4-6461-01 2 233244647 233244647 G A ALPP Splice_Site p.X219_splice 0.33 TCGA-F4-6461-01 2 28815535 28815535 C A PLB1 Silent p.A732A 0.11 TCGA-F4-6461-01 2 73613101 73613101 G A ALMS1 Silent p.A35A 0.36 TCGA-F4-6461-01 2 88828583 88828583 A G TEX37 Missense_Mutation p.D45G 0.23 deleterious_low_confidence(0.02) benign(0.009) TCGA-F4-6461-01 2 98349432 98349432 A T ZAP70 Missense_Mutation p.K217M 0.27 deleterious(0) probably_damaging(0.955) TCGA-F4-6461-01 3 112643356 112643356 G T CD200R1 Missense_Mutation p.S302Y 0.23 deleterious(0.05) benign(0.367) TCGA-F4-6461-01 3 122821313 122821313 G A PDIA5 Missense_Mutation p.D105N 0.36 tolerated(0.34) benign(0.269) TCGA-F4-6461-01 3 129252554 129252554 C T RHO Missense_Mutation p.P347L 0.22 deleterious(0) probably_damaging(0.977) TCGA-F4-6461-01 3 150931427 150931427 C T P2RY14 Silent p.S226S 0.31 TCGA-F4-6461-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.31 tolerated(0.36) benign(0.4) TCGA-F4-6461-01 3 196054338 196054338 C A TM4SF19 Missense_Mutation p.D42Y 0.08 deleterious(0.01) probably_damaging(0.975) TCGA-F4-6461-01 3 196210691 196210691 C T RNF168 Silent p.K210K 0.27 TCGA-F4-6461-01 3 42251356 42251356 G A TRAK1 Silent p.T614T 0.35 TCGA-F4-6461-01 3 49693153 49693153 C T BSN Missense_Mutation p.P2055L 0.22 unknown(0) TCGA-F4-6461-01 4 102751332 102751332 C T BANK1 Silent p.Y146Y 0.20 TCGA-F4-6461-01 4 128665872 128665872 A G SLC25A31 Missense_Mutation p.Y93C 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-F4-6461-01 4 129783054 129783054 C T JADE1 Missense_Mutation p.P393S 0.18 tolerated(0.41) benign(0.035) TCGA-F4-6461-01 4 155491853 155491853 A T FGB 3'UTR 0.28 TCGA-F4-6461-01 4 164087531 164087531 C G NAF1 Missense_Mutation p.D117H 0.18 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-F4-6461-01 4 17623289 17623289 A T MED28 Missense_Mutation p.L102F 0.25 deleterious(0.01) probably_damaging(0.952) TCGA-F4-6461-01 4 56435929 56435929 A G PDCL2 Silent p.N106N 0.28 TCGA-F4-6461-01 4 76817488 76817488 G A PPEF2 5'UTR 0.35 TCGA-F4-6461-01 4 86997 86997 C T Z95704.2 RNA 0.30 TCGA-F4-6461-01 4 87724972 87724972 G T PTPN13 Missense_Mutation p.G2211C 0.32 deleterious(0) probably_damaging(0.996) TCGA-F4-6461-01 5 112174119 112174119 C A APC Nonsense_Mutation p.S943* 0.27 TCGA-F4-6461-01 5 112175576 112175576 C T APC Nonsense_Mutation p.Q1429* 0.22 TCGA-F4-6461-01 5 115628183 115628183 A G COMMD10 Silent p.T202T 0.25 TCGA-F4-6461-01 5 140176666 140176666 C T PCDHA2 Missense_Mutation p.A706V 0.35 deleterious_low_confidence(0.02) benign(0.055) TCGA-F4-6461-01 5 140209489 140209489 G A PCDHA6 Missense_Mutation p.A605T 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.745) TCGA-F4-6461-01 5 140724161 140724161 G A PCDHGA3 Silent p.E187E 0.29 TCGA-F4-6461-01 5 153144076 153144076 G A GRIA1 Missense_Mutation p.A646T 0.33 deleterious(0) probably_damaging(1) TCGA-F4-6461-01 5 38258820 38258820 C T EGFLAM 5'UTR 0.39 TCGA-F4-6461-01 5 86685295 86685295 C T RASA1 Missense_Mutation p.A1004V 0.16 tolerated(0.23) benign(0.013) TCGA-F4-6461-01 6 102376335 102376335 G A GRIK2 Missense_Mutation p.G638D 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6461-01 6 111694418 111694418 A T REV3L Missense_Mutation p.S1714T 0.25 tolerated_low_confidence(0.64) benign(0.004) TCGA-F4-6461-01 6 130454687 130454687 G A L3MBTL3 Missense_Mutation p.R686H 0.33 deleterious(0.03) benign(0.313) TCGA-F4-6461-01 6 139238736 139238737 AA - REPS1 Frame_Shift_Del p.F518Yfs*3 0.16 TCGA-F4-6461-01 6 158902182 158902182 C T TULP4 Silent p.D449D 0.40 TCGA-F4-6461-01 6 27100450 27100450 C A HIST1H2BJ Missense_Mutation p.G27V 0.10 deleterious_low_confidence(0) unknown(0) TCGA-F4-6461-01 6 28228213 28228213 G A NKAPL Missense_Mutation p.R355H 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-F4-6461-01 6 311891 311891 G A DUSP22 Missense_Mutation p.A23T 0.15 tolerated(0.66) benign(0.003) TCGA-F4-6461-01 6 31931889 31931889 G A SKIV2L Missense_Mutation p.R616H 0.48 deleterious(0) probably_damaging(0.947) TCGA-F4-6461-01 6 38828320 38828320 G T DNAH8 Missense_Mutation p.V1799L 0.30 possibly_damaging(0.53) TCGA-F4-6461-01 6 52369478 52369478 T C TRAM2 Missense_Mutation p.H317R 0.30 tolerated(1) benign(0) TCGA-F4-6461-01 6 52849383 52849383 C T GSTA4 Missense_Mutation p.G98E 0.35 deleterious(0) probably_damaging(0.991) TCGA-F4-6461-01 6 96658113 96658113 G A FUT9 3'UTR 0.34 TCGA-F4-6461-01 7 100189403 100189403 G A FBXO24 Missense_Mutation p.V184I 0.31 tolerated_low_confidence(0.18) benign(0) TCGA-F4-6461-01 7 100377208 100377208 G A ZAN Missense_Mutation p.C2152Y 0.35 unknown(0) TCGA-F4-6461-01 7 101845140 101845140 G A CUX1 Missense_Mutation p.G866S 0.18 tolerated(0.76) unknown(0) TCGA-F4-6461-01 7 123264647 123264647 T C ASB15 Missense_Mutation p.M159T 0.19 deleterious(0.03) benign(0.038) TCGA-F4-6461-01 7 143085653 143085653 C T ZYX Missense_Mutation p.H406Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-F4-6461-01 7 150935141 150935141 G A CHPF2 Missense_Mutation p.A565T 0.29 deleterious(0) benign(0.174) TCGA-F4-6461-01 7 30702336 30702336 T C CRHR2 Missense_Mutation p.K251R 0.08 tolerated(0.42) possibly_damaging(0.898) TCGA-F4-6461-01 7 56146188 56146188 C T SUMF2 Intron 0.38 TCGA-F4-6461-01 7 86539165 86539165 T C KIAA1324L Silent p.L774L 0.26 TCGA-F4-6461-01 8 116616565 116616565 C T TRPS1 Missense_Mutation p.R544Q 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F4-6461-01 8 146156926 146156926 C T ZNF16 Missense_Mutation p.R416Q 0.27 tolerated(0.64) benign(0.033) TCGA-F4-6461-01 8 27918104 27918104 G T NUGGC Nonsense_Mutation p.C312* 0.36 TCGA-F4-6461-01 8 88886057 88886057 T C DCAF4L2 Missense_Mutation p.E48G 0.29 deleterious(0) probably_damaging(1) TCGA-F4-6461-01 8 94713596 94713596 G A FAM92A1 Silent p.A57A 0.34 TCGA-F4-6461-01 9 107457526 107457526 C T OR13D1 Missense_Mutation p.A275V 0.30 deleterious(0) possibly_damaging(0.899) TCGA-F4-6461-01 9 116856533 116856533 G A KIF12 Missense_Mutation p.A276V 0.28 deleterious(0.01) benign(0.158) TCGA-F4-6461-01 9 139889739 139889739 G A CLIC3 Missense_Mutation p.P92L 0.24 tolerated(0.13) probably_damaging(0.964) TCGA-F4-6461-01 9 21410078 21410078 A C IFNA8 3'UTR 0.34 TCGA-F4-6461-01 9 94171897 94171897 C T NFIL3 Missense_Mutation p.V374I 0.32 tolerated(0.59) benign(0.026) TCGA-F4-6461-01 X 105197043 105197043 C T NRK Nonsense_Mutation p.R1512* 0.24 TCGA-F4-6461-01 X 119425155 119425155 G A TMEM255A Missense_Mutation p.A102V 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-F4-6461-01 X 123805532 123805532 C T TENM1 Splice_Site p.X390_splice 0.33 TCGA-F4-6461-01 X 128927702 128927702 C T SASH3 Missense_Mutation p.P346L 0.31 deleterious(0) probably_damaging(0.997) TCGA-F4-6461-01 X 12904514 12904514 G A TLR7 Missense_Mutation p.R296H 0.24 tolerated(0.08) benign(0.262) TCGA-F4-6461-01 X 134994968 134994968 T G SAGE1 Missense_Mutation p.V876G 0.26 tolerated(0.34) possibly_damaging(0.592) TCGA-F4-6461-01 X 152612442 152612442 A G ZNF275 Missense_Mutation p.H100R 0.26 tolerated(0.33) possibly_damaging(0.719) TCGA-F4-6461-01 X 153649044 153649044 C A TAZ Silent p.L249L 0.26 TCGA-F4-6461-01 X 153735152 153735152 G A FAM3A Missense_Mutation p.T228M 0.22 tolerated_low_confidence(0.14) benign(0.004) TCGA-F4-6461-01 X 17764171 17764171 A G SCML1 Missense_Mutation p.T51A 0.31 tolerated(0.75) benign(0.037) TCGA-F4-6461-01 X 37027156 37027156 C G FAM47C Missense_Mutation p.Q225E 0.26 tolerated(1) benign(0) TCGA-F4-6461-01 X 39934184 39934184 C T BCOR Missense_Mutation p.G139R 0.46 tolerated(0.83) benign(0.228) TCGA-F4-6461-01 X 48776079 48776079 C T PIM2 Silent p.A11A 0.30 TCGA-F4-6461-01 X 48826035 48826035 C T KCND1 Missense_Mutation p.R215H 0.43 tolerated(0.25) benign(0.046) TCGA-F4-6461-01 X 54955799 54955799 G C TRO Missense_Mutation p.S881T 0.34 deleterious(0) possibly_damaging(0.483) TCGA-F4-6461-01 X 79964984 79964984 A T BRWD3 Missense_Mutation p.N806K 0.18 tolerated(0.86) benign(0.004) TCGA-F4-6461-01 X 96139277 96139277 C T RPA4 5'UTR 0.12 TCGA-F4-6463-01 10 50818946 50818946 G A SLC18A3 Missense_Mutation p.V54M 0.23 deleterious(0) probably_damaging(1) TCGA-F4-6463-01 10 75394302 75394302 C T MYOZ1 Missense_Mutation p.A148T 0.30 tolerated(0.18) benign(0.016) TCGA-F4-6463-01 10 75550762 75550762 C T ZSWIM8 Missense_Mutation p.T324M 0.39 deleterious(0) probably_damaging(0.989) TCGA-F4-6463-01 11 5530651 5530651 C A UBQLN3 Silent p.L46L 0.29 TCGA-F4-6463-01 11 55944300 55944300 G A OR5J2 Silent p.V69V 0.12 TCGA-F4-6463-01 11 56114045 56114058 AAACATAATCAGCT - OR8K1 Frame_Shift_Del p.N178Ffs*4 0.23 TCGA-F4-6463-01 11 61205284 61205285 - A SDHAF2 Frame_Shift_Ins p.R77Efs*11 0.12 TCGA-F4-6463-01 11 6550238 6550238 C T DNHD1 Missense_Mutation p.T745M 0.24 benign(0.003) TCGA-F4-6463-01 11 6662406 6662406 G A DCHS1 Missense_Mutation p.R147W 0.30 deleterious(0) possibly_damaging(0.556) TCGA-F4-6463-01 11 92623781 92623781 C T FAT3 Silent p.S4424S 0.22 TCGA-F4-6463-01 12 123201098 123201098 G A HCAR3 Missense_Mutation p.R63W 0.42 deleterious(0.02) benign(0.298) TCGA-F4-6463-01 12 132632298 132632298 G A NOC4L Missense_Mutation p.V192M 0.17 tolerated(0.06) benign(0.021) TCGA-F4-6463-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.50 deleterious(0.03) possibly_damaging(0.876) TCGA-F4-6463-01 12 49416114 49416114 C T KMT2D Missense_Mutation p.R5454Q 0.19 unknown(0) TCGA-F4-6463-01 12 57598954 57598954 C T LRP1 Missense_Mutation p.R3753C 0.27 possibly_damaging(0.863) TCGA-F4-6463-01 12 939311 939311 C T WNK1 Silent p.Y432Y 0.28 TCGA-F4-6463-01 13 41508128 41508128 C T ELF1 Silent p.V431V 0.08 TCGA-F4-6463-01 14 100615308 100615308 C T DEGS2 Silent p.P274P 0.23 TCGA-F4-6463-01 15 33026691 33026692 - TTA GREM1 3'UTR 0.18 TCGA-F4-6463-01 15 48444464 48444464 G A MYEF2 Missense_Mutation p.P369S 0.07 tolerated(0.36) possibly_damaging(0.549) TCGA-F4-6463-01 15 54919114 54919114 G A UNC13C Missense_Mutation p.G2150R 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-F4-6463-01 15 91328183 91328183 C T BLM Nonsense_Mutation p.R899* 0.27 TCGA-F4-6463-01 16 1997047 1997047 G A RPL3L Silent p.G247G 0.27 TCGA-F4-6463-01 16 70566471 70566471 G A SF3B3 Silent p.V220V 0.07 TCGA-F4-6463-01 16 81944258 81944258 C T PLCG2 Missense_Mutation p.R623C 0.25 deleterious(0) probably_damaging(0.999) TCGA-F4-6463-01 17 10214486 10214486 C T MYH13 Silent p.A1530A 0.27 TCGA-F4-6463-01 17 10441034 10441034 G A MYH2 Missense_Mutation p.T512M 0.26 tolerated(0.08) benign(0.381) TCGA-F4-6463-01 17 40369449 40369449 G A STAT5B Silent p.C401C 0.22 TCGA-F4-6463-01 17 44172068 44172068 C T KANSL1 Splice_Site p.X430_splice 0.19 TCGA-F4-6463-01 17 4575472 4575472 T A PELP1 Missense_Mutation p.E938D 0.27 unknown(0) TCGA-F4-6463-01 17 61898803 61898803 C T FTSJ3 Silent p.S599S 0.31 TCGA-F4-6463-01 17 7556806 7556806 G A ATP1B2 Missense_Mutation p.R76Q 0.27 tolerated(0.43) benign(0.219) TCGA-F4-6463-01 19 12849349 12849349 C A ASNA1 Silent p.S62S 0.30 TCGA-F4-6463-01 19 1360269 1360269 C T MUM1 Missense_Mutation p.R118W 0.32 tolerated(0.06) benign(0.409) TCGA-F4-6463-01 19 1978706 1978706 G T CSNK1G2 Missense_Mutation p.R135L 0.36 deleterious(0) probably_damaging(0.974) TCGA-F4-6463-01 19 3534809 3534809 T A FZR1 Missense_Mutation p.L489H 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6463-01 19 36278558 36278558 G A ARHGAP33 Missense_Mutation p.G870S 0.17 tolerated_low_confidence(0.21) possibly_damaging(0.498) TCGA-F4-6463-01 19 40886969 40886969 G A HIPK4 Missense_Mutation p.A310V 0.22 tolerated(0.37) benign(0.01) TCGA-F4-6463-01 19 45851256 45851256 G A KLC3 Missense_Mutation p.R206H 0.21 deleterious(0.04) possibly_damaging(0.605) TCGA-F4-6463-01 19 54963326 54963326 C T LENG8 Missense_Mutation p.P32L 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-F4-6463-01 19 7975970 7975970 G A MAP2K7 Missense_Mutation p.D261N 0.06 deleterious(0) probably_damaging(1) TCGA-F4-6463-01 19 9063158 9063158 C T MUC16 Silent p.T8096T 0.30 TCGA-F4-6463-01 1 151338150 151338150 G A SELENBP1 Silent p.T311T 0.30 TCGA-F4-6463-01 1 201844293 201844293 C T IPO9 Silent p.Y984Y 0.26 TCGA-F4-6463-01 1 25773369 25773369 A G TMEM57 Missense_Mutation p.Y66C 0.30 deleterious(0) benign(0.199) TCGA-F4-6463-01 1 34076807 34076807 G A CSMD2 Silent p.H2019H 0.31 TCGA-F4-6463-01 1 50666870 50666870 T A ELAVL4 3'UTR 0.09 TCGA-F4-6463-01 1 6189118 6189118 G A CHD5 Silent p.R1133R 0.26 TCGA-F4-6463-01 1 74819672 74819672 T A FPGT-TNNI3K Missense_Mutation p.S460T 0.24 deleterious(0.04) benign(0.298) TCGA-F4-6463-01 20 18131507 18131508 - GAC CSRP2BP In_Frame_Ins p.R142dup 0.26 TCGA-F4-6463-01 20 20177277 20177277 C T C20orf26 Missense_Mutation p.R552C 0.28 deleterious(0.01) probably_damaging(0.972) TCGA-F4-6463-01 20 39990418 39990418 C T EMILIN3 Silent p.S597S 0.20 TCGA-F4-6463-01 20 6031588 6031588 G A LRRN4 Missense_Mutation p.L233F 0.25 deleterious(0.04) probably_damaging(0.93) TCGA-F4-6463-01 20 60733801 60733801 C T SS18L1 Missense_Mutation p.T48M 0.27 deleterious(0.04) probably_damaging(0.982) TCGA-F4-6463-01 21 31874370 31874370 G A KRTAP19-5 Silent p.Y13Y 0.28 TCGA-F4-6463-01 21 44323721 44323721 G A NDUFV3 Missense_Mutation p.R200Q 0.23 tolerated(0.41) benign(0.001) TCGA-F4-6463-01 22 39358187 39358187 C T APOBEC3A Missense_Mutation p.A185V 0.31 tolerated(0.29) probably_damaging(0.926) TCGA-F4-6463-01 2 120125285 120125285 G A DBI Intron 0.28 TCGA-F4-6463-01 2 166894639 166894639 G A SCN1A Nonsense_Mutation p.R865* 0.22 TCGA-F4-6463-01 2 179575932 179575935 CTGT - TTN Frame_Shift_Del p.D9343Afs*9 0.31 TCGA-F4-6463-01 2 212989616 212989616 G A ERBB4 Missense_Mutation p.T32M 0.29 tolerated(0.05) possibly_damaging(0.812) TCGA-F4-6463-01 2 241702480 241702480 G A KIF1A Missense_Mutation p.R660C 0.29 deleterious(0) possibly_damaging(0.858) TCGA-F4-6463-01 2 39285920 39285920 T C SOS1 Missense_Mutation p.H80R 0.28 tolerated(0.2) benign(0.043) TCGA-F4-6463-01 3 101401331 101401331 G A RPL24 Missense_Mutation p.A112V 0.27 tolerated(0.06) benign(0.093) TCGA-F4-6463-01 3 185241941 185241941 G T LIPH Silent p.G212G 0.07 TCGA-F4-6463-01 4 2083463 2083463 C T POLN Silent p.V735V 0.35 TCGA-F4-6463-01 4 2965841 2965841 C T GRK4 Missense_Mutation p.A15V 0.07 deleterious(0) possibly_damaging(0.794) TCGA-F4-6463-01 4 5016903 5016903 G A CYTL1 Missense_Mutation p.T129M 0.33 deleterious_low_confidence(0.05) benign(0.218) TCGA-F4-6463-01 4 6863960 6863960 C G KIAA0232 Missense_Mutation p.I617M 0.30 deleterious(0.03) benign(0.298) TCGA-F4-6463-01 5 112175760 112175761 - T APC Frame_Shift_Ins p.A1492Cfs*22 0.19 TCGA-F4-6463-01 5 132270012 132270012 T C AFF4 Missense_Mutation p.M249V 0.30 tolerated(1) possibly_damaging(0.556) TCGA-F4-6463-01 5 140182605 140182605 C T PCDHA3 Missense_Mutation p.S608L 0.29 tolerated_low_confidence(0.05) benign(0.358) TCGA-F4-6463-01 5 140228251 140228251 G A PCDHA9 Silent p.A57A 0.31 TCGA-F4-6463-01 5 140237818 140237818 G A PCDHA10 Missense_Mutation p.A729T 0.04 tolerated_low_confidence(0.14) benign(0.035) TCGA-F4-6463-01 5 167887731 167887731 G A WWC1 Missense_Mutation p.S967N 0.29 deleterious(0) probably_damaging(0.999) TCGA-F4-6463-01 5 37201837 37201837 G A C5orf42 Silent p.A1121A 0.26 TCGA-F4-6463-01 5 55203287 55203287 C T IL31RA Silent p.G451G 0.25 TCGA-F4-6463-01 5 80074579 80074579 G A MSH3 Missense_Mutation p.E787K 0.12 tolerated(0.16) possibly_damaging(0.474) TCGA-F4-6463-01 6 129470162 129470162 T G LAMA2 Missense_Mutation p.D316E 0.32 tolerated(1) benign(0.012) TCGA-F4-6463-01 6 22290504 22290504 G A PRL Missense_Mutation p.R131C 0.08 tolerated(0.05) probably_damaging(0.96) TCGA-F4-6463-01 6 27792116 27792116 A G HIST1H4J Missense_Mutation p.T72A 0.45 tolerated(0.05) benign(0.043) TCGA-F4-6463-01 6 44310768 44310768 T C SPATS1 5'UTR 0.09 TCGA-F4-6463-01 6 90660542 90660542 C T BACH2 Missense_Mutation p.R428Q 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6463-01 7 116557835 116557835 C T CAPZA2 Missense_Mutation p.R259C 0.26 deleterious(0.01) possibly_damaging(0.71) TCGA-F4-6463-01 7 121652675 121652675 A G PTPRZ1 Missense_Mutation p.D1192G 0.29 tolerated_low_confidence(0.42) benign(0.345) TCGA-F4-6463-01 7 122019464 122019464 G A CADPS2 Silent p.I1115I 0.25 TCGA-F4-6463-01 7 31890286 31890286 C T PDE1C Missense_Mutation p.G334R 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6463-01 7 72849013 72849013 C T FZD9 Missense_Mutation p.R226C 0.22 deleterious(0.01) possibly_damaging(0.825) TCGA-F4-6463-01 7 74212060 74212060 C T GTF2IRD2 Silent p.S597S 0.30 TCGA-F4-6463-01 7 77797302 77797302 C T MAGI2 Missense_Mutation p.D843N 0.26 deleterious(0) probably_damaging(0.941) TCGA-F4-6463-01 7 98580932 98580932 G A TRRAP Missense_Mutation p.A2951T 0.30 benign(0.121) TCGA-F4-6463-01 8 1616724 1616724 C T DLGAP2 Silent p.A600A 0.32 TCGA-F4-6463-01 8 52320746 52320746 T C PXDNL Silent p.R1146R 0.05 TCGA-F4-6463-01 8 92352656 92352656 G A SLC26A7 Silent p.P301P 0.08 TCGA-F4-6463-01 9 72965067 72965067 A G SMC5 Missense_Mutation p.K976R 0.26 deleterious(0.01) probably_damaging(0.951) TCGA-F4-6463-01 9 92001345 92001347 GAT - SEMA4D In_Frame_Del p.I461del 0.25 TCGA-F4-6463-01 X 120181905 120181905 C T GLUD2 Missense_Mutation p.R123W 0.07 deleterious(0.04) benign(0.114) TCGA-F4-6463-01 X 30254123 30254123 G A MAGEB3 Missense_Mutation p.A28T 0.54 tolerated(0.1) possibly_damaging(0.734) TCGA-F4-6463-01 X 44949018 44949018 G A KDM6A Nonsense_Mutation p.W1193* 0.53 TCGA-F4-6463-01 X 48244824 48244824 G A SSX4 Missense_Mutation p.R72H 0.28 tolerated(0.37) benign(0.002) TCGA-F4-6463-01 X 90692988 90692988 C A PABPC5 3'UTR 0.43 TCGA-F4-6463-01 X 90693459 90693459 T A PABPC5 3'UTR 0.57 TCGA-F4-6569-01 10 108427542 108427542 T A SORCS1 Silent p.R736R 0.20 TCGA-F4-6569-01 10 118434708 118434708 C T HSPA12A Missense_Mutation p.G538R 0.12 deleterious(0) probably_damaging(0.999) TCGA-F4-6569-01 10 323366 323366 C T DIP2C Missense_Mutation p.V1524I 0.22 deleterious(0.02) benign(0.214) TCGA-F4-6569-01 10 43615165 43615165 A G RET Missense_Mutation p.Q860R 0.24 tolerated(1) benign(0.003) TCGA-F4-6569-01 10 48413859 48413859 C T GDF2 Missense_Mutation p.E337K 0.28 tolerated(1) benign(0.004) TCGA-F4-6569-01 10 50108285 50108285 T A WDFY4 Missense_Mutation p.F2486Y 0.23 deleterious(0.05) possibly_damaging(0.562) TCGA-F4-6569-01 11 100179126 100179126 A C CNTN5 Missense_Mutation p.S886R 0.16 deleterious(0) possibly_damaging(0.751) TCGA-F4-6569-01 11 103060493 103060493 C A DYNC2H1 Missense_Mutation p.S2462Y 0.27 possibly_damaging(0.822) TCGA-F4-6569-01 11 103814181 103814181 T G PDGFD Missense_Mutation p.K257N 0.13 deleterious(0.02) possibly_damaging(0.562) TCGA-F4-6569-01 11 111680489 111680489 G A ALG9 Silent p.I366I 0.13 TCGA-F4-6569-01 11 117056911 117056911 G A SIDT2 Missense_Mutation p.V312I 0.23 tolerated(0.58) benign(0.002) TCGA-F4-6569-01 11 118382705 118382705 G A KMT2A Missense_Mutation p.R3704Q 0.21 probably_damaging(0.969) TCGA-F4-6569-01 11 12883805 12883805 G T TEAD1 Nonsense_Mutation p.E71* 0.47 TCGA-F4-6569-01 11 22301110 22301110 A C ANO5 Missense_Mutation p.K847N 0.43 deleterious(0) probably_damaging(1) TCGA-F4-6569-01 11 44286713 44286713 G A ALX4 Silent p.L309L 0.21 TCGA-F4-6569-01 11 4790663 4790663 A C OR51F1 Missense_Mutation p.L162R 0.14 tolerated(0.12) probably_damaging(0.928) TCGA-F4-6569-01 11 4903923 4903923 G A OR51T1 Missense_Mutation p.R292H 0.48 deleterious(0.02) benign(0.07) TCGA-F4-6569-01 11 55541130 55541130 T G OR5D13 Missense_Mutation p.F73V 0.16 deleterious(0.03) benign(0.103) TCGA-F4-6569-01 11 55873331 55873331 T A OR8H2 Missense_Mutation p.D271E 0.17 tolerated(0.07) benign(0.311) TCGA-F4-6569-01 11 66034014 66034014 C T KLC2 Intron 0.17 TCGA-F4-6569-01 11 66333178 66333178 A T CTSF Missense_Mutation p.L337M 0.23 deleterious(0.04) benign(0.25) TCGA-F4-6569-01 11 73020774 73020774 A T ARHGEF17 Missense_Mutation p.D364V 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.622) TCGA-F4-6569-01 11 77921590 77921590 C T USP35 Missense_Mutation p.R897W 0.22 deleterious(0) probably_damaging(0.998) TCGA-F4-6569-01 12 104350467 104350467 C T C12orf73 Missense_Mutation p.S17N 0.12 deleterious(0.04) possibly_damaging(0.682) TCGA-F4-6569-01 12 125437109 125437109 G A DHX37 Silent p.A901A 0.16 TCGA-F4-6569-01 12 129190447 129190447 C T TMEM132C Silent p.A978A 0.25 TCGA-F4-6569-01 12 28116525 28116525 G A PTHLH Nonsense_Mutation p.R94* 0.22 TCGA-F4-6569-01 12 72962415 72962415 A C TRHDE Missense_Mutation p.I659L 0.14 tolerated(0.4) benign(0.143) TCGA-F4-6569-01 12 7585135 7585135 G A CD163L1 Missense_Mutation p.R215C 0.21 deleterious(0.01) benign(0.178) TCGA-F4-6569-01 12 80192316 80192316 T C PPP1R12A Silent p.K683K 0.18 TCGA-F4-6569-01 13 101759920 101759920 A C NALCN Missense_Mutation p.F833V 0.20 deleterious(0) probably_damaging(0.992) TCGA-F4-6569-01 13 35644195 35644195 G A NBEA Missense_Mutation p.E464K 0.19 tolerated(0.11) benign(0.012) TCGA-F4-6569-01 13 46559617 46559617 C - ZC3H13 Frame_Shift_Del p.G512Vfs*23 0.30 TCGA-F4-6569-01 13 73636666 73636668 GAA - KLF5 In_Frame_Del p.S311del 0.31 TCGA-F4-6569-01 14 54417295 54417295 T C BMP4 Missense_Mutation p.K228E 0.09 tolerated(0.75) benign(0.032) TCGA-F4-6569-01 14 75022353 75022353 C T LTBP2 Missense_Mutation p.V292M 0.18 deleterious(0.04) benign(0.013) TCGA-F4-6569-01 15 100250887 100250887 C T MEF2A Missense_Mutation p.S347L 0.14 deleterious(0.02) probably_damaging(0.947) TCGA-F4-6569-01 15 22866744 22866744 A G TUBGCP5 Missense_Mutation p.T786A 0.10 tolerated(0.81) benign(0.002) TCGA-F4-6569-01 15 27128678 27128678 C T GABRA5 Silent p.D157D 0.27 TCGA-F4-6569-01 15 27777826 27777826 A C GABRG3 Missense_Mutation p.E401D 0.13 tolerated(0.45) benign(0.023) TCGA-F4-6569-01 15 74917274 74917274 C T CLK3 Missense_Mutation p.R337C 0.26 tolerated(0.07) benign(0.225) TCGA-F4-6569-01 15 84527523 84527523 G T ADAMTSL3 Nonsense_Mutation p.E245* 0.20 TCGA-F4-6569-01 16 16162132 16162132 C G ABCC1 Silent p.L599L 0.15 TCGA-F4-6569-01 16 55807369 55807369 C T CES1P1 RNA 0.17 TCGA-F4-6569-01 16 66950077 66950077 G A CDH16 Silent p.V105V 0.27 TCGA-F4-6569-01 17 18003881 18003881 A G DRG2 Splice_Site p.X181_splice 0.22 TCGA-F4-6569-01 17 26947012 26947012 G A KIAA0100 Missense_Mutation p.R1796W 0.23 deleterious(0) probably_damaging(0.999) TCGA-F4-6569-01 17 33591398 33591398 C T SLFN5 Silent p.S445S 0.20 TCGA-F4-6569-01 17 67084327 67084327 G A ABCA6 Nonsense_Mutation p.R1227* 0.25 TCGA-F4-6569-01 17 73234411 73234412 CT - GGA3 Frame_Shift_Del p.E707Gfs*34 0.12 TCGA-F4-6569-01 17 7814871 7814871 C T CHD3 Nonsense_Mutation p.R2050* 0.15 TCGA-F4-6569-01 17 8738737 8738737 C T PIK3R6 Silent p.A166A 0.19 TCGA-F4-6569-01 18 48593405 48593405 G A SMAD4 Missense_Mutation p.G386S 0.17 deleterious(0.04) probably_damaging(1) TCGA-F4-6569-01 19 19616216 19616216 G A GATAD2A Missense_Mutation p.R612H 0.25 deleterious(0) probably_damaging(0.999) TCGA-F4-6569-01 19 430733 430733 A G SHC2 Silent p.S375S 0.09 TCGA-F4-6569-01 19 4555493 4555493 G C SEMA6B Silent p.L185L 0.22 TCGA-F4-6569-01 19 52004819 52004819 C T SIGLEC12 Missense_Mutation p.D57N 0.12 tolerated(0.36) benign(0.414) TCGA-F4-6569-01 19 58352365 58352365 C G ZNF587B Missense_Mutation p.A108G 0.08 tolerated(0.05) benign(0.01) TCGA-F4-6569-01 1 107867468 107867468 G A NTNG1 Missense_Mutation p.V271I 0.20 tolerated(0.17) benign(0.022) TCGA-F4-6569-01 1 111490616 111490616 G C LRIF1 Missense_Mutation p.L759V 0.18 deleterious(0) possibly_damaging(0.801) TCGA-F4-6569-01 1 11591735 11591735 C T PTCHD2 Missense_Mutation p.R1115C 0.23 deleterious(0) possibly_damaging(0.517) TCGA-F4-6569-01 1 161751757 161751757 A G ATF6 Missense_Mutation p.D72G 0.18 tolerated(0.38) benign(0) TCGA-F4-6569-01 1 179562814 179562814 C A TDRD5 Missense_Mutation p.S151Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-F4-6569-01 1 19653075 19653076 - GT PQLC2 Frame_Shift_Ins p.L194Cfs*31 0.20 TCGA-F4-6569-01 1 201970505 201970505 C T RNPEP Silent p.G402G 0.22 TCGA-F4-6569-01 1 204115784 204115784 G A ETNK2 Silent p.N209N 0.23 TCGA-F4-6569-01 1 229568055 229568055 T C ACTA1 Missense_Mutation p.K193R 0.10 tolerated_low_confidence(0.12) possibly_damaging(0.784) TCGA-F4-6569-01 1 24130855 24130855 C T HMGCL Intron 0.21 TCGA-F4-6569-01 1 248039416 248039416 C A TRIM58 Silent p.V362V 0.14 TCGA-F4-6569-01 1 27106192 27106192 G T ARID1A Nonsense_Mutation p.E1935* 0.17 TCGA-F4-6569-01 1 28209449 28209449 T C THEMIS2 Silent p.R538R 0.10 TCGA-F4-6569-01 1 2938335 2938335 T C ACTRT2 Missense_Mutation p.F29L 0.19 tolerated(0.14) benign(0) TCGA-F4-6569-01 1 31194154 31194154 C T MATN1 Intron 0.62 TCGA-F4-6569-01 1 35251040 35251040 G C GJB3 Missense_Mutation p.G226A 0.20 tolerated(0.96) benign(0) TCGA-F4-6569-01 1 38332156 38332156 C T INPP5B Silent p.L787L 0.13 TCGA-F4-6569-01 1 5924556 5924556 C T NPHP4 Missense_Mutation p.V1280M 0.23 tolerated(0.23) benign(0.202) TCGA-F4-6569-01 1 68947761 68947761 A C DEPDC1 Missense_Mutation p.L577R 0.22 tolerated(0.36) benign(0.061) TCGA-F4-6569-01 20 14306169 14306169 C T FLRT3 3'UTR 0.14 TCGA-F4-6569-01 20 40827886 40827886 C T PTPRT Missense_Mutation p.G829R 0.16 deleterious(0.01) possibly_damaging(0.654) TCGA-F4-6569-01 20 46264191 46264191 G A NCOA3 Missense_Mutation p.S413N 0.15 tolerated(0.52) benign(0.001) TCGA-F4-6569-01 20 49626329 49626329 C T KCNG1 Missense_Mutation p.E183K 0.19 deleterious(0.03) benign(0.113) TCGA-F4-6569-01 20 51871749 51871749 G T TSHZ2 Silent p.V584V 0.14 TCGA-F4-6569-01 22 41716694 41716694 C T ZC3H7B Silent p.I10I 0.28 TCGA-F4-6569-01 2 102781637 102781637 T G IL1R1 Nonsense_Mutation p.L120* 0.18 TCGA-F4-6569-01 2 102968032 102968032 G C IL1RL1 Missense_Mutation p.S441T 0.14 deleterious(0) probably_damaging(0.997) TCGA-F4-6569-01 2 109086529 109086529 C G GCC2 Missense_Mutation p.H248Q 0.19 deleterious(0.02) possibly_damaging(0.502) TCGA-F4-6569-01 2 109088074 109088074 T G GCC2 Silent p.L763L 0.18 TCGA-F4-6569-01 2 125262020 125262020 T G CNTNAP5 Missense_Mutation p.L404R 0.20 deleterious(0.01) probably_damaging(1) TCGA-F4-6569-01 2 132021657 132021657 C T POTEE Missense_Mutation p.R877C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.663) TCGA-F4-6569-01 2 142567890 142567890 C T LRP1B Missense_Mutation p.D55N 0.19 possibly_damaging(0.822) TCGA-F4-6569-01 2 179615283 179615283 T C TTN Intron 0.19 TCGA-F4-6569-01 2 197866566 197866566 T G ANKRD44 Splice_Site p.X758_splice 0.26 TCGA-F4-6569-01 2 217234494 217234494 G A MARCH4 Missense_Mutation p.R164C 0.16 deleterious(0) benign(0.159) TCGA-F4-6569-01 2 25994317 25994317 G C ASXL2 Missense_Mutation p.L166V 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-F4-6569-01 2 54851984 54851984 C T SPTBN1 Missense_Mutation p.A409V 0.14 tolerated(0.1) probably_damaging(1) TCGA-F4-6569-01 2 55831212 55831212 C G SMEK2 Missense_Mutation p.D67H 0.11 deleterious(0.02) probably_damaging(0.96) TCGA-F4-6569-01 2 70188262 70188262 C T ASPRV1 Missense_Mutation p.V187I 0.19 tolerated(0.27) benign(0.007) TCGA-F4-6569-01 2 75426099 75426099 A T TACR1 5'UTR 0.17 TCGA-F4-6569-01 3 157839954 157839954 C T RSRC1 Missense_Mutation p.R21C 0.21 tolerated_low_confidence(0.15) unknown(0) TCGA-F4-6569-01 3 178922301 178922301 G A PIK3CA Missense_Mutation p.R357Q 0.14 tolerated(0.09) possibly_damaging(0.69) TCGA-F4-6569-01 3 178952084 178952084 C T PIK3CA Missense_Mutation p.H1047Y 0.28 tolerated(1) benign(0.008) TCGA-F4-6569-01 3 195027309 195027309 G A ACAP2 Silent p.R349R 0.11 TCGA-F4-6569-01 3 49212525 49212525 G A KLHDC8B Missense_Mutation p.R266H 0.14 tolerated(0.46) possibly_damaging(0.664) TCGA-F4-6569-01 3 56683072 56683072 G A FAM208A Missense_Mutation p.P461L 0.19 deleterious(0.04) benign(0.073) TCGA-F4-6569-01 3 74350908 74350908 G T CNTN3 Missense_Mutation p.T612K 0.19 deleterious(0) probably_damaging(0.99) TCGA-F4-6569-01 3 97888289 97888289 G A OR5H15 Missense_Mutation p.C249Y 0.17 deleterious(0) benign(0.094) TCGA-F4-6569-01 3 98530145 98530145 G A DCBLD2 Missense_Mutation p.T490M 0.18 deleterious(0.01) benign(0.443) TCGA-F4-6569-01 4 100451058 100451058 G T C4orf17 Missense_Mutation p.K163N 0.18 deleterious(0.02) probably_damaging(0.933) TCGA-F4-6569-01 4 109675860 109675860 G T ETNPPL Nonsense_Mutation p.Y139* 0.16 TCGA-F4-6569-01 4 138452515 138452515 C A PCDH18 Missense_Mutation p.S243I 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-F4-6569-01 4 155995 155995 A C ZNF718 RNA 0.16 TCGA-F4-6569-01 4 156135647 156135647 T G NPY2R Missense_Mutation p.F186V 0.26 deleterious(0) probably_damaging(0.999) TCGA-F4-6569-01 4 177142388 177142388 T G ASB5 Missense_Mutation p.Q196H 0.07 tolerated(0.67) probably_damaging(0.934) TCGA-F4-6569-01 4 70346510 70346510 G A UGT2B4 Missense_Mutation p.R477W 0.19 deleterious(0.02) possibly_damaging(0.638) TCGA-F4-6569-01 5 112175509 112175509 G - APC Frame_Shift_Del p.S1407Vfs*8 0.33 TCGA-F4-6569-01 5 112399730 112399730 C T MCC Missense_Mutation p.G722S 0.09 tolerated(0.36) benign(0.109) TCGA-F4-6569-01 5 140175793 140175793 G A PCDHA2 Missense_Mutation p.R415H 0.20 deleterious_low_confidence(0.03) benign(0.399) TCGA-F4-6569-01 5 140229442 140229442 G A PCDHA9 Silent p.A454A 0.30 TCGA-F4-6569-01 5 150945379 150945379 C T FAT2 Silent p.Q1038Q 0.14 TCGA-F4-6569-01 5 37174043 37174043 C G C5orf42 Missense_Mutation p.Q1995H 0.08 deleterious(0.03) benign(0.024) TCGA-F4-6569-01 5 38884140 38884140 G T OSMR Silent p.G210G 0.16 TCGA-F4-6569-01 5 75428044 75428044 G A SV2C Missense_Mutation p.V157I 0.10 deleterious(0.01) possibly_damaging(0.766) TCGA-F4-6569-01 5 88024383 88024383 G C MEF2C Missense_Mutation p.H353D 0.21 tolerated(0.22) probably_damaging(0.996) TCGA-F4-6569-01 6 107956390 107956390 A G SOBP Missense_Mutation p.H781R 0.31 tolerated_low_confidence(0.8) benign(0.001) TCGA-F4-6569-01 6 11104473 11104473 A G ERVFRD-1 Silent p.L357L 0.13 TCGA-F4-6569-01 6 144508325 144508325 C T STX11 Silent p.D187D 0.20 TCGA-F4-6569-01 6 158093837 158093837 C A ZDHHC14 Missense_Mutation p.L384I 0.18 tolerated(0.78) benign(0.002) TCGA-F4-6569-01 6 39864948 39864948 C A DAAM2 Intron 0.21 TCGA-F4-6569-01 6 96658749 96658749 A C FUT9 3'UTR 0.09 TCGA-F4-6569-01 7 100417780 100417780 C T EPHB4 Missense_Mutation p.R316Q 0.46 tolerated(0.05) benign(0.003) TCGA-F4-6569-01 7 102743981 102743981 C A NAPEPLD Silent p.V359V 0.08 TCGA-F4-6569-01 7 116849896 116849896 G T ST7 Missense_Mutation p.G437V 0.12 deleterious(0.01) probably_damaging(1) TCGA-F4-6569-01 7 142983291 142983293 GCA - TMEM139 In_Frame_Del p.A81del 0.18 TCGA-F4-6569-01 7 149509403 149509403 C T SSPO RNA 0.15 TCGA-F4-6569-01 7 2473267 2473267 G A CHST12 Silent p.P331P 0.12 TCGA-F4-6569-01 7 31682970 31682970 G T CCDC129 Missense_Mutation p.K688N 0.28 tolerated(0.06) probably_damaging(0.933) TCGA-F4-6569-01 7 4107506 4107506 T A SDK1 Missense_Mutation p.I983N 0.31 deleterious(0) probably_damaging(0.982) TCGA-F4-6569-01 7 6799881 6799881 C A RSPH10B2 Missense_Mutation p.H119N 0.11 tolerated(0.07) possibly_damaging(0.807) TCGA-F4-6569-01 7 77885551 77885551 C T MAGI2 Missense_Mutation p.V586I 0.36 tolerated(0.39) benign(0.032) TCGA-F4-6569-01 7 97482667 97482667 G A ASNS Nonsense_Mutation p.R424* 0.13 TCGA-F4-6569-01 7 97822795 97822795 C T LMTK2 Silent p.H1006H 0.09 TCGA-F4-6569-01 7 97870521 97870521 G A TECPR1 Silent p.P231P 0.36 TCGA-F4-6569-01 8 104898393 104898393 G A RIMS2 Silent p.T522T 0.27 TCGA-F4-6569-01 8 110493742 110493742 A G PKHD1L1 Silent p.T3136T 0.08 TCGA-F4-6569-01 8 144671494 144671494 C T EEF1D Missense_Mutation p.G253D 0.28 deleterious(0.03) benign(0.167) TCGA-F4-6569-01 8 146062866 146062866 C T ZNF7 Missense_Mutation p.T74I 0.14 tolerated(0.2) benign(0.006) TCGA-F4-6569-01 8 24813671 24813671 G A CTD-2168K21.2 5'Flank 0.10 TCGA-F4-6569-01 8 35544188 35544188 C T UNC5D Nonsense_Mutation p.Q349* 0.14 TCGA-F4-6569-01 8 35579877 35579877 G T UNC5D Missense_Mutation p.G423C 0.24 deleterious(0) probably_damaging(1) TCGA-F4-6569-01 8 77617903 77617903 C T ZFHX4 Missense_Mutation p.A527V 0.39 benign(0) TCGA-F4-6569-01 8 87410675 87410675 G C WWP1 Missense_Mutation p.E147Q 0.07 tolerated(0.27) benign(0.037) TCGA-F4-6569-01 8 97797423 97797423 C G CPQ Missense_Mutation p.L100V 0.16 deleterious(0) possibly_damaging(0.792) TCGA-F4-6569-01 9 117071681 117071681 C T COL27A1 Missense_Mutation p.R1787C 0.15 unknown(0) TCGA-F4-6569-01 9 14720109 14720109 A C CER1 Missense_Mutation p.F261L 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-F4-6569-01 9 36372530 36372530 C G RNF38 Intron 0.19 TCGA-F4-6569-01 9 84531278 84531278 C A SPATA31D5P RNA 0.16 TCGA-F4-6569-01 X 107683417 107683417 G A COL4A5 Missense_Mutation p.G21E 0.42 unknown(0) TCGA-F4-6569-01 X 110416303 110416303 G C PAK3 Missense_Mutation p.G311A 0.42 deleterious(0) probably_damaging(0.998) TCGA-F4-6569-01 X 125299355 125299355 G - DCAF12L2 Frame_Shift_Del p.L185Cfs*19 0.14 TCGA-F4-6569-01 X 136112695 136112695 C T GPR101 Missense_Mutation p.R380H 0.38 deleterious(0.05) benign(0.095) TCGA-F4-6569-01 X 155254960 155254960 G A WASH6P RNA 0.20 TCGA-F4-6569-01 X 1746599 1746599 A G ASMT Silent p.E126E 0.14 TCGA-F4-6569-01 X 30254732 30254732 A G MAGEB3 Missense_Mutation p.R231G 0.20 tolerated(1) benign(0.05) TCGA-F4-6569-01 X 34962359 34962359 G C FAM47B Missense_Mutation p.D471H 0.33 deleterious(0.02) probably_damaging(0.967) TCGA-F4-6569-01 X 48369709 48369709 A G PORCN Missense_Mutation p.S55G 0.09 tolerated(0.41) benign(0.006) TCGA-F4-6570-01 10 100195048 100195048 C T HPS1 Missense_Mutation p.G127S 0.29 tolerated(1) benign(0.03) TCGA-F4-6570-01 10 101090277 101090277 G A CNNM1 Missense_Mutation p.R378H 0.20 deleterious(0) probably_damaging(0.952) TCGA-F4-6570-01 10 101419689 101419689 G A ENTPD7 5'UTR 0.35 TCGA-F4-6570-01 10 102988411 102988411 G A LBX1 Silent p.C54C 0.46 TCGA-F4-6570-01 10 103360972 103360972 C T DPCD Missense_Mutation p.R95C 0.19 deleterious(0) probably_damaging(0.992) TCGA-F4-6570-01 10 103867869 103867869 G A LDB1 Missense_Mutation p.T406M 0.15 deleterious_low_confidence(0.01) benign(0.056) TCGA-F4-6570-01 10 103900905 103900905 T C PPRC1 Silent p.P880P 0.12 TCGA-F4-6570-01 10 104679412 104679412 C T CNNM2 Missense_Mutation p.P392L 0.33 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 10 105007440 105007442 TAA - RPEL1 3'UTR 0.15 TCGA-F4-6570-01 10 105793951 105793951 C T COL17A1 Missense_Mutation p.R1303Q 0.29 unknown(0) TCGA-F4-6570-01 10 105926427 105926427 T C WDR96 Missense_Mutation p.Q953R 0.17 tolerated(0.24) benign(0.023) TCGA-F4-6570-01 10 108589412 108589412 T A SORCS1 Missense_Mutation p.T216S 0.16 tolerated(0.15) possibly_damaging(0.762) TCGA-F4-6570-01 10 114182169 114182169 T C ACSL5 Silent p.L577L 0.34 TCGA-F4-6570-01 10 115515084 115515084 G A PLEKHS1 5'UTR 0.33 TCGA-F4-6570-01 10 118360710 118360710 G A PNLIPRP1 Missense_Mutation p.A354T 0.20 tolerated(0.43) benign(0.005) TCGA-F4-6570-01 10 119134467 119134467 G A PDZD8 Missense_Mutation p.T91M 0.38 deleterious(0.04) possibly_damaging(0.893) TCGA-F4-6570-01 10 11962993 11962993 T C UPF2 3'UTR 0.09 TCGA-F4-6570-01 10 120809334 120809334 G A EIF3A Silent p.G879G 0.30 TCGA-F4-6570-01 10 121586591 121586591 C T INPP5F Nonsense_Mutation p.R900* 0.29 TCGA-F4-6570-01 10 123324952 123324952 C A FGFR2 Missense_Mutation p.D126Y 0.42 deleterious(0) probably_damaging(0.993) TCGA-F4-6570-01 10 123844875 123844875 G A TACC2 Missense_Mutation p.G954S 0.32 benign(0.016) TCGA-F4-6570-01 10 124380832 124380832 C - DMBT1 Frame_Shift_Del p.H1721Tfs*24 0.25 TCGA-F4-6570-01 10 124596381 124596381 G T CUZD1 Silent p.S261S 0.40 TCGA-F4-6570-01 10 124672283 124672283 C A FAM24A Missense_Mutation p.A44E 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-F4-6570-01 10 126205798 126205798 G A LHPP Missense_Mutation p.R225Q 0.29 tolerated(0.41) benign(0.002) TCGA-F4-6570-01 10 12802998 12802999 AG - CAMK1D Frame_Shift_Del p.K119Gfs*38 0.22 TCGA-F4-6570-01 10 12867689 12867690 TG - CAMK1D Splice_Site p.X347_splice 0.21 TCGA-F4-6570-01 10 128795052 128795052 A T DOCK1 Missense_Mutation p.N172Y 0.22 deleterious(0) possibly_damaging(0.703) TCGA-F4-6570-01 10 129899602 129899602 G A MKI67 Missense_Mutation p.P3209S 0.35 tolerated_low_confidence(0.46) benign(0.003) TCGA-F4-6570-01 10 129907396 129907396 C A MKI67 Missense_Mutation p.C903F 0.07 tolerated(0.13) benign(0.003) TCGA-F4-6570-01 10 13251371 13251371 G A MCM10 3'UTR 0.19 TCGA-F4-6570-01 10 13344024 13344024 T - PHYH 5'Flank 0.25 TCGA-F4-6570-01 10 134016328 134016328 G T DPYSL4 Missense_Mutation p.R487M 0.13 deleterious(0) possibly_damaging(0.764) TCGA-F4-6570-01 10 134660511 134660511 G T TTC40 Silent p.A2064A 0.37 TCGA-F4-6570-01 10 135093332 135093332 G - TUBGCP2 Frame_Shift_Del p.Q911Kfs*25 0.12 TCGA-F4-6570-01 10 135371674 135371675 - T SYCE1 Frame_Shift_Ins p.Q106Tfs*17 0.08 TCGA-F4-6570-01 10 14563888 14563888 G A FAM107B Missense_Mutation p.R262W 0.14 deleterious(0.01) benign(0.271) TCGA-F4-6570-01 10 15145342 15145342 G A RPP38 Missense_Mutation p.R10Q 0.37 tolerated(0.06) possibly_damaging(0.881) TCGA-F4-6570-01 10 15646219 15646219 T C ITGA8 Silent p.E702E 0.31 TCGA-F4-6570-01 10 16526798 16526798 G A PTER Missense_Mutation p.A139T 0.20 tolerated(0.27) benign(0.098) TCGA-F4-6570-01 10 16873356 16873356 G A CUBN Missense_Mutation p.P3475S 0.33 deleterious(0.02) probably_damaging(1) TCGA-F4-6570-01 10 17113494 17113494 T A CUBN Missense_Mutation p.Q852H 0.15 tolerated(0.17) probably_damaging(0.918) TCGA-F4-6570-01 10 20290758 20290758 T G PLXDC2 Missense_Mutation p.V56G 0.20 deleterious_low_confidence(0) benign(0.108) TCGA-F4-6570-01 10 21098812 21098812 C T NEBL Missense_Mutation p.R845H 0.25 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 10 21115407 21115407 C T NEBL Missense_Mutation p.R613Q 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6570-01 10 24722005 24722005 C T KIAA1217 Missense_Mutation p.A212V 0.36 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 10 24832023 24832023 C T KIAA1217 Missense_Mutation p.P1275L 0.34 tolerated(0.53) benign(0.002) TCGA-F4-6570-01 10 25314555 25314555 C T THNSL1 3'UTR 0.25 TCGA-F4-6570-01 10 25888009 25888009 C T GPR158 Missense_Mutation p.R1152C 0.26 deleterious(0.04) benign(0.39) TCGA-F4-6570-01 10 26790030 26790031 CT - APBB1IP Frame_Shift_Del p.Q151Gfs*10 0.35 TCGA-F4-6570-01 10 27410337 27410337 T C YME1L1 Missense_Mutation p.N483D 0.10 deleterious(0) probably_damaging(0.966) TCGA-F4-6570-01 10 29776169 29776169 C T SVIL Missense_Mutation p.D1470N 0.25 deleterious(0) probably_damaging(0.989) TCGA-F4-6570-01 10 3124609 3124609 C T PFKP Missense_Mutation p.R48C 0.39 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 10 33552752 33552752 G A NRP1 Silent p.S160S 0.29 TCGA-F4-6570-01 10 35896891 35896891 G A GJD4 Silent p.R150R 0.21 TCGA-F4-6570-01 10 436203 436203 C T DIP2C Splice_Site p.X498_splice 0.30 TCGA-F4-6570-01 10 48371962 48371962 C A ZNF488 3'UTR 0.15 TCGA-F4-6570-01 10 48428713 48428713 A T GDF10 Missense_Mutation p.N391K 0.30 deleterious(0.01) possibly_damaging(0.811) TCGA-F4-6570-01 10 48438441 48438441 G A GDF10 Silent p.G90G 0.33 TCGA-F4-6570-01 10 49613003 49613003 G T MAPK8 Missense_Mutation p.M77I 0.33 deleterious(0.03) possibly_damaging(0.768) TCGA-F4-6570-01 10 50732504 50732504 T - ERCC6-PGBD3 Frame_Shift_Del p.E325Rfs*4 0.09 TCGA-F4-6570-01 10 51472599 51472599 A T AGAP7 Silent p.L127L 0.32 TCGA-F4-6570-01 10 51579212 51579212 G A NCOA4 Missense_Mutation p.R40Q 0.26 tolerated(0.26) benign(0.054) TCGA-F4-6570-01 10 51585019 51585019 T C NCOA4 Missense_Mutation p.L389S 0.09 tolerated(0.09) benign(0.082) TCGA-F4-6570-01 10 51769755 51769755 G T AGAP6 Missense_Mutation p.G624C 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-F4-6570-01 10 58118172 58118172 C T ZWINT 3'UTR 0.30 TCGA-F4-6570-01 10 61828709 61828717 GTGGTGGTA - ANK3 In_Frame_Del p.T3976_T3978del 0.19 TCGA-F4-6570-01 10 63170301 63170301 C T TMEM26 Missense_Mutation p.V296M 0.25 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 10 67748469 67748469 G A CTNNA3 Missense_Mutation p.A749V 0.19 deleterious(0.03) unknown(0) TCGA-F4-6570-01 10 70043993 70043993 C T PBLD Missense_Mutation p.G270R 0.24 deleterious(0) probably_damaging(0.943) TCGA-F4-6570-01 10 70190310 70190311 - A DNA2 Frame_Shift_Ins p.L783Ffs*28 0.28 TCGA-F4-6570-01 10 70446282 70446282 G A TET1 Missense_Mutation p.R1741H 0.21 tolerated(0.17) possibly_damaging(0.755) TCGA-F4-6570-01 10 71631958 71631958 G A COL13A1 Missense_Mutation p.G131R 0.27 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 10 72358189 72358189 C - PRF1 Frame_Shift_Del p.D430Tfs*10 0.27 TCGA-F4-6570-01 10 73574949 73574949 G A CDH23 Missense_Mutation p.A1087T 0.32 tolerated_low_confidence(0.07) benign(0.036) TCGA-F4-6570-01 10 75525312 75525312 G A SEC24C Missense_Mutation p.R444H 0.31 deleterious(0.05) benign(0.438) TCGA-F4-6570-01 10 75671677 75671677 G A PLAU Intron 0.12 TCGA-F4-6570-01 10 76781869 76781869 G A KAT6B Silent p.E1084E 0.27 TCGA-F4-6570-01 10 78761171 78761171 G A KCNMA1 Intron 0.37 TCGA-F4-6570-01 10 78846342 78846342 G - KCNMA1 Frame_Shift_Del p.N449Tfs*33 0.17 TCGA-F4-6570-01 10 78869992 78869992 T A KCNMA1 Missense_Mutation p.D357V 0.21 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 10 78870005 78870005 C T KCNMA1 Missense_Mutation p.V353I 0.23 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 10 85901227 85901227 T A GHITM 5'UTR 0.15 TCGA-F4-6570-01 10 85962737 85962737 A G CDHR1 Missense_Mutation p.D214G 0.34 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 10 85968528 85968528 G A CDHR1 Missense_Mutation p.G404D 0.13 tolerated(0.2) benign(0.077) TCGA-F4-6570-01 10 88704134 88704134 C T MMRN2 Silent p.L180L 0.24 TCGA-F4-6570-01 10 89720693 89720693 G T PTEN Nonsense_Mutation p.G282* 0.08 TCGA-F4-6570-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.10 TCGA-F4-6570-01 10 91352500 91352500 G A PANK1 Intron 0.15 TCGA-F4-6570-01 10 94608329 94608329 G A EXOC6 Silent p.E13E 0.33 TCGA-F4-6570-01 10 94757 94757 G T TUBB8 Nonsense_Mutation p.Y51* 0.14 TCGA-F4-6570-01 10 95552622 95552622 G A LGI1 Missense_Mutation p.R209H 0.25 tolerated(0.22) benign(0.005) TCGA-F4-6570-01 10 97916587 97916587 C T ZNF518A RNA 0.29 TCGA-F4-6570-01 10 97921074 97921074 C T ZNF518A RNA 0.35 TCGA-F4-6570-01 10 97923329 97923329 T - ZNF518A RNA 0.30 TCGA-F4-6570-01 10 98744051 98744051 C T C10orf12 Silent p.P968P 0.38 TCGA-F4-6570-01 11 100999477 100999477 C T PGR Missense_Mutation p.G109R 0.13 tolerated_low_confidence(0.17) benign(0.036) TCGA-F4-6570-01 11 1023964 1023964 C A MUC6 Missense_Mutation p.R1122M 0.40 unknown(0) TCGA-F4-6570-01 11 102592161 102592161 G A MMP8 Missense_Mutation p.A198V 0.29 deleterious(0) benign(0.253) TCGA-F4-6570-01 11 102816465 102816465 T C MMP13 Missense_Mutation p.N409D 0.28 tolerated(0.05) benign(0.001) TCGA-F4-6570-01 11 103126895 103126895 C A DYNC2H1 Missense_Mutation p.Q3470K 0.32 benign(0.016) TCGA-F4-6570-01 11 107833156 107833156 C T RAB39A 3'UTR 0.36 TCGA-F4-6570-01 11 108142001 108142001 G T ATM Missense_Mutation p.R982L 0.09 deleterious(0) possibly_damaging(0.644) TCGA-F4-6570-01 11 1094679 1094679 G A MUC2 Missense_Mutation p.G1923S 0.38 unknown(0) TCGA-F4-6570-01 11 1094828 1094828 C A MUC2 Silent p.I1972I 0.23 TCGA-F4-6570-01 11 114569423 114569423 T C NXPE2 Silent p.C263C 0.21 TCGA-F4-6570-01 11 118272186 118272186 C A ATP5L 5'UTR 0.40 TCGA-F4-6570-01 11 118375871 118375871 G A KMT2A Missense_Mutation p.M3088I 0.23 possibly_damaging(0.626) TCGA-F4-6570-01 11 118944073 118944073 C T VPS11 Silent p.H349H 0.32 TCGA-F4-6570-01 11 119050850 119050850 G A NLRX1 Missense_Mutation p.R707H 0.18 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 11 119066153 119066153 C A CCDC153 Missense_Mutation p.Q15H 0.30 deleterious(0.02) possibly_damaging(0.799) TCGA-F4-6570-01 11 120957839 120957839 G T TBCEL 3'UTR 0.17 TCGA-F4-6570-01 11 120989208 120989208 A T TECTA Silent p.P328P 0.33 TCGA-F4-6570-01 11 121038819 121038819 C A TECTA Missense_Mutation p.N1881K 0.42 deleterious(0.05) probably_damaging(0.987) TCGA-F4-6570-01 11 121428048 121428048 G A SORL1 Missense_Mutation p.R866Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 11 121490511 121490511 T C SORL1 Missense_Mutation p.V1925A 0.14 tolerated(0.07) probably_damaging(0.984) TCGA-F4-6570-01 11 123483564 123483564 G A GRAMD1B Missense_Mutation p.R529H 0.23 tolerated(0.25) benign(0.016) TCGA-F4-6570-01 11 123524568 123524568 G A SCN3B 5'UTR 0.33 TCGA-F4-6570-01 11 123810958 123810958 T C OR4D5 Missense_Mutation p.L212P 0.27 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 11 124180410 124180410 A C OR8D1 Missense_Mutation p.F85V 0.13 deleterious(0) possibly_damaging(0.697) TCGA-F4-6570-01 11 125875748 125875748 G - CDON Frame_Shift_Del p.P586Hfs*28 0.16 TCGA-F4-6570-01 11 1260163 1260163 C A MUC5B Silent p.G1120G 0.25 TCGA-F4-6570-01 11 126141332 126141332 A G FOXRED1 Missense_Mutation p.D29G 0.09 tolerated(0.07) benign(0.04) TCGA-F4-6570-01 11 1263238 1263238 C T MUC5B Missense_Mutation p.R1710C 0.10 unknown(0) TCGA-F4-6570-01 11 1266767 1266767 C A MUC5B Missense_Mutation p.P2886H 0.35 unknown(0) TCGA-F4-6570-01 11 128332245 128332245 C A ETS1 3'UTR 0.24 TCGA-F4-6570-01 11 12958813 12958813 C T TEAD1 3'UTR 0.23 TCGA-F4-6570-01 11 130332455 130332455 G T ADAMTS15 Missense_Mutation p.S441I 0.49 tolerated(0.2) possibly_damaging(0.852) TCGA-F4-6570-01 11 134048586 134048586 G - NCAPD3 Frame_Shift_Del p.Q909Rfs*10 0.37 TCGA-F4-6570-01 11 134118307 134118307 G A THYN1 3'UTR 0.20 TCGA-F4-6570-01 11 134126542 134126542 G T ACAD8 Missense_Mutation p.K70N 0.34 tolerated(0.18) benign(0.12) TCGA-F4-6570-01 11 134181042 134181042 A T GLB1L3 Missense_Mutation p.D422V 0.32 deleterious(0) benign(0.362) TCGA-F4-6570-01 11 134241653 134241653 C T GLB1L2 Missense_Mutation p.T479I 0.34 tolerated(0.07) benign(0.002) TCGA-F4-6570-01 11 17099177 17099177 C T RPS13 Missense_Mutation p.M4I 0.23 deleterious(0.03) benign(0.248) TCGA-F4-6570-01 11 17409452 17409452 G A KCNJ11 Silent p.L63L 0.23 TCGA-F4-6570-01 11 18637073 18637073 G A SPTY2D1 Missense_Mutation p.H250Y 0.31 tolerated(0.4) benign(0.152) TCGA-F4-6570-01 11 1902786 1902786 C - LSP1 Frame_Shift_Del p.Q236Sfs*31 0.21 TCGA-F4-6570-01 11 2005704 2005704 G A MRPL23-AS1 RNA 0.30 TCGA-F4-6570-01 11 20805244 20805244 A T NELL1 Missense_Mutation p.H68L 0.34 deleterious(0.05) benign(0.165) TCGA-F4-6570-01 11 20805262 20805262 G T NELL1 Missense_Mutation p.S74I 0.30 tolerated(0.25) benign(0.04) TCGA-F4-6570-01 11 22382477 22382477 G A SLC17A6 Missense_Mutation p.S203N 0.30 deleterious(0.03) probably_damaging(0.953) TCGA-F4-6570-01 11 22646255 22646255 T C FANCF Missense_Mutation p.S368G 0.11 tolerated_low_confidence(0.19) benign(0.015) TCGA-F4-6570-01 11 26353784 26353784 G A ANO3 5'UTR 0.31 TCGA-F4-6570-01 11 26677929 26677929 A C ANO3 Missense_Mutation p.R888S 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-F4-6570-01 11 27016530 27016530 C T FIBIN Missense_Mutation p.R153W 0.29 deleterious_low_confidence(0) benign(0.219) TCGA-F4-6570-01 11 32410544 32410544 T G WT1 3'UTR 0.17 TCGA-F4-6570-01 11 33079609 33079609 G A TCP11L1 Missense_Mutation p.G188R 0.19 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 11 35219667 35219667 G C CD44 Splice_Site p.X266_splice 0.21 TCGA-F4-6570-01 11 35641183 35641183 G A FJX1 Silent p.A333A 0.26 TCGA-F4-6570-01 11 35641844 35641844 G C FJX1 3'UTR 0.14 TCGA-F4-6570-01 11 4471097 4471097 C T OR52K2 Silent p.I176I 0.23 TCGA-F4-6570-01 11 45948338 45948338 G A GYLTL1B Missense_Mutation p.R414H 0.37 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 11 46393069 46393069 G A DGKZ Silent p.Q413Q 0.26 TCGA-F4-6570-01 11 46399781 46399781 T C DGKZ Splice_Site p.X980_splice 0.29 TCGA-F4-6570-01 11 46407024 46407024 C T CHRM4 Missense_Mutation p.A362T 0.26 tolerated(0.43) benign(0.281) TCGA-F4-6570-01 11 46745004 46745004 G T F2 Silent p.T165T 0.33 TCGA-F4-6570-01 11 47296477 47296477 G A MADD Silent p.L142L 0.32 TCGA-F4-6570-01 11 47296508 47296508 G A MADD Missense_Mutation p.V153M 0.25 tolerated(0.1) benign(0.003) TCGA-F4-6570-01 11 47460263 47460264 - C RAPSN Intron 0.22 TCGA-F4-6570-01 11 47594774 47594774 C T KBTBD4 Missense_Mutation p.R438H 0.15 tolerated(0.31) benign(0.001) TCGA-F4-6570-01 11 47744606 47744606 A T FNBP4 Silent p.P909P 0.27 TCGA-F4-6570-01 11 5011876 5011877 TA - MMP26 Frame_Shift_Del p.Y125* 0.28 TCGA-F4-6570-01 11 55657450 55657450 C A TRIM51 Missense_Mutation p.P265H 0.28 deleterious(0.01) possibly_damaging(0.687) TCGA-F4-6570-01 11 55659219 55659219 T C TRIM51 3'UTR 0.33 TCGA-F4-6570-01 11 57080357 57080357 G T TNKS1BP1 Missense_Mutation p.P602H 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-F4-6570-01 11 57457892 57457892 C T ZDHHC5 Missense_Mutation p.R215C 0.20 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 11 57947583 57947583 G A OR9Q1 Missense_Mutation p.V223M 0.39 tolerated(0.27) benign(0.15) TCGA-F4-6570-01 11 5809914 5809914 A C OR52N1 Missense_Mutation p.F45V 0.11 tolerated(0.49) benign(0.044) TCGA-F4-6570-01 11 58660157 58660157 G - GLYATL1P2 RNA 0.23 TCGA-F4-6570-01 11 5878524 5878524 G A OR52E8 Missense_Mutation p.R137W 0.30 deleterious(0.01) benign(0.028) TCGA-F4-6570-01 11 6023379 6023379 G T OR56A4 Missense_Mutation p.L334M 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-F4-6570-01 11 60482508 60482508 G A MS4A8 Silent p.A183A 0.34 TCGA-F4-6570-01 11 60688355 60688355 C - TMEM109 Intron 0.12 TCGA-F4-6570-01 11 609288 609288 G A PHRF1 Missense_Mutation p.A1277T 0.14 tolerated(0.47) benign(0.001) TCGA-F4-6570-01 11 61252184 61252184 C T PPP1R32 Nonsense_Mutation p.Q136* 0.30 TCGA-F4-6570-01 11 62520294 62520294 G A ZBTB3 Silent p.A331A 0.28 TCGA-F4-6570-01 11 63680191 63680191 G A RCOR2 Silent p.F328F 0.23 TCGA-F4-6570-01 11 63884259 63884259 G A FLRT1 Missense_Mutation p.A174T 0.26 tolerated(0.14) benign(0.043) TCGA-F4-6570-01 11 64108790 64108790 C T CCDC88B Missense_Mutation p.A146V 0.46 deleterious(0.01) probably_damaging(1) TCGA-F4-6570-01 11 64532775 64532777 AAG - SF1 3'UTR 0.34 TCGA-F4-6570-01 11 6461701 6461701 A - HPX Frame_Shift_Del p.F70Lfs*16 0.25 TCGA-F4-6570-01 11 64662682 64662682 C A ATG2A Splice_Site p.X1861_splice 0.19 TCGA-F4-6570-01 11 64825359 64825361 AGA - NAALADL1 In_Frame_Del p.S156del 0.42 TCGA-F4-6570-01 11 64896087 64896087 C T SYVN1 Silent p.T565T 0.15 TCGA-F4-6570-01 11 65417896 65417896 G T SIPA1 Missense_Mutation p.E976D 0.20 tolerated(0.26) possibly_damaging(0.524) TCGA-F4-6570-01 11 65650873 65650873 G - CTSW Frame_Shift_Del p.A335Pfs*34 0.20 TCGA-F4-6570-01 11 66050236 66050236 C T CNIH2 Silent p.C61C 0.27 TCGA-F4-6570-01 11 66052363 66052363 G A YIF1A Missense_Mutation p.S239L 0.31 tolerated(0.95) benign(0.001) TCGA-F4-6570-01 11 66192380 66192380 C T NPAS4 Silent p.S673S 0.18 TCGA-F4-6570-01 11 66407164 66407164 C T RBM4 5'UTR 0.09 TCGA-F4-6570-01 11 6652592 6652592 G A DCHS1 Missense_Mutation p.A1241V 0.23 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 11 66834210 66834210 G T RHOD Silent p.G74G 0.22 TCGA-F4-6570-01 11 67176565 67176565 C - TBC1D10C Frame_Shift_Del p.A321Rfs*100 0.40 TCGA-F4-6570-01 11 67202550 67202550 G A RPS6KB2 Silent p.P453P 0.13 TCGA-F4-6570-01 11 67399806 67399806 G A TBX10 Missense_Mutation p.A284V 0.37 tolerated(0.51) benign(0.005) TCGA-F4-6570-01 11 6806774 6806774 G A OR2AG1 Missense_Mutation p.C169Y 0.26 deleterious(0) probably_damaging(0.995) TCGA-F4-6570-01 11 68193528 68193528 C T LRP5 Silent p.I1170I 0.27 TCGA-F4-6570-01 11 68483387 68483387 C T MTL5 Missense_Mutation p.S313N 0.27 tolerated(0.96) benign(0.015) TCGA-F4-6570-01 11 68853332 68853333 TG - TPCN2 Frame_Shift_Del p.W647Efs*90 0.13 TCGA-F4-6570-01 11 7064968 7064968 G T NLRP14 Missense_Mutation p.D571Y 0.11 deleterious(0.01) possibly_damaging(0.759) TCGA-F4-6570-01 11 75902779 75902779 C T WNT11 Missense_Mutation p.R240Q 0.24 deleterious(0.01) benign(0.065) TCGA-F4-6570-01 11 7669616 7669616 A G PPFIBP2 Splice_Site p.X549_splice 0.36 TCGA-F4-6570-01 11 76830163 76830163 G T CAPN5 Missense_Mutation p.G419C 0.23 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 11 7982636 7982636 C T NLRP10 Missense_Mutation p.A175T 0.16 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 11 7982867 7982867 A G NLRP10 Missense_Mutation p.Y98H 0.18 deleterious(0.02) probably_damaging(0.985) TCGA-F4-6570-01 11 82443869 82443869 C T FAM181B Silent p.P301P 0.75 TCGA-F4-6570-01 11 82877219 82877219 A - PCF11 Frame_Shift_Del p.K429Rfs*7 0.17 TCGA-F4-6570-01 11 83544713 83544713 C T DLG2 Missense_Mutation p.A556T 0.43 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 11 8640308 8640308 G A TRIM66 Nonsense_Mutation p.R1223* 0.38 TCGA-F4-6570-01 11 8706299 8706299 C T RPL27A Missense_Mutation p.H60Y 0.39 tolerated(0.31) benign(0.062) TCGA-F4-6570-01 11 89424653 89424653 G T FOLH1B RNA 0.10 TCGA-F4-6570-01 11 93471368 93471368 C T TAF1D Silent p.K122K 0.17 TCGA-F4-6570-01 11 94862682 94862682 T - ENDOD1 Frame_Shift_Del p.F482Lfs*71 0.32 TCGA-F4-6570-01 11 9530252 9530252 A G ZNF143 Missense_Mutation p.T412A 0.20 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 11 96116453 96116453 A G CCDC82 Missense_Mutation p.L324S 0.19 deleterious(0.05) benign(0.11) TCGA-F4-6570-01 11 96125290 96125290 G A JRKL Missense_Mutation p.E493K 0.10 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 12 101520735 101520736 AG - ANO4 Frame_Shift_Del p.K886Vfs*9 0.19 TCGA-F4-6570-01 12 105425667 105425667 A T ALDH1L2 Missense_Mutation p.S764T 0.17 tolerated(0.1) benign(0.264) TCGA-F4-6570-01 12 105534694 105534695 - A KIAA1033 Frame_Shift_Ins p.Y529Ifs*7 0.30 TCGA-F4-6570-01 12 105536923 105536923 C T KIAA1033 Missense_Mutation p.R638C 0.30 deleterious(0.02) possibly_damaging(0.785) TCGA-F4-6570-01 12 106717298 106717298 C A TCP11L2 Missense_Mutation p.H216N 0.31 tolerated(0.44) possibly_damaging(0.744) TCGA-F4-6570-01 12 107712933 107712933 C A BTBD11 Silent p.A72A 0.31 TCGA-F4-6570-01 12 108919340 108919340 G A SART3 Missense_Mutation p.S806L 0.30 deleterious(0.02) probably_damaging(0.943) TCGA-F4-6570-01 12 109611988 109611988 T G ACACB Missense_Mutation p.V390G 0.16 deleterious(0) benign(0.044) TCGA-F4-6570-01 12 109634925 109634925 G A ACACB Missense_Mutation p.S865N 0.51 deleterious(0) probably_damaging(0.958) TCGA-F4-6570-01 12 109677765 109677765 C T ACACB Missense_Mutation p.P1598L 0.08 deleterious(0.01) probably_damaging(0.973) TCGA-F4-6570-01 12 110207106 110207106 G A FAM222A 3'UTR 0.21 TCGA-F4-6570-01 12 112622918 112622918 G A HECTD4 Silent p.T3138T 0.28 TCGA-F4-6570-01 12 112688117 112688117 G A HECTD4 Silent p.L1115L 0.09 TCGA-F4-6570-01 12 113614712 113614712 G A DDX54 Missense_Mutation p.H229Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 12 113633674 113633674 G A IQCD Silent p.D250D 0.26 TCGA-F4-6570-01 12 11506284 11506284 A C PRB1 Silent p.P118P 0.09 TCGA-F4-6570-01 12 117703230 117703230 C - NOS1 Frame_Shift_Del p.G676Afs*64 0.30 TCGA-F4-6570-01 12 118474221 118474221 G A WSB2 Missense_Mutation p.A252V 0.38 deleterious(0.03) probably_damaging(0.957) TCGA-F4-6570-01 12 118848935 118848935 C A SUDS3 Nonsense_Mutation p.C287* 0.28 TCGA-F4-6570-01 12 119419651 119419651 A G SRRM4 5'UTR 0.14 TCGA-F4-6570-01 12 120582225 120582225 G A GCN1L1 Missense_Mutation p.R1794C 0.21 probably_damaging(0.999) TCGA-F4-6570-01 12 121435461 121435461 C - HNF1A Frame_Shift_Del p.H500Tfs*31 0.20 TCGA-F4-6570-01 12 122090688 122090688 C A MORN3 Silent p.V225V 0.24 TCGA-F4-6570-01 12 122092275 122092275 C T MORN3 Missense_Mutation p.R123H 0.36 deleterious(0.02) possibly_damaging(0.876) TCGA-F4-6570-01 12 122803896 122803896 C A CLIP1 Splice_Site p.X1084_splice 0.34 TCGA-F4-6570-01 12 123281942 123281942 G A CCDC62 Silent p.Q287Q 0.22 TCGA-F4-6570-01 12 123475170 123475170 G A PITPNM2 Missense_Mutation p.R831C 0.29 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 12 129559152 129559152 C T TMEM132D Silent p.T856T 0.09 TCGA-F4-6570-01 12 129563094 129563094 C T TMEM132D Silent p.L700L 0.19 TCGA-F4-6570-01 12 130648150 130648150 C T FZD10 Silent p.R221R 0.43 TCGA-F4-6570-01 12 131569088 131569088 C T GPR133 Silent p.S517S 0.12 TCGA-F4-6570-01 12 13221569 13221569 C A KIAA1467 Missense_Mutation p.P431H 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 12 132326218 132326218 C T MMP17 Silent p.H252H 0.08 TCGA-F4-6570-01 12 132397762 132397762 G A ULK1 Silent p.A372A 0.57 TCGA-F4-6570-01 12 132594348 132594348 G A EP400NL 3'Flank 0.30 TCGA-F4-6570-01 12 132630166 132630166 A G NOC4L Missense_Mutation p.N101D 0.24 tolerated(0.48) benign(0.003) TCGA-F4-6570-01 12 133158761 133158761 C - FBRSL1 Frame_Shift_Del p.P748Rfs*14 0.50 TCGA-F4-6570-01 12 133252024 133252024 C - POLE Frame_Shift_Del p.E396Sfs*16 0.11 TCGA-F4-6570-01 12 133733625 133733625 A G ZNF10 3'UTR 0.38 TCGA-F4-6570-01 12 14659126 14659126 G T PLBD1 Missense_Mutation p.N483K 0.20 tolerated(0.95) benign(0.186) TCGA-F4-6570-01 12 14927782 14927782 G T H2AFJ Silent p.T126T 0.39 TCGA-F4-6570-01 12 15095559 15095559 G A ARHGDIB Missense_Mutation p.A168V 0.18 tolerated(0.31) benign(0.123) TCGA-F4-6570-01 12 18876409 18876409 G A PLCZ1 Missense_Mutation p.T68M 0.25 tolerated(0.08) benign(0.086) TCGA-F4-6570-01 12 19646795 19646795 C A AEBP2 Missense_Mutation p.P350H 0.25 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-F4-6570-01 12 25232195 25232195 C T LRMP Silent p.R14R 0.11 TCGA-F4-6570-01 12 26810750 26810750 C T ITPR2 Nonsense_Mutation p.W694* 0.27 TCGA-F4-6570-01 12 27132834 27132834 C T TM7SF3 Missense_Mutation p.G358S 0.37 deleterious(0.02) possibly_damaging(0.639) TCGA-F4-6570-01 12 29648372 29648372 T C OVCH1 Missense_Mutation p.I100M 0.12 tolerated(0.16) benign(0.071) TCGA-F4-6570-01 12 3048530 3048530 G T TULP3 Missense_Mutation p.D417Y 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 12 32786535 32786535 G A FGD4 Missense_Mutation p.G605D 0.30 deleterious(0.04) benign(0.41) TCGA-F4-6570-01 12 32873620 32873622 AAG - DNM1L In_Frame_Del p.K256del 0.16 TCGA-F4-6570-01 12 32903672 32903674 CTT - YARS2 In_Frame_Del p.E361del 0.10 TCGA-F4-6570-01 12 3678685 3678685 G A PRMT8 Missense_Mutation p.V223M 0.33 tolerated(0.18) benign(0.159) TCGA-F4-6570-01 12 41352951 41352951 G A CNTN1 Silent p.A573A 0.26 TCGA-F4-6570-01 12 42853924 42853924 G T PRICKLE1 Missense_Mutation p.A728D 0.35 tolerated(0.63) benign(0.1) TCGA-F4-6570-01 12 42854137 42854137 C T PRICKLE1 Missense_Mutation p.R657Q 0.12 tolerated(0.25) benign(0.134) TCGA-F4-6570-01 12 43771225 43771225 G A ADAMTS20 Silent p.Y1646Y 0.27 TCGA-F4-6570-01 12 46230626 46230626 T - ARID2 Frame_Shift_Del p.L293* 0.25 TCGA-F4-6570-01 12 46233111 46233111 G A ARID2 Splice_Site p.X444_splice 0.35 TCGA-F4-6570-01 12 46244770 46244770 C T ARID2 Missense_Mutation p.P955L 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.451) TCGA-F4-6570-01 12 48174346 48174346 T C SLC48A1 3'UTR 0.29 TCGA-F4-6570-01 12 48393881 48393881 C A COL2A1 Missense_Mutation p.G38V 0.11 unknown(0) TCGA-F4-6570-01 12 4922682 4922682 C A KCNA6 3'UTR 0.35 TCGA-F4-6570-01 12 49396634 49396634 C T PRKAG1 3'UTR 0.42 TCGA-F4-6570-01 12 49431349 49431349 G T KMT2D Missense_Mutation p.Q3264K 0.16 possibly_damaging(0.824) TCGA-F4-6570-01 12 50025201 50025201 C - PRPF40B Frame_Shift_Del p.P36Hfs*11 0.38 TCGA-F4-6570-01 12 5027395 5027395 G T KCNA1 3'UTR 0.24 TCGA-F4-6570-01 12 50746110 50746110 G T FAM186A Missense_Mutation p.A1502D 0.23 tolerated(0.2) benign(0.061) TCGA-F4-6570-01 12 50746182 50746182 G T FAM186A Missense_Mutation p.A1478D 0.10 tolerated(0.08) benign(0.011) TCGA-F4-6570-01 12 50867887 50867887 G A LARP4 Silent p.S591S 0.31 TCGA-F4-6570-01 12 51069197 51069197 A T DIP2B Missense_Mutation p.E294D 0.12 tolerated(0.05) benign(0.32) TCGA-F4-6570-01 12 5154436 5154436 G A KCNA5 Missense_Mutation p.E375K 0.31 deleterious(0.03) probably_damaging(0.941) TCGA-F4-6570-01 12 5155376 5155376 G A KCNA5 3'UTR 0.28 TCGA-F4-6570-01 12 51853836 51853836 G A SLC4A8 Silent p.V319V 0.12 TCGA-F4-6570-01 12 52145343 52145343 C T SCN8A Missense_Mutation p.P779L 0.08 tolerated(0.11) benign(0.063) TCGA-F4-6570-01 12 52283264 52283264 G A ANKRD33 Missense_Mutation p.R212H 0.26 deleterious(0.03) benign(0.014) TCGA-F4-6570-01 12 52283274 52283274 C T ANKRD33 Intron 0.12 TCGA-F4-6570-01 12 52760898 52760898 C T KRT85 Missense_Mutation p.V98M 0.36 deleterious(0) probably_damaging(0.994) TCGA-F4-6570-01 12 52910626 52910626 T C KRT5 Missense_Mutation p.N412D 0.12 deleterious(0) benign(0.281) TCGA-F4-6570-01 12 53073618 53073618 T A KRT1 Missense_Mutation p.E172V 0.25 deleterious(0) probably_damaging(0.917) TCGA-F4-6570-01 12 53073619 53073619 C T KRT1 Missense_Mutation p.E172K 0.25 deleterious(0.03) possibly_damaging(0.542) TCGA-F4-6570-01 12 53217737 53217737 G A KRT79 Silent p.N360N 0.22 TCGA-F4-6570-01 12 53491443 53491443 C G IGFBP6 5'UTR 0.16 TCGA-F4-6570-01 12 53694033 53694033 G A C12orf10 Missense_Mutation p.D106N 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 12 54059162 54059162 G A ATP5G2 Missense_Mutation p.A178V 0.30 deleterious(0.04) possibly_damaging(0.878) TCGA-F4-6570-01 12 54118938 54118938 A G CALCOCO1 Missense_Mutation p.V30A 0.32 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 12 54338837 54338837 C T HOXC13 Missense_Mutation p.R264C 0.34 deleterious(0) probably_damaging(0.98) TCGA-F4-6570-01 12 54803374 54803374 C T ITGA5 Silent p.R119R 0.19 TCGA-F4-6570-01 12 56119665 56119667 TCT - CD63 In_Frame_Del p.K194del 0.37 TCGA-F4-6570-01 12 56234595 56234595 G A MMP19 Missense_Mutation p.R126W 0.43 deleterious(0) probably_damaging(0.994) TCGA-F4-6570-01 12 56577702 56577702 C T SMARCC2 Missense_Mutation p.R192Q 0.24 deleterious(0) benign(0.238) TCGA-F4-6570-01 12 56822139 56822139 G A TIMELESS Nonsense_Mutation p.R487* 0.10 TCGA-F4-6570-01 12 56963734 56963734 C T RBMS2 Missense_Mutation p.T115I 0.40 deleterious(0.05) possibly_damaging(0.825) TCGA-F4-6570-01 12 57912946 57912946 T - DDIT3 Intron 0.23 TCGA-F4-6570-01 12 57918126 57918126 G - MBD6 Frame_Shift_Del p.G15Afs*68 0.32 TCGA-F4-6570-01 12 57919697 57919697 C - MBD6 Frame_Shift_Del p.F318Sfs*59 0.24 TCGA-F4-6570-01 12 58014151 58014151 G A SLC26A10 Missense_Mutation p.V50M 0.26 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 12 5939612 5939612 G A ANO2 Missense_Mutation p.R273C 0.42 deleterious(0) probably_damaging(0.984) TCGA-F4-6570-01 12 6127971 6127971 G A VWF Missense_Mutation p.T1538M 0.50 tolerated(0.09) benign(0.34) TCGA-F4-6570-01 12 63042352 63042352 G A PPM1H Missense_Mutation p.R488W 0.35 deleterious(0) probably_damaging(0.956) TCGA-F4-6570-01 12 6443371 6443371 C - TNFRSF1A Frame_Shift_Del p.V27Lfs*8 0.29 TCGA-F4-6570-01 12 64536212 64536212 G A SRGAP1 Silent p.T1006T 0.21 TCGA-F4-6570-01 12 65514257 65514258 TC - WIF1 Frame_Shift_Del p.R76Nfs*26 0.13 TCGA-F4-6570-01 12 6691425 6691425 G A CHD4 Missense_Mutation p.R1465W 0.34 deleterious(0) probably_damaging(0.965) TCGA-F4-6570-01 12 68054889 68054889 T C DYRK2 3'UTR 0.23 TCGA-F4-6570-01 12 68055954 68055954 A - DYRK2 3'UTR 0.15 TCGA-F4-6570-01 12 6859161 6859161 G A MLF2 Missense_Mutation p.R138W 0.33 deleterious(0) probably_damaging(0.954) TCGA-F4-6570-01 12 68646360 68646360 T C IL22 Missense_Mutation p.Q107R 0.11 tolerated(0.2) benign(0.131) TCGA-F4-6570-01 12 6946690 6946690 C T LEPREL2 Missense_Mutation p.P554L 0.33 tolerated(0.05) possibly_damaging(0.49) TCGA-F4-6570-01 12 6955994 6955994 G T GNB3 Nonsense_Mutation p.G319* 0.24 TCGA-F4-6570-01 12 7050048 7050048 G A ATN1 Missense_Mutation p.A1074T 0.25 probably_damaging(0.976) TCGA-F4-6570-01 12 7125754 7125754 C - LPCAT3 5'UTR 0.31 TCGA-F4-6570-01 12 72092769 72092769 A T TMEM19 Missense_Mutation p.I243F 0.23 tolerated(0.3) benign(0) TCGA-F4-6570-01 12 7261753 7261753 C - C1RL Frame_Shift_Del p.K9Nfs*44 0.28 TCGA-F4-6570-01 12 81072393 81072393 T - PTPRQ Frame_Shift_Del p.L2248Yfs*? 0.26 TCGA-F4-6570-01 12 81331661 81331661 G A LIN7A 5'UTR 0.42 TCGA-F4-6570-01 12 85441219 85441220 - A LRRIQ1 Frame_Shift_Ins p.K219Efs*16 0.14 TCGA-F4-6570-01 12 86373716 86373716 A G MGAT4C Missense_Mutation p.L263P 0.09 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 12 8757877 8757877 C T AICDA Missense_Mutation p.A121T 0.40 tolerated(0.49) benign(0.111) TCGA-F4-6570-01 12 89864201 89864201 A G POC1B Silent p.D249D 0.38 TCGA-F4-6570-01 12 8995918 8995918 C A A2ML1 Silent p.A479A 0.35 TCGA-F4-6570-01 12 9220517 9220517 G T A2M Intron 0.39 TCGA-F4-6570-01 12 93196449 93196449 T G EEA1 Missense_Mutation p.K801Q 0.17 tolerated(1) benign(0.001) TCGA-F4-6570-01 12 93803545 93803545 G - UBE2N 3'UTR 0.27 TCGA-F4-6570-01 12 95694094 95694094 A C VEZT Missense_Mutation p.E662A 0.15 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 12 96660998 96660998 A G ELK3 3'UTR 0.23 TCGA-F4-6570-01 13 103446100 103446100 G A KDELC1 Missense_Mutation p.R149W 0.24 deleterious(0) possibly_damaging(0.606) TCGA-F4-6570-01 13 108882803 108882803 T A ABHD13 3'UTR 0.10 TCGA-F4-6570-01 13 109318374 109318374 G A MYO16 Missense_Mutation p.E35K 0.11 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 13 110862351 110862351 C T COL4A1 Silent p.G197G 0.51 TCGA-F4-6570-01 13 111102699 111102699 G A COL4A2 Missense_Mutation p.G413R 0.33 probably_damaging(0.999) TCGA-F4-6570-01 13 111111209 111111209 C T COL4A2 Silent p.N508N 0.56 TCGA-F4-6570-01 13 111289549 111289549 C T CARKD Silent p.G282G 0.38 TCGA-F4-6570-01 13 111294676 111294676 C A CARS2 Missense_Mutation p.G537C 0.18 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 13 111372202 111372202 A T ING1 Nonsense_Mutation p.K398* 0.12 TCGA-F4-6570-01 13 112722132 112722132 C T SOX1 Missense_Mutation p.P54S 0.16 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 13 113477720 113477720 T - ATP11A Frame_Shift_Del p.F263Lfs*15 0.20 TCGA-F4-6570-01 13 113976651 113976651 G A LAMP1 Missense_Mutation p.G390D 0.56 deleterious(0) probably_damaging(0.978) TCGA-F4-6570-01 13 114152659 114152659 A G TMCO3 Silent p.E149E 0.47 TCGA-F4-6570-01 13 21620119 21620119 C T LATS2 Missense_Mutation p.R16Q 0.10 tolerated(0.39) probably_damaging(0.994) TCGA-F4-6570-01 13 21721035 21721036 - T SAP18 Frame_Shift_Ins p.T113Yfs*4 0.22 TCGA-F4-6570-01 13 23915453 23915453 T - SACS Frame_Shift_Del p.K854Nfs*2 0.36 TCGA-F4-6570-01 13 24796999 24796999 T C SPATA13 5'UTR 0.41 TCGA-F4-6570-01 13 25478062 25478062 A C CENPJ Splice_Site p.X942_splice 0.08 TCGA-F4-6570-01 13 29599559 29599559 C T MTUS2 Missense_Mutation p.R252C 0.54 tolerated(0.3) benign(0.002) TCGA-F4-6570-01 13 36402441 36402441 C T DCLK1 Silent p.S411S 0.17 TCGA-F4-6570-01 13 36424792 36424792 T G DCLK1 Intron 0.52 TCGA-F4-6570-01 13 36776224 36776224 T - SOHLH2 Frame_Shift_Del p.I96* 0.32 TCGA-F4-6570-01 13 36801305 36801306 - G CCDC169 3'UTR 0.45 TCGA-F4-6570-01 13 37269706 37269706 A G SERTM1 3'UTR 0.21 TCGA-F4-6570-01 13 37422679 37422679 A - SMAD9 3'UTR 0.33 TCGA-F4-6570-01 13 38160306 38160306 T - POSTN Frame_Shift_Del p.R289Gfs*13 0.12 TCGA-F4-6570-01 13 38320386 38320386 G T TRPC4 Silent p.S195S 0.14 TCGA-F4-6570-01 13 39263393 39263393 C T FREM2 Nonsense_Mutation p.R638* 0.24 TCGA-F4-6570-01 13 40175230 40175230 C - LHFP Frame_Shift_Del p.V42Cfs*20 0.18 TCGA-F4-6570-01 13 41134688 41134688 G A FOXO1 Missense_Mutation p.R314C 0.16 deleterious(0) probably_damaging(0.993) TCGA-F4-6570-01 13 41495785 41495785 G A SUGT1P3 RNA 0.30 TCGA-F4-6570-01 13 41515288 41515288 G A ELF1 Missense_Mutation p.T342I 0.09 deleterious(0.04) benign(0.342) TCGA-F4-6570-01 13 46679140 46679140 T G CPB2 Missense_Mutation p.K2T 0.55 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 13 48955465 48955465 T - RB1 Frame_Shift_Del p.Y529Tfs*3 0.08 TCGA-F4-6570-01 13 49781287 49781287 T C FNDC3A Missense_Mutation p.V1118A 0.11 deleterious(0.02) benign(0.221) TCGA-F4-6570-01 13 50205562 50205562 G A ARL11 3'UTR 0.14 TCGA-F4-6570-01 13 50592589 50592589 T - KCNRG Intron 0.10 TCGA-F4-6570-01 13 58208235 58208235 G A PCDH17 Missense_Mutation p.V519M 0.31 tolerated(1) benign(0.149) TCGA-F4-6570-01 13 72440228 72440228 C G DACH1 Missense_Mutation p.G227A 0.09 probably_damaging(0.999) TCGA-F4-6570-01 13 76381723 76381723 G T LMO7 Missense_Mutation p.R202M 0.21 deleterious(0) probably_damaging(0.99) TCGA-F4-6570-01 13 88329884 88329884 C T SLITRK5 Silent p.H747H 0.29 TCGA-F4-6570-01 13 88330899 88330899 C - SLITRK5 3'UTR 0.15 TCGA-F4-6570-01 13 93879772 93879772 C T GPC6 Silent p.A21A 0.53 TCGA-F4-6570-01 13 95131263 95131263 G A DCT Missense_Mutation p.R83C 0.19 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 13 96086197 96086197 T C CLDN10 Missense_Mutation p.V37A 0.49 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 13 97485081 97485081 G A HS6ST3 Missense_Mutation p.A349T 0.19 deleterious(0.05) probably_damaging(0.99) TCGA-F4-6570-01 13 98662166 98662167 TG - IPO5 Frame_Shift_Del p.C630Qfs*25 0.10 TCGA-F4-6570-01 13 99114124 99114125 - C STK24 Frame_Shift_Ins p.S332Qfs*2 0.25 TCGA-F4-6570-01 13 99630040 99630040 G T DOCK9 Missense_Mutation p.P42T 0.14 tolerated(0.6) benign(0.004) TCGA-F4-6570-01 14 101350502 101350502 G A RTL1 Silent p.G208G 0.29 TCGA-F4-6570-01 14 102029613 102029613 G - DIO3 3'UTR 0.34 TCGA-F4-6570-01 14 102368094 102368094 C T PPP2R5C Silent p.H328H 0.23 TCGA-F4-6570-01 14 102442053 102442053 C T DYNC1H1 Silent p.D87D 0.26 TCGA-F4-6570-01 14 102516048 102516048 C T DYNC1H1 Intron 0.18 TCGA-F4-6570-01 14 102805544 102805544 G A ZNF839 Silent p.L637L 0.41 TCGA-F4-6570-01 14 102901477 102901477 G A TECPR2 Missense_Mutation p.G775R 0.31 tolerated(0.12) benign(0.028) TCGA-F4-6570-01 14 103342740 103342740 C T TRAF3 Missense_Mutation p.R150C 0.12 deleterious(0.03) probably_damaging(0.935) TCGA-F4-6570-01 14 103999006 103999006 G A TRMT61A Missense_Mutation p.R140Q 0.32 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 14 104123945 104123945 G A KLC1 Silent p.A108A 0.12 TCGA-F4-6570-01 14 105415883 105415883 G A AHNAK2 Missense_Mutation p.R1969W 0.33 benign(0.007) TCGA-F4-6570-01 14 105622208 105622208 G A JAG2 Silent p.C198C 0.32 TCGA-F4-6570-01 14 105818795 105818797 CTC - PACS2 In_Frame_Del p.S97del 0.43 TCGA-F4-6570-01 14 106174281 106174281 C T IGHA1 Missense_Mutation p.A170T 0.34 tolerated(0.08) probably_damaging(0.988) TCGA-F4-6570-01 14 106321024 106321024 T G IGHM Missense_Mutation p.K322T 0.23 tolerated(0.24) benign(0.09) TCGA-F4-6570-01 14 106667653 106667653 G A IGHV3-20 Silent p.N93N 0.27 TCGA-F4-6570-01 14 106725626 106725626 A T IGHV3-23 Missense_Mutation p.L10H 0.21 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-F4-6570-01 14 106967167 106967167 C T IGHV1-46 Missense_Mutation p.S78N 0.44 tolerated(1) benign(0.001) TCGA-F4-6570-01 14 20612565 20612565 G A OR4N5 Missense_Mutation p.R224H 0.30 tolerated(0.57) benign(0.004) TCGA-F4-6570-01 14 21499215 21499215 C T TPPP2 Missense_Mutation p.A73V 0.17 deleterious(0.02) possibly_damaging(0.548) TCGA-F4-6570-01 14 21830994 21830994 C T SUPT16H Missense_Mutation p.V542M 0.14 deleterious(0.04) possibly_damaging(0.557) TCGA-F4-6570-01 14 21862079 21862079 C T CHD8 Missense_Mutation p.A1959T 0.43 tolerated(0.48) benign(0.13) TCGA-F4-6570-01 14 21868713 21868713 G A CHD8 Nonsense_Mutation p.R1477* 0.23 TCGA-F4-6570-01 14 23240783 23240783 C T OXA1L 3'UTR 0.42 TCGA-F4-6570-01 14 23311764 23311764 G A MMP14 Missense_Mutation p.D176N 0.30 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 14 23313891 23313891 G A MMP14 Silent p.K401K 0.10 TCGA-F4-6570-01 14 23346454 23346454 T A LRP10 Silent p.A620A 0.34 TCGA-F4-6570-01 14 23443309 23443309 C T AJUBA Missense_Mutation p.V480M 0.44 deleterious(0) probably_damaging(0.963) TCGA-F4-6570-01 14 24114395 24114395 G A DHRS2 Missense_Mutation p.A263T 0.30 tolerated_low_confidence(0.13) benign(0.135) TCGA-F4-6570-01 14 24437993 24437993 C T DHRS4 Silent p.G250G 0.32 TCGA-F4-6570-01 14 24602023 24602023 G A FITM1 Silent p.K290K 0.25 TCGA-F4-6570-01 14 24619910 24619910 G A RNF31 Missense_Mutation p.R434Q 0.11 tolerated(0.21) probably_damaging(0.998) TCGA-F4-6570-01 14 24653224 24653224 G A IPO4 Missense_Mutation p.R617C 0.23 deleterious(0) possibly_damaging(0.856) TCGA-F4-6570-01 14 24877214 24877215 - C NYNRIN Frame_Shift_Ins p.G116Wfs*10 0.31 TCGA-F4-6570-01 14 31364699 31364699 G T STRN3 Nonsense_Mutation p.S771* 0.24 TCGA-F4-6570-01 14 31647372 31647372 C T HECTD1 Missense_Mutation p.A77T 0.10 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 14 32560445 32560445 A - ARHGAP5 Frame_Shift_Del p.K192Nfs*3 0.22 TCGA-F4-6570-01 14 33292717 33292717 G C AKAP6 Missense_Mutation p.E1900Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 14 35032115 35032115 C T SNX6 3'UTR 0.39 TCGA-F4-6570-01 14 36278074 36278074 A T RALGAPA1 5'UTR 0.18 TCGA-F4-6570-01 14 36337215 36337216 - A BRMS1L Frame_Shift_Ins p.D280Rfs*2 0.17 TCGA-F4-6570-01 14 44976198 44976198 C T FSCB 5'UTR 0.22 TCGA-F4-6570-01 14 51225255 51225255 G A NIN Silent p.S831S 0.34 TCGA-F4-6570-01 14 55513200 55513200 A - SOCS4 3'UTR 0.18 TCGA-F4-6570-01 14 58832319 58832319 A G ARID4A Missense_Mutation p.K1099E 0.13 deleterious(0) possibly_damaging(0.556) TCGA-F4-6570-01 14 59835461 59835461 C T DAAM1 Missense_Mutation p.R1041C 0.15 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 14 62547643 62547643 C T SYT16 Missense_Mutation p.A362V 0.14 tolerated(0.06) benign(0.008) TCGA-F4-6570-01 14 64564807 64564807 G A SYNE2 Silent p.L4083L 0.34 TCGA-F4-6570-01 14 65560458 65560458 G A MAX Missense_Mutation p.R47W 0.23 deleterious(0) probably_damaging(0.996) TCGA-F4-6570-01 14 67671667 67671667 C T FAM71D Missense_Mutation p.P258L 0.25 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-F4-6570-01 14 68273308 68273308 T C ZFYVE26 Missense_Mutation p.Y324C 0.30 deleterious(0.04) benign(0.017) TCGA-F4-6570-01 14 70170115 70170116 - C KIAA0247 Frame_Shift_Ins p.L44Pfs*33 0.31 TCGA-F4-6570-01 14 70633584 70633584 G A SLC8A3 Missense_Mutation p.A519V 0.20 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 14 72932491 72932491 G T RGS6 Missense_Mutation p.M140I 0.29 deleterious(0) benign(0.313) TCGA-F4-6570-01 14 74203710 74203710 A G ELMSAN1 Silent p.A580A 0.31 TCGA-F4-6570-01 14 74205678 74205678 C T ELMSAN1 Missense_Mutation p.R345H 0.23 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 14 74413035 74413035 C A FAM161B Missense_Mutation p.D173Y 0.29 deleterious(0) probably_damaging(0.971) TCGA-F4-6570-01 14 74756999 74756999 G A ABCD4 Missense_Mutation p.T441I 0.28 tolerated(0.27) benign(0.027) TCGA-F4-6570-01 14 74999211 74999211 C T LTBP2 Silent p.A635A 0.28 TCGA-F4-6570-01 14 75264918 75264920 CAT - YLPM1 In_Frame_Del p.S975del 0.15 TCGA-F4-6570-01 14 76045429 76045429 C T FLVCR2 Silent p.S38S 0.12 TCGA-F4-6570-01 14 77697949 77697949 C T TMEM63C Silent p.N123N 0.26 TCGA-F4-6570-01 14 77746417 77746417 G A POMT2 Missense_Mutation p.R578C 0.41 tolerated(0.18) possibly_damaging(0.453) TCGA-F4-6570-01 14 80130201 80130201 C T NRXN3 Silent p.D802D 0.33 TCGA-F4-6570-01 14 81366373 81366373 G A CEP128 Missense_Mutation p.L161F 0.20 tolerated(0.12) benign(0.035) TCGA-F4-6570-01 14 86093812 86093812 T - FLRT2 3'UTR 0.23 TCGA-F4-6570-01 14 88935420 88935420 G A PTPN21 Missense_Mutation p.S1079L 0.17 deleterious(0) possibly_damaging(0.8) TCGA-F4-6570-01 14 88946460 88946460 C T PTPN21 Missense_Mutation p.A439T 0.32 tolerated(0.05) possibly_damaging(0.777) TCGA-F4-6570-01 14 88952138 88952138 T C PTPN21 Silent p.S327S 0.23 TCGA-F4-6570-01 14 92505968 92505968 C - TRIP11 Frame_Shift_Del p.G21Afs*18 0.14 TCGA-F4-6570-01 14 93653352 93653352 A - TMEM251 3'UTR 0.15 TCGA-F4-6570-01 14 94521416 94521418 TCT - DDX24 In_Frame_Del p.K701del 0.11 TCGA-F4-6570-01 14 94526837 94526838 - A DDX24 Frame_Shift_Ins p.S507Ffs*17 0.25 TCGA-F4-6570-01 14 94776287 94776287 C T SERPINA6 Missense_Mutation p.D224N 0.28 tolerated(1) benign(0.005) TCGA-F4-6570-01 14 94929406 94929406 A G SERPINA9 3'UTR 0.09 TCGA-F4-6570-01 15 101775430 101775430 C T CHSY1 Missense_Mutation p.V225M 0.20 tolerated(0.87) benign(0.041) TCGA-F4-6570-01 15 101910642 101910642 T C PCSK6 Missense_Mutation p.E539G 0.38 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 15 20739818 20739818 T C GOLGA6L6 Silent p.E644E 0.16 TCGA-F4-6570-01 15 23812718 23812718 T G MKRN3 3'UTR 0.07 TCGA-F4-6570-01 15 24923969 24923969 C T NPAP1 Silent p.A985A 0.32 TCGA-F4-6570-01 15 24926811 24926811 T A NPAP1 3'UTR 0.26 TCGA-F4-6570-01 15 27128344 27128344 C A GABRA5 Nonsense_Mutation p.Y80* 0.28 TCGA-F4-6570-01 15 28273046 28273046 C T OCA2 Silent p.P162P 0.17 TCGA-F4-6570-01 15 28458942 28458942 C T HERC2 Silent p.V2244V 0.16 TCGA-F4-6570-01 15 31294293 31294293 A G TRPM1 Missense_Mutation p.I1554T 0.09 tolerated_low_confidence(0.47) benign(0.001) TCGA-F4-6570-01 15 31330321 31330321 G A TRPM1 Missense_Mutation p.R806C 0.29 deleterious(0) possibly_damaging(0.816) TCGA-F4-6570-01 15 34042198 34042198 G T RYR3 Missense_Mutation p.A2740S 0.34 probably_damaging(0.93) TCGA-F4-6570-01 15 34113560 34113560 C T RYR3 Silent p.S3635S 0.30 TCGA-F4-6570-01 15 34123249 34123249 C A RYR3 Missense_Mutation p.A3807E 0.36 benign(0.014) TCGA-F4-6570-01 15 34396248 34396248 C G PGBD4 Missense_Mutation p.R506G 0.30 tolerated(0.16) benign(0.001) TCGA-F4-6570-01 15 34530557 34530557 G T SLC12A6 Missense_Mutation p.A893D 0.12 deleterious(0) benign(0.412) TCGA-F4-6570-01 15 34548445 34548445 T C SLC12A6 Missense_Mutation p.N244D 0.42 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 15 38988823 38988823 G T C15orf53 Silent p.G5G 0.28 TCGA-F4-6570-01 15 39882060 39882060 G A THBS1 Missense_Mutation p.A661T 0.28 deleterious(0.01) possibly_damaging(0.876) TCGA-F4-6570-01 15 40502377 40502377 C T BUB1B Missense_Mutation p.A784V 0.31 tolerated(1) benign(0.006) TCGA-F4-6570-01 15 40599914 40599914 G T PLCB2 5'UTR 0.41 TCGA-F4-6570-01 15 40751885 40751885 G A BAHD1 Missense_Mutation p.A408T 0.26 tolerated(0.2) benign(0.002) TCGA-F4-6570-01 15 40912893 40912893 T - CASC5 Frame_Shift_Del p.S172Qfs*8 0.22 TCGA-F4-6570-01 15 40914739 40914739 G A CASC5 Silent p.E785E 0.34 TCGA-F4-6570-01 15 42152804 42152804 C A SPTBN5 Missense_Mutation p.R2656S 0.29 possibly_damaging(0.713) TCGA-F4-6570-01 15 43498613 43498613 A G EPB42 Silent p.I541I 0.18 TCGA-F4-6570-01 15 44028337 44028337 G A RNU6-354P 5'Flank 0.38 TCGA-F4-6570-01 15 44914856 44914856 A G SPG11 Intron 0.24 TCGA-F4-6570-01 15 45426457 45426457 C A DUOX1 Missense_Mutation p.P86H 0.11 deleterious(0.01) possibly_damaging(0.778) TCGA-F4-6570-01 15 45444498 45444498 G A DUOX1 Missense_Mutation p.A1070T 0.29 tolerated(0.05) benign(0.029) TCGA-F4-6570-01 15 49030559 49030560 - T CEP152 Frame_Shift_Ins p.L1674Tfs*23 0.09 TCGA-F4-6570-01 15 50595160 50595160 T G GABPB1 Missense_Mutation p.D146A 0.14 deleterious(0.03) benign(0.032) TCGA-F4-6570-01 15 50793007 50793007 G T USP50 Missense_Mutation p.H322N 0.33 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 15 51758424 51758424 A - DMXL2 Frame_Shift_Del p.S2493Qfs*21 0.27 TCGA-F4-6570-01 15 55497636 55497636 C T RAB27A 3'UTR 0.31 TCGA-F4-6570-01 15 56148330 56148330 A C NEDD4 Missense_Mutation p.V689G 0.29 deleterious(0.01) benign(0.276) TCGA-F4-6570-01 15 59064171 59064171 A G FAM63B Missense_Mutation p.S193G 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.785) TCGA-F4-6570-01 15 63358179 63358179 C T TPM1 Intron 0.40 TCGA-F4-6570-01 15 63634241 63634241 T C CA12 Missense_Mutation p.N162S 0.36 deleterious(0.01) benign(0.009) TCGA-F4-6570-01 15 63964866 63964866 T C HERC1 Missense_Mutation p.D2625G 0.36 benign(0.034) TCGA-F4-6570-01 15 64019868 64019868 C A HERC1 Missense_Mutation p.Q1108H 0.23 benign(0.168) TCGA-F4-6570-01 15 64508898 64508898 G A CSNK1G1 Nonsense_Mutation p.Q103* 0.16 TCGA-F4-6570-01 15 64966750 64966750 C - ZNF609 Frame_Shift_Del p.V569Ffs*4 0.29 TCGA-F4-6570-01 15 65157129 65157129 G A PLEKHO2 Missense_Mutation p.R172H 0.08 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 15 72642941 72642941 C A HEXA Missense_Mutation p.E241D 0.21 tolerated(0.57) benign(0.024) TCGA-F4-6570-01 15 73614903 73614903 C - HCN4 Frame_Shift_Del p.P1179Lfs*2 0.24 TCGA-F4-6570-01 15 73616570 73616570 C T HCN4 Missense_Mutation p.R668Q 0.33 deleterious(0) unknown(0) TCGA-F4-6570-01 15 74467616 74467616 C T ISLR Silent p.R139R 0.39 TCGA-F4-6570-01 15 74927900 74927900 C - EDC3 Frame_Shift_Del p.A348Lfs*10 0.10 TCGA-F4-6570-01 15 75094104 75094104 A G CSK Missense_Mutation p.N319S 0.27 deleterious(0) benign(0.388) TCGA-F4-6570-01 15 75647439 75647439 A - NEIL1 3'UTR 0.14 TCGA-F4-6570-01 15 75722649 75722649 C T SIN3A Missense_Mutation p.S23N 0.26 tolerated_low_confidence(0.48) benign(0) TCGA-F4-6570-01 15 75949507 75949507 G A SNX33 Missense_Mutation p.R559Q 0.45 tolerated(0.21) possibly_damaging(0.834) TCGA-F4-6570-01 15 75967906 75967906 G A CSPG4 Silent p.G2318G 0.29 TCGA-F4-6570-01 15 77320963 77320963 C T PSTPIP1 Silent p.S162S 0.19 TCGA-F4-6570-01 15 77328172 77328172 G A PSTPIP1 Missense_Mutation p.E339K 0.36 tolerated(0.11) benign(0.016) TCGA-F4-6570-01 15 77425854 77425854 G A PEAK1 Silent p.I1190I 0.19 TCGA-F4-6570-01 15 78211326 78211326 C A RP11-114H24.7 Intron 0.13 TCGA-F4-6570-01 15 78566575 78566575 C T DNAJA4 Missense_Mutation p.P181L 0.41 tolerated(0.09) benign(0.03) TCGA-F4-6570-01 15 79296319 79296319 G A RASGRF1 Silent p.A774A 0.29 TCGA-F4-6570-01 15 79320147 79320147 G A RASGRF1 Silent p.I439I 0.33 TCGA-F4-6570-01 15 79760758 79760758 A G KIAA1024 3'UTR 0.40 TCGA-F4-6570-01 15 81173394 81173394 T - KIAA1199 Frame_Shift_Del p.F180Lfs*44 0.28 TCGA-F4-6570-01 15 81296243 81296263 TAATTTACACTATAGAGTGAT AATTTACGCTATAGAGTGA MESDC1 3'UTR 0.15 TCGA-F4-6570-01 15 81624850 81624850 C T TMC3 Silent p.P1071P 0.21 TCGA-F4-6570-01 15 81625056 81625056 G A TMC3 Missense_Mutation p.H1003Y 0.17 tolerated_low_confidence(0.41) benign(0.112) TCGA-F4-6570-01 15 82335585 82335585 G A MEX3B Silent p.C542C 0.22 TCGA-F4-6570-01 15 82507105 82507105 C T EFTUD1 Missense_Mutation p.G568E 0.29 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 15 83481999 83481999 G A WHAMM Missense_Mutation p.V252I 0.21 tolerated(0.13) benign(0.442) TCGA-F4-6570-01 15 84651607 84651607 A C ADAMTSL3 Missense_Mutation p.K1076T 0.41 tolerated(0.08) benign(0.306) TCGA-F4-6570-01 15 85164718 85164718 C T ZSCAN2 Missense_Mutation p.S431F 0.21 deleterious(0.02) probably_damaging(0.991) TCGA-F4-6570-01 15 85383921 85383922 AC G ALPK3 Frame_Shift_Del p.T673Afs*32 0.13 TCGA-F4-6570-01 15 86311588 86311588 G A KLHL25 Missense_Mutation p.T485I 0.25 tolerated(0.61) probably_damaging(0.998) TCGA-F4-6570-01 15 89719194 89719194 C T ABHD2 Silent p.C230C 0.14 TCGA-F4-6570-01 15 89871988 89871988 C - POLG Frame_Shift_Del p.P367Lfs*3 0.26 TCGA-F4-6570-01 15 90346953 90346953 C T ANPEP Silent p.P454P 0.37 TCGA-F4-6570-01 15 91035897 91035897 A - IQGAP1 Frame_Shift_Del p.S1529Afs*10 0.15 TCGA-F4-6570-01 15 92647726 92647726 C - SLCO3A1 Frame_Shift_Del p.L323Wfs*13 0.33 TCGA-F4-6570-01 15 92706285 92706285 G A SLCO3A1 Missense_Mutation p.A685T 0.23 tolerated(0.66) benign(0.007) TCGA-F4-6570-01 15 96877529 96877529 G A NR2F2 Missense_Mutation p.A223T 0.18 tolerated(0.24) probably_damaging(0.977) TCGA-F4-6570-01 15 97326895 97326895 G A SPATA8 Missense_Mutation p.A4T 0.26 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-F4-6570-01 16 10788329 10788329 C A TEKT5 Missense_Mutation p.Q134H 0.28 deleterious(0) possibly_damaging(0.895) TCGA-F4-6570-01 16 11369790 11369790 G A PRM2 Silent p.C92C 0.31 TCGA-F4-6570-01 16 11873143 11873143 G A ZC3H7A Missense_Mutation p.S62L 0.34 deleterious(0) probably_damaging(0.966) TCGA-F4-6570-01 16 14041667 14041667 C T ERCC4 Silent p.N738N 0.10 TCGA-F4-6570-01 16 14346300 14346300 C - MKL2 Frame_Shift_Del p.R834Afs*44 0.38 TCGA-F4-6570-01 16 15502000 15502000 T - MPV17L 3'UTR 0.17 TCGA-F4-6570-01 16 1576066 1576066 G A IFT140 Nonsense_Mutation p.Q864* 0.32 TCGA-F4-6570-01 16 15917248 15917248 G A MYH11 Silent p.C122C 0.12 TCGA-F4-6570-01 16 1720721 1720721 A G CRAMP1L Missense_Mutation p.N1186D 0.32 tolerated(0.05) benign(0.062) TCGA-F4-6570-01 16 18470903 18470903 C T NPIPA7 5'Flank 0.17 TCGA-F4-6570-01 16 18820730 18820730 C T SMG1 3'UTR 0.11 TCGA-F4-6570-01 16 19127153 19127153 G A ITPRIPL2 Missense_Mutation p.G457D 0.34 deleterious(0) probably_damaging(0.992) TCGA-F4-6570-01 16 19127412 19127412 T C ITPRIPL2 3'UTR 0.24 TCGA-F4-6570-01 16 19620305 19620305 G T C16orf62 Missense_Mutation p.E386D 0.16 deleterious(0) possibly_damaging(0.832) TCGA-F4-6570-01 16 2326738 2326738 C T ABCA3 Silent p.S1684S 0.38 TCGA-F4-6570-01 16 23581820 23581820 C T UBFD1 Missense_Mutation p.T280M 0.41 deleterious(0) possibly_damaging(0.635) TCGA-F4-6570-01 16 23619229 23619229 G A PALB2 Silent p.S1102S 0.33 TCGA-F4-6570-01 16 24581189 24581189 A - RBBP6 Frame_Shift_Del p.A1062Pfs*49 0.26 TCGA-F4-6570-01 16 24788660 24788660 G A TNRC6A Silent p.Q190Q 0.25 TCGA-F4-6570-01 16 2506578 2506578 G A CCNF Missense_Mutation p.V640M 0.64 deleterious_low_confidence(0.04) benign(0.042) TCGA-F4-6570-01 16 25232875 25232875 G - AQP8 Frame_Shift_Del p.M122Cfs*10 0.20 TCGA-F4-6570-01 16 2546300 2546300 C T RP11-20I23.1 Missense_Mutation p.R51W 0.20 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 16 2546789 2546789 C T RP11-20I23.1 Missense_Mutation p.R214C 0.43 tolerated(0.1) possibly_damaging(0.886) TCGA-F4-6570-01 16 2549911 2549911 G A TBC1D24 Missense_Mutation p.G428R 0.08 deleterious(0) probably_damaging(0.988) TCGA-F4-6570-01 16 2578617 2578617 G A AMDHD2 Missense_Mutation p.D343N 0.39 tolerated(0.18) benign(0.002) TCGA-F4-6570-01 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.22 TCGA-F4-6570-01 16 27761390 27761390 G A KIAA0556 Missense_Mutation p.G1037R 0.33 deleterious(0.02) possibly_damaging(0.534) TCGA-F4-6570-01 16 28841284 28841284 C T ATXN2L Silent p.I313I 0.29 TCGA-F4-6570-01 16 28883542 28883542 C T SH2B1 Silent p.G515G 0.22 TCGA-F4-6570-01 16 29679312 29679312 C T SPN 3'UTR 0.25 TCGA-F4-6570-01 16 29821441 29821441 G A MAZ 3'UTR 0.41 TCGA-F4-6570-01 16 29855974 29855974 A G MVP Missense_Mutation p.I599V 0.33 deleterious(0.03) benign(0.062) TCGA-F4-6570-01 16 30516597 30516597 C A ITGAL Silent p.P756P 0.13 TCGA-F4-6570-01 16 30795021 30795021 C T ZNF629 Missense_Mutation p.D210N 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-F4-6570-01 16 31143479 31143479 G - PRSS8 Frame_Shift_Del p.Q295Kfs*27 0.32 TCGA-F4-6570-01 16 31448452 31448452 C T ZNF843 5'UTR 0.35 TCGA-F4-6570-01 16 31500212 31500212 T C SLC5A2 Missense_Mutation p.V431A 0.23 tolerated(0.06) possibly_damaging(0.509) TCGA-F4-6570-01 16 32893204 32893204 C T RP11-989E6.3 5'Flank 0.32 TCGA-F4-6570-01 16 3336043 3336043 C T ZNF263 Silent p.D221D 0.38 TCGA-F4-6570-01 16 3433571 3433571 G A ZSCAN32 Missense_Mutation p.P247S 0.23 tolerated(0.55) benign(0.125) TCGA-F4-6570-01 16 4016178 4016178 G A ADCY9 Silent p.G1220G 0.22 TCGA-F4-6570-01 16 48201512 48201512 C T ABCC11 Silent p.Q1317Q 0.37 TCGA-F4-6570-01 16 48204879 48204879 C A ABCC11 Splice_Site p.X1233_splice 0.32 TCGA-F4-6570-01 16 48249174 48249174 C T ABCC11 Missense_Mutation p.V345I 0.28 tolerated(0.73) benign(0.035) TCGA-F4-6570-01 16 4847246 4847246 C T ROGDI 3'UTR 0.64 TCGA-F4-6570-01 16 4934992 4934992 G A PPL Nonsense_Mutation p.R1222* 0.43 TCGA-F4-6570-01 16 50339757 50339757 C T ADCY7 Silent p.R583R 0.29 TCGA-F4-6570-01 16 50788265 50788265 T C CYLD Silent p.D281D 0.32 TCGA-F4-6570-01 16 53358450 53358450 T C CHD9 Silent p.T2763T 0.44 TCGA-F4-6570-01 16 53476704 53476704 T - RBL2 Frame_Shift_Del p.Q171Rfs*47 0.08 TCGA-F4-6570-01 16 55690726 55690726 C T SLC6A2 Silent p.N40N 0.33 TCGA-F4-6570-01 16 56969317 56969317 A - HERPUD1 Frame_Shift_Del p.K78Nfs*11 0.31 TCGA-F4-6570-01 16 57596350 57596350 G A GPR114 Missense_Mutation p.R40Q 0.28 tolerated(0.18) benign(0.032) TCGA-F4-6570-01 16 57719607 57719607 G A GPR97 Missense_Mutation p.G437S 0.23 tolerated(0.12) probably_damaging(0.921) TCGA-F4-6570-01 16 57738944 57738944 A G CCDC135 Missense_Mutation p.M286V 0.36 tolerated(0.3) benign(0.008) TCGA-F4-6570-01 16 58044016 58044016 G T USB1 Missense_Mutation p.R150I 0.19 deleterious(0) possibly_damaging(0.857) TCGA-F4-6570-01 16 58200581 58200581 C T CSNK2A2 Missense_Mutation p.R245H 0.32 deleterious(0.01) probably_damaging(0.966) TCGA-F4-6570-01 16 62055106 62055106 T A CDH8 Missense_Mutation p.M68L 0.19 tolerated(0.08) benign(0.001) TCGA-F4-6570-01 16 66511487 66511487 G A BEAN1 Missense_Mutation p.R105H 0.27 tolerated(0.32) benign(0.007) TCGA-F4-6570-01 16 67180991 67180991 C T C16orf70 Missense_Mutation p.P409L 0.15 tolerated(0.17) benign(0.076) TCGA-F4-6570-01 16 67236286 67236286 C - ELMO3 Intron 0.35 TCGA-F4-6570-01 16 67263608 67263608 C T FHOD1 Silent p.L1142L 0.08 TCGA-F4-6570-01 16 67268081 67268081 G A FHOD1 Nonsense_Mutation p.R509* 0.12 TCGA-F4-6570-01 16 67270885 67270885 G A FHOD1 Missense_Mutation p.R376C 0.41 deleterious(0.01) possibly_damaging(0.61) TCGA-F4-6570-01 16 67318765 67318765 G - PLEKHG4 Frame_Shift_Del p.L616Wfs*32 0.37 TCGA-F4-6570-01 16 67692136 67692136 C T ACD Missense_Mutation p.C406Y 0.33 deleterious(0.04) probably_damaging(0.969) TCGA-F4-6570-01 16 67762414 67762414 G A RANBP10 Silent p.S451S 0.14 TCGA-F4-6570-01 16 67762495 67762495 C T RANBP10 Intron 0.19 TCGA-F4-6570-01 16 68849625 68849625 G A CDH1 Missense_Mutation p.A510T 0.29 deleterious(0) probably_damaging(0.993) TCGA-F4-6570-01 16 69833092 69833092 G T WWP2 Missense_Mutation p.Q78H 0.28 tolerated(0.58) probably_damaging(0.993) TCGA-F4-6570-01 16 70211235 70211235 C T CLEC18C Missense_Mutation p.T103I 0.12 tolerated(0.42) benign(0.014) TCGA-F4-6570-01 16 70852425 70852425 A G HYDIN Silent p.S4826S 0.23 TCGA-F4-6570-01 16 70916787 70916787 C T HYDIN Missense_Mutation p.E3331K 0.30 benign(0.018) TCGA-F4-6570-01 16 71318558 71318558 T - CMTR2 Frame_Shift_Del p.K422Nfs*29 0.25 TCGA-F4-6570-01 16 71318570 71318570 C T CMTR2 Nonsense_Mutation p.W418* 0.28 TCGA-F4-6570-01 16 71668201 71668201 G A MARVELD3 Intron 0.16 TCGA-F4-6570-01 16 71682861 71682861 G A PHLPP2 Missense_Mutation p.R1302W 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.852) TCGA-F4-6570-01 16 75148843 75148843 C T LDHD Silent p.T117T 0.13 TCGA-F4-6570-01 16 75564412 75564412 A G CHST5 5'UTR 0.10 TCGA-F4-6570-01 16 77232113 77232113 C T MON1B Missense_Mutation p.R518W 0.29 deleterious(0.04) benign(0.103) TCGA-F4-6570-01 16 77465345 77465345 G T ADAMTS18 Silent p.P114P 0.16 TCGA-F4-6570-01 16 79634592 79634592 G A MAF 5'UTR 0.09 TCGA-F4-6570-01 16 81076085 81076085 G T ATMIN Missense_Mutation p.R221M 0.39 deleterious(0) probably_damaging(0.982) TCGA-F4-6570-01 16 81232553 81232553 G A PKD1L2 Silent p.G419G 0.22 TCGA-F4-6570-01 16 83378517 83378517 G A CDH13 Silent p.V276V 0.16 TCGA-F4-6570-01 16 84024134 84024134 G A NECAB2 Silent p.V165V 0.34 TCGA-F4-6570-01 16 85694969 85694969 G A GSE1 Missense_Mutation p.V620M 0.24 tolerated(0.15) probably_damaging(0.928) TCGA-F4-6570-01 16 87870208 87870208 C T SLC7A5 Missense_Mutation p.V396I 0.19 deleterious(0.03) benign(0.05) TCGA-F4-6570-01 16 89349019 89349019 G A ANKRD11 Nonsense_Mutation p.R1311* 0.11 TCGA-F4-6570-01 16 89986259 89986259 C T MC1R Missense_Mutation p.A198V 0.27 tolerated(0.32) benign(0.151) TCGA-F4-6570-01 16 90075268 90075268 G A DBNDD1 Silent p.T101T 0.33 TCGA-F4-6570-01 16 90110158 90110158 C A GAS8 3'UTR 0.11 TCGA-F4-6570-01 17 10310268 10310268 A G MYH8 Missense_Mutation p.L665P 0.27 deleterious(0) probably_damaging(0.996) TCGA-F4-6570-01 17 10432392 10432392 C T MYH2 Missense_Mutation p.R1120H 0.31 deleterious(0.03) probably_damaging(0.955) TCGA-F4-6570-01 17 10441152 10441152 A G MYH2 Missense_Mutation p.F473L 0.30 tolerated(0.07) benign(0.01) TCGA-F4-6570-01 17 12823131 12823131 G T ARHGAP44 Missense_Mutation p.M149I 0.31 tolerated(0.26) benign(0.378) TCGA-F4-6570-01 17 13980127 13980128 - A COX10 Frame_Shift_Ins p.T87Nfs*12 0.22 TCGA-F4-6570-01 17 15517182 15517182 C T RP11-385D13.1 Missense_Mutation p.R589H 0.07 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-F4-6570-01 17 15935761 15935761 C T NCOR1 Missense_Mutation p.R2391Q 0.20 possibly_damaging(0.536) TCGA-F4-6570-01 17 16593893 16593893 G A CCDC144A Missense_Mutation p.S60N 0.14 deleterious_low_confidence(0.01) benign(0.213) TCGA-F4-6570-01 17 17696339 17696339 G A RAI1 Missense_Mutation p.R26H 0.15 deleterious(0.02) probably_damaging(0.971) TCGA-F4-6570-01 17 17797030 17797030 G T TOM1L2 Missense_Mutation p.S104Y 0.14 tolerated(0.05) possibly_damaging(0.774) TCGA-F4-6570-01 17 17962206 17962206 T C GID4 Missense_Mutation p.Y211H 0.21 deleterious(0.03) benign(0.179) TCGA-F4-6570-01 17 18009754 18009754 G A DRG2 Missense_Mutation p.R321H 0.27 tolerated(0.41) benign(0.376) TCGA-F4-6570-01 17 18565534 18565534 G A ZNF286B Missense_Mutation p.H429Y 0.11 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 17 19619798 19619798 G T SLC47A2 Missense_Mutation p.P24H 0.35 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 17 21321987 21321987 C A KCNJ12 3'UTR 0.35 TCGA-F4-6570-01 17 21322685 21322685 T C KCNJ12 3'UTR 0.12 TCGA-F4-6570-01 17 2298257 2298257 G - MNT Frame_Shift_Del p.Q189Sfs*11 0.33 TCGA-F4-6570-01 17 26653873 26653873 G A TMEM97 3'UTR 0.50 TCGA-F4-6570-01 17 27028098 27028098 C T SUPT6H Missense_Mutation p.A1649V 0.12 tolerated(0.5) benign(0.034) TCGA-F4-6570-01 17 27068556 27068556 T G NEK8 Missense_Mutation p.C673G 0.10 deleterious(0.02) possibly_damaging(0.742) TCGA-F4-6570-01 17 27449224 27449224 C T MYO18A Silent p.T349T 0.33 TCGA-F4-6570-01 17 28417501 28417501 C T EFCAB5 Missense_Mutation p.T1249M 0.24 tolerated(0.21) probably_damaging(0.949) TCGA-F4-6570-01 17 29271968 29271968 C T ADAP2 Missense_Mutation p.A185V 0.31 tolerated(0.13) possibly_damaging(0.511) TCGA-F4-6570-01 17 2935733 2935733 G A RAP1GAP2 3'UTR 0.12 TCGA-F4-6570-01 17 29546120 29546120 C A NF1 Missense_Mutation p.A542D 0.12 deleterious(0.01) benign(0.186) TCGA-F4-6570-01 17 30815174 30815174 G A CDK5R1 Missense_Mutation p.R179H 0.26 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 17 30815677 30815678 CA - CDK5R1 3'UTR 0.18 TCGA-F4-6570-01 17 3366054 3366054 G T SPATA22 Silent p.A60A 0.13 TCGA-F4-6570-01 17 34884013 34884013 C - MYO19 Frame_Shift_Del p.S12Lfs*32 0.39 TCGA-F4-6570-01 17 34943653 34943653 C T GGNBP2 Missense_Mutation p.A623V 0.14 tolerated_low_confidence(0.16) benign(0.081) TCGA-F4-6570-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.32 TCGA-F4-6570-01 17 35545390 35545390 G A ACACA Missense_Mutation p.R1535W 0.27 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 17 36002149 36002149 C A DDX52 Silent p.T92T 0.37 TCGA-F4-6570-01 17 3628152 3628152 C T GSG2 Missense_Mutation p.A308V 0.36 tolerated(0.09) benign(0.03) TCGA-F4-6570-01 17 36508581 36508581 C A SOCS7 Missense_Mutation p.L152M 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.665) TCGA-F4-6570-01 17 36720475 36720475 G A SRCIN1 Silent p.S140S 0.40 TCGA-F4-6570-01 17 36895838 36895838 C T PCGF2 Splice_Site p.X70_splice 0.34 TCGA-F4-6570-01 17 36936725 36936725 T C PIP4K2B Missense_Mutation p.I163V 0.38 tolerated(0.15) possibly_damaging(0.842) TCGA-F4-6570-01 17 37224011 37224011 G T PLXDC1 3'UTR 0.24 TCGA-F4-6570-01 17 37686901 37686901 C - CDK12 Frame_Shift_Del p.G1271Dfs*23 0.40 TCGA-F4-6570-01 17 37898577 37898577 C T GRB7 Missense_Mutation p.P31L 0.20 tolerated_low_confidence(0.28) unknown(0) TCGA-F4-6570-01 17 38176550 38176550 G A MED24 Missense_Mutation p.R894W 0.20 deleterious(0) possibly_damaging(0.812) TCGA-F4-6570-01 17 38251797 38251797 C T NR1D1 Missense_Mutation p.S383N 0.29 tolerated(0.18) benign(0.001) TCGA-F4-6570-01 17 38447384 38447384 C - CDC6 Frame_Shift_Del p.P86Lfs*17 0.15 TCGA-F4-6570-01 17 39973353 39973353 C T FKBP10 Missense_Mutation p.R97C 0.34 deleterious(0) probably_damaging(0.996) TCGA-F4-6570-01 17 40266545 40266545 G A KAT2A Silent p.G699G 0.24 TCGA-F4-6570-01 17 40468879 40468879 G - STAT3 Frame_Shift_Del p.R729Afs*3 0.39 TCGA-F4-6570-01 17 40706441 40706441 C T HSD17B1 Silent p.C186C 0.43 TCGA-F4-6570-01 17 41179234 41179234 C A RND2 Silent p.A75A 0.11 TCGA-F4-6570-01 17 41245332 41245333 - TA BRCA1 Frame_Shift_Ins p.K739Ifs*15 0.26 TCGA-F4-6570-01 17 41836132 41836132 G A SOST 5'UTR 0.31 TCGA-F4-6570-01 17 42018261 42018261 G A PPY 3'UTR 0.08 TCGA-F4-6570-01 17 42157801 42157801 G - HDAC5 Frame_Shift_Del p.I933Lfs*14 0.40 TCGA-F4-6570-01 17 42232260 42232260 C T C17orf53 Missense_Mutation p.T534M 0.29 deleterious(0.03) benign(0.11) TCGA-F4-6570-01 17 42746927 42746927 A - C17orf104 Intron 0.21 TCGA-F4-6570-01 17 42990687 42990687 C T GFAP Missense_Mutation p.A244T 0.11 tolerated(0.45) benign(0.259) TCGA-F4-6570-01 17 43194139 43194139 G T PLCD3 Missense_Mutation p.P425T 0.22 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 17 43228367 43228367 C T HEXIM1 3'UTR 0.09 TCGA-F4-6570-01 17 44590206 44590206 T C LRRC37A2 Missense_Mutation p.V43A 0.11 tolerated(0.82) benign(0.076) TCGA-F4-6570-01 17 4462998 4462998 C T GGT6 Silent p.L66L 0.29 TCGA-F4-6570-01 17 45886353 45886353 G A OSBPL7 Missense_Mutation p.S725L 0.18 tolerated(0.06) benign(0.006) TCGA-F4-6570-01 17 46002877 46002877 G A SP2 Missense_Mutation p.E571K 0.39 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 17 4644968 4644968 G T ZMYND15 Missense_Mutation p.Q228H 0.24 deleterious_low_confidence(0.04) benign(0.03) TCGA-F4-6570-01 17 46620878 46620878 G A HOXB2 Missense_Mutation p.P208L 0.32 tolerated(0.36) benign(0.001) TCGA-F4-6570-01 17 46628160 46628160 C T HOXB3 Missense_Mutation p.A278T 0.15 tolerated(0.09) benign(0.158) TCGA-F4-6570-01 17 46700142 46700143 AG - HOXB9 3'UTR 0.34 TCGA-F4-6570-01 17 4795720 4795720 A - MINK1 Frame_Shift_Del p.I705Sfs*101 0.25 TCGA-F4-6570-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.33 TCGA-F4-6570-01 17 48545752 48545752 C - CHAD Frame_Shift_Del p.L142Cfs*42 0.30 TCGA-F4-6570-01 17 48598790 48598791 - T MYCBPAP Frame_Shift_Ins p.L426Ffs*9 0.29 TCGA-F4-6570-01 17 48626309 48626309 A G SPATA20 Missense_Mutation p.Y167C 0.12 deleterious(0.04) probably_damaging(0.925) TCGA-F4-6570-01 17 4862853 4862853 C A SPAG7 Silent p.G220G 0.21 TCGA-F4-6570-01 17 48667913 48667913 C A CACNA1G Missense_Mutation p.L795I 0.14 tolerated(0.07) probably_damaging(0.95) TCGA-F4-6570-01 17 48703471 48703471 C T CACNA1G Missense_Mutation p.R2165W 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-F4-6570-01 17 49074032 49074032 C T SPAG9 Missense_Mutation p.R621H 0.11 deleterious(0.02) benign(0.159) TCGA-F4-6570-01 17 5039115 5039115 T C USP6 Missense_Mutation p.C186R 0.42 tolerated_low_confidence(0.09) possibly_damaging(0.712) TCGA-F4-6570-01 17 5085262 5085262 T C ZNF594 Missense_Mutation p.N764D 0.14 tolerated(0.29) benign(0.036) TCGA-F4-6570-01 17 53471763 53471763 C T MMD Missense_Mutation p.A217T 0.30 tolerated(0.09) benign(0.297) TCGA-F4-6570-01 17 59761229 59761229 C T BRIP1 Missense_Mutation p.V1060I 0.30 tolerated_low_confidence(0.3) benign(0.073) TCGA-F4-6570-01 17 60032800 60032800 C T MED13 Missense_Mutation p.V1971I 0.32 deleterious(0.04) probably_damaging(0.956) TCGA-F4-6570-01 17 61899083 61899083 C A FTSJ3 Missense_Mutation p.K532N 0.10 deleterious(0.03) probably_damaging(0.959) TCGA-F4-6570-01 17 61988492 61988492 C T CSHL1 Intron 0.27 TCGA-F4-6570-01 17 62083998 62083998 G A ICAM2 Silent p.C18C 0.10 TCGA-F4-6570-01 17 67246709 67246709 A - ABCA5 Frame_Shift_Del p.L1530Wfs*5 0.20 TCGA-F4-6570-01 17 67293485 67293485 C T ABCA5 Missense_Mutation p.R428Q 0.25 tolerated(0.2) possibly_damaging(0.691) TCGA-F4-6570-01 17 6946267 6946267 C T SLC16A11 Missense_Mutation p.G134S 0.24 tolerated(1) benign(0.343) TCGA-F4-6570-01 17 694835 694835 G A RNMTL1 Missense_Mutation p.M263I 0.28 tolerated(0.18) benign(0) TCGA-F4-6570-01 17 70943929 70943929 G A SLC39A11 Missense_Mutation p.A131V 0.38 tolerated(0.32) benign(0.003) TCGA-F4-6570-01 17 71192791 71192791 A G COG1 Missense_Mutation p.H154R 0.31 tolerated(0.14) benign(0.053) TCGA-F4-6570-01 17 7139764 7139764 G - PHF23 Frame_Shift_Del p.P161Lfs*63 0.40 TCGA-F4-6570-01 17 7228547 7228547 G A NEURL4 Missense_Mutation p.R538C 0.29 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 17 72348407 72348407 C T KIF19 Silent p.Y636Y 0.36 TCGA-F4-6570-01 17 72366757 72366757 G - GPR142 Frame_Shift_Del p.C153Vfs*24 0.33 TCGA-F4-6570-01 17 7257649 7257649 T C KCTD11 3'UTR 0.30 TCGA-F4-6570-01 17 72869065 72869065 G A FDXR Missense_Mutation p.A2V 0.40 deleterious_low_confidence(0.03) benign(0.05) TCGA-F4-6570-01 17 7296783 7296783 T C TMEM256-PLSCR3 Intron 0.25 TCGA-F4-6570-01 17 73263667 73263667 G T MIF4GD Missense_Mutation p.D172E 0.15 tolerated(0.09) benign(0.168) TCGA-F4-6570-01 17 7350426 7350426 C T CHRNB1 Missense_Mutation p.R140C 0.33 tolerated(0.07) possibly_damaging(0.893) TCGA-F4-6570-01 17 73702102 73702102 G A SAP30BP Silent p.T225T 0.22 TCGA-F4-6570-01 17 73736522 73736522 C T ITGB4 Missense_Mutation p.R844C 0.40 deleterious(0) possibly_damaging(0.88) TCGA-F4-6570-01 17 73949563 73949563 C T ACOX1 Missense_Mutation p.A305T 0.10 deleterious(0.01) benign(0.03) TCGA-F4-6570-01 17 74005001 74005001 G T EVPL Missense_Mutation p.R1429S 0.26 tolerated(0.07) possibly_damaging(0.681) TCGA-F4-6570-01 17 7495923 7495923 G T FXR2 Intron 0.38 TCGA-F4-6570-01 17 76970770 76970770 C T LGALS3BP Missense_Mutation p.E126K 0.20 tolerated(0.32) benign(0.012) TCGA-F4-6570-01 17 77043723 77043723 C A C1QTNF1 Silent p.S133S 0.28 TCGA-F4-6570-01 17 7749596 7749596 G A KDM6B Missense_Mutation p.R146H 0.22 unknown(0) TCGA-F4-6570-01 17 77768655 77768655 C T CBX8 Missense_Mutation p.G317R 0.29 tolerated(0.67) benign(0.061) TCGA-F4-6570-01 17 77808625 77808625 G A CBX4 Silent p.N272N 0.31 TCGA-F4-6570-01 17 79655789 79655789 C T HGS Missense_Mutation p.A116V 0.34 deleterious(0) benign(0.042) TCGA-F4-6570-01 17 7976248 7976248 C T ALOX12B Silent p.P649P 0.33 TCGA-F4-6570-01 17 8020192 8020192 C T ALOXE3 Missense_Mutation p.S217N 0.19 tolerated(0.52) benign(0.288) TCGA-F4-6570-01 17 9515746 9515746 G A WDR16 Silent p.T325T 0.18 TCGA-F4-6570-01 17 9578225 9578225 C A USP43 Missense_Mutation p.P253H 0.11 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 17 9862623 9862623 T - GAS7 Intron 0.24 TCGA-F4-6570-01 18 12009902 12009902 C T IMPA2 Missense_Mutation p.A84V 0.13 tolerated(1) benign(0.006) TCGA-F4-6570-01 18 18531224 18531224 C G ROCK1 3'UTR 0.42 TCGA-F4-6570-01 18 18534813 18534813 G A ROCK1 Nonsense_Mutation p.R1262* 0.25 TCGA-F4-6570-01 18 19995559 19995559 A - CTAGE1 Frame_Shift_Del p.F739Sfs*17 0.19 TCGA-F4-6570-01 18 21427491 21427491 C T LAMA3 Missense_Mutation p.T1332M 0.22 probably_damaging(0.987) TCGA-F4-6570-01 18 25591889 25591889 C A CDH2 Missense_Mutation p.R156M 0.18 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 18 260205 260205 T - THOC1 Frame_Shift_Del p.N119Mfs*26 0.31 TCGA-F4-6570-01 18 2718224 2718224 A - SMCHD1 Frame_Shift_Del p.M779Wfs*12 0.30 TCGA-F4-6570-01 18 29617157 29617159 AGA - RNF125 In_Frame_Del p.E82del 0.35 TCGA-F4-6570-01 18 32826115 32826115 G A ZNF397 Silent p.Q482Q 0.31 TCGA-F4-6570-01 18 33877916 33877916 G A FHOD3 Missense_Mutation p.G40S 0.38 tolerated(0.51) probably_damaging(0.995) TCGA-F4-6570-01 18 34298575 34298575 G A FHOD3 Missense_Mutation p.R930H 0.24 tolerated(0.57) benign(0.005) TCGA-F4-6570-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.09 TCGA-F4-6570-01 18 43671739 43671739 C T ATP5A1 Missense_Mutation p.R73H 0.31 tolerated_low_confidence(0.06) benign(0.028) TCGA-F4-6570-01 18 44113144 44113144 T G LOXHD1 Missense_Mutation p.E341D 0.31 tolerated(0.06) probably_damaging(0.989) TCGA-F4-6570-01 18 45371636 45371636 A G SMAD2 Intron 0.28 TCGA-F4-6570-01 18 47318615 47318615 G A ACAA2 Silent p.D220D 0.25 TCGA-F4-6570-01 18 47421415 47421415 G A MYO5B Silent p.L981L 0.12 TCGA-F4-6570-01 18 47500841 47500841 G A MYO5B Missense_Mutation p.R401C 0.12 deleterious(0) probably_damaging(0.992) TCGA-F4-6570-01 18 47797748 47797748 T C MBD1 Intron 0.32 TCGA-F4-6570-01 18 50731650 50731650 T C DCC Silent p.I546I 0.27 TCGA-F4-6570-01 18 51025743 51025743 A T DCC Missense_Mutation p.E1325V 0.17 deleterious(0.01) benign(0.371) TCGA-F4-6570-01 18 5291559 5291559 G A ZBTB14 Silent p.Y216Y 0.21 TCGA-F4-6570-01 18 58039865 58039865 A C MC4R 5'UTR 0.09 TCGA-F4-6570-01 18 5891806 5891806 C - TMEM200C Frame_Shift_Del p.G86Vfs*176 0.28 TCGA-F4-6570-01 18 59195230 59195230 A G CDH20 Missense_Mutation p.T350A 0.31 deleterious(0.02) benign(0.052) TCGA-F4-6570-01 18 61570323 61570323 G A SERPINB2 Silent p.S344S 0.17 TCGA-F4-6570-01 18 63526278 63526278 G T CDH7 Missense_Mutation p.G497V 0.30 deleterious(0) possibly_damaging(0.884) TCGA-F4-6570-01 18 65182278 65182278 T C DSEL 5'UTR 0.14 TCGA-F4-6570-01 18 67563118 67563118 G A CD226 Silent p.V182V 0.11 TCGA-F4-6570-01 18 7032079 7032079 G A LAMA1 Missense_Mutation p.H754Y 0.08 tolerated(1) possibly_damaging(0.811) TCGA-F4-6570-01 18 7080342 7080342 C T LAMA1 Missense_Mutation p.R59Q 0.18 tolerated(0.83) possibly_damaging(0.627) TCGA-F4-6570-01 18 72103727 72103728 AG - FAM69C 3'UTR 0.19 TCGA-F4-6570-01 18 74639076 74639076 G C ZNF236 Missense_Mutation p.V1369L 0.32 tolerated(0.11) possibly_damaging(0.78) TCGA-F4-6570-01 18 76754306 76754306 C T SALL3 Missense_Mutation p.P772L 0.33 deleterious(0.02) possibly_damaging(0.475) TCGA-F4-6570-01 18 77193683 77193683 C T NFATC1 Missense_Mutation p.T431M 0.31 deleterious(0) probably_damaging(0.969) TCGA-F4-6570-01 18 77227559 77227559 G A NFATC1 Missense_Mutation p.R677H 0.14 tolerated(1) benign(0.006) TCGA-F4-6570-01 18 77894791 77894791 C - ADNP2 Frame_Shift_Del p.P500Qfs*7 0.22 TCGA-F4-6570-01 18 8113645 8113645 C T PTPRM Missense_Mutation p.A673V 0.35 tolerated(0.33) benign(0.009) TCGA-F4-6570-01 18 8253302 8253302 G A PTPRM Missense_Mutation p.V882M 0.23 tolerated(0.33) benign(0.016) TCGA-F4-6570-01 18 9914333 9914333 G A VAPA Splice_Site p.X27_splice 0.21 TCGA-F4-6570-01 19 10434065 10434065 C T RAVER1 Missense_Mutation p.A329T 0.56 deleterious(0) benign(0.117) TCGA-F4-6570-01 19 1055192 1055192 G A ABCA7 Silent p.R1349R 0.23 TCGA-F4-6570-01 19 10748564 10748564 G A SLC44A2 Silent p.S576S 0.32 TCGA-F4-6570-01 19 10923025 10923025 A G DNM2 Missense_Mutation p.E548G 0.22 deleterious(0.01) possibly_damaging(0.62) TCGA-F4-6570-01 19 11328012 11328012 G A DOCK6 Silent p.G1202G 0.11 TCGA-F4-6570-01 19 1230942 1230942 C T C19orf26 Missense_Mutation p.A438T 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.908) TCGA-F4-6570-01 19 12511914 12511914 C A ZNF799 5'UTR 0.26 TCGA-F4-6570-01 19 12511916 12511916 G C ZNF799 5'UTR 0.29 TCGA-F4-6570-01 19 12511920 12511920 G A ZNF799 5'UTR 0.35 TCGA-F4-6570-01 19 12816128 12816128 C T TNPO2 Missense_Mutation p.E650K 0.11 deleterious(0.04) possibly_damaging(0.804) TCGA-F4-6570-01 19 12841843 12841843 C T C19orf43 Missense_Mutation p.A155T 0.22 deleterious(0.01) probably_damaging(0.918) TCGA-F4-6570-01 19 13084476 13084476 G T DAND5 3'UTR 0.21 TCGA-F4-6570-01 19 13264972 13264974 CTT - IER2 3'UTR 0.35 TCGA-F4-6570-01 19 13340948 13340948 G - CACNA1A Frame_Shift_Del p.H1826Tfs*30 0.38 TCGA-F4-6570-01 19 13410062 13410062 G A CACNA1A Silent p.N795N 0.17 TCGA-F4-6570-01 19 13988290 13988290 G A NANOS3 Silent p.L76L 0.37 TCGA-F4-6570-01 19 14162426 14162426 C A IL27RA Silent p.T512T 0.35 TCGA-F4-6570-01 19 15338298 15338298 G - EPHX3 Frame_Shift_Del p.Q345Rfs*51 0.28 TCGA-F4-6570-01 19 15483031 15483031 T - AKAP8 Frame_Shift_Del p.N330Mfs*38 0.25 TCGA-F4-6570-01 19 15535691 15535691 G A WIZ Missense_Mutation p.R588W 0.10 deleterious(0) probably_damaging(0.947) TCGA-F4-6570-01 19 1578477 1578477 G A MBD3 Silent p.D246D 0.22 TCGA-F4-6570-01 19 16631648 16631650 CTC - CHERP In_Frame_Del p.E730del 0.27 TCGA-F4-6570-01 19 16910915 16910915 C T NWD1 Silent p.Y1226Y 0.30 TCGA-F4-6570-01 19 17329240 17329240 C T USE1 Intron 0.15 TCGA-F4-6570-01 19 17611587 17611587 G A SLC27A1 Missense_Mutation p.R513H 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 19 1811706 1811706 C T ATP8B3 Silent p.R10R 0.27 TCGA-F4-6570-01 19 18879553 18879554 - C CRTC1 Frame_Shift_Ins p.E443Rfs*24 0.16 TCGA-F4-6570-01 19 18979510 18979510 G A GDF1 Missense_Mutation p.P339S 0.43 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 19 19010434 19010434 G A COPE 3'UTR 0.35 TCGA-F4-6570-01 19 19105137 19105137 G A SUGP2 3'UTR 0.16 TCGA-F4-6570-01 19 19339168 19339168 T C NCAN Silent p.A913A 0.09 TCGA-F4-6570-01 19 19616216 19616216 G A GATAD2A Missense_Mutation p.R612H 0.37 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 19 19638915 19638915 G A NDUFA13 Missense_Mutation p.G139S 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.587) TCGA-F4-6570-01 19 2110734 2110734 G A AP3D1 Silent p.G1049G 0.47 TCGA-F4-6570-01 19 21300201 21300201 C T ZNF714 Missense_Mutation p.T244I 0.19 deleterious(0.02) possibly_damaging(0.737) TCGA-F4-6570-01 19 21934230 21934230 A G ZNF100 Intron 0.16 TCGA-F4-6570-01 19 21991567 21991567 T C ZNF43 Silent p.K424K 0.26 TCGA-F4-6570-01 19 2291264 2291264 G A LINGO3 Missense_Mutation p.A171V 0.30 tolerated(0.43) benign(0.025) TCGA-F4-6570-01 19 2430720 2430720 G A LMNB2 3'UTR 0.27 TCGA-F4-6570-01 19 2520634 2520634 C T GNG7 Missense_Mutation p.R18H 0.10 deleterious(0) probably_damaging(0.995) TCGA-F4-6570-01 19 2834308 2834308 C T ZNF554 Nonsense_Mutation p.R359* 0.39 TCGA-F4-6570-01 19 30314609 30314609 T C CCNE1 Silent p.A386A 0.10 TCGA-F4-6570-01 19 32844624 32844624 T A ZNF507 Silent p.A296A 0.25 TCGA-F4-6570-01 19 33464997 33464997 A - C19orf40 Frame_Shift_Del p.T94Pfs*3 0.33 TCGA-F4-6570-01 19 34292219 34292219 G A KCTD15 Missense_Mutation p.A72T 0.15 tolerated(0.17) possibly_damaging(0.685) TCGA-F4-6570-01 19 34884959 34884959 G A GPI Silent p.A361A 0.51 TCGA-F4-6570-01 19 35616130 35616130 G T LGI4 Silent p.I527I 0.22 TCGA-F4-6570-01 19 36029509 36029509 G A GAPDHS Missense_Mutation p.G125S 0.36 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-F4-6570-01 19 36048722 36048722 G A ATP4A Missense_Mutation p.R510W 0.44 deleterious(0.01) possibly_damaging(0.634) TCGA-F4-6570-01 19 3624009 3624009 G A CACTIN Missense_Mutation p.R107C 0.40 deleterious_low_confidence(0) unknown(0) TCGA-F4-6570-01 19 36303560 36303560 G A PRODH2 Missense_Mutation p.P126S 0.25 tolerated(0.1) probably_damaging(0.979) TCGA-F4-6570-01 19 36394697 36394698 CT - HCST Frame_Shift_Del p.L47Afs*10 0.16 TCGA-F4-6570-01 19 36517492 36517492 C T CLIP3 Silent p.P186P 0.39 TCGA-F4-6570-01 19 36523197 36523197 C A CLIP3 Missense_Mutation p.E21D 0.14 tolerated_low_confidence(0.18) unknown(0) TCGA-F4-6570-01 19 36633602 36633602 G A CAPNS1 Missense_Mutation p.V98I 0.38 tolerated(0.52) benign(0.009) TCGA-F4-6570-01 19 36640790 36640790 T C CAPNS1 3'UTR 0.36 TCGA-F4-6570-01 19 37310083 37310083 T C ZNF790 Missense_Mutation p.H388R 0.35 deleterious(0) probably_damaging(0.975) TCGA-F4-6570-01 19 3735574 3735574 C T TJP3 Missense_Mutation p.R342W 0.16 deleterious(0) possibly_damaging(0.84) TCGA-F4-6570-01 19 37441799 37441799 G - ZNF568 Frame_Shift_Del p.E583Rfs*23 0.21 TCGA-F4-6570-01 19 37677177 37677177 C T ZNF585B Missense_Mutation p.R421Q 0.14 tolerated(1) benign(0) TCGA-F4-6570-01 19 37677179 37677179 G A ZNF585B Silent p.I420I 0.14 TCGA-F4-6570-01 19 37697955 37697955 C T CTC-454I21.3 Missense_Mutation p.G8D 0.30 tolerated(0.4) benign(0.023) TCGA-F4-6570-01 19 38385434 38385434 A G WDR87 Silent p.S264S 0.20 TCGA-F4-6570-01 19 38600934 38600934 C T SIPA1L3 Missense_Mutation p.P734L 0.27 deleterious(0) probably_damaging(0.995) TCGA-F4-6570-01 19 38713025 38713025 G - DPF1 Frame_Shift_Del p.R118Dfs*15 0.52 TCGA-F4-6570-01 19 38995451 38995451 C - RYR1 Frame_Shift_Del p.D2713Tfs*33 0.40 TCGA-F4-6570-01 19 39026022 39026022 C T RYR1 Nonsense_Mutation p.Q3836* 0.23 TCGA-F4-6570-01 19 39055679 39055679 T C RYR1 Silent p.S4235S 0.53 TCGA-F4-6570-01 19 39297228 39297230 ACC - LGALS4 In_Frame_Del p.V116del 0.34 TCGA-F4-6570-01 19 39663674 39663674 G A PAK4 Silent p.P107P 0.32 TCGA-F4-6570-01 19 39826151 39826151 G A GMFG Silent p.C8C 0.17 TCGA-F4-6570-01 19 39877361 39877361 G A PAF1 Silent p.D355D 0.37 TCGA-F4-6570-01 19 39908648 39908648 G A PLEKHG2 Missense_Mutation p.R329Q 0.23 deleterious_low_confidence(0) benign(0.246) TCGA-F4-6570-01 19 39915788 39915788 G T PLEKHG2 Missense_Mutation p.V1339F 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F4-6570-01 19 39998563 39998563 G A DLL3 Silent p.T589T 0.21 TCGA-F4-6570-01 19 40408668 40408668 C T FCGBP Missense_Mutation p.G1391R 0.30 probably_damaging(1) TCGA-F4-6570-01 19 40590694 40590694 C G ZNF780A 5'UTR 0.33 TCGA-F4-6570-01 19 40788531 40788531 T C AKT2 Intron 0.10 TCGA-F4-6570-01 19 407912 407912 G A C2CD4C Silent p.F150F 0.33 TCGA-F4-6570-01 19 41209478 41209478 G A ADCK4 Missense_Mutation p.A256V 0.30 tolerated(0.06) possibly_damaging(0.745) TCGA-F4-6570-01 19 41884185 41884185 G A TMEM91 Splice_Site 0.11 TCGA-F4-6570-01 19 42265981 42265981 T A CEACAM6 Missense_Mutation p.S270T 0.29 tolerated(0.1) probably_damaging(0.952) TCGA-F4-6570-01 19 42400518 42400518 C T ARHGEF1 Missense_Mutation p.P377S 0.54 tolerated(0.12) benign(0.281) TCGA-F4-6570-01 19 42563653 42563653 G A GRIK5 Missense_Mutation p.R179C 0.33 deleterious(0) possibly_damaging(0.865) TCGA-F4-6570-01 19 42752691 42752691 G - ERF Frame_Shift_Del p.L525Sfs*6 0.21 TCGA-F4-6570-01 19 42909650 42909650 C T LIPE Missense_Mutation p.R810Q 0.19 tolerated(0.28) benign(0.01) TCGA-F4-6570-01 19 44131345 44131345 G T CADM4 Missense_Mutation p.H113N 0.21 tolerated(0.14) benign(0.282) TCGA-F4-6570-01 19 44933418 44933418 C T ZNF229 Missense_Mutation p.G513E 0.20 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 19 4512131 4512131 C A PLIN4 Missense_Mutation p.G600V 0.35 deleterious(0) probably_damaging(0.984) TCGA-F4-6570-01 19 45262873 45262873 G - BCL3 3'UTR 0.25 TCGA-F4-6570-01 19 45656447 45656447 C T NKPD1 Silent p.S416S 0.18 TCGA-F4-6570-01 19 45662262 45662262 C T NKPD1 Missense_Mutation p.S63N 0.21 tolerated_low_confidence(0.4) benign(0.025) TCGA-F4-6570-01 19 46268851 46268851 C T SIX5 Missense_Mutation p.A710T 0.18 tolerated(0.05) benign(0.008) TCGA-F4-6570-01 19 46464368 46464368 C T NOVA2 Silent p.A43A 0.36 TCGA-F4-6570-01 19 46521700 46521700 G - CCDC61 3'UTR 0.30 TCGA-F4-6570-01 19 46893565 46893565 G A PPP5C Missense_Mutation p.A488T 0.08 deleterious(0) benign(0.169) TCGA-F4-6570-01 19 46997924 46997924 C T PNMAL2 Missense_Mutation p.E267K 0.26 tolerated(0.05) possibly_damaging(0.719) TCGA-F4-6570-01 19 47910354 47910354 C T MEIS3 Missense_Mutation p.D372N 0.24 deleterious(0.01) benign(0.129) TCGA-F4-6570-01 19 47951365 47951365 G A SLC8A2 Silent p.G488G 0.20 TCGA-F4-6570-01 19 47979893 47979893 G A KPTN Missense_Mutation p.R360W 0.17 deleterious(0.03) benign(0.135) TCGA-F4-6570-01 19 47981003 47981003 C T KPTN Missense_Mutation p.V275M 0.30 deleterious(0.03) benign(0.409) TCGA-F4-6570-01 19 47986795 47986795 G - KPTN Frame_Shift_Del p.K92Sfs*22 0.41 TCGA-F4-6570-01 19 48182685 48182685 G A GLTSCR1 Silent p.A86A 0.41 TCGA-F4-6570-01 19 48956285 48956285 C T GRWD1 3'UTR 0.42 TCGA-F4-6570-01 19 49002400 49002400 C T LMTK3 Silent p.E671E 0.15 TCGA-F4-6570-01 19 49173996 49173996 C T NTN5 Missense_Mutation p.C83Y 0.30 deleterious(0) possibly_damaging(0.855) TCGA-F4-6570-01 19 49442857 49442857 C G DHDH Missense_Mutation p.A173G 0.21 tolerated(0.53) benign(0) TCGA-F4-6570-01 19 49519541 49519541 C T LHB Silent p.P70P 0.40 TCGA-F4-6570-01 19 49963099 49963099 C T ALDH16A1 Missense_Mutation p.P165S 0.34 tolerated(0.06) probably_damaging(0.96) TCGA-F4-6570-01 19 50154316 50154316 C T SCAF1 Nonsense_Mutation p.R224* 0.21 TCGA-F4-6570-01 19 50393156 50393156 G A IL4I1 Missense_Mutation p.T514M 0.37 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 19 50436244 50436244 C T ATF5 Silent p.R248R 0.28 TCGA-F4-6570-01 19 50919935 50919935 C T POLD1 Missense_Mutation p.R1008C 0.40 deleterious(0) possibly_damaging(0.836) TCGA-F4-6570-01 19 51220187 51220187 C T SHANK1 5'UTR 0.58 TCGA-F4-6570-01 19 51329967 51329967 C T KLK15 Silent p.S176S 0.22 TCGA-F4-6570-01 19 51503326 51503326 C T KLK8 Missense_Mutation p.S185N 0.17 tolerated(1) benign(0.002) TCGA-F4-6570-01 19 51519274 51519274 G A KLK10 Silent p.H136H 0.10 TCGA-F4-6570-01 19 51986571 51986571 G A CEACAM18 Missense_Mutation p.G386D 0.16 deleterious_low_confidence(0.04) benign(0.234) TCGA-F4-6570-01 19 5214592 5214592 G A PTPRS Missense_Mutation p.R1492W 0.35 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 19 5231449 5231449 G - PTPRS Frame_Shift_Del p.P676Rfs*134 0.24 TCGA-F4-6570-01 19 53013987 53013987 A - ZNF578 Frame_Shift_Del p.D120Mfs*16 0.31 TCGA-F4-6570-01 19 53014503 53014503 A G ZNF578 Missense_Mutation p.N290S 0.40 tolerated(0.08) benign(0.173) TCGA-F4-6570-01 19 53343956 53343956 T A ZNF468 3'UTR 0.36 TCGA-F4-6570-01 19 53762164 53762164 G A VN1R2 Missense_Mutation p.S179N 0.27 tolerated(0.06) possibly_damaging(0.845) TCGA-F4-6570-01 19 54074879 54074879 G A ZNF331 Missense_Mutation p.V11I 0.24 deleterious(0.01) probably_damaging(0.939) TCGA-F4-6570-01 19 54140024 54140024 G A DPRX Missense_Mutation p.V120M 0.25 deleterious(0) probably_damaging(0.921) TCGA-F4-6570-01 19 54313767 54313767 C T NLRP12 Silent p.E382E 0.17 TCGA-F4-6570-01 19 54401306 54401306 C T PRKCG Missense_Mutation p.R345C 0.09 deleterious(0.01) possibly_damaging(0.772) TCGA-F4-6570-01 19 54579163 54579163 G A TARM1 Silent p.C14C 0.17 TCGA-F4-6570-01 19 54848197 54848197 C T LILRA4 Silent p.A390A 0.27 TCGA-F4-6570-01 19 54963438 54963438 T C LENG8 Silent p.S69S 0.32 TCGA-F4-6570-01 19 54973999 54973999 C T LENG9 Silent p.V259V 0.14 TCGA-F4-6570-01 19 55175848 55175849 - G LILRB4 Frame_Shift_Ins p.T192Dfs*20 0.27 TCGA-F4-6570-01 19 55549613 55549613 A G GP6 5'UTR 0.31 TCGA-F4-6570-01 19 55594760 55594760 C T EPS8L1 Missense_Mutation p.P410L 0.24 tolerated(0.17) benign(0.002) TCGA-F4-6570-01 19 55966630 55966630 C T ISOC2 Missense_Mutation p.R155H 0.29 deleterious(0.02) benign(0.235) TCGA-F4-6570-01 19 55995152 55995152 G A ZNF628 Silent p.T864T 0.23 TCGA-F4-6570-01 19 56307597 56307597 G A NLRP11 Nonsense_Mutation p.R731* 0.26 TCGA-F4-6570-01 19 56895990 56895990 G A ZNF582 Nonsense_Mutation p.R266* 0.24 TCGA-F4-6570-01 19 57640238 57640239 - A USP29 Frame_Shift_Ins p.R68Kfs*18 0.30 TCGA-F4-6570-01 19 5770965 5770965 G A CATSPERD Missense_Mutation p.D549N 0.30 tolerated(0.07) possibly_damaging(0.867) TCGA-F4-6570-01 19 578092 578092 G A BSG Missense_Mutation p.R129H 0.25 tolerated(0.05) benign(0.016) TCGA-F4-6570-01 19 57955702 57955702 A G ZNF749 Missense_Mutation p.T396A 0.37 tolerated(0.57) possibly_damaging(0.874) TCGA-F4-6570-01 19 57985284 57985284 G A ZNF772 Silent p.S276S 0.32 TCGA-F4-6570-01 19 58084718 58084718 C T ZNF416 Missense_Mutation p.G185D 0.30 tolerated(0.24) benign(0.008) TCGA-F4-6570-01 19 58238988 58238988 G A ZNF671 5'UTR 0.30 TCGA-F4-6570-01 19 58265916 58265916 G A ZNF776 Missense_Mutation p.G473D 0.19 tolerated(0.05) benign(0.109) TCGA-F4-6570-01 19 58773791 58773791 A G ZNF544 Missense_Mutation p.N607D 0.27 tolerated(0.06) benign(0.185) TCGA-F4-6570-01 19 58928897 58928897 C T ZNF584 Missense_Mutation p.R338C 0.33 deleterious(0.01) probably_damaging(0.92) TCGA-F4-6570-01 19 58966528 58966528 A G ZNF324B Intron 0.28 TCGA-F4-6570-01 19 5951587 5951588 - T RANBP3 Frame_Shift_Ins p.N33Kfs*14 0.32 TCGA-F4-6570-01 19 608171 608171 T C HCN2 Missense_Mutation p.Y476H 0.43 deleterious(0) possibly_damaging(0.735) TCGA-F4-6570-01 19 623496 623496 G A POLRMT Silent p.S416S 0.17 TCGA-F4-6570-01 19 6416530 6416530 C T KHSRP Missense_Mutation p.A487T 0.23 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 19 6432082 6432082 T C SLC25A41 Missense_Mutation p.D114G 0.24 deleterious(0) possibly_damaging(0.908) TCGA-F4-6570-01 19 6495166 6495166 G A TUBB4A 3'UTR 0.19 TCGA-F4-6570-01 19 6534675 6534675 G - TNFSF9 Frame_Shift_Del p.G123Afs*2 0.44 TCGA-F4-6570-01 19 6736657 6736657 C A GPR108 Silent p.V62V 0.24 TCGA-F4-6570-01 19 6822322 6822322 G A VAV1 Silent p.S180S 0.51 TCGA-F4-6570-01 19 7570856 7570856 C - C19orf45 Frame_Shift_Del p.P339Rfs*18 0.27 TCGA-F4-6570-01 19 7592774 7592774 C T MCOLN1 Silent p.F235F 0.33 TCGA-F4-6570-01 19 8160343 8160343 C A FBN3 Missense_Mutation p.G1901C 0.13 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 19 8175743 8175743 C - FBN3 Frame_Shift_Del p.G1440Vfs*14 0.36 TCGA-F4-6570-01 19 8620544 8620544 A G MYO1F Missense_Mutation p.F47S 0.29 deleterious(0) probably_damaging(0.93) TCGA-F4-6570-01 19 9577432 9577432 C T ZNF560 Missense_Mutation p.V731M 0.19 tolerated(0.83) probably_damaging(0.961) TCGA-F4-6570-01 1 10209327 10209327 T - UBE4B Frame_Shift_Del p.F894Lfs*19 0.17 TCGA-F4-6570-01 1 10384905 10384905 G A KIF1B Missense_Mutation p.G830D 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-F4-6570-01 1 10708092 10708092 G A CASZ1 Missense_Mutation p.P1088L 0.17 deleterious(0) benign(0.028) TCGA-F4-6570-01 1 10720567 10720567 C T CASZ1 Missense_Mutation p.A178T 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F4-6570-01 1 109242140 109242140 A G PRPF38B Missense_Mutation p.K380R 0.20 tolerated(0.82) unknown(0) TCGA-F4-6570-01 1 109321907 109321907 G T STXBP3 Splice_Site p.X229_splice 0.11 TCGA-F4-6570-01 1 109734346 109734346 A C KIAA1324 Splice_Site p.X516_splice 0.31 TCGA-F4-6570-01 1 111737281 111737281 C T DENND2D Missense_Mutation p.C238Y 0.19 deleterious(0.03) probably_damaging(0.93) TCGA-F4-6570-01 1 111857907 111857907 T C CHIA Silent p.V110V 0.29 TCGA-F4-6570-01 1 11190824 11190824 G A MTOR Missense_Mutation p.A1792V 0.36 deleterious(0.01) benign(0.435) TCGA-F4-6570-01 1 112042693 112042693 G T ADORA3 Intron 0.26 TCGA-F4-6570-01 1 112524506 112524506 G A KCND3 Silent p.D281D 0.40 TCGA-F4-6570-01 1 112958798 112958798 A - CTTNBP2NL Frame_Shift_Del p.K5Nfs*8 0.30 TCGA-F4-6570-01 1 113238788 113238788 G A MOV10 Missense_Mutation p.A600T 0.08 tolerated(0.35) benign(0.017) TCGA-F4-6570-01 1 113637348 113637349 - T LRIG2 Frame_Shift_Ins p.G261Wfs*4 0.26 TCGA-F4-6570-01 1 115128054 115128054 A T DENND2C 3'UTR 0.35 TCGA-F4-6570-01 1 11585247 11585247 G A PTCHD2 Missense_Mutation p.V831M 0.34 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-F4-6570-01 1 116676081 116676081 G T MAB21L3 3'UTR 0.19 TCGA-F4-6570-01 1 1170006 1170006 G A B3GALT6 3'UTR 0.22 TCGA-F4-6570-01 1 117087061 117087061 T - CD58 Frame_Shift_Del p.N79Ifs*5 0.19 TCGA-F4-6570-01 1 117159045 117159045 C A IGSF3 Missense_Mutation p.Q26H 0.24 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 117661060 117661060 A T TRIM45 Missense_Mutation p.V273E 0.21 deleterious(0) possibly_damaging(0.899) TCGA-F4-6570-01 1 117699582 117699582 C A VTCN1 Intron 0.32 TCGA-F4-6570-01 1 12023612 12023612 G A PLOD1 Missense_Mutation p.S374N 0.19 tolerated(0.56) benign(0) TCGA-F4-6570-01 1 120506309 120506309 G A NOTCH2 Silent p.G601G 0.22 TCGA-F4-6570-01 1 12359388 12359388 A - VPS13D Frame_Shift_Del p.N2056Ifs*33 0.26 TCGA-F4-6570-01 1 12382625 12382625 C A VPS13D Silent p.S2579S 0.30 TCGA-F4-6570-01 1 12776133 12776133 T C AADACL3 5'Flank 0.40 TCGA-F4-6570-01 1 12939672 12939672 C T PRAMEF4 Missense_Mutation p.S377N 0.28 deleterious(0.04) benign(0.088) TCGA-F4-6570-01 1 12952856 12952856 C T PRAMEF10 Missense_Mutation p.R439H 0.20 tolerated(0.08) benign(0.065) TCGA-F4-6570-01 1 144598692 144598692 G A RP11-640M9.2 RNA 0.11 TCGA-F4-6570-01 1 145248825 145248825 G A NOTCH2NL 5'UTR 0.08 TCGA-F4-6570-01 1 145473439 145473439 G - ANKRD34A Frame_Shift_Del p.E39Rfs*4 0.28 TCGA-F4-6570-01 1 146680498 146680498 C T FMO5 Missense_Mutation p.G249D 0.33 deleterious(0) benign(0.297) TCGA-F4-6570-01 1 146747130 146747133 AAGT - CHD1L Splice_Site p.X462_splice 0.15 TCGA-F4-6570-01 1 147095924 147095926 CAG - BCL9 In_Frame_Del p.Q1150del 0.35 TCGA-F4-6570-01 1 149900796 149900796 A - MTMR11 3'UTR 0.24 TCGA-F4-6570-01 1 150039916 150039916 T C VPS45 Translation_Start_Site p.M1? 0.22 deleterious(0) probably_damaging(0.994) TCGA-F4-6570-01 1 150477165 150477165 G A TARS2 Silent p.V592V 0.26 TCGA-F4-6570-01 1 150737124 150737124 T C CTSS Missense_Mutation p.Y39C 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-F4-6570-01 1 151318748 151318748 C G RFX5 Missense_Mutation p.A17P 0.32 tolerated_low_confidence(0.11) benign(0.004) TCGA-F4-6570-01 1 151491308 151491308 T C CGN Missense_Mutation p.Y105H 0.22 deleterious(0.03) possibly_damaging(0.872) TCGA-F4-6570-01 1 151678403 151678403 G - CELF3 Frame_Shift_Del p.Q389Rfs*38 0.16 TCGA-F4-6570-01 1 151787890 151787890 C T RORC Missense_Mutation p.G104S 0.33 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 152282490 152282490 C A FLG Missense_Mutation p.E1624D 0.08 benign(0.217) TCGA-F4-6570-01 1 152328587 152328587 A G FLG2 Missense_Mutation p.Y559H 0.31 unknown(0) TCGA-F4-6570-01 1 152659353 152659353 C - LCE2B Frame_Shift_Del p.P13Lfs*61 0.26 TCGA-F4-6570-01 1 152733792 152733792 T C KPRP Silent p.S576S 0.25 TCGA-F4-6570-01 1 152883707 152883707 C A IVL Silent p.G478G 0.24 TCGA-F4-6570-01 1 153750708 153750708 T - SLC27A3 Frame_Shift_Del p.F459Lfs*16 0.38 TCGA-F4-6570-01 1 154185009 154185009 C T C1orf43 Silent p.T144T 0.11 TCGA-F4-6570-01 1 154304153 154304153 C T ATP8B2 Missense_Mutation p.A179V 0.20 tolerated(0.05) possibly_damaging(0.551) TCGA-F4-6570-01 1 154458516 154458516 G A SHE Missense_Mutation p.R402C 0.29 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 1 154474126 154474126 G A SHE Missense_Mutation p.T126M 0.22 deleterious(0.04) benign(0.24) TCGA-F4-6570-01 1 154960586 154960586 C G FLAD1 Missense_Mutation p.H126Q 0.36 tolerated(0.36) benign(0.029) TCGA-F4-6570-01 1 155041640 155041640 C G EFNA4 Missense_Mutation p.I205M 0.26 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-F4-6570-01 1 155291778 155291778 C T RUSC1 Missense_Mutation p.R72W 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F4-6570-01 1 155582230 155582230 C T MSTO1 Missense_Mutation p.R279C 0.28 deleterious(0) probably_damaging(0.996) TCGA-F4-6570-01 1 156230308 156230308 C T SMG5 Silent p.P739P 0.33 TCGA-F4-6570-01 1 156498868 156498868 G A IQGAP3 Missense_Mutation p.R1471C 0.38 tolerated(0.13) benign(0.081) TCGA-F4-6570-01 1 156697079 156697079 G A ISG20L2 Silent p.F122F 0.24 TCGA-F4-6570-01 1 156815476 156815476 C A INSRR Missense_Mutation p.E703D 0.29 tolerated(0.06) benign(0.293) TCGA-F4-6570-01 1 156883790 156883790 C - PEAR1 Frame_Shift_Del p.R956Gfs*30 0.34 TCGA-F4-6570-01 1 157067693 157067693 C T ETV3L Missense_Mutation p.G192R 0.30 tolerated(0.1) benign(0.259) TCGA-F4-6570-01 1 158059510 158059510 C - KIRREL Frame_Shift_Del p.I394Sfs*11 0.26 TCGA-F4-6570-01 1 158151958 158151958 C A CD1D Silent p.A155A 0.32 TCGA-F4-6570-01 1 158326601 158326601 G A CD1E Missense_Mutation p.R361K 0.31 tolerated(0.39) benign(0.345) TCGA-F4-6570-01 1 158533299 158533300 AA - OR6P1 Frame_Shift_Del p.F32Cfs*59 0.57 TCGA-F4-6570-01 1 159021627 159021627 T C IFI16 Silent p.N552N 0.45 TCGA-F4-6570-01 1 159032423 159032423 A G AIM2 3'UTR 0.31 TCGA-F4-6570-01 1 159163732 159163732 T G CADM3 Missense_Mutation p.V232G 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-F4-6570-01 1 159409871 159409871 G A OR10J1 Missense_Mutation p.C108Y 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-F4-6570-01 1 159410501 159410501 A T OR10J1 Missense_Mutation p.K318M 0.17 deleterious(0.01) probably_damaging(0.91) TCGA-F4-6570-01 1 159898714 159898714 C - IGSF9 Frame_Shift_Del p.D822Ifs*33 0.38 TCGA-F4-6570-01 1 160012130 160012130 G A KCNJ10 Missense_Mutation p.R65C 0.33 deleterious(0.01) probably_damaging(1) TCGA-F4-6570-01 1 160057492 160057492 G A KCNJ9 Missense_Mutation p.R356Q 0.25 tolerated(0.55) benign(0.037) TCGA-F4-6570-01 1 160160433 160160433 C - CASQ1 5'UTR 0.31 TCGA-F4-6570-01 1 160249260 160249260 C T PEX19 3'UTR 0.21 TCGA-F4-6570-01 1 161183875 161183875 T - NDUFS2 Intron 0.22 TCGA-F4-6570-01 1 161721524 161721524 C A DUSP12 Silent p.P137P 0.38 TCGA-F4-6570-01 1 162353316 162353316 C T C1orf226 Missense_Mutation p.A264V 0.37 tolerated(0.14) benign(0.093) TCGA-F4-6570-01 1 16257665 16257665 G A SPEN Missense_Mutation p.V1644I 0.18 benign(0.002) TCGA-F4-6570-01 1 16272313 16272313 G A ZBTB17 Silent p.A186A 0.10 TCGA-F4-6570-01 1 16386472 16386472 C T FAM131C Missense_Mutation p.E115K 0.33 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 165324831 165324831 A C LMX1A Intron 0.28 TCGA-F4-6570-01 1 167096962 167096962 G A DUSP27 Missense_Mutation p.R865H 0.35 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 168054869 168054869 C - GPR161 Frame_Shift_Del p.G517Afs*13 0.35 TCGA-F4-6570-01 1 16901088 16901088 C T NBPF1 Silent p.Q764Q 0.07 TCGA-F4-6570-01 1 169961336 169961336 C T KIFAP3 Missense_Mutation p.R415H 0.28 deleterious(0.01) possibly_damaging(0.654) TCGA-F4-6570-01 1 17248507 17248507 C - CROCC 5'UTR 0.40 TCGA-F4-6570-01 1 17257810 17257810 G A CROCC Missense_Mutation p.E292K 0.30 probably_damaging(0.991) TCGA-F4-6570-01 1 17318281 17318281 C T ATP13A2 Silent p.T733T 0.29 TCGA-F4-6570-01 1 174363243 174363243 A G RABGAP1L Missense_Mutation p.N557S 0.23 tolerated(0.16) benign(0.015) TCGA-F4-6570-01 1 174670261 174670261 G A RABGAP1L Intron 0.15 TCGA-F4-6570-01 1 174957845 174957845 C T RABGAP1L Missense_Mutation p.A265V 0.27 tolerated(0.27) benign(0.015) TCGA-F4-6570-01 1 17550120 17550120 G A PADI1 Missense_Mutation p.R93K 0.15 tolerated(1) benign(0.001) TCGA-F4-6570-01 1 17559316 17559316 T C PADI1 Silent p.G388G 0.32 TCGA-F4-6570-01 1 177249754 177249754 A C BRINP2 Missense_Mutation p.N481T 0.26 deleterious(0.01) possibly_damaging(0.475) TCGA-F4-6570-01 1 180804065 180804065 C T XPR1 Missense_Mutation p.A397V 0.36 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 181702861 181702862 - T CACNA1E Frame_Shift_Ins p.L1080Ffs*10 0.13 TCGA-F4-6570-01 1 181705433 181705433 A C CACNA1E Missense_Mutation p.E1095D 0.17 tolerated(0.37) benign(0.217) TCGA-F4-6570-01 1 181705472 181705472 G T CACNA1E Missense_Mutation p.E1108D 0.36 tolerated(0.41) benign(0.217) TCGA-F4-6570-01 1 182443442 182443442 T G RGSL1 Missense_Mutation p.L399R 0.21 deleterious(0) probably_damaging(0.994) TCGA-F4-6570-01 1 182850714 182850714 C T DHX9 Missense_Mutation p.T949I 0.12 deleterious(0.03) probably_damaging(0.971) TCGA-F4-6570-01 1 183099670 183099670 G A LAMC1 Missense_Mutation p.A1158T 0.39 tolerated(0.55) possibly_damaging(0.603) TCGA-F4-6570-01 1 185270600 185270600 A G IVNS1ABP Silent p.H287H 0.26 TCGA-F4-6570-01 1 186052065 186052066 - A HMCN1 Frame_Shift_Ins p.Y2955Ifs*3 0.25 TCGA-F4-6570-01 1 18661428 18661428 C T IGSF21 Silent p.C116C 0.21 TCGA-F4-6570-01 1 19444329 19444329 T C UBR4 Silent p.E3539E 0.15 TCGA-F4-6570-01 1 19487573 19487573 T A UBR4 Missense_Mutation p.E1748D 0.30 benign(0.003) TCGA-F4-6570-01 1 19500862 19500862 G A UBR4 Missense_Mutation p.S978F 0.37 probably_damaging(0.929) TCGA-F4-6570-01 1 19547286 19547286 G A EMC1 Missense_Mutation p.R882C 0.29 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 1 1961035 1961035 G A GABRD Missense_Mutation p.R298H 0.10 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 196918746 196918746 G C CFHR2 Missense_Mutation p.E74Q 0.16 tolerated(0.39) probably_damaging(0.999) TCGA-F4-6570-01 1 198675866 198675866 A - PTPRC Frame_Shift_Del p.K231Nfs*22 0.22 TCGA-F4-6570-01 1 200956173 200956173 G A KIF21B Missense_Mutation p.R1189W 0.32 deleterious(0.01) possibly_damaging(0.619) TCGA-F4-6570-01 1 201061233 201061233 G A CACNA1S Silent p.T136T 0.28 TCGA-F4-6570-01 1 202409899 202409899 T C PPP1R12B Silent p.I508I 0.28 TCGA-F4-6570-01 1 203317191 203317191 G A FMOD Missense_Mutation p.P70S 0.35 tolerated(0.62) benign(0.002) TCGA-F4-6570-01 1 204217946 204217946 T C PLEKHA6 Intron 0.42 TCGA-F4-6570-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.42 TCGA-F4-6570-01 1 204379492 204379492 C T PPP1R15B Missense_Mutation p.A350T 0.30 tolerated(0.15) benign(0.091) TCGA-F4-6570-01 1 204438849 204438849 C T PIK3C2B Missense_Mutation p.E28K 0.41 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-F4-6570-01 1 20466002 20466002 C T PLA2G2F Missense_Mutation p.R28C 0.13 tolerated_low_confidence(0.21) benign(0.001) TCGA-F4-6570-01 1 205312716 205312716 A G KLHDC8A Missense_Mutation p.V6A 0.42 tolerated(1) benign(0) TCGA-F4-6570-01 1 206328752 206328752 C T CTSE Silent p.S273S 0.19 TCGA-F4-6570-01 1 206329053 206329053 C - CTSE Frame_Shift_Del p.L341Yfs*71 0.37 TCGA-F4-6570-01 1 21072034 21072034 A G HP1BP3 Splice_Site p.X456_splice 0.27 TCGA-F4-6570-01 1 210796871 210796871 C T HHAT Missense_Mutation p.A417V 0.09 tolerated(0.38) benign(0.008) TCGA-F4-6570-01 1 212798685 212798685 G A FAM71A Missense_Mutation p.A156T 0.20 deleterious(0.01) benign(0.411) TCGA-F4-6570-01 1 214830653 214830653 A - CENPF Frame_Shift_Del p.S2957Afs*6 0.38 TCGA-F4-6570-01 1 215759842 215759842 A G KCTD3 Missense_Mutation p.K211E 0.16 deleterious(0.02) probably_damaging(0.993) TCGA-F4-6570-01 1 215914871 215914871 C T USH2A Missense_Mutation p.G3853R 0.38 probably_damaging(1) TCGA-F4-6570-01 1 216424243 216424243 A G USH2A Splice_Site p.X723_splice 0.15 TCGA-F4-6570-01 1 21771647 21771647 C T NBPF3 Missense_Mutation p.P23L 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-F4-6570-01 1 217975085 217975085 A - SPATA17 Frame_Shift_Del p.N301Mfs*69 0.15 TCGA-F4-6570-01 1 220870029 220870029 G A C1orf115 Missense_Mutation p.A129T 0.34 tolerated(0.31) possibly_damaging(0.695) TCGA-F4-6570-01 1 22179253 22179253 C A HSPG2 Missense_Mutation p.G2222C 0.23 possibly_damaging(0.762) TCGA-F4-6570-01 1 22179275 22179275 G A HSPG2 Silent p.G2214G 0.24 TCGA-F4-6570-01 1 22332459 22332459 T C CELA3A Intron 0.13 TCGA-F4-6570-01 1 223934705 223934705 C T CAPN2 Silent p.N189N 0.25 TCGA-F4-6570-01 1 225211543 225211543 A - DNAH14 Frame_Shift_Del p.K447Rfs*12 0.27 TCGA-F4-6570-01 1 2268231 2268231 G A MORN1 Silent p.A365A 0.25 TCGA-F4-6570-01 1 227076673 227076673 C T PSEN2 Missense_Mutation p.A237V 0.19 deleterious(0.03) probably_damaging(0.949) TCGA-F4-6570-01 1 228399555 228399555 G A OBSCN Missense_Mutation p.G24D 0.28 probably_damaging(1) TCGA-F4-6570-01 1 228462128 228462128 C T OBSCN Missense_Mutation p.A2264V 0.12 benign(0.408) TCGA-F4-6570-01 1 228470777 228470777 C T OBSCN Silent p.D3272D 0.22 TCGA-F4-6570-01 1 228495833 228495833 G - OBSCN Frame_Shift_Del p.L5122Wfs*6 0.11 TCGA-F4-6570-01 1 22903081 22903081 C T EPHA8 Silent p.S177S 0.38 TCGA-F4-6570-01 1 229462906 229462906 C G CCSAP Intron 0.21 TCGA-F4-6570-01 1 229772040 229772040 G A URB2 Silent p.T560T 0.41 TCGA-F4-6570-01 1 230914820 230914820 C T CAPN9 Missense_Mutation p.T352M 0.24 deleterious(0.03) benign(0.065) TCGA-F4-6570-01 1 231401098 231401098 C T GNPAT Missense_Mutation p.R210W 0.28 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 1 231409687 231409687 A G GNPAT Missense_Mutation p.Y541C 0.28 tolerated(0.07) benign(0.027) TCGA-F4-6570-01 1 232575201 232575201 C T SIPA1L2 Silent p.T1228T 0.13 TCGA-F4-6570-01 1 233122230 233122230 G A PCNXL2 Missense_Mutation p.P1950S 0.24 deleterious(0.04) benign(0.097) TCGA-F4-6570-01 1 235613378 235613378 G A B3GALNT2 3'UTR 0.25 TCGA-F4-6570-01 1 235969261 235969261 C T LYST Missense_Mutation p.A1059T 0.25 tolerated_low_confidence(0.21) benign(0.001) TCGA-F4-6570-01 1 236212202 236212202 C T NID1 Missense_Mutation p.A105T 0.15 tolerated(0.06) benign(0.173) TCGA-F4-6570-01 1 236740153 236740153 G A HEATR1 Missense_Mutation p.P951L 0.33 tolerated(0.71) benign(0.002) TCGA-F4-6570-01 1 237586430 237586430 G A RYR2 Missense_Mutation p.R296Q 0.32 probably_damaging(0.978) TCGA-F4-6570-01 1 237753255 237753255 G T RYR2 Missense_Mutation p.R1254M 0.15 benign(0.133) TCGA-F4-6570-01 1 237886544 237886544 G A RYR2 Silent p.V3557V 0.16 TCGA-F4-6570-01 1 237936941 237936941 A G RYR2 Missense_Mutation p.Y3923C 0.34 probably_damaging(0.997) TCGA-F4-6570-01 1 240071655 240071655 C T CHRM3 Missense_Mutation p.R302C 0.21 deleterious(0.01) possibly_damaging(0.505) TCGA-F4-6570-01 1 240370456 240370456 T C FMN2 Missense_Mutation p.C782R 0.22 unknown(0) TCGA-F4-6570-01 1 240656311 240656311 G A GREM2 Silent p.C155C 0.22 TCGA-F4-6570-01 1 24180948 24180948 G A FUCA1 Missense_Mutation p.H291Y 0.31 deleterious(0) possibly_damaging(0.483) TCGA-F4-6570-01 1 242042273 242042273 G A EXO1 Silent p.V579V 0.32 TCGA-F4-6570-01 1 242511457 242511457 C T PLD5 Missense_Mutation p.G93R 0.29 deleterious(0) probably_damaging(0.987) TCGA-F4-6570-01 1 243419541 243419541 G A SDCCAG8 Silent p.R22R 0.21 TCGA-F4-6570-01 1 24407870 24407870 G A MYOM3 Missense_Mutation p.S786L 0.27 deleterious(0) probably_damaging(0.952) TCGA-F4-6570-01 1 244214667 244214667 C T ZBTB18 5'UTR 0.10 TCGA-F4-6570-01 1 24424449 24424449 C T MYOM3 Missense_Mutation p.G237S 0.28 deleterious(0) probably_damaging(0.989) TCGA-F4-6570-01 1 24449813 24449813 C T IL22RA1 Silent p.P257P 0.30 TCGA-F4-6570-01 1 246027124 246027125 - T SMYD3 Frame_Shift_Ins p.I293Nfs*2 0.23 TCGA-F4-6570-01 1 247025323 247025323 G A AHCTF1 Nonsense_Mutation p.R1234* 0.25 TCGA-F4-6570-01 1 247081570 247081570 G A AHCTF1 Missense_Mutation p.R44C 0.24 tolerated(0.36) possibly_damaging(0.857) TCGA-F4-6570-01 1 247752398 247752398 C T OR2G2 Missense_Mutation p.S246F 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 1 247769067 247769068 - T OR2G3 Frame_Shift_Ins p.L63Sfs*14 0.16 TCGA-F4-6570-01 1 247902532 247902532 T - OR14K1 Frame_Shift_Del p.S207Hfs*3 0.27 TCGA-F4-6570-01 1 247921554 247921554 T C OR1C1 Missense_Mutation p.D52G 0.31 deleterious(0) probably_damaging(0.977) TCGA-F4-6570-01 1 248512475 248512475 C T OR14C36 Silent p.I133I 0.28 TCGA-F4-6570-01 1 24995930 24995930 C T SRRM1 Missense_Mutation p.P686S 0.17 unknown(0) TCGA-F4-6570-01 1 26689534 26689534 G A ZNF683 Missense_Mutation p.R376W 0.46 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 27105553 27105553 C T ARID1A Nonsense_Mutation p.R1722* 0.29 TCGA-F4-6570-01 1 27332867 27332867 G A FAM46B Silent p.Y282Y 0.20 TCGA-F4-6570-01 1 27429731 27429731 C T SLC9A1 Missense_Mutation p.E520K 0.17 deleterious(0.01) probably_damaging(0.955) TCGA-F4-6570-01 1 27677316 27677316 G A SYTL1 Missense_Mutation p.R346H 0.27 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 1 29391606 29391606 G A EPB41 Missense_Mutation p.R707H 0.14 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 29447269 29447269 G T TMEM200B 3'UTR 0.31 TCGA-F4-6570-01 1 29447710 29447710 C T TMEM200B Missense_Mutation p.A211T 0.20 tolerated(0.1) possibly_damaging(0.769) TCGA-F4-6570-01 1 29528475 29528475 C T MECR Missense_Mutation p.E246K 0.27 tolerated(0.07) benign(0.01) TCGA-F4-6570-01 1 33059217 33059217 C T ZBTB8A Nonsense_Mutation p.R229* 0.20 TCGA-F4-6570-01 1 33354851 33354851 C T HPCA Missense_Mutation p.R118W 0.24 deleterious(0) possibly_damaging(0.784) TCGA-F4-6570-01 1 33407933 33407933 G A RNF19B Silent p.S511S 0.10 TCGA-F4-6570-01 1 33795687 33795687 C A PHC2 Missense_Mutation p.K710N 0.15 deleterious(0.04) possibly_damaging(0.771) TCGA-F4-6570-01 1 3383884 3383884 T C ARHGEF16 Missense_Mutation p.W263R 0.43 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 3410404 3410404 C - MEGF6 Frame_Shift_Del p.A1440Hfs*78 0.38 TCGA-F4-6570-01 1 35972480 35972480 T - KIAA0319L Frame_Shift_Del p.K133Nfs*22 0.19 TCGA-F4-6570-01 1 36354045 36354045 C - AGO1 Frame_Shift_Del p.L17Cfs*99 0.36 TCGA-F4-6570-01 1 36354152 36354152 C T AGO1 Silent p.I50I 0.13 TCGA-F4-6570-01 1 36565763 36565763 G T COL8A2 Silent p.S27S 0.33 TCGA-F4-6570-01 1 36755210 36755210 G T THRAP3 Missense_Mutation p.Q530H 0.30 tolerated(0.18) benign(0.004) TCGA-F4-6570-01 1 36932196 36932196 C A CSF3R Missense_Mutation p.S785I 0.38 deleterious(0) possibly_damaging(0.729) TCGA-F4-6570-01 1 37271711 37271711 G A GRIK3 Missense_Mutation p.P770S 0.36 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 1 37948649 37948649 A G ZC3H12A Missense_Mutation p.S413G 0.38 tolerated(0.59) benign(0) TCGA-F4-6570-01 1 38227457 38227457 G A EPHA10 Missense_Mutation p.A157V 0.39 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 1 38261346 38261346 A - MANEAL Intron 0.30 TCGA-F4-6570-01 1 39801904 39801904 G A MACF1 Intron 0.09 TCGA-F4-6570-01 1 39914410 39914410 A G MACF1 Missense_Mutation p.T4686A 0.33 probably_damaging(0.999) TCGA-F4-6570-01 1 40214739 40214739 A G PPIE Missense_Mutation p.I225V 0.37 tolerated(0.37) probably_damaging(0.946) TCGA-F4-6570-01 1 40236161 40236162 GG - OXCT2 Frame_Shift_Del p.P256Rfs*7 0.23 TCGA-F4-6570-01 1 41304269 41304269 G A KCNQ4 3'UTR 0.33 TCGA-F4-6570-01 1 42922666 42922666 T A PPCS Missense_Mutation p.F144I 0.24 tolerated(0.14) benign(0.065) TCGA-F4-6570-01 1 43212981 43212981 C T LEPRE1 Missense_Mutation p.A673T 0.38 deleterious(0.02) probably_damaging(0.912) TCGA-F4-6570-01 1 43772528 43772528 C A TIE1 Missense_Mutation p.L168M 0.23 tolerated(0.12) possibly_damaging(0.639) TCGA-F4-6570-01 1 43898252 43898252 G A SZT2 Missense_Mutation p.S1779N 0.27 tolerated(0.11) benign(0.034) TCGA-F4-6570-01 1 44010722 44010722 G A PTPRF 5'UTR 0.17 TCGA-F4-6570-01 1 44069403 44069403 C T PTPRF Silent p.A860A 0.27 TCGA-F4-6570-01 1 45253079 45253079 C T BEST4 Missense_Mutation p.R71H 0.31 tolerated(0.2) benign(0.04) TCGA-F4-6570-01 1 46120890 46120890 A - GPBP1L1 Frame_Shift_Del p.F54Lfs*53 0.34 TCGA-F4-6570-01 1 46499854 46499854 C G MAST2 Missense_Mutation p.P1262A 0.31 deleterious_low_confidence(0.02) benign(0.076) TCGA-F4-6570-01 1 46654443 46654443 C A POMGNT1 Missense_Mutation p.W732L 0.22 benign(0) TCGA-F4-6570-01 1 46726478 46726478 G A RAD54L Missense_Mutation p.G186D 0.29 deleterious(0) probably_damaging(0.996) TCGA-F4-6570-01 1 52850925 52850925 A T ORC1 Silent p.V497V 0.33 TCGA-F4-6570-01 1 52981558 52981558 T C ZCCHC11 Intron 0.33 TCGA-F4-6570-01 1 54684006 54684006 G A MRPL37 3'UTR 0.38 TCGA-F4-6570-01 1 57171868 57171868 T G PRKAA2 Missense_Mutation p.L466R 0.18 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 57216797 57216797 T A C1orf168 Missense_Mutation p.K436M 0.41 deleterious(0) probably_damaging(0.946) TCGA-F4-6570-01 1 6279322 6279323 AG - RNF207 Frame_Shift_Del p.K590Dfs*5 0.24 TCGA-F4-6570-01 1 62910504 62910505 - A USP1 Frame_Shift_Ins p.E221Rfs*12 0.11 TCGA-F4-6570-01 1 6696192 6696192 G A DNAJC11 Missense_Mutation p.R547W 0.28 deleterious(0) probably_damaging(0.993) TCGA-F4-6570-01 1 70505345 70505345 G A LRRC7 Missense_Mutation p.D1242N 0.42 deleterious(0.04) possibly_damaging(0.772) TCGA-F4-6570-01 1 70505347 70505347 C A LRRC7 Missense_Mutation p.D1242E 0.41 tolerated(0.82) benign(0.036) TCGA-F4-6570-01 1 70904920 70904920 G A CTH 3'UTR 0.32 TCGA-F4-6570-01 1 71513010 71513010 C T PTGER3 Missense_Mutation p.R84H 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-F4-6570-01 1 72058499 72058499 C T NEGR1 Splice_Site p.X314_splice 0.10 TCGA-F4-6570-01 1 75038681 75038681 C A C1orf173 Missense_Mutation p.A905S 0.26 tolerated(0.17) benign(0.242) TCGA-F4-6570-01 1 75716909 75716909 A G SLC44A5 Missense_Mutation p.C111R 0.33 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 1 77334257 77334257 G T ST6GALNAC5 Missense_Mutation p.G31C 0.31 possibly_damaging(0.882) TCGA-F4-6570-01 1 7798362 7798362 G T CAMTA1 Missense_Mutation p.Q1334H 0.32 tolerated_low_confidence(0.1) probably_damaging(0.993) TCGA-F4-6570-01 1 86896606 86896606 T C CLCA2 Silent p.N179N 0.35 TCGA-F4-6570-01 1 89237488 89237488 C T PKN2 Missense_Mutation p.T304I 0.36 tolerated(0.26) benign(0.011) TCGA-F4-6570-01 1 90473298 90473298 C T ZNF326 Nonsense_Mutation p.R202* 0.14 TCGA-F4-6570-01 1 91726610 91726610 C A HFM1 3'UTR 0.38 TCGA-F4-6570-01 1 92636956 92636956 C T KIAA1107 Missense_Mutation p.A87V 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6570-01 1 92946010 92946010 G A GFI1 Silent p.H273H 0.27 TCGA-F4-6570-01 1 9323954 9323954 G T H6PD Missense_Mutation p.G468C 0.13 tolerated(0.11) benign(0.112) TCGA-F4-6570-01 1 94037299 94037299 C T BCAR3 Silent p.A634A 0.37 TCGA-F4-6570-01 1 97243426 97243426 T A PTBP2 Missense_Mutation p.I211N 0.13 deleterious(0.04) probably_damaging(0.913) TCGA-F4-6570-01 1 9791446 9791446 C T CLSTN1 Missense_Mutation p.V856I 0.31 tolerated(0.14) possibly_damaging(0.578) TCGA-F4-6570-01 20 10625818 10625818 C T JAG1 Missense_Mutation p.G734S 0.10 deleterious(0.01) probably_damaging(1) TCGA-F4-6570-01 20 13763492 13763492 T - ESF1 Frame_Shift_Del p.T99Pfs*12 0.21 TCGA-F4-6570-01 20 16337097 16337097 G A KIF16B Missense_Mutation p.R1167W 0.33 deleterious(0.02) possibly_damaging(0.776) TCGA-F4-6570-01 20 17614129 17614129 G A RRBP1 Silent p.F429F 0.30 TCGA-F4-6570-01 20 18142746 18142746 C T CSRP2BP Missense_Mutation p.P322L 0.28 tolerated(0.07) probably_damaging(0.91) TCGA-F4-6570-01 20 18393375 18393376 - T DZANK1 Frame_Shift_Ins p.E450Gfs*16 0.32 TCGA-F4-6570-01 20 20029140 20029140 C T CRNKL1 Missense_Mutation p.R262Q 0.42 deleterious(0) probably_damaging(0.995) TCGA-F4-6570-01 20 20071496 20071496 A G C20orf26 Missense_Mutation p.D192G 0.08 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 20 20596685 20596685 A G RALGAPA2 Splice_Site p.X563_splice 0.39 TCGA-F4-6570-01 20 2097584 2097584 G A STK35 Missense_Mutation p.A389T 0.19 tolerated(0.13) benign(0.055) TCGA-F4-6570-01 20 21687639 21687639 C T PAX1 Missense_Mutation p.R284C 0.38 deleterious(0) benign(0.342) TCGA-F4-6570-01 20 2291773 2291773 C T TGM3 Nonsense_Mutation p.Q180* 0.19 TCGA-F4-6570-01 20 2384126 2384126 C - TGM6 Frame_Shift_Del p.Q360Rfs*99 0.33 TCGA-F4-6570-01 20 24930069 24930069 C T CST7 5'UTR 0.28 TCGA-F4-6570-01 20 25056761 25056761 T C VSX1 3'UTR 0.29 TCGA-F4-6570-01 20 25273215 25273215 C T PYGB Missense_Mutation p.R715W 0.31 deleterious(0) probably_damaging(0.922) TCGA-F4-6570-01 20 25656579 25656579 T C ZNF337 Missense_Mutation p.K449E 0.43 tolerated(1) possibly_damaging(0.621) TCGA-F4-6570-01 20 30070122 30070122 G - REM1 Frame_Shift_Del p.G154Afs*111 0.33 TCGA-F4-6570-01 20 31024109 31024109 A G ASXL1 Silent p.G1198G 0.19 TCGA-F4-6570-01 20 3183997 3183997 G A DDRGK1 Silent p.L53L 0.29 TCGA-F4-6570-01 20 3185290 3185290 C T DDRGK1 5'UTR 0.44 TCGA-F4-6570-01 20 32880258 32880258 G T AHCY Silent p.T117T 0.26 TCGA-F4-6570-01 20 33330644 33330644 T C NCOA6 Missense_Mutation p.E1139G 0.26 benign(0.008) TCGA-F4-6570-01 20 33567227 33567227 C T MYH7B Silent p.D84D 0.30 TCGA-F4-6570-01 20 33586679 33586679 C A MYH7B Missense_Mutation p.A1426E 0.39 benign(0.364) TCGA-F4-6570-01 20 35444172 35444172 G A SOGA1 Missense_Mutation p.S558L 0.44 tolerated(0.4) benign(0.183) TCGA-F4-6570-01 20 36361416 36361416 A - CTNNBL1 Frame_Shift_Del p.R58Gfs*25 0.18 TCGA-F4-6570-01 20 36640064 36640064 G T TTI1 Missense_Mutation p.L719M 0.34 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 20 39721181 39721181 C A TOP1 Silent p.A228A 0.13 TCGA-F4-6570-01 20 399998 399998 C T RBCK1 Silent p.G156G 0.10 TCGA-F4-6570-01 20 40053953 40053953 A T CHD6 Missense_Mutation p.V1404D 0.13 deleterious(0) benign(0.122) TCGA-F4-6570-01 20 40116311 40116311 C A CHD6 Missense_Mutation p.E665D 0.14 tolerated(0.14) possibly_damaging(0.686) TCGA-F4-6570-01 20 42694500 42694500 C A TOX2 Missense_Mutation p.P370H 0.15 tolerated(0.27) probably_damaging(0.999) TCGA-F4-6570-01 20 43851648 43851648 C T SEMG2 Missense_Mutation p.H459Y 0.08 deleterious(0.01) benign(0.415) TCGA-F4-6570-01 20 44580807 44580807 G A ZNF335 Silent p.A1056A 0.35 TCGA-F4-6570-01 20 44594346 44594346 G A ZNF335 Silent p.T341T 0.27 TCGA-F4-6570-01 20 44657975 44657975 G A SLC12A5 Intron 0.27 TCGA-F4-6570-01 20 45004000 45004000 C T ELMO2 Missense_Mutation p.D314N 0.46 deleterious(0) possibly_damaging(0.566) TCGA-F4-6570-01 20 45905197 45905197 C T ZMYND8 Silent p.S447S 0.38 TCGA-F4-6570-01 20 4706951 4706951 T C PRND 3'UTR 0.30 TCGA-F4-6570-01 20 47991189 47991189 C T KCNB1 Missense_Mutation p.R303Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 20 49218765 49218765 G A FAM65C Silent p.H497H 0.22 TCGA-F4-6570-01 20 50049133 50049133 G A NFATC2 Silent p.F731F 0.11 TCGA-F4-6570-01 20 52192647 52192647 C T ZNF217 Missense_Mutation p.A886T 0.27 tolerated(0.39) benign(0.036) TCGA-F4-6570-01 20 56807874 56807874 G A ANKRD60 5'Flank 0.25 TCGA-F4-6570-01 20 57829296 57829296 C T ZNF831 Missense_Mutation p.A1511V 0.40 tolerated(0.34) benign(0.012) TCGA-F4-6570-01 20 58442801 58442801 C T SYCP2 Missense_Mutation p.E1364K 0.15 deleterious(0.03) benign(0.082) TCGA-F4-6570-01 20 58456029 58456029 C A SYCP2 Missense_Mutation p.D922Y 0.30 deleterious(0) probably_damaging(0.992) TCGA-F4-6570-01 20 58533804 58533805 - C CDH26 Frame_Shift_Ins p.S10Lfs*19 0.19 TCGA-F4-6570-01 20 5903253 5903253 C T CHGB Missense_Mutation p.R155C 0.43 tolerated(0.11) possibly_damaging(0.627) TCGA-F4-6570-01 20 60498567 60498567 C T CDH4 Missense_Mutation p.A478V 0.43 tolerated(0.88) benign(0.13) TCGA-F4-6570-01 20 61443698 61443698 G A OGFR Missense_Mutation p.R244Q 0.59 tolerated(0.6) benign(0.012) TCGA-F4-6570-01 20 61461754 61461754 C T COL9A3 Nonsense_Mutation p.R402* 0.36 TCGA-F4-6570-01 20 61511656 61511656 G A DIDO1 Silent p.G1884G 0.23 TCGA-F4-6570-01 20 61522306 61522306 G A DIDO1 Intron 0.14 TCGA-F4-6570-01 20 61576278 61576278 G A GID8 3'UTR 0.11 TCGA-F4-6570-01 20 62196245 62196245 C T HELZ2 Silent p.P1310P 0.19 TCGA-F4-6570-01 20 62221932 62221932 G A GMEB2 Missense_Mutation p.P368L 0.55 deleterious(0) probably_damaging(0.967) TCGA-F4-6570-01 20 62421273 62421273 G A ZBTB46 Missense_Mutation p.R280W 0.09 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 20 62614467 62614467 C T PRPF6 Missense_Mutation p.R47C 0.26 deleterious(0.01) probably_damaging(0.946) TCGA-F4-6570-01 20 62659079 62659079 C A PRPF6 Missense_Mutation p.P777T 0.37 deleterious(0.03) benign(0.06) TCGA-F4-6570-01 20 62699426 62699426 C T TCEA2 Missense_Mutation p.R90W 0.13 deleterious(0) benign(0.001) TCGA-F4-6570-01 20 62737396 62737396 G A NPBWR2 Silent p.L263L 0.40 TCGA-F4-6570-01 20 9364917 9364917 G A PLCB4 Missense_Mutation p.R308H 0.28 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 20 9546560 9546560 G A PAK7 Nonsense_Mutation p.R488* 0.11 TCGA-F4-6570-01 21 10907027 10907027 T G TPTE Missense_Mutation p.K512Q 0.17 deleterious(0.01) benign(0.042) TCGA-F4-6570-01 21 14410727 14410727 T A ANKRD30BP2 5'Flank 0.09 TCGA-F4-6570-01 21 19744604 19744604 A C TMPRSS15 Silent p.P190P 0.12 TCGA-F4-6570-01 21 22804492 22804492 C T NCAM2 Silent p.S515S 0.31 TCGA-F4-6570-01 21 31661780 31661780 A - KRTAP25-1 Frame_Shift_Del p.F10Sfs*27 0.31 TCGA-F4-6570-01 21 31709708 31709708 C T KRTAP27-1 Silent p.R93R 0.30 TCGA-F4-6570-01 21 31709823 31709823 T C KRTAP27-1 Missense_Mutation p.N55S 0.40 tolerated(1) benign(0.014) TCGA-F4-6570-01 21 31864193 31864193 C T KRTAP19-3 Missense_Mutation p.G28E 0.32 tolerated_low_confidence(0.23) unknown(0) TCGA-F4-6570-01 21 34988890 34988890 A G CRYZL1 Intron 0.20 TCGA-F4-6570-01 21 35239619 35239619 C A ITSN1 Missense_Mutation p.P1386Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 21 35475039 35475039 C T SLC5A3 3'UTR 0.18 TCGA-F4-6570-01 21 37443324 37443324 C T CBR1 Silent p.C122C 0.30 TCGA-F4-6570-01 21 38600048 38600048 C T DSCR3 Missense_Mutation p.G240R 0.28 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 21 40568602 40568602 C T BRWD1 Silent p.S2131S 0.16 TCGA-F4-6570-01 21 40582061 40582061 T C BRWD1 Missense_Mutation p.I1353V 0.17 tolerated(0.07) possibly_damaging(0.861) TCGA-F4-6570-01 21 41151124 41151124 C A IGSF5 Missense_Mutation p.L276I 0.33 tolerated(0.06) benign(0.008) TCGA-F4-6570-01 21 43867237 43867237 C T UBASH3A Missense_Mutation p.P640L 0.19 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 21 45523260 45523260 G A TRAPPC10 Missense_Mutation p.V1210M 0.13 tolerated(0.15) benign(0.094) TCGA-F4-6570-01 21 46058123 46058123 C T KRTAP10-10 3'UTR 0.26 TCGA-F4-6570-01 21 46603387 46603387 A T ADARB1 Missense_Mutation p.D453V 0.42 deleterious(0) probably_damaging(0.944) TCGA-F4-6570-01 21 46917558 46917559 - C COL18A1 Frame_Shift_Ins p.G1072Rfs*9 0.39 TCGA-F4-6570-01 21 47410318 47410318 C T COL6A1 Silent p.D328D 0.37 TCGA-F4-6570-01 21 47625800 47625800 C T LSS Silent p.A540A 0.27 TCGA-F4-6570-01 21 47697544 47697544 G A MCM3AP Silent p.L585L 0.35 TCGA-F4-6570-01 22 16449487 16449488 - T OR11H1 Frame_Shift_Ins p.N106Kfs*31 0.21 TCGA-F4-6570-01 22 17073292 17073292 C T CCT8L2 Missense_Mutation p.C50Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-F4-6570-01 22 17590403 17590404 - G IL17RA Frame_Shift_Ins p.C768Lfs*3 0.17 TCGA-F4-6570-01 22 19512358 19512358 C - CLDN5 Intron 0.36 TCGA-F4-6570-01 22 20230541 20230541 C T RTN4R Missense_Mutation p.V39M 0.29 tolerated(1) benign(0.048) TCGA-F4-6570-01 22 20458843 20458843 G A RIMBP3 Missense_Mutation p.A820V 0.17 tolerated(0.48) benign(0.037) TCGA-F4-6570-01 22 20731443 20731443 A G USP41 Splice_Site p.X85_splice 0.29 TCGA-F4-6570-01 22 21799953 21799953 C - HIC2 Frame_Shift_Del p.P258Lfs*16 0.21 TCGA-F4-6570-01 22 22285603 22285603 C T PPM1F Missense_Mutation p.A270T 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-F4-6570-01 22 23165619 23165620 - C IGLV2-8 Frame_Shift_Ins p.K66Qfs*6 0.11 TCGA-F4-6570-01 22 23962791 23962791 T C C22orf43 Silent p.S132S 0.46 TCGA-F4-6570-01 22 24836788 24836788 G A ADORA2A Silent p.L190L 0.18 TCGA-F4-6570-01 22 24981964 24981964 G T FAM211B Missense_Mutation p.L280M 0.73 tolerated(0.06) benign(0.057) TCGA-F4-6570-01 22 26164229 26164229 G A MYO18B Missense_Mutation p.D116N 0.37 tolerated_low_confidence(0.06) benign(0.016) TCGA-F4-6570-01 22 26165342 26165342 G A MYO18B Missense_Mutation p.G487R 0.27 tolerated(0.09) benign(0.009) TCGA-F4-6570-01 22 26346416 26346416 A C MYO18B Missense_Mutation p.Q1944H 0.21 deleterious(0.01) benign(0.043) TCGA-F4-6570-01 22 29383171 29383171 C T ZNRF3 Silent p.C136C 0.16 TCGA-F4-6570-01 22 29627580 29627580 A G EMID1 Splice_Site p.X196_splice 0.45 TCGA-F4-6570-01 22 29694744 29694744 C T EWSR1 Missense_Mutation p.P485L 0.34 tolerated(0.15) unknown(0) TCGA-F4-6570-01 22 30977042 30977042 G A PES1 Missense_Mutation p.A290V 0.28 tolerated(0.43) benign(0) TCGA-F4-6570-01 22 31011601 31011601 C - TCN2 Frame_Shift_Del p.M258Cfs*31 0.21 TCGA-F4-6570-01 22 31322775 31322776 CT - MORC2 3'UTR 0.25 TCGA-F4-6570-01 22 31536150 31536150 G A PLA2G3 Missense_Mutation p.A64V 0.14 tolerated(0.08) benign(0.173) TCGA-F4-6570-01 22 32015551 32015552 CT - PISD 3'UTR 0.37 TCGA-F4-6570-01 22 32297790 32297790 T C DEPDC5 Splice_Site p.X1470_splice 0.34 TCGA-F4-6570-01 22 32754418 32754418 G A RFPL3 Missense_Mutation p.M120I 0.27 tolerated(0.26) benign(0.064) TCGA-F4-6570-01 22 33712183 33712183 G A LARGE Missense_Mutation p.R447W 0.42 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 22 37154366 37154366 C T IFT27 Missense_Mutation p.A184T 0.19 tolerated(0.75) benign(0.003) TCGA-F4-6570-01 22 37603625 37603625 G A SSTR3 Missense_Mutation p.T73M 0.22 deleterious(0) probably_damaging(0.969) TCGA-F4-6570-01 22 37770756 37770756 C T ELFN2 Silent p.S273S 0.19 TCGA-F4-6570-01 22 38027008 38027008 A G GGA1 Missense_Mutation p.H477R 0.26 tolerated(0.38) benign(0.028) TCGA-F4-6570-01 22 38271950 38271950 G A EIF3L Missense_Mutation p.A337T 0.14 tolerated(0.8) benign(0.036) TCGA-F4-6570-01 22 38612394 38612394 A - MAFF 3'UTR 0.28 TCGA-F4-6570-01 22 38690231 38690231 A G CSNK1E Missense_Mutation p.S368P 0.27 deleterious_low_confidence(0.05) probably_damaging(0.91) TCGA-F4-6570-01 22 39136408 39136408 G T SUN2 Missense_Mutation p.S428Y 0.34 tolerated(0.34) benign(0.104) TCGA-F4-6570-01 22 41572409 41572409 A G EP300 Silent p.R1646R 0.15 TCGA-F4-6570-01 22 41753191 41753191 G A ZC3H7B Missense_Mutation p.G898S 0.48 tolerated(0.07) benign(0.073) TCGA-F4-6570-01 22 42474247 42474247 C A FAM109B 3'UTR 0.08 TCGA-F4-6570-01 22 42474990 42474990 C A FAM109B 3'UTR 0.28 TCGA-F4-6570-01 22 42538575 42538575 A G NDUFA6-AS1 3'Flank 0.25 TCGA-F4-6570-01 22 42988072 42988073 CA - POLDIP3 Frame_Shift_Del p.C303Wfs*29 0.30 TCGA-F4-6570-01 22 43089338 43089338 A C A4GALT Missense_Mutation p.V207G 0.27 deleterious(0.02) benign(0.122) TCGA-F4-6570-01 22 43287100 43287100 G T PACSIN2 Silent p.A102A 0.21 TCGA-F4-6570-01 22 43564151 43564151 G A TTLL12 Nonsense_Mutation p.Q600* 0.15 TCGA-F4-6570-01 22 44333018 44333018 G A PNPLA3 Missense_Mutation p.S282N 0.25 tolerated(0.18) benign(0.007) TCGA-F4-6570-01 22 45130928 45130928 G A PRR5 Missense_Mutation p.V216M 0.57 deleterious(0.05) benign(0.403) TCGA-F4-6570-01 22 45182362 45182362 G T PRR5-ARHGAP8 Silent p.A239A 0.15 TCGA-F4-6570-01 22 46653562 46653562 A - PKDREJ Frame_Shift_Del p.P1887Qfs*10 0.19 TCGA-F4-6570-01 22 49103576 49103576 G A FAM19A5 Missense_Mutation p.E104K 0.39 deleterious(0.03) probably_damaging(0.936) TCGA-F4-6570-01 22 50693887 50693887 G A MAPK12 Missense_Mutation p.P282L 0.28 deleterious(0.03) benign(0.065) TCGA-F4-6570-01 22 50869710 50869710 G A PPP6R2 Missense_Mutation p.G413R 0.27 tolerated(0.13) benign(0.049) TCGA-F4-6570-01 22 50879410 50879410 C G PPP6R2 Missense_Mutation p.A819G 0.37 tolerated(0.09) benign(0.012) TCGA-F4-6570-01 22 50921009 50921009 C A ADM2 Silent p.R42R 0.25 TCGA-F4-6570-01 22 51018246 51018246 C T CHKB Missense_Mutation p.R314H 0.33 deleterious(0.04) benign(0.038) TCGA-F4-6570-01 2 100019566 100019566 G A REV1 Missense_Mutation p.P1057L 0.27 tolerated(0.22) benign(0.002) TCGA-F4-6570-01 2 10192595 10192595 C T KLF11 Silent p.S500S 0.11 TCGA-F4-6570-01 2 103325088 103325088 G A SLC9A2 3'UTR 0.27 TCGA-F4-6570-01 2 109271485 109271485 G A LIMS1 5'Flank 0.28 TCGA-F4-6570-01 2 109379946 109379946 C A RANBP2 Missense_Mutation p.P984H 0.17 deleterious(0) benign(0.192) TCGA-F4-6570-01 2 110065682 110065682 C T SH3RF3 Missense_Mutation p.R629C 0.29 tolerated(0.05) benign(0.066) TCGA-F4-6570-01 2 112751921 112751921 G A MERTK Missense_Mutation p.V464I 0.31 tolerated(0.72) benign(0.007) TCGA-F4-6570-01 2 113317051 113317051 C T POLR1B Silent p.D504D 0.11 TCGA-F4-6570-01 2 114257044 114257044 C T FOXD4L1 Nonsense_Mutation p.R71* 0.35 TCGA-F4-6570-01 2 115919766 115919766 C T DPP10 Intron 0.24 TCGA-F4-6570-01 2 118586995 118586995 A G DDX18 Missense_Mutation p.Q608R 0.13 tolerated(0.1) benign(0.004) TCGA-F4-6570-01 2 119915183 119915183 C T C1QL2 Silent p.A221A 0.29 TCGA-F4-6570-01 2 120128318 120128318 C T DBI Missense_Mutation p.R105W 0.17 tolerated(0.07) benign(0.302) TCGA-F4-6570-01 2 120658363 120658363 C T PTPN4 Nonsense_Mutation p.R249* 0.30 TCGA-F4-6570-01 2 120836148 120836148 T C EPB41L5 Missense_Mutation p.L265S 0.17 deleterious(0) probably_damaging(0.993) TCGA-F4-6570-01 2 125320873 125320873 A C CNTNAP5 Missense_Mutation p.S576R 0.11 deleterious(0) benign(0.136) TCGA-F4-6570-01 2 125555685 125555685 T - CNTNAP5 Frame_Shift_Del p.F1002Lfs*17 0.31 TCGA-F4-6570-01 2 128016906 128016906 A T ERCC3 Missense_Mutation p.V728E 0.19 tolerated(1) benign(0.001) TCGA-F4-6570-01 2 128081791 128081791 G T MAP3K2 Missense_Mutation p.P235H 0.29 tolerated(0.51) probably_damaging(0.999) TCGA-F4-6570-01 2 128381771 128381771 G A MYO7B Missense_Mutation p.R1282H 0.57 deleterious(0.03) probably_damaging(0.964) TCGA-F4-6570-01 2 129025879 129025879 G A HS6ST1 Silent p.L365L 0.14 TCGA-F4-6570-01 2 130737455 130737455 G A RAB6C 5'UTR 0.40 TCGA-F4-6570-01 2 130912022 130912022 A G SMPD4 Missense_Mutation p.I535T 0.15 tolerated(0.2) possibly_damaging(0.702) TCGA-F4-6570-01 2 131521412 131521412 A C AMER3 Silent p.T589T 0.38 TCGA-F4-6570-01 2 131523030 131523030 G A AMER3 3'UTR 0.34 TCGA-F4-6570-01 2 132240452 132240452 C - TUBA3D 3'UTR 0.09 TCGA-F4-6570-01 2 133540888 133540888 C T NCKAP5 Missense_Mutation p.V1166M 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-F4-6570-01 2 133542069 133542069 T C NCKAP5 Missense_Mutation p.K772R 0.19 tolerated(0.16) benign(0.023) TCGA-F4-6570-01 2 137639861 137639861 A C THSD7B Missense_Mutation p.K38T 0.32 tolerated(0.31) unknown(0) TCGA-F4-6570-01 2 138376053 138376053 A C THSD7B Silent p.P1222P 0.36 TCGA-F4-6570-01 2 145157095 145157095 A G ZEB2 Silent p.N553N 0.30 TCGA-F4-6570-01 2 145157304 145157304 A C ZEB2 Missense_Mutation p.S484A 0.44 tolerated(0.76) benign(0.035) TCGA-F4-6570-01 2 152319432 152319432 A G RIF1 Missense_Mutation p.Q1133R 0.28 tolerated(0.08) benign(0.009) TCGA-F4-6570-01 2 152698457 152698457 G A CACNB4 Missense_Mutation p.T421M 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.8) TCGA-F4-6570-01 2 158272228 158272228 G A CYTIP Silent p.G347G 0.12 TCGA-F4-6570-01 2 160035358 160035361 TCTC - TANC1 Frame_Shift_Del p.E735Sfs*8 0.36 TCGA-F4-6570-01 2 160605264 160605264 T C MARCH7 Missense_Mutation p.V488A 0.24 tolerated(0.07) probably_damaging(0.989) TCGA-F4-6570-01 2 160798639 160798639 T - PLA2R1 Frame_Shift_Del p.G1393Dfs*13 0.24 TCGA-F4-6570-01 2 162711511 162711511 G T SLC4A10 Nonsense_Mutation p.G150* 0.21 TCGA-F4-6570-01 2 163003901 163003901 T C GCG Silent p.Q72Q 0.23 TCGA-F4-6570-01 2 163230113 163230113 G A KCNH7 Missense_Mutation p.T1064I 0.36 tolerated(0.46) benign(0.004) TCGA-F4-6570-01 2 165765199 165765199 G A SLC38A11 Missense_Mutation p.T293M 0.33 tolerated(0.22) benign(0.21) TCGA-F4-6570-01 2 167083206 167083206 C A SCN9A Missense_Mutation p.K1412N 0.22 tolerated(0.09) benign(0.119) TCGA-F4-6570-01 2 167137046 167137046 A C SCN9A Missense_Mutation p.L711V 0.29 deleterious(0) probably_damaging(0.99) TCGA-F4-6570-01 2 168727215 168727222 TTTTTTTC - B3GALT1 3'UTR 0.15 TCGA-F4-6570-01 2 169727842 169727842 T C SPC25 3'UTR 0.67 TCGA-F4-6570-01 2 171239587 171239587 C T MYO3B Missense_Mutation p.T358I 0.21 tolerated(0.23) benign(0.219) TCGA-F4-6570-01 2 171570243 171570243 C A LINC01124 Missense_Mutation p.Q237H 0.40 unknown(0) TCGA-F4-6570-01 2 172945152 172945152 G A METAP1D 3'UTR 0.16 TCGA-F4-6570-01 2 173955820 173955820 A G MLTK Missense_Mutation p.N21D 0.11 tolerated(0.11) possibly_damaging(0.814) TCGA-F4-6570-01 2 179438219 179438219 C - TTN Frame_Shift_Del p.V24214Cfs*4 0.34 TCGA-F4-6570-01 2 179439589 179439589 A G TTN Missense_Mutation p.V23757A 0.29 TCGA-F4-6570-01 2 179462400 179462400 C A TTN Missense_Mutation p.A19137S 0.11 TCGA-F4-6570-01 2 179472135 179472135 T G TTN Missense_Mutation p.E17760D 0.25 TCGA-F4-6570-01 2 179480433 179480433 C T TTN Missense_Mutation p.R16132H 0.24 TCGA-F4-6570-01 2 179500231 179500231 T G TTN Missense_Mutation p.E13940D 0.12 TCGA-F4-6570-01 2 179529600 179529600 T - TTN Frame_Shift_Del p.R12033Efs*125 0.23 TCGA-F4-6570-01 2 179593063 179593063 A G TTN Silent p.S6496S 0.36 TCGA-F4-6570-01 2 179596456 179596456 C A TTN Missense_Mutation p.G5716C 0.45 TCGA-F4-6570-01 2 181848803 181848805 TCC - UBE2E3 In_Frame_Del p.P79del 0.28 TCGA-F4-6570-01 2 182521604 182521604 C T CERKL Missense_Mutation p.E44K 0.32 deleterious(0.01) benign(0.372) TCGA-F4-6570-01 2 183731088 183731088 C T FRZB Missense_Mutation p.A65T 0.22 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 2 1843058 1843058 C T MYT1L Silent p.A979A 0.20 TCGA-F4-6570-01 2 185802125 185802125 A G ZNF804A Missense_Mutation p.S668G 0.25 tolerated(0.38) possibly_damaging(0.899) TCGA-F4-6570-01 2 186678411 186678411 A G FSIP2 Missense_Mutation p.Y6745C 0.28 possibly_damaging(0.454) TCGA-F4-6570-01 2 187368789 187368791 AAC - ZC3H15 In_Frame_Del p.N190del 0.32 TCGA-F4-6570-01 2 190332358 190332358 C T WDR75 Nonsense_Mutation p.R538* 0.32 TCGA-F4-6570-01 2 190742164 190742164 T C PMS1 3'UTR 0.25 TCGA-F4-6570-01 2 191235578 191235578 G A INPP1 Missense_Mutation p.G217E 0.33 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 2 191375184 191375184 C T TMEM194B Missense_Mutation p.A345T 0.17 tolerated(0.46) benign(0.038) TCGA-F4-6570-01 2 196825397 196825397 T - DNAH7 Frame_Shift_Del p.V827* 0.26 TCGA-F4-6570-01 2 196866472 196866472 A C DNAH7 Missense_Mutation p.L367R 0.26 deleterious(0) probably_damaging(0.982) TCGA-F4-6570-01 2 197511222 197511222 A - CCDC150 Frame_Shift_Del p.R59Efs*10 0.23 TCGA-F4-6570-01 2 197791356 197791356 G A PGAP1 5'UTR 0.45 TCGA-F4-6570-01 2 198950607 198950607 C A PLCL1 Missense_Mutation p.P789H 0.27 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 2 202151432 202151432 G A CASP8 3'UTR 0.35 TCGA-F4-6570-01 2 202568905 202568905 C A ALS2 Missense_Mutation p.E1625D 0.15 tolerated(0.2) possibly_damaging(0.499) TCGA-F4-6570-01 2 203329695 203329695 A - BMPR2 Frame_Shift_Del p.K81Nfs*20 0.12 TCGA-F4-6570-01 2 203395543 203395543 C T BMPR2 Nonsense_Mutation p.R332* 0.18 TCGA-F4-6570-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.44 TCGA-F4-6570-01 2 20402090 20402090 C - SDC1 3'UTR 0.33 TCGA-F4-6570-01 2 204259440 204259440 G A ABI2 Missense_Mutation p.R193H 0.09 deleterious(0.03) probably_damaging(0.973) TCGA-F4-6570-01 2 204599643 204599643 G A CD28 3'UTR 0.28 TCGA-F4-6570-01 2 204737595 204737596 - T CTLA4 3'UTR 0.21 TCGA-F4-6570-01 2 206614475 206614475 G T NRP2 Nonsense_Mutation p.G605* 0.32 TCGA-F4-6570-01 2 208811215 208811215 A G PLEKHM3 Missense_Mutation p.L523P 0.12 deleterious(0) probably_damaging(0.984) TCGA-F4-6570-01 2 210560565 210560565 C T MAP2 Missense_Mutation p.T1224M 0.18 deleterious_low_confidence(0) benign(0.001) TCGA-F4-6570-01 2 210574712 210574712 C T MAP2 Missense_Mutation p.P1603S 0.19 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 2 210968948 210968948 A T KANSL1L Silent p.A436A 0.09 TCGA-F4-6570-01 2 210968997 210968997 A T KANSL1L Missense_Mutation p.L420H 0.09 tolerated(0.26) possibly_damaging(0.882) TCGA-F4-6570-01 2 211342484 211342484 G A CPS1 5'UTR 0.12 TCGA-F4-6570-01 2 21233245 21233245 G T APOB Silent p.I2165I 0.20 TCGA-F4-6570-01 2 21233251 21233251 G T APOB Silent p.A2163A 0.19 TCGA-F4-6570-01 2 21234616 21234616 T C APOB Silent p.L1708L 0.25 TCGA-F4-6570-01 2 215917254 215917254 A - ABCA12 Frame_Shift_Del p.F155Sfs*17 0.16 TCGA-F4-6570-01 2 217341856 217341856 G A SMARCAL1 Missense_Mutation p.V818M 0.26 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 2 219000483 219000483 A C CXCR2 Missense_Mutation p.K320T 0.11 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 2 219114089 219114089 C A ARPC2 Missense_Mutation p.L227M 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-F4-6570-01 2 220012398 220012398 A G NHEJ1 Silent p.S170S 0.19 TCGA-F4-6570-01 2 220046949 220046949 G A FAM134A Silent p.T410T 0.40 TCGA-F4-6570-01 2 220155312 220155312 G A PTPRN Missense_Mutation p.A939V 0.26 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 2 220329189 220329189 C T SPEG Missense_Mutation p.R914W 0.40 probably_damaging(0.998) TCGA-F4-6570-01 2 224758960 224758960 G A WDFY1 Silent p.S274S 0.28 TCGA-F4-6570-01 2 225729660 225729660 C T DOCK10 Missense_Mutation p.D468N 0.31 tolerated(0.24) benign(0.001) TCGA-F4-6570-01 2 229890607 229890607 C T PID1 Missense_Mutation p.R163H 0.14 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 2 233198653 233198653 G A DIS3L2 Missense_Mutation p.R705H 0.43 deleterious(0) probably_damaging(0.945) TCGA-F4-6570-01 2 234394613 234394613 C T USP40 Missense_Mutation p.V1081M 0.36 tolerated(0.19) benign(0.202) TCGA-F4-6570-01 2 235950902 235950902 C T SH3BP4 Missense_Mutation p.H497Y 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-F4-6570-01 2 238233365 238233365 C T COL6A3 3'UTR 0.38 TCGA-F4-6570-01 2 24086326 24086326 A - ATAD2B Frame_Shift_Del p.F468Lfs*9 0.25 TCGA-F4-6570-01 2 241066285 241066285 C - MYEOV2 Frame_Shift_Del p.A152Rfs*4 0.34 TCGA-F4-6570-01 2 241390100 241390100 G - AC110619.2 Frame_Shift_Del p.Q103Kfs*30 0.54 TCGA-F4-6570-01 2 241401734 241401734 A G GPC1 Missense_Mutation p.Y151C 0.43 deleterious(0) probably_damaging(0.992) TCGA-F4-6570-01 2 241465688 241465688 G A ANKMY1 Silent p.D287D 0.28 TCGA-F4-6570-01 2 241534470 241534470 C T CAPN10 Missense_Mutation p.P343S 0.18 tolerated(0.38) benign(0.021) TCGA-F4-6570-01 2 241569966 241569966 C A GPR35 Silent p.A230A 0.33 TCGA-F4-6570-01 2 241991850 241991850 G A SNED1 Missense_Mutation p.C683Y 0.18 deleterious(0) possibly_damaging(0.897) TCGA-F4-6570-01 2 24526713 24526713 G A ITSN2 Missense_Mutation p.A271V 0.24 tolerated(0.19) probably_damaging(0.999) TCGA-F4-6570-01 2 25472582 25472582 G A DNMT3A Intron 0.33 TCGA-F4-6570-01 2 26435330 26435330 A T HADHA Intron 0.43 TCGA-F4-6570-01 2 26459742 26459743 - A HADHA Frame_Shift_Ins p.I99Yfs*5 0.27 TCGA-F4-6570-01 2 27352228 27352228 G A ABHD1 Missense_Mutation p.R168Q 0.41 deleterious(0.03) benign(0.007) TCGA-F4-6570-01 2 27439484 27439484 G A ATRAID Missense_Mutation p.R249H 0.35 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 2 27601720 27601720 G A ZNF513 Missense_Mutation p.P138L 0.38 tolerated(0.29) benign(0.002) TCGA-F4-6570-01 2 27677525 27677525 G A IFT172 Missense_Mutation p.S1125F 0.40 tolerated(0.29) benign(0.142) TCGA-F4-6570-01 2 29246052 29246052 G - FAM179A Frame_Shift_Del p.E539Rfs*24 0.28 TCGA-F4-6570-01 2 30976009 30976009 T A CAPN13 Missense_Mutation p.I333F 0.08 tolerated(0.23) benign(0.005) TCGA-F4-6570-01 2 31414847 31414847 C T CAPN14 Missense_Mutation p.C411Y 0.13 tolerated(0.08) benign(0.079) TCGA-F4-6570-01 2 33622217 33622217 G A LTBP1 Missense_Mutation p.E1618K 0.32 deleterious(0) probably_damaging(0.987) TCGA-F4-6570-01 2 3392292 3392292 A G TRAPPC12 Missense_Mutation p.M300V 0.22 deleterious(0.04) benign(0.441) TCGA-F4-6570-01 2 39095410 39095410 T C DHX57 Silent p.G46G 0.32 TCGA-F4-6570-01 2 40656327 40656327 C T SLC8A1 Missense_Mutation p.R365H 0.30 deleterious(0) probably_damaging(0.989) TCGA-F4-6570-01 2 42990015 42990016 - C OXER1 3'UTR 0.50 TCGA-F4-6570-01 2 44933448 44933448 G - CAMKMT Frame_Shift_Del p.G155Vfs*3 0.28 TCGA-F4-6570-01 2 45589 45589 C T FAM110C Missense_Mutation p.G266D 0.44 tolerated(0.11) benign(0.019) TCGA-F4-6570-01 2 48873757 48873757 A G STON1-GTF2A1L Missense_Mutation p.E889G 0.08 deleterious(0.02) possibly_damaging(0.676) TCGA-F4-6570-01 2 48925846 48925846 T - LHCGR Frame_Shift_Del p.K258Nfs*16 0.13 TCGA-F4-6570-01 2 48950667 48950667 A C LHCGR Missense_Mutation p.I155S 0.22 deleterious(0) probably_damaging(0.933) TCGA-F4-6570-01 2 50724496 50724496 A C NRXN1 Missense_Mutation p.F992V 0.17 deleterious(0) probably_damaging(0.972) TCGA-F4-6570-01 2 54081849 54081849 C T GPR75 Silent p.S15S 0.29 TCGA-F4-6570-01 2 54093345 54093345 T - PSME4 Frame_Shift_Del p.T1805Pfs*69 0.28 TCGA-F4-6570-01 2 58468420 58468420 C T FANCL Missense_Mutation p.R10H 0.33 deleterious(0.04) benign(0.019) TCGA-F4-6570-01 2 61014654 61014654 A G PAPOLG Missense_Mutation p.Y432C 0.34 tolerated(0.06) benign(0.07) TCGA-F4-6570-01 2 61417459 61417459 A G USP34 Missense_Mutation p.S3274P 0.31 tolerated(1) benign(0) TCGA-F4-6570-01 2 63272143 63272143 G - EHBP1 Intron 0.28 TCGA-F4-6570-01 2 68691336 68691336 T C FBXO48 3'UTR 0.07 TCGA-F4-6570-01 2 68872882 68872882 G A PROKR1 5'UTR 0.16 TCGA-F4-6570-01 2 69207131 69207131 C T GKN1 Silent p.F148F 0.33 TCGA-F4-6570-01 2 6991673 6991673 A T CMPK2 Missense_Mutation p.S378R 0.19 deleterious(0.03) benign(0.056) TCGA-F4-6570-01 2 70188239 70188239 C A ASPRV1 Missense_Mutation p.K194N 0.19 tolerated(0.09) probably_damaging(0.994) TCGA-F4-6570-01 2 70188512 70188512 C T ASPRV1 Silent p.P103P 0.15 TCGA-F4-6570-01 2 73466821 73466821 C - CCT7 Frame_Shift_Del p.Q21Sfs*3 0.27 TCGA-F4-6570-01 2 73519428 73519428 C T EGR4 Silent p.A309A 0.13 TCGA-F4-6570-01 2 73676552 73676552 G A ALMS1 Silent p.Q965Q 0.16 TCGA-F4-6570-01 2 74317025 74317025 C T TET3 Missense_Mutation p.R829W 0.09 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 2 74688005 74688005 A G WBP1 3'UTR 0.25 TCGA-F4-6570-01 2 74708664 74708664 T A CCDC142 Silent p.A341A 0.10 TCGA-F4-6570-01 2 85598241 85598241 G A ELMOD3 Silent p.G131G 0.15 TCGA-F4-6570-01 2 86259473 86259473 C - POLR1A Frame_Shift_Del p.H1399Tfs*70 0.41 TCGA-F4-6570-01 2 88857327 88857327 C T EIF2AK3 Missense_Mutation p.R1093H 0.20 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 2 88913303 88913303 T - EIF2AK3 Frame_Shift_Del p.K126Sfs*27 0.27 TCGA-F4-6570-01 2 89087857 89087857 C A ANKRD36BP2 RNA 0.24 TCGA-F4-6570-01 2 90212166 90212166 G A IGKV3D-11 Silent p.G86G 0.29 TCGA-F4-6570-01 2 9543421 9543421 T A ASAP2 Missense_Mutation p.F996I 0.10 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 2 9543423 9543423 C A ASAP2 Missense_Mutation p.F996L 0.23 deleterious(0) probably_damaging(0.996) TCGA-F4-6570-01 2 95940438 95940438 G A PROM2 Silent p.P35P 0.30 TCGA-F4-6570-01 2 96696530 96696530 G - GPAT2 Frame_Shift_Del p.C107Afs*35 0.09 TCGA-F4-6570-01 2 97749489 97749489 C A FAHD2B 3'UTR 0.19 TCGA-F4-6570-01 2 97749724 97749725 - G FAHD2B Frame_Shift_Ins p.G282Rfs*17 0.09 TCGA-F4-6570-01 2 98196931 98196931 A G ANKRD36B RNA 0.22 TCGA-F4-6570-01 2 98409299 98409299 C T TMEM131 Missense_Mutation p.V1232M 0.19 tolerated_low_confidence(0.09) benign(0.244) TCGA-F4-6570-01 2 98750294 98750294 G A VWA3B Missense_Mutation p.A294T 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-F4-6570-01 3 100605048 100605048 A G ABI3BP Missense_Mutation p.V201A 0.28 deleterious(0) benign(0.153) TCGA-F4-6570-01 3 102187857 102187857 C T ZPLD1 Missense_Mutation p.R287W 0.30 tolerated(0.18) possibly_damaging(0.663) TCGA-F4-6570-01 3 11078585 11078585 T G SLC6A1 Missense_Mutation p.V578G 0.21 tolerated(0.42) benign(0.001) TCGA-F4-6570-01 3 111732266 111732266 G A TAGLN3 Silent p.Q156Q 0.28 TCGA-F4-6570-01 3 111999594 111999594 G T SLC9C1 Missense_Mutation p.P42H 0.26 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 3 113374537 113374537 A G KIAA2018 Missense_Mutation p.S1998P 0.30 possibly_damaging(0.827) TCGA-F4-6570-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.39 TCGA-F4-6570-01 3 119585470 119585470 C T GSK3B Silent p.S305S 0.25 TCGA-F4-6570-01 3 120500292 120500292 G A GTF2E1 Missense_Mutation p.R432H 0.33 deleterious(0.03) possibly_damaging(0.564) TCGA-F4-6570-01 3 121412799 121412799 G - GOLGB1 Frame_Shift_Del p.Q2191Sfs*19 0.26 TCGA-F4-6570-01 3 121630447 121630447 A G SLC15A2 Missense_Mutation p.Y121C 0.31 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 3 121976092 121976092 A - CASR Frame_Shift_Del p.N118Tfs*6 0.18 TCGA-F4-6570-01 3 122334667 122334667 C A PARP15 Silent p.P271P 0.31 TCGA-F4-6570-01 3 122437651 122437651 G A PARP14 Missense_Mutation p.M1551I 0.21 tolerated(1) benign(0.002) TCGA-F4-6570-01 3 123665727 123665727 T - CCDC14 Frame_Shift_Del p.N382Mfs*2 0.26 TCGA-F4-6570-01 3 124436191 124436191 C T KALRN Nonsense_Mutation p.Q1095* 0.19 TCGA-F4-6570-01 3 124732616 124732617 - A HEG1 Frame_Shift_Ins p.H603Sfs*5 0.27 TCGA-F4-6570-01 3 124952059 124952059 G A ZNF148 Missense_Mutation p.A504V 0.33 tolerated(0.4) benign(0.017) TCGA-F4-6570-01 3 127703079 127703079 C - KBTBD12 Frame_Shift_Del p.P612Rfs*78 0.20 TCGA-F4-6570-01 3 127788405 127788405 G T SEC61A1 Missense_Mutation p.G444V 0.10 deleterious(0.01) probably_damaging(1) TCGA-F4-6570-01 3 128182617 128182617 C T DNAJB8 5'UTR 0.33 TCGA-F4-6570-01 3 128292935 128292935 C T C3orf27 5'UTR 0.30 TCGA-F4-6570-01 3 129285409 129285409 G T PLXND1 Silent p.S1384S 0.28 TCGA-F4-6570-01 3 137843566 137843566 C T A4GNT Missense_Mutation p.R188Q 0.27 tolerated(1) benign(0.004) TCGA-F4-6570-01 3 138665338 138665338 G A FOXL2 Missense_Mutation p.T76M 0.44 deleterious(0) probably_damaging(0.984) TCGA-F4-6570-01 3 138762971 138762971 C T PRR23C Silent p.P164P 0.27 TCGA-F4-6570-01 3 139180990 139180990 G A RBP2 Silent p.D72D 0.30 TCGA-F4-6570-01 3 141499224 141499224 C T GRK7 Silent p.A207A 0.37 TCGA-F4-6570-01 3 142503601 142503601 T A TRPC1 Missense_Mutation p.M339K 0.07 deleterious(0) benign(0.055) TCGA-F4-6570-01 3 14549157 14549157 G A GRIP2 RNA 0.14 TCGA-F4-6570-01 3 148601586 148601586 C G CPA3 Missense_Mutation p.P322R 0.33 deleterious(0.04) benign(0.133) TCGA-F4-6570-01 3 149051101 149051101 G T TM4SF18 Silent p.I23I 0.25 TCGA-F4-6570-01 3 150883245 150883245 A G MED12L Silent p.K432K 0.30 TCGA-F4-6570-01 3 150931886 150931886 A C P2RY14 Silent p.T73T 0.26 TCGA-F4-6570-01 3 151163570 151163570 T - IGSF10 Frame_Shift_Del p.N1400Tfs*18 0.30 TCGA-F4-6570-01 3 15131979 15131980 CT - ZFYVE20 Frame_Shift_Del p.E72Vfs*7 0.19 TCGA-F4-6570-01 3 15498034 15498034 G A COLQ Missense_Mutation p.A336V 0.19 tolerated(0.1) unknown(0) TCGA-F4-6570-01 3 15731568 15731568 C T ANKRD28 Missense_Mutation p.V611I 0.09 tolerated(0.15) benign(0.396) TCGA-F4-6570-01 3 158363451 158363451 G T GFM1 Missense_Mutation p.G39W 0.09 deleterious(0) benign(0.438) TCGA-F4-6570-01 3 159610030 159610030 A C IQCJ-SCHIP1 Intron 0.17 TCGA-F4-6570-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.31 TCGA-F4-6570-01 3 169500313 169500313 C A MYNN Silent p.A427A 0.41 TCGA-F4-6570-01 3 169802275 169802275 G A GPR160 Missense_Mutation p.R172H 0.34 tolerated(0.51) benign(0) TCGA-F4-6570-01 3 169846862 169846862 G T PHC3 Silent p.S466S 0.36 TCGA-F4-6570-01 3 170908528 170908528 C A TNIK Missense_Mutation p.G156W 0.30 deleterious(0) unknown(0) TCGA-F4-6570-01 3 172534527 172534527 G A ECT2 Missense_Mutation p.R852Q 0.28 tolerated(1) benign(0.003) TCGA-F4-6570-01 3 178937438 178937438 C A PIK3CA Missense_Mutation p.P609H 0.28 tolerated(0.55) possibly_damaging(0.612) TCGA-F4-6570-01 3 179448421 179448421 G A USP13 Missense_Mutation p.G393D 0.14 deleterious(0) probably_damaging(0.995) TCGA-F4-6570-01 3 180694024 180694024 A G FXR1 Missense_Mutation p.N604D 0.20 tolerated_low_confidence(0.07) benign(0.075) TCGA-F4-6570-01 3 183028715 183028715 G A MCF2L2 Silent p.H327H 0.32 TCGA-F4-6570-01 3 183976223 183976223 C T ECE2 Intron 0.50 TCGA-F4-6570-01 3 184038752 184038752 C T EIF4G1 Missense_Mutation p.T230M 0.26 deleterious(0.02) benign(0.38) TCGA-F4-6570-01 3 185155359 185155359 G T MAP3K13 Missense_Mutation p.Q200H 0.14 tolerated(0.14) probably_damaging(0.968) TCGA-F4-6570-01 3 185641724 185641724 A G TRA2B Missense_Mutation p.Y128H 0.38 deleterious(0.04) benign(0.162) TCGA-F4-6570-01 3 190338187 190338187 C T IL1RAP Missense_Mutation p.R221C 0.14 deleterious(0) probably_damaging(0.987) TCGA-F4-6570-01 3 193051598 193051598 G T ATP13A5 Missense_Mutation p.L405M 0.24 deleterious(0.01) probably_damaging(0.964) TCGA-F4-6570-01 3 194309261 194309263 ATC - TMEM44 In_Frame_Del p.D475del 0.38 TCGA-F4-6570-01 3 195453133 195453133 C T MUC20 Silent p.S553S 0.25 TCGA-F4-6570-01 3 195507516 195507516 G A MUC4 Silent p.D3645D 0.10 TCGA-F4-6570-01 3 195510011 195510011 C T MUC4 Missense_Mutation p.A2814T 0.52 benign(0.044) TCGA-F4-6570-01 3 196050725 196050725 C A TM4SF19 Missense_Mutation p.S198I 0.15 deleterious(0) probably_damaging(0.911) TCGA-F4-6570-01 3 196118794 196118794 G A UBXN7 Missense_Mutation p.R120W 0.14 deleterious(0.02) benign(0.126) TCGA-F4-6570-01 3 196434521 196434523 CTT - CEP19 In_Frame_Del p.K135del 0.28 TCGA-F4-6570-01 3 196554173 196554173 A - PAK2 Frame_Shift_Del p.R488Gfs*13 0.28 TCGA-F4-6570-01 3 197670811 197670811 T C IQCG Silent p.E40E 0.27 TCGA-F4-6570-01 3 32927475 32927475 C T TRIM71 Missense_Mutation p.A357V 0.27 tolerated(0.28) benign(0.172) TCGA-F4-6570-01 3 32931948 32931948 G A TRIM71 Missense_Mutation p.V418M 0.31 deleterious(0.01) benign(0.31) TCGA-F4-6570-01 3 33134922 33134922 G A TMPPE Missense_Mutation p.R256W 0.34 deleterious(0.01) benign(0.117) TCGA-F4-6570-01 3 33580290 33580290 A T CLASP2 Missense_Mutation p.D1191E 0.36 tolerated(0.21) benign(0.001) TCGA-F4-6570-01 3 37150153 37150153 A G LRRFIP2 Missense_Mutation p.L211S 0.46 deleterious(0.01) benign(0.027) TCGA-F4-6570-01 3 37555306 37555306 G A ITGA9 Missense_Mutation p.G317D 0.12 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 3 38178609 38178609 A G ACAA1 5'UTR 0.42 TCGA-F4-6570-01 3 3886823 3886823 A - LRRN1 Frame_Shift_Del p.N168Ifs*3 0.38 TCGA-F4-6570-01 3 39140364 39140364 T A GORASP1 Missense_Mutation p.I313F 0.40 deleterious(0) benign(0.288) TCGA-F4-6570-01 3 39228904 39228904 C T XIRP1 Missense_Mutation p.R678Q 0.45 tolerated(0.37) benign(0.072) TCGA-F4-6570-01 3 39307598 39307598 C T CX3CR1 Missense_Mutation p.A167T 0.19 tolerated(0.16) benign(0.061) TCGA-F4-6570-01 3 42242544 42242544 G - TRAK1 Frame_Shift_Del 0.42 TCGA-F4-6570-01 3 42741312 42741312 C G HHATL Missense_Mutation p.A38P 0.27 tolerated(0.1) possibly_damaging(0.616) TCGA-F4-6570-01 3 44701540 44701540 C A ZNF35 3'UTR 0.40 TCGA-F4-6570-01 3 46753726 46753726 G A PRSS50 3'UTR 0.29 TCGA-F4-6570-01 3 47041708 47041708 T C NBEAL2 Silent p.G1373G 0.26 TCGA-F4-6570-01 3 47048602 47048602 G A NBEAL2 Missense_Mutation p.R2394Q 0.36 deleterious(0.03) benign(0.002) TCGA-F4-6570-01 3 4776937 4776937 C A ITPR1 Missense_Mutation p.L1800I 0.25 deleterious(0) probably_damaging(0.99) TCGA-F4-6570-01 3 48602626 48602626 G A COL7A1 Missense_Mutation p.P2846S 0.17 benign(0.395) TCGA-F4-6570-01 3 49147970 49147970 C A USP19 Missense_Mutation p.A1254S 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-F4-6570-01 3 49690305 49690305 A G BSN Missense_Mutation p.T1106A 0.38 benign(0.184) TCGA-F4-6570-01 3 49723754 49723754 G A MST1 Silent p.Y336Y 0.11 TCGA-F4-6570-01 3 49756837 49756837 G A AMIGO3 Missense_Mutation p.P21L 0.19 tolerated_low_confidence(0.73) benign(0) TCGA-F4-6570-01 3 49758062 49758062 C T RNF123 Missense_Mutation p.R1207W 0.21 deleterious(0.02) benign(0.28) TCGA-F4-6570-01 3 50095346 50095346 C T RBM6 Missense_Mutation p.P627S 0.31 tolerated(0.11) possibly_damaging(0.529) TCGA-F4-6570-01 3 50138096 50138097 - A RBM5 Intron 0.20 TCGA-F4-6570-01 3 51432717 51432717 G - RBM15B 3'UTR 0.13 TCGA-F4-6570-01 3 52085110 52085110 G A DUSP7 Silent p.V327V 0.32 TCGA-F4-6570-01 3 52257214 52257214 C T TLR9 Missense_Mutation p.G527D 0.32 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 3 52387532 52387532 T A DNAH1 Missense_Mutation p.N1121K 0.38 benign(0.01) TCGA-F4-6570-01 3 52420214 52420214 G A DNAH1 Silent p.V2888V 0.33 TCGA-F4-6570-01 3 52828902 52828902 G A ITIH3 Missense_Mutation p.R28Q 0.35 tolerated(0.18) benign(0.01) TCGA-F4-6570-01 3 54958873 54958873 T G LRTM1 Missense_Mutation p.E126A 0.24 tolerated(0.07) benign(0.446) TCGA-F4-6570-01 3 56591204 56591204 A G CCDC66 5'UTR 0.33 TCGA-F4-6570-01 3 56649202 56649202 G A CCDC66 Missense_Mutation p.R538Q 0.33 deleterious(0) possibly_damaging(0.796) TCGA-F4-6570-01 3 56667597 56667597 C T FAM208A Silent p.V1074V 0.33 TCGA-F4-6570-01 3 57414101 57414101 A C DNAH12 Missense_Mutation p.F1753C 0.16 tolerated(0.18) benign(0.02) TCGA-F4-6570-01 3 58139271 58139271 C T FLNB Silent p.S2210S 0.17 TCGA-F4-6570-01 3 62248416 62248416 A G PTPRG Intron 0.20 TCGA-F4-6570-01 3 65342450 65342450 C T MAGI1 Missense_Mutation p.R1331H 0.38 tolerated(0.07) possibly_damaging(0.868) TCGA-F4-6570-01 3 70008488 70008488 C T MITF Nonsense_Mutation p.R360* 0.29 TCGA-F4-6570-01 3 74313649 74313649 A G CNTN3 Missense_Mutation p.M997T 0.25 tolerated(0.32) benign(0.001) TCGA-F4-6570-01 3 77089921 77089921 T - ROBO2 Intron 0.15 TCGA-F4-6570-01 3 8809556 8809556 G A OXTR Silent p.Y106Y 0.31 TCGA-F4-6570-01 3 9055478 9055478 A G SRGAP3 Missense_Mutation p.V621A 0.22 tolerated(0.61) benign(0.004) TCGA-F4-6570-01 3 93780438 93780438 T - DHFRL1 5'UTR 0.17 TCGA-F4-6570-01 3 9484995 9484995 C T SETD5 Nonsense_Mutation p.R361* 0.26 TCGA-F4-6570-01 3 97503824 97503824 A G ARL6 Missense_Mutation p.I94V 0.12 tolerated(0.62) benign(0.038) TCGA-F4-6570-01 3 9775871 9775871 C T BRPF1 Missense_Mutation p.A16V 0.42 deleterious(0) probably_damaging(0.994) TCGA-F4-6570-01 3 9798261 9798261 C T OGG1 Missense_Mutation p.T285M 0.31 tolerated(0.13) benign(0.001) TCGA-F4-6570-01 3 97983799 97983799 T - OR5H6 Frame_Shift_Del p.F225Lfs*18 0.22 TCGA-F4-6570-01 3 9825891 9825891 C T TADA3 Silent p.P309P 0.21 TCGA-F4-6570-01 3 98519494 98519494 C T DCBLD2 Missense_Mutation p.R596H 0.34 deleterious(0.03) benign(0.022) TCGA-F4-6570-01 3 98519572 98519572 C T DCBLD2 Intron 0.28 TCGA-F4-6570-01 3 9991568 9991568 C T PRRT3 Missense_Mutation p.A78T 0.28 tolerated_low_confidence(0.47) benign(0.009) TCGA-F4-6570-01 4 100239278 100239278 G - ADH1B Frame_Shift_Del p.L62Ffs*3 0.31 TCGA-F4-6570-01 4 100534288 100534288 T C MTTP Silent p.D736D 0.33 TCGA-F4-6570-01 4 102030195 102030195 C T PPP3CA Silent p.K100K 0.32 TCGA-F4-6570-01 4 103866373 103866373 G T SLC9B1 Silent p.P210P 0.30 TCGA-F4-6570-01 4 103867925 103867925 G A SLC9B1 Missense_Mutation p.T135M 0.09 tolerated(0.08) benign(0.028) TCGA-F4-6570-01 4 104029978 104029978 T C CENPE Missense_Mutation p.S2665G 0.10 benign(0.003) TCGA-F4-6570-01 4 1079711 1079711 G T RNF212 Nonsense_Mutation p.S112* 0.31 TCGA-F4-6570-01 4 113436104 113436104 G A NEUROG2 Silent p.G176G 0.39 TCGA-F4-6570-01 4 114275601 114275601 G A ANK2 Missense_Mutation p.G1943R 0.32 possibly_damaging(0.639) TCGA-F4-6570-01 4 114378559 114378559 C A CAMK2D Missense_Mutation p.W455C 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F4-6570-01 4 1161194 1161194 A C SPON2 3'UTR 0.31 TCGA-F4-6570-01 4 119064771 119064771 G - NDST3 Frame_Shift_Del p.G492Vfs*27 0.30 TCGA-F4-6570-01 4 122589485 122589485 G A ANXA5 3'UTR 0.20 TCGA-F4-6570-01 4 123168412 123168412 A T KIAA1109 Silent p.G1804G 0.18 TCGA-F4-6570-01 4 1232018 1232018 T C CTBP1 Missense_Mutation p.T50A 0.18 deleterious(0.02) possibly_damaging(0.853) TCGA-F4-6570-01 4 123264628 123264628 C T KIAA1109 Missense_Mutation p.T4139I 0.32 probably_damaging(0.92) TCGA-F4-6570-01 4 123342440 123342440 A G ADAD1 Silent p.S504S 0.37 TCGA-F4-6570-01 4 123664110 123664110 C T BBS12 Nonsense_Mutation p.R355* 0.17 TCGA-F4-6570-01 4 1246406 1246407 - T CTBP1 5'Flank 0.22 TCGA-F4-6570-01 4 125591555 125591555 A G ANKRD50 Silent p.L959L 0.09 TCGA-F4-6570-01 4 126328144 126328144 G A FAT4 Missense_Mutation p.R1806H 0.10 benign(0.066) TCGA-F4-6570-01 4 129764179 129764179 C T JADE1 Nonsense_Mutation p.R42* 0.25 TCGA-F4-6570-01 4 129770218 129770219 GC - JADE1 Frame_Shift_Del p.G127Vfs*9 0.24 TCGA-F4-6570-01 4 135121683 135121683 G A PABPC4L Silent p.G222G 0.13 TCGA-F4-6570-01 4 141294835 141294835 G A SCOC Missense_Mutation p.A49T 0.23 tolerated_low_confidence(0.42) benign(0.011) TCGA-F4-6570-01 4 142950056 142950056 C T INPP4B Missense_Mutation p.R885H 0.18 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 4 147560286 147560286 C T POU4F2 5'UTR 0.32 TCGA-F4-6570-01 4 151504663 151504663 G A MAB21L2 Missense_Mutation p.R161H 0.42 deleterious(0.04) probably_damaging(0.953) TCGA-F4-6570-01 4 152058914 152058914 G A SH3D19 Silent p.G542G 0.39 TCGA-F4-6570-01 4 152201007 152201007 C T PRSS48 Missense_Mutation p.R38C 0.33 deleterious(0) benign(0.024) TCGA-F4-6570-01 4 154243886 154243886 G A TRIM2 Silent p.A623A 0.17 TCGA-F4-6570-01 4 154625080 154625080 A T TLR2 Missense_Mutation p.I341F 0.09 deleterious(0) probably_damaging(0.939) TCGA-F4-6570-01 4 155157158 155157158 T G DCHS2 Missense_Mutation p.Q2427H 0.26 deleterious(0) probably_damaging(0.993) TCGA-F4-6570-01 4 155157524 155157524 C T DCHS2 Silent p.L2305L 0.26 TCGA-F4-6570-01 4 155219391 155219391 T G DCHS2 Missense_Mutation p.K1570N 0.12 tolerated(0.37) benign(0.016) TCGA-F4-6570-01 4 159156651 159156651 G T TMEM144 Missense_Mutation p.R186L 0.31 deleterious(0) probably_damaging(0.91) TCGA-F4-6570-01 4 163032461 163032461 G A FSTL5 Missense_Mutation p.L30F 0.21 tolerated_low_confidence(0.72) benign(0.117) TCGA-F4-6570-01 4 166924698 166924698 T C TLL1 Missense_Mutation p.I263T 0.34 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 4 166946571 166946571 C A TLL1 Silent p.T382T 0.31 TCGA-F4-6570-01 4 170611780 170611780 G T CLCN3 Missense_Mutation p.A236S 0.29 deleterious(0.02) possibly_damaging(0.673) TCGA-F4-6570-01 4 177605194 177605194 G T VEGFC Missense_Mutation p.S382R 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-F4-6570-01 4 178243680 178243680 G A NEIL3 Missense_Mutation p.G75D 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-F4-6570-01 4 1808986 1808986 G A FGFR3 Silent p.T808T 0.27 TCGA-F4-6570-01 4 183650167 183650167 C T TENM3 Silent p.C806C 0.30 TCGA-F4-6570-01 4 183710531 183710531 T A TENM3 Missense_Mutation p.Y1864N 0.23 deleterious(0) possibly_damaging(0.86) TCGA-F4-6570-01 4 184368383 184368383 T G CDKN2AIP Missense_Mutation p.C516G 0.14 deleterious(0.01) possibly_damaging(0.885) TCGA-F4-6570-01 4 184932247 184932247 A C STOX2 Missense_Mutation p.Q752H 0.14 deleterious_low_confidence(0.04) benign(0.423) TCGA-F4-6570-01 4 185311894 185311894 G A IRF2 Missense_Mutation p.T235M 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-F4-6570-01 4 186380117 186380117 C T CCDC110 Missense_Mutation p.A542T 0.14 tolerated(1) benign(0.003) TCGA-F4-6570-01 4 186545255 186545255 C T SORBS2 Missense_Mutation p.R539K 0.42 tolerated(0.22) probably_damaging(0.99) TCGA-F4-6570-01 4 187540205 187540205 A G FAT1 Missense_Mutation p.M2512T 0.32 benign(0) TCGA-F4-6570-01 4 189026388 189026388 C A TRIML2 5'UTR 0.26 TCGA-F4-6570-01 4 189068102 189068102 C T TRIML1 Missense_Mutation p.A328V 0.32 tolerated(0.18) probably_damaging(0.999) TCGA-F4-6570-01 4 2172860 2172860 G A POLN Missense_Mutation p.R475W 0.13 deleterious(0) possibly_damaging(0.802) TCGA-F4-6570-01 4 2242244 2242246 CTT - HAUS3 In_Frame_Del p.E143del 0.29 TCGA-F4-6570-01 4 24557968 24557968 A G DHX15 Missense_Mutation p.V256A 0.12 tolerated(0.07) benign(0.019) TCGA-F4-6570-01 4 24833140 24833140 C A CCDC149 Missense_Mutation p.R318M 0.25 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 4 25780793 25780793 C T SEL1L3 Silent p.A830A 0.19 TCGA-F4-6570-01 4 2930185 2930185 A - ADD1 Frame_Shift_Del p.K749Rfs*11 0.28 TCGA-F4-6570-01 4 3189563 3189563 A T HTT Missense_Mutation p.E1725D 0.36 benign(0.003) TCGA-F4-6570-01 4 367389 367389 T A ZNF141 Missense_Mutation p.I388N 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-F4-6570-01 4 37446167 37446167 G A KIAA1239 Missense_Mutation p.G853S 0.19 tolerated(0.54) benign(0.139) TCGA-F4-6570-01 4 3768996 3768996 G A ADRA2C Silent p.A221A 0.17 TCGA-F4-6570-01 4 3769431 3769431 C T ADRA2C Silent p.S366S 0.43 TCGA-F4-6570-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.29 TCGA-F4-6570-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.27 TCGA-F4-6570-01 4 39064307 39064307 A G KLHL5 Missense_Mutation p.Q58R 0.39 deleterious_low_confidence(0.01) benign(0.004) TCGA-F4-6570-01 4 39077666 39077666 T G KLHL5 Missense_Mutation p.N201K 0.14 tolerated(0.31) benign(0.115) TCGA-F4-6570-01 4 41992654 41992654 C A SLC30A9 5'UTR 0.26 TCGA-F4-6570-01 4 4199660 4199660 G A OTOP1 Missense_Mutation p.H301Y 0.22 tolerated(0.37) benign(0.088) TCGA-F4-6570-01 4 4317620 4317621 - T ZBTB49 Frame_Shift_Ins p.N517* 0.14 TCGA-F4-6570-01 4 46994901 46994901 C T GABRA4 Missense_Mutation p.R50H 0.32 deleterious(0.05) benign(0.077) TCGA-F4-6570-01 4 48490947 48490948 TT - SLC10A4 Frame_Shift_Del p.*438Nfs*22 0.24 TCGA-F4-6570-01 4 48581032 48581032 G A FRYL Missense_Mutation p.A829V 0.17 tolerated(0.77) benign(0.011) TCGA-F4-6570-01 4 527707 527707 C T PIGG Missense_Mutation p.T891M 0.15 deleterious(0) probably_damaging(0.987) TCGA-F4-6570-01 4 55141027 55141027 G A PDGFRA Missense_Mutation p.R558H 0.13 deleterious(0) probably_damaging(0.978) TCGA-F4-6570-01 4 55603346 55603346 A G KIT Missense_Mutation p.D901G 0.28 deleterious(0.02) possibly_damaging(0.865) TCGA-F4-6570-01 4 56830555 56830555 A G CEP135 Missense_Mutation p.H272R 0.28 deleterious(0.03) possibly_damaging(0.818) TCGA-F4-6570-01 4 56847496 56847496 A G CEP135 Missense_Mutation p.D577G 0.25 deleterious(0.01) probably_damaging(0.953) TCGA-F4-6570-01 4 57871589 57871589 A - POLR2B Frame_Shift_Del p.A362Pfs*21 0.31 TCGA-F4-6570-01 4 5830320 5830320 C T CRMP1 Missense_Mutation p.V567I 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-F4-6570-01 4 5868445 5868445 G A CRMP1 Silent p.N140N 0.20 TCGA-F4-6570-01 4 6087175 6087175 C T JAKMIP1 Missense_Mutation p.G269E 0.45 deleterious(0.01) benign(0.133) TCGA-F4-6570-01 4 6642902 6642902 A G MRFAP1 Missense_Mutation p.K105E 0.17 tolerated(0.23) benign(0.003) TCGA-F4-6570-01 4 68384936 68384936 T - CENPC Frame_Shift_Del p.R206Gfs*2 0.30 TCGA-F4-6570-01 4 69198527 69198527 G A YTHDC1 Missense_Mutation p.R338C 0.23 deleterious(0) possibly_damaging(0.677) TCGA-F4-6570-01 4 7044268 7044268 G A CCDC96 Missense_Mutation p.A133V 0.19 tolerated_low_confidence(0.29) benign(0) TCGA-F4-6570-01 4 70455098 70455098 T - UGT2A1 Frame_Shift_Del p.R692Efs*57 0.25 TCGA-F4-6570-01 4 70505291 70505291 A G UGT2A2 Missense_Mutation p.L23P 0.28 tolerated(0.16) benign(0.005) TCGA-F4-6570-01 4 71554407 71554408 - C UTP3 Frame_Shift_Ins p.R6Pfs*7 0.35 TCGA-F4-6570-01 4 77678089 77678089 A G SHROOM3 Missense_Mutation p.R1733G 0.20 deleterious(0.01) possibly_damaging(0.696) TCGA-F4-6570-01 4 77926886 77926886 T C SEPT11 Missense_Mutation p.V92A 0.15 deleterious(0) probably_damaging(0.957) TCGA-F4-6570-01 4 79403674 79403674 G A FRAS1 Missense_Mutation p.D2913N 0.29 probably_damaging(0.981) TCGA-F4-6570-01 4 8211493 8211493 G A SH3TC1 Missense_Mutation p.R64H 0.23 tolerated(0.12) benign(0.001) TCGA-F4-6570-01 4 83778138 83778138 T - SEC31A Frame_Shift_Del p.K616Nfs*18 0.25 TCGA-F4-6570-01 4 84519316 84519316 C T AGPAT9 Missense_Mutation p.P370L 0.31 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 4 85594125 85594125 C A WDFY3 Nonsense_Mutation p.E3493* 0.22 TCGA-F4-6570-01 4 85660273 85660273 C T WDFY3 Splice_Site p.X2155_splice 0.18 TCGA-F4-6570-01 4 88536291 88536291 G A DSPP Missense_Mutation p.S826N 0.30 unknown(0) TCGA-F4-6570-01 4 89356967 89356967 C T HERC6 Silent p.L781L 0.21 TCGA-F4-6570-01 4 90034520 90034520 G A TIGD2 Missense_Mutation p.R132H 0.31 deleterious(0.01) probably_damaging(1) TCGA-F4-6570-01 4 94693597 94693597 C T GRID2 Missense_Mutation p.P991L 0.30 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-F4-6570-01 4 96470046 96470046 A G UNC5C 5'UTR 0.34 TCGA-F4-6570-01 4 96761843 96761843 A G PDHA2 Missense_Mutation p.Y181C 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-F4-6570-01 4 9785349 9785349 G C DRD5 3'UTR 0.22 TCGA-F4-6570-01 4 99806159 99806159 G A EIF4E Silent p.G182G 0.09 TCGA-F4-6570-01 5 1053545 1053545 C T SLC12A7 Missense_Mutation p.V1027I 0.29 tolerated(1) benign(0.004) TCGA-F4-6570-01 5 109904194 109904194 T A TMEM232 Missense_Mutation p.D470V 0.24 deleterious(0.04) possibly_damaging(0.509) TCGA-F4-6570-01 5 111598212 111598212 G A EPB41L4A Silent p.G207G 0.21 TCGA-F4-6570-01 5 112770606 112770606 C T TSSK1B 5'UTR 0.10 TCGA-F4-6570-01 5 11364853 11364853 C - CTNND2 Frame_Shift_Del p.D443Tfs*113 0.32 TCGA-F4-6570-01 5 113808816 113808816 A C KCNN2 Missense_Mutation p.E403D 0.10 deleterious(0) benign(0.173) TCGA-F4-6570-01 5 115815898 115815898 G A SEMA6A Silent p.N390N 0.35 TCGA-F4-6570-01 5 11732339 11732339 G A CTNND2 Missense_Mutation p.T28M 0.39 tolerated(0.1) benign(0.411) TCGA-F4-6570-01 5 118485098 118485098 G A DMXL1 Silent p.V1192V 0.18 TCGA-F4-6570-01 5 121736753 121736753 T C SNCAIP Intron 0.26 TCGA-F4-6570-01 5 123983567 123983567 C T ZNF608 Missense_Mutation p.G837E 0.39 tolerated(0.14) possibly_damaging(0.849) TCGA-F4-6570-01 5 123984456 123984456 T C ZNF608 Missense_Mutation p.T541A 0.31 tolerated(0.75) benign(0.002) TCGA-F4-6570-01 5 125971863 125971863 C A C5orf48 Missense_Mutation p.P112H 0.30 tolerated(0.05) probably_damaging(1) TCGA-F4-6570-01 5 126887633 126887633 G A PRRC1 3'UTR 0.26 TCGA-F4-6570-01 5 130940388 130940388 T C RAPGEF6 Splice_Site p.X24_splice 0.30 TCGA-F4-6570-01 5 131796380 131796380 G A C5orf56 Missense_Mutation p.R72K 0.37 tolerated_low_confidence(0.18) benign(0.14) TCGA-F4-6570-01 5 134106623 134106623 G T DDX46 Silent p.G127G 0.29 TCGA-F4-6570-01 5 134294771 134294773 GAT - PCBD2 In_Frame_Del p.M87del 0.31 TCGA-F4-6570-01 5 137226194 137226194 A G PKD2L2 Missense_Mutation p.Y19C 0.10 tolerated(0.13) benign(0.072) TCGA-F4-6570-01 5 137278592 137278592 G A FAM13B Nonsense_Mutation p.R832* 0.23 TCGA-F4-6570-01 5 137292230 137292230 C T FAM13B Intron 0.15 TCGA-F4-6570-01 5 13786383 13786383 G A DNAH5 Missense_Mutation p.R2909C 0.48 possibly_damaging(0.689) TCGA-F4-6570-01 5 138145730 138145731 - T CTNNA1 Frame_Shift_Ins p.L103Ffs*12 0.12 TCGA-F4-6570-01 5 138268361 138268361 C T CTNNA1 Missense_Mutation p.A798V 0.22 deleterious(0) probably_damaging(0.982) TCGA-F4-6570-01 5 138269752 138269752 G A CTNNA1 Missense_Mutation p.E899K 0.43 deleterious(0) benign(0.288) TCGA-F4-6570-01 5 139680121 139680121 A G PFDN1 Missense_Mutation p.V27A 0.13 tolerated(0.07) benign(0.006) TCGA-F4-6570-01 5 139876453 139876454 AC - ANKHD1 Frame_Shift_Del p.T866Sfs*10 0.12 TCGA-F4-6570-01 5 140053168 140053168 C A HARS 3'UTR 0.21 TCGA-F4-6570-01 5 140174970 140174970 C T PCDHA2 Missense_Mutation p.R141W 0.31 deleterious_low_confidence(0.04) benign(0.001) TCGA-F4-6570-01 5 140176605 140176605 G A PCDHA2 Missense_Mutation p.A686T 0.39 tolerated_low_confidence(0.18) benign(0.012) TCGA-F4-6570-01 5 140188234 140188234 G A PCDHA4 Missense_Mutation p.A488T 0.36 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-F4-6570-01 5 140201623 140201623 G A PCDHA5 Missense_Mutation p.R88Q 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.799) TCGA-F4-6570-01 5 140223097 140223097 G A PCDHA8 Missense_Mutation p.G731R 0.34 tolerated_low_confidence(0.06) benign(0.001) TCGA-F4-6570-01 5 140242893 140242893 G T AC005609.1 Missense_Mutation p.T28K 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.742) TCGA-F4-6570-01 5 140255609 140255609 A - PCDHA12 Frame_Shift_Del p.D187Ifs*8 0.23 TCGA-F4-6570-01 5 140308254 140308254 A G PCDHAC1 Missense_Mutation p.N593D 0.28 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 5 140481456 140481456 C T PCDHB3 Missense_Mutation p.A408V 0.25 deleterious_low_confidence(0.03) benign(0.05) TCGA-F4-6570-01 5 140503865 140503865 A G PCDHB4 Missense_Mutation p.E762G 0.27 deleterious_low_confidence(0) benign(0.078) TCGA-F4-6570-01 5 140537693 140537693 G A PCDHB17 3'UTR 0.26 TCGA-F4-6570-01 5 140596462 140596462 T - PCDHB13 3'UTR 0.23 TCGA-F4-6570-01 5 140710511 140710511 C T PCDHGA1 Missense_Mutation p.A87V 0.13 deleterious_low_confidence(0.02) benign(0.146) TCGA-F4-6570-01 5 140755075 140755075 T C PCDHGA6 Silent p.N475N 0.30 TCGA-F4-6570-01 5 140755788 140755788 C T PCDHGA6 Missense_Mutation p.A713V 0.39 tolerated_low_confidence(0.1) benign(0.081) TCGA-F4-6570-01 5 140764011 140764011 C T PCDHGA7 Silent p.Y515Y 0.28 TCGA-F4-6570-01 5 140787870 140787870 G A PCDHGB6 Missense_Mutation p.R34H 0.28 tolerated(0.24) benign(0.11) TCGA-F4-6570-01 5 140802769 140802769 G A PCDHGA11 Missense_Mutation p.V659I 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.642) TCGA-F4-6570-01 5 140811001 140811001 C T PCDHGA12 Silent p.T225T 0.40 TCGA-F4-6570-01 5 140890730 140890732 AGA - PCDHGB6 In_Frame_Del p.K930del 0.31 TCGA-F4-6570-01 5 145651141 145651141 C T RBM27 Silent p.G964G 0.13 TCGA-F4-6570-01 5 146773619 146773619 A G DPYSL3 Silent p.S678S 0.30 TCGA-F4-6570-01 5 146777237 146777237 G A DPYSL3 Missense_Mutation p.R599W 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 5 14711209 14711209 A - ANKH 3'UTR 0.44 TCGA-F4-6570-01 5 149227007 149227008 - C PPARGC1B Intron 0.29 TCGA-F4-6570-01 5 149501588 149501588 G A PDGFRB Silent p.T733T 0.26 TCGA-F4-6570-01 5 149782775 149782775 C A CD74 Missense_Mutation p.Q242H 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 5 151231019 151231019 C T GLRA1 Missense_Mutation p.G282S 0.24 tolerated(0.26) benign(0.078) TCGA-F4-6570-01 5 151775109 151775109 G A NMUR2 Missense_Mutation p.P283L 0.17 deleterious(0) probably_damaging(0.984) TCGA-F4-6570-01 5 153077603 153077603 G A GRIA1 Splice_Site p.X389_splice 0.31 TCGA-F4-6570-01 5 153429203 153429203 A G MFAP3 5'UTR 0.29 TCGA-F4-6570-01 5 153789216 153789216 G A GALNT10 Missense_Mutation p.R427H 0.39 deleterious(0) possibly_damaging(0.812) TCGA-F4-6570-01 5 154282108 154282108 C A GEMIN5 Missense_Mutation p.A953S 0.13 tolerated(0.36) benign(0.088) TCGA-F4-6570-01 5 154393886 154393886 G A KIF4B Missense_Mutation p.R156H 0.20 tolerated(0.1) benign(0.009) TCGA-F4-6570-01 5 156894103 156894104 - T NIPAL4 Frame_Shift_Ins p.L172Sfs*69 0.27 TCGA-F4-6570-01 5 156917461 156917461 A G ADAM19 Silent p.S699S 0.25 TCGA-F4-6570-01 5 157107070 157107070 A C C5orf52 3'UTR 0.38 TCGA-F4-6570-01 5 15928259 15928259 C T FBXL7 Missense_Mutation p.P130S 0.28 tolerated(0.96) benign(0.012) TCGA-F4-6570-01 5 167851016 167851016 G A WWC1 Missense_Mutation p.A585T 0.16 tolerated(0.61) benign(0.001) TCGA-F4-6570-01 5 168096834 168096834 G T SLIT3 Silent p.P1430P 0.11 TCGA-F4-6570-01 5 168175368 168175368 G A SLIT3 Nonsense_Mutation p.R737* 0.15 TCGA-F4-6570-01 5 168310308 168310308 C T SLIT3 Silent p.P149P 0.43 TCGA-F4-6570-01 5 169472896 169472896 T C DOCK2 Missense_Mutation p.L1318P 0.34 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 5 169594 169594 G A PLEKHG4B Missense_Mutation p.V850I 0.28 tolerated(0.7) benign(0.042) TCGA-F4-6570-01 5 173317209 173317209 T C CPEB4 Missense_Mutation p.L158S 0.16 tolerated_low_confidence(0.95) benign(0.002) TCGA-F4-6570-01 5 176056600 176056600 G A SNCB Missense_Mutation p.A19V 0.21 tolerated(0.18) possibly_damaging(0.904) TCGA-F4-6570-01 5 176297475 176297475 G T UNC5A Nonsense_Mutation p.E276* 0.24 TCGA-F4-6570-01 5 176700728 176700728 A T NSD1 Missense_Mutation p.R1855S 0.15 deleterious(0.01) benign(0.391) TCGA-F4-6570-01 5 176814874 176814874 G A SLC34A1 Missense_Mutation p.R215Q 0.41 deleterious(0) probably_damaging(0.979) TCGA-F4-6570-01 5 176899130 176899130 C T DBN1 Missense_Mutation p.V28M 0.34 tolerated(0.26) benign(0.002) TCGA-F4-6570-01 5 177577990 177577990 T C NHP2 Missense_Mutation p.M79V 0.16 tolerated(1) benign(0.001) TCGA-F4-6570-01 5 178044361 178044361 G A CLK4 Silent p.D153D 0.31 TCGA-F4-6570-01 5 178373483 178373483 C T ZNF454 Silent p.L53L 0.23 TCGA-F4-6570-01 5 178540952 178540952 C T ADAMTS2 Silent p.P1184P 0.28 TCGA-F4-6570-01 5 178559313 178559313 T - ADAMTS2 Splice_Site p.X737_splice 0.32 TCGA-F4-6570-01 5 179225532 179225538 ACAGACG CCAGAC MGAT4B Frame_Shift_Del p.T481Sfs*72 0.09 TCGA-F4-6570-01 5 179290767 179290767 T G TBC1D9B Missense_Mutation p.D1145A 0.20 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-F4-6570-01 5 179564945 179564945 T C RASGEF1C Silent p.G36G 0.38 TCGA-F4-6570-01 5 180663920 180663942 ACCTAAAAGTCAGAAAAGCCAGT CCTAAAAGTCAGAAAAGCCAG GNB2L1 3'UTR 0.44 TCGA-F4-6570-01 5 19473748 19473748 T A CDH18 Missense_Mutation p.N654Y 0.18 deleterious(0) probably_damaging(0.929) TCGA-F4-6570-01 5 19839059 19839059 G - CDH18 Frame_Shift_Del p.L13* 0.24 TCGA-F4-6570-01 5 23527866 23527866 G A PRDM9 Missense_Mutation p.C890Y 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-F4-6570-01 5 24488084 24488085 - T CDH10 Frame_Shift_Ins p.L686Afs*22 0.23 TCGA-F4-6570-01 5 24509911 24509911 G A CDH10 Silent p.S340S 0.12 TCGA-F4-6570-01 5 306799 306799 C T PDCD6 Silent p.N97N 0.30 TCGA-F4-6570-01 5 33936946 33936946 C T RXFP3 Missense_Mutation p.A34V 0.31 tolerated_low_confidence(0.4) benign(0.002) TCGA-F4-6570-01 5 35795845 35795845 C A SPEF2 Missense_Mutation p.P1593Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 5 3600155 3600155 A G IRX1 Missense_Mutation p.T365A 0.30 tolerated(0.07) possibly_damaging(0.899) TCGA-F4-6570-01 5 3600256 3600256 C T IRX1 Silent p.H398H 0.21 TCGA-F4-6570-01 5 37017200 37017200 G A NIPBL Missense_Mutation p.R1619Q 0.12 deleterious(0.02) possibly_damaging(0.865) TCGA-F4-6570-01 5 43446500 43446500 G A C5orf28 Nonsense_Mutation p.R158* 0.31 TCGA-F4-6570-01 5 465951 465951 C T EXOC3 Missense_Mutation p.P686L 0.10 deleterious(0) probably_damaging(0.995) TCGA-F4-6570-01 5 52096303 52096303 C T PELO Silent p.D25D 0.41 TCGA-F4-6570-01 5 52368978 52368978 C T ITGA2 Silent p.N820N 0.31 TCGA-F4-6570-01 5 53815138 53815138 C T SNX18 Silent p.F452F 0.28 TCGA-F4-6570-01 5 53815270 53815270 C T SNX18 Silent p.T496T 0.13 TCGA-F4-6570-01 5 54721085 54721085 C T PPAP2A Silent p.L269L 0.28 TCGA-F4-6570-01 5 56778129 56778129 C T ACTBL2 Missense_Mutation p.A136T 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.857) TCGA-F4-6570-01 5 66430427 66430427 C T MAST4 Missense_Mutation p.A768V 0.41 probably_damaging(0.983) TCGA-F4-6570-01 5 68467104 68467104 C G CCNB1 Missense_Mutation p.T124S 0.25 tolerated(0.72) benign(0.005) TCGA-F4-6570-01 5 74137498 74137498 C T FAM169A Missense_Mutation p.A2T 0.18 deleterious(0.04) possibly_damaging(0.511) TCGA-F4-6570-01 5 74325783 74325783 G A GCNT4 Missense_Mutation p.S27F 0.28 tolerated(0.28) benign(0.408) TCGA-F4-6570-01 5 75884778 75884778 T C IQGAP2 Missense_Mutation p.L169S 0.31 deleterious(0) possibly_damaging(0.558) TCGA-F4-6570-01 5 75888687 75888688 AG - IQGAP2 Frame_Shift_Del p.D283Cfs*3 0.29 TCGA-F4-6570-01 5 7724694 7724694 A C ADCY2 Silent p.S580S 0.17 TCGA-F4-6570-01 5 78411657 78411657 A T BHMT Missense_Mutation p.E34V 0.23 deleterious(0) probably_damaging(0.986) TCGA-F4-6570-01 5 78919115 78919115 C T PAPD4 Missense_Mutation p.R90W 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-F4-6570-01 5 7895967 7895967 T C MTRR Splice_Site p.X586_splice 0.23 TCGA-F4-6570-01 5 79379068 79379068 T A THBS4 3'UTR 0.23 TCGA-F4-6570-01 5 80608439 80608439 G A ZCCHC9 Silent p.P258P 0.11 TCGA-F4-6570-01 5 86627205 86627205 C T RASA1 Missense_Mutation p.R194C 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-F4-6570-01 5 89979788 89979788 C T GPR98 Missense_Mutation p.T2017I 0.36 possibly_damaging(0.619) TCGA-F4-6570-01 6 100006193 100006193 A T CCNC Intron 0.40 TCGA-F4-6570-01 6 106536113 106536113 A G PRDM1 Missense_Mutation p.Q27R 0.23 tolerated_low_confidence(0.61) benign(0.001) TCGA-F4-6570-01 6 10796274 10796274 G A MAK Missense_Mutation p.P367L 0.08 tolerated(0.12) benign(0.001) TCGA-F4-6570-01 6 10887329 10887329 C T SYCP2L 5'UTR 0.18 TCGA-F4-6570-01 6 109415077 109415077 G A SESN1 Missense_Mutation p.A67V 0.22 tolerated(0.51) benign(0.005) TCGA-F4-6570-01 6 11104970 11104970 A C ERVFRD-1 Missense_Mutation p.F192V 0.32 tolerated(0.12) benign(0.013) TCGA-F4-6570-01 6 111701188 111701188 T - REV3L Frame_Shift_Del p.K484Rfs*33 0.27 TCGA-F4-6570-01 6 112405395 112405395 T C TUBE1 Silent p.A69A 0.32 TCGA-F4-6570-01 6 112462023 112462024 AG - LAMA4 Frame_Shift_Del p.L972Afs*6 0.13 TCGA-F4-6570-01 6 116944064 116944064 G A RSPH4A Missense_Mutation p.E274K 0.26 tolerated(0.19) benign(0.134) TCGA-F4-6570-01 6 117589376 117589376 C T VGLL2 Missense_Mutation p.A38V 0.26 deleterious(0.01) possibly_damaging(0.677) TCGA-F4-6570-01 6 117681090 117681090 G A ROS1 Missense_Mutation p.T1177M 0.41 tolerated(0.1) benign(0.004) TCGA-F4-6570-01 6 117869175 117869175 C A DCBLD1 Intron 0.50 TCGA-F4-6570-01 6 117890738 117890738 C A GOPC Missense_Mutation p.Q358H 0.13 deleterious(0.02) probably_damaging(0.968) TCGA-F4-6570-01 6 119670059 119670059 C T MAN1A1 Missense_Mutation p.A58T 0.16 tolerated(0.1) probably_damaging(0.999) TCGA-F4-6570-01 6 123850437 123850437 T G TRDN Intron 0.21 TCGA-F4-6570-01 6 127765378 127765378 G T KIAA0408 Missense_Mutation p.A654D 0.13 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 6 128134518 128134518 G A THEMIS Missense_Mutation p.A423V 0.21 tolerated(0.26) benign(0.009) TCGA-F4-6570-01 6 129826416 129826417 - A LAMA2 Frame_Shift_Ins p.A2876Sfs*30 0.28 TCGA-F4-6570-01 6 131897828 131897829 - TACAGTATTGA ARG1 Frame_Shift_Ins p.R32Ifs*4 0.32 TCGA-F4-6570-01 6 131958551 131958551 G A ENPP3 Silent p.T9T 0.17 TCGA-F4-6570-01 6 132207800 132207800 G A ENPP1 Missense_Mutation p.C848Y 0.29 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 6 132860183 132860183 G C TAAR9 Missense_Mutation p.R252T 0.24 deleterious(0.02) possibly_damaging(0.792) TCGA-F4-6570-01 6 132909796 132909796 C T TAAR5 3'UTR 0.15 TCGA-F4-6570-01 6 135518338 135518338 A - MYB Frame_Shift_Del p.K483Nfs*8 0.27 TCGA-F4-6570-01 6 138576861 138576861 C - KIAA1244 Frame_Shift_Del p.P355Hfs*11 0.30 TCGA-F4-6570-01 6 138656102 138656102 C T KIAA1244 Missense_Mutation p.A2040V 0.10 tolerated_low_confidence(0.39) benign(0.001) TCGA-F4-6570-01 6 138753657 138753657 C A NHSL1 Missense_Mutation p.A613S 0.17 tolerated(0.08) benign(0.002) TCGA-F4-6570-01 6 142396809 142396809 G A NMBR Silent p.S383S 0.41 TCGA-F4-6570-01 6 146234627 146234627 T C SHPRH Missense_Mutation p.Q1438R 0.25 tolerated(0.35) possibly_damaging(0.588) TCGA-F4-6570-01 6 146755623 146755623 G A GRM1 Silent p.P1092P 0.18 TCGA-F4-6570-01 6 148795286 148795286 C T SASH1 Silent p.S185S 0.33 TCGA-F4-6570-01 6 149911977 149911977 C T GINM1 3'UTR 0.21 TCGA-F4-6570-01 6 149997822 149997822 G T LATS1 Missense_Mutation p.P882H 0.26 tolerated(0.44) possibly_damaging(0.719) TCGA-F4-6570-01 6 151687930 151687930 C T ZBTB2 Missense_Mutation p.D91N 0.21 tolerated(0.12) probably_damaging(0.996) TCGA-F4-6570-01 6 152443751 152443751 G A SYNE1 Silent p.R8738R 0.25 TCGA-F4-6570-01 6 152542066 152542066 G C SYNE1 Missense_Mutation p.Q7258E 0.24 benign(0.01) TCGA-F4-6570-01 6 153078238 153078238 G A VIP Missense_Mutation p.G159R 0.44 deleterious(0.03) possibly_damaging(0.844) TCGA-F4-6570-01 6 153296531 153296531 G A FBXO5 Missense_Mutation p.T110I 0.20 tolerated(0.08) possibly_damaging(0.723) TCGA-F4-6570-01 6 154429258 154429258 G A OPRM1 Intron 0.12 TCGA-F4-6570-01 6 158925001 158925001 C T TULP4 Missense_Mutation p.P1436S 0.41 deleterious_low_confidence(0.01) benign(0.138) TCGA-F4-6570-01 6 159660766 159660766 G A FNDC1 Silent p.P1466P 0.39 TCGA-F4-6570-01 6 160485488 160485488 G - IGF2R Frame_Shift_Del p.D1317Tfs*27 0.36 TCGA-F4-6570-01 6 160858117 160858117 G A SLC22A3 Missense_Mutation p.V388M 0.27 deleterious(0.01) possibly_damaging(0.714) TCGA-F4-6570-01 6 160864692 160864692 G C SLC22A3 Silent p.L476L 0.26 TCGA-F4-6570-01 6 161533727 161533727 G A MAP3K4 Missense_Mutation p.R1516H 0.38 deleterious(0.01) probably_damaging(0.954) TCGA-F4-6570-01 6 165703539 165703539 T A C6orf118 Missense_Mutation p.I380L 0.22 tolerated(0.31) benign(0.066) TCGA-F4-6570-01 6 166923806 166923806 A G RPS6KA2 Missense_Mutation p.L121S 0.28 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 6 167728729 167728729 G A UNC93A Missense_Mutation p.R388H 0.24 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 6 168315864 168315864 G A MLLT4 Silent p.T765T 0.13 TCGA-F4-6570-01 6 168351927 168351927 G A MLLT4 Missense_Mutation p.R1291Q 0.17 tolerated_low_confidence(0.21) benign(0.022) TCGA-F4-6570-01 6 170156841 170156841 C T ERMARD Silent p.C148C 0.35 TCGA-F4-6570-01 6 18197396 18197396 G T KDM1B Missense_Mutation p.G228C 0.32 deleterious_low_confidence(0) unknown(0) TCGA-F4-6570-01 6 20152902 20152902 C T MBOAT1 Silent p.A66A 0.36 TCGA-F4-6570-01 6 20481455 20481455 A - E2F3 Frame_Shift_Del p.T177Rfs*18 0.25 TCGA-F4-6570-01 6 21598293 21598293 T - SOX4 3'UTR 0.36 TCGA-F4-6570-01 6 24423827 24423827 A - MRS2 Frame_Shift_Del p.K414Rfs*11 0.11 TCGA-F4-6570-01 6 24437459 24437459 G A GPLD1 Silent p.R693R 0.22 TCGA-F4-6570-01 6 25855396 25855396 A G SLC17A3 Missense_Mutation p.W230R 0.27 deleterious(0.02) probably_damaging(0.986) TCGA-F4-6570-01 6 26056089 26056089 C T HIST1H1C Missense_Mutation p.A190T 0.14 deleterious(0) unknown(0) TCGA-F4-6570-01 6 26370632 26370632 C - BTN3A2 Frame_Shift_Del p.Q174Nfs*31 0.18 TCGA-F4-6570-01 6 26638534 26638534 C A ZNF322 Missense_Mutation p.S83I 0.22 deleterious(0.01) benign(0.097) TCGA-F4-6570-01 6 27279810 27279810 G A POM121L2 Missense_Mutation p.A47V 0.36 tolerated(0.18) possibly_damaging(0.633) TCGA-F4-6570-01 6 27368366 27368366 G A ZNF391 Missense_Mutation p.A73T 0.33 tolerated(1) benign(0) TCGA-F4-6570-01 6 27799247 27799247 C T HIST1H4K Missense_Mutation p.R20H 0.26 tolerated(0.12) unknown(0) TCGA-F4-6570-01 6 28135041 28135041 T C ZNF192P1 RNA 0.12 TCGA-F4-6570-01 6 29274638 29274638 T C OR14J1 Missense_Mutation p.Y58H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6570-01 6 29911965 29911965 C A HLA-A Missense_Mutation p.A229D 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-F4-6570-01 6 30122103 30122103 C - TRIM10 Frame_Shift_Del p.R364Dfs*6 0.16 TCGA-F4-6570-01 6 30570103 30570103 C T PPP1R10 Missense_Mutation p.G775S 0.39 tolerated_low_confidence(0.4) unknown(0) TCGA-F4-6570-01 6 30916347 30916347 C A DPCR1 Missense_Mutation p.Q36K 0.32 deleterious(0.02) possibly_damaging(0.679) TCGA-F4-6570-01 6 3123914 3123914 T C BPHL Missense_Mutation p.V44A 0.10 tolerated(0.1) benign(0.022) TCGA-F4-6570-01 6 31595678 31595678 G - PRRC2A Frame_Shift_Del p.R477Afs*94 0.31 TCGA-F4-6570-01 6 31675438 31675438 C A LY6G6F Missense_Mutation p.L86M 0.33 deleterious(0.01) probably_damaging(0.961) TCGA-F4-6570-01 6 31744357 31744357 G - VWA7 Frame_Shift_Del p.P67Qfs*38 0.39 TCGA-F4-6570-01 6 31765429 31765430 - A LSM2 3'UTR 0.31 TCGA-F4-6570-01 6 31779035 31779035 G C HSPA1L Missense_Mutation p.L239V 0.29 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-F4-6570-01 6 31779459 31779459 A G HSPA1L Silent p.I97I 0.31 TCGA-F4-6570-01 6 31937950 31937950 A G DXO Missense_Mutation p.C327R 0.11 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 6 32024609 32024609 C - TNXB Frame_Shift_Del p.E2633Sfs*2 0.09 TCGA-F4-6570-01 6 32035684 32035684 C - TNXB Frame_Shift_Del p.E2100Sfs*2 0.21 TCGA-F4-6570-01 6 32166916 32166916 G - NOTCH4 Frame_Shift_Del p.P1441Lfs*17 0.28 TCGA-F4-6570-01 6 33154551 33154551 G T COL11A2 Silent p.A217A 0.32 TCGA-F4-6570-01 6 33163160 33163160 G A RXRB Missense_Mutation p.A447V 0.29 deleterious(0.01) probably_damaging(0.932) TCGA-F4-6570-01 6 33173932 33173932 G T HSD17B8 Nonsense_Mutation p.G225* 0.35 TCGA-F4-6570-01 6 33283467 33283467 G - ZBTB22 Frame_Shift_Del p.S410Pfs*45 0.15 TCGA-F4-6570-01 6 33652649 33652649 A - ITPR3 Frame_Shift_Del p.N1746Tfs*30 0.27 TCGA-F4-6570-01 6 34101143 34101143 C T GRM4 Missense_Mutation p.R44H 0.12 deleterious(0.04) probably_damaging(0.996) TCGA-F4-6570-01 6 34213379 34213379 A G HMGA1 3'UTR 0.18 TCGA-F4-6570-01 6 35765035 35765035 C T CLPS Missense_Mutation p.A11T 0.17 tolerated(0.74) benign(0.001) TCGA-F4-6570-01 6 37612298 37612298 G - MDGA1 Frame_Shift_Del p.T793Pfs*3 0.38 TCGA-F4-6570-01 6 37626036 37626036 G A MDGA1 Missense_Mutation p.R123C 0.54 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 6 3850444 3850444 G A FAM50B Silent p.A133A 0.40 TCGA-F4-6570-01 6 38813531 38813531 G A DNAH8 Missense_Mutation p.G1459E 0.38 possibly_damaging(0.697) TCGA-F4-6570-01 6 39158811 39158811 C A KCNK5 Missense_Mutation p.G452V 0.28 tolerated_low_confidence(0.27) benign(0.004) TCGA-F4-6570-01 6 39272281 39272281 C - KCNK17 Frame_Shift_Del p.G168Afs*61 0.38 TCGA-F4-6570-01 6 39851674 39851674 C T DAAM2 Intron 0.37 TCGA-F4-6570-01 6 41889330 41889330 G - BYSL Frame_Shift_Del p.G12Vfs*43 0.48 TCGA-F4-6570-01 6 42179598 42179598 C A MRPS10 Missense_Mutation p.G82C 0.26 deleterious(0.01) benign(0.405) TCGA-F4-6570-01 6 42934321 42934321 A G PEX6 Missense_Mutation p.F679S 0.21 deleterious(0) possibly_damaging(0.797) TCGA-F4-6570-01 6 42957352 42957352 C - PPP2R5D Frame_Shift_Del p.K13Rfs*94 0.40 TCGA-F4-6570-01 6 42974288 42974288 C - PPP2R5D Frame_Shift_Del p.T67Rfs*40 0.25 TCGA-F4-6570-01 6 43146057 43146057 G A SRF Silent p.T396T 0.19 TCGA-F4-6570-01 6 43191033 43191033 C A CUL9 Silent p.A2394A 0.16 TCGA-F4-6570-01 6 43275614 43275614 G A CRIP3 Silent p.C53C 0.15 TCGA-F4-6570-01 6 43410858 43410858 G A ABCC10 Missense_Mutation p.A793T 0.28 tolerated(0.22) benign(0.022) TCGA-F4-6570-01 6 43418413 43418413 G - DLK2 Frame_Shift_Del p.P339Lfs*96 0.33 TCGA-F4-6570-01 6 44148711 44148711 C T CAPN11 Missense_Mutation p.R616C 0.38 deleterious(0) probably_damaging(0.964) TCGA-F4-6570-01 6 45390355 45390355 C - RUNX2 Frame_Shift_Del p.S31Pfs*9 0.34 TCGA-F4-6570-01 6 45917076 45917076 C T CLIC5 Silent p.P231P 0.29 TCGA-F4-6570-01 6 46656871 46656871 C T TDRD6 Missense_Mutation p.R336W 0.11 deleterious(0) probably_damaging(0.994) TCGA-F4-6570-01 6 46677134 46677134 T - PLA2G7 Frame_Shift_Del p.I267* 0.14 TCGA-F4-6570-01 6 47678561 47678561 A - GPR115 Frame_Shift_Del p.K82Sfs*29 0.09 TCGA-F4-6570-01 6 4937830 4937830 C T CDYL Missense_Mutation p.T327M 0.34 deleterious(0) probably_damaging(0.97) TCGA-F4-6570-01 6 4943956 4943956 C T CDYL Missense_Mutation p.T433I 0.11 deleterious(0) probably_damaging(0.987) TCGA-F4-6570-01 6 51890015 51890015 A - PKHD1 Frame_Shift_Del p.F1531Lfs*61 0.31 TCGA-F4-6570-01 6 55039274 55039274 G A HCRTR2 5'UTR 0.33 TCGA-F4-6570-01 6 56335022 56335022 G A DST Silent p.G4837G 0.19 TCGA-F4-6570-01 6 56362694 56362695 - T DST Frame_Shift_Ins p.T4062Nfs*23 0.12 TCGA-F4-6570-01 6 56918729 56918729 C T KIAA1586 Nonsense_Mutation p.R478* 0.32 TCGA-F4-6570-01 6 57012972 57012972 G T ZNF451 Missense_Mutation p.V697L 0.11 tolerated(0.17) benign(0.012) TCGA-F4-6570-01 6 63990176 63990176 C T LGSN Missense_Mutation p.G427D 0.24 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 6 64499076 64499076 C A EYS Missense_Mutation p.G2485C 0.26 deleterious(0.03) probably_damaging(0.977) TCGA-F4-6570-01 6 656294 656294 C T HUS1B Silent p.V217V 0.33 TCGA-F4-6570-01 6 70385916 70385916 A G LMBRD1 3'UTR 0.36 TCGA-F4-6570-01 6 72678732 72678732 A C RIMS1 Silent p.R71R 0.13 TCGA-F4-6570-01 6 73000525 73000525 T C RIMS1 Missense_Mutation p.V1233A 0.38 tolerated(1) benign(0) TCGA-F4-6570-01 6 74104197 74104197 G A DDX43 5'Flank 0.34 TCGA-F4-6570-01 6 7572198 7572198 G A DSP Missense_Mutation p.R676H 0.38 probably_damaging(0.996) TCGA-F4-6570-01 6 75864144 75864144 T A COL12A1 Missense_Mutation p.I1185F 0.27 benign(0.001) TCGA-F4-6570-01 6 75994399 75994399 G - TMEM30A 5'UTR 0.31 TCGA-F4-6570-01 6 80720532 80720532 T C TTK Silent p.G157G 0.33 TCGA-F4-6570-01 6 82927753 82927753 A G IBTK Silent p.I450I 0.33 TCGA-F4-6570-01 6 83839024 83839024 G A DOPEY1 Missense_Mutation p.R713Q 0.25 tolerated(0.38) benign(0.014) TCGA-F4-6570-01 6 83855295 83855295 C T DOPEY1 Missense_Mutation p.S1865L 0.32 deleterious(0) possibly_damaging(0.493) TCGA-F4-6570-01 6 85470073 85470073 G A TBX18 Missense_Mutation p.R167C 0.23 deleterious(0) probably_damaging(0.998) TCGA-F4-6570-01 6 88346138 88346138 A G ORC3 Missense_Mutation p.Y439C 0.41 deleterious(0) probably_damaging(0.979) TCGA-F4-6570-01 6 90576709 90576709 A - CASP8AP2 RNA 0.29 TCGA-F4-6570-01 6 90578732 90578732 C T CASP8AP2 RNA 0.11 TCGA-F4-6570-01 6 96035253 96035253 A - MANEA Intron 0.35 TCGA-F4-6570-01 6 96661836 96661836 C - FUT9 3'UTR 0.14 TCGA-F4-6570-01 7 100189522 100189522 G T FBXO24 Missense_Mutation p.K223N 0.09 deleterious_low_confidence(0.01) benign(0.403) TCGA-F4-6570-01 7 100334606 100334606 G A ZAN Missense_Mutation p.R143H 0.23 benign(0.031) TCGA-F4-6570-01 7 100675383 100675383 C T MUC17 Missense_Mutation p.A229V 0.08 benign(0.255) TCGA-F4-6570-01 7 100802409 100802409 G A AP1S1 Missense_Mutation p.G121R 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-F4-6570-01 7 101187316 101187316 C - COL26A1 Frame_Shift_Del p.S218Lfs*131 0.21 TCGA-F4-6570-01 7 101870949 101870949 G A CUX1 Missense_Mutation p.G1156S 0.42 deleterious(0) unknown(0) TCGA-F4-6570-01 7 102097776 102097776 A G ALKBH4 3'UTR 0.33 TCGA-F4-6570-01 7 103015023 103015023 G A SLC26A5 Silent p.D686D 0.33 TCGA-F4-6570-01 7 103293015 103293015 C T RELN Silent p.T582T 0.25 TCGA-F4-6570-01 7 106964889 106964889 T C COG5 Silent p.T399T 0.26 TCGA-F4-6570-01 7 107398857 107398857 A G CBLL1 Missense_Mutation p.H237R 0.11 tolerated(0.16) benign(0.061) TCGA-F4-6570-01 7 107564451 107564451 C T LAMB1 Missense_Mutation p.R1769H 0.36 deleterious(0.01) probably_damaging(0.97) TCGA-F4-6570-01 7 110763957 110763957 C T LRRN3 Missense_Mutation p.R377C 0.29 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 7 114562975 114562975 C A MDFIC Intron 0.39 TCGA-F4-6570-01 7 117067425 117067425 G A ASZ1 Silent p.L30L 0.40 TCGA-F4-6570-01 7 123594013 123594013 A T SPAM1 Missense_Mutation p.D130V 0.25 deleterious(0) possibly_damaging(0.801) TCGA-F4-6570-01 7 12730188 12730188 A G ARL4A 3'UTR 0.19 TCGA-F4-6570-01 7 128450362 128450362 T C CCDC136 Missense_Mutation p.V657A 0.38 tolerated(0.06) benign(0.159) TCGA-F4-6570-01 7 128480730 128480730 T C FLNC Splice_Site p.X559_splice 0.15 TCGA-F4-6570-01 7 128480971 128480971 G T FLNC Missense_Mutation p.G587V 0.10 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 7 128482306 128482306 G A FLNC Missense_Mutation p.D715N 0.09 tolerated(0.16) benign(0.03) TCGA-F4-6570-01 7 128494921 128494921 C T FLNC Missense_Mutation p.R2364C 0.26 tolerated(0.18) probably_damaging(1) TCGA-F4-6570-01 7 129986379 129986379 G C CPA5 Missense_Mutation p.R18T 0.15 tolerated(0.08) benign(0.034) TCGA-F4-6570-01 7 131147993 131147994 AC - MKLN1 Frame_Shift_Del p.Q516Efs*5 0.10 TCGA-F4-6570-01 7 131825373 131825373 T A PLXNA4 Missense_Mutation p.K1808M 0.21 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 7 131872227 131872227 T G PLXNA4 Intron 0.31 TCGA-F4-6570-01 7 134718929 134718929 G A AGBL3 Missense_Mutation p.R196H 0.10 deleterious(0.04) probably_damaging(0.996) TCGA-F4-6570-01 7 138602776 138602776 C T KIAA1549 Silent p.A532A 0.27 TCGA-F4-6570-01 7 138604075 138604075 G A KIAA1549 Silent p.P99P 0.32 TCGA-F4-6570-01 7 138768749 138768749 C T ZC3HAV1 Silent p.R158R 0.29 TCGA-F4-6570-01 7 138845819 138845819 T C TTC26 Intron 0.42 TCGA-F4-6570-01 7 138954259 138954259 T C UBN2 Missense_Mutation p.L529P 0.12 deleterious(0) probably_damaging(0.98) TCGA-F4-6570-01 7 139655321 139655321 C T TBXAS1 Silent p.S248S 0.25 TCGA-F4-6570-01 7 14028338 14028339 - A ETV1 Intron 0.14 TCGA-F4-6570-01 7 140394680 140394680 G A ADCK2 3'UTR 0.26 TCGA-F4-6570-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.24 deleterious(0) probably_damaging(0.967) TCGA-F4-6570-01 7 141366207 141366207 A G KIAA1147 Missense_Mutation p.C234R 0.12 deleterious(0.01) benign(0.349) TCGA-F4-6570-01 7 141750534 141750534 A C MGAM Missense_Mutation p.K892T 0.25 tolerated(0.71) benign(0.001) TCGA-F4-6570-01 7 141765186 141765186 A G MGAM Silent p.T1512T 0.25 TCGA-F4-6570-01 7 142630460 142630460 G T TRPV5 Missense_Mutation p.L33M 0.44 tolerated(0.09) benign(0.059) TCGA-F4-6570-01 7 144101700 144101700 G A NOBOX Silent p.S53S 0.09 TCGA-F4-6570-01 7 146829425 146829425 A C CNTNAP2 Missense_Mutation p.N391T 0.28 tolerated(0.26) benign(0.002) TCGA-F4-6570-01 7 147675054 147675054 G A CNTNAP2 Missense_Mutation p.V786I 0.30 tolerated(0.64) benign(0.062) TCGA-F4-6570-01 7 148454196 148454196 G A CUL1 Missense_Mutation p.R146H 0.31 deleterious(0.02) benign(0.035) TCGA-F4-6570-01 7 148876063 148876064 GA - ZNF398 Frame_Shift_Del p.E367Afs*10 0.39 TCGA-F4-6570-01 7 149500630 149500630 C T SSPO RNA 0.38 TCGA-F4-6570-01 7 150085513 150085513 G A ZNF775 5'UTR 0.14 TCGA-F4-6570-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.35 TCGA-F4-6570-01 7 150704193 150704193 C T NOS3 Silent p.F647F 0.09 TCGA-F4-6570-01 7 150718276 150718276 G - ATG9B Frame_Shift_Del p.P321Rfs*4 0.12 TCGA-F4-6570-01 7 150725542 150725542 G A ABCB8 5'UTR 0.31 TCGA-F4-6570-01 7 151046320 151046320 A - NUB1 Frame_Shift_Del p.D120Ifs*17 0.14 TCGA-F4-6570-01 7 152345769 152345769 T - XRCC2 Frame_Shift_Del p.K267Nfs*30 0.19 TCGA-F4-6570-01 7 15430349 15430350 - T AGMO Frame_Shift_Ins p.V257Sfs*10 0.27 TCGA-F4-6570-01 7 156752697 156752698 - A NOM1 Frame_Shift_Ins p.L490Tfs*11 0.22 TCGA-F4-6570-01 7 158536332 158536332 A G ESYT2 Missense_Mutation p.L588P 0.31 deleterious(0) probably_damaging(0.94) TCGA-F4-6570-01 7 1586811 1586811 G A TMEM184A Missense_Mutation p.P340L 0.32 tolerated(0.57) benign(0.002) TCGA-F4-6570-01 7 16737717 16737718 AG - BZW2 Frame_Shift_Del p.E339Afs*30 0.32 TCGA-F4-6570-01 7 18625094 18625094 G A HDAC9 Silent p.Q71Q 0.20 TCGA-F4-6570-01 7 2418788 2418788 G A EIF3B Missense_Mutation p.R751H 0.24 deleterious(0.04) benign(0.005) TCGA-F4-6570-01 7 26576544 26576544 C - KIAA0087 Frame_Shift_Del p.G82Dfs*6 0.08 TCGA-F4-6570-01 7 28858945 28858945 G A CREB5 3'UTR 0.29 TCGA-F4-6570-01 7 30185905 30185906 - T MTURN Frame_Shift_Ins p.R94Qfs*11 0.36 TCGA-F4-6570-01 7 32909137 32909137 C T KBTBD2 Silent p.R564R 0.30 TCGA-F4-6570-01 7 36373744 36373744 T A KIAA0895 Missense_Mutation p.N343Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-F4-6570-01 7 36616236 36616236 C T AOAH Missense_Mutation p.R322H 0.22 tolerated(0.07) benign(0.179) TCGA-F4-6570-01 7 4002400 4002400 G A SDK1 Missense_Mutation p.R449H 0.34 tolerated(0.22) benign(0.005) TCGA-F4-6570-01 7 40132766 40132766 G A CDK13 Silent p.R1206R 0.19 TCGA-F4-6570-01 7 4189019 4189019 C T SDK1 Nonsense_Mutation p.R1517* 0.17 TCGA-F4-6570-01 7 42064874 42064874 G A GLI3 Missense_Mutation p.R449W 0.35 deleterious(0.04) possibly_damaging(0.884) TCGA-F4-6570-01 7 42964325 42964325 G T PSMA2 Missense_Mutation p.A108D 0.18 tolerated(0.53) benign(0.009) TCGA-F4-6570-01 7 43477604 43477604 A G HECW1 Silent p.Q268Q 0.28 TCGA-F4-6570-01 7 43916395 43916395 G A URGCP Silent p.A889A 0.27 TCGA-F4-6570-01 7 44092501 44092501 C T DBNL Silent p.A96A 0.31 TCGA-F4-6570-01 7 44118408 44118408 C T POLM Silent p.E215E 0.29 TCGA-F4-6570-01 7 45742989 45742989 A G ADCY1 Silent p.R823R 0.19 TCGA-F4-6570-01 7 4780473 4780473 A G FOXK1 Missense_Mutation p.T189A 0.31 deleterious(0.03) benign(0.326) TCGA-F4-6570-01 7 47840338 47840338 C T PKD1L1 Missense_Mutation p.C2701Y 0.25 tolerated(0.25) benign(0) TCGA-F4-6570-01 7 47942032 47942032 C T PKD1L1 Missense_Mutation p.V670M 0.33 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 7 48075805 48075805 C T C7orf57 Intron 0.27 TCGA-F4-6570-01 7 4827794 4827794 G A AP5Z1 Silent p.P488P 0.30 TCGA-F4-6570-01 7 48319417 48319417 T C ABCA13 Missense_Mutation p.F2876L 0.24 benign(0.006) TCGA-F4-6570-01 7 4917780 4917780 G T RADIL 5'UTR 0.19 TCGA-F4-6570-01 7 51095751 51095751 G A COBL Silent p.R1014R 0.21 TCGA-F4-6570-01 7 51096682 51096682 C T COBL Missense_Mutation p.G704D 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 7 5336714 5336714 G A SLC29A4 Missense_Mutation p.R256H 0.30 tolerated(0.12) benign(0.051) TCGA-F4-6570-01 7 5336823 5336823 C T SLC29A4 Silent p.V292V 0.46 TCGA-F4-6570-01 7 5391576 5391576 G T TNRC18 Missense_Mutation p.L1782M 0.15 possibly_damaging(0.513) TCGA-F4-6570-01 7 54617755 54617755 G A VSTM2A Missense_Mutation p.V176I 0.21 tolerated(0.65) benign(0.002) TCGA-F4-6570-01 7 550530 550530 G A PDGFA Silent p.C123C 0.13 TCGA-F4-6570-01 7 5541275 5541275 C T FBXL18 Missense_Mutation p.E209K 0.18 deleterious(0.01) possibly_damaging(0.836) TCGA-F4-6570-01 7 56155317 56155317 C T PHKG1 Missense_Mutation p.R79H 0.17 tolerated(0.07) benign(0.019) TCGA-F4-6570-01 7 5680795 5680795 G T RNF216 Missense_Mutation p.T791N 0.12 deleterious(0.03) probably_damaging(0.99) TCGA-F4-6570-01 7 63538219 63538219 C A ZNF727 Silent p.A264A 0.11 TCGA-F4-6570-01 7 64169441 64169441 G A ZNF107 3'UTR 0.30 TCGA-F4-6570-01 7 65554149 65554149 G A ASL Missense_Mutation p.R302H 0.32 deleterious(0) benign(0.208) TCGA-F4-6570-01 7 72413921 72413921 G T POM121 Missense_Mutation p.G865V 0.17 deleterious(0) possibly_damaging(0.895) TCGA-F4-6570-01 7 72892706 72892706 G T BAZ1B Missense_Mutation p.P362H 0.31 deleterious(0.01) possibly_damaging(0.717) TCGA-F4-6570-01 7 73254805 73254805 G - WBSCR27 Frame_Shift_Del p.G110Afs*27 0.21 TCGA-F4-6570-01 7 75617123 75617123 C T POR 3'Flank 0.16 TCGA-F4-6570-01 7 80433540 80433540 A G SEMA3C Missense_Mutation p.V228A 0.35 tolerated(0.24) benign(0.16) TCGA-F4-6570-01 7 82785218 82785218 T - PCLO Frame_Shift_Del p.I247Lfs*42 0.16 TCGA-F4-6570-01 7 86416246 86416246 G A GRM3 Missense_Mutation p.D380N 0.30 tolerated(0.31) benign(0.002) TCGA-F4-6570-01 7 87031411 87031411 T G ABCB4 3'UTR 0.25 TCGA-F4-6570-01 7 87760743 87760744 - T ADAM22 Frame_Shift_Ins p.S331Ffs*6 0.23 TCGA-F4-6570-01 7 90044510 90044511 - T CLDN12 3'UTR 0.22 TCGA-F4-6570-01 7 91623953 91623953 G A AKAP9 Missense_Mutation p.A199T 0.09 probably_damaging(0.999) TCGA-F4-6570-01 7 92734833 92734833 G A SAMD9 Missense_Mutation p.P193L 0.33 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 7 94293714 94293714 G A PEG10 Silent p.T282T 0.25 TCGA-F4-6570-01 7 95838171 95838171 C T SLC25A13 Silent p.A149A 0.15 TCGA-F4-6570-01 7 97933623 97933623 G - BAIAP2L1 Frame_Shift_Del p.P436Hfs*60 0.41 TCGA-F4-6570-01 7 97939854 97939854 G - BAIAP2L1 Frame_Shift_Del p.A287Lfs*11 0.27 TCGA-F4-6570-01 7 98609104 98609104 G A TRRAP Silent p.P3747P 0.34 TCGA-F4-6570-01 7 99031006 99031006 C T ATP5J2-PTCD1 Missense_Mutation p.M212I 0.13 deleterious(0.01) possibly_damaging(0.835) TCGA-F4-6570-01 7 99158301 99158301 A G ZNF655 Missense_Mutation p.E40G 0.10 deleterious(0.01) benign(0.011) TCGA-F4-6570-01 7 99227411 99227411 G A ZSCAN25 Missense_Mutation p.S468N 0.38 tolerated(0.22) benign(0.337) TCGA-F4-6570-01 7 99668605 99668605 T C ZNF3 3'UTR 0.28 TCGA-F4-6570-01 7 99668870 99668870 G A ZNF3 Missense_Mutation p.R413C 0.26 deleterious(0) probably_damaging(0.965) TCGA-F4-6570-01 8 100454787 100454787 T C VPS13B Silent p.I1123I 0.25 TCGA-F4-6570-01 8 10102688 10102688 G A MSRA Missense_Mutation p.A96T 0.10 deleterious(0.03) possibly_damaging(0.794) TCGA-F4-6570-01 8 104337269 104337269 G T FZD6 Missense_Mutation p.G312V 0.38 tolerated(0.27) probably_damaging(1) TCGA-F4-6570-01 8 104898169 104898169 T G RIMS2 Missense_Mutation p.L448V 0.36 tolerated_low_confidence(0.12) benign(0.007) TCGA-F4-6570-01 8 10755776 10755776 C A XKR6 Missense_Mutation p.G538W 0.19 deleterious(0.01) probably_damaging(0.924) TCGA-F4-6570-01 8 109001468 109001468 A C RSPO2 Missense_Mutation p.S33R 0.20 tolerated(0.08) possibly_damaging(0.522) TCGA-F4-6570-01 8 110420436 110420436 G T PKHD1L1 Splice_Site p.X657_splice 0.34 TCGA-F4-6570-01 8 11058360 11058360 C T XKR6 Silent p.G163G 0.28 TCGA-F4-6570-01 8 110984487 110984487 C A KCNV1 Nonsense_Mutation p.G331* 0.26 TCGA-F4-6570-01 8 116426519 116426519 T - TRPS1 Frame_Shift_Del p.N1206Mfs*5 0.21 TCGA-F4-6570-01 8 117784033 117784033 A T UTP23 Missense_Mutation p.R234S 0.32 tolerated_low_confidence(0.13) probably_damaging(0.977) TCGA-F4-6570-01 8 12044098 12044098 C T FAM86B1 Missense_Mutation p.G135S 0.20 deleterious(0.04) probably_damaging(0.952) TCGA-F4-6570-01 8 121290351 121290351 T C COL14A1 Missense_Mutation p.V1072A 0.09 deleterious(0) probably_damaging(0.997) TCGA-F4-6570-01 8 124153041 124153041 G A TBC1D31 Missense_Mutation p.R847Q 0.40 tolerated(0.08) benign(0.035) TCGA-F4-6570-01 8 124206355 124206355 C T FAM83A Missense_Mutation p.S247L 0.22 tolerated(0.42) possibly_damaging(0.67) TCGA-F4-6570-01 8 125132017 125132017 G A FER1L6 Missense_Mutation p.V1854I 0.40 tolerated(0.47) benign(0.053) TCGA-F4-6570-01 8 125339647 125339647 G A TMEM65 Missense_Mutation p.A122V 0.08 tolerated(0.05) probably_damaging(0.983) TCGA-F4-6570-01 8 125464742 125464742 C T TRMT12 3'UTR 0.35 TCGA-F4-6570-01 8 125568560 125568560 C A MTSS1 Silent p.G439G 0.13 TCGA-F4-6570-01 8 128428461 128428462 - C POU5F1B Frame_Shift_Ins p.G120Wfs*69 0.38 TCGA-F4-6570-01 8 12943817 12943817 A G DLC1 Missense_Mutation p.M1483T 0.40 deleterious(0) possibly_damaging(0.76) TCGA-F4-6570-01 8 132968107 132968107 G A EFR3A Missense_Mutation p.R244Q 0.37 deleterious(0) possibly_damaging(0.622) TCGA-F4-6570-01 8 135612914 135612914 A - ZFAT Intron 0.29 TCGA-F4-6570-01 8 139268934 139268934 C T FAM135B Silent p.Q122Q 0.11 TCGA-F4-6570-01 8 13959935 13959935 A G SGCZ Missense_Mutation p.F232L 0.10 tolerated(0.62) benign(0.001) TCGA-F4-6570-01 8 141034090 141034090 A G TRAPPC9 Silent p.H979H 0.18 TCGA-F4-6570-01 8 142441080 142441080 G A PTP4A3 Missense_Mutation p.R153Q 0.19 tolerated(0.1) probably_damaging(0.982) TCGA-F4-6570-01 8 143746364 143746364 C T JRK RNA 0.24 TCGA-F4-6570-01 8 143846067 143846067 C T LYNX1 Missense_Mutation p.V118I 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.523) TCGA-F4-6570-01 8 144734280 144734280 C T ZNF623 3'UTR 0.11 TCGA-F4-6570-01 8 144945119 144945119 A G EPPK1 Missense_Mutation p.F768S 0.21 probably_damaging(0.998) TCGA-F4-6570-01 8 145006626 145006626 A T PLEC Missense_Mutation p.V777E 0.36 unknown(0) TCGA-F4-6570-01 8 145008609 145008609 G A PLEC Missense_Mutation p.A486V 0.40 unknown(0) TCGA-F4-6570-01 8 145012327 145012327 C - PLEC Frame_Shift_Del p.D223Tfs*30 0.47 TCGA-F4-6570-01 8 145024426 145024426 G T PLEC Missense_Mutation p.P150H 0.25 unknown(0) TCGA-F4-6570-01 8 145095112 145095112 G A SPATC1 Missense_Mutation p.A172T 0.20 tolerated(0.18) benign(0.041) TCGA-F4-6570-01 8 145161286 145161286 G A MAF1 Missense_Mutation p.R140Q 0.30 tolerated(0.51) benign(0.067) TCGA-F4-6570-01 8 145579773 145579773 G A FBXL6 Nonsense_Mutation p.R443* 0.23 TCGA-F4-6570-01 8 146156613 146156613 G A ZNF16 Silent p.H520H 0.19 TCGA-F4-6570-01 8 15998514 15998514 A G MSR1 Intron 0.14 TCGA-F4-6570-01 8 17434760 17434760 A G PDGFRL 5'UTR 0.23 TCGA-F4-6570-01 8 1954839 1954839 G A KBTBD11 3'UTR 0.08 TCGA-F4-6570-01 8 19681413 19681413 C - INTS10 Frame_Shift_Del p.P232Lfs*10 0.24 TCGA-F4-6570-01 8 19816860 19816860 G A LPL Missense_Mutation p.V370M 0.35 tolerated(0.22) benign(0.298) TCGA-F4-6570-01 8 22864830 22864830 G T RHOBTB2 Missense_Mutation p.G380C 0.15 tolerated(0.05) possibly_damaging(0.648) TCGA-F4-6570-01 8 25280756 25280756 G A GNRH1 Missense_Mutation p.R31C 0.17 deleterious(0) probably_damaging(0.994) TCGA-F4-6570-01 8 27145186 27145186 C T TRIM35 Missense_Mutation p.A455T 0.37 tolerated(0.25) possibly_damaging(0.623) TCGA-F4-6570-01 8 27320976 27320976 G A CHRNA2 Silent p.I328I 0.45 TCGA-F4-6570-01 8 27767183 27767183 G A SCARA5 Nonsense_Mutation p.R332* 0.18 TCGA-F4-6570-01 8 27887908 27887908 C T NUGGC Missense_Mutation p.D646N 0.48 tolerated(0.52) benign(0.021) TCGA-F4-6570-01 8 28575163 28575163 C T EXTL3 Silent p.T529T 0.18 TCGA-F4-6570-01 8 3063110 3063110 C A CSMD1 Missense_Mutation p.G1634W 0.18 probably_damaging(1) TCGA-F4-6570-01 8 31001132 31001132 A - WRN Frame_Shift_Del p.S1128Vfs*34 0.32 TCGA-F4-6570-01 8 32453382 32453382 A T NRG1 Missense_Mutation p.E46V 0.13 tolerated(0.23) benign(0.363) TCGA-F4-6570-01 8 3263589 3263589 G A CSMD1 Silent p.D742D 0.49 TCGA-F4-6570-01 8 35401924 35401924 A T UNC5D Intron 0.14 TCGA-F4-6570-01 8 37698693 37698693 C T GPR124 Missense_Mutation p.A946V 0.33 tolerated(0.08) possibly_damaging(0.7) TCGA-F4-6570-01 8 37730405 37730406 - T RAB11FIP1 Frame_Shift_Ins p.E639Rfs*27 0.11 TCGA-F4-6570-01 8 38831861 38831861 C T HTRA4 Missense_Mutation p.L27F 0.33 tolerated(0.71) benign(0.032) TCGA-F4-6570-01 8 39871188 39871188 A G IDO2 Missense_Mutation p.H288R 0.24 deleterious(0.01) possibly_damaging(0.897) TCGA-F4-6570-01 8 41557018 41557018 A G ANK1 Missense_Mutation p.V878A 0.14 tolerated(0.87) benign(0) TCGA-F4-6570-01 8 42317485 42317485 C T SLC20A2 Missense_Mutation p.R181Q 0.15 deleterious(0.02) benign(0.068) TCGA-F4-6570-01 8 42863050 42863050 C T HOOK3 Silent p.L572L 0.15 TCGA-F4-6570-01 8 49831291 49831291 C T SNAI2 3'UTR 0.26 TCGA-F4-6570-01 8 53477861 53477861 C A FAM150A 5'UTR 0.26 TCGA-F4-6570-01 8 54684670 54684670 T C ATP6V1H Missense_Mutation p.I310V 0.18 tolerated(1) probably_damaging(0.997) TCGA-F4-6570-01 8 55542130 55542130 G A RP1 Missense_Mutation p.M1896I 0.21 tolerated(0.36) benign(0.002) TCGA-F4-6570-01 8 65291793 65291793 G T MIR124-2 RNA 0.42 TCGA-F4-6570-01 8 67808447 67808447 A C MCMDC2 Missense_Mutation p.K441T 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-F4-6570-01 8 68989641 68989641 C A PREX2 Missense_Mutation p.R527S 0.16 tolerated(0.31) possibly_damaging(0.664) TCGA-F4-6570-01 8 68995622 68995622 G C PREX2 Missense_Mutation p.E676Q 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-F4-6570-01 8 69351686 69351686 T G C8orf34 Intron 0.40 TCGA-F4-6570-01 8 70744360 70744362 CAC - SLCO5A1 In_Frame_Del p.V183del 0.32 TCGA-F4-6570-01 8 72754829 72754829 C T MSC 3'UTR 0.28 TCGA-F4-6570-01 8 72963013 72963013 C T TRPA1 Silent p.K635K 0.25 TCGA-F4-6570-01 8 74706249 74706249 T C UBE2W 3'UTR 0.25 TCGA-F4-6570-01 8 75761387 75761387 G T PI15 Missense_Mutation p.G226W 0.16 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 8 77617680 77617680 G A ZFHX4 Missense_Mutation p.V453I 0.33 benign(0) TCGA-F4-6570-01 8 77619951 77619951 A T ZFHX4 Missense_Mutation p.S921C 0.08 possibly_damaging(0.843) TCGA-F4-6570-01 8 77620005 77620005 A G ZFHX4 Missense_Mutation p.I939V 0.13 benign(0.068) TCGA-F4-6570-01 8 77776198 77776198 C T ZFHX4 Silent p.D3416D 0.40 TCGA-F4-6570-01 8 87386283 87386283 G A WWP1 Missense_Mutation p.A2T 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F4-6570-01 8 87680362 87680362 G A CNGB3 Silent p.S176S 0.27 TCGA-F4-6570-01 8 8875845 8875845 A - ERI1 Frame_Shift_Del p.V210* 0.27 TCGA-F4-6570-01 8 88885491 88885491 G A DCAF4L2 Missense_Mutation p.P237S 0.23 deleterious(0.01) probably_damaging(0.964) TCGA-F4-6570-01 8 91657722 91657722 C T TMEM64 Missense_Mutation p.A138T 0.13 tolerated(0.19) benign(0.283) TCGA-F4-6570-01 8 95178144 95178144 A C CDH17 Missense_Mutation p.F376C 0.09 tolerated(0.08) possibly_damaging(0.704) TCGA-F4-6570-01 8 97256270 97256270 A G MTERFD1 Silent p.I312I 0.08 TCGA-F4-6570-01 9 100417192 100417192 C T NCBP1 Missense_Mutation p.R401C 0.09 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 9 101065558 101065558 A T GABBR2 Missense_Mutation p.S793T 0.17 tolerated(0.56) benign(0.003) TCGA-F4-6570-01 9 1056892 1056892 T G DMRT2 Missense_Mutation p.N435K 0.10 deleterious_low_confidence(0.03) benign(0.059) TCGA-F4-6570-01 9 1056975 1056975 C A DMRT2 Missense_Mutation p.P463H 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.711) TCGA-F4-6570-01 9 106880520 106880520 G T SMC2 Missense_Mutation p.M620I 0.16 deleterious(0.02) possibly_damaging(0.847) TCGA-F4-6570-01 9 107267380 107267380 C T OR13F1 Silent p.A279A 0.10 TCGA-F4-6570-01 9 107594022 107594022 G T ABCA1 Missense_Mutation p.F532L 0.34 tolerated(0.13) benign(0.019) TCGA-F4-6570-01 9 111616922 111616922 G A ACTL7B 3'UTR 0.10 TCGA-F4-6570-01 9 111782563 111782563 A C TMEM245 3'UTR 0.22 TCGA-F4-6570-01 9 114994443 114994443 G A PTBP3 Missense_Mutation p.A353V 0.11 tolerated(0.07) benign(0.011) TCGA-F4-6570-01 9 116153898 116153898 C T ALAD Missense_Mutation p.G57D 0.12 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 9 116854668 116854668 T C KIF12 Silent p.V449V 0.30 TCGA-F4-6570-01 9 119495745 119495745 C T ASTN2 Silent p.P767P 0.11 TCGA-F4-6570-01 9 119903692 119903692 C T ASTN2 Intron 0.08 TCGA-F4-6570-01 9 123935691 123935693 AGA - CNTRL In_Frame_Del p.E2197del 0.35 TCGA-F4-6570-01 9 125551233 125551233 C T OR5C1 Missense_Mutation p.R8W 0.31 tolerated(0.19) benign(0) TCGA-F4-6570-01 9 127572519 127572519 G A OLFML2A Missense_Mutation p.G596D 0.20 deleterious(0) probably_damaging(0.982) TCGA-F4-6570-01 9 128118026 128118026 G A GAPVD1 Silent p.A1314A 0.34 TCGA-F4-6570-01 9 130164880 130164880 C - SLC2A8 Frame_Shift_Del p.S193Pfs*18 0.39 TCGA-F4-6570-01 9 130279254 130279254 C T FAM129B Silent p.A285A 0.31 TCGA-F4-6570-01 9 13140115 13140115 C T MPDZ Missense_Mutation p.A1292T 0.12 tolerated(0.84) benign(0.012) TCGA-F4-6570-01 9 131765150 131765150 C T NUP188 Missense_Mutation p.R1398C 0.33 tolerated(0.12) benign(0.391) TCGA-F4-6570-01 9 131857753 131857753 G A CRAT Missense_Mutation p.R602C 0.24 deleterious(0.01) possibly_damaging(0.794) TCGA-F4-6570-01 9 131882882 131882882 G A PPP2R4 Missense_Mutation p.R41H 0.19 deleterious(0) benign(0.002) TCGA-F4-6570-01 9 133511478 133511478 G A FUBP3 Missense_Mutation p.G559R 0.26 deleterious(0) possibly_damaging(0.641) TCGA-F4-6570-01 9 134351582 134351582 C T PRRC2B Missense_Mutation p.R1356C 0.48 deleterious(0.02) possibly_damaging(0.847) TCGA-F4-6570-01 9 135206778 135206778 C T SETX Missense_Mutation p.R299H 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-F4-6570-01 9 135940143 135940143 A G CEL Missense_Mutation p.K115E 0.34 tolerated(0.09) benign(0.391) TCGA-F4-6570-01 9 136597723 136597723 C T SARDH Missense_Mutation p.G111D 0.35 deleterious(0.02) probably_damaging(1) TCGA-F4-6570-01 9 137007763 137007763 C T WDR5 Silent p.D150D 0.15 TCGA-F4-6570-01 9 137714848 137714848 C T COL5A1 Missense_Mutation p.P1538L 0.28 unknown(0) TCGA-F4-6570-01 9 138378661 138378661 C - PPP1R26 Frame_Shift_Del p.S771Vfs*10 0.36 TCGA-F4-6570-01 9 138380112 138380112 A G PPP1R26 3'UTR 0.23 TCGA-F4-6570-01 9 138642799 138642799 C T KCNT1 Missense_Mutation p.R116W 0.29 deleterious(0) probably_damaging(0.981) TCGA-F4-6570-01 9 139350544 139350544 C T SEC16A Silent p.T1875T 0.15 TCGA-F4-6570-01 9 139395101 139395101 C T NOTCH1 Missense_Mutation p.R1946H 0.31 deleterious(0) probably_damaging(0.979) TCGA-F4-6570-01 9 139618050 139618050 C A FAM69B Silent p.R374R 0.35 TCGA-F4-6570-01 9 139699285 139699285 C T CCDC183 Intron 0.24 TCGA-F4-6570-01 9 139838522 139838522 C T FBXW5 Missense_Mutation p.G5D 0.55 tolerated(0.18) benign(0.006) TCGA-F4-6570-01 9 140146465 140146465 G A C9orf173 Missense_Mutation p.R94H 0.36 deleterious(0) probably_damaging(0.984) TCGA-F4-6570-01 9 140437894 140437894 T C PNPLA7 Missense_Mutation p.K166E 0.22 deleterious(0) possibly_damaging(0.767) TCGA-F4-6570-01 9 14748564 14748564 C T FREM1 Silent p.L1877L 0.09 TCGA-F4-6570-01 9 15171910 15171910 T - TTC39B 3'UTR 0.50 TCGA-F4-6570-01 9 16437203 16437203 G - BNC2 Frame_Shift_Del p.P330Lfs*7 0.52 TCGA-F4-6570-01 9 21077240 21077240 G A IFNB1 3'UTR 0.70 TCGA-F4-6570-01 9 21367655 21367655 C T IFNA13 Missense_Mutation p.D119N 0.35 tolerated(0.08) benign(0.063) TCGA-F4-6570-01 9 23701461 23701462 - T ELAVL2 Frame_Shift_Ins p.T210Nfs*29 0.16 TCGA-F4-6570-01 9 27172710 27172710 G A TEK Missense_Mutation p.C242Y 0.27 deleterious(0) probably_damaging(0.962) TCGA-F4-6570-01 9 27185545 27185545 C - TEK Frame_Shift_Del p.P417Lfs*10 0.61 TCGA-F4-6570-01 9 32434659 32434659 G A ACO1 Missense_Mutation p.A687T 0.10 deleterious(0.02) benign(0.157) TCGA-F4-6570-01 9 32449012 32449012 C T ACO1 Missense_Mutation p.T830I 0.20 deleterious(0.01) possibly_damaging(0.496) TCGA-F4-6570-01 9 33364060 33364060 C T NFX1 Missense_Mutation p.R976C 0.63 deleterious(0) possibly_damaging(0.899) TCGA-F4-6570-01 9 33675704 33675704 G C PTENP1 RNA 0.08 TCGA-F4-6570-01 9 34557567 34557567 C A CNTFR Silent p.L187L 0.63 TCGA-F4-6570-01 9 35062231 35062231 C T VCP Missense_Mutation p.A310T 0.11 deleterious(0) possibly_damaging(0.839) TCGA-F4-6570-01 9 36352823 36352823 C T RNF38 Missense_Mutation p.R365Q 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-F4-6570-01 9 36357867 36357867 C A RNF38 Missense_Mutation p.G215C 0.09 deleterious(0) probably_damaging(0.971) TCGA-F4-6570-01 9 36581730 36581730 G - MELK Frame_Shift_Del p.T19Qfs*19 0.15 TCGA-F4-6570-01 9 39144313 39144313 G A CNTNAP3 Silent p.G560G 0.18 TCGA-F4-6570-01 9 40772982 40772982 T C ZNF658 Missense_Mutation p.T765A 0.17 tolerated(0.07) probably_damaging(0.944) TCGA-F4-6570-01 9 421034 421034 G A DOCK8 Missense_Mutation p.R1370H 0.12 deleterious(0.01) benign(0.005) TCGA-F4-6570-01 9 6645287 6645287 C A GLDC Silent p.G71G 0.12 TCGA-F4-6570-01 9 66469095 66469095 G C RP11-262H14.1 RNA 0.16 TCGA-F4-6570-01 9 6893122 6893122 A T KDM4C Missense_Mutation p.I271F 0.09 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 9 72783676 72783676 A G MAMDC2 Missense_Mutation p.D488G 0.30 deleterious(0) benign(0.078) TCGA-F4-6570-01 9 74865699 74865699 C A GDA Silent p.P465P 0.40 TCGA-F4-6570-01 9 77562990 77562990 C T C9orf40 Missense_Mutation p.G187R 0.34 tolerated(0.11) probably_damaging(0.979) TCGA-F4-6570-01 9 79319703 79319703 G T PRUNE2 Missense_Mutation p.A2496E 0.13 deleterious(0.02) probably_damaging(0.965) TCGA-F4-6570-01 9 79968356 79968356 A C VPS13A Missense_Mutation p.K2484T 0.36 tolerated(0.35) benign(0.003) TCGA-F4-6570-01 9 85928652 85928652 G A FRMD3 Missense_Mutation p.P203S 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-F4-6570-01 9 88284475 88284475 A G AGTPBP1 Missense_Mutation p.L196S 0.34 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 9 91607004 91607004 G A C9orf47 3'UTR 0.35 TCGA-F4-6570-01 9 91619117 91619117 C G S1PR3 3'UTR 0.33 TCGA-F4-6570-01 9 91628486 91628486 C T SHC3 Missense_Mutation p.R554Q 0.14 deleterious(0) possibly_damaging(0.895) TCGA-F4-6570-01 9 95050109 95050109 G T IARS Nonsense_Mutation p.C120* 0.16 TCGA-F4-6570-01 9 95081587 95081587 T C NOL8 Silent p.T111T 0.29 TCGA-F4-6570-01 9 95237084 95237084 C A ASPN Missense_Mutation p.K32N 0.34 tolerated(0.26) benign(0.075) TCGA-F4-6570-01 9 96015265 96015265 G A WNK2 Silent p.P645P 0.27 TCGA-F4-6570-01 9 98232166 98232166 A - PTCH1 Frame_Shift_Del p.P593Lfs*30 0.30 TCGA-F4-6570-01 X 100088274 100088274 G A CSTF2 Missense_Mutation p.R438H 0.22 tolerated_low_confidence(0.1) probably_damaging(0.976) TCGA-F4-6570-01 X 100536759 100536759 C T TAF7L Silent p.T223T 0.34 TCGA-F4-6570-01 X 100808373 100808373 C T ARMCX1 Missense_Mutation p.P154S 0.41 tolerated(0.08) benign(0.007) TCGA-F4-6570-01 X 10085204 10085204 C T WWC3 Missense_Mutation p.R369C 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-F4-6570-01 X 10090779 10090779 G T WWC3 Missense_Mutation p.R584M 0.27 deleterious(0) probably_damaging(0.99) TCGA-F4-6570-01 X 101098114 101098114 G A NXF5 5'UTR 0.08 TCGA-F4-6570-01 X 101572033 101572033 C T NXF2 Missense_Mutation p.R53C 0.33 tolerated(0.18) possibly_damaging(0.54) TCGA-F4-6570-01 X 102529288 102529288 A G TCEAL5 Silent p.D68D 0.37 TCGA-F4-6570-01 X 102564736 102564736 G A BEX2 Missense_Mutation p.R89C 0.26 deleterious(0.02) benign(0.17) TCGA-F4-6570-01 X 102754781 102754781 C T RAB40A 3'UTR 0.15 TCGA-F4-6570-01 X 102930948 102930948 A - MORF4L2 3'UTR 0.35 TCGA-F4-6570-01 X 103041612 103041612 G A PLP1 Missense_Mutation p.R137Q 0.35 tolerated_low_confidence(0.43) benign(0.206) TCGA-F4-6570-01 X 105449372 105449372 A G MUM1L1 5'UTR 0.17 TCGA-F4-6570-01 X 105937542 105937543 - A RNF128 Frame_Shift_Ins p.I79Nfs*10 0.14 TCGA-F4-6570-01 X 106146491 106146491 A G RIPPLY1 Silent p.A9A 0.28 TCGA-F4-6570-01 X 109388039 109388039 T C TMEM164 Missense_Mutation p.L174S 0.24 tolerated(0.73) benign(0.108) TCGA-F4-6570-01 X 109697555 109697555 C T RGAG1 Missense_Mutation p.A1237V 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F4-6570-01 X 110574188 110574188 C A DCX Missense_Mutation p.S378I 0.19 deleterious(0.02) probably_damaging(0.923) TCGA-F4-6570-01 X 11204360 11204360 T - ARHGAP6 Frame_Shift_Del p.K423Nfs*19 0.09 TCGA-F4-6570-01 X 113997817 113997817 C T HTR2C Intron 0.33 TCGA-F4-6570-01 X 114953006 114953006 T C RP1-241P17.4 3'UTR 0.30 TCGA-F4-6570-01 X 117959503 117959503 G A ZCCHC12 Missense_Mutation p.R99H 0.13 tolerated(0.41) benign(0.024) TCGA-F4-6570-01 X 118771108 118771108 G A SEPT6 Missense_Mutation p.R280W 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6570-01 X 118893752 118893752 C T SOWAHD 3'UTR 0.11 TCGA-F4-6570-01 X 119005800 119005800 C A NDUFA1 5'UTR 0.56 TCGA-F4-6570-01 X 12157067 12157067 G A FRMPD4 5'UTR 0.31 TCGA-F4-6570-01 X 123516663 123516663 C A TENM1 Splice_Site p.X2433_splice 0.25 TCGA-F4-6570-01 X 125299283 125299283 C T DCAF12L2 Missense_Mutation p.V209M 0.32 deleterious(0) possibly_damaging(0.702) TCGA-F4-6570-01 X 128940435 128940435 C T ZDHHC9 Missense_Mutation p.E336K 0.26 tolerated(0.53) benign(0.002) TCGA-F4-6570-01 X 128962995 128962996 - C ZDHHC9 Frame_Shift_Ins p.A97Gfs*5 0.13 TCGA-F4-6570-01 X 129058768 129058768 C A UTP14A Intron 0.23 TCGA-F4-6570-01 X 129483310 129483310 C T SLC25A14 Missense_Mutation p.R135C 0.32 deleterious(0.03) benign(0.081) TCGA-F4-6570-01 X 1317422 1317422 G A CRLF2 Missense_Mutation p.R215W 0.30 deleterious(0) probably_damaging(0.985) TCGA-F4-6570-01 X 132160910 132160911 - A USP26 Frame_Shift_Ins p.A447Cfs*3 0.12 TCGA-F4-6570-01 X 134167161 134167161 G A FAM127A 3'UTR 0.39 TCGA-F4-6570-01 X 134426283 134426283 A G ZNF75D Silent p.Y176Y 0.28 TCGA-F4-6570-01 X 134947937 134947937 C A CT45A5 Missense_Mutation p.V130L 0.17 tolerated(1) benign(0) TCGA-F4-6570-01 X 134947940 134947940 G T CT45A5 Missense_Mutation p.Q129K 0.16 tolerated(0.33) benign(0.006) TCGA-F4-6570-01 X 134947943 134947943 A G CT45A5 Missense_Mutation p.C128R 0.17 tolerated(0.34) benign(0) TCGA-F4-6570-01 X 134988628 134988628 T C SAGE1 Silent p.P218P 0.29 TCGA-F4-6570-01 X 135313853 135313853 G A MAP7D3 Silent p.S421S 0.34 TCGA-F4-6570-01 X 135314193 135314194 - G MAP7D3 Frame_Shift_Ins p.Q308Pfs*25 0.19 TCGA-F4-6570-01 X 135432096 135432096 G T GPR112 Silent p.L2077L 0.29 TCGA-F4-6570-01 X 135630769 135630769 A T VGLL1 Missense_Mutation p.Q79L 0.32 deleterious(0.02) benign(0.051) TCGA-F4-6570-01 X 138643986 138643986 C T F9 Missense_Mutation p.T381I 0.35 tolerated(0.08) probably_damaging(0.931) TCGA-F4-6570-01 X 138774259 138774259 G A MCF2 Intron 0.38 TCGA-F4-6570-01 X 139040286 139040286 A T CXorf66 Missense_Mutation p.V60D 0.31 deleterious(0) possibly_damaging(0.904) TCGA-F4-6570-01 X 140008378 140008378 A G MIR320D2 RNA 0.30 TCGA-F4-6570-01 X 144905057 144905057 C T SLITRK2 Missense_Mutation p.P372S 0.09 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 X 149912833 149912833 C T MTMR1 Nonsense_Mutation p.R484* 0.20 TCGA-F4-6570-01 X 151899579 151899579 T C MAGEA12 3'UTR 0.28 TCGA-F4-6570-01 X 151935746 151935746 C T MAGEA3 Missense_Mutation p.G141R 0.27 tolerated(0.36) benign(0.001) TCGA-F4-6570-01 X 152088926 152088926 C T ZNF185 Silent p.Y195Y 0.10 TCGA-F4-6570-01 X 152735920 152735920 G A HAUS7 Silent p.F42F 0.21 TCGA-F4-6570-01 X 152801610 152801610 G A ATP2B3 5'UTR 0.31 TCGA-F4-6570-01 X 152860070 152860070 C T FAM58A Missense_Mutation p.V120M 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-F4-6570-01 X 152914924 152914924 C A DUSP9 Missense_Mutation p.P204H 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 X 152994812 152994812 G A ABCD1 Silent p.S342S 0.14 TCGA-F4-6570-01 X 153053319 153053319 G A IDH3G Missense_Mutation p.R167W 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-F4-6570-01 X 153072819 153072819 G - PDZD4 Frame_Shift_Del p.P101Qfs*44 0.30 TCGA-F4-6570-01 X 153141292 153141292 C A L1CAM 5'UTR 0.26 TCGA-F4-6570-01 X 153176440 153176440 T C ARHGAP4 Silent p.E579E 0.09 TCGA-F4-6570-01 X 153215748 153215748 C T HCFC1 Missense_Mutation p.A1984T 0.10 deleterious(0) probably_damaging(0.972) TCGA-F4-6570-01 X 153586724 153586724 C T FLNA Splice_Site p.X1533_splice 0.08 TCGA-F4-6570-01 X 153589807 153589807 C - FLNA Frame_Shift_Del p.A1026Lfs*20 0.40 TCGA-F4-6570-01 X 153692833 153692833 C T PLXNA3 Silent p.S639S 0.40 TCGA-F4-6570-01 X 154299811 154299811 G A BRCC3 Silent p.V3V 0.22 TCGA-F4-6570-01 X 154301690 154301690 G A BRCC3 Missense_Mutation p.R60H 0.16 tolerated_low_confidence(0.59) benign(0.011) TCGA-F4-6570-01 X 154528179 154528179 G A CLIC2 Missense_Mutation p.P71L 0.36 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 X 1546793 1546793 C A ASMTL Missense_Mutation p.G244V 0.59 deleterious(0.04) benign(0.025) TCGA-F4-6570-01 X 155004405 155004405 C A SPRY3 3'UTR 0.33 TCGA-F4-6570-01 X 15591537 15591537 A G ACE2 Silent p.C498C 0.24 TCGA-F4-6570-01 X 15818022 15818022 A G ZRSR2 Missense_Mutation p.D50G 0.26 deleterious(0.01) unknown(0) TCGA-F4-6570-01 X 16635370 16635370 C T CTPS2 Splice_Site p.X484_splice 0.19 TCGA-F4-6570-01 X 18276181 18276181 C T SCML2 Missense_Mutation p.G419E 0.27 deleterious(0) benign(0.424) TCGA-F4-6570-01 X 18671623 18671623 C T CDKL5 Missense_Mutation p.L1018F 0.21 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-F4-6570-01 X 19017362 19017362 G A GPR64 Missense_Mutation p.T789M 0.28 deleterious(0) probably_damaging(0.982) TCGA-F4-6570-01 X 19367475 19367475 A G PDHA1 Missense_Mutation p.T73A 0.37 deleterious(0.02) benign(0.082) TCGA-F4-6570-01 X 19971160 19971160 A T CXorf23 Missense_Mutation p.D525E 0.11 deleterious(0) probably_damaging(0.991) TCGA-F4-6570-01 X 22012585 22012585 T G SMS 3'UTR 0.21 TCGA-F4-6570-01 X 24608207 24608207 C T PCYT1B Missense_Mutation p.R140H 0.15 deleterious(0) probably_damaging(0.999) TCGA-F4-6570-01 X 302052 302052 T - PPP2R3B Frame_Shift_Del p.T389Hfs*70 0.12 TCGA-F4-6570-01 X 3229308 3229308 G A MXRA5 Silent p.N2312N 0.32 TCGA-F4-6570-01 X 3235195 3235195 G A MXRA5 Missense_Mutation p.P2176L 0.34 deleterious(0) probably_damaging(0.983) TCGA-F4-6570-01 X 32536107 32536107 A C DMD Intron 0.15 TCGA-F4-6570-01 X 34648569 34648569 T G TMEM47 Missense_Mutation p.K136T 0.31 deleterious(0) probably_damaging(0.996) TCGA-F4-6570-01 X 34675081 34675081 G A TMEM47 Silent p.V22V 0.42 TCGA-F4-6570-01 X 3573393 3573393 G A PRKX Silent p.G132G 0.31 TCGA-F4-6570-01 X 37553798 37553798 A C XK Silent p.R169R 0.32 TCGA-F4-6570-01 X 37655343 37655343 C T CYBB Missense_Mutation p.T208I 0.24 deleterious(0.03) probably_damaging(0.985) TCGA-F4-6570-01 X 38031305 38031305 G A SRPX Nonsense_Mutation p.R119* 0.32 TCGA-F4-6570-01 X 38267994 38267994 G C OTC Splice_Site p.X222_splice 0.10 TCGA-F4-6570-01 X 39913253 39913253 G - BCOR Frame_Shift_Del p.P1621Qfs*53 0.30 TCGA-F4-6570-01 X 40523721 40523721 G T MED14 Missense_Mutation p.P1096T 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6570-01 X 41082527 41082527 T C USP9X Missense_Mutation p.V2208A 0.29 tolerated(0.07) probably_damaging(0.93) TCGA-F4-6570-01 X 44007992 44007992 G A EFHC2 3'UTR 0.42 TCGA-F4-6570-01 X 44942751 44942751 C T KDM6A Missense_Mutation p.R1111C 0.14 deleterious(0) probably_damaging(0.932) TCGA-F4-6570-01 X 47069400 47069400 C A UBA1 Missense_Mutation p.R693S 0.15 tolerated(0.83) benign(0.004) TCGA-F4-6570-01 X 48687514 48687514 C A ERAS 5'UTR 0.15 TCGA-F4-6570-01 X 48759746 48759746 C T PQBP1 Missense_Mutation p.R177C 0.24 deleterious(0) probably_damaging(0.951) TCGA-F4-6570-01 X 48776121 48776121 G A PIM2 5'UTR 0.14 TCGA-F4-6570-01 X 48847481 48847481 C T GRIPAP1 Missense_Mutation p.A167T 0.15 benign(0.046) TCGA-F4-6570-01 X 48858654 48858654 C - GRIPAP1 5'UTR 0.36 TCGA-F4-6570-01 X 48930139 48930139 G A PRAF2 Missense_Mutation p.A117V 0.24 tolerated(0.27) benign(0.003) TCGA-F4-6570-01 X 49646664 49646664 A - USP27X 3'UTR 0.30 TCGA-F4-6570-01 X 50213444 50213444 G A DGKK RNA 0.32 TCGA-F4-6570-01 X 50345666 50345666 C A SHROOM4 Missense_Mutation p.E1303D 0.34 tolerated(0.15) benign(0.038) TCGA-F4-6570-01 X 50376274 50376274 C T SHROOM4 Silent p.R933R 0.09 TCGA-F4-6570-01 X 51487515 51487515 A G GSPT2 Missense_Mutation p.K265E 0.13 deleterious(0.01) probably_damaging(1) TCGA-F4-6570-01 X 53105735 53105735 C - GPR173 5'UTR 0.31 TCGA-F4-6570-01 X 53349703 53349703 G A IQSEC2 Missense_Mutation p.R207C 0.46 deleterious_low_confidence(0) benign(0.439) TCGA-F4-6570-01 X 53440234 53440234 C T SMC1A Missense_Mutation p.R188H 0.28 deleterious(0) probably_damaging(0.963) TCGA-F4-6570-01 X 54012270 54012270 C - PHF8 Frame_Shift_Del p.G739Dfs*126 0.28 TCGA-F4-6570-01 X 54069084 54069084 G A PHF8 Silent p.C62C 0.33 TCGA-F4-6570-01 X 57146506 57146506 A G SPIN2B Missense_Mutation p.L186P 0.33 deleterious(0) probably_damaging(1) TCGA-F4-6570-01 X 57146816 57146819 AAAG - SPIN2B Frame_Shift_Del p.L82Ifs*3 0.12 TCGA-F4-6570-01 X 5811010 5811010 A G NLGN4X Missense_Mutation p.S767P 0.27 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-F4-6570-01 X 5811659 5811659 T - NLGN4X Frame_Shift_Del p.K550Nfs*25 0.17 TCGA-F4-6570-01 X 62944531 62944531 T C ARHGEF9 Missense_Mutation p.N24D 0.21 tolerated(1) benign(0.001) TCGA-F4-6570-01 X 63412694 63412694 T G AMER1 Missense_Mutation p.K158T 0.32 deleterious(0.01) probably_damaging(0.949) TCGA-F4-6570-01 X 67943937 67943938 CA - STARD8 Frame_Shift_Del p.I1059Lfs*4 0.47 TCGA-F4-6570-01 X 69501557 69501557 C T ARR3 Missense_Mutation p.R370W 0.36 deleterious(0) probably_damaging(0.925) TCGA-F4-6570-01 X 69549351 69549351 A C KIF4A Missense_Mutation p.K292T 0.39 deleterious(0) probably_damaging(0.986) TCGA-F4-6570-01 X 69748982 69748982 A C TEX11 Missense_Mutation p.V929G 0.08 tolerated(0.07) benign(0.058) TCGA-F4-6570-01 X 70324159 70324159 C A CXorf65 Missense_Mutation p.A139S 0.17 tolerated(0.11) benign(0.158) TCGA-F4-6570-01 X 70329238 70329238 T A IL2RG Missense_Mutation p.E199D 0.15 tolerated(0.07) benign(0.215) TCGA-F4-6570-01 X 70472944 70472944 C T ZMYM3 Silent p.S54S 0.28 TCGA-F4-6570-01 X 71521494 71521494 C T CITED1 3'UTR 0.32 TCGA-F4-6570-01 X 74523416 74523416 A T UPRT 3'UTR 0.17 TCGA-F4-6570-01 X 74742895 74742895 C T ZDHHC15 5'UTR 0.27 TCGA-F4-6570-01 X 75648720 75648720 T C MAGEE1 Missense_Mutation p.S133P 0.09 tolerated_low_confidence(0.33) benign(0) TCGA-F4-6570-01 X 76849281 76849281 G A ATRX Missense_Mutation p.P1999S 0.32 benign(0.113) TCGA-F4-6570-01 X 77224344 77224344 T C PGAM4 3'UTR 0.25 TCGA-F4-6570-01 X 79985485 79985485 C T BRWD3 Missense_Mutation p.A388T 0.27 deleterious(0) probably_damaging(0.979) TCGA-F4-6570-01 X 82763518 82763518 C T POU3F4 Silent p.S62S 0.34 TCGA-F4-6570-01 X 83362639 83362640 - T RPS6KA6 Frame_Shift_Ins p.T368Nfs*3 0.24 TCGA-F4-6570-01 X 83724153 83724153 G A HDX Missense_Mutation p.A193V 0.11 tolerated(0.43) benign(0.021) TCGA-F4-6570-01 X 8434476 8434476 C T VCX3B 3'UTR 0.47 TCGA-F4-6570-01 X 84525078 84525078 G A ZNF711 Missense_Mutation p.G345D 0.14 deleterious(0.01) benign(0.004) TCGA-F4-6570-01 X 85403979 85403980 - C DACH2 Frame_Shift_Ins p.V121Rfs*6 0.42 TCGA-F4-6570-01 X 86890749 86890749 C A KLHL4 Nonsense_Mutation p.C633* 0.13 TCGA-F4-6570-01 X 8764367 8764367 C T FAM9A Missense_Mutation p.A144T 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-F4-6570-01 X 96200545 96200545 G A DIAPH2 Silent p.A488A 0.21 TCGA-F4-6570-01 X 9660202 9660202 G - TBL1X Frame_Shift_Del p.G268Afs*7 0.27 TCGA-F4-6570-01 X 9709443 9709443 T C GPR143 Missense_Mutation p.T274A 0.29 tolerated(0.13) benign(0.004) TCGA-F4-6570-01 X 9714127 9714127 A C GPR143 Silent p.V205V 0.15 TCGA-F4-6570-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.44 TCGA-F4-6703-01 10 102265806 102265806 C G SEC31B Missense_Mutation p.Q345H 0.10 tolerated(0.1) benign(0.016) TCGA-F4-6703-01 10 102732677 102732677 G T SEMA4G Missense_Mutation p.G3V 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.821) TCGA-F4-6703-01 10 116045758 116045758 G A VWA2 Missense_Mutation p.G353D 0.13 tolerated(0.06) benign(0.044) TCGA-F4-6703-01 10 120796668 120796668 G A EIF3A Silent p.D1294D 0.16 TCGA-F4-6703-01 10 12197866 12197866 C T SEC61A2 Silent p.A184A 0.11 TCGA-F4-6703-01 10 129906092 129906092 C T MKI67 Missense_Mutation p.E1338K 0.08 tolerated(0.57) benign(0.191) TCGA-F4-6703-01 10 13217629 13217629 G - MCM10 Frame_Shift_Del p.E240Kfs*26 0.15 TCGA-F4-6703-01 10 135204869 135204869 G A RP11-108K14.8 Missense_Mutation p.A22T 0.12 tolerated_low_confidence(0.08) benign(0.011) TCGA-F4-6703-01 10 16873309 16873309 C G CUBN Missense_Mutation p.K3490N 0.09 deleterious(0.03) possibly_damaging(0.9) TCGA-F4-6703-01 10 16873341 16873341 A G CUBN Missense_Mutation p.S3480P 0.15 tolerated(0.46) benign(0.074) TCGA-F4-6703-01 10 31810580 31810580 G A ZEB1 Missense_Mutation p.A774T 0.12 tolerated(0.36) benign(0.029) TCGA-F4-6703-01 10 37436357 37436357 A C ANKRD30A Missense_Mutation p.K449N 0.11 tolerated(0.08) possibly_damaging(0.788) TCGA-F4-6703-01 10 50682211 50682211 T G ERCC6 Missense_Mutation p.K820N 0.19 tolerated(0.11) benign(0.011) TCGA-F4-6703-01 10 52390517 52390517 C A RP11-50E11.3 RNA 0.14 TCGA-F4-6703-01 10 61829961 61829961 G A ANK3 Missense_Mutation p.R3560W 0.09 possibly_damaging(0.73) TCGA-F4-6703-01 10 7214497 7214497 C T SFMBT2 Missense_Mutation p.R704Q 0.14 deleterious(0.02) benign(0.067) TCGA-F4-6703-01 10 75035286 75035286 A G TTC18 Missense_Mutation p.V934A 0.15 tolerated(1) benign(0.064) TCGA-F4-6703-01 10 88769657 88769657 G A RP11-96C23.10 RNA 0.15 TCGA-F4-6703-01 10 89725053 89725053 T G PTEN Missense_Mutation p.Y346D 0.12 tolerated(0.09) benign(0.202) TCGA-F4-6703-01 10 90768708 90768708 T - FAS Frame_Shift_Del p.C135Vfs*52 0.13 TCGA-F4-6703-01 10 93719808 93719808 T G BTAF1 Missense_Mutation p.V387G 0.13 deleterious(0) probably_damaging(0.973) TCGA-F4-6703-01 10 99512859 99512859 T C ZFYVE27 Missense_Mutation p.L326P 0.09 deleterious(0) probably_damaging(0.975) TCGA-F4-6703-01 11 1019436 1019436 G T MUC6 Missense_Mutation p.A1290D 0.11 unknown(0) TCGA-F4-6703-01 11 102711223 102711223 G A MMP3 Missense_Mutation p.L243F 0.10 tolerated(1) benign(0) TCGA-F4-6703-01 11 10647748 10647748 G C MRVI1 Missense_Mutation p.A378G 0.28 deleterious(0.02) benign(0.001) TCGA-F4-6703-01 11 113816765 113816765 G A HTR3B Missense_Mutation p.R411H 0.12 tolerated(0.15) benign(0.039) TCGA-F4-6703-01 11 115375015 115375015 A G CADM1 Missense_Mutation p.F33S 0.10 tolerated(0.2) benign(0) TCGA-F4-6703-01 11 118919770 118919770 T - HYOU1 Frame_Shift_Del p.K651Rfs*46 0.11 TCGA-F4-6703-01 11 121428040 121428040 C T SORL1 Silent p.G863G 0.09 TCGA-F4-6703-01 11 124624569 124624569 G A ESAM Missense_Mutation p.A233V 0.08 deleterious(0.01) possibly_damaging(0.833) TCGA-F4-6703-01 11 1264225 1264225 C T MUC5B Missense_Mutation p.P2039S 0.13 unknown(0) TCGA-F4-6703-01 11 132016353 132016353 C T NTM Silent p.C115C 0.10 TCGA-F4-6703-01 11 14856585 14856585 G T PDE3B Missense_Mutation p.R755L 0.20 deleterious(0) probably_damaging(0.96) TCGA-F4-6703-01 11 17409333 17409333 G - KCNJ11 Frame_Shift_Del p.S103Afs*27 0.16 TCGA-F4-6703-01 11 30034344 30034344 A G KCNA4 5'UTR 0.15 TCGA-F4-6703-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.09 TCGA-F4-6703-01 11 34482796 34482796 A G CAT Splice_Site p.X353_splice 0.10 TCGA-F4-6703-01 11 373028 373028 G A B4GALNT4 Silent p.T149T 0.11 TCGA-F4-6703-01 11 45926551 45926551 A - MAPK8IP1 Frame_Shift_Del p.N643Tfs*91 0.16 TCGA-F4-6703-01 11 49197474 49197474 C T FOLH1 Nonsense_Mutation p.W319* 0.12 TCGA-F4-6703-01 11 55890167 55890167 T C OR8H3 Silent p.L107L 0.05 TCGA-F4-6703-01 11 56020223 56020223 T - OR5T3 Frame_Shift_Del p.L184Yfs*7 0.08 TCGA-F4-6703-01 11 58892942 58892942 A G FAM111B Missense_Mutation p.S458G 0.11 tolerated(0.09) benign(0.32) TCGA-F4-6703-01 11 59611507 59611507 G T GIF Missense_Mutation p.P34H 0.14 tolerated(0.23) benign(0.006) TCGA-F4-6703-01 11 60694689 60694689 G T TMEM132A Missense_Mutation p.Q38H 0.09 tolerated(0.07) benign(0.009) TCGA-F4-6703-01 11 61547021 61547022 - C MYRF Frame_Shift_Ins p.K745Qfs*57 0.11 TCGA-F4-6703-01 11 62520266 62520266 A G ZBTB3 Missense_Mutation p.S341P 0.12 tolerated(0.13) benign(0.001) TCGA-F4-6703-01 11 6261906 6261906 C T CNGA4 Silent p.H294H 0.10 TCGA-F4-6703-01 11 65393390 65393390 G A PCNXL3 Missense_Mutation p.V1082M 0.11 deleterious(0) probably_damaging(0.99) TCGA-F4-6703-01 11 6568324 6568324 A G DNHD1 Missense_Mutation p.H2052R 0.17 benign(0.004) TCGA-F4-6703-01 11 65767577 65767577 C T EIF1AD Missense_Mutation p.R48H 0.09 tolerated(0.09) benign(0.012) TCGA-F4-6703-01 11 67191914 67191914 G A CARNS1 Missense_Mutation p.A899T 0.09 tolerated(0.29) benign(0.006) TCGA-F4-6703-01 11 67263058 67263058 G A PITPNM1 Missense_Mutation p.T778M 0.10 tolerated(0.12) benign(0.148) TCGA-F4-6703-01 11 67377974 67377974 G A NDUFV1 Silent p.A211A 0.16 TCGA-F4-6703-01 11 70118424 70118424 G A PPFIA1 Missense_Mutation p.R49H 0.10 deleterious(0) possibly_damaging(0.886) TCGA-F4-6703-01 11 71952252 71952252 G A PHOX2A Missense_Mutation p.A100V 0.11 deleterious(0.01) benign(0.291) TCGA-F4-6703-01 11 72290622 72290622 G T PDE2A Missense_Mutation p.L738I 0.11 tolerated(0.07) probably_damaging(0.975) TCGA-F4-6703-01 11 75279869 75279869 G A SERPINH1 Missense_Mutation p.R239Q 0.10 tolerated(0.44) benign(0.167) TCGA-F4-6703-01 11 77085371 77085371 A G PAK1 Splice_Site p.X159_splice 0.14 TCGA-F4-6703-01 11 830599 830599 A G EFCAB4A Intron 0.15 TCGA-F4-6703-01 11 9459334 9459334 A G IPO7 Missense_Mutation p.R768G 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-F4-6703-01 11 9459341 9459341 C A IPO7 Missense_Mutation p.T770K 0.11 deleterious(0) probably_damaging(0.984) TCGA-F4-6703-01 11 94732500 94732500 C T KDM4D 3'UTR 0.06 TCGA-F4-6703-01 12 10147797 10147797 G A CLEC1B Missense_Mutation p.R163C 0.23 deleterious(0) probably_damaging(0.997) TCGA-F4-6703-01 12 10167251 10167251 A C CLEC12B Missense_Mutation p.E107A 0.11 tolerated(0.07) benign(0.115) TCGA-F4-6703-01 12 104031869 104031869 G A STAB2 Missense_Mutation p.C262Y 0.09 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 12 104152953 104152953 A G STAB2 Missense_Mutation p.S2384G 0.12 tolerated(0.1) benign(0.393) TCGA-F4-6703-01 12 11083358 11083358 T C PRH2 Silent p.N66N 0.11 TCGA-F4-6703-01 12 111748322 111748322 A G CUX2 Missense_Mutation p.Y579C 0.09 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 12 112601936 112601936 G A HECTD4 Silent p.S4080S 0.17 TCGA-F4-6703-01 12 120652727 120652727 G A PXN Silent p.S407S 0.08 TCGA-F4-6703-01 12 123262203 123262203 C T CCDC62 Silent p.L68L 0.17 TCGA-F4-6703-01 12 124411201 124411201 T C DNAH10 Missense_Mutation p.M3862T 0.15 benign(0.007) TCGA-F4-6703-01 12 124414986 124414986 G A DNAH10 Missense_Mutation p.R4099H 0.13 probably_damaging(1) TCGA-F4-6703-01 12 124832445 124832445 C T NCOR2 Missense_Mutation p.R1333H 0.19 probably_damaging(0.999) TCGA-F4-6703-01 12 132335651 132335651 A G MMP17 Silent p.Q548Q 0.16 TCGA-F4-6703-01 12 132414299 132414299 C T PUS1 Missense_Mutation p.A11V 0.12 deleterious_low_confidence(0.03) benign(0.001) TCGA-F4-6703-01 12 132588632 132588632 G A EP400NL Missense_Mutation p.A23T 0.13 tolerated_low_confidence(0.89) benign(0) TCGA-F4-6703-01 12 132588886 132588886 A G EP400NL Intron 0.08 TCGA-F4-6703-01 12 132588983 132588983 C T EP400NL Intron 0.14 TCGA-F4-6703-01 12 133304674 133304674 C T ANKLE2 Silent p.P853P 0.08 TCGA-F4-6703-01 12 14769611 14769611 C T GUCY2C Missense_Mutation p.E976K 0.14 tolerated(0.16) benign(0.155) TCGA-F4-6703-01 12 15803891 15803891 G A EPS8 Missense_Mutation p.R434C 0.08 deleterious(0) probably_damaging(0.985) TCGA-F4-6703-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.13 deleterious(0) benign(0.361) TCGA-F4-6703-01 12 31237905 31237905 G A DDX11 Silent p.R161R 0.09 TCGA-F4-6703-01 12 3702453 3702453 G T PRMT8 3'UTR 0.22 TCGA-F4-6703-01 12 40928528 40928528 T A MUC19 Intron 0.12 TCGA-F4-6703-01 12 4702331 4702331 G T DYRK4 Missense_Mutation p.K94N 0.13 tolerated(0.31) probably_damaging(0.917) TCGA-F4-6703-01 12 49087470 49087470 C T CCNT1 Silent p.K509K 0.19 TCGA-F4-6703-01 12 49432224 49432224 T C KMT2D Missense_Mutation p.E2972G 0.21 benign(0.019) TCGA-F4-6703-01 12 52566880 52566880 G A KRT80 Missense_Mutation p.A300V 0.20 deleterious(0) possibly_damaging(0.757) TCGA-F4-6703-01 12 53454995 53454995 G A TENC1 Missense_Mutation p.S1112N 0.10 tolerated(0.2) benign(0.003) TCGA-F4-6703-01 12 56121051 56121051 C - CD63 Frame_Shift_Del p.A47Lfs*37 0.11 TCGA-F4-6703-01 12 56295866 56295866 G - WIBG Frame_Shift_Del p.T136Qfs*19 0.12 TCGA-F4-6703-01 12 56575491 56575491 A G SMARCC2 Silent p.D279D 0.17 TCGA-F4-6703-01 12 59268113 59268114 - T LRIG3 Splice_Site p.X947_splice 0.16 TCGA-F4-6703-01 12 6167111 6167111 G A VWF Missense_Mutation p.R545W 0.13 deleterious(0.03) benign(0.332) TCGA-F4-6703-01 12 6428035 6428035 G A PLEKHG6 Missense_Mutation p.R467Q 0.13 deleterious(0.03) benign(0.192) TCGA-F4-6703-01 12 65632509 65632509 G T LEMD3 Missense_Mutation p.Q612H 0.11 deleterious(0.02) probably_damaging(0.917) TCGA-F4-6703-01 12 6969540 6969540 A C USP5 Missense_Mutation p.D410A 0.13 tolerated(0.73) benign(0.003) TCGA-F4-6703-01 12 7021987 7021987 C T LRRC23 Silent p.D284D 0.21 TCGA-F4-6703-01 12 7249132 7249132 T C C1RL Missense_Mutation p.Y440C 0.12 deleterious(0) probably_damaging(0.962) TCGA-F4-6703-01 12 7310099 7310099 G A CLSTN3 Missense_Mutation p.A848T 0.13 deleterious(0) possibly_damaging(0.581) TCGA-F4-6703-01 12 75672715 75672715 A C CAPS2 Intron 0.14 TCGA-F4-6703-01 12 75875642 75875642 C T GLIPR1 Missense_Mutation p.A68V 0.13 deleterious(0) probably_damaging(0.994) TCGA-F4-6703-01 12 77449703 77449703 G A E2F7 Missense_Mutation p.R101W 0.10 deleterious(0.03) benign(0.099) TCGA-F4-6703-01 12 86374168 86374168 T - MGAT4C Frame_Shift_Del p.G113Efs*20 0.18 TCGA-F4-6703-01 12 95681545 95681545 T G VEZT Missense_Mutation p.I478M 0.11 deleterious(0) possibly_damaging(0.594) TCGA-F4-6703-01 12 97885751 97885751 C T MIR1251 RNA 0.16 TCGA-F4-6703-01 12 992127 992127 C T WNK1 Nonsense_Mutation p.R1131* 0.12 TCGA-F4-6703-01 13 100008478 100008478 T C UBAC2 Intron 0.09 TCGA-F4-6703-01 13 107196435 107196435 C T ARGLU1 Missense_Mutation p.R244Q 0.07 tolerated(0.75) benign(0.417) TCGA-F4-6703-01 13 109777480 109777480 C G MYO16 Missense_Mutation p.R1164G 0.14 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 13 113173303 113173303 C T TUBGCP3 Missense_Mutation p.G646R 0.12 deleterious(0) possibly_damaging(0.842) TCGA-F4-6703-01 13 21557537 21557537 A G LATS2 Missense_Mutation p.F770L 0.11 deleterious(0) probably_damaging(0.996) TCGA-F4-6703-01 13 29008314 29008314 C T FLT1 Nonsense_Mutation p.W186* 0.12 TCGA-F4-6703-01 13 32799135 32799135 C T FRY Missense_Mutation p.A1661V 0.11 deleterious(0.02) benign(0.298) TCGA-F4-6703-01 13 35630248 35630248 G T NBEA Missense_Mutation p.W358C 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 13 38320292 38320292 G T TRPC4 Missense_Mutation p.L227I 0.11 deleterious(0) probably_damaging(0.99) TCGA-F4-6703-01 13 44432973 44432973 T - CCDC122 Frame_Shift_Del p.T206Lfs*14 0.09 TCGA-F4-6703-01 13 46542897 46542897 C T ZC3H13 Missense_Mutation p.R1261Q 0.12 unknown(0) TCGA-F4-6703-01 13 48987196 48987196 T G LPAR6 5'UTR 0.15 TCGA-F4-6703-01 13 53035837 53035837 A - CKAP2 Frame_Shift_Del p.T295Qfs*14 0.09 TCGA-F4-6703-01 13 77817958 77817958 G T MYCBP2 Missense_Mutation p.P799H 0.11 probably_damaging(0.998) TCGA-F4-6703-01 13 99537991 99537991 G A DOCK9 Missense_Mutation p.T744M 0.11 tolerated(0.05) probably_damaging(1) TCGA-F4-6703-01 14 104563914 104563914 C T ASPG Silent p.S151S 0.10 TCGA-F4-6703-01 14 105353404 105353404 C T CEP170B Missense_Mutation p.P943L 0.11 deleterious(0.03) benign(0.077) TCGA-F4-6703-01 14 20665629 20665629 C T OR11G2 Silent p.S45S 0.12 TCGA-F4-6703-01 14 21679609 21679609 C T HNRNPC Missense_Mutation p.D265N 0.08 deleterious(0.03) benign(0.002) TCGA-F4-6703-01 14 24542762 24542762 C T CPNE6 Silent p.L75L 0.08 TCGA-F4-6703-01 14 29261225 29261225 C T C14orf23 Nonsense_Mutation p.Q88* 0.15 TCGA-F4-6703-01 14 31575927 31575927 T C HECTD1 Missense_Mutation p.K2384R 0.09 tolerated(0.22) probably_damaging(0.982) TCGA-F4-6703-01 14 45475266 45475266 G A FAM179B Silent p.S900S 0.12 TCGA-F4-6703-01 14 50272787 50272787 A C NEMF Silent p.A603A 0.23 TCGA-F4-6703-01 14 56137474 56137475 - A KTN1 Frame_Shift_Ins p.A1102Gfs*15 0.16 TCGA-F4-6703-01 14 64935058 64935058 G T AKAP5 5'UTR 0.12 TCGA-F4-6703-01 14 78203399 78203399 C T SNW1 Missense_Mutation p.G185R 0.09 deleterious(0) possibly_damaging(0.582) TCGA-F4-6703-01 14 94417475 94417475 G A ASB2 Silent p.D250D 0.17 TCGA-F4-6703-01 14 94700026 94700027 - A PPP4R4 Frame_Shift_Ins p.T186Nfs*8 0.09 TCGA-F4-6703-01 14 94844913 94844913 A - SERPINA1 Frame_Shift_Del p.L377* 0.15 TCGA-F4-6703-01 14 94935806 94935806 G A SERPINA9 Silent p.P142P 0.10 TCGA-F4-6703-01 15 22872673 22872673 A G TUBGCP5 Intron 0.30 TCGA-F4-6703-01 15 23811091 23811091 C A MKRN3 Silent p.G54G 0.16 TCGA-F4-6703-01 15 31354816 31354816 G A TRPM1 Missense_Mutation p.A369V 0.09 tolerated(0.4) benign(0.005) TCGA-F4-6703-01 15 33927950 33927950 C T RYR3 Missense_Mutation p.A1104V 0.18 probably_damaging(0.979) TCGA-F4-6703-01 15 40590103 40590103 G A PLCB2 Silent p.L405L 0.21 TCGA-F4-6703-01 15 40594228 40594228 A - PLCB2 Frame_Shift_Del p.F171Sfs*43 0.12 TCGA-F4-6703-01 15 41063586 41063586 A G C15orf62 3'UTR 0.12 TCGA-F4-6703-01 15 41102881 41102881 A G ZFYVE19 Missense_Mutation p.Q251R 0.15 deleterious(0.01) possibly_damaging(0.641) TCGA-F4-6703-01 15 42245986 42245986 C T EHD4 Missense_Mutation p.R130H 0.22 tolerated(0.12) possibly_damaging(0.616) TCGA-F4-6703-01 15 45003779 45003779 T C B2M Missense_Mutation p.L12P 0.15 deleterious(0) possibly_damaging(0.505) TCGA-F4-6703-01 15 51806652 51806652 A - DMXL2 Frame_Shift_Del p.Q878Sfs*17 0.09 TCGA-F4-6703-01 15 55970075 55970075 G A PRTG Missense_Mutation p.A434V 0.14 deleterious(0.05) probably_damaging(0.979) TCGA-F4-6703-01 15 59501015 59501015 G A MYO1E Silent p.D465D 0.11 TCGA-F4-6703-01 15 79750232 79750232 G A KIAA1024 Silent p.R581R 0.11 TCGA-F4-6703-01 15 83346504 83346504 T C AP3B2 Missense_Mutation p.I433V 0.25 deleterious(0.02) possibly_damaging(0.549) TCGA-F4-6703-01 15 89847143 89847143 C T FANCI Missense_Mutation p.R1019W 0.19 tolerated(0.23) benign(0.003) TCGA-F4-6703-01 15 92706171 92706171 T C SLCO3A1 Missense_Mutation p.C647R 0.08 deleterious(0.01) probably_damaging(0.938) TCGA-F4-6703-01 16 15528577 15528577 G A C16orf45 Missense_Mutation p.V23M 0.15 tolerated(0.06) benign(0.446) TCGA-F4-6703-01 16 16205318 16205318 T C ABCC1 Silent p.H986H 0.14 TCGA-F4-6703-01 16 19049362 19049362 T C TMC7 Missense_Mutation p.M391T 0.12 tolerated(0.66) benign(0.065) TCGA-F4-6703-01 16 20395965 20395965 A G PDILT Splice_Site p.X137_splice 0.08 TCGA-F4-6703-01 16 20554545 20554545 A C ACSM2B Missense_Mutation p.F441V 0.10 deleterious(0) probably_damaging(0.982) TCGA-F4-6703-01 16 20566785 20566785 C T ACSM2B Missense_Mutation p.M134I 0.13 tolerated(1) benign(0.06) TCGA-F4-6703-01 16 20682989 20682989 C T ACSM1 Missense_Mutation p.A206T 0.12 deleterious(0.02) probably_damaging(0.933) TCGA-F4-6703-01 16 20996710 20996710 C T DNAH3 Missense_Mutation p.A2452T 0.14 tolerated(0.07) benign(0.003) TCGA-F4-6703-01 16 21073986 21073986 G A DNAH3 Silent p.N1179N 0.20 TCGA-F4-6703-01 16 23497474 23497475 - T GGA2 Splice_Site p.X221_splice 0.10 TCGA-F4-6703-01 16 23654330 23654330 G A DCTN5 Missense_Mutation p.V35I 0.10 tolerated(0.94) benign(0.017) TCGA-F4-6703-01 16 27459823 27459823 G A IL21R Intron 0.14 TCGA-F4-6703-01 16 27788288 27788288 G A KIAA0556 Missense_Mutation p.V1497M 0.09 deleterious(0) probably_damaging(0.984) TCGA-F4-6703-01 16 29825734 29825734 G A PRRT2 Silent p.A320A 0.25 TCGA-F4-6703-01 16 29825740 29825740 G - PRRT2 Frame_Shift_Del p.G324Efs*13 0.29 TCGA-F4-6703-01 16 30040788 30040788 G A FAM57B Silent p.I58I 0.16 TCGA-F4-6703-01 16 30100295 30100295 A G TBX6 Missense_Mutation p.L197P 0.12 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 16 30370627 30370627 G A TBC1D10B Missense_Mutation p.P503L 0.14 deleterious(0) possibly_damaging(0.679) TCGA-F4-6703-01 16 3336043 3336043 C T ZNF263 Silent p.D221D 0.12 TCGA-F4-6703-01 16 4165223 4165223 C T ADCY9 Missense_Mutation p.R74H 0.12 tolerated_low_confidence(0.13) possibly_damaging(0.668) TCGA-F4-6703-01 16 46649860 46649860 G T SHCBP1 Silent p.V198V 0.11 TCGA-F4-6703-01 16 53352154 53352155 - A CHD9 Frame_Shift_Ins p.R2525Kfs*9 0.11 TCGA-F4-6703-01 16 53686782 53686782 A G RPGRIP1L Missense_Mutation p.L606P 0.13 deleterious(0) probably_damaging(0.998) TCGA-F4-6703-01 16 57507843 57507843 C T DOK4 Silent p.R236R 0.12 TCGA-F4-6703-01 16 58589340 58589340 A - CNOT1 Frame_Shift_Del p.Q904Sfs*9 0.10 TCGA-F4-6703-01 16 62055135 62055135 C T CDH8 Missense_Mutation p.R58H 0.12 deleterious(0) benign(0.277) TCGA-F4-6703-01 16 66997110 66997110 C T CES3 Silent p.D37D 0.16 TCGA-F4-6703-01 16 67289030 67289030 T C SLC9A5 Silent p.N199N 0.11 TCGA-F4-6703-01 16 67645339 67645339 A - CTCF Frame_Shift_Del p.T204Qfs*18 0.10 TCGA-F4-6703-01 16 69368720 69368720 G A RP11-343C2.12 Missense_Mutation p.R19W 0.08 deleterious(0) probably_damaging(0.986) TCGA-F4-6703-01 16 71015316 71015316 G A HYDIN Silent p.L1496L 0.08 TCGA-F4-6703-01 16 72821071 72821071 T A ZFHX3 Nonsense_Mutation p.R3702* 0.19 TCGA-F4-6703-01 16 81703831 81703831 G T CMIP Missense_Mutation p.V304L 0.15 tolerated(0.13) probably_damaging(0.97) TCGA-F4-6703-01 16 83999259 83999259 C A OSGIN1 Missense_Mutation p.L361I 0.10 tolerated(0.09) possibly_damaging(0.834) TCGA-F4-6703-01 16 87446052 87446052 C T ZCCHC14 Missense_Mutation p.A622T 0.14 tolerated(0.2) benign(0.067) TCGA-F4-6703-01 16 89783117 89783117 C T VPS9D1 Intron 0.15 TCGA-F4-6703-01 16 89805555 89805555 C T FANCA Missense_Mutation p.E1385K 0.12 tolerated(0.34) benign(0.292) TCGA-F4-6703-01 16 90001934 90001934 C A TUBB3 Missense_Mutation p.R359S 0.12 deleterious_low_confidence(0.04) benign(0.061) TCGA-F4-6703-01 16 9210540 9210540 T C C16orf72 Missense_Mutation p.M200T 0.13 deleterious(0.01) benign(0.269) TCGA-F4-6703-01 17 1386346 1386346 C T MYO1C Missense_Mutation p.V119M 0.13 deleterious(0.03) possibly_damaging(0.808) TCGA-F4-6703-01 17 17931608 17931608 T C ATPAF2 Missense_Mutation p.I88V 0.10 tolerated(0.35) benign(0.012) TCGA-F4-6703-01 17 19319491 19319491 G A RNF112 3'UTR 0.17 TCGA-F4-6703-01 17 1960126 1960126 G A HIC1 Missense_Mutation p.A67T 0.08 deleterious(0) possibly_damaging(0.787) TCGA-F4-6703-01 17 19705138 19705138 G A ULK2 Nonsense_Mutation p.R465* 0.21 TCGA-F4-6703-01 17 19845147 19845147 C A AKAP10 Missense_Mutation p.M351I 0.12 tolerated(0.42) benign(0.032) TCGA-F4-6703-01 17 2238854 2238854 C T TSR1 Silent p.L124L 0.10 TCGA-F4-6703-01 17 2600141 2600141 G A CLUH Missense_Mutation p.S648F 0.12 tolerated(0.06) benign(0.025) TCGA-F4-6703-01 17 27308424 27308424 A G SEZ6 Missense_Mutation p.I230T 0.50 tolerated(0.17) benign(0.003) TCGA-F4-6703-01 17 29622411 29622411 C T OMG Silent p.T313T 0.16 TCGA-F4-6703-01 17 3030753 3030753 G A OR1G1 Silent p.F31F 0.12 TCGA-F4-6703-01 17 30615968 30615968 A C RHBDL3 Missense_Mutation p.K151T 0.16 deleterious(0) possibly_damaging(0.87) TCGA-F4-6703-01 17 31082595 31082595 A G MYO1D Missense_Mutation p.M461T 0.11 tolerated(0.05) benign(0.005) TCGA-F4-6703-01 17 33269558 33269558 A C CCT6B Missense_Mutation p.L277R 0.10 deleterious(0) probably_damaging(0.986) TCGA-F4-6703-01 17 34072698 34072698 C A GAS2L2 Missense_Mutation p.E606D 0.13 tolerated(0.23) possibly_damaging(0.702) TCGA-F4-6703-01 17 34340864 34340864 G T CCL23 Silent p.S74S 0.13 TCGA-F4-6703-01 17 36638270 36638270 T C ARHGAP23 Silent p.S879S 0.13 TCGA-F4-6703-01 17 39305440 39305440 A G KRTAP4-5 3'UTR 0.12 TCGA-F4-6703-01 17 39305835 39305835 A G KRTAP4-5 Missense_Mutation p.I62T 0.16 unknown(0) TCGA-F4-6703-01 17 39538253 39538253 C T KRT34 Silent p.A124A 0.14 TCGA-F4-6703-01 17 40001914 40001914 G A KLHL10 Silent p.E407E 0.08 TCGA-F4-6703-01 17 40125524 40125524 C T CNP Missense_Mutation p.T283M 0.14 tolerated(0.16) benign(0.14) TCGA-F4-6703-01 17 42164826 42164826 G A HDAC5 Missense_Mutation p.A614V 0.10 tolerated(0.43) benign(0.036) TCGA-F4-6703-01 17 42266785 42266785 C A TMUB2 Missense_Mutation p.P144H 0.14 deleterious(0.04) benign(0.396) TCGA-F4-6703-01 17 43216408 43216408 C T ACBD4 Silent p.R236R 0.09 TCGA-F4-6703-01 17 44952582 44952582 G C WNT9B Silent p.G150G 0.08 TCGA-F4-6703-01 17 46874535 46874535 A G TTLL6 Missense_Mutation p.L267P 0.14 deleterious(0) probably_damaging(0.997) TCGA-F4-6703-01 17 48741134 48741134 C T ABCC3 Missense_Mutation p.S364L 0.10 deleterious(0) benign(0.327) TCGA-F4-6703-01 17 5359354 5359354 T C DHX33 Missense_Mutation p.Y333C 0.16 tolerated(0.09) possibly_damaging(0.799) TCGA-F4-6703-01 17 54672809 54672809 G T NOG 3'UTR 0.07 TCGA-F4-6703-01 17 54981737 54981737 C A TRIM25 Missense_Mutation p.R269M 0.17 deleterious(0) probably_damaging(0.992) TCGA-F4-6703-01 17 56291665 56291665 G - MKS1 Frame_Shift_Del p.P200Lfs*29 0.10 TCGA-F4-6703-01 17 57060180 57060180 C G PPM1E 3'Flank 0.17 TCGA-F4-6703-01 17 59489468 59489468 G T C17orf82 Missense_Mutation p.E44D 0.19 tolerated_low_confidence(0.17) benign(0.388) TCGA-F4-6703-01 17 61574235 61574235 G A ACE Missense_Mutation p.A1194T 0.21 tolerated(0.17) possibly_damaging(0.61) TCGA-F4-6703-01 17 62510426 62510426 G A CEP95 Missense_Mutation p.G106D 0.13 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 17 64880755 64880755 G A CACNG5 Missense_Mutation p.A183T 0.12 deleterious(0.05) possibly_damaging(0.563) TCGA-F4-6703-01 17 648856 648856 G A GEMIN4 Silent p.Y809Y 0.09 TCGA-F4-6703-01 17 650374 650374 G T GEMIN4 Silent p.T303T 0.18 TCGA-F4-6703-01 17 65907603 65907603 G C BPTF Missense_Mutation p.Q1201H 0.08 benign(0.02) TCGA-F4-6703-01 17 70118924 70118926 AAG - SOX9 In_Frame_Del p.K167del 0.10 TCGA-F4-6703-01 17 73818644 73818644 C T UNK Missense_Mutation p.P642S 0.14 tolerated(0.52) benign(0.015) TCGA-F4-6703-01 17 74396379 74396379 C A UBE2O Splice_Site p.X335_splice 0.14 TCGA-F4-6703-01 17 78039368 78039368 C T CCDC40 Missense_Mutation p.R509C 0.11 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 17 7850965 7850965 A G CNTROB Silent p.G690G 0.11 TCGA-F4-6703-01 17 79571661 79571661 A - NPLOC4 Frame_Shift_Del p.F249Lfs*88 0.14 TCGA-F4-6703-01 17 79827493 79827493 C T ARHGDIA Missense_Mutation p.V67I 0.17 tolerated(0.27) benign(0) TCGA-F4-6703-01 17 80196750 80196750 T C SLC16A3 Silent p.P432P 0.18 TCGA-F4-6703-01 17 80585126 80585126 T C WDR45B Missense_Mutation p.I96V 0.11 deleterious(0) benign(0.009) TCGA-F4-6703-01 17 80708379 80708379 C T FN3K Silent p.D226D 0.13 TCGA-F4-6703-01 18 29867438 29867438 G A GAREM Silent p.Y374Y 0.14 TCGA-F4-6703-01 18 43668217 43668217 G A ATP5A1 Silent p.T219T 0.12 TCGA-F4-6703-01 18 47110042 47110042 A G LIPG Missense_Mutation p.N425S 0.15 tolerated(0.57) benign(0.003) TCGA-F4-6703-01 18 56586449 56586449 C A ZNF532 Silent p.A310A 0.13 TCGA-F4-6703-01 18 59774020 59774020 A G PIGN Splice_Site p.X589_splice 0.11 TCGA-F4-6703-01 18 61002542 61002542 G A KDSR Missense_Mutation p.A276V 0.11 tolerated(0.54) benign(0.004) TCGA-F4-6703-01 18 6868225 6868225 C T ARHGAP28 Missense_Mutation p.A109V 0.09 tolerated(0.08) benign(0.004) TCGA-F4-6703-01 18 6950865 6950865 G A LAMA1 Silent p.G2771G 0.08 TCGA-F4-6703-01 18 77119425 77119425 C T ATP9B Missense_Mutation p.A992V 0.19 tolerated(0.08) benign(0.041) TCGA-F4-6703-01 19 10200361 10200361 G T C19orf66 Missense_Mutation p.R75L 0.11 tolerated(0.17) benign(0.011) TCGA-F4-6703-01 19 1047278 1047278 T C ABCA7 Silent p.A656A 0.11 TCGA-F4-6703-01 19 1127684 1127684 C T SBNO2 Silent p.T120T 0.08 TCGA-F4-6703-01 19 11470518 11470518 C T DKFZP761J1410 Missense_Mutation p.R68C 0.09 tolerated(0.17) possibly_damaging(0.781) TCGA-F4-6703-01 19 1234295 1234295 G A C19orf26 Silent p.G221G 0.09 TCGA-F4-6703-01 19 12738650 12738650 A G ZNF791 Missense_Mutation p.T103A 0.09 tolerated(0.05) benign(0.009) TCGA-F4-6703-01 19 1390973 1390973 G A NDUFS7 Missense_Mutation p.R111H 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.751) TCGA-F4-6703-01 19 14580269 14580269 C T PKN1 Missense_Mutation p.S704L 0.12 tolerated(0.16) benign(0.008) TCGA-F4-6703-01 19 15904998 15904998 C T OR10H5 Missense_Mutation p.A47V 0.20 tolerated(0.31) benign(0.008) TCGA-F4-6703-01 19 18368009 18368009 A G KIAA1683 Missense_Mutation p.M1362T 0.08 tolerated(0.87) benign(0) TCGA-F4-6703-01 19 19653357 19653357 C T CILP2 Missense_Mutation p.R256C 0.11 deleterious(0.02) possibly_damaging(0.72) TCGA-F4-6703-01 19 22952044 22952044 T C ZNF99 Missense_Mutation p.Y29C 0.15 deleterious(0) probably_damaging(0.996) TCGA-F4-6703-01 19 2338798 2338798 C T SPPL2B RNA 0.12 TCGA-F4-6703-01 19 2810443 2810443 C T THOP1 Missense_Mutation p.R533W 0.09 deleterious(0) benign(0.034) TCGA-F4-6703-01 19 3013796 3013796 G - TLE2 Frame_Shift_Del p.S249Afs*43 0.15 TCGA-F4-6703-01 19 36211525 36211525 C - KMT2B Frame_Shift_Del p.P427Hfs*48 0.13 TCGA-F4-6703-01 19 36243470 36243470 C T LIN37 Intron 0.16 TCGA-F4-6703-01 19 36257741 36257741 G A C19orf55 Missense_Mutation p.R281Q 0.09 tolerated(0.08) benign(0.22) TCGA-F4-6703-01 19 36940410 36940410 A T ZNF566 Silent p.L243L 0.11 TCGA-F4-6703-01 19 37004993 37004993 G A ZNF260 Missense_Mutation p.T383I 0.09 deleterious(0.01) probably_damaging(0.946) TCGA-F4-6703-01 19 37428121 37428121 A G ZNF568 Missense_Mutation p.E112G 0.12 tolerated(0.17) benign(0.001) TCGA-F4-6703-01 19 3833723 3833723 C T ZFR2 Silent p.P106P 0.12 TCGA-F4-6703-01 19 38958286 38958286 G A RYR1 Missense_Mutation p.R1072H 0.11 probably_damaging(0.995) TCGA-F4-6703-01 19 38980834 38980834 G A RYR1 Missense_Mutation p.G1978D 0.10 benign(0.032) TCGA-F4-6703-01 19 3905590 3905590 G A ATCAY Missense_Mutation p.E99K 0.12 deleterious(0) possibly_damaging(0.61) TCGA-F4-6703-01 19 39219737 39219737 C T ACTN4 Silent p.T840T 0.10 TCGA-F4-6703-01 19 39963481 39963481 C T SUPT5H Silent p.G689G 0.10 TCGA-F4-6703-01 19 40364015 40364015 C T FCGBP Missense_Mutation p.G4876D 0.10 probably_damaging(0.998) TCGA-F4-6703-01 19 40421474 40421474 G A FCGBP Missense_Mutation p.A816V 0.10 possibly_damaging(0.727) TCGA-F4-6703-01 19 41271081 41271081 C - SNRPA 3'UTR 0.17 TCGA-F4-6703-01 19 41700585 41700585 C T CYP2S1 Missense_Mutation p.A105V 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-F4-6703-01 19 42729703 42729703 C A ZNF526 Missense_Mutation p.T383N 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-F4-6703-01 19 4409228 4409228 G T CHAF1A Missense_Mutation p.R144S 0.15 tolerated_low_confidence(0.71) benign(0.227) TCGA-F4-6703-01 19 44831956 44831956 C T ZNF112 Missense_Mutation p.R791H 0.12 tolerated(0.58) probably_damaging(0.983) TCGA-F4-6703-01 19 44981654 44981654 A C ZNF180 Silent p.S348S 0.23 TCGA-F4-6703-01 19 45495518 45495518 T C CLPTM1 Missense_Mutation p.F528S 0.09 deleterious(0) possibly_damaging(0.882) TCGA-F4-6703-01 19 46002985 46002985 T C PPM1N Intron 0.13 TCGA-F4-6703-01 19 47858406 47858406 G A DHX34 Silent p.Q272Q 0.08 TCGA-F4-6703-01 19 50166661 50166661 T C IRF3 Silent p.L92L 0.09 TCGA-F4-6703-01 19 50753891 50753891 G A MYH14 Silent p.R592R 0.08 TCGA-F4-6703-01 19 50920340 50920340 C T POLD1 Silent p.L1036L 0.14 TCGA-F4-6703-01 19 52569152 52569152 G A ZNF841 Silent p.A661A 0.12 TCGA-F4-6703-01 19 53117273 53117273 C T ZNF83 Missense_Mutation p.C182Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-F4-6703-01 19 54578203 54578203 G A TARM1 Silent p.G78G 0.09 TCGA-F4-6703-01 19 54652440 54652440 C - CNOT3 Frame_Shift_Del p.P458Lfs*45 0.15 TCGA-F4-6703-01 19 56459619 56459619 C T NLRP8 Silent p.V117V 0.12 TCGA-F4-6703-01 19 5694898 5694898 G A LONP1 Silent p.P676P 0.16 TCGA-F4-6703-01 19 58220394 58220394 C T ZNF154 5'UTR 0.14 TCGA-F4-6703-01 19 618573 618573 G A POLRMT Missense_Mutation p.R1113C 0.10 deleterious(0.04) possibly_damaging(0.803) TCGA-F4-6703-01 19 6709737 6709737 G A C3 Silent p.G601G 0.11 TCGA-F4-6703-01 19 6731099 6731099 C A GPR108 Silent p.L486L 0.11 TCGA-F4-6703-01 19 7267909 7267909 T C INSR Splice_Site p.X34_splice 0.16 TCGA-F4-6703-01 19 7685288 7685288 C T XAB2 Silent p.R713R 0.17 TCGA-F4-6703-01 1 100547639 100547639 G A HIAT1 Silent p.P449P 0.09 TCGA-F4-6703-01 1 111060380 111060380 G A KCNA10 Missense_Mutation p.R344C 0.09 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 1 111061449 111061449 T G KCNA10 5'UTR 0.13 TCGA-F4-6703-01 1 114437751 114437751 G A AP4B1 Missense_Mutation p.T719M 0.10 tolerated(0.1) benign(0.351) TCGA-F4-6703-01 1 11982829 11982829 G A KIAA2013 Missense_Mutation p.A584V 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-F4-6703-01 1 12785283 12785283 G A AADACL3 Missense_Mutation p.V125M 0.09 deleterious(0) probably_damaging(0.999) TCGA-F4-6703-01 1 144854599 144854599 G A PDE4DIP Nonsense_Mutation p.R2291* 0.05 TCGA-F4-6703-01 1 145282114 145282114 G A NOTCH2NL 3'UTR 0.06 TCGA-F4-6703-01 1 145586641 145586641 T C NUDT17 Missense_Mutation p.K312R 0.12 tolerated_low_confidence(0.15) benign(0.001) TCGA-F4-6703-01 1 146656115 146656115 T G FMO5 3'Flank 0.10 TCGA-F4-6703-01 1 147086303 147086303 G T BCL9 Missense_Mutation p.A150S 0.14 tolerated(0.72) benign(0.202) TCGA-F4-6703-01 1 147092615 147092615 C - BCL9 Frame_Shift_Del p.Q887Rfs*79 0.13 TCGA-F4-6703-01 1 147095914 147095914 G A BCL9 Silent p.Q1145Q 0.17 TCGA-F4-6703-01 1 149762982 149762982 G A FCGR1A Missense_Mutation p.R345K 0.13 tolerated(0.2) benign(0.006) TCGA-F4-6703-01 1 150461540 150461540 T G TARS2 Missense_Mutation p.F122V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6703-01 1 150526265 150526265 G A ADAMTSL4 Silent p.T266T 0.22 TCGA-F4-6703-01 1 150549822 150549822 A - MCL1 3'UTR 0.12 TCGA-F4-6703-01 1 151491648 151491648 G A CGN Missense_Mutation p.R218H 0.08 deleterious(0.03) benign(0.271) TCGA-F4-6703-01 1 151787082 151787084 AGA - RORC In_Frame_Del p.F300del 0.15 TCGA-F4-6703-01 1 151993678 151993678 G A NBPF18P RNA 0.17 TCGA-F4-6703-01 1 152278717 152278717 C A FLG Missense_Mutation p.R2882M 0.14 possibly_damaging(0.755) TCGA-F4-6703-01 1 152282788 152282788 T C FLG Missense_Mutation p.Q1525R 0.10 benign(0.069) TCGA-F4-6703-01 1 154245941 154245941 T C HAX1 Silent p.F61F 0.11 TCGA-F4-6703-01 1 155185431 155185431 C A MTX1 3'Flank 0.08 TCGA-F4-6703-01 1 155448900 155448900 C T ASH1L Missense_Mutation p.R1254H 0.08 tolerated_low_confidence(0.13) probably_damaging(0.984) TCGA-F4-6703-01 1 1560520 1560520 G A MIB2 Missense_Mutation p.E341K 0.09 tolerated(0.1) benign(0.36) TCGA-F4-6703-01 1 160141218 160141218 G A ATP1A4 Missense_Mutation p.E557K 0.11 deleterious(0) possibly_damaging(0.823) TCGA-F4-6703-01 1 160213765 160213765 T A DCAF8 Missense_Mutation p.T12S 0.08 tolerated_low_confidence(0.48) benign(0.079) TCGA-F4-6703-01 1 160919898 160919898 G T ITLN2 Missense_Mutation p.P220H 0.12 deleterious(0) probably_damaging(0.98) TCGA-F4-6703-01 1 16256750 16256750 C T SPEN Missense_Mutation p.R1339C 0.08 possibly_damaging(0.891) TCGA-F4-6703-01 1 16528920 16528920 G A ARHGEF19 Missense_Mutation p.A686V 0.13 deleterious(0.02) probably_damaging(0.948) TCGA-F4-6703-01 1 165380187 165380187 G A RXRG Missense_Mutation p.S261L 0.13 deleterious(0.01) benign(0.039) TCGA-F4-6703-01 1 16778426 16778426 A G NECAP2 Missense_Mutation p.K195E 0.08 deleterious(0.02) possibly_damaging(0.557) TCGA-F4-6703-01 1 171535370 171535370 A G PRRC2C Splice_Site p.X2038_splice 0.12 TCGA-F4-6703-01 1 171605685 171605685 A T MYOC Missense_Mutation p.F299I 0.14 deleterious(0.02) probably_damaging(0.938) TCGA-F4-6703-01 1 171605686 171605686 A T MYOC Silent p.V298V 0.14 TCGA-F4-6703-01 1 172628521 172628521 G A FASLG Silent p.P60P 0.12 TCGA-F4-6703-01 1 173616047 173616047 C A ANKRD45 Missense_Mutation p.R145M 0.12 deleterious(0.01) possibly_damaging(0.608) TCGA-F4-6703-01 1 176845739 176845739 G A ASTN1 Missense_Mutation p.R1133C 0.12 deleterious(0) probably_damaging(0.993) TCGA-F4-6703-01 1 178820407 178820407 A G ANGPTL1 Missense_Mutation p.C445R 0.11 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 1 181701961 181701961 G A CACNA1E Silent p.R913R 0.09 TCGA-F4-6703-01 1 183106932 183106932 C T LAMC1 Silent p.D1481D 0.06 TCGA-F4-6703-01 1 183617284 183617284 A - APOBEC4 Frame_Shift_Del p.Q212Sfs*4 0.11 TCGA-F4-6703-01 1 186113786 186113786 C T HMCN1 Silent p.C4739C 0.15 TCGA-F4-6703-01 1 186276819 186276819 C T PRG4 Silent p.P656P 0.11 TCGA-F4-6703-01 1 186276822 186276822 A T PRG4 Silent p.T657T 0.09 TCGA-F4-6703-01 1 186908232 186908232 C A PLA2G4A Missense_Mutation p.P263H 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-F4-6703-01 1 196648902 196648902 C T CFH Missense_Mutation p.R257C 0.10 deleterious(0.04) possibly_damaging(0.532) TCGA-F4-6703-01 1 197059148 197059148 A G ASPM Missense_Mutation p.I3299T 0.16 deleterious(0) possibly_damaging(0.844) TCGA-F4-6703-01 1 200943903 200943903 C T KIF21B Missense_Mutation p.G1585S 0.13 deleterious(0.01) probably_damaging(1) TCGA-F4-6703-01 1 203192322 203192322 T C CHIT1 Silent p.A182A 0.08 TCGA-F4-6703-01 1 205211154 205211154 C T TMCC2 Silent p.A243A 0.20 TCGA-F4-6703-01 1 206653376 206653376 C T IKBKE Silent p.G420G 0.10 TCGA-F4-6703-01 1 212615916 212615916 C T NENF Missense_Mutation p.P63S 0.11 deleterious(0) probably_damaging(0.989) TCGA-F4-6703-01 1 213341247 213341247 C T RPS6KC1 Silent p.A294A 0.15 TCGA-F4-6703-01 1 214815034 214815034 A G CENPF Missense_Mutation p.Q1118R 0.11 benign(0.001) TCGA-F4-6703-01 1 226564854 226564854 C T PARP1 Silent p.T632T 0.10 TCGA-F4-6703-01 1 230883191 230883191 A G CAPN9 5'UTR 0.23 TCGA-F4-6703-01 1 232581315 232581315 G A SIPA1L2 Nonsense_Mutation p.R1105* 0.08 TCGA-F4-6703-01 1 23346347 23346347 C T KDM1A Silent p.G86G 0.12 TCGA-F4-6703-01 1 235969780 235969780 G A LYST Missense_Mutation p.R886W 0.07 tolerated_low_confidence(0.23) benign(0) TCGA-F4-6703-01 1 236729963 236729963 C T HEATR1 Missense_Mutation p.A1431T 0.13 tolerated(0.54) benign(0.009) TCGA-F4-6703-01 1 237947436 237947436 G A RYR2 Missense_Mutation p.A4142T 0.10 possibly_damaging(0.656) TCGA-F4-6703-01 1 243327674 243327674 T A CEP170 Missense_Mutation p.K1196N 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-F4-6703-01 1 245022133 245022135 TTC - HNRNPU In_Frame_Del p.E376del 0.10 TCGA-F4-6703-01 1 247014538 247014538 G A AHCTF1 Silent p.S1599S 0.09 TCGA-F4-6703-01 1 247492900 247492900 C T ZNF496 5'UTR 0.15 TCGA-F4-6703-01 1 248059733 248059733 C - OR2W3 Frame_Shift_Del p.L284Sfs*14 0.08 TCGA-F4-6703-01 1 31347287 31347287 G A SDC3 Missense_Mutation p.A340V 0.09 tolerated_low_confidence(0.2) unknown(0) TCGA-F4-6703-01 1 35350584 35350584 G A DLGAP3 Silent p.D665D 0.08 TCGA-F4-6703-01 1 35650014 35650015 - A SFPQ 3'UTR 0.10 TCGA-F4-6703-01 1 36358276 36358276 C T AGO1 Missense_Mutation p.R110W 0.11 deleterious(0) possibly_damaging(0.853) TCGA-F4-6703-01 1 38265332 38265332 T C MANEAL Silent p.P277P 0.16 TCGA-F4-6703-01 1 39775999 39775999 G A MACF1 Missense_Mutation p.R1005H 0.17 benign(0.002) TCGA-F4-6703-01 1 39901356 39901356 A G MACF1 Missense_Mutation p.N3909D 0.09 benign(0.173) TCGA-F4-6703-01 1 41284193 41284193 G T KCNQ4 Silent p.V183V 0.15 TCGA-F4-6703-01 1 45221850 45221850 C A KIF2C Missense_Mutation p.N306K 0.15 deleterious(0) probably_damaging(0.955) TCGA-F4-6703-01 1 45923451 45923451 G A TESK2 Missense_Mutation p.R3W 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-F4-6703-01 1 46088749 46088749 G A CCDC17 Silent p.G178G 0.18 TCGA-F4-6703-01 1 46746204 46746204 T C LRRC41 Silent p.G595G 0.14 TCGA-F4-6703-01 1 49052674 49052674 A T AGBL4 Splice_Site p.X423_splice 0.12 TCGA-F4-6703-01 1 52849169 52849169 G A ORC1 Missense_Mutation p.R646W 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-F4-6703-01 1 52991685 52991685 G T ZCCHC11 Missense_Mutation p.L90I 0.06 tolerated_low_confidence(0.05) benign(0.341) TCGA-F4-6703-01 1 53553587 53553587 G A SLC1A7 3'UTR 0.09 TCGA-F4-6703-01 1 53558239 53558239 C T SLC1A7 Missense_Mutation p.A340T 0.15 deleterious(0.01) probably_damaging(0.954) TCGA-F4-6703-01 1 53676386 53676386 G A CPT2 Missense_Mutation p.G347D 0.08 deleterious(0) probably_damaging(0.994) TCGA-F4-6703-01 1 6166720 6166720 G T CHD5 Missense_Mutation p.L1900M 0.12 deleterious(0) possibly_damaging(0.871) TCGA-F4-6703-01 1 77779541 77779541 C A AK5 Intron 0.11 TCGA-F4-6703-01 1 84668398 84668398 A G PRKACB Silent p.L272L 0.08 TCGA-F4-6703-01 1 94522178 94522178 G A ABCA4 Silent p.T787T 0.12 TCGA-F4-6703-01 1 95290069 95290069 G A SLC44A3 Silent p.S52S 0.16 TCGA-F4-6703-01 1 97278444 97278445 - T PTBP2 Frame_Shift_Ins p.P452Sfs*10 0.17 TCGA-F4-6703-01 20 13899696 13899696 C A SEL1L2 Missense_Mutation p.Q119H 0.07 tolerated(0.06) probably_damaging(0.927) TCGA-F4-6703-01 20 1426391 1426391 G A NSFL1C Silent p.D292D 0.12 TCGA-F4-6703-01 20 18125916 18125916 A T CSRP2BP Missense_Mutation p.N100I 0.15 tolerated(0.36) benign(0.033) TCGA-F4-6703-01 20 30142600 30142600 C T HM13 Missense_Mutation p.A259V 0.16 deleterious(0) benign(0.197) TCGA-F4-6703-01 20 31025035 31025035 C T ASXL1 Missense_Mutation p.A1507V 0.14 deleterious(0.01) possibly_damaging(0.764) TCGA-F4-6703-01 20 31699219 31699219 G C BPIFB4 Splice_Site p.X608_splice 0.11 TCGA-F4-6703-01 20 31998060 31998060 C T SNTA1 Missense_Mutation p.R373H 0.16 deleterious(0.04) benign(0.037) TCGA-F4-6703-01 20 33169392 33169392 G T PIGU Silent p.L337L 0.15 TCGA-F4-6703-01 20 33329665 33329665 C T NCOA6 Silent p.S1465S 0.08 TCGA-F4-6703-01 20 33632506 33632506 G A TRPC4AP Nonsense_Mutation p.R223* 0.11 TCGA-F4-6703-01 20 35125179 35125179 A G DLGAP4 Missense_Mutation p.I574V 0.08 deleterious(0) probably_damaging(0.992) TCGA-F4-6703-01 20 44037473 44037473 A C DBNDD2 Missense_Mutation p.N160H 0.11 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 20 44698884 44698884 G A NCOA5 Silent p.Y110Y 0.14 TCGA-F4-6703-01 20 47865667 47865667 A G ZNFX1 Silent p.C1298C 0.12 TCGA-F4-6703-01 20 49225257 49225257 G A FAM65C Missense_Mutation p.R231C 0.16 deleterious(0) probably_damaging(0.994) TCGA-F4-6703-01 20 50418881 50418881 G A SALL4 Missense_Mutation p.P23S 0.16 tolerated(0.13) benign(0.075) TCGA-F4-6703-01 20 50701739 50701739 T C ZFP64 Missense_Mutation p.H432R 0.11 deleterious(0) probably_damaging(0.997) TCGA-F4-6703-01 20 55841045 55841045 C T BMP7 Missense_Mutation p.R45H 0.28 deleterious(0.04) probably_damaging(0.976) TCGA-F4-6703-01 20 55982733 55982733 C A RBM38 Missense_Mutation p.P184Q 0.12 tolerated(0.16) benign(0.415) TCGA-F4-6703-01 20 60791116 60791116 G A HRH3 Silent p.C428C 0.13 TCGA-F4-6703-01 20 61917460 61917460 C - ARFGAP1 Intron 0.13 TCGA-F4-6703-01 20 61947964 61947964 G A COL20A1 Missense_Mutation p.V862M 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-F4-6703-01 20 62076080 62076080 T A KCNQ2 Missense_Mutation p.M208L 0.12 deleterious(0.02) benign(0.06) TCGA-F4-6703-01 20 62195156 62195156 C T HELZ2 Silent p.S1673S 0.12 TCGA-F4-6703-01 20 62366599 62366599 C A ZGPAT Silent p.T380T 0.15 TCGA-F4-6703-01 20 9561495 9561495 C T PAK7 Missense_Mutation p.R96H 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-F4-6703-01 21 22707873 22707873 C T NCAM2 Silent p.S262S 0.21 TCGA-F4-6703-01 21 34640758 34640758 A G AP000295.9 Missense_Mutation p.I165V 0.13 tolerated(0.25) benign(0.118) TCGA-F4-6703-01 21 45978626 45978626 G C KRTAP10-3 5'UTR 0.14 TCGA-F4-6703-01 21 46916425 46916425 C T COL18A1 Silent p.G1020G 0.17 TCGA-F4-6703-01 21 47734699 47734699 G - C21orf58 Frame_Shift_Del p.T181Rfs*41 0.27 TCGA-F4-6703-01 22 19868186 19868186 G A TXNRD2 Missense_Mutation p.R381W 0.16 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 22 20761115 20761115 G A ZNF74 Missense_Mutation p.V598M 0.12 tolerated_low_confidence(0.38) benign(0.016) TCGA-F4-6703-01 22 22313018 22313018 C T TOP3B Silent p.T651T 0.18 TCGA-F4-6703-01 22 22385671 22385671 G A IGLV4-69 Missense_Mutation p.A54T 0.10 tolerated(0.39) benign(0.009) TCGA-F4-6703-01 22 24037277 24037277 T G RGL4 Intron 0.18 TCGA-F4-6703-01 22 24225987 24225987 G A SLC2A11 Missense_Mutation p.R345H 0.12 deleterious(0.01) probably_damaging(0.978) TCGA-F4-6703-01 22 26164309 26164309 C - MYO18B Frame_Shift_Del p.F144Sfs*5 0.11 TCGA-F4-6703-01 22 26839069 26839069 C T ASPHD2 Missense_Mutation p.A336V 0.17 tolerated(0.08) benign(0.004) TCGA-F4-6703-01 22 28379058 28379058 C A TTC28 Silent p.A2199A 0.14 TCGA-F4-6703-01 22 31731812 31731812 C T PATZ1 Missense_Mutation p.R458H 0.12 deleterious(0.04) benign(0) TCGA-F4-6703-01 22 33712098 33712098 G A LARGE Missense_Mutation p.T475I 0.09 deleterious(0) probably_damaging(0.95) TCGA-F4-6703-01 22 35734720 35734720 C - TOM1 Frame_Shift_Del p.Q390Kfs*164 0.21 TCGA-F4-6703-01 22 37771074 37771074 G A ELFN2 Silent p.D167D 0.12 TCGA-F4-6703-01 22 39795780 39795780 C T TAB1 5'UTR 0.15 TCGA-F4-6703-01 22 39884730 39884730 C T MGAT3 Missense_Mutation p.R460C 0.11 deleterious(0) probably_damaging(0.93) TCGA-F4-6703-01 22 41745203 41745203 G A ZC3H7B Missense_Mutation p.V616M 0.12 deleterious(0.01) possibly_damaging(0.451) TCGA-F4-6703-01 22 43529183 43529183 C T MCAT Missense_Mutation p.E347K 0.09 deleterious(0) probably_damaging(0.998) TCGA-F4-6703-01 22 46748195 46748195 T C TRMU Missense_Mutation p.I247T 0.11 deleterious(0) possibly_damaging(0.555) TCGA-F4-6703-01 22 48940562 48940562 G A CTA-299D3.8 Missense_Mutation p.P83S 0.10 possibly_damaging(0.81) TCGA-F4-6703-01 22 50885797 50885797 G T SBF1 Missense_Mutation p.P1846H 0.11 deleterious(0) probably_damaging(0.967) TCGA-F4-6703-01 2 102988513 102988513 T A IL18R1 Missense_Mutation p.F135I 0.09 tolerated(0.33) benign(0.008) TCGA-F4-6703-01 2 105885902 105885902 C T TGFBRAP1 Missense_Mutation p.A745T 0.12 tolerated(0.19) benign(0.022) TCGA-F4-6703-01 2 111399703 111399704 - C BUB1 Frame_Shift_Ins p.V819Gfs*61 0.09 TCGA-F4-6703-01 2 118865952 118865952 T C INSIG2 3'UTR 0.12 TCGA-F4-6703-01 2 128482501 128482501 T G WDR33 Missense_Mutation p.S349R 0.14 deleterious(0) unknown(0) TCGA-F4-6703-01 2 131976344 131976344 C T POTEE Silent p.Y123Y 0.10 TCGA-F4-6703-01 2 144764929 144764929 C T GTDC1 Missense_Mutation p.R232Q 0.11 tolerated_low_confidence(1) benign(0) TCGA-F4-6703-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.20 TCGA-F4-6703-01 2 1657549 1657549 C T PXDN Missense_Mutation p.R652H 0.13 tolerated(0.21) benign(0.013) TCGA-F4-6703-01 2 170063491 170063491 A G LRP2 Missense_Mutation p.Y2247H 0.12 benign(0.072) TCGA-F4-6703-01 2 170134423 170134424 - C LRP2 Frame_Shift_Ins p.E535Gfs*3 0.12 TCGA-F4-6703-01 2 171259367 171259367 A G MYO3B Silent p.G713G 0.17 TCGA-F4-6703-01 2 172823405 172823405 G A HAT1 Missense_Mutation p.G253D 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-F4-6703-01 2 173351772 173351772 T C ITGA6 Missense_Mutation p.C626R 0.12 deleterious(0) probably_damaging(0.993) TCGA-F4-6703-01 2 179396104 179396104 T C TTN Missense_Mutation p.R35080G 0.12 TCGA-F4-6703-01 2 179428091 179428091 C T TTN Missense_Mutation p.A27590T 0.11 TCGA-F4-6703-01 2 179547981 179547981 T - TTN Frame_Shift_Del p.V10949Yfs*16 0.13 TCGA-F4-6703-01 2 179569119 179569119 C T TTN Missense_Mutation p.R9993Q 0.15 TCGA-F4-6703-01 2 179634469 179634469 C T TTN Missense_Mutation p.D2947N 0.15 TCGA-F4-6703-01 2 187626639 187626639 C T FAM171B Missense_Mutation p.R524C 0.15 tolerated(0.18) benign(0.002) TCGA-F4-6703-01 2 190682810 190682810 A - PMS1 Frame_Shift_Del p.K164Nfs*6 0.08 TCGA-F4-6703-01 2 191785879 191785880 - T GLS Frame_Shift_Ins p.L362Ffs*3 0.08 TCGA-F4-6703-01 2 191819546 191819546 T G GLS Splice_Site p.X618_splice 0.12 TCGA-F4-6703-01 2 192711581 192711581 G A SDPR Missense_Mutation p.S24L 0.10 tolerated(0.06) benign(0.038) TCGA-F4-6703-01 2 209190226 209190226 G A PIKFYVE Silent p.G897G 0.11 TCGA-F4-6703-01 2 210658537 210658537 A C UNC80 Missense_Mutation p.S298R 0.14 possibly_damaging(0.785) TCGA-F4-6703-01 2 215880357 215880357 A C ABCA12 Missense_Mutation p.C605G 0.16 deleterious(0) probably_damaging(0.999) TCGA-F4-6703-01 2 220074006 220074006 C T ZFAND2B Missense_Mutation p.P251L 0.09 tolerated(0.16) benign(0.099) TCGA-F4-6703-01 2 230670490 230670490 C T TRIP12 Missense_Mutation p.R794H 0.12 deleterious(0.02) benign(0.008) TCGA-F4-6703-01 2 233243555 233243555 C A ALPP Missense_Mutation p.L15M 0.10 tolerated(0.19) unknown(0) TCGA-F4-6703-01 2 233633472 233633472 C T KCNJ13 Missense_Mutation p.R171H 0.11 deleterious(0.01) probably_damaging(0.965) TCGA-F4-6703-01 2 234750450 234750450 G A HJURP Missense_Mutation p.P326S 0.11 tolerated(0.13) benign(0.378) TCGA-F4-6703-01 2 237074562 237074562 G A GBX2 Missense_Mutation p.P348S 0.11 deleterious(0) probably_damaging(0.996) TCGA-F4-6703-01 2 238736077 238736077 C T RBM44 Missense_Mutation p.A845V 0.09 tolerated(0.14) probably_damaging(0.999) TCGA-F4-6703-01 2 238990731 238990731 C T SCLY Missense_Mutation p.R228W 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-F4-6703-01 2 238990797 238990797 C T SCLY Missense_Mutation p.R250C 0.15 deleterious(0.01) possibly_damaging(0.605) TCGA-F4-6703-01 2 25990472 25990472 C A ASXL2 Missense_Mutation p.R252I 0.19 deleterious(0) probably_damaging(0.946) TCGA-F4-6703-01 2 27302089 27302089 A G EMILIN1 Silent p.P52P 0.14 TCGA-F4-6703-01 2 27430433 27430433 T C SLC5A6 Missense_Mutation p.Y29C 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 2 30379542 30379542 A G YPEL5 Missense_Mutation p.I9V 0.08 tolerated(0.41) benign(0.008) TCGA-F4-6703-01 2 3481488 3481488 A - TRAPPC12 Frame_Shift_Del p.K601Sfs*9 0.09 TCGA-F4-6703-01 2 39187364 39187364 T C ARHGEF33 Missense_Mutation p.F640L 0.12 tolerated(0.35) probably_damaging(0.994) TCGA-F4-6703-01 2 39200878 39200878 A - ARHGEF33 Frame_Shift_Del p.T838Lfs*46 0.14 TCGA-F4-6703-01 2 39285881 39285881 G T SOS1 Missense_Mutation p.A93D 0.09 deleterious(0) probably_damaging(0.999) TCGA-F4-6703-01 2 44053628 44053628 G T ABCG5 Missense_Mutation p.L223M 0.13 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 2 48925807 48925807 G A LHCGR Silent p.A271A 0.11 TCGA-F4-6703-01 2 55764680 55764680 A T CCDC104 Missense_Mutation p.N200I 0.13 tolerated(0.11) benign(0.002) TCGA-F4-6703-01 2 63831834 63831834 C T MDH1 Missense_Mutation p.A186V 0.15 deleterious(0.02) benign(0.242) TCGA-F4-6703-01 2 64780380 64780380 A G AFTPH Missense_Mutation p.Q591R 0.14 deleterious(0) benign(0.343) TCGA-F4-6703-01 2 65298654 65298656 ACT - CEP68 In_Frame_Del p.T142del 0.13 TCGA-F4-6703-01 2 70485313 70485313 C T PCYOX1 Missense_Mutation p.A6V 0.16 tolerated_low_confidence(0.29) benign(0) TCGA-F4-6703-01 2 84926842 84926842 T C DNAH6 Missense_Mutation p.I2601T 0.15 deleterious(0) probably_damaging(0.998) TCGA-F4-6703-01 2 85097694 85097694 G A TRABD2A Silent p.G108G 0.13 TCGA-F4-6703-01 2 88879098 88879098 A - EIF2AK3 Frame_Shift_Del p.F608Lfs*7 0.12 TCGA-F4-6703-01 2 8998794 8998794 T G MBOAT2 3'UTR 0.09 TCGA-F4-6703-01 2 97369046 97369046 C A LMAN2L 3'Flank 0.11 TCGA-F4-6703-01 2 97427703 97427703 C T CNNM4 Missense_Mutation p.L323F 0.11 deleterious(0.03) possibly_damaging(0.803) TCGA-F4-6703-01 2 97849333 97849333 G C ANKRD36 Missense_Mutation p.K627N 0.11 deleterious_low_confidence(0.05) probably_damaging(0.992) TCGA-F4-6703-01 3 111261127 111261127 A G CD96 Missense_Mutation p.Y11C 0.17 tolerated(0.17) benign(0.011) TCGA-F4-6703-01 3 112358726 112358726 G T CCDC80 Missense_Mutation p.F9L 0.11 tolerated_low_confidence(0.82) benign(0) TCGA-F4-6703-01 3 120469687 120469687 T C GTF2E1 Silent p.Y96Y 0.16 TCGA-F4-6703-01 3 122215315 122215315 A C KPNA1 Missense_Mutation p.L33R 0.10 deleterious(0) possibly_damaging(0.866) TCGA-F4-6703-01 3 123418938 123418938 G - MYLK Frame_Shift_Del p.P1126Qfs*8 0.09 TCGA-F4-6703-01 3 129034669 129034669 C T H1FX Missense_Mutation p.G26D 0.08 tolerated(0.1) benign(0.116) TCGA-F4-6703-01 3 139092574 139092574 G A COPB2 Silent p.C276C 0.10 TCGA-F4-6703-01 3 140695148 140695148 T - SLC25A36 Frame_Shift_Del p.Q266Rfs*19 0.14 TCGA-F4-6703-01 3 160156618 160156618 A C TRIM59 Silent p.G118G 0.16 TCGA-F4-6703-01 3 169486095 169486095 C A ACTRT3 Nonsense_Mutation p.E82* 0.10 TCGA-F4-6703-01 3 174951906 174951906 G A NAALADL2 Missense_Mutation p.G244D 0.13 deleterious(0.02) probably_damaging(0.93) TCGA-F4-6703-01 3 195480011 195480011 C A MUC4 Missense_Mutation p.G5140V 0.14 benign(0.429) TCGA-F4-6703-01 3 19554558 19554558 T C KCNH8 Missense_Mutation p.S726P 0.12 tolerated(0.33) benign(0.004) TCGA-F4-6703-01 3 195966475 195966477 CTC - PCYT1A In_Frame_Del p.E280del 0.14 TCGA-F4-6703-01 3 32932710 32932710 A G TRIM71 Missense_Mutation p.K672E 0.12 deleterious(0) probably_damaging(0.994) TCGA-F4-6703-01 3 33216568 33216568 T C SUSD5 Splice_Site p.X137_splice 0.13 TCGA-F4-6703-01 3 37067499 37067499 G A MLH1 Splice_Site p.X470_splice 0.23 TCGA-F4-6703-01 3 40469005 40469005 C G ENTPD3 3'UTR 0.12 TCGA-F4-6703-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.20 deleterious(0) possibly_damaging(0.844) TCGA-F4-6703-01 3 41267224 41267224 A - CTNNB1 Frame_Shift_Del p.M271Wfs*5 0.08 TCGA-F4-6703-01 3 44409097 44409097 C T TCAIM Missense_Mutation p.P157S 0.17 tolerated(0.88) benign(0.001) TCGA-F4-6703-01 3 44816854 44816854 G A KIF15 Silent p.T57T 0.14 TCGA-F4-6703-01 3 4681075 4681075 C T ITPR1 Missense_Mutation p.A96V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6703-01 3 47032979 47032979 G A NBEAL2 Silent p.P242P 0.12 TCGA-F4-6703-01 3 49831366 49831366 C A CDHR4 Silent p.R451R 0.24 TCGA-F4-6703-01 3 49842098 49842098 G A FAM212A Missense_Mutation p.R181H 0.10 deleterious(0) probably_damaging(0.998) TCGA-F4-6703-01 3 81548302 81548302 A - GBE1 Frame_Shift_Del p.S671Lfs*36 0.15 TCGA-F4-6703-01 3 93733710 93733710 G T STX19 Missense_Mutation p.S135Y 0.12 tolerated(0.08) benign(0.025) TCGA-F4-6703-01 3 97806597 97806597 C T OR5AC2 Missense_Mutation p.P194L 0.10 deleterious(0) probably_damaging(0.939) TCGA-F4-6703-01 4 103527740 103527740 C T NFKB1 Missense_Mutation p.R614C 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-F4-6703-01 4 119652520 119652520 A T SEC24D Missense_Mutation p.I940N 0.09 deleterious(0) probably_damaging(0.922) TCGA-F4-6703-01 4 122774122 122774122 G A BBS7 Nonsense_Mutation p.R280* 0.10 TCGA-F4-6703-01 4 140309191 140309191 A G NAA15 Missense_Mutation p.N852D 0.10 tolerated(0.49) benign(0.146) TCGA-F4-6703-01 4 142653933 142653934 - A IL15 Frame_Shift_Ins p.N143Kfs*3 0.10 TCGA-F4-6703-01 4 151114365 151114365 C T DCLK2 Nonsense_Mutation p.Q278* 0.13 TCGA-F4-6703-01 4 154236677 154236677 G - TRIM2 Frame_Shift_Del p.V519* 0.15 TCGA-F4-6703-01 4 155410647 155410647 G T DCHS2 Missense_Mutation p.L621I 0.10 deleterious(0.02) probably_damaging(1) TCGA-F4-6703-01 4 160264476 160264476 A G RAPGEF2 Silent p.L897L 0.12 TCGA-F4-6703-01 4 1804761 1804761 T - FGFR3 Frame_Shift_Del p.W352Gfs*2 0.08 TCGA-F4-6703-01 4 1959740 1959740 C - WHSC1 Frame_Shift_Del p.P989Hfs*8 0.11 TCGA-F4-6703-01 4 23833241 23833241 G A PPARGC1A Missense_Mutation p.A123V 0.12 tolerated(0.2) benign(0.256) TCGA-F4-6703-01 4 3257499 3257499 T C MSANTD1 Missense_Mutation p.L215P 0.09 deleterious(0) possibly_damaging(0.629) TCGA-F4-6703-01 4 37903775 37903776 - T TBC1D1 Frame_Shift_Ins p.G22Wfs*25 0.10 TCGA-F4-6703-01 4 40115082 40115082 C T N4BP2 Missense_Mutation p.R540W 0.07 deleterious(0) probably_damaging(0.976) TCGA-F4-6703-01 4 42626647 42626647 A G ATP8A1 Missense_Mutation p.I90T 0.09 deleterious(0) probably_damaging(0.977) TCGA-F4-6703-01 4 5624514 5624514 G T EVC2 Missense_Mutation p.L751M 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-F4-6703-01 4 6611771 6611771 C T MAN2B2 Silent p.I751I 0.17 TCGA-F4-6703-01 4 66242743 66242743 C A EPHA5 Missense_Mutation p.C610F 0.15 tolerated(0.4) benign(0.005) TCGA-F4-6703-01 4 71508696 71508696 A G ENAM Missense_Mutation p.K518R 0.11 deleterious(0.03) probably_damaging(0.955) TCGA-F4-6703-01 4 88420690 88420690 T C SPARCL1 Missense_Mutation p.T13A 0.13 tolerated(0.36) benign(0.006) TCGA-F4-6703-01 5 112860681 112860681 G A YTHDC2 Silent p.K94K 0.17 TCGA-F4-6703-01 5 122724287 122724287 T A CEP120 Silent p.V423V 0.12 TCGA-F4-6703-01 5 134099626 134099626 G A DDX46 Missense_Mutation p.R17H 0.09 tolerated_low_confidence(0.35) unknown(0) TCGA-F4-6703-01 5 134705178 134705178 G - H2AFY Frame_Shift_Del p.P132Qfs*66 0.12 TCGA-F4-6703-01 5 137734082 137734082 G A KDM3B Splice_Site p.X1016_splice 0.16 TCGA-F4-6703-01 5 140176640 140176640 C T PCDHA2 Silent p.N697N 0.12 TCGA-F4-6703-01 5 140207888 140207888 G A PCDHA6 Missense_Mutation p.R71H 0.16 tolerated_low_confidence(0.24) benign(0.014) TCGA-F4-6703-01 5 145894692 145894693 - T GPR151 Frame_Shift_Ins p.P329Tfs*20 0.11 TCGA-F4-6703-01 5 150897275 150897275 G A FAT2 Missense_Mutation p.A3790V 0.07 benign(0.023) TCGA-F4-6703-01 5 151784712 151784712 C G NMUR2 5'UTR 0.22 TCGA-F4-6703-01 5 159830449 159830449 C T SLU7 Missense_Mutation p.R535H 0.10 tolerated(0.21) benign(0.004) TCGA-F4-6703-01 5 160061430 160061430 G T ATP10B Missense_Mutation p.L438M 0.08 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 5 161128735 161128735 T C GABRA6 Missense_Mutation p.Y440H 0.11 deleterious(0) probably_damaging(0.997) TCGA-F4-6703-01 5 167645463 167645463 A - TENM2 Frame_Shift_Del p.N1524Tfs*20 0.10 TCGA-F4-6703-01 5 173317687 173317687 C T CPEB4 Silent p.H317H 0.09 TCGA-F4-6703-01 5 174156219 174156219 G A MSX2 Missense_Mutation p.R146H 0.10 deleterious(0) probably_damaging(0.999) TCGA-F4-6703-01 5 176523645 176523645 G - FGFR4 Frame_Shift_Del p.G687Afs*35 0.15 TCGA-F4-6703-01 5 176860543 176860543 G A GRK6 Missense_Mutation p.A202T 0.11 deleterious(0) probably_damaging(0.999) TCGA-F4-6703-01 5 178417675 178417676 - C GRM6 Frame_Shift_Ins p.A311Sfs*30 0.14 TCGA-F4-6703-01 5 24488084 24488085 - T CDH10 Frame_Shift_Ins p.L686Afs*22 0.09 TCGA-F4-6703-01 5 31322961 31322961 G A CDH6 Missense_Mutation p.R640Q 0.22 tolerated(0.06) probably_damaging(0.992) TCGA-F4-6703-01 5 31410867 31410867 G A DROSHA Missense_Mutation p.A1218V 0.12 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 5 31983406 31983406 C T PDZD2 Nonsense_Mutation p.R208* 0.10 TCGA-F4-6703-01 5 33937442 33937442 C T RXFP3 Silent p.G199G 0.12 TCGA-F4-6703-01 5 33937495 33937496 TG - RXFP3 Frame_Shift_Del p.W220Dfs*275 0.09 TCGA-F4-6703-01 5 40852609 40852609 G A CARD6 Missense_Mutation p.R392H 0.10 deleterious(0.03) possibly_damaging(0.714) TCGA-F4-6703-01 5 55412525 55412525 C A ANKRD55 Silent p.R294R 0.10 TCGA-F4-6703-01 5 74056727 74056727 C A GFM2 Missense_Mutation p.G50C 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-F4-6703-01 5 78260390 78260390 C T ARSB Missense_Mutation p.R180H 0.09 tolerated(0.24) benign(0.02) TCGA-F4-6703-01 6 105526555 105526555 G A LIN28B Missense_Mutation p.R217Q 0.18 tolerated_low_confidence(0.12) benign(0.016) TCGA-F4-6703-01 6 107113732 107113732 C T QRSL1 Missense_Mutation p.A481V 0.09 tolerated(0.56) possibly_damaging(0.612) TCGA-F4-6703-01 6 109802525 109802525 T - ZBTB24 Frame_Shift_Del p.D236Mfs*74 0.12 TCGA-F4-6703-01 6 111697607 111697607 G A REV3L Missense_Mutation p.P651S 0.09 tolerated_low_confidence(0.07) benign(0.031) TCGA-F4-6703-01 6 114264664 114264664 G A HDAC2 Missense_Mutation p.A410V 0.21 tolerated(0.32) benign(0.006) TCGA-F4-6703-01 6 117679081 117679081 T - ROS1 Frame_Shift_Del p.N1247Mfs*14 0.09 TCGA-F4-6703-01 6 118880602 118880602 T C PLN 3'UTR 0.08 TCGA-F4-6703-01 6 13286393 13286393 G T TBC1D7 Intron 0.10 TCGA-F4-6703-01 6 135290403 135290403 G A HBS1L Missense_Mutation p.T624M 0.14 deleterious(0) possibly_damaging(0.507) TCGA-F4-6703-01 6 144812147 144812147 G A UTRN Missense_Mutation p.R1449H 0.11 deleterious(0) probably_damaging(0.999) TCGA-F4-6703-01 6 145948726 145948726 G A EPM2A Silent p.T274T 0.16 TCGA-F4-6703-01 6 155565917 155565920 AGTA - TIAM2 Splice_Site p.X1181_splice 0.13 TCGA-F4-6703-01 6 157405960 157405960 C G ARID1B Silent p.G734G 0.10 TCGA-F4-6703-01 6 161470751 161470751 G A MAP3K4 Missense_Mutation p.D483N 0.19 tolerated(0.28) benign(0.003) TCGA-F4-6703-01 6 17626045 17626045 A C NUP153 Missense_Mutation p.S1299A 0.08 tolerated(0.68) benign(0.011) TCGA-F4-6703-01 6 24687764 24687764 C T ACOT13 Intron 0.09 TCGA-F4-6703-01 6 25830837 25830837 T C SLC17A1 Splice_Site 0.13 TCGA-F4-6703-01 6 28358666 28358666 T - ZSCAN12 Frame_Shift_Del p.K467Nfs*109 0.14 TCGA-F4-6703-01 6 29556735 29556735 C T OR2H2 3'UTR 0.10 TCGA-F4-6703-01 6 30570240 30570240 C T PPP1R10 Missense_Mutation p.R729H 0.11 tolerated_low_confidence(0.24) unknown(0) TCGA-F4-6703-01 6 31324721 31324721 C T HLA-B Missense_Mutation p.M29I 0.15 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-F4-6703-01 6 32037422 32037422 G A TNXB Missense_Mutation p.P1832L 0.13 benign(0.018) TCGA-F4-6703-01 6 38775438 38775438 A - DNAH8 Frame_Shift_Del p.A853Lfs*9 0.08 TCGA-F4-6703-01 6 38851218 38851218 C A DNAH8 Missense_Mutation p.P2491T 0.12 probably_damaging(1) TCGA-F4-6703-01 6 42196189 42196189 A T TRERF1 Missense_Mutation p.V1166D 0.13 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-F4-6703-01 6 43164381 43164381 A G CUL9 Splice_Site p.X862_splice 0.09 TCGA-F4-6703-01 6 43250480 43250480 C - TTBK1 Frame_Shift_Del p.P669Hfs*4 0.09 TCGA-F4-6703-01 6 43643294 43643294 T C MRPS18A Missense_Mutation p.T105A 0.13 deleterious(0.02) probably_damaging(0.973) TCGA-F4-6703-01 6 44081903 44081903 G A MRPL14 Nonsense_Mutation p.R39* 0.26 TCGA-F4-6703-01 6 46849827 46849827 T C GPR116 Silent p.G210G 0.11 TCGA-F4-6703-01 6 51893027 51893027 C T PKHD1 Missense_Mutation p.A1163T 0.16 tolerated(0.65) benign(0) TCGA-F4-6703-01 6 56422222 56422222 C A DST Missense_Mutation p.E2222D 0.06 possibly_damaging(0.579) TCGA-F4-6703-01 6 56463275 56463275 T - DST Frame_Shift_Del p.K1353Rfs*2 0.09 TCGA-F4-6703-01 6 56483956 56483956 G A DST Intron 0.11 TCGA-F4-6703-01 6 75912504 75912504 C T COL12A1 Missense_Mutation p.R2Q 0.11 benign(0) TCGA-F4-6703-01 6 80383502 80383502 G A SH3BGRL2 Missense_Mutation p.D73N 0.12 tolerated(0.1) benign(0.098) TCGA-F4-6703-01 6 83754213 83754213 C A UBE3D Missense_Mutation p.W177C 0.13 tolerated(0.2) benign(0.004) TCGA-F4-6703-01 6 99374412 99374412 G A FBXL4 Silent p.V151V 0.13 TCGA-F4-6703-01 7 100364256 100364256 C T ZAN Nonsense_Mutation p.Q1527* 0.08 TCGA-F4-6703-01 7 100679779 100679779 T C MUC17 Silent p.S1694S 0.12 TCGA-F4-6703-01 7 105615333 105615333 T C CDHR3 Silent p.N30N 0.14 TCGA-F4-6703-01 7 107414363 107414363 A G SLC26A3 Splice_Site p.X669_splice 0.19 TCGA-F4-6703-01 7 113519436 113519436 C T PPP1R3A Missense_Mutation p.A571T 0.08 tolerated(1) benign(0) TCGA-F4-6703-01 7 119914901 119914901 G T KCND2 Missense_Mutation p.R72M 0.19 deleterious(0) probably_damaging(0.975) TCGA-F4-6703-01 7 129666004 129666004 G A ZC3HC1 Missense_Mutation p.A257V 0.08 deleterious(0.04) benign(0.284) TCGA-F4-6703-01 7 134678336 134678336 A G AGBL3 Missense_Mutation p.R73G 0.14 deleterious(0) possibly_damaging(0.894) TCGA-F4-6703-01 7 136938377 136938377 T - PTN Frame_Shift_Del p.V42* 0.23 TCGA-F4-6703-01 7 138969219 138969219 G - UBN2 Frame_Shift_Del p.G1191Efs*28 0.09 TCGA-F4-6703-01 7 140154431 140154431 G A MKRN1 Silent p.G445G 0.13 TCGA-F4-6703-01 7 143748219 143748219 C T OR2A5 Missense_Mutation p.S242F 0.15 deleterious(0.03) benign(0.443) TCGA-F4-6703-01 7 148112640 148112640 G A CNTNAP2 Missense_Mutation p.A1310T 0.27 tolerated(0.05) probably_damaging(0.921) TCGA-F4-6703-01 7 150721218 150721218 G - ATG9B Frame_Shift_Del p.P98Qfs*8 0.12 TCGA-F4-6703-01 7 20739510 20739510 C T ABCB5 Silent p.F739F 0.08 TCGA-F4-6703-01 7 23212577 23212577 C G KLHL7 Missense_Mutation p.L464V 0.08 tolerated(0.63) benign(0.008) TCGA-F4-6703-01 7 27831732 27831732 C T TAX1BP1 Silent p.N382N 0.16 TCGA-F4-6703-01 7 29924039 29924039 C T WIPF3 Missense_Mutation p.A310V 0.10 tolerated_low_confidence(0.19) unknown(0) TCGA-F4-6703-01 7 32612947 32612947 C T AVL9 Missense_Mutation p.T496M 0.15 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 7 39247167 39247167 G T POU6F2 Silent p.V153V 0.16 TCGA-F4-6703-01 7 42005466 42005466 T C GLI3 Missense_Mutation p.I1069V 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-F4-6703-01 7 50468218 50468218 G A IKZF1 Missense_Mutation p.G443S 0.15 deleterious(0) probably_damaging(0.997) TCGA-F4-6703-01 7 63537703 63537703 C T ZNF727 Silent p.N92N 0.11 TCGA-F4-6703-01 7 65150669 65150669 C T INTS4L2 RNA 0.10 TCGA-F4-6703-01 7 73480277 73480277 C T ELN Missense_Mutation p.A679V 0.09 unknown(0) TCGA-F4-6703-01 7 8167510 8167510 C T ICA1 Silent p.S441S 0.09 TCGA-F4-6703-01 7 84685100 84685100 C T SEMA3D Missense_Mutation p.R265H 0.21 deleterious(0.04) probably_damaging(0.962) TCGA-F4-6703-01 7 86493764 86493764 A G GRM3 3'UTR 0.12 TCGA-F4-6703-01 7 90895895 90895895 G A FZD1 Missense_Mutation p.R567H 0.10 tolerated(0.29) benign(0.052) TCGA-F4-6703-01 7 98446238 98446238 G T TMEM130 Silent p.R363R 0.12 TCGA-F4-6703-01 7 98555702 98555702 C T TRRAP Silent p.R2103R 0.12 TCGA-F4-6703-01 7 99145793 99145793 C A FAM200A Missense_Mutation p.A80S 0.12 deleterious(0.04) benign(0.077) TCGA-F4-6703-01 7 99227391 99227391 C A ZSCAN25 Nonsense_Mutation p.C461* 0.12 TCGA-F4-6703-01 7 99768962 99768962 G A GPC2 Missense_Mutation p.R470C 0.16 deleterious(0.04) possibly_damaging(0.873) TCGA-F4-6703-01 8 100832175 100832175 G A VPS13B Missense_Mutation p.S2965N 0.09 deleterious(0.05) benign(0.213) TCGA-F4-6703-01 8 101730498 101730498 A C PABPC1 Silent p.A68A 0.10 TCGA-F4-6703-01 8 10467561 10467561 C T RP1L1 Silent p.Q1349Q 0.09 TCGA-F4-6703-01 8 10623133 10623133 C T PINX1 Silent p.A255A 0.16 TCGA-F4-6703-01 8 125555399 125555399 C T NDUFB9 Missense_Mutation p.A58V 0.20 tolerated(0.68) benign(0.001) TCGA-F4-6703-01 8 12957546 12957546 G A DLC1 Missense_Mutation p.A767V 0.13 tolerated(0.12) benign(0.136) TCGA-F4-6703-01 8 139164641 139164641 T A FAM135B Missense_Mutation p.S693C 0.12 deleterious(0) probably_damaging(0.999) TCGA-F4-6703-01 8 144995093 144995093 G A PLEC Nonsense_Mutation p.Q3103* 0.10 TCGA-F4-6703-01 8 145059484 145059484 A G PARP10 Missense_Mutation p.V229A 0.13 deleterious(0) possibly_damaging(0.739) TCGA-F4-6703-01 8 17417899 17417899 C T SLC7A2 Missense_Mutation p.S494L 0.11 tolerated(0.28) benign(0.003) TCGA-F4-6703-01 8 22106058 22106058 A G POLR3D Missense_Mutation p.H184R 0.08 tolerated(0.41) benign(0.221) TCGA-F4-6703-01 8 25249452 25249452 C T DOCK5 Missense_Mutation p.R1466W 0.10 deleterious(0.01) probably_damaging(1) TCGA-F4-6703-01 8 25261238 25261238 T C DOCK5 Silent p.D1697D 0.10 TCGA-F4-6703-01 8 25702132 25702132 G - EBF2 Frame_Shift_Del p.P574Rfs*20 0.12 TCGA-F4-6703-01 8 26237096 26237096 G A BNIP3L 5'Flank 0.13 TCGA-F4-6703-01 8 26366572 26366572 T G PNMA2 5'UTR 0.13 TCGA-F4-6703-01 8 27927823 27927823 G A NUGGC Nonsense_Mutation p.R32* 0.11 TCGA-F4-6703-01 8 28929231 28929231 G A KIF13B Silent p.T1708T 0.10 TCGA-F4-6703-01 8 35542150 35542150 T A UNC5D Missense_Mutation p.C268S 0.08 deleterious(0) probably_damaging(0.995) TCGA-F4-6703-01 8 37702147 37702147 G - BRF2 Frame_Shift_Del p.P374Lfs*16 0.18 TCGA-F4-6703-01 8 38187222 38187222 T - WHSC1L1 Frame_Shift_Del p.T419Pfs*8 0.08 TCGA-F4-6703-01 8 41554217 41554217 C T ANK1 Silent p.P945P 0.19 TCGA-F4-6703-01 8 42214859 42214859 A - POLB Frame_Shift_Del p.V169Wfs*27 0.08 TCGA-F4-6703-01 8 43014066 43014066 G A HGSNAT Silent p.R124R 0.09 TCGA-F4-6703-01 8 43173724 43173724 A C POTEA RNA 0.11 TCGA-F4-6703-01 8 48686849 48686849 G A PRKDC Missense_Mutation p.A4090V 0.13 probably_damaging(0.955) TCGA-F4-6703-01 8 49833829 49833829 C T SNAI2 5'UTR 0.12 TCGA-F4-6703-01 8 57079501 57079501 C T PLAG1 Silent p.P268P 0.14 TCGA-F4-6703-01 8 59058737 59058737 C T FAM110B 5'UTR 0.16 TCGA-F4-6703-01 8 59060326 59060326 G C FAM110B 3'UTR 0.11 TCGA-F4-6703-01 8 61765977 61765977 T C CHD7 Silent p.S2231S 0.16 TCGA-F4-6703-01 8 6385133 6385133 A G ANGPT2 Missense_Mutation p.L170S 0.08 deleterious(0) probably_damaging(0.999) TCGA-F4-6703-01 8 86392975 86392975 C T CA2 Missense_Mutation p.A247V 0.08 tolerated(0.37) benign(0.003) TCGA-F4-6703-01 8 8748394 8748394 G A MFHAS1 Silent p.H725H 0.11 TCGA-F4-6703-01 8 87560662 87560662 C T CPNE3 Missense_Mutation p.A338V 0.09 deleterious(0) benign(0.291) TCGA-F4-6703-01 8 93017422 93017422 G A RUNX1T1 Missense_Mutation p.A232V 0.13 tolerated(0.08) benign(0.142) TCGA-F4-6703-01 8 93026963 93026963 A G RUNX1T1 Silent p.S115S 0.16 TCGA-F4-6703-01 8 95844296 95844296 C T INTS8 Missense_Mutation p.T216M 0.14 deleterious(0) probably_damaging(0.93) TCGA-F4-6703-01 8 97978218 97978218 A G CPQ Missense_Mutation p.D302G 0.09 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 9 100092635 100092636 - A CCDC180 Frame_Shift_Ins p.L667Tfs*8 0.13 TCGA-F4-6703-01 9 107288652 107288652 A G OR13C4 Missense_Mutation p.V280A 0.09 deleterious(0) benign(0.217) TCGA-F4-6703-01 9 111624864 111624864 C A ACTL7A Missense_Mutation p.L88M 0.15 deleterious(0) probably_damaging(0.941) TCGA-F4-6703-01 9 116930991 116930991 C A COL27A1 Missense_Mutation p.H386N 0.16 unknown(0) TCGA-F4-6703-01 9 117029812 117029812 G A COL27A1 Missense_Mutation p.G1159D 0.12 probably_damaging(1) TCGA-F4-6703-01 9 117853062 117853062 G A TNC Missense_Mutation p.P79L 0.13 tolerated(0.11) benign(0.002) TCGA-F4-6703-01 9 118973978 118973978 A G PAPPA Missense_Mutation p.H562R 0.15 deleterious(0.01) benign(0.013) TCGA-F4-6703-01 9 119567943 119567943 C T ASTN2 Silent p.V737V 0.12 TCGA-F4-6703-01 9 121976121 121976121 A T BRINP1 Intron 0.21 TCGA-F4-6703-01 9 123912495 123912495 C G CNTRL Missense_Mutation p.Q1233E 0.15 benign(0.002) TCGA-F4-6703-01 9 125330263 125330263 T C OR1L8 Missense_Mutation p.N165S 0.12 tolerated(0.46) benign(0.302) TCGA-F4-6703-01 9 126392730 126392730 G A DENND1A Missense_Mutation p.A215V 0.14 deleterious(0.04) possibly_damaging(0.591) TCGA-F4-6703-01 9 129598727 129598727 C T ZBTB43 3'UTR 0.16 TCGA-F4-6703-01 9 134386814 134386814 C T POMT1 Missense_Mutation p.P338S 0.10 tolerated(0.11) possibly_damaging(0.839) TCGA-F4-6703-01 9 134955185 134955185 T C MED27 Missense_Mutation p.Q16R 0.09 tolerated(0.58) benign(0.018) TCGA-F4-6703-01 9 139405201 139405201 C T NOTCH1 Missense_Mutation p.A882T 0.09 deleterious(0) probably_damaging(0.916) TCGA-F4-6703-01 9 139417569 139417569 C T NOTCH1 Missense_Mutation p.E159K 0.15 tolerated(0.48) possibly_damaging(0.487) TCGA-F4-6703-01 9 139837324 139837324 G T FBXW5 Silent p.T141T 0.09 TCGA-F4-6703-01 9 140289776 140289776 C T EXD3 Missense_Mutation p.A12T 0.09 tolerated_low_confidence(0.41) unknown(0) TCGA-F4-6703-01 9 140952657 140952657 G A CACNA1B Silent p.E1421E 0.10 TCGA-F4-6703-01 9 20982431 20982431 G A FOCAD Missense_Mutation p.A1572T 0.11 tolerated(1) benign(0.002) TCGA-F4-6703-01 9 35044922 35044922 A G C9orf131 Missense_Mutation p.R766G 0.10 tolerated(1) benign(0) TCGA-F4-6703-01 9 35090621 35090621 G A PIGO Missense_Mutation p.A899V 0.15 deleterious(0) possibly_damaging(0.484) TCGA-F4-6703-01 9 35682146 35682146 C T TPM2 Missense_Mutation p.A263T 0.16 tolerated(0.46) benign(0.005) TCGA-F4-6703-01 9 35724208 35724208 A G TLN1 Missense_Mutation p.L212P 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6703-01 9 35819328 35819328 C T FAM221B Missense_Mutation p.R306H 0.07 deleterious(0.02) probably_damaging(0.983) TCGA-F4-6703-01 9 35957525 35957525 C T OR2S2 Missense_Mutation p.A191T 0.10 tolerated(0.15) benign(0.248) TCGA-F4-6703-01 9 439304 439304 C T DOCK8 Silent p.D1713D 0.09 TCGA-F4-6703-01 9 6587180 6587180 T C GLDC Missense_Mutation p.E604G 0.15 deleterious(0) possibly_damaging(0.741) TCGA-F4-6703-01 9 74360045 74360045 C T TMEM2 Missense_Mutation p.R308Q 0.16 tolerated(0.08) possibly_damaging(0.808) TCGA-F4-6703-01 9 80049358 80049358 C G GNA14 Missense_Mutation p.Q130H 0.14 tolerated(0.14) benign(0.042) TCGA-F4-6703-01 9 84547410 84547410 A - RP11-383M4.6 Intron 0.11 TCGA-F4-6703-01 9 94519714 94519714 C T ROR2 Silent p.P101P 0.11 TCGA-F4-6703-01 X 100106250 100106250 C T NOX1 Missense_Mutation p.R290H 0.16 deleterious(0) probably_damaging(0.953) TCGA-F4-6703-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.23 TCGA-F4-6703-01 X 105855625 105855625 G T CXorf57 Missense_Mutation p.Q105H 0.14 deleterious(0.02) probably_damaging(0.935) TCGA-F4-6703-01 X 107924113 107924113 A G COL4A5 Splice_Site p.X1339_splice 0.10 TCGA-F4-6703-01 X 108708445 108708446 - T GUCY2F Frame_Shift_Ins p.E320Rfs*16 0.10 TCGA-F4-6703-01 X 11157123 11157123 C T ARHGAP6 Missense_Mutation p.A929T 0.22 tolerated_low_confidence(0.3) benign(0.003) TCGA-F4-6703-01 X 114141414 114141414 G A HTR2C Silent p.T271T 0.17 TCGA-F4-6703-01 X 131516237 131516237 A C MBNL3 Missense_Mutation p.V341G 0.23 deleterious(0) possibly_damaging(0.707) TCGA-F4-6703-01 X 135574458 135574458 G T BRS3 Missense_Mutation p.G375V 0.29 deleterious(0.03) benign(0.009) TCGA-F4-6703-01 X 13801597 13801597 A G GPM6B Missense_Mutation p.F138L 0.33 deleterious(0) possibly_damaging(0.688) TCGA-F4-6703-01 X 138619245 138619245 T A F9 Missense_Mutation p.F55L 0.17 tolerated(0.49) benign(0.008) TCGA-F4-6703-01 X 152801761 152801761 G T ATP2B3 Missense_Mutation p.R19L 0.22 tolerated_low_confidence(0.3) benign(0.002) TCGA-F4-6703-01 X 152807315 152807315 C T ATP2B3 Missense_Mutation p.R199W 0.17 deleterious(0) probably_damaging(0.996) TCGA-F4-6703-01 X 215863 215863 C T PLCXD1 Missense_Mutation p.P278L 0.12 deleterious(0) possibly_damaging(0.854) TCGA-F4-6703-01 X 2670243 2670243 G A XG 5'UTR 0.11 TCGA-F4-6703-01 X 47496452 47496452 C G ELK1 Missense_Mutation p.S383T 0.19 deleterious(0) probably_damaging(0.977) TCGA-F4-6703-01 X 53263449 53263449 G - IQSEC2 Frame_Shift_Del p.S1474Vfs*21 0.13 TCGA-F4-6703-01 X 55033114 55033114 G A APEX2 Missense_Mutation p.R268H 0.31 deleterious(0.03) possibly_damaging(0.668) TCGA-F4-6703-01 X 64951037 64951037 A G MSN Missense_Mutation p.H179R 0.27 deleterious(0.03) probably_damaging(1) TCGA-F4-6703-01 X 70608152 70608152 A - TAF1 Frame_Shift_Del p.A854Pfs*14 0.08 TCGA-F4-6703-01 X 76711770 76711770 G T FGF16 Missense_Mutation p.K36N 0.26 benign(0.211) TCGA-F4-6703-01 X 77528555 77528555 T - CYSLTR1 Frame_Shift_Del p.K230Rfs*3 0.19 TCGA-F4-6703-01 X 77913664 77913664 G T ZCCHC5 Missense_Mutation p.P85H 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-F4-6703-01 X 88008747 88008747 G T CPXCR1 Missense_Mutation p.R111I 0.21 deleterious(0.04) benign(0.03) TCGA-F4-6703-01 X 96140245 96140245 T G RPA4 3'UTR 0.20 TCGA-F4-6703-01 X 9711650 9711650 A G GPR143 Missense_Mutation p.V241A 0.24 tolerated(0.69) benign(0.043) TCGA-F4-6704-01 10 105819447 105819447 C G COL17A1 Missense_Mutation p.E391Q 0.07 unknown(0) TCGA-F4-6704-01 10 22653902 22653902 A G SPAG6 Missense_Mutation p.K81R 0.10 tolerated(0.4) benign(0.02) TCGA-F4-6704-01 10 45496122 45496122 T G C10orf25 Missense_Mutation p.Q62H 0.20 tolerated_low_confidence(0.12) benign(0.1) TCGA-F4-6704-01 10 50315798 50315798 G A VSTM4 Missense_Mutation p.R100C 0.43 tolerated(0.07) benign(0.018) TCGA-F4-6704-01 10 89685298 89685298 T G PTEN Missense_Mutation p.Y65D 0.26 deleterious(0) probably_damaging(0.998) TCGA-F4-6704-01 11 121023655 121023655 G A TECTA Missense_Mutation p.A1391T 0.41 tolerated(0.39) benign(0.36) TCGA-F4-6704-01 11 2161403 2161403 C T IGF2 Missense_Mutation p.E42K 0.19 deleterious_low_confidence(0.02) benign(0.045) TCGA-F4-6704-01 11 55587809 55587809 G A OR5D18 Missense_Mutation p.R235H 0.09 tolerated(0.14) benign(0.114) TCGA-F4-6704-01 11 55653052 55653052 G T TRIM51 Missense_Mutation p.A50S 0.36 tolerated(0.18) benign(0.133) TCGA-F4-6704-01 11 6007209 6007209 G A OR52L1 Missense_Mutation p.R318C 0.14 deleterious(0) possibly_damaging(0.863) TCGA-F4-6704-01 11 63919813 63919813 C T MACROD1 Silent p.K117K 0.17 TCGA-F4-6704-01 11 64658889 64658889 G A ATG2A 3'Flank 0.15 TCGA-F4-6704-01 11 71260373 71260373 C T KRTAP5-9 3'UTR 0.34 TCGA-F4-6704-01 12 118456907 118456907 T C RFC5 Silent p.N32N 0.32 TCGA-F4-6704-01 12 54910037 54910037 T C NCKAP1L Missense_Mutation p.V319A 0.24 tolerated(0.13) benign(0.05) TCGA-F4-6704-01 12 88465569 88465569 A G CEP290 Silent p.D1948D 0.08 TCGA-F4-6704-01 12 9318705 9318705 G T PZP Missense_Mutation p.P734H 0.45 tolerated(0.11) benign(0.338) TCGA-F4-6704-01 13 103268752 103268752 C T TPP2 Missense_Mutation p.R133W 0.42 deleterious(0.04) probably_damaging(0.983) TCGA-F4-6704-01 14 35483999 35483999 G A SRP54 Silent p.L312L 0.14 TCGA-F4-6704-01 14 35484000 35484000 G A SRP54 Missense_Mutation p.D313N 0.14 tolerated(0.09) benign(0.017) TCGA-F4-6704-01 14 86092808 86092808 T C FLRT2 3'UTR 0.10 TCGA-F4-6704-01 14 95578571 95578571 C T DICER1 Missense_Mutation p.S685N 0.09 tolerated(0.47) benign(0.004) TCGA-F4-6704-01 15 22473098 22473098 C T IGHV4OR15-8 Missense_Mutation p.R58H 0.18 deleterious(0.02) probably_damaging(0.981) TCGA-F4-6704-01 15 90349397 90349397 G A ANPEP Missense_Mutation p.R140C 0.67 deleterious(0.02) benign(0.27) TCGA-F4-6704-01 16 4764142 4764142 T G ANKS3 Missense_Mutation p.M207L 0.19 tolerated(0.37) benign(0.035) TCGA-F4-6704-01 16 53532507 53532507 C T AKTIP Missense_Mutation p.R15Q 0.17 deleterious_low_confidence(0.02) benign(0.308) TCGA-F4-6704-01 16 57116422 57116422 G A NLRC5 Silent p.Q1861Q 0.16 TCGA-F4-6704-01 17 1582502 1582502 T C PRPF8 Splice_Site p.X470_splice 0.11 TCGA-F4-6704-01 17 21477609 21477609 G A AC138710.1 5'Flank 0.75 TCGA-F4-6704-01 17 29283386 29283386 G A ADAP2 Missense_Mutation p.R337Q 0.62 deleterious(0) probably_damaging(0.992) TCGA-F4-6704-01 17 34304645 34304645 A T CCL16 Missense_Mutation p.I107N 0.13 deleterious_low_confidence(0.01) benign(0.11) TCGA-F4-6704-01 17 6939772 6939772 C A SLC16A13 Nonsense_Mutation p.S24* 0.07 TCGA-F4-6704-01 19 16688427 16688427 G A MED26 Missense_Mutation p.R72W 0.10 deleterious(0) possibly_damaging(0.735) TCGA-F4-6704-01 19 36494550 36494550 A G SYNE4 Silent p.P332P 0.12 TCGA-F4-6704-01 19 39870672 39870672 A G SAMD4B Missense_Mutation p.T533A 0.11 tolerated(0.24) benign(0.002) TCGA-F4-6704-01 19 50028759 50028759 G T FCGRT Missense_Mutation p.G306V 0.22 deleterious(0.03) benign(0.1) TCGA-F4-6704-01 19 50482463 50482463 A G VRK3 Missense_Mutation p.L438P 0.09 deleterious(0) probably_damaging(1) TCGA-F4-6704-01 19 55085852 55085852 G T LILRA2 Missense_Mutation p.S52I 0.25 deleterious(0.05) benign(0.046) TCGA-F4-6704-01 19 6677935 6677935 G A C3 Silent p.G1650G 0.20 TCGA-F4-6704-01 1 109707175 109707175 C T KIAA1324 Missense_Mutation p.P110L 0.24 deleterious(0.02) probably_damaging(0.972) TCGA-F4-6704-01 1 110466455 110466455 G T CSF1 Missense_Mutation p.R404S 0.45 tolerated(0.13) benign(0.193) TCGA-F4-6704-01 1 111217039 111217039 G A KCNA3 Silent p.G131G 0.12 TCGA-F4-6704-01 1 156764463 156764463 C T PRCC Missense_Mutation p.R396W 0.13 deleterious(0) probably_damaging(0.969) TCGA-F4-6704-01 1 197026323 197026323 G T F13B Missense_Mutation p.Q331K 0.25 tolerated(1) benign(0) TCGA-F4-6704-01 1 20141772 20141772 G T RNF186 5'Flank 0.38 TCGA-F4-6704-01 1 204956576 204956576 G A NFASC Missense_Mutation p.R834Q 0.19 tolerated(0.26) probably_damaging(0.96) TCGA-F4-6704-01 1 205034298 205034298 G A CNTN2 Missense_Mutation p.D535N 0.12 deleterious(0) probably_damaging(1) TCGA-F4-6704-01 1 216420310 216420310 T A USH2A Missense_Mutation p.N809I 0.36 possibly_damaging(0.633) TCGA-F4-6704-01 1 229568426 229568426 G T ACTA1 Missense_Mutation p.P111T 0.33 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-F4-6704-01 1 43770818 43770818 G A TIE1 Missense_Mutation p.V119M 0.36 tolerated(0.75) probably_damaging(0.997) TCGA-F4-6704-01 20 3782022 3782022 A G CDC25B Missense_Mutation p.E276G 0.08 deleterious(0.02) probably_damaging(0.967) TCGA-F4-6704-01 20 43550284 43550284 C T PABPC1L Missense_Mutation p.A263V 0.30 tolerated(1) benign(0) TCGA-F4-6704-01 20 58519210 58519210 C T FAM217B Missense_Mutation p.S71L 0.10 deleterious(0) possibly_damaging(0.638) TCGA-F4-6704-01 20 62196820 62196820 G A HELZ2 Missense_Mutation p.R1119W 0.18 tolerated(0.13) benign(0.016) TCGA-F4-6704-01 21 46066359 46066359 C T KRTAP10-11 5'UTR 0.26 TCGA-F4-6704-01 2 166892934 166892934 C G SCN1A Missense_Mutation p.R1018T 0.13 deleterious(0) probably_damaging(0.99) TCGA-F4-6704-01 2 167168207 167168207 A T SCN9A Silent p.L20L 0.10 TCGA-F4-6704-01 2 179425543 179425543 C T TTN Missense_Mutation p.R28439Q 0.26 TCGA-F4-6704-01 2 179639823 179639823 C T TTN Silent p.V2205V 0.13 TCGA-F4-6704-01 2 206608110 206608110 T C NRP2 Missense_Mutation p.L492P 0.08 deleterious(0) probably_damaging(1) TCGA-F4-6704-01 2 206872059 206872059 C G INO80D Missense_Mutation p.D623H 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6704-01 2 216245566 216245566 T C FN1 Missense_Mutation p.E1801G 0.08 tolerated(0.19) probably_damaging(0.998) TCGA-F4-6704-01 2 233408395 233408395 C T CHRNG Nonsense_Mutation p.R341* 0.44 TCGA-F4-6704-01 2 237490166 237490166 A G ACKR3 Missense_Mutation p.E353G 0.10 deleterious(0) probably_damaging(0.983) TCGA-F4-6704-01 2 73902021 73902021 G A ALMS1P RNA 0.10 TCGA-F4-6704-01 3 151165765 151165765 C T IGSF10 Silent p.R668R 0.24 TCGA-F4-6704-01 3 172835435 172835435 C A SPATA16 Missense_Mutation p.K29N 0.15 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-F4-6704-01 3 179082163 179082163 C T MFN1 Silent p.V205V 0.11 TCGA-F4-6704-01 3 190147499 190147499 G C TMEM207 Missense_Mutation p.P109R 0.18 deleterious(0) probably_damaging(0.943) TCGA-F4-6704-01 3 440745 440745 T C CHL1 Missense_Mutation p.I1100T 0.13 deleterious(0) probably_damaging(1) TCGA-F4-6704-01 3 5212257 5212257 G A ARL8B Missense_Mutation p.V65I 0.26 deleterious(0.04) probably_damaging(0.965) TCGA-F4-6704-01 4 155253843 155253843 C T DCHS2 Missense_Mutation p.V674M 0.32 deleterious(0) possibly_damaging(0.827) TCGA-F4-6704-01 4 158257647 158257647 C A GRIA2 Missense_Mutation p.S531Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-F4-6704-01 4 69431432 69431432 G C UGT2B17 Missense_Mutation p.P244R 0.21 deleterious(0.01) possibly_damaging(0.716) TCGA-F4-6704-01 5 134076830 134076830 C T CAMLG Nonsense_Mutation p.R84* 0.27 TCGA-F4-6704-01 5 140476045 140476045 C T PCDHB2 Silent p.N557N 0.33 TCGA-F4-6704-01 5 140503119 140503119 C T PCDHB4 Silent p.F513F 0.11 TCGA-F4-6704-01 5 140554876 140554876 G T PCDHB7 3'UTR 0.11 TCGA-F4-6704-01 5 26902594 26902594 T G CDH9 Missense_Mutation p.N415T 0.14 deleterious(0.04) probably_damaging(0.995) TCGA-F4-6704-01 5 36049461 36049461 A G UGT3A2 Silent p.L125L 0.13 TCGA-F4-6704-01 5 72469673 72469673 T C TMEM174 Silent p.S201S 0.10 TCGA-F4-6704-01 5 75964636 75964636 A T IQGAP2 Missense_Mutation p.K937M 0.23 deleterious(0) probably_damaging(0.95) TCGA-F4-6704-01 6 117841050 117841050 G A DCBLD1 Missense_Mutation p.E133K 0.22 tolerated(0.33) possibly_damaging(0.486) TCGA-F4-6704-01 6 15511627 15511627 G A JARID2 Missense_Mutation p.V983I 0.43 tolerated(0.8) benign(0.082) TCGA-F4-6704-01 6 2833919 2833919 C T SERPINB1 Missense_Mutation p.D355N 0.10 tolerated(0.08) possibly_damaging(0.764) TCGA-F4-6704-01 6 3456489 3456489 A G SLC22A23 Missense_Mutation p.L102P 0.10 deleterious(0) probably_damaging(0.999) TCGA-F4-6704-01 6 47846116 47846116 G A PTCHD4 Missense_Mutation p.R822C 0.40 tolerated(0.1) benign(0.001) TCGA-F4-6704-01 6 74150030 74150030 C T MB21D1 Missense_Mutation p.R339H 0.12 deleterious(0.01) benign(0.065) TCGA-F4-6704-01 7 128371175 128371175 T C FAM71F1 3'UTR 0.11 TCGA-F4-6704-01 7 22767215 22767215 C T IL6 Missense_Mutation p.R58W 0.24 deleterious(0.04) benign(0.013) TCGA-F4-6704-01 7 2962902 2962902 G A CARD11 Missense_Mutation p.T669M 0.14 tolerated(0.14) benign(0.128) TCGA-F4-6704-01 7 99459458 99459458 G A CYP3A43 Missense_Mutation p.E417K 0.08 deleterious(0) probably_damaging(0.968) TCGA-F4-6704-01 8 124368705 124368705 G A ATAD2 Missense_Mutation p.R524C 0.16 deleterious(0) probably_damaging(0.998) TCGA-F4-6704-01 8 133092198 133092198 C T HHLA1 Missense_Mutation p.G267E 0.10 tolerated(0.26) benign(0.152) TCGA-F4-6704-01 8 133092199 133092199 C A HHLA1 Nonsense_Mutation p.G267* 0.10 TCGA-F4-6704-01 9 136516846 136516846 G A DBH Missense_Mutation p.G428S 0.09 deleterious(0.04) probably_damaging(0.995) TCGA-F4-6704-01 9 137593107 137593107 C T COL5A1 Silent p.S194S 0.25 TCGA-F4-6704-01 9 215365 215365 A C C9orf66 Nonsense_Mutation p.L11* 0.25 TCGA-F4-6704-01 9 35679858 35679858 C T CA9 Missense_Mutation p.T358I 0.11 tolerated(0.28) benign(0.086) TCGA-F4-6704-01 9 38593834 38593834 C G ANKRD18A Missense_Mutation p.E643Q 0.05 deleterious(0.02) possibly_damaging(0.727) TCGA-F4-6704-01 X 128605254 128605254 T C SMARCA1 Missense_Mutation p.E831G 0.11 deleterious(0.01) possibly_damaging(0.784) TCGA-F4-6704-01 X 1734066 1734066 G A ASMT 5'UTR 0.20 TCGA-F4-6704-01 X 3235624 3235624 G A MXRA5 Missense_Mutation p.A2033V 0.18 deleterious(0) probably_damaging(0.966) TCGA-F4-6704-01 X 40573908 40573908 G A MED14 Missense_Mutation p.R135C 0.19 tolerated(0.05) benign(0.007) TCGA-F4-6704-01 Y 5605514 5605514 C T PCDH11Y Missense_Mutation p.T1185I 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F4-6805-01 11 5373478 5373478 G T OR51B6 Silent p.L247L 0.19 TCGA-F4-6805-01 11 68549285 68549285 T C CPT1A Missense_Mutation p.M436V 0.19 deleterious(0.01) benign(0.005) TCGA-F4-6805-01 11 9192334 9192334 A G DENND5A Intron 0.14 TCGA-F4-6805-01 12 129431896 129431896 C T GLT1D1 Nonsense_Mutation p.R145* 0.23 TCGA-F4-6805-01 12 130184469 130184469 C T TMEM132D Missense_Mutation p.R285H 0.24 deleterious(0.05) benign(0.073) TCGA-F4-6805-01 12 25380246 25380246 T C KRAS Missense_Mutation p.Y71C 0.47 deleterious(0.02) probably_damaging(0.967) TCGA-F4-6805-01 12 25380276 25380276 T G KRAS Missense_Mutation p.Q61P 0.45 deleterious(0) probably_damaging(0.989) TCGA-F4-6805-01 12 50479959 50479959 C T SMARCD1 Missense_Mutation p.P65S 0.16 tolerated_low_confidence(0.23) benign(0.002) TCGA-F4-6805-01 13 61985310 61985310 C A PCDH20 3'UTR 0.16 TCGA-F4-6805-01 13 96239796 96239796 C A DZIP1 Missense_Mutation p.A739S 0.15 tolerated(1) benign(0.004) TCGA-F4-6805-01 14 20612455 20612455 G T OR4N5 Silent p.L187L 0.17 TCGA-F4-6805-01 14 29237139 29237139 C T FOXG1 Silent p.Y218Y 0.22 TCGA-F4-6805-01 14 74409235 74409235 G A FAM161B Missense_Mutation p.P433L 0.22 deleterious(0) benign(0.283) TCGA-F4-6805-01 14 94929475 94929475 G A SERPINA9 Silent p.D421D 0.14 TCGA-F4-6805-01 15 34014980 34014980 C T RYR3 Silent p.F2228F 0.36 TCGA-F4-6805-01 15 63111804 63111804 G A TLN2 Silent p.A2287A 0.23 TCGA-F4-6805-01 15 65108822 65108822 C T PIF1 Missense_Mutation p.R606H 0.19 tolerated(0.19) possibly_damaging(0.867) TCGA-F4-6805-01 15 78473128 78473128 T C ACSBG1 Missense_Mutation p.T408A 0.15 tolerated(0.12) benign(0.012) TCGA-F4-6805-01 15 83931958 83931958 C T BNC1 Missense_Mutation p.G682E 0.20 deleterious(0.01) probably_damaging(1) TCGA-F4-6805-01 16 15931767 15931767 A G MYH11 Missense_Mutation p.Y115H 0.21 probably_damaging(0.984) TCGA-F4-6805-01 16 56669801 56669801 G A MT1M 3'Flank 0.27 TCGA-F4-6805-01 16 68025975 68025975 G A DPEP2 Missense_Mutation p.S171L 0.24 deleterious(0) probably_damaging(0.987) TCGA-F4-6805-01 17 16253260 16253260 T C CENPV Missense_Mutation p.H165R 0.22 tolerated(0.25) benign(0.032) TCGA-F4-6805-01 17 26495483 26495483 T G NLK Missense_Mutation p.F283V 0.22 deleterious(0) probably_damaging(0.995) TCGA-F4-6805-01 17 39596806 39596806 C T KRT38 Missense_Mutation p.R123H 0.14 deleterious(0.02) benign(0.08) TCGA-F4-6805-01 17 70119814 70119815 - GT SOX9 Frame_Shift_Ins p.D274Wfs*6 0.19 TCGA-F4-6805-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.44 deleterious(0) probably_damaging(1) TCGA-F4-6805-01 17 80789001 80789001 T C ZNF750 Missense_Mutation p.R444G 0.09 tolerated(0.1) benign(0.013) TCGA-F4-6805-01 18 44635023 44635026 TTTC A HDHD2 3'UTR 0.30 TCGA-F4-6805-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.20 deleterious(0) probably_damaging(1) TCGA-F4-6805-01 19 21607298 21607298 T A ZNF493 Missense_Mutation p.S613T 0.17 tolerated(0.3) benign(0.442) TCGA-F4-6805-01 19 36268768 36268768 C T ARHGAP33 Silent p.C49C 0.16 TCGA-F4-6805-01 19 45988970 45988970 T C RTN2 Missense_Mutation p.E545G 0.12 deleterious_low_confidence(0) benign(0.403) TCGA-F4-6805-01 19 46974132 46974132 C T PNMAL1 Missense_Mutation p.R54H 0.21 tolerated(0.16) possibly_damaging(0.715) TCGA-F4-6805-01 19 51328969 51328969 G A KLK15 3'Flank 0.17 TCGA-F4-6805-01 19 51470547 51470547 G A KLK6 Silent p.G25G 0.24 TCGA-F4-6805-01 19 58867549 58867549 G T ZNF497 Missense_Mutation p.L485I 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-F4-6805-01 19 9002183 9002183 T G MUC16 Missense_Mutation p.T13441P 0.32 probably_damaging(0.991) TCGA-F4-6805-01 1 107691239 107691239 G A NTNG1 Silent p.S8S 0.18 TCGA-F4-6805-01 1 11106656 11106656 G A MASP2 Silent p.N123N 0.24 TCGA-F4-6805-01 1 156616862 156616862 T C BCAN Missense_Mutation p.S121P 0.10 deleterious(0) probably_damaging(0.999) TCGA-F4-6805-01 1 198288613 198288613 C T NEK7 Silent p.D290D 0.09 TCGA-F4-6805-01 1 206626713 206626713 G A SRGAP2 Missense_Mutation p.V697M 0.29 deleterious(0.04) possibly_damaging(0.897) TCGA-F4-6805-01 1 248636779 248636779 C A OR2T3 Missense_Mutation p.A43D 0.12 deleterious(0) probably_damaging(0.997) TCGA-F4-6805-01 1 61548196 61548196 G C NFIA Intron 0.38 TCGA-F4-6805-01 1 70616875 70616875 T A LRRC40 Missense_Mutation p.N485Y 0.17 deleterious(0.01) benign(0.126) TCGA-F4-6805-01 1 76259890 76259890 G A RABGGTB Missense_Mutation p.G276E 0.19 deleterious(0.01) probably_damaging(1) TCGA-F4-6805-01 1 78408419 78408419 T C NEXN Missense_Mutation p.F645L 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-F4-6805-01 20 3677841 3677841 C A SIGLEC1 Missense_Mutation p.E757D 0.14 tolerated(0.33) benign(0.012) TCGA-F4-6805-01 20 40713354 40713354 G A PTPRT Silent p.D1368D 0.39 TCGA-F4-6805-01 20 58318318 58318318 C T PHACTR3 Missense_Mutation p.T92M 0.12 deleterious(0) probably_damaging(0.999) TCGA-F4-6805-01 20 61341001 61341001 C T NTSR1 Missense_Mutation p.R148C 0.32 deleterious(0) probably_damaging(0.979) TCGA-F4-6805-01 21 38610870 38610870 G A DSCR3 Missense_Mutation p.P81L 0.27 deleterious(0.01) possibly_damaging(0.612) TCGA-F4-6805-01 21 46640915 46640915 C T ADARB1 Missense_Mutation p.R678C 0.62 deleterious(0.04) probably_damaging(0.979) TCGA-F4-6805-01 2 130949439 130949439 C T TUBA3E Missense_Mutation p.V440M 0.27 tolerated_low_confidence(0.17) benign(0.002) TCGA-F4-6805-01 2 167322031 167322031 G C SCN7A Missense_Mutation p.N294K 0.15 deleterious(0.04) possibly_damaging(0.608) TCGA-F4-6805-01 2 47380125 47380125 T C C2orf61 Missense_Mutation p.R38G 0.08 deleterious(0) probably_damaging(0.999) TCGA-F4-6805-01 2 71744167 71744167 C T DYSF Missense_Mutation p.R334W 0.27 deleterious(0) probably_damaging(0.944) TCGA-F4-6805-01 3 130120687 130120687 C T COL6A5 Nonsense_Mutation p.Q1406* 0.16 TCGA-F4-6805-01 3 158363504 158363504 T C GFM1 Silent p.D56D 0.20 TCGA-F4-6805-01 3 167277927 167277927 G A WDR49 Silent p.N192N 0.21 TCGA-F4-6805-01 3 178951964 178951964 G C PIK3CA Missense_Mutation p.G1007R 0.20 tolerated(0.1) possibly_damaging(0.817) TCGA-F4-6805-01 3 21465532 21465532 C A ZNF385D Missense_Mutation p.D293Y 0.28 deleterious(0) probably_damaging(0.99) TCGA-F4-6805-01 3 48423500 48423500 A G FBXW12 Missense_Mutation p.E407G 0.13 deleterious(0) probably_damaging(0.932) TCGA-F4-6805-01 3 48629185 48629185 C T COL7A1 Silent p.P476P 0.21 TCGA-F4-6805-01 3 87027941 87027941 C T VGLL3 Silent p.A46A 0.24 TCGA-F4-6805-01 3 98544211 98544211 C A DCBLD2 Splice_Site p.X191_splice 0.20 TCGA-F4-6805-01 3 9974957 9974957 T A IL17RC Missense_Mutation p.C686S 0.31 deleterious(0) probably_damaging(0.995) TCGA-F4-6805-01 4 155533543 155533543 G A FGG Silent p.F41F 0.18 TCGA-F4-6805-01 4 39219625 39219625 C T WDR19 Missense_Mutation p.A460V 0.11 tolerated(0.31) benign(0.002) TCGA-F4-6805-01 4 4249426 4249426 T C TMEM128 5'UTR 0.22 TCGA-F4-6805-01 5 137089809 137089809 C T HNRNPA0 5'UTR 0.28 TCGA-F4-6805-01 5 180047609 180047611 CCT - FLT4 In_Frame_Del p.R802del 0.27 TCGA-F4-6805-01 5 31534434 31534434 T C C5orf22 Missense_Mutation p.V46A 0.17 deleterious(0.05) benign(0.065) TCGA-F4-6805-01 5 68800109 68800109 G - OCLN Frame_Shift_Del p.R13Sfs*52 0.17 TCGA-F4-6805-01 6 11188491 11188491 T C NEDD9 Missense_Mutation p.N652S 0.27 tolerated(0.1) probably_damaging(0.991) TCGA-F4-6805-01 6 123117975 123117975 C T SMPDL3A Silent p.S111S 0.11 TCGA-F4-6805-01 6 12933928 12933928 G A PHACTR1 Missense_Mutation p.R105H 0.25 unknown(0) TCGA-F4-6805-01 6 150048233 150048233 G A NUP43 Nonsense_Mutation p.R339* 0.17 TCGA-F4-6805-01 6 151130244 151130244 A G PLEKHG1 Missense_Mutation p.I306V 0.20 tolerated(0.07) benign(0.325) TCGA-F4-6805-01 6 151673258 151673258 G A AKAP12 Silent p.E1244E 0.27 TCGA-F4-6805-01 6 74078932 74078932 G A OOEP Nonsense_Mutation p.R123* 0.10 TCGA-F4-6805-01 6 80837266 80837266 C - BCKDHB Frame_Shift_Del p.Q67Kfs*5 0.16 TCGA-F4-6805-01 7 149493793 149493793 G A SSPO RNA 0.20 TCGA-F4-6805-01 7 29606901 29606901 G A PRR15 3'UTR 0.20 TCGA-F4-6805-01 7 33195310 33195310 C G BBS9 Silent p.V108V 0.26 TCGA-F4-6805-01 7 3991533 3991533 G A SDK1 Silent p.T377T 0.30 TCGA-F4-6805-01 7 92923899 92923899 G A CCDC132 Missense_Mutation p.R373H 0.20 deleterious(0.03) probably_damaging(0.927) TCGA-F4-6805-01 8 100520060 100520060 A G VPS13B Missense_Mutation p.K1407R 0.15 deleterious(0.01) probably_damaging(0.914) TCGA-F4-6805-01 8 139163847 139163847 G A FAM135B Silent p.S957S 0.13 TCGA-F4-6805-01 8 143822647 143822647 A G SLURP1 Missense_Mutation p.S76P 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-F4-6805-01 8 77767940 77767940 G T ZFHX4 Missense_Mutation p.G2928V 0.43 probably_damaging(0.999) TCGA-F4-6805-01 9 113166618 113166618 A G SVEP1 Missense_Mutation p.S3219P 0.16 probably_damaging(0.948) TCGA-F4-6805-01 X 150345194 150345194 A T GPR50 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-F4-6805-01 X 17710476 17710476 G A NHS Missense_Mutation p.R247H 0.20 deleterious(0) possibly_damaging(0.855) TCGA-F4-6805-01 X 21857815 21857815 C G MBTPS2 5'UTR 0.21 TCGA-F4-6805-01 X 30254158 30254158 C A MAGEB3 Silent p.S39S 0.26 TCGA-F4-6805-01 X 34962022 34962022 A G FAM47B Silent p.E358E 0.08 TCGA-F4-6805-01 X 39933871 39933871 C T BCOR Missense_Mutation p.R243H 0.33 deleterious(0.04) benign(0.048) TCGA-F4-6805-01 X 53436163 53436163 G A SMC1A Silent p.L459L 0.19 TCGA-F4-6805-01 X 68381892 68381892 G A PJA1 Missense_Mutation p.P397L 0.38 deleterious(0.04) benign(0.165) TCGA-F4-6805-01 X 76939910 76939910 A T ATRX Missense_Mutation p.C280S 0.22 probably_damaging(0.995) TCGA-F4-6805-01 X 86919825 86919825 G C KLHL4 Missense_Mutation p.V663L 0.14 deleterious(0.03) possibly_damaging(0.453) TCGA-F4-6806-01 10 105362388 105362388 C T SH3PXD2A Missense_Mutation p.A835T 0.29 deleterious(0) possibly_damaging(0.671) TCGA-F4-6806-01 10 112266804 112266804 C T DUSP5 Missense_Mutation p.R214W 0.29 tolerated(0.07) benign(0.019) TCGA-F4-6806-01 10 121595178 121595178 T G MCMBP Silent p.P529P 0.26 TCGA-F4-6806-01 10 132944830 132944830 G A TCERG1L Silent p.R376R 0.17 TCGA-F4-6806-01 10 26463131 26463131 G A MYO3A Missense_Mutation p.R1313H 0.17 deleterious_low_confidence(0.04) benign(0) TCGA-F4-6806-01 10 35772405 35772405 C T CCNY Silent p.D76D 0.34 TCGA-F4-6806-01 10 6557001 6557001 C T PRKCQ Missense_Mutation p.V33I 0.19 tolerated(0.44) benign(0.029) TCGA-F4-6806-01 11 118965752 118965752 G A H2AFX Missense_Mutation p.P118L 0.11 deleterious_low_confidence(0.01) benign(0.15) TCGA-F4-6806-01 11 119004805 119004805 A G HINFP Missense_Mutation p.H384R 0.13 deleterious(0.02) benign(0.319) TCGA-F4-6806-01 11 30433114 30433114 G A MPPED2 Silent p.D262D 0.18 TCGA-F4-6806-01 11 32413565 32413565 C T WT1 Missense_Mutation p.R462Q 0.22 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-F4-6806-01 11 94281869 94281869 T A FUT4 3'UTR 0.30 TCGA-F4-6806-01 12 103238123 103238123 A G PAH Silent p.G352G 0.38 TCGA-F4-6806-01 12 113307485 113307485 C A RPH3A Intron 0.35 TCGA-F4-6806-01 12 115118848 115118848 A T TBX3 Missense_Mutation p.F165I 0.07 deleterious(0) probably_damaging(0.999) TCGA-F4-6806-01 12 132611107 132611107 C T RP13-977J11.5 RNA 0.07 TCGA-F4-6806-01 12 133242022 133242024 CTT - POLE In_Frame_Del p.K778del 0.26 TCGA-F4-6806-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.32 deleterious(0) possibly_damaging(0.479) TCGA-F4-6806-01 12 28603292 28603292 G A CCDC91 Missense_Mutation p.E289K 0.31 tolerated(0.07) benign(0.008) TCGA-F4-6806-01 12 4768210 4768210 A G NDUFA9 Missense_Mutation p.D140G 0.11 tolerated(0.2) benign(0.005) TCGA-F4-6806-01 12 52115530 52115530 C T SCN8A Silent p.S612S 0.31 TCGA-F4-6806-01 12 52385715 52385715 C T ACVR1B Nonsense_Mutation p.R485* 0.13 TCGA-F4-6806-01 12 58174104 58174104 A T METTL21B Missense_Mutation p.N119I 0.24 deleterious(0) probably_damaging(1) TCGA-F4-6806-01 12 67699139 67699139 A G CAND1 Missense_Mutation p.Y564C 0.12 deleterious(0) possibly_damaging(0.885) TCGA-F4-6806-01 12 8212564 8212564 A G C3AR1 Missense_Mutation p.L73P 0.08 deleterious(0) probably_damaging(0.997) TCGA-F4-6806-01 12 8672930 8672930 C T CLEC4D Missense_Mutation p.R165C 0.24 deleterious(0.01) possibly_damaging(0.862) TCGA-F4-6806-01 12 936258 936258 G A WNK1 Missense_Mutation p.C328Y 0.19 deleterious(0) unknown(0) TCGA-F4-6806-01 13 31903638 31903638 G C B3GALTL Missense_Mutation p.A444P 0.38 deleterious(0) probably_damaging(0.996) TCGA-F4-6806-01 13 33284231 33284232 CA - PDS5B Frame_Shift_Del p.I706Qfs*13 0.12 TCGA-F4-6806-01 13 35683425 35683425 A C NBEA Splice_Site p.X561_splice 0.10 TCGA-F4-6806-01 14 104640200 104640200 G A KIF26A Silent p.P675P 0.26 TCGA-F4-6806-01 14 36039855 36039855 A G RALGAPA1 Silent p.A1982A 0.46 TCGA-F4-6806-01 14 38681188 38681188 C T SSTR1 3'UTR 0.20 TCGA-F4-6806-01 14 60193845 60193845 C T RTN1 Silent p.P519P 0.20 TCGA-F4-6806-01 14 76368505 76368505 A G TTLL5 Missense_Mutation p.Q1254R 0.12 deleterious_low_confidence(0.03) probably_damaging(0.978) TCGA-F4-6806-01 14 96707396 96707396 C T BDKRB2 Missense_Mutation p.T244M 0.14 deleterious(0) probably_damaging(0.996) TCGA-F4-6806-01 15 23931756 23931756 G A NDN Silent p.R203R 0.18 TCGA-F4-6806-01 15 33765647 33765647 G A RYR3 Missense_Mutation p.A27T 0.39 benign(0.086) TCGA-F4-6806-01 15 60740228 60740228 A G NARG2 Missense_Mutation p.C746R 0.38 deleterious(0) probably_damaging(1) TCGA-F4-6806-01 15 73635945 73635945 C T HCN4 Silent p.P330P 0.23 TCGA-F4-6806-01 16 19592844 19592844 C T C16orf62 Intron 0.12 TCGA-F4-6806-01 16 30006868 30006868 T C HIRIP3 Missense_Mutation p.D20G 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-F4-6806-01 16 30616392 30616392 G A ZNF689 Silent p.P232P 0.26 TCGA-F4-6806-01 17 33689910 33689910 C T SLFN11 Missense_Mutation p.G306E 0.22 tolerated(0.17) possibly_damaging(0.501) TCGA-F4-6806-01 17 38812806 38812806 A T KRT222 Missense_Mutation p.S246T 0.18 deleterious(0) probably_damaging(0.985) TCGA-F4-6806-01 17 39578363 39578363 C T KRT37 Silent p.T326T 0.38 TCGA-F4-6806-01 17 60743603 60743603 G A MRC2 Silent p.E223E 0.18 TCGA-F4-6806-01 18 21393053 21393053 A G LAMA3 Missense_Mutation p.I592V 0.36 benign(0.001) TCGA-F4-6806-01 18 70205436 70205436 G A CBLN2 Missense_Mutation p.S217L 0.26 deleterious(0.02) benign(0.273) TCGA-F4-6806-01 19 14568868 14568868 G A PKN1 Silent p.L403L 0.09 TCGA-F4-6806-01 19 21909413 21909413 G A ZNF100 3'UTR 0.29 TCGA-F4-6806-01 19 30935668 30935668 C T ZNF536 Missense_Mutation p.S400L 0.39 deleterious(0) benign(0.185) TCGA-F4-6806-01 19 41387536 41387536 G A CYP2A7 Nonsense_Mutation p.R101* 0.14 TCGA-F4-6806-01 19 44470312 44470312 C T ZNF221 Missense_Mutation p.H220Y 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-F4-6806-01 19 4793244 4793244 G A FEM1A Missense_Mutation p.G460S 0.26 tolerated(0.86) benign(0.016) TCGA-F4-6806-01 19 52468639 52468639 G T ZNF350 Missense_Mutation p.S356Y 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-F4-6806-01 19 53770380 53770380 C T VN1R4 Missense_Mutation p.R180H 0.12 tolerated(0.29) benign(0) TCGA-F4-6806-01 19 53793799 53793799 G A BIRC8 5'UTR 0.26 TCGA-F4-6806-01 19 57967471 57967471 G C VN1R1 Missense_Mutation p.H128Q 0.13 tolerated(0.06) possibly_damaging(0.775) TCGA-F4-6806-01 19 59011024 59011024 C T SLC27A5 Missense_Mutation p.S501N 0.42 tolerated(0.32) benign(0.01) TCGA-F4-6806-01 1 111434048 111434048 G A CD53 Silent p.L6L 0.11 TCGA-F4-6806-01 1 11184573 11184573 G A MTOR Missense_Mutation p.S2215F 0.24 deleterious(0) possibly_damaging(0.69) TCGA-F4-6806-01 1 173616057 173616057 G A ANKRD45 Missense_Mutation p.R142W 0.18 deleterious(0.02) possibly_damaging(0.676) TCGA-F4-6806-01 1 173795834 173795834 G A DARS2 Missense_Mutation p.S46N 0.15 deleterious(0.05) benign(0.036) TCGA-F4-6806-01 1 3440764 3440764 G A MEGF6 Silent p.C176C 0.62 TCGA-F4-6806-01 1 35250841 35250841 C T GJB3 Missense_Mutation p.R160C 0.29 deleterious(0.02) probably_damaging(0.989) TCGA-F4-6806-01 1 64608366 64608366 A G ROR1 Intron 0.55 TCGA-F4-6806-01 1 78279446 78279446 G A FAM73A Missense_Mutation p.R222H 0.21 tolerated(0.11) benign(0.094) TCGA-F4-6806-01 1 86961245 86961245 C T CLCA1 Missense_Mutation p.T667M 0.09 tolerated(0.09) possibly_damaging(0.73) TCGA-F4-6806-01 20 31672738 31672738 C T BPIFB4 Missense_Mutation p.R240W 0.50 tolerated(0.05) probably_damaging(0.952) TCGA-F4-6806-01 20 33000445 33000445 C T ITCH Missense_Mutation p.L113F 0.32 tolerated(0.06) benign(0.015) TCGA-F4-6806-01 20 56073442 56073442 T C CTCFL Intron 0.21 TCGA-F4-6806-01 20 60831163 60831163 A G OSBPL2 5'UTR 0.11 TCGA-F4-6806-01 20 61476962 61476962 C T TCFL5 Intron 0.33 TCGA-F4-6806-01 21 46685513 46685513 G A POFUT2 Missense_Mutation p.R392W 0.48 deleterious(0) probably_damaging(1) TCGA-F4-6806-01 22 39496391 39496391 G A APOBEC3H Silent p.P36P 0.22 TCGA-F4-6806-01 22 46658465 46658465 G A PKDREJ Missense_Mutation p.A252V 0.36 tolerated(0.21) possibly_damaging(0.523) TCGA-F4-6806-01 2 114257298 114257298 C T FOXD4L1 Silent p.I155I 0.14 TCGA-F4-6806-01 2 137988713 137988713 C T THSD7B Missense_Mutation p.T608M 0.11 deleterious(0.01) possibly_damaging(0.851) TCGA-F4-6806-01 2 155711652 155711652 G T KCNJ3 Missense_Mutation p.G445C 0.15 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-F4-6806-01 2 158617533 158617533 G A ACVR1 Missense_Mutation p.R375C 0.27 deleterious(0) possibly_damaging(0.882) TCGA-F4-6806-01 2 177036313 177036313 G A HOXD3 Missense_Mutation p.A204T 0.17 deleterious(0.03) benign(0.045) TCGA-F4-6806-01 2 179427028 179427028 C A TTN Missense_Mutation p.R27944I 0.34 TCGA-F4-6806-01 2 26683017 26683017 A G OTOF Missense_Mutation p.F1957S 0.14 deleterious(0.01) benign(0.146) TCGA-F4-6806-01 2 27726483 27726483 C T GCKR Silent p.I249I 0.37 TCGA-F4-6806-01 2 48808737 48808737 T C STON1-GTF2A1L Missense_Mutation p.I322T 0.11 deleterious(0) benign(0.064) TCGA-F4-6806-01 2 60983574 60983574 G A PAPOLG 5'UTR 0.44 TCGA-F4-6806-01 2 61300596 61300596 G C KIAA1841 Missense_Mutation p.R114T 0.36 tolerated(0.37) benign(0.344) TCGA-F4-6806-01 2 74595902 74595902 G A DCTN1 Missense_Mutation p.H603Y 0.17 tolerated(0.07) probably_damaging(0.992) TCGA-F4-6806-01 2 96942933 96942933 C T SNRNP200 Missense_Mutation p.R1993Q 0.20 deleterious(0) probably_damaging(0.987) TCGA-F4-6806-01 3 119120987 119120987 A G ARHGAP31 Missense_Mutation p.K463R 0.08 tolerated(0.27) benign(0.079) TCGA-F4-6806-01 3 130159662 130159662 G A COL6A5 Silent p.S2160S 0.12 TCGA-F4-6806-01 3 148901269 148901271 TTC - CP In_Frame_Del p.E803del 0.28 TCGA-F4-6806-01 3 183976202 183976202 G A ECE2 Intron 0.12 TCGA-F4-6806-01 3 186370362 186370362 G A FETUB Missense_Mutation p.R364H 0.26 tolerated(0.36) benign(0.03) TCGA-F4-6806-01 3 190967872 190967872 C T OSTN Missense_Mutation p.R122W 0.20 deleterious(0) probably_damaging(0.984) TCGA-F4-6806-01 3 19554802 19554802 C T KCNH8 Missense_Mutation p.P807L 0.40 tolerated(0.13) possibly_damaging(0.663) TCGA-F4-6806-01 3 55504150 55504150 C T WNT5A Silent p.T371T 0.26 TCGA-F4-6806-01 3 62258635 62258635 G C PTPRG Missense_Mutation p.R1066T 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6806-01 3 93780296 93780296 G A DHFRL1 Silent p.N20N 0.36 TCGA-F4-6806-01 4 10492028 10492028 T C CLNK 3'UTR 0.09 TCGA-F4-6806-01 4 106600536 106600536 A T ARHGEF38 3'UTR 0.10 TCGA-F4-6806-01 4 126373756 126373756 A T FAT4 Missense_Mutation p.D3862V 0.38 possibly_damaging(0.871) TCGA-F4-6806-01 4 126411631 126411631 G T FAT4 Nonsense_Mutation p.E4552* 0.11 TCGA-F4-6806-01 4 166960565 166960565 C T TLL1 Silent p.D411D 0.12 TCGA-F4-6806-01 4 62599230 62599230 G A LPHN3 Missense_Mutation p.V385M 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-F4-6806-01 4 76727713 76727713 A C USO1 Silent p.A797A 0.15 TCGA-F4-6806-01 4 85750200 85750200 G A WDFY3 Missense_Mutation p.R305W 0.08 deleterious(0) probably_damaging(0.943) TCGA-F4-6806-01 5 112174096 112174096 C G APC Nonsense_Mutation p.Y935* 0.41 TCGA-F4-6806-01 5 112175630 112175630 C T APC Nonsense_Mutation p.Q1447* 0.23 TCGA-F4-6806-01 5 131398418 131398418 G A IL3 Silent p.T131T 0.19 TCGA-F4-6806-01 5 140207726 140207726 C T PCDHA6 Missense_Mutation p.P17L 0.42 tolerated_low_confidence(0.49) benign(0.001) TCGA-F4-6806-01 5 140256947 140256947 G T PCDHA12 Missense_Mutation p.E630D 0.37 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-F4-6806-01 5 140755558 140755558 C T PCDHGA6 Silent p.D636D 0.19 TCGA-F4-6806-01 5 150924338 150924338 C T FAT2 Missense_Mutation p.R2117Q 0.25 probably_damaging(0.99) TCGA-F4-6806-01 5 173416415 173416415 G A C5orf47 Missense_Mutation p.R50H 0.31 tolerated(0.55) benign(0.238) TCGA-F4-6806-01 5 176885425 176885425 G A DBN1 Silent p.P472P 0.37 TCGA-F4-6806-01 6 102511879 102511879 G C GRIK2 Intron 0.16 TCGA-F4-6806-01 6 10529441 10529441 C T GCNT2 Silent p.Y99Y 0.25 TCGA-F4-6806-01 6 116446586 116446586 G A COL10A1 Nonsense_Mutation p.R24* 0.39 TCGA-F4-6806-01 6 16254925 16254925 G A GMPR Missense_Mutation p.V142M 0.37 deleterious(0) probably_damaging(0.979) TCGA-F4-6806-01 6 163987624 163987624 C T QKI Intron 0.27 TCGA-F4-6806-01 6 29407979 29407979 C T OR10C1 Missense_Mutation p.R63C 0.13 tolerated(0.05) benign(0.005) TCGA-F4-6806-01 6 31842604 31842614 GGGCAGGAGGA TGCC SLC44A4 Frame_Shift_Del p.S118Gfs*37 0.19 TCGA-F4-6806-01 6 33623571 33623571 C T ITPR3 Silent p.N63N 0.18 TCGA-F4-6806-01 6 44393899 44393899 A G CDC5L Silent p.K543K 0.10 TCGA-F4-6806-01 7 115581089 115581089 G T TFEC Intron 0.11 TCGA-F4-6806-01 7 149462516 149462516 C T ZNF467 Missense_Mutation p.D359N 0.14 deleterious(0.03) possibly_damaging(0.542) TCGA-F4-6806-01 7 48092461 48092461 C A C7orf57 Missense_Mutation p.P257H 0.30 tolerated_low_confidence(0.26) benign(0.006) TCGA-F4-6806-01 7 48685220 48685220 G A ABCA13 3'UTR 0.27 TCGA-F4-6806-01 8 102570941 102570941 C T GRHL2 Silent p.D193D 0.10 TCGA-F4-6806-01 8 10756298 10756298 G A XKR6 Missense_Mutation p.R364C 0.19 deleterious(0) probably_damaging(0.999) TCGA-F4-6806-01 8 145771084 145771084 C T ARHGAP39 Silent p.S690S 0.11 TCGA-F4-6806-01 8 26481783 26481783 G A DPYSL2 Silent p.K146K 0.08 TCGA-F4-6806-01 8 30889198 30889198 C T PURG 3'UTR 0.20 TCGA-F4-6806-01 8 39695662 39695662 G A ADAM2 Missense_Mutation p.R15W 0.39 tolerated(0.17) benign(0.006) TCGA-F4-6806-01 8 48752722 48752723 - CA PRKDC Frame_Shift_Ins p.D2436Wfs*3 0.09 TCGA-F4-6806-01 8 88885654 88885654 G T DCAF4L2 Silent p.I182I 0.16 TCGA-F4-6806-01 9 101900221 101900221 G T TGFBR1 Missense_Mutation p.V219F 0.36 deleterious(0) probably_damaging(0.998) TCGA-F4-6806-01 9 107588117 107588117 A T ABCA1 Missense_Mutation p.F797I 0.38 deleterious(0) possibly_damaging(0.549) TCGA-F4-6806-01 9 125612009 125612011 GTG - RC3H2 In_Frame_Del p.T1158del 0.57 TCGA-F4-6806-01 9 140173609 140173609 G A TOR4A Silent p.A156A 0.31 TCGA-F4-6806-01 9 16419049 16419049 G A BNC2 Nonsense_Mutation p.R1080* 0.11 TCGA-F4-6806-01 9 21385192 21385192 C A IFNA2 Missense_Mutation p.R46I 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-F4-6806-01 9 35722872 35722872 G A TLN1 Missense_Mutation p.R277C 0.19 tolerated(0.06) benign(0.004) TCGA-F4-6806-01 X 108926521 108926521 G A ACSL4 Silent p.F65F 0.14 TCGA-F4-6806-01 X 11783732 11783732 C T MSL3 Missense_Mutation p.T352M 0.20 deleterious(0.03) possibly_damaging(0.593) TCGA-F4-6806-01 X 118544262 118544262 T G SLC25A43 Missense_Mutation p.C209W 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6806-01 X 136112601 136112601 G A GPR101 Silent p.S411S 0.17 TCGA-F4-6806-01 X 150842424 150842425 - C PASD1 Frame_Shift_Ins p.V650Rfs*13 0.14 TCGA-F4-6806-01 X 152770136 152770136 C A BGN Missense_Mutation p.A16D 0.33 deleterious(0) benign(0.17) TCGA-F4-6806-01 X 30269381 30269381 C T MAGEB1 Silent p.Y257Y 0.38 TCGA-F4-6806-01 X 48819916 48819916 C T KCND1 Missense_Mutation p.G624S 0.31 tolerated_low_confidence(0.99) benign(0) TCGA-F4-6806-01 X 5827227 5827227 G A NLGN4X Nonsense_Mutation p.Q227* 0.23 TCGA-F4-6806-01 X 70320642 70320647 GGCAAA T FOXO4 Frame_Shift_Del p.G188Cfs*11 0.48 TCGA-F4-6806-01 X 96167393 96167394 - A DIAPH2 Frame_Shift_Ins p.Q221Tfs*6 0.10 TCGA-F4-6806-01 X 9866296 9866296 G A SHROOM2 Missense_Mutation p.A953T 0.37 tolerated(0.92) benign(0) TCGA-F4-6807-01 10 101371042 101371042 C A SLC25A28 Missense_Mutation p.G220V 0.57 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 10 106163567 106163567 C A CCDC147 Missense_Mutation p.P707H 0.71 deleterious(0) probably_damaging(0.99) TCGA-F4-6807-01 10 108448068 108448068 G A SORCS1 Missense_Mutation p.A481V 0.44 tolerated(0.06) probably_damaging(0.994) TCGA-F4-6807-01 10 1405857 1405857 G A ADARB2 Missense_Mutation p.T148M 0.43 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 10 26822428 26822428 G A APBB1IP Missense_Mutation p.A292T 0.27 deleterious(0.03) benign(0.392) TCGA-F4-6807-01 10 5435483 5435483 G T TUBAL3 Missense_Mutation p.F446L 0.29 tolerated_low_confidence(0.08) benign(0.003) TCGA-F4-6807-01 10 70405415 70405415 C T TET1 Missense_Mutation p.L977F 0.57 tolerated(0.37) benign(0.223) TCGA-F4-6807-01 10 89717609 89717609 G T PTEN Splice_Site p.X212_splice 0.58 TCGA-F4-6807-01 10 90699359 90699359 A G ACTA2 Missense_Mutation p.L238P 0.10 deleterious_low_confidence(0.02) benign(0.016) TCGA-F4-6807-01 11 101347157 101347157 G A TRPC6 Missense_Mutation p.S540L 0.23 deleterious(0) probably_damaging(0.996) TCGA-F4-6807-01 11 111368069 111368069 A T BTG4 Missense_Mutation p.L126Q 0.30 deleterious(0) possibly_damaging(0.873) TCGA-F4-6807-01 11 113131041 113131041 C T NCAM1 Silent p.I758I 0.34 TCGA-F4-6807-01 11 124794794 124794794 T A HEPACAM Missense_Mutation p.E86V 0.24 deleterious(0.02) possibly_damaging(0.906) TCGA-F4-6807-01 11 125267949 125267949 T C PKNOX2 Silent p.L193L 0.09 TCGA-F4-6807-01 11 56000326 56000326 A C OR5T2 Nonsense_Mutation p.Y112* 0.21 TCGA-F4-6807-01 11 57004341 57004341 G A APLNR Silent p.N46N 0.23 TCGA-F4-6807-01 11 59271712 59271712 C T OR4D11 Silent p.L222L 0.22 TCGA-F4-6807-01 11 64527201 64527201 G T PYGM Missense_Mutation p.A57D 0.14 deleterious(0) probably_damaging(0.999) TCGA-F4-6807-01 11 66328219 66328219 G T CTSF 3'Flank 0.15 TCGA-F4-6807-01 11 72424173 72424173 C A ARAP1 Intron 0.23 TCGA-F4-6807-01 12 111348806 111348806 G A MYL2 3'UTR 0.33 TCGA-F4-6807-01 12 118298122 118298122 C T KSR2 Missense_Mutation p.V99I 0.38 tolerated(0.27) benign(0.303) TCGA-F4-6807-01 12 131620626 131620626 C A GPR133 Missense_Mutation p.T771N 0.11 tolerated(0.14) possibly_damaging(0.61) TCGA-F4-6807-01 12 21377714 21377714 G T SLCO1B1 Missense_Mutation p.W602C 0.11 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.35 deleterious(0) possibly_damaging(0.479) TCGA-F4-6807-01 12 41327326 41327326 G T CNTN1 Missense_Mutation p.G256V 0.17 deleterious(0) probably_damaging(0.921) TCGA-F4-6807-01 12 55759252 55759252 C T OR6C75 Missense_Mutation p.R120C 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.684) TCGA-F4-6807-01 12 56515828 56515828 C T ZC3H10 3'UTR 0.18 TCGA-F4-6807-01 12 58158251 58158251 G C CYP27B1 Missense_Mutation p.A349G 0.40 tolerated(0.31) benign(0.003) TCGA-F4-6807-01 12 6923476 6923476 G T CD4 Intron 0.16 TCGA-F4-6807-01 12 7942182 7942182 A T NANOG 5'UTR 0.08 TCGA-F4-6807-01 13 103395337 103395337 T G LINC00283 5'Flank 0.24 TCGA-F4-6807-01 13 36379877 36379877 G A DCLK1 Nonsense_Mutation p.R635* 0.11 TCGA-F4-6807-01 14 106067955 106067955 C A IGHE Missense_Mutation p.E37D 0.18 tolerated(0.56) benign(0.066) TCGA-F4-6807-01 14 20926829 20926829 T C TMEM55B Silent p.G248G 0.08 TCGA-F4-6807-01 14 29238456 29238456 C G FOXG1 3'UTR 0.10 TCGA-F4-6807-01 14 36295778 36295778 A G BRMS1L Missense_Mutation p.E19G 0.13 tolerated(0.08) benign(0.255) TCGA-F4-6807-01 14 64598988 64598988 T C SYNE2 Silent p.F4782F 0.10 TCGA-F4-6807-01 14 77492807 77492807 C T IRF2BPL Silent p.Q443Q 0.29 TCGA-F4-6807-01 14 93118333 93118333 C A RIN3 Silent p.T313T 0.31 TCGA-F4-6807-01 15 28235770 28235770 G A OCA2 Silent p.A356A 0.30 TCGA-F4-6807-01 15 42120346 42120346 C T JMJD7-PLA2G4B Silent p.A8A 0.44 TCGA-F4-6807-01 15 48548108 48548108 G C SLC12A1 Splice_Site p.X681_splice 0.26 TCGA-F4-6807-01 15 51040388 51040388 T C SPPL2A Silent p.S124S 0.44 TCGA-F4-6807-01 16 28506514 28506514 C T APOBR Missense_Mutation p.A51V 0.25 deleterious(0.01) possibly_damaging(0.499) TCGA-F4-6807-01 16 3100375 3100375 C A MMP25 Silent p.P163P 0.22 TCGA-F4-6807-01 16 31091608 31091608 C A ZNF646 Missense_Mutation p.H1321Q 0.35 deleterious(0.04) possibly_damaging(0.864) TCGA-F4-6807-01 16 31289312 31289312 G A ITGAM Missense_Mutation p.R413Q 0.26 tolerated(0.38) benign(0.263) TCGA-F4-6807-01 16 4308231 4308231 C A TFAP4 Missense_Mutation p.G281V 0.21 deleterious(0) unknown(0) TCGA-F4-6807-01 16 4867646 4867646 G T GLYR1 Missense_Mutation p.L287I 0.10 tolerated(0.42) possibly_damaging(0.548) TCGA-F4-6807-01 16 5046889 5046889 C T SEC14L5 Missense_Mutation p.R272W 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 16 602891 602891 T C CAPN15 Missense_Mutation p.L978P 0.30 deleterious(0) probably_damaging(0.999) TCGA-F4-6807-01 16 619050 619050 T C NHLRC4 3'UTR 0.28 TCGA-F4-6807-01 16 67576567 67576567 C A FAM65A Silent p.P646P 0.26 TCGA-F4-6807-01 16 71997103 71997103 C A PKD1L3 Splice_Site 0.23 TCGA-F4-6807-01 16 86613576 86613576 G A FOXL1 3'UTR 0.25 TCGA-F4-6807-01 16 89597166 89597166 G A SPG7 Missense_Mutation p.G313R 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 17 12656177 12656177 G T MYOCD Missense_Mutation p.K524N 0.40 deleterious(0) probably_damaging(0.999) TCGA-F4-6807-01 17 20806017 20806017 C T RP11-344E13.3 RNA 0.43 TCGA-F4-6807-01 17 21730759 21730759 G T UBBP4 Missense_Mutation p.A21S 0.29 deleterious(0.03) benign(0.01) TCGA-F4-6807-01 17 27380496 27380496 G T PIPOX Silent p.G181G 0.16 TCGA-F4-6807-01 17 40321571 40321571 G A KCNH4 Missense_Mutation p.P505L 0.41 deleterious(0.02) probably_damaging(0.994) TCGA-F4-6807-01 17 43107518 43107518 G T DCAKD Missense_Mutation p.L116M 0.14 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 17 43922988 43922988 C A SPPL2C Missense_Mutation p.A239D 0.18 tolerated(0.61) benign(0.023) TCGA-F4-6807-01 17 43924002 43924002 G A SPPL2C Missense_Mutation p.G577E 0.36 tolerated(0.52) benign(0.006) TCGA-F4-6807-01 17 56350115 56350115 G A MPO Missense_Mutation p.L596F 0.27 deleterious(0) probably_damaging(0.999) TCGA-F4-6807-01 17 7107036 7107036 C A DLG4 Missense_Mutation p.A147S 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-F4-6807-01 17 7578455 7578455 C G TP53 Missense_Mutation p.A159P 0.46 deleterious(0) probably_damaging(0.991) TCGA-F4-6807-01 17 79862747 79862747 C T PCYT2 Missense_Mutation p.A396T 0.24 tolerated(0.49) benign(0.06) TCGA-F4-6807-01 17 80130720 80130720 T A CCDC57 Missense_Mutation p.H508L 0.32 tolerated(0.28) benign(0.019) TCGA-F4-6807-01 18 29850303 29850303 G T GAREM Missense_Mutation p.P537H 0.37 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 18 34802287 34802287 T A KIAA1328 3'UTR 0.42 TCGA-F4-6807-01 18 44013334 44013334 G A RNF165 Silent p.S81S 0.40 TCGA-F4-6807-01 18 76754467 76754467 G T SALL3 Missense_Mutation p.A826S 0.17 tolerated(1) benign(0.008) TCGA-F4-6807-01 19 14273637 14273637 C T LPHN1 Missense_Mutation p.V331M 0.69 deleterious(0) probably_damaging(0.99) TCGA-F4-6807-01 19 17025494 17025494 C A CPAMD8 Silent p.V1300V 0.49 TCGA-F4-6807-01 19 17321538 17321538 G A MYO9B Silent p.K1937K 0.50 TCGA-F4-6807-01 19 17750710 17750710 C A UNC13A Missense_Mutation p.R932L 0.56 deleterious(0) benign(0.018) TCGA-F4-6807-01 19 19626265 19626265 G A TSSK6 5'UTR 0.27 TCGA-F4-6807-01 19 1978713 1978713 C T CSNK1G2 Silent p.F137F 0.66 TCGA-F4-6807-01 19 31770448 31770448 C G TSHZ3 Missense_Mutation p.R84P 0.11 tolerated(0.11) probably_damaging(0.961) TCGA-F4-6807-01 19 42818460 42818460 G T TMEM145 Missense_Mutation p.D53Y 0.28 deleterious(0) benign(0.186) TCGA-F4-6807-01 19 47423193 47423193 G T ARHGAP35 Nonsense_Mutation p.E421* 0.25 TCGA-F4-6807-01 19 49253669 49253669 C T FUT1 Silent p.P290P 0.35 TCGA-F4-6807-01 19 51133354 51133354 G T SYT3 Missense_Mutation p.P250Q 0.24 tolerated(0.32) benign(0.004) TCGA-F4-6807-01 19 51205784 51205784 T A SHANK1 Nonsense_Mutation p.K563* 0.24 TCGA-F4-6807-01 19 54721011 54721011 C A LILRB3 Missense_Mutation p.G617V 0.29 deleterious(0.01) probably_damaging(0.944) TCGA-F4-6807-01 19 56113501 56113501 C T ZNF524 Missense_Mutation p.P8L 0.31 deleterious_low_confidence(0.04) unknown(0) TCGA-F4-6807-01 19 57746748 57746748 G A AURKC Missense_Mutation p.R298Q 0.24 tolerated(0.22) benign(0.014) TCGA-F4-6807-01 19 6697465 6697465 C T C3 Missense_Mutation p.V896I 0.12 tolerated(0.13) benign(0.048) TCGA-F4-6807-01 19 8121127 8121127 C T CCL25 Silent p.S55S 0.16 TCGA-F4-6807-01 1 110282492 110282492 A G GSTM3 Silent p.D29D 0.37 TCGA-F4-6807-01 1 12854424 12854424 C T PRAMEF1 Silent p.S216S 0.25 TCGA-F4-6807-01 1 150259236 150259236 C T C1orf51 Missense_Mutation p.P343L 0.24 deleterious_low_confidence(0) benign(0.173) TCGA-F4-6807-01 1 152331350 152331350 A G FLG2 Missense_Mutation p.L4P 0.10 unknown(0) TCGA-F4-6807-01 1 160771696 160771696 C T LY9 Intron 0.19 TCGA-F4-6807-01 1 16269595 16269595 C A ZBTB17 Missense_Mutation p.V598L 0.22 tolerated(0.09) probably_damaging(0.938) TCGA-F4-6807-01 1 165667587 165667587 C A ALDH9A1 Intron 0.22 TCGA-F4-6807-01 1 204403008 204403008 G T PIK3C2B Missense_Mutation p.S1252R 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-F4-6807-01 1 215901430 215901430 T A USH2A Missense_Mutation p.Q4003L 0.41 possibly_damaging(0.672) TCGA-F4-6807-01 1 217604509 217604509 G A GPATCH2 Missense_Mutation p.P522L 0.20 deleterious_low_confidence(0.01) benign(0) TCGA-F4-6807-01 1 232144813 232144813 G A DISC1 3'UTR 0.36 TCGA-F4-6807-01 1 232942550 232942550 G A MAP10 Missense_Mutation p.R594H 0.29 tolerated(0.3) benign(0.004) TCGA-F4-6807-01 1 240071633 240071633 A G CHRM3 Silent p.E294E 0.15 TCGA-F4-6807-01 1 248685449 248685449 C T OR2G6 Missense_Mutation p.L168F 0.34 tolerated(0.29) benign(0.06) TCGA-F4-6807-01 1 27120801 27120801 C T PIGV Silent p.P92P 0.32 TCGA-F4-6807-01 1 55457508 55457508 G A TMEM61 Splice_Site p.X122_splice 0.38 TCGA-F4-6807-01 1 57411568 57411568 T C C8B Missense_Mutation p.Y344C 0.23 deleterious(0) probably_damaging(0.979) TCGA-F4-6807-01 1 6610547 6610547 A G NOL9 Silent p.S175S 0.10 TCGA-F4-6807-01 1 86362079 86362079 G T COL24A1 Missense_Mutation p.P931Q 0.50 tolerated(0.07) benign(0.041) TCGA-F4-6807-01 20 31375139 31375139 G T DNMT3B Missense_Mutation p.G179V 0.25 tolerated(0.37) benign(0.001) TCGA-F4-6807-01 20 334321 334321 C A NRSN2 3'UTR 0.48 TCGA-F4-6807-01 20 44676193 44676193 A G SLC12A5 Missense_Mutation p.K653E 0.28 deleterious(0) probably_damaging(0.981) TCGA-F4-6807-01 20 4706150 4706150 C T PRND 3'UTR 0.81 TCGA-F4-6807-01 20 49621344 49621344 C T KCNG1 Splice_Site p.X259_splice 0.42 TCGA-F4-6807-01 20 56929290 56929290 G A RAB22A Silent p.A152A 0.18 TCGA-F4-6807-01 22 17447083 17447083 G T GAB4 Missense_Mutation p.P399T 0.21 tolerated(0.15) possibly_damaging(0.908) TCGA-F4-6807-01 22 31495058 31495058 G C SMTN Missense_Mutation p.G782R 0.33 tolerated(0.09) benign(0.336) TCGA-F4-6807-01 22 40760338 40760338 T C ADSL Missense_Mutation p.M387T 0.09 deleterious(0) benign(0.322) TCGA-F4-6807-01 22 45608037 45608037 C T KIAA0930 Intron 0.20 TCGA-F4-6807-01 2 130897790 130897790 G A CCDC74B Missense_Mutation p.R280C 0.24 deleterious(0) probably_damaging(0.996) TCGA-F4-6807-01 2 167262706 167262706 C G SCN7A Missense_Mutation p.S1478T 0.25 tolerated(0.15) possibly_damaging(0.883) TCGA-F4-6807-01 2 179641474 179641474 T A TTN Missense_Mutation p.K1706M 0.13 TCGA-F4-6807-01 2 185801682 185801682 G A ZNF804A Missense_Mutation p.C520Y 0.23 tolerated(1) benign(0) TCGA-F4-6807-01 2 216240029 216240029 G A FN1 Missense_Mutation p.T2022I 0.28 deleterious(0) probably_damaging(0.999) TCGA-F4-6807-01 2 219128221 219128221 G T GPBAR1 Silent p.G258G 0.19 TCGA-F4-6807-01 2 229890498 229890498 C A PID1 Missense_Mutation p.E199D 0.22 deleterious(0.05) benign(0.373) TCGA-F4-6807-01 2 239102971 239102971 T A ILKAP Silent p.G41G 0.31 TCGA-F4-6807-01 2 242815066 242815066 C T CXXC11 Silent p.H453H 0.33 TCGA-F4-6807-01 2 29274646 29274646 G A FAM179A Missense_Mutation p.R916Q 0.27 tolerated(0.24) benign(0.041) TCGA-F4-6807-01 2 29294358 29294358 G T C2orf71 Missense_Mutation p.L924M 0.27 tolerated(0.15) probably_damaging(0.957) TCGA-F4-6807-01 2 56098240 56098240 G T EFEMP1 Missense_Mutation p.T340N 0.32 deleterious(0.04) benign(0.108) TCGA-F4-6807-01 3 122145981 122145981 G A KPNA1 Nonsense_Mutation p.Q490* 0.13 TCGA-F4-6807-01 3 125877388 125877388 C A ALDH1L1 Missense_Mutation p.Q84H 0.25 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-F4-6807-01 3 126185149 126185149 G A ZXDC Silent p.S430S 0.19 TCGA-F4-6807-01 3 133495910 133495910 C T TF Silent p.N630N 0.32 TCGA-F4-6807-01 3 13363131 13363131 G T NUP210 Missense_Mutation p.S1707Y 0.26 tolerated(0.17) benign(0.049) TCGA-F4-6807-01 3 135869935 135869935 C T MSL2 3'UTR 0.27 TCGA-F4-6807-01 3 13672223 13672223 G A FBLN2 Missense_Mutation p.R998H 0.40 tolerated(0.13) probably_damaging(0.975) TCGA-F4-6807-01 3 142094723 142094723 C G XRN1 Missense_Mutation p.E965D 0.13 deleterious(0) probably_damaging(0.946) TCGA-F4-6807-01 3 142430805 142430805 G A PLS1 Missense_Mutation p.V616M 0.40 deleterious(0.01) probably_damaging(1) TCGA-F4-6807-01 3 148919930 148919930 C T CP Missense_Mutation p.R436Q 0.32 tolerated(0.58) benign(0.001) TCGA-F4-6807-01 3 164906521 164906521 C T SLITRK3 Missense_Mutation p.G700S 0.14 tolerated(1) probably_damaging(0.998) TCGA-F4-6807-01 3 178543464 178543464 C A KCNMB2 Missense_Mutation p.L49I 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-F4-6807-01 3 178916936 178916936 G A PIK3CA Missense_Mutation p.R108H 0.23 deleterious(0.03) probably_damaging(0.983) TCGA-F4-6807-01 3 178952074 178952074 G A PIK3CA Missense_Mutation p.M1043I 0.24 tolerated(0.11) benign(0.054) TCGA-F4-6807-01 3 39307074 39307074 C G CX3CR1 Silent p.G341G 0.25 TCGA-F4-6807-01 3 48476455 48476455 C A CCDC51 Missense_Mutation p.R28S 0.25 tolerated_low_confidence(0.38) benign(0.036) TCGA-F4-6807-01 3 7503342 7503342 A T GRM7 Missense_Mutation p.Q483L 0.25 deleterious(0.03) benign(0.149) TCGA-F4-6807-01 4 104115811 104115811 C T CENPE Missense_Mutation p.E170K 0.25 probably_damaging(0.999) TCGA-F4-6807-01 4 107114861 107114861 G T TBCK Missense_Mutation p.P655Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-F4-6807-01 4 126389779 126389779 G A FAT4 Silent p.T4004T 0.15 TCGA-F4-6807-01 4 156135174 156135174 C A NPY2R Missense_Mutation p.P28H 0.24 tolerated(0.21) possibly_damaging(0.706) TCGA-F4-6807-01 4 156135972 156135972 A C NPY2R Missense_Mutation p.D294A 0.24 deleterious(0.03) probably_damaging(0.983) TCGA-F4-6807-01 4 17590513 17590513 C A LAP3 Missense_Mutation p.P259Q 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 4 186997910 186997910 C G TLR3 Missense_Mutation p.P46R 0.17 deleterious(0) probably_damaging(0.971) TCGA-F4-6807-01 4 41750398 41750398 G A PHOX2B Missense_Mutation p.P77L 0.17 deleterious(0.02) probably_damaging(0.945) TCGA-F4-6807-01 4 54324822 54324822 A C FIP1L1 Missense_Mutation p.D501A 0.15 deleterious(0) probably_damaging(0.993) TCGA-F4-6807-01 4 57215590 57215590 G T AASDH Missense_Mutation p.P776H 0.28 deleterious(0.01) benign(0.21) TCGA-F4-6807-01 4 5966790 5966790 C T C4orf50 Silent p.P654P 0.32 TCGA-F4-6807-01 4 83348639 83348639 C A HNRNPDL Nonsense_Mutation p.E285* 0.07 TCGA-F4-6807-01 5 112770273 112770273 G T TSSK1B Silent p.I88I 0.32 TCGA-F4-6807-01 5 13701436 13701436 G A DNAH5 Missense_Mutation p.T4483M 0.19 probably_damaging(0.938) TCGA-F4-6807-01 5 137780111 137780111 T C REEP2 Missense_Mutation p.F64L 0.10 tolerated(0.32) possibly_damaging(0.686) TCGA-F4-6807-01 5 140182431 140182431 C T PCDHA3 Missense_Mutation p.T550M 0.36 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-F4-6807-01 5 140208483 140208483 G T PCDHA6 Silent p.R269R 0.24 TCGA-F4-6807-01 5 140481089 140481089 G T PCDHB3 Nonsense_Mutation p.E286* 0.22 TCGA-F4-6807-01 5 148998553 148998560 TGTGTGTG - ARHGEF37 Frame_Shift_Del p.L281Hfs*2 0.19 TCGA-F4-6807-01 5 150030851 150030851 G T SYNPO 3'UTR 0.32 TCGA-F4-6807-01 5 179734268 179734270 TCT - GFPT2 In_Frame_Del p.K527del 0.31 TCGA-F4-6807-01 5 446326 446326 G A EXOC3 Silent p.K2K 0.24 TCGA-F4-6807-01 6 108533336 108533336 C A SNX3 3'UTR 0.27 TCGA-F4-6807-01 6 152771775 152771775 T C SYNE1 Missense_Mutation p.K1127R 0.09 benign(0.008) TCGA-F4-6807-01 6 29797279 29797279 C T HLA-G Missense_Mutation p.A235V 0.23 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-F4-6807-01 6 30864487 30864487 G T DDR1 Missense_Mutation p.A572S 0.12 deleterious(0.01) possibly_damaging(0.891) TCGA-F4-6807-01 6 31846773 31846773 G A SLC44A4 5'UTR 0.43 TCGA-F4-6807-01 6 38709563 38709565 GCA - DNAH8 In_Frame_Del p.R181_M182delinsL 0.25 TCGA-F4-6807-01 6 49808659 49808659 C T CRISP1 Missense_Mutation p.R162H 0.27 tolerated(0.62) benign(0.029) TCGA-F4-6807-01 6 56399962 56399962 C T DST Silent p.S3010S 0.31 TCGA-F4-6807-01 6 75875408 75875408 C T COL12A1 Missense_Mutation p.R933H 0.21 possibly_damaging(0.79) TCGA-F4-6807-01 6 91254325 91254325 G A MAP3K7 Missense_Mutation p.R413C 0.33 deleterious(0.05) benign(0.247) TCGA-F4-6807-01 6 9908834 9908834 T A OFCC1 Missense_Mutation p.N87I 0.19 deleterious(0) probably_damaging(0.998) TCGA-F4-6807-01 7 100162651 100162651 G T AGFG2 3'UTR 0.20 TCGA-F4-6807-01 7 100225248 100225248 G T TFR2 Silent p.S573S 0.31 TCGA-F4-6807-01 7 138849891 138849891 G C TTC26 Missense_Mutation p.G269A 0.18 tolerated(0.17) benign(0.003) TCGA-F4-6807-01 7 148496427 148496427 G A CUL1 Missense_Mutation p.E733K 0.32 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 7 150840512 150840512 G T AGAP3 Silent p.G786G 0.44 TCGA-F4-6807-01 7 39247114 39247114 G T POU6F2 Nonsense_Mutation p.G136* 0.30 TCGA-F4-6807-01 7 42005037 42005037 C T GLI3 Missense_Mutation p.G1212S 0.26 tolerated_low_confidence(0.07) benign(0.033) TCGA-F4-6807-01 7 50607637 50607637 G A DDC Silent p.A97A 0.20 TCGA-F4-6807-01 7 76239369 76239369 A C POMZP3 3'UTR 0.14 TCGA-F4-6807-01 8 113277732 113277732 C A CSMD3 Missense_Mutation p.C3199F 0.15 deleterious(0) probably_damaging(0.986) TCGA-F4-6807-01 8 139647289 139647289 T A COL22A1 Silent p.P1191P 0.08 TCGA-F4-6807-01 8 23560114 23560114 G A NKX2-6 Silent p.Y252Y 0.37 TCGA-F4-6807-01 8 24342841 24342841 G A ADAM7 Missense_Mutation p.M309I 0.12 tolerated(0.21) benign(0.095) TCGA-F4-6807-01 8 41812840 41812840 G A KAT6A Silent p.S524S 0.20 TCGA-F4-6807-01 8 43218098 43218098 C G AC022616.1 3'Flank 0.18 TCGA-F4-6807-01 8 52320850 52320850 G A PXDNL Missense_Mutation p.R1112W 0.32 deleterious(0.04) benign(0.351) TCGA-F4-6807-01 8 67417688 67417688 G A C8orf46 Missense_Mutation p.D69N 0.53 tolerated(0.12) benign(0.181) TCGA-F4-6807-01 8 73849039 73849039 C T KCNB2 Silent p.D483D 0.25 TCGA-F4-6807-01 8 86385977 86385977 C A CA2 Missense_Mutation p.H96Q 0.21 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 9 117848913 117848913 C A TNC Missense_Mutation p.G366V 0.19 deleterious(0) possibly_damaging(0.847) TCGA-F4-6807-01 9 125748604 125748604 G A RABGAP1 Missense_Mutation p.E166K 0.32 deleterious(0) probably_damaging(0.982) TCGA-F4-6807-01 9 130533558 130533558 G A SH2D3C Intron 0.21 TCGA-F4-6807-01 9 133805250 133805250 C T FIBCD1 Missense_Mutation p.D86N 0.30 deleterious(0) probably_damaging(0.992) TCGA-F4-6807-01 9 27455131 27455131 C G MOB3B Missense_Mutation p.G140R 0.29 deleterious(0.02) benign(0.345) TCGA-F4-6807-01 9 33555732 33555734 AAA GAAG ANKRD18B Frame_Shift_Ins p.V688Sfs*3 0.22 TCGA-F4-6807-01 9 71628695 71628695 A G PRKACG Missense_Mutation p.V105A 0.27 deleterious(0) probably_damaging(0.982) TCGA-F4-6807-01 9 85597671 85597671 T G RASEF Missense_Mutation p.D715A 0.30 tolerated(0.3) benign(0.006) TCGA-F4-6807-01 9 90342608 90342608 C A CTSL Silent p.T30T 0.31 TCGA-F4-6807-01 X 107417732 107417732 C A COL4A6 Missense_Mutation p.G1027C 0.22 probably_damaging(1) TCGA-F4-6807-01 X 120183782 120183782 C T GLUD2 3'UTR 0.38 TCGA-F4-6807-01 X 127185063 127185063 A G ACTRT1 Missense_Mutation p.C375R 0.24 deleterious(0) probably_damaging(0.951) TCGA-F4-6807-01 X 128701243 128701243 C T OCRL Missense_Mutation p.R457C 0.34 tolerated(0.15) probably_damaging(1) TCGA-F4-6807-01 X 129201447 129201447 C A ELF4 Missense_Mutation p.G414V 0.18 tolerated(0.13) possibly_damaging(0.536) TCGA-F4-6807-01 X 144909908 144909908 C A TMEM257 3'UTR 0.18 TCGA-F4-6807-01 X 148072798 148072798 C A AFF2 Missense_Mutation p.T1291N 0.15 deleterious(0.04) possibly_damaging(0.72) TCGA-F4-6807-01 X 153236344 153236344 C A HCFC1 5'UTR 0.29 TCGA-F4-6807-01 X 17819336 17819336 G T RAI2 Silent p.P265P 0.47 TCGA-F4-6807-01 X 23945383 23945383 G T CXorf58 Missense_Mutation p.G151W 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6807-01 X 30873039 30873039 G A TAB3 Missense_Mutation p.T248M 0.12 deleterious(0.02) benign(0.387) TCGA-F4-6807-01 X 32429961 32429961 A C DMD Missense_Mutation p.L1381V 0.07 benign(0.019) TCGA-F4-6807-01 X 38271181 38271181 G T OTC Missense_Mutation p.D312Y 0.33 deleterious(0) probably_damaging(0.961) TCGA-F4-6807-01 X 47061848 47061848 A T UBA1 Missense_Mutation p.Q334L 0.21 deleterious(0.03) benign(0.002) TCGA-F4-6807-01 X 50377030 50377030 T C SHROOM4 Silent p.L681L 0.22 TCGA-F4-6807-01 X 69261770 69261770 T A AWAT2 Missense_Mutation p.Q297L 0.32 deleterious(0.01) benign(0.345) TCGA-F4-6807-01 X 72899159 72899159 A G CHIC1 Splice_Site p.X170_splice 0.10 TCGA-F4-6807-01 X 74523344 74523344 T A UPRT Nonstop_Mutation p.*310Kext*3 0.07 TCGA-F4-6807-01 X 76938313 76938313 G T ATRX Missense_Mutation p.S812Y 0.41 probably_damaging(0.996) TCGA-F4-6808-01 10 16911750 16911750 G A CUBN Silent p.C3113C 0.36 TCGA-F4-6808-01 10 26446443 26446443 C T MYO3A Missense_Mutation p.R1000W 0.30 deleterious(0) possibly_damaging(0.652) TCGA-F4-6808-01 10 26822412 26822412 T G APBB1IP Silent p.T286T 0.39 TCGA-F4-6808-01 10 27702718 27702718 G A PTCHD3 Silent p.T154T 0.30 TCGA-F4-6808-01 10 48388410 48388410 A G RBP3 Missense_Mutation p.V823A 0.10 deleterious(0) benign(0.418) TCGA-F4-6808-01 10 61831440 61831440 C T ANK3 Missense_Mutation p.D3067N 0.39 probably_damaging(0.978) TCGA-F4-6808-01 11 108200960 108200960 C T ATM Nonsense_Mutation p.R2443* 0.36 TCGA-F4-6808-01 11 118443150 118443150 G T ARCN1 5'Flank 0.51 TCGA-F4-6808-01 11 123484253 123484253 G A GRAMD1B Missense_Mutation p.R562Q 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-F4-6808-01 11 126432744 126432744 C T KIRREL3 Missense_Mutation p.R40Q 0.33 tolerated_low_confidence(0.1) possibly_damaging(0.885) TCGA-F4-6808-01 11 47360209 47360209 G A MYBPC3 Missense_Mutation p.R724W 0.47 deleterious(0) probably_damaging(0.999) TCGA-F4-6808-01 11 48347299 48347299 C A OR4C3 Missense_Mutation p.F269L 0.19 deleterious(0.04) benign(0.221) TCGA-F4-6808-01 11 60229825 60229825 T C MS4A1 5'UTR 0.08 TCGA-F4-6808-01 11 62349045 62349045 C A TUT1 Silent p.P172P 0.37 TCGA-F4-6808-01 11 67051368 67051368 C A ADRBK1 Missense_Mutation p.A480D 0.21 deleterious(0) probably_damaging(0.994) TCGA-F4-6808-01 12 111742083 111742083 C T CUX2 Missense_Mutation p.R275C 0.31 deleterious(0) probably_damaging(0.935) TCGA-F4-6808-01 12 112369383 112369383 C T TMEM116 3'UTR 0.27 TCGA-F4-6808-01 12 122361728 122361728 A T WDR66 Missense_Mutation p.E193D 0.32 tolerated(0.25) benign(0.002) TCGA-F4-6808-01 12 21661454 21661454 A G GOLT1B Missense_Mutation p.I85M 0.42 deleterious(0) benign(0.255) TCGA-F4-6808-01 12 26580975 26580975 C T ITPR2 Silent p.A2272A 0.40 TCGA-F4-6808-01 12 63195908 63195908 C T PPM1H Silent p.S148S 0.38 TCGA-F4-6808-01 12 85517939 85517939 C T LRRIQ1 Nonsense_Mutation p.R1217* 0.33 TCGA-F4-6808-01 12 98848907 98848907 C T SLC9A7P1 RNA 0.38 TCGA-F4-6808-01 13 36857806 36857806 A G CCDC169 Missense_Mutation p.L66P 0.11 deleterious(0.02) probably_damaging(0.931) TCGA-F4-6808-01 13 43469243 43469243 C T EPSTI1 Missense_Mutation p.V284I 0.27 deleterious(0) probably_damaging(0.996) TCGA-F4-6808-01 13 52857416 52857416 C T RP11-248G5.8 RNA 0.34 TCGA-F4-6808-01 14 22102491 22102491 G A OR10G2 Missense_Mutation p.R170C 0.13 deleterious(0.05) benign(0.022) TCGA-F4-6808-01 14 23887511 23887511 G A MYH7 Silent p.R1359R 0.14 TCGA-F4-6808-01 14 81943418 81943418 G A SEL1L Silent p.Y761Y 0.70 TCGA-F4-6808-01 14 86091613 86091613 G A FLRT2 3'UTR 0.72 TCGA-F4-6808-01 15 44048949 44048949 G T PDIA3 Nonsense_Mutation p.G117* 0.08 TCGA-F4-6808-01 16 1260620 1260620 C T CACNA1H Missense_Mutation p.T1336M 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6808-01 16 20361149 20361149 G A UMOD Intron 0.24 TCGA-F4-6808-01 16 3607612 3607612 C T NLRC3 Missense_Mutation p.R741K 0.31 tolerated(0.13) possibly_damaging(0.53) TCGA-F4-6808-01 16 3779692 3779692 G A CREBBP Missense_Mutation p.R1786C 0.13 unknown(0) TCGA-F4-6808-01 16 55855314 55855314 C T CES1 Missense_Mutation p.G220E 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6808-01 16 58545523 58545523 G A NDRG4 3'UTR 0.50 TCGA-F4-6808-01 16 67691326 67691326 G A RLTPR Missense_Mutation p.E1405K 0.21 tolerated_low_confidence(0.18) benign(0.003) TCGA-F4-6808-01 16 67915025 67915025 C T EDC4 Nonsense_Mutation p.R860* 0.33 TCGA-F4-6808-01 16 7743333 7743333 G A RBFOX1 Intron 0.40 TCGA-F4-6808-01 16 84256501 84256501 G T KCNG4 Silent p.P294P 0.09 TCGA-F4-6808-01 17 10547921 10547921 T C MYH3 Missense_Mutation p.K414E 0.50 deleterious(0) probably_damaging(0.98) TCGA-F4-6808-01 17 19750120 19750120 T A ULK2 Missense_Mutation p.K133N 0.09 deleterious(0) probably_damaging(0.962) TCGA-F4-6808-01 17 27371929 27371929 G A PIPOX Missense_Mutation p.R56Q 0.54 deleterious(0) probably_damaging(0.996) TCGA-F4-6808-01 17 27963740 27963740 C A SSH2 Missense_Mutation p.G476V 0.10 deleterious(0) probably_damaging(0.912) TCGA-F4-6808-01 17 33481723 33481723 G A UNC45B Missense_Mutation p.R201Q 0.35 deleterious(0.02) possibly_damaging(0.773) TCGA-F4-6808-01 17 37922563 37922563 A C IKZF3 Missense_Mutation p.V337G 0.39 tolerated(0.07) probably_damaging(0.987) TCGA-F4-6808-01 17 4083022 4083022 G A ANKFY1 Silent p.N839N 0.73 TCGA-F4-6808-01 17 42328865 42328865 G A SLC4A1 Silent p.S801S 0.37 TCGA-F4-6808-01 17 73094172 73094172 G A SLC16A5 Missense_Mutation p.R80Q 0.38 deleterious(0) probably_damaging(1) TCGA-F4-6808-01 17 73492835 73492835 C T KIAA0195 Missense_Mutation p.R1090C 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6808-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.50 TCGA-F4-6808-01 17 80545126 80545126 G A FOXK2 Silent p.A588A 0.30 TCGA-F4-6808-01 18 14778068 14778069 - C ANKRD30B Frame_Shift_Ins p.I472Tfs*16 0.08 TCGA-F4-6808-01 18 28935136 28935136 G A DSG1 Missense_Mutation p.G993R 0.10 tolerated(0.67) benign(0.024) TCGA-F4-6808-01 18 31325863 31325863 G A ASXL3 Silent p.P2017P 0.28 TCGA-F4-6808-01 18 65179085 65179085 C G DSEL Missense_Mutation p.G931R 0.62 deleterious(0) probably_damaging(0.993) TCGA-F4-6808-01 18 8253302 8253302 G A PTPRM Missense_Mutation p.V882M 0.62 tolerated(0.33) benign(0.016) TCGA-F4-6808-01 19 10132418 10132418 C A RDH8 Missense_Mutation p.P330Q 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F4-6808-01 19 12058086 12058086 G C ZNF700 Missense_Mutation p.V52L 0.18 deleterious(0.01) benign(0.446) TCGA-F4-6808-01 19 19338365 19338365 C G NCAN Missense_Mutation p.H646D 0.24 tolerated(0.68) benign(0.026) TCGA-F4-6808-01 19 36673495 36673495 C T ZNF565 Missense_Mutation p.R458H 0.35 tolerated(0.59) probably_damaging(0.926) TCGA-F4-6808-01 19 4323656 4323656 C T FSD1 3'UTR 0.26 TCGA-F4-6808-01 19 49937882 49937882 C A SLC17A7 Missense_Mutation p.R205L 0.44 deleterious(0) benign(0.109) TCGA-F4-6808-01 19 50812951 50812951 G A MYH14 Silent p.E2005E 0.31 TCGA-F4-6808-01 19 54973704 54973704 A G LENG9 Missense_Mutation p.S358P 0.12 tolerated(0.37) benign(0.001) TCGA-F4-6808-01 19 55824410 55824410 G A TMEM150B Silent p.H173H 0.51 TCGA-F4-6808-01 19 56466478 56466478 G A NLRP8 Missense_Mutation p.V352I 0.50 tolerated(0.52) benign(0.032) TCGA-F4-6808-01 19 56701925 56701925 C A ZSCAN5B Missense_Mutation p.E253D 0.17 tolerated(1) benign(0.01) TCGA-F4-6808-01 1 118462852 118462852 T C GDAP2 Silent p.R43R 0.35 TCGA-F4-6808-01 1 12082348 12082348 A G MIIP Missense_Mutation p.E104G 0.12 tolerated(0.21) benign(0.073) TCGA-F4-6808-01 1 151314833 151314833 C A RFX5 Missense_Mutation p.L560F 0.06 deleterious_low_confidence(0.04) possibly_damaging(0.456) TCGA-F4-6808-01 1 157516862 157516862 G A FCRL5 Missense_Mutation p.R60W 0.41 tolerated(0.46) benign(0.001) TCGA-F4-6808-01 1 169660884 169660884 G A SELL 3'UTR 0.32 TCGA-F4-6808-01 1 175299295 175299295 G A TNR Silent p.A1236A 0.25 TCGA-F4-6808-01 1 18149835 18149835 G A ACTL8 Missense_Mutation p.R111Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-F4-6808-01 1 196250003 196250003 A C KCNT2 Missense_Mutation p.L966R 0.31 tolerated(0.13) probably_damaging(0.972) TCGA-F4-6808-01 1 207966890 207966910 CCACTTACCAGACTAAATCAA - CD46 In_Frame_Del p.Y387_T393del 0.22 TCGA-F4-6808-01 1 22163446 22163446 C T HSPG2 Missense_Mutation p.V3402M 0.50 possibly_damaging(0.861) TCGA-F4-6808-01 1 228400250 228400250 C T OBSCN Missense_Mutation p.R256C 0.33 probably_damaging(0.999) TCGA-F4-6808-01 1 228476419 228476419 C A OBSCN Missense_Mutation p.P3819H 0.09 probably_damaging(0.968) TCGA-F4-6808-01 1 235505467 235505467 G A GGPS1 Missense_Mutation p.V95M 0.39 tolerated(0.06) benign(0.082) TCGA-F4-6808-01 1 237947164 237947164 C T RYR2 Missense_Mutation p.A4051V 0.33 possibly_damaging(0.459) TCGA-F4-6808-01 1 244006429 244006429 C A AKT3 Missense_Mutation p.R15M 0.38 deleterious(0) possibly_damaging(0.492) TCGA-F4-6808-01 1 24418786 24418786 G A MYOM3 Silent p.P370P 0.38 TCGA-F4-6808-01 1 248039448 248039448 C T TRIM58 Missense_Mutation p.T373I 0.30 tolerated(0.63) benign(0.008) TCGA-F4-6808-01 1 248789496 248789496 C T OR2T11 Missense_Mutation p.A312T 0.22 tolerated(0.48) benign(0.001) TCGA-F4-6808-01 1 39853766 39853766 T A MACF1 Silent p.S3022S 0.09 TCGA-F4-6808-01 1 53554646 53554646 C T SLC1A7 Missense_Mutation p.R456H 0.33 deleterious(0) probably_damaging(1) TCGA-F4-6808-01 1 6195434 6195434 G T CHD5 Missense_Mutation p.A909D 0.32 deleterious(0.01) possibly_damaging(0.838) TCGA-F4-6808-01 1 87805269 87805269 C T LMO4 Missense_Mutation p.A96V 0.29 deleterious(0.03) benign(0.202) TCGA-F4-6808-01 20 45354540 45354540 G C SLC2A10 Missense_Mutation p.G289R 0.10 tolerated(0.35) probably_damaging(0.921) TCGA-F4-6808-01 20 62250702 62250702 T C GMEB2 Missense_Mutation p.T17A 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-F4-6808-01 21 16338562 16338562 C A NRIP1 Missense_Mutation p.S651I 0.08 deleterious(0.02) possibly_damaging(0.452) TCGA-F4-6808-01 21 28296535 28296535 G A ADAMTS5 Missense_Mutation p.P877L 0.29 tolerated(0.36) benign(0.001) TCGA-F4-6808-01 21 34953652 34953652 A G DONSON Silent p.L436L 0.11 TCGA-F4-6808-01 21 47931412 47931412 C T DIP2A Silent p.V329V 0.21 TCGA-F4-6808-01 22 17590314 17590314 G A IL17RA Silent p.A735A 0.11 TCGA-F4-6808-01 22 19220120 19220120 A G CLTCL1 Missense_Mutation p.V508A 0.47 tolerated(0.13) benign(0.043) TCGA-F4-6808-01 22 32352579 32352579 G A YWHAH Missense_Mutation p.V181M 0.39 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-F4-6808-01 22 40803830 40803830 A G SGSM3 Missense_Mutation p.E521G 0.08 deleterious(0) probably_damaging(0.999) TCGA-F4-6808-01 22 44681451 44681451 G A KIAA1644 Silent p.P152P 0.50 TCGA-F4-6808-01 2 133554206 133554206 C T NCKAP5 Missense_Mutation p.V302M 0.09 tolerated(0.5) benign(0.001) TCGA-F4-6808-01 2 158401037 158401037 G T ACVR1C Missense_Mutation p.T288N 0.29 tolerated(0.05) possibly_damaging(0.465) TCGA-F4-6808-01 2 168104508 168104508 G T XIRP2 Missense_Mutation p.K2202N 0.38 benign(0.006) TCGA-F4-6808-01 2 179604955 179604955 T C TTN Silent p.E4335E 0.08 TCGA-F4-6808-01 2 179638934 179638934 G A TTN Missense_Mutation p.P2353S 0.27 TCGA-F4-6808-01 2 203417466 203417466 G A BMPR2 Missense_Mutation p.E481K 0.39 deleterious(0) probably_damaging(0.97) TCGA-F4-6808-01 2 216274398 216274398 G A FN1 Silent p.T729T 0.24 TCGA-F4-6808-01 2 218954907 218954907 G A RUFY4 3'UTR 0.21 TCGA-F4-6808-01 2 228560706 228560706 G A SLC19A3 Silent p.A357A 0.39 TCGA-F4-6808-01 2 228884327 228884327 G T SPHKAP Missense_Mutation p.P415T 0.10 tolerated(1) benign(0.01) TCGA-F4-6808-01 2 232325127 232325127 C T NCL Intron 0.10 TCGA-F4-6808-01 2 32800258 32800258 G T BIRC6 Missense_Mutation p.A4394S 0.07 benign(0.408) TCGA-F4-6808-01 2 74641833 74641833 G A C2orf81 Missense_Mutation p.R464C 0.40 tolerated(0.23) benign(0.038) TCGA-F4-6808-01 2 89417292 89417292 G A IGKV1-17 Missense_Mutation p.P6L 0.38 deleterious(0.04) benign(0.213) TCGA-F4-6808-01 3 100287740 100287740 C T TMEM45A Silent p.L221L 0.41 TCGA-F4-6808-01 3 101051730 101051730 G C SENP7 Intron 0.21 TCGA-F4-6808-01 3 112251490 112251490 G A ATG3 3'UTR 0.34 TCGA-F4-6808-01 3 12203087 12203087 C T TIMP4 5'Flank 0.35 TCGA-F4-6808-01 3 134960059 134960059 G A EPHB1 Missense_Mutation p.D806N 0.32 deleterious(0) probably_damaging(0.999) TCGA-F4-6808-01 3 160134153 160134153 G A SMC4 Missense_Mutation p.V463I 0.08 tolerated(0.22) benign(0.006) TCGA-F4-6808-01 3 171405369 171405369 G A PLD1 Silent p.A515A 0.37 TCGA-F4-6808-01 3 190321958 190321958 C T IL1RAP Nonsense_Mutation p.Q36* 0.36 TCGA-F4-6808-01 3 21792501 21792501 G A ZNF385D 5'UTR 0.38 TCGA-F4-6808-01 3 27346294 27346294 G T NEK10 Silent p.T324T 0.10 TCGA-F4-6808-01 3 45801444 45801444 C T SLC6A20 Missense_Mutation p.V512I 0.32 tolerated(0.86) benign(0.044) TCGA-F4-6808-01 3 64619473 64619473 G A ADAMTS9 Nonsense_Mutation p.R647* 0.37 TCGA-F4-6808-01 3 66502014 66502014 C T LRIG1 Missense_Mutation p.A112T 0.34 tolerated(0.5) benign(0.007) TCGA-F4-6808-01 3 8787286 8787286 C T CAV3 Silent p.T63T 0.09 TCGA-F4-6808-01 3 93611912 93611912 G T PROS1 Nonsense_Mutation p.Y340* 0.33 TCGA-F4-6808-01 4 100208109 100208109 C T ADH1A Missense_Mutation p.V53M 0.35 tolerated(0.18) possibly_damaging(0.484) TCGA-F4-6808-01 4 104511031 104511031 G A TACR3 Silent p.T402T 0.41 TCGA-F4-6808-01 4 110687903 110687903 T C CFI Silent p.K45K 0.07 TCGA-F4-6808-01 4 123813941 123813941 T A NUDT6 3'UTR 0.15 TCGA-F4-6808-01 4 126373473 126373473 C T FAT4 Nonsense_Mutation p.R3768* 0.35 TCGA-F4-6808-01 4 141074455 141074455 A G MAML3 Silent p.A9A 0.09 TCGA-F4-6808-01 4 151504585 151504585 T A MAB21L2 Missense_Mutation p.L135Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-F4-6808-01 4 56475337 56475337 C T NMU Missense_Mutation p.A77T 0.33 tolerated(0.39) benign(0.097) TCGA-F4-6808-01 4 71509584 71509584 C T ENAM Missense_Mutation p.P814L 0.12 deleterious(0.03) possibly_damaging(0.654) TCGA-F4-6808-01 5 112173820 112173820 T C APC Silent p.S843S 0.09 TCGA-F4-6808-01 5 112175324 112175324 G T APC Nonsense_Mutation p.E1345* 0.53 TCGA-F4-6808-01 5 129001227 129001227 A C ADAMTS19 Silent p.R815R 0.23 TCGA-F4-6808-01 5 140174613 140174613 G A PCDHA2 Missense_Mutation p.A22T 0.42 tolerated_low_confidence(0.4) benign(0.024) TCGA-F4-6808-01 5 140595171 140595171 G A PCDHB13 Silent p.P492P 0.40 TCGA-F4-6808-01 5 140755670 140755670 G A PCDHGA6 Missense_Mutation p.D674N 0.37 deleterious_low_confidence(0.02) benign(0.176) TCGA-F4-6808-01 5 140798939 140798939 G A PCDHGB7 Missense_Mutation p.V505M 0.12 deleterious(0.01) probably_damaging(0.955) TCGA-F4-6808-01 5 141693942 141693942 C A SPRY4 Silent p.V267V 0.10 TCGA-F4-6808-01 5 145872496 145872496 A T TCERG1 Missense_Mutation p.Y709F 0.55 tolerated(0.08) unknown(0) TCGA-F4-6808-01 5 15936809 15936809 C T FBXL7 Silent p.S330S 0.25 TCGA-F4-6808-01 5 169503023 169503023 C T DOCK2 Missense_Mutation p.R1601W 0.39 deleterious(0) probably_damaging(0.947) TCGA-F4-6808-01 5 178373424 178373424 C A ZNF454 Missense_Mutation p.P33H 0.09 deleterious(0.02) possibly_damaging(0.754) TCGA-F4-6808-01 5 26915832 26915832 C T CDH9 Silent p.S143S 0.34 TCGA-F4-6808-01 6 161519381 161519381 C T MAP3K4 Missense_Mutation p.A1199V 0.50 tolerated(0.65) benign(0.023) TCGA-F4-6808-01 6 33246149 33246149 C T B3GALT4 Missense_Mutation p.P318L 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6808-01 6 34664361 34664361 T C C6orf106 Missense_Mutation p.D7G 0.33 deleterious(0) probably_damaging(0.988) TCGA-F4-6808-01 6 38980061 38980061 G C DNAH8 Missense_Mutation p.R4264T 0.09 probably_damaging(1) TCGA-F4-6808-01 6 84904657 84904657 T A KIAA1009 Missense_Mutation p.K324N 0.06 tolerated(0.18) benign(0.023) TCGA-F4-6808-01 7 11457160 11457160 G T THSD7A Missense_Mutation p.P1152T 0.10 deleterious(0) probably_damaging(0.998) TCGA-F4-6808-01 7 120590843 120590843 G A ING3 5'UTR 0.19 TCGA-F4-6808-01 7 121616869 121616869 G T PTPRZ1 Missense_Mutation p.A195S 0.06 tolerated(0.13) possibly_damaging(0.872) TCGA-F4-6808-01 7 138749704 138749704 C A ZC3HAV1 Silent p.L638L 0.11 TCGA-F4-6808-01 7 151800482 151800482 C G GALNT11 Intron 0.27 TCGA-F4-6808-01 7 151805129 151805129 T C GALNT11 Missense_Mutation p.V240A 0.10 deleterious(0.01) possibly_damaging(0.79) TCGA-F4-6808-01 7 18975481 18975481 G T HDAC9 Silent p.V951V 0.06 TCGA-F4-6808-01 7 29874413 29874413 C A WIPF3 Missense_Mutation p.P25T 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-F4-6808-01 7 43546798 43546798 C T HECW1 Missense_Mutation p.R1232C 0.33 deleterious(0) probably_damaging(0.995) TCGA-F4-6808-01 7 98630732 98630732 G A SMURF1 Missense_Mutation p.A701V 0.43 deleterious(0.04) benign(0.069) TCGA-F4-6808-01 8 12884347 12884347 C T KIAA1456 3'UTR 0.46 TCGA-F4-6808-01 8 144811198 144811198 C A FAM83H Missense_Mutation p.G226C 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6808-01 8 28047199 28047199 G A ELP3 Missense_Mutation p.G534D 0.34 deleterious(0) probably_damaging(0.996) TCGA-F4-6808-01 8 42023030 42023030 C T AP3M2 Missense_Mutation p.P252L 0.06 deleterious(0) probably_damaging(1) TCGA-F4-6808-01 8 96272068 96272068 C G C8orf37 Missense_Mutation p.R125T 0.36 deleterious(0) possibly_damaging(0.888) TCGA-F4-6808-01 9 127572338 127572338 G A OLFML2A Missense_Mutation p.A536T 0.21 deleterious(0.03) possibly_damaging(0.798) TCGA-F4-6808-01 9 137642400 137642400 C T COL5A1 Missense_Mutation p.R503C 0.18 probably_damaging(0.999) TCGA-F4-6808-01 9 140036503 140036503 C T GRIN1 Silent p.N99N 0.28 TCGA-F4-6808-01 9 66469095 66469095 G C RP11-262H14.1 RNA 0.19 TCGA-F4-6808-01 9 96440038 96440038 C T PHF2 3'UTR 0.45 TCGA-F4-6808-01 X 129208065 129208065 T A ELF4 Missense_Mutation p.N100I 0.62 deleterious(0) probably_damaging(0.995) TCGA-F4-6808-01 X 144905636 144905636 G T SLITRK2 Missense_Mutation p.A565S 0.19 tolerated(0.26) benign(0.014) TCGA-F4-6808-01 X 153667407 153667407 G A GDI1 Silent p.K103K 0.18 TCGA-F4-6808-01 X 25033755 25033755 C G ARX Missense_Mutation p.G34R 0.20 deleterious(0) unknown(0) TCGA-F4-6808-01 X 30873485 30873485 T G TAB3 Silent p.V99V 0.11 TCGA-F4-6808-01 X 3248417 3248417 C A MXRA5 Silent p.V117V 0.19 TCGA-F4-6808-01 X 54982630 54982630 C G PFKFB1 Missense_Mutation p.E198D 0.08 benign(0.001) TCGA-F4-6808-01 X 75649101 75649101 G A MAGEE1 Missense_Mutation p.V260M 0.62 tolerated_low_confidence(0.19) possibly_damaging(0.623) TCGA-F4-6809-01 10 102748617 102748617 G A C10orf2 Missense_Mutation p.R217Q 0.09 tolerated(0.17) benign(0.266) TCGA-F4-6809-01 10 127344497 127344497 T C TEX36 Missense_Mutation p.K178R 0.23 tolerated_low_confidence(0.27) benign(0.004) TCGA-F4-6809-01 10 134980800 134980800 G A KNDC1 Intron 0.27 TCGA-F4-6809-01 10 30317775 30317775 A G KIAA1462 Silent p.F434F 0.16 TCGA-F4-6809-01 10 33067984 33067984 A G C10ORF68 Intron 0.09 TCGA-F4-6809-01 10 46969361 46969361 C A SYT15 Missense_Mutation p.A34S 0.10 tolerated(0.43) benign(0.007) TCGA-F4-6809-01 10 50190622 50190622 A G WDFY4 3'UTR 0.19 TCGA-F4-6809-01 10 73560414 73560414 T C CDH23 Missense_Mutation p.S222P 0.11 tolerated(0.54) benign(0) TCGA-F4-6809-01 10 85901370 85901370 G A GHITM Silent p.L38L 0.13 TCGA-F4-6809-01 10 97921304 97921304 G T ZNF518A RNA 0.20 TCGA-F4-6809-01 11 100064389 100064389 C T CNTN5 Silent p.I626I 0.14 TCGA-F4-6809-01 11 10622526 10622526 C T MRVI1 Silent p.A652A 0.40 TCGA-F4-6809-01 11 108382096 108382096 C A EXPH5 Nonsense_Mutation p.E1380* 0.22 TCGA-F4-6809-01 11 112041175 112041175 C T TEX12 Missense_Mutation p.L33F 0.29 tolerated(0.35) benign(0.006) TCGA-F4-6809-01 11 126305182 126305182 C T KIRREL3 Silent p.S523S 0.17 TCGA-F4-6809-01 11 17537823 17537823 A T USH1C Missense_Mutation p.Y409N 0.45 deleterious_low_confidence(0.02) benign(0.02) TCGA-F4-6809-01 11 17537825 17537825 A T USH1C Missense_Mutation p.F408Y 0.45 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-F4-6809-01 11 32610207 32610207 T A EIF3M Silent p.A81A 0.20 TCGA-F4-6809-01 11 32610208 32610208 T A EIF3M Missense_Mutation p.L82M 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-F4-6809-01 11 32610209 32610209 T A EIF3M Nonsense_Mutation p.L82* 0.20 TCGA-F4-6809-01 11 32663517 32663517 C A CCDC73 Splice_Site p.X350_splice 0.26 TCGA-F4-6809-01 11 55111493 55111493 T C OR4A16 Missense_Mutation p.Y273H 0.27 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-F4-6809-01 11 55135933 55135933 T C OR4A15 Missense_Mutation p.Y192H 0.14 deleterious_low_confidence(0.04) benign(0.092) TCGA-F4-6809-01 11 59554605 59554605 G A STX3 Silent p.E70E 0.09 TCGA-F4-6809-01 11 62363580 62363580 C T MTA2 Splice_Site p.X339_splice 0.24 TCGA-F4-6809-01 11 64567091 64567091 G A MAP4K2 Missense_Mutation p.P327L 0.12 tolerated(0.47) benign(0.001) TCGA-F4-6809-01 11 66472185 66472185 G C SPTBN2 Silent p.L854L 0.17 TCGA-F4-6809-01 11 7022295 7022295 C G ZNF214 Missense_Mutation p.E207Q 0.15 tolerated(0.42) benign(0) TCGA-F4-6809-01 11 75160090 75160090 G A GDPD5 Missense_Mutation p.P216S 0.08 deleterious(0) probably_damaging(1) TCGA-F4-6809-01 12 18242220 18242220 G A RERGL 5'UTR 0.07 TCGA-F4-6809-01 12 52757865 52757865 C T KRT85 Missense_Mutation p.R258H 0.19 tolerated(0.39) possibly_damaging(0.59) TCGA-F4-6809-01 12 57872994 57872994 G A ARHGAP9 Missense_Mutation p.R66C 0.23 deleterious(0.01) benign(0.024) TCGA-F4-6809-01 12 58141100 58141100 C G TSPAN31 3'UTR 0.10 TCGA-F4-6809-01 12 62954786 62954786 G T MON2 Missense_Mutation p.V1309F 0.38 deleterious(0) probably_damaging(0.99) TCGA-F4-6809-01 12 96368116 96368116 T C HAL Missense_Mutation p.Y623C 0.08 deleterious(0.01) possibly_damaging(0.827) TCGA-F4-6809-01 13 103384367 103384367 G T CCDC168 Missense_Mutation p.A1598E 0.12 deleterious(0) unknown(0) TCGA-F4-6809-01 13 36878391 36878391 T C SPG20 3'UTR 0.09 TCGA-F4-6809-01 13 73649967 73649967 C T KLF5 Silent p.N439N 0.20 TCGA-F4-6809-01 14 105409534 105409534 G A AHNAK2 Missense_Mutation p.A4085V 0.35 benign(0.055) TCGA-F4-6809-01 14 105409550 105409550 G T AHNAK2 Missense_Mutation p.L4080M 0.08 possibly_damaging(0.85) TCGA-F4-6809-01 14 105410206 105410206 G A AHNAK2 Missense_Mutation p.T3861M 0.43 benign(0.037) TCGA-F4-6809-01 14 20444681 20444681 T A OR4K15 Missense_Mutation p.V335D 0.35 deleterious_low_confidence(0.01) benign(0.006) TCGA-F4-6809-01 14 20444683 20444683 T A OR4K15 Missense_Mutation p.S336T 0.35 tolerated_low_confidence(0.15) benign(0.027) TCGA-F4-6809-01 14 23778186 23778186 C T BCL2L2 3'UTR 0.08 TCGA-F4-6809-01 14 44973621 44973621 T A FSCB 3'UTR 0.36 TCGA-F4-6809-01 14 47120614 47120614 T C RPL10L Missense_Mutation p.D109G 0.09 deleterious(0.01) probably_damaging(0.94) TCGA-F4-6809-01 15 39886640 39886640 A G THBS1 Silent p.R1168R 0.09 TCGA-F4-6809-01 15 50264941 50264941 G T ATP8B4 Silent p.R361R 0.39 TCGA-F4-6809-01 15 56726551 56726551 G C MNS1 Missense_Mutation p.Q352E 0.17 tolerated(0.19) possibly_damaging(0.519) TCGA-F4-6809-01 15 60850446 60850446 G A RORA Missense_Mutation p.A66V 0.33 tolerated_low_confidence(0.12) benign(0.003) TCGA-F4-6809-01 15 63918255 63918255 G A HERC1 Missense_Mutation p.R4402W 0.44 probably_damaging(0.997) TCGA-F4-6809-01 16 29996618 29996618 C G TAOK2 Missense_Mutation p.Q503E 0.25 deleterious(0.01) possibly_damaging(0.867) TCGA-F4-6809-01 16 30958105 30958105 G A FBXL19 Missense_Mutation p.G581D 0.34 deleterious(0) probably_damaging(0.991) TCGA-F4-6809-01 16 3639918 3639918 G A SLX4 Missense_Mutation p.R1241C 0.46 tolerated(0.05) benign(0.032) TCGA-F4-6809-01 16 417420 417420 C T MRPL28 3'UTR 0.10 TCGA-F4-6809-01 16 4987034 4987034 A T PPL Missense_Mutation p.F5I 0.08 deleterious(0.04) probably_damaging(0.994) TCGA-F4-6809-01 16 67399258 67399258 G A LRRC36 Missense_Mutation p.E252K 0.25 deleterious(0) benign(0.073) TCGA-F4-6809-01 16 89952292 89952292 A G TCF25 Missense_Mutation p.R156G 0.11 tolerated(0.07) benign(0.003) TCGA-F4-6809-01 17 15164059 15164059 C A PMP22 5'UTR 0.36 TCGA-F4-6809-01 17 45369870 45369870 C A ITGB3 Silent p.I542I 0.45 TCGA-F4-6809-01 17 46703206 46703206 C A HOXB9 Silent p.A142A 0.17 TCGA-F4-6809-01 17 7578535 7578535 T C TP53 Missense_Mutation p.K132R 0.33 deleterious(0.01) probably_damaging(1) TCGA-F4-6809-01 18 54339849 54339849 G A WDR7 Missense_Mutation p.V35I 0.35 tolerated(0.39) benign(0.023) TCGA-F4-6809-01 19 16345258 16345258 A T AP1M1 3'UTR 0.14 TCGA-F4-6809-01 19 19655182 19655182 G A CILP2 Missense_Mutation p.V610M 0.25 deleterious(0.04) possibly_damaging(0.685) TCGA-F4-6809-01 19 35862625 35862625 T A GPR42 Missense_Mutation p.W122R 0.10 tolerated(0.82) probably_damaging(1) TCGA-F4-6809-01 19 41116453 41116453 A G LTBP4 Missense_Mutation p.H634R 0.17 tolerated(0.67) benign(0.001) TCGA-F4-6809-01 19 42410088 42410088 C A ARHGEF1 Intron 0.17 TCGA-F4-6809-01 19 43512216 43512216 G C PSG11 3'UTR 0.26 TCGA-F4-6809-01 19 43576057 43576057 T A PSG2 Silent p.S253S 0.23 TCGA-F4-6809-01 19 49552094 49552094 G A CGB8 5'UTR 0.17 TCGA-F4-6809-01 19 51471375 51471375 G - KLK6 Intron 0.11 TCGA-F4-6809-01 19 53901212 53901212 C T ZNF765 5'UTR 0.19 TCGA-F4-6809-01 19 53912498 53912498 C G ZNF765 3'UTR 0.34 TCGA-F4-6809-01 19 57326354 57326354 C T PEG3 Silent p.E1152E 0.10 TCGA-F4-6809-01 19 7806766 7806766 C A CD209 3'UTR 0.14 TCGA-F4-6809-01 19 8154787 8154787 A G FBN3 Missense_Mutation p.S2081P 0.25 tolerated(0.06) possibly_damaging(0.52) TCGA-F4-6809-01 1 109336219 109336219 C A STXBP3 Missense_Mutation p.L327I 0.32 deleterious(0) probably_damaging(0.999) TCGA-F4-6809-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.22 tolerated(0.06) benign(0.006) TCGA-F4-6809-01 1 12253048 12253048 C T TNFRSF1B Missense_Mutation p.T227M 0.24 tolerated(0.23) benign(0.002) TCGA-F4-6809-01 1 12835962 12835962 A T PRAMEF12 Silent p.I188I 0.09 TCGA-F4-6809-01 1 152286636 152286636 T G FLG Missense_Mutation p.E242D 0.11 possibly_damaging(0.637) TCGA-F4-6809-01 1 160720187 160720187 G A SLAMF7 Nonsense_Mutation p.W248* 0.27 TCGA-F4-6809-01 1 160771692 160771692 C T LY9 Intron 0.28 TCGA-F4-6809-01 1 17380605 17380605 C G SDHB 5'UTR 0.25 TCGA-F4-6809-01 1 182636014 182636014 C T RGS8 Missense_Mutation p.A59T 0.11 tolerated(0.4) probably_damaging(0.994) TCGA-F4-6809-01 1 202990040 202990040 C G TMEM183A Missense_Mutation p.I303M 0.14 tolerated(0.06) possibly_damaging(0.758) TCGA-F4-6809-01 1 21221980 21221980 T C EIF4G3 Missense_Mutation p.T622A 0.21 tolerated(0.37) benign(0) TCGA-F4-6809-01 1 214638039 214638039 C T PTPN14 Silent p.T36T 0.15 TCGA-F4-6809-01 1 232942218 232942218 G C MAP10 Missense_Mutation p.K483N 0.22 tolerated(0.36) benign(0.006) TCGA-F4-6809-01 1 248551278 248551278 C T OR2T6 Silent p.Y123Y 0.24 TCGA-F4-6809-01 1 36438996 36438997 - A AGO3 Frame_Shift_Ins p.F182Ifs*9 0.18 TCGA-F4-6809-01 1 43224900 43224900 G T LEPRE1 Nonsense_Mutation p.Y260* 0.16 TCGA-F4-6809-01 1 43637892 43637892 C A EBNA1BP2 Intron 0.19 TCGA-F4-6809-01 1 45981466 45981466 C A PRDX1 Silent p.V40V 0.12 TCGA-F4-6809-01 1 47515118 47515118 C T CYP4X1 Nonsense_Mutation p.Q433* 0.09 TCGA-F4-6809-01 1 92712059 92712059 A C GLMN 3'UTR 0.07 TCGA-F4-6809-01 20 31372622 31372622 C T DNMT3B Missense_Mutation p.P88L 0.18 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-F4-6809-01 20 31421658 31421658 G A MAPRE1 Missense_Mutation p.G86D 0.07 deleterious(0.04) benign(0.213) TCGA-F4-6809-01 20 61596499 61596499 C T SLC17A9 Missense_Mutation p.T309M 0.19 tolerated(0.15) benign(0.104) TCGA-F4-6809-01 21 15399911 15399911 G T AP001347.6 RNA 0.21 TCGA-F4-6809-01 21 30959733 30959733 C A GRIK1 Silent p.V582V 0.21 TCGA-F4-6809-01 21 31812875 31812875 G T KRTAP15-1 Missense_Mutation p.C77F 0.31 tolerated(0.11) benign(0.089) TCGA-F4-6809-01 21 41560983 41560983 T A DSCAM Missense_Mutation p.I847F 0.12 deleterious(0) possibly_damaging(0.493) TCGA-F4-6809-01 21 46913456 46913456 C T COL18A1 Silent p.G953G 0.22 TCGA-F4-6809-01 22 39477008 39477008 A G APOBEC3G Missense_Mutation p.H81R 0.09 tolerated(0.45) benign(0.072) TCGA-F4-6809-01 22 39884361 39884361 A G MGAT3 Missense_Mutation p.T337A 0.37 tolerated(0.19) benign(0.063) TCGA-F4-6809-01 22 50546679 50546679 T G MOV10L1 Splice_Site p.X185_splice 0.10 TCGA-F4-6809-01 2 107040758 107040758 T G RGPD3 Missense_Mutation p.K1222T 0.17 tolerated(0.33) benign(0.003) TCGA-F4-6809-01 2 119914553 119914553 C A C1QL2 Missense_Mutation p.R230L 0.11 deleterious(0.03) possibly_damaging(0.693) TCGA-F4-6809-01 2 1426830 1426830 G T TPO Missense_Mutation p.E36D 0.16 tolerated(0.85) benign(0.001) TCGA-F4-6809-01 2 158114608 158114608 G A GALNT5 Missense_Mutation p.R5Q 0.16 deleterious(0.02) probably_damaging(0.93) TCGA-F4-6809-01 2 179641010 179641010 G A TTN Missense_Mutation p.R1861C 0.28 TCGA-F4-6809-01 2 189933587 189933587 C T COL5A2 Silent p.A394A 0.29 TCGA-F4-6809-01 2 196799483 196799483 T A DNAH7 Missense_Mutation p.E1101D 0.14 deleterious(0) probably_damaging(1) TCGA-F4-6809-01 2 197172735 197172735 G A HECW2 Nonsense_Mutation p.R837* 0.31 TCGA-F4-6809-01 2 204161683 204161683 T A CYP20A1 3'UTR 0.19 TCGA-F4-6809-01 2 220421256 220421256 C T OBSL1 Missense_Mutation p.R1419Q 0.10 tolerated(0.1) benign(0.168) TCGA-F4-6809-01 2 27324725 27324725 G A CGREF1 Missense_Mutation p.T125I 0.33 deleterious(0.02) possibly_damaging(0.723) TCGA-F4-6809-01 2 48898813 48898813 T A STON1-GTF2A1L Nonsense_Mutation p.Y1145* 0.22 TCGA-F4-6809-01 2 55200290 55200290 T C RTN4 3'UTR 0.08 TCGA-F4-6809-01 2 61147198 61147198 G C REL Missense_Mutation p.K292N 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6809-01 2 71043578 71043578 T C CLEC4F Missense_Mutation p.N312S 0.26 tolerated(0.13) benign(0.417) TCGA-F4-6809-01 2 74042837 74042837 C G C2orf78 Missense_Mutation p.S496C 0.13 tolerated(0.06) benign(0.258) TCGA-F4-6809-01 2 77746912 77746912 G A LRRTM4 Missense_Mutation p.T28M 0.30 tolerated(0.07) benign(0.099) TCGA-F4-6809-01 2 99260500 99260500 C T MGAT4A Silent p.A302A 0.30 TCGA-F4-6809-01 3 113334997 113334998 - A SIDT1 Frame_Shift_Ins p.Q674Afs*3 0.11 TCGA-F4-6809-01 3 121413687 121413687 C A GOLGB1 Nonsense_Mutation p.E1895* 0.17 TCGA-F4-6809-01 3 122420235 122420235 T C PARP14 Missense_Mutation p.F945S 0.24 deleterious(0) possibly_damaging(0.85) TCGA-F4-6809-01 3 122630793 122630793 C T SEMA5B Missense_Mutation p.R1061H 0.24 deleterious(0) probably_damaging(0.955) TCGA-F4-6809-01 3 126260765 126260765 C A CHST13 Missense_Mutation p.L124M 0.28 tolerated(0.64) benign(0.228) TCGA-F4-6809-01 3 126260766 126260766 T G CHST13 Missense_Mutation p.L124R 0.29 deleterious(0) possibly_damaging(0.837) TCGA-F4-6809-01 3 129177485 129177485 C G IFT122 Missense_Mutation p.I79M 0.23 deleterious(0) possibly_damaging(0.879) TCGA-F4-6809-01 3 152884511 152884511 A C RAP2B 3'UTR 0.09 TCGA-F4-6809-01 3 158315984 158315984 G A MLF1 Missense_Mutation p.R163Q 0.29 tolerated(0.21) benign(0.085) TCGA-F4-6809-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.22 deleterious(0.02) probably_damaging(0.959) TCGA-F4-6809-01 3 180327538 180327538 G A TTC14 Silent p.R507R 0.09 TCGA-F4-6809-01 3 184003305 184003305 G C ECE2 Missense_Mutation p.K514N 0.11 tolerated(0.1) probably_damaging(1) TCGA-F4-6809-01 3 47144841 47144841 G T SETD2 Missense_Mutation p.Q1638K 0.16 deleterious(0) benign(0.243) TCGA-F4-6809-01 3 48511233 48511233 C T SHISA5 Silent p.A108A 0.16 TCGA-F4-6809-01 3 48614195 48614195 C T COL7A1 Missense_Mutation p.G1872S 0.18 unknown(0) TCGA-F4-6809-01 3 63264033 63264033 G A SYNPR 5'UTR 0.44 TCGA-F4-6809-01 3 63264088 63264088 G C SYNPR 5'UTR 0.36 TCGA-F4-6809-01 3 65422924 65422924 T C MAGI1 Splice_Site p.X424_splice 0.08 TCGA-F4-6809-01 3 77147246 77147246 C T ROBO2 Missense_Mutation p.T64M 0.33 deleterious(0) unknown(0) TCGA-F4-6809-01 4 111441489 111441489 G C ENPEP Missense_Mutation p.R565T 0.17 tolerated(0.32) benign(0.001) TCGA-F4-6809-01 4 151505801 151505801 C A MAB21L2 3'UTR 0.25 TCGA-F4-6809-01 4 165961327 165961327 T G TRIM60 Missense_Mutation p.F35V 0.12 deleterious(0) possibly_damaging(0.896) TCGA-F4-6809-01 4 177049961 177049961 A C WDR17 Missense_Mutation p.K312T 0.06 deleterious(0.02) possibly_damaging(0.653) TCGA-F4-6809-01 4 36296556 36296556 T C DTHD1 Missense_Mutation p.L388S 0.27 deleterious(0) probably_damaging(1) TCGA-F4-6809-01 4 39000352 39000352 T C TMEM156 Missense_Mutation p.D89G 0.21 tolerated(0.62) benign(0.006) TCGA-F4-6809-01 4 41016163 41016163 C G APBB2 Missense_Mutation p.G91A 0.11 tolerated(0.36) benign(0.008) TCGA-F4-6809-01 4 71275723 71275723 C A PROL1 Silent p.S226S 0.27 TCGA-F4-6809-01 4 71509419 71509419 T C ENAM Missense_Mutation p.L759P 0.10 tolerated(0.19) benign(0.043) TCGA-F4-6809-01 4 8235096 8235096 C G SH3TC1 Nonsense_Mutation p.Y1046* 0.17 TCGA-F4-6809-01 5 112174110 112174110 C A APC Nonsense_Mutation p.S940* 0.19 TCGA-F4-6809-01 5 118877647 118877647 C T HSD17B4 Silent p.S748S 0.09 TCGA-F4-6809-01 5 138758454 138758454 A G DNAJC18 Missense_Mutation p.I241T 0.07 deleterious(0) benign(0.282) TCGA-F4-6809-01 5 140176393 140176393 C T PCDHA2 Missense_Mutation p.T615I 0.12 tolerated_low_confidence(0.06) benign(0.051) TCGA-F4-6809-01 5 140481796 140481796 C T PCDHB3 Silent p.Y521Y 0.31 TCGA-F4-6809-01 5 140565053 140565053 T G PCDHB16 3'UTR 0.13 TCGA-F4-6809-01 5 140764616 140764616 G A PCDHGA7 Missense_Mutation p.R717Q 0.30 tolerated_low_confidence(0.08) benign(0.06) TCGA-F4-6809-01 5 148679893 148679893 G A AFAP1L1 Missense_Mutation p.V69M 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-F4-6809-01 5 169116272 169116272 C T DOCK2 Nonsense_Mutation p.R260* 0.23 TCGA-F4-6809-01 5 170738615 170738615 C T TLX3 3'UTR 0.37 TCGA-F4-6809-01 5 32074104 32074104 C A PDZD2 Nonsense_Mutation p.C964* 0.21 TCGA-F4-6809-01 5 71495672 71495672 C A MAP1B Missense_Mutation p.P2164T 0.13 probably_damaging(0.995) TCGA-F4-6809-01 5 71654084 71654084 G T PTCD2 Missense_Mutation p.D333Y 0.28 deleterious(0) benign(0.405) TCGA-F4-6809-01 5 76709130 76709130 T C PDE8B Missense_Mutation p.V636A 0.26 deleterious(0.02) probably_damaging(0.972) TCGA-F4-6809-01 6 100061114 100061114 G A PRDM13 Silent p.A201A 0.22 TCGA-F4-6809-01 6 10626834 10626835 - A GCNT2 Frame_Shift_Ins p.F402Ifs*6 0.15 TCGA-F4-6809-01 6 119136007 119136007 C A MCM9 Nonsense_Mutation p.E1138* 0.10 TCGA-F4-6809-01 6 144814444 144814444 A G UTRN Missense_Mutation p.Y1482C 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-F4-6809-01 6 146127060 146127060 C T FBXO30 Missense_Mutation p.S161N 0.34 tolerated(0.12) benign(0.005) TCGA-F4-6809-01 6 155569144 155569144 C G TIAM2 Missense_Mutation p.D1221E 0.15 deleterious(0) benign(0.427) TCGA-F4-6809-01 6 163987807 163987807 G A QKI Missense_Mutation p.R330K 0.15 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-F4-6809-01 6 167424308 167424308 T G FGFR1OP Missense_Mutation p.L149R 0.12 tolerated(0.23) possibly_damaging(0.498) TCGA-F4-6809-01 6 28540488 28540488 G A SCAND3 Missense_Mutation p.R1060W 0.14 tolerated(0.12) benign(0.002) TCGA-F4-6809-01 7 140301576 140301576 C T DENND2A Missense_Mutation p.G208R 0.28 tolerated(0.37) benign(0.002) TCGA-F4-6809-01 7 150417672 150417672 G A GIMAP1 Missense_Mutation p.G194S 0.36 deleterious(0.02) probably_damaging(0.918) TCGA-F4-6809-01 7 19761554 19761554 G A TMEM196 3'UTR 0.50 TCGA-F4-6809-01 7 21658796 21658796 C T DNAH11 Nonsense_Mutation p.R1450* 0.27 TCGA-F4-6809-01 7 48314074 48314074 T A ABCA13 Missense_Mutation p.L1604H 0.08 possibly_damaging(0.847) TCGA-F4-6809-01 7 48378036 48378036 A T ABCA13 Missense_Mutation p.E3396D 0.32 possibly_damaging(0.799) TCGA-F4-6809-01 7 56022934 56022935 - A MRPS17 3'UTR 0.23 TCGA-F4-6809-01 7 65432797 65432797 A C GUSB Missense_Mutation p.F525C 0.27 deleterious(0.01) benign(0.262) TCGA-F4-6809-01 7 95606854 95606854 C A DYNC1I1 Missense_Mutation p.S191Y 0.25 tolerated(0.54) benign(0.048) TCGA-F4-6809-01 8 120638857 120638857 A C ENPP2 Missense_Mutation p.C80W 0.25 deleterious(0) probably_damaging(1) TCGA-F4-6809-01 8 1497698 1497698 C T DLGAP2 Missense_Mutation p.T280M 0.29 tolerated(0.05) possibly_damaging(0.776) TCGA-F4-6809-01 8 39871208 39871208 G T IDO2 Missense_Mutation p.G295C 0.12 tolerated(0.05) probably_damaging(0.999) TCGA-F4-6809-01 8 53055599 53055599 G T ST18 Missense_Mutation p.P687T 0.17 tolerated(0.28) benign(0.008) TCGA-F4-6809-01 8 68170396 68170396 G T ARFGEF1 Missense_Mutation p.R789S 0.24 deleterious(0) probably_damaging(0.999) TCGA-F4-6809-01 9 101825342 101825342 T G COL15A1 Missense_Mutation p.L1201R 0.16 tolerated(0.35) benign(0.151) TCGA-F4-6809-01 9 114449111 114449111 C T C9orf84 Missense_Mutation p.R1425H 0.29 deleterious(0) probably_damaging(0.999) TCGA-F4-6809-01 9 117130764 117130764 A G AKNA Missense_Mutation p.W510R 0.12 tolerated(0.39) benign(0.012) TCGA-F4-6809-01 9 125563289 125563289 C T OR1K1 Silent p.R296R 0.20 TCGA-F4-6809-01 9 129458758 129458758 G A LMX1B 3'UTR 0.22 TCGA-F4-6809-01 9 137021685 137021685 G C WDR5 Missense_Mutation p.E292Q 0.13 tolerated(0.11) benign(0.127) TCGA-F4-6809-01 9 139333316 139333316 G A INPP5E Missense_Mutation p.P186S 0.13 tolerated(1) benign(0.002) TCGA-F4-6809-01 X 108631836 108631836 G T GUCY2F Silent p.G946G 0.27 TCGA-F4-6809-01 X 118724688 118724688 T G NKRF Missense_Mutation p.K249Q 0.10 deleterious(0.05) possibly_damaging(0.548) TCGA-F4-6809-01 X 125298907 125298907 G A DCAF12L2 Missense_Mutation p.P334L 0.47 tolerated(0.58) benign(0.003) TCGA-F4-6809-01 X 129629239 129629239 C G RP1-274L7.1 Intron 0.06 TCGA-F4-6809-01 X 13780493 13780493 C T OFD1 Silent p.D806D 0.20 TCGA-F4-6809-01 X 154294267 154294267 C T MTCP1 Missense_Mutation p.G7R 0.18 tolerated(0.41) probably_damaging(1) TCGA-F4-6809-01 X 155232585 155232585 A C IL9R Missense_Mutation p.S15R 0.15 tolerated(0.31) benign(0.023) TCGA-F4-6809-01 X 17743912 17743912 C T NHS Silent p.G541G 0.30 TCGA-F4-6809-01 X 27997249 27997249 G T DCAF8L1 3'UTR 0.27 TCGA-F4-6809-01 X 30236712 30236712 G T MAGEB2 Missense_Mutation p.Q5H 0.09 tolerated(0.18) benign(0.405) TCGA-F4-6809-01 X 34148592 34148592 T C FAM47A Missense_Mutation p.R602G 0.12 deleterious(0) probably_damaging(0.943) TCGA-F4-6809-01 X 48339911 48339911 G C FTSJ1 Missense_Mutation p.S189T 0.16 deleterious(0) probably_damaging(0.999) TCGA-F4-6809-01 X 54956879 54956879 G T TRO Missense_Mutation p.G1241V 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-F4-6809-01 X 77254011 77254011 C T ATP7A Missense_Mutation p.S458L 0.27 tolerated(0.26) benign(0.005) TCGA-F4-6809-01 X 91090554 91090554 G T PCDH11X Silent p.V17V 0.06 TCGA-F4-6854-01 10 101964895 101964895 C T CHUK Silent p.V431V 0.09 TCGA-F4-6854-01 10 132891352 132891352 G A TCERG1L 3'UTR 0.47 TCGA-F4-6854-01 10 133106620 133106620 G A TCERG1L Missense_Mutation p.T175M 0.16 tolerated(0.17) benign(0.032) TCGA-F4-6854-01 10 135107110 135107110 C T TUBGCP2 Silent p.V288V 0.51 TCGA-F4-6854-01 10 135439064 135439065 - T FRG2B Frame_Shift_Ins p.S126Ifs*11 0.30 TCGA-F4-6854-01 10 24790423 24790423 G A KIAA1217 Silent p.R650R 0.45 TCGA-F4-6854-01 10 92680018 92680018 A C ANKRD1 Missense_Mutation p.L39V 0.30 tolerated(0.27) benign(0.23) TCGA-F4-6854-01 11 119211081 119211081 G C C1QTNF5 Silent p.L9L 0.19 TCGA-F4-6854-01 11 1254370 1254375 CTGCAC - MUC5B In_Frame_Del p.T733_C734del 0.50 TCGA-F4-6854-01 11 133794795 133794795 G T IGSF9B Missense_Mutation p.T680K 0.23 tolerated(0.15) benign(0.446) TCGA-F4-6854-01 11 19077237 19077237 G A MRGPRX2 Missense_Mutation p.P238L 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-F4-6854-01 11 56185521 56185521 A G OR5R1 Missense_Mutation p.L63P 0.16 deleterious(0) probably_damaging(0.999) TCGA-F4-6854-01 11 61059032 61059032 G A VWCE Missense_Mutation p.H43Y 0.62 deleterious(0) probably_damaging(0.998) TCGA-F4-6854-01 11 65793355 65793355 C T CATSPER1 Missense_Mutation p.V166M 0.24 tolerated(0.24) benign(0.003) TCGA-F4-6854-01 11 7111300 7111300 G A RBMXL2 Missense_Mutation p.D317N 0.39 tolerated(0.07) possibly_damaging(0.555) TCGA-F4-6854-01 11 93431527 93431527 T C KIAA1731 Missense_Mutation p.L1150P 0.26 tolerated(0.05) benign(0.027) TCGA-F4-6854-01 12 12630633 12630633 G A DUSP16 Nonsense_Mutation p.Q378* 0.30 TCGA-F4-6854-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.36 deleterious(0) possibly_damaging(0.479) TCGA-F4-6854-01 12 53069094 53069094 G A KRT1 Silent p.G606G 0.40 TCGA-F4-6854-01 12 5744399 5744399 T C ANO2 Missense_Mutation p.T579A 0.39 deleterious(0.04) probably_damaging(0.997) TCGA-F4-6854-01 13 101712232 101712232 C T NALCN Missense_Mutation p.E1615K 0.44 tolerated(0.52) benign(0.006) TCGA-F4-6854-01 13 103385224 103385224 G A CCDC168 Silent p.D1312D 0.20 TCGA-F4-6854-01 13 36909342 36909342 G A SPG20 Missense_Mutation p.P209L 0.30 deleterious(0) possibly_damaging(0.639) TCGA-F4-6854-01 13 96264407 96264407 G A DZIP1 Nonsense_Mutation p.R400* 0.13 TCGA-F4-6854-01 14 61112991 61112991 C T SIX1 3'UTR 0.78 TCGA-F4-6854-01 14 76248917 76248917 G A TTLL5 Splice_Site p.X868_splice 0.09 TCGA-F4-6854-01 15 100214632 100214632 T C MEF2A Missense_Mutation p.V144A 0.12 tolerated(0.07) probably_damaging(0.932) TCGA-F4-6854-01 15 101717511 101717511 G A CHSY1 3'UTR 0.50 TCGA-F4-6854-01 15 20488908 20488908 A T CHEK2P2 RNA 0.07 TCGA-F4-6854-01 16 30747877 30747877 C T SRCAP Missense_Mutation p.R2314C 0.17 probably_damaging(0.973) TCGA-F4-6854-01 16 30977637 30977637 G T SETD1A Missense_Mutation p.R812L 0.31 possibly_damaging(0.726) TCGA-F4-6854-01 16 3726046 3726046 G A TRAP1 Missense_Mutation p.R269W 0.12 deleterious(0.02) possibly_damaging(0.696) TCGA-F4-6854-01 16 4802747 4802747 C T ZNF500 Missense_Mutation p.C358Y 0.27 deleterious(0) probably_damaging(0.996) TCGA-F4-6854-01 16 67432484 67432484 A G ZDHHC1 Missense_Mutation p.I269T 0.37 deleterious(0.04) possibly_damaging(0.906) TCGA-F4-6854-01 16 77353780 77353780 G A ADAMTS18 Missense_Mutation p.A833V 0.26 deleterious(0) benign(0.344) TCGA-F4-6854-01 16 85697089 85697089 C T GSE1 Missense_Mutation p.T838M 0.29 deleterious(0.04) possibly_damaging(0.611) TCGA-F4-6854-01 17 10317532 10317532 G T MYH8 Missense_Mutation p.Q329K 0.30 tolerated(0.97) benign(0.004) TCGA-F4-6854-01 17 13399605 13399605 C T HS3ST3A1 Missense_Mutation p.R377H 0.34 deleterious(0.01) benign(0.088) TCGA-F4-6854-01 17 29220387 29220387 T A ATAD5 Missense_Mutation p.F1506I 0.17 deleterious(0) possibly_damaging(0.792) TCGA-F4-6854-01 17 29220388 29220388 T A ATAD5 Missense_Mutation p.F1506Y 0.18 deleterious(0.01) probably_damaging(0.911) TCGA-F4-6854-01 17 29220389 29220389 T A ATAD5 Missense_Mutation p.F1506L 0.18 tolerated(0.09) benign(0.047) TCGA-F4-6854-01 17 71420138 71420138 C T SDK2 Silent p.T559T 0.35 TCGA-F4-6854-01 17 72832675 72832675 G - TMEM104 Frame_Shift_Del p.D448Tfs*197 0.22 TCGA-F4-6854-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.44 deleterious(0) probably_damaging(0.997) TCGA-F4-6854-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.41 tolerated(0.11) benign(0.308) TCGA-F4-6854-01 17 7749238 7749238 T C KDM6B Silent p.P62P 0.12 TCGA-F4-6854-01 17 7814170 7814170 C A CHD3 Nonsense_Mutation p.Y1979* 0.40 TCGA-F4-6854-01 17 78327916 78327916 G A RNF213 Missense_Mutation p.R3559Q 0.26 benign(0.241) TCGA-F4-6854-01 18 3742412 3742412 G A DLGAP1 Missense_Mutation p.P425S 0.55 tolerated(0.29) benign(0.178) TCGA-F4-6854-01 18 44260319 44260319 C G ST8SIA5 Missense_Mutation p.A273P 0.18 benign(0.003) TCGA-F4-6854-01 19 1043343 1043343 C T ABCA7 Silent p.C267C 0.45 TCGA-F4-6854-01 19 15586605 15586605 G A PGLYRP2 Silent p.P292P 0.33 TCGA-F4-6854-01 19 1796744 1796744 C T ATP8B3 Silent p.T573T 0.39 TCGA-F4-6854-01 19 24309357 24309357 A G ZNF254 Silent p.K185K 0.29 TCGA-F4-6854-01 19 40392185 40392185 G A FCGBP Missense_Mutation p.P2734L 0.18 possibly_damaging(0.537) TCGA-F4-6854-01 19 42083574 42083574 C T CEACAM21 Silent p.N29N 0.33 TCGA-F4-6854-01 19 43679416 43679416 G A PSG5 Silent p.N305N 0.33 TCGA-F4-6854-01 19 49593594 49593594 A G SNRNP70 Missense_Mutation p.E65G 0.27 deleterious(0) probably_damaging(0.997) TCGA-F4-6854-01 19 51563757 51563757 G A KLK13 Missense_Mutation p.R58W 0.31 deleterious(0) benign(0.006) TCGA-F4-6854-01 19 55421418 55421418 C A NCR1 Silent p.T225T 0.35 TCGA-F4-6854-01 19 55450955 55450955 G A NLRP7 Missense_Mutation p.A411V 0.24 tolerated(0.15) benign(0.019) TCGA-F4-6854-01 19 56373525 56373525 C T NLRP4 Missense_Mutation p.A729V 0.30 tolerated(0.48) benign(0.003) TCGA-F4-6854-01 1 112270158 112270158 C A FAM212B Missense_Mutation p.R109M 0.24 tolerated(0.09) possibly_damaging(0.784) TCGA-F4-6854-01 1 12023638 12023638 G T PLOD1 Missense_Mutation p.A383S 0.33 tolerated(0.6) benign(0.015) TCGA-F4-6854-01 1 12091837 12091837 G A MIIP Missense_Mutation p.R380Q 0.34 tolerated(0.67) unknown(0) TCGA-F4-6854-01 1 1372656 1372656 G C VWA1 Missense_Mutation p.W141C 0.19 deleterious(0) probably_damaging(1) TCGA-F4-6854-01 1 142804515 142804515 C T RP11-423O2.5 RNA 0.33 TCGA-F4-6854-01 1 147091370 147091377 TAGCGTGG - BCL9 Frame_Shift_Del p.I470Tfs*9 0.27 TCGA-F4-6854-01 1 170967327 170967327 C T MROH9 Missense_Mutation p.P503L 0.30 tolerated(0.21) possibly_damaging(0.778) TCGA-F4-6854-01 1 181453005 181453005 C T CACNA1E Missense_Mutation p.T42M 0.29 deleterious(0) benign(0.002) TCGA-F4-6854-01 1 196882002 196882002 G T CFHR4 Missense_Mutation p.G376V 0.05 deleterious(0.01) probably_damaging(0.953) TCGA-F4-6854-01 1 197087062 197087062 C A ASPM Missense_Mutation p.A1308S 0.05 tolerated(0.66) benign(0.004) TCGA-F4-6854-01 1 206765025 206765025 C T EIF2D 3'UTR 0.31 TCGA-F4-6854-01 1 220267731 220267731 G A IARS2 Missense_Mutation p.G58D 0.14 deleterious(0.02) benign(0.147) TCGA-F4-6854-01 1 222737442 222737442 T G TAF1A Missense_Mutation p.H307P 0.26 deleterious(0) probably_damaging(1) TCGA-F4-6854-01 1 228467958 228467958 T C OBSCN Missense_Mutation p.L3010P 0.38 probably_damaging(1) TCGA-F4-6854-01 1 243507569 243507569 A C SDCCAG8 Missense_Mutation p.E470A 0.24 deleterious(0.05) probably_damaging(0.987) TCGA-F4-6854-01 1 27097639 27097640 - G ARID1A Frame_Shift_Ins p.A1077Gfs*28 0.23 TCGA-F4-6854-01 1 46546384 46546384 C A PIK3R3 Missense_Mutation p.V49F 0.39 tolerated(0.75) benign(0.035) TCGA-F4-6854-01 1 4771973 4771973 C T AJAP1 Missense_Mutation p.R15C 0.28 tolerated(0.19) benign(0.009) TCGA-F4-6854-01 1 6185646 6185646 G A CHD5 Silent p.L1400L 0.33 TCGA-F4-6854-01 1 70144110 70144110 A C LRRC7 Missense_Mutation p.S17R 0.35 deleterious_low_confidence(0) benign(0.307) TCGA-F4-6854-01 1 86374324 86374324 C A COL24A1 Missense_Mutation p.G894V 0.23 deleterious(0) probably_damaging(1) TCGA-F4-6854-01 1 91726687 91726687 A G HFM1 3'UTR 0.21 TCGA-F4-6854-01 1 94546069 94546069 C G ABCA4 Missense_Mutation p.R355T 0.18 tolerated(0.25) possibly_damaging(0.71) TCGA-F4-6854-01 20 1961090 1961090 C T PDYN Missense_Mutation p.R215H 0.50 deleterious(0) probably_damaging(0.999) TCGA-F4-6854-01 20 30904350 30904350 C T KIF3B Silent p.I509I 0.14 TCGA-F4-6854-01 20 62195603 62195603 C T HELZ2 Missense_Mutation p.M1524I 0.15 deleterious(0) probably_damaging(0.996) TCGA-F4-6854-01 21 31661641 31661641 T A KRTAP25-1 Silent p.I56I 0.27 TCGA-F4-6854-01 21 41710207 41710207 A T DSCAM Missense_Mutation p.I535N 0.34 deleterious(0) probably_damaging(0.997) TCGA-F4-6854-01 22 21380134 21380134 C T P2RX6 Missense_Mutation p.R311C 0.47 deleterious(0) probably_damaging(0.999) TCGA-F4-6854-01 22 46657414 46657414 A G PKDREJ Silent p.D602D 0.49 TCGA-F4-6854-01 2 113890294 113890294 G A IL1RN Missense_Mutation p.R130H 0.27 tolerated(0.07) possibly_damaging(0.835) TCGA-F4-6854-01 2 160697436 160697436 G A LY75-CD302 Missense_Mutation p.A1104V 0.26 tolerated(0.35) benign(0) TCGA-F4-6854-01 2 166773774 166773774 C A TTC21B Missense_Mutation p.G631V 0.32 deleterious(0) probably_damaging(0.91) TCGA-F4-6854-01 2 170175323 170175323 A C LRP2 Missense_Mutation p.C87G 0.38 probably_damaging(1) TCGA-F4-6854-01 2 179413153 179413153 C T TTN Missense_Mutation p.S31067N 0.39 TCGA-F4-6854-01 2 186671301 186671301 A C FSIP2 Missense_Mutation p.K5845N 0.31 benign(0.026) TCGA-F4-6854-01 2 189916915 189916915 C A COL5A2 Nonsense_Mutation p.G918* 0.07 TCGA-F4-6854-01 2 207834027 207834027 A G CPO Missense_Mutation p.E331G 0.10 deleterious(0) possibly_damaging(0.903) TCGA-F4-6854-01 2 21233023 21233023 G T APOB Missense_Mutation p.N2239K 0.19 benign(0.005) TCGA-F4-6854-01 2 230127587 230127587 G A PID1 5'UTR 0.57 TCGA-F4-6854-01 2 242572463 242572463 T C THAP4 Missense_Mutation p.N370S 0.10 deleterious(0.03) benign(0.192) TCGA-F4-6854-01 2 3685162 3685162 G A COLEC11 Missense_Mutation p.R95H 0.37 tolerated(0.29) probably_damaging(0.997) TCGA-F4-6854-01 2 37474691 37474691 G T NDUFAF7 Missense_Mutation p.M343I 0.40 tolerated(0.28) benign(0.081) TCGA-F4-6854-01 3 128060131 128060131 T C EEFSEC Missense_Mutation p.M281T 0.21 tolerated(0.55) benign(0.005) TCGA-F4-6854-01 3 134911524 134911524 G A EPHB1 Silent p.R663R 0.42 TCGA-F4-6854-01 3 13978924 13978924 A T FGD5P1 3'Flank 0.50 TCGA-F4-6854-01 3 151166190 151166190 G A IGSF10 Missense_Mutation p.R527W 0.41 deleterious(0) probably_damaging(1) TCGA-F4-6854-01 3 36484901 36484901 C T STAC Missense_Mutation p.R53W 0.31 deleterious(0) probably_damaging(0.983) TCGA-F4-6854-01 3 52945082 52945082 C T SFMBT1 Missense_Mutation p.G615S 0.34 tolerated(1) probably_damaging(0.958) TCGA-F4-6854-01 4 102946386 102946386 A C BANK1 Missense_Mutation p.E438D 0.57 tolerated(0.19) benign(0.001) TCGA-F4-6854-01 4 123164208 123164208 C A KIAA1109 Nonsense_Mutation p.S1576* 0.05 TCGA-F4-6854-01 4 140641398 140641398 G A MAML3 Silent p.N832N 0.67 TCGA-F4-6854-01 4 151827508 151827508 T C LRBA Missense_Mutation p.M515V 0.08 tolerated(0.39) probably_damaging(0.93) TCGA-F4-6854-01 4 22414816 22414816 C A GPR125 Missense_Mutation p.A741S 0.08 deleterious(0.02) possibly_damaging(0.785) TCGA-F4-6854-01 4 40122118 40122118 C T N4BP2 Missense_Mutation p.T796I 0.67 deleterious(0) possibly_damaging(0.634) TCGA-F4-6854-01 4 68512507 68512507 T A UBA6 Missense_Mutation p.L417F 0.13 tolerated(0.16) benign(0.081) TCGA-F4-6854-01 4 8098825 8098825 C G ABLIM2 Splice_Site p.X113_splice 0.35 TCGA-F4-6854-01 4 89425434 89425434 G T HERC5 Missense_Mutation p.K878N 0.25 tolerated(0.05) probably_damaging(0.95) TCGA-F4-6854-01 4 94750159 94750159 C G ATOH1 Missense_Mutation p.L28V 0.32 tolerated_low_confidence(0.94) benign(0) TCGA-F4-6854-01 5 13839571 13839571 C A DNAH5 Nonsense_Mutation p.E1926* 0.27 TCGA-F4-6854-01 5 140075331 140075331 C T HARS2 Silent p.D178D 0.33 TCGA-F4-6854-01 5 140208919 140208919 C T PCDHA6 Missense_Mutation p.R415C 0.26 deleterious_low_confidence(0.02) probably_damaging(0.96) TCGA-F4-6854-01 5 140536774 140536774 A G PCDHB17 Missense_Mutation p.N400D 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F4-6854-01 5 140750062 140750062 G T PCDHGB3 Missense_Mutation p.R34L 0.62 tolerated(0.07) benign(0.226) TCGA-F4-6854-01 5 160039866 160039866 G A ATP10B Missense_Mutation p.A907V 0.28 deleterious(0.02) probably_damaging(0.951) TCGA-F4-6854-01 5 55149281 55149281 T A IL31RA Intron 0.33 TCGA-F4-6854-01 5 78426944 78426944 G T BHMT 3'UTR 0.33 TCGA-F4-6854-01 6 116441754 116441754 G T COL10A1 Missense_Mutation p.P509T 0.33 deleterious(0.04) unknown(0) TCGA-F4-6854-01 6 128388756 128388756 C T PTPRK Missense_Mutation p.D689N 0.59 deleterious(0.03) probably_damaging(0.991) TCGA-F4-6854-01 6 27799149 27799149 C T HIST1H4K Missense_Mutation p.E53K 0.21 tolerated(0.1) benign(0.122) TCGA-F4-6854-01 6 30595033 30595033 G A ATAT1 Missense_Mutation p.G18E 0.32 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-F4-6854-01 6 37321961 37321961 C T RNF8 Silent p.F7F 0.20 TCGA-F4-6854-01 6 46797208 46797208 T C MEP1A Silent p.Y348Y 0.28 TCGA-F4-6854-01 6 96656985 96656985 C A FUT9 3'UTR 0.29 TCGA-F4-6854-01 7 127222412 127222412 G A GCC1 Missense_Mutation p.R662C 0.48 deleterious(0) probably_damaging(0.999) TCGA-F4-6854-01 7 130024454 130024454 C T CPA1 Silent p.D258D 0.47 TCGA-F4-6854-01 7 151071297 151071297 G A NUB1 Missense_Mutation p.A479T 0.28 tolerated(0.12) benign(0.003) TCGA-F4-6854-01 7 31378715 31378715 G A NEUROD6 Silent p.T56T 0.52 TCGA-F4-6854-01 7 82390098 82390098 A T PCLO Missense_Mutation p.L5049I 0.57 unknown(0) TCGA-F4-6854-01 7 82532007 82532007 C A PCLO Missense_Mutation p.R4496S 0.47 unknown(0) TCGA-F4-6854-01 7 89917653 89917653 T A C7orf63 Missense_Mutation p.L588M 0.27 deleterious(0.01) probably_damaging(1) TCGA-F4-6854-01 7 99693567 99693567 G A MCM7 Silent p.L475L 0.31 TCGA-F4-6854-01 8 120429173 120429173 A T NOV Missense_Mutation p.S92C 0.28 deleterious(0.02) possibly_damaging(0.711) TCGA-F4-6854-01 8 122626973 122626973 G A HAS2 Silent p.L345L 0.32 TCGA-F4-6854-01 8 42587259 42587259 C A CHRNB3 Nonsense_Mutation p.S270* 0.31 TCGA-F4-6854-01 9 118949776 118949776 C T PAPPA Silent p.I253I 0.33 TCGA-F4-6854-01 9 129598657 129598657 C G ZBTB43 3'UTR 0.29 TCGA-F4-6854-01 9 131271219 131271219 A G GLE1 Missense_Mutation p.H55R 0.20 tolerated(0.85) benign(0.008) TCGA-F4-6854-01 9 78804077 78804077 G A PCSK5 Silent p.Q816Q 0.26 TCGA-F4-6854-01 9 94488923 94488923 C T ROR2 Missense_Mutation p.R429Q 0.20 tolerated(0.07) benign(0.137) TCGA-F4-6854-01 X 131212598 131212598 A C FRMD7 Missense_Mutation p.C483G 0.16 tolerated(0.23) probably_damaging(0.997) TCGA-F4-6854-01 X 151869549 151869549 G T MAGEA6 Missense_Mutation p.W80L 0.68 tolerated(0.73) benign(0.008) TCGA-F4-6854-01 X 151869550 151869550 G T MAGEA6 Missense_Mutation p.W80C 0.66 tolerated(0.18) benign(0.034) TCGA-F4-6854-01 X 153764232 153764232 C T G6PD Missense_Mutation p.E93K 0.61 tolerated(1) benign(0.005) TCGA-F4-6854-01 X 72225222 72225223 CT - PABPC1L2B 3'UTR 0.44 TCGA-F4-6854-01 X 76776888 76776888 G A ATRX Missense_Mutation p.S2355L 0.23 benign(0.208) TCGA-F4-6855-01 10 104128553 104128553 C T GBF1 Silent p.I978I 0.27 TCGA-F4-6855-01 10 114920450 114920450 G C TCF7L2 Missense_Mutation p.R464T 0.47 deleterious(0) possibly_damaging(0.637) TCGA-F4-6855-01 10 120353588 120353588 T C PRLHR 3'UTR 0.10 TCGA-F4-6855-01 10 120353739 120353739 C T PRLHR Missense_Mutation p.D340N 0.23 tolerated(0.11) benign(0.348) TCGA-F4-6855-01 10 15760810 15760810 C T ITGA8 Missense_Mutation p.A100T 0.33 tolerated(0.12) benign(0.251) TCGA-F4-6855-01 10 49663074 49663074 C T ARHGAP22 Missense_Mutation p.A271T 0.24 deleterious(0.04) possibly_damaging(0.468) TCGA-F4-6855-01 10 67726372 67726372 C A CTNNA3 Missense_Mutation p.A800S 0.50 deleterious(0.04) unknown(0) TCGA-F4-6855-01 10 95156989 95156989 G A MYOF Intron 0.13 TCGA-F4-6855-01 11 103908145 103908145 C A DDI1 Missense_Mutation p.R199S 0.36 deleterious(0.02) benign(0.018) TCGA-F4-6855-01 11 113813725 113813725 C T HTR3B Silent p.L240L 0.17 TCGA-F4-6855-01 11 129742953 129742953 C T NFRKB Silent p.T888T 0.12 TCGA-F4-6855-01 11 30902815 30902815 G T DCDC1 Missense_Mutation p.P1705Q 0.25 tolerated(0.11) possibly_damaging(0.904) TCGA-F4-6855-01 11 73688930 73688930 C T UCP2 Splice_Site p.X113_splice 0.18 TCGA-F4-6855-01 11 88781020 88781020 C A GRM5 Silent p.L7L 0.20 TCGA-F4-6855-01 12 101689308 101689308 T C UTP20 Silent p.D434D 0.29 TCGA-F4-6855-01 12 111079391 111079391 C T TCTN1 Silent p.V383V 0.14 TCGA-F4-6855-01 12 117968802 117968802 C T KSR2 Silent p.P582P 0.19 TCGA-F4-6855-01 12 125462030 125462030 G A DHX37 Missense_Mutation p.R249W 0.23 deleterious(0) probably_damaging(1) TCGA-F4-6855-01 12 131293186 131293186 C A STX2 Missense_Mutation p.R115L 0.22 deleterious(0.01) possibly_damaging(0.902) TCGA-F4-6855-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.48 deleterious(0) possibly_damaging(0.479) TCGA-F4-6855-01 12 25699466 25699466 C T IFLTD1 Silent p.P111P 0.14 TCGA-F4-6855-01 12 5022207 5022207 C A KCNA1 3'UTR 0.18 TCGA-F4-6855-01 12 51690946 51690946 C T BIN2 Missense_Mutation p.R202H 0.47 deleterious(0) probably_damaging(0.989) TCGA-F4-6855-01 12 53200739 53200739 G T KRT4 3'UTR 0.59 TCGA-F4-6855-01 12 53937086 53937087 - T ATF7 Intron 0.08 TCGA-F4-6855-01 12 72893298 72893298 C T TRHDE Silent p.T490T 0.48 TCGA-F4-6855-01 12 78362415 78362415 C T NAV3 Nonsense_Mutation p.R202* 0.24 TCGA-F4-6855-01 13 113897296 113897296 G T CUL4A Silent p.A350A 0.37 TCGA-F4-6855-01 13 26349097 26349097 G A ATP8A2 Silent p.E893E 0.15 TCGA-F4-6855-01 13 84455298 84455298 G T SLITRK1 Missense_Mutation p.N115K 0.17 deleterious(0) possibly_damaging(0.792) TCGA-F4-6855-01 14 106641671 106641671 C T IGHV1-18 Silent p.Q81Q 0.19 TCGA-F4-6855-01 14 38064155 38064155 T C FOXA1 Missense_Mutation p.E8G 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-F4-6855-01 14 58737187 58737187 C G PSMA3 Silent p.L214L 0.47 TCGA-F4-6855-01 14 64676669 64676669 C T SYNE2 Missense_Mutation p.R6184W 0.23 probably_damaging(0.994) TCGA-F4-6855-01 14 94405679 94405679 G A ASB2 Silent p.G464G 0.35 TCGA-F4-6855-01 15 65959854 65959854 C T DENND4A Missense_Mutation p.R1724H 0.31 deleterious(0) possibly_damaging(0.844) TCGA-F4-6855-01 15 79298651 79298651 C T RASGRF1 Missense_Mutation p.R664H 0.35 deleterious(0) probably_damaging(0.986) TCGA-F4-6855-01 16 336350 336350 C A PDIA2 Intron 0.24 TCGA-F4-6855-01 16 50746190 50746190 C T NOD2 Missense_Mutation p.R790W 0.49 deleterious(0) possibly_damaging(0.88) TCGA-F4-6855-01 16 67272208 67272208 C A FHOD1 Missense_Mutation p.E148D 0.10 tolerated(1) possibly_damaging(0.806) TCGA-F4-6855-01 16 89294761 89294761 C T ZNF778 Missense_Mutation p.H661Y 0.53 deleterious(0.04) benign(0.001) TCGA-F4-6855-01 17 30274676 30274676 A G SUZ12 Missense_Mutation p.K143E 0.42 tolerated(0.05) benign(0.106) TCGA-F4-6855-01 17 39022444 39022444 C T KRT12 Missense_Mutation p.D205N 0.19 deleterious(0) probably_damaging(1) TCGA-F4-6855-01 17 41932633 41932633 T C CD300LG Missense_Mutation p.S260P 0.39 deleterious(0.01) benign(0.296) TCGA-F4-6855-01 17 42751529 42751529 C A C17orf104 Missense_Mutation p.P942T 0.23 tolerated_low_confidence(0.33) benign(0.009) TCGA-F4-6855-01 17 47123665 47123665 C T IGF2BP1 Missense_Mutation p.P524L 0.21 deleterious(0) probably_damaging(1) TCGA-F4-6855-01 17 71348718 71348718 C T SDK2 Silent p.T1884T 0.45 TCGA-F4-6855-01 17 73269716 73269716 C T SLC25A19 Missense_Mutation p.R260Q 0.58 tolerated(0.12) benign(0.258) TCGA-F4-6855-01 17 78091451 78091451 A G GAA Missense_Mutation p.E795G 0.48 tolerated(0.84) benign(0) TCGA-F4-6855-01 18 23895192 23895192 G C TAF4B Splice_Site p.X611_splice 0.27 TCGA-F4-6855-01 18 48581229 48581229 C A SMAD4 Nonsense_Mutation p.S178* 0.32 TCGA-F4-6855-01 19 15121742 15121742 G A CCDC105 Silent p.L35L 0.46 TCGA-F4-6855-01 19 21720450 21720450 C T ZNF429 Missense_Mutation p.T532I 0.24 deleterious(0.02) benign(0.161) TCGA-F4-6855-01 19 34180271 34180271 C T CHST8 Missense_Mutation p.T35M 0.15 tolerated(0.11) benign(0.213) TCGA-F4-6855-01 19 38089315 38089315 C T ZNF540 5'UTR 0.06 TCGA-F4-6855-01 19 39062778 39062778 C T RYR1 Silent p.G4622G 0.54 TCGA-F4-6855-01 19 4357989 4357989 C T MPND Intron 0.21 TCGA-F4-6855-01 19 57759970 57759970 C T ZNF805 Intron 0.27 TCGA-F4-6855-01 19 9085463 9085463 C T MUC16 Missense_Mutation p.A2118T 0.18 unknown(0) TCGA-F4-6855-01 1 109792762 109792762 T C CELSR2 Silent p.L21L 0.24 TCGA-F4-6855-01 1 1475131 1475131 G A TMEM240 Nonsense_Mutation p.R33* 0.09 TCGA-F4-6855-01 1 154544393 154544393 G A CHRNB2 Missense_Mutation p.R365Q 0.39 tolerated(0.51) benign(0.015) TCGA-F4-6855-01 1 165175152 165175152 G A LMX1A Nonsense_Mutation p.R313* 0.18 TCGA-F4-6855-01 1 17280733 17280733 G A CROCC Missense_Mutation p.E1068K 0.25 probably_damaging(0.98) TCGA-F4-6855-01 1 174417401 174417401 C T GPR52 Missense_Mutation p.T51I 0.60 deleterious(0.03) possibly_damaging(0.806) TCGA-F4-6855-01 1 185277956 185277957 - T IVNS1ABP Frame_Shift_Ins p.L112Afs*12 0.10 TCGA-F4-6855-01 1 185891568 185891568 C T HMCN1 Nonsense_Mutation p.R320* 0.10 TCGA-F4-6855-01 1 201778361 201778361 G A NAV1 Missense_Mutation p.R1426K 0.20 tolerated(0.18) possibly_damaging(0.581) TCGA-F4-6855-01 1 215956227 215956227 T A USH2A Missense_Mutation p.N3480Y 0.46 probably_damaging(1) TCGA-F4-6855-01 1 226549714 226549714 G A PARP1 Silent p.T973T 0.10 TCGA-F4-6855-01 1 241725482 241725482 C T KMO Silent p.P155P 0.17 TCGA-F4-6855-01 1 2421226 2421226 G A PLCH2 Missense_Mutation p.E452K 0.29 tolerated(0.07) possibly_damaging(0.655) TCGA-F4-6855-01 1 248367214 248367214 C G OR2M3 Missense_Mutation p.T282S 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-F4-6855-01 1 26189898 26189898 C A PAQR7 Missense_Mutation p.G145W 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6855-01 1 26658053 26658053 C A AIM1L Missense_Mutation p.G540V 0.26 deleterious(0.02) probably_damaging(1) TCGA-F4-6855-01 1 35851193 35851193 G A ZMYM4 Missense_Mutation p.G574S 0.29 deleterious(0.01) possibly_damaging(0.838) TCGA-F4-6855-01 1 47610481 47610481 G T CYP4A22 Intron 0.24 TCGA-F4-6855-01 20 60293886 60293886 C T RP11-429E11.3 Missense_Mutation p.R114H 0.45 possibly_damaging(0.711) TCGA-F4-6855-01 20 60989314 60989314 G A RBBP8NL Missense_Mutation p.R365W 0.19 deleterious(0.01) benign(0.046) TCGA-F4-6855-01 21 11098828 11098828 G A BAGE2 RNA 0.12 TCGA-F4-6855-01 22 29169762 29169762 G T CCDC117 Missense_Mutation p.D79Y 0.46 deleterious(0.01) probably_damaging(0.934) TCGA-F4-6855-01 22 50724512 50724512 C A PLXNB2 Silent p.V631V 0.33 TCGA-F4-6855-01 2 130791903 130791903 G A FAR2P1 5'Flank 0.50 TCGA-F4-6855-01 2 132289304 132289304 G A CCDC74A Silent p.A204A 0.26 TCGA-F4-6855-01 2 179636048 179636048 G T TTN Missense_Mutation p.S2669Y 0.21 TCGA-F4-6855-01 2 179638835 179638835 G A TTN Missense_Mutation p.R2354C 0.47 TCGA-F4-6855-01 2 180056592 180056592 T C SESTD1 Intron 0.26 TCGA-F4-6855-01 2 189454468 189454468 G A GULP1 Intron 0.22 TCGA-F4-6855-01 2 210642203 210642203 C T UNC80 Nonsense_Mutation p.R174* 0.21 TCGA-F4-6855-01 2 21236332 21236332 A G APOB Missense_Mutation p.S1306P 0.23 probably_damaging(0.994) TCGA-F4-6855-01 2 238283650 238283650 C A COL6A3 Missense_Mutation p.K1028N 0.18 probably_damaging(0.993) TCGA-F4-6855-01 2 241660417 241660417 C T KIF1A Silent p.S1594S 0.46 TCGA-F4-6855-01 3 121186432 121186432 C A POLQ Nonsense_Mutation p.E2301* 0.45 TCGA-F4-6855-01 3 1414074 1414074 C A CNTN6 Silent p.S528S 0.17 TCGA-F4-6855-01 3 158541932 158541932 C T MFSD1 Missense_Mutation p.L448F 0.23 deleterious(0.03) benign(0.413) TCGA-F4-6855-01 3 167277926 167277926 C T WDR49 Missense_Mutation p.A193T 0.26 deleterious(0.02) probably_damaging(0.943) TCGA-F4-6855-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.44 tolerated(0.11) possibly_damaging(0.529) TCGA-F4-6855-01 3 51431657 51431657 C G RBM15B 3'UTR 0.24 TCGA-F4-6855-01 3 52558610 52558610 C T NT5DC2 Missense_Mutation p.R517H 0.10 deleterious(0.04) possibly_damaging(0.506) TCGA-F4-6855-01 3 58109181 58109181 C T FLNB Missense_Mutation p.P1163L 0.30 deleterious(0.03) benign(0.407) TCGA-F4-6855-01 4 156137886 156137886 C T NPY2R 3'UTR 0.36 TCGA-F4-6855-01 4 174294601 174294601 A G SAP30 Missense_Mutation p.R126G 0.26 deleterious(0) possibly_damaging(0.684) TCGA-F4-6855-01 4 5624289 5624289 G A EVC2 Nonsense_Mutation p.R826* 0.24 TCGA-F4-6855-01 4 83277754 83277754 G A HNRNPD Silent p.Y312Y 0.27 TCGA-F4-6855-01 5 112174096 112174096 C A APC Nonsense_Mutation p.Y935* 0.20 TCGA-F4-6855-01 5 112175576 112175576 C T APC Nonsense_Mutation p.Q1429* 0.51 TCGA-F4-6855-01 5 112379272 112379272 C A MCC Missense_Mutation p.C904F 0.16 tolerated(0.69) benign(0.001) TCGA-F4-6855-01 5 118264231 118264231 C A DTWD2 Splice_Site p.X199_splice 0.27 TCGA-F4-6855-01 5 149633044 149633044 C A CAMK2A Silent p.L159L 0.21 TCGA-F4-6855-01 5 156766136 156766136 C G CYFIP2 Missense_Mutation p.S793R 0.22 deleterious(0.03) benign(0.098) TCGA-F4-6855-01 5 164028052 164028052 C A CTC-340A15.2 RNA 0.14 TCGA-F4-6855-01 5 180651185 180651185 G A TRIM41 Silent p.E62E 0.30 TCGA-F4-6855-01 5 26890048 26890048 C A CDH9 Missense_Mutation p.S470I 0.32 deleterious(0) benign(0.17) TCGA-F4-6855-01 5 71491975 71491975 C T MAP1B Silent p.A931A 0.23 TCGA-F4-6855-01 5 75587122 75587122 G C SV2C Missense_Mutation p.R405T 0.42 deleterious(0.01) possibly_damaging(0.524) TCGA-F4-6855-01 6 112462037 112462037 C T LAMA4 Silent p.S967S 0.46 TCGA-F4-6855-01 6 165715296 165715296 C T C6orf118 Missense_Mutation p.R172H 0.46 tolerated(0.3) benign(0.04) TCGA-F4-6855-01 6 26017612 26017612 C T HIST1H1A Missense_Mutation p.V117M 0.26 tolerated(0.1) benign(0.445) TCGA-F4-6855-01 6 27835302 27835302 C G HIST1H1B Silent p.S2S 0.21 TCGA-F4-6855-01 6 3287145 3287145 G A SLC22A23 Silent p.L498L 0.63 TCGA-F4-6855-01 6 62390854 62390854 G T KHDRBS2 3'UTR 0.30 TCGA-F4-6855-01 6 65301171 65301171 G T EYS Missense_Mutation p.T1530N 0.05 deleterious(0.01) probably_damaging(0.958) TCGA-F4-6855-01 6 656423 656423 G A HUS1B Silent p.N174N 0.30 TCGA-F4-6855-01 6 71012741 71012741 C G COL9A1 5'UTR 0.58 TCGA-F4-6855-01 7 128487758 128487758 G A FLNC Silent p.P1432P 0.10 TCGA-F4-6855-01 7 135304439 135304440 - T NUP205 Splice_Site p.X1411_splice 0.38 TCGA-F4-6855-01 7 21641132 21641132 C T DNAH11 Nonsense_Mutation p.R1182* 0.14 TCGA-F4-6855-01 7 4056840 4056840 C T SDK1 Missense_Mutation p.R820W 0.11 deleterious(0.03) benign(0.056) TCGA-F4-6855-01 7 4947153 4947153 G A MMD2 Silent p.D229D 0.43 TCGA-F4-6855-01 7 5965367 5965367 T G RSPH10B 3'Flank 0.10 TCGA-F4-6855-01 7 64661053 64661053 T A INTS4L1 RNA 0.18 TCGA-F4-6855-01 7 94163078 94163078 T G CASD1 Missense_Mutation p.L198V 0.38 tolerated(0.08) possibly_damaging(0.487) TCGA-F4-6855-01 7 97617861 97617861 C G OCM2 Splice_Site p.X21_splice 0.34 TCGA-F4-6855-01 8 104943555 104943555 T A RIMS2 Missense_Mutation p.L770H 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-F4-6855-01 8 120581596 120581596 G A ENPP2 Silent p.S696S 0.38 TCGA-F4-6855-01 8 135613949 135613949 G C ZFAT Missense_Mutation p.S671R 0.27 tolerated(0.15) benign(0.001) TCGA-F4-6855-01 8 145532668 145532668 A G HSF1 Missense_Mutation p.N65S 0.15 deleterious(0) probably_damaging(0.969) TCGA-F4-6855-01 8 2017617 2017617 G A MYOM2 Splice_Site p.X265_splice 0.22 TCGA-F4-6855-01 8 22478928 22478928 C T BIN3 3'UTR 0.64 TCGA-F4-6855-01 8 24333950 24333950 G A ADAM7 Missense_Mutation p.R213H 0.38 tolerated(0.26) benign(0.063) TCGA-F4-6855-01 8 86572554 86572554 T C REXO1L1P 3'UTR 0.18 TCGA-F4-6855-01 9 136313803 136313803 C T ADAMTS13 Missense_Mutation p.P939S 0.50 deleterious(0) probably_damaging(0.996) TCGA-F4-6855-01 9 137623429 137623429 G A COL5A1 Missense_Mutation p.D418N 0.21 probably_damaging(0.995) TCGA-F4-6855-01 9 34657330 34657330 G A IL11RA Silent p.Q159Q 0.18 TCGA-F4-6855-01 9 36665502 36665503 AA - MELK Frame_Shift_Del p.K445Dfs*4 0.21 TCGA-F4-6855-01 9 5164043 5164043 C T INSL6 Missense_Mutation p.R171H 0.24 tolerated(0.05) probably_damaging(0.954) TCGA-F4-6855-01 9 86618841 86618841 A T RMI1 3'UTR 0.39 TCGA-F4-6855-01 X 100349857 100349857 C A TMEM35 Missense_Mutation p.S139Y 0.21 deleterious(0.03) benign(0.011) TCGA-F4-6855-01 X 119390129 119390129 C G ZBTB33 3'UTR 0.20 TCGA-F4-6855-01 X 149999703 149999703 C T CD99L2 Splice_Site p.X44_splice 0.13 TCGA-F4-6855-01 X 153228789 153228789 C T HCFC1 Missense_Mutation p.R200Q 0.11 deleterious(0) probably_damaging(0.99) TCGA-F4-6855-01 X 29938105 29938105 C G IL1RAPL1 Missense_Mutation p.I317M 0.21 tolerated(0.09) possibly_damaging(0.865) TCGA-F4-6855-01 X 37553698 37553698 G A XK Silent p.A135A 0.25 TCGA-F4-6855-01 X 48814770 48814770 C T OTUD5 Silent p.P21P 0.20 TCGA-F4-6855-01 X 57936942 57936943 - G ZXDA 5'UTR 0.25 TCGA-F4-6855-01 X 91090423 91090423 C A PCDH11X 5'UTR 0.27 TCGA-F4-6856-01 10 100020736 100020736 A G LOXL4 Missense_Mutation p.V202A 0.36 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 10 102027404 102027404 G A CWF19L1 5'UTR 0.25 TCGA-F4-6856-01 10 104934665 104934665 A G NT5C2 Silent p.A17A 0.08 TCGA-F4-6856-01 10 105362068 105362068 C A SH3PXD2A Missense_Mutation p.R941S 0.40 tolerated(0.05) probably_damaging(0.996) TCGA-F4-6856-01 10 108338892 108338892 C T SORCS1 Silent p.R1163R 0.19 TCGA-F4-6856-01 10 11527185 11527186 - A USP6NL Frame_Shift_Ins p.Q287Sfs*5 0.30 TCGA-F4-6856-01 10 118228795 118228795 T - PNLIPRP3 Frame_Shift_Del p.L344* 0.18 TCGA-F4-6856-01 10 122649410 122649410 A G WDR11 Silent p.G744G 0.29 TCGA-F4-6856-01 10 126673421 126673421 G A ZRANB1 Missense_Mutation p.A663T 0.33 deleterious(0) probably_damaging(0.995) TCGA-F4-6856-01 10 127349628 127349628 G A TEX36 Missense_Mutation p.R76W 0.40 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 10 127737879 127737879 G A ADAM12 Silent p.G623G 0.37 TCGA-F4-6856-01 10 131640400 131640400 G A EBF3 Missense_Mutation p.T442M 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-F4-6856-01 10 131973150 131973150 G A GLRX3 Missense_Mutation p.D282N 0.05 deleterious(0.03) probably_damaging(0.983) TCGA-F4-6856-01 10 13263962 13263962 C T UCMA 3'UTR 0.37 TCGA-F4-6856-01 10 134218220 134218220 G - PWWP2B Frame_Shift_Del p.D74Mfs*4 0.22 TCGA-F4-6856-01 10 134738304 134738304 G A TTC40 Silent p.C384C 0.29 TCGA-F4-6856-01 10 13534830 13534830 G A BEND7 Silent p.S154S 0.25 TCGA-F4-6856-01 10 13698807 13698807 G A FRMD4A Silent p.L928L 0.29 TCGA-F4-6856-01 10 15256372 15256372 G A FAM171A1 Silent p.G405G 0.23 TCGA-F4-6856-01 10 17199536 17199536 T C TRDMT1 Missense_Mutation p.N264S 0.38 tolerated(1) benign(0) TCGA-F4-6856-01 10 18276441 18276441 T G SLC39A12 Missense_Mutation p.L377R 0.37 deleterious(0) probably_damaging(0.971) TCGA-F4-6856-01 10 19780483 19780483 T - MALRD1 Frame_Shift_Del p.L1070Cfs*75 0.14 TCGA-F4-6856-01 10 26436439 26436439 C T MYO3A Silent p.S862S 0.31 TCGA-F4-6856-01 10 27687763 27687763 A - PTCHD3 Frame_Shift_Del p.F588Lfs*18 0.24 TCGA-F4-6856-01 10 30317873 30317873 G A KIAA1462 Missense_Mutation p.R402C 0.29 tolerated(0.2) benign(0.004) TCGA-F4-6856-01 10 3182923 3182923 G A PITRM1 Silent p.G910G 0.33 TCGA-F4-6856-01 10 33502502 33502502 C T NRP1 Missense_Mutation p.A476T 0.36 tolerated(0.97) benign(0) TCGA-F4-6856-01 10 45406928 45406928 C T TMEM72 5'UTR 0.20 TCGA-F4-6856-01 10 468865 468865 A G DIP2C Missense_Mutation p.I168T 0.30 tolerated(0.1) benign(0.006) TCGA-F4-6856-01 10 50681008 50681008 C - ERCC6 Frame_Shift_Del p.A926Qfs*26 0.29 TCGA-F4-6856-01 10 58118050 58118050 A T ZWINT Intron 0.23 TCGA-F4-6856-01 10 61414180 61414180 T - SLC16A9 Frame_Shift_Del p.I202* 0.29 TCGA-F4-6856-01 10 6264841 6264841 C T PFKFB3 Silent p.R369R 0.26 TCGA-F4-6856-01 10 63851143 63851143 G A ARID5B Missense_Mutation p.A641T 0.35 tolerated(0.44) probably_damaging(0.98) TCGA-F4-6856-01 10 64575653 64575653 C A EGR2 Missense_Mutation p.G46V 0.28 tolerated(0.14) probably_damaging(0.994) TCGA-F4-6856-01 10 69714420 69714420 A T HERC4 Missense_Mutation p.L765I 0.38 tolerated(0.38) benign(0.359) TCGA-F4-6856-01 10 69881327 69881327 C T MYPN Silent p.F44F 0.13 TCGA-F4-6856-01 10 69926167 69926167 C - MYPN Frame_Shift_Del p.K575Nfs*9 0.19 TCGA-F4-6856-01 10 71654334 71654334 G T COL13A1 Silent p.P201P 0.13 TCGA-F4-6856-01 10 72164271 72164272 - G EIF4EBP2 Frame_Shift_Ins p.T41Dfs*15 0.30 TCGA-F4-6856-01 10 72299481 72299481 G A PALD1 Missense_Mutation p.R624H 0.37 deleterious(0.02) probably_damaging(0.937) TCGA-F4-6856-01 10 7327730 7327730 G A SFMBT2 Intron 0.32 TCGA-F4-6856-01 10 73768003 73768003 C T CHST3 Missense_Mutation p.T405M 0.23 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 10 73768121 73768121 C T CHST3 Silent p.C444C 0.19 TCGA-F4-6856-01 10 74183121 74183121 G A MICU1 Silent p.R314R 0.34 TCGA-F4-6856-01 10 75519937 75519937 C - SEC24C Frame_Shift_Del p.P216Qfs*11 0.30 TCGA-F4-6856-01 10 76789971 76789971 C T KAT6B Nonsense_Mutation p.R1797* 0.12 TCGA-F4-6856-01 10 7751089 7751089 G A ITIH2 Silent p.P99P 0.28 TCGA-F4-6856-01 10 81273006 81273006 T - EIF5AL1 3'UTR 0.15 TCGA-F4-6856-01 10 882372 882372 G A LARP4B Missense_Mutation p.R241C 0.31 deleterious(0) probably_damaging(0.957) TCGA-F4-6856-01 10 88769068 88769068 G C RP11-96C23.10 3'Flank 0.12 TCGA-F4-6856-01 10 89125908 89125908 C T NUTM2D Intron 0.18 TCGA-F4-6856-01 10 89624242 89624243 AA - PTEN Frame_Shift_Del p.K6Rfs*4 0.22 TCGA-F4-6856-01 10 89720677 89720677 T A PTEN Missense_Mutation p.N276K 0.34 deleterious(0) probably_damaging(0.996) TCGA-F4-6856-01 10 93390538 93390538 G T PPP1R3C Missense_Mutation p.P34T 0.28 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 10 94070898 94070898 C T MARCH5 Silent p.C14C 0.25 TCGA-F4-6856-01 10 95134654 95134654 G A MYOF Nonsense_Mutation p.R723* 0.30 TCGA-F4-6856-01 10 96495088 96495088 C A CYP2C18 Missense_Mutation p.Q454K 0.27 deleterious(0) probably_damaging(0.986) TCGA-F4-6856-01 10 97397115 97397115 G A ALDH18A1 Missense_Mutation p.R128C 0.43 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 10 97447400 97447400 G A TCTN3 Silent p.G192G 0.11 TCGA-F4-6856-01 10 97816719 97816719 C T CCNJ Missense_Mutation p.A181V 0.10 tolerated(0.13) possibly_damaging(0.546) TCGA-F4-6856-01 11 100933233 100933233 A T PGR Missense_Mutation p.N719K 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 11 105842684 105842684 G A GRIA4 Missense_Mutation p.V780I 0.08 tolerated(0.54) benign(0.016) TCGA-F4-6856-01 11 108044069 108044069 T - NPAT Frame_Shift_Del p.S548Vfs*11 0.17 TCGA-F4-6856-01 11 110035572 110035572 G A ZC3H12C Missense_Mutation p.G588R 0.34 deleterious(0) probably_damaging(0.996) TCGA-F4-6856-01 11 111169333 111169333 T C COLCA1 5'UTR 0.29 TCGA-F4-6856-01 11 111745845 111745845 G A FDXACB1 Missense_Mutation p.A559V 0.10 tolerated(0.21) possibly_damaging(0.641) TCGA-F4-6856-01 11 112071486 112071486 G A BCO2 Missense_Mutation p.R339H 0.48 tolerated(1) benign(0.001) TCGA-F4-6856-01 11 113660115 113660115 C T ATF4P4 RNA 0.28 TCGA-F4-6856-01 11 114577255 114577255 A T NXPE2 Missense_Mutation p.E428V 0.31 tolerated(0.23) benign(0.027) TCGA-F4-6856-01 11 115049428 115049428 C T CADM1 Silent p.A382A 0.39 TCGA-F4-6856-01 11 116692505 116692505 C T APOA4 Missense_Mutation p.R90H 0.34 tolerated(0.16) benign(0.03) TCGA-F4-6856-01 11 116692540 116692540 C T APOA4 Silent p.K78K 0.36 TCGA-F4-6856-01 11 117063581 117063581 C T SIDT2 Silent p.L702L 0.08 TCGA-F4-6856-01 11 118391552 118391552 G A KMT2A Missense_Mutation p.R3822H 0.31 probably_damaging(0.994) TCGA-F4-6856-01 11 118771771 118771771 G - BCL9L Frame_Shift_Del p.P894Lfs*17 0.20 TCGA-F4-6856-01 11 118773098 118773098 G - BCL9L Frame_Shift_Del p.Q452Sfs*11 0.34 TCGA-F4-6856-01 11 119050525 119050525 G A NLRX1 Missense_Mutation p.A599T 0.26 tolerated(0.13) probably_damaging(0.998) TCGA-F4-6856-01 11 119212640 119212640 G A MFRP Missense_Mutation p.T481I 0.34 tolerated(0.15) possibly_damaging(0.649) TCGA-F4-6856-01 11 121000442 121000442 C T TECTA Silent p.G821G 0.30 TCGA-F4-6856-01 11 121028656 121028656 C T TECTA Missense_Mutation p.A1471V 0.16 tolerated(0.22) benign(0.028) TCGA-F4-6856-01 11 121174120 121174120 T G SC5D Missense_Mutation p.F12L 0.28 tolerated(0.5) benign(0.002) TCGA-F4-6856-01 11 121177782 121177782 A G SC5D Missense_Mutation p.H154R 0.32 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 11 123601648 123601648 C - ZNF202 5'UTR 0.30 TCGA-F4-6856-01 11 123988194 123988194 T - VWA5A Intron 0.23 TCGA-F4-6856-01 11 125325945 125325945 G T FEZ1 Missense_Mutation p.A242D 0.21 tolerated(0.07) possibly_damaging(0.882) TCGA-F4-6856-01 11 125763900 125763900 C T PUS3 Missense_Mutation p.R409H 0.25 deleterious(0) benign(0.425) TCGA-F4-6856-01 11 125763901 125763901 G A PUS3 Missense_Mutation p.R409C 0.34 deleterious(0) possibly_damaging(0.815) TCGA-F4-6856-01 11 128638163 128638163 C T FLI1 Silent p.P127P 0.20 TCGA-F4-6856-01 11 129785609 129785609 G A PRDM10 Silent p.T828T 0.27 TCGA-F4-6856-01 11 130010309 130010309 G T APLP2 Missense_Mutation p.E630D 0.28 tolerated(0.52) benign(0.005) TCGA-F4-6856-01 11 134115383 134115383 T A VPS26B Missense_Mutation p.S304T 0.17 tolerated(0.47) benign(0.003) TCGA-F4-6856-01 11 13721916 13721916 C T FAR1 Missense_Mutation p.A81V 0.30 tolerated(0.18) benign(0.007) TCGA-F4-6856-01 11 16810778 16810778 C A PLEKHA7 Missense_Mutation p.E1074D 0.27 tolerated(0.14) probably_damaging(0.938) TCGA-F4-6856-01 11 17741360 17741360 G A MYOD1 Missense_Mutation p.V11I 0.25 tolerated_low_confidence(0.07) benign(0.014) TCGA-F4-6856-01 11 18498031 18498032 - A LDHAL6A Frame_Shift_Ins p.V234Sfs*7 0.22 TCGA-F4-6856-01 11 2156674 2156674 C T IGF2 Missense_Mutation p.R83H 0.25 deleterious(0.03) benign(0.063) TCGA-F4-6856-01 11 27679732 27679732 C T BDNF Missense_Mutation p.R209Q 0.28 deleterious(0) probably_damaging(0.947) TCGA-F4-6856-01 11 28119463 28119463 T C KIF18A Missense_Mutation p.H11R 0.31 deleterious(0.04) benign(0.006) TCGA-F4-6856-01 11 33566636 33566636 T C KIAA1549L Missense_Mutation p.S736P 0.35 deleterious_low_confidence(0.02) benign(0.007) TCGA-F4-6856-01 11 376322 376322 G A B4GALNT4 Missense_Mutation p.R423H 0.31 tolerated(0.06) probably_damaging(0.987) TCGA-F4-6856-01 11 406484 406484 G A SIGIRR Nonsense_Mutation p.Q312* 0.11 TCGA-F4-6856-01 11 4626436 4626436 C T TRIM68 Missense_Mutation p.R100H 0.24 tolerated(0.26) possibly_damaging(0.553) TCGA-F4-6856-01 11 46831318 46831320 TGT - CKAP5 In_Frame_Del p.Q246del 0.34 TCGA-F4-6856-01 11 46880747 46880747 G C LRP4 Silent p.G1835G 0.37 TCGA-F4-6856-01 11 47297452 47297452 A G MADD Missense_Mutation p.D221G 0.25 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 11 5013625 5013625 T G MMP26 3'UTR 0.40 TCGA-F4-6856-01 11 55065705 55065705 G T TRIM51HP RNA 0.38 TCGA-F4-6856-01 11 57571228 57571228 G A CTNND1 Missense_Mutation p.R519H 0.35 deleterious(0.02) probably_damaging(0.995) TCGA-F4-6856-01 11 57948094 57948094 T C OR9Q1 3'UTR 0.29 TCGA-F4-6856-01 11 57995714 57995714 G A OR10Q1 Silent p.L212L 0.33 TCGA-F4-6856-01 11 582025 582025 G T PHRF1 Missense_Mutation p.G53V 0.31 tolerated(0.06) possibly_damaging(0.865) TCGA-F4-6856-01 11 59939503 59939504 - T MS4A6A 3'Flank 0.36 TCGA-F4-6856-01 11 60688430 60688430 G A TMEM109 Missense_Mutation p.A104T 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-F4-6856-01 11 60705453 60705453 C T SLC15A3 Missense_Mutation p.A494T 0.36 tolerated(0.06) possibly_damaging(0.811) TCGA-F4-6856-01 11 61537817 61537818 - C MYRF Frame_Shift_Ins p.P190Afs*38 0.31 TCGA-F4-6856-01 11 62299517 62299517 T C AHNAK Missense_Mutation p.D791G 0.30 benign(0.124) TCGA-F4-6856-01 11 63403712 63403712 C A ATL3 Missense_Mutation p.K315N 0.21 deleterious(0.04) probably_damaging(1) TCGA-F4-6856-01 11 63885942 63885942 T - FLRT1 3'UTR 0.31 TCGA-F4-6856-01 11 64108099 64108099 G A CCDC88B Silent p.L27L 0.22 TCGA-F4-6856-01 11 6414487 6414487 G A SMPD1 Missense_Mutation p.R378H 0.37 deleterious(0) probably_damaging(0.988) TCGA-F4-6856-01 11 6423807 6423808 - C APBB1 Frame_Shift_Ins p.E418Gfs*12 0.28 TCGA-F4-6856-01 11 64680831 64680831 C T ATG2A Silent p.A211A 0.44 TCGA-F4-6856-01 11 6477934 6477934 G A TRIM3 Missense_Mutation p.A341V 0.35 tolerated(0.26) benign(0.01) TCGA-F4-6856-01 11 64825617 64825617 G T NAALADL1 Silent p.A97A 0.40 TCGA-F4-6856-01 11 64846565 64846565 C - CDCA5 3'UTR 0.21 TCGA-F4-6856-01 11 64897595 64897595 A G SYVN1 Silent p.S429S 0.14 TCGA-F4-6856-01 11 65156922 65156922 G A FRMD8 Missense_Mutation p.R59H 0.39 tolerated(0.07) benign(0.002) TCGA-F4-6856-01 11 65688885 65688885 C T DRAP1 Silent p.D199D 0.30 TCGA-F4-6856-01 11 67013527 67013527 T C KDM2A Silent p.F635F 0.36 TCGA-F4-6856-01 11 67264863 67264863 C T PITPNM1 Missense_Mutation p.R662Q 0.30 tolerated(0.2) benign(0.014) TCGA-F4-6856-01 11 67265775 67265775 G A PITPNM1 Silent p.H501H 0.32 TCGA-F4-6856-01 11 67400499 67400499 G A TBX10 Missense_Mutation p.R209C 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-F4-6856-01 11 67811647 67811647 C T TCIRG1 Silent p.L286L 0.29 TCGA-F4-6856-01 11 67817529 67817529 C T TCIRG1 Missense_Mutation p.A705V 0.38 tolerated(0.18) benign(0.014) TCGA-F4-6856-01 11 6789370 6789370 G A OR2AG2 Silent p.I273I 0.22 TCGA-F4-6856-01 11 68517972 68517972 A G MTL5 Missense_Mutation p.Y53H 0.28 tolerated_low_confidence(0.17) benign(0.035) TCGA-F4-6856-01 11 6891474 6891476 CTT - OR10A2 In_Frame_Del p.F165del 0.24 TCGA-F4-6856-01 11 70277323 70277323 G A CTTN Silent p.T364T 0.24 TCGA-F4-6856-01 11 72005087 72005087 G A CLPB Silent p.G618G 0.33 TCGA-F4-6856-01 11 720552 720552 G A EPS8L2 Intron 0.22 TCGA-F4-6856-01 11 72538271 72538271 G A ATG16L2 Missense_Mutation p.V469M 0.33 deleterious(0.02) possibly_damaging(0.797) TCGA-F4-6856-01 11 72613604 72613604 G A FCHSD2 Missense_Mutation p.P303L 0.29 tolerated(0.19) probably_damaging(0.937) TCGA-F4-6856-01 11 760142 760142 C T TALDO1 Missense_Mutation p.A117V 0.06 deleterious(0.04) benign(0.149) TCGA-F4-6856-01 11 77669843 77669843 C T INTS4 Missense_Mutation p.R249H 0.05 deleterious(0) probably_damaging(0.985) TCGA-F4-6856-01 11 85689112 85689112 C T PICALM Intron 0.30 TCGA-F4-6856-01 11 85725926 85725926 A T PICALM Missense_Mutation p.L178H 0.29 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 11 92534954 92534954 G A FAT3 Silent p.A2925A 0.23 TCGA-F4-6856-01 11 92568207 92568207 C T FAT3 Missense_Mutation p.A3348V 0.23 benign(0.046) TCGA-F4-6856-01 11 92714673 92714673 C T MTNR1B Missense_Mutation p.P95L 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-F4-6856-01 11 92714765 92714765 G A MTNR1B Missense_Mutation p.G126S 0.23 tolerated(0.07) possibly_damaging(0.455) TCGA-F4-6856-01 11 95825254 95825254 C T MAML2 Silent p.Q647Q 0.21 TCGA-F4-6856-01 11 95825260 95825260 T C MAML2 Silent p.Q645Q 0.20 TCGA-F4-6856-01 11 96086844 96086844 G A CCDC82 Missense_Mutation p.A534V 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-F4-6856-01 11 972125 972125 G A AP2A2 Missense_Mutation p.A115T 0.34 deleterious(0.04) benign(0.047) TCGA-F4-6856-01 12 102590660 102590660 T C PARPBP 3'Flank 0.30 TCGA-F4-6856-01 12 103232912 103232912 C T PAH 3'UTR 0.33 TCGA-F4-6856-01 12 104341185 104341187 GAT - HSP90B1 In_Frame_Del p.D787del 0.28 TCGA-F4-6856-01 12 104715082 104715082 C T TXNRD1 Silent p.F401F 0.20 TCGA-F4-6856-01 12 106770154 106770154 G A POLR3B Missense_Mutation p.R141H 0.33 deleterious(0.03) benign(0.315) TCGA-F4-6856-01 12 106995070 106995070 G A RFX4 Missense_Mutation p.A6T 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-F4-6856-01 12 10758817 10758817 A G MAGOHB 3'UTR 0.15 TCGA-F4-6856-01 12 108603914 108603914 G A WSCD2 Missense_Mutation p.G172R 0.23 deleterious(0) probably_damaging(0.95) TCGA-F4-6856-01 12 113542005 113542005 G A RASAL1 Silent p.D644D 0.34 TCGA-F4-6856-01 12 117013860 117013860 A G MAP1LC3B2 Missense_Mutation p.Y38C 0.27 deleterious(0.02) possibly_damaging(0.494) TCGA-F4-6856-01 12 120591163 120591163 C T GCN1L1 Missense_Mutation p.A1306T 0.39 probably_damaging(0.935) TCGA-F4-6856-01 12 121471414 121471414 T - OASL Frame_Shift_Del p.T111Pfs*16 0.25 TCGA-F4-6856-01 12 122017957 122017957 T - KDM2B Intron 0.21 TCGA-F4-6856-01 12 122691244 122691244 G - B3GNT4 Frame_Shift_Del p.G150Afs*4 0.24 TCGA-F4-6856-01 12 122801318 122801318 T - CLIP1 Frame_Shift_Del p.M1151Wfs*8 0.24 TCGA-F4-6856-01 12 123333045 123333045 G A HIP1R Missense_Mutation p.A64T 0.25 deleterious(0.02) probably_damaging(1) TCGA-F4-6856-01 12 123907701 123907701 G T RILPL2 Silent p.G165G 0.26 TCGA-F4-6856-01 12 124364299 124364299 G A DNAH10 Missense_Mutation p.R2744H 0.30 possibly_damaging(0.717) TCGA-F4-6856-01 12 129566560 129566560 T A TMEM132D Missense_Mutation p.E556V 0.15 deleterious(0) possibly_damaging(0.662) TCGA-F4-6856-01 12 130649793 130649793 G A FZD10 3'UTR 0.24 TCGA-F4-6856-01 12 132199421 132199421 C T SFSWAP Missense_Mutation p.A148V 0.25 deleterious(0.01) probably_damaging(0.922) TCGA-F4-6856-01 12 132466768 132466768 C T EP400 Silent p.P558P 0.19 TCGA-F4-6856-01 12 132529374 132529374 C T EP400 Silent p.D2220D 0.40 TCGA-F4-6856-01 12 133148092 133148092 G A FBRSL1 Silent p.P471P 0.23 TCGA-F4-6856-01 12 14794058 14794058 G A GUCY2C Missense_Mutation p.R676W 0.33 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 12 1893123 1893123 G A ADIPOR2 Missense_Mutation p.A306T 0.19 tolerated(0.58) benign(0.01) TCGA-F4-6856-01 12 21453474 21453474 G A SLCO1A2 Missense_Mutation p.R240C 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 12 21926566 21926566 G A KCNJ8 5'UTR 0.33 TCGA-F4-6856-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.21 deleterious(0.03) possibly_damaging(0.876) TCGA-F4-6856-01 12 29725064 29725064 C T TMTC1 Silent p.A502A 0.35 TCGA-F4-6856-01 12 32481454 32481454 G A BICD1 Missense_Mutation p.A689T 0.30 tolerated(0.09) probably_damaging(0.997) TCGA-F4-6856-01 12 3310399 3310399 T A TSPAN9 Missense_Mutation p.F14I 0.28 deleterious(0) benign(0.061) TCGA-F4-6856-01 12 40158623 40158623 A G SLC2A13 Missense_Mutation p.F495L 0.08 tolerated(0.59) benign(0.005) TCGA-F4-6856-01 12 43833826 43833826 A T ADAMTS20 Silent p.L779L 0.27 TCGA-F4-6856-01 12 46322448 46322448 A T SCAF11 Missense_Mutation p.C346S 0.12 tolerated(0.08) benign(0.367) TCGA-F4-6856-01 12 48547209 48547209 C T ASB8 Missense_Mutation p.R24Q 0.24 tolerated(0.08) possibly_damaging(0.602) TCGA-F4-6856-01 12 50055828 50055828 C T FMNL3 Missense_Mutation p.V125M 0.38 deleterious(0) probably_damaging(0.916) TCGA-F4-6856-01 12 52946762 52946762 C T KRT71 Missense_Mutation p.A34T 0.41 tolerated(0.07) benign(0.073) TCGA-F4-6856-01 12 53069343 53069343 A G KRT1 Silent p.G523G 0.41 TCGA-F4-6856-01 12 53579241 53579242 - A ZNF740 Frame_Shift_Ins p.T80Dfs*3 0.27 TCGA-F4-6856-01 12 53580210 53580210 C T ZNF740 Missense_Mutation p.R137C 0.32 deleterious(0.01) possibly_damaging(0.898) TCGA-F4-6856-01 12 55423764 55423764 T - NEUROD4 3'UTR 0.20 TCGA-F4-6856-01 12 56077774 56077774 C A METTL7B Missense_Mutation p.P226T 0.39 tolerated(0.45) benign(0.002) TCGA-F4-6856-01 12 56395958 56395958 G A SUOX 5'UTR 0.19 TCGA-F4-6856-01 12 56537706 56537706 G A ESYT1 3'UTR 0.25 TCGA-F4-6856-01 12 57125457 57125457 T C PRIM1 3'UTR 0.14 TCGA-F4-6856-01 12 57630410 57630410 A T NDUFA4L2 Missense_Mutation p.L38M 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6856-01 12 57642942 57642942 C T STAC3 Silent p.E72E 0.27 TCGA-F4-6856-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.29 TCGA-F4-6856-01 12 57867397 57867397 C T ARHGAP9 Silent p.E671E 0.20 TCGA-F4-6856-01 12 62954370 62954370 A G MON2 Missense_Mutation p.Q1170R 0.32 deleterious(0) probably_damaging(0.991) TCGA-F4-6856-01 12 64536335 64536335 C T SRGAP1 Silent p.G1047G 0.14 TCGA-F4-6856-01 12 6579734 6579734 G T VAMP1 5'UTR 0.31 TCGA-F4-6856-01 12 6669662 6669662 G A NOP2 Missense_Mutation p.A537V 0.13 deleterious(0) probably_damaging(0.995) TCGA-F4-6856-01 12 6690953 6690953 G A CHD4 Missense_Mutation p.R1515C 0.08 deleterious(0.01) possibly_damaging(0.626) TCGA-F4-6856-01 12 6806896 6806896 G A PIANP Missense_Mutation p.P27L 0.39 tolerated_low_confidence(0.05) unknown(0) TCGA-F4-6856-01 12 69145935 69145935 G A SLC35E3 Missense_Mutation p.G213R 0.25 tolerated(0.11) benign(0.02) TCGA-F4-6856-01 12 7310658 7310658 C - CLSTN3 Frame_Shift_Del p.P953Hfs*106 0.42 TCGA-F4-6856-01 12 75442058 75442058 A G KCNC2 Missense_Mutation p.L552P 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.707) TCGA-F4-6856-01 12 7842577 7842577 G A GDF3 Missense_Mutation p.P331L 0.19 deleterious(0.02) possibly_damaging(0.618) TCGA-F4-6856-01 12 81205340 81205340 C T LIN7A Silent p.K202K 0.29 TCGA-F4-6856-01 12 81528630 81528630 C T ACSS3 Silent p.G164G 0.22 TCGA-F4-6856-01 12 89918481 89918481 G A GALNT4 5'UTR 0.34 TCGA-F4-6856-01 12 9009913 9009913 G A A2ML1 Missense_Mutation p.R1001Q 0.25 deleterious(0.04) benign(0.024) TCGA-F4-6856-01 12 93131155 93131155 A G PLEKHG7 Intron 0.31 TCGA-F4-6856-01 12 93244914 93244914 T - EEA1 Frame_Shift_Del p.K257Nfs*13 0.24 TCGA-F4-6856-01 12 95479453 95479454 - A FGD6 Intron 0.37 TCGA-F4-6856-01 12 9751176 9751176 A G KLRB1 Silent p.T111T 0.07 TCGA-F4-6856-01 12 9907051 9907051 G A CD69 Intron 0.35 TCGA-F4-6856-01 13 113750853 113750853 G A MCF2L Intron 0.32 TCGA-F4-6856-01 13 113965032 113965032 A G LAMP1 Missense_Mutation p.T138A 0.45 tolerated(0.15) benign(0.271) TCGA-F4-6856-01 13 20978338 20978338 G A CRYL1 Missense_Mutation p.A297V 0.32 deleterious_low_confidence(0) benign(0.17) TCGA-F4-6856-01 13 21265217 21265217 G A IFT88 Missense_Mutation p.G802D 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-F4-6856-01 13 24798544 24798544 G A SPATA13 Missense_Mutation p.A493T 0.32 tolerated_low_confidence(0.78) benign(0.058) TCGA-F4-6856-01 13 25672306 25672306 A - PABPC3 3'UTR 0.39 TCGA-F4-6856-01 13 28519601 28519601 A G ATP5EP2 3'UTR 0.10 TCGA-F4-6856-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.12 TCGA-F4-6856-01 13 28771446 28771446 T C PAN3 Missense_Mutation p.M272T 0.21 deleterious_low_confidence(0.01) benign(0.001) TCGA-F4-6856-01 13 28841312 28841312 C T PAN3 Missense_Mutation p.R552C 0.27 deleterious(0.01) probably_damaging(1) TCGA-F4-6856-01 13 33686006 33686006 G T STARD13 Missense_Mutation p.T839N 0.35 tolerated(0.12) possibly_damaging(0.703) TCGA-F4-6856-01 13 33760201 33760201 C A STARD13 Intron 0.33 TCGA-F4-6856-01 13 36909271 36909272 - A SPG20 Frame_Shift_Ins p.V233Cfs*8 0.17 TCGA-F4-6856-01 13 42875625 42875625 A C AKAP11 Missense_Mutation p.T915P 0.30 tolerated(0.27) benign(0.005) TCGA-F4-6856-01 13 46946316 46946316 G A KIAA0226L Silent p.L99L 0.41 TCGA-F4-6856-01 13 52676386 52676386 G A NEK5 Nonsense_Mutation p.Q218* 0.14 TCGA-F4-6856-01 13 53313938 53313938 C T LECT1 5'Flank 0.23 TCGA-F4-6856-01 13 67802200 67802200 G A PCDH9 Silent p.L125L 0.27 TCGA-F4-6856-01 13 76415956 76415956 C T LMO7 Missense_Mutation p.L1057F 0.38 deleterious(0) possibly_damaging(0.714) TCGA-F4-6856-01 13 77786240 77786240 G A MYCBP2 Missense_Mutation p.A1000V 0.23 benign(0.118) TCGA-F4-6856-01 13 78337435 78337435 A T SLAIN1 3'UTR 0.25 TCGA-F4-6856-01 13 79915342 79915342 G A RBM26 Silent p.D789D 0.24 TCGA-F4-6856-01 13 96205035 96205035 G A CLDN10 Missense_Mutation p.A10T 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-F4-6856-01 14 100119003 100119003 T C HHIPL1 Missense_Mutation p.L233P 0.28 deleterious(0) probably_damaging(0.996) TCGA-F4-6856-01 14 101005425 101005425 G - BEGAIN Frame_Shift_Del p.Y222Tfs*30 0.09 TCGA-F4-6856-01 14 104124083 104124083 A - KLC1 Frame_Shift_Del p.K156Nfs*65 0.30 TCGA-F4-6856-01 14 105169540 105169540 G A INF2 Missense_Mutation p.A164T 0.17 tolerated(0.26) probably_damaging(1) TCGA-F4-6856-01 14 105173980 105173980 C T INF2 Missense_Mutation p.P459L 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-F4-6856-01 14 20403849 20403849 G T OR4K1 Missense_Mutation p.M8I 0.08 tolerated(0.32) benign(0) TCGA-F4-6856-01 14 20586243 20586243 A G OR4K17 Silent p.V226V 0.29 TCGA-F4-6856-01 14 23345341 23345341 G A LRP10 Missense_Mutation p.R395H 0.36 tolerated(0.14) benign(0.054) TCGA-F4-6856-01 14 23346254 23346254 C T LRP10 Nonsense_Mutation p.R554* 0.27 TCGA-F4-6856-01 14 23528419 23528419 T C ACIN1 Missense_Mutation p.K1322E 0.28 unknown(0) TCGA-F4-6856-01 14 24626595 24626595 C T RNF31 Missense_Mutation p.L864F 0.27 deleterious(0) probably_damaging(0.961) TCGA-F4-6856-01 14 24879215 24879215 T C NYNRIN Missense_Mutation p.F739L 0.30 tolerated_low_confidence(0.66) benign(0.001) TCGA-F4-6856-01 14 24898055 24898055 G - CBLN3 Frame_Shift_Del p.P69Lfs*35 0.22 TCGA-F4-6856-01 14 36986894 36986894 G A NKX2-1 Silent p.G265G 0.33 TCGA-F4-6856-01 14 38681168 38681168 G A SSTR1 3'UTR 0.08 TCGA-F4-6856-01 14 50118039 50118039 A G POLE2 Missense_Mutation p.M423T 0.34 deleterious(0) possibly_damaging(0.627) TCGA-F4-6856-01 14 55511238 55511238 A G SOCS4 3'UTR 0.10 TCGA-F4-6856-01 14 57706335 57706335 C T EXOC5 Missense_Mutation p.A170T 0.31 deleterious(0.01) benign(0.396) TCGA-F4-6856-01 14 64488703 64488704 - A SYNE2 Frame_Shift_Ins p.S1830Kfs*9 0.33 TCGA-F4-6856-01 14 65220411 65220411 G A SPTB Missense_Mutation p.T2149M 0.41 tolerated(0.11) benign(0.018) TCGA-F4-6856-01 14 67814169 67814169 A G ATP6V1D Silent p.G103G 0.33 TCGA-F4-6856-01 14 68963894 68963894 G A RAD51B Intron 0.34 TCGA-F4-6856-01 14 69676347 69676347 C - EXD2 Frame_Shift_Del p.P55Lfs*26 0.26 TCGA-F4-6856-01 14 74824125 74824125 C T VRTN Silent p.H213H 0.21 TCGA-F4-6856-01 14 75483871 75483871 C T MLH3 Missense_Mutation p.A1426T 0.23 deleterious(0.04) benign(0.043) TCGA-F4-6856-01 14 76447267 76447267 G A TGFB3 5'UTR 0.37 TCGA-F4-6856-01 14 90450920 90450920 G A TDP1 Silent p.S315S 0.32 TCGA-F4-6856-01 14 91806306 91806306 C T CCDC88C Silent p.P182P 0.35 TCGA-F4-6856-01 14 93712451 93712451 G - BTBD7 Frame_Shift_Del p.P768Qfs*53 0.24 TCGA-F4-6856-01 14 93760654 93760654 G A BTBD7 Missense_Mutation p.R238C 0.07 deleterious(0.01) possibly_damaging(0.908) TCGA-F4-6856-01 14 96137757 96137757 G A TCL6 RNA 0.15 TCGA-F4-6856-01 15 25616531 25616531 C T UBE3A Missense_Mutation p.V267M 0.32 tolerated(0.28) benign(0.103) TCGA-F4-6856-01 15 28090108 28090108 A - OCA2 Frame_Shift_Del p.F810Sfs*7 0.24 TCGA-F4-6856-01 15 29406124 29406124 C T APBA2 Missense_Mutation p.R695C 0.44 deleterious(0) probably_damaging(0.988) TCGA-F4-6856-01 15 32928332 32928332 T A ARHGAP11A Intron 0.22 TCGA-F4-6856-01 15 33022990 33022990 C - GREM1 Frame_Shift_Del p.P35Rfs*49 0.25 TCGA-F4-6856-01 15 33926794 33926794 A G RYR3 Missense_Mutation p.K1012R 0.32 probably_damaging(0.989) TCGA-F4-6856-01 15 34649080 34649080 C - NUTM1 Frame_Shift_Del p.Q931Kfs*53 0.25 TCGA-F4-6856-01 15 34673653 34673653 G A GOLGA8A Missense_Mutation p.P591S 0.21 deleterious(0) probably_damaging(0.994) TCGA-F4-6856-01 15 39546293 39546294 - A C15orf54 3'UTR 0.24 TCGA-F4-6856-01 15 39885659 39885659 C T THBS1 Silent p.D1019D 0.31 TCGA-F4-6856-01 15 40330494 40330496 TCT - SRP14 In_Frame_Del p.K66del 0.31 TCGA-F4-6856-01 15 42137252 42137252 C T PLA2G4B Missense_Mutation p.A639V 0.35 tolerated(0.38) benign(0.131) TCGA-F4-6856-01 15 42454271 42454271 T C VPS39 Missense_Mutation p.N807D 0.30 tolerated(0.63) benign(0.005) TCGA-F4-6856-01 15 43367258 43367258 A G UBR1 Silent p.C149C 0.36 TCGA-F4-6856-01 15 43508525 43508525 C T EPB42 Missense_Mutation p.R76H 0.29 tolerated(0.23) benign(0.008) TCGA-F4-6856-01 15 43658353 43658353 G - ZSCAN29 Frame_Shift_Del p.Q393Rfs*102 0.13 TCGA-F4-6856-01 15 43712600 43712600 G A TP53BP1 Silent p.Y1528Y 0.38 TCGA-F4-6856-01 15 43813572 43813572 C T MAP1A 5'UTR 0.33 TCGA-F4-6856-01 15 43940873 43940873 C T CATSPER2 5'UTR 0.38 TCGA-F4-6856-01 15 48443733 48443733 G A MYEF2 Nonsense_Mutation p.R415* 0.30 TCGA-F4-6856-01 15 48764794 48764794 T G FBN1 Missense_Mutation p.E1430D 0.32 benign(0.058) TCGA-F4-6856-01 15 48802279 48802279 G A FBN1 Missense_Mutation p.A559V 0.18 possibly_damaging(0.789) TCGA-F4-6856-01 15 50526077 50526077 G A SLC27A2 Missense_Mutation p.R523H 0.22 deleterious(0) possibly_damaging(0.902) TCGA-F4-6856-01 15 52521389 52521389 C - MYO5C Frame_Shift_Del p.E1050Sfs*8 0.23 TCGA-F4-6856-01 15 57731497 57731497 C T CGNL1 Missense_Mutation p.R434C 0.32 tolerated(0.07) benign(0.39) TCGA-F4-6856-01 15 58889627 58889627 T - ADAM10 3'UTR 0.10 TCGA-F4-6856-01 15 62239501 62239501 G A VPS13C Silent p.S1589S 0.21 TCGA-F4-6856-01 15 65209639 65209639 C T ANKDD1A Missense_Mutation p.R65C 0.25 deleterious(0) probably_damaging(0.932) TCGA-F4-6856-01 15 66782947 66782947 C T MAP2K1 Silent p.G392G 0.21 TCGA-F4-6856-01 15 70347501 70347501 C T TLE3 Missense_Mutation p.V492M 0.15 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 15 70961674 70961674 C T UACA Missense_Mutation p.R450Q 0.28 tolerated(0.07) benign(0.033) TCGA-F4-6856-01 15 73408965 73408965 T C NEO1 Missense_Mutation p.L72S 0.31 deleterious(0) probably_damaging(0.99) TCGA-F4-6856-01 15 73616463 73616463 C T HCN4 Missense_Mutation p.E704K 0.33 deleterious(0) unknown(0) TCGA-F4-6856-01 15 74336708 74336708 C T PML Missense_Mutation p.R670C 0.23 tolerated(0.06) benign(0.017) TCGA-F4-6856-01 15 75132655 75132655 C T ULK3 Missense_Mutation p.A206T 0.24 tolerated(0.11) benign(0.097) TCGA-F4-6856-01 15 75652318 75652320 AGA - MAN2C1 In_Frame_Del p.L573del 0.27 TCGA-F4-6856-01 15 78486312 78486312 C T ACSBG1 Silent p.P168P 0.32 TCGA-F4-6856-01 15 78640465 78640465 C A CRABP1 3'UTR 0.30 TCGA-F4-6856-01 15 78783023 78783024 CT - IREB2 Frame_Shift_Del p.S749Cfs*14 0.23 TCGA-F4-6856-01 15 78894164 78894164 T C CHRNA3 Missense_Mutation p.T274A 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-F4-6856-01 15 79215391 79215392 - T CTSH Frame_Shift_Ins p.N292Kfs*119 0.32 TCGA-F4-6856-01 15 81517758 81517758 C T IL16 Silent p.R6R 0.19 TCGA-F4-6856-01 15 83807854 83807854 C T HDGFRP3 3'UTR 0.21 TCGA-F4-6856-01 15 85666364 85666364 G A PDE8A Silent p.E675E 0.25 TCGA-F4-6856-01 15 89010600 89010600 C T MRPL46 Silent p.A3A 0.33 TCGA-F4-6856-01 15 89444961 89444961 C T MFGE8 Missense_Mutation p.A231T 0.22 deleterious(0.04) benign(0.002) TCGA-F4-6856-01 15 90768364 90768364 C T SEMA4B Silent p.R453R 0.30 TCGA-F4-6856-01 15 93563343 93563343 T C CHD2 Missense_Mutation p.Y1670H 0.20 tolerated_low_confidence(0.07) possibly_damaging(0.593) TCGA-F4-6856-01 16 10576085 10576085 G A ATF7IP2 Silent p.G676G 0.38 TCGA-F4-6856-01 16 10996514 10996514 G A CIITA Splice_Site p.X210_splice 0.29 TCGA-F4-6856-01 16 11772616 11772616 T - SNN 3'UTR 0.15 TCGA-F4-6856-01 16 14042061 14042061 G A ERCC4 Missense_Mutation p.V870I 0.25 tolerated(0.96) benign(0.012) TCGA-F4-6856-01 16 1510879 1510879 G T CLCN7 Missense_Mutation p.A141D 0.28 deleterious(0) probably_damaging(0.935) TCGA-F4-6856-01 16 16235115 16235115 G A ABCC1 Missense_Mutation p.A1525T 0.41 deleterious(0.01) possibly_damaging(0.786) TCGA-F4-6856-01 16 17232260 17232260 G A XYLT1 Silent p.C572C 0.36 TCGA-F4-6856-01 16 19130715 19130715 G - ITPRIPL2 3'UTR 0.28 TCGA-F4-6856-01 16 19725891 19725891 T - KNOP1 Frame_Shift_Del p.K156Rfs*57 0.24 TCGA-F4-6856-01 16 2028568 2028568 G A TBL3 Missense_Mutation p.R770Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 16 21014467 21014467 A G DNAH3 Missense_Mutation p.Y2029H 0.28 tolerated(0.54) possibly_damaging(0.593) TCGA-F4-6856-01 16 22144282 22144282 G A VWA3A Missense_Mutation p.C645Y 0.26 deleterious(0) probably_damaging(0.968) TCGA-F4-6856-01 16 2231521 2231522 - C CASKIN1 Frame_Shift_Ins p.L618Pfs*10 0.30 TCGA-F4-6856-01 16 22335865 22335865 C A POLR3E Silent p.A390A 0.13 TCGA-F4-6856-01 16 22344964 22344964 G T POLR3E Splice_Site p.X691_splice 0.31 TCGA-F4-6856-01 16 23555930 23555930 C T EARS2 Silent p.A130A 0.38 TCGA-F4-6856-01 16 27373979 27373979 T C IL4R Missense_Mutation p.S436P 0.22 tolerated(0.31) benign(0.002) TCGA-F4-6856-01 16 27751677 27751677 T C KIAA0556 Missense_Mutation p.C687R 0.25 tolerated(0.33) benign(0.35) TCGA-F4-6856-01 16 28943879 28943879 C - CD19 Frame_Shift_Del p.S103Lfs*27 0.38 TCGA-F4-6856-01 16 29680899 29680899 A - SPN 3'UTR 0.36 TCGA-F4-6856-01 16 30017983 30017983 A G DOC2A Silent p.D298D 0.35 TCGA-F4-6856-01 16 30750658 30750658 C T SRCAP Silent p.S3099S 0.31 TCGA-F4-6856-01 16 30960684 30960684 C T ORAI3 Missense_Mutation p.A25V 0.43 tolerated_low_confidence(0.42) benign(0.223) TCGA-F4-6856-01 16 424004 424004 C T TMEM8A Splice_Site p.X634_splice 0.38 TCGA-F4-6856-01 16 4562977 4562977 G A CDIP1 Silent p.G110G 0.14 TCGA-F4-6856-01 16 4731714 4731714 C A MGRN1 Missense_Mutation p.A432D 0.32 deleterious(0.03) benign(0.12) TCGA-F4-6856-01 16 49671863 49671863 G A ZNF423 Silent p.D400D 0.20 TCGA-F4-6856-01 16 50655558 50655560 AGA - NKD1 In_Frame_Del p.K104del 0.31 TCGA-F4-6856-01 16 50750581 50750581 C T NOD2 Missense_Mutation p.A849V 0.25 deleterious(0) probably_damaging(0.91) TCGA-F4-6856-01 16 5081826 5081826 C T NAGPA Missense_Mutation p.G201E 0.22 probably_damaging(1) TCGA-F4-6856-01 16 55616946 55616946 C T LPCAT2 Missense_Mutation p.T524I 0.28 tolerated(0.43) benign(0) TCGA-F4-6856-01 16 57095551 57095551 C T NLRC5 Silent p.G1364G 0.24 TCGA-F4-6856-01 16 57416266 57416266 G A CX3CL1 Silent p.T172T 0.20 TCGA-F4-6856-01 16 61687935 61687935 G A CDH8 Silent p.D659D 0.22 TCGA-F4-6856-01 16 65038745 65038745 C T CDH11 Missense_Mutation p.A10T 0.27 tolerated(0.37) benign(0.002) TCGA-F4-6856-01 16 66575787 66575787 C T TK2 Missense_Mutation p.V76I 0.39 tolerated(1) benign(0.001) TCGA-F4-6856-01 16 66804002 66804002 A G CCDC79 Silent p.L495L 0.20 TCGA-F4-6856-01 16 675929 675929 G A RAB40C Missense_Mutation p.G125R 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-F4-6856-01 16 675983 675983 G A RAB40C Missense_Mutation p.A143T 0.33 tolerated(0.16) benign(0.291) TCGA-F4-6856-01 16 67761240 67761240 G A RANBP10 Silent p.S574S 0.26 TCGA-F4-6856-01 16 68156952 68156952 G A NFATC3 Missense_Mutation p.G389D 0.29 deleterious(0.05) possibly_damaging(0.484) TCGA-F4-6856-01 16 68390642 68390642 A G PRMT7 Missense_Mutation p.Y617C 0.30 deleterious(0) probably_damaging(0.995) TCGA-F4-6856-01 16 68835781 68835781 C - CDH1 Frame_Shift_Del p.P126Rfs*89 0.26 TCGA-F4-6856-01 16 71686813 71686813 G A PHLPP2 Silent p.G899G 0.20 TCGA-F4-6856-01 16 72827997 72827997 C A ZFHX3 Missense_Mutation p.A2862S 0.25 unknown(0) TCGA-F4-6856-01 16 72828553 72828553 G A ZFHX3 Silent p.H2676H 0.26 TCGA-F4-6856-01 16 74378744 74378744 C A RP11-252A24.2 RNA 0.10 TCGA-F4-6856-01 16 74516931 74516931 G T GLG1 Silent p.R555R 0.37 TCGA-F4-6856-01 16 773931 773931 G A CCDC78 Silent p.G353G 0.09 TCGA-F4-6856-01 16 78134069 78134069 A - WWOX Intron 0.10 TCGA-F4-6856-01 16 78458792 78458792 G A WWOX Missense_Mutation p.A211T 0.36 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 16 784848 784848 C T NARFL Missense_Mutation p.A155T 0.11 tolerated(1) benign(0.006) TCGA-F4-6856-01 16 81194439 81194439 C T PKD1L2 RNA 0.26 TCGA-F4-6856-01 16 820105 820105 G - MSLNL Frame_Shift_Del p.S961Afs*80 0.31 TCGA-F4-6856-01 16 837383 837383 G A RPUSD1 Missense_Mutation p.R93W 0.37 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 16 84214763 84214763 A - TAF1C Frame_Shift_Del p.R425Vfs*43 0.21 TCGA-F4-6856-01 16 87367768 87367768 C T FBXO31 Missense_Mutation p.R374H 0.33 tolerated(0.63) benign(0.002) TCGA-F4-6856-01 16 87452464 87452464 G A ZCCHC14 Silent p.G226G 0.33 TCGA-F4-6856-01 16 88666204 88666204 A - ZC3H18 Frame_Shift_Del p.A315Qfs*18 0.19 TCGA-F4-6856-01 16 88780888 88780888 G A CTU2 Missense_Mutation p.A399T 0.21 tolerated(0.74) benign(0.002) TCGA-F4-6856-01 16 88800327 88800327 C T PIEZO1 Silent p.T772T 0.15 TCGA-F4-6856-01 16 90075797 90075797 C T DBNDD1 Missense_Mutation p.V45I 0.14 tolerated_low_confidence(0.14) benign(0.405) TCGA-F4-6856-01 16 9010359 9010359 C A USP7 Silent p.V302V 0.30 TCGA-F4-6856-01 17 10297577 10297577 G T MYH8 Missense_Mutation p.L1719I 0.14 deleterious(0.04) probably_damaging(0.991) TCGA-F4-6856-01 17 10543114 10543114 G A MYH3 Silent p.S896S 0.29 TCGA-F4-6856-01 17 11881648 11881649 - A ZNF18 Frame_Shift_Ins p.H426Sfs*40 0.24 TCGA-F4-6856-01 17 12656505 12656506 - C MYOCD Frame_Shift_Ins p.Q636Sfs*107 0.26 TCGA-F4-6856-01 17 12888210 12888210 G A ARHGAP44 Missense_Mutation p.E768K 0.17 deleterious_low_confidence(0) benign(0.081) TCGA-F4-6856-01 17 12897037 12897037 G A ELAC2 Silent p.S740S 0.12 TCGA-F4-6856-01 17 1401384 1401384 C T INPP5K Missense_Mutation p.R270H 0.23 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 17 1563231 1563231 C T PRPF8 Missense_Mutation p.R1617Q 0.06 tolerated(0.1) probably_damaging(0.999) TCGA-F4-6856-01 17 15950266 15950266 C A NCOR1 Missense_Mutation p.M2226I 0.21 benign(0) TCGA-F4-6856-01 17 1619823 1619823 G T MIR22HG 5'Flank 0.43 TCGA-F4-6856-01 17 18863920 18863920 C A SLC5A10 Nonsense_Mutation p.Y136* 0.25 TCGA-F4-6856-01 17 19284470 19284470 C T MAPK7 Silent p.A316A 0.34 TCGA-F4-6856-01 17 1960068 1960068 C T HIC1 Silent p.C47C 0.29 TCGA-F4-6856-01 17 1961656 1961656 C T HIC1 Missense_Mutation p.R577C 0.43 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 17 21318735 21318735 C T KCNJ12 Silent p.G27G 0.17 TCGA-F4-6856-01 17 2298168 2298168 C - MNT Splice_Site p.X218_splice 0.25 TCGA-F4-6856-01 17 2298447 2298447 G A MNT Silent p.G125G 0.33 TCGA-F4-6856-01 17 26851050 26851050 C T FOXN1 Silent p.G21G 0.27 TCGA-F4-6856-01 17 27402308 27402308 C G TIAF1 5'UTR 0.31 TCGA-F4-6856-01 17 27889950 27889950 C T ABHD15 Missense_Mutation p.D346N 0.35 deleterious(0) probably_damaging(0.968) TCGA-F4-6856-01 17 29111121 29111122 - T CRLF3 3'UTR 0.33 TCGA-F4-6856-01 17 293214 293214 G A FAM101B Missense_Mutation p.A59V 0.38 tolerated(0.07) benign(0.033) TCGA-F4-6856-01 17 29559778 29559778 G A NF1 Silent p.A1125A 0.16 TCGA-F4-6856-01 17 30325774 30325774 C A SUZ12 Missense_Mutation p.L658I 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-F4-6856-01 17 31439004 31439005 - C ASIC2 Frame_Shift_Ins p.T264Dfs*15 0.38 TCGA-F4-6856-01 17 3301267 3301267 C T OR1E1 Silent p.A146A 0.34 TCGA-F4-6856-01 17 3336457 3336457 A G OR1E2 Missense_Mutation p.Y227H 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F4-6856-01 17 34171885 34171886 - G TAF15 Frame_Shift_Ins p.Y531Lfs*56 0.32 TCGA-F4-6856-01 17 34344915 34344915 G A CCL23 Missense_Mutation p.A7V 0.32 tolerated(0.11) benign(0.05) TCGA-F4-6856-01 17 3446880 3446880 C T TRPV3 Silent p.R118R 0.28 TCGA-F4-6856-01 17 34871746 34871748 TCC - MYO19 In_Frame_Del p.R167del 0.25 TCGA-F4-6856-01 17 3493115 3493115 T C SHPK Missense_Mutation p.T344A 0.21 tolerated(0.17) benign(0.001) TCGA-F4-6856-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.25 TCGA-F4-6856-01 17 35880281 35880282 - T SYNRG Frame_Shift_Ins p.A1272Sfs*41 0.20 TCGA-F4-6856-01 17 36484821 36484821 C A GPR179 Missense_Mutation p.G1544V 0.37 tolerated(0.14) benign(0.08) TCGA-F4-6856-01 17 36552222 36552222 C T SOCS7 3'UTR 0.41 TCGA-F4-6856-01 17 36927505 36927505 G T PIP4K2B Silent p.I276I 0.33 TCGA-F4-6856-01 17 37006411 37006411 C T RPL23 Missense_Mutation p.A133T 0.26 deleterious(0.01) benign(0.446) TCGA-F4-6856-01 17 37453379 37453379 C T FBXL20 Splice_Site p.X133_splice 0.06 TCGA-F4-6856-01 17 37864666 37864666 G A ERBB2 Silent p.Q106Q 0.14 TCGA-F4-6856-01 17 39324041 39324041 G T KRTAP4-3 Silent p.T128T 0.08 TCGA-F4-6856-01 17 39578364 39578364 G A KRT37 Missense_Mutation p.T326M 0.21 deleterious(0.04) benign(0.179) TCGA-F4-6856-01 17 39673142 39673142 A G KRT15 Missense_Mutation p.L219P 0.38 deleterious(0) probably_damaging(0.997) TCGA-F4-6856-01 17 40825291 40825291 G A PLEKHH3 Silent p.A224A 0.16 TCGA-F4-6856-01 17 41570293 41570293 C T DHX8 Missense_Mutation p.R250W 0.37 deleterious(0.01) benign(0.006) TCGA-F4-6856-01 17 41606973 41606973 G A ETV4 Silent p.L343L 0.16 TCGA-F4-6856-01 17 42157831 42157831 G A HDAC5 Silent p.N922N 0.26 TCGA-F4-6856-01 17 42169649 42169649 G A HDAC5 Missense_Mutation p.S309L 0.24 deleterious(0.01) benign(0.165) TCGA-F4-6856-01 17 43473452 43473452 C A ARHGAP27 Missense_Mutation p.W420C 0.33 deleterious(0) probably_damaging(0.919) TCGA-F4-6856-01 17 4446413 4446413 C T MYBBP1A Missense_Mutation p.R896H 0.22 tolerated(0.57) benign(0.009) TCGA-F4-6856-01 17 44770276 44770276 C A NSF Missense_Mutation p.A318D 0.08 tolerated(1) benign(0.111) TCGA-F4-6856-01 17 44952541 44952541 G A WNT9B Missense_Mutation p.A137T 0.45 tolerated(0.12) possibly_damaging(0.636) TCGA-F4-6856-01 17 45102082 45102082 G T RP11-156P1.3 Intron 0.15 TCGA-F4-6856-01 17 45759854 45759854 C T KPNB1 3'UTR 0.30 TCGA-F4-6856-01 17 46214436 46214436 G A SKAP1 Intron 0.16 TCGA-F4-6856-01 17 46685348 46685348 G A HOXB7 Silent p.I170I 0.23 TCGA-F4-6856-01 17 4923822 4923822 C T KIF1C Missense_Mutation p.R596C 0.25 deleterious(0) possibly_damaging(0.876) TCGA-F4-6856-01 17 56060166 56060166 T C VEZF1 Missense_Mutation p.N208D 0.11 tolerated(0.64) possibly_damaging(0.6) TCGA-F4-6856-01 17 56274319 56274319 G A EPX Missense_Mutation p.R274H 0.38 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 17 56679907 56679908 - T TEX14 Frame_Shift_Ins p.A467Sfs*11 0.22 TCGA-F4-6856-01 17 60072518 60072519 - T MED13 Frame_Shift_Ins p.H726Tfs*9 0.27 TCGA-F4-6856-01 17 61661048 61661048 C T DCAF7 Intron 0.20 TCGA-F4-6856-01 17 62018191 62018191 C A SCN4A Missense_Mutation p.W1817C 0.26 tolerated_low_confidence(0.18) benign(0.112) TCGA-F4-6856-01 17 63010731 63010731 G A GNA13 Nonsense_Mutation p.R260* 0.34 TCGA-F4-6856-01 17 6329030 6329030 C T AIPL1 Missense_Mutation p.R302H 0.33 tolerated(0.14) benign(0.002) TCGA-F4-6856-01 17 65928032 65928032 C T BPTF Silent p.I2052I 0.25 TCGA-F4-6856-01 17 66982448 66982448 G A ABCA9 Silent p.S1355S 0.32 TCGA-F4-6856-01 17 6917054 6917054 G T RNASEK Missense_Mutation p.D89Y 0.33 deleterious(0.01) probably_damaging(0.963) TCGA-F4-6856-01 17 6927746 6927746 G A BCL6B Missense_Mutation p.R143H 0.12 tolerated(0.07) benign(0.32) TCGA-F4-6856-01 17 7120583 7120583 C G DLG4 Intron 0.25 TCGA-F4-6856-01 17 72832175 72832175 C T TMEM104 Silent p.C280C 0.29 TCGA-F4-6856-01 17 72850836 72850836 G - GRIN2C Frame_Shift_Del p.K133Rfs*59 0.34 TCGA-F4-6856-01 17 72999295 72999295 G A CDR2L Missense_Mutation p.R175H 0.14 tolerated(0.5) possibly_damaging(0.763) TCGA-F4-6856-01 17 73237515 73237515 G A GGA3 Silent p.G304G 0.33 TCGA-F4-6856-01 17 7323961 7323961 C T SPEM1 Missense_Mutation p.R54C 0.35 deleterious(0) possibly_damaging(0.738) TCGA-F4-6856-01 17 7345915 7345915 G A FGF11 Silent p.P137P 0.38 TCGA-F4-6856-01 17 7386237 7386237 G T SLC35G6 Missense_Mutation p.G312W 0.26 deleterious(0) probably_damaging(0.993) TCGA-F4-6856-01 17 73870624 73870624 G A TRIM47 Silent p.D619D 0.25 TCGA-F4-6856-01 17 74042135 74042135 T C SRP68 Missense_Mutation p.Y428C 0.24 deleterious(0.03) possibly_damaging(0.882) TCGA-F4-6856-01 17 74287108 74287108 G T QRICH2 Missense_Mutation p.L1068M 0.24 deleterious(0) probably_damaging(0.979) TCGA-F4-6856-01 17 74401380 74401380 C T UBE2O Silent p.T165T 0.26 TCGA-F4-6856-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.38 TCGA-F4-6856-01 17 76823307 76823307 G A USP36 Intron 0.47 TCGA-F4-6856-01 17 7689577 7689577 G A DNAH2 Missense_Mutation p.G2089S 0.27 benign(0.327) TCGA-F4-6856-01 17 77807715 77807716 - C CBX4 3'UTR 0.29 TCGA-F4-6856-01 17 78157817 78157817 G A CARD14 Missense_Mutation p.R152Q 0.26 tolerated(0.62) benign(0.001) TCGA-F4-6856-01 17 78169065 78169065 C - CARD14 Frame_Shift_Del p.S480Afs*49 0.30 TCGA-F4-6856-01 17 78320488 78320488 G A RNF213 Missense_Mutation p.A2785T 0.44 probably_damaging(1) TCGA-F4-6856-01 17 78899218 78899218 G A RPTOR Missense_Mutation p.A953T 0.36 tolerated(0.62) benign(0.001) TCGA-F4-6856-01 17 79684472 79684472 G A SLC25A10 Missense_Mutation p.G193E 0.25 deleterious(0.04) benign(0.303) TCGA-F4-6856-01 17 7979986 7979987 - C ALOX12B Frame_Shift_Ins p.L451Afs*27 0.27 TCGA-F4-6856-01 17 79803764 79803764 T - P4HB Frame_Shift_Del p.N387Tfs*118 0.23 TCGA-F4-6856-01 17 79990881 79990881 C T RAC3 Missense_Mutation p.A95V 0.25 tolerated_low_confidence(0.09) benign(0.045) TCGA-F4-6856-01 17 80013096 80013096 C T GPS1 Missense_Mutation p.A289V 0.15 deleterious(0.01) possibly_damaging(0.784) TCGA-F4-6856-01 17 80053234 80053234 A G FASN Missense_Mutation p.L81P 0.36 deleterious(0.03) probably_damaging(0.968) TCGA-F4-6856-01 17 8138431 8138431 C T CTC1 Missense_Mutation p.R460H 0.36 tolerated(0.44) benign(0.033) TCGA-F4-6856-01 18 12254812 12254812 C T CIDEA Intron 0.15 TCGA-F4-6856-01 18 14837216 14837216 G A ANKRD30B Missense_Mutation p.A833T 0.27 tolerated(0.25) benign(0.004) TCGA-F4-6856-01 18 21136495 21136495 G A NPC1 Silent p.C346C 0.25 TCGA-F4-6856-01 18 21759758 21759758 C T OSBPL1A Nonsense_Mutation p.W618* 0.23 TCGA-F4-6856-01 18 23969975 23969975 G A TAF4B Silent p.%3D 0.49 TCGA-F4-6856-01 18 2940677 2940679 TTC - LPIN2 In_Frame_Del p.E208del 0.26 TCGA-F4-6856-01 18 2945744 2945744 C T LPIN2 Intron 0.34 TCGA-F4-6856-01 18 30092580 30092580 C A WBP11P1 RNA 0.30 TCGA-F4-6856-01 18 32889101 32889101 G T ZNF271 RNA 0.26 TCGA-F4-6856-01 18 331763 331763 T - COLEC12 Frame_Shift_Del p.K656Nfs*4 0.24 TCGA-F4-6856-01 18 42533075 42533075 A G SETBP1 Missense_Mutation p.D1257G 0.26 deleterious(0.01) possibly_damaging(0.602) TCGA-F4-6856-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.13 TCGA-F4-6856-01 18 47809047 47809047 G A CXXC1 Silent p.R633R 0.22 TCGA-F4-6856-01 18 5291047 5291047 T - ZBTB14 Frame_Shift_Del p.K387Sfs*18 0.25 TCGA-F4-6856-01 18 54603098 54603098 G A WDR7 Missense_Mutation p.A1265T 0.37 deleterious(0) probably_damaging(0.957) TCGA-F4-6856-01 18 56008342 56008342 C T NEDD4L Missense_Mutation p.R400C 0.32 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 18 56587229 56587229 C A ZNF532 Silent p.V570V 0.23 TCGA-F4-6856-01 18 66358382 66358382 A - TMX3 Intron 0.36 TCGA-F4-6856-01 18 67994371 67994371 T - SOCS6 3'UTR 0.09 TCGA-F4-6856-01 18 74154065 74154065 C T ZNF516 Missense_Mutation p.A316T 0.40 tolerated(0.1) probably_damaging(0.998) TCGA-F4-6856-01 18 77659188 77659188 C T KCNG2 Missense_Mutation p.A258V 0.29 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 18 9255739 9255739 G A ANKRD12 Missense_Mutation p.R825Q 0.30 deleterious_low_confidence(0.03) benign(0.206) TCGA-F4-6856-01 18 9535902 9535902 G A RALBP1 Silent p.S645S 0.26 TCGA-F4-6856-01 19 10160712 10160712 C T C3P1 RNA 0.23 TCGA-F4-6856-01 19 10248607 10248607 C T DNMT1 Silent p.S1398S 0.32 TCGA-F4-6856-01 19 10404565 10404565 G A ICAM5 Missense_Mutation p.E553K 0.31 tolerated(0.11) benign(0.021) TCGA-F4-6856-01 19 10428176 10428176 C T RAVER1 Missense_Mutation p.G742D 0.18 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 19 10663685 10663685 G A ATG4D Missense_Mutation p.R456H 0.27 tolerated(0.07) benign(0.444) TCGA-F4-6856-01 19 1089935 1089935 C A POLR2E Missense_Mutation p.R172M 0.35 deleterious(0) probably_damaging(0.989) TCGA-F4-6856-01 19 11343986 11343986 C T DOCK6 Missense_Mutation p.A871T 0.14 tolerated(0.58) benign(0.001) TCGA-F4-6856-01 19 11591456 11591457 - G ELAVL3 5'UTR 0.25 TCGA-F4-6856-01 19 12024224 12024224 A - ZNF69 Frame_Shift_Del 0.22 TCGA-F4-6856-01 19 13255223 13255223 G A STX10 3'UTR 0.35 TCGA-F4-6856-01 19 1398994 1398994 C - GAMT Frame_Shift_Del p.G164Afs*14 0.12 TCGA-F4-6856-01 19 14048771 14048771 C T PODNL1 Missense_Mutation p.A25T 0.28 tolerated_low_confidence(0.65) benign(0.033) TCGA-F4-6856-01 19 1466939 1466939 G A APC2 Silent p.T1213T 0.34 TCGA-F4-6856-01 19 1497805 1497805 C T REEP6 3'UTR 0.27 TCGA-F4-6856-01 19 15536533 15536533 G A WIZ Silent p.G376G 0.18 TCGA-F4-6856-01 19 16275714 16275716 GTT - CIB3 In_Frame_Del p.N119del 0.29 TCGA-F4-6856-01 19 16860656 16860656 G A NWD1 Silent p.L401L 0.28 TCGA-F4-6856-01 19 17631905 17631905 G A PGLS 3'UTR 0.31 TCGA-F4-6856-01 19 17837866 17837866 C T MAP1S Missense_Mutation p.A558V 0.28 tolerated(0.37) benign(0.009) TCGA-F4-6856-01 19 1827476 1827476 A G REXO1 Missense_Mutation p.S438P 0.20 tolerated(0.06) probably_damaging(0.914) TCGA-F4-6856-01 19 19312741 19312741 T G NR2C2AP Missense_Mutation p.K138T 0.47 deleterious(0.01) benign(0.305) TCGA-F4-6856-01 19 2185888 2185888 G A DOT1L Missense_Mutation p.A54T 0.29 deleterious(0.01) probably_damaging(0.939) TCGA-F4-6856-01 19 2225435 2225435 G A DOT1L Silent p.P1215P 0.26 TCGA-F4-6856-01 19 22364242 22364242 C T ZNF676 Missense_Mutation p.V93M 0.23 tolerated(0.2) possibly_damaging(0.749) TCGA-F4-6856-01 19 2351521 2351521 C A LLfos-48D6.1 3'Flank 0.25 TCGA-F4-6856-01 19 23543570 23543570 A G ZNF91 Silent p.T737T 0.22 TCGA-F4-6856-01 19 2807509 2807509 C T THOP1 Missense_Mutation p.A319V 0.31 tolerated(0.13) possibly_damaging(0.501) TCGA-F4-6856-01 19 29698767 29698767 G A UQCRFS1 Silent p.G171G 0.31 TCGA-F4-6856-01 19 30020833 30020833 C T VSTM2B Silent p.D135D 0.27 TCGA-F4-6856-01 19 33350825 33350825 C T SLC7A9 Silent p.A265A 0.28 TCGA-F4-6856-01 19 34685419 34685419 G A LSM14A Missense_Mutation p.R53H 0.21 tolerated(0.05) benign(0.04) TCGA-F4-6856-01 19 34838785 34838785 G T KIAA0355 Missense_Mutation p.G842V 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F4-6856-01 19 35448918 35448918 G A ZNF792 Missense_Mutation p.A614V 0.08 tolerated(0.39) benign(0.007) TCGA-F4-6856-01 19 36370320 36370320 C T APLP1 Missense_Mutation p.R645C 0.38 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 19 36517559 36517559 G A CLIP3 Missense_Mutation p.A164V 0.26 deleterious(0.02) probably_damaging(0.985) TCGA-F4-6856-01 19 36637107 36637107 T C CAPNS1 Missense_Mutation p.L205P 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-F4-6856-01 19 37118181 37118181 A G ZNF382 Missense_Mutation p.E461G 0.12 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 19 3730033 3730033 G A TJP3 Missense_Mutation p.D65N 0.15 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 19 3751023 3751023 G A APBA3 3'UTR 0.32 TCGA-F4-6856-01 19 38028415 38028415 T - ZNF793 Frame_Shift_Del p.C288Vfs*113 0.24 TCGA-F4-6856-01 19 38655332 38655332 G A SIPA1L3 Missense_Mutation p.A1332T 0.23 tolerated(0.37) benign(0.001) TCGA-F4-6856-01 19 38882742 38882742 G A SPRED3 Missense_Mutation p.A112T 0.29 tolerated(0.06) possibly_damaging(0.599) TCGA-F4-6856-01 19 39691057 39691057 C - NCCRP1 Frame_Shift_Del p.T207Rfs*58 0.27 TCGA-F4-6856-01 19 39976381 39976381 G A TIMM50 Silent p.P245P 0.25 TCGA-F4-6856-01 19 40480679 40480679 G T PSMC4 Missense_Mutation p.G206V 0.29 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 19 41249971 41249971 C T C19orf54 Splice_Site p.X216_splice 0.25 TCGA-F4-6856-01 19 42827933 42827933 G A TMEM145 Missense_Mutation p.A465T 0.27 tolerated_low_confidence(0.58) benign(0) TCGA-F4-6856-01 19 43406488 43406488 T - PSG6 3'Flank 0.28 TCGA-F4-6856-01 19 43411091 43411091 A G PSG6 Missense_Mutation p.M408T 0.38 tolerated(0.21) benign(0.005) TCGA-F4-6856-01 19 44117295 44117295 A - SRRM5 Frame_Shift_Del p.N342Tfs*345 0.23 TCGA-F4-6856-01 19 45322943 45322943 G - BCAM Frame_Shift_Del p.G576Afs*20 0.29 TCGA-F4-6856-01 19 45528976 45528976 C T RELB Silent p.S289S 0.29 TCGA-F4-6856-01 19 46281817 46281817 G A DMPK Missense_Mutation p.A182V 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-F4-6856-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.42 TCGA-F4-6856-01 19 49001697 49001697 C - LMTK3 Frame_Shift_Del p.E906Rfs*27 0.16 TCGA-F4-6856-01 19 49136713 49136713 C T DBP Silent p.P250P 0.09 TCGA-F4-6856-01 19 49208372 49208372 T C FUT2 3'UTR 0.35 TCGA-F4-6856-01 19 50376278 50376278 C A AKT1S1 Missense_Mutation p.S112I 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-F4-6856-01 19 504979 504979 C - MADCAM1 3'UTR 0.18 TCGA-F4-6856-01 19 50750330 50750330 G A MYH14 Missense_Mutation p.R427H 0.37 deleterious(0) probably_damaging(0.977) TCGA-F4-6856-01 19 50949210 50949210 C T MYBPC2 Missense_Mutation p.R403C 0.39 deleterious(0) possibly_damaging(0.893) TCGA-F4-6856-01 19 50957607 50957608 - G MYBPC2 Frame_Shift_Ins p.K668Efs*24 0.32 TCGA-F4-6856-01 19 5131963 5131963 G C KDM4B Silent p.R617R 0.22 TCGA-F4-6856-01 19 5221084 5221084 C T PTPRS Missense_Mutation p.V1128I 0.19 tolerated(0.33) benign(0.021) TCGA-F4-6856-01 19 52477771 52477771 T C ZNF350 5'UTR 0.33 TCGA-F4-6856-01 19 52550312 52550312 G A ZNF432 Intron 0.43 TCGA-F4-6856-01 19 52568372 52568372 C T ZNF841 Silent p.G921G 0.10 TCGA-F4-6856-01 19 52825091 52825091 A T ZNF480 Silent p.V196V 0.32 TCGA-F4-6856-01 19 52954491 52954491 G A ZNF578 5'Flank 0.50 TCGA-F4-6856-01 19 52954558 52954558 G A ZNF578 5'Flank 0.44 TCGA-F4-6856-01 19 53761940 53761940 T - VN1R2 Frame_Shift_Del p.S106Hfs*21 0.22 TCGA-F4-6856-01 19 54720952 54720952 A G LILRB3 3'UTR 0.08 TCGA-F4-6856-01 19 54969678 54969678 G A LENG8 Missense_Mutation p.A740T 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-F4-6856-01 19 55222169 55222169 C - AC098784.2 3'Flank 0.31 TCGA-F4-6856-01 19 56089528 56089528 G A ZNF579 Missense_Mutation p.A493V 0.26 tolerated_low_confidence(0.28) benign(0.012) TCGA-F4-6856-01 19 56180972 56180972 C T U2AF2 Missense_Mutation p.R403W 0.17 deleterious(0) probably_damaging(0.973) TCGA-F4-6856-01 19 57868556 57868556 T A ZNF304 Missense_Mutation p.V440D 0.11 deleterious(0) probably_damaging(0.988) TCGA-F4-6856-01 19 58016085 58016085 C T ZNF773 Missense_Mutation p.L32F 0.28 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 19 58049968 58049968 T C ZNF549 Silent p.N532N 0.16 TCGA-F4-6856-01 19 58281219 58281219 A G ZNF586 Silent p.A3A 0.40 TCGA-F4-6856-01 19 58319237 58319237 C T ZNF552 3'UTR 0.36 TCGA-F4-6856-01 19 59074631 59074631 G T MZF1 Missense_Mutation p.P338H 0.36 tolerated(0.21) benign(0.417) TCGA-F4-6856-01 19 6468380 6468380 C - DENND1C Frame_Shift_Del p.S553Lfs*8 0.16 TCGA-F4-6856-01 19 6468936 6468936 C - DENND1C Frame_Shift_Del p.G479Afs*3 0.33 TCGA-F4-6856-01 19 6479906 6479906 G - DENND1C Frame_Shift_Del p.I31Sfs*81 0.14 TCGA-F4-6856-01 19 6751177 6751177 C T TRIP10 Silent p.G531G 0.27 TCGA-F4-6856-01 19 805177 805177 C T PTBP1 Silent p.A294A 0.29 TCGA-F4-6856-01 19 8564622 8564622 C T PRAM1 Missense_Mutation p.A24T 0.11 deleterious(0.02) benign(0.183) TCGA-F4-6856-01 19 8620542 8620542 C T MYO1F Splice_Site p.X47_splice 0.34 TCGA-F4-6856-01 19 9271392 9271392 G - ZNF317 Frame_Shift_Del p.E359Rfs*51 0.30 TCGA-F4-6856-01 19 9453544 9453544 G A ZNF559 Missense_Mutation p.A473T 0.33 tolerated(0.06) benign(0.106) TCGA-F4-6856-01 1 101705553 101705553 G A S1PR1 Missense_Mutation p.G338D 0.14 tolerated(0.1) benign(0.002) TCGA-F4-6856-01 1 10703320 10703320 C T CASZ1 Missense_Mutation p.G1306D 0.29 tolerated(0.05) probably_damaging(0.995) TCGA-F4-6856-01 1 109191554 109191554 A G HENMT1 Silent p.V272V 0.12 TCGA-F4-6856-01 1 110086520 110086520 G - GPR61 Frame_Shift_Del p.G294Dfs*19 0.25 TCGA-F4-6856-01 1 110257581 110257581 C T GSTM5 Missense_Mutation p.P125S 0.12 tolerated(0.08) benign(0.043) TCGA-F4-6856-01 1 110257973 110257973 G A GSTM5 Intron 0.28 TCGA-F4-6856-01 1 110299639 110299639 C T EPS8L3 Missense_Mutation p.R374Q 0.20 tolerated(0.28) benign(0.007) TCGA-F4-6856-01 1 110883798 110883798 C - RBM15 Frame_Shift_Del p.P592Qfs*23 0.16 TCGA-F4-6856-01 1 113161476 113161476 C - ST7L Intron 0.15 TCGA-F4-6856-01 1 114945410 114945410 G A TRIM33 Missense_Mutation p.A955V 0.21 tolerated(0.48) benign(0.002) TCGA-F4-6856-01 1 116380916 116380916 G A NHLH2 Silent p.G26G 0.41 TCGA-F4-6856-01 1 117146282 117146282 G A IGSF3 Missense_Mutation p.R550C 0.32 deleterious(0) probably_damaging(0.972) TCGA-F4-6856-01 1 11735220 11735220 C A MAD2L2 Missense_Mutation p.W171C 0.28 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 1 117504030 117504030 C T PTGFRN Missense_Mutation p.T460I 0.25 tolerated(0.08) benign(0.006) TCGA-F4-6856-01 1 118506442 118506442 G A SPAG17 Missense_Mutation p.R2218C 0.24 deleterious(0.01) benign(0.038) TCGA-F4-6856-01 1 11983401 11983401 C T KIAA2013 Silent p.T393T 0.27 TCGA-F4-6856-01 1 120438116 120438116 T - ADAM30 Frame_Shift_Del p.S282Vfs*3 0.21 TCGA-F4-6856-01 1 12337589 12337589 G A VPS13D Missense_Mutation p.R1315Q 0.22 benign(0) TCGA-F4-6856-01 1 12779564 12779564 G A AADACL3 Missense_Mutation p.D29N 0.15 tolerated(0.36) benign(0.017) TCGA-F4-6856-01 1 12884969 12884969 C T PRAMEF11 Missense_Mutation p.G381D 0.34 tolerated(1) benign(0.003) TCGA-F4-6856-01 1 12980001 12980001 G A PRAMEF7 Missense_Mutation p.R398H 0.25 possibly_damaging(0.813) TCGA-F4-6856-01 1 150933305 150933305 C T SETDB1 Missense_Mutation p.R923W 0.31 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 1 151158394 151158394 C T VPS72 Silent p.Q50Q 0.35 TCGA-F4-6856-01 1 151502491 151502491 G A CGN Missense_Mutation p.R738H 0.34 deleterious(0.05) benign(0.011) TCGA-F4-6856-01 1 152732439 152732439 A G KPRP Silent p.S125S 0.31 TCGA-F4-6856-01 1 152976307 152976307 C T SPRR3 3'UTR 0.20 TCGA-F4-6856-01 1 153746140 153746140 T C INTS3 3'UTR 0.27 TCGA-F4-6856-01 1 153963624 153963626 GAG - RPS27 In_Frame_Del p.E15del 0.26 TCGA-F4-6856-01 1 154144813 154144813 C T TPM3 Intron 0.33 TCGA-F4-6856-01 1 154530752 154530752 G - UBE2Q1 Frame_Shift_Del p.P93Hfs*46 0.19 TCGA-F4-6856-01 1 154988698 154988700 ACG - ZBTB7B In_Frame_Del p.D421del 0.28 TCGA-F4-6856-01 1 155317646 155317646 C T ASH1L Missense_Mutation p.R2535Q 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F4-6856-01 1 157771741 157771741 C - FCRL1 Frame_Shift_Del p.A284Pfs*7 0.27 TCGA-F4-6856-01 1 158064539 158064539 G A KIRREL Missense_Mutation p.G635S 0.28 tolerated(0.78) benign(0.014) TCGA-F4-6856-01 1 158263409 158263409 T A CD1C 3'UTR 0.28 TCGA-F4-6856-01 1 158323776 158323776 T C CD1E 5'UTR 0.26 TCGA-F4-6856-01 1 158517187 158517187 G C OR6Y1 Missense_Mutation p.Q237E 0.31 tolerated(0.29) possibly_damaging(0.547) TCGA-F4-6856-01 1 158670072 158670072 G A OR6K2 Missense_Mutation p.A124V 0.15 deleterious(0) probably_damaging(0.991) TCGA-F4-6856-01 1 158687568 158687568 A G OR6K3 Missense_Mutation p.I113T 0.12 tolerated(0.13) benign(0.005) TCGA-F4-6856-01 1 158724972 158724972 G A OR6K6 Missense_Mutation p.A123T 0.20 tolerated(0.69) benign(0.004) TCGA-F4-6856-01 1 160062896 160062896 C T IGSF8 Missense_Mutation p.R377Q 0.30 deleterious(0.04) probably_damaging(0.99) TCGA-F4-6856-01 1 160769650 160769650 G A LY9 Missense_Mutation p.V78I 0.26 tolerated(0.64) benign(0.292) TCGA-F4-6856-01 1 160851925 160851925 C - ITLN1 Frame_Shift_Del p.G76Vfs*92 0.20 TCGA-F4-6856-01 1 161069917 161069917 G A KLHDC9 Missense_Mutation p.R318H 0.18 tolerated(0.1) probably_damaging(0.991) TCGA-F4-6856-01 1 161168353 161168353 G A ADAMTS4 Missense_Mutation p.P22L 0.38 tolerated_low_confidence(0.75) benign(0.003) TCGA-F4-6856-01 1 161967908 161967909 - T OLFML2B Frame_Shift_Ins p.T394Nfs*93 0.23 TCGA-F4-6856-01 1 16356526 16356526 G A CLCNKA Missense_Mutation p.G455E 0.32 tolerated(0.24) benign(0.079) TCGA-F4-6856-01 1 16385040 16385040 C T FAM131C Silent p.R245R 0.23 TCGA-F4-6856-01 1 167097529 167097529 C - DUSP27 Frame_Shift_Del p.P1055Qfs*39 0.24 TCGA-F4-6856-01 1 168211833 168211833 C T SFT2D2 3'UTR 0.33 TCGA-F4-6856-01 1 16953655 16953655 G A CROCCP2 3'Flank 0.11 TCGA-F4-6856-01 1 169697236 169697236 G - SELE Frame_Shift_Del p.T415Qfs*14 0.28 TCGA-F4-6856-01 1 177927332 177927333 - G SEC16B Frame_Shift_Ins p.S434Qfs*14 0.29 TCGA-F4-6856-01 1 179620128 179620128 G A TDRD5 Missense_Mutation p.E643K 0.34 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 1 180904389 180904389 G A KIAA1614 Silent p.S448S 0.10 TCGA-F4-6856-01 1 182354926 182354926 G A GLUL Missense_Mutation p.A191V 0.37 tolerated(0.11) benign(0.054) TCGA-F4-6856-01 1 182499958 182499958 C T RGSL1 Silent p.H759H 0.25 TCGA-F4-6856-01 1 182845216 182845216 A G DHX9 Missense_Mutation p.Y616C 0.24 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 1 182869164 182869166 TTA - SHCBP1L In_Frame_Del p.N638del 0.28 TCGA-F4-6856-01 1 183907977 183907977 C T COLGALT2 Missense_Mutation p.R600H 0.28 tolerated(0.37) benign(0) TCGA-F4-6856-01 1 184688314 184688314 T - EDEM3 Frame_Shift_Del p.K381Nfs*22 0.24 TCGA-F4-6856-01 1 186276726 186276726 G A PRG4 Silent p.T625T 0.35 TCGA-F4-6856-01 1 18703404 18703404 C T IGSF21 Silent p.A404A 0.38 TCGA-F4-6856-01 1 18809629 18809629 C T KLHDC7A Silent p.C718C 0.23 TCGA-F4-6856-01 1 19236843 19236843 C T IFFO2 Missense_Mutation p.A481T 0.36 tolerated(0.15) benign(0.439) TCGA-F4-6856-01 1 19423121 19423123 CTT - UBR4 In_Frame_Del p.E4471del 0.25 TCGA-F4-6856-01 1 19465579 19465579 C T UBR4 Missense_Mutation p.S2910N 0.47 benign(0.009) TCGA-F4-6856-01 1 19557875 19557875 A - EMC1 Frame_Shift_Del p.F608Lfs*7 0.24 TCGA-F4-6856-01 1 19683229 19683229 C T CAPZB Missense_Mutation p.R163H 0.35 deleterious(0) possibly_damaging(0.764) TCGA-F4-6856-01 1 196920136 196920136 T C CFHR2 Silent p.T136T 0.09 TCGA-F4-6856-01 1 196920158 196920158 A G CFHR2 Missense_Mutation p.I144V 0.11 tolerated(0.52) benign(0.004) TCGA-F4-6856-01 1 197053335 197053335 T - ASPM 3'UTR 0.32 TCGA-F4-6856-01 1 197070523 197070524 - T ASPM Frame_Shift_Ins p.Q2620Tfs*17 0.16 TCGA-F4-6856-01 1 197889132 197889132 G A LHX9 Missense_Mutation p.A69T 0.35 tolerated(0.15) benign(0.006) TCGA-F4-6856-01 1 198717301 198717301 A - PTPRC Frame_Shift_Del p.N972Tfs*22 0.14 TCGA-F4-6856-01 1 19992290 19992290 G - HTR6 Frame_Shift_Del p.A17Qfs*23 0.33 TCGA-F4-6856-01 1 199996970 199996970 C A NR5A2 5'UTR 0.29 TCGA-F4-6856-01 1 201197591 201197591 C T IGFN1 3'UTR 0.33 TCGA-F4-6856-01 1 201350953 201350953 G - LAD1 3'UTR 0.34 TCGA-F4-6856-01 1 203134422 203134422 G A ADORA1 Silent p.A125A 0.40 TCGA-F4-6856-01 1 203134713 203134713 G A ADORA1 Silent p.P222P 0.25 TCGA-F4-6856-01 1 203678457 203678457 G A ATP2B4 Missense_Mutation p.R529Q 0.30 tolerated(0.27) probably_damaging(0.976) TCGA-F4-6856-01 1 204226501 204226501 G A PLEKHA6 Nonsense_Mutation p.R502* 0.27 TCGA-F4-6856-01 1 205041192 205041192 G A CNTN2 Missense_Mutation p.V888M 0.33 deleterious(0) probably_damaging(0.978) TCGA-F4-6856-01 1 20517953 20517953 C T UBXN10 3'UTR 0.13 TCGA-F4-6856-01 1 207073697 207073697 G A IL24 Missense_Mutation p.V101I 0.10 tolerated(0.18) benign(0.146) TCGA-F4-6856-01 1 207696973 207696973 C - CR1 Frame_Shift_Del p.T171Pfs*21 0.11 TCGA-F4-6856-01 1 21050885 21050885 G A SH2D5 Intron 0.25 TCGA-F4-6856-01 1 21299497 21299497 T - EIF4G3 Frame_Shift_Del p.T148Lfs*2 0.28 TCGA-F4-6856-01 1 214557413 214557413 C T PTPN14 Silent p.P595P 0.34 TCGA-F4-6856-01 1 214788296 214788297 CA - CENPF Frame_Shift_Del p.Q96Sfs*23 0.24 TCGA-F4-6856-01 1 22205509 22205509 G T HSPG2 Missense_Mutation p.P817T 0.39 probably_damaging(1) TCGA-F4-6856-01 1 224444748 224444748 C A NVL Intron 0.29 TCGA-F4-6856-01 1 224444833 224444833 A - NVL Intron 0.22 TCGA-F4-6856-01 1 224517784 224517784 G A NVL Nonsense_Mutation p.R16* 0.23 TCGA-F4-6856-01 1 225190620 225190620 C T DNAH14 Silent p.C322C 0.27 TCGA-F4-6856-01 1 225590888 225590888 A - LBR 3'UTR 0.58 TCGA-F4-6856-01 1 226026459 226026460 TT - EPHX1 Frame_Shift_Del p.F157Lfs*2 0.18 TCGA-F4-6856-01 1 227182042 227182042 G - CDC42BPA Frame_Shift_Del p.P1696Qfs*56 0.09 TCGA-F4-6856-01 1 227504829 227504829 C T CDC42BPA Missense_Mutation p.A19T 0.29 tolerated(0.71) benign(0.003) TCGA-F4-6856-01 1 227935789 227935789 C T SNAP47 Missense_Mutation p.R163W 0.47 deleterious(0) probably_damaging(0.976) TCGA-F4-6856-01 1 228559457 228559457 C - OBSCN Frame_Shift_Del p.P7951Lfs*78 0.09 TCGA-F4-6856-01 1 22902829 22902829 C T EPHA8 Silent p.G93G 0.35 TCGA-F4-6856-01 1 23111440 23111440 G A EPHB2 Missense_Mutation p.A228T 0.21 tolerated(0.53) benign(0.015) TCGA-F4-6856-01 1 233515416 233515416 A G MLK4 Silent p.S888S 0.20 TCGA-F4-6856-01 1 234041351 234041351 T C SLC35F3 Silent p.L44L 0.38 TCGA-F4-6856-01 1 234367316 234367316 G A SLC35F3 Missense_Mutation p.C146Y 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-F4-6856-01 1 234445006 234445006 C T SLC35F3 Silent p.N256N 0.11 TCGA-F4-6856-01 1 236711493 236711493 T A LGALS8 3'UTR 0.15 TCGA-F4-6856-01 1 23720476 23720476 G A TCEA3 Missense_Mutation p.R239C 0.10 deleterious(0) probably_damaging(0.987) TCGA-F4-6856-01 1 240255783 240255783 C T FMN2 Missense_Mutation p.A125V 0.10 unknown(0) TCGA-F4-6856-01 1 2411241 2411241 G A PLCH2 Missense_Mutation p.G87S 0.15 tolerated(0.13) benign(0.324) TCGA-F4-6856-01 1 241936144 241936144 C T WDR64 Missense_Mutation p.H771Y 0.29 tolerated(0.06) benign(0.001) TCGA-F4-6856-01 1 247615147 247615147 G A OR2B11 Silent p.N46N 0.35 TCGA-F4-6856-01 1 247769028 247769028 C A OR2G3 Silent p.I47I 0.30 TCGA-F4-6856-01 1 2543628 2543628 C T MMEL1 Missense_Mutation p.R57H 0.32 tolerated(0.13) benign(0.001) TCGA-F4-6856-01 1 26611985 26611985 C T UBXN11 Silent p.Q274Q 0.21 TCGA-F4-6856-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.20 TCGA-F4-6856-01 1 27660712 27660712 G A TMEM222 Missense_Mutation p.S160N 0.11 deleterious(0.05) possibly_damaging(0.566) TCGA-F4-6856-01 1 33402393 33402393 G A RNF19B 3'UTR 0.24 TCGA-F4-6856-01 1 33960176 33960176 A G ZSCAN20 Silent p.G744G 0.18 TCGA-F4-6856-01 1 3415052 3415052 G - MEGF6 Frame_Shift_Del p.R1079Gfs*195 0.31 TCGA-F4-6856-01 1 34643639 34643639 G A C1orf94 Nonsense_Mutation p.W83* 0.12 TCGA-F4-6856-01 1 35250451 35250451 G A GJB3 Missense_Mutation p.V30I 0.37 tolerated(1) possibly_damaging(0.873) TCGA-F4-6856-01 1 3551635 3551635 G A WRAP73 Missense_Mutation p.R248C 0.26 deleterious(0) probably_damaging(0.997) TCGA-F4-6856-01 1 35649863 35649863 A - SFPQ 3'UTR 0.39 TCGA-F4-6856-01 1 36644555 36644555 G A MAP7D1 Missense_Mutation p.A687T 0.32 unknown(0) TCGA-F4-6856-01 1 3697651 3697651 G A LRRC47 3'UTR 0.38 TCGA-F4-6856-01 1 37271713 37271713 G A GRIK3 Missense_Mutation p.T769M 0.30 tolerated(0.18) probably_damaging(1) TCGA-F4-6856-01 1 3745862 3745862 C T CEP104 Missense_Mutation p.A707T 0.20 tolerated(0.06) benign(0.069) TCGA-F4-6856-01 1 40704624 40704624 T - RLF Frame_Shift_Del p.Y1419Ifs*6 0.24 TCGA-F4-6856-01 1 40928628 40928628 G A ZFP69B Silent p.P324P 0.35 TCGA-F4-6856-01 1 42647655 42647655 T G FOXJ3 Silent p.S562S 0.29 TCGA-F4-6856-01 1 46499806 46499806 C T MAST2 Missense_Mutation p.R1246C 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F4-6856-01 1 47283665 47283665 C T CYP4B1 Silent p.A412A 0.24 TCGA-F4-6856-01 1 52880460 52880460 G A PRPF38A Missense_Mutation p.R259Q 0.24 tolerated(0.06) unknown(0) TCGA-F4-6856-01 1 53556345 53556345 C T SLC1A7 Missense_Mutation p.A389T 0.37 deleterious(0.01) benign(0.323) TCGA-F4-6856-01 1 53715064 53715064 G A LRP8 Silent p.V947V 0.21 TCGA-F4-6856-01 1 56990067 56990067 G A PPAP2B Missense_Mutation p.R153C 0.08 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 1 6188947 6188947 G A CHD5 Silent p.D1190D 0.33 TCGA-F4-6856-01 1 66458797 66458797 C T PDE4B Intron 0.40 TCGA-F4-6856-01 1 66999887 66999887 C T SGIP1 5'Flank 0.18 TCGA-F4-6856-01 1 67161035 67161035 A G SGIP1 Intron 0.29 TCGA-F4-6856-01 1 70712532 70712532 C T SRSF11 Missense_Mutation p.R322C 0.09 tolerated(0.07) unknown(0) TCGA-F4-6856-01 1 76397998 76397998 A T ASB17 5'UTR 0.13 TCGA-F4-6856-01 1 84955375 84955376 - A RPF1 Frame_Shift_Ins p.I144Dfs*8 0.22 TCGA-F4-6856-01 1 92327108 92327108 C T TGFBR3 5'UTR 0.29 TCGA-F4-6856-01 1 92642631 92642631 A - KIAA1107 Frame_Shift_Del p.N191Mfs*9 0.21 TCGA-F4-6856-01 1 94473206 94473206 T C ABCA4 Missense_Mutation p.T1997A 0.24 tolerated(0.14) benign(0.314) TCGA-F4-6856-01 1 95357932 95357932 T - SLC44A3 Frame_Shift_Del p.F574Lfs*4 0.22 TCGA-F4-6856-01 1 9657090 9657090 C T TMEM201 Silent p.A136A 0.25 TCGA-F4-6856-01 1 99772185 99772185 G A LPPR4 Silent p.P637P 0.26 TCGA-F4-6856-01 20 13695795 13695795 C T ESF1 Missense_Mutation p.R761Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 20 13763170 13763170 G C ESF1 Missense_Mutation p.T206R 0.06 tolerated_low_confidence(0.4) benign(0.368) TCGA-F4-6856-01 20 1617135 1617135 G - SIRPG Frame_Shift_Del p.V150Wfs*15 0.22 TCGA-F4-6856-01 20 18163864 18163864 G A CSRP2BP Missense_Mutation p.A636T 0.36 deleterious(0.05) benign(0.217) TCGA-F4-6856-01 20 18393346 18393346 C A DZANK1 Missense_Mutation p.R459M 0.35 deleterious(0.05) probably_damaging(0.93) TCGA-F4-6856-01 20 18491484 18491484 C T SEC23B Missense_Mutation p.A2V 0.24 deleterious(0.04) benign(0.273) TCGA-F4-6856-01 20 1896065 1896065 T C SIRPA Missense_Mutation p.F134L 0.07 tolerated(0.35) benign(0.003) TCGA-F4-6856-01 20 19664933 19664933 C - SLC24A3 Frame_Shift_Del p.K341Rfs*11 0.25 TCGA-F4-6856-01 20 20051550 20051550 G A C20orf26 Missense_Mutation p.A66T 0.10 deleterious(0) probably_damaging(0.988) TCGA-F4-6856-01 20 20180472 20180472 C T C20orf26 Missense_Mutation p.P620S 0.29 deleterious(0.03) possibly_damaging(0.61) TCGA-F4-6856-01 20 23966824 23966824 G A GGTLC1 Missense_Mutation p.R65C 0.30 tolerated(0.13) benign(0.032) TCGA-F4-6856-01 20 2463788 2463788 C T ZNF343 3'UTR 0.31 TCGA-F4-6856-01 20 24646111 24646111 G A SYNDIG1 Missense_Mutation p.A250T 0.32 deleterious(0.01) possibly_damaging(0.7) TCGA-F4-6856-01 20 3052346 3052346 G A OXT Silent p.A15A 0.25 TCGA-F4-6856-01 20 31035589 31035589 G A C20orf112 Missense_Mutation p.A374V 0.15 tolerated(0.14) possibly_damaging(0.561) TCGA-F4-6856-01 20 31607452 31607452 G A BPIFB2 Missense_Mutation p.A326T 0.27 tolerated(0.24) possibly_damaging(0.622) TCGA-F4-6856-01 20 31996328 31996328 G C SNTA1 Silent p.L501L 0.24 TCGA-F4-6856-01 20 35240511 35240511 C T C20orf24 Missense_Mutation p.A106V 0.28 tolerated_low_confidence(0.51) benign(0.014) TCGA-F4-6856-01 20 35288779 35288779 G A NDRG3 Silent p.C273C 0.29 TCGA-F4-6856-01 20 36560193 36560193 G - VSTM2L Frame_Shift_Del p.A94Pfs*5 0.48 TCGA-F4-6856-01 20 3687290 3687290 A C SIGLEC1 Missense_Mutation p.L38R 0.32 deleterious(0) possibly_damaging(0.797) TCGA-F4-6856-01 20 39792456 39792458 CTC - PLCG1 In_Frame_Del p.S334del 0.31 TCGA-F4-6856-01 20 40714431 40714431 G A PTPRT Silent p.F1303F 0.32 TCGA-F4-6856-01 20 43142613 43142613 C T SERINC3 Silent p.T36T 0.32 TCGA-F4-6856-01 20 43567371 43567371 G A PABPC1L Silent p.A611A 0.45 TCGA-F4-6856-01 20 44685053 44685053 C T SLC12A5 Missense_Mutation p.P1010L 0.33 tolerated(0.26) benign(0) TCGA-F4-6856-01 20 45194970 45194970 G - SLC13A3 Frame_Shift_Del p.A465Pfs*38 0.25 TCGA-F4-6856-01 20 46264348 46264348 C - NCOA3 Frame_Shift_Del p.P467Hfs*15 0.16 TCGA-F4-6856-01 20 49621154 49621154 C T KCNG1 Missense_Mutation p.A322T 0.27 tolerated(0.26) possibly_damaging(0.597) TCGA-F4-6856-01 20 50139887 50139887 G A NFATC2 Missense_Mutation p.A298V 0.39 tolerated(0.5) benign(0.002) TCGA-F4-6856-01 20 50235300 50235300 G A ATP9A Nonsense_Mutation p.Q751* 0.28 TCGA-F4-6856-01 20 54974130 54974130 T - CSTF1 Frame_Shift_Del p.F252Lfs*27 0.22 TCGA-F4-6856-01 20 55953201 55953201 C T RAE1 3'UTR 0.29 TCGA-F4-6856-01 20 56188124 56188125 - C ZBP1 Intron 0.28 TCGA-F4-6856-01 20 56728624 56728624 G A C20orf85 Silent p.S31S 0.27 TCGA-F4-6856-01 20 57576672 57576672 G A CTSZ Missense_Mutation p.A112V 0.40 tolerated(0.12) benign(0.029) TCGA-F4-6856-01 20 57767299 57767299 G A ZNF831 Missense_Mutation p.A409T 0.47 tolerated(0.08) benign(0.091) TCGA-F4-6856-01 20 60884434 60884434 C A LAMA5 Missense_Mutation p.E3682D 0.32 benign(0.356) TCGA-F4-6856-01 20 60888722 60888722 A G LAMA5 Missense_Mutation p.Y2881H 0.27 benign(0.365) TCGA-F4-6856-01 20 61950488 61950488 G T COL20A1 Missense_Mutation p.E914D 0.23 deleterious(0) probably_damaging(0.915) TCGA-F4-6856-01 20 62039877 62039877 G A KCNQ2 Silent p.I592I 0.30 TCGA-F4-6856-01 20 62178624 62178624 G A SRMS Missense_Mutation p.R65W 0.20 deleterious(0.03) benign(0.139) TCGA-F4-6856-01 20 62575923 62575923 G A UCKL1 Silent p.R273R 0.24 TCGA-F4-6856-01 20 62844912 62844912 G A MYT1 Missense_Mutation p.A515T 0.30 probably_damaging(0.999) TCGA-F4-6856-01 20 853632 853632 G A ANGPT4 Missense_Mutation p.R495C 0.30 deleterious(0.02) probably_damaging(1) TCGA-F4-6856-01 20 8608996 8608996 G A PLCB1 Missense_Mutation p.R101H 0.15 deleterious(0) probably_damaging(0.917) TCGA-F4-6856-01 21 34107142 34107142 T G PAXBP1 3'UTR 0.22 TCGA-F4-6856-01 21 35279667 35279667 G T AP000304.12 Missense_Mutation p.P89H 0.11 deleterious(0.05) probably_damaging(0.961) TCGA-F4-6856-01 21 38098511 38098511 C T SIM2 Missense_Mutation p.A212V 0.46 tolerated(0.05) possibly_damaging(0.841) TCGA-F4-6856-01 21 41034678 41034678 C T B3GALT5 3'UTR 0.24 TCGA-F4-6856-01 21 43411860 43411860 C T ZBTB21 Missense_Mutation p.R782H 0.29 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 21 45391348 45391348 G A AGPAT3 Silent p.K248K 0.37 TCGA-F4-6856-01 21 45743688 45743688 C T PFKL Missense_Mutation p.R513C 0.41 deleterious(0) benign(0.024) TCGA-F4-6856-01 21 46330269 46330269 G A ITGB2 Missense_Mutation p.T26M 0.44 tolerated(0.08) possibly_damaging(0.844) TCGA-F4-6856-01 21 46689909 46689909 C - POFUT2 Frame_Shift_Del p.G286Afs*8 0.17 TCGA-F4-6856-01 21 46841360 46841360 G T COL18A1-AS1 RNA 0.36 TCGA-F4-6856-01 22 18218221 18218221 G T BID 3'UTR 0.23 TCGA-F4-6856-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.20 TCGA-F4-6856-01 22 18900797 18900797 G A PRODH Missense_Mutation p.A565V 0.18 deleterious(0.02) possibly_damaging(0.767) TCGA-F4-6856-01 22 19420067 19420067 C T MRPL40 5'UTR 0.22 TCGA-F4-6856-01 22 20112860 20112860 G A RANBP1 Missense_Mutation p.A114T 0.27 tolerated(0.08) benign(0.043) TCGA-F4-6856-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.30 TCGA-F4-6856-01 22 21322111 21322111 C T AIFM3 5'UTR 0.44 TCGA-F4-6856-01 22 21900406 21900406 G A RIMBP3C Silent p.G1620G 0.21 TCGA-F4-6856-01 22 23524119 23524119 C T BCR Silent p.C324C 0.46 TCGA-F4-6856-01 22 26294300 26294300 C T MYO18B Silent p.D1565D 0.29 TCGA-F4-6856-01 22 26771566 26771566 G A SEZ6L Silent p.S951S 0.32 TCGA-F4-6856-01 22 29927830 29927830 C T THOC5 Silent p.G279G 0.23 TCGA-F4-6856-01 22 33402661 33402662 - G SYN3 5'UTR 0.23 TCGA-F4-6856-01 22 36682850 36682850 C T MYH9 Missense_Mutation p.A1659T 0.32 benign(0.008) TCGA-F4-6856-01 22 36722641 36722641 G A MYH9 Missense_Mutation p.A195V 0.28 benign(0.316) TCGA-F4-6856-01 22 37456897 37456899 AGG - KCTD17 In_Frame_Del p.E226del 0.24 TCGA-F4-6856-01 22 37499389 37499389 C A TMPRSS6 Missense_Mutation p.E32D 0.20 deleterious(0.02) probably_damaging(0.97) TCGA-F4-6856-01 22 37872967 37872967 C T MFNG Missense_Mutation p.R205H 0.18 deleterious(0.03) possibly_damaging(0.828) TCGA-F4-6856-01 22 39069453 39069453 C T CBY1 3'UTR 0.38 TCGA-F4-6856-01 22 39262729 39262729 G - CBX6 Frame_Shift_Del p.L242Wfs*2 0.43 TCGA-F4-6856-01 22 40231887 40231887 C A ENTHD1 Missense_Mutation p.Q223H 0.24 deleterious(0) probably_damaging(0.944) TCGA-F4-6856-01 22 40760897 40760897 A C ADSL Missense_Mutation p.K402T 0.36 deleterious(0.02) benign(0.196) TCGA-F4-6856-01 22 41231580 41231580 G A ST13 Missense_Mutation p.R188W 0.23 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 22 41634880 41634880 G A CHADL Missense_Mutation p.R66W 0.34 deleterious(0.03) probably_damaging(0.995) TCGA-F4-6856-01 22 42956245 42956246 AA - SERHL2 Frame_Shift_Del p.G198Nfs*24 0.34 TCGA-F4-6856-01 22 44064847 44064847 G A EFCAB6 Silent p.G573G 0.28 TCGA-F4-6856-01 22 45128230 45128230 C T PRR5 Missense_Mutation p.R195C 0.39 deleterious(0) benign(0.029) TCGA-F4-6856-01 22 46319052 46319052 C T WNT7B Missense_Mutation p.R245H 0.33 tolerated(0.07) probably_damaging(0.998) TCGA-F4-6856-01 22 46615783 46615784 AT - PPARA Frame_Shift_Del p.I195Rfs*4 0.22 TCGA-F4-6856-01 22 46832142 46832142 C T CELSR1 Missense_Mutation p.R1484H 0.33 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 22 50181256 50181256 C T BRD1 Intron 0.25 TCGA-F4-6856-01 22 50283110 50283111 - T ZBED4 3'UTR 0.30 TCGA-F4-6856-01 22 50454985 50454985 C T TTLL8 Missense_Mutation p.G753D 0.21 deleterious_low_confidence(0.01) benign(0.043) TCGA-F4-6856-01 22 50921040 50921041 - C ADM2 Frame_Shift_Ins p.A54Rfs*123 0.18 TCGA-F4-6856-01 22 50962170 50962170 T C SCO2 Missense_Mutation p.H224R 0.10 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 22 50962258 50962258 T C SCO2 Missense_Mutation p.T195A 0.09 tolerated(0.8) benign(0.001) TCGA-F4-6856-01 2 102957160 102957160 C T IL1RL1 Missense_Mutation p.A161V 0.34 tolerated(0.35) benign(0.008) TCGA-F4-6856-01 2 10927471 10927471 G A PDIA6 Missense_Mutation p.R365C 0.07 deleterious(0) possibly_damaging(0.886) TCGA-F4-6856-01 2 111753553 111753553 G A ACOXL Missense_Mutation p.R418Q 0.31 tolerated(0.3) possibly_damaging(0.701) TCGA-F4-6856-01 2 116593799 116593799 G A DPP10 Missense_Mutation p.V677M 0.21 deleterious(0) benign(0.065) TCGA-F4-6856-01 2 118588247 118588247 A G DDX18 Missense_Mutation p.I654V 0.31 tolerated(0.1) probably_damaging(0.946) TCGA-F4-6856-01 2 120003155 120003155 C - STEAP3 Frame_Shift_Del p.V41Wfs*44 0.32 TCGA-F4-6856-01 2 127453576 127453576 G A GYPC Missense_Mutation p.R82H 0.28 tolerated(0.51) benign(0.004) TCGA-F4-6856-01 2 128735652 128735652 C T SAP130 Missense_Mutation p.R683Q 0.28 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-F4-6856-01 2 131116821 131116821 T C PTPN18 Missense_Mutation p.V73A 0.28 deleterious(0.03) possibly_damaging(0.466) TCGA-F4-6856-01 2 132021329 132021329 G A POTEE Silent p.L767L 0.24 TCGA-F4-6856-01 2 132277949 132277949 G A AC093838.4 RNA 0.29 TCGA-F4-6856-01 2 133489330 133489330 A G NCKAP5 Missense_Mutation p.L1808P 0.38 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 2 135621177 135621177 G A ACMSD Silent p.A154A 0.12 TCGA-F4-6856-01 2 136566675 136566675 G - LCT Frame_Shift_Del p.P1081Qfs*3 0.20 TCGA-F4-6856-01 2 14775012 14775012 C - FAM84A 3'UTR 0.26 TCGA-F4-6856-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.44 TCGA-F4-6856-01 2 162696418 162696418 G A SLC4A10 Missense_Mutation p.E133K 0.40 deleterious(0) benign(0.11) TCGA-F4-6856-01 2 163291813 163291813 C T KCNH7 Missense_Mutation p.A617T 0.20 deleterious(0) probably_damaging(0.992) TCGA-F4-6856-01 2 1651971 1651971 T - PXDN Frame_Shift_Del p.N1194Tfs*8 0.20 TCGA-F4-6856-01 2 166606309 166606309 A G GALNT3 Silent p.C574C 0.29 TCGA-F4-6856-01 2 171371472 171371472 G A MYO3B Missense_Mutation p.A1138T 0.31 tolerated_low_confidence(0.69) benign(0) TCGA-F4-6856-01 2 171573732 171573732 C T SP5 Missense_Mutation p.R339C 0.36 deleterious(0) possibly_damaging(0.898) TCGA-F4-6856-01 2 177036774 177036774 C T HOXD3 Silent p.Y357Y 0.43 TCGA-F4-6856-01 2 177195343 177195343 C T MTX2 Missense_Mutation p.A192V 0.28 deleterious(0.01) possibly_damaging(0.728) TCGA-F4-6856-01 2 178705080 178705080 G A PDE11A Silent p.Y466Y 0.10 TCGA-F4-6856-01 2 179469928 179469928 G A TTN Silent p.G17992G 0.23 TCGA-F4-6856-01 2 179472775 179472775 T G TTN Missense_Mutation p.D17580A 0.29 TCGA-F4-6856-01 2 179480071 179480071 T C TTN Missense_Mutation p.K16201E 0.10 TCGA-F4-6856-01 2 179528601 179528601 G A TTN Silent p.R12131R 0.27 TCGA-F4-6856-01 2 179666956 179666956 G A TTN Silent p.P68P 0.29 TCGA-F4-6856-01 2 183848087 183848087 C T NCKAP1 Missense_Mutation p.R349H 0.18 deleterious(0) probably_damaging(0.914) TCGA-F4-6856-01 2 187533542 187533542 G A ITGAV Nonsense_Mutation p.W829* 0.32 TCGA-F4-6856-01 2 187626805 187626805 G A FAM171B Missense_Mutation p.R579Q 0.31 tolerated(0.12) probably_damaging(0.962) TCGA-F4-6856-01 2 187693184 187693184 T A ZSWIM2 Missense_Mutation p.N477Y 0.11 deleterious(0.01) benign(0.438) TCGA-F4-6856-01 2 187693188 187693188 T A ZSWIM2 Missense_Mutation p.L475F 0.12 deleterious(0.03) possibly_damaging(0.802) TCGA-F4-6856-01 2 189929781 189929781 A C COL5A2 Silent p.G522G 0.26 TCGA-F4-6856-01 2 201735974 201735974 G A PPIL3 3'UTR 0.25 TCGA-F4-6856-01 2 202626049 202626049 T C ALS2 Missense_Mutation p.Q223R 0.21 deleterious(0.03) possibly_damaging(0.756) TCGA-F4-6856-01 2 202626138 202626138 T G ALS2 Missense_Mutation p.Q193H 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-F4-6856-01 2 203168193 203168193 A G NOP58 3'UTR 0.31 TCGA-F4-6856-01 2 20482977 20482979 GCT - PUM2 In_Frame_Del p.A484del 0.30 TCGA-F4-6856-01 2 206050507 206050507 C T PARD3B Silent p.D586D 0.26 TCGA-F4-6856-01 2 207169841 207169841 G A ZDBF2 Missense_Mutation p.D197N 0.31 tolerated(0.16) benign(0.005) TCGA-F4-6856-01 2 208576668 208576668 G A CCNYL1 Silent p.K16K 0.21 TCGA-F4-6856-01 2 208633222 208633222 T C FZD5 Missense_Mutation p.D81G 0.17 deleterious(0.01) probably_damaging(1) TCGA-F4-6856-01 2 209191061 209191061 G A PIKFYVE Missense_Mutation p.A1176T 0.29 tolerated(0.46) benign(0.001) TCGA-F4-6856-01 2 210570439 210570439 C T MAP2 Missense_Mutation p.R1574W 0.22 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 2 219508128 219508128 C T ZNF142 Silent p.R1037R 0.20 TCGA-F4-6856-01 2 219736423 219736423 G A WNT6 Missense_Mutation p.G173D 0.10 tolerated(0.08) benign(0.175) TCGA-F4-6856-01 2 219855055 219855055 G A CRYBA2 Silent p.S171S 0.10 TCGA-F4-6856-01 2 219922285 219922285 G A IHH Silent p.R149R 0.25 TCGA-F4-6856-01 2 220074543 220074543 T C ABCB6 3'UTR 0.28 TCGA-F4-6856-01 2 220115735 220115735 C T TUBA4A Missense_Mutation p.R229H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.737) TCGA-F4-6856-01 2 220168478 220168478 G - PTPRN Frame_Shift_Del p.P119Qfs*81 0.24 TCGA-F4-6856-01 2 220405271 220405271 G A CHPF Missense_Mutation p.R388C 0.36 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 2 220478592 220478592 C T STK11IP Missense_Mutation p.R897C 0.40 deleterious(0.03) benign(0) TCGA-F4-6856-01 2 223065778 223065778 G A PAX3 3'UTR 0.28 TCGA-F4-6856-01 2 223066834 223066834 C T PAX3 Missense_Mutation p.G417R 0.35 deleterious_low_confidence(0.03) probably_damaging(0.952) TCGA-F4-6856-01 2 227953487 227953487 G - COL4A4 Frame_Shift_Del p.P502Lfs*151 0.25 TCGA-F4-6856-01 2 228881963 228881963 C T SPHKAP Missense_Mutation p.E1203K 0.30 deleterious(0.01) possibly_damaging(0.852) TCGA-F4-6856-01 2 232143143 232143143 C A ARMC9 Nonsense_Mutation p.S508* 0.11 TCGA-F4-6856-01 2 233721692 233721692 A G GIGYF2 3'UTR 0.35 TCGA-F4-6856-01 2 233899434 233899434 G T NEU2 Missense_Mutation p.Q270H 0.10 tolerated(1) benign(0) TCGA-F4-6856-01 2 234847770 234847770 G A TRPM8 Silent p.P159P 0.25 TCGA-F4-6856-01 2 238243453 238243453 G - COL6A3 Frame_Shift_Del p.G3016Vfs*19 0.27 TCGA-F4-6856-01 2 239134001 239134001 C T AC016757.3 Missense_Mutation p.A92T 0.41 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-F4-6856-01 2 241533989 241533989 C T CAPN10 Missense_Mutation p.A287V 0.32 tolerated(0.47) benign(0.005) TCGA-F4-6856-01 2 241689862 241689862 G A KIF1A Silent p.A987A 0.16 TCGA-F4-6856-01 2 241706336 241706336 G A KIF1A Silent p.S560S 0.37 TCGA-F4-6856-01 2 241727561 241727561 G A KIF1A Silent p.N90N 0.25 TCGA-F4-6856-01 2 242004357 242004357 C T SNED1 Silent p.G899G 0.34 TCGA-F4-6856-01 2 27587258 27587258 T - EIF2B4 3'Flank 0.27 TCGA-F4-6856-01 2 27600572 27600572 C T ZNF513 Missense_Mutation p.R489H 0.20 deleterious(0) possibly_damaging(0.522) TCGA-F4-6856-01 2 27930895 27930895 T A AC074091.13 Missense_Mutation p.L46F 0.09 possibly_damaging(0.765) TCGA-F4-6856-01 2 29295141 29295141 T C C2orf71 Missense_Mutation p.T663A 0.12 tolerated(0.07) benign(0.137) TCGA-F4-6856-01 2 30756073 30756073 G A LCLAT1 Missense_Mutation p.R124Q 0.24 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 2 30993272 30993272 C T CAPN13 Missense_Mutation p.R144H 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-F4-6856-01 2 32667499 32667499 C - BIRC6 Frame_Shift_Del p.R1406Dfs*3 0.26 TCGA-F4-6856-01 2 33810047 33810047 G A FAM98A Silent p.G451G 0.08 TCGA-F4-6856-01 2 48045924 48045924 T C FBXO11 Missense_Mutation p.Q667R 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-F4-6856-01 2 54483085 54483085 G A TSPYL6 Silent p.G68G 0.22 TCGA-F4-6856-01 2 5834745 5834745 C T SOX11 3'UTR 0.16 TCGA-F4-6856-01 2 61244935 61244935 C T PEX13 Missense_Mutation p.T14I 0.37 tolerated(0.12) benign(0.261) TCGA-F4-6856-01 2 65357074 65357074 A G RAB1A 5'UTR 0.33 TCGA-F4-6856-01 2 65541215 65541215 G A SPRED2 Missense_Mutation p.T226M 0.37 tolerated(0.05) probably_damaging(0.939) TCGA-F4-6856-01 2 74595917 74595917 G A DCTN1 Missense_Mutation p.R598W 0.34 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 2 75105998 75105998 G A HK2 Silent p.R405R 0.34 TCGA-F4-6856-01 2 77746239 77746239 C T LRRTM4 Nonsense_Mutation p.W252* 0.24 TCGA-F4-6856-01 2 85097471 85097471 G A TRABD2A Missense_Mutation p.R183C 0.31 deleterious(0.01) benign(0.077) TCGA-F4-6856-01 2 86697471 86697471 G A KDM3A Missense_Mutation p.R555H 0.23 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 2 88888279 88888279 G A EIF2AK3 Missense_Mutation p.H436Y 0.16 deleterious(0.01) benign(0.433) TCGA-F4-6856-01 2 9474866 9474867 - T ASAP2 Frame_Shift_Ins p.Q232Sfs*15 0.36 TCGA-F4-6856-01 2 97357320 97357320 G A FER1L5 RNA 0.28 TCGA-F4-6856-01 2 98429167 98429168 - A TMEM131 Frame_Shift_Ins p.G555Wfs*10 0.23 TCGA-F4-6856-01 2 98916674 98916674 C T VWA3B Missense_Mutation p.R1139W 0.36 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 2 99013478 99013478 G A CNGA3 Silent p.E615E 0.34 TCGA-F4-6856-01 2 99999352 99999352 A - EIF5B Frame_Shift_Del p.K748Nfs*29 0.21 TCGA-F4-6856-01 3 100972611 100972611 G A IMPG2 Missense_Mutation p.R390C 0.12 tolerated(0.17) benign(0.443) TCGA-F4-6856-01 3 10261394 10261394 C T IRAK2 Missense_Mutation p.R312C 0.28 deleterious(0) probably_damaging(0.994) TCGA-F4-6856-01 3 10417228 10417228 G - ATP2B2 Frame_Shift_Del p.V435Sfs*14 0.24 TCGA-F4-6856-01 3 10442673 10442673 G A ATP2B2 Missense_Mutation p.R249C 0.28 deleterious(0.02) probably_damaging(0.912) TCGA-F4-6856-01 3 108129461 108129461 C T MYH15 Silent p.E1508E 0.32 TCGA-F4-6856-01 3 11060368 11060368 A G SLC6A1 Missense_Mutation p.Y152C 0.24 deleterious(0.01) possibly_damaging(0.886) TCGA-F4-6856-01 3 11302367 11302367 A T HRH1 3'UTR 0.33 TCGA-F4-6856-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.16 TCGA-F4-6856-01 3 120321036 120321036 T - NDUFB4 Intron 0.08 TCGA-F4-6856-01 3 121212484 121212484 C T POLQ Missense_Mutation p.G788D 0.19 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 3 121712119 121712119 G A ILDR1 Missense_Mutation p.R493W 0.29 deleterious(0.02) benign(0.153) TCGA-F4-6856-01 3 12198907 12198907 C T TIMP4 Missense_Mutation p.R72Q 0.32 tolerated(1) benign(0.022) TCGA-F4-6856-01 3 122447243 122447243 A G PARP14 Silent p.R1735R 0.38 TCGA-F4-6856-01 3 126070928 126070928 G A KLF15 Missense_Mutation p.R280C 0.29 deleterious(0) probably_damaging(0.996) TCGA-F4-6856-01 3 126201279 126201279 C T UROC1 Missense_Mutation p.C707Y 0.29 deleterious(0.05) probably_damaging(0.917) TCGA-F4-6856-01 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.37 deleterious(0.01) benign(0.226) TCGA-F4-6856-01 3 127335776 127335776 T C MCM2 Missense_Mutation p.S530P 0.11 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 3 130290006 130290006 A G COL6A6 Missense_Mutation p.I916V 0.47 tolerated(0.09) probably_damaging(0.941) TCGA-F4-6856-01 3 133347516 133347516 G A TOPBP1 Missense_Mutation p.T861M 0.28 deleterious(0) possibly_damaging(0.677) TCGA-F4-6856-01 3 13677982 13677982 C T FBLN2 Silent p.S1084S 0.31 TCGA-F4-6856-01 3 142840652 142840652 C T CHST2 Missense_Mutation p.R332C 0.21 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 3 14724518 14724518 C G C3orf20 Missense_Mutation p.P100A 0.33 tolerated(0.45) benign(0.009) TCGA-F4-6856-01 3 151012162 151012163 - T GPR87 Frame_Shift_Ins p.I291Nfs*16 0.08 TCGA-F4-6856-01 3 152883492 152883492 C - RAP2B 3'UTR 0.10 TCGA-F4-6856-01 3 153840254 153840254 C T ARHGEF26 Missense_Mutation p.P158L 0.12 deleterious_low_confidence(0.01) benign(0.147) TCGA-F4-6856-01 3 160395950 160395950 A T ARL14 3'UTR 0.25 TCGA-F4-6856-01 3 169485553 169485553 A T ACTRT3 Nonsense_Mutation p.C262* 0.23 TCGA-F4-6856-01 3 170108170 170108170 T C SKIL Missense_Mutation p.I530T 0.08 tolerated(0.05) benign(0.019) TCGA-F4-6856-01 3 173997243 173997243 C G NLGN1 Nonsense_Mutation p.Y484* 0.36 TCGA-F4-6856-01 3 176769382 176769382 C T TBL1XR1 Missense_Mutation p.A113T 0.31 tolerated(0.51) benign(0.002) TCGA-F4-6856-01 3 178916725 178916725 C T PIK3CA Missense_Mutation p.R38C 0.26 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 3 180359822 180359822 C T CCDC39 Silent p.A611A 0.31 TCGA-F4-6856-01 3 183209684 183209685 - G KLHL6 3'UTR 0.28 TCGA-F4-6856-01 3 183390266 183390266 C T KLHL24 Silent p.S532S 0.21 TCGA-F4-6856-01 3 183756042 183756042 A T HTR3D Intron 0.23 TCGA-F4-6856-01 3 18391077 18391077 G - SATB1 Frame_Shift_Del p.P658Hfs*81 0.27 TCGA-F4-6856-01 3 184076073 184076073 C T CLCN2 Silent p.L126L 0.27 TCGA-F4-6856-01 3 184290563 184290563 A G EPHB3 Missense_Mutation p.N152S 0.09 tolerated(0.66) benign(0.074) TCGA-F4-6856-01 3 186395601 186395601 T A HRG Missense_Mutation p.S503T 0.36 tolerated(0.08) possibly_damaging(0.878) TCGA-F4-6856-01 3 186793642 186793642 G A ST6GAL1 3'UTR 0.20 TCGA-F4-6856-01 3 187446895 187446895 G A BCL6 Missense_Mutation p.A433V 0.31 tolerated(0.32) benign(0) TCGA-F4-6856-01 3 189526305 189526305 C T TP63 Missense_Mutation p.A190V 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-F4-6856-01 3 195594633 195594633 G - TNK2 Frame_Shift_Del p.Q909Rfs*2 0.17 TCGA-F4-6856-01 3 195701399 195701399 G A SDHAP1 RNA 0.12 TCGA-F4-6856-01 3 196050875 196050876 - A TM4SF19 Intron 0.14 TCGA-F4-6856-01 3 196754753 196754753 G A MFI2 Silent p.C26C 0.24 TCGA-F4-6856-01 3 32811409 32811409 C - CNOT10 Frame_Shift_Del p.P740Lfs*33 0.30 TCGA-F4-6856-01 3 33166011 33166011 G A CRTAP Missense_Mutation p.A245T 0.28 deleterious(0.03) possibly_damaging(0.497) TCGA-F4-6856-01 3 36899233 36899233 A C TRANK1 Silent p.S616S 0.34 TCGA-F4-6856-01 3 37089123 37089125 GAA - MLH1 In_Frame_Del p.K618del 0.51 TCGA-F4-6856-01 3 38316962 38316962 C - SLC22A13 Frame_Shift_Del p.P304Rfs*4 0.12 TCGA-F4-6856-01 3 38616871 38616871 G A SCN5A Missense_Mutation p.R1195C 0.21 deleterious(0) probably_damaging(0.961) TCGA-F4-6856-01 3 38739296 38739296 A - SCN10A Frame_Shift_Del p.F1805Lfs*8 0.08 TCGA-F4-6856-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.36 TCGA-F4-6856-01 3 40468845 40468845 G A ENTPD3 Missense_Mutation p.R479H 0.29 tolerated(0.58) benign(0.004) TCGA-F4-6856-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.61 deleterious(0) probably_damaging(0.954) TCGA-F4-6856-01 3 42201751 42201751 C T TRAK1 Intron 0.38 TCGA-F4-6856-01 3 42305099 42305099 G A CCK Silent p.C8C 0.33 TCGA-F4-6856-01 3 42906981 42906981 C T ACKR2 Silent p.A329A 0.38 TCGA-F4-6856-01 3 42908364 42908371 AGATTGAT GATTGA ACKR2 3'UTR 0.11 TCGA-F4-6856-01 3 44541092 44541092 C T ZNF852 Missense_Mutation p.G393S 0.23 tolerated(1) benign(0.015) TCGA-F4-6856-01 3 44701540 44701540 C T ZNF35 3'UTR 0.35 TCGA-F4-6856-01 3 44776774 44776774 T - ZNF501 3'UTR 0.29 TCGA-F4-6856-01 3 45637366 45637367 - C LIMD1 Frame_Shift_Ins p.Q334Pfs*65 0.22 TCGA-F4-6856-01 3 45730800 45730800 G A SACM1L 5'UTR 0.37 TCGA-F4-6856-01 3 46621457 46621457 C T TDGF1 Missense_Mutation p.P119S 0.11 tolerated(0.27) benign(0.124) TCGA-F4-6856-01 3 47037427 47037427 C T NBEAL2 Silent p.C679C 0.30 TCGA-F4-6856-01 3 48450804 48450804 G A PLXNB1 Missense_Mutation p.A2007V 0.37 deleterious(0) probably_damaging(0.993) TCGA-F4-6856-01 3 48731678 48731678 A - IP6K2 Intron 0.31 TCGA-F4-6856-01 3 49699976 49699976 C T BSN Silent p.C3566C 0.22 TCGA-F4-6856-01 3 49933627 49933627 C T MST1R Splice_Site p.X883_splice 0.31 TCGA-F4-6856-01 3 50219762 50219762 A G SEMA3F Missense_Mutation p.D230G 0.46 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 3 5025243 5025243 G T BHLHE40 Missense_Mutation p.D369Y 0.42 deleterious(0) possibly_damaging(0.873) TCGA-F4-6856-01 3 51400017 51400017 G A DOCK3 Silent p.S1735S 0.12 TCGA-F4-6856-01 3 51907946 51907946 G A IQCF5 Missense_Mutation p.R84C 0.31 deleterious(0.01) benign(0.193) TCGA-F4-6856-01 3 52263074 52263074 C T TWF2 Silent p.P342P 0.65 TCGA-F4-6856-01 3 52457190 52457190 T A PHF7 Missense_Mutation p.L335M 0.32 tolerated_low_confidence(0.08) benign(0.028) TCGA-F4-6856-01 3 52549477 52549479 CTC - STAB1 In_Frame_Del p.S1302del 0.36 TCGA-F4-6856-01 3 52834671 52834671 C T ITIH3 Missense_Mutation p.A398V 0.23 deleterious(0) possibly_damaging(0.635) TCGA-F4-6856-01 3 53779665 53779665 C T CACNA1D Silent p.C1027C 0.24 TCGA-F4-6856-01 3 56026205 56026205 G A ERC2 Missense_Mutation p.A712V 0.27 tolerated(1) benign(0.002) TCGA-F4-6856-01 3 56650074 56650074 G A CCDC66 Silent p.V612V 0.28 TCGA-F4-6856-01 3 57293936 57293936 A G APPL1 Missense_Mutation p.D516G 0.28 tolerated(0.28) benign(0.054) TCGA-F4-6856-01 3 57627437 57627438 - A DENND6A Frame_Shift_Ins p.A359Cfs*2 0.23 TCGA-F4-6856-01 3 58484468 58484468 G A KCTD6 5'UTR 0.04 TCGA-F4-6856-01 3 62556601 62556601 G A CADPS Silent p.A530A 0.30 TCGA-F4-6856-01 3 77147281 77147281 C T ROBO2 Missense_Mutation p.P76S 0.29 deleterious(0) unknown(0) TCGA-F4-6856-01 3 88040516 88040516 G C HTR1F Missense_Mutation p.R206T 0.26 tolerated(0.68) benign(0.099) TCGA-F4-6856-01 3 93692625 93692625 G A PROS1 5'UTR 0.21 TCGA-F4-6856-01 3 93813134 93813134 A G NSUN3 Missense_Mutation p.D206G 0.19 deleterious(0) possibly_damaging(0.874) TCGA-F4-6856-01 3 97454804 97454804 A G EPHA6 Silent p.P990P 0.31 TCGA-F4-6856-01 4 100200723 100200723 T G ADH1A Splice_Site p.X322_splice 0.05 TCGA-F4-6856-01 4 10105577 10105577 C T WDR1 Missense_Mutation p.A58T 0.21 deleterious(0.01) possibly_damaging(0.766) TCGA-F4-6856-01 4 103528829 103528829 T C NFKB1 Silent p.T716T 0.24 TCGA-F4-6856-01 4 104030096 104030096 T C CENPE Silent p.Q2625Q 0.28 TCGA-F4-6856-01 4 106155179 106155179 C T TET2 Missense_Mutation p.T27I 0.21 tolerated(0.19) benign(0.01) TCGA-F4-6856-01 4 106159463 106159463 G A TET2 Intron 0.31 TCGA-F4-6856-01 4 106193843 106193843 G T TET2 Missense_Mutation p.Q1435H 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 4 107165901 107165901 C T TBCK Missense_Mutation p.A318T 0.23 tolerated(0.15) benign(0.002) TCGA-F4-6856-01 4 110415836 110415841 GCTCCA - SEC24B In_Frame_Del p.P441_A442del 0.37 TCGA-F4-6856-01 4 114271400 114271400 A - ANK2 Frame_Shift_Del p.N1476Mfs*12 0.18 TCGA-F4-6856-01 4 120079273 120079273 C T MYOZ2 Nonsense_Mutation p.R115* 0.34 TCGA-F4-6856-01 4 122824090 122824090 T C TRPC3 Missense_Mutation p.M794V 0.34 tolerated(0.15) benign(0.002) TCGA-F4-6856-01 4 122853987 122853987 G A TRPC3 Silent p.C142C 0.30 TCGA-F4-6856-01 4 128886338 128886338 T G MFSD8 5'UTR 0.19 TCGA-F4-6856-01 4 129208608 129208608 C T PGRMC2 Missense_Mutation p.G137D 0.33 deleterious(0) probably_damaging(0.984) TCGA-F4-6856-01 4 129793164 129793164 G A JADE1 Missense_Mutation p.R759Q 0.33 tolerated(0.05) benign(0.107) TCGA-F4-6856-01 4 13370197 13370197 C T RAB28 Missense_Mutation p.M217I 0.21 tolerated(0.67) benign(0) TCGA-F4-6856-01 4 1343514 1343514 C - UVSSA Frame_Shift_Del p.R103Gfs*7 0.28 TCGA-F4-6856-01 4 138450998 138450998 T - PCDH18 Frame_Shift_Del p.R749Gfs*17 0.24 TCGA-F4-6856-01 4 143029257 143029257 A T INPP4B Missense_Mutation p.M788K 0.28 deleterious(0) benign(0.038) TCGA-F4-6856-01 4 144474296 144474296 G A SMARCA5 Missense_Mutation p.A1040T 0.29 tolerated(1) benign(0.002) TCGA-F4-6856-01 4 15060810 15060810 G T CPEB2 Splice_Site p.X861_splice 0.28 TCGA-F4-6856-01 4 15067830 15067830 C T CPEB2 Silent p.G977G 0.19 TCGA-F4-6856-01 4 153690541 153690541 G A TIGD4 3'UTR 0.09 TCGA-F4-6856-01 4 154388377 154388377 C T KIAA0922 Missense_Mutation p.P47S 0.29 tolerated(0.45) probably_damaging(0.999) TCGA-F4-6856-01 4 159566267 159566267 C T RXFP1 Missense_Mutation p.A441V 0.31 deleterious(0.03) possibly_damaging(0.673) TCGA-F4-6856-01 4 166981212 166981212 G A TLL1 Missense_Mutation p.G627S 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-F4-6856-01 4 17585155 17585155 T C LAP3 Silent p.D143D 0.11 TCGA-F4-6856-01 4 17661643 17661643 T G FAM184B Missense_Mutation p.T588P 0.31 tolerated(0.15) benign(0.002) TCGA-F4-6856-01 4 1807182 1807182 G A FGFR3 Missense_Mutation p.V507I 0.30 deleterious(0) benign(0.285) TCGA-F4-6856-01 4 1843301 1843301 A G LETM1 Missense_Mutation p.S123P 0.39 deleterious(0) possibly_damaging(0.905) TCGA-F4-6856-01 4 186353224 186353224 T A C4orf47 Missense_Mutation p.D63E 0.32 tolerated(0.48) benign(0.018) TCGA-F4-6856-01 4 187518259 187518259 C T FAT1 Silent p.T4145T 0.33 TCGA-F4-6856-01 4 1993423 1993423 T C NELFA Missense_Mutation p.E88G 0.08 deleterious(0) benign(0.214) TCGA-F4-6856-01 4 2065843 2065843 C T NAT8L Missense_Mutation p.R300C 0.33 deleterious(0) probably_damaging(0.952) TCGA-F4-6856-01 4 25780753 25780767 AGAGAGAACACCACA - SEL1L3 In_Frame_Del p.L839_L843del 0.17 TCGA-F4-6856-01 4 30724440 30724440 G A PCDH7 Missense_Mutation p.V466M 0.26 deleterious(0.02) probably_damaging(0.945) TCGA-F4-6856-01 4 3214370 3214371 CA - HTT Frame_Shift_Del p.H2238Ffs*6 0.20 TCGA-F4-6856-01 4 37447379 37447379 T - KIAA1239 Frame_Shift_Del p.W1259Gfs*22 0.12 TCGA-F4-6856-01 4 3768829 3768829 C T ADRA2C Missense_Mutation p.R166C 0.24 deleterious(0) probably_damaging(0.993) TCGA-F4-6856-01 4 4276151 4276151 C T LYAR Missense_Mutation p.A259T 0.32 tolerated(0.43) benign(0.003) TCGA-F4-6856-01 4 47887916 47887916 G - NFXL1 Frame_Shift_Del p.K549Sfs*54 0.16 TCGA-F4-6856-01 4 48088602 48088602 G A TXK Silent p.S279S 0.29 TCGA-F4-6856-01 4 48584670 48584670 C T FRYL Nonsense_Mutation p.W610* 0.27 TCGA-F4-6856-01 4 4864489 4864489 G A MSX1 Silent p.T177T 0.28 TCGA-F4-6856-01 4 55564728 55564728 C T KIT Missense_Mutation p.P206S 0.32 tolerated(0.52) benign(0.05) TCGA-F4-6856-01 4 6330993 6330993 C T PPP2R2C Missense_Mutation p.D350N 0.39 tolerated(0.23) benign(0.421) TCGA-F4-6856-01 4 6596420 6596420 C T MAN2B2 Missense_Mutation p.R340C 0.18 deleterious(0.05) possibly_damaging(0.631) TCGA-F4-6856-01 4 66467570 66467570 G A EPHA5 Silent p.C233C 0.29 TCGA-F4-6856-01 4 68338301 68338301 A G CENPC 3'UTR 0.29 TCGA-F4-6856-01 4 68501274 68501274 C T UBA6 Missense_Mutation p.R580H 0.43 deleterious(0) probably_damaging(0.996) TCGA-F4-6856-01 4 6878464 6878464 C T KIAA0232 Missense_Mutation p.R1330C 0.38 tolerated_low_confidence(0.08) benign(0.006) TCGA-F4-6856-01 4 7065921 7065921 G A GRPEL1 Missense_Mutation p.T31M 0.22 deleterious(0.02) benign(0.048) TCGA-F4-6856-01 4 71588260 71588260 G C RUFY3 5'UTR 0.24 TCGA-F4-6856-01 4 71629358 71629358 G A RUFY3 Missense_Mutation p.A148T 0.07 tolerated(0.44) benign(0.384) TCGA-F4-6856-01 4 74124069 74124069 C T ANKRD17 Missense_Mutation p.G106D 0.33 probably_damaging(0.931) TCGA-F4-6856-01 4 77230920 77230920 G A FAM47E-STBD1 Missense_Mutation p.A282T 0.41 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 4 77476771 77476771 G - SHROOM3 Frame_Shift_Del p.G61Afs*6 0.23 TCGA-F4-6856-01 4 79328874 79328874 A G FRAS1 Missense_Mutation p.H1396R 0.33 benign(0.002) TCGA-F4-6856-01 4 8603029 8603029 G T CPZ Missense_Mutation p.G101C 0.28 deleterious(0) probably_damaging(0.997) TCGA-F4-6856-01 4 8605806 8605806 G A CPZ Silent p.T200T 0.17 TCGA-F4-6856-01 4 87728750 87728750 C T PTPN13 Silent p.G2266G 0.36 TCGA-F4-6856-01 4 88533665 88533665 G A DSPP Nonsense_Mutation p.W109* 0.29 TCGA-F4-6856-01 4 9785349 9785349 G C DRD5 3'UTR 0.13 TCGA-F4-6856-01 4 9785421 9785421 G T DRD5 3'UTR 0.08 TCGA-F4-6856-01 4 982997 982997 C - SLC26A1 Frame_Shift_Del p.G577Afs*46 0.14 TCGA-F4-6856-01 4 983095 983095 C - SLC26A1 Frame_Shift_Del p.P545Rfs*78 0.21 TCGA-F4-6856-01 4 98633896 98633896 C T STPG2 Missense_Mutation p.R425H 0.27 deleterious(0.01) possibly_damaging(0.749) TCGA-F4-6856-01 5 102612501 102612501 A - C5orf30 3'UTR 0.16 TCGA-F4-6856-01 5 107716444 107716444 C G FBXL17 Missense_Mutation p.E317Q 0.07 tolerated(0.12) benign(0.038) TCGA-F4-6856-01 5 112128186 112128186 G A APC Missense_Mutation p.R230H 0.33 possibly_damaging(0.568) TCGA-F4-6856-01 5 112889521 112889521 A - YTHDC2 Frame_Shift_Del p.N676Tfs*9 0.31 TCGA-F4-6856-01 5 126154686 126154686 A G LMNB1 Missense_Mutation p.M338V 0.31 tolerated(0.32) benign(0.016) TCGA-F4-6856-01 5 126206168 126206168 C T MARCH3 3'UTR 0.29 TCGA-F4-6856-01 5 133536739 133536739 C T PPP2CA Silent p.S171S 0.18 TCGA-F4-6856-01 5 133643939 133643939 C A CDKL3 Missense_Mutation p.L418F 0.32 tolerated(0.62) benign(0.09) TCGA-F4-6856-01 5 134785157 134785157 G - TIFAB Frame_Shift_Del p.P158Lfs*58 0.24 TCGA-F4-6856-01 5 137844392 137844392 C T ETF1 Silent p.G399G 0.29 TCGA-F4-6856-01 5 138208594 138208594 A - LRRTM2 3'UTR 0.19 TCGA-F4-6856-01 5 138209670 138209670 G A LRRTM2 Nonsense_Mutation p.R194* 0.23 TCGA-F4-6856-01 5 139201570 139201570 C A PSD2 Missense_Mutation p.P397H 0.26 deleterious(0) possibly_damaging(0.759) TCGA-F4-6856-01 5 139903696 139903700 AAAAG - ANKHD1 Frame_Shift_Del p.R1460Kfs*14 0.31 TCGA-F4-6856-01 5 139943438 139943438 T C APBB3 Missense_Mutation p.I38V 0.38 tolerated(0.5) probably_damaging(0.982) TCGA-F4-6856-01 5 140176838 140176838 C - PCDHA2 Frame_Shift_Del p.K766Rfs*29 0.26 TCGA-F4-6856-01 5 140188380 140188380 C T PCDHA4 Silent p.T536T 0.31 TCGA-F4-6856-01 5 140209185 140209185 G A PCDHA6 Silent p.A503A 0.36 TCGA-F4-6856-01 5 140250457 140250457 T G PCDHA11 Missense_Mutation p.V590G 0.30 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-F4-6856-01 5 140256422 140256422 C T PCDHA12 Silent p.F455F 0.06 TCGA-F4-6856-01 5 140256742 140256742 C T PCDHA12 Missense_Mutation p.A562V 0.32 deleterious_low_confidence(0.04) benign(0.209) TCGA-F4-6856-01 5 140257164 140257164 G A PCDHA12 Missense_Mutation p.A703T 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.634) TCGA-F4-6856-01 5 140516620 140516620 G A PCDHB5 Missense_Mutation p.R535H 0.23 deleterious_low_confidence(0.05) benign(0.152) TCGA-F4-6856-01 5 140516671 140516671 A G PCDHB5 Missense_Mutation p.D552G 0.16 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-F4-6856-01 5 140531213 140531213 C T PCDHB6 Missense_Mutation p.R459C 0.33 deleterious_low_confidence(0.01) benign(0.04) TCGA-F4-6856-01 5 140580756 140580756 T C PCDHB11 Missense_Mutation p.I470T 0.27 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-F4-6856-01 5 140591676 140591676 A - PCDHB12 3'UTR 0.25 TCGA-F4-6856-01 5 140741031 140741031 C T PCDHGB2 Silent p.S443S 0.34 TCGA-F4-6856-01 5 140753711 140753711 G A PCDHGA6 Missense_Mutation p.G21R 0.28 tolerated_low_confidence(0.06) benign(0.02) TCGA-F4-6856-01 5 14508342 14508342 C T TRIO Silent p.P3035P 0.16 TCGA-F4-6856-01 5 145608543 145608543 G A RBM27 Missense_Mutation p.G113D 0.29 tolerated(0.65) benign(0.033) TCGA-F4-6856-01 5 145969652 145969652 C - PPP2R2B Frame_Shift_Del p.G400Afs*31 0.13 TCGA-F4-6856-01 5 14693136 14693136 G A FAM105B Silent p.V346V 0.29 TCGA-F4-6856-01 5 149763436 149763436 C T TCOF1 Intron 0.35 TCGA-F4-6856-01 5 149777965 149777965 C T TCOF1 Missense_Mutation p.A1464V 0.27 tolerated_low_confidence(0.07) unknown(0) TCGA-F4-6856-01 5 150031813 150031813 G A SYNPO 3'UTR 0.35 TCGA-F4-6856-01 5 151170527 151170527 G A G3BP1 Silent p.T85T 0.30 TCGA-F4-6856-01 5 154272092 154272092 G A GEMIN5 Silent p.C1205C 0.35 TCGA-F4-6856-01 5 156590151 156590151 C T FAM71B Silent p.A375A 0.44 TCGA-F4-6856-01 5 159505159 159505159 C T PWWP2A 3'UTR 0.31 TCGA-F4-6856-01 5 159821847 159821847 T C C5orf54 Missense_Mutation p.I217M 0.31 tolerated(0.24) benign(0.105) TCGA-F4-6856-01 5 162944495 162944496 - T MAT2B Intron 0.22 TCGA-F4-6856-01 5 170221243 170221243 G A GABRP Missense_Mutation p.V61I 0.32 deleterious(0.03) benign(0.203) TCGA-F4-6856-01 5 171777528 171777528 G A SH3PXD2B Missense_Mutation p.P284L 0.19 deleterious(0.04) benign(0.002) TCGA-F4-6856-01 5 172744951 172744951 C T STC2 Missense_Mutation p.A270T 0.39 tolerated_low_confidence(0.22) benign(0.009) TCGA-F4-6856-01 5 173316632 173316633 - CAAG CPEB4 5'UTR 0.25 TCGA-F4-6856-01 5 175775279 175775279 C T KIAA1191 Silent p.P180P 0.30 TCGA-F4-6856-01 5 176083739 176083739 C T TSPAN17 Silent p.C226C 0.35 TCGA-F4-6856-01 5 176737435 176737435 G A MXD3 Missense_Mutation p.H105Y 0.15 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 5 176759097 176759097 C T LMAN2 Missense_Mutation p.R354H 0.24 deleterious(0.02) probably_damaging(0.991) TCGA-F4-6856-01 5 177166115 177166115 G A FAM153A Silent p.N110N 0.08 TCGA-F4-6856-01 5 178413460 178413460 C T GRM6 Missense_Mutation p.A599T 0.30 tolerated(0.06) benign(0.081) TCGA-F4-6856-01 5 179291053 179291053 C T TBC1D9B Missense_Mutation p.A1050T 0.28 deleterious(0) possibly_damaging(0.905) TCGA-F4-6856-01 5 1816042 1816042 C T NDUFS6 3'UTR 0.27 TCGA-F4-6856-01 5 32074219 32074219 C T PDZD2 Missense_Mutation p.R1003C 0.17 tolerated(0.18) benign(0) TCGA-F4-6856-01 5 34998803 34998803 T G AGXT2 3'UTR 0.26 TCGA-F4-6856-01 5 35759804 35759804 T G SPEF2 Missense_Mutation p.N1201K 0.29 tolerated(0.92) benign(0.01) TCGA-F4-6856-01 5 37333653 37333653 T - NUP155 Frame_Shift_Del p.N477Tfs*7 0.17 TCGA-F4-6856-01 5 39315890 39315890 T C C9 Missense_Mutation p.Y286C 0.28 deleterious(0.04) benign(0.224) TCGA-F4-6856-01 5 40716477 40716477 T - TTC33 Frame_Shift_Del p.S187Vfs*7 0.25 TCGA-F4-6856-01 5 427756 427756 G - AHRR Frame_Shift_Del p.S244Hfs*15 0.31 TCGA-F4-6856-01 5 43173517 43173517 A - ZNF131 Frame_Shift_Del p.G353Efs*26 0.22 TCGA-F4-6856-01 5 482774 482774 G A SLC9A3 Silent p.R415R 0.33 TCGA-F4-6856-01 5 5476099 5476099 C T KIAA0947 Missense_Mutation p.P2143S 0.32 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 5 58272276 58272276 T - PDE4D Frame_Shift_Del p.K577Nfs*3 0.24 TCGA-F4-6856-01 5 6312464 6312464 G - CTD-2324F15.2 RNA 0.31 TCGA-F4-6856-01 5 63257020 63257020 C T HTR1A Missense_Mutation p.R176H 0.16 deleterious(0) probably_damaging(0.994) TCGA-F4-6856-01 5 65319176 65319176 T C ERBB2IP Missense_Mutation p.L219P 0.27 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 5 6620396 6620396 G A NSUN2 Missense_Mutation p.A213V 0.30 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 5 6625777 6625777 G T NSUN2 Missense_Mutation p.P122H 0.07 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 5 6750565 6750565 G A PAPD7 Silent p.L353L 0.33 TCGA-F4-6856-01 5 68687733 68687734 - A RAD17 Frame_Shift_Ins p.P375Tfs*2 0.30 TCGA-F4-6856-01 5 68715821 68715821 G - MARVELD2 Frame_Shift_Del p.A205Pfs*58 0.23 TCGA-F4-6856-01 5 70757681 70757682 AG - BDP1 Frame_Shift_Del p.R177Afs*19 0.27 TCGA-F4-6856-01 5 74325792 74325792 C T GCNT4 Nonsense_Mutation p.W24* 0.40 TCGA-F4-6856-01 5 76709089 76709089 C T PDE8B Silent p.D622D 0.27 TCGA-F4-6856-01 5 78612006 78612006 C A JMY Missense_Mutation p.T948K 0.19 tolerated(0.17) probably_damaging(0.999) TCGA-F4-6856-01 5 80171606 80171606 G A MSH3 Missense_Mutation p.M1113I 0.15 tolerated(1) benign(0) TCGA-F4-6856-01 5 81574222 81574222 C T RPS23 5'UTR 0.25 TCGA-F4-6856-01 5 88056848 88056848 A T MEF2C Missense_Mutation p.I138N 0.11 deleterious(0.01) possibly_damaging(0.837) TCGA-F4-6856-01 5 89985864 89985864 A G GPR98 Missense_Mutation p.E2226G 0.29 possibly_damaging(0.727) TCGA-F4-6856-01 5 93859773 93859773 G A KIAA0825 Silent p.S54S 0.31 TCGA-F4-6856-01 5 94417147 94417147 G A MCTP1 Intron 0.29 TCGA-F4-6856-01 5 98236676 98236676 C T CHD1 Missense_Mutation p.R233H 0.28 deleterious(0.01) probably_damaging(0.943) TCGA-F4-6856-01 6 10687713 10687713 C A C6orf52 Missense_Mutation p.S24I 0.36 tolerated(0.2) possibly_damaging(0.501) TCGA-F4-6856-01 6 108984950 108984950 C T FOXO3 Missense_Mutation p.A305V 0.08 tolerated(0.13) benign(0.029) TCGA-F4-6856-01 6 109871412 109871412 C A AK9 Nonsense_Mutation p.G949* 0.09 TCGA-F4-6856-01 6 11191046 11191046 C T NEDD9 Silent p.P352P 0.28 TCGA-F4-6856-01 6 116599736 116599736 G A TSPYL1 Missense_Mutation p.R420C 0.32 tolerated(0.18) benign(0.045) TCGA-F4-6856-01 6 116600942 116600942 T A TSPYL1 Missense_Mutation p.I18F 0.56 tolerated(0.31) benign(0.005) TCGA-F4-6856-01 6 116833269 116833269 T C FAM26E Missense_Mutation p.L137P 0.33 deleterious(0) possibly_damaging(0.771) TCGA-F4-6856-01 6 117681522 117681522 A G ROS1 Missense_Mutation p.V1143A 0.25 tolerated(0.66) benign(0.006) TCGA-F4-6856-01 6 128307015 128307015 C - PTPRK Frame_Shift_Del p.Y1041Tfs*61 0.29 TCGA-F4-6856-01 6 136582093 136582093 T C BCLAF1 3'UTR 0.10 TCGA-F4-6856-01 6 142741165 142741165 G A GPR126 Nonsense_Mutation p.W1081* 0.23 TCGA-F4-6856-01 6 143081347 143081347 G A HIVEP2 Silent p.C2026C 0.14 TCGA-F4-6856-01 6 147680334 147680334 C T STXBP5 Missense_Mutation p.T807M 0.24 deleterious(0.04) benign(0.007) TCGA-F4-6856-01 6 148854041 148854041 G A SASH1 Missense_Mutation p.R558H 0.31 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 6 151671215 151671215 C T AKAP12 Silent p.G563G 0.33 TCGA-F4-6856-01 6 159653120 159653120 C T FNDC1 Missense_Mutation p.R526C 0.35 deleterious_low_confidence(0.04) unknown(0) TCGA-F4-6856-01 6 161143511 161143512 - CCA PLG In_Frame_Ins p.T394dup 0.21 TCGA-F4-6856-01 6 161969982 161969983 - C PARK2 Frame_Shift_Ins p.V330Rfs*17 0.25 TCGA-F4-6856-01 6 16327684 16327684 G - ATXN1 Frame_Shift_Del p.S287Pfs*38 0.30 TCGA-F4-6856-01 6 165706907 165706907 C T C6orf118 Missense_Mutation p.R372Q 0.23 tolerated(0.15) benign(0.01) TCGA-F4-6856-01 6 166578343 166578343 C T T Missense_Mutation p.A205T 0.25 deleterious(0) possibly_damaging(0.461) TCGA-F4-6856-01 6 25450217 25450217 C A LRRC16A Missense_Mutation p.P155T 0.27 tolerated(0.16) benign(0.259) TCGA-F4-6856-01 6 29408296 29408296 C T OR10C1 Silent p.C168C 0.28 TCGA-F4-6856-01 6 29692219 29692219 C T HLA-F Missense_Mutation p.R202C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.853) TCGA-F4-6856-01 6 29796593 29796593 C G HLA-G Missense_Mutation p.A206G 0.30 deleterious_low_confidence(0.01) benign(0.109) TCGA-F4-6856-01 6 30572801 30572801 T C PPP1R10 Silent p.K308K 0.40 TCGA-F4-6856-01 6 30681462 30681463 - T MDC1 Frame_Shift_Ins p.S184Ifs*14 0.27 TCGA-F4-6856-01 6 30863232 30863232 G A DDR1 Missense_Mutation p.R522H 0.25 tolerated(0.42) possibly_damaging(0.676) TCGA-F4-6856-01 6 30864517 30864517 G - DDR1 Frame_Shift_Del p.G583Afs*70 0.28 TCGA-F4-6856-01 6 30866776 30866776 G A DDR1 Missense_Mutation p.E861K 0.19 deleterious(0) benign(0.218) TCGA-F4-6856-01 6 30916717 30916717 C T DPCR1 Missense_Mutation p.T159M 0.22 deleterious(0.02) probably_damaging(0.987) TCGA-F4-6856-01 6 31691628 31691628 C T C6orf25 Missense_Mutation p.R92W 0.16 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-F4-6856-01 6 31837022 31837022 T C SLC44A4 Silent p.T381T 0.10 TCGA-F4-6856-01 6 32024394 32024394 G A TNXB Silent p.R2704R 0.14 TCGA-F4-6856-01 6 32030171 32030171 C T TNXB Missense_Mutation p.V2311M 0.32 probably_damaging(0.912) TCGA-F4-6856-01 6 3224977 3224977 G - TUBB2B 3'UTR 0.22 TCGA-F4-6856-01 6 32520682 32520682 G A RNU1-61P 5'Flank 0.33 TCGA-F4-6856-01 6 32800570 32800570 G A TAP2 Missense_Mutation p.A326V 0.14 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.29 TCGA-F4-6856-01 6 3287187 3287187 G A SLC22A23 Silent p.C484C 0.33 TCGA-F4-6856-01 6 32945764 32945766 AGC - BRD2 In_Frame_Del p.A521del 0.35 TCGA-F4-6856-01 6 33272929 33272929 G T TAPBP Silent p.A235A 0.38 TCGA-F4-6856-01 6 33283467 33283467 G - ZBTB22 Frame_Shift_Del p.S410Pfs*45 0.27 TCGA-F4-6856-01 6 33409383 33409383 T C SYNGAP1 Missense_Mutation p.L714P 0.17 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 6 34512235 34512235 C T SPDEF 5'UTR 0.35 TCGA-F4-6856-01 6 34614459 34614459 C T C6orf106 Missense_Mutation p.V144I 0.22 tolerated(0.12) possibly_damaging(0.842) TCGA-F4-6856-01 6 34839395 34839395 G A UHRF1BP1 Missense_Mutation p.G1339D 0.22 tolerated(0.32) probably_damaging(0.992) TCGA-F4-6856-01 6 35107908 35107908 G A TCP11 Intron 0.39 TCGA-F4-6856-01 6 35610510 35610511 CT - FKBP5 Frame_Shift_Del p.R31Gfs*13 0.16 TCGA-F4-6856-01 6 35858676 35858676 A G SRPK1 Silent p.C63C 0.36 TCGA-F4-6856-01 6 36867370 36867371 - C C6orf89 Frame_Shift_Ins p.Q61Afs*10 0.47 TCGA-F4-6856-01 6 38750805 38750805 C T DNAH8 Missense_Mutation p.P545L 0.36 benign(0.002) TCGA-F4-6856-01 6 38997982 38997982 A G DNAH8 Silent p.L4429L 0.26 TCGA-F4-6856-01 6 39839307 39839307 C T DAAM2 Missense_Mutation p.R335W 0.15 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 6 40360386 40360386 G A LRFN2 Missense_Mutation p.R556C 0.29 deleterious(0) probably_damaging(0.996) TCGA-F4-6856-01 6 41470686 41470686 G A RP11-328M4.3 RNA 0.34 TCGA-F4-6856-01 6 41712166 41712166 C T PGC Silent p.V99V 0.27 TCGA-F4-6856-01 6 41743223 41743223 G A FRS3 Missense_Mutation p.R63W 0.15 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 6 41756994 41756994 C T TOMM6 Silent p.L51L 0.11 TCGA-F4-6856-01 6 41897876 41897876 C A BYSL Silent p.T146T 0.24 TCGA-F4-6856-01 6 41898488 41898488 C T BYSL Missense_Mutation p.A229V 0.30 deleterious(0) probably_damaging(0.917) TCGA-F4-6856-01 6 42893066 42893066 C T PTCRA Silent p.D164D 0.32 TCGA-F4-6856-01 6 42942645 42942645 G A PEX6 Silent p.D338D 0.26 TCGA-F4-6856-01 6 44195023 44195023 G A SLC29A1 5'UTR 0.28 TCGA-F4-6856-01 6 46832914 46832915 - T GPR116 Frame_Shift_Ins p.Q619Tfs*21 0.21 TCGA-F4-6856-01 6 88074759 88074759 A - C6orf163 Frame_Shift_Del p.E214Nfs*4 0.24 TCGA-F4-6856-01 6 90494819 90494819 T C MDN1 Missense_Mutation p.Y454C 0.36 probably_damaging(0.95) TCGA-F4-6856-01 6 96657758 96657758 C - FUT9 3'UTR 0.25 TCGA-F4-6856-01 7 100253063 100253063 C T ACTL6B Silent p.S83S 0.30 TCGA-F4-6856-01 7 100253169 100253169 T C ACTL6B Missense_Mutation p.E48G 0.10 tolerated(0.05) benign(0.155) TCGA-F4-6856-01 7 100334171 100334171 G A ZAN Missense_Mutation p.A58T 0.11 benign(0.072) TCGA-F4-6856-01 7 100485673 100485673 A G SRRT Silent p.P779P 0.31 TCGA-F4-6856-01 7 102957291 102957291 A G DNAJC2 Silent p.A471A 0.34 TCGA-F4-6856-01 7 105098264 105098264 C T PUS7 Silent p.T653T 0.29 TCGA-F4-6856-01 7 107115558 107115558 T - GPR22 Frame_Shift_Del p.L353* 0.21 TCGA-F4-6856-01 7 1098371 1098371 C T GPR146 3'UTR 0.12 TCGA-F4-6856-01 7 114304493 114304493 T C FOXP2 Splice_Site p.X693_splice 0.26 TCGA-F4-6856-01 7 120595731 120595731 T C ING3 Intron 0.18 TCGA-F4-6856-01 7 120629716 120629716 G A CPED1 Missense_Mutation p.C14Y 0.29 tolerated(0.05) unknown(0) TCGA-F4-6856-01 7 121726174 121726174 A - AASS Frame_Shift_Del p.P693Qfs*3 0.20 TCGA-F4-6856-01 7 127979335 127979335 T - RBM28 Frame_Shift_Del p.A107Pfs*10 0.24 TCGA-F4-6856-01 7 128484111 128484111 G A FLNC Missense_Mutation p.G995S 0.24 deleterious(0.03) probably_damaging(1) TCGA-F4-6856-01 7 128488849 128488849 C - FLNC Frame_Shift_Del p.E1582Rfs*25 0.38 TCGA-F4-6856-01 7 128524152 128524152 G T KCP RNA 0.22 TCGA-F4-6856-01 7 129103982 129103982 C A STRIP2 Missense_Mutation p.P550H 0.30 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 7 134132761 134132761 C T AKR1B1 Missense_Mutation p.A238T 0.31 tolerated(0.05) possibly_damaging(0.78) TCGA-F4-6856-01 7 134223761 134223761 C T AKR1B10 Silent p.N300N 0.30 TCGA-F4-6856-01 7 138552870 138552870 G A KIAA1549 Missense_Mutation p.R1594W 0.19 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 7 138936795 138936795 T C UBN2 Missense_Mutation p.S219P 0.29 deleterious(0) probably_damaging(0.992) TCGA-F4-6856-01 7 139229011 139229011 G A CLEC2L Missense_Mutation p.V190M 0.26 deleterious(0.01) probably_damaging(0.92) TCGA-F4-6856-01 7 140394519 140394519 G A ADCK2 Silent p.G599G 0.31 TCGA-F4-6856-01 7 141889261 141889261 C T RP11-1220K2.2 Silent p.N1434N 0.46 TCGA-F4-6856-01 7 142574923 142574923 G T TRPV6 Silent p.R153R 0.28 TCGA-F4-6856-01 7 142575470 142575470 C T TRPV6 Missense_Mutation p.A95T 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-F4-6856-01 7 143956189 143956190 - A OR2A7 Frame_Shift_Ins p.C178Lfs*2 0.11 TCGA-F4-6856-01 7 144062225 144062225 G A ARHGEF5 Silent p.Q821Q 0.10 TCGA-F4-6856-01 7 149190058 149190058 C T ZNF746 Missense_Mutation p.A138T 0.11 deleterious(0) probably_damaging(0.992) TCGA-F4-6856-01 7 149477527 149477527 A G SSPO RNA 0.31 TCGA-F4-6856-01 7 149558561 149558561 C T ZNF862 Missense_Mutation p.A771V 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-F4-6856-01 7 150439743 150439743 C T GIMAP5 Silent p.S172S 0.29 TCGA-F4-6856-01 7 150695700 150695700 C T NOS3 Missense_Mutation p.R250C 0.32 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 7 1518438 1518438 G A INTS1 Silent p.G1471G 0.14 TCGA-F4-6856-01 7 156802991 156802992 - G MNX1 Frame_Shift_Ins p.R19Tfs*37 0.18 TCGA-F4-6856-01 7 1787156 1787156 G - ELFN1 3'UTR 0.24 TCGA-F4-6856-01 7 21659597 21659597 C A DNAH11 Silent p.T1472T 0.29 TCGA-F4-6856-01 7 21892155 21892155 G A DNAH11 Missense_Mutation p.R3663H 0.22 benign(0.071) TCGA-F4-6856-01 7 21907529 21907529 G C DNAH11 Missense_Mutation p.D3922H 0.12 possibly_damaging(0.834) TCGA-F4-6856-01 7 22184768 22184768 G A RAPGEF5 Nonsense_Mutation p.Q541* 0.27 TCGA-F4-6856-01 7 23802530 23802530 A - STK31 Frame_Shift_Del p.T470Hfs*9 0.30 TCGA-F4-6856-01 7 2629631 2629632 CA - IQCE Frame_Shift_Del p.H379Qfs*101 0.10 TCGA-F4-6856-01 7 28997348 28997348 C T AC005013.5 RNA 0.41 TCGA-F4-6856-01 7 29606086 29606086 G A PRR15 Silent p.P47P 0.27 TCGA-F4-6856-01 7 31617587 31617587 A T CCDC129 Missense_Mutation p.S263C 0.18 deleterious(0.05) probably_damaging(0.936) TCGA-F4-6856-01 7 31876874 31876874 C T PDE1C Missense_Mutation p.A435T 0.37 deleterious(0) probably_damaging(0.917) TCGA-F4-6856-01 7 37989953 37989953 C T EPDR1 Silent p.C210C 0.22 TCGA-F4-6856-01 7 42004849 42004849 G A GLI3 Silent p.A1274A 0.26 TCGA-F4-6856-01 7 42006214 42006214 G A GLI3 Silent p.S819S 0.32 TCGA-F4-6856-01 7 43447326 43447326 C T HECW1 Missense_Mutation p.A266V 0.31 tolerated(0.11) benign(0.41) TCGA-F4-6856-01 7 43508601 43508601 G A HECW1 Missense_Mutation p.R999H 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-F4-6856-01 7 44091458 44091458 C T DBNL Missense_Mutation p.L57F 0.40 deleterious(0.01) possibly_damaging(0.464) TCGA-F4-6856-01 7 44444053 44444053 C T NUDCD3 Missense_Mutation p.G258R 0.36 deleterious(0.02) probably_damaging(0.909) TCGA-F4-6856-01 7 45004046 45004046 C T MYO1G Missense_Mutation p.G867R 0.47 tolerated(0.57) benign(0.015) TCGA-F4-6856-01 7 45010598 45010598 C T MYO1G Missense_Mutation p.A303T 0.32 tolerated(0.55) benign(0.009) TCGA-F4-6856-01 7 45115629 45115629 C T CCM2 Silent p.G457G 0.24 TCGA-F4-6856-01 7 45148531 45148531 C T TBRG4 Missense_Mutation p.M102I 0.20 tolerated(0.18) benign(0) TCGA-F4-6856-01 7 45788243 45788243 T - SEPT7P2 RNA 0.34 TCGA-F4-6856-01 7 49951784 49951784 G A VWC2 3'UTR 0.10 TCGA-F4-6856-01 7 50455122 50455122 C T IKZF1 Intron 0.34 TCGA-F4-6856-01 7 5256730 5256730 C T WIPI2 Missense_Mutation p.A163V 0.37 deleterious(0.04) benign(0.12) TCGA-F4-6856-01 7 56128596 56128596 T C CCT6A Missense_Mutation p.V437A 0.27 deleterious(0.03) possibly_damaging(0.831) TCGA-F4-6856-01 7 6187417 6187417 G A USP42 Missense_Mutation p.S427N 0.41 tolerated(0.41) benign(0.125) TCGA-F4-6856-01 7 6431665 6431665 C T RAC1 Missense_Mutation p.P73L 0.33 deleterious(0.01) possibly_damaging(0.799) TCGA-F4-6856-01 7 73085564 73085564 G A VPS37D Missense_Mutation p.R205Q 0.22 tolerated(0.36) benign(0.14) TCGA-F4-6856-01 7 73731911 73731911 G A CLIP2 Missense_Mutation p.R12H 0.27 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 7 73787325 73787325 G T CLIP2 Missense_Mutation p.A482S 0.28 tolerated(0.14) benign(0.018) TCGA-F4-6856-01 7 73938448 73938448 C T GTF2IRD1 Missense_Mutation p.R384W 0.23 deleterious(0) probably_damaging(0.996) TCGA-F4-6856-01 7 74212407 74212407 G A GTF2IRD2 Missense_Mutation p.R482C 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-F4-6856-01 7 74564001 74564001 C T GTF2IRD2B Missense_Mutation p.T583M 0.35 tolerated(0.16) probably_damaging(0.996) TCGA-F4-6856-01 7 7495687 7495687 A G COL28A1 Silent p.S453S 0.15 TCGA-F4-6856-01 7 75052330 75052330 G A POM121C Missense_Mutation p.A402V 0.19 tolerated(0.4) possibly_damaging(0.701) TCGA-F4-6856-01 7 75513060 75513060 G A RHBDD2 Missense_Mutation p.A211T 0.27 deleterious(0.01) possibly_damaging(0.598) TCGA-F4-6856-01 7 75625682 75625682 C A STYXL1 3'UTR 0.17 TCGA-F4-6856-01 7 81335624 81335624 A C HGF Missense_Mutation p.L579R 0.38 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 7 82390092 82390092 C T PCLO Missense_Mutation p.V5051M 0.25 unknown(0) TCGA-F4-6856-01 7 82791923 82791923 C - PCLO 5'UTR 0.43 TCGA-F4-6856-01 7 87848198 87848198 A G SRI Silent p.G37G 0.19 TCGA-F4-6856-01 7 92219599 92219600 - C FAM133B Frame_Shift_Ins p.K3Efs*58 0.30 TCGA-F4-6856-01 7 94539321 94539321 T C PPP1R9A 5'UTR 0.25 TCGA-F4-6856-01 7 95818946 95818946 T C SLC25A13 Silent p.T265T 0.36 TCGA-F4-6856-01 7 97861179 97861179 C T TECPR1 Silent p.T637T 0.14 TCGA-F4-6856-01 7 98445669 98445669 G - TMEM130 3'UTR 0.25 TCGA-F4-6856-01 7 98630583 98630587 ACAAC CAACA SMURF1 Intron 0.10 TCGA-F4-6856-01 7 99720175 99720175 G A CNPY4 Missense_Mutation p.R106H 0.21 deleterious(0.03) benign(0.036) TCGA-F4-6856-01 8 103307499 103307499 G A UBR5 Missense_Mutation p.R1331C 0.29 tolerated(0.06) probably_damaging(0.988) TCGA-F4-6856-01 8 104831715 104831715 G - RIMS2 Intron 0.14 TCGA-F4-6856-01 8 104897537 104897537 C T RIMS2 Missense_Mutation p.P237L 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-F4-6856-01 8 105503047 105503047 C A LRP12 Missense_Mutation p.A812S 0.10 tolerated_low_confidence(0.32) benign(0.001) TCGA-F4-6856-01 8 113420585 113420585 C T CSMD3 Missense_Mutation p.G1856E 0.38 deleterious(0.01) possibly_damaging(0.881) TCGA-F4-6856-01 8 113871421 113871421 T A CSMD3 Missense_Mutation p.S570C 0.26 deleterious(0) probably_damaging(0.986) TCGA-F4-6856-01 8 114389091 114389091 G A CSMD3 Intron 0.33 TCGA-F4-6856-01 8 12287909 12287909 C T FAM86B2 Missense_Mutation p.E98K 0.17 tolerated(0.05) benign(0.411) TCGA-F4-6856-01 8 124037257 124037260 AATA - DERL1 Frame_Shift_Del p.L99Sfs*11 0.22 TCGA-F4-6856-01 8 126059456 126059456 C A KIAA0196 Missense_Mutation p.D833Y 0.46 deleterious(0) probably_damaging(0.995) TCGA-F4-6856-01 8 12957359 12957359 G - DLC1 Frame_Shift_Del p.S830Rfs*7 0.23 TCGA-F4-6856-01 8 131104282 131104282 T C ASAP1 Missense_Mutation p.T837A 0.30 tolerated(0.06) probably_damaging(0.956) TCGA-F4-6856-01 8 131793087 131793087 C T ADCY8 Missense_Mutation p.G1102D 0.30 deleterious(0) benign(0.004) TCGA-F4-6856-01 8 135490779 135490779 C A ZFAT Missense_Mutation p.E1226D 0.35 deleterious(0.01) unknown(0) TCGA-F4-6856-01 8 135545196 135545196 C T ZFAT Missense_Mutation p.C999Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 8 141461088 141461088 G A TRAPPC9 Missense_Mutation p.R227C 0.24 deleterious(0) probably_damaging(0.995) TCGA-F4-6856-01 8 142506590 142506590 G - MROH5 5'UTR 0.27 TCGA-F4-6856-01 8 143624775 143624775 G A BAI1 Silent p.S1475S 0.36 TCGA-F4-6856-01 8 144657679 144657679 C - NAPRT1 Frame_Shift_Del p.G402Afs*5 0.30 TCGA-F4-6856-01 8 144668394 144668394 C T EEF1D Missense_Mutation p.A428T 0.22 deleterious(0.02) benign(0.356) TCGA-F4-6856-01 8 144993211 144993211 G A PLEC Missense_Mutation p.S3730L 0.20 probably_damaging(0.998) TCGA-F4-6856-01 8 145580513 145580513 C T FBXL6 Nonsense_Mutation p.W278* 0.28 TCGA-F4-6856-01 8 145738281 145738281 G A RECQL4 Missense_Mutation p.R902W 0.26 deleterious(0) probably_damaging(0.921) TCGA-F4-6856-01 8 17726081 17726083 TCT - FGL1 In_Frame_Del p.E251del 0.45 TCGA-F4-6856-01 8 20005210 20005210 G A SLC18A1 Missense_Mutation p.P412S 0.31 deleterious(0) probably_damaging(0.973) TCGA-F4-6856-01 8 20036900 20036900 C T SLC18A1 Missense_Mutation p.A74T 0.06 tolerated(0.97) benign(0) TCGA-F4-6856-01 8 21861449 21861449 C T XPO7 Silent p.S1026S 0.29 TCGA-F4-6856-01 8 22463333 22463333 G A CCAR2 Missense_Mutation p.R16H 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-F4-6856-01 8 22548102 22548102 G A EGR3 Missense_Mutation p.R350C 0.12 deleterious(0) probably_damaging(0.964) TCGA-F4-6856-01 8 23117792 23117792 C T CHMP7 Missense_Mutation p.A419V 0.27 tolerated(0.21) benign(0.354) TCGA-F4-6856-01 8 23290530 23290530 C T ENTPD4 Missense_Mutation p.R587H 0.40 deleterious(0.03) benign(0.036) TCGA-F4-6856-01 8 23297411 23297412 - T ENTPD4 Frame_Shift_Ins p.N300Kfs*5 0.23 TCGA-F4-6856-01 8 25166411 25166411 G A DOCK5 Missense_Mutation p.A388T 0.17 tolerated(0.31) benign(0.014) TCGA-F4-6856-01 8 25230098 25230098 A G DOCK5 Missense_Mutation p.H1183R 0.11 deleterious(0.03) probably_damaging(0.98) TCGA-F4-6856-01 8 25280756 25280756 G A GNRH1 Missense_Mutation p.R31C 0.28 deleterious(0) probably_damaging(0.994) TCGA-F4-6856-01 8 26366594 26366594 C T PNMA2 5'UTR 0.28 TCGA-F4-6856-01 8 26513184 26513184 C - DPYSL2 Frame_Shift_Del p.G563Vfs*121 0.31 TCGA-F4-6856-01 8 26627705 26627705 G A ADRA1A Intron 0.19 TCGA-F4-6856-01 8 2876120 2876120 C T CSMD1 Silent p.T2636T 0.26 TCGA-F4-6856-01 8 30695128 30695128 G A TEX15 Missense_Mutation p.A2508V 0.28 deleterious(0.04) benign(0.242) TCGA-F4-6856-01 8 33416167 33416167 T C RNF122 Missense_Mutation p.M50V 0.32 tolerated(0.54) benign(0) TCGA-F4-6856-01 8 35584037 35584037 G A UNC5D Missense_Mutation p.M557I 0.33 tolerated(1) benign(0.002) TCGA-F4-6856-01 8 37623245 37623245 A - PROSC Frame_Shift_Del p.A77Hfs*29 0.25 TCGA-F4-6856-01 8 37823494 37823494 G A ADRB3 Missense_Mutation p.S165L 0.37 deleterious(0) possibly_damaging(0.858) TCGA-F4-6856-01 8 3855577 3855577 C T CSMD1 Silent p.P222P 0.43 TCGA-F4-6856-01 8 42045464 42045464 G T PLAT Nonsense_Mutation p.C108* 0.32 TCGA-F4-6856-01 8 48798506 48798506 A G PRKDC Missense_Mutation p.M1591T 0.21 probably_damaging(0.942) TCGA-F4-6856-01 8 55371779 55371779 C T SOX17 Missense_Mutation p.H157Y 0.28 deleterious(0.02) possibly_damaging(0.775) TCGA-F4-6856-01 8 57358364 57358364 G A PENK Intron 0.25 TCGA-F4-6856-01 8 69020466 69020466 T G PREX2 Silent p.S946S 0.25 TCGA-F4-6856-01 8 73958238 73958238 A G TERF1 Missense_Mutation p.R396G 0.27 deleterious(0) possibly_damaging(0.677) TCGA-F4-6856-01 8 74903693 74903693 T - LY96 Frame_Shift_Del p.S8Pfs*45 0.27 TCGA-F4-6856-01 8 75898235 75898235 G A CRISPLD1 Missense_Mutation p.A5T 0.24 tolerated(0.28) benign(0.001) TCGA-F4-6856-01 8 77765467 77765467 G A ZFHX4 Missense_Mutation p.A2104T 0.25 benign(0.001) TCGA-F4-6856-01 8 79598806 79598806 C T ZC2HC1A Silent p.G105G 0.35 TCGA-F4-6856-01 8 8175788 8175788 G A SGK223 Missense_Mutation p.A1366V 0.31 probably_damaging(0.98) TCGA-F4-6856-01 8 86044016 86044017 - T LRRCC1 Frame_Shift_Ins p.T599Yfs*2 0.14 TCGA-F4-6856-01 8 86114461 86114461 A - E2F5 Frame_Shift_Del p.K107Sfs*11 0.31 TCGA-F4-6856-01 8 87683247 87683247 G A CNGB3 Missense_Mutation p.R140C 0.39 deleterious(0.02) benign(0.097) TCGA-F4-6856-01 8 88885686 88885686 G A DCAF4L2 Missense_Mutation p.R172C 0.17 deleterious(0.04) benign(0) TCGA-F4-6856-01 8 92136764 92136764 C T LRRC69 Missense_Mutation p.P76L 0.33 deleterious(0) probably_damaging(0.996) TCGA-F4-6856-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.26 TCGA-F4-6856-01 8 94713617 94713617 G A FAM92A1 Silent p.P64P 0.26 TCGA-F4-6856-01 8 95539124 95539124 C T KIAA1429 Missense_Mutation p.A450T 0.27 deleterious(0) probably_damaging(0.999) TCGA-F4-6856-01 8 98289745 98289745 C T TSPYL5 Missense_Mutation p.A110T 0.33 tolerated(0.73) benign(0.001) TCGA-F4-6856-01 8 99105498 99105498 T C C8orf47 Silent p.S354S 0.17 TCGA-F4-6856-01 9 100090411 100090411 C T CCDC180 Missense_Mutation p.R635C 0.20 deleterious(0.03) benign(0.03) TCGA-F4-6856-01 9 100128910 100128910 G A CCDC180 Missense_Mutation p.A1417T 0.23 tolerated(0.06) possibly_damaging(0.695) TCGA-F4-6856-01 9 100353693 100353693 G A TMOD1 Missense_Mutation p.A331T 0.46 deleterious(0.03) possibly_damaging(0.74) TCGA-F4-6856-01 9 100672324 100672324 C A C9orf156 Missense_Mutation p.W328C 0.38 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 9 100887034 100887034 T C CORO2A 3'UTR 0.29 TCGA-F4-6856-01 9 100961596 100961596 G A TBC1D2 3'UTR 0.19 TCGA-F4-6856-01 9 103055045 103055045 A G INVS Missense_Mutation p.T836A 0.21 tolerated_low_confidence(0.66) benign(0.005) TCGA-F4-6856-01 9 107513235 107513235 A C NIPSNAP3A Splice_Site p.X21_splice 0.28 TCGA-F4-6856-01 9 107528697 107528697 C T NIPSNAP3B Missense_Mutation p.A51V 0.24 deleterious(0.03) benign(0.009) TCGA-F4-6856-01 9 110248186 110248186 T A KLF4 Missense_Mutation p.D429V 0.35 deleterious(0) probably_damaging(0.917) TCGA-F4-6856-01 9 110251299 110251299 C T KLF4 Missense_Mutation p.S13N 0.16 tolerated(0.11) probably_damaging(0.916) TCGA-F4-6856-01 9 114176903 114176903 G A KIAA0368 Missense_Mutation p.A776V 0.14 tolerated(0.25) possibly_damaging(0.509) TCGA-F4-6856-01 9 115232836 115232836 A T HSDL2 3'UTR 0.21 TCGA-F4-6856-01 9 116346362 116346362 G - RGS3 Frame_Shift_Del p.E892Rfs*27 0.28 TCGA-F4-6856-01 9 119463093 119463093 C T TRIM32 3'UTR 0.22 TCGA-F4-6856-01 9 127911944 127911944 C T PPP6C 3'UTR 0.34 TCGA-F4-6856-01 9 130478397 130478397 G A PTRH1 5'UTR 0.11 TCGA-F4-6856-01 9 130630638 130630638 C T AK1 Missense_Mutation p.V160I 0.31 tolerated(0.25) probably_damaging(0.999) TCGA-F4-6856-01 9 131196731 131196731 C A CERCAM Silent p.A458A 0.34 TCGA-F4-6856-01 9 131353828 131353828 G A SPTAN1 Missense_Mutation p.A1027T 0.08 tolerated(0.53) benign(0.013) TCGA-F4-6856-01 9 131395553 131395553 C T SPTAN1 Silent p.G2458G 0.37 TCGA-F4-6856-01 9 131768940 131768940 C T NUP188 Missense_Mutation p.R1745W 0.32 deleterious_low_confidence(0) possibly_damaging(0.667) TCGA-F4-6856-01 9 133306830 133306830 C - HMCN2 Frame_Shift_Del p.A620Pfs*182 0.33 TCGA-F4-6856-01 9 133364737 133364737 G A ASS1 Missense_Mutation p.A286T 0.34 deleterious(0) probably_damaging(0.94) TCGA-F4-6856-01 9 133506176 133506176 G A FUBP3 Splice_Site p.X426_splice 0.40 TCGA-F4-6856-01 9 137320990 137320990 G A RXRA Missense_Mutation p.R316H 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-F4-6856-01 9 137697026 137697026 G A COL5A1 Missense_Mutation p.G1075D 0.36 unknown(0) TCGA-F4-6856-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.25 TCGA-F4-6856-01 9 138379923 138379923 C T PPP1R26 Silent p.D1189D 0.13 TCGA-F4-6856-01 9 139410092 139410092 G A NOTCH1 Silent p.D582D 0.12 TCGA-F4-6856-01 9 139836692 139836692 C T FBXW5 Missense_Mutation p.G301D 0.36 tolerated(0.14) benign(0.284) TCGA-F4-6856-01 9 139972823 139972823 C G UAP1L1 Intron 0.44 TCGA-F4-6856-01 9 18657640 18657640 C T ADAMTSL1 Missense_Mutation p.R280C 0.21 deleterious(0) possibly_damaging(0.556) TCGA-F4-6856-01 9 22008920 22008920 C T CDKN2B Silent p.G11G 0.28 TCGA-F4-6856-01 9 2718338 2718338 G A KCNV2 Missense_Mutation p.R200H 0.26 deleterious(0.03) benign(0.137) TCGA-F4-6856-01 9 32424622 32424622 T C ACO1 Missense_Mutation p.S383P 0.25 deleterious(0.04) benign(0.183) TCGA-F4-6856-01 9 32434572 32434572 C - ACO1 Frame_Shift_Del p.P659Lfs*4 0.17 TCGA-F4-6856-01 9 34618749 34618749 G A DCTN3 Silent p.D35D 0.24 TCGA-F4-6856-01 9 35801923 35801923 C T NPR2 Missense_Mutation p.R520W 0.32 deleterious(0) probably_damaging(0.998) TCGA-F4-6856-01 9 37356924 37356924 C T ZCCHC7 Missense_Mutation p.R431C 0.26 tolerated(0.19) benign(0.003) TCGA-F4-6856-01 9 4544613 4544613 T C SLC1A1 Silent p.T46T 0.26 TCGA-F4-6856-01 9 6014244 6014244 A G RANBP6 Missense_Mutation p.L455S 0.28 deleterious(0) probably_damaging(0.987) TCGA-F4-6856-01 9 70177749 70177749 C T FOXD4L5 Missense_Mutation p.G79S 0.18 tolerated_low_confidence(0.43) probably_damaging(0.987) TCGA-F4-6856-01 9 711132 711133 - C KANK1 Frame_Shift_Ins p.L125Sfs*27 0.31 TCGA-F4-6856-01 9 79267572 79267572 T C PRUNE2 Missense_Mutation p.D2795G 0.25 tolerated(1) benign(0) TCGA-F4-6856-01 9 8528612 8528612 G A PTPRD Missense_Mutation p.R174C 0.40 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 9 90318122 90318122 G A DAPK1 Missense_Mutation p.S1017N 0.29 tolerated(0.19) possibly_damaging(0.897) TCGA-F4-6856-01 9 92017870 92017870 G A SEMA4D Silent p.S56S 0.21 TCGA-F4-6856-01 9 94487223 94487223 C A ROR2 Missense_Mutation p.R518L 0.19 tolerated(0.35) benign(0.116) TCGA-F4-6856-01 9 95491493 95491493 T C BICD2 Missense_Mutation p.H89R 0.35 deleterious(0) possibly_damaging(0.69) TCGA-F4-6856-01 9 96060260 96060260 G A WNK2 Missense_Mutation p.R1982H 0.32 unknown(0) TCGA-F4-6856-01 9 97062172 97062172 C T ZNF169 Missense_Mutation p.A111V 0.19 tolerated(1) benign(0.001) TCGA-F4-6856-01 X 10176320 10176320 G A CLCN4 Missense_Mutation p.R360H 0.46 deleterious(0) probably_damaging(0.993) TCGA-F4-6856-01 X 103349039 103349039 C A SLC25A53 Missense_Mutation p.R301M 0.59 deleterious_low_confidence(0.02) possibly_damaging(0.714) TCGA-F4-6856-01 X 109561079 109561080 - G AMMECR1 Frame_Shift_Ins p.Q74Pfs*125 0.38 TCGA-F4-6856-01 X 111003248 111003248 T G ALG13 3'UTR 0.61 TCGA-F4-6856-01 X 115576094 115576094 C T SLC6A14 Missense_Mutation p.A222V 0.11 tolerated(1) benign(0.052) TCGA-F4-6856-01 X 122551436 122551436 G A GRIA3 Missense_Mutation p.A562T 0.57 deleterious(0) benign(0.401) TCGA-F4-6856-01 X 12725011 12725011 C T FRMPD4 Missense_Mutation p.R422C 0.63 deleterious(0.01) probably_damaging(0.992) TCGA-F4-6856-01 X 129171493 129171493 C T BCORL1 Missense_Mutation p.A1486V 0.11 probably_damaging(0.969) TCGA-F4-6856-01 X 129629119 129629119 C T RP1-274L7.1 RNA 0.62 TCGA-F4-6856-01 X 130417005 130417005 C T IGSF1 Missense_Mutation p.A301T 0.12 tolerated(0.43) benign(0.126) TCGA-F4-6856-01 X 130417075 130417076 - T IGSF1 Frame_Shift_Ins p.N277Kfs*2 0.36 TCGA-F4-6856-01 X 132670213 132670213 G A GPC3 Missense_Mutation p.P584L 0.60 tolerated_low_confidence(0.16) benign(0.008) TCGA-F4-6856-01 X 134030865 134030866 - A MOSPD1 Frame_Shift_Ins p.E144* 0.38 TCGA-F4-6856-01 X 138698572 138698572 G A MCF2 Nonsense_Mutation p.Q414* 0.07 TCGA-F4-6856-01 X 14862792 14862792 G A FANCB Silent p.G666G 0.57 TCGA-F4-6856-01 X 153217363 153217363 C T HCFC1 Missense_Mutation p.S1730N 0.63 deleterious_low_confidence(0.04) benign(0.011) TCGA-F4-6856-01 X 15333660 15333660 A - ASB11 Frame_Shift_Del p.F23Sfs*5 0.51 TCGA-F4-6856-01 X 153676898 153676898 G A FAM50A Missense_Mutation p.R170Q 0.17 deleterious(0.01) possibly_damaging(0.812) TCGA-F4-6856-01 X 1551236 1551236 G A ASMTL Silent p.Y145Y 0.10 TCGA-F4-6856-01 X 155239749 155239749 C - IL9R Frame_Shift_Del p.T416Rfs*3 0.28 TCGA-F4-6856-01 X 27765898 27765898 C A DCAF8L2 Missense_Mutation p.Q296K 0.65 deleterious(0.02) possibly_damaging(0.794) TCGA-F4-6856-01 X 2947332 2947332 C T ARSH Missense_Mutation p.A415V 0.15 tolerated(0.98) benign(0.004) TCGA-F4-6856-01 X 2990119 2990119 G A ARSF Missense_Mutation p.A22T 0.63 tolerated(0.39) benign(0.016) TCGA-F4-6856-01 X 3235301 3235301 G A MXRA5 Missense_Mutation p.R2141C 0.28 deleterious(0) probably_damaging(0.95) TCGA-F4-6856-01 X 36122632 36122632 G A CHDC2 Missense_Mutation p.R290H 0.53 deleterious(0.03) probably_damaging(0.988) TCGA-F4-6856-01 X 38280417 38280417 A - OTC 3'UTR 0.36 TCGA-F4-6856-01 X 41089035 41089035 A - USP9X Frame_Shift_Del p.A2481Pfs*7 0.20 TCGA-F4-6856-01 X 47002069 47002069 G A NDUFB11 Silent p.G94G 0.53 TCGA-F4-6856-01 X 47082982 47082982 G A CDK16 Missense_Mutation p.R83Q 0.57 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-F4-6856-01 X 49646534 49646534 G - USP27X 3'UTR 0.36 TCGA-F4-6856-01 X 50053544 50053544 C T CCNB3 Missense_Mutation p.A792V 0.69 tolerated(0.28) benign(0) TCGA-F4-6856-01 X 53265599 53265599 G A IQSEC2 Missense_Mutation p.T1119M 0.59 deleterious(0) probably_damaging(0.988) TCGA-F4-6856-01 X 53560211 53560211 C - HUWE1 3'UTR 0.41 TCGA-F4-6856-01 X 54337724 54337724 C T WNK3 Missense_Mutation p.D180N 0.21 deleterious(0) probably_damaging(0.997) TCGA-F4-6856-01 X 54950035 54950035 C T TRO Missense_Mutation p.T357I 0.20 tolerated(0.08) unknown(0) TCGA-F4-6856-01 X 65480011 65480011 G A HEPH Missense_Mutation p.A1090T 0.67 tolerated(0.11) benign(0.047) TCGA-F4-6856-01 X 68382315 68382315 A T PJA1 Missense_Mutation p.V256D 0.61 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 X 69282886 69282886 G A OTUD6A Missense_Mutation p.R171H 0.61 deleterious(0) probably_damaging(1) TCGA-F4-6856-01 X 70367695 70367695 G A NLGN3 Silent p.A32A 0.56 TCGA-F4-6856-01 X 71350456 71350456 C T RGAG4 Missense_Mutation p.R312H 0.34 tolerated(0.07) probably_damaging(0.959) TCGA-F4-6856-01 X 73524139 73524139 G A ZCCHC13 Missense_Mutation p.G13D 0.53 tolerated(0.05) probably_damaging(1) TCGA-F4-6856-01 X 74295431 74295431 G A ABCB7 Silent p.N208N 0.51 TCGA-F4-6856-01 X 91134027 91134027 C A PCDH11X Missense_Mutation p.P930T 0.58 deleterious(0.01) probably_damaging(0.976) TCGA-F4-6856-01 X 96212916 96212916 G A DIAPH2 Silent p.A568A 0.70 TCGA-F4-6856-01 X 99663218 99663218 C T PCDH19 Silent p.A126A 0.21 TCGA-G4-6293-01 10 114711367 114711368 - T TCF7L2 Splice_Site p.X127_splice 0.34 TCGA-G4-6293-01 10 13251454 13251454 C T MCM10 3'UTR 0.23 TCGA-G4-6293-01 10 49968432 49968432 G A WDFY4 Missense_Mutation p.V834M 0.34 tolerated(0.24) possibly_damaging(0.609) TCGA-G4-6293-01 10 93590902 93590902 T C TNKS2 Silent p.N413N 0.30 TCGA-G4-6293-01 11 1031246 1031246 C T MUC6 Missense_Mutation p.R166Q 0.35 unknown(0) TCGA-G4-6293-01 11 108163425 108163425 G A ATM Missense_Mutation p.V1506M 0.20 tolerated(0.08) possibly_damaging(0.488) TCGA-G4-6293-01 11 10875824 10875825 TT - ZBED5 Frame_Shift_Del p.K223Rfs*8 0.20 TCGA-G4-6293-01 11 6662583 6662583 C T DCHS1 Missense_Mutation p.V88M 0.28 deleterious(0) probably_damaging(0.971) TCGA-G4-6293-01 11 69625141 69625141 C T FGF3 Missense_Mutation p.D218N 0.13 tolerated_low_confidence(0.44) benign(0.015) TCGA-G4-6293-01 11 7949802 7949802 C A OR10A6 Missense_Mutation p.M136I 0.31 deleterious(0.01) possibly_damaging(0.742) TCGA-G4-6293-01 11 7984823 7984823 C A NLRP10 Missense_Mutation p.V74F 0.27 deleterious(0) probably_damaging(0.94) TCGA-G4-6293-01 12 122353845 122353845 G A PSMD9 Silent p.L213L 0.56 TCGA-G4-6293-01 12 12247684 12247684 G A BCL2L14 Missense_Mutation p.M255I 0.25 deleterious(0.03) benign(0.131) TCGA-G4-6293-01 12 53876136 53876136 C T MAP3K12 Silent p.S752S 0.57 TCGA-G4-6293-01 12 6618894 6618894 G A NCAPD2 Missense_Mutation p.A47T 0.32 tolerated(0.05) benign(0.078) TCGA-G4-6293-01 13 103718243 103718243 G A SLC10A2 Silent p.V119V 0.13 TCGA-G4-6293-01 13 60548579 60548579 C G DIAPH3 Missense_Mutation p.E519D 0.17 deleterious(0.03) probably_damaging(0.989) TCGA-G4-6293-01 13 67800426 67800426 G T PCDH9 Missense_Mutation p.T716N 0.19 deleterious(0.05) benign(0.058) TCGA-G4-6293-01 14 100317231 100317231 C T EML1 Missense_Mutation p.R37C 0.31 deleterious(0) probably_damaging(0.999) TCGA-G4-6293-01 14 101347412 101347412 G A RTL1 Silent p.D1238D 0.31 TCGA-G4-6293-01 14 102910034 102910034 T A TECPR2 Missense_Mutation p.Y935N 0.28 tolerated(0.23) benign(0.392) TCGA-G4-6293-01 14 104618708 104618708 G A KIF26A Silent p.A215A 0.38 TCGA-G4-6293-01 14 21558835 21558835 G A ZNF219 Missense_Mutation p.R677W 0.39 deleterious(0) probably_damaging(0.988) TCGA-G4-6293-01 14 75574174 75574174 G A NEK9 Missense_Mutation p.T400I 0.27 deleterious(0.03) possibly_damaging(0.521) TCGA-G4-6293-01 14 78174432 78174432 C G SLIRP 5'UTR 0.28 TCGA-G4-6293-01 15 28326974 28326974 G A OCA2 Missense_Mutation p.A16V 0.34 tolerated_low_confidence(0.19) benign(0.033) TCGA-G4-6293-01 15 37184179 37184179 T C MEIS2 3'UTR 0.33 TCGA-G4-6293-01 15 42104313 42104313 G A MAPKBP1 Silent p.V162V 0.26 TCGA-G4-6293-01 15 51791933 51791933 G A DMXL2 Missense_Mutation p.P1163L 0.25 tolerated(0.11) possibly_damaging(0.696) TCGA-G4-6293-01 15 53049699 53049699 A T ONECUT1 3'UTR 0.35 TCGA-G4-6293-01 15 63862705 63862705 G A USP3 Missense_Mutation p.G279S 0.28 tolerated(0.88) benign(0.036) TCGA-G4-6293-01 15 72502026 72502026 C T PKM Missense_Mutation p.V185M 0.25 deleterious(0) probably_damaging(0.995) TCGA-G4-6293-01 15 75705232 75705232 G A SIN3A Nonsense_Mutation p.Q210* 0.33 TCGA-G4-6293-01 15 80465464 80465464 T C FAH Missense_Mutation p.F272S 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6293-01 15 91020903 91020903 G A IQGAP1 Silent p.K1037K 0.31 TCGA-G4-6293-01 15 93486197 93486197 C A CHD2 Silent p.I317I 0.30 TCGA-G4-6293-01 16 19884111 19884111 C A GPRC5B Silent p.L19L 0.24 TCGA-G4-6293-01 16 34712434 34712434 G T RP11-80F22.9 RNA 0.40 TCGA-G4-6293-01 16 66947047 66947047 C G CDH16 Missense_Mutation p.E347D 0.31 deleterious(0.01) probably_damaging(1) TCGA-G4-6293-01 17 1516557 1516557 C T SLC43A2 Missense_Mutation p.V145M 0.34 tolerated(0.29) possibly_damaging(0.569) TCGA-G4-6293-01 17 27943782 27943782 C T CORO6 Silent p.P314P 0.30 TCGA-G4-6293-01 17 33769033 33769033 C T SLFN13 Missense_Mutation p.A491T 0.17 deleterious(0) probably_damaging(0.939) TCGA-G4-6293-01 17 38938746 38938746 G A KRT27 5'UTR 0.31 TCGA-G4-6293-01 17 39240626 39240626 G C KRTAP4-7 Missense_Mutation p.Q56H 0.32 tolerated(0.06) unknown(0) TCGA-G4-6293-01 17 48539856 48539856 G A ACSF2 Silent p.A234A 0.21 TCGA-G4-6293-01 17 59947232 59947232 C T INTS2 Missense_Mutation p.A974T 0.26 tolerated(0.58) benign(0.001) TCGA-G4-6293-01 17 70117761 70117761 G T SOX9 Missense_Mutation p.V77F 0.28 deleterious(0) probably_damaging(0.999) TCGA-G4-6293-01 17 70118924 70118926 AAG - SOX9 In_Frame_Del p.K167del 0.32 TCGA-G4-6293-01 17 71239086 71239086 C T C17orf80 Missense_Mutation p.T558M 0.26 deleterious(0) probably_damaging(0.996) TCGA-G4-6293-01 17 7328958 7328958 G A C17orf74 5'UTR 0.29 TCGA-G4-6293-01 17 73774969 73774969 G A H3F3B Silent p.F68F 0.21 TCGA-G4-6293-01 17 77086915 77086916 - T RBFOX3 3'UTR 0.18 TCGA-G4-6293-01 18 19762791 19762792 - A GATA6 Frame_Shift_Ins p.T503Dfs*5 0.20 TCGA-G4-6293-01 18 30873198 30873200 CTC - CCDC178 In_Frame_Del p.E367del 0.24 TCGA-G4-6293-01 19 15297971 15297971 G A NOTCH3 Silent p.G595G 0.30 TCGA-G4-6293-01 19 17758148 17758148 G A UNC13A Missense_Mutation p.T657M 0.36 tolerated(0.07) benign(0.386) TCGA-G4-6293-01 19 20044861 20044861 A C ZNF93 Missense_Mutation p.K366T 0.28 deleterious(0.01) benign(0.12) TCGA-G4-6293-01 19 20808099 20808099 T C ZNF626 Missense_Mutation p.H195R 0.29 deleterious(0) probably_damaging(0.96) TCGA-G4-6293-01 19 36278931 36278931 C T ARHGAP33 Missense_Mutation p.P994L 0.35 tolerated_low_confidence(0.17) benign(0.175) TCGA-G4-6293-01 19 3964300 3964300 C T DAPK3 Silent p.A165A 0.30 TCGA-G4-6293-01 19 44351706 44351706 C T ZNF283 Missense_Mutation p.S318F 0.35 deleterious(0) probably_damaging(0.947) TCGA-G4-6293-01 19 51192566 51192566 T G SHANK1 Intron 0.25 TCGA-G4-6293-01 19 6472940 6472940 G A DENND1C Missense_Mutation p.A373V 0.30 tolerated(0.09) benign(0.363) TCGA-G4-6293-01 1 113238838 113238838 C A MOV10 Nonsense_Mutation p.Y616* 0.32 TCGA-G4-6293-01 1 1375994 1375994 C T VWA1 3'UTR 0.31 TCGA-G4-6293-01 1 152084579 152084579 T C TCHH Missense_Mutation p.R372G 0.09 unknown(0) TCGA-G4-6293-01 1 152280426 152280426 A G FLG Silent p.G2312G 0.28 TCGA-G4-6293-01 1 154471628 154471628 G A SHE Silent p.D226D 0.30 TCGA-G4-6293-01 1 15616118 15616118 C T FHAD1 Missense_Mutation p.S175L 0.28 deleterious(0) probably_damaging(0.982) TCGA-G4-6293-01 1 160000943 160000943 G A PIGM Missense_Mutation p.P196L 0.29 tolerated(0.13) benign(0.173) TCGA-G4-6293-01 1 160125861 160125861 C T ATP1A4 Silent p.V146V 0.33 TCGA-G4-6293-01 1 167802283 167802283 C T ADCY10 Missense_Mutation p.E1179K 0.23 deleterious(0) probably_damaging(0.999) TCGA-G4-6293-01 1 175375556 175375556 C T TNR Missense_Mutation p.A99T 0.29 tolerated(0.8) benign(0.001) TCGA-G4-6293-01 1 201981118 201981119 - C ELF3 Frame_Shift_Ins p.W67Lfs*25 0.29 TCGA-G4-6293-01 1 21771522 21771522 G A NBPF3 5'UTR 0.30 TCGA-G4-6293-01 1 237765331 237765331 C T RYR2 Missense_Mutation p.P1535S 0.30 probably_damaging(0.974) TCGA-G4-6293-01 1 27089562 27089562 C T ARID1A Nonsense_Mutation p.Q840* 0.30 TCGA-G4-6293-01 1 32842128 32842128 C T BSDC1 Silent p.E314E 0.32 TCGA-G4-6293-01 1 38227709 38227709 G A EPHA10 Missense_Mutation p.T73M 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6293-01 1 70504985 70504985 G A LRRC7 Missense_Mutation p.A1122T 0.37 tolerated(0.07) benign(0.035) TCGA-G4-6293-01 1 93730216 93730217 - T CCDC18 Intron 0.26 TCGA-G4-6293-01 20 10386093 10386093 C T MKKS Silent p.Q505Q 0.20 TCGA-G4-6293-01 20 25459758 25459758 C T NINL Missense_Mutation p.E668K 0.32 deleterious(0) possibly_damaging(0.735) TCGA-G4-6293-01 20 33581963 33581963 C T MYH7B Missense_Mutation p.T862I 0.43 benign(0.009) TCGA-G4-6293-01 20 34092303 34092303 G A CEP250 Missense_Mutation p.D2036N 0.43 benign(0.139) TCGA-G4-6293-01 20 34528934 34528934 C T PHF20 Missense_Mutation p.T954M 0.18 deleterious(0) probably_damaging(0.941) TCGA-G4-6293-01 20 36662398 36662398 A T RPRD1B Missense_Mutation p.S17C 0.25 deleterious(0) probably_damaging(0.957) TCGA-G4-6293-01 20 44699150 44699150 G A NCOA5 Nonsense_Mutation p.R22* 0.42 TCGA-G4-6293-01 21 31587637 31587637 G A CLDN8 Missense_Mutation p.R203C 0.27 tolerated(0.14) possibly_damaging(0.634) TCGA-G4-6293-01 21 31864073 31864073 C T KRTAP19-3 Missense_Mutation p.R68H 0.30 tolerated_low_confidence(0.39) unknown(0) TCGA-G4-6293-01 21 41032636 41032636 A C B3GALT5 Silent p.T50T 0.29 TCGA-G4-6293-01 21 47977574 47977574 G A DIP2A Missense_Mutation p.V1236I 0.24 tolerated(0.12) benign(0.056) TCGA-G4-6293-01 22 30639735 30639735 T A LIF Missense_Mutation p.T172S 0.31 tolerated(0.58) benign(0.014) TCGA-G4-6293-01 22 44583707 44583707 C T PARVG Missense_Mutation p.R66C 0.21 deleterious(0) probably_damaging(0.995) TCGA-G4-6293-01 2 101009634 101009634 A G CHST10 3'UTR 0.24 TCGA-G4-6293-01 2 107459863 107459863 C T ST6GAL2 Missense_Mutation p.D191N 0.22 benign(0.01) TCGA-G4-6293-01 2 130949493 130949493 G A TUBA3E Missense_Mutation p.R422C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6293-01 2 162711575 162711575 G T SLC4A10 Missense_Mutation p.R171I 0.24 deleterious(0) possibly_damaging(0.819) TCGA-G4-6293-01 2 179408774 179408774 G A TTN Missense_Mutation p.R32033C 0.27 TCGA-G4-6293-01 2 231264878 231264878 G A SP140L Missense_Mutation p.G412R 0.27 tolerated(0.39) benign(0.345) TCGA-G4-6293-01 2 56103831 56103831 G A EFEMP1 Silent p.Y269Y 0.24 TCGA-G4-6293-01 2 99651822 99651822 C A TSGA10 Missense_Mutation p.Q495H 0.31 deleterious(0.04) benign(0.04) TCGA-G4-6293-01 3 113342547 113342547 A G SIDT1 Silent p.L758L 0.23 TCGA-G4-6293-01 3 122447466 122447466 A C PARP14 3'UTR 0.28 TCGA-G4-6293-01 3 124157818 124157818 A G KALRN Silent p.A1042A 0.27 TCGA-G4-6293-01 3 125786899 125786899 G T SLC41A3 Missense_Mutation p.T55N 0.25 tolerated(0.49) benign(0.074) TCGA-G4-6293-01 3 126158558 126158558 C T ZXDC Missense_Mutation p.G803S 0.34 tolerated(0.24) benign(0.052) TCGA-G4-6293-01 3 133653614 133653614 G A SLCO2A1 Silent p.S625S 0.31 TCGA-G4-6293-01 3 15301450 15301450 A G SH3BP5 Intron 0.29 TCGA-G4-6293-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.31 deleterious(0.04) probably_damaging(0.96) TCGA-G4-6293-01 3 7621013 7621014 TT - GRM7 Frame_Shift_Del p.F809Wfs*44 0.27 TCGA-G4-6293-01 3 9821932 9821932 C T TADA3 3'UTR 0.23 TCGA-G4-6293-01 4 146791554 146791554 C A ZNF827 Silent p.T608T 0.26 TCGA-G4-6293-01 4 148550830 148550830 A G TMEM184C Missense_Mutation p.N218S 0.25 deleterious(0.04) benign(0.262) TCGA-G4-6293-01 4 153247367 153247367 G C FBXW7 Missense_Mutation p.R479G 0.24 deleterious(0) probably_damaging(1) TCGA-G4-6293-01 4 177081145 177081145 G A WDR17 Silent p.R866R 0.33 TCGA-G4-6293-01 4 73169736 73169736 C T ADAMTS3 Silent p.S774S 0.26 TCGA-G4-6293-01 4 98893490 98893490 G A STPG2 Missense_Mutation p.R292W 0.25 deleterious(0) probably_damaging(0.998) TCGA-G4-6293-01 4 99823101 99823101 T C EIF4E Silent p.T17T 0.30 TCGA-G4-6293-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.25 TCGA-G4-6293-01 5 112175756 112175756 T - APC Frame_Shift_Del p.L1489Yfs*18 0.20 TCGA-G4-6293-01 5 112177029 112177029 T C APC Missense_Mutation p.I1913T 0.30 benign(0) TCGA-G4-6293-01 5 140627173 140627173 C T PCDHB15 Missense_Mutation p.A676V 0.35 tolerated_low_confidence(1) benign(0.011) TCGA-G4-6293-01 5 150911530 150911530 G A FAT2 Silent p.G3143G 0.37 TCGA-G4-6293-01 5 26881459 26881459 C A CDH9 Missense_Mutation p.R719I 0.28 deleterious(0) possibly_damaging(0.828) TCGA-G4-6293-01 5 76330320 76330320 G A AGGF1 Silent p.E96E 0.35 TCGA-G4-6293-01 5 9337838 9337838 C T SEMA5A Missense_Mutation p.V71I 0.29 tolerated(1) benign(0.009) TCGA-G4-6293-01 6 130460836 130460836 A C L3MBTL3 Missense_Mutation p.K761Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-G4-6293-01 6 159660854 159660854 C T FNDC1 Missense_Mutation p.R1496W 0.30 deleterious_low_confidence(0.01) benign(0.03) TCGA-G4-6293-01 6 31556988 31556988 C T NCR3 Intron 0.35 TCGA-G4-6293-01 6 31612849 31612849 C T BAG6 Missense_Mutation p.E421K 0.36 tolerated(0.24) benign(0.165) TCGA-G4-6293-01 6 32056606 32056606 C T TNXB Missense_Mutation p.R912Q 0.26 probably_damaging(0.975) TCGA-G4-6293-01 6 43018836 43018836 G A CUL7 Missense_Mutation p.T452I 0.31 tolerated(0.05) possibly_damaging(0.747) TCGA-G4-6293-01 6 90503907 90503907 C A MDN1 Missense_Mutation p.A192S 0.26 benign(0.031) TCGA-G4-6293-01 7 100239100 100239100 C T TFR2 Silent p.A11A 0.40 TCGA-G4-6293-01 7 136700356 136700356 G T CHRM2 Missense_Mutation p.M248I 0.44 tolerated(0.38) benign(0) TCGA-G4-6293-01 7 155532685 155532685 C T RBM33 Missense_Mutation p.R672W 0.49 deleterious(0) unknown(0) TCGA-G4-6293-01 7 42958787 42958788 - A PSMA2 Intron 0.19 TCGA-G4-6293-01 7 6777420 6777420 C T PMS2CL RNA 0.18 TCGA-G4-6293-01 7 75959098 75959098 G A YWHAG Silent p.S180S 0.46 TCGA-G4-6293-01 8 107719426 107719426 G A OXR1 Intron 0.37 TCGA-G4-6293-01 8 116632040 116632040 C A TRPS1 Missense_Mutation p.E95D 0.28 tolerated_low_confidence(0.06) probably_damaging(0.994) TCGA-G4-6293-01 8 87235306 87235306 T C SLC7A13 Missense_Mutation p.I238V 0.30 deleterious(0.04) possibly_damaging(0.883) TCGA-G4-6293-01 8 90993049 90993049 A G NBN Silent p.A131A 0.26 TCGA-G4-6293-01 8 98078366 98078366 C T CPQ Missense_Mutation p.L395F 0.25 tolerated(0.09) benign(0.082) TCGA-G4-6293-01 9 116840441 116840441 C - AMBP Frame_Shift_Del p.V17* 0.23 TCGA-G4-6293-01 9 123165260 123165260 G A CDK5RAP2 Missense_Mutation p.R1711C 0.24 tolerated(0.16) possibly_damaging(0.483) TCGA-G4-6293-01 9 133769100 133769100 G A QRFP Silent p.D42D 0.28 TCGA-G4-6293-01 9 2084129 2084129 G A SMARCA2 Missense_Mutation p.S820N 0.31 possibly_damaging(0.517) TCGA-G4-6293-01 9 21142102 21142102 C A IFNW1 5'UTR 0.27 TCGA-G4-6293-01 X 118724539 118724539 G C NKRF Silent p.V298V 0.28 TCGA-G4-6293-01 X 135429123 135429123 T A GPR112 Silent p.R1086R 0.30 TCGA-G4-6293-01 X 150844561 150844561 G A PASD1 Silent p.A756A 0.30 TCGA-G4-6293-01 X 3228228 3228228 C T MXRA5 Silent p.T2672T 0.31 TCGA-G4-6293-01 X 34150304 34150304 G A FAM47A Missense_Mutation p.A31V 0.34 deleterious(0.01) benign(0.063) TCGA-G4-6293-01 X 37587071 37587071 T C XK Missense_Mutation p.S231P 0.28 deleterious(0) probably_damaging(0.995) TCGA-G4-6293-01 X 38664828 38664828 T A MID1IP1 3'UTR 0.31 TCGA-G4-6293-01 X 47101092 47101092 G A USP11 Silent p.P434P 0.30 TCGA-G4-6293-01 X 48681849 48681849 G A HDAC6 Missense_Mutation p.G1014R 0.35 tolerated(0.39) benign(0.007) TCGA-G4-6293-01 X 49854898 49854898 C T CLCN5 Missense_Mutation p.R624W 0.26 deleterious(0) probably_damaging(0.997) TCGA-G4-6293-01 X 53230786 53230788 CTC - KDM5C In_Frame_Del p.E669del 0.25 TCGA-G4-6293-01 X 53240685 53240685 T A KDM5C Missense_Mutation p.E465D 0.26 tolerated(0.25) benign(0.403) TCGA-G4-6293-01 X 54955077 54955077 C T TRO Silent p.R640R 0.32 TCGA-G4-6293-01 X 66765795 66765795 C T AR Silent p.Y269Y 0.26 TCGA-G4-6293-01 X 75650543 75650543 G C MAGEE1 Missense_Mutation p.W740C 0.04 deleterious(0) probably_damaging(0.995) TCGA-G4-6293-01 X 88009686 88009686 G A CPXCR1 3'UTR 0.23 TCGA-G4-6294-01 10 101090080 101090080 C T CNNM1 Silent p.T312T 0.43 TCGA-G4-6294-01 10 15255067 15255067 C T FAM171A1 Silent p.A840A 0.38 TCGA-G4-6294-01 10 15590516 15590516 C T ITGA8 Missense_Mutation p.E940K 0.43 deleterious(0.02) benign(0.102) TCGA-G4-6294-01 10 72358147 72358147 C A PRF1 Missense_Mutation p.G444C 0.53 deleterious(0.01) probably_damaging(0.959) TCGA-G4-6294-01 10 7242406 7242406 G T SFMBT2 Missense_Mutation p.L510I 0.44 tolerated(0.42) benign(0.114) TCGA-G4-6294-01 10 88912046 88912046 T - FAM35A Frame_Shift_Del p.F313Lfs*15 0.19 TCGA-G4-6294-01 10 98303738 98303738 C G TM9SF3 Intron 0.40 TCGA-G4-6294-01 11 26692543 26692543 C A SLC5A12 3'UTR 0.47 TCGA-G4-6294-01 11 5009489 5009489 C T MMP26 Silent p.F16F 0.41 TCGA-G4-6294-01 11 56344421 56344421 G A OR5M10 Silent p.Y259Y 0.41 TCGA-G4-6294-01 11 62529276 62529276 G T POLR2G Nonsense_Mutation p.E8* 0.41 TCGA-G4-6294-01 11 76731355 76731355 C G ACER3 Missense_Mutation p.P263R 0.32 deleterious_low_confidence(0) benign(0.009) TCGA-G4-6294-01 12 126068418 126068418 G A TMEM132B Missense_Mutation p.A434T 0.84 deleterious(0) probably_damaging(0.946) TCGA-G4-6294-01 12 130184635 130184635 C T TMEM132D Missense_Mutation p.V230M 0.46 tolerated(0.08) benign(0.202) TCGA-G4-6294-01 12 18435056 18435056 C G PIK3C2G Nonsense_Mutation p.S14* 0.38 TCGA-G4-6294-01 12 19440457 19440457 G C PLEKHA5 Missense_Mutation p.Q610H 0.34 tolerated(0.09) possibly_damaging(0.832) TCGA-G4-6294-01 12 20523063 20523063 A T PDE3A Missense_Mutation p.D282V 0.40 deleterious(0.01) benign(0.147) TCGA-G4-6294-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.86 deleterious(0.03) possibly_damaging(0.644) TCGA-G4-6294-01 12 52450906 52450906 C G NR4A1 Missense_Mutation p.D421E 0.48 tolerated(0.09) benign(0.003) TCGA-G4-6294-01 12 52450917 52450917 G T NR4A1 Missense_Mutation p.G425V 0.47 tolerated(0.08) benign(0.008) TCGA-G4-6294-01 12 57922152 57922189 GGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACT - MBD6 Frame_Shift_Del p.R878Pfs*26 0.39 TCGA-G4-6294-01 12 59276766 59276766 G T LRIG3 Silent p.L455L 0.34 TCGA-G4-6294-01 12 6334667 6334667 G C CD9 Missense_Mutation p.E48Q 0.30 tolerated(0.1) possibly_damaging(0.685) TCGA-G4-6294-01 12 9002800 9002800 C T A2ML1 Missense_Mutation p.H722Y 0.40 deleterious(0.04) benign(0) TCGA-G4-6294-01 12 9162094 9162094 A C KLRG1 Missense_Mutation p.E177D 0.41 deleterious(0.01) possibly_damaging(0.86) TCGA-G4-6294-01 13 32813925 32813925 G A FRY Silent p.T2198T 0.14 TCGA-G4-6294-01 13 33091935 33091935 T C N4BP2L2 Intron 0.18 TCGA-G4-6294-01 13 36700118 36700118 C T DCLK1 Missense_Mutation p.E53K 0.76 deleterious(0.01) unknown(0) TCGA-G4-6294-01 13 38266276 38266276 T A TRPC4 Missense_Mutation p.K365M 0.16 deleterious(0) probably_damaging(0.992) TCGA-G4-6294-01 13 52509746 52509746 T A ATP7B Silent p.S1369S 0.13 TCGA-G4-6294-01 13 70535578 70535578 T A KLHL1 Splice_Site p.X227_splice 0.06 TCGA-G4-6294-01 13 77459379 77459379 A T KCTD12 Missense_Mutation p.F302Y 0.13 tolerated(0.29) benign(0.005) TCGA-G4-6294-01 13 77743845 77743845 A T MYCBP2 Missense_Mutation p.D1895E 0.13 benign(0.002) TCGA-G4-6294-01 13 94680087 94680087 C T GPC6 Silent p.N272N 0.78 TCGA-G4-6294-01 14 103414133 103414133 G C CDC42BPB Missense_Mutation p.D1152E 0.89 tolerated(1) benign(0) TCGA-G4-6294-01 14 74824581 74824581 C T VRTN Silent p.P365P 0.67 TCGA-G4-6294-01 15 41023444 41023444 G A RAD51 3'UTR 0.10 TCGA-G4-6294-01 15 42179496 42179496 C T SPTBN5 Missense_Mutation p.R268H 0.68 benign(0.109) TCGA-G4-6294-01 15 45694352 45694352 G A SPATA5L1 5'Flank 0.53 TCGA-G4-6294-01 15 77906706 77906706 G A LINGO1 Missense_Mutation p.R515C 0.44 deleterious(0) possibly_damaging(0.729) TCGA-G4-6294-01 16 31473498 31473498 G A ARMC5 Silent p.S210S 0.46 TCGA-G4-6294-01 16 72822041 72822041 C A ZFHX3 Missense_Mutation p.Q3378H 0.35 unknown(0) TCGA-G4-6294-01 16 76509872 76509872 T A CNTNAP4 Nonsense_Mutation p.C491* 0.45 TCGA-G4-6294-01 16 79634521 79634521 T A MAF 5'UTR 0.47 TCGA-G4-6294-01 16 81185435 81185435 A T PKD1L2 RNA 0.39 TCGA-G4-6294-01 16 87678337 87678337 G A JPH3 Missense_Mutation p.E286K 0.49 deleterious(0) probably_damaging(1) TCGA-G4-6294-01 17 10432233 10432233 C T MYH2 Missense_Mutation p.R1173Q 0.84 tolerated(0.13) probably_damaging(1) TCGA-G4-6294-01 17 18226032 18226032 T A SMCR8 Missense_Mutation p.L821H 0.38 tolerated(0.1) possibly_damaging(0.681) TCGA-G4-6294-01 17 21319118 21319118 G T KCNJ12 Missense_Mutation p.C155F 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6294-01 17 42475414 42475414 G T GPATCH8 Missense_Mutation p.P1344Q 0.44 deleterious(0) unknown(0) TCGA-G4-6294-01 17 43531402 43531402 G A PLEKHM1 Missense_Mutation p.R606C 0.79 deleterious(0) probably_damaging(1) TCGA-G4-6294-01 17 55123499 55123499 A T RNF126P1 RNA 0.38 TCGA-G4-6294-01 17 7217902 7217902 C T GPS2 Missense_Mutation p.D37N 0.81 deleterious(0.01) possibly_damaging(0.728) TCGA-G4-6294-01 17 75212337 75212337 T C SEC14L1 Intron 0.38 TCGA-G4-6294-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.82 deleterious(0) probably_damaging(0.997) TCGA-G4-6294-01 17 79870247 79870247 A T SIRT7 3'UTR 0.47 TCGA-G4-6294-01 18 46860179 46860179 A G DYM Missense_Mutation p.V180A 0.13 deleterious(0) benign(0.111) TCGA-G4-6294-01 18 54483359 54483359 C T WDR7 Silent p.D1096D 0.60 TCGA-G4-6294-01 18 70502405 70502405 C A NETO1 Intron 0.78 TCGA-G4-6294-01 18 9886661 9886661 A G TXNDC2 Missense_Mutation p.E62G 0.78 tolerated(0.12) benign(0.009) TCGA-G4-6294-01 19 11289123 11289123 C A KANK2 Missense_Mutation p.G481V 0.42 tolerated(0.35) possibly_damaging(0.628) TCGA-G4-6294-01 19 17638084 17638084 C A FAM129C Missense_Mutation p.L10M 0.42 tolerated_low_confidence(0.26) benign(0.371) TCGA-G4-6294-01 19 17899210 17899210 G T FCHO1 3'UTR 0.36 TCGA-G4-6294-01 19 2934233 2934233 A T ZNF77 Missense_Mutation p.C298S 0.40 deleterious(0) probably_damaging(0.993) TCGA-G4-6294-01 19 33696488 33696488 T C LRP3 Missense_Mutation p.F271S 0.17 tolerated(0.25) possibly_damaging(0.824) TCGA-G4-6294-01 19 36219050 36219050 C T KMT2B Nonsense_Mutation p.R1517* 0.36 TCGA-G4-6294-01 19 42482398 42482398 C A ATP1A3 Missense_Mutation p.D584Y 0.46 deleterious(0) possibly_damaging(0.5) TCGA-G4-6294-01 19 42863342 42863342 C T MEGF8 Silent p.D1745D 0.42 TCGA-G4-6294-01 19 42874511 42874511 G C MEGF8 Missense_Mutation p.E2268D 0.28 tolerated(0.47) benign(0.038) TCGA-G4-6294-01 19 43910413 43910413 G A TEX101 5'UTR 0.35 TCGA-G4-6294-01 19 4517619 4517619 G A PLIN4 Missense_Mutation p.A33V 0.30 tolerated(0.51) benign(0.014) TCGA-G4-6294-01 19 4652716 4652716 T G TNFAIP8L1 3'UTR 0.39 TCGA-G4-6294-01 19 50764874 50764874 G A MYH14 Missense_Mutation p.R856Q 0.53 deleterious(0) probably_damaging(0.998) TCGA-G4-6294-01 1 11586803 11586803 G C PTCHD2 Missense_Mutation p.W903C 0.39 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-G4-6294-01 1 144892163 144892164 - C PDE4DIP Intron 0.14 TCGA-G4-6294-01 1 145598558 145598558 A G POLR3C Missense_Mutation p.L312P 0.06 deleterious(0) probably_damaging(0.999) TCGA-G4-6294-01 1 159409592 159409592 A G OR10J1 Missense_Mutation p.E15G 0.46 tolerated(0.34) benign(0.002) TCGA-G4-6294-01 1 159558241 159558241 C T APCS Nonsense_Mutation p.R139* 0.44 TCGA-G4-6294-01 1 170115323 170115323 C T METTL11B Silent p.S25S 0.12 TCGA-G4-6294-01 1 175355221 175355221 C G TNR Missense_Mutation p.S575T 0.40 tolerated(0.72) benign(0.229) TCGA-G4-6294-01 1 19596080 19596080 C G AKR7L Intron 0.35 TCGA-G4-6294-01 1 196697552 196697552 C A CFH Missense_Mutation p.F771L 0.42 deleterious(0.01) benign(0.109) TCGA-G4-6294-01 1 197390846 197390846 T A CRB1 Missense_Mutation p.F630I 0.05 tolerated(1) benign(0.002) TCGA-G4-6294-01 1 203134557 203134557 G C ADORA1 Missense_Mutation p.E170D 0.36 tolerated(0.18) benign(0.079) TCGA-G4-6294-01 1 205764112 205764112 G T SLC41A1 Silent p.L414L 0.46 TCGA-G4-6294-01 1 226172943 226172943 C T SDE2 3'UTR 0.42 TCGA-G4-6294-01 1 232941374 232941374 G A MAP10 Missense_Mutation p.R202H 0.34 deleterious(0.04) probably_damaging(0.966) TCGA-G4-6294-01 1 32222193 32222193 C T BAI2 Missense_Mutation p.R82H 0.41 deleterious(0) probably_damaging(0.915) TCGA-G4-6294-01 1 38192844 38192844 C T EPHA10 Missense_Mutation p.V568I 0.49 tolerated(1) benign(0.06) TCGA-G4-6294-01 1 41979126 41979126 C T HIVEP3 Silent p.E1922E 0.12 TCGA-G4-6294-01 1 43775166 43775166 C T TIE1 Silent p.G432G 0.41 TCGA-G4-6294-01 1 74575192 74575192 T G LRRIQ3 Missense_Mutation p.R251S 0.39 tolerated(0.31) benign(0.01) TCGA-G4-6294-01 1 7806013 7806013 G A CAMTA1 Silent p.A1493A 0.33 TCGA-G4-6294-01 1 92647634 92647634 C G KIAA1107 Missense_Mutation p.S1027C 0.44 tolerated(0.12) benign(0.009) TCGA-G4-6294-01 1 9658678 9658678 G A TMEM201 Missense_Mutation p.A201T 0.39 tolerated(0.79) benign(0.002) TCGA-G4-6294-01 20 1961241 1961241 C A PDYN Nonsense_Mutation p.E165* 0.22 TCGA-G4-6294-01 20 21687221 21687221 C T PAX1 Silent p.H144H 0.07 TCGA-G4-6294-01 20 3651768 3651768 T A ADAM33 Missense_Mutation p.S709C 0.20 deleterious(0.04) probably_damaging(0.982) TCGA-G4-6294-01 20 61143385 61143385 G A C20orf166 5'Flank 0.45 TCGA-G4-6294-01 20 62038060 62038060 C T KCNQ2 Silent p.P852P 0.29 TCGA-G4-6294-01 20 62055542 62055542 T A KCNQ2 Missense_Mutation p.E412V 0.21 deleterious(0.02) possibly_damaging(0.493) TCGA-G4-6294-01 20 62173663 62173663 G A SRMS Missense_Mutation p.L267F 0.18 tolerated(0.06) possibly_damaging(0.854) TCGA-G4-6294-01 21 10941965 10941965 A T TPTE Silent p.I246I 0.21 TCGA-G4-6294-01 21 31812802 31812802 G T KRTAP15-1 Nonsense_Mutation p.E53* 0.48 TCGA-G4-6294-01 21 31852586 31852586 G T KRTAP19-1 Silent p.G17G 0.36 TCGA-G4-6294-01 22 37627432 37627432 T C RAC2 Splice_Site p.X97_splice 0.84 TCGA-G4-6294-01 2 111562926 111562926 C A ACOXL Missense_Mutation p.T236N 0.38 deleterious(0.01) probably_damaging(0.964) TCGA-G4-6294-01 2 121747795 121747795 C T GLI2 Silent p.D1435D 0.72 TCGA-G4-6294-01 2 162280714 162280714 C G TBR1 Nonsense_Mutation p.Y675* 0.43 TCGA-G4-6294-01 2 1680807 1680807 C T PXDN Missense_Mutation p.R247Q 0.41 tolerated(0.2) possibly_damaging(0.846) TCGA-G4-6294-01 2 179466761 179466761 C G TTN Missense_Mutation p.E18413Q 0.38 TCGA-G4-6294-01 2 179554081 179554081 C T TTN Silent p.K10649K 0.31 TCGA-G4-6294-01 2 179597070 179597070 A T TTN Silent p.P5542P 0.51 TCGA-G4-6294-01 2 220239711 220239711 T C DNPEP Missense_Mutation p.T425A 0.10 deleterious(0) benign(0.2) TCGA-G4-6294-01 2 26717882 26717882 C T OTOF Silent p.V275V 0.43 TCGA-G4-6294-01 2 29073005 29073005 A C TRMT61B 3'UTR 0.43 TCGA-G4-6294-01 2 32733167 32733167 T C BIRC6 Missense_Mutation p.V3274A 0.47 possibly_damaging(0.544) TCGA-G4-6294-01 2 89246990 89246990 C A IGKV1-5 Missense_Mutation p.Q60H 0.81 deleterious(0.03) benign(0.365) TCGA-G4-6294-01 3 125877429 125877429 C T ALDH1L1 Missense_Mutation p.A71T 0.27 tolerated_low_confidence(0.54) benign(0.003) TCGA-G4-6294-01 3 135820888 135820888 C T PPP2R3A Silent p.D989D 0.27 TCGA-G4-6294-01 3 164748630 164748630 A C SI Missense_Mutation p.L921R 0.24 deleterious(0) probably_damaging(0.972) TCGA-G4-6294-01 3 183706376 183706376 C G ABCC5 Missense_Mutation p.D143H 0.27 tolerated(0.1) benign(0.013) TCGA-G4-6294-01 3 195517843 195517843 G A MUC4 Missense_Mutation p.T203M 0.60 unknown(0) TCGA-G4-6294-01 3 19554806 19554806 C A KCNH8 Missense_Mutation p.D808E 0.43 tolerated(0.21) benign(0.003) TCGA-G4-6294-01 3 38293858 38293858 C G OXSR1 Nonsense_Mutation p.S495* 0.34 TCGA-G4-6294-01 3 46620624 46620624 G A TDGF1 Silent p.L25L 0.39 TCGA-G4-6294-01 3 46620625 46620625 G A TDGF1 Missense_Mutation p.G26R 0.39 deleterious(0.01) possibly_damaging(0.813) TCGA-G4-6294-01 3 51749401 51749401 G A GRM2 Missense_Mutation p.A538T 0.37 tolerated(0.34) benign(0.027) TCGA-G4-6294-01 4 126412193 126412193 A T FAT4 Missense_Mutation p.Q4739L 0.47 benign(0.11) TCGA-G4-6294-01 4 13600646 13600646 G C BOD1L1 Missense_Mutation p.N2626K 0.43 benign(0.05) TCGA-G4-6294-01 4 138452897 138452897 C G PCDH18 Missense_Mutation p.E116Q 0.40 tolerated(0.07) benign(0.014) TCGA-G4-6294-01 4 147560535 147560535 C T POU4F2 Silent p.G81G 0.40 TCGA-G4-6294-01 4 148407183 148407183 C T EDNRA Missense_Mutation p.A117V 0.46 tolerated(1) probably_damaging(0.924) TCGA-G4-6294-01 4 152682118 152682118 A G PET112 Missense_Mutation p.L6P 0.08 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-G4-6294-01 4 155507618 155507618 C T FGA Nonsense_Mutation p.W321* 0.36 TCGA-G4-6294-01 4 183713541 183713541 C T TENM3 Nonsense_Mutation p.R1906* 0.48 TCGA-G4-6294-01 4 185941873 185941873 G A HELT Missense_Mutation p.A311T 0.15 tolerated_low_confidence(0.16) benign(0.005) TCGA-G4-6294-01 4 6621667 6621667 C T MAN2B2 Missense_Mutation p.A943V 0.48 deleterious(0.04) benign(0.278) TCGA-G4-6294-01 4 68928481 68928481 C G TMPRSS11F Intron 0.36 TCGA-G4-6294-01 4 87685866 87685866 A T PTPN13 Missense_Mutation p.I1380L 0.71 tolerated(0.15) benign(0.423) TCGA-G4-6294-01 4 93511365 93511365 T A GRID2 Missense_Mutation p.L58I 0.66 tolerated(0.05) possibly_damaging(0.874) TCGA-G4-6294-01 5 112174094 112174095 - A APC Nonsense_Mutation p.Y935* 0.27 TCGA-G4-6294-01 5 112175507 112175507 C T APC Nonsense_Mutation p.Q1406* 0.36 TCGA-G4-6294-01 5 121736799 121736799 C T SNCAIP Intron 0.39 TCGA-G4-6294-01 5 128364057 128364057 G A SLC27A6 Missense_Mutation p.A492T 0.51 deleterious(0.01) possibly_damaging(0.844) TCGA-G4-6294-01 5 140476089 140476089 C T PCDHB2 Missense_Mutation p.A572V 0.42 tolerated_low_confidence(0.05) benign(0.117) TCGA-G4-6294-01 5 140564033 140564033 C T PCDHB16 Silent p.R633R 0.38 TCGA-G4-6294-01 5 142586930 142586930 G T ARHGAP26 Missense_Mutation p.R719L 0.42 tolerated(0.32) benign(0) TCGA-G4-6294-01 5 146730672 146730672 A G STK32A Missense_Mutation p.R173G 0.39 tolerated(0.41) benign(0) TCGA-G4-6294-01 5 148727914 148727914 C T GRPEL2 Missense_Mutation p.L53F 0.41 tolerated(0.05) possibly_damaging(0.892) TCGA-G4-6294-01 5 156734837 156734837 G C CYFIP2 Missense_Mutation p.K262N 0.28 deleterious(0.04) possibly_damaging(0.458) TCGA-G4-6294-01 5 169291421 169291421 T G FAM196B Missense_Mutation p.E488D 0.34 tolerated(0.08) benign(0.043) TCGA-G4-6294-01 5 178581120 178581120 G T ADAMTS2 Missense_Mutation p.L438M 0.41 deleterious(0) probably_damaging(0.987) TCGA-G4-6294-01 5 26915852 26915852 G A CDH9 Missense_Mutation p.R137W 0.34 deleterious(0) possibly_damaging(0.906) TCGA-G4-6294-01 5 35814564 35814564 A C SPEF2 Splice_Site p.X1794_splice 0.38 TCGA-G4-6294-01 5 40716202 40716202 G C TTC33 3'UTR 0.44 TCGA-G4-6294-01 5 61876419 61876419 G T LRRC70 Missense_Mutation p.C385F 0.47 deleterious(0) probably_damaging(0.998) TCGA-G4-6294-01 5 76926287 76926287 G C OTP Missense_Mutation p.N260K 0.34 deleterious(0.02) probably_damaging(0.922) TCGA-G4-6294-01 6 107780392 107780392 G T PDSS2 Missense_Mutation p.S33Y 0.39 tolerated(0.38) benign(0.008) TCGA-G4-6294-01 6 109931647 109931647 G T AK9 Missense_Mutation p.T588N 0.11 deleterious(0.04) benign(0.065) TCGA-G4-6294-01 6 119569512 119569512 C T MAN1A1 Missense_Mutation p.R302Q 0.42 deleterious(0.01) possibly_damaging(0.877) TCGA-G4-6294-01 6 146242529 146242529 C G SHPRH Splice_Site p.X1261_splice 0.34 TCGA-G4-6294-01 6 160219286 160219286 G A MRPL18 3'UTR 0.82 TCGA-G4-6294-01 6 29012069 29012069 T G OR2W1 Missense_Mutation p.K295T 0.27 deleterious(0.01) possibly_damaging(0.791) TCGA-G4-6294-01 6 31624999 31624999 C A APOM Intron 0.30 TCGA-G4-6294-01 6 33133710 33133710 G T COL11A2 Missense_Mutation p.P1408T 0.35 unknown(0) TCGA-G4-6294-01 6 33143401 33143401 G A COL11A2 Missense_Mutation p.R690C 0.15 possibly_damaging(0.835) TCGA-G4-6294-01 6 57398165 57398165 C G PRIM2 Missense_Mutation p.Q290E 0.15 tolerated(0.06) benign(0.274) TCGA-G4-6294-01 6 63995610 63995610 G A LGSN Missense_Mutation p.S71F 0.34 deleterious(0) possibly_damaging(0.823) TCGA-G4-6294-01 6 74063085 74063085 G A DPPA5 Silent p.A103A 0.36 TCGA-G4-6294-01 6 80732070 80732070 C G TTK Missense_Mutation p.P380A 0.47 tolerated(0.09) benign(0.003) TCGA-G4-6294-01 7 117431284 117431284 G - CTTNBP2 Frame_Shift_Del p.V657Sfs*12 0.24 TCGA-G4-6294-01 7 123672226 123672226 G A TMEM229A Missense_Mutation p.L278F 0.48 deleterious(0) probably_damaging(0.997) TCGA-G4-6294-01 7 127253864 127253864 C T PAX4 Missense_Mutation p.G162S 0.45 tolerated(0.49) benign(0.007) TCGA-G4-6294-01 7 151135175 151135175 G A CRYGN Silent p.G59G 0.79 TCGA-G4-6294-01 7 154876278 154876278 A G HTR5A 3'UTR 0.78 TCGA-G4-6294-01 7 21654762 21654762 G A DNAH11 Missense_Mutation p.E1295K 0.31 probably_damaging(0.986) TCGA-G4-6294-01 7 23826129 23826129 C T STK31 Silent p.G759G 0.30 TCGA-G4-6294-01 7 42085015 42085015 G T GLI3 Missense_Mutation p.A265D 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6294-01 7 7516765 7516765 C A COL28A1 Missense_Mutation p.G404V 0.65 deleterious(0) probably_damaging(0.999) TCGA-G4-6294-01 7 87079392 87079392 C T ABCB4 Missense_Mutation p.S242N 0.45 deleterious(0) benign(0.189) TCGA-G4-6294-01 7 87849313 87849313 C A SRI Missense_Mutation p.G10V 0.62 tolerated(0.38) unknown(0) TCGA-G4-6294-01 7 87849314 87849314 C A SRI Missense_Mutation p.G10C 0.56 tolerated(0.11) unknown(0) TCGA-G4-6294-01 7 94298378 94298378 T A PEG10 3'UTR 0.40 TCGA-G4-6294-01 7 99757592 99757592 C T GAL3ST4 Missense_Mutation p.V474I 0.43 tolerated(0.11) benign(0.008) TCGA-G4-6294-01 8 11163894 11163894 C T MTMR9 Nonsense_Mutation p.R263* 0.35 TCGA-G4-6294-01 8 121211701 121211701 G T COL14A1 Missense_Mutation p.G258V 0.38 deleterious(0) probably_damaging(0.988) TCGA-G4-6294-01 8 145540335 145540335 C T DGAT1 Missense_Mutation p.G450D 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6294-01 8 17104772 17104772 C G VPS37A Missense_Mutation p.L7V 0.42 tolerated(0.25) benign(0.293) TCGA-G4-6294-01 8 38775487 38775487 C G PLEKHA2 Missense_Mutation p.L14V 0.46 deleterious(0) probably_damaging(0.997) TCGA-G4-6294-01 8 38845595 38845595 T C HTRA4 Missense_Mutation p.V470A 0.06 deleterious(0) possibly_damaging(0.821) TCGA-G4-6294-01 8 43173737 43173737 C A POTEA RNA 0.40 TCGA-G4-6294-01 8 67417628 67417628 C T C8orf46 Silent p.L49L 0.37 TCGA-G4-6294-01 8 67577554 67577554 C G VCPIP1 Missense_Mutation p.R547P 0.41 deleterious(0) probably_damaging(0.999) TCGA-G4-6294-01 8 77763207 77763207 G A ZFHX4 Silent p.P1350P 0.47 TCGA-G4-6294-01 8 81571872 81571872 C T ZNF704 Missense_Mutation p.S327N 0.45 tolerated(0.58) benign(0.005) TCGA-G4-6294-01 8 94712852 94712852 G A FAM92A1 5'UTR 0.38 TCGA-G4-6294-01 9 123787826 123787826 A G C5 Silent p.D302D 0.42 TCGA-G4-6294-01 9 131702742 131702742 C T PHYHD1 Missense_Mutation p.T177M 0.43 tolerated(0.15) possibly_damaging(0.855) TCGA-G4-6294-01 9 135554480 135554480 A T GTF3C4 Missense_Mutation p.I492F 0.38 deleterious(0) benign(0.296) TCGA-G4-6294-01 9 136583814 136583814 G A SARDH Intron 0.44 TCGA-G4-6294-01 9 137774426 137774426 G T FCN2 Missense_Mutation p.C52F 0.46 deleterious(0.04) possibly_damaging(0.83) TCGA-G4-6294-01 9 20923750 20923750 T C FOCAD Missense_Mutation p.S982P 0.05 tolerated(0.14) benign(0.003) TCGA-G4-6294-01 9 26892328 26892328 G A CAAP1 Intron 0.56 TCGA-G4-6294-01 9 37919829 37919829 T A SHB Missense_Mutation p.R507W 0.46 deleterious(0) probably_damaging(0.972) TCGA-G4-6294-01 X 105450524 105450524 T A MUM1L1 Missense_Mutation p.S367T 0.44 tolerated(0.68) benign(0.385) TCGA-G4-6294-01 X 117707919 117707919 G A DOCK11 Missense_Mutation p.G443S 0.44 tolerated(0.36) benign(0.037) TCGA-G4-6294-01 X 140969214 140969214 A T MAGEC3 Missense_Mutation p.T181S 0.45 tolerated(0.79) benign(0.292) TCGA-G4-6294-01 X 37028123 37028123 G A FAM47C Missense_Mutation p.R547H 0.89 tolerated_low_confidence(0.55) unknown(0) TCGA-G4-6294-01 X 51644686 51644686 T A MAGED1 Missense_Mutation p.F722Y 0.94 tolerated_low_confidence(0.75) benign(0.033) TCGA-G4-6294-01 X 7811541 7811541 T A VCX Silent p.T35T 0.12 TCGA-G4-6294-01 X 8138388 8138388 A T VCX2 Silent p.T35T 0.18 TCGA-G4-6294-01 X 8768134 8768134 C A FAM9A Missense_Mutation p.A27S 0.46 tolerated_low_confidence(0.54) benign(0.012) TCGA-G4-6295-01 10 115608767 115608767 C T DCLRE1A Silent p.K699K 0.28 TCGA-G4-6295-01 10 11911450 11911450 G A PROSER2 Intron 0.32 TCGA-G4-6295-01 10 135193704 135193704 C T PAOX Missense_Mutation p.A128V 0.28 tolerated(0.32) benign(0.013) TCGA-G4-6295-01 10 16949670 16949670 A T CUBN Missense_Mutation p.N2514K 0.28 deleterious(0.01) probably_damaging(1) TCGA-G4-6295-01 10 518483 518483 T A DIP2C Missense_Mutation p.D55V 0.24 deleterious(0.02) benign(0.114) TCGA-G4-6295-01 10 53893637 53893637 G T PRKG1 Missense_Mutation p.A325S 0.05 tolerated(0.07) benign(0.005) TCGA-G4-6295-01 10 76803679 76803679 G C DUPD1 Missense_Mutation p.D99E 0.28 tolerated(0.67) benign(0.001) TCGA-G4-6295-01 10 92617017 92617017 C T HTR7 Missense_Mutation p.V138I 0.44 tolerated(0.08) possibly_damaging(0.464) TCGA-G4-6295-01 11 113295224 113295224 G A DRD2 Silent p.F50F 0.22 TCGA-G4-6295-01 11 18327816 18327816 C G HPS5 Silent p.G230G 0.27 TCGA-G4-6295-01 11 36297713 36297713 C T COMMD9 Missense_Mutation p.V144I 0.32 tolerated(0.12) benign(0.038) TCGA-G4-6295-01 11 55322043 55322043 C A OR4C15 Nonsense_Mutation p.Y87* 0.27 TCGA-G4-6295-01 11 67177061 67177061 C T TBC1D10C Missense_Mutation p.R393W 0.21 deleterious(0) benign(0.38) TCGA-G4-6295-01 11 6898079 6898079 G T OR10A4 Missense_Mutation p.L67F 0.05 tolerated(0.36) probably_damaging(0.999) TCGA-G4-6295-01 11 72114061 72114061 T C CLPB Missense_Mutation p.H164R 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6295-01 11 72406806 72406806 C A ARAP1 Missense_Mutation p.R1126L 0.18 tolerated(0.06) benign(0.012) TCGA-G4-6295-01 11 89537419 89537419 C G TRIM49 Missense_Mutation p.M73I 0.10 deleterious(0.05) benign(0.024) TCGA-G4-6295-01 11 93806552 93806552 T C HEPHL1 Missense_Mutation p.L484S 0.27 deleterious(0.01) possibly_damaging(0.602) TCGA-G4-6295-01 11 95522680 95522680 C T FAM76B 5'UTR 0.41 TCGA-G4-6295-01 12 109192929 109192929 C T SSH1 Missense_Mutation p.R399H 0.45 deleterious(0.01) probably_damaging(1) TCGA-G4-6295-01 12 109278897 109278897 T G DAO Missense_Mutation p.F39V 0.14 deleterious(0) probably_damaging(0.993) TCGA-G4-6295-01 12 109309621 109309621 C T SVOP Missense_Mutation p.G395S 0.29 deleterious(0) possibly_damaging(0.731) TCGA-G4-6295-01 12 115118757 115118758 - C TBX3 Frame_Shift_Ins p.E195Gfs*32 0.37 TCGA-G4-6295-01 12 18466962 18466962 G A PIK3C2G Silent p.Q367Q 0.19 TCGA-G4-6295-01 12 19671659 19671659 C T AEBP2 3'UTR 0.46 TCGA-G4-6295-01 12 29650592 29650592 A G OVCH1 Silent p.L10L 0.08 TCGA-G4-6295-01 12 46285681 46285682 TC - ARID2 Frame_Shift_Del p.S1681Ffs*8 0.33 TCGA-G4-6295-01 12 49428683 49428683 G T KMT2D Missense_Mutation p.P3423T 0.43 probably_damaging(0.991) TCGA-G4-6295-01 12 56744908 56744908 A C STAT2 Silent p.T336T 0.24 TCGA-G4-6295-01 12 57858916 57858916 C A GLI1 Missense_Mutation p.Q138K 0.24 tolerated(0.06) benign(0.103) TCGA-G4-6295-01 12 6439113 6439113 G A TNFRSF1A Silent p.S296S 0.60 TCGA-G4-6295-01 12 70824552 70824552 A G KCNMB4 3'UTR 0.26 TCGA-G4-6295-01 12 80191169 80191169 T A PPP1R12A Missense_Mutation p.T700S 0.28 deleterious(0) probably_damaging(0.989) TCGA-G4-6295-01 12 85531631 85531631 G T LRRIQ1 Missense_Mutation p.V1405F 0.32 tolerated(0.41) probably_damaging(0.988) TCGA-G4-6295-01 12 89744592 89744592 G A DUSP6 Missense_Mutation p.P204L 0.25 deleterious(0.01) benign(0.197) TCGA-G4-6295-01 12 93835760 93835760 C A UBE2N 5'UTR 0.32 TCGA-G4-6295-01 13 32605936 32605936 G T FRY Missense_Mutation p.A2S 0.44 tolerated_low_confidence(0.17) benign(0.112) TCGA-G4-6295-01 13 37453576 37453576 C T SMAD9 Missense_Mutation p.R84H 0.26 deleterious(0.03) probably_damaging(0.992) TCGA-G4-6295-01 14 102508732 102508732 T A DYNC1H1 Missense_Mutation p.L4096Q 0.41 probably_damaging(0.998) TCGA-G4-6295-01 14 102508771 102508771 T C DYNC1H1 Missense_Mutation p.L4109P 0.38 probably_damaging(0.999) TCGA-G4-6295-01 14 103932376 103932376 A G MARK3 Missense_Mutation p.N282S 0.25 tolerated(0.17) probably_damaging(0.986) TCGA-G4-6295-01 14 21550036 21550036 C G ARHGEF40 Silent p.A1003A 0.42 TCGA-G4-6295-01 14 30132955 30132955 G A PRKD1 Missense_Mutation p.R216C 0.34 deleterious(0) probably_damaging(0.931) TCGA-G4-6295-01 14 33292815 33292815 T C AKAP6 Silent p.H1932H 0.33 TCGA-G4-6295-01 14 45473539 45473539 A G FAM179B Missense_Mutation p.K872E 0.31 tolerated(0.05) probably_damaging(0.932) TCGA-G4-6295-01 14 55455803 55455803 G C WDHD1 Missense_Mutation p.A490G 0.31 tolerated(0.09) benign(0.106) TCGA-G4-6295-01 14 96937945 96937945 T A AK7 Splice_Site p.X496_splice 0.26 TCGA-G4-6295-01 15 23932431 23932431 C T NDN 5'UTR 0.33 TCGA-G4-6295-01 15 35082461 35082461 T G ACTC1 3'UTR 0.43 TCGA-G4-6295-01 15 40758335 40758335 T C BAHD1 3'UTR 0.09 TCGA-G4-6295-01 15 43027356 43027356 A T CDAN1 Missense_Mutation p.F360I 0.05 deleterious(0.02) probably_damaging(0.974) TCGA-G4-6295-01 15 73615439 73615439 G A HCN4 Missense_Mutation p.R999W 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6295-01 15 90320491 90320491 G A MESP2 Silent p.L301L 0.37 TCGA-G4-6295-01 16 14989691 14989691 G A NOMO1 3'UTR 0.25 TCGA-G4-6295-01 16 19195024 19195024 A G SYT17 Missense_Mutation p.D169G 0.30 deleterious(0.04) benign(0.141) TCGA-G4-6295-01 16 19451864 19451864 C G TMC5 Missense_Mutation p.S168R 0.22 tolerated_low_confidence(0.05) benign(0.003) TCGA-G4-6295-01 16 20999128 20999128 C G DNAH3 Missense_Mutation p.D2257H 0.31 tolerated(0.06) benign(0.022) TCGA-G4-6295-01 16 2103455 2103455 T A TSC2 Splice_Site p.X112_splice 0.11 TCGA-G4-6295-01 16 22447029 22447029 C T RRN3P3 RNA 0.22 TCGA-G4-6295-01 16 23080124 23080124 G A USP31 Missense_Mutation p.P1101L 0.45 tolerated_low_confidence(0.18) benign(0.036) TCGA-G4-6295-01 16 30671610 30671610 G A FBRS Silent p.E162E 0.29 TCGA-G4-6295-01 16 31049284 31049284 A G STX4 Missense_Mutation p.N139S 0.16 tolerated(0.34) benign(0.026) TCGA-G4-6295-01 16 31447953 31447953 C G ZNF843 Missense_Mutation p.W73S 0.14 tolerated_low_confidence(0.65) benign(0.008) TCGA-G4-6295-01 16 426618 426618 C T TMEM8A Nonsense_Mutation p.W277* 0.25 TCGA-G4-6295-01 16 66511573 66511573 G A BEAN1 Missense_Mutation p.A134T 0.28 tolerated(0.08) benign(0.318) TCGA-G4-6295-01 16 67271223 67271223 C A FHOD1 Missense_Mutation p.Q304H 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-G4-6295-01 16 69074248 69074248 G T TANGO6 Missense_Mutation p.G1011V 0.26 tolerated(0.26) benign(0) TCGA-G4-6295-01 16 70841561 70841561 C G HYDIN Silent p.L5096L 0.25 TCGA-G4-6295-01 16 816765 816765 C A MSLN Missense_Mutation p.S451Y 0.20 tolerated(1) benign(0.063) TCGA-G4-6295-01 16 88593251 88593251 C T ZFPM1 Silent p.D144D 0.54 TCGA-G4-6295-01 16 88717448 88717448 G A CYBA 5'UTR 0.24 TCGA-G4-6295-01 16 90110005 90110005 C G GAS8 3'UTR 0.25 TCGA-G4-6295-01 17 2324158 2324158 T A METTL16 Missense_Mutation p.K310I 0.58 deleterious(0) probably_damaging(0.965) TCGA-G4-6295-01 17 26732244 26732244 G A SLC46A1 Silent p.F157F 0.52 TCGA-G4-6295-01 17 29587534 29587534 G C NF1 Splice_Site p.X1526_splice 0.40 TCGA-G4-6295-01 17 36486375 36486375 C T GPR179 Missense_Mutation p.R1026Q 0.34 tolerated(0.07) possibly_damaging(0.9) TCGA-G4-6295-01 17 40011260 40011260 C T KLHL11 Missense_Mutation p.E287K 0.31 tolerated(0.13) benign(0.077) TCGA-G4-6295-01 17 4638805 4638805 T C CXCL16 Splice_Site p.X120_splice 0.42 TCGA-G4-6295-01 17 72926892 72926892 G A OTOP2 Missense_Mutation p.V388M 0.28 deleterious(0) probably_damaging(0.995) TCGA-G4-6295-01 17 7578471 7578478 GGGCGGGG - TP53 Frame_Shift_Del p.P151Rfs*27 0.48 TCGA-G4-6295-01 17 79847061 79847061 C G ALYREF Missense_Mutation p.D179H 0.27 deleterious(0) probably_damaging(0.99) TCGA-G4-6295-01 18 19284483 19284483 G C ABHD3 Nonsense_Mutation p.Y48* 0.41 TCGA-G4-6295-01 18 47787472 47787472 C T CCDC11 Silent p.R145R 0.34 TCGA-G4-6295-01 18 52556546 52556546 C T RAB27B Nonsense_Mutation p.Q187* 0.09 TCGA-G4-6295-01 18 56203943 56203943 G T ALPK2 Missense_Mutation p.T1159K 0.22 tolerated(0.88) benign(0.003) TCGA-G4-6295-01 19 13015463 13015463 G A SYCE2 Missense_Mutation p.T50M 0.33 tolerated(0.25) benign(0.004) TCGA-G4-6295-01 19 17691551 17691551 G A COLGALT1 Missense_Mutation p.A480T 0.35 tolerated(0.16) benign(0.41) TCGA-G4-6295-01 19 18860630 18860630 G A CRTC1 Silent p.T177T 0.38 TCGA-G4-6295-01 19 35758629 35758629 C G LSR Missense_Mutation p.L636V 0.40 deleterious(0) benign(0.398) TCGA-G4-6295-01 19 38028629 38028629 C T ZNF793 Missense_Mutation p.H357Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6295-01 19 55994230 55994230 G A ZNF628 Missense_Mutation p.R557H 0.47 deleterious(0.01) possibly_damaging(0.706) TCGA-G4-6295-01 19 56104031 56104031 G T FIZ1 Missense_Mutation p.P426T 0.29 deleterious(0.02) probably_damaging(0.927) TCGA-G4-6295-01 1 111966168 111966168 A G OVGP1 Silent p.I160I 0.37 TCGA-G4-6295-01 1 155990724 155990724 G A SSR2 5'UTR 0.36 TCGA-G4-6295-01 1 155990725 155990725 A T SSR2 5'UTR 0.34 TCGA-G4-6295-01 1 158151872 158151872 G A CD1D Missense_Mutation p.A127T 0.29 tolerated(0.5) benign(0.003) TCGA-G4-6295-01 1 16354557 16354557 G A CLCNKA Missense_Mutation p.R304Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6295-01 1 16921485 16921485 G C NBPF1 5'UTR 0.06 TCGA-G4-6295-01 1 175104993 175104993 C T TNN Missense_Mutation p.R1115W 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6295-01 1 179966054 179966054 A T CEP350 Silent p.L254L 0.19 TCGA-G4-6295-01 1 198676042 198676042 A G PTPRC Missense_Mutation p.T289A 0.27 tolerated(0.62) benign(0.012) TCGA-G4-6295-01 1 203139496 203139496 C T MYBPH Missense_Mutation p.R339Q 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-G4-6295-01 1 209974587 209974595 TAAAAATGG - IRF6 In_Frame_Del p.T55_F57del 0.23 TCGA-G4-6295-01 1 223936819 223936819 G A CAPN2 Missense_Mutation p.E270K 0.39 tolerated(0.24) benign(0.01) TCGA-G4-6295-01 1 225533806 225533806 G T DNAH14 Silent p.A2711A 0.33 TCGA-G4-6295-01 1 226030139 226030139 C T EPHX1 Missense_Mutation p.T335M 0.28 tolerated(0.09) benign(0.042) TCGA-G4-6295-01 1 244220450 244220462 TTACTTGAAGAGT - ZBTB18 3'UTR 0.32 TCGA-G4-6295-01 1 248202156 248202156 G A OR2L2 Missense_Mutation p.S196N 0.34 tolerated(0.18) benign(0.002) TCGA-G4-6295-01 1 26127557 26127557 G T SEPN1 Silent p.G69G 0.27 TCGA-G4-6295-01 1 26365782 26365782 C T SLC30A2 Missense_Mutation p.A330T 0.39 tolerated(0.26) possibly_damaging(0.59) TCGA-G4-6295-01 1 26664110 26664110 T A AIM1L Missense_Mutation p.D314V 0.34 deleterious(0) probably_damaging(0.993) TCGA-G4-6295-01 1 33944835 33944835 C T ZSCAN20 5'UTR 0.27 TCGA-G4-6295-01 1 90473189 90473189 G T ZNF326 Missense_Mutation p.M165I 0.29 tolerated(0.09) possibly_damaging(0.48) TCGA-G4-6295-01 1 989900 989900 G A AGRN Silent p.T1983T 0.27 TCGA-G4-6295-01 20 1963678 1963678 G T PDYN Missense_Mutation p.T18N 0.42 tolerated(0.15) benign(0.032) TCGA-G4-6295-01 20 25596458 25596458 T G NANP 3'UTR 0.09 TCGA-G4-6295-01 20 30584942 30584942 G A XKR7 Silent p.R474R 0.15 TCGA-G4-6295-01 20 33585345 33585345 C G MYH7B Missense_Mutation p.L1259V 0.10 probably_damaging(0.998) TCGA-G4-6295-01 20 35672549 35672549 G A RBL1 Silent p.H570H 0.10 TCGA-G4-6295-01 20 44511630 44511630 G A ZSWIM1 Silent p.K133K 0.61 TCGA-G4-6295-01 20 49510577 49510577 C T ADNP Missense_Mutation p.R225Q 0.12 tolerated(0.09) benign(0.12) TCGA-G4-6295-01 20 58514500 58514500 C T PPP1R3D Missense_Mutation p.V163I 0.12 tolerated(1) benign(0.001) TCGA-G4-6295-01 20 58520399 58520399 A G FAM217B 3'UTR 0.61 TCGA-G4-6295-01 20 58522516 58522516 G A FAM217B 3'UTR 0.48 TCGA-G4-6295-01 20 741931 741931 G A SLC52A3 Intron 0.35 TCGA-G4-6295-01 21 10934952 10934952 C T TPTE Missense_Mutation p.V281I 0.10 tolerated(0.25) benign(0.268) TCGA-G4-6295-01 21 10952913 10952913 C A TPTE Missense_Mutation p.G95V 0.24 deleterious(0.01) possibly_damaging(0.818) TCGA-G4-6295-01 21 19629354 19629354 G T CHODL Missense_Mutation p.A153S 0.36 tolerated(0.06) possibly_damaging(0.739) TCGA-G4-6295-01 21 47552208 47552208 C T COL6A2 Silent p.G934G 0.39 TCGA-G4-6295-01 22 36716375 36716375 C T MYH9 Missense_Mutation p.R301H 0.34 benign(0.298) TCGA-G4-6295-01 22 42335087 42335087 A T CENPM Silent p.S172S 0.27 TCGA-G4-6295-01 22 50664243 50664243 A G TUBGCP6 Missense_Mutation p.S655P 0.26 deleterious(0.01) possibly_damaging(0.773) TCGA-G4-6295-01 2 101656777 101656777 G A TBC1D8 Missense_Mutation p.H300Y 0.35 tolerated(0.21) benign(0.035) TCGA-G4-6295-01 2 105654678 105654678 G A MRPS9 Missense_Mutation p.R43K 0.12 tolerated_low_confidence(0.89) benign(0.035) TCGA-G4-6295-01 2 150426606 150426638 TCATCAACAGAGAATCCTAAATGTCGGTAGCGT - MMADHC In_Frame_Del p.E247_D257del 0.29 TCGA-G4-6295-01 2 170417085 170417085 G A FASTKD1 Silent p.D261D 0.21 TCGA-G4-6295-01 2 182322471 182322471 C T ITGA4 Silent p.T30T 0.50 TCGA-G4-6295-01 2 210570334 210570334 T A MAP2 Missense_Mutation p.S1539T 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-G4-6295-01 2 29455227 29455227 C G ALK Missense_Mutation p.E859Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-G4-6295-01 2 56145089 56145089 C T EFEMP1 Silent p.Q76Q 0.15 TCGA-G4-6295-01 2 56145090 56145090 T C EFEMP1 Missense_Mutation p.Q76R 0.15 tolerated(0.36) benign(0.137) TCGA-G4-6295-01 2 61188598 61188598 C G PUS10 Missense_Mutation p.G292R 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6295-01 2 69553167 69553167 T A GFPT1 3'UTR 0.65 TCGA-G4-6295-01 2 69870216 69870216 G T AAK1 5'UTR 0.32 TCGA-G4-6295-01 2 71576635 71576635 G A ZNF638 Missense_Mutation p.R184H 0.43 tolerated(0.57) probably_damaging(0.999) TCGA-G4-6295-01 2 74699829 74699829 C T MRPL53 5'UTR 0.49 TCGA-G4-6295-01 2 97526334 97526334 G A SEMA4C 3'UTR 0.42 TCGA-G4-6295-01 2 98996809 98996809 A T CNGA3 Missense_Mutation p.R129S 0.11 tolerated(0.18) benign(0.006) TCGA-G4-6295-01 3 120976076 120976076 G A STXBP5L Silent p.P576P 0.27 TCGA-G4-6295-01 3 128890606 128890606 C A CNBP 5'UTR 0.52 TCGA-G4-6295-01 3 14862719 14862719 G A FGD5 Missense_Mutation p.R714Q 0.26 tolerated(0.05) probably_damaging(0.943) TCGA-G4-6295-01 3 178937799 178937799 G T PIK3CA Missense_Mutation p.L658F 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6295-01 3 53845156 53845156 G C CACNA1D Missense_Mutation p.G2090A 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6295-01 3 55504422 55504422 G A WNT5A Missense_Mutation p.R281W 0.45 deleterious(0) probably_damaging(0.998) TCGA-G4-6295-01 3 58196665 58196665 A T DNASE1L3 Intron 0.26 TCGA-G4-6295-01 3 65344779 65344779 C G MAGI1 Intron 0.14 TCGA-G4-6295-01 4 2420019 2420019 T C ZFYVE28 Missense_Mutation p.K11R 0.27 tolerated(0.3) benign(0.209) TCGA-G4-6295-01 4 25014087 25014087 C T LGI2 Silent p.S230S 0.32 TCGA-G4-6295-01 5 112164626 112164627 - AAGTGTGA APC Frame_Shift_Ins p.A571Vfs*2 0.21 TCGA-G4-6295-01 5 112175676 112175679 AGAG - APC Frame_Shift_Del p.E1464Vfs*8 0.36 TCGA-G4-6295-01 5 112178620 112178620 C G APC Missense_Mutation p.F2443L 0.30 probably_damaging(0.997) TCGA-G4-6295-01 5 13839598 13839598 G C DNAH5 Missense_Mutation p.L1917V 0.20 benign(0.364) TCGA-G4-6295-01 5 140474400 140474400 G A PCDHB2 Missense_Mutation p.R9H 0.36 tolerated_low_confidence(0.08) benign(0.004) TCGA-G4-6295-01 5 140536897 140536897 C T PCDHB17 Missense_Mutation p.R441W 0.26 tolerated_low_confidence(0.07) probably_damaging(0.943) TCGA-G4-6295-01 5 148742115 148742115 C T PCYOX1L Intron 0.23 TCGA-G4-6295-01 5 150227523 150227523 G A IRGM 5'UTR 0.36 TCGA-G4-6295-01 5 150914139 150914139 C T FAT2 Silent p.K3086K 0.36 TCGA-G4-6295-01 5 33576443 33576443 C T ADAMTS12 Missense_Mutation p.E1230K 0.30 tolerated(1) benign(0.001) TCGA-G4-6295-01 5 35857092 35857092 G T IL7R Missense_Mutation p.G5C 0.33 tolerated(0.1) benign(0.33) TCGA-G4-6295-01 5 40852694 40852694 G T CARD6 Missense_Mutation p.M420I 0.34 deleterious(0.01) probably_damaging(0.933) TCGA-G4-6295-01 5 56778558 56778558 C T ACTBL2 5'UTR 0.29 TCGA-G4-6295-01 5 71521884 71521884 C T MRPS27 Silent p.A279A 0.37 TCGA-G4-6295-01 6 10410492 10410492 C A TFAP2A Missense_Mutation p.S41I 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-G4-6295-01 6 116289820 116289820 A C FRK Missense_Mutation p.F183L 0.07 deleterious(0.02) possibly_damaging(0.869) TCGA-G4-6295-01 6 136552381 136552381 T C MTFR2 3'UTR 0.20 TCGA-G4-6295-01 6 146755478 146755478 C T GRM1 Missense_Mutation p.A1044V 0.43 deleterious_low_confidence(0.02) benign(0.001) TCGA-G4-6295-01 6 154360772 154360772 G A OPRM1 Nonsense_Mutation p.W124* 0.53 TCGA-G4-6295-01 6 170103692 170103692 A C C6orf120 3'UTR 0.29 TCGA-G4-6295-01 6 31497617 31497617 G A MCCD1 Missense_Mutation p.E89K 0.27 deleterious(0.01) benign(0.315) TCGA-G4-6295-01 6 33037627 33037627 G A HLA-DPA1 Missense_Mutation p.T46M 0.24 deleterious(0.04) possibly_damaging(0.475) TCGA-G4-6295-01 6 40360438 40360438 G A LRFN2 Silent p.I538I 0.31 TCGA-G4-6295-01 6 49519060 49519060 T G C6orf141 Silent p.T185T 0.17 TCGA-G4-6295-01 6 64289176 64289176 T A PTP4A1 Missense_Mutation p.V115D 0.54 deleterious(0) probably_damaging(0.982) TCGA-G4-6295-01 7 100686859 100686859 G A MUC17 Silent p.P4054P 0.46 TCGA-G4-6295-01 7 110764526 110764526 G A LRRN3 Silent p.A566A 0.42 TCGA-G4-6295-01 7 142985533 142985533 C T CASP2 5'UTR 0.25 TCGA-G4-6295-01 7 150741134 150741134 G C ABCB8 Silent p.T614T 0.20 TCGA-G4-6295-01 7 48315045 48315045 G C ABCA13 Missense_Mutation p.V1928L 0.17 benign(0.015) TCGA-G4-6295-01 7 81388122 81388122 T C HGF Splice_Site p.X85_splice 0.29 TCGA-G4-6295-01 7 92730612 92730612 C A SAMD9 3'UTR 0.27 TCGA-G4-6295-01 7 94230110 94230110 T C SGCE Silent p.L295L 0.20 TCGA-G4-6295-01 7 97821545 97821545 A C LMTK2 Missense_Mutation p.T590P 0.19 tolerated(0.09) benign(0.002) TCGA-G4-6295-01 8 101117712 101117712 G T RGS22 Intron 0.18 TCGA-G4-6295-01 8 102585927 102585927 A C GRHL2 Missense_Mutation p.K256Q 0.08 tolerated(0.08) possibly_damaging(0.876) TCGA-G4-6295-01 8 116616253 116616253 C G TRPS1 Missense_Mutation p.S648T 0.58 tolerated_low_confidence(0.34) benign(0.002) TCGA-G4-6295-01 8 133142217 133142217 G T KCNQ3 Missense_Mutation p.D637E 0.16 deleterious(0) probably_damaging(0.999) TCGA-G4-6295-01 8 134034297 134034297 G T TG Missense_Mutation p.G2313V 0.12 deleterious(0) possibly_damaging(0.493) TCGA-G4-6295-01 8 143623561 143623561 C T BAI1 Silent p.D1322D 0.11 TCGA-G4-6295-01 8 145138108 145138108 G C GPAA1 Missense_Mutation p.E52D 0.12 deleterious(0.01) benign(0.383) TCGA-G4-6295-01 8 145659545 145659545 A T TONSL Missense_Mutation p.L1068Q 0.15 deleterious(0.03) probably_damaging(0.913) TCGA-G4-6295-01 8 59403958 59403958 T C CYP7A1 3'UTR 0.11 TCGA-G4-6295-01 8 67514727 67514727 C T MYBL1 Missense_Mutation p.D18N 0.71 deleterious(0) probably_damaging(0.97) TCGA-G4-6295-01 8 68004046 68004046 T G CSPP1 Intron 0.16 TCGA-G4-6295-01 8 77767594 77767594 G T ZFHX4 Missense_Mutation p.A2813S 0.13 probably_damaging(0.993) TCGA-G4-6295-01 8 92231239 92231239 G A LRRC69 3'Flank 0.12 TCGA-G4-6295-01 9 131256878 131256878 A T ODF2 Missense_Mutation p.Q614H 0.27 tolerated(0.18) benign(0.211) TCGA-G4-6295-01 9 136341425 136341425 G A SLC2A6 Missense_Mutation p.R166C 0.40 deleterious(0.02) probably_damaging(1) TCGA-G4-6295-01 9 35106262 35106262 G A FAM214B Missense_Mutation p.P402L 0.38 deleterious(0.01) possibly_damaging(0.771) TCGA-G4-6295-01 9 6329033 6329033 C T TPD52L3 3'UTR 0.27 TCGA-G4-6295-01 9 97365749 97365749 T C FBP1 Missense_Mutation p.I311V 0.30 deleterious(0.02) possibly_damaging(0.869) TCGA-G4-6295-01 9 99227746 99227746 C T HABP4 Nonsense_Mutation p.R214* 0.44 TCGA-G4-6295-01 X 125299423 125299423 G A DCAF12L2 Missense_Mutation p.T162M 0.49 deleterious(0) probably_damaging(0.999) TCGA-G4-6295-01 X 147919174 147919174 A T AFF2 Missense_Mutation p.M364L 0.41 tolerated(0.08) possibly_damaging(0.59) TCGA-G4-6295-01 X 44109461 44109461 G A EFHC2 Silent p.L279L 0.59 TCGA-G4-6295-01 X 63411996 63411996 C A AMER1 Nonsense_Mutation p.E391* 0.36 TCGA-G4-6295-01 X 64959009 64959009 C T MSN Missense_Mutation p.R508C 0.43 deleterious(0.01) probably_damaging(1) TCGA-G4-6297-01 10 101514376 101514376 C T CUTC Missense_Mutation p.S231L 0.21 deleterious(0) probably_damaging(0.993) TCGA-G4-6297-01 10 103988637 103988637 C A ELOVL3 Nonsense_Mutation p.Y147* 0.31 TCGA-G4-6297-01 11 108384457 108384457 T A EXPH5 Nonsense_Mutation p.K593* 0.09 TCGA-G4-6297-01 11 126294699 126294699 C T KIRREL3 Missense_Mutation p.E705K 0.44 deleterious(0.04) probably_damaging(0.986) TCGA-G4-6297-01 11 3687295 3687295 G A CHRNA10 3'UTR 0.14 TCGA-G4-6297-01 11 60540904 60540904 G C MS4A15 Missense_Mutation p.A149P 0.42 tolerated(0.19) possibly_damaging(0.875) TCGA-G4-6297-01 11 60893266 60893266 C T CD5 Silent p.N481N 0.14 TCGA-G4-6297-01 11 62648766 62648766 G A SLC3A2 Missense_Mutation p.G193S 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-G4-6297-01 11 68852702 68852703 - T TPCN2 Frame_Shift_Ins p.G597Wfs*6 0.29 TCGA-G4-6297-01 11 78383150 78383150 G A TENM4 Silent p.Y1907Y 0.49 TCGA-G4-6297-01 11 7982152 7982152 C T NLRP10 Missense_Mutation p.R336H 0.49 tolerated(0.08) benign(0.001) TCGA-G4-6297-01 11 92257879 92257879 C T FAT3 Silent p.G1124G 0.12 TCGA-G4-6297-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.70 deleterious(0.03) possibly_damaging(0.644) TCGA-G4-6297-01 12 40677839 40677839 A G LRRK2 Missense_Mutation p.S802G 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-G4-6297-01 12 41967381 41967381 G A PDZRN4 Missense_Mutation p.E934K 0.31 deleterious(0) probably_damaging(0.994) TCGA-G4-6297-01 12 56811793 56811793 C T TIMELESS Splice_Site p.X1152_splice 0.10 TCGA-G4-6297-01 12 95486597 95486599 CTT - FGD6 In_Frame_Del p.E1208del 0.10 TCGA-G4-6297-01 13 31036699 31036699 C T HMGB1 Silent p.A149A 0.47 TCGA-G4-6297-01 13 51825614 51825614 C T FAM124A Silent p.S73S 0.32 TCGA-G4-6297-01 13 98043681 98043681 A T MBNL2 3'UTR 0.06 TCGA-G4-6297-01 14 52186781 52186781 C T FRMD6 Nonsense_Mutation p.Q345* 0.50 TCGA-G4-6297-01 14 70171433 70171433 A G KIAA0247 Silent p.P144P 0.58 TCGA-G4-6297-01 14 94503760 94503760 G A OTUB2 Missense_Mutation p.C13Y 0.43 tolerated(0.84) benign(0.067) TCGA-G4-6297-01 15 32460170 32460170 G A CHRNA7 Silent p.A369A 0.13 TCGA-G4-6297-01 15 35044812 35044812 C T GJD2 Missense_Mutation p.R278H 0.11 tolerated(0.12) benign(0.023) TCGA-G4-6297-01 15 43579785 43579785 G T TGM7 Missense_Mutation p.S214Y 0.36 deleterious(0) probably_damaging(0.959) TCGA-G4-6297-01 15 58920057 58920057 G A ADAM10 Missense_Mutation p.P401L 0.39 deleterious(0) probably_damaging(0.997) TCGA-G4-6297-01 16 30455846 30455846 C T SEPHS2 Silent p.A401A 0.46 TCGA-G4-6297-01 17 30228689 30228689 G C UTP6 5'UTR 0.47 TCGA-G4-6297-01 17 5264712 5264712 C T RABEP1 Silent p.D435D 0.58 TCGA-G4-6297-01 17 7578503 7578503 C T TP53 Missense_Mutation p.V143M 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6297-01 18 30254632 30254632 T C KLHL14 Silent p.P625P 0.46 TCGA-G4-6297-01 19 39879614 39879614 C A PAF1 Missense_Mutation p.E203D 0.15 tolerated(0.05) possibly_damaging(0.734) TCGA-G4-6297-01 19 42507728 42507728 C T GRIK5 Missense_Mutation p.E791K 0.15 deleterious(0.03) possibly_damaging(0.783) TCGA-G4-6297-01 19 4538274 4538274 A G LRG1 Missense_Mutation p.L241P 0.07 deleterious(0) probably_damaging(0.996) TCGA-G4-6297-01 19 50944242 50944242 C T MYBPC2 Silent p.Y226Y 0.34 TCGA-G4-6297-01 19 57325574 57325574 T C PEG3 Silent p.E1412E 0.08 TCGA-G4-6297-01 19 58050208 58050208 G A ZNF549 Silent p.P612P 0.17 TCGA-G4-6297-01 1 12835714 12835714 C T PRAMEF12 Missense_Mutation p.R106W 0.25 deleterious(0.02) probably_damaging(0.988) TCGA-G4-6297-01 1 17740090 17740090 G A RCC2 Missense_Mutation p.R384C 0.18 deleterious(0) probably_damaging(0.98) TCGA-G4-6297-01 1 205897160 205897160 G A SLC26A9 Missense_Mutation p.S324L 0.36 tolerated(1) benign(0.004) TCGA-G4-6297-01 1 244641274 244641274 C G C1orf101 Silent p.G85G 0.31 TCGA-G4-6297-01 1 25890210 25890210 G A LDLRAP1 Silent p.T225T 0.23 TCGA-G4-6297-01 1 3348615 3348615 G A PRDM16 Missense_Mutation p.E1203K 0.10 deleterious(0.02) probably_damaging(0.947) TCGA-G4-6297-01 1 34035136 34035136 C A CSMD2 Nonsense_Mutation p.G2659* 0.19 TCGA-G4-6297-01 1 40211144 40211144 G A PPIE Missense_Mutation p.R161H 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-G4-6297-01 1 46978130 46978130 C T DMBX1 Silent p.H366H 0.20 TCGA-G4-6297-01 1 49128865 49128865 C T AGBL4 Missense_Mutation p.R228Q 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6297-01 1 68512917 68512917 C T DIRAS3 Missense_Mutation p.A22T 0.37 tolerated(1) benign(0.001) TCGA-G4-6297-01 20 31609532 31609532 T A BPIFB2 Missense_Mutation p.L421H 0.59 deleterious(0) probably_damaging(1) TCGA-G4-6297-01 20 61939362 61939362 A G COL20A1 Missense_Mutation p.D232G 0.05 deleterious(0.03) possibly_damaging(0.582) TCGA-G4-6297-01 20 870938 870938 G A ANGPT4 Missense_Mutation p.T128M 0.47 deleterious(0) benign(0.165) TCGA-G4-6297-01 21 28214747 28214747 G A ADAMTS1 Missense_Mutation p.R330W 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6297-01 21 32201899 32201899 G T KRTAP7-1 RNA 0.17 TCGA-G4-6297-01 21 46875643 46875643 C T COL18A1 Missense_Mutation p.R67W 0.19 unknown(0) TCGA-G4-6297-01 22 30857633 30857633 C T SEC14L3 Missense_Mutation p.V274M 0.22 deleterious(0.04) benign(0.421) TCGA-G4-6297-01 22 37770535 37770535 G A ELFN2 Missense_Mutation p.T347M 0.54 deleterious(0.04) probably_damaging(0.919) TCGA-G4-6297-01 2 11767127 11767127 G A GREB1 Missense_Mutation p.R1449Q 0.25 deleterious(0.04) benign(0.04) TCGA-G4-6297-01 2 119915203 119915203 C T C1QL2 Missense_Mutation p.D215N 0.07 deleterious(0) possibly_damaging(0.832) TCGA-G4-6297-01 2 179586723 179586723 C A TTN Missense_Mutation p.R7556L 0.36 TCGA-G4-6297-01 2 179622412 179622412 A T TTN Missense_Mutation p.V3512D 0.37 TCGA-G4-6297-01 2 185801272 185801272 C T ZNF804A Silent p.N383N 0.29 TCGA-G4-6297-01 2 207007448 207007455 GGTGTCAG - NDUFS1 Frame_Shift_Del p.S377Ffs*4 0.19 TCGA-G4-6297-01 2 207174701 207174701 C A ZDBF2 Missense_Mutation p.L1817I 0.14 tolerated(0.07) benign(0.364) TCGA-G4-6297-01 2 233398813 233398813 G A CHRND Missense_Mutation p.R407Q 0.11 deleterious(0.03) probably_damaging(1) TCGA-G4-6297-01 2 239186363 239186363 G A PER2 Missense_Mutation p.P72L 0.12 tolerated(0.12) benign(0.232) TCGA-G4-6297-01 2 32704541 32704541 G T BIRC6 Missense_Mutation p.A2422S 0.09 benign(0.003) TCGA-G4-6297-01 2 32704542 32704542 C T BIRC6 Missense_Mutation p.A2422V 0.09 benign(0.039) TCGA-G4-6297-01 2 46986776 46986776 C T SOCS5 Silent p.L369L 0.29 TCGA-G4-6297-01 2 5833186 5833186 C T SOX11 Silent p.A111A 0.08 TCGA-G4-6297-01 2 88828907 88828907 T C TEX37 Missense_Mutation p.L153P 0.30 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-G4-6297-01 2 99013327 99013327 C T CNGA3 Missense_Mutation p.T565M 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6297-01 3 108218986 108218986 C T MYH15 Missense_Mutation p.A179T 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6297-01 3 121126141 121126141 G A STXBP5L Missense_Mutation p.R904Q 0.27 tolerated(0.22) benign(0.027) TCGA-G4-6297-01 3 142142403 142142403 G A XRN1 Missense_Mutation p.R237W 0.35 deleterious(0) probably_damaging(0.937) TCGA-G4-6297-01 3 178916890 178916890 C T PIK3CA Missense_Mutation p.R93W 0.24 deleterious(0) probably_damaging(0.997) TCGA-G4-6297-01 3 183963335 183963335 C T ALG3 Missense_Mutation p.R122H 0.30 tolerated(0.07) benign(0.079) TCGA-G4-6297-01 3 21478528 21478528 G T ZNF385D Missense_Mutation p.L203I 0.05 tolerated(0.21) possibly_damaging(0.899) TCGA-G4-6297-01 3 38182792 38182792 C T MYD88 3'UTR 0.14 TCGA-G4-6297-01 3 97887843 97887843 A T OR5H15 Missense_Mutation p.Q100H 0.27 deleterious(0) probably_damaging(0.992) TCGA-G4-6297-01 4 104640518 104640518 G A TACR3 Silent p.I105I 0.22 TCGA-G4-6297-01 4 128628055 128628055 G A INTU Silent p.P734P 0.20 TCGA-G4-6297-01 4 177084417 177084417 C T WDR17 Missense_Mutation p.A1012V 0.15 tolerated(0.11) probably_damaging(0.995) TCGA-G4-6297-01 4 46126069 46126069 C A GABRG1 5'UTR 0.46 TCGA-G4-6297-01 4 53731539 53731539 A C RASL11B Missense_Mutation p.N105T 0.16 tolerated(0.24) benign(0.006) TCGA-G4-6297-01 4 81952583 81952583 G T BMP3 Nonsense_Mutation p.E49* 0.19 TCGA-G4-6297-01 5 112174475 112174475 C T APC Nonsense_Mutation p.Q1062* 0.27 TCGA-G4-6297-01 5 112175756 112175756 T - APC Frame_Shift_Del p.L1489Yfs*18 0.19 TCGA-G4-6297-01 5 140564230 140564230 C T PCDHB16 Missense_Mutation p.S699L 0.22 deleterious_low_confidence(0.01) benign(0.021) TCGA-G4-6297-01 5 169506149 169506149 G A DOCK2 Missense_Mutation p.R1722Q 0.21 tolerated_low_confidence(0.3) benign(0.003) TCGA-G4-6297-01 5 32774840 32774840 C T NPR3 Silent p.H362H 0.11 TCGA-G4-6297-01 5 33616023 33616023 C T ADAMTS12 Silent p.K766K 0.23 TCGA-G4-6297-01 6 110146457 110146457 C T FIG4 Missense_Mutation p.R905C 0.23 deleterious(0) probably_damaging(0.964) TCGA-G4-6297-01 6 26158688 26158688 G A HIST1H2BD Silent p.T97T 0.21 TCGA-G4-6297-01 6 26217694 26217695 - A HIST1H2AE 3'UTR 0.16 TCGA-G4-6297-01 6 32006292 32006292 G A CYP21A2 Silent p.P31P 0.22 TCGA-G4-6297-01 6 7298980 7298980 G A SSR1 Missense_Mutation p.T207I 0.16 deleterious(0.03) probably_damaging(0.937) TCGA-G4-6297-01 7 101758485 101758485 A C CUX1 Splice_Site p.X214_splice 0.21 TCGA-G4-6297-01 7 11142270 11142270 C T PHF14 3'UTR 0.27 TCGA-G4-6297-01 7 32110108 32110108 G A PDE1C Intron 0.24 TCGA-G4-6297-01 7 42088289 42088289 G A GLI3 Silent p.S160S 0.30 TCGA-G4-6297-01 7 96653868 96653868 G T DLX5 Missense_Mutation p.T23K 0.47 tolerated(0.58) benign(0.062) TCGA-G4-6297-01 8 10469157 10469157 C T RP1L1 Silent p.A817A 0.25 TCGA-G4-6297-01 8 124096557 124096557 C T TBC1D31 Missense_Mutation p.R166C 0.21 deleterious(0.03) possibly_damaging(0.677) TCGA-G4-6297-01 8 133829668 133829668 C T PHF20L1 Missense_Mutation p.P486L 0.20 tolerated(0.15) benign(0.013) TCGA-G4-6297-01 8 13424837 13424837 C T C8orf48 Missense_Mutation p.R113W 0.05 tolerated(0.1) benign(0.005) TCGA-G4-6297-01 8 145110778 145110778 C A OPLAH Missense_Mutation p.V721L 0.19 tolerated(0.28) benign(0.029) TCGA-G4-6297-01 8 15978072 15978072 G A MSR1 Silent p.H359H 0.31 TCGA-G4-6297-01 9 111617853 111617853 C T ACTL7B Missense_Mutation p.V120M 0.55 deleterious(0) probably_damaging(0.999) TCGA-G4-6297-01 X 100088198 100088198 C T CSTF2 Nonsense_Mutation p.R413* 0.35 TCGA-G4-6297-01 X 107408124 107408124 C G COL4A6 Missense_Mutation p.G1319A 0.31 probably_damaging(1) TCGA-G4-6297-01 X 132159632 132159632 C A USP26 Missense_Mutation p.D873Y 0.32 deleterious(0.01) possibly_damaging(0.871) TCGA-G4-6297-01 X 150791447 150791447 C A PASD1 Missense_Mutation p.L153I 0.15 tolerated(0.39) benign(0.33) TCGA-G4-6297-01 X 1510867 1510867 G T SLC25A6 Missense_Mutation p.F12L 0.37 tolerated(0.4) benign(0.007) TCGA-G4-6297-01 X 35985795 35985795 C T CXorf22 Missense_Mutation p.R554C 0.04 tolerated(0.19) benign(0.006) TCGA-G4-6297-01 X 48762012 48762012 C T SLC35A2 Intron 0.31 TCGA-G4-6298-01 10 114710652 114710652 C A TCF7L2 Nonsense_Mutation p.S46* 0.30 TCGA-G4-6298-01 10 48426594 48426594 G A GDF10 Silent p.S471S 0.35 TCGA-G4-6298-01 11 102666323 102666323 C T MMP1 Missense_Mutation p.R214H 0.24 tolerated(0.06) benign(0.131) TCGA-G4-6298-01 11 119212463 119212463 C T MFRP Missense_Mutation p.C512Y 0.63 deleterious(0) probably_damaging(1) TCGA-G4-6298-01 11 55735244 55735244 G C OR10AG1 Missense_Mutation p.C232W 0.62 deleterious(0) probably_damaging(1) TCGA-G4-6298-01 11 58170393 58170393 G T OR5B3 Missense_Mutation p.L164I 0.29 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-G4-6298-01 11 61404335 61404335 C T RPLP0P2 RNA 0.56 TCGA-G4-6298-01 11 64662771 64662772 TG - ATG2A Frame_Shift_Del p.T1857Sfs*14 0.18 TCGA-G4-6298-01 11 72308596 72308596 G C PDE2A Missense_Mutation p.P131A 0.31 tolerated_low_confidence(0.58) benign(0.001) TCGA-G4-6298-01 11 7981943 7981943 G A NLRP10 Missense_Mutation p.R406W 0.24 tolerated(0.24) benign(0.015) TCGA-G4-6298-01 12 103232875 103232875 G A PAH 3'UTR 0.36 TCGA-G4-6298-01 12 104713264 104713264 G A TXNRD1 Missense_Mutation p.G297D 0.25 deleterious(0.01) probably_damaging(1) TCGA-G4-6298-01 12 108006595 108006595 C T BTBD11 Silent p.D616D 0.37 TCGA-G4-6298-01 12 331789 331789 C T SLC6A13 Missense_Mutation p.R475H 0.27 deleterious(0.02) probably_damaging(0.977) TCGA-G4-6298-01 12 78452822 78452822 C T NAV3 Nonsense_Mutation p.R855* 0.32 TCGA-G4-6298-01 13 38156507 38156507 C T POSTN Missense_Mutation p.R463H 0.25 deleterious(0.03) probably_damaging(0.988) TCGA-G4-6298-01 14 36988636 36988636 T - NKX2-1 Intron 0.11 TCGA-G4-6298-01 14 42356700 42356700 G A LRFN5 Missense_Mutation p.R291H 0.25 tolerated(0.18) benign(0.279) TCGA-G4-6298-01 14 50555839 50555839 C A C14orf183 Missense_Mutation p.Q149H 0.24 tolerated_low_confidence(0.29) benign(0.03) TCGA-G4-6298-01 15 27193443 27193443 C A GABRA5 3'UTR 0.29 TCGA-G4-6298-01 15 29444000 29444000 G A FAM189A1 Silent p.I189I 0.27 TCGA-G4-6298-01 15 40632172 40632172 G A C15orf52 Silent p.D63D 0.23 TCGA-G4-6298-01 15 52506798 52506798 A G MYO5C Splice_Site p.X1348_splice 0.28 TCGA-G4-6298-01 15 58861012 58861012 C T LIPC Nonsense_Mutation p.R496* 0.30 TCGA-G4-6298-01 16 2331173 2331173 G A ABCA3 Missense_Mutation p.A1405V 0.32 tolerated(0.1) benign(0.011) TCGA-G4-6298-01 16 29096090 29096090 G A RRN3P2 Splice_Site 0.27 TCGA-G4-6298-01 16 3293550 3293550 G A MEFV Missense_Mutation p.P646L 0.32 tolerated(0.05) possibly_damaging(0.612) TCGA-G4-6298-01 16 70942301 70942301 G A HYDIN Silent p.G2750G 0.25 TCGA-G4-6298-01 17 18882884 18882884 G A FAM83G Missense_Mutation p.R265W 0.44 deleterious(0) probably_damaging(0.999) TCGA-G4-6298-01 17 33457361 33457361 G A FNDC8 Missense_Mutation p.V295M 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6298-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.29 deleterious(0) probably_damaging(0.994) TCGA-G4-6298-01 17 39551786 39551786 G A KRT31 Silent p.N226N 0.25 TCGA-G4-6298-01 17 42162445 42162445 C T HDAC5 Missense_Mutation p.R711Q 0.33 deleterious(0) possibly_damaging(0.863) TCGA-G4-6298-01 17 68174266 68174266 G T KCNJ2 3'UTR 0.26 TCGA-G4-6298-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.44 tolerated(0.11) benign(0.308) TCGA-G4-6298-01 17 77076425 77076425 C A ENGASE Silent p.I234I 0.35 TCGA-G4-6298-01 18 3457366 3457366 T G TGIF1 Missense_Mutation p.C212G 0.36 deleterious(0) probably_damaging(0.963) TCGA-G4-6298-01 19 38074735 38074735 G A ZNF571 Intron 0.16 TCGA-G4-6298-01 19 45515255 45515255 G A RELB Silent p.P75P 0.37 TCGA-G4-6298-01 19 50017498 50017498 G T FCGRT Missense_Mutation p.C119F 0.31 deleterious(0) probably_damaging(0.99) TCGA-G4-6298-01 19 50463540 50463540 G - SIGLEC11 Frame_Shift_Del p.P200Lfs*38 0.11 TCGA-G4-6298-01 19 50940751 50940751 G A MYBPC2 Missense_Mutation p.G162E 0.30 tolerated(0.3) benign(0.028) TCGA-G4-6298-01 19 51330304 51330304 C T KLK15 Missense_Mutation p.R104H 0.33 tolerated(0.07) benign(0.027) TCGA-G4-6298-01 19 8595163 8595163 G A MYO1F Missense_Mutation p.R749W 0.26 deleterious(0) possibly_damaging(0.892) TCGA-G4-6298-01 19 9064080 9064080 G T MUC16 Missense_Mutation p.S7789Y 0.31 unknown(0) TCGA-G4-6298-01 1 10239594 10239594 C T UBE4B Missense_Mutation p.T1274M 0.40 deleterious(0.04) probably_damaging(0.915) TCGA-G4-6298-01 1 11273503 11273503 G A MTOR Missense_Mutation p.R1080C 0.44 deleterious(0.02) possibly_damaging(0.791) TCGA-G4-6298-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.39 deleterious(0.01) benign(0.045) TCGA-G4-6298-01 1 156035750 156035750 G A RAB25 Missense_Mutation p.R31Q 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-G4-6298-01 1 19428053 19428053 C T UBR4 Silent p.P4328P 0.55 TCGA-G4-6298-01 1 220192401 220192401 G A EPRS Missense_Mutation p.T457M 0.17 deleterious(0) probably_damaging(0.997) TCGA-G4-6298-01 1 32950810 32950810 G A ZBTB8B Missense_Mutation p.V427I 0.36 tolerated(0.29) benign(0.003) TCGA-G4-6298-01 1 5967181 5967181 G A NPHP4 Silent p.A535A 0.48 TCGA-G4-6298-01 20 24988455 24988455 G A ACSS1 Silent p.I671I 0.21 TCGA-G4-6298-01 20 57415811 57415811 G A RP4-806M20.3 5'Flank 0.21 TCGA-G4-6298-01 21 15352085 15352085 C T ANKRD20A11P RNA 0.30 TCGA-G4-6298-01 21 45821594 45821594 C T TRPM2 Silent p.P784P 0.28 TCGA-G4-6298-01 21 47574129 47574129 C T FTCD Missense_Mutation p.V58M 0.32 deleterious(0) probably_damaging(0.968) TCGA-G4-6298-01 22 18273774 18273774 C T MICAL3 Missense_Mutation p.M1938I 0.25 probably_damaging(0.968) TCGA-G4-6298-01 22 22843579 22843579 C T ZNF280B Missense_Mutation p.V49M 0.33 tolerated(0.22) benign(0.256) TCGA-G4-6298-01 22 28692259 28692259 T C TTC28 Missense_Mutation p.K287R 0.30 tolerated(0.22) benign(0.031) TCGA-G4-6298-01 22 31478973 31478973 C T SMTN Intron 0.47 TCGA-G4-6298-01 22 36960732 36960732 C T CACNG2 Missense_Mutation p.R213H 0.54 tolerated(0.24) probably_damaging(0.976) TCGA-G4-6298-01 2 102034007 102034007 G A RFX8 Missense_Mutation p.S164F 0.26 tolerated(0.13) probably_damaging(0.996) TCGA-G4-6298-01 2 141294168 141294168 C A LRP1B Nonsense_Mutation p.E2542* 0.27 TCGA-G4-6298-01 2 159313011 159313011 C T CCDC148 5'UTR 0.26 TCGA-G4-6298-01 2 168725848 168725848 C T B3GALT1 Missense_Mutation p.T100M 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6298-01 2 182347350 182347350 G A ITGA4 Missense_Mutation p.R338K 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-G4-6298-01 2 219887050 219887050 G A CCDC108 Missense_Mutation p.T941M 0.35 tolerated(0.07) benign(0.038) TCGA-G4-6298-01 2 237172840 237172840 G A ASB18 Missense_Mutation p.A50V 0.28 deleterious(0.01) possibly_damaging(0.838) TCGA-G4-6298-01 2 238274402 238274402 G A COL6A3 Missense_Mutation p.T1926M 0.31 probably_damaging(0.985) TCGA-G4-6298-01 2 241682386 241682386 C T KIF1A Silent p.S1200S 0.29 TCGA-G4-6298-01 2 3660953 3660953 C T COLEC11 Silent p.V75V 0.25 TCGA-G4-6298-01 2 3727534 3727534 C T ALLC Missense_Mutation p.T83M 0.13 tolerated(0.08) benign(0.254) TCGA-G4-6298-01 2 5840844 5840844 C T SOX11 3'UTR 0.28 TCGA-G4-6298-01 2 63380078 63380078 C T WDPCP Missense_Mutation p.G721R 0.25 tolerated(0.11) benign(0.379) TCGA-G4-6298-01 3 142840947 142840947 G T CHST2 Missense_Mutation p.G430V 0.25 tolerated(0.4) benign(0.031) TCGA-G4-6298-01 3 184018089 184018089 C T PSMD2 Nonsense_Mutation p.R72* 0.34 TCGA-G4-6298-01 3 186510722 186510722 G A RFC4 Missense_Mutation p.P142L 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6298-01 3 51979569 51979569 C T PARP3 Missense_Mutation p.T314M 0.24 tolerated(0.34) benign(0.002) TCGA-G4-6298-01 5 112175149 112175150 - AT APC Frame_Shift_Ins p.G1288* 0.37 TCGA-G4-6298-01 5 112770203 112770203 C T TSSK1B Missense_Mutation p.E112K 0.63 tolerated(0.93) benign(0.013) TCGA-G4-6298-01 5 140571998 140571998 G T PCDHB10 5'UTR 0.55 TCGA-G4-6298-01 5 31504685 31504685 G A DROSHA Missense_Mutation p.H549Y 0.60 deleterious(0.01) probably_damaging(0.989) TCGA-G4-6298-01 5 36035763 36035763 G A UGT3A2 3'UTR 0.62 TCGA-G4-6298-01 6 105404993 105404993 A G LIN28B 5'UTR 0.08 TCGA-G4-6298-01 6 109763755 109763755 G A SMPD2 Missense_Mutation p.E140K 0.26 deleterious(0) possibly_damaging(0.88) TCGA-G4-6298-01 6 127794262 127794262 G A SOGA3 3'UTR 0.31 TCGA-G4-6298-01 6 3154153 3154153 C T TUBB2A Missense_Mutation p.A428T 0.26 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-G4-6298-01 6 89977396 89977396 A C GABRR2 Splice_Site p.X246_splice 0.34 TCGA-G4-6298-01 7 1732959 1732959 C T AC074389.6 Silent p.S191S 0.33 TCGA-G4-6298-01 7 2403339 2403339 C T EIF3B Missense_Mutation p.R315C 0.21 deleterious(0.04) possibly_damaging(0.714) TCGA-G4-6298-01 7 47851502 47851502 C T PKD1L1 Silent p.T2498T 0.30 TCGA-G4-6298-01 7 4827357 4827357 C T AP5Z1 Silent p.H468H 0.30 TCGA-G4-6298-01 7 48550748 48550748 T A ABCA13 Silent p.T4531T 0.23 TCGA-G4-6298-01 7 96653867 96653867 C T DLX5 Silent p.T23T 0.21 TCGA-G4-6298-01 8 101074910 101074910 A G RGS22 Missense_Mutation p.S475P 0.48 tolerated(0.27) possibly_damaging(0.548) TCGA-G4-6298-01 8 105509599 105509599 C T LRP12 Missense_Mutation p.R394H 0.27 tolerated(0.14) probably_damaging(0.998) TCGA-G4-6298-01 8 113308176 113308176 C T CSMD3 Missense_Mutation p.G2834R 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-G4-6298-01 8 32621633 32621633 C T NRG1 Missense_Mutation p.R551W 0.33 deleterious(0.03) probably_damaging(0.994) TCGA-G4-6298-01 8 88885695 88885695 G A DCAF4L2 Missense_Mutation p.P169S 0.22 deleterious(0.05) benign(0.02) TCGA-G4-6298-01 8 88886289 88886289 G A DCAF4L2 5'UTR 0.18 TCGA-G4-6298-01 9 100190949 100190949 G A TDRD7 Missense_Mutation p.G68R 0.21 deleterious(0) probably_damaging(0.999) TCGA-G4-6298-01 9 107361164 107361164 G T OR13C5 Missense_Mutation p.F177L 0.28 tolerated(0.14) benign(0.058) TCGA-G4-6298-01 9 130507316 130507316 C T SH2D3C Missense_Mutation p.A443T 0.18 tolerated(0.38) benign(0.001) TCGA-G4-6298-01 9 131468080 131468080 G T PKN3 Silent p.R111R 0.26 TCGA-G4-6298-01 9 139908712 139908712 C T ABCA2 Missense_Mutation p.R1383H 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6298-01 9 21334512 21334513 - A KLHL9 Frame_Shift_Ins p.S116Ffs*3 0.22 TCGA-G4-6298-01 9 27950618 27950618 C T LINGO2 Missense_Mutation p.V18M 0.27 tolerated(0.24) benign(0.1) TCGA-G4-6298-01 9 35092236 35092236 G A PIGO Silent p.L550L 0.21 TCGA-G4-6298-01 X 20152120 20152120 C A EIF1AX Missense_Mutation p.W70C 0.50 deleterious(0) probably_damaging(1) TCGA-G4-6298-01 X 63411378 63411378 C A AMER1 Nonsense_Mutation p.E597* 0.64 TCGA-G4-6299-01 10 101816848 101816848 G A CPN1 Silent p.C311C 0.30 TCGA-G4-6299-01 10 103908960 103908960 C T PPRC1 Missense_Mutation p.R1589C 0.46 deleterious(0) possibly_damaging(0.898) TCGA-G4-6299-01 10 104595063 104595063 C T CYP17A1 Silent p.A128A 0.31 TCGA-G4-6299-01 10 124351950 124351950 C T DMBT1 Missense_Mutation p.T780M 0.36 tolerated(0.23) unknown(0) TCGA-G4-6299-01 10 124909503 124909503 C T HMX2 Missense_Mutation p.P229L 0.60 deleterious(0) probably_damaging(0.983) TCGA-G4-6299-01 10 16866961 16866961 A G CUBN 3'UTR 0.39 TCGA-G4-6299-01 10 43882237 43882237 C A HNRNPF Missense_Mutation p.G366W 0.23 deleterious(0) probably_damaging(0.996) TCGA-G4-6299-01 10 50574410 50574410 A G DRGX Silent p.S186S 0.31 TCGA-G4-6299-01 10 63852155 63852155 C T ARID5B Missense_Mutation p.P978L 0.15 deleterious(0.01) benign(0.165) TCGA-G4-6299-01 10 73567646 73567646 G C CDH23 Silent p.V628V 0.31 TCGA-G4-6299-01 10 99338007 99338007 G A ANKRD2 Missense_Mutation p.R94H 0.35 deleterious(0) probably_damaging(0.977) TCGA-G4-6299-01 11 103027468 103027468 A G DYNC2H1 Missense_Mutation p.T1366A 0.62 benign(0) TCGA-G4-6299-01 11 104868179 104868179 G A CASP5 Silent p.F392F 0.14 TCGA-G4-6299-01 11 104868182 104868182 G A CASP5 Silent p.I391I 0.15 TCGA-G4-6299-01 11 113701594 113701594 C T USP28 Missense_Mutation p.R302H 0.46 tolerated(1) benign(0.004) TCGA-G4-6299-01 11 128856491 128856491 A G ARHGAP32 Silent p.G443G 0.08 TCGA-G4-6299-01 11 18042478 18042478 G T TPH1 3'UTR 0.34 TCGA-G4-6299-01 11 26663547 26663547 A G ANO3 Missense_Mutation p.H749R 0.08 tolerated(0.11) probably_damaging(0.999) TCGA-G4-6299-01 11 4674564 4674564 C T OR51E1 Missense_Mutation p.R270C 0.33 tolerated(0.14) possibly_damaging(0.466) TCGA-G4-6299-01 11 4936384 4936384 T C OR51G2 Silent p.R170R 0.34 TCGA-G4-6299-01 11 55587215 55587215 A C OR5D18 Missense_Mutation p.N37T 0.27 tolerated(1) benign(0) TCGA-G4-6299-01 11 56020510 56020510 A G OR5T3 Missense_Mutation p.T279A 0.45 tolerated(0.24) benign(0.034) TCGA-G4-6299-01 11 59225156 59225156 G A OR4D6 Silent p.T241T 0.20 TCGA-G4-6299-01 11 6007209 6007209 G A OR52L1 Missense_Mutation p.R318C 0.37 deleterious(0) possibly_damaging(0.863) TCGA-G4-6299-01 11 607682 607682 G C PHRF1 Silent p.G741G 0.50 TCGA-G4-6299-01 11 62105465 62105465 G C ASRGL1 Missense_Mutation p.V6L 0.10 tolerated(0.24) benign(0.35) TCGA-G4-6299-01 11 62287544 62287544 T G AHNAK Missense_Mutation p.K4782T 0.21 probably_damaging(0.999) TCGA-G4-6299-01 11 62367689 62367689 G A MTA2 Missense_Mutation p.R47W 0.22 deleterious(0) probably_damaging(0.938) TCGA-G4-6299-01 11 6261519 6261519 T A CNGA4 Missense_Mutation p.N165K 0.42 deleterious(0) possibly_damaging(0.886) TCGA-G4-6299-01 11 6578497 6578497 C T DNHD1 Missense_Mutation p.R2658W 0.17 probably_damaging(1) TCGA-G4-6299-01 11 67173129 67173129 C G TBC1D10C Missense_Mutation p.Q142E 0.24 deleterious(0) probably_damaging(0.994) TCGA-G4-6299-01 11 67274933 67274933 G A CDK2AP2 Silent p.S72S 0.43 TCGA-G4-6299-01 11 68522450 68522450 G A CPT1A 3'UTR 0.39 TCGA-G4-6299-01 11 69972275 69972275 C T ANO1 Silent p.C357C 0.42 TCGA-G4-6299-01 11 88300813 88300815 TCT - GRM5 In_Frame_Del p.K679del 0.31 TCGA-G4-6299-01 11 88386358 88386358 G A GRM5 Silent p.S375S 0.15 TCGA-G4-6299-01 12 108685924 108685924 G T CMKLR1 Nonsense_Mutation p.C272* 0.44 TCGA-G4-6299-01 12 122404882 122404882 T C WDR66 Silent p.A838A 0.08 TCGA-G4-6299-01 12 27128475 27128475 G T TM7SF3 Missense_Mutation p.N468K 0.27 tolerated(0.07) benign(0.345) TCGA-G4-6299-01 12 30833525 30833525 A G IPO8 Missense_Mutation p.I177T 0.10 tolerated(0.24) benign(0.016) TCGA-G4-6299-01 12 51868215 51868215 C A SLC4A8 Missense_Mutation p.A665D 0.18 tolerated(0.11) benign(0.007) TCGA-G4-6299-01 12 54369219 54369219 G C HOXC11 3'UTR 0.30 TCGA-G4-6299-01 12 56117724 56117724 C A RDH5 Missense_Mutation p.F208L 0.45 deleterious(0) probably_damaging(0.945) TCGA-G4-6299-01 12 57345997 57345997 C T RDH16 Missense_Mutation p.C257Y 0.25 tolerated(0.13) benign(0.006) TCGA-G4-6299-01 12 58140020 58140020 C G TSPAN31 Missense_Mutation p.A98G 0.29 deleterious(0.02) probably_damaging(0.931) TCGA-G4-6299-01 12 73056937 73056937 G A TRHDE Missense_Mutation p.E1013K 0.56 tolerated(0.46) benign(0.135) TCGA-G4-6299-01 12 90018037 90018037 C T ATP2B1 Missense_Mutation p.G423R 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6299-01 12 91366678 91366678 C T EPYC Silent p.P140P 0.44 TCGA-G4-6299-01 13 36878539 36878539 G - SPG20 Frame_Shift_Del p.T655Rfs*4 0.49 TCGA-G4-6299-01 14 20388790 20388790 G C OR4K5 Missense_Mutation p.V9L 0.21 deleterious(0) probably_damaging(0.997) TCGA-G4-6299-01 14 24036471 24036471 G T AP1G2 Missense_Mutation p.A18D 0.43 deleterious(0) probably_damaging(0.976) TCGA-G4-6299-01 14 24530768 24530768 C T LRRC16B Silent p.A789A 0.38 TCGA-G4-6299-01 14 31602566 31602566 C T HECTD1 Missense_Mutation p.R1267H 0.30 deleterious(0) probably_damaging(0.971) TCGA-G4-6299-01 14 36003588 36003588 G A INSM2 Missense_Mutation p.A44T 0.43 tolerated(0.08) benign(0.078) TCGA-G4-6299-01 14 73989015 73989015 T C HEATR4 Missense_Mutation p.E281G 0.26 deleterious(0.02) benign(0.085) TCGA-G4-6299-01 14 79181123 79181123 G A NRXN3 Missense_Mutation p.R189H 0.29 tolerated(0.16) probably_damaging(0.954) TCGA-G4-6299-01 14 96797960 96797960 A G ATG2B Missense_Mutation p.S495P 0.11 tolerated(0.15) probably_damaging(0.958) TCGA-G4-6299-01 15 27160016 27160018 TCT A GABRA5 Frame_Shift_Del p.L189Efs*9 0.09 TCGA-G4-6299-01 15 34105703 34105703 G T RYR3 Missense_Mutation p.W3475C 0.57 possibly_damaging(0.88) TCGA-G4-6299-01 15 42436244 42436244 C G PLA2G4F Missense_Mutation p.A692P 0.35 deleterious(0.04) benign(0.106) TCGA-G4-6299-01 15 74836775 74836775 T - ARID3B Frame_Shift_Del p.S167Lfs*90 0.10 TCGA-G4-6299-01 15 83926435 83926435 G C BNC1 Missense_Mutation p.A915G 0.53 tolerated(0.51) benign(0.427) TCGA-G4-6299-01 15 84639275 84639275 C G ADAMTSL3 Missense_Mutation p.Q844E 0.48 tolerated(0.29) possibly_damaging(0.464) TCGA-G4-6299-01 16 10867233 10867233 G A TVP23A Silent p.I130I 0.69 TCGA-G4-6299-01 16 30615680 30615680 A T ZNF689 Missense_Mutation p.W470R 0.32 tolerated(0.38) benign(0.001) TCGA-G4-6299-01 16 320996 320996 T C RGS11 Silent p.G322G 0.10 TCGA-G4-6299-01 16 3900697 3900697 C G CREBBP Silent p.L133L 0.55 TCGA-G4-6299-01 16 4943351 4943351 G A PPL Missense_Mutation p.R505W 0.80 deleterious(0) probably_damaging(1) TCGA-G4-6299-01 16 70841534 70841534 C A HYDIN Silent p.G5105G 0.68 TCGA-G4-6299-01 16 86544296 86544296 G A FOXF1 Missense_Mutation p.A41T 0.70 tolerated(0.11) benign(0.087) TCGA-G4-6299-01 17 18077213 18077213 C G MYO15A Missense_Mutation p.T3490S 0.64 unknown(0) TCGA-G4-6299-01 17 19459363 19459363 C A SLC47A1 Silent p.I303I 0.28 TCGA-G4-6299-01 17 21320006 21320006 C T KCNJ12 3'UTR 0.09 TCGA-G4-6299-01 17 33921057 33921057 A C AP2B1 Missense_Mutation p.D3A 0.22 deleterious(0) possibly_damaging(0.693) TCGA-G4-6299-01 17 38634899 38634899 C A TNS4 Missense_Mutation p.V638L 0.46 tolerated(0.1) benign(0.058) TCGA-G4-6299-01 17 56437579 56437579 G - RNF43 Frame_Shift_Del p.H295Ifs*124 0.46 TCGA-G4-6299-01 17 62226257 62226257 G A TEX2 3'UTR 0.63 TCGA-G4-6299-01 17 72999378 72999378 C T CDR2L Missense_Mutation p.R203C 0.68 deleterious(0) probably_damaging(0.999) TCGA-G4-6299-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.61 TCGA-G4-6299-01 17 76120133 76120133 G A TMC6 Missense_Mutation p.P340L 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6299-01 18 5478316 5478316 T A EPB41L3 Missense_Mutation p.K102M 0.24 deleterious(0) probably_damaging(0.95) TCGA-G4-6299-01 19 12088965 12088965 G T ZNF763 Nonsense_Mutation p.E79* 0.17 TCGA-G4-6299-01 19 16631741 16631741 C G C19orf44 3'UTR 0.21 TCGA-G4-6299-01 19 18197594 18197594 G T IL12RB1 Missense_Mutation p.L14I 0.14 tolerated(0.41) benign(0.008) TCGA-G4-6299-01 19 1986405 1986405 G A BTBD2 3'UTR 0.50 TCGA-G4-6299-01 19 20117182 20117182 C T ZNF682 Missense_Mutation p.V377I 0.21 deleterious(0.03) possibly_damaging(0.454) TCGA-G4-6299-01 19 22362965 22362965 C T ZNF676 Silent p.S518S 0.45 TCGA-G4-6299-01 19 22575688 22575688 G C ZNF98 Missense_Mutation p.R117G 0.32 deleterious(0.02) benign(0) TCGA-G4-6299-01 19 24270122 24270122 C A ZNF254 Missense_Mutation p.P5T 0.52 deleterious(0.02) benign(0.052) TCGA-G4-6299-01 19 2808364 2808364 G A THOP1 Silent p.A459A 0.16 TCGA-G4-6299-01 19 36222961 36222961 C T KMT2B Nonsense_Mutation p.R1864* 0.45 TCGA-G4-6299-01 19 37879652 37879652 G A ZNF527 Missense_Mutation p.S234N 0.12 tolerated(0.09) benign(0.001) TCGA-G4-6299-01 19 39075652 39075652 G A RYR1 Missense_Mutation p.A4906T 0.19 unknown(0) TCGA-G4-6299-01 19 42931264 42931264 C T LIPE Nonsense_Mutation p.W13* 0.31 TCGA-G4-6299-01 19 4428855 4428855 C T CHAF1A Silent p.H524H 0.23 TCGA-G4-6299-01 19 46032302 46032302 C T OPA3 3'UTR 0.39 TCGA-G4-6299-01 19 48657174 48657174 T C LIG1 Missense_Mutation p.S141G 0.19 tolerated(0.57) benign(0.001) TCGA-G4-6299-01 19 51015706 51015706 C T ASPDH Silent p.P188P 0.36 TCGA-G4-6299-01 19 51961193 51961193 A G SIGLEC8 Missense_Mutation p.V150A 0.20 deleterious(0) probably_damaging(0.995) TCGA-G4-6299-01 19 53014412 53014412 A C ZNF578 Missense_Mutation p.K260Q 0.26 tolerated(0.07) probably_damaging(0.96) TCGA-G4-6299-01 19 58353374 58353374 G C ZNF587B Intron 0.23 TCGA-G4-6299-01 19 9090232 9090232 A C MUC16 Missense_Mutation p.F528C 0.09 unknown(0) TCGA-G4-6299-01 19 9225668 9225668 C A OR7G1 Missense_Mutation p.V258L 0.23 deleterious(0.01) benign(0.133) TCGA-G4-6299-01 1 109394403 109394403 T A AKNAD1 Missense_Mutation p.K295I 0.33 deleterious(0.02) probably_damaging(0.959) TCGA-G4-6299-01 1 110085754 110085754 G A GPR61 Missense_Mutation p.R37Q 0.27 tolerated(0.57) benign(0.001) TCGA-G4-6299-01 1 111146661 111146661 G A KCNA2 Silent p.A248A 0.33 TCGA-G4-6299-01 1 1288996 1288998 CTC - MXRA8 In_Frame_Del p.E439del 0.41 TCGA-G4-6299-01 1 14108458 14108459 GG - PRDM2 Frame_Shift_Del p.G1390Efs*14 0.22 TCGA-G4-6299-01 1 144598638 144598638 C T RP11-640M9.2 RNA 0.09 TCGA-G4-6299-01 1 144994644 144994644 C A PDE4DIP Nonsense_Mutation p.E30* 0.08 TCGA-G4-6299-01 1 149915794 149915794 G A OTUD7B Missense_Mutation p.R832W 0.44 deleterious_low_confidence(0) possibly_damaging(0.609) TCGA-G4-6299-01 1 152279446 152279446 G T FLG Missense_Mutation p.A2639D 0.11 benign(0.066) TCGA-G4-6299-01 1 153234355 153234355 G A LOR Silent p.P310P 0.21 TCGA-G4-6299-01 1 155005607 155005607 G A DCST2 Silent p.T134T 0.28 TCGA-G4-6299-01 1 158532751 158532751 A T OR6P1 Missense_Mutation p.V215D 0.14 deleterious(0) possibly_damaging(0.745) TCGA-G4-6299-01 1 158589094 158589094 C A SPTA1 Missense_Mutation p.A2150S 0.11 tolerated(0.45) benign(0.007) TCGA-G4-6299-01 1 158988141 158988141 G T IFI16 Missense_Mutation p.E224D 0.21 tolerated(0.68) benign(0.041) TCGA-G4-6299-01 1 161166335 161166335 C G ADAMTS4 Intron 0.56 TCGA-G4-6299-01 1 16890446 16890446 G C NBPF1 Missense_Mutation p.P1138A 0.09 deleterious_low_confidence(0) benign(0.27) TCGA-G4-6299-01 1 175299288 175299288 C T TNR Missense_Mutation p.A1239T 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6299-01 1 209956616 209956616 G A C1orf74 Missense_Mutation p.R122C 0.25 deleterious(0.01) benign(0.01) TCGA-G4-6299-01 1 220789323 220789324 - A MARK1 Frame_Shift_Ins p.H180Qfs*3 0.19 TCGA-G4-6299-01 1 22170704 22170704 G A HSPG2 Silent p.P2851P 0.32 TCGA-G4-6299-01 1 227335096 227335096 C T CDC42BPA Silent p.S286S 0.14 TCGA-G4-6299-01 1 228246726 228246726 G A WNT3A Missense_Mutation p.G207R 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6299-01 1 228475452 228475452 C T OBSCN Missense_Mutation p.A3630V 0.21 probably_damaging(0.987) TCGA-G4-6299-01 1 228525043 228525043 G A OBSCN Missense_Mutation p.E6544K 0.49 probably_damaging(0.982) TCGA-G4-6299-01 1 237947200 237947200 C T RYR2 Missense_Mutation p.T4063M 0.29 possibly_damaging(0.787) TCGA-G4-6299-01 1 238090620 238090620 C T RP11-193H5.1 RNA 0.16 TCGA-G4-6299-01 1 33402491 33402491 C T RNF19B Silent p.P705P 0.37 TCGA-G4-6299-01 1 38061469 38061469 G A GNL2 5'UTR 0.29 TCGA-G4-6299-01 1 43914116 43914116 A T SZT2 Silent p.A3253A 0.32 TCGA-G4-6299-01 1 51754584 51754584 G C TTC39A Missense_Mutation p.L517V 0.16 deleterious(0.04) possibly_damaging(0.894) TCGA-G4-6299-01 1 87329124 87329124 T C SEP15 3'UTR 0.08 TCGA-G4-6299-01 1 91405328 91405328 T C ZNF644 Missense_Mutation p.E528G 0.10 deleterious(0) probably_damaging(0.998) TCGA-G4-6299-01 1 94480233 94480233 G T ABCA4 Missense_Mutation p.P1776T 0.22 deleterious(0.02) probably_damaging(1) TCGA-G4-6299-01 20 21142673 21142673 T C RP4-777D9.2 Intron 0.13 TCGA-G4-6299-01 20 34832830 34832830 C G AAR2 Missense_Mutation p.F323L 0.47 deleterious(0) probably_damaging(1) TCGA-G4-6299-01 20 44277353 44277353 C T WFDC11 3'UTR 0.17 TCGA-G4-6299-01 20 60702956 60702956 G A LSM14B Intron 0.72 TCGA-G4-6299-01 20 62664372 62664372 C T PRPF6 3'UTR 0.78 TCGA-G4-6299-01 21 31588163 31588163 C T CLDN8 Missense_Mutation p.M27I 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6299-01 21 45452036 45452036 A G TRAPPC10 Silent p.E44E 0.45 TCGA-G4-6299-01 21 45837810 45837810 C G TRPM2 Missense_Mutation p.N1049K 0.26 deleterious(0.02) possibly_damaging(0.721) TCGA-G4-6299-01 22 22843228 22843228 T G ZNF280B Missense_Mutation p.N166H 0.52 deleterious(0.02) possibly_damaging(0.897) TCGA-G4-6299-01 22 39083994 39083994 T - JOSD1 Frame_Shift_Del p.K174Nfs*19 0.13 TCGA-G4-6299-01 2 112732868 112732868 C T MERTK Silent p.V321V 0.32 TCGA-G4-6299-01 2 113940417 113940417 C T PSD4 Silent p.N128N 0.24 TCGA-G4-6299-01 2 152477450 152477450 G T NEB Silent p.R3515R 0.52 TCGA-G4-6299-01 2 172965280 172965280 C T DLX2 Silent p.T326T 0.73 TCGA-G4-6299-01 2 176982108 176982108 C T HOXD10 Missense_Mutation p.R183C 0.56 deleterious(0.01) possibly_damaging(0.739) TCGA-G4-6299-01 2 179441144 179441144 C A TTN Splice_Site p.X23239_splice 0.29 TCGA-G4-6299-01 2 85890587 85890587 C T SFTPB Missense_Mutation p.R307Q 0.24 tolerated(1) benign(0) TCGA-G4-6299-01 3 101062555 101062555 T C SENP7 Missense_Mutation p.E694G 0.16 deleterious(0.03) possibly_damaging(0.589) TCGA-G4-6299-01 3 10132030 10132031 - A FANCD2 Frame_Shift_Ins p.I1249Nfs*2 0.37 TCGA-G4-6299-01 3 122420364 122420364 C T PARP14 Missense_Mutation p.P988L 0.50 tolerated(0.33) benign(0) TCGA-G4-6299-01 3 123066663 123066663 G T ADCY5 Missense_Mutation p.H458N 0.63 deleterious(0.02) probably_damaging(0.965) TCGA-G4-6299-01 3 129156095 129156095 T C MBD4 Missense_Mutation p.N131S 0.61 tolerated(0.21) benign(0.078) TCGA-G4-6299-01 3 13378359 13378359 G A NUP210 Silent p.A1204A 0.63 TCGA-G4-6299-01 3 138739339 138739339 G T PRR23B Missense_Mutation p.D55E 0.86 tolerated(0.38) possibly_damaging(0.828) TCGA-G4-6299-01 3 140785121 140785121 G A SPSB4 Missense_Mutation p.E59K 0.79 tolerated(0.4) benign(0.008) TCGA-G4-6299-01 3 21792436 21792436 G C ZNF385D 5'UTR 0.30 TCGA-G4-6299-01 3 44635983 44635983 C A ZNF660 Missense_Mutation p.H100N 0.57 deleterious(0) probably_damaging(0.977) TCGA-G4-6299-01 3 46307578 46307578 A G CCR3 Missense_Mutation p.K331R 0.11 tolerated(0.29) benign(0.263) TCGA-G4-6299-01 3 46727925 46727925 T G ALS2CL Missense_Mutation p.H180P 0.20 tolerated(0.17) benign(0.304) TCGA-G4-6299-01 4 126373070 126373070 A G FAT4 Silent p.L3633L 0.11 TCGA-G4-6299-01 4 158060052 158060052 A T GLRB Missense_Mutation p.K234N 0.33 tolerated(0.11) benign(0.131) TCGA-G4-6299-01 4 170926876 170926876 G A MFAP3L Silent p.A51A 0.48 TCGA-G4-6299-01 4 3444493 3444493 C T HGFAC Missense_Mutation p.A51V 0.35 tolerated_low_confidence(0.67) benign(0.002) TCGA-G4-6299-01 4 48994042 48994042 A T CWH43 Missense_Mutation p.Y149F 0.21 tolerated(0.65) benign(0.305) TCGA-G4-6299-01 5 125968275 125968275 C T C5orf48 Nonsense_Mutation p.Q42* 0.54 TCGA-G4-6299-01 5 140558700 140558700 C A PCDHB8 Missense_Mutation p.P362H 0.18 deleterious_low_confidence(0) possibly_damaging(0.498) TCGA-G4-6299-01 5 14369498 14369498 G - TRIO Frame_Shift_Del p.E1028Rfs*29 0.45 TCGA-G4-6299-01 5 145493791 145493791 C T LARS Missense_Mutation p.E1137K 0.55 tolerated(0.34) benign(0.004) TCGA-G4-6299-01 5 178700002 178700002 C T ADAMTS2 Missense_Mutation p.A200T 0.58 tolerated(0.17) benign(0.155) TCGA-G4-6299-01 5 179707590 179707590 G T MAPK9 5'UTR 0.57 TCGA-G4-6299-01 5 35068967 35068967 A T PRLR Missense_Mutation p.N233K 0.28 tolerated(1) benign(0) TCGA-G4-6299-01 5 39126221 39126221 G A FYB Nonsense_Mutation p.Q652* 0.56 TCGA-G4-6299-01 5 60837761 60837761 G T ZSWIM6 Silent p.V918V 0.14 TCGA-G4-6299-01 5 82816992 82816992 G C VCAN Missense_Mutation p.S956T 0.25 deleterious(0.04) benign(0.05) TCGA-G4-6299-01 5 93798258 93798260 TTG - KIAA0825 In_Frame_Del p.T693del 0.50 TCGA-G4-6299-01 5 94782397 94782397 A C FAM81B Missense_Mutation p.K342T 0.51 deleterious(0.03) possibly_damaging(0.853) TCGA-G4-6299-01 6 138607162 138607162 C A KIAA1244 Missense_Mutation p.S847R 0.30 tolerated(0.4) benign(0.025) TCGA-G4-6299-01 6 166571880 166571880 C T T Missense_Mutation p.V411M 0.64 tolerated(0.1) benign(0.146) TCGA-G4-6299-01 6 167755126 167755128 ATC - TTLL2 In_Frame_Del p.I580del 0.43 TCGA-G4-6299-01 6 27278247 27278247 G A POM121L2 Missense_Mutation p.T568I 0.20 deleterious(0.02) possibly_damaging(0.453) TCGA-G4-6299-01 6 33411575 33411575 G C SYNGAP1 Missense_Mutation p.Q1082H 0.50 tolerated(0.24) benign(0.006) TCGA-G4-6299-01 6 39073207 39073207 C T SAYSD1 3'UTR 0.48 TCGA-G4-6299-01 6 43006355 43006355 T C CUL7 Missense_Mutation p.T1590A 0.09 tolerated(0.09) benign(0.024) TCGA-G4-6299-01 6 49604442 49604442 C T RHAG Silent p.T28T 0.21 TCGA-G4-6299-01 6 50740384 50740384 C T TFAP2D Missense_Mutation p.P389L 0.16 deleterious(0.02) possibly_damaging(0.905) TCGA-G4-6299-01 6 90392925 90392925 T A MDN1 Missense_Mutation p.S4010C 0.22 possibly_damaging(0.701) TCGA-G4-6299-01 6 97562038 97562038 G A KLHL32 Missense_Mutation p.R336K 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6299-01 7 137374721 137374721 C A DGKI Missense_Mutation p.Q143H 0.19 tolerated(0.16) benign(0.01) TCGA-G4-6299-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-G4-6299-01 7 142458405 142458405 G T PRSS1 Splice_Site p.X14_splice 0.21 TCGA-G4-6299-01 7 148964000 148964000 G A ZNF783 Missense_Mutation p.V171M 0.26 deleterious(0) probably_damaging(0.936) TCGA-G4-6299-01 7 21657360 21657360 G T DNAH11 Missense_Mutation p.D1412Y 0.40 possibly_damaging(0.776) TCGA-G4-6299-01 7 38502675 38502675 G A AMPH Missense_Mutation p.P263L 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6299-01 7 63726332 63726332 C A ZNF679 Silent p.L107L 0.11 TCGA-G4-6299-01 7 64168141 64168141 A G ZNF107 Missense_Mutation p.K487E 0.40 tolerated(0.05) possibly_damaging(0.846) TCGA-G4-6299-01 7 87145866 87145866 T A ABCB1 Missense_Mutation p.T1015S 0.27 tolerated(0.56) benign(0) TCGA-G4-6299-01 8 104831624 104831624 G C RIMS2 Intron 0.47 TCGA-G4-6299-01 8 10756316 10756316 T C XKR6 Missense_Mutation p.I358V 0.10 tolerated(1) benign(0.002) TCGA-G4-6299-01 8 132051951 132051951 G A ADCY8 Missense_Mutation p.P210L 0.57 tolerated(0.76) probably_damaging(0.995) TCGA-G4-6299-01 8 141874411 141874411 C A PTK2 Missense_Mutation p.Q150H 0.16 deleterious(0) probably_damaging(0.999) TCGA-G4-6299-01 8 145113211 145113211 C T OPLAH Missense_Mutation p.V294M 0.59 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6299-01 8 145113263 145113263 G A OPLAH Silent p.P276P 0.59 TCGA-G4-6299-01 8 145617878 145617878 G A ADCK5 Missense_Mutation p.A496T 0.27 tolerated(1) benign(0.005) TCGA-G4-6299-01 8 27954799 27954799 A G ELP3 Missense_Mutation p.E28G 0.08 tolerated(0.09) benign(0.001) TCGA-G4-6299-01 8 30557628 30557628 T C GSR Missense_Mutation p.D222G 0.13 deleterious(0) probably_damaging(0.969) TCGA-G4-6299-01 8 59739456 59739456 A G TOX Silent p.Y310Y 0.33 TCGA-G4-6299-01 8 66753641 66753641 G C PDE7A Missense_Mutation p.L35V 0.12 tolerated(0.06) probably_damaging(0.978) TCGA-G4-6299-01 8 92330496 92330496 C T SLC26A7 Missense_Mutation p.P177L 0.17 deleterious(0) probably_damaging(0.999) TCGA-G4-6299-01 9 123776184 123776184 T A C5 Missense_Mutation p.I742F 0.31 tolerated(0.09) benign(0) TCGA-G4-6299-01 9 139091664 139091664 C T LHX3 Missense_Mutation p.R110H 0.19 deleterious(0) probably_damaging(0.933) TCGA-G4-6299-01 9 140082936 140082936 C T ANAPC2 Missense_Mutation p.G17R 0.40 tolerated_low_confidence(0.17) benign(0.046) TCGA-G4-6299-01 9 34659753 34659753 C T IL11RA Intron 0.61 TCGA-G4-6299-01 9 35957427 35957427 G A OR2S2 Silent p.I223I 0.11 TCGA-G4-6299-01 9 40773411 40773411 T C ZNF658 Missense_Mutation p.R622G 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6299-01 X 107084259 107084259 C T MID2 Missense_Mutation p.R122W 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G4-6299-01 X 152090757 152090757 C T ZNF185 Nonsense_Mutation p.Q232* 0.30 TCGA-G4-6299-01 X 154490021 154490021 G A RAB39B 3'UTR 0.54 TCGA-G4-6299-01 X 70464140 70464153 CCAAGTACTTACGG - ZMYM3 Splice_Site p.X1093_splice 0.58 TCGA-G4-6299-01 X 83128508 83128508 G C CYLC1 Missense_Mutation p.W264C 0.58 tolerated(0.08) benign(0.001) TCGA-G4-6302-01 10 105371355 105371355 G A SH3PXD2A Missense_Mutation p.R403C 0.11 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 10 11505645 11505646 CT - USP6NL Frame_Shift_Del p.R444Sfs*17 0.09 TCGA-G4-6302-01 10 115987936 115987936 A G TDRD1 Intron 0.08 TCGA-G4-6302-01 10 116014783 116014783 C T VWA2 Silent p.D79D 0.06 TCGA-G4-6302-01 10 118031530 118031530 C T GFRA1 Silent p.A4A 0.07 TCGA-G4-6302-01 10 120897214 120897214 G A SFXN4 3'Flank 0.07 TCGA-G4-6302-01 10 12292401 12292401 G A CDC123 3'UTR 0.10 TCGA-G4-6302-01 10 123724860 123724860 G A NSMCE4A Nonsense_Mutation p.R232* 0.09 TCGA-G4-6302-01 10 124754077 124754077 T C IKZF5 Missense_Mutation p.K160R 0.08 tolerated(1) probably_damaging(0.956) TCGA-G4-6302-01 10 125798083 125798083 C T CHST15 Missense_Mutation p.A380T 0.09 tolerated(0.13) possibly_damaging(0.679) TCGA-G4-6302-01 10 1284250 1284250 G A ADARB2 Silent p.V435V 0.15 TCGA-G4-6302-01 10 129207381 129207381 C T DOCK1 Silent p.N1380N 0.11 TCGA-G4-6302-01 10 15824162 15824162 T C FAM188A Missense_Mutation p.N394D 0.11 tolerated(0.26) benign(0.26) TCGA-G4-6302-01 10 27552145 27552145 T C ARMC4P1 Splice_Site 0.18 TCGA-G4-6302-01 10 30316988 30316988 C G KIAA1462 Missense_Mutation p.E697Q 0.11 tolerated(0.13) possibly_damaging(0.833) TCGA-G4-6302-01 10 35928258 35928258 C - FZD8 3'UTR 0.09 TCGA-G4-6302-01 10 38407520 38407520 G C ZNF37A Missense_Mutation p.A481P 0.11 tolerated(0.28) probably_damaging(0.999) TCGA-G4-6302-01 10 48372241 48372241 C T ZNF488 3'UTR 0.07 TCGA-G4-6302-01 10 48389580 48389580 G A RBP3 Missense_Mutation p.S433L 0.09 deleterious(0.04) probably_damaging(0.971) TCGA-G4-6302-01 10 48390466 48390466 C T RBP3 Missense_Mutation p.V138I 0.14 tolerated(1) benign(0.03) TCGA-G4-6302-01 10 52573682 52573682 C T A1CF Missense_Mutation p.G428R 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 10 52610522 52610522 C T A1CF Missense_Mutation p.C9Y 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6302-01 10 56138664 56138664 C A PCDH15 Missense_Mutation p.A66S 0.08 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-G4-6302-01 10 5953003 5953003 G A FBXO18 Missense_Mutation p.V426M 0.09 tolerated(0.23) benign(0.3) TCGA-G4-6302-01 10 60588643 60588643 C T BICC1 Missense_Mutation p.R973C 0.12 tolerated(0.09) probably_damaging(0.997) TCGA-G4-6302-01 10 61029843 61029843 G A FAM13C Nonsense_Mutation p.Q207* 0.10 TCGA-G4-6302-01 10 61414180 61414180 T - SLC16A9 Frame_Shift_Del p.I202* 0.13 TCGA-G4-6302-01 10 72434365 72434365 A G ADAMTS14 Missense_Mutation p.T46A 0.12 tolerated(0.13) possibly_damaging(0.447) TCGA-G4-6302-01 10 72468518 72468518 T C ADAMTS14 Missense_Mutation p.L285P 0.11 deleterious(0) probably_damaging(0.996) TCGA-G4-6302-01 10 73045165 73045165 G A UNC5B Silent p.P177P 0.10 TCGA-G4-6302-01 10 73406335 73406335 C T CDH23 Silent p.Y62Y 0.07 TCGA-G4-6302-01 10 75675065 75675065 C T PLAU Missense_Mutation p.R343W 0.07 deleterious(0.01) possibly_damaging(0.761) TCGA-G4-6302-01 10 7608059 7608059 G A ITIH5 Nonsense_Mutation p.R821* 0.09 TCGA-G4-6302-01 10 78713594 78713594 A G KCNMA1 Missense_Mutation p.W759R 0.10 deleterious(0) probably_damaging(0.978) TCGA-G4-6302-01 10 871148 871151 ATTA - LARP4B Frame_Shift_Del p.I446Mfs*45 0.12 TCGA-G4-6302-01 10 875402 875402 G - LARP4B Frame_Shift_Del p.Q350Sfs*9 0.11 TCGA-G4-6302-01 10 89622620 89622620 T C KLLN 5'UTR 0.09 TCGA-G4-6302-01 10 90966236 90966236 G A CH25H Missense_Mutation p.R272W 0.08 deleterious(0) benign(0.041) TCGA-G4-6302-01 10 92672666 92672666 A T ANKRD1 Missense_Mutation p.L306H 0.10 tolerated(0.1) probably_damaging(0.943) TCGA-G4-6302-01 10 95159150 95159150 T - MYOF Frame_Shift_Del p.K407Rfs*6 0.08 TCGA-G4-6302-01 10 96106304 96106304 T - NOC3L Frame_Shift_Del p.T423Hfs*5 0.09 TCGA-G4-6302-01 10 97772400 97772400 C T CC2D2B Nonsense_Mutation p.Q78* 0.07 TCGA-G4-6302-01 10 97922324 97922324 T - ZNF518A RNA 0.10 TCGA-G4-6302-01 10 98742785 98742785 A - C10orf12 Frame_Shift_Del p.E549Kfs*54 0.10 TCGA-G4-6302-01 10 98824578 98824578 G A SLIT1 Missense_Mutation p.R181W 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 10 99969326 99969326 T - R3HCC1L Frame_Shift_Del p.L487Wfs*8 0.09 TCGA-G4-6302-01 11 102647495 102647498 AATA - MMP10 Frame_Shift_Del p.L211Sfs*23 0.13 TCGA-G4-6302-01 11 103106519 103106519 G A DYNC2H1 Nonsense_Mutation p.W3229* 0.11 TCGA-G4-6302-01 11 105842662 105842662 T C GRIA4 Silent p.V772V 0.14 TCGA-G4-6302-01 11 107463175 107463175 C T AP000889.3 Missense_Mutation p.P125S 0.13 tolerated_low_confidence(0.44) benign(0.047) TCGA-G4-6302-01 11 108043273 108043274 CT - NPAT Frame_Shift_Del p.L814Ffs*6 0.08 TCGA-G4-6302-01 11 108196880 108196880 A - ATM Frame_Shift_Del p.K2303Rfs*7 0.09 TCGA-G4-6302-01 11 110451079 110451079 T A ARHGAP20 Missense_Mutation p.Y864F 0.10 tolerated(0.49) benign(0.004) TCGA-G4-6302-01 11 111156451 111156451 C T C11orf53 Missense_Mutation p.T128I 0.10 tolerated(0.05) benign(0.033) TCGA-G4-6302-01 11 111835279 111835279 C T DIXDC1 Silent p.L23L 0.12 TCGA-G4-6302-01 11 111942466 111942467 - T PIH1D2 Frame_Shift_Ins p.I65Nfs*34 0.09 TCGA-G4-6302-01 11 117258048 117258048 G A CEP164 Missense_Mutation p.M618I 0.11 tolerated(0.9) benign(0.002) TCGA-G4-6302-01 11 117389378 117389378 G A DSCAML1 Missense_Mutation p.T498M 0.14 deleterious(0.03) probably_damaging(0.947) TCGA-G4-6302-01 11 119181151 119181151 C T MCAM Missense_Mutation p.E607K 0.08 tolerated(0.54) possibly_damaging(0.642) TCGA-G4-6302-01 11 120197971 120197971 A G TMEM136 5'UTR 0.11 TCGA-G4-6302-01 11 121460053 121460053 C T SORL1 Silent p.C1344C 0.12 TCGA-G4-6302-01 11 122945419 122945419 T C CLMP Missense_Mutation p.N271S 0.12 deleterious(0.03) benign(0.098) TCGA-G4-6302-01 11 123756073 123756073 G A TMEM225 Silent p.A20A 0.06 TCGA-G4-6302-01 11 123811133 123811133 C T OR4D5 Silent p.A270A 0.12 TCGA-G4-6302-01 11 124744125 124744125 T C ROBO3 Silent p.R648R 0.09 TCGA-G4-6302-01 11 125875822 125875822 A G CDON Silent p.S561S 0.06 TCGA-G4-6302-01 11 1266255 1266255 C - MUC5B Frame_Shift_Del p.P2717Qfs*3 0.08 TCGA-G4-6302-01 11 1268476 1268476 G A MUC5B Missense_Mutation p.G3456R 0.05 unknown(0) TCGA-G4-6302-01 11 1274075 1274075 G A MUC5B Missense_Mutation p.A5028T 0.11 unknown(0) TCGA-G4-6302-01 11 13729497 13729497 C T FAR1 Missense_Mutation p.A139V 0.09 tolerated(0.12) possibly_damaging(0.897) TCGA-G4-6302-01 11 14284464 14284464 C T RP11-21L19.1 RNA 0.11 TCGA-G4-6302-01 11 17615677 17615677 C - OTOG Frame_Shift_Del p.Q1138Rfs*24 0.09 TCGA-G4-6302-01 11 2356850 2356850 C T CD81-AS1 Intron 0.13 TCGA-G4-6302-01 11 27384579 27384584 GCGGCG - CCDC34 In_Frame_Del p.P53_P54del 0.10 TCGA-G4-6302-01 11 30034329 30034329 A C KCNA4 5'UTR 0.10 TCGA-G4-6302-01 11 32461019 32461019 A - WT1 5'Flank 0.10 TCGA-G4-6302-01 11 33047416 33047416 G A DEPDC7 Silent p.V95V 0.11 TCGA-G4-6302-01 11 36597030 36597030 T C RAG1 Missense_Mutation p.S726P 0.08 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-G4-6302-01 11 43964619 43964619 G A C11orf96 Silent p.T368T 0.20 TCGA-G4-6302-01 11 4615644 4615644 C T OR52I1 Missense_Mutation p.R126C 0.11 deleterious(0.01) benign(0.033) TCGA-G4-6302-01 11 46726477 46726477 C T ZNF408 Silent p.F409F 0.11 TCGA-G4-6302-01 11 47187847 47187847 A G ARFGAP2 Missense_Mutation p.L506P 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 11 47296117 47296117 C - MADD Frame_Shift_Del p.P23Rfs*30 0.12 TCGA-G4-6302-01 11 47367828 47367828 G A MYBPC3 Silent p.Y340Y 0.10 TCGA-G4-6302-01 11 48157626 48157626 G A PTPRJ Missense_Mutation p.V551I 0.08 tolerated(0.21) possibly_damaging(0.678) TCGA-G4-6302-01 11 48347231 48347231 C A OR4C3 Missense_Mutation p.L247M 0.04 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 11 5068286 5068286 C A OR52J3 Silent p.A177A 0.11 TCGA-G4-6302-01 11 51411717 51411717 G T OR4A5 Missense_Mutation p.Q227K 0.06 tolerated_low_confidence(0.06) benign(0.12) TCGA-G4-6302-01 11 5462194 5462194 G A OR51I1 Missense_Mutation p.P184L 0.09 deleterious(0.04) benign(0.143) TCGA-G4-6302-01 11 55761747 55761747 C T OR5F1 Missense_Mutation p.A119T 0.06 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 11 557833 557833 G A C11orf35 Intron 0.10 TCGA-G4-6302-01 11 56258268 56258268 G A OR5M8 Silent p.N193N 0.10 TCGA-G4-6302-01 11 57193026 57193026 C T SLC43A3 Missense_Mutation p.R101H 0.14 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 11 57367598 57367599 AT CAA SERPING1 Frame_Shift_Ins p.I100Qfs*33 0.11 TCGA-G4-6302-01 11 58170656 58170656 G A OR5B3 Missense_Mutation p.T76I 0.07 deleterious_low_confidence(0.04) benign(0.111) TCGA-G4-6302-01 11 61495745 61495745 G A DAGLA Missense_Mutation p.A253T 0.13 tolerated(0.14) benign(0.035) TCGA-G4-6302-01 11 61548239 61548239 G - MYRF Frame_Shift_Del p.S823Vfs*22 0.08 TCGA-G4-6302-01 11 621906 621906 T C CDHR5 Splice_Site p.X105_splice 0.10 TCGA-G4-6302-01 11 62297906 62297906 A G AHNAK Missense_Mutation p.V1328A 0.09 benign(0.03) TCGA-G4-6302-01 11 62301494 62301494 C T AHNAK Missense_Mutation p.R132Q 0.11 probably_damaging(0.996) TCGA-G4-6302-01 11 64055258 64055258 C T GPR137 Missense_Mutation p.A216V 0.07 deleterious(0.04) probably_damaging(0.994) TCGA-G4-6302-01 11 64402790 64402790 G A NRXN2 Missense_Mutation p.R1180W 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 11 64563852 64563852 C T MAP4K2 Silent p.T548T 0.11 TCGA-G4-6302-01 11 64597443 64597443 C T CDC42BPG Missense_Mutation p.R1156H 0.13 tolerated(0.38) probably_damaging(1) TCGA-G4-6302-01 11 64812909 64812909 C T NAALADL1 Missense_Mutation p.R686H 0.07 tolerated(0.07) benign(0.12) TCGA-G4-6302-01 11 64825900 64825901 - T NAALADL1 Frame_Shift_Ins p.A32Sfs*46 0.09 TCGA-G4-6302-01 11 6559673 6559673 G A DNHD1 Missense_Mutation p.R1020H 0.08 benign(0.024) TCGA-G4-6302-01 11 6588955 6588955 G A DNHD1 Silent p.T4072T 0.14 TCGA-G4-6302-01 11 66444247 66444247 C T RBM4B Missense_Mutation p.G102S 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 11 67267648 67267648 T C PITPNM1 Silent p.P295P 0.14 TCGA-G4-6302-01 11 67810426 67810426 A G TCIRG1 Missense_Mutation p.H144R 0.13 tolerated(0.46) benign(0.002) TCGA-G4-6302-01 11 67938719 67938719 C T SUV420H1 Splice_Site p.X274_splice 0.05 TCGA-G4-6302-01 11 68840442 68840442 C T TPCN2 Silent p.N401N 0.09 TCGA-G4-6302-01 11 70007816 70007816 T C ANO1 Silent p.F623F 0.05 TCGA-G4-6302-01 11 70333303 70333303 G A SHANK2 Missense_Mutation p.P1033L 0.10 deleterious(0) benign(0.046) TCGA-G4-6302-01 11 7110592 7110592 G A RBMXL2 Missense_Mutation p.V81M 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-G4-6302-01 11 71941483 71941483 C T INPPL1 Missense_Mutation p.R390C 0.07 deleterious(0) possibly_damaging(0.893) TCGA-G4-6302-01 11 73881967 73881967 A - C2CD3 5'UTR 0.12 TCGA-G4-6302-01 11 74800755 74800755 C T OR2AT4 Missense_Mutation p.D2N 0.11 tolerated_low_confidence(0.13) benign(0.001) TCGA-G4-6302-01 11 7686736 7686736 T C CYB5R2 Missense_Mutation p.K234E 0.08 tolerated(0.13) possibly_damaging(0.676) TCGA-G4-6302-01 11 77832193 77832193 T - ALG8 Frame_Shift_Del p.V133Wfs*24 0.09 TCGA-G4-6302-01 11 77931424 77931424 C T GAB2 Missense_Mutation p.G610S 0.10 tolerated(0.5) probably_damaging(0.998) TCGA-G4-6302-01 11 7846623 7846623 C A OR5P3 Silent p.G299G 0.08 TCGA-G4-6302-01 11 85694935 85694935 G A PICALM Missense_Mutation p.S497F 0.09 deleterious(0.01) benign(0.221) TCGA-G4-6302-01 11 89911107 89911108 - A NAALAD2 Frame_Shift_Ins p.Q563Tfs*14 0.12 TCGA-G4-6302-01 11 93417138 93417138 G T KIAA1731 Missense_Mutation p.G320W 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 11 93420899 93420899 A G KIAA1731 Missense_Mutation p.T402A 0.08 tolerated(0.17) benign(0.073) TCGA-G4-6302-01 11 94924639 94924639 G A SESN3 Missense_Mutation p.R91W 0.10 deleterious(0) benign(0.083) TCGA-G4-6302-01 11 95825580 95825580 G T MAML2 Silent p.R539R 0.13 TCGA-G4-6302-01 12 100904745 100904745 G A NR1H4 Missense_Mutation p.R100H 0.15 deleterious(0.02) possibly_damaging(0.556) TCGA-G4-6302-01 12 102576394 102576394 A - PARPBP Frame_Shift_Del p.I420Lfs*3 0.08 TCGA-G4-6302-01 12 104376936 104376936 C T TDG Missense_Mutation p.R213C 0.06 deleterious(0.01) possibly_damaging(0.865) TCGA-G4-6302-01 12 10462056 10462056 C T KLRD1 Missense_Mutation p.T26M 0.09 deleterious(0) possibly_damaging(0.877) TCGA-G4-6302-01 12 109017019 109017019 A G SELPLG Silent p.R371R 0.12 TCGA-G4-6302-01 12 110370961 110370961 C T GIT2 Missense_Mutation p.R701H 0.10 deleterious(0) benign(0.409) TCGA-G4-6302-01 12 110641719 110641719 A C IFT81 Silent p.A536A 0.09 TCGA-G4-6302-01 12 111345280 111345280 A C CCDC63 Nonstop_Mutation p.*564Cext*? 0.12 TCGA-G4-6302-01 12 11174363 11174363 T C TAS2R19 Missense_Mutation p.M270V 0.09 tolerated(0.31) benign(0.01) TCGA-G4-6302-01 12 113835021 113835021 A G SDS Missense_Mutation p.F201S 0.08 deleterious(0.03) possibly_damaging(0.794) TCGA-G4-6302-01 12 116972826 116972826 G A LINC00173 RNA 0.12 TCGA-G4-6302-01 12 117178862 117178862 C T RNFT2 Missense_Mutation p.R16C 0.06 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G4-6302-01 12 120621398 120621398 G A GCN1L1 Nonsense_Mutation p.R134* 0.10 TCGA-G4-6302-01 12 121880425 121880425 C T KDM2B Missense_Mutation p.R940Q 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.575) TCGA-G4-6302-01 12 122277730 122277730 G A HPD Silent p.G362G 0.06 TCGA-G4-6302-01 12 122748206 122748206 C T VPS33A Missense_Mutation p.R70H 0.06 tolerated(0.48) benign(0.035) TCGA-G4-6302-01 12 124497310 124497310 G T ZNF664 Missense_Mutation p.A207S 0.20 tolerated(0.19) benign(0.001) TCGA-G4-6302-01 12 125397471 125397471 T C UBC Missense_Mutation p.T283A 0.11 deleterious(0.02) probably_damaging(0.989) TCGA-G4-6302-01 12 12814064 12814064 T C GPR19 3'UTR 0.12 TCGA-G4-6302-01 12 132551377 132551377 A G EP400 Missense_Mutation p.Q2871R 0.16 probably_damaging(0.983) TCGA-G4-6302-01 12 132862900 132862900 A G GALNT9 Missense_Mutation p.Y119H 0.09 deleterious(0) probably_damaging(0.988) TCGA-G4-6302-01 12 133331561 133331561 C A ANKLE2 Nonsense_Mutation p.G114* 0.11 TCGA-G4-6302-01 12 15777240 15777240 C T EPS8 Missense_Mutation p.V716M 0.10 tolerated(0.24) benign(0.003) TCGA-G4-6302-01 12 16517129 16517129 G A MGST1 3'UTR 0.17 TCGA-G4-6302-01 12 18491399 18491399 T C PIK3C2G Missense_Mutation p.C438R 0.09 deleterious(0) probably_damaging(0.993) TCGA-G4-6302-01 12 20903749 20903749 G A SLCO1C1 Missense_Mutation p.A647T 0.09 tolerated(0.09) benign(0.001) TCGA-G4-6302-01 12 300335 300335 G A SLC6A12 Missense_Mutation p.P582S 0.07 tolerated(0.63) possibly_damaging(0.776) TCGA-G4-6302-01 12 31451042 31451042 G A FAM60A Missense_Mutation p.R33C 0.13 tolerated(0.06) possibly_damaging(0.534) TCGA-G4-6302-01 12 32949082 32949082 C T PKP2 Missense_Mutation p.G817E 0.05 deleterious(0.01) possibly_damaging(0.611) TCGA-G4-6302-01 12 33592483 33592483 T - SYT10 5'UTR 0.10 TCGA-G4-6302-01 12 43822133 43822133 G A ADAMTS20 Missense_Mutation p.P1286S 0.05 tolerated(0.08) benign(0.23) TCGA-G4-6302-01 12 49334951 49334951 C T ARF3 5'UTR 0.10 TCGA-G4-6302-01 12 49418699 49418699 G A KMT2D Missense_Mutation p.A5272V 0.10 unknown(0) TCGA-G4-6302-01 12 49444386 49444386 A C KMT2D Silent p.P995P 0.11 TCGA-G4-6302-01 12 52285018 52285018 C A ANKRD33 Missense_Mutation p.L430I 0.12 tolerated(0.11) benign(0.011) TCGA-G4-6302-01 12 52585429 52585431 CTC - KRT80 In_Frame_Del p.E86del 0.11 TCGA-G4-6302-01 12 52966336 52966336 C T KRT74 Missense_Mutation p.S196N 0.04 tolerated(0.37) benign(0.12) TCGA-G4-6302-01 12 53709559 53709559 C T AAAS Missense_Mutation p.V87M 0.14 tolerated(0.25) benign(0.004) TCGA-G4-6302-01 12 53877706 53877708 CCT - MAP3K12 In_Frame_Del p.R449del 0.10 TCGA-G4-6302-01 12 54790009 54790009 C A ITGA5 3'UTR 0.07 TCGA-G4-6302-01 12 55794602 55794602 C T OR6C65 Missense_Mutation p.A97V 0.09 tolerated_low_confidence(0.07) benign(0.011) TCGA-G4-6302-01 12 57598192 57598192 G A LRP1 Splice_Site p.X3651_splice 0.13 TCGA-G4-6302-01 12 57843560 57843560 G A INHBC Missense_Mutation p.A272T 0.14 tolerated(0.21) benign(0.329) TCGA-G4-6302-01 12 57870725 57870725 G A ARHGAP9 Missense_Mutation p.R298C 0.11 tolerated(0.1) benign(0.002) TCGA-G4-6302-01 12 58124613 58124613 C T AGAP2 Missense_Mutation p.V757I 0.08 tolerated(0.05) possibly_damaging(0.502) TCGA-G4-6302-01 12 62798057 62798057 G T USP15 Missense_Mutation p.G950C 0.07 deleterious(0.04) benign(0.319) TCGA-G4-6302-01 12 6806571 6806572 - G PIANP Frame_Shift_Ins p.H136Sfs*16 0.11 TCGA-G4-6302-01 12 6886608 6886608 C T LAG3 Silent p.C412C 0.09 TCGA-G4-6302-01 12 70150403 70150403 G A RAB3IP Missense_Mutation p.G173D 0.05 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 12 7060852 7060852 G A PTPN6 Missense_Mutation p.R30Q 0.12 deleterious(0) benign(0.43) TCGA-G4-6302-01 12 7087641 7087641 C T LPCAT3 Missense_Mutation p.G301D 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-G4-6302-01 12 71978055 71978055 C T LGR5 Silent p.D755D 0.10 TCGA-G4-6302-01 12 7361123 7361123 C A PEX5 Missense_Mutation p.L433M 0.12 tolerated(0.18) benign(0.249) TCGA-G4-6302-01 12 8808411 8808411 G A MFAP5 Missense_Mutation p.A37V 0.13 tolerated(0.64) benign(0.002) TCGA-G4-6302-01 12 9090628 9090628 G T PHC1 Missense_Mutation p.E944D 0.08 tolerated(0.26) unknown(0) TCGA-G4-6302-01 12 91502596 91502596 T C LUM Missense_Mutation p.D54G 0.13 deleterious(0.01) probably_damaging(0.952) TCGA-G4-6302-01 12 95604116 95604116 G A FGD6 Missense_Mutation p.P315L 0.06 deleterious_low_confidence(0.04) benign(0.32) TCGA-G4-6302-01 12 95663891 95663891 C T VEZT Missense_Mutation p.R259W 0.13 deleterious(0) probably_damaging(0.993) TCGA-G4-6302-01 12 96180976 96180976 G A NTN4 Missense_Mutation p.A109V 0.12 deleterious(0) possibly_damaging(0.71) TCGA-G4-6302-01 12 96292392 96292392 C T CCDC38 Missense_Mutation p.E163K 0.10 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 13 110437624 110437624 C T IRS2 Silent p.V259V 0.09 TCGA-G4-6302-01 13 113140463 113140463 A G TUBGCP3 Silent p.G856G 0.08 TCGA-G4-6302-01 13 113556611 113556611 C T MCF2L Missense_Mutation p.T32M 0.09 tolerated_low_confidence(0.07) benign(0.097) TCGA-G4-6302-01 13 113783855 113783855 G A F10 Missense_Mutation p.E54K 0.08 deleterious(0.03) possibly_damaging(0.723) TCGA-G4-6302-01 13 25480394 25480394 G T CENPJ Silent p.S594S 0.13 TCGA-G4-6302-01 13 25887026 25887026 C T NUPL1 Missense_Mutation p.P98S 0.11 deleterious(0.03) benign(0.079) TCGA-G4-6302-01 13 26133142 26133142 C T ATP8A2 Missense_Mutation p.T432M 0.10 deleterious(0) probably_damaging(0.994) TCGA-G4-6302-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.04 TCGA-G4-6302-01 13 30077256 30077256 G A MTUS2 Silent p.P1351P 0.08 TCGA-G4-6302-01 13 30854355 30854355 C T KATNAL1 Silent p.R56R 0.10 TCGA-G4-6302-01 13 38213237 38213237 G A TRPC4 Silent p.Y722Y 0.10 TCGA-G4-6302-01 13 40263951 40263951 G T COG6 Missense_Mutation p.R355M 0.07 deleterious(0) probably_damaging(0.985) TCGA-G4-6302-01 13 42874486 42874486 A - AKAP11 Frame_Shift_Del p.N537Ifs*8 0.09 TCGA-G4-6302-01 13 42875634 42875634 T - AKAP11 Frame_Shift_Del p.S919Pfs*33 0.12 TCGA-G4-6302-01 13 42877883 42877883 C T AKAP11 Silent p.S1667S 0.13 TCGA-G4-6302-01 13 47266750 47266750 C T LRCH1 Missense_Mutation p.S365L 0.13 tolerated(0.18) benign(0.038) TCGA-G4-6302-01 13 47409273 47409273 G T HTR2A Missense_Mutation p.S372Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 13 53049111 53049111 A G CKAP2 Silent p.R629R 0.14 TCGA-G4-6302-01 13 77581508 77581508 G T FBXL3 Silent p.R353R 0.11 TCGA-G4-6302-01 13 79191146 79191146 T G RNF219 Silent p.L250L 0.05 TCGA-G4-6302-01 13 84456334 84456334 G A SLITRK1 5'UTR 0.12 TCGA-G4-6302-01 13 88329675 88329675 G A SLITRK5 Missense_Mutation p.V678I 0.12 deleterious(0) possibly_damaging(0.691) TCGA-G4-6302-01 13 99452554 99452554 G A DOCK9 Silent p.S1982S 0.07 TCGA-G4-6302-01 14 100934421 100934421 C T WDR25 Missense_Mutation p.R296W 0.10 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 14 101347507 101347507 G - RTL1 Frame_Shift_Del p.Q1207Rfs*77 0.10 TCGA-G4-6302-01 14 104206432 104206432 G - PPP1R13B Frame_Shift_Del p.P774Lfs*97 0.09 TCGA-G4-6302-01 14 105196315 105196315 C - ADSSL1 Frame_Shift_Del p.P30Qfs*18 0.09 TCGA-G4-6302-01 14 105409172 105409172 G - AHNAK2 Frame_Shift_Del p.L4206Cfs*19 0.08 TCGA-G4-6302-01 14 105410774 105410774 C G AHNAK2 Missense_Mutation p.V3672L 0.11 possibly_damaging(0.893) TCGA-G4-6302-01 14 105413988 105413988 C T AHNAK2 Silent p.A2600A 0.13 TCGA-G4-6302-01 14 105692429 105692429 C - BRF1 Frame_Shift_Del p.G342Afs*36 0.10 TCGA-G4-6302-01 14 20528659 20528659 T - OR4L1 Frame_Shift_Del p.L154Yfs*4 0.09 TCGA-G4-6302-01 14 23341990 23341990 T C LRP10 Silent p.H26H 0.10 TCGA-G4-6302-01 14 23531709 23531709 C T ACIN1 Silent p.Q1027Q 0.07 TCGA-G4-6302-01 14 23549908 23549909 CT - ACIN1 Frame_Shift_Del p.E270Gfs*13 0.14 TCGA-G4-6302-01 14 23848246 23848246 C A CMTM5 Missense_Mutation p.L96M 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-G4-6302-01 14 23853789 23853789 T G MYH6 Silent p.G1809G 0.11 TCGA-G4-6302-01 14 24517971 24517971 G - LRRC16B 5'Flank 0.11 TCGA-G4-6302-01 14 24542795 24542795 C T CPNE6 Missense_Mutation p.P86S 0.06 deleterious(0.02) benign(0.063) TCGA-G4-6302-01 14 24587320 24587320 G A DCAF11 Missense_Mutation p.G178D 0.09 deleterious(0) probably_damaging(0.994) TCGA-G4-6302-01 14 24709172 24709172 G A TINF2 Intron 0.09 TCGA-G4-6302-01 14 24884051 24884051 G A NYNRIN Silent p.P1032P 0.14 TCGA-G4-6302-01 14 24885812 24885812 C T NYNRIN Silent p.I1619I 0.12 TCGA-G4-6302-01 14 29236589 29236589 C T FOXG1 Missense_Mutation p.A35V 0.10 deleterious_low_confidence(0.05) unknown(0) TCGA-G4-6302-01 14 31576777 31576777 C T HECTD1 Missense_Mutation p.R2205H 0.13 deleterious(0.03) possibly_damaging(0.781) TCGA-G4-6302-01 14 34269462 34269462 C T NPAS3 Missense_Mutation p.T650M 0.15 tolerated_low_confidence(0.09) benign(0.375) TCGA-G4-6302-01 14 35780049 35780049 C T PSMA6 Silent p.A119A 0.08 TCGA-G4-6302-01 14 36840726 36840726 G A DPPA3P2 RNA 0.09 TCGA-G4-6302-01 14 38725334 38725335 - A CLEC14A 5'UTR 0.10 TCGA-G4-6302-01 14 47426608 47426608 A G MDGA2 Silent p.A686A 0.08 TCGA-G4-6302-01 14 50088296 50088296 C A MGAT2 Missense_Mutation p.L104M 0.09 deleterious(0) possibly_damaging(0.629) TCGA-G4-6302-01 14 50218307 50218307 A G KLHDC1 Silent p.S346S 0.13 TCGA-G4-6302-01 14 50251218 50251219 - T NEMF 3'UTR 0.12 TCGA-G4-6302-01 14 55817461 55817461 A - FBXO34 Frame_Shift_Del p.I120Lfs*13 0.12 TCGA-G4-6302-01 14 59970706 59970706 A G JKAMP Silent p.V284V 0.09 TCGA-G4-6302-01 14 64457219 64457219 G T SYNE2 Nonsense_Mutation p.E802* 0.04 TCGA-G4-6302-01 14 64655325 64655326 - A SYNE2 Frame_Shift_Ins p.N5926Kfs*2 0.09 TCGA-G4-6302-01 14 67745936 67745936 G A MPP5 Missense_Mutation p.E17K 0.07 tolerated_low_confidence(0.6) benign(0.026) TCGA-G4-6302-01 14 68242597 68242597 G - ZFYVE26 Frame_Shift_Del p.P1734Lfs*10 0.08 TCGA-G4-6302-01 14 69256425 69256425 G A ZFP36L1 Missense_Mutation p.P281L 0.11 tolerated(0.17) benign(0.392) TCGA-G4-6302-01 14 71199426 71199426 C T MAP3K9 Missense_Mutation p.R901H 0.08 deleterious(0.04) possibly_damaging(0.817) TCGA-G4-6302-01 14 71443996 71443996 T C PCNX Silent p.S314S 0.15 TCGA-G4-6302-01 14 74186016 74186016 T - ELMSAN1 Frame_Shift_Del p.K1042Nfs*51 0.11 TCGA-G4-6302-01 14 77948837 77948837 C A ISM2 Missense_Mutation p.E267D 0.10 tolerated(0.2) possibly_damaging(0.636) TCGA-G4-6302-01 14 86089280 86089280 G T FLRT2 Missense_Mutation p.E474D 0.08 tolerated(1) benign(0.009) TCGA-G4-6302-01 14 95053878 95053878 C - SERPINA5 Frame_Shift_Del p.S62Afs*9 0.10 TCGA-G4-6302-01 14 95562578 95562578 G A DICER1 Missense_Mutation p.A1560V 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 14 95910814 95910814 C - SYNE3 Intron 0.09 TCGA-G4-6302-01 15 100695455 100695455 C T ADAMTS17 Missense_Mutation p.V418M 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-G4-6302-01 15 25936891 25936891 C T ATP10A Missense_Mutation p.V1046M 0.07 deleterious(0) possibly_damaging(0.629) TCGA-G4-6302-01 15 26026181 26026181 G A ATP10A Silent p.R213R 0.14 TCGA-G4-6302-01 15 29415373 29415373 G - FAM189A1 3'UTR 0.23 TCGA-G4-6302-01 15 34130001 34130002 - A RYR3 Frame_Shift_Ins p.E3943Rfs*18 0.12 TCGA-G4-6302-01 15 37388626 37388626 G - MEIS2 Frame_Shift_Del p.P84Rfs*6 0.16 TCGA-G4-6302-01 15 39880757 39880757 G A THBS1 Nonsense_Mutation p.W501* 0.08 TCGA-G4-6302-01 15 41245912 41245912 G T CHAC1 Missense_Mutation p.R86M 0.09 deleterious(0) possibly_damaging(0.907) TCGA-G4-6302-01 15 41522810 41522810 G A EXD1 5'UTR 0.11 TCGA-G4-6302-01 15 42113931 42113931 C T MAPKBP1 Silent p.N962N 0.12 TCGA-G4-6302-01 15 42149883 42149883 C - SPTBN5 Frame_Shift_Del p.G2751Afs*60 0.09 TCGA-G4-6302-01 15 42175304 42175304 C T SPTBN5 Silent p.Q594Q 0.07 TCGA-G4-6302-01 15 42743123 42743123 G A ZNF106 Silent p.F426F 0.05 TCGA-G4-6302-01 15 43738616 43738616 C T TP53BP1 Silent p.A1003A 0.09 TCGA-G4-6302-01 15 44069053 44069053 A C ELL3 Missense_Mutation p.F16C 0.11 deleterious(0.01) probably_damaging(0.984) TCGA-G4-6302-01 15 48434477 48434477 C T SLC24A5 Missense_Mutation p.L478F 0.09 tolerated(1) benign(0.001) TCGA-G4-6302-01 15 50769531 50769531 G A USP8 Silent p.T351T 0.05 TCGA-G4-6302-01 15 58913708 58913708 C A ADAM10 Missense_Mutation p.E491D 0.11 tolerated(0.43) benign(0.002) TCGA-G4-6302-01 15 59359144 59359144 C T RNF111 Silent p.H516H 0.09 TCGA-G4-6302-01 15 59799498 59799498 C T FAM81A Missense_Mutation p.A167V 0.09 tolerated(1) benign(0.327) TCGA-G4-6302-01 15 62257051 62257051 A - VPS13C Frame_Shift_Del p.S1021Hfs*3 0.09 TCGA-G4-6302-01 15 64449094 64449094 C T PPIB Missense_Mutation p.G120S 0.10 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 15 64915101 64915101 T A ZNF609 Missense_Mutation p.S275T 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6302-01 15 68445974 68445976 TTC - PIAS1 In_Frame_Del p.L294del 0.08 TCGA-G4-6302-01 15 68480286 68480286 T - PIAS1 3'UTR 0.10 TCGA-G4-6302-01 15 72103836 72103836 G A NR2E3 RNA 0.14 TCGA-G4-6302-01 15 72252421 72252421 T - MYO9A Frame_Shift_Del p.N668Ifs*10 0.10 TCGA-G4-6302-01 15 74487890 74487890 C T STRA6 Intron 0.10 TCGA-G4-6302-01 15 75113109 75113109 G A LMAN1L Splice_Site p.X303_splice 0.12 TCGA-G4-6302-01 15 75198620 75198620 T C FAM219B Missense_Mutation p.R101G 0.23 deleterious(0) possibly_damaging(0.814) TCGA-G4-6302-01 15 77472043 77472043 C A PEAK1 Silent p.V742V 0.07 TCGA-G4-6302-01 15 77474268 77474268 T - PEAK1 Frame_Shift_Del p.M1? 0.09 TCGA-G4-6302-01 15 78825662 78825662 A C HYKK Missense_Mutation p.S258R 0.13 deleterious(0.04) probably_damaging(0.972) TCGA-G4-6302-01 15 84659951 84659951 C T ADAMTSL3 Nonsense_Mutation p.R1320* 0.08 TCGA-G4-6302-01 15 86278855 86278855 A - AKAP13 Frame_Shift_Del p.K2508Rfs*50 0.08 TCGA-G4-6302-01 15 89401595 89401595 A G ACAN Missense_Mutation p.T1927A 0.08 tolerated(0.21) benign(0.153) TCGA-G4-6302-01 15 89744315 89744315 A - ABHD2 3'UTR 0.11 TCGA-G4-6302-01 15 90210390 90210390 C T PLIN1 Missense_Mutation p.R329Q 0.10 tolerated(1) benign(0.003) TCGA-G4-6302-01 15 92459304 92459304 G A SLCO3A1 Missense_Mutation p.G88R 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 15 93007486 93007486 C T ST8SIA2 Silent p.D333D 0.09 TCGA-G4-6302-01 15 93567632 93567632 C T CHD2 Silent p.S1728S 0.11 TCGA-G4-6302-01 16 11114148 11114148 G A CLEC16A Missense_Mutation p.A468T 0.08 tolerated(0.15) probably_damaging(0.987) TCGA-G4-6302-01 16 11980780 11980780 T C GSPT1 Silent p.S322S 0.09 TCGA-G4-6302-01 16 1413121 1413121 C T GNPTG 3'UTR 0.12 TCGA-G4-6302-01 16 15133875 15133875 C A NTAN1 Missense_Mutation p.R197L 0.14 deleterious(0) possibly_damaging(0.726) TCGA-G4-6302-01 16 1573884 1573884 C T IFT140 Missense_Mutation p.R1072Q 0.12 tolerated(0.28) benign(0.043) TCGA-G4-6302-01 16 15797910 15797910 C A MYH11 Missense_Mutation p.G1960C 0.06 possibly_damaging(0.711) TCGA-G4-6302-01 16 15820795 15820797 CTT - MYH11 In_Frame_Del p.K1263del 0.09 TCGA-G4-6302-01 16 16184263 16184263 C T ABCC1 Missense_Mutation p.T821M 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 16 16248796 16248796 G A ABCC6 Silent p.I1325I 0.07 TCGA-G4-6302-01 16 16425507 16425507 G A NPIPA7 5'Flank 0.11 TCGA-G4-6302-01 16 19132717 19132717 C T ITPRIPL2 3'UTR 0.10 TCGA-G4-6302-01 16 2012373 2012373 C T RPS2 Intron 0.11 TCGA-G4-6302-01 16 2018555 2018555 C A RNF151 Missense_Mutation p.P123T 0.09 tolerated(0.09) benign(0.156) TCGA-G4-6302-01 16 22128183 22128183 C - VWA3A Frame_Shift_Del p.P308Lfs*4 0.08 TCGA-G4-6302-01 16 22291688 22291688 C T EEF2K Nonsense_Mutation p.Q687* 0.10 TCGA-G4-6302-01 16 2229989 2229989 C T CASKIN1 Missense_Mutation p.R1127H 0.07 probably_damaging(0.985) TCGA-G4-6302-01 16 22558003 22558003 T - RP11-368J21.3 RNA 0.15 TCGA-G4-6302-01 16 227309 227309 C A HBA1 Missense_Mutation p.L110M 0.11 tolerated(0.12) benign(0.25) TCGA-G4-6302-01 16 2374439 2374439 G A ABCA3 Missense_Mutation p.P138L 0.16 tolerated(0.25) benign(0.001) TCGA-G4-6302-01 16 2522861 2522861 G A NTN3 Missense_Mutation p.R363H 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6302-01 16 25255172 25255172 T C ZKSCAN2 Missense_Mutation p.S639G 0.08 tolerated(0.21) possibly_damaging(0.785) TCGA-G4-6302-01 16 2550465 2550466 - G TBC1D24 Frame_Shift_Ins p.S503Qfs*55 0.08 TCGA-G4-6302-01 16 27499593 27499593 G A GTF3C1 Missense_Mutation p.R1219W 0.09 deleterious(0) probably_damaging(0.977) TCGA-G4-6302-01 16 27629821 27629821 C T KIAA0556 Missense_Mutation p.R47W 0.10 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 16 29825766 29825766 C T PRRT2 Missense_Mutation p.S331F 0.08 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-G4-6302-01 16 29917164 29917164 C T ASPHD1 Silent p.N373N 0.08 TCGA-G4-6302-01 16 30035332 30035332 G T C16orf92 Missense_Mutation p.G101V 0.05 deleterious(0.03) probably_damaging(0.988) TCGA-G4-6302-01 16 30122822 30122822 G T GDPD3 Silent p.S198S 0.08 TCGA-G4-6302-01 16 30123523 30123523 C T GDPD3 Missense_Mutation p.R168H 0.07 tolerated(0.48) benign(0.021) TCGA-G4-6302-01 16 3063750 3063750 C T CLDN9 Silent p.G129G 0.10 TCGA-G4-6302-01 16 30676049 30676049 C T FBRS Silent p.I457I 0.11 TCGA-G4-6302-01 16 30744954 30744954 G A SRCAP Missense_Mutation p.R2110H 0.12 probably_damaging(0.978) TCGA-G4-6302-01 16 3080485 3080485 G A CCDC64B Silent p.L243L 0.14 TCGA-G4-6302-01 16 31045645 31045648 GAGT - STX4 Splice_Site p.X78_splice 0.11 TCGA-G4-6302-01 16 31342506 31342506 G A ITGAM Silent p.P1100P 0.10 TCGA-G4-6302-01 16 31473911 31473911 T C ARMC5 Missense_Mutation p.L348P 0.11 deleterious(0) probably_damaging(0.996) TCGA-G4-6302-01 16 46729958 46729958 C T ORC6 Missense_Mutation p.R198W 0.09 tolerated(0.08) benign(0.001) TCGA-G4-6302-01 16 47727375 47727375 G A PHKB Missense_Mutation p.R951H 0.10 deleterious(0) probably_damaging(0.991) TCGA-G4-6302-01 16 4780093 4780093 T C ANKS3 Missense_Mutation p.M20V 0.12 tolerated(0.23) benign(0.045) TCGA-G4-6302-01 16 49315114 49315114 T C CBLN1 Missense_Mutation p.Q88R 0.09 tolerated(0.1) benign(0.02) TCGA-G4-6302-01 16 53301937 53301937 G A CHD9 Missense_Mutation p.C1539Y 0.10 probably_damaging(0.993) TCGA-G4-6302-01 16 53320161 53320161 C T CHD9 Nonsense_Mutation p.R1699* 0.11 TCGA-G4-6302-01 16 55719149 55719149 G A SLC6A2 Missense_Mutation p.V247I 0.10 tolerated(1) benign(0.004) TCGA-G4-6302-01 16 56368671 56368671 C T GNAO1 Silent p.A165A 0.06 TCGA-G4-6302-01 16 57490463 57490463 C T COQ9 Silent p.G142G 0.10 TCGA-G4-6302-01 16 58318533 58318533 G A PRSS54 Silent p.C205C 0.05 TCGA-G4-6302-01 16 618994 618994 G - PIGQ 5'Flank 0.11 TCGA-G4-6302-01 16 66436911 66436911 G T CDH5 Missense_Mutation p.G732C 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 16 66974400 66974400 C T CES2 Silent p.R270R 0.08 TCGA-G4-6302-01 16 67333379 67333379 C A KCTD19 Silent p.L291L 0.08 TCGA-G4-6302-01 16 67961489 67961489 C T PSKH1 Missense_Mutation p.R407W 0.10 deleterious(0.04) probably_damaging(0.993) TCGA-G4-6302-01 16 69369128 69369128 C T COG8 Missense_Mutation p.V237I 0.11 tolerated(0.21) benign(0.027) TCGA-G4-6302-01 16 71103385 71103386 AT - HYDIN Frame_Shift_Del p.I586Mfs*5 0.09 TCGA-G4-6302-01 16 71885153 71885153 A G ATXN1L Missense_Mutation p.K504E 0.08 deleterious(0) probably_damaging(0.97) TCGA-G4-6302-01 16 72821238 72821238 C T ZFHX3 Missense_Mutation p.C3646Y 0.10 unknown(0) TCGA-G4-6302-01 16 75258034 75258034 G T CTRB1 Missense_Mutation p.R193M 0.09 tolerated(0.1) benign(0.014) TCGA-G4-6302-01 16 75564180 75564180 G T CHST5 Missense_Mutation p.L35I 0.13 tolerated(0.18) probably_damaging(0.99) TCGA-G4-6302-01 16 75564810 75564810 G - CHST5 5'UTR 0.11 TCGA-G4-6302-01 16 76556020 76556020 A T CNTNAP4 Missense_Mutation p.N801I 0.07 deleterious(0) possibly_damaging(0.883) TCGA-G4-6302-01 16 7726800 7726800 G A RBFOX1 Missense_Mutation p.A340T 0.11 tolerated(0.12) possibly_damaging(0.821) TCGA-G4-6302-01 16 773910 773910 T C CCDC78 Silent p.S360S 0.08 TCGA-G4-6302-01 16 78458906 78458906 C T WWOX Missense_Mutation p.R249C 0.10 deleterious(0.02) benign(0.003) TCGA-G4-6302-01 16 83948704 83948704 G A MLYCD Silent p.S364S 0.11 TCGA-G4-6302-01 16 87393919 87393919 G A FBXO31 Missense_Mutation p.R132W 0.15 deleterious(0) possibly_damaging(0.836) TCGA-G4-6302-01 16 8858631 8858631 G T ABAT Missense_Mutation p.A162S 0.09 tolerated(0.3) benign(0.003) TCGA-G4-6302-01 16 88958846 88958846 A G CBFA2T3 Missense_Mutation p.C143R 0.10 deleterious(0) benign(0.004) TCGA-G4-6302-01 16 89347765 89347765 C T ANKRD11 Missense_Mutation p.A1729T 0.13 benign(0.006) TCGA-G4-6302-01 16 89348066 89348066 G A ANKRD11 Silent p.D1628D 0.16 TCGA-G4-6302-01 16 89348565 89348566 - TCT ANKRD11 In_Frame_Ins p.K1461dup 0.09 TCGA-G4-6302-01 16 89755673 89755673 G A CDK10 Missense_Mutation p.R34Q 0.08 deleterious(0.01) possibly_damaging(0.775) TCGA-G4-6302-01 17 10370010 10370010 C T MYH4 Missense_Mutation p.R18Q 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6302-01 17 12897099 12897099 T C ELAC2 Missense_Mutation p.I720V 0.10 tolerated(0.21) benign(0.12) TCGA-G4-6302-01 17 15162486 15162486 C T PMP22 Missense_Mutation p.A35T 0.07 tolerated(0.73) benign(0.002) TCGA-G4-6302-01 17 15443725 15443725 A G TVP23C Intron 0.09 TCGA-G4-6302-01 17 1577064 1577064 C T PRPF8 Missense_Mutation p.R1141H 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 17 17049353 17049353 G A MPRIP Missense_Mutation p.D385N 0.07 deleterious(0.05) possibly_damaging(0.758) TCGA-G4-6302-01 17 17064651 17064651 G A MPRIP Missense_Mutation p.R715H 0.11 deleterious(0) probably_damaging(0.977) TCGA-G4-6302-01 17 18042202 18042202 G A MYO15A Silent p.P1695P 0.10 TCGA-G4-6302-01 17 1840166 1840166 G A RTN4RL1 Missense_Mutation p.T317M 0.11 tolerated(0.06) benign(0.372) TCGA-G4-6302-01 17 18834049 18834049 A C PRPSAP2 3'UTR 0.10 TCGA-G4-6302-01 17 1939270 1939270 G A DPH1 Silent p.T100T 0.08 TCGA-G4-6302-01 17 26096036 26096036 G A NOS2 Silent p.D667D 0.13 TCGA-G4-6302-01 17 26695997 26695997 C T VTN Missense_Mutation p.R241Q 0.11 deleterious(0.02) possibly_damaging(0.775) TCGA-G4-6302-01 17 27031171 27031171 C T PROCA1 Missense_Mutation p.C139Y 0.13 tolerated(0.38) benign(0.026) TCGA-G4-6302-01 17 27042854 27042854 C T RAB34 Missense_Mutation p.R150Q 0.05 deleterious(0.04) probably_damaging(0.951) TCGA-G4-6302-01 17 27043034 27043034 C A RAB34 Silent p.V120V 0.12 TCGA-G4-6302-01 17 27284506 27284506 G A SEZ6 Missense_Mutation p.S785F 0.10 deleterious(0) probably_damaging(0.985) TCGA-G4-6302-01 17 27401935 27401935 G A TIAF1 5'UTR 0.06 TCGA-G4-6302-01 17 30551778 30551778 A - RHOT1 3'UTR 0.09 TCGA-G4-6302-01 17 31319917 31319917 G A SPACA3 Intron 0.09 TCGA-G4-6302-01 17 32583310 32583310 C T CCL2 Missense_Mutation p.A49V 0.09 tolerated(0.32) benign(0.002) TCGA-G4-6302-01 17 32687560 32687560 C T CCL1 3'UTR 0.13 TCGA-G4-6302-01 17 33462270 33462270 G A NLE1 Silent p.G404G 0.10 TCGA-G4-6302-01 17 33805188 33805188 G T SLFN12L Silent p.P370P 0.07 TCGA-G4-6302-01 17 3436143 3436143 C T TRPV3 Silent p.S291S 0.11 TCGA-G4-6302-01 17 35518909 35518909 C T ACACA Missense_Mutation p.R1712Q 0.07 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 17 3560043 3560043 C T CTNS Missense_Mutation p.A212V 0.07 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 17 3654947 3654947 C T ITGAE Silent p.S630S 0.13 TCGA-G4-6302-01 17 37359356 37359356 G A RPL19 Missense_Mutation p.R117H 0.07 tolerated(0.22) benign(0.005) TCGA-G4-6302-01 17 38182546 38182547 - A MED24 Frame_Shift_Ins p.A617Gfs*19 0.08 TCGA-G4-6302-01 17 38249639 38249639 C A THRA 3'UTR 0.17 TCGA-G4-6302-01 17 39150335 39150335 G T KRTAP3-3 Silent p.A5A 0.11 TCGA-G4-6302-01 17 39520137 39520137 G T KRT33B Missense_Mutation p.P389H 0.13 deleterious(0) possibly_damaging(0.614) TCGA-G4-6302-01 17 39580751 39580751 A C KRT37 Missense_Mutation p.S9A 0.07 tolerated(0.1) benign(0.035) TCGA-G4-6302-01 17 39724513 39724513 C T KRT9 Missense_Mutation p.C432Y 0.10 tolerated(0.29) probably_damaging(0.993) TCGA-G4-6302-01 17 40666473 40666473 A G ATP6V0A1 Silent p.L806L 0.11 TCGA-G4-6302-01 17 40705188 40705188 G T HSD17B1 Missense_Mutation p.E48D 0.09 tolerated(0.07) benign(0.047) TCGA-G4-6302-01 17 40849308 40849308 T C CNTNAP1 Missense_Mutation p.L1164P 0.11 tolerated(0.37) benign(0.004) TCGA-G4-6302-01 17 40948045 40948045 G A WNK4 Missense_Mutation p.R1142Q 0.10 deleterious(0.02) possibly_damaging(0.52) TCGA-G4-6302-01 17 40997346 40997346 C T AOC2 Missense_Mutation p.H235Y 0.11 deleterious(0) possibly_damaging(0.671) TCGA-G4-6302-01 17 41113245 41113245 A G AARSD1 Missense_Mutation p.W99R 0.08 deleterious(0) probably_damaging(0.985) TCGA-G4-6302-01 17 41256250 41256251 - T BRCA1 Frame_Shift_Ins p.E111Gfs*3 0.08 TCGA-G4-6302-01 17 41478374 41478374 G A ARL4D 3'UTR 0.11 TCGA-G4-6302-01 17 41891664 41891664 T C MPP3 Missense_Mutation p.M359V 0.14 tolerated(0.56) benign(0) TCGA-G4-6302-01 17 42461946 42461946 C T ITGA2B Silent p.S269S 0.07 TCGA-G4-6302-01 17 42855528 42855528 G A ADAM11 Missense_Mutation p.G732S 0.13 tolerated(0.33) benign(0.353) TCGA-G4-6302-01 17 42956967 42956967 C T EFTUD2 Missense_Mutation p.R220H 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6302-01 17 43214421 43214421 G A ACBD4 Silent p.E110E 0.12 TCGA-G4-6302-01 17 45009562 45009562 T C GOSR2 Silent p.T111T 0.10 TCGA-G4-6302-01 17 46671033 46671033 G A HOXB5 Silent p.Y4Y 0.07 TCGA-G4-6302-01 17 4805861 4805861 C T C17orf107 3'UTR 0.10 TCGA-G4-6302-01 17 48734410 48734410 C A ABCC3 Missense_Mutation p.L118M 0.10 deleterious(0) possibly_damaging(0.863) TCGA-G4-6302-01 17 4889569 4889569 G - CAMTA2 Frame_Shift_Del p.S7Pfs*9 0.10 TCGA-G4-6302-01 17 5364289 5364289 G A DHX33 Silent p.A273A 0.11 TCGA-G4-6302-01 17 54921519 54921519 A - DGKE Frame_Shift_Del p.T204Qfs*6 0.10 TCGA-G4-6302-01 17 54925410 54925410 A G DGKE Missense_Mutation p.D291G 0.07 deleterious(0.03) probably_damaging(1) TCGA-G4-6302-01 17 56388261 56388261 G - BZRAP1 Frame_Shift_Del p.P1132Lfs*97 0.09 TCGA-G4-6302-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.21 TCGA-G4-6302-01 17 57754460 57754460 C T CLTC Missense_Mutation p.R903C 0.10 tolerated(0.08) benign(0.007) TCGA-G4-6302-01 17 57917210 57917210 A G VMP1 Missense_Mutation p.M387V 0.10 deleterious(0.01) possibly_damaging(0.561) TCGA-G4-6302-01 17 5998434 5998434 C T WSCD1 Missense_Mutation p.T247I 0.07 tolerated(1) benign(0.003) TCGA-G4-6302-01 17 60484400 60484400 G A EFCAB3 Missense_Mutation p.G284S 0.10 tolerated(0.49) benign(0.031) TCGA-G4-6302-01 17 60814114 60814114 C A MARCH10 Missense_Mutation p.R372M 0.08 deleterious(0.02) benign(0.11) TCGA-G4-6302-01 17 61497894 61497894 C - TANC2 Frame_Shift_Del p.P1519Lfs*33 0.13 TCGA-G4-6302-01 17 61893007 61893007 C T DDX42 Missense_Mutation p.R663W 0.06 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 17 62796297 62796297 C T PLEKHM1P RNA 0.09 TCGA-G4-6302-01 17 6381938 6381938 C T PITPNM3 Missense_Mutation p.V236I 0.10 deleterious(0.02) benign(0.077) TCGA-G4-6302-01 17 66447028 66447028 C T WIPI1 Silent p.P58P 0.09 TCGA-G4-6302-01 17 70120214 70120215 - A SOX9 Frame_Shift_Ins p.H406Qfs*172 0.08 TCGA-G4-6302-01 17 7129817 7129817 C T DVL2 Missense_Mutation p.S562N 0.10 tolerated(0.4) possibly_damaging(0.517) TCGA-G4-6302-01 17 7246777 7246777 G A ACAP1 Missense_Mutation p.A142T 0.09 deleterious(0) possibly_damaging(0.711) TCGA-G4-6302-01 17 72948013 72948013 C T HID1 Missense_Mutation p.V764I 0.14 tolerated(0.17) benign(0.113) TCGA-G4-6302-01 17 73237512 73237512 C A GGA3 Missense_Mutation p.E305D 0.09 tolerated(0.34) benign(0.147) TCGA-G4-6302-01 17 73467903 73467903 A G KIAA0195 5'UTR 0.10 TCGA-G4-6302-01 17 73725373 73725373 C A ITGB4 Missense_Mutation p.D198E 0.13 tolerated(0.08) benign(0.12) TCGA-G4-6302-01 17 73831948 73831948 C A UNC13D Missense_Mutation p.E528D 0.18 deleterious(0.01) benign(0.242) TCGA-G4-6302-01 17 73843895 73843895 A G WBP2 Missense_Mutation p.Y172H 0.09 tolerated(0.14) possibly_damaging(0.873) TCGA-G4-6302-01 17 74566714 74566714 C T ST6GALNAC2 Missense_Mutation p.D236N 0.12 probably_damaging(0.991) TCGA-G4-6302-01 17 7480734 7480734 C T EIF4A1 Missense_Mutation p.R233W 0.12 deleterious(0.03) benign(0.011) TCGA-G4-6302-01 17 7577138 7577138 C T TP53 Missense_Mutation p.R267Q 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-G4-6302-01 17 7579929 7579929 G A TP53 5'UTR 0.09 TCGA-G4-6302-01 17 7611377 7611377 A T EFNB3 Missense_Mutation p.N75I 0.06 deleterious(0.02) benign(0.212) TCGA-G4-6302-01 17 76567098 76567098 C T DNAH17 Missense_Mutation p.D284N 0.16 benign(0.414) TCGA-G4-6302-01 17 7684069 7684069 G A DNAH2 Missense_Mutation p.R1991H 0.11 probably_damaging(0.992) TCGA-G4-6302-01 17 7801844 7801844 G A CHD3 Silent p.Q753Q 0.08 TCGA-G4-6302-01 17 79100287 79100287 C T AATK Missense_Mutation p.R232H 0.11 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 17 80047147 80047147 T C FASN Silent p.P693P 0.11 TCGA-G4-6302-01 17 8047114 8047114 G T PER1 Missense_Mutation p.P848T 0.05 tolerated(0.15) benign(0.002) TCGA-G4-6302-01 17 9605017 9605017 G T USP43 Missense_Mutation p.A671S 0.11 deleterious(0) probably_damaging(0.992) TCGA-G4-6302-01 17 9873066 9873066 G A GAS7 Silent p.H133H 0.10 TCGA-G4-6302-01 18 13057592 13057592 C T CEP192 Nonsense_Mutation p.R1373* 0.09 TCGA-G4-6302-01 18 21056998 21056998 C T RIOK3 Missense_Mutation p.T401M 0.11 tolerated(0.05) benign(0.009) TCGA-G4-6302-01 18 21427446 21427446 G A LAMA3 Missense_Mutation p.R1317H 0.16 benign(0.05) TCGA-G4-6302-01 18 32888086 32888090 AAAAC - ZNF271 RNA 0.08 TCGA-G4-6302-01 18 34853047 34853047 G A CELF4 Missense_Mutation p.A294V 0.12 tolerated(0.41) probably_damaging(0.995) TCGA-G4-6302-01 18 43462254 43462254 T C EPG5 Missense_Mutation p.R1835G 0.13 deleterious(0) probably_damaging(0.943) TCGA-G4-6302-01 18 50278454 50278454 G A DCC Missense_Mutation p.R41H 0.06 tolerated(0.4) benign(0.003) TCGA-G4-6302-01 18 56409219 56409219 C T MALT1 Missense_Mutation p.R576W 0.10 deleterious(0) probably_damaging(0.997) TCGA-G4-6302-01 18 57103305 57103305 C A CCBE1 Silent p.L352L 0.10 TCGA-G4-6302-01 18 59949577 59949577 G A KIAA1468 Silent p.L1051L 0.10 TCGA-G4-6302-01 18 65182415 65182415 A C DSEL 5'UTR 0.09 TCGA-G4-6302-01 18 7012005 7012005 C T LAMA1 Missense_Mutation p.V1166M 0.12 deleterious(0.01) benign(0.085) TCGA-G4-6302-01 18 74962902 74962902 G A GALR1 Missense_Mutation p.R133H 0.11 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 18 76753324 76753324 G A SALL3 Missense_Mutation p.E445K 0.17 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 18 76754865 76754865 G T SALL3 Missense_Mutation p.E958D 0.10 tolerated(0.19) possibly_damaging(0.636) TCGA-G4-6302-01 18 77679388 77679389 - G PQLC1 Frame_Shift_Ins p.H135Pfs*32 0.08 TCGA-G4-6302-01 18 77733802 77733802 C T TXNL4A Nonsense_Mutation p.W104* 0.07 TCGA-G4-6302-01 18 77895396 77895396 C T ADNP2 Silent p.N700N 0.14 TCGA-G4-6302-01 19 10406054 10406054 C - ICAM5 Frame_Shift_Del p.P756Lfs*12 0.14 TCGA-G4-6302-01 19 1054632 1054632 G A ABCA7 Missense_Mutation p.G1264R 0.11 deleterious(0.02) possibly_damaging(0.758) TCGA-G4-6302-01 19 11557119 11557119 A G PRKCSH Missense_Mutation p.E239G 0.10 deleterious(0.03) benign(0.042) TCGA-G4-6302-01 19 11598152 11598152 T C ZNF653 Missense_Mutation p.S376G 0.15 tolerated(0.36) benign(0) TCGA-G4-6302-01 19 12542075 12542075 G C ZNF443 Missense_Mutation p.T304S 0.12 tolerated(0.36) probably_damaging(0.986) TCGA-G4-6302-01 19 12786670 12786670 A G DHPS Silent p.H364H 0.11 TCGA-G4-6302-01 19 12962747 12962747 G T MAST1 Splice_Site p.X259_splice 0.08 TCGA-G4-6302-01 19 14029389 14029389 G A CC2D1A Missense_Mutation p.D316N 0.11 tolerated(0.09) benign(0.051) TCGA-G4-6302-01 19 14272274 14272274 C T LPHN1 Missense_Mutation p.A459T 0.10 tolerated(0.15) benign(0.284) TCGA-G4-6302-01 19 14582448 14582448 C T PKN1 Missense_Mutation p.T900M 0.10 deleterious(0.01) possibly_damaging(0.649) TCGA-G4-6302-01 19 1484127 1484127 C A PCSK4 Splice_Site p.X357_splice 0.15 TCGA-G4-6302-01 19 15072941 15072941 C T SLC1A6 Missense_Mutation p.G270S 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 19 15537943 15537943 C T WIZ Missense_Mutation p.A311T 0.13 tolerated(0.09) benign(0.043) TCGA-G4-6302-01 19 17387355 17387355 G A BABAM1 Silent p.P207P 0.08 TCGA-G4-6302-01 19 17688176 17688176 A G COLGALT1 Missense_Mutation p.M345V 0.09 tolerated(0.24) benign(0.02) TCGA-G4-6302-01 19 17883523 17883523 A C FCHO1 Missense_Mutation p.S255R 0.10 tolerated(0.06) possibly_damaging(0.699) TCGA-G4-6302-01 19 18507294 18507294 G A LRRC25 Silent p.G160G 0.09 TCGA-G4-6302-01 19 18958623 18958623 C T UPF1 Missense_Mutation p.R148C 0.16 deleterious(0.01) possibly_damaging(0.651) TCGA-G4-6302-01 19 18990123 18990123 G T CERS1 Missense_Mutation p.P276H 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-G4-6302-01 19 19612086 19612086 A G GATAD2A Missense_Mutation p.H454R 0.09 deleterious(0) probably_damaging(0.98) TCGA-G4-6302-01 19 19654744 19654744 G A CILP2 Missense_Mutation p.G464S 0.11 tolerated(0.21) benign(0.091) TCGA-G4-6302-01 19 21607814 21607814 C A ZNF493 3'UTR 0.12 TCGA-G4-6302-01 19 22193725 22193725 G A ZNF208 5'UTR 0.11 TCGA-G4-6302-01 19 22363969 22363969 G T ZNF676 Missense_Mutation p.L184I 0.10 deleterious(0.02) probably_damaging(0.944) TCGA-G4-6302-01 19 22574128 22574128 T - ZNF98 3'UTR 0.11 TCGA-G4-6302-01 19 22939463 22939463 A G ZNF99 3'Flank 0.22 TCGA-G4-6302-01 19 3006458 3006458 T C TLE2 Missense_Mutation p.Q487R 0.13 tolerated(0.07) benign(0.011) TCGA-G4-6302-01 19 31768228 31768228 G A TSHZ3 Missense_Mutation p.T824M 0.10 tolerated(0.18) benign(0.256) TCGA-G4-6302-01 19 31769687 31769687 C T TSHZ3 Missense_Mutation p.G338S 0.11 tolerated(0.27) benign(0.101) TCGA-G4-6302-01 19 33090616 33090616 C A ANKRD27 Missense_Mutation p.L971F 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-G4-6302-01 19 33873379 33873379 G A CEBPG 3'UTR 0.11 TCGA-G4-6302-01 19 34303651 34303651 C A KCTD15 Intron 0.09 TCGA-G4-6302-01 19 35512898 35512898 C T GRAMD1A Silent p.G599G 0.07 TCGA-G4-6302-01 19 35786346 35786346 T C MAG Missense_Mutation p.I12T 0.08 deleterious(0.04) benign(0.236) TCGA-G4-6302-01 19 35850562 35850562 G T FFAR3 Missense_Mutation p.W257L 0.03 deleterious(0) probably_damaging(0.98) TCGA-G4-6302-01 19 3589867 3589867 T C GIPC3 Silent p.D248D 0.11 TCGA-G4-6302-01 19 35991301 35991301 C A DMKN Intron 0.10 TCGA-G4-6302-01 19 3612100 3612100 C T CACTIN Missense_Mutation p.A700T 0.09 tolerated(0.5) benign(0.136) TCGA-G4-6302-01 19 36728653 36728653 A - ZNF146 3'UTR 0.09 TCGA-G4-6302-01 19 38877850 38877850 G T GGN Missense_Mutation p.Q18K 0.11 deleterious_low_confidence(0) unknown(0) TCGA-G4-6302-01 19 39667281 39667281 C T PAK4 Nonsense_Mutation p.R471* 0.07 TCGA-G4-6302-01 19 41255653 41255653 G T C19orf54 Missense_Mutation p.P19H 0.10 tolerated_low_confidence(0.15) unknown(0) TCGA-G4-6302-01 19 41785036 41785036 G A HNRNPUL1 Missense_Mutation p.V281M 0.09 deleterious(0.02) unknown(0) TCGA-G4-6302-01 19 41808716 41808716 C T HNRNPUL1 Nonsense_Mutation p.R612* 0.12 TCGA-G4-6302-01 19 42799060 42799060 G A CIC Missense_Mutation p.R1515H 0.13 probably_damaging(0.964) TCGA-G4-6302-01 19 42806282 42806282 T C PAFAH1B3 Intron 0.11 TCGA-G4-6302-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.10 TCGA-G4-6302-01 19 42891261 42891261 G A CNFN 3'UTR 0.13 TCGA-G4-6302-01 19 43414783 43414783 G A PSG6 Missense_Mutation p.R219W 0.10 tolerated(0.17) benign(0.022) TCGA-G4-6302-01 19 46026030 46026030 G A VASP Missense_Mutation p.G259R 0.09 deleterious(0) probably_damaging(0.988) TCGA-G4-6302-01 19 46404803 46404803 G A MYPOP Nonsense_Mutation p.Q77* 0.11 TCGA-G4-6302-01 19 47236474 47236474 A G STRN4 Missense_Mutation p.Y187H 0.10 deleterious(0) possibly_damaging(0.643) TCGA-G4-6302-01 19 47548479 47548479 C A NPAS1 Missense_Mutation p.A448D 0.14 tolerated(0.15) benign(0.063) TCGA-G4-6302-01 19 49002660 49002660 C T LMTK3 Missense_Mutation p.D585N 0.19 probably_damaging(0.953) TCGA-G4-6302-01 19 49004262 49004262 G A LMTK3 Missense_Mutation p.A410V 0.11 benign(0.358) TCGA-G4-6302-01 19 49387020 49387020 C T TULP2 Silent p.Q422Q 0.12 TCGA-G4-6302-01 19 49391412 49391412 G A TULP2 Missense_Mutation p.T248M 0.10 tolerated(0.13) benign(0.032) TCGA-G4-6302-01 19 49611672 49611672 G T SNRNP70 Missense_Mutation p.G429V 0.11 deleterious_low_confidence(0) unknown(0) TCGA-G4-6302-01 19 49646173 49646173 G A PPFIA3 Missense_Mutation p.S886N 0.14 deleterious(0.02) benign(0.144) TCGA-G4-6302-01 19 50027967 50027967 G T FCGRT Missense_Mutation p.D269Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 19 50063881 50063881 G A NOSIP Missense_Mutation p.T23I 0.08 deleterious(0.01) possibly_damaging(0.817) TCGA-G4-6302-01 19 50482438 50482438 G A VRK3 Silent p.Y446Y 0.11 TCGA-G4-6302-01 19 50826970 50826970 G A KCNC3 Missense_Mutation p.R414W 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 19 51009663 51009663 C T JOSD2 Missense_Mutation p.E147K 0.09 tolerated(0.36) benign(0.011) TCGA-G4-6302-01 19 51298411 51298411 T C ACPT Missense_Mutation p.V426A 0.10 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-G4-6302-01 19 52395100 52395100 T - ZNF649 Frame_Shift_Del p.I97Yfs*2 0.08 TCGA-G4-6302-01 19 53209299 53209299 C T ZNF611 Missense_Mutation p.D337N 0.07 deleterious(0) benign(0) TCGA-G4-6302-01 19 53911593 53911593 G A ZNF765 Missense_Mutation p.R262H 0.13 tolerated(0.32) benign(0.031) TCGA-G4-6302-01 19 54445372 54445372 G T CACNG7 Missense_Mutation p.R218L 0.15 deleterious(0) benign(0.393) TCGA-G4-6302-01 19 54631568 54631568 G A PRPF31 Missense_Mutation p.G356S 0.12 deleterious(0.03) probably_damaging(1) TCGA-G4-6302-01 19 56156364 56156364 C T ZNF581 Missense_Mutation p.R143W 0.17 deleterious(0) probably_damaging(0.995) TCGA-G4-6302-01 19 5616316 5616316 G A SAFB2 Nonsense_Mutation p.Q124* 0.09 TCGA-G4-6302-01 19 5790114 5790114 G A DUS3L Missense_Mutation p.P111S 0.05 deleterious(0.01) benign(0.045) TCGA-G4-6302-01 19 581490 581490 C T BSG Missense_Mutation p.A323V 0.12 deleterious(0) probably_damaging(0.985) TCGA-G4-6302-01 19 58265148 58265148 T C ZNF776 Missense_Mutation p.F217S 0.08 tolerated(0.22) benign(0.161) TCGA-G4-6302-01 19 5832226 5832226 G T FUT6 Missense_Mutation p.A118D 0.11 tolerated(0.24) benign(0.315) TCGA-G4-6302-01 19 58565260 58565260 C - ZSCAN1 Frame_Shift_Del p.R358Gfs*92 0.09 TCGA-G4-6302-01 19 58850450 58850450 G A ZSCAN22 Missense_Mutation p.A412T 0.08 tolerated(0.39) benign(0.015) TCGA-G4-6302-01 19 59073415 59073415 G A MZF1 3'UTR 0.10 TCGA-G4-6302-01 19 620452 620452 C T POLRMT Nonsense_Mutation p.W892* 0.11 TCGA-G4-6302-01 19 7607530 7607530 G - PNPLA6 Frame_Shift_Del p.S457Pfs*59 0.12 TCGA-G4-6302-01 19 7682537 7682537 G A CAMSAP3 Missense_Mutation p.R1172H 0.07 deleterious(0) probably_damaging(0.97) TCGA-G4-6302-01 19 7975344 7975344 C T MAP2K7 Missense_Mutation p.R152W 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 19 8467115 8467115 C A RAB11B Missense_Mutation p.L128M 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6302-01 19 8503464 8503464 C T MARCH2 3'UTR 0.17 TCGA-G4-6302-01 19 8620596 8620596 C T MYO1F Missense_Mutation p.E30K 0.11 deleterious(0) probably_damaging(0.991) TCGA-G4-6302-01 19 8807842 8807842 C T ACTL9 Missense_Mutation p.E404K 0.14 tolerated(0.15) possibly_damaging(0.503) TCGA-G4-6302-01 19 9046479 9046479 C T MUC16 Missense_Mutation p.V11718I 0.11 benign(0.007) TCGA-G4-6302-01 19 9049655 9049655 G A MUC16 Missense_Mutation p.S10659L 0.11 benign(0.097) TCGA-G4-6302-01 19 9068329 9068329 T C MUC16 Missense_Mutation p.T6373A 0.13 unknown(0) TCGA-G4-6302-01 1 100327111 100327111 C T AGL Silent p.T45T 0.15 TCGA-G4-6302-01 1 101490997 101490997 C T DPH5 Translation_Start_Site p.M1? 0.13 deleterious(0) possibly_damaging(0.905) TCGA-G4-6302-01 1 103491499 103491499 A T COL11A1 Intron 0.06 TCGA-G4-6302-01 1 109366208 109366208 C A AKNAD1 Missense_Mutation p.C680F 0.08 tolerated(0.35) benign(0.006) TCGA-G4-6302-01 1 109794538 109794538 C A CELSR2 Missense_Mutation p.P613T 0.09 tolerated(0.07) benign(0.206) TCGA-G4-6302-01 1 109795938 109795938 G A CELSR2 Silent p.T1079T 0.07 TCGA-G4-6302-01 1 109805850 109805850 G A CELSR2 Missense_Mutation p.E1599K 0.08 tolerated(0.14) benign(0.103) TCGA-G4-6302-01 1 110038895 110038895 C T CYB561D1 3'UTR 0.10 TCGA-G4-6302-01 1 111494024 111494024 G A LRIF1 Silent p.A494A 0.10 TCGA-G4-6302-01 1 111957057 111957057 T G OVGP1 3'UTR 0.08 TCGA-G4-6302-01 1 114506108 114506108 C T HIPK1 Missense_Mutation p.R735W 0.13 deleterious(0.01) possibly_damaging(0.814) TCGA-G4-6302-01 1 114944082 114944082 A G TRIM33 Missense_Mutation p.C966R 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 1 1154006 1154006 G A SDF4 Silent p.D248D 0.11 TCGA-G4-6302-01 1 116380692 116380692 C T NHLH2 Missense_Mutation p.R101H 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6302-01 1 1177924 1177924 G A FAM132A 3'UTR 0.11 TCGA-G4-6302-01 1 120437102 120437102 T A ADAM30 Nonsense_Mutation p.K620* 0.12 TCGA-G4-6302-01 1 1268899 1268899 C T TAS1R3 Silent p.C538C 0.12 TCGA-G4-6302-01 1 12888501 12888501 C T PRAMEF11 Missense_Mutation p.R8H 0.06 tolerated(1) benign(0.006) TCGA-G4-6302-01 1 1354790 1354790 G A ANKRD65 Missense_Mutation p.A297V 0.11 tolerated(0.06) unknown(0) TCGA-G4-6302-01 1 1375480 1375480 C T VWA1 3'UTR 0.10 TCGA-G4-6302-01 1 13910453 13910453 G A PDPN Silent p.P51P 0.11 TCGA-G4-6302-01 1 145518238 145518238 G A PEX11B Missense_Mutation p.V114M 0.11 tolerated(0.13) benign(0.081) TCGA-G4-6302-01 1 149871883 149871883 G A BOLA1 Missense_Mutation p.A91T 0.13 tolerated(0.48) benign(0.005) TCGA-G4-6302-01 1 150482005 150482005 A C ECM1 Splice_Site p.X24_splice 0.14 TCGA-G4-6302-01 1 151140731 151140731 C T SCNM1 Silent p.A170A 0.11 TCGA-G4-6302-01 1 151373004 151373004 G A PSMB4 Missense_Mutation p.R145H 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 1 151633273 151633273 G T SNX27 Splice_Site p.X246_splice 0.11 TCGA-G4-6302-01 1 151739680 151739680 G A OAZ3 Missense_Mutation p.R25H 0.12 tolerated(0.06) benign(0.009) TCGA-G4-6302-01 1 152127305 152127305 C T RPTN Missense_Mutation p.R757Q 0.10 tolerated(1) benign(0.001) TCGA-G4-6302-01 1 152192650 152192650 T C HRNR Silent p.S485S 0.10 TCGA-G4-6302-01 1 152800069 152800069 T G LCE1A Missense_Mutation p.S41A 0.10 deleterious_low_confidence(0) unknown(0) TCGA-G4-6302-01 1 153122475 153122475 G A SPRR2G Missense_Mutation p.P38S 0.08 unknown(0) TCGA-G4-6302-01 1 153915512 153915512 G T DENND4B Missense_Mutation p.P138T 0.09 tolerated(0.59) probably_damaging(0.997) TCGA-G4-6302-01 1 153923814 153923814 G A CRTC2 Silent p.A442A 0.10 TCGA-G4-6302-01 1 154520240 154520240 C A TDRD10 3'UTR 0.06 TCGA-G4-6302-01 1 154548259 154548259 G A CHRNB2 Missense_Mutation p.V454I 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6302-01 1 155002938 155002938 G A DCST2 Missense_Mutation p.T330M 0.11 tolerated(0.22) benign(0.028) TCGA-G4-6302-01 1 155313141 155313141 T C ASH1L Missense_Mutation p.T2753A 0.07 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-G4-6302-01 1 155313979 155313979 C T ASH1L Missense_Mutation p.R2659H 0.11 tolerated_low_confidence(0.33) benign(0.18) TCGA-G4-6302-01 1 156084863 156084863 C G LMNA Missense_Mutation p.L52V 0.08 deleterious(0) probably_damaging(0.954) TCGA-G4-6302-01 1 1563426 1563426 T C MIB2 Missense_Mutation p.S685P 0.07 deleterious(0.03) benign(0.395) TCGA-G4-6302-01 1 156894752 156894752 G A LRRC71 Missense_Mutation p.D180N 0.10 deleterious(0.01) benign(0.439) TCGA-G4-6302-01 1 156907252 156907252 G A ARHGEF11 Missense_Mutation p.P1410L 0.09 tolerated_low_confidence(0.37) benign(0.001) TCGA-G4-6302-01 1 159897629 159897629 A G IGSF9 Silent p.P1093P 0.06 TCGA-G4-6302-01 1 160100270 160100270 G A ATP1A2 Silent p.T570T 0.12 TCGA-G4-6302-01 1 160151514 160151514 C T ATP1A4 Missense_Mutation p.T926M 0.11 deleterious(0) probably_damaging(0.982) TCGA-G4-6302-01 1 16051935 16051935 C T PLEKHM2 Missense_Mutation p.T279I 0.14 deleterious_low_confidence(0.03) benign(0.017) TCGA-G4-6302-01 1 160914864 160914864 T - ITLN2 3'UTR 0.17 TCGA-G4-6302-01 1 161088531 161088534 TTGC - NIT1 Intron 0.11 TCGA-G4-6302-01 1 162344175 162344175 G T C1orf111 Missense_Mutation p.P150H 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-G4-6302-01 1 16259242 16259242 G T SPEN Missense_Mutation p.M2169I 0.07 benign(0.002) TCGA-G4-6302-01 1 166135296 166135296 C T FAM78B Missense_Mutation p.E64K 0.11 tolerated(0.09) benign(0.116) TCGA-G4-6302-01 1 16946461 16946461 C T RP5-1182A14.5 3'Flank 0.04 TCGA-G4-6302-01 1 169564086 169564086 T C SELP Missense_Mutation p.K711E 0.08 tolerated(1) benign(0.001) TCGA-G4-6302-01 1 171510066 171510066 G A PRRC2C Missense_Mutation p.R1152Q 0.06 unknown(0) TCGA-G4-6302-01 1 172038017 172038017 G A DNM3 Missense_Mutation p.R465H 0.06 deleterious(0.02) possibly_damaging(0.615) TCGA-G4-6302-01 1 172222818 172222818 C T DNM3 Nonsense_Mutation p.Q589* 0.14 TCGA-G4-6302-01 1 17303275 17303275 G A MFAP2 Missense_Mutation p.P57S 0.10 tolerated_low_confidence(0.15) benign(0.006) TCGA-G4-6302-01 1 17914909 17914909 T C ARHGEF10L Intron 0.10 TCGA-G4-6302-01 1 180953829 180953829 T A STX6 Silent p.V225V 0.10 TCGA-G4-6302-01 1 181018421 181018421 C T MR1 Missense_Mutation p.R101C 0.09 tolerated(0.14) possibly_damaging(0.759) TCGA-G4-6302-01 1 186099192 186099192 C T HMCN1 Silent p.S4333S 0.04 TCGA-G4-6302-01 1 186287597 186287597 A G TPR Missense_Mutation p.V2268A 0.09 possibly_damaging(0.755) TCGA-G4-6302-01 1 186648287 186648287 G T PTGS2 Missense_Mutation p.N72K 0.10 tolerated(0.44) benign(0.007) TCGA-G4-6302-01 1 18962797 18962797 C A PAX7 Missense_Mutation p.A173E 0.09 tolerated(0.92) benign(0.178) TCGA-G4-6302-01 1 190129875 190129875 C T BRINP3 Silent p.A369A 0.11 TCGA-G4-6302-01 1 19027260 19027261 - C PAX7 Frame_Shift_Ins p.Y303Lfs*61 0.08 TCGA-G4-6302-01 1 200378327 200378327 C - ZNF281 Frame_Shift_Del p.S170Vfs*155 0.12 TCGA-G4-6302-01 1 20141512 20141512 C A RNF186 Missense_Mutation p.G28V 0.09 tolerated(0.13) benign(0.003) TCGA-G4-6302-01 1 202544270 202544271 - C PPP1R12B Intron 0.11 TCGA-G4-6302-01 1 203311557 203311557 G A FMOD Missense_Mutation p.R349C 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 1 206821246 206821246 G A DYRK3 Missense_Mutation p.V235M 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6302-01 1 207106402 207106402 A - PIGR Frame_Shift_Del p.F605Lfs*225 0.13 TCGA-G4-6302-01 1 207943687 207943687 C A CD46 Missense_Mutation p.P323H 0.05 deleterious(0.03) possibly_damaging(0.775) TCGA-G4-6302-01 1 209880129 209880129 G A HSD11B1 Missense_Mutation p.A99T 0.10 tolerated(0.14) benign(0.032) TCGA-G4-6302-01 1 21050623 21050623 C T SH2D5 Missense_Mutation p.R251H 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 1 211654526 211654526 G A RD3 Missense_Mutation p.R78W 0.09 deleterious(0) benign(0.003) TCGA-G4-6302-01 1 212965273 212965273 G A TATDN3 Missense_Mutation p.A4T 0.07 tolerated_low_confidence(0.31) benign(0.06) TCGA-G4-6302-01 1 215792618 215792618 G A KCTD3 Missense_Mutation p.R624Q 0.07 tolerated_low_confidence(0.05) probably_damaging(0.99) TCGA-G4-6302-01 1 215933072 215933072 C T USH2A Missense_Mutation p.G3721R 0.05 possibly_damaging(0.878) TCGA-G4-6302-01 1 22307561 22307561 C T CELA3B Silent p.G86G 0.15 TCGA-G4-6302-01 1 226074686 226074686 C G LEFTY1 Missense_Mutation p.W281S 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 1 226924781 226924781 C G ITPKB Missense_Mutation p.A127P 0.09 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-G4-6302-01 1 228210596 228210596 C T WNT3A Silent p.P100P 0.09 TCGA-G4-6302-01 1 234040782 234040782 G A SLC35F3 5'UTR 0.09 TCGA-G4-6302-01 1 236157168 236157168 C A NID1 Silent p.V844V 0.08 TCGA-G4-6302-01 1 237167624 237167624 C T MT1HL1 Missense_Mutation p.G17S 0.17 tolerated(0.37) unknown(0) TCGA-G4-6302-01 1 237872186 237872186 G A RYR2 Silent p.V3310V 0.12 TCGA-G4-6302-01 1 240370312 240370312 C T FMN2 Missense_Mutation p.R734W 0.08 unknown(0) TCGA-G4-6302-01 1 243303247 243303247 T C CEP170 Missense_Mutation p.R1408G 0.08 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 1 244755013 244755013 T A C1orf101 Missense_Mutation p.D723E 0.06 tolerated(0.13) benign(0.057) TCGA-G4-6302-01 1 246940119 246940119 A T RP11-439E19.10 3'Flank 0.10 TCGA-G4-6302-01 1 248616757 248616757 C T OR2T2 Missense_Mutation p.T220M 0.11 tolerated(0.06) benign(0.229) TCGA-G4-6302-01 1 25554002 25554002 C T SYF2 Missense_Mutation p.R133H 0.11 deleterious(0.03) probably_damaging(0.989) TCGA-G4-6302-01 1 26153282 26153282 G A MTFR1L Missense_Mutation p.R139H 0.10 deleterious(0.04) possibly_damaging(0.887) TCGA-G4-6302-01 1 26310510 26310510 G A PAFAH2 Missense_Mutation p.S160L 0.08 tolerated(0.17) benign(0.004) TCGA-G4-6302-01 1 27681790 27681790 A C MAP3K6 3'UTR 0.13 TCGA-G4-6302-01 1 27697410 27697410 G T FCN3 Silent p.S149S 0.11 TCGA-G4-6302-01 1 27878502 27878502 C T AHDC1 Missense_Mutation p.R42Q 0.10 tolerated_low_confidence(0.05) benign(0.417) TCGA-G4-6302-01 1 32084826 32084826 G - HCRTR1 Frame_Shift_Del p.V13Sfs*65 0.09 TCGA-G4-6302-01 1 34166229 34166229 A - CSMD2 Frame_Shift_Del p.F1167Lfs*6 0.10 TCGA-G4-6302-01 1 34666598 34666598 G A C1orf94 Missense_Mutation p.R412Q 0.09 deleterious_low_confidence(0.04) probably_damaging(0.92) TCGA-G4-6302-01 1 35250927 35250927 C A GJB3 Silent p.T188T 0.05 TCGA-G4-6302-01 1 35251521 35251521 T C GJB3 3'UTR 0.09 TCGA-G4-6302-01 1 35496193 35496193 C T ZMYM6 Silent p.Q16Q 0.12 TCGA-G4-6302-01 1 35650015 35650015 A - SFPQ 3'UTR 0.13 TCGA-G4-6302-01 1 36205040 36205040 T A CLSPN Missense_Mutation p.E1078D 0.08 deleterious(0.03) benign(0.234) TCGA-G4-6302-01 1 36228779 36228780 - T CLSPN Frame_Shift_Ins p.N242Kfs*21 0.08 TCGA-G4-6302-01 1 36916054 36916054 G A OSCP1 5'Flank 0.10 TCGA-G4-6302-01 1 3691940 3691940 G A SMIM1 Translation_Start_Site p.M1? 0.11 deleterious(0) probably_damaging(0.986) TCGA-G4-6302-01 1 3786302 3786302 G A DFFB Missense_Mutation p.S215N 0.12 tolerated(0.51) benign(0.006) TCGA-G4-6302-01 1 39818796 39818796 C T MACF1 Nonsense_Mutation p.Q1711* 0.08 TCGA-G4-6302-01 1 44595246 44595246 C - KLF17 Frame_Shift_Del p.Q103Kfs*9 0.10 TCGA-G4-6302-01 1 45516752 45516752 T G ZSWIM5 Missense_Mutation p.S476R 0.12 tolerated(0.36) unknown(0) TCGA-G4-6302-01 1 45923296 45923296 C T TESK2 Silent p.T54T 0.11 TCGA-G4-6302-01 1 46099257 46099257 G C GPBP1L1 Silent p.R316R 0.09 TCGA-G4-6302-01 1 47685792 47685792 C T TAL1 Missense_Mutation p.R199Q 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6302-01 1 52874289 52874289 A G PRPF38A Silent p.A113A 0.08 TCGA-G4-6302-01 1 57425820 57425820 T A C8B Missense_Mutation p.N41I 0.13 deleterious(0.03) benign(0.025) TCGA-G4-6302-01 1 61543231 61543231 G - NFIA 5'Flank 0.11 TCGA-G4-6302-01 1 6184649 6184649 G A CHD5 Silent p.G1489G 0.12 TCGA-G4-6302-01 1 6190316 6190316 G A CHD5 Missense_Mutation p.A1112V 0.11 deleterious(0) probably_damaging(0.954) TCGA-G4-6302-01 1 62340948 62340948 T C INADL Missense_Mutation p.S957P 0.09 tolerated(0.05) benign(0.005) TCGA-G4-6302-01 1 62740668 62740668 G A KANK4 Silent p.D36D 0.08 TCGA-G4-6302-01 1 6640636 6640636 G - ZBTB48 5'UTR 0.11 TCGA-G4-6302-01 1 74665363 74665363 G A FPGT-TNNI3K Missense_Mutation p.R46H 0.12 deleterious_low_confidence(0.01) benign(0.001) TCGA-G4-6302-01 1 78958463 78958463 C A PTGFR Missense_Mutation p.P12H 0.12 tolerated(0.11) benign(0.235) TCGA-G4-6302-01 1 79107476 79107476 G A IFI44L Silent p.A447A 0.10 TCGA-G4-6302-01 1 85537654 85537654 A G WDR63 Silent p.S10S 0.09 TCGA-G4-6302-01 1 94341947 94341947 G A DNTTIP2 Missense_Mutation p.A515V 0.11 tolerated(0.15) benign(0.091) TCGA-G4-6302-01 20 10277594 10277595 - A SNAP25 Frame_Shift_Ins p.A104Sfs*5 0.12 TCGA-G4-6302-01 20 16485123 16485123 T - KIF16B Frame_Shift_Del p.N357Tfs*24 0.08 TCGA-G4-6302-01 20 23065642 23065642 G T CD93 Nonsense_Mutation p.C396* 0.15 TCGA-G4-6302-01 20 2312759 2312759 G A TGM3 Missense_Mutation p.S482N 0.07 tolerated(0.08) benign(0.036) TCGA-G4-6302-01 20 2384417 2384417 G A TGM6 Silent p.A428A 0.08 TCGA-G4-6302-01 20 23967147 23967147 G A GGTLC1 Silent p.D34D 0.11 TCGA-G4-6302-01 20 2778616 2778616 C T CPXM1 Missense_Mutation p.A227T 0.13 tolerated(0.48) benign(0.244) TCGA-G4-6302-01 20 307601 307601 C G SOX12 3'UTR 0.09 TCGA-G4-6302-01 20 31022260 31022260 C A ASXL1 Missense_Mutation p.P582H 0.06 deleterious(0) possibly_damaging(0.905) TCGA-G4-6302-01 20 3129370 3129370 C T FASTKD5 Missense_Mutation p.R116Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 20 31606913 31606913 A G BPIFB2 Missense_Mutation p.I301V 0.07 deleterious(0.01) possibly_damaging(0.817) TCGA-G4-6302-01 20 32378899 32378899 C T ZNF341 Missense_Mutation p.A707V 0.14 tolerated(0.31) benign(0.046) TCGA-G4-6302-01 20 33334611 33334611 C A NCOA6 Missense_Mutation p.G972C 0.12 probably_damaging(0.987) TCGA-G4-6302-01 20 35127690 35127690 C T DLGAP4 Missense_Mutation p.P686S 0.10 tolerated(0.42) benign(0) TCGA-G4-6302-01 20 35438470 35438470 C T SOGA1 Missense_Mutation p.S833N 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-G4-6302-01 20 3678674 3678674 G A SIGLEC1 Silent p.P631P 0.12 TCGA-G4-6302-01 20 37126128 37126128 C T RALGAPB Silent p.N174N 0.11 TCGA-G4-6302-01 20 45170238 45170238 T C OCSTAMP Missense_Mutation p.Q459R 0.13 tolerated(0.19) benign(0.001) TCGA-G4-6302-01 20 47628614 47628614 G T ARFGEF2 Missense_Mutation p.R1304M 0.07 tolerated(0.07) benign(0.017) TCGA-G4-6302-01 20 47700691 47700691 T C CSE1L Silent p.N537N 0.10 TCGA-G4-6302-01 20 54970639 54970639 C T CSTF1 Missense_Mutation p.R11C 0.08 deleterious(0.02) benign(0.031) TCGA-G4-6302-01 20 55043766 55043766 G - RTFDC1 Frame_Shift_Del p.G6Efs*10 0.08 TCGA-G4-6302-01 20 56186869 56186869 C A ZBP1 Missense_Mutation p.R263L 0.10 deleterious(0.01) probably_damaging(0.982) TCGA-G4-6302-01 20 60886769 60886769 G A LAMA5 Missense_Mutation p.P3236L 0.14 possibly_damaging(0.905) TCGA-G4-6302-01 20 60971388 60971388 G A CABLES2 Silent p.Y170Y 0.10 TCGA-G4-6302-01 20 61299472 61299472 T A SLCO4A1 Missense_Mutation p.F583I 0.07 tolerated(0.17) benign(0.278) TCGA-G4-6302-01 20 61943277 61943277 C - COL20A1 Frame_Shift_Del p.P560Rfs*9 0.09 TCGA-G4-6302-01 20 62560785 62560785 C T DNAJC5 Silent p.Y76Y 0.09 TCGA-G4-6302-01 20 62571375 62571375 G A UCKL1 Missense_Mutation p.A534V 0.08 deleterious(0.01) benign(0.222) TCGA-G4-6302-01 20 62705634 62705634 G A RGS19 Missense_Mutation p.R109W 0.13 deleterious(0) probably_damaging(0.988) TCGA-G4-6302-01 20 870931 870931 G - ANGPT4 Frame_Shift_Del p.M131Cfs*2 0.12 TCGA-G4-6302-01 21 18919432 18919432 C T CXADR Missense_Mutation p.T44M 0.18 deleterious(0.02) benign(0.182) TCGA-G4-6302-01 21 28213485 28213485 C A ADAMTS1 Splice_Site p.X404_splice 0.10 TCGA-G4-6302-01 21 32554913 32554913 G A TIAM1 Silent p.D904D 0.08 TCGA-G4-6302-01 21 34897237 34897237 T A GART Silent p.V379V 0.11 TCGA-G4-6302-01 21 37571451 37571451 C A DOPEY2 Silent p.A74A 0.12 TCGA-G4-6302-01 21 41032836 41032836 G T B3GALT5 Missense_Mutation p.G117V 0.08 deleterious(0.03) benign(0.367) TCGA-G4-6302-01 21 41033918 41033918 C A B3GALT5 3'UTR 0.11 TCGA-G4-6302-01 21 41741033 41741033 A - DSCAM Frame_Shift_Del p.F216Lfs*44 0.14 TCGA-G4-6302-01 21 46086728 46086728 C T KRTAP12-2 Missense_Mutation p.V26M 0.10 tolerated(0.06) unknown(0) TCGA-G4-6302-01 21 47693317 47693317 C T MCM3AP Silent p.T727T 0.07 TCGA-G4-6302-01 22 18371851 18371851 T C MICAL3 Missense_Mutation p.M614V 0.12 benign(0.202) TCGA-G4-6302-01 22 18609249 18609249 G A TUBA8 Silent p.E168E 0.08 TCGA-G4-6302-01 22 20102932 20102932 G A TRMT2A Silent p.V249V 0.11 TCGA-G4-6302-01 22 20458131 20458131 C A RIMBP3 Missense_Mutation p.E1057D 0.06 deleterious(0.01) possibly_damaging(0.892) TCGA-G4-6302-01 22 20819690 20819690 G T KLHL22 Silent p.R189R 0.12 TCGA-G4-6302-01 22 21799865 21799865 G - HIC2 Frame_Shift_Del p.G229Afs*45 0.14 TCGA-G4-6302-01 22 21988445 21988446 - T CCDC116 Frame_Shift_Ins p.G71Wfs*9 0.11 TCGA-G4-6302-01 22 22735245 22735245 C A IGLV1-44 5'UTR 0.09 TCGA-G4-6302-01 22 22893276 22893276 A G PRAME Missense_Mutation p.L86P 0.10 deleterious(0) probably_damaging(0.997) TCGA-G4-6302-01 22 24177123 24177123 C A DERL3 Intron 0.11 TCGA-G4-6302-01 22 25024705 25024705 G A GGT1 Missense_Mutation p.A537T 0.13 tolerated(0.79) benign(0.002) TCGA-G4-6302-01 22 26086249 26086249 G A ADRBK2 Missense_Mutation p.V351I 0.07 deleterious(0) benign(0.378) TCGA-G4-6302-01 22 28394729 28394729 C T TTC28 Missense_Mutation p.A1640T 0.12 tolerated(0.14) benign(0.398) TCGA-G4-6302-01 22 28559490 28559490 G A TTC28 Missense_Mutation p.A344V 0.08 tolerated(0.61) possibly_damaging(0.685) TCGA-G4-6302-01 22 29446537 29446537 G - ZNRF3 Frame_Shift_Del p.G791Afs*14 0.11 TCGA-G4-6302-01 22 29449693 29449693 T A ZNRF3 3'UTR 0.10 TCGA-G4-6302-01 22 29735111 29735111 G A AP1B1 Silent p.T677T 0.16 TCGA-G4-6302-01 22 29837740 29837740 G A RFPL1 Missense_Mutation p.G195R 0.10 deleterious(0.04) probably_damaging(0.93) TCGA-G4-6302-01 22 30228236 30228236 G A ASCC2 Silent p.L27L 0.05 TCGA-G4-6302-01 22 31486808 31486808 C T SMTN Nonsense_Mutation p.R294* 0.11 TCGA-G4-6302-01 22 32134467 32134467 C - PRR14L Frame_Shift_Del p.G127Afs*6 0.08 TCGA-G4-6302-01 22 32754419 32754419 C T RFPL3 Missense_Mutation p.R121W 0.11 deleterious(0.04) benign(0.09) TCGA-G4-6302-01 22 37627415 37627415 G A RAC2 Missense_Mutation p.R102W 0.08 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-G4-6302-01 22 38201692 38201692 C T H1F0 Silent p.R47R 0.11 TCGA-G4-6302-01 22 38328896 38328896 G A MICALL1 Splice_Site p.X745_splice 0.08 TCGA-G4-6302-01 22 39887824 39887824 C A MGAT3 3'UTR 0.09 TCGA-G4-6302-01 22 41257457 41257457 A G DNAJB7 Missense_Mutation p.M181T 0.09 tolerated(0.21) benign(0.014) TCGA-G4-6302-01 22 41257936 41257936 T - DNAJB7 Frame_Shift_Del p.A22Lfs*28 0.08 TCGA-G4-6302-01 22 41573676 41573676 A G EP300 Silent p.T1987T 0.08 TCGA-G4-6302-01 22 41753371 41753371 G T ZC3H7B Missense_Mutation p.D958Y 0.12 tolerated_low_confidence(0.07) benign(0.086) TCGA-G4-6302-01 22 42053024 42053024 G A XRCC6 Missense_Mutation p.R470H 0.11 tolerated(0.06) benign(0.029) TCGA-G4-6302-01 22 43460282 43460282 A G TTLL1 Silent p.I184I 0.08 TCGA-G4-6302-01 22 46611214 46611214 C T PPARA Missense_Mutation p.A118V 0.10 tolerated(0.05) probably_damaging(1) TCGA-G4-6302-01 22 46932070 46932070 C T CELSR1 Missense_Mutation p.R333H 0.14 deleterious(0.02) probably_damaging(1) TCGA-G4-6302-01 22 50832380 50832380 A G PPP6R2 Missense_Mutation p.K15E 0.09 deleterious(0.01) benign(0.236) TCGA-G4-6302-01 22 50943366 50943366 G A LMF2 Silent p.T434T 0.10 TCGA-G4-6302-01 22 50989612 50989612 C T SYCE3 3'UTR 0.07 TCGA-G4-6302-01 22 51045410 51045410 G A MAPK8IP2 Missense_Mutation p.R764H 0.09 deleterious(0) probably_damaging(0.977) TCGA-G4-6302-01 2 107460175 107460175 C T ST6GAL2 Missense_Mutation p.G87S 0.12 benign(0.002) TCGA-G4-6302-01 2 111427045 111427045 G A BUB1 Silent p.C184C 0.10 TCGA-G4-6302-01 2 113067707 113067707 A - ZC3H6 Frame_Shift_Del p.K196Nfs*4 0.08 TCGA-G4-6302-01 2 114257064 114257064 C T FOXD4L1 Silent p.G77G 0.09 TCGA-G4-6302-01 2 11911773 11911773 G A LPIN1 Silent p.S237S 0.10 TCGA-G4-6302-01 2 119699935 119699935 C A MARCO Missense_Mutation p.A20D 0.11 tolerated(0.08) benign(0.387) TCGA-G4-6302-01 2 128460601 128460602 - T WDR33 3'UTR 0.12 TCGA-G4-6302-01 2 128522386 128522386 T C WDR33 Intron 0.05 TCGA-G4-6302-01 2 135185993 135185993 G A MGAT5 Missense_Mutation p.A618T 0.11 deleterious(0.01) benign(0.156) TCGA-G4-6302-01 2 135711769 135711769 A G CCNT2 Missense_Mutation p.S582G 0.11 tolerated(0.31) benign(0) TCGA-G4-6302-01 2 138400119 138400119 C T THSD7B Silent p.P1290P 0.13 TCGA-G4-6302-01 2 1459959 1459959 G A TPO Missense_Mutation p.A242T 0.07 tolerated(0.31) benign(0.408) TCGA-G4-6302-01 2 149260034 149260034 A G MBD5 Silent p.T1431T 0.08 TCGA-G4-6302-01 2 152370867 152370867 G T NEB Missense_Mutation p.L7698I 0.12 benign(0.051) TCGA-G4-6302-01 2 1544451 1544451 G A TPO Missense_Mutation p.V902I 0.10 tolerated_low_confidence(0.4) benign(0.006) TCGA-G4-6302-01 2 159488430 159488430 C T PKP4 Missense_Mutation p.T440M 0.09 deleterious(0.01) possibly_damaging(0.587) TCGA-G4-6302-01 2 160706907 160706907 G A LY75-CD302 Silent p.G985G 0.08 TCGA-G4-6302-01 2 167085266 167085266 G A SCN9A Nonsense_Mutation p.R1370* 0.08 TCGA-G4-6302-01 2 167760127 167760127 G A XIRP2 Silent p.A45A 0.14 TCGA-G4-6302-01 2 170510725 170510725 C A CCDC173 Splice_Site p.X274_splice 0.11 TCGA-G4-6302-01 2 171092545 171092545 C T MYO3B Silent p.R216R 0.11 TCGA-G4-6302-01 2 172952994 172952994 G A DLX1 3'UTR 0.13 TCGA-G4-6302-01 2 178402805 178402805 G A AGPS Missense_Mutation p.G620D 0.12 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 2 179427993 179427993 T C TTN Silent p.P27622P 0.07 TCGA-G4-6302-01 2 179433013 179433013 G A TTN Missense_Mutation p.T25949I 0.10 TCGA-G4-6302-01 2 179455521 179455521 G A TTN Nonsense_Mutation p.R20311* 0.10 TCGA-G4-6302-01 2 179468762 179468762 G A TTN Nonsense_Mutation p.R18218* 0.07 TCGA-G4-6302-01 2 179532181 179532181 G A TTN Missense_Mutation p.P11901S 0.14 TCGA-G4-6302-01 2 179597068 179597068 G T TTN Missense_Mutation p.A5543D 0.10 TCGA-G4-6302-01 2 181927573 181927573 C T UBE2E3 Silent p.H194H 0.11 TCGA-G4-6302-01 2 181927740 181927740 C A UBE2E3 3'UTR 0.12 TCGA-G4-6302-01 2 189917739 189917739 A G COL5A2 Silent p.P853P 0.10 TCGA-G4-6302-01 2 190554382 190554382 T C ANKAR Missense_Mutation p.M244T 0.09 tolerated(0.32) benign(0.003) TCGA-G4-6302-01 2 197559793 197559793 T C CCDC150 Silent p.H511H 0.07 TCGA-G4-6302-01 2 203644337 203644337 C - ICA1L Frame_Shift_Del p.W456Cfs*29 0.11 TCGA-G4-6302-01 2 204000489 204000489 A - NBEAL1 Frame_Shift_Del p.A1274Qfs*17 0.10 TCGA-G4-6302-01 2 204820490 204820490 G A ICOS Missense_Mutation p.D64N 0.06 tolerated(0.11) benign(0.006) TCGA-G4-6302-01 2 207557952 207557952 C T DYTN Silent p.Q309Q 0.10 TCGA-G4-6302-01 2 21229237 21229237 C A APOB Missense_Mutation p.K3501N 0.12 possibly_damaging(0.821) TCGA-G4-6302-01 2 21233062 21233062 G T APOB Silent p.I2226I 0.08 TCGA-G4-6302-01 2 21235389 21235389 C A APOB Missense_Mutation p.G1451C 0.08 probably_damaging(0.945) TCGA-G4-6302-01 2 212530120 212530121 - C ERBB4 Frame_Shift_Ins p.A600Gfs*10 0.10 TCGA-G4-6302-01 2 218696257 218696258 - G TNS1 Frame_Shift_Ins p.L975Sfs*37 0.11 TCGA-G4-6302-01 2 219130855 219130855 A G AAMP Missense_Mutation p.V232A 0.10 tolerated(0.1) benign(0.268) TCGA-G4-6302-01 2 219492885 219492885 C A PLCD4 Nonsense_Mutation p.C302* 0.10 TCGA-G4-6302-01 2 219612327 219612327 C T TTLL4 Missense_Mutation p.H753Y 0.08 deleterious(0) possibly_damaging(0.573) TCGA-G4-6302-01 2 220111441 220111441 G A STK16 Missense_Mutation p.R50Q 0.16 deleterious(0.03) probably_damaging(0.986) TCGA-G4-6302-01 2 220419365 220419365 G A OBSL1 Silent p.T1569T 0.10 TCGA-G4-6302-01 2 220431778 220431778 G A OBSL1 Silent p.S636S 0.12 TCGA-G4-6302-01 2 220432909 220432909 G A OBSL1 Missense_Mutation p.R384C 0.09 deleterious(0) possibly_damaging(0.766) TCGA-G4-6302-01 2 220502893 220502893 G A SLC4A3 Missense_Mutation p.R952H 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 2 223066737 223066737 C T PAX3 Missense_Mutation p.C449Y 0.10 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-G4-6302-01 2 223799278 223799278 G A ACSL3 Silent p.V626V 0.10 TCGA-G4-6302-01 2 225740908 225740908 A T DOCK10 Missense_Mutation p.L260M 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 2 228104880 228104880 C - COL4A3 Frame_Shift_Del p.G58Vfs*35 0.09 TCGA-G4-6302-01 2 228564043 228564043 C T SLC19A3 Missense_Mutation p.V130M 0.11 tolerated(0.15) benign(0.297) TCGA-G4-6302-01 2 230679016 230679016 A G TRIP12 Missense_Mutation p.V538A 0.11 deleterious(0) probably_damaging(0.983) TCGA-G4-6302-01 2 234601668 234601668 C T UGT1A6 Silent p.R6R 0.06 TCGA-G4-6302-01 2 238234221 238234221 C T COL6A3 Missense_Mutation p.E3159K 0.11 unknown(0) TCGA-G4-6302-01 2 240158313 240158313 G A HDAC4 Missense_Mutation p.R24C 0.12 deleterious_low_confidence(0.02) benign(0.416) TCGA-G4-6302-01 2 242135143 242135143 G T ANO7 Missense_Mutation p.E118D 0.07 tolerated(0.14) benign(0.11) TCGA-G4-6302-01 2 24443852 24443852 C T ITSN2 Missense_Mutation p.E1221K 0.12 deleterious(0) unknown(0) TCGA-G4-6302-01 2 25044487 25044487 C T ADCY3 Missense_Mutation p.R1009H 0.09 deleterious(0.04) possibly_damaging(0.479) TCGA-G4-6302-01 2 27360924 27360924 G A C2orf53 Missense_Mutation p.P92S 0.09 tolerated(0.13) possibly_damaging(0.457) TCGA-G4-6302-01 2 27500695 27500695 G T DNAJC5G Missense_Mutation p.D63Y 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 2 37129726 37129726 C T STRN Splice_Site p.X220_splice 0.11 TCGA-G4-6302-01 2 37494627 37494627 C T PRKD3 Missense_Mutation p.M610I 0.08 deleterious(0.03) benign(0.086) TCGA-G4-6302-01 2 38178734 38178734 C T RMDN2 Missense_Mutation p.R126C 0.10 tolerated_low_confidence(0.17) possibly_damaging(0.496) TCGA-G4-6302-01 2 39025544 39025544 T C DHX57 Missense_Mutation p.Q1353R 0.11 tolerated(0.07) benign(0.275) TCGA-G4-6302-01 2 39934244 39934244 C T TMEM178A Silent p.C190C 0.11 TCGA-G4-6302-01 2 40401971 40401971 T C SLC8A1 Missense_Mutation p.I650V 0.11 tolerated(0.6) benign(0.002) TCGA-G4-6302-01 2 5835193 5835193 G T SOX11 3'UTR 0.09 TCGA-G4-6302-01 2 58386554 58386554 A - VRK2 Frame_Shift_Del p.I420Sfs*45 0.09 TCGA-G4-6302-01 2 60687942 60687942 G A BCL11A Missense_Mutation p.P702L 0.13 deleterious(0) benign(0.247) TCGA-G4-6302-01 2 63832501 63832501 A G MDH1 Missense_Mutation p.R273G 0.08 deleterious(0) possibly_damaging(0.636) TCGA-G4-6302-01 2 69009412 69009412 C A ARHGAP25 Missense_Mutation p.N103K 0.09 deleterious(0.01) possibly_damaging(0.746) TCGA-G4-6302-01 2 71302694 71302694 C T NAGK Missense_Mutation p.R243W 0.06 deleterious(0) probably_damaging(0.992) TCGA-G4-6302-01 2 72362468 72362468 G A CYP26B1 Silent p.R170R 0.10 TCGA-G4-6302-01 2 73487878 73487878 C A FBXO41 Silent p.L760L 0.05 TCGA-G4-6302-01 2 74007024 74007026 CTT - DUSP11 In_Frame_Del p.K73del 0.12 TCGA-G4-6302-01 2 77748820 77748820 C T LRRTM4 5'UTR 0.10 TCGA-G4-6302-01 2 84960571 84960571 C T DNAH6 Missense_Mutation p.R3404C 0.06 tolerated(0.14) possibly_damaging(0.892) TCGA-G4-6302-01 2 88892856 88892856 T C EIF2AK3 Missense_Mutation p.D234G 0.08 deleterious(0.01) benign(0.32) TCGA-G4-6302-01 2 99944045 99944045 C A TXNDC9 Missense_Mutation p.K87N 0.07 deleterious(0.03) possibly_damaging(0.904) TCGA-G4-6302-01 3 101136465 101136465 G T SENP7 Missense_Mutation p.L152I 0.06 tolerated(0.18) possibly_damaging(0.886) TCGA-G4-6302-01 3 101311488 101311488 C T PCNP Missense_Mutation p.A143V 0.09 deleterious(0) probably_damaging(0.988) TCGA-G4-6302-01 3 10436246 10436246 G A ATP2B2 Intron 0.08 TCGA-G4-6302-01 3 108303933 108303933 T A KIAA1524 Missense_Mutation p.I77F 0.10 tolerated(0.16) benign(0.009) TCGA-G4-6302-01 3 111988824 111988824 A - SLC9C1 Frame_Shift_Del p.F238Lfs*8 0.09 TCGA-G4-6302-01 3 119276504 119276504 C A CD80 Silent p.V24V 0.14 TCGA-G4-6302-01 3 121187234 121187234 C T POLQ Missense_Mutation p.D2255N 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 3 122133572 122133572 C A WDR5B Missense_Mutation p.K268N 0.10 deleterious(0) benign(0.202) TCGA-G4-6302-01 3 127395173 127395173 C T ABTB1 Missense_Mutation p.R127W 0.11 tolerated(0.07) benign(0.005) TCGA-G4-6302-01 3 128181954 128181956 CTT - DNAJB8 In_Frame_Del p.K45del 0.08 TCGA-G4-6302-01 3 132229954 132229954 C T DNAJC13 Missense_Mutation p.S1720L 0.12 tolerated(0.09) benign(0.023) TCGA-G4-6302-01 3 132361600 132361600 A G ACAD11 Missense_Mutation p.F99S 0.09 deleterious(0.01) probably_damaging(0.958) TCGA-G4-6302-01 3 133099409 133099410 - G TMEM108 Frame_Shift_Ins p.G288Wfs*37 0.12 TCGA-G4-6302-01 3 140277651 140277651 G T CLSTN2 Missense_Mutation p.V665L 0.15 tolerated(0.08) benign(0.008) TCGA-G4-6302-01 3 141164110 141164110 C T ZBTB38 Silent p.C960C 0.09 TCGA-G4-6302-01 3 145788524 145788524 C T PLOD2 Missense_Mutation p.V753M 0.09 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 3 152885983 152885983 T G RAP2B 3'UTR 0.13 TCGA-G4-6302-01 3 154001025 154001025 G A DHX36 Silent p.Y776Y 0.10 TCGA-G4-6302-01 3 154010469 154010469 T C DHX36 Missense_Mutation p.D562G 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 3 155655439 155655439 T C GMPS Silent p.Y680Y 0.11 TCGA-G4-6302-01 3 157823834 157823834 G A SHOX2 5'UTR 0.13 TCGA-G4-6302-01 3 16237383 16237383 C A GALNT15 Missense_Mutation p.P219H 0.07 deleterious(0) probably_damaging(0.983) TCGA-G4-6302-01 3 164712097 164712097 T A SI Missense_Mutation p.M1597L 0.06 tolerated(0.1) benign(0.142) TCGA-G4-6302-01 3 164737505 164737505 G A SI Missense_Mutation p.S1103L 0.08 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 3 169557805 169557805 T - LRRC31 Frame_Shift_Del p.R542Efs*37 0.11 TCGA-G4-6302-01 3 170732397 170732398 - T SLC2A2 Frame_Shift_Ins p.P78Tfs*6 0.09 TCGA-G4-6302-01 3 170781745 170781745 A - TNIK Frame_Shift_Del p.F1336Lfs*15 0.13 TCGA-G4-6302-01 3 178560622 178560622 G A KCNMB2 Nonsense_Mutation p.W202* 0.12 TCGA-G4-6302-01 3 179426658 179426658 G - USP13 Frame_Shift_Del p.G241Afs*16 0.08 TCGA-G4-6302-01 3 180332568 180332568 T - CCDC39 3'UTR 0.27 TCGA-G4-6302-01 3 182988627 182988627 T - B3GNT5 Frame_Shift_Del p.F349Lfs*8 0.11 TCGA-G4-6302-01 3 183245672 183245672 C G KLHL6 Missense_Mutation p.Q140H 0.11 deleterious(0.03) benign(0.002) TCGA-G4-6302-01 3 183396922 183396922 G A KLHL24 Missense_Mutation p.G551R 0.07 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 3 186947598 186947598 G A MASP1 3'Flank 0.11 TCGA-G4-6302-01 3 33729828 33729828 T C CLASP2 Silent p.K137K 0.09 TCGA-G4-6302-01 3 36587749 36587749 C A STAC Missense_Mutation p.L393I 0.11 deleterious(0.01) benign(0.249) TCGA-G4-6302-01 3 36869794 36869794 C T TRANK1 Missense_Mutation p.R2917Q 0.12 tolerated_low_confidence(0.1) benign(0.037) TCGA-G4-6302-01 3 36875403 36875403 C A TRANK1 Nonsense_Mutation p.E1847* 0.10 TCGA-G4-6302-01 3 37555304 37555304 C T ITGA9 Silent p.D316D 0.10 TCGA-G4-6302-01 3 38156512 38156512 G A DLEC1 Missense_Mutation p.R1275Q 0.11 deleterious(0) probably_damaging(0.977) TCGA-G4-6302-01 3 38739731 38739731 C T SCN10A Silent p.S1660S 0.12 TCGA-G4-6302-01 3 39180220 39180220 G A TTC21A Missense_Mutation p.D1302N 0.09 tolerated(1) benign(0) TCGA-G4-6302-01 3 43121535 43121535 G A POMGNT2 Silent p.R463R 0.11 TCGA-G4-6302-01 3 43122746 43122746 G T POMGNT2 Missense_Mutation p.L60M 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6302-01 3 432680 432680 C T CHL1 Missense_Mutation p.H877Y 0.07 tolerated(1) benign(0.007) TCGA-G4-6302-01 3 44351319 44351319 A G TOPAZ1 Silent p.G1381G 0.08 TCGA-G4-6302-01 3 44488107 44488107 G A ZNF445 Missense_Mutation p.S1019L 0.11 deleterious(0) benign(0.32) TCGA-G4-6302-01 3 45134975 45134975 T G CDCP1 Missense_Mutation p.K474T 0.09 deleterious(0.04) benign(0.016) TCGA-G4-6302-01 3 45965165 45965165 G A FYCO1 Silent p.F1448F 0.08 TCGA-G4-6302-01 3 46944108 46944108 C T PTH1R Missense_Mutation p.T435M 0.14 deleterious(0.04) benign(0.163) TCGA-G4-6302-01 3 47454411 47454411 C T PTPN23 Silent p.S1549S 0.13 TCGA-G4-6302-01 3 48606224 48606224 C A COL7A1 Missense_Mutation p.G2584V 0.08 probably_damaging(0.998) TCGA-G4-6302-01 3 49017930 49017930 G A ARIH2 Splice_Site p.X419_splice 0.11 TCGA-G4-6302-01 3 49049079 49049079 G A WDR6 Missense_Mutation p.D68N 0.10 tolerated(0.44) benign(0.005) TCGA-G4-6302-01 3 49698339 49698339 C T BSN Missense_Mutation p.R3021W 0.12 unknown(0) TCGA-G4-6302-01 3 49713566 49713566 G A APEH Missense_Mutation p.E174K 0.11 tolerated(0.18) benign(0.04) TCGA-G4-6302-01 3 49724802 49724802 A T MST1 Missense_Mutation p.D155E 0.05 tolerated(0.6) probably_damaging(0.911) TCGA-G4-6302-01 3 49753345 49753345 C A RNF123 Missense_Mutation p.L1081M 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 3 49756518 49756518 G A AMIGO3 Silent p.H127H 0.12 TCGA-G4-6302-01 3 52422865 52422865 C T DNAH1 Missense_Mutation p.T3136M 0.12 possibly_damaging(0.625) TCGA-G4-6302-01 3 52469834 52469834 G A SEMA3G Nonsense_Mutation p.Q712* 0.08 TCGA-G4-6302-01 3 52745731 52745731 T - NEK4 3'UTR 0.10 TCGA-G4-6302-01 3 52859927 52859927 C T ITIH4 Missense_Mutation p.R245Q 0.09 tolerated(0.08) possibly_damaging(0.621) TCGA-G4-6302-01 3 52863161 52863161 C A ITIH4 Missense_Mutation p.K75N 0.08 deleterious(0) possibly_damaging(0.906) TCGA-G4-6302-01 3 57469110 57469110 C A DNAH12 Missense_Mutation p.R548M 0.09 deleterious(0.04) possibly_damaging(0.507) TCGA-G4-6302-01 3 71247411 71247411 G A FOXP1 Missense_Mutation p.T41M 0.10 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-G4-6302-01 3 73433782 73433782 G T PDZRN3 Silent p.R645R 0.11 TCGA-G4-6302-01 3 74313501 74313501 T - CNTN3 3'UTR 0.12 TCGA-G4-6302-01 3 78649305 78649305 A G ROBO1 Silent p.L1633L 0.11 TCGA-G4-6302-01 3 89499363 89499363 C - EPHA3 Frame_Shift_Del p.M847Wfs*10 0.10 TCGA-G4-6302-01 3 9032252 9032252 T C SRGAP3 Missense_Mutation p.T944A 0.04 tolerated(0.25) benign(0.007) TCGA-G4-6302-01 3 96706578 96706579 - G EPHA6 Frame_Shift_Ins p.A287Gfs*21 0.09 TCGA-G4-6302-01 3 99514266 99514266 C - COL8A1 Frame_Shift_Del p.I509Lfs*24 0.10 TCGA-G4-6302-01 4 106159927 106159927 C - TET2 Intron 0.09 TCGA-G4-6302-01 4 110415855 110415855 C T SEC24B Missense_Mutation p.A444V 0.07 tolerated(0.13) benign(0.002) TCGA-G4-6302-01 4 114199641 114199641 C T ANK2 Missense_Mutation p.A603V 0.07 probably_damaging(0.999) TCGA-G4-6302-01 4 114378618 114378618 G A CAMK2D Nonsense_Mutation p.Q436* 0.10 TCGA-G4-6302-01 4 114899860 114899860 A G ARSJ Missense_Mutation p.L44P 0.11 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-G4-6302-01 4 126238465 126238465 C A FAT4 Missense_Mutation p.P300H 0.14 probably_damaging(1) TCGA-G4-6302-01 4 128806953 128806953 T C PLK4 Missense_Mutation p.L143P 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 4 134071598 134071598 C G PCDH10 Missense_Mutation p.N101K 0.07 deleterious(0.03) possibly_damaging(0.814) TCGA-G4-6302-01 4 134073591 134073591 G A PCDH10 Missense_Mutation p.G766R 0.14 tolerated(0.64) probably_damaging(0.98) TCGA-G4-6302-01 4 135121150 135121150 G T PABPC4L Missense_Mutation p.P400H 0.09 deleterious(0.02) benign(0.004) TCGA-G4-6302-01 4 141600097 141600097 G A TBC1D9 Missense_Mutation p.R284C 0.05 deleterious(0) possibly_damaging(0.84) TCGA-G4-6302-01 4 146435834 146435834 C T SMAD1 Silent p.G23G 0.11 TCGA-G4-6302-01 4 153247196 153247196 T G FBXW7 Missense_Mutation p.T536P 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6302-01 4 153897316 153897316 C T FHDC1 Missense_Mutation p.P958L 0.08 tolerated(0.23) benign(0.004) TCGA-G4-6302-01 4 155507372 155507372 C T FGA Silent p.A403A 0.10 TCGA-G4-6302-01 4 166405608 166405608 C T CPE Silent p.D275D 0.11 TCGA-G4-6302-01 4 169176898 169176898 C T DDX60 Missense_Mutation p.R1174Q 0.04 tolerated(0.1) benign(0.016) TCGA-G4-6302-01 4 170057543 170057543 T C SH3RF1 Missense_Mutation p.I332V 0.09 deleterious(0.03) probably_damaging(0.959) TCGA-G4-6302-01 4 1720191 1720191 G - TMEM129 Frame_Shift_Del p.P123Hfs*42 0.10 TCGA-G4-6302-01 4 175184058 175184058 C T FBXO8 Silent p.S62S 0.04 TCGA-G4-6302-01 4 177052768 177052768 C A WDR17 Missense_Mutation p.P350Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 4 185689491 185689491 C T ACSL1 Silent p.L369L 0.08 TCGA-G4-6302-01 4 186997885 186997885 A G TLR3 Missense_Mutation p.S38G 0.12 deleterious(0) probably_damaging(0.934) TCGA-G4-6302-01 4 187455650 187455650 C T MTNR1A Silent p.P82P 0.10 TCGA-G4-6302-01 4 2240498 2240498 T G HAUS3 Missense_Mutation p.E394D 0.09 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 4 24878173 24878175 CTT - CCDC149 In_Frame_Del p.K70del 0.16 TCGA-G4-6302-01 4 25823643 25823643 C T SEL1L3 Missense_Mutation p.R422H 0.11 deleterious(0) probably_damaging(0.97) TCGA-G4-6302-01 4 2826367 2826367 G A SH3BP2 Silent p.T146T 0.15 TCGA-G4-6302-01 4 36149232 36149232 A C ARAP2 Missense_Mutation p.F1046C 0.11 deleterious(0) probably_damaging(0.94) TCGA-G4-6302-01 4 41621389 41621390 AG - LIMCH1 Frame_Shift_Del p.E292Gfs*29 0.10 TCGA-G4-6302-01 4 41984018 41984018 C T DCAF4L1 Missense_Mutation p.A70V 0.10 tolerated(0.25) benign(0.006) TCGA-G4-6302-01 4 437947 437947 A G ZNF721 Silent p.H103H 0.08 TCGA-G4-6302-01 4 48487022 48487022 G A SLC10A4 Missense_Mutation p.A222T 0.08 deleterious(0.01) benign(0.383) TCGA-G4-6302-01 4 4864680 4864680 C A MSX1 Missense_Mutation p.A241D 0.09 deleterious(0) probably_damaging(0.997) TCGA-G4-6302-01 4 49034734 49034734 T C CWH43 Splice_Site p.X553_splice 0.10 TCGA-G4-6302-01 4 54967966 54967966 G A GSX2 Silent p.T264T 0.11 TCGA-G4-6302-01 4 55129918 55129918 G A PDGFRA Missense_Mutation p.R151H 0.07 deleterious(0.04) benign(0.028) TCGA-G4-6302-01 4 5586432 5586432 T C EVC2 Missense_Mutation p.Q992R 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-G4-6302-01 4 5830329 5830329 C A CRMP1 Missense_Mutation p.G564C 0.07 deleterious(0) probably_damaging(0.995) TCGA-G4-6302-01 4 5969153 5969153 C T C4orf50 Missense_Mutation p.A623T 0.08 tolerated(0.18) benign(0.255) TCGA-G4-6302-01 4 66270109 66270109 G A EPHA5 Silent p.G591G 0.06 TCGA-G4-6302-01 4 69096989 69096989 G A TMPRSS11B Silent p.G206G 0.11 TCGA-G4-6302-01 4 70505242 70505242 A G UGT2A2 Silent p.G39G 0.12 TCGA-G4-6302-01 4 74005429 74005429 G T ANKRD17 Silent p.P968P 0.11 TCGA-G4-6302-01 4 74012523 74012523 A G ANKRD17 Silent p.H609H 0.09 TCGA-G4-6302-01 4 74441817 74441817 T - RASSF6 3'UTR 0.13 TCGA-G4-6302-01 4 77069508 77069508 G A NUP54 Missense_Mutation p.A7V 0.07 tolerated(0.08) unknown(0) TCGA-G4-6302-01 4 77253635 77253635 C T CCDC158 Silent p.R940R 0.09 TCGA-G4-6302-01 4 77661609 77661609 C T SHROOM3 Silent p.P761P 0.12 TCGA-G4-6302-01 4 77700213 77700213 A C SHROOM3 Silent p.S1958S 0.12 TCGA-G4-6302-01 4 83827642 83827642 G A THAP9 Missense_Mutation p.V148M 0.10 tolerated(0.32) benign(0.004) TCGA-G4-6302-01 4 85731291 85731291 A G WDFY3 Silent p.Y698Y 0.13 TCGA-G4-6302-01 4 88238346 88238346 G A HSD17B13 Silent p.I116I 0.09 TCGA-G4-6302-01 4 88902933 88902933 C T SPP1 Missense_Mutation p.R175C 0.10 tolerated(0.08) probably_damaging(0.978) TCGA-G4-6302-01 4 96761550 96761550 A G PDHA2 Silent p.K83K 0.09 TCGA-G4-6302-01 4 9785349 9785349 G C DRD5 3'UTR 0.09 TCGA-G4-6302-01 5 101811465 101811465 C A SLCO6A1 Missense_Mutation p.A279S 0.06 tolerated(0.25) benign(0.047) TCGA-G4-6302-01 5 110730436 110730436 C T CAMK4 Nonsense_Mutation p.R139* 0.07 TCGA-G4-6302-01 5 111066620 111066620 A - NREP Frame_Shift_Del p.*113N 0.09 TCGA-G4-6302-01 5 112257820 112257822 AGA - REEP5 In_Frame_Del p.L23del 0.23 TCGA-G4-6302-01 5 122435630 122435630 G A PRDM6 Missense_Mutation p.V292M 0.11 deleterious(0.02) possibly_damaging(0.616) TCGA-G4-6302-01 5 124080706 124080706 A - ZNF608 5'UTR 0.09 TCGA-G4-6302-01 5 131543430 131543430 C T P4HA2 Missense_Mutation p.E351K 0.11 tolerated(0.13) benign(0.064) TCGA-G4-6302-01 5 131811470 131811470 C T AC116366.6 5'Flank 0.11 TCGA-G4-6302-01 5 133295286 133295286 A G C5orf15 Missense_Mutation p.S189P 0.10 tolerated(0.37) benign(0.009) TCGA-G4-6302-01 5 135392470 135392470 G A TGFBI Missense_Mutation p.R555Q 0.08 deleterious(0.03) benign(0.229) TCGA-G4-6302-01 5 136975626 136975626 C T KLHL3 Missense_Mutation p.R315H 0.05 tolerated(0.15) possibly_damaging(0.888) TCGA-G4-6302-01 5 138209687 138209687 A G LRRTM2 Missense_Mutation p.L188S 0.10 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 5 140180965 140180965 G A PCDHA3 Silent p.P61P 0.10 TCGA-G4-6302-01 5 140203514 140203514 C T PCDHA5 Silent p.T718T 0.12 TCGA-G4-6302-01 5 140215858 140215858 G T PCDHA7 Missense_Mutation p.E630D 0.10 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-G4-6302-01 5 140249014 140249014 T A PCDHA11 Missense_Mutation p.I109N 0.13 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-G4-6302-01 5 140558807 140558807 G A PCDHB8 Missense_Mutation p.V398M 0.06 tolerated_low_confidence(0.06) benign(0.021) TCGA-G4-6302-01 5 140725147 140725147 C T PCDHGA3 Missense_Mutation p.A516V 0.07 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-G4-6302-01 5 140735384 140735384 C T PCDHGA4 Missense_Mutation p.A206V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-G4-6302-01 5 140740964 140740964 C G PCDHGB2 Missense_Mutation p.T421S 0.09 deleterious(0.04) possibly_damaging(0.764) TCGA-G4-6302-01 5 141384497 141384498 CT - GNPDA1 Frame_Shift_Del p.E198Gfs*42 0.12 TCGA-G4-6302-01 5 145883453 145883453 C T TCERG1 Nonsense_Mutation p.R872* 0.12 TCGA-G4-6302-01 5 146997590 146997590 G A JAKMIP2 Nonsense_Mutation p.Q744* 0.13 TCGA-G4-6302-01 5 160753376 160753376 G A GABRB2 Missense_Mutation p.T397M 0.09 tolerated(0.13) benign(0.339) TCGA-G4-6302-01 5 170814799 170814799 G A NPM1 5'UTR 0.09 TCGA-G4-6302-01 5 176517623 176517623 C T FGFR4 Silent p.I108I 0.10 TCGA-G4-6302-01 5 176951766 176951766 C - FAM193B Frame_Shift_Del p.P574Lfs*11 0.10 TCGA-G4-6302-01 5 177547584 177547584 C - N4BP3 Frame_Shift_Del p.Y248Tfs*50 0.12 TCGA-G4-6302-01 5 19591193 19591193 G A CDH18 Silent p.T324T 0.08 TCGA-G4-6302-01 5 22078585 22078585 G A CDH12 Silent p.Y67Y 0.07 TCGA-G4-6302-01 5 24487938 24487938 G A CDH10 Missense_Mutation p.A734V 0.10 tolerated(0.06) probably_damaging(0.983) TCGA-G4-6302-01 5 26906098 26906098 C T CDH9 Missense_Mutation p.V261I 0.08 tolerated(0.16) possibly_damaging(0.851) TCGA-G4-6302-01 5 31323022 31323022 C T CDH6 Silent p.N660N 0.08 TCGA-G4-6302-01 5 31995695 31995695 G A PDZD2 Missense_Mutation p.R331Q 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6302-01 5 32786434 32786434 C A NPR3 Missense_Mutation p.H537N 0.07 tolerated(1) benign(0.014) TCGA-G4-6302-01 5 33938004 33938004 G A RXFP3 Missense_Mutation p.V387I 0.13 tolerated(0.91) benign(0.004) TCGA-G4-6302-01 5 35700753 35700753 C T SPEF2 Missense_Mutation p.A766V 0.09 tolerated(0.15) benign(0) TCGA-G4-6302-01 5 35712920 35712920 C T SPEF2 Missense_Mutation p.P949L 0.06 tolerated(0.21) benign(0) TCGA-G4-6302-01 5 35954297 35954297 C T UGT3A1 3'UTR 0.11 TCGA-G4-6302-01 5 37000615 37000615 C T NIPBL Nonsense_Mutation p.R1149* 0.08 TCGA-G4-6302-01 5 37051882 37051882 G A NIPBL Missense_Mutation p.C2319Y 0.08 deleterious(0) probably_damaging(0.989) TCGA-G4-6302-01 5 37364372 37364372 G T NUP155 Missense_Mutation p.P91H 0.06 deleterious(0.02) benign(0.03) TCGA-G4-6302-01 5 43161979 43161979 G T ZNF131 Nonsense_Mutation p.E300* 0.06 TCGA-G4-6302-01 5 45396690 45396690 G A HCN1 Silent p.S378S 0.12 TCGA-G4-6302-01 5 53815143 53815143 G A SNX18 Missense_Mutation p.R454H 0.10 deleterious(0.01) benign(0.232) TCGA-G4-6302-01 5 54577310 54577310 A G DHX29 Missense_Mutation p.S667P 0.09 deleterious(0.01) possibly_damaging(0.88) TCGA-G4-6302-01 5 5464172 5464172 A G KIAA0947 Silent p.R1575R 0.11 TCGA-G4-6302-01 5 60839353 60839353 G A ZSWIM6 Missense_Mutation p.V953I 0.11 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 5 653122 653122 G A CEP72 Missense_Mutation p.E600K 0.09 tolerated(0.07) probably_damaging(0.998) TCGA-G4-6302-01 5 66461933 66461933 A G MAST4 Missense_Mutation p.H2309R 0.09 benign(0.005) TCGA-G4-6302-01 5 68524053 68524053 C T MRPS36 Silent p.L45L 0.10 TCGA-G4-6302-01 5 73930815 73930815 C - ENC1 Frame_Shift_Del p.G499Vfs*26 0.11 TCGA-G4-6302-01 5 75913339 75913339 A G F2RL2 3'UTR 0.11 TCGA-G4-6302-01 5 76358967 76358967 A - AGGF1 Frame_Shift_Del p.N681Tfs*29 0.10 TCGA-G4-6302-01 5 76728944 76728944 T - WDR41 3'UTR 0.08 TCGA-G4-6302-01 5 79025719 79025719 A G CMYA5 Silent p.E377E 0.07 TCGA-G4-6302-01 5 82937463 82937463 G A HAPLN1 Missense_Mutation p.A306V 0.13 deleterious(0) probably_damaging(0.979) TCGA-G4-6302-01 5 9227044 9227044 C T SEMA5A Silent p.V123V 0.09 TCGA-G4-6302-01 5 94050577 94050577 C T MCTP1 Silent p.K875K 0.10 TCGA-G4-6302-01 5 96118890 96118890 G A ERAP1 Missense_Mutation p.T717I 0.09 tolerated(0.05) benign(0.101) TCGA-G4-6302-01 6 102266354 102266354 T - GRIK2 Frame_Shift_Del p.L439Wfs*67 0.08 TCGA-G4-6302-01 6 105726209 105726209 T C PREP Missense_Mutation p.H648R 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 6 109885330 109885330 T C AK9 Missense_Mutation p.D863G 0.10 tolerated(0.81) benign(0.003) TCGA-G4-6302-01 6 112440484 112440484 G A LAMA4 Nonsense_Mutation p.R1566* 0.11 TCGA-G4-6302-01 6 116574704 116574704 T - TSPYL4 Frame_Shift_Del p.K156Nfs*23 0.10 TCGA-G4-6302-01 6 11779166 11779166 T C ADTRP 5'Flank 0.20 TCGA-G4-6302-01 6 123577012 123577012 C A TRDN Missense_Mutation p.V636F 0.06 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-G4-6302-01 6 123785973 123785973 A T TRDN Intron 0.15 TCGA-G4-6302-01 6 128302260 128302260 C T PTPRK Splice_Site p.X1243_splice 0.08 TCGA-G4-6302-01 6 129475727 129475727 C T LAMA2 Missense_Mutation p.R369C 0.07 tolerated(0.07) possibly_damaging(0.601) TCGA-G4-6302-01 6 131912516 131912516 G A MED23 Missense_Mutation p.T1208M 0.13 tolerated(0.38) benign(0.161) TCGA-G4-6302-01 6 132892247 132892247 A G TAAR6 Missense_Mutation p.T263A 0.09 tolerated(1) benign(0.029) TCGA-G4-6302-01 6 133055562 133055562 T C VNN3 Intron 0.11 TCGA-G4-6302-01 6 133073797 133073797 G A VNN2 Missense_Mutation p.T210M 0.06 deleterious(0) probably_damaging(0.986) TCGA-G4-6302-01 6 136904708 136904709 AA - MAP3K5 Frame_Shift_Del p.F1132Wfs*8 0.08 TCGA-G4-6302-01 6 138200453 138200453 G A TNFAIP3 Missense_Mutation p.C624Y 0.12 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 6 138201266 138201266 T A TNFAIP3 Silent p.I655I 0.12 TCGA-G4-6302-01 6 138612970 138612970 G A KIAA1244 Missense_Mutation p.A1050T 0.10 tolerated(0.43) benign(0.001) TCGA-G4-6302-01 6 138745611 138745611 C A NHSL1 Missense_Mutation p.Q1480H 0.10 deleterious(0.04) possibly_damaging(0.844) TCGA-G4-6302-01 6 138751559 138751560 - C NHSL1 Frame_Shift_Ins p.E1312Gfs*27 0.09 TCGA-G4-6302-01 6 142490740 142490740 T C VTA1 Silent p.C87C 0.16 TCGA-G4-6302-01 6 143074780 143074780 C - HIVEP2 Frame_Shift_Del p.E2269Sfs*37 0.08 TCGA-G4-6302-01 6 15246694 15246695 - T JARID2 5'UTR 0.13 TCGA-G4-6302-01 6 152646305 152646305 G A SYNE1 Missense_Mutation p.R5191C 0.08 probably_damaging(0.999) TCGA-G4-6302-01 6 152651609 152651609 T - SYNE1 Frame_Shift_Del p.E4738Kfs*25 0.11 TCGA-G4-6302-01 6 158873197 158873197 G C TULP4 Missense_Mutation p.Q252H 0.12 tolerated(0.3) benign(0.021) TCGA-G4-6302-01 6 158925000 158925000 C A TULP4 Silent p.S1435S 0.16 TCGA-G4-6302-01 6 160184020 160184021 - GA ACAT2 Frame_Shift_Ins p.K43Rfs*49 0.08 TCGA-G4-6302-01 6 160224319 160224319 C T PNLDC1 Silent p.S64S 0.11 TCGA-G4-6302-01 6 160453587 160453587 C T IGF2R Missense_Mutation p.T296I 0.15 deleterious(0) probably_damaging(0.949) TCGA-G4-6302-01 6 161015128 161015128 C A LPA Missense_Mutation p.G1164V 0.07 tolerated(0.23) probably_damaging(0.973) TCGA-G4-6302-01 6 170105213 170105213 T - C6orf120 3'UTR 0.08 TCGA-G4-6302-01 6 24146225 24146225 A C NRSN1 3'UTR 0.14 TCGA-G4-6302-01 6 27833460 27833460 C T HIST1H2AL Missense_Mutation p.P110S 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G4-6302-01 6 28212872 28212872 A G ZKSCAN4 3'UTR 0.11 TCGA-G4-6302-01 6 28329184 28329184 A T ZKSCAN3 Missense_Mutation p.Q162H 0.06 tolerated(0.16) benign(0.013) TCGA-G4-6302-01 6 29408399 29408399 G T OR10C1 Missense_Mutation p.A203S 0.11 deleterious(0.03) possibly_damaging(0.858) TCGA-G4-6302-01 6 30546343 30546343 C T ABCF1 Missense_Mutation p.R160W 0.11 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-G4-6302-01 6 30558385 30558385 G T ABCF1 Missense_Mutation p.Q815H 0.04 tolerated(0.14) possibly_damaging(0.737) TCGA-G4-6302-01 6 30916703 30916703 A - DPCR1 Frame_Shift_Del p.K156Nfs*3 0.09 TCGA-G4-6302-01 6 31323266 31323266 C T HLA-B Nonsense_Mutation p.W241* 0.05 TCGA-G4-6302-01 6 31378979 31378979 G A MICA Silent p.V152V 0.10 TCGA-G4-6302-01 6 31604841 31604841 C T PRRC2A Missense_Mutation p.P2057L 0.10 unknown(0) TCGA-G4-6302-01 6 31608009 31608009 G T BAG6 Silent p.A1041A 0.16 TCGA-G4-6302-01 6 31614195 31614195 A G BAG6 Silent p.A304A 0.08 TCGA-G4-6302-01 6 31778466 31778466 C A HSPA1L Missense_Mutation p.Q428H 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6302-01 6 31916705 31916705 C T CFB Missense_Mutation p.R881C 0.09 deleterious(0) possibly_damaging(0.887) TCGA-G4-6302-01 6 32086863 32086863 T C ATF6B Missense_Mutation p.Q341R 0.10 deleterious(0) probably_damaging(0.997) TCGA-G4-6302-01 6 32096893 32096893 C T FKBPL Missense_Mutation p.R222Q 0.06 tolerated(0.15) benign(0.319) TCGA-G4-6302-01 6 32183135 32183135 G A NOTCH4 Missense_Mutation p.A630V 0.08 deleterious(0.04) benign(0.004) TCGA-G4-6302-01 6 3224994 3224994 G A TUBB2B Silent p.D443D 0.08 TCGA-G4-6302-01 6 32827279 32827279 C T PSMB9 Silent p.G210G 0.07 TCGA-G4-6302-01 6 33157179 33157179 C T COL11A2 Silent p.A50A 0.07 TCGA-G4-6302-01 6 33638181 33638181 G A ITPR3 Missense_Mutation p.V757M 0.12 deleterious(0) possibly_damaging(0.741) TCGA-G4-6302-01 6 36262099 36262099 A G PNPLA1 Missense_Mutation p.M213V 0.12 tolerated(0.36) benign(0.031) TCGA-G4-6302-01 6 37612411 37612411 A C MDGA1 Missense_Mutation p.F755V 0.11 deleterious(0) probably_damaging(0.992) TCGA-G4-6302-01 6 38813482 38813482 G A DNAH8 Missense_Mutation p.E1443K 0.12 possibly_damaging(0.625) TCGA-G4-6302-01 6 41011726 41011726 A G TSPO2 Silent p.A121A 0.10 TCGA-G4-6302-01 6 42236420 42236420 C T TRERF1 Silent p.P303P 0.10 TCGA-G4-6302-01 6 43184211 43184212 CT - CUL9 Frame_Shift_Del p.C2087Lfs*7 0.12 TCGA-G4-6302-01 6 43403645 43403645 G T ABCC10 Missense_Mutation p.D589Y 0.13 deleterious(0.04) possibly_damaging(0.855) TCGA-G4-6302-01 6 44140983 44140983 G - CAPN11 Frame_Shift_Del p.G232Afs*56 0.09 TCGA-G4-6302-01 6 44240933 44240933 G A TMEM151B Missense_Mutation p.R89H 0.16 tolerated(0.07) benign(0.117) TCGA-G4-6302-01 6 46656653 46656653 A G TDRD6 Missense_Mutation p.H263R 0.13 deleterious(0.04) possibly_damaging(0.6) TCGA-G4-6302-01 6 46656968 46656968 G A TDRD6 Missense_Mutation p.R368Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 6 46977322 46977322 T - GPR110 Frame_Shift_Del p.S617Afs*12 0.11 TCGA-G4-6302-01 6 57012978 57012979 - A ZNF451 Frame_Shift_Ins p.T701Nfs*2 0.09 TCGA-G4-6302-01 6 57189077 57189077 T A PRIM2 Missense_Mutation p.S113T 0.07 tolerated(0.51) benign(0.254) TCGA-G4-6302-01 6 6175025 6175025 A G F13A1 Missense_Mutation p.V512A 0.05 tolerated(0.61) benign(0.003) TCGA-G4-6302-01 6 72003234 72003234 A G OGFRL1 Splice_Site p.X108_splice 0.13 TCGA-G4-6302-01 6 74115548 74115548 C T DDX43 Missense_Mutation p.T266I 0.10 deleterious(0) probably_damaging(0.99) TCGA-G4-6302-01 6 74354261 74354261 A G SLC17A5 Missense_Mutation p.Y54H 0.06 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 6 82891683 82891683 T - IBTK Frame_Shift_Del p.K1213Sfs*50 0.10 TCGA-G4-6302-01 6 87725612 87725612 C T HTR1E Missense_Mutation p.T187M 0.10 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 6 88318838 88318838 A - ORC3 Frame_Shift_Del p.R204Gfs*16 0.11 TCGA-G4-6302-01 6 90463941 90463941 G A MDN1 Missense_Mutation p.T942I 0.08 benign(0.005) TCGA-G4-6302-01 6 96659537 96659537 C A FUT9 3'UTR 0.14 TCGA-G4-6302-01 6 99848583 99848584 - T PNISR Frame_Shift_Ins p.H751Tfs*5 0.09 TCGA-G4-6302-01 7 100224431 100224433 CTC - TFR2 In_Frame_Del p.E697del 0.09 TCGA-G4-6302-01 7 100352898 100352898 G A ZAN Silent p.S1058S 0.07 TCGA-G4-6302-01 7 101256940 101256941 - CCT MYL10 Splice_Site p.X194_splice 0.10 TCGA-G4-6302-01 7 103180785 103180787 CTC - RELN In_Frame_Del p.E2263del 0.09 TCGA-G4-6302-01 7 105516960 105516960 A G ATXN7L1 Silent p.A15A 0.10 TCGA-G4-6302-01 7 106797681 106797681 G T PRKAR2B Silent p.S345S 0.08 TCGA-G4-6302-01 7 107557839 107557839 C T DLD Missense_Mutation p.P390S 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 7 11521506 11521506 C T THSD7A Silent p.T642T 0.09 TCGA-G4-6302-01 7 116340178 116340178 C T MET Missense_Mutation p.A347V 0.09 deleterious(0.02) possibly_damaging(0.794) TCGA-G4-6302-01 7 117243797 117243797 C T CFTR Missense_Mutation p.L957F 0.11 tolerated(0.18) possibly_damaging(0.643) TCGA-G4-6302-01 7 117251722 117251722 C A CFTR Missense_Mutation p.T1076N 0.09 tolerated(0.12) benign(0.014) TCGA-G4-6302-01 7 124499156 124499156 C T POT1 Missense_Mutation p.G186D 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 7 126173527 126173527 A T GRM8 Missense_Mutation p.F637I 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6302-01 7 126698185 126698185 C T GRM8 Intron 0.09 TCGA-G4-6302-01 7 138555927 138555927 C T KIAA1549 Silent p.A1509A 0.15 TCGA-G4-6302-01 7 140221842 140221842 C T DENND2A Silent p.V908V 0.11 TCGA-G4-6302-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.11 deleterious(0) probably_damaging(0.967) TCGA-G4-6302-01 7 141364022 141364022 G T KIAA1147 Silent p.S374S 0.07 TCGA-G4-6302-01 7 141673359 141673359 A G TAS2R38 Missense_Mutation p.V44A 0.13 tolerated(0.08) benign(0.223) TCGA-G4-6302-01 7 143632820 143632820 G A OR2F2 Silent p.Q165Q 0.12 TCGA-G4-6302-01 7 150417463 150417463 T C GIMAP1 Missense_Mutation p.F124S 0.14 deleterious(0) probably_damaging(0.974) TCGA-G4-6302-01 7 150704284 150704284 C T NOS3 Missense_Mutation p.R678W 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 7 150714271 150714271 G A ATG9B Missense_Mutation p.A714V 0.09 tolerated(0.31) benign(0.037) TCGA-G4-6302-01 7 151073782 151073782 C T NUB1 Silent p.N542N 0.11 TCGA-G4-6302-01 7 15425073 15425073 C T AGMO Missense_Mutation p.A358T 0.11 tolerated(0.55) benign(0.006) TCGA-G4-6302-01 7 1785885 1785885 G A ELFN1 Silent p.S551S 0.09 TCGA-G4-6302-01 7 20198076 20198078 AAG - MACC1 In_Frame_Del p.L636del 0.11 TCGA-G4-6302-01 7 23286464 23286464 G A GPNMB 5'UTR 0.12 TCGA-G4-6302-01 7 23545408 23545408 A G TRA2A Silent p.Y265Y 0.08 TCGA-G4-6302-01 7 2689579 2689579 C A TTYH3 Silent p.A276A 0.11 TCGA-G4-6302-01 7 2695756 2695756 A G TTYH3 Missense_Mutation p.N351D 0.06 deleterious(0) possibly_damaging(0.692) TCGA-G4-6302-01 7 27867371 27867371 G A TAX1BP1 Silent p.V700V 0.08 TCGA-G4-6302-01 7 2956997 2956997 G A CARD11 Missense_Mutation p.A877V 0.09 tolerated(0.22) benign(0.001) TCGA-G4-6302-01 7 32919301 32919303 AGG - KBTBD2 5'UTR 0.24 TCGA-G4-6302-01 7 33423434 33423434 T C BBS9 Missense_Mutation p.I649T 0.08 deleterious(0) possibly_damaging(0.501) TCGA-G4-6302-01 7 36438973 36438973 G A ANLN Missense_Mutation p.R153Q 0.09 deleterious(0) probably_damaging(0.984) TCGA-G4-6302-01 7 4153051 4153051 A G SDK1 Missense_Mutation p.S1189G 0.09 deleterious(0) probably_damaging(0.992) TCGA-G4-6302-01 7 42004306 42004306 C T GLI3 Silent p.T1455T 0.11 TCGA-G4-6302-01 7 44153444 44153444 C T AEBP1 Nonsense_Mutation p.R1021* 0.10 TCGA-G4-6302-01 7 48311791 48311791 C G ABCA13 Nonsense_Mutation p.S843* 0.15 TCGA-G4-6302-01 7 54820004 54820004 A C SEC61G 3'UTR 0.12 TCGA-G4-6302-01 7 6066526 6066526 G A EIF2AK1 Nonsense_Mutation p.R533* 0.10 TCGA-G4-6302-01 7 66301781 66301781 T C GTF2IRD1P1 RNA 0.19 TCGA-G4-6302-01 7 70255699 70255699 G A AUTS2 Missense_Mutation p.R1166Q 0.09 deleterious(0) probably_damaging(0.968) TCGA-G4-6302-01 7 70885934 70885934 C T WBSCR17 Missense_Mutation p.R269C 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-G4-6302-01 7 73768248 73768248 G A CLIP2 Silent p.G239G 0.06 TCGA-G4-6302-01 7 74193490 74193490 C - NCF1 Frame_Shift_Del p.H74Tfs*29 0.14 TCGA-G4-6302-01 7 75024749 75024749 G A TRIM73 5'Flank 0.13 TCGA-G4-6302-01 7 75050832 75050832 G T POM121C Missense_Mutation p.F901L 0.09 tolerated(0.35) probably_damaging(0.953) TCGA-G4-6302-01 7 75398898 75398898 C A CCL26 3'UTR 0.12 TCGA-G4-6302-01 7 77789493 77789493 G A MAGI2 Silent p.H898H 0.08 TCGA-G4-6302-01 7 81635131 81635131 C A CACNA2D1 Nonsense_Mutation p.G489* 0.05 TCGA-G4-6302-01 7 82764088 82764088 G A PCLO Silent p.T926T 0.08 TCGA-G4-6302-01 7 82764602 82764602 T G PCLO Missense_Mutation p.K755T 0.09 unknown(0) TCGA-G4-6302-01 7 84628703 84628703 G C SEMA3D 3'UTR 0.12 TCGA-G4-6302-01 7 87160704 87160704 A T ABCB1 Missense_Mutation p.I864N 0.08 deleterious(0.01) possibly_damaging(0.819) TCGA-G4-6302-01 7 87175289 87175289 G A ABCB1 Missense_Mutation p.R593C 0.08 deleterious(0.03) benign(0.13) TCGA-G4-6302-01 7 87908802 87908802 G A STEAP4 Silent p.L431L 0.09 TCGA-G4-6302-01 7 89933287 89933287 A - C7orf63 Frame_Shift_Del p.K687Nfs*43 0.09 TCGA-G4-6302-01 7 90895086 90895086 C T FZD1 Silent p.G297G 0.12 TCGA-G4-6302-01 7 91670153 91670153 C T AKAP9 Nonsense_Mutation p.R1620* 0.12 TCGA-G4-6302-01 7 92195357 92195357 T C FAM133B Missense_Mutation p.K210E 0.07 tolerated_low_confidence(0.14) unknown(0) TCGA-G4-6302-01 7 95025656 95025656 T C PON3 Missense_Mutation p.K3E 0.09 deleterious(0.01) unknown(0) TCGA-G4-6302-01 7 98508882 98508882 T A TRRAP Missense_Mutation p.N665K 0.08 probably_damaging(0.999) TCGA-G4-6302-01 7 98554136 98554136 G A TRRAP Missense_Mutation p.A2064T 0.10 benign(0.008) TCGA-G4-6302-01 7 98630731 98630731 C T SMURF1 Silent p.A701A 0.11 TCGA-G4-6302-01 7 99129189 99129189 G A ZKSCAN5 Missense_Mutation p.A613T 0.07 tolerated(0.14) possibly_damaging(0.874) TCGA-G4-6302-01 8 100874109 100874109 A G VPS13B Missense_Mutation p.Q3742R 0.18 tolerated(0.14) benign(0.227) TCGA-G4-6302-01 8 101153254 101153254 T - FBXO43 Frame_Shift_Del p.R410Efs*13 0.15 TCGA-G4-6302-01 8 10480427 10480427 C T RP1L1 Silent p.Q95Q 0.17 TCGA-G4-6302-01 8 105361015 105361015 C T DCSTAMP Nonsense_Mutation p.R79* 0.07 TCGA-G4-6302-01 8 109094810 109094810 G A RSPO2 Silent p.S19S 0.09 TCGA-G4-6302-01 8 113301669 113301669 G A CSMD3 Missense_Mutation p.R3025C 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-G4-6302-01 8 113301718 113301718 G A CSMD3 Silent p.G3008G 0.17 TCGA-G4-6302-01 8 11696117 11696117 G A FDFT1 Silent p.%3D 0.17 TCGA-G4-6302-01 8 125082726 125082726 G A FER1L6 Missense_Mutation p.E1285K 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 8 125498524 125498524 G A RNF139 Missense_Mutation p.V212M 0.16 deleterious(0.02) possibly_damaging(0.793) TCGA-G4-6302-01 8 132051680 132051680 C T ADCY8 Silent p.S300S 0.08 TCGA-G4-6302-01 8 134239730 134239730 G A WISP1 Missense_Mutation p.R294H 0.07 deleterious(0.04) benign(0.082) TCGA-G4-6302-01 8 134240039 134240039 C T WISP1 3'UTR 0.15 TCGA-G4-6302-01 8 136561097 136561097 C T KHDRBS3 Missense_Mutation p.A142V 0.19 deleterious(0.05) probably_damaging(0.971) TCGA-G4-6302-01 8 143427122 143427122 G T TSNARE1 Missense_Mutation p.P74T 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.702) TCGA-G4-6302-01 8 143816874 143816874 G A THEM6 3'UTR 0.18 TCGA-G4-6302-01 8 144397938 144397938 C T TOP1MT Silent p.A504A 0.11 TCGA-G4-6302-01 8 144643542 144643542 G A GSDMD Missense_Mutation p.V229I 0.15 tolerated(1) benign(0.009) TCGA-G4-6302-01 8 145254051 145254051 C - MROH1 Frame_Shift_Del p.L327Wfs*2 0.10 TCGA-G4-6302-01 8 145583387 145583387 G A SLC52A2 Missense_Mutation p.V79I 0.09 tolerated(0.29) benign(0.001) TCGA-G4-6302-01 8 145727028 145727028 C A PPP1R16A Silent p.T443T 0.16 TCGA-G4-6302-01 8 1514012 1514012 A G DLGAP2 Missense_Mutation p.E385G 0.08 tolerated(0.16) benign(0.006) TCGA-G4-6302-01 8 17088132 17088132 A G CNOT7 3'UTR 0.10 TCGA-G4-6302-01 8 22864352 22864352 C T RHOBTB2 Silent p.D220D 0.18 TCGA-G4-6302-01 8 23423813 23423813 G A SLC25A37 Missense_Mutation p.V135I 0.07 tolerated(0.48) benign(0.013) TCGA-G4-6302-01 8 24771307 24771307 A G NEFM Translation_Start_Site p.M1? 0.21 deleterious(0) unknown(0) TCGA-G4-6302-01 8 27398143 27398143 A G EPHX2 Missense_Mutation p.Y450C 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-G4-6302-01 8 27401715 27401715 A - EPHX2 Frame_Shift_Del p.R516Gfs*19 0.15 TCGA-G4-6302-01 8 27925857 27925857 G A NUGGC Missense_Mutation p.A119V 0.05 deleterious(0) probably_damaging(0.996) TCGA-G4-6302-01 8 30537081 30537081 C T GSR Missense_Mutation p.A509T 0.10 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 8 37611539 37611539 C T ERLIN2 Missense_Mutation p.A309V 0.11 tolerated(0.42) benign(0.026) TCGA-G4-6302-01 8 38173510 38173510 C T WHSC1L1 Missense_Mutation p.A636T 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-G4-6302-01 8 41397216 41397216 A G GINS4 Missense_Mutation p.H106R 0.14 tolerated(0.05) probably_damaging(0.982) TCGA-G4-6302-01 8 42611529 42611529 T - CHRNA6 Frame_Shift_Del p.V272* 0.09 TCGA-G4-6302-01 8 42612088 42612088 G T CHRNA6 Missense_Mutation p.D119E 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6302-01 8 52232386 52232386 C G PXDNL 3'UTR 0.09 TCGA-G4-6302-01 8 54147560 54147560 G T OPRK1 Silent p.S123S 0.11 TCGA-G4-6302-01 8 54792097 54792097 C - RGS20 Frame_Shift_Del p.H151Ifs*3 0.10 TCGA-G4-6302-01 8 61144866 61144866 C T CA8 Missense_Mutation p.A164T 0.09 tolerated(0.07) benign(0.266) TCGA-G4-6302-01 8 61531199 61531199 A G RAB2A Missense_Mutation p.N179D 0.11 tolerated(0.35) benign(0.002) TCGA-G4-6302-01 8 61750234 61750234 C T CHD7 Missense_Mutation p.A1398V 0.08 probably_damaging(0.997) TCGA-G4-6302-01 8 61763051 61763051 G T CHD7 Splice_Site p.X1802_splice 0.18 TCGA-G4-6302-01 8 67547565 67547565 C T VCPIP1 Missense_Mutation p.G947D 0.13 tolerated(0.29) benign(0.247) TCGA-G4-6302-01 8 68004100 68004100 T C CSPP1 Intron 0.10 TCGA-G4-6302-01 8 77618177 77618177 C T ZFHX4 Silent p.C618C 0.11 TCGA-G4-6302-01 8 80954868 80954868 A G TPD52 Missense_Mutation p.V181A 0.10 deleterious(0.02) probably_damaging(0.923) TCGA-G4-6302-01 8 8176254 8176254 T C SGK223 Missense_Mutation p.S1211G 0.19 probably_damaging(0.982) TCGA-G4-6302-01 8 86392911 86392911 C T CA2 Missense_Mutation p.R226C 0.22 deleterious(0) possibly_damaging(0.767) TCGA-G4-6302-01 8 88885872 88885872 G T DCAF4L2 Missense_Mutation p.P110T 0.08 tolerated(0.08) benign(0.334) TCGA-G4-6302-01 8 92086140 92086140 G A OTUD6B Splice_Site p.X135_splice 0.10 TCGA-G4-6302-01 8 94936574 94936574 T A PDP1 3'UTR 0.19 TCGA-G4-6302-01 9 100235780 100235780 G A TDRD7 Missense_Mutation p.A651T 0.09 tolerated(0.23) possibly_damaging(0.754) TCGA-G4-6302-01 9 100308615 100308615 A - TMOD1 Frame_Shift_Del p.K91Nfs*20 0.12 TCGA-G4-6302-01 9 108456999 108456999 T - TMEM38B Frame_Shift_Del p.F21Lfs*7 0.10 TCGA-G4-6302-01 9 111853209 111853209 C T TMEM245 Silent p.P381P 0.10 TCGA-G4-6302-01 9 112015784 112015784 T C EPB41L4B Missense_Mutation p.T406A 0.04 tolerated(0.34) benign(0.116) TCGA-G4-6302-01 9 112898486 112898486 C T PALM2-AKAP2 Missense_Mutation p.A221V 0.09 tolerated(0.3) benign(0.065) TCGA-G4-6302-01 9 115962170 115962170 C T FKBP15 Missense_Mutation p.G191D 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 9 119249664 119249664 C A ASTN2 Missense_Mutation p.K1106N 0.09 deleterious(0.01) unknown(0) TCGA-G4-6302-01 9 119625933 119625933 G T ASTN2 Silent p.R606R 0.14 TCGA-G4-6302-01 9 123163045 123163045 C T CDK5RAP2 Missense_Mutation p.G1809D 0.21 tolerated(0.07) benign(0.006) TCGA-G4-6302-01 9 123870147 123870147 A T CNTRL Missense_Mutation p.K292N 0.07 benign(0.005) TCGA-G4-6302-01 9 124111492 124111492 C T STOM Missense_Mutation p.R144H 0.06 tolerated(0.09) benign(0.177) TCGA-G4-6302-01 9 125748518 125748518 C G RABGAP1 Missense_Mutation p.T137R 0.08 tolerated(0.49) benign(0.001) TCGA-G4-6302-01 9 12821418 12821418 C T LURAP1L Missense_Mutation p.R116C 0.11 deleterious(0) probably_damaging(0.989) TCGA-G4-6302-01 9 130270178 130270178 A G FAM129B Missense_Mutation p.V541A 0.10 deleterious(0.03) possibly_damaging(0.495) TCGA-G4-6302-01 9 130502018 130502018 G A SH2D3C Missense_Mutation p.R784C 0.10 deleterious(0) probably_damaging(0.981) TCGA-G4-6302-01 9 131515805 131515805 G A ZER1 Silent p.S128S 0.10 TCGA-G4-6302-01 9 131708577 131708577 C T DOLK Missense_Mutation p.A336T 0.11 tolerated(0.39) benign(0.001) TCGA-G4-6302-01 9 131784565 131784565 G A SH3GLB2 Silent p.N67N 0.13 TCGA-G4-6302-01 9 133901753 133901753 G A LAMC3 Missense_Mutation p.R152H 0.13 tolerated(0.42) benign(0.036) TCGA-G4-6302-01 9 139342868 139342868 G - SEC16A Intron 0.14 TCGA-G4-6302-01 9 139690848 139690848 C T CCDC183 5'UTR 0.13 TCGA-G4-6302-01 9 139917472 139917472 C T ABCA2 Missense_Mutation p.G66S 0.10 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 9 139981553 139981553 T G MAN1B1 Silent p.T34T 0.11 TCGA-G4-6302-01 9 140042607 140042607 A - GRIN1 Frame_Shift_Del p.R194Gfs*32 0.09 TCGA-G4-6302-01 9 140395252 140395252 C T PNPLA7 Missense_Mutation p.G550R 0.13 deleterious(0.02) possibly_damaging(0.808) TCGA-G4-6302-01 9 140508071 140508071 T G ARRDC1 Silent p.T95T 0.16 TCGA-G4-6302-01 9 16582981 16582981 C A BNC2 Missense_Mutation p.A145S 0.14 deleterious(0) probably_damaging(0.994) TCGA-G4-6302-01 9 21077890 21077890 G A IFNB1 5'UTR 0.14 TCGA-G4-6302-01 9 27009062 27009062 A - IFT74 Frame_Shift_Del p.K212Nfs*20 0.08 TCGA-G4-6302-01 9 27294316 27294316 T - EQTN Frame_Shift_Del p.N96Tfs*43 0.08 TCGA-G4-6302-01 9 27556665 27556665 G A C9orf72 Missense_Mutation p.R329C 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-G4-6302-01 9 35664093 35664093 T C ARHGEF39 Missense_Mutation p.R129G 0.09 deleterious(0) benign(0.328) TCGA-G4-6302-01 9 35738882 35738882 C A GBA2 Missense_Mutation p.R605L 0.07 tolerated(0.18) possibly_damaging(0.602) TCGA-G4-6302-01 9 37784905 37784905 C T EXOSC3 Missense_Mutation p.G46E 0.09 tolerated(0.06) benign(0.322) TCGA-G4-6302-01 9 72962900 72962900 T - SMC5 Frame_Shift_Del p.F947Lfs*40 0.08 TCGA-G4-6302-01 9 75526891 75526891 G A ALDH1A1 Missense_Mutation p.R395C 0.08 deleterious(0.01) benign(0.102) TCGA-G4-6302-01 9 79259766 79259766 C T PRUNE2 Missense_Mutation p.E2873K 0.10 deleterious(0) probably_damaging(0.993) TCGA-G4-6302-01 9 79898561 79898561 A - VPS13A Frame_Shift_Del p.K1113Rfs*30 0.11 TCGA-G4-6302-01 9 80046268 80046268 A G GNA14 Missense_Mutation p.Y188H 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-G4-6302-01 9 85619480 85619480 C A RASEF Missense_Mutation p.G379W 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6302-01 9 86590437 86590437 C T HNRNPK Intron 0.09 TCGA-G4-6302-01 9 86618231 86618232 - A RMI1 3'UTR 0.10 TCGA-G4-6302-01 9 95572023 95572023 G - ANKRD19P RNA 0.09 TCGA-G4-6302-01 X 100490938 100490938 T C DRP2 Silent p.G69G 0.13 TCGA-G4-6302-01 X 102318153 102318153 G A BEX1 Missense_Mutation p.A17V 0.10 tolerated(0.37) benign(0.009) TCGA-G4-6302-01 X 103432837 103432839 CAG - FAM199X In_Frame_Del p.S286del 0.08 TCGA-G4-6302-01 X 10417604 10417604 C T MID1 Missense_Mutation p.R603H 0.07 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 X 107412728 107412728 G A COL4A6 Nonsense_Mutation p.R1231* 0.14 TCGA-G4-6302-01 X 109441761 109441761 T C AMMECR1 Missense_Mutation p.N330S 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.54) TCGA-G4-6302-01 X 111699627 111699627 T C ZCCHC16 3'UTR 0.14 TCGA-G4-6302-01 X 114882214 114882214 A G PLS3 Missense_Mutation p.D546G 0.05 deleterious(0) benign(0.173) TCGA-G4-6302-01 X 119421079 119421079 T C TMEM255A Splice_Site p.X119_splice 0.12 TCGA-G4-6302-01 X 119589340 119589340 A G LAMP2 Missense_Mutation p.V90A 0.10 deleterious(0.02) benign(0.15) TCGA-G4-6302-01 X 122598799 122598799 C T GRIA3 Silent p.D720D 0.07 TCGA-G4-6302-01 X 123519886 123519886 C T TENM1 Missense_Mutation p.R1906Q 0.20 tolerated(0.06) possibly_damaging(0.527) TCGA-G4-6302-01 X 125685730 125685730 G T DCAF12L1 Missense_Mutation p.L288M 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 X 127186236 127186236 C T ACTRT1 5'UTR 0.08 TCGA-G4-6302-01 X 129206382 129206382 G A ELF4 Silent p.S117S 0.09 TCGA-G4-6302-01 X 134185647 134185647 G A FAM127B 3'UTR 0.12 TCGA-G4-6302-01 X 135427420 135427421 - C GPR112 Frame_Shift_Ins p.R521Kfs*4 0.08 TCGA-G4-6302-01 X 140967026 140967026 G A MAGEC3 Silent p.P108P 0.05 TCGA-G4-6302-01 X 148068927 148068927 C T AFF2 Silent p.N1218N 0.07 TCGA-G4-6302-01 X 151092681 151092681 G A MAGEA4 Missense_Mutation p.C182Y 0.05 deleterious(0.04) probably_damaging(0.988) TCGA-G4-6302-01 X 151128438 151128438 A G GABRE Silent p.P219P 0.08 TCGA-G4-6302-01 X 151424337 151424337 T G GABRA3 Missense_Mutation p.N155T 0.07 deleterious(0) probably_damaging(0.985) TCGA-G4-6302-01 X 153578511 153578511 G A FLNA Silent p.N2407N 0.06 TCGA-G4-6302-01 X 153692307 153692307 G T PLXNA3 Missense_Mutation p.G521W 0.11 deleterious(0.02) probably_damaging(0.909) TCGA-G4-6302-01 X 154456665 154456665 G T VBP1 Splice_Site p.X96_splice 0.09 TCGA-G4-6302-01 X 23018432 23018432 C T DDX53 Silent p.N86N 0.10 TCGA-G4-6302-01 X 23411866 23411866 T C PTCHD1 Missense_Mutation p.L744S 0.05 deleterious(0) probably_damaging(0.998) TCGA-G4-6302-01 X 30327110 30327110 C T NR0B1 Missense_Mutation p.R124Q 0.07 tolerated_low_confidence(0.36) benign(0.01) TCGA-G4-6302-01 X 30327299 30327299 G A NR0B1 Missense_Mutation p.A61V 0.06 tolerated_low_confidence(0.09) benign(0.009) TCGA-G4-6302-01 X 3235540 3235540 G - MXRA5 Frame_Shift_Del p.P2061Rfs*68 0.13 TCGA-G4-6302-01 X 34962478 34962478 C T FAM47B Silent p.Y510Y 0.13 TCGA-G4-6302-01 X 37545270 37545270 C G XK Missense_Mutation p.T19R 0.11 deleterious(0.04) benign(0.389) TCGA-G4-6302-01 X 39933503 39933503 T C BCOR Missense_Mutation p.T366A 0.09 tolerated(0.07) possibly_damaging(0.696) TCGA-G4-6302-01 X 40534611 40534611 C T MED14 Silent p.T961T 0.12 TCGA-G4-6302-01 X 41588007 41588007 A - GPR82 3'UTR 0.09 TCGA-G4-6302-01 X 44008098 44008098 C T EFHC2 Silent p.A731A 0.10 TCGA-G4-6302-01 X 44703902 44703902 A G DUSP21 Missense_Mutation p.N175S 0.07 tolerated(0.66) benign(0.001) TCGA-G4-6302-01 X 44910960 44910960 T C KDM6A Missense_Mutation p.Y221H 0.09 tolerated(0.15) benign(0.072) TCGA-G4-6302-01 X 45017045 45017045 C T CXorf36 Missense_Mutation p.S196N 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-G4-6302-01 X 47041391 47041391 G A RBM10 Missense_Mutation p.G579S 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6302-01 X 48674340 48674340 C T HDAC6 Silent p.S458S 0.11 TCGA-G4-6302-01 X 48762123 48762123 C T SLC35A2 Missense_Mutation p.A355T 0.10 tolerated_low_confidence(0.47) possibly_damaging(0.499) TCGA-G4-6302-01 X 50341356 50341356 T G SHROOM4 Missense_Mutation p.K1374N 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6302-01 X 50350553 50350553 C A SHROOM4 Missense_Mutation p.G1197C 0.10 deleterious(0.01) possibly_damaging(0.721) TCGA-G4-6302-01 X 51638756 51638757 TC - MAGED1 Frame_Shift_Del p.S275* 0.09 TCGA-G4-6302-01 X 53222360 53222360 T C KDM5C Missense_Mutation p.E1491G 0.08 deleterious_low_confidence(0.03) benign(0.001) TCGA-G4-6302-01 X 53453324 53453324 C T RIBC1 Missense_Mutation p.R34W 0.13 tolerated(0.12) probably_damaging(0.994) TCGA-G4-6302-01 X 53575170 53575170 C A HUWE1 Missense_Mutation p.R3367M 0.13 possibly_damaging(0.507) TCGA-G4-6302-01 X 53589090 53589090 T C HUWE1 Silent p.E2440E 0.16 TCGA-G4-6302-01 X 53611170 53611170 T C HUWE1 Missense_Mutation p.K1713E 0.08 benign(0.013) TCGA-G4-6302-01 X 63411822 63411822 C T AMER1 Missense_Mutation p.A449T 0.08 deleterious(0.02) benign(0.005) TCGA-G4-6302-01 X 65486540 65486540 G T HEPH 3'UTR 0.09 TCGA-G4-6302-01 X 69269749 69269749 C T AWAT2 Missense_Mutation p.A12T 0.07 tolerated(0.42) benign(0.002) TCGA-G4-6302-01 X 69419148 69419148 A G DGAT2L6 Missense_Mutation p.Y38C 0.11 deleterious(0) possibly_damaging(0.905) TCGA-G4-6302-01 X 7035012 7035012 C A HDHD1 Missense_Mutation p.W42L 0.07 tolerated(0.68) benign(0) TCGA-G4-6302-01 X 70367694 70367694 C T NLGN3 Missense_Mutation p.A32V 0.05 tolerated(0.23) benign(0.164) TCGA-G4-6302-01 X 70466220 70466220 G C ZMYM3 Missense_Mutation p.S852C 0.13 deleterious(0) probably_damaging(0.993) TCGA-G4-6302-01 X 71492543 71492543 G A RPS4X Missense_Mutation p.A257V 0.12 tolerated(0.19) benign(0) TCGA-G4-6302-01 X 71822034 71822034 T G PHKA1 Missense_Mutation p.M1003L 0.10 tolerated(0.37) benign(0) TCGA-G4-6302-01 X 74742921 74742921 G A ZDHHC15 5'UTR 0.09 TCGA-G4-6302-01 X 75649221 75649221 G A MAGEE1 Missense_Mutation p.A300T 0.11 tolerated_low_confidence(0.33) benign(0.003) TCGA-G4-6302-01 X 77266973 77266974 - T ATP7A Frame_Shift_Ins p.C661Lfs*24 0.09 TCGA-G4-6302-01 X 7868697 7868697 C T PNPLA4 3'UTR 0.09 TCGA-G4-6302-01 X 79978148 79978148 G T BRWD3 Missense_Mutation p.H597N 0.06 deleterious(0) probably_damaging(0.99) TCGA-G4-6302-01 X 86887333 86887333 G T KLHL4 Missense_Mutation p.G483V 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6302-01 X 86890627 86890627 C A KLHL4 Missense_Mutation p.H593N 0.14 deleterious(0.01) possibly_damaging(0.475) TCGA-G4-6303-01 10 124351843 124351843 C T DMBT1 Silent p.G744G 0.17 TCGA-G4-6303-01 10 37430818 37430818 G T ANKRD30A Missense_Mutation p.L275F 0.14 deleterious(0.04) possibly_damaging(0.86) TCGA-G4-6303-01 10 37451719 37451719 C A ANKRD30A Missense_Mutation p.Q593K 0.16 tolerated(0.68) benign(0.009) TCGA-G4-6303-01 10 49983792 49983792 C T WDFY4 Missense_Mutation p.S935L 0.19 tolerated(0.46) benign(0.002) TCGA-G4-6303-01 10 7679198 7679198 G A ITIH5 Silent p.R215R 0.39 TCGA-G4-6303-01 10 97920005 97920005 G A ZNF518A RNA 0.19 TCGA-G4-6303-01 11 102995900 102995900 G A DYNC2H1 Missense_Mutation p.R578H 0.22 possibly_damaging(0.858) TCGA-G4-6303-01 11 118916314 118916314 G A HYOU1 Silent p.D997D 0.16 TCGA-G4-6303-01 11 4471363 4471363 G A OR52K2 Missense_Mutation p.R265H 0.05 deleterious(0.01) benign(0.103) TCGA-G4-6303-01 11 56058353 56058354 - A OR8H1 Frame_Shift_Ins p.L63Pfs*8 0.16 TCGA-G4-6303-01 11 72406615 72406615 C T ARAP1 Missense_Mutation p.R1160H 0.15 deleterious(0.02) benign(0.197) TCGA-G4-6303-01 11 85436086 85436086 C G SYTL2 Missense_Mutation p.V472L 0.44 tolerated(0.39) benign(0.006) TCGA-G4-6303-01 12 11546025 11546025 G A PRB2 Silent p.P329P 0.07 TCGA-G4-6303-01 12 122657241 122657241 C T IL31 Silent p.P71P 0.26 TCGA-G4-6303-01 12 21069306 21069306 A C SLCO1B3 3'UTR 0.29 TCGA-G4-6303-01 12 51237698 51237698 C T TMPRSS12 Silent p.G87G 0.48 TCGA-G4-6303-01 13 25479871 25479871 T G CENPJ Missense_Mutation p.I769L 0.20 tolerated(0.58) benign(0.001) TCGA-G4-6303-01 13 29599209 29599209 G A MTUS2 Missense_Mutation p.R135Q 0.74 tolerated(0.32) benign(0.003) TCGA-G4-6303-01 13 30096512 30096512 G A SLC7A1 Silent p.N377N 0.28 TCGA-G4-6303-01 13 37427624 37427624 C G SMAD9 Missense_Mutation p.V398L 0.20 deleterious(0.02) probably_damaging(0.984) TCGA-G4-6303-01 13 42729483 42729483 G A DGKH Silent p.E147E 0.26 TCGA-G4-6303-01 14 20586031 20586031 G T OR4K17 Missense_Mutation p.A156S 0.75 deleterious(0) probably_damaging(1) TCGA-G4-6303-01 14 23523449 23523449 G A CDH24 Silent p.N291N 0.79 TCGA-G4-6303-01 14 59930761 59930761 G A GPR135 Missense_Mutation p.S395L 0.24 deleterious(0) possibly_damaging(0.656) TCGA-G4-6303-01 14 72961945 72961945 G A RGS6 Missense_Mutation p.V314I 0.54 tolerated(0.31) benign(0.001) TCGA-G4-6303-01 15 78290476 78290476 A C TBC1D2B 3'UTR 0.18 TCGA-G4-6303-01 15 89015862 89015862 T C MRPS11 Missense_Mutation p.Y63H 0.46 tolerated(0.12) possibly_damaging(0.593) TCGA-G4-6303-01 16 21098245 21098245 G A DNAH3 Silent p.I934I 0.19 TCGA-G4-6303-01 16 55690656 55690656 C T SLC6A2 Missense_Mutation p.A17V 0.24 tolerated(0.38) benign(0.001) TCGA-G4-6303-01 16 67575883 67575883 A G FAM65A Silent p.P418P 0.12 TCGA-G4-6303-01 17 18140157 18140157 C T LLGL1 Silent p.C505C 0.08 TCGA-G4-6303-01 17 36486981 36486981 G A GPR179 Missense_Mutation p.T824M 0.20 tolerated(0.08) benign(0.146) TCGA-G4-6303-01 17 40312256 40312256 C T KCNH4 Silent p.T952T 0.14 TCGA-G4-6303-01 17 59853801 59853801 A C BRIP1 Silent p.T686T 0.43 TCGA-G4-6303-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.71 TCGA-G4-6303-01 18 30092243 30092243 C T WBP11P1 RNA 0.12 TCGA-G4-6303-01 19 16860089 16860089 G A NWD1 Silent p.A212A 0.70 TCGA-G4-6303-01 19 37238940 37238940 C T ZNF850 Missense_Mutation p.R1001Q 0.18 deleterious(0.03) probably_damaging(0.966) TCGA-G4-6303-01 19 38103367 38103367 G A ZNF540 Missense_Mutation p.G396R 0.22 tolerated(0.05) benign(0.015) TCGA-G4-6303-01 19 44273605 44273605 G A KCNN4 Silent p.A346A 0.22 TCGA-G4-6303-01 19 6694614 6694614 G A C3 Silent p.A994A 0.19 TCGA-G4-6303-01 19 9049432 9049432 T C MUC16 Silent p.A10733A 0.06 TCGA-G4-6303-01 1 100550989 100550989 G A SASS6 Silent p.D623D 0.32 TCGA-G4-6303-01 1 110740129 110740129 G A SLC6A17 Missense_Mutation p.V575M 0.28 deleterious(0.02) benign(0.426) TCGA-G4-6303-01 1 12024314 12024314 G A PLOD1 Missense_Mutation p.A429T 0.11 deleterious(0.01) benign(0.053) TCGA-G4-6303-01 1 147380466 147380466 C T GJA8 Silent p.S128S 0.34 TCGA-G4-6303-01 1 157504252 157504252 C T FCRL5 Intron 0.19 TCGA-G4-6303-01 1 159846529 159846529 C T CCDC19 Missense_Mutation p.R390Q 0.61 deleterious(0) probably_damaging(0.997) TCGA-G4-6303-01 1 170928697 170928697 A T MROH9 Nonsense_Mutation p.K83* 0.20 TCGA-G4-6303-01 1 214802448 214802448 A C CENPF Missense_Mutation p.Q376H 0.20 probably_damaging(0.994) TCGA-G4-6303-01 1 224585868 224585868 G A WDR26 Nonsense_Mutation p.Q569* 0.16 TCGA-G4-6303-01 1 231472162 231472162 G A EXOC8 Missense_Mutation p.R444C 0.32 deleterious(0) probably_damaging(0.991) TCGA-G4-6303-01 1 36897444 36897444 G A OSCP1 Missense_Mutation p.R159W 0.34 deleterious(0) probably_damaging(1) TCGA-G4-6303-01 1 38511549 38511549 C T POU3F1 Silent p.S289S 0.06 TCGA-G4-6303-01 1 46532702 46532702 C G PIK3R3 Missense_Mutation p.D126H 0.35 deleterious(0) probably_damaging(0.984) TCGA-G4-6303-01 1 86377068 86377068 C T COL24A1 Missense_Mutation p.E871K 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-G4-6303-01 1 95363259 95363263 AAAAC - CNN3 3'UTR 0.23 TCGA-G4-6303-01 1 9642610 9642611 - T SLC25A33 3'UTR 0.32 TCGA-G4-6303-01 20 24565547 24565547 G A SYNDIG1 Missense_Mutation p.R179Q 0.23 tolerated(0.12) probably_damaging(0.999) TCGA-G4-6303-01 20 3804562 3804562 G A AP5S1 Missense_Mutation p.R74Q 0.38 deleterious(0.04) benign(0.018) TCGA-G4-6303-01 20 40899079 40899079 C T PTPRT Intron 0.77 TCGA-G4-6303-01 20 42204951 42204951 G A SGK2 Missense_Mutation p.A321T 0.07 deleterious(0.01) benign(0.277) TCGA-G4-6303-01 20 44746990 44746990 G A CD40 Missense_Mutation p.R3H 0.09 tolerated(0.06) possibly_damaging(0.794) TCGA-G4-6303-01 21 43770114 43770114 G A TFF2 Silent p.S35S 0.26 TCGA-G4-6303-01 22 43950778 43950778 G A EFCAB6 Missense_Mutation p.R1207C 0.49 deleterious(0) probably_damaging(0.988) TCGA-G4-6303-01 22 46327044 46327044 G A WNT7B Silent p.D168D 0.54 TCGA-G4-6303-01 2 141032148 141032148 A G LRP1B Silent p.C4329C 0.21 TCGA-G4-6303-01 2 166859170 166859170 C T SCN1A Missense_Mutation p.V1366I 0.54 deleterious(0) probably_damaging(0.995) TCGA-G4-6303-01 2 203157515 203157515 G T NOP58 Nonsense_Mutation p.E266* 0.46 TCGA-G4-6303-01 2 206994851 206994851 G A NDUFS1 Nonsense_Mutation p.R571* 0.26 TCGA-G4-6303-01 2 210560755 210560755 C T MAP2 Silent p.I1287I 0.24 TCGA-G4-6303-01 2 220404235 220404235 G A CHPF Missense_Mutation p.A733V 0.57 tolerated(0.53) benign(0.01) TCGA-G4-6303-01 2 237416071 237416071 C T IQCA1 5'UTR 0.34 TCGA-G4-6303-01 2 242004885 242004885 C T SNED1 Missense_Mutation p.R962C 0.33 deleterious(0) probably_damaging(0.954) TCGA-G4-6303-01 2 38298077 38298077 C A CYP1B1 Nonsense_Mutation p.E474* 0.19 TCGA-G4-6303-01 2 76975865 76975865 T G LRRTM4 Silent p.R577R 0.30 TCGA-G4-6303-01 2 89104254 89104254 A - ANKRD36BP2 RNA 0.44 TCGA-G4-6303-01 3 112300012 112300012 G A SLC35A5 Missense_Mutation p.V350I 0.25 tolerated(0.28) benign(0.019) TCGA-G4-6303-01 3 134885845 134885845 C T EPHB1 Nonsense_Mutation p.R586* 0.38 TCGA-G4-6303-01 3 138153702 138153702 C A ESYT3 Missense_Mutation p.P21Q 0.26 deleterious(0.04) benign(0.089) TCGA-G4-6303-01 3 140695157 140695157 G A SLC25A36 Silent p.Q266Q 0.38 TCGA-G4-6303-01 3 167000053 167000054 - T ZBBX Frame_Shift_Ins p.E743Rfs*42 0.15 TCGA-G4-6303-01 3 194063344 194063344 C T CPN2 Missense_Mutation p.V30I 0.50 tolerated(0.29) benign(0.001) TCGA-G4-6303-01 3 38622687 38622687 C T SCN5A Missense_Mutation p.R988Q 0.54 tolerated(0.09) benign(0.005) TCGA-G4-6303-01 3 49698154 49698154 G A BSN Missense_Mutation p.R2959H 0.15 unknown(0) TCGA-G4-6303-01 4 13605468 13605468 C A BOD1L1 Missense_Mutation p.G1019V 0.28 probably_damaging(0.997) TCGA-G4-6303-01 4 154504723 154504723 G A KIAA0922 Missense_Mutation p.R320H 0.22 tolerated(1) benign(0.001) TCGA-G4-6303-01 4 39064252 39064252 G A KLHL5 Missense_Mutation p.D40N 0.76 tolerated_low_confidence(0.46) benign(0.014) TCGA-G4-6303-01 4 8304232 8304232 C T HTRA3 Missense_Mutation p.T365I 0.19 deleterious(0.01) probably_damaging(1) TCGA-G4-6303-01 4 96137199 96137199 T C UNC5C Intron 0.33 TCGA-G4-6303-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.86 TCGA-G4-6303-01 5 138704617 138704617 T C PAIP2 3'UTR 0.08 TCGA-G4-6303-01 5 140501672 140501672 G A PCDHB4 Missense_Mutation p.R31H 0.23 tolerated_low_confidence(0.12) benign(0.052) TCGA-G4-6303-01 5 15937088 15937088 G A FBXL7 Silent p.L423L 0.28 TCGA-G4-6303-01 5 5239937 5239937 C T ADAMTS16 Missense_Mutation p.R808W 0.45 deleterious(0.03) benign(0.056) TCGA-G4-6303-01 5 70888789 70888789 C T MCCC2 Missense_Mutation p.L56F 0.29 deleterious_low_confidence(0.01) benign(0.259) TCGA-G4-6303-01 5 7802364 7802364 G A ADCY2 Missense_Mutation p.V888I 0.16 tolerated(0.08) probably_damaging(0.991) TCGA-G4-6303-01 6 138413252 138413252 A C PERP Missense_Mutation p.F170C 0.25 deleterious(0.03) benign(0.003) TCGA-G4-6303-01 6 15497242 15497242 C T JARID2 Missense_Mutation p.R596W 0.34 deleterious(0) possibly_damaging(0.821) TCGA-G4-6303-01 6 159050803 159050803 C A TMEM181 Missense_Mutation p.L549I 0.06 tolerated(0.19) possibly_damaging(0.842) TCGA-G4-6303-01 6 163735951 163735951 G A PACRG Missense_Mutation p.G275R 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6303-01 6 165957027 165957027 G T PDE10A Missense_Mutation p.L33I 0.20 deleterious(0) probably_damaging(0.942) TCGA-G4-6303-01 6 169640566 169640566 C A THBS2 Missense_Mutation p.C338F 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6303-01 6 26027262 26027262 G A HIST1H4B Silent p.Y73Y 0.62 TCGA-G4-6303-01 6 27840077 27840077 T C HIST1H3I Missense_Mutation p.Q6R 0.15 deleterious_low_confidence(0.04) benign(0.002) TCGA-G4-6303-01 6 31733688 31733688 C T VWA7 Missense_Mutation p.R824Q 0.61 tolerated(0.25) benign(0.016) TCGA-G4-6303-01 6 37321822 37321822 C T RNF8 5'UTR 0.33 TCGA-G4-6303-01 6 41011301 41011301 C T TSPO2 Missense_Mutation p.A60V 0.22 deleterious(0) probably_damaging(0.957) TCGA-G4-6303-01 6 98472446 98472446 G A MIR2113 RNA 0.42 TCGA-G4-6303-01 6 9903670 9903670 G A OFCC1 Intron 0.48 TCGA-G4-6303-01 7 141619594 141619594 C T OR9A4 Missense_Mutation p.R307C 0.22 tolerated(0.12) benign(0.004) TCGA-G4-6303-01 7 50737430 50737430 C T GRB10 Missense_Mutation p.A165T 0.23 tolerated(0.46) benign(0) TCGA-G4-6303-01 7 6183788 6183788 G T USP42 Silent p.L317L 0.20 TCGA-G4-6303-01 8 133112326 133112326 C T HHLA1 Silent p.T101T 0.18 TCGA-G4-6303-01 8 143994114 143994114 C T CYP11B2 Silent p.L410L 0.68 TCGA-G4-6303-01 8 144645071 144645071 C G GSDMD Missense_Mutation p.H484Q 0.27 tolerated_low_confidence(0.16) benign(0) TCGA-G4-6303-01 8 48842569 48842569 C T PRKDC Silent p.E632E 0.14 TCGA-G4-6303-01 8 56987065 56987065 G T RPS20 5'UTR 0.38 TCGA-G4-6303-01 8 71128944 71128944 T A NCOA2 Missense_Mutation p.R13W 0.18 deleterious(0.03) probably_damaging(0.982) TCGA-G4-6303-01 8 89053811 89053811 C T MMP16 Missense_Mutation p.V568I 0.23 tolerated(0.14) benign(0.043) TCGA-G4-6303-01 9 117165570 117165570 G A DFNB31 Missense_Mutation p.A823V 0.45 deleterious(0) probably_damaging(0.984) TCGA-G4-6303-01 9 136501809 136501809 G A DBH Missense_Mutation p.D106N 0.52 tolerated(0.1) benign(0.089) TCGA-G4-6303-01 9 140938277 140938277 C T CACNA1B Missense_Mutation p.A1113V 0.23 tolerated(0.25) benign(0.002) TCGA-G4-6303-01 9 33071790 33071790 C T SMU1 Missense_Mutation p.R113Q 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-G4-6303-01 9 35100041 35100041 C A STOML2 Missense_Mutation p.K354N 0.23 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-G4-6303-01 9 36657327 36657327 A G MELK Silent p.L381L 0.31 TCGA-G4-6303-01 X 120181733 120181733 C G GLUD2 Missense_Mutation p.N65K 0.19 tolerated(0.4) benign(0.002) TCGA-G4-6303-01 X 120183393 120183393 G A GLUD2 3'UTR 0.17 TCGA-G4-6303-01 X 132438827 132438827 G A GPC4 Silent p.N406N 0.04 TCGA-G4-6303-01 X 133680665 133680665 C T MIR503HG 5'Flank 0.25 TCGA-G4-6303-01 X 134988659 134988659 C T SAGE1 Missense_Mutation p.R229C 0.16 deleterious(0.03) possibly_damaging(0.496) TCGA-G4-6303-01 X 34148687 34148687 G A FAM47A Missense_Mutation p.S570L 0.45 tolerated(0.57) probably_damaging(0.947) TCGA-G4-6303-01 X 62570558 62570558 G A SPIN4 Silent p.H47H 0.18 TCGA-G4-6303-01 X 64949462 64949462 C A MSN Missense_Mutation p.P119T 0.21 deleterious(0) probably_damaging(0.998) TCGA-G4-6303-01 X 70465587 70465587 C T ZMYM3 Missense_Mutation p.D931N 0.16 deleterious(0.02) benign(0.349) TCGA-G4-6303-01 X 91133712 91133712 G A PCDH11X Missense_Mutation p.V825I 0.61 tolerated(1) benign(0.009) TCGA-G4-6304-01 10 102782088 102782088 G A PDZD7 Silent p.S199S 0.18 TCGA-G4-6304-01 10 104592367 104592367 C T CYP17A1 Missense_Mutation p.R347H 0.10 deleterious(0) probably_damaging(0.976) TCGA-G4-6304-01 10 104849337 104849337 C - NT5C2 3'UTR 0.16 TCGA-G4-6304-01 10 1090086 1090086 C A IDI1 Missense_Mutation p.V56L 0.12 tolerated_low_confidence(0.33) benign(0.006) TCGA-G4-6304-01 10 114925402 114925402 C - TCF7L2 Frame_Shift_Del p.S496Pfs*5 0.11 TCGA-G4-6304-01 10 11505680 11505680 G - USP6NL Frame_Shift_Del p.P433Rfs*119 0.10 TCGA-G4-6304-01 10 115885658 115885658 T - C10orf118 Frame_Shift_Del p.N867Ifs*4 0.15 TCGA-G4-6304-01 10 124214358 124214358 G C ARMS2 Missense_Mutation p.E39Q 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.859) TCGA-G4-6304-01 10 129536030 129536030 C T FOXI2 Missense_Mutation p.R165C 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 10 13380771 13380771 G A SEPHS1 Silent p.H77H 0.13 TCGA-G4-6304-01 10 135085435 135085435 G A ADAM8 Silent p.G327G 0.10 TCGA-G4-6304-01 10 135112957 135112957 C T TUBGCP2 Missense_Mutation p.V144M 0.21 deleterious(0.04) possibly_damaging(0.81) TCGA-G4-6304-01 10 135233645 135233645 C - MTG1 Frame_Shift_Del p.P329Rfs*28 0.13 TCGA-G4-6304-01 10 14965032 14965032 C T DCLRE1C Missense_Mutation p.A337T 0.08 deleterious(0.01) benign(0.164) TCGA-G4-6304-01 10 15600163 15600163 G A ITGA8 Silent p.A892A 0.15 TCGA-G4-6304-01 10 16806468 16806468 G A RSU1 Missense_Mutation p.L68F 0.05 deleterious(0.03) possibly_damaging(0.867) TCGA-G4-6304-01 10 16979731 16979731 G A CUBN Missense_Mutation p.T1929I 0.09 tolerated(0.2) benign(0.057) TCGA-G4-6304-01 10 22828948 22828950 ATA - PIP4K2A In_Frame_Del p.Y364del 0.15 TCGA-G4-6304-01 10 22856646 22856646 G A PIP4K2A Intron 0.22 TCGA-G4-6304-01 10 33559684 33559684 G A NRP1 Missense_Mutation p.P117S 0.07 tolerated(0.36) benign(0.007) TCGA-G4-6304-01 10 35929176 35929176 C T FZD8 Silent p.A394A 0.19 TCGA-G4-6304-01 10 60027387 60027387 C G IPMK 5'UTR 0.17 TCGA-G4-6304-01 10 61572513 61572513 G A CCDC6 Missense_Mutation p.P243S 0.16 tolerated(0.07) possibly_damaging(0.708) TCGA-G4-6304-01 10 61718692 61718692 C A C10orf40 5'UTR 0.16 TCGA-G4-6304-01 10 61894126 61894126 C T ANK3 Missense_Mutation p.R915H 0.14 benign(0.129) TCGA-G4-6304-01 10 70141026 70141026 A T RUFY2 Missense_Mutation p.V392D 0.13 deleterious(0) probably_damaging(0.926) TCGA-G4-6304-01 10 72543191 72543191 C T TBATA 5'UTR 0.12 TCGA-G4-6304-01 10 73472607 73472607 T C C10orf105 3'UTR 0.15 TCGA-G4-6304-01 10 73521730 73521730 C T C10orf54 Missense_Mutation p.E46K 0.15 deleterious(0) possibly_damaging(0.695) TCGA-G4-6304-01 10 74810837 74810837 G A P4HA1 Silent p.L292L 0.09 TCGA-G4-6304-01 10 75230510 75230510 G A PPP3CB Missense_Mutation p.T306I 0.10 deleterious(0) possibly_damaging(0.732) TCGA-G4-6304-01 10 75532190 75532191 - G AC022400.2 Frame_Shift_Ins p.P64Afs*21 0.14 TCGA-G4-6304-01 10 75843264 75843264 C T VCL Missense_Mutation p.R339C 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 10 85992636 85992636 C T LRIT1 Missense_Mutation p.G307S 0.20 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 10 87482866 87482866 G A GRID1 Missense_Mutation p.R631C 0.17 deleterious(0) probably_damaging(0.97) TCGA-G4-6304-01 10 88769402 88769402 C T RP11-96C23.10 3'Flank 0.09 TCGA-G4-6304-01 10 89725184 89725184 T C PTEN Silent p.N389N 0.14 TCGA-G4-6304-01 10 99683093 99683093 G A CRTAC1 Silent p.S162S 0.07 TCGA-G4-6304-01 11 1024093 1024093 A C MUC6 Missense_Mutation p.L1079R 0.12 unknown(0) TCGA-G4-6304-01 11 102713560 102713560 G A MMP3 Nonsense_Mutation p.R65* 0.10 TCGA-G4-6304-01 11 103062892 103062892 G A DYNC2H1 Missense_Mutation p.R2536H 0.10 possibly_damaging(0.697) TCGA-G4-6304-01 11 105850472 105850472 A - GRIA4 3'UTR 0.12 TCGA-G4-6304-01 11 106810838 106810838 T C GUCY1A2 Missense_Mutation p.N185S 0.12 tolerated(0.16) possibly_damaging(0.583) TCGA-G4-6304-01 11 107326443 107326443 C T CWF19L2 Silent p.E55E 0.07 TCGA-G4-6304-01 11 108032695 108032696 - T NPAT Frame_Shift_Ins p.S1040Ifs*18 0.12 TCGA-G4-6304-01 11 108122714 108122714 G T ATM Missense_Mutation p.E586D 0.16 tolerated(0.29) benign(0.02) TCGA-G4-6304-01 11 10825869 10825869 C T EIF4G2 Missense_Mutation p.A150T 0.07 tolerated(0.41) benign(0.011) TCGA-G4-6304-01 11 113281530 113281530 G T DRD2 Silent p.V417V 0.11 TCGA-G4-6304-01 11 113673924 113673924 C - USP28 Frame_Shift_Del p.V940Sfs*5 0.13 TCGA-G4-6304-01 11 118498260 118498260 G A PHLDB1 Missense_Mutation p.A241T 0.13 deleterious(0.01) benign(0.032) TCGA-G4-6304-01 11 118769236 118769236 G - BCL9L Frame_Shift_Del p.P1463Rfs*94 0.18 TCGA-G4-6304-01 11 119185277 119185277 A G MCAM Missense_Mutation p.C161R 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 11 120343777 120343777 C T ARHGEF12 Missense_Mutation p.R992C 0.14 deleterious(0) possibly_damaging(0.503) TCGA-G4-6304-01 11 12315828 12315828 C A MICALCL Missense_Mutation p.L284I 0.12 deleterious(0.01) possibly_damaging(0.899) TCGA-G4-6304-01 11 124623837 124623837 C T ESAM Missense_Mutation p.R293Q 0.10 deleterious(0.01) possibly_damaging(0.638) TCGA-G4-6304-01 11 124790018 124790018 G T HEPACAM 3'UTR 0.18 TCGA-G4-6304-01 11 125765980 125765980 A G PUS3 Missense_Mutation p.L67P 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 11 126104959 126104959 C T FAM118B Silent p.G21G 0.15 TCGA-G4-6304-01 11 126870472 126870472 C T KIRREL3 5'UTR 0.09 TCGA-G4-6304-01 11 130131376 130131376 A T ZBTB44 Missense_Mutation p.N131K 0.08 deleterious(0.02) benign(0.407) TCGA-G4-6304-01 11 130297601 130297601 T C ADAMTS8 Missense_Mutation p.E194G 0.13 tolerated(0.24) benign(0.001) TCGA-G4-6304-01 11 132812831 132812831 C T OPCML Missense_Mutation p.A53T 0.11 deleterious(0.03) benign(0.148) TCGA-G4-6304-01 11 14541971 14541971 G A PSMA1 Intron 0.21 TCGA-G4-6304-01 11 1501640 1501640 C T MOB2 Silent p.T116T 0.13 TCGA-G4-6304-01 11 15134023 15134023 G A INSC Missense_Mutation p.R3Q 0.09 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-G4-6304-01 11 16816462 16816462 T - PLEKHA7 Frame_Shift_Del p.N838Ifs*61 0.16 TCGA-G4-6304-01 11 17653458 17653458 T C OTOG Missense_Mutation p.C2320R 0.17 probably_damaging(1) TCGA-G4-6304-01 11 17655386 17655386 G A OTOG Missense_Mutation p.R2423H 0.09 benign(0.006) TCGA-G4-6304-01 11 18332939 18332939 A G HPS5 Silent p.A93A 0.07 TCGA-G4-6304-01 11 28058163 28058164 - T KIF18A Frame_Shift_Ins p.R666Kfs*29 0.11 TCGA-G4-6304-01 11 30953458 30953458 A G DCDC1 Silent p.S919S 0.09 TCGA-G4-6304-01 11 3249626 3249626 C T MRGPRE Missense_Mutation p.R134H 0.13 tolerated(0.12) possibly_damaging(0.688) TCGA-G4-6304-01 11 32975656 32975656 C T QSER1 Silent p.S1348S 0.16 TCGA-G4-6304-01 11 33564575 33564575 C T KIAA1549L Missense_Mutation p.A192V 0.10 tolerated_low_confidence(0.17) benign(0.015) TCGA-G4-6304-01 11 34470869 34470870 GA - CAT Frame_Shift_Del p.R68Nfs*3 0.14 TCGA-G4-6304-01 11 36598366 36598366 T - RAG1 3'UTR 0.12 TCGA-G4-6304-01 11 44940850 44940850 C A TSPAN18 Nonsense_Mutation p.S140* 0.12 TCGA-G4-6304-01 11 45955569 45955570 - G PHF21A Frame_Shift_Ins p.S665Lfs*10 0.09 TCGA-G4-6304-01 11 46439535 46439535 C T AMBRA1 Missense_Mutation p.R925H 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G4-6304-01 11 4936308 4936308 C T OR51G2 Missense_Mutation p.D196N 0.10 tolerated(0.1) benign(0.027) TCGA-G4-6304-01 11 5080029 5080029 G A OR52E2 Silent p.L277L 0.09 TCGA-G4-6304-01 11 55595085 55595085 C T OR5L2 Silent p.L131L 0.15 TCGA-G4-6304-01 11 5602123 5602123 C T OR52B6 Missense_Mutation p.A6V 0.20 tolerated_low_confidence(0.15) benign(0.001) TCGA-G4-6304-01 11 56043287 56043287 T C OR5T1 Missense_Mutation p.V58A 0.16 deleterious(0.02) benign(0.027) TCGA-G4-6304-01 11 5686653 5686653 G T TRIM5 Intron 0.25 TCGA-G4-6304-01 11 57100301 57100301 G A SSRP1 Missense_Mutation p.A189V 0.12 deleterious(0) probably_damaging(0.981) TCGA-G4-6304-01 11 57472198 57472198 G A MED19 Silent p.V188V 0.08 TCGA-G4-6304-01 11 61161437 61161437 G A TMEM216 Missense_Mutation p.R73H 0.11 deleterious(0) possibly_damaging(0.706) TCGA-G4-6304-01 11 61732514 61732514 A G FTH1 Missense_Mutation p.V111A 0.12 deleterious(0.02) benign(0.441) TCGA-G4-6304-01 11 61912705 61912705 G A INCENP Missense_Mutation p.E594K 0.16 deleterious(0.02) unknown(0) TCGA-G4-6304-01 11 61913124 61913124 G T INCENP Missense_Mutation p.E620D 0.07 deleterious(0.01) unknown(0) TCGA-G4-6304-01 11 63078611 63078611 T - SLC22A10 3'UTR 0.13 TCGA-G4-6304-01 11 63175657 63175657 T C SLC22A9 Silent p.F454F 0.08 TCGA-G4-6304-01 11 63681629 63681629 G A RCOR2 Missense_Mutation p.R230W 0.13 deleterious(0.01) benign(0.063) TCGA-G4-6304-01 11 63886076 63886079 TTTC - FLRT1 3'UTR 0.09 TCGA-G4-6304-01 11 64054059 64054059 T C GPR137 Silent p.A79A 0.14 TCGA-G4-6304-01 11 6417099 6417099 C T APBB1 Missense_Mutation p.G626S 0.16 deleterious(0.02) benign(0.119) TCGA-G4-6304-01 11 64525803 64525803 A G PYGM Missense_Mutation p.M148T 0.19 deleterious(0) probably_damaging(0.973) TCGA-G4-6304-01 11 64532828 64532828 C T SF1 3'UTR 0.18 TCGA-G4-6304-01 11 64604280 64604280 C T CDC42BPG Missense_Mutation p.A439T 0.15 tolerated(0.59) benign(0.001) TCGA-G4-6304-01 11 65650552 65650552 A G CTSW Missense_Mutation p.Y253C 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-G4-6304-01 11 6568143 6568143 G T DNHD1 Missense_Mutation p.G1992C 0.09 probably_damaging(1) TCGA-G4-6304-01 11 66082270 66082270 G - CD248 Frame_Shift_Del p.R744Gfs*61 0.12 TCGA-G4-6304-01 11 66236373 66236373 C A PELI3 Missense_Mutation p.S74R 0.16 tolerated_low_confidence(0.52) benign(0.02) TCGA-G4-6304-01 11 67208801 67208801 T C CORO1B Intron 0.08 TCGA-G4-6304-01 11 67269805 67269805 C T PITPNM1 Missense_Mutation p.V125I 0.08 tolerated(0.06) benign(0.059) TCGA-G4-6304-01 11 68177394 68177394 G A LRP5 Missense_Mutation p.A702T 0.10 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 11 68773452 68773452 C T MRGPRF Missense_Mutation p.G109D 0.23 tolerated(0.14) possibly_damaging(0.907) TCGA-G4-6304-01 11 703236 703236 G T TMEM80 3'UTR 0.09 TCGA-G4-6304-01 11 7111013 7111013 C T RBMXL2 Missense_Mutation p.S221L 0.20 deleterious(0.03) benign(0.012) TCGA-G4-6304-01 11 71716395 71716395 C T NUMA1 Missense_Mutation p.G1905S 0.21 benign(0.121) TCGA-G4-6304-01 11 71804587 71804587 G A LRTOMT 5'UTR 0.12 TCGA-G4-6304-01 11 72028213 72028213 G - CLPB Frame_Shift_Del p.L339Wfs*5 0.14 TCGA-G4-6304-01 11 72406844 72406844 C T ARAP1 Silent p.T1113T 0.09 TCGA-G4-6304-01 11 72413983 72413983 G A ARAP1 Nonsense_Mutation p.Q712* 0.10 TCGA-G4-6304-01 11 72945894 72945894 C T P2RY2 Silent p.Y230Y 0.10 TCGA-G4-6304-01 11 74407600 74407600 A G CHRDL2 Silent p.P433P 0.10 TCGA-G4-6304-01 11 77301364 77301364 G - AQP11 Frame_Shift_Del p.G111Afs*9 0.12 TCGA-G4-6304-01 11 78239976 78239976 C A NARS2 Missense_Mutation p.G201C 0.13 deleterious(0.01) benign(0.012) TCGA-G4-6304-01 11 78369452 78369452 G A TENM4 Missense_Mutation p.T2654I 0.19 deleterious(0.02) benign(0.183) TCGA-G4-6304-01 11 8414113 8414113 C T STK33 Missense_Mutation p.A497T 0.13 tolerated_low_confidence(0.38) benign(0.003) TCGA-G4-6304-01 11 85436021 85436021 C T SYTL2 Silent p.T493T 0.09 TCGA-G4-6304-01 11 89537474 89537474 C T TRIM49 Missense_Mutation p.C55Y 0.10 deleterious(0.02) probably_damaging(0.96) TCGA-G4-6304-01 11 89768423 89768424 - C TRIM49C Frame_Shift_Ins p.L17Pfs*38 0.11 TCGA-G4-6304-01 11 89867944 89867944 C T NAALAD2 Silent p.G6G 0.08 TCGA-G4-6304-01 11 89883675 89883675 C A NAALAD2 Missense_Mutation p.A170D 0.11 deleterious(0) probably_damaging(0.979) TCGA-G4-6304-01 11 92600060 92600060 G A FAT3 Missense_Mutation p.V3938M 0.17 probably_damaging(0.99) TCGA-G4-6304-01 11 92624109 92624109 G A FAT3 Missense_Mutation p.V4534M 0.15 benign(0.003) TCGA-G4-6304-01 11 93129447 93129447 C T CCDC67 Missense_Mutation p.H428Y 0.14 deleterious(0.04) probably_damaging(0.915) TCGA-G4-6304-01 11 93402910 93402910 C T KIAA1731 Missense_Mutation p.P168S 0.10 deleterious(0) probably_damaging(0.995) TCGA-G4-6304-01 11 94602545 94602545 G A AMOTL1 Missense_Mutation p.A891T 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-G4-6304-01 11 9861068 9861068 G A SBF2 Silent p.N1144N 0.09 TCGA-G4-6304-01 12 101430912 101430912 C T ANO4 Missense_Mutation p.A259V 0.05 deleterious(0) probably_damaging(0.947) TCGA-G4-6304-01 12 102147237 102147237 T C GNPTAB Missense_Mutation p.Y1172C 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 12 104497020 104497020 A G HCFC2 Missense_Mutation p.Q783R 0.15 deleterious(0) possibly_damaging(0.808) TCGA-G4-6304-01 12 110778566 110778566 A G ATP2A2 Missense_Mutation p.M622V 0.09 tolerated(1) benign(0.036) TCGA-G4-6304-01 12 111471964 111471964 G A CUX2 5'UTR 0.10 TCGA-G4-6304-01 12 111801126 111801126 G A FAM109A Missense_Mutation p.R49W 0.22 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 12 113905166 113905166 C T LHX5 Missense_Mutation p.A246T 0.16 tolerated(0.07) possibly_damaging(0.449) TCGA-G4-6304-01 12 114386717 114386717 G A RBM19 Silent p.A399A 0.18 TCGA-G4-6304-01 12 11546890 11546890 G - PRB2 Frame_Shift_Del p.P41Hfs*390 0.21 TCGA-G4-6304-01 12 117660533 117660533 G T NOS1 Missense_Mutation p.P1355Q 0.08 deleterious(0.03) probably_damaging(0.941) TCGA-G4-6304-01 12 121134138 121134138 T C MLEC Silent p.P223P 0.15 TCGA-G4-6304-01 12 121176177 121176177 A G ACADS Missense_Mutation p.N240S 0.19 tolerated(0.25) benign(0.015) TCGA-G4-6304-01 12 12240322 12240322 T C BCL2L14 Splice_Site p.X203_splice 0.07 TCGA-G4-6304-01 12 122848627 122848627 G A CLIP1 Missense_Mutation p.R229W 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 12 123340695 123340695 C T HIP1R Missense_Mutation p.R433C 0.16 tolerated(0.15) benign(0.002) TCGA-G4-6304-01 12 12976925 12976925 T C DDX47 Missense_Mutation p.I291T 0.13 tolerated(0.08) benign(0.098) TCGA-G4-6304-01 12 130834473 130834473 C T PIWIL1 Silent p.A335A 0.12 TCGA-G4-6304-01 12 131283100 131283100 T - STX2 Frame_Shift_Del p.A253Lfs*14 0.16 TCGA-G4-6304-01 12 132271037 132271037 C T SFSWAP Missense_Mutation p.A865V 0.19 tolerated_low_confidence(0.09) possibly_damaging(0.682) TCGA-G4-6304-01 12 132624721 132624721 G A DDX51 Missense_Mutation p.A566V 0.11 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 12 16050903 16050903 T C STRAP Silent p.G242G 0.14 TCGA-G4-6304-01 12 18435201 18435202 - T PIK3C2G Frame_Shift_Ins p.V65Cfs*16 0.13 TCGA-G4-6304-01 12 18891444 18891444 A G CAPZA3 Missense_Mutation p.Y81C 0.14 deleterious(0.04) possibly_damaging(0.518) TCGA-G4-6304-01 12 1987478 1987478 T C CACNA2D4 Intron 0.11 TCGA-G4-6304-01 12 21614051 21614051 T - PYROXD1 Frame_Shift_Del p.P283Qfs*20 0.11 TCGA-G4-6304-01 12 25357174 25357174 A G LYRM5 Silent p.E67E 0.08 TCGA-G4-6304-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.11 deleterious(0.04) possibly_damaging(0.506) TCGA-G4-6304-01 12 32751470 32751471 - T FGD4 Frame_Shift_Ins p.L215Ffs*4 0.13 TCGA-G4-6304-01 12 3921401 3921401 C T PARP11 Missense_Mutation p.G302E 0.08 tolerated(0.14) probably_damaging(0.973) TCGA-G4-6304-01 12 41967743 41967743 C T PDZRN4 3'UTR 0.17 TCGA-G4-6304-01 12 46328016 46328016 T A SCAF11 Missense_Mutation p.N192I 0.11 deleterious(0) possibly_damaging(0.577) TCGA-G4-6304-01 12 49226267 49226267 G A DDX23 Silent p.S631S 0.12 TCGA-G4-6304-01 12 49498249 49498249 G A LMBR1L Silent p.G139G 0.16 TCGA-G4-6304-01 12 49579190 49579190 C T TUBA1A Missense_Mutation p.R320H 0.14 deleterious_low_confidence(0.03) probably_damaging(0.97) TCGA-G4-6304-01 12 52380706 52380706 C T ACVR1B Missense_Mutation p.A455V 0.08 tolerated(0.05) possibly_damaging(0.792) TCGA-G4-6304-01 12 52985383 52985383 G A KRT72 Silent p.S276S 0.07 TCGA-G4-6304-01 12 53663408 53663408 G A ESPL1 Missense_Mutation p.V228M 0.20 deleterious(0.03) possibly_damaging(0.717) TCGA-G4-6304-01 12 54686453 54686453 T - NFE2 Frame_Shift_Del p.N276Tfs*26 0.24 TCGA-G4-6304-01 12 56031459 56031459 C T OR10P1 Missense_Mutation p.R262W 0.14 deleterious(0.03) benign(0.192) TCGA-G4-6304-01 12 56295885 56295885 T C WIBG Missense_Mutation p.Q129R 0.13 tolerated(0.28) benign(0.07) TCGA-G4-6304-01 12 5674779 5674779 G A ANO2 Missense_Mutation p.S891L 0.12 deleterious(0) probably_damaging(0.998) TCGA-G4-6304-01 12 56995456 56995456 A G BAZ2A Silent p.P1317P 0.08 TCGA-G4-6304-01 12 57627112 57627112 C A SHMT2 Missense_Mutation p.A336D 0.16 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 12 58240187 58240187 C T CTDSP2 Missense_Mutation p.R11Q 0.16 tolerated(0.85) benign(0) TCGA-G4-6304-01 12 62785633 62785634 - A USP15 Frame_Shift_Ins p.R760Kfs*4 0.13 TCGA-G4-6304-01 12 64875633 64875633 T A TBK1 Missense_Mutation p.V275D 0.10 tolerated(0.65) benign(0.004) TCGA-G4-6304-01 12 64889344 64889344 G A TBK1 Missense_Mutation p.A535T 0.09 tolerated(0.58) benign(0) TCGA-G4-6304-01 12 6618882 6618882 G T NCAPD2 Splice_Site p.X43_splice 0.09 TCGA-G4-6304-01 12 6730183 6730183 G A LPAR5 Missense_Mutation p.R78C 0.14 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 12 68054233 68054234 - A DYRK2 3'UTR 0.10 TCGA-G4-6304-01 12 6839854 6839854 C T COPS7A Missense_Mutation p.T219I 0.16 deleterious(0.03) benign(0.358) TCGA-G4-6304-01 12 6976762 6976762 G A TPI1 Missense_Mutation p.G48E 0.09 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 12 7254565 7254565 C T C1RL Missense_Mutation p.R140H 0.14 tolerated(1) benign(0.013) TCGA-G4-6304-01 12 76783534 76783534 G A OSBPL8 Missense_Mutation p.R415C 0.15 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 12 78571024 78571024 C - NAV3 Frame_Shift_Del p.K1745Sfs*14 0.10 TCGA-G4-6304-01 12 80655837 80655837 C A OTOGL Missense_Mutation p.P651T 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6304-01 12 88449393 88449396 TCTC - CEP290 Frame_Shift_Del p.R2306Nfs*40 0.14 TCGA-G4-6304-01 12 88502936 88502936 T - CEP290 Frame_Shift_Del p.K797Sfs*2 0.09 TCGA-G4-6304-01 12 90003790 90003790 C T ATP2B1 Missense_Mutation p.R789H 0.11 deleterious(0) possibly_damaging(0.591) TCGA-G4-6304-01 12 9001415 9001415 C A A2ML1 Missense_Mutation p.L645I 0.13 tolerated(0.21) benign(0.006) TCGA-G4-6304-01 12 9303329 9303329 G A PZP Missense_Mutation p.T1432M 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-G4-6304-01 12 96641471 96641471 C A ELK3 Missense_Mutation p.L321I 0.08 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 12 96674540 96674540 G A CDK17 Intron 0.10 TCGA-G4-6304-01 12 9994920 9994920 G T KLRF1 Missense_Mutation p.A160S 0.15 tolerated(0.67) benign(0.014) TCGA-G4-6304-01 13 103257162 103257163 - A TPP2 Frame_Shift_Ins p.I64Nfs*3 0.10 TCGA-G4-6304-01 13 103266498 103266498 A - TPP2 Frame_Shift_Del p.N116Mfs*54 0.12 TCGA-G4-6304-01 13 103388671 103388671 C T CCDC168 Silent p.E163E 0.05 TCGA-G4-6304-01 13 109793465 109793465 G A MYO16 Silent p.A1613A 0.08 TCGA-G4-6304-01 13 20567794 20567794 A G ZMYM2 Silent p.V194V 0.06 TCGA-G4-6304-01 13 20796809 20796809 G A GJB6 3'UTR 0.14 TCGA-G4-6304-01 13 21370326 21370326 G A XPO4 Missense_Mutation p.R896W 0.16 deleterious(0) probably_damaging(0.941) TCGA-G4-6304-01 13 23910128 23910128 C T SACS Silent p.V2629V 0.07 TCGA-G4-6304-01 13 23929659 23929659 T C SACS Silent p.P364P 0.07 TCGA-G4-6304-01 13 38211735 38211735 G A TRPC4 Missense_Mutation p.R752C 0.11 deleterious(0) probably_damaging(0.987) TCGA-G4-6304-01 13 39266018 39266018 G A FREM2 Missense_Mutation p.D1513N 0.16 deleterious(0.04) benign(0.087) TCGA-G4-6304-01 13 41766588 41766588 T C KBTBD7 Silent p.L602L 0.10 TCGA-G4-6304-01 13 46585552 46585552 C A ZC3H13 Nonsense_Mutation p.E196* 0.16 TCGA-G4-6304-01 13 53421166 53421166 G A PCDH8 Missense_Mutation p.A469V 0.22 deleterious(0) possibly_damaging(0.605) TCGA-G4-6304-01 13 77817236 77817236 G A MYCBP2 Missense_Mutation p.R825W 0.05 probably_damaging(0.989) TCGA-G4-6304-01 13 99127557 99127557 A G STK24 Missense_Mutation p.L141P 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 14 101348653 101348653 G A RTL1 Missense_Mutation p.R825C 0.12 deleterious(0.01) benign(0.402) TCGA-G4-6304-01 14 102493778 102493778 G A DYNC1H1 Missense_Mutation p.R2982H 0.11 probably_damaging(0.999) TCGA-G4-6304-01 14 102500438 102500438 C T DYNC1H1 Silent p.F3513F 0.11 TCGA-G4-6304-01 14 103405948 103405948 A C CDC42BPB Missense_Mutation p.L1609R 0.09 tolerated(0.87) benign(0.342) TCGA-G4-6304-01 14 105418135 105418135 G A AHNAK2 Missense_Mutation p.A1218V 0.11 benign(0.43) TCGA-G4-6304-01 14 105420753 105420753 C - AHNAK2 Frame_Shift_Del p.F346Sfs*42 0.13 TCGA-G4-6304-01 14 106170713 106170713 G A IGHA1 3'Flank 0.15 TCGA-G4-6304-01 14 106610427 106610427 G A IGHV3-15 Silent p.Y81Y 0.12 TCGA-G4-6304-01 14 21878134 21878134 T C CHD8 Missense_Mutation p.Y747C 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 14 23354208 23354208 C T REM2 Silent p.H143H 0.10 TCGA-G4-6304-01 14 23416865 23416865 G A HAUS4 Missense_Mutation p.R262C 0.11 tolerated(0.09) benign(0) TCGA-G4-6304-01 14 23859422 23859422 C T MYH6 Silent p.A1192A 0.11 TCGA-G4-6304-01 14 23865616 23865616 G A MYH6 Missense_Mutation p.A769V 0.23 deleterious(0) probably_damaging(0.925) TCGA-G4-6304-01 14 23894972 23894972 T C MYH7 Missense_Mutation p.K740E 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 14 24760822 24760822 C G DHRS1 Missense_Mutation p.A222P 0.13 tolerated(0.24) benign(0.001) TCGA-G4-6304-01 14 24900704 24900704 G - KHNYN Frame_Shift_Del p.D80Mfs*40 0.09 TCGA-G4-6304-01 14 31071043 31071043 C T G2E3 Missense_Mutation p.R274W 0.14 deleterious(0) possibly_damaging(0.513) TCGA-G4-6304-01 14 31381313 31381313 G A STRN3 Missense_Mutation p.R484W 0.08 deleterious(0) probably_damaging(0.998) TCGA-G4-6304-01 14 31589023 31589023 T C HECTD1 Missense_Mutation p.D1763G 0.11 deleterious(0) benign(0.202) TCGA-G4-6304-01 14 31855710 31855710 G A HEATR5A Silent p.L128L 0.15 TCGA-G4-6304-01 14 34145500 34145500 C - NPAS3 Frame_Shift_Del p.P216Lfs*38 0.10 TCGA-G4-6304-01 14 35873726 35873726 T C NFKBIA Missense_Mutation p.Y42C 0.07 deleterious(0) probably_damaging(0.942) TCGA-G4-6304-01 14 36217916 36217916 G A RALGAPA1 Nonsense_Mutation p.R376* 0.13 TCGA-G4-6304-01 14 38682158 38682158 A G SSTR1 3'UTR 0.17 TCGA-G4-6304-01 14 38682270 38682270 C T SSTR1 3'UTR 0.05 TCGA-G4-6304-01 14 45590133 45590133 T C FKBP3 Missense_Mutation p.K160R 0.13 tolerated(0.14) benign(0.169) TCGA-G4-6304-01 14 50074691 50074691 T - LRR1 Frame_Shift_Del p.L287Cfs*28 0.10 TCGA-G4-6304-01 14 54997669 54997669 T C CGRRF1 Silent p.D157D 0.09 TCGA-G4-6304-01 14 55475081 55475081 A G WDHD1 Missense_Mutation p.S153P 0.13 deleterious(0) probably_damaging(0.995) TCGA-G4-6304-01 14 55511408 55511408 A G SOCS4 3'UTR 0.18 TCGA-G4-6304-01 14 59114233 59114233 C A DACT1 3'Flank 0.10 TCGA-G4-6304-01 14 64537418 64537418 C T SYNE2 Missense_Mutation p.S3496F 0.10 probably_damaging(0.982) TCGA-G4-6304-01 14 66953381 66953382 - A LINC00238 RNA 0.15 TCGA-G4-6304-01 14 71514554 71514554 T C PCNX Silent p.G1397G 0.08 TCGA-G4-6304-01 14 73989136 73989136 A G HEATR4 Missense_Mutation p.Y241H 0.20 deleterious(0) probably_damaging(0.961) TCGA-G4-6304-01 14 75580924 75580924 A G NEK9 Silent p.V285V 0.14 TCGA-G4-6304-01 14 76090985 76090985 G A FLVCR2 Missense_Mutation p.S281N 0.15 deleterious(0.04) benign(0.17) TCGA-G4-6304-01 14 86092810 86092810 A G FLRT2 3'UTR 0.14 TCGA-G4-6304-01 14 88945353 88945353 G T PTPN21 Silent p.R808R 0.15 TCGA-G4-6304-01 14 94063788 94063788 G T UNC79 Missense_Mutation p.A915S 0.11 tolerated(0.06) probably_damaging(0.997) TCGA-G4-6304-01 14 94528925 94528925 G A DDX24 Missense_Mutation p.A254V 0.18 tolerated(0.08) benign(0.179) TCGA-G4-6304-01 14 94731258 94731258 T C PPP4R4 Missense_Mutation p.M724T 0.06 tolerated_low_confidence(0.77) benign(0) TCGA-G4-6304-01 14 96917802 96917802 G A AK7 Silent p.A331A 0.15 TCGA-G4-6304-01 15 101448629 101448629 G A ALDH1A3 Missense_Mutation p.A470T 0.11 tolerated(0.11) benign(0.238) TCGA-G4-6304-01 15 101719136 101719136 A T CHSY1 Missense_Mutation p.I289N 0.12 deleterious(0.03) probably_damaging(0.988) TCGA-G4-6304-01 15 22382784 22382784 G A OR4N4 Silent p.L104L 0.06 TCGA-G4-6304-01 15 22848329 22848329 C T TUBGCP5 Missense_Mutation p.H307Y 0.09 tolerated(0.1) benign(0.279) TCGA-G4-6304-01 15 24924082 24924082 G A NPAP1 Missense_Mutation p.S1023N 0.09 tolerated_low_confidence(0.63) benign(0.006) TCGA-G4-6304-01 15 24927701 24927701 T C NPAP1 3'UTR 0.07 TCGA-G4-6304-01 15 33359244 33359244 C T FMN1 Missense_Mutation p.R281H 0.11 deleterious(0) unknown(0) TCGA-G4-6304-01 15 33842494 33842494 G T RYR3 Missense_Mutation p.A317S 0.11 benign(0.061) TCGA-G4-6304-01 15 33905486 33905486 G A RYR3 Missense_Mutation p.R756H 0.09 probably_damaging(1) TCGA-G4-6304-01 15 34656423 34656423 C A LPCAT4 Missense_Mutation p.R188L 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 15 41192668 41192668 G A VPS18 Missense_Mutation p.G551E 0.14 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 15 43367189 43367189 A G UBR1 Silent p.G172G 0.06 TCGA-G4-6304-01 15 43548789 43548789 G T TGM5 Missense_Mutation p.P178T 0.14 tolerated(0.1) possibly_damaging(0.838) TCGA-G4-6304-01 15 45007712 45007712 C T B2M Silent p.S53S 0.10 TCGA-G4-6304-01 15 52353541 52353541 G A MAPK6 Missense_Mutation p.R304Q 0.05 deleterious(0.04) benign(0.039) TCGA-G4-6304-01 15 52497231 52497231 C T MYO5C Missense_Mutation p.V1551I 0.08 tolerated(1) benign(0.001) TCGA-G4-6304-01 15 58007033 58007033 G A POLR2M 3'UTR 0.12 TCGA-G4-6304-01 15 58306380 58306380 C G ALDH1A2 Missense_Mutation p.D73H 0.15 deleterious(0) probably_damaging(0.979) TCGA-G4-6304-01 15 62985083 62985083 C T TLN2 Silent p.T386T 0.10 TCGA-G4-6304-01 15 63571414 63571414 A G APH1B Silent p.A56A 0.09 TCGA-G4-6304-01 15 65793059 65793059 C T DPP8 Missense_Mutation p.R160H 0.10 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 15 67818869 67818869 G T C15orf61 Missense_Mutation p.G154C 0.08 deleterious(0) probably_damaging(0.944) TCGA-G4-6304-01 15 71184500 71184500 G A THAP10 Missense_Mutation p.R38W 0.09 deleterious(0) possibly_damaging(0.664) TCGA-G4-6304-01 15 73615656 73615656 G T HCN4 Silent p.L926L 0.14 TCGA-G4-6304-01 15 74426468 74426468 G A ISLR2 Missense_Mutation p.R458H 0.18 tolerated(0.11) benign(0) TCGA-G4-6304-01 15 75132647 75132647 G A ULK3 Silent p.F208F 0.17 TCGA-G4-6304-01 15 75970122 75970122 C T CSPG4 Missense_Mutation p.V1686M 0.09 tolerated(0.12) benign(0.042) TCGA-G4-6304-01 15 76161317 76161318 - AGA UBE2Q2 In_Frame_Ins p.E146dup 0.08 TCGA-G4-6304-01 15 79589009 79589009 A - ANKRD34C 3'UTR 0.13 TCGA-G4-6304-01 15 81571949 81571949 G A IL16 Silent p.A305A 0.21 TCGA-G4-6304-01 15 83658789 83658789 C T FAM103A1 Silent p.Y109Y 0.10 TCGA-G4-6304-01 15 86122227 86122227 G A AKAP13 Missense_Mutation p.A310T 0.10 tolerated(0.26) benign(0.007) TCGA-G4-6304-01 15 89867381 89867381 G A POLG Missense_Mutation p.A676V 0.23 tolerated(0.21) benign(0.004) TCGA-G4-6304-01 15 90347806 90347806 C T ANPEP Missense_Mutation p.G314S 0.24 tolerated(0.06) benign(0.192) TCGA-G4-6304-01 15 90349831 90349831 C T ANPEP 5'UTR 0.15 TCGA-G4-6304-01 15 96875743 96875743 A - NR2F2 Frame_Shift_Del p.K138Sfs*7 0.11 TCGA-G4-6304-01 16 11073215 11073215 G A CLEC16A Silent p.P311P 0.18 TCGA-G4-6304-01 16 129224 129224 G A MPG 5'UTR 0.19 TCGA-G4-6304-01 16 1453293 1453293 G A UNKL Missense_Mutation p.R114C 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 16 1486791 1486791 C T CCDC154 Missense_Mutation p.A447T 0.12 tolerated(0.46) benign(0.026) TCGA-G4-6304-01 16 1545373 1545373 C T TELO2 Missense_Mutation p.A121V 0.11 tolerated(1) benign(0.004) TCGA-G4-6304-01 16 2096235 2096235 T C NTHL1 Missense_Mutation p.D91G 0.14 tolerated(0.05) benign(0.002) TCGA-G4-6304-01 16 2164418 2164418 C T PKD1 Missense_Mutation p.R869H 0.18 benign(0.298) TCGA-G4-6304-01 16 23085184 23085184 C T USP31 Missense_Mutation p.V732M 0.09 deleterious(0) probably_damaging(0.992) TCGA-G4-6304-01 16 23716379 23716379 C T ERN2 Missense_Mutation p.V275M 0.11 tolerated(0.06) benign(0.073) TCGA-G4-6304-01 16 24802619 24802619 G A TNRC6A Missense_Mutation p.G886S 0.13 tolerated(0.06) probably_damaging(1) TCGA-G4-6304-01 16 28509805 28509805 G - APOBR Frame_Shift_Del p.G1092Afs*8 0.15 TCGA-G4-6304-01 16 28617107 28617107 G A SULT1A1 3'UTR 0.09 TCGA-G4-6304-01 16 28843708 28843709 - C ATXN2L Frame_Shift_Ins p.T504Hfs*33 0.11 TCGA-G4-6304-01 16 28899009 28899009 T C ATP2A1 Silent p.I298I 0.08 TCGA-G4-6304-01 16 28990544 28990544 G A SPNS1 Silent p.A171A 0.10 TCGA-G4-6304-01 16 2983574 2983574 G A FLYWCH1 Missense_Mutation p.A413T 0.18 tolerated(0.52) benign(0.167) TCGA-G4-6304-01 16 29989060 29989060 C T TAOK2 Intron 0.14 TCGA-G4-6304-01 16 30012763 30012763 C A INO80E Missense_Mutation p.P142H 0.10 deleterious(0.01) possibly_damaging(0.601) TCGA-G4-6304-01 16 30094135 30094135 C T PPP4C Silent p.S90S 0.09 TCGA-G4-6304-01 16 3063479 3063479 G T CLDN9 Missense_Mutation p.S39I 0.10 deleterious(0) benign(0.029) TCGA-G4-6304-01 16 30740851 30740851 C T SRCAP Missense_Mutation p.R2029C 0.09 probably_damaging(0.973) TCGA-G4-6304-01 16 30777533 30777533 G A RNF40 Missense_Mutation p.S348N 0.06 tolerated(1) benign(0.004) TCGA-G4-6304-01 16 31049880 31049880 C T STX4 Missense_Mutation p.A205V 0.15 deleterious(0) benign(0.446) TCGA-G4-6304-01 16 31073363 31073363 G A ZNF668 Missense_Mutation p.R319C 0.25 deleterious(0) probably_damaging(0.971) TCGA-G4-6304-01 16 31073392 31073392 C G ZNF668 Missense_Mutation p.G309A 0.15 tolerated(0.06) benign(0.054) TCGA-G4-6304-01 16 31448211 31448211 C T ZNF843 5'UTR 0.25 TCGA-G4-6304-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.20 TCGA-G4-6304-01 16 3452111 3452111 A - ZNF174 Frame_Shift_Del p.N38Tfs*53 0.18 TCGA-G4-6304-01 16 3706103 3706103 G T DNASE1 Missense_Mutation p.Q79H 0.15 deleterious(0.05) benign(0.223) TCGA-G4-6304-01 16 3788672 3788672 G A CREBBP Missense_Mutation p.R1428C 0.22 unknown(0) TCGA-G4-6304-01 16 4043408 4043408 T A ADCY9 Missense_Mutation p.K663M 0.06 deleterious(0.01) probably_damaging(0.919) TCGA-G4-6304-01 16 48173233 48173233 C T ABCC12 Silent p.L224L 0.14 TCGA-G4-6304-01 16 48594725 48594725 T - N4BP1 Frame_Shift_Del p.N610Mfs*8 0.11 TCGA-G4-6304-01 16 570794 570794 C T RAB11FIP3 Silent p.I742I 0.12 TCGA-G4-6304-01 16 57416417 57416417 G A CX3CL1 Missense_Mutation p.D223N 0.12 tolerated(0.13) benign(0.01) TCGA-G4-6304-01 16 57465077 57465077 C A CIAPIN1 Missense_Mutation p.K244N 0.19 deleterious(0) possibly_damaging(0.903) TCGA-G4-6304-01 16 57601393 57601393 A G GPR114 Silent p.P237P 0.20 TCGA-G4-6304-01 16 58581097 58581097 C T CNOT1 Missense_Mutation p.R1248H 0.09 deleterious(0.02) benign(0.321) TCGA-G4-6304-01 16 58756148 58756148 T C GOT2 Missense_Mutation p.K94R 0.17 deleterious(0.03) possibly_damaging(0.888) TCGA-G4-6304-01 16 61891119 61891119 C T CDH8 Missense_Mutation p.A191T 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6304-01 16 66885423 66885423 G T CA7 Missense_Mutation p.A139S 0.10 tolerated(0.23) probably_damaging(0.992) TCGA-G4-6304-01 16 67201405 67201405 A G HSF4 Missense_Mutation p.S253G 0.13 deleterious(0.01) benign(0.129) TCGA-G4-6304-01 16 67222775 67222775 C T EXOC3L1 Silent p.V92V 0.13 TCGA-G4-6304-01 16 69143446 69143446 G A HAS3 Missense_Mutation p.A50T 0.10 tolerated(0.08) benign(0.102) TCGA-G4-6304-01 16 71604215 71604215 C T TAT Missense_Mutation p.R333H 0.10 tolerated(0.12) benign(0.007) TCGA-G4-6304-01 16 71888772 71888772 A G ATXN1L 3'UTR 0.09 TCGA-G4-6304-01 16 74335475 74335475 G A PSMD7 Nonsense_Mutation p.W94* 0.10 TCGA-G4-6304-01 16 80838165 80838165 C T CDYL2 5'UTR 0.11 TCGA-G4-6304-01 16 81167240 81167240 C T PKD1L2 RNA 0.14 TCGA-G4-6304-01 16 81303983 81303983 A G BCMO1 Missense_Mutation p.T355A 0.11 tolerated(0.36) benign(0.012) TCGA-G4-6304-01 16 84516292 84516292 G A TLDC1 Missense_Mutation p.S328F 0.11 deleterious(0) probably_damaging(0.986) TCGA-G4-6304-01 16 85015489 85015489 C T ZDHHC7 Missense_Mutation p.A180T 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 16 85701896 85701896 C T GSE1 Missense_Mutation p.T1094I 0.11 tolerated(0.27) benign(0.017) TCGA-G4-6304-01 16 89347980 89347980 G A ANKRD11 Missense_Mutation p.S1657L 0.09 benign(0.001) TCGA-G4-6304-01 16 90002190 90002190 C T TUBB3 Missense_Mutation p.S444L 0.10 tolerated_low_confidence(0.25) unknown(0) TCGA-G4-6304-01 17 10419537 10419537 G T MYH1 Silent p.R109R 0.08 TCGA-G4-6304-01 17 1384121 1384121 T C MYO1C Missense_Mutation p.H229R 0.11 tolerated(0.13) benign(0.186) TCGA-G4-6304-01 17 14139958 14139958 G C CDRT15 Missense_Mutation p.P65A 0.12 tolerated_low_confidence(0.29) probably_damaging(0.981) TCGA-G4-6304-01 17 18604742 18604742 G A TRIM16L 5'UTR 0.06 TCGA-G4-6304-01 17 19237474 19237474 A G EPN2 Silent p.P611P 0.09 TCGA-G4-6304-01 17 21438785 21438785 G A C17orf51 Missense_Mutation p.P148S 0.06 tolerated_low_confidence(0.09) benign(0.047) TCGA-G4-6304-01 17 263261 263261 C T C17orf97 Silent p.P209P 0.14 TCGA-G4-6304-01 17 26950969 26950969 C A KIAA0100 Missense_Mutation p.A1590S 0.09 deleterious(0.04) benign(0.109) TCGA-G4-6304-01 17 29161706 29161706 A - ATAD5 Frame_Shift_Del p.K204Sfs*2 0.09 TCGA-G4-6304-01 17 29645742 29645742 G T EVI2A Missense_Mutation p.P120H 0.11 deleterious(0) probably_damaging(0.939) TCGA-G4-6304-01 17 30815774 30815774 C T CDK5R1 3'UTR 0.14 TCGA-G4-6304-01 17 3119640 3119640 C A OR1A1 Silent p.S242S 0.13 TCGA-G4-6304-01 17 31355263 31355263 G A ASIC2 Missense_Mutation p.P379S 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6304-01 17 32598944 32598944 T C CCL7 3'UTR 0.28 TCGA-G4-6304-01 17 32953302 32953302 G A TMEM132E Missense_Mutation p.R75H 0.12 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 17 33586205 33586205 G T SLFN5 Missense_Mutation p.G166C 0.07 tolerated(0.06) possibly_damaging(0.501) TCGA-G4-6304-01 17 35609829 35609829 T A ACACA Missense_Mutation p.I654L 0.11 deleterious(0) possibly_damaging(0.902) TCGA-G4-6304-01 17 37417783 37417783 G A FBXL20 Missense_Mutation p.A414V 0.13 deleterious(0) possibly_damaging(0.735) TCGA-G4-6304-01 17 37557626 37557626 C A FBXL20 Missense_Mutation p.K10N 0.12 tolerated(0.26) benign(0.002) TCGA-G4-6304-01 17 37790197 37790197 C A PPP1R1B Silent p.A101A 0.13 TCGA-G4-6304-01 17 38936669 38936669 C T KRT27 Silent p.A189A 0.14 TCGA-G4-6304-01 17 39115110 39115110 G A KRT39 Missense_Mutation p.R407C 0.09 deleterious(0) benign(0) TCGA-G4-6304-01 17 3924509 3924509 G A ZZEF1 Missense_Mutation p.R2440W 0.11 deleterious(0.01) benign(0.339) TCGA-G4-6304-01 17 39553527 39553527 G A KRT31 Missense_Mutation p.R89W 0.11 deleterious(0.02) benign(0.02) TCGA-G4-6304-01 17 4087186 4087186 G A ANKFY1 Silent p.T615T 0.15 TCGA-G4-6304-01 17 40996622 40996622 A G AOC2 5'UTR 0.08 TCGA-G4-6304-01 17 41477713 41477713 C - ARL4D 3'UTR 0.16 TCGA-G4-6304-01 17 42815766 42815766 G A DBF4B Silent p.P229P 0.13 TCGA-G4-6304-01 17 44091640 44091640 G A MAPT Missense_Mutation p.S651N 0.19 deleterious(0) probably_damaging(0.99) TCGA-G4-6304-01 17 4536514 4536514 C T ALOX15 Missense_Mutation p.D449N 0.15 deleterious(0.05) probably_damaging(0.971) TCGA-G4-6304-01 17 46629659 46629659 C T HOXB3 Missense_Mutation p.A60T 0.15 tolerated(0.72) benign(0) TCGA-G4-6304-01 17 4848102 4848102 G A RNF167 Missense_Mutation p.E282K 0.19 tolerated(0.24) benign(0.039) TCGA-G4-6304-01 17 48746536 48746536 C A ABCC3 Missense_Mutation p.A658D 0.09 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 17 48917264 48917264 G A WFIKKN2 Silent p.L205L 0.14 TCGA-G4-6304-01 17 56404078 56404078 C T BZRAP1 Missense_Mutation p.R136H 0.12 tolerated(0.12) benign(0.009) TCGA-G4-6304-01 17 61568687 61568687 C T ACE Missense_Mutation p.R953W 0.07 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 17 61949600 61949600 G A CSH2 Silent p.D180D 0.05 TCGA-G4-6304-01 17 63533850 63533850 G A AXIN2 Missense_Mutation p.P435L 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 17 6373683 6373683 T C PITPNM3 Missense_Mutation p.Y557C 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 17 65074570 65074570 G A HELZ Missense_Mutation p.A1876V 0.23 tolerated_low_confidence(0.45) unknown(0) TCGA-G4-6304-01 17 66915582 66915582 T C ABCA8 Missense_Mutation p.M550V 0.09 tolerated(0.31) benign(0.005) TCGA-G4-6304-01 17 66915596 66915596 T C ABCA8 Missense_Mutation p.N545S 0.11 tolerated(0.49) benign(0.41) TCGA-G4-6304-01 17 6945118 6945118 G T SLC16A11 Silent p.S432S 0.11 TCGA-G4-6304-01 17 70118919 70118919 A C SOX9 Missense_Mutation p.Q164P 0.15 deleterious(0.01) possibly_damaging(0.478) TCGA-G4-6304-01 17 71205848 71205848 C T FAM104A Silent p.P148P 0.21 TCGA-G4-6304-01 17 71281973 71281973 T C CDC42EP4 Missense_Mutation p.S223G 0.10 tolerated(0.25) probably_damaging(0.993) TCGA-G4-6304-01 17 72926906 72926906 G A OTOP2 Silent p.A392A 0.15 TCGA-G4-6304-01 17 7318115 7318115 C T NLGN2 Silent p.S264S 0.16 TCGA-G4-6304-01 17 73491399 73491401 GGA - KIAA0195 In_Frame_Del p.E924del 0.16 TCGA-G4-6304-01 17 7369209 7369209 G A ZBTB4 Silent p.G304G 0.08 TCGA-G4-6304-01 17 73747158 73747158 C T ITGB4 Silent p.Y1253Y 0.16 TCGA-G4-6304-01 17 73918106 73918106 T C FBF1 Silent p.Q467Q 0.11 TCGA-G4-6304-01 17 76972182 76972182 C T LGALS3BP Missense_Mutation p.V37M 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 17 78263506 78263506 G C RNF213 Missense_Mutation p.V328L 0.07 benign(0.006) TCGA-G4-6304-01 17 78328364 78328364 C T RNF213 Missense_Mutation p.A3617V 0.14 possibly_damaging(0.755) TCGA-G4-6304-01 17 78337441 78337441 G A RNF213 Silent p.T3867T 0.11 TCGA-G4-6304-01 17 79220832 79220832 C T SLC38A10 Missense_Mutation p.A699T 0.14 deleterious(0.01) possibly_damaging(0.747) TCGA-G4-6304-01 17 79268712 79268712 C T SLC38A10 Missense_Mutation p.A4T 0.13 deleterious(0) probably_damaging(0.957) TCGA-G4-6304-01 17 79287756 79287756 G A TMEM105 Nonsense_Mutation p.Q29* 0.11 TCGA-G4-6304-01 17 8000061 8000061 C T ALOXE3 Missense_Mutation p.A806T 0.10 tolerated(0.24) benign(0.062) TCGA-G4-6304-01 17 80043276 80043276 G A FASN Silent p.D1375D 0.16 TCGA-G4-6304-01 17 8064968 8064968 G A VAMP2 Silent p.S80S 0.11 TCGA-G4-6304-01 17 9808296 9808296 G A RCVRN Missense_Mutation p.H68Y 0.13 tolerated(0.33) probably_damaging(0.999) TCGA-G4-6304-01 18 10485648 10485648 T G APCDD1 Missense_Mutation p.W322G 0.12 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 18 12028084 12028084 G A IMPA2 Missense_Mutation p.R178H 0.10 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 18 14848777 14848777 A - ANKRD30B Frame_Shift_Del p.D965Ifs*30 0.08 TCGA-G4-6304-01 18 19371367 19371367 C T MIB1 Missense_Mutation p.A314V 0.11 tolerated(1) benign(0.001) TCGA-G4-6304-01 18 21111681 21111681 T - NPC1 3'UTR 0.16 TCGA-G4-6304-01 18 28934292 28934292 A G DSG1 Silent p.G711G 0.08 TCGA-G4-6304-01 18 29340799 29340799 C T SLC25A52 5'UTR 0.12 TCGA-G4-6304-01 18 32409143 32409143 C T DTNA Intron 0.12 TCGA-G4-6304-01 18 33289756 33289756 A - GALNT1 3'UTR 0.19 TCGA-G4-6304-01 18 33734939 33734939 T C ELP2 Missense_Mutation p.W483R 0.11 deleterious(0) probably_damaging(0.993) TCGA-G4-6304-01 18 46570549 46570549 T C DYM Missense_Mutation p.Y629C 0.11 deleterious(0) probably_damaging(0.995) TCGA-G4-6304-01 18 47369686 47369686 C T MYO5B Silent p.A1512A 0.19 TCGA-G4-6304-01 18 48346420 48346420 C T MRO 5'UTR 0.14 TCGA-G4-6304-01 18 48603020 48603020 C T SMAD4 Missense_Mutation p.R441C 0.12 deleterious(0.01) benign(0.371) TCGA-G4-6304-01 18 50918135 50918135 A G DCC Missense_Mutation p.T856A 0.12 deleterious(0.01) benign(0.008) TCGA-G4-6304-01 18 5419732 5419732 G A EPB41L3 Missense_Mutation p.S495L 0.10 tolerated(0.19) benign(0.001) TCGA-G4-6304-01 18 61652328 61652328 A - SERPINB8 Frame_Shift_Del p.K192Rfs*5 0.16 TCGA-G4-6304-01 18 65180724 65180724 C T DSEL Missense_Mutation p.M384I 0.10 tolerated(0.27) probably_damaging(0.925) TCGA-G4-6304-01 18 7011389 7011389 G - LAMA1 Frame_Shift_Del p.D1200Tfs*38 0.11 TCGA-G4-6304-01 18 71959160 71959160 G A CYB5A 5'UTR 0.10 TCGA-G4-6304-01 18 74092247 74092247 C T ZNF516 Missense_Mutation p.R608H 0.21 tolerated(0.64) benign(0.001) TCGA-G4-6304-01 18 76754251 76754251 C A SALL3 Missense_Mutation p.L754M 0.07 deleterious(0) probably_damaging(0.998) TCGA-G4-6304-01 18 77733751 77733751 G A TXNL4A Silent p.R121R 0.08 TCGA-G4-6304-01 19 10104342 10104342 G A COL5A3 Missense_Mutation p.R550C 0.08 unknown(0) TCGA-G4-6304-01 19 10662633 10662633 T C ATG4D Missense_Mutation p.Y343H 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 19 10692049 10692049 A C AP1M2 Missense_Mutation p.V189G 0.14 deleterious(0) possibly_damaging(0.864) TCGA-G4-6304-01 19 11304575 11304575 G A KANK2 Missense_Mutation p.R61C 0.25 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 19 11657703 11657703 C T CNN1 Silent p.H103H 0.12 TCGA-G4-6304-01 19 12185179 12185179 A - ZNF844 Frame_Shift_Del p.K46Nfs*18 0.09 TCGA-G4-6304-01 19 12256484 12256484 G A ZNF625 Silent p.C249C 0.08 TCGA-G4-6304-01 19 14153362 14153362 A G IL27RA Missense_Mutation p.E211G 0.12 deleterious(0) benign(0.147) TCGA-G4-6304-01 19 15298066 15298066 C T NOTCH3 Missense_Mutation p.A564T 0.08 deleterious(0.03) probably_damaging(0.955) TCGA-G4-6304-01 19 15366908 15366908 G A BRD4 Missense_Mutation p.T573M 0.05 benign(0.029) TCGA-G4-6304-01 19 15760811 15760811 C T CYP4F3 Silent p.L246L 0.16 TCGA-G4-6304-01 19 16910772 16910772 C A NWD1 Missense_Mutation p.R1179S 0.12 tolerated(0.39) benign(0.017) TCGA-G4-6304-01 19 17692147 17692147 G A COLGALT1 Missense_Mutation p.R588H 0.16 deleterious(0) probably_damaging(0.985) TCGA-G4-6304-01 19 18271331 18271331 C - PIK3R2 Frame_Shift_Del p.P126Lfs*4 0.11 TCGA-G4-6304-01 19 19612025 19612025 G A GATAD2A Missense_Mutation p.G434S 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 19 19756088 19756088 G A ATP13A1 3'UTR 0.20 TCGA-G4-6304-01 19 20727464 20727464 G A ZNF737 Silent p.G515G 0.13 TCGA-G4-6304-01 19 21349141 21349141 A T ZNF431 Missense_Mutation p.T34S 0.07 tolerated(0.78) benign(0.115) TCGA-G4-6304-01 19 2352993 2352993 A G LLfos-48D6.1 Intron 0.10 TCGA-G4-6304-01 19 2810692 2810692 C T THOP1 Missense_Mutation p.T566M 0.24 tolerated(0.07) probably_damaging(0.967) TCGA-G4-6304-01 19 2811639 2811639 C T THOP1 Silent p.Y605Y 0.11 TCGA-G4-6304-01 19 3011085 3011085 C T TLE2 Missense_Mutation p.G316E 0.11 deleterious(0) probably_damaging(0.952) TCGA-G4-6304-01 19 36048684 36048684 G - ATP4A Frame_Shift_Del p.E523Sfs*49 0.10 TCGA-G4-6304-01 19 36103770 36103770 G A HAUS5 Missense_Mutation p.R25Q 0.09 tolerated(0.12) benign(0.069) TCGA-G4-6304-01 19 36214082 36214082 C T KMT2B Missense_Mutation p.R970W 0.13 probably_damaging(0.993) TCGA-G4-6304-01 19 36278933 36278933 C T ARHGAP33 Nonsense_Mutation p.Q995* 0.08 TCGA-G4-6304-01 19 36339936 36339936 C A NPHS1 Missense_Mutation p.E318D 0.11 deleterious(0.02) possibly_damaging(0.794) TCGA-G4-6304-01 19 37211241 37211241 G A ZNF567 Missense_Mutation p.G508R 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 19 37733582 37733582 G A ZNF383 Missense_Mutation p.M148I 0.08 tolerated(0.37) benign(0.002) TCGA-G4-6304-01 19 38159408 38159408 C T ZNF781 3'UTR 0.21 TCGA-G4-6304-01 19 3823375 3823375 A C ZFR2 Missense_Mutation p.C414G 0.11 tolerated(0.27) benign(0) TCGA-G4-6304-01 19 38378676 38378676 C T WDR87 Missense_Mutation p.A1840T 0.04 benign(0.113) TCGA-G4-6304-01 19 39804759 39804759 G A LRFN1 Silent p.P406P 0.19 TCGA-G4-6304-01 19 39911752 39911752 C T PLEKHG2 Silent p.N495N 0.17 TCGA-G4-6304-01 19 39962135 39962135 C A SUPT5H Missense_Mutation p.P606T 0.14 deleterious(0.03) benign(0.399) TCGA-G4-6304-01 19 39964065 39964065 C - SUPT5H Frame_Shift_Del p.P800Hfs*154 0.18 TCGA-G4-6304-01 19 40895457 40895457 A G HIPK4 Missense_Mutation p.L118P 0.13 tolerated(0.2) probably_damaging(0.928) TCGA-G4-6304-01 19 41893466 41893466 G A EXOSC5 Missense_Mutation p.R190W 0.16 tolerated(0.08) benign(0.014) TCGA-G4-6304-01 19 42260653 42260653 C T CEACAM6 Silent p.G70G 0.12 TCGA-G4-6304-01 19 42914586 42914586 C T LIPE Missense_Mutation p.R431H 0.17 tolerated(0.27) benign(0.075) TCGA-G4-6304-01 19 4345957 4345957 G A MPND Silent p.T170T 0.11 TCGA-G4-6304-01 19 43568637 43568637 A G PSG2 3'UTR 0.11 TCGA-G4-6304-01 19 44284973 44284973 C T KCNN4 Missense_Mutation p.R14H 0.18 tolerated(0.62) unknown(0) TCGA-G4-6304-01 19 44513051 44513051 C T ZNF230 Missense_Mutation p.T42M 0.07 deleterious(0.02) benign(0.113) TCGA-G4-6304-01 19 44605374 44605374 T A ZNF224 Missense_Mutation p.N77K 0.11 tolerated(0.39) possibly_damaging(0.652) TCGA-G4-6304-01 19 44635941 44635941 C T ZNF225 Nonsense_Mutation p.R392* 0.15 TCGA-G4-6304-01 19 45922413 45922413 C T ERCC1 Silent p.R156R 0.16 TCGA-G4-6304-01 19 46834443 46834443 C T HIF3A Silent p.D581D 0.24 TCGA-G4-6304-01 19 47725077 47725077 G - BBC3 Frame_Shift_Del p.R223Efs*6 0.13 TCGA-G4-6304-01 19 47933487 47933487 G T SLC8A2 Nonsense_Mutation p.Y875* 0.13 TCGA-G4-6304-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.18 TCGA-G4-6304-01 19 48244252 48244252 C T EHD2 Nonsense_Mutation p.Q399* 0.23 TCGA-G4-6304-01 19 49005723 49005723 A G LMTK3 Missense_Mutation p.L283P 0.10 probably_damaging(0.988) TCGA-G4-6304-01 19 49090633 49090633 T C SULT2B1 Missense_Mutation p.L121P 0.14 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 19 49472714 49472714 G A GYS1 Missense_Mutation p.A682V 0.12 tolerated_low_confidence(0.09) benign(0.031) TCGA-G4-6304-01 19 49519313 49519313 C T LHB 3'UTR 0.19 TCGA-G4-6304-01 19 50434211 50434211 C - ATF5 Frame_Shift_Del p.L37Wfs*31 0.10 TCGA-G4-6304-01 19 50475331 50475331 C T VRK3 3'Flank 0.15 TCGA-G4-6304-01 19 50931347 50931347 C T SPIB Silent p.R181R 0.14 TCGA-G4-6304-01 19 51274740 51274740 C T GPR32 Silent p.L295L 0.14 TCGA-G4-6304-01 19 51512546 51512546 G - KLK9 Frame_Shift_Del p.N32Tfs*83 0.12 TCGA-G4-6304-01 19 5211733 5211733 T C PTPRS Missense_Mutation p.N1701S 0.08 tolerated(0.08) benign(0.001) TCGA-G4-6304-01 19 52195901 52195901 G A SPACA6P-AS RNA 0.13 TCGA-G4-6304-01 19 52272081 52272081 G A FPR2 Missense_Mutation p.R57H 0.12 tolerated(0.48) benign(0.044) TCGA-G4-6304-01 19 5244249 5244249 C - PTPRS Frame_Shift_Del p.S414Afs*30 0.14 TCGA-G4-6304-01 19 52618714 52618714 C T ZNF616 Missense_Mutation p.R568Q 0.13 tolerated(1) benign(0.003) TCGA-G4-6304-01 19 52888438 52888438 A - ZNF880 Frame_Shift_Del p.K537Nfs*60 0.12 TCGA-G4-6304-01 19 53589533 53589533 T C ZNF160 5'UTR 0.20 TCGA-G4-6304-01 19 53994772 53994772 A G ZNF813 Missense_Mutation p.H429R 0.10 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 19 54242644 54242644 C T MIR518A2 RNA 0.15 TCGA-G4-6304-01 19 54312936 54312936 G A NLRP12 Silent p.S659S 0.16 TCGA-G4-6304-01 19 54656703 54656703 C T CNOT3 Silent p.T668T 0.11 TCGA-G4-6304-01 19 54697322 54697322 G A TSEN34 3'UTR 0.20 TCGA-G4-6304-01 19 54744194 54744194 T C LILRA6 Missense_Mutation p.H405R 0.10 deleterious(0) benign(0.017) TCGA-G4-6304-01 19 55086863 55086863 C T LILRA2 Missense_Mutation p.R266C 0.13 tolerated(0.07) benign(0.052) TCGA-G4-6304-01 19 55417659 55417659 C T NCR1 Silent p.L13L 0.10 TCGA-G4-6304-01 19 55496430 55496430 G T NLRP2 Missense_Mutation p.Q682H 0.17 tolerated(0.23) benign(0) TCGA-G4-6304-01 19 55993147 55993147 G A ZNF628 Missense_Mutation p.R196H 0.12 deleterious(0.01) possibly_damaging(0.843) TCGA-G4-6304-01 19 57175908 57175908 C T ZNF835 Missense_Mutation p.R220Q 0.16 deleterious(0) possibly_damaging(0.642) TCGA-G4-6304-01 19 57772901 57772902 - TG CTC-444N24.8 RNA 0.23 TCGA-G4-6304-01 19 58198644 58198644 G A ZNF551 Missense_Mutation p.R334H 0.30 tolerated(0.19) benign(0.001) TCGA-G4-6304-01 19 58367541 58367541 G A CTD-2583A14.10 Missense_Mutation p.A35T 0.15 tolerated(0.13) benign(0.167) TCGA-G4-6304-01 19 58388409 58388409 C T ZNF814 Missense_Mutation p.G13D 0.12 tolerated(0.26) probably_damaging(0.959) TCGA-G4-6304-01 19 58565076 58565076 C T ZSCAN1 Missense_Mutation p.A295V 0.15 tolerated(0.05) benign(0.011) TCGA-G4-6304-01 19 624751 624751 T C POLRMT Missense_Mutation p.T370A 0.12 tolerated(0.1) benign(0.206) TCGA-G4-6304-01 19 6422422 6422422 G A KHSRP Missense_Mutation p.A92V 0.15 tolerated(0.12) benign(0.005) TCGA-G4-6304-01 19 6924761 6924761 G A EMR1 Missense_Mutation p.A622T 0.18 tolerated(0.06) benign(0.358) TCGA-G4-6304-01 19 7082986 7082986 C T ZNF557 Missense_Mutation p.T175I 0.16 tolerated(0.05) possibly_damaging(0.483) TCGA-G4-6304-01 19 7128927 7128927 G A INSR Missense_Mutation p.P961S 0.12 tolerated(0.08) possibly_damaging(0.723) TCGA-G4-6304-01 19 7594034 7594034 G A MCOLN1 Silent p.T394T 0.12 TCGA-G4-6304-01 19 7673022 7673022 G A CAMSAP3 Missense_Mutation p.R238H 0.13 deleterious(0) probably_damaging(0.95) TCGA-G4-6304-01 19 7976181 7976181 T A MAP2K7 Missense_Mutation p.I301N 0.16 deleterious(0) probably_damaging(0.98) TCGA-G4-6304-01 19 7976184 7976184 G A MAP2K7 Missense_Mutation p.R302Q 0.17 deleterious(0) probably_damaging(0.987) TCGA-G4-6304-01 19 8032529 8032529 G A ELAVL1 Silent p.N192N 0.14 TCGA-G4-6304-01 19 8130966 8130966 C T FBN3 Missense_Mutation p.R2756H 0.11 tolerated(0.36) benign(0.001) TCGA-G4-6304-01 19 855631 855631 T C ELANE Missense_Mutation p.L145P 0.19 deleterious(0.04) benign(0.076) TCGA-G4-6304-01 19 9087088 9087088 G T MUC16 Missense_Mutation p.S1576Y 0.16 unknown(0) TCGA-G4-6304-01 19 9089883 9089883 C T MUC16 Silent p.T644T 0.14 TCGA-G4-6304-01 1 103488405 103488405 C T COL11A1 Missense_Mutation p.E380K 0.08 probably_damaging(0.914) TCGA-G4-6304-01 1 108313316 108313316 A G VAV3 Missense_Mutation p.L197P 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 1 109793265 109793265 C A CELSR2 Silent p.A188A 0.08 TCGA-G4-6304-01 1 110460011 110460011 G A CSF1 Missense_Mutation p.A108T 0.14 tolerated(0.23) possibly_damaging(0.605) TCGA-G4-6304-01 1 110765992 110765992 G A KCNC4 Missense_Mutation p.R362H 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-G4-6304-01 1 11177061 11177061 C A MTOR Missense_Mutation p.R2339I 0.08 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 1 113212690 113212690 G A CAPZA1 Missense_Mutation p.R266H 0.07 tolerated(0.06) benign(0.142) TCGA-G4-6304-01 1 117150604 117150604 G T IGSF3 Missense_Mutation p.S394R 0.17 tolerated(0.06) possibly_damaging(0.821) TCGA-G4-6304-01 1 119925636 119925636 C T HAO2 Missense_Mutation p.P77L 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 1 1290256 1290256 C T MXRA8 Missense_Mutation p.R252H 0.15 tolerated(0.6) probably_damaging(0.916) TCGA-G4-6304-01 1 1330799 1330799 C T CCNL2 Missense_Mutation p.C190Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 1 145556615 145556615 C T ANKRD35 Missense_Mutation p.A62V 0.17 deleterious(0) possibly_damaging(0.787) TCGA-G4-6304-01 1 1471056 1471056 G A TMEM240 Silent p.L96L 0.22 TCGA-G4-6304-01 1 150528696 150528696 G A ADAMTSL4 Missense_Mutation p.C477Y 0.17 deleterious(0) probably_damaging(0.993) TCGA-G4-6304-01 1 151774033 151774033 G - LINGO4 Frame_Shift_Del p.P383Lfs*14 0.25 TCGA-G4-6304-01 1 152191467 152191467 G A HRNR Missense_Mutation p.R880C 0.12 unknown(0) TCGA-G4-6304-01 1 152328240 152328240 G A FLG2 Silent p.G674G 0.09 TCGA-G4-6304-01 1 154144781 154144781 A G TPM3 Intron 0.08 TCGA-G4-6304-01 1 154841858 154841858 G A KCNN3 Missense_Mutation p.R195W 0.12 deleterious(0) probably_damaging(0.994) TCGA-G4-6304-01 1 154965500 154965500 A G FLAD1 Missense_Mutation p.N584S 0.16 tolerated(0.71) benign(0.007) TCGA-G4-6304-01 1 155187320 155187320 C A MTX1 3'Flank 0.11 TCGA-G4-6304-01 1 155429657 155429657 G A ASH1L Missense_Mutation p.R1673W 0.10 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-G4-6304-01 1 155948168 155948168 C T ARHGEF2 Silent p.E17E 0.10 TCGA-G4-6304-01 1 156255378 156255378 C T TMEM79 Silent p.L121L 0.12 TCGA-G4-6304-01 1 156628411 156628412 TG - BCAN Frame_Shift_Del p.V839Afs*170 0.11 TCGA-G4-6304-01 1 156703977 156703979 CTC - RRNAD1 In_Frame_Del p.S272del 0.16 TCGA-G4-6304-01 1 156823957 156823957 C T INSRR Missense_Mutation p.R75H 0.14 tolerated(0.09) benign(0.01) TCGA-G4-6304-01 1 158637663 158637663 C A SPTA1 Missense_Mutation p.A675S 0.12 tolerated(0.15) benign(0.084) TCGA-G4-6304-01 1 159002361 159002361 G C IFI16 Missense_Mutation p.K403N 0.13 tolerated(0.11) possibly_damaging(0.888) TCGA-G4-6304-01 1 159832400 159832400 A G VSIG8 5'UTR 0.15 TCGA-G4-6304-01 1 161180633 161180633 C T NDUFS2 Intron 0.10 TCGA-G4-6304-01 1 161695890 161695890 A G FCRLB Intron 0.08 TCGA-G4-6304-01 1 162344381 162344381 G A C1orf111 Silent p.H81H 0.11 TCGA-G4-6304-01 1 16263753 16263753 C T SPEN Silent p.L3374L 0.09 TCGA-G4-6304-01 1 165513683 165513683 C T LRRC52 Silent p.D50D 0.17 TCGA-G4-6304-01 1 1685601 1685601 C T NADK Silent p.A475A 0.21 TCGA-G4-6304-01 1 170521480 170521480 T C GORAB Silent p.C354C 0.16 TCGA-G4-6304-01 1 171560900 171560900 C - PRRC2C Frame_Shift_Del p.P2791Lfs*5 0.09 TCGA-G4-6304-01 1 17274917 17274917 G A CROCC Missense_Mutation p.R869H 0.27 probably_damaging(0.967) TCGA-G4-6304-01 1 173551115 173551115 T C SLC9C2 Missense_Mutation p.I225V 0.11 tolerated(0.19) benign(0.083) TCGA-G4-6304-01 1 17749313 17749313 C T RCC2 Silent p.Q181Q 0.20 TCGA-G4-6304-01 1 179090775 179090775 G A ABL2 Silent p.G305G 0.07 TCGA-G4-6304-01 1 180235565 180235566 - C LHX4 Frame_Shift_Ins p.T99Nfs*54 0.09 TCGA-G4-6304-01 1 182555660 182555660 C T RNASEL Silent p.T94T 0.10 TCGA-G4-6304-01 1 185108579 185108579 C T TRMT1L Silent p.R414R 0.16 TCGA-G4-6304-01 1 192127695 192127695 G T RGS18 5'UTR 0.11 TCGA-G4-6304-01 1 19478817 19478817 G A UBR4 Missense_Mutation p.A2329V 0.17 possibly_damaging(0.63) TCGA-G4-6304-01 1 196227490 196227490 C T KCNT2 Missense_Mutation p.M1015I 0.12 tolerated_low_confidence(0.06) possibly_damaging(0.548) TCGA-G4-6304-01 1 200090050 200090050 G A NR5A2 Missense_Mutation p.V449I 0.11 tolerated(0.19) benign(0.169) TCGA-G4-6304-01 1 200709016 200709016 C T CAMSAP2 Missense_Mutation p.P21S 0.14 tolerated(0.81) benign(0.021) TCGA-G4-6304-01 1 201046206 201046206 G A CACNA1S Missense_Mutation p.R557C 0.07 deleterious(0) probably_damaging(0.971) TCGA-G4-6304-01 1 201333443 201333443 G A TNNT2 Missense_Mutation p.R148W 0.15 deleterious(0) probably_damaging(0.979) TCGA-G4-6304-01 1 203036881 203036881 C T PPFIA4 Silent p.L531L 0.13 TCGA-G4-6304-01 1 204085745 204085745 G A SOX13 Missense_Mutation p.A177T 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6304-01 1 204091484 204091484 C - SOX13 Frame_Shift_Del p.T329Rfs*77 0.21 TCGA-G4-6304-01 1 204093966 204093966 C T SOX13 Missense_Mutation p.R525C 0.08 deleterious(0) probably_damaging(0.995) TCGA-G4-6304-01 1 205819186 205819186 G A PM20D1 Silent p.C5C 0.10 TCGA-G4-6304-01 1 206757865 206757865 C A RASSF5 Silent p.S279S 0.13 TCGA-G4-6304-01 1 207235390 207235390 C T PFKFB2 Missense_Mutation p.R60C 0.13 probably_damaging(1) TCGA-G4-6304-01 1 207297603 207297603 A G C4BPA Missense_Mutation p.T200A 0.09 deleterious(0.02) probably_damaging(0.974) TCGA-G4-6304-01 1 207868072 207868072 C T CR1L Missense_Mutation p.P280S 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 1 208215602 208215602 C T PLXNA2 Missense_Mutation p.R1376H 0.15 deleterious(0) probably_damaging(0.994) TCGA-G4-6304-01 1 210024632 210024632 T C DIEXF Missense_Mutation p.L704P 0.08 deleterious(0) possibly_damaging(0.854) TCGA-G4-6304-01 1 210857413 210857413 G A KCNH1 Missense_Mutation p.A727V 0.37 tolerated(0.53) benign(0.002) TCGA-G4-6304-01 1 212274284 212274284 G A DTL Missense_Mutation p.G651D 0.09 tolerated(1) benign(0.013) TCGA-G4-6304-01 1 223401040 223401040 C T SUSD4 Silent p.T319T 0.10 TCGA-G4-6304-01 1 225270425 225270425 A C DNAH14 Missense_Mutation p.N182T 0.07 tolerated(0.46) benign(0.073) TCGA-G4-6304-01 1 227935744 227935744 C T SNAP47 Silent p.L148L 0.13 TCGA-G4-6304-01 1 228401966 228401966 C T OBSCN Silent p.P450P 0.17 TCGA-G4-6304-01 1 228462439 228462439 C T OBSCN Silent p.G2325G 0.17 TCGA-G4-6304-01 1 228467605 228467605 C T OBSCN Missense_Mutation p.P2923S 0.13 probably_damaging(0.999) TCGA-G4-6304-01 1 228471373 228471373 C T OBSCN Silent p.T3398T 0.18 TCGA-G4-6304-01 1 230472988 230472988 G A PGBD5 Missense_Mutation p.A245V 0.15 tolerated(0.06) benign(0.419) TCGA-G4-6304-01 1 236754235 236754235 G A HEATR1 Missense_Mutation p.T481I 0.07 deleterious(0) possibly_damaging(0.77) TCGA-G4-6304-01 1 237754112 237754112 T - RYR2 Frame_Shift_Del p.F1328Lfs*19 0.12 TCGA-G4-6304-01 1 240408788 240408788 C T FMN2 Intron 0.13 TCGA-G4-6304-01 1 246518363 246518363 G A SMYD3 Silent p.R66R 0.11 TCGA-G4-6304-01 1 248551599 248551599 G A OR2T6 Silent p.S230S 0.15 TCGA-G4-6304-01 1 248685339 248685339 G A OR2G6 Missense_Mutation p.R131H 0.10 tolerated(1) benign(0) TCGA-G4-6304-01 1 27058092 27058092 G A ARID1A Silent p.P600P 0.15 TCGA-G4-6304-01 1 27673946 27673946 C A SYTL1 Missense_Mutation p.L76M 0.07 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 1 27875710 27875710 C A AHDC1 Missense_Mutation p.G973C 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-G4-6304-01 1 28559490 28559490 C T DNAJC8 Missense_Mutation p.S7N 0.15 tolerated(0.17) unknown(0) TCGA-G4-6304-01 1 28657194 28657194 C T MED18 Silent p.T7T 0.13 TCGA-G4-6304-01 1 28920547 28920547 G - RAB42 Frame_Shift_Del p.G81Vfs*119 0.24 TCGA-G4-6304-01 1 29609287 29609287 G A PTPRU Silent p.A656A 0.09 TCGA-G4-6304-01 1 32384624 32384624 G A PTP4A2 Missense_Mutation p.R15C 0.13 deleterious(0.01) possibly_damaging(0.735) TCGA-G4-6304-01 1 32673683 32673683 G A IQCC Silent p.%3D 0.07 TCGA-G4-6304-01 1 3380096 3380096 C T ARHGEF16 Missense_Mutation p.R150W 0.14 deleterious(0) probably_damaging(0.988) TCGA-G4-6304-01 1 34663101 34663101 A G C1orf94 Missense_Mutation p.D199G 0.17 tolerated(0.17) possibly_damaging(0.846) TCGA-G4-6304-01 1 36637167 36637167 C T MAP7D1 Missense_Mutation p.R149W 0.07 probably_damaging(0.998) TCGA-G4-6304-01 1 36786249 36786249 C T SH3D21 Missense_Mutation p.P662L 0.14 tolerated(0.41) benign(0.016) TCGA-G4-6304-01 1 41237180 41237180 C T NFYC 3'Flank 0.20 TCGA-G4-6304-01 1 41475864 41475865 - C CTPS1 Frame_Shift_Ins p.D577* 0.09 TCGA-G4-6304-01 1 43166687 43166687 A G YBX1 3'UTR 0.14 TCGA-G4-6304-01 1 43812607 43812607 T C MPL Splice_Site p.X436_splice 0.16 TCGA-G4-6304-01 1 43830017 43830017 T - ELOVL1 Frame_Shift_Del p.K199Sfs*3 0.10 TCGA-G4-6304-01 1 43852634 43852634 A G MED8 Silent p.H102H 0.10 TCGA-G4-6304-01 1 46089105 46089105 A G CCDC17 Missense_Mutation p.W93R 0.10 tolerated(0.91) benign(0.002) TCGA-G4-6304-01 1 46685521 46685521 G A LURAP1 Missense_Mutation p.G117R 0.12 tolerated(0.06) probably_damaging(1) TCGA-G4-6304-01 1 52253603 52253603 C T OSBPL9 3'UTR 0.22 TCGA-G4-6304-01 1 53322817 53322817 T C ZYG11A Missense_Mutation p.V135A 0.17 tolerated(0.1) benign(0.22) TCGA-G4-6304-01 1 55161142 55161142 G A MROH7 Silent p.T981T 0.06 TCGA-G4-6304-01 1 55168349 55168349 A - MROH7 Frame_Shift_Del p.R1167Efs*23 0.09 TCGA-G4-6304-01 1 57173254 57173254 C T PRKAA2 Silent p.S509S 0.14 TCGA-G4-6304-01 1 57254667 57254667 C T C1orf168 Missense_Mutation p.V300I 0.11 tolerated(0.52) benign(0.034) TCGA-G4-6304-01 1 62240964 62240964 C T INADL Silent p.G269G 0.12 TCGA-G4-6304-01 1 62672750 62672750 C T L1TD1 Silent p.N150N 0.11 TCGA-G4-6304-01 1 63005491 63005491 G A DOCK7 Missense_Mutation p.R1009C 0.07 deleterious(0) probably_damaging(0.961) TCGA-G4-6304-01 1 6313865 6313865 C T GPR153 Silent p.S233S 0.15 TCGA-G4-6304-01 1 65871634 65871634 C T DNAJC6 Missense_Mutation p.A770V 0.15 tolerated(0.1) benign(0.242) TCGA-G4-6304-01 1 6631267 6631267 G A TAS1R1 Missense_Mutation p.V164M 0.35 tolerated(0.27) benign(0.221) TCGA-G4-6304-01 1 66999975 66999975 A G SGIP1 5'UTR 0.08 TCGA-G4-6304-01 1 67288097 67288097 G A WDR78 Nonsense_Mutation p.Q815* 0.13 TCGA-G4-6304-01 1 67306261 67306261 T A WDR78 Missense_Mutation p.H462L 0.13 tolerated(0.29) benign(0.001) TCGA-G4-6304-01 1 68649222 68649222 G A WLS Intron 0.07 TCGA-G4-6304-01 1 72241942 72241942 C T NEGR1 Missense_Mutation p.V150I 0.08 tolerated(0.17) benign(0.257) TCGA-G4-6304-01 1 74665486 74665486 T - FPGT-TNNI3K Frame_Shift_Del p.F88Lfs*37 0.10 TCGA-G4-6304-01 1 762861 762861 C A LINC00115 RNA 0.16 TCGA-G4-6304-01 1 77759477 77759477 G A AK5 Splice_Site p.X83_splice 0.09 TCGA-G4-6304-01 1 78024331 78024331 C T AK5 Silent p.C555C 0.07 TCGA-G4-6304-01 1 78177378 78177378 T C USP33 Intron 0.07 TCGA-G4-6304-01 1 78585171 78585171 C A GIPC2 Silent p.T234T 0.18 TCGA-G4-6304-01 1 84417927 84417927 C T TTLL7 5'UTR 0.17 TCGA-G4-6304-01 1 86817861 86817861 A - ODF2L 3'UTR 0.13 TCGA-G4-6304-01 1 89271571 89271571 A G PKN2 Intron 0.06 TCGA-G4-6304-01 1 89414852 89414852 G A CCBL2 Missense_Mutation p.R355C 0.09 deleterious(0.03) benign(0.002) TCGA-G4-6304-01 1 94490535 94490535 T - ABCA4 Frame_Shift_Del p.T1537Rfs*6 0.09 TCGA-G4-6304-01 1 9779996 9779996 G T PIK3CD Missense_Mutation p.W420C 0.10 deleterious(0) probably_damaging(0.995) TCGA-G4-6304-01 1 99772455 99772455 C T LPPR4 Silent p.T727T 0.16 TCGA-G4-6304-01 20 1291461 1291461 G A SDCBP2 Silent p.Y269Y 0.13 TCGA-G4-6304-01 20 1426448 1426448 G A NSFL1C Silent p.S273S 0.07 TCGA-G4-6304-01 20 19560663 19560663 C T SLC24A3 Missense_Mutation p.A123V 0.12 deleterious(0) probably_damaging(0.998) TCGA-G4-6304-01 20 20392728 20392728 C T RALGAPA2 Missense_Mutation p.E1854K 0.12 deleterious(0) probably_damaging(0.919) TCGA-G4-6304-01 20 2593976 2593976 A G TMC2 Intron 0.17 TCGA-G4-6304-01 20 26061972 26061972 G A FAM182A RNA 0.11 TCGA-G4-6304-01 20 31041556 31041556 G - C20orf112 Frame_Shift_Del p.Y133Tfs*20 0.29 TCGA-G4-6304-01 20 3145661 3145663 CTT - LZTS3 In_Frame_Del p.K487del 0.11 TCGA-G4-6304-01 20 3212030 3212030 C T SLC4A11 Silent p.A341A 0.16 TCGA-G4-6304-01 20 33596482 33596482 G A TRPC4AP Missense_Mutation p.A527V 0.08 tolerated(0.25) benign(0.032) TCGA-G4-6304-01 20 34025504 34025504 C - GDF5 Frame_Shift_Del p.A69Pfs*18 0.14 TCGA-G4-6304-01 20 3641233 3641233 C T GFRA4 Missense_Mutation p.G223R 0.15 deleterious(0) probably_damaging(0.989) TCGA-G4-6304-01 20 3673352 3673352 C T SIGLEC1 Silent p.A1282A 0.15 TCGA-G4-6304-01 20 37126084 37126084 C T RALGAPB Nonsense_Mutation p.R160* 0.07 TCGA-G4-6304-01 20 39832694 39832694 T C ZHX3 Missense_Mutation p.Q288R 0.12 tolerated(0.07) possibly_damaging(0.76) TCGA-G4-6304-01 20 42694667 42694668 - C TOX2 Frame_Shift_Ins p.Q428Pfs*32 0.09 TCGA-G4-6304-01 20 43943059 43943059 C T RBPJL Missense_Mutation p.R292C 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 20 45630112 45630112 G T EYA2 Missense_Mutation p.R52I 0.10 deleterious(0) possibly_damaging(0.715) TCGA-G4-6304-01 20 46386097 46386097 G - SULF2 Frame_Shift_Del p.P4Rfs*28 0.11 TCGA-G4-6304-01 20 47855508 47855508 C T DDX27 Silent p.D601D 0.13 TCGA-G4-6304-01 20 57268948 57268948 C T NPEPL1 Silent p.C102C 0.09 TCGA-G4-6304-01 20 58564072 58564072 C A CDH26 Silent p.A379A 0.11 TCGA-G4-6304-01 20 5921746 5921746 C A TRMT6 Missense_Mutation p.G419W 0.09 deleterious(0) probably_damaging(0.995) TCGA-G4-6304-01 20 61513527 61513527 G A DIDO1 Missense_Mutation p.P1261S 0.12 probably_damaging(0.996) TCGA-G4-6304-01 20 62329703 62329703 G A TNFRSF6B Silent p.Q230Q 0.11 TCGA-G4-6304-01 20 62659037 62659037 C T PRPF6 Missense_Mutation p.R763W 0.11 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 20 62699437 62699437 C T TCEA2 Silent p.G93G 0.10 TCGA-G4-6304-01 20 62904863 62904863 C - PCMTD2 Frame_Shift_Del p.P334Qfs*2 0.12 TCGA-G4-6304-01 20 6759054 6759054 G A BMP2 Missense_Mutation p.R170Q 0.11 deleterious(0.03) probably_damaging(0.979) TCGA-G4-6304-01 20 6759374 6759374 C A BMP2 Missense_Mutation p.H277N 0.14 tolerated(0.5) possibly_damaging(0.838) TCGA-G4-6304-01 21 15748093 15748093 C T HSPA13 Missense_Mutation p.A210T 0.11 deleterious(0) possibly_damaging(0.752) TCGA-G4-6304-01 21 15750529 15750529 T C HSPA13 Missense_Mutation p.N191D 0.12 tolerated(0.44) benign(0.304) TCGA-G4-6304-01 21 27012123 27012123 G A JAM2 5'UTR 0.15 TCGA-G4-6304-01 21 34619103 34619103 G A IFNAR2 Missense_Mutation p.S101N 0.11 tolerated(0.78) benign(0.027) TCGA-G4-6304-01 21 34876494 34876494 C A GART Silent p.L990L 0.09 TCGA-G4-6304-01 21 34883664 34883664 C T GART Missense_Mutation p.A737T 0.07 deleterious(0.04) probably_damaging(0.997) TCGA-G4-6304-01 21 38538069 38538069 A - TTC3 Frame_Shift_Del p.N1186Tfs*6 0.12 TCGA-G4-6304-01 21 38538911 38538911 C A TTC3 Silent p.A1465A 0.07 TCGA-G4-6304-01 21 38563723 38563723 A G TTC3 Missense_Mutation p.K1705E 0.06 tolerated(1) benign(0.004) TCGA-G4-6304-01 21 44433235 44433235 G A PKNOX1 Missense_Mutation p.E137K 0.10 deleterious(0) benign(0.16) TCGA-G4-6304-01 21 44483167 44483167 C A CBS Missense_Mutation p.G284W 0.12 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 21 44840949 44840949 G A SIK1 Missense_Mutation p.P230L 0.15 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 21 45655225 45655225 G - ICOSLG Frame_Shift_Del p.S210Afs*2 0.12 TCGA-G4-6304-01 21 46285327 46285327 A G PTTG1IP Missense_Mutation p.C51R 0.14 deleterious(0) possibly_damaging(0.748) TCGA-G4-6304-01 21 46330647 46330647 G A ITGB2 Silent p.L17L 0.09 TCGA-G4-6304-01 21 46897384 46897384 G - COL18A1 Frame_Shift_Del p.G511Afs*3 0.11 TCGA-G4-6304-01 21 46925316 46925316 C - COL18A1 Frame_Shift_Del p.P1201Lfs*10 0.16 TCGA-G4-6304-01 21 47539020 47539020 C T COL6A2 Missense_Mutation p.P419L 0.12 tolerated(0.06) benign(0.366) TCGA-G4-6304-01 21 47545719 47545719 C T COL6A2 Nonsense_Mutation p.Q664* 0.18 TCGA-G4-6304-01 21 47841957 47841957 G A PCNT Silent p.V2366V 0.13 TCGA-G4-6304-01 21 47851853 47851853 G T PCNT Missense_Mutation p.E2825D 0.24 possibly_damaging(0.636) TCGA-G4-6304-01 21 47929288 47929288 A G DIP2A Silent p.E301E 0.23 TCGA-G4-6304-01 22 17072357 17072357 C T CCT8L2 Missense_Mutation p.V362I 0.16 tolerated(0.1) benign(0.432) TCGA-G4-6304-01 22 17072882 17072882 C T CCT8L2 Missense_Mutation p.A187T 0.10 deleterious(0) possibly_damaging(0.889) TCGA-G4-6304-01 22 19026418 19026418 C - DGCR2 Frame_Shift_Del p.G538Vfs*111 0.12 TCGA-G4-6304-01 22 19163633 19163633 C A SLC25A1 3'UTR 0.14 TCGA-G4-6304-01 22 21288098 21288098 G A CRKL Missense_Mutation p.A115T 0.08 tolerated(0.32) benign(0.003) TCGA-G4-6304-01 22 21333838 21333838 G A AIFM3 Intron 0.19 TCGA-G4-6304-01 22 22293881 22293881 A G PPM1F Intron 0.14 TCGA-G4-6304-01 22 23264923 23264923 G T IGLC7 Silent p.V53V 0.06 TCGA-G4-6304-01 22 23974151 23974151 G A C22orf43 Silent p.D20D 0.13 TCGA-G4-6304-01 22 24629859 24629859 A C GGT5 Missense_Mutation p.I96S 0.10 deleterious(0) possibly_damaging(0.759) TCGA-G4-6304-01 22 24919670 24919670 C T UPB1 Missense_Mutation p.R334W 0.15 deleterious(0) possibly_damaging(0.485) TCGA-G4-6304-01 22 26422689 26422689 T G MYO18B Missense_Mutation p.L2250R 0.12 deleterious(0) probably_damaging(0.988) TCGA-G4-6304-01 22 29454859 29454859 C T C22orf31 Nonsense_Mutation p.W248* 0.12 TCGA-G4-6304-01 22 31485922 31485922 C - SMTN Frame_Shift_Del p.S239Afs*118 0.19 TCGA-G4-6304-01 22 31489785 31489785 G A SMTN Intron 0.24 TCGA-G4-6304-01 22 36960726 36960726 G A CACNG2 Missense_Mutation p.T215M 0.08 deleterious(0.02) benign(0.201) TCGA-G4-6304-01 22 38611590 38611590 G T MAFF 3'UTR 0.11 TCGA-G4-6304-01 22 39441444 39441444 T C APOBEC3F Missense_Mutation p.C155R 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 22 39496301 39496301 C T APOBEC3H Silent p.A6A 0.15 TCGA-G4-6304-01 22 39529825 39529825 C T CBX7 3'UTR 0.14 TCGA-G4-6304-01 22 40366958 40366958 A G GRAP2 Missense_Mutation p.D288G 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 22 40657877 40657877 G A TNRC6B Missense_Mutation p.A53T 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6304-01 22 43576893 43576893 T C TTLL12 Missense_Mutation p.Q134R 0.16 deleterious(0.02) probably_damaging(0.923) TCGA-G4-6304-01 22 43658796 43658796 C T SCUBE1 Silent p.T180T 0.20 TCGA-G4-6304-01 22 43898564 43898564 C T MPPED1 Silent p.G263G 0.10 TCGA-G4-6304-01 22 43936099 43936099 T C EFCAB6 Missense_Mutation p.S1263G 0.15 deleterious(0.01) possibly_damaging(0.534) TCGA-G4-6304-01 22 46653646 46653646 A G PKDREJ Silent p.Y1858Y 0.13 TCGA-G4-6304-01 22 46654954 46654954 T G PKDREJ Missense_Mutation p.K1422N 0.08 tolerated(0.05) benign(0.156) TCGA-G4-6304-01 22 46794520 46794520 G A CELSR1 Silent p.I1809I 0.13 TCGA-G4-6304-01 2 101885690 101885690 C T CNOT11 Missense_Mutation p.R450C 0.12 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 2 103068501 103068501 A - IL18RAP Frame_Shift_Del p.M555Cfs*7 0.08 TCGA-G4-6304-01 2 106761735 106761735 G A UXS1 Missense_Mutation p.T128M 0.09 deleterious(0.03) possibly_damaging(0.576) TCGA-G4-6304-01 2 109099524 109099524 G A GCC2 Missense_Mutation p.A1118T 0.07 tolerated(0.21) benign(0.002) TCGA-G4-6304-01 2 112545840 112545840 C T ANAPC1 Silent p.P1590P 0.09 TCGA-G4-6304-01 2 112824590 112824590 A - TMEM87B Frame_Shift_Del p.N134Mfs*4 0.14 TCGA-G4-6304-01 2 113343923 113343923 G A CHCHD5 Missense_Mutation p.R97H 0.11 tolerated(0.37) benign(0.001) TCGA-G4-6304-01 2 11375874 11375874 C T ROCK2 Missense_Mutation p.G226E 0.06 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 2 120005381 120005381 C T STEAP3 Missense_Mutation p.R217C 0.24 deleterious(0.04) benign(0.034) TCGA-G4-6304-01 2 120362263 120362263 A C PCDP1 Missense_Mutation p.E269D 0.12 tolerated(0.25) benign(0.034) TCGA-G4-6304-01 2 1241682 1241682 G A SNTG2 Missense_Mutation p.A248T 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-G4-6304-01 2 128461994 128461994 A - WDR33 3'UTR 0.10 TCGA-G4-6304-01 2 128757352 128757352 G A SAP130 Silent p.S418S 0.10 TCGA-G4-6304-01 2 130843487 130843487 C T POTEF Missense_Mutation p.A560T 0.11 deleterious_low_confidence(0) benign(0.094) TCGA-G4-6304-01 2 130922012 130922013 - A SMPD4 Frame_Shift_Ins p.V306Cfs*2 0.09 TCGA-G4-6304-01 2 136548388 136548388 C T LCT Silent p.T1725T 0.11 TCGA-G4-6304-01 2 136575110 136575110 G A LCT Missense_Mutation p.A503V 0.08 tolerated(0.11) possibly_damaging(0.483) TCGA-G4-6304-01 2 141108399 141108399 G A LRP1B Silent p.G3953G 0.11 TCGA-G4-6304-01 2 149216414 149216414 G T MBD5 Silent p.V29V 0.13 TCGA-G4-6304-01 2 152521901 152521901 G A NEB Silent p.A1728A 0.12 TCGA-G4-6304-01 2 152698528 152698528 C T CACNB4 Silent p.A397A 0.08 TCGA-G4-6304-01 2 15468328 15468328 C T NBAS Missense_Mutation p.A1486T 0.09 tolerated(0.76) benign(0) TCGA-G4-6304-01 2 154996992 154996992 A T GALNT13 Missense_Mutation p.R95S 0.12 deleterious(0.02) possibly_damaging(0.476) TCGA-G4-6304-01 2 157426047 157426047 C T GPD2 Silent p.S491S 0.09 TCGA-G4-6304-01 2 160087611 160087611 T - TANC1 3'UTR 0.15 TCGA-G4-6304-01 2 1665927 1665927 C T PXDN Missense_Mutation p.D533N 0.12 tolerated(0.15) probably_damaging(0.999) TCGA-G4-6304-01 2 170145577 170145577 G - LRP2 Frame_Shift_Del p.P334Qfs*72 0.26 TCGA-G4-6304-01 2 170151179 170151179 A G LRP2 Missense_Mutation p.C157R 0.09 probably_damaging(0.999) TCGA-G4-6304-01 2 170761745 170761746 - T UBR3 Frame_Shift_Ins p.L531Ffs*34 0.11 TCGA-G4-6304-01 2 173292558 173292558 G A ITGA6 Silent p.A14A 0.09 TCGA-G4-6304-01 2 175742714 175742714 C T CHN1 Missense_Mutation p.A135T 0.11 tolerated(0.32) benign(0.089) TCGA-G4-6304-01 2 17698736 17698737 - T RAD51AP2 Frame_Shift_Ins p.T316Nfs*13 0.13 TCGA-G4-6304-01 2 179397705 179397705 C T TTN Missense_Mutation p.R34546H 0.07 TCGA-G4-6304-01 2 179404547 179404547 C T TTN Missense_Mutation p.A32749T 0.08 TCGA-G4-6304-01 2 179479086 179479086 C T TTN Intron 0.10 TCGA-G4-6304-01 2 179479649 179479649 C T TTN Missense_Mutation p.V16229M 0.10 TCGA-G4-6304-01 2 179526509 179526509 T - TTN Frame_Shift_Del p.K12421Sfs*526 0.18 TCGA-G4-6304-01 2 179576715 179576715 T - TTN Frame_Shift_Del p.N9281Tfs*27 0.09 TCGA-G4-6304-01 2 179594511 179594511 T C TTN Missense_Mutation p.I6157V 0.12 TCGA-G4-6304-01 2 179730513 179730513 A T CCDC141 Missense_Mutation p.M902K 0.14 tolerated(0.08) benign(0.002) TCGA-G4-6304-01 2 179979984 179979984 C G SESTD1 Splice_Site p.X550_splice 0.16 TCGA-G4-6304-01 2 18113966 18113967 - AG KCNS3 3'UTR 0.10 TCGA-G4-6304-01 2 189452678 189452678 T C GULP1 Splice_Site p.X281_splice 0.10 TCGA-G4-6304-01 2 1921020 1921020 G A MYT1L Silent p.R523R 0.11 TCGA-G4-6304-01 2 196699010 196699010 G A DNAH7 Missense_Mutation p.A3007V 0.11 tolerated(0.26) benign(0.008) TCGA-G4-6304-01 2 197784731 197784731 A T PGAP1 Missense_Mutation p.S97R 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 2 198273288 198273288 T G SF3B1 Missense_Mutation p.S308R 0.19 tolerated(0.06) possibly_damaging(0.821) TCGA-G4-6304-01 2 201437851 201437851 G T SGOL2 Missense_Mutation p.D928Y 0.12 deleterious(0) possibly_damaging(0.813) TCGA-G4-6304-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.19 TCGA-G4-6304-01 2 20840505 20840505 C A HS1BP3 Intron 0.08 TCGA-G4-6304-01 2 208986443 208986443 G A CRYGD Missense_Mutation p.T160M 0.15 tolerated(0.65) benign(0.003) TCGA-G4-6304-01 2 209010539 209010539 C A CRYGB Missense_Mutation p.G71C 0.19 deleterious(0.01) probably_damaging(1) TCGA-G4-6304-01 2 210683965 210683965 A G UNC80 Missense_Mutation p.N648D 0.10 probably_damaging(0.953) TCGA-G4-6304-01 2 215819992 215819992 A - ABCA12 Frame_Shift_Del p.F2109Lfs*25 0.11 TCGA-G4-6304-01 2 216877977 216877977 G T MREG Missense_Mutation p.P25H 0.07 deleterious(0.04) benign(0.366) TCGA-G4-6304-01 2 218939912 218939912 C T RUFY4 Silent p.L253L 0.17 TCGA-G4-6304-01 2 222347370 222347370 G A EPHA4 Silent p.N340N 0.09 TCGA-G4-6304-01 2 224463752 224463752 A G SCG2 Silent p.G83G 0.14 TCGA-G4-6304-01 2 224743435 224743435 T G WDFY1 Missense_Mutation p.T396P 0.10 deleterious(0.02) benign(0.439) TCGA-G4-6304-01 2 228195440 228195440 G A MFF Missense_Mutation p.R46Q 0.06 tolerated(0.13) benign(0.034) TCGA-G4-6304-01 2 230683117 230683117 A G TRIP12 Missense_Mutation p.L473P 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 2 230911162 230911162 C T SLC16A14 Missense_Mutation p.R227H 0.14 tolerated(0.18) benign(0.002) TCGA-G4-6304-01 2 231742190 231742190 G A ITM2C Missense_Mutation p.A213T 0.10 tolerated(0.18) benign(0.023) TCGA-G4-6304-01 2 237327821 237327822 - T IQCA1 Frame_Shift_Ins p.Q369Tfs*10 0.13 TCGA-G4-6304-01 2 239307624 239307624 T C TRAF3IP1 3'UTR 0.10 TCGA-G4-6304-01 2 241530424 241530424 G T CAPN10 Missense_Mutation p.A156S 0.18 deleterious(0.02) probably_damaging(0.949) TCGA-G4-6304-01 2 241536158 241536158 G T CAPN10 Missense_Mutation p.W514C 0.20 deleterious(0) probably_damaging(0.995) TCGA-G4-6304-01 2 241631442 241631442 G A AQP12A Missense_Mutation p.A38T 0.08 deleterious(0.05) benign(0.166) TCGA-G4-6304-01 2 241657486 241657486 G - KIF1A Frame_Shift_Del p.L1772Sfs*117 0.09 TCGA-G4-6304-01 2 24199877 24199877 C T UBXN2A Silent p.T73T 0.17 TCGA-G4-6304-01 2 242046116 242046116 C T PASK Silent p.A1286A 0.08 TCGA-G4-6304-01 2 242695329 242695329 C T D2HGDH Silent p.Y402Y 0.09 TCGA-G4-6304-01 2 26204016 26204016 G A KIF3C Silent p.G257G 0.11 TCGA-G4-6304-01 2 27320380 27320380 G A KHK Missense_Mutation p.A143T 0.15 tolerated(0.28) benign(0.006) TCGA-G4-6304-01 2 27665332 27665332 G A KRTCAP3 Intron 0.13 TCGA-G4-6304-01 2 27805918 27805918 C T ZNF512 5'UTR 0.07 TCGA-G4-6304-01 2 29246034 29246034 G A FAM179A Missense_Mutation p.V532M 0.18 deleterious(0) probably_damaging(0.966) TCGA-G4-6304-01 2 30142952 30142952 C T ALK Missense_Mutation p.E192K 0.11 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-G4-6304-01 2 31133839 31133839 G A GALNT14 Silent p.N534N 0.13 TCGA-G4-6304-01 2 31484537 31484537 C T EHD3 Silent p.H346H 0.09 TCGA-G4-6304-01 2 32605255 32605255 T C BIRC6 Missense_Mutation p.V181A 0.10 benign(0.049) TCGA-G4-6304-01 2 33952888 33952888 C T AC009499.1 Intron 0.14 TCGA-G4-6304-01 2 37513509 37513509 G A PRKD3 Missense_Mutation p.H241Y 0.10 tolerated(1) benign(0) TCGA-G4-6304-01 2 39156956 39156956 G A ARHGEF33 Missense_Mutation p.R116Q 0.07 tolerated(0.09) possibly_damaging(0.657) TCGA-G4-6304-01 2 45235704 45235704 G A SIX2 Silent p.A182A 0.13 TCGA-G4-6304-01 2 46985800 46985800 A G SOCS5 Missense_Mutation p.N44S 0.13 tolerated_low_confidence(0.99) benign(0) TCGA-G4-6304-01 2 48059922 48059922 C T FBXO11 Missense_Mutation p.R380Q 0.10 tolerated(0.16) possibly_damaging(0.769) TCGA-G4-6304-01 2 48063108 48063108 G A FBXO11 Missense_Mutation p.T207I 0.12 tolerated(0.1) benign(0.403) TCGA-G4-6304-01 2 54849492 54849492 C T SPTBN1 Missense_Mutation p.A311V 0.17 deleterious(0) probably_damaging(0.934) TCGA-G4-6304-01 2 60687828 60687828 C T BCL11A Missense_Mutation p.R740H 0.07 deleterious(0) possibly_damaging(0.891) TCGA-G4-6304-01 2 62110660 62110660 T C CCT4 Silent p.V68V 0.15 TCGA-G4-6304-01 2 73653609 73653609 C T ALMS1 Silent p.D422D 0.11 TCGA-G4-6304-01 2 74462332 74462332 G T SLC4A5 Missense_Mutation p.L777M 0.20 tolerated(0.14) probably_damaging(0.962) TCGA-G4-6304-01 2 80529570 80529570 G C LRRTM1 Missense_Mutation p.Q459E 0.11 deleterious(0.01) benign(0.04) TCGA-G4-6304-01 2 96943312 96943312 A C SNRNP200 Missense_Mutation p.F1966V 0.16 tolerated(0.08) probably_damaging(0.927) TCGA-G4-6304-01 2 96952206 96952206 C T SNRNP200 Silent p.L1282L 0.17 TCGA-G4-6304-01 2 99725895 99725895 C T TSGA10 Missense_Mutation p.R3Q 0.15 tolerated(0.08) possibly_damaging(0.519) TCGA-G4-6304-01 3 100096714 100096714 G C TOMM70A Missense_Mutation p.N309K 0.11 tolerated(0.62) benign(0.012) TCGA-G4-6304-01 3 101083753 101083753 C A SENP7 Missense_Mutation p.E467D 0.07 tolerated(0.2) benign(0.005) TCGA-G4-6304-01 3 10132030 10132031 - A FANCD2 Frame_Shift_Ins p.I1249Nfs*2 0.10 TCGA-G4-6304-01 3 101404738 101404738 G A RPL24 Missense_Mutation p.A39V 0.07 tolerated(0.14) possibly_damaging(0.864) TCGA-G4-6304-01 3 10967711 10967711 C T SLC6A11 Missense_Mutation p.A381V 0.11 tolerated(0.14) probably_damaging(0.999) TCGA-G4-6304-01 3 111603771 111603771 C T PHLDB2 Nonsense_Mutation p.R283* 0.10 TCGA-G4-6304-01 3 111899420 111899420 G T SLC9C1 Silent p.G913G 0.07 TCGA-G4-6304-01 3 11303646 11303646 G T HRH1 3'UTR 0.15 TCGA-G4-6304-01 3 113135378 113135378 G T WDR52 Missense_Mutation p.L223I 0.13 deleterious(0) probably_damaging(0.992) TCGA-G4-6304-01 3 118623521 118623521 T C IGSF11 Silent p.E276E 0.08 TCGA-G4-6304-01 3 122003569 122003569 C T CASR Missense_Mutation p.P933L 0.10 tolerated_low_confidence(0.05) benign(0.125) TCGA-G4-6304-01 3 122186209 122186209 C T KPNA1 Missense_Mutation p.G66D 0.13 tolerated(0.69) benign(0.143) TCGA-G4-6304-01 3 122288682 122288682 C T DTX3L Silent p.C582C 0.10 TCGA-G4-6304-01 3 122418767 122418767 A T PARP14 Missense_Mutation p.T456S 0.10 tolerated(0.17) possibly_damaging(0.637) TCGA-G4-6304-01 3 12623843 12623843 T C MKRN2 3'UTR 0.27 TCGA-G4-6304-01 3 128182717 128182717 T - DNAJB8 5'UTR 0.18 TCGA-G4-6304-01 3 128877370 128877370 A G ISY1 Missense_Mutation p.L20P 0.10 tolerated(0.23) possibly_damaging(0.844) TCGA-G4-6304-01 3 12949995 12949995 C A IQSEC1 Missense_Mutation p.R884L 0.16 deleterious(0) possibly_damaging(0.667) TCGA-G4-6304-01 3 132203429 132203429 T C DNAJC13 Intron 0.14 TCGA-G4-6304-01 3 132244492 132244492 T C DNAJC13 Silent p.C2033C 0.23 TCGA-G4-6304-01 3 133118881 133118881 C T BFSP2 5'UTR 0.18 TCGA-G4-6304-01 3 13401963 13401963 A G NUP210 Missense_Mutation p.V654A 0.12 deleterious(0) possibly_damaging(0.78) TCGA-G4-6304-01 3 135721936 135721936 G A PPP2R3A Silent p.A532A 0.09 TCGA-G4-6304-01 3 14860975 14860975 A G FGD5 Missense_Mutation p.R133G 0.15 tolerated_low_confidence(0.54) benign(0.001) TCGA-G4-6304-01 3 148927978 148927978 C T CP Missense_Mutation p.G195R 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 3 149619943 149619943 A - RNF13 Frame_Shift_Del p.G168Afs*5 0.14 TCGA-G4-6304-01 3 150877858 150877858 C T MED12L Silent p.P359P 0.08 TCGA-G4-6304-01 3 152883692 152883692 T - RAP2B 3'UTR 0.13 TCGA-G4-6304-01 3 154018783 154018783 G A DHX36 Nonsense_Mutation p.R451* 0.07 TCGA-G4-6304-01 3 15478048 15478048 G A EAF1 Silent p.R242R 0.14 TCGA-G4-6304-01 3 158390320 158390320 G A LXN 5'UTR 0.11 TCGA-G4-6304-01 3 169511661 169511661 A - LRRC34 Intron 0.18 TCGA-G4-6304-01 3 171451243 171451243 A G PLD1 Silent p.Y199Y 0.11 TCGA-G4-6304-01 3 172482096 172482096 T C ECT2 Missense_Mutation p.V366A 0.10 tolerated(0.14) probably_damaging(0.992) TCGA-G4-6304-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.15 deleterious(0.02) probably_damaging(0.959) TCGA-G4-6304-01 3 179051998 179051998 C A ZNF639 Missense_Mutation p.L416I 0.17 tolerated(0.41) probably_damaging(0.967) TCGA-G4-6304-01 3 180370056 180370056 T C CCDC39 Splice_Site p.X311_splice 0.13 TCGA-G4-6304-01 3 182575698 182575698 T C ATP11B Missense_Mutation p.V295A 0.15 deleterious(0.03) benign(0.049) TCGA-G4-6304-01 3 182756918 182756918 C T MCCC1 Missense_Mutation p.E425K 0.12 deleterious(0.01) possibly_damaging(0.871) TCGA-G4-6304-01 3 183956535 183956535 T C VWA5B2 Silent p.P692P 0.08 TCGA-G4-6304-01 3 184005699 184005699 C A ECE2 Missense_Mutation p.F564L 0.17 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 3 184038481 184038481 C T EIF4G1 Missense_Mutation p.R208C 0.13 deleterious(0) possibly_damaging(0.483) TCGA-G4-6304-01 3 18436302 18436302 C T SATB1 Silent p.A286A 0.09 TCGA-G4-6304-01 3 189526115 189526115 G A TP63 Missense_Mutation p.G127S 0.13 tolerated(0.73) benign(0.132) TCGA-G4-6304-01 3 193201724 193201724 C A ATP13A4 Splice_Site p.X270_splice 0.10 TCGA-G4-6304-01 3 20017562 20017562 T A RAB5A Missense_Mutation p.N113K 0.08 tolerated(0.84) benign(0.046) TCGA-G4-6304-01 3 23848905 23848905 G A UBE2E1 Missense_Mutation p.A49T 0.09 tolerated(0.11) benign(0.029) TCGA-G4-6304-01 3 25835644 25835644 G A OXSM Missense_Mutation p.A347T 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6304-01 3 27346387 27346387 T C NEK10 Missense_Mutation p.I293M 0.11 tolerated(0.05) benign(0.1) TCGA-G4-6304-01 3 32806235 32806235 G A CNOT10 Silent p.L706L 0.16 TCGA-G4-6304-01 3 38173446 38173446 G A ACAA1 Missense_Mutation p.S125L 0.10 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 3 38357187 38357188 - C SLC22A14 Frame_Shift_Ins p.T508Hfs*73 0.08 TCGA-G4-6304-01 3 40453412 40453412 C T ENTPD3 Silent p.T132T 0.24 TCGA-G4-6304-01 3 40499433 40499433 C A RPL14 Missense_Mutation p.P19H 0.11 deleterious(0) probably_damaging(0.96) TCGA-G4-6304-01 3 42610508 42610508 G A SEC22C Missense_Mutation p.R11W 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 3 46414624 46414625 - T CCR5 Frame_Shift_Ins p.L80Pfs*47 0.13 TCGA-G4-6304-01 3 48348456 48348456 A G SPINK8 3'UTR 0.10 TCGA-G4-6304-01 3 48520614 48520614 G A SHISA5 Missense_Mutation p.R96C 0.11 deleterious(0.04) probably_damaging(0.91) TCGA-G4-6304-01 3 48610127 48610127 C T COL7A1 Missense_Mutation p.G2293S 0.17 probably_damaging(1) TCGA-G4-6304-01 3 48698250 48698250 T C CELSR3 Silent p.A606A 0.12 TCGA-G4-6304-01 3 49062388 49062388 G A IMPDH2 Silent p.R412R 0.10 TCGA-G4-6304-01 3 49693666 49693666 G T BSN Missense_Mutation p.R2226M 0.08 unknown(0) TCGA-G4-6304-01 3 49848201 49848201 C T UBA7 Missense_Mutation p.R432H 0.10 tolerated(0.47) benign(0.009) TCGA-G4-6304-01 3 50106142 50106142 G A RBM6 Missense_Mutation p.R988Q 0.07 tolerated(0.13) probably_damaging(0.922) TCGA-G4-6304-01 3 50231256 50231256 C T GNAT1 Nonsense_Mutation p.R174* 0.12 TCGA-G4-6304-01 3 50289871 50289871 G A GNAI2 Silent p.Q68Q 0.14 TCGA-G4-6304-01 3 50403088 50403088 T C CACNA2D2 Missense_Mutation p.I990V 0.16 tolerated(0.43) benign(0.003) TCGA-G4-6304-01 3 52183917 52183917 C T POC1A Missense_Mutation p.V64I 0.11 tolerated(0.26) benign(0.106) TCGA-G4-6304-01 3 52391938 52391938 A G DNAH1 Silent p.E1335E 0.14 TCGA-G4-6304-01 3 52417511 52417511 C A DNAH1 Missense_Mutation p.P2684H 0.11 benign(0.119) TCGA-G4-6304-01 3 52786197 52786197 T - NEK4 Frame_Shift_Del p.R375Gfs*4 0.15 TCGA-G4-6304-01 3 53321446 53321446 T C DCP1A 3'UTR 0.22 TCGA-G4-6304-01 3 53353456 53353456 G A DCP1A Missense_Mutation p.R117C 0.20 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 3 53857400 53857400 C T CHDH Silent p.P212P 0.09 TCGA-G4-6304-01 3 56173669 56173669 C G ERC2 Missense_Mutation p.E447D 0.14 tolerated(0.74) benign(0.028) TCGA-G4-6304-01 3 57310648 57310648 C T ASB14 Missense_Mutation p.R565H 0.15 tolerated(0.28) probably_damaging(0.956) TCGA-G4-6304-01 3 57545273 57545273 T - PDE12 Intron 0.10 TCGA-G4-6304-01 3 57619030 57619030 A G DENND6A Missense_Mutation p.Y439H 0.15 tolerated(1) benign(0.017) TCGA-G4-6304-01 3 57894832 57894832 C T SLMAP Nonsense_Mutation p.R518* 0.06 TCGA-G4-6304-01 3 62739346 62739346 G A CADPS Missense_Mutation p.R220C 0.11 deleterious(0) possibly_damaging(0.689) TCGA-G4-6304-01 3 66431205 66431205 G A LRIG1 Missense_Mutation p.P951S 0.15 tolerated(0.17) benign(0.011) TCGA-G4-6304-01 3 69267483 69267483 T G FRMD4B Missense_Mutation p.Y260S 0.09 deleterious(0) probably_damaging(0.998) TCGA-G4-6304-01 3 71821768 71821768 G A PROK2 3'UTR 0.12 TCGA-G4-6304-01 3 74316482 74316482 T C CNTN3 Missense_Mutation p.K918E 0.12 deleterious(0.04) benign(0.129) TCGA-G4-6304-01 3 77645846 77645846 G T ROBO2 Missense_Mutation p.L949F 0.17 tolerated(0.24) possibly_damaging(0.587) TCGA-G4-6304-01 3 9419510 9419510 G C THUMPD3 Missense_Mutation p.D316H 0.12 tolerated(0.06) possibly_damaging(0.722) TCGA-G4-6304-01 3 97887708 97887708 T G OR5H15 Silent p.L55L 0.12 TCGA-G4-6304-01 3 9804686 9804686 G A CAMK1 Missense_Mutation p.T114M 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 3 98109763 98109763 T G OR5K3 Missense_Mutation p.F85C 0.13 deleterious(0) probably_damaging(0.968) TCGA-G4-6304-01 3 9991573 9991573 C T PRRT3 Missense_Mutation p.R76H 0.15 tolerated_low_confidence(0.08) benign(0.001) TCGA-G4-6304-01 4 106155855 106155855 T C TET2 Silent p.I252I 0.11 TCGA-G4-6304-01 4 114823938 114823938 T - ARSJ Frame_Shift_Del p.N431Mfs*86 0.09 TCGA-G4-6304-01 4 122739247 122739247 G A CCNA2 Missense_Mutation p.A401V 0.16 deleterious(0.05) possibly_damaging(0.834) TCGA-G4-6304-01 4 123270452 123270452 A G KIAA1109 Missense_Mutation p.N4474D 0.11 probably_damaging(0.989) TCGA-G4-6304-01 4 126239517 126239517 G A FAT4 Missense_Mutation p.E651K 0.21 possibly_damaging(0.61) TCGA-G4-6304-01 4 126371990 126371990 C A FAT4 Silent p.V3273V 0.14 TCGA-G4-6304-01 4 1369200 1369200 C T UVSSA Missense_Mutation p.T446M 0.10 tolerated(0.14) benign(0.007) TCGA-G4-6304-01 4 138451499 138451499 G A PCDH18 Missense_Mutation p.R582C 0.08 tolerated(0.17) possibly_damaging(0.556) TCGA-G4-6304-01 4 145568050 145568050 C T HHIP Missense_Mutation p.R75W 0.13 deleterious(0) probably_damaging(0.91) TCGA-G4-6304-01 4 146058636 146058636 C T OTUD4 Silent p.R1032R 0.10 TCGA-G4-6304-01 4 153864507 153864507 T - FHDC1 Frame_Shift_Del p.W102Gfs*55 0.16 TCGA-G4-6304-01 4 155412366 155412366 G A DCHS2 Missense_Mutation p.L48F 0.09 tolerated(0.1) benign(0.018) TCGA-G4-6304-01 4 155506621 155506621 A G FGA Intron 0.09 TCGA-G4-6304-01 4 155525489 155525489 C T FGG 3'Flank 0.12 TCGA-G4-6304-01 4 15640312 15640312 A - FBXL5 Frame_Shift_Del p.Q135Sfs*4 0.09 TCGA-G4-6304-01 4 159790234 159790234 G A FNIP2 Missense_Mutation p.A816T 0.17 tolerated(0.56) benign(0.003) TCGA-G4-6304-01 4 165878811 165878811 T C FAM218A 3'UTR 0.09 TCGA-G4-6304-01 4 169341457 169341457 G A DDX60L Silent p.C823C 0.12 TCGA-G4-6304-01 4 169433516 169433516 A G PALLD Silent p.R287R 0.10 TCGA-G4-6304-01 4 170315652 170315652 T - NEK1 3'UTR 0.10 TCGA-G4-6304-01 4 183245350 183245350 C T TENM3 Silent p.Y59Y 0.13 TCGA-G4-6304-01 4 183609359 183609359 G - TENM3 Frame_Shift_Del p.T695Rfs*81 0.17 TCGA-G4-6304-01 4 185310068 185310068 C T IRF2 Silent p.P298P 0.17 TCGA-G4-6304-01 4 187540974 187540974 C T FAT1 Missense_Mutation p.A2256T 0.22 probably_damaging(1) TCGA-G4-6304-01 4 1985645 1985645 G - NELFA Frame_Shift_Del p.P422Rfs*67 0.30 TCGA-G4-6304-01 4 1985796 1985796 C T NELFA Missense_Mutation p.A372T 0.11 tolerated(0.56) benign(0.001) TCGA-G4-6304-01 4 2275818 2275818 A T ZFYVE28 Missense_Mutation p.L726H 0.14 deleterious(0) probably_damaging(0.968) TCGA-G4-6304-01 4 25769162 25769162 C T SEL1L3 Missense_Mutation p.D944N 0.09 tolerated(0.66) benign(0.003) TCGA-G4-6304-01 4 2674047 2674047 G A FAM193A Missense_Mutation p.R469H 0.12 deleterious(0) probably_damaging(0.993) TCGA-G4-6304-01 4 2900173 2900173 G A ADD1 Missense_Mutation p.R300Q 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6304-01 4 39064613 39064613 G A KLHL5 Missense_Mutation p.G160D 0.13 tolerated_low_confidence(0.4) benign(0.137) TCGA-G4-6304-01 4 39077684 39077684 T A KLHL5 Missense_Mutation p.F207L 0.08 tolerated(1) benign(0.282) TCGA-G4-6304-01 4 39448920 39448920 C A KLB Silent p.S858S 0.14 TCGA-G4-6304-01 4 39827041 39827041 G T PDS5A 3'UTR 0.08 TCGA-G4-6304-01 4 41984925 41984925 C T DCAF4L1 Silent p.L372L 0.18 TCGA-G4-6304-01 4 42400250 42400250 C A SHISA3 Silent p.S59S 0.15 TCGA-G4-6304-01 4 44680574 44680574 A - GUF1 5'UTR 0.18 TCGA-G4-6304-01 4 46099296 46099296 T - GABRG1 Frame_Shift_Del p.I59Ffs*10 0.13 TCGA-G4-6304-01 4 55161334 55161334 C T PDGFRA Silent p.S1055S 0.13 TCGA-G4-6304-01 4 57179503 57179503 A - KIAA1211 Frame_Shift_Del p.K167Nfs*82 0.18 TCGA-G4-6304-01 4 619547 619547 C T PDE6B Silent p.C44C 0.06 TCGA-G4-6304-01 4 7056372 7056372 G A TADA2B Missense_Mutation p.R285Q 0.13 deleterious(0.01) possibly_damaging(0.475) TCGA-G4-6304-01 4 70810695 70810695 A - CSN1S1 Frame_Shift_Del p.N179Ifs*16 0.12 TCGA-G4-6304-01 4 71588260 71588260 G C RUFY3 5'UTR 0.23 TCGA-G4-6304-01 4 74019691 74019691 C T ANKRD17 Silent p.V380V 0.10 TCGA-G4-6304-01 4 7435458 7435458 C T PSAPL1 Silent p.P383P 0.09 TCGA-G4-6304-01 4 77660841 77660841 G T SHROOM3 Missense_Mutation p.Q505H 0.08 tolerated(0.28) benign(0.003) TCGA-G4-6304-01 4 8376871 8376871 G A ACOX3 Silent p.H554H 0.07 TCGA-G4-6304-01 4 88036157 88036157 C T AFF1 Silent p.S724S 0.16 TCGA-G4-6304-01 4 89602385 89602385 G A HERC3 Missense_Mutation p.D806N 0.09 tolerated(0.24) probably_damaging(1) TCGA-G4-6304-01 4 89628196 89628197 - T HERC3 3'UTR 0.16 TCGA-G4-6304-01 4 94750382 94750382 G - ATOH1 Frame_Shift_Del p.E104Sfs*3 0.12 TCGA-G4-6304-01 4 96470055 96470055 C T UNC5C 5'UTR 0.13 TCGA-G4-6304-01 4 9785349 9785349 G C DRD5 3'UTR 0.09 TCGA-G4-6304-01 4 9998507 9998507 G T SLC2A9 Missense_Mutation p.P103Q 0.05 tolerated(0.44) benign(0.285) TCGA-G4-6304-01 5 102469330 102469330 T C PPIP5K2 Silent p.C96C 0.12 TCGA-G4-6304-01 5 102612501 102612501 A - C5orf30 3'UTR 0.09 TCGA-G4-6304-01 5 110434447 110434447 G A WDR36 Missense_Mutation p.A163T 0.15 tolerated(0.22) benign(0.013) TCGA-G4-6304-01 5 112175100 112175101 - T APC Frame_Shift_Ins p.S1272Ffs*4 0.14 TCGA-G4-6304-01 5 112175748 112175754 ATACTTT - APC Frame_Shift_Del p.T1487Yfs*18 0.11 TCGA-G4-6304-01 5 112399822 112399822 C T MCC Missense_Mutation p.R691Q 0.17 tolerated(0.05) benign(0.182) TCGA-G4-6304-01 5 118465026 118465026 T - DMXL1 Frame_Shift_Del p.L410Yfs*17 0.11 TCGA-G4-6304-01 5 118824925 118824925 C A HSD17B4 Missense_Mutation p.L246I 0.04 deleterious(0.02) possibly_damaging(0.899) TCGA-G4-6304-01 5 118862888 118862888 G A HSD17B4 Missense_Mutation p.G606R 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-G4-6304-01 5 127626457 127626457 C - FBN2 Frame_Shift_Del p.D2138Tfs*111 0.11 TCGA-G4-6304-01 5 131607079 131607079 C T PDLIM4 Missense_Mutation p.P197L 0.14 tolerated(0.21) benign(0.06) TCGA-G4-6304-01 5 132152349 132152349 T C SOWAHA 3'UTR 0.15 TCGA-G4-6304-01 5 133900286 133900286 G T JADE2 Missense_Mutation p.G319C 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 5 134191392 134191392 T - C5orf24 3'UTR 0.12 TCGA-G4-6304-01 5 138208942 138208942 A - LRRTM2 Frame_Shift_Del p.F436Lfs*5 0.14 TCGA-G4-6304-01 5 138707712 138707712 C T SLC23A1 Missense_Mutation p.V598M 0.11 tolerated_low_confidence(0.12) benign(0.023) TCGA-G4-6304-01 5 139938347 139938347 C A APBB3 Missense_Mutation p.Q435H 0.12 tolerated(0.18) probably_damaging(0.998) TCGA-G4-6304-01 5 140167806 140167806 G A PCDHA1 Missense_Mutation p.R644H 0.15 deleterious_low_confidence(0.02) benign(0.209) TCGA-G4-6304-01 5 140216075 140216075 G A PCDHA7 Missense_Mutation p.A703T 0.13 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-G4-6304-01 5 140229637 140229637 G A PCDHA9 Silent p.A519A 0.11 TCGA-G4-6304-01 5 140256932 140256932 G A PCDHA12 Silent p.G625G 0.05 TCGA-G4-6304-01 5 140431138 140431138 C T PCDHB1 Missense_Mutation p.A28V 0.10 deleterious(0.05) benign(0.002) TCGA-G4-6304-01 5 140532310 140532310 C A PCDHB6 3'UTR 0.05 TCGA-G4-6304-01 5 140590088 140590088 G A PCDHB12 Missense_Mutation p.G537S 0.09 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-G4-6304-01 5 140741361 140741361 C T PCDHGB2 Silent p.G553G 0.13 TCGA-G4-6304-01 5 140754091 140754091 T A PCDHGA6 Silent p.A147A 0.09 TCGA-G4-6304-01 5 140773864 140773864 C T PCDHGA8 Missense_Mutation p.T495M 0.14 deleterious_low_confidence(0.01) benign(0.275) TCGA-G4-6304-01 5 140774158 140774158 C T PCDHGA8 Missense_Mutation p.A593V 0.07 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-G4-6304-01 5 140856667 140856667 C T PCDHGC3 Silent p.G328G 0.11 TCGA-G4-6304-01 5 140857742 140857742 A - PCDHGC3 Frame_Shift_Del p.N689Ifs*10 0.20 TCGA-G4-6304-01 5 141041798 141041798 C T ARAP3 Missense_Mutation p.R942Q 0.09 tolerated(0.26) probably_damaging(1) TCGA-G4-6304-01 5 14387627 14387627 A - TRIO Frame_Shift_Del p.K1219Nfs*43 0.11 TCGA-G4-6304-01 5 145379706 145379706 G A SH3RF2 Missense_Mutation p.R155Q 0.11 tolerated(0.1) benign(0.127) TCGA-G4-6304-01 5 145631308 145631308 T A RBM27 Silent p.A438A 0.11 TCGA-G4-6304-01 5 147040554 147040554 A G JAKMIP2 Missense_Mutation p.I195T 0.07 deleterious(0) benign(0.082) TCGA-G4-6304-01 5 147695293 147695293 T A SPINK7 3'UTR 0.19 TCGA-G4-6304-01 5 148207421 148207421 C T ADRB2 Missense_Mutation p.R343C 0.09 deleterious(0.05) possibly_damaging(0.847) TCGA-G4-6304-01 5 148747942 148747942 C T PCYOX1L Missense_Mutation p.R404W 0.15 deleterious(0) probably_damaging(0.986) TCGA-G4-6304-01 5 149264407 149264407 A T PDE6A Missense_Mutation p.L621H 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 5 149449859 149449859 G - CSF1R Frame_Shift_Del p.P402Qfs*3 0.11 TCGA-G4-6304-01 5 149582257 149582257 G A SLC6A7 Missense_Mutation p.A360T 0.16 deleterious(0.02) probably_damaging(0.992) TCGA-G4-6304-01 5 149777989 149777989 C T TCOF1 Missense_Mutation p.P1472L 0.10 tolerated_low_confidence(0.23) unknown(0) TCGA-G4-6304-01 5 149901160 149901160 T A NDST1 Missense_Mutation p.I115N 0.12 deleterious(0) probably_damaging(0.968) TCGA-G4-6304-01 5 150027557 150027557 C T SYNPO Missense_Mutation p.A151V 0.11 tolerated(0.18) benign(0.017) TCGA-G4-6304-01 5 150502515 150502515 T C ANXA6 Missense_Mutation p.Q399R 0.10 deleterious(0) possibly_damaging(0.807) TCGA-G4-6304-01 5 153434853 153434853 G A MFAP3 3'UTR 0.08 TCGA-G4-6304-01 5 1593321 1593321 G A CTD-2012J19.3 5'Flank 0.14 TCGA-G4-6304-01 5 161118982 161118982 A T GABRA6 Missense_Mutation p.I288F 0.08 deleterious(0.03) probably_damaging(0.914) TCGA-G4-6304-01 5 167891893 167891893 G A WWC1 Missense_Mutation p.G1032R 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 5 169122918 169122918 C T DOCK2 Silent p.L319L 0.25 TCGA-G4-6304-01 5 175305973 175305973 A - CPLX2 Frame_Shift_Del p.K33Rfs*40 0.13 TCGA-G4-6304-01 5 175815276 175815276 G C NOP16 Missense_Mutation p.A59G 0.11 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-G4-6304-01 5 176562813 176562813 A - NSD1 Frame_Shift_Del p.N238Ifs*23 0.16 TCGA-G4-6304-01 5 176958425 176958425 C - FAM193B Intron 0.23 TCGA-G4-6304-01 5 178194195 178194195 C T AACSP1 RNA 0.25 TCGA-G4-6304-01 5 178460241 178460241 A G ZNF879 Missense_Mutation p.N431S 0.17 tolerated(0.31) benign(0.174) TCGA-G4-6304-01 5 179264629 179264629 C A C5orf45 Missense_Mutation p.G265V 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6304-01 5 180030231 180030232 - G FLT4 Frame_Shift_Ins p.S1352Vfs*92 0.10 TCGA-G4-6304-01 5 180047665 180047665 C T FLT4 Missense_Mutation p.V784I 0.17 deleterious(0.04) benign(0.108) TCGA-G4-6304-01 5 180374580 180374580 T - BTNL8 Frame_Shift_Del p.F249Lfs*6 0.14 TCGA-G4-6304-01 5 180661615 180661615 G A TRIM41 Missense_Mutation p.R578H 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 5 24509923 24509923 G A CDH10 Silent p.L336L 0.11 TCGA-G4-6304-01 5 31449411 31449411 T G DROSHA Missense_Mutation p.H933P 0.08 deleterious(0.01) probably_damaging(0.921) TCGA-G4-6304-01 5 34941288 34941288 C T DNAJC21 Missense_Mutation p.A328V 0.11 deleterious(0) probably_damaging(0.971) TCGA-G4-6304-01 5 35753738 35753738 C T SPEF2 Missense_Mutation p.R1115C 0.19 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 5 36066805 36066805 A G UGT3A2 Silent p.S29S 0.16 TCGA-G4-6304-01 5 36195136 36195136 C T NADK2 3'UTR 0.14 TCGA-G4-6304-01 5 36629687 36629687 C T SLC1A3 Missense_Mutation p.T106I 0.15 deleterious(0.01) probably_damaging(0.974) TCGA-G4-6304-01 5 36984789 36984789 A - NIPBL Frame_Shift_Del p.R505Efs*35 0.14 TCGA-G4-6304-01 5 37314313 37314313 G A NUP155 Missense_Mutation p.A808V 0.10 tolerated(0.05) benign(0.263) TCGA-G4-6304-01 5 44815089 44815089 T - MRPS30 Frame_Shift_Del p.F370Sfs*5 0.08 TCGA-G4-6304-01 5 483528 483528 G A SLC9A3 Silent p.T334T 0.14 TCGA-G4-6304-01 5 54277905 54277905 C T ESM1 Missense_Mutation p.R124K 0.12 tolerated(0.12) benign(0.045) TCGA-G4-6304-01 5 60839801 60839801 C T ZSWIM6 Missense_Mutation p.T1102M 0.15 deleterious(0.03) possibly_damaging(0.725) TCGA-G4-6304-01 5 6616846 6616846 T - NSUN2 Frame_Shift_Del p.S339Vfs*17 0.11 TCGA-G4-6304-01 5 66462135 66462135 A C MAST4 Missense_Mutation p.E2376D 0.09 benign(0.071) TCGA-G4-6304-01 5 68491618 68491618 G T CENPH Missense_Mutation p.R105M 0.10 deleterious(0) probably_damaging(0.969) TCGA-G4-6304-01 5 71482444 71482444 C T MAP1B Missense_Mutation p.R125C 0.10 unknown(0) TCGA-G4-6304-01 5 71756503 71756503 C T ZNF366 Missense_Mutation p.G274D 0.08 tolerated(0.07) probably_damaging(0.998) TCGA-G4-6304-01 5 72383898 72383898 G A FCHO2 Missense_Mutation p.R805Q 0.06 tolerated(0.06) possibly_damaging(0.774) TCGA-G4-6304-01 5 73148497 73148497 G A ARHGEF28 Silent p.S590S 0.06 TCGA-G4-6304-01 5 73930595 73930595 C T ENC1 Silent p.P572P 0.10 TCGA-G4-6304-01 5 96503089 96503090 - A RIOK2 Intron 0.21 TCGA-G4-6304-01 6 101054825 101054825 A G ASCC3 Splice_Site p.X1641_splice 0.14 TCGA-G4-6304-01 6 10529298 10529299 - T GCNT2 Frame_Shift_Ins p.E54* 0.11 TCGA-G4-6304-01 6 117589518 117589518 C T VGLL2 Silent p.C85C 0.12 TCGA-G4-6304-01 6 123038980 123038980 G A PKIB Missense_Mutation p.G21E 0.17 tolerated(0.08) benign(0.162) TCGA-G4-6304-01 6 126278260 126278260 G T HINT3 Missense_Mutation p.S46I 0.08 tolerated(0.05) benign(0.373) TCGA-G4-6304-01 6 127836085 127836085 G A SOGA3 Silent p.N403N 0.15 TCGA-G4-6304-01 6 128410991 128410991 C T PTPRK Missense_Mutation p.E437K 0.10 tolerated(0.32) benign(0.003) TCGA-G4-6304-01 6 132271259 132271259 T C CTGF Missense_Mutation p.I195V 0.19 tolerated(0.5) benign(0.001) TCGA-G4-6304-01 6 132874313 132874313 C T TAAR8 Missense_Mutation p.T161M 0.18 tolerated(0.16) benign(0.046) TCGA-G4-6304-01 6 135318745 135318745 G A HBS1L Missense_Mutation p.P197S 0.11 tolerated(0.55) benign(0.001) TCGA-G4-6304-01 6 138768189 138768189 G A NHSL1 Nonsense_Mutation p.R209* 0.12 TCGA-G4-6304-01 6 146127393 146127393 C T FBXO30 Missense_Mutation p.R50Q 0.12 tolerated(0.33) benign(0.023) TCGA-G4-6304-01 6 146276195 146276195 A C SHPRH Silent p.T88T 0.08 TCGA-G4-6304-01 6 150001009 150001009 A G LATS1 Splice_Site p.X865_splice 0.12 TCGA-G4-6304-01 6 151672315 151672315 C A AKAP12 Missense_Mutation p.A930E 0.13 tolerated(0.79) benign(0.001) TCGA-G4-6304-01 6 152631914 152631915 - T SYNE1 Frame_Shift_Ins p.M5602Nfs*13 0.11 TCGA-G4-6304-01 6 152708428 152708428 T - SYNE1 Frame_Shift_Del p.I2756* 0.10 TCGA-G4-6304-01 6 153345577 153345577 C A RGS17 Missense_Mutation p.M88I 0.14 deleterious(0.02) benign(0.003) TCGA-G4-6304-01 6 155743924 155743924 G A NOX3 Silent p.C404C 0.18 TCGA-G4-6304-01 6 166580245 166580245 C T T Nonsense_Mutation p.W102* 0.18 TCGA-G4-6304-01 6 166743003 166743003 C T SFT2D1 Silent p.A75A 0.14 TCGA-G4-6304-01 6 168377483 168377483 G T RP3-470B24.5 RNA 0.17 TCGA-G4-6304-01 6 24556897 24556897 C T KIAA0319 Missense_Mutation p.C932Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 6 25665222 25665222 C T SCGN Missense_Mutation p.R100W 0.12 tolerated(0.18) benign(0.004) TCGA-G4-6304-01 6 26246928 26246928 C T HIST1H4G Missense_Mutation p.R93H 0.09 tolerated(0.07) benign(0.348) TCGA-G4-6304-01 6 27925448 27925448 T G OR2B6 Missense_Mutation p.L144V 0.16 deleterious(0) benign(0.344) TCGA-G4-6304-01 6 29641062 29641062 G A ZFP57 Missense_Mutation p.R276C 0.17 deleterious(0.03) probably_damaging(1) TCGA-G4-6304-01 6 31323363 31323363 G - HLA-B Frame_Shift_Del p.P209Qfs*5 0.12 TCGA-G4-6304-01 6 31868026 31868026 G A ZBTB12 Missense_Mutation p.R353W 0.15 deleterious(0) possibly_damaging(0.689) TCGA-G4-6304-01 6 32064016 32064016 G A TNXB Silent p.C538C 0.15 TCGA-G4-6304-01 6 32805537 32805539 GAA - TAP2 In_Frame_Del p.F158del 0.13 TCGA-G4-6304-01 6 33041248 33041248 C T HLA-DPA1 Missense_Mutation p.A34T 0.08 deleterious(0.03) benign(0.093) TCGA-G4-6304-01 6 34003454 34003454 C A GRM4 Silent p.S811S 0.09 TCGA-G4-6304-01 6 34953007 34953007 G A ANKS1A Silent p.T387T 0.14 TCGA-G4-6304-01 6 35213875 35213875 T C SCUBE3 Splice_Site p.X918_splice 0.15 TCGA-G4-6304-01 6 35438392 35438392 G T RPL10A Missense_Mutation p.K173N 0.16 tolerated(0.27) benign(0.012) TCGA-G4-6304-01 6 36930895 36930895 T C PI16 Silent p.A259A 0.18 TCGA-G4-6304-01 6 36995229 36995229 C T FGD2 Nonsense_Mutation p.Q544* 0.14 TCGA-G4-6304-01 6 37430698 37430698 G A CMTR1 Silent p.T473T 0.11 TCGA-G4-6304-01 6 37452898 37452898 G A CCDC167 Missense_Mutation p.R39W 0.11 deleterious(0.01) benign(0.398) TCGA-G4-6304-01 6 38821003 38821003 G A DNAH8 Nonsense_Mutation p.W1654* 0.17 TCGA-G4-6304-01 6 39841056 39841056 A T DAAM2 Missense_Mutation p.I363F 0.09 deleterious(0) probably_damaging(0.99) TCGA-G4-6304-01 6 41021161 41021161 C T APOBEC2 Silent p.D25D 0.19 TCGA-G4-6304-01 6 42196261 42196261 G A TRERF1 Missense_Mutation p.P1142L 0.09 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-G4-6304-01 6 43171202 43171202 G A CUL9 Silent p.K1299K 0.14 TCGA-G4-6304-01 6 43183990 43183990 C T CUL9 Missense_Mutation p.R2011C 0.19 tolerated(0.1) possibly_damaging(0.684) TCGA-G4-6304-01 6 43266367 43266367 A G SLC22A7 Missense_Mutation p.N91D 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-G4-6304-01 6 43415563 43415563 G T ABCC10 Missense_Mutation p.G1283C 0.20 deleterious(0) probably_damaging(0.914) TCGA-G4-6304-01 6 43417740 43417740 G A ABCC10 Missense_Mutation p.A1464T 0.15 tolerated(0.46) benign(0.005) TCGA-G4-6304-01 6 44151749 44151749 T C CAPN11 3'UTR 0.13 TCGA-G4-6304-01 6 44248124 44248124 C T TCTE1 Missense_Mutation p.G434S 0.18 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 6 54208056 54208057 - T TINAG Frame_Shift_Ins p.V222Cfs*5 0.08 TCGA-G4-6304-01 6 56483171 56483173 CTT - DST Intron 0.12 TCGA-G4-6304-01 6 56505288 56505288 G A DST Nonsense_Mutation p.Q178* 0.12 TCGA-G4-6304-01 6 66205308 66205308 G A EYS 5'UTR 0.16 TCGA-G4-6304-01 6 74078545 74078545 C T OOEP Missense_Mutation p.A138T 0.12 tolerated(0.09) benign(0.125) TCGA-G4-6304-01 6 7581173 7581173 G A DSP Missense_Mutation p.A1584T 0.13 benign(0.007) TCGA-G4-6304-01 6 89600294 89600294 C T RNGTT Silent p.Q272Q 0.09 TCGA-G4-6304-01 6 96661645 96661645 A - FUT9 3'UTR 0.13 TCGA-G4-6304-01 7 100279776 100279776 C T GIGYF1 Silent p.T948T 0.29 TCGA-G4-6304-01 7 100675342 100675342 C T MUC17 Silent p.S215S 0.12 TCGA-G4-6304-01 7 100806757 100806757 A G VGF Silent p.I456I 0.12 TCGA-G4-6304-01 7 102114816 102114816 G A POLR2J Missense_Mutation p.R104C 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-G4-6304-01 7 111368621 111368621 A G DOCK4 Silent p.N1870N 0.14 TCGA-G4-6304-01 7 111503489 111503489 C T DOCK4 Silent p.L804L 0.08 TCGA-G4-6304-01 7 113519649 113519649 A G PPP1R3A Missense_Mutation p.S500P 0.06 tolerated(0.12) benign(0.055) TCGA-G4-6304-01 7 122526082 122526082 G T CADPS2 Missense_Mutation p.P104T 0.10 tolerated(0.13) probably_damaging(0.973) TCGA-G4-6304-01 7 12668740 12668740 A C SCIN Missense_Mutation p.E404D 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-G4-6304-01 7 129122851 129122851 C T STRIP2 Missense_Mutation p.R740C 0.11 deleterious(0) probably_damaging(0.993) TCGA-G4-6304-01 7 136701244 136701244 T C CHRM2 3'UTR 0.10 TCGA-G4-6304-01 7 13940418 13940418 T C ETV1 Missense_Mutation p.Y386C 0.15 deleterious(0.02) benign(0.17) TCGA-G4-6304-01 7 139416016 139416016 G A HIPK2 Missense_Mutation p.T273M 0.16 deleterious(0) probably_damaging(0.992) TCGA-G4-6304-01 7 142481800 142481800 G A PRSS3P2 RNA 0.15 TCGA-G4-6304-01 7 143657443 143657443 G A OR2F1 Missense_Mutation p.C127Y 0.06 deleterious(0) benign(0.217) TCGA-G4-6304-01 7 148909509 148909509 G A ZNF282 Missense_Mutation p.V338M 0.14 deleterious(0.02) probably_damaging(0.972) TCGA-G4-6304-01 7 149545161 149545161 C T ZNF862 Silent p.H193H 0.12 TCGA-G4-6304-01 7 150034674 150034674 G A LRRC61 Missense_Mutation p.A242T 0.20 tolerated(0.07) benign(0.051) TCGA-G4-6304-01 7 150094171 150094171 G A ZNF775 Missense_Mutation p.R201H 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6304-01 7 150774114 150774114 C T FASTK Silent p.R476R 0.18 TCGA-G4-6304-01 7 1510323 1510323 C T INTS1 Missense_Mutation p.A2155T 0.18 deleterious(0) possibly_damaging(0.796) TCGA-G4-6304-01 7 1527082 1527082 C - INTS1 Frame_Shift_Del p.R843Gfs*11 0.10 TCGA-G4-6304-01 7 1539954 1539954 C T INTS1 Missense_Mutation p.G133D 0.14 tolerated(0.23) benign(0.073) TCGA-G4-6304-01 7 155537832 155537832 C - RBM33 Frame_Shift_Del p.P840Qfs*31 0.15 TCGA-G4-6304-01 7 17349622 17349622 T C AHR Missense_Mutation p.L43P 0.08 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 7 22852663 22852663 G A TOMM7 3'UTR 0.17 TCGA-G4-6304-01 7 24324890 24324890 G A NPY Missense_Mutation p.G11R 0.09 tolerated(0.36) benign(0.001) TCGA-G4-6304-01 7 24324957 24324957 C T NPY Missense_Mutation p.P33L 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 7 2565127 2565127 C T LFNG Missense_Mutation p.R221W 0.10 tolerated(0.12) benign(0.032) TCGA-G4-6304-01 7 26404689 26404689 A - SNX10 Frame_Shift_Del p.N80Tfs*6 0.10 TCGA-G4-6304-01 7 27187108 27187108 G A HOXA6 Silent p.G87G 0.08 TCGA-G4-6304-01 7 27570809 27570809 A G HIBADH Splice_Site p.X284_splice 0.07 TCGA-G4-6304-01 7 30915135 30915135 G T FAM188B Missense_Mutation p.G612V 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 7 32526806 32526806 A G LSM5 3'UTR 0.29 TCGA-G4-6304-01 7 42262807 42262808 - T GLI3 Frame_Shift_Ins p.V16Sfs*2 0.10 TCGA-G4-6304-01 7 44104872 44104872 C T PGAM2 Missense_Mutation p.R86H 0.14 deleterious(0.03) benign(0.014) TCGA-G4-6304-01 7 44736974 44736974 G A OGDH Missense_Mutation p.R686H 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 7 47842892 47842892 G A PKD1L1 Silent p.C2626C 0.12 TCGA-G4-6304-01 7 48099971 48099971 T C C7orf57 3'UTR 0.07 TCGA-G4-6304-01 7 4828515 4828515 C T AP5Z1 Missense_Mutation p.A547V 0.25 deleterious(0.01) benign(0.169) TCGA-G4-6304-01 7 5104238 5104238 G A RBAK Missense_Mutation p.R384H 0.15 tolerated(0.4) probably_damaging(0.999) TCGA-G4-6304-01 7 55492987 55492987 G A LANCL2 Missense_Mutation p.C350Y 0.12 deleterious(0) probably_damaging(0.99) TCGA-G4-6304-01 7 5568124 5568124 C T ACTB Missense_Mutation p.G197D 0.12 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-G4-6304-01 7 56007238 56007239 TG - ZNF713 Frame_Shift_Del p.C278Wfs*52 0.08 TCGA-G4-6304-01 7 57194390 57194390 G C ZNF479 Missense_Mutation p.F25L 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-G4-6304-01 7 5769125 5769125 T C RNF216 Missense_Mutation p.S443G 0.08 deleterious(0) probably_damaging(0.994) TCGA-G4-6304-01 7 65150670 65150670 G A INTS4L2 RNA 0.12 TCGA-G4-6304-01 7 66273906 66273906 G A KCTD7 Missense_Mutation p.A371T 0.14 deleterious(0) probably_damaging(0.924) TCGA-G4-6304-01 7 6786741 6786741 G A PMS2CL RNA 0.12 TCGA-G4-6304-01 7 70251021 70251021 G A AUTS2 Missense_Mutation p.V769I 0.21 tolerated(0.06) possibly_damaging(0.538) TCGA-G4-6304-01 7 73526026 73526026 G A LIMK1 Missense_Mutation p.A445T 0.18 deleterious(0.01) possibly_damaging(0.815) TCGA-G4-6304-01 7 74211703 74211703 G A GTF2IRD2 Silent p.R716R 0.10 TCGA-G4-6304-01 7 77365775 77365775 A - RSBN1L Frame_Shift_Del p.K214Rfs*5 0.13 TCGA-G4-6304-01 7 82763819 82763819 G A PCLO Missense_Mutation p.P1016L 0.13 unknown(0) TCGA-G4-6304-01 7 86416334 86416334 G A GRM3 Missense_Mutation p.R409H 0.13 tolerated(0.09) benign(0.007) TCGA-G4-6304-01 7 86820330 86820330 T A DMTF1 Missense_Mutation p.F494Y 0.11 tolerated(0.14) benign(0.375) TCGA-G4-6304-01 7 87563858 87563858 C T ADAM22 Silent p.G26G 0.09 TCGA-G4-6304-01 7 94051255 94051255 A G COL1A2 Silent p.P798P 0.11 TCGA-G4-6304-01 7 95606891 95606892 - A DYNC1I1 Frame_Shift_Ins p.Q206Tfs*30 0.10 TCGA-G4-6304-01 7 95761173 95761173 C T SLC25A13 Silent p.L492L 0.10 TCGA-G4-6304-01 7 97852437 97852437 G - TECPR1 Frame_Shift_Del p.I932Sfs*105 0.14 TCGA-G4-6304-01 7 99021530 99021530 C T ATP5J2-PTCD1 Silent p.A645A 0.08 TCGA-G4-6304-01 7 99689333 99689333 T C COPS6 Missense_Mutation p.M302T 0.20 deleterious(0.05) benign(0.021) TCGA-G4-6304-01 7 99690613 99690613 T C MCM7 Missense_Mutation p.Y701C 0.14 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 7 99710980 99710980 G A TAF6 Missense_Mutation p.P186L 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-G4-6304-01 8 102644502 102644502 T C GRHL2 Missense_Mutation p.I465T 0.07 tolerated(0.48) benign(0.004) TCGA-G4-6304-01 8 113563079 113563079 G A CSMD3 Missense_Mutation p.T1462M 0.11 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 8 118541014 118541014 A T MED30 Missense_Mutation p.E101V 0.11 deleterious(0) possibly_damaging(0.824) TCGA-G4-6304-01 8 124373812 124373812 C T ATAD2 Missense_Mutation p.R375Q 0.18 tolerated(0.07) benign(0.033) TCGA-G4-6304-01 8 12881830 12881830 G A KIAA1456 3'UTR 0.22 TCGA-G4-6304-01 8 133945851 133945851 C T TG Missense_Mutation p.T1621M 0.09 tolerated(0.17) benign(0.002) TCGA-G4-6304-01 8 134072357 134072357 G A SLA Missense_Mutation p.P57S 0.06 tolerated(0.17) benign(0.015) TCGA-G4-6304-01 8 134488255 134488255 G A ST3GAL1 Missense_Mutation p.R5W 0.19 possibly_damaging(0.609) TCGA-G4-6304-01 8 139611050 139611050 C T COL22A1 Missense_Mutation p.G1426D 0.07 unknown(0) TCGA-G4-6304-01 8 141559308 141559308 G A AGO2 Missense_Mutation p.A498V 0.07 tolerated(0.38) benign(0.01) TCGA-G4-6304-01 8 142517284 142517284 C A MROH5 5'UTR 0.19 TCGA-G4-6304-01 8 143425471 143425471 C T TSNARE1 Missense_Mutation p.D201N 0.11 deleterious_low_confidence(0) benign(0.353) TCGA-G4-6304-01 8 143993422 143993422 G - CYP11B2 Frame_Shift_Del p.L496Sfs*178 0.13 TCGA-G4-6304-01 8 144296928 144296928 C T GPIHBP1 Silent p.D74D 0.10 TCGA-G4-6304-01 8 144550562 144550562 C T ZC3H3 Missense_Mutation p.V699M 0.18 deleterious(0) possibly_damaging(0.846) TCGA-G4-6304-01 8 144657234 144657235 CT - NAPRT1 Frame_Shift_Del p.E492Vfs*2 0.08 TCGA-G4-6304-01 8 144662301 144662301 C - EEF1D Frame_Shift_Del p.A596Lfs*55 0.11 TCGA-G4-6304-01 8 144995678 144995678 C T PLEC Missense_Mutation p.E2908K 0.09 probably_damaging(1) TCGA-G4-6304-01 8 145065437 145065437 C - GRINA Frame_Shift_Del p.N18Tfs*150 0.10 TCGA-G4-6304-01 8 1497822 1497822 C T DLGAP2 Silent p.P321P 0.24 TCGA-G4-6304-01 8 1876706 1876706 C T ARHGEF10 Silent p.Y937Y 0.15 TCGA-G4-6304-01 8 22034118 22034118 G A BMP1 Missense_Mutation p.R169H 0.11 deleterious(0.02) benign(0.365) TCGA-G4-6304-01 8 22442907 22442907 C T PDLIM2 Nonsense_Mutation p.R429* 0.19 TCGA-G4-6304-01 8 22548883 22548883 G A EGR3 Silent p.F89F 0.11 TCGA-G4-6304-01 8 24350675 24350675 T - ADAM7 Frame_Shift_Del p.L594Yfs*29 0.15 TCGA-G4-6304-01 8 25101274 25101274 G A DOCK5 Splice_Site p.X43_splice 0.09 TCGA-G4-6304-01 8 25250357 25250357 C T DOCK5 Missense_Mutation p.P1496S 0.20 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 8 26435789 26435789 A - DPYSL2 Frame_Shift_Del p.N8Ifs*11 0.11 TCGA-G4-6304-01 8 27168445 27168445 A C TRIM35 Missense_Mutation p.L103R 0.15 deleterious(0.03) benign(0.292) TCGA-G4-6304-01 8 27462779 27462779 T C CLU Missense_Mutation p.E164G 0.11 deleterious(0) probably_damaging(0.954) TCGA-G4-6304-01 8 27913525 27913525 A G NUGGC Missense_Mutation p.M388T 0.10 tolerated(1) benign(0) TCGA-G4-6304-01 8 3076849 3076849 C T CSMD1 Missense_Mutation p.G1534R 0.12 possibly_damaging(0.639) TCGA-G4-6304-01 8 32621484 32621484 A G NRG1 Missense_Mutation p.Q501R 0.09 tolerated(0.2) benign(0.096) TCGA-G4-6304-01 8 39587426 39587426 C T ADAM18 Silent p.S729S 0.08 TCGA-G4-6304-01 8 41476208 41476208 C T AGPAT6 Silent p.D353D 0.09 TCGA-G4-6304-01 8 42693100 42693100 T - THAP1 3'UTR 0.12 TCGA-G4-6304-01 8 48845673 48845673 A T PRKDC Missense_Mutation p.N561K 0.09 benign(0.006) TCGA-G4-6304-01 8 48889384 48889384 C T MCM4 3'UTR 0.08 TCGA-G4-6304-01 8 57080586 57080586 C G PLAG1 Splice_Site p.X81_splice 0.10 TCGA-G4-6304-01 8 59059063 59059063 G A FAM110B Missense_Mutation p.A92T 0.07 tolerated(0.52) benign(0.002) TCGA-G4-6304-01 8 61769310 61769310 C T CHD7 Missense_Mutation p.R2491C 0.07 benign(0.002) TCGA-G4-6304-01 8 68184048 68184048 A C ARFGEF1 Silent p.V487V 0.12 TCGA-G4-6304-01 8 70514026 70514026 T - SULF1 Frame_Shift_Del p.F343Lfs*7 0.09 TCGA-G4-6304-01 8 75274124 75274124 A T GDAP1 Missense_Mutation p.I164F 0.14 tolerated(0.21) probably_damaging(0.991) TCGA-G4-6304-01 8 77766968 77766968 G A ZFHX4 Missense_Mutation p.R2604Q 0.07 possibly_damaging(0.867) TCGA-G4-6304-01 8 8560815 8560815 G A CLDN23 3'UTR 0.12 TCGA-G4-6304-01 8 86114461 86114461 A - E2F5 Frame_Shift_Del p.K107Sfs*11 0.14 TCGA-G4-6304-01 8 87076300 87076300 C T PSKH2 Missense_Mutation p.G249D 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 8 88886172 88886172 C T DCAF4L2 Missense_Mutation p.E10K 0.06 tolerated(0.18) benign(0.02) TCGA-G4-6304-01 8 97156856 97156856 C A GDF6 Missense_Mutation p.A435S 0.08 tolerated(1) possibly_damaging(0.837) TCGA-G4-6304-01 8 99015935 99015935 C T MATN2 Silent p.C417C 0.12 TCGA-G4-6304-01 8 99045816 99045816 A G MATN2 Missense_Mutation p.Q915R 0.14 deleterious_low_confidence(0.04) benign(0.03) TCGA-G4-6304-01 8 99963889 99963889 G A OSR2 Missense_Mutation p.R300Q 0.14 tolerated(0.07) possibly_damaging(0.586) TCGA-G4-6304-01 9 100616550 100616550 C T FOXE1 Silent p.A118A 0.11 TCGA-G4-6304-01 9 104086362 104086363 - T LPPR1 3'UTR 0.15 TCGA-G4-6304-01 9 111693347 111693347 C T IKBKAP Missense_Mutation p.R27Q 0.10 tolerated(0.09) probably_damaging(0.948) TCGA-G4-6304-01 9 113196680 113196680 G A SVEP1 Silent p.V1665V 0.11 TCGA-G4-6304-01 9 113196777 113196777 C T SVEP1 Missense_Mutation p.R1633H 0.11 benign(0.404) TCGA-G4-6304-01 9 114500748 114500748 A G C9orf84 Missense_Mutation p.I346T 0.07 deleterious(0.03) benign(0.229) TCGA-G4-6304-01 9 115648782 115648782 G A SLC46A2 Missense_Mutation p.A443V 0.17 tolerated(1) benign(0.005) TCGA-G4-6304-01 9 116303747 116303747 C G RGS3 Intron 0.13 TCGA-G4-6304-01 9 125004207 125004207 T - RBM18 Frame_Shift_Del p.R177Gfs*21 0.08 TCGA-G4-6304-01 9 128074749 128074749 G A GAPVD1 Missense_Mutation p.R487H 0.11 tolerated(0.05) possibly_damaging(0.895) TCGA-G4-6304-01 9 131295841 131295841 A - GLE1 Frame_Shift_Del p.K455Nfs*31 0.10 TCGA-G4-6304-01 9 131591128 131591128 T C C9orf114 Missense_Mutation p.K32E 0.08 tolerated(0.07) benign(0.003) TCGA-G4-6304-01 9 13186267 13186267 A G MPDZ Splice_Site p.X827_splice 0.14 TCGA-G4-6304-01 9 13186351 13186351 T G MPDZ Missense_Mutation p.E800A 0.15 tolerated(0.11) benign(0.373) TCGA-G4-6304-01 9 132641851 132641851 G T USP20 Splice_Site p.X838_splice 0.10 TCGA-G4-6304-01 9 133760392 133760392 C T ABL1 Silent p.A924A 0.18 TCGA-G4-6304-01 9 133932462 133932462 C T LAMC3 Missense_Mutation p.P696S 0.28 deleterious(0.02) possibly_damaging(0.856) TCGA-G4-6304-01 9 135254481 135254481 A G TTF1 Missense_Mutation p.V810A 0.11 tolerated(0.38) benign(0.001) TCGA-G4-6304-01 9 135985092 135985092 C T RALGDS Missense_Mutation p.A169T 0.11 tolerated(0.61) possibly_damaging(0.724) TCGA-G4-6304-01 9 136136747 136136747 C T ABO RNA 0.09 TCGA-G4-6304-01 9 136652378 136652378 T C VAV2 Missense_Mutation p.H471R 0.11 tolerated(0.66) benign(0.002) TCGA-G4-6304-01 9 137642390 137642390 C - COL5A1 Frame_Shift_Del p.P501Lfs*57 0.10 TCGA-G4-6304-01 9 139701021 139701021 C T CCDC183 Missense_Mutation p.A392V 0.11 tolerated(0.62) benign(0.06) TCGA-G4-6304-01 9 139731904 139731904 G A RABL6 Missense_Mutation p.A307T 0.12 tolerated(0.44) benign(0.008) TCGA-G4-6304-01 9 139820173 139820173 C T TRAF2 Silent p.H442H 0.10 TCGA-G4-6304-01 9 139905942 139905942 C T ABCA2 Missense_Mutation p.V1906M 0.10 deleterious(0) probably_damaging(0.997) TCGA-G4-6304-01 9 139909525 139909525 G - ABCA2 Frame_Shift_Del p.P1241Qfs*6 0.14 TCGA-G4-6304-01 9 139959601 139959601 G A SAPCD2 Missense_Mutation p.R290W 0.08 tolerated(0.1) possibly_damaging(0.773) TCGA-G4-6304-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.17 TCGA-G4-6304-01 9 140669648 140669648 C T EHMT1 Missense_Mutation p.R579W 0.13 deleterious(0) probably_damaging(0.989) TCGA-G4-6304-01 9 140773540 140773540 G A CACNA1B Missense_Mutation p.A107T 0.14 deleterious(0.01) benign(0.002) TCGA-G4-6304-01 9 140881308 140881308 T C CACNA1B Splice_Site p.X658_splice 0.15 TCGA-G4-6304-01 9 21227441 21227441 C A IFNA17 3'UTR 0.19 TCGA-G4-6304-01 9 21854751 21854751 C T MTAP Missense_Mutation p.A191V 0.12 deleterious(0.02) possibly_damaging(0.725) TCGA-G4-6304-01 9 32459429 32459429 T - DDX58 Frame_Shift_Del p.K807Nfs*17 0.08 TCGA-G4-6304-01 9 3247720 3247720 T - RFX3 Intron 0.10 TCGA-G4-6304-01 9 32492508 32492508 C T DDX58 Missense_Mutation p.G151D 0.06 deleterious(0) probably_damaging(0.917) TCGA-G4-6304-01 9 33465323 33465323 C T NOL6 Missense_Mutation p.A855T 0.13 deleterious(0.01) possibly_damaging(0.542) TCGA-G4-6304-01 9 34521490 34521490 A G ENHO Silent p.H68H 0.19 TCGA-G4-6304-01 9 35101557 35101557 C T STOML2 Missense_Mutation p.E149K 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 9 36102113 36102113 A - RECK Frame_Shift_Del p.K442Nfs*27 0.09 TCGA-G4-6304-01 9 36171307 36171307 C T CCIN 3'UTR 0.09 TCGA-G4-6304-01 9 368300 368300 G T DOCK8 Intron 0.12 TCGA-G4-6304-01 9 37919791 37919791 T C SHB 3'UTR 0.10 TCGA-G4-6304-01 9 38615972 38615972 G A ANKRD18A Silent p.C92C 0.09 TCGA-G4-6304-01 9 4117922 4117922 C T GLIS3 Missense_Mutation p.R519Q 0.14 tolerated(0.09) probably_damaging(0.99) TCGA-G4-6304-01 9 42368326 42368326 G A ANKRD20A2 5'UTR 0.15 TCGA-G4-6304-01 9 43816734 43816734 C T CNTNAP3B Silent p.L280L 0.07 TCGA-G4-6304-01 9 5968162 5968162 T - KIAA2026 Frame_Shift_Del p.K690Rfs*3 0.09 TCGA-G4-6304-01 9 71398076 71398076 C T FAM122A 3'UTR 0.12 TCGA-G4-6304-01 9 74349890 74349890 G A TMEM2 Missense_Mutation p.R409W 0.13 deleterious(0.02) benign(0.001) TCGA-G4-6304-01 9 79323753 79323753 G A PRUNE2 Missense_Mutation p.A1146V 0.08 tolerated(0.39) benign(0.055) TCGA-G4-6304-01 9 8331661 8331661 C T PTPRD Missense_Mutation p.G1819R 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6304-01 9 84530907 84530907 T C SPATA31D5P RNA 0.18 TCGA-G4-6304-01 9 8504368 8504368 A G PTPRD Missense_Mutation p.L572P 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 9 92007364 92007364 G A SEMA4D Missense_Mutation p.T199I 0.08 deleterious(0) probably_damaging(0.991) TCGA-G4-6304-01 9 94058320 94058320 G A AUH Missense_Mutation p.A213V 0.10 deleterious(0) probably_damaging(0.996) TCGA-G4-6304-01 9 98231268 98231268 G A PTCH1 Missense_Mutation p.T672M 0.13 tolerated(0.19) probably_damaging(0.978) TCGA-G4-6304-01 9 98278975 98278975 C T RP11-435O5.4 3'Flank 0.16 TCGA-G4-6304-01 9 98766979 98766979 C T ERCC6L2 Missense_Mutation p.R196C 0.14 deleterious(0.04) probably_damaging(0.915) TCGA-G4-6304-01 9 98774570 98774570 T C ERCC6L2 Silent p.H218H 0.10 TCGA-G4-6304-01 9 98774819 98774819 A - ERCC6L2 Frame_Shift_Del p.T303Hfs*50 0.09 TCGA-G4-6304-01 X 100240808 100240808 G A ARL13A Missense_Mutation p.V95I 0.10 deleterious(0.01) probably_damaging(1) TCGA-G4-6304-01 X 10058926 10058926 C T WWC3 Missense_Mutation p.R165W 0.09 deleterious(0.01) benign(0.033) TCGA-G4-6304-01 X 100809344 100809344 T C ARMCX1 3'UTR 0.06 TCGA-G4-6304-01 X 101615548 101615548 C T NXF2B Missense_Mutation p.A619T 0.11 deleterious(0.04) benign(0.294) TCGA-G4-6304-01 X 101910737 101910737 G T GPRASP1 Missense_Mutation p.K632N 0.11 deleterious(0.01) possibly_damaging(0.796) TCGA-G4-6304-01 X 102318049 102318049 G A BEX1 Missense_Mutation p.R52W 0.07 tolerated(0.08) benign(0.052) TCGA-G4-6304-01 X 102885617 102885617 A - TCEAL1 3'UTR 0.14 TCGA-G4-6304-01 X 105452026 105452026 T A MUM1L1 3'UTR 0.14 TCGA-G4-6304-01 X 106845987 106845987 G A FRMPD3 Missense_Mutation p.S1606N 0.19 tolerated(0.08) probably_damaging(0.997) TCGA-G4-6304-01 X 106846364 106846364 A G FRMPD3 Missense_Mutation p.N1732D 0.12 deleterious(0) possibly_damaging(0.567) TCGA-G4-6304-01 X 106871791 106871791 C T PRPS1 5'UTR 0.13 TCGA-G4-6304-01 X 114425438 114425438 G A RBMXL3 Silent p.S478S 0.17 TCGA-G4-6304-01 X 114426146 114426146 C T RBMXL3 Silent p.H714H 0.11 TCGA-G4-6304-01 X 115569069 115569069 G A SLC6A14 Missense_Mutation p.V54M 0.06 deleterious(0) probably_damaging(0.998) TCGA-G4-6304-01 X 117819887 117819887 T - DOCK11 3'UTR 0.16 TCGA-G4-6304-01 X 118109204 118109204 A G LONRF3 Missense_Mutation p.D154G 0.17 deleterious(0) possibly_damaging(0.697) TCGA-G4-6304-01 X 118893018 118893018 C T SOWAHD Missense_Mutation p.R130W 0.16 tolerated(0.17) benign(0.012) TCGA-G4-6304-01 X 119077582 119077582 C G NKAP 5'UTR 0.15 TCGA-G4-6304-01 X 119660665 119660665 T C CUL4B Missense_Mutation p.Y898C 0.06 deleterious(0) probably_damaging(0.988) TCGA-G4-6304-01 X 119669712 119669712 G A CUL4B Silent p.H729H 0.07 TCGA-G4-6304-01 X 122598806 122598806 G A GRIA3 Missense_Mutation p.A723T 0.14 tolerated(0.47) possibly_damaging(0.7) TCGA-G4-6304-01 X 123224811 123224811 C T STAG2 Missense_Mutation p.A1192V 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.476) TCGA-G4-6304-01 X 123654449 123654449 G A TENM1 Silent p.A1073A 0.16 TCGA-G4-6304-01 X 123699348 123699348 C A TENM1 Nonsense_Mutation p.E714* 0.13 TCGA-G4-6304-01 X 130411894 130411894 A G IGSF1 Silent p.T757T 0.10 TCGA-G4-6304-01 X 134155873 134155873 C T FAM127C 3'UTR 0.11 TCGA-G4-6304-01 X 134989561 134989561 A G SAGE1 Missense_Mutation p.I323V 0.09 tolerated(0.1) benign(0) TCGA-G4-6304-01 X 135056154 135056154 C T MMGT1 5'UTR 0.12 TCGA-G4-6304-01 X 137793111 137793111 G A FGF13 Intron 0.14 TCGA-G4-6304-01 X 138713583 138713583 A C MCF2 Missense_Mutation p.C147G 0.09 tolerated(0.11) benign(0.392) TCGA-G4-6304-01 X 1407482 1407482 A G CSF2RA Missense_Mutation p.H97R 0.06 tolerated(0.24) benign(0.147) TCGA-G4-6304-01 X 140993277 140993277 G T MAGEC1 Missense_Mutation p.E29D 0.14 tolerated_low_confidence(0.48) benign(0.217) TCGA-G4-6304-01 X 147027072 147027072 G A FMR1 Missense_Mutation p.R558Q 0.08 tolerated_low_confidence(0.32) probably_damaging(0.946) TCGA-G4-6304-01 X 147063036 147063036 C T FMR1NB Silent p.P38P 0.12 TCGA-G4-6304-01 X 151869485 151869485 C T MAGEA6 Missense_Mutation p.P59S 0.10 tolerated(0.36) benign(0.034) TCGA-G4-6304-01 X 151900189 151900189 G A MAGEA12 Silent p.I204I 0.09 TCGA-G4-6304-01 X 152613134 152613134 C T ZNF275 Intron 0.15 TCGA-G4-6304-01 X 153036965 153036965 G A PLXNB3 Missense_Mutation p.G814D 0.09 deleterious(0.02) probably_damaging(0.937) TCGA-G4-6304-01 X 153048416 153048416 C T SRPK3 Silent p.H197H 0.12 TCGA-G4-6304-01 X 153583264 153583264 G - FLNA Frame_Shift_Del p.Q1716Sfs*23 0.10 TCGA-G4-6304-01 X 153587482 153587482 C T FLNA Silent p.A1448A 0.14 TCGA-G4-6304-01 X 153587721 153587721 T C FLNA Missense_Mutation p.K1399R 0.12 deleterious(0.03) possibly_damaging(0.769) TCGA-G4-6304-01 X 155003987 155003987 C T SPRY3 Missense_Mutation p.R152C 0.11 deleterious(0) probably_damaging(0.987) TCGA-G4-6304-01 X 23953370 23953370 C T CXorf58 Missense_Mutation p.R205C 0.24 deleterious(0) probably_damaging(0.999) TCGA-G4-6304-01 X 25033666 25033666 G A ARX Silent p.A63A 0.08 TCGA-G4-6304-01 X 27766393 27766393 A G DCAF8L2 Missense_Mutation p.K461E 0.11 deleterious(0.02) probably_damaging(0.982) TCGA-G4-6304-01 X 29414505 29414505 C T IL1RAPL1 Missense_Mutation p.R165C 0.09 deleterious(0) benign(0.417) TCGA-G4-6304-01 X 30254671 30254671 G T MAGEB3 Silent p.V210V 0.12 TCGA-G4-6304-01 X 32482749 32482749 G A DMD Missense_Mutation p.A1077V 0.06 probably_damaging(0.961) TCGA-G4-6304-01 X 34150174 34150174 G A FAM47A Silent p.D74D 0.13 TCGA-G4-6304-01 X 39922984 39922984 G A BCOR Nonsense_Mutation p.Q1242* 0.10 TCGA-G4-6304-01 X 44941988 44941988 A - KDM6A Frame_Shift_Del p.T1081Pfs*2 0.13 TCGA-G4-6304-01 X 47070294 47070294 G A UBA1 Silent p.P751P 0.14 TCGA-G4-6304-01 X 47426118 47426118 C T ARAF Missense_Mutation p.T213M 0.07 deleterious(0) benign(0.076) TCGA-G4-6304-01 X 48776073 48776073 G - PIM2 Frame_Shift_Del p.T15Pfs*48 0.15 TCGA-G4-6304-01 X 49063045 49063045 T C CACNA1F Missense_Mutation p.Q1811R 0.12 deleterious(0.05) benign(0.009) TCGA-G4-6304-01 X 53112052 53112052 G - TSPYL2 Frame_Shift_Del p.S127Afs*20 0.13 TCGA-G4-6304-01 X 53117214 53117214 G A TSPYL2 3'UTR 0.12 TCGA-G4-6304-01 X 53430522 53430522 C T SMC1A Missense_Mutation p.R799Q 0.08 tolerated(0.79) benign(0.111) TCGA-G4-6304-01 X 54467207 54467207 C T TSR2 Missense_Mutation p.R56C 0.10 tolerated(0.1) benign(0.013) TCGA-G4-6304-01 X 54817287 54817287 C T ITIH6 Missense_Mutation p.R200H 0.09 tolerated(0.46) benign(0) TCGA-G4-6304-01 X 54839945 54839945 C T MAGED2 Silent p.D411D 0.12 TCGA-G4-6304-01 X 55041426 55041426 G A ALAS2 Silent p.G397G 0.14 TCGA-G4-6304-01 X 63444181 63444181 G A ASB12 3'UTR 0.13 TCGA-G4-6304-01 X 63444286 63444286 C T ASB12 Missense_Mutation p.G296S 0.17 tolerated(0.41) benign(0.012) TCGA-G4-6304-01 X 66943543 66943543 C T AR Missense_Mutation p.H875Y 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-G4-6304-01 X 70361175 70361175 G A MED12 Silent p.Q2121Q 0.13 TCGA-G4-6304-01 X 70469364 70469364 C T ZMYM3 Missense_Mutation p.E473K 0.06 tolerated(0.06) probably_damaging(0.978) TCGA-G4-6304-01 X 70823565 70823565 A G ACRC Silent p.S146S 0.10 TCGA-G4-6304-01 X 71494287 71494287 T C RPS4X Intron 0.13 TCGA-G4-6304-01 X 72347204 72347204 A G NAP1L6 3'UTR 0.30 TCGA-G4-6304-01 X 73814194 73814194 C T RLIM Missense_Mutation p.R67Q 0.11 deleterious(0) unknown(0) TCGA-G4-6304-01 X 74282222 74282222 C T ABCB7 Missense_Mutation p.D627N 0.14 tolerated(0.59) benign(0.003) TCGA-G4-6304-01 X 74494207 74494207 G - UPRT Frame_Shift_Del p.G41Efs*9 0.12 TCGA-G4-6304-01 X 84362919 84362919 C T SATL1 Silent p.P352P 0.07 TCGA-G4-6304-01 X 90691984 90691984 T C PABPC5 3'UTR 0.06 TCGA-G4-6304-01 X 91134265 91134265 C T PCDH11X Missense_Mutation p.T1009I 0.12 deleterious(0.04) benign(0.003) TCGA-G4-6304-01 X 91873370 91873370 G T PCDH11X Missense_Mutation p.D1159Y 0.12 deleterious_low_confidence(0.04) benign(0.002) TCGA-G4-6304-01 X 92928040 92928040 C T NAP1L3 Silent p.R88R 0.18 TCGA-G4-6304-01 X 96212916 96212916 G A DIAPH2 Silent p.A568A 0.11 TCGA-G4-6304-01 X 9659627 9659627 G A TBL1X Missense_Mutation p.A209T 0.12 tolerated(0.61) benign(0.001) TCGA-G4-6304-01 X 99905797 99905797 C T SRPX2 Missense_Mutation p.P33L 0.11 tolerated(0.45) benign(0.002) TCGA-G4-6304-01 X 99919784 99919784 C T SRPX2 Silent p.H123H 0.09 TCGA-G4-6306-01 10 100219428 100219428 C T HPSE2 Missense_Mutation p.R561H 0.17 deleterious(0) possibly_damaging(0.891) TCGA-G4-6306-01 10 100503719 100503719 G T HPSE2 Silent p.S235S 0.12 TCGA-G4-6306-01 10 124909443 124909443 C T HMX2 Missense_Mutation p.S209L 0.43 deleterious(0) probably_damaging(0.974) TCGA-G4-6306-01 10 134752141 134752141 A G TTC40 Missense_Mutation p.L163P 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6306-01 10 45479433 45479433 C T RASSF4 Intron 0.34 TCGA-G4-6306-01 10 5255064 5255064 G A AKR1C4 Missense_Mutation p.R263H 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-G4-6306-01 11 103907586 103907586 C T PDGFD Intron 0.15 TCGA-G4-6306-01 11 129802074 129802074 G A PRDM10 Missense_Mutation p.R404W 0.42 deleterious(0) probably_damaging(0.997) TCGA-G4-6306-01 11 13750437 13750437 T C FAR1 3'UTR 0.15 TCGA-G4-6306-01 11 15243145 15243145 C T INSC Silent p.H361H 0.35 TCGA-G4-6306-01 11 61646235 61646235 C T FADS3 Missense_Mutation p.V203M 0.34 deleterious(0.01) probably_damaging(1) TCGA-G4-6306-01 11 62549652 62549652 G A TAF6L Missense_Mutation p.R225H 0.34 tolerated(0.33) benign(0.018) TCGA-G4-6306-01 11 65545971 65545971 G A AP5B1 Missense_Mutation p.R665W 0.24 deleterious(0) possibly_damaging(0.9) TCGA-G4-6306-01 12 112926888 112926888 G T PTPN11 Missense_Mutation p.G503V 0.90 deleterious(0) probably_damaging(1) TCGA-G4-6306-01 12 119943043 119943043 G A CCDC60 Missense_Mutation p.S273N 0.74 tolerated(0.19) benign(0.006) TCGA-G4-6306-01 12 23696167 23696167 G A SOX5 Silent p.N583N 0.52 TCGA-G4-6306-01 12 52967392 52967392 C T KRT74 Missense_Mutation p.R57Q 0.48 tolerated(0.14) benign(0.014) TCGA-G4-6306-01 12 53165000 53165000 C A KRT76 Missense_Mutation p.A423S 0.22 tolerated(0.34) possibly_damaging(0.759) TCGA-G4-6306-01 12 54379511 54379511 C T HOXC10 Silent p.S156S 0.57 TCGA-G4-6306-01 12 78513594 78513594 C T NAV3 Silent p.V1206V 0.58 TCGA-G4-6306-01 12 78573445 78573445 G A NAV3 Missense_Mutation p.A1812T 0.33 tolerated(0.23) possibly_damaging(0.514) TCGA-G4-6306-01 12 88379731 88379731 G C C12orf50 Missense_Mutation p.A341G 0.13 deleterious(0.02) benign(0.281) TCGA-G4-6306-01 13 36429711 36429711 G A DCLK1 Intron 0.19 TCGA-G4-6306-01 13 60240964 60240964 C A DIAPH3 Missense_Mutation p.Q1112H 0.20 tolerated_low_confidence(0.16) benign(0.003) TCGA-G4-6306-01 13 76429492 76429492 G A LMO7 Intron 0.18 TCGA-G4-6306-01 14 37153966 37153966 T C SLC25A21 Silent p.T256T 0.38 TCGA-G4-6306-01 14 51224641 51224641 C A NIN Missense_Mutation p.C1036F 0.17 tolerated(0.48) possibly_damaging(0.724) TCGA-G4-6306-01 14 92597338 92597338 A G CPSF2 Missense_Mutation p.I4V 0.37 tolerated(0.06) possibly_damaging(0.638) TCGA-G4-6306-01 14 94100953 94100953 G A UNC79 Missense_Mutation p.A1758T 0.33 deleterious_low_confidence(0.02) benign(0.015) TCGA-G4-6306-01 15 28370178 28370178 C T HERC2 Missense_Mutation p.A4322T 0.38 benign(0.001) TCGA-G4-6306-01 15 28441478 28441478 G A HERC2 Missense_Mutation p.P2715S 0.23 probably_damaging(0.997) TCGA-G4-6306-01 15 54860124 54860124 A G UNC13C Missense_Mutation p.I2029V 0.41 tolerated_low_confidence(1) possibly_damaging(0.472) TCGA-G4-6306-01 15 64495288 64495288 C T CSNK1G1 Missense_Mutation p.R367Q 0.31 tolerated(0.11) possibly_damaging(0.561) TCGA-G4-6306-01 16 10273963 10273963 G A GRIN2A Silent p.D102D 0.20 TCGA-G4-6306-01 16 15661874 15661874 G A C16orf45 Missense_Mutation p.D89N 0.54 tolerated(0.46) benign(0.003) TCGA-G4-6306-01 16 21216799 21216799 T C ZP2 Missense_Mutation p.D212G 0.25 deleterious(0.02) benign(0.216) TCGA-G4-6306-01 16 29824645 29824645 C A PRRT2 Missense_Mutation p.S90R 0.51 deleterious_low_confidence(0) benign(0.386) TCGA-G4-6306-01 16 29824646 29824646 C A PRRT2 Missense_Mutation p.P91T 0.53 deleterious_low_confidence(0.03) possibly_damaging(0.453) TCGA-G4-6306-01 16 67691944 67691944 G A ACD Missense_Mutation p.P470L 0.49 tolerated(0.09) benign(0.008) TCGA-G4-6306-01 16 71894270 71894270 C A ZNF821 Missense_Mutation p.R297L 0.49 tolerated(0.24) probably_damaging(0.998) TCGA-G4-6306-01 16 86614922 86614922 G A FOXL1 3'UTR 0.20 TCGA-G4-6306-01 17 10543464 10543464 G A MYH3 Missense_Mutation p.A844V 0.52 tolerated(0.11) benign(0.001) TCGA-G4-6306-01 17 2861055 2861055 G A RAP1GAP2 Silent p.S56S 0.61 TCGA-G4-6306-01 17 37762521 37762521 A G NEUROD2 Missense_Mutation p.M111T 0.39 deleterious(0.04) probably_damaging(0.942) TCGA-G4-6306-01 17 47797210 47797210 C A FAM117A Missense_Mutation p.S207I 0.48 tolerated(0.06) probably_damaging(0.986) TCGA-G4-6306-01 17 55945584 55945587 CAAA - CUEDC1 Frame_Shift_Del p.F320Nfs*12 0.31 TCGA-G4-6306-01 17 64641505 64641505 C T PRKCA Silent p.C135C 0.32 TCGA-G4-6306-01 17 70120341 70120342 CC - SOX9 Frame_Shift_Del p.S448* 0.36 TCGA-G4-6306-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.70 tolerated(0.11) benign(0.308) TCGA-G4-6306-01 17 78220412 78220412 G A SLC26A11 Missense_Mutation p.D420N 0.26 deleterious(0) benign(0.386) TCGA-G4-6306-01 18 3534241 3534241 C T DLGAP1 Nonsense_Mutation p.W810* 0.33 TCGA-G4-6306-01 18 55362456 55362456 C T ATP8B1 Missense_Mutation p.R296H 0.58 deleterious(0) probably_damaging(0.991) TCGA-G4-6306-01 18 76755014 76755014 C T SALL3 Missense_Mutation p.A1008V 0.47 deleterious(0.04) benign(0.265) TCGA-G4-6306-01 18 8784095 8784095 G A SOGA2 Missense_Mutation p.G329R 0.40 tolerated(0.06) possibly_damaging(0.46) TCGA-G4-6306-01 19 15733041 15733041 C T CYP4F8 Intron 0.42 TCGA-G4-6306-01 19 23542726 23542726 C A ZNF91 Nonsense_Mutation p.E1019* 0.38 TCGA-G4-6306-01 19 3638905 3638905 C T PIP5K1C Missense_Mutation p.A633T 0.33 tolerated_low_confidence(0.21) benign(0.004) TCGA-G4-6306-01 19 37266959 37266959 C T CTD-2162K18.4 3'UTR 0.26 TCGA-G4-6306-01 19 39914136 39914136 G A PLEKHG2 Silent p.A814A 0.33 TCGA-G4-6306-01 19 50333817 50333817 A G MED25 Missense_Mutation p.E290G 0.42 deleterious(0) probably_damaging(0.982) TCGA-G4-6306-01 19 51628275 51628275 C T SIGLEC9 Missense_Mutation p.A15V 0.21 tolerated(0.19) benign(0) TCGA-G4-6306-01 19 53057758 53057758 G A ZNF808 Missense_Mutation p.R530H 0.29 tolerated(0.16) possibly_damaging(0.812) TCGA-G4-6306-01 19 53219167 53219167 C G ZNF611 Splice_Site 0.23 TCGA-G4-6306-01 19 57176274 57176274 C T ZNF835 Missense_Mutation p.R98H 0.37 tolerated(0.16) benign(0.142) TCGA-G4-6306-01 19 9299011 9299011 G A OR7D2 3'UTR 0.58 TCGA-G4-6306-01 1 120165751 120165751 G A ZNF697 Silent p.G405G 0.44 TCGA-G4-6306-01 1 151110581 151110581 T C SEMA6C Missense_Mutation p.E183G 0.12 tolerated(0.69) possibly_damaging(0.607) TCGA-G4-6306-01 1 157665283 157665283 C A FCRL3 Missense_Mutation p.R416L 0.38 tolerated(0.12) benign(0.088) TCGA-G4-6306-01 1 163042204 163042204 C T RGS4 Missense_Mutation p.R119W 0.32 deleterious(0) probably_damaging(0.965) TCGA-G4-6306-01 1 167096378 167096378 C T DUSP27 Silent p.S670S 0.10 TCGA-G4-6306-01 1 201980352 201980352 C - ELF3 Frame_Shift_Del p.P31Lfs*12 0.29 TCGA-G4-6306-01 1 247587253 247587253 C T NLRP3 Nonsense_Mutation p.R170* 0.38 TCGA-G4-6306-01 1 247978438 247978438 G T OR14A16 Silent p.I198I 0.44 TCGA-G4-6306-01 20 44869782 44869782 G A CDH22 Missense_Mutation p.R124C 0.14 deleterious(0) probably_damaging(0.998) TCGA-G4-6306-01 20 55027486 55027486 C T CASS4 Silent p.T418T 0.73 TCGA-G4-6306-01 21 10973763 10973763 C A TPTE 5'UTR 0.15 TCGA-G4-6306-01 21 33721619 33721619 A C URB1 Missense_Mutation p.N1002K 0.38 tolerated(0.74) benign(0.011) TCGA-G4-6306-01 22 36901966 36901966 C A FOXRED2 Missense_Mutation p.Q168H 0.12 tolerated(0.13) benign(0.151) TCGA-G4-6306-01 22 36901967 36901967 T C FOXRED2 Missense_Mutation p.Q168R 0.13 deleterious(0.03) benign(0.151) TCGA-G4-6306-01 22 40804998 40804998 G A SGSM3 Missense_Mutation p.R655H 0.40 deleterious(0) probably_damaging(1) TCGA-G4-6306-01 22 46760531 46760531 G T CELSR1 Missense_Mutation p.T2886N 0.32 tolerated(0.09) probably_damaging(0.999) TCGA-G4-6306-01 2 132558472 132558472 C G C2orf27B Missense_Mutation p.E13D 0.39 tolerated_low_confidence(0.09) benign(0) TCGA-G4-6306-01 2 137872775 137872775 G A THSD7B Silent p.T427T 0.32 TCGA-G4-6306-01 2 166152492 166152492 C A SCN2A Missense_Mutation p.N53K 0.34 tolerated(0.09) possibly_damaging(0.615) TCGA-G4-6306-01 2 174940100 174940100 T A OLA1 3'UTR 0.38 TCGA-G4-6306-01 2 179460379 179460379 C A TTN Silent p.V19234V 0.38 TCGA-G4-6306-01 2 179595649 179595649 A G TTN Intron 0.33 TCGA-G4-6306-01 2 189933585 189933585 C T COL5A2 Missense_Mutation p.R395Q 0.35 probably_damaging(0.957) TCGA-G4-6306-01 2 207170185 207170190 TAAAAC - ZDBF2 In_Frame_Del p.K312_T313del 0.32 TCGA-G4-6306-01 2 27424538 27424540 AGA - SLC5A6 In_Frame_Del p.F513del 0.35 TCGA-G4-6306-01 2 71209123 71209123 C T ANKRD53 Silent p.D225D 0.36 TCGA-G4-6306-01 3 10105564 10105564 T C FANCD2 Missense_Mutation p.I639T 0.11 deleterious(0) probably_damaging(0.967) TCGA-G4-6306-01 3 119336999 119336999 C A PLA1A Nonsense_Mutation p.C296* 0.34 TCGA-G4-6306-01 3 124398310 124398310 G A KALRN Silent p.T744T 0.34 TCGA-G4-6306-01 3 125826049 125826049 G A ALDH1L1 Silent p.D806D 0.32 TCGA-G4-6306-01 3 132360863 132360863 G A ACAD11 Silent p.L164L 0.36 TCGA-G4-6306-01 3 134644716 134644716 G A EPHB1 Silent p.A39A 0.30 TCGA-G4-6306-01 3 192125880 192125880 C T FGF12 Missense_Mutation p.V45I 0.39 tolerated(0.93) benign(0.001) TCGA-G4-6306-01 3 3081602 3081602 C T CNTN4 Intron 0.20 TCGA-G4-6306-01 3 35763246 35763246 C T ARPP21 Missense_Mutation p.A348V 0.27 deleterious(0) possibly_damaging(0.776) TCGA-G4-6306-01 3 52559075 52559075 G A NT5DC2 Silent p.P417P 0.21 TCGA-G4-6306-01 3 54537569 54537569 T A CACNA2D3 Missense_Mutation p.N144K 0.29 tolerated(0.07) benign(0.078) TCGA-G4-6306-01 4 38933982 38933982 A G FAM114A1 Missense_Mutation p.K484E 0.32 deleterious(0.04) benign(0.089) TCGA-G4-6306-01 4 68692989 68692989 T G TMPRSS11D Missense_Mutation p.Q314H 0.27 tolerated(0.06) benign(0.01) TCGA-G4-6306-01 4 68693225 68693225 G A TMPRSS11D Missense_Mutation p.R236C 0.40 deleterious(0.02) probably_damaging(0.939) TCGA-G4-6306-01 5 11098804 11098804 C A CTNND2 Missense_Mutation p.M840I 0.38 deleterious(0) possibly_damaging(0.744) TCGA-G4-6306-01 5 112170822 112170822 C T APC Missense_Mutation p.R640W 0.37 probably_damaging(0.999) TCGA-G4-6306-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.34 TCGA-G4-6306-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.45 TCGA-G4-6306-01 5 139865203 139865203 A G ANKHD1 Silent p.A676A 0.40 TCGA-G4-6306-01 5 140221620 140221620 T C PCDHA8 Silent p.N238N 0.42 TCGA-G4-6306-01 5 140257221 140257221 C T PCDHA12 Missense_Mutation p.R722C 0.39 deleterious_low_confidence(0) possibly_damaging(0.518) TCGA-G4-6306-01 5 140723685 140723685 G A PCDHGA3 Missense_Mutation p.G29S 0.40 tolerated_low_confidence(0.09) possibly_damaging(0.547) TCGA-G4-6306-01 5 140769477 140769477 C T PCDHGB4 Missense_Mutation p.R676C 0.45 tolerated(0.13) possibly_damaging(0.485) TCGA-G4-6306-01 5 156809609 156809609 G T CYFIP2 Missense_Mutation p.E991D 0.32 tolerated(0.12) possibly_damaging(0.823) TCGA-G4-6306-01 5 176318431 176318431 G A HK3 Missense_Mutation p.R73W 0.39 deleterious(0) probably_damaging(0.946) TCGA-G4-6306-01 5 179729545 179729545 T C GFPT2 Missense_Mutation p.S628G 0.26 tolerated(0.43) benign(0.002) TCGA-G4-6306-01 5 192471 192471 G A LRRC14B Missense_Mutation p.R273Q 0.10 tolerated(0.54) benign(0.002) TCGA-G4-6306-01 5 76249881 76249881 G A CRHBP Missense_Mutation p.G68D 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-G4-6306-01 6 33371805 33371805 C T KIFC1 Missense_Mutation p.R219W 0.44 tolerated(0.09) benign(0.001) TCGA-G4-6306-01 6 38690610 38690610 G A DNAH8 5'Flank 0.35 TCGA-G4-6306-01 6 49754492 49754492 C A PGK2 Nonsense_Mutation p.G137* 0.33 TCGA-G4-6306-01 6 69943294 69943294 C A BAI3 Missense_Mutation p.Q865K 0.25 tolerated(0.93) probably_damaging(0.93) TCGA-G4-6306-01 6 89858998 89858998 A T PM20D2 Silent p.G160G 0.45 TCGA-G4-6306-01 7 102743640 102743640 T G NAPEPLD 3'UTR 0.35 TCGA-G4-6306-01 7 106508792 106508792 C T PIK3CG Silent p.P262P 0.26 TCGA-G4-6306-01 7 143929694 143929694 C T OR2A42 Silent p.L81L 0.14 TCGA-G4-6306-01 7 150746465 150746465 C T ASIC3 Missense_Mutation p.R165C 0.28 deleterious(0.01) possibly_damaging(0.886) TCGA-G4-6306-01 7 37354507 37354507 C A ELMO1 Nonsense_Mutation p.E47* 0.19 TCGA-G4-6306-01 7 42004906 42004906 C T GLI3 Silent p.G1255G 0.58 TCGA-G4-6306-01 7 43484505 43484505 G A HECW1 Silent p.A578A 0.23 TCGA-G4-6306-01 7 98533269 98533269 C T TRRAP Missense_Mutation p.S1361L 0.09 benign(0.042) TCGA-G4-6306-01 7 99045806 99045806 C T CPSF4 Missense_Mutation p.R73C 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6306-01 8 143607953 143607953 C T BAI1 Silent p.D1121D 0.71 TCGA-G4-6306-01 8 15480646 15480646 T G TUSC3 Missense_Mutation p.F66V 0.75 tolerated(0.17) benign(0.001) TCGA-G4-6306-01 8 42587226 42587226 C T CHRNB3 Missense_Mutation p.S259L 0.04 deleterious(0) probably_damaging(1) TCGA-G4-6306-01 8 48511574 48511574 C T SPIDR Missense_Mutation p.R454C 0.18 tolerated(0.22) benign(0.01) TCGA-G4-6306-01 8 72969207 72969207 T C TRPA1 Missense_Mutation p.H380R 0.06 deleterious(0) benign(0.305) TCGA-G4-6306-01 8 87917354 87917354 G T CNBD1 Missense_Mutation p.K68N 0.07 tolerated(0.08) possibly_damaging(0.873) TCGA-G4-6306-01 8 99054047 99054047 T C RPL30 Silent p.E110E 0.08 TCGA-G4-6306-01 9 123667478 123667478 G A TRAF1 Silent p.H357H 0.35 TCGA-G4-6306-01 9 124073097 124073097 G A GSN Missense_Mutation p.D214N 0.27 deleterious(0) probably_damaging(0.993) TCGA-G4-6306-01 9 131776739 131776739 G A SH3GLB2 Missense_Mutation p.A171V 0.09 tolerated(0.06) benign(0.119) TCGA-G4-6306-01 9 139417423 139417423 G A NOTCH1 Silent p.R207R 0.38 TCGA-G4-6306-01 9 21201698 21201698 T C IFNA7 Missense_Mutation p.E156G 0.34 deleterious(0.01) benign(0.279) TCGA-G4-6306-01 9 33466082 33466082 G A NOL6 Missense_Mutation p.T784M 0.29 tolerated(0.09) possibly_damaging(0.455) TCGA-G4-6306-01 9 34521660 34521660 C T ENHO Missense_Mutation p.A12T 0.32 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-G4-6306-01 9 43685316 43685316 G A CNTNAP3B Missense_Mutation p.V8I 0.41 tolerated(0.53) unknown(0) TCGA-G4-6306-01 9 90264851 90264851 C T DAPK1 Silent p.L482L 0.38 TCGA-G4-6306-01 X 101409252 101409252 C A BEX5 5'UTR 0.76 TCGA-G4-6306-01 X 12735218 12735218 C T FRMPD4 Silent p.S880S 0.79 TCGA-G4-6306-01 X 136649470 136649470 C T ZIC3 Missense_Mutation p.T207M 0.94 tolerated(0.06) probably_damaging(0.925) TCGA-G4-6306-01 X 148048383 148048383 A G AFF2 Missense_Mutation p.T993A 0.20 tolerated(0.17) benign(0.069) TCGA-G4-6306-01 X 153880469 153880469 C A CTAG2 3'UTR 0.80 TCGA-G4-6306-01 X 153906456 153906456 C G GAB3 Nonstop_Mutation p.*588Sext*54 0.26 TCGA-G4-6306-01 Y 6115428 6115428 T C TSPY2 Missense_Mutation p.I173T 0.69 tolerated(0.07) possibly_damaging(0.525) TCGA-G4-6307-01 10 29821683 29821683 G A SVIL Missense_Mutation p.S538L 0.32 deleterious(0.03) benign(0.002) TCGA-G4-6307-01 10 33135386 33135386 G A C10ORF68 Silent p.Q472Q 0.38 TCGA-G4-6307-01 10 49986810 49986810 C T WDFY4 Silent p.S1110S 0.37 TCGA-G4-6307-01 11 117342684 117342684 G T DSCAML1 Missense_Mutation p.D1011E 0.18 tolerated(0.24) benign(0.073) TCGA-G4-6307-01 11 118527589 118527589 A G PHLDB1 3'UTR 0.11 TCGA-G4-6307-01 11 11964336 11964336 G A USP47 Missense_Mutation p.R855Q 0.40 tolerated(0.11) probably_damaging(0.922) TCGA-G4-6307-01 11 14287164 14287164 C G RP11-21L19.1 Intron 0.21 TCGA-G4-6307-01 11 30900219 30900219 C G DCDC1 Missense_Mutation p.R1755T 0.19 deleterious(0) benign(0.402) TCGA-G4-6307-01 11 59282549 59282549 T G OR4D9 Missense_Mutation p.L55R 0.06 deleterious(0) probably_damaging(1) TCGA-G4-6307-01 11 6588189 6588189 G A DNHD1 Missense_Mutation p.R3817Q 0.22 probably_damaging(0.997) TCGA-G4-6307-01 11 67219164 67219164 C T GPR152 Silent p.P344P 0.44 TCGA-G4-6307-01 11 78413031 78413031 C A TENM4 Missense_Mutation p.A1543S 0.42 deleterious(0.02) possibly_damaging(0.597) TCGA-G4-6307-01 12 49087004 49087004 G T CCNT1 Missense_Mutation p.H665N 0.23 tolerated(0.3) benign(0.005) TCGA-G4-6307-01 12 53609169 53609169 C T RARG Missense_Mutation p.R128H 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-G4-6307-01 12 64879256 64879256 C T TBK1 Missense_Mutation p.P404L 0.09 deleterious(0) benign(0.33) TCGA-G4-6307-01 13 109438060 109438060 C T MYO16 Silent p.S173S 0.17 TCGA-G4-6307-01 14 107048701 107048701 C T IGHV3-53 Missense_Mutation p.E107K 0.19 deleterious_low_confidence(0.02) benign(0.109) TCGA-G4-6307-01 14 60574549 60574549 G A PCNXL4 Intron 0.50 TCGA-G4-6307-01 14 92435876 92435876 A G TRIP11 3'UTR 0.31 TCGA-G4-6307-01 15 66853377 66853377 G A LCTL Silent p.T224T 0.29 TCGA-G4-6307-01 15 89169550 89169550 A G AEN Missense_Mutation p.H37R 0.10 deleterious(0) possibly_damaging(0.69) TCGA-G4-6307-01 16 57546574 57546574 C T CCDC102A 3'UTR 0.13 TCGA-G4-6307-01 17 30228623 30228623 G A UTP6 Silent p.R8R 0.15 TCGA-G4-6307-01 17 68175812 68175812 A C KCNJ2 3'UTR 0.06 TCGA-G4-6307-01 17 7577506 7577506 C A TP53 Missense_Mutation p.D259Y 0.76 deleterious(0.02) probably_damaging(0.996) TCGA-G4-6307-01 18 21107820 21107820 C T C18orf8 Silent p.N417N 0.38 TCGA-G4-6307-01 18 44140161 44140161 C T LOXHD1 5'Flank 0.34 TCGA-G4-6307-01 19 1466345 1466345 C T APC2 Silent p.P1015P 0.18 TCGA-G4-6307-01 19 35801484 35801484 C T MAG Silent p.G518G 0.57 TCGA-G4-6307-01 19 41009884 41009884 C T SPTBN4 Missense_Mutation p.R504W 0.22 deleterious(0) probably_damaging(0.954) TCGA-G4-6307-01 19 42301735 42301735 C T CEACAM3 Silent p.A93A 0.51 TCGA-G4-6307-01 19 45754854 45754854 C T MARK4 Missense_Mutation p.S3L 0.40 tolerated_low_confidence(0.11) benign(0.003) TCGA-G4-6307-01 19 46206386 46206386 G A QPCTL 3'UTR 0.17 TCGA-G4-6307-01 19 4793886 4793886 A G FEM1A 3'UTR 0.47 TCGA-G4-6307-01 19 50305335 50305335 A G AP2A1 Missense_Mutation p.D684G 0.29 tolerated(0.06) possibly_damaging(0.811) TCGA-G4-6307-01 19 58132601 58132601 T A ZNF134 Missense_Mutation p.F372I 0.12 tolerated(0.05) probably_damaging(0.998) TCGA-G4-6307-01 19 9067923 9067923 G T MUC16 Missense_Mutation p.T6508N 0.25 unknown(0) TCGA-G4-6307-01 1 101200219 101200219 G A VCAM1 Missense_Mutation p.A652T 0.14 tolerated(0.86) benign(0.074) TCGA-G4-6307-01 1 115537683 115537683 C G SYCP1 3'UTR 0.28 TCGA-G4-6307-01 1 159273829 159273829 A C FCER1A Missense_Mutation p.K63T 0.06 tolerated(0.46) benign(0.201) TCGA-G4-6307-01 1 208215540 208215540 G A PLXNA2 Missense_Mutation p.R1397C 0.57 deleterious(0) possibly_damaging(0.541) TCGA-G4-6307-01 1 22846766 22846766 C T ZBTB40 Nonsense_Mutation p.Q1016* 0.30 TCGA-G4-6307-01 1 231488433 231488434 - TAC SPRTN In_Frame_Ins p.L266dup 0.31 TCGA-G4-6307-01 1 236208775 236208775 G C NID1 Nonsense_Mutation p.S245* 0.26 TCGA-G4-6307-01 1 34006244 34006244 T C CSMD2 Missense_Mutation p.D3027G 0.18 deleterious(0.03) probably_damaging(0.986) TCGA-G4-6307-01 1 34006245 34006245 C A CSMD2 Missense_Mutation p.D3027Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-G4-6307-01 1 3662330 3662330 C T TP73-AS1 RNA 0.58 TCGA-G4-6307-01 1 47284368 47284368 G A CYP4B1 Missense_Mutation p.R474H 0.43 tolerated(0.19) benign(0.02) TCGA-G4-6307-01 1 57333327 57333327 G T C8A Silent p.L41L 0.28 TCGA-G4-6307-01 20 30602783 30602783 G A CCM2L Missense_Mutation p.R36H 0.53 deleterious(0) probably_damaging(0.999) TCGA-G4-6307-01 20 43850370 43850370 C T SEMG2 Missense_Mutation p.P33S 0.07 tolerated(0.14) probably_damaging(0.992) TCGA-G4-6307-01 20 52561294 52561294 G A BCAS1 3'UTR 0.17 TCGA-G4-6307-01 20 60709635 60709635 G A LSM14B 3'UTR 0.27 TCGA-G4-6307-01 22 45929715 45929715 C T FBLN1 Missense_Mutation p.R241C 0.45 deleterious(0) probably_damaging(0.965) TCGA-G4-6307-01 2 120060102 120060102 G A C2orf76 Silent p.F109F 0.23 TCGA-G4-6307-01 2 141232882 141232882 G A LRP1B Silent p.C3150C 0.18 TCGA-G4-6307-01 2 179430951 179430951 C A TTN Missense_Mutation p.K26636N 0.22 TCGA-G4-6307-01 2 220089547 220089547 T C ATG9A Silent p.E182E 0.77 TCGA-G4-6307-01 2 27459367 27459367 C G CAD Missense_Mutation p.I1430M 0.08 deleterious(0.01) probably_damaging(0.923) TCGA-G4-6307-01 2 33952673 33952673 C T AC009499.1 Intron 0.35 TCGA-G4-6307-01 2 54876987 54876987 A G SPTBN1 Missense_Mutation p.D1813G 0.75 tolerated(0.05) benign(0.295) TCGA-G4-6307-01 2 74699813 74699813 G A MRPL53 5'UTR 0.77 TCGA-G4-6307-01 3 118623625 118623625 G C IGSF11 Missense_Mutation p.L242V 0.26 tolerated(0.59) benign(0.024) TCGA-G4-6307-01 3 122928030 122928030 G T SEC22A 5'UTR 0.56 TCGA-G4-6307-01 3 12475603 12475603 C T PPARG Missense_Mutation p.L493F 0.26 deleterious(0) probably_damaging(0.998) TCGA-G4-6307-01 3 134968201 134968201 G A EPHB1 Missense_Mutation p.R905H 0.26 tolerated(0.16) benign(0.028) TCGA-G4-6307-01 3 137781712 137781712 C A DZIP1L Missense_Mutation p.E750D 0.21 tolerated(0.08) benign(0.014) TCGA-G4-6307-01 3 140251259 140251259 G T CLSTN2 Missense_Mutation p.V480L 0.30 deleterious(0) possibly_damaging(0.897) TCGA-G4-6307-01 3 15287176 15287176 C T CAPN7 Missense_Mutation p.R670W 0.53 deleterious(0) probably_damaging(0.997) TCGA-G4-6307-01 3 193382673 193382673 A C OPA1 Missense_Mutation p.K871T 0.24 deleterious(0.04) benign(0.118) TCGA-G4-6307-01 3 193382709 193382709 T G OPA1 Nonsense_Mutation p.L883* 0.23 TCGA-G4-6307-01 3 193382753 193382753 T C OPA1 Missense_Mutation p.Y898H 0.20 deleterious(0.05) possibly_damaging(0.514) TCGA-G4-6307-01 3 193382759 193382759 T C OPA1 Missense_Mutation p.Y900H 0.20 tolerated(0.07) benign(0.414) TCGA-G4-6307-01 3 51273836 51273836 G A DOCK3 Missense_Mutation p.G660S 0.42 tolerated(0.52) probably_damaging(0.999) TCGA-G4-6307-01 3 53263351 53263351 G A TKT Silent p.A411A 0.06 TCGA-G4-6307-01 3 53925935 53925935 G A SELK 5'UTR 0.33 TCGA-G4-6307-01 3 56717004 56717004 G C FAM208A Missense_Mutation p.Q11E 0.21 deleterious_low_confidence(0.05) benign(0.009) TCGA-G4-6307-01 3 64582669 64582669 T C ADAMTS9 Splice_Site p.X1340_splice 0.09 TCGA-G4-6307-01 3 9832966 9832966 C T TADA3 Missense_Mutation p.R62H 0.33 deleterious(0.01) probably_damaging(0.974) TCGA-G4-6307-01 4 169336569 169336569 G A DDX60L Missense_Mutation p.T990M 0.38 deleterious(0) probably_damaging(0.999) TCGA-G4-6307-01 4 5448495 5448495 C T STK32B Missense_Mutation p.R220W 0.51 deleterious(0) probably_damaging(0.956) TCGA-G4-6307-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.48 TCGA-G4-6307-01 5 140021985 140021985 C T TMCO6 Missense_Mutation p.A195V 0.29 tolerated(0.45) possibly_damaging(0.841) TCGA-G4-6307-01 6 160998233 160998233 G T LPA Silent p.T1522T 0.28 TCGA-G4-6307-01 6 29012859 29012859 C T OR2W1 Missense_Mutation p.A32T 0.51 tolerated(0.17) benign(0.002) TCGA-G4-6307-01 6 32155740 32155740 C T PBX2 Intron 0.22 TCGA-G4-6307-01 6 36995311 36995311 G A FGD2 Missense_Mutation p.R571Q 0.30 tolerated(0.42) benign(0.004) TCGA-G4-6307-01 6 57246919 57246919 G A PRIM2 Missense_Mutation p.A216T 0.08 tolerated(0.57) benign(0.006) TCGA-G4-6307-01 6 73904416 73904416 C T KCNQ5 Missense_Mutation p.T712M 0.52 deleterious(0) possibly_damaging(0.891) TCGA-G4-6307-01 6 99893939 99893939 C T USP45 Missense_Mutation p.G570E 0.17 tolerated(0.51) benign(0.02) TCGA-G4-6307-01 7 133861771 133861771 C T LRGUK Nonsense_Mutation p.R355* 0.40 TCGA-G4-6307-01 7 135333406 135333406 T C NUP205 3'UTR 0.36 TCGA-G4-6307-01 7 14722380 14722380 C A DGKB Missense_Mutation p.D306Y 0.10 deleterious(0.01) possibly_damaging(0.492) TCGA-G4-6307-01 7 2978352 2978352 C A CARD11 Silent p.L326L 0.45 TCGA-G4-6307-01 7 45717805 45717805 T G ADCY1 Missense_Mutation p.V614G 0.05 tolerated(0.23) benign(0.342) TCGA-G4-6307-01 7 45717806 45717806 C T ADCY1 Silent p.V614V 0.05 TCGA-G4-6307-01 8 103292625 103292625 G C UBR5 Missense_Mutation p.Q2000E 0.08 tolerated(1) benign(0.334) TCGA-G4-6307-01 8 105001615 105001615 G T RIMS2 Missense_Mutation p.V1004F 0.11 tolerated_low_confidence(0.7) benign(0.123) TCGA-G4-6307-01 8 22105767 22105767 C A POLR3D Silent p.I154I 0.22 TCGA-G4-6307-01 8 26237990 26237990 C G BNIP3L 5'Flank 0.22 TCGA-G4-6307-01 8 27957423 27957423 T A ELP3 Silent p.P66P 0.76 TCGA-G4-6307-01 8 63492147 63492147 C T NKAIN3 Missense_Mutation p.A35V 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-G4-6307-01 9 135374785 135374785 C A C9orf171 Missense_Mutation p.Q144K 0.22 tolerated(1) benign(0.255) TCGA-G4-6307-01 9 34971348 34971348 G C KIAA1045 Missense_Mutation p.S18T 0.10 tolerated(0.13) benign(0.013) TCGA-G4-6307-01 9 37015106 37015106 C T PAX5 Missense_Mutation p.A100T 0.21 deleterious(0.01) benign(0.193) TCGA-G4-6307-01 X 132548981 132548981 C T GPC4 Missense_Mutation p.G5S 0.53 tolerated(0.28) benign(0.006) TCGA-G4-6307-01 X 134421216 134421216 G T ZNF75D Silent p.S462S 0.18 TCGA-G4-6307-01 X 151870625 151870625 G C MAGEA6 3'UTR 0.10 TCGA-G4-6307-01 X 1585334 1585334 C A P2RY8 Missense_Mutation p.G40C 0.13 tolerated(0.11) benign(0.398) TCGA-G4-6307-01 X 32456418 32456418 A T DMD Missense_Mutation p.D1337E 0.20 possibly_damaging(0.893) TCGA-G4-6307-01 X 32459327 32459327 G A DMD Silent p.G1297G 0.05 TCGA-G4-6307-01 X 3248742 3248742 G A MXRA5 Silent p.H87H 0.40 TCGA-G4-6307-01 X 34962057 34962057 C A FAM47B Missense_Mutation p.T370K 0.33 tolerated(0.98) benign(0.022) TCGA-G4-6307-01 X 40569253 40569253 T A MED14 Missense_Mutation p.K384I 0.22 tolerated(0.06) benign(0.003) TCGA-G4-6307-01 X 49068718 49068718 G A CACNA1F Silent p.A1342A 0.40 TCGA-G4-6309-01 10 104174744 104174744 G A PSD Missense_Mutation p.R334W 0.39 deleterious(0) benign(0.306) TCGA-G4-6309-01 10 105164836 105164836 A C PDCD11 Missense_Mutation p.S154R 0.26 deleterious(0.04) benign(0.008) TCGA-G4-6309-01 10 105238851 105238851 C A CALHM3 5'UTR 0.20 TCGA-G4-6309-01 10 105330835 105330835 C T NEURL1 Missense_Mutation p.R98C 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 10 108357186 108357186 G A SORCS1 Missense_Mutation p.T1063M 0.34 deleterious(0.02) possibly_damaging(0.493) TCGA-G4-6309-01 10 112837878 112837878 C A ADRA2A Missense_Mutation p.P42T 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6309-01 10 11330411 11330411 C T CELF2 Missense_Mutation p.A291V 0.20 tolerated(0.17) probably_damaging(0.97) TCGA-G4-6309-01 10 118434898 118434898 G T HSPA12A Silent p.T474T 0.37 TCGA-G4-6309-01 10 118466730 118466730 A G HSPA12A Missense_Mutation p.L36P 0.50 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-G4-6309-01 10 118639412 118639412 G - ENO4 Frame_Shift_Del p.G231Vfs*8 0.30 TCGA-G4-6309-01 10 118681002 118681002 G A KIAA1598 Nonsense_Mutation p.R380* 0.43 TCGA-G4-6309-01 10 120354549 120354549 C T PRLHR Missense_Mutation p.V70M 0.44 deleterious(0.03) possibly_damaging(0.741) TCGA-G4-6309-01 10 125798145 125798145 G A CHST15 Missense_Mutation p.T359M 0.36 tolerated(0.13) benign(0.025) TCGA-G4-6309-01 10 13337497 13337497 G A PHYH Missense_Mutation p.R82W 0.47 deleterious(0.04) possibly_damaging(0.716) TCGA-G4-6309-01 10 134219226 134219226 G A PWWP2B Missense_Mutation p.V408I 0.36 tolerated(0.53) benign(0.058) TCGA-G4-6309-01 10 134942101 134942101 C T GPR123 Missense_Mutation p.R257C 0.47 deleterious(0.01) probably_damaging(1) TCGA-G4-6309-01 10 135024947 135024947 G A KNDC1 Silent p.S1310S 0.52 TCGA-G4-6309-01 10 135346210 135346210 T C CYP2E1 Silent p.F221F 0.24 TCGA-G4-6309-01 10 15838151 15838152 - G FAM188A Frame_Shift_Ins p.E302* 0.25 TCGA-G4-6309-01 10 17024556 17024556 C T CUBN Missense_Mutation p.R1541Q 0.22 tolerated(1) benign(0.024) TCGA-G4-6309-01 10 18787395 18787395 C T CACNB2 Missense_Mutation p.H149Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-G4-6309-01 10 27406520 27406520 C T YME1L1 Silent p.G625G 0.29 TCGA-G4-6309-01 10 28903549 28903549 G A WAC Silent p.Q497Q 0.56 TCGA-G4-6309-01 10 38408229 38408229 A G ZNF37A 3'UTR 0.13 TCGA-G4-6309-01 10 390986 390986 G A DIP2C Missense_Mutation p.A1099V 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-G4-6309-01 10 50574241 50574241 C T DRGX Missense_Mutation p.A243T 0.32 tolerated_low_confidence(0.3) benign(0.001) TCGA-G4-6309-01 10 54076696 54076696 T G DKK1 3'UTR 0.45 TCGA-G4-6309-01 10 5567267 5567267 G T CALML3 Missense_Mutation p.M73I 0.40 deleterious_low_confidence(0.03) benign(0.377) TCGA-G4-6309-01 10 5790812 5790812 C A FAM208B Missense_Mutation p.L1810I 0.46 tolerated(0.25) benign(0.068) TCGA-G4-6309-01 10 5978484 5978484 G A FBXO18 Silent p.V1016V 0.44 TCGA-G4-6309-01 10 60937318 60937318 T G PHYHIPL Intron 0.12 TCGA-G4-6309-01 10 61832212 61832212 C T ANK3 Silent p.V2809V 0.10 TCGA-G4-6309-01 10 62647977 62647977 C T RHOBTB1 Silent p.T483T 0.30 TCGA-G4-6309-01 10 68687504 68687504 T C LRRTM3 Missense_Mutation p.V277A 0.10 tolerated(0.05) possibly_damaging(0.481) TCGA-G4-6309-01 10 71139760 71139760 G A HK1 Missense_Mutation p.A396T 0.29 tolerated(0.16) possibly_damaging(0.768) TCGA-G4-6309-01 10 7218034 7218039 CTCTAG - SFMBT2 In_Frame_Del p.L633_E634del 0.21 TCGA-G4-6309-01 10 73498332 73498332 C T CDH23 Silent p.P1434P 0.32 TCGA-G4-6309-01 10 75135945 75135945 C T ANXA7 Missense_Mutation p.A459T 0.41 tolerated(0.57) benign(0.01) TCGA-G4-6309-01 10 81930590 81930590 G A ANXA11 Missense_Mutation p.A46V 0.38 deleterious(0.03) unknown(0) TCGA-G4-6309-01 10 859072 859073 - T LARP4B Frame_Shift_Ins p.E671Rfs*105 0.32 TCGA-G4-6309-01 10 88478582 88478582 C T LDB3 Silent p.D657D 0.50 TCGA-G4-6309-01 10 89692826 89692826 T - PTEN Frame_Shift_Del p.C105Vfs*8 0.25 TCGA-G4-6309-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.24 TCGA-G4-6309-01 10 910082 910082 G A LARP4B Silent p.H90H 0.36 TCGA-G4-6309-01 10 91066524 91066524 A - IFIT2 Frame_Shift_Del p.K272Rfs*3 0.19 TCGA-G4-6309-01 10 95069798 95069798 G A MYOF Silent p.A2042A 0.50 TCGA-G4-6309-01 10 98082468 98082468 C T DNTT Nonsense_Mutation p.R245* 0.37 TCGA-G4-6309-01 10 98715666 98715667 - A LCOR Frame_Shift_Ins p.N432Kfs*7 0.30 TCGA-G4-6309-01 11 100730300 100730300 G A ARHGAP42 Missense_Mutation p.D110N 0.36 tolerated(0.06) benign(0.147) TCGA-G4-6309-01 11 1155699 1155699 G A MUC5AC Silent p.A129A 0.37 TCGA-G4-6309-01 11 118344458 118344458 C T KMT2A Nonsense_Mutation p.R862* 0.39 TCGA-G4-6309-01 11 118959352 118959352 G A HMBS Missense_Mutation p.R32H 0.46 deleterious(0.01) benign(0.077) TCGA-G4-6309-01 11 121033000 121033000 C T TECTA Silent p.C1731C 0.41 TCGA-G4-6309-01 11 123489885 123489886 - A GRAMD1B Frame_Shift_Ins p.W696Mfs*13 0.29 TCGA-G4-6309-01 11 123513228 123513228 C T SCN3B Missense_Mutation p.R124Q 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-G4-6309-01 11 124551329 124551329 C T SPA17 Missense_Mutation p.R67C 0.39 deleterious(0) probably_damaging(0.971) TCGA-G4-6309-01 11 124739941 124739941 C T ROBO3 Missense_Mutation p.A248V 0.11 tolerated(0.12) possibly_damaging(0.477) TCGA-G4-6309-01 11 124793715 124793715 C T HEPACAM Missense_Mutation p.V207M 0.21 deleterious(0) probably_damaging(0.94) TCGA-G4-6309-01 11 125447465 125447465 C T EI24 Silent p.I105I 0.08 TCGA-G4-6309-01 11 126162948 126162948 G A TIRAP Missense_Mutation p.R215H 0.18 tolerated(0.08) benign(0.025) TCGA-G4-6309-01 11 1268355 1268355 C - MUC5B Frame_Shift_Del p.P3417Qfs*3 0.32 TCGA-G4-6309-01 11 130079578 130079578 T C ST14 Missense_Mutation p.S810P 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-G4-6309-01 11 18762201 18762201 T G PTPN5 Missense_Mutation p.E288D 0.25 tolerated(0.19) benign(0) TCGA-G4-6309-01 11 19209823 19209823 C T CSRP3 Silent p.T47T 0.55 TCGA-G4-6309-01 11 22363243 22363243 G A SLC17A6 Missense_Mutation p.G86S 0.31 deleterious(0) possibly_damaging(0.603) TCGA-G4-6309-01 11 27149108 27149108 A G BBOX1 3'UTR 0.38 TCGA-G4-6309-01 11 27362973 27362973 T - CCDC34 Frame_Shift_Del p.N244Mfs*28 0.40 TCGA-G4-6309-01 11 27389900 27389900 A G LGR4 Silent p.F790F 0.38 TCGA-G4-6309-01 11 2797241 2797241 G T KCNQ1 Missense_Mutation p.G548C 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 11 34184237 34184237 C A ABTB2 Missense_Mutation p.G702C 0.44 tolerated(0.11) benign(0.321) TCGA-G4-6309-01 11 45924191 45924191 C T MAPK8IP1 Silent p.D291D 0.31 TCGA-G4-6309-01 11 46407750 46407750 C T CHRM4 Missense_Mutation p.V120I 0.41 deleterious(0) probably_damaging(0.954) TCGA-G4-6309-01 11 47178647 47178647 G A C11orf49 Silent p.P175P 0.35 TCGA-G4-6309-01 11 47283270 47283270 C T NR1H3 Missense_Mutation p.A294V 0.34 deleterious(0) benign(0.12) TCGA-G4-6309-01 11 47364637 47364637 G A MYBPC3 Missense_Mutation p.A429V 0.21 deleterious(0.04) benign(0.323) TCGA-G4-6309-01 11 47364669 47364669 C T MYBPC3 Silent p.K418K 0.12 TCGA-G4-6309-01 11 5322681 5322681 A G OR51B4 Missense_Mutation p.C166R 0.31 deleterious(0) possibly_damaging(0.798) TCGA-G4-6309-01 11 55340115 55340115 T C OR4C16 Missense_Mutation p.V171A 0.41 deleterious(0.01) possibly_damaging(0.734) TCGA-G4-6309-01 11 57313991 57313993 CTT - SMTNL1 In_Frame_Del p.F421del 0.39 TCGA-G4-6309-01 11 605710 605710 C T PHRF1 Silent p.S479S 0.23 TCGA-G4-6309-01 11 60707030 60707030 C T SLC15A3 Missense_Mutation p.A453T 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 11 61608163 61608163 A T FADS2 Missense_Mutation p.H195L 0.35 deleterious(0.01) benign(0.403) TCGA-G4-6309-01 11 61725931 61725931 C T BEST1 Intron 0.60 TCGA-G4-6309-01 11 62038382 62038382 A G SCGB2A2 Missense_Mutation p.I29V 0.08 tolerated(0.74) benign(0.051) TCGA-G4-6309-01 11 62415762 62415762 G A INTS5 Missense_Mutation p.A597V 0.43 tolerated(0.6) benign(0.036) TCGA-G4-6309-01 11 64514804 64514804 C T PYGM Missense_Mutation p.R735H 0.38 tolerated(0.11) benign(0.113) TCGA-G4-6309-01 11 64702187 64702187 T C GPHA2 3'UTR 0.44 TCGA-G4-6309-01 11 65658930 65658930 C A CCDC85B 3'UTR 0.24 TCGA-G4-6309-01 11 66031883 66031883 G A KLC2 Missense_Mutation p.R395H 0.28 deleterious(0.01) probably_damaging(0.912) TCGA-G4-6309-01 11 66272154 66272155 - C DPP3 Frame_Shift_Ins p.E653Rfs*14 0.39 TCGA-G4-6309-01 11 66394132 66394132 G A RBM14 Missense_Mutation p.R668H 0.44 deleterious(0.02) unknown(0) TCGA-G4-6309-01 11 67051746 67051748 AGG - ADRBK1 In_Frame_Del p.E520del 0.45 TCGA-G4-6309-01 11 67219720 67219720 G A GPR152 Missense_Mutation p.A159V 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 11 68552320 68552320 C T CPT1A Missense_Mutation p.G376R 0.43 deleterious(0.01) possibly_damaging(0.856) TCGA-G4-6309-01 11 69625389 69625389 C T FGF3 Missense_Mutation p.R135Q 0.38 deleterious(0.03) benign(0.273) TCGA-G4-6309-01 11 7021594 7021594 T G ZNF214 Missense_Mutation p.K440N 0.28 deleterious(0) probably_damaging(0.988) TCGA-G4-6309-01 11 72307655 72307655 G A PDE2A Silent p.A157A 0.34 TCGA-G4-6309-01 11 72424195 72424195 G A ARAP1 Intron 0.37 TCGA-G4-6309-01 11 72437678 72437678 G - ARAP1 Frame_Shift_Del p.R166Afs*4 0.38 TCGA-G4-6309-01 11 75150998 75150998 G A GDPD5 Silent p.D494D 0.45 TCGA-G4-6309-01 11 75727952 75727952 C A UVRAG Missense_Mutation p.P385H 0.43 deleterious(0) probably_damaging(0.997) TCGA-G4-6309-01 11 77885545 77885545 G A KCTD21 Missense_Mutation p.A19V 0.23 tolerated(0.08) benign(0.212) TCGA-G4-6309-01 11 77924839 77924839 T G USP35 Missense_Mutation p.F1013V 0.30 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-G4-6309-01 11 78775999 78775999 C T TENM4 Missense_Mutation p.G93R 0.35 tolerated_low_confidence(0.4) probably_damaging(0.929) TCGA-G4-6309-01 11 788247 788247 C - CEND1 Frame_Shift_Del p.P111Lfs*26 0.24 TCGA-G4-6309-01 11 82876823 82876823 G A PCF11 Missense_Mutation p.R295Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-G4-6309-01 11 82996953 82996953 T C CCDC90B Silent p.S21S 0.53 TCGA-G4-6309-01 11 85396872 85396872 A G CCDC89 Missense_Mutation p.L101P 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6309-01 11 88323884 88323884 C A GRM5 Missense_Mutation p.K525N 0.36 deleterious(0.01) possibly_damaging(0.803) TCGA-G4-6309-01 11 93212377 93212377 G T SMCO4 5'UTR 0.47 TCGA-G4-6309-01 11 94113830 94113830 G T GPR83 Missense_Mutation p.L253I 0.31 deleterious(0.05) benign(0.114) TCGA-G4-6309-01 11 94203690 94203691 - A MRE11A Frame_Shift_Ins p.N322* 0.10 TCGA-G4-6309-01 11 95568500 95568501 - CT MTMR2 Frame_Shift_Ins p.A629Efs*20 0.30 TCGA-G4-6309-01 12 104336334 104336334 G A HSP90B1 Silent p.T468T 0.44 TCGA-G4-6309-01 12 104341580 104341580 A - HSP90B1 3'UTR 0.22 TCGA-G4-6309-01 12 106890601 106890601 G A POLR3B Silent p.A963A 0.37 TCGA-G4-6309-01 12 109623495 109623495 G A ACACB Missense_Mutation p.A644T 0.39 deleterious(0) benign(0.028) TCGA-G4-6309-01 12 111733191 111733192 - A CUX2 Frame_Shift_Ins p.I207Nfs*32 0.37 TCGA-G4-6309-01 12 112601517 112601517 C T HECTD4 Silent p.A4096A 0.40 TCGA-G4-6309-01 12 112654162 112654162 C T HECTD4 Missense_Mutation p.V2321M 0.38 probably_damaging(0.977) TCGA-G4-6309-01 12 113711406 113711406 G A TPCN1 Missense_Mutation p.R364Q 0.45 tolerated(0.25) benign(0.133) TCGA-G4-6309-01 12 114837370 114837370 T C TBX5 Missense_Mutation p.M104V 0.36 tolerated(0.07) possibly_damaging(0.849) TCGA-G4-6309-01 12 118504386 118504386 G A VSIG10 3'UTR 0.39 TCGA-G4-6309-01 12 120288057 120288057 C T CIT Missense_Mutation p.R146Q 0.36 deleterious(0.02) benign(0.079) TCGA-G4-6309-01 12 121666586 121666586 A - P2RX4 Frame_Shift_Del p.T239Qfs*13 0.25 TCGA-G4-6309-01 12 123201425 123201425 T C HCAR3 5'UTR 0.09 TCGA-G4-6309-01 12 124848228 124848228 G - NCOR2 Frame_Shift_Del p.I976Sfs*87 0.40 TCGA-G4-6309-01 12 125900176 125900176 G A TMEM132B Silent p.T348T 0.47 TCGA-G4-6309-01 12 129566494 129566494 C T TMEM132D Missense_Mutation p.R578Q 0.45 deleterious(0) possibly_damaging(0.459) TCGA-G4-6309-01 12 13211470 13211470 C T KIAA1467 Silent p.N173N 0.43 TCGA-G4-6309-01 12 132636093 132636093 C - NOC4L Frame_Shift_Del p.P381Lfs*103 0.28 TCGA-G4-6309-01 12 133151004 133151004 C T FBRSL1 Missense_Mutation p.R562C 0.45 tolerated(0.08) benign(0.193) TCGA-G4-6309-01 12 14940030 14940030 G T WBP11 Missense_Mutation p.A632D 0.44 tolerated(0.33) probably_damaging(0.973) TCGA-G4-6309-01 12 14941923 14941923 C T WBP11 Missense_Mutation p.R485H 0.35 tolerated_low_confidence(0.55) unknown(0) TCGA-G4-6309-01 12 1755091 1755091 C T WNT5B Silent p.S251S 0.61 TCGA-G4-6309-01 12 31604952 31604952 G A DENND5B Silent p.Y517Y 0.14 TCGA-G4-6309-01 12 31944834 31944834 G A H3F3C Silent p.V89V 0.42 TCGA-G4-6309-01 12 33003780 33003780 A G PKP2 Missense_Mutation p.V433A 0.12 deleterious(0) possibly_damaging(0.818) TCGA-G4-6309-01 12 40645148 40645148 C T LRRK2 Missense_Mutation p.T358M 0.33 tolerated(0.09) benign(0.013) TCGA-G4-6309-01 12 46321724 46321725 CT - SCAF11 Frame_Shift_Del p.S587Ffs*7 0.29 TCGA-G4-6309-01 12 46623003 46623003 C T SLC38A1 Missense_Mutation p.A83T 0.44 deleterious(0) possibly_damaging(0.642) TCGA-G4-6309-01 12 49580452 49580452 C T TUBA1A Silent p.T56T 0.38 TCGA-G4-6309-01 12 50100919 50100919 G - FMNL3 Frame_Shift_Del p.S16Lfs*27 0.23 TCGA-G4-6309-01 12 5020710 5020710 G A KCNA1 Missense_Mutation p.A56T 0.31 tolerated(0.51) benign(0.396) TCGA-G4-6309-01 12 53553421 53553421 C T CSAD Missense_Mutation p.E459K 0.26 tolerated(0.45) benign(0.001) TCGA-G4-6309-01 12 53774021 53774021 C - SP1 5'UTR 0.32 TCGA-G4-6309-01 12 53824029 53824029 G A AMHR2 Missense_Mutation p.R463H 0.36 deleterious(0) possibly_damaging(0.832) TCGA-G4-6309-01 12 56217225 56217225 T C DNAJC14 Missense_Mutation p.D492G 0.08 deleterious(0) probably_damaging(0.916) TCGA-G4-6309-01 12 56604296 56604296 C T RNF41 Silent p.Q49Q 0.45 TCGA-G4-6309-01 12 57651791 57651791 G C R3HDM2 Missense_Mutation p.P797A 0.32 deleterious(0.02) benign(0.234) TCGA-G4-6309-01 12 58019203 58019203 G A SLC26A10 Missense_Mutation p.R495Q 0.23 tolerated(0.39) benign(0.022) TCGA-G4-6309-01 12 58025102 58025103 - C B4GALNT1 Frame_Shift_Ins p.L89Pfs*13 0.42 TCGA-G4-6309-01 12 58126676 58126676 C T AGAP2 Missense_Mutation p.E546K 0.14 deleterious(0) probably_damaging(0.995) TCGA-G4-6309-01 12 6134769 6134769 C T VWF Missense_Mutation p.V1067I 0.36 tolerated(0.6) benign(0.009) TCGA-G4-6309-01 12 6443382 6443382 T C TNFRSF1A Missense_Mutation p.Y23C 0.33 deleterious(0.01) possibly_damaging(0.885) TCGA-G4-6309-01 12 64891438 64891439 CT - TBK1 Frame_Shift_Del p.L658Afs*23 0.35 TCGA-G4-6309-01 12 66638990 66638990 T C IRAK3 Missense_Mutation p.L421S 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6309-01 12 6709009 6709009 T C CHD4 Missense_Mutation p.Y471C 0.32 deleterious(0) probably_damaging(0.98) TCGA-G4-6309-01 12 6859097 6859098 - C MLF2 Frame_Shift_Ins p.D159Gfs*28 0.22 TCGA-G4-6309-01 12 7966965 7966965 C T SLC2A14 Missense_Mutation p.V504I 0.34 tolerated(0.67) benign(0.001) TCGA-G4-6309-01 12 81101488 81101490 AGG - MYF6 5'UTR 0.39 TCGA-G4-6309-01 12 88440620 88440620 T C C12orf29 Missense_Mutation p.I219T 0.29 deleterious(0.04) benign(0.008) TCGA-G4-6309-01 12 9142272 9142272 C T KLRG1 Missense_Mutation p.T14M 0.48 tolerated(0.09) benign(0.116) TCGA-G4-6309-01 12 94703842 94703843 - T CCDC41 Frame_Shift_Ins p.R618Kfs*10 0.27 TCGA-G4-6309-01 13 110436009 110436009 C T IRS2 Missense_Mutation p.V798I 0.20 tolerated(0.47) benign(0.002) TCGA-G4-6309-01 13 113718734 113718734 G A MCF2L Silent p.T202T 0.40 TCGA-G4-6309-01 13 114202742 114202742 G A TMCO3 Missense_Mutation p.R632Q 0.44 tolerated(0.08) possibly_damaging(0.903) TCGA-G4-6309-01 13 21742410 21742410 G A SKA3 Missense_Mutation p.R154C 0.26 tolerated(0.06) benign(0.187) TCGA-G4-6309-01 13 31735655 31735655 C - HSPH1 Frame_Shift_Del p.G22Afs*66 0.29 TCGA-G4-6309-01 13 37679644 37679644 G A CSNK1A1L 5'UTR 0.50 TCGA-G4-6309-01 13 38154035 38154035 A - POSTN Frame_Shift_Del p.F541Lfs*4 0.26 TCGA-G4-6309-01 13 46090289 46090289 T C COG3 Silent p.D607D 0.42 TCGA-G4-6309-01 13 46137868 46137868 G A FAM194B Missense_Mutation p.R415C 0.42 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 13 46537998 46537998 T G ZC3H13 Silent p.R1552R 0.41 TCGA-G4-6309-01 13 46559694 46559694 G A ZC3H13 Silent p.S486S 0.41 TCGA-G4-6309-01 13 49852561 49852561 G A CDADC1 Missense_Mutation p.A376T 0.34 deleterious(0) probably_damaging(0.997) TCGA-G4-6309-01 13 52343353 52343353 G T DHRS12 Silent p.T261T 0.17 TCGA-G4-6309-01 13 77785378 77785378 T A MYCBP2 Missense_Mutation p.T1076S 0.29 probably_damaging(0.965) TCGA-G4-6309-01 13 79177484 79177484 C A POU4F1 5'UTR 0.31 TCGA-G4-6309-01 13 79189949 79189950 CT - RNF219 Frame_Shift_Del p.E649Vfs*15 0.42 TCGA-G4-6309-01 13 99093058 99093058 G A FARP1 Missense_Mutation p.V922I 0.44 tolerated(0.13) benign(0.305) TCGA-G4-6309-01 14 100182532 100182532 T C CYP46A1 Silent p.I301I 0.33 TCGA-G4-6309-01 14 102372766 102372766 A G PPP2R5C Missense_Mutation p.N382D 0.20 deleterious(0) possibly_damaging(0.899) TCGA-G4-6309-01 14 102918775 102918775 G A TECPR2 Missense_Mutation p.V1151I 0.56 tolerated(0.38) benign(0.001) TCGA-G4-6309-01 14 103568530 103568530 C T EXOC3L4 Missense_Mutation p.T157M 0.48 tolerated(0.1) benign(0.046) TCGA-G4-6309-01 14 103593012 103593012 A T TNFAIP2 Missense_Mutation p.D73V 0.16 tolerated(0.06) benign(0.054) TCGA-G4-6309-01 14 104174939 104174939 A G XRCC3 Missense_Mutation p.L38P 0.30 deleterious(0) possibly_damaging(0.714) TCGA-G4-6309-01 14 105180625 105180625 C T INF2 Silent p.S1042S 0.44 TCGA-G4-6309-01 14 20296101 20296101 G A OR4N2 Missense_Mutation p.R165H 0.47 tolerated(0.71) benign(0.013) TCGA-G4-6309-01 14 20898070 20898070 G T KLHL33 Silent p.A255A 0.46 TCGA-G4-6309-01 14 21971808 21971808 G A METTL3 Missense_Mutation p.T106M 0.09 tolerated(0.07) benign(0.289) TCGA-G4-6309-01 14 23072897 23072897 C T ABHD4 Missense_Mutation p.R185C 0.18 tolerated(0.11) probably_damaging(0.959) TCGA-G4-6309-01 14 23391748 23391748 G A PRMT5 Missense_Mutation p.R534C 0.20 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 14 23587815 23587815 G - CEBPE Frame_Shift_Del p.G163Afs*22 0.30 TCGA-G4-6309-01 14 23855702 23855702 C T MYH6 Missense_Mutation p.R1594Q 0.40 tolerated(0.07) probably_damaging(0.951) TCGA-G4-6309-01 14 23866227 23866227 G A MYH6 Missense_Mutation p.R705C 0.28 deleterious(0) probably_damaging(0.958) TCGA-G4-6309-01 14 23901906 23901906 G A MYH7 Silent p.S148S 0.36 TCGA-G4-6309-01 14 24878873 24878873 C - NYNRIN Frame_Shift_Del p.Q626Rfs*7 0.21 TCGA-G4-6309-01 14 25101228 25101228 C T GZMB Missense_Mutation p.G146S 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6309-01 14 36840614 36840614 C T DPPA3P2 RNA 0.33 TCGA-G4-6309-01 14 38680980 38680980 C T SSTR1 3'UTR 0.47 TCGA-G4-6309-01 14 45623909 45623909 G A FANCM Missense_Mutation p.R398Q 0.37 deleterious(0.01) possibly_damaging(0.63) TCGA-G4-6309-01 14 45658327 45658327 A G FANCM Missense_Mutation p.Q1701R 0.20 tolerated(0.16) benign(0.295) TCGA-G4-6309-01 14 50218611 50218611 C A KLHDC1 3'UTR 0.35 TCGA-G4-6309-01 14 50626647 50626647 C T SOS2 Missense_Mutation p.G452S 0.32 tolerated(0.16) benign(0.086) TCGA-G4-6309-01 14 58827642 58827642 C T ARID4A Silent p.D654D 0.43 TCGA-G4-6309-01 14 63671716 63671716 C T RHOJ Silent p.N43N 0.36 TCGA-G4-6309-01 14 64494269 64494269 C T SYNE2 Missense_Mutation p.L2158F 0.29 probably_damaging(0.999) TCGA-G4-6309-01 14 65239382 65239382 G A SPTB Silent p.D1823D 0.19 TCGA-G4-6309-01 14 65260131 65260131 G A SPTB Silent p.G750G 0.30 TCGA-G4-6309-01 14 68044016 68044016 C T PLEKHH1 Intron 0.27 TCGA-G4-6309-01 14 69262957 69262957 G - ZFP36L1 5'Flank 0.32 TCGA-G4-6309-01 14 70477639 70477639 G A SMOC1 Missense_Mutation p.R278H 0.39 deleterious(0.03) probably_damaging(0.927) TCGA-G4-6309-01 14 70634579 70634579 G A SLC8A3 Silent p.Y187Y 0.39 TCGA-G4-6309-01 14 71197366 71197366 G A MAP3K9 Missense_Mutation p.R1030C 0.62 tolerated(0.08) probably_damaging(0.949) TCGA-G4-6309-01 14 71517414 71517415 - C PCNX Frame_Shift_Ins p.W1464Mfs*63 0.08 TCGA-G4-6309-01 14 73730412 73730412 G A PAPLN Missense_Mutation p.R901Q 0.41 tolerated(1) benign(0.015) TCGA-G4-6309-01 14 73751032 73751032 C T NUMB Missense_Mutation p.A236T 0.24 tolerated(0.29) benign(0.001) TCGA-G4-6309-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.49 TCGA-G4-6309-01 14 74538148 74538148 C A ALDH6A1 Missense_Mutation p.M160I 0.38 tolerated(0.3) benign(0.111) TCGA-G4-6309-01 14 77229333 77229333 G T VASH1 Missense_Mutation p.G57C 0.15 deleterious(0) probably_damaging(0.991) TCGA-G4-6309-01 14 77492078 77492078 C T IRF2BPL Silent p.P686P 0.50 TCGA-G4-6309-01 14 88946169 88946169 C T PTPN21 Missense_Mutation p.A536T 0.27 tolerated(0.8) probably_damaging(0.999) TCGA-G4-6309-01 14 95579495 95579495 C T DICER1 Silent p.L658L 0.40 TCGA-G4-6309-01 15 100739609 100739609 A G ADAMTS17 Silent p.G365G 0.48 TCGA-G4-6309-01 15 23330255 23330255 C T HERC2P2 RNA 0.36 TCGA-G4-6309-01 15 28391393 28391393 G A HERC2 Silent p.S3666S 0.38 TCGA-G4-6309-01 15 29385276 29385276 A G APBA2 Splice_Site p.X357_splice 0.22 TCGA-G4-6309-01 15 29393908 29393908 A G APBA2 Missense_Mutation p.D482G 0.10 deleterious(0.04) probably_damaging(0.95) TCGA-G4-6309-01 15 31776490 31776490 C T OTUD7A Silent p.A596A 0.75 TCGA-G4-6309-01 15 34444996 34444996 A - KATNBL1 Frame_Shift_Del p.S145Lfs*19 0.30 TCGA-G4-6309-01 15 39885831 39885831 C T THBS1 Missense_Mutation p.R1077W 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 15 40587217 40587217 C T PLCB2 Missense_Mutation p.R609H 0.37 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 15 40913706 40913706 C T CASC5 Missense_Mutation p.S441F 0.17 deleterious(0.05) probably_damaging(0.987) TCGA-G4-6309-01 15 41384304 41384304 C A INO80 Missense_Mutation p.S153I 0.38 deleterious(0.01) benign(0.382) TCGA-G4-6309-01 15 42185396 42185396 C - SPTBN5 Intron 0.28 TCGA-G4-6309-01 15 42375404 42375404 G A PLA2G4D Missense_Mutation p.R222C 0.28 tolerated(0.35) benign(0) TCGA-G4-6309-01 15 42434235 42434235 C T PLA2G4F Missense_Mutation p.A833T 0.41 tolerated(0.16) possibly_damaging(0.762) TCGA-G4-6309-01 15 42727684 42727684 A G ZNF106 Silent p.H1570H 0.15 TCGA-G4-6309-01 15 43026468 43026468 G T CDAN1 Missense_Mutation p.L405M 0.28 deleterious(0) probably_damaging(0.994) TCGA-G4-6309-01 15 44962250 44962250 G A PATL2 Silent p.D231D 0.27 TCGA-G4-6309-01 15 48773896 48773896 C T FBN1 Missense_Mutation p.C1307Y 0.37 probably_damaging(0.989) TCGA-G4-6309-01 15 53049845 53049845 G A ONECUT1 Silent p.N435N 0.07 TCGA-G4-6309-01 15 54305890 54305890 C T UNC13C Nonsense_Mutation p.R264* 0.54 TCGA-G4-6309-01 15 54626040 54626040 T - UNC13C Frame_Shift_Del p.F1525Lfs*3 0.32 TCGA-G4-6309-01 15 55611484 55611484 G - PIGB Frame_Shift_Del p.G14Afs*19 0.19 TCGA-G4-6309-01 15 62361353 62361353 G A C2CD4A 3'UTR 0.20 TCGA-G4-6309-01 15 64686193 64686193 T C TRIP4 Silent p.T50T 0.37 TCGA-G4-6309-01 15 66727451 66727451 A C MAP2K1 Missense_Mutation p.Q56P 0.23 deleterious(0.03) possibly_damaging(0.52) TCGA-G4-6309-01 15 69548369 69548369 A G GLCE Missense_Mutation p.E75G 0.24 deleterious_low_confidence(0.04) benign(0.084) TCGA-G4-6309-01 15 70969449 70969449 C T UACA Missense_Mutation p.E344K 0.42 deleterious(0) probably_damaging(0.995) TCGA-G4-6309-01 15 70994417 70994417 G A UACA Intron 0.64 TCGA-G4-6309-01 15 72855816 72855816 C T ARIH1 Missense_Mutation p.R296C 0.36 tolerated(0.05) possibly_damaging(0.892) TCGA-G4-6309-01 15 73843481 73843481 G A C15orf60 Missense_Mutation p.R179Q 0.42 tolerated(0.59) benign(0.005) TCGA-G4-6309-01 15 74468632 74468632 C T ISLR 3'UTR 0.24 TCGA-G4-6309-01 15 75094786 75094786 A G CSK Missense_Mutation p.M429V 0.16 tolerated(0.16) benign(0) TCGA-G4-6309-01 15 75094810 75094810 C T CSK Nonsense_Mutation p.R437* 0.13 TCGA-G4-6309-01 15 75648770 75648770 C T MAN2C1 Missense_Mutation p.V937I 0.50 deleterious(0.01) possibly_damaging(0.671) TCGA-G4-6309-01 15 75664528 75664528 C T SIN3A Missense_Mutation p.R1205H 0.42 deleterious(0.05) possibly_damaging(0.792) TCGA-G4-6309-01 15 76075500 76075500 G A RN7SL319P 5'Flank 0.30 TCGA-G4-6309-01 15 77287788 77287788 C T PSTPIP1 5'UTR 0.33 TCGA-G4-6309-01 15 77348423 77348423 G A TSPAN3 Missense_Mutation p.R80C 0.44 tolerated(0.16) benign(0.077) TCGA-G4-6309-01 15 85196000 85196000 T - WDR73 Frame_Shift_Del p.K48Rfs*7 0.10 TCGA-G4-6309-01 15 85198601 85198601 G T NMB Missense_Mutation p.P122Q 0.17 tolerated_low_confidence(0.25) benign(0.032) TCGA-G4-6309-01 15 86801231 86801231 A G AGBL1 Missense_Mutation p.K267R 0.42 tolerated(0.17) benign(0.01) TCGA-G4-6309-01 15 90451570 90451570 G A C15orf38-AP3S2 Silent p.I81I 0.45 TCGA-G4-6309-01 15 90802299 90802300 - A TTLL13 3'UTR 0.53 TCGA-G4-6309-01 16 10783182 10783182 T C TEKT5 Splice_Site p.X217_splice 0.10 TCGA-G4-6309-01 16 11016291 11016291 C T CIITA Silent p.A1087A 0.38 TCGA-G4-6309-01 16 11141159 11141159 T - CLEC16A Frame_Shift_Del p.L611Wfs*11 0.27 TCGA-G4-6309-01 16 1268005 1268005 G A CACNA1H Missense_Mutation p.V1804M 0.45 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 16 14687159 14687159 G A PARN Missense_Mutation p.A306V 0.33 tolerated(0.17) benign(0) TCGA-G4-6309-01 16 15027090 15027090 G A NPIPA1 5'Flank 0.27 TCGA-G4-6309-01 16 15719472 15719472 G A KIAA0430 Silent p.N570N 0.27 TCGA-G4-6309-01 16 15771806 15771806 G A NDE1 Missense_Mutation p.R129H 0.41 deleterious(0) benign(0.298) TCGA-G4-6309-01 16 17221577 17221577 T - XYLT1 Frame_Shift_Del p.V724Sfs*55 0.26 TCGA-G4-6309-01 16 1841502 1841502 C T IGFALS Missense_Mutation p.R344Q 0.38 deleterious(0.03) probably_damaging(0.96) TCGA-G4-6309-01 16 20752992 20752992 G A THUMPD1 Silent p.L24L 0.59 TCGA-G4-6309-01 16 2143884 2143884 G A PKD1 Silent p.G3583G 0.44 TCGA-G4-6309-01 16 2161678 2161678 C T PKD1 Missense_Mutation p.G1164R 0.49 probably_damaging(1) TCGA-G4-6309-01 16 22285032 22285032 C T EEF2K Missense_Mutation p.A617V 0.22 deleterious(0) probably_damaging(0.998) TCGA-G4-6309-01 16 2334979 2334979 G A ABCA3 Silent p.D1168D 0.43 TCGA-G4-6309-01 16 23692317 23692317 C T PLK1 Silent p.P220P 0.43 TCGA-G4-6309-01 16 24888628 24888628 A C SLC5A11 Missense_Mutation p.D176A 0.25 deleterious(0.01) possibly_damaging(0.861) TCGA-G4-6309-01 16 2581071 2581071 C T CEMP1 Missense_Mutation p.G2S 0.21 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-G4-6309-01 16 27475894 27475894 G A GTF3C1 Silent p.T1873T 0.35 TCGA-G4-6309-01 16 27642469 27642469 C T KIAA0556 Nonsense_Mutation p.R132* 0.27 TCGA-G4-6309-01 16 28619859 28619859 G A SULT1A1 Nonsense_Mutation p.R72* 0.28 TCGA-G4-6309-01 16 28950042 28950042 C T CD19 Missense_Mutation p.P512L 0.33 deleterious(0) probably_damaging(0.991) TCGA-G4-6309-01 16 29756110 29756110 G A C16orf54 Missense_Mutation p.R55C 0.42 tolerated_low_confidence(0.07) probably_damaging(0.942) TCGA-G4-6309-01 16 29992891 29992892 - G TAOK2 Intron 0.28 TCGA-G4-6309-01 16 30958096 30958096 G A FBXL19 Missense_Mutation p.R578H 0.45 deleterious(0.01) possibly_damaging(0.894) TCGA-G4-6309-01 16 31143560 31143560 G A PRSS8 Missense_Mutation p.P268S 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 16 31336072 31336072 C T ITGAM Missense_Mutation p.A754V 0.09 deleterious(0) probably_damaging(0.96) TCGA-G4-6309-01 16 31393262 31393262 G A ITGAX 3'UTR 0.32 TCGA-G4-6309-01 16 3139972 3139972 C A ZSCAN10 Missense_Mutation p.R433L 0.45 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 16 31500573 31500573 C A SLC5A2 Missense_Mutation p.L527I 0.12 deleterious(0) probably_damaging(0.984) TCGA-G4-6309-01 16 3447496 3447496 C T ZSCAN32 5'UTR 0.40 TCGA-G4-6309-01 16 3594302 3594302 G A NLRC3 Silent p.D979D 0.52 TCGA-G4-6309-01 16 46694635 46694636 - T VPS35 Intron 0.22 TCGA-G4-6309-01 16 4700414 4700414 C - MGRN1 Frame_Shift_Del p.H48Tfs*13 0.10 TCGA-G4-6309-01 16 48125093 48125094 - CA ABCC12 Frame_Shift_Ins p.R1075Cfs*54 0.39 TCGA-G4-6309-01 16 49671888 49671888 C T ZNF423 Missense_Mutation p.R392Q 0.54 tolerated(0.33) benign(0.006) TCGA-G4-6309-01 16 50745399 50745399 C - NOD2 Frame_Shift_Del p.P528Qfs*235 0.30 TCGA-G4-6309-01 16 55690799 55690799 T C SLC6A2 Missense_Mutation p.F65L 0.12 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 16 57282482 57282482 T C ARL2BP Missense_Mutation p.M45T 0.42 deleterious(0.04) probably_damaging(0.984) TCGA-G4-6309-01 16 57552050 57552050 C T CCDC102A Missense_Mutation p.R393Q 0.50 tolerated(0.19) benign(0.197) TCGA-G4-6309-01 16 57789315 57789315 G A KATNB1 Missense_Mutation p.R492H 0.27 tolerated(0.12) possibly_damaging(0.832) TCGA-G4-6309-01 16 57805300 57805300 G A KIFC3 Missense_Mutation p.A192V 0.43 tolerated(0.18) benign(0.003) TCGA-G4-6309-01 16 57805546 57805546 C T KIFC3 Missense_Mutation p.R145Q 0.43 tolerated(0.14) benign(0.017) TCGA-G4-6309-01 16 58075574 58075574 C T MMP15 Missense_Mutation p.R322W 0.56 deleterious(0) probably_damaging(0.929) TCGA-G4-6309-01 16 67181012 67181012 T C C16orf70 Missense_Mutation p.L416P 0.27 deleterious_low_confidence(0.03) benign(0.091) TCGA-G4-6309-01 16 67645309 67645310 - A CTCF Frame_Shift_Ins p.D194Rfs*36 0.25 TCGA-G4-6309-01 16 67762310 67762310 G A RANBP10 Missense_Mutation p.T486M 0.20 tolerated(0.11) benign(0.053) TCGA-G4-6309-01 16 682838 682838 C T WFIKKN1 Missense_Mutation p.A143V 0.46 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 16 68289854 68289855 - G PLA2G15 Frame_Shift_Ins p.V233Rfs*47 0.42 TCGA-G4-6309-01 16 70163012 70163012 T C PDPR Silent p.A198A 0.20 TCGA-G4-6309-01 16 72090515 72090515 C T HP Missense_Mutation p.R59C 0.14 deleterious(0.04) benign(0.248) TCGA-G4-6309-01 16 72845582 72845582 C T ZFHX3 Missense_Mutation p.R1253H 0.25 possibly_damaging(0.813) TCGA-G4-6309-01 16 74706178 74706178 A G MLKL 3'UTR 0.40 TCGA-G4-6309-01 16 77334217 77334217 T - ADAMTS18 Frame_Shift_Del p.R873Dfs*22 0.37 TCGA-G4-6309-01 16 774419 774419 G A CCDC78 Missense_Mutation p.R286C 0.24 deleterious(0) probably_damaging(0.95) TCGA-G4-6309-01 16 81319149 81319149 A G BCMO1 Silent p.L404L 0.09 TCGA-G4-6309-01 16 82197726 82197726 T A MPHOSPH6 Missense_Mutation p.E42V 0.33 deleterious(0) probably_damaging(0.998) TCGA-G4-6309-01 16 841902 841902 G A CHTF18 Missense_Mutation p.V386M 0.46 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 16 84218573 84218573 G A TAF1C Missense_Mutation p.R8C 0.45 tolerated(0.14) benign(0.072) TCGA-G4-6309-01 16 84494274 84494274 C A ATP2C2 Missense_Mutation p.P783H 0.27 deleterious(0) possibly_damaging(0.861) TCGA-G4-6309-01 16 85132762 85132762 C T FAM92B 3'UTR 0.35 TCGA-G4-6309-01 16 85691047 85691049 GAG - GSE1 In_Frame_Del p.E495del 0.52 TCGA-G4-6309-01 16 85839494 85839494 T C COX4I1 Intron 0.33 TCGA-G4-6309-01 16 88781995 88781995 G A PIEZO1 3'UTR 0.44 TCGA-G4-6309-01 16 89347751 89347751 C T ANKRD11 Silent p.A1733A 0.36 TCGA-G4-6309-01 16 89347805 89347805 G A ANKRD11 Silent p.Y1715Y 0.46 TCGA-G4-6309-01 16 89775697 89775697 G A VPS9D1 Missense_Mutation p.A512V 0.39 deleterious(0) probably_damaging(0.993) TCGA-G4-6309-01 17 11684467 11684467 G A DNAH9 Missense_Mutation p.R2565Q 0.42 probably_damaging(0.917) TCGA-G4-6309-01 17 14139283 14139283 C T CDRT15 Missense_Mutation p.A153T 0.29 tolerated_low_confidence(0.22) benign(0.025) TCGA-G4-6309-01 17 15641640 15641640 G A TBC1D26 Missense_Mutation p.R109Q 0.42 tolerated(1) benign(0.003) TCGA-G4-6309-01 17 16365637 16365637 G T FAM211A Missense_Mutation p.L104M 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6309-01 17 1787164 1787164 G A RPA1 Missense_Mutation p.G434R 0.36 tolerated(0.11) possibly_damaging(0.617) TCGA-G4-6309-01 17 18882873 18882873 G A FAM83G Silent p.C268C 0.11 TCGA-G4-6309-01 17 19685218 19685218 G A ULK2 Silent p.L875L 0.28 TCGA-G4-6309-01 17 19809487 19809487 A - AKAP10 3'UTR 0.40 TCGA-G4-6309-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.27 TCGA-G4-6309-01 17 26942127 26942127 G A KIAA0100 Silent p.G2221G 0.34 TCGA-G4-6309-01 17 27031113 27031113 G - PROCA1 Frame_Shift_Del p.I159Sfs*14 0.28 TCGA-G4-6309-01 17 27061981 27061981 G A NEK8 Missense_Mutation p.G149S 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6309-01 17 27085636 27085636 A G FAM222B Silent p.G447G 0.29 TCGA-G4-6309-01 17 28505126 28505126 C A NSRP1 Missense_Mutation p.A70D 0.42 deleterious(0.01) benign(0.201) TCGA-G4-6309-01 17 29219768 29219769 - T ATAD5 Frame_Shift_Ins p.S1470Ffs*4 0.28 TCGA-G4-6309-01 17 293107 293107 T C FAM101B Missense_Mutation p.S95G 0.31 deleterious(0) probably_damaging(0.986) TCGA-G4-6309-01 17 3343555 3343555 G A SPATA22 Silent p.F326F 0.38 TCGA-G4-6309-01 17 33520897 33520897 C T SLC35G3 Missense_Mutation p.V144I 0.55 tolerated(0.88) benign(0.003) TCGA-G4-6309-01 17 34173986 34173986 C - TAF15 3'UTR 0.25 TCGA-G4-6309-01 17 35454888 35454889 - T ACACA Frame_Shift_Ins p.E2200Gfs*26 0.26 TCGA-G4-6309-01 17 3582949 3582949 C T P2RX5 Silent p.A398A 0.69 TCGA-G4-6309-01 17 36991355 36991355 T - C17orf98 3'UTR 0.39 TCGA-G4-6309-01 17 37566444 37566444 C T MED1 Missense_Mutation p.R677H 0.31 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-G4-6309-01 17 37646922 37646922 C - CDK12 Frame_Shift_Del p.P683Qfs*70 0.26 TCGA-G4-6309-01 17 38171995 38171995 C - CSF3 Frame_Shift_Del p.L33Wfs*16 0.30 TCGA-G4-6309-01 17 3850865 3850865 C T ATP2A3 Silent p.A305A 0.17 TCGA-G4-6309-01 17 39776787 39776787 C T KRT17 Splice_Site p.X402_splice 0.54 TCGA-G4-6309-01 17 40724876 40724876 T C PSMC3IP 3'UTR 0.38 TCGA-G4-6309-01 17 41720884 41720884 G A MEOX1 Missense_Mutation p.A205V 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 17 42156194 42156194 C T HDAC5 Silent p.V1045V 0.41 TCGA-G4-6309-01 17 42239308 42239308 C A C17orf53 3'UTR 0.33 TCGA-G4-6309-01 17 43175869 43175869 A G NMT1 Missense_Mutation p.Q278R 0.19 deleterious(0) probably_damaging(0.998) TCGA-G4-6309-01 17 43368026 43368026 G A MAP3K14 RNA 0.42 TCGA-G4-6309-01 17 44172046 44172046 T - KANSL1 Frame_Shift_Del p.K437Nfs*43 0.27 TCGA-G4-6309-01 17 4579376 4579376 C T PELP1 Missense_Mutation p.R312Q 0.19 benign(0.061) TCGA-G4-6309-01 17 46148675 46148676 TA - CBX1 3'UTR 0.33 TCGA-G4-6309-01 17 4644022 4644022 A G ZMYND15 Missense_Mutation p.H60R 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6309-01 17 46621915 46621915 G A HOXB2 Missense_Mutation p.A120V 0.30 tolerated(0.37) benign(0.001) TCGA-G4-6309-01 17 4713293 4713293 C T PLD2 Missense_Mutation p.R277W 0.09 deleterious(0) possibly_damaging(0.556) TCGA-G4-6309-01 17 4797851 4797851 G T MINK1 Missense_Mutation p.G947V 0.33 tolerated(0.1) probably_damaging(0.946) TCGA-G4-6309-01 17 48191638 48191638 G - SAMD14 Frame_Shift_Del p.S314Afs*67 0.32 TCGA-G4-6309-01 17 53851225 53851225 G A PCTP Silent p.A160A 0.47 TCGA-G4-6309-01 17 56283704 56283704 G A MKS1 Missense_Mutation p.R510W 0.20 deleterious(0.02) benign(0.004) TCGA-G4-6309-01 17 56499786 56499786 G T HSF5 Missense_Mutation p.H576N 0.37 deleterious_low_confidence(0.01) benign(0.075) TCGA-G4-6309-01 17 59962267 59962267 A G INTS2 Missense_Mutation p.L703S 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-G4-6309-01 17 64785001 64785001 G - PRKCA Frame_Shift_Del p.E588Rfs*4 0.30 TCGA-G4-6309-01 17 65052343 65052343 C T CACNG1 Missense_Mutation p.R209W 0.39 tolerated(0.19) benign(0.425) TCGA-G4-6309-01 17 65336910 65336910 T - PSMD12 3'UTR 0.30 TCGA-G4-6309-01 17 7127173 7127173 G - ACADVL Frame_Shift_Del p.G462Vfs*5 0.29 TCGA-G4-6309-01 17 71357915 71357915 G A SDK2 Missense_Mutation p.A1792V 0.19 tolerated(0.14) probably_damaging(0.928) TCGA-G4-6309-01 17 7139478 7139478 C T PHF23 Silent p.E256E 0.32 TCGA-G4-6309-01 17 7359178 7359178 C T CHRNB1 Missense_Mutation p.A428V 0.51 tolerated(0.29) benign(0.002) TCGA-G4-6309-01 17 73725372 73725373 - C ITGB4 Frame_Shift_Ins p.F201Lfs*15 0.32 TCGA-G4-6309-01 17 73746235 73746235 G A ITGB4 Silent p.Q1120Q 0.38 TCGA-G4-6309-01 17 73898139 73898139 G A MRPL38 Missense_Mutation p.A115V 0.08 tolerated(0.15) benign(0.051) TCGA-G4-6309-01 17 74469369 74469369 C A RHBDF2 Missense_Mutation p.G621C 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 17 76672022 76672022 A - CYTH1 3'UTR 0.37 TCGA-G4-6309-01 17 76989890 76989890 G A CANT1 Silent p.G316G 0.73 TCGA-G4-6309-01 17 79094325 79094325 G A AATK Silent p.G1137G 0.38 TCGA-G4-6309-01 17 79234089 79234089 G A SLC38A10 Missense_Mutation p.R413W 0.52 deleterious(0.01) possibly_damaging(0.677) TCGA-G4-6309-01 17 79428889 79428889 C T RP11-1055B8.7 Silent p.T2400T 0.39 TCGA-G4-6309-01 17 7976084 7976084 C T ALOX12B 3'UTR 0.34 TCGA-G4-6309-01 17 80071338 80071338 C A CCDC57 Missense_Mutation p.R314M 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-G4-6309-01 17 80439039 80439039 C - NARF Frame_Shift_Del p.P242Lfs*13 0.32 TCGA-G4-6309-01 18 32395924 32395924 C A DTNA Missense_Mutation p.P219T 0.49 deleterious(0.02) possibly_damaging(0.868) TCGA-G4-6309-01 18 33739713 33739713 A G ELP2 Missense_Mutation p.Q582R 0.11 tolerated(0.1) benign(0.009) TCGA-G4-6309-01 18 33780032 33780032 C T MOCOS Missense_Mutation p.T229M 0.07 tolerated(0.11) benign(0.109) TCGA-G4-6309-01 18 3814116 3814116 C T DLGAP1 Missense_Mutation p.R372Q 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-G4-6309-01 18 43316473 43316473 G A SLC14A1 Missense_Mutation p.V231I 0.21 tolerated(0.08) benign(0.111) TCGA-G4-6309-01 18 44143046 44143046 C T LOXHD1 5'Flank 0.38 TCGA-G4-6309-01 18 44560669 44560669 G A TCEB3B Missense_Mutation p.R323W 0.45 tolerated(0.19) benign(0.042) TCGA-G4-6309-01 18 45567085 45567085 C - ZBTB7C Frame_Shift_Del p.D132Tfs*90 0.32 TCGA-G4-6309-01 18 48256033 48256033 C T MAPK4 Missense_Mutation p.R525C 0.31 tolerated_low_confidence(0.09) benign(0) TCGA-G4-6309-01 18 48584514 48584514 G - SMAD4 Frame_Shift_Del p.G231Afs*10 0.48 TCGA-G4-6309-01 18 52556572 52556572 T C RAB27B Silent p.P195P 0.15 TCGA-G4-6309-01 18 5438079 5438079 T G EPB41L3 Missense_Mutation p.K187T 0.48 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 18 55282952 55282952 C A NARS Missense_Mutation p.S88I 0.09 tolerated(0.11) benign(0) TCGA-G4-6309-01 18 56246440 56246440 T - ALPK2 Frame_Shift_Del p.K523Rfs*15 0.24 TCGA-G4-6309-01 18 580555 580555 C T CETN1 Silent p.D49D 0.40 TCGA-G4-6309-01 18 60243776 60243776 C - ZCCHC2 Frame_Shift_Del p.P1169Lfs*70 0.26 TCGA-G4-6309-01 18 641354 641354 C G CLUL1 Missense_Mutation p.T341R 0.38 tolerated(0.15) benign(0.015) TCGA-G4-6309-01 18 67997261 67997261 A G SOCS6 3'UTR 0.43 TCGA-G4-6309-01 18 72632664 72632665 TG - ZNF407 Intron 0.23 TCGA-G4-6309-01 18 76974028 76974029 - A ATP9B Frame_Shift_Ins p.N368Kfs*2 0.27 TCGA-G4-6309-01 18 77806212 77806212 G T RBFA 3'UTR 0.57 TCGA-G4-6309-01 18 77918321 77918321 G A PARD6G Missense_Mutation p.T155M 0.42 deleterious(0) probably_damaging(0.942) TCGA-G4-6309-01 19 10335484 10335484 C T S1PR2 Missense_Mutation p.R33H 0.67 tolerated(0.12) possibly_damaging(0.731) TCGA-G4-6309-01 19 10398481 10398481 C T ICAM4 Missense_Mutation p.P196L 0.92 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-G4-6309-01 19 10935765 10935767 CTT - DNM2 In_Frame_Del p.F643del 0.90 TCGA-G4-6309-01 19 1108295 1108295 G A SBNO2 Missense_Mutation p.A1342V 1.00 tolerated_low_confidence(0.08) benign(0.001) TCGA-G4-6309-01 19 1112035 1112035 G A SBNO2 Missense_Mutation p.T887M 0.65 deleterious(0) probably_damaging(0.913) TCGA-G4-6309-01 19 11352472 11352472 G A C19orf80 3'UTR 0.69 TCGA-G4-6309-01 19 11557905 11557906 AC - PRKCSH Frame_Shift_Del p.Q262Dfs*34 0.47 TCGA-G4-6309-01 19 11943036 11943036 T C ZNF440 Missense_Mutation p.F349L 0.71 deleterious(0.05) possibly_damaging(0.645) TCGA-G4-6309-01 19 1255006 1255006 G A MIDN Missense_Mutation p.V268I 0.67 tolerated(0.43) benign(0.103) TCGA-G4-6309-01 19 12786945 12786945 G A DHPS Silent p.A300A 0.44 TCGA-G4-6309-01 19 12826087 12826087 C T TNPO2 Silent p.A206A 0.78 TCGA-G4-6309-01 19 12874152 12874152 G A HOOK2 Missense_Mutation p.R702C 0.55 deleterious(0) probably_damaging(0.996) TCGA-G4-6309-01 19 12937619 12937619 G T RTBDN Silent p.G176G 0.09 TCGA-G4-6309-01 19 14001124 14001124 G A C19orf57 Missense_Mutation p.A182V 0.92 deleterious(0.02) possibly_damaging(0.873) TCGA-G4-6309-01 19 1440147 1440147 G A RPS15 Silent p.P73P 0.14 TCGA-G4-6309-01 19 16614049 16614049 G A C19orf44 Silent p.T311T 0.57 TCGA-G4-6309-01 19 17691707 17691707 C T COLGALT1 Missense_Mutation p.H532Y 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6309-01 19 17837538 17837538 C T MAP1S Nonsense_Mutation p.Q449* 0.53 TCGA-G4-6309-01 19 18961630 18961630 C T UPF1 Missense_Mutation p.R255C 0.48 deleterious(0.01) benign(0.075) TCGA-G4-6309-01 19 19764654 19764654 C T ATP13A1 Missense_Mutation p.R680Q 0.28 tolerated(0.07) possibly_damaging(0.529) TCGA-G4-6309-01 19 2399130 2399130 G A TMPRSS9 Silent p.R117R 0.58 TCGA-G4-6309-01 19 33078301 33078302 - A PDCD5 3'UTR 0.33 TCGA-G4-6309-01 19 35842730 35842730 C A FFAR1 Silent p.A92A 0.48 TCGA-G4-6309-01 19 37006567 37006567 C T ZNF260 5'UTR 0.46 TCGA-G4-6309-01 19 3740660 3740660 G A TJP3 Missense_Mutation p.R590H 0.80 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 19 37974994 37974994 T - ZNF570 Frame_Shift_Del p.F158Lfs*25 0.36 TCGA-G4-6309-01 19 38610084 38610084 C T SIPA1L3 Silent p.S810S 0.50 TCGA-G4-6309-01 19 38876197 38876197 C - GGN Frame_Shift_Del p.A569Pfs*47 0.30 TCGA-G4-6309-01 19 39017657 39017657 G A RYR1 Missense_Mutation p.E3551K 0.40 benign(0.001) TCGA-G4-6309-01 19 39233121 39233121 G - CAPN12 Frame_Shift_Del p.R119Gfs*47 0.30 TCGA-G4-6309-01 19 39297124 39297124 C T LGALS4 Missense_Mutation p.G151R 0.28 deleterious(0) probably_damaging(0.993) TCGA-G4-6309-01 19 41770479 41770479 G A HNRNPUL1 Missense_Mutation p.G24D 0.69 deleterious(0) unknown(0) TCGA-G4-6309-01 19 41938238 41938240 CTC - ATP5SL In_Frame_Del p.E230del 0.41 TCGA-G4-6309-01 19 42126013 42126013 G A CEACAM4 Intron 0.35 TCGA-G4-6309-01 19 42410946 42410946 G A ARHGEF1 3'UTR 0.30 TCGA-G4-6309-01 19 44222904 44222904 C T IRGC Missense_Mutation p.A65V 0.28 deleterious(0) probably_damaging(0.983) TCGA-G4-6309-01 19 44223170 44223170 G A IRGC Missense_Mutation p.A154T 0.29 tolerated(0.38) benign(0.002) TCGA-G4-6309-01 19 44466915 44466916 CT - ZNF221 Frame_Shift_Del p.C14Qfs*4 0.29 TCGA-G4-6309-01 19 45860908 45860908 G C ERCC2 Silent p.A429A 0.56 TCGA-G4-6309-01 19 47207523 47207523 C T PRKD2 Silent p.P264P 0.37 TCGA-G4-6309-01 19 48047828 48047828 A G ZNF541 Missense_Mutation p.V653A 0.25 tolerated(0.38) benign(0.002) TCGA-G4-6309-01 19 48244552 48244552 G A EHD2 Missense_Mutation p.G499S 0.16 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 19 48836386 48836386 A - TMEM143 3'UTR 0.37 TCGA-G4-6309-01 19 49472676 49472676 G A GYS1 Missense_Mutation p.R695C 0.26 deleterious_low_confidence(0.01) benign(0.265) TCGA-G4-6309-01 19 50045948 50045948 C A RCN3 Missense_Mutation p.P273H 0.42 tolerated(0.13) benign(0.01) TCGA-G4-6309-01 19 50303343 50303343 G A AP2A1 Missense_Mutation p.R464H 0.35 deleterious(0.01) probably_damaging(1) TCGA-G4-6309-01 19 50918719 50918719 C T POLD1 Silent p.H863H 0.35 TCGA-G4-6309-01 19 52250046 52250046 C T FPR1 Missense_Mutation p.A68T 0.37 deleterious(0) probably_damaging(0.996) TCGA-G4-6309-01 19 52520551 52520551 G A ZNF614 Silent p.S100S 0.40 TCGA-G4-6309-01 19 53303572 53303572 C T ZNF28 Missense_Mutation p.C509Y 0.09 tolerated(1) benign(0.384) TCGA-G4-6309-01 19 54573339 54573339 A G TARM1 Missense_Mutation p.V245A 0.45 deleterious(0.04) benign(0.086) TCGA-G4-6309-01 19 55593911 55593911 C T EPS8L1 Silent p.N385N 0.56 TCGA-G4-6309-01 19 55693110 55693110 C - PTPRH 3'UTR 0.26 TCGA-G4-6309-01 19 55865231 55865231 C A COX6B2 Intron 0.21 TCGA-G4-6309-01 19 56204364 56204364 C A EPN1 Silent p.R495R 0.20 TCGA-G4-6309-01 19 56423590 56423590 G A NLRP13 Silent p.C531C 0.44 TCGA-G4-6309-01 19 57286130 57286130 C T ZIM2 Missense_Mutation p.G504S 0.46 tolerated(1) benign(0.1) TCGA-G4-6309-01 19 58049994 58049994 A - ZNF549 Frame_Shift_Del p.R543Dfs*94 0.11 TCGA-G4-6309-01 19 58565423 58565423 G A ZSCAN1 3'UTR 0.44 TCGA-G4-6309-01 19 58579680 58579680 G A ZNF135 Missense_Mutation p.D634N 0.41 deleterious(0.02) benign(0.173) TCGA-G4-6309-01 19 58755381 58755381 A C ZNF544 5'UTR 0.28 TCGA-G4-6309-01 19 58928851 58928851 A G ZNF584 Silent p.G322G 0.09 TCGA-G4-6309-01 19 59081727 59081728 CT - MZF1 Frame_Shift_Del p.E188Gfs*26 0.30 TCGA-G4-6309-01 19 6380978 6380978 G A GTF2F1 Missense_Mutation p.P390S 0.65 deleterious(0.03) probably_damaging(0.999) TCGA-G4-6309-01 19 727015 727015 G A PALM Missense_Mutation p.R22Q 0.78 deleterious(0.01) possibly_damaging(0.83) TCGA-G4-6309-01 19 757983 757983 G A MISP Missense_Mutation p.R346H 0.73 deleterious(0.02) benign(0.271) TCGA-G4-6309-01 19 7623819 7623819 G A PNPLA6 Missense_Mutation p.G1171R 0.69 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 19 7975916 7975916 G A MAP2K7 Missense_Mutation p.D243N 0.81 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 19 8368855 8368855 C T CD320 Missense_Mutation p.R129H 0.88 tolerated(0.28) benign(0.014) TCGA-G4-6309-01 19 8555030 8555030 G T PRAM1 3'UTR 0.18 TCGA-G4-6309-01 19 8563602 8563602 C T PRAM1 Missense_Mutation p.A364T 0.84 tolerated(0.06) benign(0.091) TCGA-G4-6309-01 19 8842033 8842033 G A OR2Z1 Missense_Mutation p.A215T 0.60 tolerated(0.23) benign(0.01) TCGA-G4-6309-01 19 9087488 9087488 G T MUC16 Missense_Mutation p.L1443M 0.24 unknown(0) TCGA-G4-6309-01 1 100159715 100159715 A - PALMD 3'UTR 0.11 TCGA-G4-6309-01 1 100740396 100740396 G - RTCA Frame_Shift_Del p.G178Vfs*4 0.28 TCGA-G4-6309-01 1 102269836 102269836 A G OLFM3 Silent p.N445N 0.40 TCGA-G4-6309-01 1 103474067 103474067 C - COL11A1 Frame_Shift_Del p.P546Lfs*87 0.41 TCGA-G4-6309-01 1 103477980 103477980 G A COL11A1 Missense_Mutation p.P540S 0.39 unknown(0) TCGA-G4-6309-01 1 107691276 107691276 C G NTNG1 Missense_Mutation p.Q21E 0.35 tolerated(0.06) probably_damaging(0.983) TCGA-G4-6309-01 1 109795999 109795999 G A CELSR2 Missense_Mutation p.V1100M 0.67 deleterious(0.01) probably_damaging(0.975) TCGA-G4-6309-01 1 110051414 110051414 C T AMIGO1 Missense_Mutation p.A41T 0.37 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 1 110300471 110300471 G A EPS8L3 Nonsense_Mutation p.Q284* 0.38 TCGA-G4-6309-01 1 110882385 110882385 A G RBM15 Missense_Mutation p.S120G 0.13 deleterious_low_confidence(0.03) benign(0.003) TCGA-G4-6309-01 1 111216296 111216296 C T KCNA3 Missense_Mutation p.R379H 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 1 11227537 11227537 C T MTOR Missense_Mutation p.G1431R 0.32 deleterious(0) probably_damaging(0.97) TCGA-G4-6309-01 1 118642238 118642240 GAA - SPAG17 In_Frame_Del p.L273del 0.32 TCGA-G4-6309-01 1 1231945 1231945 G A ACAP3 Silent p.G399G 0.55 TCGA-G4-6309-01 1 143767872 143767872 C T PPIAL4G 5'UTR 0.32 TCGA-G4-6309-01 1 145417377 145417378 TG - HFE2 3'UTR 0.45 TCGA-G4-6309-01 1 1469310 1469310 C T ATAD3A Missense_Mutation p.T588M 0.33 tolerated(0.21) benign(0.007) TCGA-G4-6309-01 1 150933069 150933069 A G SETDB1 Missense_Mutation p.K844R 0.36 deleterious(0.04) possibly_damaging(0.583) TCGA-G4-6309-01 1 151262974 151262974 G A ZNF687 Silent p.R1048R 0.27 TCGA-G4-6309-01 1 151318741 151318741 G - RFX5 Frame_Shift_Del p.P19Qfs*28 0.29 TCGA-G4-6309-01 1 151633278 151633278 T C SNX27 Silent p.C247C 0.19 TCGA-G4-6309-01 1 152275492 152275492 T C FLG Missense_Mutation p.H3957R 0.14 unknown(0) TCGA-G4-6309-01 1 152284723 152284723 G T FLG Missense_Mutation p.S880Y 0.37 benign(0.298) TCGA-G4-6309-01 1 153514107 153514107 G A S100A5 5'UTR 0.50 TCGA-G4-6309-01 1 154493907 154493907 G C TDRD10 Missense_Mutation p.R107S 0.38 tolerated(0.42) benign(0.007) TCGA-G4-6309-01 1 155921049 155921049 C T ARHGEF2 Silent p.Q758Q 0.52 TCGA-G4-6309-01 1 156256117 156256117 G A TMEM79 Missense_Mutation p.R275Q 0.40 tolerated(0.15) probably_damaging(0.934) TCGA-G4-6309-01 1 1563985 1563985 C T MIB2 Silent p.N810N 0.26 TCGA-G4-6309-01 1 156504979 156504979 G A IQGAP3 Silent p.D1161D 0.36 TCGA-G4-6309-01 1 15654669 15654669 A T FHAD1 Intron 0.25 TCGA-G4-6309-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.34 TCGA-G4-6309-01 1 156737833 156737833 C - PRCC Frame_Shift_Del p.P92Hfs*5 0.25 TCGA-G4-6309-01 1 158152005 158152005 G A CD1D Nonsense_Mutation p.W171* 0.37 TCGA-G4-6309-01 1 159166909 159166909 T C CADM3 Intron 0.47 TCGA-G4-6309-01 1 159284290 159284290 G T OR10J3 Missense_Mutation p.H54N 0.37 deleterious(0.03) benign(0.014) TCGA-G4-6309-01 1 160062150 160062150 C T IGSF8 Missense_Mutation p.V550M 0.42 deleterious(0.05) possibly_damaging(0.715) TCGA-G4-6309-01 1 161019397 161019397 C T ARHGAP30 Silent p.S501S 0.32 TCGA-G4-6309-01 1 161184003 161184004 - C NDUFS2 3'UTR 0.34 TCGA-G4-6309-01 1 16385073 16385073 C T FAM131C Silent p.P234P 0.33 TCGA-G4-6309-01 1 165380011 165380011 C T RXRG Missense_Mutation p.V281I 0.35 tolerated(0.11) probably_damaging(0.989) TCGA-G4-6309-01 1 169823436 169823436 T C SCYL3 Missense_Mutation p.K715R 0.40 deleterious(0.04) probably_damaging(0.973) TCGA-G4-6309-01 1 170941023 170941023 C T MROH9 Silent p.N205N 0.41 TCGA-G4-6309-01 1 171753444 171753444 G A METTL13 Missense_Mutation p.E240K 0.19 tolerated(0.27) benign(0.003) TCGA-G4-6309-01 1 171958222 171958222 A G DNM3 Missense_Mutation p.T175A 0.08 deleterious(0.01) possibly_damaging(0.549) TCGA-G4-6309-01 1 182026094 182026094 C T ZNF648 Missense_Mutation p.R351H 0.33 tolerated(0.31) benign(0.063) TCGA-G4-6309-01 1 183617186 183617188 AGA - APOBEC4 In_Frame_Del p.L244del 0.40 TCGA-G4-6309-01 1 186325419 186325419 A G TPR Silent p.H629H 0.39 TCGA-G4-6309-01 1 19181286 19181286 G A TAS1R2 Silent p.R226R 0.26 TCGA-G4-6309-01 1 197411499 197411499 G A CRB1 Intron 0.24 TCGA-G4-6309-01 1 19746161 19746161 G A CAPZB Silent p.I29I 0.43 TCGA-G4-6309-01 1 202985120 202985120 G A TMEM183A Missense_Mutation p.R187H 0.34 tolerated(0.08) benign(0.092) TCGA-G4-6309-01 1 205238152 205238152 C T TMCC2 Silent p.D274D 0.17 TCGA-G4-6309-01 1 20978956 20978956 G A DDOST Silent p.Y429Y 0.44 TCGA-G4-6309-01 1 21016693 21016693 G A KIF17 Missense_Mutation p.R457W 0.17 deleterious(0.01) benign(0.032) TCGA-G4-6309-01 1 212792489 212792489 C T ATF3 Intron 0.59 TCGA-G4-6309-01 1 215752423 215752423 C T KCTD3 Missense_Mutation p.R160W 0.35 deleterious(0) possibly_damaging(0.487) TCGA-G4-6309-01 1 215793922 215793922 A - KCTD3 Frame_Shift_Del p.S806Vfs*16 0.28 TCGA-G4-6309-01 1 220777410 220777410 T C MARK1 Silent p.G142G 0.42 TCGA-G4-6309-01 1 222801058 222801059 - A MIA3 Frame_Shift_Ins p.N168Kfs*3 0.24 TCGA-G4-6309-01 1 223813531 223813531 C T CAPN8 Silent p.A263A 0.33 TCGA-G4-6309-01 1 228509611 228509611 G A OBSCN Silent p.P5980P 0.22 TCGA-G4-6309-01 1 228598861 228598861 C T TRIM17 Missense_Mutation p.R181Q 0.47 tolerated(0.77) benign(0.005) TCGA-G4-6309-01 1 22974075 22974075 C T C1QC Silent p.C179C 0.56 TCGA-G4-6309-01 1 233161071 233161072 - GCA PCNXL2 In_Frame_Ins p.C1475dup 0.16 TCGA-G4-6309-01 1 23637409 23637409 G A HNRNPR Silent p.H483H 0.47 TCGA-G4-6309-01 1 24201494 24201494 A G CNR2 Missense_Mutation p.I205T 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 1 245006587 245006587 T - COX20 3'UTR 0.25 TCGA-G4-6309-01 1 247835730 247835730 A G OR13G1 Missense_Mutation p.I205T 0.36 deleterious(0.02) benign(0.055) TCGA-G4-6309-01 1 247920775 247920775 G A OR1C1 Nonsense_Mutation p.Q312* 0.33 TCGA-G4-6309-01 1 248004834 248004834 C T OR11L1 Missense_Mutation p.R122H 0.26 deleterious(0) possibly_damaging(0.828) TCGA-G4-6309-01 1 248020672 248020672 G A TRIM58 Missense_Mutation p.E42K 0.32 tolerated(0.32) benign(0.064) TCGA-G4-6309-01 1 248059288 248059288 G A OR2W3 Missense_Mutation p.V134M 0.35 deleterious(0) possibly_damaging(0.863) TCGA-G4-6309-01 1 248756156 248756156 A G OR2T10 Missense_Mutation p.L305P 0.42 deleterious(0.02) benign(0.112) TCGA-G4-6309-01 1 249151588 249151588 T G ZNF692 Missense_Mutation p.D112A 0.40 tolerated(0.39) benign(0.021) TCGA-G4-6309-01 1 26349755 26349755 G A EXTL1 Silent p.P206P 0.36 TCGA-G4-6309-01 1 27426905 27426905 C T SLC9A1 Missense_Mutation p.A781T 0.47 tolerated(0.16) benign(0.002) TCGA-G4-6309-01 1 28864346 28864346 C T RCC1 Missense_Mutation p.R396C 0.42 tolerated(0.12) benign(0.02) TCGA-G4-6309-01 1 29189589 29189589 G A OPRD1 Missense_Mutation p.A305T 0.47 deleterious(0.03) benign(0.378) TCGA-G4-6309-01 1 32119502 32119502 G A COL16A1 Silent p.G1500G 0.30 TCGA-G4-6309-01 1 32202284 32202286 AAG - BAI2 In_Frame_Del p.F1007del 0.29 TCGA-G4-6309-01 1 32800595 32800595 G A MARCKSL1 Missense_Mutation p.A64V 0.38 deleterious(0.01) benign(0.204) TCGA-G4-6309-01 1 33123147 33123147 C T RBBP4 Missense_Mutation p.A95V 0.31 tolerated(0.15) benign(0.005) TCGA-G4-6309-01 1 33955164 33955165 - C ZSCAN20 Frame_Shift_Ins p.G246Rfs*19 0.25 TCGA-G4-6309-01 1 36636587 36636587 C - MAP7D1 Frame_Shift_Del p.P23Qfs*33 0.31 TCGA-G4-6309-01 1 38056365 38056365 A C GNL2 Missense_Mutation p.V109G 0.34 deleterious(0) probably_damaging(0.997) TCGA-G4-6309-01 1 40535466 40535466 C - CAP1 Frame_Shift_Del p.Q306Kfs*36 0.10 TCGA-G4-6309-01 1 43200750 43200750 C A CLDN19 3'UTR 0.08 TCGA-G4-6309-01 1 43748434 43748434 G T C1orf210 3'UTR 0.23 TCGA-G4-6309-01 1 43748598 43748598 C T C1orf210 Missense_Mutation p.R67H 0.27 tolerated(0.2) benign(0.016) TCGA-G4-6309-01 1 43778983 43778983 G T TIE1 Missense_Mutation p.S702I 0.41 tolerated(0.52) benign(0.101) TCGA-G4-6309-01 1 44451283 44451283 A G B4GALT2 Missense_Mutation p.N349D 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-G4-6309-01 1 45478653 45478653 C T UROD Missense_Mutation p.P32L 0.45 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 1 52135135 52135135 C T OSBPL9 Silent p.D64D 0.36 TCGA-G4-6309-01 1 52498496 52498496 A G KTI12 Missense_Mutation p.L313S 0.32 deleterious(0) benign(0.06) TCGA-G4-6309-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.42 TCGA-G4-6309-01 1 62672751 62672751 G T L1TD1 Nonsense_Mutation p.E151* 0.35 TCGA-G4-6309-01 1 6271964 6271964 C - RNF207 Frame_Shift_Del p.H384Tfs*6 0.34 TCGA-G4-6309-01 1 62738993 62738993 T C KANK4 Missense_Mutation p.K595E 0.23 deleterious(0) possibly_damaging(0.636) TCGA-G4-6309-01 1 6285262 6285262 G A ICMT Missense_Mutation p.R245C 0.33 deleterious(0) probably_damaging(0.935) TCGA-G4-6309-01 1 64059284 64059284 G C PGM1 Missense_Mutation p.S42T 0.47 deleterious(0) possibly_damaging(0.502) TCGA-G4-6309-01 1 77042581 77042581 A C ST6GALNAC3 Intron 0.23 TCGA-G4-6309-01 1 8384692 8384692 C T SLC45A1 Silent p.Y101Y 0.38 TCGA-G4-6309-01 1 8418576 8418576 G A RERE Missense_Mutation p.A1340V 0.29 unknown(0) TCGA-G4-6309-01 1 85587468 85587468 A - WDR63 Frame_Shift_Del p.D653Tfs*13 0.19 TCGA-G4-6309-01 1 86173391 86173394 TTTC - ZNHIT6 Frame_Shift_Del p.E192Sfs*7 0.37 TCGA-G4-6309-01 1 899783 899783 G A KLHL17 Missense_Mutation p.V525M 0.40 deleterious(0) probably_damaging(0.979) TCGA-G4-6309-01 1 9307089 9307089 G T H6PD Missense_Mutation p.R231L 0.19 deleterious(0.01) possibly_damaging(0.796) TCGA-G4-6309-01 1 94496610 94496610 C T ABCA4 Missense_Mutation p.E1399K 0.32 tolerated(0.79) benign(0.386) TCGA-G4-6309-01 1 95657191 95657191 G A TMEM56 Missense_Mutation p.V187M 0.46 deleterious(0.03) possibly_damaging(0.605) TCGA-G4-6309-01 1 9833433 9833433 C T CLSTN1 Nonsense_Mutation p.W37* 0.50 TCGA-G4-6309-01 20 17434425 17434425 C T PCSK2 Silent p.S308S 0.48 TCGA-G4-6309-01 20 20055881 20055881 G A C20orf26 Silent p.V140V 0.10 TCGA-G4-6309-01 20 23473638 23473638 G A CST8 Missense_Mutation p.R92H 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 20 25459817 25459817 G A NINL Missense_Mutation p.A648V 0.34 deleterious(0.01) benign(0.259) TCGA-G4-6309-01 20 3007409 3007409 T C PTPRA Missense_Mutation p.V564A 0.19 deleterious(0) probably_damaging(0.995) TCGA-G4-6309-01 20 30433105 30433105 G A FOXS1 Missense_Mutation p.R81C 0.37 deleterious(0) probably_damaging(0.998) TCGA-G4-6309-01 20 30742931 30742931 T - TM9SF4 Frame_Shift_Del p.F425Lfs*7 0.31 TCGA-G4-6309-01 20 31375160 31375160 C - DNMT3B Frame_Shift_Del p.Y188Tfs*4 0.26 TCGA-G4-6309-01 20 31967334 31967334 A G CDK5RAP1 Missense_Mutation p.V347A 0.10 deleterious(0.02) benign(0.278) TCGA-G4-6309-01 20 32199119 32199119 G A CBFA2T2 Missense_Mutation p.R142Q 0.51 deleterious(0) probably_damaging(0.981) TCGA-G4-6309-01 20 32247751 32247751 G A NECAB3 Missense_Mutation p.R195C 0.23 deleterious(0) probably_damaging(0.957) TCGA-G4-6309-01 20 32358033 32358033 C T ZNF341 Silent p.G512G 0.48 TCGA-G4-6309-01 20 3356920 3356920 C T C20orf194 Missense_Mutation p.V105I 0.37 tolerated(0.07) benign(0.172) TCGA-G4-6309-01 20 33578924 33578924 G A MYH7B Missense_Mutation p.R770Q 0.50 probably_damaging(0.969) TCGA-G4-6309-01 20 33876334 33876334 G A FAM83C Missense_Mutation p.R246C 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 20 34809826 34809826 G A EPB41L1 Missense_Mutation p.R827Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 20 36841555 36841555 G - KIAA1755 Frame_Shift_Del p.R1165Gfs*38 0.25 TCGA-G4-6309-01 20 36954722 36954722 C T BPI Missense_Mutation p.P354L 0.41 deleterious(0.04) benign(0.168) TCGA-G4-6309-01 20 40899079 40899079 C T PTPRT Intron 0.40 TCGA-G4-6309-01 20 42143689 42143689 C - L3MBTL1 Frame_Shift_Del p.P161Qfs*39 0.34 TCGA-G4-6309-01 20 45841297 45841297 G - ZMYND8 Frame_Shift_Del p.A1141Pfs*? 0.39 TCGA-G4-6309-01 20 45853081 45853081 C T ZMYND8 Missense_Mutation p.A1003T 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6309-01 20 46313216 46313216 G A SULF2 Missense_Mutation p.R283C 0.36 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 20 47604861 47604861 C T ARFGEF2 Missense_Mutation p.A766V 0.37 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 20 48098857 48098857 C T KCNB1 Missense_Mutation p.R54H 0.42 tolerated(0.55) probably_damaging(1) TCGA-G4-6309-01 20 4864358 4864358 C T SLC23A2 Missense_Mutation p.A252T 0.45 tolerated(0.5) benign(0.016) TCGA-G4-6309-01 20 49199373 49199373 G A PTPN1 3'UTR 0.33 TCGA-G4-6309-01 20 50406788 50406788 C T SALL4 Missense_Mutation p.R745H 0.45 tolerated(0.1) benign(0.009) TCGA-G4-6309-01 20 54824247 54824247 G T MC3R Missense_Mutation p.M116I 0.09 tolerated(0.36) possibly_damaging(0.714) TCGA-G4-6309-01 20 55088433 55088433 C T RTFDC1 Silent p.D180D 0.25 TCGA-G4-6309-01 20 5560664 5560665 - T GPCPD1 Frame_Shift_Ins p.S155Ifs*2 0.10 TCGA-G4-6309-01 20 5924294 5924294 G A TRMT6 Missense_Mutation p.T193M 0.46 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 20 61594685 61594685 T C SLC17A9 Missense_Mutation p.V230A 0.11 tolerated(0.06) benign(0.02) TCGA-G4-6309-01 20 62340013 62340013 C T ZGPAT Silent p.G27G 0.62 TCGA-G4-6309-01 21 31654791 31654791 G T KRTAP24-1 Missense_Mutation p.Q154K 0.35 tolerated(0.17) possibly_damaging(0.621) TCGA-G4-6309-01 21 32185477 32185477 T C KRTAP8-1 Missense_Mutation p.Y21C 0.31 deleterious_low_confidence(0) possibly_damaging(0.456) TCGA-G4-6309-01 21 33060706 33060707 - TG SCAF4 Frame_Shift_Ins p.E653Qfs*24 0.37 TCGA-G4-6309-01 21 35469005 35469005 C T SLC5A3 Missense_Mutation p.P503L 0.41 deleterious(0) probably_damaging(0.998) TCGA-G4-6309-01 21 35477259 35477259 C A SLC5A3 3'UTR 0.45 TCGA-G4-6309-01 21 36088828 36088828 C T CLIC6 3'UTR 0.19 TCGA-G4-6309-01 21 37416200 37416200 G A SETD4 Missense_Mutation p.R261C 0.40 deleterious(0.01) possibly_damaging(0.697) TCGA-G4-6309-01 21 39817412 39817412 C T ERG Missense_Mutation p.V58I 0.50 tolerated(0.24) benign(0.002) TCGA-G4-6309-01 21 42617934 42617934 C T BACE2 Missense_Mutation p.R310C 0.34 deleterious(0) probably_damaging(0.997) TCGA-G4-6309-01 21 43857627 43857627 A G UBASH3A Missense_Mutation p.I475V 0.36 tolerated(0.56) benign(0.009) TCGA-G4-6309-01 21 44192596 44192597 - AG PDE9A Frame_Shift_Ins p.S582Efs*5 0.32 TCGA-G4-6309-01 21 45548260 45548260 G A PWP2 Missense_Mutation p.G831E 0.33 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 21 45564703 45564703 G A C21orf33 Missense_Mutation p.E227K 0.44 deleterious(0.03) possibly_damaging(0.756) TCGA-G4-6309-01 21 45994489 45994489 G A KRTAP10-4 Missense_Mutation p.G285D 0.38 deleterious(0.01) unknown(0) TCGA-G4-6309-01 22 18301010 18301010 G A MICAL3 Missense_Mutation p.R1473W 0.33 possibly_damaging(0.507) TCGA-G4-6309-01 22 19789574 19789574 C T GNB1L Missense_Mutation p.A228T 0.63 tolerated(0.15) benign(0.324) TCGA-G4-6309-01 22 20940105 20940105 G T MED15 Missense_Mutation p.W741L 0.27 tolerated(0.74) benign(0.067) TCGA-G4-6309-01 22 23264963 23264963 G C IGLC7 Missense_Mutation p.A67P 0.45 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-G4-6309-01 22 24095297 24095297 G A VPREB3 Silent p.H46H 0.44 TCGA-G4-6309-01 22 28196403 28196403 C - MN1 Frame_Shift_Del p.P45Lfs*8 0.37 TCGA-G4-6309-01 22 28378320 28378320 C T TTC28 Silent p.P2445P 0.52 TCGA-G4-6309-01 22 29935349 29935349 C T THOC5 Missense_Mutation p.R190H 0.44 deleterious(0) benign(0.064) TCGA-G4-6309-01 22 31013429 31013429 C T TCN2 Silent p.A351A 0.32 TCGA-G4-6309-01 22 31484886 31484886 C T SMTN Silent p.S134S 0.52 TCGA-G4-6309-01 22 38611057 38611057 C T MAFF 3'UTR 0.17 TCGA-G4-6309-01 22 40805061 40805061 G - SGSM3 Intron 0.29 TCGA-G4-6309-01 22 41621888 41621888 G A L3MBTL2 Missense_Mutation p.A483T 0.62 deleterious(0.02) possibly_damaging(0.559) TCGA-G4-6309-01 22 44028056 44028056 C T EFCAB6 Missense_Mutation p.V721M 0.34 tolerated(0.2) benign(0.003) TCGA-G4-6309-01 22 45795116 45795116 T - SMC1B Frame_Shift_Del p.K324Nfs*10 0.26 TCGA-G4-6309-01 22 50169387 50169387 C T BRD1 Missense_Mutation p.D949N 0.38 tolerated(0.14) benign(0.169) TCGA-G4-6309-01 22 50356391 50356391 G A PIM3 Missense_Mutation p.R224H 0.19 tolerated(0.14) benign(0.047) TCGA-G4-6309-01 22 50469156 50469156 G A TTLL8 Missense_Mutation p.R652W 0.61 deleterious(0) possibly_damaging(0.719) TCGA-G4-6309-01 22 50615962 50615962 C T PANX2 Missense_Mutation p.A274V 0.58 tolerated(0.29) benign(0.369) TCGA-G4-6309-01 22 50942319 50942319 C T LMF2 Missense_Mutation p.R578H 0.43 deleterious(0) probably_damaging(0.967) TCGA-G4-6309-01 2 100210627 100210627 G A AFF3 Missense_Mutation p.P524L 0.38 tolerated(0.08) benign(0.002) TCGA-G4-6309-01 2 101183001 101183001 C T PDCL3 Missense_Mutation p.R15C 0.19 deleterious(0.03) benign(0.24) TCGA-G4-6309-01 2 101186155 101186155 T A PDCL3 Missense_Mutation p.W114R 0.30 deleterious(0) probably_damaging(0.984) TCGA-G4-6309-01 2 101885690 101885690 C T CNOT11 Missense_Mutation p.R450C 0.46 deleterious(0) probably_damaging(0.996) TCGA-G4-6309-01 2 102507791 102507791 G A MAP4K4 3'Flank 0.17 TCGA-G4-6309-01 2 102632478 102632478 C T IL1R2 Missense_Mutation p.R160C 0.51 tolerated(0.06) probably_damaging(0.922) TCGA-G4-6309-01 2 102957160 102957160 C T IL1RL1 Missense_Mutation p.A161V 0.34 tolerated(0.35) benign(0.008) TCGA-G4-6309-01 2 10924435 10924435 G A PDIA6 Silent p.D424D 0.29 TCGA-G4-6309-01 2 109297179 109297179 C T LIMS1 Silent p.C334C 0.05 TCGA-G4-6309-01 2 10929899 10929899 G A PDIA6 Silent p.N272N 0.47 TCGA-G4-6309-01 2 113593785 113593785 C T IL1B Missense_Mutation p.A8T 0.48 tolerated(1) benign(0.004) TCGA-G4-6309-01 2 11798843 11798843 A G NTSR2 Missense_Mutation p.L332P 0.50 deleterious(0.01) benign(0.192) TCGA-G4-6309-01 2 11922443 11922443 G A LPIN1 Silent p.S407S 0.39 TCGA-G4-6309-01 2 125530481 125530481 C T CNTNAP5 Missense_Mutation p.A879V 0.33 tolerated(0.15) probably_damaging(0.964) TCGA-G4-6309-01 2 135170528 135170528 A G MGAT5 Missense_Mutation p.N540S 0.34 tolerated(0.71) benign(0.015) TCGA-G4-6309-01 2 139429083 139429083 G A NXPH2 Silent p.P68P 0.69 TCGA-G4-6309-01 2 142238098 142238098 G A LRP1B Silent p.P70P 0.25 TCGA-G4-6309-01 2 143713792 143713792 G A KYNU Silent p.T152T 0.35 TCGA-G4-6309-01 2 145147394 145147394 G A ZEB2 Missense_Mutation p.A1090V 0.29 deleterious(0.01) possibly_damaging(0.825) TCGA-G4-6309-01 2 152522696 152522696 C T NEB Missense_Mutation p.A1647T 0.27 benign(0.003) TCGA-G4-6309-01 2 152552144 152552144 G - NEB Frame_Shift_Del p.P541Lfs*16 0.35 TCGA-G4-6309-01 2 160697382 160697383 AG - LY75-CD302 Frame_Shift_Del p.L1122Dfs*6 0.24 TCGA-G4-6309-01 2 170094613 170094613 C T LRP2 Silent p.T1498T 0.42 TCGA-G4-6309-01 2 170460581 170460581 T - PPIG Frame_Shift_Del p.F12Lfs*115 0.31 TCGA-G4-6309-01 2 172291686 172291686 T C DCAF17 Missense_Mutation p.C74R 0.49 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 2 172945098 172945098 C T METAP1D Silent p.G324G 0.50 TCGA-G4-6309-01 2 177036379 177036380 GA - HOXD3 Frame_Shift_Del p.E226Dfs*38 0.27 TCGA-G4-6309-01 2 179397009 179397009 G A TTN Missense_Mutation p.T34778M 0.12 TCGA-G4-6309-01 2 182413447 182413447 G A CERKL Missense_Mutation p.R371W 0.43 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 2 191383683 191383683 C T TMEM194B Missense_Mutation p.R147Q 0.23 tolerated(0.22) benign(0.101) TCGA-G4-6309-01 2 196756382 196756382 T C DNAH7 Silent p.S1681S 0.39 TCGA-G4-6309-01 2 202698593 202698593 G - CDK15 Frame_Shift_Del p.G211Afs*15 0.18 TCGA-G4-6309-01 2 204305010 204305010 C T RAPH1 Missense_Mutation p.G968E 0.41 unknown(0) TCGA-G4-6309-01 2 207003255 207003255 G A NDUFS1 Missense_Mutation p.P463L 0.28 tolerated(0.19) benign(0.004) TCGA-G4-6309-01 2 207172246 207172246 A - ZDBF2 Frame_Shift_Del p.T1000Qfs*3 0.12 TCGA-G4-6309-01 2 208030328 208030329 - C KLF7 5'UTR 0.38 TCGA-G4-6309-01 2 219001694 219001694 G T CXCR2 3'UTR 0.52 TCGA-G4-6309-01 2 219134766 219134766 G - AAMP Frame_Shift_Del p.P15Hfs*5 0.28 TCGA-G4-6309-01 2 219746988 219746989 - GT WNT10A Frame_Shift_Ins p.R77Cfs*79 0.39 TCGA-G4-6309-01 2 233620987 233620987 G C GIGYF2 Missense_Mutation p.G108R 0.50 probably_damaging(0.999) TCGA-G4-6309-01 2 236706471 236706471 A - AGAP1 Frame_Shift_Del p.N248Ifs*28 0.27 TCGA-G4-6309-01 2 237103618 237103618 C T ASB18 Missense_Mutation p.R433H 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 2 238249551 238249551 C T COL6A3 Missense_Mutation p.A2670T 0.19 unknown(0) TCGA-G4-6309-01 2 239140866 239140866 A G AC016757.3 5'Flank 0.40 TCGA-G4-6309-01 2 241569775 241569775 G A GPR35 Missense_Mutation p.V167M 0.56 deleterious(0.02) benign(0.396) TCGA-G4-6309-01 2 241992588 241992588 C T SNED1 Missense_Mutation p.P701L 0.50 deleterious(0) possibly_damaging(0.893) TCGA-G4-6309-01 2 27277562 27277562 G A AGBL5 Missense_Mutation p.D206N 0.38 deleterious(0.04) possibly_damaging(0.824) TCGA-G4-6309-01 2 27440355 27440355 T C CAD 5'UTR 0.13 TCGA-G4-6309-01 2 27479305 27479305 G A SLC30A3 Silent p.L323L 0.29 TCGA-G4-6309-01 2 27677000 27677000 G A IFT172 Missense_Mutation p.A1187V 0.42 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 2 31360999 31360999 C - GALNT14 5'UTR 0.24 TCGA-G4-6309-01 2 32353548 32353548 C T SPAST Silent p.Y415Y 0.34 TCGA-G4-6309-01 2 33783783 33783783 A G RASGRP3 Missense_Mutation p.R584G 0.57 tolerated(0.2) benign(0.009) TCGA-G4-6309-01 2 3391628 3391628 C T TRAPPC12 Silent p.S78S 0.45 TCGA-G4-6309-01 2 33952683 33952683 C T AC009499.1 Intron 0.53 TCGA-G4-6309-01 2 38570599 38570599 T C ATL2 Silent p.P58P 0.27 TCGA-G4-6309-01 2 42180406 42180406 G A C2orf91 Silent p.L10L 0.54 TCGA-G4-6309-01 2 42720048 42720048 G A KCNG3 Silent p.N198N 0.40 TCGA-G4-6309-01 2 44457270 44457270 C T PPM1B Intron 0.07 TCGA-G4-6309-01 2 47085390 47085390 C T LINC01119 3'Flank 0.44 TCGA-G4-6309-01 2 61622109 61622109 C T USP34 Missense_Mutation p.R211H 0.39 deleterious(0) probably_damaging(0.976) TCGA-G4-6309-01 2 71036250 71036250 G A CLEC4F 3'UTR 0.39 TCGA-G4-6309-01 2 71191573 71191573 C - ATP6V1B1 Frame_Shift_Del p.I386Sfs*10 0.31 TCGA-G4-6309-01 2 71305448 71305448 G A NAGK Missense_Mutation p.G328D 0.23 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 2 71592682 71592682 G A ZNF638 Missense_Mutation p.S614N 0.09 tolerated(0.07) probably_damaging(0.982) TCGA-G4-6309-01 2 80816439 80816439 C T CTNNA2 Missense_Mutation p.A673V 0.43 tolerated(0.08) possibly_damaging(0.629) TCGA-G4-6309-01 2 84752851 84752851 A - DNAH6 Frame_Shift_Del p.M132Cfs*61 0.09 TCGA-G4-6309-01 2 85270720 85270720 G A KCMF1 Missense_Mutation p.D120N 0.33 deleterious(0.03) possibly_damaging(0.833) TCGA-G4-6309-01 2 85570384 85570384 G A RETSAT Missense_Mutation p.A605V 0.12 tolerated(0.07) benign(0.009) TCGA-G4-6309-01 2 89475970 89475970 G T IGKV2-24 Missense_Mutation p.P68T 0.35 deleterious(0.03) benign(0.018) TCGA-G4-6309-01 2 90212138 90212138 G A IGKV3D-11 Missense_Mutation p.G77D 0.21 deleterious(0.01) benign(0.213) TCGA-G4-6309-01 2 95753151 95753151 T C MRPS5 Missense_Mutation p.Q415R 0.12 deleterious(0.01) possibly_damaging(0.881) TCGA-G4-6309-01 2 97278258 97278258 C - KANSL3 Frame_Shift_Del p.V319* 0.29 TCGA-G4-6309-01 2 98388803 98388804 - T TMEM131 Frame_Shift_Ins p.L1469Tfs*5 0.27 TCGA-G4-6309-01 2 99778788 99778789 AG - LIPT1 Frame_Shift_Del p.K123Ifs*2 0.12 TCGA-G4-6309-01 3 100988356 100988356 T C IMPG2 Intron 0.21 TCGA-G4-6309-01 3 102153921 102153921 C A ZPLD1 5'UTR 0.41 TCGA-G4-6309-01 3 111639147 111639147 C T PHLDB2 Missense_Mutation p.L628F 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 3 111794225 111794226 - G TMPRSS7 Frame_Shift_Ins p.W491Lfs*71 0.19 TCGA-G4-6309-01 3 112998720 112998720 C T BOC Silent p.S690S 0.46 TCGA-G4-6309-01 3 114014581 114014581 G A TIGIT Missense_Mutation p.R84Q 0.46 tolerated(0.06) possibly_damaging(0.801) TCGA-G4-6309-01 3 115560755 115560755 C T LSAMP Missense_Mutation p.G286S 0.43 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 3 123023016 123023017 - G ADCY5 Frame_Shift_Ins p.L820Tfs*74 0.26 TCGA-G4-6309-01 3 123801129 123801129 G A KALRN Missense_Mutation p.S34N 0.32 benign(0.002) TCGA-G4-6309-01 3 124802860 124802860 C T SLC12A8 Silent p.A673A 0.14 TCGA-G4-6309-01 3 126137322 126137322 A G CCDC37 Missense_Mutation p.N147S 0.51 tolerated(0.51) benign(0.003) TCGA-G4-6309-01 3 126151971 126151973 AGG - CCDC37 In_Frame_Del p.E451del 0.29 TCGA-G4-6309-01 3 126733174 126733174 G A PLXNA1 Missense_Mutation p.A854T 0.26 tolerated(0.59) possibly_damaging(0.899) TCGA-G4-6309-01 3 128758617 128758617 C T EFCC1 Silent p.L575L 0.09 TCGA-G4-6309-01 3 129292499 129292499 G A PLXND1 Silent p.H925H 0.52 TCGA-G4-6309-01 3 133614297 133614297 C - RAB6B Frame_Shift_Del p.G5Efs*7 0.23 TCGA-G4-6309-01 3 135742039 135742039 C T PPP2R3A Intron 0.40 TCGA-G4-6309-01 3 136059330 136059330 T C STAG1 Intron 0.23 TCGA-G4-6309-01 3 140407284 140407284 G A TRIM42 Missense_Mutation p.S587N 0.59 tolerated(0.53) benign(0.111) TCGA-G4-6309-01 3 141917727 141917727 G A GK5 Nonsense_Mutation p.R154* 0.40 TCGA-G4-6309-01 3 142539837 142539837 C T PCOLCE2 Missense_Mutation p.A334T 0.40 deleterious(0.02) benign(0.168) TCGA-G4-6309-01 3 147131267 147131267 T C ZIC1 Missense_Mutation p.S425P 0.42 tolerated(0.32) benign(0.047) TCGA-G4-6309-01 3 150421560 150421560 C A FAM194A Missense_Mutation p.E42D 0.58 tolerated_low_confidence(0.32) benign(0.388) TCGA-G4-6309-01 3 150916324 150916324 G T GPR171 Missense_Mutation p.L284M 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6309-01 3 152881972 152881973 - T RAP2B 3'UTR 0.29 TCGA-G4-6309-01 3 169889147 169889147 T A PHC3 Intron 0.24 TCGA-G4-6309-01 3 172534602 172534602 G A ECT2 Missense_Mutation p.R877H 0.35 deleterious(0.01) benign(0.03) TCGA-G4-6309-01 3 179426712 179426712 G A USP13 Missense_Mutation p.V258M 0.39 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 3 183059407 183059407 G A MCF2L2 Missense_Mutation p.A96V 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-G4-6309-01 3 183695328 183695328 A G ABCC5 Missense_Mutation p.S461P 0.29 deleterious(0.03) possibly_damaging(0.682) TCGA-G4-6309-01 3 183898897 183898897 C T AP2M1 Missense_Mutation p.S197L 0.36 deleterious(0.03) benign(0.277) TCGA-G4-6309-01 3 184045633 184045633 G A EIF4G1 Missense_Mutation p.V1273M 0.23 deleterious(0) probably_damaging(0.973) TCGA-G4-6309-01 3 187088580 187088580 C T RTP4 Missense_Mutation p.R54W 0.38 tolerated(0.13) benign(0.012) TCGA-G4-6309-01 3 190039801 190039802 TT - CLDN1 Frame_Shift_Del p.K65Sfs*3 0.38 TCGA-G4-6309-01 3 194159626 194159627 - T ATP13A3 Frame_Shift_Ins p.Q596Tfs*5 0.25 TCGA-G4-6309-01 3 195609019 195609019 C T TNK2 Missense_Mutation p.D327N 0.33 tolerated(0.21) benign(0.026) TCGA-G4-6309-01 3 197401451 197401451 C T KIAA0226 3'Flank 0.37 TCGA-G4-6309-01 3 32032200 32032200 T C ZNF860 Silent p.C543C 0.25 TCGA-G4-6309-01 3 32932642 32932642 G A TRIM71 Missense_Mutation p.R649Q 0.50 tolerated(0.08) benign(0.241) TCGA-G4-6309-01 3 33663705 33663705 C T CLASP2 Missense_Mutation p.R369Q 0.42 deleterious(0) possibly_damaging(0.897) TCGA-G4-6309-01 3 35785349 35785349 C A ARPP21 Missense_Mutation p.P643T 0.39 tolerated(0.19) benign(0.001) TCGA-G4-6309-01 3 36884181 36884181 C T TRANK1 Missense_Mutation p.V1694I 0.30 deleterious(0.03) possibly_damaging(0.788) TCGA-G4-6309-01 3 36898232 36898232 C T TRANK1 Missense_Mutation p.R950H 0.41 deleterious(0.05) probably_damaging(0.972) TCGA-G4-6309-01 3 39111231 39111231 C T WDR48 Missense_Mutation p.T223M 0.28 deleterious(0) probably_damaging(0.982) TCGA-G4-6309-01 3 39230014 39230014 C T XIRP1 Missense_Mutation p.R308H 0.25 deleterious(0.02) benign(0.344) TCGA-G4-6309-01 3 42299624 42299624 C T CCK Missense_Mutation p.R105H 0.34 deleterious(0) probably_damaging(0.991) TCGA-G4-6309-01 3 42908364 42908372 AGATTGATT GATTGA ACKR2 3'UTR 0.12 TCGA-G4-6309-01 3 45943725 45943725 G A CCR9 3'UTR 0.48 TCGA-G4-6309-01 3 4669538 4669538 C T ITPR1 Silent p.D85D 0.49 TCGA-G4-6309-01 3 4687362 4687362 C T ITPR1 Missense_Mutation p.R269W 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 3 46940795 46940795 G A PTH1R Silent p.A279A 0.47 TCGA-G4-6309-01 3 4747976 4747976 C T ITPR1 Missense_Mutation p.R1580C 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6309-01 3 48454004 48454004 C T PLXNB1 Missense_Mutation p.R1627H 0.41 deleterious(0.02) probably_damaging(1) TCGA-G4-6309-01 3 48884816 48884816 C T PRKAR2A Missense_Mutation p.A72T 0.42 tolerated(0.53) benign(0.001) TCGA-G4-6309-01 3 49145822 49145822 C - USP19 3'Flank 0.20 TCGA-G4-6309-01 3 49693909 49693909 G A BSN Missense_Mutation p.R2307Q 0.35 unknown(0) TCGA-G4-6309-01 3 50231251 50231251 G A GNAT1 Missense_Mutation p.R172H 0.29 tolerated(0.09) probably_damaging(1) TCGA-G4-6309-01 3 50311463 50311463 G A LSMEM2 5'Flank 0.48 TCGA-G4-6309-01 3 51452160 51452160 A G VPRBP Missense_Mutation p.I823T 0.41 deleterious(0) probably_damaging(0.983) TCGA-G4-6309-01 3 52413963 52413963 C T DNAH1 Missense_Mutation p.R2474C 0.36 probably_damaging(1) TCGA-G4-6309-01 3 52432063 52432063 A G DNAH1 Missense_Mutation p.T3992A 0.44 benign(0) TCGA-G4-6309-01 3 52526027 52526027 G A NISCH Silent p.L1348L 0.26 TCGA-G4-6309-01 3 52556631 52556631 C T STAB1 Missense_Mutation p.S2224L 0.24 deleterious(0.02) benign(0.426) TCGA-G4-6309-01 3 52559312 52559312 C A NT5DC2 Splice_Site p.X374_splice 0.38 TCGA-G4-6309-01 3 53757599 53757599 C T CACNA1D Missense_Mutation p.T622M 0.38 tolerated(0.17) probably_damaging(0.999) TCGA-G4-6309-01 3 56716784 56716784 G T FAM208A Missense_Mutation p.A84D 0.46 tolerated(0.06) possibly_damaging(0.474) TCGA-G4-6309-01 3 64526864 64526864 G A ADAMTS9 Missense_Mutation p.R1810C 0.33 deleterious(0) possibly_damaging(0.832) TCGA-G4-6309-01 3 65415266 65415266 T C MAGI1 Missense_Mutation p.H699R 0.30 deleterious(0) probably_damaging(0.99) TCGA-G4-6309-01 3 68588010 68588010 C T FAM19A1 Silent p.G121G 0.31 TCGA-G4-6309-01 3 7456772 7456772 G A GRM7 Missense_Mutation p.E366K 0.30 deleterious(0) probably_damaging(0.995) TCGA-G4-6309-01 3 89259220 89259220 C A EPHA3 Missense_Mutation p.L122M 0.32 tolerated(0.07) probably_damaging(0.997) TCGA-G4-6309-01 3 97851699 97851699 C A OR5H1 Missense_Mutation p.P53H 0.36 tolerated(0.17) benign(0.033) TCGA-G4-6309-01 3 9825723 9825723 G A TADA3 Silent p.H365H 0.39 TCGA-G4-6309-01 3 98304474 98304474 C T CPOX Missense_Mutation p.R328H 0.39 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 4 101344212 101344213 - T EMCN Frame_Shift_Ins p.N178Kfs*52 0.09 TCGA-G4-6309-01 4 102946373 102946373 C T BANK1 Missense_Mutation p.A434V 0.25 tolerated(0.11) benign(0.001) TCGA-G4-6309-01 4 103189225 103189225 T - SLC39A8 Frame_Shift_Del p.E285Sfs*8 0.25 TCGA-G4-6309-01 4 113436104 113436104 G A NEUROG2 Silent p.G176G 0.36 TCGA-G4-6309-01 4 119952606 119952606 G A SYNPO2 Silent p.T892T 0.26 TCGA-G4-6309-01 4 120243193 120243194 - T FABP2 Frame_Shift_Ins p.M22Nfs*4 0.25 TCGA-G4-6309-01 4 122766832 122766832 G A BBS7 Nonsense_Mutation p.Q353* 0.47 TCGA-G4-6309-01 4 1245880 1245880 A - CTBP1 5'Flank 0.36 TCGA-G4-6309-01 4 126336758 126336758 G A FAT4 Missense_Mutation p.A2214T 0.36 probably_damaging(0.977) TCGA-G4-6309-01 4 13584295 13584295 T C BOD1L1 Silent p.S2833S 0.38 TCGA-G4-6309-01 4 138449706 138449706 C T PCDH18 Missense_Mutation p.R889Q 0.27 tolerated(0.06) benign(0.195) TCGA-G4-6309-01 4 139965849 139965851 GAA - CCRN4L In_Frame_Del p.E174del 0.18 TCGA-G4-6309-01 4 146025661 146025661 C T ABCE1 Nonsense_Mutation p.R33* 0.49 TCGA-G4-6309-01 4 153244156 153244156 C - FBXW7 Frame_Shift_Del p.S668Vfs*39 0.29 TCGA-G4-6309-01 4 155157783 155157783 A T DCHS2 Missense_Mutation p.V2219D 0.27 deleterious(0) probably_damaging(0.992) TCGA-G4-6309-01 4 15689465 15689465 A - FAM200B Frame_Shift_Del p.N290Tfs*13 0.28 TCGA-G4-6309-01 4 158233974 158233974 C T GRIA2 Missense_Mutation p.R205W 0.36 deleterious(0) possibly_damaging(0.883) TCGA-G4-6309-01 4 1730219 1730219 A G TACC3 Missense_Mutation p.K364E 0.21 tolerated(0.06) benign(0.02) TCGA-G4-6309-01 4 17579167 17579167 C T LAP3 Missense_Mutation p.L27F 0.45 tolerated(0.74) benign(0.001) TCGA-G4-6309-01 4 175898434 175898434 C T ADAM29 Silent p.Y586Y 0.33 TCGA-G4-6309-01 4 177608586 177608586 C T VEGFC Silent p.R300R 0.18 TCGA-G4-6309-01 4 186423420 186423420 C G PDLIM3 3'UTR 0.28 TCGA-G4-6309-01 4 190947562 190947562 T G FRG2 Missense_Mutation p.K103T 0.05 tolerated(0.05) benign(0.265) TCGA-G4-6309-01 4 26483415 26483415 G A CCKAR Missense_Mutation p.R378C 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 4 2824671 2824671 G A SH3BP2 Missense_Mutation p.R106H 0.43 deleterious(0) probably_damaging(0.984) TCGA-G4-6309-01 4 2930259 2930259 C T ADD1 3'UTR 0.29 TCGA-G4-6309-01 4 30724227 30724227 A G PCDH7 Missense_Mutation p.K395E 0.15 tolerated(0.11) benign(0.037) TCGA-G4-6309-01 4 3418727 3418727 C T RGS12 Missense_Mutation p.R839C 0.28 deleterious(0) possibly_damaging(0.797) TCGA-G4-6309-01 4 37447352 37447352 G A KIAA1239 Missense_Mutation p.A1248T 0.34 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 4 3770126 3770126 G - ADRA2C 3'UTR 0.29 TCGA-G4-6309-01 4 41648294 41648294 A - LIMCH1 Frame_Shift_Del p.E420Sfs*61 0.08 TCGA-G4-6309-01 4 4239632 4239632 C T TMEM128 Silent p.S119S 0.26 TCGA-G4-6309-01 4 48384827 48384827 C T SLAIN2 Missense_Mutation p.R369W 0.20 deleterious(0) possibly_damaging(0.681) TCGA-G4-6309-01 4 54327145 54327145 C A LNX1 Missense_Mutation p.A706S 0.08 deleterious(0) possibly_damaging(0.816) TCGA-G4-6309-01 4 62758632 62758632 G A LPHN3 Missense_Mutation p.R512H 0.38 tolerated(0.31) benign(0.035) TCGA-G4-6309-01 4 69185865 69185865 G A YTHDC1 Missense_Mutation p.P554S 0.30 deleterious(0.01) benign(0.115) TCGA-G4-6309-01 4 71200766 71200766 G A CABS1 Missense_Mutation p.D4N 0.33 deleterious(0.04) probably_damaging(0.95) TCGA-G4-6309-01 4 72423492 72423492 C T SLC4A4 Missense_Mutation p.R943C 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 4 74864241 74864241 C T CXCL5 Missense_Mutation p.A20T 0.34 tolerated(0.31) benign(0.003) TCGA-G4-6309-01 4 80976541 80976541 A G ANTXR2 Silent p.G153G 0.38 TCGA-G4-6309-01 4 81188271 81188271 G A FGF5 Missense_Mutation p.G98D 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-G4-6309-01 4 83795904 83795904 G A SEC31A Missense_Mutation p.P167S 0.50 deleterious(0) probably_damaging(0.978) TCGA-G4-6309-01 4 84384668 84384668 C A FAM175A Nonsense_Mutation p.G259* 0.32 TCGA-G4-6309-01 4 85687086 85687086 T G WDFY3 Silent p.R1689R 0.18 TCGA-G4-6309-01 4 89338675 89338675 G A HERC6 Missense_Mutation p.E553K 0.32 tolerated(0.65) benign(0.053) TCGA-G4-6309-01 4 941630 941630 C T TMEM175 Missense_Mutation p.R35C 0.40 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 4 96761975 96761975 A T PDHA2 Missense_Mutation p.Y225F 0.44 tolerated(0.07) probably_damaging(0.972) TCGA-G4-6309-01 4 96762154 96762154 T C PDHA2 Missense_Mutation p.Y285H 0.44 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 4 9785349 9785349 G C DRD5 3'UTR 0.11 TCGA-G4-6309-01 5 112164586 112164586 C T APC Nonsense_Mutation p.R554* 0.38 TCGA-G4-6309-01 5 112175676 112175677 AG - APC Frame_Shift_Del p.S1465Wfs*3 0.33 TCGA-G4-6309-01 5 112362901 112362901 C A MCC 3'Flank 0.30 TCGA-G4-6309-01 5 126732228 126732228 C T MEGF10 Silent p.C139C 0.21 TCGA-G4-6309-01 5 130840407 130840407 T G RAPGEF6 Missense_Mutation p.K389T 0.41 deleterious(0) probably_damaging(0.998) TCGA-G4-6309-01 5 133316484 133316484 G A VDAC1 Nonsense_Mutation p.R163* 0.42 TCGA-G4-6309-01 5 137028043 137028043 G T KLHL3 Missense_Mutation p.L153M 0.11 deleterious(0) probably_damaging(0.995) TCGA-G4-6309-01 5 137485413 137485413 G - BRD8 Frame_Shift_Del p.P1065Lfs*29 0.11 TCGA-G4-6309-01 5 138643061 138643061 A T MATR3 5'UTR 0.64 TCGA-G4-6309-01 5 138643806 138643806 T - MATR3 Frame_Shift_Del p.F236Lfs*176 0.31 TCGA-G4-6309-01 5 138718244 138718244 A C SLC23A1 Missense_Mutation p.F29L 0.32 tolerated(0.75) benign(0) TCGA-G4-6309-01 5 140167484 140167484 G A PCDHA1 Missense_Mutation p.A537T 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G4-6309-01 5 140214419 140214419 C T PCDHA7 Missense_Mutation p.R151W 0.38 deleterious_low_confidence(0.01) benign(0.178) TCGA-G4-6309-01 5 140220992 140220992 G A PCDHA8 Missense_Mutation p.G29D 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.484) TCGA-G4-6309-01 5 140221979 140221979 C A PCDHA8 Missense_Mutation p.P358H 0.14 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-G4-6309-01 5 140242135 140242135 G A AC005609.1 3'UTR 0.30 TCGA-G4-6309-01 5 140249368 140249368 G A PCDHA11 Missense_Mutation p.R227Q 0.35 tolerated_low_confidence(1) benign(0.001) TCGA-G4-6309-01 5 140503070 140503070 T C PCDHB4 Missense_Mutation p.L497P 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.639) TCGA-G4-6309-01 5 140537240 140537240 C T PCDHB17 Missense_Mutation p.T555M 0.20 tolerated_low_confidence(0.08) possibly_damaging(0.608) TCGA-G4-6309-01 5 140558873 140558873 G A PCDHB8 Missense_Mutation p.V420I 0.22 tolerated_low_confidence(1) benign(0.001) TCGA-G4-6309-01 5 140565329 140565329 A - PCDHB16 3'UTR 0.36 TCGA-G4-6309-01 5 140604458 140604458 C T PCDHB14 Missense_Mutation p.R461C 0.45 deleterious_low_confidence(0.01) benign(0.16) TCGA-G4-6309-01 5 140712184 140712184 G A PCDHGA1 Missense_Mutation p.A645T 0.13 tolerated_low_confidence(0.06) benign(0.113) TCGA-G4-6309-01 5 140712241 140712241 G A PCDHGA1 Missense_Mutation p.V664M 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.473) TCGA-G4-6309-01 5 140719294 140719294 G A PCDHGA2 Silent p.P252P 0.20 TCGA-G4-6309-01 5 140735075 140735075 T C PCDHGA4 Missense_Mutation p.V103A 0.36 deleterious_low_confidence(0.03) benign(0.008) TCGA-G4-6309-01 5 140773999 140773999 C T PCDHGA8 Missense_Mutation p.P540L 0.37 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-G4-6309-01 5 141305002 141305002 C T KIAA0141 Silent p.S58S 0.27 TCGA-G4-6309-01 5 149435676 149435676 C G CSF1R Missense_Mutation p.A823P 0.14 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 5 154270969 154270969 G A GEMIN5 Missense_Mutation p.A1365V 0.41 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 5 156589663 156589663 A - FAM71B Frame_Shift_Del p.L538* 0.30 TCGA-G4-6309-01 5 159776736 159776736 G A C1QTNF2 Silent p.A144A 0.53 TCGA-G4-6309-01 5 168112760 168112760 C T SLIT3 Missense_Mutation p.V1163M 0.42 deleterious(0.03) benign(0.201) TCGA-G4-6309-01 5 169535250 169535250 G - FOXI1 Frame_Shift_Del p.G259Afs*27 0.36 TCGA-G4-6309-01 5 172590799 172590799 C T BNIP1 Missense_Mutation p.R231W 0.43 deleterious(0.01) probably_damaging(0.988) TCGA-G4-6309-01 5 17276098 17276098 T C BASP1 3'UTR 0.45 TCGA-G4-6309-01 5 176305271 176305271 G - UNC5A Frame_Shift_Del p.G634Dfs*3 0.24 TCGA-G4-6309-01 5 176793291 176793291 G A RGS14 Missense_Mutation p.V61M 0.52 deleterious(0) probably_damaging(0.988) TCGA-G4-6309-01 5 177158570 177158570 T G FAM153A Missense_Mutation p.S211R 0.66 deleterious_low_confidence(0.03) possibly_damaging(0.504) TCGA-G4-6309-01 5 177158580 177158580 C T FAM153A Silent p.T207T 0.64 TCGA-G4-6309-01 5 177310919 177310919 T C RP11-423H2.1 RNA 0.25 TCGA-G4-6309-01 5 178994481 178994481 C T RUFY1 Nonsense_Mutation p.R208* 0.40 TCGA-G4-6309-01 5 179290939 179290939 C T TBC1D9B Missense_Mutation p.A1088T 0.50 tolerated(0.32) benign(0) TCGA-G4-6309-01 5 180047888 180047888 C T FLT4 Missense_Mutation p.V763M 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-G4-6309-01 5 180051053 180051053 C T FLT4 Missense_Mutation p.R477Q 0.31 tolerated(0.07) possibly_damaging(0.603) TCGA-G4-6309-01 5 182427 182427 C T PLEKHG4B Missense_Mutation p.R1269C 0.46 tolerated_low_confidence(0.14) benign(0) TCGA-G4-6309-01 5 216844 216844 G A CCDC127 Missense_Mutation p.R41C 0.40 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 5 31538434 31538435 - A C5orf22 Frame_Shift_Ins p.P151Tfs*13 0.27 TCGA-G4-6309-01 5 32089287 32089287 G A PDZD2 Silent p.T1911T 0.38 TCGA-G4-6309-01 5 3599656 3599656 G T IRX1 Missense_Mutation p.K198N 0.31 deleterious(0.01) possibly_damaging(0.822) TCGA-G4-6309-01 5 36166763 36166763 A G SKP2 Missense_Mutation p.S179G 0.23 tolerated(0.39) benign(0.002) TCGA-G4-6309-01 5 37121880 37121880 C T C5orf42 Silent p.L2954L 0.51 TCGA-G4-6309-01 5 39316096 39316096 G A C9 Silent p.Y217Y 0.36 TCGA-G4-6309-01 5 43382115 43382115 G A CCL28 Silent p.H77H 0.05 TCGA-G4-6309-01 5 434495 434495 G A AHRR Missense_Mutation p.G569D 0.23 tolerated(0.07) possibly_damaging(0.511) TCGA-G4-6309-01 5 45645367 45645367 C G HCN1 Missense_Mutation p.V257L 0.43 tolerated(0.25) probably_damaging(0.992) TCGA-G4-6309-01 5 483447 483447 C T SLC9A3 Silent p.P361P 0.30 TCGA-G4-6309-01 5 50689461 50689462 - T ISL1 3'UTR 0.35 TCGA-G4-6309-01 5 5239326 5239326 C T ADAMTS16 Silent p.N739N 0.49 TCGA-G4-6309-01 5 54589863 54589867 CTCTT - DHX29 Frame_Shift_Del p.E253Gfs*5 0.39 TCGA-G4-6309-01 5 54654515 54654515 C T SKIV2L2 Nonsense_Mutation p.Q550* 0.10 TCGA-G4-6309-01 5 64097130 64097131 - A CWC27 Frame_Shift_Ins p.G253Rfs*2 0.19 TCGA-G4-6309-01 5 66462926 66462926 C T MAST4 3'UTR 0.25 TCGA-G4-6309-01 5 67591246 67591246 A G PIK3R1 Splice_Site p.X582_splice 0.38 TCGA-G4-6309-01 5 68669760 68669761 - A RAD17 Frame_Shift_Ins p.N51Kfs*37 0.32 TCGA-G4-6309-01 5 68715595 68715595 C T MARVELD2 Missense_Mutation p.S128L 0.48 tolerated(0.22) benign(0.178) TCGA-G4-6309-01 5 74066477 74066477 C T NSA2 Missense_Mutation p.P122S 0.41 deleterious(0.03) benign(0.037) TCGA-G4-6309-01 5 74970365 74970365 C T POC5 Silent p.R541R 0.29 TCGA-G4-6309-01 5 7867344 7867344 G - FASTKD3 Frame_Shift_Del p.L285Yfs*3 0.12 TCGA-G4-6309-01 5 7867625 7867625 T A FASTKD3 Missense_Mutation p.D191V 0.29 deleterious(0.02) probably_damaging(0.917) TCGA-G4-6309-01 5 78742883 78742883 G T HOMER1 Missense_Mutation p.P127H 0.49 tolerated(0.59) possibly_damaging(0.902) TCGA-G4-6309-01 5 83549938 83549938 A C EDIL3 Missense_Mutation p.F54V 0.18 deleterious(0) benign(0.197) TCGA-G4-6309-01 5 93076262 93076262 T C POU5F2 3'UTR 0.44 TCGA-G4-6309-01 5 96333740 96333740 G A LNPEP Missense_Mutation p.R515Q 0.45 tolerated(0.23) benign(0.273) TCGA-G4-6309-01 6 102483233 102483233 G A GRIK2 Silent p.T701T 0.40 TCGA-G4-6309-01 6 105845746 105845746 G A PREP Silent p.P34P 0.48 TCGA-G4-6309-01 6 10731012 10731012 A - TMEM14C 3'UTR 0.75 TCGA-G4-6309-01 6 110301266 110301266 C T GPR6 Silent p.P317P 0.51 TCGA-G4-6309-01 6 111214842 111214842 G A AMD1 3'UTR 0.36 TCGA-G4-6309-01 6 114181730 114181730 C - MARCKS Frame_Shift_Del p.P327Qfs*42 0.34 TCGA-G4-6309-01 6 116574759 116574759 C - TSPYL4 Frame_Shift_Del p.G138Afs*6 0.20 TCGA-G4-6309-01 6 128318068 128318069 - T PTPRK Frame_Shift_Ins p.N915Kfs*10 0.10 TCGA-G4-6309-01 6 13612048 13612048 C T SIRT5 Missense_Mutation p.T295M 0.34 deleterious(0.02) benign(0.194) TCGA-G4-6309-01 6 152461090 152461090 G A SYNE1 Missense_Mutation p.L8485F 0.30 benign(0.098) TCGA-G4-6309-01 6 155578990 155578990 C T TFB1M Missense_Mutation p.A341T 0.33 tolerated(0.57) benign(0.001) TCGA-G4-6309-01 6 157527948 157527948 C T ARID1B Silent p.D1891D 0.38 TCGA-G4-6309-01 6 158540137 158540137 C T SERAC1 Missense_Mutation p.R411H 0.32 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 6 159653970 159653970 G A FNDC1 Missense_Mutation p.R809Q 0.42 tolerated_low_confidence(0.17) unknown(0) TCGA-G4-6309-01 6 161132170 161132170 A - PLG Frame_Shift_Del p.N120Mfs*110 0.23 TCGA-G4-6309-01 6 161455304 161455304 T C MAP3K4 Silent p.L56L 0.28 TCGA-G4-6309-01 6 163984871 163984871 C T QKI Intron 0.38 TCGA-G4-6309-01 6 167571176 167571176 C T GPR31 Silent p.P48P 0.31 TCGA-G4-6309-01 6 168457900 168457900 G A FRMD1 Silent p.R509R 0.47 TCGA-G4-6309-01 6 22294679 22294679 G A PRL Missense_Mutation p.H55Y 0.36 deleterious(0) probably_damaging(0.988) TCGA-G4-6309-01 6 26659769 26659771 TAG - ZNF322 5'UTR 0.23 TCGA-G4-6309-01 6 28053334 28053334 G T ZNF165 Nonsense_Mutation p.E26* 0.45 TCGA-G4-6309-01 6 28212908 28212908 T - ZKSCAN4 Frame_Shift_Del p.T542Lfs*27 0.11 TCGA-G4-6309-01 6 31548718 31548718 C - LTB Frame_Shift_Del p.G168Afs*18 0.29 TCGA-G4-6309-01 6 3156360 3156360 A G TUBB2A Silent p.H28H 0.11 TCGA-G4-6309-01 6 31777883 31777883 C T HSPA1L Missense_Mutation p.G623R 0.38 deleterious_low_confidence(0.04) benign(0.204) TCGA-G4-6309-01 6 31829871 31829871 G A NEU1 Missense_Mutation p.P86L 0.43 deleterious(0.01) benign(0.411) TCGA-G4-6309-01 6 31914254 31914254 G A CFB Missense_Mutation p.A559T 0.44 tolerated(0.42) benign(0.01) TCGA-G4-6309-01 6 32018013 32018013 G A TNXB 5'Flank 0.44 TCGA-G4-6309-01 6 32035616 32035616 G A TNXB Silent p.F2122F 0.41 TCGA-G4-6309-01 6 32187496 32187496 G A NOTCH4 Silent p.C461C 0.25 TCGA-G4-6309-01 6 32549559 32549559 G T HLA-DRB1 Missense_Mutation p.L143I 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6309-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.46 TCGA-G4-6309-01 6 33043843 33043843 G C HLA-DPB1 Missense_Mutation p.A9P 0.47 deleterious(0.01) benign(0.01) TCGA-G4-6309-01 6 3324002 3324002 G A SLC22A23 Intron 0.32 TCGA-G4-6309-01 6 34855670 34855670 G A TAF11 Missense_Mutation p.A22V 0.46 tolerated(0.21) benign(0.001) TCGA-G4-6309-01 6 39835394 39835394 C T DAAM2 Silent p.G179G 0.44 TCGA-G4-6309-01 6 41704664 41704664 C - PGC Frame_Shift_Del p.D365Mfs*18 0.21 TCGA-G4-6309-01 6 42130747 42130747 G A RP1-139D8.6 Silent p.A48A 0.40 TCGA-G4-6309-01 6 42131115 42131115 C T GUCA1A 5'UTR 0.50 TCGA-G4-6309-01 6 43323499 43323499 G A ZNF318 Nonsense_Mutation p.R525* 0.20 TCGA-G4-6309-01 6 48036112 48036112 G - PTCHD4 Frame_Shift_Del p.L94Wfs*21 0.26 TCGA-G4-6309-01 6 49936507 49936507 C T DEFB113 Silent p.P44P 0.42 TCGA-G4-6309-01 6 74104878 74104878 G A DDX43 Missense_Mutation p.G84S 0.55 deleterious(0.04) possibly_damaging(0.54) TCGA-G4-6309-01 6 87725247 87725247 C T HTR1E Silent p.A65A 0.33 TCGA-G4-6309-01 6 87968053 87968053 T - ZNF292 Frame_Shift_Del p.P1571Qfs*7 0.09 TCGA-G4-6309-01 6 90340434 90340434 G A ANKRD6 Missense_Mutation p.R632H 0.43 deleterious(0) possibly_damaging(0.775) TCGA-G4-6309-01 6 90575923 90575923 C T CASP8AP2 RNA 0.09 TCGA-G4-6309-01 6 97587168 97587168 C T KLHL32 3'UTR 0.36 TCGA-G4-6309-01 7 100086482 100086482 C T NYAP1 Missense_Mutation p.R380W 0.36 deleterious(0.01) possibly_damaging(0.721) TCGA-G4-6309-01 7 100334605 100334605 C T ZAN Missense_Mutation p.R143C 0.36 possibly_damaging(0.89) TCGA-G4-6309-01 7 100459489 100459490 - G SLC12A9 Frame_Shift_Ins p.L559Afs*76 0.29 TCGA-G4-6309-01 7 100486985 100486985 C T UFSP1 5'UTR 0.33 TCGA-G4-6309-01 7 100776989 100776989 G A SERPINE1 Silent p.T238T 0.12 TCGA-G4-6309-01 7 100853419 100853419 G A PLOD3 Silent p.H546H 0.27 TCGA-G4-6309-01 7 103557602 103557602 C T RELN Missense_Mutation p.G86D 0.49 deleterious(0) possibly_damaging(0.481) TCGA-G4-6309-01 7 107838423 107838423 G A NRCAM Missense_Mutation p.A443V 0.49 deleterious(0.01) possibly_damaging(0.801) TCGA-G4-6309-01 7 119914757 119914757 C T KCND2 Missense_Mutation p.S24L 0.42 tolerated(0.18) benign(0.036) TCGA-G4-6309-01 7 119915485 119915485 G A KCND2 Missense_Mutation p.V267M 0.37 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 7 12420346 12420346 G T VWDE Silent p.A185A 0.08 TCGA-G4-6309-01 7 126173596 126173596 C T GRM8 Missense_Mutation p.V614M 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 7 12662430 12662430 T C SCIN Missense_Mutation p.L224S 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 7 127230156 127230156 C T ARF5 Missense_Mutation p.R99W 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-G4-6309-01 7 127234973 127234973 G A FSCN3 Intron 0.31 TCGA-G4-6309-01 7 137567349 137567349 G A CREB3L2 Silent p.Y432Y 0.46 TCGA-G4-6309-01 7 138418941 138418941 G A ATP6V0A4 Missense_Mutation p.S544L 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 7 138824639 138824639 T C TTC26 Missense_Mutation p.Y80H 0.40 deleterious(0) probably_damaging(0.969) TCGA-G4-6309-01 7 143095425 143095425 C T EPHA1 Missense_Mutation p.V485M 0.52 deleterious(0.02) possibly_damaging(0.852) TCGA-G4-6309-01 7 148427193 148427193 C T CUL1 5'UTR 0.67 TCGA-G4-6309-01 7 148876496 148876497 - C ZNF398 Frame_Shift_Ins p.C513Lfs*3 0.23 TCGA-G4-6309-01 7 149128952 149128952 C T ZNF777 Missense_Mutation p.R804Q 0.18 tolerated(0.09) probably_damaging(0.999) TCGA-G4-6309-01 7 149545103 149545103 G A ZNF862 Missense_Mutation p.R174Q 0.47 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G4-6309-01 7 158528251 158528251 G A ESYT2 Silent p.D843D 0.44 TCGA-G4-6309-01 7 1855697 1855697 G A MAD1L1 3'UTR 0.24 TCGA-G4-6309-01 7 21639557 21639557 G A DNAH11 Silent p.P940P 0.37 TCGA-G4-6309-01 7 22348029 22348031 TTC - RAPGEF5 In_Frame_Del p.E50del 0.25 TCGA-G4-6309-01 7 25175651 25175651 A G C7orf31 Silent p.N571N 0.43 TCGA-G4-6309-01 7 2564916 2564916 C T LFNG Missense_Mutation p.A182V 0.33 deleterious(0) possibly_damaging(0.904) TCGA-G4-6309-01 7 29963601 29963602 AC - SCRN1 Frame_Shift_Del p.V426* 0.32 TCGA-G4-6309-01 7 31746868 31746868 G A PPP1R17 Missense_Mutation p.E147K 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G4-6309-01 7 34125473 34125473 G A BMPER Missense_Mutation p.R505H 0.39 tolerated(0.09) benign(0.222) TCGA-G4-6309-01 7 35244134 35244134 G A TBX20 Silent p.Y317Y 0.35 TCGA-G4-6309-01 7 35289593 35289593 C A TBX20 Missense_Mutation p.G117V 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 7 43918139 43918139 G A URGCP Missense_Mutation p.S308L 0.36 deleterious(0) benign(0.072) TCGA-G4-6309-01 7 44664084 44664084 C T OGDH Missense_Mutation p.P48S 0.20 tolerated(0.69) probably_damaging(0.998) TCGA-G4-6309-01 7 44747227 44747228 - C OGDH Frame_Shift_Ins p.N950Qfs*3 0.21 TCGA-G4-6309-01 7 47694857 47694857 C T C7orf65 5'UTR 0.38 TCGA-G4-6309-01 7 4823933 4823933 C T AP5Z1 Nonsense_Mutation p.Q241* 0.32 TCGA-G4-6309-01 7 4839094 4839094 T C RADIL Missense_Mutation p.H1048R 0.44 tolerated(0.41) benign(0.004) TCGA-G4-6309-01 7 51287439 51287439 T A COBL Missense_Mutation p.S82C 0.28 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 7 6541478 6541478 G A GRID2IP Silent p.S1111S 0.55 TCGA-G4-6309-01 7 75398986 75398986 G A CCL26 3'UTR 0.45 TCGA-G4-6309-01 7 75616464 75616464 C A POR 3'Flank 0.31 TCGA-G4-6309-01 7 7678715 7678715 C T RPA3 Missense_Mutation p.E54K 0.39 deleterious(0.02) probably_damaging(0.983) TCGA-G4-6309-01 7 8167606 8167606 A G ICA1 Silent p.T409T 0.24 TCGA-G4-6309-01 7 82584605 82584605 T C PCLO Silent p.T1888T 0.36 TCGA-G4-6309-01 7 86803974 86803974 C T DMTF1 Missense_Mutation p.R170C 0.32 deleterious(0.01) possibly_damaging(0.772) TCGA-G4-6309-01 7 87174231 87174231 A G ABCB1 Missense_Mutation p.S658P 0.21 tolerated(0.19) benign(0.005) TCGA-G4-6309-01 7 87229457 87229459 TTC - ABCB1 In_Frame_Del p.K14del 0.32 TCGA-G4-6309-01 7 8791295 8791295 A T NXPH1 Missense_Mutation p.I238F 0.30 deleterious(0) probably_damaging(0.995) TCGA-G4-6309-01 7 88964566 88964566 G A ZNF804B Missense_Mutation p.C757Y 0.41 tolerated(0.13) benign(0.001) TCGA-G4-6309-01 7 89906607 89906607 A G C7orf63 Missense_Mutation p.N372D 0.37 deleterious(0.01) probably_damaging(0.972) TCGA-G4-6309-01 7 91603085 91603085 A - AKAP9 Frame_Shift_Del p.K39Rfs*17 0.50 TCGA-G4-6309-01 7 92207015 92207017 GAA - FAM133B In_Frame_Del p.S112del 0.36 TCGA-G4-6309-01 7 92763520 92763520 G A SAMD9L Nonsense_Mutation p.R589* 0.43 TCGA-G4-6309-01 7 98562317 98562317 G A TRRAP Missense_Mutation p.V2292I 0.09 benign(0.012) TCGA-G4-6309-01 7 99686910 99686910 T C COPS6 Intron 0.30 TCGA-G4-6309-01 8 101541940 101541940 C T ANKRD46 Missense_Mutation p.R41H 0.35 tolerated(0.09) benign(0.001) TCGA-G4-6309-01 8 101586120 101586120 A - SNX31 Frame_Shift_Del p.F432Lfs*4 0.11 TCGA-G4-6309-01 8 104330926 104330926 C T FZD6 Missense_Mutation p.R96C 0.46 deleterious(0) probably_damaging(0.992) TCGA-G4-6309-01 8 113241029 113241029 A - CSMD3 Frame_Shift_Del p.F3640Lfs*61 0.28 TCGA-G4-6309-01 8 121019092 121019092 C T DEPTOR Missense_Mutation p.P325L 0.42 deleterious(0) possibly_damaging(0.893) TCGA-G4-6309-01 8 121509723 121509723 A T MTBP Missense_Mutation p.Y513F 0.42 tolerated(0.71) benign(0) TCGA-G4-6309-01 8 131172111 131172111 C T ASAP1 Missense_Mutation p.G337R 0.19 deleterious(0) probably_damaging(0.999) TCGA-G4-6309-01 8 133941419 133941419 G A TG Missense_Mutation p.V1600M 0.28 deleterious(0) benign(0.021) TCGA-G4-6309-01 8 139890128 139890128 C T COL22A1 Missense_Mutation p.V175M 0.35 unknown(0) TCGA-G4-6309-01 8 144378518 144378518 G A ZNF696 Missense_Mutation p.A225T 0.62 tolerated(0.57) benign(0.018) TCGA-G4-6309-01 8 144808270 144808270 G A FAM83H Missense_Mutation p.R1121C 0.47 deleterious(0) possibly_damaging(0.724) TCGA-G4-6309-01 8 144917816 144917816 G T NRBP2 3'UTR 0.55 TCGA-G4-6309-01 8 144940301 144940301 C T EPPK1 Missense_Mutation p.R2374H 0.06 possibly_damaging(0.88) TCGA-G4-6309-01 8 144942362 144942362 G A EPPK1 Missense_Mutation p.T1687M 0.26 probably_damaging(1) TCGA-G4-6309-01 8 145724283 145724283 G A PPP1R16A Intron 0.30 TCGA-G4-6309-01 8 145726929 145726929 G A PPP1R16A Silent p.P410P 0.50 TCGA-G4-6309-01 8 146015182 146015182 C A RPL8 3'UTR 0.50 TCGA-G4-6309-01 8 21925112 21925112 C T DMTN Silent p.I56I 0.36 TCGA-G4-6309-01 8 21986166 21986166 G - HR Frame_Shift_Del p.P173Qfs*9 0.33 TCGA-G4-6309-01 8 22452177 22452177 C A PDLIM2 3'Flank 0.25 TCGA-G4-6309-01 8 22548630 22548630 G - EGR3 Frame_Shift_Del p.Q174Rfs*17 0.25 TCGA-G4-6309-01 8 27145504 27145504 G A TRIM35 Missense_Mutation p.R349C 0.42 tolerated(0.18) benign(0.015) TCGA-G4-6309-01 8 28413455 28413455 A G FZD3 Missense_Mutation p.Y585C 0.34 tolerated(0.18) benign(0.005) TCGA-G4-6309-01 8 38285481 38285482 - T FGFR1 Frame_Shift_Ins p.N224Kfs*8 0.29 TCGA-G4-6309-01 8 67577817 67577817 T - VCPIP1 Frame_Shift_Del p.A460Qfs*2 0.23 TCGA-G4-6309-01 8 74717931 74717931 G A UBE2W Nonsense_Mutation p.R173* 0.40 TCGA-G4-6309-01 8 77775961 77775961 G T ZFHX4 Missense_Mutation p.Q3337H 0.22 possibly_damaging(0.834) TCGA-G4-6309-01 8 80677568 80677570 GAG - HEY1 In_Frame_Del p.S261del 0.39 TCGA-G4-6309-01 8 81905415 81905415 G A PAG1 Silent p.T16T 0.35 TCGA-G4-6309-01 8 91952985 91952985 C T NECAB1 Intron 0.21 TCGA-G4-6309-01 8 93026957 93026957 G T RUNX1T1 Silent p.S117S 0.50 TCGA-G4-6309-01 8 99961348 99961348 G - OSR2 Frame_Shift_Del p.Y58Ifs*79 0.33 TCGA-G4-6309-01 9 100353693 100353693 G A TMOD1 Missense_Mutation p.A331T 0.29 deleterious(0.03) possibly_damaging(0.74) TCGA-G4-6309-01 9 101156496 101156496 C T GABBR2 Missense_Mutation p.D447N 0.37 tolerated(0.12) possibly_damaging(0.884) TCGA-G4-6309-01 9 101749651 101749651 G A COL15A1 Splice_Site p.X241_splice 0.62 TCGA-G4-6309-01 9 111855755 111855755 C T TMEM245 Missense_Mutation p.E306K 0.43 tolerated(0.26) benign(0.003) TCGA-G4-6309-01 9 112899163 112899163 C T PALM2-AKAP2 Silent p.L447L 0.48 TCGA-G4-6309-01 9 112963600 112963600 T C C9orf152 Silent p.P116P 0.25 TCGA-G4-6309-01 9 116750839 116750839 G A ZNF618 Missense_Mutation p.V106I 0.31 tolerated_low_confidence(0.07) benign(0.424) TCGA-G4-6309-01 9 116791143 116791143 G A ZNF618 Intron 0.39 TCGA-G4-6309-01 9 116810208 116810208 C T ZNF618 Nonsense_Mutation p.R335* 0.18 TCGA-G4-6309-01 9 117359931 117359931 C T ATP6V1G1 Missense_Mutation p.R89W 0.19 deleterious(0.01) benign(0.002) TCGA-G4-6309-01 9 117666360 117666360 C T TNFSF8 Missense_Mutation p.V186I 0.36 tolerated(1) benign(0.002) TCGA-G4-6309-01 9 117826075 117826075 C A TNC Nonsense_Mutation p.E1254* 0.48 TCGA-G4-6309-01 9 119144774 119144774 T C PAPPA Splice_Site p.X1592_splice 0.24 TCGA-G4-6309-01 9 123927347 123927347 C T CNTRL Silent p.N1850N 0.46 TCGA-G4-6309-01 9 124076273 124076273 C T GSN Missense_Mutation p.A293V 0.32 tolerated(0.32) benign(0) TCGA-G4-6309-01 9 124979525 124979525 G A LHX6 Silent p.Y168Y 0.25 TCGA-G4-6309-01 9 125887835 125887835 T C STRBP 3'UTR 0.36 TCGA-G4-6309-01 9 129455529 129455529 G A LMX1B Missense_Mutation p.R223Q 0.40 deleterious(0) probably_damaging(0.995) TCGA-G4-6309-01 9 130551553 130551553 C T CDK9 Missense_Mutation p.R284C 0.42 tolerated(0.06) benign(0.007) TCGA-G4-6309-01 9 130706913 130706913 C T FAM102A Missense_Mutation p.G364S 0.40 tolerated(1) benign(0.287) TCGA-G4-6309-01 9 131670513 131670513 G A LRRC8A Missense_Mutation p.R357H 0.48 deleterious(0) probably_damaging(0.987) TCGA-G4-6309-01 9 133954658 133954658 G A LAMC3 Silent p.T1300T 0.40 TCGA-G4-6309-01 9 135947053 135947053 G C CEL Missense_Mutation p.A725P 0.42 deleterious_low_confidence(0.01) benign(0.001) TCGA-G4-6309-01 9 136198936 136198936 G A SURF6 Silent p.D285D 0.56 TCGA-G4-6309-01 9 137019598 137019598 C - WDR5 Frame_Shift_Del p.V217Cfs*4 0.35 TCGA-G4-6309-01 9 138905135 138905135 G T NACC2 Missense_Mutation p.L389M 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 9 139273441 139273441 G T SNAPC4 Silent p.T946T 0.22 TCGA-G4-6309-01 9 139299598 139299598 T C SDCCAG3 Missense_Mutation p.Y317C 0.09 tolerated(0.17) benign(0.008) TCGA-G4-6309-01 9 139749919 139749919 G A MAMDC4 Missense_Mutation p.R440Q 0.57 tolerated(0.59) benign(0.058) TCGA-G4-6309-01 9 139915925 139915925 C A ABCA2 Missense_Mutation p.Q272H 0.37 tolerated_low_confidence(0.11) benign(0.435) TCGA-G4-6309-01 9 14842486 14842486 C T FREM1 Silent p.P522P 0.30 TCGA-G4-6309-01 9 19346603 19346603 G A DENND4C Missense_Mutation p.R1230H 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 9 2718404 2718404 C T KCNV2 Missense_Mutation p.A222V 0.47 deleterious(0.03) possibly_damaging(0.734) TCGA-G4-6309-01 9 334276 334276 C T DOCK8 Missense_Mutation p.R393C 0.41 deleterious(0) probably_damaging(0.998) TCGA-G4-6309-01 9 33935858 33935858 G A UBAP2 Nonsense_Mutation p.R650* 0.45 TCGA-G4-6309-01 9 35107547 35107547 C T FAM214B Missense_Mutation p.R242Q 0.34 deleterious(0) benign(0.016) TCGA-G4-6309-01 9 37034103 37034103 T C PAX5 5'UTR 0.21 TCGA-G4-6309-01 9 4663995 4663996 - A PPAPDC2 3'UTR 0.28 TCGA-G4-6309-01 9 4860210 4860210 G T RCL1 Missense_Mutation p.G353W 0.24 deleterious(0) possibly_damaging(0.877) TCGA-G4-6309-01 9 6013703 6013703 G A RANBP6 Silent p.I635I 0.29 TCGA-G4-6309-01 9 6814748 6814748 A G KDM4C Intron 0.13 TCGA-G4-6309-01 9 74764549 74764549 C A GDA Missense_Mutation p.P25H 0.44 tolerated(0.22) benign(0.311) TCGA-G4-6309-01 9 78854077 78854077 A G PCSK5 Silent p.G1023G 0.42 TCGA-G4-6309-01 9 79118204 79118205 - A GCNT1 Frame_Shift_Ins p.I305Nfs*15 0.31 TCGA-G4-6309-01 9 79875039 79875039 C T VPS13A Nonsense_Mutation p.R776* 0.10 TCGA-G4-6309-01 9 84564233 84564233 C A RP11-383M4.6 Intron 0.42 TCGA-G4-6309-01 9 84606953 84606953 G A SPATA31D1 Missense_Mutation p.R523H 0.38 tolerated(0.41) benign(0.003) TCGA-G4-6309-01 9 88577013 88577013 C T NAA35 Missense_Mutation p.A145V 0.43 tolerated(1) benign(0.03) TCGA-G4-6309-01 9 90321761 90321761 C T DAPK1 Missense_Mutation p.R1259W 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-G4-6309-01 9 95768397 95768397 G A FGD3 Missense_Mutation p.V258I 0.38 tolerated(0.06) possibly_damaging(0.59) TCGA-G4-6309-01 9 96009885 96009885 C T WNK2 Missense_Mutation p.R535C 0.39 unknown(0) TCGA-G4-6309-01 9 96312931 96312931 G A FAM120A Silent p.L744L 0.36 TCGA-G4-6309-01 9 96422563 96422563 G A PHF2 Silent p.P473P 0.34 TCGA-G4-6309-01 9 97333881 97333881 A G FBP2 Missense_Mutation p.S144P 0.30 tolerated(0.41) benign(0.079) TCGA-G4-6309-01 9 990871 990871 G A DMRT3 Missense_Mutation p.A429T 0.28 tolerated_low_confidence(0.25) benign(0) TCGA-G4-6309-01 X 10102590 10102590 G A WWC3 Missense_Mutation p.R906H 0.41 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 X 103268037 103268037 G A H2BFWT Missense_Mutation p.R66C 0.52 tolerated(0.08) benign(0.001) TCGA-G4-6309-01 X 107978988 107978988 C T IRS4 Missense_Mutation p.R196H 0.29 tolerated(0.07) benign(0.149) TCGA-G4-6309-01 X 114524368 114524368 C T LUZP4 Missense_Mutation p.P15S 0.14 tolerated(0.5) benign(0.013) TCGA-G4-6309-01 X 117815194 117815194 G T DOCK11 Missense_Mutation p.G1949C 0.37 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 X 118250467 118250467 A G KIAA1210 Silent p.T214T 0.06 TCGA-G4-6309-01 X 119077457 119077457 G A NKAP Missense_Mutation p.R38W 0.50 tolerated(0.2) probably_damaging(0.993) TCGA-G4-6309-01 X 120181767 120181767 G A GLUD2 Missense_Mutation p.G77S 0.43 tolerated(0.17) benign(0.016) TCGA-G4-6309-01 X 122459962 122459962 C T GRIA3 Silent p.D198D 0.38 TCGA-G4-6309-01 X 125686354 125686354 C A DCAF12L1 Missense_Mutation p.V80L 0.33 tolerated(0.15) benign(0.023) TCGA-G4-6309-01 X 13651160 13651160 C T EGFL6 Silent p.G537G 0.08 TCGA-G4-6309-01 X 138643914 138643914 G T F9 Missense_Mutation p.G357V 0.14 deleterious(0) probably_damaging(1) TCGA-G4-6309-01 X 144906894 144906894 T C SLITRK2 3'UTR 0.38 TCGA-G4-6309-01 X 149944738 149944738 G A CD99L2 Silent p.A188A 0.23 TCGA-G4-6309-01 X 153137805 153137805 G A L1CAM Missense_Mutation p.R68C 0.33 deleterious(0) probably_damaging(0.996) TCGA-G4-6309-01 X 153688563 153688563 G A PLXNA3 Missense_Mutation p.V14M 0.30 tolerated(0.34) benign(0.004) TCGA-G4-6309-01 X 153906384 153906385 - G GAB3 3'UTR 0.26 TCGA-G4-6309-01 X 154158816 154158816 C T F8 Missense_Mutation p.M1083I 0.10 tolerated(0.21) benign(0.009) TCGA-G4-6309-01 X 16775421 16775421 C T SYAP1 Missense_Mutation p.A307V 0.20 tolerated(0.27) benign(0.002) TCGA-G4-6309-01 X 17165605 17165605 C - REPS2 3'UTR 0.32 TCGA-G4-6309-01 X 17767616 17767616 A G SCML1 Missense_Mutation p.T99A 0.42 tolerated(0.11) benign(0.188) TCGA-G4-6309-01 X 21676335 21676335 G T KLHL34 5'UTR 0.29 TCGA-G4-6309-01 X 2700156 2700156 C T XG Silent p.P59P 0.41 TCGA-G4-6309-01 X 30261696 30261696 T - MAGEB4 3'UTR 0.22 TCGA-G4-6309-01 X 306400 306400 G A PPP2R3B Missense_Mutation p.A296V 0.09 deleterious(0.04) possibly_damaging(0.83) TCGA-G4-6309-01 X 31201004 31201004 C A DMD Missense_Mutation p.E3275D 0.34 benign(0.032) TCGA-G4-6309-01 X 47426415 47426415 C - ARAF Frame_Shift_Del p.R255Gfs*37 0.29 TCGA-G4-6309-01 X 48325229 48325229 C T SLC38A5 Silent p.S92S 0.37 TCGA-G4-6309-01 X 48371087 48371087 C T PORCN Silent p.N222N 0.42 TCGA-G4-6309-01 X 48386774 48386774 G - EBP Frame_Shift_Del p.V208* 0.25 TCGA-G4-6309-01 X 48419186 48419186 C T TBC1D25 Silent p.R630R 0.21 TCGA-G4-6309-01 X 48631922 48631922 C A GLOD5 3'UTR 0.28 TCGA-G4-6309-01 X 48814355 48814355 C T OTUD5 Missense_Mutation p.A160T 0.38 tolerated(0.17) benign(0.302) TCGA-G4-6309-01 X 48819730 48819730 G - KCND1 3'UTR 0.38 TCGA-G4-6309-01 X 48826168 48826168 G A KCND1 Missense_Mutation p.R171W 0.39 deleterious(0.01) possibly_damaging(0.696) TCGA-G4-6309-01 X 49370816 49370816 C T GAGE1 3'UTR 0.59 TCGA-G4-6309-01 X 51239141 51239141 C A NUDT11 Missense_Mutation p.M52I 0.24 tolerated(0.32) benign(0.035) TCGA-G4-6309-01 X 51639975 51639975 C T MAGED1 Silent p.P464P 0.50 TCGA-G4-6309-01 X 55478929 55478929 C T MAGEH1 Missense_Mutation p.A41V 0.22 deleterious_low_confidence(0) benign(0.002) TCGA-G4-6309-01 X 57021244 57021244 C T SPIN3 Missense_Mutation p.R46Q 0.22 tolerated(0.65) benign(0.001) TCGA-G4-6309-01 X 74494338 74494338 T C UPRT Silent p.G83G 0.16 TCGA-G4-6309-01 X 75004560 75004560 G T MAGEE2 Silent p.I109I 0.30 TCGA-G4-6309-01 X 83723819 83723819 C T HDX Silent p.E304E 0.35 TCGA-G4-6309-01 X 9622289 9622289 G A TBL1X Silent p.P46P 0.38 TCGA-G4-6310-01 10 103372099 103372099 G A FBXW4 Silent p.S324S 0.26 TCGA-G4-6310-01 10 104231154 104231154 G A TMEM180 Splice_Site p.X276_splice 0.19 TCGA-G4-6310-01 10 105214886 105214886 G A CALHM1 3'UTR 0.58 TCGA-G4-6310-01 10 106207489 106207489 G A CCDC147 Missense_Mutation p.V764I 0.15 tolerated(1) benign(0.003) TCGA-G4-6310-01 10 117824036 117824036 C T GFRA1 Missense_Mutation p.G424D 0.16 tolerated(0.23) benign(0.005) TCGA-G4-6310-01 10 18439809 18439809 T A CACNB2 Intron 0.14 TCGA-G4-6310-01 10 32320157 32320157 A T KIF5B Missense_Mutation p.N475K 0.20 tolerated(0.14) benign(0.036) TCGA-G4-6310-01 10 70661086 70661086 C T DDX50 5'UTR 0.59 TCGA-G4-6310-01 10 76803727 76803727 G A DUPD1 Silent p.H83H 0.26 TCGA-G4-6310-01 10 90974777 90974777 C T LIPA Silent p.P336P 0.18 TCGA-G4-6310-01 11 100141959 100141959 G A CNTN5 Missense_Mutation p.R767H 0.33 deleterious(0) probably_damaging(0.999) TCGA-G4-6310-01 11 105623793 105623793 G A GRIA4 Missense_Mutation p.A112T 0.30 tolerated(1) benign(0.276) TCGA-G4-6310-01 11 119149000 119149000 C T CBL Missense_Mutation p.S407F 0.33 deleterious(0) possibly_damaging(0.849) TCGA-G4-6310-01 11 121000854 121000854 C T TECTA Missense_Mutation p.R959W 0.38 deleterious(0.02) probably_damaging(0.948) TCGA-G4-6310-01 11 131781517 131781517 C T NTM Missense_Mutation p.R48W 0.31 deleterious(0) probably_damaging(0.921) TCGA-G4-6310-01 11 66062485 66062485 C T TMEM151A Silent p.R256R 0.33 TCGA-G4-6310-01 11 70653231 70653231 G C SHANK2 Missense_Mutation p.F514L 0.21 tolerated(0.88) benign(0.009) TCGA-G4-6310-01 12 113442743 113442743 G T OAS2 Missense_Mutation p.G395V 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6310-01 12 124856791 124856791 C T NCOR2 Missense_Mutation p.V862I 0.09 benign(0.028) TCGA-G4-6310-01 12 1346029 1346029 C T ERC1 Nonsense_Mutation p.R816* 0.30 TCGA-G4-6310-01 12 1895209 1895209 G A ADIPOR2 Missense_Mutation p.G378R 0.40 deleterious(0) benign(0.097) TCGA-G4-6310-01 12 45822945 45822945 C T ANO6 Missense_Mutation p.R883C 0.45 deleterious(0) possibly_damaging(0.631) TCGA-G4-6310-01 12 77421832 77421832 G A E2F7 Silent p.G657G 0.10 TCGA-G4-6310-01 12 85255570 85255570 G A SLC6A15 Silent p.H678H 0.42 TCGA-G4-6310-01 13 36245203 36245204 - A NBEA 3'UTR 0.24 TCGA-G4-6310-01 13 77853047 77853047 C T MYCBP2 Splice_Site p.X161_splice 0.05 TCGA-G4-6310-01 14 102506677 102506677 C T DYNC1H1 Missense_Mutation p.A3932V 0.27 benign(0.009) TCGA-G4-6310-01 14 42355885 42355885 C A LRFN5 Silent p.I19I 0.35 TCGA-G4-6310-01 14 70990473 70990473 G A ADAM20 Silent p.V384V 0.23 TCGA-G4-6310-01 14 76012998 76012998 C T BATF Missense_Mutation p.P121L 0.13 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-G4-6310-01 14 76621067 76621067 G A GPATCH2L Missense_Mutation p.A121T 0.19 tolerated(0.36) possibly_damaging(0.742) TCGA-G4-6310-01 15 22928483 22928483 A - CYFIP1 Frame_Shift_Del p.K121Nfs*2 0.10 TCGA-G4-6310-01 15 24921978 24921978 C T NPAP1 Missense_Mutation p.R322C 0.44 tolerated(0.1) benign(0.004) TCGA-G4-6310-01 15 67457635 67457635 G A SMAD3 Missense_Mutation p.E149K 0.32 tolerated(0.17) benign(0.005) TCGA-G4-6310-01 15 76196408 76196408 C T FBXO22 Missense_Mutation p.T35I 0.14 tolerated(0.08) benign(0.425) TCGA-G4-6310-01 15 77907925 77907925 G A LINGO1 Silent p.S108S 0.24 TCGA-G4-6310-01 16 16200654 16200654 C T ABCC1 Missense_Mutation p.A932V 0.25 tolerated(0.28) benign(0.097) TCGA-G4-6310-01 16 28997874 28997874 G A LAT Silent p.A144A 0.35 TCGA-G4-6310-01 16 3647390 3647390 C T SLX4 Missense_Mutation p.R558Q 0.31 tolerated(0.46) benign(0.005) TCGA-G4-6310-01 16 47622999 47622999 C G PHKB Missense_Mutation p.P352A 0.15 tolerated(0.11) probably_damaging(0.996) TCGA-G4-6310-01 16 5041892 5041892 G A SEC14L5 Silent p.S176S 0.25 TCGA-G4-6310-01 16 67681443 67681443 C T RLTPR Missense_Mutation p.A270V 0.36 deleterious(0.05) benign(0.018) TCGA-G4-6310-01 16 71122356 71122356 G A HYDIN Silent p.A506A 0.31 TCGA-G4-6310-01 16 72830135 72830135 C T ZFHX3 Missense_Mutation p.R2149H 0.30 probably_damaging(0.998) TCGA-G4-6310-01 16 84050779 84050779 C T SLC38A8 Missense_Mutation p.V307I 0.37 tolerated(0.62) benign(0.08) TCGA-G4-6310-01 17 14683223 14683223 G C AC005863.1 RNA 0.23 TCGA-G4-6310-01 17 2595866 2595866 T C CLUH Missense_Mutation p.D1107G 0.13 deleterious(0) probably_damaging(0.996) TCGA-G4-6310-01 17 33768255 33768255 T C SLFN13 Missense_Mutation p.K685E 0.04 deleterious(0.05) possibly_damaging(0.874) TCGA-G4-6310-01 17 34105995 34105995 C T MMP28 Silent p.G92G 0.16 TCGA-G4-6310-01 17 56435335 56435335 G T RNF43 Missense_Mutation p.S601Y 0.17 tolerated_low_confidence(0.33) benign(0.004) TCGA-G4-6310-01 17 57089695 57089695 C T TRIM37 Missense_Mutation p.E897K 0.15 deleterious_low_confidence(0.01) benign(0.137) TCGA-G4-6310-01 17 61995244 61995244 G A GH1 Missense_Mutation p.S111L 0.05 tolerated(0.1) benign(0.332) TCGA-G4-6310-01 17 62788507 62788507 C A PLEKHM1P RNA 0.40 TCGA-G4-6310-01 17 73643762 73643762 T C SMIM6 3'UTR 0.21 TCGA-G4-6310-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.50 tolerated(0.11) benign(0.308) TCGA-G4-6310-01 17 76511054 76511054 G A DNAH17 Silent p.N1301N 0.09 TCGA-G4-6310-01 18 67266712 67266712 G A DOK6 Silent p.S89S 0.48 TCGA-G4-6310-01 19 32971371 32971371 G T DPY19L3 Missense_Mutation p.D633Y 0.34 deleterious(0) probably_damaging(0.924) TCGA-G4-6310-01 19 43528842 43528842 C T PSG11 Splice_Site p.X144_splice 0.37 TCGA-G4-6310-01 19 44306517 44306517 G A LYPD5 Missense_Mutation p.P6S 0.06 tolerated_low_confidence(0.09) benign(0.236) TCGA-G4-6310-01 19 44834078 44834078 G C ZNF112 Missense_Mutation p.Q84E 0.18 tolerated(0.26) benign(0.002) TCGA-G4-6310-01 19 46394339 46394339 G A MYPOP Missense_Mutation p.R248W 0.62 tolerated(0.12) benign(0.333) TCGA-G4-6310-01 19 47342017 47342017 G A AP2S1 Silent p.L103L 0.59 TCGA-G4-6310-01 19 49703689 49703689 G A TRPM4 Missense_Mutation p.M926I 0.54 deleterious(0) probably_damaging(1) TCGA-G4-6310-01 19 51586106 51586106 C T KLK14 5'UTR 0.31 TCGA-G4-6310-01 19 6833228 6833228 C T VAV1 Silent p.N514N 0.36 TCGA-G4-6310-01 1 104203251 104203251 C T AMY1A Nonsense_Mutation p.R352* 0.16 TCGA-G4-6310-01 1 117559725 117559725 C T CD101 Silent p.V414V 0.26 TCGA-G4-6310-01 1 12336172 12336172 G A VPS13D Missense_Mutation p.V843M 0.14 probably_damaging(0.93) TCGA-G4-6310-01 1 144951990 144951990 G A PDE4DIP Intron 0.07 TCGA-G4-6310-01 1 145459652 145459652 C T POLR3GL Missense_Mutation p.D86N 0.23 deleterious(0) benign(0.313) TCGA-G4-6310-01 1 16073415 16073415 C T TMEM82 Missense_Mutation p.R271C 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6310-01 1 202457752 202457752 G A PPP1R12B Splice_Site p.X647_splice 0.24 TCGA-G4-6310-01 1 222713572 222713572 G C HHIPL2 Missense_Mutation p.H410Q 0.17 tolerated(0.05) benign(0.422) TCGA-G4-6310-01 1 34383882 34383882 T C CSMD2 Missense_Mutation p.T205A 0.42 deleterious(0.01) probably_damaging(0.927) TCGA-G4-6310-01 1 35906433 35906433 G A KIAA0319L Intron 0.21 TCGA-G4-6310-01 1 59249108 59249108 G A JUN 5'UTR 0.26 TCGA-G4-6310-01 1 75171995 75171995 C A CRYZ Missense_Mutation p.M325I 0.42 tolerated(0.64) benign(0.001) TCGA-G4-6310-01 1 82456675 82456675 G T LPHN2 Missense_Mutation p.S1353I 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6310-01 1 89615134 89615134 G T GBP7 Silent p.A331A 0.43 TCGA-G4-6310-01 20 2796343 2796343 G T C20orf141 Silent p.G140G 0.05 TCGA-G4-6310-01 20 31815413 31815413 C T BPIFA3 Missense_Mutation p.S252F 0.09 deleterious_low_confidence(0.05) benign(0.188) TCGA-G4-6310-01 20 32661668 32661668 G A RALY Missense_Mutation p.D125N 0.04 tolerated(0.12) benign(0.002) TCGA-G4-6310-01 20 37356949 37356949 C T SLC32A1 Silent p.R415R 0.10 TCGA-G4-6310-01 20 44506006 44506006 C T ZSWIM3 Missense_Mutation p.T270I 0.15 deleterious(0.02) possibly_damaging(0.833) TCGA-G4-6310-01 20 50307343 50307343 G A ATP9A Nonsense_Mutation p.R220* 0.05 TCGA-G4-6310-01 20 62160808 62160808 G A PTK6 3'UTR 0.17 TCGA-G4-6310-01 21 27269959 27269959 C G APP Missense_Mutation p.E664Q 0.35 tolerated(0.19) probably_damaging(0.942) TCGA-G4-6310-01 21 47769622 47769622 A G PCNT Missense_Mutation p.H411R 0.33 benign(0.001) TCGA-G4-6310-01 21 47842021 47842021 C T PCNT Missense_Mutation p.R2388C 0.23 benign(0.003) TCGA-G4-6310-01 22 19420185 19420185 C T MRPL40 Intron 0.21 TCGA-G4-6310-01 22 41752449 41752449 T A ZC3H7B Missense_Mutation p.I829N 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6310-01 2 163000592 163000592 T G GCG Missense_Mutation p.N161H 0.28 tolerated(0.14) benign(0.005) TCGA-G4-6310-01 2 1664755 1664755 A C PXDN Missense_Mutation p.L579V 0.21 deleterious(0) probably_damaging(0.927) TCGA-G4-6310-01 2 176964666 176964666 G A HOXD12 Missense_Mutation p.R46H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6310-01 2 179440599 179440599 C T TTN Silent p.P23420P 0.31 TCGA-G4-6310-01 2 1914053 1914053 G T MYT1L Nonsense_Mutation p.C590* 0.51 TCGA-G4-6310-01 2 25463524 25463524 G A DNMT3A Missense_Mutation p.R720C 0.16 deleterious(0) probably_damaging(0.998) TCGA-G4-6310-01 2 26534301 26534301 C T GPR113 Silent p.P765P 0.39 TCGA-G4-6310-01 2 70315061 70315061 C T PCBP1 Silent p.T62T 0.33 TCGA-G4-6310-01 2 9572708 9572708 C T CPSF3 Missense_Mutation p.T137I 0.23 tolerated(0.14) benign(0.097) TCGA-G4-6310-01 2 98994255 98994255 G T CNGA3 Silent p.G69G 0.22 TCGA-G4-6310-01 3 119242541 119242541 A G TIMMDC1 Missense_Mutation p.I266V 0.08 deleterious(0.04) probably_damaging(0.991) TCGA-G4-6310-01 3 123699147 123699147 C T ROPN1 Intron 0.21 TCGA-G4-6310-01 3 126268840 126268840 G C C3orf22 Missense_Mutation p.N99K 0.38 tolerated(0.09) benign(0.003) TCGA-G4-6310-01 3 133320111 133320111 G A TOPBP1 Nonsense_Mutation p.R1518* 0.05 TCGA-G4-6310-01 3 133692608 133692608 C T SLCO2A1 Missense_Mutation p.R99H 0.41 deleterious(0.01) probably_damaging(0.988) TCGA-G4-6310-01 3 167525105 167525105 G T SERPINI1 Missense_Mutation p.D319Y 0.14 deleterious(0.04) benign(0.008) TCGA-G4-6310-01 3 170912316 170912316 G A TNIK Missense_Mutation p.R139W 0.49 deleterious(0) unknown(0) TCGA-G4-6310-01 3 186289921 186289921 G T DNAJB11 Missense_Mutation p.A36S 0.15 deleterious(0) probably_damaging(0.998) TCGA-G4-6310-01 3 5220616 5220616 T C ARL8B 3'UTR 0.25 TCGA-G4-6310-01 3 73111421 73111421 C T EBLN2 Silent p.D63D 0.24 TCGA-G4-6310-01 3 9976017 9976017 C T CRELD1 Intron 0.15 TCGA-G4-6310-01 4 110667465 110667465 G A CFI Missense_Mutation p.R448C 0.25 tolerated(0.08) benign(0.308) TCGA-G4-6310-01 4 155411806 155411806 C T DCHS2 Silent p.P234P 0.12 TCGA-G4-6310-01 4 96761854 96761854 G A PDHA2 Missense_Mutation p.D185N 0.26 tolerated(0.54) benign(0.001) TCGA-G4-6310-01 5 112175255 112175255 G T APC Nonsense_Mutation p.E1322* 0.60 TCGA-G4-6310-01 5 140475991 140475991 C A PCDHB2 Silent p.G539G 0.62 TCGA-G4-6310-01 5 140559785 140559785 G A PCDHB8 Missense_Mutation p.G724S 0.23 tolerated_low_confidence(0.06) benign(0.048) TCGA-G4-6310-01 5 150945844 150945844 G A FAT2 Silent p.R883R 0.08 TCGA-G4-6310-01 5 156533930 156533930 G - HAVCR2 Frame_Shift_Del p.Y35Ifs*41 0.16 TCGA-G4-6310-01 5 159738920 159738920 T C CCNJL Missense_Mutation p.E4G 0.19 tolerated(0.14) benign(0.005) TCGA-G4-6310-01 5 176812815 176812815 C T SLC34A1 Nonsense_Mutation p.R25* 0.13 TCGA-G4-6310-01 5 178771029 178771029 C T ADAMTS2 Silent p.P91P 0.28 TCGA-G4-6310-01 5 19483628 19483628 C T CDH18 Missense_Mutation p.R555K 0.47 tolerated(0.06) benign(0.004) TCGA-G4-6310-01 5 21783536 21783536 C T CDH12 Missense_Mutation p.A442T 0.18 tolerated(0.53) benign(0.036) TCGA-G4-6310-01 5 23509096 23509096 T A PRDM9 5'UTR 0.44 TCGA-G4-6310-01 5 37000926 37000934 GAAAATGAA - NIPBL In_Frame_Del p.M1172_K1174del 0.13 TCGA-G4-6310-01 5 50683518 50683518 G T ISL1 Missense_Mutation p.R138M 0.16 deleterious(0.04) benign(0.027) TCGA-G4-6310-01 5 71756673 71756673 G A ZNF366 Silent p.A217A 0.21 TCGA-G4-6310-01 6 144508139 144508139 G A STX11 Silent p.A125A 0.20 TCGA-G4-6310-01 6 152631978 152631978 T C SYNE1 Missense_Mutation p.S5581G 0.24 benign(0) TCGA-G4-6310-01 6 32010334 32010334 G A TNXB Silent p.N465N 0.36 TCGA-G4-6310-01 6 56341081 56341081 G A DST Missense_Mutation p.L4621F 0.16 probably_damaging(0.984) TCGA-G4-6310-01 6 86181103 86181103 C T NT5E Silent p.D237D 0.14 TCGA-G4-6310-01 7 103123410 103123410 C T RELN Missense_Mutation p.R3397Q 0.28 tolerated(0.09) possibly_damaging(0.884) TCGA-G4-6310-01 7 107356131 107356131 G A SLC26A4 3'UTR 0.38 TCGA-G4-6310-01 7 120385898 120385898 G A KCND2 Missense_Mutation p.R511H 0.49 tolerated_low_confidence(0.5) benign(0.028) TCGA-G4-6310-01 7 139876560 139876560 C A KDM7A Missense_Mutation p.D60Y 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6310-01 7 143792809 143792809 G A OR2A12 Silent p.A203A 0.29 TCGA-G4-6310-01 7 42011983 42011983 G A GLI3 Missense_Mutation p.R686W 0.23 deleterious(0.01) possibly_damaging(0.776) TCGA-G4-6310-01 7 48260896 48260897 - T ABCA13 Frame_Shift_Ins p.T156Yfs*6 0.27 TCGA-G4-6310-01 7 5167353 5167353 C T ZNF890P RNA 0.17 TCGA-G4-6310-01 7 91630220 91630220 T A AKAP9 Missense_Mutation p.I330N 0.25 benign(0.009) TCGA-G4-6310-01 7 91752623 91752623 C T CYP51A1 Silent p.G299G 0.13 TCGA-G4-6310-01 7 98963622 98963622 C T ARPC1A 3'UTR 0.18 TCGA-G4-6310-01 8 134474159 134474159 C T ST3GAL1 Missense_Mutation p.G270S 0.57 probably_damaging(1) TCGA-G4-6310-01 8 140743132 140743132 T C TRAPPC9 3'UTR 0.31 TCGA-G4-6310-01 8 144993573 144993573 G A PLEC Silent p.G3609G 0.07 TCGA-G4-6310-01 8 146032712 146032712 G A ZNF517 Silent p.P137P 0.11 TCGA-G4-6310-01 8 22960731 22960731 G A TNFRSF10C Intron 0.38 TCGA-G4-6310-01 8 30614373 30614373 C T UBXN8 RNA 0.39 TCGA-G4-6310-01 8 77767084 77767084 G A ZFHX4 Missense_Mutation p.G2643R 0.17 probably_damaging(0.999) TCGA-G4-6310-01 8 8748672 8748672 G A MFHAS1 Missense_Mutation p.R633C 0.07 tolerated(0.2) benign(0) TCGA-G4-6310-01 8 92972467 92972467 C T RUNX1T1 3'UTR 0.12 TCGA-G4-6310-01 8 98725894 98725894 C G MTDH Nonsense_Mutation p.S426* 0.55 TCGA-G4-6310-01 9 117044776 117044776 G A COL27A1 Missense_Mutation p.V1271I 0.50 possibly_damaging(0.649) TCGA-G4-6310-01 9 117168839 117168839 C T DFNB31 Missense_Mutation p.G678S 0.12 tolerated(0.13) benign(0.423) TCGA-G4-6310-01 9 35842555 35842555 G A TMEM8B Silent p.P40P 0.44 TCGA-G4-6310-01 9 36170096 36170096 C T CCIN Silent p.S199S 0.16 TCGA-G4-6310-01 X 103495011 103495011 C T ESX1 Silent p.A373A 0.11 TCGA-G4-6310-01 X 114424964 114424964 G A RBMXL3 Silent p.P320P 0.70 TCGA-G4-6310-01 X 125685347 125685347 A G DCAF12L1 Silent p.D415D 0.69 TCGA-G4-6310-01 X 30260760 30260760 A T MAGEB4 Missense_Mutation p.N170Y 0.42 deleterious(0) possibly_damaging(0.767) TCGA-G4-6310-01 X 99917362 99917362 G A SRPX2 Missense_Mutation p.R118K 0.39 tolerated(0.51) probably_damaging(0.97) TCGA-G4-6311-01 10 118439101 118439101 G A HSPA12A Missense_Mutation p.P400L 0.23 deleterious(0) benign(0.301) TCGA-G4-6311-01 10 121595127 121595127 G A MCMBP Silent p.S546S 0.21 TCGA-G4-6311-01 10 13237083 13237083 A C MCM10 Silent p.P597P 0.22 TCGA-G4-6311-01 10 134598549 134598549 G A NKX6-2 Silent p.D235D 0.15 TCGA-G4-6311-01 10 27703027 27703027 C A PTCHD3 Silent p.P51P 0.24 TCGA-G4-6311-01 10 37430747 37430747 C T ANKRD30A Missense_Mutation p.P252S 0.15 tolerated(0.57) benign(0.022) TCGA-G4-6311-01 10 62671243 62671243 C T RHOBTB1 Missense_Mutation p.V20M 0.16 deleterious(0) probably_damaging(0.999) TCGA-G4-6311-01 10 73579996 73579996 C T PSAP Splice_Site p.X335_splice 0.16 TCGA-G4-6311-01 10 93749116 93749116 T C BTAF1 Missense_Mutation p.I878T 0.17 deleterious(0) possibly_damaging(0.848) TCGA-G4-6311-01 10 93749118 93749118 A T BTAF1 Nonsense_Mutation p.K879* 0.17 TCGA-G4-6311-01 11 102482487 102482487 T C MMP20 Silent p.G174G 0.11 TCGA-G4-6311-01 11 121000865 121000865 C T TECTA Silent p.S962S 0.21 TCGA-G4-6311-01 11 123513183 123513183 C T SCN3B Missense_Mutation p.R139Q 0.17 deleterious(0.02) benign(0.128) TCGA-G4-6311-01 11 124266369 124266369 G T OR8B3 Missense_Mutation p.N293K 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G4-6311-01 11 125875841 125875841 G A CDON Missense_Mutation p.P555L 0.25 deleterious(0.04) possibly_damaging(0.877) TCGA-G4-6311-01 11 2193021 2193021 C T TH 5'UTR 0.27 TCGA-G4-6311-01 11 33620660 33620660 G A KIAA1549L Intron 0.40 TCGA-G4-6311-01 11 43965019 43965019 G T C11orf96 3'Flank 0.38 TCGA-G4-6311-01 11 48181577 48181577 C A PTPRJ Silent p.T1178T 0.16 TCGA-G4-6311-01 11 5461820 5461820 A T OR51I1 Missense_Mutation p.F309I 0.14 deleterious(0.04) benign(0.046) TCGA-G4-6311-01 11 59132452 59132452 T C OR5AN1 Missense_Mutation p.V174A 0.27 deleterious(0.02) possibly_damaging(0.648) TCGA-G4-6311-01 11 65314942 65314942 C T LTBP3 Missense_Mutation p.R692Q 0.25 tolerated(0.07) benign(0.046) TCGA-G4-6311-01 11 66391834 66391834 G A RBM14 Missense_Mutation p.D163N 0.23 deleterious(0.03) benign(0.002) TCGA-G4-6311-01 11 71277469 71277469 G T KRTAP5-10 3'UTR 0.22 TCGA-G4-6311-01 11 92086050 92086050 C T FAT3 Missense_Mutation p.R258C 0.16 probably_damaging(0.999) TCGA-G4-6311-01 11 92523336 92523336 C T FAT3 Silent p.A1521A 0.24 TCGA-G4-6311-01 12 109577384 109577384 G T ACACB Silent p.P58P 0.21 TCGA-G4-6311-01 12 117922283 117922283 G A KSR2 Silent p.N796N 0.23 TCGA-G4-6311-01 12 130898840 130898840 G A RIMBP2 Nonsense_Mutation p.R828* 0.25 TCGA-G4-6311-01 12 39761707 39761707 C T KIF21A Missense_Mutation p.R193H 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6311-01 12 5021107 5021107 C T KCNA1 Missense_Mutation p.T188M 0.21 deleterious(0) probably_damaging(0.997) TCGA-G4-6311-01 12 6127924 6127924 C T VWF Missense_Mutation p.E1554K 0.14 tolerated(0.06) benign(0.005) TCGA-G4-6311-01 12 64895129 64895129 G T TBK1 Missense_Mutation p.D720Y 0.20 deleterious(0.02) probably_damaging(0.943) TCGA-G4-6311-01 13 111114645 111114645 G A COL4A2 Missense_Mutation p.V564I 0.15 benign(0.038) TCGA-G4-6311-01 13 114531664 114531664 C T GAS6 Silent p.A388A 0.15 TCGA-G4-6311-01 13 25280499 25280499 C G ATP12A Missense_Mutation p.S695R 0.14 deleterious(0.03) benign(0.426) TCGA-G4-6311-01 13 25744771 25744771 C T AMER2 Silent p.T329T 0.16 TCGA-G4-6311-01 13 32813985 32813985 C T FRY Silent p.D2218D 0.27 TCGA-G4-6311-01 13 32905069 32905069 A G BRCA2 Missense_Mutation p.Y232C 0.12 tolerated(0.22) benign(0.002) TCGA-G4-6311-01 13 33017091 33017091 A G N4BP2L2 Missense_Mutation p.L528S 0.14 deleterious(0.02) benign(0.032) TCGA-G4-6311-01 13 35644211 35644211 T C NBEA Missense_Mutation p.F469S 0.13 deleterious(0) probably_damaging(0.998) TCGA-G4-6311-01 13 37269421 37269421 T A SERTM1 Missense_Mutation p.I69N 0.15 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-G4-6311-01 13 58298960 58298960 C A PCDH17 Missense_Mutation p.D1004E 0.13 tolerated(0.66) benign(0.02) TCGA-G4-6311-01 13 61985580 61985580 C A PCDH20 Silent p.V884V 0.18 TCGA-G4-6311-01 13 67800943 67800943 C A PCDH9 Missense_Mutation p.A544S 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6311-01 13 78493495 78493495 C A EDNRB Intron 0.11 TCGA-G4-6311-01 14 20020028 20020028 A C POTEM Missense_Mutation p.C65G 0.18 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-G4-6311-01 14 42356001 42356001 T G LRFN5 Missense_Mutation p.L58W 0.12 deleterious(0) probably_damaging(1) TCGA-G4-6311-01 15 25959062 25959062 G A ATP10A Silent p.A701A 0.18 TCGA-G4-6311-01 15 40303504 40303504 A G EIF2AK4 Missense_Mutation p.E1239G 0.21 deleterious(0.01) possibly_damaging(0.856) TCGA-G4-6311-01 15 42140498 42140498 A C SPTBN5 3'UTR 0.27 TCGA-G4-6311-01 15 52066026 52066026 T A TMOD2 Missense_Mutation p.L134H 0.23 deleterious(0) probably_damaging(0.991) TCGA-G4-6311-01 15 83331579 83331579 A T AP3B2 Silent p.P881P 0.23 TCGA-G4-6311-01 16 20360504 20360504 G C UMOD Missense_Mutation p.T40S 0.15 tolerated(0.26) benign(0.107) TCGA-G4-6311-01 16 27224917 27224917 G A KDM8 Silent p.A208A 0.30 TCGA-G4-6311-01 16 3788618 3788618 G A CREBBP Missense_Mutation p.R1446C 0.29 unknown(0) TCGA-G4-6311-01 16 555543 555543 G A RAB11FIP3 Missense_Mutation p.R472H 0.13 tolerated(0.06) benign(0.372) TCGA-G4-6311-01 16 84214699 84214699 G T TAF1C Missense_Mutation p.H446N 0.20 tolerated(0.23) benign(0.006) TCGA-G4-6311-01 16 84230608 84230608 G A ADAD2 3'UTR 0.26 TCGA-G4-6311-01 17 33801953 33801953 A C SLFN12L Missense_Mutation p.F586V 0.09 unknown(0) TCGA-G4-6311-01 17 39506939 39506939 G A KRT33A Silent p.H27H 0.17 TCGA-G4-6311-01 17 40341548 40341548 T C GHDC 3'UTR 0.30 TCGA-G4-6311-01 17 40460337 40460337 A C STAT5A Missense_Mutation p.Y683S 0.26 deleterious(0) possibly_damaging(0.558) TCGA-G4-6311-01 17 46154267 46154267 C T CBX1 Missense_Mutation p.G34S 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6311-01 17 54431215 54431215 G T ANKFN1 Missense_Mutation p.A140S 0.14 tolerated(0.07) probably_damaging(0.98) TCGA-G4-6311-01 17 61613083 61613083 C T KCNH6 Silent p.R385R 0.23 TCGA-G4-6311-01 17 62022374 62022374 G A SCN4A Missense_Mutation p.S1256F 0.24 deleterious(0.01) probably_damaging(0.98) TCGA-G4-6311-01 17 67080492 67080492 C T ABCA6 Missense_Mutation p.C1422Y 0.17 deleterious(0) probably_damaging(0.987) TCGA-G4-6311-01 17 67210950 67210950 C G ABCA10 Missense_Mutation p.D301H 0.13 deleterious(0.05) benign(0.412) TCGA-G4-6311-01 17 70119762 70119763 - G SOX9 Frame_Shift_Ins p.R257Afs*39 0.13 TCGA-G4-6311-01 17 74003910 74003910 G T EVPL Silent p.I1792I 0.16 TCGA-G4-6311-01 17 7574022 7574022 A - TP53 Frame_Shift_Del p.E336Sfs*9 0.12 TCGA-G4-6311-01 17 78110099 78110099 C T EIF4A3 Missense_Mutation p.G340E 0.16 deleterious(0) probably_damaging(0.998) TCGA-G4-6311-01 17 78195547 78195547 T C SLC26A11 Missense_Mutation p.I63T 0.12 deleterious(0) possibly_damaging(0.884) TCGA-G4-6311-01 18 3456526 3456526 C A TGIF1 Nonsense_Mutation p.S193* 0.42 TCGA-G4-6311-01 18 64218338 64218338 A T CDH19 Missense_Mutation p.F256L 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-G4-6311-01 19 19448002 19448002 G A MAU2 Silent p.P128P 0.30 TCGA-G4-6311-01 19 21301012 21301012 T C ZNF714 Silent p.T514T 0.14 TCGA-G4-6311-01 19 21719838 21719838 T C ZNF429 Missense_Mutation p.L328P 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6311-01 19 22939405 22939405 G T ZNF99 3'Flank 0.16 TCGA-G4-6311-01 19 35169683 35169683 C T ZNF302 5'UTR 0.14 TCGA-G4-6311-01 19 35169700 35169700 T G ZNF302 5'UTR 0.15 TCGA-G4-6311-01 19 37382346 37382346 A - ZNF829 3'UTR 0.19 TCGA-G4-6311-01 19 43697516 43697516 A T PSG4 3'UTR 0.31 TCGA-G4-6311-01 19 47425573 47425573 G A ARHGAP35 Missense_Mutation p.R1214Q 0.25 tolerated(0.08) benign(0.062) TCGA-G4-6311-01 19 5231454 5231454 G T PTPRS Silent p.I674I 0.17 TCGA-G4-6311-01 19 56204061 56204061 C T EPN1 Missense_Mutation p.P445L 0.16 deleterious(0.03) possibly_damaging(0.592) TCGA-G4-6311-01 19 58018856 58018856 A G ZNF773 3'UTR 0.44 TCGA-G4-6311-01 1 1375505 1375505 C T VWA1 3'UTR 0.27 TCGA-G4-6311-01 1 154403053 154403053 G A IL6R Silent p.T143T 0.15 TCGA-G4-6311-01 1 159827968 159827968 C G VSIG8 Missense_Mutation p.M114I 0.13 tolerated(0.19) benign(0.048) TCGA-G4-6311-01 1 161496105 161496105 G T HSPA6 Missense_Mutation p.G553C 0.18 deleterious_low_confidence(0) benign(0.013) TCGA-G4-6311-01 1 175355235 175355235 G A TNR Silent p.Y570Y 0.15 TCGA-G4-6311-01 1 177226171 177226171 T A BRINP2 Intron 0.23 TCGA-G4-6311-01 1 192335075 192335075 G T RGS21 Missense_Mutation p.D94Y 0.14 deleterious(0) probably_damaging(0.987) TCGA-G4-6311-01 1 216500942 216500942 A C USH2A Missense_Mutation p.L280R 0.12 possibly_damaging(0.832) TCGA-G4-6311-01 1 228399472 228399472 C T OBSCN 5'UTR 0.42 TCGA-G4-6311-01 1 228467595 228467595 C T OBSCN Silent p.C2919C 0.16 TCGA-G4-6311-01 1 23689701 23689701 C A ZNF436 Missense_Mutation p.R58S 0.16 tolerated(0.98) benign(0.227) TCGA-G4-6311-01 1 237777976 237777976 G A RYR2 Missense_Mutation p.V1850M 0.40 probably_damaging(0.979) TCGA-G4-6311-01 1 248201776 248201776 C A OR2L2 Missense_Mutation p.D69E 0.16 deleterious(0.01) benign(0.417) TCGA-G4-6311-01 1 25824981 25824981 A T TMEM57 3'UTR 0.26 TCGA-G4-6311-01 1 25824983 25824983 A T TMEM57 3'UTR 0.24 TCGA-G4-6311-01 1 28233465 28233465 C A RPA2 Missense_Mutation p.D103Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-G4-6311-01 1 44395824 44395824 G A ST3GAL3 Silent p.Q422Q 0.20 TCGA-G4-6311-01 1 45163868 45163868 A G C1orf228 Missense_Mutation p.R137G 0.24 deleterious(0) possibly_damaging(0.86) TCGA-G4-6311-01 1 46496335 46496335 G A MAST2 Silent p.P870P 0.16 TCGA-G4-6311-01 1 6269537 6269537 G A RNF207 Missense_Mutation p.E231K 0.19 deleterious(0) possibly_damaging(0.901) TCGA-G4-6311-01 1 6525537 6525537 C T TNFRSF25 Silent p.K41K 0.20 TCGA-G4-6311-01 20 10633147 10633147 C G JAG1 Missense_Mutation p.E285D 0.10 tolerated(0.43) benign(0.001) TCGA-G4-6311-01 20 21689929 21689929 G A PAX1 Missense_Mutation p.G377S 0.11 tolerated_low_confidence(0.25) benign(0.096) TCGA-G4-6311-01 20 2778904 2778904 C T CPXM1 Missense_Mutation p.A162T 0.13 deleterious(0) probably_damaging(0.961) TCGA-G4-6311-01 20 30585070 30585070 G A XKR7 Missense_Mutation p.R517Q 0.46 tolerated(0.12) probably_damaging(0.97) TCGA-G4-6311-01 20 35177718 35177718 C A MYL9 3'UTR 0.10 TCGA-G4-6311-01 20 35742530 35742530 G C MROH8 Missense_Mutation p.R879G 0.09 tolerated(0.33) benign(0.4) TCGA-G4-6311-01 20 35748912 35748912 C T MROH8 Missense_Mutation p.V769M 0.11 deleterious(0.03) probably_damaging(0.96) TCGA-G4-6311-01 20 42887229 42887229 G A GDAP1L1 Missense_Mutation p.A177T 0.08 deleterious(0.05) probably_damaging(0.987) TCGA-G4-6311-01 20 45131581 45131581 G T ZNF334 Missense_Mutation p.P133T 0.11 tolerated(0.39) benign(0.107) TCGA-G4-6311-01 20 49620563 49620563 G A KCNG1 3'UTR 0.27 TCGA-G4-6311-01 20 62837113 62837113 G A MYT1 Silent p.T119T 0.27 TCGA-G4-6311-01 21 38528956 38528956 G C TTC3 Splice_Site p.X914_splice 0.27 TCGA-G4-6311-01 21 44838345 44838345 C T SIK1 Silent p.A513A 0.15 TCGA-G4-6311-01 22 37904686 37904686 C T CARD10 Missense_Mutation p.A305T 0.27 tolerated(0.05) benign(0.01) TCGA-G4-6311-01 22 50686483 50686483 A G HDAC10 Silent p.A391A 0.08 TCGA-G4-6311-01 22 50988717 50988717 G A KLHDC7B 3'UTR 0.13 TCGA-G4-6311-01 2 105924326 105924326 G A TGFBRAP1 Missense_Mutation p.R145C 0.17 deleterious(0) probably_damaging(0.988) TCGA-G4-6311-01 2 108476284 108476284 A C RGPD4 Missense_Mutation p.K581Q 0.13 tolerated(0.56) benign(0.016) TCGA-G4-6311-01 2 112656288 112656288 G T MERTK 5'UTR 0.26 TCGA-G4-6311-01 2 152426827 152426827 C A NEB Missense_Mutation p.R5733L 0.19 benign(0.07) TCGA-G4-6311-01 2 179495869 179495869 C T TTN Missense_Mutation p.D14636N 0.16 TCGA-G4-6311-01 2 182322423 182322423 C T ITGA4 Silent p.A14A 0.32 TCGA-G4-6311-01 2 182850701 182850701 G A PPP1R1C 5'UTR 0.26 TCGA-G4-6311-01 2 204599565 204599565 G A CD28 Missense_Mutation p.R198H 0.44 tolerated(0.57) benign(0.014) TCGA-G4-6311-01 2 215274986 215274986 G T SPAG16 Missense_Mutation p.G615W 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6311-01 2 26951289 26951289 G A KCNK3 Silent p.S346S 0.24 TCGA-G4-6311-01 2 3391991 3391991 C T TRAPPC12 Silent p.V199V 0.11 TCGA-G4-6311-01 3 101370252 101370252 C - ZBTB11 Frame_Shift_Del p.E974Nfs*14 0.10 TCGA-G4-6311-01 3 178916944 178916944 A G PIK3CA Missense_Mutation p.K111E 0.19 deleterious(0.03) probably_damaging(0.983) TCGA-G4-6311-01 3 38627368 38627368 C A SCN5A Missense_Mutation p.E867D 0.22 tolerated(0.45) benign(0.004) TCGA-G4-6311-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.38 deleterious(0) possibly_damaging(0.844) TCGA-G4-6311-01 3 51978827 51978827 C T PARP3 Missense_Mutation p.R186W 0.18 deleterious(0.03) benign(0.014) TCGA-G4-6311-01 3 52255657 52255657 C T TLR9 Missense_Mutation p.R1046Q 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-G4-6311-01 3 62355896 62355896 C A FEZF2 Missense_Mutation p.K414N 0.43 deleterious(0.03) benign(0.032) TCGA-G4-6311-01 3 7456772 7456772 G A GRM7 Missense_Mutation p.E366K 0.41 deleterious(0) probably_damaging(0.995) TCGA-G4-6311-01 3 77614137 77614137 C A ROBO2 Missense_Mutation p.A588E 0.17 deleterious(0) probably_damaging(0.947) TCGA-G4-6311-01 3 9932433 9932433 G A JAGN1 Silent p.A9A 0.29 TCGA-G4-6311-01 4 100871410 100871410 C T H2AFZ 5'UTR 0.24 TCGA-G4-6311-01 4 114290875 114290875 C T ANK2 Missense_Mutation p.R3842W 0.20 benign(0.019) TCGA-G4-6311-01 4 156764898 156764898 A C ASIC5 Missense_Mutation p.F266V 0.24 tolerated(0.27) benign(0.012) TCGA-G4-6311-01 4 15724519 15724519 C T BST1 Silent p.C271C 0.17 TCGA-G4-6311-01 4 170641312 170641312 G A CLCN3 3'UTR 0.23 TCGA-G4-6311-01 4 176733282 176733282 G - GPM6A Intron 0.16 TCGA-G4-6311-01 4 56831931 56831931 A G CEP135 Missense_Mutation p.Q317R 0.15 tolerated(0.12) benign(0.005) TCGA-G4-6311-01 4 86866 86866 G T Z95704.2 RNA 0.28 TCGA-G4-6311-01 5 112102031 112102032 - A APC Frame_Shift_Ins p.Q50Tfs*7 0.14 TCGA-G4-6311-01 5 132412427 132412427 G A HSPA4 Missense_Mutation p.G249R 0.48 tolerated(0.16) possibly_damaging(0.589) TCGA-G4-6311-01 5 134190611 134190611 C T C5orf24 Silent p.S7S 0.24 TCGA-G4-6311-01 5 140588683 140588683 T A PCDHB12 Silent p.S68S 0.19 TCGA-G4-6311-01 5 140725883 140725883 G A PCDHGA3 Silent p.A761A 0.20 TCGA-G4-6311-01 5 79616816 79616816 A C SPZ1 Missense_Mutation p.H261P 0.21 deleterious(0) probably_damaging(0.984) TCGA-G4-6311-01 6 114379247 114379247 C A HS3ST5 Missense_Mutation p.R72L 0.26 tolerated(0.13) benign(0.011) TCGA-G4-6311-01 6 152640020 152640020 A C SYNE1 Missense_Mutation p.V5456G 0.14 benign(0.031) TCGA-G4-6311-01 6 162683711 162683711 G A PARK2 Silent p.D86D 0.36 TCGA-G4-6311-01 6 31975104 31975104 C T C4A 3'Flank 0.21 TCGA-G4-6311-01 6 32021472 32021472 T G TNXB Silent p.A2826A 0.17 TCGA-G4-6311-01 6 4135743 4135743 A G ECI2 Splice_Site p.X17_splice 0.33 TCGA-G4-6311-01 6 46658125 46658125 A T TDRD6 Missense_Mutation p.N754Y 0.17 deleterious(0.04) benign(0.064) TCGA-G4-6311-01 6 50740359 50740359 T G TFAP2D Missense_Mutation p.L381V 0.12 deleterious(0) probably_damaging(0.992) TCGA-G4-6311-01 6 54208048 54208048 C A TINAG Missense_Mutation p.L217I 0.09 deleterious(0.03) benign(0.237) TCGA-G4-6311-01 6 55925748 55925748 G T COL21A1 Missense_Mutation p.P765T 0.14 tolerated(0.62) possibly_damaging(0.593) TCGA-G4-6311-01 6 71442124 71442124 C T SMAP1 Silent p.I54I 0.16 TCGA-G4-6311-01 6 74161446 74161446 G A MB21D1 Silent p.L153L 0.19 TCGA-G4-6311-01 6 91261894 91261894 A G MAP3K7 Silent p.T247T 0.21 TCGA-G4-6311-01 7 102854523 102854523 G A DPY19L2P2 RNA 0.13 TCGA-G4-6311-01 7 121650997 121650997 G T PTPRZ1 Missense_Mutation p.D633Y 0.39 deleterious_low_confidence(0.04) possibly_damaging(0.798) TCGA-G4-6311-01 7 139726011 139726011 G A PARP12 Missense_Mutation p.T589I 0.13 deleterious(0) probably_damaging(0.927) TCGA-G4-6311-01 7 149479317 149479317 C T SSPO RNA 0.19 TCGA-G4-6311-01 7 149482609 149482609 C T SSPO RNA 0.36 TCGA-G4-6311-01 7 18767243 18767243 G A HDAC9 Missense_Mutation p.R591H 0.20 tolerated(0.21) benign(0) TCGA-G4-6311-01 7 4247866 4247866 G A SDK1 Missense_Mutation p.A1784T 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6311-01 7 47915800 47915800 A T PKD1L1 Missense_Mutation p.F1227I 0.31 deleterious(0) probably_damaging(0.998) TCGA-G4-6311-01 7 53104298 53104298 G A POM121L12 3'UTR 0.18 TCGA-G4-6311-01 7 63809557 63809557 A G ZNF736 3'UTR 0.30 TCGA-G4-6311-01 7 66415947 66415947 C T TMEM248 Missense_Mutation p.P202L 0.18 tolerated(0.07) benign(0.054) TCGA-G4-6311-01 7 91707150 91707150 G A AKAP9 Silent p.T2302T 0.27 TCGA-G4-6311-01 8 113303845 113303845 G T CSMD3 Silent p.G2956G 0.25 TCGA-G4-6311-01 8 113323290 113323290 C T CSMD3 Missense_Mutation p.R2601Q 0.13 deleterious(0.01) possibly_damaging(0.853) TCGA-G4-6311-01 8 114290907 114290907 G T CSMD3 Missense_Mutation p.P143Q 0.11 tolerated(0.27) possibly_damaging(0.762) TCGA-G4-6311-01 8 116426872 116426872 C G TRPS1 Silent p.A1088A 0.12 TCGA-G4-6311-01 8 126023861 126023861 A T SQLE Silent p.S397S 0.12 TCGA-G4-6311-01 8 133112324 133112324 G A HHLA1 Missense_Mutation p.T102M 0.10 deleterious(0) probably_damaging(0.987) TCGA-G4-6311-01 8 37633515 37633515 C T PROSC Missense_Mutation p.S226F 0.09 deleterious(0) probably_damaging(0.995) TCGA-G4-6311-01 8 77617387 77617387 G T ZFHX4 Missense_Mutation p.G355V 0.16 probably_damaging(0.979) TCGA-G4-6311-01 8 87683280 87683280 C T CNGB3 Missense_Mutation p.D129N 0.39 tolerated(0.21) benign(0.044) TCGA-G4-6311-01 9 103339027 103339027 C T TMEFF1 3'UTR 0.21 TCGA-G4-6311-01 9 117555812 117555812 G A TNFSF15 Nonsense_Mutation p.Q83* 0.20 TCGA-G4-6311-01 9 136083888 136083888 G A OBP2B Silent p.G58G 0.23 TCGA-G4-6311-01 9 139686457 139686457 G A TMEM141 Silent p.L60L 0.20 TCGA-G4-6311-01 9 140245554 140245554 G A EXD3 Missense_Mutation p.P477L 0.28 deleterious(0) possibly_damaging(0.596) TCGA-G4-6311-01 9 464237 464237 C T DOCK8 3'UTR 0.39 TCGA-G4-6311-01 9 4664300 4664300 T G PPAPDC2 3'UTR 0.26 TCGA-G4-6311-01 9 96051433 96051433 G T WNK2 Missense_Mutation p.R1503M 0.19 unknown(0) TCGA-G4-6311-01 X 105875928 105875928 G T CXorf57 Missense_Mutation p.W351C 0.56 deleterious(0) possibly_damaging(0.827) TCGA-G4-6311-01 X 140996328 140996328 A C MAGEC1 Missense_Mutation p.K1046N 0.27 deleterious(0.01) unknown(0) TCGA-G4-6311-01 X 142795407 142795407 A G SPANXN2 Missense_Mutation p.S91P 0.59 tolerated(0.22) probably_damaging(0.997) TCGA-G4-6311-01 X 55117873 55117873 C G PAGE2 Missense_Mutation p.T101S 0.57 tolerated(0.25) benign(0.033) TCGA-G4-6311-01 X 78427094 78427094 C T GPR174 Missense_Mutation p.P197L 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6311-01 X 91132180 91132180 C A PCDH11X Missense_Mutation p.P314Q 0.50 tolerated(0.15) benign(0.213) TCGA-G4-6311-01 X 91132725 91132725 G T PCDH11X Missense_Mutation p.G496W 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 10 112839398 112839398 G C ADRA2A 3'UTR 0.17 TCGA-G4-6314-01 10 71332478 71332478 C T NEUROG3 Missense_Mutation p.G108S 0.39 tolerated(0.69) benign(0.015) TCGA-G4-6314-01 10 72360313 72360313 C A PRF1 Missense_Mutation p.A116S 0.21 tolerated(0.41) benign(0.007) TCGA-G4-6314-01 10 88421122 88421122 C T OPN4 Silent p.Y361Y 0.20 TCGA-G4-6314-01 11 113076860 113076860 C T NCAM1 Missense_Mutation p.R255W 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 11 20129252 20129252 C T NAV2 Missense_Mutation p.S2354L 0.13 tolerated(0.08) probably_damaging(0.98) TCGA-G4-6314-01 11 43284508 43284508 C T HNRNPKP3 RNA 0.30 TCGA-G4-6314-01 11 46907897 46907897 C A LRP4 Missense_Mutation p.K801N 0.29 tolerated(0.31) benign(0.266) TCGA-G4-6314-01 11 60197248 60197248 C G MS4A5 Nonsense_Mutation p.S34* 0.18 TCGA-G4-6314-01 11 60901536 60901536 C T VPS37C Silent p.E79E 0.10 TCGA-G4-6314-01 11 62156716 62156716 G A ASRGL1 Silent p.P201P 0.32 TCGA-G4-6314-01 11 6423864 6423864 C T APBB1 Missense_Mutation p.R399H 0.15 deleterious(0) possibly_damaging(0.778) TCGA-G4-6314-01 11 66833409 66833409 C G RHOD Missense_Mutation p.Q59E 0.09 tolerated(1) benign(0.006) TCGA-G4-6314-01 11 726690 726690 T - EPS8L2 Frame_Shift_Del p.V669Gfs*33 0.13 TCGA-G4-6314-01 11 7723274 7723274 C T OVCH2 Missense_Mutation p.R183H 0.23 tolerated(0.06) possibly_damaging(0.875) TCGA-G4-6314-01 11 8478943 8478943 C G STK33 Missense_Mutation p.E214D 0.04 deleterious(0.04) possibly_damaging(0.838) TCGA-G4-6314-01 11 96124207 96124207 C T JRKL Missense_Mutation p.R132W 0.20 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 12 109288094 109288094 C T DAO Missense_Mutation p.A188V 0.14 tolerated(0.05) benign(0.002) TCGA-G4-6314-01 12 113595412 113595412 G T CCDC42B Missense_Mutation p.K285N 0.43 deleterious(0.01) possibly_damaging(0.642) TCGA-G4-6314-01 12 132839154 132839154 G A GALNT9 Silent p.F159F 0.40 TCGA-G4-6314-01 12 24736886 24736886 C G LINC00477 RNA 0.53 TCGA-G4-6314-01 12 25378647 25378647 T G KRAS Missense_Mutation p.K117N 0.57 deleterious(0.01) probably_damaging(0.991) TCGA-G4-6314-01 12 28116320 28116320 A G PTHLH Missense_Mutation p.L162P 0.53 tolerated_low_confidence(0.16) benign(0) TCGA-G4-6314-01 12 346398 346398 G T SLC6A13 Missense_Mutation p.L208M 0.51 deleterious(0.05) possibly_damaging(0.718) TCGA-G4-6314-01 12 5153926 5153926 C G KCNA5 Missense_Mutation p.L205V 0.24 deleterious(0) possibly_damaging(0.618) TCGA-G4-6314-01 12 52078007 52078007 C T SCN8A Missense_Mutation p.T109M 0.23 deleterious(0) possibly_damaging(0.849) TCGA-G4-6314-01 12 56637030 56637030 C T ANKRD52 Missense_Mutation p.A1043T 0.28 tolerated(0.55) benign(0.004) TCGA-G4-6314-01 12 57859610 57859610 G A GLI1 Missense_Mutation p.E222K 0.24 deleterious(0.03) benign(0.254) TCGA-G4-6314-01 12 7639999 7639999 G A CD163 Missense_Mutation p.A669V 0.13 tolerated(0.47) possibly_damaging(0.794) TCGA-G4-6314-01 13 101184831 101184831 G A GGACT Silent p.F5F 0.25 TCGA-G4-6314-01 13 110435004 110435004 C T IRS2 Missense_Mutation p.A1133T 0.58 deleterious(0) probably_damaging(0.981) TCGA-G4-6314-01 13 112724226 112724226 T A SOX1 3'UTR 0.57 TCGA-G4-6314-01 13 25419168 25419168 C G RNF17 Missense_Mutation p.L1018V 0.24 deleterious(0.02) probably_damaging(0.973) TCGA-G4-6314-01 13 26542791 26542791 G A ATP8A2 Silent p.A1117A 0.20 TCGA-G4-6314-01 13 36402441 36402441 C G DCLK1 Silent p.S411S 0.49 TCGA-G4-6314-01 14 21971992 21971992 T C METTL3 Missense_Mutation p.T45A 0.17 tolerated(0.8) benign(0) TCGA-G4-6314-01 14 23863442 23863442 C T MYH6 Silent p.P840P 0.44 TCGA-G4-6314-01 14 93943997 93943997 C T UNC79 Missense_Mutation p.T4M 0.18 deleterious(0) probably_damaging(0.999) TCGA-G4-6314-01 15 27777818 27777818 G T GABRG3 Nonsense_Mutation p.E399* 0.37 TCGA-G4-6314-01 15 35084333 35084333 G A ACTC1 Missense_Mutation p.R256C 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-G4-6314-01 15 40308829 40308829 G C EIF2AK4 Missense_Mutation p.E1296Q 0.20 deleterious(0) probably_damaging(0.928) TCGA-G4-6314-01 15 75042347 75042347 C T CYP1A2 Missense_Mutation p.R90C 0.10 deleterious(0.01) possibly_damaging(0.524) TCGA-G4-6314-01 15 88423549 88423549 C A NTRK3 Missense_Mutation p.E762D 0.22 deleterious(0.01) probably_damaging(1) TCGA-G4-6314-01 16 1273425 1273425 G A TPSG1 Silent p.S81S 0.61 TCGA-G4-6314-01 16 14403167 14403167 G A MIR365A RNA 0.17 TCGA-G4-6314-01 16 18586419 18586419 C T RP11-457I16.2 5'Flank 0.44 TCGA-G4-6314-01 16 22330234 22330234 C T POLR3E Missense_Mutation p.A318V 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 16 29756126 29756126 G A C16orf54 Silent p.T49T 0.43 TCGA-G4-6314-01 16 3065929 3065929 C A CLDN6 Missense_Mutation p.V32L 0.36 deleterious(0.03) possibly_damaging(0.718) TCGA-G4-6314-01 16 53734629 53734629 C A RPGRIP1L Missense_Mutation p.G3C 0.73 tolerated(0.18) possibly_damaging(0.572) TCGA-G4-6314-01 16 72142153 72142153 C T DHX38 Missense_Mutation p.R998W 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 16 77233330 77233330 G T MON1B 3'UTR 0.33 TCGA-G4-6314-01 16 87678005 87678005 C T JPH3 Missense_Mutation p.T175M 0.23 deleterious(0.03) possibly_damaging(0.564) TCGA-G4-6314-01 17 18428638 18428638 T G FAM106A 3'UTR 0.22 TCGA-G4-6314-01 17 20799434 20799434 C T CCDC144NL 5'UTR 0.14 TCGA-G4-6314-01 17 29159317 29159317 G C ATAD5 5'UTR 0.33 TCGA-G4-6314-01 17 3524656 3524656 G A SHPK Missense_Mutation p.P233L 0.34 deleterious(0) possibly_damaging(0.794) TCGA-G4-6314-01 17 42225843 42225843 C T C17orf53 Silent p.S224S 0.31 TCGA-G4-6314-01 17 43003720 43003720 C T KIF18B Intron 0.29 TCGA-G4-6314-01 17 48652972 48652972 G A CACNA1G Silent p.Q403Q 0.13 TCGA-G4-6314-01 17 51900978 51900978 G A KIF2B Missense_Mutation p.R195H 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6314-01 17 70117813 70117813 G A SOX9 Missense_Mutation p.R94H 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6314-01 17 72832628 72832628 C T TMEM104 Silent p.T431T 0.17 TCGA-G4-6314-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.57 TCGA-G4-6314-01 18 10485721 10485721 G A APCDD1 Missense_Mutation p.R346H 0.31 tolerated(0.77) probably_damaging(0.983) TCGA-G4-6314-01 18 44559521 44559521 G A TCEB3B Silent p.L705L 0.50 TCGA-G4-6314-01 19 1387814 1387814 T A NDUFS7 Silent p.P7P 0.41 TCGA-G4-6314-01 19 20607763 20607763 G A ZNF826P RNA 0.44 TCGA-G4-6314-01 19 3203755 3203755 T A NCLN Missense_Mutation p.Y268N 0.40 deleterious(0.01) probably_damaging(0.948) TCGA-G4-6314-01 19 36219738 36219738 G T KMT2B Missense_Mutation p.Q1545H 0.17 probably_damaging(0.948) TCGA-G4-6314-01 19 37904971 37904971 G C ZNF569 Missense_Mutation p.Q197E 0.16 tolerated(0.24) benign(0.328) TCGA-G4-6314-01 19 3909545 3909545 G A ATCAY Missense_Mutation p.G237S 0.22 deleterious(0.02) probably_damaging(1) TCGA-G4-6314-01 19 39100587 39100587 C G MAP4K1 Missense_Mutation p.G297R 0.18 tolerated(0.45) benign(0.222) TCGA-G4-6314-01 19 408033 408033 T G C2CD4C Missense_Mutation p.H110P 0.24 deleterious(0.02) probably_damaging(0.988) TCGA-G4-6314-01 19 51961296 51961296 T A SIGLEC8 Nonsense_Mutation p.K116* 0.20 TCGA-G4-6314-01 19 7051413 7051413 G A MBD3L2 Missense_Mutation p.R136H 0.11 tolerated(1) benign(0.001) TCGA-G4-6314-01 1 118166011 118166011 G A FAM46C Missense_Mutation p.R174Q 0.20 deleterious(0) probably_damaging(0.992) TCGA-G4-6314-01 1 152085295 152085295 G C TCHH Missense_Mutation p.P133R 0.22 unknown(0) TCGA-G4-6314-01 1 152277361 152277361 C T FLG Missense_Mutation p.G3334E 0.21 unknown(0) TCGA-G4-6314-01 1 154523423 154523423 C T UBE2Q1 Missense_Mutation p.E410K 0.19 tolerated(0.07) benign(0.339) TCGA-G4-6314-01 1 177250193 177250193 G A BRINP2 Nonsense_Mutation p.W627* 0.20 TCGA-G4-6314-01 1 202544264 202544264 G T PPP1R12B Intron 0.33 TCGA-G4-6314-01 1 223284167 223284167 G C TLR5 Missense_Mutation p.P736R 0.38 deleterious(0) probably_damaging(0.994) TCGA-G4-6314-01 1 228353799 228353799 G A IBA57 Silent p.A94A 0.29 TCGA-G4-6314-01 1 228565369 228565369 A C OBSCN Missense_Mutation p.K8777T 0.20 benign(0.275) TCGA-G4-6314-01 1 237580378 237580378 C T RYR2 Missense_Mutation p.S268F 0.23 probably_damaging(0.961) TCGA-G4-6314-01 1 237659980 237659980 G A RYR2 Missense_Mutation p.E711K 0.46 possibly_damaging(0.539) TCGA-G4-6314-01 1 245850027 245850027 G A KIF26B Missense_Mutation p.V1248I 0.20 tolerated(0.32) unknown(0) TCGA-G4-6314-01 1 29485894 29485894 C G SRSF4 Missense_Mutation p.D119H 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-G4-6314-01 1 32221936 32221936 C T BAI2 Missense_Mutation p.E168K 0.23 tolerated(0.68) benign(0.205) TCGA-G4-6314-01 1 43205630 43205630 G A CLDN19 Silent p.Y35Y 0.32 TCGA-G4-6314-01 1 46871294 46871294 G A FAAH Missense_Mutation p.V205M 0.25 tolerated(0.06) benign(0.013) TCGA-G4-6314-01 1 87041173 87041173 C T CLCA4 Silent p.Y614Y 0.35 TCGA-G4-6314-01 1 94668200 94668200 C T ARHGAP29 Missense_Mutation p.R348H 0.27 deleterious(0) probably_damaging(0.998) TCGA-G4-6314-01 20 19654257 19654257 A C SLC24A3 Missense_Mutation p.L242F 0.17 deleterious(0) probably_damaging(0.986) TCGA-G4-6314-01 20 3650239 3650239 G C ADAM33 Missense_Mutation p.H762Q 0.13 tolerated(0.11) benign(0.011) TCGA-G4-6314-01 20 3679871 3679871 C T SIGLEC1 Silent p.S588S 0.15 TCGA-G4-6314-01 20 42331534 42331534 G A MYBL2 Silent p.S452S 0.14 TCGA-G4-6314-01 20 42969922 42969922 C T R3HDML Silent p.Y116Y 0.35 TCGA-G4-6314-01 20 43726827 43726827 C T KCNS1 Missense_Mutation p.A196T 0.23 tolerated(0.61) benign(0.007) TCGA-G4-6314-01 20 44806795 44806795 G A CDH22 Missense_Mutation p.R569W 0.46 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 20 45905153 45905153 G A ZMYND8 Missense_Mutation p.T462M 0.12 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-G4-6314-01 20 47865299 47865299 C T ZNFX1 Missense_Mutation p.G1421D 0.14 tolerated(0.82) benign(0) TCGA-G4-6314-01 20 52602035 52602035 C A BCAS1 Missense_Mutation p.A311S 0.30 tolerated(0.15) benign(0.156) TCGA-G4-6314-01 20 62038061 62038061 G A KCNQ2 Missense_Mutation p.P852L 0.35 tolerated(1) probably_damaging(0.951) TCGA-G4-6314-01 22 30394768 30394768 G T MTMR3 Missense_Mutation p.R160M 0.09 deleterious(0.03) probably_damaging(0.971) TCGA-G4-6314-01 22 37098532 37098532 G A CACNG2 Silent p.T30T 0.36 TCGA-G4-6314-01 22 44276749 44276749 C T PNPLA5 Missense_Mutation p.V406I 0.28 tolerated(0.3) benign(0.025) TCGA-G4-6314-01 22 50470482 50470482 C A TTLL8 Missense_Mutation p.R463L 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 2 10101245 10101245 A G GRHL1 Missense_Mutation p.N117D 0.43 tolerated(0.22) benign(0.101) TCGA-G4-6314-01 2 109347808 109347808 G C RANBP2 Missense_Mutation p.D95H 0.19 deleterious(0) benign(0.196) TCGA-G4-6314-01 2 15307122 15307122 A G NBAS 3'UTR 0.09 TCGA-G4-6314-01 2 173861226 173861226 T A RAPGEF4 Missense_Mutation p.I508N 0.18 deleterious(0) possibly_damaging(0.766) TCGA-G4-6314-01 2 179469465 179469465 G T TTN Silent p.V18117V 0.28 TCGA-G4-6314-01 2 202285243 202285243 C G TRAK2 5'UTR 0.22 TCGA-G4-6314-01 2 210783378 210783378 A G UNC80 Silent p.E1712E 0.20 TCGA-G4-6314-01 2 218750500 218750500 G A TNS1 Silent p.I236I 0.38 TCGA-G4-6314-01 2 237395533 237395533 C T IQCA1 Missense_Mutation p.R220H 0.49 deleterious(0) benign(0.298) TCGA-G4-6314-01 2 27373089 27373089 G A TCF23 Silent p.P107P 0.31 TCGA-G4-6314-01 2 39107756 39107756 G A MORN2 5'UTR 0.24 TCGA-G4-6314-01 2 54895522 54895522 C T SPTBN1 Missense_Mutation p.S2304F 0.18 deleterious(0.01) possibly_damaging(0.516) TCGA-G4-6314-01 2 74320073 74320073 C T TET3 Silent p.V893V 0.07 TCGA-G4-6314-01 3 119534196 119534196 C T NR1I2 Missense_Mutation p.P361S 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6314-01 3 137881304 137881304 C A DBR1 Missense_Mutation p.Q354H 0.17 tolerated(0.09) benign(0.009) TCGA-G4-6314-01 3 138738876 138738876 A G PRR23B Missense_Mutation p.S210P 0.06 tolerated(0.07) probably_damaging(0.995) TCGA-G4-6314-01 3 14725794 14725794 G T C3orf20 Missense_Mutation p.S177I 0.05 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 3 47058654 47058654 C G SETD2 Missense_Mutation p.E2542Q 0.15 deleterious(0) probably_damaging(0.997) TCGA-G4-6314-01 3 47460002 47460002 G A SCAP Silent p.L714L 0.32 TCGA-G4-6314-01 3 49137237 49137237 C T QARS Missense_Mutation p.E449K 0.39 deleterious(0) probably_damaging(0.999) TCGA-G4-6314-01 3 69169035 69169035 G A LMOD3 Silent p.D157D 0.16 TCGA-G4-6314-01 3 7188210 7188210 C T GRM7 Silent p.R197R 0.35 TCGA-G4-6314-01 3 73432945 73432945 C T PDZRN3 Silent p.K924K 0.20 TCGA-G4-6314-01 4 144141509 144141509 G A USP38 Missense_Mutation p.R1010Q 0.12 tolerated(0.12) probably_damaging(0.999) TCGA-G4-6314-01 4 189068144 189068144 A G TRIML1 Missense_Mutation p.Y342C 0.20 deleterious(0.02) probably_damaging(1) TCGA-G4-6314-01 4 70810661 70810661 G A CSN1S1 Missense_Mutation p.D166N 0.38 tolerated(0.16) probably_damaging(0.913) TCGA-G4-6314-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.18 TCGA-G4-6314-01 5 112175760 112175761 - T APC Frame_Shift_Ins p.A1492Cfs*22 0.26 TCGA-G4-6314-01 5 127714578 127714578 C T FBN2 Missense_Mutation p.D537N 0.24 tolerated(0.14) possibly_damaging(0.609) TCGA-G4-6314-01 5 135290597 135290597 G T LECT2 5'UTR 0.21 TCGA-G4-6314-01 5 140754541 140754541 G A PCDHGA6 Silent p.L297L 0.21 TCGA-G4-6314-01 5 141244142 141244142 G A PCDH1 Missense_Mutation p.A585V 0.40 tolerated(0.11) benign(0.12) TCGA-G4-6314-01 5 150726956 150726956 C T SLC36A2 Silent p.S22S 0.35 TCGA-G4-6314-01 5 177019285 177019285 A G TMED9 Missense_Mutation p.T24A 0.10 tolerated(0.89) benign(0) TCGA-G4-6314-01 5 65016596 65016596 A G SGTB Silent p.R13R 0.12 TCGA-G4-6314-01 5 71593463 71593463 G A MRPS27 Missense_Mutation p.S73L 0.16 deleterious(0.01) possibly_damaging(0.524) TCGA-G4-6314-01 5 93731900 93731900 G A KIAA0825 Nonsense_Mutation p.Q1068* 0.20 TCGA-G4-6314-01 6 10671666 10671666 C T C6orf52 3'UTR 0.25 TCGA-G4-6314-01 6 117710930 117710930 G C ROS1 Missense_Mutation p.R448G 0.23 tolerated(0.12) benign(0.124) TCGA-G4-6314-01 6 118786648 118786648 G A CEP85L Nonsense_Mutation p.R783* 0.12 TCGA-G4-6314-01 6 133827275 133827275 G A EYA4 Missense_Mutation p.R408H 0.21 deleterious(0.01) benign(0.044) TCGA-G4-6314-01 6 146480576 146480576 G A GRM1 Missense_Mutation p.A265T 0.13 deleterious(0) probably_damaging(0.959) TCGA-G4-6314-01 6 15513237 15513237 C G JARID2 Missense_Mutation p.P1076R 0.15 tolerated(0.38) benign(0.111) TCGA-G4-6314-01 6 160221760 160221760 G A PNLDC1 5'UTR 0.22 TCGA-G4-6314-01 6 161160209 161160209 C T PLG Nonsense_Mutation p.R663* 0.24 TCGA-G4-6314-01 6 29080232 29080232 C T OR2J3 Nonsense_Mutation p.R189* 0.33 TCGA-G4-6314-01 6 44900428 44900428 G A SUPT3H Missense_Mutation p.R303C 0.42 deleterious(0) probably_damaging(0.988) TCGA-G4-6314-01 6 49456125 49456125 A C CENPQ Missense_Mutation p.K180Q 0.44 tolerated(0.86) benign(0.168) TCGA-G4-6314-01 6 49518615 49518615 G T C6orf141 Missense_Mutation p.G37V 0.29 deleterious(0.01) possibly_damaging(0.696) TCGA-G4-6314-01 6 7290016 7290016 G A SSR1 3'UTR 0.32 TCGA-G4-6314-01 6 74073442 74073442 G A KHDC3L Silent p.P171P 0.10 TCGA-G4-6314-01 6 80750341 80750341 G C TTK Missense_Mutation p.G804A 0.43 tolerated(0.58) benign(0.045) TCGA-G4-6314-01 6 88138363 88138363 C A C6ORF165 Missense_Mutation p.S327Y 0.08 deleterious(0) benign(0.292) TCGA-G4-6314-01 7 143096915 143096915 C T EPHA1 Missense_Mutation p.A222T 0.23 tolerated(0.1) benign(0.002) TCGA-G4-6314-01 7 151372719 151372719 G A PRKAG2 Silent p.S157S 0.16 TCGA-G4-6314-01 7 24789324 24789324 T C DFNA5 Missense_Mutation p.N24D 0.19 tolerated(0.2) possibly_damaging(0.601) TCGA-G4-6314-01 7 43351508 43351508 C T HECW1 Silent p.H58H 0.32 TCGA-G4-6314-01 7 56550129 56550129 A T RP11-760D2.1 RNA 0.25 TCGA-G4-6314-01 7 81332001 81332001 G A HGF Missense_Mutation p.R695C 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6314-01 7 87175277 87175277 C T ABCB1 Missense_Mutation p.V597I 0.13 tolerated(0.21) benign(0.002) TCGA-G4-6314-01 7 89866075 89866075 A G STEAP2 3'UTR 0.20 TCGA-G4-6314-01 8 116426596 116426596 C T TRPS1 Silent p.A1180A 0.15 TCGA-G4-6314-01 8 145278056 145278056 G A MROH1 Missense_Mutation p.G421S 0.12 deleterious(0.01) benign(0.305) TCGA-G4-6314-01 8 145727066 145727066 T C PPP1R16A Missense_Mutation p.L456P 0.12 deleterious(0) probably_damaging(0.999) TCGA-G4-6314-01 8 22020974 22020974 C G SFTPC Missense_Mutation p.P117R 0.32 tolerated(0.77) probably_damaging(0.985) TCGA-G4-6314-01 8 91638066 91638066 A G TMEM64 Missense_Mutation p.F326L 0.19 tolerated(0.12) benign(0.056) TCGA-G4-6314-01 8 99028791 99028791 G A MATN2 Missense_Mutation p.D533N 0.15 tolerated(0.63) benign(0.003) TCGA-G4-6314-01 9 107298483 107298483 G C OR13C3 Missense_Mutation p.I204M 0.12 deleterious(0) possibly_damaging(0.857) TCGA-G4-6314-01 9 131117379 131117379 C T SLC27A4 Missense_Mutation p.R458C 0.21 deleterious(0) probably_damaging(0.977) TCGA-G4-6314-01 9 135150641 135150641 A - SETX Splice_Site p.X2367_splice 0.30 TCGA-G4-6314-01 9 98278797 98278797 C T RP11-435O5.4 3'Flank 0.19 TCGA-G4-6314-01 X 101395923 101395923 C A TCEAL6 Missense_Mutation p.E127D 0.50 tolerated(0.1) benign(0.159) TCGA-G4-6314-01 X 101822842 101822842 C T NXF4 RNA 0.38 TCGA-G4-6314-01 X 12734821 12734821 C T FRMPD4 Missense_Mutation p.A748V 0.35 tolerated_low_confidence(0.14) benign(0.021) TCGA-G4-6314-01 X 142967979 142967979 G T UBE2NL 3'UTR 0.50 TCGA-G4-6314-01 X 151514068 151514068 G A GABRA3 Nonsense_Mutation p.R83* 0.42 TCGA-G4-6314-01 X 153048497 153048497 C T SRPK3 Silent p.D224D 0.28 TCGA-G4-6314-01 X 153590143 153590143 C T FLNA Missense_Mutation p.V947I 0.56 tolerated(0.49) benign(0.091) TCGA-G4-6314-01 X 153688671 153688671 G T PLXNA3 Missense_Mutation p.V50L 0.50 deleterious(0) benign(0.435) TCGA-G4-6314-01 X 153688672 153688672 T G PLXNA3 Missense_Mutation p.V50G 0.50 deleterious(0) possibly_damaging(0.899) TCGA-G4-6314-01 X 19026229 19026229 T C GPR64 Missense_Mutation p.T479A 0.50 tolerated(0.27) benign(0.008) TCGA-G4-6314-01 X 27839954 27839954 C T MAGEB10 Silent p.I177I 0.50 TCGA-G4-6314-01 X 2823142 2823142 A G ARSD 3'UTR 0.19 TCGA-G4-6314-01 X 54492178 54492178 G A FGD1 Missense_Mutation p.T483I 0.47 deleterious(0.02) benign(0.137) TCGA-G4-6315-01 10 104230499 104230499 C T TMEM180 Missense_Mutation p.A110V 0.32 deleterious(0) possibly_damaging(0.606) TCGA-G4-6315-01 10 17110680 17110680 A - CUBN Frame_Shift_Del p.L906Ffs*6 0.22 TCGA-G4-6315-01 10 99359884 99359884 G T HOGA1 Nonsense_Mutation p.G222* 0.19 TCGA-G4-6315-01 11 10051405 10051405 G T SBF2 Silent p.I140I 0.25 TCGA-G4-6315-01 11 110462722 110462722 G T ARHGAP20 Missense_Mutation p.D374E 0.27 tolerated(0.1) benign(0.317) TCGA-G4-6315-01 11 111407677 111407677 C T C11orf88 3'UTR 0.17 TCGA-G4-6315-01 11 133791120 133791120 C T IGSF9B Missense_Mutation p.V834M 0.31 deleterious(0) possibly_damaging(0.454) TCGA-G4-6315-01 11 1771657 1771657 G A IFITM10 Missense_Mutation p.R6W 0.15 deleterious_low_confidence(0) benign(0.025) TCGA-G4-6315-01 11 5444109 5444109 A G OR51Q1 Missense_Mutation p.I227V 0.18 tolerated(1) benign(0.019) TCGA-G4-6315-01 11 60160181 60160181 C A MS4A7 Silent p.I190I 0.15 TCGA-G4-6315-01 11 605170 605170 C A PHRF1 Missense_Mutation p.P402T 0.17 deleterious(0) probably_damaging(0.997) TCGA-G4-6315-01 11 64794980 64794980 C T SNX15 5'UTR 0.20 TCGA-G4-6315-01 11 66083825 66083825 C T CD248 Missense_Mutation p.R225Q 0.22 tolerated(0.57) benign(0.002) TCGA-G4-6315-01 12 101674904 101674904 T G UTP20 Missense_Mutation p.F19C 0.16 deleterious(0) probably_damaging(0.999) TCGA-G4-6315-01 12 51236819 51236819 G A TMPRSS12 Silent p.S24S 0.12 TCGA-G4-6315-01 12 56031463 56031463 C T OR10P1 Missense_Mutation p.P263L 0.34 deleterious(0.04) possibly_damaging(0.554) TCGA-G4-6315-01 12 66345296 66345296 T C HMGA2 Intron 0.24 TCGA-G4-6315-01 12 74933083 74933083 T A ATXN7L3B 3'UTR 0.17 TCGA-G4-6315-01 13 110960255 110960255 G A COL4A2 Missense_Mutation p.G2E 0.12 benign(0.202) TCGA-G4-6315-01 13 113803640 113803640 C T F10 Missense_Mutation p.R426C 0.26 deleterious(0) possibly_damaging(0.898) TCGA-G4-6315-01 13 50205559 50205559 A G ARL11 3'UTR 0.15 TCGA-G4-6315-01 14 60752598 60752598 C T PPM1A Intron 0.19 TCGA-G4-6315-01 15 24921873 24921873 C T NPAP1 Missense_Mutation p.P287S 0.23 tolerated(0.21) benign(0.208) TCGA-G4-6315-01 15 31776586 31776588 CTT - OTUD7A In_Frame_Del p.K564del 0.09 TCGA-G4-6315-01 15 34040691 34040691 C T RYR3 Missense_Mutation p.P2720L 0.47 probably_damaging(0.945) TCGA-G4-6315-01 15 42652284 42652284 C A CAPN3 Missense_Mutation p.P94H 0.10 deleterious(0.01) possibly_damaging(0.775) TCGA-G4-6315-01 15 48707933 48707933 G A FBN1 Silent p.C2617C 0.12 TCGA-G4-6315-01 15 54626001 54626001 G A UNC13C Missense_Mutation p.D1511N 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6315-01 15 59387206 59387206 T G RNF111 3'UTR 0.18 TCGA-G4-6315-01 15 74327568 74327568 C T PML Intron 0.26 TCGA-G4-6315-01 16 23695251 23695251 C T PLK1 Missense_Mutation p.R293C 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6315-01 16 29874233 29874233 A T CDIPT 5'UTR 0.24 TCGA-G4-6315-01 16 4626407 4626407 C T C16orf96 Silent p.S642S 0.33 TCGA-G4-6315-01 16 57416904 57416904 G A CX3CL1 Missense_Mutation p.R385Q 0.34 deleterious(0.02) possibly_damaging(0.889) TCGA-G4-6315-01 16 58314146 58314146 G A PRSS54 Silent p.F390F 0.28 TCGA-G4-6315-01 16 75512862 75512862 C T CHST6 Missense_Mutation p.A289T 0.19 tolerated(0.24) benign(0.017) TCGA-G4-6315-01 16 78142372 78142372 C T WWOX Nonsense_Mutation p.R54* 0.25 TCGA-G4-6315-01 16 8858658 8858658 G A ABAT Missense_Mutation p.A171T 0.27 deleterious(0) probably_damaging(0.997) TCGA-G4-6315-01 16 90038562 90038562 T C CENPBD1 5'UTR 0.11 TCGA-G4-6315-01 17 38854463 38854463 G C KRT24 3'UTR 0.14 TCGA-G4-6315-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.39 deleterious(0) probably_damaging(1) TCGA-G4-6315-01 18 12274264 12274264 G T CIDEA Missense_Mutation p.G168V 0.44 tolerated(0.05) benign(0.017) TCGA-G4-6315-01 18 34191931 34191931 C A FHOD3 Missense_Mutation p.P277Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-G4-6315-01 18 47753861 47753861 C T CCDC11 Missense_Mutation p.A479T 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-G4-6315-01 19 1080727 1080727 G A HMHA1 Silent p.S669S 0.22 TCGA-G4-6315-01 19 11332622 11332622 T C DOCK6 Missense_Mutation p.Y1152C 0.11 tolerated(0.31) probably_damaging(0.928) TCGA-G4-6315-01 19 13265433 13265433 G A IER2 3'UTR 0.20 TCGA-G4-6315-01 19 16643945 16643945 C T CHERP Silent p.A133A 0.13 TCGA-G4-6315-01 19 16918475 16918475 C T NWD1 Missense_Mutation p.T1272M 0.36 deleterious(0.03) probably_damaging(0.921) TCGA-G4-6315-01 19 18271374 18271374 G A PIK3R2 Splice_Site p.X139_splice 0.28 TCGA-G4-6315-01 19 18870879 18870879 G - CRTC1 Frame_Shift_Del p.S261Pfs*5 0.18 TCGA-G4-6315-01 19 2078316 2078316 C T MOB3A Missense_Mutation p.G82S 0.26 deleterious(0.04) benign(0.014) TCGA-G4-6315-01 19 4358022 4358022 C T MPND Intron 0.16 TCGA-G4-6315-01 19 43708209 43708209 G C PSG4 Missense_Mutation p.Q87E 0.13 tolerated(0.61) benign(0.01) TCGA-G4-6315-01 19 46307845 46307845 G A RSPH6A Missense_Mutation p.R440W 0.17 deleterious(0) probably_damaging(0.999) TCGA-G4-6315-01 19 49469886 49469887 - TATCA FTL Frame_Shift_Ins p.K143Ifs*9 0.31 TCGA-G4-6315-01 19 55494668 55494668 C T NLRP2 Silent p.D534D 0.33 TCGA-G4-6315-01 19 58118231 58118231 A G ZNF530 Silent p.Q446Q 0.29 TCGA-G4-6315-01 19 58370366 58370366 G C ZNF587 Missense_Mutation p.D196H 0.11 tolerated(0.23) benign(0.099) TCGA-G4-6315-01 19 9643591 9643591 G T ZNF426 Silent p.I85I 0.26 TCGA-G4-6315-01 1 103354184 103354184 T C COL11A1 Silent p.G1519G 0.32 TCGA-G4-6315-01 1 109171419 109171419 T C FAM102B Silent p.S321S 0.28 TCGA-G4-6315-01 1 109517337 109517337 C T WDR47 Missense_Mutation p.R821H 0.33 deleterious(0.02) probably_damaging(1) TCGA-G4-6315-01 1 115258747 115258747 C T NRAS Missense_Mutation p.G12D 0.39 deleterious(0) possibly_damaging(0.726) TCGA-G4-6315-01 1 145415297 145415297 T C HFE2 Missense_Mutation p.I39T 0.39 deleterious(0) probably_damaging(0.999) TCGA-G4-6315-01 1 152384648 152384648 G A CRNN Missense_Mutation p.T21M 0.31 tolerated(0.12) benign(0.148) TCGA-G4-6315-01 1 159175676 159175676 C T DARC Silent p.C151C 0.18 TCGA-G4-6315-01 1 159778016 159778016 C A FCRL6 Missense_Mutation p.A34D 0.17 deleterious(0.02) possibly_damaging(0.678) TCGA-G4-6315-01 1 193045078 193045078 C T TROVE2 Missense_Mutation p.R237C 0.36 deleterious(0.02) possibly_damaging(0.668) TCGA-G4-6315-01 1 196757355 196757355 C G CFHR3 Nonsense_Mutation p.S147* 0.21 TCGA-G4-6315-01 1 197019871 197019871 G C F13B Missense_Mutation p.A565G 0.15 deleterious(0.01) benign(0.41) TCGA-G4-6315-01 1 198701655 198701655 G A PTPRC Silent p.G704G 0.06 TCGA-G4-6315-01 1 215901624 215901624 G A USH2A Silent p.Y3938Y 0.28 TCGA-G4-6315-01 1 228461953 228461953 G A OBSCN Missense_Mutation p.E2206K 0.13 probably_damaging(0.998) TCGA-G4-6315-01 1 231386740 231386740 A G GNPAT Missense_Mutation p.I38V 0.32 tolerated(0.07) benign(0.005) TCGA-G4-6315-01 1 236766351 236766351 C G HEATR1 Intron 0.23 TCGA-G4-6315-01 1 237794808 237794808 C A RYR2 Silent p.V2174V 0.41 TCGA-G4-6315-01 1 241033417 241033417 C T RGS7 Missense_Mutation p.V130I 0.32 tolerated(0.73) probably_damaging(0.968) TCGA-G4-6315-01 1 248004946 248004946 G A OR11L1 Silent p.L85L 0.10 TCGA-G4-6315-01 1 42049007 42049007 G A HIVEP3 Missense_Mutation p.R488W 0.12 probably_damaging(0.999) TCGA-G4-6315-01 1 77528749 77528749 G A ST6GALNAC5 Missense_Mutation p.R290H 0.19 probably_damaging(0.975) TCGA-G4-6315-01 1 86818615 86818615 T A ODF2L Missense_Mutation p.K607I 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6315-01 20 21687475 21687475 C T PAX1 Missense_Mutation p.A229V 0.08 deleterious(0.03) benign(0.028) TCGA-G4-6315-01 20 34817413 34817413 T A EPB41L1 3'UTR 0.11 TCGA-G4-6315-01 20 3684577 3684577 G T SIGLEC1 Missense_Mutation p.L290M 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6315-01 20 39802854 39802854 C T PLCG1 Missense_Mutation p.R1246W 0.17 tolerated(0.06) benign(0.016) TCGA-G4-6315-01 20 44441485 44441485 G A UBE2C Intron 0.09 TCGA-G4-6315-01 20 55027412 55027412 G C CASS4 Missense_Mutation p.E394Q 0.20 deleterious(0.03) possibly_damaging(0.864) TCGA-G4-6315-01 20 62121966 62121966 G C EEF1A2 Missense_Mutation p.L299V 0.07 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-G4-6315-01 21 11098795 11098795 G A BAGE2 RNA 0.25 TCGA-G4-6315-01 21 15535768 15535769 - A LIPI Frame_Shift_Ins p.L347Ffs*23 0.28 TCGA-G4-6315-01 21 31709493 31709493 G C KRTAP27-1 Missense_Mutation p.S165C 0.16 tolerated(0.07) benign(0.025) TCGA-G4-6315-01 21 39671821 39671821 C G KCNJ15 Missense_Mutation p.S213C 0.24 tolerated(0.09) possibly_damaging(0.815) TCGA-G4-6315-01 22 36907814 36907814 C T EIF3D Missense_Mutation p.V457M 0.15 tolerated(0.2) benign(0.108) TCGA-G4-6315-01 22 37334281 37334281 G A CSF2RB Missense_Mutation p.E811K 0.17 tolerated(0.09) benign(0.237) TCGA-G4-6315-01 22 37888750 37888750 G A CARD10 Missense_Mutation p.R846W 0.42 deleterious(0) probably_damaging(0.964) TCGA-G4-6315-01 2 100722474 100722474 C T AFF3 5'Flank 0.26 TCGA-G4-6315-01 2 159535158 159535158 C T PKP4 Missense_Mutation p.R1108W 0.25 deleterious(0.01) benign(0.284) TCGA-G4-6315-01 2 165986591 165986591 G A SCN3A Silent p.N927N 0.30 TCGA-G4-6315-01 2 166179835 166179835 C T SCN2A Missense_Mutation p.P614L 0.21 deleterious(0.03) probably_damaging(0.949) TCGA-G4-6315-01 2 177016482 177016482 G A HOXD4 Missense_Mutation p.A41T 0.43 tolerated(0.39) benign(0.003) TCGA-G4-6315-01 2 18112522 18112522 T G KCNS3 Missense_Mutation p.Y83D 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6315-01 2 190428383 190428383 C T SLC40A1 Silent p.P443P 0.26 TCGA-G4-6315-01 2 198281535 198281535 C T SF3B1 Missense_Mutation p.R199H 0.32 deleterious(0) possibly_damaging(0.906) TCGA-G4-6315-01 2 219525667 219525667 C T BCS1L 5'UTR 0.18 TCGA-G4-6315-01 2 220405190 220405190 G A CHPF Missense_Mutation p.R415C 0.29 tolerated(0.1) possibly_damaging(0.67) TCGA-G4-6315-01 2 224629995 224629995 C T AP1S3 Missense_Mutation p.E122K 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-G4-6315-01 2 237032649 237032649 C T AGAP1 Silent p.D819D 0.28 TCGA-G4-6315-01 2 241817525 241817525 C T AGXT Silent p.F343F 0.20 TCGA-G4-6315-01 2 50850731 50850731 C T NRXN1 Silent p.T318T 0.25 TCGA-G4-6315-01 2 74652025 74652025 G A WDR54 Silent p.T186T 0.30 TCGA-G4-6315-01 2 80782934 80782934 A T CTNNA2 Missense_Mutation p.I553F 0.14 deleterious(0) benign(0.142) TCGA-G4-6315-01 2 89326702 89326702 G T IGKV3-11 Missense_Mutation p.A104E 0.28 deleterious(0) probably_damaging(0.978) TCGA-G4-6315-01 3 105264175 105264175 T C ALCAM Missense_Mutation p.M367T 0.13 tolerated(0.93) benign(0.02) TCGA-G4-6315-01 3 130285931 130285931 T A COL6A6 Silent p.P556P 0.32 TCGA-G4-6315-01 3 133119001 133119001 C A BFSP2 Missense_Mutation p.A25E 0.12 deleterious(0.03) benign(0.082) TCGA-G4-6315-01 3 14724685 14724685 C T C3orf20 Silent p.A155A 0.09 TCGA-G4-6315-01 3 148904457 148904457 C T CP Missense_Mutation p.V643M 0.12 tolerated(0.1) benign(0.077) TCGA-G4-6315-01 3 155546084 155546084 A C SLC33A1 Missense_Mutation p.F522C 0.28 tolerated(0.08) benign(0.03) TCGA-G4-6315-01 3 164907524 164907524 G T SLITRK3 Silent p.T365T 0.28 TCGA-G4-6315-01 3 180364871 180364871 A C CCDC39 Missense_Mutation p.L508R 0.13 deleterious(0) probably_damaging(0.99) TCGA-G4-6315-01 3 180378440 180378440 G A CCDC39 Missense_Mutation p.A145V 0.15 deleterious(0.04) possibly_damaging(0.747) TCGA-G4-6315-01 3 194408251 194408251 C T FAM43A Silent p.H232H 0.24 TCGA-G4-6315-01 3 197799626 197799626 C T RNU6-821P 5'Flank 0.21 TCGA-G4-6315-01 3 47614289 47614289 G A CSPG5 Silent p.C423C 0.29 TCGA-G4-6315-01 3 48415111 48415111 T C FBXW12 Missense_Mutation p.F68L 0.27 tolerated(0.21) benign(0.013) TCGA-G4-6315-01 3 55508454 55508454 C T WNT5A Missense_Mutation p.A199T 0.30 deleterious(0.04) probably_damaging(0.939) TCGA-G4-6315-01 3 57232304 57232304 C T HESX1 Missense_Mutation p.R160H 0.29 deleterious(0.01) probably_damaging(0.919) TCGA-G4-6315-01 3 57438668 57438668 G A DNAH12 Missense_Mutation p.R1207C 0.33 tolerated(0.14) possibly_damaging(0.689) TCGA-G4-6315-01 3 65342577 65342577 G A MAGI1 Missense_Mutation p.P1289S 0.36 tolerated(0.63) benign(0.006) TCGA-G4-6315-01 3 65415201 65415201 G A MAGI1 Nonsense_Mutation p.R721* 0.30 TCGA-G4-6315-01 4 156273790 156273790 T - MAP9 Frame_Shift_Del p.D594Ifs*82 0.13 TCGA-G4-6315-01 4 162307403 162307403 G A FSTL5 Silent p.D680D 0.15 TCGA-G4-6315-01 4 2339215 2339215 G A ZFYVE28 Missense_Mutation p.S177L 0.36 deleterious(0) probably_damaging(0.999) TCGA-G4-6315-01 4 3117138 3117138 A G HTT Silent p.Q285Q 0.22 TCGA-G4-6315-01 4 48424156 48424156 A G SLAIN2 3'UTR 0.24 TCGA-G4-6315-01 4 74306452 74306452 C T AFP Missense_Mutation p.S135L 0.20 tolerated(0.11) possibly_damaging(0.623) TCGA-G4-6315-01 4 77662119 77662119 A G SHROOM3 Silent p.A931A 0.08 TCGA-G4-6315-01 4 91549236 91549236 C T CCSER1 Silent p.S595S 0.15 TCGA-G4-6315-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.30 TCGA-G4-6315-01 5 112175348 112175348 G T APC Nonsense_Mutation p.E1353* 0.26 TCGA-G4-6315-01 5 115152191 115152191 G T CDO1 5'UTR 0.22 TCGA-G4-6315-01 5 135602117 135602117 C T TRPC7 Missense_Mutation p.R379Q 0.32 tolerated(0.5) benign(0.003) TCGA-G4-6315-01 5 140167384 140167384 G A PCDHA1 Silent p.A503A 0.21 TCGA-G4-6315-01 5 140232685 140232685 C T PCDHA9 Intron 0.23 TCGA-G4-6315-01 5 140264210 140264210 C A PCDHA13 Missense_Mutation p.T786K 0.30 tolerated_low_confidence(0.85) benign(0.001) TCGA-G4-6315-01 5 140755778 140755778 G A PCDHGA6 Missense_Mutation p.V710M 0.15 tolerated_low_confidence(0.08) benign(0.063) TCGA-G4-6315-01 5 154173478 154173478 G C LARP1 Silent p.G252G 0.30 TCGA-G4-6315-01 5 176072504 176072504 G A EIF4E1B Missense_Mutation p.V201M 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6315-01 5 35066200 35066200 C T PRLR Missense_Mutation p.G287D 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6315-01 5 35709375 35709375 C T SPEF2 Intron 0.29 TCGA-G4-6315-01 5 35740111 35740111 G T SPEF2 Missense_Mutation p.D1052Y 0.28 deleterious(0.04) benign(0.003) TCGA-G4-6315-01 5 38502811 38502811 G A LIFR Missense_Mutation p.R510C 0.26 deleterious(0.01) probably_damaging(1) TCGA-G4-6315-01 5 88056872 88056872 C T MEF2C Missense_Mutation p.R130H 0.13 tolerated(0.24) benign(0.397) TCGA-G4-6315-01 5 89953850 89953850 G A GPR98 Missense_Mutation p.A1503T 0.22 possibly_damaging(0.821) TCGA-G4-6315-01 6 130762181 130762181 T A TMEM200A Nonsense_Mutation p.L205* 0.31 TCGA-G4-6315-01 6 152129384 152129384 C T ESR1 Missense_Mutation p.P113S 0.07 tolerated(1) benign(0.006) TCGA-G4-6315-01 6 15496644 15496644 G A JARID2 Silent p.A396A 0.18 TCGA-G4-6315-01 6 33380140 33380140 G A PHF1 Missense_Mutation p.G34S 0.30 deleterious(0) probably_damaging(0.993) TCGA-G4-6315-01 6 37615057 37615057 G T MDGA1 Silent p.P646P 0.20 TCGA-G4-6315-01 6 397219 397219 G A IRF4 Missense_Mutation p.G202S 0.23 tolerated(1) benign(0.001) TCGA-G4-6315-01 6 532566 532566 T C EXOC2 Silent p.E761E 0.12 TCGA-G4-6315-01 6 56515773 56515773 T C DST Missense_Mutation p.Y251C 0.15 probably_damaging(1) TCGA-G4-6315-01 6 84350844 84350844 G A SNAP91 Nonsense_Mutation p.R246* 0.31 TCGA-G4-6315-01 7 108112988 108112988 T C PNPLA8 Missense_Mutation p.K736E 0.07 tolerated(0.18) benign(0.004) TCGA-G4-6315-01 7 121753742 121753742 G A AASS Missense_Mutation p.T359I 0.08 tolerated(0.28) possibly_damaging(0.493) TCGA-G4-6315-01 7 122774522 122774522 C A SLC13A1 Missense_Mutation p.A292S 0.15 tolerated(0.7) benign(0.277) TCGA-G4-6315-01 7 23391102 23391102 G A IGF2BP3 Nonsense_Mutation p.R169* 0.21 TCGA-G4-6315-01 7 28997439 28997439 G A AC005013.5 RNA 0.11 TCGA-G4-6315-01 7 35293184 35293184 G A TBX20 Silent p.N16N 0.19 TCGA-G4-6315-01 7 43484716 43484716 G A HECW1 Missense_Mutation p.D649N 0.59 deleterious_low_confidence(0.02) benign(0.002) TCGA-G4-6315-01 7 43594242 43594242 G A HECW1 Missense_Mutation p.R1521H 0.25 deleterious(0.04) benign(0.082) TCGA-G4-6315-01 7 45015183 45015183 C T MYO1G Missense_Mutation p.R155H 0.22 deleterious(0) probably_damaging(0.999) TCGA-G4-6315-01 7 82390804 82390804 T A PCLO Missense_Mutation p.T5005S 0.14 unknown(0) TCGA-G4-6315-01 7 82546104 82546104 G T PCLO Missense_Mutation p.S3733Y 0.26 unknown(0) TCGA-G4-6315-01 8 13072282 13072282 C A DLC1 Intron 0.08 TCGA-G4-6315-01 8 134062163 134062163 C A SLA Missense_Mutation p.A118S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6315-01 8 145621891 145621891 G A CPSF1 Silent p.G916G 0.40 TCGA-G4-6315-01 8 2876142 2876142 G T CSMD1 Missense_Mutation p.P2629Q 0.16 probably_damaging(0.999) TCGA-G4-6315-01 8 43197359 43197359 C A POTEA RNA 0.39 TCGA-G4-6315-01 8 48686826 48686826 A - PRKDC Frame_Shift_Del p.S4098Qfs*6 0.19 TCGA-G4-6315-01 8 55370898 55370898 G A SOX17 Missense_Mutation p.R67H 0.25 deleterious(0) possibly_damaging(0.662) TCGA-G4-6315-01 9 100678574 100678574 C T C9orf156 Silent p.S41S 0.37 TCGA-G4-6315-01 9 119461944 119461944 G C TRIM32 Missense_Mutation p.K641N 0.28 deleterious(0) probably_damaging(0.998) TCGA-G4-6315-01 9 134004681 134004681 C T NUP214 Missense_Mutation p.R137C 0.25 unknown(0) TCGA-G4-6315-01 9 136301996 136301996 G A ADAMTS13 Silent p.R452R 0.33 TCGA-G4-6315-01 9 137620569 137620569 C T COL5A1 Silent p.Y280Y 0.30 TCGA-G4-6315-01 9 141006876 141006876 G A CACNA1B Missense_Mutation p.A1819T 0.18 deleterious(0.03) possibly_damaging(0.781) TCGA-G4-6315-01 9 27202967 27202967 G T TEK Missense_Mutation p.V687L 0.24 tolerated(0.31) benign(0.074) TCGA-G4-6315-01 9 35682837 35682837 G T TPM2 Intron 0.32 TCGA-G4-6315-01 9 87325634 87325634 A C NTRK2 Missense_Mutation p.T171P 0.11 tolerated(0.08) benign(0.394) TCGA-G4-6315-01 9 89763597 89763597 A T C9orf170 5'UTR 0.17 TCGA-G4-6315-01 X 101911285 101911285 T A GPRASP1 Missense_Mutation p.F815Y 0.34 tolerated(0.24) probably_damaging(0.994) TCGA-G4-6315-01 X 114358547 114358547 C A LRCH2 Missense_Mutation p.G604C 0.60 tolerated(0.06) possibly_damaging(0.503) TCGA-G4-6315-01 X 129273834 129273834 C A AIFM1 Missense_Mutation p.R265I 0.28 deleterious(0) probably_damaging(0.972) TCGA-G4-6315-01 X 3021821 3021821 G C ARSF Missense_Mutation p.G374A 0.14 deleterious(0.03) probably_damaging(0.975) TCGA-G4-6315-01 X 36116946 36116947 - G CHDC2 Frame_Shift_Ins p.F227Vfs*4 0.23 TCGA-G4-6315-01 X 36379569 36379569 G T CXorf30 Missense_Mutation p.R438S 0.52 tolerated(0.79) benign(0.003) TCGA-G4-6315-01 X 47072409 47072409 G A UBA1 Silent p.K889K 0.23 TCGA-G4-6315-01 X 53172109 53172109 A G LINC01155 RNA 0.15 TCGA-G4-6315-01 X 57475049 57475049 G T FAAH2 Missense_Mutation p.D441Y 0.58 deleterious(0) possibly_damaging(0.704) TCGA-G4-6315-01 X 79700691 79700691 C G FAM46D 3'UTR 0.54 TCGA-G4-6315-01 X 80064520 80064520 C T BRWD3 Missense_Mutation p.E38K 0.64 tolerated(0.08) benign(0.065) TCGA-G4-6317-01 10 108459113 108459113 G A SORCS1 Silent p.F424F 0.23 TCGA-G4-6317-01 10 114912188 114912188 C T TCF7L2 Missense_Mutation p.R420W 0.19 deleterious(0) probably_damaging(0.999) TCGA-G4-6317-01 10 43622073 43622073 C T RET Silent p.D1030D 0.41 TCGA-G4-6317-01 10 5772838 5772838 C T FAM208B Silent p.D292D 0.13 TCGA-G4-6317-01 10 6155546 6155546 T C RBM17 Splice_Site p.X310_splice 0.34 TCGA-G4-6317-01 10 70645447 70645447 G A STOX1 Missense_Mutation p.G632E 0.38 tolerated(1) benign(0.006) TCGA-G4-6317-01 10 99081660 99081660 C T FRAT1 3'UTR 0.29 TCGA-G4-6317-01 11 107502335 107502335 C T ELMOD1 Silent p.P74P 0.45 TCGA-G4-6317-01 11 129793189 129793189 G A PRDM10 Missense_Mutation p.S667L 0.23 deleterious(0) benign(0.324) TCGA-G4-6317-01 11 14536026 14536026 C A PSMA1 Missense_Mutation p.R95L 0.40 deleterious(0) possibly_damaging(0.882) TCGA-G4-6317-01 11 3723960 3723960 C T NUP98 Missense_Mutation p.S1082N 0.56 tolerated(0.25) benign(0.444) TCGA-G4-6317-01 11 55418397 55418397 C T OR4S2 Silent p.N6N 0.30 TCGA-G4-6317-01 11 61632679 61632680 TC - FADS2 Frame_Shift_Del p.L406Mfs*7 0.15 TCGA-G4-6317-01 11 64109548 64109548 C T CCDC88B Missense_Mutation p.S253L 0.24 tolerated(0.11) possibly_damaging(0.623) TCGA-G4-6317-01 11 65685198 65685198 C T C11orf68 Missense_Mutation p.R205H 0.47 tolerated(0.54) benign(0.007) TCGA-G4-6317-01 11 6912967 6912967 T A OR2D2 Silent p.A255A 0.25 TCGA-G4-6317-01 11 75280007 75280007 G A SERPINH1 Missense_Mutation p.E249K 0.26 tolerated(0.77) benign(0.05) TCGA-G4-6317-01 11 92600069 92600069 C T FAT3 Missense_Mutation p.R3941C 0.19 probably_damaging(0.993) TCGA-G4-6317-01 12 110825595 110825595 G A ANAPC7 Missense_Mutation p.A242V 0.53 deleterious(0.01) benign(0.108) TCGA-G4-6317-01 12 124114967 124114969 TGA - EIF2B1 In_Frame_Del p.I76del 0.51 TCGA-G4-6317-01 12 56526100 56526100 G A ESYT1 Missense_Mutation p.R323H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6317-01 12 57850142 57850142 G C INHBE Silent p.L188L 0.13 TCGA-G4-6317-01 12 7249176 7249176 C T C1RL Silent p.E425E 0.51 TCGA-G4-6317-01 13 114776714 114776714 G A RASA3 Missense_Mutation p.T508M 0.32 deleterious(0) probably_damaging(0.924) TCGA-G4-6317-01 13 20012235 20012235 G A TPTE2 Silent p.A344A 0.47 TCGA-G4-6317-01 13 35733881 35733881 C T NBEA Silent p.T1191T 0.42 TCGA-G4-6317-01 14 100934417 100934417 A C WDR25 Silent p.A294A 0.44 TCGA-G4-6317-01 14 105965293 105965293 G A C14orf80 3'UTR 0.08 TCGA-G4-6317-01 14 20920163 20920163 G A OSGEP Silent p.T127T 0.46 TCGA-G4-6317-01 14 53237750 53237750 G A STYX Splice_Site p.X200_splice 0.38 TCGA-G4-6317-01 14 88729846 88729846 G A KCNK10 Silent p.N34N 0.10 TCGA-G4-6317-01 14 96010466 96010466 C T GLRX5 3'UTR 0.26 TCGA-G4-6317-01 15 54527276 54527276 A G UNC13C Silent p.R1040R 0.12 TCGA-G4-6317-01 15 60970873 60970873 G A RP11-219B17.2 5'Flank 0.72 TCGA-G4-6317-01 15 79748964 79748964 C T KIAA1024 Missense_Mutation p.R159W 0.82 deleterious(0.03) possibly_damaging(0.539) TCGA-G4-6317-01 16 2236772 2236772 C A CASKIN1 Silent p.R328R 0.38 TCGA-G4-6317-01 16 27079316 27079316 A C C16orf82 RNA 0.44 TCGA-G4-6317-01 16 70863553 70863553 G A HYDIN Missense_Mutation p.R4694C 0.43 benign(0) TCGA-G4-6317-01 16 81097433 81097433 C T C16orf46 Missense_Mutation p.C43Y 0.42 deleterious(0) possibly_damaging(0.827) TCGA-G4-6317-01 16 88498404 88498404 C T ZNF469 Missense_Mutation p.P1481L 0.44 probably_damaging(0.995) TCGA-G4-6317-01 17 15971320 15971320 G A NCOR1 Silent p.S1543S 0.73 TCGA-G4-6317-01 17 27381578 27381578 G A PIPOX Missense_Mutation p.V226M 0.28 deleterious(0) possibly_damaging(0.824) TCGA-G4-6317-01 17 39780770 39780770 C T KRT17 5'UTR 0.28 TCGA-G4-6317-01 17 41164267 41164267 G C IFI35 Missense_Mutation p.K31N 0.32 tolerated(0.05) benign(0.168) TCGA-G4-6317-01 17 62081356 62081356 G A C17orf72 3'Flank 0.61 TCGA-G4-6317-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.74 deleterious(0) probably_damaging(1) TCGA-G4-6317-01 17 76120803 76120803 G C TMC6 Silent p.R231R 0.44 TCGA-G4-6317-01 17 8243414 8243414 A G ODF4 Silent p.G15G 0.12 TCGA-G4-6317-01 18 12493109 12493109 C T SPIRE1 Missense_Mutation p.R384Q 0.75 deleterious(0) possibly_damaging(0.755) TCGA-G4-6317-01 18 32409185 32409185 C T DTNA Intron 0.75 TCGA-G4-6317-01 18 5960128 5960128 C T L3MBTL4 Missense_Mutation p.G557S 0.69 deleterious(0) probably_damaging(1) TCGA-G4-6317-01 19 15082551 15082551 G A SLC1A6 Missense_Mutation p.T114I 0.57 deleterious(0.01) benign(0.188) TCGA-G4-6317-01 19 15918101 15918101 C T OR10H1 Silent p.V249V 0.27 TCGA-G4-6317-01 19 16503236 16503236 T C EPS15L1 Missense_Mutation p.D661G 0.11 deleterious(0.01) probably_damaging(0.923) TCGA-G4-6317-01 19 1775188 1775188 G A ONECUT3 Missense_Mutation p.R410H 0.38 deleterious(0.02) benign(0.044) TCGA-G4-6317-01 19 1987553 1987553 C T BTBD2 Missense_Mutation p.R376H 0.62 deleterious(0) probably_damaging(1) TCGA-G4-6317-01 19 19905876 19905876 A - ZNF506 Frame_Shift_Del p.S274Hfs*32 0.08 TCGA-G4-6317-01 19 21239633 21239633 G A ZNF430 Silent p.Q173Q 0.11 TCGA-G4-6317-01 19 39009925 39009925 C T RYR1 Missense_Mutation p.R3364W 0.29 benign(0.317) TCGA-G4-6317-01 19 49385415 49385415 C G TULP2 Missense_Mutation p.G441R 0.39 deleterious(0.02) possibly_damaging(0.79) TCGA-G4-6317-01 19 50881525 50881525 G A NR1H2 Missense_Mutation p.V101M 0.08 deleterious(0) probably_damaging(0.99) TCGA-G4-6317-01 19 51470537 51470537 C A KLK6 Missense_Mutation p.D29Y 0.22 deleterious(0.03) benign(0.163) TCGA-G4-6317-01 19 54933476 54933476 G A TTYH1 Missense_Mutation p.R177Q 0.67 tolerated(0.94) probably_damaging(0.924) TCGA-G4-6317-01 1 109656310 109656310 T C KIAA1324 5'Flank 0.09 TCGA-G4-6317-01 1 11771974 11771974 G T DRAXIN Missense_Mutation p.D237Y 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6317-01 1 146726526 146726526 C T CHD1L Missense_Mutation p.T81I 0.53 deleterious(0) benign(0.423) TCGA-G4-6317-01 1 153730166 153730166 C T INTS3 Missense_Mutation p.P359L 0.34 deleterious(0) probably_damaging(0.999) TCGA-G4-6317-01 1 154917419 154917419 C T PBXIP1 3'UTR 0.60 TCGA-G4-6317-01 1 179437660 179437660 G A AXDND1 Silent p.T627T 0.07 TCGA-G4-6317-01 1 186101471 186101471 C T HMCN1 Silent p.A4414A 0.55 TCGA-G4-6317-01 1 233482228 233482228 T AA MLK4 Frame_Shift_Ins p.N282Kfs*42 0.38 TCGA-G4-6317-01 1 237947200 237947200 C T RYR2 Missense_Mutation p.T4063M 0.63 possibly_damaging(0.787) TCGA-G4-6317-01 1 242383388 242383388 C T PLD5 Missense_Mutation p.A213T 0.52 tolerated(0.39) possibly_damaging(0.787) TCGA-G4-6317-01 1 243668558 243668558 C T AKT3 Missense_Mutation p.R478Q 0.32 tolerated_low_confidence(0.11) benign(0.004) TCGA-G4-6317-01 1 248112909 248112909 C T OR2L8 Silent p.Y250Y 0.53 TCGA-G4-6317-01 1 32645972 32645972 G A TXLNA Missense_Mutation p.G9E 0.56 deleterious_low_confidence(0.03) possibly_damaging(0.642) TCGA-G4-6317-01 1 33790374 33790374 C T PHC2 3'UTR 0.17 TCGA-G4-6317-01 1 46976777 46976777 C T DMBX1 Silent p.S168S 0.29 TCGA-G4-6317-01 1 52499180 52499180 T C KTI12 Missense_Mutation p.K85R 0.49 tolerated(0.07) probably_damaging(0.998) TCGA-G4-6317-01 1 62740565 62740565 G A KANK4 Nonsense_Mutation p.R71* 0.25 TCGA-G4-6317-01 1 85331529 85331529 G A LPAR3 Missense_Mutation p.P92L 0.28 deleterious(0) possibly_damaging(0.725) TCGA-G4-6317-01 1 9101732 9101732 A G SLC2A5 Intron 0.07 TCGA-G4-6317-01 20 31958391 31958391 T C CDK5RAP1 Missense_Mutation p.T436A 0.11 deleterious(0) possibly_damaging(0.615) TCGA-G4-6317-01 20 49509296 49509296 G A ADNP Missense_Mutation p.T652M 0.12 deleterious(0) probably_damaging(0.997) TCGA-G4-6317-01 20 50092070 50092070 G C NFATC2 Missense_Mutation p.T487S 0.22 tolerated(0.11) benign(0.267) TCGA-G4-6317-01 20 57415848 57415848 G A RP4-806M20.3 5'Flank 0.49 TCGA-G4-6317-01 20 57429274 57429274 C T GNAS Silent p.V318V 0.22 TCGA-G4-6317-01 20 61340985 61340985 C T NTSR1 Silent p.R142R 0.64 TCGA-G4-6317-01 20 61492809 61492809 C T TCFL5 Missense_Mutation p.E72K 0.26 deleterious(0.02) benign(0.105) TCGA-G4-6317-01 20 62076675 62076675 G A KCNQ2 Missense_Mutation p.R144W 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6317-01 21 34923166 34923166 G T SON Silent p.T543T 0.52 TCGA-G4-6317-01 22 42781153 42781153 C T NFAM1 3'UTR 0.49 TCGA-G4-6317-01 2 102029419 102029419 G A RFX8 Missense_Mutation p.R226W 0.46 tolerated(0.19) benign(0.004) TCGA-G4-6317-01 2 120831684 120831684 C T EPB41L5 Missense_Mutation p.P113S 0.41 deleterious(0) probably_damaging(0.995) TCGA-G4-6317-01 2 1500480 1500480 C T TPO Missense_Mutation p.R777W 0.37 deleterious(0.02) possibly_damaging(0.462) TCGA-G4-6317-01 2 179447025 179447025 T A TTN Missense_Mutation p.Y22053F 0.38 TCGA-G4-6317-01 2 201798667 201798667 G A ORC2 Missense_Mutation p.H247Y 0.35 deleterious(0) probably_damaging(0.934) TCGA-G4-6317-01 2 211299169 211299169 A G LANCL1 3'UTR 0.09 TCGA-G4-6317-01 2 220072683 220072683 C T ZFAND2B Silent p.S119S 0.41 TCGA-G4-6317-01 2 31754471 31754471 T A AL133247.2 Intron 0.38 TCGA-G4-6317-01 2 86276363 86276363 C A POLR1A Missense_Mutation p.V799L 0.47 tolerated(0.09) benign(0.396) TCGA-G4-6317-01 2 96523177 96523177 C T ANKRD36C Silent p.R347R 0.18 TCGA-G4-6317-01 3 100605078 100605078 A C ABI3BP Missense_Mutation p.L191R 0.80 deleterious(0) possibly_damaging(0.766) TCGA-G4-6317-01 3 164906826 164906826 G A SLITRK3 Missense_Mutation p.T598M 0.19 deleterious(0.02) benign(0.325) TCGA-G4-6317-01 3 184971731 184971731 C T EHHADH Intron 0.95 TCGA-G4-6317-01 3 38592987 38592987 G A SCN5A Missense_Mutation p.R1626C 0.06 deleterious(0) probably_damaging(0.999) TCGA-G4-6317-01 3 48501720 48501720 G A ATRIP Missense_Mutation p.V423I 0.08 tolerated(0.11) benign(0.001) TCGA-G4-6317-01 3 48607195 48607195 T A COL7A1 Splice_Site p.X2508_splice 0.83 TCGA-G4-6317-01 4 8418185 8418185 C T ACOX3 Missense_Mutation p.D22N 0.09 tolerated(0.14) benign(0.068) TCGA-G4-6317-01 4 96761325 96761325 C T PDHA2 Silent p.R8R 0.31 TCGA-G4-6317-01 5 112174920 112174921 AT - APC Frame_Shift_Del p.M1211Vfs*5 0.34 TCGA-G4-6317-01 5 112175162 112175162 C T APC Nonsense_Mutation p.Q1291* 0.24 TCGA-G4-6317-01 5 140256665 140256665 C T PCDHA12 Silent p.S536S 0.62 TCGA-G4-6317-01 5 140481313 140481313 G A PCDHB3 Silent p.S360S 0.31 TCGA-G4-6317-01 5 140784479 140784479 C G PCDHGA9 Missense_Mutation p.L654V 0.38 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-G4-6317-01 5 14358331 14358331 C T TRIO Silent p.D697D 0.53 TCGA-G4-6317-01 5 150946538 150946538 G A FAT2 Missense_Mutation p.T652I 0.06 possibly_damaging(0.673) TCGA-G4-6317-01 5 177683899 177683899 C A COL23A1 Nonsense_Mutation p.E269* 0.43 TCGA-G4-6317-01 5 35873612 35873612 C T IL7R Missense_Mutation p.L190F 0.57 deleterious(0.04) benign(0.254) TCGA-G4-6317-01 5 40747036 40747036 C A TTC33 Nonsense_Mutation p.E29* 0.26 TCGA-G4-6317-01 5 55260001 55260001 G A IL6ST Missense_Mutation p.H211Y 0.29 tolerated(0.13) possibly_damaging(0.507) TCGA-G4-6317-01 5 71491157 71491157 G T MAP1B Nonsense_Mutation p.E659* 0.59 TCGA-G4-6317-01 6 132859948 132859948 G A TAAR9 Missense_Mutation p.E174K 0.39 tolerated(0.24) benign(0.002) TCGA-G4-6317-01 6 142703104 142703104 G A GPR126 Silent p.P362P 0.47 TCGA-G4-6317-01 6 170597528 170597528 C T DLL1 Missense_Mutation p.E157K 0.36 tolerated(0.15) benign(0.326) TCGA-G4-6317-01 6 22570125 22570125 G A HDGFL1 Silent p.P107P 0.62 TCGA-G4-6317-01 6 24547531 24547531 C T KIAA0319 Missense_Mutation p.M1027I 0.07 deleterious(0) probably_damaging(0.995) TCGA-G4-6317-01 6 32029321 32029321 C T TNXB Missense_Mutation p.D2449N 0.23 probably_damaging(0.987) TCGA-G4-6317-01 6 46656365 46656365 A G TDRD6 Missense_Mutation p.H167R 0.22 tolerated(0.43) benign(0.002) TCGA-G4-6317-01 7 74211964 74211964 G A GTF2IRD2 Silent p.N629N 0.23 TCGA-G4-6317-01 7 79082417 79082417 C T MAGI2 Missense_Mutation p.V74M 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6317-01 8 10469104 10469104 T C RP1L1 Missense_Mutation p.Q835R 0.27 benign(0.134) TCGA-G4-6317-01 8 114389036 114389036 G C CSMD3 Intron 0.05 TCGA-G4-6317-01 8 144993273 144993273 G A PLEC Silent p.I3709I 0.44 TCGA-G4-6317-01 8 99963857 99963857 C A OSR2 Nonsense_Mutation p.C289* 0.71 TCGA-G4-6317-01 9 117825248 117825248 G A TNC Silent p.H1327H 0.52 TCGA-G4-6317-01 9 133917043 133917043 G A LAMC3 Missense_Mutation p.A435T 0.36 deleterious(0.01) possibly_damaging(0.871) TCGA-G4-6317-01 9 33264334 33264334 G A BAG1 Silent p.G113G 0.07 TCGA-G4-6317-01 9 4697857 4697857 G A CDC37L1 Missense_Mutation p.R242H 0.47 deleterious(0) probably_damaging(0.965) TCGA-G4-6317-01 9 5185550 5185550 C T INSL6 Missense_Mutation p.R18Q 0.35 tolerated(0.34) possibly_damaging(0.602) TCGA-G4-6317-01 X 123657430 123657430 G A TENM1 Silent p.F939F 0.40 TCGA-G4-6317-01 X 129629178 129629178 G A RP1-274L7.1 Intron 0.25 TCGA-G4-6317-01 X 153039400 153039400 C G PLXNB3 Silent p.V1145V 0.05 TCGA-G4-6317-01 X 153284905 153284905 C T IRAK1 Missense_Mutation p.R94H 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6317-01 X 30254158 30254158 C A MAGEB3 Silent p.S39S 0.26 TCGA-G4-6317-01 X 51149941 51149941 G A CXorf67 Missense_Mutation p.E25K 0.55 tolerated(0.31) benign(0.001) TCGA-G4-6317-01 X 92928403 92928403 C T NAP1L3 5'UTR 0.29 TCGA-G4-6320-01 10 101293194 101293194 C A NKX2-3 Missense_Mutation p.S102R 0.16 tolerated(0.3) benign(0.21) TCGA-G4-6320-01 10 101464263 101464263 C A ENTPD7 Silent p.S546S 0.19 TCGA-G4-6320-01 10 101611295 101611295 C T ABCC2 Silent p.C1515C 0.27 TCGA-G4-6320-01 10 102242180 102242180 G A WNT8B Silent p.L221L 0.31 TCGA-G4-6320-01 10 103534524 103534524 C T FGF8 Missense_Mutation p.R101H 0.49 deleterious(0.02) benign(0.338) TCGA-G4-6320-01 10 103827230 103827230 C T HPS6 Nonsense_Mutation p.R667* 0.17 TCGA-G4-6320-01 10 103900690 103900690 A G PPRC1 Missense_Mutation p.R809G 0.18 deleterious_low_confidence(0) benign(0.363) TCGA-G4-6320-01 10 105232879 105232879 C T CALHM3 3'UTR 0.22 TCGA-G4-6320-01 10 105798222 105798222 C T COL17A1 Silent p.P1004P 0.12 TCGA-G4-6320-01 10 105815705 105815705 T C COL17A1 Missense_Mutation p.S508G 0.20 unknown(0) TCGA-G4-6320-01 10 106974245 106974245 G T SORCS3 Missense_Mutation p.E807D 0.30 tolerated(0.37) benign(0.002) TCGA-G4-6320-01 10 114900984 114900984 C - TCF7L2 Frame_Shift_Del p.L200Sfs*25 0.22 TCGA-G4-6320-01 10 114925334 114925334 G A TCF7L2 Missense_Mutation p.R471H 0.24 deleterious(0.05) probably_damaging(0.919) TCGA-G4-6320-01 10 118385520 118385520 C T PNLIPRP2 Missense_Mutation p.R90C 0.17 deleterious(0.01) possibly_damaging(0.887) TCGA-G4-6320-01 10 118434721 118434721 C T HSPA12A Silent p.S533S 0.36 TCGA-G4-6320-01 10 119100604 119100604 C T PDZD8 Silent p.P294P 0.22 TCGA-G4-6320-01 10 119307631 119307631 A G EMX2 Missense_Mutation p.E216G 0.38 deleterious(0.03) benign(0.154) TCGA-G4-6320-01 10 122622370 122622370 C T WDR11 Missense_Mutation p.T217I 0.20 deleterious(0.02) benign(0.017) TCGA-G4-6320-01 10 124457386 124457386 G A C10orf120 Missense_Mutation p.P291S 0.25 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 10 125516851 125516851 A G CPXM2 Missense_Mutation p.Y599H 0.23 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 10 1284360 1284360 G T ADARB2 Missense_Mutation p.L399M 0.18 tolerated(0.2) probably_damaging(0.998) TCGA-G4-6320-01 10 13322988 13322988 G A PHYH Silent p.S317S 0.19 TCGA-G4-6320-01 10 134699453 134699453 G A TTC40 Silent p.D1105D 0.26 TCGA-G4-6320-01 10 135020804 135020804 G A KNDC1 Missense_Mutation p.R1248H 0.25 deleterious(0) possibly_damaging(0.836) TCGA-G4-6320-01 10 135083932 135083932 C T ADAM8 Missense_Mutation p.A573T 0.14 deleterious(0.02) probably_damaging(0.969) TCGA-G4-6320-01 10 135086334 135086334 G A ADAM8 Missense_Mutation p.R225W 0.21 deleterious(0) probably_damaging(0.996) TCGA-G4-6320-01 10 135093316 135093316 C T TUBGCP2 Missense_Mutation p.R916Q 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-G4-6320-01 10 16526413 16526413 C T PTER Silent p.T10T 0.24 TCGA-G4-6320-01 10 18828550 18828550 G A CACNB2 Missense_Mutation p.R627H 0.16 tolerated_low_confidence(0.18) benign(0.028) TCGA-G4-6320-01 10 27462084 27462084 G A MASTL Missense_Mutation p.R721Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 10 27552121 27552121 G A ARMC4P1 RNA 0.22 TCGA-G4-6320-01 10 29578104 29578104 G A LYZL1 Missense_Mutation p.A20T 0.14 deleterious_low_confidence(0.02) benign(0) TCGA-G4-6320-01 10 3124597 3124597 C T PFKP Missense_Mutation p.R44C 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 10 33502318 33502318 G A NRP1 Missense_Mutation p.A537V 0.24 tolerated(0.16) benign(0.006) TCGA-G4-6320-01 10 46122015 46122015 G A ZFAND4 Missense_Mutation p.A419V 0.25 tolerated(0.62) benign(0.022) TCGA-G4-6320-01 10 53458628 53458628 G A CSTF2T Silent p.L228L 0.40 TCGA-G4-6320-01 10 54530515 54530516 - G MBL2 Frame_Shift_Ins p.G74Wfs*31 0.17 TCGA-G4-6320-01 10 5568214 5568214 A T CALML3 3'UTR 0.17 TCGA-G4-6320-01 10 55943212 55943212 C A PCDH15 Missense_Mutation p.V528F 0.45 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 10 5789530 5789530 G A FAM208B Silent p.E1382E 0.24 TCGA-G4-6320-01 10 6054760 6054760 G T IL2RA 3'UTR 0.24 TCGA-G4-6320-01 10 64573486 64573486 G T EGR2 Silent p.A304A 0.14 TCGA-G4-6320-01 10 70980116 70980116 C T HKDC1 5'UTR 0.14 TCGA-G4-6320-01 10 72298893 72298893 C T PALD1 Silent p.L539L 0.16 TCGA-G4-6320-01 10 74896476 74896476 T C ECD Missense_Mutation p.T597A 0.07 tolerated(0.08) possibly_damaging(0.489) TCGA-G4-6320-01 10 75533207 75533210 TGAT - FUT11 Frame_Shift_Del p.I324Mfs*24 0.19 TCGA-G4-6320-01 10 75560908 75560908 G A ZSWIM8 Silent p.P1760P 0.14 TCGA-G4-6320-01 10 75567236 75567236 C T NDST2 Missense_Mutation p.R304H 0.07 deleterious(0.03) benign(0.344) TCGA-G4-6320-01 10 81070913 81070913 C T ZMIZ1 Missense_Mutation p.A1023V 0.19 benign(0.198) TCGA-G4-6320-01 10 83635532 83635532 G A NRG3 Missense_Mutation p.A146T 0.18 tolerated(0.37) probably_damaging(0.982) TCGA-G4-6320-01 10 87362147 87362147 G T GRID1 Silent p.P971P 0.22 TCGA-G4-6320-01 10 88414399 88414399 G A OPN4 5'UTR 0.47 TCGA-G4-6320-01 10 91359205 91359205 G T PANK1 Missense_Mutation p.L372I 0.05 tolerated(0.19) probably_damaging(0.989) TCGA-G4-6320-01 10 95517753 95517753 G A LGI1 5'UTR 0.50 TCGA-G4-6320-01 10 97816676 97816676 G A CCNJ Missense_Mutation p.G167S 0.17 tolerated(0.21) probably_damaging(0.995) TCGA-G4-6320-01 10 99358974 99358975 GT - HOGA1 Splice_Site p.X156_splice 0.16 TCGA-G4-6320-01 11 102477310 102477310 G A MMP20 Silent p.D303D 0.18 TCGA-G4-6320-01 11 103870918 103870918 C T PDGFD Missense_Mutation p.V64M 0.14 deleterious(0) possibly_damaging(0.767) TCGA-G4-6320-01 11 104774269 104774269 C A RP11-693N9.2 RNA 0.24 TCGA-G4-6320-01 11 105774675 105774675 C T GRIA4 Nonsense_Mutation p.Q341* 0.23 TCGA-G4-6320-01 11 105842716 105842716 C T GRIA4 Silent p.Y790Y 0.11 TCGA-G4-6320-01 11 108181038 108181038 A - ATM Frame_Shift_Del p.R1973Efs*17 0.17 TCGA-G4-6320-01 11 1102120 1102120 G A MUC2 Missense_Mutation p.V2586M 0.17 unknown(0) TCGA-G4-6320-01 11 111591287 111591287 C T SIK2 Silent p.N527N 0.27 TCGA-G4-6320-01 11 113126644 113126644 G T NCAM1 Missense_Mutation p.G674V 0.16 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 11 116691769 116691769 G A APOA4 Silent p.D335D 0.24 TCGA-G4-6320-01 11 117090339 117090339 C T PCSK7 Missense_Mutation p.V431I 0.19 tolerated(0.07) benign(0.333) TCGA-G4-6320-01 11 117667802 117667802 A G DSCAML1 Missense_Mutation p.L58P 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6320-01 11 118530660 118530660 C T TREH Silent p.Q372Q 0.18 TCGA-G4-6320-01 11 118926029 118926029 G A HYOU1 Missense_Mutation p.T96M 0.20 deleterious(0.03) benign(0.322) TCGA-G4-6320-01 11 120322251 120322251 G A ARHGEF12 Missense_Mutation p.R625H 0.22 deleterious(0) probably_damaging(0.985) TCGA-G4-6320-01 11 120744878 120744878 C T GRIK4 Missense_Mutation p.S337L 0.22 tolerated(0.21) benign(0.308) TCGA-G4-6320-01 11 121986870 121986870 G T BLID 5'UTR 0.22 TCGA-G4-6320-01 11 122830148 122830148 G A C11orf63 Missense_Mutation p.V778I 0.16 deleterious(0.01) benign(0.216) TCGA-G4-6320-01 11 123481028 123481028 G A GRAMD1B Missense_Mutation p.R491Q 0.24 deleterious(0.02) benign(0.382) TCGA-G4-6320-01 11 123777975 123777975 C A OR8D4 Silent p.T279T 0.13 TCGA-G4-6320-01 11 124824660 124824660 G A CCDC15 Missense_Mutation p.R11Q 0.13 tolerated(0.12) benign(0.22) TCGA-G4-6320-01 11 1265741 1265741 C - MUC5B Frame_Shift_Del p.L2545Wfs*65 0.17 TCGA-G4-6320-01 11 1267454 1267454 C T MUC5B Missense_Mutation p.T3115M 0.22 unknown(0) TCGA-G4-6320-01 11 17099204 17099204 G A RPS13 5'UTR 0.32 TCGA-G4-6320-01 11 18158885 18158885 G A MRGPRX3 Missense_Mutation p.A46T 0.15 tolerated(0.14) possibly_damaging(0.643) TCGA-G4-6320-01 11 18736094 18736094 G A IGSF22 Silent p.L537L 0.17 TCGA-G4-6320-01 11 18755142 18755142 G A PTPN5 Silent p.D347D 0.35 TCGA-G4-6320-01 11 18956341 18956341 C A MRGPRX1 5'UTR 0.29 TCGA-G4-6320-01 11 20136155 20136155 C T NAV2 Silent p.A2385A 0.20 TCGA-G4-6320-01 11 20652329 20652329 G A SLC6A5 Missense_Mutation p.R531H 0.14 tolerated(0.06) benign(0.231) TCGA-G4-6320-01 11 22399221 22399221 G A SLC17A6 Missense_Mutation p.E562K 0.26 tolerated(0.2) benign(0.011) TCGA-G4-6320-01 11 2591911 2591911 C T KCNQ1 Silent p.S177S 0.23 TCGA-G4-6320-01 11 33055116 33055116 T A DEPDC7 3'UTR 0.42 TCGA-G4-6320-01 11 34167685 34167687 GAA - NAT10 In_Frame_Del p.K1009del 0.21 TCGA-G4-6320-01 11 34181850 34181850 G A ABTB2 Silent p.G816G 0.14 TCGA-G4-6320-01 11 403108 403108 G A PKP3 Missense_Mutation p.A590T 0.42 tolerated(1) benign(0.005) TCGA-G4-6320-01 11 419639 419639 C T ANO9 Missense_Mutation p.R626Q 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 11 429620 429620 G A ANO9 Missense_Mutation p.R289C 0.07 deleterious(0) probably_damaging(0.994) TCGA-G4-6320-01 11 43472773 43472773 G A TTC17 Silent p.S996S 0.11 TCGA-G4-6320-01 11 45947613 45947613 C T GYLTL1B Missense_Mutation p.R265W 0.08 deleterious(0) probably_damaging(0.987) TCGA-G4-6320-01 11 46334006 46334006 G A CREB3L1 Missense_Mutation p.R295Q 0.28 deleterious(0) probably_damaging(0.985) TCGA-G4-6320-01 11 46391071 46391071 C T DGKZ Missense_Mutation p.R346C 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-G4-6320-01 11 47304002 47304002 C T MADD Missense_Mutation p.R514C 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 11 47364480 47364480 G - MYBPC3 Frame_Shift_Del p.P453Lfs*13 0.23 TCGA-G4-6320-01 11 48149569 48149569 C T PTPRJ Missense_Mutation p.T444M 0.22 tolerated(0.12) benign(0.223) TCGA-G4-6320-01 11 48511047 48511047 C A OR4A47 Missense_Mutation p.L235I 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.881) TCGA-G4-6320-01 11 4869738 4869738 C T OR51S1 Missense_Mutation p.G234D 0.12 tolerated(0.09) probably_damaging(0.914) TCGA-G4-6320-01 11 489666 489666 C T PTDSS2 Missense_Mutation p.R350W 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 11 49207400 49207400 T - FOLH1 Frame_Shift_Del p.N216Mfs*24 0.19 TCGA-G4-6320-01 11 4976334 4976335 - A OR51A2 Frame_Shift_Ins p.G204Wfs*34 0.16 TCGA-G4-6320-01 11 5269718 5269718 C T HBG1 Splice_Site p.X106_splice 0.15 TCGA-G4-6320-01 11 55032430 55032430 C A TRIM48 Silent p.I33I 0.49 TCGA-G4-6320-01 11 551775 551775 C T LRRC56 Silent p.G307G 0.20 TCGA-G4-6320-01 11 55594728 55594728 T G OR5L2 Missense_Mutation p.F12V 0.45 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 11 57077202 57077202 C T TNKS1BP1 Missense_Mutation p.D995N 0.24 tolerated(0.07) benign(0.286) TCGA-G4-6320-01 11 58723154 58723154 G A GLYATL1 Missense_Mutation p.R219Q 0.19 deleterious(0.01) benign(0.012) TCGA-G4-6320-01 11 587278 587278 C T PHRF1 Silent p.D78D 0.25 TCGA-G4-6320-01 11 59609943 59609943 G A GIF Silent p.L162L 0.37 TCGA-G4-6320-01 11 61511391 61511391 G A DAGLA Silent p.T853T 0.33 TCGA-G4-6320-01 11 61551826 61551827 CA - MYRF Frame_Shift_Del p.Q1091Efs*24 0.24 TCGA-G4-6320-01 11 62291350 62291350 C T AHNAK Silent p.E3513E 0.28 TCGA-G4-6320-01 11 62291672 62291672 G T AHNAK Missense_Mutation p.P3406H 0.27 probably_damaging(0.999) TCGA-G4-6320-01 11 62361874 62361874 T - MTA2 Frame_Shift_Del p.A568Qfs*29 0.21 TCGA-G4-6320-01 11 62543356 62543356 C T TAF6L Missense_Mutation p.A34V 0.20 deleterious(0.01) probably_damaging(0.911) TCGA-G4-6320-01 11 62554261 62554261 A G TAF6L Silent p.T454T 0.18 TCGA-G4-6320-01 11 64132774 64132774 G A RPS6KA4 Missense_Mutation p.G303D 0.22 tolerated(0.33) benign(0.022) TCGA-G4-6320-01 11 64559444 64559444 G A MAP4K2 Missense_Mutation p.R677C 0.28 tolerated(0.05) benign(0.096) TCGA-G4-6320-01 11 64658897 64658898 - G ATG2A 3'Flank 0.24 TCGA-G4-6320-01 11 64662610 64662610 G A ATG2A Silent p.G1884G 0.25 TCGA-G4-6320-01 11 64875384 64875384 C T VPS51 Silent p.R205R 0.31 TCGA-G4-6320-01 11 65545457 65545457 G - AP5B1 Frame_Shift_Del p.P836Rfs*65 0.10 TCGA-G4-6320-01 11 65810468 65810468 G A GAL3ST3 Missense_Mutation p.A269V 0.44 tolerated(0.48) benign(0.006) TCGA-G4-6320-01 11 66130987 66130987 C A SLC29A2 Missense_Mutation p.G431C 0.37 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 11 66460207 66460207 G A SPTBN2 Missense_Mutation p.R1664W 0.08 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 11 6646670 6646670 T C DCHS1 Missense_Mutation p.D2302G 0.05 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 11 66975158 66975158 C T KDM2A Missense_Mutation p.T162M 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-G4-6320-01 11 67068972 67068972 G A ANKRD13D Silent p.P454P 0.29 TCGA-G4-6320-01 11 67258296 67258296 C T AIP Silent p.H275H 0.31 TCGA-G4-6320-01 11 67765852 67765852 G A UNC93B1 Missense_Mutation p.T253M 0.14 deleterious(0) probably_damaging(0.957) TCGA-G4-6320-01 11 68174125 68174127 CTT - LRP5 In_Frame_Del p.F646del 0.12 TCGA-G4-6320-01 11 70007810 70007810 C T ANO1 Silent p.P621P 0.12 TCGA-G4-6320-01 11 7063826 7063826 C - NLRP14 Frame_Shift_Del p.T190Kfs*4 0.19 TCGA-G4-6320-01 11 71949466 71949466 G T INPPL1 3'UTR 0.20 TCGA-G4-6320-01 11 72438151 72438151 G A ARAP1 Missense_Mutation p.A8V 0.12 tolerated(0.14) benign(0.025) TCGA-G4-6320-01 11 72540456 72540456 G T ATG16L2 3'UTR 0.22 TCGA-G4-6320-01 11 73106249 73106249 C - RELT Frame_Shift_Del p.P390Lfs*7 0.19 TCGA-G4-6320-01 11 73689474 73689474 G A UCP2 5'UTR 0.19 TCGA-G4-6320-01 11 74676097 74676097 C T SPCS2 Missense_Mutation p.P45S 0.23 deleterious(0.04) possibly_damaging(0.753) TCGA-G4-6320-01 11 75280000 75280000 C T SERPINH1 Silent p.Y246Y 0.24 TCGA-G4-6320-01 11 77320575 77320575 A - AQP11 3'UTR 0.29 TCGA-G4-6320-01 11 78440529 78440529 G A TENM4 Missense_Mutation p.R1100C 0.08 deleterious(0.02) possibly_damaging(0.899) TCGA-G4-6320-01 11 85375589 85375589 G T CREBZF Missense_Mutation p.L111M 0.32 deleterious(0.02) probably_damaging(0.986) TCGA-G4-6320-01 11 88337911 88337911 C A GRM5 Missense_Mutation p.D457Y 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 11 89069055 89069055 C T NOX4 Missense_Mutation p.R525Q 0.17 tolerated(0.28) benign(0.014) TCGA-G4-6320-01 11 9750921 9750921 T - SWAP70 Frame_Shift_Del p.L276Sfs*2 0.20 TCGA-G4-6320-01 11 9754248 9754248 C T SWAP70 Silent p.A357A 0.24 TCGA-G4-6320-01 12 10005998 10005998 C T CLEC2B Missense_Mutation p.M117I 0.16 tolerated(0.67) benign(0) TCGA-G4-6320-01 12 100492261 100492261 C T UHRF1BP1L Missense_Mutation p.V133I 0.20 tolerated(0.56) benign(0.001) TCGA-G4-6320-01 12 101505407 101505407 C T ANO4 Missense_Mutation p.A755V 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 12 101705568 101705568 C T UTP20 Missense_Mutation p.T768M 0.26 tolerated(0.12) benign(0.139) TCGA-G4-6320-01 12 101801501 101801501 C T ARL1 5'UTR 0.23 TCGA-G4-6320-01 12 104732921 104732921 G A TXNRD1 Missense_Mutation p.R584H 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6320-01 12 106460619 106460619 G T NUAK1 Silent p.V649V 0.13 TCGA-G4-6320-01 12 106461059 106461059 A - NUAK1 Frame_Shift_Del p.S503Pfs*10 0.14 TCGA-G4-6320-01 12 108641809 108641809 A G WSCD2 Missense_Mutation p.T463A 0.22 deleterious(0) benign(0.257) TCGA-G4-6320-01 12 109016885 109016885 C T SELPLG Missense_Mutation p.R416H 0.23 tolerated(0.18) benign(0.18) TCGA-G4-6320-01 12 109041222 109041222 C T CORO1C Missense_Mutation p.R461H 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6320-01 12 109288131 109288131 G T DAO Silent p.G200G 0.29 TCGA-G4-6320-01 12 110236432 110236432 G A TRPV4 Missense_Mutation p.T380M 0.22 deleterious(0.04) benign(0.064) TCGA-G4-6320-01 12 111348962 111348962 G A MYL2 Silent p.A140A 0.19 TCGA-G4-6320-01 12 111729227 111729227 G A CUX2 Missense_Mutation p.V103M 0.21 deleterious(0) benign(0.323) TCGA-G4-6320-01 12 111885145 111885145 G - SH2B3 Frame_Shift_Del p.L347Cfs*26 0.22 TCGA-G4-6320-01 12 112369577 112369577 G A TMEM116 Nonsense_Mutation p.Q288* 0.07 TCGA-G4-6320-01 12 11244269 11244269 G A TAS2R43 Missense_Mutation p.P187L 0.31 deleterious(0.02) probably_damaging(0.929) TCGA-G4-6320-01 12 113553049 113553049 G T RASAL1 Missense_Mutation p.R342S 0.06 deleterious(0) probably_damaging(0.99) TCGA-G4-6320-01 12 113614667 113614667 C T DDX54 Missense_Mutation p.V244M 0.22 deleterious(0) probably_damaging(0.981) TCGA-G4-6320-01 12 118627721 118627721 G A TAOK3 Missense_Mutation p.A407V 0.24 tolerated(0.53) benign(0.001) TCGA-G4-6320-01 12 11905506 11905506 G A ETV6 Silent p.A52A 0.15 TCGA-G4-6320-01 12 120587473 120587473 C - GCN1L1 Frame_Shift_Del p.V1495* 0.22 TCGA-G4-6320-01 12 120662178 120662178 C T PXN Missense_Mutation p.A6T 0.29 deleterious_low_confidence(0) unknown(0) TCGA-G4-6320-01 12 122248356 122248356 G A SETD1B Missense_Mutation p.R502H 0.25 probably_damaging(0.987) TCGA-G4-6320-01 12 123270274 123270274 C T CCDC62 Silent p.N135N 0.23 TCGA-G4-6320-01 12 123793881 123793881 G A SBNO1 Silent p.D1202D 0.25 TCGA-G4-6320-01 12 124069186 124069186 G T TMED2 Translation_Start_Site p.M1? 0.31 deleterious(0.04) unknown(0) TCGA-G4-6320-01 12 124343730 124343730 T C DNAH10 Silent p.L2104L 0.24 TCGA-G4-6320-01 12 124399436 124399436 G A DNAH10 Missense_Mutation p.V3420I 0.39 benign(0.104) TCGA-G4-6320-01 12 124499284 124499285 - TGAC ZNF664 3'UTR 0.09 TCGA-G4-6320-01 12 124810740 124810740 C T NCOR2 Missense_Mutation p.A2454T 0.48 possibly_damaging(0.555) TCGA-G4-6320-01 12 130647539 130647539 T C FZD10 Missense_Mutation p.C18R 0.10 tolerated(0.09) probably_damaging(0.991) TCGA-G4-6320-01 12 130929761 130929761 G A RIMBP2 Missense_Mutation p.T195M 0.19 deleterious(0) probably_damaging(0.973) TCGA-G4-6320-01 12 132401015 132401015 G A ULK1 Missense_Mutation p.V651M 0.19 tolerated(0.12) benign(0.017) TCGA-G4-6320-01 12 132530327 132530327 A T EP400 Missense_Mutation p.H2361L 0.22 unknown(0) TCGA-G4-6320-01 12 132636145 132636145 G T NOC4L Missense_Mutation p.R397L 0.34 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 12 133430036 133430036 C A CHFR Silent p.T463T 0.17 TCGA-G4-6320-01 12 21680720 21680720 C T C12orf39 Missense_Mutation p.P69S 0.24 tolerated(0.57) benign(0.018) TCGA-G4-6320-01 12 21962865 21962865 T - ABCC9 Frame_Shift_Del p.K1412Nfs*11 0.08 TCGA-G4-6320-01 12 248419 248419 G A IQSEC3 Silent p.P630P 0.22 TCGA-G4-6320-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.11 deleterious(0.04) possibly_damaging(0.506) TCGA-G4-6320-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.28 deleterious(0) benign(0.361) TCGA-G4-6320-01 12 26384078 26384078 T A SSPN 3'UTR 0.28 TCGA-G4-6320-01 12 27058239 27058239 C A ASUN 3'UTR 0.21 TCGA-G4-6320-01 12 27234044 27234044 G A C12orf71 3'UTR 0.46 TCGA-G4-6320-01 12 27533206 27533206 G A ARNTL2 Missense_Mutation p.R118Q 0.15 deleterious(0) probably_damaging(0.979) TCGA-G4-6320-01 12 2788786 2788786 C T CACNA1C Silent p.S1804S 0.15 TCGA-G4-6320-01 12 29920890 29920890 G A TMTC1 Missense_Mutation p.R141C 0.31 tolerated(0.11) benign(0.006) TCGA-G4-6320-01 12 39760249 39760249 T A KIF21A Missense_Mutation p.K269M 0.20 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 12 41312565 41312565 G A CNTN1 Silent p.P73P 0.23 TCGA-G4-6320-01 12 41463778 41463778 C A CNTN1 Missense_Mutation p.P1000T 0.19 tolerated_low_confidence(0.15) benign(0.001) TCGA-G4-6320-01 12 42707740 42707740 G A ZCRB1 Missense_Mutation p.R128C 0.22 deleterious(0.01) benign(0.059) TCGA-G4-6320-01 12 43840515 43840515 C T ADAMTS20 Missense_Mutation p.A694T 0.14 deleterious(0) benign(0.185) TCGA-G4-6320-01 12 4705836 4705836 G A DYRK4 Silent p.V167V 0.23 TCGA-G4-6320-01 12 48134660 48134660 C T RAPGEF3 Intron 0.21 TCGA-G4-6320-01 12 48368077 48368077 G A COL2A1 Missense_Mutation p.A1371V 0.23 unknown(0) TCGA-G4-6320-01 12 49225894 49225894 G A DDX23 Silent p.C677C 0.22 TCGA-G4-6320-01 12 49430961 49430961 G A KMT2D Missense_Mutation p.P3393L 0.24 probably_damaging(0.992) TCGA-G4-6320-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.18 TCGA-G4-6320-01 12 49719364 49719364 C T TROAP Missense_Mutation p.H140Y 0.11 tolerated(1) benign(0.004) TCGA-G4-6320-01 12 49937252 49937252 C T KCNH3 Silent p.R258R 0.26 TCGA-G4-6320-01 12 5027383 5027383 G C KCNA1 3'UTR 0.10 TCGA-G4-6320-01 12 50745828 50745828 G A FAM186A Missense_Mutation p.A1596V 0.17 tolerated(0.09) benign(0.391) TCGA-G4-6320-01 12 51213745 51213745 C A ATF1 3'UTR 0.39 TCGA-G4-6320-01 12 53207442 53207442 C T KRT4 Missense_Mutation p.R134Q 0.13 deleterious(0.01) probably_damaging(0.965) TCGA-G4-6320-01 12 53215778 53215778 C - KRT79 Frame_Shift_Del p.A496Pfs*43 0.37 TCGA-G4-6320-01 12 54106831 54106831 C A CALCOCO1 Intron 0.24 TCGA-G4-6320-01 12 54107976 54107976 G A CALCOCO1 Missense_Mutation p.A511V 0.20 tolerated(0.05) probably_damaging(0.996) TCGA-G4-6320-01 12 56492641 56492641 G A ERBB3 Missense_Mutation p.A931T 0.22 deleterious(0.01) benign(0.158) TCGA-G4-6320-01 12 56737283 56737283 T C STAT2 Missense_Mutation p.M816V 0.23 deleterious_low_confidence(0.01) benign(0.345) TCGA-G4-6320-01 12 56847488 56847488 T C MIP Missense_Mutation p.T138A 0.36 deleterious(0) possibly_damaging(0.565) TCGA-G4-6320-01 12 57112025 57112025 G T NACA Intron 0.32 TCGA-G4-6320-01 12 57144840 57144840 G A PRIM1 Silent p.G81G 0.05 TCGA-G4-6320-01 12 57496185 57496185 C T STAT6 Missense_Mutation p.R467Q 0.20 tolerated(0.24) benign(0.008) TCGA-G4-6320-01 12 57603899 57603899 G A LRP1 Missense_Mutation p.R4176Q 0.13 benign(0.187) TCGA-G4-6320-01 12 57638357 57638357 G A STAC3 Missense_Mutation p.R257W 0.23 deleterious(0) possibly_damaging(0.737) TCGA-G4-6320-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.30 TCGA-G4-6320-01 12 57929304 57929304 G T DCTN2 Missense_Mutation p.T81N 0.36 tolerated(0.38) benign(0.001) TCGA-G4-6320-01 12 63544265 63544265 G A AVPR1A Missense_Mutation p.R118C 0.27 tolerated(0.06) benign(0.089) TCGA-G4-6320-01 12 64015077 64015077 G T DPY19L2 Missense_Mutation p.L332I 0.22 tolerated(1) benign(0.016) TCGA-G4-6320-01 12 6559939 6559939 C T CD27 Intron 0.27 TCGA-G4-6320-01 12 6650785 6650785 G A IFFO1 Silent p.N493N 0.17 TCGA-G4-6320-01 12 6697481 6697481 G A CHD4 Missense_Mutation p.P1150S 0.18 deleterious(0) benign(0.003) TCGA-G4-6320-01 12 7051003 7051003 C - ATN1 3'UTR 0.12 TCGA-G4-6320-01 12 71054744 71054744 C T PTPRR Missense_Mutation p.R581Q 0.22 tolerated(0.23) benign(0.237) TCGA-G4-6320-01 12 75601771 75601771 A G KCNC2 5'UTR 0.18 TCGA-G4-6320-01 12 7942270 7942270 A G NANOG Silent p.K20K 0.11 TCGA-G4-6320-01 12 80647295 80647295 C T OTOGL Silent p.C436C 0.12 TCGA-G4-6320-01 12 81533005 81533005 C A ACSS3 Missense_Mutation p.H247Q 0.47 deleterious(0.01) benign(0.444) TCGA-G4-6320-01 12 86198390 86198390 T - RASSF9 3'UTR 0.22 TCGA-G4-6320-01 12 97137829 97137829 G A C12orf55 Missense_Mutation p.R2530H 0.09 tolerated(0.56) benign(0.007) TCGA-G4-6320-01 12 99053087 99053087 C T APAF1 Missense_Mutation p.R226C 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 13 102378962 102378962 C T FGF14 Missense_Mutation p.V208I 0.20 deleterious(0.05) benign(0.363) TCGA-G4-6320-01 13 109318471 109318471 C T MYO16 Missense_Mutation p.A67V 0.20 deleterious(0.02) probably_damaging(1) TCGA-G4-6320-01 13 111368074 111368074 C A ING1 Missense_Mutation p.A95E 0.08 deleterious_low_confidence(0) benign(0.006) TCGA-G4-6320-01 13 113473628 113473628 C T ATP11A Missense_Mutation p.A194V 0.17 tolerated(0.1) possibly_damaging(0.663) TCGA-G4-6320-01 13 113741751 113741751 G A MCF2L Missense_Mutation p.S859N 0.20 deleterious(0) benign(0.129) TCGA-G4-6320-01 13 113768217 113768217 C G F7 Missense_Mutation p.L125V 0.10 tolerated(0.19) possibly_damaging(0.481) TCGA-G4-6320-01 13 115007695 115007695 G A CDC16 Missense_Mutation p.V161I 0.16 tolerated(0.12) benign(0.14) TCGA-G4-6320-01 13 21555625 21555625 G A LATS2 Missense_Mutation p.P882L 0.12 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 13 28010023 28010025 ATC - MTIF3 In_Frame_Del p.I209del 0.18 TCGA-G4-6320-01 13 30002933 30002933 C T MTUS2 Intron 0.10 TCGA-G4-6320-01 13 30782702 30782702 C A KATNAL1 Missense_Mutation p.W483L 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 13 32811615 32811615 C T FRY Silent p.T1970T 0.18 TCGA-G4-6320-01 13 36805294 36805295 AA G CCDC169 Intron 0.18 TCGA-G4-6320-01 13 37453538 37453538 G T SMAD9 Missense_Mutation p.R97S 0.25 deleterious(0.01) probably_damaging(1) TCGA-G4-6320-01 13 41134890 41134890 G A FOXO1 Silent p.S246S 0.73 TCGA-G4-6320-01 13 43930222 43930222 G T ENOX1 Missense_Mutation p.A219D 0.13 deleterious(0) probably_damaging(0.917) TCGA-G4-6320-01 13 45149713 45149713 C T TSC22D1 Silent p.G166G 0.11 TCGA-G4-6320-01 13 47355691 47355691 G A ESD Silent p.G147G 0.09 TCGA-G4-6320-01 13 47466673 47466673 G A HTR2A Silent p.D155D 0.15 TCGA-G4-6320-01 13 51918556 51918556 C T SERPINE3 Missense_Mutation p.A142V 0.13 tolerated(0.25) benign(0.084) TCGA-G4-6320-01 13 52025234 52025234 C T INTS6 Missense_Mutation p.G89D 0.13 deleterious(0) probably_damaging(0.994) TCGA-G4-6320-01 13 52343178 52343178 C - DHRS12 Intron 0.18 TCGA-G4-6320-01 13 52865673 52865673 C A RP11-248G5.8 RNA 0.17 TCGA-G4-6320-01 13 72440415 72440415 T A DACH1 Missense_Mutation p.S165C 0.13 benign(0.033) TCGA-G4-6320-01 13 76415285 76415285 G T LMO7 Missense_Mutation p.W975L 0.12 deleterious(0) probably_damaging(0.995) TCGA-G4-6320-01 13 76431922 76431922 C A LMO7 Intron 0.16 TCGA-G4-6320-01 13 78317245 78317245 T C SLAIN1 Intron 0.11 TCGA-G4-6320-01 13 96234308 96234308 G A DZIP1 3'UTR 0.15 TCGA-G4-6320-01 13 96635830 96635830 G A UGGT2 Intron 0.22 TCGA-G4-6320-01 13 97640015 97640015 G A OXGR1 5'UTR 0.23 TCGA-G4-6320-01 14 102508994 102508994 C T DYNC1H1 Missense_Mutation p.A4141V 0.05 benign(0.379) TCGA-G4-6320-01 14 103180827 103180827 C T RCOR1 Missense_Mutation p.A309V 0.05 tolerated(0.35) benign(0.406) TCGA-G4-6320-01 14 105169745 105169745 C T INF2 Silent p.G207G 0.12 TCGA-G4-6320-01 14 105408302 105408302 C T AHNAK2 Missense_Mutation p.D4496N 0.42 possibly_damaging(0.786) TCGA-G4-6320-01 14 106322069 106322069 G A IGHM Silent p.H85H 0.31 TCGA-G4-6320-01 14 19378381 19378381 T C OR11H12 Missense_Mutation p.V263A 0.15 deleterious(0) possibly_damaging(0.562) TCGA-G4-6320-01 14 20296318 20296318 G C OR4N2 Missense_Mutation p.M237I 0.13 tolerated(0.2) benign(0.001) TCGA-G4-6320-01 14 20443996 20443996 G T OR4K15 Missense_Mutation p.A107S 0.25 tolerated(0.37) benign(0.014) TCGA-G4-6320-01 14 23346007 23346007 C T LRP10 Missense_Mutation p.P512S 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 14 24841791 24841791 C T NFATC4 Silent p.G510G 0.07 TCGA-G4-6320-01 14 24885240 24885240 C A NYNRIN Silent p.R1429R 0.20 TCGA-G4-6320-01 14 24886096 24886096 C T NYNRIN Missense_Mutation p.T1714M 0.22 tolerated_low_confidence(0.44) benign(0.005) TCGA-G4-6320-01 14 25100196 25100196 G C GZMB 3'UTR 0.24 TCGA-G4-6320-01 14 27066542 27066542 G - NOVA1 Frame_Shift_Del p.P34Lfs*19 0.19 TCGA-G4-6320-01 14 29261544 29261544 C T C14orf23 3'UTR 0.28 TCGA-G4-6320-01 14 36988561 36988561 A T NKX2-1 Missense_Mutation p.M31K 0.38 deleterious(0) probably_damaging(0.964) TCGA-G4-6320-01 14 45433527 45433527 C T FAM179B Missense_Mutation p.H635Y 0.27 tolerated(0.29) benign(0.022) TCGA-G4-6320-01 14 47120959 47120959 C T RPL10L 5'UTR 0.17 TCGA-G4-6320-01 14 50256049 50256049 T C NEMF Missense_Mutation p.N904D 0.18 tolerated(0.68) benign(0.046) TCGA-G4-6320-01 14 51561330 51561330 C T TRIM9 Missense_Mutation p.A110T 0.33 tolerated(0.37) benign(0.039) TCGA-G4-6320-01 14 54898881 54898881 C T CNIH1 Missense_Mutation p.A70T 0.22 tolerated(0.14) benign(0.034) TCGA-G4-6320-01 14 58833719 58833719 A - ARID4A Frame_Shift_Del p.R1216Dfs*2 0.16 TCGA-G4-6320-01 14 63174850 63174850 G T KCNH5 Silent p.A781A 0.23 TCGA-G4-6320-01 14 69529156 69529156 C T DCAF5 Missense_Mutation p.R340Q 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6320-01 14 73491308 73491308 G A ZFYVE1 5'UTR 0.18 TCGA-G4-6320-01 14 74532032 74532032 A G ALDH6A1 Missense_Mutation p.F419S 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 14 75276667 75276667 G A YLPM1 Missense_Mutation p.R1665H 0.18 possibly_damaging(0.891) TCGA-G4-6320-01 14 77732918 77732918 G A NGB Silent p.A139A 0.21 TCGA-G4-6320-01 14 77753149 77753149 G A POMT2 Missense_Mutation p.H424Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 14 81663810 81663810 C A GTF2A1 Missense_Mutation p.A141S 0.28 tolerated(0.45) possibly_damaging(0.527) TCGA-G4-6320-01 14 86092081 86092081 C A FLRT2 3'UTR 0.14 TCGA-G4-6320-01 14 88883069 88883069 C A SPATA7 Silent p.R85R 0.24 TCGA-G4-6320-01 14 95234746 95234746 C T GSC 3'UTR 0.17 TCGA-G4-6320-01 14 95923536 95923536 G A SYNE3 Missense_Mutation p.T256M 0.19 deleterious(0.01) benign(0.117) TCGA-G4-6320-01 14 96730588 96730588 T C BDKRB1 Missense_Mutation p.I190T 0.06 tolerated(0.33) benign(0.047) TCGA-G4-6320-01 15 101169722 101169722 C T ASB7 Missense_Mutation p.R98C 0.20 deleterious(0) probably_damaging(0.939) TCGA-G4-6320-01 15 101589861 101589861 C T LRRK1 Silent p.S1104S 0.17 TCGA-G4-6320-01 15 23293474 23293474 C A HERC2P2 RNA 0.29 TCGA-G4-6320-01 15 24921560 24921560 C T NPAP1 Silent p.S182S 0.12 TCGA-G4-6320-01 15 24928432 24928432 G A NPAP1 3'UTR 0.19 TCGA-G4-6320-01 15 25222133 25222133 G T SNRPN Missense_Mutation p.G126V 0.34 deleterious(0.05) possibly_damaging(0.788) TCGA-G4-6320-01 15 28457699 28457699 G T HERC2 Missense_Mutation p.L2273M 0.19 benign(0.145) TCGA-G4-6320-01 15 29428678 29428678 G A FAM189A1 Missense_Mutation p.S273F 0.26 tolerated(0.22) probably_damaging(0.962) TCGA-G4-6320-01 15 33999248 33999248 C T RYR3 Silent p.F2204F 0.24 TCGA-G4-6320-01 15 39544969 39544969 A G C15orf54 3'UTR 0.17 TCGA-G4-6320-01 15 41797050 41797050 C - LTK Frame_Shift_Del p.D681Tfs*76 0.21 TCGA-G4-6320-01 15 41854822 41854822 T C TYRO3 Silent p.A162A 0.14 TCGA-G4-6320-01 15 42117615 42117615 G A MAPKBP1 Missense_Mutation p.R1509H 0.23 deleterious(0) probably_damaging(0.96) TCGA-G4-6320-01 15 42185411 42185411 C A SPTBN5 Intron 0.10 TCGA-G4-6320-01 15 42553155 42553155 C T TMEM87A Splice_Site p.X168_splice 0.19 TCGA-G4-6320-01 15 43021552 43021552 G A CDAN1 Missense_Mutation p.R806W 0.24 deleterious(0) probably_damaging(0.995) TCGA-G4-6320-01 15 44166036 44166036 G T FRMD5 3'UTR 0.23 TCGA-G4-6320-01 15 45433248 45433248 G T DUOX1 Missense_Mutation p.W515C 0.07 deleterious(0) probably_damaging(0.99) TCGA-G4-6320-01 15 48717640 48717640 T A FBN1 Missense_Mutation p.K2460I 0.29 possibly_damaging(0.877) TCGA-G4-6320-01 15 49917558 49917558 G A DTWD1 Missense_Mutation p.R65K 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 15 50515214 50515214 G A SLC27A2 Missense_Mutation p.R342Q 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6320-01 15 51975275 51975275 G T SCG3 Splice_Site p.X46_splice 0.39 TCGA-G4-6320-01 15 52646103 52646103 G A MYO5A Missense_Mutation p.R1178C 0.19 deleterious(0.02) benign(0) TCGA-G4-6320-01 15 53081890 53081890 G A ONECUT1 Silent p.G64G 0.19 TCGA-G4-6320-01 15 56208977 56208977 G T NEDD4 Missense_Mutation p.P18H 0.05 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-G4-6320-01 15 56208999 56208999 C T NEDD4 Missense_Mutation p.A11T 0.14 tolerated_low_confidence(0.23) benign(0.121) TCGA-G4-6320-01 15 59752394 59752394 C T FAM81A Missense_Mutation p.R95W 0.21 deleterious(0) probably_damaging(0.996) TCGA-G4-6320-01 15 63029147 63029147 G A TLN2 Silent p.S1143S 0.26 TCGA-G4-6320-01 15 65157552 65157552 C A PLEKHO2 Missense_Mutation p.P313Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 15 65917342 65917342 G T SLC24A1 Missense_Mutation p.Q308H 0.25 benign(0.078) TCGA-G4-6320-01 15 65917960 65917960 C T SLC24A1 Silent p.I514I 0.22 TCGA-G4-6320-01 15 66857758 66857758 G A LCTL 5'UTR 0.14 TCGA-G4-6320-01 15 69072356 69072356 G A ANP32A 3'UTR 0.20 TCGA-G4-6320-01 15 70351076 70351077 - T TLE3 Frame_Shift_Ins p.D282Rfs*14 0.23 TCGA-G4-6320-01 15 74032903 74032903 G T C15orf59 Missense_Mutation p.S79R 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6320-01 15 74428443 74428443 G A ISLR2 3'UTR 0.17 TCGA-G4-6320-01 15 79224737 79224737 C T CTSH Missense_Mutation p.A157T 0.14 tolerated(0.2) benign(0.015) TCGA-G4-6320-01 15 79586424 79586424 G A ANKRD34C Silent p.S266S 0.27 TCGA-G4-6320-01 15 79587132 79587132 A G ANKRD34C Silent p.P502P 0.44 TCGA-G4-6320-01 15 79589126 79589127 - A ANKRD34C 3'UTR 0.24 TCGA-G4-6320-01 15 80762692 80762692 G A ARNT2 Missense_Mutation p.V110I 0.11 deleterious(0.03) benign(0.312) TCGA-G4-6320-01 15 80762703 80762703 G T ARNT2 Missense_Mutation p.M113I 0.25 deleterious(0.01) benign(0.072) TCGA-G4-6320-01 15 83532927 83532927 G T HOMER2 Missense_Mutation p.H127N 0.09 tolerated(0.33) benign(0.06) TCGA-G4-6320-01 15 83926345 83926345 G A BNC1 Missense_Mutation p.A945V 0.04 tolerated(0.37) probably_damaging(1) TCGA-G4-6320-01 15 83931954 83931954 G A BNC1 Silent p.L683L 0.30 TCGA-G4-6320-01 15 90903817 90903817 A G ZNF774 Missense_Mutation p.M252V 0.07 tolerated(0.29) benign(0.002) TCGA-G4-6320-01 15 91425102 91425102 C A FURIN Silent p.A793A 0.26 TCGA-G4-6320-01 15 99696393 99696393 G A TTC23 Missense_Mutation p.A368V 0.18 tolerated(0.06) benign(0.196) TCGA-G4-6320-01 15 99796216 99796216 G T LRRC28 Missense_Mutation p.K18N 0.38 tolerated(0.1) possibly_damaging(0.572) TCGA-G4-6320-01 16 11370293 11370293 C T PRM2 5'UTR 0.11 TCGA-G4-6320-01 16 15131990 15131990 T - NTAN1 Frame_Shift_Del p.K277Nfs*83 0.19 TCGA-G4-6320-01 16 15489988 15489988 G A MPV17L Silent p.A78A 0.20 TCGA-G4-6320-01 16 1825289 1825289 C T EME2 Intron 0.19 TCGA-G4-6320-01 16 18800302 18800302 C T RPS15A Splice_Site p.X45_splice 0.11 TCGA-G4-6320-01 16 19488804 19488804 C A TMC5 Nonsense_Mutation p.Y711* 0.21 TCGA-G4-6320-01 16 19488822 19488822 G A TMC5 Silent p.V717V 0.21 TCGA-G4-6320-01 16 2017794 2017794 G A RNF151 Missense_Mutation p.R73Q 0.17 tolerated(0.31) benign(0.017) TCGA-G4-6320-01 16 204444 204444 G A HBZ 3'UTR 0.21 TCGA-G4-6320-01 16 2100437 2100437 C T TSC2 Missense_Mutation p.R59W 0.40 deleterious(0) probably_damaging(0.992) TCGA-G4-6320-01 16 2237241 2237241 C T CASKIN1 Missense_Mutation p.S254N 0.15 benign(0.016) TCGA-G4-6320-01 16 2304032 2304032 C T RNPS1 Missense_Mutation p.R284H 0.20 tolerated_low_confidence(0.19) unknown(0) TCGA-G4-6320-01 16 23391912 23391912 C T SCNN1B Silent p.Y571Y 0.37 TCGA-G4-6320-01 16 2522798 2522798 G A NTN3 Missense_Mutation p.R342Q 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-G4-6320-01 16 27080050 27080050 T C C16orf82 RNA 0.14 TCGA-G4-6320-01 16 27237089 27237089 G A NSMCE1 Missense_Mutation p.R227C 0.16 deleterious(0.05) possibly_damaging(0.868) TCGA-G4-6320-01 16 2807894 2807894 C T SRRM2 Missense_Mutation p.R155C 0.23 unknown(0) TCGA-G4-6320-01 16 2813698 2813698 C T SRRM2 Silent p.L1057L 0.06 TCGA-G4-6320-01 16 28842100 28842100 G C ATXN2L Missense_Mutation p.G400A 0.09 tolerated(0.81) possibly_damaging(0.546) TCGA-G4-6320-01 16 28855344 28855344 C T TUFM Missense_Mutation p.R334Q 0.22 deleterious(0) possibly_damaging(0.747) TCGA-G4-6320-01 16 29906604 29906604 C T SEZ6L2 Missense_Mutation p.G277S 0.14 tolerated(0.05) possibly_damaging(0.635) TCGA-G4-6320-01 16 3065525 3065526 - A CLDN6 Frame_Shift_Ins p.L166Ffs*48 0.18 TCGA-G4-6320-01 16 30673894 30673894 G A FBRS Missense_Mutation p.G257S 0.16 probably_damaging(0.934) TCGA-G4-6320-01 16 30680763 30680763 C T FBRS Missense_Mutation p.R914C 0.28 benign(0.439) TCGA-G4-6320-01 16 30762447 30762447 G A PHKG2 Missense_Mutation p.R39H 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 16 31051106 31051106 C T STX4 Silent p.G292G 0.34 TCGA-G4-6320-01 16 3170000 3170000 C T ZNF205 Missense_Mutation p.P447S 0.11 deleterious(0.01) probably_damaging(1) TCGA-G4-6320-01 16 3406769 3406769 T C OR2C1 Missense_Mutation p.F277L 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-G4-6320-01 16 4432904 4432905 AG - VASN 3'UTR 0.19 TCGA-G4-6320-01 16 4751047 4751047 C T ANKS3 Missense_Mutation p.R403H 0.05 tolerated(0.11) benign(0.002) TCGA-G4-6320-01 16 47684785 47684785 A - PHKB Frame_Shift_Del p.G644Efs*2 0.10 TCGA-G4-6320-01 16 48173077 48173077 G T ABCC12 Silent p.V276V 0.08 TCGA-G4-6320-01 16 50327319 50327319 G A ADCY7 Missense_Mutation p.A248T 0.06 tolerated(0.17) benign(0.04) TCGA-G4-6320-01 16 50667740 50667740 G A NKD1 3'UTR 0.05 TCGA-G4-6320-01 16 53487391 53487392 AT C RBL2 Frame_Shift_Del p.D265Afs*22 0.16 TCGA-G4-6320-01 16 55794524 55794524 G T CES1P1 RNA 0.14 TCGA-G4-6320-01 16 56370728 56370728 G A GNAO1 Missense_Mutation p.A227T 0.14 deleterious(0.02) probably_damaging(0.939) TCGA-G4-6320-01 16 56388797 56388797 C T RP11-441F2.5 5'Flank 0.18 TCGA-G4-6320-01 16 56914060 56914060 C T SLC12A3 Silent p.L488L 0.17 TCGA-G4-6320-01 16 56924263 56924263 C T SLC12A3 Missense_Mutation p.A788V 0.18 tolerated(0.19) benign(0.011) TCGA-G4-6320-01 16 57059674 57059674 G A NLRC5 Silent p.P273P 0.19 TCGA-G4-6320-01 16 57794832 57794832 G A KIFC3 Missense_Mutation p.R680C 0.33 deleterious(0) probably_damaging(0.95) TCGA-G4-6320-01 16 58325032 58325032 C T PRSS54 Missense_Mutation p.V32I 0.45 tolerated(1) benign(0) TCGA-G4-6320-01 16 58438678 58438678 G A GINS3 3'UTR 0.20 TCGA-G4-6320-01 16 66655964 66655964 C T CMTM4 Splice_Site p.X208_splice 0.24 TCGA-G4-6320-01 16 67006937 67006937 C T CES3 Silent p.A567A 0.13 TCGA-G4-6320-01 16 67298985 67298985 C T SLC9A5 Nonsense_Mutation p.R686* 0.18 TCGA-G4-6320-01 16 67322783 67322783 T C PLEKHG4 3'UTR 0.10 TCGA-G4-6320-01 16 67416055 67416055 C T LRRC36 Silent p.N650N 0.30 TCGA-G4-6320-01 16 67580399 67580399 C - FAM65A 3'UTR 0.20 TCGA-G4-6320-01 16 67943557 67943557 G A PSKH1 Missense_Mutation p.R302H 0.24 tolerated(0.62) probably_damaging(0.998) TCGA-G4-6320-01 16 68026418 68026418 C T DPEP2 Missense_Mutation p.A129T 0.16 deleterious(0.02) possibly_damaging(0.73) TCGA-G4-6320-01 16 68225007 68225007 A G NFATC3 Missense_Mutation p.N812S 0.25 tolerated_low_confidence(0.2) probably_damaging(0.995) TCGA-G4-6320-01 16 68331155 68331155 C - SLC7A6 Frame_Shift_Del p.Q492Sfs*8 0.19 TCGA-G4-6320-01 16 69358113 69358113 G A VPS4A Silent p.S405S 0.17 TCGA-G4-6320-01 16 70517785 70517785 C T COG4 Missense_Mutation p.V600M 0.17 deleterious(0.01) possibly_damaging(0.896) TCGA-G4-6320-01 16 74368885 74368885 C T RP11-252A24.2 3'Flank 0.10 TCGA-G4-6320-01 16 74447537 74447537 C T CLEC18B Missense_Mutation p.R165Q 0.11 tolerated(0.37) benign(0.009) TCGA-G4-6320-01 16 74657772 74657772 C T RFWD3 3'UTR 0.20 TCGA-G4-6320-01 16 81142296 81142296 G T RNU6-1191P 5'Flank 0.40 TCGA-G4-6320-01 16 81739122 81739122 C T CMIP Missense_Mutation p.R704W 0.18 deleterious(0.01) probably_damaging(0.919) TCGA-G4-6320-01 16 81888101 81888101 C T PLCG2 Silent p.F82F 0.24 TCGA-G4-6320-01 16 837382 837382 C A RPUSD1 Missense_Mutation p.R93L 0.22 deleterious(0) probably_damaging(0.996) TCGA-G4-6320-01 16 88677887 88677889 AGA - ZC3H18 In_Frame_Del p.K474del 0.20 TCGA-G4-6320-01 16 88706445 88706445 G A IL17C Missense_Mutation p.V187I 0.18 deleterious(0.03) possibly_damaging(0.479) TCGA-G4-6320-01 16 88712543 88712543 G A CYBA Missense_Mutation p.A117V 0.22 deleterious(0) probably_damaging(0.987) TCGA-G4-6320-01 16 88718937 88718937 G A MVD Missense_Mutation p.A400V 0.23 deleterious(0) possibly_damaging(0.817) TCGA-G4-6320-01 16 88779745 88779745 C T CTU2 Nonsense_Mutation p.R255* 0.21 TCGA-G4-6320-01 16 88958674 88958674 C T CBFA2T3 Missense_Mutation p.R200H 0.14 tolerated(0.06) benign(0.241) TCGA-G4-6320-01 16 89623635 89623635 T A SPG7 3'UTR 0.25 TCGA-G4-6320-01 16 89657645 89657645 G A CPNE7 Missense_Mutation p.E502K 0.30 tolerated(0.25) possibly_damaging(0.612) TCGA-G4-6320-01 16 89851308 89851308 G A FANCA Missense_Mutation p.T475M 0.46 deleterious(0) possibly_damaging(0.791) TCGA-G4-6320-01 16 90161593 90161593 C T TUBB8P7 RNA 0.09 TCGA-G4-6320-01 17 1198880 1198880 C T TUSC5 Silent p.I161I 0.19 TCGA-G4-6320-01 17 1563231 1563231 C T PRPF8 Missense_Mutation p.R1617Q 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-G4-6320-01 17 18923700 18923700 C A SLC5A10 Missense_Mutation p.L599I 0.22 tolerated(0.61) benign(0.019) TCGA-G4-6320-01 17 19318410 19318410 G C RNF112 Missense_Mutation p.A396P 0.24 deleterious(0) probably_damaging(0.977) TCGA-G4-6320-01 17 20407202 20407202 A G RP11-434D2.7 3'Flank 0.17 TCGA-G4-6320-01 17 20799104 20799104 C T CCDC144NL Missense_Mutation p.R77H 0.21 tolerated_low_confidence(0.15) benign(0.011) TCGA-G4-6320-01 17 21320356 21320356 C A KCNJ12 3'UTR 0.08 TCGA-G4-6320-01 17 21438615 21438615 G A C17orf51 Silent p.S204S 0.19 TCGA-G4-6320-01 17 26959235 26959235 C T KIAA0100 Silent p.L1276L 0.26 TCGA-G4-6320-01 17 27041530 27041530 A G RAB34 3'UTR 0.18 TCGA-G4-6320-01 17 28269278 28269279 AG - EFCAB5 Frame_Shift_Del p.R23Efs*6 0.22 TCGA-G4-6320-01 17 292954 292954 G A FAM101B 3'UTR 0.36 TCGA-G4-6320-01 17 32957094 32957094 C T TMEM132E Missense_Mutation p.A379V 0.14 deleterious(0.04) benign(0.158) TCGA-G4-6320-01 17 33343447 33343447 C T RFFL Nonsense_Mutation p.W276* 0.23 TCGA-G4-6320-01 17 33849654 33849654 C T SLFN12L 5'UTR 0.19 TCGA-G4-6320-01 17 35297605 35297605 C T LHX1 Silent p.C63C 0.29 TCGA-G4-6320-01 17 3628883 3628883 C T GSG2 Missense_Mutation p.R552C 0.20 tolerated(0.08) benign(0.284) TCGA-G4-6320-01 17 36490633 36490633 C T GPR179 Missense_Mutation p.A580T 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 17 36868165 36868165 G A MLLT6 Silent p.G206G 0.07 TCGA-G4-6320-01 17 36959062 36959062 C T CWC25 Missense_Mutation p.A352T 0.24 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 17 3807294 3807294 G A P2RX1 Missense_Mutation p.A151V 0.08 tolerated(0.25) benign(0.152) TCGA-G4-6320-01 17 38904460 38904460 T C KRT25 3'UTR 0.27 TCGA-G4-6320-01 17 39551859 39551859 C T KRT31 Missense_Mutation p.R202H 0.20 deleterious(0.02) probably_damaging(0.954) TCGA-G4-6320-01 17 40253856 40253856 G T DHX58 Missense_Mutation p.R654S 0.18 tolerated(0.27) benign(0.031) TCGA-G4-6320-01 17 40323848 40323848 G A KCNH4 Missense_Mutation p.R385C 0.15 deleterious(0) benign(0.362) TCGA-G4-6320-01 17 40362446 40362447 - T STAT5B Frame_Shift_Ins p.H584Tfs*8 0.19 TCGA-G4-6320-01 17 40459723 40459723 G A STAT5A Missense_Mutation p.A630T 0.27 deleterious(0) possibly_damaging(0.872) TCGA-G4-6320-01 17 4076668 4076668 C T ANKFY1 Missense_Mutation p.A1041T 0.15 deleterious(0) probably_damaging(0.996) TCGA-G4-6320-01 17 41165317 41165317 C T IFI35 Missense_Mutation p.T101M 0.11 tolerated(0.2) benign(0.045) TCGA-G4-6320-01 17 42255145 42255145 C A ASB16 Intron 0.16 TCGA-G4-6320-01 17 42433210 42433210 C A FAM171A2 Splice_Site p.X299_splice 0.16 TCGA-G4-6320-01 17 42460974 42460974 C T ITGA2B Missense_Mutation p.R366Q 0.20 tolerated(0.18) benign(0.002) TCGA-G4-6320-01 17 42854905 42854905 G - ADAM11 Frame_Shift_Del p.D614Tfs*33 0.16 TCGA-G4-6320-01 17 42942372 42942372 G A EFTUD2 Missense_Mutation p.T404M 0.06 deleterious(0.01) possibly_damaging(0.832) TCGA-G4-6320-01 17 4457498 4457498 C G MYBBP1A Missense_Mutation p.V124L 0.25 tolerated(0.05) benign(0.105) TCGA-G4-6320-01 17 45773355 45773355 C T TBKBP1 5'UTR 0.30 TCGA-G4-6320-01 17 46103842 46103842 C A COPZ2 Splice_Site p.X194_splice 0.40 TCGA-G4-6320-01 17 46148811 46148811 C A CBX1 Missense_Mutation p.D182Y 0.23 deleterious(0) possibly_damaging(0.459) TCGA-G4-6320-01 17 46190702 46190702 C T SNX11 Missense_Mutation p.R57W 0.13 deleterious(0.01) probably_damaging(1) TCGA-G4-6320-01 17 46620569 46620569 G A HOXB2 Missense_Mutation p.A311V 0.23 deleterious(0.01) benign(0.408) TCGA-G4-6320-01 17 4722779 4722779 C T PLD2 Silent p.A788A 0.14 TCGA-G4-6320-01 17 47587820 47587820 G A NGFR Silent p.S205S 0.28 TCGA-G4-6320-01 17 4794868 4794868 G A MINK1 Missense_Mutation p.D620N 0.08 tolerated(0.13) benign(0.211) TCGA-G4-6320-01 17 48213398 48213398 C T PPP1R9B Silent p.A744A 0.21 TCGA-G4-6320-01 17 48273330 48273330 G A COL1A1 Missense_Mutation p.T337I 0.09 unknown(0) TCGA-G4-6320-01 17 4842149 4842149 C T SLC25A11 Missense_Mutation p.V124M 0.31 tolerated(0.26) benign(0.008) TCGA-G4-6320-01 17 48433896 48433896 G A XYLT2 Missense_Mutation p.A503T 0.08 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 17 4847913 4847913 G A RNF167 Missense_Mutation p.R244Q 0.24 deleterious(0.03) probably_damaging(0.988) TCGA-G4-6320-01 17 48768633 48768633 G A ABCC3 3'UTR 0.22 TCGA-G4-6320-01 17 4999431 4999431 G A ZFP3 3'UTR 0.29 TCGA-G4-6320-01 17 5424908 5424908 C T NLRP1 Missense_Mutation p.R1240H 0.26 tolerated(1) benign(0.016) TCGA-G4-6320-01 17 54428135 54428135 G A ANKFN1 Missense_Mutation p.R69H 0.25 tolerated_low_confidence(0.44) benign(0) TCGA-G4-6320-01 17 54872538 54872538 A G C17orf67 Missense_Mutation p.Y54H 0.08 tolerated(0.43) benign(0.067) TCGA-G4-6320-01 17 55075812 55075812 C T SCPEP1 Missense_Mutation p.P316L 0.13 tolerated(0.1) benign(0.128) TCGA-G4-6320-01 17 55123549 55123549 G A RNF126P1 RNA 0.25 TCGA-G4-6320-01 17 56573468 56573470 GAG - MTMR4 In_Frame_Del p.P678del 0.22 TCGA-G4-6320-01 17 59482911 59482911 G A TBX2 Missense_Mutation p.G467D 0.18 tolerated(0.06) benign(0.326) TCGA-G4-6320-01 17 59560597 59560597 C T TBX4 Missense_Mutation p.P453L 0.25 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 17 60769823 60769823 G A MRC2 3'UTR 0.21 TCGA-G4-6320-01 17 62020390 62020390 G T SCN4A Missense_Mutation p.L1362I 0.22 deleterious(0) possibly_damaging(0.844) TCGA-G4-6320-01 17 6380384 6380384 G A PITPNM3 Silent p.C350C 0.07 TCGA-G4-6320-01 17 67003946 67003946 C T ABCA9 Missense_Mutation p.R1130H 0.24 tolerated(0.12) benign(0.344) TCGA-G4-6320-01 17 67102193 67102193 C T ABCA6 Missense_Mutation p.R850H 0.49 tolerated(1) benign(0.017) TCGA-G4-6320-01 17 68172524 68172524 A - KCNJ2 3'UTR 0.24 TCGA-G4-6320-01 17 6930301 6930301 C T BCL6B Silent p.H406H 0.18 TCGA-G4-6320-01 17 6982121 6982121 G A CLEC10A Missense_Mutation p.T4M 0.23 deleterious(0.03) possibly_damaging(0.513) TCGA-G4-6320-01 17 7100159 7100159 C T DLG4 Missense_Mutation p.E377K 0.25 deleterious(0) probably_damaging(0.943) TCGA-G4-6320-01 17 722707 722707 C T NXN Silent p.S264S 0.81 TCGA-G4-6320-01 17 7245641 7245641 C T ACAP1 Silent p.S93S 0.28 TCGA-G4-6320-01 17 73498369 73498369 G A CASKIN2 Missense_Mutation p.T929M 0.28 deleterious(0) probably_damaging(0.985) TCGA-G4-6320-01 17 73501069 73501069 G - CASKIN2 Frame_Shift_Del p.P339Rfs*95 0.24 TCGA-G4-6320-01 17 73625496 73625496 G A RECQL5 Silent p.A669A 0.25 TCGA-G4-6320-01 17 73735786 73735786 G A ITGB4 Missense_Mutation p.G752S 0.10 deleterious(0) probably_damaging(0.945) TCGA-G4-6320-01 17 73739802 73739802 G A ITGB4 Missense_Mutation p.V991M 0.20 tolerated(0.06) benign(0.097) TCGA-G4-6320-01 17 73820417 73820417 C T UNK Silent p.H784H 0.42 TCGA-G4-6320-01 17 74076076 74076076 G A ZACN Splice_Site p.X125_splice 0.16 TCGA-G4-6320-01 17 74464936 74464936 G A AANAT Silent p.E81E 0.18 TCGA-G4-6320-01 17 74570497 74570497 C T ST6GALNAC2 Missense_Mutation p.R104H 0.13 benign(0.015) TCGA-G4-6320-01 17 75189626 75189626 A - SEC14L1 Frame_Shift_Del p.G159Efs*12 0.15 TCGA-G4-6320-01 17 7559167 7559167 A G ATP1B2 Missense_Mutation p.K276R 0.09 tolerated(0.2) probably_damaging(0.997) TCGA-G4-6320-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 17 76447584 76447584 C A DNAH17 Silent p.V3553V 0.47 TCGA-G4-6320-01 17 76455167 76455167 C T DNAH17 Silent p.A3245A 0.29 TCGA-G4-6320-01 17 7696081 7696081 G A DNAH2 Missense_Mutation p.V2418M 0.27 probably_damaging(1) TCGA-G4-6320-01 17 7736238 7736238 C - DNAH2 Frame_Shift_Del p.K4326Rfs*84 0.25 TCGA-G4-6320-01 17 7797863 7797863 C A CHD3 Missense_Mutation p.H461Q 0.26 possibly_damaging(0.537) TCGA-G4-6320-01 17 79205420 79205420 C T ENTHD2 Missense_Mutation p.R258H 0.25 tolerated(0.2) benign(0.006) TCGA-G4-6320-01 17 79609400 79609400 C T TSPAN10 5'UTR 0.27 TCGA-G4-6320-01 17 79615030 79615030 C T TSPAN10 Silent p.C258C 0.18 TCGA-G4-6320-01 17 7976266 7976266 C T ALOX12B Silent p.R643R 0.34 TCGA-G4-6320-01 17 79954349 79954349 C T ASPSCR1 Missense_Mutation p.S187L 0.20 tolerated(0.49) unknown(0) TCGA-G4-6320-01 17 80042523 80042523 C T FASN Missense_Mutation p.R1545H 0.20 tolerated(0.1) benign(0.008) TCGA-G4-6320-01 17 80282562 80282562 G A SECTM1 Missense_Mutation p.A100V 0.23 deleterious(0) probably_damaging(0.931) TCGA-G4-6320-01 17 8050275 8050275 G T PER1 Missense_Mutation p.Q559K 0.31 tolerated(0.41) benign(0.358) TCGA-G4-6320-01 17 80900419 80900419 G A TBCD 3'UTR 0.23 TCGA-G4-6320-01 17 8732057 8732057 G A PIK3R6 Silent p.D380D 0.27 TCGA-G4-6320-01 18 13612656 13612657 - G LDLRAD4 Intron 0.35 TCGA-G4-6320-01 18 13645164 13645164 G A LDLRAD4 Silent p.A143A 0.20 TCGA-G4-6320-01 18 18539859 18539859 A G ROCK1 Missense_Mutation p.F1152L 0.23 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 18 21649231 21649231 G T TTC39C Missense_Mutation p.L152F 0.11 deleterious(0.03) benign(0.254) TCGA-G4-6320-01 18 2925232 2925234 GAG - LPIN2 In_Frame_Del p.S643del 0.22 TCGA-G4-6320-01 18 3067369 3067369 T C MYOM1 Missense_Mutation p.N1650S 0.28 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 18 43496129 43496129 C T EPG5 Missense_Mutation p.V1143I 0.06 tolerated(0.14) possibly_damaging(0.899) TCGA-G4-6320-01 18 44560341 44560341 G T TCEB3B Missense_Mutation p.P432H 0.06 deleterious(0.04) probably_damaging(0.995) TCGA-G4-6320-01 18 580997 580997 G A CETN1 3'UTR 0.21 TCGA-G4-6320-01 18 61323094 61323094 C T SERPINB3 Missense_Mutation p.V324M 0.41 tolerated(0.28) benign(0.016) TCGA-G4-6320-01 18 706546 706546 G A ENOSF1 Silent p.V60V 0.12 TCGA-G4-6320-01 18 72776025 72776025 C T ZNF407 Silent p.V2116V 0.18 TCGA-G4-6320-01 18 756699 756699 C T YES1 Silent p.P43P 0.22 TCGA-G4-6320-01 18 76753205 76753205 C A SALL3 Nonsense_Mutation p.S405* 0.24 TCGA-G4-6320-01 18 77733733 77733733 G A TXNL4A Silent p.R127R 0.24 TCGA-G4-6320-01 19 1007861 1007861 C - GRIN3B Frame_Shift_Del p.K738Sfs*25 0.29 TCGA-G4-6320-01 19 1051990 1051990 G A ABCA7 Silent p.L1004L 0.16 TCGA-G4-6320-01 19 1056170 1056170 C T ABCA7 Silent p.G1448G 0.20 TCGA-G4-6320-01 19 10687918 10687918 C T AP1M2 Missense_Mutation p.V335M 0.20 tolerated(0.13) benign(0.026) TCGA-G4-6320-01 19 1111551 1111551 C T SBNO2 Silent p.V921V 0.20 TCGA-G4-6320-01 19 11289357 11289357 G A KANK2 Missense_Mutation p.P430L 0.13 tolerated(0.41) benign(0.002) TCGA-G4-6320-01 19 11311419 11311419 C T DOCK6 Missense_Mutation p.R1971Q 0.12 deleterious(0) probably_damaging(0.972) TCGA-G4-6320-01 19 11327636 11327636 C T DOCK6 Missense_Mutation p.R1283H 0.15 tolerated(0.07) benign(0.372) TCGA-G4-6320-01 19 11350381 11350381 C T C19orf80 Missense_Mutation p.P23L 0.20 deleterious(0) possibly_damaging(0.868) TCGA-G4-6320-01 19 11537514 11537514 C T CCDC151 Missense_Mutation p.A235T 0.05 tolerated(0.11) benign(0.111) TCGA-G4-6320-01 19 11624896 11624896 C T ECSIT Silent p.A79A 0.24 TCGA-G4-6320-01 19 12501974 12501974 T C ZNF799 Missense_Mutation p.K413R 0.14 tolerated(1) benign(0.003) TCGA-G4-6320-01 19 12542550 12542552 GTT - ZNF443 In_Frame_Del p.Q145del 0.15 TCGA-G4-6320-01 19 13039185 13039185 C T FARSA Missense_Mutation p.R271H 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 19 13210048 13210048 T C LYL1 3'UTR 0.17 TCGA-G4-6320-01 19 13428092 13428092 C T CACNA1A Silent p.E463E 0.22 TCGA-G4-6320-01 19 1387822 1387822 G A NDUFS7 Missense_Mutation p.R10H 0.18 tolerated_low_confidence(0.14) benign(0.183) TCGA-G4-6320-01 19 14001072 14001072 C T C19orf57 Silent p.T199T 0.27 TCGA-G4-6320-01 19 14031668 14031668 G A CC2D1A Missense_Mutation p.R525H 0.19 deleterious(0) probably_damaging(0.983) TCGA-G4-6320-01 19 14164476 14164476 C T PALM3 Missense_Mutation p.E655K 0.14 deleterious(0) probably_damaging(0.994) TCGA-G4-6320-01 19 1453530 1453530 C T APC2 Silent p.H111H 0.34 TCGA-G4-6320-01 19 14561842 14561842 C T PKN1 Silent p.S303S 0.50 TCGA-G4-6320-01 19 1466991 1466991 C T APC2 Silent p.L1231L 0.30 TCGA-G4-6320-01 19 14991924 14991924 G A OR7A17 Missense_Mutation p.L82F 0.12 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-G4-6320-01 19 15338353 15338353 G A EPHX3 Silent p.R326R 0.31 TCGA-G4-6320-01 19 1556843 1556843 G A MEX3D Silent p.I225I 0.22 TCGA-G4-6320-01 19 1581219 1581219 G A MBD3 Silent p.S183S 0.10 TCGA-G4-6320-01 19 15852399 15852399 C T OR10H3 Missense_Mutation p.A66V 0.11 tolerated(0.41) benign(0.008) TCGA-G4-6320-01 19 17487748 17487748 C T PLVAP Missense_Mutation p.R117H 0.12 deleterious(0.01) probably_damaging(0.965) TCGA-G4-6320-01 19 17598115 17598115 T C SLC27A1 Missense_Mutation p.L232S 0.18 tolerated(0.23) benign(0.012) TCGA-G4-6320-01 19 17838556 17838556 G A MAP1S Missense_Mutation p.S788N 0.16 deleterious(0) probably_damaging(0.986) TCGA-G4-6320-01 19 1790799 1790799 G T ATP8B3 Missense_Mutation p.L779M 0.07 tolerated(0.36) probably_damaging(0.983) TCGA-G4-6320-01 19 1806680 1806680 G A ATP8B3 Silent p.H208H 0.24 TCGA-G4-6320-01 19 18376293 18376293 G - KIAA1683 Frame_Shift_Del p.P686Rfs*2 0.21 TCGA-G4-6320-01 19 18376973 18376973 C T KIAA1683 Silent p.P459P 0.19 TCGA-G4-6320-01 19 18572539 18572539 C A ELL Missense_Mutation p.G198V 0.23 deleterious(0.01) probably_damaging(0.938) TCGA-G4-6320-01 19 18632857 18632857 C T ELL Silent p.A3A 0.30 TCGA-G4-6320-01 19 18704185 18704185 C A CRLF1 3'UTR 0.69 TCGA-G4-6320-01 19 18729019 18729019 G A TMEM59L Missense_Mutation p.S240N 0.13 tolerated(0.47) benign(0.022) TCGA-G4-6320-01 19 18898367 18898367 G A COMP Silent p.N356N 0.13 TCGA-G4-6320-01 19 19105283 19105283 C T SUGP2 Silent p.S1047S 0.23 TCGA-G4-6320-01 19 19379456 19379456 G A TM6SF2 Missense_Mutation p.R198C 0.24 tolerated(0.24) benign(0) TCGA-G4-6320-01 19 20003557 20003557 T - ZNF253 3'UTR 0.25 TCGA-G4-6320-01 19 21132245 21132245 A G ZNF85 Missense_Mutation p.T309A 0.18 tolerated(0.12) benign(0.007) TCGA-G4-6320-01 19 21948568 21948568 C T ZNF100 Missense_Mutation p.M8I 0.23 tolerated_low_confidence(0.32) benign(0.001) TCGA-G4-6320-01 19 21991304 21991304 C A ZNF43 Missense_Mutation p.C512F 0.39 deleterious(0) benign(0.004) TCGA-G4-6320-01 19 22362534 22362534 G A ZNF676 3'UTR 0.16 TCGA-G4-6320-01 19 2337496 2337496 C T SPPL2B RNA 0.21 TCGA-G4-6320-01 19 2353157 2353157 C T LLfos-48D6.1 Intron 0.19 TCGA-G4-6320-01 19 24309377 24309377 G A ZNF254 Missense_Mutation p.C192Y 0.22 tolerated(0.58) benign(0.007) TCGA-G4-6320-01 19 2717735 2717735 C A DIRAS1 Missense_Mutation p.V24L 0.21 tolerated(0.06) possibly_damaging(0.769) TCGA-G4-6320-01 19 30936018 30936018 C T ZNF536 Missense_Mutation p.P517S 0.20 tolerated(0.28) probably_damaging(0.998) TCGA-G4-6320-01 19 3162950 3162950 G A GNA15 Missense_Mutation p.R353H 0.32 deleterious(0.04) probably_damaging(0.937) TCGA-G4-6320-01 19 33390783 33390783 G A CEP89 Missense_Mutation p.R619C 0.20 deleterious(0) possibly_damaging(0.819) TCGA-G4-6320-01 19 34838845 34838845 G A KIAA0355 Missense_Mutation p.R862Q 0.27 deleterious_low_confidence(0.01) benign(0.185) TCGA-G4-6320-01 19 34960032 34960032 G A UBA2 Missense_Mutation p.R610H 0.25 tolerated(0.07) benign(0.007) TCGA-G4-6320-01 19 35435665 35435665 A - ZNF30 Frame_Shift_Del p.K601Nfs*16 0.16 TCGA-G4-6320-01 19 3544687 3544687 G T MFSD12 Intron 0.16 TCGA-G4-6320-01 19 35625598 35625598 C A LGI4 5'UTR 0.20 TCGA-G4-6320-01 19 35719091 35719091 A G FAM187B Missense_Mutation p.Y165H 0.19 deleterious(0) probably_damaging(0.993) TCGA-G4-6320-01 19 3595880 3595880 C T TBXA2R Missense_Mutation p.G280R 0.33 tolerated(0.06) possibly_damaging(0.882) TCGA-G4-6320-01 19 36169101 36169101 C T UPK1A 3'UTR 0.21 TCGA-G4-6320-01 19 36229283 36229283 A G KMT2B Missense_Mutation p.N2658S 0.19 probably_damaging(0.963) TCGA-G4-6320-01 19 3644121 3644121 G A PIP5K1C Missense_Mutation p.R492W 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 19 37038617 37038617 G A ZNF529 Silent p.H281H 0.14 TCGA-G4-6320-01 19 37677834 37677834 A G ZNF585B Missense_Mutation p.F202S 0.27 tolerated(0.51) benign(0.027) TCGA-G4-6320-01 19 3834980 3834980 C T ZFR2 Missense_Mutation p.A19T 0.24 tolerated(1) benign(0.184) TCGA-G4-6320-01 19 38384255 38384255 C T WDR87 Silent p.L657L 0.18 TCGA-G4-6320-01 19 39087052 39087052 A G MAP4K1 Silent p.A672A 0.15 TCGA-G4-6320-01 19 39198787 39198787 G A ACTN4 Silent p.L201L 0.15 TCGA-G4-6320-01 19 39227900 39227900 G A CAPN12 Missense_Mutation p.R420C 0.30 deleterious(0.01) probably_damaging(0.977) TCGA-G4-6320-01 19 39360272 39360272 G A RINL Missense_Mutation p.T472M 0.27 tolerated(0.31) probably_damaging(0.956) TCGA-G4-6320-01 19 39989592 39989592 C T DLL3 5'Flank 0.27 TCGA-G4-6320-01 19 40317941 40317941 G A DYRK1B Missense_Mutation p.T360M 0.14 tolerated(0.22) possibly_damaging(0.479) TCGA-G4-6320-01 19 40320884 40320884 C T DYRK1B Intron 0.18 TCGA-G4-6320-01 19 4037479 4037479 C T PIAS4 Missense_Mutation p.P417L 0.25 deleterious(0) possibly_damaging(0.45) TCGA-G4-6320-01 19 4037804 4037804 C G PIAS4 Missense_Mutation p.D488E 0.13 tolerated_low_confidence(0.62) benign(0.001) TCGA-G4-6320-01 19 40386760 40386760 G A FCGBP Missense_Mutation p.R2852W 0.18 probably_damaging(0.96) TCGA-G4-6320-01 19 408298 408298 G A C2CD4C Missense_Mutation p.R22W 0.05 deleterious(0.04) possibly_damaging(0.846) TCGA-G4-6320-01 19 41081465 41081465 G A SPTBN4 Missense_Mutation p.R2562H 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.522) TCGA-G4-6320-01 19 41798279 41798279 T C HNRNPUL1 Missense_Mutation p.C377R 0.17 deleterious(0) unknown(0) TCGA-G4-6320-01 19 41942305 41942305 G A ATP5SL Silent p.G102G 0.17 TCGA-G4-6320-01 19 42482336 42482336 G A ATP1A3 Silent p.D604D 0.05 TCGA-G4-6320-01 19 42489533 42489533 G A ATP1A3 Missense_Mutation p.R230C 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 19 42492717 42492717 G A ATP1A3 Nonsense_Mutation p.Q15* 0.15 TCGA-G4-6320-01 19 42813992 42813992 G A PRR19 Missense_Mutation p.V86I 0.14 tolerated(0.17) probably_damaging(0.994) TCGA-G4-6320-01 19 42856466 42856466 G A MEGF8 Missense_Mutation p.A1003T 0.20 deleterious(0.02) benign(0.269) TCGA-G4-6320-01 19 43358133 43358133 C A PSG10P RNA 0.16 TCGA-G4-6320-01 19 43965644 43965644 G A LYPD3 Silent p.A300A 0.19 TCGA-G4-6320-01 19 44661652 44661652 C T ZNF234 Missense_Mutation p.R495C 0.18 deleterious(0.02) probably_damaging(1) TCGA-G4-6320-01 19 4504927 4504927 C T PLIN4 Silent p.Q1231Q 0.17 TCGA-G4-6320-01 19 4510928 4510928 C - PLIN4 Frame_Shift_Del p.G1001Afs*9 0.16 TCGA-G4-6320-01 19 45211179 45211179 G A CEACAM16 Silent p.T329T 0.20 TCGA-G4-6320-01 19 45260389 45260389 C T BCL3 Missense_Mutation p.A212V 0.36 deleterious(0) probably_damaging(0.976) TCGA-G4-6320-01 19 45448131 45448131 G A APOC4 Missense_Mutation p.G68R 0.19 tolerated(1) benign(0) TCGA-G4-6320-01 19 45774951 45774951 C T MARK4 Silent p.D257D 0.28 TCGA-G4-6320-01 19 46128002 46128002 C A EML2 Silent p.G473G 0.14 TCGA-G4-6320-01 19 46173893 46173893 A T GIPR Missense_Mutation p.T25S 0.11 tolerated(0.23) benign(0.08) TCGA-G4-6320-01 19 46351073 46351073 G A SYMPK Nonsense_Mutation p.R205* 0.15 TCGA-G4-6320-01 19 4652516 4652516 T - TNFAIP8L1 3'UTR 0.18 TCGA-G4-6320-01 19 46842865 46842865 G A HIF3A Missense_Mutation p.A666T 0.12 deleterious_low_confidence(0.04) benign(0.008) TCGA-G4-6320-01 19 47197286 47197286 G T PRKD2 Silent p.A474A 0.08 TCGA-G4-6320-01 19 47995317 47995319 GAA - NAPA In_Frame_Del p.F207del 0.15 TCGA-G4-6320-01 19 48197451 48197451 G T GLTSCR1 Missense_Mutation p.S788I 0.21 unknown(0) TCGA-G4-6320-01 19 48833555 48833555 C T EMP3 Intron 0.18 TCGA-G4-6320-01 19 48953993 48953993 C T GRWD1 Silent p.H251H 0.29 TCGA-G4-6320-01 19 49148872 49148872 A G CA11 Silent p.R6R 0.14 TCGA-G4-6320-01 19 49208987 49208987 T - FUT2 3'UTR 0.11 TCGA-G4-6320-01 19 4960773 4960773 G A UHRF1 RNA 0.15 TCGA-G4-6320-01 19 49933804 49933804 C A SLC17A7 Missense_Mutation p.R552M 0.32 deleterious_low_confidence(0.05) possibly_damaging(0.831) TCGA-G4-6320-01 19 49937028 49937028 G A SLC17A7 Silent p.I274I 0.16 TCGA-G4-6320-01 19 49993109 49993109 C T RPL13A Silent p.V6V 0.06 TCGA-G4-6320-01 19 50098971 50098971 G A PRR12 Missense_Mutation p.G460E 0.23 probably_damaging(0.969) TCGA-G4-6320-01 19 50213683 50213683 G A CPT1C Missense_Mutation p.R558H 0.05 deleterious(0.04) benign(0.007) TCGA-G4-6320-01 19 51650048 51650048 G A SIGLEC7 Silent p.A355A 0.21 TCGA-G4-6320-01 19 51826942 51826942 G A IGLON5 Missense_Mutation p.R62H 0.19 tolerated(0.36) benign(0.206) TCGA-G4-6320-01 19 51958903 51958903 G A SIGLEC8 Missense_Mutation p.L274F 0.19 tolerated(0.24) possibly_damaging(0.748) TCGA-G4-6320-01 19 52001472 52001472 G A SIGLEC12 Missense_Mutation p.A402V 0.13 tolerated(0.6) possibly_damaging(0.679) TCGA-G4-6320-01 19 52023117 52023117 G T SIGLEC6 3'UTR 0.38 TCGA-G4-6320-01 19 52034696 52034696 C T SIGLEC6 Missense_Mutation p.V49I 0.22 deleterious(0.03) possibly_damaging(0.606) TCGA-G4-6320-01 19 5231449 5231449 G - PTPRS Frame_Shift_Del p.P676Rfs*134 0.18 TCGA-G4-6320-01 19 53050820 53050820 T G ZNF808 Missense_Mutation p.F40C 0.10 tolerated(1) benign(0.001) TCGA-G4-6320-01 19 53050831 53050831 G T ZNF808 Missense_Mutation p.A44S 0.10 tolerated(0.06) benign(0.005) TCGA-G4-6320-01 19 53855172 53855172 A G ZNF845 Missense_Mutation p.D415G 0.14 deleterious(0.01) possibly_damaging(0.782) TCGA-G4-6320-01 19 54376825 54376825 G A MYADM Silent p.T14T 0.13 TCGA-G4-6320-01 19 5456550 5456550 G A ZNRF4 Missense_Mutation p.V350M 0.19 tolerated(0.07) benign(0.256) TCGA-G4-6320-01 19 55444995 55444995 C T NLRP7 Missense_Mutation p.G862R 0.17 deleterious(0) probably_damaging(0.997) TCGA-G4-6320-01 19 55602874 55602874 G A PPP1R12C Missense_Mutation p.A772V 0.14 deleterious(0) probably_damaging(0.986) TCGA-G4-6320-01 19 56226431 56226431 G A NLRP9 Missense_Mutation p.R831W 0.17 deleterious(0) benign(0.28) TCGA-G4-6320-01 19 56465975 56465975 G T NLRP8 Missense_Mutation p.R184M 0.19 deleterious(0.01) possibly_damaging(0.747) TCGA-G4-6320-01 19 57670617 57670617 G A DUXA Silent p.H70H 0.17 TCGA-G4-6320-01 19 5785729 5785729 G A DUS3L Missense_Mutation p.R546C 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 19 58111402 58111402 G A ZNF530 5'UTR 0.23 TCGA-G4-6320-01 19 58371213 58371213 G A ZNF587 Missense_Mutation p.S478N 0.18 tolerated(0.53) benign(0.053) TCGA-G4-6320-01 19 58420460 58420460 C T ZNF417 Missense_Mutation p.V396I 0.21 tolerated(1) benign(0.01) TCGA-G4-6320-01 19 58439270 58439270 G C ZNF418 Missense_Mutation p.D93E 0.12 deleterious(0.03) benign(0.028) TCGA-G4-6320-01 19 58549531 58549531 C T ZSCAN1 Silent p.A109A 0.26 TCGA-G4-6320-01 19 58864287 58864287 G A A1BG Intron 0.20 TCGA-G4-6320-01 19 59027882 59027882 C G ZBTB45 Missense_Mutation p.A387P 0.14 tolerated(0.15) benign(0.261) TCGA-G4-6320-01 19 59074866 59074866 C T MZF1 Missense_Mutation p.A260T 0.12 tolerated(0.57) benign(0.001) TCGA-G4-6320-01 19 5928036 5928036 T - RANBP3 Frame_Shift_Del p.D253Tfs*14 0.15 TCGA-G4-6320-01 19 622688 622688 C T POLRMT Missense_Mutation p.R507H 0.20 deleterious(0) possibly_damaging(0.901) TCGA-G4-6320-01 19 6416853 6416853 G C KHSRP Missense_Mutation p.P408R 0.16 tolerated(0.85) benign(0.068) TCGA-G4-6320-01 19 7975595 7975595 C T MAP2K7 Silent p.I194I 0.21 TCGA-G4-6320-01 19 804119 804119 C T PTBP1 Missense_Mutation p.P67S 0.12 deleterious(0.01) possibly_damaging(0.696) TCGA-G4-6320-01 19 814521 814521 G A LPPR3 Silent p.C276C 0.09 TCGA-G4-6320-01 19 8175782 8175782 C T FBN3 Missense_Mutation p.R1427H 0.15 tolerated(0.15) benign(0.127) TCGA-G4-6320-01 19 8212050 8212050 C T FBN3 Missense_Mutation p.R63Q 0.23 deleterious(0) probably_damaging(0.952) TCGA-G4-6320-01 19 9005646 9005646 G A MUC16 Nonsense_Mutation p.Q13254* 0.14 TCGA-G4-6320-01 19 9056948 9056948 A C MUC16 Silent p.T10166T 0.31 TCGA-G4-6320-01 19 9204578 9204578 C T OR1M1 Missense_Mutation p.R220C 0.11 tolerated(0.45) benign(0.011) TCGA-G4-6320-01 1 101704768 101704768 C T S1PR1 Silent p.F76F 0.05 TCGA-G4-6320-01 1 1026305 1026305 G - C1orf159 Intron 0.20 TCGA-G4-6320-01 1 10386184 10386184 C T KIF1B Silent p.H851H 0.07 TCGA-G4-6320-01 1 104114006 104114007 - A AMY2B Intron 0.20 TCGA-G4-6320-01 1 10713359 10713359 C T CASZ1 Intron 0.20 TCGA-G4-6320-01 1 107599497 107599497 G A PRMT6 Missense_Mutation p.V54I 0.07 tolerated(0.61) benign(0.002) TCGA-G4-6320-01 1 110022175 110022175 C - SYPL2 3'UTR 0.22 TCGA-G4-6320-01 1 110168968 110168968 G - AMPD2 Frame_Shift_Del p.G205Vfs*158 0.21 TCGA-G4-6320-01 1 11097820 11097820 G T MASP2 Missense_Mutation p.P313H 0.21 deleterious(0) probably_damaging(0.997) TCGA-G4-6320-01 1 112323406 112323406 C T KCND3 Missense_Mutation p.R426H 0.28 deleterious(0.05) possibly_damaging(0.522) TCGA-G4-6320-01 1 11273507 11273507 C T MTOR Missense_Mutation p.M1078I 0.27 tolerated(0.61) benign(0) TCGA-G4-6320-01 1 1139455 1139455 A G TNFRSF18 Intron 0.24 TCGA-G4-6320-01 1 114301304 114301304 C T PHTF1 Missense_Mutation p.A8T 0.14 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 1 11580853 11580853 G T PTCHD2 Silent p.L770L 0.27 TCGA-G4-6320-01 1 11584091 11584091 C T PTCHD2 Missense_Mutation p.R819W 0.13 deleterious(0) possibly_damaging(0.667) TCGA-G4-6320-01 1 11808635 11808635 G A AGTRAP Missense_Mutation p.R111Q 0.08 tolerated(0.13) benign(0.028) TCGA-G4-6320-01 1 11907448 11907448 C T NPPA Missense_Mutation p.V58M 0.41 tolerated(0.17) benign(0.013) TCGA-G4-6320-01 1 11982357 11982357 C T KIAA2013 Intron 0.36 TCGA-G4-6320-01 1 120906280 120906280 C T RP11-439A17.4 5'Flank 0.17 TCGA-G4-6320-01 1 144859831 144859831 G T PDE4DIP Missense_Mutation p.L2085I 0.09 tolerated(0.11) benign(0.364) TCGA-G4-6320-01 1 144903113 144903113 G A PDE4DIP Missense_Mutation p.R927C 0.17 tolerated(0.19) probably_damaging(1) TCGA-G4-6320-01 1 145474783 145474783 C T ANKRD34A Silent p.F485F 0.28 TCGA-G4-6320-01 1 145764956 145764956 T C GPR89A 3'UTR 0.19 TCGA-G4-6320-01 1 145787774 145787774 T C GPR89A Missense_Mutation p.M303V 0.17 deleterious(0.03) benign(0.098) TCGA-G4-6320-01 1 147095957 147095957 G - BCL9 Frame_Shift_Del p.Q1162Rfs*115 0.15 TCGA-G4-6320-01 1 149398942 149398942 G A HIST2H3PS2 3'Flank 0.21 TCGA-G4-6320-01 1 149895554 149895554 G A SF3B4 Silent p.Y385Y 0.16 TCGA-G4-6320-01 1 151149453 151149453 G A VPS72 Silent p.P265P 0.20 TCGA-G4-6320-01 1 152659420 152659420 C A LCE2B Missense_Mutation p.P34H 0.12 deleterious_low_confidence(0) unknown(0) TCGA-G4-6320-01 1 152733079 152733079 C - KPRP Frame_Shift_Del p.P340Hfs*31 0.21 TCGA-G4-6320-01 1 153905981 153905981 C T DENND4B Missense_Mutation p.R1103H 0.26 deleterious(0) probably_damaging(0.991) TCGA-G4-6320-01 1 153949734 153949734 G T JTB 5'UTR 0.46 TCGA-G4-6320-01 1 154144740 154144740 C T TPM3 Intron 0.13 TCGA-G4-6320-01 1 155104050 155104050 C T EFNA1 Missense_Mutation p.R110C 0.17 deleterious(0) probably_damaging(0.993) TCGA-G4-6320-01 1 155224572 155224572 C T FAM189B Missense_Mutation p.A33T 0.19 tolerated(0.14) probably_damaging(0.991) TCGA-G4-6320-01 1 155408676 155408676 C T ASH1L Missense_Mutation p.R1757Q 0.14 tolerated_low_confidence(0.09) probably_damaging(0.994) TCGA-G4-6320-01 1 155448771 155448771 C T ASH1L Missense_Mutation p.R1297H 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6320-01 1 155451073 155451073 G A ASH1L Missense_Mutation p.P530S 0.05 tolerated_low_confidence(0.11) benign(0.26) TCGA-G4-6320-01 1 155658010 155658012 GAG - YY1AP1 In_Frame_Del p.L82del 0.16 TCGA-G4-6320-01 1 155884185 155884186 - A KIAA0907 Intron 0.11 TCGA-G4-6320-01 1 156046736 156046736 C T MEX3A Missense_Mutation p.A398T 0.20 tolerated(0.89) benign(0.007) TCGA-G4-6320-01 1 156268834 156268834 G C VHLL Missense_Mutation p.N49K 0.24 deleterious(0.04) probably_damaging(0.928) TCGA-G4-6320-01 1 156828550 156828550 C A INSRR 5'UTR 0.23 TCGA-G4-6320-01 1 1572492 1572492 C T CDK11B Missense_Mutation p.R551H 0.14 unknown(0) TCGA-G4-6320-01 1 157666006 157666006 G A FCRL3 Missense_Mutation p.T319I 0.16 tolerated(0.07) probably_damaging(0.994) TCGA-G4-6320-01 1 157804207 157804207 G A CD5L Silent p.V236V 0.23 TCGA-G4-6320-01 1 158262540 158262540 T C CD1C Silent p.L255L 0.14 TCGA-G4-6320-01 1 158435387 158435387 C A OR10K1 Missense_Mutation p.F12L 0.18 deleterious(0.01) benign(0.303) TCGA-G4-6320-01 1 159827596 159827596 G T VSIG8 Silent p.S197S 0.16 TCGA-G4-6320-01 1 159897190 159897190 C T IGSF9 Missense_Mutation p.R1162Q 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.732) TCGA-G4-6320-01 1 160001575 160001575 T C PIGM 5'UTR 0.24 TCGA-G4-6320-01 1 160111134 160111134 G T ATP1A2 3'UTR 0.38 TCGA-G4-6320-01 1 161134028 161134028 G A USP21 Silent p.S431S 0.27 TCGA-G4-6320-01 1 16386064 16386064 G A FAM131C Silent p.L163L 0.29 TCGA-G4-6320-01 1 16817166 16817166 G A CROCCP3 RNA 0.25 TCGA-G4-6320-01 1 169562858 169562858 G A SELP Missense_Mutation p.R798C 0.14 deleterious(0.01) benign(0.239) TCGA-G4-6320-01 1 172278006 172278006 A C DNM3 Intron 0.27 TCGA-G4-6320-01 1 17279810 17279810 G A CROCC Missense_Mutation p.R1007Q 0.09 possibly_damaging(0.844) TCGA-G4-6320-01 1 17285115 17285115 G A CROCC Missense_Mutation p.R1301Q 0.07 benign(0.103) TCGA-G4-6320-01 1 173878913 173878913 G C SERPINC1 Missense_Mutation p.D310E 0.27 tolerated(0.12) probably_damaging(0.989) TCGA-G4-6320-01 1 175365879 175365879 G A TNR Silent p.D347D 0.16 TCGA-G4-6320-01 1 177199241 177199241 C T BRINP2 Missense_Mutation p.R77W 0.34 deleterious(0) probably_damaging(0.995) TCGA-G4-6320-01 1 177250630 177250630 C A BRINP2 Missense_Mutation p.P773H 0.17 tolerated(0.48) benign(0.43) TCGA-G4-6320-01 1 18014077 18014077 G A ARHGEF10L Missense_Mutation p.E1007K 0.05 deleterious(0.01) benign(0.012) TCGA-G4-6320-01 1 1849135 1849135 G A TMEM52 3'UTR 0.25 TCGA-G4-6320-01 1 18809548 18809548 C T KLHDC7A Silent p.A691A 0.26 TCGA-G4-6320-01 1 190250869 190250869 C T BRINP3 Missense_Mutation p.R83H 0.29 tolerated(0.1) benign(0.012) TCGA-G4-6320-01 1 19166261 19166261 G A TAS1R2 Silent p.S784S 0.08 TCGA-G4-6320-01 1 192779368 192779369 - A RGS2 Frame_Shift_Ins p.S64Kfs*12 0.17 TCGA-G4-6320-01 1 19595858 19595858 C T AKR7L Intron 0.21 TCGA-G4-6320-01 1 19609281 19609281 C T AKR7A3 Missense_Mutation p.A314T 0.18 tolerated(0.05) benign(0.425) TCGA-G4-6320-01 1 19653907 19653907 G A PQLC2 Splice_Site p.X268_splice 0.16 TCGA-G4-6320-01 1 201104894 201104894 G T TMEM9 Missense_Mutation p.A150E 0.20 deleterious(0.03) possibly_damaging(0.767) TCGA-G4-6320-01 1 201356038 201356038 G A LAD1 Missense_Mutation p.R151W 0.21 deleterious(0.02) benign(0.109) TCGA-G4-6320-01 1 204197332 204197332 G A PLEKHA6 Silent p.G970G 0.06 TCGA-G4-6320-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.22 TCGA-G4-6320-01 1 204937484 204937484 G A NFASC Missense_Mutation p.G272R 0.41 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 1 205035573 205035573 G T CNTN2 Silent p.P607P 0.13 TCGA-G4-6320-01 1 205238883 205238883 C T TMCC2 Missense_Mutation p.A518V 0.20 tolerated(0.26) benign(0.016) TCGA-G4-6320-01 1 21009290 21009290 G A KIF17 Silent p.Y773Y 0.17 TCGA-G4-6320-01 1 213009336 213009336 C T C1orf227 Silent p.P52P 0.12 TCGA-G4-6320-01 1 214478537 214478537 G T SMYD2 Nonsense_Mutation p.G61* 0.12 TCGA-G4-6320-01 1 214488150 214488151 - T SMYD2 Frame_Shift_Ins p.G97Wfs*39 0.12 TCGA-G4-6320-01 1 216019321 216019321 G T USH2A Missense_Mutation p.A2967D 0.21 benign(0.02) TCGA-G4-6320-01 1 22083149 22083149 T C USP48 Missense_Mutation p.N101S 0.39 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 1 22174481 22174481 C T HSPG2 Missense_Mutation p.V2615I 0.20 benign(0.056) TCGA-G4-6320-01 1 222867569 222867569 G A AIDA Nonsense_Mutation p.R73* 0.05 TCGA-G4-6320-01 1 223814701 223814701 C T CAPN8 Missense_Mutation p.C240Y 0.30 possibly_damaging(0.879) TCGA-G4-6320-01 1 224377362 224377362 G A DEGS1 Missense_Mutation p.G56S 0.19 tolerated(0.26) benign(0.001) TCGA-G4-6320-01 1 226050199 226050199 G A TMEM63A Missense_Mutation p.P303S 0.23 deleterious(0.02) benign(0.424) TCGA-G4-6320-01 1 227947065 227947065 G T SNAP47 Missense_Mutation p.E334D 0.20 tolerated(0.06) benign(0.054) TCGA-G4-6320-01 1 228109399 228109399 C T WNT9A Silent p.P306P 0.28 TCGA-G4-6320-01 1 228290355 228290355 G T C1orf35 Missense_Mutation p.L94M 0.26 deleterious(0) probably_damaging(0.99) TCGA-G4-6320-01 1 22834520 22834520 A T ZBTB40 Missense_Mutation p.T463S 0.05 deleterious(0.05) unknown(0) TCGA-G4-6320-01 1 228403458 228403458 G A OBSCN Missense_Mutation p.A675T 0.21 possibly_damaging(0.46) TCGA-G4-6320-01 1 228461716 228461716 G A OBSCN Missense_Mutation p.A2170T 0.28 benign(0.036) TCGA-G4-6320-01 1 228547856 228547856 G - OBSCN Intron 0.22 TCGA-G4-6320-01 1 228612677 228612677 C T HIST3H3 Missense_Mutation p.R117Q 0.20 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-G4-6320-01 1 22903062 22903062 G A EPHA8 Missense_Mutation p.R171H 0.25 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 1 229770775 229770775 T C URB2 Missense_Mutation p.Y139H 0.23 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 1 233344328 233344328 G A PCNXL2 Silent p.Y933Y 0.23 TCGA-G4-6320-01 1 234510029 234510029 G - COA6 Frame_Shift_Del p.A61Pfs*9 0.24 TCGA-G4-6320-01 1 234565933 234565933 G A TARBP1 Missense_Mutation p.P837S 0.29 tolerated(0.13) benign(0.008) TCGA-G4-6320-01 1 237586435 237586435 C T RYR2 Missense_Mutation p.R298C 0.21 benign(0.054) TCGA-G4-6320-01 1 240072217 240072217 C T CHRM3 Missense_Mutation p.A489V 0.16 deleterious(0) possibly_damaging(0.692) TCGA-G4-6320-01 1 241667345 241667345 G A FH Missense_Mutation p.P369S 0.24 deleterious(0) probably_damaging(0.948) TCGA-G4-6320-01 1 242015606 242015606 T A EXO1 Missense_Mutation p.F58L 0.09 deleterious(0.01) probably_damaging(0.957) TCGA-G4-6320-01 1 24288402 24288402 G T PNRC2 3'UTR 0.31 TCGA-G4-6320-01 1 243801005 243801005 C A AKT3 Missense_Mutation p.G157C 0.34 deleterious(0) probably_damaging(0.965) TCGA-G4-6320-01 1 244735797 244735797 A G C1orf101 Missense_Mutation p.D558G 0.18 tolerated(0.16) benign(0.075) TCGA-G4-6320-01 1 245849931 245849931 G A KIF26B Missense_Mutation p.D1216N 0.23 tolerated(0.09) unknown(0) TCGA-G4-6320-01 1 247654793 247654793 C T OR2W5 RNA 0.24 TCGA-G4-6320-01 1 247694770 247694770 C T OR2C3 3'UTR 0.56 TCGA-G4-6320-01 1 247901934 247901934 G T OR14K1 Missense_Mutation p.Q6H 0.24 tolerated(0.58) benign(0.001) TCGA-G4-6320-01 1 248308900 248308900 C A OR2M5 Missense_Mutation p.L151M 0.15 tolerated(0.19) probably_damaging(0.983) TCGA-G4-6320-01 1 248802157 248802157 G T OR2T35 Missense_Mutation p.L135I 0.13 deleterious(0.03) benign(0.005) TCGA-G4-6320-01 1 24927496 24927496 C A NCMAP Missense_Mutation p.L50M 0.17 tolerated(0.08) probably_damaging(0.948) TCGA-G4-6320-01 1 27206059 27206059 G A GPN2 3'UTR 0.19 TCGA-G4-6320-01 1 32127261 32127261 C T COL16A1 Silent p.P1242P 0.21 TCGA-G4-6320-01 1 32149339 32149339 C A COL16A1 Missense_Mutation p.G783V 0.27 unknown(0) TCGA-G4-6320-01 1 32157060 32157060 G - COL16A1 Frame_Shift_Del p.G453Afs*8 0.23 TCGA-G4-6320-01 1 32542187 32542187 G A TMEM39B Intron 0.40 TCGA-G4-6320-01 1 32691779 32691779 G A EIF3I Silent p.Q86Q 0.07 TCGA-G4-6320-01 1 33359536 33359536 G A HPCA 3'UTR 0.09 TCGA-G4-6320-01 1 3551583 3551583 G A WRAP73 Missense_Mutation p.A265V 0.26 tolerated(0.26) benign(0.002) TCGA-G4-6320-01 1 35870755 35870756 - A ZMYM4 Frame_Shift_Ins p.N1222Kfs*15 0.19 TCGA-G4-6320-01 1 3649504 3649504 G A TP73 Missense_Mutation p.R591H 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 1 3703666 3703666 G A LRRC47 Missense_Mutation p.S275L 0.30 tolerated(0.22) benign(0.023) TCGA-G4-6320-01 1 37291299 37291299 G A GRIK3 Silent p.S553S 0.20 TCGA-G4-6320-01 1 3731960 3731960 G A CEP104 3'UTR 0.15 TCGA-G4-6320-01 1 39918417 39918417 C T MACF1 Missense_Mutation p.T4833M 0.21 probably_damaging(0.981) TCGA-G4-6320-01 1 43804305 43804305 G A MPL Missense_Mutation p.R102H 0.21 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 1 44057098 44057098 G A PTPRF Missense_Mutation p.A469T 0.29 tolerated(0.16) benign(0.142) TCGA-G4-6320-01 1 44595475 44595475 C T KLF17 Missense_Mutation p.P178S 0.25 tolerated(0.22) benign(0.343) TCGA-G4-6320-01 1 45271698 45271698 C T TCTEX1D4 Missense_Mutation p.V215I 0.30 deleterious(0) probably_damaging(0.963) TCGA-G4-6320-01 1 46655977 46655977 A G POMGNT1 Intron 0.51 TCGA-G4-6320-01 1 50884349 50884349 C T DMRTA2 Silent p.P539P 0.09 TCGA-G4-6320-01 1 52403060 52403060 G A RAB3B Missense_Mutation p.R85W 0.20 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 1 54060198 54060198 C T GLIS1 Silent p.S126S 0.23 TCGA-G4-6320-01 1 55512300 55512300 G A PCSK9 Silent p.A168A 0.16 TCGA-G4-6320-01 1 6157383 6157383 C T KCNAB2 Missense_Mutation p.A375V 0.17 tolerated(0.79) benign(0.01) TCGA-G4-6320-01 1 62995051 62995051 G A DOCK7 Silent p.D1195D 0.26 TCGA-G4-6320-01 1 65130355 65130355 A T CACHD1 Nonsense_Mutation p.R706* 0.25 TCGA-G4-6320-01 1 6520226 6520226 G A ESPN 3'UTR 0.06 TCGA-G4-6320-01 1 65871620 65871620 C A DNAJC6 Missense_Mutation p.S765R 0.13 deleterious(0.03) possibly_damaging(0.563) TCGA-G4-6320-01 1 6639180 6639180 G A TAS1R1 Missense_Mutation p.A688T 0.16 tolerated(0.46) benign(0.034) TCGA-G4-6320-01 1 6649091 6649091 A G ZBTB48 Missense_Mutation p.Q629R 0.17 tolerated_low_confidence(0.09) benign(0.017) TCGA-G4-6320-01 1 67147953 67147953 G A SGIP1 Missense_Mutation p.G406R 0.17 deleterious(0) possibly_damaging(0.642) TCGA-G4-6320-01 1 68153673 68153674 - A GADD45A 3'UTR 0.36 TCGA-G4-6320-01 1 70504627 70504627 G T LRRC7 Missense_Mutation p.M1002I 0.36 deleterious(0) probably_damaging(0.943) TCGA-G4-6320-01 1 75602314 75602314 C T LHX8 Silent p.C15C 0.12 TCGA-G4-6320-01 1 75702749 75702749 G T SLC44A5 Silent p.I221I 0.12 TCGA-G4-6320-01 1 76262838 76262838 G A MSH4 Silent p.T56T 0.29 TCGA-G4-6320-01 1 87031119 87031119 G A CLCA4 Missense_Mutation p.M240I 0.10 deleterious(0.01) benign(0.219) TCGA-G4-6320-01 1 94471056 94471056 G A ABCA4 Nonsense_Mutation p.R2030* 0.17 TCGA-G4-6320-01 1 99127421 99127421 T C SNX7 Missense_Mutation p.V45A 0.21 tolerated_low_confidence(0.77) probably_damaging(0.954) TCGA-G4-6320-01 20 10622195 10622195 C T JAG1 Silent p.P943P 0.26 TCGA-G4-6320-01 20 17608154 17608154 C T RRBP1 Missense_Mutation p.V542I 0.28 tolerated(0.2) benign(0.001) TCGA-G4-6320-01 20 20056250 20056250 G A C20orf26 Missense_Mutation p.R186H 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 20 2097700 2097700 G T STK35 Missense_Mutation p.W427C 0.06 deleterious(0) probably_damaging(0.982) TCGA-G4-6320-01 20 23807111 23807111 A G CST2 Missense_Mutation p.Y63H 0.22 deleterious(0) benign(0.394) TCGA-G4-6320-01 20 23967239 23967239 C T GGTLC1 Missense_Mutation p.E4K 0.27 tolerated(0.36) benign(0.053) TCGA-G4-6320-01 20 25196310 25196310 A G ENTPD6 Splice_Site p.X225_splice 0.24 TCGA-G4-6320-01 20 25273089 25273089 G A PYGB Missense_Mutation p.E673K 0.20 deleterious(0) probably_damaging(0.997) TCGA-G4-6320-01 20 25275587 25275587 C T ABHD12 3'UTR 0.29 TCGA-G4-6320-01 20 25493589 25493589 G A NINL Missense_Mutation p.R111C 0.49 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 20 30526950 30526950 C T TTLL9 Missense_Mutation p.T375M 0.20 deleterious(0.02) possibly_damaging(0.496) TCGA-G4-6320-01 20 3096060 3096060 T C UBOX5 Silent p.A436A 0.07 TCGA-G4-6320-01 20 31024661 31024661 C T ASXL1 Silent p.A1382A 0.26 TCGA-G4-6320-01 20 3208365 3208365 C T SLC4A11 3'UTR 0.33 TCGA-G4-6320-01 20 33000353 33000353 G A ITCH Missense_Mutation p.R82H 0.14 deleterious(0) benign(0.017) TCGA-G4-6320-01 20 33356325 33356325 G T NCOA6 Silent p.P152P 0.18 TCGA-G4-6320-01 20 33567505 33567505 G A MYH7B Silent p.P122P 0.13 TCGA-G4-6320-01 20 35176565 35176565 C T MYL9 Silent p.N105N 0.15 TCGA-G4-6320-01 20 35748913 35748913 A - MROH8 Frame_Shift_Del p.F768Lfs*38 0.14 TCGA-G4-6320-01 20 372055 372055 G A TRIB3 Missense_Mutation p.R139Q 0.29 tolerated(0.08) benign(0.096) TCGA-G4-6320-01 20 37580402 37580402 C T FAM83D Missense_Mutation p.R363W 0.09 deleterious(0.03) probably_damaging(0.988) TCGA-G4-6320-01 20 39832105 39832105 G T ZHX3 Silent p.P484P 0.05 TCGA-G4-6320-01 20 40944586 40944586 G T PTPRT Missense_Mutation p.A639E 0.27 tolerated(1) benign(0.115) TCGA-G4-6320-01 20 4229096 4229096 T C ADRA1D Missense_Mutation p.D170G 0.16 deleterious(0.01) benign(0.444) TCGA-G4-6320-01 20 42694554 42694554 C T TOX2 Missense_Mutation p.A388V 0.22 tolerated(0.25) benign(0.181) TCGA-G4-6320-01 20 43118186 43118186 G T TTPAL 3'UTR 0.14 TCGA-G4-6320-01 20 44003982 44003983 TA - TP53TG5 Frame_Shift_Del p.I155Rfs*3 0.17 TCGA-G4-6320-01 20 44538655 44538655 C T PLTP Silent p.Q85Q 0.14 TCGA-G4-6320-01 20 45239191 45239191 G A SLC13A3 Silent p.T145T 0.18 TCGA-G4-6320-01 20 46279879 46279887 CAGCAACAG - NCOA3 In_Frame_Del p.Q1274_Q1276del 0.18 TCGA-G4-6320-01 20 48562686 48562686 C T RNF114 Missense_Mutation p.R138C 0.14 deleterious(0) benign(0.255) TCGA-G4-6320-01 20 55204551 55204551 G - TFAP2C 5'UTR 0.13 TCGA-G4-6320-01 20 56846507 56846507 A - PPP4R1L Intron 0.10 TCGA-G4-6320-01 20 57767605 57767605 G A ZNF831 Missense_Mutation p.E511K 0.11 deleterious(0) probably_damaging(0.985) TCGA-G4-6320-01 20 60926969 60926969 C T LAMA5 Missense_Mutation p.R285H 0.17 probably_damaging(1) TCGA-G4-6320-01 20 62193251 62193251 G - HELZ2 Frame_Shift_Del p.R2206Vfs*29 0.21 TCGA-G4-6320-01 20 62370082 62370082 G A LIME1 Silent p.P239P 0.21 TCGA-G4-6320-01 20 62521229 62521229 C T TPD52L2 Silent p.N207N 0.17 TCGA-G4-6320-01 20 62851129 62851129 C T MYT1 Nonsense_Mutation p.R679* 0.16 TCGA-G4-6320-01 21 11039010 11039010 C A BAGE2 RNA 0.03 TCGA-G4-6320-01 21 32582414 32582414 T C TIAM1 Missense_Mutation p.T779A 0.20 tolerated(0.61) benign(0.002) TCGA-G4-6320-01 21 33297053 33297053 C T HUNK Missense_Mutation p.R179W 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 21 33689095 33689095 G A URB1 Missense_Mutation p.R2106W 0.08 deleterious(0.01) benign(0.022) TCGA-G4-6320-01 21 33746004 33746004 C T URB1 Silent p.S276S 0.24 TCGA-G4-6320-01 21 34107147 34107147 T - PAXBP1 3'UTR 0.18 TCGA-G4-6320-01 21 34400312 34400312 C T OLIG2 3'UTR 0.30 TCGA-G4-6320-01 21 34876292 34876292 A - GART 3'UTR 0.19 TCGA-G4-6320-01 21 34948101 34948101 G A SON Missense_Mutation p.A2375T 0.21 unknown(0) TCGA-G4-6320-01 21 37605158 37605158 T C DOPEY2 Missense_Mutation p.C803R 0.25 tolerated(0.05) probably_damaging(0.923) TCGA-G4-6320-01 21 38604880 38604880 C T DSCR3 Intron 0.27 TCGA-G4-6320-01 21 41384891 41384891 G A DSCAM 3'UTR 0.26 TCGA-G4-6320-01 21 41423893 41423893 G A DSCAM Missense_Mutation p.P1726L 0.42 deleterious_low_confidence(0.03) possibly_damaging(0.624) TCGA-G4-6320-01 21 42613864 42613864 G T BACE2 Missense_Mutation p.G246V 0.06 deleterious(0.01) probably_damaging(0.947) TCGA-G4-6320-01 21 43164238 43164238 G A RIPK4 Silent p.S333S 0.24 TCGA-G4-6320-01 21 43557561 43557561 A G UMODL1 Missense_Mutation p.H1391R 0.21 tolerated(0.53) benign(0) TCGA-G4-6320-01 21 43733677 43733677 G - TFF3 Frame_Shift_Del p.K64Rfs*74 0.25 TCGA-G4-6320-01 21 44476980 44476980 C T CBS Silent p.T495T 0.26 TCGA-G4-6320-01 21 45978125 45978125 C T KRTAP10-3 Silent p.V158V 0.17 TCGA-G4-6320-01 21 46685851 46685851 G A POFUT2 Intron 0.27 TCGA-G4-6320-01 21 47552033 47552033 G A COL6A2 Missense_Mutation p.R876H 0.23 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 21 47571590 47571591 - C FTCD Frame_Shift_Ins p.A173Gfs*14 0.30 TCGA-G4-6320-01 21 47717496 47717496 G A YBEY Missense_Mutation p.R151H 0.15 tolerated(0.6) benign(0.002) TCGA-G4-6320-01 22 17072040 17072040 C G CCT8L2 Missense_Mutation p.M467I 0.12 deleterious(0.04) benign(0.229) TCGA-G4-6320-01 22 17288788 17288788 C T XKR3 Missense_Mutation p.R59Q 0.11 tolerated(0.09) possibly_damaging(0.857) TCGA-G4-6320-01 22 17488858 17488858 C T GAB4 Silent p.S49S 0.43 TCGA-G4-6320-01 22 17619185 17619185 G A CECR5 Missense_Mutation p.T333M 0.25 tolerated(0.13) benign(0.048) TCGA-G4-6320-01 22 19751682 19751682 G A TBX1 Missense_Mutation p.A173T 0.16 deleterious(0) possibly_damaging(0.89) TCGA-G4-6320-01 22 20052217 20052217 G - TANGO2 3'UTR 0.17 TCGA-G4-6320-01 22 21384535 21384536 - G SLC7A4 Frame_Shift_Ins p.R363Pfs*92 0.23 TCGA-G4-6320-01 22 21385198 21385198 C T SLC7A4 Missense_Mutation p.D302N 0.22 tolerated(0.43) benign(0.021) TCGA-G4-6320-01 22 23438376 23438376 C T GNAZ Missense_Mutation p.A165V 0.14 tolerated(0.21) possibly_damaging(0.684) TCGA-G4-6320-01 22 24143241 24143241 G A SMARCB1 Missense_Mutation p.R158Q 0.43 tolerated(0.19) benign(0.018) TCGA-G4-6320-01 22 24176330 24176330 G A SMARCB1 Missense_Mutation p.R374Q 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6320-01 22 24622072 24622072 C T GGT5 Missense_Mutation p.V401M 0.14 deleterious(0) probably_damaging(0.973) TCGA-G4-6320-01 22 24717413 24717413 C T SPECC1L Silent p.R155R 0.41 TCGA-G4-6320-01 22 26693013 26693013 G A SEZ6L Missense_Mutation p.D377N 0.40 tolerated(0.29) possibly_damaging(0.747) TCGA-G4-6320-01 22 26951188 26951188 C T TPST2 Intron 0.15 TCGA-G4-6320-01 22 29121018 29121018 C T CHEK2 Missense_Mutation p.R223H 0.27 deleterious(0.02) benign(0.03) TCGA-G4-6320-01 22 32480433 32480433 C T SLC5A1 Silent p.H224H 0.14 TCGA-G4-6320-01 22 32914038 32914038 C T SYN3 Silent p.P534P 0.10 TCGA-G4-6320-01 22 37397968 37397968 C T TEX33 Silent p.T133T 0.21 TCGA-G4-6320-01 22 38122338 38122338 G A TRIOBP Missense_Mutation p.G1259R 0.22 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-G4-6320-01 22 38528878 38528878 C T PLA2G6 Missense_Mutation p.R346H 0.39 tolerated(0.16) benign(0.013) TCGA-G4-6320-01 22 38690489 38690489 G A CSNK1E Missense_Mutation p.R313C 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.548) TCGA-G4-6320-01 22 39387520 39387520 G A APOBEC3B Missense_Mutation p.V303M 0.10 deleterious(0.02) benign(0.005) TCGA-G4-6320-01 22 39884097 39884097 C T MGAT3 Missense_Mutation p.R249W 0.27 deleterious(0) probably_damaging(0.983) TCGA-G4-6320-01 22 40661695 40661695 C T TNRC6B Silent p.G487G 0.22 TCGA-G4-6320-01 22 40696935 40696935 C T TNRC6B Nonsense_Mutation p.Q1288* 0.37 TCGA-G4-6320-01 22 41257212 41257212 C T DNAJB7 Missense_Mutation p.V263M 0.18 tolerated(0.34) benign(0.032) TCGA-G4-6320-01 22 41650435 41650435 C T RANGAP1 Silent p.E379E 0.12 TCGA-G4-6320-01 22 41792040 41792040 C T TEF 3'UTR 0.27 TCGA-G4-6320-01 22 44107387 44107387 T C EFCAB6 Missense_Mutation p.I333M 0.28 tolerated(0.11) benign(0.007) TCGA-G4-6320-01 22 44328969 44328969 T C PNPLA3 Splice_Site p.X232_splice 0.17 TCGA-G4-6320-01 22 44385028 44385028 C T SAMM50 Silent p.G371G 0.16 TCGA-G4-6320-01 22 45218289 45218289 T C ARHGAP8 Missense_Mutation p.L264P 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 22 46641070 46641070 A - CDPF1 Frame_Shift_Del p.P98Lfs*32 0.19 TCGA-G4-6320-01 22 46835223 46835223 G A CELSR1 Silent p.I1423I 0.28 TCGA-G4-6320-01 22 48885431 48885431 C T FAM19A5 Silent p.S9S 0.25 TCGA-G4-6320-01 22 50191612 50191612 C T BRD1 Missense_Mutation p.V647M 0.26 tolerated(0.12) benign(0.279) TCGA-G4-6320-01 22 50546606 50546606 C T MOV10L1 Missense_Mutation p.R162W 0.15 tolerated(0.51) benign(0) TCGA-G4-6320-01 2 100194858 100194858 G A AFF3 Missense_Mutation p.T975M 0.27 tolerated(0.18) benign(0.065) TCGA-G4-6320-01 2 101874393 101874393 A G CNOT11 Missense_Mutation p.S219G 0.24 tolerated(0.13) possibly_damaging(0.899) TCGA-G4-6320-01 2 105889330 105889330 G A TGFBRAP1 Nonsense_Mutation p.R652* 0.07 TCGA-G4-6320-01 2 120005685 120005685 T C STEAP3 Missense_Mutation p.L318P 0.22 deleterious(0) probably_damaging(0.957) TCGA-G4-6320-01 2 121712999 121712999 C T GLI2 Silent p.P212P 0.25 TCGA-G4-6320-01 2 121747650 121747650 G - GLI2 Frame_Shift_Del p.R1387Lfs*143 0.10 TCGA-G4-6320-01 2 128347770 128347770 G A MYO7B Missense_Mutation p.R653H 0.21 deleterious(0) probably_damaging(0.961) TCGA-G4-6320-01 2 130898856 130898856 G T CCDC74B Silent p.P186P 0.17 TCGA-G4-6320-01 2 133541044 133541044 G A NCKAP5 Nonsense_Mutation p.Q1114* 0.06 TCGA-G4-6320-01 2 133541953 133541953 G A NCKAP5 Missense_Mutation p.P811S 0.07 tolerated(0.11) benign(0.133) TCGA-G4-6320-01 2 135012194 135012194 G A MGAT5 Missense_Mutation p.A74T 0.25 tolerated(0.46) benign(0.009) TCGA-G4-6320-01 2 140995848 140995848 C A LRP1B Missense_Mutation p.R4478I 0.23 benign(0.308) TCGA-G4-6320-01 2 141773464 141773464 C A LRP1B Missense_Mutation p.W664L 0.26 possibly_damaging(0.637) TCGA-G4-6320-01 2 152214158 152214158 G T TNFAIP6 5'UTR 0.24 TCGA-G4-6320-01 2 152497148 152497148 G A NEB Silent p.L2802L 0.07 TCGA-G4-6320-01 2 160086815 160086816 CA - TANC1 Frame_Shift_Del p.T1627Rfs*54 0.10 TCGA-G4-6320-01 2 160193490 160193490 T C BAZ2B Missense_Mutation p.Q1920R 0.29 possibly_damaging(0.884) TCGA-G4-6320-01 2 16085894 16085894 G A MYCN Missense_Mutation p.R357H 0.23 deleterious(0.04) benign(0.075) TCGA-G4-6320-01 2 168099932 168099932 C T XIRP2 Missense_Mutation p.A677V 0.30 benign(0.008) TCGA-G4-6320-01 2 168107194 168107194 A C XIRP2 Missense_Mutation p.T3098P 0.24 benign(0.013) TCGA-G4-6320-01 2 169313004 169313004 C T CERS6 Missense_Mutation p.P16S 0.19 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 2 170103489 170103489 G A LRP2 Silent p.N972N 0.49 TCGA-G4-6320-01 2 170592732 170592732 T C KLHL23 Missense_Mutation p.I403T 0.13 deleterious(0.01) possibly_damaging(0.602) TCGA-G4-6320-01 2 171716494 171716494 G T GAD1 3'UTR 0.17 TCGA-G4-6320-01 2 172950319 172950319 G A DLX1 5'UTR 0.17 TCGA-G4-6320-01 2 175265765 175265765 T G SCRN3 Missense_Mutation p.I130S 0.40 deleterious(0) possibly_damaging(0.803) TCGA-G4-6320-01 2 179406174 179406174 C A TTN Missense_Mutation p.D32544Y 0.18 TCGA-G4-6320-01 2 179412310 179412310 T - TTN Frame_Shift_Del p.K31348Sfs*48 0.16 TCGA-G4-6320-01 2 179412923 179412923 G A TTN Missense_Mutation p.R31144W 0.30 TCGA-G4-6320-01 2 179483380 179483380 C A TTN Missense_Mutation p.G15633W 0.41 TCGA-G4-6320-01 2 179611829 179611829 C A TTN Intron 0.11 TCGA-G4-6320-01 2 1843050 1843050 C T MYT1L Missense_Mutation p.R982K 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6320-01 2 187693166 187693166 A T ZSWIM2 Missense_Mutation p.L483I 0.18 tolerated(0.11) possibly_damaging(0.619) TCGA-G4-6320-01 2 190554554 190554554 A C ANKAR Missense_Mutation p.K301N 0.15 tolerated(0.2) benign(0.015) TCGA-G4-6320-01 2 191835314 191835314 G A STAT1 3'UTR 0.50 TCGA-G4-6320-01 2 198570085 198570085 G A AC011997.1 Intron 0.17 TCGA-G4-6320-01 2 201407371 201407371 C T SGOL2 Missense_Mutation p.R153C 0.17 deleterious(0.05) possibly_damaging(0.901) TCGA-G4-6320-01 2 202254031 202254031 C A TRAK2 Missense_Mutation p.E463D 0.27 tolerated(0.62) benign(0.005) TCGA-G4-6320-01 2 202589136 202589136 G A ALS2 Missense_Mutation p.R1132C 0.18 tolerated(0.08) probably_damaging(0.991) TCGA-G4-6320-01 2 204305972 204305972 G A RAPH1 Silent p.P647P 0.25 TCGA-G4-6320-01 2 20453643 20453643 G A PUM2 Silent p.Y1001Y 0.23 TCGA-G4-6320-01 2 204599638 204599638 C T CD28 3'UTR 0.28 TCGA-G4-6320-01 2 206041295 206041295 C A PARD3B Missense_Mutation p.Q578K 0.14 tolerated(0.83) benign(0.002) TCGA-G4-6320-01 2 207424806 207424806 G A ADAM23 Missense_Mutation p.R378H 0.28 tolerated(0.28) benign(0.004) TCGA-G4-6320-01 2 209190189 209190189 A - PIKFYVE Frame_Shift_Del p.N886Tfs*7 0.22 TCGA-G4-6320-01 2 211455623 211455623 G A CPS1 Missense_Mutation p.A320T 0.21 deleterious(0) benign(0.25) TCGA-G4-6320-01 2 212285241 212285241 C A ERBB4 Missense_Mutation p.E1020D 0.16 tolerated(0.69) benign(0.005) TCGA-G4-6320-01 2 218925290 218925290 G T CXCR2P1 RNA 0.22 TCGA-G4-6320-01 2 218925686 218925686 C T CXCR2P1 RNA 0.24 TCGA-G4-6320-01 2 219920030 219920030 C - IHH Frame_Shift_Del p.E379Rfs*18 0.20 TCGA-G4-6320-01 2 220074113 220074113 G T ZFAND2B 3'UTR 0.20 TCGA-G4-6320-01 2 220353387 220353387 C T SPEG Nonsense_Mutation p.R2676* 0.23 TCGA-G4-6320-01 2 226516391 226516392 - G NYAP2 3'UTR 0.33 TCGA-G4-6320-01 2 227660075 227660075 C - IRS1 Frame_Shift_Del p.G1127Afs*12 0.21 TCGA-G4-6320-01 2 232390068 232390068 C T NMUR1 Missense_Mutation p.V323M 0.17 tolerated(0.12) possibly_damaging(0.56) TCGA-G4-6320-01 2 233986948 233986948 C T INPP5D Silent p.D110D 0.29 TCGA-G4-6320-01 2 234869591 234869591 G A TRPM8 Missense_Mutation p.A512T 0.21 tolerated(0.14) probably_damaging(0.964) TCGA-G4-6320-01 2 240946733 240946734 - T NDUFA10 Frame_Shift_Ins p.V269Gfs*6 0.21 TCGA-G4-6320-01 2 240957284 240957284 C A NDUFA10 Intron 0.16 TCGA-G4-6320-01 2 241696795 241696795 C T KIF1A Silent p.A933A 0.27 TCGA-G4-6320-01 2 242148762 242148762 C T ANO7 Silent p.A434A 0.30 TCGA-G4-6320-01 2 24431137 24431137 G A ITSN2 Silent p.T1549T 0.29 TCGA-G4-6320-01 2 24469034 24469034 C T ITSN2 Missense_Mutation p.V1181I 0.15 tolerated(0.05) unknown(0) TCGA-G4-6320-01 2 25043676 25043676 G A ADCY3 Missense_Mutation p.R1057W 0.19 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 2 26350822 26350822 T C RAB10 Splice_Site p.X173_splice 0.26 TCGA-G4-6320-01 2 27448773 27448773 C T CAD Silent p.D607D 0.31 TCGA-G4-6320-01 2 27463946 27463946 G T CAD Missense_Mutation p.G1887C 0.27 deleterious(0.02) benign(0.285) TCGA-G4-6320-01 2 27556851 27556851 G A GTF3C2 Missense_Mutation p.A531V 0.06 tolerated(0.62) benign(0.075) TCGA-G4-6320-01 2 27800290 27800290 G T C2orf16 Missense_Mutation p.R284M 0.23 deleterious(0) probably_damaging(0.991) TCGA-G4-6320-01 2 29225579 29225579 C T FAM179A Missense_Mutation p.P202L 0.52 tolerated(0.09) benign(0.001) TCGA-G4-6320-01 2 29415912 29415912 C A ALK 3'UTR 0.21 TCGA-G4-6320-01 2 31360999 31360999 C - GALNT14 5'UTR 0.15 TCGA-G4-6320-01 2 37041397 37041397 G A VIT Missense_Mutation p.A659T 0.17 tolerated(0.32) benign(0.052) TCGA-G4-6320-01 2 39025059 39025059 G A DHX57 3'UTR 0.52 TCGA-G4-6320-01 2 39095401 39095401 G A DHX57 Silent p.G49G 0.19 TCGA-G4-6320-01 2 47698135 47698135 A - MSH2 Frame_Shift_Del p.N566Ifs*24 0.20 TCGA-G4-6320-01 2 48035198 48035198 A - FBXO11 3'UTR 0.19 TCGA-G4-6320-01 2 56227907 56227907 G A MIR216B RNA 0.21 TCGA-G4-6320-01 2 56599555 56599555 G A CCDC85A Missense_Mutation p.R465Q 0.30 tolerated_low_confidence(0.13) possibly_damaging(0.602) TCGA-G4-6320-01 2 69409751 69409751 C T ANTXR1 Missense_Mutation p.R438C 0.14 tolerated(0.07) probably_damaging(0.953) TCGA-G4-6320-01 2 69555477 69555477 C T GFPT1 Missense_Mutation p.V607M 0.27 deleterious(0.03) possibly_damaging(0.892) TCGA-G4-6320-01 2 71043821 71043821 G A CLEC4F Missense_Mutation p.A231V 0.17 tolerated(0.09) probably_damaging(0.957) TCGA-G4-6320-01 2 71693983 71693983 G A DYSF Missense_Mutation p.C4Y 0.24 deleterious(0) benign(0.138) TCGA-G4-6320-01 2 71827937 71827937 C T DYSF Silent p.L1288L 0.35 TCGA-G4-6320-01 2 72562088 72562088 G A EXOC6B Silent p.I728I 0.16 TCGA-G4-6320-01 2 73302542 73302542 A G RAB11FIP5 3'UTR 0.22 TCGA-G4-6320-01 2 85576620 85576620 C - RETSAT Frame_Shift_Del p.G295Vfs*12 0.16 TCGA-G4-6320-01 2 85890797 85890797 G A SFTPB Silent p.S294S 0.14 TCGA-G4-6320-01 2 88895173 88895173 C - EIF2AK3 Frame_Shift_Del p.N150Ifs*3 0.16 TCGA-G4-6320-01 2 95950732 95950732 C T PROM2 Missense_Mutation p.R582W 0.25 deleterious(0) benign(0) TCGA-G4-6320-01 2 96789675 96789675 T A ASTL Missense_Mutation p.I404F 0.17 deleterious_low_confidence(0.01) benign(0.038) TCGA-G4-6320-01 2 97025921 97025921 A - NCAPH Frame_Shift_Del p.D469Ifs*25 0.21 TCGA-G4-6320-01 2 97505817 97505817 G - ANKRD23 Frame_Shift_Del p.L214Cfs*23 0.11 TCGA-G4-6320-01 2 99449397 99449397 G A KIAA1211L Silent p.S101S 0.38 TCGA-G4-6320-01 3 100568940 100568940 G A ABI3BP Missense_Mutation p.P442S 0.19 tolerated(0.07) possibly_damaging(0.641) TCGA-G4-6320-01 3 10258627 10258627 C - IRAK2 Frame_Shift_Del p.N268Mfs*102 0.24 TCGA-G4-6320-01 3 113187141 113187141 G T SPICE1 Missense_Mutation p.L334I 0.15 deleterious(0) probably_damaging(0.93) TCGA-G4-6320-01 3 113517293 113517293 G A ATP6V1A Silent p.K498K 0.21 TCGA-G4-6320-01 3 119132788 119132788 C T ARHGAP31 Missense_Mutation p.S671L 0.05 tolerated(0.49) benign(0.004) TCGA-G4-6320-01 3 12198945 12198945 C T TIMP4 Silent p.P59P 0.17 TCGA-G4-6320-01 3 122641253 122641253 C T SEMA5B Silent p.T492T 0.24 TCGA-G4-6320-01 3 124237313 124237313 G A KALRN 3'UTR 0.23 TCGA-G4-6320-01 3 12627296 12627296 T A RAF1 Missense_Mutation p.I474L 0.20 deleterious(0) probably_damaging(0.914) TCGA-G4-6320-01 3 1269623 1269623 G A CNTN6 Missense_Mutation p.A102T 0.18 deleterious(0.05) possibly_damaging(0.693) TCGA-G4-6320-01 3 129275242 129275242 C T PLXND1 Silent p.T1897T 0.05 TCGA-G4-6320-01 3 133099310 133099310 C T TMEM108 Missense_Mutation p.T252I 0.25 tolerated_low_confidence(0.06) probably_damaging(0.994) TCGA-G4-6320-01 3 138665921 138665921 C T FOXL2 5'UTR 0.11 TCGA-G4-6320-01 3 14154206 14154207 - T CHCHD4 3'UTR 0.24 TCGA-G4-6320-01 3 14166584 14166584 C T TMEM43 5'UTR 0.16 TCGA-G4-6320-01 3 150908529 150908529 G T MED12L Missense_Mutation p.K593N 0.18 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 3 151155141 151155141 C T IGSF10 Missense_Mutation p.R2403Q 0.26 deleterious(0.03) possibly_damaging(0.882) TCGA-G4-6320-01 3 153973354 153973354 G A ARHGEF26 3'UTR 0.30 TCGA-G4-6320-01 3 160952919 160952919 A - NMD3 Frame_Shift_Del p.T168Lfs*8 0.16 TCGA-G4-6320-01 3 16368293 16368293 C T RFTN1 Missense_Mutation p.V413I 0.23 tolerated(0.34) benign(0.009) TCGA-G4-6320-01 3 169802469 169802469 A - GPR160 Frame_Shift_Del p.I239Yfs*22 0.17 TCGA-G4-6320-01 3 178984478 178984478 G A KCNMB3 Silent p.P7P 0.20 TCGA-G4-6320-01 3 179322725 179322725 C A NDUFB5 Missense_Mutation p.A41D 0.22 tolerated(0.64) benign(0.005) TCGA-G4-6320-01 3 180377523 180377523 T C CCDC39 Missense_Mutation p.E184G 0.21 deleterious(0.01) probably_damaging(0.913) TCGA-G4-6320-01 3 183906044 183906044 C T ABCF3 Missense_Mutation p.R229W 0.24 tolerated(0.06) possibly_damaging(0.901) TCGA-G4-6320-01 3 186002467 186002467 G A DGKG Silent p.N192N 0.24 TCGA-G4-6320-01 3 190573270 190573270 T G GMNC Silent p.P273P 0.29 TCGA-G4-6320-01 3 19190105 19190105 C A KCNH8 5'UTR 0.34 TCGA-G4-6320-01 3 194140669 194140669 A - ATP13A3 Frame_Shift_Del p.L1114Yfs*22 0.16 TCGA-G4-6320-01 3 196613324 196613324 C T SENP5 Silent p.S424S 0.25 TCGA-G4-6320-01 3 24009489 24009489 T A NR1D2 Missense_Mutation p.F506L 0.15 deleterious(0) probably_damaging(0.996) TCGA-G4-6320-01 3 25770718 25770718 C T NGLY1 Missense_Mutation p.R506Q 0.21 deleterious(0.01) possibly_damaging(0.9) TCGA-G4-6320-01 3 27444794 27444794 T C SLC4A7 Silent p.T710T 0.24 TCGA-G4-6320-01 3 27478939 27478939 G A SLC4A7 Missense_Mutation p.T114M 0.19 deleterious(0.02) probably_damaging(0.931) TCGA-G4-6320-01 3 30713468 30713468 C T TGFBR2 Nonsense_Mutation p.Q290* 0.25 TCGA-G4-6320-01 3 31705635 31705635 C A OSBPL10 Missense_Mutation p.R729L 0.06 deleterious(0.01) probably_damaging(1) TCGA-G4-6320-01 3 33437693 33437693 C T UBP1 Missense_Mutation p.A451T 0.22 tolerated(0.69) benign(0.001) TCGA-G4-6320-01 3 35778738 35778738 C A ARPP21 Silent p.R476R 0.07 TCGA-G4-6320-01 3 38347502 38347502 C A SLC22A14 5'UTR 0.23 TCGA-G4-6320-01 3 383657 383657 G A CHL1 Missense_Mutation p.A191T 0.17 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 3 38542944 38542944 C T EXOG Nonsense_Mutation p.R138* 0.23 TCGA-G4-6320-01 3 38798541 38798541 T C SCN10A Missense_Mutation p.T354A 0.08 deleterious(0.02) probably_damaging(0.986) TCGA-G4-6320-01 3 39225676 39225676 G A XIRP1 Missense_Mutation p.T1754M 0.24 deleterious(0) possibly_damaging(0.634) TCGA-G4-6320-01 3 42727030 42727030 G A KLHL40 5'UTR 0.17 TCGA-G4-6320-01 3 46723023 46723023 C T ALS2CL Missense_Mutation p.R414Q 0.25 tolerated(0.41) benign(0.015) TCGA-G4-6320-01 3 47038013 47038013 G A NBEAL2 Missense_Mutation p.E802K 0.30 deleterious(0.03) benign(0.403) TCGA-G4-6320-01 3 4726793 4726793 C T ITPR1 Missense_Mutation p.A1187V 0.26 deleterious(0.03) benign(0.007) TCGA-G4-6320-01 3 47537589 47537589 A - ELP6 Frame_Shift_Del p.F257Lfs*29 0.17 TCGA-G4-6320-01 3 48638826 48638826 C T UQCRC1 Missense_Mutation p.A261T 0.21 tolerated(0.31) benign(0.003) TCGA-G4-6320-01 3 49050626 49050626 T C WDR6 Silent p.A583A 0.34 TCGA-G4-6320-01 3 49699976 49699976 C T BSN Silent p.C3566C 0.30 TCGA-G4-6320-01 3 49831054 49831054 G T CDHR4 Missense_Mutation p.H529N 0.30 tolerated(0.07) possibly_damaging(0.697) TCGA-G4-6320-01 3 49924665 49924665 C T MST1R 3'UTR 0.41 TCGA-G4-6320-01 3 51708504 51708504 C T TEX264 Missense_Mutation p.R62W 0.33 deleterious(0.01) probably_damaging(0.912) TCGA-G4-6320-01 3 52326642 52326642 C T GLYCTK Missense_Mutation p.R358C 0.23 tolerated(0.18) benign(0.001) TCGA-G4-6320-01 3 52522597 52522597 G A NISCH Missense_Mutation p.G1030D 0.24 tolerated(0.11) benign(0.004) TCGA-G4-6320-01 3 53529174 53529174 C T CACNA1D 5'UTR 0.34 TCGA-G4-6320-01 3 53857409 53857409 G A CHDH Silent p.A209A 0.18 TCGA-G4-6320-01 3 58134479 58134479 G A FLNB Silent p.S2028S 0.10 TCGA-G4-6320-01 3 58853638 58853638 G A C3orf67 Missense_Mutation p.P222L 0.16 tolerated(0.35) probably_damaging(0.998) TCGA-G4-6320-01 3 64582636 64582636 C T ADAMTS9 Missense_Mutation p.R1350Q 0.21 tolerated(0.13) possibly_damaging(0.821) TCGA-G4-6320-01 3 65346709 65346709 G A MAGI1 Intron 0.25 TCGA-G4-6320-01 3 68593863 68593863 A - FAM19A1 3'UTR 0.21 TCGA-G4-6320-01 3 69112220 69112220 C - UBA3 Frame_Shift_Del p.T203Qfs*10 0.18 TCGA-G4-6320-01 3 74418391 74418391 C A CNTN3 Missense_Mutation p.A299S 0.23 deleterious(0) possibly_damaging(0.677) TCGA-G4-6320-01 3 7620646 7620646 G T GRM7 Nonsense_Mutation p.E685* 0.30 TCGA-G4-6320-01 3 7721969 7721969 C T GRM7 Silent p.N895N 0.20 TCGA-G4-6320-01 3 78656161 78656161 G A ROBO1 Missense_Mutation p.A1489V 0.05 tolerated_low_confidence(0.05) benign(0.174) TCGA-G4-6320-01 3 81635270 81635270 G T GBE1 Silent p.A436A 0.32 TCGA-G4-6320-01 3 93629481 93629481 G T PROS1 Missense_Mutation p.L110I 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6320-01 3 98110063 98110063 A G OR5K3 Missense_Mutation p.Y185C 0.12 deleterious(0.02) benign(0.111) TCGA-G4-6320-01 4 100140341 100140341 G A ADH6 5'UTR 0.28 TCGA-G4-6320-01 4 1018979 1018979 G A FGFRL1 Silent p.P453P 0.25 TCGA-G4-6320-01 4 102015041 102015041 C G PPP3CA Missense_Mutation p.G225A 0.41 deleterious(0.02) possibly_damaging(0.716) TCGA-G4-6320-01 4 104640664 104640664 C T TACR3 Missense_Mutation p.A57T 0.45 tolerated_low_confidence(0.32) benign(0) TCGA-G4-6320-01 4 110605679 110605679 G - CCDC109B Frame_Shift_Del p.G232Vfs*37 0.24 TCGA-G4-6320-01 4 110765415 110765415 A G RRH 3'UTR 0.12 TCGA-G4-6320-01 4 114302640 114302640 G T ANK2 3'UTR 0.52 TCGA-G4-6320-01 4 1245927 1245927 G A CTBP1 5'Flank 0.29 TCGA-G4-6320-01 4 126411326 126411326 C T FAT4 Missense_Mutation p.T4450I 0.06 benign(0.197) TCGA-G4-6320-01 4 134073279 134073279 G T PCDH10 Missense_Mutation p.D662Y 0.40 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 4 134084243 134084243 G A PCDH10 Missense_Mutation p.R970H 0.29 tolerated(0.07) probably_damaging(0.996) TCGA-G4-6320-01 4 13601068 13601068 T C BOD1L1 Missense_Mutation p.T2486A 0.32 benign(0.004) TCGA-G4-6320-01 4 1369191 1369191 G A UVSSA Missense_Mutation p.C443Y 0.29 tolerated(0.05) benign(0.001) TCGA-G4-6320-01 4 1389002 1389002 C T CRIPAK Nonsense_Mutation p.R235* 0.82 TCGA-G4-6320-01 4 140213714 140213714 C T NDUFC1 Missense_Mutation p.G74E 0.38 deleterious(0.02) possibly_damaging(0.664) TCGA-G4-6320-01 4 15009040 15009040 G A CPEB2 Missense_Mutation p.G592R 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-G4-6320-01 4 151504586 151504586 G A MAB21L2 Silent p.L135L 0.21 TCGA-G4-6320-01 4 152570623 152570623 G A FAM160A1 Missense_Mutation p.R477Q 0.17 tolerated(0.79) benign(0.001) TCGA-G4-6320-01 4 155720620 155720620 G A RBM46 Missense_Mutation p.A436T 0.17 tolerated(0.21) benign(0.002) TCGA-G4-6320-01 4 156136482 156136482 A C NPY2R 3'UTR 0.34 TCGA-G4-6320-01 4 15691305 15691305 C T FAM200B 3'Flank 0.26 TCGA-G4-6320-01 4 167022090 167022090 T A TLL1 3'UTR 0.35 TCGA-G4-6320-01 4 170043272 170043272 C T SH3RF1 Missense_Mutation p.R442Q 0.14 deleterious(0.04) possibly_damaging(0.905) TCGA-G4-6320-01 4 175180931 175180931 G A FBXO8 Silent p.N125N 0.40 TCGA-G4-6320-01 4 184129152 184129152 G T WWC2 Missense_Mutation p.Q96H 0.13 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 4 184931917 184931917 G T STOX2 Missense_Mutation p.Q642H 0.41 deleterious_low_confidence(0.04) benign(0.02) TCGA-G4-6320-01 4 189063558 189063558 C T TRIML1 Silent p.T219T 0.09 TCGA-G4-6320-01 4 1956917 1956917 G A WHSC1 Missense_Mutation p.V790I 0.05 tolerated(0.1) benign(0.148) TCGA-G4-6320-01 4 22444479 22444479 C T GPR125 Silent p.P238P 0.20 TCGA-G4-6320-01 4 24577996 24577996 C T DHX15 Missense_Mutation p.R126Q 0.05 tolerated(0.27) benign(0.006) TCGA-G4-6320-01 4 2833376 2833376 C T SH3BP2 Silent p.G497G 0.23 TCGA-G4-6320-01 4 2835424 2835424 G A SH3BP2 Missense_Mutation p.D574N 0.29 deleterious_low_confidence(0.04) benign(0.073) TCGA-G4-6320-01 4 2916624 2916624 C T ADD1 Missense_Mutation p.T571M 0.21 deleterious(0.03) probably_damaging(0.981) TCGA-G4-6320-01 4 2944026 2944026 G A NOP14 Silent p.L648L 0.20 TCGA-G4-6320-01 4 3514639 3514639 G A LRPAP1 3'UTR 0.15 TCGA-G4-6320-01 4 36152542 36152542 C A ARAP2 Missense_Mutation p.E959D 0.07 tolerated(0.21) benign(0.008) TCGA-G4-6320-01 4 36230729 36230729 A T ARAP2 Missense_Mutation p.L127H 0.40 tolerated_low_confidence(0.17) benign(0.285) TCGA-G4-6320-01 4 44624415 44624415 C T YIPF7 3'UTR 0.28 TCGA-G4-6320-01 4 47880585 47880585 C A NFXL1 Missense_Mutation p.C679F 0.10 deleterious(0) probably_damaging(0.935) TCGA-G4-6320-01 4 52869469 52869469 G A LRRC66 Nonsense_Mutation p.Q196* 0.43 TCGA-G4-6320-01 4 5418605 5418605 C T STK32B Missense_Mutation p.T169M 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 4 5806536 5806536 C T EVC Silent p.G843G 0.36 TCGA-G4-6320-01 4 66467905 66467905 C A EPHA5 Missense_Mutation p.G122C 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 4 71508998 71508998 A G ENAM Missense_Mutation p.T619A 0.16 tolerated(0.24) benign(0.044) TCGA-G4-6320-01 4 74347521 74347521 T - AFM Frame_Shift_Del p.F12Sfs*5 0.14 TCGA-G4-6320-01 4 74864242 74864242 G A CXCL5 Silent p.C19C 0.08 TCGA-G4-6320-01 4 77116909 77116909 G T SCARB2 Missense_Mutation p.L76I 0.20 deleterious(0.03) possibly_damaging(0.838) TCGA-G4-6320-01 4 81123201 81123201 C T PRDM8 Silent p.G195G 0.18 TCGA-G4-6320-01 4 85611722 85611722 C T WDFY3 Silent p.T3100T 0.21 TCGA-G4-6320-01 4 87770010 87770010 C A SLC10A6 Missense_Mutation p.A87S 0.21 tolerated(0.98) possibly_damaging(0.656) TCGA-G4-6320-01 4 88036104 88036104 C T AFF1 Missense_Mutation p.H707Y 0.20 tolerated(0.24) unknown(0) TCGA-G4-6320-01 4 90034445 90034445 A G TIGD2 Missense_Mutation p.K107R 0.25 tolerated(0.32) benign(0.026) TCGA-G4-6320-01 4 96051097 96051097 C T BMPR1B Missense_Mutation p.R254C 0.30 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 4 96762352 96762352 G T PDHA2 Missense_Mutation p.A351S 0.07 deleterious(0.02) possibly_damaging(0.497) TCGA-G4-6320-01 4 9785349 9785349 G C DRD5 3'UTR 0.09 TCGA-G4-6320-01 5 10250296 10250296 C T CCT5 5'UTR 0.20 TCGA-G4-6320-01 5 109125221 109125221 G A MAN2A1 Missense_Mutation p.E646K 0.05 tolerated(0.48) benign(0.002) TCGA-G4-6320-01 5 10988253 10988253 C T CTNND2 Missense_Mutation p.E1105K 0.12 deleterious(0.01) possibly_damaging(0.664) TCGA-G4-6320-01 5 111754750 111754750 G A EPB41L4A 5'UTR 0.21 TCGA-G4-6320-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.41 TCGA-G4-6320-01 5 112175596 112175596 A - APC Frame_Shift_Del p.S1436Vfs*37 0.29 TCGA-G4-6320-01 5 115152063 115152063 G A CDO1 Missense_Mutation p.T11I 0.20 deleterious(0) benign(0.129) TCGA-G4-6320-01 5 125822629 125822629 C T GRAMD3 Silent p.L390L 0.12 TCGA-G4-6320-01 5 131730087 131730087 T A SLC22A5 3'UTR 0.22 TCGA-G4-6320-01 5 136969741 136969741 G A KLHL3 Missense_Mutation p.R479C 0.24 tolerated(0.08) probably_damaging(0.979) TCGA-G4-6320-01 5 137230192 137230192 A G PKD2L2 Missense_Mutation p.T140A 0.15 deleterious(0) probably_damaging(0.991) TCGA-G4-6320-01 5 137257446 137257446 G A PKD2L2 Splice_Site p.X483_splice 0.06 TCGA-G4-6320-01 5 137519776 137519776 G A KIF20A Missense_Mutation p.R445H 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 5 138718963 138718963 C T SLC23A1 5'UTR 0.19 TCGA-G4-6320-01 5 138729695 138729695 G A PROB1 Missense_Mutation p.P359L 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.745) TCGA-G4-6320-01 5 139217257 139217257 C T PSD2 Silent p.N571N 0.27 TCGA-G4-6320-01 5 140021416 140021416 A G TMCO6 Intron 0.09 TCGA-G4-6320-01 5 140188073 140188073 C T PCDHA4 Missense_Mutation p.S434L 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.783) TCGA-G4-6320-01 5 140214077 140214077 G A PCDHA7 Missense_Mutation p.E37K 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G4-6320-01 5 140216214 140216214 C A PCDHA7 Nonsense_Mutation p.S749* 0.31 TCGA-G4-6320-01 5 140232399 140232399 C A PCDHA9 Intron 0.23 TCGA-G4-6320-01 5 140605731 140605731 T C PCDHB14 3'UTR 0.22 TCGA-G4-6320-01 5 140724649 140724649 C T PCDHGA3 Missense_Mutation p.T350M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-G4-6320-01 5 140751485 140751485 C T PCDHGB3 Silent p.S508S 0.29 TCGA-G4-6320-01 5 140764036 140764036 C T PCDHGA7 Nonsense_Mutation p.Q524* 0.06 TCGA-G4-6320-01 5 140789316 140789316 C T PCDHGB6 Missense_Mutation p.A516V 0.28 deleterious(0.01) probably_damaging(0.918) TCGA-G4-6320-01 5 140856968 140856968 G A PCDHGC3 Missense_Mutation p.A429T 0.32 deleterious(0.02) probably_damaging(1) TCGA-G4-6320-01 5 141035786 141035786 G A ARAP3 Missense_Mutation p.R1283C 0.24 deleterious(0) probably_damaging(0.996) TCGA-G4-6320-01 5 141318271 141318271 C - KIAA0141 Frame_Shift_Del p.P500Hfs*11 0.26 TCGA-G4-6320-01 5 141336806 141336806 C A PCDH12 Missense_Mutation p.R204M 0.07 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 5 146619156 146619156 G A STK32A 5'UTR 0.20 TCGA-G4-6320-01 5 14681618 14681618 C T FAM105B Missense_Mutation p.R124C 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 5 148407016 148407016 C T SH3TC2 Missense_Mutation p.C760Y 0.29 tolerated(0.05) probably_damaging(0.999) TCGA-G4-6320-01 5 148407825 148407825 G A SH3TC2 Silent p.S490S 0.11 TCGA-G4-6320-01 5 150923390 150923390 G A FAT2 Missense_Mutation p.S2433L 0.06 probably_damaging(1) TCGA-G4-6320-01 5 151783954 151783954 G T NMUR2 Missense_Mutation p.L241I 0.10 tolerated(0.06) benign(0.14) TCGA-G4-6320-01 5 153709265 153709265 G A GALNT10 Missense_Mutation p.E179K 0.20 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 5 154193506 154193506 C T LARP1 Silent p.G970G 0.13 TCGA-G4-6320-01 5 156924067 156924067 G C ADAM19 Missense_Mutation p.Q477E 0.36 tolerated(1) benign(0.205) TCGA-G4-6320-01 5 161580117 161580117 C T GABRG2 Missense_Mutation p.R431C 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-G4-6320-01 5 16694595 16694595 G A MYO10 Silent p.L1229L 0.30 TCGA-G4-6320-01 5 16694613 16694613 C T MYO10 Missense_Mutation p.G1223R 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 5 167673790 167673790 G A TENM2 Missense_Mutation p.R1949H 0.42 tolerated(0.06) benign(0.117) TCGA-G4-6320-01 5 171766488 171766488 G A SH3PXD2B Missense_Mutation p.R541W 0.13 deleterious(0) possibly_damaging(0.724) TCGA-G4-6320-01 5 176793219 176793219 C T RGS14 Missense_Mutation p.R37C 0.27 deleterious(0.04) probably_damaging(0.931) TCGA-G4-6320-01 5 178459702 178459702 G T ZNF879 Missense_Mutation p.L251F 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-G4-6320-01 5 178699950 178699950 G A ADAMTS2 Missense_Mutation p.T217M 0.22 tolerated(0.09) benign(0.223) TCGA-G4-6320-01 5 180047888 180047888 C T FLT4 Missense_Mutation p.V763M 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-G4-6320-01 5 180058747 180058748 - G FLT4 Frame_Shift_Ins p.T31Dfs*15 0.19 TCGA-G4-6320-01 5 24488033 24488033 A G CDH10 Silent p.P702P 0.43 TCGA-G4-6320-01 5 31799291 31799291 G T PDZD2 5'UTR 0.40 TCGA-G4-6320-01 5 35991364 35991364 G A UGT3A1 5'UTR 0.16 TCGA-G4-6320-01 5 50137809 50137809 C A PARP8 Missense_Mutation p.D824E 0.10 deleterious(0) probably_damaging(0.981) TCGA-G4-6320-01 5 54281360 54281360 T A ESM1 5'UTR 0.45 TCGA-G4-6320-01 5 71756328 71756328 G A ZNF366 Silent p.S332S 0.16 TCGA-G4-6320-01 5 71756846 71756846 C T ZNF366 Missense_Mutation p.V160M 0.26 tolerated_low_confidence(0.45) benign(0.005) TCGA-G4-6320-01 5 77771419 77771419 C T SCAMP1 Silent p.T315T 0.23 TCGA-G4-6320-01 5 78596602 78596602 G A JMY Silent p.L599L 0.23 TCGA-G4-6320-01 5 78944488 78944488 C T PAPD4 Silent p.N290N 0.23 TCGA-G4-6320-01 5 82808252 82808252 A - VCAN Intron 0.15 TCGA-G4-6320-01 5 82816224 82816224 C T VCAN Missense_Mutation p.T700I 0.23 tolerated(0.09) benign(0.03) TCGA-G4-6320-01 5 87492045 87492045 A G TMEM161B Missense_Mutation p.Y483H 0.16 tolerated(0.4) probably_damaging(0.999) TCGA-G4-6320-01 5 90106342 90106342 T - GPR98 Frame_Shift_Del p.Y5091Tfs*7 0.20 TCGA-G4-6320-01 5 9122871 9122871 C T SEMA5A Missense_Mutation p.V560M 0.15 tolerated(0.16) benign(0.232) TCGA-G4-6320-01 5 9122885 9122885 G A SEMA5A Missense_Mutation p.T555I 0.27 tolerated(0.25) benign(0.036) TCGA-G4-6320-01 5 94785957 94785957 C T FAM81B Missense_Mutation p.R444C 0.27 tolerated(0.05) probably_damaging(1) TCGA-G4-6320-01 5 94803596 94803596 C T TTC37 Missense_Mutation p.A1532T 0.19 deleterious(0.01) possibly_damaging(0.774) TCGA-G4-6320-01 5 95242350 95242350 G A ELL2 Silent p.Y206Y 0.05 TCGA-G4-6320-01 5 95729017 95729017 G A PCSK1 Silent p.S650S 0.42 TCGA-G4-6320-01 6 100838896 100838896 G A SIM1 Nonsense_Mutation p.R548* 0.17 TCGA-G4-6320-01 6 107035597 107035597 C T RTN4IP1 Missense_Mutation p.G316D 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 6 109190173 109190173 G A ARMC2 Silent p.P146P 0.10 TCGA-G4-6320-01 6 110112724 110112724 T A FIG4 Missense_Mutation p.S776T 0.26 tolerated(0.14) benign(0.074) TCGA-G4-6320-01 6 112397206 112397206 T - TUBE1 Frame_Shift_Del p.K249Sfs*10 0.18 TCGA-G4-6320-01 6 117128327 117128327 G A GPRC6A Missense_Mutation p.R181C 0.06 deleterious(0) probably_damaging(0.988) TCGA-G4-6320-01 6 117869180 117869180 G A DCBLD1 Intron 0.16 TCGA-G4-6320-01 6 12161760 12161760 C T HIVEP1 Silent p.D2192D 0.26 TCGA-G4-6320-01 6 125619890 125619890 G A HDDC2 Silent p.I93I 0.13 TCGA-G4-6320-01 6 127796632 127796632 C T SOGA3 Missense_Mutation p.V847M 0.27 deleterious(0.04) benign(0.372) TCGA-G4-6320-01 6 127804117 127804117 T - SOGA3 Frame_Shift_Del p.R500Efs*26 0.23 TCGA-G4-6320-01 6 132179828 132179828 A - ENPP1 Frame_Shift_Del p.N247Tfs*2 0.13 TCGA-G4-6320-01 6 144164603 144164603 C T LTV1 5'UTR 0.24 TCGA-G4-6320-01 6 145946619 145946619 A G EPM2A 3'UTR 0.35 TCGA-G4-6320-01 6 146719963 146719963 C T GRM1 Silent p.A596A 0.20 TCGA-G4-6320-01 6 146720504 146720504 G A GRM1 Missense_Mutation p.V777M 0.24 deleterious(0) probably_damaging(0.997) TCGA-G4-6320-01 6 151670072 151670072 A G AKAP12 Silent p.K182K 0.49 TCGA-G4-6320-01 6 151936662 151936662 A - CCDC170 Frame_Shift_Del p.K600Sfs*26 0.20 TCGA-G4-6320-01 6 152497533 152497533 C T SYNE1 Missense_Mutation p.A7875T 0.22 possibly_damaging(0.838) TCGA-G4-6320-01 6 153311175 153311175 C T MTRF1L Missense_Mutation p.R333Q 0.20 deleterious(0) probably_damaging(0.977) TCGA-G4-6320-01 6 159029764 159029764 C T TMEM181 Missense_Mutation p.T430M 0.27 deleterious(0.04) probably_damaging(0.993) TCGA-G4-6320-01 6 159660688 159660689 - A FNDC1 Frame_Shift_Ins p.T1443Nfs*81 0.17 TCGA-G4-6320-01 6 160482842 160482842 T C IGF2R Missense_Mutation p.V1155A 0.19 deleterious(0) probably_damaging(0.963) TCGA-G4-6320-01 6 161574408 161574408 C T AGPAT4 Missense_Mutation p.A212T 0.09 tolerated(1) benign(0.364) TCGA-G4-6320-01 6 161771027 161771027 C T PARK2 3'UTR 0.26 TCGA-G4-6320-01 6 167550828 167550828 G A CCR6 Silent p.S370S 0.22 TCGA-G4-6320-01 6 168439394 168439394 C T KIF25 Missense_Mutation p.A160V 0.28 deleterious(0.04) benign(0.004) TCGA-G4-6320-01 6 17837308 17837308 C - KIF13A Frame_Shift_Del p.G319Afs*7 0.24 TCGA-G4-6320-01 6 24588881 24588881 C G KIAA0319 Missense_Mutation p.A312P 0.24 tolerated(0.17) benign(0.001) TCGA-G4-6320-01 6 25776993 25776993 G A SLC17A4 Intron 0.25 TCGA-G4-6320-01 6 26032185 26032185 C T HIST1H3B Missense_Mutation p.G35D 0.24 deleterious_low_confidence(0.01) benign(0.001) TCGA-G4-6320-01 6 29577143 29577144 - G GABBR1 Frame_Shift_Ins p.A575Sfs*2 0.29 TCGA-G4-6320-01 6 30303740 30303740 C T TRIM39 Silent p.F256F 0.19 TCGA-G4-6320-01 6 30558401 30558401 G A ABCF1 Missense_Mutation p.D821N 0.22 tolerated(0.07) benign(0.044) TCGA-G4-6320-01 6 30673311 30673311 G A MDC1 Nonsense_Mutation p.R1217* 0.44 TCGA-G4-6320-01 6 3078074 3078074 G A RIPK1 Missense_Mutation p.V76M 0.14 deleterious(0.03) possibly_damaging(0.512) TCGA-G4-6320-01 6 3154134 3154134 C T TUBB2A Missense_Mutation p.G434E 0.40 tolerated_low_confidence(0.63) unknown(0) TCGA-G4-6320-01 6 31948504 31948504 G A STK19 Silent p.R329R 0.12 TCGA-G4-6320-01 6 31963294 31963294 C T C4A Silent p.H1044H 0.26 TCGA-G4-6320-01 6 3224928 3224929 - C TUBB2B 3'UTR 0.24 TCGA-G4-6320-01 6 32714133 32714133 C T HLA-DQA2 Missense_Mutation p.R244C 0.39 tolerated(0.09) benign(0.052) TCGA-G4-6320-01 6 33284126 33284126 G A ZBTB22 Missense_Mutation p.R190C 0.27 deleterious(0.05) probably_damaging(0.99) TCGA-G4-6320-01 6 33368252 33368252 G T KIFC1 Intron 0.20 TCGA-G4-6320-01 6 33651082 33651082 G A ITPR3 Missense_Mutation p.A1566T 0.25 tolerated(0.44) benign(0.005) TCGA-G4-6320-01 6 34508823 34508823 A G SPDEF Missense_Mutation p.F191S 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-G4-6320-01 6 35051002 35051002 G A ANKS1A Missense_Mutation p.R969Q 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6320-01 6 35260421 35260421 A G ZNF76 Missense_Mutation p.H341R 0.24 tolerated(0.4) benign(0.014) TCGA-G4-6320-01 6 35444213 35444213 C T TEAD3 Splice_Site p.X198_splice 0.36 TCGA-G4-6320-01 6 36922525 36922525 C T PI16 5'UTR 0.25 TCGA-G4-6320-01 6 37616839 37616839 C T MDGA1 Missense_Mutation p.V605I 0.41 tolerated(0.35) benign(0.058) TCGA-G4-6320-01 6 39859193 39859193 G A DAAM2 Missense_Mutation p.R741H 0.22 deleterious(0) probably_damaging(0.983) TCGA-G4-6320-01 6 43166484 43166484 G A CUL9 Missense_Mutation p.V981M 0.25 tolerated(0.18) benign(0.004) TCGA-G4-6320-01 6 43237493 43237493 C T TTBK1 Intron 0.17 TCGA-G4-6320-01 6 44121574 44121574 C T TMEM63B Missense_Mutation p.R702C 0.25 deleterious(0) probably_damaging(0.998) TCGA-G4-6320-01 6 44219828 44219828 G A HSP90AB1 Missense_Mutation p.E519K 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 6 44275060 44275060 G A AARS2 Silent p.R322R 0.20 TCGA-G4-6320-01 6 44336157 44336157 G A SPATS1 Missense_Mutation p.D206N 0.17 deleterious(0.01) probably_damaging(1) TCGA-G4-6320-01 6 46761165 46761166 - T MEP1A Frame_Shift_Ins p.T13Yfs*13 0.14 TCGA-G4-6320-01 6 50011381 50011381 G T DEFB112 Nonsense_Mutation p.C83* 0.17 TCGA-G4-6320-01 6 56033012 56033012 A C COL21A1 Missense_Mutation p.I370M 0.27 deleterious(0.03) benign(0.403) TCGA-G4-6320-01 6 56325024 56325024 C T DST Missense_Mutation p.R5053Q 0.20 probably_damaging(0.999) TCGA-G4-6320-01 6 57037486 57037486 G A BAG2 5'UTR 0.27 TCGA-G4-6320-01 6 65303143 65303143 G T EYS Silent p.P1248P 0.27 TCGA-G4-6320-01 6 65532542 65532542 A G EYS Splice_Site p.X1055_splice 0.18 TCGA-G4-6320-01 6 82927692 82927695 TCTT - IBTK Frame_Shift_Del p.K470Vfs*24 0.15 TCGA-G4-6320-01 6 86201721 86201721 C T NT5E Nonsense_Mutation p.R463* 0.24 TCGA-G4-6320-01 6 87795514 87795514 G A CGA Missense_Mutation p.T104M 0.18 deleterious(0) probably_damaging(0.996) TCGA-G4-6320-01 6 89890065 89890065 G A GABRR1 Silent p.A364A 0.35 TCGA-G4-6320-01 6 89890148 89890148 G A GABRR1 Missense_Mutation p.R337C 0.33 tolerated(0.05) probably_damaging(0.996) TCGA-G4-6320-01 6 90434986 90434986 G A MDN1 Nonsense_Mutation p.Q1868* 0.24 TCGA-G4-6320-01 6 96657758 96657758 C - FUT9 3'UTR 0.16 TCGA-G4-6320-01 7 100276093 100276093 G A GNB2 Missense_Mutation p.D258N 0.14 deleterious(0.01) possibly_damaging(0.605) TCGA-G4-6320-01 7 100457591 100457591 G A SLC12A9 Silent p.A354A 0.13 TCGA-G4-6320-01 7 100486411 100486411 G T UFSP1 3'UTR 0.11 TCGA-G4-6320-01 7 100730794 100730794 C T TRIM56 Silent p.P67P 0.21 TCGA-G4-6320-01 7 106508336 106508336 C T PIK3CG Silent p.Y110Y 0.13 TCGA-G4-6320-01 7 108204998 108204998 A - THAP5 Frame_Shift_Del p.F275Lfs*37 0.11 TCGA-G4-6320-01 7 111428719 111428719 T A DOCK4 Missense_Mutation p.I1134F 0.13 deleterious(0.01) benign(0.068) TCGA-G4-6320-01 7 111629155 111629155 G A DOCK4 Missense_Mutation p.R127W 0.20 deleterious(0) probably_damaging(0.915) TCGA-G4-6320-01 7 1131950 1131950 G A GPER1 Missense_Mutation p.V196M 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-G4-6320-01 7 114139115 114139115 A G FOXP2 Intron 0.10 TCGA-G4-6320-01 7 11675889 11675889 C T THSD7A Missense_Mutation p.R297H 0.63 tolerated(0.08) benign(0.021) TCGA-G4-6320-01 7 116960762 116960762 G A WNT2 Nonsense_Mutation p.R57* 0.19 TCGA-G4-6320-01 7 117307186 117307186 G A CFTR 3'UTR 0.17 TCGA-G4-6320-01 7 120387852 120387852 C T KCND2 Silent p.D611D 0.25 TCGA-G4-6320-01 7 123332590 123332590 C T WASL Silent p.P386P 0.11 TCGA-G4-6320-01 7 12443481 12443481 G A VWDE 5'UTR 0.04 TCGA-G4-6320-01 7 127569329 127569329 G A SND1 Missense_Mutation p.R539H 0.11 deleterious(0.01) probably_damaging(1) TCGA-G4-6320-01 7 128494546 128494546 C T FLNC Silent p.G2269G 0.16 TCGA-G4-6320-01 7 128784897 128784899 TCT - TSPAN33 In_Frame_Del p.F29del 0.13 TCGA-G4-6320-01 7 128852115 128852115 G A SMO Silent p.A729A 0.14 TCGA-G4-6320-01 7 130021665 130021665 C A CPA1 Silent p.T114T 0.39 TCGA-G4-6320-01 7 132959842 132959842 G T EXOC4 Missense_Mutation p.Q64H 0.14 tolerated(0.06) probably_damaging(0.958) TCGA-G4-6320-01 7 135312732 135312732 T C NUP205 Missense_Mutation p.M1602T 0.13 tolerated(0.29) benign(0) TCGA-G4-6320-01 7 135377114 135377114 G A SLC13A4 Missense_Mutation p.R393W 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 7 135406170 135406170 C T SLC13A4 Silent p.P67P 0.17 TCGA-G4-6320-01 7 139225225 139225225 A G CLEC2L Missense_Mutation p.K142E 0.19 tolerated(0.07) possibly_damaging(0.477) TCGA-G4-6320-01 7 139796822 139796822 G A KDM7A Missense_Mutation p.S681F 0.12 deleterious(0.04) possibly_damaging(0.643) TCGA-G4-6320-01 7 143421960 143421960 C T FAM115C 3'UTR 0.24 TCGA-G4-6320-01 7 143826804 143826804 C A OR2A14 Missense_Mutation p.A200E 0.14 deleterious(0) possibly_damaging(0.828) TCGA-G4-6320-01 7 148511127 148511127 G A EZH2 Missense_Mutation p.T592I 0.05 deleterious(0) benign(0.352) TCGA-G4-6320-01 7 148876307 148876307 C T ZNF398 Missense_Mutation p.A448V 0.25 tolerated(0.92) possibly_damaging(0.458) TCGA-G4-6320-01 7 148921263 148921263 C T ZNF282 Missense_Mutation p.R514C 0.20 deleterious(0.05) possibly_damaging(0.63) TCGA-G4-6320-01 7 148947565 148947565 G A ZNF212 Missense_Mutation p.V114M 0.19 tolerated(1) benign(0.017) TCGA-G4-6320-01 7 148947624 148947624 G - ZNF212 Frame_Shift_Del p.E135Rfs*35 0.15 TCGA-G4-6320-01 7 148963676 148963676 T G ZNF783 Missense_Mutation p.L92R 0.11 deleterious(0) probably_damaging(0.995) TCGA-G4-6320-01 7 149427285 149427285 G - KRBA1 Frame_Shift_Del p.I621Sfs*4 0.09 TCGA-G4-6320-01 7 149462040 149462040 G A ZNF467 Silent p.C517C 0.17 TCGA-G4-6320-01 7 149474396 149474396 G T ZNF467 5'Flank 0.13 TCGA-G4-6320-01 7 149481949 149481949 G A SSPO RNA 0.13 TCGA-G4-6320-01 7 149509009 149509009 G A SSPO RNA 0.10 TCGA-G4-6320-01 7 150171508 150171508 C A GIMAP8 Missense_Mutation p.T364N 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 7 154862765 154862765 G A HTR5A-AS1 Silent p.A83A 0.17 TCGA-G4-6320-01 7 155094520 155094520 C T INSIG1 Silent p.G256G 0.09 TCGA-G4-6320-01 7 155599121 155599121 C T SHH Missense_Mutation p.R144H 0.62 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 7 156798259 156798259 G A MNX1 Silent p.D387D 0.20 TCGA-G4-6320-01 7 17379095 17379098 ATTT - AHR Frame_Shift_Del p.D549Vfs*28 0.19 TCGA-G4-6320-01 7 19184456 19184456 C T FERD3L 3'UTR 0.17 TCGA-G4-6320-01 7 21640682 21640682 G T DNAH11 Missense_Mutation p.V1104L 0.13 possibly_damaging(0.596) TCGA-G4-6320-01 7 21640762 21640762 G T DNAH11 Missense_Mutation p.M1130I 0.20 benign(0.167) TCGA-G4-6320-01 7 22161965 22161965 G T RAPGEF5 3'UTR 0.16 TCGA-G4-6320-01 7 28995261 28995261 C T AC005013.5 5'Flank 0.19 TCGA-G4-6320-01 7 28995330 28995330 T C AC005013.5 5'Flank 0.50 TCGA-G4-6320-01 7 30486626 30486626 C T NOD1 Missense_Mutation p.V776I 0.14 tolerated(0.48) benign(0.002) TCGA-G4-6320-01 7 31003731 31003731 G A GHRHR Silent p.P16P 0.16 TCGA-G4-6320-01 7 33573579 33573579 C T BBS9 Missense_Mutation p.T771M 0.21 tolerated(0.29) benign(0.144) TCGA-G4-6320-01 7 37955765 37955765 G A SFRP4 Silent p.C125C 0.09 TCGA-G4-6320-01 7 43484122 43484122 C T HECW1 Missense_Mutation p.P451S 0.14 tolerated_low_confidence(0.13) benign(0.002) TCGA-G4-6320-01 7 44009352 44009352 C T POLR2J4 Intron 0.17 TCGA-G4-6320-01 7 44805060 44805060 C T ZMIZ2 Silent p.P708P 0.12 TCGA-G4-6320-01 7 45010231 45010231 C T MYO1G Missense_Mutation p.V393M 0.11 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 7 45124559 45124559 C T NACAD Missense_Mutation p.G407E 0.15 tolerated(0.08) benign(0.437) TCGA-G4-6320-01 7 47344502 47344502 G A TNS3 Missense_Mutation p.T917M 0.15 deleterious(0.03) benign(0.34) TCGA-G4-6320-01 7 47408687 47408687 G T TNS3 Nonsense_Mutation p.S519* 0.09 TCGA-G4-6320-01 7 4876090 4876090 C T RADIL Missense_Mutation p.A228T 0.35 tolerated(0.43) benign(0.037) TCGA-G4-6320-01 7 4901338 4901338 G A PAPOLB Missense_Mutation p.T34M 0.26 tolerated(0.24) possibly_damaging(0.801) TCGA-G4-6320-01 7 4901397 4901397 C T PAPOLB Silent p.A14A 0.11 TCGA-G4-6320-01 7 4955654 4955654 G A MMD2 Missense_Mutation p.A116V 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 7 4959912 4959912 C T MMD2 Silent p.S60S 0.13 TCGA-G4-6320-01 7 5352539 5352539 G T TNRC18 Silent p.S2661S 0.14 TCGA-G4-6320-01 7 5410758 5410758 C T TNRC18 Missense_Mutation p.R1156Q 0.18 possibly_damaging(0.794) TCGA-G4-6320-01 7 5922207 5922207 C T OCM Missense_Mutation p.R49W 0.04 deleterious(0.04) possibly_damaging(0.773) TCGA-G4-6320-01 7 64168446 64168446 T C ZNF107 Silent p.A588A 0.15 TCGA-G4-6320-01 7 6547989 6547989 C T GRID2IP Missense_Mutation p.R724Q 0.17 tolerated(0.41) possibly_damaging(0.567) TCGA-G4-6320-01 7 66274328 66274328 A G KCTD7 3'UTR 0.09 TCGA-G4-6320-01 7 72419206 72419206 C T POM121 3'UTR 0.10 TCGA-G4-6320-01 7 72988371 72988371 G A TBL2 Missense_Mutation p.R115C 0.12 deleterious(0.02) possibly_damaging(0.565) TCGA-G4-6320-01 7 75182755 75182755 G A HIP1 Silent p.G764G 0.17 TCGA-G4-6320-01 7 75609900 75609900 C - POR Intron 0.13 TCGA-G4-6320-01 7 75625846 75625846 C A STYXL1 Silent p.L294L 0.08 TCGA-G4-6320-01 7 76619681 76619681 T G UPK3B Intron 0.04 TCGA-G4-6320-01 7 78150767 78150767 T C MAGI2 Missense_Mutation p.N245S 0.15 tolerated(0.8) probably_damaging(0.993) TCGA-G4-6320-01 7 84636203 84636203 G T SEMA3D Nonsense_Mutation p.S608* 0.60 TCGA-G4-6320-01 7 87537436 87537436 G A DBF4 Silent p.A661A 0.16 TCGA-G4-6320-01 7 91724467 91724467 C T AKAP9 Missense_Mutation p.R3237W 0.08 probably_damaging(0.96) TCGA-G4-6320-01 7 92935292 92935294 AGA - CCDC132 In_Frame_Del p.E536del 0.19 TCGA-G4-6320-01 7 97851001 97851001 C T TECPR1 Silent p.Q1043Q 0.26 TCGA-G4-6320-01 7 99042419 99042419 C T CPSF4 Silent p.G37G 0.06 TCGA-G4-6320-01 7 99057751 99057751 G A PTCD1 Missense_Mutation p.R27W 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6320-01 7 99702556 99702556 C T AP4M1 Silent p.S222S 0.12 TCGA-G4-6320-01 7 99798930 99798931 - A STAG3 Frame_Shift_Ins p.L727Tfs*36 0.08 TCGA-G4-6320-01 7 99998859 99998859 T C ZCWPW1 Silent p.S575S 0.13 TCGA-G4-6320-01 8 100160141 100160141 G A VPS13B Missense_Mutation p.R639Q 0.35 deleterious(0) possibly_damaging(0.885) TCGA-G4-6320-01 8 101153384 101153384 G T FBXO43 Silent p.P366P 0.17 TCGA-G4-6320-01 8 101300064 101300064 G T RNF19A Silent p.T113T 0.19 TCGA-G4-6320-01 8 103309196 103309196 C T UBR5 Missense_Mutation p.R1197Q 0.06 deleterious(0) probably_damaging(0.986) TCGA-G4-6320-01 8 10583454 10583454 C T SOX7 Missense_Mutation p.V373M 0.35 deleterious(0) possibly_damaging(0.802) TCGA-G4-6320-01 8 106331166 106331166 C A ZFPM2 5'UTR 0.17 TCGA-G4-6320-01 8 106811005 106811005 C A ZFPM2 Missense_Mutation p.L265M 0.18 deleterious(0) probably_damaging(0.997) TCGA-G4-6320-01 8 116426671 116426671 C T TRPS1 Silent p.V1155V 0.21 TCGA-G4-6320-01 8 117950644 117950644 G A AARD Silent p.P54P 0.31 TCGA-G4-6320-01 8 118825187 118825187 C T EXT1 Missense_Mutation p.R549H 0.22 deleterious(0.01) probably_damaging(1) TCGA-G4-6320-01 8 12043008 12043008 C T FAM86B1 Missense_Mutation p.V223M 0.14 tolerated(0.22) benign(0.025) TCGA-G4-6320-01 8 125464024 125464024 C T TRMT12 Missense_Mutation p.R286W 0.16 deleterious(0) probably_damaging(0.997) TCGA-G4-6320-01 8 12957074 12957074 C T DLC1 Silent p.S924S 0.09 TCGA-G4-6320-01 8 132052163 132052163 C T ADCY8 Silent p.S139S 0.46 TCGA-G4-6320-01 8 134251206 134251206 C T NDRG1 Missense_Mutation p.S367N 0.42 tolerated(0.25) benign(0) TCGA-G4-6320-01 8 141445265 141445265 G A TRAPPC9 Missense_Mutation p.R367W 0.13 deleterious(0) probably_damaging(0.995) TCGA-G4-6320-01 8 141745483 141745483 C T PTK2 Missense_Mutation p.G633S 0.19 tolerated(0.08) possibly_damaging(0.853) TCGA-G4-6320-01 8 142146845 142146845 C A DENND3 Missense_Mutation p.P34T 0.17 deleterious(0) probably_damaging(0.977) TCGA-G4-6320-01 8 143993501 143993501 C A CYP11B2 Missense_Mutation p.K469N 0.05 deleterious(0.04) possibly_damaging(0.521) TCGA-G4-6320-01 8 144457817 144457817 C T RHPN1 Missense_Mutation p.T52M 0.25 deleterious(0) probably_damaging(0.959) TCGA-G4-6320-01 8 144464687 144464687 A T RHPN1 Missense_Mutation p.T627S 0.51 tolerated(0.64) benign(0.004) TCGA-G4-6320-01 8 144900560 144900560 C T PUF60 Missense_Mutation p.V165I 0.17 tolerated(0.44) benign(0.04) TCGA-G4-6320-01 8 145641367 145641367 C T SLC39A4 Missense_Mutation p.V101I 0.25 tolerated(0.1) benign(0.115) TCGA-G4-6320-01 8 146032657 146032657 G - ZNF517 Frame_Shift_Del p.C121Afs*105 0.16 TCGA-G4-6320-01 8 146107422 146107422 G A ZNF250 Silent p.N387N 0.21 TCGA-G4-6320-01 8 15095210 15095210 A T SGCZ 5'UTR 0.33 TCGA-G4-6320-01 8 17871524 17871524 G A PCM1 Missense_Mutation p.E1855K 0.09 tolerated(0.09) benign(0.014) TCGA-G4-6320-01 8 1853830 1853830 C T ARHGEF10 Missense_Mutation p.R639C 0.24 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 8 20107729 20107729 C A LZTS1 Missense_Mutation p.R432M 0.21 deleterious(0.01) possibly_damaging(0.489) TCGA-G4-6320-01 8 21957278 21957278 C T FAM160B2 Silent p.S405S 0.24 TCGA-G4-6320-01 8 22064879 22064879 G A BMP1 Missense_Mutation p.D809N 0.26 deleterious(0.03) possibly_damaging(0.537) TCGA-G4-6320-01 8 23294555 23294555 G A ENTPD4 Silent p.H422H 0.30 TCGA-G4-6320-01 8 24772062 24772062 G A NEFM Silent p.S252S 0.18 TCGA-G4-6320-01 8 24813375 24813375 C T CTD-2168K21.2 5'Flank 0.36 TCGA-G4-6320-01 8 28573612 28573612 G A EXTL3 Silent p.A12A 0.19 TCGA-G4-6320-01 8 28651362 28651362 G A INTS9 Silent p.A333A 0.31 TCGA-G4-6320-01 8 29207734 29207734 C T DUSP4 Missense_Mutation p.R21Q 0.33 tolerated(0.26) benign(0.028) TCGA-G4-6320-01 8 38810153 38810153 G A PLEKHA2 Splice_Site p.X212_splice 0.23 TCGA-G4-6320-01 8 38827285 38827285 C T PLEKHA2 Missense_Mutation p.R421W 0.15 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 8 39847290 39847290 G T IDO2 Silent p.L213L 0.51 TCGA-G4-6320-01 8 48798612 48798612 C - PRKDC Frame_Shift_Del p.E1556Sfs*16 0.15 TCGA-G4-6320-01 8 48849076 48849076 G A PRKDC Missense_Mutation p.P372L 0.23 probably_damaging(1) TCGA-G4-6320-01 8 52321274 52321274 C T PXDNL Missense_Mutation p.M970I 0.11 tolerated(0.05) possibly_damaging(0.708) TCGA-G4-6320-01 8 52321718 52321718 G A PXDNL Silent p.S822S 0.36 TCGA-G4-6320-01 8 52384865 52384865 C A PXDNL Splice_Site p.X232_splice 0.27 TCGA-G4-6320-01 8 53092719 53092719 G A ST18 Silent p.D80D 0.16 TCGA-G4-6320-01 8 55539774 55539774 C A RP1 Nonsense_Mutation p.S1111* 0.42 TCGA-G4-6320-01 8 56436761 56436761 G A XKR4 Missense_Mutation p.R643Q 0.12 deleterious(0.02) probably_damaging(0.978) TCGA-G4-6320-01 8 59058706 59058706 G A FAM110B 5'UTR 0.32 TCGA-G4-6320-01 8 65528577 65528577 C A CYP7B1 Missense_Mutation p.S174I 0.22 deleterious(0.02) possibly_damaging(0.627) TCGA-G4-6320-01 8 68139473 68139473 C A ARFGEF1 Missense_Mutation p.R1272L 0.06 deleterious(0) probably_damaging(0.932) TCGA-G4-6320-01 8 70514036 70514036 C T SULF1 Missense_Mutation p.R345C 0.20 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 8 75227516 75227516 C T JPH1 Missense_Mutation p.R240H 0.25 tolerated(0.08) benign(0.071) TCGA-G4-6320-01 8 86354341 86354341 G A CA3 Missense_Mutation p.R91H 0.19 tolerated(0.14) probably_damaging(0.998) TCGA-G4-6320-01 8 88884172 88884173 - TT DCAF4L2 3'UTR 0.18 TCGA-G4-6320-01 8 91637852 91637852 C T TMEM64 3'UTR 0.38 TCGA-G4-6320-01 8 92114936 92114936 C T LRRC69 Missense_Mutation p.T16M 0.08 deleterious(0.01) probably_damaging(0.927) TCGA-G4-6320-01 8 95504138 95504138 C T KIAA1429 Splice_Site p.X1603_splice 0.25 TCGA-G4-6320-01 8 99608330 99608330 A G STK3 Missense_Mutation p.F279S 0.12 deleterious(0) probably_damaging(0.997) TCGA-G4-6320-01 9 100088949 100088949 C T CCDC180 Silent p.S597S 0.09 TCGA-G4-6320-01 9 100616626 100616626 C T FOXE1 Missense_Mutation p.R144C 0.25 deleterious(0) probably_damaging(0.997) TCGA-G4-6320-01 9 100862369 100862369 C T TRIM14 Silent p.A127A 0.06 TCGA-G4-6320-01 9 103062934 103062935 - A INVS Frame_Shift_Ins p.N1061Kfs*20 0.14 TCGA-G4-6320-01 9 104500839 104500839 T A GRIN3A 5'UTR 0.23 TCGA-G4-6320-01 9 106864779 106864779 C T SMC2 Silent p.S315S 0.28 TCGA-G4-6320-01 9 109691025 109691025 C T ZNF462 Missense_Mutation p.S1611L 0.23 possibly_damaging(0.793) TCGA-G4-6320-01 9 110248151 110248151 C T KLF4 Missense_Mutation p.D441N 0.18 deleterious(0) probably_damaging(0.981) TCGA-G4-6320-01 9 113245902 113245902 C A SVEP1 Missense_Mutation p.A668S 0.23 probably_damaging(0.931) TCGA-G4-6320-01 9 117121713 117121713 C T AKNA Intron 0.45 TCGA-G4-6320-01 9 117692698 117692698 A - TNFSF8 5'Flank 0.33 TCGA-G4-6320-01 9 117808755 117808755 C T TNC Missense_Mutation p.E1687K 0.23 tolerated(0.1) benign(0.013) TCGA-G4-6320-01 9 117848435 117848435 A C TNC Silent p.P525P 0.16 TCGA-G4-6320-01 9 123783803 123783803 G A C5 Missense_Mutation p.T429M 0.19 deleterious(0.02) benign(0.075) TCGA-G4-6320-01 9 123943720 123943720 C T RAB14 Missense_Mutation p.R201Q 0.22 tolerated(0.28) benign(0.002) TCGA-G4-6320-01 9 124535444 124535444 G A DAB2IP Silent p.A851A 0.33 TCGA-G4-6320-01 9 125154580 125154580 G A PTGS1 Silent p.E519E 0.17 TCGA-G4-6320-01 9 125273258 125273258 T C OR1J2 Missense_Mutation p.Y60H 0.60 deleterious_low_confidence(0) benign(0.417) TCGA-G4-6320-01 9 127572212 127572212 C T OLFML2A Missense_Mutation p.R494C 0.28 deleterious(0) possibly_damaging(0.898) TCGA-G4-6320-01 9 128692121 128692121 C T PBX3 Missense_Mutation p.A235V 0.15 deleterious(0.02) possibly_damaging(0.604) TCGA-G4-6320-01 9 129642725 129642725 C T ZBTB34 Silent p.A345A 0.19 TCGA-G4-6320-01 9 129979223 129979223 C T RALGPS1 Intron 0.16 TCGA-G4-6320-01 9 131022391 131022391 G A GOLGA2 Silent p.G585G 0.20 TCGA-G4-6320-01 9 131515838 131515838 G A ZER1 Silent p.S117S 0.17 TCGA-G4-6320-01 9 131831356 131831356 C T FAM73B Missense_Mutation p.A469V 0.12 deleterious(0.03) possibly_damaging(0.841) TCGA-G4-6320-01 9 132572661 132572661 C T TOR1B 3'UTR 0.23 TCGA-G4-6320-01 9 132591466 132591466 G T C9orf78 Intron 0.25 TCGA-G4-6320-01 9 134319670 134319670 G A PRRC2B Missense_Mutation p.V190I 0.18 tolerated(0.08) possibly_damaging(0.526) TCGA-G4-6320-01 9 135507469 135507469 C T DDX31 Missense_Mutation p.A589T 0.20 deleterious(0) probably_damaging(0.984) TCGA-G4-6320-01 9 135937420 135937420 C A CEL Missense_Mutation p.L14I 0.18 tolerated(0.05) possibly_damaging(0.852) TCGA-G4-6320-01 9 135962317 135962317 C T CELP RNA 0.14 TCGA-G4-6320-01 9 137622234 137622234 G - COL5A1 Frame_Shift_Del p.E361Rfs*197 0.17 TCGA-G4-6320-01 9 137712043 137712043 G A COL5A1 Missense_Mutation p.G1510S 0.37 unknown(0) TCGA-G4-6320-01 9 137968783 137968783 G T OLFM1 Intron 0.30 TCGA-G4-6320-01 9 138515981 138515981 G T GLT6D1 Missense_Mutation p.H265N 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6320-01 9 139282207 139282207 G - SNAPC4 Frame_Shift_Del p.P406Rfs*46 0.21 TCGA-G4-6320-01 9 139361517 139361517 C T SEC16A Missense_Mutation p.R1274H 0.25 deleterious(0.04) benign(0.399) TCGA-G4-6320-01 9 139910199 139910199 C T ABCA2 Missense_Mutation p.D1148N 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 9 139910594 139910594 G A ABCA2 Missense_Mutation p.S1046L 0.18 deleterious(0) probably_damaging(0.96) TCGA-G4-6320-01 9 139945517 139945517 C - ENTPD2 Frame_Shift_Del p.G204Vfs*171 0.21 TCGA-G4-6320-01 9 140250729 140250729 C T EXD3 Missense_Mutation p.V250I 0.15 tolerated(0.53) benign(0.007) TCGA-G4-6320-01 9 140330685 140330685 C T ENTPD8 Missense_Mutation p.G277D 0.20 tolerated(0.11) possibly_damaging(0.631) TCGA-G4-6320-01 9 140356756 140356756 G A PNPLA7 Missense_Mutation p.R1174C 0.25 deleterious(0.01) benign(0.329) TCGA-G4-6320-01 9 140459370 140459370 G A DPH7 Missense_Mutation p.R251W 0.35 tolerated(0.05) benign(0.018) TCGA-G4-6320-01 9 141000206 141000206 C T CACNA1B Missense_Mutation p.T1792M 0.13 deleterious(0) probably_damaging(0.978) TCGA-G4-6320-01 9 17135069 17135069 G A CNTLN Silent p.A2A 0.44 TCGA-G4-6320-01 9 17298455 17298455 T - CNTLN Intron 0.19 TCGA-G4-6320-01 9 27949274 27949274 C A LINGO2 Missense_Mutation p.G466C 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 9 32500896 32500896 G T DDX58 Missense_Mutation p.P50T 0.25 tolerated(0.36) benign(0.013) TCGA-G4-6320-01 9 32632961 32632961 G A TAF1L Missense_Mutation p.R873C 0.54 deleterious(0) probably_damaging(0.973) TCGA-G4-6320-01 9 34521574 34521574 G A ENHO Silent p.D40D 0.37 TCGA-G4-6320-01 9 34647958 34647958 G T GALT Missense_Mutation p.Q169H 0.23 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 9 35074206 35074206 G T FANCG Missense_Mutation p.P590T 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6320-01 9 37441779 37441779 G A ZBTB5 Missense_Mutation p.A257V 0.24 deleterious_low_confidence(0.04) benign(0.026) TCGA-G4-6320-01 9 37518375 37518375 G A FBXO10 Missense_Mutation p.A754V 0.15 deleterious(0.01) probably_damaging(0.955) TCGA-G4-6320-01 9 37541290 37541290 C T FBXO10 Missense_Mutation p.G159E 0.22 deleterious(0.01) possibly_damaging(0.903) TCGA-G4-6320-01 9 37746427 37746427 C A FRMPD1 Silent p.S1466S 0.22 TCGA-G4-6320-01 9 7169999 7169999 A - KDM4C Intron 0.19 TCGA-G4-6320-01 9 72047583 72047583 G T APBA1 Missense_Mutation p.L771I 0.19 deleterious(0.02) probably_damaging(0.926) TCGA-G4-6320-01 9 72965054 72965054 C T SMC5 Nonsense_Mutation p.R972* 0.25 TCGA-G4-6320-01 9 75777757 75777757 G A ANXA1 Missense_Mutation p.A179T 0.30 tolerated(0.17) benign(0.112) TCGA-G4-6320-01 9 77257523 77257523 C T RORB Silent p.N143N 0.06 TCGA-G4-6320-01 9 79119299 79119300 - A GCNT1 3'UTR 0.10 TCGA-G4-6320-01 9 79121989 79121989 C T GCNT1 3'UTR 0.14 TCGA-G4-6320-01 9 82333722 82333722 C T TLE4 Missense_Mutation p.R476W 0.26 deleterious(0) probably_damaging(0.983) TCGA-G4-6320-01 9 88903456 88903456 A - ZCCHC6 3'UTR 0.22 TCGA-G4-6320-01 9 90266444 90266444 C T DAPK1 Silent p.D543D 0.06 TCGA-G4-6320-01 9 90321404 90321404 T C DAPK1 Missense_Mutation p.F1140L 0.24 tolerated(1) benign(0) TCGA-G4-6320-01 9 90500591 90500591 G A SPATA31E1 Missense_Mutation p.E397K 0.21 tolerated(0.15) possibly_damaging(0.646) TCGA-G4-6320-01 9 91977244 91977244 G - SECISBP2 3'Flank 0.27 TCGA-G4-6320-01 9 94495526 94495526 C T ROR2 Missense_Mutation p.R272H 0.19 deleterious(0) probably_damaging(0.993) TCGA-G4-6320-01 9 95477576 95477576 G A BICD2 Missense_Mutation p.R810C 0.29 deleterious(0) probably_damaging(0.972) TCGA-G4-6320-01 9 96416778 96416778 C T PHF2 Silent p.S291S 0.16 TCGA-G4-6320-01 9 990184 990184 G A DMRT3 Missense_Mutation p.V200M 0.16 tolerated(0.05) benign(0.312) TCGA-G4-6320-01 9 990871 990871 G A DMRT3 Missense_Mutation p.A429T 0.06 tolerated_low_confidence(0.25) benign(0) TCGA-G4-6320-01 9 99160584 99160584 G A ZNF367 Missense_Mutation p.R145C 0.05 deleterious(0) probably_damaging(0.988) TCGA-G4-6320-01 X 100265555 100265555 C T TRMT2B 3'UTR 0.37 TCGA-G4-6320-01 X 106843701 106843701 G A FRMPD3 Missense_Mutation p.R844H 0.46 deleterious(0) probably_damaging(0.942) TCGA-G4-6320-01 X 107224700 107224700 C T TEX13B Silent p.E183E 0.31 TCGA-G4-6320-01 X 107430450 107430450 T - COL4A6 Frame_Shift_Del p.G611Afs*127 0.34 TCGA-G4-6320-01 X 108619355 108619355 T - GUCY2F Frame_Shift_Del p.G1065Afs*3 0.31 TCGA-G4-6320-01 X 111155993 111155993 G T TRPC5 Missense_Mutation p.D142E 0.38 tolerated(0.06) possibly_damaging(0.789) TCGA-G4-6320-01 X 118377270 118377270 A C PGRMC1 3'UTR 0.23 TCGA-G4-6320-01 X 125685543 125685543 C T DCAF12L1 Missense_Mutation p.G350D 0.09 deleterious(0.01) benign(0.167) TCGA-G4-6320-01 X 128638751 128638751 T - SMARCA1 Frame_Shift_Del p.N376Ifs*16 0.26 TCGA-G4-6320-01 X 135630825 135630825 C T VGLL1 Missense_Mutation p.R98C 0.12 tolerated(0.06) possibly_damaging(0.673) TCGA-G4-6320-01 X 139586846 139586846 G A SOX3 Missense_Mutation p.A127V 0.83 tolerated(0.36) benign(0.016) TCGA-G4-6320-01 X 140271116 140271116 G A LDOC1 Missense_Mutation p.R31W 0.38 deleterious(0) probably_damaging(0.953) TCGA-G4-6320-01 X 140995692 140995692 C A MAGEC1 Missense_Mutation p.F834L 0.36 tolerated_low_confidence(0.66) unknown(0) TCGA-G4-6320-01 X 142121871 142121871 G T SPANXN4 Missense_Mutation p.A47S 0.33 tolerated_low_confidence(1) possibly_damaging(0.694) TCGA-G4-6320-01 X 142717776 142717776 G A SLITRK4 Silent p.H383H 0.31 TCGA-G4-6320-01 X 144904117 144904118 - C SLITRK2 Frame_Shift_Ins p.Q61Pfs*35 0.35 TCGA-G4-6320-01 X 153691977 153691977 C T PLXNA3 Silent p.C497C 0.49 TCGA-G4-6320-01 X 155233462 155233462 C T IL9R Silent p.C125C 0.20 TCGA-G4-6320-01 X 23018404 23018404 C T DDX53 Missense_Mutation p.S77L 0.39 tolerated(0.24) benign(0.021) TCGA-G4-6320-01 X 2407691 2407691 G A ZBED1 Missense_Mutation p.T357M 0.23 deleterious(0.01) possibly_damaging(0.796) TCGA-G4-6320-01 X 3238904 3238904 C T MXRA5 Missense_Mutation p.V1608I 0.39 tolerated(0.14) benign(0.004) TCGA-G4-6320-01 X 3573435 3573435 G A PRKX Silent p.D118D 0.85 TCGA-G4-6320-01 X 47487022 47487022 C T CFP Missense_Mutation p.G141D 0.45 tolerated(0.69) benign(0.002) TCGA-G4-6320-01 X 51238874 51238874 C T NUDT11 Silent p.E141E 0.43 TCGA-G4-6320-01 X 53439067 53439067 C A SMC1A Missense_Mutation p.G331C 0.42 deleterious(0.02) possibly_damaging(0.563) TCGA-G4-6320-01 X 56259719 56259719 C T KLF8 5'UTR 0.34 TCGA-G4-6320-01 X 66788809 66788809 G A AR Intron 0.40 TCGA-G4-6320-01 X 70832365 70832365 G T ACRC Missense_Mutation p.K637N 0.06 unknown(0) TCGA-G4-6320-01 X 71838645 71838645 C T PHKA1 Missense_Mutation p.D762N 0.32 tolerated(0.12) benign(0.151) TCGA-G4-6320-01 X 8434407 8434407 G A VCX3B Missense_Mutation p.E242K 0.38 tolerated_low_confidence(0.36) unknown(0) TCGA-G4-6320-01 X 90691260 90691260 T C PABPC5 Silent p.V228V 0.10 TCGA-G4-6320-01 X 90692425 90692425 G T PABPC5 3'UTR 0.49 TCGA-G4-6320-01 X 91133626 91133626 C A PCDH11X Missense_Mutation p.P796Q 0.44 tolerated(1) benign(0.004) TCGA-G4-6320-01 X 91134308 91134309 - T PCDH11X Intron 0.31 TCGA-G4-6320-01 X 96200573 96200573 G A DIAPH2 Missense_Mutation p.A498T 0.30 tolerated(0.32) unknown(0) TCGA-G4-6320-01 X 96330187 96330187 G A DIAPH2 Missense_Mutation p.R725H 0.04 tolerated(0.2) probably_damaging(0.995) TCGA-G4-6320-01 X 9900853 9900853 C - SHROOM2 Frame_Shift_Del p.Q1179Rfs*3 0.35 TCGA-G4-6320-01 X 99663553 99663553 G T PCDH19 Missense_Mutation p.L15M 0.50 deleterious(0.01) probably_damaging(0.986) TCGA-G4-6320-01 Y 2829424 2829424 T C ZFY Missense_Mutation p.I124T 0.64 deleterious(0.02) possibly_damaging(0.809) TCGA-G4-6321-01 10 125557576 125557576 G A CPXM2 Missense_Mutation p.R269C 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6321-01 10 24883941 24883941 C A ARHGAP21 Nonsense_Mutation p.E1272* 0.18 TCGA-G4-6321-01 10 69366681 69366681 T C CTNNA3 Missense_Mutation p.I76V 0.05 tolerated(0.16) benign(0.112) TCGA-G4-6321-01 11 119212198 119212198 G A MFRP 3'UTR 0.10 TCGA-G4-6321-01 11 6191244 6191244 A G OR52B2 Missense_Mutation p.F105L 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-G4-6321-01 12 103352558 103352558 C T ASCL1 Missense_Mutation p.A179V 0.23 deleterious(0) possibly_damaging(0.67) TCGA-G4-6321-01 12 106460547 106460547 G A NUAK1 3'UTR 0.12 TCGA-G4-6321-01 12 129558466 129558466 C A TMEM132D Missense_Mutation p.C1085F 0.11 tolerated(0.1) benign(0.015) TCGA-G4-6321-01 12 130935763 130935763 C T RIMBP2 Missense_Mutation p.A144T 0.09 tolerated(0.22) benign(0.004) TCGA-G4-6321-01 12 51584249 51584249 G A POU6F1 Silent p.G229G 0.11 TCGA-G4-6321-01 13 114530025 114530025 G A GAS6 Missense_Mutation p.T474M 0.26 deleterious(0.04) possibly_damaging(0.776) TCGA-G4-6321-01 14 105419698 105419698 G A AHNAK2 Missense_Mutation p.S697L 0.06 probably_damaging(0.96) TCGA-G4-6321-01 14 29261190 29261190 A T C14orf23 Missense_Mutation p.Y76F 0.06 tolerated_low_confidence(0.66) benign(0.001) TCGA-G4-6321-01 14 37739649 37739649 G T MIPOL1 Missense_Mutation p.D138Y 0.03 deleterious(0) probably_damaging(0.952) TCGA-G4-6321-01 14 62541877 62541877 G A SYT16 Missense_Mutation p.R254H 0.08 deleterious(0.04) benign(0.001) TCGA-G4-6321-01 16 10273974 10273974 C T GRIN2A Missense_Mutation p.V99M 0.07 deleterious(0) probably_damaging(0.938) TCGA-G4-6321-01 16 51175128 51175128 G A SALL1 Silent p.S335S 0.13 TCGA-G4-6321-01 16 55806296 55806296 C A CES1P1 RNA 0.32 TCGA-G4-6321-01 17 12916588 12916588 C T ELAC2 Silent p.V165V 0.06 TCGA-G4-6321-01 17 37900874 37900874 C T GRB7 Silent p.R313R 0.11 TCGA-G4-6321-01 17 43580889 43580889 T C LRRC37A4P 3'Flank 0.10 TCGA-G4-6321-01 18 29046660 29046660 G A DSG3 Missense_Mutation p.A527T 0.07 tolerated(0.49) benign(0) TCGA-G4-6321-01 18 43422231 43422231 T C SIGLEC15 3'UTR 0.20 TCGA-G4-6321-01 18 64239420 64239420 G A CDH19 Missense_Mutation p.R8C 0.06 tolerated(0.18) benign(0.121) TCGA-G4-6321-01 19 38376538 38376538 C A WDR87 Silent p.L2552L 0.26 TCGA-G4-6321-01 19 39336347 39336347 C T HNRNPL Missense_Mutation p.C218Y 0.08 tolerated(1) probably_damaging(0.998) TCGA-G4-6321-01 19 49548413 49548413 C T CGB5 Silent p.C120C 0.17 TCGA-G4-6321-01 19 51227249 51227249 G A CLEC11A Missense_Mutation p.E79K 0.07 tolerated_low_confidence(0.12) benign(0.001) TCGA-G4-6321-01 19 52272592 52272592 G A FPR2 Silent p.K227K 0.03 TCGA-G4-6321-01 19 54135343 54135343 G A DPRX 5'UTR 0.08 TCGA-G4-6321-01 19 57335794 57335794 G A PEG3 Missense_Mutation p.P77L 0.06 deleterious(0) benign(0.409) TCGA-G4-6321-01 19 9007838 9007838 G A MUC16 Missense_Mutation p.T13129I 0.12 probably_damaging(0.962) TCGA-G4-6321-01 1 108160195 108160195 G T VAV3 Nonsense_Mutation p.C658* 0.21 TCGA-G4-6321-01 1 1404049 1404049 G A ATAD3C 3'UTR 0.05 TCGA-G4-6321-01 1 157567750 157567750 G T FCRL4 5'UTR 0.11 TCGA-G4-6321-01 1 181754870 181754870 C T CACNA1E Missense_Mutation p.R1901C 0.10 deleterious(0) possibly_damaging(0.689) TCGA-G4-6321-01 1 201777943 201777943 G A NAV1 Missense_Mutation p.R1384H 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-G4-6321-01 1 206225030 206225030 G A AVPR1B Missense_Mutation p.R197Q 0.26 tolerated(0.09) benign(0.057) TCGA-G4-6321-01 1 22974057 22974057 G A C1QC Silent p.S173S 0.06 TCGA-G4-6321-01 1 245849195 245849195 G A KIF26B Silent p.G970G 0.08 TCGA-G4-6321-01 1 32158701 32158701 C T COL16A1 Missense_Mutation p.G355R 0.18 unknown(0) TCGA-G4-6321-01 1 43787312 43787312 C T TIE1 Missense_Mutation p.R1091W 0.04 deleterious(0) probably_damaging(0.999) TCGA-G4-6321-01 20 20269392 20269392 C T C20orf26 Missense_Mutation p.S979F 0.29 deleterious(0) possibly_damaging(0.652) TCGA-G4-6321-01 20 31878782 31878782 G A BPIFB1 Missense_Mutation p.V129M 0.26 deleterious(0.04) probably_damaging(0.945) TCGA-G4-6321-01 20 36841701 36841701 C A KIAA1755 Nonsense_Mutation p.E1116* 0.10 TCGA-G4-6321-01 20 60921630 60921630 C A LAMA5 Missense_Mutation p.C405F 0.04 probably_damaging(0.999) TCGA-G4-6321-01 22 19808805 19808805 G A GNB1L Missense_Mutation p.A25V 0.10 deleterious(0.05) benign(0.024) TCGA-G4-6321-01 2 140997030 140997030 G T LRP1B Missense_Mutation p.L4466I 0.08 benign(0.364) TCGA-G4-6321-01 2 154334954 154334954 C T RPRM Silent p.A42A 0.09 TCGA-G4-6321-01 2 170402733 170402733 C G FASTKD1 Missense_Mutation p.E566Q 0.24 deleterious(0.02) possibly_damaging(0.489) TCGA-G4-6321-01 2 198572685 198572685 A C MARS2 3'UTR 0.33 TCGA-G4-6321-01 2 38908437 38908437 C T GALM Missense_Mutation p.R121W 0.07 deleterious(0) possibly_damaging(0.567) TCGA-G4-6321-01 2 90044314 90044314 C T IGKV2D-24 Missense_Mutation p.R79W 0.17 deleterious(0.03) benign(0.065) TCGA-G4-6321-01 3 101232004 101232004 G A SENP7 5'UTR 0.12 TCGA-G4-6321-01 3 141535598 141535598 G A GRK7 Silent p.T456T 0.21 TCGA-G4-6321-01 3 195955791 195955791 C T SLC51A Silent p.D211D 0.12 TCGA-G4-6321-01 3 38891924 38891924 A C SCN11A Intron 0.07 TCGA-G4-6321-01 3 447213 447213 G A CHL1 Missense_Mutation p.R1165Q 0.16 tolerated(0.33) benign(0.126) TCGA-G4-6321-01 3 51352488 51352488 C T DOCK3 Missense_Mutation p.R1111W 0.10 deleterious(0) probably_damaging(0.994) TCGA-G4-6321-01 3 53902793 53902793 G A ACTR8 Missense_Mutation p.R610C 0.12 deleterious(0) probably_damaging(0.98) TCGA-G4-6321-01 3 57109457 57109457 G A SPATA12 3'UTR 0.16 TCGA-G4-6321-01 4 100341731 100341731 C T ADH7 Missense_Mutation p.V282M 0.15 deleterious(0.03) benign(0.303) TCGA-G4-6321-01 4 113825655 113825655 C A ANK2 Silent p.T2T 0.07 TCGA-G4-6321-01 4 126329641 126329641 G C FAT4 Missense_Mutation p.G1871A 0.17 probably_damaging(0.956) TCGA-G4-6321-01 4 147561803 147561803 G A POU4F2 Missense_Mutation p.R358H 0.09 deleterious(0.03) possibly_damaging(0.646) TCGA-G4-6321-01 4 177113837 177113837 G A SPATA4 Missense_Mutation p.A210V 0.07 tolerated(1) benign(0.005) TCGA-G4-6321-01 4 48486152 48486152 G A SLC10A4 Missense_Mutation p.G192S 0.09 deleterious(0) probably_damaging(0.998) TCGA-G4-6321-01 4 68784789 68784789 G A TMPRSS11A Missense_Mutation p.S288L 0.08 deleterious(0) benign(0.407) TCGA-G4-6321-01 4 77288529 77288529 C T CCDC158 Missense_Mutation p.R583Q 0.04 tolerated(0.16) probably_damaging(0.975) TCGA-G4-6321-01 4 9982359 9982359 C T SLC2A9 Missense_Mutation p.V180I 0.10 tolerated(1) benign(0.005) TCGA-G4-6321-01 5 127638736 127638736 T C FBN2 Missense_Mutation p.K1949R 0.06 tolerated(0.21) possibly_damaging(0.734) TCGA-G4-6321-01 5 127653909 127653909 G A FBN2 Missense_Mutation p.T1550M 0.11 deleterious(0.02) probably_damaging(0.982) TCGA-G4-6321-01 5 139494646 139494646 C T PURA Nonsense_Mutation p.Q294* 0.08 TCGA-G4-6321-01 5 140755849 140755849 G A PCDHGA6 Silent p.A733A 0.19 TCGA-G4-6321-01 5 3601149 3601149 G A IRX1 Missense_Mutation p.A480T 0.09 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-G4-6321-01 5 63665613 63665613 T A RNF180 Missense_Mutation p.F584Y 0.08 deleterious(0.01) benign(0.035) TCGA-G4-6321-01 6 112493824 112493824 G A LAMA4 Missense_Mutation p.R514W 0.16 deleterious(0) possibly_damaging(0.846) TCGA-G4-6321-01 6 132029990 132029990 G T CTAGE9 Missense_Mutation p.P723Q 0.25 deleterious(0) benign(0.169) TCGA-G4-6321-01 6 133783898 133783898 G T EYA4 Missense_Mutation p.M240I 0.23 tolerated(0.23) possibly_damaging(0.835) TCGA-G4-6321-01 6 139583814 139583814 C T TXLNB Missense_Mutation p.E262K 0.07 deleterious(0.03) probably_damaging(1) TCGA-G4-6321-01 6 145172263 145172263 G A UTRN 3'UTR 0.11 TCGA-G4-6321-01 6 75861641 75861641 G A COL12A1 Silent p.D1314D 0.16 TCGA-G4-6321-01 6 93979204 93979204 T A EPHA7 Missense_Mutation p.M542L 0.08 tolerated(0.7) benign(0) TCGA-G4-6321-01 7 117431368 117431368 C T CTTNBP2 Missense_Mutation p.V628I 0.07 tolerated(0.31) benign(0.012) TCGA-G4-6321-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-G4-6321-01 7 144075874 144075874 C T ARHGEF5 Silent p.C1517C 0.16 TCGA-G4-6321-01 7 6623048 6623048 G A ZDHHC4 Missense_Mutation p.R161Q 0.11 deleterious(0.04) possibly_damaging(0.902) TCGA-G4-6321-01 8 116632173 116632173 G A TRPS1 Missense_Mutation p.S51F 0.23 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-G4-6321-01 8 3165968 3165968 C T CSMD1 Missense_Mutation p.R1230H 0.12 possibly_damaging(0.636) TCGA-G4-6321-01 8 77765435 77765435 C A ZFHX4 Missense_Mutation p.P2093H 0.08 possibly_damaging(0.619) TCGA-G4-6321-01 9 23692724 23692724 T C ELAVL2 Missense_Mutation p.N304S 0.06 tolerated(0.53) benign(0.38) TCGA-G4-6321-01 9 78804134 78804135 - A PCSK5 Frame_Shift_Ins p.C838Mfs*2 0.10 TCGA-G4-6321-01 X 100532669 100532669 C A TAF7L Nonsense_Mutation p.E292* 0.29 TCGA-G4-6321-01 X 105451892 105451892 C T MUM1L1 3'UTR 0.14 TCGA-G4-6321-01 X 105855399 105855399 C T CXorf57 Missense_Mutation p.P30L 0.14 deleterious_low_confidence(0.02) benign(0.016) TCGA-G4-6321-01 X 119573101 119573101 C A LAMP2 Intron 0.06 TCGA-G4-6321-01 X 134989536 134989536 C T SAGE1 Silent p.N314N 0.09 TCGA-G4-6321-01 X 151514086 151514086 C T GABRA3 Missense_Mutation p.G77S 0.04 deleterious(0) probably_damaging(1) TCGA-G4-6321-01 X 21896634 21896634 G A MBTPS2 Missense_Mutation p.R362Q 0.28 deleterious(0) probably_damaging(0.971) TCGA-G4-6321-01 X 30261069 30261069 G A MAGEB4 Missense_Mutation p.G273S 0.07 deleterious(0) probably_damaging(1) TCGA-G4-6321-01 X 30742243 30742243 G T GK Missense_Mutation p.W503C 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6321-01 X 64749522 64749522 C T LAS1L Missense_Mutation p.E251K 0.09 tolerated(0.05) probably_damaging(0.99) TCGA-G4-6321-01 X 70387496 70387496 G T NLGN3 Missense_Mutation p.A517S 0.10 tolerated(0.69) possibly_damaging(0.808) TCGA-G4-6322-01 10 24874804 24874804 T C ARHGAP21 Missense_Mutation p.I1472V 0.11 tolerated(0.41) benign(0.001) TCGA-G4-6322-01 11 131781366 131781366 G A NTM 5'UTR 0.04 TCGA-G4-6322-01 11 43413069 43413069 T A TTC17 Silent p.P158P 0.06 TCGA-G4-6322-01 11 61026257 61026257 C T VWCE Missense_Mutation p.V920M 0.06 tolerated_low_confidence(0.07) benign(0.005) TCGA-G4-6322-01 11 68773488 68773488 G A MRGPRF Missense_Mutation p.A97V 0.05 tolerated(0.1) possibly_damaging(0.718) TCGA-G4-6322-01 11 7111190 7111190 G A RBMXL2 Missense_Mutation p.R280Q 0.38 deleterious(0) benign(0.001) TCGA-G4-6322-01 12 104171773 104171773 G A NT5DC3 Missense_Mutation p.S494L 0.34 tolerated(0.68) benign(0.427) TCGA-G4-6322-01 12 45833458 45833458 T C ANO6 Missense_Mutation p.Y843H 0.43 tolerated(1) benign(0) TCGA-G4-6322-01 12 50294968 50294968 G T FAIM2 Missense_Mutation p.F52L 0.46 tolerated(0.36) benign(0.006) TCGA-G4-6322-01 12 51461734 51461734 C T CSRNP2 Missense_Mutation p.V144M 0.08 deleterious(0.02) probably_damaging(0.988) TCGA-G4-6322-01 13 101290256 101290257 - TTT TMTC4 In_Frame_Ins p.D254delinsEN 0.50 TCGA-G4-6322-01 13 23909132 23909132 C T SACS Silent p.S2961S 0.42 TCGA-G4-6322-01 13 32527372 32527372 C T EEF1DP3 RNA 0.26 TCGA-G4-6322-01 13 37011830 37011830 C A CCNA1 Missense_Mutation p.A121E 0.44 tolerated(1) benign(0.003) TCGA-G4-6322-01 13 39261402 39261402 G A FREM2 5'UTR 0.53 TCGA-G4-6322-01 13 39261820 39261820 C T FREM2 Silent p.D113D 0.29 TCGA-G4-6322-01 13 96638652 96638652 G A UGGT2 Silent p.S322S 0.30 TCGA-G4-6322-01 14 21269582 21269582 A G RNASE1 3'UTR 0.18 TCGA-G4-6322-01 14 23857014 23857014 G A MYH6 Missense_Mutation p.S1493F 0.38 deleterious(0.02) possibly_damaging(0.908) TCGA-G4-6322-01 14 24877294 24877294 C T NYNRIN Nonsense_Mutation p.R140* 0.37 TCGA-G4-6322-01 14 31376122 31376122 C - STRN3 Frame_Shift_Del p.E617Kfs*24 0.20 TCGA-G4-6322-01 14 64699782 64699782 C T ESR2 3'Flank 0.26 TCGA-G4-6322-01 14 86091939 86091939 T C FLRT2 3'UTR 0.39 TCGA-G4-6322-01 15 22473041 22473041 G A IGHV4OR15-8 Missense_Mutation p.P77L 0.25 deleterious(0.02) benign(0.01) TCGA-G4-6322-01 15 27182352 27182352 G T GABRA5 Missense_Mutation p.V201F 0.35 deleterious(0) possibly_damaging(0.829) TCGA-G4-6322-01 15 34064243 34064243 G A RYR3 Missense_Mutation p.R2980Q 0.38 benign(0.275) TCGA-G4-6322-01 15 55912376 55912376 C T PRTG Missense_Mutation p.G1096D 0.78 tolerated_low_confidence(0.64) benign(0.002) TCGA-G4-6322-01 15 89401605 89401605 G T ACAN Missense_Mutation p.S1930I 0.35 deleterious(0.01) possibly_damaging(0.776) TCGA-G4-6322-01 16 11000991 11000991 C T CIITA Missense_Mutation p.R548W 0.45 deleterious(0.04) benign(0.365) TCGA-G4-6322-01 16 16165517 16165518 - TGA ABCC1 In_Frame_Ins p.R615delinsLS 0.38 TCGA-G4-6322-01 16 708326 708326 G A WDR90 Silent p.S916S 0.42 TCGA-G4-6322-01 16 70908311 70908311 C A HYDIN Missense_Mutation p.L3615F 0.19 probably_damaging(0.934) TCGA-G4-6322-01 16 84212528 84212528 G A TAF1C 3'UTR 0.28 TCGA-G4-6322-01 17 16842877 16842877 C T TNFRSF13B Missense_Mutation p.G289E 0.11 tolerated(0.23) benign(0.284) TCGA-G4-6322-01 17 42979850 42979850 G T CCDC103 Missense_Mutation p.G132C 0.47 deleterious(0) probably_damaging(0.98) TCGA-G4-6322-01 17 48595059 48595059 G A MYCBPAP Silent p.Q199Q 0.36 TCGA-G4-6322-01 17 53111602 53111602 C T STXBP4 Silent p.S279S 0.10 TCGA-G4-6322-01 17 7751201 7751201 G A KDM6B Missense_Mutation p.R532H 0.44 unknown(0) TCGA-G4-6322-01 17 8064042 8064042 G A VAMP2 3'UTR 0.25 TCGA-G4-6322-01 17 8064043 8064043 G C VAMP2 3'UTR 0.25 TCGA-G4-6322-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.73 deleterious(0.03) probably_damaging(1) TCGA-G4-6322-01 18 6868198 6868198 C T ARHGAP28 Missense_Mutation p.P100L 0.52 tolerated(0.21) benign(0.001) TCGA-G4-6322-01 19 11132437 11132437 C T SMARCA4 Missense_Mutation p.R885C 0.35 probably_damaging(0.998) TCGA-G4-6322-01 19 12541185 12541185 G A ZNF443 Missense_Mutation p.R601C 0.43 deleterious(0.02) possibly_damaging(0.772) TCGA-G4-6322-01 19 17439081 17439081 T G ANO8 Missense_Mutation p.T706P 0.38 tolerated(0.2) unknown(0) TCGA-G4-6322-01 19 18981348 18981348 G A GDF1 5'UTR 0.46 TCGA-G4-6322-01 19 3029033 3029033 G A TLE2 5'UTR 0.17 TCGA-G4-6322-01 19 3834903 3834903 G A ZFR2 Silent p.A44A 0.58 TCGA-G4-6322-01 19 38976259 38976259 G A RYR1 Missense_Mutation p.R1655H 0.45 benign(0.019) TCGA-G4-6322-01 19 41928649 41928649 C T BCKDHA Silent p.P323P 0.45 TCGA-G4-6322-01 19 45909800 45909800 T A CD3EAP 5'UTR 0.26 TCGA-G4-6322-01 19 46997247 46997247 G A PNMAL2 Silent p.A492A 0.46 TCGA-G4-6322-01 19 55493963 55493963 G A NLRP2 Silent p.A299A 0.40 TCGA-G4-6322-01 1 107600073 107600073 G A PRMT6 Missense_Mutation p.V246M 0.49 deleterious(0) possibly_damaging(0.849) TCGA-G4-6322-01 1 11105504 11105504 C T MASP2 Missense_Mutation p.A169T 0.70 tolerated(0.23) benign(0.009) TCGA-G4-6322-01 1 11172953 11172953 C T MTOR Missense_Mutation p.R2441Q 0.71 tolerated(0.18) benign(0.138) TCGA-G4-6322-01 1 154544351 154544351 A G CHRNB2 Missense_Mutation p.Q351R 0.12 tolerated(1) benign(0.001) TCGA-G4-6322-01 1 154987959 154987959 G A ZBTB7B Missense_Mutation p.G309S 0.44 tolerated(0.13) benign(0.074) TCGA-G4-6322-01 1 225226395 225226395 G A DNAH14 Splice_Site p.X472_splice 0.05 TCGA-G4-6322-01 1 237617718 237617718 G A RYR2 Silent p.A440A 0.47 TCGA-G4-6322-01 1 240458125 240458125 T C FMN2 Missense_Mutation p.V1386A 0.11 possibly_damaging(0.655) TCGA-G4-6322-01 1 26349783 26349783 C T EXTL1 Missense_Mutation p.R216W 0.14 tolerated(0.16) benign(0.058) TCGA-G4-6322-01 1 36039198 36039198 C T TFAP2E Missense_Mutation p.S7F 0.12 deleterious(0) possibly_damaging(0.485) TCGA-G4-6322-01 1 47842642 47842642 C T CMPK1 3'UTR 0.17 TCGA-G4-6322-01 1 47882256 47882256 G A FOXE3 Missense_Mutation p.R90H 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-G4-6322-01 1 55518444 55518444 C T PCSK9 Missense_Mutation p.T260M 0.43 deleterious(0) probably_damaging(0.993) TCGA-G4-6322-01 20 20016845 20016846 - TCACTC CRNKL1 In_Frame_Ins p.S846_E847dup 0.10 TCGA-G4-6322-01 20 31757069 31757069 C A BPIFA2 Missense_Mutation p.L40I 0.21 tolerated(0.56) benign(0.056) TCGA-G4-6322-01 21 46197222 46197222 T C UBE2G2 Missense_Mutation p.H79R 0.39 deleterious(0) probably_damaging(1) TCGA-G4-6322-01 22 18846094 18846094 C T BCRP7 RNA 0.12 TCGA-G4-6322-01 22 24891342 24891342 C T UPB1 5'UTR 0.40 TCGA-G4-6322-01 22 29192120 29192120 G A XBP1 Missense_Mutation p.P172S 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-G4-6322-01 22 41527620 41527620 G T EP300 Missense_Mutation p.R504L 0.40 unknown(0) TCGA-G4-6322-01 22 44681372 44681372 C T KIAA1644 Missense_Mutation p.V179M 0.45 tolerated_low_confidence(0.16) benign(0.004) TCGA-G4-6322-01 2 153463899 153463899 G A FMNL2 Missense_Mutation p.R308K 0.39 benign(0.032) TCGA-G4-6322-01 2 166911170 166911170 C T SCN1A Missense_Mutation p.D194N 0.37 deleterious(0) probably_damaging(0.999) TCGA-G4-6322-01 2 179611704 179611704 G A TTN Intron 0.41 TCGA-G4-6322-01 2 203807538 203807538 C T CARF Missense_Mutation p.R52C 0.34 tolerated_low_confidence(0.19) benign(0.309) TCGA-G4-6322-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6322-01 2 209113202 209113202 A G IDH1 Missense_Mutation p.I102T 0.48 tolerated_low_confidence(0.05) benign(0.044) TCGA-G4-6322-01 2 228228393 228228393 C G TM4SF20 3'UTR 0.43 TCGA-G4-6322-01 2 239247081 239247081 C T TRAF3IP1 Missense_Mutation p.T381M 0.33 tolerated(0.05) probably_damaging(0.922) TCGA-G4-6322-01 2 241530261 241530261 C T CAPN10 Silent p.A101A 0.11 TCGA-G4-6322-01 2 74593137 74593137 C T DCTN1 Silent p.P923P 0.41 TCGA-G4-6322-01 3 52366216 52366216 C A DNAH1 Nonsense_Mutation p.C364* 0.23 TCGA-G4-6322-01 4 126411514 126411514 G A FAT4 Missense_Mutation p.A4513T 0.40 probably_damaging(0.993) TCGA-G4-6322-01 4 158281128 158281128 C T GRIA2 Silent p.A708A 0.44 TCGA-G4-6322-01 4 169060670 169060670 C T ANXA10 Missense_Mutation p.T45I 0.44 deleterious(0.02) probably_damaging(0.942) TCGA-G4-6322-01 4 25678243 25678243 G A SLC34A2 Missense_Mutation p.E649K 0.54 tolerated(0.1) benign(0.035) TCGA-G4-6322-01 4 266148 266148 C A ZNF732 Missense_Mutation p.E166D 0.42 tolerated(0.06) possibly_damaging(0.899) TCGA-G4-6322-01 4 79203978 79203978 G A FRAS1 Missense_Mutation p.G371E 0.42 benign(0.12) TCGA-G4-6322-01 4 88959524 88959524 G A PKD2 Missense_Mutation p.R322Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6322-01 5 112174094 112174095 - A APC Nonsense_Mutation p.Y935* 0.31 TCGA-G4-6322-01 5 112175358 112175358 C G APC Nonsense_Mutation p.S1356* 0.40 TCGA-G4-6322-01 5 137681218 137681218 C T FAM53C Missense_Mutation p.R281C 0.47 deleterious(0) probably_damaging(0.942) TCGA-G4-6322-01 5 140604671 140604671 G C PCDHB14 Missense_Mutation p.G532R 0.45 tolerated_low_confidence(0.29) benign(0.023) TCGA-G4-6322-01 5 140789690 140789690 C T PCDHGB6 Missense_Mutation p.R641C 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6322-01 5 150844097 150844097 T G SLC36A1 Missense_Mutation p.I86S 0.13 deleterious(0.03) benign(0.004) TCGA-G4-6322-01 5 15928298 15928298 C T FBXL7 Missense_Mutation p.R143C 0.09 deleterious(0) probably_damaging(0.996) TCGA-G4-6322-01 5 176079867 176079867 C T TSPAN17 Missense_Mutation p.R137W 0.06 deleterious(0) probably_damaging(0.988) TCGA-G4-6322-01 5 176709523 176709523 C T NSD1 Nonsense_Mutation p.R1984* 0.43 TCGA-G4-6322-01 5 38406274 38406274 C T EGFLAM Silent p.T253T 0.50 TCGA-G4-6322-01 5 93859687 93859687 G T KIAA0825 Missense_Mutation p.S83Y 0.38 tolerated(1) possibly_damaging(0.495) TCGA-G4-6322-01 6 130454763 130454763 C T L3MBTL3 Silent p.D711D 0.49 TCGA-G4-6322-01 6 17779908 17779908 G A KIF13A Missense_Mutation p.T1285M 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-G4-6322-01 6 26056420 26056420 A G HIST1H1C Silent p.R79R 0.27 TCGA-G4-6322-01 6 26157077 26157077 G A HIST1H1E Silent p.K153K 0.47 TCGA-G4-6322-01 6 33388022 33388022 G T SYNGAP1 5'UTR 0.37 TCGA-G4-6322-01 6 35265714 35265714 C G DEF6 Silent p.S27S 0.54 TCGA-G4-6322-01 7 114329921 114329921 T C FOXP2 Silent p.S721S 0.41 TCGA-G4-6322-01 7 137567160 137567160 G A CREB3L2 Silent p.H495H 0.27 TCGA-G4-6322-01 7 43447303 43447303 C A HECW1 Missense_Mutation p.N258K 0.41 deleterious(0) probably_damaging(1) TCGA-G4-6322-01 7 62752543 62752543 C T ZNF733P RNA 0.16 TCGA-G4-6322-01 7 79082705 79082705 G C MAGI2 5'UTR 0.43 TCGA-G4-6322-01 8 104414175 104414175 G A SLC25A32 Silent p.A220A 0.12 TCGA-G4-6322-01 8 117950581 117950581 G A AARD Silent p.A33A 0.31 TCGA-G4-6322-01 8 128428930 128428930 C A POU5F1B Silent p.V273V 0.43 TCGA-G4-6322-01 8 12958026 12958026 G A DLC1 Missense_Mutation p.A607V 0.24 tolerated(0.54) benign(0.002) TCGA-G4-6322-01 8 133623588 133623588 G A LRRC6 Silent p.I332I 0.37 TCGA-G4-6322-01 8 51569533 51569533 C A SNTG1 Missense_Mutation p.P305Q 0.45 deleterious(0.03) possibly_damaging(0.907) TCGA-G4-6322-01 9 100618865 100618865 C T FOXE1 3'UTR 0.44 TCGA-G4-6322-01 9 108151380 108151380 A G SLC44A1 3'UTR 0.31 TCGA-G4-6322-01 9 125746776 125746776 G A RABGAP1 Missense_Mutation p.G55R 0.16 deleterious(0) possibly_damaging(0.726) TCGA-G4-6322-01 9 131296046 131296046 G T GLE1 Missense_Mutation p.G488C 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6322-01 9 134098284 134098284 C T NUP214 Nonsense_Mutation p.Q1957* 0.31 TCGA-G4-6322-01 9 95766402 95766402 G A FGD3 Silent p.T221T 0.46 TCGA-G4-6322-01 X 135494431 135494431 C A GPR112 Missense_Mutation p.F2981L 0.82 tolerated(1) benign(0.001) TCGA-G4-6322-01 X 73524049 73524049 C T ZCCHC13 5'UTR 0.23 TCGA-G4-6322-01 X 83128152 83128152 C A CYLC1 Missense_Mutation p.Q146K 0.85 tolerated(1) benign(0.092) TCGA-G4-6323-01 10 12219831 12219831 G A NUDT5 Nonsense_Mutation p.R84* 0.24 TCGA-G4-6323-01 10 127782695 127782695 G C ADAM12 Nonsense_Mutation p.S338* 0.24 TCGA-G4-6323-01 10 89717609 89717609 G A PTEN Splice_Site p.X212_splice 0.08 TCGA-G4-6323-01 11 108384619 108384619 T C EXPH5 Missense_Mutation p.T539A 0.10 tolerated(0.15) benign(0.098) TCGA-G4-6323-01 11 125267928 125267928 C A PKNOX2 Silent p.P186P 0.30 TCGA-G4-6323-01 11 44941379 44941379 C T TSPAN18 Silent p.C148C 0.33 TCGA-G4-6323-01 11 5080375 5080375 A G OR52E2 Silent p.S161S 0.38 TCGA-G4-6323-01 11 5373212 5373212 G T OR51B6 Missense_Mutation p.V159F 0.21 tolerated(0.74) benign(0.014) TCGA-G4-6323-01 11 55761912 55761912 C T OR5F1 Missense_Mutation p.A64T 0.27 tolerated(0.09) benign(0.008) TCGA-G4-6323-01 11 61124255 61124255 G A CYB561A3 Intron 0.41 TCGA-G4-6323-01 11 86098705 86098705 T C CCDC81 Missense_Mutation p.Y97H 0.10 tolerated(0.98) benign(0.005) TCGA-G4-6323-01 12 111733165 111733165 G A CUX2 Missense_Mutation p.A197T 0.12 tolerated(0.2) possibly_damaging(0.788) TCGA-G4-6323-01 12 130919420 130919420 C G RIMBP2 Missense_Mutation p.E687D 0.41 tolerated(0.12) benign(0.03) TCGA-G4-6323-01 12 13208506 13208506 G A KIAA1467 Missense_Mutation p.G20E 0.58 deleterious(0) probably_damaging(0.986) TCGA-G4-6323-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.49 deleterious(0.04) possibly_damaging(0.506) TCGA-G4-6323-01 12 5022909 5022909 A G KCNA1 3'UTR 0.09 TCGA-G4-6323-01 12 53447777 53447777 A G TENC1 Missense_Mutation p.K120R 0.10 deleterious(0.03) benign(0.013) TCGA-G4-6323-01 12 53693630 53693630 T C C12orf10 Missense_Mutation p.S37P 0.16 tolerated(0.56) benign(0) TCGA-G4-6323-01 12 54379113 54379113 C T HOXC10 Missense_Mutation p.R24C 0.42 deleterious(0.04) benign(0.445) TCGA-G4-6323-01 12 56397823 56397823 G A SUOX Missense_Mutation p.R217Q 0.24 deleterious(0) probably_damaging(1) TCGA-G4-6323-01 12 56997165 56997165 C T BAZ2A Missense_Mutation p.R1088H 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6323-01 12 64823890 64823890 G A XPOT Missense_Mutation p.G600E 0.31 deleterious(0) probably_damaging(0.965) TCGA-G4-6323-01 13 78470582 78470582 T C EDNRB 3'UTR 0.38 TCGA-G4-6323-01 14 24838986 24838986 C T NFATC4 Missense_Mutation p.P191S 0.18 tolerated(0.26) benign(0.099) TCGA-G4-6323-01 14 58471426 58471426 G T C14orf37 3'UTR 0.24 TCGA-G4-6323-01 14 65261195 65261195 G A SPTB Silent p.T595T 0.37 TCGA-G4-6323-01 14 94912743 94912743 G A SERPINA11 Missense_Mutation p.P281L 0.32 deleterious(0.02) probably_damaging(0.976) TCGA-G4-6323-01 15 45464199 45464199 A G SHF Missense_Mutation p.W323R 0.27 deleterious(0) probably_damaging(0.996) TCGA-G4-6323-01 15 77092697 77092697 G A SCAPER Missense_Mutation p.S168L 0.31 deleterious(0) possibly_damaging(0.839) TCGA-G4-6323-01 16 21278991 21278991 C T CRYM Missense_Mutation p.R186Q 0.32 tolerated(0.59) benign(0.002) TCGA-G4-6323-01 16 22262557 22262557 C T EEF2K Missense_Mutation p.R178W 0.18 deleterious(0) probably_damaging(0.997) TCGA-G4-6323-01 16 26147294 26147294 G A HS3ST4 Missense_Mutation p.G366R 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6323-01 16 28970042 28970042 A G NFATC2IP Missense_Mutation p.E284G 0.09 deleterious(0.02) possibly_damaging(0.802) TCGA-G4-6323-01 16 78064571 78064571 G A CLEC3A Missense_Mutation p.D152N 0.16 deleterious(0) probably_damaging(0.999) TCGA-G4-6323-01 16 87368970 87368970 G A FBXO31 Silent p.H312H 0.19 TCGA-G4-6323-01 17 10222452 10222452 C T MYH13 Silent p.T1131T 0.25 TCGA-G4-6323-01 17 46023300 46023300 G T PNPO Missense_Mutation p.S164I 0.22 deleterious(0.01) possibly_damaging(0.537) TCGA-G4-6323-01 17 48539847 48539847 A G ACSF2 Silent p.E231E 0.09 TCGA-G4-6323-01 17 55123341 55123341 C T RNF126P1 RNA 0.30 TCGA-G4-6323-01 17 56389985 56389985 C A BZRAP1 Missense_Mutation p.D733Y 0.17 deleterious(0) probably_damaging(0.991) TCGA-G4-6323-01 17 61972823 61972823 C G CSH1 Intron 0.20 TCGA-G4-6323-01 17 78261955 78261955 A G RNF213 Silent p.E201E 0.12 TCGA-G4-6323-01 19 11527655 11527655 G A RGL3 Missense_Mutation p.R76W 0.25 deleterious(0.03) benign(0.411) TCGA-G4-6323-01 19 15164620 15164620 T C CASP14 Missense_Mutation p.V85A 0.09 tolerated(1) benign(0.198) TCGA-G4-6323-01 19 2114772 2114772 T G AP3D1 Silent p.R800R 0.24 TCGA-G4-6323-01 19 32845180 32845180 C T ZNF507 Missense_Mutation p.R482W 0.32 deleterious(0) probably_damaging(0.973) TCGA-G4-6323-01 19 34706500 34706500 G C LSM14A Splice_Site p.X239_splice 0.24 TCGA-G4-6323-01 19 38161186 38161186 C A ZNF781 5'UTR 0.29 TCGA-G4-6323-01 19 41008073 41008073 A G SPTBN4 Silent p.E312E 0.08 TCGA-G4-6323-01 19 43430712 43430712 C T PSG7 Missense_Mutation p.R289H 0.37 tolerated(0.18) benign(0.003) TCGA-G4-6323-01 19 44681031 44681031 G A ZNF226 Missense_Mutation p.G539D 0.23 deleterious(0.03) benign(0.163) TCGA-G4-6323-01 19 51960744 51960744 G A SIGLEC8 Missense_Mutation p.T235M 0.40 tolerated(0.09) possibly_damaging(0.661) TCGA-G4-6323-01 1 151509739 151509739 G A CGN Missense_Mutation p.D1177N 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6323-01 1 155733136 155733136 C A GON4L Missense_Mutation p.A1565S 0.31 tolerated(0.06) benign(0.014) TCGA-G4-6323-01 1 176104184 176104184 G A RFWD2 Silent p.S310S 0.28 TCGA-G4-6323-01 1 18810828 18810828 C T KLHDC7A 3'UTR 0.31 TCGA-G4-6323-01 1 201172921 201172921 G A IGFN1 Missense_Mutation p.R268Q 0.27 benign(0.412) TCGA-G4-6323-01 1 202934523 202934523 C T CYB5R1 Missense_Mutation p.G151R 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6323-01 1 202936336 202936336 C T CYB5R1 5'UTR 0.29 TCGA-G4-6323-01 1 208266153 208266153 T C PLXNA2 Missense_Mutation p.E692G 0.11 tolerated(0.08) benign(0.279) TCGA-G4-6323-01 1 210857360 210857360 G A KCNH1 Nonsense_Mutation p.R745* 0.38 TCGA-G4-6323-01 1 212800051 212800051 A G FAM71A 3'UTR 0.12 TCGA-G4-6323-01 1 230372105 230372105 T C GALNT2 Silent p.L160L 0.28 TCGA-G4-6323-01 1 230839054 230839054 C A AGT Nonsense_Mutation p.E431* 0.24 TCGA-G4-6323-01 1 236645871 236645871 C T EDARADD Silent p.D190D 0.30 TCGA-G4-6323-01 1 24172339 24172339 T A FUCA1 Missense_Mutation p.M423L 0.26 tolerated(1) benign(0.007) TCGA-G4-6323-01 1 247463958 247463958 G A ZNF496 Missense_Mutation p.H543Y 0.10 deleterious(0.02) possibly_damaging(0.461) TCGA-G4-6323-01 1 247921566 247921566 G A OR1C1 Missense_Mutation p.T48M 0.31 deleterious(0) benign(0.227) TCGA-G4-6323-01 1 27721200 27721200 C T GPR3 Missense_Mutation p.R300C 0.31 deleterious(0) probably_damaging(0.999) TCGA-G4-6323-01 1 34011755 34011755 G A CSMD2 Silent p.S2850S 0.56 TCGA-G4-6323-01 1 36823912 36823912 C A STK40 Silent p.L90L 0.25 TCGA-G4-6323-01 1 39800773 39800773 A G MACF1 Intron 0.13 TCGA-G4-6323-01 1 48705040 48705040 G A SLC5A9 Missense_Mutation p.R528H 0.05 deleterious(0.01) benign(0.082) TCGA-G4-6323-01 20 2597798 2597798 C T TMC2 Missense_Mutation p.A674V 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6323-01 20 47991219 47991219 C T KCNB1 Missense_Mutation p.R293H 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6323-01 20 49224981 49224981 C T FAM65C Missense_Mutation p.V297M 0.42 tolerated(0.1) benign(0.397) TCGA-G4-6323-01 20 62221522 62221522 C T GMEB2 Missense_Mutation p.A505T 0.47 tolerated(0.78) benign(0.001) TCGA-G4-6323-01 21 42779931 42779931 G A MX2 Missense_Mutation p.R640H 0.21 deleterious(0.01) probably_damaging(1) TCGA-G4-6323-01 21 45856983 45856983 G T TRPM2 Missense_Mutation p.S1367I 0.42 deleterious(0) possibly_damaging(0.713) TCGA-G4-6323-01 21 46888394 46888394 G A COL18A1 Silent p.A295A 0.33 TCGA-G4-6323-01 22 23503156 23503156 G A RAB36 Missense_Mutation p.R303Q 0.43 tolerated(0.29) benign(0.006) TCGA-G4-6323-01 22 40139830 40139830 C T ENTHD1 Missense_Mutation p.A560T 0.39 deleterious(0.02) benign(0.074) TCGA-G4-6323-01 22 42540526 42540526 A G RP4-669P10.16 5'Flank 0.16 TCGA-G4-6323-01 22 46704513 46704514 - AACC GTSE1 Frame_Shift_Ins p.L147Qfs*4 0.50 TCGA-G4-6323-01 2 131673575 131673575 G A ARHGEF4 5'Flank 0.20 TCGA-G4-6323-01 2 179599092 179599092 G A TTN Silent p.V5153V 0.20 TCGA-G4-6323-01 2 198593258 198593258 G C BOLL 3'UTR 0.14 TCGA-G4-6323-01 2 199011537 199011537 G T PLCL1 Nonsense_Mutation p.E1047* 0.27 TCGA-G4-6323-01 2 201725806 201725806 T C CLK1 Intron 0.14 TCGA-G4-6323-01 2 224842275 224842275 C T SERPINE2 Missense_Mutation p.R393Q 0.16 deleterious(0.05) probably_damaging(1) TCGA-G4-6323-01 2 228736372 228736372 G A DAW1 5'UTR 0.46 TCGA-G4-6323-01 2 238725781 238725781 A G RBM44 Silent p.K74K 0.33 TCGA-G4-6323-01 2 71797768 71797768 C T DYSF Missense_Mutation p.P1042L 0.29 deleterious(0.01) benign(0.223) TCGA-G4-6323-01 3 128181704 128181704 C T DNAJB8 Missense_Mutation p.G129S 0.12 tolerated(0.77) possibly_damaging(0.814) TCGA-G4-6323-01 3 14724567 14724567 G A C3orf20 Missense_Mutation p.R116H 0.36 tolerated(0.56) benign(0.001) TCGA-G4-6323-01 3 154832898 154832898 C T MME Silent p.Y104Y 0.32 TCGA-G4-6323-01 3 28520395 28520395 G T ZCWPW2 Nonsense_Mutation p.E195* 0.15 TCGA-G4-6323-01 4 103853427 103853427 A G SLC9B1 Missense_Mutation p.V228A 0.26 deleterious(0) probably_damaging(0.929) TCGA-G4-6323-01 4 106890236 106890236 C T NPNT 3'UTR 0.23 TCGA-G4-6323-01 4 118006200 118006200 T - TRAM1L1 Frame_Shift_Del p.N117Tfs*24 0.12 TCGA-G4-6323-01 4 13543667 13543667 G A NKX3-2 Missense_Mutation p.L318F 0.12 tolerated(0.06) benign(0.059) TCGA-G4-6323-01 4 152203551 152203551 T A PRSS48 Missense_Mutation p.V156D 0.37 deleterious(0) possibly_damaging(0.759) TCGA-G4-6323-01 4 155530930 155530930 T C FGG Intron 0.29 TCGA-G4-6323-01 4 17711117 17711117 G T FAM184B Missense_Mutation p.L98I 0.29 tolerated(0.08) benign(0.287) TCGA-G4-6323-01 4 178881994 178881994 C G LINC01098 5'UTR 0.25 TCGA-G4-6323-01 4 3156068 3156068 C T HTT Nonsense_Mutation p.R1183* 0.31 TCGA-G4-6323-01 4 44626702 44626702 G A YIPF7 Missense_Mutation p.S199L 0.26 deleterious(0.04) probably_damaging(0.962) TCGA-G4-6323-01 4 53740161 53740161 C G SCFD2 Missense_Mutation p.R677P 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-G4-6323-01 4 5586392 5586392 C A EVC2 Silent p.L1005L 0.31 TCGA-G4-6323-01 4 76489369 76489369 C T C4orf26 Missense_Mutation p.R53W 0.31 deleterious_low_confidence(0.01) benign(0.029) TCGA-G4-6323-01 4 79461682 79461682 C A FRAS1 Intron 0.33 TCGA-G4-6323-01 4 88732594 88732594 C T IBSP Silent p.N162N 0.21 TCGA-G4-6323-01 5 112170863 112170863 G A APC Splice_Site p.X653_splice 0.19 TCGA-G4-6323-01 5 112175675 112175676 - AG APC Frame_Shift_Ins p.S1465Rfs*9 0.29 TCGA-G4-6323-01 5 137781060 137781060 C T REEP2 Silent p.D185D 0.26 TCGA-G4-6323-01 5 140347642 140347642 C T PCDHAC2 Missense_Mutation p.R431W 0.32 deleterious(0.01) possibly_damaging(0.846) TCGA-G4-6323-01 5 140869025 140869025 G A PCDHGC5 Missense_Mutation p.R73H 0.38 tolerated(0.08) benign(0.011) TCGA-G4-6323-01 5 141694030 141694030 T C SPRY4 Missense_Mutation p.D238G 0.10 deleterious(0) possibly_damaging(0.801) TCGA-G4-6323-01 5 158747501 158747501 G A IL12B Silent p.C170C 0.30 TCGA-G4-6323-01 6 10984133 10984133 G A ELOVL2 Nonsense_Mutation p.R258* 0.28 TCGA-G4-6323-01 6 49518410 49518410 G A C6orf141 5'UTR 0.43 TCGA-G4-6323-01 6 56391232 56391232 C T DST Missense_Mutation p.R3396H 0.06 probably_damaging(0.979) TCGA-G4-6323-01 7 102988086 102988086 A G PSMC2 5'UTR 0.11 TCGA-G4-6323-01 7 119915722 119915722 G T KCND2 Nonsense_Mutation p.E346* 0.35 TCGA-G4-6323-01 7 12729368 12729368 G T ARL4A 3'UTR 0.20 TCGA-G4-6323-01 7 149576547 149576547 G A ATP6V0E2 Silent p.P141P 0.21 TCGA-G4-6323-01 7 40133785 40133785 C G CDK13 Missense_Mutation p.P1249A 0.23 tolerated_low_confidence(0.11) benign(0.019) TCGA-G4-6323-01 7 44802860 44802860 C T ZMIZ2 Missense_Mutation p.R570W 0.47 deleterious(0) probably_damaging(0.927) TCGA-G4-6323-01 7 54610430 54610430 G T VSTM2A Missense_Mutation p.G3W 0.31 tolerated(0.07) probably_damaging(0.99) TCGA-G4-6323-01 7 76610443 76610443 G A UPK3B Intron 0.17 TCGA-G4-6323-01 8 11174256 11174256 A G MTMR9 Silent p.V396V 0.36 TCGA-G4-6323-01 9 125616058 125616058 G T RC3H2 Intron 0.31 TCGA-G4-6323-01 9 135944183 135944183 C T CEL Silent p.D343D 0.15 TCGA-G4-6323-01 9 14851418 14851418 G A FREM1 Missense_Mutation p.A339V 0.21 deleterious(0.01) benign(0.045) TCGA-G4-6323-01 9 27950456 27950456 C T LINGO2 Missense_Mutation p.V72I 0.30 tolerated(0.51) benign(0.003) TCGA-G4-6323-01 9 6013909 6013909 C T RANBP6 Missense_Mutation p.E567K 0.08 deleterious(0) benign(0.334) TCGA-G4-6323-01 X 105167186 105167186 T C NRK Missense_Mutation p.L897P 0.09 tolerated(0.17) probably_damaging(0.999) TCGA-G4-6323-01 X 111697929 111697929 T A ZCCHC16 5'UTR 0.22 TCGA-G4-6323-01 X 124030028 124030028 C T TENM1 Missense_Mutation p.V94I 0.69 tolerated_low_confidence(0.28) benign(0.01) TCGA-G4-6586-01 10 100008701 100008701 G A LOXL4 Missense_Mutation p.R750C 0.34 deleterious(0.01) probably_damaging(0.917) TCGA-G4-6586-01 10 100185347 100185347 C T HPS1 Missense_Mutation p.R429H 0.45 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 10 101835725 101835725 C A CPN1 Silent p.T121T 0.36 TCGA-G4-6586-01 10 104181620 104181620 C T FBXL15 Missense_Mutation p.A95V 0.40 tolerated(0.22) benign(0.025) TCGA-G4-6586-01 10 104634408 104634408 G A AS3MT Missense_Mutation p.R173Q 0.34 tolerated(0.07) benign(0.26) TCGA-G4-6586-01 10 105205158 105205158 A G PDCD11 Missense_Mutation p.H1823R 0.30 deleterious(0) probably_damaging(0.979) TCGA-G4-6586-01 10 1053033 1053033 C T GTPBP4 Silent p.L360L 0.33 TCGA-G4-6586-01 10 105365574 105365574 C T SH3PXD2A Missense_Mutation p.R442Q 0.33 tolerated(0.86) benign(0.092) TCGA-G4-6586-01 10 112839932 112839934 TAT - ADRA2A 3'UTR 0.38 TCGA-G4-6586-01 10 115489224 115489224 C T CASP7 Silent p.D312D 0.27 TCGA-G4-6586-01 10 118434725 118434725 C T HSPA12A Missense_Mutation p.R532Q 0.35 deleterious(0.01) possibly_damaging(0.882) TCGA-G4-6586-01 10 119014854 119014854 C T SLC18A2 Missense_Mutation p.A256V 0.39 deleterious(0) probably_damaging(0.988) TCGA-G4-6586-01 10 12126671 12126671 A G DHTKD1 Missense_Mutation p.K148R 0.40 tolerated(0.68) benign(0.001) TCGA-G4-6586-01 10 121285567 121285568 - A RGS10 Frame_Shift_Ins p.K78* 0.29 TCGA-G4-6586-01 10 121663712 121663712 C T SEC23IP Missense_Mutation p.R342C 0.35 deleterious(0) probably_damaging(0.997) TCGA-G4-6586-01 10 123843356 123843356 G T TACC2 Missense_Mutation p.K447N 0.45 benign(0.05) TCGA-G4-6586-01 10 123844356 123844356 C - TACC2 Frame_Shift_Del p.Q783Rfs*32 0.36 TCGA-G4-6586-01 10 124648099 124648099 T C RP11-564D11.3 RNA 0.21 TCGA-G4-6586-01 10 125426035 125426035 C T GPR26 Missense_Mutation p.R38C 0.43 deleterious(0) probably_damaging(0.932) TCGA-G4-6586-01 10 129867992 129867992 C T PTPRE Silent p.I348I 0.31 TCGA-G4-6586-01 10 135085042 135085042 C G ADAM8 Missense_Mutation p.G425A 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 10 15296784 15296784 G A FAM171A1 Silent p.A171A 0.21 TCGA-G4-6586-01 10 25305013 25305013 A T ENKUR 5'UTR 0.35 TCGA-G4-6586-01 10 26377146 26377146 C A MYO3A Silent p.T458T 0.37 TCGA-G4-6586-01 10 29840116 29840116 G T SVIL Silent p.T79T 0.27 TCGA-G4-6586-01 10 30316107 30316107 C T KIAA1462 Silent p.A990A 0.38 TCGA-G4-6586-01 10 30915799 30915799 C A LYZL2 Missense_Mutation p.G62C 0.32 tolerated(0.15) benign(0.402) TCGA-G4-6586-01 10 31809256 31809256 G T ZEB1 Missense_Mutation p.K332N 0.33 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 10 428647 428647 C T DIP2C Missense_Mutation p.R644Q 0.26 deleterious(0.01) possibly_damaging(0.612) TCGA-G4-6586-01 10 47087651 47087651 T C NPY4R Missense_Mutation p.W290R 0.13 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 10 48414021 48414021 C T GDF2 Missense_Mutation p.V283M 0.33 tolerated(0.29) benign(0.033) TCGA-G4-6586-01 10 50723415 50723415 T C ERCC6-PGBD3 Silent p.L1050L 0.33 TCGA-G4-6586-01 10 50820698 50820698 C A SLC18A3 3'UTR 0.33 TCGA-G4-6586-01 10 51472558 51472558 A G AGAP7 Missense_Mutation p.I141T 0.18 tolerated_low_confidence(0.09) benign(0) TCGA-G4-6586-01 10 5415926 5415926 C - UCN3 Frame_Shift_Del p.I83Sfs*49 0.31 TCGA-G4-6586-01 10 60546761 60546761 A T BICC1 Nonsense_Mutation p.K156* 0.30 TCGA-G4-6586-01 10 61612427 61612427 T C CCDC6 Missense_Mutation p.S113G 0.30 deleterious(0) probably_damaging(0.996) TCGA-G4-6586-01 10 61959931 61959931 G A ANK3 Missense_Mutation p.R483W 0.28 probably_damaging(0.999) TCGA-G4-6586-01 10 62631214 62631215 - T RHOBTB1 3'UTR 0.30 TCGA-G4-6586-01 10 68535271 68535271 T - CTNNA3 Frame_Shift_Del p.E354Kfs*6 0.28 TCGA-G4-6586-01 10 71853557 71853557 G T H2AFY2 Nonsense_Mutation p.G182* 0.34 TCGA-G4-6586-01 10 73553197 73553197 G A CDH23 5'Flank 0.32 TCGA-G4-6586-01 10 73567165 73567165 T C CDH23 Splice_Site p.X530_splice 0.33 TCGA-G4-6586-01 10 74096311 74096311 C T DNAJB12 Missense_Mutation p.R360Q 0.45 tolerated(0.25) possibly_damaging(0.622) TCGA-G4-6586-01 10 75184935 75184935 G C MSS51 Missense_Mutation p.P362A 0.31 tolerated(0.59) benign(0.003) TCGA-G4-6586-01 10 75525559 75525560 - C SEC24C Frame_Shift_Ins p.Q459Pfs*17 0.35 TCGA-G4-6586-01 10 75553646 75553646 G A ZSWIM8 Silent p.T823T 0.30 TCGA-G4-6586-01 10 76360204 76360204 G A ADK Missense_Mutation p.R277Q 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 10 7772038 7772038 A C ITIH2 Missense_Mutation p.E468A 0.34 deleterious(0) possibly_damaging(0.639) TCGA-G4-6586-01 10 7791195 7791195 C T ITIH2 Silent p.D913D 0.36 TCGA-G4-6586-01 10 81070801 81070801 C T ZMIZ1 Missense_Mutation p.P986S 0.27 benign(0.01) TCGA-G4-6586-01 10 81072446 81072446 C - ZMIZ1 Frame_Shift_Del p.D1051Tfs*73 0.34 TCGA-G4-6586-01 10 85974038 85974038 G A CDHR1 Silent p.A747A 0.32 TCGA-G4-6586-01 10 87362022 87362022 C T GRID1 3'UTR 0.24 TCGA-G4-6586-01 10 87898641 87898641 G A GRID1 Missense_Mutation p.R221W 0.42 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 10 88768568 88768568 G T RP11-96C23.10 3'Flank 0.35 TCGA-G4-6586-01 10 91497375 91497375 A G KIF20B Missense_Mutation p.N886S 0.28 tolerated(0.86) benign(0.003) TCGA-G4-6586-01 10 91497542 91497542 A G KIF20B Missense_Mutation p.I942V 0.33 deleterious(0.04) possibly_damaging(0.69) TCGA-G4-6586-01 10 95241991 95241991 T C MYOF 5'Flank 0.40 TCGA-G4-6586-01 10 96352192 96352192 T C HELLS Missense_Mutation p.L631S 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6586-01 10 97779545 97779545 A - CC2D2B Frame_Shift_Del p.N250Tfs*15 0.30 TCGA-G4-6586-01 10 97983656 97983656 A C BLNK Missense_Mutation p.S151A 0.31 tolerated(0.2) benign(0.003) TCGA-G4-6586-01 10 98170323 98170323 T G TLL2 Intron 0.25 TCGA-G4-6586-01 10 99439624 99439625 - G AVPI1 Frame_Shift_Ins p.W14Lfs*6 0.38 TCGA-G4-6586-01 10 99639523 99639523 C T CRTAC1 Intron 0.30 TCGA-G4-6586-01 10 99661339 99661339 C T CRTAC1 Missense_Mutation p.D352N 0.41 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 10 99696033 99696033 G A CRTAC1 Silent p.Y105Y 0.34 TCGA-G4-6586-01 11 101359672 101359672 C A TRPC6 Missense_Mutation p.S430I 0.41 deleterious(0) probably_damaging(0.993) TCGA-G4-6586-01 11 101362287 101362287 T - TRPC6 Frame_Shift_Del p.K376Nfs*3 0.33 TCGA-G4-6586-01 11 102647057 102647057 C T MMP10 Missense_Mutation p.D296N 0.42 deleterious(0) probably_damaging(0.997) TCGA-G4-6586-01 11 102662154 102662154 C T MMP1 Missense_Mutation p.G369D 0.27 deleterious(0) probably_damaging(0.989) TCGA-G4-6586-01 11 106680853 106680853 C T GUCY1A2 Missense_Mutation p.V520I 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 11 107207381 107207381 A - CWF19L2 Frame_Shift_Del p.L754Wfs*5 0.27 TCGA-G4-6586-01 11 1093527 1093527 C T MUC2 Silent p.P1782P 0.10 TCGA-G4-6586-01 11 110007562 110007562 C A ZC3H12C Missense_Mutation p.P66T 0.44 tolerated(0.31) benign(0.001) TCGA-G4-6586-01 11 110035291 110035291 G A ZC3H12C Missense_Mutation p.S494N 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-G4-6586-01 11 110134733 110134733 T G RDX Missense_Mutation p.E140A 0.34 tolerated(0.26) benign(0.054) TCGA-G4-6586-01 11 111420386 111420386 G A LAYN Missense_Mutation p.V151M 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 11 111789615 111789615 C T C11orf52 5'UTR 0.45 TCGA-G4-6586-01 11 113934294 113934294 C T ZBTB16 Missense_Mutation p.T91M 0.35 deleterious(0) probably_damaging(0.982) TCGA-G4-6586-01 11 117667817 117667817 C T DSCAML1 Missense_Mutation p.R53Q 0.43 tolerated_low_confidence(0.3) unknown(0) TCGA-G4-6586-01 11 118851223 118851223 C T FOXR1 Missense_Mutation p.T212M 0.35 deleterious(0.03) possibly_damaging(0.672) TCGA-G4-6586-01 11 119510691 119510691 A G RP11-196E1.3 RNA 0.30 TCGA-G4-6586-01 11 120312501 120312501 T C ARHGEF12 Missense_Mutation p.V393A 0.32 tolerated(0.18) possibly_damaging(0.755) TCGA-G4-6586-01 11 12315195 12315195 G T MICALCL Nonsense_Mutation p.G73* 0.43 TCGA-G4-6586-01 11 123908787 123908787 C A OR10G7 Missense_Mutation p.A308S 0.38 tolerated(1) benign(0) TCGA-G4-6586-01 11 124744799 124744799 C A ROBO3 Silent p.S689S 0.37 TCGA-G4-6586-01 11 124756981 124756981 C T ROBO4 Missense_Mutation p.R776H 0.31 tolerated(0.29) benign(0) TCGA-G4-6586-01 11 126301339 126301339 C T KIRREL3 Silent p.A557A 0.36 TCGA-G4-6586-01 11 128564033 128564033 C T FLI1 5'UTR 0.60 TCGA-G4-6586-01 11 128628057 128628057 G A FLI1 Silent p.A22A 0.33 TCGA-G4-6586-01 11 128772405 128772405 T C C11orf45 3'UTR 0.09 TCGA-G4-6586-01 11 134048586 134048586 G - NCAPD3 Frame_Shift_Del p.Q909Rfs*10 0.32 TCGA-G4-6586-01 11 14825499 14825499 C T PDE3B Silent p.C475C 0.33 TCGA-G4-6586-01 11 15243134 15243134 G A INSC Missense_Mutation p.V358I 0.36 tolerated(0.4) benign(0.004) TCGA-G4-6586-01 11 17546068 17546068 G T USH1C Missense_Mutation p.P230H 0.07 deleterious(0.01) probably_damaging(1) TCGA-G4-6586-01 11 17803275 17803275 G A KCNC1 Silent p.V584V 0.40 TCGA-G4-6586-01 11 19259575 19259575 G A E2F8 Silent p.G40G 0.29 TCGA-G4-6586-01 11 20652292 20652292 G A SLC6A5 Missense_Mutation p.V519I 0.34 deleterious(0.02) probably_damaging(0.987) TCGA-G4-6586-01 11 2444213 2444213 C T TRPM5 Silent p.R18R 0.19 TCGA-G4-6586-01 11 3123436 3123436 G A OSBPL5 Missense_Mutation p.R468C 0.11 tolerated(0.29) benign(0.005) TCGA-G4-6586-01 11 35684713 35684713 T C TRIM44 Silent p.C18C 0.42 TCGA-G4-6586-01 11 36599931 36599931 T - RAG1 3'UTR 0.32 TCGA-G4-6586-01 11 43418147 43418149 TCT - TTC17 Intron 0.40 TCGA-G4-6586-01 11 4621796 4621796 G - TRIM68 Frame_Shift_Del p.H390Tfs*6 0.30 TCGA-G4-6586-01 11 46341871 46341871 C T CREB3L1 Missense_Mutation p.R439C 0.36 tolerated(0.17) benign(0.386) TCGA-G4-6586-01 11 47381538 47381538 C T SPI1 Missense_Mutation p.A67T 0.37 tolerated(0.43) benign(0.002) TCGA-G4-6586-01 11 48328626 48328626 C T OR4S1 Silent p.I284I 0.36 TCGA-G4-6586-01 11 48346746 48346747 - T OR4C3 Frame_Shift_Ins p.L88Pfs*8 0.21 TCGA-G4-6586-01 11 49597651 49597651 C A RP11-707M1.1 RNA 0.38 TCGA-G4-6586-01 11 55136121 55136121 G T OR4A15 Missense_Mutation p.K254N 0.18 deleterious_low_confidence(0.01) probably_damaging(0.933) TCGA-G4-6586-01 11 55563501 55563501 G T OR5D14 Missense_Mutation p.G157V 0.32 deleterious(0.01) benign(0.014) TCGA-G4-6586-01 11 56113897 56113897 G A OR8K1 Missense_Mutation p.R128H 0.34 tolerated_low_confidence(0.05) benign(0.224) TCGA-G4-6586-01 11 56230447 56230447 G T OR5M9 Missense_Mutation p.S144Y 0.34 deleterious(0.05) benign(0.076) TCGA-G4-6586-01 11 57076705 57076705 G A TNKS1BP1 Silent p.D1160D 0.22 TCGA-G4-6586-01 11 57081343 57081343 G T TNKS1BP1 Silent p.P273P 0.37 TCGA-G4-6586-01 11 57156097 57156097 C T PRG2 Missense_Mutation p.A151T 0.31 tolerated(0.73) benign(0.002) TCGA-G4-6586-01 11 57958227 57958227 G A OR9Q2 Missense_Mutation p.G89S 0.36 tolerated(0.3) probably_damaging(0.931) TCGA-G4-6586-01 11 58958592 58958592 A C DTX4 Missense_Mutation p.T389P 0.33 deleterious(0.05) benign(0.077) TCGA-G4-6586-01 11 592566 592566 T C PHRF1 Missense_Mutation p.V171A 0.28 deleterious(0) possibly_damaging(0.706) TCGA-G4-6586-01 11 60621092 60621092 G A PTGDR2 Missense_Mutation p.A35V 0.34 tolerated(1) benign(0.002) TCGA-G4-6586-01 11 60886789 60886789 G T CD5 Missense_Mutation p.G183C 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 11 60900013 60900013 T G VPS37C Splice_Site p.X117_splice 0.36 TCGA-G4-6586-01 11 61183883 61183884 - T CPSF7 Frame_Shift_Ins p.S263Kfs*99 0.20 TCGA-G4-6586-01 11 61213623 61213623 T G SDHAF2 3'UTR 0.50 TCGA-G4-6586-01 11 61404330 61404330 T C RPLP0P2 RNA 0.37 TCGA-G4-6586-01 11 61727461 61727461 C A BEST1 Missense_Mutation p.A289D 0.33 tolerated(0.05) probably_damaging(0.956) TCGA-G4-6586-01 11 618899 618900 - G CDHR5 Frame_Shift_Ins p.G554Rfs*161 0.29 TCGA-G4-6586-01 11 62415703 62415703 G T INTS5 Missense_Mutation p.P617T 0.33 tolerated(0.59) benign(0.039) TCGA-G4-6586-01 11 62655842 62655842 C T SLC3A2 Missense_Mutation p.R525W 0.35 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 11 63782730 63782730 C T MACROD1 Missense_Mutation p.G181S 0.35 deleterious(0) possibly_damaging(0.449) TCGA-G4-6586-01 11 63886076 63886079 TTTC - FLRT1 3'UTR 0.30 TCGA-G4-6586-01 11 63979204 63979204 C T FERMT3 Silent p.F257F 0.31 TCGA-G4-6586-01 11 64132852 64132852 G A RPS6KA4 Missense_Mutation p.G329D 0.34 tolerated(0.11) benign(0.309) TCGA-G4-6586-01 11 64520992 64520992 T C PYGM Missense_Mutation p.I468V 0.24 tolerated(1) benign(0.001) TCGA-G4-6586-01 11 64707170 64707170 T C C11orf85 Missense_Mutation p.R206G 0.10 deleterious_low_confidence(0.01) benign(0.291) TCGA-G4-6586-01 11 64813226 64813226 G A NAALADL1 Intron 0.33 TCGA-G4-6586-01 11 64875877 64875877 G T VPS51 Missense_Mutation p.V312L 0.35 tolerated(1) benign(0.01) TCGA-G4-6586-01 11 64938885 64938885 G - SPDYC Frame_Shift_Del p.G40Afs*62 0.28 TCGA-G4-6586-01 11 65366953 65366953 C T MAP3K11 Silent p.P706P 0.09 TCGA-G4-6586-01 11 65383815 65383815 G - PCNXL3 Frame_Shift_Del p.V13Cfs*45 0.28 TCGA-G4-6586-01 11 65404347 65404347 C A PCNXL3 Silent p.A2001A 0.37 TCGA-G4-6586-01 11 65638736 65638736 C T EFEMP2 Missense_Mutation p.V87I 0.28 tolerated(0.67) benign(0.044) TCGA-G4-6586-01 11 65660583 65660583 C T FOSL1 Missense_Mutation p.R197H 0.26 tolerated(0.1) benign(0.374) TCGA-G4-6586-01 11 65819906 65819906 G A SF3B2 Silent p.P17P 0.43 TCGA-G4-6586-01 11 66029646 66029646 A G KLC2 Missense_Mutation p.E171G 0.37 tolerated(0.05) possibly_damaging(0.813) TCGA-G4-6586-01 11 66100758 66100758 G A RIN1 Missense_Mutation p.R616C 0.21 deleterious(0) probably_damaging(0.991) TCGA-G4-6586-01 11 66330311 66330311 C T CTSF 3'Flank 0.29 TCGA-G4-6586-01 11 6662039 6662039 G A DCHS1 Missense_Mutation p.A269V 0.38 tolerated(0.18) benign(0.207) TCGA-G4-6586-01 11 6662179 6662179 C T DCHS1 Missense_Mutation p.M222I 0.39 tolerated(0.05) benign(0.145) TCGA-G4-6586-01 11 66743038 66743038 C A C11orf86 Missense_Mutation p.L69M 0.30 tolerated(0.13) possibly_damaging(0.483) TCGA-G4-6586-01 11 67226189 67226189 T C CABP4 3'UTR 0.39 TCGA-G4-6586-01 11 67269791 67269791 G A PITPNM1 Silent p.S129S 0.24 TCGA-G4-6586-01 11 67412828 67412828 G T ACY3 Nonsense_Mutation p.C152* 0.31 TCGA-G4-6586-01 11 68191118 68191119 - G LRP5 Frame_Shift_Ins p.D1065Gfs*73 0.33 TCGA-G4-6586-01 11 68748335 68748335 C A MRGPRD Missense_Mutation p.G41W 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 11 70281208 70281208 C T CTTN Silent p.R494R 0.38 TCGA-G4-6586-01 11 70333647 70333647 G A SHANK2 Silent p.Y918Y 0.34 TCGA-G4-6586-01 11 71707529 71707529 C T RNF121 3'UTR 0.33 TCGA-G4-6586-01 11 71707543 71707543 A G RNF121 3'UTR 0.25 TCGA-G4-6586-01 11 71907153 71907153 G A FOLR1 Missense_Mutation p.A236T 0.32 tolerated(0.12) unknown(0) TCGA-G4-6586-01 11 76227322 76227322 G - C11orf30 Frame_Shift_Del p.G552Afs*3 0.27 TCGA-G4-6586-01 11 763367 763367 T C TALDO1 Missense_Mutation p.I162T 0.43 deleterious(0) probably_damaging(0.946) TCGA-G4-6586-01 11 76892447 76892447 C T MYO7A Missense_Mutation p.R906C 0.41 deleterious(0.01) possibly_damaging(0.901) TCGA-G4-6586-01 11 82947450 82947450 T C ANKRD42 Silent p.A278A 0.34 TCGA-G4-6586-01 11 8435222 8435222 C T STK33 Silent p.S388S 0.32 TCGA-G4-6586-01 11 85692992 85692992 T A PICALM Missense_Mutation p.N524I 0.36 tolerated(0.08) benign(0.049) TCGA-G4-6586-01 11 8737163 8737163 C T ST5 Missense_Mutation p.R611H 0.40 deleterious(0.01) possibly_damaging(0.667) TCGA-G4-6586-01 11 8751662 8751662 C T ST5 Missense_Mutation p.R392H 0.38 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 11 9172291 9172291 G A DENND5A Missense_Mutation p.R848C 0.43 deleterious(0) probably_damaging(0.977) TCGA-G4-6586-01 11 92616056 92616056 C T FAT3 Missense_Mutation p.A4145V 0.36 benign(0.14) TCGA-G4-6586-01 11 94281111 94281114 CTTC - FUT4 3'UTR 0.41 TCGA-G4-6586-01 11 95571362 95571362 C T MTMR2 Missense_Mutation p.A497T 0.26 deleterious(0.02) benign(0.026) TCGA-G4-6586-01 12 100613799 100613799 T - ACTR6 Frame_Shift_Del p.F314Lfs*6 0.29 TCGA-G4-6586-01 12 101584322 101584322 A G SLC5A8 Missense_Mutation p.W253R 0.17 deleterious(0) probably_damaging(0.991) TCGA-G4-6586-01 12 101761747 101761747 A G UTP20 Missense_Mutation p.D2126G 0.33 tolerated(0.2) benign(0.15) TCGA-G4-6586-01 12 104476681 104476681 T C HCFC2 Splice_Site p.X355_splice 0.15 TCGA-G4-6586-01 12 11036853 11036853 C T PRH1 5'UTR 0.23 TCGA-G4-6586-01 12 111742033 111742033 G A CUX2 Missense_Mutation p.R258Q 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6586-01 12 111748024 111748024 C T CUX2 Missense_Mutation p.P480S 0.32 tolerated(0.16) probably_damaging(0.989) TCGA-G4-6586-01 12 112669336 112669336 T C HECTD4 Missense_Mutation p.R1915G 0.38 possibly_damaging(0.884) TCGA-G4-6586-01 12 113553825 113553825 G A RASAL1 Missense_Mutation p.R255C 0.33 deleterious(0.04) probably_damaging(0.988) TCGA-G4-6586-01 12 113593173 113593173 G T CCDC42B Missense_Mutation p.G267W 0.21 deleterious(0.01) possibly_damaging(0.781) TCGA-G4-6586-01 12 114841708 114841708 C T TBX5 5'UTR 0.45 TCGA-G4-6586-01 12 117013720 117013720 T C MAP1LC3B2 5'UTR 0.36 TCGA-G4-6586-01 12 117476874 117476874 C T TESC 3'UTR 0.38 TCGA-G4-6586-01 12 118298169 118298169 T A KSR2 Missense_Mutation p.N83I 0.21 tolerated(0.06) benign(0.055) TCGA-G4-6586-01 12 118508858 118508858 T C VSIG10 Missense_Mutation p.R449G 0.36 deleterious(0) possibly_damaging(0.613) TCGA-G4-6586-01 12 121855416 121855416 G A RNF34 Missense_Mutation p.R113H 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 12 122439487 122439487 C T WDR66 Missense_Mutation p.A1107V 0.33 tolerated(0.11) benign(0.015) TCGA-G4-6586-01 12 122685442 122685442 G A LRRC43 Silent p.V590V 0.33 TCGA-G4-6586-01 12 123187042 123187042 C T HCAR2 Silent p.T263T 0.32 TCGA-G4-6586-01 12 123200496 123200496 C T HCAR3 Silent p.T263T 0.33 TCGA-G4-6586-01 12 124393939 124393939 T C DNAH10 Missense_Mutation p.M3198T 0.28 benign(0.035) TCGA-G4-6586-01 12 124887093 124887093 C T NCOR2 Silent p.Q499Q 0.27 TCGA-G4-6586-01 12 129190465 129190465 G - TMEM132C Frame_Shift_Del p.D986Mfs*13 0.29 TCGA-G4-6586-01 12 130921762 130921762 C A RIMBP2 Missense_Mutation p.K560N 0.39 deleterious(0) possibly_damaging(0.709) TCGA-G4-6586-01 12 131490582 131490582 G A GPR133 Missense_Mutation p.A441T 0.48 tolerated(0.41) benign(0.01) TCGA-G4-6586-01 12 132281845 132281845 C T SFSWAP Missense_Mutation p.S938L 0.62 tolerated_low_confidence(0.12) unknown(0) TCGA-G4-6586-01 12 132394486 132394486 C T ULK1 Missense_Mutation p.P250S 0.38 tolerated(0.1) benign(0.403) TCGA-G4-6586-01 12 132403814 132403814 G A ULK1 Missense_Mutation p.V857I 0.40 tolerated(0.22) benign(0.021) TCGA-G4-6586-01 12 133084851 133084851 G A FBRSL1 Missense_Mutation p.R135Q 0.35 tolerated(0.57) benign(0.03) TCGA-G4-6586-01 12 14018892 14018892 C T GRIN2B Missense_Mutation p.R84H 0.55 tolerated(0.6) possibly_damaging(0.741) TCGA-G4-6586-01 12 15095480 15095480 C T ARHGDIB Silent p.S194S 0.52 TCGA-G4-6586-01 12 18491390 18491390 A - PIK3C2G Frame_Shift_Del p.I437Yfs*5 0.32 TCGA-G4-6586-01 12 20522723 20522723 G - PDE3A Frame_Shift_Del p.E171Kfs*36 0.30 TCGA-G4-6586-01 12 20522876 20522876 G A PDE3A Missense_Mutation p.A220T 0.44 tolerated(0.26) benign(0.124) TCGA-G4-6586-01 12 266837 266837 A C IQSEC3 Missense_Mutation p.E807A 0.30 deleterious(0.01) probably_damaging(0.973) TCGA-G4-6586-01 12 27126964 27126964 T C TM7SF3 Silent p.L549L 0.26 TCGA-G4-6586-01 12 27924100 27924100 C T MANSC4 Missense_Mutation p.R37H 0.24 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 12 28637053 28637053 A G CCDC91 Silent p.K390K 0.08 TCGA-G4-6586-01 12 30864532 30864532 C T CAPRIN2 Missense_Mutation p.G878E 0.28 deleterious(0) possibly_damaging(0.615) TCGA-G4-6586-01 12 30888084 30888084 A G CAPRIN2 Silent p.A209A 0.41 TCGA-G4-6586-01 12 31237964 31237964 G A DDX11 Missense_Mutation p.G181D 0.27 tolerated(0.11) benign(0.299) TCGA-G4-6586-01 12 3390367 3390367 C T TSPAN9 Nonsense_Mutation p.R146* 0.39 TCGA-G4-6586-01 12 46123921 46123921 G A ARID2 Splice_Site p.X62_splice 0.28 TCGA-G4-6586-01 12 46599923 46599923 C T SLC38A1 Missense_Mutation p.V196I 0.24 tolerated(0.13) benign(0.001) TCGA-G4-6586-01 12 47628998 47628998 G - PCED1B Frame_Shift_Del p.E53Sfs*2 0.38 TCGA-G4-6586-01 12 4922146 4922146 T C KCNA6 3'UTR 0.27 TCGA-G4-6586-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.29 TCGA-G4-6586-01 12 49420326 49420326 G A KMT2D Silent p.P5141P 0.40 TCGA-G4-6586-01 12 49425037 49425037 C T KMT2D Missense_Mutation p.R4484Q 0.40 unknown(0) TCGA-G4-6586-01 12 49943396 49943396 G A KCNH3 Silent p.A547A 0.34 TCGA-G4-6586-01 12 50189952 50189952 C T NCKAP5L Missense_Mutation p.R564Q 0.46 tolerated(0.36) possibly_damaging(0.759) TCGA-G4-6586-01 12 50264246 50264246 G C FAIM2 3'UTR 0.32 TCGA-G4-6586-01 12 51207887 51207887 T C ATF1 Silent p.S141S 0.30 TCGA-G4-6586-01 12 51392999 51392999 A - SLC11A2 Frame_Shift_Del p.F240Lfs*19 0.35 TCGA-G4-6586-01 12 52282036 52282036 C T ANKRD33 Silent p.F22F 0.29 TCGA-G4-6586-01 12 52962105 52962105 C A KRT74 Missense_Mutation p.Q401H 0.39 deleterious(0.04) possibly_damaging(0.608) TCGA-G4-6586-01 12 54799470 54799470 C T ITGA5 Missense_Mutation p.A332T 0.33 tolerated(0.32) possibly_damaging(0.645) TCGA-G4-6586-01 12 54982251 54982251 G A PPP1R1A Nonsense_Mutation p.R8* 0.27 TCGA-G4-6586-01 12 56087863 56087863 C T ITGA7 Missense_Mutation p.G830D 0.31 deleterious(0) probably_damaging(0.981) TCGA-G4-6586-01 12 56435861 56435861 A C RPS26 5'UTR 0.37 TCGA-G4-6586-01 12 56514991 56514991 C - ZC3H10 Frame_Shift_Del p.P217Lfs*24 0.37 TCGA-G4-6586-01 12 56995681 56995686 CTGAAG - BAZ2A In_Frame_Del p.L1241_Q1242del 0.27 TCGA-G4-6586-01 12 57431762 57431762 C T MYO1A Missense_Mutation p.V618I 0.15 tolerated(0.08) possibly_damaging(0.514) TCGA-G4-6586-01 12 57625291 57625291 G A SHMT2 Missense_Mutation p.A87T 0.36 deleterious(0.02) possibly_damaging(0.88) TCGA-G4-6586-01 12 58025103 58025103 C - B4GALNT1 Frame_Shift_Del p.G88Afs*24 0.37 TCGA-G4-6586-01 12 6127983 6127983 C T VWF Missense_Mutation p.S1534N 0.21 tolerated(0.56) benign(0.002) TCGA-G4-6586-01 12 6220099 6220099 C T VWF Missense_Mutation p.V86M 0.29 deleterious(0) probably_damaging(0.997) TCGA-G4-6586-01 12 63954236 63954236 G T DPY19L2 3'UTR 0.22 TCGA-G4-6586-01 12 64823869 64823869 T - XPOT Frame_Shift_Del p.F594Lfs*9 0.27 TCGA-G4-6586-01 12 6495298 6495298 C - LTBR Frame_Shift_Del p.S182Afs*33 0.28 TCGA-G4-6586-01 12 65672614 65672614 C T MSRB3 Silent p.C22C 0.32 TCGA-G4-6586-01 12 68054887 68054890 TTTC - DYRK2 3'UTR 0.48 TCGA-G4-6586-01 12 69652532 69652532 A G CPSF6 Missense_Mutation p.Q286R 0.27 tolerated(0.44) unknown(0) TCGA-G4-6586-01 12 70723241 70723241 A G CNOT2 Missense_Mutation p.T93A 0.45 tolerated_low_confidence(0.5) benign(0.001) TCGA-G4-6586-01 12 71029694 71029694 C T PTPRB Missense_Mutation p.A70T 0.27 deleterious_low_confidence(0.05) benign(0.075) TCGA-G4-6586-01 12 7476133 7476133 T - ACSM4 Frame_Shift_Del p.F429Sfs*18 0.32 TCGA-G4-6586-01 12 75693617 75693617 C T CAPS2 Missense_Mutation p.R304H 0.33 deleterious(0) probably_damaging(0.994) TCGA-G4-6586-01 12 77440063 77440063 G A E2F7 Missense_Mutation p.S195L 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 12 79693163 79693163 G T SYT1 Splice_Site p.X215_splice 0.35 TCGA-G4-6586-01 12 7982600 7982600 C T SLC2A14 Missense_Mutation p.R115H 0.42 tolerated(0.09) benign(0.321) TCGA-G4-6586-01 12 81102750 81102750 G A MYF6 3'UTR 0.27 TCGA-G4-6586-01 12 91348874 91348874 G - CCER1 5'UTR 0.30 TCGA-G4-6586-01 12 93172966 93172966 C T EEA1 Silent p.Q1193Q 0.33 TCGA-G4-6586-01 12 94543544 94543544 G A PLXNC1 Missense_Mutation p.R266H 0.33 tolerated(0.13) possibly_damaging(0.887) TCGA-G4-6586-01 12 95397390 95397390 A G NDUFA12 Missense_Mutation p.Y23H 0.29 tolerated(0.53) benign(0.235) TCGA-G4-6586-01 12 95911790 95911790 A - USP44 3'UTR 0.60 TCGA-G4-6586-01 12 98850820 98850820 A G SLC9A7P1 RNA 0.20 TCGA-G4-6586-01 12 99139443 99139443 G A ANKS1B Intron 0.37 TCGA-G4-6586-01 13 101077925 101077925 G A PCCA Silent p.T595T 0.23 TCGA-G4-6586-01 13 103386506 103386506 C A CCDC168 Missense_Mutation p.R885M 0.06 deleterious(0.03) possibly_damaging(0.702) TCGA-G4-6586-01 13 108861169 108861169 G C LIG4 Missense_Mutation p.H816Q 0.22 tolerated(0.29) benign(0.284) TCGA-G4-6586-01 13 108886064 108886064 C T ABHD13 3'UTR 0.14 TCGA-G4-6586-01 13 109535512 109535512 C T MYO16 Missense_Mutation p.R489W 0.27 deleterious(0) probably_damaging(0.977) TCGA-G4-6586-01 13 109672130 109672130 A - MYO16 Frame_Shift_Del p.K869Nfs*6 0.24 TCGA-G4-6586-01 13 109779895 109779895 G A MYO16 Missense_Mutation p.E1328K 0.50 deleterious(0.04) benign(0.426) TCGA-G4-6586-01 13 110864005 110864005 G T COL4A1 Missense_Mutation p.P153T 0.31 unknown(0) TCGA-G4-6586-01 13 113765033 113765033 G A F7 Missense_Mutation p.V54I 0.26 tolerated(0.2) benign(0.022) TCGA-G4-6586-01 13 113771150 113771150 G - F7 Frame_Shift_Del p.G216Afs*17 0.18 TCGA-G4-6586-01 13 113803516 113803516 C T F10 Silent p.Y384Y 0.29 TCGA-G4-6586-01 13 114204140 114204140 T C TMCO3 3'UTR 0.28 TCGA-G4-6586-01 13 114523858 114523858 G - GAS6 Frame_Shift_Del p.V673Wfs*85 0.43 TCGA-G4-6586-01 13 115038050 115038050 C T CDC16 3'UTR 0.43 TCGA-G4-6586-01 13 19748276 19748276 G - TUBA3C Frame_Shift_Del p.T361Rfs*18 0.20 TCGA-G4-6586-01 13 20056687 20056687 A T TPTE2 Missense_Mutation p.S40R 0.09 tolerated_low_confidence(0.07) benign(0.002) TCGA-G4-6586-01 13 23909222 23909222 T - SACS Frame_Shift_Del p.K2931Nfs*22 0.22 TCGA-G4-6586-01 13 24860489 24860489 C T SPATA13 Silent p.R813R 0.10 TCGA-G4-6586-01 13 25823359 25823359 A C MTMR6 3'UTR 0.22 TCGA-G4-6586-01 13 26151250 26151250 C T ATP8A2 Nonsense_Mutation p.R586* 0.17 TCGA-G4-6586-01 13 28537278 28537278 C - CDX2 Frame_Shift_Del p.V306Cfs*2 0.32 TCGA-G4-6586-01 13 29933591 29933591 C T MTUS2 Missense_Mutation p.T1043M 0.18 deleterious(0.02) benign(0.177) TCGA-G4-6586-01 13 30062051 30062051 C T MTUS2 Silent p.T1148T 0.26 TCGA-G4-6586-01 13 30071388 30071388 C T MTUS2 Missense_Mutation p.T1208M 0.34 tolerated(0.07) possibly_damaging(0.712) TCGA-G4-6586-01 13 31035356 31035356 A - HMGB1 3'UTR 0.19 TCGA-G4-6586-01 13 33344869 33344869 C T PDS5B Missense_Mutation p.T1381M 0.21 tolerated_low_confidence(0.11) benign(0.011) TCGA-G4-6586-01 13 33701631 33701631 C A STARD13 Missense_Mutation p.A601S 0.20 tolerated(0.13) benign(0.063) TCGA-G4-6586-01 13 33704106 33704106 G - STARD13 Frame_Shift_Del p.R237Efs*24 0.29 TCGA-G4-6586-01 13 36026371 36026371 A T NBEA Silent p.A2149A 0.28 TCGA-G4-6586-01 13 36049985 36049985 G A MAB21L1 Silent p.C97C 0.32 TCGA-G4-6586-01 13 37422679 37422679 A - SMAD9 3'UTR 0.37 TCGA-G4-6586-01 13 39261909 39261909 C T FREM2 Missense_Mutation p.A143V 0.40 deleterious(0.01) possibly_damaging(0.548) TCGA-G4-6586-01 13 39262156 39262156 C T FREM2 Silent p.G225G 0.30 TCGA-G4-6586-01 13 39263864 39263864 G A FREM2 Missense_Mutation p.V795M 0.44 deleterious(0) possibly_damaging(0.551) TCGA-G4-6586-01 13 41932520 41932520 T C NAA16 Missense_Mutation p.Y390H 0.09 tolerated(0.54) benign(0.003) TCGA-G4-6586-01 13 43462545 43462545 G A EPSTI1 Silent p.S358S 0.21 TCGA-G4-6586-01 13 48654028 48654028 C T MED4 Missense_Mutation p.V198M 0.28 tolerated(0.22) benign(0.053) TCGA-G4-6586-01 13 48922000 48922000 G A RB1 Splice_Site p.X180_splice 0.31 TCGA-G4-6586-01 13 49781606 49781607 - A FNDC3A 3'UTR 0.16 TCGA-G4-6586-01 13 52639580 52639580 G A NEK5 Missense_Mutation p.T697I 0.20 tolerated_low_confidence(0.29) benign(0.002) TCGA-G4-6586-01 13 58207013 58207013 C T PCDH17 Silent p.N111N 0.25 TCGA-G4-6586-01 13 61987617 61987617 G A PCDH20 Silent p.N205N 0.24 TCGA-G4-6586-01 13 67800508 67800508 G - PCDH9 Frame_Shift_Del p.L689Sfs*9 0.22 TCGA-G4-6586-01 13 72440983 72440983 A - DACH1 5'UTR 0.16 TCGA-G4-6586-01 13 73346888 73346888 A G DIS3 Silent p.P443P 0.22 TCGA-G4-6586-01 13 77459632 77459632 A G KCTD12 Missense_Mutation p.Y218H 0.21 tolerated(0.12) benign(0.036) TCGA-G4-6586-01 13 77636817 77636817 C T MYCBP2 Missense_Mutation p.A4192T 0.20 probably_damaging(0.986) TCGA-G4-6586-01 13 77699498 77699498 C T MYCBP2 Missense_Mutation p.G2626R 0.26 probably_damaging(0.989) TCGA-G4-6586-01 13 79233247 79233247 C T RNF219 Silent p.Q3Q 0.26 TCGA-G4-6586-01 13 98829234 98829234 G A RNF113B Missense_Mutation p.A86V 0.27 tolerated(0.2) benign(0.006) TCGA-G4-6586-01 13 98829245 98829245 G A RNF113B Silent p.G82G 0.30 TCGA-G4-6586-01 13 99460062 99460062 C A DOCK9 Splice_Site p.X1804_splice 0.19 TCGA-G4-6586-01 14 102695698 102695698 A G MOK Silent p.D396D 0.34 TCGA-G4-6586-01 14 102964536 102964536 G A TECPR2 Missense_Mutation p.S1393N 0.57 tolerated(0.4) benign(0.003) TCGA-G4-6586-01 14 103592913 103592913 T C TNFAIP2 Missense_Mutation p.L40P 0.34 deleterious(0) probably_damaging(0.985) TCGA-G4-6586-01 14 103803520 103803520 A G EIF5 Missense_Mutation p.D132G 0.32 deleterious(0.01) probably_damaging(0.945) TCGA-G4-6586-01 14 104056529 104056529 A C APOPT1 Missense_Mutation p.K176T 0.15 deleterious(0) probably_damaging(0.932) TCGA-G4-6586-01 14 104633303 104633303 T C KIF26A Missense_Mutation p.L344P 0.37 deleterious(0) probably_damaging(0.915) TCGA-G4-6586-01 14 104642699 104642699 C T KIF26A Missense_Mutation p.P1192S 0.48 tolerated(0.84) benign(0.012) TCGA-G4-6586-01 14 105207568 105207568 G A ADSSL1 Missense_Mutation p.D304N 0.32 deleterious(0) probably_damaging(0.984) TCGA-G4-6586-01 14 105242063 105242063 G A AKT1 Missense_Mutation p.R121W 0.30 deleterious(0.01) benign(0.004) TCGA-G4-6586-01 14 105517311 105517311 C - GPR132 3'UTR 0.34 TCGA-G4-6586-01 14 107170012 107170012 G A IGHV1-69 Silent p.T90T 0.28 TCGA-G4-6586-01 14 20296130 20296130 G T OR4N2 Missense_Mutation p.D175Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 14 20482660 20482660 G T OR4K14 Silent p.A231A 0.32 TCGA-G4-6586-01 14 21109523 21109523 C T OR6S1 Missense_Mutation p.G110R 0.45 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 14 21561799 21561799 A - ZNF219 5'UTR 0.25 TCGA-G4-6586-01 14 21793442 21793443 - C RPGRIP1 Frame_Shift_Ins p.I758Hfs*10 0.30 TCGA-G4-6586-01 14 21963387 21963387 G - TOX4 Splice_Site p.X548_splice 0.27 TCGA-G4-6586-01 14 23239108 23239108 T A OXA1L Missense_Mutation p.I243N 0.07 deleterious(0) possibly_damaging(0.622) TCGA-G4-6586-01 14 23394171 23394171 A G PRMT5 Missense_Mutation p.Y286H 0.37 tolerated(0.71) benign(0.023) TCGA-G4-6586-01 14 23395964 23395964 A G PRMT5 Silent p.N170N 0.32 TCGA-G4-6586-01 14 23398570 23398570 T C PRMT5 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) unknown(0) TCGA-G4-6586-01 14 23456442 23456442 C T C14orf93 Silent p.K533K 0.29 TCGA-G4-6586-01 14 23821250 23821250 C T SLC22A17 Silent p.S58S 0.26 TCGA-G4-6586-01 14 24572856 24572856 C T PCK2 Missense_Mutation p.R536W 0.28 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 14 24648822 24648822 G A REC8 Silent p.A446A 0.23 TCGA-G4-6586-01 14 45665613 45665613 G A FANCM Missense_Mutation p.R1860H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 14 50998677 50998677 A G MAP4K5 Missense_Mutation p.Y31H 0.08 deleterious(0) probably_damaging(0.985) TCGA-G4-6586-01 14 51194342 51194342 G A NIN Intron 0.21 TCGA-G4-6586-01 14 51245507 51245507 G A NIN Missense_Mutation p.R151C 0.34 tolerated(0.05) possibly_damaging(0.84) TCGA-G4-6586-01 14 58924650 58924650 A C KIAA0586 Missense_Mutation p.K565N 0.29 tolerated(0.07) probably_damaging(0.991) TCGA-G4-6586-01 14 59114530 59114530 G A DACT1 3'Flank 0.39 TCGA-G4-6586-01 14 59950605 59950605 C T L3HYPDH Missense_Mutation p.A144T 0.62 tolerated(0.06) benign(0.148) TCGA-G4-6586-01 14 61438980 61438980 C T TRMT5 3'UTR 0.36 TCGA-G4-6586-01 14 62014535 62014535 T - RP11-47I22.4 Frame_Shift_Del p.F119Lfs*9 0.29 TCGA-G4-6586-01 14 63447926 63447926 C T KCNH5 Silent p.T202T 0.37 TCGA-G4-6586-01 14 65007658 65007658 G A HSPA2 Missense_Mutation p.A31T 0.33 deleterious_low_confidence(0.01) benign(0.084) TCGA-G4-6586-01 14 68108969 68108969 A T ARG2 Missense_Mutation p.N84I 0.42 deleterious(0.03) benign(0.022) TCGA-G4-6586-01 14 69256759 69256759 C A ZFP36L1 Missense_Mutation p.G170W 0.42 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 14 69727167 69727167 C T GALNT16 Missense_Mutation p.R54C 0.43 deleterious(0.05) possibly_damaging(0.642) TCGA-G4-6586-01 14 70713429 70713429 G A ADAM21P1 RNA 0.35 TCGA-G4-6586-01 14 71206708 71206708 A G MAP3K9 Intron 0.45 TCGA-G4-6586-01 14 73425436 73425436 C T DCAF4 Missense_Mutation p.R471W 0.41 deleterious(0) possibly_damaging(0.776) TCGA-G4-6586-01 14 73732148 73732148 C T PAPLN Missense_Mutation p.R1039C 0.36 deleterious(0.02) possibly_damaging(0.88) TCGA-G4-6586-01 14 74404797 74404798 - T FAM161B Frame_Shift_Ins p.N537Efs*5 0.33 TCGA-G4-6586-01 14 75278374 75278374 T - YLPM1 Frame_Shift_Del p.F1761Lfs*40 0.24 TCGA-G4-6586-01 14 75573261 75573261 T C NEK9 Missense_Mutation p.H491R 0.19 deleterious(0) probably_damaging(0.993) TCGA-G4-6586-01 14 76639931 76639931 G A GPATCH2L Missense_Mutation p.R316Q 0.36 tolerated(0.09) probably_damaging(0.976) TCGA-G4-6586-01 14 77751836 77751836 A G POMT2 Missense_Mutation p.V491A 0.35 tolerated(0.48) benign(0.016) TCGA-G4-6586-01 14 78021842 78021842 C T SPTLC2 Missense_Mutation p.R326H 0.41 tolerated(0.29) benign(0.051) TCGA-G4-6586-01 14 93142852 93142852 G - RIN3 Frame_Shift_Del p.V790Cfs*21 0.32 TCGA-G4-6586-01 14 97022205 97022205 T G PAPOLA Silent p.A562A 0.38 TCGA-G4-6586-01 14 99697698 99697698 G A BCL11B Silent p.C208C 0.39 TCGA-G4-6586-01 15 101815493 101815493 C T VIMP Silent p.A95A 0.22 TCGA-G4-6586-01 15 22867480 22867480 A C TUBGCP5 Missense_Mutation p.K852N 0.34 tolerated(0.14) benign(0.007) TCGA-G4-6586-01 15 24920949 24920949 G A NPAP1 5'UTR 0.32 TCGA-G4-6586-01 15 27182399 27182399 G A GABRA5 Silent p.A216A 0.42 TCGA-G4-6586-01 15 27216730 27216730 C T GABRG3 Silent p.H16H 0.39 TCGA-G4-6586-01 15 28267660 28267660 C T OCA2 Silent p.P211P 0.21 TCGA-G4-6586-01 15 33858920 33858920 A C RYR3 Silent p.T396T 0.34 TCGA-G4-6586-01 15 33955784 33955784 G A RYR3 Missense_Mutation p.R1822Q 0.28 probably_damaging(0.946) TCGA-G4-6586-01 15 35163020 35163020 T - AQR Frame_Shift_Del p.K1234Sfs*17 0.27 TCGA-G4-6586-01 15 40754276 40754276 G A BAHD1 Missense_Mutation p.R533H 0.37 deleterious(0) probably_damaging(0.996) TCGA-G4-6586-01 15 41861081 41861081 G T TYRO3 Missense_Mutation p.E371D 0.23 tolerated(0.12) probably_damaging(0.981) TCGA-G4-6586-01 15 42143293 42143293 C T SPTBN5 Missense_Mutation p.R3600Q 0.36 benign(0.003) TCGA-G4-6586-01 15 42644326 42644326 C T GANC Missense_Mutation p.R912C 0.29 benign(0.002) TCGA-G4-6586-01 15 42694005 42694005 C T CAPN3 Silent p.Y507Y 0.33 TCGA-G4-6586-01 15 43818305 43818305 A - MAP1A Frame_Shift_Del p.K1546Rfs*6 0.23 TCGA-G4-6586-01 15 48435038 48435038 A - MYEF2 3'UTR 0.33 TCGA-G4-6586-01 15 53081255 53081255 G A ONECUT1 Missense_Mutation p.T276I 0.46 tolerated(0.07) benign(0.045) TCGA-G4-6586-01 15 55621922 55621922 T - PIGB Frame_Shift_Del p.C177Afs*26 0.32 TCGA-G4-6586-01 15 59175945 59175945 C T SLTM Missense_Mutation p.R959Q 0.34 deleterious(0) probably_damaging(0.995) TCGA-G4-6586-01 15 61521327 61521327 G A RORA Silent p.L31L 0.21 TCGA-G4-6586-01 15 62948195 62948195 C T TLN2 Silent p.N190N 0.33 TCGA-G4-6586-01 15 64422121 64422121 C T SNX1 Missense_Mutation p.R272C 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 15 64592720 64592720 C T CSNK1G1 5'UTR 0.32 TCGA-G4-6586-01 15 65678319 65678319 G - IGDCC4 Frame_Shift_Del p.S1011Afs*59 0.35 TCGA-G4-6586-01 15 65994675 65994675 T - DENND4A Frame_Shift_Del p.M800Cfs*75 0.27 TCGA-G4-6586-01 15 66995566 66995566 C - SMAD6 5'UTR 0.38 TCGA-G4-6586-01 15 67000985 67000986 TT - SMAD6 Intron 0.38 TCGA-G4-6586-01 15 68624762 68624762 C T ITGA11 Missense_Mutation p.V494M 0.34 tolerated(0.06) benign(0.036) TCGA-G4-6586-01 15 72260458 72260458 T G MYO9A Missense_Mutation p.Q618P 0.35 deleterious(0.01) probably_damaging(0.953) TCGA-G4-6586-01 15 73879929 73879929 G A NPTN Silent p.G214G 0.39 TCGA-G4-6586-01 15 74372980 74372980 C T GOLGA6A Missense_Mutation p.G61S 0.12 tolerated(0.09) benign(0.011) TCGA-G4-6586-01 15 74428168 74428168 C A ISLR2 3'UTR 0.39 TCGA-G4-6586-01 15 75112978 75112978 T C LMAN1L Silent p.V259V 0.19 TCGA-G4-6586-01 15 75644492 75644492 C T NEIL1 Missense_Mutation p.R159W 0.28 deleterious(0) benign(0.055) TCGA-G4-6586-01 15 82443983 82443983 A G EFTUD1 Missense_Mutation p.F938L 0.39 tolerated(0.67) benign(0) TCGA-G4-6586-01 15 83674328 83674328 G A C15orf40 Intron 0.21 TCGA-G4-6586-01 15 84581880 84581880 G A ADAMTSL3 Silent p.T579T 0.36 TCGA-G4-6586-01 15 85401606 85401606 C T ALPK3 Missense_Mutation p.R1415C 0.19 tolerated(0.1) benign(0.021) TCGA-G4-6586-01 15 86123890 86123890 G C AKAP13 Missense_Mutation p.S864T 0.27 deleterious_low_confidence(0.01) benign(0.356) TCGA-G4-6586-01 15 86207831 86207831 G A AKAP13 Missense_Mutation p.G1617R 0.33 tolerated(0.1) benign(0.142) TCGA-G4-6586-01 15 86814903 86814903 T C AGBL1 Missense_Mutation p.W635R 0.32 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 15 88727499 88727499 G T NTRK3 Missense_Mutation p.L94I 0.30 tolerated(0.65) benign(0.241) TCGA-G4-6586-01 15 89173301 89173301 G A AEN Missense_Mutation p.G252R 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 15 89876737 89876737 C T POLG Silent p.L83L 0.34 TCGA-G4-6586-01 15 90623096 90623096 C T ZNF710 3'UTR 0.31 TCGA-G4-6586-01 15 92647649 92647649 G A SLCO3A1 Missense_Mutation p.A296T 0.38 tolerated(0.54) benign(0.003) TCGA-G4-6586-01 15 99670576 99670576 G A SYNM Missense_Mutation p.V670M 0.22 tolerated(0.53) benign(0.107) TCGA-G4-6586-01 16 12061625 12061625 C T TNFRSF17 Missense_Mutation p.T159M 0.27 deleterious(0) probably_damaging(0.992) TCGA-G4-6586-01 16 1250551 1250551 G A CACNA1H Missense_Mutation p.A367T 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 16 1399236 1399236 G - BAIAP3 3'UTR 0.30 TCGA-G4-6586-01 16 14306227 14306227 G A MKL2 Silent p.A79A 0.32 TCGA-G4-6586-01 16 16138446 16138446 T G ABCC1 Missense_Mutation p.L317V 0.36 deleterious(0.05) probably_damaging(0.998) TCGA-G4-6586-01 16 1706201 1706201 C T CRAMP1L Silent p.D481D 0.35 TCGA-G4-6586-01 16 19800169 19800169 G A IQCK Silent p.P205P 0.35 TCGA-G4-6586-01 16 20322558 20322558 G T GP2 Missense_Mutation p.A534D 0.35 deleterious(0.01) benign(0.025) TCGA-G4-6586-01 16 20548636 20548636 G A ACSM2B Nonsense_Mutation p.R560* 0.32 TCGA-G4-6586-01 16 20981263 20981263 G A DNAH3 Missense_Mutation p.A2770V 0.35 deleterious(0) probably_damaging(0.996) TCGA-G4-6586-01 16 23706646 23706646 G A ERN2 Missense_Mutation p.R607W 0.36 deleterious(0) possibly_damaging(0.799) TCGA-G4-6586-01 16 27078319 27078319 G T C16orf82 RNA 0.24 TCGA-G4-6586-01 16 27752030 27752030 G T KIAA0556 Missense_Mutation p.R804S 0.25 tolerated(0.72) benign(0.026) TCGA-G4-6586-01 16 27761013 27761013 G - KIAA0556 Frame_Shift_Del p.G912Dfs*85 0.29 TCGA-G4-6586-01 16 2816224 2816224 C T SRRM2 Missense_Mutation p.R1899W 0.27 unknown(0) TCGA-G4-6586-01 16 2817553 2817553 C T SRRM2 Missense_Mutation p.R2342W 0.29 probably_damaging(0.997) TCGA-G4-6586-01 16 2949090 2949090 T C FLYWCH2 Silent p.P121P 0.32 TCGA-G4-6586-01 16 30582446 30582446 T C ZNF688 Splice_Site p.X66_splice 0.18 TCGA-G4-6586-01 16 30727453 30727453 G A SRCAP Missense_Mutation p.E854K 0.35 unknown(0) TCGA-G4-6586-01 16 3073266 3073266 G - HCFC1R1 Frame_Shift_Del p.M84* 0.36 TCGA-G4-6586-01 16 31088068 31088068 A - ZNF646 Frame_Shift_Del p.K142Nfs*77 0.28 TCGA-G4-6586-01 16 31202856 31202856 T - FUS 3'UTR 0.31 TCGA-G4-6586-01 16 3432859 3432859 G A ZSCAN32 Missense_Mutation p.A484V 0.31 tolerated_low_confidence(1) benign(0) TCGA-G4-6586-01 16 3632640 3632640 G A SLX4 Silent p.G1736G 0.35 TCGA-G4-6586-01 16 4498773 4498773 G A DNAJA3 Missense_Mutation p.G389S 0.32 tolerated(1) benign(0.001) TCGA-G4-6586-01 16 4516262 4516262 G A NMRAL1 Missense_Mutation p.R141W 0.34 tolerated(0.23) benign(0.104) TCGA-G4-6586-01 16 4659696 4659696 G - UBALD1 Frame_Shift_Del p.L158Wfs*66 0.40 TCGA-G4-6586-01 16 49430376 49430376 G A C16orf78 Missense_Mutation p.R146Q 0.27 deleterious(0) benign(0.242) TCGA-G4-6586-01 16 49670009 49670009 C T ZNF423 Silent p.T1018T 0.32 TCGA-G4-6586-01 16 50388767 50388767 C T BRD7 Missense_Mutation p.A109T 0.34 tolerated(1) benign(0.002) TCGA-G4-6586-01 16 50745081 50745081 G A NOD2 Missense_Mutation p.R420H 0.43 tolerated(0.15) benign(0.082) TCGA-G4-6586-01 16 56906627 56906627 G A SLC12A3 Missense_Mutation p.G342R 0.29 tolerated(0.1) benign(0.126) TCGA-G4-6586-01 16 57101380 57101380 C A NLRC5 Silent p.L1468L 0.35 TCGA-G4-6586-01 16 57805497 57805497 G A KIFC3 Silent p.R161R 0.40 TCGA-G4-6586-01 16 58608625 58608625 G A CNOT1 Missense_Mutation p.R623W 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 16 632904 632904 C T PIGQ Missense_Mutation p.P518L 0.44 tolerated_low_confidence(0.1) benign(0.027) TCGA-G4-6586-01 16 67573991 67573991 G A FAM65A Silent p.R170R 0.39 TCGA-G4-6586-01 16 67679155 67679155 C A RLTPR Silent p.A2A 0.29 TCGA-G4-6586-01 16 67682131 67682131 C - RLTPR Frame_Shift_Del p.P418Rfs*94 0.27 TCGA-G4-6586-01 16 68835781 68835781 C - CDH1 Frame_Shift_Del p.P126Rfs*89 0.27 TCGA-G4-6586-01 16 70497568 70497568 C T FUK Missense_Mutation p.T42M 0.41 tolerated(0.07) benign(0.327) TCGA-G4-6586-01 16 705118 705118 C A WDR90 Silent p.A509A 0.11 TCGA-G4-6586-01 16 70928446 70928446 C A HYDIN Nonsense_Mutation p.E3052* 0.23 TCGA-G4-6586-01 16 70977721 70977721 C A HYDIN Silent p.R2221R 0.23 TCGA-G4-6586-01 16 72048500 72048500 T C DHODH Silent p.T121T 0.41 TCGA-G4-6586-01 16 737726 737726 G A WDR24 Silent p.S165S 0.28 TCGA-G4-6586-01 16 7759108 7759108 C - RBFOX1 Frame_Shift_Del p.T372Pfs*7 0.27 TCGA-G4-6586-01 16 77775751 77775751 A C NUDT7 Missense_Mutation p.K207N 0.36 tolerated(0.05) benign(0.046) TCGA-G4-6586-01 16 78011625 78011625 G A VAT1L 3'UTR 0.34 TCGA-G4-6586-01 16 81164209 81164209 G A PKD1L2 RNA 0.52 TCGA-G4-6586-01 16 81968118 81968118 A - PLCG2 Frame_Shift_Del p.T943Pfs*5 0.18 TCGA-G4-6586-01 16 83378555 83378555 G T CDH13 Missense_Mutation p.R289L 0.23 deleterious(0.02) possibly_damaging(0.682) TCGA-G4-6586-01 16 85741442 85741442 T C C16orf74 3'UTR 0.21 TCGA-G4-6586-01 16 87367571 87367571 A G FBXO31 Missense_Mutation p.C440R 0.47 tolerated_low_confidence(0.59) benign(0) TCGA-G4-6586-01 16 88495067 88495067 C - ZNF469 Frame_Shift_Del p.P398Lfs*104 0.48 TCGA-G4-6586-01 16 88497832 88497832 C - ZNF469 Frame_Shift_Del p.P1292Lfs*235 0.36 TCGA-G4-6586-01 16 88498216 88498216 G A ZNF469 Silent p.S1418S 0.22 TCGA-G4-6586-01 16 88876157 88876157 G A APRT Silent p.G164G 0.25 TCGA-G4-6586-01 16 89043229 89043229 C A CBFA2T3 5'UTR 0.25 TCGA-G4-6586-01 16 89287489 89287489 T C ZNF778 5'UTR 0.52 TCGA-G4-6586-01 16 89350091 89350091 G A ANKRD11 Silent p.D953D 0.47 TCGA-G4-6586-01 16 89614413 89614413 G A SPG7 Missense_Mutation p.A519T 0.50 deleterious(0) probably_damaging(0.927) TCGA-G4-6586-01 16 9857539 9857539 G A GRIN2A Missense_Mutation p.R1288C 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 17 10409183 10409183 C T MYH1 Missense_Mutation p.R707H 0.36 deleterious(0) possibly_damaging(0.869) TCGA-G4-6586-01 17 10537420 10537420 C T MYH3 Missense_Mutation p.S1479N 0.14 tolerated(0.06) benign(0.002) TCGA-G4-6586-01 17 10538708 10538708 C T MYH3 Missense_Mutation p.R1383H 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-G4-6586-01 17 11772522 11772522 G A DNAH9 Silent p.Q3335Q 0.35 TCGA-G4-6586-01 17 1303477 1303477 G A YWHAE 5'UTR 0.38 TCGA-G4-6586-01 17 13399822 13399822 G A HS3ST3A1 Missense_Mutation p.R305C 0.19 deleterious(0) benign(0.039) TCGA-G4-6586-01 17 1372854 1372854 G A MYO1C Missense_Mutation p.R861W 0.34 deleterious(0.01) benign(0.01) TCGA-G4-6586-01 17 1538794 1538794 C T SCARF1 Missense_Mutation p.R584Q 0.20 tolerated(0.06) possibly_damaging(0.611) TCGA-G4-6586-01 17 15441243 15441243 T C TVP23C Intron 0.14 TCGA-G4-6586-01 17 1678356 1678356 G A SERPINF1 Silent p.Q216Q 0.29 TCGA-G4-6586-01 17 18022310 18022310 G A MYO15A Missense_Mutation p.G66S 0.35 probably_damaging(0.996) TCGA-G4-6586-01 17 18024983 18024983 C - MYO15A Frame_Shift_Del p.P958Lfs*28 0.29 TCGA-G4-6586-01 17 18051428 18051428 G A MYO15A Missense_Mutation p.G2199S 0.42 unknown(0) TCGA-G4-6586-01 17 1943110 1943110 G A DPH1 Missense_Mutation p.A253T 0.25 deleterious(0.04) benign(0.117) TCGA-G4-6586-01 17 19437387 19437387 G A SLC47A1 Silent p.A45A 0.34 TCGA-G4-6586-01 17 2585294 2585294 C T PAFAH1B1 3'UTR 0.35 TCGA-G4-6586-01 17 25915545 25915545 C T KSR1 Silent p.L207L 0.22 TCGA-G4-6586-01 17 26727647 26727647 A T SLC46A1 Missense_Mutation p.L434H 0.31 deleterious(0) possibly_damaging(0.695) TCGA-G4-6586-01 17 26944208 26944208 A - KIAA0100 Intron 0.25 TCGA-G4-6586-01 17 27207615 27207615 T C FLOT2 Missense_Mutation p.I417M 0.29 tolerated(0.06) benign(0.007) TCGA-G4-6586-01 17 27239891 27239891 T C PHF12 Silent p.P566P 0.09 TCGA-G4-6586-01 17 27591498 27591499 - C NUFIP2 3'UTR 0.13 TCGA-G4-6586-01 17 27905379 27905379 C T GIT1 Missense_Mutation p.R283Q 0.30 deleterious(0.02) possibly_damaging(0.772) TCGA-G4-6586-01 17 27943778 27943778 G A CORO6 Missense_Mutation p.R316W 0.28 deleterious(0) probably_damaging(0.995) TCGA-G4-6586-01 17 27946684 27946684 G A CORO6 Silent p.D102D 0.33 TCGA-G4-6586-01 17 29130941 29130941 A G CRLF3 Silent p.T105T 0.35 TCGA-G4-6586-01 17 29852189 29852189 C T RAB11FIP4 Silent p.R405R 0.31 TCGA-G4-6586-01 17 33591628 33591628 C - SLFN5 Frame_Shift_Del p.Q524Sfs*11 0.48 TCGA-G4-6586-01 17 33875659 33875659 G A SLFN14 Missense_Mutation p.P780S 0.12 tolerated(0.17) possibly_damaging(0.804) TCGA-G4-6586-01 17 3494358 3494358 G A SHPK Silent p.D168D 0.33 TCGA-G4-6586-01 17 34964923 34964923 C T MRM1 3'UTR 0.53 TCGA-G4-6586-01 17 3583076 3583076 C T P2RX5 Missense_Mutation p.G356D 0.25 tolerated(0.77) benign(0.018) TCGA-G4-6586-01 17 3593771 3593772 - C P2RX5 Frame_Shift_Ins p.T162Hfs*3 0.28 TCGA-G4-6586-01 17 37321968 37321968 C T ARL5C Missense_Mutation p.E16K 0.11 deleterious(0.01) benign(0.097) TCGA-G4-6586-01 17 37676270 37676270 T C CDK12 Missense_Mutation p.C1009R 0.66 probably_damaging(0.999) TCGA-G4-6586-01 17 37884269 37884269 A C ERBB2 Missense_Mutation p.E1247A 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 17 38245734 38245734 C T THRA Intron 0.62 TCGA-G4-6586-01 17 38813697 38813697 T - KRT222 Frame_Shift_Del p.K189Sfs*7 0.25 TCGA-G4-6586-01 17 39155953 39155953 A G KRTAP3-2 Silent p.C51C 0.37 TCGA-G4-6586-01 17 39273810 39273810 C T KRTAP4-11 3'UTR 0.66 TCGA-G4-6586-01 17 39280025 39280025 C T KRTAP4-12 Missense_Mutation p.R117H 0.52 deleterious(0.03) unknown(0) TCGA-G4-6586-01 17 40344925 40344925 T C GHDC Missense_Mutation p.Q129R 0.34 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 17 40622131 40622131 T C ATP6V0A1 Silent p.N106N 0.65 TCGA-G4-6586-01 17 40766939 40766939 C T TUBG1 Silent p.D412D 0.62 TCGA-G4-6586-01 17 42248326 42248326 C T ASB16 Nonsense_Mutation p.R57* 0.42 TCGA-G4-6586-01 17 42288668 42288668 C T UBTF Missense_Mutation p.R360H 0.72 tolerated(0.08) probably_damaging(0.985) TCGA-G4-6586-01 17 42437357 42437357 G A FAM171A2 Missense_Mutation p.R88C 0.77 deleterious(0.03) possibly_damaging(0.877) TCGA-G4-6586-01 17 42478367 42478368 - T GPATCH8 Frame_Shift_Ins p.E360Rfs*3 0.29 TCGA-G4-6586-01 17 45297393 45297393 G A MYL4 Missense_Mutation p.R96H 0.72 deleterious(0.04) benign(0.003) TCGA-G4-6586-01 17 46628219 46628219 C - HOXB3 Frame_Shift_Del p.G258Afs*19 0.09 TCGA-G4-6586-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.43 TCGA-G4-6586-01 17 4871908 4871908 G C CAMTA2 3'UTR 0.20 TCGA-G4-6586-01 17 4875738 4875738 G - CAMTA2 Frame_Shift_Del p.P889Lfs*9 0.29 TCGA-G4-6586-01 17 54671701 54671701 C T NOG Silent p.D39D 0.42 TCGA-G4-6586-01 17 56399748 56399748 C T BZRAP1 Missense_Mutation p.R448Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-G4-6586-01 17 56437575 56437575 C T RNF43 Missense_Mutation p.R296H 0.76 deleterious(0) possibly_damaging(0.896) TCGA-G4-6586-01 17 60765652 60765652 T - MRC2 Frame_Shift_Del p.Q985Rfs*11 0.49 TCGA-G4-6586-01 17 61902042 61902042 C T FTSJ3 Missense_Mutation p.R291Q 0.31 tolerated(0.21) benign(0.015) TCGA-G4-6586-01 17 62228202 62228202 T C TEX2 Missense_Mutation p.Q1094R 0.60 deleterious(0) benign(0.401) TCGA-G4-6586-01 17 649125 649125 A G GEMIN4 Missense_Mutation p.C720R 0.25 tolerated(0.37) benign(0.006) TCGA-G4-6586-01 17 65907729 65907729 C T BPTF Silent p.D1243D 0.31 TCGA-G4-6586-01 17 66416444 66416444 C T ARSG Missense_Mutation p.A473V 0.75 tolerated(0.17) benign(0.003) TCGA-G4-6586-01 17 66511520 66511521 - T PRKAR1A Intron 0.65 TCGA-G4-6586-01 17 66972038 66972038 T C ABCA9 3'UTR 0.21 TCGA-G4-6586-01 17 7123997 7123997 T C ACADVL Splice_Site p.X116_splice 0.16 TCGA-G4-6586-01 17 71282063 71282063 C T CDC42EP4 Missense_Mutation p.V193M 0.76 tolerated(0.38) benign(0.045) TCGA-G4-6586-01 17 7132917 7132917 C T DVL2 Missense_Mutation p.R246H 0.36 tolerated(0.08) possibly_damaging(0.893) TCGA-G4-6586-01 17 7139085 7139085 G T PHF23 Missense_Mutation p.L358M 0.38 tolerated(0.14) possibly_damaging(0.624) TCGA-G4-6586-01 17 72246431 72246431 C T TTYH2 Silent p.L351L 0.37 TCGA-G4-6586-01 17 72349059 72349059 C T KIF19 Nonsense_Mutation p.Q694* 0.80 TCGA-G4-6586-01 17 72916061 72916061 G A USH1G Silent p.A290A 0.76 TCGA-G4-6586-01 17 7329077 7329077 G A C17orf74 Missense_Mutation p.E24K 0.31 deleterious(0.04) benign(0) TCGA-G4-6586-01 17 73497690 73497690 C T CASKIN2 Missense_Mutation p.R1126H 0.72 tolerated(0.43) probably_damaging(0.988) TCGA-G4-6586-01 17 7350435 7350435 C - CHRNB1 Frame_Shift_Del p.P144Rfs*74 0.30 TCGA-G4-6586-01 17 74569440 74569440 C T ST6GALNAC2 Missense_Mutation p.A123T 0.77 benign(0.021) TCGA-G4-6586-01 17 74740546 74740546 C T MFSD11 Silent p.N213N 0.73 TCGA-G4-6586-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.12 TCGA-G4-6586-01 17 76113680 76113680 G T TMC6 Silent p.T689T 0.33 TCGA-G4-6586-01 17 7612768 7612768 T C EFNB3 Silent p.G299G 0.41 TCGA-G4-6586-01 17 7734474 7734474 T G DNAH2 Missense_Mutation p.L4101V 0.32 benign(0.142) TCGA-G4-6586-01 17 7909952 7909952 G A GUCY2D Missense_Mutation p.R433Q 0.35 deleterious(0.04) benign(0.043) TCGA-G4-6586-01 17 79985613 79985613 C T LRRC45 Silent p.N299N 0.75 TCGA-G4-6586-01 17 80115636 80115636 G T CCDC57 Silent p.A743A 0.20 TCGA-G4-6586-01 17 80194683 80194683 G A SLC16A3 Missense_Mutation p.G101D 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 17 8381674 8381674 C T MYH10 Silent p.A1896A 0.38 TCGA-G4-6586-01 17 8647479 8647479 G A CCDC42 Missense_Mutation p.A36V 0.35 tolerated(0.06) benign(0.02) TCGA-G4-6586-01 17 913999 913999 G T ABR Silent p.R736R 0.32 TCGA-G4-6586-01 17 970419 970419 G A ABR Silent p.P360P 0.22 TCGA-G4-6586-01 18 12720544 12720544 A - PSMG2 Frame_Shift_Del p.S150Vfs*6 0.27 TCGA-G4-6586-01 18 21723116 21723116 G A CABYR Missense_Mutation p.G13D 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 18 2595455 2595455 A G NDC80 Silent p.L352L 0.29 TCGA-G4-6586-01 18 2601452 2601452 A - NDC80 Frame_Shift_Del p.M480Wfs*7 0.25 TCGA-G4-6586-01 18 2703799 2703799 C T SMCHD1 Missense_Mutation p.P586L 0.29 tolerated(0.13) benign(0.046) TCGA-G4-6586-01 18 2891687 2891687 C A EMILIN2 Missense_Mutation p.A521E 0.43 tolerated(1) benign(0.016) TCGA-G4-6586-01 18 2960695 2960695 A - LPIN2 Frame_Shift_Del p.H49Tfs*10 0.28 TCGA-G4-6586-01 18 3067291 3067291 T G MYOM1 Missense_Mutation p.E1676A 0.20 tolerated_low_confidence(0.07) benign(0.003) TCGA-G4-6586-01 18 39617680 39617680 T - PIK3C3 Frame_Shift_Del p.F623Lfs*43 0.25 TCGA-G4-6586-01 18 44035972 44035972 G - RNF165 Frame_Shift_Del p.E286Rfs*22 0.32 TCGA-G4-6586-01 18 45566519 45566519 C - ZBTB7C Frame_Shift_Del p.P321Lfs*18 0.33 TCGA-G4-6586-01 18 48465973 48465973 G A ME2 Missense_Mutation p.R484Q 0.34 tolerated(0.14) possibly_damaging(0.534) TCGA-G4-6586-01 18 48511091 48511091 C T ELAC1 Intron 0.29 TCGA-G4-6586-01 18 51013194 51013194 C T DCC Missense_Mutation p.T1255M 0.36 deleterious(0.01) probably_damaging(0.909) TCGA-G4-6586-01 18 5197103 5197103 C T C18orf42 5'UTR 0.44 TCGA-G4-6586-01 18 52895520 52895520 G - TCF4 Frame_Shift_Del p.P753Lfs*32 0.32 TCGA-G4-6586-01 18 56018258 56018258 A G NEDD4L Silent p.R563R 0.49 TCGA-G4-6586-01 18 67816161 67816161 C T RTTN Missense_Mutation p.R762Q 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 18 67866666 67866666 G T RTTN Missense_Mutation p.L188I 0.11 tolerated(0.06) probably_damaging(0.998) TCGA-G4-6586-01 18 67994220 67994220 A - SOCS6 3'UTR 0.28 TCGA-G4-6586-01 18 72183487 72183487 C T CNDP2 Missense_Mutation p.R310W 0.40 deleterious(0) possibly_damaging(0.859) TCGA-G4-6586-01 18 724268 724268 A - YES1 3'UTR 0.26 TCGA-G4-6586-01 18 74092114 74092114 T C ZNF516 Missense_Mutation p.I652M 0.36 tolerated(0.22) benign(0.002) TCGA-G4-6586-01 18 74672717 74672717 G - ZNF236 Frame_Shift_Del p.E1775Sfs*19 0.20 TCGA-G4-6586-01 18 77659073 77659073 G A KCNG2 Missense_Mutation p.V220M 0.37 tolerated(0.06) probably_damaging(0.979) TCGA-G4-6586-01 18 77918073 77918073 C T PARD6G Missense_Mutation p.A238T 0.36 deleterious(0) probably_damaging(0.995) TCGA-G4-6586-01 18 9255449 9255449 A G ANKRD12 Silent p.K728K 0.35 TCGA-G4-6586-01 19 10116757 10116757 A C COL5A3 Missense_Mutation p.L80R 0.41 unknown(0) TCGA-G4-6586-01 19 10433397 10433397 G - RAVER1 Frame_Shift_Del p.P383Qfs*141 0.29 TCGA-G4-6586-01 19 1047283 1047283 C A ABCA7 Missense_Mutation p.A658D 0.23 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 19 10662941 10662941 G A ATG4D Missense_Mutation p.V395M 0.38 deleterious(0) possibly_damaging(0.78) TCGA-G4-6586-01 19 1079993 1079993 C T HMHA1 Silent p.L543L 0.28 TCGA-G4-6586-01 19 11660520 11660520 C T CNN1 Silent p.Y268Y 0.34 TCGA-G4-6586-01 19 12015597 12015597 T - ZNF69 Frame_Shift_Del p.F115Lfs*8 0.27 TCGA-G4-6586-01 19 1219344 1219344 C T STK11 Silent p.C132C 0.28 TCGA-G4-6586-01 19 12305950 12305950 C T CTD-2666L21.1 RNA 0.57 TCGA-G4-6586-01 19 12384448 12384448 A - ZNF44 Frame_Shift_Del p.W256Gfs*34 0.32 TCGA-G4-6586-01 19 12774622 12774622 G A MAN2B1 Missense_Mutation p.R220C 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-G4-6586-01 19 12812581 12812581 C T TNPO2 Silent p.P832P 0.37 TCGA-G4-6586-01 19 12876644 12876644 A T HOOK2 Missense_Mutation p.I535N 0.29 tolerated(0.5) benign(0.16) TCGA-G4-6586-01 19 12985433 12985433 C T MAST1 Missense_Mutation p.R1488C 0.50 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-G4-6586-01 19 13409459 13409459 G - CACNA1A Frame_Shift_Del p.D997Tfs*72 0.25 TCGA-G4-6586-01 19 13446675 13446675 G - CACNA1A Frame_Shift_Del p.L343Sfs*10 0.29 TCGA-G4-6586-01 19 14028901 14028901 C A CC2D1A Missense_Mutation p.P256H 0.31 deleterious(0.01) possibly_damaging(0.572) TCGA-G4-6586-01 19 14031456 14031456 G A CC2D1A Silent p.A481A 0.38 TCGA-G4-6586-01 19 14046542 14046542 C T PODNL1 Silent p.P169P 0.31 TCGA-G4-6586-01 19 14049119 14049119 C - PODNL1 5'UTR 0.16 TCGA-G4-6586-01 19 1434882 1434882 G A DAZAP1 Missense_Mutation p.V399M 0.38 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-G4-6586-01 19 1438501 1438501 C G RPS15 Intron 0.31 TCGA-G4-6586-01 19 15795950 15795950 G A CYP4F12 Missense_Mutation p.R353H 0.34 tolerated(0.08) benign(0.032) TCGA-G4-6586-01 19 15989681 15989681 C T CYP4F2 Missense_Mutation p.R488H 0.28 tolerated(0.06) benign(0.178) TCGA-G4-6586-01 19 1625595 1625595 C A TCF3 Missense_Mutation p.R160I 0.38 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 19 16625433 16625433 G A C19orf44 Missense_Mutation p.A621T 0.21 tolerated(0.5) benign(0.001) TCGA-G4-6586-01 19 16631536 16631537 TG - C19orf44 3'UTR 0.42 TCGA-G4-6586-01 19 16641462 16641462 G A CHERP Silent p.N270N 0.29 TCGA-G4-6586-01 19 16976226 16976226 C T SIN3B Silent p.D495D 0.29 TCGA-G4-6586-01 19 17013575 17013575 G - CPAMD8 Frame_Shift_Del p.M1571Cfs*32 0.34 TCGA-G4-6586-01 19 17104274 17104274 C T CPAMD8 Silent p.G453G 0.28 TCGA-G4-6586-01 19 17394982 17394982 C T ANKLE1 Missense_Mutation p.A428V 0.26 tolerated(0.36) benign(0.001) TCGA-G4-6586-01 19 17449878 17449878 G A GTPBP3 Missense_Mutation p.S236N 0.36 tolerated_low_confidence(0.36) benign(0.002) TCGA-G4-6586-01 19 17836781 17836781 C - MAP1S Frame_Shift_Del p.P198Rfs*93 0.39 TCGA-G4-6586-01 19 17955186 17955186 C T JAK3 Missense_Mutation p.R14H 0.36 deleterious(0.01) possibly_damaging(0.835) TCGA-G4-6586-01 19 19656427 19656427 G A CILP2 Missense_Mutation p.G1025R 0.33 tolerated(0.1) benign(0.009) TCGA-G4-6586-01 19 19737848 19737848 G A LPAR2 Silent p.G82G 0.26 TCGA-G4-6586-01 19 19740862 19740862 G A GMIP Silent p.A941A 0.30 TCGA-G4-6586-01 19 19758527 19758527 G A ATP13A1 Missense_Mutation p.R892W 0.33 deleterious(0.01) possibly_damaging(0.676) TCGA-G4-6586-01 19 2078262 2078262 G A MOB3A Missense_Mutation p.R100C 0.32 tolerated(0.16) probably_damaging(0.993) TCGA-G4-6586-01 19 21561487 21561487 T C ZNF738 3'UTR 0.41 TCGA-G4-6586-01 19 2981556 2981556 C T TLE6 Missense_Mutation p.A52V 0.32 deleterious(0.01) benign(0.023) TCGA-G4-6586-01 19 30164902 30164902 G A PLEKHF1 Silent p.P52P 0.35 TCGA-G4-6586-01 19 3179235 3179235 C T S1PR4 Missense_Mutation p.R149W 0.10 deleterious(0) probably_damaging(0.912) TCGA-G4-6586-01 19 33078302 33078302 A - PDCD5 3'UTR 0.26 TCGA-G4-6586-01 19 34856216 34856216 A G GPI Silent p.Q54Q 0.28 TCGA-G4-6586-01 19 35719351 35719351 C T FAM187B Missense_Mutation p.G78D 0.09 deleterious(0.01) probably_damaging(0.917) TCGA-G4-6586-01 19 35850380 35850380 G A FFAR3 Silent p.P196P 0.20 TCGA-G4-6586-01 19 36035896 36035896 A G GAPDHS Missense_Mutation p.K381R 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6586-01 19 36110637 36110637 G A HAUS5 Silent p.T461T 0.28 TCGA-G4-6586-01 19 36223002 36223002 G - KMT2B Frame_Shift_Del p.G1879Vfs*16 0.38 TCGA-G4-6586-01 19 36297615 36297615 C T PRODH2 Missense_Mutation p.G342R 0.33 tolerated(0.11) benign(0.188) TCGA-G4-6586-01 19 36369975 36369975 G T APLP1 Splice_Site p.X572_splice 0.26 TCGA-G4-6586-01 19 36673953 36673953 T C ZNF565 Silent p.R305R 0.37 TCGA-G4-6586-01 19 3760150 3760150 T C APBA3 Missense_Mutation p.D38G 0.32 deleterious_low_confidence(0.04) benign(0.342) TCGA-G4-6586-01 19 38573615 38573615 C T SIPA1L3 Silent p.N470N 0.32 TCGA-G4-6586-01 19 39071143 39071143 C T RYR1 Missense_Mutation p.T4882M 0.28 possibly_damaging(0.488) TCGA-G4-6586-01 19 39215150 39215150 G A ACTN4 Missense_Mutation p.R652H 0.33 deleterious(0.02) benign(0.318) TCGA-G4-6586-01 19 3964906 3964906 A G DAPK3 Missense_Mutation p.L49P 0.32 tolerated(0.21) possibly_damaging(0.612) TCGA-G4-6586-01 19 39871257 39871257 A G SAMD4B Missense_Mutation p.I560M 0.30 deleterious(0.02) benign(0.257) TCGA-G4-6586-01 19 40318018 40318018 G A DYRK1B Silent p.A334A 0.43 TCGA-G4-6586-01 19 40322448 40322448 C T DYRK1B Silent p.T20T 0.48 TCGA-G4-6586-01 19 40363189 40363189 G A FCGBP Missense_Mutation p.R4961W 0.34 probably_damaging(0.997) TCGA-G4-6586-01 19 40421229 40421229 C T FCGBP Missense_Mutation p.A898T 0.40 benign(0.252) TCGA-G4-6586-01 19 4047674 4047674 G - ZBTB7A 3'UTR 0.31 TCGA-G4-6586-01 19 408367 408367 C A C2CD4C 5'UTR 0.32 TCGA-G4-6586-01 19 41118977 41118977 A G LTBP4 Missense_Mutation p.D836G 0.30 deleterious(0.01) probably_damaging(0.96) TCGA-G4-6586-01 19 41265481 41265481 C - SNRPA Frame_Shift_Del p.V133Wfs*15 0.31 TCGA-G4-6586-01 19 41282872 41282872 A G MIA Splice_Site p.X88_splice 0.35 TCGA-G4-6586-01 19 41930437 41930437 G A BCKDHA Missense_Mutation p.R421H 0.11 tolerated(0.07) benign(0.003) TCGA-G4-6586-01 19 42259422 42259422 T C CEACAM6 5'UTR 0.27 TCGA-G4-6586-01 19 42584552 42584552 C T ZNF574 Silent p.R598R 0.34 TCGA-G4-6586-01 19 42794805 42794805 C T CIC Nonsense_Mutation p.Q629* 0.35 TCGA-G4-6586-01 19 43237137 43237137 C T PSG3 Missense_Mutation p.D170N 0.11 deleterious(0.04) benign(0.077) TCGA-G4-6586-01 19 43523141 43523141 T C PSG11 Missense_Mutation p.T164A 0.10 tolerated(0.9) benign(0.02) TCGA-G4-6586-01 19 43523160 43523160 G A PSG11 Silent p.N157N 0.10 TCGA-G4-6586-01 19 44844613 44844613 A G ZNF112 Missense_Mutation p.Y33H 0.29 deleterious(0.01) probably_damaging(1) TCGA-G4-6586-01 19 44891030 44891030 A G ZNF285 Silent p.N459N 0.33 TCGA-G4-6586-01 19 45898730 45898730 G - PPP1R13L Frame_Shift_Del p.Q440Sfs*10 0.42 TCGA-G4-6586-01 19 45997637 45997637 C T RTN2 Missense_Mutation p.E201K 0.42 tolerated_low_confidence(0.16) benign(0.013) TCGA-G4-6586-01 19 46002589 46002589 G A PPM1N Missense_Mutation p.G287R 0.42 tolerated(0.31) benign(0.011) TCGA-G4-6586-01 19 46269970 46269970 G A SIX5 Missense_Mutation p.A416V 0.45 tolerated(0.46) benign(0.003) TCGA-G4-6586-01 19 47192868 47192868 C - PRKD2 Frame_Shift_Del p.D633Tfs*5 0.29 TCGA-G4-6586-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.29 TCGA-G4-6586-01 19 48049094 48049094 G - ZNF541 Frame_Shift_Del p.P231Rfs*49 0.33 TCGA-G4-6586-01 19 4817969 4817969 G A TICAM1 Nonsense_Mutation p.R141* 0.26 TCGA-G4-6586-01 19 48495323 48495323 G T BSPH1 Missense_Mutation p.L6I 0.25 deleterious_low_confidence(0) benign(0.009) TCGA-G4-6586-01 19 48537535 48537535 G - CABP5 Frame_Shift_Del p.R145Gfs*24 0.26 TCGA-G4-6586-01 19 48790269 48790269 A - ZNF114 3'UTR 0.48 TCGA-G4-6586-01 19 48848518 48848518 G A TMEM143 Missense_Mutation p.R155W 0.36 deleterious(0.01) possibly_damaging(0.689) TCGA-G4-6586-01 19 48988938 48988938 G A LMTK3 3'UTR 0.22 TCGA-G4-6586-01 19 49253700 49253700 G A FUT1 Missense_Mutation p.T280M 0.34 deleterious(0.05) benign(0.005) TCGA-G4-6586-01 19 49657211 49657211 C T HRC Silent p.E428E 0.37 TCGA-G4-6586-01 19 50158042 50158042 C - SCAF1 Frame_Shift_Del p.T1181Pfs*28 0.38 TCGA-G4-6586-01 19 50881609 50881609 G A NR1H2 Missense_Mutation p.G129R 0.36 tolerated(0.09) possibly_damaging(0.832) TCGA-G4-6586-01 19 51509732 51509732 C - KLK9 Frame_Shift_Del p.A150Pfs*121 0.22 TCGA-G4-6586-01 19 51870355 51870355 A - CLDND2 3'UTR 0.30 TCGA-G4-6586-01 19 52217022 52217022 C T HAS1 Silent p.A465A 0.33 TCGA-G4-6586-01 19 52497256 52497256 C T ZNF615 Missense_Mutation p.R369H 0.28 tolerated(0.24) probably_damaging(0.912) TCGA-G4-6586-01 19 52888438 52888438 A - ZNF880 Frame_Shift_Del p.K537Nfs*60 0.31 TCGA-G4-6586-01 19 52909865 52909865 C T ZNF528 Silent p.D80D 0.35 TCGA-G4-6586-01 19 53117217 53117217 C T ZNF83 Missense_Mutation p.G201R 0.35 deleterious(0.02) probably_damaging(1) TCGA-G4-6586-01 19 53669511 53669511 G A ZNF665 Missense_Mutation p.L78F 0.36 tolerated(0.06) benign(0.195) TCGA-G4-6586-01 19 53885354 53885354 T C ZNF525 3'UTR 0.22 TCGA-G4-6586-01 19 54378829 54378829 C T MYADM 3'UTR 0.31 TCGA-G4-6586-01 19 54610150 54610150 G A NDUFA3 Missense_Mutation p.V66M 0.33 tolerated(0.09) benign(0.299) TCGA-G4-6586-01 19 54724666 54724666 C T LILRB3 Silent p.Q330Q 0.16 TCGA-G4-6586-01 19 54742726 54742726 C - LILRA6 3'UTR 0.37 TCGA-G4-6586-01 19 54782965 54782965 T G LILRB2 Splice_Site p.X220_splice 0.07 TCGA-G4-6586-01 19 55604405 55604405 A T PPP1R12C Missense_Mutation p.S602T 0.29 tolerated(0.1) benign(0.009) TCGA-G4-6586-01 19 55690401 55690401 C T SYT5 Silent p.P3P 0.31 TCGA-G4-6586-01 19 55874481 55874481 C T FAM71E2 5'UTR 0.43 TCGA-G4-6586-01 19 55879916 55879916 C T IL11 Missense_Mutation p.G68R 0.34 deleterious(0.03) probably_damaging(0.971) TCGA-G4-6586-01 19 56423554 56423554 A - NLRP13 Frame_Shift_Del p.F543Lfs*8 0.33 TCGA-G4-6586-01 19 56466869 56466869 C T NLRP8 Missense_Mutation p.T482M 0.38 tolerated(0.24) benign(0.015) TCGA-G4-6586-01 19 57133361 57133361 C A ZNF71 Missense_Mutation p.H236N 0.33 deleterious(0) probably_damaging(0.99) TCGA-G4-6586-01 19 57888989 57888989 T C ZNF547 Silent p.N215N 0.26 TCGA-G4-6586-01 19 58117911 58117911 C T ZNF530 Missense_Mutation p.R340C 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-G4-6586-01 19 58571474 58571474 G A ZNF135 Intron 0.57 TCGA-G4-6586-01 19 59065796 59065796 T A CHMP2A 5'UTR 0.33 TCGA-G4-6586-01 19 59068267 59068267 T C UBE2M Missense_Mutation p.S79G 0.27 deleterious(0.01) possibly_damaging(0.643) TCGA-G4-6586-01 19 613381 613381 G A HCN2 Missense_Mutation p.R573H 0.43 deleterious(0) possibly_damaging(0.798) TCGA-G4-6586-01 19 621107 621107 G A POLRMT Missense_Mutation p.A864V 0.32 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 19 625178 625178 G A POLRMT Missense_Mutation p.A300V 0.25 deleterious(0) possibly_damaging(0.509) TCGA-G4-6586-01 19 7076442 7076442 G T ZNF557 Missense_Mutation p.W57C 0.31 deleterious(0) probably_damaging(0.95) TCGA-G4-6586-01 19 7681493 7681494 AG - CAMSAP3 Frame_Shift_Del p.R1094Afs*84 0.46 TCGA-G4-6586-01 19 8656922 8656922 C - ADAMTS10 Frame_Shift_Del p.P552Rfs*85 0.59 TCGA-G4-6586-01 19 8662193 8662193 T C ADAMTS10 Silent p.K273K 0.21 TCGA-G4-6586-01 19 868128 868128 G A MED16 Silent p.D869D 0.26 TCGA-G4-6586-01 19 890996 890996 C T MED16 Missense_Mutation p.A46T 0.22 deleterious(0) possibly_damaging(0.499) TCGA-G4-6586-01 19 9073982 9073982 A G MUC16 Silent p.S4488S 0.32 TCGA-G4-6586-01 19 9076071 9076071 A T MUC16 Missense_Mutation p.M3792K 0.30 unknown(0) TCGA-G4-6586-01 1 100154788 100154788 G A PALMD Silent p.P324P 0.30 TCGA-G4-6586-01 1 102462526 102462526 G A OLFM3 5'UTR 0.32 TCGA-G4-6586-01 1 10438496 10438496 A G KIF1B 3'Flank 0.26 TCGA-G4-6586-01 1 10708111 10708111 T C CASZ1 Missense_Mutation p.M1082V 0.22 tolerated(0.3) benign(0.001) TCGA-G4-6586-01 1 109777887 109777887 T C SARS Missense_Mutation p.L268P 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 1 11015104 11015104 A G C1orf127 Silent p.T306T 0.28 TCGA-G4-6586-01 1 11082749 11082749 A G TARDBP 3'UTR 0.39 TCGA-G4-6586-01 1 11292544 11292544 A - MTOR Frame_Shift_Del p.F821Lfs*34 0.23 TCGA-G4-6586-01 1 113241090 113241090 A G MOV10 Missense_Mutation p.Y833C 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 1 1139814 1139814 G A TNFRSF18 Silent p.S121S 0.26 TCGA-G4-6586-01 1 11591068 11591068 T C PTCHD2 Silent p.G1069G 0.34 TCGA-G4-6586-01 1 116383112 116383112 T - NHLH2 5'UTR 0.30 TCGA-G4-6586-01 1 116574258 116574258 C A SLC22A15 Intron 0.46 TCGA-G4-6586-01 1 116666949 116666949 A - MAB21L3 Frame_Shift_Del p.N152Mfs*15 0.14 TCGA-G4-6586-01 1 12009947 12009947 A G PLOD1 Missense_Mutation p.I96V 0.32 tolerated(0.68) benign(0.002) TCGA-G4-6586-01 1 120906332 120906332 C T RP11-439A17.4 5'Flank 0.43 TCGA-G4-6586-01 1 12855952 12855952 C T PRAMEF1 Missense_Mutation p.T411M 0.26 tolerated(0.11) benign(0.009) TCGA-G4-6586-01 1 1310140 1310140 C A AURKAIP1 5'UTR 0.41 TCGA-G4-6586-01 1 145291416 145291416 C G NBPF10 5'Flank 0.18 TCGA-G4-6586-01 1 145594051 145594051 C T POLR3C Missense_Mutation p.R504H 0.34 tolerated(0.29) benign(0) TCGA-G4-6586-01 1 147096006 147096006 C A BCL9 Missense_Mutation p.P1176H 0.28 deleterious(0) probably_damaging(0.994) TCGA-G4-6586-01 1 149901515 149901515 C A MTMR11 Missense_Mutation p.Q647H 0.42 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 1 150131547 150131547 G T PLEKHO1 Silent p.L353L 0.35 TCGA-G4-6586-01 1 150530506 150530506 G - ADAMTSL4 Frame_Shift_Del p.G757Vfs*62 0.31 TCGA-G4-6586-01 1 151115031 151115031 G A SEMA6C Nonsense_Mutation p.Q23* 0.29 TCGA-G4-6586-01 1 151315569 151315569 G - RFX5 Frame_Shift_Del p.P315Qfs*11 0.35 TCGA-G4-6586-01 1 151318741 151318741 G - RFX5 Frame_Shift_Del p.P19Qfs*28 0.35 TCGA-G4-6586-01 1 152286914 152286914 T C FLG Missense_Mutation p.K150E 0.35 possibly_damaging(0.535) TCGA-G4-6586-01 1 152382053 152382053 C T CRNN 3'UTR 0.42 TCGA-G4-6586-01 1 152884257 152884257 T C IVL 3'UTR 0.29 TCGA-G4-6586-01 1 15386778 15386778 C T KAZN Missense_Mutation p.R343W 0.31 deleterious(0.04) probably_damaging(0.985) TCGA-G4-6586-01 1 154947229 154947232 ACAA - CKS1B Frame_Shift_Del p.Q5Ffs*23 0.35 TCGA-G4-6586-01 1 155041387 155041388 - G EFNA4 Intron 0.34 TCGA-G4-6586-01 1 155408481 155408481 T - ASH1L Frame_Shift_Del p.N1822Tfs*2 0.27 TCGA-G4-6586-01 1 155736034 155736034 G - GON4L Frame_Shift_Del p.P1077Lfs*24 0.29 TCGA-G4-6586-01 1 156374180 156374180 A G C1orf61 3'UTR 0.34 TCGA-G4-6586-01 1 1563967 1563967 C T MIB2 Silent p.D804D 0.30 TCGA-G4-6586-01 1 156628935 156628935 G T BCAN 3'UTR 0.33 TCGA-G4-6586-01 1 156702133 156702133 C A RRNAD1 Silent p.A99A 0.30 TCGA-G4-6586-01 1 156777069 156777069 C T SH2D2A Silent p.Q367Q 0.38 TCGA-G4-6586-01 1 156912567 156912567 G A ARHGEF11 Missense_Mutation p.R1081W 0.30 deleterious(0) probably_damaging(0.994) TCGA-G4-6586-01 1 15753686 15753688 AGG - EFHD2 In_Frame_Del p.E167del 0.39 TCGA-G4-6586-01 1 158669532 158669532 T - OR6K2 Frame_Shift_Del p.K304Sfs*3 0.30 TCGA-G4-6586-01 1 15899935 15899935 T - AGMAT 3'UTR 0.74 TCGA-G4-6586-01 1 159163272 159163272 G A CADM3 Missense_Mutation p.A182T 0.29 tolerated(0.6) benign(0.005) TCGA-G4-6586-01 1 160012074 160012074 G A KCNJ10 Silent p.G83G 0.21 TCGA-G4-6586-01 1 160968529 160968529 C T F11R 3'UTR 0.09 TCGA-G4-6586-01 1 161130594 161130594 G A USP21 Missense_Mutation p.R55Q 0.17 tolerated_low_confidence(0.17) probably_damaging(0.947) TCGA-G4-6586-01 1 161196717 161196717 T C TOMM40L Missense_Mutation p.V52A 0.33 deleterious(0.02) benign(0.007) TCGA-G4-6586-01 1 162325040 162325040 C T NOS1AP Missense_Mutation p.A220V 0.35 deleterious(0.05) benign(0.251) TCGA-G4-6586-01 1 167778838 167778838 G T ADCY10 3'Flank 0.36 TCGA-G4-6586-01 1 168215625 168215625 T C SFT2D2 3'UTR 0.26 TCGA-G4-6586-01 1 169356289 169356289 T - BLZF1 Frame_Shift_Del p.F359Lfs*27 0.27 TCGA-G4-6586-01 1 17022997 17022997 C T ESPNP RNA 0.33 TCGA-G4-6586-01 1 171519301 171519301 T C PRRC2C Silent p.F1681F 0.32 TCGA-G4-6586-01 1 171561096 171561096 T C PRRC2C 3'UTR 0.33 TCGA-G4-6586-01 1 171604911 171604911 A G MYOC 3'UTR 0.45 TCGA-G4-6586-01 1 171751011 171751011 G A METTL13 5'UTR 0.30 TCGA-G4-6586-01 1 172628521 172628521 G A FASLG Silent p.P60P 0.36 TCGA-G4-6586-01 1 17294837 17294837 G A CROCC Missense_Mutation p.R1667H 0.37 possibly_damaging(0.715) TCGA-G4-6586-01 1 177898865 177898865 G A SEC16B 3'UTR 0.24 TCGA-G4-6586-01 1 17950882 17950882 T C ARHGEF10L Missense_Mutation p.F401L 0.28 deleterious(0.01) possibly_damaging(0.651) TCGA-G4-6586-01 1 183852962 183852962 A G RGL1 Missense_Mutation p.E253G 0.32 tolerated(0.21) benign(0.014) TCGA-G4-6586-01 1 184764442 184764442 G A FAM129A Missense_Mutation p.A819V 0.21 tolerated_low_confidence(0.05) benign(0.01) TCGA-G4-6586-01 1 185972937 185972937 G T HMCN1 Missense_Mutation p.G1479V 0.28 probably_damaging(1) TCGA-G4-6586-01 1 19651238 19651238 T C PQLC2 Silent p.A92A 0.38 TCGA-G4-6586-01 1 200635459 200635461 AGA - DDX59 In_Frame_Del p.L137del 0.29 TCGA-G4-6586-01 1 20063892 20063893 AG - TMCO4 Frame_Shift_Del p.F412Lfs*180 0.25 TCGA-G4-6586-01 1 200819183 200819183 C A CAMSAP2 Missense_Mutation p.P1096T 0.32 tolerated(0.45) benign(0.037) TCGA-G4-6586-01 1 200943294 200943294 C T KIF21B Missense_Mutation p.V1615I 0.29 tolerated(0.34) benign(0.013) TCGA-G4-6586-01 1 200944771 200944771 C T KIF21B Silent p.T1490T 0.35 TCGA-G4-6586-01 1 201036112 201036112 A G CACNA1S Missense_Mutation p.Y854H 0.40 deleterious(0.02) possibly_damaging(0.797) TCGA-G4-6586-01 1 201981807 201981807 G A ELF3 Missense_Mutation p.G173D 0.34 tolerated(0.21) benign(0.051) TCGA-G4-6586-01 1 202104836 202104836 G A ARL8A Missense_Mutation p.P124L 0.25 deleterious(0) probably_damaging(0.976) TCGA-G4-6586-01 1 203143635 203143635 C T MYBPH Missense_Mutation p.R144H 0.32 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 1 203154427 203154427 G T CHI3L1 Missense_Mutation p.R48S 0.39 deleterious(0.02) benign(0.061) TCGA-G4-6586-01 1 203154457 203154457 C T CHI3L1 Missense_Mutation p.D38N 0.30 tolerated(0.48) benign(0.004) TCGA-G4-6586-01 1 20501656 20501656 A - PLA2G2C Intron 0.28 TCGA-G4-6586-01 1 205768201 205768201 G A SLC41A1 Missense_Mutation p.A194V 0.23 deleterious(0.02) probably_damaging(0.925) TCGA-G4-6586-01 1 212193510 212193510 A - INTS7 Frame_Shift_Del p.S109Lfs*2 0.28 TCGA-G4-6586-01 1 212534138 212534138 A G PPP2R5A 3'UTR 0.34 TCGA-G4-6586-01 1 212911800 212911800 G - NSL1 Frame_Shift_Del p.Q266Rfs*41 0.26 TCGA-G4-6586-01 1 215793922 215793922 A - KCTD3 Frame_Shift_Del p.S806Vfs*16 0.29 TCGA-G4-6586-01 1 215814065 215814065 G A USH2A Nonsense_Mutation p.R4935* 0.33 TCGA-G4-6586-01 1 215814067 215814067 T C USH2A Missense_Mutation p.Y4934C 0.35 probably_damaging(0.977) TCGA-G4-6586-01 1 216262386 216262386 A - USH2A Frame_Shift_Del p.F1618Lfs*17 0.31 TCGA-G4-6586-01 1 216896605 216896605 A G ESRRG 5'UTR 0.30 TCGA-G4-6586-01 1 220824029 220824029 G A MARK1 Missense_Mutation p.R513Q 0.42 tolerated(0.05) possibly_damaging(0.552) TCGA-G4-6586-01 1 221875720 221875720 T C DUSP10 3'UTR 0.27 TCGA-G4-6586-01 1 222794534 222794534 T C MIA3 Missense_Mutation p.F56S 0.37 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 1 225976982 225976982 A G SRP9 Missense_Mutation p.K61R 0.35 tolerated(0.18) possibly_damaging(0.721) TCGA-G4-6586-01 1 226111819 226111819 G A RP4-559A3.7 5'UTR 0.33 TCGA-G4-6586-01 1 226822389 226822389 C A ITPKB Missense_Mutation p.D942Y 0.39 deleterious(0) benign(0.36) TCGA-G4-6586-01 1 22848044 22848044 C A ZBTB40 Missense_Mutation p.A1035D 0.34 deleterious(0) benign(0.038) TCGA-G4-6586-01 1 229567741 229567741 C T ACTA1 Missense_Mutation p.G270S 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-G4-6586-01 1 2339916 2339916 G T PEX10 Missense_Mutation p.A192D 0.41 deleterious(0) probably_damaging(0.984) TCGA-G4-6586-01 1 23419073 23419073 G C LUZP1 Missense_Mutation p.S561C 0.39 deleterious(0) benign(0.009) TCGA-G4-6586-01 1 234458882 234458882 A G SLC35F3 Missense_Mutation p.T456A 0.31 tolerated(0.26) benign(0.016) TCGA-G4-6586-01 1 238046091 238046091 T A ZP4 Missense_Mutation p.K482N 0.25 deleterious(0.03) benign(0.03) TCGA-G4-6586-01 1 247464520 247464520 G A ZNF496 Silent p.I355I 0.38 TCGA-G4-6586-01 1 248084550 248084551 - A OR2T8 Frame_Shift_Ins p.M79Nfs*4 0.27 TCGA-G4-6586-01 1 248789732 248789732 T - OR2T11 Frame_Shift_Del p.K233Rfs*10 0.08 TCGA-G4-6586-01 1 249106186 249106186 G T SH3BP5L Silent p.G365G 0.09 TCGA-G4-6586-01 1 26314809 26314809 C T PAFAH2 Missense_Mutation p.R85H 0.22 tolerated(0.12) benign(0.059) TCGA-G4-6586-01 1 26361746 26361746 T C EXTL1 Silent p.L647L 0.32 TCGA-G4-6586-01 1 26487875 26487875 G A FAM110D Silent p.T31T 0.46 TCGA-G4-6586-01 1 27212510 27212510 A G GPN2 Missense_Mutation p.L228P 0.27 deleterious(0) possibly_damaging(0.908) TCGA-G4-6586-01 1 27875392 27875392 T C AHDC1 Missense_Mutation p.T1079A 0.21 tolerated_low_confidence(0.7) benign(0.388) TCGA-G4-6586-01 1 29095653 29095656 AAAG - YTHDF2 3'UTR 0.44 TCGA-G4-6586-01 1 31907086 31907086 T C SERINC2 3'UTR 0.43 TCGA-G4-6586-01 1 33138255 33138255 G T RBBP4 Missense_Mutation p.E352D 0.28 tolerated(0.23) benign(0.001) TCGA-G4-6586-01 1 33429895 33429895 G A RNF19B Missense_Mutation p.A131V 0.33 tolerated(0.07) benign(0.002) TCGA-G4-6586-01 1 35226735 35226735 G A GJB4 5'UTR 0.47 TCGA-G4-6586-01 1 35227523 35227523 G A GJB4 Missense_Mutation p.R223Q 0.30 tolerated(0.21) benign(0.002) TCGA-G4-6586-01 1 35227688 35227688 C - GJB4 3'UTR 0.34 TCGA-G4-6586-01 1 3547543 3547543 G A WRAP73 Missense_Mutation p.T460M 0.37 deleterious_low_confidence(0) benign(0.271) TCGA-G4-6586-01 1 36217056 36217056 C T CLSPN Missense_Mutation p.R608Q 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-G4-6586-01 1 36638143 36638143 G A MAP7D1 Missense_Mutation p.R180H 0.43 probably_damaging(0.99) TCGA-G4-6586-01 1 36886151 36886151 C - OSCP1 Frame_Shift_Del p.M296Wfs*15 0.25 TCGA-G4-6586-01 1 38079420 38079420 T C RSPO1 Missense_Mutation p.K194R 0.33 tolerated(0.2) benign(0.005) TCGA-G4-6586-01 1 40875432 40875432 T C SMAP2 Silent p.A109A 0.34 TCGA-G4-6586-01 1 40981941 40981941 G A EXO5 3'Flank 0.35 TCGA-G4-6586-01 1 44057174 44057174 T C PTPRF Missense_Mutation p.V494A 0.33 tolerated(0.09) benign(0.37) TCGA-G4-6586-01 1 52280370 52280370 A - NRD1 Frame_Shift_Del p.Y587Mfs*11 0.26 TCGA-G4-6586-01 1 53516241 53516241 A - SCP2 Intron 0.08 TCGA-G4-6586-01 1 53553414 53553414 G A SLC1A7 3'UTR 0.44 TCGA-G4-6586-01 1 59147795 59147795 T - MYSM1 Frame_Shift_Del p.K307Nfs*5 0.29 TCGA-G4-6586-01 1 62271164 62271164 G A INADL Missense_Mutation p.E532K 0.21 deleterious(0.01) possibly_damaging(0.881) TCGA-G4-6586-01 1 62905514 62905514 C T USP1 5'UTR 0.29 TCGA-G4-6586-01 1 63789423 63789423 C T FOXD3 Missense_Mutation p.R232W 0.35 deleterious(0) probably_damaging(0.972) TCGA-G4-6586-01 1 65113564 65113564 C T CACHD1 Missense_Mutation p.R362W 0.30 deleterious(0.01) benign(0.421) TCGA-G4-6586-01 1 65305349 65305349 C T JAK1 Missense_Mutation p.E927K 0.34 tolerated(0.06) possibly_damaging(0.746) TCGA-G4-6586-01 1 65897552 65897552 T G LEPROT Missense_Mutation p.F116V 0.35 deleterious(0) possibly_damaging(0.758) TCGA-G4-6586-01 1 68564481 68564481 A - WLS Intron 0.30 TCGA-G4-6586-01 1 71478121 71478121 C T PTGER3 Missense_Mutation p.C315Y 0.25 tolerated(0.06) probably_damaging(0.991) TCGA-G4-6586-01 1 76378382 76378382 A - MSH4 Frame_Shift_Del p.N875Tfs*17 0.23 TCGA-G4-6586-01 1 84981939 84981939 A - SPATA1 RNA 0.34 TCGA-G4-6586-01 1 85498596 85498596 T C MCOLN3 Silent p.T198T 0.37 TCGA-G4-6586-01 1 87029414 87029414 T C CLCA4 Silent p.P173P 0.29 TCGA-G4-6586-01 1 887844 887844 T C NOC2L Missense_Mutation p.Y380C 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 1 9324293 9324293 C T H6PD Missense_Mutation p.R581C 0.41 deleterious(0.01) possibly_damaging(0.846) TCGA-G4-6586-01 1 979629 979629 G A AGRN Missense_Mutation p.G714S 0.34 tolerated(0.58) probably_damaging(0.992) TCGA-G4-6586-01 20 10603522 10603522 A - SLX4IP Frame_Shift_Del p.V243Lfs*21 0.20 TCGA-G4-6586-01 20 1293097 1293097 C T SDCBP2 Missense_Mutation p.V206M 0.31 tolerated(0.08) benign(0.21) TCGA-G4-6586-01 20 22563776 22563776 C A FOXA2 Missense_Mutation p.S35I 0.26 deleterious(0.01) possibly_damaging(0.69) TCGA-G4-6586-01 20 23016793 23016793 C T SSTR4 Silent p.L225L 0.22 TCGA-G4-6586-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.20 TCGA-G4-6586-01 20 239780 239781 - G DEFB132 Frame_Shift_Ins p.E43Gfs*24 0.29 TCGA-G4-6586-01 20 30071968 30071968 G A REM1 Missense_Mutation p.R211H 0.34 deleterious(0) possibly_damaging(0.561) TCGA-G4-6586-01 20 30602834 30602834 C T CCM2L Missense_Mutation p.P53L 0.33 deleterious(0.02) possibly_damaging(0.624) TCGA-G4-6586-01 20 30789952 30789952 G - PLAGL2 Frame_Shift_Del p.W11Gfs*15 0.34 TCGA-G4-6586-01 20 3214613 3214613 C T SLC4A11 Missense_Mutation p.A230T 0.18 tolerated(0.06) possibly_damaging(0.903) TCGA-G4-6586-01 20 34832703 34832703 T C AAR2 Missense_Mutation p.L281P 0.36 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 20 35433264 35433264 C T SOGA1 Silent p.T987T 0.33 TCGA-G4-6586-01 20 36560134 36560134 G T VSTM2L Silent p.S73S 0.24 TCGA-G4-6586-01 20 40034131 40034131 T C CHD6 Splice_Site p.X2418_splice 0.24 TCGA-G4-6586-01 20 40113211 40113211 G A CHD6 Missense_Mutation p.L680F 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 20 41514490 41514490 A G PTPRT Silent p.I57I 0.29 TCGA-G4-6586-01 20 42815332 42815332 C T JPH2 Missense_Mutation p.R5H 0.42 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 20 44477253 44477253 C T ACOT8 Silent p.S108S 0.30 TCGA-G4-6586-01 20 44523668 44523668 C - CTSA Frame_Shift_Del p.C349Afs*36 0.42 TCGA-G4-6586-01 20 45354506 45354506 C T SLC2A10 Silent p.G277G 0.35 TCGA-G4-6586-01 20 4708636 4708637 - T PRND 3'UTR 0.24 TCGA-G4-6586-01 20 47865678 47865678 G A ZNFX1 Missense_Mutation p.R1295C 0.42 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 20 48604752 48604752 T C SNAI1 3'UTR 0.47 TCGA-G4-6586-01 20 50701502 50701502 C T ZFP64 Missense_Mutation p.R511H 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-G4-6586-01 20 52192691 52192691 G T ZNF217 Missense_Mutation p.P871H 0.43 tolerated(0.05) possibly_damaging(0.625) TCGA-G4-6586-01 20 60903385 60903385 G - LAMA5 Frame_Shift_Del p.L1522Wfs*35 0.31 TCGA-G4-6586-01 20 61542717 61542717 C T DIDO1 Missense_Mutation p.R83H 0.26 probably_damaging(0.999) TCGA-G4-6586-01 20 61959760 61959760 G A COL20A1 Missense_Mutation p.G1231S 0.35 tolerated(0.12) benign(0.15) TCGA-G4-6586-01 20 62290704 62290704 C T RTEL1 5'UTR 0.47 TCGA-G4-6586-01 20 62321366 62321366 A G RTEL1 Intron 0.52 TCGA-G4-6586-01 20 62492878 62492878 G A ABHD16B 5'UTR 0.35 TCGA-G4-6586-01 20 62492892 62492892 T C C20ORF135 Missense_Mutation p.E109G 0.32 possibly_damaging(0.617) TCGA-G4-6586-01 20 6751024 6751024 G A BMP2 Missense_Mutation p.R84H 0.29 tolerated(0.11) probably_damaging(0.991) TCGA-G4-6586-01 20 853741 853741 G A ANGPT4 Silent p.G458G 0.33 TCGA-G4-6586-01 21 19628897 19628897 C T CHODL Nonsense_Mutation p.R51* 0.37 TCGA-G4-6586-01 21 28338171 28338171 G A ADAMTS5 Silent p.R180R 0.39 TCGA-G4-6586-01 21 31692142 31692142 C T KRTAP26-1 Missense_Mutation p.C71Y 0.33 tolerated(0.36) benign(0.047) TCGA-G4-6586-01 21 33368229 33368229 G A HUNK Missense_Mutation p.R485Q 0.30 tolerated_low_confidence(0.12) benign(0.015) TCGA-G4-6586-01 21 33671292 33671292 G A MRAP Missense_Mutation p.G4R 0.39 tolerated(0.9) benign(0.062) TCGA-G4-6586-01 21 34923541 34923541 C T SON Silent p.T668T 0.36 TCGA-G4-6586-01 21 34926059 34926059 C T SON Missense_Mutation p.H1508Y 0.39 benign(0.152) TCGA-G4-6586-01 21 36042848 36042848 G - CLIC6 Frame_Shift_Del p.G389Afs*44 0.41 TCGA-G4-6586-01 21 40795144 40795144 T G LCA5L Missense_Mutation p.I199L 0.41 tolerated(0.74) benign(0.016) TCGA-G4-6586-01 21 41270402 41270402 G A PCP4 Missense_Mutation p.R4Q 0.29 tolerated_low_confidence(0.08) benign(0.001) TCGA-G4-6586-01 21 41384837 41384837 T C DSCAM 3'UTR 0.35 TCGA-G4-6586-01 21 43792876 43792876 T - TMPRSS3 Frame_Shift_Del p.T454Pfs*8 0.33 TCGA-G4-6586-01 21 43897435 43897435 C T RSPH1 Silent p.T231T 0.37 TCGA-G4-6586-01 21 44195411 44195411 G - PDE9A 3'UTR 0.34 TCGA-G4-6586-01 21 45483496 45483496 A G TRAPPC10 Missense_Mutation p.M290V 0.30 tolerated(0.14) benign(0.082) TCGA-G4-6586-01 21 46914823 46914823 A G COL18A1 Silent p.G989G 0.28 TCGA-G4-6586-01 21 47570432 47570432 C T FTCD Missense_Mutation p.R215H 0.26 deleterious(0.03) possibly_damaging(0.818) TCGA-G4-6586-01 21 47581449 47581449 G A SPATC1L Silent p.P289P 0.37 TCGA-G4-6586-01 21 47754665 47754665 C T PCNT Missense_Mutation p.R208C 0.30 benign(0) TCGA-G4-6586-01 21 47965811 47965813 AGG - DIP2A In_Frame_Del p.G779del 0.36 TCGA-G4-6586-01 22 17119556 17119556 G A TPTEP1 RNA 0.39 TCGA-G4-6586-01 22 19026591 19026592 - G DGCR2 Frame_Shift_Ins p.G481Wfs*6 0.28 TCGA-G4-6586-01 22 19435222 19435222 C A C22orf39 Missense_Mutation p.G34V 0.35 tolerated_low_confidence(0.14) benign(0.066) TCGA-G4-6586-01 22 19709996 19709996 C T SEPT5 Nonsense_Mutation p.Q367* 0.42 TCGA-G4-6586-01 22 19968675 19968675 G - ARVCF Intron 0.38 TCGA-G4-6586-01 22 20385139 20385139 A G AC023490.1 3'Flank 0.57 TCGA-G4-6586-01 22 20819672 20819674 CTT - KLHL22 In_Frame_Del p.K195del 0.46 TCGA-G4-6586-01 22 21133651 21133651 G A SERPIND1 Silent p.A17A 0.30 TCGA-G4-6586-01 22 21988745 21988745 G T CCDC116 Silent p.L169L 0.34 TCGA-G4-6586-01 22 22057690 22057690 T C YPEL1 Missense_Mutation p.E80G 0.09 tolerated(0.27) benign(0.158) TCGA-G4-6586-01 22 22712352 22712352 C - IGLV1-47 Frame_Shift_Del p.Q35Rfs*81 0.16 TCGA-G4-6586-01 22 23466636 23466636 G A RTDR1 Intron 0.32 TCGA-G4-6586-01 22 24494154 24494154 C T CABIN1 Silent p.D1372D 0.41 TCGA-G4-6586-01 22 25264403 25264403 G A SGSM1 Missense_Mutation p.R352H 0.40 tolerated(1) benign(0.002) TCGA-G4-6586-01 22 28378883 28378883 A G TTC28 Missense_Mutation p.S2258P 0.30 deleterious_low_confidence(0.03) benign(0.008) TCGA-G4-6586-01 22 29449693 29449693 T A ZNRF3 3'UTR 0.32 TCGA-G4-6586-01 22 29835329 29835329 A - RFPL1 Intron 0.50 TCGA-G4-6586-01 22 29966150 29966150 C T NIPSNAP1 Splice_Site p.X91_splice 0.39 TCGA-G4-6586-01 22 30890943 30890943 G T SEC14L4 Silent p.G143G 0.29 TCGA-G4-6586-01 22 32302502 32302503 - T DEPDC5 3'UTR 0.24 TCGA-G4-6586-01 22 32330011 32330011 C T C22orf24 3'UTR 0.27 TCGA-G4-6586-01 22 36902309 36902309 C T FOXRED2 Missense_Mutation p.R54H 0.41 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 22 37159019 37159019 G A IFT27 Nonsense_Mutation p.R131* 0.42 TCGA-G4-6586-01 22 37322109 37322109 G T CSF2RB Missense_Mutation p.R94M 0.35 deleterious(0) possibly_damaging(0.836) TCGA-G4-6586-01 22 37627356 37627356 G A RAC2 Silent p.D121D 0.34 TCGA-G4-6586-01 22 38934388 38934388 A G DMC1 Silent p.F229F 0.40 TCGA-G4-6586-01 22 38978739 38978739 C T FAM227A Intron 0.24 TCGA-G4-6586-01 22 40807617 40807617 G - MKL1 Frame_Shift_Del p.P858Rfs*43 0.28 TCGA-G4-6586-01 22 41664102 41664102 A G RANGAP1 Missense_Mutation p.L100P 0.27 deleterious(0) probably_damaging(0.996) TCGA-G4-6586-01 22 42458928 42458928 C T NAGA Missense_Mutation p.R287H 0.41 deleterious(0) probably_damaging(0.992) TCGA-G4-6586-01 22 42462729 42462729 G A NAGA Silent p.G194G 0.32 TCGA-G4-6586-01 22 43933370 43933370 G A EFCAB6 Missense_Mutation p.P1312L 0.38 tolerated(0.06) benign(0.168) TCGA-G4-6586-01 22 44282266 44282266 C - PNPLA5 Frame_Shift_Del p.G289Afs*30 0.40 TCGA-G4-6586-01 22 45598945 45598945 G A KIAA0930 Nonsense_Mutation p.R265* 0.34 TCGA-G4-6586-01 22 45765835 45765835 T - SMC1B Frame_Shift_Del p.R807Dfs*2 0.29 TCGA-G4-6586-01 22 50278941 50278941 T C ZBED4 Missense_Mutation p.V544A 0.34 tolerated(0.72) benign(0.001) TCGA-G4-6586-01 22 50703288 50703288 G T MAPK11 3'UTR 0.13 TCGA-G4-6586-01 22 51017526 51017526 G A CHKB 3'UTR 0.38 TCGA-G4-6586-01 2 100011344 100011347 TAAG - EIF5B Splice_Site p.X1085_splice 0.33 TCGA-G4-6586-01 2 100722327 100722327 C T AFF3 5'Flank 0.38 TCGA-G4-6586-01 2 101767603 101767603 C - TBC1D8 Frame_Shift_Del p.G38Afs*40 0.38 TCGA-G4-6586-01 2 106713185 106713186 AC CAG UXS1 Frame_Shift_Ins p.E380Gfs*19 0.29 TCGA-G4-6586-01 2 1079334 1079334 G A SNTG2 Missense_Mutation p.G68D 0.21 tolerated(0.66) benign(0.003) TCGA-G4-6586-01 2 113089869 113089869 A G ZC3H6 Missense_Mutation p.Q1125R 0.33 tolerated(0.2) probably_damaging(0.985) TCGA-G4-6586-01 2 11332385 11332385 T - ROCK2 Frame_Shift_Del p.K1351Sfs*17 0.22 TCGA-G4-6586-01 2 114256810 114256810 T G FOXD4L1 5'UTR 0.22 TCGA-G4-6586-01 2 118753069 118753069 A G CCDC93 Missense_Mutation p.F158L 0.35 tolerated(0.21) benign(0.102) TCGA-G4-6586-01 2 122205895 122205895 C T CLASP1 Silent p.P566P 0.29 TCGA-G4-6586-01 2 127451517 127451517 A G GYPC Missense_Mutation p.I62V 0.39 tolerated(0.09) benign(0.148) TCGA-G4-6586-01 2 128476860 128476860 C T WDR33 Silent p.G913G 0.44 TCGA-G4-6586-01 2 130910728 130910728 C T SMPD4 Missense_Mutation p.R720Q 0.27 tolerated(0.05) benign(0.006) TCGA-G4-6586-01 2 131806003 131806003 C T FAM168B 3'UTR 0.28 TCGA-G4-6586-01 2 135011976 135011976 T C MGAT5 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-G4-6586-01 2 136873443 136873443 C A CXCR4 Missense_Mutation p.G23W 0.25 tolerated(0.06) possibly_damaging(0.808) TCGA-G4-6586-01 2 137639835 137639835 C A THSD7B Silent p.S29S 0.32 TCGA-G4-6586-01 2 139318487 139318487 C T SPOPL Missense_Mutation p.A276V 0.32 deleterious(0.03) possibly_damaging(0.8) TCGA-G4-6586-01 2 139428574 139428574 T C NXPH2 Missense_Mutation p.Y238C 0.10 deleterious(0.02) probably_damaging(0.976) TCGA-G4-6586-01 2 149241626 149241626 A G MBD5 Intron 0.33 TCGA-G4-6586-01 2 149861973 149861973 A - KIF5C Frame_Shift_Del p.S816Vfs*68 0.26 TCGA-G4-6586-01 2 152342164 152342164 C T NEB 3'UTR 0.52 TCGA-G4-6586-01 2 152404208 152404208 A G NEB Silent p.H6734H 0.06 TCGA-G4-6586-01 2 158272421 158272421 T G CYTIP Missense_Mutation p.E283A 0.38 tolerated(0.12) possibly_damaging(0.697) TCGA-G4-6586-01 2 162280486 162280486 C T TBR1 Silent p.G599G 0.27 TCGA-G4-6586-01 2 163302907 163302907 G A KCNH7 Missense_Mutation p.T392I 0.32 tolerated(0.07) benign(0.035) TCGA-G4-6586-01 2 166626705 166626705 C T GALNT3 Missense_Mutation p.R169Q 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-G4-6586-01 2 168100190 168100190 A - XIRP2 Frame_Shift_Del p.K764Rfs*4 0.17 TCGA-G4-6586-01 2 170465267 170465267 A G PPIG Missense_Mutation p.I126V 0.28 tolerated(0.09) possibly_damaging(0.549) TCGA-G4-6586-01 2 170806359 170806359 C A UBR3 Missense_Mutation p.P1110H 0.31 deleterious(0.03) possibly_damaging(0.72) TCGA-G4-6586-01 2 172951506 172951506 G A DLX1 Silent p.R146R 0.40 TCGA-G4-6586-01 2 172967031 172967031 C T DLX2 Missense_Mutation p.G79D 0.27 tolerated(0.22) benign(0.091) TCGA-G4-6586-01 2 17697923 17697923 A - RAD51AP2 Frame_Shift_Del p.L587Cfs*8 0.15 TCGA-G4-6586-01 2 178095607 178095607 G A NFE2L2 Missense_Mutation p.P575L 0.06 deleterious(0) probably_damaging(0.951) TCGA-G4-6586-01 2 179574542 179574542 T C TTN Missense_Mutation p.T9502A 0.34 TCGA-G4-6586-01 2 179579172 179579172 C T TTN Missense_Mutation p.V8777I 0.31 TCGA-G4-6586-01 2 179587536 179587536 G A TTN Missense_Mutation p.R7364W 0.44 TCGA-G4-6586-01 2 180851507 180851507 G A CWC22 Missense_Mutation p.R41W 0.34 deleterious(0) probably_damaging(0.971) TCGA-G4-6586-01 2 188343348 188343348 A G TFPI Intron 0.10 TCGA-G4-6586-01 2 189434818 189434818 C T GULP1 Silent p.L194L 0.09 TCGA-G4-6586-01 2 198175386 198175386 G C ANKRD44 5'UTR 0.36 TCGA-G4-6586-01 2 198272772 198272772 G A SF3B1 Missense_Mutation p.R397C 0.29 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 2 201507387 201507387 C T AOX1 Missense_Mutation p.R904C 0.39 deleterious(0.01) benign(0.262) TCGA-G4-6586-01 2 202900922 202900922 G T FZD7 Missense_Mutation p.G518C 0.33 tolerated(0.06) possibly_damaging(0.801) TCGA-G4-6586-01 2 203383554 203383554 C T BMPR2 Nonsense_Mutation p.R211* 0.27 TCGA-G4-6586-01 2 203922115 203922115 G A NBEAL1 Missense_Mutation p.A152T 0.43 deleterious(0) possibly_damaging(0.581) TCGA-G4-6586-01 2 208633477 208633477 C T FZD5 5'UTR 0.69 TCGA-G4-6586-01 2 209025577 209025577 C - CRYGA Frame_Shift_Del p.G159Vfs*9 0.34 TCGA-G4-6586-01 2 219508993 219508993 T C ZNF142 Missense_Mutation p.D749G 0.31 tolerated(0.56) possibly_damaging(0.539) TCGA-G4-6586-01 2 219826453 219826453 G - CDK5R2 3'UTR 0.26 TCGA-G4-6586-01 2 220357320 220357320 C T SPEG Missense_Mutation p.R3206W 0.15 probably_damaging(0.999) TCGA-G4-6586-01 2 222436943 222436943 A G EPHA4 Missense_Mutation p.L9P 0.32 deleterious(0.02) benign(0.044) TCGA-G4-6586-01 2 223096804 223096804 C T PAX3 Missense_Mutation p.R262Q 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6586-01 2 223168784 223168784 C T CCDC140 Missense_Mutation p.R55W 0.36 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-G4-6586-01 2 223920168 223920168 T - KCNE4 3'UTR 0.27 TCGA-G4-6586-01 2 225346611 225346611 G A CUL3 Missense_Mutation p.T676I 0.25 deleterious(0.01) benign(0.058) TCGA-G4-6586-01 2 230661315 230661315 A - TRIP12 Frame_Shift_Del p.S1195Lfs*24 0.24 TCGA-G4-6586-01 2 231134268 231134268 A G SP140 Missense_Mutation p.H421R 0.31 tolerated(0.35) benign(0.001) TCGA-G4-6586-01 2 231134596 231134596 A G SP140 Missense_Mutation p.M458V 0.30 deleterious(0.01) benign(0.189) TCGA-G4-6586-01 2 231973401 231973402 - A HTR2B Frame_Shift_Ins p.K426* 0.29 TCGA-G4-6586-01 2 233323376 233323376 C A ALPI Silent p.A406A 0.36 TCGA-G4-6586-01 2 233944058 233944058 G A INPP5D Missense_Mutation p.V50I 0.33 deleterious(0) probably_damaging(0.989) TCGA-G4-6586-01 2 234602021 234602021 T C UGT1A6 Missense_Mutation p.I124T 0.29 tolerated(0.61) benign(0.003) TCGA-G4-6586-01 2 234851324 234851324 G A TRPM8 Missense_Mutation p.A211T 0.15 tolerated(0.81) benign(0.316) TCGA-G4-6586-01 2 235405018 235405018 G A ARL4C Silent p.G71G 0.33 TCGA-G4-6586-01 2 235951469 235951469 C T SH3BP4 Missense_Mutation p.L686F 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6586-01 2 237489569 237489569 G A ACKR3 Missense_Mutation p.S154N 0.40 tolerated(0.96) benign(0.007) TCGA-G4-6586-01 2 238249152 238249152 C T COL6A3 Missense_Mutation p.E2803K 0.21 unknown(0) TCGA-G4-6586-01 2 238820217 238820217 T C RAMP1 Missense_Mutation p.L80P 0.18 deleterious(0) probably_damaging(0.95) TCGA-G4-6586-01 2 239007001 239007001 G - SCLY 3'UTR 0.29 TCGA-G4-6586-01 2 239096862 239096862 G C ILKAP Missense_Mutation p.A112G 0.28 tolerated(0.07) possibly_damaging(0.524) TCGA-G4-6586-01 2 241631643 241631643 C T AQP12A Silent p.A92A 0.36 TCGA-G4-6586-01 2 242174917 242174917 C T HDLBP Missense_Mutation p.M999I 0.32 tolerated(0.12) benign(0.169) TCGA-G4-6586-01 2 25040661 25040661 A C CENPO Missense_Mutation p.S297R 0.42 deleterious(0) possibly_damaging(0.721) TCGA-G4-6586-01 2 25972696 25972696 C A ASXL2 Missense_Mutation p.A577S 0.34 tolerated(0.2) benign(0.009) TCGA-G4-6586-01 2 27590458 27590458 G A EIF2B4 Intron 0.38 TCGA-G4-6586-01 2 27601234 27601234 A C ZNF513 Silent p.A268A 0.23 TCGA-G4-6586-01 2 27601597 27601597 C T ZNF513 Missense_Mutation p.R179H 0.40 tolerated(0.2) possibly_damaging(0.812) TCGA-G4-6586-01 2 31411199 31411199 A G CAPN14 Silent p.G505G 0.38 TCGA-G4-6586-01 2 32740574 32740574 A G BIRC6 Missense_Mutation p.S3696G 0.41 benign(0.093) TCGA-G4-6586-01 2 32754748 32754748 C T BIRC6 Missense_Mutation p.A3984V 0.29 probably_damaging(0.96) TCGA-G4-6586-01 2 40656844 40656844 C T SLC8A1 Missense_Mutation p.G193R 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 2 47748392 47748392 C T KCNK12 Missense_Mutation p.R316H 0.26 tolerated(0.08) benign(0.238) TCGA-G4-6586-01 2 55645980 55645980 C - CCDC88A Frame_Shift_Del p.V46Yfs*3 0.25 TCGA-G4-6586-01 2 55898471 55898471 G A PNPT1 Missense_Mutation p.T320M 0.26 tolerated(0.12) benign(0.165) TCGA-G4-6586-01 2 61238905 61238905 A G PUS10 Missense_Mutation p.Y41H 0.29 tolerated(0.46) benign(0.002) TCGA-G4-6586-01 2 63540396 63540396 C T WDPCP Missense_Mutation p.R600H 0.30 tolerated(0.12) benign(0.21) TCGA-G4-6586-01 2 69553217 69553217 A - GFPT1 3'UTR 0.35 TCGA-G4-6586-01 2 70142522 70142522 G A MXD1 Silent p.E20E 0.36 TCGA-G4-6586-01 2 71376478 71376478 A G MPHOSPH10 Silent p.K597K 0.31 TCGA-G4-6586-01 2 73457263 73457263 G A PRADC1 Missense_Mutation p.A49V 0.36 deleterious(0) probably_damaging(0.996) TCGA-G4-6586-01 2 74086418 74086418 A G STAMBP Missense_Mutation p.D348G 0.07 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 2 74598237 74598237 G A DCTN1 Missense_Mutation p.R238W 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 2 74644518 74644518 A G C2orf81 Silent p.P6P 0.38 TCGA-G4-6586-01 2 75914998 75914999 - T GCFC2 Frame_Shift_Ins p.V549Sfs*42 0.22 TCGA-G4-6586-01 2 79312346 79312346 T - REG1B Frame_Shift_Del p.N166Tfs*5 0.35 TCGA-G4-6586-01 2 85276587 85276587 C A KCMF1 Missense_Mutation p.L234M 0.33 deleterious(0.04) probably_damaging(0.936) TCGA-G4-6586-01 2 86067277 86067277 C T ST3GAL5 Missense_Mutation p.R416H 0.18 deleterious(0) benign(0.247) TCGA-G4-6586-01 2 86400876 86400876 C T IMMT Silent p.S106S 0.39 TCGA-G4-6586-01 2 88327918 88327918 C A KRCC1 Silent p.T55T 0.31 TCGA-G4-6586-01 2 89475919 89475919 C A IGKV2-24 Missense_Mutation p.D85Y 0.29 deleterious(0) probably_damaging(0.933) TCGA-G4-6586-01 2 89986896 89986896 T A IGKV2D-29 Nonsense_Mutation p.Y59* 0.38 TCGA-G4-6586-01 2 95537790 95537790 G A TEKT4 Missense_Mutation p.V156M 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-G4-6586-01 2 96781613 96781613 G A ADRA2B Silent p.D92D 0.37 TCGA-G4-6586-01 2 97034738 97034738 C T NCAPH Missense_Mutation p.A676V 0.34 tolerated(0.33) benign(0.003) TCGA-G4-6586-01 2 97527583 97527583 C T SEMA4C Missense_Mutation p.A498T 0.28 deleterious(0.01) benign(0.176) TCGA-G4-6586-01 2 98354471 98354471 C T ZAP70 Missense_Mutation p.P546L 0.46 deleterious(0.04) possibly_damaging(0.596) TCGA-G4-6586-01 2 98999859 98999859 C A CNGA3 Missense_Mutation p.P135H 0.28 tolerated(0.05) possibly_damaging(0.711) TCGA-G4-6586-01 3 100455421 100455421 G A TFG Silent p.G194G 0.06 TCGA-G4-6586-01 3 100493509 100493509 T C ABI3BP Missense_Mutation p.T780A 0.35 deleterious(0) possibly_damaging(0.899) TCGA-G4-6586-01 3 10436198 10436198 G A ATP2B2 Intron 0.09 TCGA-G4-6586-01 3 10861469 10861469 T - SLC6A11 Frame_Shift_Del p.Y157Tfs*2 0.24 TCGA-G4-6586-01 3 11058768 11058768 C T SLC6A1 5'UTR 0.26 TCGA-G4-6586-01 3 112998267 112998267 C T BOC Missense_Mutation p.S662L 0.20 tolerated(0.2) probably_damaging(1) TCGA-G4-6586-01 3 113371901 113371901 A - KIAA2018 3'UTR 0.33 TCGA-G4-6586-01 3 119132913 119132913 A G ARHGAP31 Missense_Mutation p.T713A 0.28 tolerated(1) benign(0.001) TCGA-G4-6586-01 3 119165877 119165877 A - TMEM39A Frame_Shift_Del p.F188Sfs*37 0.39 TCGA-G4-6586-01 3 119642317 119642317 T C GSK3B Missense_Mutation p.Y127C 0.27 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 3 121350629 121350629 G - HCLS1 3'UTR 0.18 TCGA-G4-6586-01 3 121353135 121353135 C T HCLS1 Silent p.R274R 0.38 TCGA-G4-6586-01 3 122545703 122545703 C T DIRC2 Missense_Mutation p.A165V 0.35 deleterious(0.01) benign(0.034) TCGA-G4-6586-01 3 122545725 122545725 G A DIRC2 Silent p.T172T 0.27 TCGA-G4-6586-01 3 122631738 122631738 C T SEMA5B Missense_Mutation p.V947M 0.31 tolerated(0.08) possibly_damaging(0.742) TCGA-G4-6586-01 3 123019009 123019009 G A ADCY5 Missense_Mutation p.T953M 0.32 deleterious(0.01) possibly_damaging(0.696) TCGA-G4-6586-01 3 124044860 124044860 G A KALRN Missense_Mutation p.V374M 0.36 tolerated(0.15) probably_damaging(0.91) TCGA-G4-6586-01 3 125828918 125828918 G A ALDH1L1 Missense_Mutation p.P749L 0.30 deleterious(0) probably_damaging(0.98) TCGA-G4-6586-01 3 126261394 126261394 C T CHST13 Silent p.S333S 0.32 TCGA-G4-6586-01 3 128753059 128753059 G A EFCC1 Missense_Mutation p.G446S 0.34 tolerated(0.91) benign(0.008) TCGA-G4-6586-01 3 132224254 132224254 A - DNAJC13 Frame_Shift_Del p.G1667Vfs*22 0.29 TCGA-G4-6586-01 3 132320982 132320982 T - ACKR4 3'UTR 0.09 TCGA-G4-6586-01 3 133098798 133098798 G A TMEM108 Missense_Mutation p.M81I 0.36 tolerated_low_confidence(0.07) benign(0.01) TCGA-G4-6586-01 3 138189830 138189830 G T ESYT3 Missense_Mutation p.G568C 0.43 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 3 138665621 138665621 G A FOXL2 5'UTR 0.36 TCGA-G4-6586-01 3 140785469 140785469 G A SPSB4 Missense_Mutation p.D175N 0.35 deleterious(0) possibly_damaging(0.883) TCGA-G4-6586-01 3 142422760 142422762 CTC - PLS1 In_Frame_Del p.S475del 0.37 TCGA-G4-6586-01 3 145878789 145878789 A G PLOD2 5'UTR 0.23 TCGA-G4-6586-01 3 146322994 146322994 G T PLSCR5 Silent p.A2A 0.30 TCGA-G4-6586-01 3 14939575 14939575 G A FGD5 Silent p.R1013R 0.36 TCGA-G4-6586-01 3 150931861 150931861 A C P2RY14 Missense_Mutation p.S82A 0.29 tolerated(0.26) benign(0.257) TCGA-G4-6586-01 3 151085950 151085950 C T MED12L Missense_Mutation p.A1119V 0.39 tolerated(0.31) benign(0.066) TCGA-G4-6586-01 3 151150682 151150682 T - MED12L 3'UTR 0.16 TCGA-G4-6586-01 3 151171182 151171182 C A IGSF10 Missense_Mutation p.Q235H 0.39 deleterious(0.01) possibly_damaging(0.713) TCGA-G4-6586-01 3 15124035 15124035 G A ZFYVE20 Missense_Mutation p.R227C 0.40 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 3 152132805 152132805 C T MBNL1 Missense_Mutation p.R84C 0.39 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 3 152554762 152554762 T C P2RY1 3'UTR 0.34 TCGA-G4-6586-01 3 155655436 155655436 G A GMPS Missense_Mutation p.M679I 0.30 deleterious(0.02) possibly_damaging(0.556) TCGA-G4-6586-01 3 15719829 15719829 T C ANKRD28 Missense_Mutation p.H835R 0.39 tolerated(0.09) benign(0.303) TCGA-G4-6586-01 3 169381319 169381319 C T MECOM 5'Flank 0.37 TCGA-G4-6586-01 3 169487128 169487128 T C ACTRT3 Missense_Mutation p.R61G 0.40 deleterious(0.01) probably_damaging(0.993) TCGA-G4-6586-01 3 170013729 170013729 G A PRKCI Missense_Mutation p.R483H 0.30 tolerated(0.45) benign(0.365) TCGA-G4-6586-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.32 tolerated(0.11) possibly_damaging(0.529) TCGA-G4-6586-01 3 178984600 178984600 G A KCNMB3 5'UTR 0.45 TCGA-G4-6586-01 3 180693959 180693959 G A FXR1 Missense_Mutation p.G582D 0.30 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-G4-6586-01 3 183097180 183097180 G A MCF2L2 Silent p.G60G 0.27 TCGA-G4-6586-01 3 183911381 183911381 G T ABCF3 Silent p.R675R 0.08 TCGA-G4-6586-01 3 185191049 185191049 C - MAP3K13 Frame_Shift_Del p.P645Lfs*19 0.34 TCGA-G4-6586-01 3 185390421 185390421 C T IGF2BP2 Missense_Mutation p.A370T 0.35 deleterious(0.02) possibly_damaging(0.756) TCGA-G4-6586-01 3 192125831 192125831 G A FGF12 Missense_Mutation p.P61L 0.34 tolerated(0.23) benign(0.009) TCGA-G4-6586-01 3 194080421 194080421 G T LRRC15 Missense_Mutation p.P457H 0.36 deleterious(0.02) probably_damaging(0.983) TCGA-G4-6586-01 3 195489066 195489066 C T MUC4 Missense_Mutation p.A4802T 0.41 probably_damaging(0.945) TCGA-G4-6586-01 3 195513204 195513204 G A MUC4 Silent p.D1749D 0.20 TCGA-G4-6586-01 3 195597045 195597046 - G TNK2 Frame_Shift_Ins p.D558Rfs*40 0.20 TCGA-G4-6586-01 3 196050992 196050992 G A TM4SF19 Intron 0.56 TCGA-G4-6586-01 3 196544982 196544982 A - PAK2 Frame_Shift_Del p.S371Vfs*67 0.26 TCGA-G4-6586-01 3 197401358 197401358 G A KIAA0226 3'Flank 0.35 TCGA-G4-6586-01 3 25673942 25673943 - A TOP2B Frame_Shift_Ins p.K416* 0.31 TCGA-G4-6586-01 3 25777515 25777515 T G NGLY1 Missense_Mutation p.I377L 0.31 tolerated(0.35) benign(0.005) TCGA-G4-6586-01 3 2861248 2861248 C T CNTN4 Missense_Mutation p.P146L 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-G4-6586-01 3 37125283 37125283 T C LRRFIP2 Silent p.E374E 0.21 TCGA-G4-6586-01 3 38519422 38519422 G A ACVR2B Missense_Mutation p.E111K 0.36 tolerated(0.44) benign(0.009) TCGA-G4-6586-01 3 38601813 38601813 G A SCN5A Missense_Mutation p.A1357V 0.32 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 3 38743437 38743437 G A SCN10A Missense_Mutation p.A1517V 0.31 tolerated(1) benign(0.414) TCGA-G4-6586-01 3 38888666 38888666 T G SCN11A Missense_Mutation p.K1632T 0.35 deleterious(0) possibly_damaging(0.9) TCGA-G4-6586-01 3 39228310 39228310 G A XIRP1 Missense_Mutation p.P876L 0.28 deleterious(0.02) benign(0.029) TCGA-G4-6586-01 3 41266134 41266136 CTT - CTNNB1 In_Frame_Del p.S45del 0.29 TCGA-G4-6586-01 3 42787466 42787466 C T CCDC13 Silent p.S258S 0.36 TCGA-G4-6586-01 3 45077263 45077263 C T CLEC3B Silent p.I152I 0.34 TCGA-G4-6586-01 3 45160095 45160095 A G CDCP1 Missense_Mutation p.L34P 0.22 deleterious(0.02) benign(0.052) TCGA-G4-6586-01 3 46759251 46759251 C T PRSS50 Missense_Mutation p.A22T 0.52 tolerated(0.21) possibly_damaging(0.531) TCGA-G4-6586-01 3 47042614 47042614 A G NBEAL2 Missense_Mutation p.T1477A 0.35 deleterious(0.01) possibly_damaging(0.474) TCGA-G4-6586-01 3 47046765 47046765 C T NBEAL2 Missense_Mutation p.R2172C 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 3 47281490 47281490 T G KIF9 Intron 0.41 TCGA-G4-6586-01 3 47889390 47889390 G A DHX30 Missense_Mutation p.V744M 0.25 deleterious(0) probably_damaging(0.993) TCGA-G4-6586-01 3 48461243 48461243 G T PLXNB1 Missense_Mutation p.L818M 0.20 tolerated(0.23) benign(0.006) TCGA-G4-6586-01 3 48507956 48507956 C G TREX1 Missense_Mutation p.P23A 0.36 tolerated_low_confidence(0.64) unknown(0) TCGA-G4-6586-01 3 48510513 48510513 G A SHISA5 Missense_Mutation p.A239V 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.739) TCGA-G4-6586-01 3 48602252 48602252 G A COL7A1 Missense_Mutation p.R2928C 0.30 probably_damaging(0.994) TCGA-G4-6586-01 3 48604424 48604424 G - COL7A1 Frame_Shift_Del p.S2715Vfs*71 0.26 TCGA-G4-6586-01 3 48617468 48617468 C T COL7A1 Missense_Mutation p.R1707Q 0.14 unknown(0) TCGA-G4-6586-01 3 49200314 49200314 C T CCDC71 Missense_Mutation p.R443Q 0.41 tolerated(0.33) unknown(0) TCGA-G4-6586-01 3 49336039 49336039 A C USP4 Silent p.A514A 0.28 TCGA-G4-6586-01 3 49456807 49456807 G A AMT Silent p.G194G 0.37 TCGA-G4-6586-01 3 50332736 50332736 G A HYAL3 Missense_Mutation p.P100S 0.43 tolerated(1) benign(0.023) TCGA-G4-6586-01 3 50405271 50405271 G A CACNA2D2 Missense_Mutation p.R743C 0.33 deleterious(0.01) possibly_damaging(0.901) TCGA-G4-6586-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.30 TCGA-G4-6586-01 3 51430073 51430073 A G RBM15B Missense_Mutation p.N415D 0.28 deleterious(0.01) benign(0.091) TCGA-G4-6586-01 3 51752143 51752143 C T GRM2 3'UTR 0.23 TCGA-G4-6586-01 3 52555468 52555468 T - STAB1 Frame_Shift_Del p.F2001Lfs*111 0.31 TCGA-G4-6586-01 3 53260860 53260860 G T TKT Silent p.T544T 0.33 TCGA-G4-6586-01 3 53263321 53263321 G A TKT Silent p.C421C 0.39 TCGA-G4-6586-01 3 56468755 56468755 C T ERC2 Missense_Mutation p.R94H 0.35 deleterious(0) probably_damaging(0.985) TCGA-G4-6586-01 3 56468948 56468948 G A ERC2 Nonsense_Mutation p.R30* 0.39 TCGA-G4-6586-01 3 57287768 57287768 T C APPL1 Splice_Site p.X384_splice 0.33 TCGA-G4-6586-01 3 70014334 70014334 G A MITF Missense_Mutation p.G500R 0.33 deleterious(0.04) probably_damaging(0.974) TCGA-G4-6586-01 3 77629229 77629230 - T ROBO2 Frame_Shift_Ins p.G837Wfs*7 0.25 TCGA-G4-6586-01 3 8590372 8590372 C T LMCD1 Missense_Mutation p.S169L 0.34 deleterious(0.04) benign(0.117) TCGA-G4-6586-01 3 87294931 87294931 T G CHMP2B Missense_Mutation p.L65R 0.36 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 3 87302594 87302594 C T CHMP2B Silent p.D155D 0.37 TCGA-G4-6586-01 3 93646241 93646241 C T PROS1 Silent p.K29K 0.27 TCGA-G4-6586-01 3 96533581 96533581 C T EPHA6 Silent p.P38P 0.46 TCGA-G4-6586-01 3 96706498 96706498 C T EPHA6 Missense_Mutation p.R259C 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 3 96945172 96945172 C T EPHA6 Silent p.H393H 0.28 TCGA-G4-6586-01 3 9862406 9862406 C T TTLL3 Missense_Mutation p.R379C 0.32 tolerated(0.07) benign(0.03) TCGA-G4-6586-01 3 9877044 9877044 C T TTLL3 Silent p.A873A 0.38 TCGA-G4-6586-01 4 108999498 108999498 T - LEF1 Frame_Shift_Del p.R296Dfs*8 0.28 TCGA-G4-6586-01 4 113353674 113353674 T C ALPK1 Missense_Mutation p.W991R 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 4 113539615 113539615 A - C4orf21 Frame_Shift_Del p.L528Wfs*3 0.27 TCGA-G4-6586-01 4 115754793 115754793 T C NDST4 Missense_Mutation p.T789A 0.35 tolerated(0.08) benign(0.001) TCGA-G4-6586-01 4 123193548 123193549 - A KIAA1109 Frame_Shift_Ins p.M2814Nfs*11 0.18 TCGA-G4-6586-01 4 126239580 126239580 A G FAT4 Missense_Mutation p.M672V 0.35 benign(0.001) TCGA-G4-6586-01 4 126371139 126371139 A G FAT4 Missense_Mutation p.T2990A 0.34 probably_damaging(0.925) TCGA-G4-6586-01 4 13338999 13338999 G T HSP90AB2P RNA 0.39 TCGA-G4-6586-01 4 13485808 13485808 G - RAB28 5'UTR 0.33 TCGA-G4-6586-01 4 135121930 135121930 C T PABPC4L Missense_Mutation p.R140H 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6586-01 4 138442609 138442609 C T PCDH18 Silent p.E994E 0.20 TCGA-G4-6586-01 4 139100427 139100427 G A SLC7A11 Missense_Mutation p.A463V 0.32 tolerated(1) benign(0.187) TCGA-G4-6586-01 4 139157518 139157518 G C SLC7A11 Missense_Mutation p.P122R 0.30 deleterious(0.04) benign(0.018) TCGA-G4-6586-01 4 146041176 146041178 GAA - ABCE1 In_Frame_Del p.E341del 0.27 TCGA-G4-6586-01 4 146059018 146059018 C G OTUD4 Missense_Mutation p.R905T 0.36 tolerated(0.63) benign(0.004) TCGA-G4-6586-01 4 147561575 147561575 C T POU4F2 Missense_Mutation p.A282V 0.42 deleterious(0) probably_damaging(0.984) TCGA-G4-6586-01 4 15437500 15437500 C - C1QTNF7 Frame_Shift_Del p.P53Lfs*36 0.32 TCGA-G4-6586-01 4 154625769 154625769 G A TLR2 Silent p.V570V 0.33 TCGA-G4-6586-01 4 155312432 155312432 T C DCHS2 Missense_Mutation p.I6M 0.32 deleterious_low_confidence(0) benign(0.029) TCGA-G4-6586-01 4 155718976 155718976 A G RBM46 Silent p.P55P 0.36 TCGA-G4-6586-01 4 158257707 158257707 T - GRIA2 Frame_Shift_Del p.F552Lfs*8 0.29 TCGA-G4-6586-01 4 159611544 159611544 C T ETFDH Silent p.N217N 0.30 TCGA-G4-6586-01 4 160274736 160274736 C T RAPGEF2 Missense_Mutation p.R1236C 0.42 tolerated_low_confidence(0.12) benign(0.016) TCGA-G4-6586-01 4 1657223 1657223 G A FAM53A Missense_Mutation p.R122W 0.32 deleterious(0.03) probably_damaging(1) TCGA-G4-6586-01 4 170051194 170051194 C T SH3RF1 Intron 0.30 TCGA-G4-6586-01 4 170354746 170354746 G A NEK1 Silent p.C945C 0.27 TCGA-G4-6586-01 4 17625462 17625462 G A MED28 3'UTR 0.35 TCGA-G4-6586-01 4 183959387 183959387 C T FAM92A1P2 RNA 0.31 TCGA-G4-6586-01 4 185550539 185550539 G A CASP3 Nonsense_Mutation p.R241* 0.42 TCGA-G4-6586-01 4 189060961 189060961 C A TRIML1 Silent p.S83S 0.27 TCGA-G4-6586-01 4 20469448 20469448 T C SLIT2 Splice_Site p.X156_splice 0.30 TCGA-G4-6586-01 4 20599960 20599960 C T SLIT2 Missense_Mutation p.R1212W 0.39 deleterious(0) possibly_damaging(0.906) TCGA-G4-6586-01 4 26483399 26483399 G A CCKAR Missense_Mutation p.A383V 0.37 tolerated(0.07) possibly_damaging(0.694) TCGA-G4-6586-01 4 27019506 27019506 C T STIM2 Missense_Mutation p.P563S 0.37 tolerated_low_confidence(0.11) benign(0.034) TCGA-G4-6586-01 4 36160412 36160412 A C ARAP2 Missense_Mutation p.F898V 0.33 deleterious(0) probably_damaging(0.975) TCGA-G4-6586-01 4 37447379 37447379 T - KIAA1239 Frame_Shift_Del p.W1259Gfs*22 0.27 TCGA-G4-6586-01 4 41983978 41983978 A - DCAF4L1 Frame_Shift_Del p.K58Rfs*31 0.29 TCGA-G4-6586-01 4 4421831 4421831 C T STX18 Missense_Mutation p.R313H 0.33 deleterious(0) probably_damaging(0.981) TCGA-G4-6586-01 4 44705295 44705295 A G GNPDA2 Intron 0.29 TCGA-G4-6586-01 4 517505 517505 C T PIGG Silent p.D624D 0.31 TCGA-G4-6586-01 4 52951141 52951141 C T SPATA18 Silent p.P513P 0.42 TCGA-G4-6586-01 4 55524179 55524179 G A KIT 5'UTR 0.46 TCGA-G4-6586-01 4 55561756 55561756 G A KIT Missense_Mutation p.R49H 0.35 tolerated(0.11) benign(0.1) TCGA-G4-6586-01 4 55564477 55564477 G A KIT Missense_Mutation p.R122H 0.31 tolerated(0.13) benign(0.098) TCGA-G4-6586-01 4 5627523 5627523 G A EVC2 Missense_Mutation p.L667F 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 4 5830501 5830501 T - EVC 3'UTR 0.26 TCGA-G4-6586-01 4 5862761 5862761 G A CRMP1 Missense_Mutation p.T216M 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 4 62849103 62849103 T C LPHN3 Silent p.I938I 0.29 TCGA-G4-6586-01 4 680007 680007 C T MFSD7 Missense_Mutation p.A127T 0.24 tolerated(0.26) benign(0.061) TCGA-G4-6586-01 4 72319301 72319301 C T SLC4A4 Missense_Mutation p.S471L 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 4 73148837 73148837 T - ADAMTS3 3'UTR 0.24 TCGA-G4-6586-01 4 74442025 74442025 A G RASSF6 Missense_Mutation p.F346S 0.35 deleterious(0.01) possibly_damaging(0.805) TCGA-G4-6586-01 4 76797626 76797626 G A PPEF2 Silent p.S378S 0.41 TCGA-G4-6586-01 4 79366860 79366860 C T FRAS1 Silent p.T1950T 0.31 TCGA-G4-6586-01 4 79417972 79417972 C T FRAS1 Missense_Mutation p.T2991M 0.34 probably_damaging(0.934) TCGA-G4-6586-01 4 80828554 80828554 C T ANTXR2 3'UTR 0.35 TCGA-G4-6586-01 4 83348625 83348625 T - HNRNPDL Frame_Shift_Del p.K289Nfs*3 0.27 TCGA-G4-6586-01 4 83626510 83626510 A G SCD5 Missense_Mutation p.W97R 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 4 88047292 88047293 - C AFF1 Frame_Shift_Ins p.P875Afs*16 0.32 TCGA-G4-6586-01 4 88534399 88534399 G A DSPP Missense_Mutation p.R354H 0.37 benign(0.049) TCGA-G4-6586-01 4 89388242 89388242 G A HERC5 Missense_Mutation p.G315E 0.28 deleterious(0.04) possibly_damaging(0.798) TCGA-G4-6586-01 4 95199781 95199782 - C SMARCAD1 Frame_Shift_Ins p.K734Qfs*6 0.29 TCGA-G4-6586-01 4 9784920 9784920 C T DRD5 Missense_Mutation p.R423W 0.36 deleterious(0.02) benign(0.28) TCGA-G4-6586-01 4 9785349 9785349 G C DRD5 3'UTR 0.26 TCGA-G4-6586-01 4 9785421 9785421 G T DRD5 3'UTR 0.15 TCGA-G4-6586-01 5 107006343 107006343 C T EFNA5 5'UTR 0.33 TCGA-G4-6586-01 5 10973520 10973520 T C CTNND2 3'UTR 0.22 TCGA-G4-6586-01 5 110679719 110679719 A G CAMK4 Intron 0.37 TCGA-G4-6586-01 5 110784900 110784900 C T CAMK4 Silent p.C208C 0.30 TCGA-G4-6586-01 5 111594974 111594974 C A EPB41L4A Missense_Mutation p.K249N 0.41 deleterious(0.01) probably_damaging(1) TCGA-G4-6586-01 5 112157675 112157675 A G APC Silent p.A465A 0.28 TCGA-G4-6586-01 5 114462267 114462267 C T TRIM36 Missense_Mutation p.G707D 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 5 115628397 115628397 C T COMMD10 3'UTR 0.36 TCGA-G4-6586-01 5 118506012 118506012 A - DMXL1 Frame_Shift_Del p.S1844Vfs*9 0.09 TCGA-G4-6586-01 5 123983523 123983523 G A ZNF608 Missense_Mutation p.H852Y 0.33 tolerated(0.11) possibly_damaging(0.727) TCGA-G4-6586-01 5 131039898 131039898 G A FNIP1 Missense_Mutation p.R326W 0.34 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 5 135692453 135692453 C T TRPC7 Missense_Mutation p.R208Q 0.32 tolerated(0.36) benign(0.028) TCGA-G4-6586-01 5 139743320 139743320 G - SLC4A9 Frame_Shift_Del p.G388Afs*73 0.31 TCGA-G4-6586-01 5 139941372 139941372 G A APBB3 Intron 0.36 TCGA-G4-6586-01 5 140167991 140167991 G A PCDHA1 Missense_Mutation p.A706T 0.33 tolerated_low_confidence(0.13) benign(0.196) TCGA-G4-6586-01 5 140202966 140202966 G A PCDHA5 Missense_Mutation p.A536T 0.43 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G4-6586-01 5 140207973 140207973 C T PCDHA6 Silent p.S99S 0.33 TCGA-G4-6586-01 5 140209751 140209751 C A PCDHA6 Missense_Mutation p.A692E 0.38 deleterious_low_confidence(0.02) benign(0.107) TCGA-G4-6586-01 5 140215460 140215460 C T PCDHA7 Missense_Mutation p.R498W 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.598) TCGA-G4-6586-01 5 140235784 140235784 C A PCDHA10 Missense_Mutation p.L51M 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6586-01 5 140237500 140237500 G A PCDHA10 Missense_Mutation p.V623M 0.36 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-G4-6586-01 5 140262195 140262195 G T PCDHA13 Silent p.L114L 0.31 TCGA-G4-6586-01 5 140432537 140432537 A - PCDHB1 Frame_Shift_Del p.N496Tfs*12 0.30 TCGA-G4-6586-01 5 140573574 140573574 C T PCDHB10 Silent p.N483N 0.34 TCGA-G4-6586-01 5 140580578 140580579 AG - PCDHB11 Frame_Shift_Del p.S413Hfs*30 0.29 TCGA-G4-6586-01 5 140711538 140711538 T A PCDHGA1 Silent p.T429T 0.33 TCGA-G4-6586-01 5 140720770 140720770 C T PCDHGA2 Silent p.D744D 0.37 TCGA-G4-6586-01 5 140769366 140769366 C T PCDHGB4 Missense_Mutation p.R639C 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6586-01 5 140789314 140789314 C T PCDHGB6 Silent p.F515F 0.25 TCGA-G4-6586-01 5 140792805 140792805 C T PCDHGA10 Silent p.C21C 0.31 TCGA-G4-6586-01 5 141312891 141312891 C T KIAA0141 Silent p.R274R 0.28 TCGA-G4-6586-01 5 141312906 141312906 G A KIAA0141 Silent p.A279A 0.30 TCGA-G4-6586-01 5 145506051 145506051 G A LARS Missense_Mutation p.P980S 0.35 tolerated(0.25) benign(0.002) TCGA-G4-6586-01 5 145834675 145834675 T C TCERG1 Missense_Mutation p.V39A 0.39 deleterious_low_confidence(0.05) benign(0.153) TCGA-G4-6586-01 5 148747692 148747692 G A PCYOX1L Silent p.P320P 0.33 TCGA-G4-6586-01 5 149581992 149581992 C T SLC6A7 Missense_Mutation p.T314M 0.24 deleterious(0) possibly_damaging(0.714) TCGA-G4-6586-01 5 150051174 150051174 G A MYOZ3 Missense_Mutation p.A78T 0.35 tolerated(0.38) benign(0.005) TCGA-G4-6586-01 5 150847346 150847346 C T SLC36A1 Nonsense_Mutation p.R195* 0.33 TCGA-G4-6586-01 5 154252121 154252121 T C CNOT8 Silent p.A213A 0.31 TCGA-G4-6586-01 5 154275815 154275815 T C GEMIN5 Missense_Mutation p.Y1145C 0.38 tolerated(0.11) possibly_damaging(0.886) TCGA-G4-6586-01 5 156816258 156816258 C T CYFIP2 Missense_Mutation p.S1064F 0.08 deleterious(0) probably_damaging(0.968) TCGA-G4-6586-01 5 156920175 156920175 A G ADAM19 Missense_Mutation p.C572R 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 5 157158624 157158624 G A THG1L Missense_Mutation p.G59D 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 5 159520656 159520656 T - PWWP2A Frame_Shift_Del p.K334Rfs*25 0.29 TCGA-G4-6586-01 5 159820773 159820773 T - C5orf54 Frame_Shift_Del p.V576Ffs*28 0.30 TCGA-G4-6586-01 5 168112800 168112800 G A SLIT3 Silent p.F1149F 0.12 TCGA-G4-6586-01 5 168112909 168112909 G - SLIT3 Frame_Shift_Del p.P1113Hfs*108 0.36 TCGA-G4-6586-01 5 169724590 169724590 C T LCP2 Missense_Mutation p.R9H 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-G4-6586-01 5 171517246 171517246 T A STK10 Nonsense_Mutation p.R559* 0.27 TCGA-G4-6586-01 5 177683373 177683373 T C COL23A1 Missense_Mutation p.D288G 0.27 tolerated(0.16) possibly_damaging(0.577) TCGA-G4-6586-01 5 179146762 179146762 C T CANX Silent p.D335D 0.38 TCGA-G4-6586-01 5 179225055 179225055 T - MGAT4B Frame_Shift_Del p.K561Rfs*141 0.27 TCGA-G4-6586-01 5 179290809 179290809 C - TBC1D9B Frame_Shift_Del p.G1131Afs*78 0.08 TCGA-G4-6586-01 5 179293127 179293127 C T TBC1D9B Intron 0.50 TCGA-G4-6586-01 5 180048759 180048759 C T FLT4 Silent p.A601A 0.31 TCGA-G4-6586-01 5 180687825 180687825 G A TRIM52 5'UTR 0.33 TCGA-G4-6586-01 5 21783478 21783478 G A CDH12 Missense_Mutation p.A461V 0.33 deleterious(0) probably_damaging(0.969) TCGA-G4-6586-01 5 31317953 31317953 G A CDH6 Missense_Mutation p.A602T 0.44 tolerated(0.2) probably_damaging(0.984) TCGA-G4-6586-01 5 34954774 34954774 C T DNAJC21 Silent p.S562S 0.32 TCGA-G4-6586-01 5 3599797 3599797 C T IRX1 Silent p.D245D 0.33 TCGA-G4-6586-01 5 36035807 36035807 T G UGT3A2 Missense_Mutation p.E522A 0.34 deleterious(0.02) benign(0.071) TCGA-G4-6586-01 5 37006464 37006464 C T NIPBL Silent p.N1287N 0.34 TCGA-G4-6586-01 5 44388487 44388487 C T FGF10 Missense_Mutation p.G100R 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 5 56170920 56170920 C T MAP3K1 Missense_Mutation p.A583V 0.37 deleterious(0) probably_damaging(0.957) TCGA-G4-6586-01 5 61668359 61668359 T - KIF2A Frame_Shift_Del p.S582Lfs*10 0.25 TCGA-G4-6586-01 5 61697913 61697913 C T DIMT1 Missense_Mutation p.G64R 0.35 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 5 61847115 61847115 T - IPO11 Frame_Shift_Del p.S847Lfs*22 0.33 TCGA-G4-6586-01 5 6312783 6312783 G A CTD-2324F15.2 RNA 0.25 TCGA-G4-6586-01 5 63257359 63257359 A G HTR1A Missense_Mutation p.L63S 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 5 64824794 64824794 A G CENPK Missense_Mutation p.V141A 0.31 tolerated(0.75) benign(0.009) TCGA-G4-6586-01 5 66084566 66084566 G A MAST4 Missense_Mutation p.V196M 0.39 possibly_damaging(0.886) TCGA-G4-6586-01 5 71756473 71756473 G A ZNF366 Missense_Mutation p.T284M 0.30 tolerated(0.11) possibly_damaging(0.687) TCGA-G4-6586-01 5 73932154 73932154 C T ENC1 Missense_Mutation p.G53R 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6586-01 5 74641471 74641471 T C HMGCR Silent p.S146S 0.38 TCGA-G4-6586-01 5 78181573 78181573 C T ARSB Missense_Mutation p.V326I 0.42 tolerated(0.81) benign(0.005) TCGA-G4-6586-01 5 79372860 79372860 A G THBS4 Missense_Mutation p.E692G 0.21 tolerated(0.15) possibly_damaging(0.85) TCGA-G4-6586-01 5 79734478 79734478 A G ZFYVE16 Silent p.R658R 0.34 TCGA-G4-6586-01 5 80497209 80497209 C T RASGRF2 Nonsense_Mutation p.R952* 0.30 TCGA-G4-6586-01 5 80555016 80555016 G A CKMT2 Silent p.S319S 0.34 TCGA-G4-6586-01 5 86629108 86629108 C T RASA1 Nonsense_Mutation p.R285* 0.30 TCGA-G4-6586-01 5 89701580 89701581 - T CETN3 Frame_Shift_Ins p.A64Sfs*2 0.36 TCGA-G4-6586-01 5 89939692 89939692 G A GPR98 Missense_Mutation p.V876I 0.30 benign(0.417) TCGA-G4-6586-01 5 9237951 9237951 C T SEMA5A Missense_Mutation p.G108S 0.29 deleterious(0.03) probably_damaging(1) TCGA-G4-6586-01 5 96121528 96121528 C T ERAP1 Missense_Mutation p.R636Q 0.42 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 6 100897546 100897546 T A SIM1 Missense_Mutation p.E126D 0.27 tolerated(0.37) possibly_damaging(0.906) TCGA-G4-6586-01 6 102124620 102124620 A T GRIK2 Nonsense_Mutation p.K222* 0.21 TCGA-G4-6586-01 6 10586946 10586946 T - GCNT2 Intron 0.25 TCGA-G4-6586-01 6 10687356 10687356 C T C6orf52 Missense_Mutation p.S38N 0.34 tolerated(0.32) benign(0.001) TCGA-G4-6586-01 6 111701354 111701354 C - REV3L Frame_Shift_Del p.E429Kfs*40 0.26 TCGA-G4-6586-01 6 11213542 11213542 C - NEDD9 Frame_Shift_Del p.G144Efs*11 0.31 TCGA-G4-6586-01 6 117683847 117683847 G C ROS1 Missense_Mutation p.D1100E 0.42 tolerated(0.63) benign(0.016) TCGA-G4-6586-01 6 126080810 126080810 C T HEY2 Silent p.N292N 0.30 TCGA-G4-6586-01 6 129636915 129636915 C A LAMA2 Silent p.A1248A 0.36 TCGA-G4-6586-01 6 130761753 130761753 T - TMEM200A Frame_Shift_Del p.I66Ffs*2 0.24 TCGA-G4-6586-01 6 133073823 133073823 G A VNN2 Silent p.T201T 0.29 TCGA-G4-6586-01 6 134210800 134210800 C G TCF21 Missense_Mutation p.R89G 0.37 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 6 138199945 138199945 G - TNFAIP3 Frame_Shift_Del p.P457Lfs*20 0.35 TCGA-G4-6586-01 6 138584111 138584111 C T KIAA1244 Silent p.N497N 0.27 TCGA-G4-6586-01 6 139495585 139495585 G A HECA Missense_Mutation p.C459Y 0.37 deleterious(0) probably_damaging(0.996) TCGA-G4-6586-01 6 142539806 142539806 T - VTA1 3'UTR 0.30 TCGA-G4-6586-01 6 147012391 147012391 A - ADGB Frame_Shift_Del p.K486Rfs*5 0.30 TCGA-G4-6586-01 6 150238199 150238199 G A RAET1G Missense_Mutation p.A285V 0.30 deleterious_low_confidence(0.01) benign(0.015) TCGA-G4-6586-01 6 150244178 150244178 C T RAET1G 5'UTR 0.41 TCGA-G4-6586-01 6 151152984 151152984 G A PLEKHG1 Missense_Mutation p.A913T 0.37 tolerated(0.38) benign(0.002) TCGA-G4-6586-01 6 152590364 152590364 C T SYNE1 Missense_Mutation p.G6211S 0.31 benign(0.003) TCGA-G4-6586-01 6 152644655 152644655 G A SYNE1 Missense_Mutation p.P5292L 0.29 benign(0.017) TCGA-G4-6586-01 6 157099202 157099202 G A ARID1B Missense_Mutation p.A47T 0.33 unknown(0) TCGA-G4-6586-01 6 160977074 160977075 - G LPA Frame_Shift_Ins p.E1653Rfs*6 0.34 TCGA-G4-6586-01 6 161027563 161027563 C T LPA Missense_Mutation p.V911I 0.40 tolerated(0.55) probably_damaging(0.952) TCGA-G4-6586-01 6 16295384 16295384 G A GMPR Silent p.R335R 0.50 TCGA-G4-6586-01 6 163510305 163510305 C T PACRG Nonsense_Mutation p.R160* 0.32 TCGA-G4-6586-01 6 165832252 165832252 T - PDE10A Frame_Shift_Del p.N290Tfs*3 0.31 TCGA-G4-6586-01 6 168188079 168188079 G A C6orf123 3'UTR 0.55 TCGA-G4-6586-01 6 170115888 170115888 A G PHF10 Silent p.A203A 0.35 TCGA-G4-6586-01 6 170176089 170176089 C T ERMARD Missense_Mutation p.T483M 0.30 tolerated(0.44) benign(0.001) TCGA-G4-6586-01 6 17637996 17637996 C T NUP153 Missense_Mutation p.A618T 0.26 tolerated(1) benign(0.004) TCGA-G4-6586-01 6 18222307 18222307 A - KDM1B 3'UTR 0.31 TCGA-G4-6586-01 6 21598293 21598293 T - SOX4 3'UTR 0.28 TCGA-G4-6586-01 6 26124911 26124911 C - HIST1H2AC Intron 0.26 TCGA-G4-6586-01 6 26188950 26188950 A - HIST1H4D 3'UTR 0.23 TCGA-G4-6586-01 6 27279773 27279773 C A POM121L2 Silent p.R59R 0.21 TCGA-G4-6586-01 6 27841257 27841257 A G HIST1H4L Missense_Mutation p.L11P 0.30 deleterious_low_confidence(0) unknown(0) TCGA-G4-6586-01 6 30633485 30633485 C T DHX16 Missense_Mutation p.R231H 0.26 deleterious(0) unknown(0) TCGA-G4-6586-01 6 30653849 30653849 G T PPP1R18 5'UTR 0.50 TCGA-G4-6586-01 6 31601226 31601226 C T PRRC2A Missense_Mutation p.R1464C 0.29 unknown(0) TCGA-G4-6586-01 6 31728554 31728554 C T MSH5 Nonsense_Mutation p.R634* 0.40 TCGA-G4-6586-01 6 31868581 31868581 G A ZBTB12 Missense_Mutation p.P168S 0.42 tolerated(0.17) benign(0) TCGA-G4-6586-01 6 31902098 31902098 T C C2 Intron 0.36 TCGA-G4-6586-01 6 31921506 31921506 C T NELFE Missense_Mutation p.A349T 0.30 deleterious(0) unknown(0) TCGA-G4-6586-01 6 32815707 32815707 G T TAP1 Missense_Mutation p.L637M 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 6 33171340 33171340 C T SLC39A7 Missense_Mutation p.T387I 0.37 deleterious(0) probably_damaging(0.997) TCGA-G4-6586-01 6 33180076 33180076 C T RING1 Missense_Mutation p.T374M 0.35 tolerated(0.09) unknown(0) TCGA-G4-6586-01 6 33287213 33287213 G - DAXX Frame_Shift_Del p.C629Afs*16 0.31 TCGA-G4-6586-01 6 34499507 34499507 G - PACSIN1 Frame_Shift_Del p.V390Cfs*97 0.26 TCGA-G4-6586-01 6 36104506 36104506 C - MAPK13 Frame_Shift_Del p.E192Rfs*2 0.31 TCGA-G4-6586-01 6 36168861 36168861 G A BRPF3 Nonsense_Mutation p.W254* 0.33 TCGA-G4-6586-01 6 36298018 36298018 G A C6orf222 Silent p.H150H 0.32 TCGA-G4-6586-01 6 37426576 37426576 A G CMTR1 Silent p.E322E 0.19 TCGA-G4-6586-01 6 38142900 38142900 T - BTBD9 Frame_Shift_Del p.N567Ifs*181 0.27 TCGA-G4-6586-01 6 4032373 4032373 G A PRPF4B Missense_Mutation p.V208I 0.07 tolerated_low_confidence(0.42) benign(0.06) TCGA-G4-6586-01 6 4073675 4073675 T - FAM217A Frame_Shift_Del p.S76Vfs*23 0.25 TCGA-G4-6586-01 6 41129291 41129291 A G TREM2 Missense_Mutation p.V34A 0.38 deleterious(0) possibly_damaging(0.906) TCGA-G4-6586-01 6 41774562 41774562 C T USP49 Missense_Mutation p.A54T 0.31 deleterious(0) possibly_damaging(0.503) TCGA-G4-6586-01 6 42195954 42195954 C T TRERF1 3'UTR 0.42 TCGA-G4-6586-01 6 42984896 42984896 G - KLHDC3 5'UTR 0.39 TCGA-G4-6586-01 6 43488150 43488150 T C POLR1C Missense_Mutation p.C214R 0.39 deleterious(0) probably_damaging(0.986) TCGA-G4-6586-01 6 43488392 43488392 G A POLR1C Missense_Mutation p.A229T 0.32 deleterious(0.02) possibly_damaging(0.896) TCGA-G4-6586-01 6 43589787 43589787 C T GTPBP2 Missense_Mutation p.V529M 0.31 deleterious(0.01) probably_damaging(0.909) TCGA-G4-6586-01 6 46111334 46111334 G A ENPP4 Missense_Mutation p.R440Q 0.36 deleterious(0.03) probably_damaging(0.971) TCGA-G4-6586-01 6 46644228 46644228 A C SLC25A27 3'UTR 0.34 TCGA-G4-6586-01 6 47251940 47251940 G A TNFRSF21 Missense_Mutation p.T326M 0.34 tolerated(0.19) benign(0.066) TCGA-G4-6586-01 6 49583359 49583359 G A RHAG Silent p.Y206Y 0.32 TCGA-G4-6586-01 6 49666143 49666143 C T CRISP2 Missense_Mutation p.E117K 0.39 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 6 51612934 51612934 A G PKHD1 Silent p.H3160H 0.36 TCGA-G4-6586-01 6 55223887 55223887 A G GFRAL Silent p.E301E 0.35 TCGA-G4-6586-01 6 62604734 62604734 G A KHDRBS2 Missense_Mutation p.R206C 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6586-01 6 70866077 70866077 A G COL19A1 Missense_Mutation p.E713G 0.17 tolerated(0.11) benign(0.096) TCGA-G4-6586-01 6 72806744 72806744 C T RIMS1 Missense_Mutation p.A113V 0.44 deleterious(0) probably_damaging(0.986) TCGA-G4-6586-01 6 73904449 73904449 C T KCNQ5 Missense_Mutation p.A723V 0.31 deleterious(0.02) benign(0.185) TCGA-G4-6586-01 6 82459875 82459875 C T FAM46A Missense_Mutation p.R289Q 0.41 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 6 83076536 83076536 T - TPBG 3'UTR 0.28 TCGA-G4-6586-01 6 83810578 83810578 G A DOPEY1 Missense_Mutation p.R98Q 0.37 tolerated(0.13) probably_damaging(0.999) TCGA-G4-6586-01 6 83819938 83819938 C T DOPEY1 Missense_Mutation p.R196C 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 6 83830486 83830486 A G DOPEY1 Missense_Mutation p.S359G 0.31 deleterious(0.01) benign(0.09) TCGA-G4-6586-01 6 90371243 90371243 G A MDN1 Missense_Mutation p.P4874S 0.30 benign(0.035) TCGA-G4-6586-01 6 96654708 96654708 G A FUT9 3'UTR 0.36 TCGA-G4-6586-01 6 96657758 96657758 C - FUT9 3'UTR 0.28 TCGA-G4-6586-01 7 100075075 100075075 G - TSC22D4 Frame_Shift_Del p.P196Qfs*21 0.32 TCGA-G4-6586-01 7 100150999 100150999 C A AGFG2 Missense_Mutation p.P154H 0.20 deleterious(0.02) possibly_damaging(0.593) TCGA-G4-6586-01 7 100281714 100281714 C T GIGYF1 Silent p.P599P 0.38 TCGA-G4-6586-01 7 100679978 100679978 G A MUC17 Missense_Mutation p.V1761I 0.36 possibly_damaging(0.57) TCGA-G4-6586-01 7 101845369 101845369 C - CUX1 Frame_Shift_Del p.E944Sfs*59 0.18 TCGA-G4-6586-01 7 103018178 103018179 - G SLC26A5 Frame_Shift_Ins p.I619Nfs*9 0.31 TCGA-G4-6586-01 7 104748029 104748029 C A KMT2E Missense_Mutation p.P1042H 0.35 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-G4-6586-01 7 105187677 105187677 C - RINT1 Frame_Shift_Del p.P247Lfs*8 0.27 TCGA-G4-6586-01 7 106850992 106850992 T - COG5 Frame_Shift_Del p.K816Rfs*18 0.37 TCGA-G4-6586-01 7 107408329 107408329 C T SLC26A3 Missense_Mutation p.R696Q 0.36 tolerated(0.23) benign(0.119) TCGA-G4-6586-01 7 111368369 111368369 C T DOCK4 Silent p.P1954P 0.46 TCGA-G4-6586-01 7 116165017 116165017 T - CAV1 5'UTR 0.45 TCGA-G4-6586-01 7 117398014 117398014 C T CTTNBP2 Silent p.P1061P 0.51 TCGA-G4-6586-01 7 12420185 12420185 A C VWDE Missense_Mutation p.L239R 0.34 deleterious(0) probably_damaging(0.99) TCGA-G4-6586-01 7 129474885 129474885 G A UBE2H Silent p.Y148Y 0.30 TCGA-G4-6586-01 7 135106961 135106961 C T CNOT4 Missense_Mutation p.V106I 0.32 tolerated(0.16) possibly_damaging(0.509) TCGA-G4-6586-01 7 137773402 137773402 G A AKR1D1 Missense_Mutation p.R50Q 0.36 deleterious(0.03) possibly_damaging(0.626) TCGA-G4-6586-01 7 137790113 137790113 C T AKR1D1 Missense_Mutation p.R173C 0.31 tolerated(0.06) probably_damaging(0.95) TCGA-G4-6586-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-G4-6586-01 7 141414156 141414156 A - WEE2 Frame_Shift_Del p.K165Nfs*12 0.35 TCGA-G4-6586-01 7 143018517 143018517 G A CLCN1 Missense_Mutation p.V165I 0.28 tolerated(0.09) probably_damaging(0.929) TCGA-G4-6586-01 7 149489566 149489566 G A SSPO RNA 0.36 TCGA-G4-6586-01 7 149508059 149508059 C - SSPO RNA 0.20 TCGA-G4-6586-01 7 150270276 150270276 G A GIMAP4 3'UTR 0.36 TCGA-G4-6586-01 7 150774690 150774690 C A FASTK Intron 0.14 TCGA-G4-6586-01 7 150935230 150935230 C T CHPF2 Silent p.T594T 0.30 TCGA-G4-6586-01 7 1518490 1518490 G A INTS1 Missense_Mutation p.S1454L 0.26 deleterious(0.03) benign(0.148) TCGA-G4-6586-01 7 151921131 151921131 C A KMT2C Missense_Mutation p.D1098Y 0.32 probably_damaging(0.927) TCGA-G4-6586-01 7 152480291 152480291 G A ACTR3B Missense_Mutation p.A22T 0.21 deleterious(0) probably_damaging(0.993) TCGA-G4-6586-01 7 154598758 154598758 G T DPP6 Missense_Mutation p.E534D 0.25 tolerated(0.53) benign(0.001) TCGA-G4-6586-01 7 157000171 157000172 TT - UBE3C Frame_Shift_Del p.F500Lfs*4 0.32 TCGA-G4-6586-01 7 18706029 18706035 CAGTGGA - HDAC9 Frame_Shift_Del p.D556Mfs*46 0.36 TCGA-G4-6586-01 7 23165570 23165570 T - KLHL7 Intron 0.20 TCGA-G4-6586-01 7 26245989 26245989 A - CBX3 Frame_Shift_Del p.M11Wfs*26 0.31 TCGA-G4-6586-01 7 2978409 2978409 G A CARD11 Silent p.H307H 0.38 TCGA-G4-6586-01 7 31682899 31682899 T G CCDC129 Missense_Mutation p.S665A 0.38 tolerated(0.34) benign(0.047) TCGA-G4-6586-01 7 33054309 33054309 C A NT5C3A 3'UTR 0.31 TCGA-G4-6586-01 7 33423334 33423334 C T BBS9 Missense_Mutation p.L616F 0.29 tolerated(0.07) benign(0.044) TCGA-G4-6586-01 7 35942695 35942695 C T SEPT7 Missense_Mutation p.R383C 0.33 deleterious(0.03) benign(0.239) TCGA-G4-6586-01 7 37904014 37904015 - A NME8 Frame_Shift_Ins p.R175Kfs*15 0.27 TCGA-G4-6586-01 7 38574603 38574603 T C AMPH Silent p.Q26Q 0.32 TCGA-G4-6586-01 7 4002325 4002325 C T SDK1 Missense_Mutation p.A424V 0.31 deleterious(0) possibly_damaging(0.789) TCGA-G4-6586-01 7 4008919 4008919 G A SDK1 Missense_Mutation p.R526Q 0.31 tolerated(1) benign(0.003) TCGA-G4-6586-01 7 42187873 42187873 T C GLI3 Missense_Mutation p.T107A 0.21 tolerated_low_confidence(0.25) benign(0.009) TCGA-G4-6586-01 7 43484586 43484586 G A HECW1 Silent p.T605T 0.27 TCGA-G4-6586-01 7 44144435 44144435 G A AEBP1 Silent p.P57P 0.67 TCGA-G4-6586-01 7 44151566 44151566 C T AEBP1 Missense_Mutation p.R652C 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 7 44556318 44556318 A C NPC1L1 Missense_Mutation p.L1195R 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 7 44733561 44733561 C T OGDH Silent p.A491A 0.36 TCGA-G4-6586-01 7 48285494 48285494 G A ABCA13 Missense_Mutation p.R509H 0.36 benign(0) TCGA-G4-6586-01 7 48287855 48287855 T C ABCA13 Missense_Mutation p.V560A 0.33 benign(0.011) TCGA-G4-6586-01 7 53103722 53103722 A G POM121L12 Missense_Mutation p.M120V 0.38 tolerated(0.24) benign(0.14) TCGA-G4-6586-01 7 5402342 5402342 C T TNRC18 Missense_Mutation p.R1445Q 0.30 benign(0.187) TCGA-G4-6586-01 7 5427456 5427456 C T TNRC18 Missense_Mutation p.E667K 0.20 possibly_damaging(0.879) TCGA-G4-6586-01 7 54610383 54610383 G A VSTM2A 5'UTR 0.32 TCGA-G4-6586-01 7 6502455 6502455 T - KDELR2 3'UTR 0.24 TCGA-G4-6586-01 7 6662392 6662392 G A ZNF853 Silent p.T590T 0.50 TCGA-G4-6586-01 7 73456964 73456964 G A ELN Missense_Mutation p.V85I 0.28 unknown(0) TCGA-G4-6586-01 7 75687295 75687295 C T MDH2 Missense_Mutation p.R110W 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 7 77214878 77214878 C T PTPN12 Nonsense_Mutation p.R134* 0.32 TCGA-G4-6586-01 7 77764396 77764396 G A MAGI2 Silent p.I991I 0.36 TCGA-G4-6586-01 7 84636257 84636257 C T SEMA3D Missense_Mutation p.S590N 0.33 tolerated(0.41) benign(0.001) TCGA-G4-6586-01 7 87190668 87190668 C T ABCB1 Silent p.A246A 0.30 TCGA-G4-6586-01 7 92732819 92732819 A C SAMD9 Silent p.A864A 0.08 TCGA-G4-6586-01 7 92765077 92765077 G A SAMD9L Missense_Mutation p.R70C 0.34 deleterious(0.03) benign(0.052) TCGA-G4-6586-01 7 94055159 94055159 G A COL1A2 Missense_Mutation p.R978H 0.32 unknown(0) TCGA-G4-6586-01 7 97933623 97933623 G - BAIAP2L1 Frame_Shift_Del p.P436Hfs*60 0.33 TCGA-G4-6586-01 7 98530881 98530881 C - TRRAP Frame_Shift_Del p.P1292Lfs*17 0.39 TCGA-G4-6586-01 7 98628338 98628338 G T SMURF1 Intron 0.30 TCGA-G4-6586-01 7 99668793 99668793 G A ZNF3 Silent p.T438T 0.38 TCGA-G4-6586-01 7 99669690 99669690 C T ZNF3 Silent p.P139P 0.28 TCGA-G4-6586-01 7 99669785 99669785 A C ZNF3 Missense_Mutation p.S108A 0.42 tolerated(0.43) benign(0.001) TCGA-G4-6586-01 7 99709805 99709805 A G TAF6 Silent p.L253L 0.12 TCGA-G4-6586-01 7 99795754 99795754 A G STAG3 Silent p.A403A 0.34 TCGA-G4-6586-01 8 100899842 100899842 C T COX6C Missense_Mutation p.R40H 0.33 tolerated(0.14) benign(0.141) TCGA-G4-6586-01 8 101014478 101014478 T - RGS22 Frame_Shift_Del p.K914Nfs*18 0.24 TCGA-G4-6586-01 8 101146441 101146441 A G FBXO43 Missense_Mutation p.L609P 0.37 tolerated(0.2) benign(0.005) TCGA-G4-6586-01 8 105509429 105509429 A - LRP12 Frame_Shift_Del p.C451Afs*37 0.26 TCGA-G4-6586-01 8 107371840 107371840 C T OXR1 5'UTR 0.34 TCGA-G4-6586-01 8 110457126 110457126 C T PKHD1L1 Silent p.S1676S 0.25 TCGA-G4-6586-01 8 110984672 110984672 C T KCNV1 Missense_Mutation p.R269H 0.28 tolerated(0.07) benign(0.005) TCGA-G4-6586-01 8 113301684 113301684 A G CSMD3 Missense_Mutation p.S3020P 0.33 deleterious(0) possibly_damaging(0.529) TCGA-G4-6586-01 8 113318360 113318360 C A CSMD3 Missense_Mutation p.L2649F 0.32 deleterious(0.02) probably_damaging(0.962) TCGA-G4-6586-01 8 11702579 11702579 A G CTSB 3'UTR 0.50 TCGA-G4-6586-01 8 120629796 120629796 G A ENPP2 Missense_Mutation p.R163C 0.36 deleterious(0.03) probably_damaging(0.919) TCGA-G4-6586-01 8 122641376 122641376 G A HAS2 Nonsense_Mutation p.R69* 0.31 TCGA-G4-6586-01 8 125463449 125463449 C A TRMT12 Missense_Mutation p.P94H 0.21 deleterious(0.01) possibly_damaging(0.664) TCGA-G4-6586-01 8 125603409 125603409 C A MTSS1 Missense_Mutation p.K92N 0.35 deleterious(0) probably_damaging(0.997) TCGA-G4-6586-01 8 12883060 12883060 C A KIAA1456 3'UTR 0.30 TCGA-G4-6586-01 8 134260981 134260981 C T NDRG1 Silent p.P244P 0.44 TCGA-G4-6586-01 8 139209857 139209857 C T FAM135B Missense_Mutation p.R242Q 0.39 tolerated(0.11) possibly_damaging(0.769) TCGA-G4-6586-01 8 142200408 142200408 G A DENND3 Missense_Mutation p.G1011S 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6586-01 8 142221481 142221481 C T SLC45A4 3'UTR 0.35 TCGA-G4-6586-01 8 142445020 142445020 G T PTP4A3 3'Flank 0.30 TCGA-G4-6586-01 8 144358772 144358774 TCA - GLI4 In_Frame_Del p.I311del 0.46 TCGA-G4-6586-01 8 144772272 144772272 T G ZNF707 5'UTR 0.42 TCGA-G4-6586-01 8 144810225 144810225 G A FAM83H Missense_Mutation p.P469L 0.44 deleterious(0.01) possibly_damaging(0.811) TCGA-G4-6586-01 8 144990749 144990749 G A PLEC Missense_Mutation p.R4551C 0.33 probably_damaging(0.995) TCGA-G4-6586-01 8 145150875 145150876 - C CYC1 Frame_Shift_Ins p.S93Qfs*26 0.28 TCGA-G4-6586-01 8 145535050 145535050 T C HSF1 Missense_Mutation p.L203P 0.40 tolerated(0.11) benign(0.019) TCGA-G4-6586-01 8 145741842 145741842 T C RECQL4 Missense_Mutation p.I221V 0.30 tolerated(0.45) benign(0.002) TCGA-G4-6586-01 8 145773375 145773375 G - ARHGAP39 Frame_Shift_Del p.S366Rfs*18 0.47 TCGA-G4-6586-01 8 17883121 17883121 G A PCM1 Missense_Mutation p.M2001I 0.45 tolerated(0.25) benign(0.047) TCGA-G4-6586-01 8 19263296 19263296 T - CSGALNACT1 Frame_Shift_Del p.T532Hfs*43 0.39 TCGA-G4-6586-01 8 20110857 20110857 C T LZTS1 Silent p.P195P 0.28 TCGA-G4-6586-01 8 2048834 2048834 G A MYOM2 Missense_Mutation p.R870H 0.50 tolerated(0.1) benign(0.103) TCGA-G4-6586-01 8 21938332 21938332 G - DMTN Frame_Shift_Del p.R327Gfs*22 0.35 TCGA-G4-6586-01 8 22020615 22020615 C T SFTPC Missense_Mutation p.A75V 0.29 deleterious(0) possibly_damaging(0.772) TCGA-G4-6586-01 8 22162369 22162369 T C PIWIL2 Silent p.D481D 0.33 TCGA-G4-6586-01 8 23198554 23198554 C T LOXL2 Missense_Mutation p.G232S 0.36 deleterious(0) probably_damaging(0.997) TCGA-G4-6586-01 8 25899634 25899634 C T EBF2 Missense_Mutation p.V89M 0.41 deleterious(0.02) probably_damaging(0.964) TCGA-G4-6586-01 8 26510812 26510812 C T DPYSL2 Missense_Mutation p.T509M 0.26 tolerated(0.1) benign(0.097) TCGA-G4-6586-01 8 30704796 30704796 G A TEX15 Missense_Mutation p.H580Y 0.43 tolerated(0.15) probably_damaging(0.924) TCGA-G4-6586-01 8 442304 442304 C T TDRP Intron 0.47 TCGA-G4-6586-01 8 52321678 52321678 A G PXDNL Missense_Mutation p.C836R 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 8 53045634 53045634 T - ST18 Frame_Shift_Del p.E810Kfs*5 0.25 TCGA-G4-6586-01 8 53852987 53852987 G A NPBWR1 Missense_Mutation p.A174T 0.33 tolerated(0.91) benign(0.013) TCGA-G4-6586-01 8 57026163 57026163 T G MOS Missense_Mutation p.T127P 0.29 deleterious(0.04) benign(0.17) TCGA-G4-6586-01 8 57079854 57079854 T C PLAG1 Missense_Mutation p.T151A 0.20 deleterious(0) probably_damaging(0.973) TCGA-G4-6586-01 8 57905769 57905769 G T IMPAD1 Missense_Mutation p.P126T 0.29 deleterious(0) probably_damaging(0.997) TCGA-G4-6586-01 8 59410875 59410876 - A CYP7A1 Frame_Shift_Ins p.I79Hfs*9 0.31 TCGA-G4-6586-01 8 6612658 6612658 A C AGPAT5 Silent p.R278R 0.44 TCGA-G4-6586-01 8 66617139 66617139 G A MTFR1 Silent p.Q164Q 0.37 TCGA-G4-6586-01 8 68138292 68138292 C T ARFGEF1 Missense_Mutation p.R1348H 0.33 deleterious(0) probably_damaging(0.978) TCGA-G4-6586-01 8 68200194 68200194 A G ARFGEF1 Silent p.V341V 0.27 TCGA-G4-6586-01 8 69129899 69129899 C T PREX2 Silent p.S1551S 0.36 TCGA-G4-6586-01 8 70498679 70498679 G A SULF1 Missense_Mutation p.R167H 0.32 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 8 71499401 71499401 G T TRAM1 Missense_Mutation p.P194H 0.34 deleterious(0) probably_damaging(0.981) TCGA-G4-6586-01 8 74525999 74525999 G A STAU2 Missense_Mutation p.R291C 0.20 deleterious(0) probably_damaging(0.971) TCGA-G4-6586-01 8 74529623 74529623 A - STAU2 Frame_Shift_Del p.F158Lfs*16 0.24 TCGA-G4-6586-01 8 77618551 77618551 C T ZFHX4 Missense_Mutation p.A743V 0.31 possibly_damaging(0.682) TCGA-G4-6586-01 8 77764612 77764612 C T ZFHX4 Missense_Mutation p.P1819S 0.30 benign(0.012) TCGA-G4-6586-01 8 97299327 97299327 T C PTDSS1 Missense_Mutation p.W132R 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 8 99961792 99961792 C G OSR2 Missense_Mutation p.I204M 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6586-01 9 104192091 104192091 C A ALDOB Missense_Mutation p.Q90H 0.36 deleterious(0.01) benign(0.001) TCGA-G4-6586-01 9 104238520 104238520 G A TMEM246 Silent p.S285S 0.32 TCGA-G4-6586-01 9 108382270 108382270 T - FKTN Frame_Shift_Del p.F369Sfs*37 0.25 TCGA-G4-6586-01 9 109687544 109687544 C T ZNF462 Nonsense_Mutation p.R451* 0.33 TCGA-G4-6586-01 9 111692177 111692177 C T IKBKAP Missense_Mutation p.A59T 0.32 tolerated(0.3) benign(0.103) TCGA-G4-6586-01 9 113530127 113530127 C A MUSK Nonsense_Mutation p.Y316* 0.34 TCGA-G4-6586-01 9 116997931 116997931 A G COL27A1 Missense_Mutation p.K873R 0.44 unknown(0) TCGA-G4-6586-01 9 117072873 117072873 C A COL27A1 Silent p.T1827T 0.25 TCGA-G4-6586-01 9 117086074 117086074 G A ORM1 Silent p.E82E 0.37 TCGA-G4-6586-01 9 117130751 117130751 G C AKNA Missense_Mutation p.P514R 0.35 deleterious(0) possibly_damaging(0.704) TCGA-G4-6586-01 9 117159 117160 AA - FOXD4 Frame_Shift_Del p.A322Ifs*160 0.20 TCGA-G4-6586-01 9 118143 118143 A C FOXD4 5'UTR 0.09 TCGA-G4-6586-01 9 119115946 119115946 G T PAPPA Missense_Mutation p.E1407D 0.40 deleterious(0.02) possibly_damaging(0.523) TCGA-G4-6586-01 9 123253708 123253711 TCTT - CDK5RAP2 Frame_Shift_Del p.E454Kfs*11 0.43 TCGA-G4-6586-01 9 124441044 124441044 C T DAB2IP Missense_Mutation p.T43M 0.33 deleterious(0) probably_damaging(0.997) TCGA-G4-6586-01 9 125655207 125655207 T - RC3H2 Frame_Shift_Del p.K110Nfs*3 0.28 TCGA-G4-6586-01 9 130869725 130869725 G A SLC25A25 3'UTR 0.34 TCGA-G4-6586-01 9 131570315 131570315 C T TBC1D13 3'UTR 0.57 TCGA-G4-6586-01 9 132400185 132400185 G T ASB6 Silent p.R384R 0.33 TCGA-G4-6586-01 9 132584905 132584905 C T TOR1A Silent p.V133V 0.30 TCGA-G4-6586-01 9 132595859 132595859 T G C9orf78 Intron 0.45 TCGA-G4-6586-01 9 133932467 133932467 G - LAMC3 Frame_Shift_Del p.G699Vfs*185 0.27 TCGA-G4-6586-01 9 134358157 134358157 C T PRRC2B Missense_Mutation p.R1746C 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 9 135866405 135866405 C T GFI1B Missense_Mutation p.R321W 0.39 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 9 136308527 136308527 C T ADAMTS13 Silent p.S755S 0.33 TCGA-G4-6586-01 9 138585395 138585395 G A SOHLH1 3'UTR 0.33 TCGA-G4-6586-01 9 138606561 138606561 C T KCNT1 Silent p.D83D 0.27 TCGA-G4-6586-01 9 138713073 138713073 G T CAMSAP1 Missense_Mutation p.P1145H 0.36 deleterious(0.02) possibly_damaging(0.764) TCGA-G4-6586-01 9 139391555 139391555 G A NOTCH1 Silent p.D2212D 0.31 TCGA-G4-6586-01 9 139404294 139404294 A G NOTCH1 Missense_Mutation p.C954R 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 9 139906452 139906452 G A ABCA2 Silent p.V1793V 0.37 TCGA-G4-6586-01 9 139911737 139911737 A G ABCA2 Missense_Mutation p.Y822H 0.51 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 9 139925251 139925251 G A FUT7 Missense_Mutation p.R314W 0.45 deleterious(0) benign(0.028) TCGA-G4-6586-01 9 140056391 140056393 AAG - GRIN1 In_Frame_Del p.K517del 0.32 TCGA-G4-6586-01 9 140058382 140058382 T G GRIN1 Intron 0.30 TCGA-G4-6586-01 9 140099471 140099471 G T TMEM203 Silent p.A132A 0.22 TCGA-G4-6586-01 9 140322576 140322576 A G NOXA1 Missense_Mutation p.K118E 0.28 tolerated(0.16) benign(0.144) TCGA-G4-6586-01 9 140329341 140329341 G A ENTPD8 3'UTR 0.40 TCGA-G4-6586-01 9 140711977 140711977 A T EHMT1 Missense_Mutation p.E1154V 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 9 15471198 15471198 T - PSIP1 Intron 0.28 TCGA-G4-6586-01 9 177790 177790 T C CBWD1 Intron 0.33 TCGA-G4-6586-01 9 18777478 18777478 A G ADAMTSL1 Missense_Mutation p.N1084S 0.27 deleterious(0.03) benign(0.056) TCGA-G4-6586-01 9 3266248 3266248 T C RFX3 Missense_Mutation p.N472S 0.34 tolerated(0.38) benign(0.001) TCGA-G4-6586-01 9 33036611 33036611 C T DNAJA1 Silent p.L266L 0.31 TCGA-G4-6586-01 9 33038880 33038881 - GTTCAGTG DNAJA1 Frame_Shift_Ins p.C394Wfs*25 0.19 TCGA-G4-6586-01 9 33386092 33386092 G A AQP7 Missense_Mutation p.R170W 0.23 tolerated(0.24) benign(0.009) TCGA-G4-6586-01 9 34996478 34996478 G A DNAJB5 Missense_Mutation p.R257H 0.23 tolerated(0.06) benign(0.078) TCGA-G4-6586-01 9 35719515 35719515 C T TLN1 Splice_Site p.X563_splice 0.33 TCGA-G4-6586-01 9 35741827 35741827 G A GBA2 Missense_Mutation p.R210C 0.30 deleterious(0) benign(0.032) TCGA-G4-6586-01 9 36677174 36677174 A G MELK Missense_Mutation p.Q599R 0.25 tolerated(0.2) benign(0.008) TCGA-G4-6586-01 9 37034075 37034075 T - PAX5 5'UTR 0.25 TCGA-G4-6586-01 9 37441817 37441817 A G ZBTB5 Silent p.P244P 0.41 TCGA-G4-6586-01 9 40705745 40705745 C A SPATA31A3 Silent p.T1134T 0.25 TCGA-G4-6586-01 9 42368342 42368342 T - ANKRD20A2 5'UTR 0.17 TCGA-G4-6586-01 9 428473 428473 A G DOCK8 Missense_Mutation p.T1484A 0.27 deleterious(0) possibly_damaging(0.799) TCGA-G4-6586-01 9 43815818 43815818 C T CNTNAP3B Missense_Mutation p.A191V 0.21 tolerated(0.33) benign(0.001) TCGA-G4-6586-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.12 deleterious(0.01) possibly_damaging(0.573) TCGA-G4-6586-01 9 71152337 71152338 CT - TMEM252 Frame_Shift_Del p.E117Gfs*21 0.35 TCGA-G4-6586-01 9 72046146 72046146 C T APBA1 3'UTR 0.47 TCGA-G4-6586-01 9 79322643 79322643 T C PRUNE2 Missense_Mutation p.K1516R 0.25 tolerated(0.23) benign(0.006) TCGA-G4-6586-01 9 79999574 79999574 A C VPS13A Intron 0.12 TCGA-G4-6586-01 9 90345360 90345360 C T CTSL Silent p.Y283Y 0.39 TCGA-G4-6586-01 9 93636984 93636984 C G SYK Missense_Mutation p.T345R 0.28 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 9 96054862 96054862 G A WNK2 Silent p.P1742P 0.22 TCGA-G4-6586-01 9 97084511 97084511 G A NUTM2F Missense_Mutation p.R272W 0.31 deleterious(0.01) benign(0.212) TCGA-G4-6586-01 9 97535437 97535437 G A C9orf3 Silent p.T317T 0.30 TCGA-G4-6586-01 9 98215892 98215892 G A PTCH1 Missense_Mutation p.T1106M 0.45 deleterious(0) probably_damaging(0.999) TCGA-G4-6586-01 9 990380 990380 C T DMRT3 Missense_Mutation p.T265M 0.33 deleterious(0) possibly_damaging(0.652) TCGA-G4-6586-01 X 100611138 100611138 G A BTK Missense_Mutation p.R490C 0.27 deleterious(0.02) possibly_damaging(0.717) TCGA-G4-6586-01 X 10077878 10077878 C T WWC3 Silent p.A264A 0.37 TCGA-G4-6586-01 X 10085496 10085496 C T WWC3 Missense_Mutation p.S466L 0.40 tolerated(0.06) possibly_damaging(0.899) TCGA-G4-6586-01 X 101971867 101971867 T C GPRASP2 Silent p.S690S 0.32 TCGA-G4-6586-01 X 102612625 102612626 - A WBP5 Frame_Shift_Ins p.M7Nfs*8 0.28 TCGA-G4-6586-01 X 105451750 105451750 T - MUM1L1 3'UTR 0.29 TCGA-G4-6586-01 X 106070442 106070442 A G TBC1D8B Missense_Mutation p.I360V 0.36 tolerated(1) benign(0.002) TCGA-G4-6586-01 X 109764365 109764365 G T TDGF1P3 RNA 0.38 TCGA-G4-6586-01 X 109764667 109764667 C T TDGF1P3 RNA 0.40 TCGA-G4-6586-01 X 110951425 110951425 T - ALG13 Frame_Shift_Del p.S188Lfs*30 0.30 TCGA-G4-6586-01 X 117538369 117538369 A G WDR44 Missense_Mutation p.E448G 0.33 deleterious(0.04) benign(0.042) TCGA-G4-6586-01 X 11781991 11781991 A G MSL3 Missense_Mutation p.Q281R 0.31 deleterious(0) probably_damaging(0.989) TCGA-G4-6586-01 X 118221045 118221045 G T KIAA1210 Missense_Mutation p.A1383D 0.36 deleterious(0) benign(0.11) TCGA-G4-6586-01 X 120182661 120182661 G T GLUD2 Missense_Mutation p.D375Y 0.36 deleterious(0.05) possibly_damaging(0.739) TCGA-G4-6586-01 X 123615779 123615779 T C TENM1 Missense_Mutation p.D1251G 0.31 deleterious(0.01) benign(0.234) TCGA-G4-6586-01 X 12736252 12736252 G A FRMPD4 Missense_Mutation p.E1103K 0.35 deleterious_low_confidence(0) benign(0.26) TCGA-G4-6586-01 X 128615123 128615123 G A SMARCA1 Missense_Mutation p.R753C 0.30 deleterious(0) probably_damaging(0.995) TCGA-G4-6586-01 X 12939890 12939890 A - TLR8 Frame_Shift_Del p.N912Tfs*6 0.33 TCGA-G4-6586-01 X 130411872 130411872 T C IGSF1 Missense_Mutation p.K765E 0.34 tolerated(0.11) benign(0.358) TCGA-G4-6586-01 X 130420702 130420702 G A IGSF1 5'UTR 0.37 TCGA-G4-6586-01 X 134494335 134494335 G A ZNF449 Silent p.E297E 0.36 TCGA-G4-6586-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.33 TCGA-G4-6586-01 X 135750225 135750225 C T ARHGEF6 Missense_Mutation p.R765Q 0.37 tolerated_low_confidence(0.33) possibly_damaging(0.509) TCGA-G4-6586-01 X 136648909 136648909 G C ZIC3 Missense_Mutation p.G20A 0.42 tolerated_low_confidence(0.41) benign(0.001) TCGA-G4-6586-01 X 13778309 13778309 A T OFD1 Missense_Mutation p.N577I 0.30 deleterious(0.01) benign(0.156) TCGA-G4-6586-01 X 13779231 13779231 C T OFD1 Missense_Mutation p.P763L 0.40 deleterious(0.02) benign(0.094) TCGA-G4-6586-01 X 138724631 138724631 T C MCF2 Intron 0.32 TCGA-G4-6586-01 X 140270696 140270696 G A LDOC1 3'UTR 0.40 TCGA-G4-6586-01 X 140953263 140953263 A - MAGEC3 Frame_Shift_Del p.K45Rfs*15 0.29 TCGA-G4-6586-01 X 140995031 140995031 G T MAGEC1 Missense_Mutation p.S614I 0.31 deleterious_low_confidence(0) benign(0.403) TCGA-G4-6586-01 X 140995606 140995606 G A MAGEC1 Missense_Mutation p.A806T 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-G4-6586-01 X 144904367 144904367 G A SLITRK2 Missense_Mutation p.D142N 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 X 14625306 14625306 C T GLRA2 Nonsense_Mutation p.Q211* 0.34 TCGA-G4-6586-01 X 14627251 14627251 C A GLRA2 Missense_Mutation p.A285D 0.35 deleterious(0) probably_damaging(0.984) TCGA-G4-6586-01 X 1501437 1501437 C T IL3RA 3'UTR 0.26 TCGA-G4-6586-01 X 151123120 151123120 C A GABRE 3'UTR 0.35 TCGA-G4-6586-01 X 152845619 152845619 C - ATP2B3 Frame_Shift_Del p.P1177Rfs*10 0.39 TCGA-G4-6586-01 X 153043758 153043758 C T PLXNB3 Missense_Mutation p.R1841C 0.39 deleterious(0.02) benign(0.099) TCGA-G4-6586-01 X 153044538 153044538 G T PLXNB3 3'UTR 0.38 TCGA-G4-6586-01 X 153295963 153295963 G A MECP2 Missense_Mutation p.A451V 0.37 deleterious_low_confidence(0.02) unknown(0) TCGA-G4-6586-01 X 153577336 153577336 C T FLNA Missense_Mutation p.V2609M 0.37 tolerated(0.71) benign(0.024) TCGA-G4-6586-01 X 153599544 153599544 G T FLNA Silent p.R24R 0.31 TCGA-G4-6586-01 X 153649263 153649263 A G TAZ Missense_Mutation p.T267A 0.36 deleterious(0) possibly_damaging(0.751) TCGA-G4-6586-01 X 154132217 154132218 - T F8 Frame_Shift_Ins p.E1988Rfs*4 0.32 TCGA-G4-6586-01 X 155010125 155010125 A C SPRY3 3'UTR 0.35 TCGA-G4-6586-01 X 18260605 18260605 G A SCML2 Missense_Mutation p.T643I 0.32 tolerated(0.22) benign(0.071) TCGA-G4-6586-01 X 21609138 21609138 A G CNKSR2 Splice_Site p.X553_splice 0.34 TCGA-G4-6586-01 X 23019947 23019947 G A DDX53 Silent p.Q591Q 0.27 TCGA-G4-6586-01 X 26212922 26212922 T C MAGEB6 Missense_Mutation p.I320T 0.27 tolerated(0.24) benign(0.063) TCGA-G4-6586-01 X 2836030 2836030 G T ARSD Silent p.S226S 0.37 TCGA-G4-6586-01 X 31198488 31198488 G A DMD Missense_Mutation p.P3362L 0.30 possibly_damaging(0.859) TCGA-G4-6586-01 X 32490325 32490325 C T DMD Missense_Mutation p.V969I 0.35 probably_damaging(0.949) TCGA-G4-6586-01 X 34961603 34961603 C T FAM47B Missense_Mutation p.R219W 0.36 deleterious(0.04) possibly_damaging(0.901) TCGA-G4-6586-01 X 3530222 3530222 C T PRKX 3'UTR 0.25 TCGA-G4-6586-01 X 37027057 37027057 G A FAM47C Missense_Mutation p.E192K 0.36 tolerated(0.17) possibly_damaging(0.742) TCGA-G4-6586-01 X 37545261 37545261 C T XK Missense_Mutation p.A16V 0.38 deleterious(0.02) probably_damaging(0.952) TCGA-G4-6586-01 X 40458933 40458933 T G ATP6AP2 Nonsense_Mutation p.Y226* 0.26 TCGA-G4-6586-01 X 48418638 48418638 C - TBC1D25 Frame_Shift_Del p.S450Afs*22 0.29 TCGA-G4-6586-01 X 48920020 48920020 C - CCDC120 Frame_Shift_Del p.Q26Rfs*2 0.26 TCGA-G4-6586-01 X 49127238 49127238 G A PPP1R3F Silent p.Q302Q 0.37 TCGA-G4-6586-01 X 49127332 49127332 C T PPP1R3F Missense_Mutation p.R334C 0.49 deleterious(0) probably_damaging(0.951) TCGA-G4-6586-01 X 49137812 49137812 C T PPP1R3F Intron 0.24 TCGA-G4-6586-01 X 49459314 49459316 AGA - PAGE1 In_Frame_Del p.S20del 0.38 TCGA-G4-6586-01 X 51150387 51150387 G A CXorf67 Silent p.P173P 0.33 TCGA-G4-6586-01 X 54473748 54473748 G - FGD1 Frame_Shift_Del p.P859Lfs*4 0.30 TCGA-G4-6586-01 X 54839587 54839587 G A MAGED2 Missense_Mutation p.R401H 0.34 tolerated(0.15) benign(0.065) TCGA-G4-6586-01 X 56591146 56591158 GAATGCCGCACAA - UBQLN2 Frame_Shift_Del p.N281Sfs*92 0.37 TCGA-G4-6586-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.31 TCGA-G4-6586-01 X 601770 601770 G A SHOX Missense_Mutation p.C194Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 X 63574733 63574733 T C MTMR8 Missense_Mutation p.D131G 0.33 deleterious(0.01) benign(0.056) TCGA-G4-6586-01 X 65247911 65247911 G A VSIG4 Silent p.T246T 0.33 TCGA-G4-6586-01 X 66863123 66863123 T C AR Silent p.L548L 0.33 TCGA-G4-6586-01 X 68060323 68060323 G - EFNB1 Frame_Shift_Del p.G291Afs*30 0.35 TCGA-G4-6586-01 X 69595981 69595981 G A KIF4A Missense_Mutation p.R652H 0.31 tolerated(0.06) benign(0.022) TCGA-G4-6586-01 X 70147375 70147375 C T SLC7A3 Missense_Mutation p.R381H 0.47 tolerated(0.32) benign(0.001) TCGA-G4-6586-01 X 70316670 70316670 C T FOXO4 Missense_Mutation p.R98W 0.34 deleterious(0) probably_damaging(1) TCGA-G4-6586-01 X 70328453 70328453 C A IL2RG Nonsense_Mutation p.E284* 0.35 TCGA-G4-6586-01 X 73524828 73524828 G A ZCCHC13 3'UTR 0.35 TCGA-G4-6586-01 X 73740928 73740928 T C SLC16A2 Silent p.A178A 0.28 TCGA-G4-6586-01 X 77245264 77245264 C T ATP7A Silent p.N382N 0.16 TCGA-G4-6586-01 X 77245408 77245408 G A ATP7A Silent p.T430T 0.34 TCGA-G4-6586-01 X 83359590 83359590 T C RPS6KA6 Missense_Mutation p.K511E 0.23 deleterious(0.04) benign(0.056) TCGA-G4-6586-01 X 8433883 8433883 C T VCX3B Missense_Mutation p.A67V 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6586-01 X 85403796 85403796 G A DACH2 Missense_Mutation p.G58S 0.39 tolerated_low_confidence(0.38) possibly_damaging(0.881) TCGA-G4-6586-01 X 90690841 90690841 T C PABPC5 Missense_Mutation p.F89L 0.35 tolerated(0.1) benign(0) TCGA-G4-6586-01 X 9905307 9905307 G A SHROOM2 Missense_Mutation p.G1241R 0.43 deleterious(0) probably_damaging(0.998) TCGA-G4-6586-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.25 TCGA-G4-6586-01 X 99854136 99854136 A G TNMD Missense_Mutation p.H234R 0.38 tolerated(0.37) benign(0) TCGA-G4-6586-01 X 99943432 99943432 T C SYTL4 Silent p.E307E 0.32 TCGA-G4-6588-01 10 100167722 100167722 G A PYROXD2 Silent p.T60T 0.31 TCGA-G4-6588-01 10 100186987 100186987 G - HPS1 Frame_Shift_Del p.M325Wfs*6 0.32 TCGA-G4-6588-01 10 100453700 100453700 T C HPSE2 Missense_Mutation p.M321V 0.35 deleterious(0) possibly_damaging(0.505) TCGA-G4-6588-01 10 101089259 101089259 G A CNNM1 Missense_Mutation p.A39T 0.40 tolerated(0.15) benign(0.018) TCGA-G4-6588-01 10 101162431 101162431 A G GOT1 Silent p.S336S 0.34 TCGA-G4-6588-01 10 102306928 102306928 C A HIF1AN Missense_Mutation p.P309H 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 10 102684006 102684006 C T FAM178A Silent p.G416G 0.17 TCGA-G4-6588-01 10 102766629 102766629 C T LZTS2 Missense_Mutation p.R572W 0.53 deleterious(0) benign(0.36) TCGA-G4-6588-01 10 103432678 103432678 C T FBXW4 Silent p.T223T 0.08 TCGA-G4-6588-01 10 104486854 104486854 G A SFXN2 Missense_Mutation p.R91H 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 10 104849492 104849492 G T NT5C2 Silent p.P541P 0.23 TCGA-G4-6588-01 10 105833957 105833957 G T COL17A1 Missense_Mutation p.P122T 0.13 unknown(0) TCGA-G4-6588-01 10 108439065 108439065 G A SORCS1 Silent p.D563D 0.42 TCGA-G4-6588-01 10 111876050 111876050 C A ADD3 Missense_Mutation p.P123H 0.27 tolerated(0.93) benign(0.005) TCGA-G4-6588-01 10 112361567 112361567 T C SMC3 Silent p.C939C 0.44 TCGA-G4-6588-01 10 112541584 112541584 C - RBM20 Frame_Shift_Del p.L408Sfs*17 0.36 TCGA-G4-6588-01 10 112839198 112839198 G - ADRA2A 3'UTR 0.18 TCGA-G4-6588-01 10 11330471 11330472 CT - CELF2 Frame_Shift_Del p.S313Yfs*47 0.18 TCGA-G4-6588-01 10 11505057 11505057 G T USP6NL Silent p.R641R 0.13 TCGA-G4-6588-01 10 11531162 11531162 G A USP6NL Silent p.N218N 0.41 TCGA-G4-6588-01 10 115806339 115806339 A G ADRB1 3'UTR 0.30 TCGA-G4-6588-01 10 115910959 115910959 T C C10orf118 Silent p.E260E 0.08 TCGA-G4-6588-01 10 116050997 116050997 G T VWA2 3'Flank 0.38 TCGA-G4-6588-01 10 119003688 119003688 G A SLC18A2 Missense_Mutation p.A110T 0.25 tolerated(0.63) benign(0.001) TCGA-G4-6588-01 10 119029595 119029595 G A SLC18A2 Silent p.S400S 0.30 TCGA-G4-6588-01 10 12214812 12214812 T C NUDT5 Missense_Mutation p.T147A 0.32 tolerated(0.61) benign(0.046) TCGA-G4-6588-01 10 122661812 122661812 C T WDR11 Nonsense_Mutation p.Q911* 0.32 TCGA-G4-6588-01 10 123279674 123279674 G A FGFR2 Missense_Mutation p.P253L 0.30 deleterious(0.01) benign(0.024) TCGA-G4-6588-01 10 124390629 124390629 C T DMBT1 Missense_Mutation p.R1931C 0.34 tolerated(0.19) probably_damaging(0.978) TCGA-G4-6588-01 10 124740213 124740213 T C PSTK Splice_Site p.X72_splice 0.24 TCGA-G4-6588-01 10 125434431 125434431 C T GPR26 Missense_Mutation p.P256S 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-G4-6588-01 10 129216735 129216735 A G DOCK1 Missense_Mutation p.N1520S 0.27 deleterious(0.04) possibly_damaging(0.837) TCGA-G4-6588-01 10 12940430 12940431 - G CCDC3 Frame_Shift_Ins p.Y267Lfs*25 0.32 TCGA-G4-6588-01 10 134663774 134663774 T C TTC40 Missense_Mutation p.T1976A 0.24 tolerated(1) benign(0.001) TCGA-G4-6588-01 10 134738342 134738342 C T TTC40 Missense_Mutation p.V372M 0.32 deleterious(0.01) possibly_damaging(0.569) TCGA-G4-6588-01 10 134743282 134743282 C T TTC40 Missense_Mutation p.R298H 0.19 tolerated(0.38) benign(0.013) TCGA-G4-6588-01 10 135083922 135083922 G A ADAM8 Missense_Mutation p.T576I 0.28 tolerated(0.14) benign(0.428) TCGA-G4-6588-01 10 135084390 135084390 C T ADAM8 Missense_Mutation p.G520E 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.34 TCGA-G4-6588-01 10 16970223 16970223 G A CUBN Silent p.Y2068Y 0.41 TCGA-G4-6588-01 10 18112218 18112219 - A MRC1 Frame_Shift_Ins p.T81Nfs*12 0.32 TCGA-G4-6588-01 10 21784518 21784518 G A CASC10 3'UTR 0.27 TCGA-G4-6588-01 10 22678226 22678226 A G SPAG6 Silent p.A330A 0.33 TCGA-G4-6588-01 10 23290915 23290915 A C ARMC3 Missense_Mutation p.K498T 0.32 deleterious(0) benign(0.262) TCGA-G4-6588-01 10 26417445 26417445 A G MYO3A Missense_Mutation p.Q747R 0.31 deleterious(0) possibly_damaging(0.733) TCGA-G4-6588-01 10 27306582 27306582 T - ANKRD26 Frame_Shift_Del p.K1452Rfs*7 0.27 TCGA-G4-6588-01 10 27342272 27342272 C A ANKRD26 Missense_Mutation p.G538W 0.30 tolerated(0.05) possibly_damaging(0.88) TCGA-G4-6588-01 10 28527621 28527621 C T MPP7 5'UTR 0.39 TCGA-G4-6588-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.25 TCGA-G4-6588-01 10 30316040 30316040 T C KIAA1462 Missense_Mutation p.K1013E 0.41 tolerated(0.94) benign(0.002) TCGA-G4-6588-01 10 30317187 30317187 G A KIAA1462 Silent p.T630T 0.33 TCGA-G4-6588-01 10 30318190 30318190 G T KIAA1462 Missense_Mutation p.P296Q 0.33 deleterious(0.02) possibly_damaging(0.803) TCGA-G4-6588-01 10 32120730 32120730 T C ARHGAP12 Splice_Site p.X463_splice 0.30 TCGA-G4-6588-01 10 33469093 33469093 C A NRP1 Missense_Mutation p.A895S 0.27 deleterious(0.02) probably_damaging(1) TCGA-G4-6588-01 10 38406505 38406505 G A ZNF37A Nonsense_Mutation p.W142* 0.34 TCGA-G4-6588-01 10 43622097 43622097 A G RET Silent p.T1038T 0.38 TCGA-G4-6588-01 10 43654207 43654207 T - CSGALNACT2 Frame_Shift_Del p.F237Lfs*12 0.31 TCGA-G4-6588-01 10 47945348 47945348 C T FAM21B Missense_Mutation p.R950C 0.59 deleterious(0) probably_damaging(0.988) TCGA-G4-6588-01 10 48372653 48372653 G A ZNF488 3'UTR 0.24 TCGA-G4-6588-01 10 48389438 48389438 G A RBP3 Silent p.H480H 0.24 TCGA-G4-6588-01 10 49448410 49448410 A C FRMPD2 Silent p.P231P 0.45 TCGA-G4-6588-01 10 49659218 49659218 C T ARHGAP22 Intron 0.34 TCGA-G4-6588-01 10 5014853 5014853 C T AKR1C1 Missense_Mutation p.A253V 0.16 deleterious(0.01) possibly_damaging(0.805) TCGA-G4-6588-01 10 50887726 50887726 G A C10orf53 5'Flank 0.46 TCGA-G4-6588-01 10 50943365 50943365 G A OGDHL Missense_Mutation p.A981V 0.40 deleterious(0) probably_damaging(0.984) TCGA-G4-6588-01 10 52570900 52570900 G A A1CF Nonsense_Mutation p.Q462* 0.32 TCGA-G4-6588-01 10 53921668 53921668 G T PRKG1 Nonsense_Mutation p.G341* 0.33 TCGA-G4-6588-01 10 5568079 5568079 C A CALML3 3'UTR 0.30 TCGA-G4-6588-01 10 55912943 55912943 G A PCDH15 Silent p.I567I 0.27 TCGA-G4-6588-01 10 58119284 58119284 C T ZWINT Missense_Mutation p.A145T 0.29 tolerated(0.18) probably_damaging(0.99) TCGA-G4-6588-01 10 5924972 5924972 A G ANKRD16 Silent p.A282A 0.19 TCGA-G4-6588-01 10 6146892 6146892 A G RBM17 Splice_Site p.X81_splice 0.14 TCGA-G4-6588-01 10 62545455 62545455 A G CDK1 Silent p.L76L 0.26 TCGA-G4-6588-01 10 68979415 68979415 G T CTNNA3 Missense_Mutation p.P265T 0.32 tolerated(0.6) benign(0.213) TCGA-G4-6588-01 10 69881902 69881902 G A MYPN Missense_Mutation p.R236H 0.23 tolerated(0.3) benign(0.004) TCGA-G4-6588-01 10 70101924 70101924 T C HNRNPH3 3'UTR 0.30 TCGA-G4-6588-01 10 70666569 70666569 T - DDX50 Frame_Shift_Del p.S64Lfs*3 0.25 TCGA-G4-6588-01 10 70980056 70980056 G A HKDC1 5'Flank 0.50 TCGA-G4-6588-01 10 72300995 72300995 C T PALD1 Silent p.I682I 0.27 TCGA-G4-6588-01 10 73577151 73577151 A - PSAP 3'UTR 0.22 TCGA-G4-6588-01 10 75231310 75231310 A G PPP3CB Silent p.P195P 0.12 TCGA-G4-6588-01 10 75911080 75911080 T C ADK Missense_Mutation p.V15A 0.25 tolerated_low_confidence(0.16) unknown(0) TCGA-G4-6588-01 10 7621907 7621907 G A ITIH5 Missense_Mutation p.T410M 0.32 deleterious(0) probably_damaging(0.979) TCGA-G4-6588-01 10 76780904 76780904 A - KAT6B Frame_Shift_Del p.K962Sfs*2 0.12 TCGA-G4-6588-01 10 76910314 76910314 C T SAMD8 Missense_Mutation p.R10C 0.29 tolerated(0.07) possibly_damaging(0.717) TCGA-G4-6588-01 10 76990818 76990818 C T VDAC2 3'UTR 0.10 TCGA-G4-6588-01 10 7759656 7759656 T G ITIH2 Missense_Mutation p.F179V 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 10 7801789 7801789 A - KIN Intron 0.43 TCGA-G4-6588-01 10 78673850 78673850 T - KCNMA1 Intron 0.30 TCGA-G4-6588-01 10 82275992 82275992 G T TSPAN14 Silent p.T218T 0.26 TCGA-G4-6588-01 10 84744538 84744538 G T NRG3 Intron 0.34 TCGA-G4-6588-01 10 861003 861003 C T LARP4B Missense_Mutation p.S568N 0.39 tolerated(1) benign(0.001) TCGA-G4-6588-01 10 87362413 87362413 G A GRID1 Missense_Mutation p.L883F 0.27 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-G4-6588-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.31 TCGA-G4-6588-01 10 89126047 89126047 G A NUTM2D Intron 0.16 TCGA-G4-6588-01 10 89720679 89720679 C T PTEN Missense_Mutation p.T277I 0.28 deleterious(0) probably_damaging(0.929) TCGA-G4-6588-01 10 91066617 91066618 AG - IFIT2 Frame_Shift_Del p.N304Wfs*23 0.24 TCGA-G4-6588-01 10 93608292 93608292 A G TNKS2 Silent p.A837A 0.28 TCGA-G4-6588-01 10 93794 93794 C T TUBB8 Missense_Mutation p.V180M 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.784) TCGA-G4-6588-01 10 94818145 94818145 T A EXOC6 3'UTR 0.33 TCGA-G4-6588-01 10 95380445 95380445 G A PDE6C Silent p.L179L 0.24 TCGA-G4-6588-01 10 96313887 96313887 G A HELLS Missense_Mutation p.R53H 0.35 tolerated(0.11) benign(0.001) TCGA-G4-6588-01 10 97031449 97031449 G T PDLIM1 Missense_Mutation p.H63Q 0.35 deleterious(0) possibly_damaging(0.905) TCGA-G4-6588-01 10 97779109 97779109 A - CC2D2B Intron 0.33 TCGA-G4-6588-01 10 97919833 97919833 A - ZNF518A RNA 0.35 TCGA-G4-6588-01 10 98155097 98155097 G A TLL2 Missense_Mutation p.R525W 0.46 deleterious(0) probably_damaging(0.938) TCGA-G4-6588-01 10 98182317 98182317 T - TLL2 Frame_Shift_Del p.N269Tfs*11 0.26 TCGA-G4-6588-01 10 98741468 98741468 T C C10orf12 Silent p.D107D 0.41 TCGA-G4-6588-01 11 100999341 100999341 G A PGR Missense_Mutation p.A154V 0.46 tolerated_low_confidence(0.28) benign(0.009) TCGA-G4-6588-01 11 102564652 102564652 C A MMP27 Missense_Mutation p.G393V 0.39 deleterious(0) probably_damaging(0.969) TCGA-G4-6588-01 11 103270420 103270420 T C DYNC2H1 Silent p.P4069P 0.18 TCGA-G4-6588-01 11 104872912 104872912 T - CASP5 Frame_Shift_Del p.K200Rfs*33 0.24 TCGA-G4-6588-01 11 104877856 104877856 A G CASP5 Silent p.F142F 0.25 TCGA-G4-6588-01 11 105481698 105481698 C T GRIA4 5'UTR 0.13 TCGA-G4-6588-01 11 108010834 108010834 C T ACAT1 Nonsense_Mutation p.R208* 0.33 TCGA-G4-6588-01 11 108018053 108018053 A G ACAT1 Missense_Mutation p.Y407C 0.23 deleterious(0.01) possibly_damaging(0.83) TCGA-G4-6588-01 11 108122630 108122630 A G ATM Silent p.G558G 0.33 TCGA-G4-6588-01 11 108199947 108199947 A G ATM Missense_Mutation p.H2430R 0.33 tolerated(0.5) benign(0.012) TCGA-G4-6588-01 11 108380192 108380192 A C EXPH5 3'UTR 0.36 TCGA-G4-6588-01 11 109295373 109295373 G - C11orf87 3'UTR 0.25 TCGA-G4-6588-01 11 111385565 111385566 - C C11orf88 Frame_Shift_Ins p.L23Ifs*16 0.24 TCGA-G4-6588-01 11 111625240 111625240 T A PPP2R1B Missense_Mutation p.I338F 0.23 deleterious(0.01) benign(0.36) TCGA-G4-6588-01 11 111951135 111951135 G A C11orf57 Missense_Mutation p.R58Q 0.28 tolerated(0.12) benign(0.105) TCGA-G4-6588-01 11 111953575 111953576 AG - C11orf57 Frame_Shift_Del p.K258Sfs*9 0.19 TCGA-G4-6588-01 11 112050080 112050080 G A BCO2 Silent p.P56P 0.20 TCGA-G4-6588-01 11 113270401 113270401 G A ANKK1 Silent p.R570R 0.26 TCGA-G4-6588-01 11 11374339 11374340 - G CSNK2A3 Frame_Shift_Ins p.A110Rfs*5 0.30 TCGA-G4-6588-01 11 1151683 1151683 C A MUC5AC Silent p.A19A 0.18 TCGA-G4-6588-01 11 116661409 116661409 C T APOA5 Missense_Mutation p.R179H 0.28 deleterious(0.02) benign(0.024) TCGA-G4-6588-01 11 117279740 117279742 GAG - CEP164 In_Frame_Del 0.28 TCGA-G4-6588-01 11 117299010 117299010 C T DSCAML1 3'UTR 0.41 TCGA-G4-6588-01 11 117651379 117651379 C T DSCAML1 Missense_Mutation p.D125N 0.37 tolerated(0.09) probably_damaging(0.917) TCGA-G4-6588-01 11 118352743 118352743 A - KMT2A Frame_Shift_Del p.E1318Kfs*38 0.29 TCGA-G4-6588-01 11 118375915 118375915 A - KMT2A Frame_Shift_Del p.I3105Sfs*3 0.27 TCGA-G4-6588-01 11 118968244 118968244 C T DPAGT1 Missense_Mutation p.G312D 0.28 tolerated(0.44) benign(0.179) TCGA-G4-6588-01 11 119057265 119057265 C T PDZD3 Nonsense_Mutation p.Q66* 0.29 TCGA-G4-6588-01 11 120008033 120008033 C T TRIM29 Missense_Mutation p.C236Y 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 11 120111018 120111018 G - POU2F3 Intron 0.20 TCGA-G4-6588-01 11 120979961 120979961 C T TECTA Silent p.S80S 0.38 TCGA-G4-6588-01 11 121033039 121033039 C T TECTA Silent p.F1744F 0.09 TCGA-G4-6588-01 11 123909678 123909678 T A OR10G7 Missense_Mutation p.I11F 0.16 tolerated(0.14) benign(0.005) TCGA-G4-6588-01 11 124189732 124189732 T C OR8D2 Missense_Mutation p.D121G 0.15 deleterious(0) possibly_damaging(0.612) TCGA-G4-6588-01 11 124739440 124739440 G A ROBO3 Silent p.P194P 0.33 TCGA-G4-6588-01 11 125315887 125315887 A G FEZ1 3'UTR 0.27 TCGA-G4-6588-01 11 126073304 126073304 C A RPUSD4 3'UTR 0.38 TCGA-G4-6588-01 11 126391322 126391322 T C KIRREL3 Silent p.S107S 0.27 TCGA-G4-6588-01 11 1271199 1271199 C A MUC5B Silent p.S4363S 0.33 TCGA-G4-6588-01 11 1282617 1282617 A G MUC5B Splice_Site p.X5690_splice 0.34 TCGA-G4-6588-01 11 128709351 128709351 G A KCNJ1 Missense_Mutation p.A282V 0.28 deleterious(0.01) benign(0.324) TCGA-G4-6588-01 11 128855910 128855910 G - ARHGAP32 Frame_Shift_Del p.P491Hfs*10 0.25 TCGA-G4-6588-01 11 128858019 128858019 C T ARHGAP32 Silent p.V385V 0.24 TCGA-G4-6588-01 11 129802074 129802074 G A PRDM10 Missense_Mutation p.R404W 0.25 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 11 132177681 132177681 G A NTM Missense_Mutation p.A209T 0.29 tolerated(0.85) benign(0.019) TCGA-G4-6588-01 11 133788972 133788972 C T IGSF9B Intron 0.34 TCGA-G4-6588-01 11 133790063 133790063 C T IGSF9B Missense_Mutation p.R1186H 0.31 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-G4-6588-01 11 133790373 133790374 - G IGSF9B Frame_Shift_Ins p.T1083Hfs*72 0.33 TCGA-G4-6588-01 11 133807733 133807733 G A IGSF9B Missense_Mutation p.T178M 0.31 tolerated(0.12) benign(0.012) TCGA-G4-6588-01 11 13750190 13750190 A G FAR1 Missense_Mutation p.I473V 0.23 tolerated(1) benign(0.001) TCGA-G4-6588-01 11 17482049 17482049 C T ABCC8 Missense_Mutation p.V333I 0.34 tolerated(0.35) benign(0.005) TCGA-G4-6588-01 11 17631342 17631342 C A OTOG Missense_Mutation p.L1511I 0.26 benign(0.049) TCGA-G4-6588-01 11 18369110 18369110 A T GTF2H1 Intron 0.36 TCGA-G4-6588-01 11 18497057 18497057 A - LDHAL6A Frame_Shift_Del p.N156Tfs*33 0.29 TCGA-G4-6588-01 11 18728744 18728744 G - IGSF22 Frame_Shift_Del p.T1100Qfs*13 0.36 TCGA-G4-6588-01 11 20057527 20057527 A G NAV2 Missense_Mutation p.S954G 0.28 deleterious(0.02) probably_damaging(0.983) TCGA-G4-6588-01 11 2005795 2005795 C A MRPL23-AS1 RNA 0.25 TCGA-G4-6588-01 11 26353692 26353692 G A ANO3 5'UTR 0.33 TCGA-G4-6588-01 11 281681 281681 G A NLRP6 Silent p.V649V 0.22 TCGA-G4-6588-01 11 2939325 2939325 G T SLC22A18 Missense_Mutation p.G255W 0.29 deleterious(0.01) possibly_damaging(0.654) TCGA-G4-6588-01 11 32450149 32450149 G T WT1 Silent p.T221T 0.29 TCGA-G4-6588-01 11 32624378 32624378 T A CCDC73 Missense_Mutation p.E1073D 0.27 tolerated(0.19) benign(0.02) TCGA-G4-6588-01 11 33564521 33564521 T C KIAA1549L Missense_Mutation p.V174A 0.17 tolerated_low_confidence(0.33) benign(0.004) TCGA-G4-6588-01 11 34192470 34192470 T C ABTB2 Missense_Mutation p.N516D 0.16 tolerated(0.23) benign(0.316) TCGA-G4-6588-01 11 3681339 3681340 - G ART1 Frame_Shift_Ins p.F200Lfs*16 0.14 TCGA-G4-6588-01 11 3692544 3692544 G A CHRNA10 5'UTR 0.11 TCGA-G4-6588-01 11 3744397 3744397 C T NUP98 Missense_Mutation p.M712I 0.31 tolerated(0.47) benign(0.001) TCGA-G4-6588-01 11 43428913 43428913 C A TTC17 Missense_Mutation p.P617H 0.35 deleterious(0) probably_damaging(0.95) TCGA-G4-6588-01 11 44105042 44105042 G A ACCS Silent p.L441L 0.24 TCGA-G4-6588-01 11 44297172 44297172 G - ALX4 Frame_Shift_Del p.P168Lfs*13 0.17 TCGA-G4-6588-01 11 45274158 45274158 G T SYT13 Silent p.T220T 0.26 TCGA-G4-6588-01 11 45955607 45955607 G - PHF21A Frame_Shift_Del p.P652Lfs*104 0.26 TCGA-G4-6588-01 11 45959805 45959805 C T PHF21A Missense_Mutation p.C503Y 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 11 46744959 46744959 C T F2 Silent p.A150A 0.25 TCGA-G4-6588-01 11 47159067 47159067 C A C11orf49 Intron 0.30 TCGA-G4-6588-01 11 49175845 49175845 G A FOLH1 Missense_Mutation p.A608V 0.32 tolerated(0.23) benign(0.032) TCGA-G4-6588-01 11 55587136 55587136 A G OR5D18 Missense_Mutation p.T11A 0.35 tolerated(0.81) benign(0.003) TCGA-G4-6588-01 11 55703338 55703338 A - OR5I1 Frame_Shift_Del p.F180Sfs*49 0.16 TCGA-G4-6588-01 11 55999765 55999765 C T OR5T2 Silent p.V299V 0.29 TCGA-G4-6588-01 11 562174 562174 G A RASSF7 Missense_Mutation p.G74R 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 11 57069968 57069968 C T TNKS1BP1 Missense_Mutation p.A1550T 0.46 tolerated_low_confidence(0.23) benign(0.014) TCGA-G4-6588-01 11 57076216 57076216 G T TNKS1BP1 Silent p.T1323T 0.29 TCGA-G4-6588-01 11 57427285 57427285 C T CLP1 Nonsense_Mutation p.R113* 0.26 TCGA-G4-6588-01 11 57466520 57466520 C T ZDHHC5 Missense_Mutation p.R538C 0.17 tolerated(0.05) possibly_damaging(0.548) TCGA-G4-6588-01 11 57480271 57480272 TT - TMX2 Frame_Shift_Del p.F61* 0.30 TCGA-G4-6588-01 11 59573970 59573970 T C MRPL16 Silent p.Q202Q 0.30 TCGA-G4-6588-01 11 608864 608864 G A PHRF1 Silent p.K1135K 0.46 TCGA-G4-6588-01 11 60899951 60899951 A G VPS37C Missense_Mutation p.S137P 0.19 tolerated(0.17) benign(0.081) TCGA-G4-6588-01 11 61032474 61032474 T C VWCE Missense_Mutation p.Q698R 0.24 deleterious(0) possibly_damaging(0.688) TCGA-G4-6588-01 11 61053835 61053835 G A VWCE Silent p.C164C 0.23 TCGA-G4-6588-01 11 62362015 62362016 - C MTA2 Frame_Shift_Ins p.I556Hfs*8 0.26 TCGA-G4-6588-01 11 62376450 62376450 T C EML3 Missense_Mutation p.T305A 0.32 deleterious(0) benign(0.394) TCGA-G4-6588-01 11 626517 626517 C A SCT Missense_Mutation p.G94W 0.28 deleterious_low_confidence(0.05) possibly_damaging(0.807) TCGA-G4-6588-01 11 62747355 62747355 T C SLC22A6 Missense_Mutation p.Y368C 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 11 6292040 6292040 C T CCKBR Intron 0.08 TCGA-G4-6588-01 11 63671582 63671582 C - MARK2 Frame_Shift_Del p.T549Rfs*67 0.48 TCGA-G4-6588-01 11 63766828 63766828 T G MACROD1 Missense_Mutation p.E289A 0.28 deleterious(0.01) benign(0.003) TCGA-G4-6588-01 11 63970919 63970919 C T STIP1 Intron 0.24 TCGA-G4-6588-01 11 63979147 63979147 G A FERMT3 Silent p.Q238Q 0.09 TCGA-G4-6588-01 11 64082519 64082519 C T ESRRA Silent p.S263S 0.35 TCGA-G4-6588-01 11 64085764 64085764 C T PRDX5 Missense_Mutation p.A26V 0.24 tolerated_low_confidence(0.1) benign(0.028) TCGA-G4-6588-01 11 64109466 64109466 C T CCDC88B Missense_Mutation p.R226W 0.21 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 11 64572093 64572093 G - MEN1 Frame_Shift_Del p.R521Gfs*43 0.20 TCGA-G4-6588-01 11 64597002 64597002 C T CDC42BPG Missense_Mutation p.G1303D 0.19 tolerated(0.42) benign(0.243) TCGA-G4-6588-01 11 64700631 64700631 T C PPP2R5B Missense_Mutation p.L420P 0.12 deleterious(0) possibly_damaging(0.505) TCGA-G4-6588-01 11 6478016 6478016 C T TRIM3 Missense_Mutation p.A314T 0.50 tolerated(1) benign(0.124) TCGA-G4-6588-01 11 64981481 64981481 C - CAPN1 3'Flank 0.35 TCGA-G4-6588-01 11 65113517 65113518 TG - DPF2 Frame_Shift_Del p.C298Wfs*41 0.30 TCGA-G4-6588-01 11 65366866 65366866 G A MAP3K11 Silent p.R735R 0.32 TCGA-G4-6588-01 11 65416733 65416733 G T SIPA1 Missense_Mutation p.R769S 0.21 deleterious(0.01) possibly_damaging(0.905) TCGA-G4-6588-01 11 65427138 65427138 A T RELA Missense_Mutation p.N186K 0.42 tolerated(0.31) possibly_damaging(0.868) TCGA-G4-6588-01 11 65617027 65617027 A G SNX32 Missense_Mutation p.K39E 0.44 deleterious(0) possibly_damaging(0.729) TCGA-G4-6588-01 11 65651043 65651043 G A CTSW Missense_Mutation p.R362H 0.30 tolerated(0.36) benign(0.091) TCGA-G4-6588-01 11 6566211 6566211 G A DNHD1 Missense_Mutation p.V1348M 0.36 probably_damaging(1) TCGA-G4-6588-01 11 6578493 6578493 C T DNHD1 Silent p.C2656C 0.18 TCGA-G4-6588-01 11 65792933 65792933 G A CATSPER1 Silent p.H306H 0.26 TCGA-G4-6588-01 11 65812911 65812911 G A GAL3ST3 5'UTR 0.30 TCGA-G4-6588-01 11 6585948 6585948 A C DNHD1 Missense_Mutation p.D3557A 0.17 probably_damaging(1) TCGA-G4-6588-01 11 66055105 66055105 G - YIF1A Frame_Shift_Del p.R131Gfs*50 0.30 TCGA-G4-6588-01 11 66082481 66082482 - C CD248 Frame_Shift_Ins p.E673Gfs*12 0.25 TCGA-G4-6588-01 11 66108714 66108714 C - BRMS1 Frame_Shift_Del p.L108Cfs*22 0.19 TCGA-G4-6588-01 11 66188782 66188782 C A NPAS4 Missense_Mutation p.S44R 0.30 deleterious(0) probably_damaging(0.972) TCGA-G4-6588-01 11 66294405 66294405 A G BBS1 Intron 0.41 TCGA-G4-6588-01 11 66373239 66373239 C T CCS Silent p.C246C 0.28 TCGA-G4-6588-01 11 66394194 66394194 G A RBM14 3'UTR 0.30 TCGA-G4-6588-01 11 66436270 66436270 T C RBM4B Missense_Mutation p.D302G 0.32 deleterious(0) possibly_damaging(0.843) TCGA-G4-6588-01 11 6648842 6648842 T C DCHS1 Missense_Mutation p.M1810V 0.27 tolerated(0.46) benign(0.001) TCGA-G4-6588-01 11 6661150 6661150 G A DCHS1 Silent p.S565S 0.30 TCGA-G4-6588-01 11 67075758 67075758 C - SSH3 Frame_Shift_Del p.H335Tfs*25 0.14 TCGA-G4-6588-01 11 67232310 67232310 A T TMEM134 Missense_Mutation p.F157I 0.12 deleterious(0.01) benign(0.02) TCGA-G4-6588-01 11 67259394 67259394 G - PITPNM1 3'UTR 0.44 TCGA-G4-6588-01 11 67782801 67782801 C T ALDH3B1 Missense_Mutation p.R12W 0.56 deleterious(0.01) probably_damaging(1) TCGA-G4-6588-01 11 67810131 67810131 G A TCIRG1 Missense_Mutation p.R73Q 0.33 tolerated(0.33) benign(0.037) TCGA-G4-6588-01 11 68154147 68154147 A C LRP5 Missense_Mutation p.E460A 0.21 deleterious(0) probably_damaging(0.925) TCGA-G4-6588-01 11 68204423 68204423 A C LRP5 Missense_Mutation p.D1356A 0.25 deleterious(0.02) possibly_damaging(0.859) TCGA-G4-6588-01 11 6867398 6867398 C T OR10A5 Missense_Mutation p.T162I 0.30 tolerated(0.12) benign(0.026) TCGA-G4-6588-01 11 68696655 68696655 G A IGHMBP2 Silent p.A355A 0.21 TCGA-G4-6588-01 11 69465979 69465979 G T CCND1 Nonsense_Mutation p.E273* 0.30 TCGA-G4-6588-01 11 70220787 70220787 C T PPFIA1 Intron 0.62 TCGA-G4-6588-01 11 70507838 70507838 G A SHANK2 Intron 0.28 TCGA-G4-6588-01 11 71194032 71194032 C T NADSYN1 Missense_Mutation p.R430W 0.20 deleterious(0) probably_damaging(0.982) TCGA-G4-6588-01 11 71948314 71948314 T C INPPL1 Missense_Mutation p.V1009A 0.12 tolerated(0.8) benign(0) TCGA-G4-6588-01 11 72287931 72287931 C T PDE2A 3'UTR 0.17 TCGA-G4-6588-01 11 72423330 72423330 C T ARAP1 Silent p.A311A 0.38 TCGA-G4-6588-01 11 73676080 73676080 G A DNAJB13 Silent p.R164R 0.42 TCGA-G4-6588-01 11 74336575 74336575 A - POLD3 Frame_Shift_Del p.A288Qfs*17 0.14 TCGA-G4-6588-01 11 74413954 74413954 C T CHRDL2 Silent p.P335P 0.37 TCGA-G4-6588-01 11 74800161 74800161 G - OR2AT4 Frame_Shift_Del p.Q200Rfs*37 0.18 TCGA-G4-6588-01 11 75115961 75115961 G A RPS3 Intron 0.39 TCGA-G4-6588-01 11 75280276 75280276 G T SERPINH1 Intron 0.32 TCGA-G4-6588-01 11 771026 771026 G A PDDC1 Missense_Mutation p.A208V 0.27 deleterious(0) possibly_damaging(0.68) TCGA-G4-6588-01 11 77103399 77103399 C T PAK1 Missense_Mutation p.R56Q 0.34 tolerated(0.24) possibly_damaging(0.639) TCGA-G4-6588-01 11 78781032 78781032 C T TENM4 5'UTR 0.35 TCGA-G4-6588-01 11 8132201 8132201 G A RIC3 3'UTR 0.25 TCGA-G4-6588-01 11 82443396 82443396 G A FAM181B 3'UTR 0.40 TCGA-G4-6588-01 11 86120397 86120397 C T CCDC81 Missense_Mutation p.P403L 0.33 deleterious(0) possibly_damaging(0.775) TCGA-G4-6588-01 11 86518972 86518972 G A PRSS23 Missense_Mutation p.R96H 0.08 deleterious(0.01) probably_damaging(0.912) TCGA-G4-6588-01 11 869846 869846 C T CHID1 3'UTR 0.33 TCGA-G4-6588-01 11 8752605 8752605 G A ST5 Nonsense_Mutation p.Q78* 0.34 TCGA-G4-6588-01 11 88027248 88027248 G A CTSC Missense_Mutation p.R440W 0.16 deleterious(0.05) possibly_damaging(0.634) TCGA-G4-6588-01 11 89431630 89431630 C T FOLH1B RNA 0.28 TCGA-G4-6588-01 11 89443668 89443669 - T TRIM77 Frame_Shift_Ins p.A70Cfs*2 0.30 TCGA-G4-6588-01 11 89948399 89948399 C A CHORDC1 Splice_Site p.X39_splice 0.29 TCGA-G4-6588-01 11 9049065 9049065 A G SCUBE2 Silent p.I792I 0.32 TCGA-G4-6588-01 11 93436068 93436068 G A KIAA1731 Missense_Mutation p.G1860D 0.39 deleterious(0) probably_damaging(0.984) TCGA-G4-6588-01 11 93808391 93808391 A G HEPHL1 Missense_Mutation p.K519R 0.30 tolerated(0.83) benign(0.008) TCGA-G4-6588-01 11 93815686 93815686 A G HEPHL1 Missense_Mutation p.S607G 0.30 tolerated(0.33) benign(0) TCGA-G4-6588-01 11 94532835 94532835 C T AMOTL1 Missense_Mutation p.P160L 0.32 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 11 9549187 9549189 AGA - ZNF143 3'UTR 0.39 TCGA-G4-6588-01 11 95583862 95583862 G C MTMR2 Missense_Mutation p.L236V 0.29 tolerated(0.12) benign(0.015) TCGA-G4-6588-01 11 95825242 95825242 C T MAML2 Silent p.Q651Q 0.29 TCGA-G4-6588-01 12 101779980 101779980 G - UTP20 3'UTR 0.24 TCGA-G4-6588-01 12 105570739 105570739 A G APPL2 Missense_Mutation p.V582A 0.27 deleterious(0.02) benign(0.138) TCGA-G4-6588-01 12 105597552 105597552 A T APPL2 Missense_Mutation p.F217L 0.46 deleterious(0.03) benign(0.01) TCGA-G4-6588-01 12 10783769 10783769 G A STYK1 Missense_Mutation p.P109L 0.23 deleterious(0) probably_damaging(0.925) TCGA-G4-6588-01 12 108128014 108128014 C T PRDM4 Silent p.A793A 0.27 TCGA-G4-6588-01 12 108604057 108604057 G T WSCD2 Missense_Mutation p.Q219H 0.48 tolerated(0.06) benign(0.332) TCGA-G4-6588-01 12 108685529 108685529 C T CMKLR1 3'UTR 0.40 TCGA-G4-6588-01 12 108912809 108912809 A G FICD Missense_Mutation p.T312A 0.30 deleterious(0.01) possibly_damaging(0.89) TCGA-G4-6588-01 12 109194614 109194614 C A SSH1 Nonsense_Mutation p.E364* 0.27 TCGA-G4-6588-01 12 109702102 109702104 CTG - ACACB In_Frame_Del p.L2287del 0.35 TCGA-G4-6588-01 12 10999790 10999790 G A PRR4 Nonsense_Mutation p.R93* 0.33 TCGA-G4-6588-01 12 110370961 110370961 C T GIT2 Missense_Mutation p.R701H 0.18 deleterious(0) benign(0.409) TCGA-G4-6588-01 12 110475396 110475396 C T ANKRD13A 3'UTR 0.42 TCGA-G4-6588-01 12 11138751 11138751 A G TAS2R50 Silent p.L237L 0.10 TCGA-G4-6588-01 12 11174389 11174389 A G TAS2R19 Missense_Mutation p.L261P 0.22 tolerated(0.06) benign(0.049) TCGA-G4-6588-01 12 111747864 111747864 C T CUX2 Silent p.D426D 0.36 TCGA-G4-6588-01 12 111886126 111886126 C A SH2B3 3'UTR 0.29 TCGA-G4-6588-01 12 112630518 112630518 G T HECTD4 Silent p.G2900G 0.34 TCGA-G4-6588-01 12 112690349 112690349 G - HECTD4 Intron 0.34 TCGA-G4-6588-01 12 114393005 114393005 T C RBM19 Silent p.P284P 0.40 TCGA-G4-6588-01 12 114793736 114793736 G - TBX5 Frame_Shift_Del p.S387Afs*7 0.45 TCGA-G4-6588-01 12 116428971 116428971 C T MED13L Missense_Mutation p.R1263Q 0.30 tolerated(0.3) unknown(0) TCGA-G4-6588-01 12 120172013 120172013 C T CIT Silent p.R1102R 0.32 TCGA-G4-6588-01 12 120575841 120575843 GTT - GCN1L1 In_Frame_Del p.T2086del 0.27 TCGA-G4-6588-01 12 120582538 120582538 G T GCN1L1 Silent p.R1753R 0.33 TCGA-G4-6588-01 12 120650171 120650171 C T PXN Silent p.K588K 0.39 TCGA-G4-6588-01 12 121434367 121434367 C - HNF1A Frame_Shift_Del p.P379Lfs*5 0.41 TCGA-G4-6588-01 12 121858089 121858089 C T RNF34 Silent p.D227D 0.15 TCGA-G4-6588-01 12 122079468 122079468 G T ORAI1 Missense_Mutation p.E277D 0.40 deleterious(0.03) possibly_damaging(0.679) TCGA-G4-6588-01 12 122218895 122218895 C T RHOF Silent p.T118T 0.41 TCGA-G4-6588-01 12 122748169 122748169 A - VPS33A Frame_Shift_Del p.F82Lfs*6 0.43 TCGA-G4-6588-01 12 122964858 122964858 T C ZCCHC8 Missense_Mutation p.D340G 0.20 tolerated(0.39) benign(0.004) TCGA-G4-6588-01 12 123276666 123276666 C T CCDC62 Missense_Mutation p.T257I 0.22 deleterious(0.04) benign(0.009) TCGA-G4-6588-01 12 124293477 124293477 C T DNAH10 Missense_Mutation p.R923W 0.38 possibly_damaging(0.587) TCGA-G4-6588-01 12 124829248 124829248 G A NCOR2 Missense_Mutation p.R1537W 0.55 probably_damaging(0.986) TCGA-G4-6588-01 12 124841289 124841289 G - NCOR2 Frame_Shift_Del p.P1047Lfs*16 0.41 TCGA-G4-6588-01 12 125834832 125834832 C T TMEM132B Missense_Mutation p.T296M 0.38 deleterious(0.02) benign(0.03) TCGA-G4-6588-01 12 129278544 129278544 C T SLC15A4 3'UTR 0.37 TCGA-G4-6588-01 12 12978978 12978978 C T DDX47 Silent p.S360S 0.34 TCGA-G4-6588-01 12 131476798 131476798 A G GPR133 Missense_Mutation p.Y276C 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-G4-6588-01 12 132394804 132394804 T - ULK1 Frame_Shift_Del p.H274Ifs*109 0.27 TCGA-G4-6588-01 12 132400971 132400971 C - ULK1 Frame_Shift_Del p.S638Afs*9 0.29 TCGA-G4-6588-01 12 13243491 13243491 G A GSG1 Missense_Mutation p.R104W 0.45 deleterious(0) possibly_damaging(0.84) TCGA-G4-6588-01 12 132474602 132474602 G A EP400 Missense_Mutation p.A835T 0.14 unknown(0) TCGA-G4-6588-01 12 132475981 132475981 G A EP400 Missense_Mutation p.A887T 0.37 unknown(0) TCGA-G4-6588-01 12 132551423 132551423 G A EP400 Silent p.P2886P 0.24 TCGA-G4-6588-01 12 132635525 132635525 G - NOC4L Splice_Site p.X303_splice 0.27 TCGA-G4-6588-01 12 133198368 133198368 G A P2RX2 Missense_Mutation p.R435H 0.12 tolerated(0.56) benign(0.063) TCGA-G4-6588-01 12 133209298 133209298 C - POLE Frame_Shift_Del p.A2030Pfs*18 0.16 TCGA-G4-6588-01 12 133294152 133294152 T C PGAM5 Splice_Site p.X166_splice 0.29 TCGA-G4-6588-01 12 1675930 1675930 C - FBXL14 Frame_Shift_Del p.G414Efs*58 0.28 TCGA-G4-6588-01 12 21960305 21960305 G T ABCC9 Missense_Mutation p.A1475E 0.29 deleterious(0) probably_damaging(0.985) TCGA-G4-6588-01 12 26709291 26709291 C A ITPR2 Missense_Mutation p.L1613F 0.28 tolerated(0.12) probably_damaging(0.988) TCGA-G4-6588-01 12 2692016 2692016 T C CACNA1C Missense_Mutation p.V711A 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-G4-6588-01 12 271100 271100 G A IQSEC3 Missense_Mutation p.D818N 0.34 tolerated(0.25) probably_damaging(0.989) TCGA-G4-6588-01 12 27475447 27475447 C T STK38L 3'UTR 0.23 TCGA-G4-6588-01 12 28459814 28459814 A - CCDC91 Frame_Shift_Del p.I138Ffs*25 0.20 TCGA-G4-6588-01 12 29604459 29604459 A - OVCH1 Frame_Shift_Del p.T860Hfs*46 0.21 TCGA-G4-6588-01 12 32786613 32786613 G T FGD4 Missense_Mutation p.G631V 0.22 deleterious(0.02) probably_damaging(0.989) TCGA-G4-6588-01 12 32900296 32900296 A C YARS2 Missense_Mutation p.Y426D 0.26 tolerated(0.11) benign(0.028) TCGA-G4-6588-01 12 39763922 39763922 C T KIF21A Silent p.E62E 0.29 TCGA-G4-6588-01 12 41966554 41966554 A G PDZRN4 Missense_Mutation p.E658G 0.21 tolerated(0.08) benign(0.006) TCGA-G4-6588-01 12 44176250 44176250 G A IRAK4 Missense_Mutation p.R361H 0.29 deleterious(0) possibly_damaging(0.814) TCGA-G4-6588-01 12 49086999 49086999 G T CCNT1 Silent p.S666S 0.36 TCGA-G4-6588-01 12 49176859 49176859 C T ADCY6 Missense_Mutation p.R120H 0.39 tolerated(0.14) benign(0.001) TCGA-G4-6588-01 12 49427667 49427667 C T KMT2D Silent p.Q3607Q 0.29 TCGA-G4-6588-01 12 49432515 49432515 G A KMT2D Missense_Mutation p.A2875V 0.29 probably_damaging(0.989) TCGA-G4-6588-01 12 49438549 49438549 G A KMT2D Silent p.T1647T 0.16 TCGA-G4-6588-01 12 49919821 49919821 G T SPATS2 Missense_Mutation p.G474V 0.26 deleterious(0.01) possibly_damaging(0.548) TCGA-G4-6588-01 12 49937254 49937254 G A KCNH3 Missense_Mutation p.G259D 0.41 tolerated(0.36) benign(0.045) TCGA-G4-6588-01 12 49953258 49953258 C T MCRS1 Missense_Mutation p.R368Q 0.24 deleterious(0.04) possibly_damaging(0.887) TCGA-G4-6588-01 12 49994341 49994341 G T FAM186B Missense_Mutation p.P361Q 0.26 tolerated(0.21) benign(0.226) TCGA-G4-6588-01 12 50025243 50025243 G A PRPF40B Silent p.Q48Q 0.32 TCGA-G4-6588-01 12 50027750 50027750 C - PRPF40B Frame_Shift_Del p.T231Pfs*79 0.28 TCGA-G4-6588-01 12 50036078 50036078 C T PRPF40B Missense_Mutation p.R649W 0.46 deleterious(0) probably_damaging(0.988) TCGA-G4-6588-01 12 50050953 50050953 C T FMNL3 Missense_Mutation p.R209H 0.22 deleterious(0) probably_damaging(0.956) TCGA-G4-6588-01 12 50185813 50185813 G A NCKAP5L Nonsense_Mutation p.R1272* 0.50 TCGA-G4-6588-01 12 50197721 50197721 C G NCKAP5L Missense_Mutation p.R36P 0.17 deleterious(0) probably_damaging(0.927) TCGA-G4-6588-01 12 5020976 5020976 G A KCNA1 Silent p.L144L 0.40 TCGA-G4-6588-01 12 50349194 50349194 G A AQP2 Missense_Mutation p.G207R 0.24 deleterious(0) possibly_damaging(0.894) TCGA-G4-6588-01 12 51079615 51079615 G T DIP2B Splice_Site p.X440_splice 0.21 TCGA-G4-6588-01 12 5153620 5153620 G A KCNA5 Missense_Mutation p.G103S 0.26 tolerated(0.71) benign(0.026) TCGA-G4-6588-01 12 52188416 52188416 T C SCN8A Missense_Mutation p.S1596P 0.32 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 12 52681819 52681819 G A KRT81 Silent p.D283D 0.38 TCGA-G4-6588-01 12 52940100 52940100 T C KRT71 Missense_Mutation p.Y432C 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 12 52946436 52946436 G T KRT71 Silent p.A142A 0.26 TCGA-G4-6588-01 12 53343416 53343416 C T KRT18 Intron 0.31 TCGA-G4-6588-01 12 53451871 53451872 - A TENC1 Frame_Shift_Ins p.G372Rfs*43 0.32 TCGA-G4-6588-01 12 53452903 53452903 C - TENC1 Frame_Shift_Del p.P505Rfs*25 0.41 TCGA-G4-6588-01 12 53901225 53901225 G C NPFF Missense_Mutation p.L12V 0.33 tolerated(0.34) benign(0.026) TCGA-G4-6588-01 12 54379644 54379645 - C HOXC10 Frame_Shift_Ins p.K203Qfs*11 0.29 TCGA-G4-6588-01 12 54404877 54404877 G - HOXC8 Frame_Shift_Del p.R149Gfs*16 0.32 TCGA-G4-6588-01 12 55356646 55356646 G A TESPA1 Missense_Mutation p.P346S 0.37 tolerated_low_confidence(0.17) benign(0.01) TCGA-G4-6588-01 12 55368382 55368382 T C TESPA1 5'UTR 0.10 TCGA-G4-6588-01 12 55420695 55420695 C A NEUROD4 Missense_Mutation p.L158M 0.12 deleterious(0.02) probably_damaging(0.961) TCGA-G4-6588-01 12 56188597 56188597 G A SARNP Missense_Mutation p.A124V 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-G4-6588-01 12 56351427 56351427 G A PMEL Silent p.S220S 0.25 TCGA-G4-6588-01 12 56547617 56547617 C A MYL6B Intron 0.31 TCGA-G4-6588-01 12 57009177 57009178 - C BAZ2A Frame_Shift_Ins p.Q120Tfs*20 0.34 TCGA-G4-6588-01 12 57059796 57059796 C T PTGES3 Intron 0.31 TCGA-G4-6588-01 12 57114306 57114306 C A NACA Silent p.V336V 0.32 TCGA-G4-6588-01 12 57548269 57548269 T - LRP1 Frame_Shift_Del p.F339Sfs*71 0.26 TCGA-G4-6588-01 12 57579505 57579505 A G LRP1 Missense_Mutation p.N2219D 0.22 benign(0.26) TCGA-G4-6588-01 12 57603918 57603918 C T LRP1 Silent p.C4182C 0.34 TCGA-G4-6588-01 12 57918093 57918093 G - MBD6 Frame_Shift_Del p.G4Afs*79 0.24 TCGA-G4-6588-01 12 57919174 57919175 - C MBD6 Frame_Shift_Ins p.S144Lfs*15 0.10 TCGA-G4-6588-01 12 57919621 57919621 G A MBD6 Silent p.V290V 0.36 TCGA-G4-6588-01 12 57922313 57922313 C T MBD6 Silent p.P930P 0.29 TCGA-G4-6588-01 12 60098766 60098766 T C SLC16A7 Missense_Mutation p.S62P 0.35 tolerated(0.14) probably_damaging(0.997) TCGA-G4-6588-01 12 6166173 6166173 C T VWF Missense_Mutation p.V599I 0.53 tolerated(0.08) possibly_damaging(0.861) TCGA-G4-6588-01 12 62919794 62919794 G A MON2 Missense_Mutation p.G438S 0.30 tolerated(0.19) benign(0.031) TCGA-G4-6588-01 12 6457045 6457045 C - SCNN1A Frame_Shift_Del p.*729Efs*25 0.37 TCGA-G4-6588-01 12 64818918 64818918 G T XPOT Missense_Mutation p.G470C 0.34 deleterious(0.01) probably_damaging(0.922) TCGA-G4-6588-01 12 65138647 65138647 T C GNS Missense_Mutation p.N189S 0.36 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 12 6561617 6561617 A G TAPBPL Intron 0.30 TCGA-G4-6588-01 12 66308734 66308734 C T HMGA2 Intron 0.24 TCGA-G4-6588-01 12 6657974 6657974 C - IFFO1 Frame_Shift_Del p.R367Gfs*47 0.40 TCGA-G4-6588-01 12 6692328 6692328 G A CHD4 Intron 0.33 TCGA-G4-6588-01 12 6707552 6707552 A G CHD4 Missense_Mutation p.W508R 0.30 deleterious(0.01) possibly_damaging(0.861) TCGA-G4-6588-01 12 6749536 6749536 G T ACRBP Silent p.A410A 0.39 TCGA-G4-6588-01 12 6804305 6804305 A G PIANP Intron 0.34 TCGA-G4-6588-01 12 68696520 68696520 T - MDM1 Frame_Shift_Del p.I618Ffs*46 0.29 TCGA-G4-6588-01 12 6933474 6933474 C T GPR162 Missense_Mutation p.A137V 0.18 tolerated(0.19) possibly_damaging(0.682) TCGA-G4-6588-01 12 6981724 6981724 C T SPSB2 Silent p.P114P 0.20 TCGA-G4-6588-01 12 70824288 70824288 G A KCNMB4 Missense_Mutation p.R163H 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-G4-6588-01 12 72314546 72314548 TCT - TBC1D15 In_Frame_Del p.L565del 0.21 TCGA-G4-6588-01 12 7281300 7281300 T C RBP5 Silent p.L24L 0.41 TCGA-G4-6588-01 12 7295889 7295889 G A CLSTN3 Missense_Mutation p.R610H 0.23 tolerated(0.24) benign(0.004) TCGA-G4-6588-01 12 7480937 7480937 G A ACSM4 Missense_Mutation p.V571I 0.24 tolerated(0.08) benign(0.009) TCGA-G4-6588-01 12 7637958 7637958 C T CD163 Missense_Mutation p.R838H 0.28 tolerated(0.13) benign(0.365) TCGA-G4-6588-01 12 76424919 76424919 C T PHLDA1 Silent p.Q201Q 0.42 TCGA-G4-6588-01 12 77244900 77244901 - T ZDHHC17 3'UTR 0.24 TCGA-G4-6588-01 12 78513472 78513472 G A NAV3 Missense_Mutation p.V1166I 0.38 tolerated(0.48) possibly_damaging(0.612) TCGA-G4-6588-01 12 8205522 8205522 G A FOXJ2 3'UTR 0.33 TCGA-G4-6588-01 12 82746947 82746947 T - CCDC59 Frame_Shift_Del p.I237Yfs*13 0.26 TCGA-G4-6588-01 12 82752514 82752514 C T METTL25 Missense_Mutation p.T57I 0.27 deleterious(0.04) benign(0.025) TCGA-G4-6588-01 12 86199239 86199239 C T RASSF9 Missense_Mutation p.M183I 0.30 tolerated(0.21) benign(0.124) TCGA-G4-6588-01 12 88505594 88505594 A G CEP290 Silent p.S698S 0.30 TCGA-G4-6588-01 12 88570068 88570068 C T TMTC3 Silent p.Y468Y 0.31 TCGA-G4-6588-01 12 89917212 89917212 C T GALNT4 Missense_Mutation p.R372H 0.31 tolerated(0.18) probably_damaging(0.999) TCGA-G4-6588-01 12 9246118 9246118 G A A2M Missense_Mutation p.T728M 0.28 tolerated(0.1) benign(0.029) TCGA-G4-6588-01 12 92539312 92539312 G - BTG1 5'UTR 0.34 TCGA-G4-6588-01 12 94563012 94563012 C A PLXNC1 Silent p.T382T 0.25 TCGA-G4-6588-01 12 94975944 94975944 C A TMCC3 Missense_Mutation p.R150M 0.10 deleterious(0.03) probably_damaging(0.964) TCGA-G4-6588-01 12 95603469 95603469 T - FGD6 Frame_Shift_Del p.S531Vfs*6 0.28 TCGA-G4-6588-01 12 95897881 95897881 C T METAP2 Missense_Mutation p.A303V 0.09 deleterious(0.05) benign(0.243) TCGA-G4-6588-01 12 95927116 95927116 A G USP44 Missense_Mutation p.L306P 0.35 tolerated(0.08) benign(0.346) TCGA-G4-6588-01 12 96107000 96107000 G A NTN4 Silent p.N327N 0.35 TCGA-G4-6588-01 12 96653534 96653534 C T ELK3 Missense_Mutation p.P343L 0.19 deleterious(0.01) benign(0.2) TCGA-G4-6588-01 12 98909769 98909769 C A TMPO Missense_Mutation p.L42M 0.34 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-G4-6588-01 12 99223051 99223051 G A ANKS1B Silent p.D989D 0.30 TCGA-G4-6588-01 12 994408 994408 G A WNK1 Missense_Mutation p.A1480T 0.27 tolerated_low_confidence(0.17) benign(0.041) TCGA-G4-6588-01 13 108862070 108862070 T C LIG4 Missense_Mutation p.Y516C 0.19 tolerated(0.12) possibly_damaging(0.886) TCGA-G4-6588-01 13 109472755 109472755 C T MYO16 Missense_Mutation p.A291V 0.22 deleterious(0) benign(0.096) TCGA-G4-6588-01 13 110434878 110434878 C T IRS2 Missense_Mutation p.A1175T 0.33 deleterious(0.02) probably_damaging(0.98) TCGA-G4-6588-01 13 110802749 110802749 C T COL4A1 Silent p.T1657T 0.42 TCGA-G4-6588-01 13 111294706 111294706 C T CARS2 Missense_Mutation p.D527N 0.34 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 13 111294707 111294707 G A CARS2 Silent p.C526C 0.29 TCGA-G4-6588-01 13 111372600 111372600 T C ING1 3'UTR 0.27 TCGA-G4-6588-01 13 111932655 111932655 C T ARHGEF7 Missense_Mutation p.L536F 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-G4-6588-01 13 112723397 112723397 T - SOX1 3'UTR 0.23 TCGA-G4-6588-01 13 113740565 113740565 T C MCF2L Splice_Site p.X791_splice 0.08 TCGA-G4-6588-01 13 113963966 113963966 C A LAMP1 Silent p.T64T 0.11 TCGA-G4-6588-01 13 114175031 114175031 C T TMCO3 Silent p.G442G 0.33 TCGA-G4-6588-01 13 114322290 114322290 G T GRK1 Missense_Mutation p.G197W 0.34 deleterious(0.01) probably_damaging(1) TCGA-G4-6588-01 13 19751278 19751278 T C TUBA3C Missense_Mutation p.Y282C 0.34 deleterious_low_confidence(0.03) probably_damaging(0.936) TCGA-G4-6588-01 13 20208097 20208098 - G MPHOSPH8 Frame_Shift_Ins 0.23 TCGA-G4-6588-01 13 21381623 21381623 C T XPO4 Missense_Mutation p.G597E 0.10 tolerated(0.09) possibly_damaging(0.521) TCGA-G4-6588-01 13 21742280 21742280 A G SKA3 Missense_Mutation p.L197P 0.32 tolerated(0.24) benign(0.009) TCGA-G4-6588-01 13 23904749 23904750 - G SACS Frame_Shift_Ins p.S4423Ffs*42 0.22 TCGA-G4-6588-01 13 24242832 24242832 A G TNFRSF19 Missense_Mutation p.N281D 0.39 tolerated_low_confidence(0.09) benign(0.009) TCGA-G4-6588-01 13 25745386 25745386 G A AMER2 Silent p.R124R 0.31 TCGA-G4-6588-01 13 25825856 25825856 T A MTMR6 Silent p.V512V 0.19 TCGA-G4-6588-01 13 26620640 26620640 G A SHISA2 3'UTR 0.38 TCGA-G4-6588-01 13 26621162 26621162 A T SHISA2 Missense_Mutation p.V126D 0.35 deleterious(0) probably_damaging(0.986) TCGA-G4-6588-01 13 28494291 28494291 C A PDX1 Missense_Mutation p.Q6K 0.32 tolerated_low_confidence(0.08) benign(0.016) TCGA-G4-6588-01 13 29005443 29005443 T - FLT1 Frame_Shift_Del p.N273Ifs*6 0.17 TCGA-G4-6588-01 13 29287673 29287673 T C SLC46A3 Silent p.K68K 0.37 TCGA-G4-6588-01 13 29600468 29600468 A G MTUS2 Missense_Mutation p.T555A 0.31 tolerated(0.14) benign(0.015) TCGA-G4-6588-01 13 30002827 30002827 A G MTUS2 Intron 0.30 TCGA-G4-6588-01 13 32913719 32913719 A C BRCA2 Missense_Mutation p.S1743R 0.18 tolerated(0.33) benign(0.017) TCGA-G4-6588-01 13 37582955 37582955 G A EXOSC8 Missense_Mutation p.C233Y 0.10 deleterious(0) probably_damaging(0.927) TCGA-G4-6588-01 13 38160338 38160338 G A POSTN Missense_Mutation p.A278V 0.24 deleterious(0.02) probably_damaging(0.977) TCGA-G4-6588-01 13 39265655 39265655 G A FREM2 Missense_Mutation p.D1392N 0.31 deleterious(0) probably_damaging(0.995) TCGA-G4-6588-01 13 39266514 39266514 T C FREM2 Missense_Mutation p.M1678T 0.42 tolerated(0.18) benign(0.002) TCGA-G4-6588-01 13 39438633 39438633 C T FREM2 Missense_Mutation p.R2625C 0.32 deleterious(0) probably_damaging(0.981) TCGA-G4-6588-01 13 41400669 41400669 A G TPTE2P5 RNA 0.38 TCGA-G4-6588-01 13 41768057 41768057 T C KBTBD7 Missense_Mutation p.T113A 0.24 tolerated(0.16) probably_damaging(0.944) TCGA-G4-6588-01 13 42275643 42275643 C A VWA8 Missense_Mutation p.Q1083H 0.08 tolerated(0.07) benign(0.014) TCGA-G4-6588-01 13 42361640 42361641 - T VWA8 Frame_Shift_Ins p.N701Kfs*12 0.16 TCGA-G4-6588-01 13 44463025 44463025 G T LACC1 Missense_Mutation p.R347M 0.24 deleterious(0.01) possibly_damaging(0.656) TCGA-G4-6588-01 13 45965022 45965022 C T SLC25A30 3'Flank 0.31 TCGA-G4-6588-01 13 46425645 46425645 G - SIAH3 Frame_Shift_Del p.T41Hfs*4 0.21 TCGA-G4-6588-01 13 46787239 46787239 A - LRRC63 Frame_Shift_Del p.T26Pfs*14 0.22 TCGA-G4-6588-01 13 46841037 46841037 T C LRRC63 Missense_Mutation p.F494L 0.29 tolerated(0.09) possibly_damaging(0.624) TCGA-G4-6588-01 13 47365499 47365499 T C ESD Missense_Mutation p.K17R 0.22 tolerated(0.48) benign(0.094) TCGA-G4-6588-01 13 48955504 48955504 C T RB1 Silent p.G540G 0.29 TCGA-G4-6588-01 13 49089392 49089392 T - RCBTB2 Frame_Shift_Del p.I100* 0.29 TCGA-G4-6588-01 13 49822156 49822156 G T CDADC1 5'UTR 0.32 TCGA-G4-6588-01 13 49951197 49951197 G A CAB39L Missense_Mutation p.P61L 0.29 deleterious(0) possibly_damaging(0.82) TCGA-G4-6588-01 13 58207245 58207245 G T PCDH17 Missense_Mutation p.G189C 0.34 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 13 58298748 58298748 C T PCDH17 Missense_Mutation p.P934S 0.25 tolerated(0.48) benign(0.017) TCGA-G4-6588-01 13 67800756 67800756 G A PCDH9 Missense_Mutation p.A606V 0.10 tolerated(0.32) benign(0.122) TCGA-G4-6588-01 13 75900473 75900473 G A TBC1D4 Silent p.S631S 0.36 TCGA-G4-6588-01 13 77651459 77651459 T C MYCBP2 Missense_Mutation p.I3812V 0.27 benign(0.001) TCGA-G4-6588-01 13 77672277 77672277 C T MYCBP2 Silent p.S2966S 0.33 TCGA-G4-6588-01 13 78214895 78214895 T C SCEL Silent p.I641I 0.22 TCGA-G4-6588-01 13 78492443 78492443 G A EDNRB Missense_Mutation p.P179L 0.39 tolerated(0.21) benign(0.002) TCGA-G4-6588-01 13 79945239 79945239 G T RBM26 Missense_Mutation p.P159T 0.27 tolerated(0.44) unknown(0) TCGA-G4-6588-01 13 86369205 86369206 - A SLITRK6 Frame_Shift_Ins p.S480Ffs*7 0.19 TCGA-G4-6588-01 13 88331246 88331247 GC TGTAGT SLITRK5 3'UTR 0.17 TCGA-G4-6588-01 13 92002857 92002858 CA - MIR17HG RNA 0.25 TCGA-G4-6588-01 13 96579574 96579574 C T UGGT2 Missense_Mutation p.R665H 0.33 tolerated(0.36) benign(0) TCGA-G4-6588-01 13 99064274 99064274 A G FARP1 Silent p.Q604Q 0.44 TCGA-G4-6588-01 13 99100530 99100530 C T FARP1 Nonsense_Mutation p.R1033* 0.37 TCGA-G4-6588-01 14 100847632 100847632 C T WDR25 Missense_Mutation p.A124V 0.32 tolerated_low_confidence(0.13) benign(0.025) TCGA-G4-6588-01 14 101347402 101347402 G A RTL1 Missense_Mutation p.R1242C 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G4-6588-01 14 101350521 101350521 G A RTL1 Missense_Mutation p.A202V 0.36 tolerated(0.29) benign(0) TCGA-G4-6588-01 14 102463449 102463449 C T DYNC1H1 Silent p.I1214I 0.31 TCGA-G4-6588-01 14 102472491 102472491 G - DYNC1H1 Frame_Shift_Del p.G1902Vfs*27 0.15 TCGA-G4-6588-01 14 103568588 103568588 G A EXOC3L4 Silent p.A176A 0.50 TCGA-G4-6588-01 14 104642156 104642156 C T KIF26A Missense_Mutation p.R1011W 0.44 deleterious(0) possibly_damaging(0.635) TCGA-G4-6588-01 14 104642576 104642576 G A KIF26A Missense_Mutation p.G1151S 0.30 tolerated(1) benign(0.014) TCGA-G4-6588-01 14 104645064 104645064 G A KIF26A Missense_Mutation p.R1763H 0.28 deleterious(0.01) possibly_damaging(0.72) TCGA-G4-6588-01 14 105351751 105351751 G A CEP170B Missense_Mutation p.A606T 0.47 tolerated(0.09) benign(0.359) TCGA-G4-6588-01 14 105359364 105359364 C T CEP170B Silent p.H1310H 0.22 TCGA-G4-6588-01 14 105399139 105399139 G A PLD4 Silent p.T453T 0.21 TCGA-G4-6588-01 14 105461124 105461124 G A C14orf79 3'UTR 0.22 TCGA-G4-6588-01 14 105858023 105858023 G A PACS2 Silent p.P725P 0.45 TCGA-G4-6588-01 14 105995686 105995686 G A TMEM121 Missense_Mutation p.R172H 0.33 deleterious(0.04) possibly_damaging(0.583) TCGA-G4-6588-01 14 105996268 105996268 C T TMEM121 3'UTR 0.45 TCGA-G4-6588-01 14 106641600 106641600 A G IGHV1-18 Missense_Mutation p.L105P 0.33 deleterious(0) probably_damaging(0.987) TCGA-G4-6588-01 14 106641606 106641606 C A IGHV1-18 Missense_Mutation p.R103M 0.34 deleterious(0) possibly_damaging(0.699) TCGA-G4-6588-01 14 107131180 107131180 G T IGHV3-66 Silent p.V67V 0.07 TCGA-G4-6588-01 14 19563232 19563232 T C POTEG Intron 0.54 TCGA-G4-6588-01 14 20781759 20781759 G A CCNB1IP1 Missense_Mutation p.R167C 0.32 deleterious(0.03) benign(0.081) TCGA-G4-6588-01 14 20784403 20784403 C T CCNB1IP1 Missense_Mutation p.A94T 0.25 tolerated(0.11) benign(0.376) TCGA-G4-6588-01 14 20871902 20871902 G - TEP1 Frame_Shift_Del p.R392Afs*22 0.26 TCGA-G4-6588-01 14 21491453 21491453 G A NDRG2 Nonsense_Mutation p.Q8* 0.30 TCGA-G4-6588-01 14 21833041 21833041 T - SUPT16H Frame_Shift_Del p.K393Sfs*29 0.24 TCGA-G4-6588-01 14 21862171 21862171 C T CHD8 Missense_Mutation p.R1928Q 0.32 tolerated(0.16) benign(0.211) TCGA-G4-6588-01 14 23058005 23058005 G T DAD1 Missense_Mutation p.T20N 0.29 deleterious(0) probably_damaging(0.986) TCGA-G4-6588-01 14 23874859 23874859 G A MYH6 Missense_Mutation p.R108C 0.25 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 14 24601497 24601497 C T FITM1 Missense_Mutation p.T115I 0.08 tolerated(0.07) possibly_damaging(0.588) TCGA-G4-6588-01 14 24641675 24641675 G T REC8 Splice_Site 0.54 TCGA-G4-6588-01 14 24641972 24641972 T G REC8 Missense_Mutation p.V36G 0.25 deleterious(0) possibly_damaging(0.859) TCGA-G4-6588-01 14 24710311 24710311 C T TINF2 Silent p.V173V 0.49 TCGA-G4-6588-01 14 24738748 24738748 G - RABGGTA Frame_Shift_Del p.Q194Sfs*43 0.26 TCGA-G4-6588-01 14 24769812 24769812 C A NOP9 Missense_Mutation p.A149D 0.29 deleterious(0) possibly_damaging(0.783) TCGA-G4-6588-01 14 24808383 24808383 C T RIPK3 Silent p.S103S 0.24 TCGA-G4-6588-01 14 28734314 28734314 C T BNIP3P1 RNA 0.29 TCGA-G4-6588-01 14 29237046 29237046 C T FOXG1 Silent p.N187N 0.20 TCGA-G4-6588-01 14 29237859 29237859 C A FOXG1 Silent p.P458P 0.32 TCGA-G4-6588-01 14 31775979 31775979 G A AL136418.1 5'Flank 0.29 TCGA-G4-6588-01 14 31806723 31806723 G A HEATR5A Missense_Mutation p.A816V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6588-01 14 35182888 35182888 T C CFL2 5'UTR 0.30 TCGA-G4-6588-01 14 35264057 35264057 G A BAZ1A Missense_Mutation p.P421S 0.24 deleterious(0) probably_damaging(0.968) TCGA-G4-6588-01 14 35736064 35736064 T - KIAA0391 Frame_Shift_Del p.F471Lfs*30 0.24 TCGA-G4-6588-01 14 38061178 38061178 G T FOXA1 Missense_Mutation p.Q271K 0.38 tolerated(1) benign(0.003) TCGA-G4-6588-01 14 38296454 38296454 G A TTC6 Missense_Mutation p.M1727I 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6588-01 14 38311396 38311396 A T TTC6 Missense_Mutation p.N1854I 0.40 deleterious(0.02) probably_damaging(0.964) TCGA-G4-6588-01 14 38725330 38725330 T C CLEC14A 5'UTR 0.24 TCGA-G4-6588-01 14 39703205 39703205 T - MIA2 5'UTR 0.20 TCGA-G4-6588-01 14 42356253 42356253 C T LRFN5 Missense_Mutation p.A142V 0.31 deleterious(0) probably_damaging(0.993) TCGA-G4-6588-01 14 52741517 52741517 C A PTGDR Missense_Mutation p.D305E 0.36 deleterious(0.03) possibly_damaging(0.463) TCGA-G4-6588-01 14 53326363 53326363 G A FERMT2 Silent p.S606S 0.31 TCGA-G4-6588-01 14 54894394 54894394 A - CNIH1 3'UTR 0.39 TCGA-G4-6588-01 14 55034772 55034772 G A SAMD4A Silent p.E46E 0.35 TCGA-G4-6588-01 14 58605755 58605755 G A C14orf37 Missense_Mutation p.R108C 0.32 deleterious(0.02) benign(0.056) TCGA-G4-6588-01 14 59112935 59112935 G A DACT1 Missense_Mutation p.V532M 0.30 tolerated(0.11) benign(0.014) TCGA-G4-6588-01 14 61180401 61180401 A G SIX4 Silent p.P690P 0.28 TCGA-G4-6588-01 14 64460567 64460567 T C SYNE2 Silent p.I887I 0.20 TCGA-G4-6588-01 14 64463847 64463847 G A SYNE2 Silent p.Q1041Q 0.37 TCGA-G4-6588-01 14 65008785 65008785 C T HSPA2 Silent p.I406I 0.40 TCGA-G4-6588-01 14 65268473 65268473 G A SPTB Missense_Mutation p.R216W 0.24 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 14 65289747 65289747 G T SPTB Silent p.R22R 0.32 TCGA-G4-6588-01 14 68222763 68222763 T C ZFYVE26 Missense_Mutation p.T2230A 0.19 tolerated(0.23) benign(0.017) TCGA-G4-6588-01 14 69256404 69256404 A G ZFP36L1 Missense_Mutation p.M288T 0.26 tolerated(0.14) benign(0.248) TCGA-G4-6588-01 14 70925082 70925082 A G ADAM21 Missense_Mutation p.Q289R 0.29 tolerated(1) benign(0.001) TCGA-G4-6588-01 14 71570176 71570176 A G PCNX Missense_Mutation p.N1962S 0.34 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 14 72055565 72055565 A G SIPA1L1 Missense_Mutation p.T326A 0.35 tolerated(0.53) benign(0.039) TCGA-G4-6588-01 14 73945358 73945358 A - HEATR4 Frame_Shift_Del p.S1012Lfs*? 0.27 TCGA-G4-6588-01 14 74179661 74179661 C T PNMA1 Missense_Mutation p.E228K 0.27 tolerated(0.08) possibly_damaging(0.496) TCGA-G4-6588-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.39 TCGA-G4-6588-01 14 74409118 74409118 C T FAM161B Missense_Mutation p.R472H 0.30 tolerated(0.31) benign(0.004) TCGA-G4-6588-01 14 74754518 74754518 T C ABCD4 Missense_Mutation p.Y544C 0.21 deleterious(0) possibly_damaging(0.762) TCGA-G4-6588-01 14 75515675 75515675 A - MLH3 Frame_Shift_Del p.F228Lfs*27 0.23 TCGA-G4-6588-01 14 75938488 75938488 C T JDP2 3'Flank 0.27 TCGA-G4-6588-01 14 76012962 76012962 G A BATF Missense_Mutation p.S109N 0.16 deleterious_low_confidence(0.03) benign(0.037) TCGA-G4-6588-01 14 76045572 76045572 C T FLVCR2 Missense_Mutation p.A86V 0.31 tolerated(1) benign(0.004) TCGA-G4-6588-01 14 76248917 76248917 G A TTLL5 Splice_Site p.X868_splice 0.30 TCGA-G4-6588-01 14 79432438 79432438 C A NRXN3 Silent p.R449R 0.27 TCGA-G4-6588-01 14 81682759 81682759 T - GTF2A1 Frame_Shift_Del p.T44Lfs*7 0.26 TCGA-G4-6588-01 14 86089844 86089844 G T FLRT2 3'UTR 0.39 TCGA-G4-6588-01 14 86091356 86091356 G A FLRT2 3'UTR 0.25 TCGA-G4-6588-01 14 88412015 88412016 - A GALC Frame_Shift_Ins p.T518Yfs*4 0.24 TCGA-G4-6588-01 14 89323548 89323548 G A TTC8 Missense_Mutation p.R242H 0.31 deleterious(0) possibly_damaging(0.584) TCGA-G4-6588-01 14 90650453 90650453 A G KCNK13 Splice_Site p.X112_splice 0.32 TCGA-G4-6588-01 14 91739529 91739529 G A CCDC88C Missense_Mutation p.H1843Y 0.09 tolerated(0.63) benign(0.001) TCGA-G4-6588-01 14 92047294 92047294 T C CATSPERB Missense_Mutation p.Q1097R 0.10 tolerated(0.49) benign(0.001) TCGA-G4-6588-01 14 93649437 93649437 G A MOAP1 3'UTR 0.40 TCGA-G4-6588-01 14 94079317 94079317 G A UNC79 Missense_Mutation p.R1133Q 0.27 deleterious(0.05) probably_damaging(0.997) TCGA-G4-6588-01 14 94158130 94158130 G A UNC79 Silent p.A2298A 0.29 TCGA-G4-6588-01 14 94245529 94245529 G T PRIMA1 Silent p.S74S 0.25 TCGA-G4-6588-01 14 94700042 94700042 G A PPP4R4 Missense_Mutation p.R190H 0.13 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 14 94849577 94849577 T C SERPINA1 Intron 0.22 TCGA-G4-6588-01 14 95053952 95053952 T C SERPINA5 Missense_Mutation p.S85P 0.28 tolerated(0.05) possibly_damaging(0.889) TCGA-G4-6588-01 14 95235309 95235309 C T GSC Missense_Mutation p.E201K 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 14 96788959 96788959 T C ATG2B Missense_Mutation p.H885R 0.31 tolerated(0.52) possibly_damaging(0.888) TCGA-G4-6588-01 14 96875278 96875278 C A AK7 Silent p.P166P 0.36 TCGA-G4-6588-01 14 96954784 96954784 T - AK7 3'UTR 0.23 TCGA-G4-6588-01 14 99640961 99640961 C T BCL11B Missense_Mutation p.A738T 0.33 deleterious(0.04) possibly_damaging(0.698) TCGA-G4-6588-01 14 99967743 99967743 A G CCNK Missense_Mutation p.N190D 0.31 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 15 100271609 100271609 A G LYSMD4 Silent p.P71P 0.30 TCGA-G4-6588-01 15 100332894 100332894 C - AC090825.1 3'Flank 0.53 TCGA-G4-6588-01 15 101598346 101598346 G T LRRK1 Missense_Mutation p.R1560M 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 15 101602876 101602876 C T LRRK1 Missense_Mutation p.A1632V 0.27 tolerated(0.33) benign(0.002) TCGA-G4-6588-01 15 101872159 101872159 G A PCSK6 Missense_Mutation p.R645C 0.16 tolerated(0.07) benign(0.048) TCGA-G4-6588-01 15 102346378 102346378 T C OR4F6 Silent p.G152G 0.18 TCGA-G4-6588-01 15 22956212 22956212 C T CYFIP1 Intron 0.25 TCGA-G4-6588-01 15 27018811 27018811 G T GABRB3 5'Flank 0.19 TCGA-G4-6588-01 15 28427597 28427597 C T HERC2 Missense_Mutation p.V2963M 0.32 probably_damaging(0.989) TCGA-G4-6588-01 15 28447301 28447301 G A HERC2 Silent p.D2525D 0.33 TCGA-G4-6588-01 15 28456241 28456241 G T HERC2 Missense_Mutation p.L2326M 0.31 benign(0.15) TCGA-G4-6588-01 15 31664339 31664339 G A KLF13 Missense_Mutation p.R235H 0.39 deleterious(0) possibly_damaging(0.812) TCGA-G4-6588-01 15 31776400 31776400 G A OTUD7A Silent p.R626R 0.34 TCGA-G4-6588-01 15 32460311 32460311 C T CHRNA7 Silent p.I416I 0.24 TCGA-G4-6588-01 15 33923486 33923486 G T RYR3 Silent p.L953L 0.37 TCGA-G4-6588-01 15 34528982 34528982 C T SLC12A6 Missense_Mutation p.R990H 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 15 39545333 39545333 T A C15orf54 3'UTR 0.23 TCGA-G4-6588-01 15 40582786 40582786 G A PLCB2 Silent p.A1067A 0.09 TCGA-G4-6588-01 15 40656709 40656709 G - DISP2 Frame_Shift_Del p.A191Pfs*24 0.15 TCGA-G4-6588-01 15 40660864 40660864 G A DISP2 Missense_Mutation p.A851T 0.31 tolerated(0.15) benign(0.207) TCGA-G4-6588-01 15 41102861 41102861 G A ZFYVE19 Silent p.P244P 0.36 TCGA-G4-6588-01 15 41228506 41228506 G A DLL4 Missense_Mutation p.V441I 0.28 tolerated(1) benign(0.001) TCGA-G4-6588-01 15 41346212 41346212 T C INO80 Missense_Mutation p.N730S 0.36 tolerated(0.14) possibly_damaging(0.869) TCGA-G4-6588-01 15 41679648 41679648 A - NDUFAF1 Frame_Shift_Del p.F326Lfs*12 0.28 TCGA-G4-6588-01 15 42120375 42120375 C T JMJD7-PLA2G4B Missense_Mutation p.A18V 0.23 tolerated_low_confidence(0.25) benign(0.003) TCGA-G4-6588-01 15 42137879 42137879 C T PLA2G4B Silent p.Y698Y 0.27 TCGA-G4-6588-01 15 42150874 42150874 C T SPTBN5 Missense_Mutation p.A2718T 0.22 benign(0.036) TCGA-G4-6588-01 15 42302289 42302289 C T PLA2G4E Intron 0.47 TCGA-G4-6588-01 15 42442839 42442839 G A PLA2G4F Silent p.H246H 0.32 TCGA-G4-6588-01 15 42528573 42528573 G A TMEM87A Missense_Mutation p.R305C 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 15 42717101 42717101 T A ZNF106 Silent p.V1684V 0.10 TCGA-G4-6588-01 15 43025362 43025362 G A CDAN1 Nonsense_Mutation p.R464* 0.33 TCGA-G4-6588-01 15 43037989 43037989 G A TTBK2 3'UTR 0.30 TCGA-G4-6588-01 15 43276128 43276128 G T UBR1 Missense_Mutation p.L1373M 0.22 tolerated(0.16) benign(0.406) TCGA-G4-6588-01 15 43501571 43501571 G A EPB42 Missense_Mutation p.R275C 0.40 tolerated(0.06) probably_damaging(0.961) TCGA-G4-6588-01 15 43819040 43819040 G A MAP1A Missense_Mutation p.R1790H 0.27 benign(0.018) TCGA-G4-6588-01 15 45386383 45386383 G A DUOX2 Nonsense_Mutation p.R1538* 0.31 TCGA-G4-6588-01 15 45401050 45401050 C T DUOX2 Silent p.L445L 0.39 TCGA-G4-6588-01 15 45405200 45405200 C T DUOX2 Missense_Mutation p.E49K 0.38 tolerated(0.41) benign(0.021) TCGA-G4-6588-01 15 45444248 45444248 A G DUOX1 Missense_Mutation p.Y1064C 0.07 deleterious(0) possibly_damaging(0.664) TCGA-G4-6588-01 15 45559863 45559863 G T SLC28A2 Splice_Site p.X357_splice 0.08 TCGA-G4-6588-01 15 45660377 45660377 C T GATM Missense_Mutation p.R189H 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 15 45848476 45848476 C T RP11-96O20.2 5'Flank 0.28 TCGA-G4-6588-01 15 45951232 45951232 C A SQRDL Missense_Mutation p.S37R 0.24 tolerated(0.66) benign(0) TCGA-G4-6588-01 15 48726811 48726811 C T FBN1 Missense_Mutation p.G2199D 0.17 probably_damaging(0.987) TCGA-G4-6588-01 15 48812926 48812926 G T FBN1 Nonsense_Mutation p.C359* 0.28 TCGA-G4-6588-01 15 50578243 50578243 C T GABPB1 Intron 0.17 TCGA-G4-6588-01 15 51791627 51791627 T C DMXL2 Missense_Mutation p.D1265G 0.40 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 15 54305645 54305645 G A UNC13C Missense_Mutation p.R182Q 0.47 deleterious_low_confidence(0) benign(0.44) TCGA-G4-6588-01 15 55670515 55670515 T G CCPG1 Missense_Mutation p.T79P 0.25 deleterious(0.01) possibly_damaging(0.697) TCGA-G4-6588-01 15 59752335 59752335 C T FAM81A Missense_Mutation p.A75V 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 15 63446031 63446032 - A RPS27L 3'UTR 0.29 TCGA-G4-6588-01 15 63893998 63893998 A - FBXL22 3'UTR 0.32 TCGA-G4-6588-01 15 64701892 64701892 G A TRIP4 Missense_Mutation p.R303Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 15 64972918 64972918 G A ZNF609 Missense_Mutation p.S1340N 0.29 tolerated(0.3) benign(0.058) TCGA-G4-6588-01 15 64983649 64983650 GA - OAZ2 Frame_Shift_Del p.A55Sfs*4 0.18 TCGA-G4-6588-01 15 65490573 65490573 G A CILP Missense_Mutation p.S684L 0.31 deleterious(0.01) benign(0.003) TCGA-G4-6588-01 15 66615034 66615034 A G DIS3L Missense_Mutation p.M446V 0.23 deleterious(0.01) benign(0.064) TCGA-G4-6588-01 15 67073595 67073595 C T SMAD6 Missense_Mutation p.R405C 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 15 68118547 68118547 C T SKOR1 Silent p.C313C 0.39 TCGA-G4-6588-01 15 70970468 70970468 T G UACA Missense_Mutation p.K323N 0.28 deleterious(0) benign(0.033) TCGA-G4-6588-01 15 71300727 71300727 C T LRRC49 Silent p.D398D 0.27 TCGA-G4-6588-01 15 72103136 72103136 C A NR2E3 RNA 0.07 TCGA-G4-6588-01 15 73889442 73889442 G A NPTN Silent p.N120N 0.31 TCGA-G4-6588-01 15 74425849 74425849 G A ISLR2 Missense_Mutation p.A252T 0.29 tolerated(0.2) benign(0.2) TCGA-G4-6588-01 15 74426492 74426492 G A ISLR2 Missense_Mutation p.R466Q 0.32 tolerated(0.49) benign(0.003) TCGA-G4-6588-01 15 74427819 74427819 T - ISLR2 3'UTR 0.31 TCGA-G4-6588-01 15 74836290 74836292 CAG - ARID3B In_Frame_Del p.Q15del 0.35 TCGA-G4-6588-01 15 75093223 75093223 G A CSK Missense_Mutation p.A228T 0.40 tolerated(0.56) probably_damaging(0.998) TCGA-G4-6588-01 15 75094936 75094936 C T CSK 3'UTR 0.40 TCGA-G4-6588-01 15 75500634 75500634 G A C15orf39 Missense_Mutation p.A749T 0.44 tolerated(0.82) benign(0.002) TCGA-G4-6588-01 15 75558637 75558637 C T GOLGA6C Nonsense_Mutation p.R347* 0.21 TCGA-G4-6588-01 15 75977105 75977105 G T CSPG4 Missense_Mutation p.P1474H 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 15 75977765 75977765 G A CSPG4 Missense_Mutation p.A1356V 0.35 tolerated(0.54) benign(0.006) TCGA-G4-6588-01 15 77287849 77287849 C T PSTPIP1 5'UTR 0.33 TCGA-G4-6588-01 15 77328147 77328147 C A PSTPIP1 Silent p.S330S 0.28 TCGA-G4-6588-01 15 79092831 79092831 C T ADAMTS7 Silent p.A53A 0.38 TCGA-G4-6588-01 15 79341893 79341893 G T RASGRF1 Missense_Mutation p.S190Y 0.37 deleterious(0.03) benign(0.029) TCGA-G4-6588-01 15 79586295 79586295 C A ANKRD34C Silent p.S223S 0.37 TCGA-G4-6588-01 15 79748854 79748854 G A KIAA1024 Missense_Mutation p.C122Y 0.18 deleterious(0.01) benign(0.188) TCGA-G4-6588-01 15 81271544 81271544 C T MESDC2 3'UTR 0.38 TCGA-G4-6588-01 15 83331951 83331951 T G AP3B2 Silent p.P825P 0.32 TCGA-G4-6588-01 15 84592692 84592692 A G ADAMTSL3 Missense_Mutation p.Q675R 0.37 deleterious(0) benign(0.086) TCGA-G4-6588-01 15 86124266 86124269 CTTT - AKAP13 Frame_Shift_Del p.F990Lfs*18 0.38 TCGA-G4-6588-01 15 87066055 87066055 T C AGBL1 Missense_Mutation p.L811P 0.18 deleterious(0) probably_damaging(0.994) TCGA-G4-6588-01 15 89008972 89008972 G A MRPL46 Silent p.H87H 0.27 TCGA-G4-6588-01 15 89386585 89386585 G T ACAN Splice_Site p.X253_splice 0.30 TCGA-G4-6588-01 15 90167619 90167619 A G TICRR Missense_Mutation p.T1360A 0.17 deleterious(0.03) possibly_damaging(0.742) TCGA-G4-6588-01 15 90170270 90170270 A G TICRR Missense_Mutation p.T1896A 0.13 deleterious(0) possibly_damaging(0.797) TCGA-G4-6588-01 15 90214720 90214720 G - PLIN1 Frame_Shift_Del p.P109Lfs*8 0.28 TCGA-G4-6588-01 15 90334290 90334290 G A ANPEP Missense_Mutation p.R855W 0.23 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 15 90342525 90342525 C T ANPEP Missense_Mutation p.A659T 0.29 deleterious(0) possibly_damaging(0.895) TCGA-G4-6588-01 15 90346978 90346978 A G ANPEP Missense_Mutation p.V446A 0.22 tolerated(0.07) benign(0.019) TCGA-G4-6588-01 15 90617522 90617522 G T ZNF710 Missense_Mutation p.D609Y 0.24 deleterious(0) possibly_damaging(0.552) TCGA-G4-6588-01 15 90773624 90773624 G A CIB1 3'UTR 0.29 TCGA-G4-6588-01 15 91420774 91420774 C G FURIN Missense_Mutation p.A199G 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-G4-6588-01 15 92459517 92459517 G A SLCO3A1 Missense_Mutation p.E159K 0.35 tolerated(0.89) benign(0.009) TCGA-G4-6588-01 15 99874189 99874189 A G LRRC28 Silent p.L149L 0.28 TCGA-G4-6588-01 16 11219865 11219865 A G CLEC16A Missense_Mutation p.T835A 0.12 tolerated(0.1) benign(0.001) TCGA-G4-6588-01 16 1270085 1270085 G - CACNA1H Frame_Shift_Del p.G2053Afs*135 0.13 TCGA-G4-6588-01 16 1270496 1270496 C - CACNA1H Frame_Shift_Del p.C2191Afs*26 0.32 TCGA-G4-6588-01 16 139732 139732 C T NPRL3 Missense_Mutation p.A444T 0.33 tolerated(0.3) benign(0.009) TCGA-G4-6588-01 16 14021980 14021980 C T ERCC4 Missense_Mutation p.T227I 0.31 deleterious(0.05) possibly_damaging(0.517) TCGA-G4-6588-01 16 1448918 1448918 A C UNKL Intron 0.22 TCGA-G4-6588-01 16 14968915 14968915 G A NOMO1 Missense_Mutation p.A693T 0.31 tolerated(0.42) benign(0.013) TCGA-G4-6588-01 16 1551464 1551464 C - TELO2 Frame_Shift_Del p.Q444Sfs*63 0.35 TCGA-G4-6588-01 16 1779542 1779542 G T MAPK8IP3 Nonsense_Mutation p.G189* 0.07 TCGA-G4-6588-01 16 1812705 1812707 AGA - MAPK8IP3 In_Frame_Del p.K569del 0.28 TCGA-G4-6588-01 16 19049359 19049359 A G TMC7 Missense_Mutation p.H390R 0.31 tolerated(0.44) benign(0.065) TCGA-G4-6588-01 16 19130433 19130433 C T ITPRIPL2 3'UTR 0.09 TCGA-G4-6588-01 16 20043315 20043315 G A GPR139 Silent p.D268D 0.34 TCGA-G4-6588-01 16 2011238 2011240 AGG - NDUFB10 In_Frame_Del p.E74del 0.32 TCGA-G4-6588-01 16 2024786 2024786 C T TBL3 Silent p.R134R 0.42 TCGA-G4-6588-01 16 2030115 2030116 TG - NOXO1 Frame_Shift_Del p.H161Qfs*21 0.33 TCGA-G4-6588-01 16 20352508 20352508 G A UMOD Silent p.G494G 0.47 TCGA-G4-6588-01 16 20448644 20448644 C A ACSM5 Silent p.V497V 0.29 TCGA-G4-6588-01 16 20554532 20554532 C A ACSM2B Missense_Mutation p.G445V 0.22 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 16 20994094 20994094 A G DNAH3 Missense_Mutation p.V2603A 0.29 deleterious(0) probably_damaging(0.994) TCGA-G4-6588-01 16 21261834 21261834 C T ANKS4B Missense_Mutation p.A316V 0.37 tolerated(0.13) benign(0.004) TCGA-G4-6588-01 16 2158645 2158645 G T PKD1 Missense_Mutation p.L2175M 0.34 probably_damaging(0.999) TCGA-G4-6588-01 16 2161247 2161247 C T PKD1 Silent p.T1307T 0.41 TCGA-G4-6588-01 16 22262002 22262002 T C EEF2K Missense_Mutation p.C146R 0.10 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 16 22339834 22339834 C - POLR3E Frame_Shift_Del p.Q626Rfs*20 0.28 TCGA-G4-6588-01 16 2237445 2237445 C T CASKIN1 Missense_Mutation p.G212D 0.34 probably_damaging(0.988) TCGA-G4-6588-01 16 2303956 2303956 G A RNPS1 3'UTR 0.15 TCGA-G4-6588-01 16 23646947 23646947 T G PALB2 Missense_Mutation p.K307T 0.39 deleterious(0.01) possibly_damaging(0.842) TCGA-G4-6588-01 16 23702323 23702323 T C ERN2 Silent p.A918A 0.35 TCGA-G4-6588-01 16 23718096 23718096 G - ERN2 Frame_Shift_Del p.R204Afs*43 0.33 TCGA-G4-6588-01 16 27481682 27481682 T C GTF3C1 Missense_Mutation p.T1521A 0.08 deleterious(0) benign(0.257) TCGA-G4-6588-01 16 2765790 2765790 G A PRSS27 Silent p.N55N 0.19 TCGA-G4-6588-01 16 27751874 27751874 A G KIAA0556 Silent p.P752P 0.41 TCGA-G4-6588-01 16 28109878 28109878 G - XPO6 Frame_Shift_Del p.P1120Lfs*4 0.25 TCGA-G4-6588-01 16 2814073 2814073 A G SRRM2 Missense_Mutation p.R1182G 0.27 unknown(0) TCGA-G4-6588-01 16 28497684 28497684 C T CLN3 Missense_Mutation p.A221T 0.26 tolerated(0.27) benign(0.021) TCGA-G4-6588-01 16 28506940 28506940 C T APOBR Missense_Mutation p.A193V 0.28 tolerated(0.11) benign(0.425) TCGA-G4-6588-01 16 28734540 28734540 G A EIF3C Missense_Mutation p.A278T 0.16 tolerated(0.45) benign(0.003) TCGA-G4-6588-01 16 29678254 29678254 G C SPN 3'UTR 0.29 TCGA-G4-6588-01 16 29825012 29825012 G - PRRT2 Frame_Shift_Del p.A214Pfs*15 0.28 TCGA-G4-6588-01 16 29918177 29918177 G - KCTD13 3'UTR 0.30 TCGA-G4-6588-01 16 29992782 29992782 G A TAOK2 Intron 0.36 TCGA-G4-6588-01 16 29994401 29994401 G T TAOK2 Missense_Mutation p.E336D 0.09 tolerated(0.14) benign(0.147) TCGA-G4-6588-01 16 30097687 30097687 C T TBX6 Silent p.P390P 0.36 TCGA-G4-6588-01 16 30386159 30386160 - C MYLPF 5'UTR 0.25 TCGA-G4-6588-01 16 30536499 30536499 C T ZNF768 Missense_Mutation p.R321H 0.39 tolerated_low_confidence(0.06) probably_damaging(0.974) TCGA-G4-6588-01 16 30594321 30594321 C T ZNF785 Missense_Mutation p.D260N 0.29 tolerated(0.13) benign(0.067) TCGA-G4-6588-01 16 30594463 30594463 G A ZNF785 Silent p.R212R 0.29 TCGA-G4-6588-01 16 30676118 30676118 G A FBRS Silent p.S480S 0.45 TCGA-G4-6588-01 16 3071630 3071630 C T TNFRSF12A Silent p.L92L 0.22 TCGA-G4-6588-01 16 30793760 30793760 G A ZNF629 Missense_Mutation p.A630V 0.36 tolerated(0.32) benign(0) TCGA-G4-6588-01 16 30794632 30794632 C T ZNF629 Silent p.T339T 0.25 TCGA-G4-6588-01 16 30977128 30977129 - C SETD1A Frame_Shift_Ins p.E645* 0.34 TCGA-G4-6588-01 16 30990644 30990644 G A SETD1A Silent p.P1179P 0.37 TCGA-G4-6588-01 16 30998220 30998220 A C HSD3B7 Missense_Mutation p.E197D 0.17 tolerated(0.05) possibly_damaging(0.859) TCGA-G4-6588-01 16 31072374 31072374 G - ZNF668 3'UTR 0.30 TCGA-G4-6588-01 16 31072732 31072732 C - ZNF668 Frame_Shift_Del p.G529Vfs*23 0.31 TCGA-G4-6588-01 16 31075328 31075328 C T ZNF668 Silent p.A174A 0.35 TCGA-G4-6588-01 16 31092704 31092704 C T ZNF646 Missense_Mutation p.R1687C 0.43 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 16 311425 311425 C T ITFG3 Missense_Mutation p.A207V 0.33 tolerated(0.61) benign(0.015) TCGA-G4-6588-01 16 31144702 31144702 G A PRSS8 Silent p.C37C 0.39 TCGA-G4-6588-01 16 31153059 31153059 G A PRSS36 Missense_Mutation p.H582Y 0.32 tolerated(0.12) benign(0.392) TCGA-G4-6588-01 16 3140537 3140537 G A ZSCAN10 Missense_Mutation p.P245S 0.33 tolerated(0.2) benign(0.025) TCGA-G4-6588-01 16 31439114 31439114 G - COX6A2 Frame_Shift_Del p.T92Rfs*? 0.23 TCGA-G4-6588-01 16 31477235 31477235 G A ARMC5 Silent p.T643T 0.24 TCGA-G4-6588-01 16 3340126 3340127 - GA ZNF263 Frame_Shift_Ins p.L545Dfs*12 0.22 TCGA-G4-6588-01 16 3458654 3458654 G A ZNF174 Missense_Mutation p.R320H 0.09 tolerated(1) benign(0.002) TCGA-G4-6588-01 16 3646279 3646279 G - SLX4 Frame_Shift_Del p.P600Rfs*24 0.33 TCGA-G4-6588-01 16 3646333 3646333 C T SLX4 Missense_Mutation p.R582Q 0.43 tolerated(1) benign(0.004) TCGA-G4-6588-01 16 3707076 3707076 C T DNASE1 Silent p.D171D 0.39 TCGA-G4-6588-01 16 3736083 3736083 G A TRAP1 Missense_Mutation p.H129Y 0.32 tolerated(0.83) benign(0.075) TCGA-G4-6588-01 16 4408375 4408375 C T CORO7 Missense_Mutation p.R817Q 0.27 deleterious(0) benign(0.434) TCGA-G4-6588-01 16 4433386 4433387 - AT VASN 3'UTR 0.20 TCGA-G4-6588-01 16 449726 449726 G A NME4 Missense_Mutation p.V143I 0.38 tolerated(1) benign(0.001) TCGA-G4-6588-01 16 461021 461021 C T DECR2 Silent p.R202R 0.37 TCGA-G4-6588-01 16 46712899 46712899 G A VPS35 Missense_Mutation p.R226C 0.34 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 16 46741590 46741590 A G MYLK3 3'UTR 0.10 TCGA-G4-6588-01 16 4702676 4702676 T C MGRN1 Intron 0.09 TCGA-G4-6588-01 16 47497851 47497851 T C PHKB Intron 0.29 TCGA-G4-6588-01 16 48396479 48396479 A - SIAH1 Intron 0.24 TCGA-G4-6588-01 16 4924881 4924881 G A UBN1 Missense_Mutation p.A824T 0.15 deleterious_low_confidence(0.05) benign(0.021) TCGA-G4-6588-01 16 49314898 49314898 G - CBLN1 Frame_Shift_Del p.P107Rfs*13 0.26 TCGA-G4-6588-01 16 4935347 4935347 C A PPL Missense_Mutation p.K1103N 0.27 tolerated(0.09) possibly_damaging(0.883) TCGA-G4-6588-01 16 4944548 4944548 G A PPL Silent p.S438S 0.32 TCGA-G4-6588-01 16 5009352 5009352 C T SEC14L5 Nonsense_Mutation p.R10* 0.35 TCGA-G4-6588-01 16 50733737 50733737 C T NOD2 Missense_Mutation p.R138W 0.28 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 16 5112548 5112548 C A C16orf89 Missense_Mutation p.W79L 0.09 deleterious(0) probably_damaging(0.931) TCGA-G4-6588-01 16 53476579 53476579 A T RBL2 Missense_Mutation p.E127D 0.21 deleterious(0.01) possibly_damaging(0.867) TCGA-G4-6588-01 16 54966715 54966715 C T IRX5 Silent p.S185S 0.25 TCGA-G4-6588-01 16 55513438 55513438 C T MMP2 Missense_Mutation p.A16V 0.23 tolerated(0.55) benign(0) TCGA-G4-6588-01 16 56867319 56867319 G A NUP93 Splice_Site p.X513_splice 0.30 TCGA-G4-6588-01 16 56914040 56914040 A G SLC12A3 Splice_Site p.X482_splice 0.41 TCGA-G4-6588-01 16 57974188 57974188 C T CNGB1 Missense_Mutation p.V387M 0.36 tolerated_low_confidence(0.15) benign(0.108) TCGA-G4-6588-01 16 58220731 58220731 C A CSNK2A2 Missense_Mutation p.E82D 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-G4-6588-01 16 58615334 58615334 A G CNOT1 Missense_Mutation p.V377A 0.29 tolerated(0.07) benign(0.155) TCGA-G4-6588-01 16 618718 618718 C - NHLRC4 3'UTR 0.43 TCGA-G4-6588-01 16 66998553 66998553 T C CES3 Missense_Mutation p.F248L 0.33 deleterious(0) probably_damaging(0.958) TCGA-G4-6588-01 16 67005198 67005198 G A CES3 Missense_Mutation p.V423I 0.38 tolerated(0.06) benign(0.006) TCGA-G4-6588-01 16 67233133 67233133 A G ELMO3 Silent p.G21G 0.31 TCGA-G4-6588-01 16 67268096 67268096 G A FHOD1 Silent p.L504L 0.25 TCGA-G4-6588-01 16 67314407 67314407 G A PLEKHG4 Missense_Mutation p.G154R 0.29 tolerated(0.23) benign(0.057) TCGA-G4-6588-01 16 67400944 67400944 A G LRRC36 Missense_Mutation p.Q260R 0.27 tolerated(0.28) probably_damaging(0.995) TCGA-G4-6588-01 16 67400959 67400959 C T LRRC36 Missense_Mutation p.S265F 0.20 deleterious(0) probably_damaging(0.937) TCGA-G4-6588-01 16 67517230 67517230 G A AGRP Silent p.G24G 0.44 TCGA-G4-6588-01 16 67696555 67696555 C T PARD6A 3'UTR 0.50 TCGA-G4-6588-01 16 683778 683778 C T WFIKKN1 Silent p.R456R 0.17 TCGA-G4-6588-01 16 70253697 70253697 A C FKSG63 5'Flank 0.08 TCGA-G4-6588-01 16 712760 712760 C T WDR90 Silent p.V1409V 0.28 TCGA-G4-6588-01 16 720920 720920 C T RHOT2 Missense_Mutation p.P223L 0.24 tolerated(0.08) benign(0.288) TCGA-G4-6588-01 16 72108188 72108188 C T HPR Missense_Mutation p.R33C 0.34 deleterious(0.03) benign(0.205) TCGA-G4-6588-01 16 722987 722987 C T RHOT2 Silent p.P529P 0.38 TCGA-G4-6588-01 16 726297 726298 - C RHBDL1 Frame_Shift_Ins p.R67Pfs*35 0.38 TCGA-G4-6588-01 16 72829469 72829469 G A ZFHX3 Missense_Mutation p.A2371V 0.29 probably_damaging(0.935) TCGA-G4-6588-01 16 732993 732993 G A JMJD8 Missense_Mutation p.P246L 0.26 tolerated(0.27) benign(0.023) TCGA-G4-6588-01 16 74425476 74425476 C T NPIPB15 Missense_Mutation p.S277L 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6588-01 16 74446942 74446942 C - CLEC18B Frame_Shift_Del p.L224Sfs*11 0.11 TCGA-G4-6588-01 16 74496520 74496520 A G GLG1 Silent p.L934L 0.27 TCGA-G4-6588-01 16 75268995 75268995 G T BCAR1 Missense_Mutation p.A647D 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 16 75678239 75678239 C A KARS Missense_Mutation p.G30C 0.40 tolerated_low_confidence(0.19) benign(0) TCGA-G4-6588-01 16 781646 781646 C - NARFL Frame_Shift_Del p.G318Afs*27 0.32 TCGA-G4-6588-01 16 81116360 81116360 C T GCSH 3'UTR 0.39 TCGA-G4-6588-01 16 81173282 81173282 G A PKD1L2 5'Flank 0.33 TCGA-G4-6588-01 16 81236304 81236304 G T PKD1L2 Missense_Mutation p.P315H 0.20 deleterious(0) probably_damaging(0.947) TCGA-G4-6588-01 16 81944263 81944263 C T PLCG2 Silent p.C624C 0.21 TCGA-G4-6588-01 16 839687 839687 G A CHTF18 Missense_Mutation p.R193H 0.27 tolerated(0.09) benign(0.015) TCGA-G4-6588-01 16 84228032 84228032 C T ADAD2 Intron 0.19 TCGA-G4-6588-01 16 84695205 84695205 C T KLHL36 Silent p.G439G 0.36 TCGA-G4-6588-01 16 84793857 84793857 T C USP10 Silent p.V510V 0.32 TCGA-G4-6588-01 16 84801888 84801888 G A USP10 Missense_Mutation p.R641H 0.26 tolerated(0.25) benign(0.053) TCGA-G4-6588-01 16 85100955 85100955 T C KIAA0513 Missense_Mutation p.L93P 0.29 tolerated(0.21) benign(0.003) TCGA-G4-6588-01 16 86613521 86613521 C T FOXL1 3'UTR 0.39 TCGA-G4-6588-01 16 86614452 86614453 AG - FOXL1 3'UTR 0.32 TCGA-G4-6588-01 16 87723406 87723406 C - JPH3 Frame_Shift_Del p.T482Pfs*127 0.41 TCGA-G4-6588-01 16 8844296 8844296 T - ABAT Frame_Shift_Del p.F74Sfs*32 0.34 TCGA-G4-6588-01 16 88502997 88502997 C T ZNF469 Missense_Mutation p.P3012L 0.42 benign(0.038) TCGA-G4-6588-01 16 88504852 88504852 G - ZNF469 Frame_Shift_Del p.R3634Efs*58 0.58 TCGA-G4-6588-01 16 88713177 88713177 G A CYBA Silent p.A91A 0.28 TCGA-G4-6588-01 16 8889772 8889772 C T TMEM186 3'UTR 0.11 TCGA-G4-6588-01 16 88926074 88926074 C T TRAPPC2L Silent p.Y70Y 0.24 TCGA-G4-6588-01 16 89043171 89043171 C T CBFA2T3 Silent p.S15S 0.27 TCGA-G4-6588-01 16 89346285 89346285 T C ANKRD11 Missense_Mutation p.E2222G 0.08 possibly_damaging(0.655) TCGA-G4-6588-01 16 89598371 89598371 C - SPG7 Frame_Shift_Del p.G352Afs*87 0.26 TCGA-G4-6588-01 16 89628037 89628037 C A RPL13 Missense_Mutation p.P100T 0.22 tolerated(0.35) possibly_damaging(0.498) TCGA-G4-6588-01 16 89764374 89764374 G - SPATA2L Frame_Shift_Del p.R215Efs*102 0.36 TCGA-G4-6588-01 16 89920723 89920723 G A SPIRE2 Silent p.P225P 0.31 TCGA-G4-6588-01 16 90161924 90161924 C T TUBB8P7 RNA 0.27 TCGA-G4-6588-01 16 9017178 9017178 G A USP7 Nonsense_Mutation p.R93* 0.33 TCGA-G4-6588-01 16 9857046 9857046 C T GRIN2A Missense_Mutation p.R1452H 0.32 tolerated(0.64) probably_damaging(0.924) TCGA-G4-6588-01 17 10348419 10348419 G A MYH4 Silent p.S1780S 0.33 TCGA-G4-6588-01 17 11461549 11461549 G A SHISA6 Silent p.T528T 0.31 TCGA-G4-6588-01 17 11772519 11772519 T C DNAH9 Silent p.C3334C 0.08 TCGA-G4-6588-01 17 11797749 11797749 C A DNAH9 Missense_Mutation p.P3781Q 0.33 probably_damaging(0.935) TCGA-G4-6588-01 17 12642606 12642606 C - MYOCD Frame_Shift_Del p.S229Afs*4 0.37 TCGA-G4-6588-01 17 13504454 13504454 G A HS3ST3A1 5'UTR 0.55 TCGA-G4-6588-01 17 1382944 1382944 G A MYO1C Missense_Mutation p.A321V 0.33 tolerated(0.24) benign(0.011) TCGA-G4-6588-01 17 15341034 15341035 - G TVP23C-CDRT4 3'UTR 0.26 TCGA-G4-6588-01 17 1542993 1542993 A G SCARF1 Missense_Mutation p.S395P 0.32 deleterious(0) possibly_damaging(0.602) TCGA-G4-6588-01 17 1543277 1543277 G - SCARF1 Frame_Shift_Del p.T357Pfs*10 0.33 TCGA-G4-6588-01 17 15973797 15973797 T C NCOR1 Missense_Mutation p.I1399V 0.34 probably_damaging(0.946) TCGA-G4-6588-01 17 1638935 1638935 C - WDR81 Frame_Shift_Del p.H1752Tfs*33 0.27 TCGA-G4-6588-01 17 17041254 17041254 G A MPRIP Missense_Mutation p.R254H 0.22 deleterious(0.03) benign(0.408) TCGA-G4-6588-01 17 17152329 17152329 T C COPS3 Missense_Mutation p.S350G 0.24 deleterious(0.01) possibly_damaging(0.665) TCGA-G4-6588-01 17 17698817 17698817 A G RAI1 Missense_Mutation p.D852G 0.33 deleterious(0) possibly_damaging(0.735) TCGA-G4-6588-01 17 17897644 17897644 G T LRRC48 Missense_Mutation p.S208I 0.25 tolerated(0.13) benign(0.137) TCGA-G4-6588-01 17 18022389 18022389 T C MYO15A Missense_Mutation p.M92T 0.27 possibly_damaging(0.563) TCGA-G4-6588-01 17 18157877 18157877 G A FLII Missense_Mutation p.T178M 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-G4-6588-01 17 18418849 18418850 - C CTD-2303H24.2 RNA 0.42 TCGA-G4-6588-01 17 1928158 1928158 A G RTN4RL1 Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6588-01 17 19579038 19579038 A G ALDH3A2 3'UTR 0.26 TCGA-G4-6588-01 17 20239152 20239152 T A RN7SL17P 5'Flank 0.15 TCGA-G4-6588-01 17 20908273 20908273 C T USP22 Silent p.Q451Q 0.14 TCGA-G4-6588-01 17 21319163 21319163 G A KCNJ12 Missense_Mutation p.C170Y 0.10 tolerated(0.06) benign(0.077) TCGA-G4-6588-01 17 2228009 2228009 A G TSR1 Missense_Mutation p.V712A 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-G4-6588-01 17 26907057 26907057 C A RP11-192H23.4 Nonsense_Mutation p.G328* 0.26 TCGA-G4-6588-01 17 27014197 27014197 G A SUPT6H Missense_Mutation p.C931Y 0.31 deleterious(0) probably_damaging(0.938) TCGA-G4-6588-01 17 27085681 27085681 G T FAM222B Silent p.S432S 0.31 TCGA-G4-6588-01 17 27225575 27225575 G - DHRS13 Frame_Shift_Del p.H340Tfs*23 0.25 TCGA-G4-6588-01 17 27228208 27228208 G A DHRS13 Missense_Mutation p.A161V 0.33 deleterious(0.04) benign(0.076) TCGA-G4-6588-01 17 27308428 27308428 T C SEZ6 Missense_Mutation p.T229A 0.18 deleterious(0.04) benign(0.004) TCGA-G4-6588-01 17 27414070 27414070 C T MYO18A Missense_Mutation p.E1866K 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6588-01 17 27417032 27417032 G A MYO18A Missense_Mutation p.R1825W 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6588-01 17 28378191 28378191 A G EFCAB5 Missense_Mutation p.H419R 0.17 tolerated(0.45) benign(0.002) TCGA-G4-6588-01 17 29111122 29111122 T - CRLF3 3'UTR 0.37 TCGA-G4-6588-01 17 29162214 29162214 T C ATAD5 Missense_Mutation p.V372A 0.10 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 17 29508754 29508754 T C NF1 Silent p.Y227Y 0.23 TCGA-G4-6588-01 17 29858706 29858706 G A RAB11FIP4 Missense_Mutation p.A624T 0.36 deleterious(0) probably_damaging(0.966) TCGA-G4-6588-01 17 30202320 30202320 A G UTP6 Missense_Mutation p.L413P 0.32 deleterious(0) probably_damaging(0.985) TCGA-G4-6588-01 17 32483355 32483355 T C ASIC2 Missense_Mutation p.Y66C 0.14 deleterious(0) probably_damaging(0.913) TCGA-G4-6588-01 17 33319588 33319588 G A LIG3 Silent p.S444S 0.39 TCGA-G4-6588-01 17 3336909 3336909 A G OR1E2 Missense_Mutation p.V76A 0.09 deleterious(0.01) possibly_damaging(0.698) TCGA-G4-6588-01 17 3337021 3337021 G T OR1E2 Missense_Mutation p.L39I 0.29 tolerated(0.2) benign(0.002) TCGA-G4-6588-01 17 33464077 33464077 G C NLE1 Missense_Mutation p.D257E 0.30 tolerated(1) benign(0.01) TCGA-G4-6588-01 17 34001333 34001333 A - AP2B1 Frame_Shift_Del p.N774Ifs*17 0.25 TCGA-G4-6588-01 17 34233476 34233476 C T AC015849.16 RNA 0.20 TCGA-G4-6588-01 17 34313637 34313637 C T CCL14 Missense_Mutation p.A17T 0.24 tolerated(0.49) benign(0.072) TCGA-G4-6588-01 17 34852017 34852017 G A MYO19 3'UTR 0.38 TCGA-G4-6588-01 17 35298152 35298152 C T LHX1 Nonsense_Mutation p.Q215* 0.33 TCGA-G4-6588-01 17 35990142 35990142 G T DDX52 Missense_Mutation p.P222H 0.28 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 17 36486949 36486949 C T GPR179 Missense_Mutation p.A835T 0.16 tolerated(0.63) benign(0.011) TCGA-G4-6588-01 17 3657205 3657205 C T ITGAE Missense_Mutation p.V467M 0.28 deleterious(0.04) possibly_damaging(0.785) TCGA-G4-6588-01 17 3663535 3663535 G A ITGAE Silent p.P215P 0.10 TCGA-G4-6588-01 17 3664323 3664323 C G ITGAE Missense_Mutation p.E194D 0.34 tolerated(0.29) benign(0.002) TCGA-G4-6588-01 17 36876025 36876025 G A MLLT6 Missense_Mutation p.A678T 0.34 tolerated(0.28) unknown(0) TCGA-G4-6588-01 17 37351157 37351157 A G CACNB1 Missense_Mutation p.S51P 0.23 deleterious(0) probably_damaging(0.99) TCGA-G4-6588-01 17 38346909 38346909 G A RAPGEFL1 Silent p.E204E 0.25 TCGA-G4-6588-01 17 3848033 3848033 C T ATP2A3 Missense_Mutation p.A418T 0.14 deleterious(0.05) possibly_damaging(0.86) TCGA-G4-6588-01 17 38715178 38715178 G A CCR7 Silent p.S9S 0.25 TCGA-G4-6588-01 17 38792344 38792344 T C SMARCE1 Missense_Mutation p.N127S 0.09 deleterious(0.02) possibly_damaging(0.621) TCGA-G4-6588-01 17 39183163 39183163 T C KRTAP1-5 Missense_Mutation p.Q82R 0.29 tolerated(0.9) unknown(0) TCGA-G4-6588-01 17 39323916 39323916 C T KRTAP4-3 Missense_Mutation p.R170H 0.34 tolerated(0.46) unknown(0) TCGA-G4-6588-01 17 39550305 39550305 C T KRT31 Missense_Mutation p.R405H 0.17 tolerated(0.21) possibly_damaging(0.662) TCGA-G4-6588-01 17 39553183 39553183 G A KRT31 Missense_Mutation p.A138V 0.28 deleterious(0.02) possibly_damaging(0.544) TCGA-G4-6588-01 17 39564815 39564815 T - AC003958.2 RNA 0.47 TCGA-G4-6588-01 17 39671717 39671717 C T KRT15 Intron 0.26 TCGA-G4-6588-01 17 39780697 39780697 C - KRT17 Frame_Shift_Del p.G22Afs*93 0.41 TCGA-G4-6588-01 17 39914755 39914755 C A JUP Nonsense_Mutation p.E557* 0.43 TCGA-G4-6588-01 17 39978537 39978537 C - FKBP10 Frame_Shift_Del p.P543Lfs*5 0.25 TCGA-G4-6588-01 17 40265590 40265590 C T KAT2A 3'UTR 0.43 TCGA-G4-6588-01 17 40456360 40456360 C T STAT5A Silent p.N390N 0.26 TCGA-G4-6588-01 17 40557112 40557112 G A PTRF Missense_Mutation p.R256C 0.23 deleterious(0) probably_damaging(0.988) TCGA-G4-6588-01 17 40716509 40716509 C A COASY Missense_Mutation p.L350I 0.35 tolerated(0.18) benign(0.028) TCGA-G4-6588-01 17 40837368 40837368 C A CNTNAP1 Silent p.A215A 0.42 TCGA-G4-6588-01 17 40839754 40839754 G A CNTNAP1 Missense_Mutation p.R354H 0.30 tolerated(0.17) benign(0.401) TCGA-G4-6588-01 17 42083487 42083487 C T NAGS Missense_Mutation p.A266V 0.38 tolerated(0.05) benign(0.007) TCGA-G4-6588-01 17 42085055 42085055 C A NAGS Silent p.G455G 0.26 TCGA-G4-6588-01 17 42085969 42085969 A G NAGS Nonstop_Mutation p.*535Wext*23 0.22 TCGA-G4-6588-01 17 42228349 42228349 G T C17orf53 Missense_Mutation p.E415D 0.27 tolerated(0.37) benign(0.02) TCGA-G4-6588-01 17 42271911 42271911 G A ATXN7L3 Missense_Mutation p.T297M 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.46) TCGA-G4-6588-01 17 42883204 42883204 C T GJC1 Intron 0.21 TCGA-G4-6588-01 17 43474294 43474294 G A ARHGAP27 Nonsense_Mutation p.R306* 0.37 TCGA-G4-6588-01 17 43482356 43482356 G - ARHGAP27 Frame_Shift_Del p.G54Afs*24 0.33 TCGA-G4-6588-01 17 4348402 4348402 T C SPNS3 Missense_Mutation p.M114T 0.34 deleterious(0) probably_damaging(0.929) TCGA-G4-6588-01 17 43531193 43531193 C T PLEKHM1 Silent p.S675S 0.36 TCGA-G4-6588-01 17 43552823 43552823 G A PLEKHM1 Missense_Mutation p.T189M 0.37 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 17 4446408 4446408 C A MYBBP1A Missense_Mutation p.G898W 0.33 deleterious(0) possibly_damaging(0.729) TCGA-G4-6588-01 17 44590098 44590098 C T LRRC37A2 Missense_Mutation p.P7L 0.22 tolerated_low_confidence(0.25) benign(0.007) TCGA-G4-6588-01 17 44626419 44626419 A G LRRC37A2 Missense_Mutation p.Y1305C 0.16 deleterious(0) probably_damaging(0.99) TCGA-G4-6588-01 17 44954232 44954232 C A WNT9B 3'UTR 0.34 TCGA-G4-6588-01 17 4576248 4576248 C G PELP1 Missense_Mutation p.A680P 0.29 possibly_damaging(0.665) TCGA-G4-6588-01 17 4634775 4634775 C A MED11 5'UTR 0.31 TCGA-G4-6588-01 17 46671006 46671006 A G HOXB5 Silent p.Y13Y 0.24 TCGA-G4-6588-01 17 46673787 46673787 T - HOXB6 Frame_Shift_Del p.K221Nfs*66 0.36 TCGA-G4-6588-01 17 46700409 46700411 CTT - HOXB9 In_Frame_Del p.K202del 0.38 TCGA-G4-6588-01 17 47903386 47903386 A - KAT7 Frame_Shift_Del p.V504Lfs*14 0.28 TCGA-G4-6588-01 17 4792994 4792994 G A MINK1 Missense_Mutation p.R428Q 0.31 tolerated(0.07) benign(0) TCGA-G4-6588-01 17 4802047 4802047 G T CHRNE Missense_Mutation p.P489Q 0.36 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-G4-6588-01 17 48046980 48046980 C T DLX4 Missense_Mutation p.P50S 0.31 tolerated(0.38) benign(0.444) TCGA-G4-6588-01 17 48437350 48437350 G A XYLT2 Missense_Mutation p.A766T 0.38 tolerated(0.42) benign(0.154) TCGA-G4-6588-01 17 4858527 4858527 G T ENO3 Missense_Mutation p.G201V 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-G4-6588-01 17 48695602 48695602 C A CACNA1G Silent p.P1775P 0.07 TCGA-G4-6588-01 17 48701875 48701875 G A CACNA1G Silent p.R2128R 0.26 TCGA-G4-6588-01 17 48742598 48742598 G A ABCC3 Missense_Mutation p.A475T 0.09 tolerated(1) benign(0.044) TCGA-G4-6588-01 17 52993152 52993152 C T TOM1L1 Nonsense_Mutation p.R217* 0.33 TCGA-G4-6588-01 17 5352216 5352216 C G DHX33 Splice_Site p.X577_splice 0.30 TCGA-G4-6588-01 17 56060390 56060390 G A VEZF1 Missense_Mutation p.A133V 0.30 tolerated(0.06) probably_damaging(0.985) TCGA-G4-6588-01 17 56083765 56083765 T G SRSF1 Silent p.G106G 0.23 TCGA-G4-6588-01 17 56386258 56386258 T C BZRAP1 Missense_Mutation p.R1459G 0.21 tolerated(0.06) benign(0.24) TCGA-G4-6588-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.48 TCGA-G4-6588-01 17 56572481 56572481 A G MTMR4 Missense_Mutation p.Y1008H 0.26 tolerated(1) probably_damaging(0.999) TCGA-G4-6588-01 17 56590285 56590285 G - MTMR4 Frame_Shift_Del p.S8Afs*16 0.33 TCGA-G4-6588-01 17 57148297 57148297 A G TRIM37 Silent p.C232C 0.10 TCGA-G4-6588-01 17 60754705 60754705 C T MRC2 Missense_Mutation p.S637L 0.24 deleterious(0.01) benign(0.054) TCGA-G4-6588-01 17 61391911 61391911 T C TANC2 Missense_Mutation p.V367A 0.29 tolerated(0.11) benign(0.012) TCGA-G4-6588-01 17 61498206 61498206 C T TANC2 Silent p.A1621A 0.32 TCGA-G4-6588-01 17 61560495 61560495 C - ACE Frame_Shift_Del p.P485Lfs*40 0.29 TCGA-G4-6588-01 17 61781804 61781804 G - STRADA Frame_Shift_Del p.R333Gfs*42 0.28 TCGA-G4-6588-01 17 61909274 61909274 A G PSMC5 Splice_Site p.X390_splice 0.32 TCGA-G4-6588-01 17 61911079 61911079 G A SMARCD2 Silent p.V395V 0.30 TCGA-G4-6588-01 17 61994827 61994827 T C GH1 Missense_Mutation p.K166E 0.33 tolerated(0.14) benign(0.034) TCGA-G4-6588-01 17 62081096 62081096 C T ICAM2 Missense_Mutation p.R186H 0.09 tolerated(0.67) benign(0) TCGA-G4-6588-01 17 62121357 62121357 G A ERN1 Silent p.D975D 0.26 TCGA-G4-6588-01 17 62254683 62254683 A G TEX2 Splice_Site p.X864_splice 0.26 TCGA-G4-6588-01 17 62532801 62532801 C T CEP95 Nonsense_Mutation p.R718* 0.30 TCGA-G4-6588-01 17 64172965 64172965 T - CEP112 Frame_Shift_Del p.I94Ffs*41 0.28 TCGA-G4-6588-01 17 64637475 64637475 C - PRKCA Frame_Shift_Del p.R99Gfs*32 0.23 TCGA-G4-6588-01 17 64684448 64684448 C T PRKCA Nonsense_Mutation p.R239* 0.35 TCGA-G4-6588-01 17 65344748 65344748 G A PSMD12 Missense_Mutation p.A143V 0.33 deleterious(0) possibly_damaging(0.797) TCGA-G4-6588-01 17 65688757 65688757 T - PITPNC1 Frame_Shift_Del p.F252Sfs*64 0.29 TCGA-G4-6588-01 17 65989239 65989239 G - C17orf58 Frame_Shift_Del p.D9Tfs*10 0.29 TCGA-G4-6588-01 17 66267125 66267125 A - SLC16A6 Frame_Shift_Del p.F392Lfs*8 0.21 TCGA-G4-6588-01 17 66364738 66364738 G A ARSG Missense_Mutation p.V252M 0.30 deleterious(0.01) probably_damaging(0.979) TCGA-G4-6588-01 17 66537039 66537039 G A FAM20A Silent p.S390S 0.31 TCGA-G4-6588-01 17 67218693 67218693 C A ABCA10 Missense_Mutation p.K60N 0.36 tolerated(0.46) benign(0.378) TCGA-G4-6588-01 17 695206 695206 A G RNMTL1 Missense_Mutation p.D387G 0.18 deleterious(0) probably_damaging(0.99) TCGA-G4-6588-01 17 708448 708448 A G NXN Missense_Mutation p.V287A 0.28 deleterious(0.03) possibly_damaging(0.489) TCGA-G4-6588-01 17 71204463 71204463 C T COG1 Missense_Mutation p.P939L 0.54 deleterious(0.02) benign(0.005) TCGA-G4-6588-01 17 7125357 7125357 T C ACADVL Missense_Mutation p.C260R 0.30 deleterious(0.04) possibly_damaging(0.88) TCGA-G4-6588-01 17 7139966 7139966 C T PHF23 Missense_Mutation p.A94T 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-G4-6588-01 17 71429879 71429879 C A SDK2 Missense_Mutation p.W435L 0.36 deleterious(0.01) benign(0.029) TCGA-G4-6588-01 17 72353791 72353791 A G BTBD17 Missense_Mutation p.S148P 0.16 tolerated(0.31) benign(0.008) TCGA-G4-6588-01 17 72699260 72699260 C T CD300LF Intron 0.32 TCGA-G4-6588-01 17 72926595 72926595 T - OTOP2 Frame_Shift_Del p.F290Lfs*25 0.35 TCGA-G4-6588-01 17 72948398 72948398 G A HID1 Silent p.L704L 0.31 TCGA-G4-6588-01 17 73102134 73102134 C A SLC16A5 3'UTR 0.19 TCGA-G4-6588-01 17 73150553 73150553 G T HN1 5'UTR 0.32 TCGA-G4-6588-01 17 7324499 7324499 C T SPEM1 Nonsense_Mutation p.Q169* 0.36 TCGA-G4-6588-01 17 7324666 7324666 G - SPEM1 Frame_Shift_Del p.A226Rfs*35 0.39 TCGA-G4-6588-01 17 7346511 7346511 G A FGF11 3'UTR 0.23 TCGA-G4-6588-01 17 73485681 73485681 C A KIAA0195 Missense_Mutation p.L298M 0.33 tolerated(0.05) benign(0.06) TCGA-G4-6588-01 17 73748368 73748368 G - ITGB4 Frame_Shift_Del p.A1304Pfs*140 0.19 TCGA-G4-6588-01 17 73826531 73826531 C T UNC13D Silent p.V914V 0.34 TCGA-G4-6588-01 17 73832979 73832979 C T UNC13D Missense_Mutation p.R359H 0.28 deleterious(0.03) benign(0.008) TCGA-G4-6588-01 17 7399878 7399878 C T POLR2A Silent p.D161D 0.38 TCGA-G4-6588-01 17 74077646 74077646 G A ZACN Silent p.A230A 0.24 TCGA-G4-6588-01 17 74266407 74266407 C T UBALD2 Missense_Mutation p.P106S 0.41 deleterious(0.03) probably_damaging(0.929) TCGA-G4-6588-01 17 74865091 74865091 T C MGAT5B 5'Flank 0.38 TCGA-G4-6588-01 17 75189591 75189591 A - SEC14L1 Frame_Shift_Del p.I147Lfs*3 0.30 TCGA-G4-6588-01 17 7533520 7533520 G A SHBG Silent p.S10S 0.14 TCGA-G4-6588-01 17 7640482 7640482 G A DNAH2 Missense_Mutation p.S359N 0.36 benign(0.003) TCGA-G4-6588-01 17 76817105 76817105 C T USP36 Missense_Mutation p.D266N 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 17 76825030 76825030 C T USP36 Missense_Mutation p.A179T 0.25 deleterious(0.04) probably_damaging(1) TCGA-G4-6588-01 17 7683563 7683563 A G DNAH2 Silent p.A1937A 0.28 TCGA-G4-6588-01 17 7796797 7796797 G T CHD3 Missense_Mutation p.A294S 0.34 benign(0.092) TCGA-G4-6588-01 17 78184625 78184625 C T SGSH Missense_Mutation p.V379M 0.42 deleterious(0.04) possibly_damaging(0.74) TCGA-G4-6588-01 17 78188036 78188036 C T SGSH Missense_Mutation p.G200R 0.26 tolerated(0.18) probably_damaging(0.981) TCGA-G4-6588-01 17 78237427 78237427 G A RNF213 5'UTR 0.30 TCGA-G4-6588-01 17 7826409 7826409 C G KCNAB3 3'UTR 0.15 TCGA-G4-6588-01 17 78519367 78519367 T - RPTOR 5'UTR 0.37 TCGA-G4-6588-01 17 7852809 7852809 G - CNTROB Frame_Shift_Del p.G922Efs*? 0.33 TCGA-G4-6588-01 17 79478650 79478650 A G ACTG1 Silent p.I122I 0.30 TCGA-G4-6588-01 17 79651130 79651130 C A HGS Missense_Mutation p.L12I 0.28 tolerated(0.06) benign(0.257) TCGA-G4-6588-01 17 79671282 79671282 T C SLC25A10 Missense_Mutation p.V28A 0.18 tolerated_low_confidence(0.17) benign(0.001) TCGA-G4-6588-01 17 7979609 7979609 C T ALOX12B Silent p.S472S 0.26 TCGA-G4-6588-01 17 7984547 7984547 C - AC129492.6 3'UTR 0.25 TCGA-G4-6588-01 17 79977240 79977240 C T STRA13 Missense_Mutation p.V54M 0.32 tolerated(0.11) probably_damaging(0.952) TCGA-G4-6588-01 17 8047101 8047101 G A PER1 Missense_Mutation p.A852V 0.40 tolerated(0.33) benign(0.003) TCGA-G4-6588-01 17 9862650 9862650 G T GAS7 Intron 0.20 TCGA-G4-6588-01 18 14179311 14179311 G A ANKRD20A5P 5'Flank 0.27 TCGA-G4-6588-01 18 14763803 14763803 G A ANKRD30B Silent p.T313T 0.35 TCGA-G4-6588-01 18 14763858 14763858 A C ANKRD30B Missense_Mutation p.T332P 0.25 tolerated_low_confidence(0.15) benign(0.271) TCGA-G4-6588-01 18 18603599 18603599 G A ROCK1 Silent p.S418S 0.27 TCGA-G4-6588-01 18 21096298 21096298 G A C18orf8 Silent p.S188S 0.32 TCGA-G4-6588-01 18 21119428 21119428 T C NPC1 Silent p.R934R 0.19 TCGA-G4-6588-01 18 21451595 21451595 C - LAMA3 Frame_Shift_Del p.P1658Lfs*91 0.34 TCGA-G4-6588-01 18 22057362 22057362 T A HRH4 Missense_Mutation p.S337T 0.35 tolerated(0.3) benign(0.035) TCGA-G4-6588-01 18 23637600 23637600 C - SS18 Frame_Shift_Del p.G113Vfs*11 0.34 TCGA-G4-6588-01 18 2579000 2579000 C T NDC80 Missense_Mutation p.A184V 0.29 deleterious(0.03) possibly_damaging(0.661) TCGA-G4-6588-01 18 29264412 29264412 C A B4GALT6 5'UTR 0.42 TCGA-G4-6588-01 18 29451069 29451069 C T TRAPPC8 Missense_Mutation p.A693T 0.32 deleterious(0) possibly_damaging(0.688) TCGA-G4-6588-01 18 29453458 29453458 G T TRAPPC8 Missense_Mutation p.P666H 0.35 deleterious(0) probably_damaging(0.984) TCGA-G4-6588-01 18 30350036 30350036 G A KLHL14 Silent p.C173C 0.38 TCGA-G4-6588-01 18 32887807 32887807 A G ZNF271 RNA 0.25 TCGA-G4-6588-01 18 33739749 33739749 G T ELP2 Missense_Mutation p.G594V 0.30 tolerated(0.12) benign(0.097) TCGA-G4-6588-01 18 34340623 34340623 T C FHOD3 Missense_Mutation p.L1318P 0.32 deleterious(0.03) probably_damaging(0.946) TCGA-G4-6588-01 18 34414280 34414280 T A KIAA1328 Intron 0.15 TCGA-G4-6588-01 18 34901781 34901781 G A CELF4 Missense_Mutation p.R145C 0.25 deleterious(0.01) benign(0.2) TCGA-G4-6588-01 18 40695395 40695396 - C RIT2 Frame_Shift_Ins p.V31Sfs*3 0.32 TCGA-G4-6588-01 18 44559424 44559424 G A TCEB3B Silent p.L738L 0.36 TCGA-G4-6588-01 18 47463680 47463680 C T MYO5B Missense_Mutation p.V614I 0.34 tolerated(0.3) benign(0.03) TCGA-G4-6588-01 18 56204900 56204900 G A ALPK2 Missense_Mutation p.T840M 0.33 tolerated(0.17) benign(0) TCGA-G4-6588-01 18 56246440 56246440 T - ALPK2 Frame_Shift_Del p.K523Rfs*15 0.45 TCGA-G4-6588-01 18 56985667 56985667 T C CPLX4 Missense_Mutation p.S10G 0.08 tolerated(1) benign(0.018) TCGA-G4-6588-01 18 57122084 57122084 T - CCBE1 Frame_Shift_Del p.K218Rfs*181 0.24 TCGA-G4-6588-01 18 59947618 59947618 C T KIAA1468 Missense_Mutation p.A998V 0.28 deleterious(0.04) benign(0.059) TCGA-G4-6588-01 18 60986232 60986232 C T BCL2 5'UTR 0.22 TCGA-G4-6588-01 18 61160208 61160208 T C SERPINB5 Silent p.A149A 0.30 TCGA-G4-6588-01 18 61234175 61234175 T - SERPINB12 Frame_Shift_Del p.L385Sfs*? 0.12 TCGA-G4-6588-01 18 61569046 61569046 A G SERPINB2 Missense_Mutation p.Y203C 0.33 deleterious(0) probably_damaging(0.995) TCGA-G4-6588-01 18 65180370 65180378 GGGTCCATA - DSEL In_Frame_Del p.Y500_P502del 0.27 TCGA-G4-6588-01 18 657939 657939 G A TYMS Missense_Mutation p.S66N 0.67 tolerated(0.37) benign(0.005) TCGA-G4-6588-01 18 67345063 67345063 C T DOK6 Missense_Mutation p.A128V 0.29 tolerated(0.05) benign(0.056) TCGA-G4-6588-01 18 67345078 67345078 G A DOK6 Missense_Mutation p.R133Q 0.29 tolerated(0.22) possibly_damaging(0.664) TCGA-G4-6588-01 18 6873723 6873723 C T ARHGAP28 Silent p.D228D 0.33 TCGA-G4-6588-01 18 71822377 71822377 C T TIMM21 Intron 0.33 TCGA-G4-6588-01 18 7231560 7231560 C T LRRC30 Silent p.L142L 0.20 TCGA-G4-6588-01 18 72776006 72776006 A T ZNF407 Missense_Mutation p.E2110V 0.10 deleterious(0) possibly_damaging(0.69) TCGA-G4-6588-01 18 72999957 72999957 C T TSHZ1 Silent p.S820S 0.36 TCGA-G4-6588-01 18 73001235 73001237 AAC - TSHZ1 3'UTR 0.18 TCGA-G4-6588-01 18 77170795 77170795 G A NFATC1 Missense_Mutation p.A161T 0.33 deleterious(0) probably_damaging(0.967) TCGA-G4-6588-01 18 7888274 7888274 G T PTPRM Missense_Mutation p.G123W 0.31 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 18 7955245 7955245 C - PTPRM Frame_Shift_Del p.T322Rfs*34 0.33 TCGA-G4-6588-01 18 8784105 8784105 C - SOGA2 Frame_Shift_Del p.L334Cfs*5 0.34 TCGA-G4-6588-01 18 8793004 8793004 C - SOGA2 Frame_Shift_Del p.V635Ffs*9 0.28 TCGA-G4-6588-01 18 9936994 9936994 A - VAPA Frame_Shift_Del p.K117Nfs*5 0.10 TCGA-G4-6588-01 19 10402459 10402459 C T ICAM5 Missense_Mutation p.S216L 0.48 deleterious(0.01) probably_damaging(1) TCGA-G4-6588-01 19 1041338 1041338 C - ABCA7 5'UTR 0.25 TCGA-G4-6588-01 19 10426120 10426120 A G FDX1L Silent p.S83S 0.26 TCGA-G4-6588-01 19 10426564 10426564 C - FDX1L Frame_Shift_Del p.V37Wfs*32 0.28 TCGA-G4-6588-01 19 10445835 10445835 C T ICAM3 Missense_Mutation p.A282T 0.28 tolerated(0.05) benign(0.232) TCGA-G4-6588-01 19 10464235 10464235 T C TYK2 Missense_Mutation p.Q999R 0.42 tolerated(0.11) possibly_damaging(0.479) TCGA-G4-6588-01 19 10753044 10753044 C T SLC44A2 Missense_Mutation p.T644M 0.11 deleterious(0) benign(0.165) TCGA-G4-6588-01 19 11100004 11100004 G A SMARCA4 Missense_Mutation p.R377H 0.22 possibly_damaging(0.832) TCGA-G4-6588-01 19 1111060 1111060 C T SBNO2 Missense_Mutation p.G948S 0.21 tolerated(0.4) benign(0.038) TCGA-G4-6588-01 19 1124006 1124006 T C SBNO2 Missense_Mutation p.R153G 0.07 tolerated_low_confidence(0.44) benign(0) TCGA-G4-6588-01 19 11944978 11944978 G A ZNF440 3'UTR 0.29 TCGA-G4-6588-01 19 12089831 12089832 - A ZNF763 Frame_Shift_Ins p.P370Tfs*3 0.24 TCGA-G4-6588-01 19 12221139 12221139 A T ZNF788 Missense_Mutation p.D28V 0.28 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 19 12222274 12222274 G A ZNF788 5'UTR 0.29 TCGA-G4-6588-01 19 12767856 12767856 G A MAN2B1 Silent p.N478N 0.50 TCGA-G4-6588-01 19 12769126 12769126 G A MAN2B1 Missense_Mutation p.A381V 0.28 deleterious(0) possibly_damaging(0.799) TCGA-G4-6588-01 19 12874573 12874573 G T HOOK2 Missense_Mutation p.P616H 0.18 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 19 12903868 12903868 A G JUNB 3'UTR 0.42 TCGA-G4-6588-01 19 13008116 13008116 G T GCDH Splice_Site p.X319_splice 0.37 TCGA-G4-6588-01 19 13319670 13319670 C T CACNA1A Missense_Mutation p.R2227H 0.30 possibly_damaging(0.715) TCGA-G4-6588-01 19 13373574 13373574 T - CACNA1A Frame_Shift_Del p.T1355Pfs*16 0.29 TCGA-G4-6588-01 19 1418690 1418690 G - DAZAP1 Frame_Shift_Del p.M90Cfs*53 0.33 TCGA-G4-6588-01 19 14261780 14261780 G A LPHN1 Missense_Mutation p.R1444W 0.37 deleterious(0.01) probably_damaging(0.967) TCGA-G4-6588-01 19 14270965 14270965 G A LPHN1 Missense_Mutation p.R592W 0.42 deleterious(0) probably_damaging(0.978) TCGA-G4-6588-01 19 1432615 1432615 C T DAZAP1 Missense_Mutation p.P325L 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6588-01 19 14517681 14517681 T C CD97 Missense_Mutation p.C706R 0.28 deleterious(0) probably_damaging(0.971) TCGA-G4-6588-01 19 14593771 14593771 C T GIPC1 Silent p.G6G 0.10 TCGA-G4-6588-01 19 1490189 1490189 C T PCSK4 Missense_Mutation p.A53T 0.29 deleterious(0.02) possibly_damaging(0.788) TCGA-G4-6588-01 19 15221518 15221518 T C SYDE1 Missense_Mutation p.V421A 0.29 deleterious(0.02) probably_damaging(0.943) TCGA-G4-6588-01 19 15289862 15289862 C T NOTCH3 Missense_Mutation p.R1231H 0.38 tolerated(0.88) benign(0.001) TCGA-G4-6588-01 19 15483892 15483892 C T AKAP8 Missense_Mutation p.V211M 0.38 tolerated(1) benign(0.002) TCGA-G4-6588-01 19 15648200 15648200 C T CYP4F22 Silent p.F132F 0.38 TCGA-G4-6588-01 19 15756540 15756540 G A CYP4F3 Silent p.S70S 0.31 TCGA-G4-6588-01 19 15770103 15770103 G A CYP4F3 Missense_Mutation p.V491I 0.43 tolerated(0.29) benign(0.027) TCGA-G4-6588-01 19 15917828 15917828 C T OR10H1 3'UTR 0.27 TCGA-G4-6588-01 19 16515539 16515539 G A EPS15L1 Missense_Mutation p.R430W 0.30 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 19 16606596 16606596 C T CALR3 Silent p.S53S 0.24 TCGA-G4-6588-01 19 16861115 16861115 G A NWD1 Silent p.P554P 0.32 TCGA-G4-6588-01 19 17318054 17318054 G A MYO9B Splice_Site p.X1875_splice 0.30 TCGA-G4-6588-01 19 17329213 17329213 G A USE1 Intron 0.33 TCGA-G4-6588-01 19 17927842 17927842 G A INSL3 Silent p.D104D 0.37 TCGA-G4-6588-01 19 1816538 1816538 G A REXO1 Silent p.A1116A 0.27 TCGA-G4-6588-01 19 18332983 18332983 C T PDE4C Silent p.S131S 0.30 TCGA-G4-6588-01 19 18557213 18557213 C T ELL Missense_Mutation p.R537H 0.45 deleterious(0) benign(0.41) TCGA-G4-6588-01 19 18727815 18727815 G A TMEM59L Silent p.Q189Q 0.33 TCGA-G4-6588-01 19 18856711 18856711 C T CRTC1 Missense_Mutation p.R124C 0.36 deleterious(0.02) probably_damaging(0.988) TCGA-G4-6588-01 19 18979513 18979513 C T GDF1 Missense_Mutation p.V338M 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 19 22018863 22018863 G A ZNF43 5'UTR 0.22 TCGA-G4-6588-01 19 22847740 22847740 T C ZNF492 Silent p.C423C 0.22 TCGA-G4-6588-01 19 2290044 2290044 C T LINGO3 Missense_Mutation p.A578T 0.13 tolerated(0.58) benign(0.001) TCGA-G4-6588-01 19 2290680 2290680 G A LINGO3 Missense_Mutation p.R366C 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 19 23542613 23542613 G A ZNF91 Silent p.G1056G 0.27 TCGA-G4-6588-01 19 23544174 23544174 T C ZNF91 Missense_Mutation p.H536R 0.22 deleterious(0.01) probably_damaging(0.934) TCGA-G4-6588-01 19 2807543 2807543 C T THOP1 Silent p.G330G 0.29 TCGA-G4-6588-01 19 30193593 30193594 - C C19orf12 3'UTR 0.23 TCGA-G4-6588-01 19 3224836 3224836 G T CELF5 Silent p.G33G 0.49 TCGA-G4-6588-01 19 32844463 32844463 G A ZNF507 Missense_Mutation p.E243K 0.32 deleterious(0) possibly_damaging(0.905) TCGA-G4-6588-01 19 33321532 33321532 A G SLC7A9 Silent p.P486P 0.35 TCGA-G4-6588-01 19 3452508 3452508 C T NFIC Silent p.S371S 0.31 TCGA-G4-6588-01 19 34856191 34856192 - C GPI Frame_Shift_Ins p.Q48Pfs*80 0.29 TCGA-G4-6588-01 19 35450295 35450295 G T ZNF792 Missense_Mutation p.P155H 0.39 tolerated(0.41) possibly_damaging(0.784) TCGA-G4-6588-01 19 35504513 35504513 G A GRAMD1A Missense_Mutation p.S263N 0.29 tolerated(0.23) benign(0.017) TCGA-G4-6588-01 19 35550675 35550675 G A HPN Missense_Mutation p.G87R 0.24 tolerated(0.18) benign(0.072) TCGA-G4-6588-01 19 3585782 3585782 G A GIPC3 Missense_Mutation p.A63T 0.40 tolerated(0.17) benign(0.024) TCGA-G4-6588-01 19 35989795 35989795 C - DMKN Frame_Shift_Del p.G455Efs*19 0.27 TCGA-G4-6588-01 19 3600123 3600123 G A TBXA2R Silent p.G170G 0.29 TCGA-G4-6588-01 19 36003533 36003533 C A DMKN Nonsense_Mutation p.G196* 0.34 TCGA-G4-6588-01 19 36047956 36047956 G A ATP4A Silent p.Y576Y 0.38 TCGA-G4-6588-01 19 36217155 36217155 C T KMT2B Missense_Mutation p.R1302C 0.31 probably_damaging(0.993) TCGA-G4-6588-01 19 36228594 36228594 G - KMT2B Frame_Shift_Del p.A2538Pfs*76 0.32 TCGA-G4-6588-01 19 36231450 36231450 T C IGFLR1 Missense_Mutation p.E58G 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6588-01 19 36257840 36257840 C A C19orf55 Missense_Mutation p.P314H 0.24 deleterious(0) probably_damaging(0.975) TCGA-G4-6588-01 19 36349430 36349430 G A KIRREL2 Missense_Mutation p.R111H 0.39 deleterious(0) probably_damaging(0.975) TCGA-G4-6588-01 19 36395173 36395173 C A HCST 3'UTR 0.36 TCGA-G4-6588-01 19 36595793 36595793 G A WDR62 Missense_Mutation p.A1479T 0.26 tolerated_low_confidence(0.36) benign(0.009) TCGA-G4-6588-01 19 37117713 37117713 T C ZNF382 Missense_Mutation p.F305S 0.38 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 19 37209935 37209936 - A ZNF567 Frame_Shift_Ins p.L75Tfs*7 0.23 TCGA-G4-6588-01 19 3746494 3746494 G A TJP3 Silent p.A683A 0.34 TCGA-G4-6588-01 19 3767357 3767357 G A MRPL54 Missense_Mutation p.R128H 0.33 tolerated(0.09) probably_damaging(0.956) TCGA-G4-6588-01 19 38159988 38159989 - A ZNF781 3'UTR 0.24 TCGA-G4-6588-01 19 38746874 38746874 G A PPP1R14A Missense_Mutation p.R36C 0.21 deleterious(0) probably_damaging(0.994) TCGA-G4-6588-01 19 39205202 39205202 G A ACTN4 Splice_Site p.X304_splice 0.16 TCGA-G4-6588-01 19 39294533 39294533 T C LGALS4 Silent p.G159G 0.33 TCGA-G4-6588-01 19 39329634 39329634 G A HNRNPL Missense_Mutation p.P419S 0.32 deleterious(0) probably_damaging(0.993) TCGA-G4-6588-01 19 39395668 39395668 G A NFKBIB Missense_Mutation p.A65T 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 19 39804660 39804660 G A LRFN1 Silent p.L439L 0.15 TCGA-G4-6588-01 19 39805292 39805292 C T LRFN1 Missense_Mutation p.G229R 0.23 deleterious(0) possibly_damaging(0.464) TCGA-G4-6588-01 19 40424193 40424193 G A FCGBP Silent p.G670G 0.29 TCGA-G4-6588-01 19 40424420 40424420 G A FCGBP Silent p.L595L 0.28 TCGA-G4-6588-01 19 407696 407696 G A C2CD4C Silent p.A222A 0.35 TCGA-G4-6588-01 19 40827885 40827885 C - C19orf47 Frame_Shift_Del p.R393Gfs*19 0.26 TCGA-G4-6588-01 19 40883923 40883923 C T PLD3 Missense_Mutation p.T439M 0.26 tolerated(0.11) benign(0.282) TCGA-G4-6588-01 19 41245332 41245332 G A ITPKC Missense_Mutation p.G640D 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 19 41758828 41758828 C A AXL Missense_Mutation p.L628I 0.30 deleterious(0) probably_damaging(0.976) TCGA-G4-6588-01 19 41869421 41869421 C T B9D2 Missense_Mutation p.A2T 0.29 deleterious(0) possibly_damaging(0.899) TCGA-G4-6588-01 19 4218062 4218062 C T ANKRD24 Missense_Mutation p.R969C 0.40 deleterious(0) probably_damaging(0.967) TCGA-G4-6588-01 19 42400459 42400459 C - ARHGEF1 Frame_Shift_Del p.L359Wfs*12 0.30 TCGA-G4-6588-01 19 42482767 42482767 G A ATP1A3 Missense_Mutation p.R554C 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6588-01 19 42794686 42794686 G A CIC Missense_Mutation p.R589Q 0.36 possibly_damaging(0.885) TCGA-G4-6588-01 19 42910424 42910424 C T LIPE Missense_Mutation p.A752T 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6588-01 19 4365528 4365528 G A SH3GL1 Silent p.G94G 0.33 TCGA-G4-6588-01 19 43698654 43698654 G A PSG4 Missense_Mutation p.R361W 0.27 deleterious(0.01) probably_damaging(0.948) TCGA-G4-6588-01 19 43772053 43772053 C T PSG9 Missense_Mutation p.A105T 0.35 deleterious(0) probably_damaging(0.923) TCGA-G4-6588-01 19 44097409 44097409 C T IRGQ Missense_Mutation p.R214H 0.32 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 19 44223197 44223197 T C IRGC Missense_Mutation p.F163L 0.14 deleterious(0.03) probably_damaging(0.914) TCGA-G4-6588-01 19 44251938 44251938 C T SMG9 Missense_Mutation p.V113M 0.28 tolerated(0.29) benign(0) TCGA-G4-6588-01 19 44514649 44514649 C T ZNF230 Missense_Mutation p.A153V 0.18 deleterious(0.04) benign(0.019) TCGA-G4-6588-01 19 44660901 44660901 A C ZNF234 Missense_Mutation p.R244S 0.09 tolerated(0.54) benign(0.305) TCGA-G4-6588-01 19 45495560 45495560 G A CLPTM1 Missense_Mutation p.R542H 0.28 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 19 45682552 45682552 G A BLOC1S3 5'UTR 0.46 TCGA-G4-6588-01 19 45774834 45774834 C - MARK4 Frame_Shift_Del p.P220Hfs*74 0.27 TCGA-G4-6588-01 19 45852738 45852738 C A KLC3 Missense_Mutation p.L341M 0.33 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 19 45864856 45864856 A G ERCC2 Missense_Mutation p.I388T 0.32 deleterious(0.03) possibly_damaging(0.809) TCGA-G4-6588-01 19 46137678 46137678 G A EML2 Silent p.T278T 0.29 TCGA-G4-6588-01 19 46281768 46281768 C T DMPK Silent p.R198R 0.36 TCGA-G4-6588-01 19 46393942 46393942 G - MYPOP Frame_Shift_Del p.P380Hfs*26 0.38 TCGA-G4-6588-01 19 46832495 46832495 C - HIF3A Frame_Shift_Del p.Y493Tfs*57 0.26 TCGA-G4-6588-01 19 46890358 46890358 G A PPP5C Missense_Mutation p.E305K 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 19 46973446 46973446 C T PNMAL1 Missense_Mutation p.A283T 0.19 deleterious(0) possibly_damaging(0.682) TCGA-G4-6588-01 19 46997970 46997970 G A PNMAL2 Silent p.R251R 0.18 TCGA-G4-6588-01 19 46998928 46998928 G A PNMAL2 5'UTR 0.32 TCGA-G4-6588-01 19 47124444 47124444 G T PTGIR 3'UTR 0.12 TCGA-G4-6588-01 19 47151720 47151720 C T DACT3 3'UTR 0.29 TCGA-G4-6588-01 19 47288088 47288088 C A SLC1A5 Intron 0.50 TCGA-G4-6588-01 19 47502587 47502587 C T ARHGAP35 Missense_Mutation p.H1355Y 0.40 tolerated(1) benign(0.003) TCGA-G4-6588-01 19 47569730 47569730 C A ZC3H4 Silent p.T1265T 0.46 TCGA-G4-6588-01 19 4770749 4770751 ACA - MIR7-3 RNA 0.39 TCGA-G4-6588-01 19 47761828 47761828 G A CCDC9 Missense_Mutation p.D6N 0.31 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 19 47768081 47768081 C T CCDC9 Nonsense_Mutation p.R200* 0.33 TCGA-G4-6588-01 19 47823394 47823394 G A C5AR1 Missense_Mutation p.M120I 0.33 deleterious(0.01) possibly_damaging(0.755) TCGA-G4-6588-01 19 47858498 47858498 C A DHX34 Missense_Mutation p.P303H 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6588-01 19 47884192 47884192 C A DHX34 Silent p.P1034P 0.25 TCGA-G4-6588-01 19 47933392 47933392 A T SLC8A2 Missense_Mutation p.I907N 0.30 deleterious(0) probably_damaging(0.983) TCGA-G4-6588-01 19 48894662 48894662 G - KDELR1 5'UTR 0.33 TCGA-G4-6588-01 19 48917352 48917352 C G GRIN2D Missense_Mutation p.T397R 0.31 tolerated(0.44) possibly_damaging(0.774) TCGA-G4-6588-01 19 49001078 49001078 G A LMTK3 Missense_Mutation p.T1112M 0.30 unknown(0) TCGA-G4-6588-01 19 49601712 49601712 G - SNRNP70 Frame_Shift_Del p.D100Mfs*11 0.30 TCGA-G4-6588-01 19 4960710 4960710 C A UHRF1 RNA 0.22 TCGA-G4-6588-01 19 49639040 49639040 C T PPFIA3 Missense_Mutation p.L509F 0.27 tolerated(0.71) benign(0.098) TCGA-G4-6588-01 19 49656857 49656857 T C HRC Silent p.E546E 0.34 TCGA-G4-6588-01 19 49877993 49877993 A T DKKL1 Missense_Mutation p.K146M 0.36 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-G4-6588-01 19 49918205 49918205 C T CCDC155 Intron 0.36 TCGA-G4-6588-01 19 49967407 49967407 C A ALDH16A1 Silent p.A406A 0.38 TCGA-G4-6588-01 19 50098354 50098354 C T PRR12 Silent p.A254A 0.28 TCGA-G4-6588-01 19 50098703 50098703 G A PRR12 Missense_Mutation p.G371S 0.37 probably_damaging(0.935) TCGA-G4-6588-01 19 50124800 50124800 C A PRR12 Missense_Mutation p.P1881H 0.32 unknown(0) TCGA-G4-6588-01 19 50333113 50333113 C - MED25 Frame_Shift_Del p.P201Rfs*13 0.29 TCGA-G4-6588-01 19 50383552 50383552 A G TBC1D17 Missense_Mutation p.D71G 0.37 tolerated(0.33) benign(0.111) TCGA-G4-6588-01 19 50549739 50549740 AC - ZNF473 Frame_Shift_Del p.D680Efs*13 0.21 TCGA-G4-6588-01 19 50753777 50753777 C - MYH14 Frame_Shift_Del p.P556Lfs*25 0.29 TCGA-G4-6588-01 19 50819261 50819261 C - KCNC3 3'UTR 0.32 TCGA-G4-6588-01 19 50823906 50823906 C T KCNC3 Missense_Mutation p.R705Q 0.33 tolerated_low_confidence(0.11) benign(0.019) TCGA-G4-6588-01 19 50827327 50827327 C T KCNC3 Missense_Mutation p.A295T 0.09 tolerated(0.14) possibly_damaging(0.877) TCGA-G4-6588-01 19 50905376 50905376 G A POLD1 Missense_Mutation p.R195Q 0.32 deleterious(0.01) possibly_damaging(0.684) TCGA-G4-6588-01 19 51294935 51294935 T C ACPT Missense_Mutation p.F109S 0.30 deleterious(0) possibly_damaging(0.801) TCGA-G4-6588-01 19 51527894 51527894 G A KLK11 Missense_Mutation p.P98L 0.46 tolerated(0.08) possibly_damaging(0.624) TCGA-G4-6588-01 19 51563225 51563225 T C KLK13 Missense_Mutation p.D122G 0.31 tolerated(0.13) probably_damaging(0.945) TCGA-G4-6588-01 19 51584896 51584896 G T KLK14 Silent p.S51S 0.43 TCGA-G4-6588-01 19 52149543 52149543 A G SIGLEC14 Missense_Mutation p.Y130H 0.25 deleterious(0.01) probably_damaging(1) TCGA-G4-6588-01 19 52149808 52149808 G A SIGLEC14 Silent p.C41C 0.36 TCGA-G4-6588-01 19 52196009 52196009 G A SPACA6P-AS RNA 0.43 TCGA-G4-6588-01 19 52249510 52249510 G A FPR1 Silent p.V246V 0.28 TCGA-G4-6588-01 19 52448040 52448040 C T ZNF613 Missense_Mutation p.R302W 0.27 tolerated(0.18) benign(0.022) TCGA-G4-6588-01 19 52714586 52714586 T C PPP2R1A Missense_Mutation p.I115T 0.29 deleterious(0.01) possibly_damaging(0.768) TCGA-G4-6588-01 19 53138442 53138442 T A ZNF83 5'UTR 0.25 TCGA-G4-6588-01 19 53367389 53367389 C A CTD-2331H12.5 5'Flank 0.50 TCGA-G4-6588-01 19 53453507 53453507 T C ZNF816 Silent p.K507K 0.31 TCGA-G4-6588-01 19 53741243 53741243 T C ZNF677 Missense_Mutation p.Y246C 0.33 tolerated(0.14) benign(0.004) TCGA-G4-6588-01 19 53887505 53887505 G T ZNF525 3'UTR 0.17 TCGA-G4-6588-01 19 53914113 53914113 A C ZNF765 3'UTR 0.14 TCGA-G4-6588-01 19 53996202 53996202 G A ZNF813 3'UTR 0.28 TCGA-G4-6588-01 19 54072631 54072631 A G ZNF331 Translation_Start_Site p.M1? 0.30 deleterious(0.05) benign(0.067) TCGA-G4-6588-01 19 54175278 54175278 A G MIR1323 RNA 0.37 TCGA-G4-6588-01 19 54385784 54385784 G - PRKCG Frame_Shift_Del p.G14Dfs*12 0.25 TCGA-G4-6588-01 19 54617877 54617877 T C TFPT Missense_Mutation p.E76G 0.28 deleterious(0.01) possibly_damaging(0.844) TCGA-G4-6588-01 19 54656356 54656356 C T CNOT3 Missense_Mutation p.R633C 0.34 deleterious(0) possibly_damaging(0.898) TCGA-G4-6588-01 19 54695689 54695689 G A TSEN34 Missense_Mutation p.A121T 0.29 deleterious(0.01) possibly_damaging(0.771) TCGA-G4-6588-01 19 54696220 54696220 T G TSEN34 Nonsense_Mutation p.Y247* 0.33 TCGA-G4-6588-01 19 54711398 54711398 G T RPS9 Missense_Mutation p.K180N 0.29 deleterious(0.05) unknown(0) TCGA-G4-6588-01 19 549770 549770 G T GZMM Missense_Mutation p.K251N 0.33 tolerated(0.06) benign(0.027) TCGA-G4-6588-01 19 55451046 55451046 C - NLRP7 Frame_Shift_Del p.E381Rfs*35 0.33 TCGA-G4-6588-01 19 55590378 55590378 C T EPS8L1 Missense_Mutation p.R24C 0.27 deleterious(0) possibly_damaging(0.724) TCGA-G4-6588-01 19 55669006 55669006 G A TNNI3 5'UTR 0.22 TCGA-G4-6588-01 19 55805596 55805596 C T BRSK1 Missense_Mutation p.A197V 0.16 deleterious(0.04) possibly_damaging(0.829) TCGA-G4-6588-01 19 55823314 55823314 G A BRSK1 Missense_Mutation p.A739T 0.25 tolerated_low_confidence(1) benign(0) TCGA-G4-6588-01 19 55877465 55877466 - C IL11 Frame_Shift_Ins p.I171Hfs*16 0.23 TCGA-G4-6588-01 19 55881782 55881782 G A IL11 5'Flank 0.56 TCGA-G4-6588-01 19 55899695 55899695 T C RPL28 Intron 0.22 TCGA-G4-6588-01 19 56024511 56024511 T A SSC5D Silent p.P973P 0.25 TCGA-G4-6588-01 19 5611148 5611148 G A SAFB2 Silent p.G376G 0.16 TCGA-G4-6588-01 19 56321498 56321498 T - NLRP11 Frame_Shift_Del p.T160Lfs*4 0.27 TCGA-G4-6588-01 19 572593 572593 G A BSG 5'UTR 0.26 TCGA-G4-6588-01 19 57642857 57642857 A G USP29 3'UTR 0.38 TCGA-G4-6588-01 19 57932893 57932893 A T ZNF17 3'UTR 0.28 TCGA-G4-6588-01 19 57956159 57956159 G T ZNF749 Missense_Mutation p.R548M 0.29 deleterious(0) unknown(0) TCGA-G4-6588-01 19 58549472 58549472 C T ZSCAN1 Silent p.L90L 0.31 TCGA-G4-6588-01 19 58879917 58879917 A G ZNF837 Silent p.I261I 0.27 TCGA-G4-6588-01 19 58880385 58880385 G A ZNF837 Silent p.P105P 0.24 TCGA-G4-6588-01 19 58983331 58983331 G A ZNF324 Missense_Mutation p.R491H 0.23 deleterious(0.02) probably_damaging(0.976) TCGA-G4-6588-01 19 59027911 59027911 A G ZBTB45 Missense_Mutation p.V377A 0.28 tolerated(1) benign(0) TCGA-G4-6588-01 19 59073488 59073488 T C MZF1 Missense_Mutation p.H719R 0.29 tolerated(0.08) possibly_damaging(0.506) TCGA-G4-6588-01 19 59074473 59074473 G A MZF1 Missense_Mutation p.R391C 0.20 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 19 6213976 6213976 G - MLLT1 Frame_Shift_Del p.Q461Rfs*46 0.41 TCGA-G4-6588-01 19 6433733 6433733 T C SLC25A41 5'UTR 0.32 TCGA-G4-6588-01 19 6459560 6459560 C T SLC25A23 Missense_Mutation p.G27D 0.38 deleterious(0.01) probably_damaging(1) TCGA-G4-6588-01 19 6471442 6471444 CTC - DENND1C In_Frame_Del p.E408del 0.46 TCGA-G4-6588-01 19 691994 691994 C T PRSS57 Missense_Mutation p.R82H 0.30 tolerated(0.13) benign(0.01) TCGA-G4-6588-01 19 695448 695448 G A PRSS57 5'UTR 0.25 TCGA-G4-6588-01 19 726191 726191 T C PALM Splice_Site p.X19_splice 0.16 TCGA-G4-6588-01 19 7606907 7606907 G A PNPLA6 Silent p.S411S 0.17 TCGA-G4-6588-01 19 7684652 7684657 CTCGTC - XAB2 In_Frame_Del p.D828_E829del 0.19 TCGA-G4-6588-01 19 7747497 7747497 C T TRAPPC5 Missense_Mutation p.R120C 0.22 deleterious(0.01) possibly_damaging(0.828) TCGA-G4-6588-01 19 7810489 7810489 C T CD209 Silent p.R221R 0.21 TCGA-G4-6588-01 19 8028474 8028474 T C ELAVL1 Missense_Mutation p.M292V 0.24 deleterious(0) possibly_damaging(0.519) TCGA-G4-6588-01 19 8168549 8168549 G T FBN3 Missense_Mutation p.H1612Q 0.27 tolerated(0.08) benign(0.146) TCGA-G4-6588-01 19 8564355 8564355 T C PRAM1 Missense_Mutation p.T113A 0.30 tolerated(0.24) benign(0.005) TCGA-G4-6588-01 19 8601412 8601412 G A MYO1F Silent p.Y623Y 0.20 TCGA-G4-6588-01 19 9060241 9060241 G T MUC16 Missense_Mutation p.P9069T 0.21 unknown(0) TCGA-G4-6588-01 19 9065669 9065669 T C MUC16 Silent p.S7259S 0.31 TCGA-G4-6588-01 19 9578634 9578634 G C ZNF560 Missense_Mutation p.T330S 0.26 tolerated(0.5) benign(0.018) TCGA-G4-6588-01 19 9578661 9578661 T A ZNF560 Missense_Mutation p.E321V 0.24 deleterious(0) possibly_damaging(0.788) TCGA-G4-6588-01 19 9677028 9677028 T G ZNF121 Missense_Mutation p.K254T 0.10 deleterious(0) probably_damaging(0.992) TCGA-G4-6588-01 1 100571380 100571380 C T SASS6 Silent p.P496P 0.27 TCGA-G4-6588-01 1 100661824 100661824 A G DBT Missense_Mutation p.L479P 0.32 deleterious(0) possibly_damaging(0.765) TCGA-G4-6588-01 1 100818529 100818529 G A CDC14A Missense_Mutation p.E7K 0.32 tolerated(0.07) benign(0.211) TCGA-G4-6588-01 1 101196902 101196903 - T VCAM1 Frame_Shift_Ins p.L453Ffs*23 0.27 TCGA-G4-6588-01 1 103496694 103496694 G A COL11A1 Missense_Mutation p.A253V 0.32 probably_damaging(0.973) TCGA-G4-6588-01 1 10384926 10384926 G A KIF1B Missense_Mutation p.R837Q 0.30 deleterious(0.02) probably_damaging(0.988) TCGA-G4-6588-01 1 104233949 104233949 G A AMY1B Silent p.S356S 0.16 TCGA-G4-6588-01 1 10436635 10436635 C T KIF1B Missense_Mutation p.S1768L 0.30 tolerated_low_confidence(0.37) benign(0) TCGA-G4-6588-01 1 10713996 10713996 C T CASZ1 Silent p.P706P 0.28 TCGA-G4-6588-01 1 10720398 10720398 G A CASZ1 Missense_Mutation p.A234V 0.27 tolerated_low_confidence(0.08) benign(0.112) TCGA-G4-6588-01 1 109482712 109482712 A G CLCC1 Silent p.Y283Y 0.37 TCGA-G4-6588-01 1 109745781 109745781 T A KIAA1324 3'UTR 0.26 TCGA-G4-6588-01 1 109803814 109803814 G A CELSR2 Missense_Mutation p.R1370H 0.07 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 1 109816704 109816704 C A CELSR2 3'UTR 0.34 TCGA-G4-6588-01 1 110009710 110009710 G A SYPL2 Nonsense_Mutation p.W28* 0.14 TCGA-G4-6588-01 1 110714768 110714768 C T SLC6A17 Missense_Mutation p.R125C 0.30 deleterious(0) probably_damaging(0.982) TCGA-G4-6588-01 1 111216188 111216188 G A KCNA3 Missense_Mutation p.A415V 0.26 deleterious(0) probably_damaging(0.981) TCGA-G4-6588-01 1 111741337 111741337 C G DENND2D Missense_Mutation p.E91Q 0.30 deleterious(0) probably_damaging(0.976) TCGA-G4-6588-01 1 112028460 112028460 G A ADORA3 Missense_Mutation p.T292M 0.36 tolerated_low_confidence(1) benign(0.002) TCGA-G4-6588-01 1 114254624 114254624 T G PHTF1 Missense_Mutation p.S299R 0.23 deleterious(0.02) possibly_damaging(0.641) TCGA-G4-6588-01 1 114267382 114267382 T C PHTF1 Missense_Mutation p.R208G 0.30 tolerated(0.49) possibly_damaging(0.781) TCGA-G4-6588-01 1 115576036 115576036 C T TSHB Missense_Mutation p.A18V 0.36 tolerated(0.33) benign(0.005) TCGA-G4-6588-01 1 116206681 116206682 - T VANGL1 Frame_Shift_Ins p.Y204Lfs*88 0.33 TCGA-G4-6588-01 1 116930018 116930018 G - ATP1A1 Frame_Shift_Del p.F100Sfs*41 0.25 TCGA-G4-6588-01 1 117556331 117556331 T G CD101 Missense_Mutation p.V382G 0.30 deleterious(0.03) benign(0.02) TCGA-G4-6588-01 1 117655069 117655069 T C TRIM45 Missense_Mutation p.Y534C 0.42 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 1 118168091 118168091 T - FAM46C 3'UTR 0.29 TCGA-G4-6588-01 1 118170173 118170173 C T FAM46C 3'UTR 0.39 TCGA-G4-6588-01 1 1191430 1191430 C T UBE2J2 Missense_Mutation p.V180M 0.31 deleterious(0.01) possibly_damaging(0.816) TCGA-G4-6588-01 1 120436942 120436942 C T ADAM30 Missense_Mutation p.G673E 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 1 120927191 120927191 T - FCGR1B Frame_Shift_Del p.E264Kfs*58 0.22 TCGA-G4-6588-01 1 1219402 1219402 G A SCNN1D Silent p.P132P 0.38 TCGA-G4-6588-01 1 12318085 12318085 C T VPS13D Silent p.R345R 0.32 TCGA-G4-6588-01 1 12364692 12364692 G A VPS13D Missense_Mutation p.G2116R 0.27 benign(0) TCGA-G4-6588-01 1 12416558 12416558 T C VPS13D Silent p.Y3325Y 0.19 TCGA-G4-6588-01 1 1254756 1254756 C T CPSF3L Missense_Mutation p.E123K 0.32 tolerated(0.07) probably_damaging(0.956) TCGA-G4-6588-01 1 1269091 1269091 G - TAS1R3 Frame_Shift_Del p.L606Wfs*43 0.39 TCGA-G4-6588-01 1 12907860 12907860 C T HNRNPCL1 Missense_Mutation p.A95T 0.07 tolerated(0.34) benign(0.04) TCGA-G4-6588-01 1 12919080 12919080 G A PRAMEF2 Silent p.T72T 0.25 TCGA-G4-6588-01 1 13668962 13668962 G - PRAMEF14 Frame_Shift_Del p.C457Afs*39 0.24 TCGA-G4-6588-01 1 13933725 13933725 C T PDPN Missense_Mutation p.A118V 0.28 tolerated(1) benign(0.004) TCGA-G4-6588-01 1 14149765 14149765 C T PRDM2 3'UTR 0.10 TCGA-G4-6588-01 1 142697711 142697711 C T RP11-417J8.6 Splice_Site 0.32 TCGA-G4-6588-01 1 145291351 145291351 G A NBPF10 5'Flank 0.17 TCGA-G4-6588-01 1 145579323 145579323 C - PIAS3 Frame_Shift_Del p.L222Cfs*56 0.25 TCGA-G4-6588-01 1 147230517 147230517 C - GJA5 Frame_Shift_Del p.G277Efs*107 0.28 TCGA-G4-6588-01 1 149399080 149399080 G A HIST2H3PS2 3'Flank 0.32 TCGA-G4-6588-01 1 149762846 149762846 G T FCGR1A Nonsense_Mutation p.G300* 0.30 TCGA-G4-6588-01 1 149895880 149895880 G A SF3B4 Missense_Mutation p.H314Y 0.26 deleterious(0) unknown(0) TCGA-G4-6588-01 1 150230455 150230455 T C CA14 5'UTR 0.42 TCGA-G4-6588-01 1 150257012 150257012 G A C1orf51 Missense_Mutation p.R176H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6588-01 1 150525556 150525556 G A ADAMTSL4 Silent p.R87R 0.22 TCGA-G4-6588-01 1 150917433 150917433 G A SETDB1 Missense_Mutation p.R330H 0.33 deleterious(0) benign(0.291) TCGA-G4-6588-01 1 150936731 150936731 G A SETDB1 Missense_Mutation p.R1256Q 0.30 deleterious(0) probably_damaging(0.914) TCGA-G4-6588-01 1 151276079 151276079 A G PI4KB Silent p.S498S 0.28 TCGA-G4-6588-01 1 151318694 151318694 G A RFX5 Nonsense_Mutation p.R35* 0.17 TCGA-G4-6588-01 1 151811567 151811567 G A C2CD4D 5'UTR 0.23 TCGA-G4-6588-01 1 152058867 152058867 C A TCHHL1 Nonsense_Mutation p.G431* 0.31 TCGA-G4-6588-01 1 152192819 152192819 C T HRNR Missense_Mutation p.R429H 0.35 unknown(0) TCGA-G4-6588-01 1 153507094 153507094 T A S100A6 3'UTR 0.43 TCGA-G4-6588-01 1 153749150 153749150 C - SLC27A3 Frame_Shift_Del p.Q324Rfs*3 0.33 TCGA-G4-6588-01 1 154163666 154163666 G A TPM3 Missense_Mutation p.A80V 0.36 tolerated(0.08) benign(0.189) TCGA-G4-6588-01 1 15420796 15420796 C T KAZN Missense_Mutation p.A448V 0.31 deleterious(0) benign(0.071) TCGA-G4-6588-01 1 154296394 154296394 A G AQP10 Intron 0.11 TCGA-G4-6588-01 1 154574226 154574226 C T ADAR Missense_Mutation p.E298K 0.36 deleterious(0.01) probably_damaging(0.936) TCGA-G4-6588-01 1 154943008 154943008 A T SHC1 5'UTR 0.29 TCGA-G4-6588-01 1 154987872 154987872 G - ZBTB7B Frame_Shift_Del p.G281Afs*68 0.28 TCGA-G4-6588-01 1 154995887 154995887 G A DCST2 Silent p.S639S 0.28 TCGA-G4-6588-01 1 155015916 155015916 C T DCST1 Missense_Mutation p.A368V 0.35 tolerated(0.11) benign(0.023) TCGA-G4-6588-01 1 155184056 155184056 C T MTX1 3'Flank 0.32 TCGA-G4-6588-01 1 155257739 155257739 G A HCN3 Missense_Mutation p.E604K 0.30 tolerated_low_confidence(0.38) benign(0.277) TCGA-G4-6588-01 1 155264938 155264938 G A PKLR Silent p.D221D 0.30 TCGA-G4-6588-01 1 155448575 155448575 T C ASH1L Silent p.E1362E 0.31 TCGA-G4-6588-01 1 156021084 156021084 G T UBQLN4 Missense_Mutation p.P99T 0.26 tolerated(0.14) unknown(0) TCGA-G4-6588-01 1 156046759 156046759 G - MEX3A Frame_Shift_Del p.P390Rfs*88 0.32 TCGA-G4-6588-01 1 156265318 156265318 T C C1orf85 Missense_Mutation p.Q40R 0.35 tolerated(0.1) benign(0.041) TCGA-G4-6588-01 1 156309522 156309522 C A TSACC 5'UTR 0.29 TCGA-G4-6588-01 1 156705609 156705609 G A RRNAD1 Missense_Mutation p.R405H 0.37 deleterious(0.01) probably_damaging(0.943) TCGA-G4-6588-01 1 156737771 156737771 C A PRCC Missense_Mutation p.P70T 0.28 tolerated_low_confidence(0.21) unknown(0) TCGA-G4-6588-01 1 156810864 156810864 T C INSRR Missense_Mutation p.N1232S 0.24 tolerated(0.06) benign(0.002) TCGA-G4-6588-01 1 156814053 156814053 C - INSRR Frame_Shift_Del p.L920Cfs*37 0.28 TCGA-G4-6588-01 1 156884483 156884483 C - PEAR1 Frame_Shift_Del p.G1005Afs*57 0.31 TCGA-G4-6588-01 1 157106116 157106116 T - ETV3 Frame_Shift_Del p.K10Sfs*76 0.26 TCGA-G4-6588-01 1 158436255 158436255 C T OR10K1 Nonsense_Mutation p.R302* 0.36 TCGA-G4-6588-01 1 158585162 158585162 C T SPTA1 Missense_Mutation p.R2211H 0.32 tolerated(0.14) benign(0.099) TCGA-G4-6588-01 1 158669532 158669532 T - OR6K2 Frame_Shift_Del p.K304Sfs*3 0.21 TCGA-G4-6588-01 1 15909734 15909734 C A AGMAT Missense_Mutation p.E143D 0.31 tolerated(0.24) benign(0.084) TCGA-G4-6588-01 1 159907551 159907551 G A IGSF9 Missense_Mutation p.R109C 0.36 deleterious(0.01) benign(0.026) TCGA-G4-6588-01 1 160535365 160535365 C T CD84 Missense_Mutation p.V73I 0.30 tolerated(0.23) benign(0) TCGA-G4-6588-01 1 160607035 160607035 T A SLAMF1 Missense_Mutation p.T121S 0.10 tolerated(0.6) benign(0.023) TCGA-G4-6588-01 1 160721195 160721195 A G SLAMF7 Missense_Mutation p.H277R 0.30 tolerated(0.32) benign(0.149) TCGA-G4-6588-01 1 16073399 16073399 G A TMEM82 Silent p.V265V 0.29 TCGA-G4-6588-01 1 160971100 160971100 A G F11R Silent p.P36P 0.39 TCGA-G4-6588-01 1 161199323 161199323 C A TOMM40L 3'UTR 0.28 TCGA-G4-6588-01 1 162368840 162368840 A G SH2D1B Missense_Mutation p.L79P 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 1 16342210 16342210 G A HSPB7 Silent p.C126C 0.31 TCGA-G4-6588-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.24 TCGA-G4-6588-01 1 16535271 16535271 C - ARHGEF19 Frame_Shift_Del p.M94Cfs*67 0.31 TCGA-G4-6588-01 1 166890560 166890560 G A ILDR2 Missense_Mutation p.P423L 0.25 tolerated(0.13) possibly_damaging(0.595) TCGA-G4-6588-01 1 167095235 167095235 G - DUSP27 Frame_Shift_Del p.G291Dfs*22 0.31 TCGA-G4-6588-01 1 167341239 167341239 C - POU2F1 Frame_Shift_Del p.Q124Sfs*4 0.26 TCGA-G4-6588-01 1 168013871 168013871 T C DCAF6 Missense_Mutation p.V631A 0.28 tolerated_low_confidence(0.95) benign(0) TCGA-G4-6588-01 1 168160686 168160686 T - TIPRL Frame_Shift_Del p.F156Lfs*13 0.29 TCGA-G4-6588-01 1 168282209 168282209 G T TBX19 Missense_Mutation p.G439V 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6588-01 1 1689945 1689945 G A NADK Intron 0.31 TCGA-G4-6588-01 1 169762038 169762038 A - METTL18 Frame_Shift_Del p.S267Lfs*12 0.28 TCGA-G4-6588-01 1 173455496 173455496 C T PRDX6 Nonsense_Mutation p.Q168* 0.27 TCGA-G4-6588-01 1 173455515 173455515 G A PRDX6 Missense_Mutation p.R174K 0.34 tolerated(1) benign(0) TCGA-G4-6588-01 1 173842645 173842645 C T ZBTB37 Missense_Mutation p.H322Y 0.25 tolerated(1) benign(0) TCGA-G4-6588-01 1 173962058 173962058 G A RC3H1 Silent p.D22D 0.22 TCGA-G4-6588-01 1 175067571 175067571 C T TNN Silent p.R653R 0.37 TCGA-G4-6588-01 1 175332921 175332921 T G TNR Missense_Mutation p.K877T 0.11 tolerated(0.07) benign(0.034) TCGA-G4-6588-01 1 175334218 175334218 C A TNR Nonsense_Mutation p.E839* 0.25 TCGA-G4-6588-01 1 17586165 17586165 G A PADI3 Missense_Mutation p.R62H 0.39 tolerated(0.06) benign(0.016) TCGA-G4-6588-01 1 17707541 17707542 - A PADI6 Intron 0.35 TCGA-G4-6588-01 1 178514544 178514544 G A C1orf220 Missense_Mutation p.R102Q 0.26 benign(0.412) TCGA-G4-6588-01 1 180885383 180885383 C - KIAA1614 Frame_Shift_Del p.P50Qfs*15 0.32 TCGA-G4-6588-01 1 182025498 182025498 G C ZNF648 Missense_Mutation p.H550D 0.22 deleterious(0) probably_damaging(0.972) TCGA-G4-6588-01 1 183525291 183525291 C T NCF2 Missense_Mutation p.A515T 0.33 tolerated(0.48) benign(0.003) TCGA-G4-6588-01 1 183532665 183532665 G A NCF2 Missense_Mutation p.T361M 0.42 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 1 183944304 183944304 C T COLGALT2 Missense_Mutation p.R140Q 0.44 deleterious(0) probably_damaging(0.981) TCGA-G4-6588-01 1 186082003 186082003 C T HMCN1 Silent p.D3683D 0.46 TCGA-G4-6588-01 1 186089197 186089197 G A HMCN1 Missense_Mutation p.R4050Q 0.22 possibly_damaging(0.561) TCGA-G4-6588-01 1 186092173 186092173 C T HMCN1 Missense_Mutation p.P4107L 0.20 benign(0.342) TCGA-G4-6588-01 1 186925261 186925261 A G PLA2G4A Missense_Mutation p.D455G 0.16 deleterious(0.04) benign(0.014) TCGA-G4-6588-01 1 18957920 18957920 C T PAX7 5'UTR 0.41 TCGA-G4-6588-01 1 19208355 19208355 A G ALDH4A1 Silent p.S235S 0.40 TCGA-G4-6588-01 1 19486690 19486690 G A UBR4 Missense_Mutation p.A1831V 0.16 possibly_damaging(0.632) TCGA-G4-6588-01 1 196918667 196918667 A G CFHR2 Silent p.T47T 0.26 TCGA-G4-6588-01 1 197056087 197056087 A G ASPM Missense_Mutation p.S3393P 0.31 tolerated(1) benign(0.004) TCGA-G4-6588-01 1 197072063 197072063 A G ASPM Silent p.G2106G 0.33 TCGA-G4-6588-01 1 197073726 197073726 T A ASPM Missense_Mutation p.K1552I 0.32 deleterious(0) possibly_damaging(0.863) TCGA-G4-6588-01 1 197616227 197616227 A G DENND1B Silent p.I155I 0.30 TCGA-G4-6588-01 1 200376311 200376311 C T ZNF281 Silent p.S841S 0.33 TCGA-G4-6588-01 1 201187771 201187771 G A IGFN1 Missense_Mutation p.A3295T 0.37 probably_damaging(0.999) TCGA-G4-6588-01 1 201334430 201334430 G T TNNT2 Silent p.I90I 0.37 TCGA-G4-6588-01 1 20141630 20141630 G A RNF186 5'UTR 0.28 TCGA-G4-6588-01 1 201750218 201750218 A - NAV1 Frame_Shift_Del p.K483Nfs*9 0.23 TCGA-G4-6588-01 1 201974851 201974851 G A RNPEP 3'UTR 0.32 TCGA-G4-6588-01 1 202407099 202407099 T C PPP1R12B Missense_Mutation p.Y469H 0.24 tolerated(0.44) benign(0.001) TCGA-G4-6588-01 1 202698265 202698265 A G KDM5B Missense_Mutation p.W1512R 0.08 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 1 203045603 203045603 C T PPFIA4 3'UTR 0.45 TCGA-G4-6588-01 1 203144870 203144870 T - MYBPH Frame_Shift_Del p.N5Tfs*73 0.31 TCGA-G4-6588-01 1 203680184 203680184 C T ATP2B4 Missense_Mutation p.T660I 0.26 deleterious(0.03) benign(0.36) TCGA-G4-6588-01 1 204093856 204093856 A G SOX13 Missense_Mutation p.Y488C 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 1 205388453 205388453 T - LEMD1 Frame_Shift_Del p.K37Sfs*2 0.30 TCGA-G4-6588-01 1 208219403 208219403 G A PLXNA2 Silent p.D1105D 0.50 TCGA-G4-6588-01 1 20971015 20971015 C A PINK1 Missense_Mutation p.P270H 0.36 deleterious(0) probably_damaging(0.981) TCGA-G4-6588-01 1 21133780 21133780 T C EIF4G3 3'UTR 0.35 TCGA-G4-6588-01 1 212118188 212118188 T A INTS7 Missense_Mutation p.I847F 0.32 deleterious(0) benign(0.144) TCGA-G4-6588-01 1 212190321 212190321 G A INTS7 Missense_Mutation p.A139V 0.21 tolerated(1) benign(0.111) TCGA-G4-6588-01 1 212799147 212799147 G A FAM71A Missense_Mutation p.A310T 0.45 tolerated(1) benign(0) TCGA-G4-6588-01 1 214814721 214814721 T C CENPF Silent p.L1014L 0.30 TCGA-G4-6588-01 1 214820017 214820017 C A CENPF Silent p.T2368T 0.27 TCGA-G4-6588-01 1 218480861 218480861 C T RRP15 Missense_Mutation p.R198C 0.31 deleterious(0.03) benign(0.427) TCGA-G4-6588-01 1 21887146 21887146 G A ALPL Missense_Mutation p.R30Q 0.35 deleterious(0.02) possibly_damaging(0.493) TCGA-G4-6588-01 1 220253107 220253107 G A BPNT1 Missense_Mutation p.R28C 0.23 deleterious(0.01) benign(0.001) TCGA-G4-6588-01 1 22141079 22141079 G A LDLRAD2 Missense_Mutation p.A92T 0.23 tolerated(0.16) benign(0.337) TCGA-G4-6588-01 1 221912288 221912288 G T DUSP10 Missense_Mutation p.L267M 0.35 tolerated(0.16) possibly_damaging(0.737) TCGA-G4-6588-01 1 223116177 223116177 C T DISP1 Silent p.S4S 0.28 TCGA-G4-6588-01 1 226032994 226032994 G A EPHX1 Silent p.P438P 0.25 TCGA-G4-6588-01 1 226789743 226789743 C T C1orf95 3'UTR 0.21 TCGA-G4-6588-01 1 227182042 227182042 G - CDC42BPA Frame_Shift_Del p.P1696Qfs*56 0.31 TCGA-G4-6588-01 1 227182658 227182658 C T CDC42BPA Missense_Mutation p.A1632T 0.36 tolerated(0.35) benign(0.217) TCGA-G4-6588-01 1 227920791 227920791 T C SNAP47 5'Flank 0.30 TCGA-G4-6588-01 1 228112020 228112020 C T WNT9A Missense_Mutation p.R145H 0.27 tolerated(0.08) probably_damaging(0.976) TCGA-G4-6588-01 1 228346298 228346298 T C GJC2 Missense_Mutation p.L280P 0.39 deleterious(0) probably_damaging(0.977) TCGA-G4-6588-01 1 22835147 22835147 A G ZBTB40 Missense_Mutation p.E541G 0.28 tolerated(0.05) unknown(0) TCGA-G4-6588-01 1 228399550 228399550 G A OBSCN Silent p.S22S 0.34 TCGA-G4-6588-01 1 22852881 22852881 G A ZBTB40 Missense_Mutation p.A1238T 0.31 tolerated(0.34) benign(0.007) TCGA-G4-6588-01 1 228645295 228645297 TTG - HIST3H2A In_Frame_Del p.N74del 0.32 TCGA-G4-6588-01 1 229568322 229568322 G A ACTA1 Silent p.Y145Y 0.18 TCGA-G4-6588-01 1 23107943 23107943 G A EPHB2 Missense_Mutation p.A31T 0.09 tolerated(0.19) benign(0.052) TCGA-G4-6588-01 1 231556953 231556953 C T EGLN1 Missense_Mutation p.A228T 0.42 tolerated(0.13) benign(0.036) TCGA-G4-6588-01 1 231557530 231557530 G A EGLN1 Silent p.R35R 0.53 TCGA-G4-6588-01 1 233394057 233394057 C T PCNXL2 Silent p.S517S 0.32 TCGA-G4-6588-01 1 233507806 233507806 G A MLK4 Silent p.V525V 0.20 TCGA-G4-6588-01 1 234529463 234529463 G A TARBP1 Missense_Mutation p.A1455V 0.20 tolerated(0.19) benign(0.299) TCGA-G4-6588-01 1 234563463 234563463 T A TARBP1 Missense_Mutation p.N1037I 0.38 deleterious(0) probably_damaging(0.986) TCGA-G4-6588-01 1 23521077 23521077 C T HTR1D 5'UTR 0.38 TCGA-G4-6588-01 1 235506463 235506463 T C GGPS1 3'UTR 0.23 TCGA-G4-6588-01 1 23743761 23743761 G A TCEA3 Nonsense_Mutation p.R121* 0.33 TCGA-G4-6588-01 1 237754202 237754202 A G RYR2 Missense_Mutation p.D1357G 0.39 benign(0.004) TCGA-G4-6588-01 1 237889585 237889585 G A RYR2 Missense_Mutation p.V3568M 0.25 benign(0) TCGA-G4-6588-01 1 240635715 240635715 T C FMN2 Missense_Mutation p.S1702P 0.28 possibly_damaging(0.684) TCGA-G4-6588-01 1 240978035 240978035 T - RGS7 Frame_Shift_Del p.M276Cfs*9 0.28 TCGA-G4-6588-01 1 242159605 242159605 C T MAP1LC3C Missense_Mutation p.A102T 0.36 tolerated(0.05) possibly_damaging(0.636) TCGA-G4-6588-01 1 2433568 2433568 C T PLCH2 Silent p.G866G 0.27 TCGA-G4-6588-01 1 24469571 24469571 A G IL22RA1 Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 1 245530376 245530376 G A KIF26B Missense_Mutation p.V236M 0.30 tolerated(0.6) unknown(0) TCGA-G4-6588-01 1 245766055 245766055 C T KIF26B Silent p.F509F 0.28 TCGA-G4-6588-01 1 245849609 245849609 C T KIF26B Silent p.S1108S 0.37 TCGA-G4-6588-01 1 245850998 245850998 G A KIF26B Silent p.P1571P 0.33 TCGA-G4-6588-01 1 245851525 245851525 G C KIF26B Missense_Mutation p.G1747A 0.38 deleterious(0.01) unknown(0) TCGA-G4-6588-01 1 24664502 24664502 C T GRHL3 Silent p.F287F 0.28 TCGA-G4-6588-01 1 247614975 247614975 G A OR2B11 Nonsense_Mutation p.Q104* 0.29 TCGA-G4-6588-01 1 248128866 248128866 T C OR2AK2 Missense_Mutation p.L78P 0.31 deleterious(0) probably_damaging(0.986) TCGA-G4-6588-01 1 248458201 248458201 C T OR2T12 Missense_Mutation p.R227H 0.31 tolerated(0.42) benign(0.031) TCGA-G4-6588-01 1 249151580 249151581 - C ZNF692 Frame_Shift_Ins p.L115Afs*54 0.32 TCGA-G4-6588-01 1 249213133 249213133 A - PGBD2 3'Flank 0.20 TCGA-G4-6588-01 1 25229132 25229132 G A RUNX3 Silent p.S257S 0.37 TCGA-G4-6588-01 1 25687243 25687244 - T TMEM50A 3'UTR 0.27 TCGA-G4-6588-01 1 25891691 25891691 T C LDLRAP1 Missense_Mutation p.F259L 0.29 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 1 27102143 27102143 C A ARID1A Missense_Mutation p.T1690N 0.10 possibly_damaging(0.695) TCGA-G4-6588-01 1 27120708 27120708 C T PIGV Silent p.G61G 0.09 TCGA-G4-6588-01 1 27278808 27278808 G A C1orf172 Missense_Mutation p.P22S 0.35 tolerated_low_confidence(0.09) benign(0.098) TCGA-G4-6588-01 1 27682985 27682985 G A MAP3K6 Silent p.R1177R 0.36 TCGA-G4-6588-01 1 27722157 27722157 G T GPR3 3'UTR 0.31 TCGA-G4-6588-01 1 28233505 28233505 G A RPA2 Silent p.N89N 0.28 TCGA-G4-6588-01 1 28285395 28285395 G A SMPDL3B 3'UTR 0.54 TCGA-G4-6588-01 1 28793075 28793075 G A PHACTR4 Missense_Mutation p.A217T 0.39 tolerated(0.18) benign(0.011) TCGA-G4-6588-01 1 29320029 29320030 AC - EPB41 Frame_Shift_Del p.T220Sfs*3 0.17 TCGA-G4-6588-01 1 29475258 29475258 C T SRSF4 Silent p.K383K 0.29 TCGA-G4-6588-01 1 31883224 31883224 T - SERINC2 Intron 0.30 TCGA-G4-6588-01 1 32149557 32149557 G A COL16A1 Silent p.G777G 0.30 TCGA-G4-6588-01 1 32192953 32192953 T C BAI2 3'UTR 0.25 TCGA-G4-6588-01 1 32256569 32256569 G A SPOCD1 Missense_Mutation p.L1096F 0.30 deleterious(0.01) probably_damaging(0.927) TCGA-G4-6588-01 1 32266159 32266159 C - SPOCD1 Frame_Shift_Del p.Q496Sfs*9 0.13 TCGA-G4-6588-01 1 32829615 32829615 A - TSSK3 Frame_Shift_Del p.G191Vfs*42 0.34 TCGA-G4-6588-01 1 33231257 33231257 C T KIAA1522 Intron 0.29 TCGA-G4-6588-01 1 33237879 33237879 C - KIAA1522 Frame_Shift_Del p.P1035Hfs*70 0.34 TCGA-G4-6588-01 1 3328645 3328645 C T PRDM16 Silent p.D628D 0.30 TCGA-G4-6588-01 1 3329095 3329095 G A PRDM16 Silent p.K778K 0.29 TCGA-G4-6588-01 1 3329316 3329316 C T PRDM16 Missense_Mutation p.P852L 0.38 tolerated(0.07) benign(0.018) TCGA-G4-6588-01 1 33611424 33611424 G A TRIM62 3'UTR 0.27 TCGA-G4-6588-01 1 34190220 34190220 C T CSMD2 Silent p.A887A 0.34 TCGA-G4-6588-01 1 34401454 34401454 G T CSMD2 Missense_Mutation p.L167I 0.21 deleterious(0.04) benign(0.005) TCGA-G4-6588-01 1 35229049 35229049 G A GJB4 3'UTR 0.32 TCGA-G4-6588-01 1 35454439 35454439 A G ZMYM6 Silent p.Y748Y 0.28 TCGA-G4-6588-01 1 35852652 35852652 T C ZMYM4 Missense_Mutation p.S629P 0.29 tolerated(0.29) benign(0.302) TCGA-G4-6588-01 1 35944696 35944696 G A KIAA0319L Missense_Mutation p.P262S 0.38 tolerated(0.27) benign(0.002) TCGA-G4-6588-01 1 36432609 36432609 G A AGO3 Missense_Mutation p.R82H 0.31 tolerated(0.06) benign(0.405) TCGA-G4-6588-01 1 3644235 3644235 G A TP73 Missense_Mutation p.A296T 0.33 deleterious(0) possibly_damaging(0.703) TCGA-G4-6588-01 1 3649416 3649416 C T TP73 Missense_Mutation p.R562C 0.38 deleterious(0) possibly_damaging(0.88) TCGA-G4-6588-01 1 36603574 36603574 C T TRAPPC3 Silent p.A82A 0.39 TCGA-G4-6588-01 1 36769517 36769517 G A THRAP3 Missense_Mutation p.A923T 0.08 tolerated(0.97) probably_damaging(0.981) TCGA-G4-6588-01 1 3712578 3712578 G T LRRC47 Missense_Mutation p.L155M 0.48 deleterious(0.01) probably_damaging(1) TCGA-G4-6588-01 1 37949352 37949352 A G ZC3H12A 3'UTR 0.53 TCGA-G4-6588-01 1 37974887 37974887 A G MEAF6 Missense_Mutation p.I111T 0.30 tolerated(0.59) benign(0.061) TCGA-G4-6588-01 1 38032419 38032419 C T DNALI1 3'UTR 0.30 TCGA-G4-6588-01 1 38148797 38148797 A G C1orf109 Nonstop_Mutation p.*204Qext*16 0.29 TCGA-G4-6588-01 1 39330311 39330311 T - MYCBP 3'UTR 0.22 TCGA-G4-6588-01 1 39798559 39798559 A T MACF1 Intron 0.34 TCGA-G4-6588-01 1 39847752 39847752 A G MACF1 Silent p.E2530E 0.11 TCGA-G4-6588-01 1 39878519 39878519 C A KIAA0754 Missense_Mutation p.A725D 0.40 unknown(0) TCGA-G4-6588-01 1 40137599 40137599 C T NT5C1A Missense_Mutation p.A38T 0.29 tolerated_low_confidence(0.81) benign(0.003) TCGA-G4-6588-01 1 40704987 40704987 A T RLF Missense_Mutation p.H1538L 0.36 deleterious(0.04) benign(0.021) TCGA-G4-6588-01 1 41092061 41092061 G A RIMS3 3'UTR 0.44 TCGA-G4-6588-01 1 43166583 43166583 G A YBX1 Missense_Mutation p.R291H 0.26 tolerated(0.22) benign(0.001) TCGA-G4-6588-01 1 43212447 43212447 A G LEPRE1 3'UTR 0.24 TCGA-G4-6588-01 1 43212981 43212981 C T LEPRE1 Missense_Mutation p.A673T 0.32 deleterious(0.02) probably_damaging(0.912) TCGA-G4-6588-01 1 43739526 43739526 G A TMEM125 3'UTR 0.33 TCGA-G4-6588-01 1 43772910 43772910 C - TIE1 Frame_Shift_Del p.P248Lfs*117 0.29 TCGA-G4-6588-01 1 43778158 43778158 G A TIE1 Missense_Mutation p.A605T 0.13 tolerated(0.48) benign(0.012) TCGA-G4-6588-01 1 43804304 43804304 C T MPL Missense_Mutation p.R102C 0.33 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 1 43908512 43908512 C T SZT2 Missense_Mutation p.P2668L 0.30 deleterious(0.02) probably_damaging(0.964) TCGA-G4-6588-01 1 44057079 44057079 G A PTPRF Nonsense_Mutation p.W462* 0.38 TCGA-G4-6588-01 1 44423680 44423680 C T IPO13 Silent p.P524P 0.23 TCGA-G4-6588-01 1 44437555 44437555 T C DPH2 Silent p.L327L 0.31 TCGA-G4-6588-01 1 44442444 44442444 G T ATP6V0B Splice_Site p.X117_splice 0.29 TCGA-G4-6588-01 1 45101593 45101593 G A RNF220 Intron 0.40 TCGA-G4-6588-01 1 45120356 45120356 C T TMEM53 Missense_Mutation p.A237T 0.33 tolerated(0.24) benign(0.016) TCGA-G4-6588-01 1 45120449 45120449 C T TMEM53 Missense_Mutation p.A206T 0.40 tolerated(0.52) benign(0.015) TCGA-G4-6588-01 1 45479815 45479815 T C UROD Intron 0.29 TCGA-G4-6588-01 1 45553827 45553827 A T ZSWIM5 Missense_Mutation p.D226E 0.07 deleterious(0.02) unknown(0) TCGA-G4-6588-01 1 45810443 45810443 G A TESK2 3'UTR 0.26 TCGA-G4-6588-01 1 45973112 45973112 C T MMACHC Missense_Mutation p.P56S 0.34 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 1 46073055 46073055 A - NASP Frame_Shift_Del p.T160Qfs*29 0.24 TCGA-G4-6588-01 1 46088777 46088777 C T CCDC17 Missense_Mutation p.R169H 0.24 tolerated(0.09) benign(0.123) TCGA-G4-6588-01 1 46269732 46269732 G T MAST2 Missense_Mutation p.E55D 0.29 tolerated_low_confidence(0.12) benign(0.001) TCGA-G4-6588-01 1 46494558 46494559 - T MAST2 Frame_Shift_Ins p.G727Wfs*14 0.24 TCGA-G4-6588-01 1 46662489 46662489 G A POMGNT1 Missense_Mutation p.R90C 0.14 benign(0.28) TCGA-G4-6588-01 1 46744956 46744956 A G LRRC41 Intron 0.09 TCGA-G4-6588-01 1 46810728 46810728 G A NSUN4 Missense_Mutation p.A117T 0.16 tolerated(0.61) benign(0.004) TCGA-G4-6588-01 1 47138994 47138994 C - TEX38 Frame_Shift_Del p.L165Cfs*2 0.47 TCGA-G4-6588-01 1 47905224 47905224 G A FOXD2 Missense_Mutation p.G473R 0.35 deleterious_low_confidence(0) unknown(0) TCGA-G4-6588-01 1 47905229 47905229 C A FOXD2 Missense_Mutation p.D474E 0.35 tolerated_low_confidence(0.43) unknown(0) TCGA-G4-6588-01 1 48694969 48694969 A - SLC5A9 Frame_Shift_Del p.T140Pfs*27 0.33 TCGA-G4-6588-01 1 48701446 48701446 G A SLC5A9 Missense_Mutation p.S421N 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 1 50659454 50659454 G A ELAVL4 Silent p.P141P 0.38 TCGA-G4-6588-01 1 53237195 53237195 C T ZYG11B Missense_Mutation p.R234W 0.19 deleterious(0.01) probably_damaging(0.96) TCGA-G4-6588-01 1 53543377 53543377 C - PODN Frame_Shift_Del p.P303Rfs*7 0.23 TCGA-G4-6588-01 1 53544292 53544292 G A PODN Silent p.A418A 0.43 TCGA-G4-6588-01 1 53608091 53608092 - C SLC1A7 Frame_Shift_Ins p.R11Efs*38 0.24 TCGA-G4-6588-01 1 53746369 53746369 G A LRP8 Missense_Mutation p.A129V 0.22 tolerated(0.4) probably_damaging(0.952) TCGA-G4-6588-01 1 53930444 53930444 C - DMRTB1 Frame_Shift_Del p.P297Rfs*13 0.46 TCGA-G4-6588-01 1 54284699 54284699 A G NDC1 Silent p.S216S 0.08 TCGA-G4-6588-01 1 60456258 60456258 G A C1orf87 3'UTR 0.29 TCGA-G4-6588-01 1 62566076 62566076 G A INADL Intron 0.33 TCGA-G4-6588-01 1 62672359 62672359 A G L1TD1 Missense_Mutation p.E20G 0.28 deleterious(0) unknown(0) TCGA-G4-6588-01 1 62675996 62675996 A G L1TD1 Missense_Mutation p.D517G 0.28 deleterious(0.01) possibly_damaging(0.773) TCGA-G4-6588-01 1 63282307 63282307 A T ATG4C Silent p.G74G 0.38 TCGA-G4-6588-01 1 6420717 6420718 - C ACOT7 Intron 0.30 TCGA-G4-6588-01 1 6445640 6445641 CA - ACOT7 Frame_Shift_Del p.V29Gfs*18 0.14 TCGA-G4-6588-01 1 64515592 64515592 C T ROR1 Silent p.C131C 0.11 TCGA-G4-6588-01 1 65095035 65095035 T C CACHD1 Intron 0.31 TCGA-G4-6588-01 1 65147770 65147770 A G CACHD1 Silent p.S1138S 0.29 TCGA-G4-6588-01 1 6609722 6609722 T C NOL9 Missense_Mutation p.Q218R 0.26 tolerated(0.35) benign(0.065) TCGA-G4-6588-01 1 67390426 67390426 T - WDR78 Frame_Shift_Del p.K30Rfs*28 0.29 TCGA-G4-6588-01 1 67450392 67450392 A G MIER1 Missense_Mutation p.N503D 0.41 tolerated(0.33) benign(0) TCGA-G4-6588-01 1 67792433 67792433 C T IL12RB2 Missense_Mutation p.P127L 0.29 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 1 70728267 70728267 G A ANKRD13C 3'UTR 0.35 TCGA-G4-6588-01 1 71513288 71513288 C T PTGER3 5'UTR 0.32 TCGA-G4-6588-01 1 74507391 74507391 A - LRRIQ3 Frame_Shift_Del p.F408Lfs*8 0.26 TCGA-G4-6588-01 1 77509992 77509992 G A ST6GALNAC5 Missense_Mutation p.R122H 0.33 probably_damaging(1) TCGA-G4-6588-01 1 78191321 78191321 G A USP33 Missense_Mutation p.P452L 0.34 tolerated(0.59) possibly_damaging(0.672) TCGA-G4-6588-01 1 78309042 78309042 C T FAM73A Nonsense_Mutation p.R316* 0.34 TCGA-G4-6588-01 1 7848164 7848164 G T PER3 Missense_Mutation p.Q150H 0.08 deleterious(0) possibly_damaging(0.781) TCGA-G4-6588-01 1 82417778 82417778 G T LPHN2 Missense_Mutation p.Q578H 0.34 deleterious(0) possibly_damaging(0.847) TCGA-G4-6588-01 1 8403808 8403808 T C SLC45A1 Missense_Mutation p.F661S 0.18 deleterious(0.01) benign(0.083) TCGA-G4-6588-01 1 85331221 85331221 T C LPAR3 Missense_Mutation p.N195D 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6588-01 1 85824512 85824514 CTT - DDAH1 In_Frame_Del p.E107del 0.29 TCGA-G4-6588-01 1 906536 906536 G A PLEKHN1 Missense_Mutation p.G219D 0.34 deleterious(0.03) possibly_damaging(0.477) TCGA-G4-6588-01 1 91182325 91182325 A - BARHL2 Frame_Shift_Del p.L143* 0.18 TCGA-G4-6588-01 1 91781737 91781737 A G HFM1 Missense_Mutation p.L968S 0.15 deleterious(0) probably_damaging(0.992) TCGA-G4-6588-01 1 92262901 92262901 C A TGFBR3 Missense_Mutation p.E63D 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 1 92498143 92498143 T A EPHX4 Missense_Mutation p.F105I 0.29 tolerated(0.09) possibly_damaging(0.46) TCGA-G4-6588-01 1 99470075 99470075 G A LPPR5 Silent p.R51R 0.25 TCGA-G4-6588-01 20 13610698 13610698 C G TASP1 Missense_Mutation p.G10R 0.39 tolerated_low_confidence(0.1) benign(0.029) TCGA-G4-6588-01 20 1551469 1551469 C T SIRPB1 Missense_Mutation p.G356S 0.20 tolerated(0.3) benign(0.004) TCGA-G4-6588-01 20 18395005 18395005 C T DZANK1 Missense_Mutation p.R410H 0.17 tolerated(0.68) benign(0.002) TCGA-G4-6588-01 20 19915804 19915804 T C RIN2 Missense_Mutation p.V89A 0.27 tolerated_low_confidence(0.4) benign(0.003) TCGA-G4-6588-01 20 2097644 2097644 A G STK35 Missense_Mutation p.K409E 0.31 tolerated(0.16) benign(0.089) TCGA-G4-6588-01 20 21492750 21492750 G A NKX2-2 Silent p.D211D 0.22 TCGA-G4-6588-01 20 23731354 23731354 G A CST1 Silent p.F50F 0.32 TCGA-G4-6588-01 20 25201924 25201924 T C ENTPD6 Missense_Mutation p.W334R 0.31 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 20 25261715 25261715 C T PYGB Missense_Mutation p.A457V 0.09 deleterious(0.01) possibly_damaging(0.803) TCGA-G4-6588-01 20 2542592 2542594 AAG - TMC2 In_Frame_Del p.K165del 0.38 TCGA-G4-6588-01 20 25439206 25439206 G A NINL Intron 0.50 TCGA-G4-6588-01 20 30381750 30381750 C A TPX2 Missense_Mutation p.P537T 0.30 deleterious(0) probably_damaging(0.943) TCGA-G4-6588-01 20 30433166 30433166 G A FOXS1 Silent p.P60P 0.30 TCGA-G4-6588-01 20 30618948 30618948 G A CCM2L 3'UTR 0.36 TCGA-G4-6588-01 20 3128620 3128620 G A FASTKD5 Missense_Mutation p.T366I 0.14 deleterious(0.02) probably_damaging(0.974) TCGA-G4-6588-01 20 3147820 3147820 G - LZTS3 5'UTR 0.24 TCGA-G4-6588-01 20 31661397 31661397 A G BPIFB3 Missense_Mutation p.T473A 0.32 deleterious(0.02) probably_damaging(0.977) TCGA-G4-6588-01 20 31671539 31671539 C T BPIFB4 Missense_Mutation p.A179V 0.35 tolerated_low_confidence(0.07) probably_damaging(0.989) TCGA-G4-6588-01 20 31984888 31984888 A G CDK5RAP1 Intron 0.35 TCGA-G4-6588-01 20 33337268 33337268 G A NCOA6 Silent p.N910N 0.29 TCGA-G4-6588-01 20 33338001 33338001 G - NCOA6 Frame_Shift_Del p.P666Rfs*12 0.26 TCGA-G4-6588-01 20 33584177 33584177 C T MYH7B Missense_Mutation p.A1033V 0.32 benign(0.006) TCGA-G4-6588-01 20 33587011 33587011 C T MYH7B Missense_Mutation p.A1490V 0.31 benign(0.141) TCGA-G4-6588-01 20 35386550 35386550 C T DSN1 Missense_Mutation p.R222H 0.25 tolerated(0.25) possibly_damaging(0.885) TCGA-G4-6588-01 20 35545174 35545174 G A SAMHD1 Missense_Mutation p.A338V 0.23 tolerated(0.13) benign(0.176) TCGA-G4-6588-01 20 35661224 35661224 A G RBL1 Silent p.N742N 0.30 TCGA-G4-6588-01 20 35690526 35690526 C A RBL1 Missense_Mutation p.Q348H 0.27 tolerated(0.08) benign(0.002) TCGA-G4-6588-01 20 35717461 35717461 G A RBL1 Missense_Mutation p.T74M 0.27 deleterious(0) probably_damaging(0.988) TCGA-G4-6588-01 20 36024692 36024692 G A SRC Silent p.Q227Q 0.29 TCGA-G4-6588-01 20 36869735 36869735 C A KIAA1755 Silent p.V266V 0.33 TCGA-G4-6588-01 20 37163767 37163767 G A RALGAPB Missense_Mutation p.V766I 0.33 tolerated(0.05) benign(0.399) TCGA-G4-6588-01 20 37518295 37518295 C T PPP1R16B Missense_Mutation p.T103I 0.23 deleterious(0.01) possibly_damaging(0.737) TCGA-G4-6588-01 20 3765580 3765580 C T CENPB Silent p.E517E 0.28 TCGA-G4-6588-01 20 3785283 3785283 T C CDC25B Missense_Mutation p.Y520H 0.24 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 20 40118656 40118656 T - CHD6 Frame_Shift_Del p.N481Tfs*10 0.17 TCGA-G4-6588-01 20 43053176 43053176 T A HNF4A Intron 0.50 TCGA-G4-6588-01 20 43246946 43246946 G A PKIG Missense_Mutation p.A58T 0.33 tolerated(1) benign(0.001) TCGA-G4-6588-01 20 43353450 43353450 T C WISP2 Missense_Mutation p.C117R 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 20 43535129 43535129 T C YWHAB 3'UTR 0.23 TCGA-G4-6588-01 20 43927088 43927088 C T MATN4 Missense_Mutation p.R383Q 0.44 probably_damaging(0.918) TCGA-G4-6588-01 20 43942215 43942215 C T RBPJL Nonsense_Mutation p.R243* 0.27 TCGA-G4-6588-01 20 43945393 43945393 C T RBPJL Missense_Mutation p.R450C 0.43 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 20 44574735 44574735 G A PCIF1 Missense_Mutation p.C470Y 0.36 deleterious(0) probably_damaging(0.973) TCGA-G4-6588-01 20 45169886 45169886 C A OCSTAMP 3'UTR 0.33 TCGA-G4-6588-01 20 45237581 45237581 C T SLC13A3 Intron 0.10 TCGA-G4-6588-01 20 4708578 4708578 C T PRND 3'UTR 0.26 TCGA-G4-6588-01 20 47266692 47266693 - G PREX1 Frame_Shift_Ins p.L957Pfs*50 0.21 TCGA-G4-6588-01 20 47630497 47630497 G T ARFGEF2 Missense_Mutation p.E1393D 0.23 tolerated(0.3) benign(0.033) TCGA-G4-6588-01 20 47734530 47734530 A G STAU1 Silent p.S431S 0.32 TCGA-G4-6588-01 20 48504441 48504441 G A SLC9A8 Missense_Mutation p.G588S 0.29 tolerated(0.36) benign(0.179) TCGA-G4-6588-01 20 49620511 49620511 G A KCNG1 3'UTR 0.29 TCGA-G4-6588-01 20 50244157 50244157 C T ATP9A Silent p.E609E 0.25 TCGA-G4-6588-01 20 50408410 50408410 G - SALL4 Frame_Shift_Del p.V205Cfs*35 0.26 TCGA-G4-6588-01 20 51871890 51871890 C T TSHZ2 Silent p.G631G 0.33 TCGA-G4-6588-01 20 52773733 52773733 C T CYP24A1 Silent p.A510A 0.37 TCGA-G4-6588-01 20 55758935 55758935 C T BMP7 Silent p.R267R 0.30 TCGA-G4-6588-01 20 56137839 56137839 A G PCK1 Missense_Mutation p.Y165C 0.23 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 20 57897438 57897438 C T EDN3 Missense_Mutation p.T185M 0.34 tolerated(0.07) possibly_damaging(0.828) TCGA-G4-6588-01 20 58349436 58349436 C T PHACTR3 Silent p.A355A 0.32 TCGA-G4-6588-01 20 6064732 6064732 G A FERMT1 Missense_Mutation p.A558V 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-G4-6588-01 20 60885546 60885546 A G LAMA5 Missense_Mutation p.V3510A 0.40 benign(0.032) TCGA-G4-6588-01 20 61048502 61048502 A G GATA5 Missense_Mutation p.M219T 0.16 deleterious(0) benign(0.05) TCGA-G4-6588-01 20 61341204 61341204 C T NTSR1 Silent p.D215D 0.37 TCGA-G4-6588-01 20 62071010 62071010 C T KCNQ2 Missense_Mutation p.G290S 0.31 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 20 62124595 62124595 C T EEF1A2 Missense_Mutation p.A223T 0.42 tolerated_low_confidence(0.05) benign(0.057) TCGA-G4-6588-01 20 62193424 62193424 C T HELZ2 Splice_Site p.X2177_splice 0.36 TCGA-G4-6588-01 20 62322169 62322169 G A RTEL1 Missense_Mutation p.A833T 0.18 tolerated(0.47) benign(0.005) TCGA-G4-6588-01 20 62328870 62328870 T C TNFRSF6B Missense_Mutation p.V205A 0.30 tolerated(0.79) benign(0) TCGA-G4-6588-01 20 62369847 62369847 G A RP4-583P15.14 Missense_Mutation p.A76T 0.39 tolerated(0.91) benign(0.001) TCGA-G4-6588-01 20 62572048 62572048 G A UCKL1 Missense_Mutation p.R401C 0.46 deleterious(0) probably_damaging(0.99) TCGA-G4-6588-01 20 6758961 6758962 - C BMP2 Frame_Shift_Ins p.T141Hfs*25 0.27 TCGA-G4-6588-01 20 865733 865733 C T ANGPT4 Missense_Mutation p.A275T 0.38 tolerated(0.31) benign(0.069) TCGA-G4-6588-01 20 9389282 9389282 C T PLCB4 Missense_Mutation p.R586C 0.30 deleterious(0) possibly_damaging(0.676) TCGA-G4-6588-01 21 18938052 18938052 T - CXADR 3'UTR 0.22 TCGA-G4-6588-01 21 27284056 27284056 C T APP Missense_Mutation p.E636K 0.32 tolerated(0.13) benign(0.079) TCGA-G4-6588-01 21 28306984 28306984 C T ADAMTS5 Missense_Mutation p.C497Y 0.29 deleterious(0) possibly_damaging(0.829) TCGA-G4-6588-01 21 30257542 30257542 T A N6AMT1 Missense_Mutation p.E42D 0.35 benign(0.001) TCGA-G4-6588-01 21 31661763 31661763 G - KRTAP25-1 Frame_Shift_Del p.Q16Kfs*21 0.14 TCGA-G4-6588-01 21 31744375 31744376 AG - KRTAP13-2 Frame_Shift_Del p.Y53* 0.26 TCGA-G4-6588-01 21 32253453 32253453 A G KRTAP11-1 Missense_Mutation p.C131R 0.39 tolerated(0.24) probably_damaging(0.944) TCGA-G4-6588-01 21 32575266 32575266 C T TIAM1 Missense_Mutation p.M817I 0.37 tolerated(0.39) benign(0.002) TCGA-G4-6588-01 21 33296913 33296913 C T HUNK Missense_Mutation p.T132M 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 21 33641253 33641253 T C MIS18A 3'UTR 0.26 TCGA-G4-6588-01 21 34132269 34132269 A G PAXBP1 Missense_Mutation p.Y338H 0.30 deleterious(0.02) probably_damaging(0.981) TCGA-G4-6588-01 21 34953674 34953674 C A DONSON Missense_Mutation p.Q428H 0.25 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 21 35821244 35821244 A G KCNE1 3'UTR 0.39 TCGA-G4-6588-01 21 39755554 39755554 G - ERG Frame_Shift_Del p.P411Rfs*25 0.30 TCGA-G4-6588-01 21 42647637 42647637 G A BACE2 3'UTR 0.37 TCGA-G4-6588-01 21 43833319 43833320 TC - UBASH3A Frame_Shift_Del p.L183Sfs*20 0.27 TCGA-G4-6588-01 21 44275794 44275794 G - WDR4 Frame_Shift_Del p.Q242Rfs*92 0.36 TCGA-G4-6588-01 21 45170384 45170384 A G PDXK Silent p.L156L 0.40 TCGA-G4-6588-01 21 45802623 45802623 G A TRPM2 Missense_Mutation p.R413Q 0.44 tolerated(0.18) benign(0.02) TCGA-G4-6588-01 21 45820225 45820225 G A TRPM2 Silent p.P764P 0.27 TCGA-G4-6588-01 21 45877262 45877262 C T LRRC3 Silent p.S245S 0.50 TCGA-G4-6588-01 21 45987883 45987883 C T TSPEAR Missense_Mutation p.R30H 0.35 tolerated(0.59) benign(0.004) TCGA-G4-6588-01 21 46011697 46011697 G - KRTAP10-6 Frame_Shift_Del p.C224Afs*157 0.35 TCGA-G4-6588-01 21 46276139 46276139 G A PTTG1IP Missense_Mutation p.R140W 0.42 deleterious(0) possibly_damaging(0.855) TCGA-G4-6588-01 21 46281096 46281096 G A PTTG1IP Missense_Mutation p.R87C 0.17 deleterious(0) possibly_damaging(0.9) TCGA-G4-6588-01 21 46689913 46689913 C T POFUT2 Missense_Mutation p.G285R 0.40 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 21 46888626 46888626 C - COL18A1 Frame_Shift_Del p.R373Gfs*27 0.15 TCGA-G4-6588-01 21 47581966 47581966 G A SPATC1L Missense_Mutation p.A187V 0.31 tolerated(0.18) benign(0.124) TCGA-G4-6588-01 21 47850445 47850445 C T PCNT Silent p.N2646N 0.38 TCGA-G4-6588-01 21 47974553 47974553 C - DIP2A Frame_Shift_Del p.P1075Rfs*15 0.28 TCGA-G4-6588-01 22 16287793 16287793 G T POTEH Nonsense_Mutation p.C31* 0.19 TCGA-G4-6588-01 22 16449219 16449219 G T OR11H1 Missense_Mutation p.P196T 0.26 tolerated(0.16) possibly_damaging(0.817) TCGA-G4-6588-01 22 17619025 17619025 G A CECR5 Silent p.H386H 0.32 TCGA-G4-6588-01 22 18640560 18640560 C T USP18 Missense_Mutation p.R44C 0.33 tolerated(0.18) benign(0.001) TCGA-G4-6588-01 22 19163948 19163950 CTT - SLC25A1 In_Frame_Del p.K269del 0.32 TCGA-G4-6588-01 22 19230436 19230436 C T CLTCL1 Missense_Mutation p.M181I 0.39 tolerated(0.35) benign(0.064) TCGA-G4-6588-01 22 20130522 20130522 C G ZDHHC8 Missense_Mutation p.P457A 0.31 tolerated(0.3) possibly_damaging(0.631) TCGA-G4-6588-01 22 20229908 20229908 G A RTN4R Missense_Mutation p.R250C 0.43 tolerated(0.06) probably_damaging(0.92) TCGA-G4-6588-01 22 20759785 20759785 T C ZNF74 Silent p.G154G 0.30 TCGA-G4-6588-01 22 21152911 21152911 A G PI4KA Missense_Mutation p.V690A 0.29 tolerated(1) benign(0.074) TCGA-G4-6588-01 22 21343922 21343922 A G LZTR1 Missense_Mutation p.D201G 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6588-01 22 22453531 22453531 C A IGLV8-61 Missense_Mutation p.L93I 0.27 tolerated(0.07) benign(0.261) TCGA-G4-6588-01 22 22697811 22697811 G A IGLV9-49 Silent p.L33L 0.33 TCGA-G4-6588-01 22 23741987 23741987 C T ZDHHC8P1 RNA 0.34 TCGA-G4-6588-01 22 25617370 25617370 G T CRYBB2 Splice_Site 0.09 TCGA-G4-6588-01 22 26118311 26118311 C T ADRBK2 Missense_Mutation p.A654V 0.21 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-G4-6588-01 22 26422485 26422485 T C MYO18B Missense_Mutation p.V2182A 0.32 tolerated(0.82) benign(0.002) TCGA-G4-6588-01 22 26860059 26860059 C T HPS4 Missense_Mutation p.A513T 0.32 tolerated(0.27) benign(0.209) TCGA-G4-6588-01 22 28378869 28378869 G A TTC28 Silent p.S2262S 0.32 TCGA-G4-6588-01 22 28559102 28559102 C T TTC28 Silent p.E473E 0.24 TCGA-G4-6588-01 22 29439348 29439348 C T ZNRF3 Missense_Mutation p.A188V 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 22 29449693 29449693 T - ZNRF3 3'UTR 0.21 TCGA-G4-6588-01 22 29696337 29696337 T - EWSR1 3'Flank 0.43 TCGA-G4-6588-01 22 29706534 29706534 C T GAS2L1 Missense_Mutation p.R247W 0.40 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 22 29833674 29833674 G A RFPL1 5'Flank 0.27 TCGA-G4-6588-01 22 30136672 30136672 G A ZMAT5 Nonsense_Mutation p.R80* 0.39 TCGA-G4-6588-01 22 31032452 31032452 G A SLC35E4 Silent p.P5P 0.46 TCGA-G4-6588-01 22 31485922 31485922 C - SMTN Frame_Shift_Del p.S239Afs*118 0.26 TCGA-G4-6588-01 22 31741056 31741056 G - PATZ1 Frame_Shift_Del p.P178Lfs*12 0.37 TCGA-G4-6588-01 22 32112315 32112315 C T PRR14L Missense_Mutation p.G504S 0.23 tolerated(0.1) probably_damaging(0.966) TCGA-G4-6588-01 22 32112334 32112334 A G PRR14L Silent p.F497F 0.35 TCGA-G4-6588-01 22 32113159 32113159 T C PRR14L Silent p.K222K 0.05 TCGA-G4-6588-01 22 32788296 32788296 A G RTCB Silent p.D447D 0.27 TCGA-G4-6588-01 22 32795686 32795686 C A RTCB Missense_Mutation p.W186C 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6588-01 22 35782960 35782960 G - HMOX1 Frame_Shift_Del p.G144Afs*43 0.29 TCGA-G4-6588-01 22 35789676 35789676 C - HMOX1 3'UTR 0.41 TCGA-G4-6588-01 22 37209691 37209691 G A PVALB Silent p.D101D 0.23 TCGA-G4-6588-01 22 37602719 37602719 C T SSTR3 Missense_Mutation p.S375N 0.34 tolerated(0.11) benign(0.002) TCGA-G4-6588-01 22 38254698 38254698 T C EIF3L Missense_Mutation p.L129P 0.24 deleterious(0) possibly_damaging(0.655) TCGA-G4-6588-01 22 38369635 38369635 G A SOX10 Missense_Mutation p.S423L 0.31 deleterious(0) possibly_damaging(0.692) TCGA-G4-6588-01 22 39135858 39135858 C T SUN2 Missense_Mutation p.A504T 0.25 tolerated(0.2) benign(0.046) TCGA-G4-6588-01 22 39262145 39262145 G T CBX6 3'UTR 0.47 TCGA-G4-6588-01 22 39639932 39639932 A G PDGFB Missense_Mutation p.C13R 0.20 tolerated(0.11) benign(0.433) TCGA-G4-6588-01 22 39911248 39911248 A C MIEF1 3'UTR 0.36 TCGA-G4-6588-01 22 40662663 40662663 G A TNRC6B Missense_Mutation p.G810D 0.34 deleterious(0.02) possibly_damaging(0.623) TCGA-G4-6588-01 22 40807714 40807714 G T MKL1 Missense_Mutation p.L826M 0.28 tolerated(0.08) probably_damaging(0.986) TCGA-G4-6588-01 22 41783435 41783435 C T TEF Missense_Mutation p.P80S 0.23 deleterious(0.04) probably_damaging(1) TCGA-G4-6588-01 22 41967924 41967924 G A CSDC2 5'UTR 0.28 TCGA-G4-6588-01 22 42394828 42394828 G A WBP2NL Silent p.A2A 0.33 TCGA-G4-6588-01 22 42475104 42475104 G A FAM109B 3'UTR 0.11 TCGA-G4-6588-01 22 43575969 43575969 T C TTLL12 Missense_Mutation p.D195G 0.20 deleterious(0) possibly_damaging(0.908) TCGA-G4-6588-01 22 43830968 43830968 C A MPPED1 Missense_Mutation p.P80H 0.23 deleterious(0.03) possibly_damaging(0.752) TCGA-G4-6588-01 22 44107394 44107394 T C EFCAB6 Missense_Mutation p.Y331C 0.34 tolerated(0.28) benign(0.026) TCGA-G4-6588-01 22 44333060 44333060 T C PNPLA3 Missense_Mutation p.L296P 0.16 tolerated(0.42) benign(0.001) TCGA-G4-6588-01 22 44543761 44543761 C T PARVB Silent p.L278L 0.34 TCGA-G4-6588-01 22 45316275 45316275 T C PHF21B Intron 0.30 TCGA-G4-6588-01 22 46751891 46751891 C A TRMU Silent p.P341P 0.33 TCGA-G4-6588-01 22 50436143 50436143 C T IL17REL Missense_Mutation p.R283Q 0.25 deleterious(0) possibly_damaging(0.658) TCGA-G4-6588-01 22 50512724 50512724 C G MLC1 Missense_Mutation p.G212A 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6588-01 22 50615796 50615796 C T PANX2 Missense_Mutation p.R219C 0.40 deleterious(0.02) probably_damaging(0.964) TCGA-G4-6588-01 22 50649062 50649062 A G SELO Missense_Mutation p.Y358C 0.16 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 22 50659271 50659271 C - TUBGCP6 Frame_Shift_Del p.E1173Sfs*151 0.10 TCGA-G4-6588-01 22 50688828 50688828 A G HDAC10 Intron 0.27 TCGA-G4-6588-01 22 50704905 50704905 G A MAPK11 Intron 0.24 TCGA-G4-6588-01 22 50957907 50957907 C T NCAPH2 Intron 0.50 TCGA-G4-6588-01 22 50967733 50967733 C A TYMP Missense_Mutation p.M83I 0.36 deleterious(0.01) probably_damaging(0.925) TCGA-G4-6588-01 22 50987864 50987864 G A KLHDC7B Silent p.P423P 0.34 TCGA-G4-6588-01 22 51041769 51041771 GAG - MAPK8IP2 In_Frame_Del p.E103del 0.35 TCGA-G4-6588-01 2 100171152 100171152 T C AFF3 Missense_Mutation p.S1135G 0.10 tolerated(0.43) benign(0.037) TCGA-G4-6588-01 2 101592011 101592011 C T NPAS2 Silent p.S458S 0.27 TCGA-G4-6588-01 2 101627971 101627971 C T TBC1D8 Silent p.S938S 0.29 TCGA-G4-6588-01 2 102507646 102507646 C T MAP4K4 Missense_Mutation p.R1219W 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6588-01 2 103059782 103059782 A G IL18RAP Missense_Mutation p.S307G 0.28 tolerated(0.38) benign(0.022) TCGA-G4-6588-01 2 103335367 103335367 G A MFSD9 Missense_Mutation p.R313C 0.31 deleterious(0) possibly_damaging(0.862) TCGA-G4-6588-01 2 108488428 108488428 A G RGPD4 Missense_Mutation p.D1323G 0.33 deleterious(0) probably_damaging(0.978) TCGA-G4-6588-01 2 109429309 109429309 A - CCDC138 Frame_Shift_Del p.G324Efs*9 0.24 TCGA-G4-6588-01 2 109746233 109746233 C T SH3RF3 Silent p.R79R 0.35 TCGA-G4-6588-01 2 110373424 110373424 C T SOWAHC Missense_Mutation p.A453V 0.37 tolerated(0.24) benign(0.004) TCGA-G4-6588-01 2 11053802 11053802 G A KCNF1 Missense_Mutation p.R417H 0.40 tolerated(0.07) possibly_damaging(0.649) TCGA-G4-6588-01 2 112686781 112686781 C A MERTK Missense_Mutation p.P49Q 0.31 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-G4-6588-01 2 11351960 11351960 T - ROCK2 Frame_Shift_Del p.S684Afs*5 0.28 TCGA-G4-6588-01 2 113532620 113532620 A C IL1A 3'UTR 0.34 TCGA-G4-6588-01 2 113940650 113940650 C A PSD4 Missense_Mutation p.P206H 0.38 deleterious_low_confidence(0.03) benign(0.023) TCGA-G4-6588-01 2 114256812 114256812 C T FOXD4L1 5'UTR 0.23 TCGA-G4-6588-01 2 116548694 116548694 A G DPP10 Silent p.E527E 0.07 TCGA-G4-6588-01 2 119914433 119914433 C T C1QL2 Missense_Mutation p.G270E 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6588-01 2 128322879 128322879 C T MYO7B Silent p.D68D 0.33 TCGA-G4-6588-01 2 128462014 128462014 A G WDR33 3'UTR 0.07 TCGA-G4-6588-01 2 130832316 130832316 C T POTEF Missense_Mutation p.R910H 0.13 deleterious_low_confidence(0.03) probably_damaging(0.962) TCGA-G4-6588-01 2 130911502 130911502 G A SMPD4 Missense_Mutation p.R595C 0.36 deleterious(0) probably_damaging(0.984) TCGA-G4-6588-01 2 131104008 131104008 C T IMP4 Silent p.T281T 0.36 TCGA-G4-6588-01 2 131132322 131132322 G A PTPN18 3'UTR 0.43 TCGA-G4-6588-01 2 131523005 131523005 T - AMER3 3'UTR 0.19 TCGA-G4-6588-01 2 132274462 132274462 G A AC093838.4 RNA 0.35 TCGA-G4-6588-01 2 132289309 132289309 T C CCDC74A Missense_Mutation p.L206P 0.26 deleterious(0.02) benign(0.414) TCGA-G4-6588-01 2 133402969 133402969 C T GPR39 Silent p.S384S 0.50 TCGA-G4-6588-01 2 135012032 135012032 A G MGAT5 Missense_Mutation p.T20A 0.37 tolerated(0.07) benign(0.01) TCGA-G4-6588-01 2 136481598 136481598 C T R3HDM1 Silent p.G1012G 0.36 TCGA-G4-6588-01 2 136570463 136570463 G A LCT Missense_Mutation p.P591S 0.30 tolerated(0.81) benign(0.002) TCGA-G4-6588-01 2 136587196 136587196 C T LCT Silent p.E257E 0.30 TCGA-G4-6588-01 2 138739107 138739107 T - HNMT Intron 0.33 TCGA-G4-6588-01 2 141806710 141806710 G A LRP1B Missense_Mutation p.A545V 0.28 possibly_damaging(0.483) TCGA-G4-6588-01 2 143746439 143746439 T C KYNU Intron 0.27 TCGA-G4-6588-01 2 14776253 14776253 T - FAM84A 3'UTR 0.29 TCGA-G4-6588-01 2 149543883 149543883 C T EPC2 Silent p.H787H 0.32 TCGA-G4-6588-01 2 152390750 152390750 G A NEB Intron 0.34 TCGA-G4-6588-01 2 152483594 152483594 C T NEB Silent p.P3423P 0.28 TCGA-G4-6588-01 2 152544228 152544228 C A NEB Missense_Mutation p.W812L 0.25 benign(0.114) TCGA-G4-6588-01 2 152550899 152550899 G A NEB Missense_Mutation p.L612F 0.29 probably_damaging(0.998) TCGA-G4-6588-01 2 157439411 157439411 G A GPD2 Missense_Mutation p.R722H 0.31 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 2 160053257 160053257 G A TANC1 Missense_Mutation p.A1040T 0.38 deleterious(0.01) probably_damaging(1) TCGA-G4-6588-01 2 160239070 160239070 C A BAZ2B Missense_Mutation p.E1335D 0.32 benign(0.039) TCGA-G4-6588-01 2 160755444 160755444 C A LY75-CD302 Missense_Mutation p.R74L 0.28 deleterious(0) probably_damaging(0.969) TCGA-G4-6588-01 2 162081148 162081148 T C TANK Silent p.N137N 0.33 TCGA-G4-6588-01 2 162273537 162273537 G A TBR1 Missense_Mutation p.V206M 0.31 deleterious(0) probably_damaging(0.992) TCGA-G4-6588-01 2 163215668 163215668 G A GCA Splice_Site p.X190_splice 0.28 TCGA-G4-6588-01 2 163292018 163292018 G A KCNH7 Silent p.G548G 0.27 TCGA-G4-6588-01 2 163695046 163695046 G A KCNH7 5'UTR 0.40 TCGA-G4-6588-01 2 165557127 165557127 C T COBLL1 Silent p.L494L 0.33 TCGA-G4-6588-01 2 166611530 166611530 C T GALNT3 Missense_Mutation p.R479H 0.08 deleterious(0.03) possibly_damaging(0.8) TCGA-G4-6588-01 2 166731159 166731159 A G TTC21B 3'UTR 0.29 TCGA-G4-6588-01 2 167992448 167992448 G A XIRP2 Silent p.S146S 0.38 TCGA-G4-6588-01 2 168105800 168105800 C T XIRP2 Missense_Mutation p.S2633L 0.37 benign(0.006) TCGA-G4-6588-01 2 170938519 170938519 G A UBR3 3'UTR 0.29 TCGA-G4-6588-01 2 171323204 171323204 T C MYO3B Silent p.F999F 0.24 TCGA-G4-6588-01 2 171678597 171678597 C T GAD1 Missense_Mutation p.T28M 0.28 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-G4-6588-01 2 173368938 173368990 ACAGTGGATCACAAAGTGGAACGAAAATGAAAGCTACTCATAGCGGGGGCCTA CAGTGGATCACAAAGTGGAACGAAAATGAAAGCTACTCATAGCGGGGGCCT ITGA6 Missense_Mutation 0.10 TCGA-G4-6588-01 2 175202123 175202123 G A AC018470.1 Missense_Mutation p.T10M 0.30 unknown(0) TCGA-G4-6588-01 2 176803096 176803096 A G KIAA1715 Silent p.C276C 0.27 TCGA-G4-6588-01 2 178937161 178937161 C T PDE11A Missense_Mutation p.A2T 0.29 tolerated_low_confidence(0.5) benign(0.007) TCGA-G4-6588-01 2 179455412 179455412 G A TTN Missense_Mutation p.A20347V 0.27 TCGA-G4-6588-01 2 179477586 179477586 T C TTN Missense_Mutation p.Y16621C 0.26 TCGA-G4-6588-01 2 179576739 179576739 C T TTN Missense_Mutation p.G9273E 0.30 TCGA-G4-6588-01 2 179577851 179577851 C T TTN Missense_Mutation p.A9004T 0.32 TCGA-G4-6588-01 2 179606235 179606235 T - TTN Frame_Shift_Del p.I3909Lfs*36 0.24 TCGA-G4-6588-01 2 179616341 179616341 G T TTN Intron 0.33 TCGA-G4-6588-01 2 179665179 179665179 C T TTN Missense_Mutation p.V176I 0.07 TCGA-G4-6588-01 2 189871077 189871077 C T COL3A1 Missense_Mutation p.R1034C 0.18 probably_damaging(0.996) TCGA-G4-6588-01 2 189903996 189903996 A G COL5A2 Splice_Site p.X1309_splice 0.39 TCGA-G4-6588-01 2 190541314 190541315 - T ANKAR Frame_Shift_Ins p.E36* 0.35 TCGA-G4-6588-01 2 190608108 190608108 A - ANKAR Frame_Shift_Del p.N1308Ifs*14 0.25 TCGA-G4-6588-01 2 190738288 190738288 T C PMS1 Missense_Mutation p.V847A 0.30 deleterious(0.03) benign(0.031) TCGA-G4-6588-01 2 190738360 190738360 G A PMS1 Missense_Mutation p.R871H 0.18 deleterious(0.01) probably_damaging(0.95) TCGA-G4-6588-01 2 191066498 191066499 - A C2orf88 3'UTR 0.24 TCGA-G4-6588-01 2 191843633 191843633 G A STAT1 Missense_Mutation p.R608W 0.42 deleterious(0.02) probably_damaging(0.968) TCGA-G4-6588-01 2 1926900 1926900 T C MYT1L Missense_Mutation p.D214G 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-G4-6588-01 2 198950304 198950304 A G PLCL1 Missense_Mutation p.N688S 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 2 201436992 201436992 A - SGOL2 Frame_Shift_Del p.G644Vfs*18 0.23 TCGA-G4-6588-01 2 202632041 202632041 G A ALS2 Missense_Mutation p.P29L 0.26 deleterious(0.01) benign(0) TCGA-G4-6588-01 2 203395567 203395567 C T BMPR2 Silent p.L340L 0.22 TCGA-G4-6588-01 2 203395568 203395568 T A BMPR2 Missense_Mutation p.L340Q 0.23 deleterious(0) probably_damaging(0.993) TCGA-G4-6588-01 2 203397347 203397347 G T BMPR2 Nonsense_Mutation p.G390* 0.32 TCGA-G4-6588-01 2 203972486 203972486 G T NBEAL1 Missense_Mutation p.Q479H 0.31 tolerated(0.44) possibly_damaging(0.832) TCGA-G4-6588-01 2 204292151 204292151 C T ABI2 3'UTR 0.30 TCGA-G4-6588-01 2 20648945 20648945 T C RHOB 3'UTR 0.23 TCGA-G4-6588-01 2 206628529 206628529 C T NRP2 Missense_Mutation p.R726C 0.41 deleterious(0.01) possibly_damaging(0.627) TCGA-G4-6588-01 2 207559596 207559596 C T DYTN Missense_Mutation p.R242H 0.21 tolerated(0.11) benign(0.063) TCGA-G4-6588-01 2 20824574 20824574 C A HS1BP3 Missense_Mutation p.E234D 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6588-01 2 209025577 209025577 C - CRYGA Frame_Shift_Del p.G159Vfs*9 0.34 TCGA-G4-6588-01 2 212989590 212989591 - AG ERBB4 Frame_Shift_Ins p.D41Lfs*26 0.25 TCGA-G4-6588-01 2 214149312 214149312 G A SPAG16 Silent p.A35A 0.17 TCGA-G4-6588-01 2 216257753 216257753 T C FN1 Missense_Mutation p.T1324A 0.35 tolerated(0.14) possibly_damaging(0.558) TCGA-G4-6588-01 2 217069112 217069112 A G XRCC5 Missense_Mutation p.D726G 0.33 deleterious(0) possibly_damaging(0.833) TCGA-G4-6588-01 2 217142540 217142540 G A MARCH4 Silent p.A240A 0.31 TCGA-G4-6588-01 2 219146849 219146849 C T TMBIM1 Missense_Mutation p.A6T 0.30 deleterious(0.03) probably_damaging(0.99) TCGA-G4-6588-01 2 219269061 219269061 G T CTDSP1 Missense_Mutation p.E233D 0.31 deleterious(0) probably_damaging(0.989) TCGA-G4-6588-01 2 219509157 219509157 T C ZNF142 Silent p.T694T 0.36 TCGA-G4-6588-01 2 219878727 219878727 C T CCDC108 Silent p.E1214E 0.16 TCGA-G4-6588-01 2 219886563 219886563 G T CCDC108 Silent p.T1023T 0.33 TCGA-G4-6588-01 2 219922288 219922288 G A IHH Silent p.G148G 0.14 TCGA-G4-6588-01 2 219925023 219925023 A G IHH Missense_Mutation p.V56A 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-G4-6588-01 2 220108031 220108031 G A GLB1L Silent p.D26D 0.34 TCGA-G4-6588-01 2 220416384 220416384 C T OBSL1 Silent p.P1850P 0.34 TCGA-G4-6588-01 2 220428120 220428120 G A OBSL1 Silent p.C879C 0.19 TCGA-G4-6588-01 2 220493293 220493293 G A SLC4A3 Splice_Site p.X73_splice 0.25 TCGA-G4-6588-01 2 223065773 223065774 CG - PAX3 3'UTR 0.14 TCGA-G4-6588-01 2 223066021 223066022 - A PAX3 Intron 0.28 TCGA-G4-6588-01 2 223169588 223169588 C T CCDC140 3'UTR 0.36 TCGA-G4-6588-01 2 225422490 225422490 A G CUL3 Silent p.S50S 0.33 TCGA-G4-6588-01 2 225796311 225796311 A G DOCK10 Silent p.N66N 0.30 TCGA-G4-6588-01 2 227661789 227661789 G A IRS1 Missense_Mutation p.P556S 0.27 tolerated(0.22) possibly_damaging(0.879) TCGA-G4-6588-01 2 228228493 228228493 C T TM4SF20 Missense_Mutation p.G213S 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 2 230661315 230661315 A - TRIP12 Frame_Shift_Del p.S1195Lfs*24 0.18 TCGA-G4-6588-01 2 230670463 230670463 A G TRIP12 Missense_Mutation p.L803S 0.17 tolerated(0.57) benign(0.004) TCGA-G4-6588-01 2 231048328 231048328 T C SP110 Silent p.S436S 0.24 TCGA-G4-6588-01 2 231380343 231380343 T A SP100 Intron 0.21 TCGA-G4-6588-01 2 231742818 231742820 CCT - ITM2C 3'UTR 0.25 TCGA-G4-6588-01 2 231973673 231973673 A C HTR2B Missense_Mutation p.L335R 0.34 deleterious(0) possibly_damaging(0.478) TCGA-G4-6588-01 2 232263347 232263347 C T B3GNT7 Missense_Mutation p.A306V 0.50 deleterious(0.03) possibly_damaging(0.493) TCGA-G4-6588-01 2 233245152 233245152 G A ALPP Missense_Mutation p.R272H 0.19 tolerated(0.06) benign(0.094) TCGA-G4-6588-01 2 233791863 233791863 C T NGEF Silent p.T139T 0.18 TCGA-G4-6588-01 2 233925309 233925309 G A INPP5D Missense_Mutation p.A41T 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 2 234372891 234372891 C A DGKD Missense_Mutation p.P1090T 0.35 tolerated(0.75) benign(0.028) TCGA-G4-6588-01 2 234847746 234847746 C A TRPM8 Silent p.G151G 0.24 TCGA-G4-6588-01 2 234905121 234905121 T C TRPM8 Missense_Mutation p.C1031R 0.17 tolerated(0.36) benign(0.293) TCGA-G4-6588-01 2 237103538 237103538 C A ASB18 Nonsense_Mutation p.E460* 0.14 TCGA-G4-6588-01 2 237489949 237489949 C T ACKR3 Missense_Mutation p.H281Y 0.17 tolerated(0.36) possibly_damaging(0.745) TCGA-G4-6588-01 2 238275487 238275487 G A COL6A3 Silent p.I1781I 0.37 TCGA-G4-6588-01 2 23862063 23862063 C T KLHL29 Missense_Mutation p.R114W 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G4-6588-01 2 238722320 238722320 A - RBM44 Frame_Shift_Del p.D26Ifs*23 0.28 TCGA-G4-6588-01 2 239059552 239059552 A G KLHL30 Missense_Mutation p.D528G 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-G4-6588-01 2 240961663 240961663 C T NDUFA10 Missense_Mutation p.S57N 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 2 241402810 241402810 A G GPC1 Missense_Mutation p.Y255C 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 2 241898811 241898811 C T AC104809.3 Missense_Mutation p.R907C 0.40 tolerated(0.1) benign(0.075) TCGA-G4-6588-01 2 241969822 241969822 G A SNED1 Missense_Mutation p.R112H 0.19 deleterious(0) probably_damaging(0.932) TCGA-G4-6588-01 2 242011107 242011107 G A SNED1 Missense_Mutation p.A1236T 0.47 tolerated(0.46) benign(0.002) TCGA-G4-6588-01 2 242011289 242011289 A G SNED1 Silent p.R1271R 0.39 TCGA-G4-6588-01 2 242035308 242035308 A - MTERFD2 3'UTR 0.26 TCGA-G4-6588-01 2 242041696 242041698 AGA - MTERFD2 5'UTR 0.30 TCGA-G4-6588-01 2 24253855 24253855 G A C2orf44 Missense_Mutation p.A705V 0.10 deleterious(0.01) benign(0.395) TCGA-G4-6588-01 2 242610149 242610149 C A ATG4B Missense_Mutation p.F322L 0.27 tolerated(0.12) benign(0.05) TCGA-G4-6588-01 2 242695222 242695222 T C D2HGDH Intron 0.17 TCGA-G4-6588-01 2 242794814 242794814 G A PDCD1 Missense_Mutation p.A132V 0.27 tolerated(0.59) benign(0.021) TCGA-G4-6588-01 2 24299208 24299208 G A SF3B14 5'UTR 0.33 TCGA-G4-6588-01 2 24522816 24522816 G A ITSN2 Nonsense_Mutation p.R436* 0.31 TCGA-G4-6588-01 2 25095463 25095463 G T ADCY3 Missense_Mutation p.N267K 0.21 tolerated(0.36) possibly_damaging(0.765) TCGA-G4-6588-01 2 25470562 25470562 G A DNMT3A Silent p.S304S 0.37 TCGA-G4-6588-01 2 25965307 25965307 C T ASXL2 Missense_Mutation p.S1300N 0.27 deleterious(0) probably_damaging(0.971) TCGA-G4-6588-01 2 26679513 26679513 C T DRC1 3'UTR 0.31 TCGA-G4-6588-01 2 272080 272081 - C ACP1 Intron 0.33 TCGA-G4-6588-01 2 27357171 27357171 C T PREB Missense_Mutation p.G40D 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 2 27361296 27361296 C A C2orf53 5'UTR 0.30 TCGA-G4-6588-01 2 27423438 27423438 C T SLC5A6 Missense_Mutation p.D592N 0.25 tolerated(0.12) benign(0.003) TCGA-G4-6588-01 2 27440021 27440021 T - ATRAID 3'UTR 0.60 TCGA-G4-6588-01 2 27527862 27527862 A G TRIM54 Silent p.A225A 0.27 TCGA-G4-6588-01 2 27530316 27530316 G T UCN 3'UTR 0.31 TCGA-G4-6588-01 2 27663739 27663739 A G NRBP1 Missense_Mutation p.T421A 0.25 tolerated(0.81) benign(0.021) TCGA-G4-6588-01 2 27876402 27876402 A C SUPT7L Missense_Mutation p.S399A 0.36 tolerated_low_confidence(0.17) benign(0.004) TCGA-G4-6588-01 2 28002338 28002338 C T MRPL33 Missense_Mutation p.R63C 0.16 tolerated(0.07) possibly_damaging(0.868) TCGA-G4-6588-01 2 28004632 28004632 T C RBKS Silent p.G273G 0.21 TCGA-G4-6588-01 2 29063044 29063044 G A SPDYA Missense_Mutation p.A187T 0.30 deleterious(0.01) possibly_damaging(0.775) TCGA-G4-6588-01 2 29245127 29245127 G A FAM179A Silent p.P488P 0.38 TCGA-G4-6588-01 2 29404555 29404555 T C CLIP4 Silent p.G638G 0.08 TCGA-G4-6588-01 2 30454570 30454570 T C LBH 5'UTR 0.17 TCGA-G4-6588-01 2 31400631 31400631 G A CAPN14 Silent p.H612H 0.33 TCGA-G4-6588-01 2 32475317 32475317 T - NLRC4 Frame_Shift_Del p.N539Tfs*8 0.29 TCGA-G4-6588-01 2 32740238 32740238 A - BIRC6 Frame_Shift_Del p.K3585Sfs*8 0.22 TCGA-G4-6588-01 2 33045960 33045960 G A TTC27 Silent p.V829V 0.33 TCGA-G4-6588-01 2 33413893 33413893 G A LTBP1 Missense_Mutation p.C559Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 2 33952455 33952455 C T AC009499.1 Intron 0.41 TCGA-G4-6588-01 2 37129804 37129804 C T STRN Silent p.T194T 0.31 TCGA-G4-6588-01 2 38301663 38301664 - G CYP1B1 Frame_Shift_Ins p.R290Pfs*37 0.30 TCGA-G4-6588-01 2 39024986 39024986 T - DHX57 3'UTR 0.32 TCGA-G4-6588-01 2 39530251 39530251 A G MAP4K3 Intron 0.27 TCGA-G4-6588-01 2 43452622 43452623 - C ZFP36L2 Frame_Shift_Ins p.G108Rfs*18 0.26 TCGA-G4-6588-01 2 43801948 43801950 AGA - THADA In_Frame_Del p.L419del 0.36 TCGA-G4-6588-01 2 44502755 44502755 T C SLC3A1 Silent p.N27N 0.22 TCGA-G4-6588-01 2 51254788 51254788 C T NRXN1 Silent p.P208P 0.23 TCGA-G4-6588-01 2 53977937 53977937 G A ASB3 Missense_Mutation p.T148M 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-G4-6588-01 2 54163926 54163926 A G PSME4 Missense_Mutation p.V245A 0.34 tolerated(0.24) benign(0.027) TCGA-G4-6588-01 2 54483006 54483006 C T TSPYL6 Missense_Mutation p.A95T 0.37 tolerated(0.94) benign(0.003) TCGA-G4-6588-01 2 54895608 54895608 G A SPTBN1 Missense_Mutation p.V2333I 0.10 tolerated(0.47) benign(0.095) TCGA-G4-6588-01 2 55197413 55197413 C T EML6 3'UTR 0.26 TCGA-G4-6588-01 2 55476540 55476540 G A MTIF2 Silent p.S324S 0.32 TCGA-G4-6588-01 2 56420072 56420072 C T CCDC85A Missense_Mutation p.P246L 0.33 tolerated_low_confidence(0.06) possibly_damaging(0.73) TCGA-G4-6588-01 2 56420175 56420175 G T CCDC85A Missense_Mutation p.E280D 0.19 tolerated_low_confidence(0.05) probably_damaging(0.986) TCGA-G4-6588-01 2 5832808 5832808 C T SOX11 5'UTR 0.38 TCGA-G4-6588-01 2 61575118 61575118 T C USP34 Silent p.T724T 0.13 TCGA-G4-6588-01 2 62733278 62733278 T C TMEM17 5'UTR 0.32 TCGA-G4-6588-01 2 63665040 63665040 T A WDPCP Intron 0.25 TCGA-G4-6588-01 2 64819204 64819204 T - AFTPH 3'UTR 0.24 TCGA-G4-6588-01 2 65659305 65659305 G T SPRED2 5'UTR 0.36 TCGA-G4-6588-01 2 67631686 67631686 A G ETAA1 Silent p.Q624Q 0.29 TCGA-G4-6588-01 2 67631849 67631849 A G ETAA1 Missense_Mutation p.M679V 0.26 tolerated(1) benign(0.007) TCGA-G4-6588-01 2 68692187 68692187 G A FBXO48 Nonsense_Mutation p.Q31* 0.27 TCGA-G4-6588-01 2 68765120 68765120 T C APLF Silent p.H307H 0.28 TCGA-G4-6588-01 2 70188517 70188517 C T ASPRV1 Missense_Mutation p.V102I 0.36 tolerated(0.56) benign(0.006) TCGA-G4-6588-01 2 71681094 71681094 C T DYSF 5'UTR 0.38 TCGA-G4-6588-01 2 71709035 71709035 C - DYSF Frame_Shift_Del p.L60Wfs*92 0.31 TCGA-G4-6588-01 2 71839796 71839797 - C DYSF Frame_Shift_Ins p.I1419Hfs*8 0.27 TCGA-G4-6588-01 2 72371204 72371204 T C CYP26B1 Missense_Mutation p.T115A 0.15 tolerated(0.44) benign(0.021) TCGA-G4-6588-01 2 73430135 73430135 G A NOTO Missense_Mutation p.R114H 0.37 tolerated(0.31) benign(0.004) TCGA-G4-6588-01 2 73490806 73490806 C A FBXO41 Missense_Mutation p.R692M 0.10 deleterious(0) probably_damaging(0.995) TCGA-G4-6588-01 2 73678591 73678591 C T ALMS1 Missense_Mutation p.A1645V 0.39 benign(0.09) TCGA-G4-6588-01 2 73901106 73901106 G A ALMS1P RNA 0.31 TCGA-G4-6588-01 2 74328807 74328807 C T TET3 Missense_Mutation p.A1496V 0.12 tolerated(0.62) benign(0.002) TCGA-G4-6588-01 2 74480208 74480208 G A SLC4A5 Silent p.I387I 0.41 TCGA-G4-6588-01 2 75929272 75929272 T C GCFC2 Intron 0.20 TCGA-G4-6588-01 2 84904212 84904212 G A DNAH6 Missense_Mutation p.M2232I 0.19 tolerated(0.08) benign(0.085) TCGA-G4-6588-01 2 85554424 85554424 G A TGOLN2 Missense_Mutation p.A144V 0.34 tolerated(0.16) possibly_damaging(0.873) TCGA-G4-6588-01 2 85576685 85576685 A G RETSAT Silent p.S273S 0.15 TCGA-G4-6588-01 2 85768962 85768962 T C MAT2A Missense_Mutation p.F139S 0.30 deleterious(0) probably_damaging(0.991) TCGA-G4-6588-01 2 85893791 85893791 T C SFTPB Silent p.Q126Q 0.43 TCGA-G4-6588-01 2 86378498 86378498 T C IMMT Silent p.E441E 0.10 TCGA-G4-6588-01 2 86434315 86434315 C T MRPL35 Silent p.P81P 0.34 TCGA-G4-6588-01 2 86849967 86849967 G A RNF103-CHMP3 Intron 0.21 TCGA-G4-6588-01 2 88407928 88407928 C T SMYD1 Missense_Mutation p.A395V 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-G4-6588-01 2 89100800 89100800 A - ANKRD36BP2 RNA 0.24 TCGA-G4-6588-01 2 89161435 89161435 C T IGKJ1 Missense_Mutation p.%3D 0.28 TCGA-G4-6588-01 2 89476002 89476002 T C IGKV2-24 Missense_Mutation p.Y57C 0.29 deleterious(0.02) possibly_damaging(0.509) TCGA-G4-6588-01 2 89544273 89544273 T C IGKV2-30 Silent p.T117T 0.29 TCGA-G4-6588-01 2 89568212 89568212 A G IGKV1-33 Silent p.A7A 0.51 TCGA-G4-6588-01 2 89976220 89976220 C A IGKV2D-30 Missense_Mutation p.L31M 0.26 tolerated(0.06) benign(0.422) TCGA-G4-6588-01 2 96049824 96049824 C T KCNIP3 3'UTR 0.44 TCGA-G4-6588-01 2 96458248 96458248 G A AC008268.2 RNA 0.21 TCGA-G4-6588-01 2 96521797 96521797 A - ANKRD36C Frame_Shift_Del p.F431Lfs*4 0.25 TCGA-G4-6588-01 2 9668005 9668005 G A ADAM17 Missense_Mutation p.R177C 0.27 deleterious(0) probably_damaging(0.972) TCGA-G4-6588-01 2 96687999 96687999 C T GPAT2 Missense_Mutation p.A766T 0.30 tolerated(0.48) possibly_damaging(0.682) TCGA-G4-6588-01 2 96799234 96799234 G A ASTL Missense_Mutation p.R129C 0.36 deleterious(0.01) possibly_damaging(0.893) TCGA-G4-6588-01 2 97039214 97039217 TGTT - NCAPH 3'UTR 0.31 TCGA-G4-6588-01 2 97519207 97519207 C T ANKRD39 Silent p.A113A 0.24 TCGA-G4-6588-01 2 97587283 97587283 G A FAM178B Silent p.L466L 0.25 TCGA-G4-6588-01 2 98277066 98277066 C A ACTR1B Nonsense_Mutation p.E53* 0.23 TCGA-G4-6588-01 2 99439465 99439465 G A KIAA1211L Missense_Mutation p.A424V 0.19 tolerated(0.1) possibly_damaging(0.695) TCGA-G4-6588-01 3 10016157 10016157 G A EMC3 Missense_Mutation p.T108I 0.22 deleterious(0.02) possibly_damaging(0.549) TCGA-G4-6588-01 3 101136589 101136589 T A SENP7 Silent p.G110G 0.26 TCGA-G4-6588-01 3 10114996 10114996 A - FANCD2 Frame_Shift_Del p.N890Ifs*14 0.29 TCGA-G4-6588-01 3 10362610 10362610 C G SEC13 Intron 0.31 TCGA-G4-6588-01 3 10491111 10491112 - C ATP2B2 Frame_Shift_Ins p.T40Hfs*2 0.35 TCGA-G4-6588-01 3 105422903 105422903 G A CBLB Missense_Mutation p.P508S 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 3 107884331 107884331 G A IFT57 Nonsense_Mutation p.R331* 0.31 TCGA-G4-6588-01 3 109049440 109049440 C A DPPA4 Missense_Mutation p.A204S 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-G4-6588-01 3 109049559 109049559 T C DPPA4 Missense_Mutation p.H164R 0.31 tolerated(0.68) benign(0.023) TCGA-G4-6588-01 3 10953837 10953837 C T SLC6A11 Silent p.T318T 0.31 TCGA-G4-6588-01 3 111263902 111263902 A - CD96 Frame_Shift_Del p.T26Qfs*18 0.29 TCGA-G4-6588-01 3 111764652 111764652 C T TMPRSS7 Missense_Mutation p.R72C 0.38 deleterious(0.02) possibly_damaging(0.54) TCGA-G4-6588-01 3 112999884 112999884 A C BOC Missense_Mutation p.K772T 0.33 deleterious(0) benign(0.319) TCGA-G4-6588-01 3 113955306 113955306 G A ZNF80 Nonsense_Mutation p.R206* 0.32 TCGA-G4-6588-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.31 TCGA-G4-6588-01 3 114070037 114070037 C T ZBTB20 Silent p.Q296Q 0.41 TCGA-G4-6588-01 3 119176962 119176962 A - TMEM39A Frame_Shift_Del p.F80Sfs*33 0.25 TCGA-G4-6588-01 3 119379055 119379055 G T POPDC2 Silent p.A72A 0.37 TCGA-G4-6588-01 3 120347323 120347323 C A HGD Missense_Mutation p.K414N 0.36 tolerated(0.26) benign(0.004) TCGA-G4-6588-01 3 121341633 121341633 G T FBXO40 Missense_Mutation p.G453W 0.47 deleterious(0.03) possibly_damaging(0.649) TCGA-G4-6588-01 3 121351296 121351296 C T HCLS1 Missense_Mutation p.E375K 0.39 tolerated(0.12) benign(0.292) TCGA-G4-6588-01 3 121414667 121414667 T A GOLGB1 Missense_Mutation p.Q1568L 0.36 probably_damaging(0.987) TCGA-G4-6588-01 3 121641625 121641625 G A SLC15A2 Missense_Mutation p.A262T 0.28 deleterious(0) probably_damaging(0.995) TCGA-G4-6588-01 3 121774218 121774218 C T CD86 5'Flank 0.39 TCGA-G4-6588-01 3 122003604 122003604 C T CASR Missense_Mutation p.P945S 0.31 deleterious_low_confidence(0.03) benign(0.056) TCGA-G4-6588-01 3 122437598 122437598 T C PARP14 Missense_Mutation p.F1534L 0.08 tolerated(0.78) benign(0.168) TCGA-G4-6588-01 3 123047503 123047503 C T ADCY5 Missense_Mutation p.G598D 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 3 123452622 123452622 G A MYLK Silent p.G407G 0.24 TCGA-G4-6588-01 3 125007009 125007010 - T ZNF148 Frame_Shift_Ins p.Q133Tfs*27 0.25 TCGA-G4-6588-01 3 125249346 125249346 T C OSBPL11 3'UTR 0.34 TCGA-G4-6588-01 3 126733335 126733335 G A PLXNA1 Silent p.T873T 0.30 TCGA-G4-6588-01 3 127337882 127337882 G T MCM2 Missense_Mutation p.A676S 0.37 deleterious(0.01) probably_damaging(1) TCGA-G4-6588-01 3 127771392 127771392 C A SEC61A1 5'UTR 0.33 TCGA-G4-6588-01 3 128990702 128990702 T C COPG1 Missense_Mutation p.Y646H 0.32 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 3 129324775 129324775 G A PLXND1 Silent p.P236P 0.25 TCGA-G4-6588-01 3 129389212 129389212 T C TMCC1 Missense_Mutation p.Y491C 0.24 deleterious(0.02) benign(0.223) TCGA-G4-6588-01 3 130159447 130159447 G T COL6A5 Nonsense_Mutation p.E2089* 0.26 TCGA-G4-6588-01 3 130732840 130732840 T C ASTE1 3'UTR 0.40 TCGA-G4-6588-01 3 132219741 132219741 T A DNAJC13 Missense_Mutation p.V1507E 0.31 deleterious(0) benign(0.025) TCGA-G4-6588-01 3 132320649 132320649 A G ACKR4 3'UTR 0.19 TCGA-G4-6588-01 3 132320981 132320982 - T ACKR4 3'UTR 0.21 TCGA-G4-6588-01 3 132322085 132322086 - T ACAD11 Frame_Shift_Ins p.W537Mfs*57 0.22 TCGA-G4-6588-01 3 133494362 133494362 G A TF Silent p.E591E 0.27 TCGA-G4-6588-01 3 133557017 133557017 A G RAB6B Missense_Mutation p.V163A 0.28 deleterious(0) possibly_damaging(0.843) TCGA-G4-6588-01 3 133698430 133698430 G A SLCO2A1 Silent p.L43L 0.33 TCGA-G4-6588-01 3 136573399 136573399 C T SLC35G2 Missense_Mutation p.P33S 0.23 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 3 137484388 137484388 C T SOX14 3'UTR 0.31 TCGA-G4-6588-01 3 137964046 137964046 T C ARMC8 Intron 0.23 TCGA-G4-6588-01 3 140285157 140285157 C A CLSTN2 3'UTR 0.32 TCGA-G4-6588-01 3 141497592 141497592 G T GRK7 Missense_Mutation p.A156S 0.28 tolerated(0.49) benign(0.023) TCGA-G4-6588-01 3 14211972 14211972 C T XPC Silent p.E126E 0.26 TCGA-G4-6588-01 3 142241651 142241651 T C ATR Silent p.G1395G 0.32 TCGA-G4-6588-01 3 14509711 14509711 G T SLC6A6 Missense_Mutation p.A363S 0.36 deleterious(0.01) possibly_damaging(0.88) TCGA-G4-6588-01 3 145878769 145878769 C - PLOD2 Frame_Shift_Del p.G3Dfs*4 0.39 TCGA-G4-6588-01 3 148460508 148460508 A G AGTR1 3'UTR 0.28 TCGA-G4-6588-01 3 148890142 148890142 C T HPS3 3'UTR 0.31 TCGA-G4-6588-01 3 148891264 148891264 A G CP 3'UTR 0.31 TCGA-G4-6588-01 3 15084597 15084597 T C NR2C2 3'UTR 0.49 TCGA-G4-6588-01 3 151451811 151451811 A - AADACL2 5'UTR 0.29 TCGA-G4-6588-01 3 155241749 155241749 C T PLCH1 Silent p.G457G 0.32 TCGA-G4-6588-01 3 155632243 155632243 A G GMPS Missense_Mutation p.T308A 0.22 deleterious(0.01) possibly_damaging(0.872) TCGA-G4-6588-01 3 156254533 156254533 A G KCNAB1 Silent p.S419S 0.47 TCGA-G4-6588-01 3 160037567 160037567 G A IFT80 Missense_Mutation p.T313M 0.19 deleterious(0.05) possibly_damaging(0.835) TCGA-G4-6588-01 3 167000071 167000071 A G ZBBX Silent p.L737L 0.29 TCGA-G4-6588-01 3 168833604 168833605 - T MECOM Frame_Shift_Ins p.V563Sfs*27 0.28 TCGA-G4-6588-01 3 169381319 169381319 C T MECOM 5'Flank 0.57 TCGA-G4-6588-01 3 169802469 169802469 A - GPR160 Frame_Shift_Del p.I239Yfs*22 0.22 TCGA-G4-6588-01 3 17053454 17053454 T C PLCL2 Silent p.A746A 0.10 TCGA-G4-6588-01 3 170929031 170929031 C A TNIK Splice_Site p.X61_splice 0.12 TCGA-G4-6588-01 3 172166072 172166072 C T GHSR Silent p.A44A 0.38 TCGA-G4-6588-01 3 178742975 178742975 G A ZMAT3 Missense_Mutation p.R234C 0.30 deleterious(0) probably_damaging(0.989) TCGA-G4-6588-01 3 178748703 178748703 G A ZMAT3 Missense_Mutation p.P119S 0.27 tolerated(0.47) benign(0.003) TCGA-G4-6588-01 3 179576913 179576913 G A PEX5L Silent p.S253S 0.31 TCGA-G4-6588-01 3 180332568 180332568 T - CCDC39 3'UTR 0.45 TCGA-G4-6588-01 3 180364913 180364913 T C CCDC39 Missense_Mutation p.K494R 0.29 tolerated(0.19) benign(0.026) TCGA-G4-6588-01 3 182635926 182635926 C A ATP11B 3'UTR 0.33 TCGA-G4-6588-01 3 182941216 182941216 C T MCF2L2 Missense_Mutation p.R740H 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-G4-6588-01 3 182994679 182994679 C T MCF2L2 Missense_Mutation p.G615R 0.32 tolerated(0.36) benign(0.002) TCGA-G4-6588-01 3 183660588 183660588 A G ABCC5 Silent p.P1207P 0.34 TCGA-G4-6588-01 3 183703232 183703232 G A ABCC5 Intron 0.35 TCGA-G4-6588-01 3 183852992 183852992 G C EIF2B5 5'Flank 0.44 TCGA-G4-6588-01 3 183951090 183951090 C T VWA5B2 Silent p.D145D 0.33 TCGA-G4-6588-01 3 183959116 183959116 G A VWA5B2 Missense_Mutation p.R1035H 0.35 tolerated(0.08) benign(0.006) TCGA-G4-6588-01 3 184038482 184038482 G A EIF4G1 Missense_Mutation p.R208H 0.09 deleterious(0) benign(0.001) TCGA-G4-6588-01 3 184290884 184290884 A G EPHB3 Missense_Mutation p.D259G 0.30 deleterious(0) probably_damaging(0.945) TCGA-G4-6588-01 3 184298228 184298228 C T EPHB3 Silent p.G737G 0.34 TCGA-G4-6588-01 3 185245344 185245344 C A LIPH Missense_Mutation p.G186W 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 3 185410561 185410561 G A IGF2BP2 Intron 0.38 TCGA-G4-6588-01 3 186953596 186953596 C - MASP1 Frame_Shift_Del p.G688Dfs*53 0.19 TCGA-G4-6588-01 3 190147396 190147396 T C TMEM207 Silent p.V143V 0.28 TCGA-G4-6588-01 3 194080243 194080243 G A LRRC15 Silent p.S516S 0.30 TCGA-G4-6588-01 3 194118986 194118986 G A GP5 Missense_Mutation p.A9V 0.21 tolerated(0.19) benign(0.016) TCGA-G4-6588-01 3 195512718 195512718 G A MUC4 Silent p.S1911S 0.16 TCGA-G4-6588-01 3 195711053 195711053 C T SDHAP1 RNA 0.13 TCGA-G4-6588-01 3 195712502 195712502 G A SDHAP1 RNA 0.16 TCGA-G4-6588-01 3 195966473 195966473 T - PCYT1A Frame_Shift_Del p.K281Sfs*19 0.25 TCGA-G4-6588-01 3 196199468 196199468 T C RNF168 Missense_Mutation p.N313S 0.21 tolerated(0.15) benign(0.021) TCGA-G4-6588-01 3 196388042 196388042 G A NRROS Missense_Mutation p.A510T 0.29 tolerated(0.2) benign(0.091) TCGA-G4-6588-01 3 196742359 196742359 C T MFI2 Silent p.V370V 0.32 TCGA-G4-6588-01 3 197410264 197410264 C T KIAA0226 Missense_Mutation p.G632R 0.27 deleterious(0) probably_damaging(0.986) TCGA-G4-6588-01 3 20167408 20167408 G A KAT2B Silent p.L475L 0.34 TCGA-G4-6588-01 3 25470179 25470179 C A RARB 5'UTR 0.30 TCGA-G4-6588-01 3 25636097 25636097 C T RARB Nonsense_Mutation p.R360* 0.35 TCGA-G4-6588-01 3 25636113 25636113 A G RARB Missense_Mutation p.H365R 0.23 deleterious(0.01) benign(0.199) TCGA-G4-6588-01 3 26751758 26751758 A - LRRC3B Frame_Shift_Del p.T201Lfs*17 0.24 TCGA-G4-6588-01 3 27758698 27758698 G A EOMES Nonsense_Mutation p.R642* 0.33 TCGA-G4-6588-01 3 27763338 27763338 C G EOMES Missense_Mutation p.G150R 0.27 tolerated(0.14) benign(0.407) TCGA-G4-6588-01 3 30732970 30732970 G A TGFBR2 Missense_Mutation p.R553H 0.37 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 3 31661279 31661279 C T STT3B Silent p.G428G 0.27 TCGA-G4-6588-01 3 32582554 32582554 A T DYNC1LI1 Missense_Mutation p.I238N 0.30 deleterious(0) probably_damaging(0.958) TCGA-G4-6588-01 3 32927475 32927475 C T TRIM71 Missense_Mutation p.A357V 0.20 tolerated(0.28) benign(0.172) TCGA-G4-6588-01 3 367694 367695 - A CHL1 Frame_Shift_Ins p.F49Ifs*3 0.26 TCGA-G4-6588-01 3 37034997 37034997 C T MLH1 5'UTR 0.33 TCGA-G4-6588-01 3 37114286 37114286 T - LRRFIP2 Frame_Shift_Del p.I487Lfs*4 0.32 TCGA-G4-6588-01 3 38081083 38081083 A G DLEC1 Missense_Mutation p.S123G 0.28 tolerated(1) benign(0.002) TCGA-G4-6588-01 3 38315853 38315853 C - SLC22A13 Frame_Shift_Del p.L158Sfs*56 0.12 TCGA-G4-6588-01 3 38522901 38522901 T A ACVR2B Missense_Mutation p.F340Y 0.10 deleterious(0) probably_damaging(0.99) TCGA-G4-6588-01 3 38770076 38770076 C T SCN10A Missense_Mutation p.C866Y 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 3 39142591 39142591 A C GORASP1 Missense_Mutation p.D117E 0.47 tolerated(0.29) benign(0.12) TCGA-G4-6588-01 3 42299701 42299701 G A CCK Silent p.I79I 0.31 TCGA-G4-6588-01 3 42727915 42727915 C T KLHL40 Missense_Mutation p.R269W 0.30 deleterious(0.01) possibly_damaging(0.757) TCGA-G4-6588-01 3 43074769 43074769 G - FAM198A Frame_Shift_Del p.L340Cfs*39 0.31 TCGA-G4-6588-01 3 44541219 44541219 A G ZNF852 Silent p.T350T 0.26 TCGA-G4-6588-01 3 44636243 44636243 A - ZNF660 Frame_Shift_Del p.V189Ffs*41 0.24 TCGA-G4-6588-01 3 44970813 44970813 G T ZDHHC3 Silent p.I270I 0.23 TCGA-G4-6588-01 3 46875237 46875237 A G PRSS42 Intron 0.26 TCGA-G4-6588-01 3 47048573 47048573 A G NBEAL2 Silent p.V2384V 0.35 TCGA-G4-6588-01 3 47452997 47452997 C T PTPN23 Missense_Mutation p.R1237C 0.30 possibly_damaging(0.466) TCGA-G4-6588-01 3 47887891 47887891 C T DHX30 Silent p.I443I 0.39 TCGA-G4-6588-01 3 47950780 47950780 T C MAP4 Intron 0.19 TCGA-G4-6588-01 3 48415092 48415093 CA - FBXW12 Frame_Shift_Del p.T64Mfs*22 0.26 TCGA-G4-6588-01 3 48474408 48474408 C T CCDC51 Missense_Mutation p.V216M 0.35 deleterious(0) possibly_damaging(0.88) TCGA-G4-6588-01 3 48618734 48618734 G A COL7A1 Missense_Mutation p.R1620W 0.36 unknown(0) TCGA-G4-6588-01 3 48631073 48631073 C T COL7A1 Missense_Mutation p.R108H 0.27 unknown(0) TCGA-G4-6588-01 3 49212328 49212328 A C KLHDC8B Missense_Mutation p.Q232P 0.23 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 3 49314031 49314031 G A C3orf62 Missense_Mutation p.A92V 0.32 tolerated(0.35) benign(0.027) TCGA-G4-6588-01 3 49323569 49323569 T A USP4 Missense_Mutation p.N721I 0.31 tolerated(0.08) possibly_damaging(0.821) TCGA-G4-6588-01 3 49463828 49463828 C A NICN1 Missense_Mutation p.A56S 0.14 deleterious(0.01) possibly_damaging(0.904) TCGA-G4-6588-01 3 49950702 49950702 C T MON1A Missense_Mutation p.M123I 0.26 tolerated(0.2) benign(0.002) TCGA-G4-6588-01 3 50289956 50289956 G A GNAI2 Missense_Mutation p.D97N 0.41 tolerated(0.53) benign(0) TCGA-G4-6588-01 3 50369009 50369009 G A RASSF1 Silent p.R251R 0.33 TCGA-G4-6588-01 3 50375427 50375427 C T RASSF1 Missense_Mutation p.C93Y 0.28 deleterious(0) possibly_damaging(0.892) TCGA-G4-6588-01 3 50392871 50392871 C T TMEM115 Missense_Mutation p.S320N 0.12 tolerated(0.05) benign(0.04) TCGA-G4-6588-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.28 TCGA-G4-6588-01 3 51743304 51743304 C T GRM2 Missense_Mutation p.A102V 0.26 deleterious(0) possibly_damaging(0.689) TCGA-G4-6588-01 3 51982479 51982479 C T PARP3 Silent p.L536L 0.29 TCGA-G4-6588-01 3 52185085 52185085 C T POC1A Missense_Mutation p.G17D 0.28 deleterious(0.05) probably_damaging(0.999) TCGA-G4-6588-01 3 52246289 52246289 A - ALAS1 Frame_Shift_Del p.N540Tfs*8 0.13 TCGA-G4-6588-01 3 52283817 52283817 G A PPM1M Missense_Mutation p.S244N 0.20 tolerated(0.06) benign(0.001) TCGA-G4-6588-01 3 52415764 52415764 C T DNAH1 Missense_Mutation p.R2573C 0.31 probably_damaging(1) TCGA-G4-6588-01 3 52522555 52522555 C - NISCH Frame_Shift_Del p.T1019Rfs*140 0.18 TCGA-G4-6588-01 3 53156577 53156577 A G RFT1 Missense_Mutation p.V90A 0.20 deleterious(0.01) possibly_damaging(0.472) TCGA-G4-6588-01 3 53275149 53275149 G A TKT Missense_Mutation p.P113L 0.45 deleterious(0) probably_damaging(0.994) TCGA-G4-6588-01 3 53707123 53707123 T C CACNA1D Intron 0.31 TCGA-G4-6588-01 3 53891710 53891710 C T IL17RB Missense_Mutation p.T247M 0.18 tolerated(0.28) benign(0.003) TCGA-G4-6588-01 3 54871203 54871203 C - CACNA2D3 Frame_Shift_Del p.V474Sfs*2 0.30 TCGA-G4-6588-01 3 56601052 56601053 - A CCDC66 Frame_Shift_Ins p.A265Sfs*9 0.11 TCGA-G4-6588-01 3 56716900 56716902 GCC - FAM208A In_Frame_Del p.G45del 0.34 TCGA-G4-6588-01 3 58089788 58089788 G - FLNB Frame_Shift_Del p.G531Dfs*42 0.15 TCGA-G4-6588-01 3 58109121 58109121 T G FLNB Missense_Mutation p.L1143R 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 3 58368344 58368344 T C PXK Missense_Mutation p.V102A 0.18 tolerated(0.64) benign(0.002) TCGA-G4-6588-01 3 58510206 58510206 G T ACOX2 Silent p.A491A 0.32 TCGA-G4-6588-01 3 62357333 62357333 C T FEZF2 Missense_Mutation p.A288T 0.23 deleterious(0.02) benign(0.042) TCGA-G4-6588-01 3 62648015 62648015 G A CADPS Silent p.L315L 0.27 TCGA-G4-6588-01 3 63981832 63981832 C - ATXN7 Frame_Shift_Del p.T781Pfs*11 0.25 TCGA-G4-6588-01 3 64527266 64527266 T C ADAMTS9 Missense_Mutation p.K1743R 0.35 tolerated(0.25) benign(0.032) TCGA-G4-6588-01 3 69026673 69026673 G A EOGT 3'UTR 0.24 TCGA-G4-6588-01 3 69097150 69097150 C A TMF1 Missense_Mutation p.D236Y 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-G4-6588-01 3 72897486 72897486 C G SHQ1 Silent p.L2L 0.27 TCGA-G4-6588-01 3 73112365 73112365 C T EBLN2 3'UTR 0.35 TCGA-G4-6588-01 3 74316519 74316519 C T CNTN3 Silent p.Q905Q 0.21 TCGA-G4-6588-01 3 74334559 74334559 C A CNTN3 Silent p.R867R 0.26 TCGA-G4-6588-01 3 85851295 85851295 C A CADM2 Missense_Mutation p.L56I 0.38 tolerated(0.17) probably_damaging(1) TCGA-G4-6588-01 3 85851325 85851325 C A CADM2 Missense_Mutation p.L66M 0.31 deleterious(0) probably_damaging(0.988) TCGA-G4-6588-01 3 8607287 8607287 G A LMCD1 Missense_Mutation p.R298H 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 3 88205327 88205327 C T C3orf38 Missense_Mutation p.L178F 0.32 deleterious(0.03) benign(0.165) TCGA-G4-6588-01 3 97194270 97194270 G A EPHA6 Missense_Mutation p.V657I 0.22 tolerated(0.25) benign(0.036) TCGA-G4-6588-01 3 98001848 98001848 C A OR5H2 Silent p.I39I 0.28 TCGA-G4-6588-01 3 98541124 98541124 T C DCBLD2 Missense_Mutation p.K260E 0.11 deleterious(0.01) possibly_damaging(0.6) TCGA-G4-6588-01 3 9876988 9876988 C T TTLL3 Missense_Mutation p.R855C 0.28 deleterious_low_confidence(0.04) benign(0.001) TCGA-G4-6588-01 4 100534123 100534123 G - MTTP Frame_Shift_Del p.E683Rfs*31 0.30 TCGA-G4-6588-01 4 101109025 101109025 C T DDIT4L Missense_Mutation p.V131I 0.31 tolerated(0.12) possibly_damaging(0.645) TCGA-G4-6588-01 4 106766662 106766662 C T GSTCD Silent p.S610S 0.27 TCGA-G4-6588-01 4 107845202 107845202 C T DKK2 Missense_Mutation p.R230H 0.29 deleterious(0) probably_damaging(0.987) TCGA-G4-6588-01 4 110880562 110880562 C T EGF Silent p.Y345Y 0.23 TCGA-G4-6588-01 4 113199405 113199405 A G TIFA Silent p.C56C 0.32 TCGA-G4-6588-01 4 113351828 113351828 C T ALPK1 Silent p.V375V 0.23 TCGA-G4-6588-01 4 113461126 113461127 - T C4orf21 Frame_Shift_Ins p.R2022Kfs*8 0.24 TCGA-G4-6588-01 4 114251533 114251533 G A ANK2 Missense_Mutation p.R1011H 0.24 probably_damaging(1) TCGA-G4-6588-01 4 119948360 119948360 C T SYNPO2 Missense_Mutation p.A279V 0.30 tolerated(0.3) benign(0.005) TCGA-G4-6588-01 4 119958460 119958460 T - SYNPO2 Intron 0.33 TCGA-G4-6588-01 4 120219740 120219740 C T C4orf3 3'UTR 0.17 TCGA-G4-6588-01 4 122853623 122853623 C T TRPC3 Missense_Mutation p.D264N 0.29 tolerated(0.15) benign(0.233) TCGA-G4-6588-01 4 123131033 123131033 G A KIAA1109 Nonsense_Mutation p.W664* 0.29 TCGA-G4-6588-01 4 123260555 123260555 G A KIAA1109 Missense_Mutation p.G4115E 0.30 benign(0.086) TCGA-G4-6588-01 4 124235174 124235174 T - SPATA5 Frame_Shift_Del p.Y881Mfs*37 0.27 TCGA-G4-6588-01 4 126237919 126237919 C A FAT4 Missense_Mutation p.P118H 0.17 probably_damaging(0.999) TCGA-G4-6588-01 4 126238484 126238484 G A FAT4 Silent p.T306T 0.37 TCGA-G4-6588-01 4 129924921 129924921 T C SCLT1 Missense_Mutation p.Q134R 0.20 tolerated(0.11) benign(0.057) TCGA-G4-6588-01 4 140641157 140641157 T C MAML3 Missense_Mutation p.S913G 0.37 benign(0.005) TCGA-G4-6588-01 4 142155161 142155161 C T ZNF330 3'UTR 0.26 TCGA-G4-6588-01 4 144922397 144922397 G A GYPB Missense_Mutation p.A26V 0.12 tolerated(0.14) benign(0.184) TCGA-G4-6588-01 4 145041702 145041702 G A GYPA Missense_Mutation p.A26V 0.47 tolerated(0.95) benign(0.023) TCGA-G4-6588-01 4 146041199 146041199 T C ABCE1 Silent p.C346C 0.31 TCGA-G4-6588-01 4 148887925 148887925 G A ARHGAP10 Missense_Mutation p.A551T 0.10 deleterious(0) probably_damaging(0.977) TCGA-G4-6588-01 4 149357283 149357283 G A NR3C2 Nonsense_Mutation p.R244* 0.32 TCGA-G4-6588-01 4 151186699 151186699 T C LRBA 3'UTR 0.24 TCGA-G4-6588-01 4 153809398 153809398 A - ARFIP1 Frame_Shift_Del p.K303Nfs*13 0.21 TCGA-G4-6588-01 4 154626369 154626369 G A TLR2 Silent p.Q770Q 0.26 TCGA-G4-6588-01 4 155225918 155225918 A G DCHS2 Silent p.I1381I 0.09 TCGA-G4-6588-01 4 156618064 156618064 T C GUCY1A3 Silent p.C15C 0.24 TCGA-G4-6588-01 4 15689322 15689322 T A FAM200B Missense_Mutation p.L241H 0.33 deleterious(0) possibly_damaging(0.863) TCGA-G4-6588-01 4 159091773 159091773 C - FAM198B Frame_Shift_Del p.G252Afs*23 0.31 TCGA-G4-6588-01 4 159493929 159493929 G A RXFP1 Silent p.Q43Q 0.08 TCGA-G4-6588-01 4 160253755 160253755 A - RAPGEF2 Frame_Shift_Del p.S522Vfs*12 0.14 TCGA-G4-6588-01 4 167833791 167833791 C A SPOCK3 Missense_Mutation p.G155C 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 4 169354247 169354247 C T DDX60L Missense_Mutation p.M438I 0.20 tolerated(1) benign(0.002) TCGA-G4-6588-01 4 175158629 175158630 - T FBXO8 Frame_Shift_Ins p.N298Kfs*3 0.21 TCGA-G4-6588-01 4 177109323 177109323 G T SPATA4 Missense_Mutation p.S251Y 0.33 tolerated(1) benign(0.002) TCGA-G4-6588-01 4 184175123 184175123 G T WWC2 Missense_Mutation p.R389S 0.29 deleterious(0) benign(0.219) TCGA-G4-6588-01 4 185593372 185593372 G A PRIMPOL Missense_Mutation p.G201D 0.28 benign(0.004) TCGA-G4-6588-01 4 185687077 185687077 G A ACSL1 Silent p.L443L 0.41 TCGA-G4-6588-01 4 185709861 185709861 C T ACSL1 Missense_Mutation p.A74T 0.28 tolerated(0.34) benign(0.003) TCGA-G4-6588-01 4 186577772 186577773 - A SORBS2 Intron 0.24 TCGA-G4-6588-01 4 186605971 186605971 C T SORBS2 Missense_Mutation p.A14T 0.36 tolerated_low_confidence(0.14) benign(0.435) TCGA-G4-6588-01 4 187122490 187122490 G C CYP4V2 Missense_Mutation p.M327I 0.23 deleterious(0) probably_damaging(0.991) TCGA-G4-6588-01 4 187130278 187130278 C T CYP4V2 Silent p.A419A 0.26 TCGA-G4-6588-01 4 187153344 187153344 C - KLKB1 Frame_Shift_Del p.P42Qfs*8 0.30 TCGA-G4-6588-01 4 187518019 187518019 C T FAT1 Silent p.T4225T 0.36 TCGA-G4-6588-01 4 187525663 187525663 G A FAT1 Silent p.N3472N 0.31 TCGA-G4-6588-01 4 187540533 187540533 C T FAT1 Missense_Mutation p.A2403T 0.11 benign(0.117) TCGA-G4-6588-01 4 187540874 187540874 G A FAT1 Missense_Mutation p.A2289V 0.28 benign(0.005) TCGA-G4-6588-01 4 187541660 187541660 C T FAT1 Missense_Mutation p.R2027H 0.24 benign(0.005) TCGA-G4-6588-01 4 21950317 21950317 C T KCNIP4 5'UTR 0.27 TCGA-G4-6588-01 4 22389330 22389330 A G GPR125 Nonstop_Mutation p.*1322Qext*6 0.32 TCGA-G4-6588-01 4 2355701 2355701 G - ZFYVE28 Frame_Shift_Del p.Q47Sfs*18 0.32 TCGA-G4-6588-01 4 25265389 25265389 T C PI4K2B Silent p.D332D 0.34 TCGA-G4-6588-01 4 2695394 2695394 C - FAM193A Frame_Shift_Del p.L673Sfs*142 0.32 TCGA-G4-6588-01 4 27024236 27024236 T C STIM2 Missense_Mutation p.L628S 0.30 tolerated_low_confidence(0.35) benign(0.197) TCGA-G4-6588-01 4 27024297 27024297 G A STIM2 Silent p.S648S 0.08 TCGA-G4-6588-01 4 2814050 2814050 G A SH3BP2 5'UTR 0.29 TCGA-G4-6588-01 4 2831650 2831650 G A SH3BP2 Silent p.L396L 0.39 TCGA-G4-6588-01 4 2952780 2952780 A - NOP14 Intron 0.16 TCGA-G4-6588-01 4 38829612 38829612 T C TLR6 Missense_Mutation p.S495G 0.30 tolerated(0.11) benign(0.022) TCGA-G4-6588-01 4 40127795 40127796 - A N4BP2 Frame_Shift_Ins p.S1460Ifs*17 0.29 TCGA-G4-6588-01 4 4285458 4285458 A - LYAR Frame_Shift_Del p.F4Lfs*10 0.30 TCGA-G4-6588-01 4 4304240 4304240 A G ZBTB49 Missense_Mutation p.K226R 0.38 tolerated(0.07) benign(0.32) TCGA-G4-6588-01 4 47538925 47538925 G A ATP10D Missense_Mutation p.A456T 0.25 tolerated(0.21) probably_damaging(0.925) TCGA-G4-6588-01 4 47578863 47578863 T - ATP10D Frame_Shift_Del p.L1148* 0.26 TCGA-G4-6588-01 4 48485644 48485644 G A SLC10A4 Silent p.A22A 0.67 TCGA-G4-6588-01 4 55604763 55604763 C A KIT 3'UTR 0.38 TCGA-G4-6588-01 4 57314704 57314704 A G PAICS Missense_Mutation p.I179V 0.33 benign(0.003) TCGA-G4-6588-01 4 5785362 5785362 C - EVC Frame_Shift_Del p.P551Rfs*7 0.28 TCGA-G4-6588-01 4 5841392 5841392 A - CRMP1 Frame_Shift_Del p.F389Lfs*28 0.29 TCGA-G4-6588-01 4 66270109 66270109 G A EPHA5 Silent p.G591G 0.33 TCGA-G4-6588-01 4 68788615 68788615 C T TMPRSS11A Missense_Mutation p.V187I 0.34 tolerated(0.14) benign(0.014) TCGA-G4-6588-01 4 6925801 6925801 T G TBC1D14 Missense_Mutation p.L229V 0.25 tolerated(0.5) benign(0.028) TCGA-G4-6588-01 4 7062663 7062663 C A GRPEL1 Missense_Mutation p.V194F 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 4 71467170 71467170 C - AMBN Frame_Shift_Del p.P111Hfs*6 0.33 TCGA-G4-6588-01 4 71509838 71509838 G A ENAM Missense_Mutation p.A899T 0.29 tolerated(0.07) benign(0.328) TCGA-G4-6588-01 4 72338698 72338698 T A SLC4A4 Intron 0.16 TCGA-G4-6588-01 4 74702709 74702709 G A CXCL6 Silent p.E46E 0.29 TCGA-G4-6588-01 4 75065637 75065637 C T MTHFD2L Missense_Mutation p.A193V 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 4 76846922 76846922 C T NAAA Missense_Mutation p.R211Q 0.37 tolerated(0.74) benign(0.001) TCGA-G4-6588-01 4 77003615 77003615 G - ART3 Frame_Shift_Del p.A238Lfs*10 0.23 TCGA-G4-6588-01 4 7719743 7719743 C T SORCS2 Missense_Mutation p.R753W 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 4 77662378 77662378 C T SHROOM3 Missense_Mutation p.R1018C 0.42 deleterious(0) probably_damaging(0.978) TCGA-G4-6588-01 4 79199878 79199878 T C FRAS1 Missense_Mutation p.Y351H 0.35 benign(0.005) TCGA-G4-6588-01 4 80247164 80247164 C T NAA11 5'UTR 0.46 TCGA-G4-6588-01 4 84370031 84370031 T - HELQ Frame_Shift_Del p.T366Pfs*7 0.14 TCGA-G4-6588-01 4 87671917 87671917 G A PTPN13 Missense_Mutation p.R982Q 0.28 tolerated(0.17) benign(0.064) TCGA-G4-6588-01 4 88732567 88732567 A G IBSP Silent p.E153E 0.19 TCGA-G4-6588-01 4 92520334 92520335 - T CCSER1 3'UTR 0.30 TCGA-G4-6588-01 4 94751102 94751102 C - ATOH1 Frame_Shift_Del p.H344Ifs*18 0.21 TCGA-G4-6588-01 4 95198174 95198174 C A SMARCAD1 Missense_Mutation p.A649E 0.30 deleterious(0) possibly_damaging(0.628) TCGA-G4-6588-01 4 954286 954286 C A DGKQ 3'UTR 0.24 TCGA-G4-6588-01 4 96761472 96761472 G A PDHA2 Silent p.A57A 0.30 TCGA-G4-6588-01 4 973230 973230 C T SLC26A1 Silent p.S213S 0.38 TCGA-G4-6588-01 4 9784458 9784458 G A DRD5 Missense_Mutation p.A269T 0.39 deleterious(0.04) possibly_damaging(0.532) TCGA-G4-6588-01 4 9785349 9785349 G C DRD5 3'UTR 0.30 TCGA-G4-6588-01 4 99982548 99982548 T - METAP1 3'UTR 0.12 TCGA-G4-6588-01 5 102891660 102891660 G A NUDT12 Silent p.G312G 0.20 TCGA-G4-6588-01 5 1034967 1034967 G A NKD2 Missense_Mutation p.V175I 0.33 deleterious(0) probably_damaging(0.988) TCGA-G4-6588-01 5 111066542 111066542 A - NREP 3'UTR 0.39 TCGA-G4-6588-01 5 112878121 112878121 C T YTHDC2 Silent p.C472C 0.23 TCGA-G4-6588-01 5 121188317 121188317 C - FTMT Frame_Shift_Del p.P221Rfs*32 0.33 TCGA-G4-6588-01 5 125807989 125807989 G A GRAMD3 Silent p.L140L 0.36 TCGA-G4-6588-01 5 125960302 125960302 A C PHAX Missense_Mutation p.E317D 0.34 tolerated(0.09) benign(0.011) TCGA-G4-6588-01 5 126141286 126141287 - A LMNB1 Frame_Shift_Ins p.Q183Tfs*5 0.29 TCGA-G4-6588-01 5 128302036 128302036 G A SLC27A6 Missense_Mutation p.R69Q 0.29 tolerated(0.4) benign(0.002) TCGA-G4-6588-01 5 128302137 128302137 A - SLC27A6 Frame_Shift_Del p.K104Rfs*8 0.28 TCGA-G4-6588-01 5 128990099 128990099 A G ADAMTS19 Silent p.L753L 0.17 TCGA-G4-6588-01 5 1293787 1293787 T C TERT Missense_Mutation p.Y405C 0.19 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 5 132087813 132087813 C T SEPT8 Missense_Mutation p.M449I 0.30 tolerated_low_confidence(0.44) benign(0) TCGA-G4-6588-01 5 134870648 134870648 A T NEUROG1 3'UTR 0.29 TCGA-G4-6588-01 5 137802674 137802676 CCT - EGR1 In_Frame_Del p.S181del 0.42 TCGA-G4-6588-01 5 138713794 138713794 A C SLC23A1 Silent p.A445A 0.25 TCGA-G4-6588-01 5 138857856 138857856 C T TMEM173 Missense_Mutation p.R253Q 0.45 tolerated(0.38) benign(0.011) TCGA-G4-6588-01 5 139908734 139908734 G A ANKHD1 Missense_Mutation p.S2068N 0.58 benign(0.018) TCGA-G4-6588-01 5 140027139 140027139 G A NDUFA2 Silent p.V10V 0.17 TCGA-G4-6588-01 5 140167899 140167899 C T PCDHA1 Missense_Mutation p.A675V 0.33 tolerated_low_confidence(0.14) benign(0.031) TCGA-G4-6588-01 5 140203294 140203294 G A PCDHA5 Missense_Mutation p.R645H 0.39 deleterious_low_confidence(0.04) benign(0.152) TCGA-G4-6588-01 5 140214328 140214328 C T PCDHA7 Silent p.D120D 0.11 TCGA-G4-6588-01 5 140222826 140222826 G A PCDHA8 Silent p.A640A 0.31 TCGA-G4-6588-01 5 140228440 140228440 C T PCDHA9 Silent p.D120D 0.18 TCGA-G4-6588-01 5 140237135 140237135 G A PCDHA10 Missense_Mutation p.R501H 0.36 deleterious_low_confidence(0) benign(0.077) TCGA-G4-6588-01 5 140250985 140250985 C T PCDHA11 Missense_Mutation p.T766M 0.29 deleterious_low_confidence(0.03) benign(0.097) TCGA-G4-6588-01 5 140346523 140346523 G A PCDHAC2 Missense_Mutation p.V58M 0.42 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 5 140431523 140431523 C T PCDHB1 Silent p.S156S 0.26 TCGA-G4-6588-01 5 140475969 140475969 G A PCDHB2 Missense_Mutation p.R532H 0.39 tolerated_low_confidence(0.26) benign(0.022) TCGA-G4-6588-01 5 140481787 140481787 G A PCDHB3 Silent p.S518S 0.35 TCGA-G4-6588-01 5 140557763 140557763 G A PCDHB8 Missense_Mutation p.A50T 0.15 tolerated_low_confidence(0.15) benign(0.327) TCGA-G4-6588-01 5 140574984 140574984 A G PCDHB10 3'UTR 0.30 TCGA-G4-6588-01 5 140596462 140596462 T - PCDHB13 3'UTR 0.26 TCGA-G4-6588-01 5 140596738 140596738 T - PCDHB13 3'UTR 0.26 TCGA-G4-6588-01 5 140734772 140734772 C T PCDHGA4 Missense_Mutation p.A2V 0.39 deleterious_low_confidence(0.03) probably_damaging(0.95) TCGA-G4-6588-01 5 140755956 140755956 T - PCDHGA6 Frame_Shift_Del p.F770Sfs*23 0.27 TCGA-G4-6588-01 5 140798318 140798318 A T PCDHGB7 Missense_Mutation p.T298S 0.32 tolerated(0.28) possibly_damaging(0.823) TCGA-G4-6588-01 5 140890727 140890729 AGG - PCDHGB6 In_Frame_Del p.E928del 0.36 TCGA-G4-6588-01 5 14487781 14487781 C - TRIO Frame_Shift_Del p.V2351Cfs*62 0.33 TCGA-G4-6588-01 5 145719648 145719648 G A POU4F3 Missense_Mutation p.V220M 0.28 deleterious(0) probably_damaging(0.969) TCGA-G4-6588-01 5 145890173 145890173 G A TCERG1 Missense_Mutation p.A1089T 0.33 deleterious(0) unknown(0) TCGA-G4-6588-01 5 148407141 148407141 T C SH3TC2 Silent p.T718T 0.33 TCGA-G4-6588-01 5 148689604 148689604 G T AFAP1L1 Missense_Mutation p.R278L 0.31 deleterious(0) possibly_damaging(0.873) TCGA-G4-6588-01 5 149264056 149264056 G A PDE6A Silent p.L671L 0.25 TCGA-G4-6588-01 5 149435631 149435631 C T CSF1R Missense_Mutation p.V838I 0.30 deleterious(0) possibly_damaging(0.562) TCGA-G4-6588-01 5 149998229 149998229 C T SYNPO Silent p.H100H 0.33 TCGA-G4-6588-01 5 151166156 151166156 C - G3BP1 Intron 0.24 TCGA-G4-6588-01 5 152870346 152870346 G T GRIA1 5'Flank 0.30 TCGA-G4-6588-01 5 153407791 153407791 T - FAM114A2 Frame_Shift_Del p.K183Rfs*5 0.30 TCGA-G4-6588-01 5 153433858 153433858 C T MFAP3 3'UTR 0.27 TCGA-G4-6588-01 5 153435158 153435158 T - MFAP3 3'UTR 0.20 TCGA-G4-6588-01 5 153436892 153436892 T C MFAP3 3'UTR 0.33 TCGA-G4-6588-01 5 15500737 15500737 G A FBXL7 5'UTR 0.42 TCGA-G4-6588-01 5 156347508 156347508 A T TIMD4 Missense_Mutation p.L340H 0.21 deleterious(0) benign(0.219) TCGA-G4-6588-01 5 157102180 157102180 G A C5orf52 Missense_Mutation p.R98H 0.29 tolerated(0.09) probably_damaging(0.923) TCGA-G4-6588-01 5 157236720 157236720 A G CLINT1 Missense_Mutation p.L204P 0.28 deleterious(0.04) benign(0.008) TCGA-G4-6588-01 5 159831507 159831507 C A SLU7 Missense_Mutation p.K507N 0.21 tolerated(0.43) benign(0.115) TCGA-G4-6588-01 5 161117268 161117268 A G GABRA6 Missense_Mutation p.I245M 0.23 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 5 161117354 161117354 T - GABRA6 Frame_Shift_Del p.F275Lfs*7 0.25 TCGA-G4-6588-01 5 161309665 161309665 C A GABRA1 Missense_Mutation p.L221I 0.25 tolerated(1) benign(0.058) TCGA-G4-6588-01 5 167655049 167655049 A G TENM2 Missense_Mutation p.M1812V 0.37 tolerated(0.22) benign(0.041) TCGA-G4-6588-01 5 168271589 168271589 A G SLIT3 Missense_Mutation p.L186P 0.37 deleterious(0) probably_damaging(0.953) TCGA-G4-6588-01 5 170341237 170341237 C T RANBP17 Missense_Mutation p.S276F 0.32 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 5 171766905 171766905 A G SH3PXD2B Silent p.L402L 0.29 TCGA-G4-6588-01 5 174156219 174156219 G A MSX2 Missense_Mutation p.R146H 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 5 175793482 175793482 C T ARL10 Missense_Mutation p.R95C 0.31 tolerated(0.06) probably_damaging(0.992) TCGA-G4-6588-01 5 175811366 175811366 G T NOP16 Intron 0.08 TCGA-G4-6588-01 5 176304209 176304209 C - UNC5A Frame_Shift_Del p.P467Qfs*22 0.35 TCGA-G4-6588-01 5 176332331 176332331 A G UIMC1 Silent p.G704G 0.19 TCGA-G4-6588-01 5 176402460 176402460 A G UIMC1 Silent p.L57L 0.32 TCGA-G4-6588-01 5 177034375 177034375 C T B4GALT7 Silent p.H162H 0.29 TCGA-G4-6588-01 5 177171896 177171896 G A FAM153A Missense_Mutation p.A34V 0.13 tolerated_low_confidence(0.09) possibly_damaging(0.695) TCGA-G4-6588-01 5 177636435 177636435 T A HNRNPAB Silent p.G258G 0.31 TCGA-G4-6588-01 5 178506328 178506328 C T ZNF354C Missense_Mutation p.P299S 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 5 178579143 178579143 C A ADAMTS2 Missense_Mutation p.K543N 0.35 deleterious(0) possibly_damaging(0.792) TCGA-G4-6588-01 5 179155825 179155825 G A CANX 3'UTR 0.29 TCGA-G4-6588-01 5 179263603 179263603 C T SQSTM1 3'UTR 0.44 TCGA-G4-6588-01 5 179267872 179267874 CTT - C5orf45 In_Frame_Del p.K179del 0.32 TCGA-G4-6588-01 5 179320402 179320402 C T TBC1D9B Missense_Mutation p.E215K 0.16 deleterious(0.01) possibly_damaging(0.734) TCGA-G4-6588-01 5 180056728 180056728 C T FLT4 Missense_Mutation p.V262I 0.31 tolerated(0.63) possibly_damaging(0.458) TCGA-G4-6588-01 5 180420043 180420043 G - BTNL3 Frame_Shift_Del p.R96Vfs*4 0.43 TCGA-G4-6588-01 5 180684403 180684403 T C TRIM52 3'UTR 0.26 TCGA-G4-6588-01 5 21765097 21765097 T G CDH12 Missense_Mutation p.K502T 0.15 deleterious(0.04) benign(0.246) TCGA-G4-6588-01 5 2749150 2749150 C A IRX2 Silent p.V224V 0.43 TCGA-G4-6588-01 5 32126695 32126695 G A GOLPH3 Missense_Mutation p.R174W 0.17 deleterious(0.02) benign(0.393) TCGA-G4-6588-01 5 33947380 33947380 G A SLC45A2 Missense_Mutation p.P419L 0.28 deleterious(0) probably_damaging(0.988) TCGA-G4-6588-01 5 34811138 34811138 C T RAI14 Missense_Mutation p.L161F 0.25 deleterious(0.01) probably_damaging(0.945) TCGA-G4-6588-01 5 34867036 34867036 A G TTC23L Silent p.A234A 0.28 TCGA-G4-6588-01 5 34950586 34950587 AC - DNAJC21 Intron 0.36 TCGA-G4-6588-01 5 35774026 35774026 T C SPEF2 Silent p.P1327P 0.32 TCGA-G4-6588-01 5 36227638 36227638 T A NADK2 Silent p.G110G 0.32 TCGA-G4-6588-01 5 36976464 36976464 T C NIPBL Silent p.A485A 0.28 TCGA-G4-6588-01 5 38502741 38502741 G T LIFR Missense_Mutation p.A533D 0.28 deleterious(0) possibly_damaging(0.788) TCGA-G4-6588-01 5 40841500 40841500 A G CARD6 Missense_Mutation p.T6A 0.19 tolerated(0.68) benign(0) TCGA-G4-6588-01 5 40931168 40931168 C T C7 Missense_Mutation p.A22V 0.33 tolerated(0.18) benign(0.031) TCGA-G4-6588-01 5 42807196 42807196 C T SEPP1 Missense_Mutation p.R73Q 0.32 tolerated(0.05) possibly_damaging(0.493) TCGA-G4-6588-01 5 43123334 43123334 G A ZNF131 Missense_Mutation p.A50T 0.08 deleterious(0) benign(0.355) TCGA-G4-6588-01 5 43280399 43280399 C T NIM1K Silent p.H293H 0.25 TCGA-G4-6588-01 5 52177801 52177801 G A ITGA1 Missense_Mutation p.V241I 0.35 tolerated(0.39) benign(0) TCGA-G4-6588-01 5 52386534 52386534 T C ITGA2 3'UTR 0.28 TCGA-G4-6588-01 5 52394371 52394371 A G MOCS2 3'UTR 0.22 TCGA-G4-6588-01 5 5239886 5239886 G A ADAMTS16 Missense_Mutation p.A791T 0.36 tolerated(0.58) benign(0.023) TCGA-G4-6588-01 5 5306728 5306728 A G ADAMTS16 Missense_Mutation p.K1100E 0.26 deleterious(0.03) benign(0.292) TCGA-G4-6588-01 5 53606277 53606277 C T ARL15 Silent p.L11L 0.25 TCGA-G4-6588-01 5 53816615 53816615 T G SNX18 3'UTR 0.10 TCGA-G4-6588-01 5 54329601 54329602 - G GZMK Frame_Shift_Ins p.I219Dfs*3 0.29 TCGA-G4-6588-01 5 54593119 54593119 T - DHX29 Frame_Shift_Del p.K123Nfs*23 0.28 TCGA-G4-6588-01 5 55204273 55204273 C A IL31RA Intron 0.21 TCGA-G4-6588-01 5 55407307 55407307 G A ANKRD55 Missense_Mutation p.P423L 0.31 tolerated_low_confidence(0.14) benign(0.003) TCGA-G4-6588-01 5 55422825 55422825 C T ANKRD55 Missense_Mutation p.A241T 0.09 tolerated(0.07) benign(0.309) TCGA-G4-6588-01 5 56545312 56545312 G A GPBP1 Missense_Mutation p.R301H 0.26 deleterious(0.04) benign(0.102) TCGA-G4-6588-01 5 60053405 60053405 T A ELOVL7 Silent p.G189G 0.25 TCGA-G4-6588-01 5 639246 639246 G A CEP72 Missense_Mutation p.A417T 0.19 tolerated(0.78) benign(0.001) TCGA-G4-6588-01 5 64466558 64466558 G A ADAMTS6 Nonsense_Mutation p.Q1044* 0.30 TCGA-G4-6588-01 5 647950 647950 G A CEP72 Missense_Mutation p.G566D 0.30 tolerated(0.15) benign(0.085) TCGA-G4-6588-01 5 65083967 65083967 A C NLN Missense_Mutation p.K327N 0.42 deleterious(0.01) probably_damaging(0.936) TCGA-G4-6588-01 5 6625725 6625725 C T NSUN2 Silent p.S139S 0.29 TCGA-G4-6588-01 5 71492033 71492033 G A MAP1B Missense_Mutation p.A951T 0.19 probably_damaging(0.989) TCGA-G4-6588-01 5 73205433 73205433 G A ARHGEF28 Missense_Mutation p.R1453H 0.36 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 5 74650510 74650510 T C HMGCR Silent p.Y517Y 0.28 TCGA-G4-6588-01 5 75919139 75919139 G T F2RL2 5'UTR 0.34 TCGA-G4-6588-01 5 77805946 77805946 C T LHFPL2 Missense_Mutation p.A31T 0.27 tolerated(0.08) benign(0.063) TCGA-G4-6588-01 5 7859619 7859619 T C FASTKD3 Missense_Mutation p.R640G 0.32 tolerated(0.05) possibly_damaging(0.593) TCGA-G4-6588-01 5 79029206 79029206 A G CMYA5 Missense_Mutation p.K1540E 0.50 benign(0) TCGA-G4-6588-01 5 80057476 80057476 C T MSH3 Silent p.L625L 0.27 TCGA-G4-6588-01 5 81460266 81460266 G C ATG10 Missense_Mutation p.A89P 0.12 tolerated(0.07) benign(0.221) TCGA-G4-6588-01 5 82406889 82406889 T C XRCC4 Missense_Mutation p.M61T 0.34 deleterious(0) possibly_damaging(0.874) TCGA-G4-6588-01 5 82808251 82808252 - A VCAN Intron 0.26 TCGA-G4-6588-01 5 83680198 83680198 C A EDIL3 5'UTR 0.31 TCGA-G4-6588-01 5 90151650 90151650 A G GPR98 Missense_Mutation p.Y5896C 0.30 probably_damaging(0.98) TCGA-G4-6588-01 5 93798193 93798193 A C KIAA0825 Silent p.P715P 0.12 TCGA-G4-6588-01 5 95297454 95297454 C T ELL2 5'UTR 0.20 TCGA-G4-6588-01 5 96122240 96122240 C T ERAP1 Missense_Mutation p.V565I 0.41 tolerated(1) benign(0.005) TCGA-G4-6588-01 6 100062496 100062496 C T PRDM13 Missense_Mutation p.A662V 0.39 deleterious(0.05) benign(0.154) TCGA-G4-6588-01 6 10419703 10419703 C T TFAP2A 5'Flank 0.30 TCGA-G4-6588-01 6 10556613 10556613 T C GCNT2 Intron 0.39 TCGA-G4-6588-01 6 10557410 10557410 C - GCNT2 Intron 0.43 TCGA-G4-6588-01 6 105606545 105606545 A G POPDC3 Missense_Mutation p.Y226H 0.32 deleterious(0) possibly_damaging(0.789) TCGA-G4-6588-01 6 10587057 10587057 C T GCNT2 Intron 0.33 TCGA-G4-6588-01 6 109757309 109757309 T - PPIL6 Frame_Shift_Del p.R77Gfs*14 0.31 TCGA-G4-6588-01 6 111709251 111709251 T - REV3L Frame_Shift_Del p.K300Nfs*17 0.25 TCGA-G4-6588-01 6 11191423 11191423 G A NEDD9 Missense_Mutation p.P227S 0.41 deleterious(0.04) benign(0.082) TCGA-G4-6588-01 6 114181875 114181875 T - MARCKS 3'UTR 0.32 TCGA-G4-6588-01 6 116817893 116817893 C T TRAPPC3L 3'UTR 0.40 TCGA-G4-6588-01 6 117641137 117641137 A G ROS1 Missense_Mutation p.L1945P 0.28 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 6 117841040 117841040 C T DCBLD1 Silent p.T129T 0.34 TCGA-G4-6588-01 6 117869332 117869332 C A DCBLD1 Intron 0.33 TCGA-G4-6588-01 6 12124122 12124122 G A HIVEP1 Missense_Mutation p.R1365H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 6 121770239 121770239 T - GJA1 3'UTR 0.31 TCGA-G4-6588-01 6 123117003 123117003 T C SMPDL3A Silent p.S98S 0.29 TCGA-G4-6588-01 6 123317802 123317802 G A CLVS2 5'UTR 0.27 TCGA-G4-6588-01 6 126176207 126176207 C T NCOA7 Missense_Mutation p.A31V 0.33 tolerated_low_confidence(0.3) benign(0.003) TCGA-G4-6588-01 6 129785498 129785498 C T LAMA2 Silent p.S2352S 0.32 TCGA-G4-6588-01 6 130031250 130031250 A G ARHGAP18 Missense_Mutation p.V11A 0.09 deleterious(0) benign(0.05) TCGA-G4-6588-01 6 130392206 130392206 T C L3MBTL3 Missense_Mutation p.V393A 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 6 130465636 130465636 T C SAMD3 3'UTR 0.23 TCGA-G4-6588-01 6 131895327 131895327 A T ARG1 Intron 0.30 TCGA-G4-6588-01 6 13365230 13365230 G T GFOD1 Silent p.T306T 0.18 TCGA-G4-6588-01 6 133827225 133827225 G A EYA4 Intron 0.31 TCGA-G4-6588-01 6 13625912 13625912 A G RANBP9 Missense_Mutation p.C678R 0.24 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 6 138640844 138640844 A G KIAA1244 Silent p.P1493P 0.36 TCGA-G4-6588-01 6 138745761 138745761 C T NHSL1 Silent p.K1430K 0.33 TCGA-G4-6588-01 6 139106476 139106476 A - CCDC28A Frame_Shift_Del p.T237Qfs*14 0.38 TCGA-G4-6588-01 6 13978931 13978932 - A RNF182 3'UTR 0.26 TCGA-G4-6588-01 6 146997484 146997484 A C ADGB Missense_Mutation p.S375R 0.31 tolerated(0.1) benign(0.157) TCGA-G4-6588-01 6 150048312 150048313 - A NUP43 Frame_Shift_Ins p.L312Ffs*4 0.17 TCGA-G4-6588-01 6 150267521 150267521 G A ULBP2 Silent p.L121L 0.28 TCGA-G4-6588-01 6 151672020 151672020 G A AKAP12 Missense_Mutation p.G832R 0.39 tolerated(0.12) probably_damaging(0.999) TCGA-G4-6588-01 6 151773568 151773568 T - C6orf211 5'UTR 0.69 TCGA-G4-6588-01 6 152265418 152265418 C A ESR1 Missense_Mutation p.L291I 0.36 tolerated(0.22) benign(0.002) TCGA-G4-6588-01 6 152665235 152665235 C A SYNE1 Missense_Mutation p.R4069M 0.23 benign(0.405) TCGA-G4-6588-01 6 152756880 152756880 T - SYNE1 Intron 0.29 TCGA-G4-6588-01 6 155123173 155123173 A G SCAF8 Silent p.L225L 0.32 TCGA-G4-6588-01 6 155451307 155451307 G A TIAM2 Missense_Mutation p.R317H 0.23 tolerated(0.12) benign(0.39) TCGA-G4-6588-01 6 157528201 157528201 G T ARID1B Missense_Mutation p.G1976W 0.35 probably_damaging(1) TCGA-G4-6588-01 6 158549145 158549145 C A SERAC1 Missense_Mutation p.R337L 0.41 tolerated(0.06) benign(0.091) TCGA-G4-6588-01 6 160328247 160328247 T C MAS1 Missense_Mutation p.L87S 0.33 deleterious(0.01) benign(0.16) TCGA-G4-6588-01 6 160506062 160506062 G A IGF2R Missense_Mutation p.G2035E 0.36 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 6 161137724 161137724 G A PLG Missense_Mutation p.R239K 0.30 deleterious(0) benign(0.001) TCGA-G4-6588-01 6 163987083 163987084 AA G QKI Intron 0.08 TCGA-G4-6588-01 6 163987695 163987695 T - QKI Intron 0.24 TCGA-G4-6588-01 6 165693475 165693475 T C C6orf118 3'UTR 0.36 TCGA-G4-6588-01 6 165801864 165801864 C T PDE10A Missense_Mutation p.D579N 0.33 tolerated(0.26) benign(0.005) TCGA-G4-6588-01 6 168188058 168188058 T A C6orf123 3'UTR 0.43 TCGA-G4-6588-01 6 168376731 168376731 C A RP3-470B24.5 RNA 0.30 TCGA-G4-6588-01 6 168999584 168999584 C T SMOC2 Missense_Mutation p.H253Y 0.09 tolerated(0.37) benign(0.212) TCGA-G4-6588-01 6 169857578 169857578 A G WDR27 3'UTR 0.30 TCGA-G4-6588-01 6 17788053 17788053 T C KIF13A Silent p.R1105R 0.20 TCGA-G4-6588-01 6 20548887 20548887 T C CDKAL1 Silent p.D79D 0.25 TCGA-G4-6588-01 6 21595064 21595064 T G SOX4 Missense_Mutation p.L100R 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 6 21596217 21596217 G - SOX4 3'UTR 0.32 TCGA-G4-6588-01 6 22287511 22287511 T - PRL 3'UTR 0.23 TCGA-G4-6588-01 6 22290426 22290426 C T PRL Missense_Mutation p.G157S 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 6 22294776 22294776 C T PRL Silent p.L22L 0.35 TCGA-G4-6588-01 6 24357600 24357601 - G KAAG1 5'UTR 0.21 TCGA-G4-6588-01 6 24653319 24653319 A G TDP2 Silent p.H233H 0.32 TCGA-G4-6588-01 6 26017447 26017447 G T HIST1H1A Missense_Mutation p.P172T 0.29 tolerated(0.44) unknown(0) TCGA-G4-6588-01 6 26018017 26018017 A - HIST1H1A 5'UTR 0.20 TCGA-G4-6588-01 6 26020781 26020781 G A HIST1H3A Missense_Mutation p.A22T 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.817) TCGA-G4-6588-01 6 26216845 26216847 AGG - HIST1H2BG In_Frame_Del p.P9del 0.25 TCGA-G4-6588-01 6 26225702 26225702 A G HIST1H3E Missense_Mutation p.D107G 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6588-01 6 26446195 26446195 G A BTN3A3 Missense_Mutation p.A233T 0.24 tolerated(0.36) benign(0.178) TCGA-G4-6588-01 6 27419668 27419668 G A ZNF184 Missense_Mutation p.P557L 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-G4-6588-01 6 27777905 27777906 - A HIST1H3H Frame_Shift_Ins p.Q20Afs*55 0.29 TCGA-G4-6588-01 6 29342126 29342126 C T OR12D3 Silent p.Q313Q 0.29 TCGA-G4-6588-01 6 30610597 30610597 C T ATAT1 Silent p.R247R 0.36 TCGA-G4-6588-01 6 30620484 30620484 G A C6orf136 Missense_Mutation p.R456H 0.35 tolerated(0.3) benign(0.145) TCGA-G4-6588-01 6 30632928 30632928 G A DHX16 Nonsense_Mutation p.Q349* 0.38 TCGA-G4-6588-01 6 30692147 30692147 C T TUBB Silent p.F436F 0.27 TCGA-G4-6588-01 6 30860214 30860214 C T DDR1 Missense_Mutation p.R332W 0.34 deleterious(0) probably_damaging(0.99) TCGA-G4-6588-01 6 30863232 30863232 G A DDR1 Missense_Mutation p.R522H 0.29 tolerated(0.42) possibly_damaging(0.676) TCGA-G4-6588-01 6 31133859 31133859 T C POU5F1 Intron 0.09 TCGA-G4-6588-01 6 31324160 31324162 GGA - HLA-B In_Frame_Del p.L134del 0.67 TCGA-G4-6588-01 6 31612841 31612841 T G BAG6 Silent p.S423S 0.13 TCGA-G4-6588-01 6 31615450 31615450 G A BAG6 Missense_Mutation p.R242C 0.19 deleterious(0.05) benign(0.402) TCGA-G4-6588-01 6 31737558 31737558 A G VWA7 Missense_Mutation p.L404P 0.24 deleterious(0.01) probably_damaging(0.918) TCGA-G4-6588-01 6 31855928 31855928 C A EHMT2 Missense_Mutation p.E545D 0.32 tolerated(0.07) possibly_damaging(0.527) TCGA-G4-6588-01 6 31868324 31868324 G - ZBTB12 Frame_Shift_Del p.S254Afs*3 0.27 TCGA-G4-6588-01 6 31901422 31901422 G A CFB Missense_Mutation p.A98T 0.36 tolerated(0.95) benign(0.002) TCGA-G4-6588-01 6 32013063 32013063 C A TNXB 5'UTR 0.14 TCGA-G4-6588-01 6 32132444 32132445 GA - EGFL8 5'UTR 0.25 TCGA-G4-6588-01 6 32165134 32165134 C T NOTCH4 Missense_Mutation p.R1665Q 0.30 tolerated(0.11) benign(0.044) TCGA-G4-6588-01 6 32181941 32181942 - C NOTCH4 Frame_Shift_Ins p.T705Dfs*23 0.13 TCGA-G4-6588-01 6 32796761 32796761 G - TAP2 Intron 0.22 TCGA-G4-6588-01 6 32797191 32797191 G A TAP2 Nonsense_Mutation p.Q640* 0.39 TCGA-G4-6588-01 6 32944618 32944618 G A BRD2 Missense_Mutation p.A369T 0.38 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 6 33286921 33286921 G A DAXX Silent p.P672P 0.36 TCGA-G4-6588-01 6 33374229 33374229 C T KIFC1 Missense_Mutation p.T598M 0.42 deleterious(0) probably_damaging(0.993) TCGA-G4-6588-01 6 35911621 35911621 T - SLC26A8 3'UTR 0.27 TCGA-G4-6588-01 6 36099083 36099083 C T MAPK13 Missense_Mutation p.A52V 0.08 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 6 36442674 36442674 A G KCTD20 Missense_Mutation p.N90S 0.30 tolerated_low_confidence(0.78) benign(0) TCGA-G4-6588-01 6 37250080 37250080 C T TBC1D22B Missense_Mutation p.R181W 0.41 deleterious(0) probably_damaging(0.989) TCGA-G4-6588-01 6 37321873 37321874 CA - RNF8 5'UTR 0.39 TCGA-G4-6588-01 6 3850905 3850905 C T FAM50B Missense_Mutation p.S287L 0.35 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 6 38820517 38820517 T C DNAH8 Silent p.H1621H 0.29 TCGA-G4-6588-01 6 38830059 38830059 C A DNAH8 Nonsense_Mutation p.C1828* 0.29 TCGA-G4-6588-01 6 39867902 39867902 T C DAAM2 Missense_Mutation p.V910A 0.37 deleterious(0.02) benign(0.093) TCGA-G4-6588-01 6 39873524 39873524 A C MOCS1 3'UTR 0.25 TCGA-G4-6588-01 6 40400130 40400131 - C LRFN2 Frame_Shift_Ins p.N242* 0.29 TCGA-G4-6588-01 6 40400791 40400791 C T LRFN2 Missense_Mutation p.C21Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 6 4069569 4069569 T C FAM217A Silent p.L296L 0.09 TCGA-G4-6588-01 6 41160115 41160115 C - TREML2 3'UTR 0.14 TCGA-G4-6588-01 6 4133873 4133873 C A ECI2 Missense_Mutation p.K41N 0.33 tolerated(0.14) benign(0.321) TCGA-G4-6588-01 6 41738400 41738400 G A FRS3 Missense_Mutation p.T479I 0.38 deleterious(0) possibly_damaging(0.846) TCGA-G4-6588-01 6 42054617 42054617 A G TAF8 3'Flank 0.44 TCGA-G4-6588-01 6 43491640 43491640 T C XPO5 Missense_Mutation p.D1194G 0.30 tolerated(0.22) benign(0.007) TCGA-G4-6588-01 6 43970643 43970643 G A C6orf223 Missense_Mutation p.R170Q 0.27 tolerated_low_confidence(0.19) unknown(0) TCGA-G4-6588-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.31 TCGA-G4-6588-01 6 46675884 46675884 A G PLA2G7 Missense_Mutation p.L295P 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 6 46977267 46977267 A G GPR110 Missense_Mutation p.L635S 0.28 deleterious(0.01) possibly_damaging(0.71) TCGA-G4-6588-01 6 47251860 47251860 T C TNFRSF21 Missense_Mutation p.M353V 0.32 deleterious(0) possibly_damaging(0.757) TCGA-G4-6588-01 6 47563732 47563732 A G CD2AP Missense_Mutation p.K415R 0.43 tolerated(0.42) probably_damaging(0.99) TCGA-G4-6588-01 6 52661027 52661027 A T GSTA1 Silent p.I75I 0.29 TCGA-G4-6588-01 6 53787758 53787758 G A LRRC1 3'UTR 0.38 TCGA-G4-6588-01 6 56347482 56347482 T C DST Missense_Mutation p.Q4511R 0.27 probably_damaging(0.998) TCGA-G4-6588-01 6 56474034 56474034 G T DST Intron 0.35 TCGA-G4-6588-01 6 70423652 70423652 C T LMBRD1 Missense_Mutation p.R267H 0.07 tolerated(0.11) benign(0.058) TCGA-G4-6588-01 6 70990575 70990575 A T COL9A1 Silent p.G305G 0.32 TCGA-G4-6588-01 6 7229257 7229257 T C RREB1 Missense_Mutation p.C309R 0.27 deleterious(0) probably_damaging(0.995) TCGA-G4-6588-01 6 74475811 74475811 C - CD109 Frame_Shift_Del p.Q424Kfs*20 0.23 TCGA-G4-6588-01 6 7565621 7565621 G A DSP Silent p.L269L 0.33 TCGA-G4-6588-01 6 75833716 75833716 A - COL12A1 Frame_Shift_Del p.F2273Lfs*20 0.19 TCGA-G4-6588-01 6 76380428 76380428 C T SENP6 Missense_Mutation p.P462S 0.26 deleterious(0) probably_damaging(0.998) TCGA-G4-6588-01 6 76572324 76572324 G A MYO6 Missense_Mutation p.A520T 0.24 tolerated(0.31) unknown(0) TCGA-G4-6588-01 6 76657093 76657093 C T IMPG1 Missense_Mutation p.R661H 0.32 tolerated(0.13) benign(0.284) TCGA-G4-6588-01 6 83733743 83733743 A G UBE3D Missense_Mutation p.Y228H 0.29 deleterious(0) possibly_damaging(0.648) TCGA-G4-6588-01 6 84871476 84871476 G A KIAA1009 Missense_Mutation p.L889F 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 6 88372786 88372786 C T ORC3 Missense_Mutation p.A587V 0.31 tolerated(0.45) benign(0.001) TCGA-G4-6588-01 6 89324036 89324036 G A RNGTT Nonsense_Mutation p.Q529* 0.30 TCGA-G4-6588-01 6 90484380 90484380 G A MDN1 Missense_Mutation p.R632W 0.32 possibly_damaging(0.676) TCGA-G4-6588-01 6 93964482 93964482 G A EPHA7 Silent p.P805P 0.31 TCGA-G4-6588-01 6 96653703 96653703 G T FUT9 3'UTR 0.33 TCGA-G4-6588-01 6 99284221 99284221 A - POU3F2 3'UTR 0.28 TCGA-G4-6588-01 7 100085888 100085888 C T NYAP1 Missense_Mutation p.P182S 0.29 tolerated(0.41) benign(0.033) TCGA-G4-6588-01 7 100198418 100198418 C T FBXO24 Missense_Mutation p.P585S 0.33 tolerated_low_confidence(0.1) possibly_damaging(0.641) TCGA-G4-6588-01 7 100281519 100281519 G T GIGYF1 Missense_Mutation p.P631T 0.23 deleterious(0.02) unknown(0) TCGA-G4-6588-01 7 100681721 100681721 C T MUC17 Missense_Mutation p.R2342C 0.33 unknown(0) TCGA-G4-6588-01 7 100685150 100685151 - C MUC17 Frame_Shift_Ins p.S3486Qfs*18 0.26 TCGA-G4-6588-01 7 100806796 100806796 G C VGF Missense_Mutation p.D443E 0.26 deleterious_low_confidence(0.02) unknown(0) TCGA-G4-6588-01 7 100844192 100844192 G A MOGAT3 5'UTR 0.35 TCGA-G4-6588-01 7 101821835 101821835 C T CUX1 Silent p.D316D 0.31 TCGA-G4-6588-01 7 101926396 101926396 C - SH2B2 5'Flank 0.28 TCGA-G4-6588-01 7 102147164 102147164 G A RASA4B Missense_Mutation p.R136C 0.16 tolerated(0.11) benign(0.049) TCGA-G4-6588-01 7 103137041 103137041 G A RELN Missense_Mutation p.A3042V 0.30 deleterious(0) possibly_damaging(0.595) TCGA-G4-6588-01 7 105105769 105105769 T G PUS7 Missense_Mutation p.K540Q 0.29 tolerated(0.36) benign(0.05) TCGA-G4-6588-01 7 107116072 107116072 T - GPR22 3'UTR 0.14 TCGA-G4-6588-01 7 1098657 1098657 A G GPR146 3'UTR 0.21 TCGA-G4-6588-01 7 111381186 111381186 C T DOCK4 Silent p.G1659G 0.28 TCGA-G4-6588-01 7 111423966 111423966 G A DOCK4 Silent p.G1148G 0.33 TCGA-G4-6588-01 7 112112906 112112906 G A IFRD1 Missense_Mutation p.R419H 0.25 tolerated(0.11) benign(0.036) TCGA-G4-6588-01 7 116140589 116140589 C T CAV2 Intron 0.35 TCGA-G4-6588-01 7 116165017 116165017 T - CAV1 5'UTR 0.35 TCGA-G4-6588-01 7 121943771 121943771 T - FEZF1 Frame_Shift_Del p.I241Sfs*35 0.24 TCGA-G4-6588-01 7 122027176 122027176 G T CADPS2 Missense_Mutation p.D1072E 0.34 tolerated(0.12) benign(0.32) TCGA-G4-6588-01 7 122342706 122342706 G A RNF148 Silent p.N33N 0.25 TCGA-G4-6588-01 7 123277059 123277059 A - ASB15 3'UTR 0.19 TCGA-G4-6588-01 7 126173192 126173192 T C GRM8 Silent p.S748S 0.35 TCGA-G4-6588-01 7 12666254 12666254 T - SCIN Frame_Shift_Del p.F344Lfs*25 0.09 TCGA-G4-6588-01 7 128519855 128519855 G A KCP RNA 0.27 TCGA-G4-6588-01 7 128543819 128543819 G C AC025594.1 5'Flank 0.33 TCGA-G4-6588-01 7 129053511 129053511 C A AHCYL2 Silent p.S481S 0.41 TCGA-G4-6588-01 7 130042527 130042527 C T CEP41 Missense_Mutation p.R179H 0.21 deleterious(0) probably_damaging(0.995) TCGA-G4-6588-01 7 130140683 130140683 A G MEST Missense_Mutation p.D234G 0.31 deleterious(0.03) possibly_damaging(0.874) TCGA-G4-6588-01 7 131128440 131128440 A G MKLN1 Silent p.G458G 0.32 TCGA-G4-6588-01 7 132174136 132174136 C A PLXNA4 Missense_Mutation p.R429M 0.21 tolerated(0.1) benign(0.178) TCGA-G4-6588-01 7 134001523 134001523 A G SLC35B4 5'UTR 0.33 TCGA-G4-6588-01 7 134852497 134852497 C T C7orf49 Missense_Mutation p.G67E 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6588-01 7 135323372 135323372 C T NUP205 Missense_Mutation p.A1778V 0.36 tolerated(0.67) benign(0.002) TCGA-G4-6588-01 7 135370315 135370315 G A SLC13A4 Silent p.S520S 0.29 TCGA-G4-6588-01 7 135412387 135412387 G A SLC13A4 5'UTR 0.24 TCGA-G4-6588-01 7 137567227 137567227 A G CREB3L2 Missense_Mutation p.L473P 0.27 tolerated(0.28) probably_damaging(0.995) TCGA-G4-6588-01 7 139094365 139094366 AG - LUC7L2 Frame_Shift_Del p.E319Rfs*34 0.31 TCGA-G4-6588-01 7 13971306 13971306 C T ETV1 Missense_Mutation p.R208H 0.34 tolerated(0.06) probably_damaging(0.951) TCGA-G4-6588-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-G4-6588-01 7 140477847 140477847 C T BRAF Silent p.V487V 0.26 TCGA-G4-6588-01 7 142611835 142611835 A C TRPV5 Silent p.A498A 0.33 TCGA-G4-6588-01 7 142627150 142627150 T C TRPV5 Intron 0.34 TCGA-G4-6588-01 7 143633237 143633237 A T OR2F2 Silent p.L304L 0.16 TCGA-G4-6588-01 7 143792522 143792522 A T OR2A12 Missense_Mutation p.I108F 0.06 tolerated(0.7) benign(0.028) TCGA-G4-6588-01 7 144068384 144068384 G A ARHGEF5 Missense_Mutation p.R1221H 0.14 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 7 146741127 146741127 A C CNTNAP2 Missense_Mutation p.E177D 0.27 deleterious(0) probably_damaging(0.996) TCGA-G4-6588-01 7 1484422 1484422 G - MICALL2 Frame_Shift_Del p.G429Afs*68 0.22 TCGA-G4-6588-01 7 148802233 148802233 T C ZNF425 Missense_Mutation p.K244E 0.32 deleterious(0.01) possibly_damaging(0.662) TCGA-G4-6588-01 7 149462940 149462940 C T ZNF467 Silent p.P217P 0.56 TCGA-G4-6588-01 7 149483212 149483212 C - SSPO RNA 0.26 TCGA-G4-6588-01 7 149557820 149557820 C T ZNF862 Missense_Mutation p.A524V 0.30 tolerated(0.13) probably_damaging(0.998) TCGA-G4-6588-01 7 150417406 150417406 A G GIMAP1 Missense_Mutation p.Y105C 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-G4-6588-01 7 150558259 150558259 C - AOC1 Frame_Shift_Del p.P741Lfs*54 0.25 TCGA-G4-6588-01 7 150642503 150642503 C - KCNH2 Frame_Shift_Del p.A1144Pfs*111 0.34 TCGA-G4-6588-01 7 150700626 150700626 T - NOS3 Intron 0.38 TCGA-G4-6588-01 7 151949688 151949688 C A KMT2C Missense_Mutation p.G471V 0.31 probably_damaging(0.939) TCGA-G4-6588-01 7 154667672 154667672 C T DPP6 Missense_Mutation p.T647M 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 7 155094089 155094089 G A INSIG1 Silent p.T222T 0.29 TCGA-G4-6588-01 7 155530971 155530971 G A RBM33 Silent p.P537P 0.29 TCGA-G4-6588-01 7 156436576 156436576 T C RNF32 Missense_Mutation p.L2S 0.36 tolerated(0.06) benign(0.008) TCGA-G4-6588-01 7 156480782 156480782 T C LMBR1 Silent p.T443T 0.34 TCGA-G4-6588-01 7 156742634 156742634 G A NOM1 Missense_Mutation p.R68H 0.25 tolerated_low_confidence(0.17) benign(0.12) TCGA-G4-6588-01 7 16644475 16644475 C G ANKMY2 Splice_Site p.X295_splice 0.29 TCGA-G4-6588-01 7 18631265 18631265 C T HDAC9 Missense_Mutation p.T181M 0.25 tolerated(0.11) probably_damaging(0.989) TCGA-G4-6588-01 7 1887020 1887020 C T AC110781.3 Missense_Mutation p.R89C 0.26 benign(0.137) TCGA-G4-6588-01 7 19184573 19184573 G A FERD3L Missense_Mutation p.S138F 0.32 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 7 20371449 20371450 - T ITGB8 Frame_Shift_Ins p.T10Yfs*34 0.27 TCGA-G4-6588-01 7 21641175 21641175 C T DNAH11 Missense_Mutation p.T1196M 0.27 probably_damaging(0.948) TCGA-G4-6588-01 7 27135306 27135306 G - HOXA1 Frame_Shift_Del p.Q76Sfs*38 0.21 TCGA-G4-6588-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.27 TCGA-G4-6588-01 7 30538439 30538439 G T GGCT Missense_Mutation p.P135T 0.28 tolerated(0.07) probably_damaging(0.984) TCGA-G4-6588-01 7 32909568 32909568 A G KBTBD2 Missense_Mutation p.W421R 0.23 tolerated(0.07) benign(0.027) TCGA-G4-6588-01 7 33945327 33945327 C - BMPER Frame_Shift_Del p.M36Cfs*8 0.32 TCGA-G4-6588-01 7 36194189 36194189 G A EEPD1 Missense_Mutation p.V86I 0.21 tolerated(0.3) benign(0.162) TCGA-G4-6588-01 7 37934138 37934138 T C NME8 Silent p.P490P 0.26 TCGA-G4-6588-01 7 4153692 4153692 C T SDK1 Silent p.N1203N 0.34 TCGA-G4-6588-01 7 4218193 4218193 C T SDK1 Silent p.P1691P 0.32 TCGA-G4-6588-01 7 43622865 43622865 G A STK17A Missense_Mutation p.G8D 0.17 tolerated_low_confidence(0.43) unknown(0) TCGA-G4-6588-01 7 43918255 43918255 G A URGCP Silent p.D269D 0.34 TCGA-G4-6588-01 7 44054274 44054274 G T SPDYE1 3'Flank 0.21 TCGA-G4-6588-01 7 44184673 44184674 - C GCK 3'UTR 0.23 TCGA-G4-6588-01 7 45753670 45753670 G T ADCY1 3'UTR 0.40 TCGA-G4-6588-01 7 4800921 4800921 T C FOXK1 Splice_Site p.X641_splice 0.37 TCGA-G4-6588-01 7 48092405 48092405 C T C7orf57 Silent p.T238T 0.29 TCGA-G4-6588-01 7 48314513 48314513 T C ABCA13 Silent p.L1750L 0.41 TCGA-G4-6588-01 7 48451986 48451986 G A ABCA13 Missense_Mutation p.A4089T 0.37 possibly_damaging(0.804) TCGA-G4-6588-01 7 51111184 51111184 T C COBL Silent p.T434T 0.36 TCGA-G4-6588-01 7 5401283 5401283 C T TNRC18 Missense_Mutation p.A1535T 0.29 benign(0.061) TCGA-G4-6588-01 7 5414085 5414085 C T TNRC18 Missense_Mutation p.A944T 0.20 benign(0.01) TCGA-G4-6588-01 7 54610181 54610181 A G VSTM2A 5'UTR 0.33 TCGA-G4-6588-01 7 54617680 54617680 A G VSTM2A Missense_Mutation p.N151D 0.29 tolerated(0.2) benign(0.069) TCGA-G4-6588-01 7 55468927 55468927 C T LANCL2 Missense_Mutation p.R247C 0.27 deleterious(0) probably_damaging(0.99) TCGA-G4-6588-01 7 5769140 5769140 C T RNF216 Missense_Mutation p.D438N 0.31 deleterious(0.05) probably_damaging(0.974) TCGA-G4-6588-01 7 6013059 6013059 C T PMS2 Missense_Mutation p.A854T 0.12 tolerated(0.08) probably_damaging(0.913) TCGA-G4-6588-01 7 6189710 6189710 T A USP42 Missense_Mutation p.I628N 0.12 tolerated(0.1) possibly_damaging(0.469) TCGA-G4-6588-01 7 6370230 6370230 C T FAM220A Missense_Mutation p.A186T 0.38 deleterious(0.02) benign(0.003) TCGA-G4-6588-01 7 64151707 64151707 T C ZNF107 5'UTR 0.28 TCGA-G4-6588-01 7 66764347 66764347 G A Y_RNA 5'Flank 0.14 TCGA-G4-6588-01 7 72430664 72430664 A G TRIM74 Missense_Mutation p.V205A 0.21 deleterious(0.01) benign(0.2) TCGA-G4-6588-01 7 72436499 72436499 T C TRIM74 Missense_Mutation p.S64G 0.15 tolerated(0.07) benign(0.196) TCGA-G4-6588-01 7 72727380 72727380 T C TRIM50 Missense_Mutation p.Y334C 0.30 tolerated(0.15) benign(0.048) TCGA-G4-6588-01 7 72742383 72742383 C T FKBP6 5'UTR 0.16 TCGA-G4-6588-01 7 72891540 72891540 C A BAZ1B Missense_Mutation p.A751S 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-G4-6588-01 7 73119295 73119295 C T STX1A Intron 0.31 TCGA-G4-6588-01 7 73602045 73602045 A G EIF4H Missense_Mutation p.Q55R 0.25 deleterious(0.05) possibly_damaging(0.57) TCGA-G4-6588-01 7 74303815 74303815 T - STAG3L2 RNA 0.29 TCGA-G4-6588-01 7 80387688 80387688 C A SEMA3C Missense_Mutation p.W534C 0.26 deleterious(0) probably_damaging(0.997) TCGA-G4-6588-01 7 81399399 81399399 C T HGF 5'UTR 0.31 TCGA-G4-6588-01 7 819716 819716 A G HEATR2 Missense_Mutation p.Y789C 0.11 tolerated(0.11) possibly_damaging(0.593) TCGA-G4-6588-01 7 87104786 87104786 G A ABCB4 Intron 0.42 TCGA-G4-6588-01 7 87214992 87214992 C T ABCB1 Missense_Mutation p.R41H 0.34 deleterious(0.01) probably_damaging(0.949) TCGA-G4-6588-01 7 88956723 88956724 - A ZNF804B Frame_Shift_Ins p.Q108Tfs*6 0.30 TCGA-G4-6588-01 7 89866027 89866027 T - STEAP2 3'UTR 0.40 TCGA-G4-6588-01 7 90741876 90741876 G A CDK14 Missense_Mutation p.A374T 0.30 tolerated(0.08) benign(0.236) TCGA-G4-6588-01 7 91630684 91630684 G A AKAP9 Missense_Mutation p.E485K 0.26 possibly_damaging(0.481) TCGA-G4-6588-01 7 92953023 92953024 - T CCDC132 Frame_Shift_Ins p.G655Wfs*4 0.26 TCGA-G4-6588-01 7 94917903 94917903 A G PPP1R9A Missense_Mutation p.Q1262R 0.24 tolerated(0.65) benign(0.001) TCGA-G4-6588-01 7 94991715 94991715 T C PON3 Missense_Mutation p.K289E 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6588-01 7 96653656 96653656 C T DLX5 Missense_Mutation p.D94N 0.13 deleterious(0) probably_damaging(0.994) TCGA-G4-6588-01 7 96653771 96653771 C T DLX5 Silent p.P55P 0.12 TCGA-G4-6588-01 7 97821393 97821393 T - LMTK2 Frame_Shift_Del p.F540Lfs*16 0.25 TCGA-G4-6588-01 7 97842192 97842192 C T BHLHA15 3'UTR 0.41 TCGA-G4-6588-01 7 97933623 97933623 G - BAIAP2L1 Frame_Shift_Del p.P436Hfs*60 0.27 TCGA-G4-6588-01 7 98256586 98256586 G A NPTX2 Missense_Mutation p.G333D 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 7 98775649 98775649 A T KPNA7 Missense_Mutation p.L453Q 0.38 deleterious(0.05) benign(0.327) TCGA-G4-6588-01 7 98782625 98782625 G A KPNA7 Missense_Mutation p.A354V 0.40 deleterious(0.01) possibly_damaging(0.745) TCGA-G4-6588-01 7 99103705 99103706 - C ZKSCAN5 Frame_Shift_Ins p.A16Sfs*2 0.27 TCGA-G4-6588-01 7 99227506 99227506 C T ZSCAN25 Missense_Mutation p.R500W 0.28 deleterious(0.03) probably_damaging(0.957) TCGA-G4-6588-01 7 99675037 99675037 T A ZNF3 5'UTR 0.10 TCGA-G4-6588-01 7 99693045 99693045 G - MCM7 Frame_Shift_Del p.S549Pfs*8 0.33 TCGA-G4-6588-01 7 99693774 99693774 G T MCM7 Silent p.G406G 0.29 TCGA-G4-6588-01 8 101541861 101541861 G A ANKRD46 Silent p.F67F 0.19 TCGA-G4-6588-01 8 10387144 10387144 C T PRSS55 Silent p.G94G 0.32 TCGA-G4-6588-01 8 10396226 10396226 C A PRSS55 Missense_Mutation p.P328T 0.42 deleterious(0.02) possibly_damaging(0.593) TCGA-G4-6588-01 8 104778539 104778539 A G RIMS2 Missense_Mutation p.T158A 0.16 tolerated_low_confidence(0.67) benign(0.001) TCGA-G4-6588-01 8 105360822 105360822 T C DCSTAMP Silent p.L14L 0.18 TCGA-G4-6588-01 8 105405091 105405091 A T DPYS Missense_Mutation p.V455D 0.30 deleterious(0) possibly_damaging(0.758) TCGA-G4-6588-01 8 110257620 110257620 G T NUDCD1 Missense_Mutation p.L464I 0.33 tolerated(0.15) benign(0.412) TCGA-G4-6588-01 8 110492349 110492349 C T PKHD1L1 Missense_Mutation p.A3103V 0.08 tolerated(0.06) benign(0.289) TCGA-G4-6588-01 8 11058456 11058456 C T XKR6 Nonsense_Mutation p.W131* 0.38 TCGA-G4-6588-01 8 110980709 110980709 T C KCNV1 Missense_Mutation p.I371V 0.31 tolerated(0.19) benign(0.001) TCGA-G4-6588-01 8 113529282 113529282 G A CSMD3 Silent p.P1579P 0.28 TCGA-G4-6588-01 8 116631559 116631559 A C TRPS1 Missense_Mutation p.F256V 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-G4-6588-01 8 11702561 11702561 G A CTSB 3'UTR 0.35 TCGA-G4-6588-01 8 117950554 117950554 G A AARD Silent p.A24A 0.32 TCGA-G4-6588-01 8 120847088 120847088 A G DSCC1 3'UTR 0.32 TCGA-G4-6588-01 8 124027588 124027588 G T DERL1 3'UTR 0.50 TCGA-G4-6588-01 8 124265951 124265951 C A ZHX1 Missense_Mutation p.G746W 0.28 deleterious(0) probably_damaging(0.982) TCGA-G4-6588-01 8 124413163 124413163 G A ATAD2 5'Flank 0.60 TCGA-G4-6588-01 8 125080048 125080048 G A FER1L6 Splice_Site p.X1240_splice 0.25 TCGA-G4-6588-01 8 12863817 12863817 C T KIAA1456 Missense_Mutation p.R36C 0.38 deleterious(0.04) benign(0.111) TCGA-G4-6588-01 8 131072913 131072913 G A ASAP1 Missense_Mutation p.A1035V 0.33 tolerated(0.21) benign(0.034) TCGA-G4-6588-01 8 132968036 132968036 T G EFR3A Silent p.S220S 0.29 TCGA-G4-6588-01 8 133090117 133090118 - T HHLA1 Frame_Shift_Ins p.P379Tfs*33 0.15 TCGA-G4-6588-01 8 133141978 133141978 G T KCNQ3 Missense_Mutation p.P717H 0.31 tolerated(0.05) benign(0.001) TCGA-G4-6588-01 8 133900272 133900272 G A TG Silent p.R740R 0.34 TCGA-G4-6588-01 8 139164551 139164551 G T FAM135B Missense_Mutation p.L723I 0.26 tolerated(0.63) benign(0.007) TCGA-G4-6588-01 8 140630762 140630762 C T KCNK9 Silent p.A288A 0.36 TCGA-G4-6588-01 8 141542059 141542059 C T AGO2 3'UTR 0.41 TCGA-G4-6588-01 8 141561516 141561516 G A AGO2 Missense_Mutation p.P430L 0.36 deleterious(0) benign(0.417) TCGA-G4-6588-01 8 142477513 142477513 C - MROH5 3'UTR 0.45 TCGA-G4-6588-01 8 144733545 144733545 C T ZNF623 Silent p.N501N 0.34 TCGA-G4-6588-01 8 144945516 144945516 G A EPPK1 Missense_Mutation p.R636W 0.41 probably_damaging(0.998) TCGA-G4-6588-01 8 144996829 144996829 G A PLEC Missense_Mutation p.A2560V 0.27 possibly_damaging(0.776) TCGA-G4-6588-01 8 145006875 145006875 C T PLEC Silent p.Q718Q 0.31 TCGA-G4-6588-01 8 145556952 145556952 C T SCRT1 Silent p.A314A 0.37 TCGA-G4-6588-01 8 145741409 145741409 C T RECQL4 Missense_Mutation p.R365Q 0.27 deleterious(0.04) benign(0.066) TCGA-G4-6588-01 8 145746705 145746705 C T LRRC14 Missense_Mutation p.P442L 0.40 tolerated(0.14) benign(0.074) TCGA-G4-6588-01 8 145948702 145948702 T - ZNF251 Frame_Shift_Del p.T115Pfs*10 0.29 TCGA-G4-6588-01 8 146003460 146003460 G A ZNF34 Silent p.D62D 0.31 TCGA-G4-6588-01 8 146068096 146068096 G T ZNF7 Missense_Mutation p.S535I 0.35 deleterious(0.03) probably_damaging(1) TCGA-G4-6588-01 8 1626769 1626769 C T DLGAP2 Missense_Mutation p.A813V 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-G4-6588-01 8 16884876 16884876 C T MICU3 Missense_Mutation p.R30W 0.61 deleterious_low_confidence(0.03) benign(0.249) TCGA-G4-6588-01 8 16884924 16884924 C T MICU3 Nonsense_Mutation p.R46* 0.40 TCGA-G4-6588-01 8 16935339 16935339 A G MICU3 Silent p.S205S 0.32 TCGA-G4-6588-01 8 17072744 17072744 A G ZDHHC2 Splice_Site p.X317_splice 0.34 TCGA-G4-6588-01 8 17161999 17161999 G A MTMR7 Missense_Mutation p.A461V 0.22 tolerated(0.06) benign(0.166) TCGA-G4-6588-01 8 17415818 17415818 C A SLC7A2 Missense_Mutation p.L444M 0.30 deleterious(0.02) probably_damaging(0.945) TCGA-G4-6588-01 8 17817621 17817621 T C PCM1 Silent p.T713T 0.33 TCGA-G4-6588-01 8 18413785 18413785 G - PSD3 Frame_Shift_Del p.D955Tfs*14 0.25 TCGA-G4-6588-01 8 19315956 19315956 G A CSGALNACT1 Nonsense_Mutation p.Q278* 0.27 TCGA-G4-6588-01 8 20007202 20007202 A G SLC18A1 Silent p.G377G 0.29 TCGA-G4-6588-01 8 21905639 21905639 G A FGF17 Missense_Mutation p.R177H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 8 22451285 22451285 C - PDLIM2 Frame_Shift_Del p.G559Afs*10 0.35 TCGA-G4-6588-01 8 22487477 22487477 T - BIN3 Frame_Shift_Del p.K113Sfs*13 0.29 TCGA-G4-6588-01 8 23116246 23116246 T - CHMP7 Frame_Shift_Del p.F322Lfs*8 0.25 TCGA-G4-6588-01 8 23428965 23428965 T C SLC25A37 Missense_Mutation p.L205P 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 8 24811736 24811736 G C CTD-2168K21.2 5'Flank 0.28 TCGA-G4-6588-01 8 25249427 25249427 T C DOCK5 Silent p.N1457N 0.14 TCGA-G4-6588-01 8 25287197 25287197 A - KCTD9 3'UTR 0.18 TCGA-G4-6588-01 8 26265572 26265572 G A BNIP3L Silent p.A138A 0.36 TCGA-G4-6588-01 8 26365514 26365514 C A PNMA2 Missense_Mutation p.R253M 0.39 deleterious(0.04) possibly_damaging(0.714) TCGA-G4-6588-01 8 26439492 26439492 G A DPYSL2 Missense_Mutation p.R16H 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-G4-6588-01 8 27145248 27145248 C T TRIM35 Missense_Mutation p.C434Y 0.48 tolerated(0.51) probably_damaging(0.997) TCGA-G4-6588-01 8 27593758 27593758 C A CCDC25 Missense_Mutation p.G201V 0.27 tolerated(0.13) benign(0.265) TCGA-G4-6588-01 8 28574985 28574985 T - EXTL3 Frame_Shift_Del p.Y472Tfs*37 0.28 TCGA-G4-6588-01 8 28600705 28600705 C A EXTL3 Missense_Mutation p.H842N 0.27 deleterious(0) possibly_damaging(0.809) TCGA-G4-6588-01 8 29033645 29033645 A G KIF13B Silent p.A295A 0.22 TCGA-G4-6588-01 8 29195943 29195943 C T DUSP4 Missense_Mutation p.A219T 0.34 tolerated(0.7) benign(0.007) TCGA-G4-6588-01 8 2964047 2964047 T C CSMD1 Intron 0.32 TCGA-G4-6588-01 8 29989796 29989796 G T MBOAT4 Missense_Mutation p.A324D 0.40 tolerated(0.34) benign(0.025) TCGA-G4-6588-01 8 30889671 30889671 C A PURG Missense_Mutation p.G210C 0.33 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-G4-6588-01 8 3326277 3326277 C T CSMD1 Silent p.S506S 0.36 TCGA-G4-6588-01 8 33319030 33319030 A G FUT10 5'UTR 0.22 TCGA-G4-6588-01 8 37702454 37702454 C T BRF2 Missense_Mutation p.V272M 0.13 tolerated(0.06) benign(0.14) TCGA-G4-6588-01 8 37985929 37985929 A G ASH2L Missense_Mutation p.E429G 0.25 deleterious(0.01) benign(0.329) TCGA-G4-6588-01 8 38644990 38644990 C A TACC1 5'UTR 0.41 TCGA-G4-6588-01 8 38697819 38697819 G A TACC1 Intron 0.31 TCGA-G4-6588-01 8 38869201 38869201 G T ADAM9 Nonsense_Mutation p.G74* 0.28 TCGA-G4-6588-01 8 39644502 39644502 A G ADAM2 Silent p.G294G 0.10 TCGA-G4-6588-01 8 39646187 39646187 C T ADAM2 Splice_Site p.X214_splice 0.27 TCGA-G4-6588-01 8 41478590 41478590 G C AGPAT6 3'UTR 0.56 TCGA-G4-6588-01 8 41566383 41566383 C T ANK1 Silent p.T670T 0.10 TCGA-G4-6588-01 8 42958969 42958970 AG - POMK Frame_Shift_Del 0.28 TCGA-G4-6588-01 8 43025821 43025821 G A HGSNAT Missense_Mutation p.V243M 0.43 deleterious(0) possibly_damaging(0.843) TCGA-G4-6588-01 8 48701506 48701507 - T PRKDC Frame_Shift_Ins p.A3621Gfs*8 0.24 TCGA-G4-6588-01 8 54792097 54792097 C - RGS20 Frame_Shift_Del p.H151Ifs*3 0.37 TCGA-G4-6588-01 8 59059102 59059102 G A FAM110B Missense_Mutation p.A105T 0.32 tolerated(0.41) benign(0.003) TCGA-G4-6588-01 8 61496778 61496778 A G RAB2A Silent p.E66E 0.31 TCGA-G4-6588-01 8 61766057 61766057 A G CHD7 Missense_Mutation p.E2258G 0.32 benign(0.444) TCGA-G4-6588-01 8 67341501 67341501 C - RRS1 Frame_Shift_Del p.P47Rfs*42 0.29 TCGA-G4-6588-01 8 67926821 67926821 G A PPP1R42 Missense_Mutation p.L46F 0.24 tolerated(0.12) benign(0.159) TCGA-G4-6588-01 8 71041215 71041215 T C NCOA2 Missense_Mutation p.S1109G 0.39 tolerated(1) benign(0.009) TCGA-G4-6588-01 8 72127881 72127881 C T EYA1 Silent p.L481L 0.33 TCGA-G4-6588-01 8 72958792 72958792 T - TRPA1 Frame_Shift_Del p.T673Hfs*23 0.25 TCGA-G4-6588-01 8 7718228 7718228 T - SPAG11A Frame_Shift_Del p.F94Sfs*63 0.26 TCGA-G4-6588-01 8 77617695 77617695 G A ZFHX4 Missense_Mutation p.G458R 0.32 benign(0.086) TCGA-G4-6588-01 8 81411802 81411802 A G ZBTB10 Missense_Mutation p.Q349R 0.22 deleterious(0.04) possibly_damaging(0.517) TCGA-G4-6588-01 8 8234932 8234932 G A SGK223 Silent p.S329S 0.36 TCGA-G4-6588-01 8 82586098 82586098 T C IMPA1 Silent p.K204K 0.13 TCGA-G4-6588-01 8 8643437 8643437 C T MFHAS1 3'UTR 0.33 TCGA-G4-6588-01 8 88884173 88884173 T - DCAF4L2 3'UTR 0.24 TCGA-G4-6588-01 8 94821103 94821103 C T TMEM67 Silent p.N825N 0.27 TCGA-G4-6588-01 8 95183084 95183084 C T CDH17 Missense_Mutation p.A305T 0.33 tolerated(0.52) benign(0.006) TCGA-G4-6588-01 8 9634174 9634174 T A TNKS Nonsense_Mutation p.Y1304* 0.23 TCGA-G4-6588-01 8 99440694 99440694 G A KCNS2 Missense_Mutation p.G163R 0.45 tolerated(0.17) benign(0) TCGA-G4-6588-01 9 100058092 100058092 C T CCDC180 Intron 0.32 TCGA-G4-6588-01 9 100417228 100417228 T C NCBP1 Splice_Site p.X412_splice 0.26 TCGA-G4-6588-01 9 100667157 100667157 C T C9orf156 Missense_Mutation p.R395H 0.38 deleterious(0) probably_damaging(0.991) TCGA-G4-6588-01 9 100899934 100899934 C T CORO2A Missense_Mutation p.G80R 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 9 101980791 101980791 A T ALG2 Missense_Mutation p.F226I 0.28 tolerated(0.35) benign(0.016) TCGA-G4-6588-01 9 103070942 103070942 C T TEX10 Missense_Mutation p.D769N 0.31 deleterious(0.02) probably_damaging(1) TCGA-G4-6588-01 9 104238597 104238597 T C TMEM246 Missense_Mutation p.M260V 0.30 tolerated(0.11) probably_damaging(0.916) TCGA-G4-6588-01 9 104499856 104499856 T C GRIN3A Missense_Mutation p.N136D 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-G4-6588-01 9 1056572 1056572 G T DMRT2 Missense_Mutation p.A329S 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G4-6588-01 9 107289022 107289022 T C OR13C4 Missense_Mutation p.T157A 0.29 tolerated(0.24) benign(0) TCGA-G4-6588-01 9 107618181 107618181 G A ABCA1 Intron 0.30 TCGA-G4-6588-01 9 111656286 111656286 G A IKBKAP Missense_Mutation p.R933W 0.34 deleterious(0) probably_damaging(0.983) TCGA-G4-6588-01 9 114359622 114359622 A G PTGR1 Silent p.A27A 0.26 TCGA-G4-6588-01 9 115408037 115408037 G A KIAA1958 Missense_Mutation p.A427T 0.29 deleterious(0.04) possibly_damaging(0.897) TCGA-G4-6588-01 9 115652694 115652694 G - SLC46A2 Frame_Shift_Del p.L90Cfs*53 0.25 TCGA-G4-6588-01 9 115805857 115805857 T G ZFP37 Missense_Mutation p.K347N 0.36 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 9 115941002 115941002 T - FKBP15 Frame_Shift_Del p.K665Rfs*9 0.23 TCGA-G4-6588-01 9 116186457 116186457 G A C9orf43 Missense_Mutation p.G223D 0.33 tolerated(1) benign(0.001) TCGA-G4-6588-01 9 116186598 116186598 T C C9orf43 Splice_Site p.X269_splice 0.24 TCGA-G4-6588-01 9 116279901 116279901 C T RGS3 Silent p.A585A 0.34 TCGA-G4-6588-01 9 116854276 116854276 C A KIF12 Silent p.G469G 0.32 TCGA-G4-6588-01 9 116858733 116858733 G T KIF12 Silent p.A86A 0.14 TCGA-G4-6588-01 9 117085694 117092465 9:117085694-117092465 - ORM2 large deletion 0.24 TCGA-G4-6588-01 9 117788884 117788884 T C TNC Missense_Mutation p.Y2087C 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 9 117825248 117825248 G A TNC Silent p.H1327H 0.26 TCGA-G4-6588-01 9 118141 118141 G A FOXD4 5'UTR 0.11 TCGA-G4-6588-01 9 119976715 119976715 C T ASTN2 Missense_Mutation p.E313K 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6588-01 9 121976176 121976176 G A BRINP1 Intron 0.23 TCGA-G4-6588-01 9 124584726 124584726 G A TTLL11 3'UTR 0.37 TCGA-G4-6588-01 9 124976628 124976628 C T LHX6 Silent p.S239S 0.35 TCGA-G4-6588-01 9 126133395 126133395 C T CRB2 Silent p.A658A 0.37 TCGA-G4-6588-01 9 126144783 126144783 G - DENND1A Frame_Shift_Del p.P653Qfs*29 0.34 TCGA-G4-6588-01 9 127620219 127620219 C T RPL35 Missense_Mutation p.R117Q 0.32 deleterious(0.04) benign(0.036) TCGA-G4-6588-01 9 127996085 127996086 CT - RABEPK Frame_Shift_Del p.L317Hfs*5 0.25 TCGA-G4-6588-01 9 128064626 128064627 - T GAPVD1 Frame_Shift_Ins p.S186Ffs*2 0.26 TCGA-G4-6588-01 9 130869549 130869549 G A SLC25A25 Silent p.E446E 0.07 TCGA-G4-6588-01 9 130928629 130928629 G A CIZ1 Silent p.C848C 0.27 TCGA-G4-6588-01 9 131150102 131150102 C A URM1 Silent p.I38I 0.36 TCGA-G4-6588-01 9 131395091 131395091 G T SPTAN1 Missense_Mutation p.G2389C 0.34 deleterious(0) possibly_damaging(0.818) TCGA-G4-6588-01 9 131395686 131395686 C T SPTAN1 3'UTR 0.31 TCGA-G4-6588-01 9 131502343 131502343 C T ZER1 Missense_Mutation p.V637I 0.33 tolerated(0.22) probably_damaging(0.951) TCGA-G4-6588-01 9 131583067 131583067 G A ENDOG Missense_Mutation p.R184H 0.27 deleterious(0) probably_damaging(0.993) TCGA-G4-6588-01 9 131775293 131775293 C T SH3GLB2 Intron 0.22 TCGA-G4-6588-01 9 131812137 131812137 G A FAM73B Silent p.K190K 0.31 TCGA-G4-6588-01 9 13193284 13193284 T C MPDZ Missense_Mutation p.N562S 0.36 tolerated(0.92) benign(0.007) TCGA-G4-6588-01 9 132571759 132571759 T C TOR1B Missense_Mutation p.I303T 0.30 tolerated(0.21) benign(0.004) TCGA-G4-6588-01 9 133294459 133294459 G A HMCN2 Intron 0.32 TCGA-G4-6588-01 9 133750298 133750298 G A ABL1 Missense_Mutation p.V396M 0.31 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 9 133945210 133945210 G A LAMC3 Silent p.P1014P 0.36 TCGA-G4-6588-01 9 134073008 134073008 C - NUP214 Frame_Shift_Del p.P1378Rfs*3 0.32 TCGA-G4-6588-01 9 134349012 134349012 C A PRRC2B Missense_Mutation p.P742H 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-G4-6588-01 9 134350603 134350603 C A PRRC2B Silent p.A1029A 0.30 TCGA-G4-6588-01 9 134477515 134477515 C T RAPGEF1 Missense_Mutation p.G644R 0.46 tolerated(0.39) benign(0.019) TCGA-G4-6588-01 9 135042197 135042197 C T NTNG2 5'UTR 0.10 TCGA-G4-6588-01 9 135117321 135117321 C T NTNG2 Silent p.N472N 0.50 TCGA-G4-6588-01 9 135507466 135507466 G A DDX31 Missense_Mutation p.R590W 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 9 135919245 135919245 C - GTF3C5 Frame_Shift_Del p.P170Hfs*35 0.31 TCGA-G4-6588-01 9 135985847 135985847 A G RALGDS Silent p.Y108Y 0.33 TCGA-G4-6588-01 9 136313731 136313731 C A ADAMTS13 Missense_Mutation p.L915M 0.36 deleterious(0.02) probably_damaging(0.954) TCGA-G4-6588-01 9 136412260 136412260 G A ADAMTSL2 Silent p.R288R 0.42 TCGA-G4-6588-01 9 136573487 136573487 G A SARDH Silent p.Y464Y 0.31 TCGA-G4-6588-01 9 138011806 138011806 G A OLFM1 Missense_Mutation p.V396I 0.37 tolerated(0.23) possibly_damaging(0.751) TCGA-G4-6588-01 9 138378942 138378942 C - PPP1R26 Frame_Shift_Del p.T864Pfs*90 0.29 TCGA-G4-6588-01 9 138395244 138395244 G A MRPS2 Intron 0.38 TCGA-G4-6588-01 9 138439062 138439062 G A OBP2A Missense_Mutation p.R82Q 0.23 tolerated(1) benign(0.002) TCGA-G4-6588-01 9 138657488 138657488 C A KCNT1 Missense_Mutation p.L407M 0.38 deleterious(0) probably_damaging(0.991) TCGA-G4-6588-01 9 138845575 138845575 C T UBAC1 Missense_Mutation p.R95H 0.35 deleterious(0) probably_damaging(0.983) TCGA-G4-6588-01 9 138908170 138908170 C T NACC2 Missense_Mutation p.R331H 0.36 deleterious(0) probably_damaging(0.995) TCGA-G4-6588-01 9 139379606 139379606 C G C9orf163 3'UTR 0.36 TCGA-G4-6588-01 9 139395154 139395154 G A NOTCH1 Silent p.G1928G 0.39 TCGA-G4-6588-01 9 139401168 139401168 C T NOTCH1 Missense_Mutation p.G1301R 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 9 139617684 139617684 C T FAM69B Silent p.L252L 0.50 TCGA-G4-6588-01 9 139732025 139732025 C T RABL6 Missense_Mutation p.A347V 0.36 tolerated(0.36) benign(0.004) TCGA-G4-6588-01 9 139752143 139752143 G A MAMDC4 Missense_Mutation p.A787T 0.27 tolerated(0.12) possibly_damaging(0.537) TCGA-G4-6588-01 9 140001816 140001816 C T MAN1B1 Missense_Mutation p.R561W 0.27 tolerated(0.13) benign(0.067) TCGA-G4-6588-01 9 140058049 140058049 C T GRIN1 Missense_Mutation p.T812M 0.45 tolerated(0.08) probably_damaging(0.937) TCGA-G4-6588-01 9 140058482 140058482 C T GRIN1 Intron 0.55 TCGA-G4-6588-01 9 140061921 140061921 G A GRIN1 Intron 0.28 TCGA-G4-6588-01 9 140166958 140166958 G A NELFB Splice_Site p.X496_splice 0.28 TCGA-G4-6588-01 9 140267461 140267462 - G EXD3 Frame_Shift_Ins p.S120Qfs*52 0.24 TCGA-G4-6588-01 9 140352290 140352291 - G NSMF Frame_Shift_Ins p.Q66Pfs*25 0.26 TCGA-G4-6588-01 9 140357887 140357887 C - PNPLA7 Frame_Shift_Del p.G1108Afs*19 0.25 TCGA-G4-6588-01 9 15047895 15047895 A G RP11-54D18.3 Splice_Site 0.28 TCGA-G4-6588-01 9 15451334 15451334 C G SNAPC3 Missense_Mutation p.A250G 0.15 tolerated(0.12) probably_damaging(0.956) TCGA-G4-6588-01 9 175745 175745 T C CBWD1 Missense_Mutation p.E65G 0.32 deleterious(0) probably_damaging(0.993) TCGA-G4-6588-01 9 178919 178919 C A CBWD1 Missense_Mutation p.E17D 0.37 tolerated(0.6) benign(0.034) TCGA-G4-6588-01 9 19358081 19358081 C T DENND4C Nonsense_Mutation p.Q1646* 0.30 TCGA-G4-6588-01 9 19376572 19376572 T C RPS6 Missense_Mutation p.I192V 0.31 tolerated(0.13) benign(0.031) TCGA-G4-6588-01 9 21967317 21967317 G A C9orf53 Missense_Mutation p.R40H 0.28 unknown(0) TCGA-G4-6588-01 9 22005964 22005964 T G CDKN2B 3'UTR 0.19 TCGA-G4-6588-01 9 25678387 25678387 G A TUSC1 5'UTR 0.19 TCGA-G4-6588-01 9 2820069 2820069 C T KIAA0020 Silent p.A406A 0.32 TCGA-G4-6588-01 9 2827092 2827092 G T KIAA0020 Missense_Mutation p.A339E 0.18 deleterious(0) probably_damaging(0.944) TCGA-G4-6588-01 9 2831296 2831296 A G KIAA0020 Missense_Mutation p.Y189H 0.17 tolerated(0.15) benign(0.008) TCGA-G4-6588-01 9 32635639 32635639 C T TAF1L 5'UTR 0.32 TCGA-G4-6588-01 9 33034220 33034220 A G DNAJA1 Missense_Mutation p.K217R 0.19 tolerated(0.3) benign(0.06) TCGA-G4-6588-01 9 33464082 33464082 G - NOL6 Frame_Shift_Del p.Q953Kfs*32 0.29 TCGA-G4-6588-01 9 34398267 34398267 A - FAM219A 3'UTR 0.40 TCGA-G4-6588-01 9 34833486 34833486 T C FAM205B RNA 0.17 TCGA-G4-6588-01 9 35093497 35093497 C A PIGO Missense_Mutation p.G287V 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 9 35608960 35608960 C - TESK1 Frame_Shift_Del p.N370Tfs*6 0.40 TCGA-G4-6588-01 9 35710997 35710997 G A TLN1 Missense_Mutation p.R1368W 0.37 deleterious(0.02) probably_damaging(0.991) TCGA-G4-6588-01 9 35711721 35711721 A T TLN1 Missense_Mutation p.N1250K 0.36 deleterious(0) probably_damaging(0.992) TCGA-G4-6588-01 9 35846937 35846937 G A TMEM8B Missense_Mutation p.R255Q 0.35 tolerated(0.29) possibly_damaging(0.881) TCGA-G4-6588-01 9 35870259 35870259 G A OR13J1 Missense_Mutation p.A47V 0.25 tolerated(0.73) benign(0.01) TCGA-G4-6588-01 9 37495896 37495896 C A POLR1E Missense_Mutation p.P222H 0.35 deleterious(0) possibly_damaging(0.824) TCGA-G4-6588-01 9 3829368 3829368 C T GLIS3 Missense_Mutation p.M866I 0.23 tolerated(0.25) benign(0.009) TCGA-G4-6588-01 9 38395797 38395797 C A ALDH1B1 Missense_Mutation p.R18S 0.38 tolerated(0.66) benign(0) TCGA-G4-6588-01 9 39099961 39099961 C A CNTNAP3 Missense_Mutation p.G981V 0.23 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 9 4117864 4117864 C T GLIS3 Nonsense_Mutation p.W538* 0.34 TCGA-G4-6588-01 9 43625396 43625396 C A SPATA31A6 Missense_Mutation p.R1097S 0.31 tolerated(1) benign(0.001) TCGA-G4-6588-01 9 4564342 4564342 A G SLC1A1 Splice_Site p.X109_splice 0.14 TCGA-G4-6588-01 9 4685077 4685077 A G CDC37L1 Silent p.R111R 0.22 TCGA-G4-6588-01 9 6984198 6984198 C A KDM4C Missense_Mutation p.P383H 0.20 tolerated(0.58) benign(0.002) TCGA-G4-6588-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.10 deleterious(0.01) possibly_damaging(0.573) TCGA-G4-6588-01 9 73398889 73398889 T - TRPM3 Intron 0.33 TCGA-G4-6588-01 9 77257366 77257366 A T RORB Missense_Mutation p.D91V 0.20 deleterious(0) probably_damaging(0.98) TCGA-G4-6588-01 9 77457237 77457237 C T TRPM6 Missense_Mutation p.G59R 0.31 tolerated(0.37) benign(0.005) TCGA-G4-6588-01 9 78773907 78773907 G A PCSK5 Missense_Mutation p.R480H 0.27 tolerated(0.26) probably_damaging(0.97) TCGA-G4-6588-01 9 79117443 79117443 C T GCNT1 Missense_Mutation p.A49V 0.28 tolerated(0.43) benign(0) TCGA-G4-6588-01 9 79634637 79634637 G A FOXB2 Missense_Mutation p.A23T 0.29 tolerated(0.23) unknown(0) TCGA-G4-6588-01 9 79840892 79840892 G A VPS13A Silent p.T404T 0.34 TCGA-G4-6588-01 9 82335073 82335073 G A TLE4 Missense_Mutation p.R568H 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6588-01 9 8375960 8375960 G A PTPRD Missense_Mutation p.A1546V 0.21 deleterious(0) probably_damaging(0.991) TCGA-G4-6588-01 9 84226773 84226773 C T TLE1 Missense_Mutation p.A389T 0.25 tolerated(0.08) benign(0.064) TCGA-G4-6588-01 9 86571298 86571298 C T C9orf64 Missense_Mutation p.A40T 0.31 tolerated(0.45) benign(0.001) TCGA-G4-6588-01 9 86587010 86587010 C T HNRNPK Missense_Mutation p.R247H 0.30 tolerated(0.59) benign(0.005) TCGA-G4-6588-01 9 86617347 86617347 T C RMI1 Silent p.I482I 0.42 TCGA-G4-6588-01 9 89763769 89763769 G T C9orf170 Nonsense_Mutation p.G42* 0.30 TCGA-G4-6588-01 9 90255223 90255223 G A DAPK1 Missense_Mutation p.A214T 0.21 deleterious(0.01) probably_damaging(0.953) TCGA-G4-6588-01 9 90343553 90343553 G T CTSL Missense_Mutation p.Q150H 0.24 deleterious(0.01) possibly_damaging(0.771) TCGA-G4-6588-01 9 90396113 90396113 G A CTSL3P RNA 0.23 TCGA-G4-6588-01 9 91961856 91961856 A C SECISBP2 Missense_Mutation p.S499R 0.23 tolerated(0.05) benign(0.365) TCGA-G4-6588-01 9 95072839 95072839 T C NOL8 Missense_Mutation p.Q864R 0.36 deleterious(0.04) benign(0.062) TCGA-G4-6588-01 9 95177416 95177416 T C OMD 3'UTR 0.29 TCGA-G4-6588-01 9 96291814 96291814 G A FAM120A Silent p.R562R 0.28 TCGA-G4-6588-01 9 96860178 96860178 C T PTPDC1 Missense_Mutation p.R442W 0.29 deleterious(0) possibly_damaging(0.828) TCGA-G4-6588-01 9 97177504 97177504 C T HIATL1 Missense_Mutation p.A58V 0.30 deleterious(0) probably_damaging(0.96) TCGA-G4-6588-01 9 97209197 97209197 T - HIATL1 Frame_Shift_Del p.L277Sfs*7 0.08 TCGA-G4-6588-01 9 99064436 99064436 G A HSD17B3 5'Flank 0.25 TCGA-G4-6588-01 9 99086404 99086404 G A SLC35D2 Missense_Mutation p.A267V 0.20 deleterious(0) probably_damaging(0.964) TCGA-G4-6588-01 X 10085223 10085223 G T WWC3 Missense_Mutation p.S375I 0.25 deleterious(0) probably_damaging(0.991) TCGA-G4-6588-01 X 10166077 10166077 T C CLCN4 Silent p.Y177Y 0.29 TCGA-G4-6588-01 X 101912485 101912486 - T GPRASP1 Frame_Shift_Ins p.L1217Ffs*23 0.20 TCGA-G4-6588-01 X 101971137 101971137 C T GPRASP2 Missense_Mutation p.A447V 0.24 deleterious(0.02) possibly_damaging(0.821) TCGA-G4-6588-01 X 102471704 102471704 T - BEX4 3'UTR 0.29 TCGA-G4-6588-01 X 102864834 102864834 A - TCEAL3 3'UTR 0.22 TCGA-G4-6588-01 X 103041545 103041545 G A PLP1 Missense_Mutation p.A115T 0.31 tolerated(0.12) possibly_damaging(0.553) TCGA-G4-6588-01 X 103294870 103294870 C T H2BFM Silent p.R109R 0.14 TCGA-G4-6588-01 X 105970253 105970253 G - RNF128 Frame_Shift_Del p.A39Lfs*20 0.37 TCGA-G4-6588-01 X 106841112 106841112 C T FRMPD3 Missense_Mutation p.A701V 0.28 deleterious(0) probably_damaging(0.986) TCGA-G4-6588-01 X 106845243 106845243 G A FRMPD3 Missense_Mutation p.R1358K 0.19 tolerated_low_confidence(0.24) benign(0.01) TCGA-G4-6588-01 X 106846480 106846480 G A FRMPD3 Silent p.Q1770Q 0.33 TCGA-G4-6588-01 X 109561350 109561350 C T AMMECR1 5'UTR 0.50 TCGA-G4-6588-01 X 110406223 110406223 T A PAK3 Missense_Mutation p.D219E 0.07 tolerated(0.78) benign(0.028) TCGA-G4-6588-01 X 110961351 110961351 G A ALG13 Missense_Mutation p.E367K 0.31 deleterious(0) probably_damaging(0.986) TCGA-G4-6588-01 X 111003074 111003074 G A ALG13 Silent p.P1087P 0.17 TCGA-G4-6588-01 X 114249067 114249067 T C IL13RA2 Missense_Mutation p.H106R 0.29 tolerated(0.41) benign(0.005) TCGA-G4-6588-01 X 117742090 117742090 A G DOCK11 Missense_Mutation p.R913G 0.25 deleterious(0.04) possibly_damaging(0.841) TCGA-G4-6588-01 X 117959705 117959705 T C ZCCHC12 Silent p.A166A 0.34 TCGA-G4-6588-01 X 117960917 117960918 AT - ZCCHC12 3'UTR 0.33 TCGA-G4-6588-01 X 118723398 118723398 T - NKRF Frame_Shift_Del p.R679Dfs*7 0.21 TCGA-G4-6588-01 X 118753983 118753983 C T SEPT6 Intron 0.30 TCGA-G4-6588-01 X 118923899 118923899 T C RPL39 Missense_Mutation p.I27V 0.43 tolerated(0.18) benign(0.014) TCGA-G4-6588-01 X 119660493 119660493 C T CUL4B 3'Flank 0.40 TCGA-G4-6588-01 X 119678361 119678361 A T CUL4B Missense_Mutation p.L371H 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 X 119694090 119694090 T C CUL4B Missense_Mutation p.Q153R 0.13 tolerated(0.11) benign(0.006) TCGA-G4-6588-01 X 122318354 122318354 G A GRIA3 5'UTR 0.35 TCGA-G4-6588-01 X 123020048 123020048 T C XIAP Missense_Mutation p.L179P 0.28 deleterious(0) probably_damaging(0.973) TCGA-G4-6588-01 X 123195634 123195634 G A STAG2 Silent p.R516R 0.32 TCGA-G4-6588-01 X 123514499 123514499 G A TENM1 Missense_Mutation p.R2696W 0.26 deleterious(0) possibly_damaging(0.753) TCGA-G4-6588-01 X 128781706 128781706 G A APLN 3'UTR 0.32 TCGA-G4-6588-01 X 129060229 129060229 G A UTP14A Missense_Mutation p.A653T 0.17 tolerated(0.11) benign(0.02) TCGA-G4-6588-01 X 129147711 129147712 - C BCORL1 Frame_Shift_Ins p.S324Ffs*96 0.32 TCGA-G4-6588-01 X 129189868 129189868 G A BCORL1 Silent p.R1631R 0.33 TCGA-G4-6588-01 X 129203319 129203319 G A ELF4 Silent p.L381L 0.29 TCGA-G4-6588-01 X 12939733 12939733 T C TLR8 Silent p.F858F 0.28 TCGA-G4-6588-01 X 12939844 12939844 C T TLR8 Silent p.D895D 0.32 TCGA-G4-6588-01 X 129518963 129518963 C T GPR119 Silent p.G153G 0.33 TCGA-G4-6588-01 X 129629755 129629755 A C RP1-274L7.1 Intron 0.30 TCGA-G4-6588-01 X 130408155 130408155 T C IGSF1 Silent p.V1264V 0.31 TCGA-G4-6588-01 X 131212608 131212608 G A FRMD7 Silent p.P479P 0.38 TCGA-G4-6588-01 X 132351291 132351291 C T TFDP3 Missense_Mutation p.A333T 0.29 deleterious(0.01) benign(0.189) TCGA-G4-6588-01 X 133915875 133915875 G A FAM122B Missense_Mutation p.A211V 0.30 tolerated(0.08) benign(0.145) TCGA-G4-6588-01 X 134494589 134494589 C A ZNF449 Missense_Mutation p.T382N 0.30 tolerated(0.18) possibly_damaging(0.884) TCGA-G4-6588-01 X 134494862 134494862 G A ZNF449 Missense_Mutation p.R473K 0.23 tolerated(0.81) possibly_damaging(0.906) TCGA-G4-6588-01 X 135570596 135570596 A G BRS3 Missense_Mutation p.Y108C 0.34 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 X 135593638 135593638 T C HTATSF1 Silent p.G578G 0.30 TCGA-G4-6588-01 X 13682012 13682012 C - TCEANC 3'UTR 0.23 TCGA-G4-6588-01 X 137715084 137715084 G A FGF13 Missense_Mutation p.T232I 0.12 deleterious_low_confidence(0) possibly_damaging(0.542) TCGA-G4-6588-01 X 138699728 138699728 T C MCF2 Missense_Mutation p.K375E 0.33 tolerated(0.1) benign(0.22) TCGA-G4-6588-01 X 138850533 138850533 T C ATP11C Missense_Mutation p.I762M 0.34 tolerated(0.08) benign(0.196) TCGA-G4-6588-01 X 1404703 1404703 A G CSF2RA Missense_Mutation p.N37D 0.27 deleterious(0.02) possibly_damaging(0.905) TCGA-G4-6588-01 X 141291292 141291292 G T MAGEC2 Missense_Mutation p.P161H 0.27 deleterious(0) probably_damaging(0.99) TCGA-G4-6588-01 X 1428496 1428496 G - CSF2RA 3'UTR 0.11 TCGA-G4-6588-01 X 142968322 142968322 T C UBE2NL 3'UTR 0.36 TCGA-G4-6588-01 X 144909160 144909160 T G TMEM257 5'UTR 0.28 TCGA-G4-6588-01 X 148798306 148798306 G A MAGEA11 Missense_Mutation p.G387D 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 X 149638666 149638666 C T MAMLD1 Missense_Mutation p.P249L 0.27 deleterious(0) possibly_damaging(0.453) TCGA-G4-6588-01 X 1508131 1508131 T C SLC25A6 Intron 0.22 TCGA-G4-6588-01 X 151092582 151092582 C T MAGEA4 Missense_Mutation p.P149L 0.24 tolerated(0.07) possibly_damaging(0.693) TCGA-G4-6588-01 X 151996288 151996288 G - CETN2 3'UTR 0.20 TCGA-G4-6588-01 X 152614553 152614553 C T ZNF275 3'UTR 0.37 TCGA-G4-6588-01 X 152615383 152615383 G T ZNF275 3'UTR 0.29 TCGA-G4-6588-01 X 152914788 152914788 G A DUSP9 Missense_Mutation p.V159M 0.32 tolerated(0.06) probably_damaging(0.983) TCGA-G4-6588-01 X 152991511 152991511 A G ABCD1 Missense_Mutation p.K264E 0.39 deleterious(0.04) possibly_damaging(0.686) TCGA-G4-6588-01 X 153150855 153150855 C T LCA10 Missense_Mutation p.R200W 0.29 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-G4-6588-01 X 153224797 153224797 C T HCFC1 Silent p.Q530Q 0.21 TCGA-G4-6588-01 X 153580608 153580608 C - FLNA Frame_Shift_Del p.G2237Efs*109 0.28 TCGA-G4-6588-01 X 153583056 153583056 C T FLNA Silent p.S1747S 0.30 TCGA-G4-6588-01 X 153628249 153628249 T C RPL10 Missense_Mutation p.I99T 0.35 deleterious(0) probably_damaging(0.95) TCGA-G4-6588-01 X 153715809 153715809 T C SLC10A3 3'UTR 0.28 TCGA-G4-6588-01 X 1537906 1537906 C T ASMTL Silent p.L449L 0.10 TCGA-G4-6588-01 X 153881578 153881578 G A CTAG2 Missense_Mutation p.A71V 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-G4-6588-01 X 154033614 154033614 C - MPP1 Frame_Shift_Del p.G12Afs*29 0.34 TCGA-G4-6588-01 X 154113388 154113388 C A H2AFB1 Missense_Mutation p.R22S 0.21 deleterious(0.02) probably_damaging(0.965) TCGA-G4-6588-01 X 154176135 154176135 G A F8 Missense_Mutation p.H651Y 0.25 deleterious(0.01) benign(0.03) TCGA-G4-6588-01 X 154182177 154182177 G A F8 Silent p.N631N 0.26 TCGA-G4-6588-01 X 154444744 154444744 C T VBP1 5'UTR 0.19 TCGA-G4-6588-01 X 1546760 1546760 C T ASMTL Missense_Mutation p.S255N 0.18 tolerated(0.36) benign(0.006) TCGA-G4-6588-01 X 155005073 155005073 T - SPRY3 3'UTR 0.29 TCGA-G4-6588-01 X 155255065 155255065 A G WASH6P RNA 0.21 TCGA-G4-6588-01 X 1571663 1571663 C T ASMTL Missense_Mutation p.R24H 0.32 deleterious(0) possibly_damaging(0.64) TCGA-G4-6588-01 X 16701318 16701318 C T CTPS2 Missense_Mutation p.A302T 0.08 deleterious(0.01) possibly_damaging(0.736) TCGA-G4-6588-01 X 18259172 18259172 C T SCML2 3'UTR 0.31 TCGA-G4-6588-01 X 18802074 18802074 G A PPEF1 Missense_Mutation p.G274S 0.35 deleterious(0.01) possibly_damaging(0.907) TCGA-G4-6588-01 X 18924631 18924631 G A PHKA2 Missense_Mutation p.R930W 0.29 deleterious(0) possibly_damaging(0.907) TCGA-G4-6588-01 X 19025412 19025412 T G GPR64 Missense_Mutation p.T544P 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-G4-6588-01 X 19390821 19390821 A G MAP3K15 Missense_Mutation p.W1020R 0.28 tolerated(0.54) benign(0.003) TCGA-G4-6588-01 X 216011 216011 T C PLCXD1 3'UTR 0.20 TCGA-G4-6588-01 X 22095741 22095741 G A PHEX Missense_Mutation p.R195H 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6588-01 X 229446 229446 C T GTPBP6 Silent p.G72G 0.08 TCGA-G4-6588-01 X 2748148 2748148 G A GYG2 5'UTR 0.36 TCGA-G4-6588-01 X 30327300 30327300 C G NR0B1 Missense_Mutation p.A61P 0.29 deleterious_low_confidence(0.04) benign(0.005) TCGA-G4-6588-01 X 3239927 3239927 T C MXRA5 Missense_Mutation p.N1267D 0.35 tolerated(0.91) benign(0.045) TCGA-G4-6588-01 X 32459413 32459413 G A DMD Missense_Mutation p.H1269Y 0.39 possibly_damaging(0.677) TCGA-G4-6588-01 X 32509516 32509516 C T DMD Missense_Mutation p.A834T 0.31 benign(0) TCGA-G4-6588-01 X 32535992 32535992 T - DMD Intron 0.20 TCGA-G4-6588-01 X 35989796 35989796 G T CXorf22 Missense_Mutation p.E688D 0.22 tolerated(0.09) benign(0.081) TCGA-G4-6588-01 X 36162931 36162931 A G CHDC2 3'UTR 0.36 TCGA-G4-6588-01 X 37028265 37028265 C - FAM47C Frame_Shift_Del p.P596Rfs*229 0.21 TCGA-G4-6588-01 X 37660572 37660572 C T CYBB Nonsense_Mutation p.R290* 0.22 TCGA-G4-6588-01 X 39932085 39932085 G - BCOR Frame_Shift_Del p.K839Sfs*17 0.33 TCGA-G4-6588-01 X 39934371 39934371 G A BCOR Silent p.G76G 0.40 TCGA-G4-6588-01 X 41069810 41069810 A G USP9X Silent p.E1688E 0.36 TCGA-G4-6588-01 X 41075428 41075428 G A USP9X Missense_Mutation p.V1870I 0.14 deleterious(0) probably_damaging(0.981) TCGA-G4-6588-01 X 41084097 41084097 A G USP9X Missense_Mutation p.Y2285C 0.33 tolerated(0.06) probably_damaging(0.993) TCGA-G4-6588-01 X 41306963 41306963 G A NYX 5'UTR 0.32 TCGA-G4-6588-01 X 41333577 41333577 G A NYX Missense_Mutation p.A291T 0.46 tolerated(0.43) benign(0.004) TCGA-G4-6588-01 X 41393970 41393970 T C CASK Missense_Mutation p.Y764C 0.36 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 X 46913687 46913687 A - JADE3 Frame_Shift_Del p.N368Tfs*58 0.27 TCGA-G4-6588-01 X 47307156 47307156 G A ZNF41 Silent p.A671A 0.31 TCGA-G4-6588-01 X 47485791 47485791 G A CFP Silent p.D356D 0.27 TCGA-G4-6588-01 X 47485892 47485892 C - CFP Frame_Shift_Del p.E323Sfs*10 0.27 TCGA-G4-6588-01 X 48791845 48791845 G A OTUD5 Silent p.D322D 0.30 TCGA-G4-6588-01 X 48887781 48887781 C - TFE3 Frame_Shift_Del p.G539Vfs*209 0.29 TCGA-G4-6588-01 X 49034397 49034397 G A PRICKLE3 Silent p.C300C 0.32 TCGA-G4-6588-01 X 49071546 49071546 C A CACNA1F Missense_Mutation p.Q1210H 0.39 deleterious(0) possibly_damaging(0.54) TCGA-G4-6588-01 X 49161349 49161349 G A GAGE10 Missense_Mutation p.R4Q 0.19 tolerated(0.3) probably_damaging(0.999) TCGA-G4-6588-01 X 49646534 49646534 G - USP27X 3'UTR 0.45 TCGA-G4-6588-01 X 49851437 49851437 G A CLCN5 Silent p.P489P 0.38 TCGA-G4-6588-01 X 50127253 50127253 C T DGKK RNA 0.32 TCGA-G4-6588-01 X 53114951 53114951 C T TSPYL2 Silent p.T459T 0.27 TCGA-G4-6588-01 X 53224536 53224536 C A KDM5C Silent p.R1059R 0.27 TCGA-G4-6588-01 X 53277365 53277365 C T IQSEC2 Missense_Mutation p.R838Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 X 53439145 53439145 T A SMC1A Missense_Mutation p.T305S 0.30 deleterious(0) benign(0.084) TCGA-G4-6588-01 X 54011472 54011472 C T PHF8 Missense_Mutation p.R809H 0.23 tolerated(0.11) benign(0.004) TCGA-G4-6588-01 X 54584908 54584908 C T GNL3L Missense_Mutation p.H496Y 0.34 tolerated(0.28) benign(0.002) TCGA-G4-6588-01 X 54956092 54956092 T G TRO Missense_Mutation p.F979V 0.36 deleterious(0) probably_damaging(0.937) TCGA-G4-6588-01 X 56259609 56259609 T C KLF8 5'UTR 0.14 TCGA-G4-6588-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.45 TCGA-G4-6588-01 X 57146136 57146136 T - SPIN2B 3'UTR 0.17 TCGA-G4-6588-01 X 57934694 57934694 T C ZXDA Missense_Mutation p.T721A 0.22 deleterious(0.02) benign(0.257) TCGA-G4-6588-01 X 62855171 62855171 A G ARHGEF9 3'UTR 0.29 TCGA-G4-6588-01 X 64719059 64719059 A G ZC3H12B Missense_Mutation p.E310G 0.31 deleterious(0) probably_damaging(0.991) TCGA-G4-6588-01 X 66765267 66765267 G T AR Missense_Mutation p.E93D 0.27 tolerated_low_confidence(0.09) benign(0.008) TCGA-G4-6588-01 X 66931463 66931463 T A AR Missense_Mutation p.L702H 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 X 68049609 68049609 C - EFNB1 5'UTR 0.32 TCGA-G4-6588-01 X 68383275 68383275 C A PJA1 5'UTR 0.29 TCGA-G4-6588-01 X 70350023 70350023 G - MED12 Frame_Shift_Del p.E1337Kfs*8 0.26 TCGA-G4-6588-01 X 70390050 70390050 C T NLGN3 3'UTR 0.47 TCGA-G4-6588-01 X 70825524 70825524 C T ACRC Missense_Mutation p.R471C 0.37 unknown(0) TCGA-G4-6588-01 X 71494534 71494534 G A RPS4X Intron 0.29 TCGA-G4-6588-01 X 7223116 7223116 A C STS Silent p.R330R 0.33 TCGA-G4-6588-01 X 75651144 75651144 G A MAGEE1 Missense_Mutation p.A941T 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-G4-6588-01 X 76937258 76937258 C T ATRX Missense_Mutation p.D1164N 0.31 probably_damaging(0.958) TCGA-G4-6588-01 X 77154993 77154993 A G COX7B 5'UTR 0.30 TCGA-G4-6588-01 X 77258637 77258637 A G ATP7A Missense_Mutation p.I537M 0.29 deleterious(0.02) benign(0.17) TCGA-G4-6588-01 X 80065022 80065022 G A BRWD3 5'UTR 0.32 TCGA-G4-6588-01 X 82764324 82764324 A - POU3F4 Frame_Shift_Del p.E333Rfs*4 0.25 TCGA-G4-6588-01 X 83128363 83128363 C G CYLC1 Missense_Mutation p.T216R 0.28 tolerated(0.65) possibly_damaging(0.702) TCGA-G4-6588-01 X 86069720 86069720 A C DACH2 Missense_Mutation p.K523Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-G4-6588-01 X 86773265 86773265 C T KLHL4 Silent p.R123R 0.34 TCGA-G4-6588-01 X 86887341 86887341 G A KLHL4 Missense_Mutation p.G486S 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6588-01 X 8768134 8768134 C - FAM9A Frame_Shift_Del p.A27Pfs*70 0.29 TCGA-G4-6588-01 X 90692559 90692559 G A PABPC5 3'UTR 0.22 TCGA-G4-6588-01 X 9863108 9863108 G A SHROOM2 Missense_Mutation p.C387Y 0.37 tolerated(1) benign(0.019) TCGA-G4-6588-01 X 99551632 99551632 C T PCDH19 Silent p.R1030R 0.27 TCGA-G4-6588-01 X 99662163 99662163 C T PCDH19 Missense_Mutation p.R478H 0.27 tolerated(0.75) benign(0.016) TCGA-G4-6588-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.36 TCGA-G4-6588-01 X 99942262 99942262 G A SYTL4 Intron 0.34 TCGA-G4-6625-01 10 134981058 134981058 C T KNDC1 Silent p.N92N 0.29 TCGA-G4-6625-01 10 135352496 135352496 G A CYP2E1 3'UTR 0.34 TCGA-G4-6625-01 10 37508805 37508805 A C ANKRD30A Missense_Mutation p.K1333Q 0.09 deleterious(0.01) possibly_damaging(0.788) TCGA-G4-6625-01 10 50121831 50121831 G A LRRC18 Missense_Mutation p.R124C 0.39 deleterious(0.01) benign(0.093) TCGA-G4-6625-01 10 75239117 75239117 G A PPP3CB Missense_Mutation p.R82W 0.23 deleterious(0.01) benign(0.062) TCGA-G4-6625-01 10 95892001 95892001 T C PLCE1 Missense_Mutation p.L426P 0.08 deleterious_low_confidence(0.01) benign(0.008) TCGA-G4-6625-01 11 117299307 117299307 C T DSCAML1 Missense_Mutation p.A2027T 0.34 tolerated_low_confidence(0.31) benign(0.085) TCGA-G4-6625-01 11 118223204 118223204 T A CD3G Splice_Site 0.28 TCGA-G4-6625-01 11 129754657 129754657 G A NFRKB Missense_Mutation p.T267M 0.24 tolerated(0.19) unknown(0) TCGA-G4-6625-01 11 131781340 131781340 G A NTM 5'Flank 0.45 TCGA-G4-6625-01 11 5080632 5080632 A C OR52E2 Missense_Mutation p.S76A 0.07 deleterious(0) possibly_damaging(0.754) TCGA-G4-6625-01 11 66807306 66807306 C T SYT12 Missense_Mutation p.R85W 0.21 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-G4-6625-01 11 71850508 71850508 G A FOLR3 Missense_Mutation p.G201S 0.32 deleterious(0.02) possibly_damaging(0.842) TCGA-G4-6625-01 11 88042421 88042421 G A CTSC Missense_Mutation p.S184F 0.12 deleterious(0.01) benign(0.152) TCGA-G4-6625-01 11 9861123 9861123 A G SBF2 Missense_Mutation p.I1126T 0.09 tolerated(0.36) benign(0.148) TCGA-G4-6625-01 12 118293265 118293265 G A KSR2 Missense_Mutation p.S147F 0.15 deleterious(0) possibly_damaging(0.596) TCGA-G4-6625-01 12 121622547 121622547 T C P2RX7 Missense_Mutation p.I577T 0.09 deleterious(0) probably_damaging(0.999) TCGA-G4-6625-01 12 21918866 21918866 G A KCNJ8 Nonsense_Mutation p.R356* 0.21 TCGA-G4-6625-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.21 deleterious(0.03) possibly_damaging(0.644) TCGA-G4-6625-01 12 45796951 45796951 C G ANO6 Missense_Mutation p.A591G 0.28 deleterious(0) probably_damaging(0.936) TCGA-G4-6625-01 12 57424015 57424015 T C MYO1A Missense_Mutation p.K857R 0.13 tolerated(0.28) benign(0.047) TCGA-G4-6625-01 12 6101131 6101131 G A VWF Missense_Mutation p.R2218W 0.11 deleterious(0) probably_damaging(0.965) TCGA-G4-6625-01 12 78400474 78400474 G C NAV3 Missense_Mutation p.E386Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-G4-6625-01 13 103384563 103384563 T A CCDC168 Missense_Mutation p.N1533Y 0.06 deleterious(0) unknown(0) TCGA-G4-6625-01 13 103385535 103385535 G A CCDC168 Nonsense_Mutation p.R1209* 0.41 TCGA-G4-6625-01 13 46937301 46937301 G A KIAA0226L Missense_Mutation p.H292Y 0.39 tolerated(1) benign(0) TCGA-G4-6625-01 13 53282679 53282679 G T LECT1 Missense_Mutation p.P261T 0.05 deleterious(0.01) probably_damaging(0.987) TCGA-G4-6625-01 14 23884982 23884982 G A MYH7 Silent p.I1671I 0.16 TCGA-G4-6625-01 14 64619367 64619367 C T SYNE2 Missense_Mutation p.P5242L 0.09 probably_damaging(0.999) TCGA-G4-6625-01 14 74196394 74196394 C G ELMSAN1 Missense_Mutation p.A682P 0.17 tolerated(0.15) probably_damaging(0.949) TCGA-G4-6625-01 14 94780857 94780857 G A SERPINA6 Silent p.N43N 0.20 TCGA-G4-6625-01 15 34113472 34113472 A C RYR3 Missense_Mutation p.E3606A 0.18 possibly_damaging(0.83) TCGA-G4-6625-01 15 75941814 75941814 G A SNX33 Missense_Mutation p.C124Y 0.34 tolerated(0.43) benign(0.259) TCGA-G4-6625-01 16 11771724 11771724 C T SNN 3'UTR 0.16 TCGA-G4-6625-01 16 1248689 1248689 G A CACNA1H Missense_Mutation p.V240I 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6625-01 16 27459892 27459892 A G IL21R Missense_Mutation p.E302G 0.25 deleterious(0.01) possibly_damaging(0.653) TCGA-G4-6625-01 16 3824694 3824694 C A CREBBP Missense_Mutation p.G720V 0.27 probably_damaging(0.996) TCGA-G4-6625-01 16 57059317 57059317 T C NLRC5 Silent p.S154S 0.13 TCGA-G4-6625-01 16 74640972 74640972 T C GLG1 Silent p.V7V 0.29 TCGA-G4-6625-01 16 843042 843042 G A CHTF18 Missense_Mutation p.R550Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6625-01 16 87677896 87677896 C T JPH3 Missense_Mutation p.R139C 0.20 deleterious(0) probably_damaging(0.997) TCGA-G4-6625-01 17 30527980 30527980 C T RHOT1 Missense_Mutation p.T369M 0.33 tolerated(0.17) benign(0.208) TCGA-G4-6625-01 17 36486013 36486013 A G GPR179 Missense_Mutation p.S1147P 0.17 deleterious(0.01) benign(0) TCGA-G4-6625-01 17 38907296 38907296 G A KRT25 Silent p.V289V 0.20 TCGA-G4-6625-01 17 45009484 45009484 A G GOSR2 Silent p.R85R 0.10 TCGA-G4-6625-01 17 5138023 5138023 T C SCIMP Intron 0.11 TCGA-G4-6625-01 17 53045803 53045803 G A COX11 Nonsense_Mutation p.Q69* 0.12 TCGA-G4-6625-01 17 56247439 56247439 G A OR4D2 Nonsense_Mutation p.W141* 0.15 TCGA-G4-6625-01 17 72368207 72368207 C T GPR142 Missense_Mutation p.A286V 0.11 deleterious(0.01) possibly_damaging(0.825) TCGA-G4-6625-01 17 74013991 74013991 A C EVPL Silent p.A513A 0.35 TCGA-G4-6625-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6625-01 17 77768947 77768947 G A CBX8 Silent p.S219S 0.11 TCGA-G4-6625-01 18 3742448 3742448 C A DLGAP1 Nonsense_Mutation p.E413* 0.15 TCGA-G4-6625-01 18 67834218 67834218 C T RTTN Missense_Mutation p.R580H 0.43 tolerated(0.18) benign(0.004) TCGA-G4-6625-01 19 14040412 14040412 C A CC2D1A Silent p.I883I 0.13 TCGA-G4-6625-01 19 19037180 19037180 C A DDX49 Missense_Mutation p.Q366K 0.24 tolerated(0.91) benign(0.004) TCGA-G4-6625-01 19 34833068 34833068 G A KIAA0355 Silent p.P743P 0.12 TCGA-G4-6625-01 19 35231975 35231975 C T ZNF181 Missense_Mutation p.T230I 0.08 tolerated(0.13) probably_damaging(0.986) TCGA-G4-6625-01 19 35617794 35617794 G A LGI4 Silent p.Y252Y 0.31 TCGA-G4-6625-01 19 36044034 36044034 G T ATP4A Missense_Mutation p.Q886K 0.32 deleterious(0) probably_damaging(0.986) TCGA-G4-6625-01 19 36486923 36486923 A C SDHAF1 3'UTR 0.15 TCGA-G4-6625-01 19 41630762 41630762 C T CYP2F1 Missense_Mutation p.P368L 0.17 deleterious(0) probably_damaging(0.927) TCGA-G4-6625-01 19 56703317 56703317 G C ZSCAN5B Missense_Mutation p.Q164E 0.23 tolerated(0.98) benign(0.254) TCGA-G4-6625-01 19 57646182 57646182 C T ZIM3 3'UTR 0.21 TCGA-G4-6625-01 19 57839812 57839812 C T ZNF543 Nonsense_Mutation p.R328* 0.25 TCGA-G4-6625-01 19 9071918 9071918 C G MUC16 Missense_Mutation p.E5176D 0.09 unknown(0) TCGA-G4-6625-01 1 117087075 117087075 G C CD58 Missense_Mutation p.F74L 0.23 deleterious(0.01) probably_damaging(0.967) TCGA-G4-6625-01 1 117654912 117654912 C T TRIM45 3'UTR 0.33 TCGA-G4-6625-01 1 117656105 117656105 G T TRIM45 Silent p.G490G 0.44 TCGA-G4-6625-01 1 150531083 150531083 G T ADAMTSL4 Silent p.G839G 0.38 TCGA-G4-6625-01 1 151315117 151315117 G A RFX5 Missense_Mutation p.R466W 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G4-6625-01 1 151501965 151501965 T C CGN Missense_Mutation p.L679P 0.08 deleterious(0.03) possibly_damaging(0.864) TCGA-G4-6625-01 1 160105374 160105374 G A ATP1A2 Missense_Mutation p.V756I 0.41 tolerated(0.08) benign(0.117) TCGA-G4-6625-01 1 228404851 228404851 C G OBSCN Missense_Mutation p.H839D 0.35 benign(0.064) TCGA-G4-6625-01 1 236212086 236212086 C A NID1 Silent p.P143P 0.29 TCGA-G4-6625-01 1 87208914 87208914 A G SH3GLB1 Missense_Mutation p.N386S 0.17 tolerated(1) probably_damaging(0.999) TCGA-G4-6625-01 20 44533606 44533606 A C PLTP Missense_Mutation p.L286R 0.07 deleterious(0) probably_damaging(0.962) TCGA-G4-6625-01 20 50133456 50133456 G A NFATC2 Missense_Mutation p.P400L 0.11 tolerated(0.15) benign(0.353) TCGA-G4-6625-01 20 58443507 58443508 - T SYCP2 Frame_Shift_Ins p.L1317Tfs*3 0.32 TCGA-G4-6625-01 20 58521295 58521295 A G FAM217B 3'UTR 0.13 TCGA-G4-6625-01 20 60509179 60509179 C T CDH4 Silent p.G815G 0.53 TCGA-G4-6625-01 21 37711220 37711220 G A MORC3 Splice_Site p.X203_splice 0.15 TCGA-G4-6625-01 22 29517444 29517444 G C KREMEN1 Missense_Mutation p.S151T 0.15 tolerated(0.19) benign(0.192) TCGA-G4-6625-01 22 38341049 38341049 G A C22orf23 Silent p.L161L 0.14 TCGA-G4-6625-01 22 39884751 39884751 G A MGAT3 Missense_Mutation p.G467S 0.20 deleterious(0.05) benign(0.299) TCGA-G4-6625-01 22 43625187 43625187 G A SCUBE1 Silent p.D325D 0.09 TCGA-G4-6625-01 22 45944506 45944506 C T FBLN1 Silent p.C485C 0.20 TCGA-G4-6625-01 2 100194868 100194868 G A AFF3 Missense_Mutation p.R972W 0.33 deleterious(0.04) probably_damaging(0.913) TCGA-G4-6625-01 2 108487514 108487514 C T RGPD4 Silent p.S1018S 0.11 TCGA-G4-6625-01 2 110374795 110374795 T A SOWAHC 3'UTR 0.10 TCGA-G4-6625-01 2 131103157 131103157 C G IMP4 Missense_Mutation p.F108L 0.21 tolerated(0.23) benign(0.107) TCGA-G4-6625-01 2 149241035 149241035 G A MBD5 Intron 0.12 TCGA-G4-6625-01 2 170366588 170366588 C T KLHL41 Silent p.D100D 0.09 TCGA-G4-6625-01 2 170502659 170502659 G A CCDC173 Nonsense_Mutation p.Q451* 0.06 TCGA-G4-6625-01 2 189868140 189868140 C A COL3A1 Missense_Mutation p.P853T 0.12 unknown(0) TCGA-G4-6625-01 2 196722146 196722146 G T DNAH7 Missense_Mutation p.A2790D 0.11 deleterious(0) probably_damaging(0.934) TCGA-G4-6625-01 2 210742711 210742711 G T UNC80 Missense_Mutation p.G1294W 0.17 possibly_damaging(0.729) TCGA-G4-6625-01 2 215274985 215274985 C T SPAG16 Silent p.D614D 0.12 TCGA-G4-6625-01 2 216271061 216271061 T C FN1 Silent p.A962A 0.14 TCGA-G4-6625-01 2 231253289 231253289 A C SP140L Missense_Mutation p.K267T 0.38 tolerated(0.14) benign(0.363) TCGA-G4-6625-01 2 70106122 70106123 - A GMCL1 Frame_Shift_Ins p.N515Efs*22 0.19 TCGA-G4-6625-01 3 108672673 108672673 C A GUCA1C 5'UTR 0.32 TCGA-G4-6625-01 3 111693432 111693432 T C PHLDB2 3'UTR 0.10 TCGA-G4-6625-01 3 134264548 134264548 G A CEP63 Missense_Mutation p.E226K 0.15 deleterious(0) benign(0.234) TCGA-G4-6625-01 3 38640530 38640530 C T SCN5A Silent p.S634S 0.31 TCGA-G4-6625-01 3 8794699 8794699 G A OXTR Silent p.S378S 0.15 TCGA-G4-6625-01 4 30921914 30921914 C T PCDH7 Missense_Mutation p.A1105V 0.16 tolerated(0.16) possibly_damaging(0.811) TCGA-G4-6625-01 4 3495183 3495183 G A DOK7 Silent p.S490S 0.11 TCGA-G4-6625-01 4 52862203 52862203 G C LRRC66 Missense_Mutation p.H329D 0.18 tolerated(0.34) benign(0.002) TCGA-G4-6625-01 4 56736851 56736851 T A EXOC1 Missense_Mutation p.I204N 0.19 deleterious(0) probably_damaging(0.996) TCGA-G4-6625-01 4 70346407 70346407 C G UGT2B4 Missense_Mutation p.C511S 0.18 deleterious(0.01) benign(0.314) TCGA-G4-6625-01 4 95129627 95129627 T G SMARCAD1 Missense_Mutation p.S28A 0.13 tolerated_low_confidence(0.91) benign(0.001) TCGA-G4-6625-01 5 112175271 112175271 C G APC Nonsense_Mutation p.S1327* 0.34 TCGA-G4-6625-01 5 132197693 132197693 C A GDF9 Missense_Mutation p.R318L 0.28 deleterious(0) probably_damaging(0.938) TCGA-G4-6625-01 5 140232334 140232334 G C PCDHA9 Intron 0.33 TCGA-G4-6625-01 5 176859274 176859274 G A GRK6 Missense_Mutation p.C101Y 0.11 tolerated(1) possibly_damaging(0.856) TCGA-G4-6625-01 5 3599374 3599374 G T IRX1 Silent p.V104V 0.21 TCGA-G4-6625-01 5 3599605 3599605 G A IRX1 Silent p.A181A 0.27 TCGA-G4-6625-01 5 54439418 54439418 T A CDC20B Missense_Mutation p.N137Y 0.21 tolerated(0.42) benign(0.016) TCGA-G4-6625-01 6 131946089 131946089 A C MED23 Missense_Mutation p.I67S 0.11 deleterious(0.03) probably_damaging(0.969) TCGA-G4-6625-01 6 13978370 13978370 G T RNF182 3'UTR 0.36 TCGA-G4-6625-01 6 1611193 1611193 G A FOXC1 Silent p.R171R 0.39 TCGA-G4-6625-01 6 51913342 51913342 A G PKHD1 Silent p.S785S 0.09 TCGA-G4-6625-01 6 54805227 54805228 - A FAM83B Frame_Shift_Ins p.T487Nfs*8 0.26 TCGA-G4-6625-01 6 56473240 56473240 G T DST Intron 0.28 TCGA-G4-6625-01 6 72947616 72947616 C A RIMS1 Missense_Mutation p.L650I 0.31 deleterious(0.04) probably_damaging(0.982) TCGA-G4-6625-01 6 74104610 74104610 C T DDX43 5'UTR 0.29 TCGA-G4-6625-01 6 87725142 87725142 G C HTR1E Silent p.V30V 0.11 TCGA-G4-6625-01 7 123152364 123152364 G C IQUB Missense_Mutation p.Q11E 0.17 tolerated_low_confidence(0.28) benign(0.002) TCGA-G4-6625-01 7 12409623 12409623 G A VWDE Missense_Mutation p.T770M 0.09 tolerated(0.07) benign(0.083) TCGA-G4-6625-01 7 128489018 128489018 A G FLNC Missense_Mutation p.S1637G 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-G4-6625-01 7 134672705 134672705 G C AGBL3 Missense_Mutation p.K7N 0.13 tolerated(0.06) benign(0.082) TCGA-G4-6625-01 7 135412202 135412202 G T SLC13A4 Missense_Mutation p.L15M 0.09 deleterious(0.04) possibly_damaging(0.472) TCGA-G4-6625-01 7 20739529 20739529 T G ABCB5 Missense_Mutation p.C746G 0.08 deleterious(0.02) benign(0.062) TCGA-G4-6625-01 7 38812167 38812167 G T VPS41 Missense_Mutation p.D361E 0.24 tolerated(0.13) probably_damaging(0.974) TCGA-G4-6625-01 7 45108055 45108055 G T CCM2 Silent p.G183G 0.12 TCGA-G4-6625-01 7 71743734 71743734 G A CALN1 Nonsense_Mutation p.R61* 0.11 TCGA-G4-6625-01 7 82545650 82545650 A T PCLO Silent p.P3884P 0.09 TCGA-G4-6625-01 7 90546981 90546981 C T CDK14 Silent p.D238D 0.14 TCGA-G4-6625-01 8 144994217 144994217 T C PLEC Missense_Mutation p.S3395G 0.14 benign(0.416) TCGA-G4-6625-01 8 21883243 21883243 C T NPM2 Missense_Mutation p.P77L 0.18 deleterious(0) probably_damaging(0.939) TCGA-G4-6625-01 8 22023034 22023034 A G BMP1 Missense_Mutation p.E39G 0.17 deleterious_low_confidence(0.01) benign(0.001) TCGA-G4-6625-01 8 41790493 41790493 C T KAT6A Missense_Mutation p.A1749T 0.25 unknown(0) TCGA-G4-6625-01 8 86569672 86569672 T G REXO1L1P 3'UTR 0.28 TCGA-G4-6625-01 8 92983039 92983039 C T RUNX1T1 Silent p.T473T 0.10 TCGA-G4-6625-01 9 101891278 101891278 G A TGFBR1 Missense_Mutation p.R80Q 0.08 tolerated(0.48) benign(0.194) TCGA-G4-6625-01 9 116931707 116931707 G T COL27A1 Missense_Mutation p.M624I 0.21 unknown(0) TCGA-G4-6625-01 9 130472910 130472910 G A C9orf117 Missense_Mutation p.R155Q 0.17 tolerated(0.09) probably_damaging(0.998) TCGA-G4-6625-01 9 131708268 131708268 C T DOLK Missense_Mutation p.V439I 0.27 tolerated(0.3) benign(0.01) TCGA-G4-6625-01 9 37692645 37692645 G A FRMPD1 Missense_Mutation p.E3K 0.09 deleterious(0.02) benign(0.169) TCGA-G4-6625-01 9 464416 464416 G T DOCK8 3'UTR 0.44 TCGA-G4-6625-01 9 77249623 77249623 C T RORB Missense_Mutation p.T57M 0.20 deleterious(0.03) probably_damaging(0.953) TCGA-G4-6625-01 9 80336219 80336219 C T GNAQ 3'UTR 0.12 TCGA-G4-6625-01 X 105011309 105011309 C T IL1RAPL2 Silent p.S572S 0.26 TCGA-G4-6625-01 X 105450550 105450550 C T MUM1L1 Silent p.D375D 0.09 TCGA-G4-6625-01 X 119666397 119666399 TCT CC CUL4B Frame_Shift_Del p.R791Gfs*31 0.12 TCGA-G4-6625-01 X 120008858 120008858 C T CT47B1 Missense_Mutation p.A223T 0.22 tolerated(0.27) unknown(0) TCGA-G4-6625-01 X 132833946 132833946 T A GPC3 Missense_Mutation p.E404D 0.08 tolerated(0.06) benign(0.241) TCGA-G4-6625-01 X 135328254 135328254 G A MAP7D3 Missense_Mutation p.R75C 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6625-01 X 136649552 136649552 C T ZIC3 Silent p.H234H 0.28 TCGA-G4-6625-01 X 151821286 151821286 G A GABRQ Missense_Mutation p.E481K 0.11 tolerated(0.46) benign(0.008) TCGA-G4-6625-01 X 152936002 152936002 C A PNCK Silent p.G397G 0.12 TCGA-G4-6625-01 X 153184696 153184696 C T ARHGAP4 Silent p.K281K 0.07 TCGA-G4-6625-01 X 18209221 18209221 G C BEND2 Silent p.G396G 0.12 TCGA-G4-6625-01 X 27765563 27765563 G A DCAF8L2 Missense_Mutation p.R184Q 0.37 tolerated(0.19) benign(0.057) TCGA-G4-6625-01 X 41587702 41587702 T G GPR82 3'UTR 0.07 TCGA-G4-6625-01 X 49083125 49083125 C T CACNA1F Missense_Mutation p.R450H 0.33 tolerated(0.2) benign(0.002) TCGA-G4-6625-01 X 54956930 54956930 G C TRO Missense_Mutation p.G1258A 0.24 deleterious_low_confidence(0.03) probably_damaging(0.978) TCGA-G4-6625-01 X 78426851 78426851 G A GPR174 Missense_Mutation p.R116Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-G4-6625-01 X 79999631 79999631 G A BRWD3 Missense_Mutation p.A238V 0.36 deleterious(0) probably_damaging(0.951) TCGA-G4-6626-01 10 105670370 105670370 C T OBFC1 Silent p.L48L 0.59 TCGA-G4-6626-01 11 100920780 100920780 T C PGR Missense_Mutation p.K790E 0.09 deleterious(0.01) benign(0.24) TCGA-G4-6626-01 11 104971416 104971416 C G CARD17 Missense_Mutation p.R33T 0.08 deleterious(0.01) possibly_damaging(0.493) TCGA-G4-6626-01 11 1077670 1077670 C T MUC2 Silent p.R140R 0.22 TCGA-G4-6626-01 11 125647298 125647298 G T PATE2 Nonsense_Mutation p.C107* 0.25 TCGA-G4-6626-01 11 130332045 130332045 G A ADAMTS15 Missense_Mutation p.R385Q 0.18 tolerated(0.64) benign(0.002) TCGA-G4-6626-01 11 33124690 33124690 C T CSTF3 Missense_Mutation p.R209Q 0.34 tolerated(0.06) benign(0.122) TCGA-G4-6626-01 11 4510192 4510192 G T OR52K1 Missense_Mutation p.G21V 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6626-01 11 47296400 47296400 C T MADD Missense_Mutation p.R117C 0.24 deleterious(0) possibly_damaging(0.556) TCGA-G4-6626-01 11 47355558 47355558 C T MYBPC3 Missense_Mutation p.R970Q 0.10 tolerated(0.35) possibly_damaging(0.895) TCGA-G4-6626-01 11 4903671 4903671 G T OR51T1 Missense_Mutation p.C208F 0.39 deleterious(0) probably_damaging(0.999) TCGA-G4-6626-01 11 56185623 56185623 C A OR5R1 Missense_Mutation p.G29V 0.38 tolerated(0.8) benign(0) TCGA-G4-6626-01 11 63327600 63327600 G A HRASLS2 Silent p.A25A 0.10 TCGA-G4-6626-01 11 65961029 65961029 C T PACS1 Silent p.I143I 0.07 TCGA-G4-6626-01 11 69978154 69978154 G A ANO1 Silent p.T409T 0.34 TCGA-G4-6626-01 11 71939506 71939506 C T INPPL1 Nonsense_Mutation p.R121* 0.36 TCGA-G4-6626-01 11 73801908 73801908 A G C2CD3 Silent p.V1197V 0.09 TCGA-G4-6626-01 11 89531784 89531784 C A TRIM49 Silent p.L291L 0.09 TCGA-G4-6626-01 11 89774232 89774232 G T TRIM49C Silent p.L291L 0.31 TCGA-G4-6626-01 12 101711394 101711394 C T UTP20 Silent p.P897P 0.23 TCGA-G4-6626-01 12 107254187 107254187 C G RIC8B Missense_Mutation p.P483R 0.50 deleterious(0) probably_damaging(1) TCGA-G4-6626-01 12 117290621 117290621 C T RNFT2 3'Flank 0.13 TCGA-G4-6626-01 12 117461971 117461971 C T FBXW8 Missense_Mutation p.R463C 0.20 deleterious(0) probably_damaging(0.997) TCGA-G4-6626-01 12 120067570 120067570 C T TMEM233 Silent p.Y72Y 0.20 TCGA-G4-6626-01 12 121131926 121131926 C A MLEC Missense_Mutation p.R90S 0.21 deleterious(0) probably_damaging(0.999) TCGA-G4-6626-01 12 27135786 27135786 A G TM7SF3 Missense_Mutation p.V292A 0.09 tolerated(0.15) benign(0.004) TCGA-G4-6626-01 12 53499355 53499355 C T SOAT2 Missense_Mutation p.P96S 0.24 tolerated(0.39) benign(0.017) TCGA-G4-6626-01 12 56524643 56524643 G A ESYT1 Silent p.P167P 0.26 TCGA-G4-6626-01 12 57396584 57396584 C T ZBTB39 Silent p.A706A 0.20 TCGA-G4-6626-01 12 57963186 57963186 C T KIF5A Missense_Mutation p.R323W 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6626-01 12 70956847 70956847 G A PTPRB Silent p.S1315S 0.38 TCGA-G4-6626-01 12 81688676 81688676 G A PPFIA2 Nonsense_Mutation p.R955* 0.36 TCGA-G4-6626-01 12 98848956 98848956 G A SLC9A7P1 RNA 0.52 TCGA-G4-6626-01 13 101936302 101936302 G A NALCN Silent p.R372R 0.45 TCGA-G4-6626-01 13 103396424 103396424 G A LINC00283 RNA 0.37 TCGA-G4-6626-01 13 37569724 37569724 C T ALG5 Missense_Mutation p.V26I 0.42 tolerated(0.74) benign(0.003) TCGA-G4-6626-01 14 100820787 100820787 G T WARS Missense_Mutation p.T180K 0.47 deleterious(0) probably_damaging(0.962) TCGA-G4-6626-01 14 105236662 105236662 G A AKT1 3'UTR 0.36 TCGA-G4-6626-01 14 106207947 106207947 A G IGHG1 Missense_Mutation p.S286P 0.22 deleterious(0) probably_damaging(0.94) TCGA-G4-6626-01 14 25100285 25100285 G T GZMB Missense_Mutation p.R246S 0.43 tolerated(0.11) benign(0.006) TCGA-G4-6626-01 14 75386560 75386560 G C RPS6KL1 Silent p.A126A 0.36 TCGA-G4-6626-01 14 81610404 81610404 C A TSHR Missense_Mutation p.P668T 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6626-01 14 93760624 93760624 C G BTBD7 Missense_Mutation p.D248H 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6626-01 14 96134632 96134632 G T TCL6 Intron 0.48 TCGA-G4-6626-01 14 96731069 96731069 C T BDKRB1 Silent p.F350F 0.28 TCGA-G4-6626-01 15 21071386 21071386 G A POTEB2 Silent p.S75S 0.13 TCGA-G4-6626-01 15 42579896 42579896 T C GANC Missense_Mutation p.L70P 0.13 benign(0.242) TCGA-G4-6626-01 15 59373411 59373412 CA - RNF111 Frame_Shift_Del p.Q743Efs*6 0.48 TCGA-G4-6626-01 15 74883550 74883550 G A ARID3B Missense_Mutation p.E314K 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6626-01 15 86312255 86312255 T A KLHL25 Nonsense_Mutation p.K263* 0.49 TCGA-G4-6626-01 16 30528979 30528979 G A ITGAL Missense_Mutation p.V996M 0.31 deleterious(0.01) benign(0.228) TCGA-G4-6626-01 16 67916479 67916479 C T EDC4 Missense_Mutation p.R1142W 0.36 deleterious(0.01) possibly_damaging(0.792) TCGA-G4-6626-01 16 70513088 70513088 C G FUK Missense_Mutation p.L979V 0.48 deleterious(0) possibly_damaging(0.842) TCGA-G4-6626-01 16 72821679 72821679 T C ZFHX3 Missense_Mutation p.E3499G 0.10 unknown(0) TCGA-G4-6626-01 16 9857679 9857679 C T GRIN2A Missense_Mutation p.R1241Q 0.35 tolerated(0.25) possibly_damaging(0.679) TCGA-G4-6626-01 17 18221084 18221084 C T SMCR8 Missense_Mutation p.R661W 0.14 deleterious(0.02) possibly_damaging(0.614) TCGA-G4-6626-01 17 29095940 29095940 T A SUZ12P RNA 0.37 TCGA-G4-6626-01 17 29161991 29161991 G T ATAD5 Nonsense_Mutation p.E298* 0.74 TCGA-G4-6626-01 17 51900949 51900949 C T KIF2B Silent p.Y185Y 0.24 TCGA-G4-6626-01 17 60107344 60107344 T C MED13 Missense_Mutation p.K347R 0.79 tolerated(0.14) possibly_damaging(0.465) TCGA-G4-6626-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.60 tolerated(0.11) benign(0.308) TCGA-G4-6626-01 18 29055971 29055971 C T DSG3 Silent p.V916V 0.72 TCGA-G4-6626-01 19 16263916 16263916 C G HSH2D 3'UTR 0.30 TCGA-G4-6626-01 19 18967089 18967089 G A UPF1 Missense_Mutation p.A602T 0.17 tolerated(0.4) benign(0.186) TCGA-G4-6626-01 19 22940807 22940807 G T ZNF99 Missense_Mutation p.T635N 0.23 tolerated(1) possibly_damaging(0.457) TCGA-G4-6626-01 19 35850843 35850843 G A FFAR3 3'UTR 0.14 TCGA-G4-6626-01 19 37644404 37644404 C A ZNF585A Missense_Mutation p.A78S 0.19 tolerated(0.77) benign(0.008) TCGA-G4-6626-01 19 44610297 44610297 C T ZNF224 Intron 0.42 TCGA-G4-6626-01 19 49564584 49564584 C G NTF4 3'UTR 0.12 TCGA-G4-6626-01 19 57867600 57867600 G A ZNF304 Silent p.L121L 0.30 TCGA-G4-6626-01 19 6452331 6452331 C T SLC25A23 Missense_Mutation p.V355I 0.16 tolerated(0.22) benign(0.26) TCGA-G4-6626-01 1 115168051 115168051 G A DENND2C Silent p.Y185Y 0.27 TCGA-G4-6626-01 1 152733224 152733224 G A KPRP Missense_Mutation p.R387H 0.22 tolerated_low_confidence(0.05) benign(0.209) TCGA-G4-6626-01 1 152759788 152759788 C A LCE1E Missense_Mutation p.Q5K 0.23 deleterious_low_confidence(0) unknown(0) TCGA-G4-6626-01 1 156950244 156950244 G A ARHGEF11 Silent p.G86G 0.37 TCGA-G4-6626-01 1 15766841 15766841 G A CTRC Missense_Mutation p.R29Q 0.67 deleterious(0) probably_damaging(0.999) TCGA-G4-6626-01 1 171251388 171251388 G A FMO1 Missense_Mutation p.A367T 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6626-01 1 171621716 171621716 C T MYOC Silent p.G12G 0.44 TCGA-G4-6626-01 1 175355235 175355235 G A TNR Silent p.Y570Y 0.22 TCGA-G4-6626-01 1 204518820 204518820 G A MDM4 3'UTR 0.38 TCGA-G4-6626-01 1 210856913 210856913 C T KCNH1 Missense_Mutation p.V894M 0.25 tolerated_low_confidence(0.28) benign(0.017) TCGA-G4-6626-01 1 225267122 225267122 T C DNAH14 Missense_Mutation p.F814L 0.18 tolerated(0.09) benign(0.153) TCGA-G4-6626-01 1 228480476 228480476 T A OBSCN Missense_Mutation p.L4048H 0.30 probably_damaging(0.999) TCGA-G4-6626-01 1 230461107 230461107 G A PGBD5 Missense_Mutation p.A374V 0.20 tolerated(0.18) probably_damaging(0.993) TCGA-G4-6626-01 1 236180572 236180572 A G NID1 Silent p.D710D 0.09 TCGA-G4-6626-01 1 54706581 54706581 C T SSBP3 Missense_Mutation p.A285T 0.34 deleterious(0.04) benign(0.025) TCGA-G4-6626-01 1 6202356 6202356 C T CHD5 Silent p.A756A 0.59 TCGA-G4-6626-01 1 68906678 68906678 A G RPE65 Silent p.D167D 0.37 TCGA-G4-6626-01 1 70385429 70385429 C T LRRC7 Intron 0.12 TCGA-G4-6626-01 20 17600349 17600349 C T RRBP1 Missense_Mutation p.E769K 0.30 deleterious(0) possibly_damaging(0.486) TCGA-G4-6626-01 20 33805852 33805852 C T AL121753.1 3'Flank 0.15 TCGA-G4-6626-01 20 33874568 33874568 G A FAM83C Missense_Mutation p.R672W 0.11 tolerated_low_confidence(0.09) benign(0.064) TCGA-G4-6626-01 20 37356566 37356566 C T SLC32A1 Missense_Mutation p.R288W 0.30 deleterious(0) probably_damaging(0.964) TCGA-G4-6626-01 20 45131127 45131127 C T ZNF334 Missense_Mutation p.R284Q 0.06 tolerated(1) benign(0) TCGA-G4-6626-01 20 48431610 48431610 C T SLC9A8 Missense_Mutation p.T31M 0.16 deleterious_low_confidence(0.01) benign(0.292) TCGA-G4-6626-01 20 52561294 52561294 G A BCAS1 3'UTR 0.38 TCGA-G4-6626-01 20 61461935 61461935 G A COL9A3 Missense_Mutation p.D428N 0.11 deleterious(0.04) benign(0.175) TCGA-G4-6626-01 21 31709682 31709682 G T KRTAP27-1 Nonsense_Mutation p.S102* 0.56 TCGA-G4-6626-01 22 46685333 46685333 C T TTC38 Nonsense_Mutation p.R373* 0.60 TCGA-G4-6626-01 2 112588974 112588974 C T ANAPC1 Silent p.T838T 0.22 TCGA-G4-6626-01 2 113780067 113780067 G A IL36B 3'UTR 0.45 TCGA-G4-6626-01 2 152581386 152581386 C T NEB Silent p.S164S 0.52 TCGA-G4-6626-01 2 179466051 179466051 C T TTN Missense_Mutation p.R18558H 0.28 TCGA-G4-6626-01 2 183584885 183584885 G A DNAJC10 Missense_Mutation p.R119H 0.25 tolerated(0.06) benign(0.045) TCGA-G4-6626-01 2 197184599 197184599 G T HECW2 Missense_Mutation p.L339I 0.23 tolerated_low_confidence(0.39) benign(0.081) TCGA-G4-6626-01 2 210636836 210636836 G A UNC80 Missense_Mutation p.G14S 0.28 benign(0.001) TCGA-G4-6626-01 2 235951547 235951547 G A SH3BP4 Missense_Mutation p.G712S 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6626-01 2 241660353 241660353 G A KIF1A Missense_Mutation p.R1616W 0.40 deleterious(0) possibly_damaging(0.655) TCGA-G4-6626-01 2 27598446 27598446 A G SNX17 Missense_Mutation p.E283G 0.40 deleterious(0.04) possibly_damaging(0.621) TCGA-G4-6626-01 3 10143068 10143068 T C FANCD2 3'Flank 0.26 TCGA-G4-6626-01 3 121345775 121345775 G A FBXO40 3'UTR 0.38 TCGA-G4-6626-01 3 12858544 12858544 G A CAND2 Missense_Mutation p.E705K 0.55 deleterious(0) probably_damaging(0.998) TCGA-G4-6626-01 3 142840620 142840620 C T CHST2 Missense_Mutation p.P321L 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6626-01 3 151017872 151017872 G A GPR87 Missense_Mutation p.T6M 0.17 deleterious_low_confidence(0.02) benign(0.084) TCGA-G4-6626-01 3 151458468 151458468 A T AADACL2 Missense_Mutation p.Y58F 0.30 tolerated(0.58) benign(0.009) TCGA-G4-6626-01 3 167293907 167293907 C T WDR49 Silent p.L95L 0.40 TCGA-G4-6626-01 3 179576923 179576923 C T PEX5L Missense_Mutation p.R250H 0.11 deleterious(0) probably_damaging(0.978) TCGA-G4-6626-01 3 24006538 24006538 C T NR1D2 Missense_Mutation p.S406L 0.36 deleterious(0.02) benign(0.1) TCGA-G4-6626-01 3 36534709 36534709 C T STAC Missense_Mutation p.R252C 0.33 deleterious(0.02) possibly_damaging(0.849) TCGA-G4-6626-01 3 51982356 51982356 G A PARP3 Missense_Mutation p.D495N 0.35 deleterious(0.05) benign(0.264) TCGA-G4-6626-01 3 89390945 89390945 C T EPHA3 Silent p.N337N 0.42 TCGA-G4-6626-01 4 104067170 104067170 T A CENPE Missense_Mutation p.K1410I 0.58 possibly_damaging(0.548) TCGA-G4-6626-01 4 110415910 110415910 C A SEC24B Silent p.G462G 0.17 TCGA-G4-6626-01 4 123664942 123664944 CTT - BBS12 In_Frame_Del p.S634del 0.15 TCGA-G4-6626-01 4 135121643 135121643 G A PABPC4L Missense_Mutation p.R236C 0.16 deleterious(0) probably_damaging(0.996) TCGA-G4-6626-01 4 70079848 70079848 A G UGT2B11 Missense_Mutation p.M198T 0.19 tolerated(0.28) benign(0.134) TCGA-G4-6626-01 4 74736341 74736346 GCAGAG - CXCL1 3'UTR 0.48 TCGA-G4-6626-01 4 80828579 80828579 C T ANTXR2 3'UTR 0.25 TCGA-G4-6626-01 5 112128191 112128191 C T APC Nonsense_Mutation p.R232* 0.81 TCGA-G4-6626-01 5 1221851 1221851 G A SLC6A19 Silent p.P579P 0.21 TCGA-G4-6626-01 5 140745641 140745641 G A PCDHGA5 Missense_Mutation p.A582T 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.858) TCGA-G4-6626-01 5 1411361 1411361 G A SLC6A3 Silent p.S422S 0.22 TCGA-G4-6626-01 5 150090845 150090845 C T DCTN4 Missense_Mutation p.V424M 0.21 deleterious(0.03) benign(0.232) TCGA-G4-6626-01 5 154307045 154307045 G A GEMIN5 Missense_Mutation p.S327L 0.51 deleterious(0) benign(0.354) TCGA-G4-6626-01 5 2749835 2749835 C T IRX2 Missense_Mutation p.A106T 0.44 deleterious(0.03) benign(0.284) TCGA-G4-6626-01 5 39377056 39377056 C G DAB2 Missense_Mutation p.M611I 0.10 tolerated(0.15) benign(0.004) TCGA-G4-6626-01 5 677921 677921 C T TPPP Silent p.V85V 0.30 TCGA-G4-6626-01 5 71756485 71756485 G A ZNF366 Missense_Mutation p.P280L 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6626-01 5 96349498 96349498 C T LNPEP Nonsense_Mutation p.R728* 0.27 TCGA-G4-6626-01 6 10984132 10984132 C T ELOVL2 Missense_Mutation p.R258Q 0.23 tolerated(0.31) benign(0.017) TCGA-G4-6626-01 6 123957928 123957928 G A TRDN 5'UTR 0.33 TCGA-G4-6626-01 6 126333942 126333944 AAG - TRMT11 In_Frame_Del p.R319del 0.24 TCGA-G4-6626-01 6 134210746 134210746 G A TCF21 Missense_Mutation p.G71R 0.23 tolerated(0.17) benign(0.011) TCGA-G4-6626-01 6 143091068 143091068 C T HIVEP2 Missense_Mutation p.R1603Q 0.31 tolerated(0.35) benign(0) TCGA-G4-6626-01 6 24588924 24588924 C T KIAA0319 Silent p.P297P 0.29 TCGA-G4-6626-01 6 28964137 28964137 G A ZNF311 Silent p.T214T 0.40 TCGA-G4-6626-01 6 29431209 29431209 G A OR2H1 3'UTR 0.34 TCGA-G4-6626-01 6 32154614 32154614 G A PBX2 Silent p.N363N 0.10 TCGA-G4-6626-01 6 35047618 35047618 C T ANKS1A Silent p.L819L 0.40 TCGA-G4-6626-01 6 350745 350745 C A DUSP22 Intron 0.15 TCGA-G4-6626-01 6 42986291 42986291 G T KLHDC3 Missense_Mutation p.A244S 0.37 deleterious(0.04) probably_damaging(0.913) TCGA-G4-6626-01 6 51918009 51918009 G A PKHD1 Missense_Mutation p.R669C 0.38 tolerated(0.2) benign(0.006) TCGA-G4-6626-01 6 70850873 70850873 G A COL19A1 Missense_Mutation p.G492R 0.32 deleterious(0) probably_damaging(1) TCGA-G4-6626-01 6 9903672 9903672 C T OFCC1 Intron 0.27 TCGA-G4-6626-01 7 100210561 100210561 C T MOSPD3 Silent p.S49S 0.39 TCGA-G4-6626-01 7 100280850 100280850 G A GIGYF1 Missense_Mutation p.R733W 0.36 deleterious(0) unknown(0) TCGA-G4-6626-01 7 100483960 100483960 G A SRRT Silent p.V517V 0.30 TCGA-G4-6626-01 7 106508855 106508855 C T PIK3CG Silent p.G283G 0.19 TCGA-G4-6626-01 7 127231349 127231349 G A ARF5 Missense_Mutation p.R180H 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.532) TCGA-G4-6626-01 7 138603521 138603521 C A KIAA1549 Missense_Mutation p.S284I 0.49 deleterious(0) possibly_damaging(0.878) TCGA-G4-6626-01 7 141424951 141424951 G T WEE2 Silent p.P449P 0.42 TCGA-G4-6626-01 7 31377888 31377888 T C NEUROD6 Missense_Mutation p.N332S 0.50 tolerated(0.05) possibly_damaging(0.636) TCGA-G4-6626-01 7 48431530 48431530 G A ABCA13 Silent p.T3889T 0.28 TCGA-G4-6626-01 7 6194003 6194003 G A USP42 Missense_Mutation p.E940K 0.36 tolerated(0.27) possibly_damaging(0.62) TCGA-G4-6626-01 7 64439648 64439648 T A ZNF117 Missense_Mutation p.M101L 0.36 deleterious(0.02) benign(0.007) TCGA-G4-6626-01 7 70885929 70885929 G A WBSCR17 Missense_Mutation p.R267Q 0.19 deleterious(0.04) benign(0.009) TCGA-G4-6626-01 7 72436564 72436564 G T TRIM74 Missense_Mutation p.S42Y 0.13 deleterious(0) probably_damaging(0.948) TCGA-G4-6626-01 7 75028342 75028342 C A TRIM73 Missense_Mutation p.S42Y 0.21 deleterious(0) probably_damaging(0.948) TCGA-G4-6626-01 7 95434040 95434040 A G DYNC1I1 5'UTR 0.09 TCGA-G4-6626-01 7 99084903 99084903 T C ZNF789 Missense_Mutation p.I357T 0.28 tolerated(0.36) benign(0.088) TCGA-G4-6626-01 8 114448940 114448940 G A CSMD3 Silent p.N48N 0.38 TCGA-G4-6626-01 8 12881592 12881592 G A KIAA1456 3'UTR 0.65 TCGA-G4-6626-01 8 139890387 139890387 C T COL22A1 Silent p.T88T 0.31 TCGA-G4-6626-01 8 145624542 145624542 G A CPSF1 Silent p.G481G 0.28 TCGA-G4-6626-01 8 24771781 24771781 G A NEFM Missense_Mutation p.A159T 0.38 tolerated(0.08) unknown(0) TCGA-G4-6626-01 8 3015449 3015449 G A CSMD1 Missense_Mutation p.R1962C 0.50 probably_damaging(0.996) TCGA-G4-6626-01 8 77617451 77617451 G A ZFHX4 Silent p.P376P 0.30 TCGA-G4-6626-01 8 87641195 87641195 G A CNGB3 Nonsense_Mutation p.R478* 0.38 TCGA-G4-6626-01 9 114543279 114543279 G A C9orf84 5'UTR 0.20 TCGA-G4-6626-01 9 132576264 132576266 TAA - TOR1A In_Frame_Del p.Y330del 0.51 TCGA-G4-6626-01 9 138903727 138903727 G A NACC2 Missense_Mutation p.R467C 0.44 deleterious(0) probably_damaging(0.927) TCGA-G4-6626-01 9 139915972 139915972 G T ABCA2 Missense_Mutation p.Q257K 0.27 tolerated_low_confidence(0.08) benign(0.01) TCGA-G4-6626-01 9 33047118 33047118 A T SMU1 3'UTR 0.60 TCGA-G4-6626-01 9 66469107 66469107 C A RP11-262H14.1 RNA 0.29 TCGA-G4-6626-01 9 73150800 73150800 G T TRPM3 3'UTR 0.29 TCGA-G4-6626-01 9 77257529 77257529 C T RORB Silent p.H145H 0.24 TCGA-G4-6626-01 9 77390899 77390899 C A TRPM6 Silent p.L1101L 0.45 TCGA-G4-6626-01 X 133634157 133634157 G A HPRT1 3'UTR 0.39 TCGA-G4-6626-01 X 135092605 135092605 A G SLC9A6 Missense_Mutation p.I302V 0.76 tolerated(0.18) benign(0.084) TCGA-G4-6626-01 X 153881591 153881591 C T CTAG2 Missense_Mutation p.G67S 0.35 tolerated_low_confidence(0.5) unknown(0) TCGA-G4-6626-01 X 3261758 3261758 G C MXRA5 Silent p.V39V 0.78 TCGA-G4-6626-01 X 34961123 34961123 C T FAM47B Missense_Mutation p.R59C 0.37 deleterious(0.03) probably_damaging(0.958) TCGA-G4-6626-01 X 63411410 63411410 C T AMER1 Missense_Mutation p.R586Q 0.87 tolerated(0.25) benign(0.011) TCGA-G4-6626-01 X 80064039 80064039 A G BRWD3 Missense_Mutation p.L60P 0.74 deleterious(0) possibly_damaging(0.707) TCGA-G4-6627-01 10 61554322 61554322 G A CCDC6 Missense_Mutation p.T380M 0.09 deleterious(0.01) possibly_damaging(0.551) TCGA-G4-6627-01 10 70451078 70451078 A G TET1 Missense_Mutation p.E1973G 0.08 tolerated(0.11) benign(0.004) TCGA-G4-6627-01 10 73466675 73466675 C T C10orf105 3'Flank 0.14 TCGA-G4-6627-01 11 117982557 117982557 G A TMPRSS4 Missense_Mutation p.V229I 0.06 tolerated(1) benign(0.01) TCGA-G4-6627-01 11 118942339 118942339 G A VPS11 Missense_Mutation p.V223M 0.12 tolerated(0.22) benign(0.013) TCGA-G4-6627-01 11 126333192 126333192 C A KIRREL3 Missense_Mutation p.R201L 0.12 tolerated(0.12) probably_damaging(0.995) TCGA-G4-6627-01 11 20959368 20959368 G T NELL1 Missense_Mutation p.G345V 0.15 deleterious(0) probably_damaging(0.994) TCGA-G4-6627-01 11 47380423 47380423 G A SPI1 Silent p.P156P 0.18 TCGA-G4-6627-01 11 55563109 55563109 G T OR5D14 Missense_Mutation p.Q26H 0.10 deleterious(0.01) benign(0.224) TCGA-G4-6627-01 11 57509654 57509654 G C C11orf31 Missense_Mutation p.E112Q 0.07 tolerated(0.36) benign(0.018) TCGA-G4-6627-01 11 62414785 62414785 C T INTS5 Missense_Mutation p.A923T 0.10 tolerated(0.27) benign(0.002) TCGA-G4-6627-01 11 74647992 74647992 C T XRRA1 Silent p.K72K 0.07 TCGA-G4-6627-01 11 92531612 92531612 T C FAT3 Silent p.L1811L 0.07 TCGA-G4-6627-01 12 119943033 119943033 C A CCDC60 Missense_Mutation p.Q270K 0.18 tolerated(0.28) possibly_damaging(0.477) TCGA-G4-6627-01 12 123868733 123868734 AC - SETD8 5'UTR 0.23 TCGA-G4-6627-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.11 deleterious(0) possibly_damaging(0.479) TCGA-G4-6627-01 12 54115831 54115831 G A CALCOCO1 Missense_Mutation p.T196M 0.15 tolerated(0.1) benign(0.381) TCGA-G4-6627-01 12 56415080 56415080 A T IKZF4 Intron 0.30 TCGA-G4-6627-01 12 57857795 57857795 G A GLI1 Silent p.P38P 0.17 TCGA-G4-6627-01 12 6155892 6155892 G A VWF Missense_Mutation p.R760C 0.15 deleterious(0) probably_damaging(0.973) TCGA-G4-6627-01 12 76788441 76788441 A G OSBPL8 Silent p.A247A 0.13 TCGA-G4-6627-01 12 91445257 91445257 G T KERA Missense_Mutation p.L309M 0.13 tolerated(0.23) benign(0.04) TCGA-G4-6627-01 13 23910936 23910936 G T SACS Missense_Mutation p.S2360Y 0.14 benign(0.372) TCGA-G4-6627-01 13 58206753 58206753 G A PCDH17 Missense_Mutation p.V25M 0.19 deleterious(0) probably_damaging(0.984) TCGA-G4-6627-01 14 23865611 23865611 G A MYH6 Silent p.L771L 0.18 TCGA-G4-6627-01 14 56125332 56125332 G T KTN1 Missense_Mutation p.Q987H 0.12 deleterious(0) possibly_damaging(0.754) TCGA-G4-6627-01 14 92440990 92440990 T C TRIP11 Missense_Mutation p.Q1852R 0.12 tolerated(0.11) probably_damaging(0.997) TCGA-G4-6627-01 15 28424060 28424060 C T HERC2 Missense_Mutation p.V3046M 0.18 probably_damaging(0.989) TCGA-G4-6627-01 15 48782196 48782196 G A FBN1 Silent p.D978D 0.08 TCGA-G4-6627-01 15 77907235 77907235 G A LINGO1 Silent p.R338R 0.11 TCGA-G4-6627-01 15 84241447 84241447 C T SH3GL3 Silent p.I154I 0.16 TCGA-G4-6627-01 16 55519538 55519538 C T MMP2 Silent p.N227N 0.04 TCGA-G4-6627-01 16 81914544 81914544 C T PLCG2 Silent p.S226S 0.09 TCGA-G4-6627-01 16 86544601 86544601 C A FOXF1 Silent p.R142R 0.11 TCGA-G4-6627-01 16 89757008 89757008 G T CDK10 Missense_Mutation p.V70L 0.08 tolerated(0.54) benign(0.215) TCGA-G4-6627-01 17 11833305 11833305 C A DNAH9 Silent p.G4000G 0.15 TCGA-G4-6627-01 17 21318732 21318732 G A KCNJ12 Silent p.S26S 0.08 TCGA-G4-6627-01 17 26369953 26369953 C T NLK Silent p.G18G 0.11 TCGA-G4-6627-01 17 47294026 47294026 G A ABI3 Missense_Mutation p.R84Q 0.13 tolerated(0.06) benign(0.039) TCGA-G4-6627-01 17 70119762 70119763 - G SOX9 Frame_Shift_Ins p.R257Afs*39 0.12 TCGA-G4-6627-01 17 7247241 7247241 G A ACAP1 Missense_Mutation p.R212Q 0.16 tolerated(0.35) benign(0) TCGA-G4-6627-01 17 74387350 74387350 G A UBE2O Missense_Mutation p.P1185S 0.15 tolerated_low_confidence(0.5) benign(0.002) TCGA-G4-6627-01 18 47390601 47390601 G A MYO5B Silent p.H1251H 0.10 TCGA-G4-6627-01 18 67698157 67698157 A G RTTN Missense_Mutation p.S1868P 0.05 deleterious(0.03) benign(0.037) TCGA-G4-6627-01 19 13616784 13616784 G A CACNA1A Silent p.N85N 0.05 TCGA-G4-6627-01 19 15538192 15538192 G A WIZ Missense_Mutation p.R228W 0.11 deleterious(0) probably_damaging(0.996) TCGA-G4-6627-01 19 15918820 15918820 T C OR10H1 Missense_Mutation p.T10A 0.10 tolerated(0.08) benign(0.001) TCGA-G4-6627-01 19 22942451 22942451 G T ZNF99 Missense_Mutation p.P87Q 0.13 tolerated(0.17) possibly_damaging(0.743) TCGA-G4-6627-01 19 33655102 33655102 G A WDR88 Splice_Site p.X361_splice 0.08 TCGA-G4-6627-01 19 45411792 45411792 C T APOE Missense_Mutation p.A80V 0.13 tolerated(0.33) benign(0) TCGA-G4-6627-01 19 51378009 51378009 G A AC037199.1 Splice_Site p.X10_splice 0.06 TCGA-G4-6627-01 19 53993859 53993859 C T ZNF813 Nonsense_Mutation p.R125* 0.06 TCGA-G4-6627-01 19 55146604 55146604 G T LILRB1 Missense_Mutation p.E512D 0.09 tolerated(0.29) benign(0.022) TCGA-G4-6627-01 19 9070563 9070563 G C MUC16 Missense_Mutation p.T5628S 0.09 unknown(0) TCGA-G4-6627-01 1 115596001 115596001 G A TSPAN2 Missense_Mutation p.T200M 0.23 tolerated(1) benign(0.245) TCGA-G4-6627-01 1 150598227 150598227 G A ENSA Nonsense_Mutation p.Q97* 0.11 TCGA-G4-6627-01 1 152777623 152777623 C A LCE1C Missense_Mutation p.G111V 0.17 tolerated_low_confidence(0.12) unknown(0) TCGA-G4-6627-01 1 185175813 185175813 A G SWT1 Silent p.K630K 0.07 TCGA-G4-6627-01 1 247920937 247920937 C T OR1C1 Missense_Mutation p.V258I 0.10 deleterious(0.04) benign(0.156) TCGA-G4-6627-01 1 38095290 38095290 G A RSPO1 Missense_Mutation p.T15M 0.11 tolerated(1) benign(0.001) TCGA-G4-6627-01 1 41482967 41482967 C G SLFNL1 Missense_Mutation p.R347P 0.11 deleterious(0) probably_damaging(0.996) TCGA-G4-6627-01 1 47279953 47279953 A C CYP4B1 Missense_Mutation p.H283P 0.11 deleterious(0) probably_damaging(0.943) TCGA-G4-6627-01 1 51121194 51121194 T C FAF1 Missense_Mutation p.R222G 0.20 tolerated(0.09) possibly_damaging(0.632) TCGA-G4-6627-01 1 63286838 63286838 G T ATG4C Missense_Mutation p.D252Y 0.06 deleterious(0.01) possibly_damaging(0.827) TCGA-G4-6627-01 1 64100571 64100571 G A PGM1 Missense_Mutation p.V270I 0.15 tolerated(0.37) benign(0.002) TCGA-G4-6627-01 20 25206198 25206198 G A ENTPD6 Missense_Mutation p.D474N 0.06 tolerated(0.15) possibly_damaging(0.846) TCGA-G4-6627-01 20 2779127 2779127 A G CPXM1 Missense_Mutation p.S133P 0.22 deleterious(0) probably_damaging(0.999) TCGA-G4-6627-01 20 3644024 3644024 G A GFRA4 Missense_Mutation p.A8V 0.14 tolerated(1) benign(0.02) TCGA-G4-6627-01 20 60897469 60897469 G A LAMA5 Missense_Mutation p.R2068C 0.19 benign(0) TCGA-G4-6627-01 20 61939948 61939948 G A COL20A1 Missense_Mutation p.R277H 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6627-01 21 30968830 30968830 T C GRIK1-AS2 3'UTR 0.06 TCGA-G4-6627-01 21 37518650 37518650 C T CBR3 Missense_Mutation p.A225V 0.10 deleterious(0.01) benign(0.322) TCGA-G4-6627-01 21 46086531 46086531 C T KRTAP12-2 Silent p.R91R 0.06 TCGA-G4-6627-01 22 21348032 21348032 G A LZTR1 Missense_Mutation p.V448M 0.12 deleterious(0.01) possibly_damaging(0.833) TCGA-G4-6627-01 22 43618709 43618709 C A SCUBE1 Missense_Mutation p.G456V 0.07 tolerated(0.55) benign(0.003) TCGA-G4-6627-01 22 50903669 50903669 G A SBF1 Missense_Mutation p.P393L 0.08 deleterious(0) probably_damaging(0.937) TCGA-G4-6627-01 2 128628485 128628485 C A AMMECR1L Missense_Mutation p.R179L 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6627-01 2 179425592 179425592 G A TTN Nonsense_Mutation p.R28423* 0.13 TCGA-G4-6627-01 2 179596550 179596550 C A TTN Missense_Mutation p.K5684N 0.09 TCGA-G4-6627-01 2 187534462 187534462 C T ITGAV Missense_Mutation p.T876M 0.12 tolerated(0.12) benign(0.384) TCGA-G4-6627-01 2 191233949 191233949 C T INPP1 Missense_Mutation p.P196L 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6627-01 2 210704130 210704130 C T UNC80 Nonsense_Mutation p.R1076* 0.12 TCGA-G4-6627-01 2 212812269 212812269 G A ERBB4 Missense_Mutation p.R103C 0.14 deleterious(0) probably_damaging(1) TCGA-G4-6627-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.14 deleterious(0.01) probably_damaging(0.964) TCGA-G4-6627-01 2 70488498 70488498 C T PCYOX1 Silent p.D158D 0.05 TCGA-G4-6627-01 2 74642140 74642140 A G C2orf81 Silent p.P361P 0.25 TCGA-G4-6627-01 2 79254189 79254189 A C REG3G Missense_Mutation p.K75N 0.09 tolerated(0.2) benign(0) TCGA-G4-6627-01 3 152881635 152881635 C T RAP2B 3'UTR 0.10 TCGA-G4-6627-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-G4-6627-01 3 183967501 183967501 G A ECE2 Missense_Mutation p.G7S 0.13 tolerated_low_confidence(0.69) benign(0) TCGA-G4-6627-01 3 57422726 57422726 A C DNAH12 Missense_Mutation p.F1513C 0.08 deleterious(0) possibly_damaging(0.759) TCGA-G4-6627-01 3 98216757 98216757 C A OR5K2 Missense_Mutation p.T78N 0.11 deleterious(0.01) benign(0.044) TCGA-G4-6627-01 4 115997920 115997920 G A NDST4 Silent p.L91L 0.16 TCGA-G4-6627-01 4 122075717 122075717 G A TNIP3 Missense_Mutation p.R238C 0.06 deleterious(0) probably_damaging(0.999) TCGA-G4-6627-01 4 139140466 139140466 G A SLC7A11 Missense_Mutation p.R234W 0.16 deleterious(0.01) possibly_damaging(0.67) TCGA-G4-6627-01 4 5624673 5624673 G A EVC2 Nonsense_Mutation p.R698* 0.08 TCGA-G4-6627-01 4 62801754 62801754 G T LPHN3 Missense_Mutation p.G736C 0.07 deleterious(0) probably_damaging(0.976) TCGA-G4-6627-01 5 10992684 10992684 C T CTNND2 Missense_Mutation p.V1064M 0.11 tolerated(1) benign(0.002) TCGA-G4-6627-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.11 TCGA-G4-6627-01 5 112175255 112175255 G CC APC Frame_Shift_Ins p.E1322Pfs*10 0.15 TCGA-G4-6627-01 5 139740027 139740027 C T SLC4A9 Missense_Mutation p.A69V 0.16 tolerated(0.07) benign(0.014) TCGA-G4-6627-01 5 140188473 140188473 G T PCDHA4 Silent p.A567A 0.19 TCGA-G4-6627-01 5 153190646 153190646 G A GRIA1 Missense_Mutation p.R871H 0.23 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-G4-6627-01 5 31409388 31409388 A G DROSHA Missense_Mutation p.F1240S 0.13 deleterious(0) benign(0.441) TCGA-G4-6627-01 5 31449458 31449458 T C DROSHA Silent p.L917L 0.07 TCGA-G4-6627-01 5 36995828 36995828 C T NIPBL Missense_Mutation p.R1076C 0.21 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-G4-6627-01 5 54277899 54277899 G A ESM1 Missense_Mutation p.T126M 0.11 deleterious(0) probably_damaging(0.929) TCGA-G4-6627-01 5 56179416 56179416 G T MAP3K1 Missense_Mutation p.W1243C 0.07 deleterious(0) probably_damaging(0.998) TCGA-G4-6627-01 5 66479256 66479256 C T CD180 Missense_Mutation p.R472Q 0.18 tolerated(0.08) benign(0.002) TCGA-G4-6627-01 6 109768339 109768339 A G MICAL1 Missense_Mutation p.F722L 0.05 deleterious(0) probably_damaging(0.997) TCGA-G4-6627-01 6 131931290 131931290 C T MED23 Missense_Mutation p.G325R 0.09 tolerated(0.3) probably_damaging(1) TCGA-G4-6627-01 6 26250522 26250522 G A HIST1H3F Silent p.L104L 0.07 TCGA-G4-6627-01 6 2785304 2785304 G A WRNIP1 Missense_Mutation p.A596T 0.10 deleterious(0) probably_damaging(0.997) TCGA-G4-6627-01 6 46644510 46644510 G A SLC25A27 3'UTR 0.15 TCGA-G4-6627-01 6 88853768 88853768 C T CNR1 Missense_Mutation p.R409Q 0.07 tolerated(0.38) benign(0.178) TCGA-G4-6627-01 7 120385960 120385960 C T KCND2 Nonsense_Mutation p.R532* 0.10 TCGA-G4-6627-01 7 150417776 150417776 G A GIMAP1 Silent p.A228A 0.07 TCGA-G4-6627-01 7 1518465 1518465 C G INTS1 Missense_Mutation p.Q1462H 0.07 deleterious(0.03) benign(0.372) TCGA-G4-6627-01 7 31855724 31855724 C T PDE1C Missense_Mutation p.A603T 0.13 tolerated(0.68) benign(0.005) TCGA-G4-6627-01 7 62753163 62753163 G T ZNF733P RNA 0.05 TCGA-G4-6627-01 7 90895698 90895698 C T FZD1 Silent p.I501I 0.16 TCGA-G4-6627-01 7 95664986 95664986 C A DYNC1I1 Missense_Mutation p.A446D 0.05 tolerated(0.17) possibly_damaging(0.821) TCGA-G4-6627-01 7 99971104 99971104 C T PILRA 5'UTR 0.33 TCGA-G4-6627-01 8 146054916 146054916 G A ZNF7 Silent p.Q19Q 0.10 TCGA-G4-6627-01 8 1616605 1616605 G A DLGAP2 Missense_Mutation p.A561T 0.05 tolerated(0.3) probably_damaging(0.979) TCGA-G4-6627-01 8 41397443 41397443 C T GINS4 Missense_Mutation p.A135V 0.06 tolerated(0.11) benign(0) TCGA-G4-6627-01 8 42611610 42611610 C T CHRNA6 Silent p.T244T 0.15 TCGA-G4-6627-01 8 95265337 95265337 T A GEM Missense_Mutation p.D112V 0.04 tolerated(0.06) benign(0.14) TCGA-G4-6627-01 8 9610131 9610131 G A TNKS Missense_Mutation p.E1050K 0.11 deleterious(0) probably_damaging(0.987) TCGA-G4-6627-01 9 133805186 133805186 C A FIBCD1 Missense_Mutation p.R107L 0.12 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-G4-6627-01 9 134108988 134108988 C G NUP214 3'UTR 0.19 TCGA-G4-6627-01 9 137715276 137715276 G A COL5A1 Silent p.P1553P 0.16 TCGA-G4-6627-01 X 101623463 101623463 C T NXF2B Missense_Mutation p.R238H 0.17 tolerated(0.18) benign(0.206) TCGA-G4-6627-01 X 11206998 11206998 A C ARHGAP6 Silent p.S309S 0.28 TCGA-G4-6627-01 X 140995845 140995845 G T MAGEC1 Missense_Mutation p.L885F 0.32 deleterious(0.01) unknown(0) TCGA-G4-6627-01 X 31838176 31838176 C G DMD Missense_Mutation p.E2409Q 0.15 benign(0.02) TCGA-G4-6628-01 10 101502949 101502949 T - CUTC Frame_Shift_Del p.F79Lfs*2 0.19 TCGA-G4-6628-01 10 102743530 102743530 C A SEMA4G Missense_Mutation p.A725E 0.14 tolerated(0.53) benign(0.221) TCGA-G4-6628-01 10 103534517 103534517 G A FGF8 Silent p.N103N 0.34 TCGA-G4-6628-01 10 103542343 103542343 G A NPM3 Silent p.T72T 0.25 TCGA-G4-6628-01 10 103900371 103900371 G - PPRC1 Frame_Shift_Del p.G704Vfs*30 0.16 TCGA-G4-6628-01 10 103921314 103921314 T C NOLC1 Silent p.G581G 0.28 TCGA-G4-6628-01 10 104836923 104836923 G A CNNM2 Missense_Mutation p.E872K 0.31 deleterious(0.01) benign(0.121) TCGA-G4-6628-01 10 1070586 1070586 C A IDI2 Missense_Mutation p.E26D 0.22 tolerated(0.06) benign(0.001) TCGA-G4-6628-01 10 108923896 108923896 C - SORCS1 Frame_Shift_Del p.G130Efs*3 0.28 TCGA-G4-6628-01 10 112362642 112362642 G T SMC3 Missense_Mutation p.Q1119H 0.23 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 10 112559672 112559672 T A RBM20 Missense_Mutation p.L599H 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 10 115922316 115922316 T C C10orf118 Intron 0.24 TCGA-G4-6628-01 10 115958963 115958964 - A TDRD1 Frame_Shift_Ins p.L142Tfs*13 0.24 TCGA-G4-6628-01 10 116032511 116032511 G A VWA2 Silent p.T128T 0.22 TCGA-G4-6628-01 10 116887435 116887435 T - ATRNL1 Frame_Shift_Del p.F192Lfs*8 0.23 TCGA-G4-6628-01 10 117607446 117607446 C G ATRNL1 Missense_Mutation p.T1321S 0.26 tolerated(1) benign(0.042) TCGA-G4-6628-01 10 118310725 118310726 - T PNLIP Frame_Shift_Ins p.V149Cfs*2 0.21 TCGA-G4-6628-01 10 118896104 118896104 G A VAX1 Missense_Mutation p.T103M 0.41 deleterious(0.01) unknown(0) TCGA-G4-6628-01 10 119044584 119044584 G A PDZD8 Missense_Mutation p.P554S 0.21 tolerated_low_confidence(0.74) benign(0.005) TCGA-G4-6628-01 10 120354477 120354477 C T PRLHR Missense_Mutation p.V94M 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6628-01 10 12077504 12077504 T - UPF2 5'UTR 0.41 TCGA-G4-6628-01 10 120790508 120790508 T - NANOS1 3'UTR 0.15 TCGA-G4-6628-01 10 120801850 120801850 C T EIF3A Missense_Mutation p.R1061H 0.26 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-G4-6628-01 10 121275126 121275126 C T RGS10 Silent p.L98L 0.25 TCGA-G4-6628-01 10 121586377 121586377 T C INPP5F Silent p.D828D 0.21 TCGA-G4-6628-01 10 121586670 121586670 G T INPP5F Missense_Mutation p.G926V 0.23 tolerated_low_confidence(0.19) benign(0.04) TCGA-G4-6628-01 10 121586986 121586986 G A INPP5F Silent p.A1031A 0.32 TCGA-G4-6628-01 10 121591098 121591098 C A MCMBP Missense_Mutation p.S606I 0.23 deleterious(0) probably_damaging(0.95) TCGA-G4-6628-01 10 124598687 124598687 G A CUZD1 Silent p.S98S 0.21 TCGA-G4-6628-01 10 124922174 124922174 G A BUB3 Silent p.K267K 0.24 TCGA-G4-6628-01 10 124924499 124924499 T C BUB3 3'UTR 0.29 TCGA-G4-6628-01 10 126301922 126301922 A G LHPP Missense_Mutation p.D269G 0.36 tolerated_low_confidence(0.06) benign(0) TCGA-G4-6628-01 10 126450975 126450975 A - METTL10 Frame_Shift_Del p.C257Afs*67 0.19 TCGA-G4-6628-01 10 126715797 126715797 G A CTBP2 Nonsense_Mutation p.Q178* 0.16 TCGA-G4-6628-01 10 127429150 127429150 C T EDRF1 Silent p.S700S 0.40 TCGA-G4-6628-01 10 128973676 128973676 C T FAM196A Silent p.P328P 0.42 TCGA-G4-6628-01 10 129839198 129839198 G T PTPRE Missense_Mutation p.R18M 0.22 deleterious_low_confidence(0.02) benign(0.157) TCGA-G4-6628-01 10 129869125 129869125 G A PTPRE Silent p.P449P 0.21 TCGA-G4-6628-01 10 129902983 129902983 A - MKI67 Frame_Shift_Del p.L2374* 0.20 TCGA-G4-6628-01 10 131639170 131639170 C A EBF3 Missense_Mutation p.S491I 0.12 deleterious_low_confidence(0.01) benign(0.326) TCGA-G4-6628-01 10 131943578 131943578 G A GLRX3 Missense_Mutation p.V66M 0.12 deleterious(0.02) benign(0.267) TCGA-G4-6628-01 10 13217674 13217674 C T MCM10 Missense_Mutation p.R254W 0.34 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 10 133918388 133918388 G A JAKMIP3 Missense_Mutation p.E26K 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 10 134648222 134648222 C T TTC40 Missense_Mutation p.V2268I 0.33 tolerated(1) benign(0.002) TCGA-G4-6628-01 10 13655801 13655801 G A PRPF18 Missense_Mutation p.V214M 0.24 tolerated(0.21) possibly_damaging(0.528) TCGA-G4-6628-01 10 1405687 1405687 C A ADARB2 Missense_Mutation p.G205C 0.25 tolerated(0.21) benign(0.007) TCGA-G4-6628-01 10 17363321 17363321 T - ST8SIA6 Frame_Shift_Del p.A252Pfs*53 0.35 TCGA-G4-6628-01 10 24762604 24762604 G A KIAA1217 Missense_Mutation p.A432T 0.20 tolerated(0.57) possibly_damaging(0.72) TCGA-G4-6628-01 10 24909254 24909255 - T ARHGAP21 Frame_Shift_Ins p.Q524Tfs*10 0.19 TCGA-G4-6628-01 10 25314597 25314597 G A THNSL1 3'UTR 0.34 TCGA-G4-6628-01 10 26789885 26789885 C T APBB1IP Nonsense_Mutation p.Q100* 0.22 TCGA-G4-6628-01 10 27422982 27422982 T - YME1L1 Frame_Shift_Del p.N311Tfs*18 0.20 TCGA-G4-6628-01 10 27443206 27443206 G A YME1L1 5'UTR 0.27 TCGA-G4-6628-01 10 29762840 29762840 C T SVIL Missense_Mutation p.R1819Q 0.21 deleterious(0.03) probably_damaging(0.971) TCGA-G4-6628-01 10 29769363 29769363 G A SVIL Intron 0.28 TCGA-G4-6628-01 10 3149418 3149418 A - PFKP Frame_Shift_Del p.R265Gfs*2 0.25 TCGA-G4-6628-01 10 3150924 3150924 G A PFKP Missense_Mutation p.R301H 0.22 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 10 31816024 31816024 G A ZEB1 Silent p.E1070E 0.24 TCGA-G4-6628-01 10 50108303 50108303 C A WDFY4 Missense_Mutation p.S2492Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 10 50872908 50872908 C A CHAT Missense_Mutation p.T688N 0.29 tolerated(0.12) benign(0.004) TCGA-G4-6628-01 10 55566324 55566325 - T PCDH15 3'UTR 0.16 TCGA-G4-6628-01 10 55568856 55568858 CTT - PCDH15 In_Frame_Del p.E585del 0.21 TCGA-G4-6628-01 10 55569300 55569300 G A PCDH15 Missense_Mutation p.P438S 0.27 deleterious(0.05) unknown(0) TCGA-G4-6628-01 10 55582611 55582611 C T PCDH15 Silent p.L1627L 0.29 TCGA-G4-6628-01 10 61552616 61552616 G A CCDC6 3'UTR 0.25 TCGA-G4-6628-01 10 61829756 61829756 C A ANK3 Missense_Mutation p.R3628M 0.22 probably_damaging(0.984) TCGA-G4-6628-01 10 6504267 6504267 G A PRKCQ Silent p.Y502Y 0.25 TCGA-G4-6628-01 10 70043887 70043887 G T PBLD 3'UTR 0.29 TCGA-G4-6628-01 10 71690281 71690281 A G COL13A1 Silent p.K541K 0.18 TCGA-G4-6628-01 10 74692295 74692295 C T OIT3 3'UTR 0.24 TCGA-G4-6628-01 10 74806828 74806828 C T P4HA1 Missense_Mutation p.R311H 0.30 deleterious(0) possibly_damaging(0.796) TCGA-G4-6628-01 10 75406943 75406943 G - SYNPO2L Frame_Shift_Del p.Q823Rfs*25 0.31 TCGA-G4-6628-01 10 75613002 75613002 G A CAMK2G Missense_Mutation p.R75C 0.32 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-G4-6628-01 10 75871762 75871762 C T VCL Silent p.D947D 0.21 TCGA-G4-6628-01 10 76973810 76973811 AA - VDAC2 Frame_Shift_Del p.K60Vfs*14 0.19 TCGA-G4-6628-01 10 78646919 78646919 A G KCNMA1 3'Flank 0.29 TCGA-G4-6628-01 10 81070899 81070899 C T ZMIZ1 Silent p.A1018A 0.19 TCGA-G4-6628-01 10 81274720 81274720 A T EIF5AL1 3'UTR 0.26 TCGA-G4-6628-01 10 85992459 85992459 C A LRIT1 Missense_Mutation p.G366C 0.45 deleterious(0.02) possibly_damaging(0.682) TCGA-G4-6628-01 10 88911671 88911671 T A FAM35A Missense_Mutation p.I187N 0.28 deleterious(0) possibly_damaging(0.668) TCGA-G4-6628-01 10 90676554 90676554 C A STAMBPL1 Missense_Mutation p.L341I 0.25 tolerated(1) benign(0.446) TCGA-G4-6628-01 10 91352553 91352553 G T PANK1 Intron 0.27 TCGA-G4-6628-01 10 93999179 93999179 G A CPEB3 Missense_Mutation p.A310V 0.33 deleterious(0.01) benign(0.071) TCGA-G4-6628-01 10 94694090 94694090 T G EXOC6 Missense_Mutation p.I348S 0.26 deleterious(0) possibly_damaging(0.824) TCGA-G4-6628-01 10 95169488 95169488 C - MYOF Frame_Shift_Del p.E148Kfs*38 0.20 TCGA-G4-6628-01 10 96291203 96291203 A - TBC1D12 Frame_Shift_Del p.K750Nfs*9 0.25 TCGA-G4-6628-01 10 97816930 97816930 G A CCNJ Silent p.T222T 0.28 TCGA-G4-6628-01 10 99116740 99116740 C T RRP12 3'UTR 0.30 TCGA-G4-6628-01 10 99148099 99148099 C T RRP12 Silent p.T309T 0.31 TCGA-G4-6628-01 10 99416695 99416695 C T PI4K2A Missense_Mutation p.R266W 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 10 99623817 99623817 G A GOLGA7B Missense_Mutation p.C90Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 10 99656712 99656712 C A CRTAC1 Missense_Mutation p.E390D 0.20 tolerated(0.15) benign(0.004) TCGA-G4-6628-01 11 100126589 100126589 C T CNTN5 Silent p.I701I 0.33 TCGA-G4-6628-01 11 101325793 101325793 C A TRPC6 Missense_Mutation p.D842Y 0.27 deleterious(0.01) benign(0.429) TCGA-G4-6628-01 11 1020161 1020161 G - MUC6 Frame_Shift_Del p.P1246Lfs*47 0.17 TCGA-G4-6628-01 11 102668818 102668818 G A MMP1 Silent p.H2H 0.41 TCGA-G4-6628-01 11 103908038 103908038 G A DDI1 Missense_Mutation p.R163H 0.33 deleterious(0.01) benign(0.158) TCGA-G4-6628-01 11 10789538 10789538 G T CTR9 Missense_Mutation p.K624N 0.19 deleterious(0) benign(0.179) TCGA-G4-6628-01 11 108014720 108014720 C T ACAT1 Silent p.D317D 0.27 TCGA-G4-6628-01 11 108160424 108160425 - T ATM Frame_Shift_Ins p.V1446Cfs*2 0.18 TCGA-G4-6628-01 11 108180997 108180997 C T ATM Missense_Mutation p.A1958V 0.29 tolerated(0.18) benign(0.027) TCGA-G4-6628-01 11 108381238 108381238 C T EXPH5 Missense_Mutation p.V1666M 0.22 tolerated(0.27) benign(0.101) TCGA-G4-6628-01 11 1095269 1095269 C T MUC2 Missense_Mutation p.T2030M 0.33 unknown(0) TCGA-G4-6628-01 11 1098795 1098795 C T MUC2 Missense_Mutation p.R2389W 0.24 unknown(0) TCGA-G4-6628-01 11 110106915 110106915 G A RDX Missense_Mutation p.A418V 0.33 tolerated(0.07) possibly_damaging(0.521) TCGA-G4-6628-01 11 111622931 111622931 C A PPP2R1B Missense_Mutation p.R430S 0.35 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 11 111953142 111953142 G A C11orf57 Intron 0.24 TCGA-G4-6628-01 11 113631635 113631635 G A ZW10 Silent p.R82R 0.18 TCGA-G4-6628-01 11 113816683 113816683 C T HTR3B Nonsense_Mutation p.Q384* 0.22 TCGA-G4-6628-01 11 116767060 116767060 G A SIK3 Silent p.C200C 0.38 TCGA-G4-6628-01 11 117077409 117077409 G - PCSK7 Frame_Shift_Del p.N663Tfs*9 0.22 TCGA-G4-6628-01 11 118895781 118895781 C T SLC37A4 Missense_Mutation p.G399S 0.17 tolerated(0.05) possibly_damaging(0.726) TCGA-G4-6628-01 11 118944018 118944018 A C VPS11 Missense_Mutation p.D331A 0.13 tolerated(0.63) probably_damaging(0.945) TCGA-G4-6628-01 11 119182270 119182270 C T MCAM Silent p.R459R 0.19 TCGA-G4-6628-01 11 119549301 119549301 A G PVRL1 Missense_Mutation p.M85T 0.36 deleterious(0.01) possibly_damaging(0.84) TCGA-G4-6628-01 11 119998186 119998186 G A TRIM29 Missense_Mutation p.A331V 0.31 tolerated(0.18) probably_damaging(0.966) TCGA-G4-6628-01 11 120099761 120099761 C T OAF Silent p.G244G 0.28 TCGA-G4-6628-01 11 121038764 121038765 - T TECTA Frame_Shift_Ins p.N1864Qfs*8 0.15 TCGA-G4-6628-01 11 121426008 121426008 C T SORL1 Missense_Mutation p.A851V 0.27 deleterious(0.01) possibly_damaging(0.788) TCGA-G4-6628-01 11 122850134 122850134 C T BSX Silent p.P98P 0.32 TCGA-G4-6628-01 11 12315286 12315286 T C MICALCL Missense_Mutation p.L103P 0.11 tolerated(0.09) benign(0.02) TCGA-G4-6628-01 11 124489744 124489744 A G PANX3 Silent p.T364T 0.26 TCGA-G4-6628-01 11 124493050 124493050 A G TBRG1 Missense_Mutation p.K24R 0.38 tolerated(0.43) benign(0.015) TCGA-G4-6628-01 11 124751209 124751209 C - ROBO3 3'UTR 0.28 TCGA-G4-6628-01 11 124757372 124757372 C T ROBO4 Missense_Mutation p.A694T 0.33 tolerated(0.28) possibly_damaging(0.804) TCGA-G4-6628-01 11 124947130 124947130 G A SLC37A2 Missense_Mutation p.R49H 0.29 tolerated(0.11) possibly_damaging(0.635) TCGA-G4-6628-01 11 1250943 1250943 C T MUC5B Missense_Mutation p.H376Y 0.50 unknown(0) TCGA-G4-6628-01 11 126162853 126162853 C T TIRAP Silent p.S183S 0.39 TCGA-G4-6628-01 11 1264785 1264785 C A MUC5B Silent p.T2225T 0.28 TCGA-G4-6628-01 11 128781342 128781342 C T KCNJ5 Silent p.G58G 0.19 TCGA-G4-6628-01 11 129744801 129744801 A T NFRKB Missense_Mutation p.V647E 0.27 deleterious(0) unknown(0) TCGA-G4-6628-01 11 129993526 129993526 G A APLP2 Silent p.A314A 0.15 TCGA-G4-6628-01 11 130275442 130275443 - C ADAMTS8 3'UTR 0.26 TCGA-G4-6628-01 11 13378594 13378594 C - ARNTL Intron 0.21 TCGA-G4-6628-01 11 134239747 134239747 T C GLB1L2 Missense_Mutation p.M359T 0.27 tolerated(0.23) benign(0.009) TCGA-G4-6628-01 11 134253993 134253993 G A B3GAT1 Missense_Mutation p.R68C 0.37 deleterious(0) possibly_damaging(0.794) TCGA-G4-6628-01 11 14899787 14899788 - A CYP2R1 Frame_Shift_Ins p.T463Yfs*14 0.25 TCGA-G4-6628-01 11 17332814 17332815 - T NUCB2 Frame_Shift_Ins p.K251Qfs*4 0.19 TCGA-G4-6628-01 11 17416762 17416762 G A ABCC8 Silent p.I1456I 0.26 TCGA-G4-6628-01 11 18159273 18159273 C T MRGPRX3 Missense_Mutation p.T175M 0.21 tolerated(0.1) benign(0.233) TCGA-G4-6628-01 11 18505466 18505466 T - TSG101 Frame_Shift_Del p.K265Rfs*13 0.24 TCGA-G4-6628-01 11 18762242 18762242 G A PTPN5 Missense_Mutation p.R275C 0.27 deleterious(0) possibly_damaging(0.556) TCGA-G4-6628-01 11 20178708 20178708 G A DBX1 Silent p.L183L 0.17 TCGA-G4-6628-01 11 209326 209326 C T RIC8A Intron 0.23 TCGA-G4-6628-01 11 2154241 2154242 - G IGF2 Frame_Shift_Ins p.E230Rfs*50 0.23 TCGA-G4-6628-01 11 2186500 2186500 G A TH Silent p.F463F 0.24 TCGA-G4-6628-01 11 22248896 22248896 G A ANO5 Missense_Mutation p.E138K 0.27 tolerated(0.12) possibly_damaging(0.497) TCGA-G4-6628-01 11 2434365 2434365 G A TRPM5 Missense_Mutation p.R699W 0.22 tolerated(0.06) benign(0.004) TCGA-G4-6628-01 11 2608867 2608867 C - KCNQ1 Frame_Shift_Del p.R401Gfs*18 0.25 TCGA-G4-6628-01 11 26353794 26353794 C A ANO3 5'UTR 0.29 TCGA-G4-6628-01 11 27393911 27393911 C T LGR4 Missense_Mutation p.A472T 0.29 tolerated(0.06) benign(0.217) TCGA-G4-6628-01 11 2991116 2991116 C T NAP1L4 Missense_Mutation p.A151T 0.21 tolerated(0.47) benign(0.026) TCGA-G4-6628-01 11 30352754 30352754 A - ARL14EP Frame_Shift_Del p.N89Ifs*4 0.31 TCGA-G4-6628-01 11 32676507 32676507 T - CCDC73 Frame_Shift_Del p.A220Qfs*5 0.20 TCGA-G4-6628-01 11 33308762 33308762 C T HIPK3 Missense_Mutation p.R268C 0.29 deleterious(0) benign(0.002) TCGA-G4-6628-01 11 36598899 36598899 A - RAG1 3'UTR 0.13 TCGA-G4-6628-01 11 36599931 36599931 T - RAG1 3'UTR 0.27 TCGA-G4-6628-01 11 40136885 40136885 C T LRRC4C Missense_Mutation p.A320T 0.23 tolerated(0.15) benign(0.002) TCGA-G4-6628-01 11 4127420 4127420 A G RRM1 Missense_Mutation p.N85D 0.18 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-G4-6628-01 11 44959825 44959825 C T TP53I11 Missense_Mutation p.R21H 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 11 45204461 45204461 C - PRDM11 Frame_Shift_Del p.P93Rfs*40 0.18 TCGA-G4-6628-01 11 45672392 45672392 C T CHST1 Missense_Mutation p.A28T 0.19 tolerated(0.42) benign(0.002) TCGA-G4-6628-01 11 45893736 45893736 G A CRY2 Missense_Mutation p.R600Q 0.25 deleterious_low_confidence(0.02) benign(0.029) TCGA-G4-6628-01 11 47282868 47282869 - C NR1H3 Frame_Shift_Ins p.R195Qfs*31 0.22 TCGA-G4-6628-01 11 47308066 47308066 G A MADD Silent p.T878T 0.25 TCGA-G4-6628-01 11 47594576 47594576 G A KBTBD4 Missense_Mutation p.A504V 0.24 deleterious(0.04) benign(0.169) TCGA-G4-6628-01 11 48510865 48510866 - T OR4A47 Frame_Shift_Ins p.C177Lfs*2 0.20 TCGA-G4-6628-01 11 489907 489907 G A PTDSS2 Silent p.P380P 0.32 TCGA-G4-6628-01 11 5080198 5080198 C T OR52E2 Silent p.V220V 0.21 TCGA-G4-6628-01 11 51515448 51515448 C A OR4C46 Missense_Mutation p.P56H 0.27 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-G4-6628-01 11 5153615 5153615 G T OR52A5 Silent p.I86I 0.22 TCGA-G4-6628-01 11 5410685 5410685 G A OR51M1 Silent p.Q19Q 0.23 TCGA-G4-6628-01 11 551227 551228 - C LRRC56 Frame_Shift_Ins p.R244Afs*34 0.23 TCGA-G4-6628-01 11 55340359 55340359 C T OR4C16 Silent p.C252C 0.29 TCGA-G4-6628-01 11 55432869 55432869 C T OR4C6 Missense_Mutation p.A76V 0.27 tolerated_low_confidence(0.12) benign(0.025) TCGA-G4-6628-01 11 558069 558069 G - C11orf35 Intron 0.38 TCGA-G4-6628-01 11 55944875 55944875 A C OR5J2 Missense_Mutation p.Q261P 0.17 deleterious(0) probably_damaging(0.934) TCGA-G4-6628-01 11 55999585 55999585 T - OR5T2 Frame_Shift_Del p.K359Nfs*4 0.15 TCGA-G4-6628-01 11 5686351 5686352 - T TRIM5 Frame_Shift_Ins p.N390Kfs*2 0.23 TCGA-G4-6628-01 11 57003772 57003772 C T APLNR Missense_Mutation p.R236H 0.14 tolerated(0.1) benign(0.11) TCGA-G4-6628-01 11 57102080 57102080 T C SSRP1 Missense_Mutation p.K33E 0.29 deleterious(0) probably_damaging(0.927) TCGA-G4-6628-01 11 57176720 57176720 C T SLC43A3 Silent p.S433S 0.35 TCGA-G4-6628-01 11 57191485 57191485 C T SLC43A3 Missense_Mutation p.A111T 0.16 deleterious(0.01) possibly_damaging(0.865) TCGA-G4-6628-01 11 57958735 57958735 T C OR9Q2 Missense_Mutation p.M258T 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-G4-6628-01 11 57971197 57971197 A G OR1S2 Missense_Mutation p.F153L 0.27 tolerated(1) benign(0.002) TCGA-G4-6628-01 11 58126162 58126162 G A OR5B17 Silent p.P127P 0.27 TCGA-G4-6628-01 11 58343250 58343250 C A LPXN Intron 0.19 TCGA-G4-6628-01 11 59612874 59612874 G A GIF Missense_Mutation p.T18I 0.26 deleterious(0.01) possibly_damaging(0.529) TCGA-G4-6628-01 11 607462 607462 C A PHRF1 Missense_Mutation p.P668Q 0.20 deleterious(0) benign(0.376) TCGA-G4-6628-01 11 61106572 61106572 C T DAK Silent p.I76I 0.19 TCGA-G4-6628-01 11 61178509 61178509 A G CPSF7 Missense_Mutation p.L484P 0.17 deleterious_low_confidence(0.03) benign(0.003) TCGA-G4-6628-01 11 61595984 61595984 G A FADS2 Missense_Mutation p.R41H 0.36 deleterious(0.04) benign(0.189) TCGA-G4-6628-01 11 62417264 62417264 A G INTS5 Silent p.P96P 0.21 TCGA-G4-6628-01 11 62444389 62444389 C T UBXN1 Missense_Mutation p.R247H 0.20 deleterious(0.02) possibly_damaging(0.813) TCGA-G4-6628-01 11 6261925 6261925 C T CNGA4 Missense_Mutation p.R301W 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-G4-6628-01 11 62863464 62863464 T C SLC22A24 Missense_Mutation p.R357G 0.14 deleterious(0.02) benign(0.009) TCGA-G4-6628-01 11 6291978 6291978 C T CCKBR Silent p.D252D 0.29 TCGA-G4-6628-01 11 62948149 62948149 A G SLC22A25 Silent p.C351C 0.09 TCGA-G4-6628-01 11 63764690 63764690 C T OTUB1 Missense_Mutation p.R198W 0.37 tolerated(0.05) benign(0.051) TCGA-G4-6628-01 11 6417019 6417019 G A APBB1 Silent p.C652C 0.19 TCGA-G4-6628-01 11 64521067 64521067 C T PYGM Missense_Mutation p.A443T 0.39 deleterious(0) probably_damaging(0.91) TCGA-G4-6628-01 11 64559487 64559487 C T MAP4K2 Silent p.P662P 0.25 TCGA-G4-6628-01 11 6458683 6458683 G T HPX Silent p.P230P 0.26 TCGA-G4-6628-01 11 6461701 6461701 A - HPX Frame_Shift_Del p.F70Lfs*16 0.19 TCGA-G4-6628-01 11 64668487 64668487 C T ATG2A Silent p.P1399P 0.33 TCGA-G4-6628-01 11 64821807 64821807 C T NAALADL1 Missense_Mutation p.A303T 0.17 deleterious(0.02) probably_damaging(0.917) TCGA-G4-6628-01 11 64824848 64824848 C - NAALADL1 Frame_Shift_Del p.A200Pfs*4 0.19 TCGA-G4-6628-01 11 65361321 65361321 G A KCNK7 Missense_Mutation p.S115L 0.39 deleterious(0) probably_damaging(0.919) TCGA-G4-6628-01 11 65384462 65384462 G C PCNXL3 Missense_Mutation p.Q107H 0.39 tolerated(0.25) benign(0) TCGA-G4-6628-01 11 65403667 65403667 G A PCNXL3 Missense_Mutation p.G1828S 0.16 tolerated(0.19) possibly_damaging(0.885) TCGA-G4-6628-01 11 65561520 65561520 C T OVOL1 Missense_Mutation p.P40L 0.34 tolerated(0.16) benign(0.001) TCGA-G4-6628-01 11 65630911 65630911 A G MUS81 Silent p.P259P 0.30 TCGA-G4-6628-01 11 65684944 65684944 C T C11orf68 Missense_Mutation p.V290M 0.21 tolerated_low_confidence(0.06) benign(0.146) TCGA-G4-6628-01 11 65746387 65746387 T C SART1 Splice_Site p.X795_splice 0.21 TCGA-G4-6628-01 11 66026291 66026291 C T KLC2 Nonsense_Mutation p.Q76* 0.40 TCGA-G4-6628-01 11 66113575 66113575 C T B3GNT1 Missense_Mutation p.R398H 0.37 deleterious(0) possibly_damaging(0.689) TCGA-G4-6628-01 11 6644441 6644441 C T DCHS1 Silent p.V2822V 0.27 TCGA-G4-6628-01 11 6651348 6651348 C T DCHS1 Silent p.P1559P 0.66 TCGA-G4-6628-01 11 6661488 6661488 G A DCHS1 Missense_Mutation p.R453W 0.18 tolerated(0.13) probably_damaging(0.998) TCGA-G4-6628-01 11 66627476 66627476 C T LRFN4 Missense_Mutation p.P573L 0.38 deleterious(0.01) benign(0.047) TCGA-G4-6628-01 11 67377852 67377852 G A NDUFV1 Missense_Mutation p.V171M 0.21 tolerated_low_confidence(0.16) benign(0.152) TCGA-G4-6628-01 11 68204433 68204433 C T LRP5 Silent p.P1359P 0.45 TCGA-G4-6628-01 11 68337327 68337327 G A PPP6R3 Missense_Mutation p.D414N 0.27 tolerated(0.28) benign(0.027) TCGA-G4-6628-01 11 68542898 68542898 G A CPT1A Silent p.Y487Y 0.21 TCGA-G4-6628-01 11 70007371 70007371 G A ANO1 Silent p.R561R 0.30 TCGA-G4-6628-01 11 70017119 70017119 C T ANO1 Missense_Mutation p.P775L 0.26 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 11 7021676 7021676 G T ZNF214 Missense_Mutation p.S413Y 0.25 tolerated(0.06) probably_damaging(0.992) TCGA-G4-6628-01 11 70218325 70218325 T C PPFIA1 Missense_Mutation p.L957P 0.23 deleterious(0) probably_damaging(0.979) TCGA-G4-6628-01 11 7021845 7021845 G A ZNF214 Missense_Mutation p.P357S 0.49 deleterious(0.02) probably_damaging(0.996) TCGA-G4-6628-01 11 71932615 71932615 G A FOLR2 Missense_Mutation p.V193I 0.22 tolerated(0.1) possibly_damaging(0.457) TCGA-G4-6628-01 11 72289292 72289292 G A PDE2A Missense_Mutation p.A867V 0.22 tolerated(0.21) benign(0.224) TCGA-G4-6628-01 11 72290360 72290360 C T PDE2A Missense_Mutation p.R775H 0.13 deleterious(0) probably_damaging(0.987) TCGA-G4-6628-01 11 72295981 72295981 C T PDE2A Missense_Mutation p.V432M 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-G4-6628-01 11 72424252 72424252 G A ARAP1 Missense_Mutation p.P239L 0.22 tolerated(0.52) benign(0.005) TCGA-G4-6628-01 11 72945452 72945452 C T P2RY2 Missense_Mutation p.A83V 0.34 tolerated(1) benign(0.012) TCGA-G4-6628-01 11 73073232 73073232 G A ARHGEF17 Missense_Mutation p.A1548T 0.29 deleterious(0.02) possibly_damaging(0.753) TCGA-G4-6628-01 11 73881910 73881910 C - C2CD3 5'UTR 0.17 TCGA-G4-6628-01 11 74336521 74336521 G A POLD3 Missense_Mutation p.V268M 0.25 tolerated(0.11) benign(0.11) TCGA-G4-6628-01 11 74638465 74638465 C T XRRA1 Missense_Mutation p.V157M 0.15 tolerated(0.08) probably_damaging(0.987) TCGA-G4-6628-01 11 7669710 7669710 G T PPFIBP2 Missense_Mutation p.R580M 0.24 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 11 77412284 77412285 - T RSF1 Frame_Shift_Ins p.V664Sfs*11 0.15 TCGA-G4-6628-01 11 78154734 78154734 T C NARS2 Missense_Mutation p.Y412C 0.20 deleterious(0.01) benign(0.078) TCGA-G4-6628-01 11 7982110 7982110 G A NLRP10 Missense_Mutation p.A350V 0.23 tolerated(0.58) benign(0.114) TCGA-G4-6628-01 11 8120326 8120326 G A TUB Silent p.K395K 0.19 TCGA-G4-6628-01 11 8122413 8122413 C T TUB Missense_Mutation p.T474M 0.17 tolerated(1) benign(0.029) TCGA-G4-6628-01 11 82443480 82443480 G A FAM181B 3'UTR 0.26 TCGA-G4-6628-01 11 8251976 8251976 C T LMO1 Missense_Mutation p.R34H 0.26 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 11 82877662 82877662 A G PCF11 Missense_Mutation p.T575A 0.26 tolerated(0.42) benign(0) TCGA-G4-6628-01 11 8642673 8642673 C T TRIM66 Missense_Mutation p.V1004I 0.36 deleterious(0) benign(0.424) TCGA-G4-6628-01 11 86521682 86521683 - T PRSS23 3'UTR 0.19 TCGA-G4-6628-01 11 86663452 86663452 G A FZD4 Missense_Mutation p.P116S 0.23 tolerated(0.07) probably_damaging(0.996) TCGA-G4-6628-01 11 88068234 88068234 T - CTSC Frame_Shift_Del p.V64* 0.20 TCGA-G4-6628-01 11 88300452 88300452 A G GRM5 Missense_Mutation p.I800T 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-G4-6628-01 11 89106611 89106611 C T NOX4 Missense_Mutation p.G375E 0.09 deleterious(0) probably_damaging(0.948) TCGA-G4-6628-01 11 89392715 89392715 G A FOLH1B RNA 0.30 TCGA-G4-6628-01 11 89885496 89885496 G T NAALAD2 Nonsense_Mutation p.G214* 0.11 TCGA-G4-6628-01 11 9047361 9047361 G T SCUBE2 Silent p.T857T 0.28 TCGA-G4-6628-01 11 93837908 93837908 G T HEPHL1 Missense_Mutation p.R966I 0.21 deleterious(0.04) benign(0.009) TCGA-G4-6628-01 11 94730807 94730807 A - KDM4D Frame_Shift_Del p.K93Rfs*4 0.32 TCGA-G4-6628-01 11 94861563 94861563 T C ENDOD1 Missense_Mutation p.L108P 0.24 tolerated(0.07) probably_damaging(0.975) TCGA-G4-6628-01 11 95561127 95561127 G A CEP57 Missense_Mutation p.G355S 0.27 tolerated(1) benign(0.012) TCGA-G4-6628-01 11 9761849 9761849 G A SWAP70 Missense_Mutation p.R437K 0.45 tolerated(0.64) benign(0.001) TCGA-G4-6628-01 12 100441920 100441920 C T UHRF1BP1L Missense_Mutation p.R1258K 0.24 deleterious(0.03) benign(0.021) TCGA-G4-6628-01 12 100790171 100790171 C A SLC17A8 Silent p.R218R 0.23 TCGA-G4-6628-01 12 102071094 102071094 C T MYBPC1 Missense_Mutation p.R1004W 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 12 1025529 1025529 C T RAD52 Silent p.P282P 0.22 TCGA-G4-6628-01 12 104396914 104396914 G A GLT8D2 Nonsense_Mutation p.R95* 0.20 TCGA-G4-6628-01 12 104742189 104742189 G A TXNRD1 Missense_Mutation p.C647Y 0.31 deleterious(0) possibly_damaging(0.54) TCGA-G4-6628-01 12 105527572 105527573 TG - KIAA1033 Frame_Shift_Del p.V409Efs*13 0.22 TCGA-G4-6628-01 12 10562101 10562101 T C KLRC4 Missense_Mutation p.K25R 0.29 tolerated(0.06) probably_damaging(0.987) TCGA-G4-6628-01 12 10762440 10762440 A C MAGOHB Missense_Mutation p.V85G 0.33 tolerated(0.22) possibly_damaging(0.59) TCGA-G4-6628-01 12 10772761 10772761 G A STYK1 Silent p.Y417Y 0.11 TCGA-G4-6628-01 12 109052548 109052548 C T CORO1C Missense_Mutation p.R199K 0.23 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 12 10959364 10959364 G A TAS2R8 Silent p.N72N 0.22 TCGA-G4-6628-01 12 109702117 109702118 - ACC ACACB In_Frame_Ins p.H2291dup 0.19 TCGA-G4-6628-01 12 110456190 110456190 C T ANKRD13A Silent p.R147R 0.33 TCGA-G4-6628-01 12 110974889 110974889 C T PPTC7 Missense_Mutation p.D290N 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6628-01 12 111785948 111785948 C - CUX2 Frame_Shift_Del p.P1429Lfs*23 0.26 TCGA-G4-6628-01 12 113425064 113425064 A - OAS2 Frame_Shift_Del p.N135Ifs*15 0.21 TCGA-G4-6628-01 12 113542046 113542046 C T RASAL1 Missense_Mutation p.A631T 0.24 tolerated(0.17) benign(0.38) TCGA-G4-6628-01 12 113759105 113759105 G A SLC8B1 Missense_Mutation p.R69W 0.20 deleterious(0.02) possibly_damaging(0.841) TCGA-G4-6628-01 12 113909167 113909167 C T LHX5 Missense_Mutation p.R46H 0.34 deleterious(0) probably_damaging(0.99) TCGA-G4-6628-01 12 114261020 114261020 G A RBM19 3'UTR 0.23 TCGA-G4-6628-01 12 117672544 117672544 G A NOS1 Missense_Mutation p.R1055C 0.29 deleterious(0.01) probably_damaging(0.923) TCGA-G4-6628-01 12 119419697 119419697 G A SRRM4 Missense_Mutation p.V4I 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6628-01 12 12037509 12037509 G T ETV6 Missense_Mutation p.W380C 0.15 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 12 120595663 120595663 C T GCN1L1 Missense_Mutation p.R1026Q 0.23 benign(0.046) TCGA-G4-6628-01 12 120954401 120954401 C T COQ5 Silent p.K181K 0.22 TCGA-G4-6628-01 12 121435531 121435531 G - HNF1A Intron 0.19 TCGA-G4-6628-01 12 1219425 1219425 C T ERC1 Missense_Mutation p.S410L 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-G4-6628-01 12 122092248 122092248 C G MORN3 Missense_Mutation p.S132T 0.28 tolerated(0.36) benign(0.024) TCGA-G4-6628-01 12 123687923 123687923 C T MPHOSPH9 Splice_Site p.X247_splice 0.25 TCGA-G4-6628-01 12 124411342 124411342 T C DNAH10 Missense_Mutation p.L3909P 0.17 probably_damaging(0.997) TCGA-G4-6628-01 12 124416253 124416253 G A DNAH10 Missense_Mutation p.M4211I 0.25 benign(0.002) TCGA-G4-6628-01 12 124862915 124862915 C T NCOR2 Missense_Mutation p.A679T 0.27 unknown(0) TCGA-G4-6628-01 12 124941663 124941663 G - NCOR2 Frame_Shift_Del p.Q251Rfs*22 0.20 TCGA-G4-6628-01 12 124950753 124950753 C T NCOR2 Missense_Mutation p.R224H 0.35 unknown(0) TCGA-G4-6628-01 12 125455946 125455946 G A DHX37 Missense_Mutation p.R365W 0.17 deleterious(0) probably_damaging(0.93) TCGA-G4-6628-01 12 128899980 128899980 G A TMEM132C Silent p.T263T 0.30 TCGA-G4-6628-01 12 130184677 130184677 C T TMEM132D Missense_Mutation p.V216M 0.26 tolerated(0.24) benign(0.01) TCGA-G4-6628-01 12 130883660 130883660 G A RIMBP2 3'UTR 0.21 TCGA-G4-6628-01 12 131471765 131471765 G A GPR133 Missense_Mutation p.V206I 0.34 tolerated_low_confidence(0.24) benign(0.009) TCGA-G4-6628-01 12 132624449 132624449 G A DDX51 Missense_Mutation p.A599V 0.23 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 12 132905735 132905735 C T RP13-895J2.7 5'Flank 0.36 TCGA-G4-6628-01 12 133241998 133241998 G A POLE Silent p.G786G 0.31 TCGA-G4-6628-01 12 133373206 133373206 C T GOLGA3 Silent p.R673R 0.27 TCGA-G4-6628-01 12 14941976 14941976 G T WBP11 Silent p.P467P 0.17 TCGA-G4-6628-01 12 15262114 15262114 G A RERG Missense_Mutation p.T177M 0.29 deleterious(0.05) benign(0.183) TCGA-G4-6628-01 12 18891488 18891488 C A CAPZA3 Missense_Mutation p.L96M 0.30 tolerated(0.2) probably_damaging(0.927) TCGA-G4-6628-01 12 20522722 20522723 - G PDE3A Frame_Shift_Ins p.E171Gfs*49 0.19 TCGA-G4-6628-01 12 21353578 21353578 G A SLCO1B1 Silent p.Q369Q 0.19 TCGA-G4-6628-01 12 21995369 21995369 T A ABCC9 Missense_Mutation p.T1118S 0.22 tolerated(0.24) benign(0.008) TCGA-G4-6628-01 12 23893816 23893816 C T SOX5 Silent p.K242K 0.16 TCGA-G4-6628-01 12 26383979 26383979 G A SSPN Silent p.T234T 0.17 TCGA-G4-6628-01 12 26749830 26749830 C T ITPR2 Missense_Mutation p.D1414N 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-G4-6628-01 12 2714875 2714875 C T CACNA1C Missense_Mutation p.R1047W 0.25 deleterious(0) probably_damaging(0.99) TCGA-G4-6628-01 12 30862938 30862938 G C CAPRIN2 Silent p.L1044L 0.21 TCGA-G4-6628-01 12 31236811 31236811 G A DDX11 Missense_Mutation p.R70H 0.29 tolerated(0.13) benign(0.009) TCGA-G4-6628-01 12 34179308 34179308 T - ALG10 Frame_Shift_Del p.S296Hfs*23 0.19 TCGA-G4-6628-01 12 3702435 3702435 C A PRMT8 3'UTR 0.33 TCGA-G4-6628-01 12 39242389 39242390 - A CPNE8 Frame_Shift_Ins p.E88* 0.16 TCGA-G4-6628-01 12 40076752 40076752 T C C12orf40 Silent p.T342T 0.16 TCGA-G4-6628-01 12 40422283 40422283 C T SLC2A13 Missense_Mutation p.A249T 0.25 deleterious(0) probably_damaging(0.973) TCGA-G4-6628-01 12 45815022 45815022 C T ANO6 Missense_Mutation p.P817S 0.21 tolerated(0.19) benign(0.014) TCGA-G4-6628-01 12 46245712 46245712 C T ARID2 Missense_Mutation p.P1269L 0.32 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-G4-6628-01 12 46342305 46342306 - T SCAF11 Frame_Shift_Ins p.Q105Tfs*11 0.17 TCGA-G4-6628-01 12 4723001 4723002 - T DYRK4 3'UTR 0.31 TCGA-G4-6628-01 12 4766978 4766978 A G NDUFA9 Missense_Mutation p.N128S 0.22 deleterious(0.02) possibly_damaging(0.764) TCGA-G4-6628-01 12 49073603 49073603 C T KANSL2 Missense_Mutation p.A89T 0.19 tolerated(0.15) possibly_damaging(0.61) TCGA-G4-6628-01 12 4920578 4920578 C A KCNA6 Silent p.I457I 0.27 TCGA-G4-6628-01 12 49391020 49391020 G A DDN Missense_Mutation p.R547C 0.35 deleterious_low_confidence(0) benign(0.004) TCGA-G4-6628-01 12 49432773 49432773 C A KMT2D Splice_Site p.X2789_splice 0.39 TCGA-G4-6628-01 12 49443667 49443667 C - KMT2D Frame_Shift_Del p.G1235Vfs*95 0.32 TCGA-G4-6628-01 12 50035763 50035763 G A PRPF40B Missense_Mutation p.A614T 0.25 deleterious(0.03) possibly_damaging(0.907) TCGA-G4-6628-01 12 5021440 5021440 T - KCNA1 Frame_Shift_Del p.F300Lfs*24 0.13 TCGA-G4-6628-01 12 50474388 50474388 C G ASIC1 Missense_Mutation p.T438R 0.29 tolerated_low_confidence(0.61) benign(0.014) TCGA-G4-6628-01 12 50571522 50571522 G - LIMA1 Frame_Shift_Del p.T537Lfs*38 0.22 TCGA-G4-6628-01 12 5154014 5154014 G A KCNA5 Missense_Mutation p.R234H 0.33 deleterious(0) probably_damaging(0.971) TCGA-G4-6628-01 12 51723534 51723534 G A CELA1 Silent p.G231G 0.36 TCGA-G4-6628-01 12 52309066 52309066 C T ACVRL1 Missense_Mutation p.T277M 0.23 deleterious(0.04) probably_damaging(1) TCGA-G4-6628-01 12 52467630 52467630 C T C12orf44 Missense_Mutation p.R66C 0.21 tolerated(0.21) benign(0.126) TCGA-G4-6628-01 12 52699062 52699062 C T KRT86 Silent p.S258S 0.15 TCGA-G4-6628-01 12 52774233 52774233 G A KRT84 Silent p.C446C 0.31 TCGA-G4-6628-01 12 52795110 52795110 C T KRT82 Missense_Mutation p.R215H 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-G4-6628-01 12 52840951 52840951 G T KRT6B 3'UTR 0.24 TCGA-G4-6628-01 12 52845768 52845768 C A KRT6B Missense_Mutation p.G32V 0.18 deleterious(0.04) unknown(0) TCGA-G4-6628-01 12 53207859 53207859 C T KRT4 5'UTR 0.35 TCGA-G4-6628-01 12 53819026 53819026 G A AMHR2 Missense_Mutation p.A168T 0.21 tolerated(0.11) possibly_damaging(0.483) TCGA-G4-6628-01 12 54447778 54447778 G A HOXC4 Silent p.S24S 0.23 TCGA-G4-6628-01 12 54902287 54902287 T C NCKAP1L Missense_Mutation p.C160R 0.27 tolerated(0.09) benign(0.094) TCGA-G4-6628-01 12 56090792 56090792 A G ITGA7 Missense_Mutation p.V547A 0.29 tolerated(0.14) probably_damaging(0.985) TCGA-G4-6628-01 12 56335971 56335971 G T DGKA Missense_Mutation p.L450F 0.24 tolerated(0.66) benign(0.069) TCGA-G4-6628-01 12 56397713 56397713 T C SUOX Silent p.P180P 0.22 TCGA-G4-6628-01 12 56552488 56552488 G A MYL6 Silent p.Q8Q 0.19 TCGA-G4-6628-01 12 56555208 56555208 C T MYL6 3'UTR 0.39 TCGA-G4-6628-01 12 56563345 56563345 C T SMARCC2 Missense_Mutation p.A864T 0.21 deleterious(0.04) benign(0.312) TCGA-G4-6628-01 12 56600197 56600197 T - RNF41 3'UTR 0.33 TCGA-G4-6628-01 12 56625323 56625323 G T SLC39A5 Missense_Mutation p.A89S 0.33 tolerated(0.77) benign(0.007) TCGA-G4-6628-01 12 56630407 56630407 C T SLC39A5 Missense_Mutation p.P362S 0.18 tolerated(0.44) benign(0.026) TCGA-G4-6628-01 12 56637844 56637844 G A ANKRD52 Missense_Mutation p.A960V 0.18 tolerated(0.09) benign(0.171) TCGA-G4-6628-01 12 56750273 56750273 G A STAT2 Missense_Mutation p.P28L 0.30 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 12 57036251 57036251 G T ATP5B Silent p.T355T 0.32 TCGA-G4-6628-01 12 57110132 57110132 C A NACA Intron 0.21 TCGA-G4-6628-01 12 57327751 57327751 C T SDR9C7 Missense_Mutation p.E99K 0.22 deleterious(0.02) benign(0.195) TCGA-G4-6628-01 12 57390030 57390030 C T GPR182 Missense_Mutation p.A346V 0.24 tolerated(0.09) benign(0.006) TCGA-G4-6628-01 12 57484976 57484976 G A NAB2 Missense_Mutation p.R51H 0.33 deleterious(0) probably_damaging(0.99) TCGA-G4-6628-01 12 57548454 57548454 G T LRP1 Missense_Mutation p.K399N 0.33 possibly_damaging(0.584) TCGA-G4-6628-01 12 57573255 57573255 C T LRP1 Missense_Mutation p.R1628C 0.18 probably_damaging(1) TCGA-G4-6628-01 12 57944152 57944152 T - KIF5A Frame_Shift_Del p.F34Sfs*72 0.29 TCGA-G4-6628-01 12 58006724 58006724 A G ARHGEF25 Missense_Mutation p.I76V 0.24 tolerated(0.85) benign(0.004) TCGA-G4-6628-01 12 58151759 58151759 C T MARCH9 Intron 0.25 TCGA-G4-6628-01 12 58156861 58156861 C T CYP27B1 3'UTR 0.24 TCGA-G4-6628-01 12 58200182 58200182 C T AVIL Silent p.L544L 0.23 TCGA-G4-6628-01 12 59271482 59271483 - A LRIG3 Frame_Shift_Ins p.A746Cfs*16 0.21 TCGA-G4-6628-01 12 62147480 62147480 C G FAM19A2 Missense_Mutation p.E103Q 0.22 deleterious(0.04) benign(0.098) TCGA-G4-6628-01 12 62931017 62931017 G A MON2 Missense_Mutation p.A663T 0.10 tolerated(0.28) benign(0.005) TCGA-G4-6628-01 12 62954674 62954674 T - MON2 Frame_Shift_Del p.T1274Qfs*3 0.26 TCGA-G4-6628-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.15 TCGA-G4-6628-01 12 63544481 63544481 G A AVPR1A Missense_Mutation p.R46C 0.32 deleterious(0) probably_damaging(0.938) TCGA-G4-6628-01 12 63544540 63544540 C T AVPR1A Missense_Mutation p.G26D 0.37 tolerated(0.19) benign(0.001) TCGA-G4-6628-01 12 64878273 64878274 - A TBK1 Frame_Shift_Ins p.I397Nfs*5 0.17 TCGA-G4-6628-01 12 66704374 66704374 T C HELB Missense_Mutation p.Y556H 0.21 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 12 6748204 6748204 C T ACRBP Splice_Site p.X476_splice 0.13 TCGA-G4-6628-01 12 67691383 67691383 A T CAND1 Missense_Mutation p.T230S 0.18 tolerated(0.24) benign(0.033) TCGA-G4-6628-01 12 68054152 68054159 AGGTTTGA GGTTTG DYRK2 3'UTR 0.13 TCGA-G4-6628-01 12 6879039 6879039 C T PTMS Intron 0.26 TCGA-G4-6628-01 12 6925418 6925418 G T CD4 Missense_Mutation p.Q268H 0.29 tolerated(0.2) possibly_damaging(0.672) TCGA-G4-6628-01 12 6940998 6940998 C T LEPREL2 Missense_Mutation p.R377C 0.17 deleterious(0.03) possibly_damaging(0.707) TCGA-G4-6628-01 12 7045138 7045138 G T ATN1 Missense_Mutation p.K236N 0.35 benign(0.021) TCGA-G4-6628-01 12 70824289 70824289 C T KCNMB4 Silent p.R163R 0.28 TCGA-G4-6628-01 12 7090313 7090313 G A LPCAT3 Missense_Mutation p.A177V 0.23 tolerated(0.06) benign(0.361) TCGA-G4-6628-01 12 72013843 72013843 A G ZFC3H1 Silent p.L1638L 0.26 TCGA-G4-6628-01 12 7288819 7288819 G A CLSTN3 Missense_Mutation p.E254K 0.20 deleterious(0.01) benign(0.217) TCGA-G4-6628-01 12 7293896 7293896 T A CLSTN3 Missense_Mutation p.L461H 0.37 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 12 73015473 73015473 C T TRHDE Missense_Mutation p.H828Y 0.18 deleterious(0) possibly_damaging(0.449) TCGA-G4-6628-01 12 7805115 7805115 A - APOBEC1 Frame_Shift_Del p.W121Gfs*19 0.20 TCGA-G4-6628-01 12 78400625 78400625 C T NAV3 Missense_Mutation p.T436I 0.20 tolerated(0.05) benign(0.028) TCGA-G4-6628-01 12 78444910 78444910 T C NAV3 Silent p.T833T 0.25 TCGA-G4-6628-01 12 78515857 78515857 G C NAV3 Missense_Mutation p.G1296A 0.26 tolerated(0.24) probably_damaging(1) TCGA-G4-6628-01 12 8074041 8074041 C T SLC2A3 Missense_Mutation p.E487K 0.14 tolerated(0.47) benign(0.001) TCGA-G4-6628-01 12 8075422 8075422 C T SLC2A3 Missense_Mutation p.A423T 0.18 deleterious(0.01) probably_damaging(0.929) TCGA-G4-6628-01 12 8205480 8205480 G A FOXJ2 3'UTR 0.28 TCGA-G4-6628-01 12 82796865 82796865 G A METTL25 Missense_Mutation p.C412Y 0.20 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 12 8290962 8290962 G A CLEC4A 3'UTR 0.38 TCGA-G4-6628-01 12 83444732 83444732 A - TMTC2 Frame_Shift_Del p.A737Qfs*4 0.19 TCGA-G4-6628-01 12 8813489 8813489 T C MFAP5 Missense_Mutation p.I22V 0.22 tolerated(0.37) benign(0.123) TCGA-G4-6628-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.22 TCGA-G4-6628-01 12 88570055 88570055 G T TMTC3 Missense_Mutation p.R464I 0.24 tolerated(0.08) benign(0.012) TCGA-G4-6628-01 12 88589493 88589493 G T TMTC3 3'UTR 0.29 TCGA-G4-6628-01 12 89743269 89743269 A G DUSP6 Missense_Mutation p.V303A 0.19 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 12 89744388 89744388 A - DUSP6 Frame_Shift_Del p.F272Sfs*8 0.24 TCGA-G4-6628-01 12 89745469 89745469 C T DUSP6 Silent p.G116G 0.37 TCGA-G4-6628-01 12 89918379 89918379 G T GALNT4 5'UTR 0.18 TCGA-G4-6628-01 12 91498074 91498074 G A LUM Silent p.C295C 0.21 TCGA-G4-6628-01 12 9311145 9311145 G A PZP Silent p.F1055F 0.27 TCGA-G4-6628-01 12 9346768 9346768 C T PZP Missense_Mutation p.A387T 0.26 tolerated(0.43) benign(0.198) TCGA-G4-6628-01 12 93804913 93804913 C T UBE2N Missense_Mutation p.A65T 0.21 tolerated(0.19) benign(0.025) TCGA-G4-6628-01 12 95604380 95604380 G T FGD6 Missense_Mutation p.P227H 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.77) TCGA-G4-6628-01 12 95869918 95869918 G A METAP2 Missense_Mutation p.A75T 0.34 tolerated_low_confidence(0.36) benign(0.003) TCGA-G4-6628-01 12 96387893 96387893 A G HAL Missense_Mutation p.L129S 0.39 deleterious(0) probably_damaging(0.991) TCGA-G4-6628-01 12 97338441 97338441 G A NEDD1 Missense_Mutation p.A515T 0.18 tolerated(0.38) benign(0.008) TCGA-G4-6628-01 13 103268773 103268773 C A TPP2 Missense_Mutation p.P140T 0.24 tolerated(0.13) possibly_damaging(0.796) TCGA-G4-6628-01 13 103268787 103268787 G A TPP2 Silent p.V144V 0.24 TCGA-G4-6628-01 13 103381961 103381961 G T CCDC168 Missense_Mutation p.P2400H 0.29 deleterious(0) unknown(0) TCGA-G4-6628-01 13 103460035 103460035 G A BIVM-ERCC5 Missense_Mutation p.A112T 0.25 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-G4-6628-01 13 108861311 108861311 G A LIG4 Missense_Mutation p.T769I 0.26 tolerated(0.23) possibly_damaging(0.459) TCGA-G4-6628-01 13 108955898 108955898 C T TNFSF13B Nonsense_Mutation p.R231* 0.16 TCGA-G4-6628-01 13 111111152 111111152 C T COL4A2 Silent p.D489D 0.39 TCGA-G4-6628-01 13 111114660 111114660 G T COL4A2 Missense_Mutation p.G569W 0.21 probably_damaging(1) TCGA-G4-6628-01 13 111117887 111117887 G A COL4A2 Missense_Mutation p.A638T 0.35 benign(0.019) TCGA-G4-6628-01 13 111117928 111117928 C T COL4A2 Silent p.G651G 0.27 TCGA-G4-6628-01 13 112724555 112724555 C T SOX1 3'UTR 0.24 TCGA-G4-6628-01 13 113140326 113140326 C T TUBGCP3 Missense_Mutation p.R902Q 0.22 deleterious(0.01) possibly_damaging(0.556) TCGA-G4-6628-01 13 113170841 113170841 G T TUBGCP3 Missense_Mutation p.L667I 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6628-01 13 113699172 113699172 C T MCF2L Intron 0.21 TCGA-G4-6628-01 13 113834546 113834546 C A PCID2 Splice_Site p.X317_splice 0.32 TCGA-G4-6628-01 13 114018095 114018095 C T GRTP1 Missense_Mutation p.V55I 0.34 tolerated(0.25) benign(0.021) TCGA-G4-6628-01 13 114309223 114309223 C T ATP4B Silent p.V49V 0.39 TCGA-G4-6628-01 13 114784334 114784334 G T RASA3 Missense_Mutation p.L283M 0.29 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 13 19752430 19752430 C T TUBA3C Missense_Mutation p.G111S 0.24 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-G4-6628-01 13 20796917 20796917 C T GJB6 Missense_Mutation p.A235T 0.22 tolerated(0.56) benign(0.001) TCGA-G4-6628-01 13 24243063 24243063 G - TNFRSF19 Frame_Shift_Del p.A359Lfs*25 0.24 TCGA-G4-6628-01 13 25008761 25008761 G A PARP4 Silent p.G1506G 0.24 TCGA-G4-6628-01 13 25451224 25451224 T C RNF17 Missense_Mutation p.L1558P 0.22 tolerated(0.3) benign(0.001) TCGA-G4-6628-01 13 25481237 25481238 - T CENPJ Frame_Shift_Ins p.Q357Tfs*28 0.18 TCGA-G4-6628-01 13 25823551 25823551 G T MTMR6 Missense_Mutation p.P562H 0.24 tolerated(0.09) benign(0.376) TCGA-G4-6628-01 13 26787976 26787977 TA - RNF6 Frame_Shift_Del p.I681Sfs*7 0.26 TCGA-G4-6628-01 13 28240023 28240023 C T POLR1D Missense_Mutation p.A101V 0.21 tolerated_low_confidence(0.7) benign(0.001) TCGA-G4-6628-01 13 32811811 32811811 C A FRY Missense_Mutation p.H2036N 0.19 tolerated(0.12) benign(0) TCGA-G4-6628-01 13 32878101 32878101 C A ZAR1L Missense_Mutation p.R294M 0.21 deleterious(0) probably_damaging(0.964) TCGA-G4-6628-01 13 32912528 32912528 A G BRCA2 Missense_Mutation p.T1346A 0.20 tolerated(0.07) benign(0.426) TCGA-G4-6628-01 13 33338734 33338734 T C PDS5B Splice_Site p.X1208_splice 0.21 TCGA-G4-6628-01 13 33686986 33686986 C T STARD13 Silent p.T788T 0.36 TCGA-G4-6628-01 13 35733663 35733663 A - NBEA Frame_Shift_Del p.N1121Mfs*9 0.30 TCGA-G4-6628-01 13 36888392 36888392 T G SPG20 Silent p.G485G 0.24 TCGA-G4-6628-01 13 37270331 37270331 T - SERTM1 3'UTR 0.14 TCGA-G4-6628-01 13 38148784 38148784 T C POSTN Missense_Mutation p.K672E 0.18 tolerated(0.41) benign(0.146) TCGA-G4-6628-01 13 38357143 38357143 C T TRPC4 Missense_Mutation p.G110R 0.23 tolerated(0.1) probably_damaging(0.997) TCGA-G4-6628-01 13 39263196 39263196 C T FREM2 Missense_Mutation p.A572V 0.21 tolerated(0.48) benign(0.093) TCGA-G4-6628-01 13 39263845 39263845 C A FREM2 Silent p.P788P 0.29 TCGA-G4-6628-01 13 39265957 39265957 C A FREM2 Silent p.I1492I 0.23 TCGA-G4-6628-01 13 39433580 39433580 T - FREM2 Frame_Shift_Del p.F2459Lfs*27 0.16 TCGA-G4-6628-01 13 39433641 39433641 T C FREM2 Missense_Mutation p.V2478A 0.32 deleterious(0) possibly_damaging(0.836) TCGA-G4-6628-01 13 39587266 39587266 G A PROSER1 Missense_Mutation p.P708L 0.20 deleterious(0) possibly_damaging(0.616) TCGA-G4-6628-01 13 41706316 41706316 C T KBTBD6 Missense_Mutation p.S111N 0.17 tolerated(0.44) benign(0.007) TCGA-G4-6628-01 13 42259199 42259199 T - VWA8 Frame_Shift_Del p.D1438Ifs*16 0.21 TCGA-G4-6628-01 13 43935428 43935428 A - ENOX1 Frame_Shift_Del p.P124Lfs*79 0.23 TCGA-G4-6628-01 13 44948207 44948207 A - SERP2 Frame_Shift_Del p.N17Tfs*8 0.16 TCGA-G4-6628-01 13 45768664 45768664 C T KCTD4 Silent p.E13E 0.28 TCGA-G4-6628-01 13 49076942 49076942 C T RCBTB2 Silent p.P345P 0.32 TCGA-G4-6628-01 13 50205559 50205559 A G ARL11 3'UTR 0.35 TCGA-G4-6628-01 13 50279803 50279803 G A KPNA3 Silent p.A442A 0.34 TCGA-G4-6628-01 13 52603311 52603311 T A UTP14C Missense_Mutation p.I124N 0.26 tolerated(0.25) benign(0.006) TCGA-G4-6628-01 13 52605506 52605506 A - UTP14C 3'UTR 0.23 TCGA-G4-6628-01 13 52606563 52606563 G C UTP14C 3'UTR 0.29 TCGA-G4-6628-01 13 61986226 61986226 C G PCDH20 Missense_Mutation p.G669A 0.25 deleterious(0.02) probably_damaging(0.962) TCGA-G4-6628-01 13 72053384 72053385 - T DACH1 Frame_Shift_Ins p.T598Nfs*2 0.20 TCGA-G4-6628-01 13 73573087 73573087 C G PIBF1 Missense_Mutation p.P726R 0.28 deleterious(0.02) possibly_damaging(0.626) TCGA-G4-6628-01 13 77742708 77742708 G A MYCBP2 Missense_Mutation p.P1952L 0.33 possibly_damaging(0.895) TCGA-G4-6628-01 13 78293774 78293774 C T SLAIN1 Missense_Mutation p.A81V 0.27 deleterious(0.05) unknown(0) TCGA-G4-6628-01 13 78492427 78492427 G A EDNRB Silent p.I184I 0.24 TCGA-G4-6628-01 13 84455655 84455655 C T SLITRK1 5'UTR 0.19 TCGA-G4-6628-01 13 88330862 88330862 G A SLITRK5 3'UTR 0.27 TCGA-G4-6628-01 13 95278235 95278235 T - GPR180 Frame_Shift_Del p.L369Yfs*24 0.23 TCGA-G4-6628-01 13 96238281 96238281 T - DZIP1 Frame_Shift_Del p.E777Kfs*6 0.24 TCGA-G4-6628-01 13 98828565 98828565 G A RNF113B Missense_Mutation p.A309V 0.33 deleterious(0.02) benign(0.034) TCGA-G4-6628-01 13 99452703 99452703 G A DOCK9 Missense_Mutation p.R1933C 0.22 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 13 99540422 99540422 T C DOCK9 Missense_Mutation p.Q678R 0.17 tolerated(0.26) benign(0.001) TCGA-G4-6628-01 14 100387183 100387183 C T EML1 Silent p.N645N 0.15 TCGA-G4-6628-01 14 101340844 101340844 G T MIR337 RNA 0.19 TCGA-G4-6628-01 14 102659830 102659830 T C WDR20 Intron 0.12 TCGA-G4-6628-01 14 102695660 102695660 C T MOK Missense_Mutation p.R409H 0.21 tolerated(1) benign(0.002) TCGA-G4-6628-01 14 104642288 104642288 G A KIF26A Missense_Mutation p.A1055T 0.25 tolerated(0.08) benign(0.03) TCGA-G4-6628-01 14 105052851 105052851 G T C14orf180 Missense_Mutation p.W28C 0.43 tolerated(0.1) possibly_damaging(0.476) TCGA-G4-6628-01 14 105167886 105167886 G A INF2 Missense_Mutation p.G62S 0.35 tolerated(0.09) probably_damaging(0.955) TCGA-G4-6628-01 14 105174895 105174896 - C INF2 Frame_Shift_Ins p.R622Pfs*28 0.15 TCGA-G4-6628-01 14 105180660 105180660 C - INF2 Frame_Shift_Del p.G1056Afs*31 0.25 TCGA-G4-6628-01 14 105352753 105352753 C T CEP170B Missense_Mutation p.P726L 0.36 tolerated(0.16) benign(0.031) TCGA-G4-6628-01 14 105353333 105353333 G A CEP170B Silent p.T919T 0.31 TCGA-G4-6628-01 14 105359865 105359865 G A CEP170B Silent p.V1348V 0.33 TCGA-G4-6628-01 14 105408033 105408033 G A AHNAK2 Silent p.P4585P 0.48 TCGA-G4-6628-01 14 106208682 106208682 G A IGHG1 Silent p.C112C 0.27 TCGA-G4-6628-01 14 106829718 106829718 C T IGHV4-34 Missense_Mutation p.S82N 0.12 tolerated(0.26) benign(0.02) TCGA-G4-6628-01 14 107095159 107095159 G T IGHV4-61 Silent p.T107T 0.39 TCGA-G4-6628-01 14 20443718 20443718 A G OR4K15 Missense_Mutation p.Q14R 0.35 tolerated_low_confidence(0.27) benign(0.012) TCGA-G4-6628-01 14 20852601 20852601 C A TEP1 Silent p.G1096G 0.27 TCGA-G4-6628-01 14 20852647 20852647 C - TEP1 Frame_Shift_Del p.G1081Vfs*26 0.32 TCGA-G4-6628-01 14 20897516 20897516 G A KLHL33 Missense_Mutation p.A365V 0.22 tolerated(0.15) possibly_damaging(0.899) TCGA-G4-6628-01 14 21796600 21796600 T C RPGRIP1 Silent p.P971P 0.33 TCGA-G4-6628-01 14 21897286 21897287 - T CHD8 Frame_Shift_Ins p.I351Nfs*70 0.21 TCGA-G4-6628-01 14 21993741 21993741 C T SALL2 Missense_Mutation p.A41T 0.22 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 14 23391451 23391451 T G PRMT5 Splice_Site p.X566_splice 0.16 TCGA-G4-6628-01 14 23588266 23588266 C T CEBPE Missense_Mutation p.R12Q 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-G4-6628-01 14 23596308 23596308 G A SLC7A8 3'UTR 0.27 TCGA-G4-6628-01 14 23596454 23596454 G C SLC7A8 Missense_Mutation p.Q514E 0.20 tolerated(0.66) benign(0.034) TCGA-G4-6628-01 14 24538352 24538352 C T LRRC16B Missense_Mutation p.P1330L 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-G4-6628-01 14 24626515 24626515 G A RNF31 Missense_Mutation p.R837Q 0.32 tolerated(1) benign(0.011) TCGA-G4-6628-01 14 24653579 24653579 G A IPO4 Missense_Mutation p.P561L 0.27 deleterious(0) possibly_damaging(0.855) TCGA-G4-6628-01 14 24801827 24801827 G A RP11-934B9.3 Missense_Mutation p.R207C 0.27 tolerated_low_confidence(0.18) unknown(0) TCGA-G4-6628-01 14 26917252 26917252 A C NOVA1 Silent p.A479A 0.25 TCGA-G4-6628-01 14 29237712 29237712 G A FOXG1 Silent p.L409L 0.45 TCGA-G4-6628-01 14 29261475 29261475 G T C14orf23 3'UTR 0.59 TCGA-G4-6628-01 14 30068249 30068249 G A PRKD1 Missense_Mutation p.A717V 0.29 tolerated(0.25) possibly_damaging(0.776) TCGA-G4-6628-01 14 31855655 31855655 G A HEATR5A Missense_Mutation p.A146V 0.34 tolerated(0.09) benign(0.023) TCGA-G4-6628-01 14 32561374 32561374 T - ARHGAP5 Frame_Shift_Del p.Y502Mfs*3 0.22 TCGA-G4-6628-01 14 34270262 34270262 G A NPAS3 Missense_Mutation p.V917I 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.854) TCGA-G4-6628-01 14 34270367 34270367 G A NPAS3 3'Flank 0.40 TCGA-G4-6628-01 14 36005056 36005057 - T INSM2 Frame_Shift_Ins p.S536* 0.21 TCGA-G4-6628-01 14 36194270 36194270 T - RALGAPA1 Frame_Shift_Del p.N609Ifs*2 0.29 TCGA-G4-6628-01 14 36943003 36943003 G T SFTA3 3'UTR 0.23 TCGA-G4-6628-01 14 36960487 36960488 - A SFTA3 Frame_Shift_Ins p.L18Sfs*10 0.21 TCGA-G4-6628-01 14 38678868 38678868 G A SSTR1 Missense_Mutation p.A92T 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-G4-6628-01 14 39703224 39703224 G A MIA2 5'UTR 0.30 TCGA-G4-6628-01 14 45432314 45432314 T G FAM179B Silent p.L230L 0.27 TCGA-G4-6628-01 14 50154875 50154875 A G POLE2 Missense_Mutation p.L16S 0.33 deleterious(0) possibly_damaging(0.827) TCGA-G4-6628-01 14 51383792 51383792 T C PYGL Missense_Mutation p.Q296R 0.24 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 14 53004357 53004357 A G TXNDC16 Missense_Mutation p.C93R 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 14 53185716 53185716 G A PSMC6 Missense_Mutation p.G260D 0.26 deleterious(0.03) probably_damaging(0.954) TCGA-G4-6628-01 14 55621400 55621400 G A DLGAP5 Silent p.A666A 0.19 TCGA-G4-6628-01 14 57857742 57857742 G A NAA30 Missense_Mutation p.V23I 0.24 tolerated(1) unknown(0) TCGA-G4-6628-01 14 62212467 62212467 G A HIF1A Missense_Mutation p.R778H 0.21 deleterious(0) probably_damaging(0.935) TCGA-G4-6628-01 14 64066365 64066365 G A WDR89 Missense_Mutation p.A99V 0.34 tolerated(1) benign(0.001) TCGA-G4-6628-01 14 68228248 68228248 C T ZFYVE26 Silent p.T2141T 0.25 TCGA-G4-6628-01 14 68228960 68228960 A G ZFYVE26 Missense_Mutation p.V2110A 0.35 deleterious(0) benign(0.297) TCGA-G4-6628-01 14 70477596 70477596 C T SMOC1 Nonsense_Mutation p.Q264* 0.17 TCGA-G4-6628-01 14 71199959 71199959 G A MAP3K9 Silent p.G723G 0.24 TCGA-G4-6628-01 14 73444937 73444937 G A ZFYVE1 Silent p.C475C 0.24 TCGA-G4-6628-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.24 TCGA-G4-6628-01 14 74960523 74960523 G A ISCA2 Missense_Mutation p.A16T 0.33 tolerated(0.38) benign(0.001) TCGA-G4-6628-01 14 74975976 74975976 C - LTBP2 Frame_Shift_Del p.G1123Afs*55 0.21 TCGA-G4-6628-01 14 75538463 75538463 G A ZC2HC1C Missense_Mutation p.R396H 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 14 76107397 76107397 T C FLVCR2 Silent p.S445S 0.19 TCGA-G4-6628-01 14 77714740 77714740 C T TMEM63C Missense_Mutation p.T551M 0.23 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 14 78217738 78217738 G A SNW1 Missense_Mutation p.A85V 0.24 tolerated(0.15) benign(0.035) TCGA-G4-6628-01 14 81646551 81646552 - A GTF2A1 3'UTR 0.20 TCGA-G4-6628-01 14 88401184 88401184 C T GALC Silent p.L650L 0.15 TCGA-G4-6628-01 14 88431966 88431966 C T GALC Missense_Mutation p.A306T 0.41 deleterious(0.01) possibly_damaging(0.907) TCGA-G4-6628-01 14 88654450 88654450 C - KCNK10 Frame_Shift_Del p.G291Efs*14 0.16 TCGA-G4-6628-01 14 89091326 89091326 C - EML5 Frame_Shift_Del p.G1629Efs*19 0.16 TCGA-G4-6628-01 14 92268639 92268639 C T TC2N Missense_Mutation p.R143H 0.31 deleterious(0) possibly_damaging(0.901) TCGA-G4-6628-01 14 92472698 92472698 T - TRIP11 Frame_Shift_Del p.K541Rfs*17 0.18 TCGA-G4-6628-01 14 93397681 93397681 G A CHGA Missense_Mutation p.G148R 0.27 tolerated(0.22) benign(0.059) TCGA-G4-6628-01 14 94110011 94110011 G A UNC79 Silent p.P1866P 0.34 TCGA-G4-6628-01 14 94528470 94528470 G A DDX24 Missense_Mutation p.H406Y 0.29 deleterious(0) probably_damaging(0.989) TCGA-G4-6628-01 14 94909080 94909080 G T SERPINA11 Missense_Mutation p.L378I 0.23 tolerated(0.34) benign(0.258) TCGA-G4-6628-01 14 95910917 95910917 G A SYNE3 Nonsense_Mutation p.Q561* 0.21 TCGA-G4-6628-01 14 96761299 96761299 A - ATG2B Frame_Shift_Del p.F1808Lfs*28 0.23 TCGA-G4-6628-01 14 99182547 99182547 G - C14orf177 Frame_Shift_Del p.A8Qfs*20 0.30 TCGA-G4-6628-01 15 100272060 100272060 G A LYSMD4 Silent p.C19C 0.38 TCGA-G4-6628-01 15 100871189 100871189 C T ADAMTS17 Missense_Mutation p.S174N 0.18 tolerated(0.24) benign(0.004) TCGA-G4-6628-01 15 20662970 20662970 T C HERC2P3 RNA 0.09 TCGA-G4-6628-01 15 23811310 23811310 C T MKRN3 Silent p.A127A 0.26 TCGA-G4-6628-01 15 25940111 25940111 G A ATP10A Silent p.Y981Y 0.26 TCGA-G4-6628-01 15 28273188 28273188 A G OCA2 Missense_Mutation p.V115A 0.19 tolerated_low_confidence(0.31) benign(0.005) TCGA-G4-6628-01 15 28478448 28478448 C T HERC2 Missense_Mutation p.A1507T 0.19 benign(0.044) TCGA-G4-6628-01 15 28517441 28517441 C A HERC2 Missense_Mutation p.A335S 0.08 possibly_damaging(0.491) TCGA-G4-6628-01 15 31198087 31198087 T G FAN1 Missense_Mutation p.F407L 0.29 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 15 31222790 31222790 C T FAN1 Silent p.C944C 0.19 TCGA-G4-6628-01 15 31776678 31776678 C T OTUD7A Missense_Mutation p.G534S 0.15 tolerated(0.17) probably_damaging(0.999) TCGA-G4-6628-01 15 34130070 34130070 G A RYR3 Silent p.L3963L 0.16 TCGA-G4-6628-01 15 34355349 34355349 C T CHRM5 Missense_Mutation p.P144L 0.28 deleterious(0.01) probably_damaging(1) TCGA-G4-6628-01 15 34646695 34646695 G A NUTM1 Missense_Mutation p.R347H 0.26 tolerated(0.11) possibly_damaging(0.88) TCGA-G4-6628-01 15 37109965 37109965 C T CSNK1A1P1 RNA 0.32 TCGA-G4-6628-01 15 40866125 40866125 C A RPUSD2 Missense_Mutation p.L435M 0.22 tolerated(0.07) benign(0.098) TCGA-G4-6628-01 15 41313107 41313107 T C INO80 Missense_Mutation p.R1089G 0.24 tolerated(0.37) benign(0.204) TCGA-G4-6628-01 15 41745223 41745223 C A RTF1 Missense_Mutation p.A145D 0.24 tolerated(0.23) benign(0.115) TCGA-G4-6628-01 15 42041326 42041326 C T MGA Missense_Mutation p.R1841W 0.13 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 15 42185525 42185527 CTC - SPTBN5 In_Frame_Del p.E57del 0.26 TCGA-G4-6628-01 15 43086863 43086863 C T TTBK2 Missense_Mutation p.R320H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 15 43661215 43661215 C A ZSCAN29 Missense_Mutation p.R143S 0.24 tolerated(0.19) benign(0.004) TCGA-G4-6628-01 15 43769934 43769934 G T TP53BP1 Missense_Mutation p.P271H 0.30 deleterious(0.01) possibly_damaging(0.866) TCGA-G4-6628-01 15 43931161 43931161 G A CATSPER2 Silent p.Y261Y 0.34 TCGA-G4-6628-01 15 45007752 45007753 - A B2M Frame_Shift_Ins p.V69Sfs*21 0.24 TCGA-G4-6628-01 15 45007825 45007825 C - B2M Frame_Shift_Del p.T93Lfs*10 0.23 TCGA-G4-6628-01 15 45365875 45365875 G T SORD 3'UTR 0.16 TCGA-G4-6628-01 15 45409837 45409837 C T DUOXA1 Missense_Mutation p.G443D 0.44 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-G4-6628-01 15 45454072 45454072 G A DUOX1 Silent p.T1331T 0.29 TCGA-G4-6628-01 15 48527142 48527143 - T SLC12A1 Frame_Shift_Ins p.A390Sfs*58 0.31 TCGA-G4-6628-01 15 48748896 48748896 C T FBN1 Missense_Mutation p.G1787D 0.25 probably_damaging(1) TCGA-G4-6628-01 15 49036508 49036508 C A CEP152 Missense_Mutation p.C1255F 0.26 deleterious(0.04) benign(0.388) TCGA-G4-6628-01 15 49170516 49170516 G A EID1 Missense_Mutation p.G48E 0.21 tolerated(0.41) possibly_damaging(0.675) TCGA-G4-6628-01 15 49255201 49255201 G A SHC4 Silent p.R4R 0.13 TCGA-G4-6628-01 15 50193315 50193315 C T ATP8B4 Missense_Mutation p.A755T 0.30 deleterious(0.03) probably_damaging(0.938) TCGA-G4-6628-01 15 50769164 50769164 G A USP8 Missense_Mutation p.R323H 0.11 tolerated(0.14) benign(0.001) TCGA-G4-6628-01 15 53081189 53081189 G A ONECUT1 Missense_Mutation p.A298V 0.22 deleterious(0) probably_damaging(0.974) TCGA-G4-6628-01 15 54556374 54556374 G T UNC13C Nonsense_Mutation p.E1153* 0.26 TCGA-G4-6628-01 15 54916073 54916073 C A UNC13C Missense_Mutation p.L2094I 0.23 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-G4-6628-01 15 55759335 55759335 T - DYX1C1 Frame_Shift_Del p.I144* 0.23 TCGA-G4-6628-01 15 56386181 56386181 T - RFX7 Frame_Shift_Del p.I1249* 0.22 TCGA-G4-6628-01 15 56924168 56924168 T - ZNF280D Frame_Shift_Del p.N823Tfs*29 0.19 TCGA-G4-6628-01 15 56969771 56969771 C T ZNF280D Splice_Site p.X421_splice 0.15 TCGA-G4-6628-01 15 58254356 58254356 T C ALDH1A2 Missense_Mutation p.N369D 0.29 tolerated(1) benign(0.002) TCGA-G4-6628-01 15 58256148 58256148 C T ALDH1A2 Missense_Mutation p.V341M 0.19 deleterious(0.02) possibly_damaging(0.698) TCGA-G4-6628-01 15 58830662 58830662 G T LIPC Missense_Mutation p.Q73H 0.22 tolerated(0.06) benign(0.014) TCGA-G4-6628-01 15 63362109 63362109 T C TPM1 Intron 0.21 TCGA-G4-6628-01 15 64543765 64543765 G A CSNK1G1 Missense_Mutation p.R80C 0.10 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.61 TCGA-G4-6628-01 15 65111321 65111321 C - PIF1 Frame_Shift_Del p.A479Pfs*3 0.21 TCGA-G4-6628-01 15 65140868 65140868 G A AC069368.3 Missense_Mutation p.G30E 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 15 65262526 65262526 T - SPG21 Frame_Shift_Del p.I163* 0.25 TCGA-G4-6628-01 15 66856306 66856306 C T LCTL Missense_Mutation p.V105I 0.16 deleterious(0.01) possibly_damaging(0.635) TCGA-G4-6628-01 15 68118759 68118759 C T SKOR1 Missense_Mutation p.A384V 0.27 deleterious_low_confidence(0) benign(0.354) TCGA-G4-6628-01 15 69004026 69004026 G A CORO2B Missense_Mutation p.R210H 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6628-01 15 69689888 69689888 C T PAQR5 Silent p.L198L 0.19 TCGA-G4-6628-01 15 72511382 72511382 G A PKM Silent p.H19H 0.23 TCGA-G4-6628-01 15 72549750 72549750 A - PARP6 Frame_Shift_Del p.F313Sfs*34 0.17 TCGA-G4-6628-01 15 74426523 74426523 C T ISLR2 Silent p.S476S 0.30 TCGA-G4-6628-01 15 74427819 74427819 T - ISLR2 3'UTR 0.24 TCGA-G4-6628-01 15 74428136 74428136 G A ISLR2 3'UTR 0.44 TCGA-G4-6628-01 15 74741655 74741655 G A UBL7 Missense_Mutation p.R252C 0.25 deleterious(0.01) benign(0.312) TCGA-G4-6628-01 15 75120380 75120380 A T CPLX3 Missense_Mutation p.E57V 0.38 deleterious(0.01) probably_damaging(0.946) TCGA-G4-6628-01 15 75500663 75500663 C T C15orf39 Silent p.A758A 0.23 TCGA-G4-6628-01 15 75641347 75641347 G A NEIL1 Missense_Mutation p.R34H 0.17 deleterious(0) probably_damaging(0.96) TCGA-G4-6628-01 15 75682138 75682138 T C SIN3A Missense_Mutation p.Y959C 0.27 deleterious(0) probably_damaging(0.917) TCGA-G4-6628-01 15 77471471 77471471 C T PEAK1 Missense_Mutation p.R933H 0.40 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 15 79063629 79063629 C T ADAMTS7 Missense_Mutation p.S798N 0.30 tolerated(0.06) possibly_damaging(0.653) TCGA-G4-6628-01 15 79589341 79589341 G A ANKRD34C 3'UTR 0.30 TCGA-G4-6628-01 15 79749301 79749301 C - KIAA1024 Frame_Shift_Del p.S273Vfs*41 0.09 TCGA-G4-6628-01 15 82574928 82574928 C A FAM154B Missense_Mutation p.P241H 0.21 deleterious(0.02) possibly_damaging(0.867) TCGA-G4-6628-01 15 85149765 85149765 G A ZSCAN2 Intron 0.24 TCGA-G4-6628-01 15 85164374 85164374 C T ZSCAN2 Silent p.S316S 0.19 TCGA-G4-6628-01 15 86312199 86312199 G A KLHL25 Silent p.G281G 0.21 TCGA-G4-6628-01 15 89056100 89056100 G A DET1 3'UTR 0.25 TCGA-G4-6628-01 15 89391172 89391172 C T ACAN Silent p.C545C 0.20 TCGA-G4-6628-01 15 89395065 89395065 C T ACAN Silent p.G689G 0.24 TCGA-G4-6628-01 15 89698681 89698681 A - ABHD2 Frame_Shift_Del p.N153Mfs*8 0.27 TCGA-G4-6628-01 15 90349511 90349511 C T ANPEP Missense_Mutation p.V102I 0.31 tolerated(1) benign(0.004) TCGA-G4-6628-01 15 90904233 90904233 C T ZNF774 Silent p.L390L 0.33 TCGA-G4-6628-01 15 91337459 91337459 C T BLM Missense_Mutation p.H1028Y 0.23 deleterious(0) possibly_damaging(0.883) TCGA-G4-6628-01 15 91450629 91450629 G A MAN2A2 Missense_Mutation p.C367Y 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 15 91524890 91524890 G A PRC1 Missense_Mutation p.R171C 0.18 deleterious(0.01) benign(0.007) TCGA-G4-6628-01 16 10851830 10851830 C T NUBP1 Silent p.V184V 0.22 TCGA-G4-6628-01 16 11369790 11369790 G A PRM2 Silent p.C92C 0.22 TCGA-G4-6628-01 16 1270702 1270702 G A CACNA1H Missense_Mutation p.R2257Q 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-G4-6628-01 16 1291636 1291636 C A TPSAB1 Silent p.A145A 0.17 TCGA-G4-6628-01 16 13297253 13297253 G A SHISA9 Missense_Mutation p.A232T 0.20 tolerated(0.66) benign(0.001) TCGA-G4-6628-01 16 15711260 15711260 G A KIAA0430 Silent p.S951S 0.19 TCGA-G4-6628-01 16 15716817 15716817 G A KIAA0430 Nonsense_Mutation p.Q812* 0.26 TCGA-G4-6628-01 16 15719016 15719016 C A KIAA0430 Missense_Mutation p.M656I 0.26 tolerated_low_confidence(0.3) benign(0.001) TCGA-G4-6628-01 16 15853584 15853584 G C MYH11 Missense_Mutation p.A424G 0.31 possibly_damaging(0.814) TCGA-G4-6628-01 16 16200624 16200624 G C ABCC1 Missense_Mutation p.G922A 0.22 tolerated(0.21) benign(0.005) TCGA-G4-6628-01 16 1682325 1682325 G A CRAMP1L Missense_Mutation p.R218H 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 16 1840700 1840700 C T IGFALS Silent p.P611P 0.28 TCGA-G4-6628-01 16 18830855 18830855 A T SMG1 Missense_Mutation p.L3288H 0.27 deleterious(0.01) possibly_damaging(0.72) TCGA-G4-6628-01 16 19455573 19455573 G A TMC5 Splice_Site p.X320_splice 0.21 TCGA-G4-6628-01 16 2030651 2030651 C T NOXO1 Missense_Mutation p.A77T 0.08 tolerated(0.63) probably_damaging(0.945) TCGA-G4-6628-01 16 20648700 20648700 T A ACSM1 Missense_Mutation p.D397V 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-G4-6628-01 16 20809094 20809094 A T ERI2 Missense_Mutation p.S676R 0.31 tolerated(0.19) benign(0.004) TCGA-G4-6628-01 16 2158987 2158987 C T PKD1 Missense_Mutation p.V2061I 0.35 benign(0.006) TCGA-G4-6628-01 16 2159593 2159593 C T PKD1 Missense_Mutation p.A1859T 0.26 probably_damaging(0.969) TCGA-G4-6628-01 16 22108214 22108214 C T VWA3A Nonsense_Mutation p.Q17* 0.29 TCGA-G4-6628-01 16 2233873 2233873 C T CASKIN1 Missense_Mutation p.A496T 0.20 probably_damaging(0.975) TCGA-G4-6628-01 16 23080004 23080004 G T USP31 Missense_Mutation p.P1141H 0.21 tolerated_low_confidence(0.11) possibly_damaging(0.681) TCGA-G4-6628-01 16 23387158 23387158 C A SCNN1B Silent p.R418R 0.33 TCGA-G4-6628-01 16 2347540 2347540 C - ABCA3 Frame_Shift_Del p.V685Cfs*2 0.32 TCGA-G4-6628-01 16 2489369 2489369 C T CCNF Nonsense_Mutation p.Q204* 0.28 TCGA-G4-6628-01 16 2569319 2569319 C T RP11-20I23.1 Missense_Mutation p.H356Y 0.36 unknown(0) TCGA-G4-6628-01 16 27512529 27512529 C A GTF3C1 Missense_Mutation p.D682Y 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 16 2812607 2812607 G A SRRM2 Missense_Mutation p.R693Q 0.36 unknown(0) TCGA-G4-6628-01 16 2825535 2825535 C T TCEB2 Missense_Mutation p.G54D 0.40 tolerated(0.31) benign(0.058) TCGA-G4-6628-01 16 28353969 28353969 G A NPIPB6 Missense_Mutation p.R413C 0.18 tolerated_low_confidence(0.13) benign(0.001) TCGA-G4-6628-01 16 28842307 28842307 C T ATXN2L Missense_Mutation p.A412V 0.44 deleterious(0.02) possibly_damaging(0.602) TCGA-G4-6628-01 16 28848161 28848161 C - ATXN2L 3'UTR 0.16 TCGA-G4-6628-01 16 28946809 28946809 G A CD19 Missense_Mutation p.A294T 0.22 tolerated(0.08) possibly_damaging(0.908) TCGA-G4-6628-01 16 28996227 28996227 G - LAT Frame_Shift_Del p.A18Pfs*41 0.50 TCGA-G4-6628-01 16 28996699 28996699 G A LAT Silent p.G23G 0.11 TCGA-G4-6628-01 16 29680454 29680455 - TA SPN 3'UTR 0.15 TCGA-G4-6628-01 16 29814878 29814878 G A KIF22 Missense_Mutation p.V520I 0.39 tolerated(0.25) benign(0.003) TCGA-G4-6628-01 16 29825012 29825012 G - PRRT2 Frame_Shift_Del p.A214Pfs*15 0.30 TCGA-G4-6628-01 16 30123688 30123688 C A GDPD3 Missense_Mutation p.R141M 0.19 deleterious(0.03) probably_damaging(0.951) TCGA-G4-6628-01 16 3016364 3016364 C T KREMEN2 Missense_Mutation p.P134S 0.28 deleterious(0) probably_damaging(0.986) TCGA-G4-6628-01 16 3021319 3021319 G A PAQR4 Missense_Mutation p.A110T 0.25 tolerated(0.46) benign(0) TCGA-G4-6628-01 16 3024628 3024628 C T PKMYT1 Missense_Mutation p.C301Y 0.16 deleterious(0) possibly_damaging(0.807) TCGA-G4-6628-01 16 30507472 30507472 C T ITGAL Missense_Mutation p.R520W 0.27 deleterious(0.01) benign(0.41) TCGA-G4-6628-01 16 30615967 30615967 G A ZNF689 Missense_Mutation p.P374L 0.28 tolerated(0.15) possibly_damaging(0.828) TCGA-G4-6628-01 16 30664262 30664262 C T PRR14 Silent p.R114R 0.35 TCGA-G4-6628-01 16 30718954 30718954 G T SRCAP Missense_Mutation p.R185M 0.31 unknown(0) TCGA-G4-6628-01 16 30735857 30735857 G A SRCAP Silent p.T1704T 0.22 TCGA-G4-6628-01 16 30938631 30938631 C T FBXL19 Silent p.P80P 0.25 TCGA-G4-6628-01 16 310110 310110 C T ITFG3 Silent p.C176C 0.26 TCGA-G4-6628-01 16 31090507 31090507 A G ZNF646 Silent p.A954A 0.18 TCGA-G4-6628-01 16 31195645 31195645 C - FUS Frame_Shift_Del p.P152Lfs*33 0.25 TCGA-G4-6628-01 16 31235536 31235536 G A TRIM72 Silent p.A298A 0.28 TCGA-G4-6628-01 16 31368581 31368581 G A ITGAX Missense_Mutation p.G109D 0.25 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 16 3139624 3139624 C T ZSCAN10 Missense_Mutation p.R549Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6628-01 16 31422533 31422533 G - ITGAD Frame_Shift_Del 0.21 TCGA-G4-6628-01 16 31447058 31447058 C T ZNF843 3'UTR 0.24 TCGA-G4-6628-01 16 31448212 31448212 G A ZNF843 5'UTR 0.25 TCGA-G4-6628-01 16 31498693 31498693 G - SLC5A2 Frame_Shift_Del p.G211Afs*30 0.32 TCGA-G4-6628-01 16 31501830 31501830 G A SLC5A2 Missense_Mutation p.V665M 0.40 deleterious(0.01) benign(0.008) TCGA-G4-6628-01 16 3432859 3432859 G A ZSCAN32 Missense_Mutation p.A484V 0.20 tolerated_low_confidence(1) benign(0) TCGA-G4-6628-01 16 3708835 3708835 G A TRAP1 Missense_Mutation p.R658C 0.27 deleterious(0) probably_damaging(0.932) TCGA-G4-6628-01 16 3795310 3795310 G A CREBBP Silent p.C1294C 0.34 TCGA-G4-6628-01 16 3828184 3828184 C A CREBBP Splice_Site p.X648_splice 0.30 TCGA-G4-6628-01 16 427059 427059 G T TMEM8A Missense_Mutation p.L205I 0.26 tolerated(0.27) benign(0.027) TCGA-G4-6628-01 16 4642320 4642320 G A C16orf96 Missense_Mutation p.R909H 0.15 deleterious(0.04) possibly_damaging(0.715) TCGA-G4-6628-01 16 46615862 46615862 C T SHCBP1 Missense_Mutation p.A600T 0.22 tolerated(0.45) benign(0.002) TCGA-G4-6628-01 16 46637472 46637472 C T SHCBP1 Missense_Mutation p.A398T 0.21 tolerated(0.49) benign(0.01) TCGA-G4-6628-01 16 46717507 46717507 C T VPS35 Silent p.Q5Q 0.20 TCGA-G4-6628-01 16 4702778 4702778 C A MGRN1 Silent p.I132I 0.25 TCGA-G4-6628-01 16 48261824 48261824 G A ABCC11 Silent p.T96T 0.32 TCGA-G4-6628-01 16 4940827 4940827 G A PPL Silent p.S688S 0.33 TCGA-G4-6628-01 16 5046380 5046380 G A SEC14L5 Silent p.R233R 0.27 TCGA-G4-6628-01 16 51175482 51175482 G A SALL1 Silent p.G217G 0.33 TCGA-G4-6628-01 16 53261367 53261367 A - CHD9 Frame_Shift_Del p.K703Rfs*7 0.18 TCGA-G4-6628-01 16 54319402 54319402 G A IRX3 Missense_Mutation p.P131S 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-G4-6628-01 16 56936357 56936357 C T SLC12A3 Silent p.N940N 0.31 TCGA-G4-6628-01 16 56969381 56969381 C T HERPUD1 Silent p.N98N 0.22 TCGA-G4-6628-01 16 57059913 57059913 C T NLRC5 Missense_Mutation p.A353V 0.31 tolerated(0.08) benign(0.292) TCGA-G4-6628-01 16 57108585 57108585 C T NLRC5 Nonsense_Mutation p.Q1581* 0.30 TCGA-G4-6628-01 16 58633272 58633272 C T CNOT1 5'UTR 0.25 TCGA-G4-6628-01 16 61747823 61747823 T G CDH8 Missense_Mutation p.K526Q 0.24 tolerated(0.66) benign(0.022) TCGA-G4-6628-01 16 618142 618142 G A NHLRC4 Missense_Mutation p.S32N 0.22 tolerated(0.05) possibly_damaging(0.469) TCGA-G4-6628-01 16 67188557 67188557 C T TRADD Missense_Mutation p.A312T 0.38 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-G4-6628-01 16 67197171 67197171 G A FBXL8 Silent p.P191P 0.34 TCGA-G4-6628-01 16 67580098 67580098 G A FAM65A Missense_Mutation p.V1196M 0.25 deleterious(0.02) possibly_damaging(0.86) TCGA-G4-6628-01 16 67697449 67697449 G A ENKD1 Missense_Mutation p.R252C 0.39 deleterious(0) probably_damaging(0.939) TCGA-G4-6628-01 16 68014119 68014119 G C DPEP3 Missense_Mutation p.F80L 0.31 tolerated_low_confidence(0.65) benign(0) TCGA-G4-6628-01 16 68055365 68055365 C A DDX28 3'UTR 0.31 TCGA-G4-6628-01 16 68057207 68057207 A C DDX28 5'UTR 0.24 TCGA-G4-6628-01 16 68847351 68847351 G A CDH1 Missense_Mutation p.V425I 0.29 tolerated(1) benign(0.133) TCGA-G4-6628-01 16 69007985 69007985 C G TANGO6 Missense_Mutation p.A919G 0.24 tolerated(0.1) benign(0.014) TCGA-G4-6628-01 16 69191041 69191041 G A CIRH1A Missense_Mutation p.D448N 0.26 deleterious(0.03) benign(0.215) TCGA-G4-6628-01 16 69395304 69395304 T C TERF2 Intron 0.20 TCGA-G4-6628-01 16 69776333 69776333 G A NOB1 Missense_Mutation p.R381C 0.28 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 16 70365630 70365631 - A DDX19B Frame_Shift_Ins p.T345Nfs*3 0.19 TCGA-G4-6628-01 16 70900124 70900124 C T HYDIN Missense_Mutation p.A3807T 0.20 benign(0) TCGA-G4-6628-01 16 70908282 70908282 G A HYDIN Missense_Mutation p.T3625I 0.10 benign(0.033) TCGA-G4-6628-01 16 709248 709248 C T WDR90 Missense_Mutation p.P1019L 0.25 tolerated(0.68) benign(0) TCGA-G4-6628-01 16 71416647 71416647 G T CALB2 Missense_Mutation p.R123M 0.34 tolerated(0.08) probably_damaging(0.992) TCGA-G4-6628-01 16 71886322 71886322 A G ATXN1L 3'UTR 0.24 TCGA-G4-6628-01 16 72057063 72057063 G A DHODH Splice_Site p.X274_splice 0.16 TCGA-G4-6628-01 16 74514279 74514279 G T GLG1 Missense_Mutation p.L563M 0.23 deleterious(0.04) possibly_damaging(0.675) TCGA-G4-6628-01 16 74678503 74678503 C A RFWD3 Missense_Mutation p.G308V 0.30 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 16 75513216 75513216 C T CHST6 Missense_Mutation p.V171M 0.23 deleterious(0) probably_damaging(0.951) TCGA-G4-6628-01 16 7568266 7568266 G A RBFOX1 Missense_Mutation p.A69T 0.33 tolerated(1) benign(0.048) TCGA-G4-6628-01 16 777462 777462 C T HAGHL 5'UTR 0.30 TCGA-G4-6628-01 16 77775743 77775744 - A NUDT7 Frame_Shift_Ins p.P208Tfs*4 0.26 TCGA-G4-6628-01 16 77822776 77822776 C A VAT1L Missense_Mutation p.P66H 0.26 deleterious(0.01) possibly_damaging(0.789) TCGA-G4-6628-01 16 78420819 78420819 T C WWOX Silent p.F193F 0.28 TCGA-G4-6628-01 16 80583508 80583508 T C DYNLRB2 Silent p.L69L 0.26 TCGA-G4-6628-01 16 80666968 80666968 G A CDYL2 Missense_Mutation p.T261M 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 16 81066218 81066218 C T CENPN Silent p.S327S 0.16 TCGA-G4-6628-01 16 81236192 81236192 G A PKD1L2 Silent p.S352S 0.20 TCGA-G4-6628-01 16 819456 819456 C T MSLNL Missense_Mutation p.R1045H 0.11 benign(0.001) TCGA-G4-6628-01 16 823026 823026 G A MSLNL Missense_Mutation p.P720L 0.26 probably_damaging(1) TCGA-G4-6628-01 16 83999181 83999181 C T OSGIN1 Missense_Mutation p.P335S 0.20 deleterious(0) probably_damaging(0.947) TCGA-G4-6628-01 16 84067069 84067069 C T SLC38A8 Missense_Mutation p.D132N 0.28 tolerated(0.34) benign(0.082) TCGA-G4-6628-01 16 84691175 84691175 C T KLHL36 Silent p.C254C 0.35 TCGA-G4-6628-01 16 847845 847845 C T CHTF18 Missense_Mutation p.T933M 0.33 tolerated(0.11) benign(0.014) TCGA-G4-6628-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.25 TCGA-G4-6628-01 16 85952318 85952318 C T IRF8 Silent p.C299C 0.16 TCGA-G4-6628-01 16 87677989 87677989 G A JPH3 Missense_Mutation p.E170K 0.40 deleterious(0) benign(0.371) TCGA-G4-6628-01 16 88598567 88598567 C T ZFPM1 Silent p.R290R 0.22 TCGA-G4-6628-01 16 88802632 88802632 G A PIEZO1 Missense_Mutation p.T494I 0.19 deleterious(0.04) possibly_damaging(0.878) TCGA-G4-6628-01 16 88871992 88871992 C T CDT1 Silent p.S211S 0.20 TCGA-G4-6628-01 16 8889867 8889867 C T TMEM186 Missense_Mutation p.R195H 0.23 tolerated(0.15) benign(0.037) TCGA-G4-6628-01 16 89294855 89294855 T A ZNF778 Nonsense_Mutation p.L692* 0.17 TCGA-G4-6628-01 16 89349356 89349356 T - ANKRD11 Frame_Shift_Del p.E1199Rfs*119 0.28 TCGA-G4-6628-01 16 89383372 89383372 C T ANKRD11 Missense_Mutation p.S19N 0.29 benign(0) TCGA-G4-6628-01 16 89650176 89650176 C T CPNE7 Silent p.I218I 0.31 TCGA-G4-6628-01 16 89696807 89696807 G C DPEP1 5'UTR 0.28 TCGA-G4-6628-01 16 89877367 89877372 ACTGGT - FANCA In_Frame_Del p.T131_S132del 0.14 TCGA-G4-6628-01 16 90037784 90037784 G - CENPBD1 Frame_Shift_Del p.Q183Rfs*4 0.25 TCGA-G4-6628-01 16 9858232 9858232 C T GRIN2A Missense_Mutation p.A1057T 0.26 tolerated(0.31) benign(0.16) TCGA-G4-6628-01 17 10215231 10215231 G A MYH13 Nonsense_Mutation p.Q1510* 0.23 TCGA-G4-6628-01 17 10222452 10222452 C T MYH13 Silent p.T1131T 0.40 TCGA-G4-6628-01 17 10351204 10351204 C T MYH4 Silent p.Q1632Q 0.20 TCGA-G4-6628-01 17 11778484 11778484 G A DNAH9 Silent p.T3487T 0.47 TCGA-G4-6628-01 17 11954 11954 G A DOC2B Missense_Mutation p.R186C 0.26 deleterious(0) possibly_damaging(0.816) TCGA-G4-6628-01 17 12032541 12032541 C T MAP2K4 Missense_Mutation p.P326L 0.28 deleterious(0) probably_damaging(0.97) TCGA-G4-6628-01 17 13980127 13980128 - A COX10 Frame_Shift_Ins p.T87Nfs*12 0.12 TCGA-G4-6628-01 17 15234563 15234563 G A TEKT3 Nonsense_Mutation p.R114* 0.24 TCGA-G4-6628-01 17 1579070 1579070 C T PRPF8 Missense_Mutation p.V906I 0.21 tolerated(1) benign(0.001) TCGA-G4-6628-01 17 15878157 15878157 G A ADORA2B Missense_Mutation p.C167Y 0.29 tolerated(1) benign(0.022) TCGA-G4-6628-01 17 15878433 15878433 T C ADORA2B Missense_Mutation p.F259S 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 17 16325986 16325986 G A TRPV2 Silent p.L136L 0.33 TCGA-G4-6628-01 17 16329474 16329474 C A TRPV2 Missense_Mutation p.T329N 0.33 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 17 17125913 17125913 C T FLCN Silent p.T227T 0.27 TCGA-G4-6628-01 17 17131374 17131374 G A FLCN Silent p.H26H 0.30 TCGA-G4-6628-01 17 17168271 17168271 T C COPS3 Missense_Mutation p.K156E 0.35 tolerated(0.05) benign(0.391) TCGA-G4-6628-01 17 17184078 17184078 G A COPS3 Intron 0.27 TCGA-G4-6628-01 17 17696715 17696716 - C RAI1 Frame_Shift_Ins p.S154Qfs*84 0.26 TCGA-G4-6628-01 17 18042245 18042245 T C MYO15A Missense_Mutation p.Y1710H 0.26 unknown(0) TCGA-G4-6628-01 17 18133323 18133323 C T LLGL1 Silent p.A50A 0.18 TCGA-G4-6628-01 17 18160256 18160256 G A FLII Silent p.Y47Y 0.34 TCGA-G4-6628-01 17 18391052 18391052 T C LGALS9C Missense_Mutation p.L142P 0.19 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 18397938 18397938 C T LGALS9C 3'UTR 0.25 TCGA-G4-6628-01 17 18635393 18635393 C T TRIM16L Missense_Mutation p.R137C 0.16 tolerated(0.11) possibly_damaging(0.586) TCGA-G4-6628-01 17 18891617 18891617 G A FAM83G Silent p.N211N 0.24 TCGA-G4-6628-01 17 20135639 20135639 G A SPECC1 Missense_Mutation p.E758K 0.14 deleterious(0.01) benign(0.071) TCGA-G4-6628-01 17 20224638 20224638 C A AC004702.2 Intron 0.29 TCGA-G4-6628-01 17 21320793 21320793 T C KCNJ12 3'UTR 0.15 TCGA-G4-6628-01 17 2227356 2227356 A - SRR 3'UTR 0.40 TCGA-G4-6628-01 17 25633960 25633960 G A WSB1 Intron 0.18 TCGA-G4-6628-01 17 2568692 2568692 G A PAFAH1B1 Missense_Mutation p.R20H 0.23 tolerated(0.7) benign(0.006) TCGA-G4-6628-01 17 2606624 2606624 G A CLUH Missense_Mutation p.R117C 0.42 deleterious(0) possibly_damaging(0.776) TCGA-G4-6628-01 17 2607801 2607801 G T CLUH Missense_Mutation p.A15E 0.43 tolerated_low_confidence(1) benign(0) TCGA-G4-6628-01 17 26694895 26694895 G T CTB-96E2.2 Missense_Mutation p.R47S 0.11 tolerated(0.1) benign(0.262) TCGA-G4-6628-01 17 26940521 26940521 C T RP11-192H23.4 Silent p.Q87Q 0.26 TCGA-G4-6628-01 17 27001317 27001317 G A SUPT6H Silent p.E42E 0.22 TCGA-G4-6628-01 17 27948275 27948275 G A CORO6 Silent p.G55G 0.17 TCGA-G4-6628-01 17 27957920 27957920 C A SSH2 Missense_Mutation p.R1404M 0.23 deleterious(0) probably_damaging(0.954) TCGA-G4-6628-01 17 27958528 27958528 C A SSH2 Missense_Mutation p.E1201D 0.27 tolerated_low_confidence(0.08) benign(0.007) TCGA-G4-6628-01 17 27959209 27959209 T C SSH2 Silent p.S974S 0.24 TCGA-G4-6628-01 17 29219769 29219769 T - ATAD5 Frame_Shift_Del p.S1470Pfs*10 0.20 TCGA-G4-6628-01 17 29546106 29546106 C T NF1 Silent p.H537H 0.25 TCGA-G4-6628-01 17 2966009 2966009 C T OR1D5 Missense_Mutation p.G298E 0.10 tolerated(0.13) benign(0.016) TCGA-G4-6628-01 17 29677240 29677240 G A NF1 Missense_Mutation p.S2454N 0.17 tolerated_low_confidence(0.21) benign(0.051) TCGA-G4-6628-01 17 29679433 29679433 G A NF1 Splice_Site p.X2539_splice 0.13 TCGA-G4-6628-01 17 32906132 32906132 C T C17orf102 Silent p.P56P 0.24 TCGA-G4-6628-01 17 32964803 32964803 A G TMEM132E Missense_Mutation p.Q836R 0.29 deleterious(0) probably_damaging(0.993) TCGA-G4-6628-01 17 33285677 33285677 C T CCT6B Missense_Mutation p.V80I 0.32 tolerated(0.11) benign(0.114) TCGA-G4-6628-01 17 33464119 33464119 G A NLE1 Silent p.T243T 0.22 TCGA-G4-6628-01 17 33491094 33491094 C T UNC45B Silent p.L354L 0.20 TCGA-G4-6628-01 17 34073379 34073379 G A GAS2L2 Silent p.D379D 0.33 TCGA-G4-6628-01 17 34391686 34391686 T G CCL18 5'UTR 0.23 TCGA-G4-6628-01 17 3491575 3491575 G A SHPK Silent p.P377P 0.25 TCGA-G4-6628-01 17 35344024 35344024 C T AATF Missense_Mutation p.A314V 0.28 tolerated(0.16) benign(0.009) TCGA-G4-6628-01 17 3563728 3563728 G A CTNS Intron 0.38 TCGA-G4-6628-01 17 35913465 35913465 A G SYNRG Missense_Mutation p.I787T 0.26 tolerated_low_confidence(0.9) benign(0.001) TCGA-G4-6628-01 17 36357239 36357239 G T RP11-1407O15.2 Silent p.S338S 0.10 TCGA-G4-6628-01 17 36482664 36482664 C T GPR179 Missense_Mutation p.R2263Q 0.29 tolerated_low_confidence(1) benign(0) TCGA-G4-6628-01 17 36997570 36997570 C T C17orf98 Missense_Mutation p.A25T 0.38 deleterious(0.03) benign(0) TCGA-G4-6628-01 17 37347832 37347832 G T CACNB1 Silent p.S62S 0.15 TCGA-G4-6628-01 17 37627348 37627348 G T CDK12 Missense_Mutation p.K421N 0.24 possibly_damaging(0.775) TCGA-G4-6628-01 17 38209921 38209921 G T MED24 Intron 0.25 TCGA-G4-6628-01 17 38323816 38323816 C T CASC3 Silent p.P534P 0.26 TCGA-G4-6628-01 17 38520511 38520511 C T CTD-2267D19.3 3'UTR 0.24 TCGA-G4-6628-01 17 38854446 38854446 T - KRT24 3'UTR 0.44 TCGA-G4-6628-01 17 38953264 38953264 G A KRT28 Silent p.H294H 0.21 TCGA-G4-6628-01 17 39503197 39503197 C T KRT33A Missense_Mutation p.V259I 0.12 tolerated(0.08) benign(0.363) TCGA-G4-6628-01 17 39503420 39503420 C T KRT33A Missense_Mutation p.A215T 0.35 tolerated(0.3) benign(0.327) TCGA-G4-6628-01 17 39642556 39642556 A G KRT36 3'UTR 0.35 TCGA-G4-6628-01 17 39643607 39643607 C A KRT36 Missense_Mutation p.S328I 0.33 deleterious(0) possibly_damaging(0.845) TCGA-G4-6628-01 17 39913993 39913993 C T JUP Missense_Mutation p.G606E 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-G4-6628-01 17 40134398 40134398 T - DNAJC7 Frame_Shift_Del p.N369Mfs*6 0.16 TCGA-G4-6628-01 17 40344981 40344981 A G GHDC Silent p.S110S 0.23 TCGA-G4-6628-01 17 40370318 40370318 C A STAT5B Missense_Mutation p.Q340H 0.23 deleterious(0) benign(0.12) TCGA-G4-6628-01 17 40481588 40481588 G A STAT3 Missense_Mutation p.A406V 0.24 tolerated(0.36) possibly_damaging(0.708) TCGA-G4-6628-01 17 42254194 42254194 C T ASB16 Missense_Mutation p.R220C 0.27 deleterious(0.05) benign(0.157) TCGA-G4-6628-01 17 42272170 42272170 G A ATXN7L3 Nonsense_Mutation p.R242* 0.30 TCGA-G4-6628-01 17 42427841 42427841 G A GRN Missense_Mutation p.C165Y 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 42461047 42461047 G A ITGA2B Missense_Mutation p.P342S 0.41 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 43221076 43221077 - G ACBD4 3'UTR 0.18 TCGA-G4-6628-01 17 43228486 43228486 C - HEXIM1 3'UTR 0.28 TCGA-G4-6628-01 17 4350215 4350215 G A SPNS3 Silent p.S193S 0.20 TCGA-G4-6628-01 17 44143918 44143918 A G KANSL1 Silent p.V611V 0.15 TCGA-G4-6628-01 17 44248899 44248899 C - KANSL1 Frame_Shift_Del p.G204Vfs*2 0.12 TCGA-G4-6628-01 17 44632741 44632741 C T LRRC37A2 Silent p.L1669L 0.14 TCGA-G4-6628-01 17 45664629 45664629 C A NPEPPS Silent p.S338S 0.06 TCGA-G4-6628-01 17 45738492 45738492 G T KPNB1 Missense_Mutation p.R215M 0.28 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 17 45896384 45896384 G T OSBPL7 Missense_Mutation p.L113I 0.21 deleterious(0) probably_damaging(0.954) TCGA-G4-6628-01 17 45916363 45916363 C T SCRN2 Missense_Mutation p.R189H 0.30 deleterious(0.02) possibly_damaging(0.466) TCGA-G4-6628-01 17 46023985 46023985 G A PNPO Missense_Mutation p.G208D 0.24 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 46805871 46805871 C T HOXB13 Missense_Mutation p.A29T 0.37 tolerated(0.06) benign(0.003) TCGA-G4-6628-01 17 4804358 4804358 G A CHRNE Silent p.Y243Y 0.17 TCGA-G4-6628-01 17 4836097 4836097 C A GP1BA Silent p.T66T 0.28 TCGA-G4-6628-01 17 4836496 4836496 G A GP1BA Silent p.S199S 0.21 TCGA-G4-6628-01 17 4837152 4837152 C - GP1BA Frame_Shift_Del p.S420Afs*52 0.26 TCGA-G4-6628-01 17 48629483 48629483 C T SPATA20 Silent p.G633G 0.19 TCGA-G4-6628-01 17 48777098 48777098 C - ANKRD40 Frame_Shift_Del p.G147Afs*26 0.22 TCGA-G4-6628-01 17 4927012 4927012 G - KIF1C Frame_Shift_Del p.L962Cfs*126 0.27 TCGA-G4-6628-01 17 49279405 49279405 G A MBTD1 Missense_Mutation p.T366I 0.27 deleterious(0.01) benign(0.025) TCGA-G4-6628-01 17 49280159 49280159 G A MBTD1 Silent p.S322S 0.14 TCGA-G4-6628-01 17 49297754 49297754 G A MBTD1 Silent p.S75S 0.21 TCGA-G4-6628-01 17 4998448 4998448 A - ZFP3 3'UTR 0.33 TCGA-G4-6628-01 17 5033939 5033939 G A USP6 Missense_Mutation p.V39I 0.15 deleterious_low_confidence(0.04) benign(0.103) TCGA-G4-6628-01 17 5393517 5393517 A - MIS12 3'UTR 0.21 TCGA-G4-6628-01 17 5418217 5418217 G A NLRP1 Missense_Mutation p.R1427W 0.14 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 54450138 54450138 C T ANKFN1 Silent p.L248L 0.30 TCGA-G4-6628-01 17 54451989 54451989 G T ANKFN1 Missense_Mutation p.C278F 0.25 tolerated(0.17) possibly_damaging(0.793) TCGA-G4-6628-01 17 54872413 54872413 G A C17orf67 3'UTR 0.42 TCGA-G4-6628-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.28 TCGA-G4-6628-01 17 56437585 56437585 C T RNF43 Missense_Mutation p.E293K 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 56448272 56448272 C A RNF43 Missense_Mutation p.K125N 0.22 deleterious(0) possibly_damaging(0.881) TCGA-G4-6628-01 17 56581788 56581788 C T MTMR4 Missense_Mutation p.C454Y 0.11 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 57682876 57682876 G A DHX40 Missense_Mutation p.A681T 0.16 deleterious(0) possibly_damaging(0.453) TCGA-G4-6628-01 17 57771232 57771232 T C CLTC 3'UTR 0.17 TCGA-G4-6628-01 17 58504131 58504131 C T C17orf64 Missense_Mutation p.R128C 0.25 tolerated(0.23) benign(0.022) TCGA-G4-6628-01 17 6028 6028 C T DOC2B Silent p.S302S 0.44 TCGA-G4-6628-01 17 60503953 60503953 A G METTL2A Missense_Mutation p.S166G 0.26 tolerated(0.37) benign(0.008) TCGA-G4-6628-01 17 61611590 61611590 A G KCNH6 Missense_Mutation p.H340R 0.27 deleterious(0) probably_damaging(0.992) TCGA-G4-6628-01 17 61897259 61897259 C T FTSJ3 Missense_Mutation p.G816E 0.25 deleterious(0.03) probably_damaging(1) TCGA-G4-6628-01 17 61907851 61907851 C A PSMC5 Missense_Mutation p.A181D 0.22 tolerated(0.48) benign(0.021) TCGA-G4-6628-01 17 61958820 61958820 C T GH2 Missense_Mutation p.G24S 0.22 tolerated(0.1) possibly_damaging(0.816) TCGA-G4-6628-01 17 62130320 62130320 T C ERN1 Silent p.P691P 0.21 TCGA-G4-6628-01 17 62291284 62291284 C G TEX2 Silent p.L98L 0.32 TCGA-G4-6628-01 17 62796316 62796316 G T PLEKHM1P RNA 0.26 TCGA-G4-6628-01 17 65132282 65132282 C T HELZ Missense_Mutation p.V996I 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6628-01 17 65343568 65343568 G A PSMD12 Nonsense_Mutation p.R182* 0.28 TCGA-G4-6628-01 17 6555530 6555530 G A C17orf100 Silent p.A99A 0.33 TCGA-G4-6628-01 17 65942315 65942315 G A BPTF Silent p.V2497V 0.33 TCGA-G4-6628-01 17 6690116 6690118 CAA - FBXO39 In_Frame_Del p.N350del 0.19 TCGA-G4-6628-01 17 6979205 6979205 C T CLEC10A Splice_Site p.X174_splice 0.26 TCGA-G4-6628-01 17 71238427 71238427 C - C17orf80 Frame_Shift_Del p.P521Lfs*11 0.22 TCGA-G4-6628-01 17 71243587 71243587 A G C17orf80 3'UTR 0.33 TCGA-G4-6628-01 17 7124983 7124983 C A ACADVL Missense_Mutation p.L225I 0.19 deleterious(0.01) probably_damaging(0.923) TCGA-G4-6628-01 17 71434265 71434265 T C SDK2 Missense_Mutation p.K252E 0.26 deleterious(0.01) possibly_damaging(0.472) TCGA-G4-6628-01 17 7225022 7225022 C T NEURL4 Missense_Mutation p.G986R 0.40 tolerated(0.46) probably_damaging(0.945) TCGA-G4-6628-01 17 72347033 72347033 C T AC103809.2 Missense_Mutation p.R93H 0.25 possibly_damaging(0.711) TCGA-G4-6628-01 17 72365694 72365694 C T GPR142 Silent p.L111L 0.28 TCGA-G4-6628-01 17 72367988 72367988 C T GPR142 Missense_Mutation p.A213V 0.29 tolerated(1) benign(0.019) TCGA-G4-6628-01 17 7256272 7256272 C A KCTD11 Missense_Mutation p.A4D 0.38 deleterious(0) possibly_damaging(0.479) TCGA-G4-6628-01 17 7257618 7257618 G T KCTD11 3'UTR 0.24 TCGA-G4-6628-01 17 72915648 72915648 C T USH1G Missense_Mutation p.S428N 0.26 tolerated(0.08) benign(0.414) TCGA-G4-6628-01 17 7330279 7330279 C - C17orf74 Frame_Shift_Del p.P325Lfs*74 0.24 TCGA-G4-6628-01 17 73702572 73702572 G T SAP30BP Missense_Mutation p.G300C 0.09 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 73750892 73750892 C A ITGB4 Silent p.S1518S 0.36 TCGA-G4-6628-01 17 74003980 74003980 C T EVPL Missense_Mutation p.G1769D 0.21 deleterious(0.03) probably_damaging(1) TCGA-G4-6628-01 17 74005409 74005409 G A EVPL Missense_Mutation p.R1293C 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6628-01 17 7402719 7402719 C - POLR2A Frame_Shift_Del p.Q529Rfs*32 0.24 TCGA-G4-6628-01 17 74084637 74084637 C T EXOC7 Missense_Mutation p.A454T 0.41 tolerated(0.09) possibly_damaging(0.759) TCGA-G4-6628-01 17 7417427 7417427 G A POLR2A Silent p.S1948S 0.30 TCGA-G4-6628-01 17 7640556 7640556 C G DNAH2 Missense_Mutation p.L384V 0.22 benign(0.044) TCGA-G4-6628-01 17 76440871 76440871 C T DNAH17 Silent p.S3767S 0.20 TCGA-G4-6628-01 17 76547649 76547649 G A DNAH17 Nonsense_Mutation p.Q787* 0.22 TCGA-G4-6628-01 17 76567071 76567071 G A DNAH17 Missense_Mutation p.R293W 0.28 possibly_damaging(0.566) TCGA-G4-6628-01 17 7806730 7806730 G A CHD3 Silent p.G1271G 0.34 TCGA-G4-6628-01 17 78091489 78091489 C T GAA Missense_Mutation p.P808S 0.26 tolerated(0.52) benign(0.023) TCGA-G4-6628-01 17 7827781 7827781 G A KCNAB3 Silent p.G221G 0.14 TCGA-G4-6628-01 17 7830673 7830673 G A KCNAB3 Silent p.Y131Y 0.18 TCGA-G4-6628-01 17 79171603 79171603 G A AZI1 Missense_Mutation p.T519M 0.27 deleterious(0) probably_damaging(0.944) TCGA-G4-6628-01 17 79203169 79203169 G A ENTHD2 Silent p.T379T 0.23 TCGA-G4-6628-01 17 79671366 79671366 C - SLC25A10 Frame_Shift_Del p.K58Rfs*29 0.30 TCGA-G4-6628-01 17 80040534 80040534 G T FASN Missense_Mutation p.R1930S 0.28 tolerated(0.17) benign(0.026) TCGA-G4-6628-01 17 80049304 80049304 C T FASN Missense_Mutation p.R429H 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 17 80209319 80209319 C T CSNK1D Missense_Mutation p.R274Q 0.32 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-G4-6628-01 17 80788309 80788309 G A ZNF750 Silent p.S627S 0.15 TCGA-G4-6628-01 17 8108194 8108194 C T AURKB Missense_Mutation p.A344T 0.23 tolerated_low_confidence(0.05) benign(0.019) TCGA-G4-6628-01 17 8111118 8111118 C T AURKB Missense_Mutation p.R30Q 0.31 tolerated(0.66) benign(0.007) TCGA-G4-6628-01 17 909374 909374 G - ABR Frame_Shift_Del p.I843Ffs*41 0.10 TCGA-G4-6628-01 17 9559765 9559765 C T USP43 Missense_Mutation p.H184Y 0.30 deleterious(0) probably_damaging(0.99) TCGA-G4-6628-01 17 9604716 9604716 G A USP43 Silent p.Q570Q 0.13 TCGA-G4-6628-01 17 9820526 9820526 C A GAS7 3'UTR 0.31 TCGA-G4-6628-01 18 12254379 12254379 C T CIDEA 5'UTR 0.23 TCGA-G4-6628-01 18 12344230 12344230 C T AFG3L2 Silent p.T560T 0.26 TCGA-G4-6628-01 18 12351083 12351083 C T AFG3L2 Splice_Site p.X518_splice 0.11 TCGA-G4-6628-01 18 12699829 12699829 T - CEP76 Frame_Shift_Del p.T99Lfs*90 0.25 TCGA-G4-6628-01 18 13105058 13105058 G T CEP192 Nonsense_Mutation p.E2343* 0.25 TCGA-G4-6628-01 18 13645350 13645350 G T LDLRAD4 Silent p.V205V 0.34 TCGA-G4-6628-01 18 18559913 18559913 T - ROCK1 Frame_Shift_Del p.N871Tfs*5 0.20 TCGA-G4-6628-01 18 19405541 19405541 A G MIB1 Intron 0.32 TCGA-G4-6628-01 18 21098870 21098870 G A C18orf8 Missense_Mutation p.V224I 0.25 tolerated(0.75) benign(0.004) TCGA-G4-6628-01 18 21100194 21100194 G - C18orf8 Frame_Shift_Del p.G294Efs*32 0.19 TCGA-G4-6628-01 18 21464748 21464748 G T LAMA3 Missense_Mutation p.G1745V 0.21 possibly_damaging(0.702) TCGA-G4-6628-01 18 21662977 21662977 A - TTC39C Frame_Shift_Del p.E308Kfs*20 0.19 TCGA-G4-6628-01 18 22804381 22804381 G A ZNF521 Silent p.D1167D 0.23 TCGA-G4-6628-01 18 23738107 23738107 C T PSMA8 Nonsense_Mutation p.R132* 0.18 TCGA-G4-6628-01 18 23873430 23873431 TC - TAF4B Frame_Shift_Del p.L590Vfs*11 0.14 TCGA-G4-6628-01 18 24496847 24496847 T A CHST9 Silent p.G236G 0.20 TCGA-G4-6628-01 18 24496849 24496849 C T CHST9 Missense_Mutation p.G236R 0.20 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 18 25572779 25572779 C A CDH2 Missense_Mutation p.R395M 0.12 deleterious(0.03) possibly_damaging(0.881) TCGA-G4-6628-01 18 28723714 28723714 A G DSC1 Missense_Mutation p.M327T 0.18 deleterious(0) probably_damaging(0.978) TCGA-G4-6628-01 18 29617087 29617087 G A RNF125 Missense_Mutation p.R58H 0.23 tolerated(0.84) benign(0.011) TCGA-G4-6628-01 18 30350087 30350087 C A KLHL14 Missense_Mutation p.E156D 0.12 tolerated(1) benign(0.228) TCGA-G4-6628-01 18 31709860 31709860 G C NOL4 Missense_Mutation p.A130G 0.23 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 18 31709978 31709978 C T NOL4 Missense_Mutation p.V91I 0.33 tolerated(0.23) probably_damaging(0.994) TCGA-G4-6628-01 18 33703507 33703507 A C SLC39A6 Missense_Mutation p.L364R 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 18 33775237 33775237 C A MOCOS Missense_Mutation p.H54N 0.21 deleterious(0.03) probably_damaging(0.946) TCGA-G4-6628-01 18 34327050 34327050 C T FHOD3 Missense_Mutation p.A1220V 0.18 deleterious(0) possibly_damaging(0.499) TCGA-G4-6628-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.18 TCGA-G4-6628-01 18 42456702 42456702 G T SETBP1 Intron 0.22 TCGA-G4-6628-01 18 43219782 43219782 C T SLC14A2 Silent p.F305F 0.37 TCGA-G4-6628-01 18 43505796 43505796 G A EPG5 Missense_Mutation p.R876W 0.23 deleterious(0.02) probably_damaging(0.988) TCGA-G4-6628-01 18 43796124 43796124 G A C18orf25 Missense_Mutation p.C93Y 0.21 probably_damaging(0.998) TCGA-G4-6628-01 18 44272133 44272133 T C ST8SIA5 Missense_Mutation p.K104E 0.24 benign(0.089) TCGA-G4-6628-01 18 44470622 44470622 A G PIAS2 Silent p.P140P 0.18 TCGA-G4-6628-01 18 45423149 45423149 C T SMAD2 5'UTR 0.13 TCGA-G4-6628-01 18 47313719 47313719 G A ACAA2 Missense_Mutation p.A299V 0.25 deleterious(0) probably_damaging(0.994) TCGA-G4-6628-01 18 47800579 47800579 G A MBD1 Missense_Mutation p.R375C 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 18 47802768 47802768 G A MBD1 Missense_Mutation p.R166W 0.25 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 18 48586237 48586237 G A SMAD4 Nonsense_Mutation p.W302* 0.25 TCGA-G4-6628-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.39 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 18 54591201 54591201 C A WDR7 Missense_Mutation p.P1192H 0.24 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 18 55103500 55103500 C G ONECUT2 Missense_Mutation p.H184Q 0.41 tolerated_low_confidence(0.12) possibly_damaging(0.795) TCGA-G4-6628-01 18 55992308 55992308 G A NEDD4L Silent p.G198G 0.25 TCGA-G4-6628-01 18 57364460 57364460 G A CCBE1 Missense_Mutation p.P39S 0.39 tolerated(0.19) benign(0.003) TCGA-G4-6628-01 18 60052000 60052000 C T TNFRSF11A Silent p.N528N 0.14 TCGA-G4-6628-01 18 61460422 61460423 - T SERPINB7 Frame_Shift_Ins p.S85Ffs*2 0.20 TCGA-G4-6628-01 18 6213206 6213206 C T L3MBTL4 Missense_Mutation p.R308Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 18 6912145 6912145 A T ARHGAP28 Missense_Mutation p.S569C 0.31 deleterious(0) probably_damaging(0.979) TCGA-G4-6628-01 18 6959407 6959407 G T LAMA1 Missense_Mutation p.L2571M 0.33 tolerated(0.08) probably_damaging(0.961) TCGA-G4-6628-01 18 70526092 70526092 C A NETO1 Missense_Mutation p.M146I 0.25 tolerated(0.57) benign(0.001) TCGA-G4-6628-01 18 7231739 7231739 C T LRRC30 Silent p.I201I 0.15 TCGA-G4-6628-01 18 72345840 72345840 C T ZNF407 Silent p.S955S 0.33 TCGA-G4-6628-01 18 73000440 73000440 G - TSHZ1 Frame_Shift_Del p.A983Pfs*41 0.15 TCGA-G4-6628-01 18 77804287 77804287 T C RBFA Splice_Site p.X217_splice 0.17 TCGA-G4-6628-01 18 77894542 77894542 C T ADNP2 Missense_Mutation p.P416S 0.44 tolerated(0.22) benign(0.104) TCGA-G4-6628-01 18 8783936 8783936 C T SOGA2 Missense_Mutation p.R276C 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-G4-6628-01 19 10224683 10224683 G A P2RY11 Missense_Mutation p.V132M 0.35 deleterious(0) probably_damaging(0.992) TCGA-G4-6628-01 19 10225776 10225776 C T P2RY11 3'UTR 0.28 TCGA-G4-6628-01 19 10439592 10439592 C T RAVER1 Missense_Mutation p.C178Y 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 19 1046273 1046273 G A ABCA7 Missense_Mutation p.R497H 0.19 deleterious(0.04) benign(0.139) TCGA-G4-6628-01 19 10657598 10657598 C T ATG4D Missense_Mutation p.R193C 0.35 tolerated(0.07) benign(0.002) TCGA-G4-6628-01 19 10789305 10789305 C T ILF3 Silent p.N192N 0.24 TCGA-G4-6628-01 19 11031769 11031769 C T CARM1 Silent p.G527G 0.21 TCGA-G4-6628-01 19 11354362 11354362 G A DOCK6 Missense_Mutation p.R377C 0.41 deleterious(0) possibly_damaging(0.772) TCGA-G4-6628-01 19 11998689 11998689 G A ZNF69 5'UTR 0.23 TCGA-G4-6628-01 19 12058346 12058346 C T ZNF700 Nonsense_Mutation p.Q70* 0.19 TCGA-G4-6628-01 19 12186935 12186935 A - ZNF844 Frame_Shift_Del p.K335Sfs*21 0.23 TCGA-G4-6628-01 19 12639127 12639127 C A ZNF564 Missense_Mutation p.R61I 0.23 deleterious(0.02) benign(0.001) TCGA-G4-6628-01 19 12825928 12825928 C T TNPO2 Missense_Mutation p.R235H 0.29 tolerated(0.18) benign(0.015) TCGA-G4-6628-01 19 12903751 12903751 C T JUNB 3'UTR 0.23 TCGA-G4-6628-01 19 13409445 13409445 C T CACNA1A Missense_Mutation p.R1001H 0.44 probably_damaging(0.923) TCGA-G4-6628-01 19 14003978 14003978 G A C19orf57 Missense_Mutation p.P89S 0.17 tolerated(0.26) probably_damaging(0.932) TCGA-G4-6628-01 19 14029359 14029359 G A CC2D1A Missense_Mutation p.V306M 0.29 deleterious(0.01) benign(0.22) TCGA-G4-6628-01 19 14271091 14271091 C T LPHN1 Missense_Mutation p.A550T 0.23 deleterious(0) probably_damaging(0.941) TCGA-G4-6628-01 19 14272230 14272230 G A LPHN1 Silent p.H473H 0.28 TCGA-G4-6628-01 19 14674030 14674030 G A TECR Missense_Mutation p.A27T 0.24 tolerated(0.54) benign(0.012) TCGA-G4-6628-01 19 14676655 14676655 G A TECR Missense_Mutation p.R300H 0.25 deleterious(0.03) benign(0.262) TCGA-G4-6628-01 19 14703100 14703102 GGA - CLEC17A In_Frame_Del p.E74del 0.33 TCGA-G4-6628-01 19 1496286 1496286 C T REEP6 Silent p.C117C 0.12 TCGA-G4-6628-01 19 15291861 15291861 G A NOTCH3 Missense_Mutation p.R969W 0.22 deleterious(0) possibly_damaging(0.677) TCGA-G4-6628-01 19 15366261 15366261 G A BRD4 Missense_Mutation p.R632C 0.22 possibly_damaging(0.689) TCGA-G4-6628-01 19 15507965 15507965 C T AKAP8L Missense_Mutation p.R511H 0.24 deleterious(0) possibly_damaging(0.806) TCGA-G4-6628-01 19 15512283 15512283 C T AKAP8L Missense_Mutation p.R165H 0.19 deleterious(0) benign(0.018) TCGA-G4-6628-01 19 15760745 15760745 G A CYP4F3 Missense_Mutation p.A224T 0.20 tolerated(0.09) benign(0.274) TCGA-G4-6628-01 19 1585063 1585063 G A MBD3 Silent p.N87N 0.25 TCGA-G4-6628-01 19 15918562 15918562 C T OR10H1 Missense_Mutation p.A96T 0.19 deleterious(0) benign(0.128) TCGA-G4-6628-01 19 16926026 16926026 G A NWD1 3'UTR 0.29 TCGA-G4-6628-01 19 16962258 16962258 G A SIN3B Silent p.V254V 0.25 TCGA-G4-6628-01 19 16962326 16962326 C T SIN3B Missense_Mutation p.P277L 0.33 tolerated(0.08) benign(0.066) TCGA-G4-6628-01 19 17361126 17361126 C T USHBP1 Missense_Mutation p.E674K 0.28 deleterious(0.05) benign(0.019) TCGA-G4-6628-01 19 17631908 17631908 G A PGLS 3'UTR 0.37 TCGA-G4-6628-01 19 17943377 17943377 T C JAK3 Silent p.A877A 0.15 TCGA-G4-6628-01 19 1796778 1796778 C T ATP8B3 Missense_Mutation p.R562Q 0.31 tolerated(0.43) benign(0.129) TCGA-G4-6628-01 19 17973797 17973797 G A RPL18A Silent p.A133A 0.18 TCGA-G4-6628-01 19 18377835 18377835 C T KIAA1683 Missense_Mutation p.R172H 0.36 deleterious(0) probably_damaging(0.987) TCGA-G4-6628-01 19 18378040 18378040 C T KIAA1683 Missense_Mutation p.A104T 0.20 deleterious(0) benign(0.039) TCGA-G4-6628-01 19 18546855 18546855 C T ISYNA1 Missense_Mutation p.G321D 0.23 tolerated(0.22) benign(0.349) TCGA-G4-6628-01 19 18853817 18853817 C T CRTC1 Missense_Mutation p.T75I 0.29 deleterious(0.01) benign(0.088) TCGA-G4-6628-01 19 19121079 19121079 G A SUGP2 Silent p.S641S 0.16 TCGA-G4-6628-01 19 19256500 19256500 G A MEF2B 3'Flank 0.36 TCGA-G4-6628-01 19 19460025 19460025 C T MAU2 Missense_Mutation p.R474C 0.26 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 19 1952936 1952936 C T CSNK1G2 Intron 0.29 TCGA-G4-6628-01 19 19675818 19675818 C A PBX4 Silent p.T283T 0.20 TCGA-G4-6628-01 19 1987636 1987636 G T BTBD2 Missense_Mutation p.H348Q 0.26 deleterious(0.01) possibly_damaging(0.866) TCGA-G4-6628-01 19 2343237 2343237 G A SPPL2B RNA 0.28 TCGA-G4-6628-01 19 2351449 2351449 C A LLfos-48D6.1 3'Flank 0.34 TCGA-G4-6628-01 19 23845886 23845886 C T ZNF675 Silent p.R26R 0.19 TCGA-G4-6628-01 19 24309166 24309166 T A ZNF254 Missense_Mutation p.L122I 0.18 tolerated(0.05) benign(0.275) TCGA-G4-6628-01 19 2520634 2520634 C T GNG7 Missense_Mutation p.R18H 0.28 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 19 2737307 2737307 G A SLC39A3 5'UTR 0.27 TCGA-G4-6628-01 19 30934653 30934653 G A ZNF536 Missense_Mutation p.A62T 0.26 tolerated_low_confidence(1) benign(0.003) TCGA-G4-6628-01 19 31025824 31025824 C A ZNF536 Silent p.G747G 0.24 TCGA-G4-6628-01 19 31040262 31040262 G A ZNF536 Missense_Mutation p.A1246T 0.30 deleterious_low_confidence(0.05) benign(0.001) TCGA-G4-6628-01 19 31769725 31769725 G T TSHZ3 Missense_Mutation p.S325Y 0.21 tolerated(0.85) benign(0.031) TCGA-G4-6628-01 19 3179030 3179030 G T S1PR4 Missense_Mutation p.W80C 0.28 tolerated(0.1) probably_damaging(0.999) TCGA-G4-6628-01 19 33621139 33621139 G A GPATCH1 3'UTR 0.31 TCGA-G4-6628-01 19 33696192 33696192 C A LRP3 Silent p.R172R 0.27 TCGA-G4-6628-01 19 33703794 33703794 G - SLC7A10 Frame_Shift_Del p.T158Pfs*12 0.20 TCGA-G4-6628-01 19 33870932 33870932 G - CEBPG 3'UTR 0.23 TCGA-G4-6628-01 19 3546370 3546370 C T MFSD12 Silent p.A359A 0.31 TCGA-G4-6628-01 19 35850117 35850117 G A FFAR3 Missense_Mutation p.V109M 0.20 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 19 36218128 36218128 C T KMT2B Nonsense_Mutation p.Q1359* 0.24 TCGA-G4-6628-01 19 36494563 36494563 C A SYNE4 Missense_Mutation p.R328M 0.26 deleterious(0.04) possibly_damaging(0.831) TCGA-G4-6628-01 19 36496319 36496319 G A SYNE4 Silent p.S296S 0.31 TCGA-G4-6628-01 19 36509879 36509879 G - CLIP3 Frame_Shift_Del p.S369Pfs*136 0.26 TCGA-G4-6628-01 19 36592212 36592212 G A WDR62 Silent p.P988P 0.28 TCGA-G4-6628-01 19 37619818 37619818 C T ZNF420 Missense_Mutation p.P642L 0.28 deleterious(0.03) benign(0) TCGA-G4-6628-01 19 38102498 38102498 A - ZNF540 Frame_Shift_Del p.S108Vfs*6 0.22 TCGA-G4-6628-01 19 38188959 38188959 A G ZNF607 Silent p.H691H 0.33 TCGA-G4-6628-01 19 38384105 38384105 C T WDR87 Silent p.V707V 0.24 TCGA-G4-6628-01 19 38958333 38958333 T C RYR1 Missense_Mutation p.Y1088H 0.17 probably_damaging(1) TCGA-G4-6628-01 19 39575845 39575845 C A PAPL 5'UTR 0.46 TCGA-G4-6628-01 19 39663913 39663913 C - PAK4 Frame_Shift_Del p.Q189Sfs*180 0.29 TCGA-G4-6628-01 19 3979940 3979940 C T EEF2 Missense_Mutation p.A491T 0.21 deleterious(0) benign(0.314) TCGA-G4-6628-01 19 39914206 39914206 G A PLEKHG2 Missense_Mutation p.A838T 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6628-01 19 39959487 39959487 G A SUPT5H Missense_Mutation p.A377T 0.30 tolerated(0.65) benign(0.029) TCGA-G4-6628-01 19 39989586 39989586 G A DLL3 5'Flank 0.29 TCGA-G4-6628-01 19 40582115 40582115 A T ZNF780A Missense_Mutation p.D79E 0.22 tolerated(0.1) benign(0.052) TCGA-G4-6628-01 19 40715080 40715080 C - MAP3K10 Frame_Shift_Del p.P504Lfs*10 0.30 TCGA-G4-6628-01 19 40720989 40720989 G A MAP3K10 Silent p.P885P 0.23 TCGA-G4-6628-01 19 40900925 40900925 C T PRX Missense_Mutation p.A1112T 0.33 tolerated(0.21) benign(0.005) TCGA-G4-6628-01 19 4099215 4099215 G - MAP2K2 Frame_Shift_Del p.R303Afs*24 0.41 TCGA-G4-6628-01 19 41239114 41239114 C T ITPKC Missense_Mutation p.R507W 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 19 41712380 41712380 C T CYP2S1 Missense_Mutation p.T501M 0.33 tolerated_low_confidence(0.07) benign(0.076) TCGA-G4-6628-01 19 4207952 4207953 - A ANKRD24 Frame_Shift_Ins p.S274Ifs*10 0.33 TCGA-G4-6628-01 19 42794790 42794790 G T CIC Nonsense_Mutation p.G624* 0.21 TCGA-G4-6628-01 19 42840107 42840107 G A MEGF8 Missense_Mutation p.V285M 0.27 deleterious(0.03) possibly_damaging(0.861) TCGA-G4-6628-01 19 43233964 43233964 G A PSG3 Silent p.G318G 0.19 TCGA-G4-6628-01 19 4475560 4475560 G A HDGFRP2 Missense_Mutation p.A90T 0.20 deleterious(0.01) possibly_damaging(0.695) TCGA-G4-6628-01 19 46215737 46215737 C T FBXO46 Silent p.P339P 0.21 TCGA-G4-6628-01 19 46375870 46375870 A G FOXA3 Missense_Mutation p.N203D 0.15 deleterious(0) possibly_damaging(0.797) TCGA-G4-6628-01 19 46832587 46832587 C - HIF3A Frame_Shift_Del p.R523Vfs*27 0.26 TCGA-G4-6628-01 19 47236435 47236435 G A STRN4 Missense_Mutation p.R200C 0.33 deleterious(0) possibly_damaging(0.721) TCGA-G4-6628-01 19 47503861 47503861 G A ARHGAP35 Silent p.S1472S 0.34 TCGA-G4-6628-01 19 47878931 47878931 C - DHX34 Frame_Shift_Del p.P760Qfs*12 0.35 TCGA-G4-6628-01 19 47880393 47880393 T C DHX34 Missense_Mutation p.L879P 0.24 deleterious(0) probably_damaging(0.98) TCGA-G4-6628-01 19 47951365 47951365 G A SLC8A2 Silent p.G488G 0.50 TCGA-G4-6628-01 19 47960438 47960438 G A SLC8A2 Silent p.G363G 0.23 TCGA-G4-6628-01 19 48229116 48229116 C T EHD2 Missense_Mutation p.L184F 0.22 tolerated(0.1) possibly_damaging(0.878) TCGA-G4-6628-01 19 48244617 48244617 C T EHD2 Silent p.H520H 0.22 TCGA-G4-6628-01 19 49012108 49012108 C A LMTK3 Missense_Mutation p.R215M 0.16 probably_damaging(0.998) TCGA-G4-6628-01 19 49356995 49356995 G A PLEKHA4 Missense_Mutation p.R424C 0.28 deleterious(0) probably_damaging(0.957) TCGA-G4-6628-01 19 49935856 49935857 - T SLC17A7 Frame_Shift_Ins p.I357Nfs*105 0.23 TCGA-G4-6628-01 19 50119439 50119439 G A PRR12 Silent p.S1820S 0.30 TCGA-G4-6628-01 19 50139947 50139947 G A RRAS Missense_Mutation p.R128W 0.31 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 19 50149992 50149992 T C SCAF1 Missense_Mutation p.L128P 0.09 unknown(0) TCGA-G4-6628-01 19 50333113 50333113 C - MED25 Frame_Shift_Del p.P201Rfs*13 0.17 TCGA-G4-6628-01 19 50363286 50363286 G A PTOV1 Missense_Mutation p.R362H 0.31 deleterious(0.02) probably_damaging(0.916) TCGA-G4-6628-01 19 50399275 50399275 T C IL4I1 Missense_Mutation p.S39G 0.21 tolerated(0.42) benign(0.003) TCGA-G4-6628-01 19 50461670 50461670 G - SIGLEC11 Frame_Shift_Del p.S508Afs*11 0.26 TCGA-G4-6628-01 19 50753776 50753777 - C MYH14 Frame_Shift_Ins p.G557Wfs*8 0.22 TCGA-G4-6628-01 19 51447042 51447042 C T KLK5 Missense_Mutation p.G243S 0.26 deleterious(0) possibly_damaging(0.878) TCGA-G4-6628-01 19 52090575 52090575 G A ZNF175 Missense_Mutation p.G331S 0.26 tolerated(0.15) benign(0.018) TCGA-G4-6628-01 19 52227189 52227189 C T HAS1 5'UTR 0.32 TCGA-G4-6628-01 19 52376050 52376050 A G ZNF577 Missense_Mutation p.L398S 0.23 tolerated(0.15) benign(0.051) TCGA-G4-6628-01 19 5240214 5240214 C A PTPRS Missense_Mutation p.R567L 0.44 tolerated(0.22) possibly_damaging(0.647) TCGA-G4-6628-01 19 52538149 52538149 A - ZNF432 Frame_Shift_Del p.F261Lfs*12 0.09 TCGA-G4-6628-01 19 52785385 52785385 G A ZNF766 Missense_Mutation p.V14M 0.25 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 19 53303058 53303058 C T ZNF28 Silent p.Q680Q 0.30 TCGA-G4-6628-01 19 53385134 53385134 A G ZNF320 Missense_Mutation p.I82T 0.27 tolerated(0.11) benign(0.01) TCGA-G4-6628-01 19 53884159 53884159 T C ZNF525 Silent p.H109H 0.27 TCGA-G4-6628-01 19 54377682 54377682 C T MYADM Missense_Mutation p.T300M 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 19 54720888 54720888 C T LILRB3 3'UTR 0.26 TCGA-G4-6628-01 19 54823286 54823286 G T LILRA5 Missense_Mutation p.P86H 0.26 tolerated(0.06) benign(0.116) TCGA-G4-6628-01 19 55147897 55147897 G - AC009892.10 Intron 0.25 TCGA-G4-6628-01 19 55221568 55221568 C A AC098784.2 3'Flank 0.22 TCGA-G4-6628-01 19 55281304 55281304 T C KIR2DL1 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) possibly_damaging(0.769) TCGA-G4-6628-01 19 55670660 55670660 C T DNAAF3 Missense_Mutation p.V533I 0.23 tolerated_low_confidence(0.26) benign(0.088) TCGA-G4-6628-01 19 55874531 55874531 C T FAM71E2 5'UTR 0.33 TCGA-G4-6628-01 19 56104082 56104082 G A FIZ1 Missense_Mutation p.R409C 0.29 deleterious(0.04) possibly_damaging(0.85) TCGA-G4-6628-01 19 56156878 56156878 G A ZNF581 3'UTR 0.24 TCGA-G4-6628-01 19 5616267 5616267 G A SAFB2 Missense_Mutation p.A140V 0.26 deleterious(0) benign(0.002) TCGA-G4-6628-01 19 56206682 56206682 C T EPN1 Missense_Mutation p.P650L 0.42 tolerated(0.1) benign(0.177) TCGA-G4-6628-01 19 56220286 56220286 G A NLRP9 Missense_Mutation p.L990F 0.20 tolerated(0.55) benign(0.003) TCGA-G4-6628-01 19 56370508 56370508 C T NLRP4 Silent p.N583N 0.22 TCGA-G4-6628-01 19 5641919 5641919 G A SAFB Missense_Mutation p.E170K 0.24 deleterious(0.03) benign(0.041) TCGA-G4-6628-01 19 56701251 56701251 T C ZSCAN5B Missense_Mutation p.Q478R 0.21 tolerated(0.47) benign(0.004) TCGA-G4-6628-01 19 56733190 56733190 G A ZSCAN5A Silent p.D415D 0.30 TCGA-G4-6628-01 19 5696348 5696348 G A LONP1 Missense_Mutation p.P603L 0.26 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 19 57133307 57133307 G A ZNF71 Missense_Mutation p.V218M 0.21 deleterious(0.01) benign(0.44) TCGA-G4-6628-01 19 58352778 58352778 G A ZNF587B Missense_Mutation p.E246K 0.25 tolerated(0.15) possibly_damaging(0.658) TCGA-G4-6628-01 19 58578993 58578993 C T ZNF135 Missense_Mutation p.P405S 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-G4-6628-01 19 59060863 59060863 G T TRIM28 Missense_Mutation p.G610C 0.36 deleterious(0) benign(0.187) TCGA-G4-6628-01 19 5908932 5908932 T C VMAC Silent p.L97L 0.37 TCGA-G4-6628-01 19 5917580 5917580 G A RANBP3 3'UTR 0.27 TCGA-G4-6628-01 19 623505 623505 G A POLRMT Silent p.C413C 0.26 TCGA-G4-6628-01 19 6694575 6694575 G - C3 Frame_Shift_Del p.S1008Rfs*8 0.24 TCGA-G4-6628-01 19 6733179 6733179 G A GPR108 Missense_Mutation p.T286M 0.43 deleterious(0.02) benign(0.067) TCGA-G4-6628-01 19 6746059 6746059 C - TRIP10 Intron 0.32 TCGA-G4-6628-01 19 6754939 6754939 C T SH2D3A Missense_Mutation p.R295Q 0.22 tolerated(0.06) benign(0.148) TCGA-G4-6628-01 19 694955 694955 G C PRSS57 Missense_Mutation p.A32G 0.27 tolerated(0.28) benign(0.002) TCGA-G4-6628-01 19 7620147 7620147 G A PNPLA6 Missense_Mutation p.E954K 0.24 tolerated(0.23) benign(0.036) TCGA-G4-6628-01 19 7705633 7705633 T C STXBP2 Missense_Mutation p.I88T 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 19 8615574 8615574 G A MYO1F Missense_Mutation p.A259V 0.11 deleterious(0.02) possibly_damaging(0.901) TCGA-G4-6628-01 19 871041 871041 C T MED16 Missense_Mutation p.A771T 0.26 tolerated(0.49) benign(0.001) TCGA-G4-6628-01 19 9068726 9068726 C T MUC16 Silent p.L6240L 0.16 TCGA-G4-6628-01 19 9089998 9089998 G T MUC16 Missense_Mutation p.P606H 0.28 unknown(0) TCGA-G4-6628-01 19 9764093 9764093 A C ZNF562 Missense_Mutation p.N271K 0.24 tolerated(0.37) possibly_damaging(0.655) TCGA-G4-6628-01 1 100614418 100614418 A T LRRC39 3'UTR 0.28 TCGA-G4-6628-01 1 100623818 100623818 A G LRRC39 Missense_Mutation p.V161A 0.30 tolerated(0.53) possibly_damaging(0.757) TCGA-G4-6628-01 1 10165719 10165720 TC - UBE4B Frame_Shift_Del p.L244Afs*26 0.20 TCGA-G4-6628-01 1 10231304 10231304 C T UBE4B Missense_Mutation p.P1148S 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 103345387 103345387 T - COL11A1 Frame_Shift_Del p.N1709Ifs*76 0.21 TCGA-G4-6628-01 1 10421834 10421834 C T KIF1B Missense_Mutation p.R1373C 0.22 deleterious(0) possibly_damaging(0.804) TCGA-G4-6628-01 1 10434407 10434407 C A KIF1B Silent p.P1614P 0.32 TCGA-G4-6628-01 1 10659358 10659358 C T PEX14 Missense_Mutation p.S78L 0.20 tolerated(0.41) benign(0.004) TCGA-G4-6628-01 1 109242701 109242701 C T PRPF38B 3'UTR 0.21 TCGA-G4-6628-01 1 109439553 109439553 G A GPSM2 Missense_Mutation p.A42T 0.33 deleterious(0.04) benign(0.153) TCGA-G4-6628-01 1 109822531 109822531 G A PSRC1 3'UTR 0.50 TCGA-G4-6628-01 1 110199333 110199333 G A GSTM4 Splice_Site p.X13_splice 0.24 TCGA-G4-6628-01 1 110559337 110559337 G A AHCYL1 Silent p.V316V 0.21 TCGA-G4-6628-01 1 11128120 11128120 T - EXOSC10 Frame_Shift_Del p.I858Lfs*? 0.23 TCGA-G4-6628-01 1 114225696 114225696 A - MAGI3 Frame_Shift_Del p.K1170Rfs*5 0.20 TCGA-G4-6628-01 1 114680475 114680475 C T SYT6 Missense_Mutation p.R153H 0.25 deleterious(0.03) benign(0.001) TCGA-G4-6628-01 1 114680572 114680572 G A SYT6 Missense_Mutation p.R121C 0.24 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 115537402 115537402 A - SYCP1 Frame_Shift_Del p.K931Rfs*6 0.19 TCGA-G4-6628-01 1 115829297 115829297 A G NGF Silent p.L40L 0.17 TCGA-G4-6628-01 1 116939235 116939235 G T ATP1A1 Nonsense_Mutation p.G618* 0.32 TCGA-G4-6628-01 1 117078659 117078659 G A CD58 Nonsense_Mutation p.Q186* 0.25 TCGA-G4-6628-01 1 118168917 118168917 C - FAM46C 3'UTR 0.22 TCGA-G4-6628-01 1 1190531 1190531 C T UBE2J2 3'Flank 0.21 TCGA-G4-6628-01 1 119964760 119964760 A G HSD3B2 Silent p.S212S 0.24 TCGA-G4-6628-01 1 120479966 120479966 G A NOTCH2 Missense_Mutation p.A1154V 0.22 tolerated(0.17) benign(0.01) TCGA-G4-6628-01 1 12389930 12389930 G A VPS13D Missense_Mutation p.A2748T 0.30 probably_damaging(0.99) TCGA-G4-6628-01 1 12429619 12429619 C T VPS13D Missense_Mutation p.T3557I 0.19 benign(0.001) TCGA-G4-6628-01 1 1247233 1247233 C T CPSF3L 3'UTR 0.26 TCGA-G4-6628-01 1 1247977 1247977 C T CPSF3L Silent p.A472A 0.32 TCGA-G4-6628-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.45 TCGA-G4-6628-01 1 12921530 12921530 C A PRAMEF2 Missense_Mutation p.L441M 0.31 tolerated(0.1) probably_damaging(0.914) TCGA-G4-6628-01 1 13802514 13802514 G A LRRC38 Missense_Mutation p.R229C 0.18 tolerated(0.11) benign(0.443) TCGA-G4-6628-01 1 13839961 13839961 C T LRRC38 Missense_Mutation p.R43H 0.20 deleterious(0.05) possibly_damaging(0.883) TCGA-G4-6628-01 1 1431172 1431173 - C ATAD3B Frame_Shift_Ins p.G644Rfs*10 0.27 TCGA-G4-6628-01 1 145075752 145075752 C T PDE4DIP Silent p.T37T 0.10 TCGA-G4-6628-01 1 145584579 145584579 T A PIAS3 Missense_Mutation p.Y516N 0.25 deleterious(0) possibly_damaging(0.797) TCGA-G4-6628-01 1 145763625 145763626 - A PDZK1 3'UTR 0.15 TCGA-G4-6628-01 1 146656151 146656151 C T FMO5 3'Flank 0.25 TCGA-G4-6628-01 1 147096424 147096424 C T BCL9 Silent p.P1315P 0.23 TCGA-G4-6628-01 1 150679129 150679129 T - HORMAD1 Frame_Shift_Del p.N235Ifs*12 0.17 TCGA-G4-6628-01 1 151112158 151112158 C A SEMA6C Missense_Mutation p.D85Y 0.29 deleterious(0) probably_damaging(0.944) TCGA-G4-6628-01 1 151397523 151397523 G A POGZ Missense_Mutation p.P365S 0.33 tolerated(0.23) benign(0.102) TCGA-G4-6628-01 1 152129262 152129262 G A RPTN Nonsense_Mutation p.Q105* 0.24 TCGA-G4-6628-01 1 152325257 152325257 G A FLG2 Missense_Mutation p.H1669Y 0.23 benign(0.403) TCGA-G4-6628-01 1 153906623 153906623 C T DENND4B Missense_Mutation p.G977S 0.22 tolerated(0.24) probably_damaging(0.999) TCGA-G4-6628-01 1 154125255 154125255 C T NUP210L Silent p.T99T 0.24 TCGA-G4-6628-01 1 154530722 154530722 C T UBE2Q1 Missense_Mutation p.R103H 0.16 tolerated(0.15) benign(0.025) TCGA-G4-6628-01 1 155005923 155005923 A G DCST2 Silent p.P85P 0.10 TCGA-G4-6628-01 1 155006967 155006967 C T DCST1 Missense_Mutation p.R40C 0.22 deleterious(0.03) probably_damaging(0.972) TCGA-G4-6628-01 1 155291553 155291553 G A RUSC1 5'UTR 0.32 TCGA-G4-6628-01 1 155629555 155629555 G A YY1AP1 Missense_Mutation p.P854S 0.26 tolerated_low_confidence(0.13) benign(0.172) TCGA-G4-6628-01 1 155747486 155747487 TG - GON4L Frame_Shift_Del p.Q673Efs*2 0.19 TCGA-G4-6628-01 1 155911601 155911601 A T RXFP4 Missense_Mutation p.K34I 0.27 tolerated(0.08) benign(0.024) TCGA-G4-6628-01 1 156046480 156046480 G A MEX3A Missense_Mutation p.P483L 0.22 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 1 156244415 156244415 G A SMG5 Nonsense_Mutation p.R173* 0.22 TCGA-G4-6628-01 1 156263913 156263913 A G C1orf85 Missense_Mutation p.S232P 0.20 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 1 156555594 156555594 G T TTC24 Missense_Mutation p.V516F 0.17 tolerated_low_confidence(0.2) benign(0.118) TCGA-G4-6628-01 1 156616870 156616870 G A BCAN Silent p.A123A 0.31 TCGA-G4-6628-01 1 156814343 156814343 G - INSRR Frame_Shift_Del p.P883Lfs*74 0.19 TCGA-G4-6628-01 1 156821212 156821212 G A INSRR Nonsense_Mutation p.Q367* 0.21 TCGA-G4-6628-01 1 156905959 156905959 T - ARHGEF11 Intron 0.17 TCGA-G4-6628-01 1 156912567 156912567 G A ARHGEF11 Missense_Mutation p.R1081W 0.22 deleterious(0) probably_damaging(0.994) TCGA-G4-6628-01 1 157485359 157485359 G T FCRL5 3'UTR 0.47 TCGA-G4-6628-01 1 157772317 157772317 C A FCRL1 Missense_Mutation p.G153C 0.31 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 1 158263264 158263264 T C CD1C Nonstop_Mutation p.*334Rext*5 0.22 TCGA-G4-6628-01 1 158325720 158325720 G A CD1E Missense_Mutation p.M243I 0.32 deleterious(0.01) benign(0.392) TCGA-G4-6628-01 1 158532668 158532668 C T OR6P1 Missense_Mutation p.A243T 0.32 deleterious(0.02) benign(0.004) TCGA-G4-6628-01 1 158622438 158622438 C T SPTA1 Missense_Mutation p.R1065H 0.15 tolerated(0.64) benign(0.003) TCGA-G4-6628-01 1 158656290 158656290 C A SPTA1 Missense_Mutation p.K6N 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.654) TCGA-G4-6628-01 1 158735745 158735745 G A OR6N1 Missense_Mutation p.S243F 0.19 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 1 15874769 15874769 C T DNAJC16 Missense_Mutation p.T290I 0.19 deleterious(0.04) benign(0.018) TCGA-G4-6628-01 1 15890443 15890443 G A DNAJC16 Missense_Mutation p.R453H 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 1 159842260 159842260 C T CCDC19 3'UTR 0.22 TCGA-G4-6628-01 1 159858149 159858149 G A CCDC19 Missense_Mutation p.A137V 0.20 tolerated(0.09) benign(0.174) TCGA-G4-6628-01 1 160769549 160769549 G T LY9 Missense_Mutation p.R44I 0.18 tolerated(0.06) possibly_damaging(0.806) TCGA-G4-6628-01 1 161641195 161641195 G A FCGR2B Silent p.K49K 0.14 TCGA-G4-6628-01 1 16258311 16258311 G - SPEN Frame_Shift_Del p.G1860Efs*9 0.22 TCGA-G4-6628-01 1 16344314 16344314 A - HSPB7 Frame_Shift_Del p.S49Pfs*30 0.20 TCGA-G4-6628-01 1 16357010 16357010 C T CLCNKA Missense_Mutation p.A488V 0.28 tolerated(0.74) benign(0.116) TCGA-G4-6628-01 1 16362868 16386126 1:16362868-16386126 - CLCNKB large deletion 0.12 TCGA-G4-6628-01 1 16375037 16375037 G A CLCNKB Silent p.A205A 0.12 TCGA-G4-6628-01 1 16464828 16464828 G A EPHA2 Silent p.C307C 0.32 TCGA-G4-6628-01 1 165398066 165398066 G - RXRG Frame_Shift_Del p.L63Sfs*38 0.14 TCGA-G4-6628-01 1 165649736 165649736 G T ALDH9A1 Silent p.P259P 0.25 TCGA-G4-6628-01 1 166959192 166959192 C A MAEL Intron 0.47 TCGA-G4-6628-01 1 169076087 169076089 AGG - ATP1B1 In_Frame_Del p.E9del 0.34 TCGA-G4-6628-01 1 170136716 170136716 G A METTL11B Missense_Mutation p.V224M 0.23 tolerated(0.36) benign(0.314) TCGA-G4-6628-01 1 17263320 17263320 C T CROCC Missense_Mutation p.A382V 0.15 benign(0.216) TCGA-G4-6628-01 1 17328569 17328569 C G ATP13A2 Missense_Mutation p.S222T 0.20 tolerated(0.48) benign(0.002) TCGA-G4-6628-01 1 17395486 17395486 G A PADI2 3'UTR 0.29 TCGA-G4-6628-01 1 175365879 175365879 G A TNR Silent p.D347D 0.17 TCGA-G4-6628-01 1 176525981 176525981 G A PAPPA2 Missense_Mutation p.A175T 0.20 tolerated_low_confidence(1) benign(0) TCGA-G4-6628-01 1 17666244 17666244 C T PADI4 Silent p.N196N 0.17 TCGA-G4-6628-01 1 176863818 176863818 G T ASTN1 Silent p.P940P 0.22 TCGA-G4-6628-01 1 177199242 177199242 G A BRINP2 Missense_Mutation p.R77Q 0.16 tolerated(0.16) probably_damaging(0.967) TCGA-G4-6628-01 1 17740120 17740120 G A RCC2 Missense_Mutation p.R374C 0.34 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 1 17748778 17748778 G A RCC2 Missense_Mutation p.S222F 0.12 deleterious(0.02) possibly_damaging(0.596) TCGA-G4-6628-01 1 178426815 178426815 C T RASAL2 Intron 0.22 TCGA-G4-6628-01 1 179363127 179363127 G A AXDND1 Missense_Mutation p.R318H 0.30 tolerated(0.63) probably_damaging(0.954) TCGA-G4-6628-01 1 179452289 179452289 T C AXDND1 Missense_Mutation p.M675T 0.23 deleterious(0) benign(0.227) TCGA-G4-6628-01 1 179783067 179783067 C T FAM163A Missense_Mutation p.P83S 0.25 tolerated(0.54) benign(0.009) TCGA-G4-6628-01 1 179834367 179834368 AG - TOR1AIP2 Intron 0.25 TCGA-G4-6628-01 1 18023926 18023926 C T ARHGEF10L 3'UTR 0.44 TCGA-G4-6628-01 1 180832984 180832984 C T XPR1 Missense_Mutation p.R548W 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 180849277 180849277 C T XPR1 Missense_Mutation p.A625V 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 1 182638763 182638763 G A RGS8 Intron 0.27 TCGA-G4-6628-01 1 182841515 182841515 A G DHX9 Missense_Mutation p.Y534C 0.17 deleterious(0) probably_damaging(0.946) TCGA-G4-6628-01 1 186084508 186084508 G A HMCN1 Silent p.G3841G 0.31 TCGA-G4-6628-01 1 18618450 18618450 C T IGSF21 Nonsense_Mutation p.R92* 0.26 TCGA-G4-6628-01 1 19465665 19465665 G A UBR4 Silent p.T2881T 0.25 TCGA-G4-6628-01 1 19653907 19653907 G A PQLC2 Splice_Site p.X268_splice 0.35 TCGA-G4-6628-01 1 196645143 196645143 T C CFH Silent p.N125N 0.18 TCGA-G4-6628-01 1 196654201 196654201 A G CFH Silent p.S266S 0.25 TCGA-G4-6628-01 1 196682931 196682931 C T CFH Missense_Mutation p.A468V 0.25 tolerated(0.73) benign(0.006) TCGA-G4-6628-01 1 19705035 19705035 G T CAPZB Missense_Mutation p.L110M 0.20 tolerated(0.46) probably_damaging(0.99) TCGA-G4-6628-01 1 197091695 197091695 C T ASPM Missense_Mutation p.G1141S 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 197128418 197128418 C T ZBTB41 3'UTR 0.32 TCGA-G4-6628-01 1 197874983 197874983 G A C1orf53 Missense_Mutation p.A108T 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-G4-6628-01 1 198828250 198828250 G A MIR181A1 RNA 0.38 TCGA-G4-6628-01 1 19992603 19992603 C A HTR6 Silent p.L119L 0.24 TCGA-G4-6628-01 1 200377286 200377286 A G ZNF281 Silent p.L516L 0.36 TCGA-G4-6628-01 1 200878021 200878021 C - C1orf106 Frame_Shift_Del p.Y248Mfs*72 0.18 TCGA-G4-6628-01 1 200957975 200957975 T C KIF21B Missense_Mutation p.N1073D 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-G4-6628-01 1 20250061 20250061 G - PLA2G2E 5'UTR 0.27 TCGA-G4-6628-01 1 203054902 203054902 C G MYOG Missense_Mutation p.G63A 0.32 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 1 203316470 203316470 G - FMOD Frame_Shift_Del p.P310Qfs*31 0.23 TCGA-G4-6628-01 1 203677055 203677055 C T ATP2B4 Silent p.T460T 0.31 TCGA-G4-6628-01 1 204416622 204416622 G A PIK3C2B Missense_Mutation p.L811F 0.20 deleterious(0.04) probably_damaging(1) TCGA-G4-6628-01 1 20490648 20490648 C T PLA2G2C Missense_Mutation p.G96R 0.33 tolerated(0.36) benign(0.015) TCGA-G4-6628-01 1 205899109 205899109 C T SLC26A9 Missense_Mutation p.A210T 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 20669767 20669767 C A VWA5B1 Missense_Mutation p.P836Q 0.19 tolerated(0.73) benign(0.038) TCGA-G4-6628-01 1 206757784 206757784 G A RASSF5 Silent p.V252V 0.32 TCGA-G4-6628-01 1 206821265 206821265 G A DYRK3 Missense_Mutation p.R241H 0.35 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 1 206972256 206972256 C T IL19 Missense_Mutation p.A6V 0.18 deleterious_low_confidence(0.01) benign(0) TCGA-G4-6628-01 1 207642147 207642147 G A CR2 Missense_Mutation p.A213T 0.18 deleterious(0.01) possibly_damaging(0.891) TCGA-G4-6628-01 1 20964556 20964556 A C PINK1 Missense_Mutation p.E203D 0.41 tolerated(0.18) benign(0.002) TCGA-G4-6628-01 1 20979452 20979452 C T DDOST Missense_Mutation p.V336M 0.24 tolerated(0.06) possibly_damaging(0.879) TCGA-G4-6628-01 1 209796839 209796839 C T LAMB3 Intron 0.13 TCGA-G4-6628-01 1 210329220 210329220 G A SYT14 Missense_Mutation p.S485N 0.14 deleterious(0.03) possibly_damaging(0.709) TCGA-G4-6628-01 1 21042061 21042061 C T KIF17 Missense_Mutation p.M101I 0.27 deleterious(0) possibly_damaging(0.896) TCGA-G4-6628-01 1 210857325 210857325 T C KCNH1 Silent p.R756R 0.36 TCGA-G4-6628-01 1 210857434 210857434 C T KCNH1 Missense_Mutation p.R720H 0.31 tolerated(0.12) benign(0.302) TCGA-G4-6628-01 1 2116241 2116241 C T C1orf86 3'Flank 0.24 TCGA-G4-6628-01 1 211952347 211952347 G A LPGAT1 Missense_Mutation p.T256M 0.30 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 1 214171100 214171100 C T PROX1 Missense_Mutation p.R408C 0.14 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 1 215760007 215760007 G - KCTD3 Frame_Shift_Del p.G267Efs*15 0.20 TCGA-G4-6628-01 1 216138765 216138765 T C USH2A Silent p.K2338K 0.30 TCGA-G4-6628-01 1 217793421 217793421 G A GPATCH2 Silent p.R159R 0.31 TCGA-G4-6628-01 1 21808158 21808158 C T NBPF3 Missense_Mutation p.S501L 0.22 tolerated(1) benign(0.005) TCGA-G4-6628-01 1 218520160 218520160 G A TGFB2 Silent p.A39A 0.27 TCGA-G4-6628-01 1 22109324 22109324 C T USP48 Missense_Mutation p.V43M 0.34 tolerated(0.08) benign(0.097) TCGA-G4-6628-01 1 222717069 222717069 C T HHIPL2 Missense_Mutation p.V262M 0.27 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 1 222721332 222721333 - G HHIPL2 Frame_Shift_Ins p.W19Lfs*41 0.20 TCGA-G4-6628-01 1 223176589 223176589 C T DISP1 Missense_Mutation p.A617V 0.31 tolerated(0.06) possibly_damaging(0.818) TCGA-G4-6628-01 1 223178519 223178519 C T DISP1 Silent p.T1260T 0.25 TCGA-G4-6628-01 1 22456133 22456133 C T WNT4 Missense_Mutation p.V97I 0.20 tolerated(0.08) possibly_damaging(0.495) TCGA-G4-6628-01 1 226055727 226055727 A G TMEM63A Silent p.D125D 0.20 TCGA-G4-6628-01 1 226127184 226127184 C A LEFTY2 Missense_Mutation p.R205M 0.13 tolerated(0.05) possibly_damaging(0.705) TCGA-G4-6628-01 1 228111998 228111998 A G WNT9A Silent p.D152D 0.19 TCGA-G4-6628-01 1 228432099 228432099 C T OBSCN Missense_Mutation p.T1195M 0.30 benign(0.353) TCGA-G4-6628-01 1 228459853 228459853 C A OBSCN Missense_Mutation p.Q1973K 0.31 benign(0.016) TCGA-G4-6628-01 1 228464308 228464308 G A OBSCN Silent p.V2501V 0.29 TCGA-G4-6628-01 1 228506777 228506777 C T OBSCN Missense_Mutation p.A5732V 0.29 benign(0.082) TCGA-G4-6628-01 1 228525838 228525838 G T OBSCN Missense_Mutation p.R6622M 0.31 probably_damaging(0.957) TCGA-G4-6628-01 1 228595842 228595842 A G TRIM17 3'UTR 0.23 TCGA-G4-6628-01 1 228602465 228602465 G A TRIM17 Silent p.H103H 0.24 TCGA-G4-6628-01 1 229666080 229666080 C T ABCB10 Missense_Mutation p.R504H 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 230410254 230410254 C T GALNT2 Missense_Mutation p.R502W 0.18 tolerated(0.18) possibly_damaging(0.709) TCGA-G4-6628-01 1 230503870 230503870 A G PGBD5 Intron 0.27 TCGA-G4-6628-01 1 231047235 231047235 G A TTC13 Missense_Mutation p.P764S 0.28 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 1 231361217 231361217 C A C1orf131 Missense_Mutation p.R249M 0.23 deleterious(0) probably_damaging(0.971) TCGA-G4-6628-01 1 23208968 23208968 T C EPHB2 Missense_Mutation p.Y474H 0.32 tolerated(0.1) benign(0.012) TCGA-G4-6628-01 1 232172459 232172459 A G DISC1 Missense_Mutation p.Q816R 0.26 tolerated(0.1) benign(0.136) TCGA-G4-6628-01 1 232649826 232649826 G A SIPA1L2 Silent p.G420G 0.38 TCGA-G4-6628-01 1 232942210 232942211 - AA MAP10 Frame_Shift_Ins p.R484Sfs*3 0.21 TCGA-G4-6628-01 1 233482307 233482307 G A MLK4 Missense_Mutation p.A309T 0.25 deleterious(0) probably_damaging(0.984) TCGA-G4-6628-01 1 234367268 234367268 C T SLC35F3 Missense_Mutation p.A130V 0.31 tolerated(0.57) benign(0.002) TCGA-G4-6628-01 1 234743112 234743112 C A IRF2BP2 Missense_Mutation p.R512L 0.36 deleterious(0) probably_damaging(0.931) TCGA-G4-6628-01 1 235345366 235345366 C T ARID4B Silent p.P956P 0.27 TCGA-G4-6628-01 1 236195894 236195894 C T NID1 Silent p.Q448Q 0.24 TCGA-G4-6628-01 1 236212101 236212101 G A NID1 Silent p.V138V 0.40 TCGA-G4-6628-01 1 236306176 236306176 G A GPR137B Missense_Mutation p.C85Y 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 23637068 23637069 CA - HNRNPR Frame_Shift_Del p.W597Gfs*15 0.18 TCGA-G4-6628-01 1 237817710 237817710 A G RYR2 Missense_Mutation p.Q2654R 0.20 benign(0.003) TCGA-G4-6628-01 1 238048534 238048534 G A ZP4 Silent p.H414H 0.21 TCGA-G4-6628-01 1 240656344 240656344 G T GREM2 Missense_Mutation p.F144L 0.26 tolerated(0.37) benign(0.021) TCGA-G4-6628-01 1 24078986 24078986 C A TCEB3 Silent p.S531S 0.22 TCGA-G4-6628-01 1 242042125 242042125 T C EXO1 Missense_Mutation p.V530A 0.19 tolerated(0.26) benign(0.006) TCGA-G4-6628-01 1 2429964 2429964 G A PLCH2 Missense_Mutation p.V716M 0.24 tolerated(0.12) benign(0.063) TCGA-G4-6628-01 1 24406652 24406652 G A MYOM3 Missense_Mutation p.R814W 0.21 deleterious(0) probably_damaging(0.988) TCGA-G4-6628-01 1 2447002 2447002 C A PANK4 Missense_Mutation p.G458V 0.32 tolerated(0.07) possibly_damaging(0.871) TCGA-G4-6628-01 1 244751813 244751814 - A C1orf101 Frame_Shift_Ins p.F708Ifs*5 0.22 TCGA-G4-6628-01 1 245847603 245847603 C T KIF26B Missense_Mutation p.A776V 0.21 deleterious(0.01) unknown(0) TCGA-G4-6628-01 1 245861491 245861491 C T KIF26B Missense_Mutation p.R1970C 0.34 tolerated(0.26) unknown(0) TCGA-G4-6628-01 1 247654684 247654684 G - OR2W5 RNA 0.19 TCGA-G4-6628-01 1 247875810 247875810 G A OR6F1 Missense_Mutation p.A83V 0.28 tolerated(0.21) benign(0.126) TCGA-G4-6628-01 1 247902136 247902136 G A OR14K1 Missense_Mutation p.A74T 0.22 tolerated(0.33) benign(0.004) TCGA-G4-6628-01 1 248202093 248202094 - T OR2L2 Frame_Shift_Ins p.C178Lfs*2 0.21 TCGA-G4-6628-01 1 248367111 248367111 G A OR2M3 Missense_Mutation p.V248M 0.23 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 1 25233840 25233840 G A RUNX3 Missense_Mutation p.R219C 0.29 deleterious(0) probably_damaging(0.939) TCGA-G4-6628-01 1 26612324 26612324 G T UBXN11 Missense_Mutation p.P255H 0.34 tolerated(0.13) probably_damaging(0.994) TCGA-G4-6628-01 1 26663458 26663458 G A AIM1L Missense_Mutation p.P388L 0.25 deleterious(0) probably_damaging(0.964) TCGA-G4-6628-01 1 26691604 26691604 C - ZNF683 Frame_Shift_Del p.A145Pfs*93 0.21 TCGA-G4-6628-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.24 TCGA-G4-6628-01 1 27432286 27432286 G A SLC9A1 Intron 0.41 TCGA-G4-6628-01 1 28598899 28598899 C T SESN2 Silent p.P153P 0.18 TCGA-G4-6628-01 1 28600553 28600553 G A SESN2 Missense_Mutation p.D302N 0.36 tolerated(0.06) probably_damaging(0.953) TCGA-G4-6628-01 1 28891336 28891336 G T TRNAU1AP Missense_Mutation p.G134C 0.06 deleterious(0) probably_damaging(0.96) TCGA-G4-6628-01 1 31423057 31423057 C T PUM1 Missense_Mutation p.V925I 0.29 tolerated(0.06) benign(0.308) TCGA-G4-6628-01 1 31437656 31437657 TG - PUM1 Frame_Shift_Del p.H729Qfs*4 0.23 TCGA-G4-6628-01 1 31501679 31501679 A - PUM1 Frame_Shift_Del p.Q133Kfs*68 0.24 TCGA-G4-6628-01 1 31532195 31532195 G A PUM1 Silent p.G73G 0.33 TCGA-G4-6628-01 1 32126203 32126203 C T COL16A1 Missense_Mutation p.G1288S 0.33 unknown(0) TCGA-G4-6628-01 1 3322095 3322095 C T PRDM16 Missense_Mutation p.R357C 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 33778425 33778425 A G A3GALT2 Silent p.Y30Y 0.23 TCGA-G4-6628-01 1 34100853 34100853 G A CSMD2 Nonsense_Mutation p.Q1643* 0.15 TCGA-G4-6628-01 1 3422767 3422767 C T MEGF6 Missense_Mutation p.R608H 0.28 tolerated(0.17) benign(0.052) TCGA-G4-6628-01 1 35227845 35227845 G A GJB4 3'UTR 0.24 TCGA-G4-6628-01 1 3598917 3598917 C A TP73 5'UTR 0.28 TCGA-G4-6628-01 1 3648026 3648027 - T TP73 Frame_Shift_Ins p.L497Ffs*30 0.09 TCGA-G4-6628-01 1 36499829 36499829 A G AGO3 Missense_Mutation p.Q549R 0.31 tolerated(0.07) benign(0.226) TCGA-G4-6628-01 1 36557516 36557516 C A ADPRHL2 Silent p.A174A 0.30 TCGA-G4-6628-01 1 36636587 36636587 C - MAP7D1 Frame_Shift_Del p.P23Qfs*33 0.29 TCGA-G4-6628-01 1 3673395 3673395 G A CCDC27 Missense_Mutation p.A218T 0.16 tolerated(0.47) benign(0.084) TCGA-G4-6628-01 1 36748134 36748134 G A THRAP3 Intron 0.14 TCGA-G4-6628-01 1 36786004 36786004 C - SH3D21 Frame_Shift_Del p.H582Tfs*31 0.25 TCGA-G4-6628-01 1 37291209 37291209 G A GRIK3 Silent p.I583I 0.23 TCGA-G4-6628-01 1 38185581 38185581 G A EPHA10 Silent p.D854D 0.25 TCGA-G4-6628-01 1 38274779 38274779 C A C1orf122 3'UTR 0.22 TCGA-G4-6628-01 1 39895630 39895630 A G MACF1 Missense_Mutation p.T3612A 0.41 benign(0.279) TCGA-G4-6628-01 1 39904977 39904977 C A MACF1 Missense_Mutation p.F4025L 0.25 possibly_damaging(0.9) TCGA-G4-6628-01 1 41092376 41092376 C T RIMS3 Missense_Mutation p.R247H 0.59 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-G4-6628-01 1 43613605 43613605 G A FAM183A 5'Flank 0.40 TCGA-G4-6628-01 1 43675504 43675504 G T WDR65 Nonsense_Mutation p.G616* 0.30 TCGA-G4-6628-01 1 43748754 43748754 G A C1orf210 Missense_Mutation p.P15L 0.29 tolerated(0.43) benign(0.015) TCGA-G4-6628-01 1 44159775 44159775 T C KDM4A Splice_Site p.X828_splice 0.33 TCGA-G4-6628-01 1 46498270 46498270 C T MAST2 Silent p.H1139H 0.24 TCGA-G4-6628-01 1 47264934 47264934 G A CYP4B1 Splice_Site p.X60_splice 0.21 TCGA-G4-6628-01 1 51578137 51578137 T A C1orf185 Silent p.G6G 0.25 TCGA-G4-6628-01 1 52211215 52211215 A T OSBPL9 Missense_Mutation p.D132V 0.19 deleterious(0.02) benign(0.197) TCGA-G4-6628-01 1 53358695 53358695 C T ZYG11A 3'UTR 0.27 TCGA-G4-6628-01 1 53685982 53685982 T C C1orf123 Missense_Mutation p.N14S 0.40 deleterious(0.02) possibly_damaging(0.825) TCGA-G4-6628-01 1 53980428 53980428 G - GLIS1 Frame_Shift_Del p.H410Ifs*53 0.20 TCGA-G4-6628-01 1 55166019 55166019 G A MROH7 Missense_Mutation p.R997Q 0.20 tolerated(0.09) probably_damaging(0.998) TCGA-G4-6628-01 1 55452019 55452019 G A TMEM61 Missense_Mutation p.V89I 0.23 tolerated(0.71) benign(0.002) TCGA-G4-6628-01 1 57395145 57395145 T C C8B Missense_Mutation p.N570D 0.27 deleterious(0.01) probably_damaging(0.942) TCGA-G4-6628-01 1 5923361 5923361 G A NPHP4 Silent p.N1415N 0.27 TCGA-G4-6628-01 1 62738884 62738884 G A KANK4 Missense_Mutation p.P631L 0.32 tolerated(0.07) probably_damaging(0.913) TCGA-G4-6628-01 1 62740332 62740332 G T KANK4 Silent p.A148A 0.38 TCGA-G4-6628-01 1 63044558 63044558 A G DOCK7 Missense_Mutation p.Y651H 0.23 deleterious(0.02) possibly_damaging(0.495) TCGA-G4-6628-01 1 6314953 6314953 G A GPR153 Missense_Mutation p.R5W 0.30 deleterious(0.04) benign(0.027) TCGA-G4-6628-01 1 64017462 64017462 C T EFCAB7 Missense_Mutation p.A338V 0.21 tolerated(0.15) benign(0.003) TCGA-G4-6628-01 1 64707358 64707358 G A UBE2U Missense_Mutation p.G207R 0.29 tolerated(0.12) benign(0.06) TCGA-G4-6628-01 1 65330610 65330611 - T JAK1 Frame_Shift_Ins p.L346Tfs*4 0.20 TCGA-G4-6628-01 1 6605171 6605171 T - NOL9 Frame_Shift_Del p.R272Gfs*6 0.21 TCGA-G4-6628-01 1 67220451 67220451 G A TCTEX1D1 Missense_Mutation p.R37H 0.21 tolerated(0.14) benign(0.001) TCGA-G4-6628-01 1 67263874 67263874 T G INSL5 Missense_Mutation p.N77T 0.16 tolerated(1) benign(0.01) TCGA-G4-6628-01 1 67327829 67327830 - T WDR78 Frame_Shift_Ins p.N366Kfs*2 0.18 TCGA-G4-6628-01 1 71478162 71478162 C A PTGER3 Missense_Mutation p.M301I 0.26 tolerated(0.17) benign(0.06) TCGA-G4-6628-01 1 7870603 7870603 A C PER3 Missense_Mutation p.T492P 0.29 deleterious(0.03) benign(0.009) TCGA-G4-6628-01 1 79403648 79403648 C T ELTD1 Missense_Mutation p.V202I 0.28 tolerated(0.06) benign(0.118) TCGA-G4-6628-01 1 8419842 8419842 G A RERE Silent p.R1200R 0.27 TCGA-G4-6628-01 1 84335594 84335594 A - TTLL7 3'UTR 0.19 TCGA-G4-6628-01 1 84356055 84356055 C T TTLL7 Missense_Mutation p.R773H 0.35 deleterious(0.01) benign(0.107) TCGA-G4-6628-01 1 84543895 84543895 C T RP11-486G15.2 5'Flank 0.23 TCGA-G4-6628-01 1 84880385 84880385 A G DNASE2B Missense_Mutation p.K307R 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 1 84981938 84981939 - A SPATA1 RNA 0.34 TCGA-G4-6628-01 1 85018835 85018835 A - CTBS 3'UTR 0.16 TCGA-G4-6628-01 1 85510878 85510878 G A MCOLN3 Nonsense_Mutation p.R56* 0.40 TCGA-G4-6628-01 1 85655977 85655977 C T SYDE2 Missense_Mutation p.V402I 0.23 tolerated(0.15) benign(0.004) TCGA-G4-6628-01 1 87185263 87185263 T G SH3GLB1 Silent p.L96L 0.26 TCGA-G4-6628-01 1 883563 883563 C T NOC2L Missense_Mutation p.S536N 0.18 tolerated(0.37) benign(0.142) TCGA-G4-6628-01 1 89850880 89850881 - A GBP6 Frame_Shift_Ins p.N587Kfs*2 0.23 TCGA-G4-6628-01 1 90179738 90179738 T C LRRC8C Missense_Mutation p.S537P 0.39 deleterious(0.03) possibly_damaging(0.723) TCGA-G4-6628-01 1 91182577 91182577 C T BARHL2 Missense_Mutation p.G59E 0.40 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-G4-6628-01 1 92193229 92193229 C T TGFBR3 Missense_Mutation p.S291N 0.25 tolerated(0.89) benign(0.001) TCGA-G4-6628-01 1 92642631 92642631 A - KIAA1107 Frame_Shift_Del p.N191Mfs*9 0.21 TCGA-G4-6628-01 1 9427574 9427574 G - SPSB1 Frame_Shift_Del p.E256Rfs*53 0.31 TCGA-G4-6628-01 1 94497528 94497528 G A ABCA4 Nonsense_Mutation p.Q1312* 0.26 TCGA-G4-6628-01 20 10622285 10622285 G A JAG1 Silent p.S913S 0.19 TCGA-G4-6628-01 20 1108090 1108090 G A PSMF1 Missense_Mutation p.A102T 0.24 tolerated(0.21) benign(0.005) TCGA-G4-6628-01 20 1352785 1352785 A G FKBP1A Missense_Mutation p.F100L 0.20 deleterious(0) probably_damaging(0.976) TCGA-G4-6628-01 20 1532360 1532360 C T SIRPD Missense_Mutation p.R133Q 0.16 tolerated(0.47) benign(0.008) TCGA-G4-6628-01 20 16347755 16347756 - A KIF16B 3'UTR 0.29 TCGA-G4-6628-01 20 17597383 17597383 G A RRBP1 Silent p.P854P 0.25 TCGA-G4-6628-01 20 17601423 17601423 G A RRBP1 Silent p.S715S 0.40 TCGA-G4-6628-01 20 17640191 17640191 T - RRBP1 Intron 0.09 TCGA-G4-6628-01 20 18005451 18005451 G A OVOL2 Silent p.C219C 0.17 TCGA-G4-6628-01 20 1896039 1896039 G A SIRPA Missense_Mutation p.R125Q 0.24 tolerated(0.97) benign(0.006) TCGA-G4-6628-01 20 19662551 19662551 G A SLC24A3 Missense_Mutation p.G273R 0.18 tolerated(0.12) benign(0.003) TCGA-G4-6628-01 20 210074 210074 C T DEFB129 Missense_Mutation p.P72S 0.31 tolerated(0.71) benign(0.004) TCGA-G4-6628-01 20 21311306 21311306 A T XRN2 Missense_Mutation p.D180V 0.33 tolerated(0.07) probably_damaging(0.93) TCGA-G4-6628-01 20 23016973 23016973 G A SSTR4 Missense_Mutation p.V285M 0.20 deleterious(0.04) benign(0.072) TCGA-G4-6628-01 20 23804676 23804676 G T CST2 Missense_Mutation p.S136Y 0.12 tolerated(0.29) benign(0.085) TCGA-G4-6628-01 20 23805880 23805880 G T CST2 Silent p.T103T 0.15 TCGA-G4-6628-01 20 2384312 2384312 G A TGM6 Silent p.A393A 0.45 TCGA-G4-6628-01 20 2539196 2539196 C T TMC2 Silent p.R59R 0.26 TCGA-G4-6628-01 20 2582831 2582831 G A TMC2 Missense_Mutation p.A433T 0.19 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 20 26084237 26084237 T C NCOR1P1 RNA 0.18 TCGA-G4-6628-01 20 3008359 3008359 C T PTPRA Missense_Mutation p.R598W 0.33 deleterious(0) probably_damaging(0.982) TCGA-G4-6628-01 20 30433179 30433179 C T FOXS1 Missense_Mutation p.R56H 0.11 tolerated(0.14) probably_damaging(0.998) TCGA-G4-6628-01 20 31017757 31017757 A G ASXL1 Missense_Mutation p.S207G 0.21 deleterious(0.05) benign(0.011) TCGA-G4-6628-01 20 31575557 31575557 G A SUN5 Missense_Mutation p.T213M 0.23 deleterious(0) probably_damaging(0.939) TCGA-G4-6628-01 20 31996332 31996332 C T SNTA1 Missense_Mutation p.R500H 0.36 deleterious(0) probably_damaging(0.988) TCGA-G4-6628-01 20 33095508 33095508 G A ITCH Missense_Mutation p.R874H 0.38 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 20 33345235 33345235 G A NCOA6 Missense_Mutation p.S439F 0.37 possibly_damaging(0.828) TCGA-G4-6628-01 20 33657114 33657114 C T TRPC4AP Silent p.L133L 0.09 TCGA-G4-6628-01 20 35422298 35422298 C T SOGA1 Missense_Mutation p.R1396H 0.17 tolerated(0.08) probably_damaging(0.993) TCGA-G4-6628-01 20 42143263 42143263 C G L3MBTL1 Intron 0.29 TCGA-G4-6628-01 20 4229167 4229167 G A ADRA1D Silent p.S146S 0.26 TCGA-G4-6628-01 20 42574566 42574566 G A TOX2 Intron 0.21 TCGA-G4-6628-01 20 428611 428611 G T TBC1D20 Missense_Mutation p.L60I 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-G4-6628-01 20 42907998 42907998 G A GDAP1L1 3'UTR 0.36 TCGA-G4-6628-01 20 43561750 43561750 C - PABPC1L Frame_Shift_Del p.P458Rfs*24 0.20 TCGA-G4-6628-01 20 43738615 43738615 A G WFDC5 3'UTR 0.32 TCGA-G4-6628-01 20 43804650 43804650 C T PI3 Silent p.C76C 0.27 TCGA-G4-6628-01 20 44404240 44404240 C T WFDC3 Silent p.G165G 0.28 TCGA-G4-6628-01 20 44574942 44574942 G A PCIF1 Missense_Mutation p.C511Y 0.19 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 20 44980771 44980771 G A SLC35C2 Silent p.L252L 0.22 TCGA-G4-6628-01 20 45130066 45130066 G A ZNF334 Missense_Mutation p.R638C 0.31 tolerated(0.22) benign(0.011) TCGA-G4-6628-01 20 45607252 45607252 T A EYA2 Intron 0.20 TCGA-G4-6628-01 20 4705810 4705810 G A PRND 3'UTR 0.35 TCGA-G4-6628-01 20 4707131 4707131 G A PRND 3'UTR 0.20 TCGA-G4-6628-01 20 47266692 47266693 - G PREX1 Frame_Shift_Ins p.L957Pfs*50 0.14 TCGA-G4-6628-01 20 47585729 47585729 G A ARFGEF2 Missense_Mutation p.V369I 0.23 tolerated(1) benign(0.012) TCGA-G4-6628-01 20 47852716 47852716 T C DDX27 Missense_Mutation p.L517P 0.41 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 20 47990488 47990488 C T KCNB1 Missense_Mutation p.A537T 0.09 tolerated_low_confidence(1) benign(0.036) TCGA-G4-6628-01 20 48098824 48098824 G A KCNB1 Missense_Mutation p.T65M 0.24 deleterious(0) probably_damaging(0.984) TCGA-G4-6628-01 20 49575973 49575973 G C MOCS3 Silent p.R198R 0.31 TCGA-G4-6628-01 20 50408011 50408011 C A SALL4 Missense_Mutation p.Q337H 0.25 tolerated(0.1) possibly_damaging(0.625) TCGA-G4-6628-01 20 50769441 50769441 G A ZFP64 Silent p.C430C 0.31 TCGA-G4-6628-01 20 5170424 5170424 G A CDS2 Missense_Mutation p.R382H 0.20 deleterious(0) probably_damaging(0.993) TCGA-G4-6628-01 20 52645426 52645426 G A BCAS1 Silent p.N76N 0.34 TCGA-G4-6628-01 20 52789979 52789979 G A CYP24A1 Missense_Mutation p.T47I 0.40 tolerated(0.44) benign(0.017) TCGA-G4-6628-01 20 55027855 55027855 T A CASS4 Missense_Mutation p.N541K 0.19 tolerated(0.3) benign(0.012) TCGA-G4-6628-01 20 55206311 55206311 C A TFAP2C Silent p.S33S 0.28 TCGA-G4-6628-01 20 56735791 56735791 C T C20orf85 Silent p.N109N 0.26 TCGA-G4-6628-01 20 57415024 57415024 G T RP4-806M20.3 5'Flank 0.38 TCGA-G4-6628-01 20 57428366 57428366 C T GNAS Missense_Mutation p.R16C 0.21 tolerated_low_confidence(0.1) unknown(0) TCGA-G4-6628-01 20 57572716 57572716 C T CTSZ Missense_Mutation p.G194S 0.18 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 20 57767357 57767357 G A ZNF831 Missense_Mutation p.R428Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 20 60774277 60774277 G A MTG2 Missense_Mutation p.G264R 0.50 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 20 60905609 60905609 C T LAMA5 Missense_Mutation p.G1305D 0.31 possibly_damaging(0.84) TCGA-G4-6628-01 20 60922066 60922066 C T LAMA5 Silent p.Q325Q 0.26 TCGA-G4-6628-01 20 61513681 61513681 G A DIDO1 Silent p.D1209D 0.27 TCGA-G4-6628-01 20 61594027 61594027 G A SLC17A9 Nonsense_Mutation p.W183* 0.19 TCGA-G4-6628-01 20 61834828 61834828 G - YTHDF1 Frame_Shift_Del p.P155Rfs*26 0.22 TCGA-G4-6628-01 20 62191604 62191604 G A HELZ2 Missense_Mutation p.A2526V 0.35 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 20 62340150 62340150 G A ZGPAT Missense_Mutation p.R73H 0.20 tolerated(0.13) benign(0.002) TCGA-G4-6628-01 20 62407140 62407140 G A ZBTB46 Silent p.R371R 0.28 TCGA-G4-6628-01 20 62493529 62493529 C T ABHD16B Silent p.G212G 0.12 TCGA-G4-6628-01 20 62591291 62591291 G A ZNF512B Missense_Mutation p.R877W 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.77) TCGA-G4-6628-01 20 7963045 7963045 G T TMX4 Silent p.P301P 0.22 TCGA-G4-6628-01 20 825700 825700 G A FAM110A Missense_Mutation p.V85M 0.44 tolerated(0.38) possibly_damaging(0.845) TCGA-G4-6628-01 20 948762 948762 G A RSPO4 Silent p.G33G 0.33 TCGA-G4-6628-01 21 11039071 11039071 A T BAGE2 RNA 0.04 TCGA-G4-6628-01 21 17911455 17911455 G A MIR99A RNA 0.24 TCGA-G4-6628-01 21 22910187 22910187 A C NCAM2 Missense_Mutation p.E808A 0.17 tolerated(0.05) probably_damaging(0.995) TCGA-G4-6628-01 21 28338354 28338354 C T ADAMTS5 Silent p.G119G 0.34 TCGA-G4-6628-01 21 30426572 30426572 A - USP16 3'UTR 0.38 TCGA-G4-6628-01 21 30934054 30934054 C T GRIK1 Silent p.A749A 0.30 TCGA-G4-6628-01 21 31587854 31587854 G A CLDN8 Silent p.G130G 0.42 TCGA-G4-6628-01 21 31692604 31692604 C T KRTAP26-1 5'UTR 0.24 TCGA-G4-6628-01 21 31744493 31744493 G A KRTAP13-2 Silent p.R13R 0.24 TCGA-G4-6628-01 21 32638630 32638630 G A TIAM1 Missense_Mutation p.P220L 0.20 deleterious_low_confidence(0.01) benign(0.017) TCGA-G4-6628-01 21 33756626 33756626 A G URB1 Missense_Mutation p.Y144H 0.23 tolerated(0.84) benign(0.253) TCGA-G4-6628-01 21 34003891 34003891 A T SYNJ1 Missense_Mutation p.I1418N 0.22 deleterious_low_confidence(0.01) benign(0.24) TCGA-G4-6628-01 21 34443961 34443961 C T OLIG1 3'UTR 0.20 TCGA-G4-6628-01 21 34954536 34954536 C T DONSON Silent p.L327L 0.16 TCGA-G4-6628-01 21 35742877 35742878 - AA KCNE2 Frame_Shift_Ins p.E35Kfs*22 0.16 TCGA-G4-6628-01 21 36206818 36206818 G A RUNX1 Missense_Mutation p.R232W 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6628-01 21 37602870 37602870 G A DOPEY2 Silent p.S596S 0.26 TCGA-G4-6628-01 21 39755570 39755570 G T ERG Missense_Mutation p.L406I 0.20 tolerated(0.18) benign(0.08) TCGA-G4-6628-01 21 40569293 40569294 - T BRWD1 Frame_Shift_Ins p.R1901Kfs*6 0.24 TCGA-G4-6628-01 21 40763704 40763704 G A WRB Missense_Mutation p.R93Q 0.26 deleterious(0.03) possibly_damaging(0.786) TCGA-G4-6628-01 21 42812836 42812836 A G MX1 Missense_Mutation p.Y205C 0.31 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 21 42845365 42845365 C T TMPRSS2 Silent p.A299A 0.29 TCGA-G4-6628-01 21 44323383 44323383 G A NDUFV3 Silent p.P87P 0.22 TCGA-G4-6628-01 21 44450175 44450175 C T PKNOX1 Silent p.S425S 0.21 TCGA-G4-6628-01 21 44841548 44841548 G A SIK1 Silent p.L157L 0.35 TCGA-G4-6628-01 21 45108102 45108102 C T RRP1B Missense_Mutation p.A616V 0.23 tolerated(0.91) benign(0.004) TCGA-G4-6628-01 21 45502741 45502741 T C TRAPPC10 Missense_Mutation p.V599A 0.27 tolerated(0.19) benign(0.007) TCGA-G4-6628-01 21 45565424 45565424 C T C21orf33 3'UTR 0.23 TCGA-G4-6628-01 21 45738451 45738451 G A PFKL Silent p.R345R 0.30 TCGA-G4-6628-01 21 45746791 45746791 G A PFKL 3'UTR 0.30 TCGA-G4-6628-01 21 45878591 45878591 T - LRRC3 3'UTR 0.18 TCGA-G4-6628-01 21 46276121 46276121 G A PTTG1IP Missense_Mutation p.R146W 0.15 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 21 46912455 46912455 G A COL18A1 Missense_Mutation p.V902I 0.16 benign(0.138) TCGA-G4-6628-01 21 46924329 46924329 G - COL18A1 Splice_Site p.X1091_splice 0.26 TCGA-G4-6628-01 21 46951638 46951638 C T SLC19A1 Missense_Mutation p.R205H 0.38 tolerated(0.07) benign(0.329) TCGA-G4-6628-01 21 47423907 47423907 A C COL6A1 Silent p.R1023R 0.30 TCGA-G4-6628-01 21 47693424 47693424 G A MCM3AP Missense_Mutation p.R692W 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 21 47801752 47801752 G A PCNT Silent p.Q1103Q 0.15 TCGA-G4-6628-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.35 TCGA-G4-6628-01 22 18383723 18383723 G T MICAL3 Silent p.A244A 0.27 TCGA-G4-6628-01 22 19121926 19121926 G A DGCR14 Missense_Mutation p.T405M 0.27 deleterious(0.01) probably_damaging(0.965) TCGA-G4-6628-01 22 19711090 19711090 G A GP1BB 5'UTR 0.21 TCGA-G4-6628-01 22 19839750 19839750 C T C22orf29 Missense_Mutation p.R12H 0.38 tolerated_low_confidence(0.22) possibly_damaging(0.614) TCGA-G4-6628-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.27 TCGA-G4-6628-01 22 20759866 20759866 C T ZNF74 Silent p.L181L 0.28 TCGA-G4-6628-01 22 20784814 20784814 G A SCARF2 Silent p.Y368Y 0.34 TCGA-G4-6628-01 22 21272358 21272358 G T CRKL Missense_Mutation p.G46W 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 22 21800492 21800492 C A HIC2 Silent p.S436S 0.43 TCGA-G4-6628-01 22 21988450 21988450 G A CCDC116 Missense_Mutation p.G71D 0.20 deleterious(0.01) possibly_damaging(0.628) TCGA-G4-6628-01 22 22385648 22385648 G A IGLV4-69 Missense_Mutation p.S46N 0.19 deleterious(0.03) benign(0.324) TCGA-G4-6628-01 22 22937303 22937303 C T IGLV3-32 Nonsense_Mutation p.Q41* 0.17 TCGA-G4-6628-01 22 23214185 23214185 C T IGLV4-3 Silent p.S114S 0.13 TCGA-G4-6628-01 22 23438055 23438055 G A GNAZ Missense_Mutation p.S58N 0.35 tolerated(0.12) possibly_damaging(0.507) TCGA-G4-6628-01 22 24494044 24494044 T C CABIN1 Missense_Mutation p.S1336P 0.22 tolerated(0.09) benign(0.004) TCGA-G4-6628-01 22 25603049 25603049 G A CRYBB3 Missense_Mutation p.R169H 0.19 tolerated(0.22) benign(0.064) TCGA-G4-6628-01 22 26692998 26692998 C T SEZ6L Missense_Mutation p.R372W 0.21 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 22 26897990 26897990 C A TFIP11 Missense_Mutation p.R226M 0.22 deleterious(0) possibly_damaging(0.681) TCGA-G4-6628-01 22 27003862 27003862 G A CRYBB1 Silent p.P141P 0.17 TCGA-G4-6628-01 22 28490087 28490087 C - TTC28 Frame_Shift_Del p.V1305Wfs*29 0.28 TCGA-G4-6628-01 22 28492361 28492361 C A TTC28 Nonsense_Mutation p.G1195* 0.30 TCGA-G4-6628-01 22 28494921 28494921 G A TTC28 Missense_Mutation p.R1177W 0.28 deleterious(0) probably_damaging(0.932) TCGA-G4-6628-01 22 30212010 30212010 C T ASCC2 Silent p.L198L 0.30 TCGA-G4-6628-01 22 31337448 31337448 T G MORC2 Silent p.R204R 0.26 TCGA-G4-6628-01 22 31487678 31487678 C T SMTN Missense_Mutation p.R493W 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 22 32828425 32828425 C T BPIFC Missense_Mutation p.A362T 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-G4-6628-01 22 35661587 35661587 A G HMGXB4 Silent p.R402R 0.45 TCGA-G4-6628-01 22 36680309 36680309 G A MYH9 Silent p.A1865A 0.30 TCGA-G4-6628-01 22 36684899 36684899 C T MYH9 Silent p.L1548L 0.33 TCGA-G4-6628-01 22 36718473 36718473 C T MYH9 Splice_Site p.X235_splice 0.22 TCGA-G4-6628-01 22 37905060 37905060 C T CARD10 Intron 0.40 TCGA-G4-6628-01 22 38202199 38202200 - T H1F0 3'UTR 0.17 TCGA-G4-6628-01 22 38221187 38221187 C T GALR3 Missense_Mutation p.R273C 0.24 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 22 38461095 38461096 - A PICK1 Frame_Shift_Ins p.T82Nfs*2 0.22 TCGA-G4-6628-01 22 38493107 38493107 G A BAIAP2L2 Missense_Mutation p.R182W 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 22 40719077 40719077 C T TNRC6B Silent p.S1778S 0.25 TCGA-G4-6628-01 22 40804954 40804954 C T SGSM3 Silent p.N640N 0.24 TCGA-G4-6628-01 22 41257688 41257688 C A DNAJB7 Missense_Mutation p.R104M 0.22 tolerated(0.06) possibly_damaging(0.635) TCGA-G4-6628-01 22 41547864 41547864 G T EP300 Nonsense_Mutation p.G949* 0.28 TCGA-G4-6628-01 22 41573577 41573577 C T EP300 Silent p.H1954H 0.27 TCGA-G4-6628-01 22 41652046 41652046 G A RANGAP1 Missense_Mutation p.A351V 0.30 tolerated(0.12) benign(0.013) TCGA-G4-6628-01 22 41919277 41919277 G A ACO2 Nonsense_Mutation p.W455* 0.20 TCGA-G4-6628-01 22 42377792 42377792 C T SEPT3 Missense_Mutation p.R52C 0.11 deleterious(0) possibly_damaging(0.548) TCGA-G4-6628-01 22 42522621 42522621 G A CYP2D6 Silent p.F483F 0.27 TCGA-G4-6628-01 22 42525175 42525175 G A CYP2D6 Missense_Mutation p.A122V 0.29 deleterious(0) benign(0.194) TCGA-G4-6628-01 22 43564847 43564847 G A TTLL12 Silent p.C572C 0.29 TCGA-G4-6628-01 22 44287049 44287050 - G PNPLA5 Frame_Shift_Ins p.D107Rfs*19 0.16 TCGA-G4-6628-01 22 45728572 45728572 C A FAM118A Silent p.I306I 0.18 TCGA-G4-6628-01 22 45919012 45919012 C T FBLN1 Intron 0.22 TCGA-G4-6628-01 22 45959004 45959004 C A FBLN1 Intron 0.26 TCGA-G4-6628-01 22 46657627 46657628 - A PKDREJ Frame_Shift_Ins p.L531Ffs*4 0.16 TCGA-G4-6628-01 22 46658359 46658359 G A PKDREJ Silent p.S287S 0.32 TCGA-G4-6628-01 22 46768869 46768869 T C CELSR1 Missense_Mutation p.Y2557C 0.21 deleterious(0) probably_damaging(0.992) TCGA-G4-6628-01 22 46931761 46931761 G A CELSR1 Missense_Mutation p.P436L 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 22 48885442 48885442 C T FAM19A5 Missense_Mutation p.A13V 0.27 tolerated_low_confidence(0.15) possibly_damaging(0.75) TCGA-G4-6628-01 22 50728405 50728405 G A PLXNB2 Silent p.H203H 0.30 TCGA-G4-6628-01 22 51009646 51009646 G A CPT1B Missense_Mutation p.R606C 0.32 deleterious(0) probably_damaging(0.984) TCGA-G4-6628-01 22 51010463 51010463 G A CPT1B Missense_Mutation p.T516I 0.32 tolerated(0.29) benign(0.024) TCGA-G4-6628-01 2 101179483 101179483 G - PDCL3 5'UTR 0.28 TCGA-G4-6628-01 2 103013185 103013185 C T IL18R1 Silent p.L489L 0.15 TCGA-G4-6628-01 2 105858861 105858861 C T GPR45 Silent p.C182C 0.26 TCGA-G4-6628-01 2 105886067 105886067 G A TGFBRAP1 Silent p.L690L 0.13 TCGA-G4-6628-01 2 105924661 105924661 C T TGFBRAP1 Missense_Mutation p.C33Y 0.19 deleterious(0) benign(0.086) TCGA-G4-6628-01 2 106471562 106471562 G A NCK2 Missense_Mutation p.A15T 0.13 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 2 109116074 109116074 G T GCC2 Silent p.L1616L 0.19 TCGA-G4-6628-01 2 10918699 10918699 G C ATP6V1C2 Missense_Mutation p.G322A 0.16 tolerated(0.1) benign(0.122) TCGA-G4-6628-01 2 109368357 109368357 A G RANBP2 Silent p.L554L 0.24 TCGA-G4-6628-01 2 109384188 109384188 C T RANBP2 Missense_Mutation p.T2398I 0.16 deleterious(0) possibly_damaging(0.864) TCGA-G4-6628-01 2 110015235 110015235 C T SH3RF3 Missense_Mutation p.R379C 0.28 deleterious(0.02) probably_damaging(0.918) TCGA-G4-6628-01 2 110373605 110373605 G A SOWAHC Silent p.S513S 0.29 TCGA-G4-6628-01 2 110375236 110375236 A - SOWAHC 3'UTR 0.19 TCGA-G4-6628-01 2 112615917 112615917 G T ANAPC1 Missense_Mutation p.L442M 0.15 deleterious(0.01) possibly_damaging(0.809) TCGA-G4-6628-01 2 113067706 113067707 - A ZC3H6 Frame_Shift_Ins p.Q197Tfs*11 0.19 TCGA-G4-6628-01 2 113332548 113332548 G A POLR1B Missense_Mutation p.A884T 0.23 deleterious(0) probably_damaging(0.984) TCGA-G4-6628-01 2 113977723 113977723 T C PAX8 Missense_Mutation p.T408A 0.37 tolerated(0.06) benign(0.016) TCGA-G4-6628-01 2 114386274 114386274 G A RABL2A Missense_Mutation p.A31T 0.13 tolerated(0.05) probably_damaging(0.954) TCGA-G4-6628-01 2 11587883 11587883 G A E2F6 Silent p.H223H 0.26 TCGA-G4-6628-01 2 116593756 116593756 A G DPP10 Silent p.S662S 0.15 TCGA-G4-6628-01 2 11720942 11720942 G A GREB1 Silent p.P295P 0.43 TCGA-G4-6628-01 2 11752474 11752474 T C GREB1 Intron 0.17 TCGA-G4-6628-01 2 118864714 118864715 - T INSIG2 Frame_Shift_Ins p.A198Cfs*19 0.15 TCGA-G4-6628-01 2 119600821 119600821 G A EN1 Missense_Mutation p.T291I 0.24 deleterious(0.03) benign(0.118) TCGA-G4-6628-01 2 119915609 119915609 G A C1QL2 Silent p.G79G 0.19 TCGA-G4-6628-01 2 120684181 120684181 A C PTPN4 Missense_Mutation p.T337P 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-G4-6628-01 2 120684186 120684186 A G PTPN4 Silent p.E338E 0.12 TCGA-G4-6628-01 2 121746888 121746888 C T GLI2 Missense_Mutation p.A1133V 0.40 tolerated(0.1) benign(0.057) TCGA-G4-6628-01 2 122106126 122106126 G A CLASP1 Silent p.L1459L 0.16 TCGA-G4-6628-01 2 122204922 122204922 C T CLASP1 Missense_Mutation p.A635T 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-G4-6628-01 2 125660527 125660527 G A CNTNAP5 Missense_Mutation p.V1168I 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6628-01 2 128341823 128341823 C T MYO7B Silent p.T490T 0.39 TCGA-G4-6628-01 2 128388811 128388811 C T MYO7B Silent p.A1630A 0.24 TCGA-G4-6628-01 2 128757976 128757976 G A SAP130 Missense_Mutation p.R334C 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G4-6628-01 2 130910146 130910146 C - SMPD4 Frame_Shift_Del p.K862Sfs*138 0.13 TCGA-G4-6628-01 2 130949665 130949665 G A TUBA3E Silent p.P364P 0.22 TCGA-G4-6628-01 2 131521424 131521424 C T AMER3 Silent p.G593G 0.17 TCGA-G4-6628-01 2 131522572 131522572 G A AMER3 3'UTR 0.17 TCGA-G4-6628-01 2 132276080 132276080 G T AC093838.4 RNA 0.16 TCGA-G4-6628-01 2 136537922 136537948 CAAACCCTGCATCATCTAGCAAATCAG AAACCCTGCATCATCTAGCAAATCAGA UBXN4 Missense_Mutation p.PNPASSSKSE452QTLHHLANQK 0.12 TCGA-G4-6628-01 2 136562577 136562577 C T LCT Silent p.T1408T 0.41 TCGA-G4-6628-01 2 141072520 141072520 G A LRP1B Silent p.C4263C 0.20 TCGA-G4-6628-01 2 141130651 141130651 C T LRP1B Missense_Mutation p.C3565Y 0.15 possibly_damaging(0.712) TCGA-G4-6628-01 2 145147231 145147231 G A ZEB2 Silent p.G1144G 0.33 TCGA-G4-6628-01 2 145161637 145161637 C T ZEB2 Missense_Mutation p.R218Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 2 148683686 148683687 AA - ACVR2A Frame_Shift_Del p.K437Efs*19 0.11 TCGA-G4-6628-01 2 148712949 148712949 T G ORC4 Missense_Mutation p.N135H 0.18 deleterious(0) probably_damaging(0.953) TCGA-G4-6628-01 2 149226927 149226927 T C MBD5 Missense_Mutation p.F472S 0.16 deleterious(0) possibly_damaging(0.504) TCGA-G4-6628-01 2 152320681 152320681 T C RIF1 Silent p.I1549I 0.27 TCGA-G4-6628-01 2 152325186 152325186 G A RIF1 Missense_Mutation p.C2286Y 0.21 tolerated(0.09) benign(0.004) TCGA-G4-6628-01 2 152490194 152490194 G A NEB Missense_Mutation p.R3130W 0.67 probably_damaging(0.989) TCGA-G4-6628-01 2 152529149 152529149 C T NEB Missense_Mutation p.G1345S 0.15 probably_damaging(1) TCGA-G4-6628-01 2 153417547 153417547 G T FMNL2 Silent p.L198L 0.33 TCGA-G4-6628-01 2 158636938 158636938 C T ACVR1 Missense_Mutation p.C81Y 0.18 deleterious(0.02) probably_damaging(0.985) TCGA-G4-6628-01 2 160697258 160697258 G A LY75-CD302 Silent p.I1163I 0.14 TCGA-G4-6628-01 2 160698866 160698866 C T LY75-CD302 Missense_Mutation p.R1057H 0.30 tolerated(0.63) benign(0.001) TCGA-G4-6628-01 2 160746724 160746724 C T LY75-CD302 Missense_Mutation p.E268K 0.14 tolerated(0.23) probably_damaging(0.953) TCGA-G4-6628-01 2 160798437 160798437 G A PLA2R1 Missense_Mutation p.T1415I 0.23 tolerated(1) benign(0.004) TCGA-G4-6628-01 2 162481061 162481061 G A SLC4A10 Silent p.E11E 0.14 TCGA-G4-6628-01 2 164466779 164466779 G A FIGN Silent p.S521S 0.24 TCGA-G4-6628-01 2 164466809 164466809 C T FIGN Silent p.A511A 0.39 TCGA-G4-6628-01 2 1652526 1652526 C T PXDN Nonsense_Mutation p.W1009* 0.50 TCGA-G4-6628-01 2 166170444 166170445 - T SCN2A Frame_Shift_Ins p.V406Cfs*24 0.21 TCGA-G4-6628-01 2 166514308 166514308 A G CSRNP3 Silent p.T62T 0.15 TCGA-G4-6628-01 2 166892609 166892610 - T SCN1A Frame_Shift_Ins p.N1126Kfs*8 0.14 TCGA-G4-6628-01 2 1670017 1670017 G A PXDN Silent p.S420S 0.17 TCGA-G4-6628-01 2 167133597 167133597 G A SCN9A Silent p.L913L 0.22 TCGA-G4-6628-01 2 167160601 167160601 C T SCN9A Intron 0.19 TCGA-G4-6628-01 2 168102339 168102339 G T XIRP2 Missense_Mutation p.Q1479H 0.20 probably_damaging(0.914) TCGA-G4-6628-01 2 1684046 1684046 G A PXDN Nonsense_Mutation p.Q217* 0.23 TCGA-G4-6628-01 2 169783756 169783756 A G ABCB11 Silent p.Y1176Y 0.19 TCGA-G4-6628-01 2 170032934 170032934 C T LRP2 Missense_Mutation p.A3520T 0.24 benign(0.327) TCGA-G4-6628-01 2 170068660 170068660 C T LRP2 Missense_Mutation p.C2033Y 0.18 probably_damaging(0.999) TCGA-G4-6628-01 2 171570596 171570596 C T LINC01124 Missense_Mutation p.A120T 0.18 unknown(0) TCGA-G4-6628-01 2 171702522 171702522 G A GAD1 Silent p.G317G 0.40 TCGA-G4-6628-01 2 171716238 171716238 C G GAD1 Missense_Mutation p.A544G 0.11 tolerated(0.25) probably_damaging(0.984) TCGA-G4-6628-01 2 171822497 171822497 G A GORASP2 Missense_Mutation p.A406T 0.23 tolerated_low_confidence(0.34) benign(0.226) TCGA-G4-6628-01 2 171822527 171822527 C - GORASP2 Frame_Shift_Del p.T418Lfs*74 0.13 TCGA-G4-6628-01 2 173352858 173352858 G A ITGA6 Missense_Mutation p.A803T 0.16 deleterious(0.03) possibly_damaging(0.814) TCGA-G4-6628-01 2 174229545 174229545 G A CDCA7 Missense_Mutation p.R241H 0.34 tolerated(0.1) possibly_damaging(0.537) TCGA-G4-6628-01 2 17697423 17697423 A - RAD51AP2 Frame_Shift_Del p.Y754Mfs*3 0.13 TCGA-G4-6628-01 2 177053983 177053983 G A HOXD1 Missense_Mutation p.V152M 0.17 tolerated(0.08) possibly_damaging(0.564) TCGA-G4-6628-01 2 179397705 179397705 C T TTN Missense_Mutation p.R34546H 0.40 TCGA-G4-6628-01 2 179415795 179415795 G T TTN Missense_Mutation p.P30488H 0.15 TCGA-G4-6628-01 2 179429982 179429982 G A TTN Silent p.G26959G 0.16 TCGA-G4-6628-01 2 179430106 179430106 T C TTN Missense_Mutation p.E26918G 0.20 TCGA-G4-6628-01 2 179440693 179440693 G A TTN Missense_Mutation p.A23389V 0.21 TCGA-G4-6628-01 2 179453974 179453974 T C TTN Silent p.S20826S 0.15 TCGA-G4-6628-01 2 179462439 179462439 C T TTN Missense_Mutation p.V19124I 0.21 TCGA-G4-6628-01 2 179574432 179574432 A G TTN Silent p.S9538S 0.23 TCGA-G4-6628-01 2 179579171 179579171 A G TTN Missense_Mutation p.V8777A 0.28 TCGA-G4-6628-01 2 179615894 179615894 T C TTN Intron 0.17 TCGA-G4-6628-01 2 179714883 179714883 C T CCDC141 Missense_Mutation p.E1084K 0.45 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 2 17998238 17998238 G A MSGN1 Silent p.L151L 0.31 TCGA-G4-6628-01 2 179997154 179997154 C A SESTD1 Splice_Site p.X284_splice 0.14 TCGA-G4-6628-01 2 18112796 18112796 G T KCNS3 Missense_Mutation p.R174I 0.41 tolerated(0.35) benign(0.091) TCGA-G4-6628-01 2 182402708 182402708 A G CERKL 3'Flank 0.47 TCGA-G4-6628-01 2 182409427 182409427 C A CERKL Missense_Mutation p.Q481H 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-G4-6628-01 2 183593687 183593687 G A DNAJC10 Missense_Mutation p.S200N 0.22 deleterious(0.01) possibly_damaging(0.859) TCGA-G4-6628-01 2 186673251 186673251 A C FSIP2 Missense_Mutation p.E6495D 0.25 possibly_damaging(0.699) TCGA-G4-6628-01 2 18737001 18737001 C A RDH14 Missense_Mutation p.G156V 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 2 187465033 187465033 C A ITGAV Intron 0.16 TCGA-G4-6628-01 2 187511496 187511496 G A ITGAV Missense_Mutation p.A415T 0.21 tolerated(0.64) benign(0.002) TCGA-G4-6628-01 2 187521052 187521052 C - ITGAV Frame_Shift_Del p.P549Qfs*7 0.16 TCGA-G4-6628-01 2 18768809 18768810 - T NT5C1B Frame_Shift_Ins p.R27Kfs*5 0.14 TCGA-G4-6628-01 2 189839163 189839163 C T COL3A1 5'UTR 0.35 TCGA-G4-6628-01 2 189859776 189859776 C T COL3A1 Missense_Mutation p.A487V 0.16 unknown(0) TCGA-G4-6628-01 2 190327259 190327259 C T WDR75 Silent p.R276R 0.32 TCGA-G4-6628-01 2 191827611 191827611 A G GLS Missense_Mutation p.K637E 0.38 tolerated(0.73) benign(0.01) TCGA-G4-6628-01 2 191898317 191898317 C A STAT4 Missense_Mutation p.R584L 0.20 deleterious(0.03) possibly_damaging(0.567) TCGA-G4-6628-01 2 192280950 192280950 A G MYO1B Missense_Mutation p.N1090S 0.23 tolerated(0.79) benign(0.013) TCGA-G4-6628-01 2 196642627 196642627 G A DNAH7 Missense_Mutation p.T3654M 0.12 deleterious(0.02) possibly_damaging(0.467) TCGA-G4-6628-01 2 196891652 196891652 A G DNAH7 Missense_Mutation p.Y167H 0.17 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 2 197641284 197641284 G T GTF3C3 Missense_Mutation p.P487Q 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 2 197672341 197672342 - A C2orf66 Frame_Shift_Ins p.R61Qfs*8 0.28 TCGA-G4-6628-01 2 197792311 197792311 C T PGAP1 5'Flank 0.23 TCGA-G4-6628-01 2 198257877 198257877 A G SF3B1 Missense_Mutation p.V1192A 0.20 deleterious(0) possibly_damaging(0.69) TCGA-G4-6628-01 2 198571601 198571601 C T MARS2 Missense_Mutation p.A491V 0.20 tolerated(0.14) possibly_damaging(0.689) TCGA-G4-6628-01 2 198571903 198571903 C T MARS2 Missense_Mutation p.R592W 0.34 deleterious_low_confidence(0.01) benign(0.38) TCGA-G4-6628-01 2 201355067 201355067 G A KCTD18 Missense_Mutation p.S346F 0.32 deleterious_low_confidence(0.04) benign(0.413) TCGA-G4-6628-01 2 201756681 201756681 C T NIF3L1 Silent p.C5C 0.17 TCGA-G4-6628-01 2 202521083 202521083 G A MPP4 Missense_Mutation p.R380C 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 2 204039965 204039965 G A NBEAL1 Missense_Mutation p.R2111H 0.42 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 2 204058623 204058623 T - NBEAL1 Frame_Shift_Del p.F2315Lfs*2 0.14 TCGA-G4-6628-01 2 204292195 204292196 TT - ABI2 3'UTR 0.42 TCGA-G4-6628-01 2 206980724 206980724 C T AC007383.4 RNA 0.23 TCGA-G4-6628-01 2 207833033 207833033 G T CPO Missense_Mutation p.G275V 0.09 deleterious(0) probably_damaging(0.931) TCGA-G4-6628-01 2 208866092 208866092 G A PLEKHM3 Missense_Mutation p.A91V 0.24 deleterious(0.02) benign(0.309) TCGA-G4-6628-01 2 209163369 209163369 G A PIKFYVE Missense_Mutation p.A306T 0.17 tolerated(0.09) benign(0.063) TCGA-G4-6628-01 2 209169885 209169885 C A PIKFYVE Intron 0.17 TCGA-G4-6628-01 2 210836962 210836962 C - UNC80 Frame_Shift_Del p.P2700Hfs*13 0.20 TCGA-G4-6628-01 2 211059960 211059960 C T ACADL Missense_Mutation p.A363T 0.20 tolerated(0.28) benign(0.005) TCGA-G4-6628-01 2 211059977 211059977 G A ACADL Missense_Mutation p.A357V 0.42 tolerated(0.26) benign(0.005) TCGA-G4-6628-01 2 211454891 211454891 G A CPS1 Missense_Mutation p.G264E 0.41 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 2 21224672 21224672 T - APOB Frame_Shift_Del p.K4541Sfs*8 0.14 TCGA-G4-6628-01 2 21233644 21233644 C T APOB Silent p.E2032E 0.18 TCGA-G4-6628-01 2 21234340 21234340 G A APOB Silent p.D1800D 0.15 TCGA-G4-6628-01 2 213921660 213921660 G A IKZF2 Silent p.G101G 0.21 TCGA-G4-6628-01 2 214013340 214013340 G A IKZF2 Missense_Mutation p.A5V 0.20 tolerated(0.24) benign(0.007) TCGA-G4-6628-01 2 214878766 214878766 G A SPAG16 Missense_Mutation p.A498T 0.44 deleterious(0) possibly_damaging(0.867) TCGA-G4-6628-01 2 215834997 215834998 - T ABCA12 Frame_Shift_Ins p.R1897Kfs*18 0.15 TCGA-G4-6628-01 2 216983819 216983819 G A XRCC5 Missense_Mutation p.R141Q 0.13 tolerated(0.19) benign(0) TCGA-G4-6628-01 2 218713115 218713115 C T TNS1 Missense_Mutation p.A584T 0.41 tolerated(0.31) benign(0.012) TCGA-G4-6628-01 2 218713499 218713499 C T TNS1 Missense_Mutation p.A456T 0.21 tolerated(0.46) benign(0.001) TCGA-G4-6628-01 2 219131181 219131181 G A AAMP Nonsense_Mutation p.R222* 0.11 TCGA-G4-6628-01 2 219525979 219525979 G A BCS1L Missense_Mutation p.R90H 0.38 tolerated(0.15) benign(0.021) TCGA-G4-6628-01 2 219529514 219529514 C - RNF25 Frame_Shift_Del p.G250Efs*29 0.33 TCGA-G4-6628-01 2 219603299 219603299 T C TTLL4 Silent p.V300V 0.14 TCGA-G4-6628-01 2 219883882 219883883 - G CCDC108 Frame_Shift_Ins p.V1165Rfs*8 0.19 TCGA-G4-6628-01 2 219892998 219892999 - G CCDC108 Frame_Shift_Ins p.D593* 0.29 TCGA-G4-6628-01 2 220037533 220037533 G A CNPPD1 Silent p.C336C 0.14 TCGA-G4-6628-01 2 220136241 220136242 - T TUBA4B RNA 0.16 TCGA-G4-6628-01 2 220136498 220136498 C T TUBA4B RNA 0.24 TCGA-G4-6628-01 2 220347922 220347922 C - SPEG Frame_Shift_Del p.S1915Vfs*324 0.17 TCGA-G4-6628-01 2 220349063 220349063 G A SPEG Missense_Mutation p.R2293H 0.15 benign(0.163) TCGA-G4-6628-01 2 220349184 220349184 C T SPEG Silent p.F2333F 0.16 TCGA-G4-6628-01 2 220414465 220414465 G A TMEM198 Silent p.R324R 0.15 TCGA-G4-6628-01 2 220439700 220439701 - CT INHA Frame_Shift_Ins p.L189Cfs*2 0.20 TCGA-G4-6628-01 2 220473122 220473122 G A STK11IP Missense_Mutation p.E536K 0.19 tolerated(0.29) benign(0.037) TCGA-G4-6628-01 2 223066670 223066670 A G PAX3 Silent p.Y471Y 0.16 TCGA-G4-6628-01 2 224463854 224463854 C G SCG2 Missense_Mutation p.K49N 0.18 deleterious(0.04) benign(0.312) TCGA-G4-6628-01 2 224463949 224463949 A G SCG2 Silent p.L18L 0.25 TCGA-G4-6628-01 2 224824384 224824384 C T MRPL44 Missense_Mutation p.R105C 0.15 deleterious(0) probably_damaging(0.969) TCGA-G4-6628-01 2 225668833 225668833 G A DOCK10 Nonsense_Mutation p.Q1422* 0.24 TCGA-G4-6628-01 2 226273819 226273819 T C NYAP2 Splice_Site p.X74_splice 0.20 TCGA-G4-6628-01 2 226446657 226446657 C T NYAP2 Missense_Mutation p.A175V 0.17 tolerated(1) benign(0.002) TCGA-G4-6628-01 2 227660291 227660291 G A IRS1 Missense_Mutation p.A1055V 0.17 tolerated(0.52) benign(0.056) TCGA-G4-6628-01 2 230911163 230911163 G A SLC16A14 Missense_Mutation p.R227C 0.23 tolerated(0.07) benign(0.002) TCGA-G4-6628-01 2 232263566 232263566 C T B3GNT7 Missense_Mutation p.P379L 0.41 tolerated(0.24) benign(0.003) TCGA-G4-6628-01 2 232390068 232390068 C T NMUR1 Missense_Mutation p.V323M 0.17 tolerated(0.12) possibly_damaging(0.56) TCGA-G4-6628-01 2 232457769 232457769 C T C2orf57 Missense_Mutation p.A36V 0.26 tolerated(0.71) benign(0.001) TCGA-G4-6628-01 2 232673271 232673271 C - COPS7B 3'UTR 0.17 TCGA-G4-6628-01 2 233199348 233199349 - C DIS3L2 Frame_Shift_Ins p.L768Pfs*56 0.18 TCGA-G4-6628-01 2 233200530 233200530 G A DIS3L2 Silent p.P814P 0.21 TCGA-G4-6628-01 2 233431934 233431934 G - EIF4E2 Intron 0.10 TCGA-G4-6628-01 2 233537043 233537043 G A EFHD1 Missense_Mutation p.A159T 0.16 deleterious(0.02) possibly_damaging(0.892) TCGA-G4-6628-01 2 233652024 233652024 C T GIGYF2 Nonsense_Mutation p.R255* 0.17 TCGA-G4-6628-01 2 233709104 233709104 G A GIGYF2 Missense_Mutation p.G1063E 0.18 unknown(0) TCGA-G4-6628-01 2 234357932 234357932 C T DGKD Missense_Mutation p.P600S 0.24 tolerated(0.25) benign(0.011) TCGA-G4-6628-01 2 234526894 234526894 G A UGT1A8 Missense_Mutation p.A181T 0.18 tolerated(1) benign(0.042) TCGA-G4-6628-01 2 234681161 234681161 A - UGT1A4 Frame_Shift_Del p.R524Efs*22 0.13 TCGA-G4-6628-01 2 235404913 235404913 C T ARL4C Silent p.T106T 0.18 TCGA-G4-6628-01 2 236708075 236708075 G A AGAP1 Missense_Mutation p.S289N 0.10 deleterious(0.04) probably_damaging(0.954) TCGA-G4-6628-01 2 236957902 236957902 G A AGAP1 Silent p.T697T 0.25 TCGA-G4-6628-01 2 238494649 238494649 G A RAB17 Missense_Mutation p.T50M 0.18 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 2 238727142 238727142 G A RBM44 Missense_Mutation p.S528N 0.18 tolerated(0.4) benign(0.033) TCGA-G4-6628-01 2 241494465 241494465 A T ANKMY1 5'UTR 0.25 TCGA-G4-6628-01 2 241512528 241512528 C T RNPEPL1 Intron 0.53 TCGA-G4-6628-01 2 241631677 241631677 G A AQP12A Missense_Mutation p.A104T 0.23 tolerated(0.42) possibly_damaging(0.589) TCGA-G4-6628-01 2 241657552 241657552 G A KIF1A Missense_Mutation p.R1750C 0.22 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 2 241658433 241658433 G A KIF1A Missense_Mutation p.A1735V 0.14 deleterious(0) possibly_damaging(0.615) TCGA-G4-6628-01 2 241696960 241696960 G A KIF1A Silent p.S878S 0.17 TCGA-G4-6628-01 2 242035629 242035629 A G MTERFD2 Silent p.V310V 0.18 TCGA-G4-6628-01 2 242063382 242063382 G A PASK Silent p.T962T 0.17 TCGA-G4-6628-01 2 242664557 242664557 C T ING5 3'UTR 0.13 TCGA-G4-6628-01 2 242758233 242758233 G A NEU4 Silent p.L451L 0.26 TCGA-G4-6628-01 2 243056802 243056802 C T AC093642.5 RNA 0.09 TCGA-G4-6628-01 2 243056854 243056854 A G AC093642.5 RNA 0.12 TCGA-G4-6628-01 2 24522905 24522905 C T ITSN2 Missense_Mutation p.R406Q 0.19 deleterious(0) unknown(0) TCGA-G4-6628-01 2 25611182 25611182 G T DTNB Silent p.R542R 0.18 TCGA-G4-6628-01 2 25830127 25830127 T C DTNB Silent p.G142G 0.35 TCGA-G4-6628-01 2 26804200 26804200 G A CIB4 3'UTR 0.29 TCGA-G4-6628-01 2 27282096 27282096 G A AGBL5 Missense_Mutation p.R638Q 0.12 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-G4-6628-01 2 27355201 27355201 G A PREB Missense_Mutation p.R275C 0.16 deleterious(0) possibly_damaging(0.893) TCGA-G4-6628-01 2 27601456 27601456 C T ZNF513 Missense_Mutation p.R226H 0.31 deleterious(0) possibly_damaging(0.522) TCGA-G4-6628-01 2 27601526 27601526 C T ZNF513 Missense_Mutation p.E203K 0.39 deleterious(0) possibly_damaging(0.635) TCGA-G4-6628-01 2 27684360 27684360 G A IFT172 Missense_Mutation p.R740C 0.28 deleterious(0) probably_damaging(0.961) TCGA-G4-6628-01 2 27801091 27801091 C A C2orf16 Missense_Mutation p.P551H 0.17 deleterious(0.04) benign(0.062) TCGA-G4-6628-01 2 27855503 27855503 A T GPN1 Missense_Mutation p.M120L 0.20 tolerated(0.85) benign(0.016) TCGA-G4-6628-01 2 27887283 27887283 G A SLC4A1AP Missense_Mutation p.G222R 0.15 tolerated(0.16) benign(0.015) TCGA-G4-6628-01 2 27887374 27887374 G A SLC4A1AP Missense_Mutation p.R252H 0.21 deleterious(0.03) benign(0.081) TCGA-G4-6628-01 2 27910878 27910878 G A SLC4A1AP Missense_Mutation p.G732R 0.17 tolerated(0.33) benign(0.035) TCGA-G4-6628-01 2 28764595 28764595 G A PLB1 Missense_Mutation p.A266T 0.16 tolerated(0.3) benign(0.067) TCGA-G4-6628-01 2 28825739 28825739 C T PLB1 Missense_Mutation p.R909W 0.32 deleterious(0.01) benign(0.347) TCGA-G4-6628-01 2 29917786 29917786 G T ALK Silent p.P294P 0.14 TCGA-G4-6628-01 2 30480470 30480470 G T LBH Nonsense_Mutation p.E101* 0.17 TCGA-G4-6628-01 2 31360903 31360903 C T GALNT14 Nonsense_Mutation p.W17* 0.23 TCGA-G4-6628-01 2 31560636 31560636 G T XDH Silent p.A1274A 0.17 TCGA-G4-6628-01 2 32168448 32168448 C T MEMO1 Silent p.P22P 0.08 TCGA-G4-6628-01 2 33359828 33359828 G A LTBP1 Intron 0.20 TCGA-G4-6628-01 2 33745034 33745034 T C RASGRP3 Silent p.T63T 0.43 TCGA-G4-6628-01 2 33813524 33813525 - T FAM98A Frame_Shift_Ins p.A134Sfs*7 0.14 TCGA-G4-6628-01 2 37295829 37295829 G A HEATR5B Missense_Mutation p.A391V 0.17 tolerated(1) benign(0.004) TCGA-G4-6628-01 2 39993221 39993221 G T THUMPD2 Missense_Mutation p.S260Y 0.16 deleterious(0) possibly_damaging(0.907) TCGA-G4-6628-01 2 42281233 42281233 G A PKDCC Missense_Mutation p.V274I 0.15 tolerated(0.27) benign(0.172) TCGA-G4-6628-01 2 42909689 42909689 A - MTA3 Frame_Shift_Del p.K285Nfs*19 0.16 TCGA-G4-6628-01 2 44209565 44209565 A G LRPPRC Missense_Mutation p.L53P 0.20 tolerated(0.2) benign(0.009) TCGA-G4-6628-01 2 44571726 44571726 C A PREPL Splice_Site p.X115_splice 0.13 TCGA-G4-6628-01 2 46851311 46851311 C T CRIPT Missense_Mutation p.A84V 0.15 deleterious(0) probably_damaging(0.934) TCGA-G4-6628-01 2 47184116 47184116 C T TTC7A Missense_Mutation p.R163W 0.20 deleterious(0) probably_damaging(0.987) TCGA-G4-6628-01 2 50463974 50463974 G A NRXN1 Nonsense_Mutation p.R1207* 0.16 TCGA-G4-6628-01 2 51254959 51254959 G A NRXN1 Silent p.S151S 0.20 TCGA-G4-6628-01 2 55191251 55191252 - G EML6 Frame_Shift_Ins p.K1765Efs*27 0.17 TCGA-G4-6628-01 2 55589495 55589496 - T CCDC88A Frame_Shift_Ins p.N192Kfs*12 0.17 TCGA-G4-6628-01 2 55867798 55867798 C T PNPT1 Silent p.A704A 0.41 TCGA-G4-6628-01 2 55873414 55873414 T C PNPT1 Missense_Mutation p.E573G 0.18 deleterious(0) possibly_damaging(0.9) TCGA-G4-6628-01 2 5839298 5839298 T C SOX11 3'UTR 0.22 TCGA-G4-6628-01 2 5841055 5841056 - G SOX11 3'UTR 0.36 TCGA-G4-6628-01 2 61520675 61520675 G A USP34 Missense_Mutation p.A1491V 0.15 tolerated(0.56) benign(0.013) TCGA-G4-6628-01 2 61597520 61597520 T A USP34 Missense_Mutation p.N396I 0.19 deleterious(0) probably_damaging(0.986) TCGA-G4-6628-01 2 61705930 61705930 A - XPO1 3'UTR 0.33 TCGA-G4-6628-01 2 62107457 62107457 A C CCT4 Missense_Mutation p.S115A 0.17 tolerated(1) benign(0.046) TCGA-G4-6628-01 2 64111166 64111166 A - UGP2 Frame_Shift_Del p.I174Yfs*10 0.20 TCGA-G4-6628-01 2 65245677 65245677 A G SLC1A4 Splice_Site p.X410_splice 0.18 TCGA-G4-6628-01 2 66798661 66798661 G A MEIS1 3'UTR 0.26 TCGA-G4-6628-01 2 68384493 68384493 G A WDR92 Missense_Mutation p.P28L 0.23 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 2 68692231 68692231 G C FBXO48 Missense_Mutation p.T16R 0.35 tolerated(0.52) benign(0.015) TCGA-G4-6628-01 2 69092781 69092781 G A BMP10 Silent p.S419S 0.20 TCGA-G4-6628-01 2 69870075 69870075 C T AAK1 Missense_Mutation p.G33D 0.16 tolerated(0.16) unknown(0) TCGA-G4-6628-01 2 70188139 70188141 CCT - ASPRV1 In_Frame_Del p.E227del 0.18 TCGA-G4-6628-01 2 70408841 70408841 C T C2orf42 Missense_Mutation p.G93R 0.25 tolerated(0.07) probably_damaging(0.983) TCGA-G4-6628-01 2 70905955 70905955 G A ADD2 Missense_Mutation p.H422Y 0.16 deleterious(0.04) benign(0.288) TCGA-G4-6628-01 2 73492550 73492550 C T FBXO41 Missense_Mutation p.R475H 0.14 tolerated(0.53) benign(0.155) TCGA-G4-6628-01 2 73651884 73651884 A G ALMS1 Missense_Mutation p.K364R 0.21 benign(0.152) TCGA-G4-6628-01 2 73747089 73747089 A G ALMS1 Missense_Mutation p.K3242E 0.33 possibly_damaging(0.703) TCGA-G4-6628-01 2 74072351 74072351 C T STAMBP Nonsense_Mutation p.R113* 0.18 TCGA-G4-6628-01 2 74275078 74275078 C A TET3 Silent p.P543P 0.20 TCGA-G4-6628-01 2 74734792 74734792 C T PCGF1 Missense_Mutation p.A2T 0.26 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-G4-6628-01 2 74742954 74742954 G A TLX2 Missense_Mutation p.A199T 0.27 tolerated(0.13) possibly_damaging(0.447) TCGA-G4-6628-01 2 74761842 74761842 G A LOXL3 Missense_Mutation p.R547W 0.16 deleterious(0.02) probably_damaging(1) TCGA-G4-6628-01 2 74902328 74902329 TC - SEMA4F Frame_Shift_Del p.S399Pfs*3 0.16 TCGA-G4-6628-01 2 77746634 77746634 T - LRRTM4 Frame_Shift_Del p.I121Lfs*44 0.17 TCGA-G4-6628-01 2 80540732 80540733 - A CTNNA2 Intron 0.23 TCGA-G4-6628-01 2 85892449 85892449 C A SFTPB Missense_Mutation p.R224M 0.17 deleterious(0) possibly_damaging(0.839) TCGA-G4-6628-01 2 86832460 86832460 C T RNF103 Missense_Mutation p.M188I 0.17 tolerated(0.56) benign(0.293) TCGA-G4-6628-01 2 86850025 86850025 C A RNF103-CHMP3 Intron 0.16 TCGA-G4-6628-01 2 88125194 88125194 C T RGPD2 Missense_Mutation p.A19T 0.17 tolerated(0.2) benign(0) TCGA-G4-6628-01 2 8887312 8887312 G A KIDINS220 Missense_Mutation p.A1183V 0.13 tolerated(0.17) unknown(0) TCGA-G4-6628-01 2 88885465 88885465 G T EIF2AK3 Missense_Mutation p.P515H 0.18 deleterious(0) possibly_damaging(0.686) TCGA-G4-6628-01 2 88890495 88890495 G A EIF2AK3 Silent p.S281S 0.17 TCGA-G4-6628-01 2 8931270 8931270 G T KIDINS220 Missense_Mutation p.P454H 0.17 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 2 89513156 89513156 C T IGKV1-27 Missense_Mutation p.A35T 0.19 deleterious(0.03) possibly_damaging(0.793) TCGA-G4-6628-01 2 91805405 91805405 T C AC116050.1 Intron 0.23 TCGA-G4-6628-01 2 9514971 9514971 C - ASAP2 Frame_Shift_Del p.H548Qfs*57 0.13 TCGA-G4-6628-01 2 96012789 96012789 C T KCNIP3 Intron 0.45 TCGA-G4-6628-01 2 96689742 96689742 G T GPAT2 Missense_Mutation p.Q609K 0.25 deleterious(0.03) benign(0.092) TCGA-G4-6628-01 2 96852515 96852515 G T STARD7 Silent p.R356R 0.19 TCGA-G4-6628-01 2 96958727 96958727 G A SNRNP200 Missense_Mutation p.H715Y 0.20 tolerated(0.5) benign(0.049) TCGA-G4-6628-01 2 97217113 97217113 G T ARID5A Missense_Mutation p.G283V 0.22 deleterious(0.01) probably_damaging(0.93) TCGA-G4-6628-01 2 97274391 97274391 C T KANSL3 Missense_Mutation p.S532N 0.22 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-G4-6628-01 2 97368451 97368451 G A LMAN2L 3'Flank 0.33 TCGA-G4-6628-01 2 97505484 97505484 C T ANKRD23 Missense_Mutation p.E268K 0.20 tolerated(1) benign(0) TCGA-G4-6628-01 2 99651715 99651715 G A TSGA10 Missense_Mutation p.A531V 0.17 tolerated(0.07) benign(0.442) TCGA-G4-6628-01 3 100275791 100275791 G A TMEM45A Missense_Mutation p.M126I 0.31 deleterious(0.04) benign(0.056) TCGA-G4-6628-01 3 10331825 10331825 C T GHRL Missense_Mutation p.G14S 0.21 tolerated(1) benign(0.001) TCGA-G4-6628-01 3 108107918 108107918 G A MYH15 Missense_Mutation p.R1832C 0.22 deleterious(0.02) benign(0.01) TCGA-G4-6628-01 3 108156457 108156457 C A MYH15 Silent p.R1075R 0.25 TCGA-G4-6628-01 3 108572602 108572602 G A TRAT1 Missense_Mutation p.V147I 0.30 tolerated(0.53) benign(0.001) TCGA-G4-6628-01 3 109033404 109033404 T C DPPA2 Splice_Site 0.30 TCGA-G4-6628-01 3 109046796 109046796 G A DPPA4 3'UTR 0.22 TCGA-G4-6628-01 3 111710642 111710642 G A ABHD10 3'UTR 0.32 TCGA-G4-6628-01 3 112693867 112693867 C T CD200R1 5'UTR 0.26 TCGA-G4-6628-01 3 113528418 113528418 T - ATP6V1A 3'UTR 0.24 TCGA-G4-6628-01 3 113655235 113655235 T C GRAMD1C Missense_Mutation p.S527P 0.16 tolerated(0.24) benign(0.077) TCGA-G4-6628-01 3 11606331 11606331 G A VGLL4 Silent p.S145S 0.28 TCGA-G4-6628-01 3 119155726 119155727 - T TMEM39A Frame_Shift_Ins p.Y342Ifs*3 0.20 TCGA-G4-6628-01 3 119526221 119526221 C T NR1I2 Missense_Mutation p.R81C 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-G4-6628-01 3 119528926 119528926 C T NR1I2 Silent p.N111N 0.23 TCGA-G4-6628-01 3 121238823 121238823 G A POLQ Missense_Mutation p.R455C 0.22 deleterious(0) probably_damaging(0.982) TCGA-G4-6628-01 3 122433185 122433185 T C PARP14 Silent p.G1303G 0.27 TCGA-G4-6628-01 3 122641163 122641163 G A SEMA5B Silent p.S522S 0.35 TCGA-G4-6628-01 3 122842976 122842976 C T PDIA5 Missense_Mutation p.R225C 0.14 deleterious(0.01) benign(0.022) TCGA-G4-6628-01 3 122849378 122849378 C T PDIA5 Silent p.G275G 0.24 TCGA-G4-6628-01 3 126155131 126155131 C T CCDC37 Intron 0.26 TCGA-G4-6628-01 3 126749219 126749219 A C PLXNA1 Missense_Mutation p.H1732P 0.42 tolerated(0.23) benign(0.09) TCGA-G4-6628-01 3 126749233 126749233 C T PLXNA1 Missense_Mutation p.R1737C 0.37 deleterious(0.04) probably_damaging(0.91) TCGA-G4-6628-01 3 127396605 127396605 C - ABTB1 Frame_Shift_Del p.P318Qfs*36 0.33 TCGA-G4-6628-01 3 127779010 127779010 C A SEC61A1 Missense_Mutation p.P140T 0.30 tolerated(0.23) benign(0.213) TCGA-G4-6628-01 3 128200024 128200024 G - GATA2 Frame_Shift_Del p.F428Sfs*49 0.17 TCGA-G4-6628-01 3 128627883 128627883 G T ACAD9 Missense_Mutation p.G476C 0.30 deleterious(0.01) benign(0.019) TCGA-G4-6628-01 3 129325063 129325063 G A PLXND1 Silent p.C140C 0.26 TCGA-G4-6628-01 3 130107746 130107746 A - COL6A5 Frame_Shift_Del p.K730Nfs*10 0.26 TCGA-G4-6628-01 3 130311932 130311932 G A COL6A6 Missense_Mutation p.G1467R 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 3 131217092 131217092 C A MRPL3 Silent p.T133T 0.10 TCGA-G4-6628-01 3 131217099 131217099 T A MRPL3 Missense_Mutation p.K131I 0.09 deleterious(0) probably_damaging(0.947) TCGA-G4-6628-01 3 132320981 132320982 - T ACKR4 3'UTR 0.16 TCGA-G4-6628-01 3 133666103 133666103 G - SLCO2A1 Frame_Shift_Del p.P431Lfs*49 0.21 TCGA-G4-6628-01 3 134851814 134851814 A G EPHB1 Missense_Mutation p.Q407R 0.20 tolerated(0.06) probably_damaging(0.925) TCGA-G4-6628-01 3 13544391 13544391 G T HDAC11 Missense_Mutation p.G187V 0.28 deleterious(0) probably_damaging(0.992) TCGA-G4-6628-01 3 13670439 13670439 T C FBLN2 Silent p.C868C 0.28 TCGA-G4-6628-01 3 138195299 138195299 A G ESYT3 Silent p.L863L 0.27 TCGA-G4-6628-01 3 138329717 138329717 C T FAIM 5'UTR 0.28 TCGA-G4-6628-01 3 140122616 140122616 C A CLSTN2 Silent p.A126A 0.27 TCGA-G4-6628-01 3 140140079 140140079 G T CLSTN2 Missense_Mutation p.Q250H 0.33 tolerated(0.45) benign(0.003) TCGA-G4-6628-01 3 141497124 141497124 G C GRK7 5'UTR 0.29 TCGA-G4-6628-01 3 142840148 142840148 C T CHST2 Missense_Mutation p.R164W 0.24 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 3 142840876 142840876 G A CHST2 Silent p.L406L 0.24 TCGA-G4-6628-01 3 14861729 14861729 C T FGD5 Missense_Mutation p.A384V 0.37 tolerated_low_confidence(0.38) benign(0.002) TCGA-G4-6628-01 3 148891207 148891207 T - CP 3'UTR 0.33 TCGA-G4-6628-01 3 15116197 15116197 G A ZFYVE20 Missense_Mutation p.R483C 0.30 tolerated(0.13) benign(0.035) TCGA-G4-6628-01 3 151545918 151545918 A C AADAC Missense_Mutation p.R386S 0.30 deleterious(0) possibly_damaging(0.616) TCGA-G4-6628-01 3 152555113 152555113 A - P2RY1 3'UTR 0.18 TCGA-G4-6628-01 3 153839962 153839962 G A ARHGEF26 Missense_Mutation p.A61T 0.24 tolerated_low_confidence(0.38) benign(0.002) TCGA-G4-6628-01 3 153998375 153998375 T - DHX36 Frame_Shift_Del p.R854Efs*4 0.25 TCGA-G4-6628-01 3 154860095 154860095 G T MME Missense_Mutation p.K388N 0.24 deleterious(0) probably_damaging(0.99) TCGA-G4-6628-01 3 156272766 156272766 A G SSR3 Missense_Mutation p.I38T 0.20 deleterious(0) possibly_damaging(0.645) TCGA-G4-6628-01 3 159706813 159706813 A G IL12A 5'UTR 0.21 TCGA-G4-6628-01 3 159706922 159706922 G A IL12A Missense_Mutation p.V27M 0.24 tolerated_low_confidence(0.11) benign(0.053) TCGA-G4-6628-01 3 166958652 166958652 T C ZBBX Missense_Mutation p.T817A 0.27 deleterious(0.05) benign(0.093) TCGA-G4-6628-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.32 TCGA-G4-6628-01 3 169511419 169511419 T - LRRC34 3'UTR 0.12 TCGA-G4-6628-01 3 169511641 169511641 A - LRRC34 Intron 0.24 TCGA-G4-6628-01 3 171362755 171362755 C A PLD1 Missense_Mutation p.D830Y 0.35 deleterious(0) benign(0.108) TCGA-G4-6628-01 3 172482103 172482103 G A ECT2 Missense_Mutation p.M368I 0.19 tolerated(0.14) benign(0.002) TCGA-G4-6628-01 3 178543412 178543412 G T KCNMB2 Silent p.L31L 0.29 TCGA-G4-6628-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.23 tolerated(0.06) probably_damaging(0.998) TCGA-G4-6628-01 3 179052260 179052260 T - ZNF639 3'UTR 0.12 TCGA-G4-6628-01 3 179280933 179280933 C A ACTL6A Intron 0.13 TCGA-G4-6628-01 3 180324076 180324076 G A TTC14 Missense_Mutation p.R322H 0.25 tolerated(0.07) possibly_damaging(0.718) TCGA-G4-6628-01 3 183528443 183528443 G A YEATS2 3'UTR 0.33 TCGA-G4-6628-01 3 183667630 183667630 C T ABCC5 Silent p.T1046T 0.21 TCGA-G4-6628-01 3 183823130 183823130 A G HTR3E Missense_Mutation p.H238R 0.35 tolerated(0.34) benign(0.006) TCGA-G4-6628-01 3 183900632 183900633 - C AP2M1 Frame_Shift_Ins p.I386Hfs*6 0.13 TCGA-G4-6628-01 3 184021823 184021823 T C PSMD2 Missense_Mutation p.L471P 0.33 tolerated(0.25) possibly_damaging(0.905) TCGA-G4-6628-01 3 184052766 184052766 G - EIF4G1 3'UTR 0.64 TCGA-G4-6628-01 3 184299129 184299129 C T EPHB3 Missense_Mutation p.R941W 0.25 deleterious(0) probably_damaging(0.953) TCGA-G4-6628-01 3 18436156 18436156 C A SATB1 Missense_Mutation p.R335I 0.18 deleterious(0) probably_damaging(0.965) TCGA-G4-6628-01 3 187442788 187442788 G A BCL6 Missense_Mutation p.R640W 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 3 192126026 192126026 G - FGF12 5'UTR 0.23 TCGA-G4-6628-01 3 195399472 195399472 C T SDHAP2 RNA 0.20 TCGA-G4-6628-01 3 195608936 195608936 C A TNK2 Missense_Mutation p.K354N 0.30 deleterious(0) probably_damaging(0.991) TCGA-G4-6628-01 3 19575411 19575411 C T KCNH8 Silent p.S1048S 0.29 TCGA-G4-6628-01 3 196214327 196214327 C T RNF168 Silent p.A167A 0.25 TCGA-G4-6628-01 3 19959749 19959749 C T EFHB Silent p.T384T 0.28 TCGA-G4-6628-01 3 20216536 20216536 T C SGOL1 Missense_Mutation p.T163A 0.15 tolerated(0.44) benign(0.004) TCGA-G4-6628-01 3 25668727 25668727 C T TOP2B Missense_Mutation p.R651H 0.24 deleterious(0) probably_damaging(0.931) TCGA-G4-6628-01 3 25671551 25671551 C T TOP2B Missense_Mutation p.R548H 0.26 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 3 3146610 3146610 G A IL5RA Missense_Mutation p.A20V 0.26 tolerated(0.18) benign(0.014) TCGA-G4-6628-01 3 32030702 32030702 C T ZNF860 Missense_Mutation p.T44M 0.26 deleterious(0.01) probably_damaging(0.916) TCGA-G4-6628-01 3 33135279 33135279 C T TMPPE Missense_Mutation p.G137S 0.32 tolerated(0.78) benign(0.002) TCGA-G4-6628-01 3 33406149 33406149 C T FBXL2 Silent p.C76C 0.28 TCGA-G4-6628-01 3 36780053 36780053 C T DCLK3 Missense_Mutation p.R33H 0.20 tolerated(0.09) benign(0.005) TCGA-G4-6628-01 3 36897260 36897260 C A TRANK1 Missense_Mutation p.R1274L 0.33 deleterious(0) probably_damaging(0.99) TCGA-G4-6628-01 3 37368165 37368165 C T GOLGA4 Silent p.S1618S 0.23 TCGA-G4-6628-01 3 38045751 38045751 C A VILL Missense_Mutation p.P604H 0.12 tolerated(0.05) possibly_damaging(0.873) TCGA-G4-6628-01 3 38518906 38518906 G A ACVR2B Missense_Mutation p.A61T 0.43 tolerated(0.05) benign(0.408) TCGA-G4-6628-01 3 39151535 39151535 C T TTC21A Missense_Mutation p.A58V 0.35 deleterious(0) probably_damaging(0.911) TCGA-G4-6628-01 3 42304966 42304966 C T CCK Missense_Mutation p.E53K 0.28 deleterious(0.01) probably_damaging(0.951) TCGA-G4-6628-01 3 42680193 42680193 G A NKTR Silent p.G999G 0.27 TCGA-G4-6628-01 3 42727514 42727514 C T KLHL40 Missense_Mutation p.A135V 0.25 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 3 43641880 43641880 A - ANO10 Frame_Shift_Del p.F111Lfs*9 0.22 TCGA-G4-6628-01 3 45127429 45127429 C T CDCP1 Missense_Mutation p.E738K 0.24 deleterious(0) benign(0.231) TCGA-G4-6628-01 3 4558267 4558267 G T ITPR1 Missense_Mutation p.G31V 0.28 deleterious(0) possibly_damaging(0.675) TCGA-G4-6628-01 3 45807141 45807143 GAA - SLC6A20 In_Frame_Del p.F397del 0.24 TCGA-G4-6628-01 3 46417157 46417157 G - CCR5 3'UTR 0.20 TCGA-G4-6628-01 3 47459294 47459294 C T SCAP Missense_Mutation p.V824M 0.41 tolerated(0.21) benign(0.224) TCGA-G4-6628-01 3 47537654 47537654 C T ELP6 Missense_Mutation p.A236T 0.29 tolerated(1) benign(0.001) TCGA-G4-6628-01 3 48266977 48266977 T C CAMP 3'UTR 0.22 TCGA-G4-6628-01 3 48510574 48510574 C T SHISA5 Missense_Mutation p.A219T 0.20 tolerated(0.22) benign(0) TCGA-G4-6628-01 3 48610778 48610778 C - COL7A1 Frame_Shift_Del p.E2208Sfs*12 0.11 TCGA-G4-6628-01 3 48698739 48698739 G A CELSR3 Silent p.R443R 0.24 TCGA-G4-6628-01 3 48730411 48730411 T C IP6K2 Missense_Mutation p.H135R 0.28 tolerated(0.17) benign(0.07) TCGA-G4-6628-01 3 49044174 49044174 G A P4HTM Missense_Mutation p.R509H 0.29 deleterious(0.05) possibly_damaging(0.898) TCGA-G4-6628-01 3 49155501 49155501 A G USP19 Silent p.G59G 0.40 TCGA-G4-6628-01 3 49832755 49832755 G A CDHR4 Missense_Mutation p.A302V 0.24 tolerated(0.09) benign(0.005) TCGA-G4-6628-01 3 50230834 50230834 C T GNAT1 Missense_Mutation p.R96C 0.43 deleterious(0.05) benign(0.004) TCGA-G4-6628-01 3 50256334 50256334 G A SLC38A3 RNA 0.31 TCGA-G4-6628-01 3 50332846 50332846 T C HYAL3 Missense_Mutation p.Q63R 0.16 deleterious(0.01) possibly_damaging(0.836) TCGA-G4-6628-01 3 50677938 50677938 T C MAPKAPK3 Splice_Site p.X120_splice 0.37 TCGA-G4-6628-01 3 50685440 50685440 G A MAPKAPK3 Missense_Mutation p.G371D 0.29 tolerated(0.09) benign(0.002) TCGA-G4-6628-01 3 51264718 51264718 G A DOCK3 Missense_Mutation p.C461Y 0.28 tolerated(0.2) probably_damaging(0.999) TCGA-G4-6628-01 3 51264768 51264768 G T DOCK3 Missense_Mutation p.V478F 0.21 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 3 51669684 51669684 G A RAD54L2 Missense_Mutation p.M406I 0.25 deleterious(0.01) possibly_damaging(0.497) TCGA-G4-6628-01 3 51697000 51697000 C - RAD54L2 Frame_Shift_Del p.S1325Pfs*18 0.28 TCGA-G4-6628-01 3 51743202 51743202 C T GRM2 Missense_Mutation p.A68V 0.30 deleterious(0.02) probably_damaging(1) TCGA-G4-6628-01 3 51989764 51989764 C T GPR62 Silent p.N32N 0.31 TCGA-G4-6628-01 3 52021626 52021626 C A ACY1 Missense_Mutation p.L303I 0.31 tolerated(0.67) benign(0.016) TCGA-G4-6628-01 3 52356727 52356727 C T DNAH1 Missense_Mutation p.P90L 0.21 possibly_damaging(0.856) TCGA-G4-6628-01 3 53289966 53289966 C T TKT 5'UTR 0.15 TCGA-G4-6628-01 3 53353457 53353457 G A DCP1A Silent p.H116H 0.19 TCGA-G4-6628-01 3 53902712 53902712 T - ACTR8 3'UTR 0.12 TCGA-G4-6628-01 3 55984497 55984497 G A ERC2 Missense_Mutation p.R787C 0.27 deleterious(0) probably_damaging(0.973) TCGA-G4-6628-01 3 56468947 56468947 C T ERC2 Missense_Mutation p.R30Q 0.37 deleterious(0.02) probably_damaging(0.945) TCGA-G4-6628-01 3 57107881 57107881 A G SPATA12 Silent p.S53S 0.22 TCGA-G4-6628-01 3 57646498 57646498 C - DENND6A Frame_Shift_Del p.V230Wfs*2 0.20 TCGA-G4-6628-01 3 63264374 63264374 C T SYNPR Missense_Mutation p.R14W 0.31 deleterious(0.01) possibly_damaging(0.649) TCGA-G4-6628-01 3 63594814 63594814 C T SYNPR Missense_Mutation p.T141I 0.21 deleterious(0) probably_damaging(0.931) TCGA-G4-6628-01 3 64601667 64601667 G A ADAMTS9 Missense_Mutation p.T998M 0.24 tolerated(0.2) benign(0.018) TCGA-G4-6628-01 3 65364976 65364976 G A MAGI1 Silent p.I985I 0.16 TCGA-G4-6628-01 3 67451204 67451204 T C SUCLG2 Silent p.K378K 0.20 TCGA-G4-6628-01 3 7188217 7188217 C T GRM7 Missense_Mutation p.P200S 0.20 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 3 7621020 7621071 TGGCACCGCTCAATCAGCGGAAAAGGTAAGTGAAAATGCACATCATAATATG GGCACCGCTCAATCAGCGGAAAAGGTAAGTGAAAATGCACATCATAATATGT GRM7 Splice_Site p.X809_splice 0.18 TCGA-G4-6628-01 3 81630325 81630325 G A GBE1 Silent p.S479S 0.27 TCGA-G4-6628-01 3 88189132 88189132 T A ZNF654 Missense_Mutation p.H224Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 3 9514945 9514945 G A SETD5 Missense_Mutation p.R1074Q 0.28 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 3 95374465 95374465 C T MTHFD2P1 RNA 0.27 TCGA-G4-6628-01 3 9785455 9785455 G T BRPF1 Silent p.T835T 0.16 TCGA-G4-6628-01 3 97869104 97869104 T C OR5H14 Missense_Mutation p.L292P 0.31 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 3 98217221 98217221 G T OR5K2 Nonsense_Mutation p.G233* 0.31 TCGA-G4-6628-01 3 98487273 98487273 G A ST3GAL6 Splice_Site 0.29 TCGA-G4-6628-01 4 100201408 100201408 G A ADH1A Missense_Mutation p.A286V 0.30 deleterious(0) benign(0.399) TCGA-G4-6628-01 4 100829887 100829887 A - DNAJB14 Frame_Shift_Del p.F206Lfs*48 0.23 TCGA-G4-6628-01 4 101111170 101111170 G A DDIT4L 5'UTR 0.22 TCGA-G4-6628-01 4 1019160 1019161 - G FGFRL1 3'UTR 0.26 TCGA-G4-6628-01 4 102030146 102030146 C A PPP3CA Missense_Mutation p.G117W 0.14 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 4 103189225 103189225 T - SLC39A8 Frame_Shift_Del p.E285Sfs*8 0.22 TCGA-G4-6628-01 4 104061486 104061486 A T CENPE Missense_Mutation p.I1947N 0.24 benign(0.141) TCGA-G4-6628-01 4 104068741 104068741 C A CENPE Missense_Mutation p.Q1302H 0.33 possibly_damaging(0.646) TCGA-G4-6628-01 4 104082532 104082532 G A CENPE Missense_Mutation p.A642V 0.23 probably_damaging(0.989) TCGA-G4-6628-01 4 110662154 110662155 - T CFI Frame_Shift_Ins p.N549Kfs*19 0.14 TCGA-G4-6628-01 4 111553506 111553506 G A PITX2 Silent p.G59G 0.14 TCGA-G4-6628-01 4 113510873 113510873 C T C4orf21 Intron 0.24 TCGA-G4-6628-01 4 113568496 113568496 T C LARP7 Missense_Mutation p.I270T 0.23 tolerated(0.72) benign(0.001) TCGA-G4-6628-01 4 114530359 114530359 C T CAMK2D Missense_Mutation p.R75Q 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G4-6628-01 4 115544588 115544589 CA - UGT8 Frame_Shift_Del p.T185Rfs*31 0.20 TCGA-G4-6628-01 4 119237426 119237426 C A PRSS12 Missense_Mutation p.E401D 0.33 deleterious(0) probably_damaging(0.996) TCGA-G4-6628-01 4 122853811 122853811 G A TRPC3 Missense_Mutation p.A201V 0.25 tolerated(0.06) benign(0.151) TCGA-G4-6628-01 4 126329826 126329826 A G FAT4 Missense_Mutation p.N1933D 0.10 probably_damaging(0.999) TCGA-G4-6628-01 4 126372189 126372189 A G FAT4 Missense_Mutation p.N3340D 0.24 benign(0.005) TCGA-G4-6628-01 4 128812291 128812291 G A PLK4 Silent p.K625K 0.23 TCGA-G4-6628-01 4 128938583 128938583 C T C4orf29 Missense_Mutation p.A179V 0.24 tolerated(0.44) possibly_damaging(0.733) TCGA-G4-6628-01 4 135121505 135121505 C A PABPC4L Missense_Mutation p.D282Y 0.24 deleterious(0) probably_damaging(0.972) TCGA-G4-6628-01 4 13589391 13589391 T G BOD1L1 Missense_Mutation p.E2762A 0.26 possibly_damaging(0.637) TCGA-G4-6628-01 4 13616286 13616286 T - BOD1L1 Frame_Shift_Del p.K236Nfs*65 0.20 TCGA-G4-6628-01 4 141315040 141315040 T C CLGN Silent p.V435V 0.22 TCGA-G4-6628-01 4 142143548 142143548 C T ZNF330 Missense_Mutation p.A8V 0.22 tolerated(0.12) possibly_damaging(0.812) TCGA-G4-6628-01 4 144826638 144826638 A G GYPE Missense_Mutation p.V8A 0.24 deleterious_low_confidence(0.01) benign(0.294) TCGA-G4-6628-01 4 146058598 146058598 C A OTUD4 Missense_Mutation p.R1045M 0.24 deleterious_low_confidence(0) unknown(0) TCGA-G4-6628-01 4 146744612 146744612 G T ZNF827 Missense_Mutation p.P782H 0.24 tolerated(0.07) benign(0.153) TCGA-G4-6628-01 4 147561190 147561190 G A POU4F2 Missense_Mutation p.A154T 0.41 tolerated_low_confidence(0.5) benign(0.042) TCGA-G4-6628-01 4 147561536 147561536 G A POU4F2 Missense_Mutation p.R269H 0.28 deleterious(0) probably_damaging(0.991) TCGA-G4-6628-01 4 148876466 148876466 G T ARHGAP10 Splice_Site p.X464_splice 0.25 TCGA-G4-6628-01 4 152096479 152096479 T A SH3D19 Missense_Mutation p.I13F 0.28 deleterious(0) possibly_damaging(0.707) TCGA-G4-6628-01 4 153244294 153244295 - T FBXW7 Frame_Shift_Ins p.N621Kfs*23 0.16 TCGA-G4-6628-01 4 155219096 155219096 C T DCHS2 Missense_Mutation p.G1669S 0.24 tolerated(0.07) possibly_damaging(0.743) TCGA-G4-6628-01 4 155411088 155411088 C T DCHS2 Missense_Mutation p.G474R 0.19 deleterious(0) probably_damaging(0.99) TCGA-G4-6628-01 4 155412123 155412123 G A DCHS2 Missense_Mutation p.R129W 0.29 deleterious(0) probably_damaging(0.983) TCGA-G4-6628-01 4 155528109 155528109 C T FGG Missense_Mutation p.V293M 0.26 deleterious(0.02) probably_damaging(0.969) TCGA-G4-6628-01 4 155719354 155719355 - A RBM46 Frame_Shift_Ins p.N183Kfs*10 0.20 TCGA-G4-6628-01 4 15597727 15597727 G A CC2D2A Missense_Mutation p.R1445Q 0.11 tolerated(1) benign(0.002) TCGA-G4-6628-01 4 15780118 15780118 C T CD38 Silent p.G27G 0.29 TCGA-G4-6628-01 4 162841598 162841599 - T FSTL5 Frame_Shift_Ins p.Q123Tfs*9 0.16 TCGA-G4-6628-01 4 165878927 165878927 C A FAM218A 3'UTR 0.30 TCGA-G4-6628-01 4 167022090 167022090 T A TLL1 3'UTR 0.30 TCGA-G4-6628-01 4 170028304 170028304 T G SH3RF1 Missense_Mutation p.K731T 0.14 deleterious(0) possibly_damaging(0.848) TCGA-G4-6628-01 4 170523823 170523824 - A NEK1 5'UTR 0.16 TCGA-G4-6628-01 4 176622806 176622806 C T GPM6A Silent p.A50A 0.24 TCGA-G4-6628-01 4 177093636 177093636 A G WDR17 Silent p.K1110K 0.21 TCGA-G4-6628-01 4 177138010 177138010 G A ASB5 Missense_Mutation p.T274M 0.28 deleterious(0) possibly_damaging(0.466) TCGA-G4-6628-01 4 177190101 177190101 C T ASB5 Silent p.R53R 0.30 TCGA-G4-6628-01 4 184205443 184205443 G A WWC2 Missense_Mutation p.R983H 0.25 tolerated(0.06) benign(0.028) TCGA-G4-6628-01 4 184922619 184922619 C T STOX2 Missense_Mutation p.T103M 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-G4-6628-01 4 185550399 185550399 A - CASP3 3'UTR 0.33 TCGA-G4-6628-01 4 185678332 185678332 G A ACSL1 Missense_Mutation p.R682W 0.26 deleterious(0.03) benign(0.095) TCGA-G4-6628-01 4 187004317 187004317 A - TLR3 Frame_Shift_Del p.N494Mfs*15 0.12 TCGA-G4-6628-01 4 187532836 187532836 G T FAT1 Missense_Mutation p.P3186H 0.24 benign(0.098) TCGA-G4-6628-01 4 187539013 187539013 G A FAT1 Silent p.T2909T 0.35 TCGA-G4-6628-01 4 20555508 20555508 C A SLIT2 Missense_Mutation p.P881H 0.16 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 4 22446596 22446596 C T GPR125 Missense_Mutation p.D236N 0.24 deleterious(0.05) benign(0.403) TCGA-G4-6628-01 4 25162130 25162131 - A SEPSECS 5'Flank 0.44 TCGA-G4-6628-01 4 3255144 3255144 C T MSANTD1 Silent p.S177S 0.34 TCGA-G4-6628-01 4 3419210 3419210 G A RGS12 Silent p.S901S 0.24 TCGA-G4-6628-01 4 367321 367321 G C ZNF141 Silent p.R365R 0.22 TCGA-G4-6628-01 4 39318546 39318546 C A RFC1 Nonsense_Mutation p.E398* 0.15 TCGA-G4-6628-01 4 39779360 39779360 C T UBE2K Missense_Mutation p.A153V 0.28 deleterious(0) probably_damaging(0.963) TCGA-G4-6628-01 4 40438580 40438580 G A RBM47 Missense_Mutation p.A403V 0.36 tolerated_low_confidence(0.18) probably_damaging(0.985) TCGA-G4-6628-01 4 46125909 46125910 - A GABRG1 Frame_Shift_Ins p.L8Sfs*12 0.13 TCGA-G4-6628-01 4 47514728 47514728 C A ATP10D Silent p.I57I 0.30 TCGA-G4-6628-01 4 52894220 52894220 G A SGCB Missense_Mutation p.R223C 0.25 deleterious(0.01) possibly_damaging(0.823) TCGA-G4-6628-01 4 54231647 54231647 G T SCFD2 Missense_Mutation p.F154L 0.37 tolerated(1) benign(0) TCGA-G4-6628-01 4 55968595 55968595 C T KDR Missense_Mutation p.A690T 0.23 tolerated(0.08) benign(0.074) TCGA-G4-6628-01 4 56875932 56875932 C T CEP135 Missense_Mutation p.R790C 0.23 deleterious(0.04) benign(0.086) TCGA-G4-6628-01 4 57221466 57221466 T G AASDH Silent p.R329R 0.18 TCGA-G4-6628-01 4 6082022 6082022 C T JAKMIP1 Silent p.A373A 0.28 TCGA-G4-6628-01 4 6107339 6107339 C T JAKMIP1 Missense_Mutation p.R162H 0.24 deleterious(0) possibly_damaging(0.647) TCGA-G4-6628-01 4 62935976 62935976 G A LPHN3 Missense_Mutation p.A1254T 0.26 tolerated(0.33) benign(0.05) TCGA-G4-6628-01 4 657985 657985 G T PDE6B Nonsense_Mutation p.E702* 0.26 TCGA-G4-6628-01 4 6719290 6719290 G A BLOC1S4 3'UTR 0.22 TCGA-G4-6628-01 4 76570798 76570798 T C G3BP2 Missense_Mutation p.D422G 0.33 tolerated(0.51) probably_damaging(0.991) TCGA-G4-6628-01 4 77357223 77357223 A C SHROOM3 Missense_Mutation p.E6D 0.37 tolerated_low_confidence(0.22) benign(0.237) TCGA-G4-6628-01 4 77917591 77917591 G A SEPT11 Missense_Mutation p.R14Q 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6628-01 4 8089975 8089975 G A ABLIM2 Silent p.N125N 0.21 TCGA-G4-6628-01 4 83347220 83347220 G T HNRNPDL Missense_Mutation p.P419T 0.22 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-G4-6628-01 4 8368724 8368724 G A ACOX3 Silent p.N689N 0.22 TCGA-G4-6628-01 4 84374845 84374845 G A HELQ Missense_Mutation p.T184I 0.22 tolerated_low_confidence(0.26) benign(0.017) TCGA-G4-6628-01 4 8601231 8601231 C T CPZ Intron 0.29 TCGA-G4-6628-01 4 860215 860215 G A GAK Missense_Mutation p.P994S 0.20 tolerated(0.39) benign(0.002) TCGA-G4-6628-01 4 87610322 87610322 G T PTPN13 Silent p.L175L 0.36 TCGA-G4-6628-01 4 88415423 88415423 T C SPARCL1 Missense_Mutation p.R177G 0.26 tolerated(0.21) benign(0.001) TCGA-G4-6628-01 4 88731888 88731888 G T IBSP Missense_Mutation p.G126V 0.20 deleterious(0) probably_damaging(0.976) TCGA-G4-6628-01 4 88959429 88959429 G A PKD2 Silent p.G290G 0.28 TCGA-G4-6628-01 4 89015774 89015774 C T ABCG2 Missense_Mutation p.C592Y 0.25 deleterious(0.01) benign(0.097) TCGA-G4-6628-01 4 90844324 90844324 G A MMRN1 Missense_Mutation p.E286K 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6628-01 4 91389426 91389426 G A CCSER1 Missense_Mutation p.A549T 0.23 tolerated(0.17) probably_damaging(0.977) TCGA-G4-6628-01 4 952189 952189 C T TMEM175 Missense_Mutation p.R474W 0.56 tolerated(0.06) benign(0.007) TCGA-G4-6628-01 4 9785349 9785349 G C DRD5 3'UTR 0.10 TCGA-G4-6628-01 4 9785421 9785421 G T DRD5 3'UTR 0.07 TCGA-G4-6628-01 4 9785437 9785437 G A DRD5 3'UTR 0.23 TCGA-G4-6628-01 4 982590 982590 G A SLC26A1 3'UTR 0.33 TCGA-G4-6628-01 4 984139 984139 G A SLC26A1 Silent p.G196G 0.27 TCGA-G4-6628-01 4 99850260 99850260 C G EIF4E Missense_Mutation p.A2P 0.29 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-G4-6628-01 5 101574975 101574975 G A SLCO4C1 Missense_Mutation p.A665V 0.28 tolerated(0.06) probably_damaging(0.938) TCGA-G4-6628-01 5 102353054 102353054 A G PAM Missense_Mutation p.H783R 0.21 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 5 108436199 108436199 A G FER Missense_Mutation p.E676G 0.14 deleterious(0) benign(0.351) TCGA-G4-6628-01 5 110454738 110454738 G A WDR36 Silent p.S664S 0.19 TCGA-G4-6628-01 5 110560304 110560304 G A CAMK4 Silent p.A41A 0.20 TCGA-G4-6628-01 5 112878201 112878201 G A YTHDC2 Splice_Site p.X499_splice 0.26 TCGA-G4-6628-01 5 114588933 114588933 C T PGGT1B Missense_Mutation p.A54T 0.36 deleterious(0) possibly_damaging(0.651) TCGA-G4-6628-01 5 115202451 115202451 G T AP3S1 Nonsense_Mutation p.G52* 0.17 TCGA-G4-6628-01 5 115298303 115298303 C A AQPEP 5'UTR 0.36 TCGA-G4-6628-01 5 122110827 122110827 T C SNX2 Missense_Mutation p.L10P 0.36 deleterious(0.01) possibly_damaging(0.659) TCGA-G4-6628-01 5 122154692 122154692 T C SNX2 Missense_Mutation p.Y396H 0.29 deleterious(0) probably_damaging(0.981) TCGA-G4-6628-01 5 1246174 1246174 C T SLC6A18 Missense_Mutation p.P623L 0.21 tolerated(0.15) unknown(0) TCGA-G4-6628-01 5 126734482 126734482 C T MEGF10 Silent p.G258G 0.28 TCGA-G4-6628-01 5 132151469 132151469 C A SOWAHA 3'UTR 0.21 TCGA-G4-6628-01 5 134195054 134195054 T - C5orf24 3'UTR 0.26 TCGA-G4-6628-01 5 138160291 138160291 C A CTNNA1 Missense_Mutation p.L221I 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-G4-6628-01 5 138728755 138728755 C - PROB1 Frame_Shift_Del p.A675Pfs*73 0.14 TCGA-G4-6628-01 5 13885131 13885131 G A DNAH5 Missense_Mutation p.R984C 0.30 possibly_damaging(0.689) TCGA-G4-6628-01 5 139941403 139941403 G A APBB3 Intron 0.22 TCGA-G4-6628-01 5 139948012 139948012 G A SLC35A4 3'UTR 0.27 TCGA-G4-6628-01 5 140012268 140012268 C G CD14 Missense_Mutation p.V101L 0.29 deleterious(0) benign(0.232) TCGA-G4-6628-01 5 140056309 140056309 C T HARS Missense_Mutation p.R375H 0.28 tolerated(0.28) benign(0.008) TCGA-G4-6628-01 5 140176838 140176838 C - PCDHA2 Frame_Shift_Del p.K766Rfs*29 0.24 TCGA-G4-6628-01 5 140202968 140202968 G A PCDHA5 Silent p.A536A 0.32 TCGA-G4-6628-01 5 140230244 140230244 C T PCDHA9 Missense_Mutation p.R722W 0.30 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-G4-6628-01 5 140248838 140248838 G A PCDHA11 Silent p.Q50Q 0.28 TCGA-G4-6628-01 5 140250190 140250190 G A PCDHA11 Missense_Mutation p.R501H 0.24 deleterious_low_confidence(0) benign(0.271) TCGA-G4-6628-01 5 140256084 140256084 G A PCDHA12 Missense_Mutation p.V343M 0.24 tolerated_low_confidence(0.06) possibly_damaging(0.635) TCGA-G4-6628-01 5 140263647 140263647 C T PCDHA13 Silent p.D598D 0.42 TCGA-G4-6628-01 5 140264048 140264048 G A PCDHA13 Missense_Mutation p.C732Y 0.17 tolerated_low_confidence(0.12) benign(0.013) TCGA-G4-6628-01 5 140306465 140306465 G A PCDHAC1 5'Flank 0.33 TCGA-G4-6628-01 5 140482226 140482226 G A PCDHB3 Missense_Mutation p.G665S 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.634) TCGA-G4-6628-01 5 140516633 140516633 G A PCDHB5 Silent p.A539A 0.35 TCGA-G4-6628-01 5 140554464 140554464 C T PCDHB7 Missense_Mutation p.S683L 0.09 tolerated_low_confidence(0.14) benign(0.004) TCGA-G4-6628-01 5 140557862 140557862 G A PCDHB8 Missense_Mutation p.A83T 0.08 deleterious_low_confidence(0) benign(0.218) TCGA-G4-6628-01 5 140603178 140603178 C T PCDHB14 Missense_Mutation p.S34F 0.27 tolerated_low_confidence(0.09) benign(0.303) TCGA-G4-6628-01 5 140754451 140754451 C T PCDHGA6 Silent p.T267T 0.25 TCGA-G4-6628-01 5 140767606 140767606 C T PCDHGB4 Missense_Mutation p.T52M 0.22 deleterious(0) possibly_damaging(0.532) TCGA-G4-6628-01 5 140802466 140802466 G A PCDHGA11 Missense_Mutation p.D558N 0.20 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-G4-6628-01 5 141039457 141039457 C T ARAP3 Silent p.T1052T 0.41 TCGA-G4-6628-01 5 141041335 141041335 C T ARAP3 Missense_Mutation p.R1012H 0.29 deleterious(0.01) benign(0.432) TCGA-G4-6628-01 5 141309146 141309146 G A KIAA0141 Splice_Site p.X138_splice 0.26 TCGA-G4-6628-01 5 145720020 145720020 G A POU4F3 3'UTR 0.31 TCGA-G4-6628-01 5 145883505 145883506 GA - TCERG1 Frame_Shift_Del p.E892Afs*17 0.29 TCGA-G4-6628-01 5 145886723 145886723 A - TCERG1 Frame_Shift_Del p.K957Rfs*17 0.26 TCGA-G4-6628-01 5 147830729 147830729 T G HTR4 3'UTR 0.21 TCGA-G4-6628-01 5 148206743 148206743 G A ADRB2 Missense_Mutation p.V117I 0.29 deleterious(0) probably_damaging(0.954) TCGA-G4-6628-01 5 148420241 148420241 C A SH3TC2 Splice_Site p.X244_splice 0.27 TCGA-G4-6628-01 5 149109980 149109980 G A PPARGC1B Silent p.T25T 0.23 TCGA-G4-6628-01 5 150027874 150027874 C T SYNPO Missense_Mutation p.H257Y 0.19 deleterious(0.01) possibly_damaging(0.713) TCGA-G4-6628-01 5 150030814 150030814 C T SYNPO 3'UTR 0.29 TCGA-G4-6628-01 5 150158496 150158496 C A AC010441.1 Missense_Mutation p.P122H 0.30 probably_damaging(0.95) TCGA-G4-6628-01 5 150885199 150885199 C T FAT2 Missense_Mutation p.R4326Q 0.30 benign(0.001) TCGA-G4-6628-01 5 150932779 150932779 C T FAT2 Missense_Mutation p.S1372N 0.19 possibly_damaging(0.579) TCGA-G4-6628-01 5 156376662 156376663 - T TIMD4 Frame_Shift_Ins p.E254Rfs*20 0.20 TCGA-G4-6628-01 5 157106913 157106913 T C C5orf52 Missense_Mutation p.F129S 0.25 deleterious(0) possibly_damaging(0.82) TCGA-G4-6628-01 5 158595987 158595987 C G RNF145 Missense_Mutation p.A369P 0.21 deleterious(0.02) possibly_damaging(0.665) TCGA-G4-6628-01 5 161128641 161128641 G A GABRA6 Silent p.S408S 0.19 TCGA-G4-6628-01 5 161324231 161324231 A T GABRA1 Missense_Mutation p.S392C 0.25 tolerated(0.24) probably_damaging(0.996) TCGA-G4-6628-01 5 170610222 170610222 A - RANBP17 Frame_Shift_Del p.N641Tfs*35 0.08 TCGA-G4-6628-01 5 171520778 171520778 G T STK10 Missense_Mutation p.P398T 0.27 tolerated(0.32) benign(0.146) TCGA-G4-6628-01 5 171765985 171765985 G A SH3PXD2B Silent p.R708R 0.16 TCGA-G4-6628-01 5 172195878 172195878 G A DUSP1 Nonsense_Mutation p.R331* 0.37 TCGA-G4-6628-01 5 172750287 172750287 C T STC2 Silent p.A147A 0.28 TCGA-G4-6628-01 5 175394217 175394217 C T THOC3 Nonsense_Mutation p.W107* 0.26 TCGA-G4-6628-01 5 176304977 176304977 A G UNC5A Missense_Mutation p.E573G 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-G4-6628-01 5 176733424 176733424 C T PRELID1 Silent p.G171G 0.28 TCGA-G4-6628-01 5 176734613 176734613 C T MXD3 Silent p.S199S 0.25 TCGA-G4-6628-01 5 176939180 176939180 G A DDX41 Missense_Mutation p.A550V 0.22 deleterious(0.04) possibly_damaging(0.487) TCGA-G4-6628-01 5 178555111 178555111 C T ADAMTS2 Silent p.P822P 0.32 TCGA-G4-6628-01 5 179079416 179079416 G A AC136604.1 3'Flank 0.24 TCGA-G4-6628-01 5 179192436 179192436 G A MAML1 Missense_Mutation p.R142Q 0.26 deleterious(0.04) benign(0.053) TCGA-G4-6628-01 5 179226065 179226065 C A MGAT4B Missense_Mutation p.E417D 0.28 tolerated(0.13) benign(0.099) TCGA-G4-6628-01 5 179326189 179326189 G A TBC1D9B Silent p.H116H 0.24 TCGA-G4-6628-01 5 179407200 179407200 G A RNF130 Missense_Mutation p.R232C 0.30 deleterious(0) probably_damaging(0.97) TCGA-G4-6628-01 5 179762896 179762896 G A GFPT2 Missense_Mutation p.T91M 0.32 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 5 180030150 180030150 G A FLT4 3'UTR 0.20 TCGA-G4-6628-01 5 180047231 180047231 G A FLT4 Silent p.C828C 0.17 TCGA-G4-6628-01 5 180335642 180335642 G A BTNL8 Missense_Mutation p.A36T 0.19 tolerated(0.14) benign(0.169) TCGA-G4-6628-01 5 180687617 180687617 C A TRIM52 Missense_Mutation p.E66D 0.30 tolerated(0.22) benign(0.029) TCGA-G4-6628-01 5 1879685 1879685 C T IRX4 Silent p.E223E 0.24 TCGA-G4-6628-01 5 24491928 24491928 C T CDH10 Missense_Mutation p.A545T 0.25 deleterious(0) possibly_damaging(0.75) TCGA-G4-6628-01 5 24505253 24505253 C A CDH10 Missense_Mutation p.W454L 0.18 deleterious(0.04) benign(0.038) TCGA-G4-6628-01 5 33951615 33951615 C A SLC45A2 Intron 0.30 TCGA-G4-6628-01 5 33989511 33989511 G A AMACR Missense_Mutation p.T279M 0.17 deleterious(0) probably_damaging(0.986) TCGA-G4-6628-01 5 34020806 34020806 G C C1QTNF3 Missense_Mutation p.A281G 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-G4-6628-01 5 34829848 34829849 AC - RAI14 Frame_Shift_Del p.Q941Tfs*22 0.26 TCGA-G4-6628-01 5 35955786 35955786 G A UGT3A1 Missense_Mutation p.T419I 0.22 tolerated(0.08) possibly_damaging(0.461) TCGA-G4-6628-01 5 36105223 36105223 C A LMBRD2 Missense_Mutation p.L658F 0.28 tolerated(0.1) benign(0.108) TCGA-G4-6628-01 5 36116580 36116580 C G LMBRD2 Missense_Mutation p.S473T 0.24 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 5 37022411 37022411 A G NIPBL Silent p.A1831A 0.34 TCGA-G4-6628-01 5 37231121 37231121 C T C5orf42 Silent p.T323T 0.33 TCGA-G4-6628-01 5 37348638 37348638 C T NUP155 Missense_Mutation p.A322T 0.32 tolerated(0.54) benign(0.004) TCGA-G4-6628-01 5 37815921 37815921 G A GDNF Silent p.Y173Y 0.30 TCGA-G4-6628-01 5 37834910 37834910 G A GDNF Missense_Mutation p.R14W 0.19 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-G4-6628-01 5 38933486 38933486 G A OSMR Silent p.P960P 0.27 TCGA-G4-6628-01 5 38946606 38946606 C T RICTOR Missense_Mutation p.D1455N 0.19 tolerated(0.2) benign(0.234) TCGA-G4-6628-01 5 44310575 44310575 C T FGF10 Missense_Mutation p.S128N 0.30 tolerated(0.05) probably_damaging(0.997) TCGA-G4-6628-01 5 5239908 5239909 - T ADAMTS16 Frame_Shift_Ins p.G799Wfs*25 0.17 TCGA-G4-6628-01 5 5303423 5303423 C T ADAMTS16 Silent p.G944G 0.24 TCGA-G4-6628-01 5 53814517 53814517 G T SNX18 Silent p.L245L 0.50 TCGA-G4-6628-01 5 54403700 54403700 G T GZMA Missense_Mutation p.K98N 0.27 tolerated(0.08) possibly_damaging(0.891) TCGA-G4-6628-01 5 54593113 54593113 C T DHX29 Silent p.Q125Q 0.29 TCGA-G4-6628-01 5 5462406 5462406 C T KIAA0947 Missense_Mutation p.P987S 0.35 tolerated(0.38) possibly_damaging(0.462) TCGA-G4-6628-01 5 54922301 54922302 - A SLC38A9 3'UTR 0.25 TCGA-G4-6628-01 5 55260018 55260018 C T IL6ST Missense_Mutation p.G205E 0.20 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 5 55472006 55472006 G A ANKRD55 Silent p.R95R 0.17 TCGA-G4-6628-01 5 56161183 56161183 G A MAP3K1 Missense_Mutation p.R351H 0.19 deleterious(0) possibly_damaging(0.724) TCGA-G4-6628-01 5 63256509 63256509 C T HTR1A Silent p.T346T 0.36 TCGA-G4-6628-01 5 63890636 63890636 G A RGS7BP Missense_Mutation p.S188N 0.26 tolerated_low_confidence(0.18) unknown(0) TCGA-G4-6628-01 5 64020272 64020272 T - SREK1IP1 Frame_Shift_Del p.K136Rfs*22 0.14 TCGA-G4-6628-01 5 65322212 65322212 A - ERBB2IP Frame_Shift_Del p.K369Nfs*2 0.14 TCGA-G4-6628-01 5 66478726 66478727 - A CD180 Frame_Shift_Ins p.A649Cfs*3 0.16 TCGA-G4-6628-01 5 677867 677867 G A TPPP Silent p.I103I 0.21 TCGA-G4-6628-01 5 68414386 68414386 G A SLC30A5 Silent p.A500A 0.24 TCGA-G4-6628-01 5 71756732 71756733 - T ZNF366 Frame_Shift_Ins p.F198Ifs*43 0.16 TCGA-G4-6628-01 5 74842935 74842935 G T POLK Nonsense_Mutation p.G30* 0.23 TCGA-G4-6628-01 5 75973148 75973148 A G IQGAP2 Silent p.S1211S 0.32 TCGA-G4-6628-01 5 76264832 76264832 G A CRHBP 3'UTR 0.39 TCGA-G4-6628-01 5 76358967 76358967 A - AGGF1 Frame_Shift_Del p.N681Tfs*29 0.30 TCGA-G4-6628-01 5 76627270 76627270 G A PDE8B Missense_Mutation p.A232T 0.23 tolerated(0.15) possibly_damaging(0.869) TCGA-G4-6628-01 5 78251156 78251156 C T ARSB Missense_Mutation p.S287N 0.21 tolerated(0.43) benign(0.002) TCGA-G4-6628-01 5 78293996 78293996 T - DMGDH Frame_Shift_Del p.N837Ifs*13 0.22 TCGA-G4-6628-01 5 78326804 78326804 G A DMGDH Missense_Mutation p.T512I 0.28 deleterious(0) probably_damaging(0.984) TCGA-G4-6628-01 5 78423642 78423642 G - BHMT Frame_Shift_Del p.V293Sfs*65 0.25 TCGA-G4-6628-01 5 7878344 7878344 G A MTRR Missense_Mutation p.R257H 0.20 tolerated(0.66) benign(0.004) TCGA-G4-6628-01 5 79032009 79032009 C T CMYA5 Missense_Mutation p.A2474V 0.26 probably_damaging(0.968) TCGA-G4-6628-01 5 80074545 80074545 A G MSH3 Silent p.K775K 0.09 TCGA-G4-6628-01 5 82779358 82779358 C G VCAN Missense_Mutation p.S7R 0.19 deleterious(0.04) benign(0.03) TCGA-G4-6628-01 5 83680254 83680254 G A EDIL3 5'UTR 0.44 TCGA-G4-6628-01 5 86672777 86672777 T C RASA1 Missense_Mutation p.I755T 0.18 tolerated(0.87) possibly_damaging(0.825) TCGA-G4-6628-01 5 86703939 86703939 C T CCNH Missense_Mutation p.G127R 0.13 deleterious(0.01) benign(0.263) TCGA-G4-6628-01 5 88119591 88119592 - T MEF2C Frame_Shift_Ins p.I6Dfs*9 0.21 TCGA-G4-6628-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.16 TCGA-G4-6628-01 5 89807919 89807919 C T POLR3G Missense_Mutation p.A212V 0.17 tolerated(0.09) unknown(0) TCGA-G4-6628-01 5 93856357 93856357 A T KIAA0825 Missense_Mutation p.I189N 0.19 deleterious(0) possibly_damaging(0.576) TCGA-G4-6628-01 5 95746658 95746658 C A PCSK1 Missense_Mutation p.W305C 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 6 107232003 107232003 C A MIR587 RNA 0.18 TCGA-G4-6628-01 6 107956599 107956599 A G SOBP Missense_Mutation p.S851G 0.31 tolerated(0.27) benign(0.002) TCGA-G4-6628-01 6 10874828 10874828 C T GCM2 Silent p.L307L 0.18 TCGA-G4-6628-01 6 109286215 109286215 C A ARMC2 Missense_Mutation p.T773N 0.20 tolerated(0.11) benign(0.047) TCGA-G4-6628-01 6 10959107 10959107 A G SYCP2L Missense_Mutation p.R752G 0.24 deleterious(0) probably_damaging(0.935) TCGA-G4-6628-01 6 109850222 109850222 T - AK9 Frame_Shift_Del p.R1209Gfs*39 0.16 TCGA-G4-6628-01 6 110098176 110098176 C T FIG4 Missense_Mutation p.T601I 0.25 tolerated(0.19) benign(0.004) TCGA-G4-6628-01 6 111587676 111587676 G A KIAA1919 Missense_Mutation p.G304D 0.06 deleterious(0) probably_damaging(0.93) TCGA-G4-6628-01 6 111628739 111628739 G T REV3L Missense_Mutation p.P3026H 0.20 tolerated(0.19) benign(0.001) TCGA-G4-6628-01 6 111696198 111696198 G A REV3L Silent p.P1120P 0.27 TCGA-G4-6628-01 6 111894120 111894120 A G TRAF3IP2 Missense_Mutation p.L423S 0.19 tolerated(0.12) benign(0.219) TCGA-G4-6628-01 6 112021416 112021416 T C FYN Silent p.P251P 0.30 TCGA-G4-6628-01 6 116987882 116987882 G A ZUFSP Silent p.F158F 0.23 TCGA-G4-6628-01 6 117704648 117704648 C T ROS1 Silent p.T776T 0.24 TCGA-G4-6628-01 6 118015322 118015322 G A NUS1 Missense_Mutation p.D224N 0.16 tolerated(0.77) benign(0.005) TCGA-G4-6628-01 6 119136529 119136529 C T MCM9 Missense_Mutation p.A964T 0.19 tolerated_low_confidence(0.14) possibly_damaging(0.489) TCGA-G4-6628-01 6 119669713 119669713 G - MAN1A1 Frame_Shift_Del p.P173Rfs*30 0.34 TCGA-G4-6628-01 6 121401858 121401859 - C TBC1D32 3'Flank 0.22 TCGA-G4-6628-01 6 122733804 122733804 T C HSF2 Silent p.H75H 0.33 TCGA-G4-6628-01 6 123869690 123869690 C T TRDN Silent p.T100T 0.18 TCGA-G4-6628-01 6 127516992 127516993 - A RSPO3 Frame_Shift_Ins p.P223Tfs*2 0.19 TCGA-G4-6628-01 6 127611345 127611345 C A ECHDC1 Missense_Mutation p.R198L 0.27 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 6 129663556 129663556 G T LAMA2 Missense_Mutation p.K1460N 0.32 tolerated(0.11) benign(0.297) TCGA-G4-6628-01 6 13053604 13053604 A C PHACTR1 Missense_Mutation p.E86D 0.22 tolerated(0.08) benign(0.388) TCGA-G4-6628-01 6 13053754 13053754 G A PHACTR1 Silent p.T136T 0.22 TCGA-G4-6628-01 6 131914203 131914203 G A MED23 Missense_Mutation p.A1114V 0.26 deleterious(0.01) probably_damaging(0.965) TCGA-G4-6628-01 6 13206135 13206135 G - PHACTR1 Frame_Shift_Del p.P254Qfs*59 0.32 TCGA-G4-6628-01 6 134638745 134638745 G A SGK1 5'UTR 0.33 TCGA-G4-6628-01 6 135787175 135787175 C A AHI1 Nonsense_Mutation p.G176* 0.25 TCGA-G4-6628-01 6 13639981 13639981 G A RANBP9 Missense_Mutation p.R447C 0.35 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 6 136913340 136913340 C T MAP3K5 Missense_Mutation p.V1066M 0.33 deleterious(0.02) possibly_damaging(0.628) TCGA-G4-6628-01 6 137330455 137330455 G A IL20RA Missense_Mutation p.T193M 0.20 tolerated(0.08) benign(0.094) TCGA-G4-6628-01 6 137815030 137815030 C T OLIG3 Missense_Mutation p.R93H 0.29 deleterious(0) possibly_damaging(0.776) TCGA-G4-6628-01 6 138656168 138656168 C T KIAA1244 Missense_Mutation p.P2062L 0.39 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-G4-6628-01 6 143823206 143823206 G T FUCA2 Silent p.P339P 0.26 TCGA-G4-6628-01 6 144184419 144184419 G A LTV1 Missense_Mutation p.R438H 0.37 deleterious(0) probably_damaging(0.993) TCGA-G4-6628-01 6 144508280 144508280 C T STX11 Silent p.V172V 0.25 TCGA-G4-6628-01 6 147123814 147123815 - A ADGB Intron 0.18 TCGA-G4-6628-01 6 151672422 151672422 G A AKAP12 Missense_Mutation p.V966I 0.19 tolerated(0.49) benign(0.005) TCGA-G4-6628-01 6 152461183 152461183 C A SYNE1 Missense_Mutation p.A8454S 0.26 benign(0.026) TCGA-G4-6628-01 6 152462375 152462375 G T SYNE1 Silent p.G8403G 0.16 TCGA-G4-6628-01 6 152603057 152603057 C T SYNE1 Missense_Mutation p.R6089H 0.31 possibly_damaging(0.614) TCGA-G4-6628-01 6 152688429 152688429 G A SYNE1 Missense_Mutation p.A3299V 0.28 benign(0.028) TCGA-G4-6628-01 6 152712474 152712474 C T SYNE1 Missense_Mutation p.A2648T 0.32 benign(0.011) TCGA-G4-6628-01 6 157511191 157511191 C T ARID1B Missense_Mutation p.H1237Y 0.36 possibly_damaging(0.758) TCGA-G4-6628-01 6 158049445 158049446 - A ZDHHC14 Frame_Shift_Ins p.Y211Ifs*36 0.21 TCGA-G4-6628-01 6 158454577 158454577 C T SYNJ2 Silent p.R192R 0.32 TCGA-G4-6628-01 6 158923481 158923481 C T TULP4 Missense_Mutation p.A929V 0.26 deleterious_low_confidence(0) benign(0.297) TCGA-G4-6628-01 6 159129410 159129410 G A SYTL3 Missense_Mutation p.R168H 0.23 tolerated(0.26) benign(0) TCGA-G4-6628-01 6 160169261 160169261 C T WTAP Silent p.S104S 0.33 TCGA-G4-6628-01 6 160218323 160218323 C T MRPL18 Nonsense_Mutation p.R82* 0.14 TCGA-G4-6628-01 6 160221325 160221325 C T PNLDC1 5'UTR 0.21 TCGA-G4-6628-01 6 161536209 161536209 G T MAP3K4 Nonsense_Mutation p.G1561* 0.15 TCGA-G4-6628-01 6 165862451 165862451 C A PDE10A Nonsense_Mutation p.G121* 0.17 TCGA-G4-6628-01 6 167755137 167755137 C T TTLL2 Silent p.L583L 0.27 TCGA-G4-6628-01 6 169617776 169617776 C T THBS2 3'UTR 0.47 TCGA-G4-6628-01 6 18130960 18130960 C T TPMT Missense_Mutation p.R226Q 0.21 deleterious(0.05) benign(0.027) TCGA-G4-6628-01 6 20152858 20152858 C T MBOAT1 Missense_Mutation p.G81D 0.25 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 6 25435768 25435768 G A LRRC16A Missense_Mutation p.V103M 0.29 deleterious(0.01) possibly_damaging(0.844) TCGA-G4-6628-01 6 25726438 25726438 G A HIST1H2AA Silent p.G106G 0.51 TCGA-G4-6628-01 6 26157150 26157150 G A HIST1H1E Missense_Mutation p.A178T 0.13 tolerated(0.24) unknown(0) TCGA-G4-6628-01 6 26465447 26465447 G A BTN2A1 Silent p.V249V 0.24 TCGA-G4-6628-01 6 26545515 26545515 G T HMGN4 Silent p.R27R 0.27 TCGA-G4-6628-01 6 26598264 26598264 G A ABT1 Missense_Mutation p.A122T 0.28 deleterious(0) probably_damaging(0.99) TCGA-G4-6628-01 6 28200588 28200588 C T ZSCAN9 Nonsense_Mutation p.Q324* 0.27 TCGA-G4-6628-01 6 28213159 28213159 T - ZKSCAN4 Frame_Shift_Del p.N458Mfs*81 0.22 TCGA-G4-6628-01 6 28294305 28294305 G A ZSCAN31 Missense_Mutation p.R287W 0.16 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 6 29274776 29274776 G A OR14J1 Missense_Mutation p.A104T 0.30 tolerated(0.38) possibly_damaging(0.573) TCGA-G4-6628-01 6 29364834 29364834 C A OR12D2 Missense_Mutation p.L120I 0.35 deleterious(0) benign(0.001) TCGA-G4-6628-01 6 30131687 30131687 G T TRIM15 Missense_Mutation p.G76C 0.36 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 6 30554045 30554045 C - ABCF1 Frame_Shift_Del p.P618Hfs*13 0.33 TCGA-G4-6628-01 6 30672683 30672683 G T MDC1 Missense_Mutation p.P1426H 0.29 deleterious(0.05) possibly_damaging(0.514) TCGA-G4-6628-01 6 30955832 30955832 G A MUC21 Missense_Mutation p.G521D 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-G4-6628-01 6 31085085 31085085 C T CDSN Missense_Mutation p.A103T 0.31 tolerated_low_confidence(0.08) unknown(0) TCGA-G4-6628-01 6 31130391 31130391 G A TCF19 Missense_Mutation p.G312D 0.24 tolerated(0.66) probably_damaging(0.989) TCGA-G4-6628-01 6 31132912 31132912 T C POU5F1 Missense_Mutation p.E270G 0.24 deleterious(0) benign(0.052) TCGA-G4-6628-01 6 31593800 31593800 T - PRRC2A Frame_Shift_Del p.R284Vfs*14 0.24 TCGA-G4-6628-01 6 31746763 31746763 T C VARS Missense_Mutation p.Q1236R 0.23 tolerated(0.8) benign(0.039) TCGA-G4-6628-01 6 32016340 32016340 C A TNXB 5'Flank 0.29 TCGA-G4-6628-01 6 32137188 32137188 C T AGPAT1 Silent p.T239T 0.33 TCGA-G4-6628-01 6 32149174 32149174 T C AGER Missense_Mutation p.I358V 0.29 tolerated_low_confidence(0.35) benign(0.001) TCGA-G4-6628-01 6 32335729 32335729 T C C6orf10 Missense_Mutation p.R47G 0.20 tolerated(1) benign(0.002) TCGA-G4-6628-01 6 32713178 32713178 A G HLA-DQA2 Missense_Mutation p.T109A 0.35 tolerated(0.17) benign(0.014) TCGA-G4-6628-01 6 32906580 32906580 G A HLA-DMB Missense_Mutation p.A73V 0.27 deleterious(0) probably_damaging(0.964) TCGA-G4-6628-01 6 33036940 33036940 C A HLA-DPA1 Missense_Mutation p.G162C 0.31 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 6 33170162 33170162 G A SLC39A7 Missense_Mutation p.A253T 0.34 tolerated(0.52) benign(0.022) TCGA-G4-6628-01 6 33639960 33639960 C T ITPR3 Silent p.D961D 0.19 TCGA-G4-6628-01 6 33648339 33648339 G A ITPR3 Missense_Mutation p.S1453N 0.30 tolerated(0.78) benign(0) TCGA-G4-6628-01 6 348957 348957 G A DUSP22 Intron 0.17 TCGA-G4-6628-01 6 34949585 34949585 C A ANKS1A Missense_Mutation p.P185H 0.27 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 6 35437143 35437144 - C RPL10A Intron 0.23 TCGA-G4-6628-01 6 35773412 35773412 C A LHFPL5 5'UTR 0.29 TCGA-G4-6628-01 6 35927239 35927239 T C SLC26A8 Missense_Mutation p.R621G 0.23 deleterious(0) probably_damaging(0.967) TCGA-G4-6628-01 6 36287354 36287354 A - C6orf222 Frame_Shift_Del p.Y568Tfs*12 0.14 TCGA-G4-6628-01 6 36339221 36339221 G T ETV7 Missense_Mutation p.P184T 0.28 tolerated(0.39) benign(0.021) TCGA-G4-6628-01 6 36485551 36485551 A G STK38 Missense_Mutation p.F153L 0.20 deleterious(0.01) possibly_damaging(0.803) TCGA-G4-6628-01 6 36990047 36990047 G A FGD2 Silent p.P453P 0.12 TCGA-G4-6628-01 6 37441374 37441374 G - CMTR1 Frame_Shift_Del 0.19 TCGA-G4-6628-01 6 38810477 38810478 - T DNAH8 Frame_Shift_Ins p.L1333Ffs*8 0.17 TCGA-G4-6628-01 6 39158621 39158621 G - KCNK5 3'UTR 0.35 TCGA-G4-6628-01 6 39851668 39851668 G T DAAM2 Intron 0.19 TCGA-G4-6628-01 6 39873501 39873501 C G MOCS1 3'UTR 0.28 TCGA-G4-6628-01 6 41000723 41000723 G A UNC5CL Silent p.N283N 0.21 TCGA-G4-6628-01 6 41130918 41130918 G A TREM2 5'Flank 0.23 TCGA-G4-6628-01 6 41757059 41757059 G A TOMM6 Missense_Mutation p.G73E 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.903) TCGA-G4-6628-01 6 42832626 42832627 - A GLTSCR1L Frame_Shift_Ins p.T897Nfs*11 0.29 TCGA-G4-6628-01 6 43266166 43266166 C T SLC22A7 Silent p.L24L 0.28 TCGA-G4-6628-01 6 43400516 43400516 C T ABCC10 Silent p.H266H 0.42 TCGA-G4-6628-01 6 43565525 43565525 G A POLH Missense_Mutation p.V195M 0.22 tolerated(0.09) benign(0.309) TCGA-G4-6628-01 6 43745336 43745336 C T VEGFA Silent p.C263C 0.32 TCGA-G4-6628-01 6 44320581 44320581 T C SPATS1 Silent p.P86P 0.32 TCGA-G4-6628-01 6 46977438 46977438 G T GPR110 Missense_Mutation p.P578H 0.21 deleterious(0) probably_damaging(0.974) TCGA-G4-6628-01 6 4952553 4952553 C T CDYL Silent p.G462G 0.24 TCGA-G4-6628-01 6 5086747 5086747 C T PPP1R3G Missense_Mutation p.A343V 0.33 tolerated(0.16) possibly_damaging(0.532) TCGA-G4-6628-01 6 52271353 52271353 A - PAQR8 3'UTR 0.21 TCGA-G4-6628-01 6 52334208 52334208 A - EFHC1 Frame_Shift_Del p.D408Tfs*7 0.18 TCGA-G4-6628-01 6 53363686 53363686 A G GCLC Silent p.T594T 0.24 TCGA-G4-6628-01 6 54066953 54066954 - A MLIP Frame_Shift_Ins p.E348Rfs*6 0.21 TCGA-G4-6628-01 6 56479184 56479184 C T DST Silent p.K1139K 0.27 TCGA-G4-6628-01 6 56480901 56480901 G A DST Intron 0.31 TCGA-G4-6628-01 6 56495152 56495152 T - DST Frame_Shift_Del p.N854Tfs*9 0.19 TCGA-G4-6628-01 6 56566742 56566742 G A DST Missense_Mutation p.R89C 0.17 probably_damaging(0.996) TCGA-G4-6628-01 6 5999208 5999208 C A NRN1 3'UTR 0.32 TCGA-G4-6628-01 6 64394097 64394097 A - PHF3 Frame_Shift_Del p.A161Hfs*13 0.20 TCGA-G4-6628-01 6 66205225 66205225 G A EYS Nonsense_Mutation p.Q27* 0.16 TCGA-G4-6628-01 6 70040414 70040414 G A BAI3 Missense_Mutation p.E1018K 0.26 deleterious(0) probably_damaging(0.995) TCGA-G4-6628-01 6 70859777 70859777 C T COL19A1 Missense_Mutation p.P655L 0.15 deleterious(0.01) probably_damaging(0.967) TCGA-G4-6628-01 6 71266501 71266501 G A FAM135A Missense_Mutation p.R1426H 0.26 deleterious(0.01) probably_damaging(1) TCGA-G4-6628-01 6 7231916 7231916 C T RREB1 Missense_Mutation p.P1195L 0.36 deleterious(0) probably_damaging(0.929) TCGA-G4-6628-01 6 72943513 72943513 G A RIMS1 Nonsense_Mutation p.W572* 0.28 TCGA-G4-6628-01 6 73933531 73933531 C T KHDC1L Silent p.Q109Q 0.20 TCGA-G4-6628-01 6 74176063 74176063 C T MTO1 Missense_Mutation p.R117C 0.21 deleterious(0.04) benign(0.008) TCGA-G4-6628-01 6 75823357 75823357 C T COL12A1 Missense_Mutation p.D2601N 0.29 probably_damaging(0.995) TCGA-G4-6628-01 6 75839858 75839858 C T COL12A1 Silent p.Q2053Q 0.27 TCGA-G4-6628-01 6 7585972 7585972 G A DSP Missense_Mutation p.R2826H 0.14 probably_damaging(0.976) TCGA-G4-6628-01 6 7891942 7891942 G A TXNDC5 Missense_Mutation p.P215L 0.22 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 6 79668299 79668299 C T PHIP Missense_Mutation p.M1225I 0.22 tolerated(0.36) probably_damaging(0.968) TCGA-G4-6628-01 6 80383444 80383444 C - SH3BGRL2 Frame_Shift_Del p.P55Rfs*41 0.25 TCGA-G4-6628-01 6 83810481 83810481 C T DOPEY1 Missense_Mutation p.R66C 0.28 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 6 84862351 84862351 T - KIAA1009 Frame_Shift_Del p.N1181Mfs*3 0.19 TCGA-G4-6628-01 6 84925098 84925098 A - KIAA1009 Frame_Shift_Del p.F135Lfs*8 0.20 TCGA-G4-6628-01 6 85446613 85446613 G - TBX18 Frame_Shift_Del p.K539Nfs*25 0.11 TCGA-G4-6628-01 6 89864474 89864474 A - PM20D2 Frame_Shift_Del p.N257Mfs*4 0.19 TCGA-G4-6628-01 6 90354804 90354804 G A MDN1 Missense_Mutation p.A5511V 0.31 unknown(0) TCGA-G4-6628-01 6 90564552 90564552 C A CASP8AP2 RNA 0.28 TCGA-G4-6628-01 6 96655193 96655193 T C FUT9 3'UTR 0.21 TCGA-G4-6628-01 6 99365358 99365358 G T FBXL4 Silent p.A250A 0.30 TCGA-G4-6628-01 7 100304799 100304799 G A POP7 Missense_Mutation p.D116N 0.27 deleterious(0.04) benign(0.015) TCGA-G4-6628-01 7 100463596 100463596 C T SLC12A9 Missense_Mutation p.A705V 0.28 tolerated(0.31) benign(0.017) TCGA-G4-6628-01 7 100730789 100730789 C T TRIM56 Missense_Mutation p.P66S 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-G4-6628-01 7 100866805 100866805 C T ZNHIT1 Nonsense_Mutation p.R81* 0.24 TCGA-G4-6628-01 7 100958415 100958415 C T RABL5 Silent p.%3D 0.25 TCGA-G4-6628-01 7 101928447 101928447 G T SH2B2 5'UTR 0.24 TCGA-G4-6628-01 7 102114859 102114859 G A POLR2J Silent p.N89N 0.13 TCGA-G4-6628-01 7 107234540 107234540 T - BCAP29 Frame_Shift_Del p.W114Gfs*2 0.27 TCGA-G4-6628-01 7 107743616 107743616 G A LAMB4 Silent p.S351S 0.27 TCGA-G4-6628-01 7 110764636 110764637 - A LRRN3 Frame_Shift_Ins p.C606Mfs*12 0.23 TCGA-G4-6628-01 7 110765260 110765260 T - LRRN3 3'UTR 0.25 TCGA-G4-6628-01 7 116399507 116399507 T A MET Missense_Mutation p.V794D 0.21 deleterious(0.03) possibly_damaging(0.636) TCGA-G4-6628-01 7 11676545 11676545 G A THSD7A Silent p.G78G 0.18 TCGA-G4-6628-01 7 120969421 120969421 C T WNT16 Silent p.Y25Y 0.18 TCGA-G4-6628-01 7 122787213 122787213 G A SLC13A1 Missense_Mutation p.T271I 0.26 tolerated(0.15) benign(0.013) TCGA-G4-6628-01 7 127014491 127014491 G A ZNF800 Missense_Mutation p.A300V 0.29 deleterious(0.03) probably_damaging(0.979) TCGA-G4-6628-01 7 127669037 127669037 G A LRRC4 Missense_Mutation p.R553W 0.22 deleterious(0) probably_damaging(0.952) TCGA-G4-6628-01 7 127991189 127991189 G A PRRT4 Silent p.C807C 0.32 TCGA-G4-6628-01 7 128119505 128119505 A G METTL2B Missense_Mutation p.S166G 0.09 tolerated(0.36) benign(0.008) TCGA-G4-6628-01 7 128407566 128407566 C T CALU Nonsense_Mutation p.R242* 0.19 TCGA-G4-6628-01 7 128587464 128587464 G A IRF5 Missense_Mutation p.G221D 0.32 tolerated(0.54) benign(0.246) TCGA-G4-6628-01 7 129098272 129098272 C T STRIP2 Missense_Mutation p.P419S 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-G4-6628-01 7 130418038 130418038 G A KLF14 Missense_Mutation p.R275C 0.09 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 7 131864593 131864593 C T PLXNA4 Missense_Mutation p.A1243T 0.32 tolerated(0.07) benign(0.041) TCGA-G4-6628-01 7 133160210 133160210 A - EXOC4 Frame_Shift_Del p.N439Ifs*15 0.29 TCGA-G4-6628-01 7 134635258 134635258 C A CALD1 Missense_Mutation p.S643Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 7 134889147 134889147 T C WDR91 Missense_Mutation p.Q255R 0.31 tolerated(0.64) benign(0.051) TCGA-G4-6628-01 7 137282593 137282593 C T DGKI Silent p.T437T 0.19 TCGA-G4-6628-01 7 138203957 138203957 C T TRIM24 Nonsense_Mutation p.R219* 0.24 TCGA-G4-6628-01 7 138552861 138552861 G A KIAA1549 Missense_Mutation p.R1597C 0.39 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 7 138604003 138604003 A - KIAA1549 Frame_Shift_Del p.F123Lfs*23 0.23 TCGA-G4-6628-01 7 139030311 139030311 G A LUC7L2 Missense_Mutation p.C68Y 0.25 deleterious_low_confidence(0.01) benign(0.233) TCGA-G4-6628-01 7 139734092 139734092 T - PARP12 Frame_Shift_Del p.K455Rfs*14 0.20 TCGA-G4-6628-01 7 13975473 13975473 G - ETV1 Frame_Shift_Del p.T139Hfs*116 0.26 TCGA-G4-6628-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.18 deleterious(0) probably_damaging(0.967) TCGA-G4-6628-01 7 140710260 140710260 G A MRPS33 Silent p.Y58Y 0.29 TCGA-G4-6628-01 7 142836674 142836674 C A PIP Missense_Mutation p.A127D 0.25 tolerated(0.63) benign(0.001) TCGA-G4-6628-01 7 143454229 143454229 G A CTAGE6 Nonsense_Mutation p.Q175* 0.26 TCGA-G4-6628-01 7 143747588 143747589 CT - OR2A5 Frame_Shift_Del p.L32Vfs*37 0.19 TCGA-G4-6628-01 7 148080919 148080919 G A CNTNAP2 Silent p.P1218P 0.34 TCGA-G4-6628-01 7 149171720 149171720 G A ZNF746 Missense_Mutation p.R565W 0.12 deleterious(0) probably_damaging(0.988) TCGA-G4-6628-01 7 149255891 149255891 C T ZNF767 RNA 0.34 TCGA-G4-6628-01 7 149416674 149416674 C T KRBA1 5'UTR 0.22 TCGA-G4-6628-01 7 149480732 149480732 C T SSPO RNA 0.20 TCGA-G4-6628-01 7 149486854 149486854 G A SSPO RNA 0.28 TCGA-G4-6628-01 7 150164098 150164098 C T GIMAP8 Silent p.G104G 0.32 TCGA-G4-6628-01 7 151836761 151836761 T C KMT2C Missense_Mutation p.Q4820R 0.23 possibly_damaging(0.794) TCGA-G4-6628-01 7 154564646 154564646 G A DPP6 Missense_Mutation p.R377Q 0.12 tolerated(0.07) possibly_damaging(0.816) TCGA-G4-6628-01 7 154862767 154862767 C T HTR5A-AS1 Missense_Mutation p.A83T 0.30 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-G4-6628-01 7 154863243 154863243 C T HTR5A Missense_Mutation p.P212S 0.21 deleterious(0) possibly_damaging(0.901) TCGA-G4-6628-01 7 155099990 155099990 A C INSIG1 3'UTR 0.29 TCGA-G4-6628-01 7 156468409 156468409 G A RNF32 Missense_Mutation p.R235H 0.28 deleterious(0.01) probably_damaging(0.915) TCGA-G4-6628-01 7 15725809 15725809 G A MEOX2 Silent p.H73H 0.15 TCGA-G4-6628-01 7 157475548 157475548 C T PTPRN2 Missense_Mutation p.A624T 0.18 tolerated(0.05) possibly_damaging(0.826) TCGA-G4-6628-01 7 158439207 158439207 G A NCAPG2 Missense_Mutation p.P1042S 0.18 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 7 158664012 158664012 G A WDR60 Silent p.E83E 0.23 TCGA-G4-6628-01 7 1855851 1855851 G A MAD1L1 Missense_Mutation p.S671L 0.18 tolerated(0.07) possibly_damaging(0.509) TCGA-G4-6628-01 7 1886999 1886999 G A AC110781.3 Missense_Mutation p.G82R 0.27 benign(0.001) TCGA-G4-6628-01 7 1887399 1887399 C T AC110781.3 Missense_Mutation p.A215V 0.27 benign(0) TCGA-G4-6628-01 7 18875117 18875117 C T HDAC9 Nonsense_Mutation p.Q832* 0.29 TCGA-G4-6628-01 7 20198752 20198752 T - MACC1 Frame_Shift_Del p.N411Tfs*23 0.19 TCGA-G4-6628-01 7 21939648 21939648 C T DNAH11 Missense_Mutation p.R4412C 0.21 benign(0) TCGA-G4-6628-01 7 24325016 24325016 C T NPY Nonsense_Mutation p.R53* 0.44 TCGA-G4-6628-01 7 2473576 2473576 T - CHST12 3'UTR 0.18 TCGA-G4-6628-01 7 26236225 26236225 A G HNRNPA2B1 Missense_Mutation p.S189P 0.34 tolerated(0.08) unknown(0) TCGA-G4-6628-01 7 27147513 27147513 C T HOXA3 3'UTR 0.40 TCGA-G4-6628-01 7 2748716 2748716 C T AMZ1 Silent p.G203G 0.26 TCGA-G4-6628-01 7 2959191 2959191 C A CARD11 Silent p.S775S 0.22 TCGA-G4-6628-01 7 30486591 30486591 C T NOD1 Silent p.T787T 0.29 TCGA-G4-6628-01 7 30818131 30818131 G T FAM188B Missense_Mutation p.K49N 0.19 tolerated(0.51) benign(0.013) TCGA-G4-6628-01 7 30890137 30890137 C T FAM188B Missense_Mutation p.R505W 0.26 deleterious(0) probably_damaging(0.997) TCGA-G4-6628-01 7 32910229 32910229 C T KBTBD2 Silent p.L200L 0.33 TCGA-G4-6628-01 7 34009963 34009963 G T BMPER Missense_Mutation p.G142V 0.32 tolerated(0.12) benign(0.002) TCGA-G4-6628-01 7 35244109 35244109 C - TBX20 Frame_Shift_Del p.D326Mfs*40 0.23 TCGA-G4-6628-01 7 37025582 37025582 C T ELMO1 Intron 0.19 TCGA-G4-6628-01 7 38502644 38502644 C T AMPH Silent p.P273P 0.24 TCGA-G4-6628-01 7 39379560 39379560 T G POU6F2 Missense_Mutation p.S277R 0.16 tolerated_low_confidence(0.18) unknown(0) TCGA-G4-6628-01 7 42005950 42005950 G A GLI3 Silent p.S907S 0.22 TCGA-G4-6628-01 7 42007293 42007293 C T GLI3 Missense_Mutation p.V778I 0.25 tolerated(0.24) benign(0.013) TCGA-G4-6628-01 7 42961452 42961452 C T PSMA2 Intron 0.21 TCGA-G4-6628-01 7 43679256 43679257 - A COA1 Frame_Shift_Ins p.L122Ffs*20 0.18 TCGA-G4-6628-01 7 45009366 45009366 G A MYO1G Nonsense_Mutation p.R481* 0.28 TCGA-G4-6628-01 7 45115669 45115669 G - CCM2 3'UTR 0.25 TCGA-G4-6628-01 7 45141517 45141517 G - TBRG4 Frame_Shift_Del p.L492Cfs*9 0.37 TCGA-G4-6628-01 7 45143721 45143721 G A TBRG4 Missense_Mutation p.P348S 0.35 deleterious(0.01) possibly_damaging(0.45) TCGA-G4-6628-01 7 48075891 48075891 G A C7orf57 5'UTR 0.17 TCGA-G4-6628-01 7 4830211 4830211 G A AP5Z1 Missense_Mutation p.V643I 0.24 deleterious(0.01) benign(0.016) TCGA-G4-6628-01 7 4998636 4998636 G - MMD2 Frame_Shift_Del p.R5Gfs*14 0.20 TCGA-G4-6628-01 7 5036256 5036256 C T RNF216P1 RNA 0.29 TCGA-G4-6628-01 7 5327557 5327557 C T SLC29A4 Missense_Mutation p.A37V 0.27 tolerated(0.25) benign(0) TCGA-G4-6628-01 7 5545194 5545194 A G FBXL18 Missense_Mutation p.L29P 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-G4-6628-01 7 5567716 5567716 G A ACTB Silent p.G301G 0.27 TCGA-G4-6628-01 7 5965347 5965347 A - RSPH10B 3'Flank 0.16 TCGA-G4-6628-01 7 63981917 63981917 G T ZNF680 Silent p.P405P 0.29 TCGA-G4-6628-01 7 66413579 66413579 C T TMEM248 Missense_Mutation p.A165V 0.27 tolerated(0.22) benign(0.216) TCGA-G4-6628-01 7 66563595 66563595 C T TYW1 Silent p.L484L 0.26 TCGA-G4-6628-01 7 6803613 6803613 G A RSPH10B2 Missense_Mutation p.G152S 0.18 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 7 72985208 72985208 G A TBL2 Missense_Mutation p.R325C 0.26 deleterious(0.05) benign(0.003) TCGA-G4-6628-01 7 73279446 73279446 C A WBSCR28 Missense_Mutation p.L66M 0.33 tolerated(0.07) benign(0.348) TCGA-G4-6628-01 7 73522238 73522238 A C LIMK1 Missense_Mutation p.K368T 0.16 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 7 8167618 8167618 C T ICA1 Silent p.E405E 0.26 TCGA-G4-6628-01 7 82585744 82585744 G A PCLO Missense_Mutation p.P1509S 0.30 unknown(0) TCGA-G4-6628-01 7 87459246 87459246 G A RUNDC3B Silent p.T441T 0.23 TCGA-G4-6628-01 7 8791262 8791262 G A NXPH1 Missense_Mutation p.V227I 0.23 tolerated(0.15) possibly_damaging(0.498) TCGA-G4-6628-01 7 91726244 91726244 C T AKAP9 Missense_Mutation p.A3324V 0.16 probably_damaging(0.999) TCGA-G4-6628-01 7 92147475 92147475 G A PEX1 Missense_Mutation p.T151M 0.20 deleterious(0) probably_damaging(0.993) TCGA-G4-6628-01 7 92195334 92195334 T - FAM133B Frame_Shift_Del p.A218Qfs*52 0.22 TCGA-G4-6628-01 7 92244490 92244490 C T CDK6 Silent p.P315P 0.21 TCGA-G4-6628-01 7 92844875 92844875 T - HEPACAM2 Frame_Shift_Del p.N185Mfs*25 0.18 TCGA-G4-6628-01 7 94879377 94879378 - A PPP1R9A Frame_Shift_Ins p.T738Nfs*11 0.20 TCGA-G4-6628-01 7 94993286 94993286 A G PON3 Missense_Mutation p.M195T 0.21 tolerated(0.73) benign(0.337) TCGA-G4-6628-01 7 95214922 95214922 T C PDK4 3'UTR 0.28 TCGA-G4-6628-01 7 96810661 96810661 A G ACN9 3'UTR 0.23 TCGA-G4-6628-01 7 97846777 97846777 G T TECPR1 Silent p.T1141T 0.33 TCGA-G4-6628-01 7 98030134 98030134 G A BAIAP2L1 Missense_Mutation p.L11F 0.17 deleterious(0.02) possibly_damaging(0.621) TCGA-G4-6628-01 7 98551051 98551051 C A TRRAP Missense_Mutation p.L1902M 0.37 probably_damaging(0.996) TCGA-G4-6628-01 7 99264262 99264262 C T CYP3A5 Silent p.R161R 0.17 TCGA-G4-6628-01 7 99917249 99917249 C A SPDYE3 Missense_Mutation p.L470M 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-G4-6628-01 8 104340646 104340646 T C FZD6 Splice_Site p.X514_splice 0.29 TCGA-G4-6628-01 8 10532213 10532213 C T C8orf74 Nonsense_Mutation p.Q36* 0.15 TCGA-G4-6628-01 8 105509695 105509695 G A LRP12 Missense_Mutation p.A362V 0.13 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 8 10583341 10583341 G A SOX7 Silent p.S410S 0.26 TCGA-G4-6628-01 8 106813641 106813641 A G ZFPM2 Missense_Mutation p.K444R 0.40 tolerated(0.09) possibly_damaging(0.905) TCGA-G4-6628-01 8 106813965 106813965 A - ZFPM2 Frame_Shift_Del p.E552Gfs*4 0.17 TCGA-G4-6628-01 8 109247235 109247236 - A EIF3E Frame_Shift_Ins p.R155* 0.20 TCGA-G4-6628-01 8 109252219 109252219 A G EIF3E Silent p.D97D 0.17 TCGA-G4-6628-01 8 110980473 110980473 T C KCNV1 Silent p.E449E 0.25 TCGA-G4-6628-01 8 113655755 113655755 G A CSMD3 Intron 0.35 TCGA-G4-6628-01 8 11614478 11614478 C T GATA4 Silent p.S344S 0.26 TCGA-G4-6628-01 8 118159190 118159190 T C SLC30A8 Intron 0.35 TCGA-G4-6628-01 8 120429176 120429176 G A NOV Missense_Mutation p.A93T 0.21 tolerated(0.1) benign(0.187) TCGA-G4-6628-01 8 124993041 124993042 - C FER1L6 Frame_Shift_Ins p.E470Gfs*8 0.26 TCGA-G4-6628-01 8 125015516 125015516 G T FER1L6 Silent p.V543V 0.09 TCGA-G4-6628-01 8 125074137 125074137 C T FER1L6 Silent p.C1064C 0.37 TCGA-G4-6628-01 8 125988730 125988730 A G ZNF572 Missense_Mutation p.T74A 0.26 tolerated(0.79) benign(0.002) TCGA-G4-6628-01 8 131916265 131916265 G A ADCY8 Missense_Mutation p.T555M 0.28 deleterious(0) probably_damaging(0.943) TCGA-G4-6628-01 8 132051722 132051722 C T ADCY8 Silent p.P286P 0.33 TCGA-G4-6628-01 8 132051742 132051742 C T ADCY8 Missense_Mutation p.A280T 0.24 deleterious(0.01) possibly_damaging(0.77) TCGA-G4-6628-01 8 13424622 13424622 C A C8orf48 Missense_Mutation p.S41Y 0.21 deleterious(0.02) benign(0.246) TCGA-G4-6628-01 8 134262746 134262746 C T NDRG1 Missense_Mutation p.R212H 0.23 deleterious(0.02) probably_damaging(0.933) TCGA-G4-6628-01 8 135613899 135613899 A G ZFAT Missense_Mutation p.V688A 0.32 tolerated(0.78) benign(0) TCGA-G4-6628-01 8 135614804 135614804 C A ZFAT Missense_Mutation p.E386D 0.29 tolerated(0.37) benign(0.025) TCGA-G4-6628-01 8 136659306 136659306 C T KHDRBS3 Silent p.D340D 0.20 TCGA-G4-6628-01 8 139263113 139263113 G T FAM135B Silent p.A171A 0.17 TCGA-G4-6628-01 8 140998986 140998986 C T TRAPPC9 Missense_Mutation p.V1018I 0.27 tolerated(0.23) benign(0.049) TCGA-G4-6628-01 8 142228706 142228706 G - SLC45A4 Frame_Shift_Del p.R294Afs*34 0.25 TCGA-G4-6628-01 8 142489363 142489363 C T MROH5 3'UTR 0.35 TCGA-G4-6628-01 8 143599549 143599549 C T BAI1 Silent p.G956G 0.17 TCGA-G4-6628-01 8 144662212 144662214 CAG - EEF1D In_Frame_Del p.L625del 0.26 TCGA-G4-6628-01 8 144688646 144688646 G A PYCRL Silent p.G192G 0.18 TCGA-G4-6628-01 8 144776265 144776265 G A ZNF707 Silent p.T227T 0.29 TCGA-G4-6628-01 8 144893319 144893319 T C SCRIB Missense_Mutation p.N368S 0.11 probably_damaging(0.998) TCGA-G4-6628-01 8 144895141 144895141 G A SCRIB Intron 0.34 TCGA-G4-6628-01 8 144899551 144899551 C T PUF60 Missense_Mutation p.G365D 0.30 tolerated(0.08) possibly_damaging(0.72) TCGA-G4-6628-01 8 144921061 144921061 C T NRBP2 Silent p.A246A 0.19 TCGA-G4-6628-01 8 144945516 144945516 G A EPPK1 Missense_Mutation p.R636W 0.31 probably_damaging(0.998) TCGA-G4-6628-01 8 144946700 144946700 G A EPPK1 Missense_Mutation p.A241V 0.33 possibly_damaging(0.453) TCGA-G4-6628-01 8 144993346 144993346 T C PLEC Missense_Mutation p.K3685R 0.32 benign(0.032) TCGA-G4-6628-01 8 144994045 144994045 C T PLEC Missense_Mutation p.S3452N 0.27 possibly_damaging(0.694) TCGA-G4-6628-01 8 145154661 145154661 G A SHARPIN Missense_Mutation p.R202C 0.31 deleterious(0) possibly_damaging(0.772) TCGA-G4-6628-01 8 145541960 145541960 C T DGAT1 Missense_Mutation p.V214I 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-G4-6628-01 8 145617461 145617461 G A ADCK5 Missense_Mutation p.A395T 0.30 tolerated(0.59) benign(0.004) TCGA-G4-6628-01 8 145729720 145729720 G A GPT Silent p.A11A 0.21 TCGA-G4-6628-01 8 145736795 145736795 A T RECQL4 3'UTR 0.20 TCGA-G4-6628-01 8 145745194 145745194 G A LRRC14 Missense_Mutation p.E29K 0.32 tolerated(0.05) possibly_damaging(0.662) TCGA-G4-6628-01 8 145999433 145999433 G A ZNF34 Missense_Mutation p.H301Y 0.21 deleterious(0) benign(0.248) TCGA-G4-6628-01 8 146033600 146033600 C T ZNF517 Silent p.F433F 0.24 TCGA-G4-6628-01 8 15517147 15517147 G A TUSC3 Silent p.T186T 0.19 TCGA-G4-6628-01 8 17092286 17092286 C T CNOT7 Missense_Mutation p.R186Q 0.21 tolerated(0.16) benign(0.011) TCGA-G4-6628-01 8 17400942 17400942 C T SLC7A2 Missense_Mutation p.R72C 0.16 deleterious(0) probably_damaging(0.929) TCGA-G4-6628-01 8 19315956 19315956 G A CSGALNACT1 Nonsense_Mutation p.Q278* 0.31 TCGA-G4-6628-01 8 20004823 20004823 G A SLC18A1 Silent p.V470V 0.27 TCGA-G4-6628-01 8 2007344 2007344 G A MYOM2 Missense_Mutation p.V211I 0.23 tolerated(0.18) probably_damaging(0.999) TCGA-G4-6628-01 8 2054079 2054079 C A MYOM2 Missense_Mutation p.L928M 0.09 tolerated(0.23) probably_damaging(1) TCGA-G4-6628-01 8 21900438 21900438 C T FGF17 5'UTR 0.19 TCGA-G4-6628-01 8 21960354 21960354 G A FAM160B2 Missense_Mutation p.C715Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 8 23058018 23058018 C A TNFRSF10A Missense_Mutation p.G267C 0.15 deleterious(0.02) benign(0.127) TCGA-G4-6628-01 8 23306298 23306298 G A ENTPD4 Nonsense_Mutation p.R55* 0.20 TCGA-G4-6628-01 8 24771822 24771822 G T NEFM Missense_Mutation p.Q172H 0.35 deleterious(0.05) unknown(0) TCGA-G4-6628-01 8 24813515 24813515 C T CTD-2168K21.2 5'Flank 0.27 TCGA-G4-6628-01 8 25149615 25149615 T C DOCK5 Missense_Mutation p.S133P 0.19 deleterious(0) possibly_damaging(0.707) TCGA-G4-6628-01 8 25159865 25159865 C T DOCK5 Missense_Mutation p.R291W 0.33 deleterious(0) probably_damaging(0.992) TCGA-G4-6628-01 8 25301823 25301823 C A KCTD9 Nonsense_Mutation p.G67* 0.21 TCGA-G4-6628-01 8 27288488 27288488 C T PTK2B Silent p.A255A 0.21 TCGA-G4-6628-01 8 27309228 27309228 C A PTK2B Intron 0.27 TCGA-G4-6628-01 8 27987172 27987172 C T ELP3 Silent p.D257D 0.33 TCGA-G4-6628-01 8 28929142 28929142 G A KIF13B Missense_Mutation p.P1738L 0.21 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 8 3057246 3057246 G A CSMD1 Silent p.F1728F 0.19 TCGA-G4-6628-01 8 30706209 30706209 T C TEX15 Missense_Mutation p.N109D 0.19 tolerated(0.17) benign(0.024) TCGA-G4-6628-01 8 30889725 30889725 G A PURG Missense_Mutation p.R192W 0.18 deleterious(0.02) probably_damaging(1) TCGA-G4-6628-01 8 31014961 31014961 C - WRN Frame_Shift_Del p.D1302Ifs*7 0.22 TCGA-G4-6628-01 8 32621277 32621277 C T NRG1 Missense_Mutation p.A432V 0.22 deleterious(0) probably_damaging(0.986) TCGA-G4-6628-01 8 3263665 3263665 C T CSMD1 Missense_Mutation p.S717N 0.23 probably_damaging(0.998) TCGA-G4-6628-01 8 35606107 35606107 T C UNC5D Missense_Mutation p.M610T 0.26 deleterious(0.05) benign(0.079) TCGA-G4-6628-01 8 37707186 37707187 - C BRF2 Frame_Shift_Ins p.V39Gfs*28 0.18 TCGA-G4-6628-01 8 37823236 37823236 G A ADRB3 Missense_Mutation p.P251L 0.25 tolerated(0.06) possibly_damaging(0.621) TCGA-G4-6628-01 8 38067994 38067995 - A BAG4 Frame_Shift_Ins p.G456Rfs*70 0.19 TCGA-G4-6628-01 8 39843250 39843250 T - IDO2 Intron 0.38 TCGA-G4-6628-01 8 401397 401397 C T FBXO25 Nonsense_Mutation p.R202* 0.21 TCGA-G4-6628-01 8 42705974 42705974 G A RNF170 3'Flank 0.35 TCGA-G4-6628-01 8 48885587 48885587 C T MCM4 Missense_Mutation p.P700L 0.37 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 8 49637253 49637253 G A EFCAB1 3'UTR 0.22 TCGA-G4-6628-01 8 53853113 53853113 G A NPBWR1 Missense_Mutation p.V216M 0.25 tolerated(0.09) possibly_damaging(0.876) TCGA-G4-6628-01 8 55542041 55542041 G A RP1 Missense_Mutation p.V1867I 0.18 tolerated(0.06) benign(0.03) TCGA-G4-6628-01 8 59058764 59058764 C T FAM110B 5'UTR 0.24 TCGA-G4-6628-01 8 59500221 59500221 T - NSMAF Frame_Shift_Del p.R782Dfs*16 0.16 TCGA-G4-6628-01 8 59547771 59547771 C A NSMAF Missense_Mutation p.G135C 0.26 tolerated(0.06) benign(0.012) TCGA-G4-6628-01 8 61729019 61729019 C T CHD7 Nonsense_Mutation p.R858* 0.25 TCGA-G4-6628-01 8 69005932 69005932 G A PREX2 Silent p.G781G 0.18 TCGA-G4-6628-01 8 71593240 71593240 T C XKR9 5'UTR 0.17 TCGA-G4-6628-01 8 73848537 73848537 G T KCNB2 Missense_Mutation p.R316M 0.33 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 8 73921376 73921379 TCTT - TERF1 Frame_Shift_Del p.L86Afs*29 0.29 TCGA-G4-6628-01 8 74464131 74464131 A T STAU2 Intron 0.24 TCGA-G4-6628-01 8 77620197 77620197 G A ZFHX4 Missense_Mutation p.A1003T 0.11 possibly_damaging(0.695) TCGA-G4-6628-01 8 77766586 77766586 A G ZFHX4 Missense_Mutation p.I2477V 0.27 benign(0.048) TCGA-G4-6628-01 8 77775763 77775763 T C ZFHX4 Silent p.A3271A 0.29 TCGA-G4-6628-01 8 8560803 8560803 G - CLDN23 3'UTR 0.24 TCGA-G4-6628-01 8 8561363 8561363 T C CLDN23 3'UTR 0.28 TCGA-G4-6628-01 8 86057677 86057678 - A LRRCC1 Frame_Shift_Ins p.T1013Nfs*7 0.26 TCGA-G4-6628-01 8 8749720 8749720 G A MFHAS1 Silent p.N283N 0.31 TCGA-G4-6628-01 8 92139365 92139365 G A LRRC69 Silent p.T120T 0.17 TCGA-G4-6628-01 8 95894412 95894412 G T CCNE2 Missense_Mutation p.P350H 0.27 deleterious(0.05) benign(0.421) TCGA-G4-6628-01 8 96167876 96167876 T - PLEKHF2 3'UTR 0.24 TCGA-G4-6628-01 8 96167955 96167956 - T PLEKHF2 3'UTR 0.20 TCGA-G4-6628-01 9 100456021 100456021 C T XPA Missense_Mutation p.A65T 0.25 tolerated(0.78) possibly_damaging(0.483) TCGA-G4-6628-01 9 101065644 101065644 T C GABBR2 Missense_Mutation p.Q764R 0.29 tolerated(0.58) benign(0.058) TCGA-G4-6628-01 9 101125025 101125025 C T GABBR2 Missense_Mutation p.R622Q 0.25 tolerated(0.48) benign(0.249) TCGA-G4-6628-01 9 102595079 102595079 A G NR4A3 Missense_Mutation p.S365G 0.22 deleterious(0.04) benign(0.098) TCGA-G4-6628-01 9 103035212 103035212 C T INVS Silent p.H546H 0.22 TCGA-G4-6628-01 9 104187819 104187819 C A ALDOB Missense_Mutation p.A239S 0.30 tolerated(1) benign(0.002) TCGA-G4-6628-01 9 104449403 104449403 T C GRIN3A Missense_Mutation p.N260S 0.32 tolerated(0.16) benign(0.288) TCGA-G4-6628-01 9 110250484 110250484 T A KLF4 Missense_Mutation p.D64V 0.30 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-G4-6628-01 9 111903838 111903838 T C FRRS1L Missense_Mutation p.D216G 0.22 deleterious(0.03) possibly_damaging(0.825) TCGA-G4-6628-01 9 114366050 114366050 G T PTGR1 5'Flank 0.21 TCGA-G4-6628-01 9 114886580 114886580 G A SUSD1 Silent p.C281C 0.28 TCGA-G4-6628-01 9 115593013 115593013 C T SNX30 Silent p.P156P 0.22 TCGA-G4-6628-01 9 116269826 116269826 G - RGS3 Frame_Shift_Del p.G450Afs*25 0.23 TCGA-G4-6628-01 9 116854636 116854636 G - KIF12 Frame_Shift_Del p.P460Rfs*66 0.19 TCGA-G4-6628-01 9 117093141 117093141 C T ORM2 Silent p.Y109Y 0.27 TCGA-G4-6628-01 9 117396048 117396048 G A C9orf91 Missense_Mutation p.A159T 0.23 tolerated(0.18) possibly_damaging(0.539) TCGA-G4-6628-01 9 117853 117853 C T FOXD4 Silent p.P89P 0.25 TCGA-G4-6628-01 9 118950085 118950085 C T PAPPA Silent p.R356R 0.38 TCGA-G4-6628-01 9 119461982 119461983 - T TRIM32 Frame_Shift_Ins p.*654Y 0.14 TCGA-G4-6628-01 9 119463093 119463093 C T TRIM32 3'UTR 0.25 TCGA-G4-6628-01 9 120475841 120475841 G A TLR4 Missense_Mutation p.A479T 0.16 deleterious(0) probably_damaging(0.969) TCGA-G4-6628-01 9 123007308 123007308 C T MIR147A RNA 0.23 TCGA-G4-6628-01 9 123165271 123165271 G T CDK5RAP2 Missense_Mutation p.P1707Q 0.37 tolerated(0.13) probably_damaging(0.993) TCGA-G4-6628-01 9 123739160 123739160 A - C5 Frame_Shift_Del p.W1228Gfs*21 0.20 TCGA-G4-6628-01 9 123933805 123933805 G A CNTRL Silent p.E2132E 0.29 TCGA-G4-6628-01 9 124921974 124921974 C - NDUFA8 5'UTR 0.30 TCGA-G4-6628-01 9 125239885 125239885 A - OR1J1 Frame_Shift_Del p.F107Lfs*4 0.16 TCGA-G4-6628-01 9 125512461 125512461 A G OR1L6 Missense_Mutation p.D112G 0.26 deleterious(0) possibly_damaging(0.624) TCGA-G4-6628-01 9 126794890 126794890 G A LHX2 Silent p.L375L 0.23 TCGA-G4-6628-01 9 127174748 127174748 G A PSMB7 Missense_Mutation p.A93V 0.23 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 9 129458673 129458673 C T LMX1B Silent p.R388R 0.28 TCGA-G4-6628-01 9 129851206 129851206 G - ANGPTL2 3'UTR 0.11 TCGA-G4-6628-01 9 130268955 130268955 C A FAM129B 3'UTR 0.56 TCGA-G4-6628-01 9 130570890 130570890 G A FPGS Silent p.P292P 0.16 TCGA-G4-6628-01 9 130700135 130700135 C T DPM2 5'UTR 0.21 TCGA-G4-6628-01 9 130707704 130707704 G A FAM102A Missense_Mutation p.P287S 0.32 tolerated(0.3) benign(0.039) TCGA-G4-6628-01 9 130941239 130941239 G A CIZ1 Missense_Mutation p.P416L 0.28 tolerated_low_confidence(0.09) benign(0.028) TCGA-G4-6628-01 9 131396553 131396553 G A WDR34 Missense_Mutation p.R442C 0.23 tolerated(0.12) benign(0.016) TCGA-G4-6628-01 9 131455237 131455237 G A SET Missense_Mutation p.E170K 0.23 tolerated(0.18) benign(0.229) TCGA-G4-6628-01 9 131584852 131584852 C T ENDOG Missense_Mutation p.A286V 0.40 tolerated(0.07) benign(0.077) TCGA-G4-6628-01 9 13168377 13168377 C T MPDZ Missense_Mutation p.G1081D 0.23 tolerated(0.05) probably_damaging(0.995) TCGA-G4-6628-01 9 131702665 131702665 G A PHYHD1 Silent p.T151T 0.19 TCGA-G4-6628-01 9 131703981 131703981 C T PHYHD1 Silent p.N281N 0.17 TCGA-G4-6628-01 9 131741588 131741588 G A NUP188 Silent p.P417P 0.14 TCGA-G4-6628-01 9 132502053 132502053 G A PTGES Missense_Mutation p.A99V 0.27 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 9 133730388 133730388 C T ABL1 Missense_Mutation p.R171C 0.21 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 9 133928346 133928346 C A LAMC3 Missense_Mutation p.P645T 0.34 tolerated(0.31) benign(0.077) TCGA-G4-6628-01 9 133954631 133954631 A G LAMC3 Silent p.R1291R 0.09 TCGA-G4-6628-01 9 134183530 134183530 C T PPAPDC3 Silent p.C224C 0.35 TCGA-G4-6628-01 9 134394257 134394257 C T POMT1 Missense_Mutation p.R489W 0.47 deleterious(0.04) benign(0.045) TCGA-G4-6628-01 9 134465323 134465323 G A RAPGEF1 Silent p.R771R 0.20 TCGA-G4-6628-01 9 135114495 135114495 C T NTNG2 Silent p.C353C 0.18 TCGA-G4-6628-01 9 135779842 135779842 C T TSC1 Splice_Site p.X666_splice 0.29 TCGA-G4-6628-01 9 135786444 135786446 AGG - TSC1 In_Frame_Del p.P362del 0.22 TCGA-G4-6628-01 9 135947131 135947131 C T CEL Missense_Mutation p.P751S 0.28 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-G4-6628-01 9 135961685 135961685 C T CELP RNA 0.22 TCGA-G4-6628-01 9 136522400 136522400 G - DBH Intron 0.20 TCGA-G4-6628-01 9 136804319 136804319 C T VAV2 Missense_Mutation p.R76H 0.21 deleterious(0) probably_damaging(0.998) TCGA-G4-6628-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.29 TCGA-G4-6628-01 9 138714806 138714817 TAAGGCCCGGGG - CAMSAP1 In_Frame_Del p.P564_L567del 0.28 TCGA-G4-6628-01 9 138903824 138903824 G A NACC2 Silent p.N434N 0.15 TCGA-G4-6628-01 9 138908221 138908221 C T NACC2 Missense_Mutation p.R314H 0.34 deleterious(0.04) benign(0.246) TCGA-G4-6628-01 9 139243183 139243183 G A GPSM1 Silent p.A414A 0.22 TCGA-G4-6628-01 9 139324860 139324860 G A INPP5E Silent p.R557R 0.24 TCGA-G4-6628-01 9 139412253 139412253 G A NOTCH1 Silent p.D464D 0.27 TCGA-G4-6628-01 9 139413065 139413065 G A NOTCH1 Silent p.C359C 0.28 TCGA-G4-6628-01 9 139910137 139910137 C T ABCA2 Silent p.K1168K 0.29 TCGA-G4-6628-01 9 139911723 139911723 G T ABCA2 Nonsense_Mutation p.Y826* 0.12 TCGA-G4-6628-01 9 140001849 140001849 G A MAN1B1 Missense_Mutation p.V572M 0.22 deleterious(0.03) benign(0.222) TCGA-G4-6628-01 9 140062014 140062014 G A GRIN1 Intron 0.21 TCGA-G4-6628-01 9 140087030 140087030 C T TPRN Silent p.E613E 0.30 TCGA-G4-6628-01 9 14788936 14788936 G A FREM1 Silent p.T1386T 0.29 TCGA-G4-6628-01 9 15779009 15779009 A G CCDC171 Missense_Mutation p.Q981R 0.23 tolerated(0.07) probably_damaging(0.997) TCGA-G4-6628-01 9 18770654 18770654 C T ADAMTSL1 Missense_Mutation p.R758C 0.29 deleterious(0.02) probably_damaging(0.982) TCGA-G4-6628-01 9 21187022 21187023 - CTG IFNA4 In_Frame_Ins p.A169dup 0.21 TCGA-G4-6628-01 9 21201700 21201700 C T IFNA7 Missense_Mutation p.M155I 0.12 deleterious(0.02) benign(0) TCGA-G4-6628-01 9 21201701 21201701 A G IFNA7 Missense_Mutation p.M155T 0.12 tolerated(0.24) benign(0) TCGA-G4-6628-01 9 21201960 21201960 G T IFNA7 Missense_Mutation p.H69N 0.12 tolerated(0.65) benign(0.001) TCGA-G4-6628-01 9 21334756 21334756 C T KLHL9 Missense_Mutation p.V35M 0.29 tolerated(0.07) benign(0.321) TCGA-G4-6628-01 9 21967609 21967609 T C C9orf53 3'UTR 0.22 TCGA-G4-6628-01 9 27168543 27168543 G A TEK Missense_Mutation p.V139M 0.25 deleterious(0.01) probably_damaging(0.931) TCGA-G4-6628-01 9 32481336 32481336 A G DDX58 Splice_Site p.X546_splice 0.24 TCGA-G4-6628-01 9 332435 332435 G - DOCK8 Frame_Shift_Del p.C361Lfs*23 0.17 TCGA-G4-6628-01 9 34972518 34972518 G T KIAA1045 Missense_Mutation p.C185F 0.22 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 9 35042959 35042959 G T C9orf131 Missense_Mutation p.E111D 0.26 tolerated(0.42) benign(0.004) TCGA-G4-6628-01 9 35057072 35057072 A G VCP 3'UTR 0.11 TCGA-G4-6628-01 9 35698483 35698483 G A TLN1 Missense_Mutation p.A2403V 0.26 deleterious(0) possibly_damaging(0.798) TCGA-G4-6628-01 9 35749781 35749781 G - RGP1 Frame_Shift_Del p.G11Vfs*13 0.16 TCGA-G4-6628-01 9 35792656 35792656 C T NPR2 Missense_Mutation p.A84V 0.33 deleterious(0.05) possibly_damaging(0.461) TCGA-G4-6628-01 9 35792702 35792702 C T NPR2 Silent p.P99P 0.27 TCGA-G4-6628-01 9 37020768 37020768 A C PAX5 Missense_Mutation p.V26G 0.38 deleterious(0) probably_damaging(0.975) TCGA-G4-6628-01 9 37522871 37522871 C A FBXO10 Silent p.V627V 0.17 TCGA-G4-6628-01 9 37592564 37592564 C A TOMM5 5'UTR 0.26 TCGA-G4-6628-01 9 38397518 38397518 C - ALDH1B1 3'UTR 0.20 TCGA-G4-6628-01 9 39178167 39178167 A C CNTNAP3 Missense_Mutation p.F243L 0.24 tolerated(1) benign(0.004) TCGA-G4-6628-01 9 71114182 71114182 T G PGM5 Missense_Mutation p.F507V 0.24 deleterious(0.04) possibly_damaging(0.772) TCGA-G4-6628-01 9 71152336 71152337 - CT TMEM252 Frame_Shift_Ins p.A118Rfs*35 0.27 TCGA-G4-6628-01 9 71397628 71397628 G A FAM122A 3'UTR 0.29 TCGA-G4-6628-01 9 71628979 71628979 G A PRKACG Silent p.T10T 0.26 TCGA-G4-6628-01 9 71842988 71842988 C T TJP2 Missense_Mutation p.P502S 0.21 tolerated(0.53) benign(0.002) TCGA-G4-6628-01 9 72374829 72374829 G A PTAR1 Missense_Mutation p.A9V 0.26 deleterious_low_confidence(0.03) benign(0.143) TCGA-G4-6628-01 9 72962599 72962599 T A SMC5 Missense_Mutation p.V912D 0.22 tolerated(0.59) benign(0.005) TCGA-G4-6628-01 9 73167889 73167889 T A TRPM3 Missense_Mutation p.T1137S 0.22 deleterious(0.04) benign(0.228) TCGA-G4-6628-01 9 74587677 74587677 C T C9orf85 Silent p.C131C 0.28 TCGA-G4-6628-01 9 77354294 77354294 G T TRPM6 Silent p.P1853P 0.20 TCGA-G4-6628-01 9 79117758 79117758 T C GCNT1 Missense_Mutation p.V154A 0.29 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 9 79118113 79118113 C T GCNT1 Silent p.V272V 0.18 TCGA-G4-6628-01 9 85926865 85926865 A - FRMD3 Frame_Shift_Del p.L237* 0.15 TCGA-G4-6628-01 9 88938115 88938115 G C ZCCHC6 Missense_Mutation p.D850E 0.31 tolerated(1) benign(0.001) TCGA-G4-6628-01 9 90219980 90219980 C T DAPK1 Silent p.R58R 0.24 TCGA-G4-6628-01 9 90533893 90533893 C T SPATA31C1 Intron 0.24 TCGA-G4-6628-01 9 90533953 90533953 T G SPATA31C1 Intron 0.16 TCGA-G4-6628-01 9 90534117 90534117 G - SPATA31C1 Intron 0.23 TCGA-G4-6628-01 9 91628244 91628244 A T SHC3 3'UTR 0.35 TCGA-G4-6628-01 9 96060247 96060247 C - WNK2 Frame_Shift_Del p.T1980Lfs*12 0.16 TCGA-G4-6628-01 9 96318708 96318708 C T FAM120A Silent p.F773F 0.27 TCGA-G4-6628-01 9 97897691 97897691 C A FANCC Missense_Mutation p.K260N 0.26 tolerated(0.16) probably_damaging(0.985) TCGA-G4-6628-01 9 990555 990555 C A DMRT3 Silent p.I323I 0.14 TCGA-G4-6628-01 X 100669102 100669102 C A HNRNPH2 3'UTR 0.16 TCGA-G4-6628-01 X 100808891 100808891 C A ARMCX1 Silent p.S326S 0.50 TCGA-G4-6628-01 X 101096495 101096495 G A NXF5 Silent p.Y92Y 0.48 TCGA-G4-6628-01 X 101972052 101972053 - A GPRASP2 Frame_Shift_Ins p.L755Tfs*15 0.32 TCGA-G4-6628-01 X 105937542 105937543 - A RNF128 Frame_Shift_Ins p.I79Nfs*10 0.30 TCGA-G4-6628-01 X 106844016 106844016 C T FRMPD3 Missense_Mutation p.A949V 0.47 deleterious_low_confidence(0.02) benign(0.004) TCGA-G4-6628-01 X 111078265 111078265 G A TRPC5 Missense_Mutation p.H594Y 0.61 deleterious(0.01) probably_damaging(0.995) TCGA-G4-6628-01 X 114425687 114425687 C T RBMXL3 Silent p.D561D 0.61 TCGA-G4-6628-01 X 11776438 11776438 G A MSL3 Missense_Mutation p.C19Y 0.52 deleterious(0) benign(0.214) TCGA-G4-6628-01 X 117880935 117880935 C T IL13RA1 Missense_Mutation p.R83C 0.50 tolerated(0.07) benign(0.38) TCGA-G4-6628-01 X 117959491 117959491 G A ZCCHC12 Missense_Mutation p.R95H 0.57 tolerated(0.12) probably_damaging(0.975) TCGA-G4-6628-01 X 119068481 119068481 T C NKAP Missense_Mutation p.K238R 0.52 tolerated(0.1) unknown(0) TCGA-G4-6628-01 X 119760539 119760540 - T C1GALT1C1 Frame_Shift_Ins p.D162Gfs*18 0.36 TCGA-G4-6628-01 X 129349856 129349856 G A ZNF280C Missense_Mutation p.R583C 0.52 deleterious(0.04) possibly_damaging(0.608) TCGA-G4-6628-01 X 130407781 130407781 C T IGSF1 Missense_Mutation p.V1339I 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.638) TCGA-G4-6628-01 X 133379798 133379799 - T CCDC160 Frame_Shift_Ins p.*326L 0.41 TCGA-G4-6628-01 X 135750184 135750184 A G ARHGEF6 3'UTR 0.70 TCGA-G4-6628-01 X 13587905 13587905 C T EGFL6 5'UTR 0.58 TCGA-G4-6628-01 X 13756998 13756998 A - OFD1 Frame_Shift_Del p.I117Sfs*28 0.35 TCGA-G4-6628-01 X 139586670 139586670 G A SOX3 Nonsense_Mutation p.R186* 0.44 TCGA-G4-6628-01 X 140271291 140271291 C T LDOC1 5'UTR 0.56 TCGA-G4-6628-01 X 146280559 146280559 G A MIR513B 3'Flank 0.39 TCGA-G4-6628-01 X 147014110 147014110 G A FMR1 Missense_Mutation p.G266E 0.46 deleterious(0) probably_damaging(1) TCGA-G4-6628-01 X 147030282 147030282 G A FMR1 Missense_Mutation p.R606H 0.51 tolerated_low_confidence(0.07) probably_damaging(0.927) TCGA-G4-6628-01 X 148584697 148584698 - T IDS Intron 0.20 TCGA-G4-6628-01 X 14933849 14933849 G - MOSPD2 Frame_Shift_Del p.G384Vfs*6 0.33 TCGA-G4-6628-01 X 149671754 149671754 C T MAMLD1 Intron 0.54 TCGA-G4-6628-01 X 149671781 149671781 G A MAMLD1 Intron 0.48 TCGA-G4-6628-01 X 150844537 150844537 C G PASD1 Nonsense_Mutation p.Y748* 0.51 TCGA-G4-6628-01 X 152228220 152228220 T C PNMA3 3'UTR 0.50 TCGA-G4-6628-01 X 152815060 152815060 C T ATP2B3 Missense_Mutation p.R482C 0.40 deleterious(0) probably_damaging(0.999) TCGA-G4-6628-01 X 152935920 152935921 - G PNCK Frame_Shift_Ins p.K425Qfs*? 0.42 TCGA-G4-6628-01 X 15333633 15333633 A - ASB11 Frame_Shift_Del p.L32Wfs*4 0.35 TCGA-G4-6628-01 X 153588826 153588826 C T FLNA Missense_Mutation p.E1113K 0.53 tolerated(0.08) probably_damaging(0.992) TCGA-G4-6628-01 X 155006180 155006180 C A SPRY3 3'UTR 0.22 TCGA-G4-6628-01 X 17080578 17080578 T C REPS2 Missense_Mutation p.W378R 0.50 tolerated(0.63) benign(0.001) TCGA-G4-6628-01 X 17745772 17745772 G A NHS Silent p.P1161P 0.51 TCGA-G4-6628-01 X 17818712 17818712 G A RAI2 Silent p.S473S 0.39 TCGA-G4-6628-01 X 18665359 18665359 T C RS1 Missense_Mutation p.Y93C 0.44 deleterious(0.02) benign(0.11) TCGA-G4-6628-01 X 19026118 19026119 - A GPR64 Frame_Shift_Ins p.E516* 0.51 TCGA-G4-6628-01 X 19032191 19032191 C T GPR64 Missense_Mutation p.D238N 0.67 tolerated_low_confidence(0.06) possibly_damaging(0.786) TCGA-G4-6628-01 X 19935364 19935365 AG - CXorf23 3'UTR 0.43 TCGA-G4-6628-01 X 21627405 21627405 C T CNKSR2 Missense_Mutation p.P788S 0.54 tolerated(0.09) possibly_damaging(0.607) TCGA-G4-6628-01 X 24228950 24228950 T C ZFX Silent p.L625L 0.44 TCGA-G4-6628-01 X 30872961 30872961 T C TAB3 Missense_Mutation p.N274S 0.44 tolerated(0.87) benign(0.001) TCGA-G4-6628-01 X 3240592 3240592 T C MXRA5 Missense_Mutation p.K1045R 0.61 tolerated(0.37) benign(0.001) TCGA-G4-6628-01 X 32663098 32663098 G A DMD Nonsense_Mutation p.Q378* 0.45 TCGA-G4-6628-01 X 32834669 32834669 C T DMD Missense_Mutation p.R149H 0.55 possibly_damaging(0.766) TCGA-G4-6628-01 X 34961481 34961481 A C FAM47B Missense_Mutation p.E178A 0.52 deleterious(0.02) probably_damaging(0.982) TCGA-G4-6628-01 X 38268250 38268250 C T OTC Missense_Mutation p.A280V 0.50 tolerated(0.05) benign(0.006) TCGA-G4-6628-01 X 40988350 40988350 C A USP9X Missense_Mutation p.P65H 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-G4-6628-01 X 41029361 41029361 G A USP9X Missense_Mutation p.R917Q 0.46 deleterious(0.01) probably_damaging(0.945) TCGA-G4-6628-01 X 41333651 41333651 C A NYX Silent p.T315T 0.82 TCGA-G4-6628-01 X 47326894 47326894 C A ZNF41 5'UTR 0.55 TCGA-G4-6628-01 X 49114804 49114804 C T FOXP3 Silent p.G53G 0.58 TCGA-G4-6628-01 X 53458487 53458487 C T HSD17B10 Silent p.L217L 0.73 TCGA-G4-6628-01 X 54837500 54837500 C T MAGED2 Missense_Mutation p.L262F 0.61 tolerated(0.11) probably_damaging(0.988) TCGA-G4-6628-01 X 55478852 55478852 C T MAGEH1 Silent p.A15A 0.50 TCGA-G4-6628-01 X 55514507 55514507 T C USP51 Missense_Mutation p.K289R 0.56 tolerated(0.52) benign(0.017) TCGA-G4-6628-01 X 57621215 57621215 T - ZXDB 3'UTR 0.32 TCGA-G4-6628-01 X 57936947 57936947 A - ZXDA 5'UTR 0.62 TCGA-G4-6628-01 X 595467 595467 A T SHOX Missense_Mutation p.E131V 0.19 deleterious(0) probably_damaging(0.971) TCGA-G4-6628-01 X 64958389 64958389 C A MSN Silent p.A418A 0.38 TCGA-G4-6628-01 X 65819503 65819503 G A EDA2R Silent p.C260C 0.54 TCGA-G4-6628-01 X 68060163 68060170 CCAAGGTG - EFNB1 Frame_Shift_Del p.S236Cfs*80 0.32 TCGA-G4-6628-01 X 68382240 68382242 TCA - PJA1 In_Frame_Del p.D282del 0.43 TCGA-G4-6628-01 X 74519682 74519682 C - UPRT Frame_Shift_Del p.P227Qfs*10 0.30 TCGA-G4-6628-01 X 7811237 7811237 T C VCX 5'UTR 0.45 TCGA-G4-6628-01 X 84502475 84502475 T A ZNF711 Intron 0.50 TCGA-G4-6628-01 X 85631835 85631835 G A DACH2 Missense_Mutation p.R166K 0.38 tolerated_low_confidence(0.41) benign(0.036) TCGA-G4-6628-01 X 91090524 91090524 G A PCDH11X Silent p.T7T 0.53 TCGA-G4-6628-01 X 92928043 92928043 C T NAP1L3 Silent p.A87A 0.39 TCGA-G4-6628-01 X 9656110 9656110 C T TBL1X Silent p.A137A 0.55 TCGA-G4-6628-01 X 99942102 99942102 C T SYTL4 Silent p.Q382Q 0.72 TCGA-G4-6628-01 Y 2847675 2847675 A - ZFY Frame_Shift_Del p.M685Cfs*17 0.38 TCGA-NH-A50T-01 10 134598498 134598498 C T NKX6-2 Silent p.T252T 0.18 TCGA-NH-A50T-01 10 49687765 49687765 G A ARHGAP22 Missense_Mutation p.A122V 0.13 deleterious(0.01) benign(0.269) TCGA-NH-A50T-01 10 50315914 50315914 C T VSTM4 Missense_Mutation p.R61H 0.24 deleterious(0.03) probably_damaging(1) TCGA-NH-A50T-01 10 50530877 50530877 C T C10orf71 Missense_Mutation p.A96V 0.40 deleterious(0) probably_damaging(1) TCGA-NH-A50T-01 10 74098067 74098067 G A DNAJB12 Silent p.G276G 0.40 TCGA-NH-A50T-01 11 1093838 1093838 C G MUC2 Missense_Mutation p.T1886S 0.10 unknown(0) TCGA-NH-A50T-01 11 2167591 2167591 C T INS-IGF2 3'Flank 0.55 TCGA-NH-A50T-01 11 24936023 24936023 C A LUZP2 Nonsense_Mutation p.S154* 0.29 TCGA-NH-A50T-01 11 33566847 33566847 C T KIAA1549L Missense_Mutation p.S806L 0.61 deleterious(0) benign(0.23) TCGA-NH-A50T-01 11 45891725 45891725 G A CRY2 Missense_Mutation p.R460H 0.39 deleterious(0) probably_damaging(0.953) TCGA-NH-A50T-01 11 49229912 49229912 C T FOLH1 Missense_Mutation p.R17H 0.37 tolerated_low_confidence(0.09) benign(0.366) TCGA-NH-A50T-01 11 5443794 5443794 G A OR51Q1 Missense_Mutation p.V122I 0.40 deleterious(0.02) benign(0.001) TCGA-NH-A50T-01 11 63078576 63078576 A - SLC22A10 3'UTR 0.46 TCGA-NH-A50T-01 11 64893015 64893015 C T MRPL49 Silent p.P95P 0.41 TCGA-NH-A50T-01 11 64940475 64940475 C T SPDYC Silent p.Y279Y 0.37 TCGA-NH-A50T-01 11 65164427 65164427 G A FRMD8 Missense_Mutation p.E247K 0.31 tolerated(0.12) possibly_damaging(0.453) TCGA-NH-A50T-01 11 73021218 73021218 G A ARHGEF17 Missense_Mutation p.G512D 0.38 tolerated_low_confidence(0.13) benign(0.001) TCGA-NH-A50T-01 11 75439019 75439019 G A MOGAT2 Silent p.L160L 0.29 TCGA-NH-A50T-01 12 132322650 132322650 G T MMP17 Intron 0.38 TCGA-NH-A50T-01 12 31944956 31944956 G A H3F3C Nonsense_Mutation p.R49* 0.37 TCGA-NH-A50T-01 12 49942747 49942747 G A KCNH3 Missense_Mutation p.G420E 0.20 tolerated(0.14) benign(0.002) TCGA-NH-A50T-01 12 53185493 53185493 G A KRT3 Silent p.I432I 0.52 TCGA-NH-A50T-01 12 6140737 6140737 C A VWF Missense_Mutation p.C898F 0.47 deleterious(0) probably_damaging(0.99) TCGA-NH-A50T-01 12 94641718 94641718 G T PLXNC1 Missense_Mutation p.A810S 0.41 tolerated(0.28) benign(0.31) TCGA-NH-A50T-01 13 110864227 110864227 C T COL4A1 Missense_Mutation p.A144T 0.66 unknown(0) TCGA-NH-A50T-01 13 113814447 113814447 G C PROZ Missense_Mutation p.V86L 0.18 tolerated(0.11) benign(0.005) TCGA-NH-A50T-01 13 41768222 41768222 C T KBTBD7 Missense_Mutation p.D58N 0.71 deleterious(0) probably_damaging(1) TCGA-NH-A50T-01 14 23858877 23858877 G A MYH6 Missense_Mutation p.R1262C 0.06 deleterious(0) probably_damaging(0.982) TCGA-NH-A50T-01 14 75746599 75746599 C T FOS Missense_Mutation p.A54V 0.31 tolerated(0.09) benign(0.032) TCGA-NH-A50T-01 14 86089812 86089812 G A FLRT2 Missense_Mutation p.V652M 0.28 deleterious(0) probably_damaging(0.947) TCGA-NH-A50T-01 14 92959939 92959939 C T SLC24A4 Silent p.F612F 0.05 TCGA-NH-A50T-01 15 22368771 22368771 C T OR4M2 Silent p.L66L 0.24 TCGA-NH-A50T-01 15 28259965 28259965 G A OCA2 Missense_Mutation p.A334V 0.48 deleterious(0) probably_damaging(0.999) TCGA-NH-A50T-01 15 43712824 43712824 G A TP53BP1 Nonsense_Mutation p.R1454* 0.52 TCGA-NH-A50T-01 15 43714052 43714052 C T TP53BP1 Splice_Site p.X1367_splice 0.46 TCGA-NH-A50T-01 15 44087326 44087326 C T SERINC4 Missense_Mutation p.V477I 0.38 tolerated(0.16) benign(0.127) TCGA-NH-A50T-01 15 69560863 69560863 G A GLCE Silent p.K378K 0.45 TCGA-NH-A50T-01 15 74327747 74327747 C T PML Intron 0.36 TCGA-NH-A50T-01 15 80873648 80873648 G A ARNT2 Silent p.P607P 0.49 TCGA-NH-A50T-01 16 11771193 11771193 C A SNN 3'UTR 0.85 TCGA-NH-A50T-01 16 354314 354314 C T AXIN1 Missense_Mutation p.R415H 0.33 deleterious(0) probably_damaging(0.953) TCGA-NH-A50T-01 17 1438742 1438742 T C PITPNA Missense_Mutation p.N176S 0.19 tolerated(0.1) benign(0.028) TCGA-NH-A50T-01 17 18874682 18874682 T C FAM83G Missense_Mutation p.K821R 0.21 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-NH-A50T-01 17 29161500 29161500 T C ATAD5 Missense_Mutation p.I134T 0.67 deleterious(0.02) possibly_damaging(0.484) TCGA-NH-A50T-01 17 44068860 44068860 G A MAPT Missense_Mutation p.R472Q 0.73 deleterious(0.01) probably_damaging(0.988) TCGA-NH-A50T-01 17 44847186 44847186 G A WNT3 Missense_Mutation p.S184L 0.21 tolerated(0.15) possibly_damaging(0.625) TCGA-NH-A50T-01 17 75192306 75192306 C G SEC14L1 Missense_Mutation p.I244M 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A50T-01 17 80006557 80006557 G A RFNG 3'UTR 0.25 TCGA-NH-A50T-01 17 80043133 80043133 C T FASN Missense_Mutation p.R1423H 0.62 tolerated(0.09) benign(0.001) TCGA-NH-A50T-01 18 30260394 30260394 G T KLHL14 Missense_Mutation p.H469Q 0.30 tolerated(0.07) probably_damaging(0.967) TCGA-NH-A50T-01 18 9254847 9254848 - AAGAT ANKRD12 Frame_Shift_Ins p.D530Kfs*23 0.34 TCGA-NH-A50T-01 19 12759980 12759980 G T MAN2B1 Missense_Mutation p.S802R 0.20 deleterious(0) probably_damaging(0.994) TCGA-NH-A50T-01 19 15989406 15989406 G A CYP4F2 3'UTR 0.53 TCGA-NH-A50T-01 19 19369362 19369362 C T HAPLN4 Missense_Mutation p.D263N 0.44 deleterious(0) probably_damaging(0.943) TCGA-NH-A50T-01 19 23159727 23159727 T A ZNF728 Missense_Mutation p.T138S 0.32 tolerated(0.25) benign(0.075) TCGA-NH-A50T-01 19 33098730 33098730 C T ANKRD27 Silent p.A728A 0.37 TCGA-NH-A50T-01 19 3550991 3550991 G A MFSD12 Missense_Mutation p.T167M 0.08 probably_damaging(0.985) TCGA-NH-A50T-01 19 3589486 3589486 C T GIPC3 Missense_Mutation p.A213V 0.23 tolerated(0.24) benign(0.213) TCGA-NH-A50T-01 19 45656015 45656015 C T NKPD1 Silent p.P560P 0.23 TCGA-NH-A50T-01 19 51462476 51462476 A G KLK6 Missense_Mutation p.Y227H 0.11 deleterious(0) probably_damaging(1) TCGA-NH-A50T-01 19 58016741 58016741 G T ZNF773 Nonsense_Mutation p.E79* 0.38 TCGA-NH-A50T-01 19 7546998 7546998 C G PEX11G Missense_Mutation p.V117L 0.13 tolerated(0.45) benign(0.016) TCGA-NH-A50T-01 19 9296994 9296994 C T OR7D2 Silent p.C179C 0.35 TCGA-NH-A50T-01 1 101200102 101200102 G T VCAM1 Missense_Mutation p.V613F 0.23 deleterious(0) probably_damaging(0.976) TCGA-NH-A50T-01 1 120457987 120457987 C T NOTCH2 Missense_Mutation p.R2453Q 0.25 tolerated(0.16) probably_damaging(0.984) TCGA-NH-A50T-01 1 155264054 155264054 G A PKLR Missense_Mutation p.A363V 0.53 tolerated(0.19) benign(0.019) TCGA-NH-A50T-01 1 156843595 156843595 G A NTRK1 Missense_Mutation p.V341M 0.57 tolerated(0.25) benign(0.036) TCGA-NH-A50T-01 1 16344488 16344488 G A HSPB7 5'UTR 0.35 TCGA-NH-A50T-01 1 17256958 17256958 C T CROCC Nonsense_Mutation p.R240* 0.21 TCGA-NH-A50T-01 1 180064744 180064744 G A CEP350 Silent p.A2866A 0.48 TCGA-NH-A50T-01 1 197094212 197094212 G C ASPM Missense_Mutation p.L1016V 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A50T-01 1 204943334 204943334 G A NFASC Missense_Mutation p.R436Q 0.16 tolerated(0.42) probably_damaging(0.988) TCGA-NH-A50T-01 1 241823863 241823863 G A WDR64 Silent p.S59S 0.33 TCGA-NH-A50T-01 1 246811223 246811223 G A CNST Missense_Mutation p.D574N 0.51 deleterious(0) probably_damaging(0.97) TCGA-NH-A50T-01 1 28167586 28167586 C T PPP1R8 Silent p.I111I 0.60 TCGA-NH-A50T-01 1 36939086 36939086 G A CSF3R Missense_Mutation p.A208V 0.16 tolerated(0.17) benign(0.006) TCGA-NH-A50T-01 1 75100367 75100367 C A C1orf173 Intron 0.45 TCGA-NH-A50T-01 20 35386550 35386550 C T DSN1 Missense_Mutation p.R222H 0.16 tolerated(0.25) possibly_damaging(0.885) TCGA-NH-A50T-01 20 58467758 58467758 T A SYCP2 Splice_Site p.X598_splice 0.28 TCGA-NH-A50T-01 20 60903001 60903001 C T LAMA5 Missense_Mutation p.R1573H 0.21 benign(0.272) TCGA-NH-A50T-01 20 61941243 61941243 C T COL20A1 Silent p.A413A 0.12 TCGA-NH-A50T-01 20 62384065 62384065 G A ZBTB46 Missense_Mutation p.R458C 0.20 deleterious(0) possibly_damaging(0.879) TCGA-NH-A50T-01 20 62521229 62521229 C T TPD52L2 Silent p.N207N 0.16 TCGA-NH-A50T-01 22 50943408 50943408 C T LMF2 Silent p.P420P 0.21 TCGA-NH-A50T-01 2 106694362 106694362 G A C2orf40 Missense_Mutation p.V143I 0.53 deleterious(0) possibly_damaging(0.608) TCGA-NH-A50T-01 2 11720873 11720873 G A GREB1 Silent p.P272P 0.60 TCGA-NH-A50T-01 2 155555563 155555563 C G KCNJ3 Silent p.T92T 0.21 TCGA-NH-A50T-01 2 234359581 234359581 G A DGKD Silent p.P684P 0.42 TCGA-NH-A50T-01 2 67632059 67632059 A C ETAA1 Missense_Mutation p.N749H 0.65 deleterious(0.03) probably_damaging(0.989) TCGA-NH-A50T-01 2 74042610 74042610 T A C2orf78 Missense_Mutation p.N420K 0.29 tolerated(1) benign(0.002) TCGA-NH-A50T-01 2 86260871 86260871 A C POLR1A Missense_Mutation p.N1358K 0.33 tolerated(0.74) benign(0.005) TCGA-NH-A50T-01 3 112997025 112997025 C T BOC Silent p.P541P 0.18 TCGA-NH-A50T-01 3 122628815 122628815 C T SEMA5B 3'UTR 0.82 TCGA-NH-A50T-01 3 132319565 132319565 G A ACKR4 Silent p.G108G 0.61 TCGA-NH-A50T-01 3 140401460 140401460 C T TRIM42 Silent p.C166C 0.62 TCGA-NH-A50T-01 3 178916924 178916924 C G PIK3CA Missense_Mutation p.P104R 0.65 tolerated(0.1) possibly_damaging(0.896) TCGA-NH-A50T-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.66 deleterious(0.04) probably_damaging(0.96) TCGA-NH-A50T-01 3 194117736 194117736 C T GP5 Missense_Mutation p.D426N 0.15 deleterious(0.03) possibly_damaging(0.853) TCGA-NH-A50T-01 3 386339 386339 A C CHL1 Silent p.S265S 0.46 TCGA-NH-A50T-01 3 3886583 3886583 G T LRRN1 Missense_Mutation p.K86N 0.36 tolerated(0.12) benign(0.002) TCGA-NH-A50T-01 3 52554302 52554302 G A STAB1 Missense_Mutation p.R1832Q 0.30 tolerated(0.43) possibly_damaging(0.774) TCGA-NH-A50T-01 3 62259499 62259499 C T PTPRG Nonsense_Mutation p.R1149* 0.22 TCGA-NH-A50T-01 3 77626656 77626656 C G ROBO2 Missense_Mutation p.P756R 0.21 deleterious(0) probably_damaging(0.942) TCGA-NH-A50T-01 3 95374250 95374250 A G MTHFD2P1 RNA 0.19 TCGA-NH-A50T-01 4 121774692 121774692 G A PRDM5 Missense_Mutation p.R61C 0.23 deleterious(0.04) benign(0.04) TCGA-NH-A50T-01 4 138452143 138452143 G A PCDH18 Missense_Mutation p.S367F 0.26 deleterious(0) possibly_damaging(0.633) TCGA-NH-A50T-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.83 deleterious(0) probably_damaging(0.998) TCGA-NH-A50T-01 4 176594960 176594960 G A GPM6A Silent p.Y86Y 0.24 TCGA-NH-A50T-01 4 184203805 184203805 C T WWC2 Intron 0.52 TCGA-NH-A50T-01 4 39114729 39114729 C T KLHL5 Missense_Mutation p.A639V 0.50 deleterious(0) probably_damaging(0.938) TCGA-NH-A50T-01 4 44449874 44449874 T C KCTD8 Missense_Mutation p.N223D 0.36 tolerated(0.05) benign(0.051) TCGA-NH-A50T-01 4 55991583 55991583 C T KDR 5'UTR 0.52 TCGA-NH-A50T-01 4 57860682 57860682 C T POLR2B Missense_Mutation p.T119M 0.23 deleterious(0) probably_damaging(1) TCGA-NH-A50T-01 4 88356138 88356138 C T NUDT9 Missense_Mutation p.S38L 0.55 tolerated(0.71) benign(0.001) TCGA-NH-A50T-01 5 112175454 112175455 - TTCT APC Frame_Shift_Ins p.V1390Ffs*6 0.39 TCGA-NH-A50T-01 5 13817761 13817761 G A DNAH5 Missense_Mutation p.A2295V 0.34 possibly_damaging(0.798) TCGA-NH-A50T-01 5 140167389 140167389 C A PCDHA1 Nonsense_Mutation p.S505* 0.21 TCGA-NH-A50T-01 5 140797539 140797539 C T PCDHGB7 Missense_Mutation p.P38L 0.33 tolerated(0.05) possibly_damaging(0.485) TCGA-NH-A50T-01 5 169675779 169675779 C A LCP2 Missense_Mutation p.M508I 0.15 deleterious(0.02) benign(0.164) TCGA-NH-A50T-01 5 175959070 175959070 C T RNF44 Missense_Mutation p.G78R 0.46 tolerated(0.18) benign(0.001) TCGA-NH-A50T-01 5 3600732 3600732 T A IRX1 Missense_Mutation p.L441H 0.46 tolerated(0.54) benign(0.397) TCGA-NH-A50T-01 5 39376887 39376887 C T DAB2 Missense_Mutation p.A668T 0.38 deleterious(0.01) possibly_damaging(0.626) TCGA-NH-A50T-01 5 56181765 56181765 C T MAP3K1 Missense_Mutation p.S1330L 0.53 deleterious(0) probably_damaging(0.934) TCGA-NH-A50T-01 5 77072099 77072099 G A TBCA 5'UTR 0.43 TCGA-NH-A50T-01 5 82833673 82833673 A C VCAN Missense_Mutation p.E1617D 0.21 deleterious(0.05) benign(0.021) TCGA-NH-A50T-01 6 114279866 114279866 A G HDAC2 Missense_Mutation p.L77P 0.24 deleterious(0) probably_damaging(1) TCGA-NH-A50T-01 6 152671413 152671413 G T SYNE1 Missense_Mutation p.L3931I 0.21 probably_damaging(0.96) TCGA-NH-A50T-01 6 27279070 27279070 G A POM121L2 Missense_Mutation p.R294W 0.29 tolerated(0.13) benign(0.006) TCGA-NH-A50T-01 6 27805937 27805937 C T HIST1H2AK Missense_Mutation p.A61T 0.03 deleterious_low_confidence(0.01) benign(0.072) TCGA-NH-A50T-01 6 30309726 30309726 G A TRIM39 Missense_Mutation p.R416Q 0.58 deleterious(0) probably_damaging(0.997) TCGA-NH-A50T-01 6 39513417 39513417 C T KIF6 Missense_Mutation p.S410N 0.30 deleterious(0.02) possibly_damaging(0.573) TCGA-NH-A50T-01 6 74001757 74001757 T C KHDC1 Missense_Mutation p.N57S 0.20 tolerated_low_confidence(0.5) unknown(0) TCGA-NH-A50T-01 7 142658931 142658931 G A KEL Missense_Mutation p.P11L 0.26 tolerated_low_confidence(0.35) benign(0.001) TCGA-NH-A50T-01 7 19184548 19184548 G T FERD3L Silent p.A146A 0.13 TCGA-NH-A50T-01 7 48312997 48312998 - A ABCA13 Frame_Shift_Ins p.L1248Tfs*2 0.12 TCGA-NH-A50T-01 7 74563984 74563984 C T GTF2IRD2B Silent p.S577S 0.12 TCGA-NH-A50T-01 8 105509326 105509326 C T LRP12 Missense_Mutation p.C485Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-NH-A50T-01 8 116616509 116616509 A G TRPS1 Missense_Mutation p.Y563H 0.72 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NH-A50T-01 8 117783731 117783731 G C UTP23 Missense_Mutation p.G134R 0.17 deleterious(0) possibly_damaging(0.867) TCGA-NH-A50T-01 8 140631019 140631019 C T KCNK9 Missense_Mutation p.G203R 0.71 deleterious(0) probably_damaging(0.997) TCGA-NH-A50T-01 8 1626685 1626685 G A DLGAP2 Missense_Mutation p.R785H 0.61 tolerated(0.44) benign(0.12) TCGA-NH-A50T-01 8 3081363 3081363 G T CSMD1 Missense_Mutation p.P1458T 0.11 probably_damaging(0.939) TCGA-NH-A50T-01 8 33342707 33342707 C T MAK16 5'UTR 0.76 TCGA-NH-A50T-01 8 38095673 38095673 C T DDHD2 Nonsense_Mutation p.R190* 0.15 TCGA-NH-A50T-01 8 99140723 99140723 C T POP1 Silent p.N147N 0.15 TCGA-NH-A50T-01 8 99148830 99148830 G A POP1 Missense_Mutation p.E378K 0.45 tolerated(0.29) benign(0.023) TCGA-NH-A50T-01 9 112705113 112705113 G A PALM2 Missense_Mutation p.R215H 0.40 tolerated(1) benign(0.001) TCGA-NH-A50T-01 9 118950120 118950120 C T PAPPA Missense_Mutation p.P368L 0.48 deleterious(0) possibly_damaging(0.726) TCGA-NH-A50T-01 9 124110381 124110381 C T AL161784.1 Missense_Mutation p.R51C 0.30 possibly_damaging(0.833) TCGA-NH-A50T-01 9 16419446 16419446 G A BNC2 Silent p.N947N 0.45 TCGA-NH-A50T-01 9 38620159 38620159 C A ANKRD18A Missense_Mutation p.A42S 0.06 deleterious(0.01) probably_damaging(0.956) TCGA-NH-A50T-01 9 78794533 78794533 G A PCSK5 Missense_Mutation p.S641N 0.41 tolerated(0.16) probably_damaging(0.998) TCGA-NH-A50T-01 9 80932599 80932599 G A PSAT1 Missense_Mutation p.V250I 0.39 tolerated(1) benign(0.007) TCGA-NH-A50T-01 9 96024138 96024138 G A WNK2 Missense_Mutation p.A1037T 0.52 unknown(0) TCGA-NH-A50T-01 X 106844807 106844807 C T FRMPD3 Missense_Mutation p.R1213W 0.05 tolerated_low_confidence(0.14) benign(0.003) TCGA-NH-A50T-01 X 135581787 135581787 G A HTATSF1 Missense_Mutation p.A73T 0.12 deleterious(0.01) possibly_damaging(0.889) TCGA-NH-A50T-01 X 139586833 139586833 G A SOX3 Silent p.G131G 0.64 TCGA-NH-A50T-01 X 141291597 141291597 A G MAGEC2 Silent p.S59S 0.58 TCGA-NH-A50T-01 X 149901048 149901048 C T MTMR1 Missense_Mutation p.T301M 0.22 deleterious(0) probably_damaging(0.981) TCGA-NH-A50T-01 X 155006771 155006771 C T SPRY3 3'UTR 0.55 TCGA-NH-A50T-01 X 21675503 21675503 G C KLHL34 Missense_Mutation p.A135G 0.30 deleterious(0.01) possibly_damaging(0.72) TCGA-NH-A50T-01 X 22291441 22291441 C A ZNF645 Silent p.V111V 0.19 TCGA-NH-A50T-01 X 40460014 40460014 T C ATP6AP2 Missense_Mutation p.F247L 0.27 deleterious(0.03) possibly_damaging(0.556) TCGA-NH-A50T-01 X 47430836 47430836 G A ARAF Missense_Mutation p.A601T 0.21 tolerated_low_confidence(1) benign(0.005) TCGA-NH-A50T-01 X 54161449 54161449 T G FAM120C Missense_Mutation p.E477D 0.16 tolerated(0.41) benign(0.006) TCGA-NH-A50T-01 X 54278109 54278109 G C WNK3 Missense_Mutation p.N793K 0.48 deleterious(0.01) possibly_damaging(0.621) TCGA-NH-A50T-01 X 65252389 65252389 G C VSIG4 Missense_Mutation p.D205E 0.34 deleterious(0) possibly_damaging(0.681) TCGA-NH-A50T-01 X 69478428 69478428 C T P2RY4 Silent p.A349A 0.23 TCGA-NH-A50T-01 X 8504869 8504869 G A KAL1 Missense_Mutation p.P522S 0.59 tolerated(0.52) probably_damaging(0.997) TCGA-NH-A50U-01 10 101089982 101089982 A G CNNM1 Missense_Mutation p.T280A 0.15 deleterious(0) benign(0.388) TCGA-NH-A50U-01 10 103531220 103531220 C T FGF8 Silent p.K148K 0.16 TCGA-NH-A50U-01 10 21970262 21970262 A G MLLT10 Silent p.E541E 0.31 TCGA-NH-A50U-01 10 26534896 26534896 C A GAD2 Missense_Mutation p.T296K 0.54 deleterious(0.02) probably_damaging(0.934) TCGA-NH-A50U-01 10 73565677 73565677 T A CDH23 Missense_Mutation p.F423I 0.19 tolerated(0.36) benign(0.016) TCGA-NH-A50U-01 10 93014 93014 C T TUBB8 Missense_Mutation p.E440K 0.33 deleterious_low_confidence(0.05) unknown(0) TCGA-NH-A50U-01 11 121016483 121016483 C T TECTA Missense_Mutation p.P1255S 0.59 tolerated(0.18) benign(0.004) TCGA-NH-A50U-01 11 56257988 56257988 T C OR5M8 Missense_Mutation p.I287V 0.31 tolerated(0.08) benign(0) TCGA-NH-A50U-01 11 992645 992645 G T AP2A2 Missense_Mutation p.R471L 0.31 deleterious(0.04) benign(0.048) TCGA-NH-A50U-01 11 99827597 99827597 C G CNTN5 Missense_Mutation p.R245G 0.13 deleterious(0) probably_damaging(1) TCGA-NH-A50U-01 12 133209267 133209267 G A POLE Missense_Mutation p.A2040V 0.29 tolerated(0.3) benign(0.001) TCGA-NH-A50U-01 12 18836135 18836135 C T PLCZ1 3'UTR 0.83 TCGA-NH-A50U-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.50 deleterious(0) benign(0.361) TCGA-NH-A50U-01 12 40964459 40964459 A G MUC19 3'UTR 0.23 TCGA-NH-A50U-01 12 42781291 42781291 C T PPHLN1 Missense_Mutation p.S201L 0.41 deleterious(0.01) possibly_damaging(0.858) TCGA-NH-A50U-01 12 44926377 44926377 T C NELL2 Silent p.G647G 0.05 TCGA-NH-A50U-01 12 53044220 53044220 T C KRT2 Missense_Mutation p.S235G 0.13 tolerated(0.15) benign(0.284) TCGA-NH-A50U-01 12 85623316 85623316 A G LRRIQ1 Missense_Mutation p.H1615R 0.12 tolerated(0.6) benign(0.093) TCGA-NH-A50U-01 13 77713459 77713459 C T MYCBP2 Missense_Mutation p.D2473N 0.49 probably_damaging(0.991) TCGA-NH-A50U-01 13 86368834 86368834 C T SLITRK6 Missense_Mutation p.A604T 0.28 tolerated(0.91) benign(0.011) TCGA-NH-A50U-01 14 105932860 105932860 C T MTA1 Silent p.N574N 0.16 TCGA-NH-A50U-01 14 38724703 38724703 A G CLEC14A Silent p.F175F 0.59 TCGA-NH-A50U-01 14 50587063 50587063 C T SOS2 Missense_Mutation p.S1140N 0.49 tolerated(0.07) benign(0.066) TCGA-NH-A50U-01 14 64921540 64921540 C T MTHFD1 Missense_Mutation p.R889C 0.13 deleterious(0) probably_damaging(0.977) TCGA-NH-A50U-01 14 76905813 76905813 C T ESRRB Silent p.S39S 0.30 TCGA-NH-A50U-01 14 96944900 96944900 C T AK7 Nonsense_Mutation p.R552* 0.63 TCGA-NH-A50U-01 15 40278058 40278058 C T EIF2AK4 Missense_Mutation p.T791M 0.09 tolerated(0.15) benign(0.04) TCGA-NH-A50U-01 15 49292062 49292062 C T SECISBP2L Missense_Mutation p.V791I 0.67 tolerated(0.15) probably_damaging(0.989) TCGA-NH-A50U-01 15 54630582 54630582 A C UNC13C Silent p.P1536P 0.84 TCGA-NH-A50U-01 16 15125726 15125726 G A PDXDC1 Missense_Mutation p.V512I 0.35 tolerated(0.44) benign(0.008) TCGA-NH-A50U-01 16 74401 74401 C T WASH4P 5'Flank 0.42 TCGA-NH-A50U-01 16 81190514 81190514 C T PKD1L2 RNA 0.33 TCGA-NH-A50U-01 16 9892293 9892293 C T GRIN2A Missense_Mutation p.A733T 0.08 deleterious(0) probably_damaging(0.984) TCGA-NH-A50U-01 17 11881435 11881435 A G ZNF18 Missense_Mutation p.C497R 0.83 deleterious(0) probably_damaging(1) TCGA-NH-A50U-01 17 11881436 11881436 G A ZNF18 Silent p.I496I 0.83 TCGA-NH-A50U-01 17 2601848 2601848 C T CLUH Missense_Mutation p.A397T 0.69 deleterious(0) probably_damaging(0.996) TCGA-NH-A50U-01 17 26108178 26108178 G A NOS2 Missense_Mutation p.R250W 0.55 deleterious(0) probably_damaging(1) TCGA-NH-A50U-01 17 51901323 51901323 C T KIF2B Missense_Mutation p.T310M 0.76 deleterious(0) probably_damaging(1) TCGA-NH-A50U-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.83 TCGA-NH-A50U-01 18 29039868 29039868 A T DSG3 Missense_Mutation p.K193I 0.76 deleterious(0.01) possibly_damaging(0.589) TCGA-NH-A50U-01 18 45394784 45394784 C A SMAD2 Nonsense_Mutation p.E189* 0.81 TCGA-NH-A50U-01 18 77918014 77918014 C T PARD6G Silent p.V257V 0.80 TCGA-NH-A50U-01 19 15839218 15839218 G A OR10H2 Missense_Mutation p.R122H 0.87 deleterious(0.02) probably_damaging(0.953) TCGA-NH-A50U-01 19 22379519 22379519 T C ZNF676 5'UTR 0.41 TCGA-NH-A50U-01 19 39051851 39051851 C T RYR1 Silent p.F4127F 0.64 TCGA-NH-A50U-01 19 39440705 39440705 G A FBXO17 Silent p.N85N 0.18 TCGA-NH-A50U-01 19 4180826 4180826 G A SIRT6 Silent p.F49F 0.87 TCGA-NH-A50U-01 19 46329608 46329608 G A SYMPK Silent p.F735F 0.74 TCGA-NH-A50U-01 19 51844984 51844984 C T VSIG10L Silent p.P106P 0.83 TCGA-NH-A50U-01 19 54969395 54969395 C T LENG8 Silent p.F672F 0.12 TCGA-NH-A50U-01 19 57328890 57328890 T G PEG3 Missense_Mutation p.D307A 0.37 tolerated(0.1) possibly_damaging(0.614) TCGA-NH-A50U-01 1 104297408 104297408 G A AMY1C Missense_Mutation p.R358H 0.18 tolerated(0.52) benign(0.001) TCGA-NH-A50U-01 1 115593133 115593133 C A TSPAN2 Missense_Mutation p.R215L 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-NH-A50U-01 1 152188548 152188548 C T HRNR Missense_Mutation p.G1853S 0.16 unknown(0) TCGA-NH-A50U-01 1 156377542 156377542 G A C1orf61 Intron 0.32 TCGA-NH-A50U-01 1 157516832 157516832 T G FCRL5 Missense_Mutation p.T70P 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-NH-A50U-01 1 171510319 171510319 C T PRRC2C Silent p.L1236L 0.45 TCGA-NH-A50U-01 1 201780803 201780803 G A NAV1 Missense_Mutation p.V1624M 0.49 deleterious(0) probably_damaging(0.972) TCGA-NH-A50U-01 1 216138812 216138812 G T USH2A Silent p.R2323R 0.33 TCGA-NH-A50U-01 1 216850717 216850718 - GGC ESRRG In_Frame_Ins p.S62_P63insR 0.33 TCGA-NH-A50U-01 1 227219155 227219162 TGTCTGCT - CDC42BPA Frame_Shift_Del p.A1170* 0.35 TCGA-NH-A50U-01 1 57185247 57185247 A C C1orf168 3'UTR 0.52 TCGA-NH-A50U-01 1 75100389 75100389 G T C1orf173 Intron 0.33 TCGA-NH-A50U-01 20 14306173 14306173 A C FLRT3 3'UTR 0.25 TCGA-NH-A50U-01 20 2776413 2776413 G A CPXM1 Missense_Mutation p.R518C 0.31 deleterious(0.02) benign(0.035) TCGA-NH-A50U-01 20 62407137 62407137 C T ZBTB46 Silent p.A372A 0.59 TCGA-NH-A50U-01 22 32813095 32813095 A G BPIFC Missense_Mutation p.F434S 0.79 tolerated(0.45) probably_damaging(1) TCGA-NH-A50U-01 22 39357422 39357422 C T APOBEC3A Missense_Mutation p.R69C 0.81 tolerated(0.12) benign(0.011) TCGA-NH-A50U-01 2 10560131 10560131 G A HPCAL1 Missense_Mutation p.R83Q 0.56 deleterious(0.02) possibly_damaging(0.491) TCGA-NH-A50U-01 2 215848472 215848472 G A ABCA12 Silent p.D1427D 0.58 TCGA-NH-A50U-01 2 231176275 231176275 C T SP140 Missense_Mutation p.R824C 0.23 deleterious(0) probably_damaging(1) TCGA-NH-A50U-01 2 241709069 241709069 G A KIF1A Missense_Mutation p.R466W 0.27 deleterious(0) probably_damaging(0.982) TCGA-NH-A50U-01 2 29240728 29240728 C T FAM179A Silent p.D422D 0.30 TCGA-NH-A50U-01 2 54119981 54119981 A C PSME4 Silent p.G1385G 0.30 TCGA-NH-A50U-01 2 5837977 5837977 G A SOX11 3'UTR 0.59 TCGA-NH-A50U-01 2 86831554 86831554 C A RNF103 Missense_Mutation p.L490F 0.57 tolerated(0.34) benign(0.14) TCGA-NH-A50U-01 2 96810004 96810004 C T DUSP2 Missense_Mutation p.A207T 0.18 tolerated(0.18) possibly_damaging(0.692) TCGA-NH-A50U-01 3 128526470 128526470 G A RAB7A Missense_Mutation p.V162M 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-NH-A50U-01 3 161214596 161214596 A G OTOL1 Translation_Start_Site p.M1? 0.43 deleterious(0) unknown(0) TCGA-NH-A50U-01 3 189526233 189526233 C T TP63 Missense_Mutation p.P166L 0.30 deleterious(0.02) probably_damaging(1) TCGA-NH-A50U-01 3 195295997 195295997 G A APOD Missense_Mutation p.S115L 0.53 tolerated(0.57) benign(0.026) TCGA-NH-A50U-01 3 37826498 37826498 C T ITGA9 Missense_Mutation p.R940C 0.23 deleterious(0) possibly_damaging(0.677) TCGA-NH-A50U-01 3 39437998 39437998 G T SLC25A38 Missense_Mutation p.G301V 0.08 deleterious(0) probably_damaging(0.997) TCGA-NH-A50U-01 3 49688386 49688386 G A BSN Silent p.P620P 0.56 TCGA-NH-A50U-01 3 52263119 52263119 C A TWF2 Missense_Mutation p.K327N 0.27 deleterious(0) benign(0.21) TCGA-NH-A50U-01 4 110415812 110415812 G A SEC24B Missense_Mutation p.A430T 0.05 tolerated_low_confidence(0.2) benign(0.004) TCGA-NH-A50U-01 4 13544058 13544058 G A NKX3-2 Silent p.S187S 0.41 TCGA-NH-A50U-01 4 183694735 183694735 G T TENM3 Missense_Mutation p.R1668L 0.34 deleterious(0) possibly_damaging(0.556) TCGA-NH-A50U-01 4 71472318 71472318 C T AMBN Silent p.S405S 0.26 TCGA-NH-A50U-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.43 TCGA-NH-A50U-01 5 115173438 115173438 C T ATG12 Missense_Mutation p.G63R 0.80 deleterious(0.01) probably_damaging(1) TCGA-NH-A50U-01 5 135693029 135693029 G A TRPC7 Missense_Mutation p.T16M 0.57 tolerated_low_confidence(0.25) benign(0.007) TCGA-NH-A50U-01 5 169310366 169310366 G T FAM196B Missense_Mutation p.S179R 0.35 tolerated(0.1) probably_damaging(0.998) TCGA-NH-A50U-01 5 45303767 45303767 C T HCN1 Missense_Mutation p.G518S 0.42 deleterious(0) probably_damaging(1) TCGA-NH-A50U-01 5 86642488 86642488 G T RASA1 Splice_Site p.X350_splice 0.65 TCGA-NH-A50U-01 6 100403985 100403985 G A MCHR2 Silent p.A13A 0.40 TCGA-NH-A50U-01 6 119345831 119345831 C A FAM184A Missense_Mutation p.D103Y 0.45 deleterious(0) probably_damaging(0.993) TCGA-NH-A50U-01 6 133767788 133767788 T C EYA4 Missense_Mutation p.L35P 0.48 deleterious_low_confidence(0.03) probably_damaging(0.97) TCGA-NH-A50U-01 6 133783490 133783490 T G EYA4 Missense_Mutation p.L152R 0.18 deleterious(0) probably_damaging(0.999) TCGA-NH-A50U-01 6 145948411 145948411 C T EPM2A 3'UTR 0.78 TCGA-NH-A50U-01 6 159653159 159653159 G T FNDC1 Nonsense_Mutation p.E539* 0.45 TCGA-NH-A50U-01 6 36982800 36982800 C T FGD2 Missense_Mutation p.R339C 0.20 deleterious(0) probably_damaging(0.986) TCGA-NH-A50U-01 6 39283128 39283133 CTCTGG - KCNK16 In_Frame_Del p.P246_E247del 0.29 TCGA-NH-A50U-01 6 42541483 42541483 A G UBR2 Silent p.Q30Q 0.45 TCGA-NH-A50U-01 6 55378858 55378858 A G HMGCLL1 Missense_Mutation p.I207T 0.37 deleterious(0) probably_damaging(0.934) TCGA-NH-A50U-01 6 90661275 90661275 G T BACH2 Missense_Mutation p.Q184K 0.43 tolerated(0.32) benign(0.005) TCGA-NH-A50U-01 6 97246404 97246404 G A GPR63 Nonsense_Mutation p.R402* 0.45 TCGA-NH-A50U-01 7 100028192 100028192 A C MEPCE Missense_Mutation p.N184T 0.60 tolerated(0.08) benign(0.159) TCGA-NH-A50U-01 7 102912317 102912318 - T DPY19L2P2 Splice_Site 0.26 TCGA-NH-A50U-01 7 128497191 128497191 C T FLNC Silent p.I2527I 0.26 TCGA-NH-A50U-01 7 141366196 141366196 C G KIAA1147 Missense_Mutation p.Q237H 0.17 deleterious(0.02) possibly_damaging(0.718) TCGA-NH-A50U-01 7 71571150 71571150 C T CALN1 Missense_Mutation p.R125H 0.67 tolerated(0.09) benign(0.011) TCGA-NH-A50U-01 7 86468387 86468387 G T GRM3 Missense_Mutation p.K519N 0.23 deleterious(0) probably_damaging(1) TCGA-NH-A50U-01 8 105405014 105405014 G A DPYS Missense_Mutation p.R481W 0.49 deleterious(0) benign(0.123) TCGA-NH-A50U-01 8 146106749 146106749 C T ZNF250 3'UTR 0.48 TCGA-NH-A50U-01 8 43197470 43197470 C T POTEA Intron 0.51 TCGA-NH-A50U-01 8 57079728 57079728 G A PLAG1 Missense_Mutation p.R193W 0.45 deleterious(0.04) probably_damaging(0.993) TCGA-NH-A50U-01 9 116999978 116999978 G A COL27A1 Missense_Mutation p.G904R 0.47 unknown(0) TCGA-NH-A50U-01 9 124979460 124979460 G A LHX6 Missense_Mutation p.S190L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-NH-A50U-01 9 140809139 140809139 C T CACNA1B Missense_Mutation p.A219V 0.42 deleterious(0) probably_damaging(0.918) TCGA-NH-A50U-01 9 71629038 71629039 - GCGGCGGCG PRKACG 5'UTR 0.18 TCGA-NH-A50U-01 X 105278242 105278242 C A SERPINA7 Missense_Mutation p.G343V 0.06 tolerated(0.46) probably_damaging(0.956) TCGA-NH-A50U-01 X 20043826 20043826 C T MAP7D2 Missense_Mutation p.A418T 0.04 tolerated(0.75) benign(0.163) TCGA-NH-A50U-01 X 72433660 72433662 GTC - NAP1L2 In_Frame_Del p.D223del 0.09 TCGA-NH-A50U-01 X 90692731 90692731 C A PABPC5 3'UTR 0.24 TCGA-NH-A50V-01 10 103590868 103590868 G A KCNIP2 Missense_Mutation p.P44S 0.27 tolerated_low_confidence(0.08) benign(0.053) TCGA-NH-A50V-01 10 50036850 50036850 C T WDFY4 Silent p.P2083P 0.17 TCGA-NH-A50V-01 10 50819046 50819046 C T SLC18A3 Missense_Mutation p.P87L 0.34 tolerated(0.35) benign(0.001) TCGA-NH-A50V-01 10 50902774 50902774 C T C10orf53 Intron 0.44 TCGA-NH-A50V-01 10 73461950 73461950 G A CDH23 Missense_Mutation p.V449I 0.04 tolerated(0.56) benign(0.032) TCGA-NH-A50V-01 10 8097743 8097743 C T GATA3 Missense_Mutation p.P42L 0.29 tolerated(0.82) benign(0.004) TCGA-NH-A50V-01 10 90492221 90492222 - T LIPK Frame_Shift_Ins p.A197Cfs*9 0.18 TCGA-NH-A50V-01 10 96028790 96028790 C T PLCE1 Silent p.F1462F 0.29 TCGA-NH-A50V-01 11 106558338 106558338 C T GUCY1A2 Silent p.S743S 0.30 TCGA-NH-A50V-01 11 113558887 113558887 G A TMPRSS5 3'UTR 0.31 TCGA-NH-A50V-01 11 113711447 113711447 C T USP28 Missense_Mutation p.R136H 0.23 deleterious(0.02) possibly_damaging(0.893) TCGA-NH-A50V-01 11 119243667 119243667 G A USP2 Missense_Mutation p.T175M 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.62) TCGA-NH-A50V-01 11 119243752 119243752 C T USP2 Missense_Mutation p.A147T 0.07 tolerated_low_confidence(0.18) benign(0.242) TCGA-NH-A50V-01 11 125778120 125778120 C T DDX25 Missense_Mutation p.A114V 0.18 tolerated(0.16) benign(0.117) TCGA-NH-A50V-01 11 1263688 1263688 G A MUC5B Missense_Mutation p.E1860K 0.04 unknown(0) TCGA-NH-A50V-01 11 129784653 129784653 C T PRDM10 Silent p.A933A 0.38 TCGA-NH-A50V-01 11 5905785 5905785 G A OR52E4 Nonsense_Mutation p.W88* 0.20 TCGA-NH-A50V-01 11 64544030 64544030 G A SF1 Missense_Mutation p.P159S 0.24 tolerated(0.05) possibly_damaging(0.793) TCGA-NH-A50V-01 11 67052759 67052759 C T ADRBK1 Silent p.S636S 0.19 TCGA-NH-A50V-01 11 74049528 74049528 G A PGM2L1 Missense_Mutation p.A584V 0.30 deleterious(0.03) probably_damaging(0.933) TCGA-NH-A50V-01 11 8662256 8662256 C T TRIM66 Missense_Mutation p.V409M 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-NH-A50V-01 12 105582049 105582049 A G APPL2 Splice_Site p.X551_splice 0.22 TCGA-NH-A50V-01 12 121432062 121432062 A C HNF1A Missense_Mutation p.N270T 0.26 deleterious(0) probably_damaging(0.999) TCGA-NH-A50V-01 12 18435244 18435244 T G PIK3C2G Missense_Mutation p.S77A 0.41 deleterious_low_confidence(0.03) benign(0.118) TCGA-NH-A50V-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.33 deleterious(0) possibly_damaging(0.479) TCGA-NH-A50V-01 12 31542275 31542275 T G DENND5B Missense_Mutation p.L1208F 0.08 tolerated(0.73) benign(0.162) TCGA-NH-A50V-01 12 33021968 33021968 G C PKP2 Missense_Mutation p.R355G 0.21 deleterious(0.01) possibly_damaging(0.851) TCGA-NH-A50V-01 12 45171089 45171089 C A NELL2 Missense_Mutation p.M255I 0.33 tolerated(0.62) benign(0.015) TCGA-NH-A50V-01 12 48107110 48107110 A G ENDOU Silent p.Y271Y 0.29 TCGA-NH-A50V-01 12 53589909 53589909 G A ITGB7 Silent p.D297D 0.27 TCGA-NH-A50V-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.28 deleterious(0.05) possibly_damaging(0.789) TCGA-NH-A50V-01 12 57894207 57894207 C T MARS Missense_Mutation p.R399C 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A50V-01 12 9162204 9162204 G T KLRG1 3'UTR 0.33 TCGA-NH-A50V-01 13 110845215 110845215 C T COL4A1 Missense_Mutation p.R476Q 0.18 benign(0.013) TCGA-NH-A50V-01 13 115002357 115002357 C T CDC16 Nonsense_Mutation p.R63* 0.41 TCGA-NH-A50V-01 13 24797382 24797382 C T SPATA13 Silent p.L105L 0.14 TCGA-NH-A50V-01 13 29599209 29599209 G A MTUS2 Missense_Mutation p.R135Q 0.18 tolerated(0.32) benign(0.003) TCGA-NH-A50V-01 13 32839656 32839656 C A FRY Missense_Mutation p.L2617I 0.22 tolerated(0.17) benign(0.003) TCGA-NH-A50V-01 13 88331571 88331572 - T SLITRK5 3'UTR 0.22 TCGA-NH-A50V-01 14 24771230 24771230 C T NOP9 Missense_Mutation p.R290C 0.51 deleterious(0) benign(0.002) TCGA-NH-A50V-01 15 22369029 22369029 G A OR4M2 Missense_Mutation p.G152S 0.24 deleterious(0.01) probably_damaging(1) TCGA-NH-A50V-01 15 34647758 34647758 G A NUTM1 Missense_Mutation p.A489T 0.35 tolerated(0.15) benign(0.014) TCGA-NH-A50V-01 15 40584093 40584093 G A PLCB2 Silent p.S853S 0.47 TCGA-NH-A50V-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.30 TCGA-NH-A50V-01 15 52664502 52664502 C T MYO5A Missense_Mutation p.R879H 0.26 deleterious(0) benign(0.064) TCGA-NH-A50V-01 15 68620587 68620587 C T ITGA11 Missense_Mutation p.V639I 0.43 tolerated(0.15) benign(0.189) TCGA-NH-A50V-01 16 1412515 1412515 G A GNPTG Missense_Mutation p.D197N 0.27 tolerated(0.07) benign(0.392) TCGA-NH-A50V-01 16 15725301 15725301 G A KIAA0430 Missense_Mutation p.R430W 0.22 deleterious(0) probably_damaging(0.92) TCGA-NH-A50V-01 16 22926932 22926932 G A HS3ST2 3'UTR 0.21 TCGA-NH-A50V-01 16 2812542 2812542 T C SRRM2 Silent p.S671S 0.32 TCGA-NH-A50V-01 16 48594835 48594835 C T N4BP1 Silent p.S573S 0.30 TCGA-NH-A50V-01 16 55362817 55362817 C T IRX6 Silent p.C309C 0.26 TCGA-NH-A50V-01 16 66943266 66943266 C T CDH16 Missense_Mutation p.V766M 0.32 tolerated(0.14) benign(0.006) TCGA-NH-A50V-01 16 84203491 84203491 G T DNAAF1 Nonsense_Mutation p.E353* 0.28 TCGA-NH-A50V-01 16 84485684 84485684 G A ATP2C2 Silent p.T606T 0.32 TCGA-NH-A50V-01 17 10363380 10363380 G A MYH4 Silent p.Y435Y 0.28 TCGA-NH-A50V-01 17 29233238 29233238 C G TEFM 5'UTR 0.28 TCGA-NH-A50V-01 17 29233265 29233265 C T TEFM 5'UTR 0.25 TCGA-NH-A50V-01 17 59485586 59485586 C T TBX2 Missense_Mutation p.R620C 0.08 deleterious(0) probably_damaging(0.99) TCGA-NH-A50V-01 17 65052212 65052212 T C CACNG1 Missense_Mutation p.M165T 0.31 deleterious(0) possibly_damaging(0.696) TCGA-NH-A50V-01 17 65907479 65907479 T G BPTF Missense_Mutation p.L1160R 0.12 benign(0.029) TCGA-NH-A50V-01 17 7416202 7416202 G A POLR2A Silent p.P1572P 0.53 TCGA-NH-A50V-01 17 74276134 74276134 G A QRICH2 Silent p.D1410D 0.36 TCGA-NH-A50V-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.49 tolerated(0.13) possibly_damaging(0.631) TCGA-NH-A50V-01 17 79612324 79612324 C G TSPAN10 Missense_Mutation p.P115A 0.15 tolerated(0.75) possibly_damaging(0.728) TCGA-NH-A50V-01 18 23937692 23937692 C T TAF4B Silent p.D785D 0.83 TCGA-NH-A50V-01 18 63481745 63481745 C T CDH7 Missense_Mutation p.A177V 0.39 deleterious(0) probably_damaging(0.991) TCGA-NH-A50V-01 19 1775243 1775243 G A ONECUT3 Silent p.T428T 0.32 TCGA-NH-A50V-01 19 19466159 19466159 C T MAU2 Missense_Mutation p.H576Y 0.21 tolerated(0.09) benign(0.046) TCGA-NH-A50V-01 19 19612071 19612071 C T GATAD2A Missense_Mutation p.A449V 0.25 deleterious(0.03) possibly_damaging(0.684) TCGA-NH-A50V-01 19 22586263 22586263 G T ZNF98 Missense_Mutation p.Q28K 0.22 tolerated(0.13) benign(0.067) TCGA-NH-A50V-01 19 34810842 34810842 C A KIAA0355 Missense_Mutation p.Q176K 0.06 deleterious(0.01) benign(0.025) TCGA-NH-A50V-01 19 36335284 36335284 C T NPHS1 Missense_Mutation p.V670M 0.37 deleterious(0.01) benign(0.304) TCGA-NH-A50V-01 19 42566699 42566699 G A GRIK5 Missense_Mutation p.S150F 0.30 tolerated(0.07) probably_damaging(0.931) TCGA-NH-A50V-01 19 42729433 42729433 G A ZNF526 Missense_Mutation p.R293Q 0.39 tolerated(0.09) probably_damaging(0.992) TCGA-NH-A50V-01 19 43372328 43372328 C T PSG1 Missense_Mutation p.G390R 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-NH-A50V-01 19 44223909 44223909 G A IRGC Missense_Mutation p.R400H 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-NH-A50V-01 19 45912242 45912242 T C CD3EAP Missense_Mutation p.M339T 0.30 tolerated(0.34) benign(0.007) TCGA-NH-A50V-01 19 47126873 47126873 C T PTGIR Missense_Mutation p.G204S 0.30 tolerated(0.38) benign(0.041) TCGA-NH-A50V-01 19 47969376 47969376 C T SLC8A2 Silent p.A95A 0.31 TCGA-NH-A50V-01 19 50826503 50826503 C T KCNC3 Silent p.P569P 0.27 TCGA-NH-A50V-01 19 52955096 52955096 C T ZNF578 5'Flank 0.16 TCGA-NH-A50V-01 19 55604006 55604006 G A PPP1R12C Missense_Mutation p.R646C 0.34 deleterious(0.02) benign(0.446) TCGA-NH-A50V-01 19 57175321 57175321 G A ZNF835 Missense_Mutation p.R416W 0.28 deleterious(0) probably_damaging(0.957) TCGA-NH-A50V-01 19 57742532 57742532 C - AURKC 5'UTR 0.26 TCGA-NH-A50V-01 19 58117995 58117995 C T ZNF530 Nonsense_Mutation p.R368* 0.23 TCGA-NH-A50V-01 1 109350061 109350062 - A STXBP3 Frame_Shift_Ins p.N527Kfs*17 0.18 TCGA-NH-A50V-01 1 13695876 13695876 G T PRAMEF19 Nonsense_Mutation p.Y363* 0.29 TCGA-NH-A50V-01 1 155146469 155146471 CTT - TRIM46 In_Frame_Del p.F10del 0.31 TCGA-NH-A50V-01 1 157068573 157068573 C T ETV3L Silent p.P137P 0.25 TCGA-NH-A50V-01 1 161161052 161161052 C G ADAMTS4 Missense_Mutation p.R797P 0.37 deleterious(0) probably_damaging(0.96) TCGA-NH-A50V-01 1 161681057 161681057 C T FCRLA Missense_Mutation p.R121C 0.29 deleterious(0) probably_damaging(0.977) TCGA-NH-A50V-01 1 167368523 167368523 A G POU2F1 Missense_Mutation p.E457G 0.36 deleterious(0) unknown(0) TCGA-NH-A50V-01 1 17706419 17706419 C A PADI6 RNA 0.19 TCGA-NH-A50V-01 1 236228340 236228340 G A NID1 Missense_Mutation p.R14W 0.30 tolerated(0.21) benign(0.005) TCGA-NH-A50V-01 1 236746352 236746352 A T HEATR1 Missense_Mutation p.F796I 0.51 tolerated(0.09) benign(0.186) TCGA-NH-A50V-01 1 240975339 240975339 C A RGS7 Nonsense_Mutation p.E321* 0.44 TCGA-NH-A50V-01 1 242030318 242030318 C A EXO1 Missense_Mutation p.L410I 0.26 deleterious(0.04) possibly_damaging(0.566) TCGA-NH-A50V-01 1 34164353 34164353 C T CSMD2 Missense_Mutation p.A1269T 0.37 deleterious(0) probably_damaging(0.932) TCGA-NH-A50V-01 1 35228952 35228952 A T GJB4 3'UTR 0.25 TCGA-NH-A50V-01 1 38260371 38260371 G A MANEAL Missense_Mutation p.E173K 0.37 tolerated(0.72) benign(0.173) TCGA-NH-A50V-01 1 42621249 42621249 G A GUCA2B Silent p.A107A 0.23 TCGA-NH-A50V-01 1 46745169 46745169 C T LRRC41 Missense_Mutation p.R713H 0.31 deleterious(0) possibly_damaging(0.715) TCGA-NH-A50V-01 1 50661247 50661247 G A ELAVL4 Missense_Mutation p.V192M 0.22 deleterious(0.02) probably_damaging(0.932) TCGA-NH-A50V-01 1 89834161 89834161 C T GBP6 Silent p.N17N 0.23 TCGA-NH-A50V-01 20 31607413 31607413 C A BPIFB2 Missense_Mutation p.P313T 0.21 deleterious(0.01) probably_damaging(0.92) TCGA-NH-A50V-01 20 39766389 39766390 TT - PLCG1 Frame_Shift_Del p.L37Vfs*37 0.17 TCGA-NH-A50V-01 20 4158147 4158147 G A SMOX Missense_Mutation p.V120M 0.42 deleterious(0.05) probably_damaging(0.982) TCGA-NH-A50V-01 20 53092442 53092442 G A DOK5 5'UTR 0.44 TCGA-NH-A50V-01 20 62701192 62701192 G A TCEA2 Intron 0.30 TCGA-NH-A50V-01 21 22696798 22696798 G T NCAM2 Nonsense_Mutation p.E239* 0.59 TCGA-NH-A50V-01 21 31023569 31023569 C T GRIK1 Missense_Mutation p.V275I 0.45 tolerated(0.05) probably_damaging(0.992) TCGA-NH-A50V-01 21 35476272 35476273 - T SLC5A3 3'UTR 0.12 TCGA-NH-A50V-01 21 41137670 41137670 C A IGSF5 Missense_Mutation p.N103K 0.26 deleterious(0.02) probably_damaging(0.935) TCGA-NH-A50V-01 21 42767634 42767634 A T MX2 Missense_Mutation p.Q331L 0.07 deleterious(0.01) possibly_damaging(0.674) TCGA-NH-A50V-01 22 21385781 21385781 G A SLC7A4 Silent p.Y107Y 0.52 TCGA-NH-A50V-01 22 21480616 21480616 C T POM121L7 Missense_Mutation p.R437H 0.19 deleterious_low_confidence(0) benign(0.01) TCGA-NH-A50V-01 22 26164790 26164790 G A MYO18B Missense_Mutation p.G303R 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-NH-A50V-01 2 138373843 138373843 C A THSD7B Nonsense_Mutation p.C1177* 0.48 TCGA-NH-A50V-01 2 138414450 138414450 G A THSD7B Missense_Mutation p.R1400H 0.05 tolerated(0.54) unknown(0) TCGA-NH-A50V-01 2 152402476 152402476 G A NEB Nonsense_Mutation p.R6835* 0.50 TCGA-NH-A50V-01 2 166894547 166894547 G A SCN1A Silent p.L895L 0.04 TCGA-NH-A50V-01 2 166894608 166894608 G A SCN1A Missense_Mutation p.T875M 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-NH-A50V-01 2 209219931 209219931 G A PIKFYVE Missense_Mutation p.V2067M 0.06 deleterious(0) probably_damaging(0.999) TCGA-NH-A50V-01 2 21225865 21225865 C T APOB Silent p.E4143E 0.26 TCGA-NH-A50V-01 2 21247996 21247996 C A APOB Missense_Mutation p.D749Y 0.27 probably_damaging(1) TCGA-NH-A50V-01 2 220353831 220353831 G T SPEG Silent p.V2735V 0.07 TCGA-NH-A50V-01 2 220440019 220440019 G T INHA Missense_Mutation p.C291F 0.05 deleterious(0) probably_damaging(1) TCGA-NH-A50V-01 2 23926091 23926091 C G KLHL29 Missense_Mutation p.A714G 0.33 deleterious(0.01) possibly_damaging(0.498) TCGA-NH-A50V-01 2 28117415 28117415 C A BRE 5'UTR 0.20 TCGA-NH-A50V-01 2 46739721 46739721 G A ATP6V1E2 Missense_Mutation p.R44C 0.51 tolerated(0.08) benign(0.348) TCGA-NH-A50V-01 2 74901669 74901669 G A SEMA4F Silent p.T289T 0.25 TCGA-NH-A50V-01 3 129303262 129303262 C T PLXND1 Silent p.P665P 0.31 TCGA-NH-A50V-01 3 134322871 134322871 G A KY Silent p.I512I 0.29 TCGA-NH-A50V-01 3 140281105 140281105 C T CLSTN2 Nonsense_Mutation p.R723* 0.33 TCGA-NH-A50V-01 3 147114142 147114142 A G ZIC4 Missense_Mutation p.L112P 0.19 tolerated(0.06) possibly_damaging(0.88) TCGA-NH-A50V-01 3 15084285 15084285 G A NR2C2 Intron 0.31 TCGA-NH-A50V-01 3 15643476 15643476 A T BTD Intron 0.46 TCGA-NH-A50V-01 3 167245641 167245641 A G WDR49 Silent p.G505G 0.31 TCGA-NH-A50V-01 3 167750423 167750423 G A GOLIM4 Missense_Mutation p.A354V 0.34 deleterious(0.01) probably_damaging(0.92) TCGA-NH-A50V-01 3 182740248 182740248 G A MCCC1 Missense_Mutation p.A609V 0.30 tolerated(0.59) benign(0.004) TCGA-NH-A50V-01 3 185638932 185638932 G A TRA2B Missense_Mutation p.R228W 0.31 deleterious(0) possibly_damaging(0.876) TCGA-NH-A50V-01 3 196863496 196863496 T C DLG1 Missense_Mutation p.N346D 0.26 tolerated(0.07) possibly_damaging(0.482) TCGA-NH-A50V-01 3 197408024 197408024 C T KIAA0226 Silent p.K802K 0.30 TCGA-NH-A50V-01 3 38349158 38349158 G A SLC22A14 Missense_Mutation p.R241H 0.27 deleterious(0.04) benign(0.391) TCGA-NH-A50V-01 3 38739944 38739944 C T SCN10A Silent p.A1589A 0.36 TCGA-NH-A50V-01 3 38755505 38755505 G A SCN10A Nonsense_Mutation p.R1250* 0.11 TCGA-NH-A50V-01 3 49162539 49162539 G A LAMB2 Silent p.P928P 0.26 TCGA-NH-A50V-01 3 55984491 55984491 G A ERC2 Nonsense_Mutation p.R789* 0.29 TCGA-NH-A50V-01 3 93758795 93758795 C T ARL13B Missense_Mutation p.T254M 0.33 tolerated(0.13) benign(0.003) TCGA-NH-A50V-01 4 1107163 1107163 G A RNF212 Silent p.C30C 0.27 TCGA-NH-A50V-01 4 114275201 114275201 G A ANK2 Silent p.A1809A 0.24 TCGA-NH-A50V-01 4 129131057 129131057 C A LARP1B Missense_Mutation p.S865Y 0.24 deleterious(0.05) benign(0.021) TCGA-NH-A50V-01 4 156725892 156725892 A G GUCY1B3 Missense_Mutation p.T568A 0.32 tolerated(0.6) benign(0.115) TCGA-NH-A50V-01 4 177036977 177036977 C A WDR17 Missense_Mutation p.H76N 0.10 tolerated(0.09) benign(0.201) TCGA-NH-A50V-01 4 26483767 26483767 G A CCKAR Silent p.S260S 0.32 TCGA-NH-A50V-01 4 55968172 55968172 G A KDR Missense_Mutation p.R720W 0.37 deleterious(0) probably_damaging(0.946) TCGA-NH-A50V-01 4 71895104 71895104 A T DCK 3'UTR 0.19 TCGA-NH-A50V-01 5 112175676 112175677 AG - APC Frame_Shift_Del p.S1465Wfs*3 0.57 TCGA-NH-A50V-01 5 112769053 112769053 C T TSSK1B 3'UTR 0.52 TCGA-NH-A50V-01 5 138264943 138264943 G T CTNNA1 Missense_Mutation p.E636D 0.56 tolerated(0.22) benign(0.026) TCGA-NH-A50V-01 5 140719130 140719130 C T PCDHGA2 Missense_Mutation p.R198C 0.22 deleterious_low_confidence(0.02) benign(0.325) TCGA-NH-A50V-01 5 140754304 140754304 C T PCDHGA6 Silent p.G218G 0.52 TCGA-NH-A50V-01 5 140774061 140774061 G A PCDHGA8 Missense_Mutation p.E561K 0.65 deleterious_low_confidence(0.03) benign(0.15) TCGA-NH-A50V-01 5 146833189 146833191 CTT - DPYSL3 Intron 0.21 TCGA-NH-A50V-01 5 150928877 150928877 C A FAT2 Missense_Mutation p.V1590F 0.54 benign(0.062) TCGA-NH-A50V-01 5 153760081 153760081 C G GALNT10 Nonsense_Mutation p.Y276* 0.60 TCGA-NH-A50V-01 5 16177970 16177970 G A MARCH11 Silent p.C186C 0.34 TCGA-NH-A50V-01 5 55466529 55466529 G A ANKRD55 Silent p.P138P 0.16 TCGA-NH-A50V-01 6 106969220 106969220 A C AIM1 Silent p.S971S 0.06 TCGA-NH-A50V-01 6 116949187 116949187 A G RSPH4A Silent p.R439R 0.27 TCGA-NH-A50V-01 6 126080729 126080729 C T HEY2 Silent p.H265H 0.26 TCGA-NH-A50V-01 6 151670787 151670787 G A AKAP12 Missense_Mutation p.V421I 0.32 tolerated(0.12) benign(0.028) TCGA-NH-A50V-01 6 152644715 152644715 C T SYNE1 Missense_Mutation p.R5272Q 0.20 benign(0.003) TCGA-NH-A50V-01 6 152651026 152651026 C T SYNE1 Missense_Mutation p.E4932K 0.22 probably_damaging(0.997) TCGA-NH-A50V-01 6 158537237 158537237 C T SERAC1 Nonsense_Mutation p.W494* 0.08 TCGA-NH-A50V-01 6 159660824 159660824 C T FNDC1 Missense_Mutation p.R1486C 0.25 deleterious_low_confidence(0.02) benign(0.013) TCGA-NH-A50V-01 6 168227203 168227222 GATCCAGCACCGCCCATTTG - MLLT4 5'Flank 0.21 TCGA-NH-A50V-01 6 29408443 29408443 C T OR10C1 Silent p.Y217Y 0.40 TCGA-NH-A50V-01 6 29431895 29431895 G T OR2H1 3'UTR 0.18 TCGA-NH-A50V-01 6 31474087 31474087 G A MICB Missense_Mutation p.V165I 0.33 tolerated(1) benign(0.007) TCGA-NH-A50V-01 6 32137166 32137166 C T AGPAT1 Missense_Mutation p.V247I 0.24 tolerated(0.08) benign(0.252) TCGA-NH-A50V-01 6 3851029 3851029 G A FAM50B 3'UTR 0.38 TCGA-NH-A50V-01 6 43322917 43322917 C A ZNF318 Missense_Mutation p.V719L 0.31 benign(0.005) TCGA-NH-A50V-01 6 53787655 53787655 C A LRRC1 3'UTR 0.27 TCGA-NH-A50V-01 6 54191662 54191662 G A TINAG Missense_Mutation p.R191H 0.27 deleterious(0.03) benign(0.062) TCGA-NH-A50V-01 6 57372342 57372342 C A PRIM2 Missense_Mutation p.L250I 0.20 deleterious(0) probably_damaging(0.919) TCGA-NH-A50V-01 6 97627364 97627364 C T MMS22L Missense_Mutation p.R819H 0.27 tolerated(0.05) benign(0.286) TCGA-NH-A50V-01 7 128483327 128483327 C T FLNC Silent p.H865H 0.36 TCGA-NH-A50V-01 7 141756637 141756637 G A MGAM Silent p.T1196T 0.38 TCGA-NH-A50V-01 7 148106558 148106558 T C CNTNAP2 Missense_Mutation p.I1264T 0.30 deleterious(0) benign(0.361) TCGA-NH-A50V-01 7 155503917 155503917 G A RBM33 Silent p.P323P 0.20 TCGA-NH-A50V-01 7 20725433 20725433 G C ABCB5 Missense_Mutation p.A662P 0.04 tolerated(0.3) benign(0.009) TCGA-NH-A50V-01 7 29440199 29440199 G A CHN2 Missense_Mutation p.G111R 0.24 deleterious(0) probably_damaging(0.999) TCGA-NH-A50V-01 7 4839022 4839022 G A RADIL Missense_Mutation p.T1072M 0.27 deleterious_low_confidence(0.04) benign(0.035) TCGA-NH-A50V-01 7 73246294 73246294 C A CLDN4 3'UTR 0.25 TCGA-NH-A50V-01 7 82582672 82582672 G T PCLO Missense_Mutation p.P2533T 0.28 unknown(0) TCGA-NH-A50V-01 7 90044840 90044840 C T CLDN12 3'UTR 0.36 TCGA-NH-A50V-01 7 93520004 93520004 G T TFPI2 5'UTR 0.27 TCGA-NH-A50V-01 7 97821500 97821500 G A LMTK2 Missense_Mutation p.D575N 0.31 deleterious(0) benign(0.21) TCGA-NH-A50V-01 8 133092187 133092187 T C HHLA1 Missense_Mutation p.T271A 0.30 tolerated(0.17) benign(0.068) TCGA-NH-A50V-01 8 144906509 144906509 C T PUF60 Missense_Mutation p.A29T 0.33 deleterious_low_confidence(0.05) benign(0.01) TCGA-NH-A50V-01 8 25189847 25189847 G C DOCK5 Missense_Mutation p.G662R 0.29 deleterious(0) probably_damaging(0.984) TCGA-NH-A50V-01 8 2796062 2796062 C T CSMD1 3'Flank 0.38 TCGA-NH-A50V-01 8 39466579 39466579 C A ADAM18 Missense_Mutation p.N69K 0.20 deleterious(0.03) possibly_damaging(0.803) TCGA-NH-A50V-01 8 41166154 41166154 G A SFRP1 Silent p.T175T 0.24 TCGA-NH-A50V-01 8 6681102 6681102 C T XKR5 RNA 0.44 TCGA-NH-A50V-01 8 70981820 70981820 C A PRDM14 Silent p.L92L 0.36 TCGA-NH-A50V-01 8 72756341 72756341 C T MSC Missense_Mutation p.A25T 0.23 tolerated_low_confidence(0.28) benign(0.003) TCGA-NH-A50V-01 8 77775486 77775486 G C ZFHX4 Missense_Mutation p.G3179A 0.22 possibly_damaging(0.509) TCGA-NH-A50V-01 8 81897386 81897386 C A PAG1 Missense_Mutation p.K167N 0.32 deleterious(0) probably_damaging(0.999) TCGA-NH-A50V-01 8 89086858 89086858 G T MMP16 Missense_Mutation p.S399R 0.23 tolerated(0.36) benign(0.029) TCGA-NH-A50V-01 9 111618013 111618013 C T ACTL7B Silent p.A66A 0.36 TCGA-NH-A50V-01 9 13223642 13223642 C A MPDZ Missense_Mutation p.G154V 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A50V-01 9 139261775 139261775 C T CARD9 Intron 0.21 TCGA-NH-A50V-01 9 21217240 21217240 A C IFNA16 Missense_Mutation p.L22R 0.30 deleterious(0.01) probably_damaging(0.946) TCGA-NH-A50V-01 9 21239948 21239948 G T IFNA14 5'UTR 0.05 TCGA-NH-A50V-01 9 2647567 2647567 C A VLDLR Silent p.I599I 0.31 TCGA-NH-A50V-01 9 34835263 34835263 G T FAM205B RNA 0.16 TCGA-NH-A50V-01 9 35841165 35841165 C T TMEM8B 5'UTR 0.29 TCGA-NH-A50V-01 9 80879225 80879225 G T CEP78 Missense_Mutation p.D541Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-NH-A50V-01 9 8404561 8404561 G A PTPRD Missense_Mutation p.R1396W 0.40 deleterious(0) probably_damaging(0.996) TCGA-NH-A50V-01 9 95481557 95481557 C T BICD2 Missense_Mutation p.R457H 0.36 tolerated(0.07) benign(0.003) TCGA-NH-A50V-01 X 117106700 117106700 G C KLHL13 Intron 0.43 TCGA-NH-A50V-01 X 3242032 3242032 C T MXRA5 Missense_Mutation p.R565H 0.58 tolerated(0.09) probably_damaging(0.954) TCGA-NH-A50V-01 X 47045555 47045555 T C RBM10 Missense_Mutation p.I841T 0.06 tolerated(0.4) benign(0.001) TCGA-NH-A50V-01 X 85166326 85166326 C T CHM Missense_Mutation p.G395D 0.50 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 10 100017796 100017797 AC - LOXL4 Frame_Shift_Del p.C349Sfs*28 0.31 TCGA-NH-A5IV-01 10 100189220 100189220 A G HPS1 Intron 0.18 TCGA-NH-A5IV-01 10 101166581 101166581 C - GOT1 Frame_Shift_Del p.G109Efs*12 0.28 TCGA-NH-A5IV-01 10 101371000 101371000 A G SLC25A28 Missense_Mutation p.M234T 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-NH-A5IV-01 10 101572827 101572827 G A ABCC2 Missense_Mutation p.G674S 0.42 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 10 102587324 102587324 C - PAX2 Frame_Shift_Del p.R403Gfs*37 0.31 TCGA-NH-A5IV-01 10 102827871 102827871 A - KAZALD1 3'Flank 0.48 TCGA-NH-A5IV-01 10 103339220 103339220 C T POLL Missense_Mutation p.R573Q 0.42 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 10 103899573 103899573 G A PPRC1 Silent p.P436P 0.62 TCGA-NH-A5IV-01 10 103908157 103908157 C T PPRC1 Nonsense_Mutation p.R1477* 0.39 TCGA-NH-A5IV-01 10 104486446 104486446 G A SFXN2 Missense_Mutation p.R18H 0.24 deleterious(0) benign(0.116) TCGA-NH-A5IV-01 10 104592882 104592882 G A CYP17A1 Silent p.G279G 0.13 TCGA-NH-A5IV-01 10 105215323 105215323 C T CALHM1 Missense_Mutation p.C246Y 0.42 deleterious(0.05) probably_damaging(0.998) TCGA-NH-A5IV-01 10 105238681 105238681 A T CALHM3 Missense_Mutation p.F37I 0.41 deleterious(0.01) benign(0.059) TCGA-NH-A5IV-01 10 1089897 1089897 T C IDI1 Intron 0.35 TCGA-NH-A5IV-01 10 111624966 111624966 C T XPNPEP1 Silent p.T659T 0.39 TCGA-NH-A5IV-01 10 11207585 11207585 G A CELF2 Missense_Mutation p.G71R 0.35 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 10 114168255 114168255 G A ACSL5 Missense_Mutation p.A226T 0.31 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 10 114170366 114170366 G A ACSL5 Missense_Mutation p.V313I 0.34 tolerated(1) benign(0.003) TCGA-NH-A5IV-01 10 114575226 114575226 C T VTI1A 3'UTR 0.44 TCGA-NH-A5IV-01 10 114911500 114911500 A - TCF7L2 Frame_Shift_Del p.K341Rfs*10 0.31 TCGA-NH-A5IV-01 10 115377236 115377236 A T NRAP Missense_Mutation p.I984N 0.30 tolerated(0.35) probably_damaging(1) TCGA-NH-A5IV-01 10 115383344 115383344 G A NRAP Missense_Mutation p.R801C 0.38 deleterious(0) possibly_damaging(0.485) TCGA-NH-A5IV-01 10 115401164 115401164 C T NRAP Missense_Mutation p.R428H 0.13 tolerated(0.43) probably_damaging(0.999) TCGA-NH-A5IV-01 10 118897556 118897556 T C VAX1 Silent p.K4K 0.42 TCGA-NH-A5IV-01 10 119003745 119003745 G A SLC18A2 Missense_Mutation p.V129M 0.47 deleterious(0.03) probably_damaging(0.978) TCGA-NH-A5IV-01 10 11911625 11911625 C T PROSER2 Silent p.R176R 0.43 TCGA-NH-A5IV-01 10 121336156 121336156 C A TIAL1 Missense_Mutation p.G340V 0.36 deleterious(0) possibly_damaging(0.792) TCGA-NH-A5IV-01 10 121411194 121411194 G A BAG3 Missense_Mutation p.A3T 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-NH-A5IV-01 10 121551532 121551532 G A INPP5F Missense_Mutation p.R199Q 0.38 tolerated(0.67) benign(0.004) TCGA-NH-A5IV-01 10 124402642 124402642 G A DMBT1 Missense_Mutation p.V2324M 0.51 deleterious(0.03) probably_damaging(0.942) TCGA-NH-A5IV-01 10 124402659 124402659 C T DMBT1 Silent p.Y2329Y 0.30 TCGA-NH-A5IV-01 10 124920053 124920053 G A BUB3 Missense_Mutation p.R183H 0.36 deleterious(0) possibly_damaging(0.823) TCGA-NH-A5IV-01 10 124924459 124924485 TAATTCTTTTGATACAGAGAAGGGTCT AATTCTTTTGATACAGAGAAGGGCC BUB3 3'UTR 0.17 TCGA-NH-A5IV-01 10 125447486 125447486 G - GPR26 Frame_Shift_Del p.V277Cfs*33 0.31 TCGA-NH-A5IV-01 10 125771945 125771945 C T CHST15 Missense_Mutation p.V467I 0.33 tolerated(0.12) possibly_damaging(0.493) TCGA-NH-A5IV-01 10 127349598 127349598 G T TEX36 Missense_Mutation p.L86I 0.40 deleterious(0.02) benign(0.225) TCGA-NH-A5IV-01 10 127412422 127412422 G A EDRF1 Missense_Mutation p.V143M 0.41 deleterious(0) possibly_damaging(0.903) TCGA-NH-A5IV-01 10 127424344 127424344 C T EDRF1 Silent p.P543P 0.41 TCGA-NH-A5IV-01 10 127677690 127677690 C T FANK1 Intron 0.25 TCGA-NH-A5IV-01 10 128973627 128973627 C T FAM196A Missense_Mutation p.E345K 0.37 tolerated(0.13) possibly_damaging(0.779) TCGA-NH-A5IV-01 10 128974501 128974501 G A FAM196A Silent p.C53C 0.12 TCGA-NH-A5IV-01 10 13364881 13364881 G A SEPHS1 Silent p.C306C 0.33 TCGA-NH-A5IV-01 10 133769269 133769270 GA - PPP2R2D Frame_Shift_Del p.S360Qfs*17 0.29 TCGA-NH-A5IV-01 10 134188762 134188762 C T LRRC27 3'UTR 0.47 TCGA-NH-A5IV-01 10 134218255 134218255 C - PWWP2B Frame_Shift_Del p.P86Lfs*100 0.23 TCGA-NH-A5IV-01 10 134621940 134621940 G A TTC40 Silent p.S2711S 0.05 TCGA-NH-A5IV-01 10 134673971 134673974 TCTT - TTC40 Frame_Shift_Del p.E1715Dfs*11 0.35 TCGA-NH-A5IV-01 10 134736005 134736005 C A TTC40 Missense_Mutation p.K488N 0.37 deleterious(0.01) possibly_damaging(0.72) TCGA-NH-A5IV-01 10 134942673 134942673 C - GPR123 Frame_Shift_Del p.R449Afs*88 0.26 TCGA-NH-A5IV-01 10 134980832 134980832 C T KNDC1 Intron 0.46 TCGA-NH-A5IV-01 10 134996853 134996853 C T KNDC1 Silent p.H122H 0.30 TCGA-NH-A5IV-01 10 135186785 135186785 G A ECHS1 Missense_Mutation p.P18L 0.35 tolerated(0.74) benign(0.001) TCGA-NH-A5IV-01 10 135342020 135342020 C T CYP2E1 Silent p.Y71Y 0.25 TCGA-NH-A5IV-01 10 1405707 1405707 G A ADARB2 Missense_Mutation p.A198V 0.12 tolerated(0.09) probably_damaging(0.992) TCGA-NH-A5IV-01 10 14890796 14890796 A - HSPA14 Frame_Shift_Del p.N95Mfs*8 0.26 TCGA-NH-A5IV-01 10 15103848 15103848 T - OLAH Frame_Shift_Del p.F151Lfs*15 0.26 TCGA-NH-A5IV-01 10 15154953 15154953 C T NMT2 Missense_Mutation p.G394S 0.40 tolerated(0.07) benign(0.356) TCGA-NH-A5IV-01 10 15254971 15254971 C A FAM171A1 Missense_Mutation p.K872N 0.42 deleterious(0) benign(0.04) TCGA-NH-A5IV-01 10 15255960 15255960 G A FAM171A1 Nonsense_Mutation p.R543* 0.36 TCGA-NH-A5IV-01 10 15714719 15714719 T C ITGA8 Missense_Mutation p.I236V 0.16 deleterious(0.04) benign(0.033) TCGA-NH-A5IV-01 10 17875764 17875764 C T MRC1L1 Missense_Mutation p.A243V 0.44 probably_damaging(1) TCGA-NH-A5IV-01 10 22607080 22607080 T - COMMD3 Frame_Shift_Del p.C101Afs*11 0.10 TCGA-NH-A5IV-01 10 25197611 25197611 G A PRTFDC1 Intron 0.30 TCGA-NH-A5IV-01 10 26462815 26462815 G T MYO3A Missense_Mutation p.G1208W 0.37 tolerated_low_confidence(0.15) possibly_damaging(0.566) TCGA-NH-A5IV-01 10 27454334 27454334 A - MASTL Frame_Shift_Del p.N228Ifs*28 0.33 TCGA-NH-A5IV-01 10 28971450 28971450 C A BAMBI 3'UTR 0.46 TCGA-NH-A5IV-01 10 29822330 29822330 G A SVIL Silent p.L322L 0.46 TCGA-NH-A5IV-01 10 30317789 30317789 G A KIAA1462 Missense_Mutation p.R430W 0.21 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 10 33018277 33018277 A - C10ORF68 Frame_Shift_Del p.K242Rfs*30 0.35 TCGA-NH-A5IV-01 10 35299242 35299242 C T CUL2 Silent p.A764A 0.08 TCGA-NH-A5IV-01 10 35338635 35338635 C T CUL2 Missense_Mutation p.R180Q 0.46 tolerated(0.52) benign(0.122) TCGA-NH-A5IV-01 10 35854955 35854955 G A CCNY Missense_Mutation p.E251K 0.36 tolerated(0.09) probably_damaging(0.998) TCGA-NH-A5IV-01 10 429983 429983 C T DIP2C Silent p.A620A 0.09 TCGA-NH-A5IV-01 10 43883374 43883375 - T HNRNPF 5'UTR 0.18 TCGA-NH-A5IV-01 10 45907693 45907693 G A ALOX5 Silent p.K162K 0.37 TCGA-NH-A5IV-01 10 46281055 46281055 C T FAM21C Silent p.G929G 0.04 TCGA-NH-A5IV-01 10 465046 465046 G A DIP2C Missense_Mutation p.A233V 0.24 tolerated(0.63) benign(0.017) TCGA-NH-A5IV-01 10 48373723 48373723 T A ZNF488 3'UTR 0.42 TCGA-NH-A5IV-01 10 4882000 4882000 G A AKR1E2 Missense_Mutation p.R221H 0.38 deleterious(0.02) possibly_damaging(0.848) TCGA-NH-A5IV-01 10 49658543 49658543 C T ARHGAP22 Silent p.L559L 0.43 TCGA-NH-A5IV-01 10 55582948 55582948 A G PCDH15 Missense_Mutation p.F1515S 0.44 deleterious_low_confidence(0.01) benign(0.25) TCGA-NH-A5IV-01 10 6143285 6143285 C T RBM17 Nonsense_Mutation p.R59* 0.34 TCGA-NH-A5IV-01 10 61832027 61832027 G A ANK3 Missense_Mutation p.S2871L 0.36 benign(0.216) TCGA-NH-A5IV-01 10 62671216 62671216 G A RHOBTB1 Missense_Mutation p.R29C 0.45 tolerated(0.1) probably_damaging(0.999) TCGA-NH-A5IV-01 10 63170258 63170258 G A TMEM26 Missense_Mutation p.A310V 0.40 deleterious(0.04) benign(0.013) TCGA-NH-A5IV-01 10 63852249 63852249 G A ARID5B Silent p.A1009A 0.10 TCGA-NH-A5IV-01 10 64415302 64415302 G A ZNF365 Intron 0.42 TCGA-NH-A5IV-01 10 68139000 68139000 C T CTNNA3 Missense_Mutation p.A548T 0.31 deleterious(0.03) unknown(0) TCGA-NH-A5IV-01 10 72500905 72500905 C T ADAMTS14 Silent p.Y640Y 0.42 TCGA-NH-A5IV-01 10 73551035 73551035 C T CDH23 5'Flank 0.34 TCGA-NH-A5IV-01 10 73767317 73767317 G - CHST3 Frame_Shift_Del p.G178Afs*38 0.28 TCGA-NH-A5IV-01 10 73767581 73767581 C T CHST3 Silent p.C264C 0.38 TCGA-NH-A5IV-01 10 7409695 7409695 C T SFMBT2 Missense_Mutation p.D118N 0.15 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 10 75056793 75056793 C T TTC18 Intron 0.36 TCGA-NH-A5IV-01 10 75407589 75407589 G - SYNPO2L Frame_Shift_Del p.S608Afs*70 0.31 TCGA-NH-A5IV-01 10 75415799 75415799 C - SYNPO2L 5'UTR 0.37 TCGA-NH-A5IV-01 10 75532407 75532408 - C FUT11 Frame_Shift_Ins p.R107Pfs*169 0.20 TCGA-NH-A5IV-01 10 75552177 75552177 G A ZSWIM8 Missense_Mutation p.S627N 0.15 tolerated_low_confidence(0.21) benign(0.038) TCGA-NH-A5IV-01 10 75552371 75552371 C T ZSWIM8 Silent p.L692L 0.40 TCGA-NH-A5IV-01 10 75673418 75673418 G A PLAU Silent p.A194A 0.09 TCGA-NH-A5IV-01 10 7618557 7618557 G A ITIH5 Missense_Mutation p.R613C 0.35 deleterious(0) possibly_damaging(0.663) TCGA-NH-A5IV-01 10 7762912 7762912 A G ITIH2 Missense_Mutation p.K242E 0.46 tolerated(0.11) benign(0.101) TCGA-NH-A5IV-01 10 79397251 79397251 A C KCNMA1 Silent p.S50S 0.18 TCGA-NH-A5IV-01 10 79781622 79781622 T - POLR3A Frame_Shift_Del p.K348Nfs*33 0.15 TCGA-NH-A5IV-01 10 8100437 8100437 G A GATA3 Silent p.S137S 0.32 TCGA-NH-A5IV-01 10 81113493 81113493 C T PPIF Silent p.H173H 0.38 TCGA-NH-A5IV-01 10 81275226 81275226 T - EIF5AL1 3'UTR 0.09 TCGA-NH-A5IV-01 10 83635784 83635784 G A NRG3 Missense_Mutation p.A230T 0.53 tolerated(0.44) benign(0.024) TCGA-NH-A5IV-01 10 85982055 85982055 G A LRIT2 Missense_Mutation p.P425L 0.11 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 10 85992636 85992636 C T LRIT1 Missense_Mutation p.G307S 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 10 88446828 88446828 C T LDB3 Missense_Mutation p.A231V 0.38 deleterious(0.03) possibly_damaging(0.655) TCGA-NH-A5IV-01 10 88469709 88469709 C T LDB3 Missense_Mutation p.P383L 0.40 tolerated(0.15) benign(0.016) TCGA-NH-A5IV-01 10 88768727 88768727 C - RP11-96C23.10 3'Flank 0.27 TCGA-NH-A5IV-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.27 TCGA-NH-A5IV-01 10 91098538 91098538 T C IFIT3 Silent p.I42I 0.33 TCGA-NH-A5IV-01 10 91353003 91353003 G A PANK1 Missense_Mutation p.T521I 0.38 deleterious(0.02) probably_damaging(0.924) TCGA-NH-A5IV-01 10 91477454 91477454 G A KIF20B Missense_Mutation p.V416I 0.14 deleterious(0.01) benign(0.357) TCGA-NH-A5IV-01 10 91514406 91514406 T - KIF20B Frame_Shift_Del p.F1455Lfs*10 0.29 TCGA-NH-A5IV-01 10 93031399 93031399 G A PCGF5 Missense_Mutation p.R223Q 0.43 tolerated(0.33) benign(0.001) TCGA-NH-A5IV-01 10 93038244 93038244 G T PCGF5 3'UTR 0.44 TCGA-NH-A5IV-01 10 94733949 94733950 - T EXOC6 Frame_Shift_Ins p.L640Ffs*39 0.25 TCGA-NH-A5IV-01 10 95066540 95066540 C T MYOF 3'UTR 0.55 TCGA-NH-A5IV-01 10 95720196 95720196 G A PIPSL RNA 0.43 TCGA-NH-A5IV-01 10 96306228 96306229 AG - HELLS Frame_Shift_Del p.E45Afs*13 0.20 TCGA-NH-A5IV-01 10 96745804 96745804 A G CYP2C9 Silent p.L388L 0.42 TCGA-NH-A5IV-01 10 97023708 97023708 C T PDLIM1 Missense_Mutation p.G149D 0.33 deleterious(0.02) possibly_damaging(0.493) TCGA-NH-A5IV-01 10 97446918 97446918 T G TCTN3 Splice_Site p.X246_splice 0.33 TCGA-NH-A5IV-01 10 97684135 97684135 A - C10orf131 Frame_Shift_Del p.I48Ffs*43 0.27 TCGA-NH-A5IV-01 10 97916176 97916176 C T ZNF518A RNA 0.38 TCGA-NH-A5IV-01 10 97917631 97917633 TCT - ZNF518A RNA 0.35 TCGA-NH-A5IV-01 10 97922978 97922978 T - ZNF518A RNA 0.30 TCGA-NH-A5IV-01 10 98714861 98714861 G T LCOR Nonsense_Mutation p.E162* 0.11 TCGA-NH-A5IV-01 10 99052413 99052413 C T ARHGAP19 5'UTR 0.12 TCGA-NH-A5IV-01 11 1000475 1000475 C - AP2A2 Frame_Shift_Del p.P669Lfs*67 0.45 TCGA-NH-A5IV-01 11 100847545 100847545 G T ARHGAP42 Splice_Site p.X746_splice 0.35 TCGA-NH-A5IV-01 11 100998542 100998542 C T PGR Silent p.G420G 0.55 TCGA-NH-A5IV-01 11 1026401 1026401 G - MUC6 Frame_Shift_Del p.E825Rfs*87 0.25 TCGA-NH-A5IV-01 11 102826055 102826055 G A MMP13 Silent p.C96C 0.08 TCGA-NH-A5IV-01 11 103040868 103040868 T C DYNC2H1 Missense_Mutation p.L1667P 0.16 probably_damaging(1) TCGA-NH-A5IV-01 11 104825710 104825710 T - CASP4 Frame_Shift_Del p.K9Sfs*27 0.26 TCGA-NH-A5IV-01 11 104874011 104874011 T - CASP5 Frame_Shift_Del p.N191Ifs*8 0.48 TCGA-NH-A5IV-01 11 105836690 105836690 G A GRIA4 Intron 0.34 TCGA-NH-A5IV-01 11 10597783 10597783 C T MRVI1 3'UTR 0.26 TCGA-NH-A5IV-01 11 10626011 10626011 G A MRVI1 Missense_Mutation p.R562C 0.37 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 11 107326471 107326471 C T CWF19L2 Missense_Mutation p.R46H 0.36 tolerated(0.07) benign(0.031) TCGA-NH-A5IV-01 11 1095812 1095812 G A MUC2 Missense_Mutation p.G2108D 0.58 unknown(0) TCGA-NH-A5IV-01 11 1098655 1098655 G A MUC2 Missense_Mutation p.C2342Y 0.40 unknown(0) TCGA-NH-A5IV-01 11 111594744 111594744 C T SIK2 Missense_Mutation p.A891V 0.36 tolerated_low_confidence(0.2) benign(0.002) TCGA-NH-A5IV-01 11 111845782 111845782 A - DIXDC1 Intron 0.36 TCGA-NH-A5IV-01 11 112131151 112131151 G A PLET1 Silent p.Y54Y 0.47 TCGA-NH-A5IV-01 11 113105864 113105864 C T NCAM1 Silent p.S650S 0.26 TCGA-NH-A5IV-01 11 113848618 113848618 G A HTR3A Missense_Mutation p.V71I 0.30 tolerated(0.07) possibly_damaging(0.715) TCGA-NH-A5IV-01 11 1159325 1159325 C T MUC5AC Silent p.C434C 0.47 TCGA-NH-A5IV-01 11 116691662 116691662 G T APOA4 Missense_Mutation p.P371H 0.47 deleterious(0) probably_damaging(0.98) TCGA-NH-A5IV-01 11 117089217 117089217 G A PCSK7 Missense_Mutation p.P500L 0.44 tolerated(0.09) benign(0.032) TCGA-NH-A5IV-01 11 117153836 117153836 A G RNF214 Silent p.P652P 0.37 TCGA-NH-A5IV-01 11 118402960 118402960 G - TMEM25 Frame_Shift_Del p.P58Lfs*23 0.29 TCGA-NH-A5IV-01 11 118454011 118454011 C T ARCN1 Nonsense_Mutation p.Q129* 0.13 TCGA-NH-A5IV-01 11 118468489 118468489 A G ARCN1 Missense_Mutation p.T437A 0.46 tolerated(0.39) benign(0.005) TCGA-NH-A5IV-01 11 118764608 118764608 A G CXCR5 Missense_Mutation p.T119A 0.44 tolerated(0.17) benign(0.014) TCGA-NH-A5IV-01 11 118770031 118770031 G - BCL9L Frame_Shift_Del p.P1198Lfs*5 0.17 TCGA-NH-A5IV-01 11 118827649 118827649 C T UPK2 Silent p.L45L 0.16 TCGA-NH-A5IV-01 11 119004965 119004965 A G HINFP Silent p.G437G 0.07 TCGA-NH-A5IV-01 11 119050611 119050611 G - NLRX1 Frame_Shift_Del p.L630Ffs*10 0.29 TCGA-NH-A5IV-01 11 120099746 120099746 G A OAF Silent p.T239T 0.34 TCGA-NH-A5IV-01 11 121008483 121008483 T C TECTA Missense_Mutation p.S1099P 0.25 tolerated(0.12) possibly_damaging(0.558) TCGA-NH-A5IV-01 11 122526825 122526825 C - UBASH3B Frame_Shift_Del p.R25Gfs*76 0.21 TCGA-NH-A5IV-01 11 123065635 123065637 AGG - CLMP In_Frame_Del p.L9del 0.31 TCGA-NH-A5IV-01 11 123483488 123483488 T C GRAMD1B Missense_Mutation p.Y504H 0.50 deleterious(0) probably_damaging(0.914) TCGA-NH-A5IV-01 11 124180320 124180320 G T OR8D1 Missense_Mutation p.L115M 0.42 deleterious(0) probably_damaging(0.965) TCGA-NH-A5IV-01 11 124626471 124626471 G A ESAM Silent p.G139G 0.33 TCGA-NH-A5IV-01 11 124738793 124738793 C T ROBO3 Missense_Mutation p.R86C 0.27 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 11 1260177 1260178 TC - MUC5B Frame_Shift_Del p.F1125Lfs*31 0.28 TCGA-NH-A5IV-01 11 1263036 1263037 - C MUC5B Frame_Shift_Ins p.A1645Gfs*130 0.31 TCGA-NH-A5IV-01 11 1266190 1266190 G A MUC5B Missense_Mutation p.A2694T 0.39 unknown(0) TCGA-NH-A5IV-01 11 1269689 1269689 C T MUC5B Missense_Mutation p.A3860V 0.07 unknown(0) TCGA-NH-A5IV-01 11 1276673 1276673 C T MUC5B Silent p.S5317S 0.33 TCGA-NH-A5IV-01 11 128781258 128781258 C T KCNJ5 Silent p.R30R 0.47 TCGA-NH-A5IV-01 11 133805537 133805537 G A IGSF9B Silent p.S314S 0.42 TCGA-NH-A5IV-01 11 134252681 134252681 C A B3GAT1 Missense_Mutation p.G281C 0.34 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 11 14264928 14264928 G A SPON1 RNA 0.36 TCGA-NH-A5IV-01 11 18290743 18290743 G A SAA1 Silent p.G31G 0.29 TCGA-NH-A5IV-01 11 18737225 18737225 G A IGSF22 Missense_Mutation p.R429C 0.55 tolerated(0.12) benign(0.024) TCGA-NH-A5IV-01 11 1904668 1904668 G A LSP1 Missense_Mutation p.E254K 0.35 deleterious_low_confidence(0.05) benign(0.135) TCGA-NH-A5IV-01 11 20125260 20125260 C T NAV2 Missense_Mutation p.H2271Y 0.39 deleterious(0.01) probably_damaging(0.956) TCGA-NH-A5IV-01 11 20404819 20404820 - A HTATIP2 3'UTR 0.45 TCGA-NH-A5IV-01 11 209848 209848 C T RIC8A Silent p.L192L 0.45 TCGA-NH-A5IV-01 11 233199 233199 G T SIRT3 Missense_Mutation p.L164M 0.35 deleterious(0) probably_damaging(0.989) TCGA-NH-A5IV-01 11 2428391 2428391 G A TRPM5 Missense_Mutation p.R1026W 0.34 deleterious(0.03) benign(0.03) TCGA-NH-A5IV-01 11 26463656 26463657 - A ANO3 Frame_Shift_Ins p.V81Sfs*2 0.28 TCGA-NH-A5IV-01 11 26581309 26581309 T - ANO3 Frame_Shift_Del p.F478Lfs*20 0.25 TCGA-NH-A5IV-01 11 320602 320602 C T IFITM3 Missense_Mutation p.C71Y 0.09 deleterious(0.01) benign(0.078) TCGA-NH-A5IV-01 11 32636066 32636066 G A CCDC73 Missense_Mutation p.P600S 0.36 tolerated(0.08) benign(0.36) TCGA-NH-A5IV-01 11 33117910 33117910 T - CSTF3 Frame_Shift_Del p.K439Nfs*33 0.27 TCGA-NH-A5IV-01 11 34904906 34904906 T - APIP Frame_Shift_Del p.T203Hfs*22 0.27 TCGA-NH-A5IV-01 11 34938166 34938166 G A PDHX 5'UTR 0.30 TCGA-NH-A5IV-01 11 35641405 35641405 C - FJX1 Frame_Shift_Del p.H409Tfs*102 0.21 TCGA-NH-A5IV-01 11 36595653 36595653 G A RAG1 Missense_Mutation p.A267T 0.28 tolerated_low_confidence(1) benign(0) TCGA-NH-A5IV-01 11 36597644 36597644 G A RAG1 Silent p.R930R 0.10 TCGA-NH-A5IV-01 11 3691021 3691021 C T CHRNA10 Intron 0.36 TCGA-NH-A5IV-01 11 381796 381796 C T B4GALNT4 3'UTR 0.45 TCGA-NH-A5IV-01 11 44331279 44331281 GCT - ALX4 In_Frame_Del p.Q111del 0.24 TCGA-NH-A5IV-01 11 44331339 44331339 G A ALX4 Missense_Mutation p.P92S 0.50 tolerated_low_confidence(0.26) benign(0.16) TCGA-NH-A5IV-01 11 44958377 44958377 C T TP53I11 Missense_Mutation p.R104H 0.40 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 11 45924069 45924069 C - MAPK8IP1 Frame_Shift_Del p.P252Lfs*24 0.30 TCGA-NH-A5IV-01 11 4592686 4592686 A G C11orf40 Silent p.H207H 0.08 TCGA-NH-A5IV-01 11 45931636 45931636 G A PEX16 3'UTR 0.38 TCGA-NH-A5IV-01 11 46329447 46329447 G A CREB3L1 Missense_Mutation p.V138M 0.33 tolerated(0.25) benign(0.003) TCGA-NH-A5IV-01 11 46332655 46332655 G A CREB3L1 Missense_Mutation p.R223H 0.44 tolerated(0.14) benign(0.097) TCGA-NH-A5IV-01 11 46393274 46393275 - C DGKZ Frame_Shift_Ins p.K449Qfs*17 0.24 TCGA-NH-A5IV-01 11 46394564 46394564 C T DGKZ Silent p.N601N 0.35 TCGA-NH-A5IV-01 11 46744739 46744739 C T F2 Missense_Mutation p.A109V 0.33 tolerated(0.31) benign(0.05) TCGA-NH-A5IV-01 11 46750941 46750941 C T F2 Missense_Mutation p.A495V 0.23 tolerated(0.1) benign(0.005) TCGA-NH-A5IV-01 11 46829633 46829633 T G CKAP5 Missense_Mutation p.N309T 0.38 deleterious(0.04) benign(0.089) TCGA-NH-A5IV-01 11 47359019 47359019 T C MYBPC3 Missense_Mutation p.Y842C 0.14 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 11 47800685 47800685 C T NUP160 Missense_Mutation p.R1428Q 0.30 deleterious(0.05) benign(0.078) TCGA-NH-A5IV-01 11 48347449 48347449 A - OR4C3 Frame_Shift_Del p.N321Mfs*3 0.09 TCGA-NH-A5IV-01 11 5068181 5068181 G A OR52J3 Silent p.V142V 0.32 TCGA-NH-A5IV-01 11 5153679 5153679 A - OR52A5 Frame_Shift_Del p.L65Wfs*20 0.30 TCGA-NH-A5IV-01 11 55110740 55110740 A - OR4A16 Frame_Shift_Del p.T24Hfs*12 0.27 TCGA-NH-A5IV-01 11 5528796 5528796 C T UBQLN3 3'UTR 0.33 TCGA-NH-A5IV-01 11 55371700 55371700 G A OR4C11 Silent p.S50S 0.33 TCGA-NH-A5IV-01 11 55703457 55703457 C A OR5I1 Missense_Mutation p.R140S 0.41 tolerated(0.14) benign(0.036) TCGA-NH-A5IV-01 11 55873047 55873047 T - OR8H2 Frame_Shift_Del p.F178Sfs*8 0.27 TCGA-NH-A5IV-01 11 56468424 56468424 C A OR9G1 Silent p.A187A 0.27 TCGA-NH-A5IV-01 11 57099948 57099948 G A SSRP1 Missense_Mutation p.P261S 0.35 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 11 5717765 5717765 A - TRIM22 Frame_Shift_Del p.K103Nfs*31 0.28 TCGA-NH-A5IV-01 11 57576829 57576829 A G CTNND1 Missense_Mutation p.I776V 0.37 tolerated(1) benign(0) TCGA-NH-A5IV-01 11 57576883 57576883 A - CTNND1 Frame_Shift_Del p.K795Sfs*13 0.27 TCGA-NH-A5IV-01 11 58710740 58710740 C T GLYATL1 5'UTR 0.39 TCGA-NH-A5IV-01 11 58949461 58949461 G A DTX4 Missense_Mutation p.R154H 0.24 deleterious(0.03) possibly_damaging(0.484) TCGA-NH-A5IV-01 11 58959625 58959625 C T DTX4 Nonsense_Mutation p.Q426* 0.25 TCGA-NH-A5IV-01 11 59368841 59368841 T C OSBP Missense_Mutation p.K347E 0.33 tolerated(0.2) possibly_damaging(0.638) TCGA-NH-A5IV-01 11 59807900 59807900 C A OOSP2 5'UTR 0.11 TCGA-NH-A5IV-01 11 60075605 60075605 C A MS4A4A Missense_Mutation p.S225Y 0.47 deleterious(0) possibly_damaging(0.719) TCGA-NH-A5IV-01 11 60296922 60296922 T C MS4A13 Missense_Mutation p.C131R 0.35 deleterious(0) probably_damaging(0.992) TCGA-NH-A5IV-01 11 60689259 60689259 C A TMEM109 Silent p.A118A 0.06 TCGA-NH-A5IV-01 11 608827 608827 C - PHRF1 Frame_Shift_Del p.T1125Pfs*73 0.29 TCGA-NH-A5IV-01 11 61015979 61015979 G A PGA5 Missense_Mutation p.E249K 0.35 tolerated(0.09) benign(0.184) TCGA-NH-A5IV-01 11 61188921 61188921 A G CPSF7 Missense_Mutation p.Y115H 0.37 deleterious(0.04) probably_damaging(0.991) TCGA-NH-A5IV-01 11 61487634 61487634 G A DAGLA Missense_Mutation p.G3R 0.30 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 11 61488230 61488230 G A DAGLA Missense_Mutation p.G59S 0.44 tolerated(0.39) probably_damaging(0.999) TCGA-NH-A5IV-01 11 61503750 61503750 C T DAGLA Silent p.V433V 0.57 TCGA-NH-A5IV-01 11 61505219 61505219 C T DAGLA Silent p.L525L 0.42 TCGA-NH-A5IV-01 11 61511799 61511799 G A DAGLA Silent p.S989S 0.46 TCGA-NH-A5IV-01 11 61543896 61543896 G A MYRF Silent p.P497P 0.34 TCGA-NH-A5IV-01 11 61916252 61916252 G A INCENP Silent p.E775E 0.47 TCGA-NH-A5IV-01 11 619724 619724 G A CDHR5 Missense_Mutation p.P379L 0.48 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 11 6232725 6232725 A G FAM160A2 3'UTR 0.36 TCGA-NH-A5IV-01 11 62361225 62361228 CACT - MTA2 3'UTR 0.33 TCGA-NH-A5IV-01 11 62437189 62437189 A G C11orf48 Silent p.H79H 0.05 TCGA-NH-A5IV-01 11 62649529 62649530 AA - SLC3A2 Frame_Shift_Del p.K301Efs*15 0.32 TCGA-NH-A5IV-01 11 62782134 62782134 C T SLC22A8 Nonsense_Mutation p.W99* 0.38 TCGA-NH-A5IV-01 11 63448972 63448972 A T RTN3 5'UTR 0.38 TCGA-NH-A5IV-01 11 64329818 64329818 G A SLC22A11 Silent p.A244A 0.32 TCGA-NH-A5IV-01 11 64337217 64337217 G A SLC22A11 Silent p.L492L 0.36 TCGA-NH-A5IV-01 11 64359094 64359094 G A SLC22A12 Missense_Mutation p.M22I 0.40 tolerated(0.26) benign(0.001) TCGA-NH-A5IV-01 11 64368228 64368228 C T SLC22A12 Silent p.G472G 0.16 TCGA-NH-A5IV-01 11 64434727 64434727 C T NRXN2 Missense_Mutation p.R598Q 0.33 deleterious(0) benign(0.068) TCGA-NH-A5IV-01 11 64521078 64521078 C T PYGM Missense_Mutation p.R439H 0.41 tolerated(0.06) possibly_damaging(0.671) TCGA-NH-A5IV-01 11 64533497 64533497 G - SF1 Intron 0.17 TCGA-NH-A5IV-01 11 64666128 64666128 G A ATG2A Nonsense_Mutation p.R1551* 0.39 TCGA-NH-A5IV-01 11 64897378 64897378 G - SYVN1 Frame_Shift_Del p.P473Qfs*12 0.12 TCGA-NH-A5IV-01 11 64898136 64898136 G - SYVN1 Frame_Shift_Del p.N368Tfs*117 0.44 TCGA-NH-A5IV-01 11 65113772 65113772 A G DPF2 Missense_Mutation p.Y320C 0.42 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 11 65172366 65172366 G A FRMD8 Missense_Mutation p.C368Y 0.45 tolerated(0.26) benign(0.152) TCGA-NH-A5IV-01 11 65408551 65408551 C T SIPA1 Silent p.S53S 0.41 TCGA-NH-A5IV-01 11 65414060 65414060 G A SIPA1 Missense_Mutation p.G519S 0.25 tolerated(0.08) benign(0.026) TCGA-NH-A5IV-01 11 65826382 65826382 C T SF3B2 Missense_Mutation p.R350W 0.34 deleterious(0.01) possibly_damaging(0.617) TCGA-NH-A5IV-01 11 65838058 65838058 C A PACS1 Missense_Mutation p.P34Q 0.44 deleterious_low_confidence(0) unknown(0) TCGA-NH-A5IV-01 11 6592338 6592338 C T DNHD1 Silent p.R4532R 0.33 TCGA-NH-A5IV-01 11 66052907 66052907 G A YIF1A Missense_Mutation p.R196C 0.34 deleterious(0.03) possibly_damaging(0.67) TCGA-NH-A5IV-01 11 66082482 66082482 C - CD248 Frame_Shift_Del p.E673Rfs*132 0.26 TCGA-NH-A5IV-01 11 66243320 66243320 C T PELI3 Silent p.H364H 0.36 TCGA-NH-A5IV-01 11 66288874 66288874 C T BBS1 Intron 0.36 TCGA-NH-A5IV-01 11 66373280 66373280 C T CCS Missense_Mutation p.A260V 0.40 deleterious(0.02) benign(0.141) TCGA-NH-A5IV-01 11 66454566 66454566 G A SPTBN2 Silent p.S2265S 0.08 TCGA-NH-A5IV-01 11 66625485 66625485 C T LRFN4 Silent p.R90R 0.43 TCGA-NH-A5IV-01 11 67177103 67177103 C T TBC1D10C Missense_Mutation p.R407W 0.43 deleterious(0) probably_damaging(0.92) TCGA-NH-A5IV-01 11 67203565 67203565 G - PTPRCAP Frame_Shift_Del p.P87Qfs*91 0.09 TCGA-NH-A5IV-01 11 67203607 67203607 G A PTPRCAP Missense_Mutation p.A73V 0.06 tolerated(0.14) possibly_damaging(0.873) TCGA-NH-A5IV-01 11 67287586 67287586 G T CABP2 Missense_Mutation p.P142H 0.27 deleterious(0) possibly_damaging(0.887) TCGA-NH-A5IV-01 11 68153809 68153809 C T LRP5 Silent p.A347A 0.36 TCGA-NH-A5IV-01 11 68206060 68206060 G A LRP5 Missense_Mutation p.G1420R 0.44 tolerated(0.26) benign(0.361) TCGA-NH-A5IV-01 11 68517973 68517973 C T MTL5 Silent p.A52A 0.36 TCGA-NH-A5IV-01 11 69625121 69625121 G A FGF3 Silent p.H224H 0.08 TCGA-NH-A5IV-01 11 7083733 7083733 G A NLRP14 Missense_Mutation p.G992R 0.36 tolerated(0.06) benign(0.085) TCGA-NH-A5IV-01 11 7111237 7111237 C T RBMXL2 Missense_Mutation p.R296W 0.40 deleterious(0.02) benign(0.016) TCGA-NH-A5IV-01 11 71907341 71907341 G A FOLR1 3'UTR 0.30 TCGA-NH-A5IV-01 11 71939255 71939255 G T INPPL1 Silent p.T68T 0.32 TCGA-NH-A5IV-01 11 71948748 71948748 C - INPPL1 Frame_Shift_Del p.R1156Gfs*46 0.31 TCGA-NH-A5IV-01 11 72549767 72549767 A - FCHSD2 3'UTR 0.22 TCGA-NH-A5IV-01 11 7273409 7273409 G - SYT9 5'UTR 0.20 TCGA-NH-A5IV-01 11 73429699 73429699 A G RAB6A Intron 0.17 TCGA-NH-A5IV-01 11 73676057 73676057 A - DNAJB13 Frame_Shift_Del p.I159Lfs*8 0.28 TCGA-NH-A5IV-01 11 73689004 73689004 G A UCP2 Silent p.R88R 0.37 TCGA-NH-A5IV-01 11 73829295 73829295 T C C2CD3 Missense_Mutation p.R500G 0.42 tolerated(0.08) benign(0.005) TCGA-NH-A5IV-01 11 74336609 74336610 AA - POLD3 Frame_Shift_Del p.R300Gfs*8 0.39 TCGA-NH-A5IV-01 11 74651915 74651915 G A XRRA1 Silent p.F3F 0.41 TCGA-NH-A5IV-01 11 75154325 75154325 G A GDPD5 Silent p.D268D 0.14 TCGA-NH-A5IV-01 11 75277837 75277837 G A SERPINH1 Missense_Mutation p.R148H 0.45 deleterious(0.01) possibly_damaging(0.617) TCGA-NH-A5IV-01 11 76751261 76751261 C T B3GNT6 Silent p.D222D 0.48 TCGA-NH-A5IV-01 11 76829356 76829356 C T CAPN5 Silent p.G375G 0.48 TCGA-NH-A5IV-01 11 7690934 7690934 G A CYB5R2 Silent p.I60I 0.30 TCGA-NH-A5IV-01 11 76914151 76914151 C T MYO7A Nonsense_Mutation p.R1739* 0.50 TCGA-NH-A5IV-01 11 77090366 77090366 T - PAK1 Frame_Shift_Del p.N120Tfs*24 0.22 TCGA-NH-A5IV-01 11 78368952 78368952 A - TENM4 3'UTR 0.42 TCGA-NH-A5IV-01 11 78369801 78369801 G A TENM4 Missense_Mutation p.R2538W 0.23 deleterious(0) possibly_damaging(0.696) TCGA-NH-A5IV-01 11 78387330 78387330 G A TENM4 Missense_Mutation p.A1788V 0.22 deleterious(0.05) benign(0.354) TCGA-NH-A5IV-01 11 829517 829517 G - EFCAB4A Frame_Shift_Del p.V147Wfs*11 0.24 TCGA-NH-A5IV-01 11 82989835 82989835 C T CCDC90B Silent p.A86A 0.43 TCGA-NH-A5IV-01 11 83344258 83344258 C T DLG2 Missense_Mutation p.V646I 0.51 tolerated(0.11) probably_damaging(0.977) TCGA-NH-A5IV-01 11 85375844 85375844 C T CREBZF Missense_Mutation p.A26T 0.08 deleterious_low_confidence(0.04) benign(0.01) TCGA-NH-A5IV-01 11 8640965 8640965 G A TRIM66 Missense_Mutation p.R1142C 0.30 deleterious(0.02) probably_damaging(0.925) TCGA-NH-A5IV-01 11 8939016 8939016 T - AKIP1 Intron 0.25 TCGA-NH-A5IV-01 11 89896814 89896814 T - NAALAD2 Intron 0.23 TCGA-NH-A5IV-01 11 9225344 9225344 C T DENND5A Missense_Mutation p.C271Y 0.07 tolerated(0.08) probably_damaging(0.986) TCGA-NH-A5IV-01 11 92600252 92600252 C T FAT3 Missense_Mutation p.R4002C 0.49 probably_damaging(0.995) TCGA-NH-A5IV-01 11 93469105 93469105 T C TAF1D 3'UTR 0.33 TCGA-NH-A5IV-01 11 9446755 9446755 A - IPO7 Frame_Shift_Del p.D430Mfs*6 0.14 TCGA-NH-A5IV-01 11 94533058 94533058 C A AMOTL1 Silent p.P234P 0.09 TCGA-NH-A5IV-01 11 95568406 95568406 A G MTMR2 3'UTR 0.44 TCGA-NH-A5IV-01 11 99690476 99690476 C T CNTN5 Missense_Mutation p.S86L 0.24 deleterious(0.05) benign(0.051) TCGA-NH-A5IV-01 12 100200245 100200245 C T ANKS1B Silent p.A202A 0.42 TCGA-NH-A5IV-01 12 100551382 100551382 G - AC010203.1 5'Flank 0.25 TCGA-NH-A5IV-01 12 10124281 10124281 A G CLEC12A Missense_Mutation p.E39G 0.07 tolerated(0.36) benign(0.009) TCGA-NH-A5IV-01 12 1017797 1017797 G A WNK1 Missense_Mutation p.A2330T 0.42 tolerated(0.34) benign(0.041) TCGA-NH-A5IV-01 12 102057295 102057295 A G MYBPC1 Silent p.A746A 0.37 TCGA-NH-A5IV-01 12 102811605 102811605 T - IGF1 Frame_Shift_Del p.G194Efs*8 0.10 TCGA-NH-A5IV-01 12 103696133 103696133 G A C12orf42 Missense_Mutation p.A279V 0.47 deleterious(0) probably_damaging(0.994) TCGA-NH-A5IV-01 12 104102233 104102233 C A STAB2 Missense_Mutation p.H1403N 0.23 tolerated(0.46) benign(0.105) TCGA-NH-A5IV-01 12 104388280 104388280 C A GLT8D2 Splice_Site p.X201_splice 0.35 TCGA-NH-A5IV-01 12 105515967 105515967 A G KIAA1033 Missense_Mutation p.K246R 0.39 tolerated(0.17) probably_damaging(0.968) TCGA-NH-A5IV-01 12 105591599 105591599 G T APPL2 Silent p.A338A 0.37 TCGA-NH-A5IV-01 12 106480642 106480642 A G NUAK1 Missense_Mutation p.I128T 0.37 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 12 107155159 107155159 C T RFX4 Missense_Mutation p.T716M 0.12 tolerated_low_confidence(0.07) benign(0.316) TCGA-NH-A5IV-01 12 108138408 108138408 C T PRDM4 Missense_Mutation p.R436Q 0.07 tolerated(0.06) possibly_damaging(0.482) TCGA-NH-A5IV-01 12 109539742 109539742 T C UNG Silent p.H157H 0.07 TCGA-NH-A5IV-01 12 109629666 109629666 T C ACACB Silent p.D770D 0.47 TCGA-NH-A5IV-01 12 109678987 109678987 C T ACACB Silent p.T1641T 0.42 TCGA-NH-A5IV-01 12 109689891 109689891 G T ACACB Missense_Mutation p.R1944M 0.38 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 12 109689928 109689928 C T ACACB Silent p.H1956H 0.17 TCGA-NH-A5IV-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.34 TCGA-NH-A5IV-01 12 110221558 110221558 G A TRPV4 Silent p.R828R 0.40 TCGA-NH-A5IV-01 12 110641712 110641712 G T IFT81 Missense_Mutation p.S534I 0.39 deleterious(0.01) benign(0.201) TCGA-NH-A5IV-01 12 111082879 111082879 A C TCTN1 Missense_Mutation p.Q480P 0.39 deleterious(0) probably_damaging(0.97) TCGA-NH-A5IV-01 12 111749974 111749974 G T CUX2 Missense_Mutation p.Q657H 0.38 deleterious(0.03) benign(0.414) TCGA-NH-A5IV-01 12 111800705 111800705 C T FAM109A Missense_Mutation p.R189H 0.46 tolerated(0.15) benign(0.003) TCGA-NH-A5IV-01 12 112280574 112280574 G A MAPKAPK5 Splice_Site p.X12_splice 0.12 TCGA-NH-A5IV-01 12 112608994 112608996 GAA - HECTD4 In_Frame_Del p.F3807del 0.33 TCGA-NH-A5IV-01 12 112638548 112638548 G A HECTD4 Nonsense_Mutation p.R2675* 0.37 TCGA-NH-A5IV-01 12 112919947 112919947 G A PTPN11 Missense_Mutation p.V388I 0.38 tolerated(0.36) benign(0.149) TCGA-NH-A5IV-01 12 113645623 113645623 C T IQCD Missense_Mutation p.E117K 0.41 tolerated(0.05) possibly_damaging(0.58) TCGA-NH-A5IV-01 12 113706583 113706583 G A TPCN1 Missense_Mutation p.V261M 0.27 deleterious(0) possibly_damaging(0.777) TCGA-NH-A5IV-01 12 117287206 117287206 C T RNFT2 Missense_Mutation p.R430C 0.29 tolerated(0.05) possibly_damaging(0.745) TCGA-NH-A5IV-01 12 118590182 118590182 G A TAOK3 Silent p.C795C 0.32 TCGA-NH-A5IV-01 12 118637013 118637013 C T TAOK3 Missense_Mutation p.S346N 0.34 tolerated(0.06) possibly_damaging(0.77) TCGA-NH-A5IV-01 12 120135793 120135793 C T CIT Missense_Mutation p.R1897H 0.37 tolerated(0.39) benign(0.016) TCGA-NH-A5IV-01 12 120594327 120594329 CCT - GCN1L1 In_Frame_Del p.E1083del 0.41 TCGA-NH-A5IV-01 12 120751014 120751015 - T SIRT4 3'UTR 0.37 TCGA-NH-A5IV-01 12 121003283 121003283 C T RNF10 Silent p.R612R 0.46 TCGA-NH-A5IV-01 12 121605383 121605383 C T P2RX7 Silent p.D279D 0.35 TCGA-NH-A5IV-01 12 121678565 121678565 G - CAMKK2 Frame_Shift_Del p.A569Pfs*72 0.24 TCGA-NH-A5IV-01 12 121861407 121861407 C - RNF34 3'UTR 0.29 TCGA-NH-A5IV-01 12 122242658 122242658 C - SETD1B Frame_Shift_Del p.H8Tfs*27 0.40 TCGA-NH-A5IV-01 12 122260495 122260495 C T SETD1B Missense_Mutation p.P1294L 0.33 unknown(0) TCGA-NH-A5IV-01 12 122268062 122268062 A G SETD1B Missense_Mutation p.T1897A 0.40 unknown(0) TCGA-NH-A5IV-01 12 122284822 122284822 G A HPD Silent p.N259N 0.42 TCGA-NH-A5IV-01 12 122958194 122958194 G A ZCCHC8 Silent p.S658S 0.43 TCGA-NH-A5IV-01 12 122962457 122962457 C A ZCCHC8 Missense_Mutation p.G426C 0.16 tolerated(0.21) benign(0.002) TCGA-NH-A5IV-01 12 123414609 123414609 C T ABCB9 Missense_Mutation p.R717H 0.44 tolerated(0.1) benign(0.006) TCGA-NH-A5IV-01 12 123474456 123474456 C T PITPNM2 Missense_Mutation p.R870H 0.27 tolerated(0.07) benign(0.005) TCGA-NH-A5IV-01 12 123498490 123498490 G A PITPNM2 Missense_Mutation p.H60Y 0.05 deleterious(0.03) probably_damaging(0.996) TCGA-NH-A5IV-01 12 123950385 123950387 AAG - SNRNP35 In_Frame_Del p.K105del 0.29 TCGA-NH-A5IV-01 12 12397386 12397386 G A LRP6 Nonsense_Mutation p.Q87* 0.09 TCGA-NH-A5IV-01 12 124330187 124330187 G A DNAH10 Missense_Mutation p.A1683T 0.57 benign(0.091) TCGA-NH-A5IV-01 12 124409716 124409716 C T DNAH10 Silent p.A3844A 0.10 TCGA-NH-A5IV-01 12 124826599 124826599 C T NCOR2 Missense_Mutation p.R1653Q 0.12 probably_damaging(0.955) TCGA-NH-A5IV-01 12 12673903 12673903 C T DUSP16 Missense_Mutation p.E44K 0.34 tolerated(0.11) benign(0.107) TCGA-NH-A5IV-01 12 128899718 128899718 G A TMEM132C Missense_Mutation p.R176Q 0.34 tolerated(0.26) benign(0.024) TCGA-NH-A5IV-01 12 130184593 130184593 C T TMEM132D Missense_Mutation p.A244T 0.07 tolerated(0.41) benign(0.003) TCGA-NH-A5IV-01 12 130649551 130649551 A G FZD10 3'UTR 0.42 TCGA-NH-A5IV-01 12 130926488 130926488 T C RIMBP2 Missense_Mutation p.K453R 0.13 tolerated(0.36) benign(0.008) TCGA-NH-A5IV-01 12 132445169 132445169 A G EP400 Missense_Mutation p.H2R 0.35 unknown(0) TCGA-NH-A5IV-01 12 132839111 132839111 C T GALNT9 Missense_Mutation p.V174M 0.44 deleterious(0.01) benign(0.21) TCGA-NH-A5IV-01 12 133245024 133245024 G - POLE Frame_Shift_Del p.L698Cfs*94 0.30 TCGA-NH-A5IV-01 12 133294353 133294353 C T PGAM5 Missense_Mutation p.P185L 0.32 deleterious(0) probably_damaging(0.987) TCGA-NH-A5IV-01 12 133350899 133350899 T C GOLGA3 Missense_Mutation p.E1384G 0.33 deleterious(0) possibly_damaging(0.897) TCGA-NH-A5IV-01 12 133428216 133428216 C T CHFR Missense_Mutation p.A506T 0.41 tolerated(0.08) benign(0.251) TCGA-NH-A5IV-01 12 133682795 133682795 G A ZNF140 Missense_Mutation p.R311H 0.42 tolerated(0.18) benign(0.028) TCGA-NH-A5IV-01 12 1345990 1345991 - A ERC1 Frame_Shift_Ins p.K806Efs*29 0.43 TCGA-NH-A5IV-01 12 13716273 13716273 C T GRIN2B Missense_Mutation p.R1300Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 12 15793652 15793652 A G EPS8 Silent p.Y602Y 0.49 TCGA-NH-A5IV-01 12 18534782 18534782 G A PIK3C2G Missense_Mutation p.D614N 0.32 tolerated(0.93) possibly_damaging(0.899) TCGA-NH-A5IV-01 12 21422458 21422459 - A SLCO1A2 3'UTR 0.29 TCGA-NH-A5IV-01 12 22635669 22635669 C T C2CD5 Missense_Mutation p.R520H 0.37 deleterious(0) possibly_damaging(0.781) TCGA-NH-A5IV-01 12 24048789 24048789 C G SOX5 Missense_Mutation p.V70L 0.42 tolerated_low_confidence(1) benign(0.002) TCGA-NH-A5IV-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.30 deleterious(0.03) possibly_damaging(0.876) TCGA-NH-A5IV-01 12 2789680 2789680 T C CACNA1C Intron 0.31 TCGA-NH-A5IV-01 12 2800527 2800527 T G CACNA1C 3'Flank 0.57 TCGA-NH-A5IV-01 12 29604449 29604449 G A OVCH1 Missense_Mutation p.R862W 0.47 deleterious(0.04) benign(0.409) TCGA-NH-A5IV-01 12 30906387 30906388 - G CAPRIN2 Frame_Shift_Ins p.L104Pfs*16 0.22 TCGA-NH-A5IV-01 12 31435386 31435386 G A FAM60A 3'UTR 0.55 TCGA-NH-A5IV-01 12 32908066 32908066 A G YARS2 Missense_Mutation p.L248P 0.15 deleterious(0) probably_damaging(0.971) TCGA-NH-A5IV-01 12 34179308 34179308 T - ALG10 Frame_Shift_Del p.S296Hfs*23 0.27 TCGA-NH-A5IV-01 12 38714275 38714275 G A ALG10B Missense_Mutation p.A228T 0.35 tolerated(0.46) benign(0.002) TCGA-NH-A5IV-01 12 38714383 38714383 T C ALG10B Missense_Mutation p.F264L 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 12 39734025 39734025 T C KIF21A Missense_Mutation p.Q751R 0.36 tolerated(0.63) benign(0.034) TCGA-NH-A5IV-01 12 40758733 40758733 C G LRRK2 Missense_Mutation p.A2424G 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A5IV-01 12 40961485 40961485 G A MUC19 3'UTR 0.33 TCGA-NH-A5IV-01 12 42839881 42839881 C T PPHLN1 Missense_Mutation p.P380L 0.37 tolerated_low_confidence(0.1) benign(0) TCGA-NH-A5IV-01 12 43925890 43925890 G A ADAMTS20 Nonsense_Mutation p.Q188* 0.38 TCGA-NH-A5IV-01 12 43944883 43944883 G A ADAMTS20 Silent p.T94T 0.36 TCGA-NH-A5IV-01 12 44148706 44148706 T C PUS7L Missense_Mutation p.T115A 0.39 tolerated(0.55) benign(0.001) TCGA-NH-A5IV-01 12 4488590 4488590 C T FGF23 Silent p.L53L 0.10 TCGA-NH-A5IV-01 12 45566877 45566878 - T PLEKHA8P1 RNA 0.33 TCGA-NH-A5IV-01 12 47172402 47172402 C T SLC38A4 Missense_Mutation p.R292H 0.38 tolerated(0.19) benign(0) TCGA-NH-A5IV-01 12 4737474 4737474 A G AKAP3 Silent p.S198S 0.38 TCGA-NH-A5IV-01 12 48192638 48192638 C T HDAC7 Missense_Mutation p.R63H 0.40 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 12 49437541 49437541 G A KMT2D Silent p.L1782L 0.10 TCGA-NH-A5IV-01 12 49444378 49444378 G - KMT2D Frame_Shift_Del p.P998Lfs*2 0.28 TCGA-NH-A5IV-01 12 49498315 49498315 A - LMBR1L Frame_Shift_Del p.L118Sfs*39 0.22 TCGA-NH-A5IV-01 12 49951234 49951234 C T KCNH3 Missense_Mutation p.P917L 0.32 tolerated(0.24) benign(0.001) TCGA-NH-A5IV-01 12 5021221 5021221 C T KCNA1 Missense_Mutation p.T226M 0.38 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 12 50471118 50471118 C T ASIC1 Silent p.D227D 0.44 TCGA-NH-A5IV-01 12 50831621 50831621 G T LARP4 Missense_Mutation p.E213D 0.31 deleterious(0) possibly_damaging(0.859) TCGA-NH-A5IV-01 12 51252715 51252715 A - TMPRSS12 Frame_Shift_Del p.A180Qfs*2 0.29 TCGA-NH-A5IV-01 12 5154383 5154383 T C KCNA5 Missense_Mutation p.M357T 0.12 deleterious(0) probably_damaging(0.99) TCGA-NH-A5IV-01 12 52282493 52282494 - G ANKRD33 Frame_Shift_Ins p.A98Gfs*10 0.18 TCGA-NH-A5IV-01 12 52309067 52309067 G A ACVRL1 Silent p.T277T 0.35 TCGA-NH-A5IV-01 12 52309153 52309153 C T ACVRL1 Missense_Mutation p.A306V 0.40 tolerated(0.26) benign(0.017) TCGA-NH-A5IV-01 12 52682165 52682165 G T KRT81 Missense_Mutation p.L239M 0.30 deleterious(0.01) possibly_damaging(0.724) TCGA-NH-A5IV-01 12 52695848 52695848 G A KRT86 Missense_Mutation p.V50M 0.31 tolerated(0.05) benign(0.226) TCGA-NH-A5IV-01 12 52862881 52862881 T A KRT6C Missense_Mutation p.T554S 0.46 tolerated(0.11) unknown(0) TCGA-NH-A5IV-01 12 52886578 52886578 G - KRT6A Frame_Shift_Del p.P132Lfs*14 0.08 TCGA-NH-A5IV-01 12 52941748 52941748 C T KRT71 Missense_Mutation p.A333T 0.39 tolerated(1) possibly_damaging(0.861) TCGA-NH-A5IV-01 12 53002195 53002195 C T KRT73 Missense_Mutation p.A470T 0.46 tolerated(0.45) benign(0.001) TCGA-NH-A5IV-01 12 53011912 53011912 G A KRT73 Missense_Mutation p.R133W 0.35 tolerated(0.05) benign(0.061) TCGA-NH-A5IV-01 12 53038951 53038951 G T KRT2 Missense_Mutation p.S591Y 0.38 deleterious_low_confidence(0) unknown(0) TCGA-NH-A5IV-01 12 53227784 53227785 - C KRT79 Frame_Shift_Ins p.F88Lfs*45 0.32 TCGA-NH-A5IV-01 12 53566164 53566164 C T CSAD Missense_Mutation p.G131R 0.48 deleterious(0) probably_damaging(0.988) TCGA-NH-A5IV-01 12 53585712 53585712 C T ITGB7 Silent p.S749S 0.12 TCGA-NH-A5IV-01 12 53590523 53590523 C T ITGB7 Missense_Mutation p.R219Q 0.40 deleterious(0.03) probably_damaging(0.997) TCGA-NH-A5IV-01 12 53880958 53880958 G - MAP3K12 Frame_Shift_Del p.P73Lfs*62 0.15 TCGA-NH-A5IV-01 12 54396318 54396318 A G HOXC9 Missense_Mutation p.M215V 0.37 deleterious(0.01) possibly_damaging(0.893) TCGA-NH-A5IV-01 12 54448124 54448124 A - HOXC4 Frame_Shift_Del p.I142Ffs*6 0.28 TCGA-NH-A5IV-01 12 54943553 54943553 G A PDE1B 5'UTR 0.25 TCGA-NH-A5IV-01 12 55356751 55356751 T C TESPA1 Missense_Mutation p.S311G 0.47 deleterious(0) possibly_damaging(0.893) TCGA-NH-A5IV-01 12 55759063 55759063 A G OR6C75 Missense_Mutation p.M57V 0.13 deleterious_low_confidence(0.02) probably_damaging(0.937) TCGA-NH-A5IV-01 12 56143688 56143688 C - GDF11 3'UTR 0.25 TCGA-NH-A5IV-01 12 56330318 56330318 A G DGKA Missense_Mutation p.S11G 0.47 tolerated(0.31) benign(0) TCGA-NH-A5IV-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.32 deleterious(0.05) possibly_damaging(0.789) TCGA-NH-A5IV-01 12 56515350 56515350 C T ZC3H10 Missense_Mutation p.A335V 0.09 tolerated(0.08) benign(0.054) TCGA-NH-A5IV-01 12 56536450 56536451 - G ESYT1 Frame_Shift_Ins p.P954Tfs*19 0.30 TCGA-NH-A5IV-01 12 57390280 57390280 A G GPR182 3'UTR 0.42 TCGA-NH-A5IV-01 12 57585237 57585237 C T LRP1 Silent p.R2457R 0.12 TCGA-NH-A5IV-01 12 57592297 57592297 G A LRP1 Missense_Mutation p.G3174S 0.45 probably_damaging(1) TCGA-NH-A5IV-01 12 57594239 57594239 C T LRP1 Silent p.N3343N 0.38 TCGA-NH-A5IV-01 12 57651779 57651779 C T R3HDM2 Missense_Mutation p.A801T 0.52 tolerated(0.06) benign(0.015) TCGA-NH-A5IV-01 12 57865128 57865128 C - GLI1 Frame_Shift_Del p.P870Lfs*76 0.30 TCGA-NH-A5IV-01 12 57866433 57866434 - G ARHGAP9 Frame_Shift_Ins p.H688Pfs*20 0.25 TCGA-NH-A5IV-01 12 57920933 57920934 - C MBD6 Frame_Shift_Ins p.T672Yfs*45 0.49 TCGA-NH-A5IV-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.26 TCGA-NH-A5IV-01 12 60168856 60168856 T - SLC16A7 Frame_Shift_Del p.F262Lfs*39 0.29 TCGA-NH-A5IV-01 12 60173523 60173523 T - SLC16A7 3'UTR 0.11 TCGA-NH-A5IV-01 12 64174847 64174847 A - TMEM5 Frame_Shift_Del p.N75Mfs*14 0.25 TCGA-NH-A5IV-01 12 65563524 65563524 G A LEMD3 Missense_Mutation p.E50K 0.31 deleterious(0.01) probably_damaging(0.931) TCGA-NH-A5IV-01 12 6637448 6637448 C T NCAPD2 Missense_Mutation p.R1085C 0.44 deleterious(0.01) possibly_damaging(0.825) TCGA-NH-A5IV-01 12 6657974 6657974 C - IFFO1 Frame_Shift_Del p.R367Gfs*47 0.29 TCGA-NH-A5IV-01 12 6703702 6703702 C T CHD4 Missense_Mutation p.D746N 0.40 tolerated(0.09) benign(0.066) TCGA-NH-A5IV-01 12 6787447 6787447 C T ZNF384 Missense_Mutation p.G178R 0.40 tolerated(0.33) probably_damaging(0.942) TCGA-NH-A5IV-01 12 6879360 6879360 G A PTMS Silent p.A78A 0.62 TCGA-NH-A5IV-01 12 6956039 6956039 A G GNB3 Missense_Mutation p.S334G 0.39 tolerated(0.16) benign(0.027) TCGA-NH-A5IV-01 12 7069253 7069253 C A PTPN6 Missense_Mutation p.L478M 0.32 deleterious(0.03) probably_damaging(0.966) TCGA-NH-A5IV-01 12 70737928 70737928 C T CNOT2 Silent p.G437G 0.38 TCGA-NH-A5IV-01 12 71977624 71977624 G A LGR5 Missense_Mutation p.V612M 0.41 tolerated(0.26) benign(0.149) TCGA-NH-A5IV-01 12 7254564 7254564 G A C1RL Silent p.R140R 0.32 TCGA-NH-A5IV-01 12 72893404 72893404 G A TRHDE Missense_Mutation p.A526T 0.39 tolerated(0.34) probably_damaging(0.965) TCGA-NH-A5IV-01 12 75785019 75785019 C T GLIPR1L2 Silent p.N41N 0.13 TCGA-NH-A5IV-01 12 77158041 77158041 A T ZDHHC17 Missense_Mutation p.T9S 0.28 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-NH-A5IV-01 12 7842749 7842749 G A GDF3 Missense_Mutation p.R274W 0.32 deleterious(0) probably_damaging(0.956) TCGA-NH-A5IV-01 12 80658951 80658951 G A OTOGL Missense_Mutation p.G720S 0.49 tolerated(0.07) probably_damaging(0.99) TCGA-NH-A5IV-01 12 8197383 8197383 G T FOXJ2 Missense_Mutation p.V216L 0.28 tolerated(0.14) benign(0.079) TCGA-NH-A5IV-01 12 8200737 8200738 - C FOXJ2 Frame_Shift_Ins p.V362Cfs*52 0.22 TCGA-NH-A5IV-01 12 8330058 8330058 G C ZNF705A Missense_Mutation p.S261T 0.28 deleterious(0) benign(0.066) TCGA-NH-A5IV-01 12 88487621 88487621 T - CEP290 Frame_Shift_Del p.M1079Cfs*9 0.17 TCGA-NH-A5IV-01 12 8995883 8995883 C T A2ML1 Nonsense_Mutation p.Q468* 0.38 TCGA-NH-A5IV-01 12 90028937 90028938 CA - ATP2B1 Frame_Shift_Del p.V166Gfs*8 0.32 TCGA-NH-A5IV-01 12 91502611 91502611 C T LUM Missense_Mutation p.S49N 0.36 deleterious(0.01) benign(0.371) TCGA-NH-A5IV-01 12 9162021 9162021 G T KLRG1 Splice_Site p.X153_splice 0.37 TCGA-NH-A5IV-01 12 9309800 9309800 T C PZP Missense_Mutation p.N1174S 0.36 tolerated(0.28) benign(0.015) TCGA-NH-A5IV-01 12 93788465 93788465 C T NUDT4 Silent p.G60G 0.09 TCGA-NH-A5IV-01 12 95927482 95927483 - T USP44 Frame_Shift_Ins p.I184Nfs*19 0.24 TCGA-NH-A5IV-01 12 96350676 96350676 C T AMDHD1 Missense_Mutation p.R175C 0.43 deleterious(0) probably_damaging(0.953) TCGA-NH-A5IV-01 12 992587 992588 AG - WNK1 Frame_Shift_Del p.E1175Vfs*11 0.38 TCGA-NH-A5IV-01 12 994030 994030 G A WNK1 Missense_Mutation p.A1354T 0.30 tolerated(0.63) benign(0.046) TCGA-NH-A5IV-01 13 103385334 103385334 G A CCDC168 Missense_Mutation p.L1276F 0.39 tolerated(0.14) unknown(0) TCGA-NH-A5IV-01 13 108518338 108518338 C - FAM155A Frame_Shift_Del p.D203Tfs*5 0.36 TCGA-NH-A5IV-01 13 108885142 108885142 G A ABHD13 3'UTR 0.31 TCGA-NH-A5IV-01 13 109793373 109793373 C - MYO16 Frame_Shift_Del p.A1585Rfs*18 0.35 TCGA-NH-A5IV-01 13 111102725 111102725 C T COL4A2 Silent p.Y421Y 0.41 TCGA-NH-A5IV-01 13 111371848 111371848 G A ING1 Missense_Mutation p.E280K 0.50 tolerated(0.35) possibly_damaging(0.787) TCGA-NH-A5IV-01 13 111927956 111927956 C T ARHGEF7 Silent p.G471G 0.36 TCGA-NH-A5IV-01 13 113510361 113510361 G A ATP11A Missense_Mutation p.V794M 0.41 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 13 114525021 114525021 C T GAS6 Missense_Mutation p.E598K 0.38 tolerated(0.26) probably_damaging(0.963) TCGA-NH-A5IV-01 13 20325510 20325510 G A PSPC1 Missense_Mutation p.R290C 0.37 deleterious(0) possibly_damaging(0.836) TCGA-NH-A5IV-01 13 20399239 20399239 T - ZMYM5 Frame_Shift_Del p.K463Rfs*11 0.28 TCGA-NH-A5IV-01 13 20411658 20411658 A G ZMYM5 3'UTR 0.32 TCGA-NH-A5IV-01 13 20717072 20717073 CT - GJA3 Frame_Shift_Del p.S119Pfs*206 0.43 TCGA-NH-A5IV-01 13 20797227 20797227 C T GJB6 Silent p.S131S 0.38 TCGA-NH-A5IV-01 13 21205180 21205180 A - IFT88 Frame_Shift_Del p.K453Rfs*5 0.21 TCGA-NH-A5IV-01 13 21237718 21237718 A - IFT88 Frame_Shift_Del p.M728* 0.25 TCGA-NH-A5IV-01 13 21557772 21557772 G A LATS2 Silent p.H691H 0.39 TCGA-NH-A5IV-01 13 21562401 21562401 G A LATS2 Silent p.Y506Y 0.09 TCGA-NH-A5IV-01 13 21563168 21563168 C T LATS2 Missense_Mutation p.A251T 0.39 tolerated_low_confidence(0.43) benign(0.002) TCGA-NH-A5IV-01 13 22033194 22033194 C A ZDHHC20 Silent p.V39V 0.35 TCGA-NH-A5IV-01 13 23911953 23911953 G A SACS Missense_Mutation p.S2021F 0.35 probably_damaging(0.996) TCGA-NH-A5IV-01 13 23912627 23912627 A G SACS Silent p.A1796A 0.19 TCGA-NH-A5IV-01 13 25672306 25672306 A - PABPC3 3'UTR 0.37 TCGA-NH-A5IV-01 13 26788739 26788739 A G RNF6 Missense_Mutation p.L427P 0.41 tolerated(0.33) possibly_damaging(0.723) TCGA-NH-A5IV-01 13 27847511 27847512 - G RASL11A Frame_Shift_Ins p.E205Gfs*56 0.32 TCGA-NH-A5IV-01 13 28367788 28367788 C T GSX1 Silent p.F166F 0.07 TCGA-NH-A5IV-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.07 TCGA-NH-A5IV-01 13 28771383 28771383 G A PAN3 Missense_Mutation p.R251Q 0.50 deleterious_low_confidence(0.01) benign(0.178) TCGA-NH-A5IV-01 13 29004213 29004213 C A FLT1 Missense_Mutation p.K360N 0.13 tolerated(0.19) benign(0.098) TCGA-NH-A5IV-01 13 29233294 29233295 AG - POMP 5'UTR 0.43 TCGA-NH-A5IV-01 13 29286849 29286849 G A SLC46A3 Missense_Mutation p.A343V 0.35 deleterious(0.01) benign(0.136) TCGA-NH-A5IV-01 13 33017181 33017181 T A N4BP2L2 Missense_Mutation p.N498I 0.39 deleterious(0) possibly_damaging(0.778) TCGA-NH-A5IV-01 13 37678549 37678549 C T CSNK1A1L Missense_Mutation p.R282H 0.44 deleterious_low_confidence(0) benign(0.057) TCGA-NH-A5IV-01 13 37679639 37679639 C A CSNK1A1L 5'UTR 0.33 TCGA-NH-A5IV-01 13 38210881 38210881 G A TRPC4 3'UTR 0.24 TCGA-NH-A5IV-01 13 41791099 41791099 G A MTRF1 3'UTR 0.09 TCGA-NH-A5IV-01 13 42729884 42729884 G A DGKH Missense_Mutation p.V191M 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A5IV-01 13 43361020 43361020 G A FAM216B Splice_Site p.X74_splice 0.37 TCGA-NH-A5IV-01 13 43681415 43681429 AGAGGGGACTTCGAA GAGGGGACTTC DNAJC15 3'UTR 0.33 TCGA-NH-A5IV-01 13 46801919 46801919 A T LRRC63 Missense_Mutation p.I120F 0.04 tolerated(0.13) benign(0.055) TCGA-NH-A5IV-01 13 46808398 46808398 G A LRRC63 Missense_Mutation p.A302T 0.10 tolerated(0.14) possibly_damaging(0.621) TCGA-NH-A5IV-01 13 47303076 47303076 G A LRCH1 Missense_Mutation p.R655H 0.36 tolerated(0.07) probably_damaging(1) TCGA-NH-A5IV-01 13 48651247 48651247 A G MED4 3'UTR 0.43 TCGA-NH-A5IV-01 13 49580361 49580361 A T FNDC3A Missense_Mutation p.Q12L 0.40 tolerated(0.07) benign(0.011) TCGA-NH-A5IV-01 13 50589223 50589268 AAAAAAAAATATATATATATATATATATATATATATATATATATAT - TRIM13 3'Flank 0.50 TCGA-NH-A5IV-01 13 50590197 50590197 A G KCNRG Missense_Mutation p.T190A 0.44 tolerated(0.71) benign(0) TCGA-NH-A5IV-01 13 51939747 51939747 A - INTS6 3'UTR 0.26 TCGA-NH-A5IV-01 13 52026679 52026679 C G INTS6 5'UTR 0.55 TCGA-NH-A5IV-01 13 52952467 52952467 C T THSD1 Silent p.T546T 0.36 TCGA-NH-A5IV-01 13 52990183 52990183 C T VPS36 Missense_Mutation p.V346M 0.41 deleterious(0.04) possibly_damaging(0.836) TCGA-NH-A5IV-01 13 52997748 52997748 C A VPS36 Silent p.T267T 0.38 TCGA-NH-A5IV-01 13 53418529 53418529 T - PCDH8 3'UTR 0.32 TCGA-NH-A5IV-01 13 53421441 53421441 A G PCDH8 Silent p.A377A 0.27 TCGA-NH-A5IV-01 13 61989197 61989197 T G PCDH20 Missense_Mutation p.H32P 0.29 tolerated_low_confidence(0.21) benign(0) TCGA-NH-A5IV-01 13 73336078 73336078 A - DIS3 Frame_Shift_Del p.F775Lfs*30 0.29 TCGA-NH-A5IV-01 13 77640159 77640159 T C MYCBP2 Missense_Mutation p.I4136V 0.57 possibly_damaging(0.722) TCGA-NH-A5IV-01 13 77667342 77667342 A G MYCBP2 Missense_Mutation p.V3404A 0.05 probably_damaging(0.966) TCGA-NH-A5IV-01 13 77700550 77700550 G A MYCBP2 Missense_Mutation p.T2558M 0.48 probably_damaging(0.984) TCGA-NH-A5IV-01 13 80910970 80910970 A G SPRY2 Missense_Mutation p.C291R 0.38 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 13 84455772 84455772 G - SLITRK1 5'UTR 0.29 TCGA-NH-A5IV-01 13 84456329 84456329 G A SLITRK1 5'UTR 0.41 TCGA-NH-A5IV-01 13 88327960 88327960 G C SLITRK5 Missense_Mutation p.G106A 0.39 deleterious(0.05) benign(0.235) TCGA-NH-A5IV-01 13 88330033 88330033 A C SLITRK5 Missense_Mutation p.Q797P 0.25 tolerated(0.29) benign(0) TCGA-NH-A5IV-01 13 96453961 96453961 C T UGGT2 3'UTR 0.15 TCGA-NH-A5IV-01 13 99037058 99037058 G A FARP1 Missense_Mutation p.A191T 0.47 tolerated(0.47) benign(0.014) TCGA-NH-A5IV-01 14 100141991 100141991 C T HHIPL1 3'UTR 0.33 TCGA-NH-A5IV-01 14 100182196 100182196 G A CYP46A1 Missense_Mutation p.R248H 0.34 tolerated(0.15) benign(0.01) TCGA-NH-A5IV-01 14 101201215 101201215 C T DLK1 Silent p.A378A 0.62 TCGA-NH-A5IV-01 14 101350010 101350010 G A RTL1 Silent p.P372P 0.46 TCGA-NH-A5IV-01 14 102466656 102466656 G A DYNC1H1 Missense_Mutation p.V1332I 0.47 probably_damaging(0.997) TCGA-NH-A5IV-01 14 102552234 102552234 C T HSP90AA1 Missense_Mutation p.M252I 0.46 deleterious_low_confidence(0.02) benign(0.314) TCGA-NH-A5IV-01 14 102695886 102695886 A T MOK Missense_Mutation p.S364T 0.40 deleterious(0.01) benign(0.15) TCGA-NH-A5IV-01 14 102912175 102912175 C T TECPR2 Missense_Mutation p.T989M 0.45 deleterious(0) benign(0.248) TCGA-NH-A5IV-01 14 103574739 103574739 G A EXOC3L4 Missense_Mutation p.E621K 0.44 tolerated(0.07) benign(0.096) TCGA-NH-A5IV-01 14 103576493 103576493 G - EXOC3L4 Frame_Shift_Del p.G702Afs*17 0.33 TCGA-NH-A5IV-01 14 104056541 104056541 C T APOPT1 Missense_Mutation p.A180V 0.16 tolerated(0.06) benign(0.034) TCGA-NH-A5IV-01 14 104573656 104573656 C T ASPG Silent p.S469S 0.42 TCGA-NH-A5IV-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.33 TCGA-NH-A5IV-01 14 105269805 105269805 G A ZBTB42 3'UTR 0.10 TCGA-NH-A5IV-01 14 105270238 105270238 A G ZBTB42 3'UTR 0.26 TCGA-NH-A5IV-01 14 105350752 105350752 G A CEP170B Missense_Mutation p.A546T 0.26 tolerated(0.47) benign(0.005) TCGA-NH-A5IV-01 14 105351824 105351824 T C CEP170B Missense_Mutation p.L630P 0.31 tolerated(0.14) benign(0.012) TCGA-NH-A5IV-01 14 105413628 105413628 G A AHNAK2 Silent p.H2720H 0.44 TCGA-NH-A5IV-01 14 105693009 105693010 - G BRF1 Frame_Shift_Ins p.S293Lfs*15 0.12 TCGA-NH-A5IV-01 14 105716646 105716646 C T BTBD6 Silent p.D365D 0.37 TCGA-NH-A5IV-01 14 105995617 105995617 G A TMEM121 Missense_Mutation p.R149H 0.38 tolerated(0.09) benign(0.037) TCGA-NH-A5IV-01 14 106110424 106110424 G A IGHG2 Silent p.V104V 0.37 TCGA-NH-A5IV-01 14 106173620 106173620 C T IGHA1 Missense_Mutation p.G316D 0.07 deleterious(0.01) possibly_damaging(0.715) TCGA-NH-A5IV-01 14 106235617 106235617 T G IGHG3 Missense_Mutation p.N364T 0.31 deleterious(0.01) possibly_damaging(0.804) TCGA-NH-A5IV-01 14 106306822 106306822 G A IGHD Missense_Mutation p.A336V 0.30 deleterious(0.02) benign(0.341) TCGA-NH-A5IV-01 14 106320534 106320534 C T IGHM Missense_Mutation p.E426K 0.47 deleterious(0.01) probably_damaging(0.951) TCGA-NH-A5IV-01 14 19563232 19563232 T C POTEG Intron 0.61 TCGA-NH-A5IV-01 14 20848155 20848155 A G TEP1 Silent p.N1687N 0.36 TCGA-NH-A5IV-01 14 20856087 20856087 G - TEP1 Frame_Shift_Del p.L888Wfs*31 0.30 TCGA-NH-A5IV-01 14 20944729 20944729 C T PNP Missense_Mutation p.A280V 0.16 tolerated(0.16) benign(0.006) TCGA-NH-A5IV-01 14 21542717 21542717 C T ARHGEF40 Silent p.G276G 0.45 TCGA-NH-A5IV-01 14 21553011 21553013 CTC - ARHGEF40 In_Frame_Del p.L1299del 0.43 TCGA-NH-A5IV-01 14 21553988 21553988 T C ARHGEF40 Silent p.I1367I 0.38 TCGA-NH-A5IV-01 14 21560277 21560277 G A ZNF219 Silent p.G393G 0.29 TCGA-NH-A5IV-01 14 21833045 21833045 T C SUPT16H Missense_Mutation p.K392E 0.39 tolerated(0.36) benign(0.023) TCGA-NH-A5IV-01 14 21862265 21862265 G A CHD8 Missense_Mutation p.R1897W 0.37 deleterious(0) probably_damaging(0.993) TCGA-NH-A5IV-01 14 22102299 22102299 G A OR10G2 Missense_Mutation p.R234C 0.10 deleterious(0.03) benign(0.005) TCGA-NH-A5IV-01 14 23344703 23344703 G A LRP10 Silent p.L182L 0.43 TCGA-NH-A5IV-01 14 23353964 23353964 C - REM2 Frame_Shift_Del p.R64Dfs*20 0.27 TCGA-NH-A5IV-01 14 23355383 23355383 G A REM2 Missense_Mutation p.V224I 0.41 tolerated(1) benign(0.009) TCGA-NH-A5IV-01 14 23530734 23530734 G - ACIN1 Frame_Shift_Del p.P1124Rfs*106 0.26 TCGA-NH-A5IV-01 14 23567882 23567882 T A C14orf119 3'UTR 0.43 TCGA-NH-A5IV-01 14 23568017 23568017 C A C14orf119 3'UTR 0.11 TCGA-NH-A5IV-01 14 23866021 23866021 C T MYH6 Missense_Mutation p.R725H 0.52 tolerated(0.05) probably_damaging(0.984) TCGA-NH-A5IV-01 14 24529249 24529249 C T LRRC16B Missense_Mutation p.R647C 0.09 deleterious(0) probably_damaging(0.968) TCGA-NH-A5IV-01 14 24544391 24544391 A G CPNE6 Missense_Mutation p.Y228C 0.38 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 14 24619809 24619809 G - RNF31 Frame_Shift_Del p.D402Mfs*90 0.22 TCGA-NH-A5IV-01 14 24658934 24658936 AAG - TM9SF1 In_Frame_Del p.F503del 0.34 TCGA-NH-A5IV-01 14 24681028 24681030 CTT - CHMP4A In_Frame_Del p.K56del 0.29 TCGA-NH-A5IV-01 14 24702791 24702791 A G GMPR2 Missense_Mutation p.K83R 0.40 tolerated(0.5) benign(0.005) TCGA-NH-A5IV-01 14 24740424 24740424 C A RABGGTA 5'UTR 0.12 TCGA-NH-A5IV-01 14 24770829 24770829 A G NOP9 Missense_Mutation p.T237A 0.37 tolerated(1) benign(0) TCGA-NH-A5IV-01 14 24836242 24836243 TG - NFATC4 5'UTR 0.38 TCGA-NH-A5IV-01 14 24842910 24842910 C T NFATC4 Silent p.C586C 0.42 TCGA-NH-A5IV-01 14 24846079 24846079 A C NFATC4 Missense_Mutation p.E942A 0.38 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-NH-A5IV-01 14 24898094 24898094 G A CBLN3 Missense_Mutation p.A56V 0.29 deleterious(0.04) possibly_damaging(0.497) TCGA-NH-A5IV-01 14 25076579 25076579 G A GZMH Missense_Mutation p.R125W 0.07 deleterious(0.05) benign(0.055) TCGA-NH-A5IV-01 14 25103407 25103407 C T GZMB 5'UTR 0.31 TCGA-NH-A5IV-01 14 27066542 27066542 G - NOVA1 Frame_Shift_Del p.P34Lfs*19 0.27 TCGA-NH-A5IV-01 14 31604716 31604716 T C HECTD1 Missense_Mutation p.N1074D 0.42 deleterious(0.01) probably_damaging(0.91) TCGA-NH-A5IV-01 14 32562675 32562675 T - ARHGAP5 Frame_Shift_Del p.F935Lfs*5 0.28 TCGA-NH-A5IV-01 14 33292142 33292142 A G AKAP6 Missense_Mutation p.K1708R 0.39 tolerated(1) benign(0.059) TCGA-NH-A5IV-01 14 35032213 35032213 T - SNX6 3'UTR 0.30 TCGA-NH-A5IV-01 14 36005284 36005284 T C INSM2 3'UTR 0.42 TCGA-NH-A5IV-01 14 36982331 36982331 G A SFTA3 Missense_Mutation p.L10F 0.13 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-NH-A5IV-01 14 37969191 37969191 A - MIPOL1 Frame_Shift_Del p.N372Tfs*24 0.31 TCGA-NH-A5IV-01 14 38725399 38725399 C - CLEC14A 5'UTR 0.30 TCGA-NH-A5IV-01 14 45430190 45430190 G A KLHL28 Intron 0.37 TCGA-NH-A5IV-01 14 45711671 45711671 G A MIS18BP1 Nonsense_Mutation p.R237* 0.39 TCGA-NH-A5IV-01 14 47426810 47426810 C T MDGA2 Missense_Mutation p.R619Q 0.35 deleterious(0.01) possibly_damaging(0.602) TCGA-NH-A5IV-01 14 50044469 50044469 T - RPS29 3'UTR 0.30 TCGA-NH-A5IV-01 14 50256240 50256240 G A NEMF Missense_Mutation p.R891C 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 14 50550529 50550529 G A C14orf183 Missense_Mutation p.P272L 0.40 tolerated_low_confidence(0.64) possibly_damaging(0.859) TCGA-NH-A5IV-01 14 50581084 50581084 G A VCPKMT Silent p.S163S 0.43 TCGA-NH-A5IV-01 14 50581114 50581114 C A VCPKMT Missense_Mutation p.E153D 0.43 tolerated(0.14) benign(0.052) TCGA-NH-A5IV-01 14 51452819 51452819 C T TRIM9 Intron 0.52 TCGA-NH-A5IV-01 14 52495455 52495455 G A NID2 Missense_Mutation p.R839W 0.37 deleterious(0.04) possibly_damaging(0.696) TCGA-NH-A5IV-01 14 52496339 52496339 C T NID2 Missense_Mutation p.C776Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 14 55310717 55310717 A G GCH1 3'UTR 0.36 TCGA-NH-A5IV-01 14 55511766 55511766 G T SOCS4 3'UTR 0.14 TCGA-NH-A5IV-01 14 56755306 56755306 G A PELI2 Missense_Mutation p.R154Q 0.48 deleterious(0.02) possibly_damaging(0.871) TCGA-NH-A5IV-01 14 61113106 61113106 G A SIX1 Silent p.G250G 0.33 TCGA-NH-A5IV-01 14 61518563 61518564 - T SLC38A6 Frame_Shift_Ins p.L372Ffs*19 0.29 TCGA-NH-A5IV-01 14 62188361 62188361 G A HIF1A Missense_Mutation p.G145R 0.38 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 14 64066218 64066218 G A WDR89 Missense_Mutation p.A148V 0.17 tolerated(0.09) benign(0.009) TCGA-NH-A5IV-01 14 64606785 64606785 T - SYNE2 Frame_Shift_Del p.F4992Lfs*13 0.29 TCGA-NH-A5IV-01 14 64909021 64909022 - T MTHFD1 Frame_Shift_Ins p.N682* 0.26 TCGA-NH-A5IV-01 14 65008199 65008199 C T HSPA2 Missense_Mutation p.S211F 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-NH-A5IV-01 14 65239614 65239614 C A SPTB Missense_Mutation p.R1746L 0.32 deleterious(0.01) probably_damaging(1) TCGA-NH-A5IV-01 14 67610162 67610162 A G GPHN Missense_Mutation p.E611G 0.42 deleterious(0) possibly_damaging(0.874) TCGA-NH-A5IV-01 14 69387733 69387733 G A ACTN1 Silent p.I110I 0.18 TCGA-NH-A5IV-01 14 70238049 70238051 TAG - SRSF5 In_Frame_Del p.S231del 0.35 TCGA-NH-A5IV-01 14 72925042 72925042 A G RGS6 Missense_Mutation p.H100R 0.39 deleterious(0.02) possibly_damaging(0.449) TCGA-NH-A5IV-01 14 73029154 73029154 G A RGS6 Silent p.T484T 0.17 TCGA-NH-A5IV-01 14 73437490 73437490 C T ZFYVE1 3'UTR 0.30 TCGA-NH-A5IV-01 14 73437534 73437535 TG - ZFYVE1 3'UTR 0.21 TCGA-NH-A5IV-01 14 73491073 73491075 CTC - ZFYVE1 In_Frame_Del p.E48del 0.12 TCGA-NH-A5IV-01 14 73706440 73706440 C T PAPLN Intron 0.27 TCGA-NH-A5IV-01 14 74138254 74138254 G T DNAL1 Missense_Mutation p.R73M 0.40 deleterious(0) possibly_damaging(0.489) TCGA-NH-A5IV-01 14 74824919 74824919 A G VRTN Missense_Mutation p.E478G 0.43 tolerated(0.31) benign(0.005) TCGA-NH-A5IV-01 14 74976492 74976492 G T LTBP2 Silent p.A1074A 0.19 TCGA-NH-A5IV-01 14 75476047 75476047 C A EIF2B2 3'UTR 0.15 TCGA-NH-A5IV-01 14 76211450 76211451 CT - TTLL5 Frame_Shift_Del p.S433Cfs*3 0.09 TCGA-NH-A5IV-01 14 76243087 76243087 T C TTLL5 Intron 0.33 TCGA-NH-A5IV-01 14 76525477 76525477 T C IFT43 Intron 0.06 TCGA-NH-A5IV-01 14 76620670 76620670 T - GPATCH2L Intron 0.32 TCGA-NH-A5IV-01 14 77718155 77718155 T - TMEM63C Frame_Shift_Del p.S689Pfs*10 0.30 TCGA-NH-A5IV-01 14 81307038 81307038 A G CEP128 Silent p.T279T 0.36 TCGA-NH-A5IV-01 14 86093402 86093402 G A FLRT2 3'UTR 0.36 TCGA-NH-A5IV-01 14 89034468 89034468 A G ZC3H14 Silent p.L55L 0.05 TCGA-NH-A5IV-01 14 89081851 89081851 T C EML5 3'UTR 0.50 TCGA-NH-A5IV-01 14 89081975 89081975 G A EML5 3'UTR 0.36 TCGA-NH-A5IV-01 14 91647673 91647673 G A C14orf159 Missense_Mutation p.A292T 0.62 tolerated(0.16) benign(0.128) TCGA-NH-A5IV-01 14 92264172 92264172 G T TC2N Missense_Mutation p.P271H 0.43 deleterious(0.02) probably_damaging(0.954) TCGA-NH-A5IV-01 14 92471409 92471409 T - TRIP11 Frame_Shift_Del p.T971Qfs*34 0.29 TCGA-NH-A5IV-01 14 93813649 93813649 G A COX8C Missense_Mutation p.R12H 0.48 deleterious_low_confidence(0.02) benign(0.277) TCGA-NH-A5IV-01 14 94121718 94121718 T - UNC79 Frame_Shift_Del p.F2004Lfs*10 0.30 TCGA-NH-A5IV-01 14 94158179 94158179 G A UNC79 Missense_Mutation p.A2315T 0.05 tolerated(0.2) benign(0.016) TCGA-NH-A5IV-01 14 94417473 94417473 A G ASB2 Missense_Mutation p.L251P 0.42 deleterious(0.04) probably_damaging(0.925) TCGA-NH-A5IV-01 14 94419852 94419852 C T ASB2 Silent p.A160A 0.38 TCGA-NH-A5IV-01 14 94423192 94423192 C T ASB2 Silent p.S77S 0.36 TCGA-NH-A5IV-01 14 94528791 94528791 G A DDX24 Missense_Mutation p.P299S 0.45 tolerated(0.33) benign(0.065) TCGA-NH-A5IV-01 14 94756232 94756232 C A SERPINA10 Silent p.V233V 0.46 TCGA-NH-A5IV-01 14 95916425 95916425 G A SYNE3 Missense_Mutation p.A431V 0.43 tolerated(0.58) benign(0.004) TCGA-NH-A5IV-01 14 96707299 96707299 G A BDKRB2 Missense_Mutation p.V212I 0.37 tolerated(0.62) benign(0.015) TCGA-NH-A5IV-01 14 99640541 99640541 C T BCL11B Missense_Mutation p.G878S 0.31 tolerated(0.6) benign(0.024) TCGA-NH-A5IV-01 14 99640782 99640782 C T BCL11B Silent p.T797T 0.42 TCGA-NH-A5IV-01 15 100252905 100252905 C T MEF2A Nonsense_Mutation p.R477* 0.42 TCGA-NH-A5IV-01 15 100657053 100657053 G A ADAMTS17 Silent p.D629D 0.38 TCGA-NH-A5IV-01 15 100672303 100672303 C T ADAMTS17 Missense_Mutation p.G544R 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 15 101013146 101013146 C T CERS3 Missense_Mutation p.A241T 0.29 deleterious(0) probably_damaging(0.914) TCGA-NH-A5IV-01 15 101169830 101169830 C T ASB7 Missense_Mutation p.R134W 0.36 deleterious(0) probably_damaging(0.987) TCGA-NH-A5IV-01 15 101593203 101593203 G A LRRK1 Missense_Mutation p.V1256I 0.44 tolerated(0.43) benign(0.014) TCGA-NH-A5IV-01 15 102506364 102506364 C T MIR1302-11 5'Flank 0.14 TCGA-NH-A5IV-01 15 20662861 20662861 T - HERC2P3 RNA 0.22 TCGA-NH-A5IV-01 15 21071312 21071312 C T POTEB2 Missense_Mutation p.R100Q 0.10 tolerated(0.5) possibly_damaging(0.855) TCGA-NH-A5IV-01 15 23283134 23283134 C T HERC2P2 RNA 0.23 TCGA-NH-A5IV-01 15 23311417 23311417 C T HERC2P2 RNA 0.10 TCGA-NH-A5IV-01 15 23932056 23932056 G A NDN Silent p.H103H 0.33 TCGA-NH-A5IV-01 15 24921112 24921112 C - NPAP1 Frame_Shift_Del p.P34Rfs*81 0.13 TCGA-NH-A5IV-01 15 24921828 24921828 C T NPAP1 Silent p.L272L 0.45 TCGA-NH-A5IV-01 15 25584238 25584238 T - UBE3A 3'Flank 0.45 TCGA-NH-A5IV-01 15 25925095 25925095 C A ATP10A Missense_Mutation p.R1298M 0.60 deleterious(0) benign(0.003) TCGA-NH-A5IV-01 15 27216733 27216733 G A GABRG3 Silent p.A17A 0.40 TCGA-NH-A5IV-01 15 27772666 27772666 T - GABRG3 Frame_Shift_Del p.F319Lfs*2 0.25 TCGA-NH-A5IV-01 15 28996794 28996794 A - WHAMMP2 RNA 0.14 TCGA-NH-A5IV-01 15 29409479 29409479 C A APBA2 3'UTR 0.38 TCGA-NH-A5IV-01 15 29428680 29428680 C T FAM189A1 Silent p.P272P 0.32 TCGA-NH-A5IV-01 15 30018592 30018592 G A TJP1 Silent p.S801S 0.43 TCGA-NH-A5IV-01 15 30927744 30927744 G A ARHGAP11B Missense_Mutation p.V239I 0.42 tolerated_low_confidence(0.28) benign(0.002) TCGA-NH-A5IV-01 15 31293919 31293919 T - TRPM1 3'UTR 0.23 TCGA-NH-A5IV-01 15 31330343 31330343 G - TRPM1 Frame_Shift_Del p.T799Pfs*110 0.15 TCGA-NH-A5IV-01 15 32460333 32460333 G A CHRNA7 Missense_Mutation p.V424M 0.25 tolerated(0.31) benign(0.006) TCGA-NH-A5IV-01 15 34549916 34549916 A - SLC12A6 Frame_Shift_Del p.L206Yfs*28 0.32 TCGA-NH-A5IV-01 15 34647845 34647845 G - NUTM1 Frame_Shift_Del p.G519Afs*26 0.14 TCGA-NH-A5IV-01 15 34649061 34649061 T C NUTM1 Missense_Mutation p.L923P 0.45 tolerated(1) benign(0.002) TCGA-NH-A5IV-01 15 40247940 40247940 A G EIF2AK4 Silent p.K238K 0.51 TCGA-NH-A5IV-01 15 40282508 40282508 T - EIF2AK4 Frame_Shift_Del p.L856Wfs*7 0.31 TCGA-NH-A5IV-01 15 40590816 40590816 G A PLCB2 Missense_Mutation p.T315M 0.53 deleterious(0.05) benign(0.114) TCGA-NH-A5IV-01 15 40660138 40660138 C A DISP2 Missense_Mutation p.L609M 0.58 tolerated(0.23) possibly_damaging(0.756) TCGA-NH-A5IV-01 15 40750957 40750958 - C BAHD1 Frame_Shift_Ins p.S101Qfs*7 0.27 TCGA-NH-A5IV-01 15 40756131 40756131 G A BAHD1 Silent p.R629R 0.09 TCGA-NH-A5IV-01 15 41107908 41107908 G A PPP1R14D Silent p.A180A 0.30 TCGA-NH-A5IV-01 15 41275117 41275117 C T INO80 Missense_Mutation p.G1466R 0.32 deleterious(0) possibly_damaging(0.537) TCGA-NH-A5IV-01 15 41625048 41625049 TC - NUSAP1 5'Flank 0.22 TCGA-NH-A5IV-01 15 42117563 42117563 C - MAPKBP1 Frame_Shift_Del p.Q1492Rfs*33 0.26 TCGA-NH-A5IV-01 15 42147533 42147533 C T SPTBN5 Silent p.Q3104Q 0.12 TCGA-NH-A5IV-01 15 42703963 42703963 T C CAPN3 Missense_Mutation p.Y820H 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-NH-A5IV-01 15 43552354 43552354 G A TGM5 Missense_Mutation p.A111V 0.42 tolerated(1) benign(0.397) TCGA-NH-A5IV-01 15 43574757 43574757 C T TGM7 Missense_Mutation p.G356R 0.33 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 15 43678485 43678485 A G TUBGCP4 Missense_Mutation p.D324G 0.13 tolerated(0.44) benign(0.005) TCGA-NH-A5IV-01 15 44036631 44036631 C A PDIA3 5'Flank 0.37 TCGA-NH-A5IV-01 15 44581528 44581528 C A CASC4 Missense_Mutation p.L101I 0.33 tolerated(0.21) possibly_damaging(0.761) TCGA-NH-A5IV-01 15 44843099 44843099 A - EIF3J Frame_Shift_Del p.E61Rfs*5 0.42 TCGA-NH-A5IV-01 15 44859709 44859709 G T SPG11 Missense_Mutation p.L2223M 0.17 deleterious(0) probably_damaging(0.934) TCGA-NH-A5IV-01 15 44861604 44861604 A G SPG11 Silent p.L2193L 0.42 TCGA-NH-A5IV-01 15 44888483 44888483 G T SPG11 Missense_Mutation p.P1411H 0.27 tolerated(0.08) benign(0.424) TCGA-NH-A5IV-01 15 44964633 44964633 A G PATL2 Silent p.P156P 0.36 TCGA-NH-A5IV-01 15 45250699 45250699 G A C15orf43 Missense_Mutation p.C92Y 0.09 deleterious(0) possibly_damaging(0.779) TCGA-NH-A5IV-01 15 45404043 45404043 C T DUOX2 Missense_Mutation p.G146R 0.28 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 15 45954311 45954311 T C SQRDL Silent p.D131D 0.33 TCGA-NH-A5IV-01 15 49329808 49329808 C T SECISBP2L Silent p.V61V 0.35 TCGA-NH-A5IV-01 15 49447732 49447734 TCC - COPS2 In_Frame_Del p.E14del 0.21 TCGA-NH-A5IV-01 15 50578203 50578203 A - GABPB1 Intron 0.24 TCGA-NH-A5IV-01 15 51201068 51201070 CTT - AP4E1 In_Frame_Del p.F32del 0.50 TCGA-NH-A5IV-01 15 51791454 51791454 A - DMXL2 Frame_Shift_Del p.C1323Vfs*5 0.26 TCGA-NH-A5IV-01 15 52632402 52632402 G A MYO5A Silent p.N1410N 0.07 TCGA-NH-A5IV-01 15 54592554 54592554 C A UNC13C Silent p.S1417S 0.35 TCGA-NH-A5IV-01 15 55527021 55527021 A G RAB27A Missense_Mutation p.F38L 0.47 deleterious(0) benign(0.406) TCGA-NH-A5IV-01 15 57565320 57565320 G A TCF12 Missense_Mutation p.R613H 0.33 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 15 57574709 57574709 C T TCF12 Missense_Mutation p.S682L 0.38 tolerated(0.08) probably_damaging(0.957) TCGA-NH-A5IV-01 15 57730592 57730592 G A CGNL1 Missense_Mutation p.R132H 0.37 tolerated(0.54) benign(0.001) TCGA-NH-A5IV-01 15 57999345 57999345 T C POLR2M Intron 0.40 TCGA-NH-A5IV-01 15 59191923 59191923 T - SLTM Frame_Shift_Del p.N268Mfs*2 0.29 TCGA-NH-A5IV-01 15 59387185 59387185 G A RNF111 3'UTR 0.41 TCGA-NH-A5IV-01 15 60806871 60806871 T C RORA Missense_Mutation p.N156S 0.39 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 15 63481836 63481836 T C RAB8B Missense_Mutation p.Y5H 0.45 deleterious(0.01) possibly_damaging(0.853) TCGA-NH-A5IV-01 15 64967042 64967042 C - ZNF609 Frame_Shift_Del p.P665Hfs*23 0.08 TCGA-NH-A5IV-01 15 65625636 65625636 G A IGDCC3 Missense_Mutation p.T314I 0.20 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 15 66995566 66995566 C - SMAD6 5'UTR 0.31 TCGA-NH-A5IV-01 15 68379053 68379053 A T PIAS1 Missense_Mutation p.D145V 0.09 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 15 68466135 68466135 C T PIAS1 Silent p.D358D 0.40 TCGA-NH-A5IV-01 15 68606193 68606193 G A ITGA11 Missense_Mutation p.R936W 0.31 deleterious(0) possibly_damaging(0.512) TCGA-NH-A5IV-01 15 69348991 69348991 C T NOX5 Silent p.G751G 0.33 TCGA-NH-A5IV-01 15 69677137 69677137 G A PAQR5 Missense_Mutation p.A101T 0.37 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 15 71124657 71124657 G A LARP6 Silent p.L404L 0.09 TCGA-NH-A5IV-01 15 71185968 71185968 G A LRRC49 Missense_Mutation p.E32K 0.15 tolerated_low_confidence(0.08) benign(0.138) TCGA-NH-A5IV-01 15 72030164 72030164 G T THSD4 Missense_Mutation p.G575V 0.31 tolerated(0.43) benign(0.001) TCGA-NH-A5IV-01 15 72030343 72030343 A G THSD4 Missense_Mutation p.K635E 0.11 deleterious(0) possibly_damaging(0.475) TCGA-NH-A5IV-01 15 72069683 72069683 C T THSD4 Silent p.N1009N 0.08 TCGA-NH-A5IV-01 15 72454682 72454682 C T GRAMD2 Silent p.A331A 0.38 TCGA-NH-A5IV-01 15 74177224 74177224 C T TBC1D21 Missense_Mutation p.T157M 0.41 tolerated(0.12) possibly_damaging(0.693) TCGA-NH-A5IV-01 15 74287226 74287226 C - PML Frame_Shift_Del p.E27Rfs*71 0.29 TCGA-NH-A5IV-01 15 74327656 74327656 C - PML Intron 0.26 TCGA-NH-A5IV-01 15 74427775 74427775 G - ISLR2 3'UTR 0.21 TCGA-NH-A5IV-01 15 74912478 74912478 G A CLK3 Missense_Mutation p.R242Q 0.40 deleterious(0.01) probably_damaging(0.968) TCGA-NH-A5IV-01 15 75113461 75113461 G A LMAN1L Missense_Mutation p.R318Q 0.41 tolerated(1) benign(0) TCGA-NH-A5IV-01 15 75980584 75980584 C T CSPG4 Missense_Mutation p.R941H 0.36 tolerated(0.08) benign(0.009) TCGA-NH-A5IV-01 15 76205551 76205551 G A FBXO22 Missense_Mutation p.R96H 0.39 tolerated(0.78) benign(0) TCGA-NH-A5IV-01 15 77406318 77406318 C G PEAK1 3'UTR 0.30 TCGA-NH-A5IV-01 15 78403567 78403567 G A CIB2 Silent p.Y46Y 0.35 TCGA-NH-A5IV-01 15 78770698 78770698 C T IREB2 Nonsense_Mutation p.R419* 0.33 TCGA-NH-A5IV-01 15 79056170 79056170 G A ADAMTS7 Silent p.G1537G 0.40 TCGA-NH-A5IV-01 15 79064162 79064162 T C ADAMTS7 Missense_Mutation p.D714G 0.33 deleterious(0.02) possibly_damaging(0.558) TCGA-NH-A5IV-01 15 82422787 82422787 C T EFTUD1 Missense_Mutation p.R1097Q 0.41 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 15 82431034 82431034 G T EFTUD1 Missense_Mutation p.L1047M 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-NH-A5IV-01 15 83434691 83434691 C - FSD2 Frame_Shift_Del p.G549Afs*4 0.30 TCGA-NH-A5IV-01 15 84506949 84506949 C T ADAMTSL3 Missense_Mutation p.H237Y 0.32 deleterious(0) benign(0.229) TCGA-NH-A5IV-01 15 85166334 85166334 T A ZSCAN2 3'UTR 0.36 TCGA-NH-A5IV-01 15 85327161 85327161 A G ZNF592 Missense_Mutation p.S419G 0.40 tolerated(0.13) benign(0.005) TCGA-NH-A5IV-01 15 85345389 85345389 C T ZNF592 Missense_Mutation p.A1190V 0.37 tolerated(0.16) benign(0.019) TCGA-NH-A5IV-01 15 85384034 85384034 C T ALPK3 Silent p.C710C 0.37 TCGA-NH-A5IV-01 15 85438322 85438322 G T SLC28A1 Missense_Mutation p.Q143H 0.36 tolerated(0.55) possibly_damaging(0.45) TCGA-NH-A5IV-01 15 85447430 85447430 C T SLC28A1 Silent p.F188F 0.04 TCGA-NH-A5IV-01 15 86313003 86313003 G A KLHL25 Silent p.S13S 0.33 TCGA-NH-A5IV-01 15 88727513 88727513 C T NTRK3 Missense_Mutation p.R89H 0.52 tolerated(0.1) benign(0.302) TCGA-NH-A5IV-01 15 89173535 89173535 G A AEN 3'UTR 0.37 TCGA-NH-A5IV-01 15 89382222 89382222 C T ACAN Silent p.C133C 0.32 TCGA-NH-A5IV-01 15 89744315 89744315 A - ABHD2 3'UTR 0.09 TCGA-NH-A5IV-01 15 90172699 90172699 G T KIF7 Missense_Mutation p.L1142M 0.37 deleterious(0.01) probably_damaging(0.917) TCGA-NH-A5IV-01 15 90174815 90174815 C T KIF7 Missense_Mutation p.D1008N 0.47 tolerated(0.44) benign(0.017) TCGA-NH-A5IV-01 15 90349231 90349231 C T ANPEP Missense_Mutation p.R195H 0.07 deleterious(0.01) probably_damaging(0.984) TCGA-NH-A5IV-01 15 90349472 90349472 C A ANPEP Nonsense_Mutation p.E115* 0.50 TCGA-NH-A5IV-01 15 90771952 90771952 C T SEMA4B 3'UTR 0.50 TCGA-NH-A5IV-01 15 91419080 91419080 G A FURIN Missense_Mutation p.R37H 0.17 tolerated(0.68) benign(0) TCGA-NH-A5IV-01 15 91448607 91448607 G A MAN2A2 Missense_Mutation p.A87T 0.18 tolerated(0.43) benign(0.116) TCGA-NH-A5IV-01 15 99926442 99926442 A G LRRC28 3'UTR 0.41 TCGA-NH-A5IV-01 16 10032237 10032237 C T GRIN2A Missense_Mutation p.V196M 0.56 deleterious(0.03) probably_damaging(0.999) TCGA-NH-A5IV-01 16 11000789 11000789 C T CIITA Silent p.A480A 0.31 TCGA-NH-A5IV-01 16 11001001 11001001 G A CIITA Missense_Mutation p.G551D 0.37 tolerated(0.67) possibly_damaging(0.524) TCGA-NH-A5IV-01 16 1306670 1306670 C T TPSD1 Missense_Mutation p.A79V 0.45 deleterious(0) probably_damaging(0.977) TCGA-NH-A5IV-01 16 14960473 14960473 G T NOMO1 Missense_Mutation p.E577D 0.45 tolerated(1) benign(0.003) TCGA-NH-A5IV-01 16 1515268 1515268 C T CLCN7 Silent p.P71P 0.28 TCGA-NH-A5IV-01 16 1552047 1552047 G A TELO2 Splice_Site p.X491_splice 0.34 TCGA-NH-A5IV-01 16 15725315 15725315 G A KIAA0430 Missense_Mutation p.A425V 0.11 deleterious(0) possibly_damaging(0.824) TCGA-NH-A5IV-01 16 18554006 18554006 T C NOMO2 Silent p.Q261Q 0.50 TCGA-NH-A5IV-01 16 19051753 19051753 G A TMC7 Missense_Mutation p.R441H 0.41 deleterious(0.03) possibly_damaging(0.77) TCGA-NH-A5IV-01 16 19126446 19126446 G - ITPRIPL2 Frame_Shift_Del p.G223Afs*56 0.33 TCGA-NH-A5IV-01 16 19455441 19455441 G A TMC5 Missense_Mutation p.R276H 0.36 tolerated(1) benign(0) TCGA-NH-A5IV-01 16 19508442 19508442 G A TMC5 Splice_Site p.X978_splice 0.39 TCGA-NH-A5IV-01 16 19718153 19718153 A - KNOP1 3'UTR 0.23 TCGA-NH-A5IV-01 16 2011767 2011767 G A NDUFB10 Intron 0.49 TCGA-NH-A5IV-01 16 2018673 2018673 G A RNF151 Missense_Mutation p.R162Q 0.10 tolerated(0.31) benign(0.007) TCGA-NH-A5IV-01 16 2025918 2025918 C T TBL3 Missense_Mutation p.T366M 0.37 deleterious(0) probably_damaging(0.993) TCGA-NH-A5IV-01 16 20344588 20344588 G A UMOD 3'UTR 0.45 TCGA-NH-A5IV-01 16 20570625 20570625 G A ACSM2B Missense_Mutation p.R108C 0.44 deleterious(0.02) benign(0.188) TCGA-NH-A5IV-01 16 20748037 20748037 A - THUMPD1 Intron 0.42 TCGA-NH-A5IV-01 16 20856149 20856149 A - AC004381.6 Frame_Shift_Del p.K641Nfs*5 0.24 TCGA-NH-A5IV-01 16 20856537 20856537 C - AC004381.6 Frame_Shift_Del p.F702Lfs*9 0.25 TCGA-NH-A5IV-01 16 2121856 2121856 C T TSC2 Missense_Mutation p.A673V 0.45 tolerated(0.29) benign(0.008) TCGA-NH-A5IV-01 16 2130322 2130322 C T TSC2 Missense_Mutation p.A1185V 0.36 tolerated(0.2) possibly_damaging(0.72) TCGA-NH-A5IV-01 16 2134447 2134447 C T TSC2 Silent p.G1408G 0.31 TCGA-NH-A5IV-01 16 2147496 2147496 C T PKD1 Missense_Mutation p.C3410Y 0.19 benign(0.142) TCGA-NH-A5IV-01 16 2160447 2160447 G A PKD1 Missense_Mutation p.A1574V 0.37 benign(0.084) TCGA-NH-A5IV-01 16 2161783 2161783 C T PKD1 Missense_Mutation p.V1129M 0.38 possibly_damaging(0.473) TCGA-NH-A5IV-01 16 2168059 2168059 C T PKD1 Missense_Mutation p.A312T 0.48 benign(0.108) TCGA-NH-A5IV-01 16 2203012 2203012 T A RAB26 Missense_Mutation p.V186E 0.40 tolerated(0.09) benign(0.009) TCGA-NH-A5IV-01 16 22151532 22151532 C T VWA3A Missense_Mutation p.R784C 0.40 deleterious(0.02) benign(0.033) TCGA-NH-A5IV-01 16 22262606 22262606 G - EEF2K Frame_Shift_Del p.E196Rfs*22 0.29 TCGA-NH-A5IV-01 16 2228525 2228525 C T CASKIN1 3'UTR 0.39 TCGA-NH-A5IV-01 16 226722 226722 C T HBA1 Silent p.L3L 0.09 TCGA-NH-A5IV-01 16 2284628 2284628 G A E4F1 Silent p.P546P 0.41 TCGA-NH-A5IV-01 16 23080458 23080458 C T USP31 Missense_Mutation p.A990T 0.38 tolerated_low_confidence(0.44) benign(0.301) TCGA-NH-A5IV-01 16 2326656 2326656 G A ABCA3 3'UTR 0.37 TCGA-NH-A5IV-01 16 2336877 2336877 C A ABCA3 Silent p.V1032V 0.08 TCGA-NH-A5IV-01 16 23563549 23563549 G A EARS2 Silent p.I72I 0.37 TCGA-NH-A5IV-01 16 23700658 23700658 A G PLK1 Missense_Mutation p.D457G 0.41 tolerated(0.07) benign(0.034) TCGA-NH-A5IV-01 16 23703340 23703340 G - ERN2 Frame_Shift_Del p.Q822Rfs*35 0.21 TCGA-NH-A5IV-01 16 2376147 2376147 G T ABCA3 Silent p.S61S 0.41 TCGA-NH-A5IV-01 16 24566953 24566953 A G RBBP6 Silent p.E122E 0.39 TCGA-NH-A5IV-01 16 24582550 24582550 A C RBBP6 Missense_Mutation p.E1388A 0.37 deleterious_low_confidence(0) unknown(0) TCGA-NH-A5IV-01 16 24801891 24801893 CTA - TNRC6A In_Frame_Del p.T644del 0.37 TCGA-NH-A5IV-01 16 24802674 24802674 C T TNRC6A Missense_Mutation p.P904L 0.42 deleterious(0.01) possibly_damaging(0.802) TCGA-NH-A5IV-01 16 24834955 24834955 T C TNRC6A Missense_Mutation p.S1906P 0.33 tolerated(0.09) possibly_damaging(0.479) TCGA-NH-A5IV-01 16 24920296 24920296 A G SLC5A11 Missense_Mutation p.D510G 0.43 deleterious(0) probably_damaging(0.987) TCGA-NH-A5IV-01 16 24990324 24990324 G T ARHGAP17 Missense_Mutation p.A19D 0.36 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 16 25143750 25143750 G A LCMT1 Missense_Mutation p.S78N 0.46 tolerated(0.56) benign(0.002) TCGA-NH-A5IV-01 16 27221718 27221718 C T KDM8 Missense_Mutation p.R130C 0.45 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 16 27227280 27227280 G A KDM8 Silent p.G309G 0.35 TCGA-NH-A5IV-01 16 27506728 27506728 G A GTF3C1 Silent p.Y812Y 0.34 TCGA-NH-A5IV-01 16 27506772 27506772 G A GTF3C1 Missense_Mutation p.P798S 0.28 deleterious(0.04) possibly_damaging(0.662) TCGA-NH-A5IV-01 16 27689261 27689261 G A KIAA0556 Missense_Mutation p.R251H 0.24 tolerated(0.53) benign(0.005) TCGA-NH-A5IV-01 16 27781335 27781337 AGG - KIAA0556 In_Frame_Del 0.35 TCGA-NH-A5IV-01 16 27786376 27786376 A G KIAA0556 Missense_Mutation p.M1474V 0.30 deleterious(0.03) possibly_damaging(0.885) TCGA-NH-A5IV-01 16 28137040 28137040 C T XPO6 Missense_Mutation p.R579Q 0.34 tolerated(0.08) probably_damaging(0.931) TCGA-NH-A5IV-01 16 2817481 2817481 C T SRRM2 Missense_Mutation p.P2318S 0.33 benign(0.298) TCGA-NH-A5IV-01 16 2825478 2825478 G A TCEB2 Missense_Mutation p.A73V 0.29 deleterious(0.01) benign(0.301) TCGA-NH-A5IV-01 16 28616941 28616942 - T SULT1A1 3'UTR 0.29 TCGA-NH-A5IV-01 16 28847312 28847312 C A ATXN2L Missense_Mutation p.P985Q 0.38 deleterious(0.04) possibly_damaging(0.622) TCGA-NH-A5IV-01 16 2949274 2949274 T C FLYWCH2 3'UTR 0.29 TCGA-NH-A5IV-01 16 29675786 29675786 G A SPN Missense_Mutation p.R246Q 0.41 tolerated(0.62) benign(0.02) TCGA-NH-A5IV-01 16 29677874 29677874 C T SPN 3'UTR 0.32 TCGA-NH-A5IV-01 16 29678400 29678400 G T SPN 3'UTR 0.43 TCGA-NH-A5IV-01 16 29814211 29814211 C T KIF22 Missense_Mutation p.R468W 0.41 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 16 29913029 29913029 C - ASPHD1 Frame_Shift_Del p.C249Afs*27 0.26 TCGA-NH-A5IV-01 16 29917203 29917203 C T ASPHD1 Silent p.F386F 0.43 TCGA-NH-A5IV-01 16 30041821 30041821 C - FAM57B Frame_Shift_Del p.V10Wfs*112 0.15 TCGA-NH-A5IV-01 16 3017600 3017600 C T KREMEN2 Silent p.R391R 0.18 TCGA-NH-A5IV-01 16 3017954 3017954 C T KREMEN2 Missense_Mutation p.A441V 0.49 tolerated_low_confidence(0.11) benign(0.242) TCGA-NH-A5IV-01 16 3026945 3026945 C T PKMYT1 Missense_Mutation p.R33H 0.15 tolerated(0.11) benign(0.01) TCGA-NH-A5IV-01 16 30365545 30365545 C - CD2BP2 Frame_Shift_Del p.S60Pfs*12 0.28 TCGA-NH-A5IV-01 16 30505577 30505577 C T ITGAL Silent p.L420L 0.43 TCGA-NH-A5IV-01 16 30566778 30566778 G A ZNF764 Missense_Mutation p.R322C 0.36 deleterious(0.04) probably_damaging(0.991) TCGA-NH-A5IV-01 16 30732040 30732040 G A SRCAP Silent p.L998L 0.40 TCGA-NH-A5IV-01 16 30736371 30736371 C - SRCAP Frame_Shift_Del p.P1878Hfs*89 0.42 TCGA-NH-A5IV-01 16 30745013 30745013 G A SRCAP Missense_Mutation p.A2130T 0.47 probably_damaging(0.981) TCGA-NH-A5IV-01 16 30762462 30762462 G A PHKG2 Missense_Mutation p.R44Q 0.44 deleterious(0) possibly_damaging(0.645) TCGA-NH-A5IV-01 16 30764595 30764595 G A PHKG2 Silent p.V123V 0.18 TCGA-NH-A5IV-01 16 30768017 30768017 C - PHKG2 Frame_Shift_Del p.R305Afs*19 0.33 TCGA-NH-A5IV-01 16 30785325 30785325 G A RNF40 Missense_Mutation p.V966I 0.40 deleterious(0) possibly_damaging(0.785) TCGA-NH-A5IV-01 16 30793647 30793647 C T ZNF629 Missense_Mutation p.G668R 0.45 deleterious(0.02) probably_damaging(0.982) TCGA-NH-A5IV-01 16 30941812 30941812 C A FBXL19 Missense_Mutation p.P423H 0.31 tolerated(0.11) probably_damaging(0.994) TCGA-NH-A5IV-01 16 30975430 30975430 C T SETD1A Missense_Mutation p.R219C 0.36 probably_damaging(0.928) TCGA-NH-A5IV-01 16 30977058 30977058 C T SETD1A Missense_Mutation p.A619V 0.40 benign(0.024) TCGA-NH-A5IV-01 16 31004455 31004455 C T STX1B Missense_Mutation p.R261Q 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-NH-A5IV-01 16 31094786 31094786 A - PRSS53 3'UTR 0.23 TCGA-NH-A5IV-01 16 31121757 31121757 G A BCKDK Silent p.T193T 0.42 TCGA-NH-A5IV-01 16 31202855 31202856 - T FUS 3'UTR 0.18 TCGA-NH-A5IV-01 16 31289349 31289349 A T ITGAM Silent p.R425R 0.40 TCGA-NH-A5IV-01 16 31439349 31439349 C T COX6A2 Missense_Mutation p.R66H 0.19 tolerated(0.11) probably_damaging(0.999) TCGA-NH-A5IV-01 16 31488908 31488908 G T TGFB1I1 3'UTR 0.34 TCGA-NH-A5IV-01 16 31927154 31927154 T G ZNF267 Silent p.P528P 0.41 TCGA-NH-A5IV-01 16 3432697 3432697 G A ZSCAN32 3'UTR 0.58 TCGA-NH-A5IV-01 16 348134 348134 C T AXIN1 Missense_Mutation p.G458R 0.50 deleterious(0.04) benign(0.149) TCGA-NH-A5IV-01 16 354350 354350 C T AXIN1 Missense_Mutation p.R403Q 0.45 tolerated(0.51) probably_damaging(0.999) TCGA-NH-A5IV-01 16 359972 359972 C T AXIN1 Splice_Site p.X372_splice 0.41 TCGA-NH-A5IV-01 16 3634785 3634785 T C SLX4 Missense_Mutation p.K1575R 0.40 deleterious(0.02) benign(0.414) TCGA-NH-A5IV-01 16 3714530 3714530 G A TRAP1 Intron 0.52 TCGA-NH-A5IV-01 16 3819310 3819310 G - CREBBP Frame_Shift_Del p.S976Pfs*22 0.08 TCGA-NH-A5IV-01 16 4016499 4016499 C T ADCY9 Silent p.T1113T 0.57 TCGA-NH-A5IV-01 16 4414282 4414282 C T CORO7 Missense_Mutation p.A424T 0.42 tolerated(0.48) benign(0.022) TCGA-NH-A5IV-01 16 46629531 46629531 G A SHCBP1 Missense_Mutation p.T466M 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-NH-A5IV-01 16 46771797 46771797 G A MYLK3 Missense_Mutation p.P276L 0.50 tolerated(0.2) benign(0.005) TCGA-NH-A5IV-01 16 47628093 47628093 T - PHKB Frame_Shift_Del p.L392* 0.27 TCGA-NH-A5IV-01 16 48239400 48239400 C T ABCC11 Missense_Mutation p.V577I 0.31 deleterious(0.01) possibly_damaging(0.875) TCGA-NH-A5IV-01 16 4837560 4837560 A G SEPT12 Silent p.P29P 0.41 TCGA-NH-A5IV-01 16 49670328 49670328 C T ZNF423 Missense_Mutation p.R912Q 0.15 tolerated(0.17) benign(0.265) TCGA-NH-A5IV-01 16 50261779 50261779 G A PAPD5 Silent p.P595P 0.44 TCGA-NH-A5IV-01 16 51175745 51175745 G A SALL1 Missense_Mutation p.P130S 0.35 tolerated(0.29) benign(0) TCGA-NH-A5IV-01 16 53725978 53725978 C A RPGRIP1L Missense_Mutation p.G177C 0.37 deleterious(0) probably_damaging(0.976) TCGA-NH-A5IV-01 16 54317559 54317559 A - IRX3 3'UTR 0.11 TCGA-NH-A5IV-01 16 55361759 55361759 G T IRX6 Missense_Mutation p.E225D 0.35 tolerated(0.35) benign(0.004) TCGA-NH-A5IV-01 16 55733504 55733504 G A SLC6A2 Missense_Mutation p.G510R 0.35 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 16 55907771 55907771 C T CES5A Silent p.L113L 0.39 TCGA-NH-A5IV-01 16 56782171 56782171 G T NUP93 Missense_Mutation p.E4D 0.27 tolerated(0.28) benign(0.007) TCGA-NH-A5IV-01 16 56904597 56904597 G A SLC12A3 Silent p.S267S 0.34 TCGA-NH-A5IV-01 16 56918118 56918118 T C SLC12A3 Splice_Site p.X609_splice 0.31 TCGA-NH-A5IV-01 16 57060313 57060313 T - NLRC5 Frame_Shift_Del p.F487Lfs*8 0.35 TCGA-NH-A5IV-01 16 57416002 57416002 C T CX3CL1 Silent p.D84D 0.36 TCGA-NH-A5IV-01 16 57609464 57609464 G A GPR114 3'UTR 0.41 TCGA-NH-A5IV-01 16 57718087 57718087 C T GPR97 Silent p.F375F 0.36 TCGA-NH-A5IV-01 16 57794752 57794752 G A KIFC3 Silent p.D706D 0.45 TCGA-NH-A5IV-01 16 57803506 57803506 C T KIFC3 Splice_Site p.X406_splice 0.33 TCGA-NH-A5IV-01 16 58031294 58031294 G A ZNF319 Silent p.C292C 0.11 TCGA-NH-A5IV-01 16 58148808 58148808 C T C16orf80 Missense_Mutation p.R161H 0.53 deleterious(0.01) probably_damaging(0.949) TCGA-NH-A5IV-01 16 597474 597474 C - CAPN15 Frame_Shift_Del p.P214Qfs*73 0.22 TCGA-NH-A5IV-01 16 598149 598149 G A CAPN15 Silent p.T437T 0.46 TCGA-NH-A5IV-01 16 624481 624481 T C PIGQ Missense_Mutation p.V136A 0.09 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-NH-A5IV-01 16 64984907 64984907 C T CDH11 Missense_Mutation p.V553M 0.56 deleterious(0.01) benign(0.342) TCGA-NH-A5IV-01 16 66424388 66424388 C A CDH5 Silent p.P288P 0.35 TCGA-NH-A5IV-01 16 66592101 66592102 TG - CKLF Frame_Shift_Del p.V30Dfs*13 0.28 TCGA-NH-A5IV-01 16 66651055 66651055 G A CMTM4 3'UTR 0.44 TCGA-NH-A5IV-01 16 66847469 66847469 G A NAE1 Silent p.N344N 0.32 TCGA-NH-A5IV-01 16 67237257 67237257 T C ELMO3 Missense_Mutation p.L656P 0.35 deleterious(0) probably_damaging(0.986) TCGA-NH-A5IV-01 16 67680413 67680413 C - RLTPR Frame_Shift_Del p.C155Vfs*54 0.24 TCGA-NH-A5IV-01 16 67682810 67682810 C T RLTPR Silent p.G508G 0.37 TCGA-NH-A5IV-01 16 67709359 67709359 G A GFOD2 Missense_Mutation p.A286V 0.23 tolerated(0.52) benign(0.001) TCGA-NH-A5IV-01 16 67863724 67863724 G A CENPT Missense_Mutation p.A377V 0.38 tolerated(1) benign(0.002) TCGA-NH-A5IV-01 16 67912294 67912294 C T EDC4 Missense_Mutation p.R346W 0.32 deleterious(0) probably_damaging(0.947) TCGA-NH-A5IV-01 16 67917843 67917844 - C EDC4 Intron 0.43 TCGA-NH-A5IV-01 16 67991667 67991667 G A SLC12A4 Silent p.I176I 0.42 TCGA-NH-A5IV-01 16 68000698 68000698 G T SLC12A4 Intron 0.24 TCGA-NH-A5IV-01 16 68119666 68119666 C - NFATC3 Frame_Shift_Del p.P29Rfs*21 0.50 TCGA-NH-A5IV-01 16 68160511 68160511 A G NFATC3 Missense_Mutation p.K467E 0.41 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 16 68405891 68405891 G T SMPD3 Missense_Mutation p.P65H 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A5IV-01 16 69184439 69184439 G A CIRH1A Splice_Site p.X247_splice 0.33 TCGA-NH-A5IV-01 16 69419616 69419616 C - TERF2 Frame_Shift_Del p.E45Rfs*72 0.50 TCGA-NH-A5IV-01 16 70351415 70351415 C T DDX19B Nonsense_Mutation p.Q105* 0.37 TCGA-NH-A5IV-01 16 70509341 70509341 C T FUK Silent p.F822F 0.26 TCGA-NH-A5IV-01 16 705810 705810 G A WDR90 Silent p.P629P 0.27 TCGA-NH-A5IV-01 16 70605016 70605016 C T SF3B3 Missense_Mutation p.H1143Y 0.41 tolerated(0.67) benign(0.082) TCGA-NH-A5IV-01 16 70693544 70693544 G T IL34 Silent p.V142V 0.08 TCGA-NH-A5IV-01 16 71571208 71571208 G A CHST4 Missense_Mutation p.V210M 0.44 deleterious(0) probably_damaging(0.942) TCGA-NH-A5IV-01 16 71823250 71823250 A G AP1G1 Missense_Mutation p.Y45H 0.45 tolerated(0.44) benign(0.028) TCGA-NH-A5IV-01 16 71885059 71885059 C T ATXN1L Silent p.G472G 0.47 TCGA-NH-A5IV-01 16 71894208 71894208 G A ZNF821 Missense_Mutation p.R318C 0.42 deleterious(0) possibly_damaging(0.891) TCGA-NH-A5IV-01 16 72130813 72130813 G A DHX38 Missense_Mutation p.R139Q 0.56 tolerated(0.18) possibly_damaging(0.602) TCGA-NH-A5IV-01 16 72132678 72132678 C T DHX38 Nonsense_Mutation p.R251* 0.54 TCGA-NH-A5IV-01 16 74706328 74706329 GA - MLKL 3'UTR 0.41 TCGA-NH-A5IV-01 16 75203757 75203757 C T ZFP1 Missense_Mutation p.T250I 0.08 tolerated(0.33) possibly_damaging(0.88) TCGA-NH-A5IV-01 16 75681746 75681746 G - TERF2IP 5'UTR 0.19 TCGA-NH-A5IV-01 16 77387751 77387751 G T ADAMTS18 Missense_Mutation p.P498H 0.36 deleterious(0) probably_damaging(0.971) TCGA-NH-A5IV-01 16 77465417 77465417 C T ADAMTS18 Silent p.A90A 0.48 TCGA-NH-A5IV-01 16 786269 786269 T - NARFL Frame_Shift_Del p.I146* 0.24 TCGA-NH-A5IV-01 16 79628318 79628318 A G MAF 3'UTR 0.31 TCGA-NH-A5IV-01 16 81197217 81197217 C T PKD1L2 RNA 0.44 TCGA-NH-A5IV-01 16 81929463 81929463 C T PLCG2 Missense_Mutation p.T375M 0.58 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 16 83998786 83998786 G - OSGIN1 Frame_Shift_Del p.T205Pfs*18 0.31 TCGA-NH-A5IV-01 16 83999068 83999068 C T OSGIN1 Missense_Mutation p.A297V 0.63 deleterious(0) probably_damaging(0.993) TCGA-NH-A5IV-01 16 84213651 84213651 G - TAF1C Frame_Shift_Del p.Q534Sfs*28 0.29 TCGA-NH-A5IV-01 16 842546 842546 G - CHTF18 Frame_Shift_Del p.L481Sfs*3 0.26 TCGA-NH-A5IV-01 16 84479970 84479970 A - ATP2C2 Frame_Shift_Del p.E482Rfs*13 0.30 TCGA-NH-A5IV-01 16 84888373 84888373 G A CRISPLD2 Missense_Mutation p.R216Q 0.33 tolerated(0.12) benign(0.033) TCGA-NH-A5IV-01 16 85010045 85010045 C - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.24 TCGA-NH-A5IV-01 16 85024010 85024010 G T ZDHHC7 Missense_Mutation p.P72H 0.33 deleterious(0.02) probably_damaging(1) TCGA-NH-A5IV-01 16 86565861 86565861 G A MTHFSD Missense_Mutation p.P303L 0.34 tolerated(0.39) benign(0.002) TCGA-NH-A5IV-01 16 8736334 8736334 G A METTL22 Missense_Mutation p.D308N 0.10 deleterious(0.05) benign(0.192) TCGA-NH-A5IV-01 16 87446355 87446355 C T ZCCHC14 Missense_Mutation p.A521T 0.33 tolerated_low_confidence(0.27) benign(0.028) TCGA-NH-A5IV-01 16 87677941 87677941 G A JPH3 Missense_Mutation p.A154T 0.41 tolerated(0.27) benign(0.104) TCGA-NH-A5IV-01 16 88503690 88503690 C T ZNF469 Missense_Mutation p.A3243V 0.45 benign(0.02) TCGA-NH-A5IV-01 16 88643799 88643799 C T ZC3H18 Missense_Mutation p.R90W 0.61 deleterious_low_confidence(0) unknown(0) TCGA-NH-A5IV-01 16 88786289 88786289 G A PIEZO1 Missense_Mutation p.R2082C 0.35 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 16 88786811 88786811 A - PIEZO1 Frame_Shift_Del p.F1977Lfs*33 0.29 TCGA-NH-A5IV-01 16 89712461 89712461 C T CHMP1A 3'UTR 0.40 TCGA-NH-A5IV-01 16 89775721 89775722 - C VPS9D1 Frame_Shift_Ins p.A504Gfs*67 0.25 TCGA-NH-A5IV-01 16 89778507 89778507 G A VPS9D1 Missense_Mutation p.L203F 0.29 deleterious(0) possibly_damaging(0.814) TCGA-NH-A5IV-01 16 89779071 89779071 G A VPS9D1 Missense_Mutation p.A162V 0.33 deleterious(0.03) benign(0.091) TCGA-NH-A5IV-01 16 8996039 8996039 A G USP7 Silent p.I649I 0.08 TCGA-NH-A5IV-01 16 89962476 89962476 G A TCF25 Missense_Mutation p.R336H 0.43 deleterious(0.01) possibly_damaging(0.841) TCGA-NH-A5IV-01 16 89977552 89977552 T C TCF25 Missense_Mutation p.M646T 0.39 deleterious(0) possibly_damaging(0.756) TCGA-NH-A5IV-01 16 89986206 89986206 C T MC1R Silent p.I180I 0.34 TCGA-NH-A5IV-01 16 90037840 90037840 T G CENPBD1 Missense_Mutation p.K164T 0.47 tolerated(0.58) benign(0.05) TCGA-NH-A5IV-01 16 90141420 90141420 T C PRDM7 Missense_Mutation p.T69A 0.36 tolerated(0.06) benign(0.016) TCGA-NH-A5IV-01 17 10101583 10101583 C T GAS7 Missense_Mutation p.G42D 0.30 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 17 10303844 10303844 C T MYH8 Missense_Mutation p.A1200T 0.39 deleterious(0.03) benign(0.114) TCGA-NH-A5IV-01 17 10304074 10304075 - C MYH8 Frame_Shift_Ins p.E1123Gfs*19 0.29 TCGA-NH-A5IV-01 17 10435021 10435021 T - MYH2 Frame_Shift_Del p.R876Gfs*9 0.26 TCGA-NH-A5IV-01 17 10447239 10447239 T C MYH2 Missense_Mutation p.I210V 0.05 tolerated(0.63) benign(0) TCGA-NH-A5IV-01 17 10447258 10447258 A C MYH2 Silent p.G203G 0.05 TCGA-NH-A5IV-01 17 10541467 10541467 T A MYH3 Missense_Mutation p.I1208F 0.39 deleterious(0) probably_damaging(0.992) TCGA-NH-A5IV-01 17 10628447 10628447 A G TMEM220 Silent p.N56N 0.13 TCGA-NH-A5IV-01 17 11145353 11145353 C T SHISA6 Missense_Mutation p.P205L 0.29 tolerated(0.06) probably_damaging(0.994) TCGA-NH-A5IV-01 17 11604543 11604543 G A DNAH9 Nonsense_Mutation p.W1710* 0.32 TCGA-NH-A5IV-01 17 12893545 12893545 G A ARHGAP44 3'UTR 0.35 TCGA-NH-A5IV-01 17 12896244 12896244 C T ELAC2 Missense_Mutation p.R791Q 0.42 deleterious(0.03) possibly_damaging(0.807) TCGA-NH-A5IV-01 17 12901817 12901817 T C ELAC2 Missense_Mutation p.S478G 0.31 tolerated(0.35) benign(0.001) TCGA-NH-A5IV-01 17 14205174 14205174 G A HS3ST3B1 Silent p.E113E 0.38 TCGA-NH-A5IV-01 17 15554486 15554486 C T RP11-385D13.1 Silent p.Q146Q 0.10 TCGA-NH-A5IV-01 17 15974750 15974750 C T NCOR1 Silent p.R1375R 0.39 TCGA-NH-A5IV-01 17 16347197 16347197 A G FAM211A Missense_Mutation p.L247P 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A5IV-01 17 16593961 16593961 G A CCDC144A Missense_Mutation p.E83K 0.39 tolerated_low_confidence(0.26) benign(0.003) TCGA-NH-A5IV-01 17 16593991 16593991 G A CCDC144A Missense_Mutation p.V93I 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-NH-A5IV-01 17 17046063 17046063 C T MPRIP Missense_Mutation p.A340V 0.32 tolerated(0.65) benign(0.007) TCGA-NH-A5IV-01 17 17131429 17131429 C T FLCN Missense_Mutation p.C8Y 0.49 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 17 18024036 18024036 C A MYO15A Missense_Mutation p.A641E 0.55 unknown(0) TCGA-NH-A5IV-01 17 18151060 18151060 C T FLII Missense_Mutation p.A800T 0.30 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 17 18152492 18152492 T - FLII Frame_Shift_Del p.K628Rfs*27 0.24 TCGA-NH-A5IV-01 17 18167528 18167528 G A MIEF2 Missense_Mutation p.G283D 0.41 deleterious(0) probably_damaging(0.959) TCGA-NH-A5IV-01 17 18343733 18343733 C T KRT16P1 RNA 0.67 TCGA-NH-A5IV-01 17 18862530 18862530 C T SLC5A10 Missense_Mutation p.A89V 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A5IV-01 17 19287803 19287803 C T MFAP4 Missense_Mutation p.R271H 0.08 tolerated(0.56) benign(0.066) TCGA-NH-A5IV-01 17 19459098 19459098 C - SLC47A1 Intron 0.30 TCGA-NH-A5IV-01 17 1962093 1962093 C A HIC1 Silent p.P722P 0.14 TCGA-NH-A5IV-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.28 TCGA-NH-A5IV-01 17 1964762 1964762 G C SMG6 3'UTR 0.33 TCGA-NH-A5IV-01 17 19700981 19700981 G A ULK2 Nonsense_Mutation p.Q513* 0.08 TCGA-NH-A5IV-01 17 20407302 20407302 G A RP11-434D2.7 3'Flank 0.08 TCGA-NH-A5IV-01 17 2280012 2280012 C - SGSM2 Intron 0.29 TCGA-NH-A5IV-01 17 2585060 2585060 C T PAFAH1B1 Silent p.S399S 0.31 TCGA-NH-A5IV-01 17 2601631 2601631 G A CLUH Missense_Mutation p.T469M 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-NH-A5IV-01 17 2604054 2604055 - G CLUH Frame_Shift_Ins p.Q326Pfs*22 0.14 TCGA-NH-A5IV-01 17 26107895 26107895 C T NOS2 Missense_Mutation p.R301H 0.16 deleterious(0) possibly_damaging(0.904) TCGA-NH-A5IV-01 17 26851100 26851100 C T FOXN1 Missense_Mutation p.A38V 0.39 tolerated_low_confidence(0.32) benign(0.003) TCGA-NH-A5IV-01 17 26919513 26919513 G - SPAG5 Frame_Shift_Del p.P250Lfs*21 0.26 TCGA-NH-A5IV-01 17 26944237 26944237 A - KIAA0100 Intron 0.08 TCGA-NH-A5IV-01 17 27064984 27064984 G A NEK8 Missense_Mutation p.G346D 0.30 deleterious(0.01) probably_damaging(0.98) TCGA-NH-A5IV-01 17 27225826 27225826 C T DHRS13 Missense_Mutation p.R256Q 0.39 deleterious(0.04) probably_damaging(0.984) TCGA-NH-A5IV-01 17 27278044 27278044 T C PHF12 5'UTR 0.54 TCGA-NH-A5IV-01 17 27287971 27287971 G A SEZ6 Missense_Mutation p.R421C 0.43 deleterious(0) probably_damaging(0.985) TCGA-NH-A5IV-01 17 27591409 27591410 - TA NUFIP2 3'UTR 0.30 TCGA-NH-A5IV-01 17 28295877 28295877 G A EFCAB5 Missense_Mutation p.G87S 0.40 tolerated_low_confidence(0.12) benign(0.019) TCGA-NH-A5IV-01 17 29483051 29483051 G A NF1 Silent p.E37E 0.12 TCGA-NH-A5IV-01 17 30817222 30817222 G T CDK5R1 3'UTR 0.37 TCGA-NH-A5IV-01 17 30817704 30817704 A - CDK5R1 3'UTR 0.25 TCGA-NH-A5IV-01 17 32690135 32690135 T C CCL1 Missense_Mutation p.M16V 0.17 tolerated(0.33) benign(0.017) TCGA-NH-A5IV-01 17 32908127 32908127 C G TMEM132E Missense_Mutation p.A11G 0.41 tolerated_low_confidence(0.51) unknown(0) TCGA-NH-A5IV-01 17 32964945 32964945 C T TMEM132E Silent p.G883G 0.56 TCGA-NH-A5IV-01 17 32965344 32965344 C A TMEM132E 3'UTR 0.19 TCGA-NH-A5IV-01 17 33289200 33289200 G A ZNF830 Silent p.L205L 0.18 TCGA-NH-A5IV-01 17 33289332 33289332 T - ZNF830 Frame_Shift_Del p.F251Lfs*6 0.23 TCGA-NH-A5IV-01 17 33434083 33434083 A G RAD51D Missense_Mutation p.V155A 0.38 deleterious(0) possibly_damaging(0.755) TCGA-NH-A5IV-01 17 33486541 33486541 G A UNC45B Missense_Mutation p.R319H 0.35 tolerated(0.44) possibly_damaging(0.738) TCGA-NH-A5IV-01 17 34854249 34854249 G A MYO19 Missense_Mutation p.T873M 0.42 deleterious(0) benign(0.346) TCGA-NH-A5IV-01 17 34854909 34854909 T C ZNHIT3 3'Flank 0.43 TCGA-NH-A5IV-01 17 35388916 35388916 A G AATF Missense_Mutation p.H518R 0.40 deleterious(0.01) probably_damaging(0.937) TCGA-NH-A5IV-01 17 35604982 35604982 G T ACACA Silent p.S754S 0.45 TCGA-NH-A5IV-01 17 36484395 36484395 G A GPR179 Missense_Mutation p.A1686V 0.44 deleterious(0.03) benign(0.085) TCGA-NH-A5IV-01 17 36485854 36485855 - C GPR179 Frame_Shift_Ins p.L1200Afs*38 0.25 TCGA-NH-A5IV-01 17 3657166 3657166 C - ITGAE Frame_Shift_Del p.A480Lfs*87 0.49 TCGA-NH-A5IV-01 17 36638887 36638887 C T ARHGAP23 Missense_Mutation p.R959C 0.40 deleterious(0) probably_damaging(0.973) TCGA-NH-A5IV-01 17 36704873 36704873 G A SRCIN1 Missense_Mutation p.R1064C 0.41 deleterious(0) probably_damaging(0.984) TCGA-NH-A5IV-01 17 36708246 36708246 G - SRCIN1 Frame_Shift_Del p.P868Rfs*2 0.27 TCGA-NH-A5IV-01 17 3680951 3680951 A G ITGAE Missense_Mutation p.L13P 0.41 deleterious(0.04) probably_damaging(0.996) TCGA-NH-A5IV-01 17 3749464 3749464 C - C17orf85 Frame_Shift_Del p.P19Rfs*41 0.22 TCGA-NH-A5IV-01 17 3772785 3772785 G A CAMKK1 Missense_Mutation p.T484M 0.18 deleterious(0.02) probably_damaging(0.969) TCGA-NH-A5IV-01 17 37898945 37898945 C - GRB7 Frame_Shift_Del p.R119Afs*8 0.25 TCGA-NH-A5IV-01 17 38027840 38027840 A - ZPBP2 Frame_Shift_Del p.T125Qfs*32 0.27 TCGA-NH-A5IV-01 17 38171995 38171995 C - CSF3 Frame_Shift_Del p.L33Wfs*16 0.28 TCGA-NH-A5IV-01 17 3819462 3819462 G - P2RX1 Frame_Shift_Del p.R20Afs*16 0.24 TCGA-NH-A5IV-01 17 38249158 38249158 G - NR1D1 3'UTR 0.28 TCGA-NH-A5IV-01 17 3850806 3850806 C T ATP2A3 Missense_Mutation p.R325H 0.41 deleterious(0) probably_damaging(0.943) TCGA-NH-A5IV-01 17 38520264 38520264 G A CTD-2267D19.3 3'UTR 0.39 TCGA-NH-A5IV-01 17 38520708 38520709 - A CTD-2267D19.3 3'UTR 0.26 TCGA-NH-A5IV-01 17 38600104 38600104 C - IGFBP4 Frame_Shift_Del p.V42Wfs*52 0.27 TCGA-NH-A5IV-01 17 39020054 39020054 G - KRT12 Frame_Shift_Del p.G291Efs*75 0.28 TCGA-NH-A5IV-01 17 39032405 39032405 T - KRT20 3'UTR 0.33 TCGA-NH-A5IV-01 17 39525933 39525933 G T KRT33B Missense_Mutation p.P24T 0.08 tolerated(0.24) benign(0.002) TCGA-NH-A5IV-01 17 39975893 39975893 C - FKBP10 Frame_Shift_Del p.P345Rfs*20 0.27 TCGA-NH-A5IV-01 17 40095022 40095022 G T TTC25 RNA 0.26 TCGA-NH-A5IV-01 17 40269600 40269600 C T KAT2A Silent p.S481S 0.09 TCGA-NH-A5IV-01 17 40456592 40456592 C T STAT5A Silent p.S434S 0.31 TCGA-NH-A5IV-01 17 40468878 40468878 C T STAT3 Missense_Mutation p.R729H 0.37 tolerated(0.06) benign(0.001) TCGA-NH-A5IV-01 17 40556905 40556905 C T PTRF Missense_Mutation p.V325I 0.40 tolerated(0.19) possibly_damaging(0.899) TCGA-NH-A5IV-01 17 40556939 40556939 G A PTRF Silent p.T313T 0.36 TCGA-NH-A5IV-01 17 40666399 40666399 G A ATP6V0A1 Missense_Mutation p.A782T 0.49 tolerated(0.16) benign(0.007) TCGA-NH-A5IV-01 17 40858038 40858038 C T EZH1 Missense_Mutation p.R609H 0.06 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 17 40939870 40939870 G - WNK4 Frame_Shift_Del p.V608Cfs*53 0.31 TCGA-NH-A5IV-01 17 41158884 41158884 A G IFI35 5'UTR 0.23 TCGA-NH-A5IV-01 17 41891720 41891720 C T MPP3 Missense_Mutation p.R340Q 0.44 deleterious(0.03) possibly_damaging(0.83) TCGA-NH-A5IV-01 17 42226312 42226312 C T C17orf53 Missense_Mutation p.R381W 0.52 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 17 422325 422325 C T VPS53 3'UTR 0.20 TCGA-NH-A5IV-01 17 42397338 42397339 GA - SLC25A39 3'UTR 0.32 TCGA-NH-A5IV-01 17 42478476 42478476 C T GPATCH8 Silent p.A323A 0.43 TCGA-NH-A5IV-01 17 42636257 42636257 G A FZD2 Missense_Mutation p.V401M 0.53 deleterious(0) probably_damaging(0.914) TCGA-NH-A5IV-01 17 43531274 43531274 G - PLEKHM1 Frame_Shift_Del p.E649Rfs*62 0.29 TCGA-NH-A5IV-01 17 4389865 4389865 G A SPNS3 Nonsense_Mutation p.W479* 0.44 TCGA-NH-A5IV-01 17 44096042 44096042 G A MAPT Silent p.S687S 0.38 TCGA-NH-A5IV-01 17 44248899 44248899 C - KANSL1 Frame_Shift_Del p.G204Vfs*2 0.23 TCGA-NH-A5IV-01 17 4451875 4451875 C T MYBBP1A Silent p.P500P 0.09 TCGA-NH-A5IV-01 17 44770354 44770354 C T NSF Missense_Mutation p.T344M 0.42 deleterious(0) probably_damaging(0.989) TCGA-NH-A5IV-01 17 44845823 44845823 C T WNT3 Missense_Mutation p.D311N 0.26 tolerated(0.34) possibly_damaging(0.663) TCGA-NH-A5IV-01 17 44845828 44845828 C T WNT3 Missense_Mutation p.G309D 0.27 deleterious(0) probably_damaging(0.994) TCGA-NH-A5IV-01 17 4575172 4575172 C G PELP1 Missense_Mutation p.E1038D 0.30 unknown(0) TCGA-NH-A5IV-01 17 45892641 45892641 G T OSBPL7 Silent p.S399S 0.41 TCGA-NH-A5IV-01 17 45925689 45925689 G A SP6 Missense_Mutation p.T36M 0.50 deleterious_low_confidence(0.01) benign(0.297) TCGA-NH-A5IV-01 17 4644369 4644369 G T ZMYND15 Missense_Mutation p.D176Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.789) TCGA-NH-A5IV-01 17 47793559 47793559 G A FAM117A Silent p.G343G 0.28 TCGA-NH-A5IV-01 17 47874216 47874216 A - KAT7 Frame_Shift_Del p.K91Nfs*50 0.09 TCGA-NH-A5IV-01 17 4799860 4799860 G - MINK1 Frame_Shift_Del p.E1253Rfs*14 0.35 TCGA-NH-A5IV-01 17 4803648 4803648 G T C17orf107 Missense_Mutation p.Q131H 0.23 tolerated_low_confidence(0.28) benign(0.001) TCGA-NH-A5IV-01 17 48148836 48148836 G A ITGA3 Missense_Mutation p.A305T 0.52 deleterious(0.01) possibly_damaging(0.508) TCGA-NH-A5IV-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.45 TCGA-NH-A5IV-01 17 48541231 48541231 C T ACSF2 Missense_Mutation p.P367S 0.51 deleterious(0.01) probably_damaging(0.933) TCGA-NH-A5IV-01 17 48559502 48559502 C T RSAD1 Silent p.C175C 0.35 TCGA-NH-A5IV-01 17 4863044 4863044 T G SPAG7 Intron 0.15 TCGA-NH-A5IV-01 17 48761047 48761047 C T ABCC3 Missense_Mutation p.S1295F 0.42 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 17 4877703 4877703 C A CAMTA2 Missense_Mutation p.G688C 0.40 tolerated(0.06) possibly_damaging(0.779) TCGA-NH-A5IV-01 17 5392616 5392616 A - MIS12 Frame_Shift_Del p.I147Lfs*10 0.26 TCGA-NH-A5IV-01 17 5418099 5418099 T - NLRP1 Frame_Shift_Del p.K1466Rfs*? 0.31 TCGA-NH-A5IV-01 17 54520230 54520230 G A ANKFN1 Silent p.S348S 0.42 TCGA-NH-A5IV-01 17 56344777 56344777 G A LPO Silent p.V587V 0.15 TCGA-NH-A5IV-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.25 TCGA-NH-A5IV-01 17 57057995 57057996 GA - PPM1E Frame_Shift_Del p.E625Vfs*30 0.30 TCGA-NH-A5IV-01 17 59489556 59489556 G A C17orf82 Missense_Mutation p.A74T 0.51 tolerated_low_confidence(0.2) possibly_damaging(0.695) TCGA-NH-A5IV-01 17 59490310 59490310 C T C17orf82 3'UTR 0.30 TCGA-NH-A5IV-01 17 60059879 60059879 C T MED13 Missense_Mutation p.R1162H 0.37 tolerated(0.06) benign(0.056) TCGA-NH-A5IV-01 17 60744748 60744748 C T MRC2 Intron 0.50 TCGA-NH-A5IV-01 17 61611261 61611261 C T KCNH6 Silent p.G230G 0.26 TCGA-NH-A5IV-01 17 61877936 61877936 A - DDX42 Frame_Shift_Del p.I196Sfs*29 0.26 TCGA-NH-A5IV-01 17 62125289 62125289 G A ERN1 Missense_Mutation p.R820C 0.33 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 17 62496109 62496109 A G DDX5 Missense_Mutation p.Y593H 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.726) TCGA-NH-A5IV-01 17 62855895 62855895 C T LRRC37A3 Missense_Mutation p.E1457K 0.11 tolerated(1) benign(0.015) TCGA-NH-A5IV-01 17 6348621 6348621 G A FAM64A Missense_Mutation p.R64H 0.10 tolerated(0.45) possibly_damaging(0.533) TCGA-NH-A5IV-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.43 TCGA-NH-A5IV-01 17 6358606 6358606 G A PITPNM3 3'UTR 0.40 TCGA-NH-A5IV-01 17 6381994 6381994 G A PITPNM3 Missense_Mutation p.A217V 0.29 deleterious(0) possibly_damaging(0.834) TCGA-NH-A5IV-01 17 64059082 64059082 T - CEP112 Frame_Shift_Del p.K358Sfs*6 0.28 TCGA-NH-A5IV-01 17 65103397 65103397 G A HELZ Missense_Mutation p.P1710L 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-NH-A5IV-01 17 6546583 6546583 G A TXNDC17 3'UTR 0.57 TCGA-NH-A5IV-01 17 6590849 6590849 A G SLC13A5 Missense_Mutation p.M525T 0.11 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 17 65978454 65978454 G A BPTF 3'UTR 0.08 TCGA-NH-A5IV-01 17 67411083 67411084 AA - MAP2K6 5'UTR 0.27 TCGA-NH-A5IV-01 17 6900213 6900213 C T ALOX12 Silent p.H68H 0.41 TCGA-NH-A5IV-01 17 6930972 6930972 C T BCL6B 3'UTR 0.48 TCGA-NH-A5IV-01 17 7080385 7080385 C T ASGR1 Silent p.L66L 0.35 TCGA-NH-A5IV-01 17 7097769 7097769 G A DLG4 Silent p.S492S 0.48 TCGA-NH-A5IV-01 17 71241372 71241372 C G C17orf80 Intron 0.10 TCGA-NH-A5IV-01 17 7219468 7219468 A G NEURL4 Missense_Mutation p.C1555R 0.09 tolerated(0.33) benign(0) TCGA-NH-A5IV-01 17 7221913 7221913 C - NEURL4 Frame_Shift_Del p.L1256Cfs*12 0.17 TCGA-NH-A5IV-01 17 7230531 7230531 G A NEURL4 Missense_Mutation p.A249V 0.38 tolerated(0.44) benign(0.001) TCGA-NH-A5IV-01 17 7253486 7253486 G A ACAP1 Missense_Mutation p.A668T 0.42 tolerated(0.06) possibly_damaging(0.741) TCGA-NH-A5IV-01 17 72791719 72791719 C T TMEM104 Missense_Mutation p.T195I 0.42 tolerated(0.05) benign(0.358) TCGA-NH-A5IV-01 17 72919063 72919064 - G USH1G Frame_Shift_Ins p.T36Hfs*22 0.24 TCGA-NH-A5IV-01 17 7330633 7330633 C T C17orf74 Silent p.P441P 0.41 TCGA-NH-A5IV-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.44 TCGA-NH-A5IV-01 17 73584757 73584757 G A MYO15B 5'Flank 0.51 TCGA-NH-A5IV-01 17 73658785 73658785 C T RECQL5 Missense_Mutation p.R182H 0.42 deleterious(0.02) probably_damaging(0.93) TCGA-NH-A5IV-01 17 73754637 73754637 C T GALK1 Silent p.R279R 0.33 TCGA-NH-A5IV-01 17 73775031 73775031 C T H3F3B Missense_Mutation p.A48T 0.09 deleterious_low_confidence(0.03) benign(0.072) TCGA-NH-A5IV-01 17 73843039 73843039 C T WBP2 Missense_Mutation p.A228T 0.37 tolerated(0.1) benign(0.301) TCGA-NH-A5IV-01 17 7385775 7385775 G A SLC35G6 Missense_Mutation p.D158N 0.43 deleterious(0.01) possibly_damaging(0.515) TCGA-NH-A5IV-01 17 73887092 73887092 T A TRIM65 Missense_Mutation p.Q441L 0.09 tolerated(0.07) possibly_damaging(0.624) TCGA-NH-A5IV-01 17 73895714 73895714 G A MRPL38 Missense_Mutation p.T251M 0.37 tolerated(0.15) benign(0.021) TCGA-NH-A5IV-01 17 74072995 74072995 G A GALR2 Missense_Mutation p.R216H 0.10 tolerated(0.16) benign(0.035) TCGA-NH-A5IV-01 17 74134090 74134090 G A FOXJ1 Missense_Mutation p.R204W 0.37 deleterious(0) possibly_damaging(0.728) TCGA-NH-A5IV-01 17 74266604 74266604 C T UBALD2 3'UTR 0.64 TCGA-NH-A5IV-01 17 74734440 74734440 C A MFSD11 Silent p.S2S 0.40 TCGA-NH-A5IV-01 17 75212535 75212535 C T SEC14L1 Intron 0.35 TCGA-NH-A5IV-01 17 7579924 7579924 G A TP53 5'UTR 0.12 TCGA-NH-A5IV-01 17 76073379 76073379 C T TNRC6C Silent p.S1055S 0.23 TCGA-NH-A5IV-01 17 76083053 76083053 C T TNRC6C Silent p.H1224H 0.43 TCGA-NH-A5IV-01 17 7608922 7608923 - C EFNB3 Frame_Shift_Ins p.H5Pfs*36 0.50 TCGA-NH-A5IV-01 17 76456050 76456050 G A DNAH17 Missense_Mutation p.P3143S 0.38 probably_damaging(0.994) TCGA-NH-A5IV-01 17 76672022 76672022 A - CYTH1 3'UTR 0.36 TCGA-NH-A5IV-01 17 76870097 76870097 G - TIMP2 Intron 0.47 TCGA-NH-A5IV-01 17 7752126 7752126 C - KDM6B Frame_Shift_Del p.P842Hfs*52 0.26 TCGA-NH-A5IV-01 17 77709133 77709133 G A ENPP7 Missense_Mutation p.A231T 0.20 deleterious(0.04) benign(0.278) TCGA-NH-A5IV-01 17 78113815 78113815 C T EIF4A3 Missense_Mutation p.R166H 0.46 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 17 78318484 78318484 C T RNF213 Missense_Mutation p.R2117C 0.46 benign(0.017) TCGA-NH-A5IV-01 17 7832559 7832559 A G KCNAB3 Silent p.A65A 0.45 TCGA-NH-A5IV-01 17 78857637 78857637 G A RPTOR Silent p.P569P 0.52 TCGA-NH-A5IV-01 17 79094200 79094200 C T AATK Missense_Mutation p.S1179N 0.34 tolerated(0.75) probably_damaging(0.993) TCGA-NH-A5IV-01 17 79094562 79094563 - G AATK Frame_Shift_Ins p.L1059Tfs*5 0.24 TCGA-NH-A5IV-01 17 79100318 79100318 A G AATK Missense_Mutation p.S222P 0.44 tolerated(0.08) possibly_damaging(0.457) TCGA-NH-A5IV-01 17 79163776 79163776 C T AZI1 Splice_Site p.X1036_splice 0.16 TCGA-NH-A5IV-01 17 79409455 79409455 C T RP11-1055B8.7 Silent p.A360A 0.42 TCGA-NH-A5IV-01 17 79671702 79671702 G T SLC25A10 Missense_Mutation p.G101C 0.37 deleterious_low_confidence(0) possibly_damaging(0.725) TCGA-NH-A5IV-01 17 79826687 79826687 G - ARHGDIA 3'UTR 0.27 TCGA-NH-A5IV-01 17 79892552 79892552 G A PYCR1 Missense_Mutation p.R204C 0.39 deleterious(0) possibly_damaging(0.602) TCGA-NH-A5IV-01 17 79894014 79894015 TG - PYCR1 Frame_Shift_Del p.T41Sfs*23 0.39 TCGA-NH-A5IV-01 17 80014815 80014815 C T GPS1 Missense_Mutation p.R492W 0.39 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 17 80045045 80045045 G A FASN Missense_Mutation p.P1103L 0.45 deleterious(0) benign(0.168) TCGA-NH-A5IV-01 17 8021447 8021447 G T ALOXE3 Silent p.A86A 0.35 TCGA-NH-A5IV-01 17 80400298 80400298 G - HEXDC Frame_Shift_Del p.A532Lfs*41 0.25 TCGA-NH-A5IV-01 17 80706756 80706756 C T FN3K Missense_Mutation p.P165L 0.53 tolerated(0.17) benign(0.006) TCGA-NH-A5IV-01 17 80765497 80765497 C T TBCD Silent p.V367V 0.29 TCGA-NH-A5IV-01 17 81052388 81052388 G T METRNL 3'UTR 0.40 TCGA-NH-A5IV-01 17 8110069 8110069 G A AURKB Missense_Mutation p.T179M 0.41 deleterious(0.02) probably_damaging(0.946) TCGA-NH-A5IV-01 17 8168777 8168777 C T PFAS Missense_Mutation p.R818W 0.47 deleterious(0) benign(0.339) TCGA-NH-A5IV-01 17 8380352 8380352 G A MYH10 Silent p.N1907N 0.38 TCGA-NH-A5IV-01 17 8424544 8424544 C T MYH10 Missense_Mutation p.A673T 0.06 benign(0.004) TCGA-NH-A5IV-01 17 8439161 8439161 T C MYH10 Missense_Mutation p.Q565R 0.10 probably_damaging(0.99) TCGA-NH-A5IV-01 17 8926321 8926321 C T NTN1 Missense_Mutation p.R211C 0.43 tolerated(0.06) possibly_damaging(0.773) TCGA-NH-A5IV-01 17 9143266 9143266 G A NTN1 Missense_Mutation p.G599D 0.12 deleterious(0.05) probably_damaging(1) TCGA-NH-A5IV-01 18 13049037 13049038 TT - CEP192 Frame_Shift_Del p.F750Sfs*4 0.29 TCGA-NH-A5IV-01 18 13760149 13760149 C G RNMT 3'UTR 0.43 TCGA-NH-A5IV-01 18 13884683 13884683 G A MC2R Missense_Mutation p.R279W 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A5IV-01 18 13885062 13885062 C T MC2R Silent p.T152T 0.52 TCGA-NH-A5IV-01 18 14513768 14513768 T C POTEC Missense_Mutation p.T476A 0.38 tolerated(0.07) probably_damaging(0.931) TCGA-NH-A5IV-01 18 14534985 14534985 G A POTEC Missense_Mutation p.L278F 0.05 tolerated(0.1) probably_damaging(0.992) TCGA-NH-A5IV-01 18 15323273 15323273 G C RNU6-721P 5'Flank 0.17 TCGA-NH-A5IV-01 18 20577626 20577626 A G RBBP8 Missense_Mutation p.D691G 0.38 deleterious(0) probably_damaging(0.944) TCGA-NH-A5IV-01 18 21662913 21662914 - T TTC39C Frame_Shift_Ins p.A287Cfs*6 0.29 TCGA-NH-A5IV-01 18 2738452 2738452 G T SMCHD1 Missense_Mutation p.V1112L 0.35 tolerated(0.29) possibly_damaging(0.625) TCGA-NH-A5IV-01 18 28647928 28647928 T - DSC2 3'UTR 0.35 TCGA-NH-A5IV-01 18 28710623 28710623 C T DSC1 Missense_Mutation p.V847I 0.35 tolerated(0.21) possibly_damaging(0.496) TCGA-NH-A5IV-01 18 28898142 28898142 C T DSG1 5'UTR 0.35 TCGA-NH-A5IV-01 18 29122693 29122693 G A DSG2 Missense_Mutation p.A738T 0.44 tolerated(0.21) benign(0.073) TCGA-NH-A5IV-01 18 29437631 29437631 A G TRAPPC8 Silent p.P1020P 0.33 TCGA-NH-A5IV-01 18 31319986 31319986 A - ASXL3 Frame_Shift_Del p.V876Cfs*59 0.45 TCGA-NH-A5IV-01 18 31432799 31432799 G A NOL4 3'UTR 0.36 TCGA-NH-A5IV-01 18 33289755 33289756 - A GALNT1 3'UTR 0.39 TCGA-NH-A5IV-01 18 34335086 34335086 C A FHOD3 Missense_Mutation p.H1238N 0.04 tolerated(0.06) benign(0.078) TCGA-NH-A5IV-01 18 3456444 3456446 AGG - TGIF1 In_Frame_Del p.R168del 0.45 TCGA-NH-A5IV-01 18 34850830 34850830 A G CELF4 Missense_Mutation p.S334P 0.36 tolerated(0.14) probably_damaging(0.995) TCGA-NH-A5IV-01 18 3879551 3879551 G A DLGAP1 Missense_Mutation p.A173V 0.35 tolerated(0.13) benign(0.014) TCGA-NH-A5IV-01 18 42281357 42281357 G A SETBP1 Missense_Mutation p.E16K 0.39 deleterious_low_confidence(0) benign(0.178) TCGA-NH-A5IV-01 18 43595860 43595906 ATCACTTACGCTGCTTGAAGACTTCAAGGGCCCGCTTCAGGGTGCTA TCACTTACGCTGCTTGAAGACTTCAAGGGCCCGCTTCAGGGTGCT PSTPIP2 Splice_Site p.X71_splice 0.08 TCGA-NH-A5IV-01 18 44063705 44063705 C T LOXHD1 Silent p.G951G 0.42 TCGA-NH-A5IV-01 18 44089680 44089680 G A LOXHD1 Missense_Mutation p.P722L 0.09 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 18 44101196 44101196 A G LOXHD1 Missense_Mutation p.L601S 0.34 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 18 44149439 44149439 T C LOXHD1 Missense_Mutation p.D737G 0.07 deleterious(0) possibly_damaging(0.908) TCGA-NH-A5IV-01 18 45555913 45555913 C T ZBTB7C Silent p.P526P 0.48 TCGA-NH-A5IV-01 18 48591896 48591896 C T SMAD4 Silent p.Y353Y 0.05 TCGA-NH-A5IV-01 18 49867152 49867152 T C DCC 5'UTR 0.43 TCGA-NH-A5IV-01 18 50994368 50994368 T C DCC Missense_Mutation p.S1242P 0.12 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 18 51731417 51731417 A G MBD2 Missense_Mutation p.L218S 0.40 tolerated(0.08) benign(0.048) TCGA-NH-A5IV-01 18 5489092 5489092 C - EPB41L3 Frame_Shift_Del p.A31Rfs*52 0.17 TCGA-NH-A5IV-01 18 55103500 55103500 C G ONECUT2 Missense_Mutation p.H184Q 0.26 tolerated_low_confidence(0.12) possibly_damaging(0.795) TCGA-NH-A5IV-01 18 55217998 55217998 A G FECH Silent p.C412C 0.14 TCGA-NH-A5IV-01 18 56063658 56063658 G A NEDD4L 3'UTR 0.43 TCGA-NH-A5IV-01 18 56202424 56202424 G A ALPK2 Silent p.A1665A 0.45 TCGA-NH-A5IV-01 18 56586416 56586416 G A ZNF532 Silent p.P299P 0.26 TCGA-NH-A5IV-01 18 57363933 57363933 C T CCBE1 Missense_Mutation p.C47Y 0.53 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 18 5891681 5891681 C T TMEM200C Missense_Mutation p.A128T 0.08 tolerated(0.61) benign(0.022) TCGA-NH-A5IV-01 18 5891729 5891729 G A TMEM200C Missense_Mutation p.R112W 0.50 deleterious(0.01) possibly_damaging(0.476) TCGA-NH-A5IV-01 18 59912005 59912005 C - KIAA1468 Frame_Shift_Del p.L545Sfs*25 0.09 TCGA-NH-A5IV-01 18 60646011 60646011 G A PHLPP1 Missense_Mutation p.G1501R 0.39 tolerated(0.4) benign(0.266) TCGA-NH-A5IV-01 18 61570163 61570163 T G SERPINB2 Missense_Mutation p.L291R 0.06 deleterious(0) probably_damaging(0.977) TCGA-NH-A5IV-01 18 65179396 65179396 A - DSEL Frame_Shift_Del p.L827Wfs*85 0.10 TCGA-NH-A5IV-01 18 673069 673069 T - TYMS 3'UTR 0.25 TCGA-NH-A5IV-01 18 67993172 67993172 G A SOCS6 Missense_Mutation p.R423H 0.33 deleterious(0) probably_damaging(0.993) TCGA-NH-A5IV-01 18 6890475 6890475 C T ARHGAP28 Missense_Mutation p.T435M 0.43 deleterious(0) possibly_damaging(0.677) TCGA-NH-A5IV-01 18 71791732 71791732 C T FBXO15 Silent p.S329S 0.35 TCGA-NH-A5IV-01 18 72343528 72343528 G A ZNF407 Missense_Mutation p.V185I 0.38 tolerated(0.13) benign(0.339) TCGA-NH-A5IV-01 18 72344392 72344392 G A ZNF407 Missense_Mutation p.A473T 0.06 tolerated(0.42) benign(0.004) TCGA-NH-A5IV-01 18 72589260 72589260 C T ZNF407 Missense_Mutation p.T1662M 0.50 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 18 72776161 72776161 G A ZNF407 Missense_Mutation p.G2162S 0.38 tolerated(0.55) benign(0.002) TCGA-NH-A5IV-01 18 74091614 74091614 G - ZNF516 Frame_Shift_Del p.P819Rfs*156 0.25 TCGA-NH-A5IV-01 18 74593429 74593430 - A ZNF236 Frame_Shift_Ins p.M461Nfs*104 0.32 TCGA-NH-A5IV-01 18 74728745 74728745 T - MBP 3'UTR 0.32 TCGA-NH-A5IV-01 18 77097437 77097437 C T ATP9B Silent p.N757N 0.18 TCGA-NH-A5IV-01 18 77211003 77211003 C T NFATC1 Missense_Mutation p.R534W 0.32 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 18 77457943 77457943 G A CTDP1 Silent p.T192T 0.32 TCGA-NH-A5IV-01 18 77475327 77475327 C T CTDP1 Missense_Mutation p.R623C 0.47 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 18 77624226 77624226 G A KCNG2 Missense_Mutation p.V187M 0.35 deleterious(0) benign(0.135) TCGA-NH-A5IV-01 18 9535998 9535998 C T RALBP1 3'UTR 0.18 TCGA-NH-A5IV-01 19 1007738 1007738 G A GRIN3B Missense_Mutation p.A722T 0.28 tolerated(0.12) benign(0.058) TCGA-NH-A5IV-01 19 10197728 10197728 G A C19orf66 Missense_Mutation p.G49R 0.25 tolerated(0.37) benign(0.332) TCGA-NH-A5IV-01 19 10395249 10395249 G A ICAM1 Missense_Mutation p.G366R 0.36 tolerated(1) benign(0.228) TCGA-NH-A5IV-01 19 10398284 10398284 C T ICAM4 Intron 0.37 TCGA-NH-A5IV-01 19 10421033 10421033 T C FDX1L 3'UTR 0.43 TCGA-NH-A5IV-01 19 1062283 1062283 C T ABCA7 Missense_Mutation p.R1895C 0.40 deleterious(0) possibly_damaging(0.56) TCGA-NH-A5IV-01 19 10624846 10624846 G A S1PR5 Missense_Mutation p.T281I 0.22 tolerated(0.06) benign(0.002) TCGA-NH-A5IV-01 19 10662902 10662902 C T ATG4D Missense_Mutation p.R382C 0.31 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 19 10692298 10692298 C T AP1M2 Silent p.Q137Q 0.38 TCGA-NH-A5IV-01 19 10753927 10753927 C A SLC44A2 Intron 0.35 TCGA-NH-A5IV-01 19 10812798 10812798 G A QTRT1 Missense_Mutation p.G107S 0.08 deleterious(0.01) probably_damaging(1) TCGA-NH-A5IV-01 19 1119102 1119102 G A SBNO2 Missense_Mutation p.R479C 0.43 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 1123617 1123617 G A SBNO2 Missense_Mutation p.P182S 0.08 tolerated(0.05) benign(0.15) TCGA-NH-A5IV-01 19 11352508 11352508 C T C19orf80 3'UTR 0.50 TCGA-NH-A5IV-01 19 11530018 11530018 T C RGL3 5'Flank 0.50 TCGA-NH-A5IV-01 19 11559048 11559048 G A PRKCSH Missense_Mutation p.A373T 0.42 deleterious(0) probably_damaging(0.938) TCGA-NH-A5IV-01 19 11597604 11597604 C T ZNF653 Missense_Mutation p.V479M 0.46 deleterious(0.01) possibly_damaging(0.874) TCGA-NH-A5IV-01 19 11597688 11597688 G A ZNF653 Missense_Mutation p.R451W 0.45 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 19 11943879 11943879 A G ZNF440 3'UTR 0.44 TCGA-NH-A5IV-01 19 13008641 13008641 C T GCDH Missense_Mutation p.H403Y 0.54 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-NH-A5IV-01 19 13211520 13211520 G A LYL1 Silent p.S126S 0.43 TCGA-NH-A5IV-01 19 13220788 13220789 CA - TRMT1 Frame_Shift_Del p.V349Gfs*36 0.24 TCGA-NH-A5IV-01 19 13246459 13246459 C T NACC1 Silent p.P146P 0.07 TCGA-NH-A5IV-01 19 13318462 13318462 G A CACNA1A Missense_Mutation p.H2396Y 0.39 benign(0.291) TCGA-NH-A5IV-01 19 13910625 13910625 A G ZSWIM4 Missense_Mutation p.Y82C 0.06 deleterious(0) probably_damaging(0.966) TCGA-NH-A5IV-01 19 14000511 14000511 G A C19orf57 Silent p.G386G 0.21 TCGA-NH-A5IV-01 19 1401411 1401412 - C GAMT Frame_Shift_Ins p.A22Gfs*63 0.44 TCGA-NH-A5IV-01 19 1418348 1418348 G A DAZAP1 Silent p.P72P 0.28 TCGA-NH-A5IV-01 19 14199323 14199323 C T SAMD1 Missense_Mutation p.R402H 0.48 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 19 14517332 14517332 G A CD97 Missense_Mutation p.A671T 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-NH-A5IV-01 19 1456380 1456380 A G APC2 Missense_Mutation p.T265A 0.48 benign(0.001) TCGA-NH-A5IV-01 19 14677712 14677712 G A NDUFB7 Missense_Mutation p.A49V 0.45 deleterious(0.03) probably_damaging(0.995) TCGA-NH-A5IV-01 19 15061150 15061150 C T SLC1A6 Missense_Mutation p.V518I 0.47 tolerated(1) benign(0.008) TCGA-NH-A5IV-01 19 15134026 15134026 G A CCDC105 3'UTR 0.29 TCGA-NH-A5IV-01 19 15221140 15221140 G A SYDE1 Silent p.L352L 0.14 TCGA-NH-A5IV-01 19 15349695 15349695 T C BRD4 Silent p.Q1293Q 0.08 TCGA-NH-A5IV-01 19 15510126 15510126 G T AKAP8L Missense_Mutation p.R382S 0.41 deleterious(0.02) probably_damaging(0.931) TCGA-NH-A5IV-01 19 15536222 15536222 G A WIZ Missense_Mutation p.T480M 0.52 deleterious(0.01) possibly_damaging(0.489) TCGA-NH-A5IV-01 19 15574853 15574853 T G RASAL3 Missense_Mutation p.Q106P 0.30 tolerated(0.32) benign(0.001) TCGA-NH-A5IV-01 19 16060618 16060618 C T OR10H4 Silent p.L267L 0.39 TCGA-NH-A5IV-01 19 1612274 1612274 G A TCF3 Intron 0.38 TCGA-NH-A5IV-01 19 16212344 16212344 T - TPM4 3'UTR 0.53 TCGA-NH-A5IV-01 19 16548672 16548672 A G EPS15L1 Missense_Mutation p.F73S 0.49 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 16633877 16633877 C G CHERP Missense_Mutation p.A656P 0.48 deleterious(0.04) benign(0.424) TCGA-NH-A5IV-01 19 16636121 16636121 G A CHERP Missense_Mutation p.P558L 0.38 tolerated_low_confidence(0.12) probably_damaging(0.991) TCGA-NH-A5IV-01 19 16860227 16860227 C T NWD1 Silent p.H258H 0.35 TCGA-NH-A5IV-01 19 17038900 17038900 C T CPAMD8 Missense_Mutation p.E1144K 0.44 deleterious(0.03) probably_damaging(0.922) TCGA-NH-A5IV-01 19 17305759 17305759 C A MYO9B Missense_Mutation p.L1175I 0.14 tolerated(0.36) benign(0.002) TCGA-NH-A5IV-01 19 17392883 17392883 T C ANKLE1 Missense_Mutation p.L27P 0.41 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 17488065 17488065 G A PLVAP Silent p.Y11Y 0.47 TCGA-NH-A5IV-01 19 17608180 17608182 GGA - SLC27A1 In_Frame_Del p.E373del 0.34 TCGA-NH-A5IV-01 19 17758275 17758275 C T UNC13A Missense_Mutation p.G615R 0.39 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 18053517 18053517 A G CCDC124 Missense_Mutation p.Q71R 0.31 tolerated(0.27) benign(0.134) TCGA-NH-A5IV-01 19 18084706 18084706 C G KCNN1 Missense_Mutation p.S3R 0.32 deleterious_low_confidence(0) benign(0.221) TCGA-NH-A5IV-01 19 18376088 18376088 C T KIAA1683 Silent p.T754T 0.40 TCGA-NH-A5IV-01 19 18378117 18378117 C T KIAA1683 Missense_Mutation p.R78H 0.39 tolerated(0.8) benign(0.002) TCGA-NH-A5IV-01 19 18451433 18451433 G A PGPEP1 5'UTR 0.45 TCGA-NH-A5IV-01 19 18546182 18546182 C T ISYNA1 Missense_Mutation p.V456M 0.48 deleterious(0.03) possibly_damaging(0.485) TCGA-NH-A5IV-01 19 18572494 18572494 T C ELL Missense_Mutation p.H213R 0.50 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 18900019 18900019 C T COMP Missense_Mutation p.G160S 0.46 deleterious(0.03) possibly_damaging(0.907) TCGA-NH-A5IV-01 19 18968157 18968157 T C UPF1 Missense_Mutation p.L666P 0.37 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 19 19040154 19040154 C - HOMER3 3'UTR 0.38 TCGA-NH-A5IV-01 19 19040275 19040275 G A HOMER3 Missense_Mutation p.R355C 0.29 deleterious(0.01) unknown(0) TCGA-NH-A5IV-01 19 19230930 19230930 C T TMEM161A Missense_Mutation p.A417T 0.07 tolerated(0.52) benign(0.002) TCGA-NH-A5IV-01 19 19653418 19653418 A C CILP2 Missense_Mutation p.N276T 0.05 tolerated(0.18) probably_damaging(0.94) TCGA-NH-A5IV-01 19 19737970 19737970 C T LPAR2 Missense_Mutation p.V42I 0.44 tolerated(0.22) possibly_damaging(0.581) TCGA-NH-A5IV-01 19 19740840 19740840 T C GMIP Missense_Mutation p.S949G 0.12 tolerated(0.43) benign(0) TCGA-NH-A5IV-01 19 19741295 19741295 C A GMIP Missense_Mutation p.D842Y 0.43 deleterious(0) possibly_damaging(0.526) TCGA-NH-A5IV-01 19 19823856 19823856 G A ZNF14 Silent p.S78S 0.12 TCGA-NH-A5IV-01 19 1986518 1986518 C T BTBD2 Missense_Mutation p.G516D 0.16 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 2039675 2039675 C T MKNK2 Silent p.A445A 0.46 TCGA-NH-A5IV-01 19 2248036 2248036 C - SF3A2 Frame_Shift_Del p.P297Lfs*149 0.60 TCGA-NH-A5IV-01 19 2339889 2339889 G A SPPL2B RNA 0.40 TCGA-NH-A5IV-01 19 2389875 2389875 T C TMPRSS9 Missense_Mutation p.I31T 0.24 tolerated(0.73) benign(0.001) TCGA-NH-A5IV-01 19 2427577 2427577 A - TIMM13 5'UTR 0.12 TCGA-NH-A5IV-01 19 2733190 2733190 C T SLC39A3 Silent p.V168V 0.48 TCGA-NH-A5IV-01 19 2810444 2810444 G A THOP1 Missense_Mutation p.R533Q 0.44 tolerated(0.28) benign(0) TCGA-NH-A5IV-01 19 30018231 30018231 T C VSTM2B Missense_Mutation p.W66R 0.31 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 19 30934647 30934647 C - ZNF536 Frame_Shift_Del p.A62Hfs*11 0.39 TCGA-NH-A5IV-01 19 32930052 32930052 C T DPY19L3 Silent p.L211L 0.05 TCGA-NH-A5IV-01 19 33168081 33168081 C A RGS9BP 3'UTR 0.49 TCGA-NH-A5IV-01 19 33392243 33392243 C T CEP89 Silent p.A547A 0.06 TCGA-NH-A5IV-01 19 33696700 33696700 C T LRP3 Missense_Mutation p.R342C 0.37 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 19 3453853 3453853 C - NFIC Frame_Shift_Del p.P456Lfs*36 0.24 TCGA-NH-A5IV-01 19 35608169 35608169 G A FXYD3 5'UTR 0.30 TCGA-NH-A5IV-01 19 35757844 35757845 - C LSR Frame_Shift_Ins p.S424Qfs*10 0.43 TCGA-NH-A5IV-01 19 35769688 35769688 C T USF2 Missense_Mutation p.T272M 0.10 deleterious(0) probably_damaging(0.986) TCGA-NH-A5IV-01 19 35775901 35775901 G A HAMP Missense_Mutation p.G71S 0.13 tolerated(0.35) benign(0.093) TCGA-NH-A5IV-01 19 35843063 35843063 G T FFAR1 Silent p.V203V 0.32 TCGA-NH-A5IV-01 19 35978294 35978294 G A KRTDAP 3'UTR 0.41 TCGA-NH-A5IV-01 19 35990909 35990909 G A DMKN Missense_Mutation p.A437V 0.08 tolerated(0.3) unknown(0) TCGA-NH-A5IV-01 19 36003975 36003975 C - DMKN Frame_Shift_Del p.V135Cfs*52 0.26 TCGA-NH-A5IV-01 19 36034239 36034239 A G GAPDHS Intron 0.44 TCGA-NH-A5IV-01 19 36124656 36124656 C T RBM42 Missense_Mutation p.A251V 0.42 tolerated(0.22) unknown(0) TCGA-NH-A5IV-01 19 36213368 36213368 G A KMT2B Silent p.R855R 0.33 TCGA-NH-A5IV-01 19 36223175 36223175 C - KMT2B Frame_Shift_Del p.R1911Dfs*23 0.13 TCGA-NH-A5IV-01 19 36224193 36224193 T C KMT2B Missense_Mutation p.V2248A 0.35 benign(0.153) TCGA-NH-A5IV-01 19 36233526 36233526 A - U2AF1L4 Frame_Shift_Del p.R196Gfs*6 0.26 TCGA-NH-A5IV-01 19 36333174 36333174 G - NPHS1 Frame_Shift_Del p.Q839Rfs*8 0.32 TCGA-NH-A5IV-01 19 36369833 36369833 G A APLP1 Silent p.S564S 0.47 TCGA-NH-A5IV-01 19 3651947 3651947 G A PIP5K1C Missense_Mutation p.A335V 0.28 tolerated(0.09) benign(0.327) TCGA-NH-A5IV-01 19 36523349 36523349 C T CLIP3 Intron 0.53 TCGA-NH-A5IV-01 19 36673969 36673969 A G ZNF565 Missense_Mutation p.I300T 0.53 deleterious(0.03) benign(0.291) TCGA-NH-A5IV-01 19 37130199 37130199 G A ZNF461 Missense_Mutation p.L350F 0.10 deleterious(0.01) benign(0.376) TCGA-NH-A5IV-01 19 37211208 37211208 A G ZNF567 Missense_Mutation p.T497A 0.46 deleterious(0.01) probably_damaging(0.962) TCGA-NH-A5IV-01 19 37487930 37487930 C T ZNF568 Missense_Mutation p.T382M 0.44 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 38189747 38189747 C T ZNF607 Missense_Mutation p.A429T 0.41 tolerated(0.29) benign(0.31) TCGA-NH-A5IV-01 19 38375481 38375481 A G WDR87 3'Flank 0.36 TCGA-NH-A5IV-01 19 38375720 38375720 A G WDR87 Missense_Mutation p.V2825A 0.46 unknown(0) TCGA-NH-A5IV-01 19 38949898 38949898 C T RYR1 Silent p.G760G 0.42 TCGA-NH-A5IV-01 19 38993336 38993336 G A RYR1 Missense_Mutation p.V2602I 0.42 benign(0) TCGA-NH-A5IV-01 19 39063948 39063948 G A RYR1 Splice_Site p.X4710_splice 0.31 TCGA-NH-A5IV-01 19 39229110 39229110 G A CAPN12 Missense_Mutation p.R280W 0.23 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 39322362 39322362 C T ECH1 Silent p.R17R 0.31 TCGA-NH-A5IV-01 19 39330897 39330897 G A HNRNPL Missense_Mutation p.R358C 0.32 tolerated(0.09) benign(0.332) TCGA-NH-A5IV-01 19 39597674 39597674 C T PAPL Missense_Mutation p.H401Y 0.13 tolerated(0.47) benign(0.021) TCGA-NH-A5IV-01 19 39663913 39663913 C - PAK4 Frame_Shift_Del p.Q189Sfs*180 0.27 TCGA-NH-A5IV-01 19 39734471 39734471 G T IFNL3 Missense_Mutation p.P162Q 0.08 tolerated(0.44) benign(0.004) TCGA-NH-A5IV-01 19 39760454 39760454 C A IFNL2 Missense_Mutation p.P166Q 0.48 tolerated(0.54) benign(0.012) TCGA-NH-A5IV-01 19 39798735 39798735 G A LRFN1 Silent p.A618A 0.22 TCGA-NH-A5IV-01 19 3985408 3985408 T C EEF2 5'UTR 0.39 TCGA-NH-A5IV-01 19 39874325 39874325 G A SAMD4B 3'UTR 0.38 TCGA-NH-A5IV-01 19 40325408 40325408 A G FBL Missense_Mutation p.S281P 0.43 deleterious(0.03) benign(0.399) TCGA-NH-A5IV-01 19 40362760 40362760 C T FCGBP Missense_Mutation p.A5104T 0.39 probably_damaging(0.926) TCGA-NH-A5IV-01 19 40421620 40421620 C T FCGBP Silent p.A767A 0.08 TCGA-NH-A5IV-01 19 40432990 40432990 C T FCGBP Missense_Mutation p.A427T 0.31 benign(0.253) TCGA-NH-A5IV-01 19 40521476 40521476 C T ZNF546 Missense_Mutation p.H767Y 0.36 deleterious(0) possibly_damaging(0.559) TCGA-NH-A5IV-01 19 40827876 40827876 C - C19orf47 Frame_Shift_Del p.S395Afs*17 0.23 TCGA-NH-A5IV-01 19 40900052 40900052 C T PRX Missense_Mutation p.V1403I 0.32 tolerated(0.58) benign(0) TCGA-NH-A5IV-01 19 40903694 40903694 G A PRX Nonsense_Mutation p.Q189* 0.10 TCGA-NH-A5IV-01 19 41092705 41092705 C T SHKBP1 Silent p.I397I 0.12 TCGA-NH-A5IV-01 19 41128425 41128425 C T LTBP4 Missense_Mutation p.R1179C 0.36 deleterious(0) possibly_damaging(0.847) TCGA-NH-A5IV-01 19 41135394 41135394 G A LTBP4 Missense_Mutation p.R1604H 0.48 tolerated(0.39) possibly_damaging(0.817) TCGA-NH-A5IV-01 19 41231323 41231323 G A ITPKC Missense_Mutation p.V412I 0.41 tolerated(0.17) benign(0.175) TCGA-NH-A5IV-01 19 41265470 41265470 C T SNRPA Silent p.G127G 0.44 TCGA-NH-A5IV-01 19 41281661 41281661 T C MIA Silent p.P44P 0.41 TCGA-NH-A5IV-01 19 41285989 41285989 T C RAB4B Missense_Mutation p.F28L 0.36 deleterious(0.01) possibly_damaging(0.618) TCGA-NH-A5IV-01 19 41306435 41306435 C T EGLN2 5'UTR 0.29 TCGA-NH-A5IV-01 19 41387605 41387605 C T CYP2A7 Missense_Mutation p.V78I 0.06 tolerated(0.19) benign(0.017) TCGA-NH-A5IV-01 19 41725254 41725254 C - AXL 5'UTR 0.34 TCGA-NH-A5IV-01 19 41847921 41847921 G T TGFB1 Missense_Mutation p.R243S 0.09 tolerated(0.77) benign(0.132) TCGA-NH-A5IV-01 19 42213674 42213675 - T CEA Frame_Shift_Ins p.E47Dfs*25 0.24 TCGA-NH-A5IV-01 19 42470940 42470940 C T ATP1A3 3'UTR 0.15 TCGA-NH-A5IV-01 19 42525519 42525519 C - GRIK5 Frame_Shift_Del p.G602Afs*28 0.34 TCGA-NH-A5IV-01 19 42585595 42585595 G - ZNF574 3'UTR 0.27 TCGA-NH-A5IV-01 19 42719335 42719335 C T DEDD2 Missense_Mutation p.R133H 0.42 tolerated(0.61) benign(0.031) TCGA-NH-A5IV-01 19 42799089 42799089 A G CIC Missense_Mutation p.T1525A 0.53 benign(0.014) TCGA-NH-A5IV-01 19 4325500 4325500 G A STAP2 Missense_Mutation p.A291V 0.30 tolerated(1) benign(0.016) TCGA-NH-A5IV-01 19 43258655 43258655 G T PSG8 Missense_Mutation p.S358Y 0.24 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 44097131 44097131 C - IRGQ Frame_Shift_Del p.A307Pfs*48 0.11 TCGA-NH-A5IV-01 19 44111975 44111975 G - ZNF428 Frame_Shift_Del p.Q121Rfs*113 0.31 TCGA-NH-A5IV-01 19 44153236 44153236 C T PLAUR Missense_Mutation p.A272T 0.37 tolerated(0.3) benign(0.363) TCGA-NH-A5IV-01 19 44351409 44351409 G A ZNF283 Missense_Mutation p.G219D 0.12 tolerated(0.54) benign(0.023) TCGA-NH-A5IV-01 19 44351735 44351735 T - ZNF283 Frame_Shift_Del p.W330Gfs*10 0.28 TCGA-NH-A5IV-01 19 44470470 44470470 T C ZNF221 Silent p.H272H 0.37 TCGA-NH-A5IV-01 19 44934562 44934562 G T ZNF229 Missense_Mutation p.Q132K 0.39 deleterious(0.01) benign(0.054) TCGA-NH-A5IV-01 19 45138731 45138731 C T IGSF23 Silent p.S192S 0.36 TCGA-NH-A5IV-01 19 45202428 45202428 C T CEACAM16 5'UTR 0.47 TCGA-NH-A5IV-01 19 45262737 45262737 C - BCL3 Frame_Shift_Del p.P412Lfs*70 0.31 TCGA-NH-A5IV-01 19 45515229 45515229 G A RELB Missense_Mutation p.G67S 0.45 deleterious_low_confidence(0.01) benign(0.235) TCGA-NH-A5IV-01 19 45655116 45655116 C T NKPD1 3'UTR 0.42 TCGA-NH-A5IV-01 19 45898907 45898907 C T PPP1R13L Missense_Mutation p.A381T 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-NH-A5IV-01 19 46094442 46094442 C T GPR4 Missense_Mutation p.S228N 0.44 tolerated(0.28) benign(0.308) TCGA-NH-A5IV-01 19 46095175 46095175 G T GPR4 5'UTR 0.07 TCGA-NH-A5IV-01 19 46095666 46095666 G A GPR4 5'UTR 0.34 TCGA-NH-A5IV-01 19 46195253 46195253 G A SNRPD2 5'UTR 0.11 TCGA-NH-A5IV-01 19 46215483 46215483 G - FBXO46 Frame_Shift_Del p.P424Rfs*34 0.30 TCGA-NH-A5IV-01 19 46269925 46269925 C G SIX5 Missense_Mutation p.G431A 0.25 tolerated(0.1) probably_damaging(0.996) TCGA-NH-A5IV-01 19 46321386 46321386 G A SYMPK Missense_Mutation p.A971V 0.44 deleterious(0.01) possibly_damaging(0.908) TCGA-NH-A5IV-01 19 46393972 46393972 G - MYPOP Frame_Shift_Del p.P370Qfs*36 0.44 TCGA-NH-A5IV-01 19 46443670 46443670 G A NOVA2 Silent p.A310A 0.38 TCGA-NH-A5IV-01 19 4651994 4651994 T C TNFAIP8L1 Missense_Mutation p.V38A 0.36 deleterious(0.04) possibly_damaging(0.877) TCGA-NH-A5IV-01 19 4652008 4652008 T C TNFAIP8L1 Missense_Mutation p.Y43H 0.43 tolerated(0.06) probably_damaging(1) TCGA-NH-A5IV-01 19 4653019 4653019 A - TNFAIP8L1 3'UTR 0.23 TCGA-NH-A5IV-01 19 46623504 46623504 C T IGFL3 3'UTR 0.30 TCGA-NH-A5IV-01 19 47258903 47258903 C T FKRP Silent p.L66L 0.42 TCGA-NH-A5IV-01 19 47424162 47424162 C T ARHGAP35 Missense_Mutation p.R744C 0.36 tolerated(0.06) probably_damaging(0.958) TCGA-NH-A5IV-01 19 47424502 47424502 T - ARHGAP35 Frame_Shift_Del p.Y859Ifs*28 0.08 TCGA-NH-A5IV-01 19 47575820 47575820 A G ZC3H4 Missense_Mutation p.S531P 0.44 unknown(0) TCGA-NH-A5IV-01 19 47823575 47823575 T C C5AR1 Missense_Mutation p.Y181H 0.45 tolerated(0.55) benign(0.002) TCGA-NH-A5IV-01 19 4792859 4792859 G - FEM1A Frame_Shift_Del p.G333Afs*31 0.28 TCGA-NH-A5IV-01 19 47933648 47933648 T C SLC8A2 Missense_Mutation p.N822D 0.12 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 48204847 48204847 C T GLTSCR1 Silent p.D1286D 0.40 TCGA-NH-A5IV-01 19 48229303 48229303 C T EHD2 Missense_Mutation p.T246M 0.42 deleterious(0.01) probably_damaging(0.932) TCGA-NH-A5IV-01 19 48533672 48533672 C T CABP5 3'UTR 0.43 TCGA-NH-A5IV-01 19 48565406 48565406 C T PLA2G4C Missense_Mutation p.G379D 0.38 tolerated(1) benign(0.002) TCGA-NH-A5IV-01 19 48790269 48790269 A - ZNF114 3'UTR 0.60 TCGA-NH-A5IV-01 19 48908570 48908570 C T GRIN2D Missense_Mutation p.R349C 0.45 deleterious(0.01) possibly_damaging(0.795) TCGA-NH-A5IV-01 19 4891362 4891362 C T ARRDC5 Missense_Mutation p.R242Q 0.40 deleterious(0.03) probably_damaging(0.912) TCGA-NH-A5IV-01 19 48967672 48967672 C T KCNJ14 Missense_Mutation p.R317C 0.38 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 49002822 49002822 C G LMTK3 Missense_Mutation p.A531P 0.27 benign(0.1) TCGA-NH-A5IV-01 19 49005699 49005699 T C LMTK3 Missense_Mutation p.Y291C 0.47 possibly_damaging(0.834) TCGA-NH-A5IV-01 19 49055451 49055451 T C SULT2B1 5'UTR 0.39 TCGA-NH-A5IV-01 19 49132614 49132614 G A SPHK2 Missense_Mutation p.D517N 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-NH-A5IV-01 19 49207686 49207699 AAAAAAAAAAAAAG - FUT2 3'UTR 0.42 TCGA-NH-A5IV-01 19 49208372 49208372 T C FUT2 3'UTR 0.35 TCGA-NH-A5IV-01 19 49838700 49838701 TC - CD37 5'UTR 0.40 TCGA-NH-A5IV-01 19 49868779 49868779 G - DKKL1 Frame_Shift_Del p.G67Afs*2 0.21 TCGA-NH-A5IV-01 19 49878206 49878206 C T DKKL1 Missense_Mutation p.T217I 0.25 tolerated_low_confidence(0.11) benign(0.21) TCGA-NH-A5IV-01 19 50100789 50100789 C A PRR12 Missense_Mutation p.S1066Y 0.58 probably_damaging(0.992) TCGA-NH-A5IV-01 19 50102826 50102826 C - PRR12 Frame_Shift_Del p.P1327Lfs*44 0.23 TCGA-NH-A5IV-01 19 50139907 50139907 C T RRAS Missense_Mutation p.G141E 0.41 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 50161575 50161575 C - SCAF1 Frame_Shift_Del p.P1288Qfs*57 0.29 TCGA-NH-A5IV-01 19 50193630 50193630 T C ADM5 Silent p.A114A 0.08 TCGA-NH-A5IV-01 19 50295255 50295255 G A AP2A1 Silent p.S179S 0.09 TCGA-NH-A5IV-01 19 50393303 50393303 C T IL4I1 Missense_Mutation p.R465H 0.56 deleterious(0.02) possibly_damaging(0.806) TCGA-NH-A5IV-01 19 50394299 50394299 G A IL4I1 Silent p.S256S 0.41 TCGA-NH-A5IV-01 19 5039857 5039857 C T KDM4B Missense_Mutation p.P51L 0.39 probably_damaging(0.993) TCGA-NH-A5IV-01 19 50473791 50473791 C T SIGLEC16 RNA 0.26 TCGA-NH-A5IV-01 19 504773 504773 C T MADCAM1 Silent p.P319P 0.39 TCGA-NH-A5IV-01 19 50548468 50548468 G A ZNF473 Silent p.P256P 0.35 TCGA-NH-A5IV-01 19 50661568 50661568 G A IZUMO2 Silent p.C151C 0.37 TCGA-NH-A5IV-01 19 50764759 50764759 C A MYH14 Missense_Mutation p.L818I 0.56 deleterious(0.05) probably_damaging(0.93) TCGA-NH-A5IV-01 19 50902126 50902126 G A POLD1 Silent p.R6R 0.52 TCGA-NH-A5IV-01 19 50905546 50905546 G A POLD1 Missense_Mutation p.R225H 0.49 deleterious(0.03) probably_damaging(0.997) TCGA-NH-A5IV-01 19 50909556 50909556 C T POLD1 Missense_Mutation p.R454C 0.43 deleterious(0) probably_damaging(0.993) TCGA-NH-A5IV-01 19 51022460 51022460 G A LRRC4B Silent p.I170I 0.34 TCGA-NH-A5IV-01 19 5131444 5131444 G A KDM4B Missense_Mutation p.G558D 0.43 benign(0.023) TCGA-NH-A5IV-01 19 51582197 51582197 C T KLK14 Missense_Mutation p.A176T 0.54 tolerated(0.41) benign(0.001) TCGA-NH-A5IV-01 19 51842304 51842304 C T VSIG10L Missense_Mutation p.A523T 0.34 deleterious(0.04) benign(0.402) TCGA-NH-A5IV-01 19 5212370 5212370 C T PTPRS Missense_Mutation p.G1583S 0.44 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 19 52196590 52196590 G A SPACA6P-AS RNA 0.49 TCGA-NH-A5IV-01 19 52222464 52222464 C T HAS1 Missense_Mutation p.V233M 0.42 tolerated(0.13) possibly_damaging(0.833) TCGA-NH-A5IV-01 19 52223162 52223162 G T HAS1 Intron 0.42 TCGA-NH-A5IV-01 19 52327875 52327875 T - FPR3 Frame_Shift_Del p.F293Lfs*21 0.29 TCGA-NH-A5IV-01 19 52497123 52497123 A G ZNF615 Silent p.C413C 0.40 TCGA-NH-A5IV-01 19 52520454 52520454 A G ZNF614 Missense_Mutation p.Y133H 0.09 tolerated(0.99) benign(0) TCGA-NH-A5IV-01 19 52570498 52570498 T C ZNF841 Missense_Mutation p.T213A 0.10 tolerated(0.11) benign(0.018) TCGA-NH-A5IV-01 19 52588091 52588092 CT - ZNF841 5'UTR 0.30 TCGA-NH-A5IV-01 19 52619510 52619511 - A ZNF616 Frame_Shift_Ins p.G303Wfs*5 0.23 TCGA-NH-A5IV-01 19 52659144 52659144 C A ZNF836 Missense_Mutation p.A598S 0.27 tolerated(0.59) probably_damaging(0.948) TCGA-NH-A5IV-01 19 52888323 52888323 G A ZNF880 Missense_Mutation p.C497Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 19 52954562 52954562 C A ZNF578 5'Flank 0.39 TCGA-NH-A5IV-01 19 53116335 53116335 G A ZNF83 Missense_Mutation p.R495C 0.35 tolerated(0.07) benign(0.376) TCGA-NH-A5IV-01 19 53270383 53270383 C T ZNF600 Missense_Mutation p.C209Y 0.43 tolerated(0.14) benign(0) TCGA-NH-A5IV-01 19 53612088 53612088 T C ZNF415 Missense_Mutation p.R404G 0.43 deleterious(0.04) benign(0.182) TCGA-NH-A5IV-01 19 536297 536297 G A CDC34 Missense_Mutation p.G107R 0.30 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 19 53740054 53740054 T C ZNF677 3'UTR 0.44 TCGA-NH-A5IV-01 19 53855217 53855217 G A ZNF845 Missense_Mutation p.R430H 0.07 tolerated(0.27) benign(0.089) TCGA-NH-A5IV-01 19 53958542 53958542 C T ZNF761 RNA 0.39 TCGA-NH-A5IV-01 19 53960900 53960900 A G ZNF761 RNA 0.25 TCGA-NH-A5IV-01 19 54377367 54377367 A G MYADM Missense_Mutation p.N195S 0.36 tolerated(0.63) benign(0.001) TCGA-NH-A5IV-01 19 54377588 54377588 G A MYADM Missense_Mutation p.G269S 0.41 deleterious(0.01) possibly_damaging(0.499) TCGA-NH-A5IV-01 19 54515450 54515450 G A CACNG6 3'UTR 0.43 TCGA-NH-A5IV-01 19 54664751 54664751 A C TMC4 Missense_Mutation p.C619G 0.34 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 19 54933440 54933440 G A TTYH1 Missense_Mutation p.R165H 0.11 tolerated(0.05) probably_damaging(0.977) TCGA-NH-A5IV-01 19 54969311 54969311 G T LENG8 Missense_Mutation p.Q644H 0.38 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 19 55493792 55493792 G A NLRP2 Silent p.A242A 0.39 TCGA-NH-A5IV-01 19 55663260 55663260 C T TNNI3 Missense_Mutation p.R192H 0.35 deleterious(0) probably_damaging(0.994) TCGA-NH-A5IV-01 19 55669029 55669029 C T TNNI3 5'UTR 0.10 TCGA-NH-A5IV-01 19 55673094 55673094 G T DNAAF3 Missense_Mutation p.L262M 0.13 deleterious(0.01) probably_damaging(0.94) TCGA-NH-A5IV-01 19 55824264 55824264 G - TMEM150B Frame_Shift_Del p.P222Rfs*? 0.38 TCGA-NH-A5IV-01 19 55993383 55993383 C - ZNF628 Frame_Shift_Del p.P276Rfs*151 0.53 TCGA-NH-A5IV-01 19 55994537 55994537 C - ZNF628 Frame_Shift_Del p.Q661Sfs*63 0.21 TCGA-NH-A5IV-01 19 56041582 56041582 C T SBK2 Missense_Mutation p.V189I 0.42 tolerated(0.35) probably_damaging(0.995) TCGA-NH-A5IV-01 19 56104896 56104896 G T FIZ1 Silent p.P137P 0.37 TCGA-NH-A5IV-01 19 56113465 56113465 C - ZNF524 5'UTR 0.22 TCGA-NH-A5IV-01 19 56133736 56133736 G A ZNF784 Missense_Mutation p.A118V 0.39 tolerated(0.23) possibly_damaging(0.507) TCGA-NH-A5IV-01 19 56303730 56303730 T - NLRP11 Frame_Shift_Del p.N817Ifs*7 0.30 TCGA-NH-A5IV-01 19 56369313 56369313 C T NLRP4 Missense_Mutation p.T185M 0.08 deleterious(0.01) benign(0.37) TCGA-NH-A5IV-01 19 56561913 56561913 C T NLRP5 Silent p.C1029C 0.39 TCGA-NH-A5IV-01 19 56736058 56736058 G A ZSCAN5A Nonsense_Mutation p.R120* 0.22 TCGA-NH-A5IV-01 19 5690335 5690335 G A RPL36 5'UTR 0.25 TCGA-NH-A5IV-01 19 5707142 5707142 G A LONP1 Silent p.L359L 0.35 TCGA-NH-A5IV-01 19 57088770 57088770 G A ZNF470 Missense_Mutation p.A325T 0.35 tolerated(0.16) probably_damaging(0.987) TCGA-NH-A5IV-01 19 57133361 57133361 C A ZNF71 Missense_Mutation p.H236N 0.27 deleterious(0) probably_damaging(0.99) TCGA-NH-A5IV-01 19 57175629 57175629 G A ZNF835 Missense_Mutation p.A313V 0.34 deleterious(0) possibly_damaging(0.689) TCGA-NH-A5IV-01 19 572593 572593 G A BSG 5'UTR 0.42 TCGA-NH-A5IV-01 19 57329195 57329196 - A PEG3 Frame_Shift_Ins p.A261Cfs*2 0.27 TCGA-NH-A5IV-01 19 57333112 57333112 C T PEG3 Silent p.P192P 0.50 TCGA-NH-A5IV-01 19 57723755 57723755 T C ZNF264 Silent p.S430S 0.21 TCGA-NH-A5IV-01 19 57839612 57839612 G A ZNF543 Missense_Mutation p.G261E 0.35 deleterious(0.04) probably_damaging(0.996) TCGA-NH-A5IV-01 19 57922759 57922759 G T ZNF17 5'UTR 0.40 TCGA-NH-A5IV-01 19 57955048 57955048 A G ZNF749 Missense_Mutation p.K178E 0.42 tolerated(0.07) possibly_damaging(0.636) TCGA-NH-A5IV-01 19 57955159 57955160 - A ZNF749 Frame_Shift_Ins p.T217Nfs*3 0.28 TCGA-NH-A5IV-01 19 58352722 58352723 AT - ZNF587B Frame_Shift_Del p.I228Tfs*18 0.29 TCGA-NH-A5IV-01 19 58400236 58400236 G T ZNF814 5'UTR 0.26 TCGA-NH-A5IV-01 19 58472809 58472809 G A C19orf18 Missense_Mutation p.T161M 0.32 deleterious(0.03) benign(0.003) TCGA-NH-A5IV-01 19 58564837 58564837 C T ZSCAN1 Silent p.D215D 0.11 TCGA-NH-A5IV-01 19 5866609 5866609 C A FUT5 3'UTR 0.33 TCGA-NH-A5IV-01 19 58773360 58773360 C T ZNF544 Missense_Mutation p.P463L 0.47 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 19 58867613 58867613 C T ZNF497 Silent p.T463T 0.11 TCGA-NH-A5IV-01 19 58868037 58868037 C T ZNF497 Missense_Mutation p.R322H 0.26 deleterious(0) probably_damaging(0.973) TCGA-NH-A5IV-01 19 58879481 58879481 T A ZNF837 Missense_Mutation p.S407C 0.37 tolerated(0.18) probably_damaging(0.985) TCGA-NH-A5IV-01 19 58880269 58880269 A G ZNF837 Missense_Mutation p.V144A 0.44 tolerated(0.75) benign(0.003) TCGA-NH-A5IV-01 19 5951486 5951486 G A RANBP3 Missense_Mutation p.A67V 0.12 tolerated_low_confidence(0.15) benign(0.005) TCGA-NH-A5IV-01 19 623561 623561 T A POLRMT Missense_Mutation p.T395S 0.56 tolerated(0.07) benign(0.002) TCGA-NH-A5IV-01 19 6479014 6479014 G A DENND1C Missense_Mutation p.A77V 0.29 tolerated(0.17) benign(0.01) TCGA-NH-A5IV-01 19 6495529 6495529 G A TUBB4A Silent p.D327D 0.12 TCGA-NH-A5IV-01 19 6532821 6532822 - A TNFSF9 Frame_Shift_Ins p.N99Kfs*14 0.09 TCGA-NH-A5IV-01 19 6718155 6718155 C T C3 Missense_Mutation p.V152I 0.45 tolerated(0.08) benign(0.354) TCGA-NH-A5IV-01 19 7083850 7083850 T C ZNF557 3'UTR 0.44 TCGA-NH-A5IV-01 19 7619119 7619119 A G PNPLA6 Missense_Mutation p.D819G 0.17 deleterious(0.01) benign(0.019) TCGA-NH-A5IV-01 19 7712707 7712707 C T STXBP2 3'UTR 0.39 TCGA-NH-A5IV-01 19 7747342 7747342 C T TRAPPC5 Missense_Mutation p.A68V 0.11 tolerated(0.15) benign(0.001) TCGA-NH-A5IV-01 19 8367309 8367309 G A CD320 3'UTR 0.09 TCGA-NH-A5IV-01 19 8931941 8931941 C T ZNF558 Silent p.Q54Q 0.37 TCGA-NH-A5IV-01 19 897460 897460 C T R3HDM4 Missense_Mutation p.A262T 0.46 tolerated(0.14) benign(0.001) TCGA-NH-A5IV-01 19 9063646 9063646 G A MUC16 Missense_Mutation p.H7934Y 0.46 unknown(0) TCGA-NH-A5IV-01 19 9204762 9204762 T C OR1M1 Missense_Mutation p.V281A 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-NH-A5IV-01 19 9226093 9226093 G A OR7G1 Missense_Mutation p.A116V 0.05 tolerated(0.13) benign(0.017) TCGA-NH-A5IV-01 19 9406074 9406074 A G ZNF699 3'UTR 0.37 TCGA-NH-A5IV-01 19 9488950 9488950 A G ZNF177 5'UTR 0.41 TCGA-NH-A5IV-01 19 972245 972248 ATAC - ARID3A 3'UTR 0.36 TCGA-NH-A5IV-01 1 100343367 100343367 C G AGL Missense_Mutation p.P532A 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-NH-A5IV-01 1 100361841 100361841 G T AGL Splice_Site p.X1087_splice 0.36 TCGA-NH-A5IV-01 1 101188701 101188701 G T VCAM1 Missense_Mutation p.D156Y 0.29 deleterious(0.03) probably_damaging(0.927) TCGA-NH-A5IV-01 1 101707063 101707063 T - S1PR1 3'UTR 0.22 TCGA-NH-A5IV-01 1 10460570 10460570 C T PGD Missense_Mutation p.R69W 0.37 deleterious(0) benign(0.198) TCGA-NH-A5IV-01 1 10703049 10703050 - G CASZ1 Frame_Shift_Ins p.G1344Rfs*6 0.24 TCGA-NH-A5IV-01 1 10714490 10714490 C T CASZ1 Silent p.T608T 0.47 TCGA-NH-A5IV-01 1 10720512 10720512 G A CASZ1 Missense_Mutation p.T196M 0.23 tolerated_low_confidence(0.32) benign(0.056) TCGA-NH-A5IV-01 1 10725280 10725280 T C CASZ1 Missense_Mutation p.Y122C 0.49 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-NH-A5IV-01 1 109365817 109365817 C A AKNAD1 Intron 0.40 TCGA-NH-A5IV-01 1 109472398 109472398 T - GPSM2 Frame_Shift_Del p.F632Sfs*31 0.30 TCGA-NH-A5IV-01 1 109743490 109743490 C T KIAA1324 Missense_Mutation p.L981F 0.39 tolerated(0.23) benign(0.028) TCGA-NH-A5IV-01 1 109794800 109794800 T C CELSR2 Missense_Mutation p.V700A 0.49 deleterious(0) probably_damaging(0.963) TCGA-NH-A5IV-01 1 109795718 109795718 G A CELSR2 Missense_Mutation p.R1006Q 0.46 deleterious(0.04) probably_damaging(0.943) TCGA-NH-A5IV-01 1 110035331 110035331 A - ATXN7L2 3'UTR 0.39 TCGA-NH-A5IV-01 1 110168238 110168238 C T AMPD2 Intron 0.38 TCGA-NH-A5IV-01 1 110171839 110171839 G T AMPD2 Silent p.L614L 0.33 TCGA-NH-A5IV-01 1 110172520 110172520 C T AMPD2 Silent p.H709H 0.10 TCGA-NH-A5IV-01 1 11083427 11083427 A G TARDBP 3'UTR 0.45 TCGA-NH-A5IV-01 1 110883702 110883702 G T RBM15 Missense_Mutation p.D559Y 0.48 deleterious(0) probably_damaging(0.956) TCGA-NH-A5IV-01 1 1117796 1117797 GA - TTLL10 Frame_Shift_Del p.E298Gfs*7 0.48 TCGA-NH-A5IV-01 1 11199365 11199365 C T MTOR Missense_Mutation p.R1709H 0.40 tolerated(0.35) possibly_damaging(0.615) TCGA-NH-A5IV-01 1 113244218 113244218 G A RHOC Missense_Mutation p.R176W 0.27 deleterious(0) probably_damaging(0.967) TCGA-NH-A5IV-01 1 1133178 1133178 C T TTLL10 Missense_Mutation p.P658L 0.27 tolerated_low_confidence(0.3) benign(0.025) TCGA-NH-A5IV-01 1 114447330 114447330 G T AP4B1 Missense_Mutation p.L4I 0.10 tolerated(0.06) benign(0.193) TCGA-NH-A5IV-01 1 115110632 115110632 T G BCAS2 3'UTR 0.38 TCGA-NH-A5IV-01 1 115829420 115829420 G A NGF 5'UTR 0.42 TCGA-NH-A5IV-01 1 1168604 1168604 G A B3GALT6 Missense_Mutation p.A316T 0.28 deleterious(0.05) benign(0.201) TCGA-NH-A5IV-01 1 116930018 116930018 G - ATP1A1 Frame_Shift_Del p.F100Sfs*41 0.27 TCGA-NH-A5IV-01 1 1170363 1170363 A - B3GALT6 3'UTR 0.25 TCGA-NH-A5IV-01 1 117127581 117127581 C T IGSF3 Missense_Mutation p.S865N 0.32 tolerated(0.19) benign(0.03) TCGA-NH-A5IV-01 1 117150686 117150686 C T IGSF3 Missense_Mutation p.R367H 0.18 tolerated(0.13) probably_damaging(0.995) TCGA-NH-A5IV-01 1 117503952 117503952 C T PTGFRN Missense_Mutation p.T434M 0.45 tolerated(0.41) benign(0.006) TCGA-NH-A5IV-01 1 117554508 117554508 G A CD101 Nonsense_Mutation p.W254* 0.47 TCGA-NH-A5IV-01 1 117618239 117618239 C T TTF2 Missense_Mutation p.R345C 0.41 tolerated(0.08) benign(0.018) TCGA-NH-A5IV-01 1 118166694 118166694 G T FAM46C 3'UTR 0.47 TCGA-NH-A5IV-01 1 118167358 118167358 T - FAM46C 3'UTR 0.10 TCGA-NH-A5IV-01 1 12025563 12025563 G A PLOD1 Silent p.R499R 0.35 TCGA-NH-A5IV-01 1 12059152 12059152 G T MFN2 Missense_Mutation p.E272D 0.47 tolerated(0.74) possibly_damaging(0.864) TCGA-NH-A5IV-01 1 12073344 12073344 T A MFN2 3'UTR 0.10 TCGA-NH-A5IV-01 1 12186259 12186259 G T TNFRSF8 Silent p.P425P 0.44 TCGA-NH-A5IV-01 1 1223396 1223396 C T SCNN1D Silent p.H547H 0.06 TCGA-NH-A5IV-01 1 12318082 12318082 C T VPS13D Silent p.H344H 0.37 TCGA-NH-A5IV-01 1 1257326 1257326 C T CPSF3L Missense_Mutation p.G3D 0.37 probably_damaging(0.969) TCGA-NH-A5IV-01 1 12639405 12639405 G A DHRS3 Silent p.A125A 0.33 TCGA-NH-A5IV-01 1 12726598 12726598 G A AADACL4 Missense_Mutation p.R359H 0.39 deleterious(0.03) possibly_damaging(0.597) TCGA-NH-A5IV-01 1 1290110 1290111 GG - MXRA8 Frame_Shift_Del p.R301Gfs*85 0.49 TCGA-NH-A5IV-01 1 1309162 1309162 G A AURKAIP1 3'UTR 0.25 TCGA-NH-A5IV-01 1 14059312 14059312 T A PRDM2 Missense_Mutation p.F56I 0.37 probably_damaging(0.999) TCGA-NH-A5IV-01 1 144855751 144855751 G A PDE4DIP Missense_Mutation p.P2268S 0.16 tolerated(0.45) benign(0.002) TCGA-NH-A5IV-01 1 145282194 145282194 G A NOTCH2NL 3'UTR 0.20 TCGA-NH-A5IV-01 1 145293478 145293478 C T NBPF10 Missense_Mutation p.R25C 0.12 probably_damaging(0.92) TCGA-NH-A5IV-01 1 145416317 145416317 C G HFE2 Missense_Mutation p.T221S 0.47 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 145580486 145580487 - C PIAS3 Intron 0.18 TCGA-NH-A5IV-01 1 146672751 146672751 G A FMO5 Missense_Mutation p.A389V 0.34 tolerated(0.39) benign(0.098) TCGA-NH-A5IV-01 1 147091228 147091228 C T BCL9 Missense_Mutation p.R423W 0.46 tolerated(0.15) possibly_damaging(0.857) TCGA-NH-A5IV-01 1 147096586 147096586 C T BCL9 Silent p.Y1369Y 0.21 TCGA-NH-A5IV-01 1 147119272 147119272 C T ACP6 Missense_Mutation p.A414T 0.06 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 1 148594674 148594674 G A NBPF15 3'UTR 0.26 TCGA-NH-A5IV-01 1 149783484 149783484 T C HIST2H2BF Intron 0.39 TCGA-NH-A5IV-01 1 149881047 149881047 C T SV2A Missense_Mutation p.R419H 0.45 tolerated(0.08) probably_damaging(0.967) TCGA-NH-A5IV-01 1 149884981 149884981 C - SV2A Frame_Shift_Del p.E138Rfs*39 0.28 TCGA-NH-A5IV-01 1 149922006 149922006 C T OTUD7B Missense_Mutation p.G322R 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-NH-A5IV-01 1 150131499 150131499 G T PLEKHO1 Missense_Mutation p.K337N 0.41 tolerated(0.06) benign(0.384) TCGA-NH-A5IV-01 1 150316709 150316709 G A PRPF3 Missense_Mutation p.V500I 0.36 deleterious(0.04) probably_damaging(0.936) TCGA-NH-A5IV-01 1 150526188 150526189 - C ADAMTSL4 Frame_Shift_Ins p.R243Qfs*58 0.22 TCGA-NH-A5IV-01 1 150526851 150526851 C T ADAMTSL4 Missense_Mutation p.P381L 0.34 deleterious(0.02) benign(0.24) TCGA-NH-A5IV-01 1 150919461 150919461 G T SETDB1 Nonsense_Mutation p.G414* 0.06 TCGA-NH-A5IV-01 1 151040476 151040476 T - MLLT11 3'UTR 0.35 TCGA-NH-A5IV-01 1 151131396 151131396 C T TNFAIP8L2 Missense_Mutation p.R75C 0.34 deleterious(0) probably_damaging(0.988) TCGA-NH-A5IV-01 1 151288370 151288370 G T PI4KB Silent p.P208P 0.45 TCGA-NH-A5IV-01 1 151773813 151773813 G A LINGO4 Silent p.G456G 0.38 TCGA-NH-A5IV-01 1 152193187 152193187 A - HRNR Frame_Shift_Del p.P307Lfs*278 0.30 TCGA-NH-A5IV-01 1 152325715 152325715 G A FLG2 Missense_Mutation p.T1516I 0.43 possibly_damaging(0.832) TCGA-NH-A5IV-01 1 152749095 152749095 G A LCE1F Missense_Mutation p.R83H 0.41 tolerated_low_confidence(0.61) unknown(0) TCGA-NH-A5IV-01 1 152856894 152856894 A G SMCP 5'UTR 0.17 TCGA-NH-A5IV-01 1 152958183 152958183 A G SPRR1A 3'UTR 0.30 TCGA-NH-A5IV-01 1 153509862 153509862 G A S100A5 Silent p.S63S 0.46 TCGA-NH-A5IV-01 1 153520140 153520140 C A S100A3 3'UTR 0.19 TCGA-NH-A5IV-01 1 153701143 153701143 A G INTS3 Silent p.A11A 0.35 TCGA-NH-A5IV-01 1 153746133 153746133 G A INTS3 3'UTR 0.05 TCGA-NH-A5IV-01 1 153916842 153916842 C A DENND4B Missense_Mutation p.E3D 0.41 deleterious(0.05) benign(0.148) TCGA-NH-A5IV-01 1 154098820 154098820 G T NUP210L Silent p.S435S 0.38 TCGA-NH-A5IV-01 1 154228180 154228180 T C UBAP2L Silent p.N702N 0.06 TCGA-NH-A5IV-01 1 154530922 154530922 C - UBE2Q1 Frame_Shift_Del p.P37Rfs*5 0.33 TCGA-NH-A5IV-01 1 154530928 154530928 G C UBE2Q1 Silent p.G34G 0.36 TCGA-NH-A5IV-01 1 154931495 154931495 C T PYGO2 Silent p.V327V 0.45 TCGA-NH-A5IV-01 1 154931696 154931696 C - PYGO2 Frame_Shift_Del p.K261Sfs*3 0.23 TCGA-NH-A5IV-01 1 154988942 154988942 A G ZBTB7B Silent p.A501A 0.09 TCGA-NH-A5IV-01 1 154999188 154999188 G A DCST2 Missense_Mutation p.P449L 0.43 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 1 155006967 155006967 C T DCST1 Missense_Mutation p.R40C 0.33 deleterious(0.03) probably_damaging(0.972) TCGA-NH-A5IV-01 1 155031223 155031223 T C ADAM15 Missense_Mutation p.L652P 0.26 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 155112817 155112817 C A DPM3 5'UTR 0.08 TCGA-NH-A5IV-01 1 155165012 155165012 T - MUC1 5'Flank 0.22 TCGA-NH-A5IV-01 1 155292126 155292126 T C RUSC1 Missense_Mutation p.C188R 0.38 deleterious_low_confidence(0.04) benign(0.149) TCGA-NH-A5IV-01 1 155735973 155735973 C T GON4L Silent p.V1097V 0.47 TCGA-NH-A5IV-01 1 155851027 155851027 C T SYT11 Missense_Mutation p.R342C 0.43 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 155884186 155884186 A - KIAA0907 Intron 0.35 TCGA-NH-A5IV-01 1 156084623 156084623 A G LMNA 5'UTR 0.43 TCGA-NH-A5IV-01 1 1560978 1560978 G A MIB2 Missense_Mutation p.R421H 0.46 deleterious(0.01) probably_damaging(0.979) TCGA-NH-A5IV-01 1 156108105 156108105 T C LMNA Intron 0.50 TCGA-NH-A5IV-01 1 156437283 156437283 A T MEF2D 3'UTR 0.48 TCGA-NH-A5IV-01 1 156437284 156437284 T A MEF2D 3'UTR 0.48 TCGA-NH-A5IV-01 1 156437341 156437342 - G MEF2D 3'UTR 0.28 TCGA-NH-A5IV-01 1 1565702 1565702 C G MIB2 Missense_Mutation p.A1002G 0.35 tolerated(0.34) benign(0.008) TCGA-NH-A5IV-01 1 156642739 156642740 AG - NES Frame_Shift_Del p.L414Afs*17 0.11 TCGA-NH-A5IV-01 1 156703257 156703257 G A RRNAD1 Missense_Mutation p.R194H 0.47 tolerated(0.32) benign(0.009) TCGA-NH-A5IV-01 1 156814334 156814334 T C INSRR Missense_Mutation p.Y886C 0.05 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 1 156818822 156818822 G A INSRR Missense_Mutation p.R488C 0.36 deleterious(0) probably_damaging(0.964) TCGA-NH-A5IV-01 1 156908296 156908296 G A ARHGEF11 Missense_Mutation p.A1369V 0.56 tolerated_low_confidence(0.16) benign(0.028) TCGA-NH-A5IV-01 1 157551403 157551403 G A FCRL4 Silent p.A389A 0.33 TCGA-NH-A5IV-01 1 157551404 157551404 G A FCRL4 Missense_Mutation p.A389V 0.33 tolerated(0.36) benign(0.031) TCGA-NH-A5IV-01 1 157668305 157668305 G A FCRL3 Missense_Mutation p.T56I 0.43 tolerated(0.77) benign(0.017) TCGA-NH-A5IV-01 1 15899906 15899906 A - AGMAT 3'UTR 0.47 TCGA-NH-A5IV-01 1 159175204 159175204 A G DARC 5'UTR 0.40 TCGA-NH-A5IV-01 1 159175853 159175854 CA - DARC Frame_Shift_Del p.T213Cfs*112 0.40 TCGA-NH-A5IV-01 1 159842783 159842783 G A CCDC19 Missense_Mutation p.R510C 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-NH-A5IV-01 1 159900582 159900582 C T IGSF9 Silent p.V571V 0.36 TCGA-NH-A5IV-01 1 159912846 159912846 G - IGSF9 Frame_Shift_Del p.L52Cfs*79 0.33 TCGA-NH-A5IV-01 1 160106089 160106089 G A ATP1A2 Missense_Mutation p.R831Q 0.27 deleterious(0.03) probably_damaging(0.968) TCGA-NH-A5IV-01 1 160340457 160340457 T G NHLH1 5'UTR 0.42 TCGA-NH-A5IV-01 1 16053972 16053972 G A PLEKHM2 Missense_Mutation p.V469I 0.45 tolerated_low_confidence(0.31) benign(0.004) TCGA-NH-A5IV-01 1 160771714 160771714 G A LY9 Intron 0.39 TCGA-NH-A5IV-01 1 161092794 161092794 C T DEDD Intron 0.26 TCGA-NH-A5IV-01 1 161139799 161139799 C T PPOX Silent p.A324A 0.38 TCGA-NH-A5IV-01 1 161721675 161721675 T C DUSP12 Missense_Mutation p.W160R 0.38 tolerated(0.42) benign(0.008) TCGA-NH-A5IV-01 1 161762027 161762027 G A ATF6 Missense_Mutation p.A200T 0.42 tolerated(0.25) benign(0.012) TCGA-NH-A5IV-01 1 161953306 161953306 A - OLFML2B 3'UTR 0.17 TCGA-NH-A5IV-01 1 162039940 162039940 C T NOS1AP 5'UTR 0.41 TCGA-NH-A5IV-01 1 16461038 16461038 G A EPHA2 Missense_Mutation p.A536V 0.34 tolerated(0.72) benign(0.094) TCGA-NH-A5IV-01 1 16464621 16464621 G A EPHA2 Missense_Mutation p.R347C 0.32 deleterious(0.01) benign(0.007) TCGA-NH-A5IV-01 1 16474977 16474977 C - EPHA2 Frame_Shift_Del p.G240Vfs*153 0.35 TCGA-NH-A5IV-01 1 165533090 165533090 C - LRRC52 3'UTR 0.27 TCGA-NH-A5IV-01 1 166810277 166810277 C T POGK Silent p.D28D 0.49 TCGA-NH-A5IV-01 1 166819590 166819590 G T POGK Nonsense_Mutation p.G592* 0.29 TCGA-NH-A5IV-01 1 167307494 167307494 T C POU2F1 Intron 0.33 TCGA-NH-A5IV-01 1 16736431 16736431 G A SPATA21 Silent p.G84G 0.43 TCGA-NH-A5IV-01 1 167780075 167780075 C T ADCY10 Missense_Mutation p.V1520I 0.37 tolerated(0.12) benign(0.008) TCGA-NH-A5IV-01 1 167805641 167805641 G A ADCY10 Missense_Mutation p.A1072V 0.04 tolerated(0.13) possibly_damaging(0.78) TCGA-NH-A5IV-01 1 168037623 168037623 G A DCAF6 Missense_Mutation p.E905K 0.14 deleterious(0.02) benign(0.024) TCGA-NH-A5IV-01 1 168044783 168044783 T G DCAF6 3'UTR 0.46 TCGA-NH-A5IV-01 1 169366580 169366580 T - CCDC181 Frame_Shift_Del p.K421Sfs*6 0.51 TCGA-NH-A5IV-01 1 16945714 16945714 A G RP5-1182A14.5 3'Flank 0.08 TCGA-NH-A5IV-01 1 169699663 169699663 T C SELE Missense_Mutation p.S209G 0.40 tolerated(0.05) benign(0.151) TCGA-NH-A5IV-01 1 170961344 170961344 G A MROH9 Silent p.A356A 0.37 TCGA-NH-A5IV-01 1 171174670 171174670 C T FMO2 Silent p.H360H 0.36 TCGA-NH-A5IV-01 1 171605132 171605132 T G MYOC Missense_Mutation p.E483A 0.41 deleterious(0.01) possibly_damaging(0.515) TCGA-NH-A5IV-01 1 17304788 17304788 G - MFAP2 5'UTR 0.18 TCGA-NH-A5IV-01 1 173769311 173769311 T A CENPL 3'UTR 0.22 TCGA-NH-A5IV-01 1 173776531 173776531 A G CENPL Silent p.F98F 0.37 TCGA-NH-A5IV-01 1 173854919 173854919 G A ZBTB37 Missense_Mutation p.R390H 0.42 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 1 175328860 175328860 G A TNR Silent p.D954D 0.08 TCGA-NH-A5IV-01 1 17575624 17575624 A G PADI3 5'UTR 0.45 TCGA-NH-A5IV-01 1 175956096 175956096 T C RFWD2 Missense_Mutation p.R706G 0.34 deleterious(0) possibly_damaging(0.694) TCGA-NH-A5IV-01 1 176015368 176015368 G A RFWD2 Missense_Mutation p.A457V 0.38 tolerated(0.42) benign(0.05) TCGA-NH-A5IV-01 1 176564113 176564113 C T PAPPA2 Missense_Mutation p.A458V 0.43 tolerated(0.12) benign(0.259) TCGA-NH-A5IV-01 1 17740148 17740148 G A RCC2 Silent p.H364H 0.40 TCGA-NH-A5IV-01 1 180471186 180471186 G A ACBD6 Silent p.Y72Y 0.16 TCGA-NH-A5IV-01 1 181019222 181019222 C T MR1 Missense_Mutation p.A135V 0.04 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 1 181767497 181767497 C T CACNA1E Missense_Mutation p.R2157W 0.40 deleterious(0.01) probably_damaging(0.973) TCGA-NH-A5IV-01 1 181767892 181767892 C T CACNA1E Silent p.R2288R 0.38 TCGA-NH-A5IV-01 1 182852698 182852698 C - DHX9 Frame_Shift_Del p.L1065Cfs*20 0.27 TCGA-NH-A5IV-01 1 183881395 183881395 A - RGL1 Frame_Shift_Del p.K618Sfs*25 0.44 TCGA-NH-A5IV-01 1 183933300 183933300 A - COLGALT2 Intron 0.31 TCGA-NH-A5IV-01 1 184446567 184446567 T C C1orf21 5'UTR 0.21 TCGA-NH-A5IV-01 1 184680911 184680911 C T EDEM3 Missense_Mutation p.R546H 0.44 deleterious(0) probably_damaging(0.918) TCGA-NH-A5IV-01 1 184764518 184764518 G T FAM129A Missense_Mutation p.P794T 0.19 tolerated_low_confidence(0.23) benign(0.018) TCGA-NH-A5IV-01 1 1848210 1848210 C T CALML6 Silent p.C91C 0.33 TCGA-NH-A5IV-01 1 185269357 185269357 C T IVNS1ABP Missense_Mutation p.C454Y 0.48 deleterious(0.02) probably_damaging(0.926) TCGA-NH-A5IV-01 1 186038902 186038902 G T HMCN1 Missense_Mutation p.V2663L 0.37 probably_damaging(0.989) TCGA-NH-A5IV-01 1 186039865 186039865 C T HMCN1 Silent p.S2705S 0.32 TCGA-NH-A5IV-01 1 186157109 186157109 T C HMCN1 Silent p.C5503C 0.44 TCGA-NH-A5IV-01 1 186644449 186644449 T C PTGS2 Missense_Mutation p.Y446C 0.37 deleterious(0.01) possibly_damaging(0.574) TCGA-NH-A5IV-01 1 192335245 192335245 T - RGS21 Frame_Shift_Del p.L152Cfs*7 0.09 TCGA-NH-A5IV-01 1 192779369 192779369 A - RGS2 Frame_Shift_Del p.S64Afs*25 0.29 TCGA-NH-A5IV-01 1 193038154 193038154 T - TROVE2 Intron 0.11 TCGA-NH-A5IV-01 1 19630621 19630622 - A AKR7A2 3'UTR 0.28 TCGA-NH-A5IV-01 1 196749041 196749041 C T CFHR3 Missense_Mutation p.A123V 0.39 tolerated(0.11) benign(0.001) TCGA-NH-A5IV-01 1 196758987 196758987 C T CFHR3 Intron 0.23 TCGA-NH-A5IV-01 1 197071600 197071600 T - ASPM Frame_Shift_Del p.M2261* 0.28 TCGA-NH-A5IV-01 1 197326065 197326065 C T CRB1 Missense_Mutation p.R365C 0.14 tolerated(0.12) possibly_damaging(0.846) TCGA-NH-A5IV-01 1 198266289 198266289 C T NEK7 Silent p.D239D 0.43 TCGA-NH-A5IV-01 1 200378559 200378559 G - ZNF281 Frame_Shift_Del p.P92Lfs*7 0.29 TCGA-NH-A5IV-01 1 200878399 200878399 G T C1orf106 Missense_Mutation p.W278L 0.36 tolerated(0.61) benign(0.256) TCGA-NH-A5IV-01 1 200969632 200969632 G A KIF21B Missense_Mutation p.P524L 0.38 tolerated(0.16) benign(0.01) TCGA-NH-A5IV-01 1 200973474 200973474 C - KIF21B Frame_Shift_Del p.G337Afs*7 0.33 TCGA-NH-A5IV-01 1 201184713 201184713 A G IGFN1 Silent p.P3014P 0.38 TCGA-NH-A5IV-01 1 201193982 201193982 G A IGFN1 Missense_Mutation p.S3489N 0.38 benign(0.343) TCGA-NH-A5IV-01 1 201195247 201195247 G A IGFN1 Silent p.Q3594Q 0.31 TCGA-NH-A5IV-01 1 201982148 201982148 C T ELF3 Silent p.G224G 0.17 TCGA-NH-A5IV-01 1 20302211 20302211 T C PLA2G2A Missense_Mutation p.S140G 0.39 tolerated(0.11) benign(0.031) TCGA-NH-A5IV-01 1 203188393 203188393 C T CHIT1 Missense_Mutation p.R327Q 0.29 tolerated(0.44) benign(0) TCGA-NH-A5IV-01 1 203816503 203816504 - A ZC3H11A Frame_Shift_Ins p.H415Tfs*23 0.33 TCGA-NH-A5IV-01 1 204199571 204199571 G - PLEKHA6 Frame_Shift_Del p.D852Tfs*20 0.32 TCGA-NH-A5IV-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.23 TCGA-NH-A5IV-01 1 204511976 204511976 G A MDM4 Silent p.E192E 0.39 TCGA-NH-A5IV-01 1 204951076 204951076 C T NFASC Nonsense_Mutation p.R800* 0.40 TCGA-NH-A5IV-01 1 204956638 204956638 A G NFASC Missense_Mutation p.M855V 0.33 deleterious(0.04) benign(0.002) TCGA-NH-A5IV-01 1 205057827 205057827 A G RBBP5 3'UTR 0.33 TCGA-NH-A5IV-01 1 205119888 205119888 A G DSTYK Missense_Mutation p.L796S 0.45 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 205210827 205210827 C T TMCC2 Silent p.Y134Y 0.36 TCGA-NH-A5IV-01 1 205238587 205238587 C T TMCC2 Silent p.T419T 0.30 TCGA-NH-A5IV-01 1 205312365 205312365 G A KLHDC8A Missense_Mutation p.T123M 0.39 deleterious(0.02) benign(0.047) TCGA-NH-A5IV-01 1 205687340 205687340 T C NUCKS1 3'UTR 0.38 TCGA-NH-A5IV-01 1 206658600 206658600 C T IKBKE Missense_Mutation p.R525W 0.34 deleterious(0.01) benign(0.339) TCGA-NH-A5IV-01 1 207013307 207013307 C T IL19 Missense_Mutation p.A146V 0.46 deleterious(0) probably_damaging(0.981) TCGA-NH-A5IV-01 1 208391044 208391044 C T PLXNA2 Missense_Mutation p.G75D 0.38 tolerated(0.52) benign(0.363) TCGA-NH-A5IV-01 1 20880637 20880637 G - FAM43B 3'UTR 0.33 TCGA-NH-A5IV-01 1 209773452 209773452 A - CAMK1G Frame_Shift_Del p.K74Rfs*8 0.22 TCGA-NH-A5IV-01 1 209974588 209974588 A - IRF6 Frame_Shift_Del p.F57Lfs*6 0.11 TCGA-NH-A5IV-01 1 210006589 210006589 T C DIEXF Missense_Mutation p.S150P 0.45 tolerated(0.07) benign(0.001) TCGA-NH-A5IV-01 1 210415062 210415062 T A SERTAD4 Missense_Mutation p.F151I 0.37 deleterious(0.01) benign(0.045) TCGA-NH-A5IV-01 1 211846977 211846977 G A NEK2 Missense_Mutation p.H135Y 0.38 tolerated(0.07) benign(0.102) TCGA-NH-A5IV-01 1 212115309 212115309 T C INTS7 Missense_Mutation p.I916V 0.34 tolerated(0.76) benign(0.001) TCGA-NH-A5IV-01 1 212799254 212799255 - T FAM71A Frame_Shift_Ins p.G346Wfs*73 0.23 TCGA-NH-A5IV-01 1 214178543 214178543 A G PROX1 Silent p.K587K 0.09 TCGA-NH-A5IV-01 1 214546124 214546124 G A PTPN14 Missense_Mutation p.T989M 0.37 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 1 214556893 214556893 C T PTPN14 Missense_Mutation p.A769T 0.13 tolerated(0.72) benign(0.007) TCGA-NH-A5IV-01 1 214820525 214820525 G C CENPF Missense_Mutation p.V2538L 0.35 benign(0.003) TCGA-NH-A5IV-01 1 21548309 21548309 G A ECE1 Silent p.N689N 0.41 TCGA-NH-A5IV-01 1 215807811 215807812 - C USH2A Frame_Shift_Ins p.E5096Gfs*82 0.29 TCGA-NH-A5IV-01 1 216498827 216498827 A G USH2A Silent p.P321P 0.38 TCGA-NH-A5IV-01 1 218520021 218520021 T - TGFB2 5'UTR 0.41 TCGA-NH-A5IV-01 1 218609371 218609371 A - TGFB2 Frame_Shift_Del p.N302Tfs*10 0.42 TCGA-NH-A5IV-01 1 21902394 21902394 C - ALPL Frame_Shift_Del p.R391Vfs*12 0.32 TCGA-NH-A5IV-01 1 22141014 22141014 C T LDLRAD2 Missense_Mutation p.A70V 0.39 deleterious(0.04) probably_damaging(0.959) TCGA-NH-A5IV-01 1 22165488 22165488 G A HSPG2 Missense_Mutation p.P3327L 0.35 probably_damaging(1) TCGA-NH-A5IV-01 1 22304889 22304889 G A CELA3B Missense_Mutation p.R24H 0.31 tolerated(0.25) benign(0) TCGA-NH-A5IV-01 1 223177321 223177321 A - DISP1 Frame_Shift_Del p.N862Tfs*64 0.31 TCGA-NH-A5IV-01 1 223177898 223177898 C T DISP1 Silent p.A1053A 0.43 TCGA-NH-A5IV-01 1 224517852 224517852 G A NVL 5'UTR 0.42 TCGA-NH-A5IV-01 1 224566912 224566912 A - CNIH4 3'UTR 0.23 TCGA-NH-A5IV-01 1 224606082 224606082 C T WDR26 Missense_Mutation p.R300H 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-NH-A5IV-01 1 224612274 224612274 C T WDR26 Missense_Mutation p.R237H 0.47 deleterious(0) probably_damaging(0.964) TCGA-NH-A5IV-01 1 225231483 225231483 G A DNAH14 Missense_Mutation p.M602I 0.43 benign(0.001) TCGA-NH-A5IV-01 1 225525823 225525823 A - DNAH14 Frame_Shift_Del p.G3367Dfs*5 0.33 TCGA-NH-A5IV-01 1 227170434 227170434 C T ADCK3 Silent p.S303S 0.32 TCGA-NH-A5IV-01 1 227235660 227235660 C T CDC42BPA Missense_Mutation p.G986R 0.32 tolerated(0.23) benign(0.038) TCGA-NH-A5IV-01 1 227922402 227922402 G A JMJD4 Silent p.G172G 0.08 TCGA-NH-A5IV-01 1 228109493 228109493 G A WNT9A Missense_Mutation p.S275L 0.53 tolerated(0.36) benign(0.146) TCGA-NH-A5IV-01 1 228210411 228210411 C T WNT3A Missense_Mutation p.P39S 0.44 deleterious(0.03) benign(0.186) TCGA-NH-A5IV-01 1 228285409 228285409 A G ARF1 Missense_Mutation p.N126S 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.583) TCGA-NH-A5IV-01 1 228334627 228334627 T C GUK1 Missense_Mutation p.L101P 0.05 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 1 228504625 228504625 G A OBSCN Missense_Mutation p.A5458T 0.40 possibly_damaging(0.46) TCGA-NH-A5IV-01 1 228506631 228506632 - C OBSCN Frame_Shift_Ins p.E5686Rfs*7 0.27 TCGA-NH-A5IV-01 1 228553261 228553261 C T OBSCN Missense_Mutation p.R7312W 0.40 probably_damaging(0.995) TCGA-NH-A5IV-01 1 229772742 229772742 C A URB2 Silent p.A794A 0.35 TCGA-NH-A5IV-01 1 230914858 230914858 G - CAPN9 Frame_Shift_Del p.G366Afs*15 0.28 TCGA-NH-A5IV-01 1 231042457 231042457 T C TTC13 3'UTR 0.16 TCGA-NH-A5IV-01 1 231402129 231402129 G A GNPAT Missense_Mutation p.R344Q 0.35 deleterious(0.02) benign(0.048) TCGA-NH-A5IV-01 1 232574909 232574909 C T SIPA1L2 Missense_Mutation p.G1326S 0.35 tolerated(0.92) benign(0.001) TCGA-NH-A5IV-01 1 234510065 234510065 A G COA6 Missense_Mutation p.E71G 0.36 deleterious(0.03) possibly_damaging(0.625) TCGA-NH-A5IV-01 1 235634239 235634239 G A B3GALNT2 Silent p.D229D 0.46 TCGA-NH-A5IV-01 1 236371527 236371527 T - GPR137B 3'UTR 0.25 TCGA-NH-A5IV-01 1 236899002 236899002 T - ACTN2 Frame_Shift_Del p.F256Lfs*20 0.24 TCGA-NH-A5IV-01 1 23696813 23696813 C - C1orf213 3'UTR 0.28 TCGA-NH-A5IV-01 1 23697093 23697093 C T C1orf213 3'UTR 0.49 TCGA-NH-A5IV-01 1 237016288 237016288 C A MTR Missense_Mutation p.P618H 0.43 deleterious(0.03) probably_damaging(0.926) TCGA-NH-A5IV-01 1 237550644 237550644 G A RYR2 Missense_Mutation p.V214M 0.16 possibly_damaging(0.84) TCGA-NH-A5IV-01 1 23767698 23767698 G T ASAP3 Missense_Mutation p.L281M 0.35 tolerated(0.16) benign(0.08) TCGA-NH-A5IV-01 1 240255632 240255632 T C FMN2 Missense_Mutation p.F75L 0.44 unknown(0) TCGA-NH-A5IV-01 1 240256851 240256851 G A FMN2 Missense_Mutation p.R481H 0.45 unknown(0) TCGA-NH-A5IV-01 1 24106364 24106364 A G PITHD1 Missense_Mutation p.N85D 0.43 tolerated(0.09) benign(0.168) TCGA-NH-A5IV-01 1 242161906 242161906 T C MAP1LC3C Missense_Mutation p.Y44C 0.32 deleterious(0.02) possibly_damaging(0.669) TCGA-NH-A5IV-01 1 243388560 243388560 A - CEP170 Frame_Shift_Del p.L8Wfs*2 0.27 TCGA-NH-A5IV-01 1 2433896 2433896 C - PLCH2 Frame_Shift_Del p.P977Rfs*17 0.20 TCGA-NH-A5IV-01 1 244220229 244220230 CT - ZBTB18 3'UTR 0.27 TCGA-NH-A5IV-01 1 245849582 245849582 G A KIF26B Silent p.P1099P 0.28 TCGA-NH-A5IV-01 1 24684918 24684918 C - STPG1 3'UTR 0.34 TCGA-NH-A5IV-01 1 247320684 247320684 T C ZNF124 Intron 0.03 TCGA-NH-A5IV-01 1 247978194 247978194 G T OR14A16 Missense_Mutation p.P280T 0.35 deleterious(0) probably_damaging(0.992) TCGA-NH-A5IV-01 1 248084686 248084686 G A OR2T8 Missense_Mutation p.A123T 0.32 deleterious(0.02) possibly_damaging(0.45) TCGA-NH-A5IV-01 1 248343361 248343361 C T OR2M2 Missense_Mutation p.T25M 0.41 tolerated(0.2) benign(0.14) TCGA-NH-A5IV-01 1 248436750 248436750 C T OR2T33 Missense_Mutation p.A123T 0.15 deleterious(0.02) possibly_damaging(0.45) TCGA-NH-A5IV-01 1 248789603 248789603 G A OR2T11 Missense_Mutation p.T276I 0.17 deleterious(0) probably_damaging(0.956) TCGA-NH-A5IV-01 1 24979029 24979029 G A SRRM1 Missense_Mutation p.R277Q 0.45 unknown(0) TCGA-NH-A5IV-01 1 24979099 24979099 G T SRRM1 Silent p.R300R 0.30 TCGA-NH-A5IV-01 1 25701842 25701842 G A RHCE Missense_Mutation p.T384I 0.03 deleterious(0) probably_damaging(0.984) TCGA-NH-A5IV-01 1 25715483 25715483 C - RHCE Frame_Shift_Del p.G308Efs*51 0.18 TCGA-NH-A5IV-01 1 25757549 25757549 A G TMEM57 5'UTR 0.43 TCGA-NH-A5IV-01 1 25825033 25825033 A - TMEM57 3'UTR 0.35 TCGA-NH-A5IV-01 1 26488398 26488398 G C FAM110D Missense_Mutation p.G206R 0.19 tolerated(0.14) benign(0.011) TCGA-NH-A5IV-01 1 26489030 26489030 A G FAM110D 3'UTR 0.08 TCGA-NH-A5IV-01 1 26497226 26497226 G A ZNF593 3'UTR 0.30 TCGA-NH-A5IV-01 1 26898094 26898094 C T RPS6KA1 Missense_Mutation p.A591V 0.38 deleterious(0) probably_damaging(0.982) TCGA-NH-A5IV-01 1 27106727 27106727 C - ARID1A Frame_Shift_Del p.P2114Rfs*21 0.31 TCGA-NH-A5IV-01 1 27206059 27206059 G A GPN2 3'UTR 0.36 TCGA-NH-A5IV-01 1 27206210 27206210 T C GPN2 Silent p.A297A 0.13 TCGA-NH-A5IV-01 1 27219896 27219896 A G GPATCH3 Silent p.S365S 0.38 TCGA-NH-A5IV-01 1 27660675 27660675 G A TMEM222 Missense_Mutation p.V148M 0.35 deleterious(0) probably_damaging(0.992) TCGA-NH-A5IV-01 1 27720340 27720340 C G GPR3 Nonsense_Mutation p.S13* 0.35 TCGA-NH-A5IV-01 1 27874815 27874815 G A AHDC1 Missense_Mutation p.P1271L 0.24 deleterious(0) possibly_damaging(0.859) TCGA-NH-A5IV-01 1 28541460 28541460 C G DNAJC8 Missense_Mutation p.R76S 0.40 deleterious(0.01) possibly_damaging(0.596) TCGA-NH-A5IV-01 1 28562758 28562758 G T ATPIF1 Missense_Mutation p.A22S 0.46 tolerated(0.29) benign(0.052) TCGA-NH-A5IV-01 1 28564508 28564508 A G ATPIF1 3'UTR 0.53 TCGA-NH-A5IV-01 1 28920278 28920278 C A RAB42 5'UTR 0.29 TCGA-NH-A5IV-01 1 32165417 32165417 G A COL16A1 Missense_Mutation p.T88M 0.43 unknown(0) TCGA-NH-A5IV-01 1 32542825 32542825 A G TMEM39B Missense_Mutation p.T166A 0.12 tolerated(0.63) benign(0) TCGA-NH-A5IV-01 1 32568355 32568356 - G TMEM39B 3'UTR 0.26 TCGA-NH-A5IV-01 1 32689686 32689686 G T EIF3I Missense_Mutation p.G50C 0.48 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 33060736 33060736 G A ZBTB8A Missense_Mutation p.R302H 0.36 probably_damaging(0.976) TCGA-NH-A5IV-01 1 33231312 33231312 G A KIAA1522 Intron 0.44 TCGA-NH-A5IV-01 1 33557704 33557704 C T ADC Silent p.C111C 0.31 TCGA-NH-A5IV-01 1 33796977 33796977 G A PHC2 Missense_Mutation p.R659C 0.39 deleterious(0) probably_damaging(0.985) TCGA-NH-A5IV-01 1 33960459 33960459 G A ZSCAN20 Missense_Mutation p.A839T 0.39 tolerated(0.07) benign(0.01) TCGA-NH-A5IV-01 1 34090774 34090774 C T CSMD2 Missense_Mutation p.V1753M 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-NH-A5IV-01 1 34164424 34164424 C T CSMD2 Missense_Mutation p.R1245Q 0.26 tolerated(0.14) benign(0.388) TCGA-NH-A5IV-01 1 34498248 34498248 C T CSMD2 Missense_Mutation p.R115H 0.43 tolerated(0.66) benign(0.001) TCGA-NH-A5IV-01 1 34554580 34554580 C T CSMD2 Silent p.T94T 0.53 TCGA-NH-A5IV-01 1 3511924 3511924 G A MEGF6 Silent p.P118P 0.37 TCGA-NH-A5IV-01 1 3547656 3547656 G A WRAP73 Silent p.C422C 0.51 TCGA-NH-A5IV-01 1 3547988 3547988 A T WRAP73 Intron 0.07 TCGA-NH-A5IV-01 1 35577455 35577455 A G ZMYM1 Missense_Mutation p.I348M 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 35881112 35881112 A G ZMYM4 Missense_Mutation p.K1369R 0.40 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 1 36026541 36026541 C T NCDN Silent p.A263A 0.08 TCGA-NH-A5IV-01 1 36509104 36509104 C T AGO3 Silent p.H743H 0.37 TCGA-NH-A5IV-01 1 36645140 36645140 G A MAP7D1 Missense_Mutation p.A738T 0.36 unknown(0) TCGA-NH-A5IV-01 1 36786552 36786552 C T SH3D21 Silent p.S724S 0.30 TCGA-NH-A5IV-01 1 36921858 36921858 T C MRPS15 Missense_Mutation p.Y189C 0.38 deleterious(0) probably_damaging(0.935) TCGA-NH-A5IV-01 1 38288084 38288084 C T MTF1 Silent p.P492P 0.42 TCGA-NH-A5IV-01 1 38327737 38327737 T A INPP5B 3'Flank 0.42 TCGA-NH-A5IV-01 1 39768712 39768712 C - MACF1 Frame_Shift_Del p.P924Hfs*52 0.18 TCGA-NH-A5IV-01 1 39798708 39798709 - T MACF1 Intron 0.26 TCGA-NH-A5IV-01 1 39854067 39854067 C T MACF1 Missense_Mutation p.H3123Y 0.48 benign(0.017) TCGA-NH-A5IV-01 1 39880356 39880356 T - KIAA0754 3'UTR 0.28 TCGA-NH-A5IV-01 1 40219109 40219109 C T PPIE Intron 0.23 TCGA-NH-A5IV-01 1 40432499 40432499 G A MFSD2A Silent p.Q287Q 0.33 TCGA-NH-A5IV-01 1 41101710 41101710 C T RIMS3 Silent p.L79L 0.12 TCGA-NH-A5IV-01 1 41289846 41289846 C T KCNQ4 Missense_Mutation p.P403L 0.49 deleterious(0.03) benign(0.011) TCGA-NH-A5IV-01 1 41467893 41467893 G A CTPS1 Missense_Mutation p.A386T 0.11 tolerated(0.12) benign(0.003) TCGA-NH-A5IV-01 1 42657165 42657165 G A FOXJ3 Missense_Mutation p.P387L 0.43 tolerated_low_confidence(0.06) benign(0.166) TCGA-NH-A5IV-01 1 43315148 43315148 A G ZNF691 5'UTR 0.34 TCGA-NH-A5IV-01 1 43812119 43812119 C - MPL Frame_Shift_Del p.I330Sfs*39 0.26 TCGA-NH-A5IV-01 1 45115597 45115597 G A RNF220 Missense_Mutation p.V533M 0.32 deleterious(0) probably_damaging(0.935) TCGA-NH-A5IV-01 1 45162779 45162779 T C C1orf228 Missense_Mutation p.M71T 0.51 tolerated(0.13) possibly_damaging(0.888) TCGA-NH-A5IV-01 1 45484013 45484013 T C ZSWIM5 3'UTR 0.57 TCGA-NH-A5IV-01 1 45973941 45973941 C T MMACHC Missense_Mutation p.R112C 0.31 deleterious(0) probably_damaging(0.959) TCGA-NH-A5IV-01 1 46073985 46073985 G A NASP Missense_Mutation p.E468K 0.39 deleterious_low_confidence(0.01) benign(0.427) TCGA-NH-A5IV-01 1 46088967 46088967 G A CCDC17 Missense_Mutation p.R139W 0.21 tolerated(0.05) benign(0.077) TCGA-NH-A5IV-01 1 46206844 46206844 G A IPP Silent p.C151C 0.14 TCGA-NH-A5IV-01 1 46509259 46509259 T A PIK3R3 3'UTR 0.31 TCGA-NH-A5IV-01 1 47279221 47279221 C T CYP4B1 Missense_Mutation p.A188V 0.59 deleterious(0.01) benign(0.087) TCGA-NH-A5IV-01 1 47338935 47338935 T A CYP4Z2P RNA 0.38 TCGA-NH-A5IV-01 1 47398493 47398493 C T CYP4A11 Missense_Mutation p.R435H 0.35 deleterious(0.02) possibly_damaging(0.876) TCGA-NH-A5IV-01 1 49224836 49224836 C T BEND5 Missense_Mutation p.V161M 0.48 tolerated_low_confidence(0.47) benign(0.001) TCGA-NH-A5IV-01 1 51767711 51767711 G A TTC39A Intron 0.38 TCGA-NH-A5IV-01 1 52306078 52306078 C T NRD1 Silent p.E150E 0.07 TCGA-NH-A5IV-01 1 52800416 52800416 C A ZFYVE9 Missense_Mutation p.L1216I 0.39 tolerated(0.07) probably_damaging(0.968) TCGA-NH-A5IV-01 1 52876864 52876864 C T PRPF38A Nonsense_Mutation p.R164* 0.33 TCGA-NH-A5IV-01 1 55247254 55247254 C T TTC22 Missense_Mutation p.A458T 0.40 deleterious(0.04) possibly_damaging(0.834) TCGA-NH-A5IV-01 1 55562760 55562760 C T USP24 Missense_Mutation p.R1934Q 0.39 tolerated(0.59) possibly_damaging(0.476) TCGA-NH-A5IV-01 1 5923373 5923373 A G NPHP4 Silent p.H1411H 0.08 TCGA-NH-A5IV-01 1 60373573 60373573 G T CYP2J2 Missense_Mutation p.F296L 0.28 deleterious(0.03) possibly_damaging(0.887) TCGA-NH-A5IV-01 1 6162034 6162034 G A CHD5 3'UTR 0.06 TCGA-NH-A5IV-01 1 62365265 62365266 GA - INADL Frame_Shift_Del p.E1050Rfs*11 0.34 TCGA-NH-A5IV-01 1 62516653 62516653 G A INADL Missense_Mutation p.E1350K 0.37 tolerated(0.13) benign(0.028) TCGA-NH-A5IV-01 1 6257793 6257794 - C RPL22 Frame_Shift_Ins p.K13Qfs*12 0.29 TCGA-NH-A5IV-01 1 62579803 62579803 C T INADL Silent p.L1514L 0.15 TCGA-NH-A5IV-01 1 6314680 6314680 C A GPR153 Missense_Mutation p.A96S 0.43 tolerated(0.13) probably_damaging(0.999) TCGA-NH-A5IV-01 1 6528590 6528590 G A PLEKHG5 Missense_Mutation p.T848M 0.45 tolerated(0.15) possibly_damaging(0.725) TCGA-NH-A5IV-01 1 65330630 65330630 T - JAK1 Frame_Shift_Del p.N339Ifs*3 0.28 TCGA-NH-A5IV-01 1 66101981 66101981 A G LEPR Silent p.S927S 0.29 TCGA-NH-A5IV-01 1 6637131 6637131 G A TAS1R1 Splice_Site p.X532_splice 0.24 TCGA-NH-A5IV-01 1 6639180 6639180 G A TAS1R1 Missense_Mutation p.A688T 0.36 tolerated(0.46) benign(0.034) TCGA-NH-A5IV-01 1 6653603 6653603 G A KLHL21 Missense_Mutation p.A539V 0.36 tolerated(0.29) benign(0.102) TCGA-NH-A5IV-01 1 66713250 66713250 G A PDE4B Missense_Mutation p.R130H 0.30 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 6680108 6680108 G A PHF13 Silent p.A129A 0.47 TCGA-NH-A5IV-01 1 71532487 71532487 T - ZRANB2 Frame_Shift_Del p.R301Dfs*38 0.29 TCGA-NH-A5IV-01 1 77510060 77510060 G A ST6GALNAC5 Missense_Mutation p.A145T 0.29 probably_damaging(1) TCGA-NH-A5IV-01 1 78398877 78398877 A - NEXN Intron 0.82 TCGA-NH-A5IV-01 1 7854067 7854067 C T PER3 Missense_Mutation p.R214C 0.39 tolerated(0.11) possibly_damaging(0.876) TCGA-NH-A5IV-01 1 79404887 79404887 T C ELTD1 Missense_Mutation p.K128E 0.37 deleterious(0.05) benign(0.22) TCGA-NH-A5IV-01 1 82372784 82372784 G A LPHN2 Silent p.P52P 0.47 TCGA-NH-A5IV-01 1 82409181 82409181 G A LPHN2 Missense_Mutation p.R309H 0.40 deleterious(0) probably_damaging(0.993) TCGA-NH-A5IV-01 1 8415075 8415075 T - RERE 3'UTR 0.32 TCGA-NH-A5IV-01 1 8415571 8415571 G A RERE Silent p.A1525A 0.36 TCGA-NH-A5IV-01 1 84679893 84679893 C T PRKACB Nonsense_Mutation p.Q322* 0.07 TCGA-NH-A5IV-01 1 84981989 84981989 A - SPATA1 RNA 0.26 TCGA-NH-A5IV-01 1 85570248 85570248 A G WDR63 Missense_Mutation p.I507M 0.42 tolerated(0.1) benign(0.216) TCGA-NH-A5IV-01 1 8924065 8924065 C - ENO1 Frame_Shift_Del p.D318Mfs*5 0.29 TCGA-NH-A5IV-01 1 89523819 89523819 G A GBP1 Missense_Mutation p.R244C 0.46 tolerated(0.05) benign(0.001) TCGA-NH-A5IV-01 1 89578193 89578193 T C GBP2 Missense_Mutation p.K442E 0.36 tolerated(0.77) benign(0.028) TCGA-NH-A5IV-01 1 89586856 89586856 G A GBP2 Silent p.L96L 0.40 TCGA-NH-A5IV-01 1 9017267 9017267 C T CA6 Missense_Mutation p.H111Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 90400538 90400538 C T LRRC8D Silent p.V637V 0.18 TCGA-NH-A5IV-01 1 90470860 90470860 T C ZNF326 Intron 0.39 TCGA-NH-A5IV-01 1 9099625 9099625 T C SLC2A5 Missense_Mutation p.M328V 0.36 tolerated(0.26) benign(0.044) TCGA-NH-A5IV-01 1 91182377 91182377 G - BARHL2 Frame_Shift_Del p.Q126Sfs*18 0.11 TCGA-NH-A5IV-01 1 92528794 92528794 A G EPHX4 Missense_Mutation p.N347S 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A5IV-01 1 94037327 94037327 G A BCAR3 Missense_Mutation p.A625V 0.39 deleterious(0.04) benign(0.444) TCGA-NH-A5IV-01 1 95360667 95360667 T - SLC44A3 3'UTR 0.19 TCGA-NH-A5IV-01 1 9613740 9613740 G T SLC25A33 Missense_Mutation p.R38L 0.39 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 1 97771791 97771791 A - DPYD Frame_Shift_Del p.F707Lfs*4 0.22 TCGA-NH-A5IV-01 1 9780830 9780830 C T PIK3CD Missense_Mutation p.R518W 0.32 deleterious(0.01) probably_damaging(0.933) TCGA-NH-A5IV-01 1 9784086 9784086 C T PIK3CD Missense_Mutation p.A885V 0.32 deleterious(0) probably_damaging(0.97) TCGA-NH-A5IV-01 20 10620302 10620302 T G JAG1 Missense_Mutation p.K1167N 0.39 tolerated(0.08) probably_damaging(0.996) TCGA-NH-A5IV-01 20 1286757 1286757 C - SNPH 3'UTR 0.23 TCGA-NH-A5IV-01 20 1294155 1294155 G - SDCBP2 Intron 0.16 TCGA-NH-A5IV-01 20 17475218 17475218 G A BFSP1 Missense_Mutation p.A500V 0.40 tolerated(0.26) benign(0.001) TCGA-NH-A5IV-01 20 20123531 20123531 C T C20orf26 Missense_Mutation p.S297F 0.04 deleterious(0.03) benign(0.005) TCGA-NH-A5IV-01 20 23065597 23065597 A G CD93 Silent p.C411C 0.46 TCGA-NH-A5IV-01 20 23345832 23345832 C T GZF1 Missense_Mutation p.T271M 0.36 tolerated(0.23) benign(0.003) TCGA-NH-A5IV-01 20 25319886 25319886 G C ABHD12 Missense_Mutation p.A98G 0.38 tolerated(0.12) possibly_damaging(0.648) TCGA-NH-A5IV-01 20 3002864 3002864 C T PTPRA Silent p.C442C 0.42 TCGA-NH-A5IV-01 20 3016504 3016504 C T PTPRA Silent p.D705D 0.42 TCGA-NH-A5IV-01 20 30309660 30309660 T G BCL2L1 Missense_Mutation p.Q121P 0.15 deleterious(0) possibly_damaging(0.867) TCGA-NH-A5IV-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.45 TCGA-NH-A5IV-01 20 3147721 3147721 G A LZTS3 Missense_Mutation p.P30L 0.60 deleterious(0) benign(0.017) TCGA-NH-A5IV-01 20 31604896 31604896 G A BPIFB2 Missense_Mutation p.G189S 0.59 deleterious(0.01) probably_damaging(1) TCGA-NH-A5IV-01 20 31652574 31652574 C T BPIFB3 Missense_Mutation p.P283S 0.41 tolerated(1) probably_damaging(1) TCGA-NH-A5IV-01 20 32199107 32199107 G A CBFA2T2 Missense_Mutation p.G138E 0.34 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 20 33298155 33298155 C A TP53INP2 3'UTR 0.54 TCGA-NH-A5IV-01 20 33502206 33502206 C - ACSS2 Frame_Shift_Del p.P269Qfs*13 0.29 TCGA-NH-A5IV-01 20 34240428 34240428 A - RBM12 3'UTR 0.29 TCGA-NH-A5IV-01 20 34568531 34568531 A G CNBD2 Missense_Mutation p.M132V 0.44 tolerated(0.4) benign(0.006) TCGA-NH-A5IV-01 20 35128608 35128608 C T DLGAP4 Silent p.S699S 0.23 TCGA-NH-A5IV-01 20 35207143 35207143 G T TGIF2-C20orf24 Splice_Site 0.21 TCGA-NH-A5IV-01 20 35262901 35262901 G A SLA2 Silent p.I61I 0.41 TCGA-NH-A5IV-01 20 35467770 35467770 C T SOGA1 Silent p.L254L 0.43 TCGA-NH-A5IV-01 20 35506343 35506343 C T TLDC2 Silent p.N25N 0.33 TCGA-NH-A5IV-01 20 35506353 35506355 GAG - TLDC2 In_Frame_Del p.E32del 0.42 TCGA-NH-A5IV-01 20 35717406 35717406 A G RBL1 Silent p.R92R 0.41 TCGA-NH-A5IV-01 20 35717458 35717458 A T RBL1 Missense_Mutation p.V75D 0.45 deleterious(0) probably_damaging(0.971) TCGA-NH-A5IV-01 20 3653938 3653938 C T ADAM33 Intron 0.42 TCGA-NH-A5IV-01 20 36572487 36572487 C T VSTM2L Silent p.D149D 0.40 TCGA-NH-A5IV-01 20 36845701 36845701 C T KIAA1755 Missense_Mutation p.R952H 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A5IV-01 20 37182628 37182628 C T RALGAPB Missense_Mutation p.T1094M 0.40 tolerated(0.11) possibly_damaging(0.571) TCGA-NH-A5IV-01 20 37650518 37650518 C T DHX35 Silent p.I511I 0.40 TCGA-NH-A5IV-01 20 3765889 3765889 T C CENPB Silent p.E414E 0.22 TCGA-NH-A5IV-01 20 3782681 3782681 G A CDC25B Silent p.T344T 0.12 TCGA-NH-A5IV-01 20 3888913 3888913 G A PANK2 Silent p.Q323Q 0.15 TCGA-NH-A5IV-01 20 39317743 39317743 G - MAFB 5'UTR 0.23 TCGA-NH-A5IV-01 20 40033162 40033162 T C CHD6 3'UTR 0.41 TCGA-NH-A5IV-01 20 4162990 4162990 C T SMOX Silent p.H288H 0.05 TCGA-NH-A5IV-01 20 42225136 42225136 C T IFT52 Missense_Mutation p.P61S 0.40 deleterious(0.04) probably_damaging(0.941) TCGA-NH-A5IV-01 20 422303 422303 G A TBC1D20 Silent p.T185T 0.32 TCGA-NH-A5IV-01 20 43108836 43108836 G A TTPAL Missense_Mutation p.R66Q 0.52 tolerated(0.3) benign(0.436) TCGA-NH-A5IV-01 20 43247078 43247078 C A PKIG 3'UTR 0.10 TCGA-NH-A5IV-01 20 43587158 43587158 C T TOMM34 Intron 0.21 TCGA-NH-A5IV-01 20 43629140 43629140 C T STK4 Silent p.D313D 0.35 TCGA-NH-A5IV-01 20 44598228 44598228 C T ZNF335 Missense_Mutation p.G102S 0.31 tolerated(1) benign(0.01) TCGA-NH-A5IV-01 20 44640326 44640326 T C MMP9 Missense_Mutation p.W313R 0.28 deleterious(0) probably_damaging(0.985) TCGA-NH-A5IV-01 20 45194995 45194995 A G SLC13A3 Missense_Mutation p.L456P 0.20 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 20 45204270 45204270 A G SLC13A3 Missense_Mutation p.V425A 0.35 deleterious(0) possibly_damaging(0.755) TCGA-NH-A5IV-01 20 45867481 45867481 A G ZMYND8 Intron 0.43 TCGA-NH-A5IV-01 20 47342912 47342912 C T PREX1 Missense_Mutation p.G179E 0.19 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 20 47585766 47585766 T C ARFGEF2 Missense_Mutation p.L381P 0.40 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 20 47989455 47989455 A G KCNB1 3'UTR 0.32 TCGA-NH-A5IV-01 20 48098963 48098963 C T KCNB1 Missense_Mutation p.E19K 0.33 deleterious(0) benign(0.18) TCGA-NH-A5IV-01 20 48599546 48599548 TTC - SNAI1 5'UTR 0.52 TCGA-NH-A5IV-01 20 48808783 48808783 T - CEBPB 3'UTR 0.14 TCGA-NH-A5IV-01 20 49508280 49508280 T C ADNP Missense_Mutation p.M991V 0.08 tolerated_low_confidence(1) benign(0) TCGA-NH-A5IV-01 20 49509365 49509365 G A ADNP Missense_Mutation p.S629L 0.37 deleterious(0.01) possibly_damaging(0.761) TCGA-NH-A5IV-01 20 49620962 49620962 C T KCNG1 Missense_Mutation p.V386M 0.53 tolerated(0.35) probably_damaging(1) TCGA-NH-A5IV-01 20 49626084 49626084 C T KCNG1 Intron 0.48 TCGA-NH-A5IV-01 20 49626447 49626447 G A KCNG1 Silent p.C143C 0.36 TCGA-NH-A5IV-01 20 49626521 49626521 G A KCNG1 Missense_Mutation p.R119C 0.50 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 20 50139820 50139820 G - NFATC2 Frame_Shift_Del p.K321Rfs*70 0.29 TCGA-NH-A5IV-01 20 50273521 50273521 A G ATP9A Missense_Mutation p.Y488H 0.38 tolerated(0.36) benign(0) TCGA-NH-A5IV-01 20 5100237 5100237 C T PCNA Missense_Mutation p.V70M 0.48 tolerated(0.84) benign(0.013) TCGA-NH-A5IV-01 20 52185465 52185465 G A ZNF217 3'UTR 0.54 TCGA-NH-A5IV-01 20 57036477 57036477 C T APCDD1L Missense_Mutation p.R292H 0.41 deleterious(0.02) benign(0.035) TCGA-NH-A5IV-01 20 57290371 57290371 A G NPEPL1 Missense_Mutation p.R521G 0.42 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-NH-A5IV-01 20 57415289 57415289 G A RP4-806M20.3 5'Flank 0.56 TCGA-NH-A5IV-01 20 57429287 57429287 G A GNAS Missense_Mutation p.V323I 0.36 tolerated_low_confidence(0.15) unknown(0) TCGA-NH-A5IV-01 20 5753599 5753599 G A C20orf196 Missense_Mutation p.V30I 0.43 tolerated(0.5) benign(0.035) TCGA-NH-A5IV-01 20 60581743 60581743 C T TAF4 Silent p.P682P 0.37 TCGA-NH-A5IV-01 20 60699697 60699697 G A LSM14B Missense_Mutation p.R51H 0.44 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 20 60897479 60897479 G A LAMA5 Silent p.C2064C 0.45 TCGA-NH-A5IV-01 20 60965981 60965981 G A CABLES2 3'UTR 0.46 TCGA-NH-A5IV-01 20 61340827 61340827 C T NTSR1 Missense_Mutation p.R90W 0.24 deleterious(0) probably_damaging(0.983) TCGA-NH-A5IV-01 20 61341018 61341018 C T NTSR1 Silent p.Y153Y 0.44 TCGA-NH-A5IV-01 20 61431073 61431073 C - MRGBP 3'UTR 0.26 TCGA-NH-A5IV-01 20 61472219 61472219 C T COL9A3 3'UTR 0.39 TCGA-NH-A5IV-01 20 61511717 61511717 G A DIDO1 Missense_Mutation p.T1864M 0.37 benign(0.053) TCGA-NH-A5IV-01 20 61588797 61588797 G - SLC17A9 Frame_Shift_Del p.G89Vfs*25 0.26 TCGA-NH-A5IV-01 20 61637520 61637520 C A BHLHE23 Missense_Mutation p.G187C 0.27 deleterious(0) probably_damaging(0.976) TCGA-NH-A5IV-01 20 61834081 61834081 C A YTHDF1 Missense_Mutation p.R404L 0.10 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 20 61981129 61981129 G A CHRNA4 Missense_Mutation p.T545M 0.41 tolerated(0.11) benign(0.079) TCGA-NH-A5IV-01 20 62046439 62046439 G T KCNQ2 Silent p.R448R 0.14 TCGA-NH-A5IV-01 20 62195458 62195458 G A HELZ2 Missense_Mutation p.R1573W 0.33 tolerated(0.13) benign(0.01) TCGA-NH-A5IV-01 20 62196242 62196242 C A HELZ2 Silent p.S1311S 0.40 TCGA-NH-A5IV-01 20 62197119 62197119 G A HELZ2 Missense_Mutation p.T1019M 0.20 tolerated_low_confidence(0.13) benign(0.006) TCGA-NH-A5IV-01 20 62321154 62321154 C T RTEL1 Nonsense_Mutation p.Q717* 0.27 TCGA-NH-A5IV-01 20 62374265 62374265 G A SLC2A4RG Silent p.K362K 0.42 TCGA-NH-A5IV-01 20 62407068 62407068 C T ZBTB46 Silent p.L395L 0.45 TCGA-NH-A5IV-01 20 62737463 62737463 G A NPBWR2 Missense_Mutation p.A241V 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-NH-A5IV-01 20 62738026 62738026 G A NPBWR2 Silent p.S53S 0.43 TCGA-NH-A5IV-01 20 62904863 62904863 C - PCMTD2 Frame_Shift_Del p.P334Qfs*2 0.20 TCGA-NH-A5IV-01 20 858860 858860 G A ANGPT4 Silent p.H388H 0.39 TCGA-NH-A5IV-01 20 9364952 9364952 G A PLCB4 Missense_Mutation p.A320T 0.28 deleterious(0.01) possibly_damaging(0.487) TCGA-NH-A5IV-01 20 9546634 9546634 A G PAK7 Missense_Mutation p.V463A 0.40 deleterious(0) probably_damaging(0.993) TCGA-NH-A5IV-01 21 10934051 10934051 A G TPTE Missense_Mutation p.V309A 0.16 deleterious(0) probably_damaging(0.951) TCGA-NH-A5IV-01 21 15954762 15954762 G A SAMSN1 5'UTR 0.36 TCGA-NH-A5IV-01 21 16337488 16337488 G A NRIP1 Missense_Mutation p.P1009L 0.49 deleterious(0) possibly_damaging(0.522) TCGA-NH-A5IV-01 21 19647641 19647641 T C TMPRSS15 Missense_Mutation p.N926S 0.40 tolerated(0.17) benign(0.034) TCGA-NH-A5IV-01 21 28338262 28338262 C A ADAMTS5 Missense_Mutation p.G150V 0.07 deleterious(0.03) probably_damaging(0.986) TCGA-NH-A5IV-01 21 28338426 28338426 G A ADAMTS5 Silent p.G95G 0.11 TCGA-NH-A5IV-01 21 31587512 31587512 A G CLDN8 3'UTR 0.41 TCGA-NH-A5IV-01 21 31661780 31661780 A - KRTAP25-1 Frame_Shift_Del p.F10Sfs*27 0.27 TCGA-NH-A5IV-01 21 31709452 31709452 C T KRTAP27-1 Missense_Mutation p.V179I 0.39 tolerated(0.18) possibly_damaging(0.575) TCGA-NH-A5IV-01 21 31852635 31852635 A G KRTAP19-1 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) unknown(0) TCGA-NH-A5IV-01 21 32127605 32127605 C T KRTAP21-1 Missense_Mutation p.G31E 0.41 tolerated_low_confidence(0.06) unknown(0) TCGA-NH-A5IV-01 21 33057879 33057879 A G SCAF4 Splice_Site p.X737_splice 0.40 TCGA-NH-A5IV-01 21 33975497 33975497 T - AP000275.65 Frame_Shift_Del p.T214Pfs*40 0.11 TCGA-NH-A5IV-01 21 34399666 34399666 C T OLIG2 Silent p.L166L 0.44 TCGA-NH-A5IV-01 21 34443333 34443333 G T OLIG1 Missense_Mutation p.G261C 0.38 deleterious_low_confidence(0) possibly_damaging(0.455) TCGA-NH-A5IV-01 21 34861084 34861084 T G DNAJC28 Missense_Mutation p.D206A 0.41 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 21 35257819 35257819 G A ITSN1 Silent p.R1612R 0.29 TCGA-NH-A5IV-01 21 35468972 35468972 G A SLC5A3 Missense_Mutation p.R492H 0.43 tolerated(0.12) benign(0.072) TCGA-NH-A5IV-01 21 35472392 35472392 G A SLC5A3 3'UTR 0.12 TCGA-NH-A5IV-01 21 37444750 37444750 T C CBR1 Missense_Mutation p.V135A 0.41 deleterious(0) probably_damaging(0.941) TCGA-NH-A5IV-01 21 37581100 37581100 G A DOPEY2 Silent p.P193P 0.47 TCGA-NH-A5IV-01 21 37742041 37742041 A G MORC3 Missense_Mutation p.H792R 0.25 tolerated(0.14) benign(0.001) TCGA-NH-A5IV-01 21 38439575 38439575 G A PIGP Silent p.I111I 0.47 TCGA-NH-A5IV-01 21 40190380 40190380 G A ETS2 Missense_Mutation p.M207I 0.35 tolerated(0.48) benign(0) TCGA-NH-A5IV-01 21 40558775 40558775 C T BRWD1 3'UTR 0.13 TCGA-NH-A5IV-01 21 42540489 42540489 C - BACE2 Frame_Shift_Del p.P102Rfs*25 0.22 TCGA-NH-A5IV-01 21 43277362 43277362 C T PRDM15 Missense_Mutation p.V436I 0.47 deleterious_low_confidence(0) possibly_damaging(0.577) TCGA-NH-A5IV-01 21 43299461 43299461 G - PRDM15 Frame_Shift_Del p.P7Rfs*149 0.38 TCGA-NH-A5IV-01 21 43334731 43334731 G A C2CD2 Silent p.L274L 0.31 TCGA-NH-A5IV-01 21 43413721 43413721 T - ZBTB21 Frame_Shift_Del p.T162Lfs*9 0.11 TCGA-NH-A5IV-01 21 43954889 43954890 - C SLC37A1 Frame_Shift_Ins p.H76Pfs*5 0.32 TCGA-NH-A5IV-01 21 43959694 43959694 C A SLC37A1 Silent p.T141T 0.08 TCGA-NH-A5IV-01 21 44270257 44270257 G A WDR4 Nonsense_Mutation p.Q381* 0.56 TCGA-NH-A5IV-01 21 44836600 44836600 G A SIK1 3'UTR 0.34 TCGA-NH-A5IV-01 21 45110242 45110242 C T RRP1B Missense_Mutation p.T647I 0.44 deleterious(0.02) benign(0.426) TCGA-NH-A5IV-01 21 45175576 45175576 C T PDXK Intron 0.38 TCGA-NH-A5IV-01 21 45544491 45544491 C T PWP2 Silent p.D616D 0.45 TCGA-NH-A5IV-01 21 45648804 45648804 G A ICOSLG 3'UTR 0.57 TCGA-NH-A5IV-01 21 45819312 45819312 C T TRPM2 Silent p.H732H 0.43 TCGA-NH-A5IV-01 21 45843535 45843535 G A TRPM2 Missense_Mutation p.A1157T 0.28 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 21 46047395 46047395 G A KRTAP10-9 Missense_Mutation p.V103I 0.49 tolerated(0.11) unknown(0) TCGA-NH-A5IV-01 21 46057942 46057942 G A KRTAP10-10 Missense_Mutation p.C203Y 0.34 deleterious(0.02) benign(0.074) TCGA-NH-A5IV-01 21 46101966 46101966 A G KRTAP12-1 Missense_Mutation p.Y25H 0.05 deleterious(0.02) possibly_damaging(0.727) TCGA-NH-A5IV-01 21 46117877 46117877 C T KRTAP10-12 3'UTR 0.30 TCGA-NH-A5IV-01 21 46596479 46596479 C T ADARB1 Missense_Mutation p.A288V 0.40 deleterious(0.02) probably_damaging(0.988) TCGA-NH-A5IV-01 21 46644804 46644804 A G ADARB1 3'UTR 0.52 TCGA-NH-A5IV-01 21 46685311 46685311 C A POFUT2 3'UTR 0.40 TCGA-NH-A5IV-01 21 46698081 46698081 G A POFUT2 Silent p.S214S 0.42 TCGA-NH-A5IV-01 21 46841353 46841353 T C COL18A1-AS1 RNA 0.12 TCGA-NH-A5IV-01 21 46930111 46930111 T C COL18A1 Missense_Mutation p.L1390P 0.14 probably_damaging(0.959) TCGA-NH-A5IV-01 21 46951902 46951902 G A SLC19A1 Missense_Mutation p.A117V 0.09 tolerated(0.27) benign(0.01) TCGA-NH-A5IV-01 21 47361644 47361644 C T PCBP3 3'UTR 0.51 TCGA-NH-A5IV-01 21 47412080 47412080 C T COL6A1 Silent p.G395G 0.42 TCGA-NH-A5IV-01 21 47423822 47423822 C T COL6A1 Silent p.Y994Y 0.31 TCGA-NH-A5IV-01 21 47531914 47531914 A G COL6A2 Missense_Mutation p.H46R 0.41 tolerated(0.17) benign(0.002) TCGA-NH-A5IV-01 21 47627452 47627452 C T LSS Missense_Mutation p.V453I 0.54 tolerated(0.05) possibly_damaging(0.859) TCGA-NH-A5IV-01 21 47703712 47703712 G A MCM3AP Silent p.S420S 0.33 TCGA-NH-A5IV-01 21 47850093 47850093 C T PCNT Silent p.S2620S 0.48 TCGA-NH-A5IV-01 22 17690549 17690549 A G CECR1 Missense_Mutation p.S7P 0.33 tolerated_low_confidence(0.19) benign(0.003) TCGA-NH-A5IV-01 22 18028127 18028127 C T CECR2 Silent p.G1029G 0.08 TCGA-NH-A5IV-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.33 TCGA-NH-A5IV-01 22 18389330 18389330 C T MICAL3 Silent p.A83A 0.35 TCGA-NH-A5IV-01 22 18766972 18766972 C T GGT3P RNA 0.14 TCGA-NH-A5IV-01 22 18845946 18845946 A G BCRP7 Intron 0.28 TCGA-NH-A5IV-01 22 19196540 19196540 C T CLTCL1 Missense_Mutation p.A1112T 0.47 deleterious(0) probably_damaging(0.94) TCGA-NH-A5IV-01 22 19431886 19431886 G A C22orf39 Nonsense_Mutation p.R111* 0.38 TCGA-NH-A5IV-01 22 19776422 19776422 C T GNB1L Missense_Mutation p.R265H 0.38 tolerated(0.61) benign(0.004) TCGA-NH-A5IV-01 22 20102162 20102162 C - TRMT2A Frame_Shift_Del p.D390Tfs*9 0.29 TCGA-NH-A5IV-01 22 20130426 20130426 G A ZDHHC8 Missense_Mutation p.A425T 0.09 tolerated(0.48) benign(0.003) TCGA-NH-A5IV-01 22 20131163 20131163 C A ZDHHC8 Silent p.R670R 0.35 TCGA-NH-A5IV-01 22 20229267 20229267 C T RTN4R Silent p.A463A 0.34 TCGA-NH-A5IV-01 22 20760114 20760114 C T ZNF74 Missense_Mutation p.T264M 0.58 deleterious(0.01) possibly_damaging(0.749) TCGA-NH-A5IV-01 22 21157599 21157599 G A PI4KA Missense_Mutation p.R491C 0.36 tolerated(0.07) benign(0.045) TCGA-NH-A5IV-01 22 21834052 21834052 T - PI4KAP2 RNA 0.21 TCGA-NH-A5IV-01 22 21834078 21834078 G A PI4KAP2 RNA 0.35 TCGA-NH-A5IV-01 22 21989208 21989208 C A CCDC116 Missense_Mutation p.L286I 0.42 tolerated(0.1) benign(0.112) TCGA-NH-A5IV-01 22 21989329 21989329 G A CCDC116 Missense_Mutation p.G326D 0.50 tolerated(0.07) possibly_damaging(0.797) TCGA-NH-A5IV-01 22 22316924 22316924 G A TOP3B Missense_Mutation p.P468S 0.24 deleterious(0.01) possibly_damaging(0.853) TCGA-NH-A5IV-01 22 22319678 22319678 G A TOP3B Missense_Mutation p.R308C 0.29 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 22 22985396 22985396 C T GGTLC2 5'Flank 0.44 TCGA-NH-A5IV-01 22 22989254 22989254 C T GGTLC2 Silent p.S69S 0.35 TCGA-NH-A5IV-01 22 23263607 23263607 G A IGLJ7 Silent p.%3D 0.42 TCGA-NH-A5IV-01 22 23656202 23656202 C T BCR Silent p.L1169L 0.38 TCGA-NH-A5IV-01 22 23741987 23741987 C T ZDHHC8P1 RNA 0.30 TCGA-NH-A5IV-01 22 23742200 23742200 C T ZDHHC8P1 RNA 0.54 TCGA-NH-A5IV-01 22 24059338 24059338 C T KB-1572G7.2 RNA 0.42 TCGA-NH-A5IV-01 22 24217369 24217369 G A AP000350.10 Missense_Mutation p.R81H 0.33 tolerated(0.08) benign(0.076) TCGA-NH-A5IV-01 22 24236582 24236582 G A MIF 5'UTR 0.30 TCGA-NH-A5IV-01 22 24698173 24698173 A T SPECC1L 5'UTR 0.45 TCGA-NH-A5IV-01 22 24717887 24717887 A C SPECC1L Silent p.S313S 0.31 TCGA-NH-A5IV-01 22 24906722 24906722 C T UPB1 Missense_Mutation p.P124S 0.35 deleterious(0.02) probably_damaging(0.946) TCGA-NH-A5IV-01 22 24951613 24951613 G A GUCD1 5'Flank 0.40 TCGA-NH-A5IV-01 22 26086249 26086249 G A ADRBK2 Missense_Mutation p.V351I 0.34 deleterious(0) benign(0.378) TCGA-NH-A5IV-01 22 26243613 26243613 A G MYO18B Missense_Mutation p.R1257G 0.19 deleterious(0) probably_damaging(0.972) TCGA-NH-A5IV-01 22 26838490 26838490 C T ASPHD2 Missense_Mutation p.R318C 0.42 deleterious(0.03) probably_damaging(0.916) TCGA-NH-A5IV-01 22 26951216 26951216 G A TPST2 Intron 0.45 TCGA-NH-A5IV-01 22 29696345 29696346 TC - EWSR1 3'Flank 0.12 TCGA-NH-A5IV-01 22 30886219 30886219 C T SEC14L4 Missense_Mutation p.D366N 0.42 deleterious(0.02) possibly_damaging(0.749) TCGA-NH-A5IV-01 22 30951149 30951149 C T GAL3ST1 Missense_Mutation p.A355T 0.41 tolerated(0.35) benign(0.005) TCGA-NH-A5IV-01 22 31322651 31322651 T C MORC2 3'UTR 0.30 TCGA-NH-A5IV-01 22 31354670 31354670 C T MORC2 5'UTR 0.39 TCGA-NH-A5IV-01 22 31501069 31501069 C G SELM Missense_Mutation p.V109L 0.30 tolerated(1) benign(0.012) TCGA-NH-A5IV-01 22 31679184 31679184 G - PIK3IP1 Frame_Shift_Del p.T227Pfs*69 0.24 TCGA-NH-A5IV-01 22 32011094 32011094 G A SFI1 Silent p.T1043T 0.30 TCGA-NH-A5IV-01 22 32100668 32100668 G A PRR14L Missense_Mutation p.T1934I 0.33 tolerated(0.13) benign(0.11) TCGA-NH-A5IV-01 22 32242830 32242830 C T DEPDC5 Missense_Mutation p.A1002V 0.25 tolerated(0.29) benign(0.001) TCGA-NH-A5IV-01 22 35661330 35661330 A G HMGXB4 Missense_Mutation p.K317E 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-NH-A5IV-01 22 36055654 36055654 G T APOL6 3'UTR 0.48 TCGA-NH-A5IV-01 22 36892095 36892095 G A FOXRED2 Missense_Mutation p.R515W 0.42 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 22 36960240 36960240 G T CACNG2 3'UTR 0.50 TCGA-NH-A5IV-01 22 37171857 37171857 G A IFT27 5'UTR 0.36 TCGA-NH-A5IV-01 22 37414268 37414268 A C TST Missense_Mutation p.L169R 0.30 tolerated(0.49) benign(0.095) TCGA-NH-A5IV-01 22 37603560 37603560 G A SSTR3 Silent p.L95L 0.40 TCGA-NH-A5IV-01 22 37771529 37771529 G A ELFN2 Missense_Mutation p.R16W 0.37 tolerated(0.22) possibly_damaging(0.876) TCGA-NH-A5IV-01 22 37872987 37872987 A G MFNG Silent p.G198G 0.14 TCGA-NH-A5IV-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.16 TCGA-NH-A5IV-01 22 38137002 38137002 C T TRIOBP Missense_Mutation p.P1762L 0.44 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-NH-A5IV-01 22 38536154 38536154 G A PLA2G6 Missense_Mutation p.A211V 0.42 tolerated(0.33) benign(0.005) TCGA-NH-A5IV-01 22 38612377 38612377 G A MAFF 3'UTR 0.09 TCGA-NH-A5IV-01 22 38694928 38694928 T - CSNK1E Frame_Shift_Del p.T250Hfs*44 0.21 TCGA-NH-A5IV-01 22 39417480 39417481 - A APOBEC3D 5'UTR 0.38 TCGA-NH-A5IV-01 22 39441078 39441078 A G APOBEC3F Missense_Mutation p.K102E 0.37 tolerated(0.68) possibly_damaging(0.675) TCGA-NH-A5IV-01 22 39913384 39913384 T C MIEF1 3'UTR 0.29 TCGA-NH-A5IV-01 22 39918161 39918161 A G ATF4 Missense_Mutation p.I204V 0.16 tolerated(0.95) benign(0.001) TCGA-NH-A5IV-01 22 40037069 40037069 G A CACNA1I Missense_Mutation p.S313N 0.26 tolerated(0.36) benign(0.225) TCGA-NH-A5IV-01 22 40069085 40069085 G A CACNA1I Missense_Mutation p.R1594Q 0.41 deleterious(0) possibly_damaging(0.553) TCGA-NH-A5IV-01 22 40706833 40706833 C T TNRC6B Missense_Mutation p.A1424V 0.43 tolerated(0.07) benign(0.24) TCGA-NH-A5IV-01 22 40757152 40757152 C T ADSL Intron 0.36 TCGA-NH-A5IV-01 22 41548328 41548328 C T EP300 Missense_Mutation p.P1039L 0.36 benign(0.081) TCGA-NH-A5IV-01 22 41574859 41574859 A G EP300 Missense_Mutation p.M2382V 0.08 benign(0.124) TCGA-NH-A5IV-01 22 41621076 41621076 G A L3MBTL2 Splice_Site p.X452_splice 0.09 TCGA-NH-A5IV-01 22 41726024 41726024 C T ZC3H7B Intron 0.30 TCGA-NH-A5IV-01 22 42091976 42091976 C T C22orf46 3'UTR 0.19 TCGA-NH-A5IV-01 22 42229248 42229248 G - SREBF2 5'UTR 0.09 TCGA-NH-A5IV-01 22 42280888 42280888 C T SREBF2 Missense_Mutation p.A694V 0.16 deleterious(0) probably_damaging(0.942) TCGA-NH-A5IV-01 22 42981973 42981973 G A POLDIP3 Missense_Mutation p.R364W 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-NH-A5IV-01 22 43213174 43213174 G A ARFGAP3 Silent p.D346D 0.37 TCGA-NH-A5IV-01 22 43275125 43275127 CTT - PACSIN2 In_Frame_Del p.K319del 0.45 TCGA-NH-A5IV-01 22 43464492 43464492 C T TTLL1 Missense_Mutation p.A143T 0.35 deleterious(0) possibly_damaging(0.861) TCGA-NH-A5IV-01 22 43559216 43559216 T G TSPO 3'UTR 0.40 TCGA-NH-A5IV-01 22 43570385 43570385 G A TTLL12 Silent p.G353G 0.56 TCGA-NH-A5IV-01 22 43614457 43614457 G A SCUBE1 Silent p.C565C 0.23 TCGA-NH-A5IV-01 22 44067948 44067948 T C EFCAB6 Silent p.S515S 0.37 TCGA-NH-A5IV-01 22 44681402 44681402 G A KIAA1644 Missense_Mutation p.P169S 0.41 tolerated_low_confidence(0.3) benign(0.081) TCGA-NH-A5IV-01 22 45571941 45571941 C T NUP50 Missense_Mutation p.A107V 0.40 tolerated(0.11) benign(0.005) TCGA-NH-A5IV-01 22 45683173 45683173 G A UPK3A Missense_Mutation p.C110Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 22 46654025 46654025 C T PKDREJ Missense_Mutation p.R1732H 0.40 tolerated(0.26) benign(0.004) TCGA-NH-A5IV-01 22 46657327 46657328 - G PKDREJ Frame_Shift_Ins p.S632Ffs*10 0.27 TCGA-NH-A5IV-01 22 46658655 46658655 C T PKDREJ Missense_Mutation p.A189T 0.39 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 22 46725290 46725290 G A GTSE1 Silent p.A654A 0.40 TCGA-NH-A5IV-01 22 46731414 46731414 A - TRMU 5'UTR 0.50 TCGA-NH-A5IV-01 22 46930344 46930344 C T CELSR1 Silent p.S908S 0.31 TCGA-NH-A5IV-01 22 50171381 50171381 G A BRD1 Missense_Mutation p.R849C 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A5IV-01 22 50277679 50277679 T - ZBED4 Frame_Shift_Del p.F125Lfs*16 0.30 TCGA-NH-A5IV-01 22 50591566 50591566 G A MOV10L1 Silent p.A995A 0.43 TCGA-NH-A5IV-01 22 50615660 50615660 G A PANX2 Silent p.A173A 0.52 TCGA-NH-A5IV-01 22 50876291 50876291 G A PPP6R2 Missense_Mutation p.A575T 0.22 deleterious(0.04) possibly_damaging(0.49) TCGA-NH-A5IV-01 22 51015434 51015434 C T CPT1B Missense_Mutation p.R104Q 0.50 tolerated(0.74) benign(0.001) TCGA-NH-A5IV-01 22 51017543 51017543 G A CHKB 3'UTR 0.31 TCGA-NH-A5IV-01 22 51065641 51065641 G - ARSA Frame_Shift_Del p.H140Ifs*8 0.26 TCGA-NH-A5IV-01 2 100038061 100038061 G C REV1 Silent p.T577T 0.34 TCGA-NH-A5IV-01 2 10008537 10008537 G A TAF1B Missense_Mutation p.V178I 0.36 tolerated(0.93) benign(0) TCGA-NH-A5IV-01 2 101638916 101638916 C A TBC1D8 Missense_Mutation p.R848L 0.33 tolerated(1) possibly_damaging(0.669) TCGA-NH-A5IV-01 2 102636270 102636270 C A IL1R2 Silent p.I228I 0.37 TCGA-NH-A5IV-01 2 102818106 102818106 G A IL1RL2 Missense_Mutation p.A194T 0.38 tolerated(1) benign(0.005) TCGA-NH-A5IV-01 2 103068232 103068232 C T IL18RAP Missense_Mutation p.A464V 0.35 deleterious(0.01) possibly_damaging(0.513) TCGA-NH-A5IV-01 2 105954066 105954066 C T C2orf49 Missense_Mutation p.R8C 0.06 tolerated(0.1) probably_damaging(0.999) TCGA-NH-A5IV-01 2 108473259 108473259 A T RGPD4 Missense_Mutation p.L370F 0.12 tolerated(0.16) benign(0.094) TCGA-NH-A5IV-01 2 109124028 109124028 A G GCC2 Missense_Mutation p.N1666S 0.36 tolerated(1) benign(0.005) TCGA-NH-A5IV-01 2 10915162 10915162 A G ATP6V1C2 Missense_Mutation p.M264V 0.07 tolerated(0.11) benign(0.005) TCGA-NH-A5IV-01 2 110374256 110374256 T - SOWAHC 3'UTR 0.11 TCGA-NH-A5IV-01 2 110849315 110849315 G A MALL Silent p.A46A 0.16 TCGA-NH-A5IV-01 2 11351886 11351886 A G ROCK2 Silent p.H708H 0.13 TCGA-NH-A5IV-01 2 113940666 113940666 A G PSD4 Silent p.S211S 0.31 TCGA-NH-A5IV-01 2 114476837 114476837 A - SLC35F5 Frame_Shift_Del p.S464Hfs*5 0.25 TCGA-NH-A5IV-01 2 118866049 118866049 C T INSIG2 3'UTR 0.12 TCGA-NH-A5IV-01 2 11944578 11944578 C T LPIN1 Silent p.N730N 0.31 TCGA-NH-A5IV-01 2 119600456 119600456 G A EN1 3'UTR 0.27 TCGA-NH-A5IV-01 2 120021081 120021082 AC - STEAP3 3'UTR 0.57 TCGA-NH-A5IV-01 2 122204966 122204966 G A CLASP1 Missense_Mutation p.T620M 0.49 tolerated(0.1) benign(0.11) TCGA-NH-A5IV-01 2 128339570 128339570 G A MYO7B Silent p.R395R 0.15 TCGA-NH-A5IV-01 2 128398481 128398481 T C LIMS2 Missense_Mutation p.H272R 0.35 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 2 128477395 128477395 G A WDR33 Missense_Mutation p.P735L 0.42 deleterious_low_confidence(0.05) unknown(0) TCGA-NH-A5IV-01 2 129026114 129026114 C A HS6ST1 Silent p.R286R 0.11 TCGA-NH-A5IV-01 2 131801113 131801113 G A ARHGEF4 Missense_Mutation p.R519Q 0.04 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 2 131803131 131803131 C - ARHGEF4 Intron 0.23 TCGA-NH-A5IV-01 2 131812894 131812894 G A FAM168B Silent p.N142N 0.36 TCGA-NH-A5IV-01 2 132558514 132558515 - C C2orf27B 5'UTR 0.28 TCGA-NH-A5IV-01 2 133541566 133541566 G A NCKAP5 Silent p.L940L 0.13 TCGA-NH-A5IV-01 2 133541576 133541576 G A NCKAP5 Silent p.S936S 0.41 TCGA-NH-A5IV-01 2 135107445 135107445 G A MGAT5 Silent p.S394S 0.10 TCGA-NH-A5IV-01 2 135214271 135214271 C T TMEM163 3'UTR 0.28 TCGA-NH-A5IV-01 2 138376051 138376051 C T THSD7B Missense_Mutation p.P1222S 0.23 tolerated(0.99) unknown(0) TCGA-NH-A5IV-01 2 138771747 138771747 G A HNMT 3'UTR 0.11 TCGA-NH-A5IV-01 2 141272230 141272230 C T LRP1B Missense_Mutation p.S2754N 0.40 possibly_damaging(0.517) TCGA-NH-A5IV-01 2 141291622 141291622 C T LRP1B Missense_Mutation p.C2577Y 0.13 possibly_damaging(0.712) TCGA-NH-A5IV-01 2 141777545 141777545 A C LRP1B Missense_Mutation p.L639R 0.09 probably_damaging(0.928) TCGA-NH-A5IV-01 2 143642982 143642982 A G KYNU Missense_Mutation p.I16V 0.35 tolerated(0.61) benign(0.001) TCGA-NH-A5IV-01 2 148657036 148657036 T C ACVR2A Silent p.C91C 0.11 TCGA-NH-A5IV-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.47 TCGA-NH-A5IV-01 2 149240783 149240783 G T MBD5 Missense_Mutation p.A875S 0.38 tolerated(0.17) possibly_damaging(0.567) TCGA-NH-A5IV-01 2 152354649 152354649 T C NEB Intron 0.37 TCGA-NH-A5IV-01 2 152466336 152466336 T G NEB Missense_Mutation p.D4106A 0.31 possibly_damaging(0.47) TCGA-NH-A5IV-01 2 152727359 152727359 T - CACNB4 Frame_Shift_Del p.V206* 0.28 TCGA-NH-A5IV-01 2 15567852 15567852 G A NBAS Silent p.C802C 0.47 TCGA-NH-A5IV-01 2 158637067 158637068 - CA ACVR1 Frame_Shift_Ins p.E38Vfs*21 0.39 TCGA-NH-A5IV-01 2 160035357 160035358 - TC TANC1 Frame_Shift_Ins p.E735Lfs*10 0.12 TCGA-NH-A5IV-01 2 160284849 160284849 T C BAZ2B Silent p.K779K 0.42 TCGA-NH-A5IV-01 2 160585639 160585639 A G MARCH7 Missense_Mutation p.T36A 0.05 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 2 162274561 162274561 A - TBR1 Intron 0.19 TCGA-NH-A5IV-01 2 163044763 163044763 G A FAP Missense_Mutation p.T577I 0.48 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 2 163137989 163137991 ATG - IFIH1 In_Frame_Del p.I457del 0.44 TCGA-NH-A5IV-01 2 164467848 164467848 C T FIGN Missense_Mutation p.S165N 0.44 tolerated(0.28) benign(0.011) TCGA-NH-A5IV-01 2 166166887 166166887 T C SCN2A Missense_Mutation p.V251A 0.44 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 2 166514384 166514384 G - CSRNP3 Frame_Shift_Del p.G89Efs*33 0.30 TCGA-NH-A5IV-01 2 166605340 166605340 C T GALNT3 Missense_Mutation p.C618Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 2 166626953 166626953 G A GALNT3 Silent p.V86V 0.34 TCGA-NH-A5IV-01 2 167168247 167168247 G - SCN9A Frame_Shift_Del p.P7Qfs*83 0.30 TCGA-NH-A5IV-01 2 167262275 167262275 G A SCN7A Nonsense_Mutation p.R1622* 0.46 TCGA-NH-A5IV-01 2 167262716 167262716 A - SCN7A Frame_Shift_Del p.Y1475Ifs*11 0.28 TCGA-NH-A5IV-01 2 168811964 168811964 C T STK39 3'UTR 0.42 TCGA-NH-A5IV-01 2 169995849 169995849 T C LRP2 Missense_Mutation p.I4434V 0.09 benign(0.016) TCGA-NH-A5IV-01 2 170366323 170366323 G A KLHL41 Missense_Mutation p.R12Q 0.52 deleterious(0.02) possibly_damaging(0.621) TCGA-NH-A5IV-01 2 170366370 170366370 G A KLHL41 Missense_Mutation p.D28N 0.40 tolerated(0.51) benign(0.054) TCGA-NH-A5IV-01 2 170507023 170507023 T A CCDC173 Missense_Mutation p.E323V 0.35 deleterious(0) probably_damaging(0.943) TCGA-NH-A5IV-01 2 171240299 171240299 G A MYO3B Missense_Mutation p.C422Y 0.35 deleterious(0.02) benign(0.288) TCGA-NH-A5IV-01 2 172691294 172691294 C T SLC25A12 Missense_Mutation p.V232I 0.11 tolerated(0.84) benign(0.005) TCGA-NH-A5IV-01 2 173426949 173426949 T C PDK1 Missense_Mutation p.Y114H 0.05 deleterious(0) probably_damaging(0.985) TCGA-NH-A5IV-01 2 175346547 175346548 - A GPR155 Frame_Shift_Ins p.L46Ffs*49 0.28 TCGA-NH-A5IV-01 2 175450272 175450272 C T WIPF1 Silent p.P10P 0.35 TCGA-NH-A5IV-01 2 176965259 176965259 G - HOXD12 Frame_Shift_Del p.A197Rfs*43 0.19 TCGA-NH-A5IV-01 2 176965490 176965490 C T HOXD12 3'UTR 0.38 TCGA-NH-A5IV-01 2 176982113 176982113 C T HOXD10 Silent p.G184G 0.37 TCGA-NH-A5IV-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.30 TCGA-NH-A5IV-01 2 176995417 176995417 C - HOXD8 Frame_Shift_Del p.P110Lfs*67 0.30 TCGA-NH-A5IV-01 2 178416054 178416054 C A TTC30B Missense_Mutation p.G480C 0.30 deleterious(0.01) possibly_damaging(0.88) TCGA-NH-A5IV-01 2 179201145 179201145 G A OSBPL6 Missense_Mutation p.D259N 0.46 deleterious(0.02) probably_damaging(0.997) TCGA-NH-A5IV-01 2 179396043 179396043 G A TTN Missense_Mutation p.A35100V 0.37 TCGA-NH-A5IV-01 2 179408387 179408387 T C TTN Missense_Mutation p.T32105A 0.20 TCGA-NH-A5IV-01 2 179430930 179430930 T C TTN Silent p.V26643V 0.41 TCGA-NH-A5IV-01 2 179444432 179444432 G A TTN Nonsense_Mutation p.Q22498* 0.38 TCGA-NH-A5IV-01 2 179446305 179446305 G A TTN Silent p.F22230F 0.41 TCGA-NH-A5IV-01 2 179446376 179446376 T C TTN Missense_Mutation p.N22207D 0.36 TCGA-NH-A5IV-01 2 179498714 179498714 T C TTN Missense_Mutation p.H14171R 0.39 TCGA-NH-A5IV-01 2 179532037 179532037 G A TTN Missense_Mutation p.T11908I 0.35 TCGA-NH-A5IV-01 2 179582534 179582534 C T TTN Missense_Mutation p.R8356H 0.38 TCGA-NH-A5IV-01 2 179595066 179595066 G A TTN Nonsense_Mutation p.Q6021* 0.34 TCGA-NH-A5IV-01 2 179639089 179639089 T C TTN Missense_Mutation p.H2301R 0.38 TCGA-NH-A5IV-01 2 179730560 179730560 A G CCDC141 Silent p.A886A 0.08 TCGA-NH-A5IV-01 2 179730567 179730567 G T CCDC141 Missense_Mutation p.A884D 0.08 tolerated(0.16) possibly_damaging(0.586) TCGA-NH-A5IV-01 2 185803974 185803974 T C ZNF804A 3'UTR 0.48 TCGA-NH-A5IV-01 2 186672485 186672485 A - FSIP2 Frame_Shift_Del p.K6241Rfs*27 0.29 TCGA-NH-A5IV-01 2 190532189 190532189 G A ASNSD1 Missense_Mutation p.R444Q 0.14 tolerated(0.26) benign(0.06) TCGA-NH-A5IV-01 2 1947044 1947044 G A MYT1L Missense_Mutation p.A72V 0.25 tolerated(0.47) unknown(0) TCGA-NH-A5IV-01 2 197629315 197629315 G A GTF3C3 Missense_Mutation p.T878M 0.37 tolerated(0.22) benign(0) TCGA-NH-A5IV-01 2 198265112 198265112 C T SF3B1 Missense_Mutation p.G922D 0.36 tolerated(0.08) benign(0.244) TCGA-NH-A5IV-01 2 198267739 198267739 C T SF3B1 Silent p.P580P 0.32 TCGA-NH-A5IV-01 2 198540230 198540230 G A RFTN2 5'UTR 0.42 TCGA-NH-A5IV-01 2 202272159 202272160 GA - TRAK2 Frame_Shift_Del p.P85Sfs*4 0.34 TCGA-NH-A5IV-01 2 202352434 202352434 A G ALS2CR11 Silent p.S1788S 0.07 TCGA-NH-A5IV-01 2 202899955 202899955 G - FZD7 Frame_Shift_Del p.A197Pfs*46 0.18 TCGA-NH-A5IV-01 2 202901451 202901451 C T FZD7 3'UTR 0.14 TCGA-NH-A5IV-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.27 TCGA-NH-A5IV-01 2 204161611 204161611 A G CYP20A1 Missense_Mutation p.T457A 0.45 deleterious(0.03) probably_damaging(0.965) TCGA-NH-A5IV-01 2 20451242 20451242 A - PUM2 3'UTR 0.46 TCGA-NH-A5IV-01 2 204820579 204820579 T - ICOS Frame_Shift_Del p.L96Yfs*26 0.26 TCGA-NH-A5IV-01 2 204824408 204824408 G A ICOS 3'UTR 0.38 TCGA-NH-A5IV-01 2 206628421 206628421 C T NRP2 Nonsense_Mutation p.Q690* 0.38 TCGA-NH-A5IV-01 2 206874496 206874496 T A INO80D Missense_Mutation p.N522I 0.07 tolerated(0.13) benign(0.007) TCGA-NH-A5IV-01 2 209169656 209169656 G A PIKFYVE Missense_Mutation p.V519M 0.15 tolerated(0.45) benign(0.029) TCGA-NH-A5IV-01 2 211525367 211525367 T C CPS1 Silent p.Y1311Y 0.38 TCGA-NH-A5IV-01 2 21241934 21241934 G A APOB Silent p.S1017S 0.45 TCGA-NH-A5IV-01 2 214149415 214149415 C A SPAG16 Intron 0.31 TCGA-NH-A5IV-01 2 218683102 218683102 T C TNS1 Missense_Mutation p.H1214R 0.21 tolerated(0.69) benign(0.003) TCGA-NH-A5IV-01 2 218713468 218713468 C T TNS1 Missense_Mutation p.R466H 0.21 tolerated(0.55) benign(0.003) TCGA-NH-A5IV-01 2 219029149 219029149 C T CXCR1 Silent p.L262L 0.42 TCGA-NH-A5IV-01 2 219127452 219127452 C T GPBAR1 Missense_Mutation p.T2M 0.44 deleterious_low_confidence(0) benign(0.005) TCGA-NH-A5IV-01 2 219144770 219144770 C T TMBIM1 Silent p.V94V 0.26 TCGA-NH-A5IV-01 2 219529504 219529504 G A RNF25 Silent p.D253D 0.43 TCGA-NH-A5IV-01 2 219558457 219558457 C A STK36 Silent p.S720S 0.33 TCGA-NH-A5IV-01 2 219559307 219559307 G A STK36 Silent p.Q820Q 0.14 TCGA-NH-A5IV-01 2 219563351 219563351 G A STK36 Missense_Mutation p.M1028I 0.40 tolerated(0.1) benign(0) TCGA-NH-A5IV-01 2 219602959 219602959 C T TTLL4 Missense_Mutation p.A187V 0.40 tolerated(0.19) benign(0.056) TCGA-NH-A5IV-01 2 219754750 219754750 G A WNT10A Missense_Mutation p.V141M 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A5IV-01 2 219886505 219886505 G - CCDC108 Frame_Shift_Del p.L1043Sfs*22 0.22 TCGA-NH-A5IV-01 2 219892637 219892637 G - CCDC108 Frame_Shift_Del p.P649Rfs*5 0.27 TCGA-NH-A5IV-01 2 220089425 220089425 A G ATG9A Missense_Mutation p.V223A 0.08 deleterious(0) probably_damaging(0.969) TCGA-NH-A5IV-01 2 220092740 220092740 G A ATG9A Nonsense_Mutation p.Q3* 0.15 TCGA-NH-A5IV-01 2 220113157 220113157 T C STK16 Missense_Mutation p.L265S 0.10 deleterious(0) possibly_damaging(0.612) TCGA-NH-A5IV-01 2 220309639 220309639 G A SPEG Missense_Mutation p.G191R 0.38 probably_damaging(0.982) TCGA-NH-A5IV-01 2 220337658 220337658 G A SPEG Silent p.S1329S 0.40 TCGA-NH-A5IV-01 2 223494887 223494887 T - FARSB Frame_Shift_Del p.I265* 0.25 TCGA-NH-A5IV-01 2 226446763 226446763 G A NYAP2 Silent p.T210T 0.48 TCGA-NH-A5IV-01 2 227872827 227872827 C T COL4A4 Silent p.P1572P 0.44 TCGA-NH-A5IV-01 2 228115886 228115886 C G COL4A3 Missense_Mutation p.P193A 0.37 possibly_damaging(0.846) TCGA-NH-A5IV-01 2 228883981 228883981 G - SPHKAP Frame_Shift_Del p.P530Qfs*32 0.27 TCGA-NH-A5IV-01 2 230312215 230312215 C T DNER Missense_Mutation p.A435T 0.40 tolerated(0.21) benign(0.228) TCGA-NH-A5IV-01 2 230411675 230411675 C T DNER Silent p.T327T 0.46 TCGA-NH-A5IV-01 2 231072754 231072754 T C SP110 Missense_Mutation p.I284V 0.08 tolerated(0.2) benign(0.003) TCGA-NH-A5IV-01 2 232673018 232673019 AG - COPS7B 3'UTR 0.29 TCGA-NH-A5IV-01 2 233194613 233194613 C - DIS3L2 Frame_Shift_Del p.P612Rfs*33 0.26 TCGA-NH-A5IV-01 2 233660932 233660932 G A GIGYF2 Splice_Site p.X568_splice 0.41 TCGA-NH-A5IV-01 2 233735017 233735017 C T C2orf82 5'UTR 0.39 TCGA-NH-A5IV-01 2 233759486 233759486 G A NGEF Silent p.D323D 0.34 TCGA-NH-A5IV-01 2 233899428 233899428 G A NEU2 Silent p.P268P 0.41 TCGA-NH-A5IV-01 2 234102462 234102462 G T INPP5D Missense_Mutation p.E805D 0.41 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 2 234102555 234102555 G - INPP5D Frame_Shift_Del p.E838Rfs*19 0.27 TCGA-NH-A5IV-01 2 234526996 234526996 G A UGT1A8 Missense_Mutation p.E215K 0.38 tolerated(0.57) benign(0.013) TCGA-NH-A5IV-01 2 234590873 234590873 G A UGT1A7 Missense_Mutation p.R97H 0.53 tolerated(0.24) benign(0) TCGA-NH-A5IV-01 2 234591248 234591249 - T UGT1A7 Frame_Shift_Ins p.K225Qfs*9 0.18 TCGA-NH-A5IV-01 2 234926054 234926054 C A TRPM8 3'UTR 0.33 TCGA-NH-A5IV-01 2 236839468 236839468 A G AGAP1 Missense_Mutation p.N462D 0.42 tolerated(0.79) benign(0.078) TCGA-NH-A5IV-01 2 237233317 237233317 T - IQCA1 3'UTR 0.32 TCGA-NH-A5IV-01 2 238283535 238283535 C T COL6A3 Missense_Mutation p.V1067M 0.42 probably_damaging(0.998) TCGA-NH-A5IV-01 2 238671822 238671822 C T LRRFIP1 Missense_Mutation p.A489V 0.39 tolerated(1) benign(0) TCGA-NH-A5IV-01 2 239003155 239003155 G A SCLY Missense_Mutation p.R375Q 0.07 tolerated(0.85) benign(0) TCGA-NH-A5IV-01 2 239037446 239037446 G A ESPNL Silent p.T438T 0.41 TCGA-NH-A5IV-01 2 239141193 239141193 T C AC016757.3 5'Flank 0.13 TCGA-NH-A5IV-01 2 239161864 239161864 G T PER2 Missense_Mutation p.H934N 0.39 tolerated(0.46) benign(0.285) TCGA-NH-A5IV-01 2 239161983 239161983 G - PER2 Frame_Shift_Del p.P894Hfs*125 0.27 TCGA-NH-A5IV-01 2 241075736 241075736 C T MYEOV2 Missense_Mutation p.R10K 0.38 tolerated_low_confidence(0.09) benign(0.14) TCGA-NH-A5IV-01 2 241402763 241402763 G T GPC1 Splice_Site p.X240_splice 0.45 TCGA-NH-A5IV-01 2 241696766 241696766 T C KIF1A Missense_Mutation p.D943G 0.11 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 2 242066294 242066295 - G PASK Frame_Shift_Ins p.H679Pfs*57 0.26 TCGA-NH-A5IV-01 2 242179447 242179447 G A HDLBP Missense_Mutation p.R754C 0.40 tolerated(0.08) possibly_damaging(0.791) TCGA-NH-A5IV-01 2 242187751 242187751 T C HDLBP Missense_Mutation p.T509A 0.49 deleterious(0.03) possibly_damaging(0.837) TCGA-NH-A5IV-01 2 242373703 242373705 TCT - FARP2 In_Frame_Del p.F335del 0.40 TCGA-NH-A5IV-01 2 242404951 242404952 - G FARP2 Intron 0.24 TCGA-NH-A5IV-01 2 242741252 242741252 C T GAL3ST2 Missense_Mutation p.T59M 0.10 deleterious(0.04) probably_damaging(0.928) TCGA-NH-A5IV-01 2 24303725 24303726 - T TP53I3 Frame_Shift_Ins p.E195Rfs*5 0.28 TCGA-NH-A5IV-01 2 24392365 24392366 AA - FAM228B 3'UTR 0.52 TCGA-NH-A5IV-01 2 25141736 25141736 G A ADCY3 Missense_Mutation p.R41W 0.28 tolerated(0.07) possibly_damaging(0.858) TCGA-NH-A5IV-01 2 253073 253073 T - SH3YL1 Frame_Shift_Del p.K15Rfs*6 0.14 TCGA-NH-A5IV-01 2 25471008 25471008 A G DNMT3A Silent p.T251T 0.41 TCGA-NH-A5IV-01 2 26698896 26698896 C T OTOF Silent p.A959A 0.40 TCGA-NH-A5IV-01 2 26950559 26950559 C T KCNK3 Missense_Mutation p.T103M 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 2 27165510 27165510 C T DPYSL5 Silent p.R444R 0.17 TCGA-NH-A5IV-01 2 27306011 27306011 G - EMILIN1 Frame_Shift_Del p.E526Rfs*35 0.29 TCGA-NH-A5IV-01 2 27315234 27315234 G A KHK Missense_Mutation p.A43T 0.45 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 2 27352448 27352448 C T ABHD1 Missense_Mutation p.R191C 0.08 tolerated(0.21) benign(0.007) TCGA-NH-A5IV-01 2 27456981 27456982 - C CAD Frame_Shift_Ins p.Q1172Tfs*37 0.35 TCGA-NH-A5IV-01 2 27465611 27465611 C T CAD Missense_Mutation p.R2116W 0.53 tolerated(0.18) benign(0) TCGA-NH-A5IV-01 2 27480802 27480802 G A SLC30A3 Silent p.T183T 0.39 TCGA-NH-A5IV-01 2 27683962 27683962 T C IFT172 Splice_Site p.X815_splice 0.39 TCGA-NH-A5IV-01 2 28851976 28851976 G A PLB1 Missense_Mutation p.V1248I 0.32 tolerated(0.56) benign(0.037) TCGA-NH-A5IV-01 2 29258420 29258420 G A FAM179A Silent p.R772R 0.42 TCGA-NH-A5IV-01 2 29419701 29419701 G T ALK Missense_Mutation p.Q1367K 0.35 deleterious(0) probably_damaging(0.995) TCGA-NH-A5IV-01 2 33774750 33774750 G A RASGRP3 Missense_Mutation p.G492R 0.36 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 2 3392114 3392114 G A TRAPPC12 Silent p.A240A 0.14 TCGA-NH-A5IV-01 2 3425727 3425727 A G TRAPPC12 Missense_Mutation p.S414G 0.44 tolerated(0.18) benign(0.016) TCGA-NH-A5IV-01 2 3653735 3653735 G A COLEC11 Intron 0.34 TCGA-NH-A5IV-01 2 37208749 37208749 G A HEATR5B Missense_Mutation p.R2034C 0.46 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 2 37398608 37398609 GT - SULT6B1 Frame_Shift_Del p.H212Rfs*12 0.30 TCGA-NH-A5IV-01 2 37439179 37439179 G A CEBPZ Silent p.N869N 0.10 TCGA-NH-A5IV-01 2 37454690 37454690 T C CEBPZ Missense_Mutation p.Y549C 0.44 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 2 38216759 38216759 G T RMDN2 Missense_Mutation p.K467N 0.11 deleterious(0) probably_damaging(0.983) TCGA-NH-A5IV-01 2 39515275 39515275 T G MAP4K3 Missense_Mutation p.K487N 0.35 tolerated(0.45) benign(0.154) TCGA-NH-A5IV-01 2 39934244 39934244 C T TMEM178A Silent p.C190C 0.13 TCGA-NH-A5IV-01 2 42557032 42557032 G A EML4 Silent p.A877A 0.15 TCGA-NH-A5IV-01 2 43452512 43452512 C - ZFP36L2 Frame_Shift_Del p.G144Afs*43 0.09 TCGA-NH-A5IV-01 2 44065000 44065000 G A ABCG5 Nonsense_Mutation p.Q80* 0.31 TCGA-NH-A5IV-01 2 44571658 44571658 C T PREPL Splice_Site p.X137_splice 0.11 TCGA-NH-A5IV-01 2 46808686 46808686 C A PIGF Silent p.V197V 0.44 TCGA-NH-A5IV-01 2 46985735 46985735 G T SOCS5 Missense_Mutation p.E22D 0.34 tolerated_low_confidence(0.71) benign(0.003) TCGA-NH-A5IV-01 2 47238564 47238564 C T TTC7A Missense_Mutation p.S461F 0.41 tolerated(0.64) benign(0.009) TCGA-NH-A5IV-01 2 47382410 47382410 A G C2orf61 5'UTR 0.37 TCGA-NH-A5IV-01 2 47707956 47707956 G A MSH2 Silent p.S860S 0.43 TCGA-NH-A5IV-01 2 48025856 48025857 - A MSH6 Frame_Shift_Ins p.R248Tfs*8 0.29 TCGA-NH-A5IV-01 2 51153073 51153073 C A NRXN1 Intron 0.34 TCGA-NH-A5IV-01 2 51255289 51255289 C T NRXN1 Silent p.T41T 0.33 TCGA-NH-A5IV-01 2 54856625 54856625 A G SPTBN1 Missense_Mutation p.K785R 0.28 deleterious(0.03) possibly_damaging(0.714) TCGA-NH-A5IV-01 2 54895821 54895821 T A SPTBN1 3'UTR 0.42 TCGA-NH-A5IV-01 2 55253228 55253228 T - RTN4 Frame_Shift_Del p.V670Yfs*4 0.25 TCGA-NH-A5IV-01 2 55253407 55253407 C T RTN4 Missense_Mutation p.V610I 0.36 tolerated(0.23) possibly_damaging(0.677) TCGA-NH-A5IV-01 2 61147532 61147532 C T REL Missense_Mutation p.R313C 0.30 deleterious_low_confidence(0.01) benign(0) TCGA-NH-A5IV-01 2 61149491 61149491 G A REL Missense_Mutation p.A561T 0.11 tolerated_low_confidence(0.28) benign(0.017) TCGA-NH-A5IV-01 2 61414971 61414971 C T AHSA2 3'UTR 0.33 TCGA-NH-A5IV-01 2 61515914 61515914 C T USP34 Nonsense_Mutation p.W1549* 0.41 TCGA-NH-A5IV-01 2 62991424 62991424 A - EHBP1 Frame_Shift_Del p.N64Ifs*19 0.29 TCGA-NH-A5IV-01 2 63272282 63272282 C T EHBP1 Missense_Mutation p.A1191V 0.47 deleterious(0.02) probably_damaging(0.913) TCGA-NH-A5IV-01 2 65495885 65495885 C A ACTR2 3'UTR 0.41 TCGA-NH-A5IV-01 2 65571949 65571949 G A SPRED2 Silent p.G36G 0.36 TCGA-NH-A5IV-01 2 68607557 68607557 T C PLEK Missense_Mutation p.M47T 0.41 tolerated(0.22) possibly_damaging(0.792) TCGA-NH-A5IV-01 2 69207897 69207897 C T GKN1 Missense_Mutation p.T181M 0.44 tolerated(0.06) benign(0.28) TCGA-NH-A5IV-01 2 69240709 69240709 C T ANTXR1 Silent p.A26A 0.12 TCGA-NH-A5IV-01 2 70131742 70131742 A T SNRNP27 3'UTR 0.31 TCGA-NH-A5IV-01 2 70187953 70187953 G A ASPRV1 Nonsense_Mutation p.Q290* 0.46 TCGA-NH-A5IV-01 2 71036414 71036414 G T CLEC4F Missense_Mutation p.L587I 0.32 deleterious_low_confidence(0.04) benign(0.099) TCGA-NH-A5IV-01 2 71191891 71191891 A G ATP6V1B1 Missense_Mutation p.D425G 0.42 deleterious(0.02) probably_damaging(0.932) TCGA-NH-A5IV-01 2 71191895 71191895 G A ATP6V1B1 Silent p.V426V 0.40 TCGA-NH-A5IV-01 2 71360545 71360545 A G MPHOSPH10 Missense_Mutation p.K203E 0.40 deleterious(0.01) possibly_damaging(0.794) TCGA-NH-A5IV-01 2 71797751 71797751 C - DYSF Frame_Shift_Del p.P1038Rfs*37 0.27 TCGA-NH-A5IV-01 2 73114727 73114727 G A SPR Missense_Mutation p.A56T 0.42 tolerated(0.19) benign(0.022) TCGA-NH-A5IV-01 2 73493613 73493613 C A FBXO41 Missense_Mutation p.G368V 0.47 tolerated(0.37) benign(0.022) TCGA-NH-A5IV-01 2 73679192 73679192 G A ALMS1 Silent p.L1845L 0.09 TCGA-NH-A5IV-01 2 73868169 73868169 G A NAT8 Missense_Mutation p.T196M 0.42 tolerated(0.14) benign(0.256) TCGA-NH-A5IV-01 2 74462325 74462325 G A SLC4A5 Missense_Mutation p.A779V 0.36 deleterious(0) benign(0.411) TCGA-NH-A5IV-01 2 74900921 74900921 G A SEMA4F Missense_Mutation p.R263H 0.39 tolerated(0.24) benign(0.004) TCGA-NH-A5IV-01 2 75276727 75276727 G A TACR1 Silent p.S352S 0.48 TCGA-NH-A5IV-01 2 84752851 84752851 A G DNAH6 Missense_Mutation p.K130E 0.40 tolerated_low_confidence(0.47) benign(0.001) TCGA-NH-A5IV-01 2 84861637 84861637 C T DNAH6 Missense_Mutation p.R1509C 0.41 deleterious(0) probably_damaging(0.977) TCGA-NH-A5IV-01 2 84904127 84904127 A G DNAH6 Splice_Site p.X2205_splice 0.42 TCGA-NH-A5IV-01 2 85826422 85826422 T C TMEM150A Missense_Mutation p.H198R 0.14 deleterious(0.03) possibly_damaging(0.742) TCGA-NH-A5IV-01 2 86352199 86352199 G A PTCD3 Missense_Mutation p.M266I 0.12 deleterious(0) probably_damaging(0.966) TCGA-NH-A5IV-01 2 88427539 88427539 T C FABP1 5'UTR 0.35 TCGA-NH-A5IV-01 2 88857142 88857142 A - EIF2AK3 3'UTR 0.30 TCGA-NH-A5IV-01 2 89103771 89103771 T - ANKRD36BP2 RNA 0.30 TCGA-NH-A5IV-01 2 89544412 89544412 C T IGKV2-30 Missense_Mutation p.R71H 0.44 tolerated(0.09) benign(0.005) TCGA-NH-A5IV-01 2 8998806 8998806 C T MBOAT2 3'UTR 0.42 TCGA-NH-A5IV-01 2 90153789 90153789 C - IGKV3D-15 Frame_Shift_Del p.P16Qfs*7 0.35 TCGA-NH-A5IV-01 2 96964426 96964426 A G SNRNP200 Silent p.D299D 0.40 TCGA-NH-A5IV-01 2 97637864 97637865 GG A FAM178B Frame_Shift_Del p.P113Cfs*31 0.33 TCGA-NH-A5IV-01 2 98206218 98206218 A G ANKRD36B RNA 0.48 TCGA-NH-A5IV-01 2 98351029 98351029 G A ZAP70 Silent p.T312T 0.30 TCGA-NH-A5IV-01 2 99439494 99439494 G A KIAA1211L Silent p.P414P 0.45 TCGA-NH-A5IV-01 3 10353759 10353759 G - SEC13 Frame_Shift_Del p.H114Mfs*5 0.28 TCGA-NH-A5IV-01 3 107474525 107474525 G T BBX Missense_Mutation p.E302D 0.08 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 3 108407486 108407486 A G DZIP3 Missense_Mutation p.H1106R 0.03 tolerated(0.24) benign(0.013) TCGA-NH-A5IV-01 3 108698464 108698464 G A MORC1 Missense_Mutation p.A792V 0.20 tolerated(0.24) benign(0.004) TCGA-NH-A5IV-01 3 108754316 108754317 - T MORC1 Splice_Site p.X444_splice 0.31 TCGA-NH-A5IV-01 3 109129026 109129026 C T RP11-702L6.4 RNA 0.38 TCGA-NH-A5IV-01 3 10967753 10967753 G A SLC6A11 Nonsense_Mutation p.W395* 0.36 TCGA-NH-A5IV-01 3 111296363 111296363 G A CD96 Silent p.T186T 0.27 TCGA-NH-A5IV-01 3 112969661 112969661 A G BOC Silent p.P119P 0.47 TCGA-NH-A5IV-01 3 113005524 113005524 C - BOC Frame_Shift_Del p.P1055Hfs*20 0.09 TCGA-NH-A5IV-01 3 113115475 113115475 G A WDR52 Missense_Mutation p.R557W 0.50 tolerated(0.06) probably_damaging(0.968) TCGA-NH-A5IV-01 3 113325954 113325954 G A SIDT1 Missense_Mutation p.V491I 0.27 tolerated(0.44) benign(0.014) TCGA-NH-A5IV-01 3 113342323 113342323 C A SIDT1 Missense_Mutation p.L714M 0.37 deleterious(0) probably_damaging(0.995) TCGA-NH-A5IV-01 3 113344979 113344979 C T SIDT1 Missense_Mutation p.R780C 0.14 deleterious(0) probably_damaging(0.987) TCGA-NH-A5IV-01 3 113371900 113371901 - A KIAA2018 3'UTR 0.41 TCGA-NH-A5IV-01 3 113441779 113441779 T - NAA50 Frame_Shift_Del p.D103Mfs*40 0.27 TCGA-NH-A5IV-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.31 TCGA-NH-A5IV-01 3 119316809 119316809 T C PLA1A Silent p.L17L 0.11 TCGA-NH-A5IV-01 3 119325652 119325652 C T PLA1A Silent p.C35C 0.38 TCGA-NH-A5IV-01 3 120499907 120499907 G A GTF2E1 Missense_Mutation p.A304T 0.35 tolerated(0.42) benign(0) TCGA-NH-A5IV-01 3 120500126 120500126 C T GTF2E1 Nonsense_Mutation p.R377* 0.43 TCGA-NH-A5IV-01 3 122399784 122399784 C - PARP14 Frame_Shift_Del p.P20Rfs*4 0.15 TCGA-NH-A5IV-01 3 122631064 122631064 C T SEMA5B Missense_Mutation p.G1005R 0.47 deleterious(0) probably_damaging(0.983) TCGA-NH-A5IV-01 3 123166426 123166426 G A ADCY5 Missense_Mutation p.R323C 0.40 deleterious(0.01) possibly_damaging(0.899) TCGA-NH-A5IV-01 3 124952718 124952718 T - ZNF148 Frame_Shift_Del p.K284Nfs*2 0.28 TCGA-NH-A5IV-01 3 126062510 126062510 A - KLF15 3'UTR 0.39 TCGA-NH-A5IV-01 3 126220106 126220106 T - UROC1 Frame_Shift_Del p.K367Rfs*77 0.35 TCGA-NH-A5IV-01 3 12623630 12623630 C T MKRN2 Missense_Mutation p.R377W 0.40 deleterious(0.01) probably_damaging(1) TCGA-NH-A5IV-01 3 126261546 126261546 G A CHST13 3'UTR 0.57 TCGA-NH-A5IV-01 3 127398979 127398979 C T ABTB1 Missense_Mutation p.A394V 0.31 tolerated(0.24) benign(0.047) TCGA-NH-A5IV-01 3 127429478 127429478 G A MGLL Silent p.L181L 0.31 TCGA-NH-A5IV-01 3 129288697 129288697 A G PLXND1 Missense_Mutation p.L1285P 0.30 deleterious(0) probably_damaging(0.982) TCGA-NH-A5IV-01 3 130282060 130282060 C T COL6A6 Silent p.Y71Y 0.06 TCGA-NH-A5IV-01 3 130285920 130285920 A G COL6A6 Missense_Mutation p.I553V 0.56 tolerated(1) benign(0.009) TCGA-NH-A5IV-01 3 130452611 130452611 C T PIK3R4 Missense_Mutation p.V411I 0.06 tolerated(0.12) benign(0.225) TCGA-NH-A5IV-01 3 13361350 13361350 G T NUP210 Missense_Mutation p.L1766M 0.24 deleterious(0) probably_damaging(0.979) TCGA-NH-A5IV-01 3 133648140 133648140 T G C3orf36 5'UTR 0.37 TCGA-NH-A5IV-01 3 133661449 133661449 C T SLCO2A1 Missense_Mutation p.R542H 0.42 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 3 133667484 133667484 G A SLCO2A1 Missense_Mutation p.A334V 0.30 deleterious(0) benign(0.169) TCGA-NH-A5IV-01 3 138724749 138724749 C A PRR23A Missense_Mutation p.G121V 0.44 tolerated(0.08) probably_damaging(0.954) TCGA-NH-A5IV-01 3 138739559 138739559 G A PRR23B 5'UTR 0.43 TCGA-NH-A5IV-01 3 138763139 138763139 G A PRR23C Silent p.V108V 0.33 TCGA-NH-A5IV-01 3 1414122 1414122 A - CNTN6 Frame_Shift_Del p.G547Efs*16 0.10 TCGA-NH-A5IV-01 3 141535583 141535583 T C GRK7 Silent p.H451H 0.11 TCGA-NH-A5IV-01 3 14188796 14188796 C T XPC Silent p.G866G 0.27 TCGA-NH-A5IV-01 3 142136042 142136042 T C XRN1 Missense_Mutation p.Y459C 0.40 deleterious(0) probably_damaging(0.987) TCGA-NH-A5IV-01 3 142539837 142539837 C T PCOLCE2 Missense_Mutation p.A334T 0.38 deleterious(0.02) benign(0.168) TCGA-NH-A5IV-01 3 142775212 142775212 A - U2SURP Frame_Shift_Del p.K1005Nfs*30 0.26 TCGA-NH-A5IV-01 3 142840270 142840270 G A CHST2 Silent p.L204L 0.07 TCGA-NH-A5IV-01 3 143412096 143412096 T - SLC9A9 Frame_Shift_Del p.N196Mfs*15 0.29 TCGA-NH-A5IV-01 3 1445212 1445212 A - CNTN6 3'UTR 0.40 TCGA-NH-A5IV-01 3 147108812 147108812 A G ZIC4 Missense_Mutation p.S354P 0.34 tolerated(0.71) probably_damaging(0.939) TCGA-NH-A5IV-01 3 148545843 148545843 C T CPB1 Silent p.R42R 0.45 TCGA-NH-A5IV-01 3 148890111 148890111 A T HPS3 3'UTR 0.17 TCGA-NH-A5IV-01 3 150289746 150289746 A - EIF2A Frame_Shift_Del p.N273Mfs*7 0.26 TCGA-NH-A5IV-01 3 150644392 150644392 G A CLRN1 3'Flank 0.27 TCGA-NH-A5IV-01 3 15076232 15076232 G A NR2C2 Missense_Mutation p.G449S 0.37 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 3 151155193 151155193 A G IGSF10 Missense_Mutation p.Y2386H 0.17 deleterious(0) possibly_damaging(0.612) TCGA-NH-A5IV-01 3 151161457 151161457 C T IGSF10 Missense_Mutation p.G1760R 0.39 deleterious(0.02) probably_damaging(0.976) TCGA-NH-A5IV-01 3 151164709 151164709 C - IGSF10 Frame_Shift_Del p.R1021Gfs*41 0.12 TCGA-NH-A5IV-01 3 152881875 152881875 A - RAP2B 3'UTR 0.14 TCGA-NH-A5IV-01 3 156266712 156266712 C T SSR3 Missense_Mutation p.R114Q 0.05 tolerated(0.12) benign(0.184) TCGA-NH-A5IV-01 3 15643045 15643045 C T HACL1 5'UTR 0.25 TCGA-NH-A5IV-01 3 158538072 158538072 G A MFSD1 Missense_Mutation p.V323I 0.41 tolerated(0.08) benign(0.259) TCGA-NH-A5IV-01 3 158545124 158545124 T C MFSD1 Silent p.T513T 0.41 TCGA-NH-A5IV-01 3 160135559 160135559 C T SMC4 Missense_Mutation p.R496C 0.18 deleterious(0.04) benign(0.331) TCGA-NH-A5IV-01 3 167083710 167083710 T A ZBBX Silent p.S79S 0.05 TCGA-NH-A5IV-01 3 168833264 168833264 C - MECOM Frame_Shift_Del p.G676Efs*33 0.25 TCGA-NH-A5IV-01 3 169550788 169550788 A G LRRIQ4 Silent p.L449L 0.34 TCGA-NH-A5IV-01 3 169656114 169656114 G A SAMD7 Silent p.Q387Q 0.38 TCGA-NH-A5IV-01 3 170198373 170198373 G A SLC7A14 Silent p.T566T 0.37 TCGA-NH-A5IV-01 3 170723826 170723826 C T SLC2A2 Silent p.V227V 0.35 TCGA-NH-A5IV-01 3 170893075 170893075 G A TNIK Missense_Mutation p.R247W 0.22 deleterious(0.01) unknown(0) TCGA-NH-A5IV-01 3 173998974 173998974 C T NLGN1 Missense_Mutation p.P785S 0.28 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-NH-A5IV-01 3 178952007 178952007 A G PIK3CA Missense_Mutation p.Y1021C 0.40 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 3 180379681 180379681 C T CCDC39 Missense_Mutation p.A109T 0.37 tolerated(0.6) benign(0.005) TCGA-NH-A5IV-01 3 183975378 183975378 C A ECE2 Missense_Mutation p.P105Q 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NH-A5IV-01 3 184052537 184052537 C T EIF4G1 Silent p.D1554D 0.40 TCGA-NH-A5IV-01 3 185226465 185226465 C T LIPH 3'UTR 0.33 TCGA-NH-A5IV-01 3 186392971 186392971 G A HRG Missense_Mutation p.D245N 0.33 tolerated(1) possibly_damaging(0.555) TCGA-NH-A5IV-01 3 186954350 186954350 C T MASP1 Missense_Mutation p.G437S 0.27 deleterious(0) probably_damaging(0.946) TCGA-NH-A5IV-01 3 189507524 189507524 G - TP63 Intron 0.45 TCGA-NH-A5IV-01 3 190573137 190573137 G A GMNC Missense_Mutation p.R318C 0.47 tolerated(0.09) benign(0.037) TCGA-NH-A5IV-01 3 194126477 194126477 G T ATP13A3 3'UTR 0.41 TCGA-NH-A5IV-01 3 194325109 194325109 C A TMEM44 Missense_Mutation p.Q408H 0.37 tolerated(0.07) benign(0.03) TCGA-NH-A5IV-01 3 194408006 194408006 A G FAM43A Missense_Mutation p.K151E 0.42 deleterious(0) possibly_damaging(0.579) TCGA-NH-A5IV-01 3 194408465 194408465 G A FAM43A Missense_Mutation p.V304I 0.12 tolerated_low_confidence(0.1) benign(0.051) TCGA-NH-A5IV-01 3 195395446 195395446 A G SDHAP2 RNA 0.04 TCGA-NH-A5IV-01 3 195451972 195451972 C T MUC20 Silent p.S166S 0.07 TCGA-NH-A5IV-01 3 195453126 195453126 C T MUC20 Missense_Mutation p.P551L 0.29 tolerated(0.38) unknown(0) TCGA-NH-A5IV-01 3 195487898 195487898 T - MUC4 Frame_Shift_Del p.N4902Tfs*8 0.27 TCGA-NH-A5IV-01 3 195513591 195513591 G A MUC4 Silent p.T1620T 0.31 TCGA-NH-A5IV-01 3 195513631 195513631 G T MUC4 Missense_Mutation p.S1607Y 0.27 possibly_damaging(0.892) TCGA-NH-A5IV-01 3 195706681 195706681 T C SDHAP1 RNA 0.24 TCGA-NH-A5IV-01 3 196533532 196533532 C - PAK2 Frame_Shift_Del p.P185Rfs*14 0.18 TCGA-NH-A5IV-01 3 196910913 196910913 A - DLG1 Intron 0.36 TCGA-NH-A5IV-01 3 197427978 197427978 C T KIAA0226 Missense_Mutation p.R256Q 0.50 tolerated(0.63) benign(0.002) TCGA-NH-A5IV-01 3 20202588 20202588 C A SGOL1 3'UTR 0.06 TCGA-NH-A5IV-01 3 20215909 20215909 T C SGOL1 Missense_Mutation p.S372G 0.17 deleterious(0.02) benign(0.085) TCGA-NH-A5IV-01 3 21792617 21792617 G A ZNF385D 5'UTR 0.28 TCGA-NH-A5IV-01 3 23930835 23930835 A T UBE2E1 Intron 0.29 TCGA-NH-A5IV-01 3 23960701 23960701 C T RPL15 Silent p.R108R 0.45 TCGA-NH-A5IV-01 3 23960845 23960845 C T RPL15 Silent p.H156H 0.31 TCGA-NH-A5IV-01 3 24164611 24164611 G A THRB Missense_Mutation p.P384S 0.36 tolerated(0.49) benign(0.027) TCGA-NH-A5IV-01 3 25668727 25668727 C T TOP2B Missense_Mutation p.R651H 0.34 deleterious(0) probably_damaging(0.931) TCGA-NH-A5IV-01 3 27436091 27436091 A - SLC4A7 Frame_Shift_Del p.L1003Wfs*11 0.27 TCGA-NH-A5IV-01 3 27759295 27759295 A T EOMES Intron 0.55 TCGA-NH-A5IV-01 3 28357824 28357825 - T CMC1 Frame_Shift_Ins p.T39Yfs*31 0.21 TCGA-NH-A5IV-01 3 29938947 29938947 C - RBMS3 Frame_Shift_Del p.P291Lfs*26 0.28 TCGA-NH-A5IV-01 3 30713553 30713555 TCT - TGFBR2 In_Frame_Del p.F319del 0.34 TCGA-NH-A5IV-01 3 3189911 3189911 T C TRNT1 3'UTR 0.26 TCGA-NH-A5IV-01 3 32932011 32932011 G T TRIM71 Missense_Mutation p.A439S 0.33 tolerated(0.28) benign(0.018) TCGA-NH-A5IV-01 3 32932879 32932879 G T TRIM71 Missense_Mutation p.G728V 0.36 tolerated(0.06) benign(0.109) TCGA-NH-A5IV-01 3 32933023 32933023 C A TRIM71 Missense_Mutation p.P776H 0.37 deleterious(0) possibly_damaging(0.88) TCGA-NH-A5IV-01 3 33400793 33400793 C A FBXL2 Missense_Mutation p.L47M 0.47 tolerated(0.07) probably_damaging(0.998) TCGA-NH-A5IV-01 3 33425559 33425559 C T FBXL2 Missense_Mutation p.R344W 0.45 deleterious(0.01) possibly_damaging(0.453) TCGA-NH-A5IV-01 3 33626274 33626274 C T CLASP2 Missense_Mutation p.S737N 0.07 deleterious(0.04) probably_damaging(0.97) TCGA-NH-A5IV-01 3 37032838 37032838 A G EPM2AIP1 Silent p.D577D 0.10 TCGA-NH-A5IV-01 3 37368785 37368785 A - GOLGA4 Frame_Shift_Del p.N1827Tfs*6 0.26 TCGA-NH-A5IV-01 3 38049637 38049637 C T PLCD1 Missense_Mutation p.D706N 0.30 tolerated(1) benign(0.004) TCGA-NH-A5IV-01 3 38156521 38156521 G A DLEC1 Missense_Mutation p.R1278H 0.28 deleterious(0.02) possibly_damaging(0.602) TCGA-NH-A5IV-01 3 38169315 38169315 C T ACAA1 Silent p.R196R 0.06 TCGA-NH-A5IV-01 3 38318532 38318532 C T SLC22A13 Silent p.A492A 0.31 TCGA-NH-A5IV-01 3 38770182 38770182 G A SCN10A Missense_Mutation p.H831Y 0.13 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 3 39374568 39374568 T - CCR8 Frame_Shift_Del p.F250Sfs*25 0.26 TCGA-NH-A5IV-01 3 40231856 40231856 C T MYRIP Missense_Mutation p.R523W 0.50 tolerated(0.06) benign(0.01) TCGA-NH-A5IV-01 3 40574686 40574686 C T ZNF621 3'UTR 0.34 TCGA-NH-A5IV-01 3 41266488 41266488 A C CTNNB1 Silent p.R95R 0.40 TCGA-NH-A5IV-01 3 42685415 42685415 C G NKTR Nonsense_Mutation p.Y1407* 0.39 TCGA-NH-A5IV-01 3 42750530 42750530 C - CCDC13 Frame_Shift_Del p.G697Afs*3 0.29 TCGA-NH-A5IV-01 3 43408324 43408324 C - ANO10 3'UTR 0.28 TCGA-NH-A5IV-01 3 439908 439908 A G CHL1 Splice_Site p.X1032_splice 0.10 TCGA-NH-A5IV-01 3 44449192 44449192 T - TCAIM 3'UTR 0.20 TCGA-NH-A5IV-01 3 44803062 44803062 C T KIAA1143 Silent p.R11R 0.40 TCGA-NH-A5IV-01 3 45137032 45137032 A G CDCP1 Silent p.N351N 0.39 TCGA-NH-A5IV-01 3 45785123 45785123 G A SACM1L Missense_Mutation p.D576N 0.36 deleterious(0.04) benign(0.332) TCGA-NH-A5IV-01 3 46414625 46414625 T - CCR5 Frame_Shift_Del p.F79Sfs*26 0.26 TCGA-NH-A5IV-01 3 46712991 46712991 A G ALS2CL Missense_Mutation p.L923P 0.40 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 3 46875442 46875442 C T PRSS42 Silent p.A48A 0.06 TCGA-NH-A5IV-01 3 47032915 47032915 T C NBEAL2 Missense_Mutation p.V221A 0.42 deleterious(0) benign(0.015) TCGA-NH-A5IV-01 3 47316957 47316957 T - KIF9 Frame_Shift_Del p.D40Tfs*64 0.31 TCGA-NH-A5IV-01 3 47454295 47454295 G - PTPN23 Frame_Shift_Del p.L1513Wfs*71 0.29 TCGA-NH-A5IV-01 3 47460265 47460265 C T SCAP Missense_Mutation p.R670Q 0.38 tolerated(0.06) benign(0.135) TCGA-NH-A5IV-01 3 48461117 48461117 C T PLXNB1 Missense_Mutation p.A860T 0.51 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 3 48629383 48629383 C - COL7A1 Frame_Shift_Del p.W435* 0.23 TCGA-NH-A5IV-01 3 48694674 48694674 G A CELSR3 Missense_Mutation p.R1286C 0.47 deleterious(0) probably_damaging(0.932) TCGA-NH-A5IV-01 3 48698463 48698464 CA - CELSR3 Frame_Shift_Del p.V535Afs*36 0.28 TCGA-NH-A5IV-01 3 48802482 48802482 T C PRKAR2A Silent p.V276V 0.46 TCGA-NH-A5IV-01 3 49210236 49210236 C T KLHDC8B Nonsense_Mutation p.Q12* 0.31 TCGA-NH-A5IV-01 3 49338106 49338106 A G USP4 Missense_Mutation p.W436R 0.34 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 3 49395767 49395767 G A GPX1 5'UTR 0.34 TCGA-NH-A5IV-01 3 49699850 49699850 C T BSN Silent p.G3524G 0.21 TCGA-NH-A5IV-01 3 49726126 49726127 - G MST1 5'UTR 0.22 TCGA-NH-A5IV-01 3 49785527 49785527 A - IP6K1 5'UTR 0.32 TCGA-NH-A5IV-01 3 49897142 49897142 C T CAMKV Missense_Mutation p.R372H 0.43 tolerated(0.13) benign(0) TCGA-NH-A5IV-01 3 49897145 49897145 G T CAMKV Missense_Mutation p.A371D 0.33 tolerated(0.22) benign(0.021) TCGA-NH-A5IV-01 3 50231272 50231272 G A GNAT1 Missense_Mutation p.G179D 0.27 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 3 50334067 50334067 C - NAT6 Frame_Shift_Del p.R299Afs*48 0.29 TCGA-NH-A5IV-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.24 TCGA-NH-A5IV-01 3 51430941 51430941 A G RBM15B Missense_Mutation p.E704G 0.39 tolerated(0.13) benign(0.344) TCGA-NH-A5IV-01 3 51458110 51458110 G A VPRBP Missense_Mutation p.R343W 0.45 deleterious(0) probably_damaging(0.963) TCGA-NH-A5IV-01 3 51812984 51812984 A G IQCF6 5'UTR 0.39 TCGA-NH-A5IV-01 3 52265201 52265201 G A TWF2 Missense_Mutation p.A142V 0.44 deleterious(0.04) benign(0.003) TCGA-NH-A5IV-01 3 52282995 52282995 T C PPM1M Silent p.A122A 0.37 TCGA-NH-A5IV-01 3 52406943 52406943 C T DNAH1 Missense_Mutation p.R2287C 0.09 benign(0.168) TCGA-NH-A5IV-01 3 5246764 5246764 A T EDEM1 Missense_Mutation p.N352I 0.27 deleterious(0) probably_damaging(0.962) TCGA-NH-A5IV-01 3 52474789 52474789 C T SEMA3G Missense_Mutation p.A327T 0.48 tolerated(0.09) probably_damaging(0.968) TCGA-NH-A5IV-01 3 52522141 52522141 A G NISCH Missense_Mutation p.N878S 0.38 tolerated(0.17) benign(0.064) TCGA-NH-A5IV-01 3 52523539 52523539 G A NISCH Missense_Mutation p.E1101K 0.38 tolerated(0.43) benign(0.07) TCGA-NH-A5IV-01 3 52545695 52545695 C T STAB1 Silent p.A939A 0.36 TCGA-NH-A5IV-01 3 52833387 52833387 G A ITIH3 Splice_Site p.X264_splice 0.10 TCGA-NH-A5IV-01 3 53376232 53376232 T C DCP1A Silent p.P81P 0.42 TCGA-NH-A5IV-01 3 53752756 53752756 G A CACNA1D Missense_Mutation p.C509Y 0.39 deleterious(0.02) benign(0.202) TCGA-NH-A5IV-01 3 54604095 54604095 T C CACNA2D3 Silent p.D284D 0.10 TCGA-NH-A5IV-01 3 54959088 54959088 C T LRTM1 Silent p.T54T 0.38 TCGA-NH-A5IV-01 3 55504095 55504095 G A WNT5A 3'UTR 0.36 TCGA-NH-A5IV-01 3 56657165 56657168 AAGT - FAM208A 3'UTR 0.44 TCGA-NH-A5IV-01 3 57132158 57132158 T C IL17RD Missense_Mutation p.T525A 0.41 tolerated(0.27) benign(0.001) TCGA-NH-A5IV-01 3 57271557 57271558 TT - APPL1 Frame_Shift_Del p.L65Kfs*4 0.25 TCGA-NH-A5IV-01 3 57443646 57443646 T - DNAH12 Frame_Shift_Del p.K1023Nfs*9 0.27 TCGA-NH-A5IV-01 3 58510265 58510266 GA - ACOX2 Frame_Shift_Del p.P472Ifs*9 0.31 TCGA-NH-A5IV-01 3 62358154 62358154 G A FEZF2 Silent p.N130N 0.44 TCGA-NH-A5IV-01 3 62358621 62358621 G - FEZF2 Intron 0.31 TCGA-NH-A5IV-01 3 62535774 62535774 T C CADPS Silent p.R590R 0.35 TCGA-NH-A5IV-01 3 64640030 64640030 C T ADAMTS9 Missense_Mutation p.V439M 0.15 deleterious(0) probably_damaging(0.968) TCGA-NH-A5IV-01 3 64672476 64672476 G T ADAMTS9 Missense_Mutation p.S95Y 0.49 deleterious(0.01) benign(0.012) TCGA-NH-A5IV-01 3 67054243 67054243 T G KBTBD8 Silent p.A284A 0.33 TCGA-NH-A5IV-01 3 68782283 68782283 T C FAM19A4 3'UTR 0.44 TCGA-NH-A5IV-01 3 68782297 68782297 C T FAM19A4 Missense_Mutation p.R140Q 0.34 tolerated_low_confidence(0.07) benign(0.243) TCGA-NH-A5IV-01 3 6903062 6903062 G A GRM7 5'UTR 0.12 TCGA-NH-A5IV-01 3 69087865 69087865 A G TMF1 Silent p.L667L 0.35 TCGA-NH-A5IV-01 3 69168838 69168838 A G LMOD3 Missense_Mutation p.L223P 0.38 tolerated(0.05) probably_damaging(0.996) TCGA-NH-A5IV-01 3 71821968 71821968 A - PROK2 Frame_Shift_Del p.F99Lfs*28 0.23 TCGA-NH-A5IV-01 3 73046118 73046118 T - PPP4R2 5'UTR 0.10 TCGA-NH-A5IV-01 3 74350673 74350673 C T CNTN3 Silent p.T657T 0.11 TCGA-NH-A5IV-01 3 77612453 77612453 C A ROBO2 Missense_Mutation p.A568E 0.42 deleterious(0.02) possibly_damaging(0.82) TCGA-NH-A5IV-01 3 85851230 85851230 T C CADM2 Missense_Mutation p.V34A 0.35 tolerated(0.5) benign(0.062) TCGA-NH-A5IV-01 3 8787266 8787266 G A CAV3 Missense_Mutation p.V57M 0.34 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 3 88042873 88042873 G A HTR1F 3'UTR 0.04 TCGA-NH-A5IV-01 3 93722625 93722625 T C ARL13B Missense_Mutation p.Y85H 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-NH-A5IV-01 3 93733994 93733996 AAT - STX19 In_Frame_Del p.I40del 0.32 TCGA-NH-A5IV-01 3 9483311 9483311 A G SETD5 Missense_Mutation p.H282R 0.47 deleterious(0) probably_damaging(0.993) TCGA-NH-A5IV-01 3 96706292 96706292 C T EPHA6 Missense_Mutation p.A190V 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A5IV-01 3 97596475 97596475 C T CRYBG3 Missense_Mutation p.A198V 0.10 tolerated(0.44) benign(0.012) TCGA-NH-A5IV-01 3 9771501 9771501 T C CPNE9 3'UTR 0.36 TCGA-NH-A5IV-01 3 9785937 9785937 G A BRPF1 Missense_Mutation p.A889T 0.07 tolerated(0.25) benign(0.043) TCGA-NH-A5IV-01 3 98217288 98217288 T - OR5K2 Frame_Shift_Del p.F257Sfs*24 0.28 TCGA-NH-A5IV-01 3 9831553 9831553 G T TADA3 Missense_Mutation p.P101H 0.36 deleterious(0.02) benign(0.001) TCGA-NH-A5IV-01 3 9879677 9879677 G - RPUSD3 3'UTR 0.33 TCGA-NH-A5IV-01 3 99514534 99514534 C - COL8A1 Frame_Shift_Del p.H599Mfs*24 0.28 TCGA-NH-A5IV-01 3 99569630 99569630 G A FILIP1L Missense_Mutation p.T297M 0.03 tolerated(0.09) benign(0.238) TCGA-NH-A5IV-01 3 9991550 9991550 G A PRRT3 Missense_Mutation p.P84S 0.37 deleterious_low_confidence(0.03) benign(0.038) TCGA-NH-A5IV-01 4 100205556 100205556 C A ADH1A Missense_Mutation p.K189N 0.05 deleterious(0.01) possibly_damaging(0.759) TCGA-NH-A5IV-01 4 1018713 1018713 C T FGFRL1 Missense_Mutation p.P365S 0.37 tolerated(0.19) benign(0.04) TCGA-NH-A5IV-01 4 102030164 102030164 T A PPP3CA Missense_Mutation p.T111S 0.50 deleterious(0.03) possibly_damaging(0.616) TCGA-NH-A5IV-01 4 10445890 10445890 T C ZNF518B Missense_Mutation p.H688R 0.07 tolerated(0.88) benign(0.004) TCGA-NH-A5IV-01 4 10542211 10542211 G A CLNK Missense_Mutation p.P170L 0.47 tolerated(0.1) benign(0.275) TCGA-NH-A5IV-01 4 113571675 113571675 C T LARP7 Silent p.F458F 0.39 TCGA-NH-A5IV-01 4 113578649 113578649 G A LARP7 3'UTR 0.46 TCGA-NH-A5IV-01 4 114199034 114199034 C T ANK2 Silent p.S575S 0.32 TCGA-NH-A5IV-01 4 118005250 118005250 A G TRAM1L1 3'UTR 0.32 TCGA-NH-A5IV-01 4 123094242 123094242 G A KIAA1109 Missense_Mutation p.R50Q 0.44 possibly_damaging(0.791) TCGA-NH-A5IV-01 4 123193549 123193549 A - KIAA1109 Frame_Shift_Del p.M2814* 0.21 TCGA-NH-A5IV-01 4 123207765 123207765 C T KIAA1109 Missense_Mutation p.T3036I 0.14 benign(0.071) TCGA-NH-A5IV-01 4 123533849 123533849 A C IL21 3'UTR 0.33 TCGA-NH-A5IV-01 4 1244948 1244948 T A CTBP1 5'Flank 0.20 TCGA-NH-A5IV-01 4 1246073 1246073 T - CTBP1 5'Flank 0.29 TCGA-NH-A5IV-01 4 125591169 125591169 T - ANKRD50 Frame_Shift_Del p.N1088Mfs*6 0.28 TCGA-NH-A5IV-01 4 126367471 126367471 C T FAT4 Missense_Mutation p.S2406F 0.31 possibly_damaging(0.857) TCGA-NH-A5IV-01 4 126369726 126369727 - G FAT4 Frame_Shift_Ins p.A2521Sfs*37 0.09 TCGA-NH-A5IV-01 4 126373802 126373802 T A FAT4 Nonsense_Mutation p.C3877* 0.40 TCGA-NH-A5IV-01 4 1316175 1316175 G C MAEA Missense_Mutation p.V155L 0.39 deleterious(0.04) benign(0.023) TCGA-NH-A5IV-01 4 1343439 1343439 C T UVSSA Missense_Mutation p.R76W 0.40 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 4 13597525 13597525 G A BOD1L1 Missense_Mutation p.A2688V 0.36 benign(0.002) TCGA-NH-A5IV-01 4 141888966 141888966 C T RNF150 Silent p.L182L 0.36 TCGA-NH-A5IV-01 4 143352337 143352337 C T INPP4B Missense_Mutation p.D26N 0.40 tolerated_low_confidence(0.59) benign(0.002) TCGA-NH-A5IV-01 4 144480910 144480910 C T SMARCA5 3'Flank 0.29 TCGA-NH-A5IV-01 4 145628239 145628239 A - HHIP Frame_Shift_Del p.N330Ifs*7 0.28 TCGA-NH-A5IV-01 4 146575228 146575228 G T MMAA Missense_Mutation p.R301M 0.49 tolerated(0.06) possibly_damaging(0.714) TCGA-NH-A5IV-01 4 147177532 147177532 A - SLC10A7 3'UTR 0.34 TCGA-NH-A5IV-01 4 147560532 147560532 C T POU4F2 Silent p.G80G 0.34 TCGA-NH-A5IV-01 4 151231494 151231494 A - LRBA Frame_Shift_Del p.L2590* 0.30 TCGA-NH-A5IV-01 4 151356761 151356761 G A LRBA Missense_Mutation p.R2352C 0.32 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 4 151827558 151827558 C T LRBA Splice_Site p.X498_splice 0.15 TCGA-NH-A5IV-01 4 152679951 152679951 A - PET112 Frame_Shift_Del p.F100Lfs*17 0.31 TCGA-NH-A5IV-01 4 154197243 154197243 T C TRIM2 Silent p.A138A 0.48 TCGA-NH-A5IV-01 4 155995 155995 A - ZNF718 RNA 0.21 TCGA-NH-A5IV-01 4 157684263 157684263 G A PDGFC Silent p.C339C 0.30 TCGA-NH-A5IV-01 4 158057753 158057753 T - GLRB Frame_Shift_Del p.F145Lfs*12 0.09 TCGA-NH-A5IV-01 4 158254092 158254092 C A GRIA2 Missense_Mutation p.A335E 0.39 tolerated(0.21) possibly_damaging(0.895) TCGA-NH-A5IV-01 4 158257707 158257707 T - GRIA2 Frame_Shift_Del p.F552Lfs*8 0.27 TCGA-NH-A5IV-01 4 159627492 159627492 A G ETFDH Silent p.R479R 0.40 TCGA-NH-A5IV-01 4 160274766 160274766 C A RAPGEF2 Missense_Mutation p.R1246S 0.15 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-NH-A5IV-01 4 162421254 162421254 A - FSTL5 Frame_Shift_Del p.Y458Mfs*7 0.09 TCGA-NH-A5IV-01 4 164048114 164048114 T - NAF1 3'Flank 0.30 TCGA-NH-A5IV-01 4 164050206 164050206 G T NAF1 Missense_Mutation p.P443Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-NH-A5IV-01 4 164087515 164087515 C T NAF1 Missense_Mutation p.S122N 0.33 tolerated_low_confidence(0.08) probably_damaging(0.932) TCGA-NH-A5IV-01 4 165962498 165962498 A G TRIM60 Missense_Mutation p.D425G 0.44 deleterious(0) benign(0.307) TCGA-NH-A5IV-01 4 166795003 166795003 C A TLL1 5'UTR 0.14 TCGA-NH-A5IV-01 4 168155232 168155232 C - SPOCK3 Frame_Shift_Del p.R32Gfs*34 0.34 TCGA-NH-A5IV-01 4 169922982 169922982 T - CBR4 Intron 0.97 TCGA-NH-A5IV-01 4 170190214 170190214 G T SH3RF1 Silent p.P50P 0.35 TCGA-NH-A5IV-01 4 170912578 170912578 G A MFAP3L Missense_Mutation p.A394V 0.13 tolerated_low_confidence(0.23) benign(0.015) TCGA-NH-A5IV-01 4 173804032 173804032 G T GALNTL6 Nonsense_Mutation p.G339* 0.06 TCGA-NH-A5IV-01 4 174450364 174450366 GCG - HAND2 In_Frame_Del p.A32del 0.21 TCGA-NH-A5IV-01 4 17528582 17528582 C T CLRN2 Silent p.C192C 0.32 TCGA-NH-A5IV-01 4 17579016 17579016 C A LAP3 5'UTR 0.49 TCGA-NH-A5IV-01 4 175898265 175898265 G A ADAM29 Missense_Mutation p.R530H 0.44 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 4 175898509 175898509 C T ADAM29 Silent p.I611I 0.22 TCGA-NH-A5IV-01 4 17609126 17609126 G A LAP3 Missense_Mutation p.V492I 0.15 tolerated(0.3) benign(0.018) TCGA-NH-A5IV-01 4 176733507 176733507 C T GPM6A Intron 0.47 TCGA-NH-A5IV-01 4 177713475 177713475 A G VEGFC 5'UTR 0.11 TCGA-NH-A5IV-01 4 1801128 1801128 G A FGFR3 Missense_Mutation p.R86H 0.38 tolerated(0.05) probably_damaging(0.961) TCGA-NH-A5IV-01 4 183673127 183673127 C T TENM3 Silent p.D1268D 0.42 TCGA-NH-A5IV-01 4 185310129 185310129 G A IRF2 Missense_Mutation p.A278V 0.45 tolerated(0.12) benign(0.008) TCGA-NH-A5IV-01 4 185580539 185580539 C T PRIMPOL Missense_Mutation p.R76C 0.10 probably_damaging(0.961) TCGA-NH-A5IV-01 4 186515044 186515044 C - SORBS2 Frame_Shift_Del p.E1144Nfs*65 0.28 TCGA-NH-A5IV-01 4 187131794 187131794 A G CYP4V2 Silent p.%3D 0.38 TCGA-NH-A5IV-01 4 187628840 187628840 C T FAT1 Silent p.P714P 0.08 TCGA-NH-A5IV-01 4 189012953 189012953 C T TRIML2 Silent p.A246A 0.21 TCGA-NH-A5IV-01 4 1988027 1988027 G A NELFA Missense_Mutation p.T257M 0.38 deleterious(0.01) benign(0.041) TCGA-NH-A5IV-01 4 1991460 1991460 C T NELFA Silent p.T184T 0.40 TCGA-NH-A5IV-01 4 1991521 1991521 G A NELFA Missense_Mutation p.A164V 0.40 tolerated(1) benign(0.006) TCGA-NH-A5IV-01 4 25678340 25678340 C T SLC34A2 Missense_Mutation p.S681L 0.31 tolerated_low_confidence(0.37) benign(0.001) TCGA-NH-A5IV-01 4 2661544 2661544 C A FAM193A Missense_Mutation p.A212D 0.16 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 4 2932997 2932997 G A MFSD10 Silent p.A373A 0.40 TCGA-NH-A5IV-01 4 3210608 3210608 C T HTT Silent p.H2087H 0.41 TCGA-NH-A5IV-01 4 3240691 3240691 G A HTT Silent p.P3067P 0.25 TCGA-NH-A5IV-01 4 337655 337655 A G ZNF141 Missense_Mutation p.R30G 0.40 deleterious(0) possibly_damaging(0.849) TCGA-NH-A5IV-01 4 3427241 3427241 C T RGS12 Silent p.D1095D 0.43 TCGA-NH-A5IV-01 4 36160361 36160362 - T ARAP2 Frame_Shift_Ins p.L915Tfs*3 0.30 TCGA-NH-A5IV-01 4 36292025 36292025 C - DTHD1 Frame_Shift_Del p.Q183Kfs*16 0.31 TCGA-NH-A5IV-01 4 3769925 3769925 C - ADRA2C 3'UTR 0.27 TCGA-NH-A5IV-01 4 38799984 38799984 G A TLR1 Silent p.L157L 0.41 TCGA-NH-A5IV-01 4 39501657 39501657 A C UGDH 3'UTR 0.28 TCGA-NH-A5IV-01 4 40245153 40245153 C T RHOH Silent p.G49G 0.43 TCGA-NH-A5IV-01 4 41747718 41747718 G A PHOX2B 3'UTR 0.31 TCGA-NH-A5IV-01 4 41747786 41747786 C T PHOX2B 3'UTR 0.35 TCGA-NH-A5IV-01 4 41984544 41984544 C T DCAF4L1 Silent p.S245S 0.44 TCGA-NH-A5IV-01 4 4228444 4228444 G A OTOP1 Missense_Mutation p.R50C 0.35 tolerated_low_confidence(0.09) benign(0.002) TCGA-NH-A5IV-01 4 4276163 4276163 G A LYAR Missense_Mutation p.R255C 0.13 deleterious(0.02) benign(0.443) TCGA-NH-A5IV-01 4 47695012 47695012 G A CORIN Silent p.D296D 0.42 TCGA-NH-A5IV-01 4 48136243 48136243 A G TXK 5'UTR 0.44 TCGA-NH-A5IV-01 4 48512084 48512084 C T FRYL Missense_Mutation p.A2796T 0.44 tolerated(0.32) probably_damaging(0.996) TCGA-NH-A5IV-01 4 515036 515036 A G PIGG Missense_Mutation p.M436V 0.38 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 4 52862055 52862055 G A LRRC66 Missense_Mutation p.A378V 0.04 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 4 52890074 52890074 A - SGCB 3'UTR 0.28 TCGA-NH-A5IV-01 4 54968094 54968094 G T GSX2 3'UTR 0.07 TCGA-NH-A5IV-01 4 55948155 55948155 C T KDR Silent p.L1272L 0.05 TCGA-NH-A5IV-01 4 5721018 5721018 C T EVC Missense_Mutation p.A73V 0.07 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 4 57796750 57796750 A - REST Frame_Shift_Del p.S578Vfs*7 0.25 TCGA-NH-A5IV-01 4 57860953 57860953 T C POLR2B Missense_Mutation p.L166S 0.28 tolerated(0.33) possibly_damaging(0.639) TCGA-NH-A5IV-01 4 59340 59340 G T ZNF595 Missense_Mutation p.R7S 0.05 deleterious_low_confidence(0.02) benign(0.392) TCGA-NH-A5IV-01 4 62758659 62758659 G A LPHN3 Missense_Mutation p.C521Y 0.16 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 4 62800639 62800639 C A LPHN3 Missense_Mutation p.R664S 0.16 deleterious(0.02) possibly_damaging(0.546) TCGA-NH-A5IV-01 4 6324960 6324960 C T PPP2R2C 3'UTR 0.10 TCGA-NH-A5IV-01 4 6577074 6577074 A G MAN2B2 Missense_Mutation p.Q46R 0.06 deleterious(0.04) benign(0.364) TCGA-NH-A5IV-01 4 6612829 6612829 G A MAN2B2 Missense_Mutation p.R796Q 0.42 deleterious(0.05) possibly_damaging(0.864) TCGA-NH-A5IV-01 4 71588355 71588355 C T RUFY3 Missense_Mutation p.A22V 0.47 tolerated(0.16) probably_damaging(0.998) TCGA-NH-A5IV-01 4 72994385 72994385 T C NPFFR2 Missense_Mutation p.L128P 0.09 tolerated(0.06) benign(0.01) TCGA-NH-A5IV-01 4 74313372 74313372 A - AFP Frame_Shift_Del p.N348Ifs*22 0.26 TCGA-NH-A5IV-01 4 76846935 76846935 C T NAAA Missense_Mutation p.A207T 0.13 deleterious(0.04) benign(0.225) TCGA-NH-A5IV-01 4 76898902 76898902 C T SDAD1 Missense_Mutation p.C101Y 0.15 deleterious(0) probably_damaging(0.979) TCGA-NH-A5IV-01 4 77662880 77662880 G A SHROOM3 Missense_Mutation p.R1185H 0.53 tolerated(0.05) benign(0.01) TCGA-NH-A5IV-01 4 786363 786363 C - CPLX1 Frame_Shift_Del p.G22Vfs*73 0.30 TCGA-NH-A5IV-01 4 79391190 79391190 C T FRAS1 Missense_Mutation p.T2439M 0.29 benign(0.302) TCGA-NH-A5IV-01 4 79832317 79832317 G A BMP2K Silent p.Q872Q 0.43 TCGA-NH-A5IV-01 4 8229230 8229230 G A SH3TC1 Silent p.V603V 0.46 TCGA-NH-A5IV-01 4 82377645 82377645 T C RASGEF1B Intron 0.42 TCGA-NH-A5IV-01 4 860307 860307 G A GAK Missense_Mutation p.P963L 0.30 deleterious(0.03) benign(0.165) TCGA-NH-A5IV-01 4 88898097 88898097 T C SPP1 Missense_Mutation p.I17T 0.43 deleterious(0.01) benign(0.007) TCGA-NH-A5IV-01 4 89329696 89329696 C A HERC6 Missense_Mutation p.S432Y 0.42 tolerated(0.3) benign(0.372) TCGA-NH-A5IV-01 4 90171107 90171107 G C GPRIN3 Missense_Mutation p.A52G 0.37 tolerated(0.12) benign(0.435) TCGA-NH-A5IV-01 4 90816559 90816559 C T MMRN1 Missense_Mutation p.A146V 0.37 tolerated(0.08) benign(0.017) TCGA-NH-A5IV-01 4 91230116 91230116 G A CCSER1 Silent p.S227S 0.42 TCGA-NH-A5IV-01 4 95578634 95578634 C A PDLIM5 Silent p.A536A 0.40 TCGA-NH-A5IV-01 4 9784268 9784268 G T DRD5 Missense_Mutation p.E205D 0.37 tolerated(0.13) benign(0.006) TCGA-NH-A5IV-01 4 9785349 9785349 G C DRD5 3'UTR 0.21 TCGA-NH-A5IV-01 5 101735275 101735275 C A SLCO6A1 Missense_Mutation p.V600F 0.37 deleterious(0.05) benign(0.014) TCGA-NH-A5IV-01 5 10236703 10236703 A G FAM173B Missense_Mutation p.F111L 0.09 tolerated(0.1) possibly_damaging(0.521) TCGA-NH-A5IV-01 5 102442541 102442541 T - GIN1 Frame_Shift_Del p.K71Rfs*4 0.29 TCGA-NH-A5IV-01 5 10402185 10402185 T - MARCH6 Frame_Shift_Del p.F330Lfs*4 0.27 TCGA-NH-A5IV-01 5 10681267 10681267 G A DAP Silent p.F70F 0.07 TCGA-NH-A5IV-01 5 111643154 111643154 C T EPB41L4A Missense_Mutation p.V45I 0.45 deleterious(0.04) benign(0.196) TCGA-NH-A5IV-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.45 TCGA-NH-A5IV-01 5 112174991 112174991 A G APC Missense_Mutation p.S1234G 0.38 benign(0.002) TCGA-NH-A5IV-01 5 11384949 11384949 G - CTNND2 Frame_Shift_Del p.T336Pfs*14 0.28 TCGA-NH-A5IV-01 5 114462138 114462138 G T TRIM36 3'UTR 0.60 TCGA-NH-A5IV-01 5 114951736 114951736 A - TMED7 3'UTR 0.22 TCGA-NH-A5IV-01 5 118525441 118525441 C T DMXL1 Missense_Mutation p.R2392C 0.35 deleterious(0.01) benign(0.001) TCGA-NH-A5IV-01 5 121413605 121413605 C T LOX Missense_Mutation p.A26T 0.22 tolerated(0.61) benign(0.001) TCGA-NH-A5IV-01 5 122734895 122734895 C T CEP120 Missense_Mutation p.A183T 0.09 tolerated(0.07) benign(0.349) TCGA-NH-A5IV-01 5 123980247 123980247 C T ZNF608 Silent p.P1271P 0.42 TCGA-NH-A5IV-01 5 125939711 125939712 - A PHAX Frame_Shift_Ins p.M185Nfs*32 0.36 TCGA-NH-A5IV-01 5 126755872 126755872 C T MEGF10 Silent p.R521R 0.45 TCGA-NH-A5IV-01 5 127640741 127640741 C T FBN2 Missense_Mutation p.C1903Y 0.38 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 5 129521508 129521508 T - CHSY3 3'UTR 0.23 TCGA-NH-A5IV-01 5 130797438 130797438 G A RAPGEF6 Nonsense_Mutation p.R942* 0.38 TCGA-NH-A5IV-01 5 132097148 132097148 A G SEPT8 Splice_Site p.X321_splice 0.47 TCGA-NH-A5IV-01 5 132222086 132222086 G A AFF4 Silent p.C1005C 0.39 TCGA-NH-A5IV-01 5 132232626 132232627 - T AFF4 Frame_Shift_Ins p.Q566Tfs*6 0.30 TCGA-NH-A5IV-01 5 133478510 133478510 C T TCF7 Missense_Mutation p.A285V 0.08 deleterious(0) probably_damaging(0.971) TCGA-NH-A5IV-01 5 134194394 134194394 T - C5orf24 3'UTR 0.29 TCGA-NH-A5IV-01 5 134303539 134303539 C A PCBD2 3'UTR 0.25 TCGA-NH-A5IV-01 5 134871572 134871572 G A NEUROG1 5'UTR 0.14 TCGA-NH-A5IV-01 5 135283071 135283071 C T LECT2 Silent p.S135S 0.38 TCGA-NH-A5IV-01 5 135692515 135692515 G A TRPC7 Silent p.G187G 0.44 TCGA-NH-A5IV-01 5 13692125 13692125 G A DNAH5 Missense_Mutation p.R4615C 0.39 possibly_damaging(0.898) TCGA-NH-A5IV-01 5 137260793 137260793 C T PKD2L2 Missense_Mutation p.T539I 0.03 tolerated(0.28) benign(0.001) TCGA-NH-A5IV-01 5 137621238 137621238 G A CDC25C 3'UTR 0.29 TCGA-NH-A5IV-01 5 13810297 13810297 C - DNAH5 Frame_Shift_Del p.A2494Rfs*77 0.26 TCGA-NH-A5IV-01 5 139060240 139060240 C T CXXC5 Silent p.A44A 0.35 TCGA-NH-A5IV-01 5 13919419 13919419 C T DNAH5 Missense_Mutation p.V281I 0.05 benign(0.003) TCGA-NH-A5IV-01 5 139494754 139494754 C A PURA 3'UTR 0.34 TCGA-NH-A5IV-01 5 139941311 139941311 G T APBB3 Intron 0.17 TCGA-NH-A5IV-01 5 140019102 140019102 C G TMCO6 5'UTR 0.07 TCGA-NH-A5IV-01 5 140021294 140021295 - GA TMCO6 Frame_Shift_Ins p.G85Rfs*34 0.36 TCGA-NH-A5IV-01 5 140167576 140167576 G A PCDHA1 Silent p.A567A 0.42 TCGA-NH-A5IV-01 5 140188381 140188381 G A PCDHA4 Missense_Mutation p.A537T 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-NH-A5IV-01 5 140215653 140215653 C T PCDHA7 Missense_Mutation p.A562V 0.44 deleterious_low_confidence(0.04) benign(0.152) TCGA-NH-A5IV-01 5 140229692 140229692 C T PCDHA9 Missense_Mutation p.R538C 0.44 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-NH-A5IV-01 5 140237319 140237319 C T PCDHA10 Silent p.P562P 0.40 TCGA-NH-A5IV-01 5 140248790 140248790 C T PCDHA11 Silent p.S34S 0.53 TCGA-NH-A5IV-01 5 140249077 140249077 C T PCDHA11 Missense_Mutation p.P130L 0.26 deleterious_low_confidence(0.01) benign(0.092) TCGA-NH-A5IV-01 5 140263647 140263647 C T PCDHA13 Silent p.D598D 0.44 TCGA-NH-A5IV-01 5 140309110 140309110 T - PCDHAC1 Intron 0.31 TCGA-NH-A5IV-01 5 140346519 140346519 G A PCDHAC2 Silent p.A56A 0.36 TCGA-NH-A5IV-01 5 140432661 140432661 G A PCDHB1 Missense_Mutation p.D536N 0.32 deleterious(0.02) benign(0.198) TCGA-NH-A5IV-01 5 140503222 140503222 G A PCDHB4 Missense_Mutation p.V548M 0.31 deleterious(0.01) possibly_damaging(0.805) TCGA-NH-A5IV-01 5 140531569 140531569 G A PCDHB6 Silent p.A577A 0.50 TCGA-NH-A5IV-01 5 140532487 140532487 C A PCDHB6 3'UTR 0.39 TCGA-NH-A5IV-01 5 140574732 140574732 A G PCDHB10 3'UTR 0.43 TCGA-NH-A5IV-01 5 140682956 140682956 A G SLC25A2 Silent p.G159G 0.40 TCGA-NH-A5IV-01 5 140753721 140753721 G - PCDHGA6 Frame_Shift_Del p.A26Pfs*20 0.29 TCGA-NH-A5IV-01 5 140801469 140801469 C T PCDHGA11 Silent p.G225G 0.41 TCGA-NH-A5IV-01 5 140802884 140802884 C T PCDHGA11 Missense_Mutation p.A697V 0.44 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-NH-A5IV-01 5 140870731 140870731 C T PCDHGC5 Nonsense_Mutation p.Q642* 0.23 TCGA-NH-A5IV-01 5 140890708 140890710 AAG - PCDHGB6 In_Frame_Del p.K923del 0.29 TCGA-NH-A5IV-01 5 140905627 140905628 CT - DIAPH1 Frame_Shift_Del p.E1184Afs*11 0.33 TCGA-NH-A5IV-01 5 140953309 140953309 G - DIAPH1 Frame_Shift_Del p.P703Hfs*65 0.36 TCGA-NH-A5IV-01 5 141243273 141243273 G A PCDH1 Missense_Mutation p.R875C 0.50 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 5 141694459 141694459 G - SPRY4 Frame_Shift_Del p.P95Qfs*28 0.30 TCGA-NH-A5IV-01 5 145883478 145883478 G A TCERG1 Missense_Mutation p.R880H 0.12 tolerated(0.11) unknown(0) TCGA-NH-A5IV-01 5 146077691 146077691 T C PPP2R2B Missense_Mutation p.H65R 0.38 tolerated(0.25) benign(0) TCGA-NH-A5IV-01 5 147492434 147492434 G A SPINK5 Silent p.Q608Q 0.42 TCGA-NH-A5IV-01 5 149003590 149003590 G A ARHGEF37 Missense_Mutation p.V451I 0.32 tolerated(0.27) benign(0.004) TCGA-NH-A5IV-01 5 149375794 149375794 T C TIGD6 Missense_Mutation p.T40A 0.39 tolerated(0.41) benign(0.01) TCGA-NH-A5IV-01 5 149513304 149513304 G A PDGFRB Missense_Mutation p.P260L 0.50 tolerated(0.25) benign(0.041) TCGA-NH-A5IV-01 5 149901054 149901054 C T NDST1 Missense_Mutation p.R80C 0.34 deleterious(0) probably_damaging(0.988) TCGA-NH-A5IV-01 5 149907475 149907475 A G NDST1 Missense_Mutation p.Y208C 0.46 tolerated(0.12) probably_damaging(0.951) TCGA-NH-A5IV-01 5 150278095 150278095 C T ZNF300 Missense_Mutation p.V29M 0.37 deleterious(0) possibly_damaging(0.884) TCGA-NH-A5IV-01 5 150885378 150885378 G - FAT2 Frame_Shift_Del p.C4267Vfs*129 0.33 TCGA-NH-A5IV-01 5 150946468 150946468 T C FAT2 Silent p.V675V 0.36 TCGA-NH-A5IV-01 5 15500590 15500590 G - FBXL7 5'UTR 0.24 TCGA-NH-A5IV-01 5 155771633 155771633 A G SGCD Missense_Mutation p.I46M 0.35 tolerated(0.48) possibly_damaging(0.888) TCGA-NH-A5IV-01 5 156565718 156565718 A - MED7 3'UTR 0.23 TCGA-NH-A5IV-01 5 15936815 15936815 C T FBXL7 Silent p.S332S 0.33 TCGA-NH-A5IV-01 5 15936846 15936846 C T FBXL7 Missense_Mutation p.R343W 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A5IV-01 5 15937113 15937113 C T FBXL7 Missense_Mutation p.R432W 0.47 deleterious(0) probably_damaging(0.965) TCGA-NH-A5IV-01 5 159546066 159546066 C T PWWP2A Silent p.G110G 0.36 TCGA-NH-A5IV-01 5 159781965 159781965 C T C1QTNF2 Silent p.L63L 0.36 TCGA-NH-A5IV-01 5 159821929 159821929 G A C5orf54 Missense_Mutation p.A190V 0.34 tolerated(1) benign(0.028) TCGA-NH-A5IV-01 5 159849713 159849713 C T PTTG1 Intron 0.34 TCGA-NH-A5IV-01 5 159992382 159992384 GAA - ATP10B 3'UTR 0.36 TCGA-NH-A5IV-01 5 16067799 16067799 G A MARCH11 Silent p.I330I 0.41 TCGA-NH-A5IV-01 5 167489118 167489118 C T TENM2 Missense_Mutation p.R455W 0.34 deleterious(0) possibly_damaging(0.677) TCGA-NH-A5IV-01 5 167671621 167671621 G A TENM2 Missense_Mutation p.R1906H 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-NH-A5IV-01 5 167719269 167719269 C T WWC1 Missense_Mutation p.R38W 0.13 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 5 167887733 167887733 G A WWC1 Missense_Mutation p.V968I 0.39 deleterious(0.02) benign(0.137) TCGA-NH-A5IV-01 5 170308882 170308883 GA - RANBP17 Frame_Shift_Del p.E80Afs*33 0.21 TCGA-NH-A5IV-01 5 172578619 172578619 T A BNIP1 Missense_Mutation p.F76L 0.38 tolerated_low_confidence(0.86) benign(0) TCGA-NH-A5IV-01 5 175774752 175774752 G A KIAA1191 Missense_Mutation p.R257C 0.41 deleterious(0.03) benign(0.014) TCGA-NH-A5IV-01 5 175933954 175933954 T - FAF2 3'UTR 0.14 TCGA-NH-A5IV-01 5 175959047 175959047 T G RNF44 Silent p.P85P 0.37 TCGA-NH-A5IV-01 5 176316669 176316669 G T HK3 Missense_Mutation p.P236Q 0.28 tolerated(0.74) probably_damaging(0.918) TCGA-NH-A5IV-01 5 176639016 176639016 C T NSD1 Missense_Mutation p.H1206Y 0.12 tolerated_low_confidence(0.59) benign(0.05) TCGA-NH-A5IV-01 5 176731730 176731730 C T PRELID1 Missense_Mutation p.A66V 0.41 deleterious(0.01) possibly_damaging(0.573) TCGA-NH-A5IV-01 5 176799117 176799117 G A RGS14 3'UTR 0.50 TCGA-NH-A5IV-01 5 178505732 178505732 T - ZNF354C Frame_Shift_Del p.F101Lfs*2 0.10 TCGA-NH-A5IV-01 5 179041795 179041795 A G HNRNPH1 3'UTR 0.24 TCGA-NH-A5IV-01 5 179296771 179296771 G - TBC1D9B Frame_Shift_Del p.P930Qfs*3 0.11 TCGA-NH-A5IV-01 5 180058748 180058748 G - FLT4 Frame_Shift_Del p.P30Rfs*3 0.26 TCGA-NH-A5IV-01 5 180219515 180219515 C T MGAT1 Missense_Mutation p.A153T 0.14 benign(0.016) TCGA-NH-A5IV-01 5 180335696 180335696 C T BTNL8 Missense_Mutation p.R54W 0.33 deleterious(0) benign(0.364) TCGA-NH-A5IV-01 5 180424295 180424295 C - BTNL3 Frame_Shift_Del p.Q162Sfs*35 0.13 TCGA-NH-A5IV-01 5 180669175 180669175 T C GNB2L1 Missense_Mutation p.T94A 0.40 tolerated(0.17) benign(0) TCGA-NH-A5IV-01 5 23527316 23527316 C T PRDM9 Missense_Mutation p.L707F 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-NH-A5IV-01 5 24492973 24492973 A - CDH10 Frame_Shift_Del p.F526Sfs*3 0.41 TCGA-NH-A5IV-01 5 24537709 24537709 A - CDH10 Frame_Shift_Del p.F102Lfs*36 0.26 TCGA-NH-A5IV-01 5 26906184 26906184 T C CDH9 Missense_Mutation p.Y232C 0.42 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 5 32090503 32090503 C T PDZD2 Nonsense_Mutation p.R2317* 0.34 TCGA-NH-A5IV-01 5 32417755 32417755 G A ZFR Missense_Mutation p.T188I 0.16 tolerated(0.08) possibly_damaging(0.884) TCGA-NH-A5IV-01 5 33938152 33938152 C T RXFP3 Missense_Mutation p.P436L 0.41 tolerated(0.06) possibly_damaging(0.712) TCGA-NH-A5IV-01 5 34830896 34830896 C A RAI14 3'UTR 0.13 TCGA-NH-A5IV-01 5 35771754 35771754 A G SPEF2 Missense_Mutation p.E1282G 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-NH-A5IV-01 5 37014836 37014836 G A NIPBL Missense_Mutation p.A1538T 0.35 deleterious(0) probably_damaging(0.947) TCGA-NH-A5IV-01 5 38904524 38904524 G A OSMR Missense_Mutation p.A402T 0.35 tolerated(0.53) benign(0.038) TCGA-NH-A5IV-01 5 38923329 38923329 A - OSMR Frame_Shift_Del p.T617Qfs*20 0.11 TCGA-NH-A5IV-01 5 39315917 39315917 T - C9 Frame_Shift_Del p.N277Mfs*21 0.27 TCGA-NH-A5IV-01 5 40950020 40950020 G A C7 Missense_Mutation p.E333K 0.08 tolerated(0.14) benign(0.014) TCGA-NH-A5IV-01 5 41176593 41176593 C A C6 Missense_Mutation p.E384D 0.05 deleterious(0.03) benign(0.29) TCGA-NH-A5IV-01 5 5140791 5140791 C T ADAMTS16 Silent p.A29A 0.38 TCGA-NH-A5IV-01 5 5303721 5303721 G A ADAMTS16 Missense_Mutation p.A1010T 0.46 tolerated(0.69) benign(0.004) TCGA-NH-A5IV-01 5 54527463 54527463 C - CCNO Frame_Shift_Del p.V265Wfs*4 0.14 TCGA-NH-A5IV-01 5 54618228 54618228 G A SKIV2L2 Missense_Mutation p.G70S 0.39 tolerated(0.3) benign(0) TCGA-NH-A5IV-01 5 54696119 54696119 G C SKIV2L2 Missense_Mutation p.G784A 0.15 tolerated(0.15) possibly_damaging(0.542) TCGA-NH-A5IV-01 5 54931470 54931470 T C SLC38A9 Missense_Mutation p.I395V 0.39 tolerated(0.21) benign(0.024) TCGA-NH-A5IV-01 5 55110911 55110911 G A DDX4 Missense_Mutation p.R633H 0.37 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 5 56558567 56558567 C T GPBP1 Silent p.D477D 0.34 TCGA-NH-A5IV-01 5 58021942 58021942 A G RAB3C Silent p.Q122Q 0.11 TCGA-NH-A5IV-01 5 60821679 60821679 C T ZSWIM6 Silent p.C522C 0.51 TCGA-NH-A5IV-01 5 60827396 60827396 A G ZSWIM6 Missense_Mutation p.I697V 0.42 tolerated(0.13) benign(0.087) TCGA-NH-A5IV-01 5 61778953 61778953 C T IPO11 Missense_Mutation p.P325L 0.35 deleterious(0) probably_damaging(0.959) TCGA-NH-A5IV-01 5 64492957 64492957 A G ADAMTS6 Missense_Mutation p.V866A 0.44 tolerated(0.53) benign(0.008) TCGA-NH-A5IV-01 5 64748574 64748574 C T ADAMTS6 Missense_Mutation p.R268H 0.42 deleterious(0.01) probably_damaging(0.981) TCGA-NH-A5IV-01 5 65290613 65290613 G A ERBB2IP Silent p.L76L 0.34 TCGA-NH-A5IV-01 5 65465923 65465923 G A SREK1 Missense_Mutation p.R349H 0.40 deleterious(0.04) unknown(0) TCGA-NH-A5IV-01 5 66459179 66459179 C - MAST4 Frame_Shift_Del p.P1392Rfs*37 0.32 TCGA-NH-A5IV-01 5 67590501 67590501 A G PIK3R1 Missense_Mutation p.I521M 0.12 tolerated(0.31) probably_damaging(0.991) TCGA-NH-A5IV-01 5 68647813 68647813 C T RP11-1113N2.4 3'Flank 0.21 TCGA-NH-A5IV-01 5 68684876 68684876 A G RAD17 Missense_Mutation p.T315A 0.44 tolerated(0.5) benign(0.002) TCGA-NH-A5IV-01 5 69716103 69716103 A - GTF2H2B RNA 0.12 TCGA-NH-A5IV-01 5 71739997 71739997 G A ZNF366 Silent p.D607D 0.44 TCGA-NH-A5IV-01 5 74698851 74698851 C A COL4A3BP Missense_Mutation p.E449D 0.37 deleterious(0.04) probably_damaging(0.991) TCGA-NH-A5IV-01 5 74892630 74892630 A G POLK Silent p.V704V 0.18 TCGA-NH-A5IV-01 5 75587134 75587134 G A SV2C Missense_Mutation p.R409Q 0.43 deleterious(0.05) possibly_damaging(0.638) TCGA-NH-A5IV-01 5 7802439 7802440 - T ADCY2 Frame_Shift_Ins p.R914Sfs*9 0.29 TCGA-NH-A5IV-01 5 78610467 78610467 C - JMY Frame_Shift_Del p.P819Lfs*69 0.24 TCGA-NH-A5IV-01 5 79617082 79617082 C A SPZ1 Missense_Mutation p.Q350K 0.39 tolerated(0.82) benign(0.256) TCGA-NH-A5IV-01 5 79837704 79837704 A G FAM151B 3'UTR 0.06 TCGA-NH-A5IV-01 5 86686785 86686785 A - RASA1 3'Flank 0.15 TCGA-NH-A5IV-01 5 87494827 87494827 G A TMEM161B Missense_Mutation p.A352V 0.44 deleterious(0.02) benign(0.065) TCGA-NH-A5IV-01 5 87502956 87502956 T C TMEM161B Missense_Mutation p.E163G 0.34 deleterious(0.02) possibly_damaging(0.45) TCGA-NH-A5IV-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.30 TCGA-NH-A5IV-01 5 89756856 89756856 T C MBLAC2 3'UTR 0.48 TCGA-NH-A5IV-01 5 89925202 89925202 C T GPR98 Missense_Mutation p.A562V 0.35 benign(0.006) TCGA-NH-A5IV-01 5 89979636 89979636 G A GPR98 Silent p.T1966T 0.38 TCGA-NH-A5IV-01 5 90072382 90072382 C T GPR98 Silent p.T4172T 0.35 TCGA-NH-A5IV-01 5 90106087 90106087 G A GPR98 Missense_Mutation p.V5004I 0.37 benign(0.002) TCGA-NH-A5IV-01 5 90670996 90670996 C A ARRDC3 Splice_Site p.X205_splice 0.38 TCGA-NH-A5IV-01 5 93999553 93999553 G A ANKRD32 Silent p.L436L 0.15 TCGA-NH-A5IV-01 5 94749823 94749823 G A FAM81B Missense_Mutation p.A156T 0.14 deleterious(0.02) possibly_damaging(0.901) TCGA-NH-A5IV-01 5 95249514 95249514 G A ELL2 Nonsense_Mutation p.R148* 0.36 TCGA-NH-A5IV-01 5 95297482 95297482 G A ELL2 5'UTR 0.36 TCGA-NH-A5IV-01 5 96098119 96098119 G A ERAP1 3'UTR 0.44 TCGA-NH-A5IV-01 5 96224904 96224905 - C ERAP2 Frame_Shift_Ins p.D291Rfs*18 0.28 TCGA-NH-A5IV-01 5 98215254 98215254 A G CHD1 Splice_Site p.X1079_splice 0.10 TCGA-NH-A5IV-01 6 100988095 100988095 G A ASCC3 Missense_Mutation p.P1907S 0.39 tolerated(1) benign(0.006) TCGA-NH-A5IV-01 6 105609833 105609833 G A POPDC3 5'UTR 0.36 TCGA-NH-A5IV-01 6 105824106 105824106 A G PREP Silent p.G93G 0.39 TCGA-NH-A5IV-01 6 107100424 107100424 A C QRSL1 Silent p.A272A 0.12 TCGA-NH-A5IV-01 6 108093500 108093500 C T SCML4 Missense_Mutation p.R11Q 0.42 deleterious(0) probably_damaging(0.942) TCGA-NH-A5IV-01 6 108395792 108395792 G A OSTM1 Silent p.L22L 0.38 TCGA-NH-A5IV-01 6 109477270 109477270 A - CEP57L1 Intron 0.29 TCGA-NH-A5IV-01 6 111345466 111345466 G T RPF2 Missense_Mutation p.R226M 0.14 deleterious(0) probably_damaging(0.995) TCGA-NH-A5IV-01 6 111498518 111498518 C T SLC16A10 Missense_Mutation p.R198C 0.46 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 6 111631223 111631223 C T REV3L Missense_Mutation p.G2959R 0.36 deleterious(0.02) probably_damaging(1) TCGA-NH-A5IV-01 6 111686480 111686480 T C REV3L Silent p.L2247L 0.48 TCGA-NH-A5IV-01 6 111804041 111804041 C T REV3L Silent p.L17L 0.22 TCGA-NH-A5IV-01 6 112454015 112454015 T C LAMA4 Silent p.E1258E 0.08 TCGA-NH-A5IV-01 6 112462610 112462610 G A LAMA4 Silent p.S921S 0.12 TCGA-NH-A5IV-01 6 116756890 116756890 G A DSE Missense_Mutation p.G420E 0.34 deleterious(0) possibly_damaging(0.88) TCGA-NH-A5IV-01 6 116817954 116817954 A - TRAPPC3L 3'UTR 0.41 TCGA-NH-A5IV-01 6 116950758 116950758 A - RSPH4A Frame_Shift_Del p.N566Mfs*18 0.23 TCGA-NH-A5IV-01 6 117718177 117718177 C T ROS1 Missense_Mutation p.G227D 0.35 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 6 117825021 117825021 C T DCBLD1 Silent p.C68C 0.11 TCGA-NH-A5IV-01 6 117864303 117864303 G A DCBLD1 Silent p.T458T 0.38 TCGA-NH-A5IV-01 6 121769232 121769232 G A GJA1 3'UTR 0.34 TCGA-NH-A5IV-01 6 123105135 123105138 CCCT - FABP7 3'UTR 0.29 TCGA-NH-A5IV-01 6 123759216 123759216 T C TRDN Missense_Mutation p.E348G 0.27 deleterious_low_confidence(0) benign(0.242) TCGA-NH-A5IV-01 6 126075668 126075668 A G HEY2 Missense_Mutation p.M102V 0.37 deleterious(0) benign(0.098) TCGA-NH-A5IV-01 6 128134568 128134568 T - THEMIS Frame_Shift_Del p.V407Wfs*2 0.26 TCGA-NH-A5IV-01 6 129714246 129714246 A - LAMA2 Frame_Shift_Del p.N1765Mfs*26 0.29 TCGA-NH-A5IV-01 6 130761753 130761753 T - TMEM200A Frame_Shift_Del p.I66Ffs*2 0.26 TCGA-NH-A5IV-01 6 132047328 132047328 A G ENPP3 Silent p.T647T 0.35 TCGA-NH-A5IV-01 6 132270596 132270596 T C CTGF Silent p.V286V 0.39 TCGA-NH-A5IV-01 6 13273221 13273221 G T TBC1D7 Intron 0.72 TCGA-NH-A5IV-01 6 13287429 13287429 T A TBC1D7 Intron 0.41 TCGA-NH-A5IV-01 6 134212976 134212976 G - TCF21 3'UTR 0.33 TCGA-NH-A5IV-01 6 134582900 134582901 - A SGK1 Intron 0.65 TCGA-NH-A5IV-01 6 135518338 135518338 A - MYB Frame_Shift_Del p.K483Nfs*8 0.22 TCGA-NH-A5IV-01 6 136468605 136468605 C T PDE7B Missense_Mutation p.H95Y 0.17 tolerated(0.42) benign(0.007) TCGA-NH-A5IV-01 6 136709584 136709584 T C MAP7 Missense_Mutation p.N180S 0.16 deleterious(0.03) benign(0.348) TCGA-NH-A5IV-01 6 138584070 138584070 C T KIAA1244 Nonsense_Mutation p.R484* 0.09 TCGA-NH-A5IV-01 6 14131903 14131903 G A CD83 Silent p.S102S 0.43 TCGA-NH-A5IV-01 6 142736940 142736940 C T GPR126 Nonsense_Mutation p.R893* 0.25 TCGA-NH-A5IV-01 6 143810383 143810383 T A PEX3 3'UTR 0.37 TCGA-NH-A5IV-01 6 144224201 144224201 A - ZC2HC1B Frame_Shift_Del p.E173Nfs*29 0.22 TCGA-NH-A5IV-01 6 144878336 144878336 C T UTRN Missense_Mutation p.A2393V 0.14 tolerated(0.3) benign(0.194) TCGA-NH-A5IV-01 6 146351094 146351094 C - GRM1 Frame_Shift_Del p.P149Qfs*11 0.32 TCGA-NH-A5IV-01 6 148865759 148865759 C T SASH1 Silent p.S1051S 0.55 TCGA-NH-A5IV-01 6 148865778 148865778 C - SASH1 Frame_Shift_Del p.W1060Gfs*16 0.23 TCGA-NH-A5IV-01 6 149997815 149997815 G T LATS1 Missense_Mutation p.S884R 0.14 deleterious(0.01) benign(0.009) TCGA-NH-A5IV-01 6 150131899 150131899 T - PCMT1 3'UTR 0.21 TCGA-NH-A5IV-01 6 150570074 150570074 T C PPP1R14C 3'UTR 0.32 TCGA-NH-A5IV-01 6 151672314 151672314 G A AKAP12 Missense_Mutation p.A930T 0.37 tolerated(0.71) benign(0) TCGA-NH-A5IV-01 6 152557321 152557322 - A SYNE1 Frame_Shift_Ins p.G6773Wfs*7 0.30 TCGA-NH-A5IV-01 6 152686156 152686156 T C SYNE1 Splice_Site p.X3325_splice 0.45 TCGA-NH-A5IV-01 6 152763284 152763284 C T SYNE1 Missense_Mutation p.E1312K 0.38 benign(0.094) TCGA-NH-A5IV-01 6 155450636 155450636 G A TIAM2 Silent p.T93T 0.38 TCGA-NH-A5IV-01 6 157522190 157522190 C - ARID1B Frame_Shift_Del p.P1489Lfs*5 0.22 TCGA-NH-A5IV-01 6 157528353 157528353 C T ARID1B Silent p.V2026V 0.44 TCGA-NH-A5IV-01 6 157744559 157744559 C T TMEM242 5'UTR 0.45 TCGA-NH-A5IV-01 6 158049440 158049440 T - ZDHHC14 Frame_Shift_Del p.Y211Ifs*10 0.30 TCGA-NH-A5IV-01 6 158565363 158565364 - A SERAC1 Frame_Shift_Ins p.L193Sfs*16 0.29 TCGA-NH-A5IV-01 6 159146670 159146670 G A SYTL3 Splice_Site p.X285_splice 0.08 TCGA-NH-A5IV-01 6 159655177 159655177 C T FNDC1 Silent p.G1211G 0.16 TCGA-NH-A5IV-01 6 159655426 159655426 G A FNDC1 Silent p.P1294P 0.36 TCGA-NH-A5IV-01 6 160169553 160169553 G T WTAP Intron 0.07 TCGA-NH-A5IV-01 6 160485488 160485488 G - IGF2R Frame_Shift_Del p.D1317Tfs*27 0.48 TCGA-NH-A5IV-01 6 160560819 160560819 G A SLC22A1 Missense_Mutation p.R399H 0.29 deleterious(0.02) possibly_damaging(0.545) TCGA-NH-A5IV-01 6 160958986 160958986 C T LPA Missense_Mutation p.V1915I 0.31 tolerated(0.82) benign(0.008) TCGA-NH-A5IV-01 6 161574423 161574423 G A AGPAT4 Nonsense_Mutation p.R207* 0.43 TCGA-NH-A5IV-01 6 161575077 161575077 G A AGPAT4 Intron 0.46 TCGA-NH-A5IV-01 6 16327973 16327973 G A ATXN1 Missense_Mutation p.T190M 0.37 deleterious(0.01) benign(0.179) TCGA-NH-A5IV-01 6 167549957 167549957 T G CCR6 Missense_Mutation p.M80R 0.39 deleterious(0) probably_damaging(0.978) TCGA-NH-A5IV-01 6 167550111 167550111 C T CCR6 Silent p.C131C 0.36 TCGA-NH-A5IV-01 6 168475956 168475956 G A FRMD1 Silent p.D91D 0.33 TCGA-NH-A5IV-01 6 168708912 168708912 T C DACT2 Missense_Mutation p.R509G 0.44 deleterious(0.02) benign(0.103) TCGA-NH-A5IV-01 6 170105213 170105213 T - C6orf120 3'UTR 0.24 TCGA-NH-A5IV-01 6 170594673 170594674 - C DLL1 Frame_Shift_Ins p.L283Pfs*14 0.35 TCGA-NH-A5IV-01 6 17292047 17292047 C T RBM24 Silent p.H136H 0.29 TCGA-NH-A5IV-01 6 17761052 17761052 G A KIF13A 3'Flank 0.44 TCGA-NH-A5IV-01 6 17788023 17788023 T - KIF13A Frame_Shift_Del p.V1116Sfs*23 0.27 TCGA-NH-A5IV-01 6 18201802 18201802 G A KDM1B Intron 0.41 TCGA-NH-A5IV-01 6 18258250 18258250 A - DEK Frame_Shift_Del p.L98* 0.21 TCGA-NH-A5IV-01 6 18264188 18264188 C - DEK Frame_Shift_Del p.E11Rfs*53 0.25 TCGA-NH-A5IV-01 6 20402550 20402550 T G E2F3 Silent p.A29A 0.46 TCGA-NH-A5IV-01 6 20781397 20781397 G A CDKAL1 Missense_Mutation p.G180D 0.30 tolerated(0.08) benign(0.342) TCGA-NH-A5IV-01 6 2116096 2116096 C T GMDS Missense_Mutation p.G85D 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-NH-A5IV-01 6 21596715 21596715 C - SOX4 3'UTR 0.24 TCGA-NH-A5IV-01 6 24205454 24205454 T - DCDC2 Intron 0.08 TCGA-NH-A5IV-01 6 24781851 24781851 T C GMNN Splice_Site p.X92_splice 0.38 TCGA-NH-A5IV-01 6 25540216 25540216 G A LRRC16A Silent p.A746A 0.45 TCGA-NH-A5IV-01 6 26056203 26056203 T C HIST1H1C Missense_Mutation p.K152E 0.33 tolerated(0.67) unknown(0) TCGA-NH-A5IV-01 6 26108336 26108336 G A HIST1H1T 5'UTR 0.33 TCGA-NH-A5IV-01 6 26184214 26184214 A G HIST1H2BE Missense_Mutation p.N64S 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NH-A5IV-01 6 27101099 27101099 T C HIST1H2AG Silent p.H83H 0.11 TCGA-NH-A5IV-01 6 27419037 27419037 A G ZNF184 3'UTR 0.37 TCGA-NH-A5IV-01 6 27799293 27799293 C T HIST1H4K Missense_Mutation p.G5S 0.20 tolerated_low_confidence(0.08) unknown(0) TCGA-NH-A5IV-01 6 27860878 27860878 G A HIST1H2AM Missense_Mutation p.T17I 0.15 deleterious_low_confidence(0) unknown(0) TCGA-NH-A5IV-01 6 28219600 28219600 G A ZKSCAN4 Silent p.R53R 0.42 TCGA-NH-A5IV-01 6 29055051 29055051 A - OR2B3 5'UTR 0.34 TCGA-NH-A5IV-01 6 29365043 29365043 C T OR12D2 Silent p.N189N 0.35 TCGA-NH-A5IV-01 6 29691154 29691154 C T HLA-F 5'Flank 0.17 TCGA-NH-A5IV-01 6 29713477 29713477 G A Y_RNA 5'Flank 0.30 TCGA-NH-A5IV-01 6 30039324 30039324 G A RNF39 Missense_Mutation p.A276V 0.45 tolerated(0.07) possibly_damaging(0.453) TCGA-NH-A5IV-01 6 30040952 30040952 T - RNF39 Frame_Shift_Del p.M222Cfs*5 0.28 TCGA-NH-A5IV-01 6 30228197 30228197 G A HCG17 Intron 0.34 TCGA-NH-A5IV-01 6 30613844 30613844 G A ATAT1 Missense_Mutation p.G338D 0.12 tolerated(0.07) possibly_damaging(0.74) TCGA-NH-A5IV-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.25 TCGA-NH-A5IV-01 6 30863263 30863263 C T DDR1 Silent p.P532P 0.43 TCGA-NH-A5IV-01 6 30879022 30879022 G A GTF2H4 Missense_Mutation p.M216I 0.29 tolerated(0.32) benign(0.05) TCGA-NH-A5IV-01 6 31079711 31079711 G A C6orf15 Missense_Mutation p.A142V 0.45 tolerated(0.63) possibly_damaging(0.873) TCGA-NH-A5IV-01 6 31323346 31323346 G - HLA-B Frame_Shift_Del p.H215Tfs*11 0.28 TCGA-NH-A5IV-01 6 3153934 3153934 C A TUBB2A 3'UTR 0.54 TCGA-NH-A5IV-01 6 31602728 31602728 C A PRRC2A Missense_Mutation p.P1712T 0.48 unknown(0) TCGA-NH-A5IV-01 6 31692372 31692372 C A C6orf25 Missense_Mutation p.P170H 0.44 deleterious_low_confidence(0.02) benign(0.007) TCGA-NH-A5IV-01 6 31731244 31731244 T C SAPCD1 Missense_Mutation p.L56P 0.55 deleterious(0.02) possibly_damaging(0.823) TCGA-NH-A5IV-01 6 31765562 31765562 C A LSM2 Missense_Mutation p.R87M 0.36 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 6 31867754 31867754 G A ZBTB12 Silent p.A443A 0.50 TCGA-NH-A5IV-01 6 32117474 32117474 C - PRRT1 Frame_Shift_Del p.G195Efs*4 0.27 TCGA-NH-A5IV-01 6 32130676 32130676 G A PPT2 Nonsense_Mutation p.W292* 0.41 TCGA-NH-A5IV-01 6 32159586 32159586 G A GPSM3 Missense_Mutation p.A82V 0.35 deleterious(0.04) probably_damaging(0.983) TCGA-NH-A5IV-01 6 3225945 3225945 G A TUBB2B Silent p.S126S 0.36 TCGA-NH-A5IV-01 6 32410239 32410239 A G HLA-DRA Missense_Mutation p.I33V 0.41 tolerated(0.28) possibly_damaging(0.75) TCGA-NH-A5IV-01 6 32629750 32629750 C T HLA-DQB1 Missense_Mutation p.E219K 0.50 deleterious(0) possibly_damaging(0.599) TCGA-NH-A5IV-01 6 33170158 33170158 A G SLC39A7 Silent p.G251G 0.36 TCGA-NH-A5IV-01 6 33422879 33422879 T C ZBTB9 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) unknown(0) TCGA-NH-A5IV-01 6 33626502 33626502 T C ITPR3 Missense_Mutation p.L142S 0.37 deleterious(0) probably_damaging(0.973) TCGA-NH-A5IV-01 6 33690671 33690671 G A IP6K3 Silent p.H353H 0.44 TCGA-NH-A5IV-01 6 33690953 33690953 T C IP6K3 Silent p.T259T 0.10 TCGA-NH-A5IV-01 6 34256676 34256676 C T NUDT3 Missense_Mutation p.A125T 0.44 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 6 34839369 34839369 C - UHRF1BP1 Frame_Shift_Del p.I1333Sfs*20 0.28 TCGA-NH-A5IV-01 6 35212510 35212510 C T SCUBE3 Missense_Mutation p.R775C 0.31 deleterious(0) probably_damaging(0.93) TCGA-NH-A5IV-01 6 35473889 35473889 C T TULP1 Missense_Mutation p.R297Q 0.20 tolerated(0.35) benign(0) TCGA-NH-A5IV-01 6 35773417 35773417 G T LHFPL5 5'UTR 0.56 TCGA-NH-A5IV-01 6 36452576 36452576 A - KCTD20 Frame_Shift_Del p.N316Tfs*64 0.12 TCGA-NH-A5IV-01 6 36936716 36936716 C T MTCH1 Missense_Mutation p.R361H 0.31 tolerated(0.06) benign(0.017) TCGA-NH-A5IV-01 6 37442368 37442368 G A CMTR1 Silent p.E630E 0.39 TCGA-NH-A5IV-01 6 38821106 38821106 A G DNAH8 Missense_Mutation p.S1689G 0.11 benign(0) TCGA-NH-A5IV-01 6 38893860 38893862 AGG - DNAH8 In_Frame_Del p.G3448del 0.17 TCGA-NH-A5IV-01 6 38905899 38905899 G A DNAH8 Missense_Mutation p.G3688R 0.42 probably_damaging(1) TCGA-NH-A5IV-01 6 39281859 39281859 C T KCNK17 Splice_Site p.X79_splice 0.09 TCGA-NH-A5IV-01 6 393304 393304 G A IRF4 Missense_Mutation p.R51H 0.06 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 6 39824059 39824059 C - DAAM2 5'UTR 0.25 TCGA-NH-A5IV-01 6 39846978 39846978 C - DAAM2 Frame_Shift_Del p.P525Lfs*11 0.27 TCGA-NH-A5IV-01 6 39873603 39873603 G T MOCS1 3'UTR 0.39 TCGA-NH-A5IV-01 6 40360134 40360135 - G LRFN2 Frame_Shift_Ins p.W640Lfs*15 0.24 TCGA-NH-A5IV-01 6 40399490 40399490 G T LRFN2 Missense_Mutation p.Q455K 0.31 deleterious(0) possibly_damaging(0.876) TCGA-NH-A5IV-01 6 41029537 41029537 C T APOBEC2 Missense_Mutation p.A201V 0.47 tolerated(0.12) benign(0.034) TCGA-NH-A5IV-01 6 41162468 41162468 A G TREML2 Silent p.P160P 0.08 TCGA-NH-A5IV-01 6 41738798 41738798 A G FRS3 Silent p.D346D 0.27 TCGA-NH-A5IV-01 6 41888572 41888572 A G MED20 Intron 0.43 TCGA-NH-A5IV-01 6 43146197 43146197 T C SRF Missense_Mutation p.V443A 0.33 tolerated(0.1) possibly_damaging(0.857) TCGA-NH-A5IV-01 6 43307416 43307416 T C ZNF318 Missense_Mutation p.I1440M 0.43 benign(0.005) TCGA-NH-A5IV-01 6 43399924 43399924 G A ABCC10 Missense_Mutation p.R69Q 0.36 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 6 43527915 43527915 C A XPO5 Missense_Mutation p.K407N 0.37 deleterious(0) possibly_damaging(0.732) TCGA-NH-A5IV-01 6 47221231 47221231 C T TNFRSF21 Missense_Mutation p.A424T 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-NH-A5IV-01 6 49667575 49667575 G T CRISP2 Silent p.A71A 0.39 TCGA-NH-A5IV-01 6 4995423 4995424 - T RPP40 Frame_Shift_Ins p.N327Kfs*2 0.27 TCGA-NH-A5IV-01 6 50811048 50811048 G T TFAP2B Silent p.T442T 0.15 TCGA-NH-A5IV-01 6 5086891 5086891 C T PPP1R3G 3'UTR 0.62 TCGA-NH-A5IV-01 6 52993699 52993699 A G GCM1 Missense_Mutation p.W206R 0.41 tolerated(0.24) benign(0.014) TCGA-NH-A5IV-01 6 53787572 53787572 G A LRRC1 Missense_Mutation p.R519Q 0.50 tolerated(0.06) benign(0.037) TCGA-NH-A5IV-01 6 54173629 54173629 G A TINAG Missense_Mutation p.C94Y 0.38 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 6 54805757 54805757 G A FAM83B Missense_Mutation p.R663Q 0.39 deleterious(0.02) probably_damaging(0.943) TCGA-NH-A5IV-01 6 56325047 56325047 C T DST Silent p.T5045T 0.32 TCGA-NH-A5IV-01 6 57512754 57512754 T C PRIM2 3'UTR 0.11 TCGA-NH-A5IV-01 6 69785888 69785888 G A BAI3 Missense_Mutation p.G813D 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-NH-A5IV-01 6 70459292 70459292 T C LMBRD1 Silent p.K138K 0.32 TCGA-NH-A5IV-01 6 70733553 70733553 C T COL19A1 Missense_Mutation p.A354V 0.13 tolerated(0.3) unknown(0) TCGA-NH-A5IV-01 6 71004007 71004007 C T COL9A1 Missense_Mutation p.V187M 0.37 unknown(0) TCGA-NH-A5IV-01 6 71009843 71009843 C T COL9A1 Missense_Mutation p.A68T 0.38 unknown(0) TCGA-NH-A5IV-01 6 71571706 71571706 A G SMAP1 3'UTR 0.36 TCGA-NH-A5IV-01 6 72892051 72892051 G A RIMS1 Missense_Mutation p.V293M 0.08 tolerated(0.39) benign(0.421) TCGA-NH-A5IV-01 6 73332152 73332152 C T KCNQ5 Missense_Mutation p.R79C 0.36 deleterious(0.02) possibly_damaging(0.642) TCGA-NH-A5IV-01 6 74492433 74492433 G A CD109 Missense_Mutation p.R687Q 0.08 deleterious(0.03) probably_damaging(0.917) TCGA-NH-A5IV-01 6 7572263 7572263 T C DSP Missense_Mutation p.S698P 0.22 benign(0.179) TCGA-NH-A5IV-01 6 7583160 7583161 GA - DSP Frame_Shift_Del p.K1892Efs*4 0.37 TCGA-NH-A5IV-01 6 79787873 79787874 AG - PHIP 5'UTR 0.36 TCGA-NH-A5IV-01 6 80222927 80222927 A G LCA5 Splice_Site p.X240_splice 0.04 TCGA-NH-A5IV-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.27 TCGA-NH-A5IV-01 6 81053680 81053680 A - BCKDHB 3'UTR 0.32 TCGA-NH-A5IV-01 6 82461359 82461359 T A FAM46A Missense_Mutation p.D167V 0.11 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 6 82914612 82914612 C T IBTK Missense_Mutation p.R858Q 0.41 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 6 83775535 83775535 A G UBE3D 5'UTR 0.40 TCGA-NH-A5IV-01 6 83839113 83839113 T A DOPEY1 Missense_Mutation p.Y743N 0.12 tolerated(0.17) possibly_damaging(0.781) TCGA-NH-A5IV-01 6 84417610 84417610 C T SNAP91 Missense_Mutation p.A13T 0.39 deleterious(0) unknown(0) TCGA-NH-A5IV-01 6 86200330 86200330 G A NT5E Missense_Mutation p.V439M 0.26 deleterious(0) probably_damaging(0.986) TCGA-NH-A5IV-01 6 88107840 88107841 AT - C6orf164 5'UTR 0.23 TCGA-NH-A5IV-01 6 88239365 88239365 C T RARS2 Missense_Mutation p.R258H 0.38 deleterious(0) probably_damaging(0.988) TCGA-NH-A5IV-01 6 88385225 88385225 G - AKIRIN2 3'UTR 0.26 TCGA-NH-A5IV-01 6 89888720 89888720 A G GABRR1 Silent p.D403D 0.42 TCGA-NH-A5IV-01 6 90331679 90331679 G A ANKRD6 Silent p.K277K 0.36 TCGA-NH-A5IV-01 6 90362721 90362721 G A MDN1 Missense_Mutation p.T5272M 0.42 unknown(0) TCGA-NH-A5IV-01 6 93982097 93982097 C T EPHA7 Silent p.Q456Q 0.04 TCGA-NH-A5IV-01 6 96652045 96652045 C T FUT9 Silent p.C338C 0.33 TCGA-NH-A5IV-01 6 96656347 96656347 G T FUT9 3'UTR 0.44 TCGA-NH-A5IV-01 6 96662152 96662153 - T FUT9 3'UTR 0.28 TCGA-NH-A5IV-01 6 96662522 96662522 A G FUT9 3'UTR 0.38 TCGA-NH-A5IV-01 6 97058559 97058559 G A FHL5 Missense_Mutation p.D206N 0.33 tolerated(0.11) possibly_damaging(0.754) TCGA-NH-A5IV-01 6 99283847 99283847 G - POU3F2 Frame_Shift_Del p.A368Lfs*31 0.18 TCGA-NH-A5IV-01 6 99848809 99848809 T C PNISR Silent p.K675K 0.35 TCGA-NH-A5IV-01 7 100029194 100029194 G A MEPCE Missense_Mutation p.R518Q 0.38 tolerated(0.25) benign(0.002) TCGA-NH-A5IV-01 7 100087052 100087052 G - NYAP1 Frame_Shift_Del p.V572Cfs*2 0.27 TCGA-NH-A5IV-01 7 100190440 100190440 G A FBXO24 Missense_Mutation p.R236H 0.38 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-NH-A5IV-01 7 100225065 100225065 T C TFR2 Missense_Mutation p.N606S 0.31 tolerated(0.13) benign(0.347) TCGA-NH-A5IV-01 7 100382323 100382323 G T ZAN Missense_Mutation p.R2233L 0.33 unknown(0) TCGA-NH-A5IV-01 7 100464996 100464996 A - TRIP6 5'UTR 0.62 TCGA-NH-A5IV-01 7 100466480 100466480 G A TRIP6 Missense_Mutation p.G243R 0.47 tolerated(0.18) benign(0.074) TCGA-NH-A5IV-01 7 100675732 100675732 G A MUC17 Silent p.P345P 0.45 TCGA-NH-A5IV-01 7 100677498 100677498 C T MUC17 Missense_Mutation p.T934M 0.20 probably_damaging(0.996) TCGA-NH-A5IV-01 7 100730930 100730930 G - TRIM56 Frame_Shift_Del p.P115Rfs*80 0.29 TCGA-NH-A5IV-01 7 100839219 100839219 G A MOGAT3 3'UTR 0.28 TCGA-NH-A5IV-01 7 100877613 100877613 G A CLDN15 Missense_Mutation p.L110F 0.40 tolerated(0.68) benign(0.195) TCGA-NH-A5IV-01 7 102246351 102246351 G A RASA4 Missense_Mutation p.P128S 0.05 tolerated(0.35) benign(0.004) TCGA-NH-A5IV-01 7 102574602 102574602 A G LRRC17 Missense_Mutation p.Q81R 0.35 tolerated(0.47) benign(0.003) TCGA-NH-A5IV-01 7 103113235 103113235 A - RELN 3'UTR 0.39 TCGA-NH-A5IV-01 7 103137117 103137117 T C RELN Missense_Mutation p.T3017A 0.30 deleterious(0.02) benign(0.41) TCGA-NH-A5IV-01 7 107677931 107677931 T C LAMB4 Silent p.K1527K 0.44 TCGA-NH-A5IV-01 7 108112925 108112925 T - PNPLA8 Frame_Shift_Del p.T757Qfs*10 0.26 TCGA-NH-A5IV-01 7 108155588 108155588 A - PNPLA8 Frame_Shift_Del p.F116Lfs*7 0.25 TCGA-NH-A5IV-01 7 1094971 1094971 G A GPR146 5'UTR 0.41 TCGA-NH-A5IV-01 7 110765059 110765059 A - LRRN3 3'UTR 0.28 TCGA-NH-A5IV-01 7 114619729 114619729 A - MDFIC Frame_Shift_Del p.M240Cfs*11 0.12 TCGA-NH-A5IV-01 7 116165024 116165024 C T CAV1 5'UTR 0.33 TCGA-NH-A5IV-01 7 116339543 116339543 C T MET Silent p.S135S 0.08 TCGA-NH-A5IV-01 7 117067417 117067417 G A ASZ1 Missense_Mutation p.T33M 0.42 tolerated(0.1) benign(0.238) TCGA-NH-A5IV-01 7 117176697 117176697 C T CFTR Missense_Mutation p.A280V 0.31 tolerated(0.41) benign(0.024) TCGA-NH-A5IV-01 7 117864800 117864800 G A ANKRD7 5'UTR 0.38 TCGA-NH-A5IV-01 7 117868045 117868045 G C ANKRD7 Intron 0.09 TCGA-NH-A5IV-01 7 120971879 120971879 G - WNT16 Frame_Shift_Del p.G167Afs*17 0.29 TCGA-NH-A5IV-01 7 122153322 122153322 C T CADPS2 Missense_Mutation p.R508H 0.35 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 7 122338760 122338760 C T RNF133 Silent p.V71V 0.34 TCGA-NH-A5IV-01 7 123594528 123594528 G A SPAM1 Missense_Mutation p.A302T 0.34 deleterious(0.02) benign(0.016) TCGA-NH-A5IV-01 7 124482988 124482988 T C POT1 Missense_Mutation p.T346A 0.42 deleterious(0.01) possibly_damaging(0.625) TCGA-NH-A5IV-01 7 131817888 131817888 A G PLXNA4 Missense_Mutation p.S1837P 0.38 deleterious(0) possibly_damaging(0.88) TCGA-NH-A5IV-01 7 134143786 134143786 C T AKR1B1 Missense_Mutation p.G10D 0.41 deleterious(0.02) possibly_damaging(0.687) TCGA-NH-A5IV-01 7 135279415 135279415 G A NUP205 Missense_Mutation p.A651T 0.09 tolerated(0.21) benign(0.05) TCGA-NH-A5IV-01 7 138522486 138522486 C T KIAA1549 3'UTR 0.13 TCGA-NH-A5IV-01 7 138960860 138960860 G A UBN2 Missense_Mutation p.S664N 0.36 deleterious(0) probably_damaging(0.977) TCGA-NH-A5IV-01 7 139229194 139229194 C T CLEC2L 3'UTR 0.27 TCGA-NH-A5IV-01 7 139719887 139719887 C T TBXAS1 Silent p.I577I 0.50 TCGA-NH-A5IV-01 7 140051241 140051241 A G SLC37A3 Silent p.G238G 0.05 TCGA-NH-A5IV-01 7 141296367 141296367 T C AGK Silent p.F49F 0.37 TCGA-NH-A5IV-01 7 14217746 14217746 C T DGKB Missense_Mutation p.G719D 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 7 143270135 143270135 C T CTAGE15 Nonsense_Mutation p.R409* 0.07 TCGA-NH-A5IV-01 7 143453208 143453208 C T CTAGE6 Missense_Mutation p.G515D 0.30 tolerated(0.08) possibly_damaging(0.627) TCGA-NH-A5IV-01 7 143657957 143657957 G - OR2F1 Frame_Shift_Del p.A300Pfs*12 0.30 TCGA-NH-A5IV-01 7 143748022 143748024 CTT - OR2A5 In_Frame_Del p.F178del 0.39 TCGA-NH-A5IV-01 7 143882532 143882532 A - CTAGE4 Frame_Shift_Del p.M647* 0.09 TCGA-NH-A5IV-01 7 144096190 144096190 G - NOBOX Frame_Shift_Del p.P441Hfs*25 0.28 TCGA-NH-A5IV-01 7 148701071 148701071 C T PDIA4 Missense_Mutation p.A585T 0.09 deleterious(0.01) possibly_damaging(0.645) TCGA-NH-A5IV-01 7 148701135 148701135 G A PDIA4 Silent p.P563P 0.39 TCGA-NH-A5IV-01 7 148802126 148802126 G A ZNF425 Silent p.C279C 0.39 TCGA-NH-A5IV-01 7 148809323 148809323 G A ZNF425 Silent p.S70S 0.49 TCGA-NH-A5IV-01 7 149171864 149171864 C T ZNF746 Missense_Mutation p.G517S 0.41 tolerated(0.14) probably_damaging(0.994) TCGA-NH-A5IV-01 7 149477179 149477179 G A SSPO RNA 0.10 TCGA-NH-A5IV-01 7 149477357 149477357 C T SSPO RNA 0.35 TCGA-NH-A5IV-01 7 149479999 149479999 G A SSPO RNA 0.07 TCGA-NH-A5IV-01 7 149482074 149482074 C T SSPO RNA 0.07 TCGA-NH-A5IV-01 7 149489718 149489718 G A SSPO RNA 0.41 TCGA-NH-A5IV-01 7 149559483 149559483 C T ZNF862 Silent p.Y1078Y 0.44 TCGA-NH-A5IV-01 7 150028370 150028371 AC - ZBED6CL 3'UTR 0.28 TCGA-NH-A5IV-01 7 150488678 150488678 C - TMEM176B Frame_Shift_Del p.E252Rfs*88 0.27 TCGA-NH-A5IV-01 7 150698661 150698661 G T NOS3 Missense_Mutation p.K486N 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-NH-A5IV-01 7 150884151 150884151 G - ASB10 Frame_Shift_Del p.L23Sfs*83 0.17 TCGA-NH-A5IV-01 7 150884736 150884736 C T ASB10 5'Flank 0.13 TCGA-NH-A5IV-01 7 150945575 150945575 C A SMARCD3 Missense_Mutation p.G25V 0.43 deleterious_low_confidence(0.01) benign(0.026) TCGA-NH-A5IV-01 7 151372597 151372597 G - PRKAG2 Frame_Shift_Del p.P198Rfs*56 0.26 TCGA-NH-A5IV-01 7 1517282 1517282 C T INTS1 Silent p.S1614S 0.38 TCGA-NH-A5IV-01 7 151919093 151919094 TT - KMT2C Frame_Shift_Del p.K1164Rfs*17 0.25 TCGA-NH-A5IV-01 7 152132914 152132914 G - KMT2C 5'UTR 0.19 TCGA-NH-A5IV-01 7 152357858 152357858 G A XRCC2 Nonsense_Mutation p.R17* 0.54 TCGA-NH-A5IV-01 7 1523645 1523645 G A INTS1 Silent p.Y1141Y 0.20 TCGA-NH-A5IV-01 7 155595712 155595712 G A SHH Missense_Mutation p.P424L 0.36 tolerated(0.06) benign(0) TCGA-NH-A5IV-01 7 156802992 156802992 G - MNX1 Frame_Shift_Del p.P18Hfs*204 0.24 TCGA-NH-A5IV-01 7 157159248 157159248 A T DNAJB6 Silent p.G76G 0.33 TCGA-NH-A5IV-01 7 158580769 158580769 G A ESYT2 Missense_Mutation p.R273W 0.19 deleterious(0) probably_damaging(0.992) TCGA-NH-A5IV-01 7 158738313 158738313 G A WDR60 Missense_Mutation p.G1015D 0.45 deleterious(0.05) benign(0.002) TCGA-NH-A5IV-01 7 158896455 158896455 T G VIPR2 Missense_Mutation p.E117A 0.30 tolerated(0.11) benign(0.08) TCGA-NH-A5IV-01 7 1785373 1785373 G A ELFN1 Missense_Mutation p.V381M 0.41 deleterious(0) probably_damaging(0.995) TCGA-NH-A5IV-01 7 17861218 17861218 G A SNX13 Missense_Mutation p.R587W 0.42 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 7 1786721 1786721 C - ELFN1 3'UTR 0.30 TCGA-NH-A5IV-01 7 18705993 18705993 T C HDAC9 Missense_Mutation p.L542P 0.39 tolerated(0.28) benign(0.012) TCGA-NH-A5IV-01 7 19744414 19744414 C T TWISTNB Silent p.G128G 0.46 TCGA-NH-A5IV-01 7 21521575 21521575 T C SP4 Silent p.H647H 0.48 TCGA-NH-A5IV-01 7 2274868 2274869 CT - FTSJ2 Frame_Shift_Del p.E210Gfs*11 0.28 TCGA-NH-A5IV-01 7 2698630 2698630 G A TTYH3 Missense_Mutation p.R494H 0.35 deleterious(0) probably_damaging(0.953) TCGA-NH-A5IV-01 7 27149907 27149907 G A HOXA3 Missense_Mutation p.A118V 0.32 tolerated(0.26) benign(0.001) TCGA-NH-A5IV-01 7 29111459 29111459 T - CPVL Frame_Shift_Del p.K265Sfs*11 0.29 TCGA-NH-A5IV-01 7 29135829 29135829 T C CPVL Missense_Mutation p.Q98R 0.40 tolerated(0.15) benign(0.237) TCGA-NH-A5IV-01 7 2959067 2959067 C T CARD11 Missense_Mutation p.A817T 0.27 tolerated(0.61) benign(0.041) TCGA-NH-A5IV-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.27 TCGA-NH-A5IV-01 7 30491381 30491381 G A NOD1 Missense_Mutation p.A551V 0.54 tolerated(0.26) benign(0.022) TCGA-NH-A5IV-01 7 30673422 30673422 G A GARS Silent p.R722R 0.26 TCGA-NH-A5IV-01 7 30831132 30831132 A G FAM188B Missense_Mutation p.T339A 0.17 tolerated(0.84) benign(0.003) TCGA-NH-A5IV-01 7 33028127 33028127 G A FKBP9 Missense_Mutation p.R301Q 0.26 tolerated(0.09) probably_damaging(0.975) TCGA-NH-A5IV-01 7 34118622 34118622 G A BMPER Missense_Mutation p.R411Q 0.39 tolerated(0.05) benign(0.019) TCGA-NH-A5IV-01 7 35942696 35942696 G A SEPT7 Missense_Mutation p.R383H 0.35 deleterious(0.04) benign(0.239) TCGA-NH-A5IV-01 7 36194639 36194639 G - EEPD1 Frame_Shift_Del p.T239Pfs*23 0.41 TCGA-NH-A5IV-01 7 36456710 36456710 C T ANLN Missense_Mutation p.T515M 0.32 tolerated(0.11) benign(0.02) TCGA-NH-A5IV-01 7 3658798 3658798 G A SDK1 Missense_Mutation p.E129K 0.33 tolerated(0.08) possibly_damaging(0.559) TCGA-NH-A5IV-01 7 37298815 37298816 GA - ELMO1 Frame_Shift_Del p.L128Pfs*10 0.37 TCGA-NH-A5IV-01 7 37955827 37955827 G A SFRP4 Missense_Mutation p.R105C 0.44 deleterious(0.01) probably_damaging(0.985) TCGA-NH-A5IV-01 7 37989891 37989891 C T EPDR1 Missense_Mutation p.R190W 0.33 deleterious(0) probably_damaging(0.964) TCGA-NH-A5IV-01 7 38781605 38781605 G A VPS41 Silent p.L747L 0.38 TCGA-NH-A5IV-01 7 38791885 38791885 T C VPS41 Missense_Mutation p.H606R 0.41 tolerated(0.45) benign(0.342) TCGA-NH-A5IV-01 7 40127790 40127790 G A CDK13 Missense_Mutation p.G1032D 0.43 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 7 42005076 42005076 C T GLI3 Missense_Mutation p.V1199I 0.38 tolerated_low_confidence(0.06) benign(0.079) TCGA-NH-A5IV-01 7 4247862 4247862 C T SDK1 Silent p.N1782N 0.28 TCGA-NH-A5IV-01 7 43508589 43508589 G A HECW1 Missense_Mutation p.R995H 0.46 tolerated(0.85) benign(0.081) TCGA-NH-A5IV-01 7 44046944 44046944 G A SPDYE1 Missense_Mutation p.R237H 0.31 tolerated(0.61) benign(0.04) TCGA-NH-A5IV-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.32 TCGA-NH-A5IV-01 7 44185175 44185175 G A GCK Missense_Mutation p.R393C 0.24 deleterious(0) probably_damaging(0.965) TCGA-NH-A5IV-01 7 44260472 44260472 C T CAMK2B Silent p.T542T 0.34 TCGA-NH-A5IV-01 7 44664128 44664128 C T OGDH Silent p.Y62Y 0.44 TCGA-NH-A5IV-01 7 44795792 44795792 G C ZMIZ2 5'UTR 0.36 TCGA-NH-A5IV-01 7 45010608 45010608 G A MYO1G Silent p.G299G 0.50 TCGA-NH-A5IV-01 7 45753572 45753572 C T ADCY1 Missense_Mutation p.A1113V 0.08 tolerated_low_confidence(0.43) benign(0.002) TCGA-NH-A5IV-01 7 47408286 47408286 G A TNS3 Missense_Mutation p.P653S 0.41 tolerated(0.13) benign(0.006) TCGA-NH-A5IV-01 7 47894847 47894847 C T PKD1L1 Missense_Mutation p.G1536D 0.37 tolerated(0.5) benign(0.004) TCGA-NH-A5IV-01 7 4794884 4794884 C T FOXK1 Missense_Mutation p.P307L 0.24 deleterious(0) probably_damaging(0.988) TCGA-NH-A5IV-01 7 4799167 4799167 C T FOXK1 Missense_Mutation p.A546V 0.26 tolerated(0.37) benign(0.217) TCGA-NH-A5IV-01 7 4998708 4998708 G - MMD2 5'UTR 0.24 TCGA-NH-A5IV-01 7 5262288 5262288 G A WIPI2 Missense_Mutation p.R242Q 0.36 deleterious(0.02) benign(0.349) TCGA-NH-A5IV-01 7 53104168 53104168 G T POM121L12 Missense_Mutation p.W268C 0.38 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-NH-A5IV-01 7 5427947 5427947 G A TNRC18 Missense_Mutation p.P503L 0.37 benign(0.012) TCGA-NH-A5IV-01 7 56020976 56020976 G A MRPS17 Missense_Mutation p.V30M 0.37 deleterious(0) probably_damaging(0.98) TCGA-NH-A5IV-01 7 56126143 56126143 A - CCT6A Frame_Shift_Del p.I274* 0.15 TCGA-NH-A5IV-01 7 56148881 56148881 G A PHKG1 Missense_Mutation p.R376C 0.31 deleterious(0.01) possibly_damaging(0.633) TCGA-NH-A5IV-01 7 64388516 64388516 C A ZNF273 Silent p.A270A 0.46 TCGA-NH-A5IV-01 7 64852888 64852888 G A ZNF92 Missense_Mutation p.R26Q 0.31 tolerated(1) benign(0.016) TCGA-NH-A5IV-01 7 6541445 6541445 G - GRID2IP Frame_Shift_Del p.S1123Lfs*62 0.25 TCGA-NH-A5IV-01 7 65579821 65579821 G A CRCP 5'UTR 0.39 TCGA-NH-A5IV-01 7 6820986 6820986 C T RSPH10B2 Missense_Mutation p.T546M 0.36 deleterious(0) probably_damaging(0.945) TCGA-NH-A5IV-01 7 71571190 71571191 - C CALN1 Frame_Shift_Ins p.Y112Vfs*26 0.14 TCGA-NH-A5IV-01 7 72413249 72413249 C T POM121 Missense_Mutation p.A641V 0.08 tolerated(0.08) possibly_damaging(0.814) TCGA-NH-A5IV-01 7 73008328 73008328 G C MLXIPL Intron 0.50 TCGA-NH-A5IV-01 7 73151589 73151589 G T ABHD11 Silent p.R199R 0.38 TCGA-NH-A5IV-01 7 73771767 73771767 T C CLIP2 Missense_Mutation p.V392A 0.12 deleterious(0.04) possibly_damaging(0.701) TCGA-NH-A5IV-01 7 73803510 73803510 C T CLIP2 Silent p.L881L 0.44 TCGA-NH-A5IV-01 7 74767293 74767293 C T AC118138.2 RNA 0.30 TCGA-NH-A5IV-01 7 77365776 77365776 A G RSBN1L Silent p.E212E 0.38 TCGA-NH-A5IV-01 7 81372195 81372195 T C HGF Intron 0.55 TCGA-NH-A5IV-01 7 825227 825227 C T HEATR2 Silent p.H835H 0.12 TCGA-NH-A5IV-01 7 83098559 83098559 C T SEMA3E Silent p.A112A 0.33 TCGA-NH-A5IV-01 7 84671582 84671582 C T SEMA3D Missense_Mutation p.R294H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A5IV-01 7 86415789 86415789 C T GRM3 Silent p.I227I 0.35 TCGA-NH-A5IV-01 7 87031487 87031487 C T ABCB4 Silent p.T1262T 0.36 TCGA-NH-A5IV-01 7 87160787 87160787 A G ABCB1 Silent p.I836I 0.44 TCGA-NH-A5IV-01 7 89793949 89793949 A G STEAP1 Missense_Mutation p.I307M 0.15 deleterious(0) benign(0.425) TCGA-NH-A5IV-01 7 89874544 89874544 G - C7orf63 5'UTR 0.33 TCGA-NH-A5IV-01 7 89901250 89901250 C A C7orf63 Missense_Mutation p.L280I 0.40 tolerated(0.05) probably_damaging(0.998) TCGA-NH-A5IV-01 7 90044766 90044766 T - CLDN12 3'UTR 0.29 TCGA-NH-A5IV-01 7 92731045 92731045 A G SAMD9 Missense_Mutation p.Y1456H 0.06 deleterious(0.01) benign(0.062) TCGA-NH-A5IV-01 7 92765193 92765193 T C SAMD9L Missense_Mutation p.E31G 0.37 deleterious(0.02) possibly_damaging(0.662) TCGA-NH-A5IV-01 7 92938174 92938174 G A CCDC132 Silent p.E556E 0.42 TCGA-NH-A5IV-01 7 93055735 93055735 T C CALCR Missense_Mutation p.N487S 0.39 tolerated(0.13) benign(0.01) TCGA-NH-A5IV-01 7 931994 931994 G A GET4 Missense_Mutation p.G229R 0.36 deleterious(0.01) benign(0.318) TCGA-NH-A5IV-01 7 94176469 94176469 T - CASD1 Frame_Shift_Del p.L567Wfs*23 0.12 TCGA-NH-A5IV-01 7 94293002 94293002 G A PEG10 Missense_Mutation p.R45Q 0.41 tolerated_low_confidence(0.16) benign(0.062) TCGA-NH-A5IV-01 7 97822153 97822153 C T LMTK2 Silent p.D792D 0.09 TCGA-NH-A5IV-01 7 97823726 97823726 C T LMTK2 Missense_Mutation p.P1317S 0.30 tolerated(0.08) benign(0.046) TCGA-NH-A5IV-01 7 98449084 98449084 G A TMEM130 Silent p.S322S 0.12 TCGA-NH-A5IV-01 7 98460814 98460814 C T TMEM130 Missense_Mutation p.V99M 0.38 tolerated(0.12) benign(0.067) TCGA-NH-A5IV-01 7 98994266 98994266 G A PDAP1 3'UTR 0.43 TCGA-NH-A5IV-01 7 99017082 99017082 C A BUD31 3'UTR 0.45 TCGA-NH-A5IV-01 7 99054195 99054195 G A CPSF4 3'UTR 0.50 TCGA-NH-A5IV-01 7 99056808 99056808 T C ATP5J2 Missense_Mutation p.Y73C 0.16 deleterious(0.03) benign(0.443) TCGA-NH-A5IV-01 7 99056883 99056883 T C ATP5J2 Missense_Mutation p.Y48C 0.28 deleterious(0.04) possibly_damaging(0.534) TCGA-NH-A5IV-01 7 99527165 99527165 C T GJC3 Missense_Mutation p.V27M 0.48 deleterious(0.01) possibly_damaging(0.488) TCGA-NH-A5IV-01 7 99631520 99631520 T C ZKSCAN1 Silent p.N464N 0.25 TCGA-NH-A5IV-01 7 99707886 99707886 G A AP4M1 3'Flank 0.34 TCGA-NH-A5IV-01 7 99769525 99769525 G - GPC2 Frame_Shift_Del p.D350Tfs*24 0.35 TCGA-NH-A5IV-01 7 99999632 99999632 G A ZCWPW1 Nonsense_Mutation p.R502* 0.39 TCGA-NH-A5IV-01 8 100990291 100990292 - A RGS22 Frame_Shift_Ins p.G1125Wfs*5 0.26 TCGA-NH-A5IV-01 8 101271064 101271064 C T RNF19A Missense_Mutation p.G746D 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.541) TCGA-NH-A5IV-01 8 103307664 103307664 G A UBR5 Silent p.N1303N 0.31 TCGA-NH-A5IV-01 8 104075373 104075373 C T ATP6V1C1 Missense_Mutation p.R249C 0.38 deleterious(0.01) probably_damaging(0.98) TCGA-NH-A5IV-01 8 110348411 110348411 A G ENY2 Missense_Mutation p.I21V 0.34 tolerated(0.53) benign(0.004) TCGA-NH-A5IV-01 8 110454310 110454310 C T PKHD1L1 Nonsense_Mutation p.Q1427* 0.38 TCGA-NH-A5IV-01 8 110464996 110464996 G - PKHD1L1 Frame_Shift_Del p.G2188Efs*28 0.40 TCGA-NH-A5IV-01 8 110504223 110504223 G T PKHD1L1 Missense_Mutation p.E3412D 0.36 tolerated(0.15) probably_damaging(0.947) TCGA-NH-A5IV-01 8 110587579 110587579 C T SYBU Silent p.S516S 0.12 TCGA-NH-A5IV-01 8 11188938 11188938 C T SLC35G5 Missense_Mutation p.A108V 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A5IV-01 8 113237069 113237069 G A CSMD3 Silent p.N3685N 0.14 TCGA-NH-A5IV-01 8 113241029 113241029 A - CSMD3 Frame_Shift_Del p.F3640Lfs*61 0.29 TCGA-NH-A5IV-01 8 116599511 116599511 G A TRPS1 Missense_Mutation p.T806I 0.40 deleterious_low_confidence(0.01) benign(0.134) TCGA-NH-A5IV-01 8 11695963 11695963 C A FDFT1 Silent p.R367R 0.41 TCGA-NH-A5IV-01 8 121298124 121298124 T C COL14A1 Missense_Mutation p.F1331S 0.34 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 8 121468815 121468815 T C MTBP Missense_Mutation p.Y218H 0.47 deleterious(0) probably_damaging(0.972) TCGA-NH-A5IV-01 8 12287880 12287880 C A FAM86B2 Missense_Mutation p.Q107H 0.12 tolerated(0.43) possibly_damaging(0.467) TCGA-NH-A5IV-01 8 123965609 123965609 C T ZHX2 Missense_Mutation p.A620V 0.35 tolerated(0.16) benign(0.004) TCGA-NH-A5IV-01 8 124105907 124105907 C T TBC1D31 Missense_Mutation p.T199I 0.15 deleterious(0) possibly_damaging(0.881) TCGA-NH-A5IV-01 8 125081695 125081695 C - FER1L6 Frame_Shift_Del p.N1273Tfs*23 0.28 TCGA-NH-A5IV-01 8 126011893 126011893 C - SQLE Frame_Shift_Del p.P85Lfs*25 0.29 TCGA-NH-A5IV-01 8 12883764 12883764 G A KIAA1456 3'UTR 0.40 TCGA-NH-A5IV-01 8 12883967 12883967 G - KIAA1456 3'UTR 0.29 TCGA-NH-A5IV-01 8 12943824 12943824 T C DLC1 Missense_Mutation p.T1481A 0.42 deleterious(0.01) possibly_damaging(0.61) TCGA-NH-A5IV-01 8 131130807 131130807 C T ASAP1 Silent p.R574R 0.45 TCGA-NH-A5IV-01 8 131172126 131172126 G A ASAP1 Silent p.L332L 0.40 TCGA-NH-A5IV-01 8 133829263 133829263 T C PHF20L1 Silent p.T438T 0.30 TCGA-NH-A5IV-01 8 134034305 134034305 G A TG Missense_Mutation p.A2316T 0.34 tolerated(0.83) benign(0.014) TCGA-NH-A5IV-01 8 134251327 134251327 G A NDRG1 Missense_Mutation p.R327C 0.36 deleterious(0) possibly_damaging(0.832) TCGA-NH-A5IV-01 8 135725128 135725128 A - ZFAT 5'UTR 0.38 TCGA-NH-A5IV-01 8 139768067 139768067 G A COL22A1 Silent p.D636D 0.17 TCGA-NH-A5IV-01 8 140743290 140743290 G A TRAPPC9 3'UTR 0.25 TCGA-NH-A5IV-01 8 141595218 141595218 C A AGO2 Missense_Mutation p.R72M 0.09 deleterious(0) probably_damaging(0.937) TCGA-NH-A5IV-01 8 141678498 141678498 G - PTK2 Frame_Shift_Del p.P925Lfs*17 0.28 TCGA-NH-A5IV-01 8 143832542 143832542 C T LYPD2 Silent p.S35S 0.38 TCGA-NH-A5IV-01 8 143996217 143996217 C T CYP11B2 Missense_Mutation p.V235I 0.44 tolerated(0.4) benign(0.403) TCGA-NH-A5IV-01 8 144399896 144399896 G A TOP1MT Missense_Mutation p.R443C 0.17 tolerated(0.06) benign(0.022) TCGA-NH-A5IV-01 8 144687925 144687925 G A PYCRL Missense_Mutation p.T269I 0.44 tolerated(0.15) benign(0.015) TCGA-NH-A5IV-01 8 144789984 144789984 C T CCDC166 Missense_Mutation p.R99H 0.30 tolerated(0.2) probably_damaging(0.999) TCGA-NH-A5IV-01 8 144885623 144885623 C T SCRIB Missense_Mutation p.R1178H 0.43 probably_damaging(0.988) TCGA-NH-A5IV-01 8 144992347 144992347 C T PLEC Missense_Mutation p.R4018H 0.38 benign(0.266) TCGA-NH-A5IV-01 8 145006963 145006963 C T PLEC Missense_Mutation p.E716K 0.32 unknown(0) TCGA-NH-A5IV-01 8 145065693 145065693 A G GRINA Missense_Mutation p.Q101R 0.34 tolerated(0.26) unknown(0) TCGA-NH-A5IV-01 8 145150876 145150876 C - CYC1 Frame_Shift_Del p.S93Afs*161 0.32 TCGA-NH-A5IV-01 8 145634519 145634519 C T CPSF1 Silent p.A8A 0.36 TCGA-NH-A5IV-01 8 145639435 145639435 C T SLC39A4 Silent p.Q398Q 0.42 TCGA-NH-A5IV-01 8 145745893 145745893 C T LRRC14 Nonsense_Mutation p.R201* 0.25 TCGA-NH-A5IV-01 8 145755666 145755666 G A ARHGAP39 3'UTR 0.33 TCGA-NH-A5IV-01 8 146067178 146067178 A - ZNF7 Frame_Shift_Del p.K231Sfs*59 0.28 TCGA-NH-A5IV-01 8 17794750 17794750 G A PCM1 Silent p.S68S 0.40 TCGA-NH-A5IV-01 8 17838242 17838242 T C PCM1 Silent p.N1362N 0.14 TCGA-NH-A5IV-01 8 2054108 2054108 C T MYOM2 Silent p.D937D 0.42 TCGA-NH-A5IV-01 8 21563550 21563550 G T GFRA2 Silent p.S266S 0.14 TCGA-NH-A5IV-01 8 21955753 21955753 G A FAM160B2 Missense_Mutation p.E234K 0.36 tolerated(0.46) benign(0.036) TCGA-NH-A5IV-01 8 21965813 21965813 C - NUDT18 Frame_Shift_Del p.S70Rfs*23 0.18 TCGA-NH-A5IV-01 8 22106021 22106021 G A POLR3D Missense_Mutation p.D172N 0.38 tolerated(0.06) possibly_damaging(0.537) TCGA-NH-A5IV-01 8 22472494 22472494 T A CCAR2 Missense_Mutation p.D395E 0.08 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 8 22548227 22548227 C T EGR3 Missense_Mutation p.R308Q 0.38 deleterious(0) probably_damaging(0.971) TCGA-NH-A5IV-01 8 23302044 23302044 T A ENTPD4 Missense_Mutation p.H163L 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-NH-A5IV-01 8 23538897 23538897 C T NKX3-1 Missense_Mutation p.R181Q 0.46 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 8 23538947 23538947 C T NKX3-1 Silent p.T164T 0.43 TCGA-NH-A5IV-01 8 24771483 24771483 G A NEFM Silent p.P59P 0.46 TCGA-NH-A5IV-01 8 25156586 25156586 C A DOCK5 Missense_Mutation p.L245I 0.42 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 8 25240199 25240199 G A DOCK5 Missense_Mutation p.A1346T 0.30 deleterious(0) possibly_damaging(0.906) TCGA-NH-A5IV-01 8 25898177 25898177 C T EBF2 Silent p.T121T 0.37 TCGA-NH-A5IV-01 8 26721805 26721805 C T ADRA1A Missense_Mutation p.D228N 0.10 tolerated(0.41) possibly_damaging(0.61) TCGA-NH-A5IV-01 8 27145457 27145457 C - TRIM35 Frame_Shift_Del p.L365Cfs*47 0.28 TCGA-NH-A5IV-01 8 27288437 27288437 C T PTK2B Silent p.Y238Y 0.27 TCGA-NH-A5IV-01 8 30038143 30038143 G A DCTN6 Silent p.P157P 0.40 TCGA-NH-A5IV-01 8 30694423 30694423 C T TEX15 Missense_Mutation p.R2743Q 0.11 tolerated(1) benign(0) TCGA-NH-A5IV-01 8 30922546 30922546 T C WRN Silent p.N157N 0.40 TCGA-NH-A5IV-01 8 32621362 32621362 C A NRG1 Silent p.P460P 0.29 TCGA-NH-A5IV-01 8 37555934 37555936 CGC - ZNF703 In_Frame_Del p.A514del 0.31 TCGA-NH-A5IV-01 8 37691605 37691605 G - GPR124 Frame_Shift_Del p.A525Pfs*12 0.24 TCGA-NH-A5IV-01 8 38205614 38205614 C T WHSC1L1 Missense_Mutation p.A26T 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.504) TCGA-NH-A5IV-01 8 38285864 38285864 G A FGFR1 Intron 0.32 TCGA-NH-A5IV-01 8 38646307 38646307 G A TACC1 Missense_Mutation p.G83R 0.19 deleterious(0.01) benign(0.061) TCGA-NH-A5IV-01 8 39068767 39068767 A - ADAM32 Frame_Shift_Del p.K388Nfs*39 0.49 TCGA-NH-A5IV-01 8 39785749 39785749 A G IDO1 3'UTR 0.15 TCGA-NH-A5IV-01 8 40012727 40012727 G C C8orf4 3'UTR 0.33 TCGA-NH-A5IV-01 8 42587329 42587329 T C CHRNB3 Silent p.I293I 0.39 TCGA-NH-A5IV-01 8 42587570 42587571 - A CHRNB3 Frame_Shift_Ins p.K377Efs*6 0.31 TCGA-NH-A5IV-01 8 48733479 48733479 C T PRKDC Missense_Mutation p.R3045H 0.44 probably_damaging(0.996) TCGA-NH-A5IV-01 8 49986806 49986806 G T C8orf22 Silent p.V49V 0.41 TCGA-NH-A5IV-01 8 54791966 54791966 C - RGS20 Frame_Shift_Del p.L107Cfs*41 0.20 TCGA-NH-A5IV-01 8 54891623 54891623 A G TCEA1 Missense_Mutation p.C263R 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 8 55533726 55533726 T C RP1 Missense_Mutation p.L67P 0.47 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 8 55539031 55539031 C T RP1 Silent p.H863H 0.34 TCGA-NH-A5IV-01 8 55539755 55539755 G A RP1 Missense_Mutation p.V1105I 0.04 tolerated(0.56) benign(0.012) TCGA-NH-A5IV-01 8 59498553 59498553 C T NSMAF Missense_Mutation p.R849H 0.43 deleterious(0.01) probably_damaging(0.91) TCGA-NH-A5IV-01 8 62415836 62415836 G A ASPH 3'UTR 0.55 TCGA-NH-A5IV-01 8 6299660 6299660 G A MCPH1 Missense_Mutation p.R218H 0.45 tolerated(1) benign(0) TCGA-NH-A5IV-01 8 6500542 6500542 C T MCPH1 Missense_Mutation p.A827V 0.39 tolerated(0.15) benign(0.021) TCGA-NH-A5IV-01 8 65495743 65495743 A C BHLHE22 3'UTR 0.12 TCGA-NH-A5IV-01 8 65496033 65496034 - T BHLHE22 3'UTR 0.26 TCGA-NH-A5IV-01 8 66631409 66631409 C T PDE7A 3'UTR 0.46 TCGA-NH-A5IV-01 8 67576912 67576912 G A VCPIP1 Missense_Mutation p.T761I 0.35 deleterious(0.03) possibly_damaging(0.622) TCGA-NH-A5IV-01 8 68111087 68111087 T - ARFGEF1 3'UTR 0.29 TCGA-NH-A5IV-01 8 69104640 69104640 C T PREX2 Missense_Mutation p.T1495I 0.38 tolerated_low_confidence(0.16) benign(0.004) TCGA-NH-A5IV-01 8 70515458 70515458 G C SULF1 Missense_Mutation p.A365P 0.45 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 8 74204495 74204495 G A RPL7 Missense_Mutation p.A90V 0.44 tolerated(0.16) benign(0.152) TCGA-NH-A5IV-01 8 74233249 74233249 T A RDH10 Missense_Mutation p.I236N 0.45 deleterious(0) probably_damaging(0.949) TCGA-NH-A5IV-01 8 75276611 75276611 G A GDAP1 3'UTR 0.30 TCGA-NH-A5IV-01 8 77763212 77763212 A G ZFHX4 Missense_Mutation p.K1352R 0.13 possibly_damaging(0.486) TCGA-NH-A5IV-01 8 86386634 86386635 - T CA2 Frame_Shift_Ins p.L147Ffs*7 0.37 TCGA-NH-A5IV-01 8 8749010 8749012 AAG - MFHAS1 In_Frame_Del p.F519del 0.14 TCGA-NH-A5IV-01 8 88886288 88886288 C T DCAF4L2 5'UTR 0.43 TCGA-NH-A5IV-01 8 89053571 89053571 C G MMP16 3'UTR 0.42 TCGA-NH-A5IV-01 8 91078177 91078177 T - CALB1 Frame_Shift_Del p.A134Qfs*10 0.30 TCGA-NH-A5IV-01 8 92330459 92330459 C G SLC26A7 Missense_Mutation p.L165V 0.12 tolerated(0.13) probably_damaging(0.948) TCGA-NH-A5IV-01 8 92972428 92972428 G A RUNX1T1 3'UTR 0.41 TCGA-NH-A5IV-01 8 98289932 98289932 G T TSPYL5 Missense_Mutation p.D47E 0.07 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 8 98736865 98736865 A - MTDH Frame_Shift_Del p.K574Rfs*33 0.28 TCGA-NH-A5IV-01 8 99170018 99170018 G T POP1 Missense_Mutation p.S865I 0.41 deleterious(0.03) benign(0.342) TCGA-NH-A5IV-01 8 9953340 9953340 C T MSRA Intron 0.46 TCGA-NH-A5IV-01 9 100088909 100088909 A G CCDC180 Missense_Mutation p.H584R 0.38 tolerated(0.06) possibly_damaging(0.514) TCGA-NH-A5IV-01 9 100857267 100857267 G A TRIM14 Silent p.L194L 0.47 TCGA-NH-A5IV-01 9 101125090 101125090 G A GABBR2 Silent p.I600I 0.41 TCGA-NH-A5IV-01 9 101552878 101552878 C T ANKS6 Missense_Mutation p.V124M 0.48 tolerated(0.17) possibly_damaging(0.482) TCGA-NH-A5IV-01 9 103090180 103090180 A G TEX10 Missense_Mutation p.S564P 0.39 tolerated(0.21) benign(0.206) TCGA-NH-A5IV-01 9 103340706 103340706 G A MURC Missense_Mutation p.R94Q 0.37 deleterious(0.04) benign(0.037) TCGA-NH-A5IV-01 9 106876359 106876359 A G SMC2 Missense_Mutation p.Y510C 0.40 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 9 111870786 111870786 C T TMEM245 Missense_Mutation p.R215H 0.52 tolerated(0.1) benign(0.002) TCGA-NH-A5IV-01 9 111899626 111899626 T - FRRS1L 3'UTR 0.52 TCGA-NH-A5IV-01 9 113168845 113168845 A G SVEP1 Missense_Mutation p.I3012T 0.47 probably_damaging(0.93) TCGA-NH-A5IV-01 9 116276868 116276868 G A RGS3 Silent p.T536T 0.34 TCGA-NH-A5IV-01 9 117005835 117005835 G A COL27A1 Missense_Mutation p.V977M 0.34 unknown(0) TCGA-NH-A5IV-01 9 119109459 119109459 T C PAPPA Missense_Mutation p.F1312S 0.30 deleterious(0) possibly_damaging(0.637) TCGA-NH-A5IV-01 9 120476548 120476548 C T TLR4 Silent p.P714P 0.32 TCGA-NH-A5IV-01 9 122004380 122004380 C T BRINP1 Missense_Mutation p.R175H 0.35 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 9 125391201 125391201 A G OR1B1 Missense_Mutation p.I205T 0.44 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 9 125512300 125512300 C T OR1L6 Silent p.T58T 0.43 TCGA-NH-A5IV-01 9 125551960 125551960 C T OR5C1 Missense_Mutation p.T250I 0.12 tolerated(0.09) benign(0.241) TCGA-NH-A5IV-01 9 125562724 125562725 - G OR1K1 Frame_Shift_Ins p.V110Gfs*3 0.21 TCGA-NH-A5IV-01 9 125898355 125898355 C T STRBP Missense_Mutation p.A580T 0.04 tolerated(0.25) benign(0.064) TCGA-NH-A5IV-01 9 126132966 126132966 G A CRB2 Missense_Mutation p.C545Y 0.35 deleterious(0) possibly_damaging(0.712) TCGA-NH-A5IV-01 9 126136061 126136061 C T CRB2 Missense_Mutation p.P1084L 0.42 tolerated(0.37) probably_damaging(0.977) TCGA-NH-A5IV-01 9 127700936 127700936 G A GOLGA1 Missense_Mutation p.P19S 0.49 tolerated(0.19) probably_damaging(0.94) TCGA-NH-A5IV-01 9 128678040 128678040 C T PBX3 Missense_Mutation p.A117V 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-NH-A5IV-01 9 129644486 129644486 T A ZBTB34 3'UTR 0.06 TCGA-NH-A5IV-01 9 130469281 130469282 - G C9orf117 5'UTR 0.41 TCGA-NH-A5IV-01 9 130491879 130491879 T C TTC16 Missense_Mutation p.I595T 0.20 tolerated(0.62) benign(0) TCGA-NH-A5IV-01 9 130495078 130495078 G - TOR2A Intron 0.24 TCGA-NH-A5IV-01 9 130511935 130511935 T C SH2D3C Missense_Mutation p.T232A 0.68 deleterious(0.03) possibly_damaging(0.588) TCGA-NH-A5IV-01 9 13122170 13122170 C T MPDZ Splice_Site p.X1652_splice 0.35 TCGA-NH-A5IV-01 9 131222920 131222920 C T ODF2 Intron 0.24 TCGA-NH-A5IV-01 9 131267129 131267129 C T GLE1 Silent p.R15R 0.43 TCGA-NH-A5IV-01 9 131583020 131583020 G A ENDOG Silent p.V168V 0.29 TCGA-NH-A5IV-01 9 131600388 131600388 C T CCBL1 Missense_Mutation p.C127Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-NH-A5IV-01 9 131745254 131745254 G A NUP188 Silent p.S581S 0.43 TCGA-NH-A5IV-01 9 131771467 131771467 G - SH3GLB2 Frame_Shift_Del p.P333Lfs*111 0.29 TCGA-NH-A5IV-01 9 131864814 131864814 C - CRAT Frame_Shift_Del p.K166Sfs*5 0.33 TCGA-NH-A5IV-01 9 131909837 131909837 G A PPP2R4 3'UTR 0.43 TCGA-NH-A5IV-01 9 133787236 133787236 G A FIBCD1 Missense_Mutation p.R297W 0.49 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 9 133799154 133799154 G A FIBCD1 Missense_Mutation p.R276C 0.43 deleterious(0.05) possibly_damaging(0.505) TCGA-NH-A5IV-01 9 133945152 133945152 A G LAMC3 Missense_Mutation p.D995G 0.36 deleterious(0) probably_damaging(0.99) TCGA-NH-A5IV-01 9 134108962 134108962 G A NUP214 3'UTR 0.40 TCGA-NH-A5IV-01 9 134390827 134390827 C - POMT1 Frame_Shift_Del p.L421* 0.30 TCGA-NH-A5IV-01 9 135073656 135073656 G A NTNG2 Missense_Mutation p.E173K 0.07 deleterious(0) possibly_damaging(0.698) TCGA-NH-A5IV-01 9 135073844 135073844 G A NTNG2 Silent p.T235T 0.49 TCGA-NH-A5IV-01 9 135470310 135470310 T C DDX31 Silent p.K833K 0.40 TCGA-NH-A5IV-01 9 135537950 135537950 C T DDX31 Missense_Mutation p.A175T 0.32 tolerated(0.39) benign(0.001) TCGA-NH-A5IV-01 9 135545903 135545903 C A GTF3C4 5'UTR 0.33 TCGA-NH-A5IV-01 9 135929835 135929835 C T GTF3C5 Silent p.S343S 0.32 TCGA-NH-A5IV-01 9 136199028 136199028 C A SURF6 Missense_Mutation p.G255C 0.09 deleterious(0) probably_damaging(0.954) TCGA-NH-A5IV-01 9 136287648 136287648 G A ADAMTS13 Missense_Mutation p.G29R 0.52 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-NH-A5IV-01 9 136342157 136342157 C T SLC2A6 Silent p.P154P 0.36 TCGA-NH-A5IV-01 9 136389926 136389926 C A TMEM8C Missense_Mutation p.S14I 0.08 deleterious(0) possibly_damaging(0.472) TCGA-NH-A5IV-01 9 137591903 137591903 C T COL5A1 Silent p.D142D 0.11 TCGA-NH-A5IV-01 9 137620555 137620555 G A COL5A1 Missense_Mutation p.E276K 0.50 benign(0.399) TCGA-NH-A5IV-01 9 138456096 138456096 T C PAEP Missense_Mutation p.V106A 0.47 tolerated(0.3) benign(0.002) TCGA-NH-A5IV-01 9 139008758 139008758 G A C9orf69 5'UTR 0.35 TCGA-NH-A5IV-01 9 139379417 139379417 C T C9orf163 Missense_Mutation p.P173S 0.35 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-NH-A5IV-01 9 139693629 139693629 G A CCDC183 Missense_Mutation p.R49H 0.27 tolerated(0.12) benign(0.014) TCGA-NH-A5IV-01 9 139699317 139699317 G A CCDC183 Intron 0.35 TCGA-NH-A5IV-01 9 139741051 139741051 A G C9orf172 Missense_Mutation p.S729G 0.35 deleterious(0.02) benign(0.364) TCGA-NH-A5IV-01 9 139906344 139906344 G A ABCA2 Silent p.S1829S 0.49 TCGA-NH-A5IV-01 9 139906951 139906951 G A ABCA2 Missense_Mutation p.R1725C 0.49 deleterious(0) benign(0.067) TCGA-NH-A5IV-01 9 140006327 140006327 C - DPP7 Frame_Shift_Del p.G402Vfs*28 0.24 TCGA-NH-A5IV-01 9 140033905 140033905 G A GRIN1 5'Flank 0.60 TCGA-NH-A5IV-01 9 140064015 140064015 G A LRRC26 Silent p.S127S 0.39 TCGA-NH-A5IV-01 9 140115375 140115375 C T RNF208 Missense_Mutation p.R97Q 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.462) TCGA-NH-A5IV-01 9 140417262 140417262 C T PNPLA7 Silent p.P265P 0.22 TCGA-NH-A5IV-01 9 140417279 140417279 C T PNPLA7 Missense_Mutation p.V260I 0.08 deleterious(0.03) benign(0.063) TCGA-NH-A5IV-01 9 140508863 140508863 T C ARRDC1 Missense_Mutation p.V244A 0.44 deleterious(0) probably_damaging(0.926) TCGA-NH-A5IV-01 9 140509724 140509724 G A ARRDC1 3'UTR 0.31 TCGA-NH-A5IV-01 9 140732961 140732961 C - EHMT1 3'Flank 0.25 TCGA-NH-A5IV-01 9 14842487 14842487 G T FREM1 Missense_Mutation p.P522Q 0.36 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 9 15171898 15171898 C - TTC39B 3'UTR 0.34 TCGA-NH-A5IV-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.24 TCGA-NH-A5IV-01 9 17395000 17395000 A G CNTLN Missense_Mutation p.I850V 0.33 tolerated(0.11) benign(0.034) TCGA-NH-A5IV-01 9 17486988 17486988 A G CNTLN Missense_Mutation p.E1348G 0.37 deleterious(0.03) possibly_damaging(0.86) TCGA-NH-A5IV-01 9 17502686 17502687 - T CNTLN 3'UTR 0.26 TCGA-NH-A5IV-01 9 17791233 17791233 A G SH3GL2 Missense_Mutation p.E210G 0.41 deleterious(0.02) benign(0.405) TCGA-NH-A5IV-01 9 18928547 18928547 G A FAM154A Missense_Mutation p.H310Y 0.38 deleterious(0.02) probably_damaging(0.992) TCGA-NH-A5IV-01 9 20740325 20740326 TA - FOCAD Frame_Shift_Del p.T129Hfs*2 0.11 TCGA-NH-A5IV-01 9 21409358 21409358 C - IFNA8 Frame_Shift_Del p.Q63Rfs*21 0.31 TCGA-NH-A5IV-01 9 25678031 25678031 G A TUSC1 Missense_Mutation p.R97W 0.37 deleterious(0) probably_damaging(0.994) TCGA-NH-A5IV-01 9 26978245 26978245 G A IFT74 Missense_Mutation p.M80I 0.39 tolerated(0.23) benign(0.082) TCGA-NH-A5IV-01 9 2718378 2718378 G A KCNV2 Silent p.R213R 0.41 TCGA-NH-A5IV-01 9 32542137 32542137 G A TOPORS Nonsense_Mutation p.R796* 0.37 TCGA-NH-A5IV-01 9 32633529 32633529 A - TAF1L Frame_Shift_Del p.F683Lfs*27 0.27 TCGA-NH-A5IV-01 9 33047214 33047214 A C SMU1 3'UTR 0.20 TCGA-NH-A5IV-01 9 33467217 33467217 C T NOL6 Missense_Mutation p.R590Q 0.32 deleterious(0.01) probably_damaging(0.944) TCGA-NH-A5IV-01 9 33469303 33469303 G A NOL6 Missense_Mutation p.P255L 0.53 tolerated(0.16) benign(0.048) TCGA-NH-A5IV-01 9 33922785 33922785 G A UBAP2 Missense_Mutation p.A1055V 0.39 tolerated(0.06) unknown(0) TCGA-NH-A5IV-01 9 34371056 34371056 G A KIAA1161 Missense_Mutation p.T595M 0.44 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 9 34401028 34401028 G - FAM219A Frame_Shift_Del p.K165Sfs*3 0.30 TCGA-NH-A5IV-01 9 34648434 34648434 G A GALT Missense_Mutation p.R223H 0.07 tolerated(0.14) benign(0.005) TCGA-NH-A5IV-01 9 35736505 35736506 TG - CREB3 Frame_Shift_Del p.V301Tfs*30 0.26 TCGA-NH-A5IV-01 9 36607596 36607596 C T MELK Silent p.L198L 0.39 TCGA-NH-A5IV-01 9 37441784 37441784 A G ZBTB5 Silent p.D255D 0.07 TCGA-NH-A5IV-01 9 382521 382521 A G DOCK8 Missense_Mutation p.T872A 0.32 tolerated(0.84) benign(0) TCGA-NH-A5IV-01 9 40774481 40774481 G T ZNF658 Missense_Mutation p.T265K 0.20 tolerated(0.2) benign(0.102) TCGA-NH-A5IV-01 9 40774511 40774511 A G ZNF658 Missense_Mutation p.I255T 0.24 tolerated(0.92) benign(0) TCGA-NH-A5IV-01 9 464210 464210 G T DOCK8 Missense_Mutation p.Q2097H 0.12 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-NH-A5IV-01 9 4665011 4665011 G A PPAPDC2 3'UTR 0.30 TCGA-NH-A5IV-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.07 deleterious(0.01) possibly_damaging(0.573) TCGA-NH-A5IV-01 9 71152337 71152338 CT - TMEM252 Frame_Shift_Del p.E117Gfs*21 0.72 TCGA-NH-A5IV-01 9 72131130 72131130 C T APBA1 Missense_Mutation p.E333K 0.38 tolerated_low_confidence(0.28) benign(0.431) TCGA-NH-A5IV-01 9 72131738 72131738 G A APBA1 Missense_Mutation p.T130M 0.31 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-NH-A5IV-01 9 74300085 74300085 C T TMEM2 3'UTR 0.34 TCGA-NH-A5IV-01 9 77354684 77354684 C A TRPM6 Missense_Mutation p.W1814C 0.35 deleterious(0.03) probably_damaging(0.995) TCGA-NH-A5IV-01 9 78794550 78794550 G A PCSK5 Missense_Mutation p.G647R 0.18 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 9 84532403 84532403 C T SPATA31D5P RNA 0.42 TCGA-NH-A5IV-01 9 85624637 85624637 G A RASEF Missense_Mutation p.A293V 0.38 deleterious(0) possibly_damaging(0.706) TCGA-NH-A5IV-01 9 86618832 86618832 T - RMI1 3'UTR 0.27 TCGA-NH-A5IV-01 9 86900426 86900427 - A SLC28A3 Frame_Shift_Ins p.S494Ffs*21 0.29 TCGA-NH-A5IV-01 9 88211360 88211360 C T AGTPBP1 Missense_Mutation p.M740I 0.45 deleterious(0) possibly_damaging(0.851) TCGA-NH-A5IV-01 9 90322432 90322432 G A DAPK1 3'UTR 0.69 TCGA-NH-A5IV-01 9 90401740 90401740 G A CTSL3P RNA 0.41 TCGA-NH-A5IV-01 9 91041448 91041448 C T SPIN1 5'UTR 0.40 TCGA-NH-A5IV-01 9 93657850 93657850 C T SYK Silent p.L626L 0.39 TCGA-NH-A5IV-01 9 95177561 95177561 A G OMD Missense_Mutation p.F380S 0.38 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-NH-A5IV-01 9 95846865 95846865 G A SUSD3 Missense_Mutation p.V202M 0.45 tolerated(0.35) benign(0.021) TCGA-NH-A5IV-01 9 96051848 96051848 G A WNK2 Silent p.L1641L 0.60 TCGA-NH-A5IV-01 9 96080617 96080617 T C WNK2 3'Flank 0.40 TCGA-NH-A5IV-01 9 96418260 96418260 G A PHF2 Missense_Mutation p.A333T 0.07 deleterious(0) unknown(0) TCGA-NH-A5IV-01 9 968225 968225 C A DMRT1 3'UTR 0.47 TCGA-NH-A5IV-01 9 98209394 98209394 G A PTCH1 Missense_Mutation p.H1382Y 0.40 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-NH-A5IV-01 9 98209601 98209601 G A PTCH1 Missense_Mutation p.P1313S 0.33 tolerated_low_confidence(0.09) benign(0.007) TCGA-NH-A5IV-01 9 98218681 98218681 C T PTCH1 Silent p.A1061A 0.38 TCGA-NH-A5IV-01 9 98232106 98232106 G A PTCH1 Silent p.C612C 0.43 TCGA-NH-A5IV-01 9 99150630 99150630 G A ZNF367 Silent p.D314D 0.33 TCGA-NH-A5IV-01 X 100349634 100349634 C T TMEM35 Nonsense_Mutation p.R65* 0.41 TCGA-NH-A5IV-01 X 100881965 100881965 G A ARMCX3 3'UTR 0.23 TCGA-NH-A5IV-01 X 101138342 101138347 TATACA ATAC ZMAT1 3'UTR 0.21 TCGA-NH-A5IV-01 X 10188763 10188763 C - CLCN4 Frame_Shift_Del p.E682Sfs*10 0.27 TCGA-NH-A5IV-01 X 102004543 102004543 A - BHLHB9 Frame_Shift_Del p.N209Ifs*9 0.29 TCGA-NH-A5IV-01 X 102755403 102755403 G A RAB40A Silent p.Y94Y 0.30 TCGA-NH-A5IV-01 X 103358987 103358987 A - ZCCHC18 Frame_Shift_Del p.N63Tfs*3 0.28 TCGA-NH-A5IV-01 X 10491184 10491184 G A MID1 Missense_Mutation p.T235I 0.14 deleterious(0.01) benign(0.007) TCGA-NH-A5IV-01 X 105450375 105450375 G A MUM1L1 Missense_Mutation p.C317Y 0.18 tolerated(1) benign(0.001) TCGA-NH-A5IV-01 X 106096811 106096811 A G TBC1D8B Silent p.S728S 0.43 TCGA-NH-A5IV-01 X 106840709 106840709 C T FRMPD3 Missense_Mutation p.R567W 0.29 deleterious(0) probably_damaging(0.983) TCGA-NH-A5IV-01 X 107396915 107396915 G T ATG4A Missense_Mutation p.E390D 0.36 tolerated(1) probably_damaging(0.952) TCGA-NH-A5IV-01 X 107453217 107453217 A G COL4A6 Silent p.P177P 0.10 TCGA-NH-A5IV-01 X 108906630 108906630 G A ACSL4 Silent p.G505G 0.40 TCGA-NH-A5IV-01 X 109696238 109696238 T C RGAG1 Missense_Mutation p.M798T 0.46 tolerated(0.58) benign(0.007) TCGA-NH-A5IV-01 X 111699808 111699808 A G ZCCHC16 3'UTR 0.39 TCGA-NH-A5IV-01 X 11316908 11316908 C - AMELX Frame_Shift_Del p.Q144Sfs*45 0.31 TCGA-NH-A5IV-01 X 114524367 114524367 G A LUZP4 Silent p.P14P 0.40 TCGA-NH-A5IV-01 X 11682696 11682696 C A ARHGAP6 Missense_Mutation p.G85C 0.29 tolerated_low_confidence(0.05) benign(0.417) TCGA-NH-A5IV-01 X 11776780 11776780 C T MSL3 Intron 0.48 TCGA-NH-A5IV-01 X 11777758 11777758 A - MSL3 Intron 0.22 TCGA-NH-A5IV-01 X 11783961 11783961 T C MSL3 Intron 0.49 TCGA-NH-A5IV-01 X 118370301 118370301 G A PGRMC1 5'UTR 0.46 TCGA-NH-A5IV-01 X 118585949 118585949 T C SLC25A43 Intron 0.33 TCGA-NH-A5IV-01 X 118827103 118827103 G A SEPT6 5'UTR 0.37 TCGA-NH-A5IV-01 X 118892976 118892976 G A SOWAHD Missense_Mutation p.A116T 0.28 tolerated(0.1) benign(0.166) TCGA-NH-A5IV-01 X 118893276 118893276 C T SOWAHD Missense_Mutation p.R216C 0.48 tolerated(0.15) possibly_damaging(0.704) TCGA-NH-A5IV-01 X 118893927 118893927 C T SOWAHD 3'UTR 0.46 TCGA-NH-A5IV-01 X 119293200 119293200 G A RHOXF2 Missense_Mutation p.R120H 0.23 tolerated(0.12) benign(0.266) TCGA-NH-A5IV-01 X 120008789 120008789 C T CT47B1 Missense_Mutation p.A246T 0.35 tolerated(0.47) unknown(0) TCGA-NH-A5IV-01 X 120181621 120181621 C T GLUD2 Missense_Mutation p.A28V 0.72 tolerated_low_confidence(0.24) benign(0) TCGA-NH-A5IV-01 X 125299838 125299838 A T DCAF12L2 Missense_Mutation p.S24T 0.40 tolerated_low_confidence(0.11) benign(0.003) TCGA-NH-A5IV-01 X 125299934 125299934 C T DCAF12L2 Intron 0.50 TCGA-NH-A5IV-01 X 125686748 125686748 A T DCAF12L1 5'UTR 0.34 TCGA-NH-A5IV-01 X 12708399 12708399 C T FRMPD4 Missense_Mutation p.A256V 0.12 tolerated(0.05) benign(0.003) TCGA-NH-A5IV-01 X 128657189 128657189 G A SMARCA1 Silent p.G53G 0.33 TCGA-NH-A5IV-01 X 129059136 129059136 G A UTP14A Missense_Mutation p.V572M 0.40 tolerated(0.22) benign(0.067) TCGA-NH-A5IV-01 X 129148699 129148699 C G BCORL1 Missense_Mutation p.H651D 0.41 probably_damaging(0.997) TCGA-NH-A5IV-01 X 129299624 129299624 G A AIFM1 Missense_Mutation p.R3W 0.37 deleterious_low_confidence(0) benign(0.006) TCGA-NH-A5IV-01 X 129629177 129629177 C T RP1-274L7.1 RNA 0.14 TCGA-NH-A5IV-01 X 129771325 129771325 C T ENOX2 Missense_Mutation p.D426N 0.46 deleterious(0) probably_damaging(0.998) TCGA-NH-A5IV-01 X 132091095 132091095 C T HS6ST2 Missense_Mutation p.V230M 0.43 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 X 132161458 132161458 A G USP26 Missense_Mutation p.L264S 0.34 deleterious(0) benign(0.111) TCGA-NH-A5IV-01 X 132162323 132162323 A C USP26 Intron 0.15 TCGA-NH-A5IV-01 X 133700628 133700628 G A PLAC1 Silent p.L29L 0.39 TCGA-NH-A5IV-01 X 134126261 134126261 C T SMIM10 3'UTR 0.40 TCGA-NH-A5IV-01 X 134156028 134156028 G A FAM127C 3'UTR 0.32 TCGA-NH-A5IV-01 X 134185740 134185740 A G FAM127B 3'UTR 0.65 TCGA-NH-A5IV-01 X 135431207 135431208 - A GPR112 Frame_Shift_Ins p.N1783Kfs*3 0.32 TCGA-NH-A5IV-01 X 135593055 135593055 G A HTATSF1 Missense_Mutation p.R384H 0.39 deleterious(0.03) benign(0.008) TCGA-NH-A5IV-01 X 135762918 135762919 - T ARHGEF6 Frame_Shift_Ins p.T559Nfs*7 0.30 TCGA-NH-A5IV-01 X 136649872 136649872 G A ZIC3 Missense_Mutation p.R341H 0.37 deleterious(0) probably_damaging(0.963) TCGA-NH-A5IV-01 X 138644031 138644031 G A F9 Missense_Mutation p.C396Y 0.11 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 X 138733942 138733942 C T MCF2 5'UTR 0.07 TCGA-NH-A5IV-01 X 139585868 139585868 C T SOX3 3'UTR 0.39 TCGA-NH-A5IV-01 X 139586514 139586514 C T SOX3 Missense_Mutation p.A238T 0.38 tolerated(0.41) probably_damaging(0.948) TCGA-NH-A5IV-01 X 139796000 139796000 C - LINC00632 3'UTR 0.55 TCGA-NH-A5IV-01 X 139865636 139865636 G T CDR1 3'UTR 0.06 TCGA-NH-A5IV-01 X 139866279 139866279 T C CDR1 Missense_Mutation p.M85V 0.39 tolerated(1) benign(0) TCGA-NH-A5IV-01 X 140270790 140270790 G T LDOC1 Missense_Mutation p.D139E 0.38 tolerated_low_confidence(0.46) unknown(0) TCGA-NH-A5IV-01 X 140983095 140983095 G A MAGEC3 Missense_Mutation p.R317Q 0.10 tolerated(0.06) benign(0.238) TCGA-NH-A5IV-01 X 140984750 140984750 C A MAGEC3 Silent p.I402I 0.37 TCGA-NH-A5IV-01 X 144906444 144906444 A G SLITRK2 Missense_Mutation p.E834G 0.06 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 X 144906702 144906710 TTTTTTTTC - SLITRK2 3'UTR 0.11 TCGA-NH-A5IV-01 X 144911220 144911220 A T TMEM257 3'UTR 0.39 TCGA-NH-A5IV-01 X 145076372 145076372 C T MIR888 RNA 0.29 TCGA-NH-A5IV-01 X 1471267 1471267 C T IL3RA Missense_Mutation p.R162C 0.42 deleterious(0.02) possibly_damaging(0.816) TCGA-NH-A5IV-01 X 148068937 148068937 A G AFF2 Missense_Mutation p.I1222V 0.38 tolerated(0.43) benign(0.007) TCGA-NH-A5IV-01 X 148586721 148586721 C T IDS 5'UTR 0.42 TCGA-NH-A5IV-01 X 148627078 148627078 G - CXorf40A Intron 0.27 TCGA-NH-A5IV-01 X 148797422 148797422 C - MAGEA11 Frame_Shift_Del p.I94Sfs*13 0.29 TCGA-NH-A5IV-01 X 150840980 150840980 A - PASD1 Frame_Shift_Del p.N589Tfs*62 0.26 TCGA-NH-A5IV-01 X 150911902 150911902 C T CNGA2 Silent p.Y309Y 0.37 TCGA-NH-A5IV-01 X 151870124 151870124 C T MAGEA6 Silent p.L272L 0.39 TCGA-NH-A5IV-01 X 151997144 151997144 C T CETN2 Silent p.S122S 0.32 TCGA-NH-A5IV-01 X 152612604 152612604 C T ZNF275 Missense_Mutation p.A154V 0.42 tolerated(0.35) benign(0.016) TCGA-NH-A5IV-01 X 152807233 152807233 G A ATP2B3 Silent p.T171T 0.34 TCGA-NH-A5IV-01 X 152808604 152808604 G T ATP2B3 Missense_Mutation p.E298D 0.09 tolerated(0.25) benign(0.261) TCGA-NH-A5IV-01 X 152956861 152956861 C T SLC6A8 Missense_Mutation p.T166M 0.39 deleterious(0.03) possibly_damaging(0.602) TCGA-NH-A5IV-01 X 152986441 152986441 A - BCAP31 Intron 0.17 TCGA-NH-A5IV-01 X 153068707 153068708 CG - PDZD4 3'UTR 0.32 TCGA-NH-A5IV-01 X 153176014 153176014 C T ARHGAP4 Missense_Mutation p.R663Q 0.37 tolerated(0.62) benign(0.037) TCGA-NH-A5IV-01 X 153219646 153219646 G - HCFC1 Frame_Shift_Del p.Q1402Rfs*39 0.26 TCGA-NH-A5IV-01 X 153219712 153219712 C T HCFC1 Missense_Mutation p.A1380T 0.35 tolerated_low_confidence(0.44) benign(0) TCGA-NH-A5IV-01 X 153588941 153588941 C T FLNA Silent p.G1074G 0.31 TCGA-NH-A5IV-01 X 153665492 153665492 G A GDI1 5'UTR 0.36 TCGA-NH-A5IV-01 X 15373293 15373293 A G FIGF Missense_Mutation p.I207T 0.25 deleterious(0.02) benign(0.097) TCGA-NH-A5IV-01 X 153762317 153762317 G T G6PD Missense_Mutation p.L265I 0.51 tolerated(1) benign(0.323) TCGA-NH-A5IV-01 X 154293626 154293626 C T MTCP1 3'UTR 0.17 TCGA-NH-A5IV-01 X 15444040 15444040 G A PIR Missense_Mutation p.P185L 0.34 deleterious(0.03) possibly_damaging(0.55) TCGA-NH-A5IV-01 X 154467081 154467081 A G VBP1 Silent p.V184V 0.38 TCGA-NH-A5IV-01 X 155004153 155004153 C T SPRY3 Missense_Mutation p.A207V 0.16 deleterious(0) probably_damaging(0.967) TCGA-NH-A5IV-01 X 1584752 1584752 G A P2RY8 Missense_Mutation p.R234C 0.28 deleterious(0) probably_damaging(0.995) TCGA-NH-A5IV-01 X 1585046 1585046 G A P2RY8 Missense_Mutation p.R136C 0.36 deleterious(0.03) benign(0.062) TCGA-NH-A5IV-01 X 17080648 17080648 G A REPS2 Missense_Mutation p.R401Q 0.07 tolerated(0.19) benign(0.412) TCGA-NH-A5IV-01 X 17745940 17745940 T C NHS Silent p.G1217G 0.39 TCGA-NH-A5IV-01 X 18836213 18836213 G A PPEF1 Missense_Mutation p.R484Q 0.36 deleterious(0.04) benign(0.185) TCGA-NH-A5IV-01 X 18912416 18912416 G A PHKA2 Missense_Mutation p.T1148M 0.40 deleterious(0) benign(0.204) TCGA-NH-A5IV-01 X 19017287 19017287 C A GPR64 Missense_Mutation p.R814L 0.38 deleterious(0.02) possibly_damaging(0.903) TCGA-NH-A5IV-01 X 20081618 20081618 G A MAP7D2 Nonsense_Mutation p.R96* 0.41 TCGA-NH-A5IV-01 X 21670599 21670599 C T CNKSR2 Missense_Mutation p.S1022F 0.10 deleterious(0.04) possibly_damaging(0.598) TCGA-NH-A5IV-01 X 21675417 21675417 G A KLHL34 Missense_Mutation p.R164W 0.36 deleterious(0.02) possibly_damaging(0.646) TCGA-NH-A5IV-01 X 22051083 22051083 A - PHEX 5'UTR 0.28 TCGA-NH-A5IV-01 X 2406651 2406651 A C ZBED1 3'UTR 0.43 TCGA-NH-A5IV-01 X 2408427 2408427 C T ZBED1 Missense_Mutation p.V112I 0.39 tolerated(0.47) benign(0.014) TCGA-NH-A5IV-01 X 26157868 26157868 T C MAGEB18 Missense_Mutation p.Y256H 0.34 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 X 26212441 26212441 G T MAGEB6 Missense_Mutation p.G160C 0.46 deleterious(0.01) possibly_damaging(0.766) TCGA-NH-A5IV-01 X 2732489 2732489 T C XG 3'UTR 0.37 TCGA-NH-A5IV-01 X 2825221 2825221 A - ARSD 3'UTR 0.25 TCGA-NH-A5IV-01 X 2825515 2825515 G A ARSD Missense_Mutation p.R527W 0.40 deleterious(0.02) benign(0.053) TCGA-NH-A5IV-01 X 29301198 29301198 T C IL1RAPL1 Missense_Mutation p.W76R 0.41 deleterious(0) probably_damaging(0.996) TCGA-NH-A5IV-01 X 299371 299371 G A PPP2R3B Silent p.A515A 0.47 TCGA-NH-A5IV-01 X 299588 299588 G A PPP2R3B Silent p.N465N 0.39 TCGA-NH-A5IV-01 X 30327226 30327226 C T NR0B1 Silent p.T85T 0.43 TCGA-NH-A5IV-01 X 306297 306297 G A PPP2R3B Silent p.H330H 0.35 TCGA-NH-A5IV-01 X 30745651 30745651 G A GK Missense_Mutation p.G545R 0.38 tolerated(0.35) possibly_damaging(0.758) TCGA-NH-A5IV-01 X 30872571 30872571 G A TAB3 Missense_Mutation p.T404M 0.45 deleterious(0) possibly_damaging(0.732) TCGA-NH-A5IV-01 X 34148110 34148110 T C FAM47A Silent p.G762G 0.40 TCGA-NH-A5IV-01 X 34648325 34648325 G A TMEM47 3'UTR 0.37 TCGA-NH-A5IV-01 X 34961547 34961547 G A FAM47B Missense_Mutation p.R200H 0.36 tolerated(0.35) benign(0.009) TCGA-NH-A5IV-01 X 37431309 37431309 G - LANCL3 Frame_Shift_Del p.L65Ffs*129 0.23 TCGA-NH-A5IV-01 X 38665745 38665745 G A MID1IP1 3'UTR 0.34 TCGA-NH-A5IV-01 X 39931872 39931872 G A BCOR Silent p.G909G 0.37 TCGA-NH-A5IV-01 X 40522352 40522352 G A MED14 Missense_Mutation p.A1170V 0.36 deleterious(0) probably_damaging(0.979) TCGA-NH-A5IV-01 X 41333577 41333577 G A NYX Missense_Mutation p.A291T 0.38 tolerated(0.43) benign(0.004) TCGA-NH-A5IV-01 X 41586084 41586084 G A GPR82 5'UTR 0.50 TCGA-NH-A5IV-01 X 44094577 44094577 A G EFHC2 Missense_Mutation p.V466A 0.37 deleterious(0) probably_damaging(0.98) TCGA-NH-A5IV-01 X 46713436 46713436 G A RP2 Missense_Mutation p.V210I 0.33 tolerated(0.24) benign(0) TCGA-NH-A5IV-01 X 47430756 47430756 T C ARAF Missense_Mutation p.L574P 0.08 deleterious(0) possibly_damaging(0.858) TCGA-NH-A5IV-01 X 47487616 47487616 G A CFP Silent p.G96G 0.43 TCGA-NH-A5IV-01 X 47500645 47500645 A G ELK1 Missense_Mutation p.Y66H 0.43 deleterious(0) probably_damaging(0.999) TCGA-NH-A5IV-01 X 47835389 47835389 C T ZNF182 3'UTR 0.27 TCGA-NH-A5IV-01 X 47976486 47976486 G A SSX6 3'Flank 0.39 TCGA-NH-A5IV-01 X 48117987 48117987 C T SSX1 Silent p.L67L 0.39 TCGA-NH-A5IV-01 X 48337008 48337008 C G FTSJ1 Silent p.G65G 0.09 TCGA-NH-A5IV-01 X 48339881 48339881 G A FTSJ1 Missense_Mutation p.C179Y 0.46 deleterious(0.02) possibly_damaging(0.571) TCGA-NH-A5IV-01 X 48371067 48371067 C A PORCN Missense_Mutation p.P216T 0.40 tolerated(0.09) benign(0.14) TCGA-NH-A5IV-01 X 48372958 48372958 A G PORCN Silent p.S297S 0.36 TCGA-NH-A5IV-01 X 48549678 48549678 C A WAS 3'UTR 0.29 TCGA-NH-A5IV-01 X 48565855 48565855 G A SUV39H1 Missense_Mutation p.R378H 0.43 deleterious(0.03) possibly_damaging(0.512) TCGA-NH-A5IV-01 X 48652420 48652420 A G GATA1 Missense_Mutation p.Y364C 0.23 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-NH-A5IV-01 X 48674638 48674638 G A HDAC6 Silent p.P528P 0.41 TCGA-NH-A5IV-01 X 48681195 48681195 C T HDAC6 Missense_Mutation p.R835W 0.28 deleterious(0.03) benign(0.057) TCGA-NH-A5IV-01 X 48755722 48755722 C A PQBP1 5'UTR 0.39 TCGA-NH-A5IV-01 X 48759615 48759615 G A PQBP1 Missense_Mutation p.R133Q 0.42 tolerated(0.58) benign(0.442) TCGA-NH-A5IV-01 X 48826160 48826160 C T KCND1 Nonsense_Mutation p.W173* 0.11 TCGA-NH-A5IV-01 X 48834658 48834658 G T GRIPAP1 Intron 0.38 TCGA-NH-A5IV-01 X 49020324 49020324 A G MAGIX Intron 0.29 TCGA-NH-A5IV-01 X 50658965 50658965 C T BMP15 Silent p.N179N 0.42 TCGA-NH-A5IV-01 X 51075829 51075829 A G NUDT10 Silent p.K4K 0.07 TCGA-NH-A5IV-01 X 51150811 51150811 C T CXorf67 Missense_Mutation p.R315C 0.14 tolerated(0.09) possibly_damaging(0.537) TCGA-NH-A5IV-01 X 54224574 54224574 C T WNK3 3'UTR 0.47 TCGA-NH-A5IV-01 X 64754531 64754531 G A LAS1L Missense_Mutation p.A22V 0.38 deleterious_low_confidence(0) benign(0.386) TCGA-NH-A5IV-01 X 65242699 65242699 C T VSIG4 Missense_Mutation p.V316I 0.31 tolerated(0.23) benign(0.056) TCGA-NH-A5IV-01 X 65413406 65413406 G A HEPH Missense_Mutation p.R486Q 0.35 tolerated(0.44) benign(0.01) TCGA-NH-A5IV-01 X 68749859 68749859 G - FAM155B 3'UTR 0.30 TCGA-NH-A5IV-01 X 69282411 69282411 C T OTUD6A Missense_Mutation p.R13C 0.37 deleterious(0) probably_damaging(0.991) TCGA-NH-A5IV-01 X 69497913 69497913 C A ARR3 Intron 0.38 TCGA-NH-A5IV-01 X 69623776 69623776 C T KIF4A Silent p.S894S 0.45 TCGA-NH-A5IV-01 X 69715280 69715282 ATT - DLG3 In_Frame_Del p.Y601del 0.37 TCGA-NH-A5IV-01 X 70390050 70390050 C T NLGN3 3'UTR 0.33 TCGA-NH-A5IV-01 X 70462936 70462936 T C ZMYM3 Splice_Site p.X1145_splice 0.45 TCGA-NH-A5IV-01 X 70787404 70787404 G T OGT Nonsense_Mutation p.G882* 0.33 TCGA-NH-A5IV-01 X 70823956 70823956 G A ACRC Missense_Mutation p.D277N 0.43 unknown(0) TCGA-NH-A5IV-01 X 71349737 71349737 G T RGAG4 Missense_Mutation p.R552S 0.05 deleterious_low_confidence(0.02) unknown(0) TCGA-NH-A5IV-01 X 71350690 71350690 G - RGAG4 Frame_Shift_Del p.P234Hfs*67 0.28 TCGA-NH-A5IV-01 X 71358980 71358980 A G NHSL2 Missense_Mutation p.S528G 0.51 deleterious(0.02) possibly_damaging(0.508) TCGA-NH-A5IV-01 X 7175399 7175399 G A STS Missense_Mutation p.R90Q 0.39 deleterious(0) probably_damaging(1) TCGA-NH-A5IV-01 X 72297936 72297936 C T PABPC1L2A 3'UTR 0.19 TCGA-NH-A5IV-01 X 73524127 73524127 G A ZCCHC13 Missense_Mutation p.C9Y 0.33 deleterious(0.02) benign(0.081) TCGA-NH-A5IV-01 X 73524264 73524264 C T ZCCHC13 Missense_Mutation p.R55C 0.42 deleterious(0) benign(0.047) TCGA-NH-A5IV-01 X 75648358 75648358 G A MAGEE1 Missense_Mutation p.R12H 0.40 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-NH-A5IV-01 X 75648848 75648848 C T MAGEE1 Silent p.S175S 0.35 TCGA-NH-A5IV-01 X 75648934 75648934 C A MAGEE1 Missense_Mutation p.P204H 0.42 tolerated_low_confidence(0.08) benign(0.43) TCGA-NH-A5IV-01 X 76763888 76763888 G A ATRX Missense_Mutation p.R2474C 0.38 probably_damaging(0.977) TCGA-NH-A5IV-01 X 76938762 76938762 T G ATRX Silent p.T662T 0.04 TCGA-NH-A5IV-01 X 77914129 77914129 G T ZCCHC5 5'UTR 0.41 TCGA-NH-A5IV-01 X 83723975 83723975 G T HDX Missense_Mutation p.D252E 0.42 tolerated(0.78) probably_damaging(0.99) TCGA-NH-A5IV-01 X 8768248 8768248 A G FAM9A Intron 0.11 TCGA-NH-A5IV-01 X 8995955 8995955 C A FAM9B Missense_Mutation p.R149I 0.38 tolerated(0.09) probably_damaging(0.995) TCGA-NH-A5IV-01 X 91090437 91090437 C G PCDH11X 5'UTR 0.44 TCGA-NH-A5IV-01 X 91138079 91138079 A - PCDH11X Intron 0.30 TCGA-NH-A5IV-01 X 99936329 99936329 T C SYTL4 Missense_Mutation p.S485G 0.48 tolerated(0.29) benign(0.001) TCGA-NH-A6GA-01 10 115804820 115804820 G A ADRB1 Missense_Mutation p.R310Q 0.40 deleterious(0.01) possibly_damaging(0.694) TCGA-NH-A6GA-01 10 128824655 128824655 C T DOCK1 Missense_Mutation p.R510W 0.43 deleterious(0) probably_damaging(0.978) TCGA-NH-A6GA-01 10 25684892 25684892 G T GPR158 Missense_Mutation p.C354F 0.35 deleterious(0.03) probably_damaging(0.977) TCGA-NH-A6GA-01 10 43604667 43604667 C T RET Nonsense_Mutation p.R418* 0.38 TCGA-NH-A6GA-01 10 55566445 55566445 T C PCDH15 Missense_Mutation p.N1647S 0.43 tolerated_low_confidence(0.92) benign(0) TCGA-NH-A6GA-01 10 72358086 72358086 C T PRF1 Missense_Mutation p.R464Q 0.33 tolerated(0.56) benign(0.015) TCGA-NH-A6GA-01 10 79595623 79595623 G A DLG5 Nonsense_Mutation p.R499* 0.34 TCGA-NH-A6GA-01 10 88281515 88281515 C A WAPAL 5'UTR 0.28 TCGA-NH-A6GA-01 10 94826026 94826026 G A CYP26C1 Missense_Mutation p.R392H 0.16 deleterious(0) possibly_damaging(0.602) TCGA-NH-A6GA-01 11 105782776 105782776 T A GRIA4 Intron 0.05 TCGA-NH-A6GA-01 11 10624696 10624696 G A MRVI1 Nonsense_Mutation p.R616* 0.46 TCGA-NH-A6GA-01 11 110036368 110036368 T G ZC3H12C Missense_Mutation p.L853R 0.30 deleterious(0) probably_damaging(0.998) TCGA-NH-A6GA-01 11 130343427 130343427 G A ADAMTS15 Missense_Mutation p.C855Y 0.45 deleterious(0) probably_damaging(1) TCGA-NH-A6GA-01 11 132812983 132812983 C G OPCML Missense_Mutation p.G2A 0.39 deleterious_low_confidence(0.04) probably_damaging(0.927) TCGA-NH-A6GA-01 11 56058254 56058254 G T OR8H1 Silent p.G95G 0.36 TCGA-NH-A6GA-01 11 62545529 62545529 G A TAF6L Missense_Mutation p.R105Q 0.42 deleterious(0.03) possibly_damaging(0.834) TCGA-NH-A6GA-01 11 63679363 63679363 G A RCOR2 Silent p.L516L 0.36 TCGA-NH-A6GA-01 11 6816949 6816949 C A OR6A2 5'UTR 0.32 TCGA-NH-A6GA-01 11 77378474 77378474 G A RSF1 Nonsense_Mutation p.R1272* 0.06 TCGA-NH-A6GA-01 11 8159986 8159986 A G RIC3 Intron 0.33 TCGA-NH-A6GA-01 11 92088512 92088512 C A FAT3 Silent p.I1078I 0.38 TCGA-NH-A6GA-01 12 117287121 117287121 C T RNFT2 Silent p.H401H 0.36 TCGA-NH-A6GA-01 12 120222071 120222071 T A CIT Intron 0.09 TCGA-NH-A6GA-01 12 120805842 120805842 G A MSI1 Missense_Mutation p.A79V 0.35 tolerated(0.14) possibly_damaging(0.65) TCGA-NH-A6GA-01 12 13224220 13224220 C T KIAA1467 Missense_Mutation p.R472C 0.37 deleterious(0.01) benign(0.28) TCGA-NH-A6GA-01 12 20522590 20522590 G A PDE3A Silent p.A124A 0.44 TCGA-NH-A6GA-01 12 22218245 22218245 G A CMAS Silent p.%3D 0.41 TCGA-NH-A6GA-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.39 deleterious(0) benign(0.361) TCGA-NH-A6GA-01 12 2786966 2786966 C A CACNA1C Missense_Mutation p.A1723D 0.04 tolerated(0.69) benign(0.004) TCGA-NH-A6GA-01 12 52946726 52946726 G A KRT71 Missense_Mutation p.R46W 0.43 deleterious(0.02) benign(0.028) TCGA-NH-A6GA-01 12 7069993 7069993 C T PTPN6 Missense_Mutation p.T614I 0.39 unknown(0) TCGA-NH-A6GA-01 12 75445071 75445071 G A KCNC2 Silent p.F238F 0.04 TCGA-NH-A6GA-01 13 20024243 20024243 C T TPTE2 Missense_Mutation p.V316I 0.38 tolerated(1) benign(0.02) TCGA-NH-A6GA-01 13 20763148 20763148 G A GJB2 Silent p.F191F 0.48 TCGA-NH-A6GA-01 13 31491581 31491581 G T MEDAG Missense_Mutation p.R107M 0.08 deleterious(0) benign(0.371) TCGA-NH-A6GA-01 13 32313752 32313752 G T RXFP2 Translation_Start_Site p.M1? 0.04 tolerated_low_confidence(0.5) benign(0) TCGA-NH-A6GA-01 13 84455701 84455701 C T SLITRK1 5'UTR 0.27 TCGA-NH-A6GA-01 14 100317312 100317312 C A EML1 Silent p.R64R 0.49 TCGA-NH-A6GA-01 14 50246473 50246473 G C KLHDC2 Missense_Mutation p.R241T 0.41 deleterious(0.02) probably_damaging(0.927) TCGA-NH-A6GA-01 14 68274306 68274306 A G ZFYVE26 Missense_Mutation p.L232P 0.30 tolerated(0.36) benign(0.003) TCGA-NH-A6GA-01 14 74203729 74203729 C T ELMSAN1 Missense_Mutation p.R574Q 0.38 tolerated(0.07) possibly_damaging(0.509) TCGA-NH-A6GA-01 15 42264748 42264748 C T EHD4 5'UTR 0.47 TCGA-NH-A6GA-01 15 45409295 45409295 G A DUOXA2 Silent p.A187A 0.37 TCGA-NH-A6GA-01 15 51201077 51201077 G A AP4E1 Silent p.S34S 0.04 TCGA-NH-A6GA-01 15 53049699 53049699 A T ONECUT1 3'UTR 0.12 TCGA-NH-A6GA-01 15 82422882 82422882 G A EFTUD1 Silent p.F1065F 0.05 TCGA-NH-A6GA-01 15 84582074 84582074 C T ADAMTSL3 Missense_Mutation p.T644M 0.37 tolerated(0.16) benign(0.007) TCGA-NH-A6GA-01 16 2138600 2138600 G A TSC2 Missense_Mutation p.E1805K 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-NH-A6GA-01 16 28498794 28498794 A C CLN3 Missense_Mutation p.V148G 0.37 tolerated(0.14) probably_damaging(0.99) TCGA-NH-A6GA-01 16 3405967 3405967 G T OR2C1 Missense_Mutation p.L9F 0.40 tolerated(0.78) benign(0.001) TCGA-NH-A6GA-01 16 48250121 48250121 G A ABCC11 Silent p.C285C 0.38 TCGA-NH-A6GA-01 17 15211982 15211982 G A TEKT3 Missense_Mutation p.R419C 0.25 tolerated(0.07) benign(0.077) TCGA-NH-A6GA-01 17 30594903 30594903 G T RHBDL3 Intron 0.37 TCGA-NH-A6GA-01 17 42882687 42882687 G A GJC1 Missense_Mutation p.R167W 0.43 deleterious(0) benign(0.336) TCGA-NH-A6GA-01 17 46654236 46654236 A G HOXB4 Missense_Mutation p.S202P 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-NH-A6GA-01 17 51901626 51901626 G A KIF2B Missense_Mutation p.R411Q 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A6GA-01 17 54672008 54672008 C T NOG Missense_Mutation p.R142W 0.33 deleterious(0) probably_damaging(0.995) TCGA-NH-A6GA-01 17 70120162 70120163 - CC SOX9 Frame_Shift_Ins p.G390Rfs*14 0.38 TCGA-NH-A6GA-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.62 deleterious(0) probably_damaging(1) TCGA-NH-A6GA-01 19 17416722 17416722 C T MRPL34 Silent p.S7S 0.41 TCGA-NH-A6GA-01 19 20728571 20728571 C T ZNF737 Silent p.Q146Q 0.38 TCGA-NH-A6GA-01 19 2987750 2987750 G A TLE6 Missense_Mutation p.C196Y 0.09 tolerated(1) possibly_damaging(0.461) TCGA-NH-A6GA-01 19 37677822 37677822 C T ZNF585B Missense_Mutation p.R206K 0.40 tolerated(0.12) benign(0.065) TCGA-NH-A6GA-01 19 3779611 3779611 T G MATK Missense_Mutation p.M284L 0.12 tolerated(1) benign(0.001) TCGA-NH-A6GA-01 19 53886049 53886049 C T ZNF525 3'UTR 0.54 TCGA-NH-A6GA-01 19 5456201 5456201 C T ZNRF4 Silent p.H233H 0.44 TCGA-NH-A6GA-01 19 5616194 5616194 T G SAFB2 Missense_Mutation p.E164D 0.11 tolerated(0.24) benign(0.012) TCGA-NH-A6GA-01 19 57089603 57089603 C A ZNF470 Missense_Mutation p.F602L 0.14 deleterious(0) probably_damaging(0.989) TCGA-NH-A6GA-01 19 58774160 58774160 C T ZNF544 3'UTR 0.32 TCGA-NH-A6GA-01 1 109853086 109853086 G C SORT1 3'UTR 0.15 TCGA-NH-A6GA-01 1 1169796 1169796 G A B3GALT6 3'UTR 0.61 TCGA-NH-A6GA-01 1 153654187 153654187 C A NPR1 Missense_Mutation p.T348N 0.34 tolerated(0.28) benign(0.393) TCGA-NH-A6GA-01 1 155148069 155148070 CT - TRIM46 Frame_Shift_Del p.S92Pfs*15 0.36 TCGA-NH-A6GA-01 1 185062310 185062310 T G RNF2 Silent p.A122A 0.54 TCGA-NH-A6GA-01 1 185259828 185259828 C A SWT1 Missense_Mutation p.R866S 0.11 tolerated(0.41) benign(0.26) TCGA-NH-A6GA-01 1 197065151 197065151 G A ASPM Silent p.F2988F 0.28 TCGA-NH-A6GA-01 1 202288330 202288330 G A LGR6 Missense_Mutation p.V967M 0.03 deleterious_low_confidence(0.02) possibly_damaging(0.623) TCGA-NH-A6GA-01 1 20518258 20518258 G A UBXN10 3'UTR 0.61 TCGA-NH-A6GA-01 1 223568291 223568291 G A C1orf65 Missense_Mutation p.A492T 0.31 tolerated(0.06) possibly_damaging(0.492) TCGA-NH-A6GA-01 1 225555640 225555640 G C DNAH14 Missense_Mutation p.S3982T 0.25 benign(0.096) TCGA-NH-A6GA-01 1 228412258 228412258 C A OBSCN Missense_Mutation p.Q1010K 0.56 benign(0.016) TCGA-NH-A6GA-01 1 229568322 229568322 G A ACTA1 Silent p.Y145Y 0.68 TCGA-NH-A6GA-01 1 235945240 235945240 C T LYST Silent p.L1670L 0.28 TCGA-NH-A6GA-01 1 36883847 36883847 G A OSCP1 Missense_Mutation p.R345W 0.06 deleterious(0.02) possibly_damaging(0.655) TCGA-NH-A6GA-01 20 3145450 3145450 C T LZTS3 Missense_Mutation p.V558M 0.42 tolerated(0.24) benign(0.001) TCGA-NH-A6GA-01 20 31603252 31603252 G A BPIFB2 Missense_Mutation p.A156T 0.41 tolerated(0.54) benign(0.045) TCGA-NH-A6GA-01 20 31627262 31627262 C T BPIFB6 Missense_Mutation p.T337I 0.36 deleterious(0) probably_damaging(0.991) TCGA-NH-A6GA-01 20 43547862 43547862 G A PABPC1L Missense_Mutation p.G228S 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-NH-A6GA-01 20 44672293 44672293 G A SLC12A5 Missense_Mutation p.R443H 0.38 deleterious(0) probably_damaging(0.954) TCGA-NH-A6GA-01 20 62597542 62597542 G A ZNF512B Missense_Mutation p.S329L 0.05 tolerated(0.12) benign(0.265) TCGA-NH-A6GA-01 21 34947898 34947898 A T SON Intron 0.04 TCGA-NH-A6GA-01 21 42807927 42807927 T G MX1 Missense_Mutation p.L90R 0.28 deleterious(0) probably_damaging(0.995) TCGA-NH-A6GA-01 22 25577779 25577779 G A KIAA1671 Missense_Mutation p.A1730T 0.76 deleterious(0) probably_damaging(0.955) TCGA-NH-A6GA-01 2 168103444 168103444 C A XIRP2 Missense_Mutation p.L1848I 0.09 probably_damaging(0.923) TCGA-NH-A6GA-01 2 185798405 185798405 G T ZNF804A Nonsense_Mutation p.E111* 0.03 TCGA-NH-A6GA-01 2 27001450 27001450 G A SLC35F6 3'UTR 0.43 TCGA-NH-A6GA-01 2 33748980 33748980 G T RASGRP3 Missense_Mutation p.C184F 0.11 deleterious(0) possibly_damaging(0.55) TCGA-NH-A6GA-01 2 54342854 54342854 C T ACYP2 Missense_Mutation p.L7F 0.33 deleterious(0.04) possibly_damaging(0.903) TCGA-NH-A6GA-01 2 74596266 74596266 C T DCTN1 Missense_Mutation p.D554N 0.11 tolerated(0.06) probably_damaging(1) TCGA-NH-A6GA-01 3 182662811 182662811 G A DCUN1D1 3'UTR 0.05 TCGA-NH-A6GA-01 3 33194482 33194482 C T SUSD5 Missense_Mutation p.G548R 0.70 tolerated(0.25) benign(0.091) TCGA-NH-A6GA-01 3 52818323 52818323 C T ITIH1 Missense_Mutation p.R413C 0.73 tolerated(0.19) probably_damaging(0.932) TCGA-NH-A6GA-01 3 58368279 58368279 G T PXK Missense_Mutation p.L80F 0.70 deleterious(0) possibly_damaging(0.566) TCGA-NH-A6GA-01 3 9876846 9876846 G A TTLL3 Silent p.S807S 0.65 TCGA-NH-A6GA-01 4 146071726 146071726 G T OTUD4 Missense_Mutation p.Q335K 0.04 tolerated(0.21) benign(0.221) TCGA-NH-A6GA-01 4 8584309 8584309 C G GPR78 Silent p.T240T 0.12 TCGA-NH-A6GA-01 5 107216765 107216765 T C FBXL17 Silent p.R646R 0.36 TCGA-NH-A6GA-01 5 112164586 112164586 C T APC Nonsense_Mutation p.R554* 0.42 TCGA-NH-A6GA-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.35 TCGA-NH-A6GA-01 5 140502505 140502505 G A PCDHB4 Missense_Mutation p.E309K 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-NH-A6GA-01 5 491924 491924 G A SLC9A3 Silent p.T158T 0.10 TCGA-NH-A6GA-01 5 79041266 79041266 C T CMYA5 Silent p.A3652A 0.35 TCGA-NH-A6GA-01 5 90012413 90012413 G A GPR98 Missense_Mutation p.R3105Q 0.38 possibly_damaging(0.885) TCGA-NH-A6GA-01 6 100895160 100895160 C T SIM1 Missense_Mutation p.V328I 0.75 tolerated(0.07) possibly_damaging(0.904) TCGA-NH-A6GA-01 6 55266823 55266823 G T GFRAL 3'UTR 0.53 TCGA-NH-A6GA-01 6 76022876 76022876 T C FILIP1 Missense_Mutation p.N891S 0.59 deleterious(0.03) benign(0.013) TCGA-NH-A6GA-01 7 100225547 100225547 C G TFR2 Missense_Mutation p.E530Q 0.03 deleterious(0.01) benign(0.04) TCGA-NH-A6GA-01 7 129668810 129668810 G A ZC3HC1 Missense_Mutation p.R185C 0.30 deleterious(0) probably_damaging(0.988) TCGA-NH-A6GA-01 7 136700244 136700244 G A CHRM2 Missense_Mutation p.R211Q 0.30 tolerated(0.23) benign(0.015) TCGA-NH-A6GA-01 7 152132948 152132948 C T KMT2C 5'UTR 0.04 TCGA-NH-A6GA-01 7 157178346 157178346 C T DNAJB6 Intron 0.05 TCGA-NH-A6GA-01 7 31132267 31132267 G T ADCYAP1R1 Missense_Mutation p.V322L 0.32 tolerated(0.07) benign(0.048) TCGA-NH-A6GA-01 7 43916548 43916548 G C URGCP Silent p.L838L 0.09 TCGA-NH-A6GA-01 8 22424199 22424199 C T SORBS3 Silent p.G372G 0.07 TCGA-NH-A6GA-01 8 31498088 31498088 C T NRG1 Silent p.C49C 0.79 TCGA-NH-A6GA-01 8 3267090 3267090 G A CSMD1 Silent p.P533P 0.61 TCGA-NH-A6GA-01 9 95060567 95060567 C G NOL8 Missense_Mutation p.W1142S 0.67 deleterious(0) probably_damaging(1) TCGA-NH-A6GA-01 X 134990701 134990701 G A SAGE1 Missense_Mutation p.V456I 0.81 tolerated(0.42) benign(0.042) TCGA-NH-A6GA-01 X 140984793 140984793 G T MAGEC3 Missense_Mutation p.D417Y 0.77 deleterious(0.04) benign(0) TCGA-NH-A6GA-01 X 142795289 142795289 G T SPANXN2 Nonsense_Mutation p.S130* 0.52 TCGA-NH-A6GA-01 X 142795328 142795328 G T SPANXN2 Nonsense_Mutation p.S117* 0.12 TCGA-NH-A6GA-01 X 63411366 63411366 G A AMER1 Nonsense_Mutation p.R601* 0.72 TCGA-NH-A6GA-01 X 91132397 91132397 G A PCDH11X Silent p.T386T 0.08 TCGA-NH-A6GB-01 10 118084846 118084847 - C CCDC172 Frame_Shift_Ins p.I38Hfs*2 0.22 TCGA-NH-A6GB-01 10 118969155 118969155 G A KCNK18 Missense_Mutation p.R167Q 0.37 tolerated(0.27) benign(0.005) TCGA-NH-A6GB-01 10 123923404 123923404 G A TACC2 Intron 0.37 TCGA-NH-A6GB-01 10 17363316 17363316 A G ST8SIA6 Missense_Mutation p.L253P 0.25 tolerated(0.3) benign(0.002) TCGA-NH-A6GB-01 10 409218 409218 G A DIP2C Silent p.D837D 0.30 TCGA-NH-A6GB-01 10 54531270 54531270 G A MBL2 Silent p.G42G 0.27 TCGA-NH-A6GB-01 11 112050200 112050200 G T BCO2 Missense_Mutation p.K96N 0.06 tolerated(0.64) benign(0.044) TCGA-NH-A6GB-01 11 114453087 114453091 ACAGG - NXPE4 Frame_Shift_Del p.P250Rfs*9 0.33 TCGA-NH-A6GB-01 11 119549268 119549268 C T PVRL1 Missense_Mutation p.R96H 0.13 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 11 1251273 1251273 C G MUC5B Missense_Mutation p.P420R 0.30 unknown(0) TCGA-NH-A6GB-01 11 14157054 14157054 C T RNA5SP332 3'Flank 0.25 TCGA-NH-A6GB-01 11 25100329 25100329 A G LUZP2 3'UTR 0.14 TCGA-NH-A6GB-01 11 33612941 33612941 C T KIAA1549L Silent p.T1278T 0.34 TCGA-NH-A6GB-01 11 6585586 6585587 TG - DNHD1 Frame_Shift_Del p.F3438Wfs*33 0.21 TCGA-NH-A6GB-01 11 73357612 73357612 C G PLEKHB1 5'UTR 0.39 TCGA-NH-A6GB-01 11 7960472 7960472 G C OR10A3 Missense_Mutation p.A199G 0.28 deleterious(0.04) possibly_damaging(0.861) TCGA-NH-A6GB-01 11 800359 800359 G A PIDD Missense_Mutation p.R712W 0.28 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 11 8752074 8752074 G A ST5 Missense_Mutation p.R255W 0.35 deleterious(0) probably_damaging(0.998) TCGA-NH-A6GB-01 11 93088554 93088554 C A CCDC67 Missense_Mutation p.A16D 0.30 deleterious(0) probably_damaging(0.986) TCGA-NH-A6GB-01 11 94599167 94599167 G C AMOTL1 Missense_Mutation p.Q774H 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A6GB-01 12 126138441 126138441 C T TMEM132B Missense_Mutation p.R808W 0.26 deleterious(0.02) probably_damaging(0.976) TCGA-NH-A6GB-01 12 12878926 12878926 C G APOLD1 5'UTR 0.31 TCGA-NH-A6GB-01 12 13061826 13061826 C T GPRC5A Missense_Mutation p.L215F 0.21 tolerated(0.2) benign(0.034) TCGA-NH-A6GB-01 12 130922951 130922951 C T RIMBP2 Missense_Mutation p.A522T 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-NH-A6GB-01 12 22408302 22408302 A C ST8SIA1 Missense_Mutation p.L135V 0.47 tolerated(0.11) possibly_damaging(0.677) TCGA-NH-A6GB-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-NH-A6GB-01 12 78594264 78594264 T C NAV3 Missense_Mutation p.F2221L 0.12 deleterious(0.01) possibly_damaging(0.784) TCGA-NH-A6GB-01 12 81688774 81688774 C T PPFIA2 Missense_Mutation p.R922Q 0.29 deleterious(0) probably_damaging(0.961) TCGA-NH-A6GB-01 12 8673908 8673908 A G CLEC4D 3'UTR 0.41 TCGA-NH-A6GB-01 12 8976394 8976394 G A A2ML1 Missense_Mutation p.E109K 0.28 tolerated(0.11) benign(0.17) TCGA-NH-A6GB-01 13 111155562 111155562 C A COL4A2 Silent p.T1324T 0.62 TCGA-NH-A6GB-01 13 111287263 111287263 C T CARKD Intron 0.80 TCGA-NH-A6GB-01 13 113140374 113140374 T G TUBGCP3 Missense_Mutation p.Y886S 0.05 deleterious(0) probably_damaging(0.999) TCGA-NH-A6GB-01 13 28626681 28626681 C T FLT3 Splice_Site p.X205_splice 0.62 TCGA-NH-A6GB-01 13 36050094 36050094 T C MAB21L1 Missense_Mutation p.N61S 0.18 tolerated(0.34) benign(0.027) TCGA-NH-A6GB-01 13 39261817 39261817 C T FREM2 Silent p.N112N 0.69 TCGA-NH-A6GB-01 13 42144799 42144799 G A VWA8 Missense_Mutation p.T1805M 0.67 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 13 52682520 52682520 G A NEK5 Missense_Mutation p.T163I 0.20 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 13 96272185 96272185 G A DZIP1 Missense_Mutation p.A376V 0.70 deleterious(0.01) benign(0.118) TCGA-NH-A6GB-01 14 104381424 104381424 C T C14orf2 Missense_Mutation p.V52I 0.56 tolerated(0.38) benign(0.041) TCGA-NH-A6GB-01 14 24572939 24572939 G A PCK2 Silent p.E563E 0.47 TCGA-NH-A6GB-01 14 39510084 39510084 G A SEC23A Missense_Mutation p.A665V 0.43 deleterious(0.01) benign(0.288) TCGA-NH-A6GB-01 14 50262643 50262643 G A NEMF Missense_Mutation p.L829F 0.54 tolerated(0.09) benign(0.002) TCGA-NH-A6GB-01 14 93678470 93678470 C T RP11-371E8.4 Silent p.D165D 0.50 TCGA-NH-A6GB-01 14 99976982 99976982 C G CCNK Missense_Mutation p.P536A 0.46 deleterious_low_confidence(0.01) unknown(0) TCGA-NH-A6GB-01 15 20663143 20663143 C T HERC2P3 RNA 0.29 TCGA-NH-A6GB-01 15 45399130 45399130 G A DUOX2 Silent p.D577D 0.38 TCGA-NH-A6GB-01 15 56387024 56387024 T A RFX7 Missense_Mutation p.M968L 0.05 tolerated_low_confidence(0.06) benign(0.001) TCGA-NH-A6GB-01 15 68379020 68379020 C T PIAS1 Missense_Mutation p.P134L 0.35 deleterious(0) probably_damaging(0.999) TCGA-NH-A6GB-01 16 15111201 15111201 G T PDXDC1 Missense_Mutation p.M295I 0.16 tolerated(0.1) benign(0.044) TCGA-NH-A6GB-01 16 21181872 21181872 C T TMEM159 Missense_Mutation p.L71F 0.28 tolerated(0.17) benign(0.163) TCGA-NH-A6GB-01 16 27079010 27079010 C T C16orf82 RNA 0.33 TCGA-NH-A6GB-01 16 3299750 3299750 C T MEFV Missense_Mutation p.R314H 0.38 tolerated(0.29) benign(0.002) TCGA-NH-A6GB-01 16 72831180 72831180 A T ZFHX3 Missense_Mutation p.Y1801N 0.22 possibly_damaging(0.624) TCGA-NH-A6GB-01 16 80646575 80646575 G A CDYL2 Missense_Mutation p.T389M 0.40 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 16 83999379 83999379 G A OSGIN1 Missense_Mutation p.D401N 0.35 tolerated(1) benign(0.011) TCGA-NH-A6GB-01 16 84228145 84228145 G A ADAD2 Silent p.A244A 0.31 TCGA-NH-A6GB-01 17 10429940 10429940 C T MYH2 Missense_Mutation p.R1388H 0.47 deleterious(0.01) possibly_damaging(0.73) TCGA-NH-A6GB-01 17 18146120 18146120 C T LLGL1 Silent p.A1060A 0.22 TCGA-NH-A6GB-01 17 27591411 27591411 A G NUFIP2 3'UTR 0.08 TCGA-NH-A6GB-01 17 33884437 33884437 G T SLFN14 Missense_Mutation p.F215L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A6GB-01 17 34062134 34062134 C T RASL10B 5'UTR 0.38 TCGA-NH-A6GB-01 17 34916679 34916679 C T GGNBP2 Silent p.H165H 0.15 TCGA-NH-A6GB-01 17 35913556 35913556 C A SYNRG Nonsense_Mutation p.G757* 0.13 TCGA-NH-A6GB-01 17 35913831 35913831 C T SYNRG Missense_Mutation p.S665N 0.27 deleterious(0.02) benign(0.108) TCGA-NH-A6GB-01 17 42882784 42882784 G A GJC1 Silent p.N134N 0.21 TCGA-NH-A6GB-01 17 45888186 45888186 G A OSBPL7 Missense_Mutation p.P585S 0.43 deleterious(0.01) probably_damaging(1) TCGA-NH-A6GB-01 17 60042682 60042682 G A MED13 Missense_Mutation p.A1510V 0.29 tolerated(0.26) benign(0.002) TCGA-NH-A6GB-01 17 61678393 61678393 G A TACO1 5'UTR 0.17 TCGA-NH-A6GB-01 17 61950577 61950577 G A CSH2 Missense_Mutation p.R45C 0.20 deleterious(0) probably_damaging(0.983) TCGA-NH-A6GB-01 17 61973473 61973473 G A CSH1 Missense_Mutation p.R45C 0.50 deleterious(0) probably_damaging(0.988) TCGA-NH-A6GB-01 17 66883583 66883583 G A ABCA8 Missense_Mutation p.A1030V 0.51 deleterious(0.01) probably_damaging(0.987) TCGA-NH-A6GB-01 17 73625339 73625339 G A RECQL5 Missense_Mutation p.H722Y 0.29 tolerated(0.08) benign(0.003) TCGA-NH-A6GB-01 17 7578494 7578495 - CAGCTG TP53 In_Frame_Ins p.Q144_L145dup 0.33 TCGA-NH-A6GB-01 17 80361849 80361849 C T OGFOD3 Silent p.T221T 0.50 TCGA-NH-A6GB-01 17 80787986 80787986 G A ZNF750 3'UTR 0.37 TCGA-NH-A6GB-01 18 44057521 44057521 C T LOXHD1 Intron 0.39 TCGA-NH-A6GB-01 18 44561037 44561037 G A TCEB3B Missense_Mutation p.A200V 0.23 deleterious(0.03) possibly_damaging(0.833) TCGA-NH-A6GB-01 18 50705354 50705354 C A DCC Missense_Mutation p.Q481K 0.23 tolerated(0.2) benign(0.034) TCGA-NH-A6GB-01 18 5433942 5433942 C A EPB41L3 Nonsense_Mutation p.E262* 0.30 TCGA-NH-A6GB-01 19 17038833 17038833 G A CPAMD8 Missense_Mutation p.T1166I 0.28 tolerated(0.05) benign(0.126) TCGA-NH-A6GB-01 19 19221610 19221610 G A SLC25A42 Silent p.K294K 0.37 TCGA-NH-A6GB-01 19 22574212 22574212 T C ZNF98 3'UTR 0.31 TCGA-NH-A6GB-01 19 22574412 22574412 C T ZNF98 Missense_Mutation p.G542E 0.33 tolerated(0.12) benign(0.002) TCGA-NH-A6GB-01 19 2290824 2290824 G A LINGO3 Missense_Mutation p.R318C 0.35 deleterious(0.03) probably_damaging(0.959) TCGA-NH-A6GB-01 19 3005467 3005467 G A TLE2 Missense_Mutation p.R622C 0.34 deleterious(0.02) probably_damaging(0.934) TCGA-NH-A6GB-01 19 31769066 31769066 C A TSHZ3 Missense_Mutation p.G545W 0.33 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 19 39591242 39591242 C T PAPL Missense_Mutation p.R218C 0.33 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 19 39912758 39912758 G A PLEKHG2 Missense_Mutation p.A503T 0.41 tolerated_low_confidence(0.09) benign(0.027) TCGA-NH-A6GB-01 19 41727921 41727921 G A AXL Silent p.T182T 0.10 TCGA-NH-A6GB-01 19 44010875 44010875 G A ETHE1 3'UTR 0.33 TCGA-NH-A6GB-01 19 4670281 4670281 C T C19orf10 Silent p.G22G 0.36 TCGA-NH-A6GB-01 19 50118164 50118164 G A PRR12 Missense_Mutation p.R1641Q 0.19 unknown(0) TCGA-NH-A6GB-01 19 50305812 50305812 C T AP2A1 Silent p.P712P 0.39 TCGA-NH-A6GB-01 19 51128823 51128823 T C SYT3 Splice_Site p.X468_splice 0.37 TCGA-NH-A6GB-01 19 52658928 52658928 C A ZNF836 Missense_Mutation p.D670Y 0.28 deleterious(0.04) probably_damaging(0.964) TCGA-NH-A6GB-01 19 55087508 55087508 A G LILRA2 Missense_Mutation p.Y396C 0.20 deleterious(0.01) probably_damaging(1) TCGA-NH-A6GB-01 19 56002245 56002245 C T SSC5D Silent p.D231D 0.25 TCGA-NH-A6GB-01 1 101005916 101005916 T C GPR88 3'UTR 0.16 TCGA-NH-A6GB-01 1 104162234 104162234 G A AMY2A Missense_Mutation p.R191H 0.17 deleterious(0.01) benign(0.117) TCGA-NH-A6GB-01 1 110765961 110765961 G A KCNC4 Missense_Mutation p.V352M 0.27 deleterious(0) probably_damaging(0.992) TCGA-NH-A6GB-01 1 111217150 111217150 C T KCNA3 Silent p.P94P 0.33 TCGA-NH-A6GB-01 1 116931604 116931604 G A ATP1A1 Silent p.T239T 0.22 TCGA-NH-A6GB-01 1 13716851 13716851 G C PRAMEF17 Missense_Mutation p.W113S 0.33 deleterious(0) probably_damaging(0.999) TCGA-NH-A6GB-01 1 154842090 154842090 G A KCNN3 Silent p.T117T 0.36 TCGA-NH-A6GB-01 1 156507054 156507054 C T IQGAP3 Missense_Mutation p.R1114Q 0.36 tolerated(0.06) benign(0.213) TCGA-NH-A6GB-01 1 158909355 158909355 G A PYHIN1 Intron 0.03 TCGA-NH-A6GB-01 1 159175794 159175794 G T DARC Missense_Mutation p.G191C 0.31 deleterious(0.01) possibly_damaging(0.774) TCGA-NH-A6GB-01 1 17550183 17550183 G A PADI1 Missense_Mutation p.G114D 0.28 deleterious(0.02) possibly_damaging(0.478) TCGA-NH-A6GB-01 1 207812942 207812942 G A CR1 3'Flank 0.35 TCGA-NH-A6GB-01 1 215408191 215408191 C T KCNK2 Silent p.H328H 0.39 TCGA-NH-A6GB-01 1 220233032 220233032 C T BPNT1 Silent p.V258V 0.31 TCGA-NH-A6GB-01 1 228471377 228471377 C T OBSCN Missense_Mutation p.R3400W 0.38 probably_damaging(0.978) TCGA-NH-A6GB-01 1 232650274 232650274 C T SIPA1L2 Missense_Mutation p.G271E 0.35 tolerated(0.39) possibly_damaging(0.844) TCGA-NH-A6GB-01 1 237947036 237947036 C A RYR2 Missense_Mutation p.N4008K 0.30 possibly_damaging(0.519) TCGA-NH-A6GB-01 1 240408822 240408822 T A FMN2 Intron 0.04 TCGA-NH-A6GB-01 1 243319635 243319635 G A CEP170 Missense_Mutation p.R1267C 0.40 deleterious(0) probably_damaging(0.973) TCGA-NH-A6GB-01 1 247751832 247751832 G A OR2G2 Silent p.K57K 0.33 TCGA-NH-A6GB-01 1 248525774 248525774 C A OR2T4 Missense_Mutation p.H298N 0.29 deleterious(0) probably_damaging(0.967) TCGA-NH-A6GB-01 1 28802760 28802760 C T PHACTR4 Silent p.P531P 0.33 TCGA-NH-A6GB-01 1 32098091 32098091 C T PEF1 Intron 0.30 TCGA-NH-A6GB-01 1 33631128 33631128 C T TRIM62 Missense_Mutation p.E150K 0.42 tolerated(1) benign(0.006) TCGA-NH-A6GB-01 1 33999485 33999485 C T CSMD2 Missense_Mutation p.R3157H 0.29 tolerated(0.16) benign(0.021) TCGA-NH-A6GB-01 1 39827327 39827327 C T MACF1 Missense_Mutation p.T2188I 0.32 benign(0.038) TCGA-NH-A6GB-01 1 42048703 42048703 C T HIVEP3 Missense_Mutation p.R589H 0.30 probably_damaging(0.998) TCGA-NH-A6GB-01 1 44466465 44466465 G A SLC6A9 Missense_Mutation p.R577C 0.31 tolerated(0.1) probably_damaging(1) TCGA-NH-A6GB-01 1 6190357 6190357 G T CHD5 Silent p.L1098L 0.21 TCGA-NH-A6GB-01 1 63113905 63113905 G A DOCK7 Missense_Mutation p.L202F 0.34 tolerated(0.05) benign(0.104) TCGA-NH-A6GB-01 1 7792515 7792515 G T CAMTA1 Missense_Mutation p.Q974H 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-NH-A6GB-01 20 14308015 14308015 A C FLRT3 Missense_Mutation p.D46E 0.26 tolerated(0.56) probably_damaging(0.999) TCGA-NH-A6GB-01 20 23066099 23066099 G A CD93 Missense_Mutation p.A244V 0.58 tolerated(0.32) benign(0.025) TCGA-NH-A6GB-01 20 31628074 31628074 C T BPIFB6 Silent p.V364V 0.06 TCGA-NH-A6GB-01 20 35457553 35457553 C T SOGA1 Silent p.A325A 0.14 TCGA-NH-A6GB-01 20 35885221 35885221 A G GHRH Silent p.P24P 0.51 TCGA-NH-A6GB-01 20 44839129 44839129 C T CDH22 Missense_Mutation p.R368H 0.32 deleterious(0.04) possibly_damaging(0.87) TCGA-NH-A6GB-01 20 4706262 4706262 G T PRND 3'UTR 0.37 TCGA-NH-A6GB-01 20 62858816 62858816 C A MYT1 Nonsense_Mutation p.Y859* 0.12 TCGA-NH-A6GB-01 22 36960232 36960233 - TT CACNG2 3'UTR 0.58 TCGA-NH-A6GB-01 22 37098626 37098626 C T CACNG2 5'UTR 0.29 TCGA-NH-A6GB-01 22 42999140 42999140 C T POLDIP3 Missense_Mutation p.G29D 0.16 tolerated(0.11) benign(0.018) TCGA-NH-A6GB-01 2 108477252 108477252 C T RGPD4 Nonsense_Mutation p.R597* 0.25 TCGA-NH-A6GB-01 2 108488796 108488796 G T RGPD4 Missense_Mutation p.V1446F 0.48 deleterious(0) probably_damaging(0.996) TCGA-NH-A6GB-01 2 133489602 133489602 T C NCKAP5 Silent p.T1717T 0.37 TCGA-NH-A6GB-01 2 144764907 144764907 T G GTDC1 Silent p.S239S 0.31 TCGA-NH-A6GB-01 2 15771199 15771199 C A DDX1 3'UTR 0.46 TCGA-NH-A6GB-01 2 191064855 191064855 T C C2orf88 Missense_Mutation p.I90T 0.31 deleterious(0) probably_damaging(0.999) TCGA-NH-A6GB-01 2 196720547 196720547 G A DNAH7 Silent p.D2861D 0.31 TCGA-NH-A6GB-01 2 198593279 198593279 T A BOLL Nonstop_Mutation p.*296Yext*11 0.18 TCGA-NH-A6GB-01 2 203684394 203684394 C T ICA1L Intron 0.32 TCGA-NH-A6GB-01 2 232320775 232320775 T C NCL Missense_Mutation p.D593G 0.32 benign(0.349) TCGA-NH-A6GB-01 2 24260743 24260743 C T C2orf44 Missense_Mutation p.R541H 0.26 tolerated(0.13) benign(0) TCGA-NH-A6GB-01 2 37458662 37458662 G A CEBPZ Missense_Mutation p.R17C 0.33 deleterious_low_confidence(0.05) benign(0.002) TCGA-NH-A6GB-01 2 44547937 44547937 G T SLC3A1 3'UTR 0.41 TCGA-NH-A6GB-01 2 48046207 48046207 C T FBXO11 Missense_Mutation p.G603E 0.25 deleterious(0) probably_damaging(0.998) TCGA-NH-A6GB-01 2 89986833 89986833 G A IGKV2D-29 Silent p.P38P 0.32 TCGA-NH-A6GB-01 2 97377601 97377601 C T LMAN2L Silent p.T234T 0.21 TCGA-NH-A6GB-01 2 97790239 97790239 A C ANKRD36 Silent p.I212I 0.34 TCGA-NH-A6GB-01 2 99237951 99237951 G A MGAT4A 3'UTR 0.31 TCGA-NH-A6GB-01 3 111732569 111732569 C T TAGLN3 3'UTR 0.75 TCGA-NH-A6GB-01 3 121822573 121822573 G A CD86 Nonsense_Mutation p.W93* 0.20 TCGA-NH-A6GB-01 3 130659492 130659493 TC - ATP2C1 Frame_Shift_Del p.L162* 0.21 TCGA-NH-A6GB-01 3 134967277 134967277 G A EPHB1 Silent p.A872A 0.34 TCGA-NH-A6GB-01 3 138091781 138091781 T G MRAS Missense_Mutation p.V19G 0.34 deleterious(0.01) probably_damaging(1) TCGA-NH-A6GB-01 3 16475416 16475416 G A RFTN1 Missense_Mutation p.R92W 0.31 deleterious(0.03) benign(0.024) TCGA-NH-A6GB-01 3 38591859 38591859 C T SCN5A Missense_Mutation p.A2002T 0.28 tolerated(0.14) benign(0.005) TCGA-NH-A6GB-01 3 38926847 38926847 A T SCN11A Missense_Mutation p.L999H 0.32 tolerated(0.23) benign(0.089) TCGA-NH-A6GB-01 3 46009774 46009774 A G FYCO1 Missense_Mutation p.L351P 0.23 deleterious(0) probably_damaging(0.974) TCGA-NH-A6GB-01 3 49830674 49830674 C T CDHR4 Missense_Mutation p.R565H 0.33 tolerated(0.48) benign(0.003) TCGA-NH-A6GB-01 3 56717061 56717061 G A FAM208A 5'Flank 0.38 TCGA-NH-A6GB-01 3 71821843 71821843 G A PROK2 3'UTR 0.40 TCGA-NH-A6GB-01 3 88188965 88188965 G C ZNF654 Missense_Mutation p.D169H 0.27 deleterious(0.03) possibly_damaging(0.789) TCGA-NH-A6GB-01 4 102268036 102268036 G A PPP3CA 5'UTR 0.31 TCGA-NH-A6GB-01 4 102268037 102268037 C A PPP3CA 5'UTR 0.31 TCGA-NH-A6GB-01 4 10445435 10445435 C T ZNF518B Missense_Mutation p.E840K 0.14 tolerated(0.3) benign(0.012) TCGA-NH-A6GB-01 4 106161918 106161918 A T TET2 Intron 0.35 TCGA-NH-A6GB-01 4 111539490 111539490 T G PITX2 Missense_Mutation p.S256R 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-NH-A6GB-01 4 126369701 126369701 T A FAT4 Silent p.S2510S 0.35 TCGA-NH-A6GB-01 4 147861052 147861052 G T TTC29 Intron 0.35 TCGA-NH-A6GB-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.26 deleterious(0) probably_damaging(0.998) TCGA-NH-A6GB-01 4 44449949 44449949 C T KCTD8 Missense_Mutation p.G198S 0.28 tolerated(0.87) benign(0) TCGA-NH-A6GB-01 4 7666091 7666091 G A SORCS2 Missense_Mutation p.V322I 0.30 tolerated(0.37) benign(0.005) TCGA-NH-A6GB-01 4 81123201 81123201 C T PRDM8 Silent p.G195G 0.05 TCGA-NH-A6GB-01 4 84383770 84383770 C T FAM175A Missense_Mutation p.R361Q 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-NH-A6GB-01 4 94145907 94145907 T C GRID2 Missense_Mutation p.M369T 0.11 deleterious(0.01) possibly_damaging(0.643) TCGA-NH-A6GB-01 5 10464964 10464964 G A ROPN1L Missense_Mutation p.A200T 0.34 tolerated(0.55) benign(0.001) TCGA-NH-A6GB-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.27 TCGA-NH-A6GB-01 5 112175576 112175576 C T APC Nonsense_Mutation p.Q1429* 0.27 TCGA-NH-A6GB-01 5 140250260 140250260 C T PCDHA11 Silent p.H524H 0.33 TCGA-NH-A6GB-01 5 140559792 140559792 G A PCDHB8 Missense_Mutation p.C726Y 0.17 tolerated_low_confidence(0.15) benign(0.007) TCGA-NH-A6GB-01 5 162940982 162940982 G A MAT2B Missense_Mutation p.V170I 0.30 tolerated(0.2) benign(0.035) TCGA-NH-A6GB-01 5 176710921 176710921 T A NSD1 Missense_Mutation p.I2048N 0.12 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 5 178408642 178408642 G A GRM6 3'UTR 0.29 TCGA-NH-A6GB-01 5 33937019 33937019 C T RXFP3 Silent p.D58D 0.33 TCGA-NH-A6GB-01 6 112021307 112021307 C T FYN Missense_Mutation p.G288S 0.29 deleterious(0) probably_damaging(0.933) TCGA-NH-A6GB-01 6 13697018 13697018 C T RANBP9 Missense_Mutation p.G228S 0.33 deleterious(0.03) benign(0.097) TCGA-NH-A6GB-01 6 152652715 152652715 C T SYNE1 Missense_Mutation p.E4369K 0.31 probably_damaging(0.997) TCGA-NH-A6GB-01 6 152784559 152784559 A C SYNE1 Missense_Mutation p.S676A 0.34 possibly_damaging(0.707) TCGA-NH-A6GB-01 6 161528978 161528978 G A MAP3K4 Missense_Mutation p.G1366R 0.28 deleterious(0) probably_damaging(0.999) TCGA-NH-A6GB-01 6 166579201 166579201 T C T Missense_Mutation p.N200S 0.26 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 6 20402490 20402490 G A E2F3 Silent p.L9L 0.27 TCGA-NH-A6GB-01 6 26199441 26199441 C G HIST1H2AD Missense_Mutation p.A11P 0.32 deleterious_low_confidence(0.04) unknown(0) TCGA-NH-A6GB-01 6 42224486 42224489 CAAA - TRERF1 Frame_Shift_Del p.F853Rfs*6 0.32 TCGA-NH-A6GB-01 6 53743796 53743796 C T LRRC1 Missense_Mutation p.P95S 0.35 tolerated(0.32) benign(0.045) TCGA-NH-A6GB-01 6 96654778 96654778 A G FUT9 3'UTR 0.05 TCGA-NH-A6GB-01 6 96659742 96659742 C A FUT9 3'UTR 0.35 TCGA-NH-A6GB-01 7 134761148 134761149 - A AGBL3 Frame_Shift_Ins p.H639Tfs*25 0.27 TCGA-NH-A6GB-01 7 138982711 138982712 - T UBN2 3'UTR 0.43 TCGA-NH-A6GB-01 7 14722396 14722396 C T DGKB Silent p.K300K 0.15 TCGA-NH-A6GB-01 7 35145667 35145667 C G DPY19L2P1 RNA 0.16 TCGA-NH-A6GB-01 7 37947238 37947238 C T SFRP4 Missense_Mutation p.R295Q 0.36 tolerated(0.43) benign(0) TCGA-NH-A6GB-01 7 5983076 5983076 G A RSPH10B Missense_Mutation p.T546M 0.18 deleterious(0) possibly_damaging(0.902) TCGA-NH-A6GB-01 7 64389479 64389479 T G ZNF273 3'UTR 0.22 TCGA-NH-A6GB-01 7 69064579 69064579 T G AUTS2 5'UTR 0.43 TCGA-NH-A6GB-01 7 73483148 73483148 C T ELN 3'UTR 0.29 TCGA-NH-A6GB-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.24 TCGA-NH-A6GB-01 8 139160791 139160791 G T FAM135B Missense_Mutation p.H1140Q 0.20 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 8 143747434 143747434 C T JRK RNA 0.63 TCGA-NH-A6GB-01 8 145755802 145755802 C T ARHGAP39 3'UTR 0.28 TCGA-NH-A6GB-01 8 182393 182393 C A ZNF596 5'UTR 0.10 TCGA-NH-A6GB-01 8 77617819 77617825 ATTTCCC CATT ZFHX4 In_Frame_Del p.D499_P501delinsAF 0.12 TCGA-NH-A6GB-01 9 108358901 108358901 C G FKTN Missense_Mutation p.S43C 0.36 tolerated_low_confidence(0.05) benign(0.115) TCGA-NH-A6GB-01 9 127690543 127690543 T - GOLGA1 Frame_Shift_Del p.E108Gfs*21 0.21 TCGA-NH-A6GB-01 9 132481670 132481670 C T PRRX2 Silent p.R140R 0.25 TCGA-NH-A6GB-01 9 134136281 134136281 G A FAM78A Silent p.N260N 0.37 TCGA-NH-A6GB-01 9 139395164 139395164 T C NOTCH1 Missense_Mutation p.D1925G 0.33 deleterious(0) possibly_damaging(0.864) TCGA-NH-A6GB-01 9 139656249 139656249 C T LCN15 3'UTR 0.52 TCGA-NH-A6GB-01 9 21141929 21141930 - AT IFNW1 5'UTR 0.37 TCGA-NH-A6GB-01 9 21861980 21861980 G A MTAP Missense_Mutation p.M273I 0.25 tolerated(0.45) benign(0) TCGA-NH-A6GB-01 9 2648223 2648223 G A VLDLR Missense_Mutation p.R613H 0.25 deleterious(0) probably_damaging(1) TCGA-NH-A6GB-01 9 32631752 32631752 G A TAF1L Missense_Mutation p.R1276C 0.34 deleterious(0.01) possibly_damaging(0.582) TCGA-NH-A6GB-01 9 35818888 35818888 G A FAM221B Silent p.R390R 0.31 TCGA-NH-A6GB-01 9 82337375 82337375 C T TLE4 Silent p.L666L 0.41 TCGA-NH-A6GB-01 9 95056028 95056028 G T IARS 5'Flank 0.41 TCGA-NH-A6GB-01 X 106844871 106844871 C G FRMPD3 Missense_Mutation p.S1234C 0.19 tolerated_low_confidence(0.07) benign(0.007) TCGA-NH-A6GB-01 X 122747944 122747944 T A THOC2 Nonsense_Mutation p.R1470* 0.11 TCGA-NH-A6GB-01 X 12905226 12905226 T C TLR7 Silent p.L533L 0.42 TCGA-NH-A6GB-01 X 135055755 135055755 C T MMGT1 Splice_Site p.X27_splice 0.16 TCGA-NH-A6GB-01 X 138664475 138664475 A T MCF2 3'UTR 0.54 TCGA-NH-A6GB-01 X 140994470 140994470 C A MAGEC1 Missense_Mutation p.S427Y 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.608) TCGA-NH-A6GB-01 X 152614778 152614778 G A ZNF275 3'UTR 0.17 TCGA-NH-A6GB-01 X 152770808 152770808 C T BGN Silent p.Y117Y 0.53 TCGA-NH-A6GB-01 X 18275104 18275104 G A SCML2 Silent p.N440N 0.27 TCGA-NH-A6GB-01 X 47426725 47426725 G A ARAF Missense_Mutation p.V324M 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-NH-A6GB-01 X 48564701 48564701 C T SUV39H1 Missense_Mutation p.R292C 0.35 tolerated(0.06) benign(0.022) TCGA-NH-A6GB-01 X 57936678 57936678 G A ZXDA Silent p.R59R 0.25 TCGA-NH-A6GB-01 X 71521710 71521710 C A CITED1 Missense_Mutation p.D175Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-NH-A6GB-01 X 9864308 9864308 C T SHROOM2 Missense_Mutation p.S787F 0.23 deleterious(0.02) benign(0.304) TCGA-NH-A6GC-01 10 134671261 134671261 G T TTC40 Missense_Mutation p.Q1803K 0.08 tolerated(0.17) benign(0.007) TCGA-NH-A6GC-01 11 120996563 120996563 C T TECTA Nonsense_Mutation p.R586* 0.27 TCGA-NH-A6GC-01 11 121016725 121016725 G A TECTA Silent p.G1335G 0.25 TCGA-NH-A6GC-01 11 128963548 128963548 C G ARHGAP32 Missense_Mutation p.E153Q 0.60 deleterious(0.02) probably_damaging(0.994) TCGA-NH-A6GC-01 11 4967729 4967729 C G OR51A4 Missense_Mutation p.G201A 0.11 deleterious(0.01) possibly_damaging(0.887) TCGA-NH-A6GC-01 11 55927529 55927529 G A OR8K5 Nonsense_Mutation p.R89* 0.19 TCGA-NH-A6GC-01 11 64418876 64418876 C A NRXN2 Missense_Mutation p.K923N 0.34 deleterious(0) probably_damaging(0.941) TCGA-NH-A6GC-01 11 74904292 74904292 C T SLCO2B1 Missense_Mutation p.R369C 0.29 deleterious(0.02) probably_damaging(1) TCGA-NH-A6GC-01 11 94277790 94277790 C T FUT4 Missense_Mutation p.T164M 0.10 tolerated(0.06) benign(0.267) TCGA-NH-A6GC-01 12 101680190 101680190 C T UTP20 Nonsense_Mutation p.Q140* 0.30 TCGA-NH-A6GC-01 12 101736790 101736790 C A UTP20 Silent p.I1456I 0.28 TCGA-NH-A6GC-01 12 112512521 112512521 C T NAA25 Missense_Mutation p.R275Q 0.26 tolerated(0.53) benign(0.002) TCGA-NH-A6GC-01 12 132211508 132211508 G A SFSWAP Missense_Mutation p.E286K 0.32 tolerated(0.06) possibly_damaging(0.669) TCGA-NH-A6GC-01 12 132516600 132516600 G A EP400 Missense_Mutation p.V1953M 0.46 unknown(0) TCGA-NH-A6GC-01 12 133682575 133682575 A C ZNF140 Missense_Mutation p.T238P 0.24 deleterious(0) probably_damaging(0.979) TCGA-NH-A6GC-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.53 deleterious(0) possibly_damaging(0.479) TCGA-NH-A6GC-01 12 53918416 53918416 G A ATF7 Nonsense_Mutation p.R353* 0.66 TCGA-NH-A6GC-01 12 8671743 8671743 C G CLEC4D Missense_Mutation p.T124R 0.24 deleterious(0) probably_damaging(0.985) TCGA-NH-A6GC-01 12 8688712 8688712 G A CLEC4E Silent p.D154D 0.57 TCGA-NH-A6GC-01 13 103718638 103718638 C T SLC10A2 5'UTR 0.56 TCGA-NH-A6GC-01 13 31860902 31860902 G A B3GALTL Missense_Mutation p.R337H 0.55 tolerated(0.66) benign(0.002) TCGA-NH-A6GC-01 13 50204926 50204926 G A ARL11 Missense_Mutation p.V115I 0.27 tolerated(0.11) benign(0.196) TCGA-NH-A6GC-01 14 102974036 102974036 C T ANKRD9 Missense_Mutation p.R64H 0.18 tolerated(0.14) possibly_damaging(0.512) TCGA-NH-A6GC-01 14 105677502 105677502 G A BRF1 Silent p.D651D 0.38 TCGA-NH-A6GC-01 14 23315175 23315177 TCT - MMP14 In_Frame_Del p.F562del 0.45 TCGA-NH-A6GC-01 14 63416839 63416839 T G KCNH5 Intron 0.27 TCGA-NH-A6GC-01 15 43749260 43749260 C A TP53BP1 Missense_Mutation p.D516Y 0.69 deleterious(0) possibly_damaging(0.888) TCGA-NH-A6GC-01 15 48494243 48494243 C A CTXN2 3'UTR 0.28 TCGA-NH-A6GC-01 16 11260253 11260253 G A CLEC16A Missense_Mutation p.V884M 0.22 deleterious(0.01) possibly_damaging(0.873) TCGA-NH-A6GC-01 16 16142070 16142070 C T ABCC1 Silent p.D430D 0.16 TCGA-NH-A6GC-01 16 2161856 2161856 G A PKD1 Silent p.T1104T 0.16 TCGA-NH-A6GC-01 16 22826011 22826011 C T HS3ST2 Missense_Mutation p.S27L 0.07 tolerated(0.4) benign(0.003) TCGA-NH-A6GC-01 16 3433524 3433524 C G ZSCAN32 Missense_Mutation p.E262D 0.10 tolerated(0.37) benign(0.135) TCGA-NH-A6GC-01 16 3647942 3647942 G A SLX4 Missense_Mutation p.R408W 0.14 deleterious(0) possibly_damaging(0.895) TCGA-NH-A6GC-01 16 82101843 82101843 G A HSD17B2 Missense_Mutation p.G112R 0.08 deleterious(0) probably_damaging(0.911) TCGA-NH-A6GC-01 16 88800151 88800151 C - PIEZO1 Frame_Shift_Del p.A778Qfs*50 0.14 TCGA-NH-A6GC-01 16 90160899 90160900 - GGT TUBB8P7 RNA 0.17 TCGA-NH-A6GC-01 16 9892294 9892294 G C GRIN2A Silent p.A732A 0.23 TCGA-NH-A6GC-01 17 11845663 11845663 A G DNAH9 Missense_Mutation p.E4235G 0.37 benign(0.148) TCGA-NH-A6GC-01 17 18022772 18022772 C T MYO15A Missense_Mutation p.R220C 0.74 probably_damaging(0.992) TCGA-NH-A6GC-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.79 deleterious(0) probably_damaging(0.997) TCGA-NH-A6GC-01 18 12274230 12274230 G A CIDEA Missense_Mutation p.V157M 0.43 tolerated(0.62) possibly_damaging(0.457) TCGA-NH-A6GC-01 18 19032156 19032156 T C GREB1L Silent p.A654A 0.05 TCGA-NH-A6GC-01 18 3119909 3119909 T G MYOM1 Missense_Mutation p.S1026R 0.36 deleterious(0) probably_damaging(0.98) TCGA-NH-A6GC-01 18 44036619 44036619 A T RNF165 3'UTR 0.17 TCGA-NH-A6GC-01 19 17945764 17945764 G A JAK3 Missense_Mutation p.A699V 0.30 tolerated(0.09) benign(0.311) TCGA-NH-A6GC-01 19 2767627 2767627 G A SGTA Missense_Mutation p.A53V 0.12 tolerated(0.1) benign(0.13) TCGA-NH-A6GC-01 19 44131387 44131387 C T CADM4 Missense_Mutation p.E99K 0.14 deleterious(0) possibly_damaging(0.47) TCGA-NH-A6GC-01 19 51219998 51219998 C T SHANK1 Missense_Mutation p.R60H 0.24 possibly_damaging(0.865) TCGA-NH-A6GC-01 19 6495759 6495759 G A TUBB4A Missense_Mutation p.R251C 0.56 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-NH-A6GC-01 19 8555587 8555587 C T PRAM1 Silent p.K599K 0.40 TCGA-NH-A6GC-01 19 9204711 9204711 C T OR1M1 Missense_Mutation p.S264L 0.32 deleterious(0.02) probably_damaging(0.936) TCGA-NH-A6GC-01 19 9453766 9453766 G T ZNF559 3'UTR 0.56 TCGA-NH-A6GC-01 1 101431463 101431464 - G SLC30A7 Frame_Shift_Ins p.I358Sfs*15 0.17 TCGA-NH-A6GC-01 1 107600900 107600900 G A PRMT6 3'UTR 0.36 TCGA-NH-A6GC-01 1 109740111 109740111 G A KIAA1324 Missense_Mutation p.V713M 0.17 deleterious(0.04) benign(0.443) TCGA-NH-A6GC-01 1 115130351 115130351 T C DENND2C Missense_Mutation p.K885R 0.13 tolerated(0.51) benign(0.03) TCGA-NH-A6GC-01 1 118065899 118065899 C T MAN1A2 3'UTR 0.22 TCGA-NH-A6GC-01 1 152636831 152636831 C T LCE2D Missense_Mutation p.R84C 0.24 tolerated_low_confidence(0.18) unknown(0) TCGA-NH-A6GC-01 1 158389891 158389891 A G OR10K2 Missense_Mutation p.S256P 0.23 deleterious(0) probably_damaging(1) TCGA-NH-A6GC-01 1 160253413 160253413 G A PEX19 Silent p.F29F 0.44 TCGA-NH-A6GC-01 1 17034488 17034488 C A ESPNP RNA 0.10 TCGA-NH-A6GC-01 1 172520730 172520730 C T SUCO Silent p.C47C 0.24 TCGA-NH-A6GC-01 1 178252773 178252773 A C RASAL2 Missense_Mutation p.K93Q 0.34 tolerated(0.06) possibly_damaging(0.805) TCGA-NH-A6GC-01 1 19559628 19559628 A C EMC1 Missense_Mutation p.D478E 0.24 tolerated(0.1) benign(0.043) TCGA-NH-A6GC-01 1 205889331 205889331 C T SLC26A9 Missense_Mutation p.V695M 0.25 deleterious(0) probably_damaging(0.954) TCGA-NH-A6GC-01 1 22033396 22033397 - T USP48 Intron 0.23 TCGA-NH-A6GC-01 1 247978928 247978928 C A OR14A16 Missense_Mutation p.C35F 0.56 deleterious(0.02) benign(0.005) TCGA-NH-A6GC-01 1 248403031 248403031 G A OR2M4 Silent p.T267T 0.62 TCGA-NH-A6GC-01 1 248569925 248569925 C T OR2T1 Silent p.T210T 0.29 TCGA-NH-A6GC-01 1 29641936 29641936 A T PTPRU Missense_Mutation p.M1104L 0.62 deleterious(0) probably_damaging(0.983) TCGA-NH-A6GC-01 1 44149363 44149363 T G KDM4A Missense_Mutation p.D581E 0.33 tolerated(1) benign(0) TCGA-NH-A6GC-01 1 66098921 66098921 G A LEPR Intron 0.26 TCGA-NH-A6GC-01 1 75055190 75055191 - A C1orf173 Intron 0.23 TCGA-NH-A6GC-01 1 85491507 85491507 T A MCOLN3 Intron 0.27 TCGA-NH-A6GC-01 20 23358026 23358026 C T NAPB Missense_Mutation p.G295E 0.21 tolerated(0.4) probably_damaging(1) TCGA-NH-A6GC-01 20 60581743 60581743 C T TAF4 Silent p.P682P 0.43 TCGA-NH-A6GC-01 21 32007687 32007687 G T KRTAP20-2 Silent p.L35L 0.29 TCGA-NH-A6GC-01 21 32595895 32595895 C A TIAM1 Nonsense_Mutation p.E608* 0.25 TCGA-NH-A6GC-01 21 45786679 45786679 C A TRPM2 Missense_Mutation p.H156N 0.22 tolerated(0.05) benign(0.15) TCGA-NH-A6GC-01 22 37482415 37482415 G A TMPRSS6 Missense_Mutation p.A303V 0.53 deleterious(0) benign(0.222) TCGA-NH-A6GC-01 22 39019225 39019225 G T FAM227A Silent p.R299R 0.28 TCGA-NH-A6GC-01 22 42463140 42463140 G A NAGA Missense_Mutation p.S160F 0.27 deleterious(0.02) benign(0.202) TCGA-NH-A6GC-01 22 43088924 43088924 G A A4GALT Missense_Mutation p.T345M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-NH-A6GC-01 22 50283494 50283494 G A ZBED4 3'UTR 0.03 TCGA-NH-A6GC-01 2 119604388 119604389 - G EN1 Frame_Shift_Ins p.K119Tfs*27 0.21 TCGA-NH-A6GC-01 2 152534561 152534561 C A NEB Missense_Mutation p.K1132N 0.14 benign(0.321) TCGA-NH-A6GC-01 2 196709866 196709867 AG - DNAH7 Frame_Shift_Del p.T2935Ifs*12 0.17 TCGA-NH-A6GC-01 2 216931122 216931122 G A PECR Missense_Mutation p.R82W 0.17 deleterious(0) probably_damaging(0.999) TCGA-NH-A6GC-01 2 220424070 220424070 G T OBSL1 Missense_Mutation p.L1035M 0.17 deleterious(0) probably_damaging(0.998) TCGA-NH-A6GC-01 2 234839312 234839312 G T TRPM8 Splice_Site p.X40_splice 0.22 TCGA-NH-A6GC-01 2 235951272 235951272 C - SH3BP4 Frame_Shift_Del p.Q622Kfs*114 0.29 TCGA-NH-A6GC-01 2 238296552 238296552 C A COL6A3 Missense_Mutation p.V329L 0.20 benign(0.281) TCGA-NH-A6GC-01 2 241616046 241616046 G A AQP12B Silent p.A280A 0.21 TCGA-NH-A6GC-01 2 27551460 27551460 G A GTF3C2 Missense_Mutation p.L711F 0.46 tolerated(0.09) benign(0.147) TCGA-NH-A6GC-01 2 39934230 39934230 G T TMEM178A Missense_Mutation p.A186S 0.08 tolerated(0.38) possibly_damaging(0.449) TCGA-NH-A6GC-01 2 88888369 88888369 T A EIF2AK3 Nonsense_Mutation p.K406* 0.21 TCGA-NH-A6GC-01 2 95540614 95540614 G T TEKT4 Silent p.L269L 0.18 TCGA-NH-A6GC-01 3 130098805 130098805 T G COL6A5 Silent p.T404T 0.24 TCGA-NH-A6GC-01 3 142681356 142681356 C T PAQR9 Missense_Mutation p.V275M 0.41 tolerated(0.22) possibly_damaging(0.756) TCGA-NH-A6GC-01 3 14799162 14799162 G T C3orf20 Missense_Mutation p.R742L 0.19 deleterious(0) probably_damaging(0.977) TCGA-NH-A6GC-01 3 33183922 33183922 A T CRTAP Missense_Mutation p.E396D 0.13 tolerated_low_confidence(0.3) unknown(0) TCGA-NH-A6GC-01 3 44283403 44283403 G A TOPAZ1 5'UTR 0.19 TCGA-NH-A6GC-01 3 44284453 44284453 A T TOPAZ1 Missense_Mutation p.E152V 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-NH-A6GC-01 3 50357047 50357047 C T HYAL2 Missense_Mutation p.V292I 0.37 deleterious(0.02) probably_damaging(0.995) TCGA-NH-A6GC-01 3 68466553 68466553 G A FAM19A1 Missense_Mutation p.R81Q 0.38 tolerated(0.77) benign(0.025) TCGA-NH-A6GC-01 3 77629269 77629269 G C ROBO2 Missense_Mutation p.G850R 0.14 deleterious(0.05) probably_damaging(0.956) TCGA-NH-A6GC-01 4 126389840 126389840 T A FAT4 Missense_Mutation p.F4025I 0.39 benign(0.009) TCGA-NH-A6GC-01 4 138451274 138451274 T C PCDH18 Missense_Mutation p.I657V 0.05 tolerated(0.41) benign(0.001) TCGA-NH-A6GC-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.37 TCGA-NH-A6GC-01 4 156135267 156135267 C G NPY2R Missense_Mutation p.S59C 0.46 tolerated(0.19) benign(0.246) TCGA-NH-A6GC-01 4 156294402 156294402 C G MAP9 Missense_Mutation p.D123H 0.35 deleterious(0.02) benign(0.022) TCGA-NH-A6GC-01 4 188926145 188926145 G A ZFP42 3'UTR 0.32 TCGA-NH-A6GC-01 4 79393416 79393416 C T FRAS1 Missense_Mutation p.T2485M 0.50 benign(0.018) TCGA-NH-A6GC-01 5 140176494 140176494 G A PCDHA2 Missense_Mutation p.V649M 0.12 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-NH-A6GC-01 5 140221015 140221015 G A PCDHA8 Missense_Mutation p.E37K 0.85 deleterious_low_confidence(0) probably_damaging(1) TCGA-NH-A6GC-01 5 140531919 140531919 C T PCDHB6 Missense_Mutation p.S694L 0.11 deleterious_low_confidence(0.02) benign(0.068) TCGA-NH-A6GC-01 5 140557445 140557445 C G PCDHB8 5'UTR 0.24 TCGA-NH-A6GC-01 5 160047425 160047425 G C ATP10B Missense_Mutation p.T782S 0.17 tolerated(0.32) probably_damaging(1) TCGA-NH-A6GC-01 5 24491851 24491851 G T CDH10 Missense_Mutation p.D570E 0.35 deleterious(0) probably_damaging(0.983) TCGA-NH-A6GC-01 5 39285068 39285068 G A C9 3'UTR 0.29 TCGA-NH-A6GC-01 5 82808146 82808146 C A VCAN Missense_Mutation p.L325M 0.18 deleterious(0) probably_damaging(0.998) TCGA-NH-A6GC-01 5 94956929 94956929 C T GPR150 Missense_Mutation p.A317V 0.29 deleterious(0.05) probably_damaging(0.997) TCGA-NH-A6GC-01 6 110146628 110146628 A G FIG4 3'UTR 0.25 TCGA-NH-A6GC-01 6 129591798 129591798 T G LAMA2 Nonsense_Mutation p.Y784* 0.25 TCGA-NH-A6GC-01 6 151673829 151673829 G T AKAP12 Missense_Mutation p.A1435S 0.18 deleterious(0.03) benign(0.016) TCGA-NH-A6GC-01 6 152734614 152734614 G T SYNE1 Missense_Mutation p.L2035I 0.46 benign(0.288) TCGA-NH-A6GC-01 6 167754703 167754703 G A TTLL2 Missense_Mutation p.A439T 0.14 tolerated(0.45) benign(0) TCGA-NH-A6GC-01 6 170632273 170632273 C G FAM120B Missense_Mutation p.A614G 0.16 tolerated(0.21) benign(0.237) TCGA-NH-A6GC-01 6 25726753 25726753 C T HIST1H2AA Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-NH-A6GC-01 6 26043594 26043594 C A HIST1H2BB Missense_Mutation p.A98S 0.16 deleterious_low_confidence(0.05) benign(0.082) TCGA-NH-A6GC-01 6 26056343 26056343 A C HIST1H1C Missense_Mutation p.F105C 0.20 deleterious(0) probably_damaging(1) TCGA-NH-A6GC-01 6 32083486 32083486 C T ATF6B 3'UTR 0.45 TCGA-NH-A6GC-01 6 32155030 32155030 G C PBX2 Missense_Mutation p.P338R 0.23 deleterious(0) probably_damaging(0.992) TCGA-NH-A6GC-01 6 43418058 43418058 G A ABCC10 3'UTR 0.16 TCGA-NH-A6GC-01 6 70451731 70451731 G C LMBRD1 Missense_Mutation p.S171C 0.20 deleterious(0.01) probably_damaging(0.963) TCGA-NH-A6GC-01 6 97629902 97629902 T A MMS22L Silent p.P754P 0.22 TCGA-NH-A6GC-01 7 100456719 100456719 G A SLC12A9 Missense_Mutation p.A305T 0.27 deleterious(0) probably_damaging(0.997) TCGA-NH-A6GC-01 7 106850802 106850802 C G COG5 Intron 0.18 TCGA-NH-A6GC-01 7 121653788 121653788 A C PTPRZ1 Missense_Mutation p.E1563A 0.23 deleterious(0.01) benign(0.101) TCGA-NH-A6GC-01 7 141794601 141794601 C T MGAM Missense_Mutation p.R1570C 0.43 deleterious(0) probably_damaging(1) TCGA-NH-A6GC-01 7 1477199 1477199 G A MICALL2 Silent p.G816G 0.12 TCGA-NH-A6GC-01 7 149128961 149128961 G A ZNF777 Missense_Mutation p.T801M 0.14 deleterious(0) probably_damaging(0.999) TCGA-NH-A6GC-01 7 34698114 34698114 G A NPSR1 Silent p.V30V 0.20 TCGA-NH-A6GC-01 7 42005086 42005086 G A GLI3 Silent p.N1195N 0.14 TCGA-NH-A6GC-01 7 44144477 44144477 G - AEBP1 Frame_Shift_Del p.G73Afs*219 0.13 TCGA-NH-A6GC-01 7 6777128 6777128 C T PMS2CL RNA 0.47 TCGA-NH-A6GC-01 7 81579688 81579688 C G CACNA2D1 3'UTR 0.14 TCGA-NH-A6GC-01 8 101733856 101733856 G C PABPC1 5'UTR 0.24 TCGA-NH-A6GC-01 8 10470050 10470050 G A RP1L1 Missense_Mutation p.R520C 0.40 benign(0.008) TCGA-NH-A6GC-01 8 134108511 134108511 G A TG Missense_Mutation p.R2489H 0.28 tolerated(0.06) benign(0.035) TCGA-NH-A6GC-01 8 143607955 143607955 G T BAI1 Missense_Mutation p.G1122V 0.52 deleterious(0) probably_damaging(0.988) TCGA-NH-A6GC-01 8 145732515 145732515 T C GPT 3'UTR 0.27 TCGA-NH-A6GC-01 8 26366187 26366187 C T PNMA2 Missense_Mutation p.D29N 0.60 tolerated(0.16) benign(0.004) TCGA-NH-A6GC-01 8 38187320 38187320 C A WHSC1L1 Missense_Mutation p.R386I 0.26 deleterious(0) probably_damaging(0.999) TCGA-NH-A6GC-01 8 88885718 88885718 G A DCAF4L2 Missense_Mutation p.A161V 0.45 deleterious(0) possibly_damaging(0.848) TCGA-NH-A6GC-01 8 93029685 93029685 G C RUNX1T1 Intron 0.27 TCGA-NH-A6GC-01 9 115652383 115652383 A G SLC46A2 Silent p.H193H 0.16 TCGA-NH-A6GC-01 9 13107002 13107002 G A MPDZ Missense_Mutation p.R2030W 0.57 deleterious(0) probably_damaging(0.991) TCGA-NH-A6GC-01 9 134736060 134736060 C G MED27 Splice_Site p.X268_splice 0.17 TCGA-NH-A6GC-01 9 141107615 141107615 G T FAM157B RNA 0.13 TCGA-NH-A6GC-01 9 20413909 20413909 C A MLLT3 Missense_Mutation p.S312I 0.32 deleterious(0.03) benign(0.282) TCGA-NH-A6GC-01 9 35752025 35752025 C A RGP1 Missense_Mutation p.P279T 0.18 tolerated(0.65) benign(0.159) TCGA-NH-A6GC-01 9 90264949 90264949 C A DAPK1 Silent p.P514P 0.18 TCGA-NH-A6GC-01 9 99799838 99799838 G A CTSV Silent p.H62H 0.11 TCGA-NH-A6GC-01 X 152713247 152713247 A G TREX2 5'UTR 0.67 TCGA-NH-A8F7-01 10 116061185 116061185 G T AFAP1L2 Silent p.I490I 0.17 TCGA-NH-A8F7-01 10 118236640 118236640 T C PNLIPRP3 Missense_Mutation p.I460T 0.17 tolerated(0.12) benign(0.006) TCGA-NH-A8F7-01 10 125521405 125521405 C A CPXM2 Missense_Mutation p.W587L 0.48 deleterious(0) possibly_damaging(0.805) TCGA-NH-A8F7-01 10 27431346 27431346 T G YME1L1 Missense_Mutation p.S191R 0.41 tolerated(0.53) benign(0.001) TCGA-NH-A8F7-01 10 3178680 3178680 G A PFKP Missense_Mutation p.R755Q 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-NH-A8F7-01 10 47088010 47088010 C A NPY4R 3'UTR 0.11 TCGA-NH-A8F7-01 10 50018749 50018749 A T WDFY4 Missense_Mutation p.E1671D 0.12 tolerated(0.28) benign(0.027) TCGA-NH-A8F7-01 10 55568784 55568784 C T PCDH15 Missense_Mutation p.G610S 0.14 tolerated_low_confidence(0.12) unknown(0) TCGA-NH-A8F7-01 11 117329480 117329480 G T DSCAML1 Silent p.T1246T 0.22 TCGA-NH-A8F7-01 11 117651410 117651410 G A DSCAML1 Silent p.S114S 0.33 TCGA-NH-A8F7-01 11 17452342 17452342 G A ABCC8 Intron 0.65 TCGA-NH-A8F7-01 11 55587472 55587472 C T OR5D18 Missense_Mutation p.R123C 0.29 deleterious(0.01) benign(0.207) TCGA-NH-A8F7-01 11 64111651 64111651 G A CCDC88B Silent p.E546E 0.37 TCGA-NH-A8F7-01 11 67261163 67261163 C T PITPNM1 Missense_Mutation p.V1052I 0.25 deleterious(0) probably_damaging(0.998) TCGA-NH-A8F7-01 11 92534841 92534841 A G FAT3 Missense_Mutation p.T2888A 0.07 benign(0.001) TCGA-NH-A8F7-01 12 103232875 103232875 G T PAH 3'UTR 0.22 TCGA-NH-A8F7-01 12 10598949 10598949 G T KLRC1 3'UTR 0.85 TCGA-NH-A8F7-01 12 113328800 113328800 C T RPH3A Silent p.F589F 0.51 TCGA-NH-A8F7-01 12 129190408 129190408 G A TMEM132C Missense_Mutation p.M965I 0.57 tolerated(0.39) benign(0.025) TCGA-NH-A8F7-01 12 130941126 130941126 G A RIMBP2 Silent p.S74S 0.64 TCGA-NH-A8F7-01 12 131605416 131605416 C T GPR133 Silent p.G711G 0.62 TCGA-NH-A8F7-01 12 18691231 18691231 G T PIK3C2G Missense_Mutation p.L1114F 0.85 deleterious(0) probably_damaging(0.993) TCGA-NH-A8F7-01 12 49495055 49495055 C T LMBR1L Missense_Mutation p.V354I 0.55 tolerated(0.13) benign(0.002) TCGA-NH-A8F7-01 12 50195707 50195707 T C NCKAP5L Missense_Mutation p.D92G 0.59 deleterious(0) probably_damaging(0.999) TCGA-NH-A8F7-01 12 53427775 53427775 C T EIF4B Missense_Mutation p.R389C 0.32 deleterious(0) probably_damaging(0.996) TCGA-NH-A8F7-01 12 80660371 80660371 G T OTOGL Missense_Mutation p.D780Y 0.05 deleterious(0.01) possibly_damaging(0.726) TCGA-NH-A8F7-01 13 113487323 113487323 C T ATP11A Silent p.V515V 0.21 TCGA-NH-A8F7-01 13 20641395 20641395 A C ZMYM2 Missense_Mutation p.L1106F 0.19 tolerated(0.05) probably_damaging(0.924) TCGA-NH-A8F7-01 13 25418062 25418062 T C RNF17 Silent p.P928P 0.31 TCGA-NH-A8F7-01 13 29675068 29675068 G A MTUS2 Missense_Mutation p.G879R 0.42 tolerated(0.55) benign(0.034) TCGA-NH-A8F7-01 13 88328996 88328996 C T SLITRK5 Silent p.R451R 0.30 TCGA-NH-A8F7-01 13 95363807 95363809 GCG - SOX21 In_Frame_Del p.A166del 0.10 TCGA-NH-A8F7-01 14 105268173 105268173 C T ZBTB42 Silent p.S213S 0.35 TCGA-NH-A8F7-01 14 105418938 105418938 C T AHNAK2 Silent p.A950A 0.42 TCGA-NH-A8F7-01 14 58768337 58768337 G T ARID4A Missense_Mutation p.V16F 0.44 deleterious(0) probably_damaging(0.999) TCGA-NH-A8F7-01 15 24921761 24921761 C A NPAP1 Silent p.A249A 0.25 TCGA-NH-A8F7-01 15 54307549 54307549 C A UNC13C Missense_Mutation p.Q817K 0.04 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-NH-A8F7-01 15 54307729 54307729 G C UNC13C Missense_Mutation p.D877H 0.09 tolerated_low_confidence(0.3) benign(0.037) TCGA-NH-A8F7-01 15 68468052 68468052 T G PIAS1 Missense_Mutation p.M416R 0.28 deleterious(0) probably_damaging(0.942) TCGA-NH-A8F7-01 15 76016553 76016553 A C ODF3L1 Missense_Mutation p.K5Q 0.30 tolerated_low_confidence(0.08) benign(0.01) TCGA-NH-A8F7-01 15 78888849 78888849 C A CHRNA3 3'UTR 0.17 TCGA-NH-A8F7-01 15 93595472 93595472 G A RGMA Silent p.A140A 0.50 TCGA-NH-A8F7-01 16 30522458 30522459 - T ITGAL Splice_Site p.X929_splice 0.19 TCGA-NH-A8F7-01 16 314067 314067 C T ITFG3 Missense_Mutation p.P414L 0.63 tolerated(0.29) possibly_damaging(0.861) TCGA-NH-A8F7-01 16 3611790 3611790 C T NLRC3 Splice_Site p.X690_splice 0.25 TCGA-NH-A8F7-01 16 4559457 4559457 G A HMOX2 Silent p.E247E 0.59 TCGA-NH-A8F7-01 16 58621718 58621718 G A CNOT1 Missense_Mutation p.S92F 0.15 deleterious(0) benign(0.051) TCGA-NH-A8F7-01 16 66657310 66657310 G A CMTM4 Silent p.A153A 0.29 TCGA-NH-A8F7-01 16 89345796 89345796 C T ANKRD11 Missense_Mutation p.R2385H 0.32 probably_damaging(0.999) TCGA-NH-A8F7-01 16 90162530 90162530 A G TUBB8P7 RNA 0.08 TCGA-NH-A8F7-01 17 10303974 10303974 G A MYH8 Silent p.A1156A 0.47 TCGA-NH-A8F7-01 17 18156903 18156903 G A FLII Silent p.H270H 0.40 TCGA-NH-A8F7-01 17 40705429 40705429 G A HSD17B1 Intron 0.26 TCGA-NH-A8F7-01 17 42335090 42335090 A G SLC4A1 Silent p.A456A 0.37 TCGA-NH-A8F7-01 17 43473932 43473932 C T ARHGAP27 Silent p.A357A 0.39 TCGA-NH-A8F7-01 17 44617561 44617561 C G LRRC37A2 Missense_Mutation p.L976V 0.13 deleterious(0) benign(0.097) TCGA-NH-A8F7-01 17 73257962 73257962 G A MRPS7 5'UTR 0.05 TCGA-NH-A8F7-01 17 7577077 7577082 CTCTTC - TP53 In_Frame_Del p.E286_E287del 0.79 TCGA-NH-A8F7-01 18 18534825 18534825 C A ROCK1 Missense_Mutation p.A1258S 0.39 deleterious(0) probably_damaging(1) TCGA-NH-A8F7-01 18 44554578 44554578 G A TCEB3C Nonsense_Mutation p.R546* 0.05 TCGA-NH-A8F7-01 18 66364409 66364409 A T TMX3 Intron 0.33 TCGA-NH-A8F7-01 18 7038930 7038930 G A LAMA1 Missense_Mutation p.A481V 0.38 deleterious(0.01) benign(0.014) TCGA-NH-A8F7-01 19 18255299 18255299 G A MAST3 Missense_Mutation p.A841T 0.12 tolerated_low_confidence(0.59) benign(0.001) TCGA-NH-A8F7-01 19 2994058 2994058 G A TLE6 Missense_Mutation p.V527I 0.04 tolerated(1) benign(0.001) TCGA-NH-A8F7-01 19 33793375 33793375 G A CEBPA 5'UTR 0.49 TCGA-NH-A8F7-01 19 3532643 3532643 G A FZR1 Missense_Mutation p.E413K 0.38 deleterious(0) probably_damaging(0.988) TCGA-NH-A8F7-01 19 38379229 38379229 C T WDR87 Silent p.A1655A 0.10 TCGA-NH-A8F7-01 19 41454994 41454994 C T AC092071.1 3'Flank 0.13 TCGA-NH-A8F7-01 19 42754507 42754507 T C ERF Missense_Mutation p.Y78C 0.61 deleterious(0) probably_damaging(1) TCGA-NH-A8F7-01 19 44130440 44130440 C T CADM4 Missense_Mutation p.G167E 0.32 deleterious(0.04) possibly_damaging(0.903) TCGA-NH-A8F7-01 19 47960313 47960313 C T SLC8A2 Missense_Mutation p.C405Y 0.10 deleterious(0) probably_damaging(1) TCGA-NH-A8F7-01 19 49794012 49794012 G A SLC6A16 Silent p.D597D 0.27 TCGA-NH-A8F7-01 19 5135484 5135484 G A KDM4B Silent p.T740T 0.21 TCGA-NH-A8F7-01 19 55610365 55610365 C T PPP1R12C Missense_Mutation p.R277H 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-NH-A8F7-01 19 56303708 56303708 C T NLRP11 Silent p.T824T 0.44 TCGA-NH-A8F7-01 19 57640583 57640583 T G USP29 Missense_Mutation p.N180K 0.20 tolerated(0.06) benign(0.19) TCGA-NH-A8F7-01 19 58437781 58437781 G A ZNF418 Missense_Mutation p.P590S 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-NH-A8F7-01 19 6007071 6007071 G A RFX2 Nonsense_Mutation p.Q452* 0.18 TCGA-NH-A8F7-01 1 100525433 100525433 G A HIAT1 Splice_Site p.X82_splice 0.31 TCGA-NH-A8F7-01 1 11561953 11561953 G A PTCHD2 Missense_Mutation p.E302K 0.29 deleterious(0) probably_damaging(0.994) TCGA-NH-A8F7-01 1 150529773 150529773 G C ADAMTSL4 Missense_Mutation p.R670P 0.19 deleterious(0) probably_damaging(0.923) TCGA-NH-A8F7-01 1 151752497 151752497 C A TDRKH Missense_Mutation p.Q117H 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-NH-A8F7-01 1 153660160 153660160 C T NPR1 Missense_Mutation p.R715W 0.17 deleterious(0.01) probably_damaging(0.932) TCGA-NH-A8F7-01 1 182555901 182555901 G A RNASEL Missense_Mutation p.T14M 0.30 tolerated(0.14) benign(0.014) TCGA-NH-A8F7-01 1 19027166 19027166 G A PAX7 Missense_Mutation p.R269H 0.53 deleterious(0) probably_damaging(1) TCGA-NH-A8F7-01 1 196254879 196254879 C A KCNT2 Nonsense_Mutation p.E869* 0.28 TCGA-NH-A8F7-01 1 205892737 205892737 T C SLC26A9 Missense_Mutation p.N501D 0.25 tolerated(0.05) possibly_damaging(0.901) TCGA-NH-A8F7-01 1 237947310 237947310 G A RYR2 Missense_Mutation p.V4100I 0.27 probably_damaging(0.995) TCGA-NH-A8F7-01 1 32740386 32740386 G A LCK Missense_Mutation p.E52K 0.32 tolerated(0.37) benign(0.016) TCGA-NH-A8F7-01 1 3541807 3541807 C T TPRG1L Silent p.R57R 0.69 TCGA-NH-A8F7-01 1 52937717 52937717 G C ZCCHC11 Missense_Mutation p.P929A 0.56 deleterious(0) possibly_damaging(0.769) TCGA-NH-A8F7-01 1 977023 977023 C T AGRN Missense_Mutation p.S373L 0.29 tolerated(0.11) possibly_damaging(0.651) TCGA-NH-A8F7-01 20 36850942 36850942 G A KIAA1755 Missense_Mutation p.P776S 0.21 deleterious(0.02) probably_damaging(1) TCGA-NH-A8F7-01 20 42788872 42788872 G A JPH2 Silent p.S185S 0.06 TCGA-NH-A8F7-01 20 60715953 60715955 CTT - PSMA7 In_Frame_Del p.K48del 0.20 TCGA-NH-A8F7-01 20 62126210 62126210 A G EEF1A2 Missense_Mutation p.F190S 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-NH-A8F7-01 21 32410793 32410793 C A KRTAP19-8 5'UTR 0.43 TCGA-NH-A8F7-01 21 41450902 41450902 G T DSCAM Missense_Mutation p.P1475T 0.08 deleterious(0) possibly_damaging(0.833) TCGA-NH-A8F7-01 22 36919275 36919275 T A EIF3D Missense_Mutation p.K149I 0.37 tolerated(0.31) benign(0.326) TCGA-NH-A8F7-01 2 110053350 110053350 G T SH3RF3 Missense_Mutation p.V526L 0.11 deleterious(0.02) benign(0.08) TCGA-NH-A8F7-01 2 170850848 170850848 G A UBR3 Missense_Mutation p.R1267H 0.60 tolerated(0.1) possibly_damaging(0.852) TCGA-NH-A8F7-01 2 178481747 178481747 C G TTC30A Missense_Mutation p.E561D 0.66 tolerated(0.41) benign(0.007) TCGA-NH-A8F7-01 2 178481753 178481753 G A TTC30A Silent p.N559N 0.64 TCGA-NH-A8F7-01 2 179529214 179529214 G A TTN Nonsense_Mutation p.Q12085* 0.11 TCGA-NH-A8F7-01 2 179742830 179742830 G T CCDC141 Missense_Mutation p.T587N 0.13 tolerated(0.31) benign(0.013) TCGA-NH-A8F7-01 2 189870937 189870937 C A COL3A1 Missense_Mutation p.N1015K 0.21 probably_damaging(0.996) TCGA-NH-A8F7-01 2 215274934 215274934 C A SPAG16 Missense_Mutation p.H597Q 0.22 tolerated(0.65) benign(0.048) TCGA-NH-A8F7-01 2 215645336 215645336 G A BARD1 Missense_Mutation p.A421V 0.16 tolerated(0.33) benign(0.005) TCGA-NH-A8F7-01 2 25358397 25358397 G A EFR3B Missense_Mutation p.R458H 0.52 deleterious(0) benign(0.429) TCGA-NH-A8F7-01 2 31595150 31595150 G A XDH Silent p.Y600Y 0.05 TCGA-NH-A8F7-01 2 45171974 45171974 T C SIX3 3'UTR 0.04 TCGA-NH-A8F7-01 2 56420246 56420246 C T CCDC85A Missense_Mutation p.T304M 0.26 tolerated_low_confidence(0.13) benign(0.03) TCGA-NH-A8F7-01 2 73679322 73679322 A T ALMS1 Missense_Mutation p.I1889L 0.15 benign(0.406) TCGA-NH-A8F7-01 3 142775369 142775370 - A U2SURP 3'UTR 0.13 TCGA-NH-A8F7-01 3 174814798 174814798 C A NAALADL2 Missense_Mutation p.Q88K 0.31 tolerated(0.08) possibly_damaging(0.783) TCGA-NH-A8F7-01 3 179143982 179143982 C T GNB4 Missense_Mutation p.E3K 0.52 tolerated(0.28) benign(0) TCGA-NH-A8F7-01 3 186392936 186392936 G T HRG Missense_Mutation p.S233I 0.23 deleterious(0.05) benign(0.403) TCGA-NH-A8F7-01 3 37567549 37567549 G A ITGA9 Missense_Mutation p.V454M 0.32 deleterious(0) probably_damaging(0.97) TCGA-NH-A8F7-01 3 69243021 69243021 G A FRMD4B Missense_Mutation p.P498S 0.40 deleterious(0.05) probably_damaging(1) TCGA-NH-A8F7-01 3 99514668 99514668 C T COL8A1 Silent p.N641N 0.52 TCGA-NH-A8F7-01 4 156135646 156135646 C A NPY2R Silent p.I185I 0.16 TCGA-NH-A8F7-01 4 186379494 186379494 G A CCDC110 Silent p.Y749Y 0.15 TCGA-NH-A8F7-01 4 54343017 54343017 C T LNX1 Missense_Mutation p.E599K 0.06 tolerated(0.28) possibly_damaging(0.579) TCGA-NH-A8F7-01 4 77184954 77184954 C T FAM47E Missense_Mutation p.T173M 0.25 tolerated(0.12) benign(0.221) TCGA-NH-A8F7-01 4 77278552 77278552 C A CCDC158 Missense_Mutation p.K716N 0.18 deleterious(0.03) benign(0.265) TCGA-NH-A8F7-01 4 83839374 83839374 C A THAP9 Missense_Mutation p.A670E 0.55 deleterious(0.02) benign(0.044) TCGA-NH-A8F7-01 5 112173597 112173597 T A APC Nonsense_Mutation p.L769* 0.56 TCGA-NH-A8F7-01 5 112175324 112175324 G T APC Nonsense_Mutation p.E1345* 0.31 TCGA-NH-A8F7-01 5 127800577 127800577 G C FBN2 Missense_Mutation p.N222K 0.38 tolerated(0.24) possibly_damaging(0.727) TCGA-NH-A8F7-01 5 139931582 139931582 G A SRA1 Silent p.C125C 0.46 TCGA-NH-A8F7-01 5 140554283 140554283 G A PCDHB7 Missense_Mutation p.E623K 0.11 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-NH-A8F7-01 5 140754045 140754045 G A PCDHGA6 Missense_Mutation p.R132Q 0.11 tolerated_low_confidence(0.54) benign(0.006) TCGA-NH-A8F7-01 5 140797992 140797992 G T PCDHGB7 Missense_Mutation p.G189V 0.58 tolerated(0.2) possibly_damaging(0.491) TCGA-NH-A8F7-01 5 140811404 140811423 TCTCCCAGAGGGACATTAAT - PCDHGA12 Frame_Shift_Del p.S360Cfs*7 0.15 TCGA-NH-A8F7-01 5 156021942 156021942 G T SGCD Missense_Mutation p.G128V 0.62 deleterious(0.01) probably_damaging(0.986) TCGA-NH-A8F7-01 5 32097420 32097420 A - PDZD2 Frame_Shift_Del p.E2629Kfs*37 0.17 TCGA-NH-A8F7-01 5 44388678 44388678 G C FGF10 Missense_Mutation p.T36S 0.25 tolerated(0.28) benign(0.007) TCGA-NH-A8F7-01 5 64814069 64814069 A G CENPK 3'UTR 0.20 TCGA-NH-A8F7-01 5 80911292 80911292 G A SSBP2 Silent p.Y94Y 0.52 TCGA-NH-A8F7-01 5 82875930 82875930 C T VCAN Missense_Mutation p.R3338W 0.29 deleterious(0) probably_damaging(0.999) TCGA-NH-A8F7-01 6 170118882 170118882 A C PHF10 Splice_Site p.X109_splice 0.20 TCGA-NH-A8F7-01 6 34100975 34100975 G A GRM4 Missense_Mutation p.T100M 0.34 deleterious(0.03) probably_damaging(1) TCGA-NH-A8F7-01 6 43100572 43100572 G C PTK7 Intron 0.21 TCGA-NH-A8F7-01 6 76407234 76407234 G A SENP6 Splice_Site p.X763_splice 0.54 TCGA-NH-A8F7-01 7 11457083 11457083 A C THSD7A Missense_Mutation p.C1177W 0.20 deleterious(0) probably_damaging(1) TCGA-NH-A8F7-01 7 120978965 120978965 C T WNT16 Missense_Mutation p.R222C 0.07 deleterious(0) probably_damaging(1) TCGA-NH-A8F7-01 7 134346236 134346236 C T BPGM 5'UTR 0.29 TCGA-NH-A8F7-01 7 143956075 143956075 G T OR2A7 Nonsense_Mutation p.S216* 0.09 TCGA-NH-A8F7-01 7 4799207 4799207 C T FOXK1 Silent p.D559D 0.33 TCGA-NH-A8F7-01 7 5338891 5338891 G A SLC29A4 Missense_Mutation p.V348M 0.39 tolerated(0.11) benign(0.042) TCGA-NH-A8F7-01 7 5567276 5567276 A C ACTB 3'UTR 0.48 TCGA-NH-A8F7-01 7 90897698 90897698 G C FZD1 3'UTR 0.08 TCGA-NH-A8F7-01 8 139611096 139611096 C G COL22A1 Missense_Mutation p.G1411R 0.36 unknown(0) TCGA-NH-A8F7-01 8 1626556 1626556 G A DLGAP2 Missense_Mutation p.R742Q 0.52 tolerated(0.54) probably_damaging(0.947) TCGA-NH-A8F7-01 8 31498050 31498050 C T NRG1 Missense_Mutation p.R37C 0.07 tolerated_low_confidence(0.1) benign(0.434) TCGA-NH-A8F7-01 8 38034210 38034210 C G BAG4 5'UTR 0.30 TCGA-NH-A8F7-01 8 69046355 69046355 T A PREX2 Nonsense_Mutation p.C1276* 0.14 TCGA-NH-A8F7-01 9 117124689 117124689 C T AKNA Missense_Mutation p.R638H 0.15 tolerated(0.08) benign(0.01) TCGA-NH-A8F7-01 9 125652783 125652783 G A RC3H2 Nonsense_Mutation p.Q131* 0.25 TCGA-NH-A8F7-01 9 127765402 127765402 C T SCAI Silent p.A375A 0.25 TCGA-NH-A8F7-01 9 15846756 15846756 C G CCDC171 Silent p.L1108L 0.42 TCGA-NH-A8F7-01 9 40773119 40773119 C A ZNF658 Missense_Mutation p.C719F 0.29 deleterious(0) probably_damaging(0.997) TCGA-NH-A8F7-01 9 78947451 78947451 A C PCSK5 Missense_Mutation p.H1531P 0.22 deleterious(0.01) possibly_damaging(0.701) TCGA-NH-A8F7-01 X 100076520 100076520 G A CSTF2 Silent p.G21G 0.18 TCGA-NH-A8F7-01 X 10085538 10085538 C T WWC3 Missense_Mutation p.P480L 0.28 deleterious(0.04) probably_damaging(0.97) TCGA-NH-A8F7-01 X 105178334 105178334 G T NRK Missense_Mutation p.D1134Y 0.21 tolerated(0.13) benign(0.015) TCGA-NH-A8F7-01 X 107431245 107431245 G A COL4A6 Missense_Mutation p.P535S 0.74 benign(0.403) TCGA-NH-A8F7-01 X 118717391 118717392 - AAACAC UBE2A 3'UTR 0.33 TCGA-NH-A8F7-01 X 128674424 128674424 C T OCRL Missense_Mutation p.P3L 0.23 deleterious_low_confidence(0.02) benign(0.001) TCGA-NH-A8F7-01 X 129629691 129629691 C T RP1-274L7.1 Intron 0.07 TCGA-NH-A8F7-01 X 134023140 134023140 C G MOSPD1 3'UTR 0.45 TCGA-NH-A8F7-01 X 20212358 20212358 A G RPS6KA3 Silent p.L145L 0.23 TCGA-NH-A8F7-01 X 27998182 27998182 C A DCAF8L1 Missense_Mutation p.G424C 0.09 deleterious(0) benign(0.302) TCGA-NH-A8F7-01 X 48762717 48762717 C T SLC35A2 Missense_Mutation p.V157M 0.12 deleterious(0) probably_damaging(0.946) TCGA-NH-A8F7-01 X 53111759 53111761 CCG - TSPYL2 In_Frame_Del p.P33del 0.11 TCGA-NH-A8F7-01 X 5947335 5947335 C T NLGN4X Missense_Mutation p.R204H 0.60 deleterious(0) probably_damaging(0.988) TCGA-NH-A8F7-01 X 66766432 66766432 G A AR Missense_Mutation p.G482S 0.07 tolerated_low_confidence(0.08) benign(0.108) TCGA-NH-A8F7-01 X 77111062 77111062 C T MAGT1 Missense_Mutation p.G265D 0.20 deleterious(0) probably_damaging(1) TCGA-NH-A8F7-01 X 80001090 80001090 C T BRWD3 Missense_Mutation p.R190Q 0.20 deleterious(0.02) possibly_damaging(0.603) TCGA-NH-A8F8-01 10 108466377 108466377 G A SORCS1 Missense_Mutation p.R387W 0.27 deleterious(0) probably_damaging(0.999) TCGA-NH-A8F8-01 10 134999773 134999773 G A KNDC1 Silent p.T307T 0.34 TCGA-NH-A8F8-01 10 1405570 1405570 C T ADARB2 Missense_Mutation p.A244T 0.18 tolerated(0.66) benign(0.001) TCGA-NH-A8F8-01 10 35928161 35928161 A G FZD8 3'UTR 0.16 TCGA-NH-A8F8-01 11 125548036 125548036 G T ACRV1 Missense_Mutation p.S70Y 0.32 deleterious(0) probably_damaging(0.992) TCGA-NH-A8F8-01 11 128772326 128772326 C T C11orf45 3'UTR 0.07 TCGA-NH-A8F8-01 11 48510483 48510483 G A OR4A47 Missense_Mutation p.V47I 0.30 tolerated_low_confidence(0.65) benign(0.013) TCGA-NH-A8F8-01 11 88911689 88911689 G T TYR Missense_Mutation p.G190W 0.32 deleterious(0) probably_damaging(1) TCGA-NH-A8F8-01 12 104042489 104042489 C T STAB2 Silent p.Y354Y 0.32 TCGA-NH-A8F8-01 12 122723266 122723266 G A VPS33A Silent p.N390N 0.33 TCGA-NH-A8F8-01 12 15748146 15748146 G A PTPRO Intron 0.36 TCGA-NH-A8F8-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.28 deleterious(0) possibly_damaging(0.479) TCGA-NH-A8F8-01 12 2904243 2904243 C T FKBP4 5'UTR 0.44 TCGA-NH-A8F8-01 12 41410684 41410684 C A CNTN1 Nonsense_Mutation p.Y795* 0.32 TCGA-NH-A8F8-01 12 56994609 56994609 G A BAZ2A Silent p.I1488I 0.41 TCGA-NH-A8F8-01 12 58120475 58120475 C G AGAP2 Missense_Mutation p.G1147R 0.44 deleterious(0) probably_damaging(1) TCGA-NH-A8F8-01 12 6709382 6709382 C T CHD4 Splice_Site p.X414_splice 0.17 TCGA-NH-A8F8-01 12 72307650 72307650 G A TBC1D15 Missense_Mutation p.V466M 0.22 deleterious(0) probably_damaging(1) TCGA-NH-A8F8-01 12 75441977 75441977 G A KCNC2 Missense_Mutation p.T579M 0.44 deleterious_low_confidence(0.05) possibly_damaging(0.587) TCGA-NH-A8F8-01 12 96181193 96181193 G A NTN4 Missense_Mutation p.R37W 0.29 deleterious(0.03) possibly_damaging(0.832) TCGA-NH-A8F8-01 13 20224291 20224291 A G MPHOSPH8 Silent p.S489S 0.04 TCGA-NH-A8F8-01 13 27333954 27333954 T C GPR12 Missense_Mutation p.D4G 0.57 tolerated_low_confidence(0.3) benign(0.086) TCGA-NH-A8F8-01 13 46287967 46287967 G A SPERT Silent p.A269A 0.46 TCGA-NH-A8F8-01 13 58209167 58209167 C T PCDH17 Silent p.H829H 0.22 TCGA-NH-A8F8-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.59 deleterious(0) probably_damaging(0.999) TCGA-NH-A8F8-01 14 20444015 20444015 G A OR4K15 Missense_Mutation p.R113H 0.55 tolerated(1) benign(0) TCGA-NH-A8F8-01 14 45669217 45669217 C T FANCM 3'UTR 0.06 TCGA-NH-A8F8-01 14 47613415 47613415 A T MDGA2 Missense_Mutation p.Y220N 0.47 tolerated(0.3) benign(0.406) TCGA-NH-A8F8-01 14 57268307 57268307 G A OTX2 3'UTR 0.68 TCGA-NH-A8F8-01 14 75515992 75515992 G T MLH3 Missense_Mutation p.L123M 0.53 tolerated(0.11) benign(0.209) TCGA-NH-A8F8-01 15 23810913 23810913 G A MKRN3 5'UTR 0.27 TCGA-NH-A8F8-01 15 65394957 65394957 C T UBAP1L Silent p.P62P 0.37 TCGA-NH-A8F8-01 15 76632739 76632739 G A ISL2 Missense_Mutation p.A212T 0.34 deleterious(0.02) possibly_damaging(0.833) TCGA-NH-A8F8-01 16 1252146 1252146 C A CACNA1H Missense_Mutation p.P566T 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-NH-A8F8-01 16 29913003 29913003 G A ASPHD1 Silent p.P237P 0.13 TCGA-NH-A8F8-01 16 68289732 68289732 G A PLA2G15 Missense_Mutation p.G189E 0.32 deleterious(0.04) possibly_damaging(0.862) TCGA-NH-A8F8-01 16 88505587 88505587 G A ZNF469 Silent p.R3875R 0.33 TCGA-NH-A8F8-01 17 20806115 20806115 G A RP11-344E13.3 RNA 0.69 TCGA-NH-A8F8-01 17 42433558 42433558 C A FAM171A2 Missense_Mutation p.R254I 0.41 deleterious(0.05) probably_damaging(0.996) TCGA-NH-A8F8-01 17 48560755 48560755 G A RSAD1 Missense_Mutation p.R320Q 0.32 deleterious(0.02) probably_damaging(0.95) TCGA-NH-A8F8-01 17 61511760 61511760 G A CYB561 3'UTR 0.29 TCGA-NH-A8F8-01 17 65336922 65336922 C A PSMD12 3'UTR 0.36 TCGA-NH-A8F8-01 17 7329690 7329690 G A C17orf74 Missense_Mutation p.R127H 0.50 tolerated(0.36) probably_damaging(0.923) TCGA-NH-A8F8-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.44 tolerated(0.13) possibly_damaging(0.631) TCGA-NH-A8F8-01 17 76441648 76441648 C T DNAH17 Missense_Mutation p.G3762R 0.33 possibly_damaging(0.757) TCGA-NH-A8F8-01 18 29104749 29104749 T C DSG2 Silent p.D304D 0.53 TCGA-NH-A8F8-01 18 49867223 49867223 G T DCC Missense_Mutation p.L22F 0.31 tolerated(0.1) benign(0.019) TCGA-NH-A8F8-01 18 59958796 59958796 G A KIAA1468 Missense_Mutation p.V1131I 0.40 tolerated(0.25) benign(0.002) TCGA-NH-A8F8-01 19 1108833 1108833 G T SBNO2 Missense_Mutation p.S1187R 0.08 tolerated(0.56) possibly_damaging(0.461) TCGA-NH-A8F8-01 19 12783866 12783866 C T WDR83 Silent p.L207L 0.10 TCGA-NH-A8F8-01 19 18794492 18794492 G A CRTC1 5'UTR 0.42 TCGA-NH-A8F8-01 19 33110403 33110403 G A ANKRD27 Silent p.S628S 0.34 TCGA-NH-A8F8-01 19 36214166 36214166 C T KMT2B Nonsense_Mutation p.Q998* 0.42 TCGA-NH-A8F8-01 19 41381351 41381351 A T CYP2A7 3'UTR 0.30 TCGA-NH-A8F8-01 19 42092911 42092911 G T CEACAM21 3'UTR 0.40 TCGA-NH-A8F8-01 19 47969377 47969377 G A SLC8A2 Missense_Mutation p.A95V 0.43 deleterious(0) probably_damaging(0.994) TCGA-NH-A8F8-01 19 51890631 51890631 T G LIM2 Missense_Mutation p.M23L 0.05 tolerated(0.41) benign(0.009) TCGA-NH-A8F8-01 19 54754803 54754803 C T LILRB5 Intron 0.46 TCGA-NH-A8F8-01 19 56104159 56104159 T C FIZ1 Missense_Mutation p.E383G 0.30 tolerated(0.33) benign(0.001) TCGA-NH-A8F8-01 19 56416444 56416444 G T NLRP13 Missense_Mutation p.Q828K 0.48 tolerated(0.59) benign(0.122) TCGA-NH-A8F8-01 19 58193504 58193504 G T AC003006.7 5'UTR 0.07 TCGA-NH-A8F8-01 19 8183831 8183831 C A FBN3 Missense_Mutation p.C1096F 0.38 deleterious(0) probably_damaging(0.991) TCGA-NH-A8F8-01 1 114483037 114483037 C T HIPK1 Missense_Mutation p.P11L 0.30 deleterious(0) unknown(0) TCGA-NH-A8F8-01 1 145558909 145558909 C T ANKRD35 Silent p.G176G 0.36 TCGA-NH-A8F8-01 1 152759797 152759797 C A LCE1E Missense_Mutation p.Q8K 0.04 tolerated_low_confidence(1) unknown(0) TCGA-NH-A8F8-01 1 154920773 154920773 C T PBXIP1 Missense_Mutation p.R160Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-NH-A8F8-01 1 216373340 216373341 - C USH2A Frame_Shift_Ins p.V1147Gfs*56 0.27 TCGA-NH-A8F8-01 1 220957368 220957368 C A MARC2 3'UTR 0.14 TCGA-NH-A8F8-01 1 43900908 43900908 G A SZT2 Missense_Mutation p.C1924Y 0.52 deleterious(0.02) probably_damaging(0.998) TCGA-NH-A8F8-01 20 16030584 16030584 G A MACROD2 3'UTR 0.48 TCGA-NH-A8F8-01 20 1961130 1961130 C A PDYN Missense_Mutation p.D202Y 0.56 deleterious(0) probably_damaging(0.987) TCGA-NH-A8F8-01 20 23016852 23016852 C T SSTR4 Silent p.R244R 0.50 TCGA-NH-A8F8-01 20 3209898 3209898 G A SLC4A11 Missense_Mutation p.R664C 0.62 deleterious(0.01) possibly_damaging(0.886) TCGA-NH-A8F8-01 20 43378781 43378781 G A KCNK15 Missense_Mutation p.A99T 0.20 tolerated(0.07) benign(0.038) TCGA-NH-A8F8-01 20 47886913 47886913 C T ZNFX1 Missense_Mutation p.R479Q 0.08 tolerated(0.53) benign(0.001) TCGA-NH-A8F8-01 20 5843875 5843875 A T C20orf196 Missense_Mutation p.K128N 0.47 deleterious(0) probably_damaging(0.933) TCGA-NH-A8F8-01 20 61162258 61162258 C T C20orf166 Missense_Mutation p.T24I 0.07 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-NH-A8F8-01 20 62121913 62121913 C T EEF1A2 Silent p.S316S 0.11 TCGA-NH-A8F8-01 20 62598772 62598772 G A ZNF512B Missense_Mutation p.R76W 0.74 deleterious(0) probably_damaging(0.999) TCGA-NH-A8F8-01 22 22516762 22516762 C A IGLV4-60 Intron 0.25 TCGA-NH-A8F8-01 22 37771664 37771664 C T ELFN2 5'UTR 0.78 TCGA-NH-A8F8-01 22 40662010 40662010 G - TNRC6B Frame_Shift_Del p.Y593Tfs*16 0.42 TCGA-NH-A8F8-01 22 45914634 45914634 C T FBLN1 Missense_Mutation p.S51L 0.68 deleterious(0) possibly_damaging(0.857) TCGA-NH-A8F8-01 22 50555697 50555697 C T MOV10L1 Silent p.R457R 0.69 TCGA-NH-A8F8-01 2 112856221 112856221 C T TMEM87B Missense_Mutation p.S441L 0.35 deleterious(0) probably_damaging(0.945) TCGA-NH-A8F8-01 2 121729615 121729615 G A GLI2 Silent p.P386P 0.35 TCGA-NH-A8F8-01 2 128400517 128400517 A G LIMS2 Missense_Mutation p.F188L 0.31 deleterious(0) benign(0.279) TCGA-NH-A8F8-01 2 137872791 137872791 G A THSD7B Missense_Mutation p.G433S 0.32 deleterious(0.01) possibly_damaging(0.509) TCGA-NH-A8F8-01 2 152695540 152695540 A C CACNB4 3'UTR 0.36 TCGA-NH-A8F8-01 2 162849654 162849654 T C DPP4 3'UTR 0.23 TCGA-NH-A8F8-01 2 170148769 170148769 C A LRP2 Nonsense_Mutation p.G255* 0.32 TCGA-NH-A8F8-01 2 171655305 171655305 C T ERICH2 Silent p.D124D 0.28 TCGA-NH-A8F8-01 2 172778971 172778971 G C HAT1 5'Flank 0.12 TCGA-NH-A8F8-01 2 179588595 179588595 G T TTN Missense_Mutation p.L7131I 0.32 TCGA-NH-A8F8-01 2 210678325 210678325 G A UNC80 Silent p.P320P 0.08 TCGA-NH-A8F8-01 2 212522498 212522498 T A ERBB4 Missense_Mutation p.T643S 0.18 tolerated(0.52) benign(0.005) TCGA-NH-A8F8-01 2 239049557 239049557 C A KLHL30 Missense_Mutation p.S54R 0.43 deleterious(0.04) possibly_damaging(0.598) TCGA-NH-A8F8-01 2 27167632 27167632 C T DPYSL5 Missense_Mutation p.R517W 0.45 deleterious(0.03) possibly_damaging(0.849) TCGA-NH-A8F8-01 2 37455977 37455977 A G CEBPZ Missense_Mutation p.I120T 0.42 tolerated(0.57) benign(0.001) TCGA-NH-A8F8-01 2 43452671 43452678 GCCGCGCT - ZFP36L2 Frame_Shift_Del p.S89Gfs*11 0.54 TCGA-NH-A8F8-01 2 5833195 5833195 C A SOX11 Silent p.P114P 0.21 TCGA-NH-A8F8-01 2 7160730 7160730 G T RNF144A Missense_Mutation p.C143F 0.33 deleterious(0) probably_damaging(1) TCGA-NH-A8F8-01 3 130947427 130947427 C T NEK11 Silent p.S485S 0.29 TCGA-NH-A8F8-01 3 149095273 149095273 C A TM4SF1 Missense_Mutation p.C21F 0.36 deleterious(0) probably_damaging(0.941) TCGA-NH-A8F8-01 3 17052629 17052629 A - PLCL2 Frame_Shift_Del p.E473Rfs*11 0.28 TCGA-NH-A8F8-01 3 195507695 195507695 G A MUC4 Missense_Mutation p.L3586F 0.21 possibly_damaging(0.881) TCGA-NH-A8F8-01 3 196438799 196438799 C T CEP19 Splice_Site 0.30 TCGA-NH-A8F8-01 3 361436 361436 G A CHL1 5'UTR 0.44 TCGA-NH-A8F8-01 3 57132101 57132101 C T IL17RD Missense_Mutation p.V544I 0.49 tolerated(0.17) benign(0.06) TCGA-NH-A8F8-01 3 75786529 75786529 G A ZNF717 Missense_Mutation p.H749Y 0.24 deleterious(0) benign(0.1) TCGA-NH-A8F8-01 3 95374180 95374180 G A MTHFD2P1 RNA 0.47 TCGA-NH-A8F8-01 4 10084653 10084653 C T WDR1 Missense_Mutation p.D397N 0.11 tolerated(0.11) benign(0.258) TCGA-NH-A8F8-01 4 140811666 140811666 C T MAML3 Silent p.E308E 0.32 TCGA-NH-A8F8-01 4 155410789 155410789 G A DCHS2 Silent p.H573H 0.31 TCGA-NH-A8F8-01 4 156138221 156138221 G A NPY2R 3'UTR 0.27 TCGA-NH-A8F8-01 4 3219604 3219604 G A HTT Silent p.T2389T 0.32 TCGA-NH-A8F8-01 4 40098880 40098880 A G N4BP2 5'UTR 0.28 TCGA-NH-A8F8-01 4 80328946 80328946 C T GK2 Missense_Mutation p.V137I 0.22 tolerated(0.09) benign(0.036) TCGA-NH-A8F8-01 4 96761558 96761558 G A PDHA2 Missense_Mutation p.R86H 0.31 deleterious(0) probably_damaging(0.986) TCGA-NH-A8F8-01 4 96762206 96762206 G A PDHA2 Missense_Mutation p.R302Q 0.33 deleterious(0) benign(0.302) TCGA-NH-A8F8-01 5 112170863 112170863 G A APC Splice_Site p.X653_splice 0.34 TCGA-NH-A8F8-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.30 TCGA-NH-A8F8-01 5 112437514 112437514 G T MCC Nonsense_Mutation p.C440* 0.41 TCGA-NH-A8F8-01 5 115782393 115782393 C T SEMA6A Silent p.T1003T 0.09 TCGA-NH-A8F8-01 5 13776686 13776686 G A DNAH5 Nonsense_Mutation p.R3079* 0.35 TCGA-NH-A8F8-01 5 139909141 139909141 T A ANKHD1 Missense_Mutation p.F2204I 0.17 possibly_damaging(0.871) TCGA-NH-A8F8-01 5 140182596 140182596 C T PCDHA3 Missense_Mutation p.A605V 0.29 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-NH-A8F8-01 5 140232564 140232564 C T PCDHA9 Intron 0.36 TCGA-NH-A8F8-01 5 140589584 140589584 A G PCDHB12 Missense_Mutation p.R369G 0.33 tolerated_low_confidence(0.1) benign(0.012) TCGA-NH-A8F8-01 5 176831535 176831535 C G F12 Silent p.A255A 0.05 TCGA-NH-A8F8-01 5 1878514 1878514 C T IRX4 Missense_Mutation p.A377T 0.07 tolerated(0.23) possibly_damaging(0.891) TCGA-NH-A8F8-01 5 36680579 36680579 G A SLC1A3 Missense_Mutation p.V393I 0.32 tolerated(0.14) probably_damaging(0.985) TCGA-NH-A8F8-01 6 100841572 100841572 G A SIM1 Missense_Mutation p.S454L 0.38 tolerated_low_confidence(0.23) benign(0.025) TCGA-NH-A8F8-01 6 110301201 110301201 G A GPR6 Missense_Mutation p.A296T 0.42 tolerated(0.45) probably_damaging(0.995) TCGA-NH-A8F8-01 6 117127570 117127570 C T GPRC6A Missense_Mutation p.R433H 0.20 deleterious(0.01) benign(0.223) TCGA-NH-A8F8-01 6 121769798 121769798 C T GJA1 3'UTR 0.39 TCGA-NH-A8F8-01 6 129635935 129635935 C T LAMA2 Missense_Mutation p.R1183W 0.34 deleterious(0) possibly_damaging(0.816) TCGA-NH-A8F8-01 6 135507159 135507159 G T MYB Splice_Site p.X47_splice 0.11 TCGA-NH-A8F8-01 6 150157389 150157389 C A LRP11 Missense_Mutation p.A362S 0.46 tolerated(0.47) benign(0.437) TCGA-NH-A8F8-01 6 31854778 31854778 C T EHMT2 Silent p.L704L 0.29 TCGA-NH-A8F8-01 6 31901972 31901972 C T C2 Missense_Mutation p.R249C 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-NH-A8F8-01 7 100274972 100274972 C T GNB2 Intron 0.35 TCGA-NH-A8F8-01 7 100281208 100281208 C T GIGYF1 Missense_Mutation p.G673S 0.44 deleterious(0.01) unknown(0) TCGA-NH-A8F8-01 7 44556890 44556890 G T NPC1L1 Missense_Mutation p.A1095E 0.23 tolerated(0.23) benign(0.213) TCGA-NH-A8F8-01 7 57509990 57509990 G T ZNF716 5'UTR 0.36 TCGA-NH-A8F8-01 7 71177207 71177207 G A WBSCR17 3'UTR 0.17 TCGA-NH-A8F8-01 7 99757744 99757744 C A GAL3ST4 Missense_Mutation p.R423L 0.32 tolerated(0.16) benign(0.283) TCGA-NH-A8F8-01 7 99949991 99949991 C T PILRB 5'UTR 0.11 TCGA-NH-A8F8-01 8 120754874 120754874 A C TAF2 Silent p.A1079A 0.06 TCGA-NH-A8F8-01 8 145625815 145625815 G A CPSF1 Silent p.P253P 0.26 TCGA-NH-A8F8-01 8 28218623 28218623 G A ZNF395 Nonsense_Mutation p.R7* 0.75 TCGA-NH-A8F8-01 8 53573708 53573708 A C RB1CC1 Missense_Mutation p.L498V 0.31 deleterious(0.05) benign(0.098) TCGA-NH-A8F8-01 8 97978230 97978230 G A CPQ Missense_Mutation p.G306E 0.31 deleterious(0) probably_damaging(0.999) TCGA-NH-A8F8-01 9 114090262 114090262 G A OR2K2 Missense_Mutation p.T151M 0.55 deleterious(0.03) probably_damaging(0.994) TCGA-NH-A8F8-01 9 125424811 125424811 G T OR1L1 Missense_Mutation p.A273S 0.67 tolerated(0.05) possibly_damaging(0.491) TCGA-NH-A8F8-01 9 136405769 136405769 C T ADAMTSL2 Silent p.T154T 0.59 TCGA-NH-A8F8-01 9 34506750 34506750 T C DNAI1 Missense_Mutation p.Y397H 0.53 tolerated(0.32) benign(0.005) TCGA-NH-A8F8-01 9 90502414 90502414 G A SPATA31E1 Silent p.E1004E 0.47 TCGA-NH-A8F8-01 X 131762447 131762447 G A HS6ST2 Missense_Mutation p.P581L 0.75 deleterious_low_confidence(0.02) benign(0.003) TCGA-NH-A8F8-01 X 1501538 1501538 T A IL3RA 3'UTR 0.43 TCGA-NH-A8F8-01 X 1501539 1501539 G T IL3RA 3'UTR 0.49 TCGA-NH-A8F8-01 X 30236743 30236743 C T MAGEB2 Missense_Mutation p.R16C 0.69 tolerated(0.1) benign(0.09) TCGA-NH-A8F8-01 X 63411432 63411432 C A AMER1 Nonsense_Mutation p.E579* 0.57 TCGA-NH-A8F8-01 X 91090552 91090552 G A PCDH11X Missense_Mutation p.V17M 0.68 deleterious(0.03) possibly_damaging(0.551) TCGA-QG-A5YV-01 10 105037634 105037634 C T INA Silent p.D222D 0.21 TCGA-QG-A5YV-01 10 114900973 114900974 - T TCF7L2 Frame_Shift_Ins p.H195Lfs*15 0.09 TCGA-QG-A5YV-01 10 119307817 119307817 C A EMX2 3'UTR 0.33 TCGA-QG-A5YV-01 10 121586726 121586726 G A INPP5F Missense_Mutation p.D945N 0.44 tolerated_low_confidence(1) benign(0) TCGA-QG-A5YV-01 10 128114652 128114652 C A C10orf90 Missense_Mutation p.D657Y 0.21 deleterious(0) possibly_damaging(0.598) TCGA-QG-A5YV-01 10 13323078 13323078 G T PHYH Nonsense_Mutation p.C287* 0.12 TCGA-QG-A5YV-01 10 15726033 15726033 C T ITGA8 Missense_Mutation p.A180T 0.08 tolerated(0.57) benign(0.059) TCGA-QG-A5YV-01 10 25886831 25886831 C T GPR158 Missense_Mutation p.T759M 0.32 deleterious(0) probably_damaging(0.972) TCGA-QG-A5YV-01 10 28233762 28233762 C T ARMC4 Missense_Mutation p.D506N 0.39 tolerated(0.24) benign(0.035) TCGA-QG-A5YV-01 10 56423997 56423997 G T PCDH15 Missense_Mutation p.T9K 0.31 tolerated_low_confidence(1) benign(0) TCGA-QG-A5YV-01 10 5690969 5690969 C T ASB13 Missense_Mutation p.E161K 0.10 tolerated(0.14) benign(0.091) TCGA-QG-A5YV-01 10 8007542 8007542 T G TAF3 Missense_Mutation p.F690C 0.22 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-QG-A5YV-01 10 85984803 85984803 C T LRIT2 Missense_Mutation p.V60M 0.08 deleterious(0.01) possibly_damaging(0.707) TCGA-QG-A5YV-01 10 91163323 91163323 C A IFIT1 Silent p.R431R 0.04 TCGA-QG-A5YV-01 10 92509242 92509242 G A HTR7 Missense_Mutation p.P217S 0.34 deleterious(0.03) possibly_damaging(0.838) TCGA-QG-A5YV-01 11 10624764 10624764 C T MRVI1 Missense_Mutation p.R593Q 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-QG-A5YV-01 11 122805765 122805765 G A C11orf63 Missense_Mutation p.R539K 0.34 tolerated(1) benign(0) TCGA-QG-A5YV-01 11 123813617 123813617 A T OR6T1 Missense_Mutation p.L310H 0.35 tolerated(0.54) benign(0.145) TCGA-QG-A5YV-01 11 133714223 133714223 G A SPATA19 Missense_Mutation p.H93Y 0.31 tolerated(0.08) benign(0.031) TCGA-QG-A5YV-01 11 252556 252556 A G PSMD13 Missense_Mutation p.M365V 0.10 tolerated(0.06) benign(0.316) TCGA-QG-A5YV-01 11 28318406 28318406 G A METTL15 Missense_Mutation p.A236T 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-QG-A5YV-01 11 70332469 70332469 G A SHANK2 Missense_Mutation p.S1311L 0.28 deleterious(0) benign(0.32) TCGA-QG-A5YV-01 11 88242562 88242562 G A GRM5 Missense_Mutation p.T946M 0.04 tolerated_low_confidence(0.17) probably_damaging(0.999) TCGA-QG-A5YV-01 11 92600095 92600095 G A FAT3 Silent p.T3949T 0.28 TCGA-QG-A5YV-01 12 102036282 102036282 G A MYBPC1 Missense_Mutation p.A226T 0.04 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YV-01 12 105151290 105151290 C T CHST11 Silent p.N256N 0.35 TCGA-QG-A5YV-01 12 106995116 106995116 G A RFX4 Missense_Mutation p.R21H 0.33 tolerated_low_confidence(0.34) benign(0) TCGA-QG-A5YV-01 12 111158951 111158951 T G PPP1CC Missense_Mutation p.K301T 0.47 deleterious_low_confidence(0.04) benign(0.152) TCGA-QG-A5YV-01 12 125434973 125434973 C T DHX37 Missense_Mutation p.R1036Q 0.07 tolerated(0.3) benign(0.103) TCGA-QG-A5YV-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.41 deleterious(0) possibly_damaging(0.479) TCGA-QG-A5YV-01 12 43771275 43771275 G T ADAMTS20 Silent p.R1630R 0.12 TCGA-QG-A5YV-01 12 49221459 49221459 G A CACNB3 Missense_Mutation p.R411H 0.37 tolerated_low_confidence(0.12) benign(0.001) TCGA-QG-A5YV-01 12 50749984 50749984 G A FAM186A Nonsense_Mutation p.R211* 0.32 TCGA-QG-A5YV-01 12 56088562 56088562 C T ITGA7 Silent p.A736A 0.12 TCGA-QG-A5YV-01 12 67699574 67699574 C T CAND1 Missense_Mutation p.S709L 0.31 tolerated(0.06) benign(0.293) TCGA-QG-A5YV-01 12 8329742 8329742 C A ZNF705A Missense_Mutation p.L156I 0.07 tolerated(0.39) benign(0.002) TCGA-QG-A5YV-01 12 8688742 8688742 C G CLEC4E Missense_Mutation p.Q144H 0.37 deleterious(0.03) possibly_damaging(0.894) TCGA-QG-A5YV-01 12 94603434 94603435 - A PLXNC1 Frame_Shift_Ins p.C506Vfs*3 0.12 TCGA-QG-A5YV-01 13 113980267 113980267 G A GRTP1 Silent p.F234F 0.46 TCGA-QG-A5YV-01 13 27250750 27250750 G A WASF3 Missense_Mutation p.R202H 0.51 deleterious(0) possibly_damaging(0.901) TCGA-QG-A5YV-01 13 37007278 37007278 C A CCNA1 Missense_Mutation p.P73T 0.06 tolerated(0.35) benign(0.048) TCGA-QG-A5YV-01 13 39451316 39451316 G C FREM2 Missense_Mutation p.K2869N 0.07 deleterious(0) possibly_damaging(0.598) TCGA-QG-A5YV-01 14 105180934 105180934 C T INF2 Silent p.A1145A 0.41 TCGA-QG-A5YV-01 14 105417933 105417933 G A AHNAK2 Silent p.H1285H 0.76 TCGA-QG-A5YV-01 14 20404502 20404502 G A OR4K1 Missense_Mutation p.R226Q 0.34 tolerated(0.41) benign(0.005) TCGA-QG-A5YV-01 14 21966380 21966380 T A METTL3 3'UTR 0.26 TCGA-QG-A5YV-01 14 24529434 24529434 G T LRRC16B Missense_Mutation p.Q677H 0.41 tolerated(0.44) benign(0.014) TCGA-QG-A5YV-01 14 24532044 24532044 G T LRRC16B Missense_Mutation p.G899W 0.45 tolerated(0.11) probably_damaging(0.956) TCGA-QG-A5YV-01 14 31613371 31613371 T C HECTD1 Silent p.P908P 0.38 TCGA-QG-A5YV-01 14 65270474 65270474 G A SPTB Missense_Mutation p.R109C 0.47 deleterious(0) probably_damaging(1) TCGA-QG-A5YV-01 14 74205637 74205637 C T ELMSAN1 Missense_Mutation p.A359T 0.47 tolerated(0.31) benign(0.003) TCGA-QG-A5YV-01 14 94401126 94401126 G A ASB2 Missense_Mutation p.P595L 0.41 deleterious(0) probably_damaging(0.911) TCGA-QG-A5YV-01 14 94770836 94770836 G A SERPINA6 Silent p.F379F 0.40 TCGA-QG-A5YV-01 15 62238607 62238607 T C VPS13C Missense_Mutation p.M1627V 0.34 deleterious(0.02) benign(0.037) TCGA-QG-A5YV-01 15 71203885 71203885 C G LRRC49 Nonsense_Mutation p.S177* 0.04 TCGA-QG-A5YV-01 15 75942270 75942270 G A SNX33 Missense_Mutation p.R276H 0.04 deleterious(0) probably_damaging(0.998) TCGA-QG-A5YV-01 15 83395108 83395108 C T AC105339.2 3'Flank 0.48 TCGA-QG-A5YV-01 15 83532931 83532931 A G HOMER2 Silent p.S125S 0.52 TCGA-QG-A5YV-01 15 84639305 84639305 C T ADAMTSL3 Missense_Mutation p.R854W 0.31 deleterious(0.02) possibly_damaging(0.846) TCGA-QG-A5YV-01 15 92671645 92671645 G T SLCO3A1 Missense_Mutation p.D480Y 0.08 tolerated(0.11) probably_damaging(0.929) TCGA-QG-A5YV-01 16 20548586 20548586 C T ACSM2B Silent p.A576A 0.34 TCGA-QG-A5YV-01 16 20809816 20809816 T C ERI2 Missense_Mutation p.I436V 0.50 tolerated(0.3) benign(0.004) TCGA-QG-A5YV-01 16 23692295 23692295 G T PLK1 Missense_Mutation p.G213V 0.08 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YV-01 16 57449095 57449095 C - CCL17 Frame_Shift_Del p.R59Gfs*7 0.11 TCGA-QG-A5YV-01 16 68011710 68011710 C T DPEP3 Missense_Mutation p.R285H 0.40 deleterious(0.01) possibly_damaging(0.448) TCGA-QG-A5YV-01 16 70211337 70211337 C T CLEC18C Missense_Mutation p.A137V 0.05 tolerated(0.25) benign(0.022) TCGA-QG-A5YV-01 16 77228826 77228826 G A MON1B Missense_Mutation p.R357H 0.07 deleterious(0.01) possibly_damaging(0.717) TCGA-QG-A5YV-01 17 33521152 33521152 G A SLC35G3 Missense_Mutation p.R59C 0.08 deleterious(0.04) benign(0.147) TCGA-QG-A5YV-01 17 37882003 37882003 C T ERBB2 Silent p.Y923Y 0.21 TCGA-QG-A5YV-01 17 4689282 4689282 C T VMO1 Silent p.A87A 0.57 TCGA-QG-A5YV-01 17 61767704 61767704 G A MAP3K3 Missense_Mutation p.V413M 0.56 deleterious(0.02) benign(0.206) TCGA-QG-A5YV-01 17 70119694 70119694 G - SOX9 Frame_Shift_Del p.G233Afs*20 0.26 TCGA-QG-A5YV-01 17 71281648 71281648 G A CDC42EP4 Missense_Mutation p.A331V 0.34 tolerated(0.16) benign(0.027) TCGA-QG-A5YV-01 17 73836863 73836863 C T UNC13D Silent p.T221T 0.39 TCGA-QG-A5YV-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.63 tolerated(0.11) benign(0.308) TCGA-QG-A5YV-01 18 44555154 44555154 C T TCEB3C Missense_Mutation p.D354N 0.05 deleterious(0) possibly_damaging(0.736) TCGA-QG-A5YV-01 18 61471669 61471669 C T SERPINB7 Missense_Mutation p.R315C 0.58 deleterious(0.02) probably_damaging(0.992) TCGA-QG-A5YV-01 18 77097332 77097332 C T ATP9B Silent p.A722A 0.41 TCGA-QG-A5YV-01 19 14568891 14568891 C T PKN1 Missense_Mutation p.T411M 0.37 deleterious(0) probably_damaging(0.997) TCGA-QG-A5YV-01 19 1585079 1585079 C T MBD3 Missense_Mutation p.R82H 0.39 tolerated(0.1) probably_damaging(0.951) TCGA-QG-A5YV-01 19 36223878 36223878 C A KMT2B Missense_Mutation p.A2143D 0.41 probably_damaging(0.981) TCGA-QG-A5YV-01 19 3918818 3918818 C T ATCAY Missense_Mutation p.P339L 0.27 deleterious_low_confidence(0.02) benign(0.002) TCGA-QG-A5YV-01 19 39516071 39516071 C T FBXO27 Missense_Mutation p.V278M 0.34 deleterious(0.01) possibly_damaging(0.781) TCGA-QG-A5YV-01 19 46029478 46029478 G T VASP 3'UTR 0.32 TCGA-QG-A5YV-01 19 51561890 51561890 G A KLK13 Missense_Mutation p.R184C 0.41 tolerated(0.19) probably_damaging(0.956) TCGA-QG-A5YV-01 19 54778519 54778519 G T LILRB2 3'UTR 0.06 TCGA-QG-A5YV-01 19 55559706 55559706 G T RDH13 Silent p.R217R 0.47 TCGA-QG-A5YV-01 19 59010002 59010002 C T SLC27A5 Silent p.E651E 0.42 TCGA-QG-A5YV-01 19 619034 619034 G C POLRMT Missense_Mutation p.P1077R 0.06 deleterious(0) probably_damaging(1) TCGA-QG-A5YV-01 19 621206 621206 C T POLRMT Missense_Mutation p.R831H 0.45 deleterious(0) probably_damaging(0.982) TCGA-QG-A5YV-01 19 8175750 8175750 G A FBN3 Nonsense_Mutation p.R1438* 0.35 TCGA-QG-A5YV-01 1 113245705 113245705 C A RHOC Missense_Mutation p.D65Y 0.28 deleterious(0) probably_damaging(0.986) TCGA-QG-A5YV-01 1 11718421 11718421 G A FBXO44 Silent p.Q121Q 0.11 TCGA-QG-A5YV-01 1 11844410 11844410 G A C1orf167 Missense_Mutation p.R1086H 0.18 tolerated(0.3) benign(0.004) TCGA-QG-A5YV-01 1 152281164 152281164 C T FLG Silent p.G2066G 0.03 TCGA-QG-A5YV-01 1 152759760 152759760 A T LCE1E 5'UTR 0.19 TCGA-QG-A5YV-01 1 15361332 15361332 G A KAZN Missense_Mutation p.R169H 0.27 deleterious(0) possibly_damaging(0.811) TCGA-QG-A5YV-01 1 154228177 154228177 G A UBAP2L Silent p.Q701Q 0.50 TCGA-QG-A5YV-01 1 155292164 155292164 C T RUSC1 Silent p.D200D 0.16 TCGA-QG-A5YV-01 1 158549133 158549133 C A OR10X1 Missense_Mutation p.R186I 0.06 tolerated(0.1) benign(0.004) TCGA-QG-A5YV-01 1 16073495 16073495 C T TMEM82 Silent p.G297G 0.47 TCGA-QG-A5YV-01 1 161496265 161496265 G A HSPA6 Missense_Mutation p.R606H 0.10 tolerated_low_confidence(0.06) benign(0.003) TCGA-QG-A5YV-01 1 179057180 179057180 G A TOR3A Silent p.E258E 0.14 TCGA-QG-A5YV-01 1 18960958 18960958 G A PAX7 Missense_Mutation p.V83I 0.08 deleterious(0.01) possibly_damaging(0.735) TCGA-QG-A5YV-01 1 19609318 19609318 C T AKR7A3 Silent p.A301A 0.38 TCGA-QG-A5YV-01 1 200968486 200968486 C T KIF21B Missense_Mutation p.E626K 0.58 tolerated(0.1) probably_damaging(0.955) TCGA-QG-A5YV-01 1 201860964 201860964 C T SHISA4 Missense_Mutation p.P195L 0.16 deleterious(0.01) unknown(0) TCGA-QG-A5YV-01 1 211192226 211192226 C T KCNH1 Missense_Mutation p.A311T 0.69 tolerated(0.09) probably_damaging(0.985) TCGA-QG-A5YV-01 1 220754461 220754461 G T MARK1 Splice_Site p.X103_splice 0.07 TCGA-QG-A5YV-01 1 228481911 228481911 G A OBSCN Silent p.T4159T 0.07 TCGA-QG-A5YV-01 1 228491542 228491542 G T OBSCN Missense_Mutation p.R4635S 0.06 benign(0.145) TCGA-QG-A5YV-01 1 242383404 242383404 C T PLD5 Silent p.T207T 0.59 TCGA-QG-A5YV-01 1 247875338 247875338 C T OR6F1 Silent p.T240T 0.10 TCGA-QG-A5YV-01 1 248436559 248436559 A G OR2T33 Silent p.A186A 0.16 TCGA-QG-A5YV-01 1 35227930 35227930 T A GJB4 3'UTR 0.07 TCGA-QG-A5YV-01 1 41303357 41303357 G A KCNQ4 Missense_Mutation p.R589Q 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-QG-A5YV-01 1 6530577 6530577 C T PLEKHG5 Missense_Mutation p.E636K 0.08 deleterious(0.01) probably_damaging(0.956) TCGA-QG-A5YV-01 1 86173766 86173766 G A ZNHIT6 Missense_Mutation p.P68S 0.12 tolerated_low_confidence(0.08) benign(0.001) TCGA-QG-A5YV-01 1 86822126 86822126 C A ODF2L Splice_Site p.X506_splice 0.50 TCGA-QG-A5YV-01 20 31652627 31652627 C T BPIFB3 Silent p.L300L 0.22 TCGA-QG-A5YV-01 20 36850945 36850945 C A KIAA1755 Missense_Mutation p.D775Y 0.61 deleterious(0) probably_damaging(0.99) TCGA-QG-A5YV-01 21 11038739 11038739 G A BAGE2 RNA 0.27 TCGA-QG-A5YV-01 21 34127586 34127586 G A PAXBP1 Nonsense_Mutation p.Q488* 0.10 TCGA-QG-A5YV-01 21 34443986 34443986 G A OLIG1 3'UTR 0.15 TCGA-QG-A5YV-01 21 45845643 45845643 G A TRPM2 Missense_Mutation p.R1243Q 0.14 deleterious(0) possibly_damaging(0.631) TCGA-QG-A5YV-01 21 46078062 46078062 G A KRTAP12-3 Missense_Mutation p.V56M 0.69 tolerated(0.07) benign(0.004) TCGA-QG-A5YV-01 21 46925156 46925156 C T COL18A1 Missense_Mutation p.P1173S 0.33 probably_damaging(0.999) TCGA-QG-A5YV-01 21 47918719 47918719 G A DIP2A Missense_Mutation p.A210T 0.57 tolerated(0.12) benign(0.006) TCGA-QG-A5YV-01 22 17589466 17589466 G A IL17RA Missense_Mutation p.A453T 0.27 deleterious(0.02) possibly_damaging(0.894) TCGA-QG-A5YV-01 22 18900843 18900843 G A PRODH Missense_Mutation p.P550S 0.20 deleterious(0) probably_damaging(1) TCGA-QG-A5YV-01 22 20458324 20458324 C T RIMBP3 Missense_Mutation p.R993H 0.17 tolerated(0.6) benign(0.002) TCGA-QG-A5YV-01 22 31722832 31722832 C T PATZ1 3'UTR 0.26 TCGA-QG-A5YV-01 22 38369768 38369768 C T SOX10 Missense_Mutation p.A379T 0.40 tolerated(0.75) benign(0.002) TCGA-QG-A5YV-01 22 38902204 38902204 C T DDX17 Silent p.L13L 0.11 TCGA-QG-A5YV-01 22 39884148 39884148 C T MGAT3 Missense_Mutation p.R266C 0.23 deleterious(0) possibly_damaging(0.892) TCGA-QG-A5YV-01 22 47189635 47189635 G A TBC1D22A Silent p.G119G 0.11 TCGA-QG-A5YV-01 2 132021548 132021548 G A POTEE Silent p.P840P 0.06 TCGA-QG-A5YV-01 2 134060646 134060646 G C NCKAP5 Missense_Mutation p.L36V 0.14 tolerated(0.12) probably_damaging(0.996) TCGA-QG-A5YV-01 2 139326697 139326697 A T SPOPL 3'UTR 0.08 TCGA-QG-A5YV-01 2 1652166 1652166 C T PXDN Missense_Mutation p.R1129H 0.18 deleterious(0) probably_damaging(0.99) TCGA-QG-A5YV-01 2 166900380 166900380 G A SCN1A Silent p.H614H 0.17 TCGA-QG-A5YV-01 2 182850726 182850726 C T PPP1R1C 5'UTR 0.33 TCGA-QG-A5YV-01 2 183129067 183129067 G A PDE1A Missense_Mutation p.A59V 0.27 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YV-01 2 210707114 210707114 C T UNC80 Missense_Mutation p.P1135L 0.36 benign(0.373) TCGA-QG-A5YV-01 2 219746963 219746963 C G WNT10A Missense_Mutation p.P65R 0.39 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YV-01 2 225379426 225379426 G C CUL3 Missense_Mutation p.R148G 0.41 deleterious(0.03) probably_damaging(0.977) TCGA-QG-A5YV-01 2 237028942 237028942 G A AGAP1 Missense_Mutation p.A741T 0.41 tolerated(0.54) benign(0.101) TCGA-QG-A5YV-01 2 242815361 242815361 G T CXXC11 Missense_Mutation p.V552L 0.52 deleterious(0.03) benign(0.096) TCGA-QG-A5YV-01 2 27169933 27169933 C T DPYSL5 3'UTR 0.09 TCGA-QG-A5YV-01 2 39552898 39552898 T C MAP4K3 Silent p.K260K 0.11 TCGA-QG-A5YV-01 2 43965538 43965538 C G PLEKHH2 Missense_Mutation p.S1001C 0.12 deleterious(0) probably_damaging(0.984) TCGA-QG-A5YV-01 2 5833163 5833163 C T SOX11 Missense_Mutation p.R104W 0.11 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YV-01 2 91843415 91843415 C T AC027612.6 RNA 0.29 TCGA-QG-A5YV-01 2 97483140 97483140 T G CNNM3 Missense_Mutation p.C376G 0.07 deleterious(0.01) possibly_damaging(0.497) TCGA-QG-A5YV-01 3 10360888 10360888 G A SEC13 Intron 0.46 TCGA-QG-A5YV-01 3 108474655 108474655 C G RETNLB Missense_Mutation p.W102C 0.10 deleterious(0) probably_damaging(1) TCGA-QG-A5YV-01 3 13663411 13663411 C T FBLN2 Silent p.C764C 0.55 TCGA-QG-A5YV-01 3 14559361 14559361 C T GRIP2 RNA 0.47 TCGA-QG-A5YV-01 3 178952074 178952074 G T PIK3CA Missense_Mutation p.M1043I 0.45 tolerated(0.11) benign(0.054) TCGA-QG-A5YV-01 3 20142837 20142837 C A KAT2B Missense_Mutation p.T243K 0.24 deleterious(0.03) possibly_damaging(0.612) TCGA-QG-A5YV-01 3 52555907 52555907 C T STAB1 Missense_Mutation p.R2071C 0.09 deleterious(0) probably_damaging(0.985) TCGA-QG-A5YV-01 4 108999408 108999408 T C LEF1 Missense_Mutation p.S326G 0.12 deleterious(0) probably_damaging(0.997) TCGA-QG-A5YV-01 4 147561291 147561291 G A POU4F2 Silent p.A187A 0.53 TCGA-QG-A5YV-01 4 15589482 15589482 T C CC2D2A Missense_Mutation p.V1370A 0.45 deleterious(0) possibly_damaging(0.661) TCGA-QG-A5YV-01 4 176556087 176556087 C T GPM6A Missense_Mutation p.R269H 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-QG-A5YV-01 4 26483566 26483566 C A CCKAR Missense_Mutation p.M327I 0.05 deleterious(0.04) possibly_damaging(0.515) TCGA-QG-A5YV-01 4 27024243 27024243 G A STIM2 Silent p.P630P 0.08 TCGA-QG-A5YV-01 4 40127762 40127762 T G N4BP2 Missense_Mutation p.L1447V 0.04 tolerated(0.6) benign(0.025) TCGA-QG-A5YV-01 4 41496590 41496590 G A LIMCH1 Missense_Mutation p.R45Q 0.50 deleterious(0) probably_damaging(0.996) TCGA-QG-A5YV-01 4 42400130 42400130 G - SHISA3 Frame_Shift_Del p.G20Afs*96 0.08 TCGA-QG-A5YV-01 4 42895288 42895288 T C GRXCR1 Missense_Mutation p.L2P 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.521) TCGA-QG-A5YV-01 4 56458333 56458333 C T PDCL2 5'UTR 0.16 TCGA-QG-A5YV-01 5 11199660 11199660 G A CTNND2 Silent p.N625N 0.15 TCGA-QG-A5YV-01 5 112174905 112174905 G - APC Frame_Shift_Del p.S1205Tfs*60 0.29 TCGA-QG-A5YV-01 5 112403800 112403800 G A MCC Missense_Mutation p.A669V 0.24 tolerated(0.14) benign(0.017) TCGA-QG-A5YV-01 5 132056318 132056318 G A KIF3A Missense_Mutation p.T200M 0.39 tolerated(0.06) benign(0.338) TCGA-QG-A5YV-01 5 140167148 140167148 G A PCDHA1 Missense_Mutation p.V425M 0.05 deleterious_low_confidence(0.03) probably_damaging(0.969) TCGA-QG-A5YV-01 5 140181211 140181211 C T PCDHA3 Silent p.S143S 0.29 TCGA-QG-A5YV-01 5 140182605 140182605 C T PCDHA3 Missense_Mutation p.S608L 0.38 tolerated_low_confidence(0.05) benign(0.358) TCGA-QG-A5YV-01 5 140764596 140764596 A T PCDHGA7 Silent p.V710V 0.12 TCGA-QG-A5YV-01 5 140953409 140953409 G A DIAPH1 Missense_Mutation p.P670S 0.15 unknown(0) TCGA-QG-A5YV-01 5 168187868 168187868 T A SLIT3 Missense_Mutation p.I562L 0.24 tolerated(0.42) probably_damaging(0.926) TCGA-QG-A5YV-01 5 177633780 177633781 - A HNRNPAB Frame_Shift_Ins p.A145Gfs*20 0.17 TCGA-QG-A5YV-01 5 65319128 65319128 T G ERBB2IP Missense_Mutation p.L203R 0.30 deleterious(0) probably_damaging(1) TCGA-QG-A5YV-01 6 131973997 131973997 T C ENPP3 Missense_Mutation p.C144R 0.58 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YV-01 6 144508401 144508401 G A STX11 Missense_Mutation p.E213K 0.08 deleterious(0) probably_damaging(0.996) TCGA-QG-A5YV-01 6 146275952 146275952 A G SHPRH Silent p.S169S 0.11 TCGA-QG-A5YV-01 6 149720241 149720241 A G TAB2 Silent p.G620G 0.20 TCGA-QG-A5YV-01 6 160482564 160482564 G A IGF2R Missense_Mutation p.G1098S 0.12 tolerated(0.28) benign(0.222) TCGA-QG-A5YV-01 6 161469987 161469987 C G MAP3K4 Missense_Mutation p.T228S 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-QG-A5YV-01 6 27834828 27834828 C T HIST1H1B Silent p.K160K 0.23 TCGA-QG-A5YV-01 6 27879313 27879313 G A OR2B2 Missense_Mutation p.P262L 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-QG-A5YV-01 6 31938527 31938527 C T DXO Missense_Mutation p.R223H 0.07 deleterious(0) benign(0.019) TCGA-QG-A5YV-01 6 32063550 32063550 G T TNXB Missense_Mutation p.P694T 0.31 possibly_damaging(0.482) TCGA-QG-A5YV-01 6 33271965 33271965 C T TAPBP Missense_Mutation p.V414I 0.32 tolerated(0.83) benign(0.02) TCGA-QG-A5YV-01 6 36464502 36464502 A C STK38 Missense_Mutation p.I418S 0.39 tolerated(0.86) benign(0.038) TCGA-QG-A5YV-01 6 42690067 42690067 C T PRPH2 Silent p.A2A 0.06 TCGA-QG-A5YV-01 6 43221331 43221331 G A TTBK1 Missense_Mutation p.R119H 0.45 probably_damaging(1) TCGA-QG-A5YV-01 6 54805546 54805546 A - FAM83B Frame_Shift_Del p.K593Nfs*30 0.26 TCGA-QG-A5YV-01 7 138269655 138269655 A G TRIM24 Missense_Mutation p.K1038E 0.07 deleterious(0) possibly_damaging(0.628) TCGA-QG-A5YV-01 7 23213659 23213659 C T KLHL7 Silent p.Y501Y 0.04 TCGA-QG-A5YV-01 7 4119123 4119123 C A SDK1 Silent p.V1077V 0.09 TCGA-QG-A5YV-01 7 4874840 4874840 G A RADIL Missense_Mutation p.R272W 0.08 deleterious(0) possibly_damaging(0.696) TCGA-QG-A5YV-01 7 56183936 56183936 G A NUPR1L Silent p.Y24Y 0.11 TCGA-QG-A5YV-01 7 77261724 77261724 G T PTPN12 Missense_Mutation p.V686L 0.07 tolerated(0.15) benign(0.006) TCGA-QG-A5YV-01 7 92940555 92940555 A G CCDC132 Missense_Mutation p.N609S 0.34 deleterious(0) possibly_damaging(0.504) TCGA-QG-A5YV-01 8 15605974 15605974 G T TUSC3 Missense_Mutation p.S343I 0.27 deleterious(0) possibly_damaging(0.62) TCGA-QG-A5YV-01 8 39694686 39694686 C T ADAM2 Missense_Mutation p.R34Q 0.36 tolerated(0.59) benign(0.019) TCGA-QG-A5YV-01 8 52321991 52321991 G T PXDNL Missense_Mutation p.D731E 0.15 deleterious(0.03) probably_damaging(0.994) TCGA-QG-A5YV-01 8 59059662 59059662 G T FAM110B Silent p.L291L 0.21 TCGA-QG-A5YV-01 8 69351667 69351667 A C C8orf34 Intron 0.38 TCGA-QG-A5YV-01 9 101980623 101980623 G C ALG2 Missense_Mutation p.Q282E 0.08 tolerated(1) benign(0.001) TCGA-QG-A5YV-01 9 117846706 117846706 G A TNC Missense_Mutation p.T638M 0.13 deleterious(0) probably_damaging(0.998) TCGA-QG-A5YV-01 9 127549371 127549371 C T OLFML2A Missense_Mutation p.R70C 0.29 deleterious(0) probably_damaging(0.976) TCGA-QG-A5YV-01 9 130630759 130630759 G A AK1 Silent p.D119D 0.06 TCGA-QG-A5YV-01 9 20363408 20363408 C A MLLT3 Intron 0.58 TCGA-QG-A5YV-01 9 2718355 2718355 C T KCNV2 Missense_Mutation p.R206W 0.34 deleterious(0) probably_damaging(0.987) TCGA-QG-A5YV-01 9 75420330 75420330 G C TMC1 Silent p.L533L 0.35 TCGA-QG-A5YV-01 9 86276346 86276346 C A UBQLN1 3'UTR 0.27 TCGA-QG-A5YV-01 X 105883846 105883846 G A CXorf57 Missense_Mutation p.R600Q 0.46 tolerated(0.4) benign(0.003) TCGA-QG-A5YV-01 X 110653323 110653323 G A DCX Missense_Mutation p.R183C 0.07 deleterious(0) probably_damaging(1) TCGA-QG-A5YV-01 X 114425043 114425043 G A RBMXL3 Missense_Mutation p.E347K 0.08 deleterious_low_confidence(0.01) benign(0.355) TCGA-QG-A5YV-01 X 117742062 117742062 C T DOCK11 Silent p.C903C 0.23 TCGA-QG-A5YV-01 X 119512610 119512610 C A ATP1B4 Nonsense_Mutation p.Y298* 0.35 TCGA-QG-A5YV-01 X 134993456 134993456 G A SAGE1 Missense_Mutation p.G704E 0.04 tolerated(0.1) probably_damaging(0.936) TCGA-QG-A5YV-01 X 135443747 135443747 G C GPR112 Splice_Site p.X2426_splice 0.38 TCGA-QG-A5YV-01 X 140996328 140996328 A C MAGEC1 Missense_Mutation p.K1046N 0.42 deleterious(0.01) unknown(0) TCGA-QG-A5YV-01 X 141290620 141290620 T C MAGEC2 3'UTR 0.32 TCGA-QG-A5YV-01 X 151935377 151935377 T G MAGEA3 Missense_Mutation p.S264R 0.37 deleterious(0) probably_damaging(0.972) TCGA-QG-A5YV-01 X 57621250 57621251 - C ZXDB 3'UTR 0.28 TCGA-QG-A5YV-01 X 62944543 62944543 C T ARHGEF9 Missense_Mutation p.V20I 0.41 tolerated(0.06) probably_damaging(0.924) TCGA-QG-A5YV-01 X 70321978 70321978 G A FOXO4 3'UTR 0.51 TCGA-QG-A5YV-01 X 70389148 70389148 C T NLGN3 Missense_Mutation p.T583I 0.37 deleterious(0.04) possibly_damaging(0.9) TCGA-QG-A5YV-01 X 70444228 70444228 G A GJB1 Missense_Mutation p.R224H 0.10 tolerated(0.14) benign(0) TCGA-QG-A5YV-01 X 79937513 79937513 G T BRWD3 Missense_Mutation p.S1493Y 0.12 deleterious(0.04) probably_damaging(0.991) TCGA-QG-A5YV-01 X 83403063 83403063 T - RPS6KA6 Frame_Shift_Del p.A110Pfs*3 0.22 TCGA-QG-A5YV-01 X 88009656 88009659 CTGA - CPXCR1 3'UTR 0.33 TCGA-QG-A5YV-01 X 9683038 9683038 G A TBL1X Missense_Mutation p.G568S 0.44 tolerated(0.09) benign(0.312) TCGA-QG-A5YW-01 10 129216675 129216675 C T DOCK1 Missense_Mutation p.T1500M 0.40 deleterious(0) probably_damaging(0.981) TCGA-QG-A5YW-01 10 16982062 16982062 G A CUBN Silent p.S1839S 0.28 TCGA-QG-A5YW-01 10 25464519 25464519 C G GPR158 Missense_Mutation p.S57C 0.38 deleterious(0.05) benign(0.41) TCGA-QG-A5YW-01 10 26506539 26506539 C T GAD2 Missense_Mutation p.A26V 0.18 tolerated_low_confidence(0.14) benign(0.173) TCGA-QG-A5YW-01 10 62648802 62648802 C T RHOBTB1 Silent p.L208L 0.20 TCGA-QG-A5YW-01 10 72292763 72292763 G A PALD1 Silent p.L269L 0.46 TCGA-QG-A5YW-01 10 72517996 72517996 G T ADAMTS14 Missense_Mutation p.V1048L 0.30 tolerated(1) benign(0.005) TCGA-QG-A5YW-01 10 73558927 73558927 G T CDH23 Missense_Mutation p.V132L 0.27 tolerated(0.07) possibly_damaging(0.714) TCGA-QG-A5YW-01 10 89624271 89624271 A C PTEN Missense_Mutation p.R15S 0.42 deleterious(0) possibly_damaging(0.566) TCGA-QG-A5YW-01 10 95718676 95718676 G T PIPSL RNA 0.21 TCGA-QG-A5YW-01 10 98744424 98744424 G T C10orf12 Nonsense_Mutation p.E1093* 0.22 TCGA-QG-A5YW-01 10 99337638 99337638 G A ANKRD2 Missense_Mutation p.A84T 0.50 tolerated(0.58) benign(0.021) TCGA-QG-A5YW-01 11 103093732 103093732 T A DYNC2H1 Silent p.A3090A 0.40 TCGA-QG-A5YW-01 11 117403091 117403091 C T DSCAML1 Missense_Mutation p.D280N 0.34 deleterious(0.01) possibly_damaging(0.646) TCGA-QG-A5YW-01 11 118513031 118513031 C T PHLDB1 Silent p.A932A 0.37 TCGA-QG-A5YW-01 11 121028915 121028915 C T TECTA Silent p.N1557N 0.38 TCGA-QG-A5YW-01 11 121448004 121448004 C T SORL1 Missense_Mutation p.R1159W 0.40 deleterious(0.03) probably_damaging(0.948) TCGA-QG-A5YW-01 11 125482557 125482557 C G STT3A Missense_Mutation p.S427C 0.33 deleterious(0.03) possibly_damaging(0.684) TCGA-QG-A5YW-01 11 33640140 33640140 G A KIAA1549L Missense_Mutation p.E1484K 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-QG-A5YW-01 11 46741275 46741275 C T F2 Missense_Mutation p.R35W 0.40 tolerated(0.11) benign(0.07) TCGA-QG-A5YW-01 11 55037976 55037976 G A TRIM48 3'UTR 0.23 TCGA-QG-A5YW-01 11 65547447 65547447 G A AP5B1 Missense_Mutation p.R173W 0.40 deleterious(0.01) probably_damaging(0.978) TCGA-QG-A5YW-01 11 66030291 66030291 G T KLC2 Missense_Mutation p.S179I 0.19 tolerated(0.14) benign(0.068) TCGA-QG-A5YW-01 11 6817055 6817055 G T OR6A2 5'UTR 0.16 TCGA-QG-A5YW-01 12 109281295 109281295 C T DAO Silent p.G88G 0.19 TCGA-QG-A5YW-01 12 114793473 114793473 G C TBX5 Missense_Mutation p.T474S 0.56 tolerated(0.53) benign(0.002) TCGA-QG-A5YW-01 12 122255711 122255711 G A SETD1B Missense_Mutation p.D1064N 0.51 unknown(0) TCGA-QG-A5YW-01 12 5154292 5154292 G A KCNA5 Missense_Mutation p.V327M 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-QG-A5YW-01 12 57569758 57569758 G A LRP1 Missense_Mutation p.G1287E 0.13 probably_damaging(0.949) TCGA-QG-A5YW-01 12 57590839 57590839 C T LRP1 Silent p.T2989T 0.17 TCGA-QG-A5YW-01 12 6701583 6701583 C T CHD4 Missense_Mutation p.R975H 0.23 deleterious(0) probably_damaging(0.954) TCGA-QG-A5YW-01 12 9220472 9220472 T C A2M Intron 0.26 TCGA-QG-A5YW-01 13 19752393 19752393 C T TUBA3C Missense_Mutation p.R123H 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.545) TCGA-QG-A5YW-01 13 41400649 41400649 A C TPTE2P5 RNA 0.36 TCGA-QG-A5YW-01 13 45767796 45767796 A G KCTD4 3'UTR 0.47 TCGA-QG-A5YW-01 13 51825990 51825990 C T FAM124A Missense_Mutation p.R199W 0.47 deleterious(0) probably_damaging(1) TCGA-QG-A5YW-01 14 23567663 23567663 A C C14orf119 3'UTR 0.34 TCGA-QG-A5YW-01 14 77904183 77904183 G C VIPAS39 Missense_Mutation p.D268E 0.40 tolerated(1) benign(0.001) TCGA-QG-A5YW-01 15 45007900 45007900 G C B2M Splice_Site p.X116_splice 0.63 TCGA-QG-A5YW-01 15 45427438 45427438 A G DUOX1 Silent p.R148R 0.08 TCGA-QG-A5YW-01 15 58247320 58247320 T G ALDH1A2 3'UTR 0.27 TCGA-QG-A5YW-01 15 64056378 64056378 C A HERC1 Missense_Mutation p.D315Y 0.80 benign(0.286) TCGA-QG-A5YW-01 15 83430996 83430996 G A FSD2 Nonsense_Mutation p.R619* 0.07 TCGA-QG-A5YW-01 16 2201694 2201694 A T RAB26 Splice_Site p.X117_splice 0.44 TCGA-QG-A5YW-01 16 4029254 4029254 C T ADCY9 Missense_Mutation p.V848I 0.40 deleterious(0.03) benign(0.04) TCGA-QG-A5YW-01 16 72153334 72153334 C G PMFBP1 Intron 0.05 TCGA-QG-A5YW-01 16 89806371 89806371 C T ZNF276 3'Flank 0.42 TCGA-QG-A5YW-01 17 17698812 17698812 C T RAI1 Silent p.F850F 0.64 TCGA-QG-A5YW-01 17 39551841 39551841 C T KRT31 Missense_Mutation p.R208H 0.62 deleterious(0.03) benign(0.103) TCGA-QG-A5YW-01 17 48268813 48268813 G A COL1A1 Silent p.G722G 0.15 TCGA-QG-A5YW-01 17 59984843 59984843 C T INTS2 Silent p.L377L 0.80 TCGA-QG-A5YW-01 17 62547735 62547735 A C SMURF2 Missense_Mutation p.H612Q 0.15 tolerated(0.27) benign(0.177) TCGA-QG-A5YW-01 17 73805945 73805945 G A UNK Missense_Mutation p.R70Q 0.86 deleterious(0) probably_damaging(0.99) TCGA-QG-A5YW-01 17 7574034 7574034 C T TP53 Splice_Site p.X332_splice 0.62 TCGA-QG-A5YW-01 17 76486850 76486850 G A DNAH17 Missense_Mutation p.T2236M 0.16 possibly_damaging(0.473) TCGA-QG-A5YW-01 17 79556018 79556018 G A NPLOC4 Silent p.Y411Y 0.54 TCGA-QG-A5YW-01 18 10696407 10696407 C T PIEZO2 Missense_Mutation p.G2207S 0.21 deleterious(0) possibly_damaging(0.809) TCGA-QG-A5YW-01 18 21511036 21511036 T C LAMA3 Missense_Mutation p.L2816P 0.26 probably_damaging(0.988) TCGA-QG-A5YW-01 18 2946541 2946541 T C LPIN2 Intron 0.31 TCGA-QG-A5YW-01 18 45374930 45374930 G C SMAD2 Missense_Mutation p.P305A 0.56 deleterious(0.01) possibly_damaging(0.83) TCGA-QG-A5YW-01 18 8784714 8784714 G A SOGA2 Missense_Mutation p.R535H 0.19 tolerated(0.77) benign(0.028) TCGA-QG-A5YW-01 19 1037657 1037657 A G CNN2 Missense_Mutation p.I230V 0.44 tolerated(0.09) benign(0.134) TCGA-QG-A5YW-01 19 12759175 12759175 C T MAN2B1 Silent p.S826S 0.35 TCGA-QG-A5YW-01 19 14273575 14273575 A G LPHN1 Silent p.N351N 0.08 TCGA-QG-A5YW-01 19 14574654 14574654 C T PKN1 Missense_Mutation p.R510C 0.33 deleterious(0) probably_damaging(0.987) TCGA-QG-A5YW-01 19 14876507 14876507 G A EMR2 Silent p.H248H 0.10 TCGA-QG-A5YW-01 19 35800841 35800841 C T MAG Silent p.C432C 0.46 TCGA-QG-A5YW-01 19 41381572 41381572 C G CYP2A7 3'UTR 0.50 TCGA-QG-A5YW-01 19 41594912 41594912 G A CYP2A13 Missense_Mutation p.V87I 0.35 tolerated(0.27) probably_damaging(0.999) TCGA-QG-A5YW-01 19 46190847 46190847 G A SNRPD2 Silent p.I107I 0.35 TCGA-QG-A5YW-01 19 51649248 51649248 G T SIGLEC7 Missense_Mutation p.Q299H 0.37 tolerated(0.09) benign(0.141) TCGA-QG-A5YW-01 19 5273593 5273593 G A PTPRS Missense_Mutation p.T80M 0.12 deleterious(0.01) probably_damaging(1) TCGA-QG-A5YW-01 19 54485516 54485516 A G CACNG8 Missense_Mutation p.S231G 0.35 deleterious(0.02) benign(0.096) TCGA-QG-A5YW-01 19 55285080 55285080 C A KIR2DL1 Silent p.I122I 0.26 TCGA-QG-A5YW-01 19 6828864 6828864 C T VAV1 Silent p.D406D 0.40 TCGA-QG-A5YW-01 19 9763819 9763820 TG - ZNF562 Frame_Shift_Del p.I363Tfs*12 0.26 TCGA-QG-A5YW-01 1 104160638 104160638 C A AMY2A Nonsense_Mutation p.Y77* 0.23 TCGA-QG-A5YW-01 1 116931557 116931557 C T ATP1A1 Missense_Mutation p.P224S 0.24 deleterious(0.02) probably_damaging(1) TCGA-QG-A5YW-01 1 11983157 11983157 C T KIAA2013 Missense_Mutation p.D475N 0.23 tolerated(0.09) benign(0.118) TCGA-QG-A5YW-01 1 12017933 12017933 G A PLOD1 Missense_Mutation p.R259H 0.20 tolerated(0.09) benign(0.001) TCGA-QG-A5YW-01 1 12919596 12919596 C A PRAMEF2 Missense_Mutation p.F112L 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-QG-A5YW-01 1 152080964 152080964 G A TCHH Missense_Mutation p.R1577C 0.17 unknown(0) TCGA-QG-A5YW-01 1 156641656 156641656 A G NES Missense_Mutation p.M775T 0.55 tolerated(0.52) benign(0.002) TCGA-QG-A5YW-01 1 161495318 161495318 C T HSPA6 Silent p.F290F 0.21 TCGA-QG-A5YW-01 1 179310321 179310321 G A SOAT1 Missense_Mutation p.R219H 0.19 tolerated(0.54) benign(0.005) TCGA-QG-A5YW-01 1 180155278 180155278 C T QSOX1 Silent p.R326R 0.43 TCGA-QG-A5YW-01 1 18692039 18692039 G A IGSF21 Missense_Mutation p.R288H 0.44 tolerated(0.37) benign(0.003) TCGA-QG-A5YW-01 1 201437468 201437468 C T PHLDA3 Splice_Site 0.48 TCGA-QG-A5YW-01 1 226041338 226041338 C A TMEM63A Missense_Mutation p.V597F 0.27 deleterious(0) possibly_damaging(0.529) TCGA-QG-A5YW-01 1 229738034 229738034 G - TAF5L Frame_Shift_Del p.L294Ffs*9 0.29 TCGA-QG-A5YW-01 1 236142323 236142323 G T NID1 Silent p.I1198I 0.36 TCGA-QG-A5YW-01 1 3700579 3700579 T A LRRC47 Missense_Mutation p.S431C 0.47 deleterious(0.01) possibly_damaging(0.838) TCGA-QG-A5YW-01 1 45268739 45268739 C T PLK3 Missense_Mutation p.R288W 0.45 deleterious(0) probably_damaging(0.989) TCGA-QG-A5YW-01 1 48695022 48695022 C A SLC5A9 Missense_Mutation p.A157E 0.24 deleterious(0) possibly_damaging(0.898) TCGA-QG-A5YW-01 1 53555719 53555719 C T SLC1A7 Intron 0.38 TCGA-QG-A5YW-01 1 55081762 55081762 G C FAM151A Missense_Mutation p.P116A 0.24 deleterious(0) probably_damaging(1) TCGA-QG-A5YW-01 1 82434960 82434961 - T LPHN2 Frame_Shift_Ins p.R860Pfs*6 0.14 TCGA-QG-A5YW-01 1 89849658 89849658 G T GBP6 Missense_Mutation p.R492L 0.14 deleterious(0.04) benign(0.009) TCGA-QG-A5YW-01 20 52774009 52774009 G A CYP24A1 Missense_Mutation p.A451V 0.37 deleterious(0) probably_damaging(0.952) TCGA-QG-A5YW-01 20 60905609 60905609 C T LAMA5 Missense_Mutation p.G1305D 0.35 possibly_damaging(0.84) TCGA-QG-A5YW-01 21 33068464 33068464 G A SCAF4 Nonsense_Mutation p.R344* 0.43 TCGA-QG-A5YW-01 21 45993916 45993916 G A KRTAP10-4 Missense_Mutation p.S94N 0.15 tolerated(0.05) unknown(0) TCGA-QG-A5YW-01 2 162242023 162242023 G C PSMD14 Missense_Mutation p.G171R 0.21 deleterious(0.05) benign(0.078) TCGA-QG-A5YW-01 2 166535631 166535631 G T CSRNP3 Nonsense_Mutation p.E376* 0.15 TCGA-QG-A5YW-01 2 169869927 169869927 T C ABCB11 Missense_Mutation p.I82V 0.06 tolerated(1) benign(0.006) TCGA-QG-A5YW-01 2 176948153 176948153 C T EVX2 Missense_Mutation p.V118M 0.20 deleterious(0) probably_damaging(0.952) TCGA-QG-A5YW-01 2 179444432 179444432 G T TTN Missense_Mutation p.Q22498K 0.62 TCGA-QG-A5YW-01 2 189950449 189950449 G T COL5A2 Missense_Mutation p.P247Q 0.81 possibly_damaging(0.457) TCGA-QG-A5YW-01 2 202900052 202900052 C T FZD7 Missense_Mutation p.R228C 0.75 deleterious(0.01) possibly_damaging(0.513) TCGA-QG-A5YW-01 2 210558857 210558857 C A MAP2 Missense_Mutation p.P655T 0.57 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-QG-A5YW-01 2 31414845 31414845 G C CAPN14 Missense_Mutation p.R412G 0.52 deleterious(0) probably_damaging(0.91) TCGA-QG-A5YW-01 2 36771598 36771598 G A CRIM1 Silent p.L901L 0.16 TCGA-QG-A5YW-01 2 86697324 86697324 T C KDM3A Intron 0.57 TCGA-QG-A5YW-01 2 90198933 90198933 T G IGKV1D-12 Missense_Mutation p.S32A 0.26 deleterious(0.02) benign(0.127) TCGA-QG-A5YW-01 2 96551853 96551853 T C ANKRD36C Missense_Mutation p.K63E 0.11 tolerated_low_confidence(0.13) benign(0.017) TCGA-QG-A5YW-01 3 113784142 113784142 G A QTRTD1 Missense_Mutation p.R25H 0.28 deleterious(0) probably_damaging(1) TCGA-QG-A5YW-01 3 132358483 132358483 C T ACAD11 Silent p.K185K 0.36 TCGA-QG-A5YW-01 3 1414572 1414572 A G CNTN6 Silent p.G573G 0.41 TCGA-QG-A5YW-01 3 142123914 142123914 C T XRN1 Missense_Mutation p.R573Q 0.44 tolerated(0.3) benign(0.037) TCGA-QG-A5YW-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.47 deleterious(0.02) probably_damaging(0.959) TCGA-QG-A5YW-01 3 183368367 183368367 A G KLHL24 Missense_Mutation p.K75E 0.25 tolerated(0.09) benign(0.002) TCGA-QG-A5YW-01 3 41277276 41277276 G A CTNNB1 Missense_Mutation p.R582Q 0.55 deleterious(0.02) possibly_damaging(0.75) TCGA-QG-A5YW-01 3 44968134 44968134 G A ZDHHC3 3'UTR 0.23 TCGA-QG-A5YW-01 3 49740929 49740929 G T RNF123 Missense_Mutation p.G607V 0.50 deleterious(0) probably_damaging(0.987) TCGA-QG-A5YW-01 3 49755807 49755807 C T AMIGO3 Silent p.T364T 0.43 TCGA-QG-A5YW-01 3 96706444 96706444 A G EPHA6 Missense_Mutation p.K241E 0.31 deleterious(0) probably_damaging(0.997) TCGA-QG-A5YW-01 4 141323164 141323166 AGG - CLGN In_Frame_Del p.L159del 0.30 TCGA-QG-A5YW-01 4 148407212 148407212 C A EDNRA Missense_Mutation p.L127I 0.28 tolerated(0.08) possibly_damaging(0.764) TCGA-QG-A5YW-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.35 deleterious(0) probably_damaging(1) TCGA-QG-A5YW-01 4 153268138 153268138 G A FBXW7 Nonsense_Mutation p.R224* 0.34 TCGA-QG-A5YW-01 4 176923544 176923544 C T GPM6A 5'Flank 0.29 TCGA-QG-A5YW-01 4 25678091 25678091 G A SLC34A2 Missense_Mutation p.R598H 0.28 tolerated(1) benign(0.005) TCGA-QG-A5YW-01 4 4214642 4214642 T C OTOP1 Missense_Mutation p.T165A 0.29 tolerated(0.39) benign(0.035) TCGA-QG-A5YW-01 4 42400175 42400175 G T SHISA3 Silent p.V34V 0.20 TCGA-QG-A5YW-01 4 82073168 82073168 T C PRKG2 Missense_Mutation p.Q344R 0.21 tolerated(0.16) possibly_damaging(0.851) TCGA-QG-A5YW-01 5 115814395 115814395 C G SEMA6A Missense_Mutation p.A424P 0.26 deleterious(0) possibly_damaging(0.643) TCGA-QG-A5YW-01 5 13735426 13735426 C A DNAH5 Missense_Mutation p.V3859F 0.18 benign(0.403) TCGA-QG-A5YW-01 5 137426425 137426428 CCTT - WNT8A Frame_Shift_Del p.P243Afs*6 0.39 TCGA-QG-A5YW-01 5 140482671 140482671 A G PCDHB3 3'UTR 0.47 TCGA-QG-A5YW-01 5 140536953 140536953 G C PCDHB17 Silent p.L459L 0.31 TCGA-QG-A5YW-01 5 140626491 140626491 C A PCDHB15 Missense_Mutation p.P449T 0.19 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-QG-A5YW-01 5 14399170 14399170 C A TRIO Missense_Mutation p.S1535R 0.13 possibly_damaging(0.87) TCGA-QG-A5YW-01 5 15936736 15936736 G A FBXL7 Missense_Mutation p.R306H 0.31 deleterious(0) probably_damaging(0.998) TCGA-QG-A5YW-01 5 179563528 179563528 G A RASGEF1C Intron 0.52 TCGA-QG-A5YW-01 5 31421451 31421451 G T DROSHA Missense_Mutation p.D1151E 0.19 deleterious(0) probably_damaging(1) TCGA-QG-A5YW-01 5 33643572 33643572 C T ADAMTS12 Missense_Mutation p.V495I 0.46 tolerated(0.09) benign(0.014) TCGA-QG-A5YW-01 5 37205472 37205472 T C C5orf42 Silent p.Q1078Q 0.57 TCGA-QG-A5YW-01 5 90106590 90106590 G T GPR98 Missense_Mutation p.Q5171H 0.44 benign(0.047) TCGA-QG-A5YW-01 5 9154601 9154601 T A SEMA5A Missense_Mutation p.S494C 0.23 deleterious(0.03) possibly_damaging(0.823) TCGA-QG-A5YW-01 5 93731962 93731962 T G KIAA0825 Missense_Mutation p.K1047T 0.23 deleterious(0.01) possibly_damaging(0.798) TCGA-QG-A5YW-01 6 123384921 123384921 C - CLVS2 3'UTR 0.17 TCGA-QG-A5YW-01 6 25600666 25600666 C T LRRC16A Nonsense_Mutation p.R1082* 0.18 TCGA-QG-A5YW-01 6 26546343 26546343 A C HMGN4 3'UTR 0.32 TCGA-QG-A5YW-01 6 27925718 27925718 C T OR2B6 Nonsense_Mutation p.R234* 0.37 TCGA-QG-A5YW-01 6 32135711 32135711 G C EGFL8 Missense_Mutation p.G287A 0.44 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-QG-A5YW-01 6 33154308 33154308 A T COL11A2 Intron 0.22 TCGA-QG-A5YW-01 6 43223586 43223586 G A TTBK1 Missense_Mutation p.D285N 0.38 possibly_damaging(0.85) TCGA-QG-A5YW-01 6 44253919 44253919 C T TCTE1 Missense_Mutation p.D210N 0.37 deleterious(0.03) benign(0.054) TCGA-QG-A5YW-01 6 84936074 84936074 A C KIAA1009 Missense_Mutation p.F13C 0.26 deleterious(0) probably_damaging(0.973) TCGA-QG-A5YW-01 6 96656245 96656245 C A FUT9 3'UTR 0.44 TCGA-QG-A5YW-01 7 112099046 112099046 G T IFRD1 Silent p.G180G 0.30 TCGA-QG-A5YW-01 7 123257709 123257709 G A ASB15 Silent p.L123L 0.22 TCGA-QG-A5YW-01 7 134617839 134617839 C T CALD1 Missense_Mutation p.R107C 0.25 deleterious(0) unknown(0) TCGA-QG-A5YW-01 7 150028435 150028435 G A ZBED6CL 3'UTR 0.30 TCGA-QG-A5YW-01 7 152497714 152497714 A G ACTR3B Missense_Mutation p.I67V 0.19 tolerated(0.25) benign(0) TCGA-QG-A5YW-01 7 22349654 22349654 C T RAPGEF5 5'UTR 0.24 TCGA-QG-A5YW-01 7 48634322 48634322 G T ABCA13 Missense_Mutation p.G4886V 0.43 probably_damaging(1) TCGA-QG-A5YW-01 7 5352635 5352636 - GAG TNRC18 In_Frame_Ins p.S2671dup 0.50 TCGA-QG-A5YW-01 7 73008617 73008617 G A MLXIPL Silent p.P809P 0.34 TCGA-QG-A5YW-01 7 872196 872196 C T SUN1 Missense_Mutation p.P12L 0.37 deleterious(0) probably_damaging(0.996) TCGA-QG-A5YW-01 7 89789145 89789145 A G STEAP1 Missense_Mutation p.K15E 0.38 tolerated_low_confidence(0.18) benign(0.002) TCGA-QG-A5YW-01 8 100654407 100654407 C T VPS13B Silent p.N1888N 0.46 TCGA-QG-A5YW-01 8 10467473 10467473 C A RP1L1 Nonsense_Mutation p.E1379* 0.48 TCGA-QG-A5YW-01 8 125076736 125076736 C T FER1L6 Silent p.D1159D 0.47 TCGA-QG-A5YW-01 8 143381873 143381873 G A TSNARE1 Missense_Mutation p.R422W 0.23 deleterious(0) probably_damaging(0.998) TCGA-QG-A5YW-01 8 38137186 38137186 T C WHSC1L1 Missense_Mutation p.D1211G 0.09 deleterious(0) probably_damaging(1) TCGA-QG-A5YW-01 8 52744003 52744003 C A PCMTD1 Splice_Site p.X236_splice 0.43 TCGA-QG-A5YW-01 8 77767948 77767948 C T ZFHX4 Missense_Mutation p.R2931C 0.14 probably_damaging(0.995) TCGA-QG-A5YW-01 8 77775849 77775849 G A ZFHX4 Missense_Mutation p.G3300D 0.20 probably_damaging(0.998) TCGA-QG-A5YW-01 8 89128891 89128891 G A MMP16 Missense_Mutation p.R310C 0.35 deleterious(0.03) benign(0.015) TCGA-QG-A5YW-01 9 115652546 115652546 G A SLC46A2 Missense_Mutation p.A139V 0.16 deleterious(0.03) probably_damaging(0.968) TCGA-QG-A5YW-01 9 123676528 123676528 G A TRAF1 Silent p.V93V 0.10 TCGA-QG-A5YW-01 9 131285959 131285959 G A GLE1 Missense_Mutation p.R244H 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-QG-A5YW-01 9 137779158 137779158 T C FCN2 Missense_Mutation p.L280P 0.33 deleterious(0) probably_damaging(0.986) TCGA-QG-A5YW-01 9 86585811 86585811 C T HNRNPK Splice_Site p.X370_splice 0.16 TCGA-QG-A5YW-01 9 99154815 99154815 C T ZNF367 Missense_Mutation p.C232Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-QG-A5YW-01 X 10174599 10174599 C T CLCN4 Missense_Mutation p.R253W 0.42 deleterious(0) probably_damaging(1) TCGA-QG-A5YW-01 X 105970490 105970490 G A RNF128 Nonsense_Mutation p.W116* 0.32 TCGA-QG-A5YW-01 X 107393383 107393383 T C ATG4A Silent p.G272G 0.31 TCGA-QG-A5YW-01 X 109561001 109561001 G A AMMECR1 Missense_Mutation p.P100L 0.40 tolerated(0.16) benign(0.042) TCGA-QG-A5YW-01 X 117788688 117788688 T G DOCK11 Missense_Mutation p.L1607V 0.49 deleterious(0) possibly_damaging(0.855) TCGA-QG-A5YW-01 X 123499617 123499617 C T SH2D1A Silent p.H48H 0.33 TCGA-QG-A5YW-01 X 125955209 125955209 G A CXorf64 Silent p.P196P 0.26 TCGA-QG-A5YW-01 X 131216439 131216439 G T FRMD7 Nonsense_Mutation p.S286* 0.37 TCGA-QG-A5YW-01 X 132161596 132161596 C T USP26 Missense_Mutation p.R218Q 0.41 tolerated(0.57) benign(0.002) TCGA-QG-A5YW-01 X 134494273 134494273 C T ZNF449 Missense_Mutation p.P277S 0.51 tolerated(0.25) benign(0.056) TCGA-QG-A5YW-01 X 140995997 140995997 C A MAGEC1 Missense_Mutation p.T936K 0.16 tolerated(0.17) unknown(0) TCGA-QG-A5YW-01 X 152823621 152823621 G A ATP2B3 Missense_Mutation p.D829N 0.34 deleterious(0) probably_damaging(0.965) TCGA-QG-A5YW-01 X 153578477 153578477 G A FLNA Nonsense_Mutation p.R2419* 0.28 TCGA-QG-A5YW-01 X 154090142 154090142 C T F8 Splice_Site p.X2192_splice 0.12 TCGA-QG-A5YW-01 X 154128193 154128193 T G F8 Missense_Mutation p.Y2074S 0.24 tolerated(0.32) benign(0.378) TCGA-QG-A5YW-01 X 154158536 154158536 T C F8 Missense_Mutation p.T1177A 0.28 deleterious(0.04) benign(0.196) TCGA-QG-A5YW-01 X 154159120 154159120 T - F8 Frame_Shift_Del p.N982Mfs*22 0.20 TCGA-QG-A5YW-01 X 37027957 37027957 G A FAM47C Missense_Mutation p.D492N 0.30 tolerated_low_confidence(0.09) benign(0.348) TCGA-QG-A5YW-01 X 38664412 38664412 C T MID1IP1 Silent p.P71P 0.35 TCGA-QG-A5YW-01 X 54953521 54953521 C A TRO Missense_Mutation p.D582E 0.27 tolerated(0.13) unknown(0) TCGA-QG-A5YW-01 X 54955036 54955036 G A TRO Missense_Mutation p.V627M 0.05 deleterious(0.02) unknown(0) TCGA-QG-A5YW-01 X 72224367 72224367 C A PABPC1L2B 3'UTR 0.18 TCGA-QG-A5YW-01 X 77913023 77913023 T C ZCCHC5 Missense_Mutation p.S299G 0.32 tolerated(0.09) benign(0.009) TCGA-QG-A5YW-01 X 77913026 77913026 G T ZCCHC5 Missense_Mutation p.Q298K 0.31 deleterious(0.04) probably_damaging(0.994) TCGA-QG-A5YW-01 X 78217299 78217299 T C P2RY10 3'UTR 0.11 TCGA-QG-A5YX-01 10 12940439 12940439 G A CCDC3 Missense_Mutation p.R264C 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.533) TCGA-QG-A5YX-01 10 132891551 132891551 G A TCERG1L Silent p.Y545Y 0.53 TCGA-QG-A5YX-01 10 27422981 27422981 G T YME1L1 Missense_Mutation p.N311K 0.32 tolerated(0.18) benign(0.045) TCGA-QG-A5YX-01 10 69961672 69961672 C T MYPN Missense_Mutation p.R1194C 0.43 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YX-01 11 119209919 119209919 T G C1QTNF5 3'UTR 0.40 TCGA-QG-A5YX-01 11 124764190 124764190 C T ROBO4 Missense_Mutation p.A409T 0.46 tolerated(0.23) benign(0.009) TCGA-QG-A5YX-01 11 64361234 64361234 G T SLC22A12 Silent p.L263L 0.45 TCGA-QG-A5YX-01 11 65350903 65350903 G T EHBP1L1 Missense_Mutation p.E920D 0.40 tolerated(0.05) benign(0.395) TCGA-QG-A5YX-01 11 72469652 72469652 G A STARD10 Missense_Mutation p.R128C 0.49 deleterious(0) probably_damaging(1) TCGA-QG-A5YX-01 11 94231648 94231648 T C ANKRD49 Missense_Mutation p.Y224H 0.33 tolerated(0.37) possibly_damaging(0.827) TCGA-QG-A5YX-01 12 113711064 113711064 G A TPCN1 Missense_Mutation p.V343I 0.43 tolerated(0.13) benign(0.078) TCGA-QG-A5YX-01 12 5154337 5154337 C T KCNA5 Missense_Mutation p.R342C 0.41 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YX-01 12 57572217 57572217 G A LRP1 Silent p.S1479S 0.47 TCGA-QG-A5YX-01 12 79747398 79747398 C T SYT1 Silent p.S309S 0.46 TCGA-QG-A5YX-01 13 37271618 37271619 - A SERTM1 3'UTR 0.27 TCGA-QG-A5YX-01 13 53421285 53421285 G A PCDH8 Silent p.C429C 0.69 TCGA-QG-A5YX-01 14 101349515 101349515 C T RTL1 Silent p.P537P 0.42 TCGA-QG-A5YX-01 14 102028995 102028995 G A DIO3 3'UTR 0.32 TCGA-QG-A5YX-01 14 105418938 105418938 C T AHNAK2 Silent p.A950A 0.30 TCGA-QG-A5YX-01 14 23848737 23848737 G A CMTM5 3'UTR 0.59 TCGA-QG-A5YX-01 14 89091351 89091351 G A EML5 Nonsense_Mutation p.R1621* 0.33 TCGA-QG-A5YX-01 14 94088050 94088050 A - UNC79 Frame_Shift_Del p.K1316Sfs*12 0.50 TCGA-QG-A5YX-01 15 25932891 25932891 G A ATP10A Nonsense_Mutation p.R1084* 0.44 TCGA-QG-A5YX-01 15 27017881 27017881 G A GABRB3 Missense_Mutation p.T40M 0.29 deleterious(0) probably_damaging(0.976) TCGA-QG-A5YX-01 15 41828392 41828392 C T RPAP1 Missense_Mutation p.V119M 0.42 deleterious(0) probably_damaging(0.999) TCGA-QG-A5YX-01 15 49254745 49254745 G A SHC4 Silent p.T156T 0.46 TCGA-QG-A5YX-01 15 66618620 66618620 C T DIS3L Missense_Mutation p.R707C 0.07 deleterious(0.02) possibly_damaging(0.631) TCGA-QG-A5YX-01 15 76630227 76630227 C - ISL2 Frame_Shift_Del p.E57Sfs*14 0.33 TCGA-QG-A5YX-01 16 20380897 20380897 C T PDILT Missense_Mutation p.A345T 0.37 tolerated(0.17) benign(0.042) TCGA-QG-A5YX-01 16 2130311 2130311 G A TSC2 Silent p.T1181T 0.33 TCGA-QG-A5YX-01 16 2231476 2231476 G A CASKIN1 Silent p.I631I 0.43 TCGA-QG-A5YX-01 16 2578585 2578585 C G AMDHD2 Missense_Mutation p.P332R 0.38 deleterious(0.02) benign(0.001) TCGA-QG-A5YX-01 16 31092915 31092915 G A ZNF646 Missense_Mutation p.R1757Q 0.32 tolerated(0.41) benign(0.005) TCGA-QG-A5YX-01 16 3543818 3543818 C T C16orf90 3'UTR 0.40 TCGA-QG-A5YX-01 16 70815788 70815788 G A VAC14 Silent p.Y310Y 0.37 TCGA-QG-A5YX-01 17 36064953 36064953 G A HNF1B Missense_Mutation p.P437L 0.35 tolerated(0.16) benign(0.168) TCGA-QG-A5YX-01 17 36485585 36485586 - T GPR179 Frame_Shift_Ins p.R1290Efs*59 0.23 TCGA-QG-A5YX-01 17 38936678 38936678 G A KRT27 Silent p.S186S 0.15 TCGA-QG-A5YX-01 17 63526124 63526124 C A AXIN2 Silent p.R834R 0.30 TCGA-QG-A5YX-01 17 63554349 63554365 TACTCGTAAAGTTTTGG - AXIN2 Frame_Shift_Del p.T125Sfs*10 0.25 TCGA-QG-A5YX-01 17 71201784 71201784 C G COG1 Missense_Mutation p.D825E 0.30 tolerated(1) benign(0) TCGA-QG-A5YX-01 17 71239076 71239076 G A C17orf80 Missense_Mutation p.G555S 0.29 tolerated(0.07) benign(0.004) TCGA-QG-A5YX-01 17 73150528 73150528 G A HN1 5'UTR 0.21 TCGA-QG-A5YX-01 17 74004439 74004439 T C EVPL Missense_Mutation p.E1616G 0.24 deleterious(0) benign(0.415) TCGA-QG-A5YX-01 17 7577575 7577575 A G TP53 Missense_Mutation p.Y236H 0.67 deleterious(0) probably_damaging(0.994) TCGA-QG-A5YX-01 18 48604794 48604800 TACTTCA - SMAD4 Frame_Shift_Del p.L540Pfs*10 0.76 TCGA-QG-A5YX-01 19 10132408 10132408 C T RDH8 Missense_Mutation p.R327W 0.42 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-QG-A5YX-01 19 43865618 43865618 G A CD177 3'UTR 0.19 TCGA-QG-A5YX-01 19 47278765 47278765 G A SLC1A5 3'UTR 0.50 TCGA-QG-A5YX-01 19 57889440 57889440 C T ZNF547 Missense_Mutation p.H366Y 0.39 tolerated(0.2) benign(0.005) TCGA-QG-A5YX-01 19 7806677 7806677 T A CD209 3'UTR 0.42 TCGA-QG-A5YX-01 19 8152088 8152088 G A FBN3 Silent p.D2209D 0.45 TCGA-QG-A5YX-01 1 114255923 114255924 - A PHTF1 Frame_Shift_Ins p.S254Ffs*8 0.33 TCGA-QG-A5YX-01 1 145473383 145473383 C T ANKRD34A Missense_Mutation p.R19C 0.46 deleterious(0) probably_damaging(0.998) TCGA-QG-A5YX-01 1 152323759 152323759 G T FLG2 Missense_Mutation p.T2168K 0.39 benign(0.046) TCGA-QG-A5YX-01 1 160523614 160523614 C A CD84 Intron 0.09 TCGA-QG-A5YX-01 1 175375433 175375433 G A TNR Missense_Mutation p.R140W 0.41 deleterious(0) probably_damaging(1) TCGA-QG-A5YX-01 1 208200628 208200628 T - PLXNA2 Frame_Shift_Del p.K1882Rfs*40 0.38 TCGA-QG-A5YX-01 1 210857317 210857317 C T KCNH1 Missense_Mutation p.R759Q 0.43 tolerated(0.8) benign(0.002) TCGA-QG-A5YX-01 1 222696970 222696970 C T HHIPL2 Silent p.P624P 0.40 TCGA-QG-A5YX-01 1 228462128 228462128 C T OBSCN Missense_Mutation p.A2264V 0.51 benign(0.408) TCGA-QG-A5YX-01 1 32096133 32096133 G A PEF1 3'UTR 0.29 TCGA-QG-A5YX-01 1 6214790 6214790 C T CHD5 Silent p.P225P 0.39 TCGA-QG-A5YX-01 20 2644829 2644829 C T IDH3B Silent p.A2A 0.29 TCGA-QG-A5YX-01 20 60909045 60909045 G A LAMA5 Silent p.L930L 0.32 TCGA-QG-A5YX-01 22 23615321 23615321 G C BCR Splice_Site p.X658_splice 0.37 TCGA-QG-A5YX-01 22 25144919 25144919 C T PIWIL3 Silent p.P468P 0.33 TCGA-QG-A5YX-01 22 45939339 45939339 G A FBLN1 Silent p.T418T 0.48 TCGA-QG-A5YX-01 2 135095832 135095832 G A MGAT5 Silent p.A216A 0.55 TCGA-QG-A5YX-01 2 15555785 15555785 C T NBAS Missense_Mutation p.R941H 0.30 deleterious(0) possibly_damaging(0.601) TCGA-QG-A5YX-01 2 171699128 171699128 C A GAD1 Intron 0.52 TCGA-QG-A5YX-01 2 179456349 179456349 G A TTN Missense_Mutation p.P20066L 0.22 TCGA-QG-A5YX-01 2 210685083 210685083 C A UNC80 Missense_Mutation p.R671S 0.48 probably_damaging(0.979) TCGA-QG-A5YX-01 2 29225459 29225459 G A FAM179A Missense_Mutation p.R162Q 0.26 tolerated(0.05) possibly_damaging(0.88) TCGA-QG-A5YX-01 2 66691320 66691320 C T MEIS1 Missense_Mutation p.T237M 0.66 deleterious(0.01) benign(0.238) TCGA-QG-A5YX-01 2 84517813 84517813 G A FUNDC2P2 RNA 0.38 TCGA-QG-A5YX-01 2 95522775 95522775 G A ANKRD20A8P RNA 0.33 TCGA-QG-A5YX-01 3 119176961 119176962 - A TMEM39A Frame_Shift_Ins p.I81Hfs*16 0.33 TCGA-QG-A5YX-01 3 130329547 130329547 G A COL6A6 Missense_Mutation p.G1603S 0.37 deleterious(0) probably_damaging(1) TCGA-QG-A5YX-01 3 136078111 136078111 C A STAG1 Missense_Mutation p.G939C 0.38 deleterious(0.02) benign(0.18) TCGA-QG-A5YX-01 3 178936083 178936083 A G PIK3CA Missense_Mutation p.E542G 0.44 tolerated(0.07) benign(0.286) TCGA-QG-A5YX-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.45 tolerated(0.11) possibly_damaging(0.529) TCGA-QG-A5YX-01 3 195594599 195594599 G A TNK2 Missense_Mutation p.P920L 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.761) TCGA-QG-A5YX-01 3 40231474 40231474 C T MYRIP Silent p.S395S 0.32 TCGA-QG-A5YX-01 3 52386627 52386627 C T DNAH1 Silent p.N977N 0.37 TCGA-QG-A5YX-01 4 119951402 119951402 G C SYNPO2 Missense_Mutation p.G491A 0.38 deleterious(0) probably_damaging(1) TCGA-QG-A5YX-01 4 153244178 153244178 A - FBXW7 Frame_Shift_Del p.L660Qfs*47 0.32 TCGA-QG-A5YX-01 4 177650840 177650840 T G VEGFC Missense_Mutation p.M70L 0.43 tolerated(0.44) probably_damaging(0.955) TCGA-QG-A5YX-01 4 184931655 184931655 G A STOX2 Missense_Mutation p.C555Y 0.21 deleterious_low_confidence(0.02) benign(0.252) TCGA-QG-A5YX-01 4 187115651 187115651 C T CYP4V2 Intron 0.29 TCGA-QG-A5YX-01 4 71063034 71063034 T G ODAM Missense_Mutation p.L46R 0.42 deleterious(0.04) benign(0.265) TCGA-QG-A5YX-01 4 81284008 81284008 T A C4orf22 Missense_Mutation p.I71N 0.09 tolerated(0.48) benign(0.306) TCGA-QG-A5YX-01 5 126206443 126206443 C T MARCH3 Missense_Mutation p.R215H 0.67 deleterious(0) possibly_damaging(0.87) TCGA-QG-A5YX-01 5 140257343 140257343 G T PCDHA12 Missense_Mutation p.E762D 0.42 tolerated_low_confidence(0.07) possibly_damaging(0.501) TCGA-QG-A5YX-01 5 140476803 140476803 G A PCDHB2 3'UTR 0.41 TCGA-QG-A5YX-01 5 140516543 140516543 C T PCDHB5 Silent p.N509N 0.46 TCGA-QG-A5YX-01 5 140627536 140627536 G A PCDHB15 3'UTR 0.26 TCGA-QG-A5YX-01 5 140731726 140731726 G A PCDHGB1 Silent p.A633A 0.36 TCGA-QG-A5YX-01 5 150911206 150911206 G A FAT2 Silent p.T3251T 0.41 TCGA-QG-A5YX-01 5 151170526 151170526 C T G3BP1 Missense_Mutation p.T85M 0.47 deleterious(0.04) benign(0.312) TCGA-QG-A5YX-01 5 178564886 178564886 C T ADAMTS2 Missense_Mutation p.R612H 0.46 deleterious(0.01) possibly_damaging(0.532) TCGA-QG-A5YX-01 5 251542 251542 C T SDHA Missense_Mutation p.R585W 0.29 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-QG-A5YX-01 5 32058087 32058087 C T PDZD2 Missense_Mutation p.P693L 0.47 deleterious(0) probably_damaging(1) TCGA-QG-A5YX-01 5 83402535 83402535 G A EDIL3 Missense_Mutation p.R195C 0.39 deleterious(0) probably_damaging(1) TCGA-QG-A5YX-01 6 13487089 13487089 G A GFOD1 Missense_Mutation p.L12F 0.47 tolerated(0.05) possibly_damaging(0.666) TCGA-QG-A5YX-01 6 159654494 159654494 G T FNDC1 Missense_Mutation p.A984S 0.50 tolerated_low_confidence(0.29) unknown(0) TCGA-QG-A5YX-01 6 29796592 29796592 G A HLA-G Missense_Mutation p.A206T 0.53 tolerated_low_confidence(0.17) benign(0.003) TCGA-QG-A5YX-01 6 30570163 30570175 CGTGAGGACGATG - PPP1R10 Frame_Shift_Del p.H751Kfs*162 0.36 TCGA-QG-A5YX-01 6 3113388 3113388 C G RIPK1 Missense_Mutation p.Q611E 0.42 tolerated(1) benign(0.401) TCGA-QG-A5YX-01 6 41712199 41712199 G T PGC Silent p.V88V 0.38 TCGA-QG-A5YX-01 6 90460181 90460181 C G MDN1 Missense_Mutation p.A1100P 0.56 probably_damaging(0.995) TCGA-QG-A5YX-01 6 96654334 96654334 T - FUT9 3'UTR 0.33 TCGA-QG-A5YX-01 7 123346345 123346345 C T WASL Missense_Mutation p.R141Q 0.30 deleterious(0) unknown(0) TCGA-QG-A5YX-01 7 21985492 21985492 G A CDCA7L 5'UTR 0.45 TCGA-QG-A5YX-01 7 99687014 99687014 T C COPS6 Missense_Mutation p.S60P 0.42 deleterious(0) possibly_damaging(0.53) TCGA-QG-A5YX-01 8 10466792 10466792 G A RP1L1 Missense_Mutation p.R1606C 0.30 unknown(0) TCGA-QG-A5YX-01 8 10622948 10622948 G A PINX1 Missense_Mutation p.T317M 0.32 tolerated(0.12) benign(0.04) TCGA-QG-A5YX-01 8 10755691 10755691 C A XKR6 Missense_Mutation p.R566I 0.34 deleterious(0) probably_damaging(0.972) TCGA-QG-A5YX-01 8 130762266 130762266 G T GSDMC Missense_Mutation p.P395T 0.33 tolerated(0.4) benign(0.082) TCGA-QG-A5YX-01 8 38280667 38280667 C T FGFR1 Intron 0.27 TCGA-QG-A5YX-01 8 41355101 41355101 G A GOLGA7 Missense_Mutation p.G62D 0.35 tolerated(0.12) possibly_damaging(0.644) TCGA-QG-A5YX-01 8 89128877 89128877 C T MMP16 Silent p.P314P 0.23 TCGA-QG-A5YX-01 9 136536697 136536697 G A SARDH Silent p.N762N 0.34 TCGA-QG-A5YX-01 9 140267914 140267914 G A EXD3 Silent p.C86C 0.53 TCGA-QG-A5YX-01 9 26995589 26995589 A G LRRC19 Missense_Mutation p.F348S 0.49 deleterious(0) probably_damaging(0.983) TCGA-QG-A5YX-01 9 34514422 34514422 G A DNAI1 Missense_Mutation p.D534N 0.43 tolerated(0.09) benign(0.003) TCGA-QG-A5YX-01 9 95179094 95179094 G A OMD Silent p.P249P 0.45 TCGA-QG-A5YX-01 X 46480475 46480475 C T SLC9A7 Missense_Mutation p.R586K 0.44 tolerated(0.47) benign(0.004) TCGA-QG-A5YX-01 X 63411276 63411276 G A AMER1 Nonsense_Mutation p.R631* 0.67 TCGA-QG-A5YX-01 X 99662512 99662512 C T PCDH19 Missense_Mutation p.A362T 0.87 deleterious(0) possibly_damaging(0.902) TCGA-QG-A5Z1-01 10 111883883 111883883 G A ADD3 Missense_Mutation p.D418N 0.28 deleterious(0.01) possibly_damaging(0.838) TCGA-QG-A5Z1-01 10 69991734 69991734 A T ATOH7 5'UTR 0.37 TCGA-QG-A5Z1-01 10 79782028 79782028 G A POLR3A Nonsense_Mutation p.R254* 0.40 TCGA-QG-A5Z1-01 11 119206007 119206007 C T RNF26 Missense_Mutation p.R59C 0.39 deleterious(0.03) benign(0.149) TCGA-QG-A5Z1-01 11 128934783 128934783 T C ARHGAP32 Missense_Mutation p.I225V 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-QG-A5Z1-01 11 132290081 132290081 T A OPCML 3'UTR 0.41 TCGA-QG-A5Z1-01 11 133402246 133402246 C T OPCML 5'UTR 0.34 TCGA-QG-A5Z1-01 11 20622871 20622871 C T SLC6A5 Missense_Mutation p.A67V 0.29 tolerated_low_confidence(0.12) benign(0.038) TCGA-QG-A5Z1-01 11 64004656 64004660 CAGAC - VEGFB Splice_Site p.X125_splice 0.51 TCGA-QG-A5Z1-01 11 89075294 89075294 C T NOX4 Missense_Mutation p.V429M 0.35 deleterious(0) probably_damaging(0.989) TCGA-QG-A5Z1-01 11 92531598 92531598 C T FAT3 Missense_Mutation p.R1807W 0.53 possibly_damaging(0.67) TCGA-QG-A5Z1-01 12 122247808 122247808 C T SETD1B Silent p.D319D 0.45 TCGA-QG-A5Z1-01 12 130841467 130841467 A G PIWIL1 Missense_Mutation p.D470G 0.33 tolerated(0.11) benign(0.002) TCGA-QG-A5Z1-01 12 133225617 133225617 C T POLE Silent p.A1349A 0.11 TCGA-QG-A5Z1-01 12 48921867 48921867 C T OR8S1 Missense_Mutation p.A354V 0.10 possibly_damaging(0.499) TCGA-QG-A5Z1-01 12 52772091 52772091 G A KRT84 Silent p.G510G 0.27 TCGA-QG-A5Z1-01 12 56814457 56814457 C T TIMELESS Missense_Mutation p.V1042I 0.42 tolerated(0.43) benign(0.044) TCGA-QG-A5Z1-01 13 29600559 29600559 C A MTUS2 Missense_Mutation p.T585N 0.57 tolerated(0.05) benign(0.067) TCGA-QG-A5Z1-01 13 36700182 36700182 C T DCLK1 Silent p.P31P 0.58 TCGA-QG-A5Z1-01 13 52026688 52026688 G A INTS6 5'UTR 0.18 TCGA-QG-A5Z1-01 14 105408553 105408553 C A AHNAK2 Missense_Mutation p.G4412V 0.42 possibly_damaging(0.623) TCGA-QG-A5Z1-01 14 20612565 20612565 G A OR4N5 Missense_Mutation p.R224H 0.31 tolerated(0.57) benign(0.004) TCGA-QG-A5Z1-01 14 23240510 23240510 G A OXA1L Missense_Mutation p.R439Q 0.37 tolerated(0.5) benign(0.004) TCGA-QG-A5Z1-01 14 64545314 64545314 A C SYNE2 Missense_Mutation p.E3718A 0.47 probably_damaging(0.914) TCGA-QG-A5Z1-01 14 93412799 93412799 C A ITPK1 Nonsense_Mutation p.E260* 0.41 TCGA-QG-A5Z1-01 14 95916378 95916378 G A SYNE3 Missense_Mutation p.R447W 0.42 tolerated(0.08) possibly_damaging(0.776) TCGA-QG-A5Z1-01 15 28996727 28996727 G A WHAMMP2 RNA 0.79 TCGA-QG-A5Z1-01 15 49426558 49426558 G A COPS2 Silent p.L239L 0.84 TCGA-QG-A5Z1-01 16 11362942 11362942 T C TNP2 Missense_Mutation p.T60A 0.44 tolerated(0.54) possibly_damaging(0.523) TCGA-QG-A5Z1-01 16 12758835 12758835 C T CPPED1 Missense_Mutation p.A285T 0.39 tolerated(0.37) benign(0.006) TCGA-QG-A5Z1-01 16 32266447 32266447 G A TP53TG3D 3'UTR 0.33 TCGA-QG-A5Z1-01 16 48139062 48139062 C T ABCC12 Silent p.T887T 0.35 TCGA-QG-A5Z1-01 16 70400724 70400724 A G DDX19A Missense_Mutation p.Y327C 0.31 deleterious(0) possibly_damaging(0.887) TCGA-QG-A5Z1-01 16 72830293 72830293 G A ZFHX3 Silent p.I2096I 0.09 TCGA-QG-A5Z1-01 16 89696806 89696806 C T DPEP1 5'UTR 0.36 TCGA-QG-A5Z1-01 17 54672621 54672621 T G NOG 3'UTR 0.27 TCGA-QG-A5Z1-01 17 7577127 7577127 C A TP53 Nonsense_Mutation p.E271* 0.62 TCGA-QG-A5Z1-01 18 44561704 44561704 A C TCEB3B 5'UTR 0.10 TCGA-QG-A5Z1-01 19 1487226 1487226 C T PCSK4 Missense_Mutation p.A257T 0.43 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z1-01 19 16687718 16687718 T - MED26 Frame_Shift_Del p.D308Vfs*113 0.36 TCGA-QG-A5Z1-01 19 1986860 1986860 T C BTBD2 Missense_Mutation p.N462S 0.33 tolerated(0.13) benign(0.012) TCGA-QG-A5Z1-01 19 34262966 34262966 G A CHST8 Silent p.A91A 0.42 TCGA-QG-A5Z1-01 19 34291419 34291419 C A KCTD15 Silent p.G20G 0.36 TCGA-QG-A5Z1-01 19 36253254 36253254 G A C19orf55 Silent p.K180K 0.13 TCGA-QG-A5Z1-01 19 38160916 38160916 C T ZNF781 Missense_Mutation p.R45H 0.37 tolerated(0.41) benign(0) TCGA-QG-A5Z1-01 19 39216503 39216503 C T ACTN4 Missense_Mutation p.A717V 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-QG-A5Z1-01 19 39516067 39516067 C T FBXO27 Missense_Mutation p.R279Q 0.41 tolerated(0.29) benign(0.02) TCGA-QG-A5Z1-01 19 44500566 44500566 G C ZNF155 Missense_Mutation p.C197S 0.30 tolerated(0.44) possibly_damaging(0.882) TCGA-QG-A5Z1-01 19 45004256 45004256 T G ZNF180 Missense_Mutation p.S13R 0.34 deleterious_low_confidence(0.03) benign(0) TCGA-QG-A5Z1-01 19 52147066 52147066 G T SIGLEC14 Silent p.G326G 0.26 TCGA-QG-A5Z1-01 19 53911583 53911583 G A ZNF765 Missense_Mutation p.A259T 0.38 tolerated(0.37) benign(0.01) TCGA-QG-A5Z1-01 19 55994166 55994166 C T ZNF628 Missense_Mutation p.R536W 0.06 deleterious(0) probably_damaging(0.988) TCGA-QG-A5Z1-01 19 57175103 57175103 C T ZNF835 Silent p.A488A 0.39 TCGA-QG-A5Z1-01 19 58806679 58806679 G A ZNF8 Missense_Mutation p.R502H 0.40 tolerated(0.08) possibly_damaging(0.763) TCGA-QG-A5Z1-01 19 6375496 6375496 C T PSPN Missense_Mutation p.A94T 0.35 deleterious(0.05) probably_damaging(1) TCGA-QG-A5Z1-01 1 11586785 11586785 G A PTCHD2 Silent p.A897A 0.06 TCGA-QG-A5Z1-01 1 12856020 12856020 C T PRAMEF1 Missense_Mutation p.R434W 0.15 deleterious(0.03) benign(0.005) TCGA-QG-A5Z1-01 1 155265021 155265021 G A PKLR Missense_Mutation p.R194W 0.13 deleterious(0) possibly_damaging(0.567) TCGA-QG-A5Z1-01 1 156884462 156884462 C - PEAR1 Frame_Shift_Del p.P997Lfs*65 0.30 TCGA-QG-A5Z1-01 1 176564106 176564106 C T PAPPA2 Silent p.L456L 0.06 TCGA-QG-A5Z1-01 1 182847200 182847200 A G DHX9 Missense_Mutation p.Y748C 0.41 deleterious(0) probably_damaging(1) TCGA-QG-A5Z1-01 1 18554493 18554493 G A IGSF21 Missense_Mutation p.V58M 0.46 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z1-01 1 193150228 193150228 T G B3GALT2 Silent p.L155L 0.43 TCGA-QG-A5Z1-01 1 205057852 205057852 G C RBBP5 3'UTR 0.36 TCGA-QG-A5Z1-01 1 248617052 248617052 G A OR2T2 Silent p.A318A 0.25 TCGA-QG-A5Z1-01 1 897828 897828 G A KLHL17 Missense_Mutation p.A269T 0.08 tolerated(0.55) benign(0.004) TCGA-QG-A5Z1-01 20 10621470 10621470 C A JAG1 Nonsense_Mutation p.E1054* 0.30 TCGA-QG-A5Z1-01 20 10621543 10621543 C G JAG1 Missense_Mutation p.K1029N 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-QG-A5Z1-01 20 10622450 10622450 C A JAG1 Missense_Mutation p.G888V 0.28 deleterious(0.02) probably_damaging(1) TCGA-QG-A5Z1-01 20 23066072 23066072 G A CD93 Missense_Mutation p.S253L 0.25 deleterious(0.03) benign(0.023) TCGA-QG-A5Z1-01 20 25459761 25459761 G A NINL Missense_Mutation p.R667C 0.23 tolerated(0.08) benign(0.004) TCGA-QG-A5Z1-01 20 44675056 44675056 C T SLC12A5 Missense_Mutation p.R613C 0.04 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z1-01 21 32253627 32253627 G A KRTAP11-1 Nonsense_Mutation p.R73* 0.37 TCGA-QG-A5Z1-01 21 41032932 41032932 C T B3GALT5 Missense_Mutation p.A149V 0.13 tolerated(0.12) benign(0.045) TCGA-QG-A5Z1-01 22 18028887 18028887 G A CECR2 Missense_Mutation p.A1283T 0.37 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z1-01 22 22007633 22007633 C T MIR130B RNA 0.10 TCGA-QG-A5Z1-01 22 23047164 23047164 G A IGLV3-22 Missense_Mutation p.E68K 0.60 tolerated(1) benign(0.003) TCGA-QG-A5Z1-01 22 24717441 24717441 C T SPECC1L Missense_Mutation p.R165C 0.35 deleterious(0.04) probably_damaging(0.935) TCGA-QG-A5Z1-01 22 50279871 50279871 G A ZBED4 Missense_Mutation p.R854Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-QG-A5Z1-01 2 101667058 101667058 G A TBC1D8 Missense_Mutation p.T211M 0.35 deleterious(0) probably_damaging(0.967) TCGA-QG-A5Z1-01 2 125284983 125284983 C T CNTNAP5 Silent p.S532S 0.42 TCGA-QG-A5Z1-01 2 142004911 142004911 C T LRP1B Missense_Mutation p.C159Y 0.38 possibly_damaging(0.712) TCGA-QG-A5Z1-01 2 177202358 177202358 A G MTX2 Missense_Mutation p.Y253C 0.06 deleterious(0) probably_damaging(0.945) TCGA-QG-A5Z1-01 2 179544333 179544333 C T TTN Silent p.P11219P 0.08 TCGA-QG-A5Z1-01 2 202938290 202938290 C A AC079354.1 5'UTR 0.48 TCGA-QG-A5Z1-01 2 208993034 208993034 G A CRYGC Missense_Mutation p.R140W 0.35 deleterious(0.02) benign(0.132) TCGA-QG-A5Z1-01 2 219501297 219501297 C G PLCD4 Silent p.S762S 0.41 TCGA-QG-A5Z1-01 2 220356851 220356851 G A SPEG Silent p.P3160P 0.39 TCGA-QG-A5Z1-01 2 237123067 237123067 G A ASB18 Missense_Mutation p.R347C 0.39 tolerated(0.19) possibly_damaging(0.776) TCGA-QG-A5Z1-01 3 13670694 13670694 G A FBLN2 Missense_Mutation p.R915H 0.21 tolerated(0.07) benign(0.046) TCGA-QG-A5Z1-01 3 142274935 142274936 AA - ATR Frame_Shift_Del p.S709Yfs*25 0.08 TCGA-QG-A5Z1-01 3 173996842 173996842 C T NLGN1 Nonsense_Mutation p.R351* 0.53 TCGA-QG-A5Z1-01 3 179689426 179689426 G A PEX5L Silent p.L17L 0.50 TCGA-QG-A5Z1-01 3 186917725 186917725 C T RTP1 Missense_Mutation p.A220V 0.54 tolerated(0.33) benign(0.006) TCGA-QG-A5Z1-01 3 24169017 24169017 G A THRB Missense_Mutation p.L373F 0.24 deleterious(0.02) possibly_damaging(0.679) TCGA-QG-A5Z1-01 3 49688295 49688295 C T BSN Missense_Mutation p.A590V 0.07 unknown(0) TCGA-QG-A5Z1-01 3 58134561 58134561 G A FLNB Missense_Mutation p.V2056M 0.14 deleterious(0.01) probably_damaging(0.95) TCGA-QG-A5Z1-01 4 126329790 126329790 G A FAT4 Missense_Mutation p.G1921S 0.25 probably_damaging(1) TCGA-QG-A5Z1-01 4 160253757 160253757 A C RAPGEF2 Missense_Mutation p.K520N 0.35 deleterious(0.04) benign(0.271) TCGA-QG-A5Z1-01 4 166231876 166231876 C A KLHL2 Missense_Mutation p.A408D 0.38 deleterious(0) probably_damaging(0.993) TCGA-QG-A5Z1-01 4 31144326 31144326 A T PCDH7 Missense_Mutation p.K1208M 0.45 deleterious(0) possibly_damaging(0.507) TCGA-QG-A5Z1-01 4 48514498 48514498 C T FRYL Silent p.Q2715Q 0.36 TCGA-QG-A5Z1-01 4 71847816 71847816 T C MOB1B 3'UTR 0.29 TCGA-QG-A5Z1-01 4 8307726 8307726 G A HTRA3 Missense_Mutation p.V409I 0.37 tolerated(0.59) probably_damaging(0.996) TCGA-QG-A5Z1-01 4 8582987 8582987 C T GPR78 Missense_Mutation p.A93V 0.38 deleterious(0.01) probably_damaging(0.915) TCGA-QG-A5Z1-01 5 112174793 112174793 G T APC Nonsense_Mutation p.E1168* 0.47 TCGA-QG-A5Z1-01 5 127704881 127704881 T G FBN2 Missense_Mutation p.N748H 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-QG-A5Z1-01 5 1879886 1879886 C T IRX4 Silent p.T156T 0.05 TCGA-QG-A5Z1-01 6 137146352 137146352 G A PEX7 Missense_Mutation p.G44D 0.36 deleterious(0) probably_damaging(0.984) TCGA-QG-A5Z1-01 6 137323321 137323321 C T IL20RA Missense_Mutation p.G346R 0.39 tolerated(0.48) benign(0.003) TCGA-QG-A5Z1-01 6 147680328 147680328 G T STXBP5 Missense_Mutation p.R805L 0.09 deleterious(0) benign(0.103) TCGA-QG-A5Z1-01 6 15524695 15524695 C T DTNBP1 Intron 0.05 TCGA-QG-A5Z1-01 6 2948712 2948712 G A SERPINB6 Silent p.H317H 0.08 TCGA-QG-A5Z1-01 6 34499508 34499508 T - PACSIN1 Frame_Shift_Del p.V390Gfs*97 0.27 TCGA-QG-A5Z1-01 6 43227363 43227363 C T TTBK1 Missense_Mutation p.S448F 0.09 probably_damaging(0.969) TCGA-QG-A5Z1-01 6 56420177 56420177 G T DST Silent p.I2411I 0.37 TCGA-QG-A5Z1-01 6 76751736 76751736 G A IMPG1 Nonsense_Mutation p.R59* 0.41 TCGA-QG-A5Z1-01 7 100678211 100678211 G C MUC17 Missense_Mutation p.V1172L 0.05 unknown(0) TCGA-QG-A5Z1-01 7 102113047 102113047 G A LRWD1 Missense_Mutation p.A561T 0.12 tolerated(1) benign(0.001) TCGA-QG-A5Z1-01 7 106938716 106938716 C T COG5 Missense_Mutation p.R426H 0.45 deleterious(0) probably_damaging(0.993) TCGA-QG-A5Z1-01 7 135333250 135333250 C G NUP205 Missense_Mutation p.F1995L 0.15 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z1-01 7 150270128 150270128 C T GIMAP4 Missense_Mutation p.R324C 0.31 tolerated(0.18) benign(0.001) TCGA-QG-A5Z1-01 7 150771882 150771882 G A SLC4A2 Missense_Mutation p.A1001T 0.11 deleterious(0) probably_damaging(1) TCGA-QG-A5Z1-01 7 64023396 64023396 A G ZNF680 5'UTR 0.33 TCGA-QG-A5Z1-01 7 74146939 74146940 - A GTF2I Nonsense_Mutation p.Y414* 0.16 TCGA-QG-A5Z1-01 7 98648568 98648568 A - SMURF1 Frame_Shift_Del p.F285Sfs*16 0.23 TCGA-QG-A5Z1-01 8 106813721 106813721 A C ZFPM2 Missense_Mutation p.K471Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-QG-A5Z1-01 8 106814959 106814959 G T ZFPM2 Missense_Mutation p.Q883H 0.34 deleterious(0.03) benign(0.01) TCGA-QG-A5Z1-01 8 113585829 113585829 T G CSMD3 Missense_Mutation p.M1315L 0.08 tolerated(0.7) benign(0.003) TCGA-QG-A5Z1-01 8 55372513 55372513 C T SOX17 Silent p.D401D 0.33 TCGA-QG-A5Z1-01 8 73848938 73848938 G A KCNB2 Missense_Mutation p.V450I 0.17 tolerated(0.05) benign(0.253) TCGA-QG-A5Z1-01 9 125627678 125627678 G A RC3H2 Silent p.G528G 0.13 TCGA-QG-A5Z1-01 9 140772517 140772517 C T CACNA1B Silent p.L44L 0.28 TCGA-QG-A5Z1-01 9 32632740 32632740 A G TAF1L Silent p.V946V 0.04 TCGA-QG-A5Z1-01 9 34093285 34093285 A C DCAF12 Missense_Mutation p.S341R 0.34 deleterious(0.01) possibly_damaging(0.83) TCGA-QG-A5Z1-01 9 99417041 99417041 G A AAED1 Silent p.Y69Y 0.35 TCGA-QG-A5Z1-01 X 109924729 109924729 G A CHRDL1 Silent p.H379H 0.74 TCGA-QG-A5Z1-01 X 134681069 134681069 C T DDX26B Silent p.S207S 0.80 TCGA-QG-A5Z1-01 X 153774332 153774332 G A G6PD Silent p.C43C 0.12 TCGA-QG-A5Z1-01 X 54777720 54777720 G T ITIH6 Missense_Mutation p.T1149K 0.79 tolerated(0.09) benign(0.005) TCGA-QG-A5Z2-01 10 102088967 102088967 C T PKD2L1 Splice_Site p.X117_splice 0.22 TCGA-QG-A5Z2-01 10 102739702 102739702 C T SEMA4G Missense_Mutation p.R361C 0.11 deleterious(0) probably_damaging(0.949) TCGA-QG-A5Z2-01 10 102891338 102891338 G A TLX1 Missense_Mutation p.A14T 0.29 tolerated(0.29) probably_damaging(0.959) TCGA-QG-A5Z2-01 10 106075025 106075025 A G ITPRIP Missense_Mutation p.L262P 0.23 deleterious(0) possibly_damaging(0.836) TCGA-QG-A5Z2-01 10 116620610 116620610 G A FAM160B1 Missense_Mutation p.A684T 0.21 tolerated(0.11) probably_damaging(0.921) TCGA-QG-A5Z2-01 10 118891717 118891717 G A VAX1 3'Flank 0.21 TCGA-QG-A5Z2-01 10 119001233 119001233 G A SLC18A2 Missense_Mutation p.R10H 0.16 deleterious(0.04) benign(0.191) TCGA-QG-A5Z2-01 10 119044128 119044128 C T PDZD8 Missense_Mutation p.A706T 0.23 tolerated(0.37) benign(0.031) TCGA-QG-A5Z2-01 10 121411198 121411198 C T BAG3 Missense_Mutation p.A4V 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-QG-A5Z2-01 10 124385448 124385448 G T DMBT1 Splice_Site p.X1750_splice 0.25 TCGA-QG-A5Z2-01 10 124907954 124907954 C T HMX2 Silent p.F20F 0.32 TCGA-QG-A5Z2-01 10 125804221 125804221 G T CHST15 Missense_Mutation p.P254Q 0.21 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 10 126673570 126673570 A T ZRANB1 3'UTR 0.07 TCGA-QG-A5Z2-01 10 126681303 126681303 T G CTBP2 Missense_Mutation p.Q913P 0.26 tolerated(0.08) probably_damaging(0.991) TCGA-QG-A5Z2-01 10 126715243 126715243 G C CTBP2 Silent p.G362G 0.08 TCGA-QG-A5Z2-01 10 129237359 129237359 A G DOCK1 Missense_Mutation p.D1689G 0.09 tolerated(0.28) benign(0.379) TCGA-QG-A5Z2-01 10 131666125 131666125 C - EBF3 Frame_Shift_Del p.G269Vfs*6 0.11 TCGA-QG-A5Z2-01 10 131757223 131757223 G A EBF3 Silent p.L154L 0.05 TCGA-QG-A5Z2-01 10 134691508 134691508 T - TTC40 Frame_Shift_Del p.E1364Rfs*56 0.24 TCGA-QG-A5Z2-01 10 134912201 134912201 G A GPR123 Silent p.A63A 0.26 TCGA-QG-A5Z2-01 10 13782541 13782541 G A FRMD4A Silent p.N195N 0.19 TCGA-QG-A5Z2-01 10 15726033 15726033 C T ITGA8 Missense_Mutation p.A180T 0.20 tolerated(0.57) benign(0.059) TCGA-QG-A5Z2-01 10 18250536 18250536 A C SLC39A12 Silent p.L96L 0.29 TCGA-QG-A5Z2-01 10 21804452 21804452 T C SKIDA1 Missense_Mutation p.E767G 0.26 deleterious(0) unknown(0) TCGA-QG-A5Z2-01 10 22634532 22634532 G - SPAG6 5'UTR 0.11 TCGA-QG-A5Z2-01 10 23319536 23319537 - A ARMC3 Frame_Shift_Ins p.E689Rfs*20 0.16 TCGA-QG-A5Z2-01 10 25464958 25464958 C A GPR158 Silent p.L203L 0.15 TCGA-QG-A5Z2-01 10 28897293 28897293 G C WAC Missense_Mutation p.L366F 0.13 deleterious(0.01) probably_damaging(0.957) TCGA-QG-A5Z2-01 10 3146071 3146071 C T PFKP Silent p.I185I 0.12 TCGA-QG-A5Z2-01 10 3174591 3174591 C T PFKP Missense_Mutation p.T623M 0.10 tolerated(0.12) benign(0.166) TCGA-QG-A5Z2-01 10 32740531 32740531 T - CCDC7 5'UTR 0.21 TCGA-QG-A5Z2-01 10 43882444 43882444 G A HNRNPF Missense_Mutation p.P297S 0.07 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 10 49917970 49917970 C T WDFY4 Missense_Mutation p.R65C 0.19 deleterious(0.02) possibly_damaging(0.724) TCGA-QG-A5Z2-01 10 50122112 50122112 T - LRRC18 Frame_Shift_Del p.K30Sfs*5 0.14 TCGA-QG-A5Z2-01 10 5139645 5139645 G A AKR1C3 Missense_Mutation p.R91Q 0.07 tolerated(0.19) benign(0.075) TCGA-QG-A5Z2-01 10 60559954 60559954 T C BICC1 Missense_Mutation p.S576P 0.06 tolerated(0.38) benign(0) TCGA-QG-A5Z2-01 10 60577384 60577384 G T BICC1 Missense_Mutation p.G866C 0.06 deleterious(0.02) probably_damaging(1) TCGA-QG-A5Z2-01 10 62652716 62652716 G A RHOBTB1 Missense_Mutation p.P112S 0.28 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 10 64575696 64575696 C T EGR2 Missense_Mutation p.A32T 0.25 tolerated(0.57) benign(0.053) TCGA-QG-A5Z2-01 10 70228044 70228044 G A DNA2 Missense_Mutation p.P179S 0.07 tolerated(0.25) benign(0.32) TCGA-QG-A5Z2-01 10 70775815 70775815 A - KIAA1279 Frame_Shift_Del p.I506* 0.27 TCGA-QG-A5Z2-01 10 71267297 71267297 T - TSPAN15 3'UTR 0.17 TCGA-QG-A5Z2-01 10 74100759 74100759 G A DNAJB12 Silent p.G243G 0.05 TCGA-QG-A5Z2-01 10 7605185 7605185 T C ITIH5 Missense_Mutation p.N897S 0.05 tolerated(0.28) benign(0.2) TCGA-QG-A5Z2-01 10 81275656 81275657 - A EIF5AL1 3'UTR 0.21 TCGA-QG-A5Z2-01 10 85994000 85994000 C A LRIT1 Missense_Mutation p.A242S 0.07 tolerated(0.22) benign(0.045) TCGA-QG-A5Z2-01 10 91066524 91066524 A - IFIT2 Frame_Shift_Del p.K272Rfs*3 0.10 TCGA-QG-A5Z2-01 10 95134645 95134645 G T MYOF Silent p.R726R 0.16 TCGA-QG-A5Z2-01 10 98105667 98105667 G A OPALIN 3'UTR 0.33 TCGA-QG-A5Z2-01 10 99126290 99126290 G A RRP12 Nonsense_Mutation p.R1102* 0.08 TCGA-QG-A5Z2-01 10 99129266 99129266 G A RRP12 Silent p.D957D 0.26 TCGA-QG-A5Z2-01 11 101834169 101834171 TCC - KIAA1377 In_Frame_Del p.P804del 0.10 TCGA-QG-A5Z2-01 11 106558339 106558339 G A GUCY1A2 Missense_Mutation p.S743L 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-QG-A5Z2-01 11 10875781 10875781 T - ZBED5 Frame_Shift_Del p.I238* 0.28 TCGA-QG-A5Z2-01 11 114453229 114453229 A G NXPE4 Missense_Mutation p.F204S 0.04 deleterious(0.03) probably_damaging(1) TCGA-QG-A5Z2-01 11 118770701 118770701 C T BCL9L Missense_Mutation p.A1111T 0.13 probably_damaging(0.998) TCGA-QG-A5Z2-01 11 118972955 118972955 C T DPAGT1 5'UTR 0.09 TCGA-QG-A5Z2-01 11 122829978 122829978 T C C11orf63 Missense_Mutation p.I721T 0.13 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 11 123756074 123756074 G A TMEM225 Missense_Mutation p.A20V 0.28 tolerated(0.13) benign(0.002) TCGA-QG-A5Z2-01 11 123988252 123988252 C T VWA5A Missense_Mutation p.R12W 0.33 deleterious(0) possibly_damaging(0.586) TCGA-QG-A5Z2-01 11 124765464 124765464 C A ROBO4 Nonsense_Mutation p.E309* 0.27 TCGA-QG-A5Z2-01 11 130339264 130339264 C T ADAMTS15 Silent p.N550N 0.33 TCGA-QG-A5Z2-01 11 134022864 134022864 T G NCAPD3 Missense_Mutation p.K1491T 0.30 deleterious(0.01) possibly_damaging(0.71) TCGA-QG-A5Z2-01 11 134257514 134257514 C T B3GAT1 Missense_Mutation p.V14M 0.10 deleterious_low_confidence(0.01) probably_damaging(0.912) TCGA-QG-A5Z2-01 11 1471991 1471991 G T BRSK2 Missense_Mutation p.G534C 0.28 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 11 1629527 1629527 C - KRTAP5-3 Frame_Shift_Del p.G30Afs*236 0.09 TCGA-QG-A5Z2-01 11 17190432 17190432 A G PIK3C2A Missense_Mutation p.V286A 0.12 tolerated_low_confidence(0.28) benign(0.002) TCGA-QG-A5Z2-01 11 17482089 17482089 G T ABCC8 Nonsense_Mutation p.C319* 0.19 TCGA-QG-A5Z2-01 11 17741443 17741443 G T MYOD1 Silent p.P38P 0.10 TCGA-QG-A5Z2-01 11 293881 293881 G T ATHL1 Missense_Mutation p.G556C 0.07 tolerated(0.05) benign(0.021) TCGA-QG-A5Z2-01 11 34112223 34112223 A T CAPRIN1 Missense_Mutation p.T518S 0.07 deleterious(0.03) benign(0.345) TCGA-QG-A5Z2-01 11 34140015 34140015 G T NAT10 Missense_Mutation p.G249C 0.07 deleterious(0.01) benign(0.087) TCGA-QG-A5Z2-01 11 35016604 35016604 G A PDHX Missense_Mutation p.R464H 0.31 tolerated(1) benign(0.002) TCGA-QG-A5Z2-01 11 3726529 3726529 G A NUP98 Missense_Mutation p.R995C 0.19 tolerated(0.1) possibly_damaging(0.707) TCGA-QG-A5Z2-01 11 3803356 3803356 T A NUP98 5'UTR 0.21 TCGA-QG-A5Z2-01 11 45671262 45671262 C T CHST1 Silent p.E404E 0.54 TCGA-QG-A5Z2-01 11 45937828 45937828 G A PEX16 Silent p.L59L 0.10 TCGA-QG-A5Z2-01 11 4608543 4608543 G A OR52I2 Silent p.T167T 0.14 TCGA-QG-A5Z2-01 11 46398102 46398102 C T DGKZ Silent p.I918I 0.16 TCGA-QG-A5Z2-01 11 46564835 46564835 C T AMBRA1 Silent p.L244L 0.08 TCGA-QG-A5Z2-01 11 4661590 4661590 C A OR51D1 Silent p.S190S 0.17 TCGA-QG-A5Z2-01 11 47355187 47355187 G A MYBPC3 Silent p.R1037R 0.20 TCGA-QG-A5Z2-01 11 47644256 47644256 T - MTCH2 Frame_Shift_Del p.E275Rfs*4 0.14 TCGA-QG-A5Z2-01 11 47736182 47736182 C T AGBL2 Silent p.T7T 0.30 TCGA-QG-A5Z2-01 11 51515552 51515552 C A OR4C46 Missense_Mutation p.L91I 0.06 deleterious_low_confidence(0.04) benign(0.14) TCGA-QG-A5Z2-01 11 55062963 55062963 G A TRIM51HP RNA 0.17 TCGA-QG-A5Z2-01 11 55136264 55136264 T G OR4A15 Missense_Mutation p.V302G 0.39 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-QG-A5Z2-01 11 55541792 55541792 C T OR5D13 Silent p.S293S 0.17 TCGA-QG-A5Z2-01 11 55872869 55872869 A G OR8H2 Silent p.S117S 0.29 TCGA-QG-A5Z2-01 11 57456057 57456057 C T ZDHHC5 Missense_Mutation p.R102C 0.21 deleterious(0.04) probably_damaging(0.93) TCGA-QG-A5Z2-01 11 57472074 57472074 T C MED19 3'UTR 0.10 TCGA-QG-A5Z2-01 11 57575995 57575995 G A CTNND1 Missense_Mutation p.R742H 0.08 deleterious(0.02) benign(0.109) TCGA-QG-A5Z2-01 11 57948327 57948327 T - OR9Q1 3'UTR 0.28 TCGA-QG-A5Z2-01 11 582053 582053 T G PHRF1 Silent p.S62S 0.21 TCGA-QG-A5Z2-01 11 60899458 60899458 G - VPS37C Frame_Shift_Del p.P301Hfs*137 0.16 TCGA-QG-A5Z2-01 11 62361878 62361878 A G MTA2 Missense_Mutation p.M565T 0.29 tolerated_low_confidence(0.41) benign(0.002) TCGA-QG-A5Z2-01 11 62553792 62553792 C T TAF6L Silent p.L341L 0.08 TCGA-QG-A5Z2-01 11 63069925 63069925 A G SLC22A10 Missense_Mutation p.T399A 0.29 tolerated(0.59) benign(0.004) TCGA-QG-A5Z2-01 11 63885220 63885220 T C FLRT1 Missense_Mutation p.L494P 0.05 deleterious(0) probably_damaging(0.997) TCGA-QG-A5Z2-01 11 63964798 63964798 C T STIP1 Missense_Mutation p.T243I 0.07 tolerated(0.05) benign(0.017) TCGA-QG-A5Z2-01 11 64435121 64435121 G A NRXN2 Missense_Mutation p.R467C 0.27 deleterious(0) benign(0.025) TCGA-QG-A5Z2-01 11 64436059 64436059 G A NRXN2 Silent p.D405D 0.31 TCGA-QG-A5Z2-01 11 64497587 64497587 C T RASGRP2 Missense_Mutation p.V498I 0.22 tolerated(0.83) benign(0) TCGA-QG-A5Z2-01 11 64533413 64533413 C T SF1 Intron 0.12 TCGA-QG-A5Z2-01 11 64678101 64678101 C T ATG2A Missense_Mutation p.R565H 0.24 deleterious(0.01) benign(0.006) TCGA-QG-A5Z2-01 11 64812028 64812028 C T SAC3D1 Silent p.D302D 0.31 TCGA-QG-A5Z2-01 11 65004156 65004156 G A SLC22A20 Intron 0.23 TCGA-QG-A5Z2-01 11 65303600 65303600 C T SCYL1 Silent p.S521S 0.25 TCGA-QG-A5Z2-01 11 6566237 6566237 C - DNHD1 Frame_Shift_Del p.R1358Afs*11 0.19 TCGA-QG-A5Z2-01 11 66082270 66082270 G - CD248 Frame_Shift_Del p.R744Gfs*61 0.18 TCGA-QG-A5Z2-01 11 6636199 6636199 C - TPP1 Frame_Shift_Del p.I484Sfs*4 0.19 TCGA-QG-A5Z2-01 11 66455062 66455062 A G SPTBN2 Silent p.T2186T 0.07 TCGA-QG-A5Z2-01 11 66456652 66456652 C A SPTBN2 Splice_Site p.X1984_splice 0.10 TCGA-QG-A5Z2-01 11 66457293 66457293 G T SPTBN2 Missense_Mutation p.H1978N 0.18 tolerated(0.11) possibly_damaging(0.552) TCGA-QG-A5Z2-01 11 66627620 66627620 G - LRFN4 Frame_Shift_Del p.V623* 0.28 TCGA-QG-A5Z2-01 11 67077537 67077537 C T SSH3 Silent p.S470S 0.11 TCGA-QG-A5Z2-01 11 67174336 67174336 G A TBC1D10C Silent p.L229L 0.16 TCGA-QG-A5Z2-01 11 67399278 67399278 G - TBX10 Frame_Shift_Del p.P319Rfs*20 0.15 TCGA-QG-A5Z2-01 11 6913441 6913441 G A OR2D2 Silent p.C97C 0.08 TCGA-QG-A5Z2-01 11 7065038 7065038 T G NLRP14 Missense_Mutation p.F594C 0.08 deleterious(0) probably_damaging(0.969) TCGA-QG-A5Z2-01 11 71809853 71809853 C T LAMTOR1 Silent p.E80E 0.33 TCGA-QG-A5Z2-01 11 71819082 71819082 C T LRTOMT Missense_Mutation p.R158C 0.29 deleterious(0.04) probably_damaging(0.91) TCGA-QG-A5Z2-01 11 71847054 71847054 C T FOLR3 Missense_Mutation p.A19V 0.20 tolerated(0.24) unknown(0) TCGA-QG-A5Z2-01 11 71946778 71946778 C T INPPL1 Nonsense_Mutation p.R907* 0.32 TCGA-QG-A5Z2-01 11 721683 721683 C T EPS8L2 Missense_Mutation p.A296V 0.08 deleterious(0.01) benign(0.063) TCGA-QG-A5Z2-01 11 72470300 72470300 C T STARD10 Missense_Mutation p.A112T 0.25 tolerated(0.08) possibly_damaging(0.701) TCGA-QG-A5Z2-01 11 74554912 74554913 TG - XRRA1 Frame_Shift_Del p.T704Rfs*62 0.09 TCGA-QG-A5Z2-01 11 78380424 78380424 C A TENM4 Missense_Mutation p.K2322N 0.20 deleterious(0) benign(0.088) TCGA-QG-A5Z2-01 11 82877219 82877219 A - PCF11 Frame_Shift_Del p.K429Rfs*7 0.22 TCGA-QG-A5Z2-01 11 83195197 83195197 A T DLG2 Missense_Mutation p.S756R 0.25 tolerated(0.3) benign(0.375) TCGA-QG-A5Z2-01 11 84027866 84027866 A G DLG2 Intron 0.23 TCGA-QG-A5Z2-01 11 8704297 8704298 - C RPL27A 5'UTR 0.19 TCGA-QG-A5Z2-01 11 88911520 88911520 A T TYR Missense_Mutation p.K133N 0.21 tolerated(0.09) possibly_damaging(0.58) TCGA-QG-A5Z2-01 11 92531828 92531828 T G FAT3 Missense_Mutation p.F1883L 0.32 benign(0.147) TCGA-QG-A5Z2-01 11 92887294 92887294 G A SLC36A4 Missense_Mutation p.S396F 0.13 tolerated(0.27) benign(0.014) TCGA-QG-A5Z2-01 11 93836173 93836173 T C HEPHL1 Missense_Mutation p.V890A 0.18 tolerated(0.11) benign(0.032) TCGA-QG-A5Z2-01 11 94134297 94134297 C T GPR83 Silent p.S39S 0.30 TCGA-QG-A5Z2-01 11 94279705 94279705 C T FUT4 3'UTR 0.32 TCGA-QG-A5Z2-01 11 94730667 94730667 A C KDM4D Missense_Mutation p.H44P 0.21 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 11 9829658 9829658 T - SBF2 Frame_Shift_Del p.E1445Sfs*15 0.08 TCGA-QG-A5Z2-01 12 10332199 10332199 C T TMEM52B Missense_Mutation p.R4W 0.14 tolerated_low_confidence(0.16) benign(0.001) TCGA-QG-A5Z2-01 12 104084234 104084234 C T STAB2 Missense_Mutation p.A1072V 0.06 tolerated(0.09) benign(0.446) TCGA-QG-A5Z2-01 12 104129268 104129268 G T STAB2 Splice_Site p.X1821_splice 0.26 TCGA-QG-A5Z2-01 12 10774561 10774561 C T STYK1 Silent p.P326P 0.22 TCGA-QG-A5Z2-01 12 108169097 108169097 C - ASCL4 Frame_Shift_Del p.L37Sfs*53 0.20 TCGA-QG-A5Z2-01 12 10962498 10962498 C T TAS2R9 Silent p.L59L 0.23 TCGA-QG-A5Z2-01 12 110028621 110028621 C T MVK Silent p.R241R 0.09 TCGA-QG-A5Z2-01 12 110983690 110983690 G A PPTC7 Silent p.S199S 0.09 TCGA-QG-A5Z2-01 12 112608969 112608969 T C HECTD4 Missense_Mutation p.T3816A 0.07 benign(0.156) TCGA-QG-A5Z2-01 12 112623045 112623045 G A HECTD4 Missense_Mutation p.A3096V 0.13 benign(0.008) TCGA-QG-A5Z2-01 12 113770678 113770678 G A SLC8B1 Silent p.A2A 0.22 TCGA-QG-A5Z2-01 12 113871952 113871952 C T SDSL Missense_Mutation p.A123V 0.14 deleterious(0) probably_damaging(0.944) TCGA-QG-A5Z2-01 12 120221850 120221850 C T CIT Silent p.E469E 0.24 TCGA-QG-A5Z2-01 12 121698206 121698206 A G CAMKK2 Intron 0.14 TCGA-QG-A5Z2-01 12 122012473 122012473 G A KDM2B Nonsense_Mutation p.R126* 0.16 TCGA-QG-A5Z2-01 12 122750935 122750935 G A VPS33A Silent p.Y7Y 0.17 TCGA-QG-A5Z2-01 12 124268652 124268652 C T DNAH10 Silent p.T325T 0.24 TCGA-QG-A5Z2-01 12 124915272 124915272 C T NCOR2 Missense_Mutation p.R315H 0.09 unknown(0) TCGA-QG-A5Z2-01 12 129190297 129190297 C T TMEM132C Silent p.Y928Y 0.06 TCGA-QG-A5Z2-01 12 129278749 129278749 T C SLC15A4 Missense_Mutation p.R576G 0.14 tolerated_low_confidence(0.09) benign(0.024) TCGA-QG-A5Z2-01 12 13061750 13061750 G A GPRC5A Silent p.A189A 0.13 TCGA-QG-A5Z2-01 12 132416777 132416777 G A PUS1 Missense_Mutation p.V121I 0.09 tolerated(0.18) benign(0.044) TCGA-QG-A5Z2-01 12 132426132 132426132 G A PUS1 Silent p.A280A 0.06 TCGA-QG-A5Z2-01 12 132471081 132471081 C A EP400 Missense_Mutation p.P651H 0.26 unknown(0) TCGA-QG-A5Z2-01 12 132527916 132527916 C A EP400 Missense_Mutation p.P2092Q 0.26 unknown(0) TCGA-QG-A5Z2-01 12 132629430 132629430 T C NOC4L Missense_Mutation p.V50A 0.19 tolerated(0.12) benign(0.019) TCGA-QG-A5Z2-01 12 133306512 133306512 G A ANKLE2 Missense_Mutation p.R746C 0.12 deleterious(0.03) benign(0.247) TCGA-QG-A5Z2-01 12 133502365 133502365 C T ZNF605 Missense_Mutation p.C538Y 0.10 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 12 13716971 13716971 G A GRIN2B Silent p.T1067T 0.09 TCGA-QG-A5Z2-01 12 19427545 19427545 A - PLEKHA5 Frame_Shift_Del p.N316Tfs*4 0.12 TCGA-QG-A5Z2-01 12 20522509 20522509 G A PDE3A Silent p.A97A 0.07 TCGA-QG-A5Z2-01 12 21428275 21428275 A - SLCO1A2 Intron 0.22 TCGA-QG-A5Z2-01 12 27543146 27543146 G T ARNTL2 Missense_Mutation p.G298V 0.08 tolerated(0.19) benign(0.024) TCGA-QG-A5Z2-01 12 31132578 31132578 C T TSPAN11 Silent p.T143T 0.09 TCGA-QG-A5Z2-01 12 31435566 31435609 AGAGGGTCAGTTTGTAGCTTTGTGGTTTTTCAAAATTCAGATAT GAGGGTCAGTTTGTAGCTTTGTGGTTTTTCAAAATTCAGATA FAM60A 3'UTR 0.14 TCGA-QG-A5Z2-01 12 3692310 3692310 C T PRMT8 Silent p.H305H 0.31 TCGA-QG-A5Z2-01 12 39096704 39096704 C T CPNE8 Missense_Mutation p.V312M 0.05 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 12 40687370 40687370 A - LRRK2 Frame_Shift_Del p.K906Rfs*8 0.23 TCGA-QG-A5Z2-01 12 49437654 49437654 C T KMT2D Silent p.L1772L 0.28 TCGA-QG-A5Z2-01 12 50747910 50747910 T G FAM186A Missense_Mutation p.E902A 0.10 deleterious(0.05) benign(0.373) TCGA-QG-A5Z2-01 12 52282494 52282494 G - ANKRD33 Frame_Shift_Del p.A98Pfs*61 0.21 TCGA-QG-A5Z2-01 12 52681473 52681473 G A KRT81 Silent p.H311H 0.16 TCGA-QG-A5Z2-01 12 52772042 52772042 G T KRT84 Missense_Mutation p.L527M 0.08 tolerated(0.23) benign(0.215) TCGA-QG-A5Z2-01 12 52776234 52776234 G A KRT84 Missense_Mutation p.T300M 0.05 tolerated(0.24) possibly_damaging(0.88) TCGA-QG-A5Z2-01 12 53668763 53668763 G A ESPL1 Missense_Mutation p.A557T 0.15 tolerated(0.23) benign(0.033) TCGA-QG-A5Z2-01 12 54577576 54577576 G T SMUG1 Missense_Mutation p.P50H 0.17 deleterious(0.01) possibly_damaging(0.861) TCGA-QG-A5Z2-01 12 5603725 5603725 G A NTF3 Silent p.P128P 0.25 TCGA-QG-A5Z2-01 12 56296076 56296076 A G WIBG Silent p.P65P 0.26 TCGA-QG-A5Z2-01 12 56733930 56733930 G A IL23A 3'UTR 0.20 TCGA-QG-A5Z2-01 12 5744362 5744362 A C ANO2 Missense_Mutation p.L591R 0.17 deleterious(0) probably_damaging(0.979) TCGA-QG-A5Z2-01 12 57556751 57556751 G T LRP1 Missense_Mutation p.G839C 0.52 possibly_damaging(0.554) TCGA-QG-A5Z2-01 12 57922150 57922150 G - MBD6 Frame_Shift_Del p.G877Afs*69 0.45 TCGA-QG-A5Z2-01 12 58120847 58120847 G A AGAP2 Silent p.L1082L 0.07 TCGA-QG-A5Z2-01 12 6347088 6347089 - T CD9 3'UTR 0.16 TCGA-QG-A5Z2-01 12 6637242 6637242 A G NCAPD2 Missense_Mutation p.K1043R 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-QG-A5Z2-01 12 6729913 6729913 G A LPAR5 Missense_Mutation p.R168W 0.25 deleterious(0.02) possibly_damaging(0.809) TCGA-QG-A5Z2-01 12 6973278 6973278 C - USP5 Frame_Shift_Del p.P723Lfs*6 0.20 TCGA-QG-A5Z2-01 12 7188268 7188268 C A C1R Missense_Mutation p.E510D 0.05 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 12 72083393 72083393 G A TMEM19 Silent p.P51P 0.28 TCGA-QG-A5Z2-01 12 7531864 7531864 C T CD163L1 Missense_Mutation p.G694D 0.26 tolerated(0.54) probably_damaging(1) TCGA-QG-A5Z2-01 12 75669981 75669981 C T CAPS2 3'UTR 0.23 TCGA-QG-A5Z2-01 12 75692739 75692739 G A CAPS2 Missense_Mutation p.R307C 0.35 deleterious(0) benign(0.194) TCGA-QG-A5Z2-01 12 7805268 7805268 A T APOBEC1 Missense_Mutation p.F70I 0.41 tolerated(0.24) benign(0.03) TCGA-QG-A5Z2-01 12 80201041 80201042 - T PPP1R12A Frame_Shift_Ins p.N540Kfs*2 0.30 TCGA-QG-A5Z2-01 12 91347506 91347506 C T CCER1 Silent p.E338E 0.21 TCGA-QG-A5Z2-01 12 93100469 93100469 G A C12orf74 Missense_Mutation p.R21Q 0.08 tolerated(1) benign(0) TCGA-QG-A5Z2-01 12 93236300 93236300 A G EEA1 Missense_Mutation p.Y286H 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-QG-A5Z2-01 12 95694062 95694062 C T VEZT Silent p.S651S 0.26 TCGA-QG-A5Z2-01 12 96384171 96384171 G A HAL Silent p.Y285Y 0.21 TCGA-QG-A5Z2-01 13 103514618 103514618 C T BIVM-ERCC5 Silent p.N799N 0.16 TCGA-QG-A5Z2-01 13 107145544 107145544 G A EFNB2 Silent p.N282N 0.16 TCGA-QG-A5Z2-01 13 108518349 108518350 - C FAM155A Frame_Shift_Ins p.A199Gfs*29 0.24 TCGA-QG-A5Z2-01 13 108886064 108886064 C T ABHD13 3'UTR 0.11 TCGA-QG-A5Z2-01 13 111372020 111372020 C T ING1 Missense_Mutation p.A337V 0.31 tolerated(0.13) possibly_damaging(0.904) TCGA-QG-A5Z2-01 13 113143892 113143892 C T TUBGCP3 Intron 0.27 TCGA-QG-A5Z2-01 13 24233286 24233286 C - TNFRSF19 Frame_Shift_Del p.L182Cfs*129 0.23 TCGA-QG-A5Z2-01 13 25435477 25435477 T C RNF17 Silent p.P1282P 0.25 TCGA-QG-A5Z2-01 13 26788681 26788681 A C RNF6 Silent p.S446S 0.48 TCGA-QG-A5Z2-01 13 27333338 27333338 C T GPR12 Missense_Mutation p.M209I 0.09 tolerated(0.39) benign(0.002) TCGA-QG-A5Z2-01 13 32676140 32676140 C A FRY Missense_Mutation p.P104H 0.07 tolerated(0.21) benign(0.416) TCGA-QG-A5Z2-01 13 35923253 35923253 G A NBEA Missense_Mutation p.C1971Y 0.31 deleterious(0.01) possibly_damaging(0.699) TCGA-QG-A5Z2-01 13 36743178 36743178 G A SOHLH2 Missense_Mutation p.A501V 0.06 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-QG-A5Z2-01 13 41705267 41705267 T G KBTBD6 Silent p.R461R 0.33 TCGA-QG-A5Z2-01 13 42874485 42874486 - A AKAP11 Frame_Shift_Ins p.N537Kfs*2 0.21 TCGA-QG-A5Z2-01 13 42877698 42877698 T - AKAP11 Frame_Shift_Del p.F1607Sfs*48 0.09 TCGA-QG-A5Z2-01 13 46549808 46549809 CT - ZC3H13 Frame_Shift_Del p.R693Gfs*3 0.33 TCGA-QG-A5Z2-01 13 46930584 46930584 C A KIAA0226L Missense_Mutation p.G438V 0.09 deleterious(0) probably_damaging(0.988) TCGA-QG-A5Z2-01 13 50279805 50279805 C T KPNA3 Missense_Mutation p.A442T 0.34 deleterious(0.01) benign(0.377) TCGA-QG-A5Z2-01 13 52598273 52598273 G A ALG11 Missense_Mutation p.R136H 0.13 deleterious(0) benign(0.236) TCGA-QG-A5Z2-01 13 53420670 53420670 G T PCDH8 Silent p.A634A 0.19 TCGA-QG-A5Z2-01 13 58208112 58208112 G A PCDH17 Missense_Mutation p.V478M 0.34 tolerated(0.15) benign(0.066) TCGA-QG-A5Z2-01 13 61141768 61141768 G A TDRD3 Missense_Mutation p.R743Q 0.04 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 13 61986668 61986668 T C PCDH20 Missense_Mutation p.K522E 0.21 tolerated(0.29) benign(0.41) TCGA-QG-A5Z2-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.11 TCGA-QG-A5Z2-01 13 84455804 84455804 C - SLITRK1 5'UTR 0.26 TCGA-QG-A5Z2-01 13 96743245 96743245 G A HS6ST3 Silent p.A43A 0.44 TCGA-QG-A5Z2-01 14 102551312 102551312 T A HSP90AA1 Missense_Mutation p.E351D 0.24 tolerated_low_confidence(0.06) unknown(0) TCGA-QG-A5Z2-01 14 102552646 102552646 C T HSP90AA1 Missense_Mutation p.A146T 0.10 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-QG-A5Z2-01 14 103566533 103566534 - C EXOC3L4 5'UTR 0.19 TCGA-QG-A5Z2-01 14 103988701 103988701 C T CKB Missense_Mutation p.A44T 0.12 deleterious(0.03) benign(0.002) TCGA-QG-A5Z2-01 14 104638200 104638200 C A KIF26A Silent p.P418P 0.10 TCGA-QG-A5Z2-01 14 104642560 104642560 C - KIF26A Frame_Shift_Del p.P1147Lfs*101 0.10 TCGA-QG-A5Z2-01 14 105353223 105353223 C - CEP170B Frame_Shift_Del p.H885Tfs*28 0.17 TCGA-QG-A5Z2-01 14 105408234 105408234 G A AHNAK2 Silent p.A4518A 0.39 TCGA-QG-A5Z2-01 14 105408445 105408446 - C AHNAK2 Frame_Shift_Ins p.D4448Gfs*6 0.17 TCGA-QG-A5Z2-01 14 105410412 105410412 G A AHNAK2 Silent p.A3792A 0.12 TCGA-QG-A5Z2-01 14 105412999 105412999 G A AHNAK2 Missense_Mutation p.A2930V 0.33 benign(0.001) TCGA-QG-A5Z2-01 14 105617086 105617087 CA - JAG2 Frame_Shift_Del p.C486Pfs*48 0.09 TCGA-QG-A5Z2-01 14 105716134 105716134 A T BTBD6 Missense_Mutation p.S195C 0.21 deleterious(0) possibly_damaging(0.808) TCGA-QG-A5Z2-01 14 105905013 105905013 C T MTA1 Silent p.Y11Y 0.20 TCGA-QG-A5Z2-01 14 105927253 105927253 A G MTA1 Missense_Mutation p.K302R 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-QG-A5Z2-01 14 105930415 105930415 G A MTA1 Missense_Mutation p.G375S 0.08 tolerated(0.14) benign(0.005) TCGA-QG-A5Z2-01 14 21511316 21511317 - A RNASE7 Frame_Shift_Ins p.N57Kfs*3 0.13 TCGA-QG-A5Z2-01 14 21882524 21882524 C A CHD8 Missense_Mutation p.R693M 0.07 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 14 23528657 23528657 G A ACIN1 Silent p.A1242A 0.25 TCGA-QG-A5Z2-01 14 23889339 23889339 G A MYH7 Silent p.S1147S 0.23 TCGA-QG-A5Z2-01 14 23890182 23890184 CTT - MYH7 In_Frame_Del p.K1107del 0.31 TCGA-QG-A5Z2-01 14 24033066 24033066 C T AP1G2 Splice_Site p.X364_splice 0.12 TCGA-QG-A5Z2-01 14 24435558 24435558 C T DHRS4 Silent p.L200L 0.05 TCGA-QG-A5Z2-01 14 24535855 24535855 A G LRRC16B Silent p.T1224T 0.15 TCGA-QG-A5Z2-01 14 24647335 24647335 T C REC8 Silent p.R300R 0.10 TCGA-QG-A5Z2-01 14 24647341 24647341 C T REC8 Silent p.R302R 0.13 TCGA-QG-A5Z2-01 14 24788309 24788309 C T ADCY4 Missense_Mutation p.R984Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 14 24901711 24901711 G A KHNYN Missense_Mutation p.R415H 0.20 deleterious(0) probably_damaging(0.915) TCGA-QG-A5Z2-01 14 33292632 33292632 G C AKAP6 Missense_Mutation p.E1871D 0.36 tolerated(0.11) benign(0.015) TCGA-QG-A5Z2-01 14 36989307 36989307 G A NKX2-1 Missense_Mutation p.R10W 0.13 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-QG-A5Z2-01 14 53124682 53124682 A G ERO1L Missense_Mutation p.L254P 0.12 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 14 53529816 53529816 G A DDHD1 Silent p.S537S 0.17 TCGA-QG-A5Z2-01 14 61924008 61924008 C T PRKCH Nonsense_Mutation p.R359* 0.27 TCGA-QG-A5Z2-01 14 64484387 64484387 A - SYNE2 Frame_Shift_Del p.N1656Mfs*19 0.12 TCGA-QG-A5Z2-01 14 65220494 65220494 C T SPTB Silent p.T2121T 0.09 TCGA-QG-A5Z2-01 14 65259777 65259779 CTC - SPTB In_Frame_Del p.E868del 0.14 TCGA-QG-A5Z2-01 14 65271701 65271701 G A SPTB Missense_Mutation p.R86C 0.19 deleterious(0) probably_damaging(0.969) TCGA-QG-A5Z2-01 14 67940556 67940556 C T TMEM229B Missense_Mutation p.A29T 0.07 deleterious(0) probably_damaging(0.976) TCGA-QG-A5Z2-01 14 71455354 71455354 G A PCNX Silent p.R794R 0.09 TCGA-QG-A5Z2-01 14 73735359 73735359 T C PAPLN Missense_Mutation p.S1172P 0.13 deleterious(0) probably_damaging(0.98) TCGA-QG-A5Z2-01 14 73753945 73753945 A G NUMB Silent p.C176C 0.18 TCGA-QG-A5Z2-01 14 74179475 74179475 G A PNMA1 Missense_Mutation p.R290C 0.06 deleterious(0) probably_damaging(0.984) TCGA-QG-A5Z2-01 14 74411230 74411231 - C FAM161B Frame_Shift_Ins p.I308Dfs*38 0.12 TCGA-QG-A5Z2-01 14 74411270 74411270 T G FAM161B Missense_Mutation p.Q294H 0.34 tolerated(0.37) benign(0.017) TCGA-QG-A5Z2-01 14 75265410 75265410 G A YLPM1 Missense_Mutation p.R1137Q 0.08 benign(0.053) TCGA-QG-A5Z2-01 14 75409382 75409382 C T PGF 3'UTR 0.18 TCGA-QG-A5Z2-01 14 76928974 76928974 A G ESRRB Missense_Mutation p.K162E 0.09 deleterious(0.02) probably_damaging(0.936) TCGA-QG-A5Z2-01 14 80328313 80328313 C T NRXN3 3'UTR 0.19 TCGA-QG-A5Z2-01 14 81736950 81736950 G - STON2 Intron 0.19 TCGA-QG-A5Z2-01 14 92465686 92465686 C G TRIP11 Missense_Mutation p.R1597P 0.32 deleterious(0) probably_damaging(0.91) TCGA-QG-A5Z2-01 14 93176164 93176164 A G LGMN Silent p.S291S 0.33 TCGA-QG-A5Z2-01 14 94756674 94756674 A C SERPINA10 Missense_Mutation p.L86R 0.27 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 14 95670080 95670080 C A CLMN Missense_Mutation p.D536Y 0.25 deleterious_low_confidence(0) benign(0.425) TCGA-QG-A5Z2-01 15 100871196 100871196 G T ADAMTS17 Missense_Mutation p.P172T 0.25 tolerated(0.63) possibly_damaging(0.538) TCGA-QG-A5Z2-01 15 22368774 22368774 G A OR4M2 Missense_Mutation p.A67T 0.07 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 15 23049113 23049113 C T NIPA1 Missense_Mutation p.V236M 0.28 deleterious(0.03) probably_damaging(0.928) TCGA-QG-A5Z2-01 15 24926125 24926125 G A NPAP1 3'UTR 0.33 TCGA-QG-A5Z2-01 15 24927892 24927892 A - NPAP1 3'UTR 0.33 TCGA-QG-A5Z2-01 15 27777806 27777806 G A GABRG3 Missense_Mutation p.V395I 0.30 tolerated(0.43) benign(0.054) TCGA-QG-A5Z2-01 15 28459322 28459322 G A HERC2 Missense_Mutation p.T2152M 0.07 possibly_damaging(0.636) TCGA-QG-A5Z2-01 15 28478681 28478681 C T HERC2 Missense_Mutation p.A1460T 0.13 benign(0.006) TCGA-QG-A5Z2-01 15 28520108 28520108 C G HERC2 Missense_Mutation p.G196R 0.31 probably_damaging(0.982) TCGA-QG-A5Z2-01 15 29400547 29400547 G A APBA2 Silent p.R664R 0.10 TCGA-QG-A5Z2-01 15 32920978 32920978 T G ARHGAP11A Silent p.S304S 0.35 TCGA-QG-A5Z2-01 15 32928854 32928855 - A ARHGAP11A Frame_Shift_Ins p.L629Ifs*3 0.17 TCGA-QG-A5Z2-01 15 34652406 34652406 G A LPCAT4 Missense_Mutation p.T383I 0.20 tolerated(0.18) benign(0.019) TCGA-QG-A5Z2-01 15 39880419 39880422 AGTA - THBS1 Splice_Site p.X491_splice 0.19 TCGA-QG-A5Z2-01 15 40590514 40590514 G A PLCB2 Silent p.C355C 0.15 TCGA-QG-A5Z2-01 15 41796275 41796275 G T LTK Silent p.P838P 0.38 TCGA-QG-A5Z2-01 15 42114271 42114271 C T MAPKBP1 Silent p.S1004S 0.12 TCGA-QG-A5Z2-01 15 42133436 42133436 C T PLA2G4B Missense_Mutation p.R365C 0.22 tolerated(0.37) benign(0.001) TCGA-QG-A5Z2-01 15 42293414 42293414 C T PLA2G4E Missense_Mutation p.R205Q 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-QG-A5Z2-01 15 43574198 43574198 C T TGM7 Missense_Mutation p.E399K 0.11 tolerated(0.07) probably_damaging(0.945) TCGA-QG-A5Z2-01 15 43818982 43818982 C T MAP1A Missense_Mutation p.R1771C 0.12 probably_damaging(0.935) TCGA-QG-A5Z2-01 15 43903347 43903347 C T STRC Missense_Mutation p.R1102Q 0.12 tolerated(0.21) benign(0.015) TCGA-QG-A5Z2-01 15 43927941 43927941 G A CATSPER2 Missense_Mutation p.R369W 0.09 tolerated(0.07) probably_damaging(0.952) TCGA-QG-A5Z2-01 15 44092634 44092635 - A HYPK Intron 0.24 TCGA-QG-A5Z2-01 15 45415121 45415121 A C DUOXA1 Missense_Mutation p.F31C 0.04 deleterious(0.01) possibly_damaging(0.714) TCGA-QG-A5Z2-01 15 49575791 49575791 G T GALK2 Missense_Mutation p.R211M 0.14 deleterious(0) probably_damaging(0.915) TCGA-QG-A5Z2-01 15 49924465 49924465 C T DTWD1 Missense_Mutation p.P125L 0.24 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 15 51514405 51514405 A - CYP19A1 Intron 0.17 TCGA-QG-A5Z2-01 15 52676431 52676431 C T MYO5A Missense_Mutation p.R614Q 0.29 tolerated(0.49) possibly_damaging(0.756) TCGA-QG-A5Z2-01 15 56958693 56958693 C T ZNF280D Missense_Mutation p.E632K 0.12 tolerated(0.42) possibly_damaging(0.699) TCGA-QG-A5Z2-01 15 56958908 56958908 T - ZNF280D Frame_Shift_Del p.S608Vfs*7 0.22 TCGA-QG-A5Z2-01 15 57545514 57545514 C T TCF12 Missense_Mutation p.R439W 0.15 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 15 58933010 58933010 G A ADAM10 Silent p.G326G 0.12 TCGA-QG-A5Z2-01 15 64429954 64429954 G A SNX1 Intron 0.24 TCGA-QG-A5Z2-01 15 67473672 67473672 C T SMAD3 Missense_Mutation p.S251L 0.29 deleterious(0.01) probably_damaging(0.912) TCGA-QG-A5Z2-01 15 73581580 73581580 G A NEO1 Splice_Site p.X1248_splice 0.26 TCGA-QG-A5Z2-01 15 74290723 74290723 C T PML Missense_Mutation p.R170C 0.31 tolerated(0.05) probably_damaging(0.998) TCGA-QG-A5Z2-01 15 74467462 74467462 C T ISLR Missense_Mutation p.T88M 0.25 deleterious(0.02) benign(0.01) TCGA-QG-A5Z2-01 15 74836313 74836313 G A ARID3B Silent p.Q12Q 0.28 TCGA-QG-A5Z2-01 15 75688716 75688716 C - SIN3A Frame_Shift_Del p.G659Afs*26 0.12 TCGA-QG-A5Z2-01 15 75702223 75702223 C T SIN3A Missense_Mutation p.G424D 0.08 deleterious(0.04) probably_damaging(0.973) TCGA-QG-A5Z2-01 15 78582380 78582380 G A WDR61 Silent p.V127V 0.31 TCGA-QG-A5Z2-01 15 79264261 79264261 G A RASGRF1 Nonsense_Mutation p.R1226* 0.08 TCGA-QG-A5Z2-01 15 81188314 81188314 G A KIAA1199 Missense_Mutation p.A442T 0.07 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 15 84581992 84581992 G A ADAMTSL3 Missense_Mutation p.E617K 0.22 deleterious(0.01) possibly_damaging(0.869) TCGA-QG-A5Z2-01 15 85098241 85098241 G A UBE2Q2P1 RNA 0.23 TCGA-QG-A5Z2-01 15 89003057 89003057 G A MRPL46 Silent p.P209P 0.14 TCGA-QG-A5Z2-01 15 90347580 90347580 G T ANPEP Silent p.T361T 0.10 TCGA-QG-A5Z2-01 15 90771245 90771245 C T SEMA4B Silent p.P628P 0.20 TCGA-QG-A5Z2-01 15 90772383 90772383 C T SEMA4B 3'UTR 0.33 TCGA-QG-A5Z2-01 15 91474665 91474665 C T HDDC3 3'UTR 0.06 TCGA-QG-A5Z2-01 16 11001999 11001999 C T CIITA Missense_Mutation p.R884C 0.26 tolerated(0.18) benign(0) TCGA-QG-A5Z2-01 16 11367369 11367369 G A PRM3 Silent p.H28H 0.25 TCGA-QG-A5Z2-01 16 11772005 11772005 C T SNN 3'UTR 0.23 TCGA-QG-A5Z2-01 16 11861327 11861327 T - ZC3H7A Frame_Shift_Del p.I490Yfs*41 0.10 TCGA-QG-A5Z2-01 16 12136874 12136874 T C SNX29 Missense_Mutation p.L123P 0.10 deleterious(0) probably_damaging(0.989) TCGA-QG-A5Z2-01 16 1270496 1270496 C - CACNA1H Frame_Shift_Del p.C2191Afs*26 0.21 TCGA-QG-A5Z2-01 16 129683 129683 G A MPG Missense_Mutation p.R100Q 0.07 tolerated(0.24) benign(0.075) TCGA-QG-A5Z2-01 16 1470412 1470412 C A C16orf91 Missense_Mutation p.K235N 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.882) TCGA-QG-A5Z2-01 16 1705962 1705962 G A CRAMP1L Missense_Mutation p.E402K 0.07 deleterious(0.01) possibly_damaging(0.769) TCGA-QG-A5Z2-01 16 1841152 1841152 C T IGFALS Missense_Mutation p.V461M 0.30 deleterious(0.05) benign(0.067) TCGA-QG-A5Z2-01 16 19132401 19132401 C T ITPRIPL2 3'UTR 0.16 TCGA-QG-A5Z2-01 16 21156683 21156683 C T DNAH3 Silent p.T89T 0.31 TCGA-QG-A5Z2-01 16 2164302 2164302 C T PKD1 Missense_Mutation p.V908M 0.09 benign(0.017) TCGA-QG-A5Z2-01 16 21663853 21663853 C A IGSF6 Missense_Mutation p.G23C 0.23 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 16 22269931 22269931 C T EEF2K Silent p.D382D 0.16 TCGA-QG-A5Z2-01 16 2374530 2374530 G A ABCA3 Missense_Mutation p.R108C 0.33 deleterious(0.02) possibly_damaging(0.846) TCGA-QG-A5Z2-01 16 24942180 24942180 G - ARHGAP17 Frame_Shift_Del p.Q814Nfs*23 0.26 TCGA-QG-A5Z2-01 16 27549589 27549589 G A GTF3C1 Missense_Mutation p.P174S 0.08 tolerated(0.21) probably_damaging(0.999) TCGA-QG-A5Z2-01 16 28845955 28845955 C T ATXN2L Missense_Mutation p.P792S 0.26 deleterious(0) possibly_damaging(0.647) TCGA-QG-A5Z2-01 16 28855076 28855076 A T TUFM Missense_Mutation p.I392N 0.11 deleterious(0) benign(0.294) TCGA-QG-A5Z2-01 16 30016554 30016554 C - INO80E Frame_Shift_Del p.D178Tfs*8 0.29 TCGA-QG-A5Z2-01 16 30038148 30038148 C T FAM57B Missense_Mutation p.A76T 0.08 tolerated(0.41) benign(0.095) TCGA-QG-A5Z2-01 16 3026905 3026905 C - PKMYT1 Frame_Shift_Del p.L47Sfs*92 0.08 TCGA-QG-A5Z2-01 16 30455863 30455863 C T SEPHS2 Missense_Mutation p.G396R 0.08 probably_damaging(0.995) TCGA-QG-A5Z2-01 16 30615688 30615688 C T ZNF689 Missense_Mutation p.R467H 0.05 deleterious(0.03) possibly_damaging(0.841) TCGA-QG-A5Z2-01 16 30734053 30734053 G A SRCAP Silent p.P1292P 0.24 TCGA-QG-A5Z2-01 16 30744925 30744925 C T SRCAP Silent p.A2100A 0.06 TCGA-QG-A5Z2-01 16 30793933 30793933 G A ZNF629 Silent p.L572L 0.26 TCGA-QG-A5Z2-01 16 31044759 31044759 C G STX4 5'Flank 0.07 TCGA-QG-A5Z2-01 16 31090341 31090341 A G ZNF646 Missense_Mutation p.H899R 0.15 deleterious(0) probably_damaging(0.991) TCGA-QG-A5Z2-01 16 3724450 3724450 C A TRAP1 Nonsense_Mutation p.E312* 0.30 TCGA-QG-A5Z2-01 16 3777959 3777959 C T CREBBP Silent p.P2363P 0.10 TCGA-QG-A5Z2-01 16 4165000 4165000 G - ADCY9 Frame_Shift_Del p.A149Rfs*38 0.10 TCGA-QG-A5Z2-01 16 4484420 4484420 T - DNAJA3 Frame_Shift_Del p.F83Sfs*16 0.20 TCGA-QG-A5Z2-01 16 49315137 49315137 G A CBLN1 Silent p.R80R 0.25 TCGA-QG-A5Z2-01 16 50701845 50701845 G - SNX20 3'Flank 0.28 TCGA-QG-A5Z2-01 16 5128781 5128781 C T ALG1 Missense_Mutation p.T255M 0.15 tolerated(0.27) benign(0.012) TCGA-QG-A5Z2-01 16 5140463 5140463 G A FAM86A Missense_Mutation p.A149V 0.16 deleterious(0.02) benign(0.02) TCGA-QG-A5Z2-01 16 53730177 53730177 C T RPGRIP1L Missense_Mutation p.R39H 0.23 deleterious(0.03) benign(0.047) TCGA-QG-A5Z2-01 16 57003430 57003430 G A CETP Nonsense_Mutation p.W122* 0.36 TCGA-QG-A5Z2-01 16 57449886 57449886 C T CCL17 3'UTR 0.28 TCGA-QG-A5Z2-01 16 57918319 57918319 C T CNGB1 Missense_Mutation p.A1169T 0.39 tolerated(0.32) benign(0.028) TCGA-QG-A5Z2-01 16 58612691 58612691 C T CNOT1 Missense_Mutation p.R499H 0.07 deleterious(0.03) probably_damaging(0.977) TCGA-QG-A5Z2-01 16 61687382 61687382 T C CDH8 3'UTR 0.32 TCGA-QG-A5Z2-01 16 61935343 61935344 - T CDH8 Frame_Shift_Ins p.I96Nfs*8 0.22 TCGA-QG-A5Z2-01 16 65038914 65038914 C T CDH11 5'UTR 0.32 TCGA-QG-A5Z2-01 16 67354726 67354726 C T KCTD19 Nonsense_Mutation p.W22* 0.28 TCGA-QG-A5Z2-01 16 69832690 69832690 G A WWP2 Missense_Mutation p.R59H 0.08 tolerated(0.58) benign(0.403) TCGA-QG-A5Z2-01 16 70417135 70417135 G T ST3GAL2 Silent p.T239T 0.12 TCGA-QG-A5Z2-01 16 70508077 70508077 C T FUK Missense_Mutation p.A608V 0.08 deleterious(0) possibly_damaging(0.753) TCGA-QG-A5Z2-01 16 70508128 70508128 G A FUK Missense_Mutation p.R625Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 16 71772991 71772991 T C AP1G1 Missense_Mutation p.T711A 0.11 tolerated(0.16) benign(0.014) TCGA-QG-A5Z2-01 16 72048469 72048469 G A DHODH Missense_Mutation p.G111D 0.16 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 16 72137975 72137975 A C DHX38 Missense_Mutation p.D652A 0.11 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 16 726817 726817 A G RHBDL1 Missense_Mutation p.E181G 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-QG-A5Z2-01 16 72822700 72822700 C T ZFHX3 Missense_Mutation p.V3159I 0.12 unknown(0) TCGA-QG-A5Z2-01 16 72828914 72828914 G A ZFHX3 Missense_Mutation p.A2556V 0.34 unknown(0) TCGA-QG-A5Z2-01 16 72829201 72829201 G A ZFHX3 Silent p.P2460P 0.21 TCGA-QG-A5Z2-01 16 74486141 74486141 C T GLG1 Intron 0.27 TCGA-QG-A5Z2-01 16 75269521 75269521 G A BCAR1 Missense_Mutation p.R472C 0.20 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 16 75338946 75338946 G A CFDP1 Missense_Mutation p.A262V 0.27 deleterious(0) probably_damaging(0.967) TCGA-QG-A5Z2-01 16 76482697 76482697 T C CNTNAP4 Missense_Mutation p.V234A 0.06 tolerated(0.74) benign(0.005) TCGA-QG-A5Z2-01 16 77775743 77775744 - A NUDT7 Frame_Shift_Ins p.P208Tfs*4 0.27 TCGA-QG-A5Z2-01 16 77822786 77822786 C T VAT1L Silent p.G69G 0.22 TCGA-QG-A5Z2-01 16 81142205 81142205 T C RNU6-1191P 5'Flank 0.10 TCGA-QG-A5Z2-01 16 81929516 81929516 G A PLCG2 Missense_Mutation p.A393T 0.26 deleterious(0) possibly_damaging(0.826) TCGA-QG-A5Z2-01 16 85143894 85143894 G A FAM92B Missense_Mutation p.R65W 0.26 deleterious(0) probably_damaging(0.989) TCGA-QG-A5Z2-01 16 87764241 87764241 G A KLHDC4 Silent p.G172G 0.08 TCGA-QG-A5Z2-01 16 88052062 88052062 C T BANP Silent p.G220G 0.08 TCGA-QG-A5Z2-01 16 88932830 88932830 T C PABPN1L Missense_Mutation p.D62G 0.09 tolerated(0.09) benign(0.001) TCGA-QG-A5Z2-01 16 89355012 89355012 G A ANKRD11 Missense_Mutation p.A223V 0.09 probably_damaging(0.983) TCGA-QG-A5Z2-01 16 89653146 89653146 C T CPNE7 Silent p.V358V 0.09 TCGA-QG-A5Z2-01 16 90001343 90001343 C T TUBB3 Missense_Mutation p.R162C 0.26 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-QG-A5Z2-01 16 90160457 90160457 C T TUBB8P7 Intron 0.12 TCGA-QG-A5Z2-01 17 10222452 10222452 C T MYH13 Silent p.T1131T 0.08 TCGA-QG-A5Z2-01 17 10310273 10310273 C T MYH8 Silent p.T663T 0.06 TCGA-QG-A5Z2-01 17 10312857 10312857 C T MYH8 Missense_Mutation p.A546T 0.06 deleterious(0) probably_damaging(0.934) TCGA-QG-A5Z2-01 17 10404812 10404812 C A MYH1 Missense_Mutation p.R1118L 0.27 deleterious(0) possibly_damaging(0.65) TCGA-QG-A5Z2-01 17 10408602 10408602 A C MYH1 Silent p.A771A 0.21 TCGA-QG-A5Z2-01 17 10608374 10608374 A G ADPRM Missense_Mutation p.Y44C 0.11 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 17 11711152 11711152 A G DNAH9 Missense_Mutation p.S2842G 0.18 benign(0.329) TCGA-QG-A5Z2-01 17 14063193 14063194 - T COX10 Frame_Shift_Ins p.E211* 0.17 TCGA-QG-A5Z2-01 17 15968867 15968867 C T NCOR1 Missense_Mutation p.R1628H 0.05 probably_damaging(0.996) TCGA-QG-A5Z2-01 17 16285286 16285286 C T UBB Missense_Mutation p.T22I 0.33 deleterious(0.01) benign(0.361) TCGA-QG-A5Z2-01 17 16630917 16630917 T C CCDC144A Silent p.C656C 0.19 TCGA-QG-A5Z2-01 17 18052083 18052083 C T MYO15A Missense_Mutation p.A2258V 0.10 unknown(0) TCGA-QG-A5Z2-01 17 18539756 18539756 G T TBC1D28 3'UTR 0.38 TCGA-QG-A5Z2-01 17 18668160 18668160 A T FBXW10 Missense_Mutation p.R513S 0.27 deleterious(0.01) benign(0.426) TCGA-QG-A5Z2-01 17 18881853 18881853 G A FAM83G Silent p.L376L 0.24 TCGA-QG-A5Z2-01 17 2089960 2089960 G A SMG6 Missense_Mutation p.S1051L 0.13 tolerated(0.72) benign(0.001) TCGA-QG-A5Z2-01 17 2203279 2203279 C T SMG6 Silent p.T256T 0.11 TCGA-QG-A5Z2-01 17 2577395 2577395 G A PAFAH1B1 Missense_Mutation p.R238H 0.04 deleterious(0.02) possibly_damaging(0.853) TCGA-QG-A5Z2-01 17 2598522 2598522 G A CLUH Missense_Mutation p.T827M 0.20 deleterious(0.03) possibly_damaging(0.696) TCGA-QG-A5Z2-01 17 26106033 26106033 C T NOS2 Missense_Mutation p.V352M 0.06 deleterious(0) probably_damaging(0.91) TCGA-QG-A5Z2-01 17 27003311 27003311 C T SUPT6H Missense_Mutation p.R254C 0.16 deleterious(0) probably_damaging(0.927) TCGA-QG-A5Z2-01 17 27935228 27935228 G A ANKRD13B Missense_Mutation p.V131M 0.12 tolerated(0.09) possibly_damaging(0.814) TCGA-QG-A5Z2-01 17 2867232 2867232 G A RAP1GAP2 Missense_Mutation p.G121D 0.06 tolerated(0.07) benign(0.04) TCGA-QG-A5Z2-01 17 29556292 29556292 G A NF1 Missense_Mutation p.A887T 0.06 tolerated(0.54) benign(0) TCGA-QG-A5Z2-01 17 34869495 34869495 G A MYO19 Missense_Mutation p.P265L 0.22 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 17 35608983 35608983 C G ACACA Missense_Mutation p.A677P 0.38 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 17 3563926 3563926 C T CTNS Silent p.R367R 0.18 TCGA-QG-A5Z2-01 17 3599313 3599313 C T P2RX5 5'UTR 0.22 TCGA-QG-A5Z2-01 17 3629005 3629005 T - GSG2 Frame_Shift_Del p.F594Lfs*19 0.15 TCGA-QG-A5Z2-01 17 37566713 37566713 C T MED1 Silent p.E587E 0.27 TCGA-QG-A5Z2-01 17 37922097 37922097 C T IKZF3 Silent p.R492R 0.05 TCGA-QG-A5Z2-01 17 38904473 38904475 ATA - KRT25 3'UTR 0.23 TCGA-QG-A5Z2-01 17 39241346 39241346 T A KRTAP4-7 3'UTR 0.28 TCGA-QG-A5Z2-01 17 39525984 39525984 G T KRT33B Missense_Mutation p.L7M 0.06 tolerated_low_confidence(0.12) probably_damaging(0.998) TCGA-QG-A5Z2-01 17 40948836 40948836 A G WNK4 3'UTR 0.18 TCGA-QG-A5Z2-01 17 42249544 42249544 C T ASB16 Silent p.R144R 0.25 TCGA-QG-A5Z2-01 17 42474940 42474940 G A GPATCH8 Missense_Mutation p.T1502M 0.09 deleterious_low_confidence(0) unknown(0) TCGA-QG-A5Z2-01 17 42477686 42477686 T A GPATCH8 Nonsense_Mutation p.K587* 0.31 TCGA-QG-A5Z2-01 17 45351825 45351825 G A ITGB3 Silent p.Q40Q 0.10 TCGA-QG-A5Z2-01 17 45451978 45451978 A - EFCAB13 Frame_Shift_Del p.S342Afs*25 0.16 TCGA-QG-A5Z2-01 17 47656170 47656170 C - NXPH3 Frame_Shift_Del p.P91Hfs*6 0.16 TCGA-QG-A5Z2-01 17 4804225 4804225 C T C17orf107 3'UTR 0.07 TCGA-QG-A5Z2-01 17 48187451 48187451 G A PDK2 Missense_Mutation p.R405H 0.34 deleterious(0) possibly_damaging(0.72) TCGA-QG-A5Z2-01 17 48270168 48270168 G - COL1A1 Frame_Shift_Del p.P622Lfs*144 0.16 TCGA-QG-A5Z2-01 17 49057161 49057161 T G SPAG9 Missense_Mutation p.T1119P 0.04 deleterious(0) probably_damaging(0.992) TCGA-QG-A5Z2-01 17 4996963 4996963 C A ZFP3 3'UTR 0.23 TCGA-QG-A5Z2-01 17 5341474 5341474 C T C1QBP Missense_Mutation p.A118T 0.32 deleterious(0.04) probably_damaging(0.97) TCGA-QG-A5Z2-01 17 57125117 57125117 C T TRIM37 Missense_Mutation p.D532N 0.30 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-QG-A5Z2-01 17 57140001 57140001 C T TRIM37 Missense_Mutation p.R290H 0.07 deleterious(0.02) probably_damaging(0.978) TCGA-QG-A5Z2-01 17 57189254 57189254 G A SKA2 3'UTR 0.41 TCGA-QG-A5Z2-01 17 60526166 60526166 C T METTL2A 3'UTR 0.33 TCGA-QG-A5Z2-01 17 61497894 61497894 C - TANC2 Frame_Shift_Del p.P1519Lfs*33 0.23 TCGA-QG-A5Z2-01 17 61558542 61558542 T C ACE Missense_Mutation p.L313P 0.25 tolerated(0.06) possibly_damaging(0.75) TCGA-QG-A5Z2-01 17 61568375 61568375 C - ACE Frame_Shift_Del p.S903Rfs*9 0.09 TCGA-QG-A5Z2-01 17 61781004 61781004 C A STRADA Silent p.L417L 0.27 TCGA-QG-A5Z2-01 17 61949477 61949477 C T CSH2 3'UTR 0.22 TCGA-QG-A5Z2-01 17 65850209 65850209 T C BPTF Missense_Mutation p.F256S 0.04 probably_damaging(0.996) TCGA-QG-A5Z2-01 17 66246316 66246316 T - AMZ2 Intron 0.38 TCGA-QG-A5Z2-01 17 68128571 68128571 G A KCNJ16 Missense_Mutation p.V115I 0.07 tolerated(0.06) probably_damaging(0.994) TCGA-QG-A5Z2-01 17 71198040 71198040 G A COG1 Splice_Site p.X691_splice 0.17 TCGA-QG-A5Z2-01 17 7129584 7129584 G A DVL2 Missense_Mutation p.T604M 0.22 tolerated(0.12) probably_damaging(0.938) TCGA-QG-A5Z2-01 17 7162085 7162085 G - ELP5 Intron 0.09 TCGA-QG-A5Z2-01 17 7192941 7192941 G A YBX2 Missense_Mutation p.R318C 0.20 tolerated(0.06) possibly_damaging(0.689) TCGA-QG-A5Z2-01 17 7250488 7250488 C T ACAP1 Missense_Mutation p.R424W 0.16 deleterious(0) probably_damaging(0.926) TCGA-QG-A5Z2-01 17 72843641 72843641 C T GRIN2C Missense_Mutation p.V603M 0.08 deleterious(0.02) probably_damaging(0.981) TCGA-QG-A5Z2-01 17 7289974 7289974 G A TNK1 Missense_Mutation p.S411N 0.14 tolerated(0.05) benign(0.035) TCGA-QG-A5Z2-01 17 73209195 73209195 G A NUP85 Missense_Mutation p.G129D 0.15 tolerated(0.61) benign(0.003) TCGA-QG-A5Z2-01 17 7330458 7330458 G A C17orf74 Missense_Mutation p.R383H 0.23 tolerated(0.06) benign(0.154) TCGA-QG-A5Z2-01 17 73870833 73870833 C G TRIM47 Missense_Mutation p.V550L 0.11 deleterious(0.01) benign(0.061) TCGA-QG-A5Z2-01 17 73897821 73897821 T C MRPL38 Missense_Mutation p.Y188C 0.12 deleterious(0.02) probably_damaging(0.983) TCGA-QG-A5Z2-01 17 74004503 74004503 G T EVPL Missense_Mutation p.L1595M 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-QG-A5Z2-01 17 74008094 74008094 G A EVPL Missense_Mutation p.A817V 0.15 tolerated(0.98) benign(0.024) TCGA-QG-A5Z2-01 17 74015043 74015044 - G EVPL Frame_Shift_Ins p.Q413Sfs*23 0.07 TCGA-QG-A5Z2-01 17 75398196 75398196 C A SEPT9 Silent p.P44P 0.17 TCGA-QG-A5Z2-01 17 76210435 76210435 T C BIRC5 Missense_Mutation p.F13S 0.30 tolerated(0.05) benign(0.013) TCGA-QG-A5Z2-01 17 77093391 77093391 G - RBFOX3 Frame_Shift_Del p.I247Sfs*77 0.30 TCGA-QG-A5Z2-01 17 7814252 7814252 G A CHD3 Missense_Mutation p.A2007T 0.34 possibly_damaging(0.499) TCGA-QG-A5Z2-01 17 78187657 78187657 C T SGSH Missense_Mutation p.A231T 0.29 tolerated(0.11) benign(0.236) TCGA-QG-A5Z2-01 17 78321495 78321495 C T RNF213 Silent p.Y3120Y 0.10 TCGA-QG-A5Z2-01 17 7980420 7980420 G A ALOX12B Missense_Mutation p.A388V 0.30 deleterious(0) probably_damaging(0.989) TCGA-QG-A5Z2-01 17 8000015 8000015 C T ALOXE3 Missense_Mutation p.R821Q 0.05 deleterious(0.01) probably_damaging(1) TCGA-QG-A5Z2-01 17 80441771 80441771 C T NARF Intron 0.28 TCGA-QG-A5Z2-01 17 80897257 80897257 G A TBCD Silent p.T1128T 0.28 TCGA-QG-A5Z2-01 17 81052067 81052067 G A METRNL Missense_Mutation p.R228H 0.28 tolerated(0.18) benign(0.008) TCGA-QG-A5Z2-01 17 8701545 8701545 G A MFSD6L Silent p.G298G 0.26 TCGA-QG-A5Z2-01 17 9804342 9804342 C T RCVRN Missense_Mutation p.E153K 0.16 tolerated(0.11) possibly_damaging(0.49) TCGA-QG-A5Z2-01 18 11881006 11881006 G A GNAL Missense_Mutation p.G417S 0.29 tolerated(0.07) probably_damaging(0.939) TCGA-QG-A5Z2-01 18 15316647 15316647 G C RNU6-721P 3'Flank 0.26 TCGA-QG-A5Z2-01 18 18533679 18533679 T - ROCK1 Frame_Shift_Del p.K1307Nfs*3 0.27 TCGA-QG-A5Z2-01 18 19080049 19080049 C T GREB1L Missense_Mutation p.P1251S 0.12 deleterious(0.04) possibly_damaging(0.506) TCGA-QG-A5Z2-01 18 19371376 19371376 T C MIB1 Missense_Mutation p.V317A 0.21 tolerated(0.26) benign(0) TCGA-QG-A5Z2-01 18 21745097 21745097 T - OSBPL1A Frame_Shift_Del p.K894Nfs*71 0.28 TCGA-QG-A5Z2-01 18 29340664 29340664 T C SLC25A52 5'UTR 0.29 TCGA-QG-A5Z2-01 18 34387867 34387867 T C TPGS2 Missense_Mutation p.K66E 0.06 deleterious(0) possibly_damaging(0.831) TCGA-QG-A5Z2-01 18 34850817 34850817 A G CELF4 Missense_Mutation p.V338A 0.22 tolerated(0.16) benign(0.345) TCGA-QG-A5Z2-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.11 TCGA-QG-A5Z2-01 18 47810843 47810843 C T CXXC1 Silent p.A374A 0.20 TCGA-QG-A5Z2-01 18 53252542 53252542 A G TCF4 Silent p.T140T 0.23 TCGA-QG-A5Z2-01 18 54363501 54363501 T G WDR7 Silent p.G462G 0.18 TCGA-QG-A5Z2-01 18 54694425 54694425 G A WDR7 Missense_Mutation p.R1487H 0.25 deleterious(0) probably_damaging(0.994) TCGA-QG-A5Z2-01 18 55103500 55103500 C G ONECUT2 Missense_Mutation p.H184Q 0.19 tolerated_low_confidence(0.12) possibly_damaging(0.795) TCGA-QG-A5Z2-01 18 57106930 57106930 C T CCBE1 Silent p.K298K 0.20 TCGA-QG-A5Z2-01 18 57122104 57122104 G A CCBE1 Silent p.T211T 0.27 TCGA-QG-A5Z2-01 18 57364480 57364480 G A CCBE1 Missense_Mutation p.T32M 0.12 deleterious_low_confidence(0.05) benign(0.386) TCGA-QG-A5Z2-01 18 59483365 59483365 G A RNF152 Missense_Mutation p.A111V 0.31 tolerated(0.71) benign(0.01) TCGA-QG-A5Z2-01 18 61460422 61460423 - T SERPINB7 Frame_Shift_Ins p.S85Ffs*2 0.22 TCGA-QG-A5Z2-01 18 61460480 61460480 T - SERPINB7 Frame_Shift_Del p.F103Lfs*33 0.10 TCGA-QG-A5Z2-01 18 67863751 67863751 A - RTTN Frame_Shift_Del p.F276Sfs*69 0.08 TCGA-QG-A5Z2-01 18 6983123 6983123 T C LAMA1 Missense_Mutation p.H1924R 0.13 tolerated(0.44) benign(0.001) TCGA-QG-A5Z2-01 18 71796729 71796729 T - FBXO15 Frame_Shift_Del p.K232Nfs*5 0.17 TCGA-QG-A5Z2-01 18 72515979 72515979 C T ZNF407 Intron 0.32 TCGA-QG-A5Z2-01 18 74155003 74155003 C T ZNF516 Missense_Mutation p.R3H 0.19 deleterious(0.04) possibly_damaging(0.512) TCGA-QG-A5Z2-01 18 77170695 77170695 G T NFATC1 Missense_Mutation p.E127D 0.18 tolerated(0.48) benign(0.005) TCGA-QG-A5Z2-01 18 77513844 77513844 C T CTDP1 3'UTR 0.09 TCGA-QG-A5Z2-01 19 10201953 10201953 C T C19orf66 Missense_Mutation p.R138C 0.07 tolerated(0.05) possibly_damaging(0.855) TCGA-QG-A5Z2-01 19 10262188 10262188 G A DNMT1 Silent p.D717D 0.19 TCGA-QG-A5Z2-01 19 1037831 1037831 G T CNN2 Missense_Mutation p.G288C 0.07 deleterious(0) possibly_damaging(0.648) TCGA-QG-A5Z2-01 19 1046340 1046340 C T ABCA7 Silent p.S519S 0.07 TCGA-QG-A5Z2-01 19 11332695 11332695 C A DOCK6 Missense_Mutation p.A1128S 0.10 tolerated(0.58) benign(0.011) TCGA-QG-A5Z2-01 19 12155504 12155504 A - ZNF878 Frame_Shift_Del p.S238Lfs*5 0.15 TCGA-QG-A5Z2-01 19 12936581 12936581 C T RTBDN Missense_Mutation p.R242H 0.10 deleterious(0.01) unknown(0) TCGA-QG-A5Z2-01 19 13397711 13397711 G A CACNA1A Silent p.D1053D 0.10 TCGA-QG-A5Z2-01 19 14150382 14150382 G A IL27RA Missense_Mutation p.R94Q 0.26 tolerated(0.06) probably_damaging(0.995) TCGA-QG-A5Z2-01 19 14199952 14199952 G A SAMD1 Missense_Mutation p.R287W 0.33 deleterious(0) probably_damaging(0.929) TCGA-QG-A5Z2-01 19 14626792 14626793 - G DNAJB1 Frame_Shift_Ins p.Q328Pfs*8 0.20 TCGA-QG-A5Z2-01 19 15367864 15367864 T C BRD4 Missense_Mutation p.S488G 0.24 benign(0.153) TCGA-QG-A5Z2-01 19 16986869 16986869 C T SIN3B Missense_Mutation p.H898Y 0.30 deleterious(0) possibly_damaging(0.703) TCGA-QG-A5Z2-01 19 17329051 17329051 G A USE1 Intron 0.06 TCGA-QG-A5Z2-01 19 17337847 17337847 C T OCEL1 Silent p.R97R 0.34 TCGA-QG-A5Z2-01 19 17836730 17836730 A G MAP1S Silent p.A179A 0.07 TCGA-QG-A5Z2-01 19 17836781 17836781 C - MAP1S Frame_Shift_Del p.P198Rfs*93 0.22 TCGA-QG-A5Z2-01 19 1821628 1821628 C T REXO1 Missense_Mutation p.G762S 0.06 tolerated(0.16) benign(0.434) TCGA-QG-A5Z2-01 19 18239268 18239268 G T MAST3 Missense_Mutation p.E350D 0.26 tolerated(0.38) benign(0.003) TCGA-QG-A5Z2-01 19 19038797 19038797 C T DDX49 Silent p.D405D 0.27 TCGA-QG-A5Z2-01 19 19293449 19293449 C T MEF2BNB Missense_Mutation p.V87M 0.34 deleterious(0) possibly_damaging(0.787) TCGA-QG-A5Z2-01 19 19371839 19371839 C T HAPLN4 Silent p.V89V 0.20 TCGA-QG-A5Z2-01 19 2076834 2076834 G A MOB3A Silent p.I200I 0.16 TCGA-QG-A5Z2-01 19 2245490 2245490 C T SF3A2 Silent p.P97P 0.33 TCGA-QG-A5Z2-01 19 22575783 22575783 A T ZNF98 Missense_Mutation p.V85D 0.36 deleterious(0.01) probably_damaging(0.954) TCGA-QG-A5Z2-01 19 23542632 23542632 T A ZNF91 Missense_Mutation p.Y1050F 0.12 tolerated(0.12) probably_damaging(0.989) TCGA-QG-A5Z2-01 19 30934715 30934715 G A ZNF536 Silent p.A82A 0.24 TCGA-QG-A5Z2-01 19 33872591 33872591 T G CEBPG 3'UTR 0.25 TCGA-QG-A5Z2-01 19 33968959 33968959 C T PEPD Missense_Mutation p.V181I 0.36 deleterious(0.02) benign(0.072) TCGA-QG-A5Z2-01 19 35758529 35758531 GAG - LSR In_Frame_Del p.R605del 0.14 TCGA-QG-A5Z2-01 19 36051417 36051417 G A ATP4A Missense_Mutation p.A212V 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-QG-A5Z2-01 19 3612126 3612126 G A CACTIN Missense_Mutation p.T691M 0.31 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 19 3619092 3619092 G A CACTIN Silent p.L345L 0.05 TCGA-QG-A5Z2-01 19 36234929 36234929 G A U2AF1L4 Intron 0.24 TCGA-QG-A5Z2-01 19 36273294 36273294 A C ARHGAP33 Silent p.R369R 0.30 TCGA-QG-A5Z2-01 19 36276328 36276328 G A ARHGAP33 Missense_Mutation p.V629I 0.11 tolerated_low_confidence(0.15) benign(0.208) TCGA-QG-A5Z2-01 19 36362784 36362784 C A APLP1 Silent p.P232P 0.10 TCGA-QG-A5Z2-01 19 3752514 3752514 C T APBA3 Missense_Mutation p.A463T 0.11 tolerated(0.08) benign(0.426) TCGA-QG-A5Z2-01 19 3762745 3762745 G - MRPL54 Frame_Shift_Del p.A18Pfs*5 0.30 TCGA-QG-A5Z2-01 19 37677791 37677791 A G ZNF585B Silent p.C216C 0.11 TCGA-QG-A5Z2-01 19 38028573 38028573 C T ZNF793 Missense_Mutation p.P338L 0.32 deleterious(0) possibly_damaging(0.868) TCGA-QG-A5Z2-01 19 38055564 38055564 A G ZNF571 Missense_Mutation p.V589A 0.10 tolerated(0.06) benign(0.063) TCGA-QG-A5Z2-01 19 38895593 38895593 G A FAM98C Missense_Mutation p.R132H 0.14 tolerated(0.31) benign(0.011) TCGA-QG-A5Z2-01 19 38973979 38973979 C A RYR1 Missense_Mutation p.P1586Q 0.08 probably_damaging(0.917) TCGA-QG-A5Z2-01 19 3964758 3964758 G A DAPK3 Silent p.G98G 0.30 TCGA-QG-A5Z2-01 19 39663677 39663677 C T PAK4 Silent p.P108P 0.29 TCGA-QG-A5Z2-01 19 3984248 3984248 A G EEF2 Missense_Mutation p.L35P 0.13 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 19 39899327 39899328 TG - ZFP36 Frame_Shift_Del p.V330Ffs*2 0.36 TCGA-QG-A5Z2-01 19 39948323 39948323 G A SUPT5H Missense_Mutation p.D84N 0.32 deleterious(0.01) possibly_damaging(0.836) TCGA-QG-A5Z2-01 19 39957131 39957131 G A SUPT5H Silent p.V296V 0.04 TCGA-QG-A5Z2-01 19 40319100 40319100 C T DYRK1B Missense_Mutation p.R215Q 0.11 deleterious(0) probably_damaging(0.995) TCGA-QG-A5Z2-01 19 40433949 40433949 G A FCGBP Missense_Mutation p.A107V 0.22 possibly_damaging(0.603) TCGA-QG-A5Z2-01 19 40434205 40434205 G T FCGBP Missense_Mutation p.Q22K 0.07 benign(0.02) TCGA-QG-A5Z2-01 19 40581591 40581591 T C ZNF780A Missense_Mutation p.E254G 0.06 deleterious(0) probably_damaging(0.948) TCGA-QG-A5Z2-01 19 4117625 4117625 G T MAP2K2 Missense_Mutation p.A32E 0.35 tolerated(0.22) benign(0.423) TCGA-QG-A5Z2-01 19 4157147 4157147 C T CREB3L3 Silent p.S104S 0.14 TCGA-QG-A5Z2-01 19 42407537 42407537 C T ARHGEF1 Missense_Mutation p.R622C 0.06 deleterious(0) probably_damaging(0.976) TCGA-QG-A5Z2-01 19 42818986 42818986 G T TMEM145 Missense_Mutation p.G135C 0.30 tolerated(0.05) probably_damaging(0.922) TCGA-QG-A5Z2-01 19 42872755 42872755 G - MEGF8 Frame_Shift_Del p.G2076Afs*20 0.24 TCGA-QG-A5Z2-01 19 42879716 42879716 C T MEGF8 Missense_Mutation p.R2376C 0.06 deleterious(0) probably_damaging(0.996) TCGA-QG-A5Z2-01 19 4432190 4432190 G T CHAF1A Missense_Mutation p.R730M 0.10 deleterious(0.02) possibly_damaging(0.579) TCGA-QG-A5Z2-01 19 4447567 4447567 G T UBXN6 Missense_Mutation p.L199M 0.26 tolerated(0.17) probably_damaging(0.961) TCGA-QG-A5Z2-01 19 45315642 45315642 G A BCAM Missense_Mutation p.V143M 0.14 deleterious(0.03) possibly_damaging(0.768) TCGA-QG-A5Z2-01 19 45495910 45495910 C T CLPTM1 Missense_Mutation p.R589C 0.20 deleterious(0) probably_damaging(0.972) TCGA-QG-A5Z2-01 19 4550898 4550898 G A SEMA6B Missense_Mutation p.A345V 0.23 deleterious(0.03) possibly_damaging(0.762) TCGA-QG-A5Z2-01 19 45571276 45571276 C A CLASRP Silent p.T557T 0.06 TCGA-QG-A5Z2-01 19 45656242 45656242 C T NKPD1 Missense_Mutation p.A485T 0.07 deleterious(0.04) probably_damaging(1) TCGA-QG-A5Z2-01 19 45659118 45659118 C T NKPD1 Missense_Mutation p.V196M 0.19 deleterious(0) probably_damaging(0.966) TCGA-QG-A5Z2-01 19 46522517 46522517 C T PGLYRP1 Nonsense_Mutation p.W190* 0.06 TCGA-QG-A5Z2-01 19 46973936 46973936 G A PNMAL1 Silent p.R119R 0.10 TCGA-QG-A5Z2-01 19 46999049 46999049 G - PNMAL2 5'UTR 0.17 TCGA-QG-A5Z2-01 19 48229092 48229092 C T EHD2 Missense_Mutation p.R176C 0.22 deleterious(0) possibly_damaging(0.849) TCGA-QG-A5Z2-01 19 48343020 48343020 G A CRX Silent p.P232P 0.18 TCGA-QG-A5Z2-01 19 48556234 48556234 G A PLA2G4C Intron 0.24 TCGA-QG-A5Z2-01 19 48800568 48800568 C T CCDC114 Missense_Mutation p.V560I 0.20 tolerated(0.06) probably_damaging(0.998) TCGA-QG-A5Z2-01 19 49002339 49002339 G A LMTK3 Missense_Mutation p.R692C 0.20 possibly_damaging(0.718) TCGA-QG-A5Z2-01 19 49113245 49113245 G A FAM83E Missense_Mutation p.R216C 0.22 deleterious(0) probably_damaging(0.996) TCGA-QG-A5Z2-01 19 49206408 49206408 G A FUT2 Silent p.T65T 0.09 TCGA-QG-A5Z2-01 19 49399714 49399714 G A TULP2 Missense_Mutation p.R62W 0.24 deleterious(0) probably_damaging(0.958) TCGA-QG-A5Z2-01 19 49507581 49507581 C T RUVBL2 Silent p.G57G 0.34 TCGA-QG-A5Z2-01 19 49593597 49593597 G A SNRNP70 Missense_Mutation p.R66H 0.20 deleterious(0.01) possibly_damaging(0.792) TCGA-QG-A5Z2-01 19 49658463 49658463 G T HRC Missense_Mutation p.S11Y 0.10 deleterious(0.03) benign(0.198) TCGA-QG-A5Z2-01 19 49935853 49935853 C T SLC17A7 Missense_Mutation p.G358D 0.10 deleterious(0) possibly_damaging(0.766) TCGA-QG-A5Z2-01 19 49937069 49937069 C T SLC17A7 Missense_Mutation p.A261T 0.08 tolerated(0.05) benign(0.418) TCGA-QG-A5Z2-01 19 49937265 49937265 C T SLC17A7 Missense_Mutation p.G226R 0.13 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 19 50028001 50028001 C T FCGRT Missense_Mutation p.A280V 0.17 tolerated(0.17) benign(0.025) TCGA-QG-A5Z2-01 19 50191542 50191542 C T PRMT1 3'UTR 0.19 TCGA-QG-A5Z2-01 19 50243349 50243349 T C TSKS Missense_Mutation p.K530R 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-QG-A5Z2-01 19 50295210 50295210 C - AP2A1 Frame_Shift_Del p.K165Sfs*69 0.20 TCGA-QG-A5Z2-01 19 50303314 50303314 C T AP2A1 Silent p.G454G 0.34 TCGA-QG-A5Z2-01 19 50550218 50550218 A C ZNF473 Missense_Mutation p.T840P 0.27 deleterious(0.04) possibly_damaging(0.803) TCGA-QG-A5Z2-01 19 51192197 51192197 G - SHANK1 Frame_Shift_Del p.T693Pfs*33 0.22 TCGA-QG-A5Z2-01 19 51629030 51629030 C A SIGLEC9 Missense_Mutation p.L200I 0.09 tolerated(0.1) benign(0.438) TCGA-QG-A5Z2-01 19 5210768 5210768 C T PTPRS Silent p.T1761T 0.12 TCGA-QG-A5Z2-01 19 52518933 52518933 A C ZNF614 3'UTR 0.38 TCGA-QG-A5Z2-01 19 52537033 52537033 G T ZNF432 Silent p.A633A 0.19 TCGA-QG-A5Z2-01 19 5258064 5258064 C T PTPRS Missense_Mutation p.V224M 0.22 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 19 52825164 52825166 CAT - ZNF480 In_Frame_Del p.H221del 0.15 TCGA-QG-A5Z2-01 19 53118008 53118008 T - ZNF83 5'UTR 0.15 TCGA-QG-A5Z2-01 19 53912241 53912241 C T ZNF765 Missense_Mutation p.T478M 0.18 tolerated(0.33) benign(0.007) TCGA-QG-A5Z2-01 19 544096 544096 C T GZMM Silent p.L9L 0.15 TCGA-QG-A5Z2-01 19 54800034 54800034 G A LILRA3 3'UTR 0.15 TCGA-QG-A5Z2-01 19 54967878 54967878 G A LENG8 Silent p.P503P 0.31 TCGA-QG-A5Z2-01 19 55598763 55598763 G A EPS8L1 Missense_Mutation p.R682H 0.12 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 19 55964619 55964619 T C ISOC2 3'UTR 0.39 TCGA-QG-A5Z2-01 19 56001751 56001751 C T SSC5D Silent p.L188L 0.26 TCGA-QG-A5Z2-01 19 56109167 56109167 G A FIZ1 Missense_Mutation p.P22L 0.15 tolerated(0.17) unknown(0) TCGA-QG-A5Z2-01 19 57175461 57175461 T G ZNF835 Missense_Mutation p.K369T 0.07 deleterious(0) probably_damaging(0.963) TCGA-QG-A5Z2-01 19 57649928 57649928 G A ZIM3 Silent p.T18T 0.21 TCGA-QG-A5Z2-01 19 58049275 58049275 A G ZNF549 Silent p.E301E 0.24 TCGA-QG-A5Z2-01 19 58152397 58152397 G A ZNF211 Silent p.S246S 0.10 TCGA-QG-A5Z2-01 19 58868373 58868373 C T ZNF497 Missense_Mutation p.R210H 0.18 deleterious(0) probably_damaging(0.987) TCGA-QG-A5Z2-01 19 608070 608070 G A HCN2 Nonsense_Mutation p.W442* 0.29 TCGA-QG-A5Z2-01 19 6187379 6187379 C T ACSBG2 Silent p.N542N 0.30 TCGA-QG-A5Z2-01 19 6387446 6387446 G A GTF2F1 Missense_Mutation p.R151W 0.26 deleterious(0) benign(0.041) TCGA-QG-A5Z2-01 19 6686280 6686280 T C C3 Missense_Mutation p.D1222G 0.12 deleterious(0.02) benign(0.067) TCGA-QG-A5Z2-01 19 6731294 6731294 C A GPR108 Splice_Site p.X451_splice 0.26 TCGA-QG-A5Z2-01 19 7570887 7570887 C A C19orf45 Missense_Mutation p.P348H 0.14 deleterious(0) possibly_damaging(0.893) TCGA-QG-A5Z2-01 19 7754195 7754195 G A FCER2 Missense_Mutation p.R284W 0.29 deleterious(0) probably_damaging(0.996) TCGA-QG-A5Z2-01 19 8197905 8197905 G A FBN3 Silent p.P559P 0.35 TCGA-QG-A5Z2-01 19 8495653 8495653 G A MARCH2 Missense_Mutation p.G162R 0.23 deleterious(0) probably_damaging(0.986) TCGA-QG-A5Z2-01 19 8528503 8528503 G T HNRNPM Missense_Mutation p.S124I 0.21 tolerated(0.39) benign(0.346) TCGA-QG-A5Z2-01 19 8619426 8619426 G A MYO1F Silent p.Y87Y 0.12 TCGA-QG-A5Z2-01 19 9009317 9009317 C A MUC16 Missense_Mutation p.K13052N 0.25 probably_damaging(0.921) TCGA-QG-A5Z2-01 19 9068113 9068113 T C MUC16 Missense_Mutation p.I6445V 0.06 unknown(0) TCGA-QG-A5Z2-01 19 9072364 9072364 A G MUC16 Missense_Mutation p.W5028R 0.05 unknown(0) TCGA-QG-A5Z2-01 19 9083586 9083586 C A MUC16 Silent p.S2743S 0.12 TCGA-QG-A5Z2-01 19 9225824 9225824 A G OR7G1 Missense_Mutation p.F206L 0.25 tolerated(0.98) benign(0.083) TCGA-QG-A5Z2-01 1 10197223 10197223 C T UBE4B Missense_Mutation p.R775C 0.10 deleterious(0) probably_damaging(0.985) TCGA-QG-A5Z2-01 1 10719831 10719831 T A CASZ1 Missense_Mutation p.N423I 0.18 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-QG-A5Z2-01 1 108023259 108023259 C T NTNG1 Missense_Mutation p.H473Y 0.37 tolerated(0.76) benign(0.296) TCGA-QG-A5Z2-01 1 108993241 108993241 C T NBPF6 Silent p.D6D 0.20 TCGA-QG-A5Z2-01 1 109191119 109191119 A - HENMT1 3'UTR 0.31 TCGA-QG-A5Z2-01 1 109394720 109394720 C T AKNAD1 Silent p.T189T 0.36 TCGA-QG-A5Z2-01 1 109745776 109745776 T - KIAA1324 3'UTR 0.09 TCGA-QG-A5Z2-01 1 110466468 110466468 C T CSF1 Missense_Mutation p.R409C 0.21 tolerated(0.17) possibly_damaging(0.829) TCGA-QG-A5Z2-01 1 111216066 111216066 C A KCNA3 Missense_Mutation p.G456W 0.22 tolerated(0.27) probably_damaging(1) TCGA-QG-A5Z2-01 1 111962326 111962326 G A OVGP1 Missense_Mutation p.A309V 0.15 deleterious(0.04) possibly_damaging(0.892) TCGA-QG-A5Z2-01 1 112269641 112269641 G A FAM212B Silent p.A281A 0.42 TCGA-QG-A5Z2-01 1 11317208 11317208 C T MTOR Missense_Mutation p.V96M 0.31 tolerated(0.21) possibly_damaging(0.708) TCGA-QG-A5Z2-01 1 114522651 114522651 A G OLFML3 Intron 0.17 TCGA-QG-A5Z2-01 1 115258766 115258766 G A NRAS Silent p.L6L 0.19 TCGA-QG-A5Z2-01 1 115520224 115520224 A - SYCP1 Frame_Shift_Del p.D793Tfs*65 0.31 TCGA-QG-A5Z2-01 1 115596048 115596048 A G TSPAN2 Silent p.V184V 0.24 TCGA-QG-A5Z2-01 1 117487573 117487573 C T PTGFRN Missense_Mutation p.R231C 0.16 deleterious(0.01) probably_damaging(0.976) TCGA-QG-A5Z2-01 1 117564251 117564251 A T CD101 Missense_Mutation p.N692Y 0.06 deleterious(0.01) possibly_damaging(0.903) TCGA-QG-A5Z2-01 1 117661030 117661030 C A TRIM45 Missense_Mutation p.G283V 0.11 deleterious(0) possibly_damaging(0.598) TCGA-QG-A5Z2-01 1 11907243 11907243 C T NPPA Missense_Mutation p.R126Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 1 120301762 120301762 T - HMGCS2 Frame_Shift_Del p.I277Sfs*22 0.21 TCGA-QG-A5Z2-01 1 120438116 120438116 T - ADAM30 Frame_Shift_Del p.S282Vfs*3 0.16 TCGA-QG-A5Z2-01 1 12726163 12726163 G A AADACL4 Missense_Mutation p.R214Q 0.41 tolerated(0.76) benign(0.044) TCGA-QG-A5Z2-01 1 12980225 12980225 C A PRAMEF7 Missense_Mutation p.L473I 0.14 benign(0.399) TCGA-QG-A5Z2-01 1 145075751 145075751 G A PDE4DIP Nonsense_Mutation p.R38* 0.07 TCGA-QG-A5Z2-01 1 14925488 14925488 C G KAZN 5'UTR 0.26 TCGA-QG-A5Z2-01 1 150532571 150532571 C A ADAMTSL4 Missense_Mutation p.L1042M 0.25 tolerated(0.31) probably_damaging(0.996) TCGA-QG-A5Z2-01 1 151497327 151497327 G C CGN Missense_Mutation p.E527Q 0.25 tolerated(0.06) possibly_damaging(0.766) TCGA-QG-A5Z2-01 1 152193177 152193177 C T HRNR Missense_Mutation p.V310I 0.26 unknown(0) TCGA-QG-A5Z2-01 1 152284262 152284262 C T FLG Missense_Mutation p.G1034R 0.36 possibly_damaging(0.642) TCGA-QG-A5Z2-01 1 152538448 152538448 G A LCE3E Silent p.G79G 0.22 TCGA-QG-A5Z2-01 1 152552261 152552261 C A LCE3D Missense_Mutation p.G51V 0.24 deleterious_low_confidence(0) unknown(0) TCGA-QG-A5Z2-01 1 152648952 152648952 C A LCE2C 3'UTR 0.35 TCGA-QG-A5Z2-01 1 152732421 152732421 C T KPRP Silent p.Y119Y 0.28 TCGA-QG-A5Z2-01 1 152857218 152857218 G T SMCP Missense_Mutation p.S107I 0.06 deleterious(0.01) possibly_damaging(0.607) TCGA-QG-A5Z2-01 1 153012617 153012617 G A SPRR2D Missense_Mutation p.P69L 0.16 deleterious_low_confidence(0) unknown(0) TCGA-QG-A5Z2-01 1 154302930 154302930 G T ATP8B2 Silent p.A63A 0.22 TCGA-QG-A5Z2-01 1 154965222 154965222 C T FLAD1 Missense_Mutation p.R530C 0.32 deleterious(0) probably_damaging(0.997) TCGA-QG-A5Z2-01 1 155291800 155291800 C T RUSC1 Missense_Mutation p.P79L 0.12 tolerated_low_confidence(0.08) benign(0.079) TCGA-QG-A5Z2-01 1 155582035 155582035 G T MSTO1 Missense_Mutation p.E247D 0.07 deleterious(0) probably_damaging(0.919) TCGA-QG-A5Z2-01 1 156214533 156214533 G A PAQR6 Missense_Mutation p.P154L 0.35 tolerated_low_confidence(0.1) benign(0) TCGA-QG-A5Z2-01 1 157666959 157666960 - T FCRL3 Frame_Shift_Ins p.R272Kfs*16 0.27 TCGA-QG-A5Z2-01 1 158639207 158639207 T C SPTA1 Silent p.E608E 0.27 TCGA-QG-A5Z2-01 1 160063036 160063036 C A IGSF8 Silent p.G330G 0.25 TCGA-QG-A5Z2-01 1 160123003 160123003 G T ATP1A4 Missense_Mutation p.D66Y 0.14 deleterious(0) possibly_damaging(0.461) TCGA-QG-A5Z2-01 1 160278895 160278895 A G COPA Silent p.P405P 0.20 TCGA-QG-A5Z2-01 1 160389261 160389261 C T VANGL2 Missense_Mutation p.S221L 0.20 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 1 160604596 160604596 C T SLAMF1 Silent p.G169G 0.05 TCGA-QG-A5Z2-01 1 161042580 161042580 G T PVRL4 Silent p.A468A 0.12 TCGA-QG-A5Z2-01 1 161068402 161068402 T G KLHDC9 Missense_Mutation p.L26W 0.32 deleterious_low_confidence(0.04) benign(0.048) TCGA-QG-A5Z2-01 1 161128413 161128413 C T UFC1 3'UTR 0.23 TCGA-QG-A5Z2-01 1 161751784 161751784 G A ATF6 Missense_Mutation p.C81Y 0.15 tolerated(0.49) benign(0.003) TCGA-QG-A5Z2-01 1 16386088 16386088 G T FAM131C Missense_Mutation p.Q155K 0.24 deleterious(0.03) benign(0.221) TCGA-QG-A5Z2-01 1 166826740 166826740 A - TADA1 3'UTR 0.23 TCGA-QG-A5Z2-01 1 167097380 167097380 T C DUSP27 Silent p.T1004T 0.36 TCGA-QG-A5Z2-01 1 167097670 167097670 A C DUSP27 Missense_Mutation p.K1101T 0.26 tolerated(0.22) benign(0.221) TCGA-QG-A5Z2-01 1 167358897 167358897 C T POU2F1 Nonsense_Mutation p.R296* 0.19 TCGA-QG-A5Z2-01 1 167666622 167666622 C T RCSD1 Missense_Mutation p.A254V 0.20 tolerated(0.06) possibly_damaging(0.811) TCGA-QG-A5Z2-01 1 1689833 1689833 G A NADK Intron 0.07 TCGA-QG-A5Z2-01 1 170136883 170136883 C T METTL11B Silent p.S279S 0.06 TCGA-QG-A5Z2-01 1 172525042 172525042 G A SUCO Missense_Mutation p.V108M 0.35 deleterious_low_confidence(0.04) benign(0.27) TCGA-QG-A5Z2-01 1 175113521 175113522 - T TNN Splice_Site p.X1199_splice 0.20 TCGA-QG-A5Z2-01 1 176564479 176564479 G A PAPPA2 Missense_Mutation p.R580Q 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-QG-A5Z2-01 1 176769219 176769219 G A PAPPA2 Missense_Mutation p.R1718H 0.34 deleterious(0.01) possibly_damaging(0.833) TCGA-QG-A5Z2-01 1 176826711 176826711 A G ASTN1 3'Flank 0.08 TCGA-QG-A5Z2-01 1 176863957 176863957 G A ASTN1 Missense_Mutation p.P894L 0.27 tolerated(0.07) benign(0.104) TCGA-QG-A5Z2-01 1 178427042 178427042 T A RASAL2 Missense_Mutation p.I872K 0.09 tolerated(0.92) benign(0.001) TCGA-QG-A5Z2-01 1 179084096 179084096 T G ABL2 Missense_Mutation p.Q493P 0.25 deleterious(0) possibly_damaging(0.797) TCGA-QG-A5Z2-01 1 18152648 18152648 C T ACTL8 Silent p.R245R 0.32 TCGA-QG-A5Z2-01 1 183072489 183072489 C T LAMC1 Missense_Mutation p.R149C 0.12 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 1 183495829 183495829 C T SMG7 Silent p.S137S 0.18 TCGA-QG-A5Z2-01 1 185130045 185130045 T G SWT1 Missense_Mutation p.N24K 0.27 tolerated_low_confidence(0.27) benign(0.035) TCGA-QG-A5Z2-01 1 185932969 185932969 T C HMCN1 Silent p.G680G 0.08 TCGA-QG-A5Z2-01 1 190234069 190234069 C T BRINP3 Missense_Mutation p.A182T 0.25 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 1 196965262 196965262 T C CFHR5 Missense_Mutation p.Y301H 0.18 tolerated(0.09) benign(0.072) TCGA-QG-A5Z2-01 1 197168889 197168890 - T ZBTB41 Frame_Shift_Ins p.H239Tfs*24 0.33 TCGA-QG-A5Z2-01 1 197396685 197396685 C T CRB1 Nonsense_Mutation p.R744* 0.19 TCGA-QG-A5Z2-01 1 197887090 197887090 G A LHX9 Missense_Mutation p.R46H 0.25 tolerated_low_confidence(0.13) possibly_damaging(0.608) TCGA-QG-A5Z2-01 1 198703522 198703522 G A PTPRC Missense_Mutation p.V749I 0.22 deleterious(0) probably_damaging(0.992) TCGA-QG-A5Z2-01 1 200960262 200960262 G A KIF21B Missense_Mutation p.R824C 0.08 deleterious(0) possibly_damaging(0.84) TCGA-QG-A5Z2-01 1 201333470 201333470 G A TNNT2 Missense_Mutation p.R139C 0.22 deleterious(0) probably_damaging(0.955) TCGA-QG-A5Z2-01 1 201687674 201687674 G T NAV1 Silent p.S339S 0.07 TCGA-QG-A5Z2-01 1 204956452 204956452 C T NFASC Intron 0.18 TCGA-QG-A5Z2-01 1 206650043 206650043 C T IKBKE Missense_Mutation p.A188V 0.15 deleterious(0) possibly_damaging(0.798) TCGA-QG-A5Z2-01 1 208383682 208383682 G A PLXNA2 Silent p.Y438Y 0.17 TCGA-QG-A5Z2-01 1 208391050 208391050 A C PLXNA2 Missense_Mutation p.L73R 0.08 deleterious(0) probably_damaging(0.995) TCGA-QG-A5Z2-01 1 20972141 20972141 G A PINK1 Missense_Mutation p.V350M 0.20 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 1 210970868 210970868 C T KCNH1 Missense_Mutation p.E633K 0.31 deleterious(0.01) probably_damaging(0.964) TCGA-QG-A5Z2-01 1 21100060 21100060 T - HP1BP3 Frame_Shift_Del p.T132Qfs*13 0.20 TCGA-QG-A5Z2-01 1 211842609 211842609 G A NEK2 Silent p.D277D 0.30 TCGA-QG-A5Z2-01 1 212530298 212530298 T - PPP2R5A Frame_Shift_Del p.L330* 0.19 TCGA-QG-A5Z2-01 1 214542860 214542860 G A PTPN14 Missense_Mutation p.H1071Y 0.25 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 1 216538378 216538378 T C USH2A Missense_Mutation p.H234R 0.07 benign(0.065) TCGA-QG-A5Z2-01 1 220826514 220826514 G A MARK1 Missense_Mutation p.R603H 0.05 tolerated(0.12) benign(0.336) TCGA-QG-A5Z2-01 1 22150205 22150205 G A HSPG2 Missense_Mutation p.R4303C 0.22 probably_damaging(0.91) TCGA-QG-A5Z2-01 1 223438003 223438003 C T SUSD4 Silent p.S231S 0.33 TCGA-QG-A5Z2-01 1 223568377 223568377 C T C1orf65 Silent p.H520H 0.21 TCGA-QG-A5Z2-01 1 223987611 223987611 C T TP53BP2 Missense_Mutation p.R492Q 0.26 tolerated(0.11) probably_damaging(0.996) TCGA-QG-A5Z2-01 1 22456297 22456297 G A WNT4 Missense_Mutation p.T42M 0.30 tolerated(0.31) benign(0.096) TCGA-QG-A5Z2-01 1 2252959 2252959 G A MORN1 Missense_Mutation p.P453S 0.21 tolerated(0.08) possibly_damaging(0.586) TCGA-QG-A5Z2-01 1 226579989 226579989 T C PARP1 Missense_Mutation p.K105E 0.23 tolerated(0.74) benign(0.119) TCGA-QG-A5Z2-01 1 227204744 227204744 G T CDC42BPA Missense_Mutation p.D1506E 0.25 tolerated(0.27) benign(0.169) TCGA-QG-A5Z2-01 1 228433337 228433337 G A OBSCN Silent p.E1327E 0.05 TCGA-QG-A5Z2-01 1 228645859 228645859 C T HIST3H2BB Missense_Mutation p.A10V 0.12 tolerated_low_confidence(0.13) benign(0.003) TCGA-QG-A5Z2-01 1 22903336 22903336 C G EPHA8 Missense_Mutation p.C262W 0.34 deleterious(0) probably_damaging(0.937) TCGA-QG-A5Z2-01 1 229738051 229738051 T C TAF5L Missense_Mutation p.D288G 0.07 tolerated(0.27) benign(0.345) TCGA-QG-A5Z2-01 1 232650774 232650774 C A SIPA1L2 Missense_Mutation p.Q104H 0.23 tolerated(0.07) benign(0.396) TCGA-QG-A5Z2-01 1 233086447 233086447 G - NTPCR 5'UTR 0.18 TCGA-QG-A5Z2-01 1 235324233 235324233 T C RBM34 Missense_Mutation p.Q68R 0.16 tolerated(0.36) benign(0.013) TCGA-QG-A5Z2-01 1 235929477 235929477 A G LYST Missense_Mutation p.L2008S 0.29 tolerated(0.07) probably_damaging(0.996) TCGA-QG-A5Z2-01 1 23763782 23763782 C T ASAP3 Missense_Mutation p.E395K 0.12 deleterious(0.02) possibly_damaging(0.865) TCGA-QG-A5Z2-01 1 238090065 238090065 C T RP11-193H5.1 RNA 0.16 TCGA-QG-A5Z2-01 1 240072444 240072444 A - CHRM3 Frame_Shift_Del p.K567Rfs*31 0.26 TCGA-QG-A5Z2-01 1 240256543 240256543 G - FMN2 Frame_Shift_Del p.E380Kfs*72 0.22 TCGA-QG-A5Z2-01 1 243362382 243362382 T - CEP170 Frame_Shift_Del p.N204Tfs*11 0.20 TCGA-QG-A5Z2-01 1 246784734 246784734 T - CNST Frame_Shift_Del p.S130Qfs*7 0.22 TCGA-QG-A5Z2-01 1 246929405 246929405 T C SCCPDH Missense_Mutation p.M383T 0.15 tolerated(0.15) benign(0.016) TCGA-QG-A5Z2-01 1 247587692 247587692 G A NLRP3 Missense_Mutation p.G316E 0.12 tolerated(0.38) benign(0.042) TCGA-QG-A5Z2-01 1 24790537 24790537 C T NIPAL3 Silent p.G316G 0.09 TCGA-QG-A5Z2-01 1 248263420 248263422 TCT CC OR2L13 Frame_Shift_Del p.I248Tfs*44 0.10 TCGA-QG-A5Z2-01 1 248436438 248436438 G A OR2T33 Missense_Mutation p.R227C 0.22 tolerated(0.08) benign(0.075) TCGA-QG-A5Z2-01 1 248525128 248525128 C T OR2T4 Silent p.H82H 0.02 TCGA-QG-A5Z2-01 1 25880491 25880491 C T LDLRAP1 Missense_Mutation p.T56M 0.12 deleterious(0.04) probably_damaging(0.957) TCGA-QG-A5Z2-01 1 27190857 27190857 C T SFN 3'UTR 0.35 TCGA-QG-A5Z2-01 1 27333093 27333093 G C FAM46B Missense_Mutation p.S207W 0.27 deleterious(0) probably_damaging(0.937) TCGA-QG-A5Z2-01 1 27624460 27624460 C T WDTC1 Missense_Mutation p.R363C 0.34 deleterious(0.05) benign(0.398) TCGA-QG-A5Z2-01 1 27877223 27877223 G A AHDC1 Silent p.C468C 0.06 TCGA-QG-A5Z2-01 1 32101023 32101023 G - PEF1 Frame_Shift_Del p.P42Lfs*95 0.09 TCGA-QG-A5Z2-01 1 32258294 32258294 G A SPOCD1 Silent p.C920C 0.08 TCGA-QG-A5Z2-01 1 32669524 32669524 G A CCDC28B Missense_Mutation p.S70N 0.12 tolerated(0.16) benign(0) TCGA-QG-A5Z2-01 1 32694188 32694188 C T EIF3I Missense_Mutation p.A206V 0.06 deleterious(0) probably_damaging(0.943) TCGA-QG-A5Z2-01 1 34401431 34401431 G A CSMD2 Silent p.H174H 0.29 TCGA-QG-A5Z2-01 1 36786750 36786750 G A SH3D21 3'UTR 0.05 TCGA-QG-A5Z2-01 1 36820829 36820829 C T STK40 Missense_Mutation p.R183H 0.33 deleterious(0.02) probably_damaging(0.976) TCGA-QG-A5Z2-01 1 41304067 41304067 G A KCNQ4 Missense_Mutation p.A654T 0.09 tolerated(0.61) benign(0.004) TCGA-QG-A5Z2-01 1 41579057 41579057 G A SCMH1 Nonsense_Mutation p.R205* 0.24 TCGA-QG-A5Z2-01 1 43621954 43621954 G A FAM183A Silent p.T125T 0.15 TCGA-QG-A5Z2-01 1 44069291 44069291 G A PTPRF Missense_Mutation p.R823Q 0.23 tolerated(0.12) benign(0.023) TCGA-QG-A5Z2-01 1 44684761 44684761 C T DMAP1 Missense_Mutation p.R252C 0.10 deleterious(0) probably_damaging(0.993) TCGA-QG-A5Z2-01 1 45169782 45169782 C T C1orf228 Missense_Mutation p.P221S 0.25 tolerated(0.17) probably_damaging(0.988) TCGA-QG-A5Z2-01 1 45446810 45446810 C A EIF2B3 Missense_Mutation p.G11C 0.08 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 1 45475782 45475782 G - HECTD3 Frame_Shift_Del p.P212Rfs*11 0.13 TCGA-QG-A5Z2-01 1 46120981 46120981 G A GPBP1L1 Missense_Mutation p.A24V 0.29 tolerated(0.3) benign(0.003) TCGA-QG-A5Z2-01 1 47753261 47753262 CT - STIL Frame_Shift_Del p.E365Vfs*4 0.21 TCGA-QG-A5Z2-01 1 50666761 50666761 G A ELAVL4 Missense_Mutation p.A355T 0.07 tolerated(0.2) benign(0.248) TCGA-QG-A5Z2-01 1 52403066 52403066 G T RAB3B Silent p.R83R 0.15 TCGA-QG-A5Z2-01 1 53543377 53543377 C - PODN Frame_Shift_Del p.P303Rfs*7 0.14 TCGA-QG-A5Z2-01 1 53558400 53558400 G T SLC1A7 Missense_Mutation p.P286H 0.08 deleterious(0.03) probably_damaging(1) TCGA-QG-A5Z2-01 1 54423865 54423865 C T LRRC42 Missense_Mutation p.R173W 0.06 deleterious(0.02) probably_damaging(0.983) TCGA-QG-A5Z2-01 1 55145090 55145090 A G MROH7 Missense_Mutation p.Y735C 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-QG-A5Z2-01 1 55224719 55224719 C T PARS2 Missense_Mutation p.R39H 0.09 tolerated(0.07) benign(0.04) TCGA-QG-A5Z2-01 1 57480813 57480813 G A DAB1 Missense_Mutation p.S396F 0.32 tolerated(0.35) probably_damaging(1) TCGA-QG-A5Z2-01 1 5934593 5934593 C T NPHP4 Missense_Mutation p.E1057K 0.12 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 1 62979565 62979565 C T DOCK7 Missense_Mutation p.G1283D 0.26 tolerated(0.61) benign(0.003) TCGA-QG-A5Z2-01 1 64022857 64022857 T - EFCAB7 Frame_Shift_Del p.F431Lfs*3 0.29 TCGA-QG-A5Z2-01 1 64089235 64089236 - AGGA PGM1 Frame_Shift_Ins p.T37Rfs*13 0.23 TCGA-QG-A5Z2-01 1 6505819 6505819 C - ESPN Frame_Shift_Del p.P431Hfs*32 0.24 TCGA-QG-A5Z2-01 1 6693073 6693073 G A THAP3 Missense_Mutation p.R219H 0.10 tolerated(0.08) benign(0.024) TCGA-QG-A5Z2-01 1 67452173 67452173 T - MIER1 3'Flank 0.11 TCGA-QG-A5Z2-01 1 7725037 7725037 G A CAMTA1 Silent p.A810A 0.09 TCGA-QG-A5Z2-01 1 8397965 8397965 T A SLC45A1 Missense_Mutation p.S563T 0.31 tolerated(0.08) possibly_damaging(0.684) TCGA-QG-A5Z2-01 1 85491755 85491755 A - MCOLN3 Frame_Shift_Del p.F321Sfs*24 0.18 TCGA-QG-A5Z2-01 1 85589906 85589906 A G WDR63 Missense_Mutation p.N695S 0.18 tolerated(0.08) benign(0.04) TCGA-QG-A5Z2-01 1 86554882 86554882 C G COL24A1 Missense_Mutation p.G561A 0.25 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 1 874465 874465 G A SAMD11 Missense_Mutation p.S159N 0.09 deleterious(0.02) benign(0.258) TCGA-QG-A5Z2-01 1 89889996 89889996 G A GBP1P1 RNA 0.31 TCGA-QG-A5Z2-01 1 9129708 9129708 C T SLC2A5 5'UTR 0.35 TCGA-QG-A5Z2-01 1 94079453 94079454 GA - BCAR3 Intron 0.10 TCGA-QG-A5Z2-01 1 9776037 9776037 C - PIK3CD Frame_Shift_Del p.L169Cfs*48 0.14 TCGA-QG-A5Z2-01 1 9784449 9784449 G T PIK3CD Missense_Mutation p.G945V 0.26 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 1 99358642 99358642 C T LPPR5 Missense_Mutation p.A318T 0.05 tolerated(1) benign(0.075) TCGA-QG-A5Z2-01 1 99470123 99470123 C T LPPR5 Silent p.T35T 0.07 TCGA-QG-A5Z2-01 1 99772247 99772247 G A LPPR4 Missense_Mutation p.R658H 0.08 tolerated(0.07) probably_damaging(0.964) TCGA-QG-A5Z2-01 20 1293238 1293238 G A SDCBP2 Missense_Mutation p.R185W 0.19 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 20 14066374 14066374 G T MACROD2 Missense_Mutation p.A91S 0.09 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 20 21492693 21492693 C T NKX2-2 Silent p.A230A 0.07 TCGA-QG-A5Z2-01 20 21493008 21493008 G A NKX2-2 Silent p.A125A 0.18 TCGA-QG-A5Z2-01 20 23065343 23065343 C T CD93 Missense_Mutation p.R496H 0.30 tolerated(0.13) benign(0.002) TCGA-QG-A5Z2-01 20 25656945 25656945 G A ZNF337 Nonsense_Mutation p.R327* 0.17 TCGA-QG-A5Z2-01 20 25829462 25829462 C A FAM182B 5'UTR 0.06 TCGA-QG-A5Z2-01 20 30897813 30897813 G A KIF3B Missense_Mutation p.R78Q 0.12 tolerated(0.11) benign(0.09) TCGA-QG-A5Z2-01 20 30898348 30898348 C T KIF3B Silent p.G256G 0.35 TCGA-QG-A5Z2-01 20 3129132 3129133 CA - FASTKD5 Frame_Shift_Del p.V195Efs*7 0.09 TCGA-QG-A5Z2-01 20 31368169 31368169 G A DNMT3B Missense_Mutation p.A14T 0.20 tolerated_low_confidence(0.13) benign(0.004) TCGA-QG-A5Z2-01 20 3209511 3209511 C T SLC4A11 Missense_Mutation p.R765H 0.06 tolerated(0.19) benign(0.03) TCGA-QG-A5Z2-01 20 32699908 32699908 C T EIF2S2 Silent p.G3G 0.08 TCGA-QG-A5Z2-01 20 33764210 33764210 C T PROCR Nonsense_Mutation p.Q188* 0.18 TCGA-QG-A5Z2-01 20 35154303 35154303 G A DLGAP4 Nonsense_Mutation p.W882* 0.07 TCGA-QG-A5Z2-01 20 35783518 35783518 G A MROH8 Missense_Mutation p.T368M 0.12 tolerated(0.14) benign(0.139) TCGA-QG-A5Z2-01 20 44639608 44639608 C T MMP9 Missense_Mutation p.H190Y 0.24 deleterious(0) probably_damaging(0.983) TCGA-QG-A5Z2-01 20 45811977 45811977 G A EYA2 Missense_Mutation p.G492S 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-QG-A5Z2-01 20 47865855 47865855 T C ZNFX1 Missense_Mutation p.M1236V 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-QG-A5Z2-01 20 47871121 47871121 C T ZNFX1 Missense_Mutation p.R957H 0.31 tolerated(0.08) benign(0.01) TCGA-QG-A5Z2-01 20 51870965 51870965 G A TSHZ2 Missense_Mutation p.R323H 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-QG-A5Z2-01 20 53205276 53205276 A G DOK5 Missense_Mutation p.T114A 0.19 tolerated(0.33) benign(0.005) TCGA-QG-A5Z2-01 20 57016053 57016053 G A VAPB Missense_Mutation p.D163N 0.09 deleterious(0.01) benign(0.263) TCGA-QG-A5Z2-01 20 57089767 57089767 G A APCDD1L 5'UTR 0.26 TCGA-QG-A5Z2-01 20 58381208 58381208 A C PHACTR3 Missense_Mutation p.E429D 0.32 deleterious(0) probably_damaging(0.978) TCGA-QG-A5Z2-01 20 6057969 6057969 C T FERMT1 Missense_Mutation p.V629I 0.19 tolerated(0.69) benign(0.021) TCGA-QG-A5Z2-01 20 60791711 60791711 C T HRH3 Missense_Mutation p.R230H 0.11 deleterious(0.01) probably_damaging(0.938) TCGA-QG-A5Z2-01 20 60884361 60884361 G A LAMA5 3'UTR 0.23 TCGA-QG-A5Z2-01 20 60904048 60904048 G A LAMA5 Silent p.N1433N 0.07 TCGA-QG-A5Z2-01 20 61288362 61288362 G A SLCO4A1 Missense_Mutation p.V186M 0.12 deleterious(0.03) possibly_damaging(0.803) TCGA-QG-A5Z2-01 20 61429983 61429983 C T MRGBP Silent p.F105F 0.09 TCGA-QG-A5Z2-01 20 61444905 61444905 G A OGFR Silent p.P646P 0.29 TCGA-QG-A5Z2-01 20 62045533 62045533 G A KCNQ2 Silent p.P513P 0.23 TCGA-QG-A5Z2-01 20 62367355 62367355 G A ZGPAT 3'UTR 0.31 TCGA-QG-A5Z2-01 20 62597791 62597791 A G ZNF512B Missense_Mutation p.M246T 0.31 tolerated_low_confidence(0.11) benign(0.001) TCGA-QG-A5Z2-01 20 8639341 8639341 C T PLCB1 Silent p.L284L 0.07 TCGA-QG-A5Z2-01 21 10934935 10934935 A G TPTE Splice_Site p.X286_splice 0.06 TCGA-QG-A5Z2-01 21 15872878 15872878 T A SAMSN1 Missense_Mutation p.Q315L 0.43 tolerated(0.21) benign(0.063) TCGA-QG-A5Z2-01 21 15882724 15882724 G A SAMSN1 Silent p.D224D 0.34 TCGA-QG-A5Z2-01 21 16337586 16337586 A G NRIP1 Silent p.F976F 0.23 TCGA-QG-A5Z2-01 21 16338631 16338631 C T NRIP1 Missense_Mutation p.S628N 0.35 deleterious(0) probably_damaging(0.995) TCGA-QG-A5Z2-01 21 22910328 22910328 C T NCAM2 3'UTR 0.30 TCGA-QG-A5Z2-01 21 30338846 30338846 T - LTN1 Frame_Shift_Del p.N702Ifs*11 0.30 TCGA-QG-A5Z2-01 21 31992983 31992983 T C KRTAP20-4 Missense_Mutation p.Y3H 0.08 unknown(0) TCGA-QG-A5Z2-01 21 34660489 34660489 G A IL10RB Missense_Mutation p.A243T 0.27 tolerated(0.28) benign(0.009) TCGA-QG-A5Z2-01 21 35467738 35467738 G A SLC5A3 Missense_Mutation p.A81T 0.18 deleterious(0.04) probably_damaging(0.979) TCGA-QG-A5Z2-01 21 35476163 35476163 T C SLC5A3 3'UTR 0.31 TCGA-QG-A5Z2-01 21 35477389 35477389 T - SLC5A3 3'UTR 0.31 TCGA-QG-A5Z2-01 21 36259209 36259209 G A RUNX1 Silent p.S94S 0.08 TCGA-QG-A5Z2-01 21 41450629 41450629 G A DSCAM Silent p.L1566L 0.08 TCGA-QG-A5Z2-01 21 41741048 41741048 G A DSCAM Silent p.N211N 0.40 TCGA-QG-A5Z2-01 21 44324328 44324328 C T NDUFV3 Silent p.A402A 0.28 TCGA-QG-A5Z2-01 21 45223708 45223708 C T RRP1 3'UTR 0.29 TCGA-QG-A5Z2-01 21 45743693 45743693 C T PFKL Silent p.Y514Y 0.22 TCGA-QG-A5Z2-01 21 46101767 46101767 C T KRTAP12-1 Missense_Mutation p.S91N 0.08 tolerated(0.13) benign(0.213) TCGA-QG-A5Z2-01 21 47333958 47333958 G A PCBP3 Intron 0.32 TCGA-QG-A5Z2-01 21 47361645 47361645 G A PCBP3 3'UTR 0.07 TCGA-QG-A5Z2-01 21 47419574 47419574 C T COL6A1 Missense_Mutation p.P582S 0.12 tolerated(0.11) benign(0.256) TCGA-QG-A5Z2-01 21 47680752 47680752 C T MCM3AP Missense_Mutation p.R1179H 0.16 tolerated(0.11) benign(0.118) TCGA-QG-A5Z2-01 21 47744045 47744045 G C PCNT 5'UTR 0.38 TCGA-QG-A5Z2-01 22 16449629 16449629 G A OR11H1 Missense_Mutation p.A59V 0.07 tolerated(0.07) benign(0.15) TCGA-QG-A5Z2-01 22 19163734 19163734 C T SLC25A1 Missense_Mutation p.R282H 0.14 deleterious(0) probably_damaging(0.993) TCGA-QG-A5Z2-01 22 19511720 19511720 C - CLDN5 Frame_Shift_Del p.G105Vfs*2 0.24 TCGA-QG-A5Z2-01 22 19709169 19709169 G A SEPT5 Missense_Mutation p.A242T 0.15 tolerated(0.07) benign(0.005) TCGA-QG-A5Z2-01 22 19966485 19966485 G A ARVCF Silent p.N505N 0.10 TCGA-QG-A5Z2-01 22 21402200 21402200 A G AC002472.13 Missense_Mutation p.S104G 0.21 deleterious(0.01) benign(0.036) TCGA-QG-A5Z2-01 22 22697580 22697580 C A IGLV9-49 Missense_Mutation p.A2D 0.07 deleterious(0.05) probably_damaging(0.991) TCGA-QG-A5Z2-01 22 23406298 23406298 G T RTDR1 Silent p.I145I 0.07 TCGA-QG-A5Z2-01 22 24159023 24159023 C T SMARCB1 Missense_Mutation p.T232M 0.17 deleterious(0.05) benign(0.425) TCGA-QG-A5Z2-01 22 24459441 24459441 T C CABIN1 Silent p.P572P 0.08 TCGA-QG-A5Z2-01 22 26299658 26299658 C T MYO18B Missense_Mutation p.R1670W 0.26 deleterious(0) possibly_damaging(0.888) TCGA-QG-A5Z2-01 22 29445370 29445370 C T ZNRF3 Missense_Mutation p.R401W 0.16 deleterious(0) possibly_damaging(0.836) TCGA-QG-A5Z2-01 22 31485922 31485922 C - SMTN Frame_Shift_Del p.S239Afs*118 0.15 TCGA-QG-A5Z2-01 22 32630893 32630893 G A SLC5A4 Silent p.P284P 0.10 TCGA-QG-A5Z2-01 22 36054996 36054996 A G APOL6 Missense_Mutation p.T129A 0.29 tolerated(0.1) benign(0.007) TCGA-QG-A5Z2-01 22 36661253 36661253 T C APOL1 Missense_Mutation p.M140T 0.09 tolerated(0.59) benign(0.041) TCGA-QG-A5Z2-01 22 36960888 36960888 G A CACNG2 Missense_Mutation p.A161V 0.28 tolerated(0.23) benign(0.308) TCGA-QG-A5Z2-01 22 38049793 38049793 T C SH3BP1 Missense_Mutation p.S536P 0.22 tolerated(0.43) benign(0.006) TCGA-QG-A5Z2-01 22 38370125 38370125 C T SOX10 Missense_Mutation p.G260R 0.23 deleterious(0.04) probably_damaging(0.946) TCGA-QG-A5Z2-01 22 38695925 38695925 G A CSNK1E Silent p.I237I 0.21 TCGA-QG-A5Z2-01 22 39175561 39175561 C T DNAL4 Missense_Mutation p.V71M 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-QG-A5Z2-01 22 40661865 40661865 A G TNRC6B Missense_Mutation p.H544R 0.30 tolerated(0.4) probably_damaging(0.992) TCGA-QG-A5Z2-01 22 41650387 41650387 T C RANGAP1 Silent p.E395E 0.08 TCGA-QG-A5Z2-01 22 41763558 41763558 A G TEF Missense_Mutation p.K8E 0.23 deleterious(0) possibly_damaging(0.579) TCGA-QG-A5Z2-01 22 43089592 43089592 G T A4GALT Silent p.A122A 0.18 TCGA-QG-A5Z2-01 22 44681530 44681530 T C KIAA1644 Missense_Mutation p.D126G 0.27 deleterious(0.03) benign(0.201) TCGA-QG-A5Z2-01 22 47859119 47859119 T C LL22NC03-75H12.2 Silent p.A23A 0.10 TCGA-QG-A5Z2-01 22 50728164 50728164 C T PLXNB2 Missense_Mutation p.V284M 0.11 tolerated(0.15) possibly_damaging(0.808) TCGA-QG-A5Z2-01 22 50879307 50879307 C T PPP6R2 Silent p.L785L 0.14 TCGA-QG-A5Z2-01 22 50987379 50987379 C T KLHDC7B Missense_Mutation p.R262W 0.44 deleterious(0) possibly_damaging(0.816) TCGA-QG-A5Z2-01 2 100925582 100925582 G T LONRF2 Missense_Mutation p.P262H 0.20 deleterious(0.02) probably_damaging(0.977) TCGA-QG-A5Z2-01 2 101549387 101549387 C T NPAS2 Missense_Mutation p.T66M 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-QG-A5Z2-01 2 102014015 102014015 C T RFX8 Missense_Mutation p.V473M 0.10 tolerated_low_confidence(0.74) benign(0.013) TCGA-QG-A5Z2-01 2 102507828 102507828 C T MAP4K4 3'Flank 0.29 TCGA-QG-A5Z2-01 2 102818041 102818041 G A IL1RL2 Missense_Mutation p.R172Q 0.34 tolerated(0.07) benign(0.073) TCGA-QG-A5Z2-01 2 103236429 103236429 G - SLC9A2 Frame_Shift_Del p.A42Pfs*66 0.27 TCGA-QG-A5Z2-01 2 107459881 107459881 C T ST6GAL2 Missense_Mutation p.V185M 0.17 benign(0.003) TCGA-QG-A5Z2-01 2 108476243 108476243 A - RGPD4 Frame_Shift_Del p.K568Nfs*33 0.12 TCGA-QG-A5Z2-01 2 113416887 113416887 C T SLC20A1 Silent p.S385S 0.10 TCGA-QG-A5Z2-01 2 11726005 11726005 G A GREB1 Missense_Mutation p.C378Y 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-QG-A5Z2-01 2 11774317 11774317 G A GREB1 Silent p.A1684A 0.10 TCGA-QG-A5Z2-01 2 122139883 122139883 C T CLASP1 Missense_Mutation p.S1131N 0.25 tolerated_low_confidence(0.12) benign(0.107) TCGA-QG-A5Z2-01 2 125671965 125671965 G A CNTNAP5 3'UTR 0.32 TCGA-QG-A5Z2-01 2 130832848 130832848 A G POTEF Missense_Mutation p.S733P 0.05 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-QG-A5Z2-01 2 131522112 131522112 G - AMER3 Frame_Shift_Del p.V825Sfs*58 0.13 TCGA-QG-A5Z2-01 2 131797730 131797730 C T ARHGEF4 Missense_Mutation p.R297W 0.09 deleterious(0.01) benign(0.391) TCGA-QG-A5Z2-01 2 131810547 131810547 G - FAM168B Frame_Shift_Del p.H173Tfs*63 0.15 TCGA-QG-A5Z2-01 2 132290335 132290335 A G CCDC74A Missense_Mutation p.N286S 0.25 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 2 136873097 136873097 C T CXCR4 Missense_Mutation p.R138H 0.17 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 2 145147376 145147376 C T ZEB2 Missense_Mutation p.R1096H 0.11 tolerated(0.13) possibly_damaging(0.893) TCGA-QG-A5Z2-01 2 145157738 145157738 G T ZEB2 Missense_Mutation p.S339Y 0.34 deleterious(0.02) possibly_damaging(0.883) TCGA-QG-A5Z2-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.60 TCGA-QG-A5Z2-01 2 152387554 152387554 G A NEB Missense_Mutation p.T7195I 0.25 probably_damaging(1) TCGA-QG-A5Z2-01 2 152436112 152436112 G A NEB Missense_Mutation p.R5482C 0.23 probably_damaging(0.92) TCGA-QG-A5Z2-01 2 154335165 154335165 G C RPRM 5'UTR 0.22 TCGA-QG-A5Z2-01 2 155555706 155555706 C T KCNJ3 Missense_Mutation p.T140M 0.11 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 2 15614289 15614289 G A NBAS Nonsense_Mutation p.R501* 0.22 TCGA-QG-A5Z2-01 2 160843678 160843678 T G PLA2R1 Missense_Mutation p.S676R 0.25 tolerated(0.13) probably_damaging(0.924) TCGA-QG-A5Z2-01 2 1651983 1651983 T - PXDN Frame_Shift_Del p.N1190Mfs*12 0.18 TCGA-QG-A5Z2-01 2 1653169 1653169 G A PXDN Missense_Mutation p.P795S 0.06 tolerated(0.11) probably_damaging(0.994) TCGA-QG-A5Z2-01 2 169780331 169780331 G A ABCB11 Missense_Mutation p.T1256M 0.17 tolerated(0.05) benign(0.149) TCGA-QG-A5Z2-01 2 169830237 169830237 G T ABCB11 Silent p.P474P 0.22 TCGA-QG-A5Z2-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.12 TCGA-QG-A5Z2-01 2 17906609 17906609 G A SMC6 Missense_Mutation p.T214M 0.32 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 2 179404631 179404631 C T TTN Missense_Mutation p.V32721I 0.10 TCGA-QG-A5Z2-01 2 179428326 179428326 C A TTN Missense_Mutation p.K27511N 0.12 TCGA-QG-A5Z2-01 2 179448607 179448607 C T TTN Missense_Mutation p.D21768N 0.19 TCGA-QG-A5Z2-01 2 179571204 179571204 G A TTN Silent p.G9799G 0.17 TCGA-QG-A5Z2-01 2 179588778 179588778 A G TTN Missense_Mutation p.S7070P 0.37 TCGA-QG-A5Z2-01 2 179600640 179600640 C T TTN Missense_Mutation p.D4845N 0.23 TCGA-QG-A5Z2-01 2 179611798 179611798 G - TTN Intron 0.25 TCGA-QG-A5Z2-01 2 183050621 183050621 T C PDE1A Missense_Mutation p.Q521R 0.09 tolerated(0.05) benign(0.211) TCGA-QG-A5Z2-01 2 189859046 189859046 G A COL3A1 Silent p.L427L 0.38 TCGA-QG-A5Z2-01 2 190334876 190334876 G T WDR75 Nonsense_Mutation p.G632* 0.09 TCGA-QG-A5Z2-01 2 197656174 197656174 G T GTF3C3 Missense_Mutation p.P141H 0.09 tolerated(0.33) benign(0.038) TCGA-QG-A5Z2-01 2 204306051 204306051 G T RAPH1 Missense_Mutation p.A621D 0.15 benign(0.283) TCGA-QG-A5Z2-01 2 204736166 204736166 T - CTLA4 Frame_Shift_Del p.Y177Ifs*10 0.14 TCGA-QG-A5Z2-01 2 210557942 210557942 A - MAP2 Frame_Shift_Del p.K351Nfs*38 0.22 TCGA-QG-A5Z2-01 2 210786272 210786272 C T UNC80 Missense_Mutation p.H1732Y 0.20 probably_damaging(0.946) TCGA-QG-A5Z2-01 2 219503453 219503453 C T ZNF142 Missense_Mutation p.R1558Q 0.37 tolerated(0.13) benign(0.238) TCGA-QG-A5Z2-01 2 219849826 219849826 G - FEV 5'UTR 0.27 TCGA-QG-A5Z2-01 2 220034345 220034345 C T SLC23A3 Missense_Mutation p.S73N 0.34 tolerated(0.29) benign(0.005) TCGA-QG-A5Z2-01 2 220164837 220164837 C A PTPRN Missense_Mutation p.A436S 0.26 tolerated(0.14) benign(0.004) TCGA-QG-A5Z2-01 2 220356892 220356893 - G SPEG Frame_Shift_Ins p.R3177Pfs*3 0.18 TCGA-QG-A5Z2-01 2 220366687 220366687 C T GMPPA Silent p.S119S 0.23 TCGA-QG-A5Z2-01 2 220423149 220423149 G A OBSL1 Missense_Mutation p.R1087C 0.21 deleterious(0.01) possibly_damaging(0.841) TCGA-QG-A5Z2-01 2 223158850 223158850 C T PAX3 Intron 0.32 TCGA-QG-A5Z2-01 2 223917820 223917820 C T KCNE4 Missense_Mutation p.S91L 0.12 tolerated(0.06) benign(0.195) TCGA-QG-A5Z2-01 2 225266009 225266009 G A FAM124B Silent p.I159I 0.06 TCGA-QG-A5Z2-01 2 228566967 228566967 C A SLC19A3 Missense_Mutation p.G23V 0.21 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 2 231235625 231235625 G A SP140L Missense_Mutation p.E176K 0.24 deleterious(0.03) benign(0.003) TCGA-QG-A5Z2-01 2 233347833 233347833 A C ECEL1 Silent p.A521A 0.18 TCGA-QG-A5Z2-01 2 233410359 233410359 A G CHRNG Missense_Mutation p.H496R 0.21 tolerated(0.2) benign(0.325) TCGA-QG-A5Z2-01 2 234371086 234371086 G A DGKD Missense_Mutation p.G1025D 0.22 tolerated(0.25) benign(0.028) TCGA-QG-A5Z2-01 2 235404940 235404940 G A ARL4C Silent p.D97D 0.08 TCGA-QG-A5Z2-01 2 235950615 235950616 - A SH3BP4 Frame_Shift_Ins p.N403Kfs*2 0.17 TCGA-QG-A5Z2-01 2 241702688 241702688 C T KIF1A Missense_Mutation p.R615H 0.25 deleterious(0.01) possibly_damaging(0.66) TCGA-QG-A5Z2-01 2 241737143 241737143 C T KIF1A Silent p.A9A 0.19 TCGA-QG-A5Z2-01 2 241992627 241992627 C T SNED1 Missense_Mutation p.T714M 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-QG-A5Z2-01 2 242187497 242187498 - T HDLBP Frame_Shift_Ins p.S551Kfs*2 0.11 TCGA-QG-A5Z2-01 2 242648755 242648755 C A ING5 Nonsense_Mutation p.Y78* 0.22 TCGA-QG-A5Z2-01 2 27322321 27322321 C T KHK Silent p.G229G 0.24 TCGA-QG-A5Z2-01 2 31360999 31360999 C - GALNT14 5'UTR 0.13 TCGA-QG-A5Z2-01 2 33749514 33749514 A - RASGRP3 Frame_Shift_Del p.N237Ifs*5 0.25 TCGA-QG-A5Z2-01 2 38301897 38301897 C T CYP1B1 Missense_Mutation p.C212Y 0.08 deleterious(0.04) possibly_damaging(0.812) TCGA-QG-A5Z2-01 2 42578285 42578285 A T COX7A2L 3'UTR 0.18 TCGA-QG-A5Z2-01 2 44105133 44105133 G T ABCG8 3'UTR 0.21 TCGA-QG-A5Z2-01 2 45236139 45236139 C T SIX2 Silent p.L37L 0.07 TCGA-QG-A5Z2-01 2 48809164 48809164 G A STON1-GTF2A1L Silent p.P464P 0.33 TCGA-QG-A5Z2-01 2 54080761 54080761 C T GPR75 Missense_Mutation p.R378Q 0.22 tolerated(0.14) probably_damaging(0.997) TCGA-QG-A5Z2-01 2 54587685 54587685 A - C2orf73 Frame_Shift_Del p.K285Nfs*17 0.24 TCGA-QG-A5Z2-01 2 54856641 54856641 G A SPTBN1 Silent p.A790A 0.15 TCGA-QG-A5Z2-01 2 55071273 55071273 C T EML6 Nonsense_Mutation p.R313* 0.29 TCGA-QG-A5Z2-01 2 58425763 58425763 A C FANCL Missense_Mutation p.F169C 0.37 deleterious(0) probably_damaging(0.957) TCGA-QG-A5Z2-01 2 60687908 60687908 G A BCL11A Silent p.R713R 0.09 TCGA-QG-A5Z2-01 2 61415065 61415065 T - AHSA2 3'UTR 0.11 TCGA-QG-A5Z2-01 2 62099358 62099358 G A CCT4 Silent p.C450C 0.09 TCGA-QG-A5Z2-01 2 63176060 63176060 C T EHBP1 Silent p.I728I 0.30 TCGA-QG-A5Z2-01 2 63283241 63283241 G A OTX1 Silent p.P285P 0.08 TCGA-QG-A5Z2-01 2 63720054 63720054 A G WDPCP Silent p.H32H 0.12 TCGA-QG-A5Z2-01 2 68882442 68882442 G A PROKR1 Missense_Mutation p.V306M 0.27 tolerated(0.11) benign(0.305) TCGA-QG-A5Z2-01 2 69092911 69092911 A G BMP10 Missense_Mutation p.V376A 0.08 deleterious(0.02) benign(0.127) TCGA-QG-A5Z2-01 2 69092980 69092980 C T BMP10 Missense_Mutation p.R353H 0.10 tolerated(0.18) benign(0.117) TCGA-QG-A5Z2-01 2 7027234 7027234 G A RSAD2 Missense_Mutation p.R226H 0.30 deleterious(0.04) probably_damaging(0.973) TCGA-QG-A5Z2-01 2 71622543 71622543 T G ZNF638 Intron 0.19 TCGA-QG-A5Z2-01 2 71738979 71738979 G A DYSF Missense_Mutation p.A130T 0.36 deleterious(0.03) benign(0.007) TCGA-QG-A5Z2-01 2 74659711 74659711 C T RTKN Missense_Mutation p.R65Q 0.24 deleterious(0) probably_damaging(0.99) TCGA-QG-A5Z2-01 2 74753897 74753897 G A AUP1 3'UTR 0.16 TCGA-QG-A5Z2-01 2 74762526 74762526 C T LOXL3 Missense_Mutation p.R491H 0.24 tolerated(0.35) benign(0.015) TCGA-QG-A5Z2-01 2 74784006 74784006 C T DOK1 Missense_Mutation p.P404L 0.38 deleterious(0) probably_damaging(0.937) TCGA-QG-A5Z2-01 2 77746137 77746137 G T LRRTM4 Silent p.S286S 0.24 TCGA-QG-A5Z2-01 2 85024771 85024771 C A DNAH6 Missense_Mutation p.L3824I 0.12 tolerated(1) benign(0.01) TCGA-QG-A5Z2-01 2 96048169 96048169 C T KCNIP3 Silent p.R200R 0.27 TCGA-QG-A5Z2-01 2 96049836 96049836 C - KCNIP3 3'UTR 0.27 TCGA-QG-A5Z2-01 2 96260831 96260831 A - TRIM43 Frame_Shift_Del p.K150Rfs*29 0.10 TCGA-QG-A5Z2-01 2 96781783 96781783 C T ADRA2B Missense_Mutation p.A36T 0.23 deleterious(0) probably_damaging(0.977) TCGA-QG-A5Z2-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.33 TCGA-QG-A5Z2-01 2 97779447 97779447 G A ANKRD36 5'UTR 0.31 TCGA-QG-A5Z2-01 2 97869963 97869963 A C ANKRD36 Silent p.I1008I 0.30 TCGA-QG-A5Z2-01 2 99204016 99204016 C T INPP4A Missense_Mutation p.A960V 0.42 deleterious(0.02) possibly_damaging(0.492) TCGA-QG-A5Z2-01 2 99995545 99995545 G A EIF5B Missense_Mutation p.V636I 0.12 probably_damaging(0.995) TCGA-QG-A5Z2-01 3 100086934 100086934 T C TOMM70A Missense_Mutation p.K543E 0.30 deleterious(0.01) probably_damaging(0.962) TCGA-QG-A5Z2-01 3 101540574 101540574 G A NXPE3 Missense_Mutation p.A486T 0.16 tolerated(0.34) benign(0.033) TCGA-QG-A5Z2-01 3 108095367 108095367 G A HHLA2 Missense_Mutation p.R396H 0.12 tolerated_low_confidence(0.26) benign(0) TCGA-QG-A5Z2-01 3 112738422 112738422 C T C3orf17 Missense_Mutation p.A25T 0.09 tolerated(1) benign(0.006) TCGA-QG-A5Z2-01 3 113373688 113373689 AC - KIAA2018 3'UTR 0.24 TCGA-QG-A5Z2-01 3 118621638 118621638 C T IGSF11 Missense_Mutation p.G342D 0.28 tolerated(0.31) benign(0.03) TCGA-QG-A5Z2-01 3 1189747 1189747 G T CNTN6 Missense_Mutation p.G19C 0.38 deleterious(0.01) possibly_damaging(0.479) TCGA-QG-A5Z2-01 3 119120928 119120928 C T ARHGAP31 Silent p.S443S 0.14 TCGA-QG-A5Z2-01 3 119155681 119155681 G A TMEM39A Nonsense_Mutation p.Q357* 0.05 TCGA-QG-A5Z2-01 3 121573568 121573569 - A EAF2 Frame_Shift_Ins p.P82Tfs*11 0.23 TCGA-QG-A5Z2-01 3 122645451 122645451 G A SEMA5B Silent p.H362H 0.34 TCGA-QG-A5Z2-01 3 123213736 123213736 T C PTPLB Nonstop_Mutation p.*255Wext*33 0.21 TCGA-QG-A5Z2-01 3 129268194 129268194 C T H1FOO Silent p.S243S 0.07 TCGA-QG-A5Z2-01 3 129284352 129284352 G A PLXND1 Missense_Mutation p.A1451V 0.15 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 3 129290353 129290353 G A PLXND1 Missense_Mutation p.T1112M 0.21 tolerated(0.08) benign(0.188) TCGA-QG-A5Z2-01 3 129290668 129290668 C T PLXND1 Missense_Mutation p.A1033T 0.04 tolerated(0.96) benign(0.001) TCGA-QG-A5Z2-01 3 133377884 133377884 G A TOPBP1 Silent p.G65G 0.08 TCGA-QG-A5Z2-01 3 134967203 134967203 G A EPHB1 Missense_Mutation p.D848N 0.27 tolerated(0.14) probably_damaging(0.964) TCGA-QG-A5Z2-01 3 140406707 140406707 A G TRIM42 Missense_Mutation p.M395V 0.08 tolerated(0.17) benign(0.026) TCGA-QG-A5Z2-01 3 148459070 148459070 T C AGTR1 Missense_Mutation p.L83P 0.26 deleterious(0) possibly_damaging(0.904) TCGA-QG-A5Z2-01 3 150377861 150377861 G A FAM194A Missense_Mutation p.R604C 0.34 deleterious(0) probably_damaging(0.995) TCGA-QG-A5Z2-01 3 152163270 152163270 C T MBNL1 Missense_Mutation p.A250V 0.07 deleterious(0.01) benign(0.358) TCGA-QG-A5Z2-01 3 152883864 152883864 T G RAP2B 3'UTR 0.10 TCGA-QG-A5Z2-01 3 154018864 154018864 G A DHX36 Nonsense_Mutation p.Q424* 0.19 TCGA-QG-A5Z2-01 3 15563198 15563198 C T COLQ 5'UTR 0.16 TCGA-QG-A5Z2-01 3 15712045 15712045 G A ANKRD28 Missense_Mutation p.A965V 0.10 deleterious(0.01) possibly_damaging(0.899) TCGA-QG-A5Z2-01 3 160786629 160786629 G T PPM1L Missense_Mutation p.R256M 0.22 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 3 165547795 165547795 T - BCHE Frame_Shift_Del p.T343Pfs*16 0.23 TCGA-QG-A5Z2-01 3 170884962 170884962 C T TNIK Missense_Mutation p.D291N 0.25 tolerated(0.07) unknown(0) TCGA-QG-A5Z2-01 3 172165558 172165558 C T GHSR Missense_Mutation p.V216M 0.05 deleterious(0.03) benign(0.314) TCGA-QG-A5Z2-01 3 17255753 17255753 A - TBC1D5 Frame_Shift_Del p.F588Lfs*23 0.18 TCGA-QG-A5Z2-01 3 183996277 183996277 C A ECE2 Intron 0.18 TCGA-QG-A5Z2-01 3 184010144 184010144 C - ECE2 3'UTR 0.21 TCGA-QG-A5Z2-01 3 184026292 184026292 C T PSMD2 Silent p.P827P 0.31 TCGA-QG-A5Z2-01 3 184026579 184026579 C T PSMD2 Silent p.H876H 0.11 TCGA-QG-A5Z2-01 3 185969634 185969634 G A DGKG Missense_Mutation p.H559Y 0.06 tolerated(0.5) benign(0.001) TCGA-QG-A5Z2-01 3 193007744 193007744 A G ATP13A5 Missense_Mutation p.C985R 0.21 deleterious(0.01) benign(0.125) TCGA-QG-A5Z2-01 3 193220382 193220382 A C ATP13A4 Missense_Mutation p.L94R 0.10 deleterious(0.01) probably_damaging(0.914) TCGA-QG-A5Z2-01 3 194180664 194180664 C T ATP13A3 Missense_Mutation p.V88I 0.23 tolerated(0.45) benign(0.003) TCGA-QG-A5Z2-01 3 33114035 33114035 C T GLB1 Splice_Site p.X82_splice 0.12 TCGA-QG-A5Z2-01 3 36874723 36874723 A - TRANK1 Frame_Shift_Del p.F2073Lfs*13 0.10 TCGA-QG-A5Z2-01 3 38050533 38050533 C T PLCD1 Missense_Mutation p.V596M 0.09 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 3 39307469 39307469 C T CX3CR1 Missense_Mutation p.D210N 0.18 tolerated(0.38) benign(0.013) TCGA-QG-A5Z2-01 3 42264606 42264606 C T TRAK1 Missense_Mutation p.R747W 0.16 deleterious(0) possibly_damaging(0.906) TCGA-QG-A5Z2-01 3 44490229 44490231 CTC - ZNF445 In_Frame_Del p.G311del 0.09 TCGA-QG-A5Z2-01 3 44776135 44776135 A G ZNF501 Silent p.G74G 0.11 TCGA-QG-A5Z2-01 3 45077326 45077326 C T CLEC3B Silent p.C173C 0.23 TCGA-QG-A5Z2-01 3 46062685 46062685 C T XCR1 Missense_Mutation p.R252Q 0.32 tolerated(0.29) benign(0.004) TCGA-QG-A5Z2-01 3 47043736 47043736 T - NBEAL2 Frame_Shift_Del p.C1705Vfs*45 0.27 TCGA-QG-A5Z2-01 3 47162123 47162123 G A SETD2 Missense_Mutation p.R1335C 0.27 deleterious(0) possibly_damaging(0.708) TCGA-QG-A5Z2-01 3 48200537 48200537 G A CDC25A Silent p.H491H 0.14 TCGA-QG-A5Z2-01 3 48453665 48453665 A C PLXNB1 Missense_Mutation p.C1694W 0.10 deleterious(0) probably_damaging(0.997) TCGA-QG-A5Z2-01 3 48474261 48474261 G T CCDC51 Missense_Mutation p.L265I 0.08 tolerated(0.2) probably_damaging(0.982) TCGA-QG-A5Z2-01 3 48625809 48625809 C T COL7A1 Silent p.T872T 0.25 TCGA-QG-A5Z2-01 3 48731511 48731511 C T IP6K2 Intron 0.07 TCGA-QG-A5Z2-01 3 49145894 49145894 G - USP19 3'Flank 0.18 TCGA-QG-A5Z2-01 3 49395260 49395261 TA - GPX1 Intron 0.22 TCGA-QG-A5Z2-01 3 49719319 49719319 G - APEH Splice_Site p.X509_splice 0.09 TCGA-QG-A5Z2-01 3 49724902 49724902 C T MST1 Missense_Mutation p.R122Q 0.36 deleterious(0.03) benign(0.263) TCGA-QG-A5Z2-01 3 49841761 49841763 GAG - FAM212A In_Frame_Del p.E73del 0.32 TCGA-QG-A5Z2-01 3 50150926 50150926 A - RBM5 Frame_Shift_Del p.E524Rfs*28 0.11 TCGA-QG-A5Z2-01 3 50327467 50327467 C T IFRD2 Missense_Mutation p.V211M 0.33 deleterious(0) possibly_damaging(0.771) TCGA-QG-A5Z2-01 3 50332379 50332379 G A HYAL3 Missense_Mutation p.R219C 0.24 deleterious(0.03) probably_damaging(0.932) TCGA-QG-A5Z2-01 3 50332383 50332383 G A HYAL3 Silent p.T217T 0.23 TCGA-QG-A5Z2-01 3 50334401 50334401 C T NAT6 Missense_Mutation p.R187Q 0.44 tolerated(0.46) benign(0.016) TCGA-QG-A5Z2-01 3 50337801 50337801 G A HYAL1 3'UTR 0.19 TCGA-QG-A5Z2-01 3 50357841 50357841 G A HYAL2 Missense_Mutation p.A27V 0.25 tolerated(0.28) benign(0.008) TCGA-QG-A5Z2-01 3 51246252 51246252 G A DOCK3 Missense_Mutation p.R362Q 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-QG-A5Z2-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.26 TCGA-QG-A5Z2-01 3 51982433 51982433 C T PARP3 Silent p.S520S 0.17 TCGA-QG-A5Z2-01 3 52255836 52255836 C T TLR9 Silent p.V986V 0.21 TCGA-QG-A5Z2-01 3 52282379 52282379 G A PPM1M Missense_Mutation p.G63D 0.22 tolerated(0.23) benign(0.012) TCGA-QG-A5Z2-01 3 52941667 52941667 T - SFMBT1 Frame_Shift_Del p.A664Pfs*50 0.09 TCGA-QG-A5Z2-01 3 54919331 54919331 G A CACNA2D3 Missense_Mutation p.D646N 0.08 tolerated(0.19) probably_damaging(0.995) TCGA-QG-A5Z2-01 3 54959089 54959089 G A LRTM1 Missense_Mutation p.T54M 0.35 tolerated(0.09) benign(0.073) TCGA-QG-A5Z2-01 3 57440511 57440511 G A DNAH12 Silent p.G1126G 0.31 TCGA-QG-A5Z2-01 3 62268429 62268429 T - PTPRG Frame_Shift_Del p.Q1315Sfs*12 0.13 TCGA-QG-A5Z2-01 3 66421712 66421712 C T SLC25A26 Intron 0.42 TCGA-QG-A5Z2-01 3 68466493 68466493 G A FAM19A1 Missense_Mutation p.R61Q 0.31 tolerated(0.07) probably_damaging(0.992) TCGA-QG-A5Z2-01 3 68782248 68782248 C T FAM19A4 3'UTR 0.26 TCGA-QG-A5Z2-01 3 69265418 69265418 C T FRMD4B Missense_Mutation p.R291Q 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-QG-A5Z2-01 3 9880756 9880756 C T RPUSD3 Missense_Mutation p.R275Q 0.09 tolerated(0.18) benign(0.014) TCGA-QG-A5Z2-01 3 99569088 99569088 G A FILIP1L Missense_Mutation p.R478W 0.07 deleterious(0) possibly_damaging(0.834) TCGA-QG-A5Z2-01 3 9971783 9971783 T G IL17RC Missense_Mutation p.C481G 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-QG-A5Z2-01 4 100522824 100522824 G A MTTP Missense_Mutation p.G433R 0.26 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 4 107956621 107956621 C T DKK2 Missense_Mutation p.G43D 0.17 tolerated(0.54) benign(0.185) TCGA-QG-A5Z2-01 4 108999480 108999480 G A LEF1 Missense_Mutation p.P302S 0.06 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.26 TCGA-QG-A5Z2-01 4 122854004 122854004 T C TRPC3 Missense_Mutation p.T137A 0.15 tolerated(0.54) benign(0.232) TCGA-QG-A5Z2-01 4 128854145 128854145 A - MFSD8 Frame_Shift_Del p.F286Lfs*8 0.15 TCGA-QG-A5Z2-01 4 129783355 129783355 C T JADE1 Missense_Mutation p.T493M 0.20 tolerated(0.31) benign(0.372) TCGA-QG-A5Z2-01 4 134084286 134084286 T C PCDH10 Silent p.T984T 0.08 TCGA-QG-A5Z2-01 4 13582822 13582822 G A BOD1L1 Missense_Mutation p.P2868S 0.11 probably_damaging(1) TCGA-QG-A5Z2-01 4 141555313 141555313 G A TBC1D9 Silent p.G845G 0.11 TCGA-QG-A5Z2-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.09 TCGA-QG-A5Z2-01 4 151177248 151177248 C A DCLK2 Missense_Mutation p.P734H 0.12 tolerated_low_confidence(0.12) unknown(0) TCGA-QG-A5Z2-01 4 155219801 155219801 G A DCHS2 Missense_Mutation p.R1434C 0.06 deleterious(0.03) benign(0.133) TCGA-QG-A5Z2-01 4 174213422 174213422 A C GALNT7 Missense_Mutation p.K251Q 0.08 deleterious(0) probably_damaging(0.988) TCGA-QG-A5Z2-01 4 177713379 177713379 G A VEGFC Silent p.A29A 0.24 TCGA-QG-A5Z2-01 4 186578722 186578722 C T SORBS2 Silent p.A141A 0.24 TCGA-QG-A5Z2-01 4 187557895 187557895 A T FAT1 Nonsense_Mutation p.Y1272* 0.06 TCGA-QG-A5Z2-01 4 20734379 20734379 G A KCNIP4 Silent p.Y189Y 0.25 TCGA-QG-A5Z2-01 4 22475393 22475393 A G GPR125 Splice_Site p.X110_splice 0.29 TCGA-QG-A5Z2-01 4 30723455 30723455 C T PCDH7 Silent p.N137N 0.29 TCGA-QG-A5Z2-01 4 367382 367382 A - ZNF141 Frame_Shift_Del p.I388Ffs*51 0.09 TCGA-QG-A5Z2-01 4 38829827 38829827 T - TLR6 Frame_Shift_Del p.N423Tfs*8 0.08 TCGA-QG-A5Z2-01 4 38945137 38945137 G A FAM114A1 Missense_Mutation p.V551I 0.06 tolerated(1) benign(0.014) TCGA-QG-A5Z2-01 4 40103848 40103849 - A N4BP2 Frame_Shift_Ins p.M130Nfs*11 0.17 TCGA-QG-A5Z2-01 4 40245195 40245195 C T RHOH Silent p.D63D 0.37 TCGA-QG-A5Z2-01 4 40947068 40947068 T C APBB2 Silent p.S286S 0.29 TCGA-QG-A5Z2-01 4 42580377 42580377 T A ATP8A1 Missense_Mutation p.N343I 0.30 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 4 47033535 47033535 G A GABRB1 5'UTR 0.25 TCGA-QG-A5Z2-01 4 47548923 47548925 ATG - ATP10D Intron 0.41 TCGA-QG-A5Z2-01 4 5053615 5053615 C - STK32B Frame_Shift_Del p.V11Cfs*41 0.25 TCGA-QG-A5Z2-01 4 5567063 5567063 G A EVC2 Missense_Mutation p.A1194V 0.06 tolerated(0.14) benign(0.091) TCGA-QG-A5Z2-01 4 5570342 5570342 G A EVC2 Missense_Mutation p.A1129V 0.13 tolerated(1) benign(0.037) TCGA-QG-A5Z2-01 4 68385146 68385146 T - CENPC Frame_Shift_Del p.I136Yfs*6 0.11 TCGA-QG-A5Z2-01 4 68693227 68693227 G T TMPRSS11D Missense_Mutation p.P235H 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-QG-A5Z2-01 4 71255725 71255725 A T SMR3B 3'UTR 0.25 TCGA-QG-A5Z2-01 4 71648820 71648820 A G RUFY3 Missense_Mutation p.N303D 0.27 tolerated(0.12) possibly_damaging(0.886) TCGA-QG-A5Z2-01 4 71698841 71698841 C T GRSF1 Missense_Mutation p.V222M 0.11 deleterious(0.03) possibly_damaging(0.81) TCGA-QG-A5Z2-01 4 76489342 76489342 C T C4orf26 Missense_Mutation p.R44C 0.25 deleterious_low_confidence(0.04) benign(0.001) TCGA-QG-A5Z2-01 4 76957145 76957146 - T CXCL11 5'UTR 0.25 TCGA-QG-A5Z2-01 4 77201475 77201475 G - FAM47E Frame_Shift_Del p.G363Afs*26 0.16 TCGA-QG-A5Z2-01 4 8229708 8229708 G A SH3TC1 Missense_Mutation p.A763T 0.09 tolerated(0.64) benign(0.058) TCGA-QG-A5Z2-01 4 83294683 83294688 CCGCCC - HNRNPD In_Frame_Del p.G49_G50del 0.18 TCGA-QG-A5Z2-01 4 88046227 88046227 A T AFF1 Missense_Mutation p.R835S 0.09 deleterious(0) unknown(0) TCGA-QG-A5Z2-01 4 88583633 88583633 G A DMP1 Missense_Mutation p.A235T 0.18 tolerated(0.15) benign(0.223) TCGA-QG-A5Z2-01 4 89408247 89408247 G A HERC5 Missense_Mutation p.V627I 0.30 tolerated(0.23) probably_damaging(0.988) TCGA-QG-A5Z2-01 4 92519977 92519977 C T CCSER1 Silent p.T824T 0.23 TCGA-QG-A5Z2-01 4 95170807 95170807 A G SMARCAD1 Silent p.G236G 0.09 TCGA-QG-A5Z2-01 5 102612501 102612501 A - C5orf30 3'UTR 0.25 TCGA-QG-A5Z2-01 5 110439493 110439493 C T WDR36 Silent p.A258A 0.05 TCGA-QG-A5Z2-01 5 112164586 112164586 C T APC Nonsense_Mutation p.R554* 0.31 TCGA-QG-A5Z2-01 5 11364843 11364843 G A CTNND2 Missense_Mutation p.P446L 0.08 tolerated(0.59) benign(0.001) TCGA-QG-A5Z2-01 5 118484601 118484601 C T DMXL1 Missense_Mutation p.P1027S 0.07 tolerated(0.11) probably_damaging(0.94) TCGA-QG-A5Z2-01 5 122425740 122425740 G A PRDM6 Missense_Mutation p.A11T 0.18 deleterious_low_confidence(0) unknown(0) TCGA-QG-A5Z2-01 5 122491656 122491656 C T PRDM6 Nonsense_Mutation p.R327* 0.15 TCGA-QG-A5Z2-01 5 122506651 122506651 A - PRDM6 Frame_Shift_Del p.N450Tfs*67 0.22 TCGA-QG-A5Z2-01 5 122718708 122718708 C T CEP120 Missense_Mutation p.R611H 0.12 tolerated(0.24) benign(0.022) TCGA-QG-A5Z2-01 5 126860255 126860255 T A PRRC1 Missense_Mutation p.S46T 0.24 tolerated_low_confidence(0.36) benign(0.011) TCGA-QG-A5Z2-01 5 129241121 129241121 C T CHSY3 Missense_Mutation p.P200L 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-QG-A5Z2-01 5 131944382 131944382 A - RAD50 Frame_Shift_Del p.N934Ifs*6 0.27 TCGA-QG-A5Z2-01 5 134194761 134194762 - A C5orf24 3'UTR 0.21 TCGA-QG-A5Z2-01 5 134332032 134332032 A G CATSPER3 Missense_Mutation p.N108D 0.17 tolerated(0.75) benign(0.01) TCGA-QG-A5Z2-01 5 137534337 137534337 C T CDC23 Silent p.S263S 0.30 TCGA-QG-A5Z2-01 5 137537804 137537804 A G CDC23 Missense_Mutation p.L138S 0.26 tolerated(0.55) benign(0.038) TCGA-QG-A5Z2-01 5 138650386 138650386 G A MATR3 Missense_Mutation p.G312E 0.08 tolerated(0.07) probably_damaging(0.997) TCGA-QG-A5Z2-01 5 139060144 139060144 C T CXXC5 Silent p.G12G 0.29 TCGA-QG-A5Z2-01 5 140188796 140188796 C T PCDHA4 Missense_Mutation p.A675V 0.18 tolerated_low_confidence(0.11) benign(0.005) TCGA-QG-A5Z2-01 5 140201443 140201443 G T PCDHA5 Missense_Mutation p.G28V 0.09 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-QG-A5Z2-01 5 140209852 140209852 C T PCDHA6 Missense_Mutation p.P726S 0.22 tolerated_low_confidence(0.11) benign(0.043) TCGA-QG-A5Z2-01 5 140221802 140221802 C T PCDHA8 Missense_Mutation p.T299M 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-QG-A5Z2-01 5 140555301 140555301 T C PCDHB7 3'UTR 0.16 TCGA-QG-A5Z2-01 5 140555604 140555604 G A PCDHB7 3'UTR 0.27 TCGA-QG-A5Z2-01 5 140731680 140731680 G A PCDHGB1 Missense_Mutation p.R618H 0.08 tolerated(0.78) possibly_damaging(0.458) TCGA-QG-A5Z2-01 5 140764698 140764698 C T PCDHGA7 Silent p.D744D 0.27 TCGA-QG-A5Z2-01 5 140794754 140794754 G T PCDHGA10 Missense_Mutation p.S671I 0.28 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-QG-A5Z2-01 5 141019467 141019467 A C FCHSD1 3'UTR 0.27 TCGA-QG-A5Z2-01 5 141318099 141318099 C T KIAA0141 Silent p.S441S 0.27 TCGA-QG-A5Z2-01 5 149310620 149310620 C T PDE6A Missense_Mutation p.V277M 0.19 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 5 149501588 149501588 G A PDGFRB Silent p.T733T 0.25 TCGA-QG-A5Z2-01 5 149619279 149619279 G A CAMK2A Silent p.S335S 0.06 TCGA-QG-A5Z2-01 5 149743745 149743745 G A TCOF1 Silent p.V78V 0.05 TCGA-QG-A5Z2-01 5 150484837 150484837 A T ANXA6 Missense_Mutation p.F603Y 0.15 tolerated(1) benign(0.196) TCGA-QG-A5Z2-01 5 150858993 150858993 G A SLC36A1 Missense_Mutation p.E368K 0.06 tolerated(0.26) benign(0.02) TCGA-QG-A5Z2-01 5 151784553 151784553 C T NMUR2 Missense_Mutation p.R41H 0.28 deleterious(0.02) probably_damaging(0.929) TCGA-QG-A5Z2-01 5 156819960 156819960 G A CYFIP2 Silent p.V1212V 0.32 TCGA-QG-A5Z2-01 5 157078404 157078404 G A SOX30 Missense_Mutation p.A228V 0.11 tolerated_low_confidence(0.43) benign(0.009) TCGA-QG-A5Z2-01 5 160753407 160753407 G A GABRB2 Missense_Mutation p.R387W 0.21 deleterious(0.02) benign(0.206) TCGA-QG-A5Z2-01 5 162932624 162932624 T C MAT2B 5'UTR 0.06 TCGA-QG-A5Z2-01 5 169724656 169724656 C T LCP2 5'UTR 0.16 TCGA-QG-A5Z2-01 5 170610222 170610222 A - RANBP17 Frame_Shift_Del p.N641Tfs*35 0.10 TCGA-QG-A5Z2-01 5 170863095 170863095 A G FGF18 Splice_Site p.X24_splice 0.08 TCGA-QG-A5Z2-01 5 17275931 17275931 C T BASP1 Silent p.P202P 0.07 TCGA-QG-A5Z2-01 5 179023627 179023627 C T RUFY1 Silent p.L526L 0.13 TCGA-QG-A5Z2-01 5 179740887 179740887 C T GFPT2 Missense_Mutation p.V451M 0.09 deleterious(0) probably_damaging(0.978) TCGA-QG-A5Z2-01 5 179994114 179994114 T - CNOT6 Frame_Shift_Del p.L251Wfs*2 0.09 TCGA-QG-A5Z2-01 5 1878771 1878771 G A IRX4 Missense_Mutation p.A291V 0.38 tolerated(0.22) benign(0.034) TCGA-QG-A5Z2-01 5 191816 191816 G T LRRC14B Missense_Mutation p.G55W 0.10 deleterious(0) possibly_damaging(0.789) TCGA-QG-A5Z2-01 5 21461894 21461894 A - GUSBP1 Intron 0.15 TCGA-QG-A5Z2-01 5 22078634 22078634 C T CDH12 Missense_Mutation p.R51H 0.30 deleterious(0) probably_damaging(0.996) TCGA-QG-A5Z2-01 5 24487971 24487971 A G CDH10 Missense_Mutation p.L723P 0.18 tolerated(0.26) benign(0.031) TCGA-QG-A5Z2-01 5 2749862 2749862 C T IRX2 Missense_Mutation p.A97T 0.07 tolerated(0.07) probably_damaging(0.996) TCGA-QG-A5Z2-01 5 34033407 34033407 A G C1QTNF3 Splice_Site p.X190_splice 0.08 TCGA-QG-A5Z2-01 5 35068902 35068902 G A PRLR Missense_Mutation p.A255V 0.09 tolerated(0.25) benign(0.015) TCGA-QG-A5Z2-01 5 35867449 35867449 T C IL7R Missense_Mutation p.L88P 0.09 tolerated(0.29) benign(0.031) TCGA-QG-A5Z2-01 5 37196023 37196023 C T C5orf42 Missense_Mutation p.A1250T 0.24 tolerated(0.05) benign(0.014) TCGA-QG-A5Z2-01 5 43173517 43173517 A - ZNF131 Frame_Shift_Del p.G353Efs*26 0.12 TCGA-QG-A5Z2-01 5 53752051 53752051 G T HSPB3 Missense_Mutation p.K144N 0.06 tolerated(0.08) probably_damaging(1) TCGA-QG-A5Z2-01 5 63257088 63257088 G A HTR1A Silent p.A153A 0.17 TCGA-QG-A5Z2-01 5 64483900 64483900 T - ADAMTS6 Frame_Shift_Del p.E952Sfs*89 0.13 TCGA-QG-A5Z2-01 5 65466553 65466553 G A SREK1 Missense_Mutation p.R421Q 0.08 tolerated(0.09) unknown(0) TCGA-QG-A5Z2-01 5 67591008 67591008 G A PIK3R1 Missense_Mutation p.R534Q 0.27 deleterious(0) possibly_damaging(0.665) TCGA-QG-A5Z2-01 5 73163824 73163824 T C ARHGEF28 Missense_Mutation p.V759A 0.05 tolerated(0.12) benign(0.145) TCGA-QG-A5Z2-01 5 73197039 73197039 G A ARHGEF28 Missense_Mutation p.G1335D 0.31 tolerated(0.52) benign(0.019) TCGA-QG-A5Z2-01 5 74046462 74046462 C T GFM2 Missense_Mutation p.R154Q 0.06 tolerated(0.47) probably_damaging(1) TCGA-QG-A5Z2-01 5 76627268 76627268 A G PDE8B Missense_Mutation p.H231R 0.25 tolerated(0.27) benign(0.005) TCGA-QG-A5Z2-01 5 77714615 77714615 G A SCAMP1 Nonsense_Mutation p.W120* 0.12 TCGA-QG-A5Z2-01 5 79026257 79026257 C T CMYA5 Missense_Mutation p.H557Y 0.31 benign(0.014) TCGA-QG-A5Z2-01 5 79029092 79029092 G T CMYA5 Missense_Mutation p.V1502F 0.30 benign(0.363) TCGA-QG-A5Z2-01 5 79034542 79034542 G A CMYA5 Silent p.A3318A 0.12 TCGA-QG-A5Z2-01 5 79616131 79616131 A G SPZ1 Missense_Mutation p.T33A 0.11 tolerated(0.07) benign(0.053) TCGA-QG-A5Z2-01 5 79961030 79961030 G A MSH3 Missense_Mutation p.D143N 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.495) TCGA-QG-A5Z2-01 5 80024730 80024730 C A MSH3 Missense_Mutation p.A505D 0.24 deleterious(0) benign(0.119) TCGA-QG-A5Z2-01 5 82808293 82808293 G A VCAN Intron 0.35 TCGA-QG-A5Z2-01 5 90085647 90085647 G T GPR98 Missense_Mutation p.K4674N 0.17 benign(0.025) TCGA-QG-A5Z2-01 5 93788720 93788720 A - KIAA0825 Frame_Shift_Del p.F767Lfs*27 0.22 TCGA-QG-A5Z2-01 5 94224613 94224613 G A MCTP1 Missense_Mutation p.A635V 0.24 deleterious(0.01) possibly_damaging(0.826) TCGA-QG-A5Z2-01 5 96065367 96065367 A G CAST Missense_Mutation p.N122D 0.29 tolerated(0.3) benign(0.149) TCGA-QG-A5Z2-01 6 105733372 105733372 G A PREP Missense_Mutation p.T513M 0.07 tolerated(0.08) benign(0.266) TCGA-QG-A5Z2-01 6 107392129 107392129 C T BEND3 Missense_Mutation p.R89H 0.38 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-QG-A5Z2-01 6 108616270 108616270 G T LACE1 5'UTR 0.24 TCGA-QG-A5Z2-01 6 109315749 109315749 G A SESN1 Nonsense_Mutation p.R346* 0.12 TCGA-QG-A5Z2-01 6 109771237 109771237 C G MICAL1 Missense_Mutation p.D415H 0.27 deleterious(0) probably_damaging(0.993) TCGA-QG-A5Z2-01 6 109867153 109867153 T C AK9 Missense_Mutation p.N1048D 0.16 tolerated(0.59) benign(0) TCGA-QG-A5Z2-01 6 10990020 10990020 C T ELOVL2 Silent p.P227P 0.28 TCGA-QG-A5Z2-01 6 110301081 110301081 G A GPR6 Missense_Mutation p.A256T 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-QG-A5Z2-01 6 111196351 111196351 G T AMD1 Nonsense_Mutation p.E15* 0.40 TCGA-QG-A5Z2-01 6 111650894 111650894 C T REV3L Silent p.L2694L 0.22 TCGA-QG-A5Z2-01 6 112041026 112041026 G A FYN Missense_Mutation p.R77C 0.21 tolerated(0.12) probably_damaging(0.915) TCGA-QG-A5Z2-01 6 116289758 116289758 A C FRK Missense_Mutation p.L204R 0.29 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 6 116967058 116967058 T - ZUFSP Frame_Shift_Del p.N503Tfs*7 0.27 TCGA-QG-A5Z2-01 6 12089463 12089463 A - HIVEP1 Frame_Shift_Del p.E32Kfs*17 0.09 TCGA-QG-A5Z2-01 6 13287429 13287429 T A TBC1D7 Intron 0.35 TCGA-QG-A5Z2-01 6 13365028 13365028 C T GFOD1 Missense_Mutation p.A374T 0.15 tolerated(0.28) benign(0.01) TCGA-QG-A5Z2-01 6 136476862 136476863 - A PDE7B Frame_Shift_Ins p.T228Nfs*2 0.14 TCGA-QG-A5Z2-01 6 13711306 13711308 CTC - RANBP9 In_Frame_Del p.E144del 0.32 TCGA-QG-A5Z2-01 6 138539074 138539074 T - PBOV1 3'UTR 0.10 TCGA-QG-A5Z2-01 6 143093240 143093240 C A HIVEP2 Missense_Mutation p.R879M 0.31 deleterious(0) probably_damaging(0.994) TCGA-QG-A5Z2-01 6 146755635 146755635 C T GRM1 Silent p.D1096D 0.34 TCGA-QG-A5Z2-01 6 147136187 147136187 G A ADGB Missense_Mutation p.R1613Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 6 149068629 149068629 G - UST Frame_Shift_Del p.G23Afs*88 0.12 TCGA-QG-A5Z2-01 6 149959711 149959711 A - KATNA1 Intron 0.16 TCGA-QG-A5Z2-01 6 151151857 151151857 A G PLEKHG1 Missense_Mutation p.Q537R 0.17 tolerated(0.38) benign(0.101) TCGA-QG-A5Z2-01 6 151336664 151336664 C T MTHFD1L Silent p.R807R 0.10 TCGA-QG-A5Z2-01 6 152129037 152129037 G A ESR1 5'UTR 0.30 TCGA-QG-A5Z2-01 6 152129287 152129287 C T ESR1 Silent p.Y80Y 0.09 TCGA-QG-A5Z2-01 6 152570351 152570351 A G SYNE1 Missense_Mutation p.I6506T 0.29 benign(0.445) TCGA-QG-A5Z2-01 6 155469341 155469341 G A TIAM2 Missense_Mutation p.R634Q 0.08 deleterious(0.02) benign(0.074) TCGA-QG-A5Z2-01 6 155750027 155750027 A - NOX3 Frame_Shift_Del p.F349Sfs*45 0.11 TCGA-QG-A5Z2-01 6 157528452 157528452 G A ARID1B Silent p.P2059P 0.08 TCGA-QG-A5Z2-01 6 158485894 158485894 C T SYNJ2 Nonsense_Mutation p.R466* 0.30 TCGA-QG-A5Z2-01 6 159456996 159456996 C A TAGAP Missense_Mutation p.G687W 0.13 tolerated(0.14) probably_damaging(0.988) TCGA-QG-A5Z2-01 6 160494267 160494267 G C IGF2R Missense_Mutation p.R1571S 0.30 tolerated(0.7) benign(0.118) TCGA-QG-A5Z2-01 6 1613816 1613816 T C FOXC1 3'UTR 0.28 TCGA-QG-A5Z2-01 6 163876397 163876397 G T QKI Nonsense_Mutation p.G77* 0.16 TCGA-QG-A5Z2-01 6 166576104 166576104 C - T Frame_Shift_Del p.W246Gfs*37 0.19 TCGA-QG-A5Z2-01 6 170667380 170667380 T C FAM120B Missense_Mutation p.S753P 0.32 tolerated(0.15) benign(0.072) TCGA-QG-A5Z2-01 6 17281858 17281858 G - RBM24 Frame_Shift_Del p.L18Cfs*66 0.08 TCGA-QG-A5Z2-01 6 17675546 17675546 C A NUP153 Nonsense_Mutation p.E213* 0.13 TCGA-QG-A5Z2-01 6 25801162 25801162 C A SLC17A1 Nonsense_Mutation p.G409* 0.10 TCGA-QG-A5Z2-01 6 26157161 26157161 A - HIST1H1E Frame_Shift_Del p.K183Rfs*46 0.10 TCGA-QG-A5Z2-01 6 27420683 27420684 - T ZNF184 Frame_Shift_Ins p.E219Rfs*5 0.18 TCGA-QG-A5Z2-01 6 29572292 29572292 T A GABBR1 Missense_Mutation p.E897D 0.19 tolerated(0.2) probably_damaging(0.99) TCGA-QG-A5Z2-01 6 30154228 30154228 G - TRIM26 Frame_Shift_Del p.Q349Sfs*10 0.30 TCGA-QG-A5Z2-01 6 30232131 30232131 G A HCG17 Intron 0.20 TCGA-QG-A5Z2-01 6 30954274 30954274 T C MUC21 Missense_Mutation p.S108P 0.07 tolerated(0.21) unknown(0) TCGA-QG-A5Z2-01 6 31323207 31323207 C G HLA-B Missense_Mutation p.G261A 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-QG-A5Z2-01 6 3154124 3154124 C A TUBB2A Missense_Mutation p.E437D 0.09 tolerated_low_confidence(0.39) unknown(0) TCGA-QG-A5Z2-01 6 31612970 31612970 A G BAG6 Silent p.N380N 0.20 TCGA-QG-A5Z2-01 6 31750569 31750569 G A VARS Missense_Mutation p.R606W 0.09 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 6 31795798 31795798 G A HSPA1B Missense_Mutation p.G24D 0.24 tolerated_low_confidence(0.4) probably_damaging(1) TCGA-QG-A5Z2-01 6 31935054 31935054 G A SKIV2L Missense_Mutation p.R828H 0.07 tolerated(0.54) benign(0.004) TCGA-QG-A5Z2-01 6 31973439 31973439 C A C4A 3'Flank 0.15 TCGA-QG-A5Z2-01 6 31996752 31996752 G A C4B Missense_Mutation p.A1140T 0.11 deleterious(0) probably_damaging(0.986) TCGA-QG-A5Z2-01 6 32803087 32803087 C T TAP2 Nonsense_Mutation p.W263* 0.09 TCGA-QG-A5Z2-01 6 32803531 32803531 G A TAP2 Nonsense_Mutation p.R210* 0.19 TCGA-QG-A5Z2-01 6 33139517 33139518 - G COL11A2 Frame_Shift_Ins p.G956Wfs*11 0.08 TCGA-QG-A5Z2-01 6 33655008 33655008 C T ITPR3 Silent p.D2027D 0.09 TCGA-QG-A5Z2-01 6 36175167 36175167 G A BRPF3 Silent p.R561R 0.08 TCGA-QG-A5Z2-01 6 36990104 36990104 C T FGD2 Silent p.N472N 0.10 TCGA-QG-A5Z2-01 6 38854775 38854775 T - DNAH8 Frame_Shift_Del p.F2607Lfs*22 0.26 TCGA-QG-A5Z2-01 6 39877604 39877604 C A MOCS1 Silent p.V359V 0.19 TCGA-QG-A5Z2-01 6 4122194 4122194 A - C6orf201 Frame_Shift_Del p.N101Mfs*8 0.25 TCGA-QG-A5Z2-01 6 42224486 42224489 CAAA - TRERF1 Frame_Shift_Del p.F853Rfs*6 0.32 TCGA-QG-A5Z2-01 6 42936682 42936682 C G PEX6 Missense_Mutation p.G470A 0.32 deleterious(0) probably_damaging(0.951) TCGA-QG-A5Z2-01 6 42976941 42976941 G A PPP2R5D Silent p.K409K 0.08 TCGA-QG-A5Z2-01 6 43106922 43106922 G A PTK7 Missense_Mutation p.V479M 0.05 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 6 43173140 43173140 C T CUL9 Missense_Mutation p.T1591I 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-QG-A5Z2-01 6 43183986 43183986 G A CUL9 Silent p.T2009T 0.17 TCGA-QG-A5Z2-01 6 43322563 43322563 C T ZNF318 Missense_Mutation p.V837M 0.12 possibly_damaging(0.835) TCGA-QG-A5Z2-01 6 53370611 53370611 C T GCLC Missense_Mutation p.R427Q 0.09 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 6 73787567 73787567 A C KCNQ5 Missense_Mutation p.N292T 0.16 deleterious(0.01) possibly_damaging(0.781) TCGA-QG-A5Z2-01 6 7571657 7571657 C T DSP Silent p.A581A 0.07 TCGA-QG-A5Z2-01 6 75890927 75890927 G T COL12A1 Missense_Mutation p.A631D 0.29 benign(0.024) TCGA-QG-A5Z2-01 6 90411335 90411335 C T MDN1 Missense_Mutation p.G2790D 0.32 benign(0.03) TCGA-QG-A5Z2-01 6 91254332 91254332 C A MAP3K7 Silent p.R410R 0.25 TCGA-QG-A5Z2-01 6 96660412 96660412 A - FUT9 3'UTR 0.46 TCGA-QG-A5Z2-01 7 100279999 100279999 T C GIGYF1 Missense_Mutation p.T903A 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-QG-A5Z2-01 7 100364791 100364791 G - ZAN Frame_Shift_Del p.I1593Sfs*12 0.17 TCGA-QG-A5Z2-01 7 100485399 100485399 T - SRRT Frame_Shift_Del p.F750Lfs*32 0.11 TCGA-QG-A5Z2-01 7 102097839 102097839 G A ALKBH4 3'UTR 0.28 TCGA-QG-A5Z2-01 7 102109415 102109415 C T LRWD1 Silent p.H378H 0.42 TCGA-QG-A5Z2-01 7 103162507 103162507 C G RELN Missense_Mutation p.G2544R 0.25 tolerated(0.12) probably_damaging(1) TCGA-QG-A5Z2-01 7 11068445 11068445 G C PHF14 Missense_Mutation p.E485D 0.23 tolerated(0.09) possibly_damaging(0.571) TCGA-QG-A5Z2-01 7 110764613 110764613 T G LRRN3 Missense_Mutation p.I595M 0.09 tolerated(0.09) possibly_damaging(0.661) TCGA-QG-A5Z2-01 7 113519740 113519740 T - PPP1R3A Frame_Shift_Del p.K469Nfs*11 0.23 TCGA-QG-A5Z2-01 7 11447051 11447051 C T THSD7A Splice_Site p.X1267_splice 0.27 TCGA-QG-A5Z2-01 7 124482869 124482869 A G POT1 Silent p.C385C 0.06 TCGA-QG-A5Z2-01 7 127013521 127013521 A C ZNF800 Missense_Mutation p.C623W 0.26 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 7 127013522 127013522 C T ZNF800 Missense_Mutation p.C623Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 7 1273207 1273207 G A UNCX Missense_Mutation p.R109H 0.15 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 7 127669812 127669812 C T LRRC4 Silent p.E294E 0.35 TCGA-QG-A5Z2-01 7 128547425 128547425 G A AC025594.1 3'Flank 0.08 TCGA-QG-A5Z2-01 7 131831343 131831343 C A PLXNA4 Nonsense_Mutation p.G1661* 0.08 TCGA-QG-A5Z2-01 7 135328047 135328047 C T NUP205 Nonsense_Mutation p.R1834* 0.20 TCGA-QG-A5Z2-01 7 138312916 138312916 G A SVOPL Silent p.I352I 0.06 TCGA-QG-A5Z2-01 7 138418909 138418909 C T ATP6V0A4 Missense_Mutation p.G555S 0.06 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 7 138713543 138713543 A G ZC3HAV1L Missense_Mutation p.L222P 0.32 deleterious(0) probably_damaging(0.979) TCGA-QG-A5Z2-01 7 138957093 138957093 A - UBN2 Frame_Shift_Del p.K542Nfs*2 0.13 TCGA-QG-A5Z2-01 7 140386921 140386921 C T ADCK2 Silent p.A479A 0.08 TCGA-QG-A5Z2-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-QG-A5Z2-01 7 142750128 142750128 A C OR6V1 Missense_Mutation p.S231R 0.12 deleterious(0.02) benign(0.045) TCGA-QG-A5Z2-01 7 143530476 143530476 C T RP11-61L23.2 RNA 0.11 TCGA-QG-A5Z2-01 7 150217197 150217197 G T GIMAP7 Missense_Mutation p.K45N 0.22 deleterious(0.01) probably_damaging(0.93) TCGA-QG-A5Z2-01 7 150714250 150714250 G - ATG9B Frame_Shift_Del p.P721Qfs*61 0.14 TCGA-QG-A5Z2-01 7 151873340 151873340 C T KMT2C Silent p.Q3066Q 0.09 TCGA-QG-A5Z2-01 7 151879446 151879446 C T KMT2C Silent p.Q1833Q 0.13 TCGA-QG-A5Z2-01 7 152550593 152550593 G T ACTR3B Missense_Mutation p.E364D 0.07 tolerated(0.81) benign(0.006) TCGA-QG-A5Z2-01 7 15427074 15427074 C - AGMO Frame_Shift_Del p.G305Vfs*31 0.17 TCGA-QG-A5Z2-01 7 154754138 154754138 C T PAXIP1 Missense_Mutation p.A674T 0.26 deleterious(0) unknown(0) TCGA-QG-A5Z2-01 7 1855676 1855676 T C MAD1L1 3'UTR 0.12 TCGA-QG-A5Z2-01 7 20826480 20826480 T - SP8 5'UTR 0.21 TCGA-QG-A5Z2-01 7 21646139 21646140 - A DNAH11 Frame_Shift_Ins p.C1251Mfs*5 0.30 TCGA-QG-A5Z2-01 7 23213659 23213659 C T KLHL7 Silent p.Y501Y 0.07 TCGA-QG-A5Z2-01 7 23306226 23306227 - A GPNMB Frame_Shift_Ins p.I383Nfs*9 0.17 TCGA-QG-A5Z2-01 7 2473222 2473222 G A CHST12 Silent p.A316A 0.12 TCGA-QG-A5Z2-01 7 30915161 30915161 G T FAM188B Missense_Mutation p.D621Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-QG-A5Z2-01 7 31736700 31736700 A G PPP1R17 Silent p.T119T 0.10 TCGA-QG-A5Z2-01 7 32909523 32909523 G A KBTBD2 Silent p.L436L 0.23 TCGA-QG-A5Z2-01 7 42005279 42005279 G A GLI3 Missense_Mutation p.A1131V 0.44 tolerated(0.49) benign(0.023) TCGA-QG-A5Z2-01 7 42187850 42187850 C T GLI3 Silent p.R114R 0.27 TCGA-QG-A5Z2-01 7 43590147 43590147 G A HECW1 Missense_Mutation p.G1451D 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-QG-A5Z2-01 7 44161459 44161462 AGGA - POLD2 Frame_Shift_Del p.F64Wfs*15 0.18 TCGA-QG-A5Z2-01 7 45113965 45113965 C A CCM2 Missense_Mutation p.L359M 0.28 deleterious(0) probably_damaging(0.991) TCGA-QG-A5Z2-01 7 45662255 45662255 T C ADCY1 Silent p.G311G 0.23 TCGA-QG-A5Z2-01 7 48547639 48547639 T C ABCA13 Silent p.Y4506Y 0.19 TCGA-QG-A5Z2-01 7 4965102 4965102 C T MMD2 Missense_Mutation p.A37T 0.34 deleterious(0) probably_damaging(0.982) TCGA-QG-A5Z2-01 7 5680854 5680854 G A RNF216 Silent p.C771C 0.23 TCGA-QG-A5Z2-01 7 64004710 64004710 T C ZNF680 Missense_Mutation p.E44G 0.24 deleterious(0) probably_damaging(0.913) TCGA-QG-A5Z2-01 7 6456187 6456187 A - DAGLB Intron 0.22 TCGA-QG-A5Z2-01 7 6541640 6541640 G A GRID2IP Missense_Mutation p.T1087I 0.15 deleterious(0.01) possibly_damaging(0.798) TCGA-QG-A5Z2-01 7 66296222 66296222 G A GTF2IRD1P1 RNA 0.19 TCGA-QG-A5Z2-01 7 70880891 70880891 C A WBSCR17 Silent p.P202P 0.26 TCGA-QG-A5Z2-01 7 75609875 75609875 T C POR Intron 0.22 TCGA-QG-A5Z2-01 7 76026991 76026991 C T SRCRB4D Missense_Mutation p.A238T 0.12 deleterious(0.04) possibly_damaging(0.896) TCGA-QG-A5Z2-01 7 76143284 76143284 G A UPK3B Missense_Mutation p.R216Q 0.29 deleterious_low_confidence(0) benign(0.001) TCGA-QG-A5Z2-01 7 82784627 82784627 G A PCLO Missense_Mutation p.P444S 0.12 possibly_damaging(0.607) TCGA-QG-A5Z2-01 7 87196282 87196282 A G ABCB1 Missense_Mutation p.Y117H 0.10 deleterious(0) possibly_damaging(0.891) TCGA-QG-A5Z2-01 7 91643633 91643633 T - AKAP9 Frame_Shift_Del p.L1203Yfs*16 0.21 TCGA-QG-A5Z2-01 7 92762580 92762580 T C SAMD9L Missense_Mutation p.E902G 0.07 deleterious(0) possibly_damaging(0.777) TCGA-QG-A5Z2-01 7 94294316 94294316 G A PEG10 3'UTR 0.29 TCGA-QG-A5Z2-01 7 94539589 94539589 G - PPP1R9A Frame_Shift_Del p.R57Gfs*44 0.23 TCGA-QG-A5Z2-01 7 95750411 95750411 G A SLC25A13 3'UTR 0.18 TCGA-QG-A5Z2-01 7 99489839 99489839 A - TRIM4 Frame_Shift_Del p.W484Gfs*2 0.19 TCGA-QG-A5Z2-01 7 99757734 99757734 G - GAL3ST4 Frame_Shift_Del p.F427Sfs*17 0.25 TCGA-QG-A5Z2-01 8 101717224 101717224 C T PABPC1 Missense_Mutation p.G583D 0.27 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 8 10583437 10583437 G A SOX7 Silent p.D378D 0.06 TCGA-QG-A5Z2-01 8 107719326 107719326 A - OXR1 Frame_Shift_Del p.E529Kfs*13 0.09 TCGA-QG-A5Z2-01 8 107773231 107773231 T C ABRA 3'UTR 0.06 TCGA-QG-A5Z2-01 8 113421225 113421225 A G CSMD3 Missense_Mutation p.L1811P 0.26 tolerated(0.08) benign(0.118) TCGA-QG-A5Z2-01 8 114449035 114449035 A T CSMD3 Missense_Mutation p.W17R 0.24 tolerated_low_confidence(0.65) benign(0) TCGA-QG-A5Z2-01 8 120569871 120569871 G A ENPP2 Missense_Mutation p.R880C 0.26 deleterious(0) probably_damaging(0.994) TCGA-QG-A5Z2-01 8 125597329 125597329 T - MTSS1 Frame_Shift_Del p.R155Efs*34 0.19 TCGA-QG-A5Z2-01 8 133883699 133883699 G A TG Silent p.A127A 0.25 TCGA-QG-A5Z2-01 8 143599550 143599550 G A BAI1 Missense_Mutation p.V957M 0.20 deleterious(0) possibly_damaging(0.867) TCGA-QG-A5Z2-01 8 143746993 143746993 G A JRK RNA 0.09 TCGA-QG-A5Z2-01 8 144695052 144695052 C T TSTA3 3'UTR 0.14 TCGA-QG-A5Z2-01 8 144734092 144734092 T C ZNF623 3'UTR 0.33 TCGA-QG-A5Z2-01 8 144899616 144899616 C T PUF60 Silent p.A343A 0.06 TCGA-QG-A5Z2-01 8 145113934 145113934 C T OPLAH Missense_Mutation p.E138K 0.29 deleterious(0) probably_damaging(0.991) TCGA-QG-A5Z2-01 8 145737450 145737450 G A RECQL4 Silent p.S1079S 0.10 TCGA-QG-A5Z2-01 8 145746713 145746713 T C LRRC14 Missense_Mutation p.S445P 0.14 tolerated(0.07) benign(0.007) TCGA-QG-A5Z2-01 8 146033757 146033757 C T ZNF517 Missense_Mutation p.R486W 0.10 deleterious(0) possibly_damaging(0.531) TCGA-QG-A5Z2-01 8 1624697 1624697 A C DLGAP2 Splice_Site p.X655_splice 0.30 TCGA-QG-A5Z2-01 8 17612665 17612665 C T MTUS1 Missense_Mutation p.A218T 0.26 deleterious(0.03) benign(0.076) TCGA-QG-A5Z2-01 8 21859694 21859694 C T XPO7 Missense_Mutation p.R952C 0.31 deleterious(0.02) probably_damaging(0.915) TCGA-QG-A5Z2-01 8 22168665 22168665 C T PIWIL2 Missense_Mutation p.A614V 0.19 tolerated(0.57) benign(0.096) TCGA-QG-A5Z2-01 8 25203035 25203035 G A DOCK5 Missense_Mutation p.G888S 0.16 tolerated(0.69) benign(0.072) TCGA-QG-A5Z2-01 8 28384690 28384690 C A FZD3 Missense_Mutation p.P138H 0.10 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 8 28991718 28991718 G T KIF13B Missense_Mutation p.L875M 0.25 tolerated(0.17) probably_damaging(0.97) TCGA-QG-A5Z2-01 8 3224629 3224629 C A CSMD1 Nonsense_Mutation p.G1014* 0.32 TCGA-QG-A5Z2-01 8 33364835 33364835 G A TTI2 Missense_Mutation p.A280V 0.08 deleterious(0.05) benign(0.327) TCGA-QG-A5Z2-01 8 37720397 37720397 T - RAB11FIP1 3'UTR 0.29 TCGA-QG-A5Z2-01 8 52721850 52721850 G T PXDNL Missense_Mutation p.L19M 0.32 tolerated(0.15) possibly_damaging(0.73) TCGA-QG-A5Z2-01 8 53554974 53554974 G A RB1CC1 Missense_Mutation p.A1425V 0.06 tolerated(0.41) benign(0.002) TCGA-QG-A5Z2-01 8 54963657 54963657 G A LYPLA1 Missense_Mutation p.T185M 0.08 deleterious(0.01) possibly_damaging(0.799) TCGA-QG-A5Z2-01 8 55055296 55055296 A - MRPL15 Frame_Shift_Del p.N170Mfs*106 0.18 TCGA-QG-A5Z2-01 8 55538813 55538813 A - RP1 Frame_Shift_Del p.R793Efs*55 0.17 TCGA-QG-A5Z2-01 8 56863054 56863054 A - LYN Frame_Shift_Del p.E110Kfs*15 0.13 TCGA-QG-A5Z2-01 8 56863118 56863118 T C LYN Splice_Site p.X128_splice 0.15 TCGA-QG-A5Z2-01 8 59060659 59060659 C T FAM110B 3'UTR 0.39 TCGA-QG-A5Z2-01 8 65509263 65509263 C T CYP7B1 Missense_Mutation p.R486H 0.23 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 8 68658524 68658524 A - CPA6 5'UTR 0.37 TCGA-QG-A5Z2-01 8 75272475 75272475 T C GDAP1 Silent p.H138H 0.15 TCGA-QG-A5Z2-01 8 81399789 81399791 CTC - ZBTB10 In_Frame_Del p.S249del 0.14 TCGA-QG-A5Z2-01 8 8750056 8750056 C T MFHAS1 Silent p.A171A 0.09 TCGA-QG-A5Z2-01 8 88885206 88885206 C T DCAF4L2 Missense_Mutation p.V332M 0.09 deleterious(0) probably_damaging(0.973) TCGA-QG-A5Z2-01 8 92020972 92020972 T - TMEM55A Frame_Shift_Del p.I180Sfs*21 0.42 TCGA-QG-A5Z2-01 8 95272421 95272421 C T GEM Missense_Mutation p.S104N 0.27 tolerated(0.52) benign(0.078) TCGA-QG-A5Z2-01 8 95531563 95531563 A - KIAA1429 Frame_Shift_Del p.F721Lfs*11 0.33 TCGA-QG-A5Z2-01 8 95800277 95800277 C T DPY19L4 Silent p.G668G 0.30 TCGA-QG-A5Z2-01 8 9609119 9609119 G A TNKS Missense_Mutation p.A945T 0.19 tolerated(0.14) probably_damaging(0.998) TCGA-QG-A5Z2-01 8 96166486 96166486 A - PLEKHF2 Frame_Shift_Del p.K73Nfs*24 0.08 TCGA-QG-A5Z2-01 9 100076693 100076693 G A CCDC180 Missense_Mutation p.V204M 0.26 tolerated(0.06) benign(0.055) TCGA-QG-A5Z2-01 9 101147921 101147921 C T GABBR2 Splice_Site p.X554_splice 0.26 TCGA-QG-A5Z2-01 9 101494900 101494900 C T ANKS6 3'UTR 0.39 TCGA-QG-A5Z2-01 9 103070815 103070815 A G TEX10 Missense_Mutation p.I811T 0.27 deleterious(0) benign(0.02) TCGA-QG-A5Z2-01 9 109689690 109689690 C - ZNF462 Frame_Shift_Del p.R1168Gfs*9 0.33 TCGA-QG-A5Z2-01 9 112211193 112211193 A G PTPN3 Intron 0.38 TCGA-QG-A5Z2-01 9 113238495 113238495 C T SVEP1 Missense_Mutation p.G863D 0.10 probably_damaging(1) TCGA-QG-A5Z2-01 9 116860442 116860442 G A KIF12 5'UTR 0.36 TCGA-QG-A5Z2-01 9 117139035 117139035 C T AKNA Missense_Mutation p.R351Q 0.25 tolerated(0.12) benign(0.147) TCGA-QG-A5Z2-01 9 117849132 117849132 C T TNC Missense_Mutation p.R293Q 0.27 deleterious(0.03) benign(0.055) TCGA-QG-A5Z2-01 9 128230294 128230294 G A MAPKAP1 Silent p.S434S 0.07 TCGA-QG-A5Z2-01 9 129596349 129596349 A - ZBTB43 3'UTR 0.26 TCGA-QG-A5Z2-01 9 130476273 130476275 GAG - PTRH1 3'UTR 0.37 TCGA-QG-A5Z2-01 9 130493006 130493006 G A TTC16 Silent p.S648S 0.08 TCGA-QG-A5Z2-01 9 13125277 13125277 T - MPDZ Frame_Shift_Del p.K1582Rfs*7 0.19 TCGA-QG-A5Z2-01 9 131784633 131784633 G A SH3GLB2 Missense_Mutation p.R45W 0.13 deleterious(0) probably_damaging(0.997) TCGA-QG-A5Z2-01 9 131940369 131940369 T C IER5L 5'UTR 0.23 TCGA-QG-A5Z2-01 9 133738315 133738315 C T ABL1 Missense_Mutation p.R258C 0.06 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 9 135698632 135698632 C T AK8 Silent p.L283L 0.07 TCGA-QG-A5Z2-01 9 136405809 136405809 G A ADAMTSL2 Missense_Mutation p.G168S 0.07 deleterious(0) probably_damaging(0.998) TCGA-QG-A5Z2-01 9 138379340 138379340 G A PPP1R26 Missense_Mutation p.G995E 0.19 deleterious(0.05) possibly_damaging(0.479) TCGA-QG-A5Z2-01 9 139413151 139413151 C T NOTCH1 Missense_Mutation p.D331N 0.09 tolerated(0.09) probably_damaging(1) TCGA-QG-A5Z2-01 9 139701541 139701541 C A CCDC183 Intron 0.14 TCGA-QG-A5Z2-01 9 139750043 139750043 C T MAMDC4 Silent p.C481C 0.13 TCGA-QG-A5Z2-01 9 139887414 139887414 C - C9orf142 Frame_Shift_Del p.R75Gfs*13 0.10 TCGA-QG-A5Z2-01 9 140080747 140080747 C T ANAPC2 Missense_Mutation p.V268M 0.36 tolerated(0.24) benign(0.004) TCGA-QG-A5Z2-01 9 140137526 140137526 G A TUBB4B Missense_Mutation p.V286M 0.26 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-QG-A5Z2-01 9 140175016 140175016 C - TOR4A 3'UTR 0.22 TCGA-QG-A5Z2-01 9 140245577 140245577 C T EXD3 Silent p.L469L 0.17 TCGA-QG-A5Z2-01 9 140469286 140469286 C T DPH7 Missense_Mutation p.V129M 0.06 tolerated(0.53) benign(0.003) TCGA-QG-A5Z2-01 9 140678649 140678649 C T EHMT1 Intron 0.17 TCGA-QG-A5Z2-01 9 15578876 15578876 G A CCDC171 Silent p.K69K 0.19 TCGA-QG-A5Z2-01 9 15666198 15666200 AGA - CCDC171 In_Frame_Del p.K319del 0.28 TCGA-QG-A5Z2-01 9 16583068 16583068 G A BNC2 Silent p.L116L 0.24 TCGA-QG-A5Z2-01 9 22446934 22446934 T C DMRTA1 5'UTR 0.39 TCGA-QG-A5Z2-01 9 27294316 27294316 T - EQTN Frame_Shift_Del p.N96Tfs*43 0.12 TCGA-QG-A5Z2-01 9 27556594 27556594 C T C9orf72 Silent p.T352T 0.09 TCGA-QG-A5Z2-01 9 33472212 33472212 G A NOL6 Missense_Mutation p.R85C 0.22 deleterious(0) probably_damaging(0.985) TCGA-QG-A5Z2-01 9 33675365 33675365 A - PTENP1 RNA 0.43 TCGA-QG-A5Z2-01 9 33941658 33941658 C A UBAP2 Nonsense_Mutation p.G640* 0.21 TCGA-QG-A5Z2-01 9 34660796 34660796 C T IL11RA Intron 0.29 TCGA-QG-A5Z2-01 9 35075014 35075014 C T FANCG Missense_Mutation p.A516T 0.14 deleterious(0) benign(0.397) TCGA-QG-A5Z2-01 9 35106592 35106592 G - FAM214B Frame_Shift_Del p.S335Vfs*77 0.26 TCGA-QG-A5Z2-01 9 35403808 35403808 C T UNC13B Silent p.C1518C 0.21 TCGA-QG-A5Z2-01 9 35547743 35547743 T C RUSC2 Missense_Mutation p.S409P 0.15 deleterious(0.02) probably_damaging(0.993) TCGA-QG-A5Z2-01 9 37441646 37441646 C T ZBTB5 Silent p.Q301Q 0.21 TCGA-QG-A5Z2-01 9 37974824 37974824 C T SHB Silent p.R283R 0.15 TCGA-QG-A5Z2-01 9 4827002 4827002 G T RCL1 Missense_Mutation p.R118L 0.28 deleterious(0.03) benign(0.14) TCGA-QG-A5Z2-01 9 5922700 5922700 A T KIAA2026 Missense_Mutation p.I1099N 0.11 deleterious(0) possibly_damaging(0.667) TCGA-QG-A5Z2-01 9 5969035 5969035 A G KIAA2026 Missense_Mutation p.L399S 0.27 deleterious(0) probably_damaging(0.996) TCGA-QG-A5Z2-01 9 6012387 6012387 C T RANBP6 Missense_Mutation p.R1074H 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-QG-A5Z2-01 9 71397333 71397333 T A FAM122A 3'UTR 0.16 TCGA-QG-A5Z2-01 9 72961511 72961511 A G SMC5 Intron 0.19 TCGA-QG-A5Z2-01 9 77390877 77390877 T G TRPM6 Missense_Mutation p.S1109R 0.21 deleterious(0) possibly_damaging(0.774) TCGA-QG-A5Z2-01 9 79117224 79117224 C T GCNT1 5'UTR 0.24 TCGA-QG-A5Z2-01 9 84530403 84530403 T C SPATA31D5P RNA 0.06 TCGA-QG-A5Z2-01 9 88836497 88836497 G A C9orf153 3'UTR 0.33 TCGA-QG-A5Z2-01 9 88940249 88940249 C A ZCCHC6 Missense_Mutation p.D597Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-QG-A5Z2-01 9 91605931 91605931 G A C9orf47 Silent p.T7T 0.06 TCGA-QG-A5Z2-01 9 91972447 91972447 T C SECISBP2 Silent p.S745S 0.06 TCGA-QG-A5Z2-01 9 95847034 95847034 G A SUSD3 3'UTR 0.13 TCGA-QG-A5Z2-01 9 97325708 97325708 G A FBP2 Silent p.G247G 0.28 TCGA-QG-A5Z2-01 9 98211549 98211549 G - PTCH1 Frame_Shift_Del p.S1203Afs*52 0.33 TCGA-QG-A5Z2-01 9 990361 990361 T C DMRT3 Missense_Mutation p.F259L 0.13 deleterious(0) probably_damaging(0.95) TCGA-QG-A5Z2-01 X 100381708 100381708 C A CENPI Missense_Mutation p.P233H 0.13 deleterious(0.03) probably_damaging(0.938) TCGA-QG-A5Z2-01 X 102317901 102317901 A G BEX1 Missense_Mutation p.L101S 0.21 tolerated(0.07) benign(0.103) TCGA-QG-A5Z2-01 X 106172818 106172819 - A CLDN2 3'UTR 0.32 TCGA-QG-A5Z2-01 X 106186179 106186179 C A MORC4 Missense_Mutation p.G648W 0.13 deleterious(0) probably_damaging(0.911) TCGA-QG-A5Z2-01 X 107224931 107224931 G A TEX13B Missense_Mutation p.R143W 0.29 deleterious(0.03) possibly_damaging(0.55) TCGA-QG-A5Z2-01 X 115305554 115305554 A - AGTR2 3'UTR 0.48 TCGA-QG-A5Z2-01 X 120183242 120183242 A T GLUD2 3'UTR 0.34 TCGA-QG-A5Z2-01 X 123805534 123805534 T - TENM1 Frame_Shift_Del p.V390Cfs*8 0.08 TCGA-QG-A5Z2-01 X 128718344 128718344 G T OCRL Missense_Mutation p.K713N 0.60 deleterious(0.03) possibly_damaging(0.717) TCGA-QG-A5Z2-01 X 129318543 129318543 G A RAB33A Silent p.S181S 0.19 TCGA-QG-A5Z2-01 X 140270966 140270966 G A LDOC1 Nonsense_Mutation p.R81* 0.58 TCGA-QG-A5Z2-01 X 142803977 142803977 A G SPANXN2 5'UTR 0.88 TCGA-QG-A5Z2-01 X 151092927 151092927 G A MAGEA4 Missense_Mutation p.G264D 0.15 tolerated(0.23) benign(0.072) TCGA-QG-A5Z2-01 X 151808900 151808900 G A GABRQ Missense_Mutation p.D71N 0.17 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 X 153036228 153036228 C T PLXNB3 Missense_Mutation p.R699C 0.54 deleterious(0.03) possibly_damaging(0.828) TCGA-QG-A5Z2-01 X 153670472 153670472 A G GDI1 Missense_Mutation p.M336V 0.19 tolerated(0.89) benign(0.004) TCGA-QG-A5Z2-01 X 15833885 15833885 A G ZRSR2 Missense_Mutation p.R215G 0.41 tolerated(0.12) benign(0.04) TCGA-QG-A5Z2-01 X 200872 200872 C T PLCXD1 Silent p.S6S 0.11 TCGA-QG-A5Z2-01 X 224151 224151 G A GTPBP6 Missense_Mutation p.P206S 0.54 tolerated(0.32) benign(0.016) TCGA-QG-A5Z2-01 X 23801481 23801481 G A SAT1 Missense_Mutation p.V5M 0.08 tolerated(0.22) benign(0.074) TCGA-QG-A5Z2-01 X 24229404 24229404 C T ZFX Missense_Mutation p.R777W 0.36 deleterious(0) probably_damaging(0.956) TCGA-QG-A5Z2-01 X 31089840 31089840 G A FTHL17 Silent p.R77R 0.11 TCGA-QG-A5Z2-01 X 32383222 32383222 G A DMD Missense_Mutation p.T1647M 0.54 possibly_damaging(0.897) TCGA-QG-A5Z2-01 X 41029353 41029353 A G USP9X Silent p.S914S 0.58 TCGA-QG-A5Z2-01 X 41586604 41586604 A T GPR82 Missense_Mutation p.I109F 0.69 deleterious(0.01) possibly_damaging(0.489) TCGA-QG-A5Z2-01 X 44171826 44171826 G T EFHC2 Silent p.A73A 0.12 TCGA-QG-A5Z2-01 X 48319074 48319074 C T SLC38A5 Silent p.L343L 0.08 TCGA-QG-A5Z2-01 X 48819729 48819730 - G KCND1 3'UTR 0.50 TCGA-QG-A5Z2-01 X 48832431 48832431 G A GRIPAP1 Silent p.I759I 0.37 TCGA-QG-A5Z2-01 X 49370807 49370807 G A GAGE1 3'UTR 0.38 TCGA-QG-A5Z2-01 X 53225983 53225983 C T KDM5C Missense_Mutation p.A956T 0.61 tolerated(0.48) benign(0.021) TCGA-QG-A5Z2-01 X 53578382 53578382 G A HUWE1 Missense_Mutation p.R2981C 0.12 possibly_damaging(0.898) TCGA-QG-A5Z2-01 X 54570661 54570661 G A GNL3L Missense_Mutation p.V178I 0.13 tolerated(0.11) benign(0.123) TCGA-QG-A5Z2-01 X 591812 591812 G A SHOX Silent p.T60T 0.28 TCGA-QG-A5Z2-01 X 69283596 69283596 C T OTUD6A 3'UTR 0.67 TCGA-QG-A5Z2-01 X 71354083 71354083 C - NHSL2 Intron 0.38 TCGA-QG-A5Z2-01 X 71708862 71708862 C A HDAC8 Missense_Mutation p.G220W 0.13 deleterious(0) probably_damaging(1) TCGA-QG-A5Z2-01 X 73641371 73641371 G A SLC16A2 5'UTR 0.25 TCGA-QG-A5Z2-01 X 78011930 78011930 G A LPAR4 3'UTR 0.63 TCGA-QG-A5Z2-01 X 7889831 7889831 G T PNPLA4 Missense_Mutation p.H112N 0.65 tolerated(0.21) possibly_damaging(0.846) TCGA-QG-A5Z2-01 X 90693212 90693212 T A PABPC5 3'UTR 0.53 TCGA-QG-A5Z2-01 X 92964408 92964408 C G FAM133A 5'UTR 0.54 TCGA-QG-A5Z2-01 X 96212985 96212985 A C DIAPH2 Silent p.P591P 0.29 TCGA-QG-A5Z2-01 X 9660228 9660228 G A TBL1X Silent p.R275R 0.43 TCGA-QL-A97D-01 10 102120564 102120564 C G SCD Missense_Mutation p.N318K 0.45 deleterious(0) possibly_damaging(0.611) TCGA-QL-A97D-01 10 104122409 104122409 G A GBF1 Missense_Mutation p.E621K 0.19 tolerated(0.54) benign(0.08) TCGA-QL-A97D-01 10 12077120 12077120 C G UPF2 Missense_Mutation p.E101D 0.07 tolerated(0.24) unknown(0) TCGA-QL-A97D-01 10 122665461 122665461 A C WDR11 Missense_Mutation p.N1122T 0.38 deleterious(0.01) benign(0.424) TCGA-QL-A97D-01 10 124609945 124609945 C A FAM24B Silent p.A29A 0.35 TCGA-QL-A97D-01 10 14050136 14050136 C G FRMD4A Intron 0.29 TCGA-QL-A97D-01 10 26377258 26377258 A C MYO3A Missense_Mutation p.T496P 0.18 deleterious(0.01) benign(0.072) TCGA-QL-A97D-01 10 3161034 3161034 C T PFKP Silent p.N501N 0.33 TCGA-QL-A97D-01 10 31810397 31810397 T A ZEB1 Missense_Mutation p.S713T 0.34 tolerated(0.09) probably_damaging(0.983) TCGA-QL-A97D-01 10 38242048 38242048 G C ZNF25 Missense_Mutation p.F126L 0.09 tolerated(0.06) benign(0.015) TCGA-QL-A97D-01 10 38343359 38343359 T G ZNF33A Missense_Mutation p.L103V 0.20 tolerated(0.13) benign(0.009) TCGA-QL-A97D-01 10 45799668 45799668 G A OR13A1 Missense_Mutation p.T68M 0.35 tolerated(0.23) benign(0.048) TCGA-QL-A97D-01 10 50363924 50363924 G T C10orf128 3'UTR 0.15 TCGA-QL-A97D-01 10 69966634 69966634 C T MYPN Missense_Mutation p.S1256L 0.09 deleterious(0) probably_damaging(0.999) TCGA-QL-A97D-01 10 78771776 78771776 G T KCNMA1 Missense_Mutation p.H681N 0.20 deleterious(0) possibly_damaging(0.812) TCGA-QL-A97D-01 10 81275665 81275665 A C EIF5AL1 3'UTR 0.31 TCGA-QL-A97D-01 10 82033555 82033555 G - MAT1A Frame_Shift_Del p.R391Gfs*50 0.25 TCGA-QL-A97D-01 10 97023621 97023621 G A PDLIM1 Missense_Mutation p.P178L 0.20 deleterious(0.03) benign(0) TCGA-QL-A97D-01 11 102710922 102710922 A T MMP3 Silent p.P284P 0.07 TCGA-QL-A97D-01 11 113085225 113085225 G A NCAM1 Missense_Mutation p.E410K 0.31 tolerated(0.11) benign(0.371) TCGA-QL-A97D-01 11 113660924 113660924 C - ATF4P4 RNA 0.14 TCGA-QL-A97D-01 11 121177766 121177766 C T SC5D Missense_Mutation p.R149C 0.17 tolerated(0.12) possibly_damaging(0.67) TCGA-QL-A97D-01 11 122817346 122817346 C T C11orf63 Missense_Mutation p.T592M 0.18 tolerated(0.12) benign(0.239) TCGA-QL-A97D-01 11 12315279 12315279 G T MICALCL Missense_Mutation p.D101Y 0.09 deleterious(0.01) possibly_damaging(0.847) TCGA-QL-A97D-01 11 1275504 1275504 C T MUC5B Missense_Mutation p.R5134C 0.37 unknown(0) TCGA-QL-A97D-01 11 130775936 130775936 T C SNX19 Silent p.K785K 0.08 TCGA-QL-A97D-01 11 17741651 17741651 G A MYOD1 Missense_Mutation p.A108T 0.29 tolerated(0.26) benign(0.145) TCGA-QL-A97D-01 11 17981063 17981063 G A SERGEF Missense_Mutation p.P322L 0.32 tolerated(0.33) benign(0.001) TCGA-QL-A97D-01 11 2168647 2168647 C T INS-IGF2 Intron 0.44 TCGA-QL-A97D-01 11 294170 294170 G A ATHL1 Silent p.A594A 0.31 TCGA-QL-A97D-01 11 30033972 30033972 C T KCNA4 Missense_Mutation p.R85K 0.15 tolerated_low_confidence(0.21) benign(0.067) TCGA-QL-A97D-01 11 36250989 36250989 A T LDLRAD3 3'UTR 0.32 TCGA-QL-A97D-01 11 55063041 55063041 T G TRIM51HP RNA 0.13 TCGA-QL-A97D-01 11 55136032 55136032 C T OR4A15 Missense_Mutation p.L225F 0.11 tolerated_low_confidence(0.06) benign(0.375) TCGA-QL-A97D-01 11 55595274 55595274 G C OR5L2 Missense_Mutation p.V194L 0.06 tolerated(0.5) benign(0.003) TCGA-QL-A97D-01 11 55904420 55904420 A G OR8J3 Missense_Mutation p.Y259H 0.45 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 11 56185412 56185412 G A OR5R1 Silent p.T99T 0.16 TCGA-QL-A97D-01 11 63486425 63486425 G A RTN3 Missense_Mutation p.V151I 0.10 tolerated(0.08) benign(0.009) TCGA-QL-A97D-01 11 64575365 64575365 G A MEN1 Missense_Mutation p.R223W 0.38 deleterious(0) benign(0.004) TCGA-QL-A97D-01 11 64802535 64802535 G A SNX15 Missense_Mutation p.G126E 0.19 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 11 65734003 65734003 C T SART1 Silent p.S388S 0.32 TCGA-QL-A97D-01 11 69625374 69625374 G A FGF3 Missense_Mutation p.T140M 0.10 deleterious(0.01) possibly_damaging(0.86) TCGA-QL-A97D-01 11 71249171 71249171 T A KRTAP5-8 Missense_Mutation p.C24S 0.28 deleterious_low_confidence(0) unknown(0) TCGA-QL-A97D-01 11 7982107 7982107 C A NLRP10 Missense_Mutation p.C351F 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-QL-A97D-01 12 104069739 104069739 A G STAB2 Silent p.G862G 0.24 TCGA-QL-A97D-01 12 107126740 107126740 G A RFX4 Missense_Mutation p.A513T 0.22 tolerated(0.3) benign(0.022) TCGA-QL-A97D-01 12 115117314 115117314 T C TBX3 Missense_Mutation p.D287G 0.31 deleterious(0) probably_damaging(0.912) TCGA-QL-A97D-01 12 119594560 119594560 G A SRRM4 Missense_Mutation p.R598Q 0.29 deleterious_low_confidence(0) unknown(0) TCGA-QL-A97D-01 12 129558931 129558931 G A TMEM132D Missense_Mutation p.A930V 0.54 deleterious(0) probably_damaging(0.999) TCGA-QL-A97D-01 12 130184702 130184702 C T TMEM132D Silent p.T207T 0.57 TCGA-QL-A97D-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.27 deleterious(0) benign(0.361) TCGA-QL-A97D-01 12 30882149 30882149 A G CAPRIN2 Silent p.D405D 0.32 TCGA-QL-A97D-01 12 43833862 43833862 G A ADAMTS20 Silent p.D767D 0.32 TCGA-QL-A97D-01 12 51089049 51089049 G T DIP2B Splice_Site p.X574_splice 0.29 TCGA-QL-A97D-01 12 52940157 52940157 C T KRT71 Missense_Mutation p.R413H 0.07 deleterious(0.02) probably_damaging(0.967) TCGA-QL-A97D-01 12 53421916 53421916 G A EIF4B Missense_Mutation p.R308Q 0.41 tolerated(0.09) benign(0.238) TCGA-QL-A97D-01 12 57487321 57487321 G A NAB2 Missense_Mutation p.V470I 0.39 deleterious(0.02) benign(0.433) TCGA-QL-A97D-01 12 68052184 68052184 G A DYRK2 Silent p.A499A 0.29 TCGA-QL-A97D-01 12 75601233 75601233 G A KCNC2 Silent p.G177G 0.17 TCGA-QL-A97D-01 12 80730784 80730784 G T OTOGL Missense_Mutation p.K1611N 0.14 deleterious(0) possibly_damaging(0.485) TCGA-QL-A97D-01 12 8289415 8289415 C A CLEC4A Missense_Mutation p.S161Y 0.46 tolerated(0.83) benign(0.081) TCGA-QL-A97D-01 12 8976417 8976417 G T A2ML1 Missense_Mutation p.Q116H 0.08 tolerated(0.14) benign(0.015) TCGA-QL-A97D-01 13 108518067 108518067 T A FAM155A Missense_Mutation p.E293V 0.20 deleterious(0.01) benign(0.09) TCGA-QL-A97D-01 13 113907432 113907432 C G CUL4A Missense_Mutation p.L559V 0.06 deleterious(0.02) benign(0.015) TCGA-QL-A97D-01 13 20216323 20216323 T A MPHOSPH8 Silent p.I94I 0.19 TCGA-QL-A97D-01 13 22178119 22178119 T G MICU2 Missense_Mutation p.S57R 0.06 tolerated(0.44) benign(0) TCGA-QL-A97D-01 13 23913292 23913292 G A SACS Missense_Mutation p.R1575W 0.69 probably_damaging(0.997) TCGA-QL-A97D-01 13 25745406 25745406 C T AMER2 Missense_Mutation p.G118S 0.08 tolerated(0.48) benign(0.05) TCGA-QL-A97D-01 13 32945130 32945130 G A BRCA2 Missense_Mutation p.R2842H 0.25 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 13 36049542 36049542 C T MAB21L1 Missense_Mutation p.G245D 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-QL-A97D-01 13 36909527 36909527 A C SPG20 Silent p.T147T 0.08 TCGA-QL-A97D-01 13 61083915 61083915 A G TDRD3 Missense_Mutation p.K293E 0.10 deleterious(0.01) benign(0.366) TCGA-QL-A97D-01 13 67801687 67801687 C T PCDH9 Missense_Mutation p.A296T 0.08 tolerated(0.57) benign(0.002) TCGA-QL-A97D-01 13 84453498 84453498 G A SLITRK1 3'UTR 0.16 TCGA-QL-A97D-01 13 99567662 99567662 C T DOCK9 Nonsense_Mutation p.W271* 0.16 TCGA-QL-A97D-01 14 104139512 104139512 G A KLC1 Silent p.T383T 0.22 TCGA-QL-A97D-01 14 105268373 105268373 G A ZBTB42 Missense_Mutation p.R280Q 0.85 tolerated(0.59) benign(0.003) TCGA-QL-A97D-01 14 20019933 20019933 G T POTEM Missense_Mutation p.S96R 0.10 deleterious_low_confidence(0.02) benign(0.043) TCGA-QL-A97D-01 14 20295831 20295831 T A OR4N2 Missense_Mutation p.F75Y 0.15 deleterious(0) possibly_damaging(0.581) TCGA-QL-A97D-01 14 21961083 21961083 G A TOX4 Missense_Mutation p.M436I 0.73 tolerated_low_confidence(0.4) benign(0.38) TCGA-QL-A97D-01 14 30095710 30095710 T A PRKD1 Missense_Mutation p.Q593L 0.24 deleterious(0) probably_damaging(0.968) TCGA-QL-A97D-01 14 38679782 38679782 G A SSTR1 3'UTR 0.10 TCGA-QL-A97D-01 14 81964374 81964374 C T SEL1L Silent p.S330S 0.59 TCGA-QL-A97D-01 14 88454857 88454857 C T GALC Missense_Mutation p.R69Q 0.04 deleterious(0) probably_damaging(0.989) TCGA-QL-A97D-01 14 88792985 88792985 G T KCNK10 5'Flank 0.56 TCGA-QL-A97D-01 14 95905983 95905983 G A SYNE3 Missense_Mutation p.R738W 0.71 deleterious(0) possibly_damaging(0.901) TCGA-QL-A97D-01 14 96792204 96792204 C A ATG2B Missense_Mutation p.R740L 0.68 tolerated(0.05) possibly_damaging(0.502) TCGA-QL-A97D-01 15 22332559 22332559 G A RP11-69H14.6 RNA 0.06 TCGA-QL-A97D-01 15 23811023 23811023 C T MKRN3 Missense_Mutation p.L32F 0.26 tolerated(0.08) benign(0.216) TCGA-QL-A97D-01 16 18887715 18887715 C A SMG1 Missense_Mutation p.V541F 0.33 deleterious(0) probably_damaging(0.991) TCGA-QL-A97D-01 16 19070964 19070964 C T TMC7 Intron 0.48 TCGA-QL-A97D-01 16 21145642 21145642 G A DNAH3 Silent p.N340N 0.34 TCGA-QL-A97D-01 16 24196869 24196869 C A PRKCB Missense_Mutation p.A568D 0.41 deleterious(0) probably_damaging(0.984) TCGA-QL-A97D-01 16 31106786 31106786 G T VKORC1 5'Flank 0.43 TCGA-QL-A97D-01 16 4458251 4458251 G T CORO7 Missense_Mutation p.D78E 0.49 tolerated(0.13) benign(0.105) TCGA-QL-A97D-01 16 50707416 50707416 G A SNX20 Silent p.F284F 0.15 TCGA-QL-A97D-01 16 51174131 51174131 C T SALL1 Missense_Mutation p.E668K 0.32 deleterious(0) possibly_damaging(0.591) TCGA-QL-A97D-01 16 57115448 57115448 G T NLRC5 Missense_Mutation p.K1805N 0.19 tolerated(0.07) benign(0.15) TCGA-QL-A97D-01 16 61687506 61687506 C T CDH8 3'UTR 0.09 TCGA-QL-A97D-01 16 68732257 68732257 G A CDH3 Missense_Mutation p.R815H 0.10 deleterious(0.01) probably_damaging(0.909) TCGA-QL-A97D-01 16 74451980 74451980 C A CLEC18B Missense_Mutation p.A145S 0.12 tolerated(0.21) benign(0.064) TCGA-QL-A97D-01 16 82033375 82033375 C T SDR42E1 Missense_Mutation p.D175N 0.28 tolerated(0.14) benign(0.001) TCGA-QL-A97D-01 17 13446895 13446895 T A HS3ST3A1 Intron 0.42 TCGA-QL-A97D-01 17 17184497 17184497 C T COPS3 Missense_Mutation p.A2T 0.15 deleterious(0.03) benign(0.223) TCGA-QL-A97D-01 17 37880162 37880162 C T ERBB2 Intron 0.46 TCGA-QL-A97D-01 17 39975478 39975478 A G FKBP10 Silent p.P248P 0.60 TCGA-QL-A97D-01 17 56582307 56582307 A G MTMR4 Missense_Mutation p.W378R 0.26 deleterious(0) probably_damaging(0.953) TCGA-QL-A97D-01 17 72923873 72923873 A G OTOP2 Missense_Mutation p.H208R 0.33 tolerated(0.43) benign(0.295) TCGA-QL-A97D-01 17 74005434 74005434 G A EVPL Silent p.H1284H 0.48 TCGA-QL-A97D-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.53 deleterious(0) probably_damaging(0.997) TCGA-QL-A97D-01 18 43462286 43462286 T A EPG5 Missense_Mutation p.Y1824F 0.25 deleterious(0.02) probably_damaging(0.953) TCGA-QL-A97D-01 19 10158008 10158008 G A C3P1 RNA 0.36 TCGA-QL-A97D-01 19 12740190 12740190 G A ZNF791 3'UTR 0.11 TCGA-QL-A97D-01 19 13988145 13988145 C T NANOS3 Missense_Mutation p.T28I 0.30 tolerated(0.21) benign(0.016) TCGA-QL-A97D-01 19 1468987 1468987 C A APC2 Missense_Mutation p.A1896D 0.36 benign(0.295) TCGA-QL-A97D-01 19 3282180 3282180 C G CELF5 Silent p.G269G 0.42 TCGA-QL-A97D-01 19 3542946 3542946 C A MFSD12 Nonsense_Mutation p.E484* 0.08 TCGA-QL-A97D-01 19 36486448 36486448 A G SDHAF1 Missense_Mutation p.Q91R 0.08 tolerated_low_confidence(0.67) benign(0.001) TCGA-QL-A97D-01 19 36545074 36545086 GGCCCGCAGTGTT - THAP8 Frame_Shift_Del p.N12Afs*9 0.12 TCGA-QL-A97D-01 19 4037453 4037453 C T PIAS4 Silent p.R408R 0.05 TCGA-QL-A97D-01 19 48049169 48049169 C A ZNF541 Missense_Mutation p.S206I 0.11 deleterious(0) probably_damaging(0.958) TCGA-QL-A97D-01 19 48183876 48183876 G A GLTSCR1 Silent p.P483P 0.33 TCGA-QL-A97D-01 19 49936198 49936198 C T SLC17A7 Missense_Mutation p.R296Q 0.35 deleterious(0.01) possibly_damaging(0.791) TCGA-QL-A97D-01 19 50435751 50435751 C T ATF5 Missense_Mutation p.P84L 0.17 deleterious(0) possibly_damaging(0.567) TCGA-QL-A97D-01 19 50464428 50464428 C T SIGLEC11 5'UTR 0.22 TCGA-QL-A97D-01 19 51170010 51170010 G A SHANK1 Missense_Mutation p.A1736V 0.46 unknown(0) TCGA-QL-A97D-01 19 51875557 51875557 G A NKG7 Silent p.Y54Y 0.35 TCGA-QL-A97D-01 19 55247439 55247439 A G KIR3DL3 Missense_Mutation p.D370G 0.17 deleterious(0.04) possibly_damaging(0.899) TCGA-QL-A97D-01 19 55872584 55872584 A G FAM71E2 Silent p.F204F 0.20 TCGA-QL-A97D-01 19 57641608 57641608 T C USP29 Missense_Mutation p.L522P 0.06 deleterious(0) probably_damaging(0.999) TCGA-QL-A97D-01 19 57742662 57742662 G T AURKC Missense_Mutation p.A16S 0.45 tolerated(0.72) benign(0.006) TCGA-QL-A97D-01 19 6822340 6822340 G A VAV1 Silent p.P186P 0.35 TCGA-QL-A97D-01 19 7593528 7593528 C T MCOLN1 Missense_Mutation p.T308I 0.18 tolerated(0.87) benign(0.009) TCGA-QL-A97D-01 19 7734300 7734300 G T RETN Nonsense_Mutation p.E30* 0.25 TCGA-QL-A97D-01 19 9070876 9070876 T C MUC16 Missense_Mutation p.I5524V 0.08 unknown(0) TCGA-QL-A97D-01 1 10434465 10434465 C T KIF1B Nonsense_Mutation p.R1634* 0.32 TCGA-QL-A97D-01 1 111854860 111854860 G A CHIA Missense_Mutation p.R35Q 0.06 deleterious(0.03) possibly_damaging(0.572) TCGA-QL-A97D-01 1 12123595 12123595 C T TNFRSF8 5'UTR 0.24 TCGA-QL-A97D-01 1 152286111 152286111 A G FLG Silent p.S417S 0.08 TCGA-QL-A97D-01 1 152671876 152671876 C A LCE2A 3'UTR 0.43 TCGA-QL-A97D-01 1 154144901 154144901 T A TPM3 Intron 0.07 TCGA-QL-A97D-01 1 155979240 155979240 T C SSR2 3'UTR 0.33 TCGA-QL-A97D-01 1 157497504 157497504 G T FCRL5 Missense_Mutation p.N621K 0.34 tolerated(0.49) benign(0.085) TCGA-QL-A97D-01 1 157789814 157789814 A T FCRL1 Missense_Mutation p.L5Q 0.28 tolerated_low_confidence(0.05) benign(0.017) TCGA-QL-A97D-01 1 159505104 159505104 C A OR10J5 Missense_Mutation p.G232C 0.07 deleterious(0.01) possibly_damaging(0.739) TCGA-QL-A97D-01 1 160104985 160104985 C T ATP1A2 Missense_Mutation p.S672L 0.36 tolerated(0.06) benign(0.006) TCGA-QL-A97D-01 1 18149714 18149714 C T ACTL8 Missense_Mutation p.R71C 0.07 tolerated(0.08) probably_damaging(0.964) TCGA-QL-A97D-01 1 182615965 182615965 C T RGS8 Missense_Mutation p.V168I 0.16 tolerated(1) benign(0.002) TCGA-QL-A97D-01 1 207241029 207241029 G A PFKFB2 Missense_Mutation p.G273D 0.18 possibly_damaging(0.831) TCGA-QL-A97D-01 1 208234175 208234175 G A PLXNA2 Missense_Mutation p.T865M 0.09 deleterious(0) possibly_damaging(0.765) TCGA-QL-A97D-01 1 216371701 216371701 C G USH2A Missense_Mutation p.G1346A 0.20 probably_damaging(0.999) TCGA-QL-A97D-01 1 220440693 220440693 T C RAB3GAP2 Intron 0.35 TCGA-QL-A97D-01 1 220863969 220863969 C A C1orf115 Silent p.P75P 0.34 TCGA-QL-A97D-01 1 228109662 228109662 C T WNT9A Missense_Mutation p.G219S 0.08 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 1 23236913 23236913 G A EPHB2 Silent p.P848P 0.20 TCGA-QL-A97D-01 1 236898963 236898963 A G ACTN2 Silent p.E242E 0.10 TCGA-QL-A97D-01 1 247492913 247492913 C T ZNF496 5'UTR 0.45 TCGA-QL-A97D-01 1 2494683 2494683 T A TNFRSF14 Missense_Mutation p.S275T 0.31 tolerated(0.76) benign(0) TCGA-QL-A97D-01 1 26288386 26288386 C T PAFAH2 3'UTR 0.26 TCGA-QL-A97D-01 1 3410620 3410620 C T MEGF6 Missense_Mutation p.D1400N 0.08 tolerated(0.11) benign(0.012) TCGA-QL-A97D-01 1 46049726 46049726 T C NASP 5'Flank 0.22 TCGA-QL-A97D-01 1 65876998 65876998 A G DNAJC6 Silent p.V900V 0.25 TCGA-QL-A97D-01 1 74621466 74621466 A G LRRIQ3 Silent p.L220L 0.12 TCGA-QL-A97D-01 1 75172647 75172647 T C CRYZ Missense_Mutation p.N255S 0.33 deleterious(0.04) benign(0.062) TCGA-QL-A97D-01 1 77333216 77333216 C T ST6GALNAC5 5'UTR 0.25 TCGA-QL-A97D-01 1 79383332 79383332 C A ELTD1 Missense_Mutation p.C579F 0.30 deleterious(0) probably_damaging(0.996) TCGA-QL-A97D-01 20 25657742 25657742 C T ZNF337 Intron 0.48 TCGA-QL-A97D-01 20 30432396 30432396 G T FOXS1 Missense_Mutation p.T317N 0.16 deleterious(0.01) benign(0.446) TCGA-QL-A97D-01 20 34327371 34327371 G A RBM39 Intron 0.31 TCGA-QL-A97D-01 20 42744945 42744945 G C JPH2 Missense_Mutation p.A457G 0.11 tolerated(0.28) benign(0.019) TCGA-QL-A97D-01 20 49226215 49226215 G A FAM65C Silent p.R153R 0.13 TCGA-QL-A97D-01 21 15561421 15561421 A G LIPI Silent p.Y143Y 0.08 TCGA-QL-A97D-01 21 27141410 27141410 C T GABPA Missense_Mutation p.A411V 0.13 deleterious(0.04) benign(0.047) TCGA-QL-A97D-01 21 45507602 45507602 C G TRAPPC10 Silent p.L854L 0.42 TCGA-QL-A97D-01 21 46900649 46900649 C T COL18A1 Silent p.P676P 0.36 TCGA-QL-A97D-01 22 38369593 38369593 G A SOX10 Missense_Mutation p.T437M 0.39 deleterious(0) probably_damaging(0.925) TCGA-QL-A97D-01 22 44464962 44464962 G A PARVB Intron 0.64 TCGA-QL-A97D-01 22 46931365 46931365 C A CELSR1 Missense_Mutation p.S568I 0.14 deleterious(0) possibly_damaging(0.641) TCGA-QL-A97D-01 2 103001409 103001409 G T IL18R1 Nonsense_Mutation p.E254* 0.09 TCGA-QL-A97D-01 2 141747208 141747208 T A LRP1B Missense_Mutation p.D888V 0.50 probably_damaging(0.992) TCGA-QL-A97D-01 2 167151133 167151133 A C SCN9A Missense_Mutation p.L314R 0.23 deleterious(0) probably_damaging(0.992) TCGA-QL-A97D-01 2 1677555 1677555 C T PXDN Missense_Mutation p.R293H 0.07 deleterious(0) probably_damaging(0.982) TCGA-QL-A97D-01 2 167760317 167760317 C T XIRP2 Missense_Mutation p.R109C 0.22 probably_damaging(0.959) TCGA-QL-A97D-01 2 168115128 168115128 C A XIRP2 3'UTR 0.45 TCGA-QL-A97D-01 2 168726820 168726820 G C B3GALT1 3'UTR 0.40 TCGA-QL-A97D-01 2 179403856 179403856 G A TTN Missense_Mutation p.R32936C 0.21 TCGA-QL-A97D-01 2 179444882 179444882 G T TTN Missense_Mutation p.P22378T 0.69 TCGA-QL-A97D-01 2 179464372 179464372 C T TTN Silent p.P18752P 0.74 TCGA-QL-A97D-01 2 189434058 189434058 A G GULP1 Silent p.K164K 0.18 TCGA-QL-A97D-01 2 189873899 189873899 G A COL3A1 Missense_Mutation p.A1259T 0.63 unknown(0) TCGA-QL-A97D-01 2 201719735 201719735 C T CLK1 Missense_Mutation p.V420I 0.20 tolerated(0.09) benign(0.015) TCGA-QL-A97D-01 2 207620123 207620123 C A MDH1B Nonsense_Mutation p.E174* 0.15 TCGA-QL-A97D-01 2 210559425 210559425 G A MAP2 Missense_Mutation p.R844H 0.75 deleterious(0.02) benign(0.005) TCGA-QL-A97D-01 2 211167499 211167499 C T MYL1 Intron 0.11 TCGA-QL-A97D-01 2 223065936 223065936 G A PAX3 Missense_Mutation p.T492M 0.70 deleterious_low_confidence(0.01) benign(0.013) TCGA-QL-A97D-01 2 230632198 230632198 G T TRIP12 3'UTR 0.66 TCGA-QL-A97D-01 2 231379819 231379821 AAG - SP100 Intron 0.09 TCGA-QL-A97D-01 2 240036784 240036784 G A HDAC4 Missense_Mutation p.R581C 0.69 deleterious(0.01) possibly_damaging(0.776) TCGA-QL-A97D-01 2 242405199 242405199 G A FARP2 Intron 0.61 TCGA-QL-A97D-01 2 242758075 242758075 C T NEU4 Missense_Mutation p.R399C 0.10 deleterious(0.01) possibly_damaging(0.854) TCGA-QL-A97D-01 2 58459215 58459215 A C FANCL Silent p.P43P 0.14 TCGA-QL-A97D-01 2 66798893 66798893 T C MEIS1 3'UTR 0.75 TCGA-QL-A97D-01 2 69093007 69093007 G A BMP10 Missense_Mutation p.P344L 0.67 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 2 74326435 74326435 C T TET3 Silent p.C965C 0.60 TCGA-QL-A97D-01 2 84518174 84518174 T A FUNDC2P2 RNA 0.71 TCGA-QL-A97D-01 2 8871598 8871598 T G KIDINS220 Missense_Mutation p.E1523A 0.07 tolerated_low_confidence(0.05) possibly_damaging(0.665) TCGA-QL-A97D-01 3 111693489 111693489 A G PHLDB2 3'UTR 0.17 TCGA-QL-A97D-01 3 13372092 13372092 G A NUP210 Silent p.P1326P 0.47 TCGA-QL-A97D-01 3 137717847 137717847 A T CLDN18 Missense_Mutation p.Y46F 0.07 deleterious(0.03) benign(0.412) TCGA-QL-A97D-01 3 145788912 145788912 G A PLOD2 Nonsense_Mutation p.R680* 0.18 TCGA-QL-A97D-01 3 159482368 159482368 G A IQCJ-SCHIP1 Missense_Mutation p.S143N 0.07 deleterious_low_confidence(0.01) probably_damaging(0.943) TCGA-QL-A97D-01 3 184075226 184075226 G T CLCN2 Missense_Mutation p.N274K 0.29 deleterious(0) probably_damaging(0.99) TCGA-QL-A97D-01 3 184081299 184081299 G T POLR2H Nonsense_Mutation p.E7* 0.37 TCGA-QL-A97D-01 3 195509779 195509779 G T MUC4 Missense_Mutation p.T2891K 0.20 benign(0.007) TCGA-QL-A97D-01 3 196288250 196288250 G C WDR53 Missense_Mutation p.L33V 0.21 tolerated(0.31) possibly_damaging(0.786) TCGA-QL-A97D-01 3 45944479 45944479 A C CCR9 3'UTR 0.31 TCGA-QL-A97D-01 3 49940024 49940024 G A MST1R Missense_Mutation p.A340V 0.07 tolerated(0.27) benign(0.158) TCGA-QL-A97D-01 4 115858506 115858507 AC G NDST4 Frame_Shift_Del p.Y459Tfs*52 0.31 TCGA-QL-A97D-01 4 175564788 175564788 T C GLRA3 3'UTR 0.20 TCGA-QL-A97D-01 4 186379761 186379761 T G CCDC110 Missense_Mutation p.R660S 0.17 deleterious(0) possibly_damaging(0.687) TCGA-QL-A97D-01 4 188924595 188924595 C A ZFP42 Missense_Mutation p.H212N 0.16 deleterious(0) probably_damaging(0.999) TCGA-QL-A97D-01 4 3214337 3214337 G A HTT Silent p.L2225L 0.47 TCGA-QL-A97D-01 4 3257699 3257699 A T MSANTD1 3'UTR 0.24 TCGA-QL-A97D-01 4 3494635 3494635 G A DOK7 Missense_Mutation p.G308R 0.06 tolerated(0.07) possibly_damaging(0.579) TCGA-QL-A97D-01 4 38777060 38777060 G A TLR10 Missense_Mutation p.T51M 0.11 deleterious(0.01) possibly_damaging(0.892) TCGA-QL-A97D-01 4 46067560 46067560 G T GABRG1 Missense_Mutation p.D121E 0.16 deleterious(0) probably_damaging(0.994) TCGA-QL-A97D-01 4 66467689 66467689 T C EPHA5 Missense_Mutation p.K194E 0.56 deleterious(0) probably_damaging(0.987) TCGA-QL-A97D-01 4 80329199 80329199 C T GK2 Nonsense_Mutation p.W52* 0.31 TCGA-QL-A97D-01 4 85504505 85504505 C G CDS1 5'UTR 0.21 TCGA-QL-A97D-01 4 89378630 89378630 G A HERC5 Silent p.G70G 0.42 TCGA-QL-A97D-01 5 112173618 112173625 TAGACAAT - APC Frame_Shift_Del p.D777Kfs*8 0.28 TCGA-QL-A97D-01 5 112175530 112175530 G - APC Frame_Shift_Del p.V1414* 0.16 TCGA-QL-A97D-01 5 122143997 122143997 A T SNX2 Missense_Mutation p.K223N 0.06 tolerated(0.07) possibly_damaging(0.906) TCGA-QL-A97D-01 5 140181751 140181751 G A PCDHA3 Silent p.T323T 0.09 TCGA-QL-A97D-01 5 140209290 140209290 C T PCDHA6 Silent p.R538R 0.53 TCGA-QL-A97D-01 5 140346573 140346573 G T PCDHAC2 Silent p.P74P 0.06 TCGA-QL-A97D-01 5 140431291 140431291 G A PCDHB1 Missense_Mutation p.R79H 0.13 tolerated(0.55) possibly_damaging(0.896) TCGA-QL-A97D-01 5 140590534 140590534 G T PCDHB12 Silent p.S685S 0.12 TCGA-QL-A97D-01 5 140731241 140731241 G A PCDHGB1 Missense_Mutation p.A472T 0.26 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 5 149998286 149998286 C T SYNPO Silent p.A119A 0.03 TCGA-QL-A97D-01 5 156381740 156381740 G A TIMD4 Missense_Mutation p.T29M 0.05 tolerated(0.21) benign(0.329) TCGA-QL-A97D-01 5 15928261 15928261 C G FBXL7 Silent p.P130P 0.31 TCGA-QL-A97D-01 5 178555021 178555021 G T ADAMTS2 Missense_Mutation p.D852E 0.15 tolerated(1) benign(0.009) TCGA-QL-A97D-01 5 179563519 179563519 C T RASGEF1C Intron 0.24 TCGA-QL-A97D-01 5 41149516 41149516 T C C6 Missense_Mutation p.K817R 0.26 tolerated(0.24) benign(0.345) TCGA-QL-A97D-01 5 50683473 50683473 G A ISL1 Missense_Mutation p.R123Q 0.11 tolerated(0.08) possibly_damaging(0.899) TCGA-QL-A97D-01 5 5239346 5239346 C T ADAMTS16 Missense_Mutation p.T746M 0.17 tolerated(0.1) benign(0.067) TCGA-QL-A97D-01 5 524263 524263 C T SLC9A3 Missense_Mutation p.A59T 0.26 deleterious(0.02) benign(0.219) TCGA-QL-A97D-01 5 61897648 61897648 C T IPO11 Silent p.P952P 0.19 TCGA-QL-A97D-01 5 6491551 6491551 G A UBE2QL1 3'UTR 0.25 TCGA-QL-A97D-01 5 66461510 66461510 G C MAST4 Missense_Mutation p.S2168T 0.27 benign(0.013) TCGA-QL-A97D-01 5 74016522 74016523 - AA HEXB Frame_Shift_Ins p.M522Kfs*9 0.10 TCGA-QL-A97D-01 5 79551804 79551804 G A SERINC5 5'UTR 0.10 TCGA-QL-A97D-01 5 79617191 79617191 C T SPZ1 Missense_Mutation p.T386I 0.43 deleterious(0.01) possibly_damaging(0.868) TCGA-QL-A97D-01 5 96215935 96215935 C A ERAP2 Missense_Mutation p.S182R 0.42 deleterious(0.01) probably_damaging(1) TCGA-QL-A97D-01 6 147123973 147123973 A T ADGB Intron 0.11 TCGA-QL-A97D-01 6 150238021 150238021 G T RAET1G 3'UTR 0.23 TCGA-QL-A97D-01 6 150719543 150719543 C T IYD 3'UTR 0.15 TCGA-QL-A97D-01 6 151672843 151672843 T G AKAP12 Missense_Mutation p.F1106C 0.10 tolerated(0.12) possibly_damaging(0.527) TCGA-QL-A97D-01 6 152749493 152749493 G A SYNE1 Missense_Mutation p.A1608V 0.69 benign(0.001) TCGA-QL-A97D-01 6 157099162 157099162 G A ARID1B Silent p.A33A 0.17 TCGA-QL-A97D-01 6 160105908 160105908 C A SOD2 Missense_Mutation p.Q167H 0.22 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 6 22569962 22569962 C G HDGFL1 Missense_Mutation p.P53R 0.19 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 6 24825500 24825500 G A FAM65B Missense_Mutation p.T962M 0.61 tolerated(0.1) benign(0.027) TCGA-QL-A97D-01 6 26091587 26091587 A G HFE Missense_Mutation p.D129G 0.07 deleterious(0.04) benign(0.401) TCGA-QL-A97D-01 6 26451962 26451962 A G BTN3A3 Missense_Mutation p.R360G 0.59 deleterious(0) probably_damaging(0.96) TCGA-QL-A97D-01 6 27114236 27114236 C G HIST1H2BK Missense_Mutation p.E114D 0.40 deleterious_low_confidence(0) benign(0.157) TCGA-QL-A97D-01 6 27279642 27279642 C T POM121L2 Missense_Mutation p.R103Q 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-QL-A97D-01 6 32139316 32139316 G C AGPAT1 Intron 0.19 TCGA-QL-A97D-01 6 32942332 32942332 G A BRD2 Silent p.E41E 0.59 TCGA-QL-A97D-01 6 35479525 35479525 C T TULP1 Silent p.A83A 0.11 TCGA-QL-A97D-01 6 43474823 43474826 CTTC - LRRC73 3'UTR 0.40 TCGA-QL-A97D-01 7 100377162 100377162 C T ZAN Missense_Mutation p.R2137W 0.17 unknown(0) TCGA-QL-A97D-01 7 103061989 103061989 C T SLC26A5 5'UTR 0.17 TCGA-QL-A97D-01 7 105641956 105641956 C T CDHR3 Silent p.I254I 0.33 TCGA-QL-A97D-01 7 116528194 116528194 C A CAPZA2 Missense_Mutation p.A18E 0.13 deleterious(0.01) benign(0.052) TCGA-QL-A97D-01 7 117066973 117066973 A G ASZ1 Missense_Mutation p.L41S 0.10 tolerated(0.38) benign(0.009) TCGA-QL-A97D-01 7 127958108 127958108 A T RBM28 Missense_Mutation p.S539T 0.30 deleterious(0) probably_damaging(0.998) TCGA-QL-A97D-01 7 138595967 138595967 G C KIAA1549 Missense_Mutation p.R1024G 0.06 deleterious(0) probably_damaging(0.998) TCGA-QL-A97D-01 7 143807140 143807140 C G OR2A2 Silent p.S155S 0.07 TCGA-QL-A97D-01 7 14517836 14517836 T A DGKB Silent p.A596A 0.31 TCGA-QL-A97D-01 7 147336218 147336218 G A CNTNAP2 Missense_Mutation p.V640M 0.11 tolerated(0.1) benign(0.311) TCGA-QL-A97D-01 7 1533496 1533496 C T INTS1 Missense_Mutation p.M654I 0.17 tolerated(0.1) benign(0.035) TCGA-QL-A97D-01 7 16817466 16817466 G A TSPAN13 Missense_Mutation p.R119Q 0.28 tolerated(0.24) benign(0.003) TCGA-QL-A97D-01 7 27148283 27148283 G A HOXA3 Missense_Mutation p.R195C 0.12 deleterious(0) possibly_damaging(0.898) TCGA-QL-A97D-01 7 6661804 6661804 C T ZNF853 Silent p.G394G 0.10 TCGA-QL-A97D-01 7 72413596 72413596 G C POM121 Missense_Mutation p.V757L 0.10 tolerated(0.51) benign(0.041) TCGA-QL-A97D-01 7 83640556 83640556 G A SEMA3A Missense_Mutation p.R290C 0.06 deleterious(0) probably_damaging(0.988) TCGA-QL-A97D-01 7 88423665 88423665 C T C7orf62 Missense_Mutation p.D198N 0.36 tolerated(0.1) probably_damaging(0.948) TCGA-QL-A97D-01 7 92963477 92963477 C G CCDC132 Missense_Mutation p.L676V 0.18 tolerated(0.09) possibly_damaging(0.863) TCGA-QL-A97D-01 8 101118127 101118127 G A RGS22 Missense_Mutation p.A8V 0.23 deleterious(0.04) benign(0.001) TCGA-QL-A97D-01 8 145559922 145559922 C T SCRT1 5'UTR 0.23 TCGA-QL-A97D-01 8 1513950 1513950 C T DLGAP2 Silent p.D364D 0.04 TCGA-QL-A97D-01 8 21959340 21959340 G A FAM160B2 Missense_Mutation p.R610H 0.35 deleterious(0.01) benign(0.239) TCGA-QL-A97D-01 8 26149238 26149238 C T PPP2R2A 5'Flank 0.41 TCGA-QL-A97D-01 8 3200945 3200945 G A CSMD1 Missense_Mutation p.R1168C 0.44 possibly_damaging(0.88) TCGA-QL-A97D-01 8 3216689 3216689 G T CSMD1 Missense_Mutation p.L1097M 0.12 probably_damaging(1) TCGA-QL-A97D-01 8 32600203 32600203 G A NRG1 Missense_Mutation p.E215K 0.09 tolerated(0.13) benign(0.078) TCGA-QL-A97D-01 8 52361604 52361604 C T PXDNL Missense_Mutation p.A442T 0.15 deleterious(0.02) possibly_damaging(0.893) TCGA-QL-A97D-01 9 101824574 101824574 G A COL15A1 Silent p.A1193A 0.06 TCGA-QL-A97D-01 9 129458164 129458164 G A LMX1B Silent p.P322P 0.43 TCGA-QL-A97D-01 9 130860860 130860860 C A SLC25A25 Intron 0.14 TCGA-QL-A97D-01 9 135771698 135771698 G A TSC1 Missense_Mutation p.P1140L 0.09 tolerated(0.09) benign(0.005) TCGA-QL-A97D-01 9 137804911 137804911 C T FCN1 Missense_Mutation p.R140Q 0.39 tolerated(0.25) benign(0.02) TCGA-QL-A97D-01 9 138678252 138678252 C T KCNT1 Silent p.A1129A 0.12 TCGA-QL-A97D-01 9 140952637 140952637 A G CACNA1B Missense_Mutation p.I1415V 0.18 deleterious(0.03) probably_damaging(0.986) TCGA-QL-A97D-01 9 141000161 141000161 G A CACNA1B Missense_Mutation p.R1777H 0.12 deleterious(0.02) probably_damaging(0.99) TCGA-QL-A97D-01 9 2647544 2647544 C T VLDLR Missense_Mutation p.R592C 0.12 tolerated(0.06) possibly_damaging(0.766) TCGA-QL-A97D-01 9 40774012 40774012 A T ZNF658 Missense_Mutation p.F421L 0.20 tolerated(0.12) benign(0.002) TCGA-QL-A97D-01 9 5570030 5570030 T A PDCD1LG2 3'UTR 0.21 TCGA-QL-A97D-01 9 77693360 77693360 G A NMRK1 Intron 0.14 TCGA-QL-A97D-01 9 84606724 84606724 C T SPATA31D1 Nonsense_Mutation p.Q447* 0.05 TCGA-QL-A97D-01 X 101138306 101138306 C A ZMAT1 3'UTR 0.33 TCGA-QL-A97D-01 X 105011137 105011137 A C IL1RAPL2 Missense_Mutation p.K515T 0.11 tolerated(0.51) possibly_damaging(0.526) TCGA-QL-A97D-01 X 107849987 107849987 G C COL4A5 Missense_Mutation p.A754P 0.36 unknown(0) TCGA-QL-A97D-01 X 111697992 111697992 G C ZCCHC16 Missense_Mutation p.Q12H 0.08 deleterious(0.01) possibly_damaging(0.875) TCGA-QL-A97D-01 X 11204432 11204432 C T ARHGAP6 Silent p.K399K 0.12 TCGA-QL-A97D-01 X 119388138 119388138 A G ZBTB33 Missense_Mutation p.T290A 0.39 tolerated(0.56) benign(0) TCGA-QL-A97D-01 X 119388643 119388643 G T ZBTB33 Missense_Mutation p.R458I 0.15 deleterious(0) benign(0.177) TCGA-QL-A97D-01 X 125954943 125954943 G A CXorf64 Missense_Mutation p.E108K 0.13 tolerated(0.06) possibly_damaging(0.908) TCGA-QL-A97D-01 X 133303478 133303478 C A MIR363 RNA 0.14 TCGA-QL-A97D-01 X 140994807 140994807 G C MAGEC1 Missense_Mutation p.W539C 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.759) TCGA-QL-A97D-01 X 144906733 144906733 A T SLITRK2 3'UTR 0.13 TCGA-QL-A97D-01 X 146993624 146993624 G A FMR1 5'UTR 0.16 TCGA-QL-A97D-01 X 147967467 147967467 G T AFF2 Missense_Mutation p.E437D 0.37 tolerated(0.09) probably_damaging(0.992) TCGA-QL-A97D-01 X 151909335 151909335 G A CSAG1 3'UTR 0.43 TCGA-QL-A97D-01 X 15266997 15266997 G C ASB9 Missense_Mutation p.A210G 0.49 tolerated(0.27) benign(0.004) TCGA-QL-A97D-01 X 153696199 153696199 G A PLXNA3 Silent p.A1225A 0.30 TCGA-QL-A97D-01 X 155004556 155004556 G A SPRY3 3'UTR 0.08 TCGA-QL-A97D-01 X 155007227 155007227 G A SPRY3 3'UTR 0.32 TCGA-QL-A97D-01 X 16672529 16672529 G T S100G Missense_Mutation p.G46V 0.06 deleterious(0.01) possibly_damaging(0.599) TCGA-QL-A97D-01 X 16707597 16707597 A T CTPS2 Missense_Mutation p.F283Y 0.09 tolerated(0.84) benign(0.001) TCGA-QL-A97D-01 X 2873462 2873462 C T ARSE Missense_Mutation p.R101Q 0.05 deleterious(0) probably_damaging(1) TCGA-QL-A97D-01 X 34962549 34962549 C T FAM47B Missense_Mutation p.A534V 0.44 tolerated(0.13) benign(0.128) TCGA-QL-A97D-01 X 36254883 36254883 C A CXorf30 5'UTR 0.06 TCGA-QL-A97D-01 X 41193442 41193442 C T DDX3X 5'UTR 0.14 TCGA-QL-A97D-01 X 51638586 51638586 C G MAGED1 Nonsense_Mutation p.Y217* 0.27 TCGA-QL-A97D-01 X 54521598 54521598 G A FGD1 Missense_Mutation p.R90C 0.28 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-QL-A97D-01 X 55515239 55515239 G C USP51 Missense_Mutation p.T45R 0.27 tolerated_low_confidence(0.31) unknown(0) TCGA-QL-A97D-01 X 78217264 78217264 C T P2RY10 3'UTR 0.41 TCGA-QL-A97D-01 X 8766452 8766452 T C FAM9A Missense_Mutation p.T97A 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-RU-A8FL-01 10 120488826 120488826 C G CACUL1 Missense_Mutation p.R193T 0.22 tolerated(0.08) benign(0.079) TCGA-RU-A8FL-01 10 120791059 120791059 C T NANOS1 3'UTR 0.30 TCGA-RU-A8FL-01 10 124909106 124909106 G C HMX2 Missense_Mutation p.G97R 0.18 tolerated(0.23) benign(0.068) TCGA-RU-A8FL-01 10 127677350 127677350 A T FANK1 Intron 0.32 TCGA-RU-A8FL-01 10 132891382 132891382 C T TCERG1L 3'UTR 0.58 TCGA-RU-A8FL-01 10 15688906 15688906 C G ITGA8 Silent p.T382T 0.19 TCGA-RU-A8FL-01 10 26505737 26505737 C T GAD2 5'UTR 0.53 TCGA-RU-A8FL-01 10 61112139 61112139 G A FAM13C Missense_Mutation p.A72V 0.51 tolerated_low_confidence(0.05) benign(0) TCGA-RU-A8FL-01 10 64957288 64957288 G A JMJD1C Missense_Mutation p.R1843W 0.44 deleterious(0) probably_damaging(1) TCGA-RU-A8FL-01 10 70728844 70728844 T C DDX21 Silent p.G401G 0.29 TCGA-RU-A8FL-01 10 72298920 72298920 C T PALD1 Missense_Mutation p.R548W 0.48 deleterious(0) probably_damaging(1) TCGA-RU-A8FL-01 10 76978848 76978848 A G VDAC2 Missense_Mutation p.T75A 0.31 tolerated(0.09) benign(0.006) TCGA-RU-A8FL-01 10 7763618 7763618 G A ITIH2 Missense_Mutation p.V249I 0.45 tolerated(0.3) benign(0.008) TCGA-RU-A8FL-01 10 81056302 81056302 C T ZMIZ1 Silent p.N435N 0.54 TCGA-RU-A8FL-01 10 93779 93779 C T TUBB8 Missense_Mutation p.A185T 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.634) TCGA-RU-A8FL-01 11 105483209 105483209 G A GRIA4 Intron 0.67 TCGA-RU-A8FL-01 11 117246440 117246440 G A CEP164 Missense_Mutation p.S417N 0.53 deleterious(0.03) benign(0.036) TCGA-RU-A8FL-01 11 35706876 35706876 G A TRIM44 Missense_Mutation p.D247N 0.43 tolerated(0.33) unknown(0) TCGA-RU-A8FL-01 11 56020329 56020329 T C OR5T3 Silent p.S218S 0.40 TCGA-RU-A8FL-01 11 62290776 62290776 C T AHNAK Missense_Mutation p.V3705M 0.25 benign(0.098) TCGA-RU-A8FL-01 11 63486622 63486622 G C RTN3 Missense_Mutation p.E216D 0.57 tolerated(0.1) benign(0.231) TCGA-RU-A8FL-01 11 64593996 64593996 G A CDC42BPG Silent p.S1515S 0.61 TCGA-RU-A8FL-01 11 66985201 66985201 G A KDM2A Splice_Site p.X230_splice 0.17 TCGA-RU-A8FL-01 11 6790042 6790042 G T OR2AG2 Silent p.I49I 0.44 TCGA-RU-A8FL-01 11 73748692 73748692 G T C2CD3 Silent p.L1904L 0.19 TCGA-RU-A8FL-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.38 tolerated(0.19) benign(0.01) TCGA-RU-A8FL-01 12 10777352 10777352 T G STYK1 Missense_Mutation p.E275A 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-RU-A8FL-01 12 130647642 130647642 T C FZD10 Missense_Mutation p.M52T 0.59 deleterious(0) probably_damaging(0.968) TCGA-RU-A8FL-01 12 132527853 132527871 TCAAGAGTATTGAGTATCT - EP400 Frame_Shift_Del p.L2071Rfs*37 0.20 TCGA-RU-A8FL-01 12 45568187 45568187 T C PLEKHA8P1 RNA 0.24 TCGA-RU-A8FL-01 12 48144867 48144867 C T RAPGEF3 Missense_Mutation p.G212E 0.50 deleterious(0.01) probably_damaging(0.989) TCGA-RU-A8FL-01 12 51399108 51399108 C T SLC11A2 Missense_Mutation p.V128M 0.18 deleterious(0.05) benign(0.149) TCGA-RU-A8FL-01 12 54801439 54801439 G A ITGA5 Silent p.Y300Y 0.22 TCGA-RU-A8FL-01 12 56295986 56295988 CTC - WIBG In_Frame_Del p.E95del 0.34 TCGA-RU-A8FL-01 12 56722277 56722277 C A PAN2 Missense_Mutation p.G144V 0.21 deleterious(0) probably_damaging(0.999) TCGA-RU-A8FL-01 12 62783430 62783430 G A USP15 Missense_Mutation p.A535T 0.27 tolerated(0.23) benign(0.001) TCGA-RU-A8FL-01 12 66597557 66597557 G A IRAK3 Missense_Mutation p.S67N 0.23 deleterious(0) probably_damaging(1) TCGA-RU-A8FL-01 13 110829365 110829365 G T COL4A1 Silent p.G912G 0.14 TCGA-RU-A8FL-01 13 112723541 112723541 A G SOX1 3'UTR 0.17 TCGA-RU-A8FL-01 13 32335879 32335879 C T RXFP2 Missense_Mutation p.A87V 0.14 tolerated(0.24) benign(0.022) TCGA-RU-A8FL-01 14 104642766 104642766 C A KIF26A Missense_Mutation p.P1214Q 0.20 tolerated(0.18) benign(0.439) TCGA-RU-A8FL-01 14 20404104 20404104 C A OR4K1 Silent p.S93S 0.20 TCGA-RU-A8FL-01 14 37969205 37969205 A C MIPOL1 Missense_Mutation p.N375T 0.28 tolerated(0.11) benign(0.117) TCGA-RU-A8FL-01 14 86091307 86091307 G A FLRT2 3'UTR 0.31 TCGA-RU-A8FL-01 15 39886631 39886631 C A THBS1 Nonsense_Mutation p.Y1165* 0.73 TCGA-RU-A8FL-01 15 76136659 76136659 A G UBE2Q2 Intron 0.24 TCGA-RU-A8FL-01 15 83333204 83333204 T A AP3B2 Missense_Mutation p.S707C 0.35 deleterious(0) possibly_damaging(0.7) TCGA-RU-A8FL-01 16 1020931 1020931 C T LMF1 Missense_Mutation p.R17K 0.21 tolerated_low_confidence(0.83) benign(0.001) TCGA-RU-A8FL-01 16 1497533 1497533 G A CLCN7 Missense_Mutation p.R704W 0.18 deleterious(0) possibly_damaging(0.586) TCGA-RU-A8FL-01 16 21654904 21654904 G C IGSF6 Missense_Mutation p.L184V 0.25 tolerated(0.42) benign(0.42) TCGA-RU-A8FL-01 16 28600451 28600451 G A CCDC101 Silent p.A85A 0.18 TCGA-RU-A8FL-01 16 67864548 67864548 C T CENPT Intron 0.38 TCGA-RU-A8FL-01 16 72992027 72992027 C A ZFHX3 Missense_Mutation p.C673F 0.24 probably_damaging(0.991) TCGA-RU-A8FL-01 16 89347410 89347410 G A ANKRD11 Missense_Mutation p.S1847L 0.40 probably_damaging(0.996) TCGA-RU-A8FL-01 17 10299758 10299758 G A MYH8 Silent p.D1514D 0.05 TCGA-RU-A8FL-01 17 10436864 10436864 C T MYH2 Missense_Mutation p.D756N 0.71 deleterious(0.03) benign(0.13) TCGA-RU-A8FL-01 17 18043937 18043937 A T MYO15A Missense_Mutation p.K1773M 0.64 unknown(0) TCGA-RU-A8FL-01 17 28772838 28772838 C T CPD Silent p.T891T 0.17 TCGA-RU-A8FL-01 17 30669187 30669187 T C C17orf75 5'UTR 0.45 TCGA-RU-A8FL-01 17 3765347 3765347 G A CAMKK1 3'Flank 0.75 TCGA-RU-A8FL-01 17 38182488 38182488 G A MED24 Missense_Mutation p.R636C 0.15 deleterious(0) probably_damaging(0.998) TCGA-RU-A8FL-01 17 39240554 39240554 C G KRTAP4-7 Silent p.T32T 0.17 TCGA-RU-A8FL-01 17 39538563 39538563 C G KRT34 Missense_Mutation p.R21T 0.37 deleterious_low_confidence(0.02) benign(0.027) TCGA-RU-A8FL-01 17 58538056 58538056 G T APPBP2 Missense_Mutation p.H343Q 0.40 tolerated(0.14) benign(0.017) TCGA-RU-A8FL-01 17 66596590 66596590 C A FAM20A Missense_Mutation p.R73L 0.06 tolerated(0.09) benign(0.001) TCGA-RU-A8FL-01 17 70119686 70119686 C T SOX9 Nonsense_Mutation p.Q230* 0.40 TCGA-RU-A8FL-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.75 deleterious(0) probably_damaging(0.998) TCGA-RU-A8FL-01 17 9804484 9804484 C T RCVRN Intron 0.29 TCGA-RU-A8FL-01 18 32949559 32949559 G C ZNF396 Missense_Mutation p.L210V 0.30 tolerated(0.38) possibly_damaging(0.801) TCGA-RU-A8FL-01 18 56040494 56040494 T A NEDD4L Missense_Mutation p.F782Y 0.33 deleterious(0.04) probably_damaging(0.984) TCGA-RU-A8FL-01 18 6986296 6986296 A G LAMA1 Missense_Mutation p.L1740P 0.28 deleterious(0.04) benign(0.433) TCGA-RU-A8FL-01 19 1466744 1466744 G A APC2 Silent p.S1148S 0.52 TCGA-RU-A8FL-01 19 35249992 35249992 A T ZNF599 Missense_Mutation p.F572I 0.27 deleterious(0) probably_damaging(0.998) TCGA-RU-A8FL-01 19 36505085 36505085 A C ALKBH6 Silent p.A17A 0.26 TCGA-RU-A8FL-01 19 38572822 38572822 C T SIPA1L3 Missense_Mutation p.S206L 0.82 deleterious(0) probably_damaging(0.999) TCGA-RU-A8FL-01 19 42566746 42566746 C T GRIK5 Silent p.A134A 0.33 TCGA-RU-A8FL-01 19 43772086 43772086 C A PSG9 Missense_Mutation p.A94S 0.06 deleterious(0) possibly_damaging(0.551) TCGA-RU-A8FL-01 19 48058837 48058837 C T ZNF541 Missense_Mutation p.A93T 0.28 tolerated(0.65) benign(0.014) TCGA-RU-A8FL-01 19 52216694 52216694 G A HAS1 Missense_Mutation p.R575C 0.22 deleterious(0.01) unknown(0) TCGA-RU-A8FL-01 19 52219542 52219542 G A HAS1 Missense_Mutation p.T343I 0.22 deleterious(0) possibly_damaging(0.883) TCGA-RU-A8FL-01 19 5456673 5456673 C T ZNRF4 Missense_Mutation p.R391C 0.38 deleterious(0) probably_damaging(0.999) TCGA-RU-A8FL-01 19 57175634 57175634 G A ZNF835 Silent p.C311C 0.53 TCGA-RU-A8FL-01 19 57648317 57648317 G A ZIM3 Silent p.P55P 0.23 TCGA-RU-A8FL-01 1 151028302 151028302 C T CDC42SE1 5'UTR 0.62 TCGA-RU-A8FL-01 1 154164517 154164517 C G TPM3 5'UTR 0.30 TCGA-RU-A8FL-01 1 157504266 157504266 T G FCRL5 Intron 0.11 TCGA-RU-A8FL-01 1 186292850 186292850 C T TPR Missense_Mutation p.A2089T 0.24 benign(0.15) TCGA-RU-A8FL-01 1 228525069 228525069 C T OBSCN Silent p.G6552G 0.45 TCGA-RU-A8FL-01 1 237947552 237947552 C T RYR2 Silent p.G4180G 0.41 TCGA-RU-A8FL-01 1 238053923 238053923 G A ZP4 Missense_Mutation p.R5W 0.23 tolerated(0.19) benign(0.12) TCGA-RU-A8FL-01 1 240370992 240370992 C A FMN2 Silent p.P960P 0.40 TCGA-RU-A8FL-01 1 243716222 243716222 G C AKT3 Silent p.G324G 0.23 TCGA-RU-A8FL-01 1 24792568 24792568 G T NIPAL3 Intron 0.35 TCGA-RU-A8FL-01 1 26801752 26801752 T A HMGN2 3'UTR 0.31 TCGA-RU-A8FL-01 1 29611258 29611258 G A PTPRU Missense_Mutation p.S732N 0.41 tolerated(0.66) benign(0.013) TCGA-RU-A8FL-01 1 36307035 36307035 G A AGO4 Missense_Mutation p.R665Q 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-RU-A8FL-01 1 43829743 43829743 C G ELOVL1 Missense_Mutation p.Q228H 0.33 deleterious(0.01) probably_damaging(1) TCGA-RU-A8FL-01 1 63999320 63999320 G T EFCAB7 Missense_Mutation p.G228C 0.14 deleterious(0) probably_damaging(0.947) TCGA-RU-A8FL-01 1 75609561 75609561 C G LHX8 Silent p.L214L 0.10 TCGA-RU-A8FL-01 1 86889775 86889775 A G CLCA2 5'UTR 0.18 TCGA-RU-A8FL-01 1 949846 949846 C T ISG15 Silent p.G162G 0.47 TCGA-RU-A8FL-01 20 23016315 23016315 C T SSTR4 Silent p.N65N 0.69 TCGA-RU-A8FL-01 20 23334617 23334617 G T NXT1 Splice_Site 0.71 TCGA-RU-A8FL-01 20 25287514 25287514 A G ABHD12 Missense_Mutation p.L302P 0.13 deleterious(0) probably_damaging(0.977) TCGA-RU-A8FL-01 20 30070268 30070268 G A REM1 Missense_Mutation p.R201H 0.62 deleterious(0) probably_damaging(0.993) TCGA-RU-A8FL-01 20 30602871 30602871 C T CCM2L Silent p.V65V 0.24 TCGA-RU-A8FL-01 20 40899060 40899060 G C PTPRT Intron 0.17 TCGA-RU-A8FL-01 21 18971135 18971135 C G BTG3 Missense_Mutation p.E151Q 0.35 deleterious(0) probably_damaging(0.913) TCGA-RU-A8FL-01 21 22664500 22664500 T C NCAM2 Silent p.C186C 0.38 TCGA-RU-A8FL-01 21 28306991 28306991 G T ADAMTS5 Missense_Mutation p.Q495K 0.22 tolerated(0.1) benign(0.029) TCGA-RU-A8FL-01 21 31002942 31002943 - AGA GRIK1-AS2 3'UTR 0.25 TCGA-RU-A8FL-01 21 38605734 38605734 G A DSCR3 Missense_Mutation p.R121C 0.15 deleterious(0) probably_damaging(0.982) TCGA-RU-A8FL-01 22 16449051 16449051 C T OR11H1 Missense_Mutation p.A252T 0.55 deleterious(0.01) probably_damaging(0.998) TCGA-RU-A8FL-01 22 17309556 17309556 C T HSFY1P1 RNA 0.36 TCGA-RU-A8FL-01 22 20079400 20079400 A G DGCR8 Missense_Mutation p.I505V 0.47 deleterious(0.02) benign(0.052) TCGA-RU-A8FL-01 22 23162143 23162143 G A IGLV3-9 Missense_Mutation p.R79Q 0.33 deleterious(0.04) benign(0.338) TCGA-RU-A8FL-01 22 40669466 40669466 C T TNRC6B Silent p.D1001D 0.31 TCGA-RU-A8FL-01 22 45946369 45946369 C A FBLN1 Intron 0.76 TCGA-RU-A8FL-01 22 49103625 49103625 C T FAM19A5 Missense_Mutation p.T120M 0.36 deleterious(0) possibly_damaging(0.69) TCGA-RU-A8FL-01 2 143913206 143913206 C T ARHGAP15 Silent p.V49V 0.39 TCGA-RU-A8FL-01 2 152977198 152977198 A G STAM2 Missense_Mutation p.Y490H 0.35 deleterious_low_confidence(0) benign(0.076) TCGA-RU-A8FL-01 2 189162220 189162220 T G GULP1 Intron 0.19 TCGA-RU-A8FL-01 2 208866155 208866155 C T PLEKHM3 Missense_Mutation p.G70D 0.37 deleterious(0.03) benign(0.046) TCGA-RU-A8FL-01 2 211476889 211476889 C T CPS1 Missense_Mutation p.R820W 0.41 deleterious(0) probably_damaging(1) TCGA-RU-A8FL-01 2 231050781 231050781 G C SP110 Missense_Mutation p.T403S 0.18 tolerated(0.14) possibly_damaging(0.486) TCGA-RU-A8FL-01 2 231134640 231134640 G A SP140 Silent p.T472T 0.45 TCGA-RU-A8FL-01 2 27424907 27424907 C A SLC5A6 Silent p.P437P 0.35 TCGA-RU-A8FL-01 2 44528428 44528428 T G SLC3A1 Intron 0.29 TCGA-RU-A8FL-01 2 5836441 5836441 C T SOX11 3'UTR 0.45 TCGA-RU-A8FL-01 2 63272227 63272227 C T EHBP1 Nonsense_Mutation p.R1173* 0.41 TCGA-RU-A8FL-01 2 89476069 89476069 G A IGKV2-24 Missense_Mutation p.L35F 0.36 tolerated(0.37) benign(0.343) TCGA-RU-A8FL-01 3 121155026 121155026 G - POLQ Frame_Shift_Del p.H2496Tfs*59 0.09 TCGA-RU-A8FL-01 3 13612623 13612623 G A FBLN2 Silent p.A256A 0.43 TCGA-RU-A8FL-01 3 137717828 137717828 G A CLDN18 Missense_Mutation p.V40I 0.25 tolerated(0.58) benign(0.292) TCGA-RU-A8FL-01 3 142051366 142051366 C T XRN1 Missense_Mutation p.R1357Q 0.42 tolerated_low_confidence(0.38) benign(0.001) TCGA-RU-A8FL-01 3 157155382 157155382 C T PTX3 Missense_Mutation p.R71C 0.57 deleterious(0) benign(0.092) TCGA-RU-A8FL-01 3 170244455 170244455 A G SLC7A14 Missense_Mutation p.F91L 0.15 deleterious(0.02) probably_damaging(1) TCGA-RU-A8FL-01 3 172766778 172766778 C T SPATA16 Missense_Mutation p.R240Q 0.28 deleterious(0.03) benign(0.417) TCGA-RU-A8FL-01 3 179437789 179437789 G A USP13 Silent p.A289A 0.21 TCGA-RU-A8FL-01 3 179576897 179576897 T A PEX5L Missense_Mutation p.N259Y 0.32 deleterious(0) possibly_damaging(0.477) TCGA-RU-A8FL-01 3 4358592 4358592 C G SETMAR Missense_Mutation p.L573V 0.20 tolerated_low_confidence(0.33) unknown(0) TCGA-RU-A8FL-01 3 46307563 46307563 G T CCR3 Missense_Mutation p.G326V 0.23 deleterious(0) probably_damaging(0.997) TCGA-RU-A8FL-01 3 46490480 46490480 C T LTF Silent p.A362A 0.29 TCGA-RU-A8FL-01 3 52263955 52263955 G A TWF2 Silent p.G247G 0.47 TCGA-RU-A8FL-01 3 68466480 68466480 C T FAM19A1 Missense_Mutation p.R57C 0.07 deleterious(0) possibly_damaging(0.88) TCGA-RU-A8FL-01 3 93646206 93646206 C T PROS1 Missense_Mutation p.R41H 0.22 deleterious(0.01) benign(0.341) TCGA-RU-A8FL-01 4 144456093 144456093 G T SMARCA5 Missense_Mutation p.G415V 0.06 deleterious(0) probably_damaging(0.992) TCGA-RU-A8FL-01 4 175750018 175750018 C A GLRA3 5'UTR 0.64 TCGA-RU-A8FL-01 4 178262720 178262720 C T NEIL3 Missense_Mutation p.R265C 0.29 deleterious(0) probably_damaging(1) TCGA-RU-A8FL-01 4 24585993 24585993 G T DHX15 Missense_Mutation p.D8E 0.29 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-RU-A8FL-01 4 3176682 3176682 C A HTT Missense_Mutation p.H1419N 0.10 probably_damaging(0.996) TCGA-RU-A8FL-01 4 48524956 48524956 C T FRYL Missense_Mutation p.A2495T 0.22 tolerated(0.58) benign(0.097) TCGA-RU-A8FL-01 4 52765438 52765438 G T DCUN1D4 Missense_Mutation p.C170F 0.09 deleterious(0) probably_damaging(0.977) TCGA-RU-A8FL-01 4 55604660 55604660 G A KIT Silent p.R956R 0.72 TCGA-RU-A8FL-01 4 57220235 57220235 G C AASDH Silent p.G451G 0.68 TCGA-RU-A8FL-01 4 83552589 83552589 G C SCD5 Missense_Mutation p.T295S 0.17 deleterious(0.03) benign(0.132) TCGA-RU-A8FL-01 4 88035923 88035923 C T AFF1 Silent p.S646S 0.77 TCGA-RU-A8FL-01 4 94436441 94436441 T C GRID2 Missense_Mutation p.V691A 0.63 deleterious(0.01) probably_damaging(0.947) TCGA-RU-A8FL-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.31 TCGA-RU-A8FL-01 5 112175757 112175758 - A APC Frame_Shift_Ins p.H1490Tfs*24 0.18 TCGA-RU-A8FL-01 5 140229785 140229785 C T PCDHA9 Missense_Mutation p.R569W 0.58 tolerated_low_confidence(0.19) benign(0.002) TCGA-RU-A8FL-01 5 140626943 140626943 C T PCDHB15 Silent p.N599N 0.29 TCGA-RU-A8FL-01 5 150901390 150901390 G C FAT2 Missense_Mutation p.I3588M 0.32 possibly_damaging(0.896) TCGA-RU-A8FL-01 5 177099046 177099046 G A RP11-1277A3.2 RNA 0.30 TCGA-RU-A8FL-01 5 36035616 36035616 T G UGT3A2 3'UTR 0.43 TCGA-RU-A8FL-01 5 38458491 38458491 C T EGFLAM Silent p.A930A 0.17 TCGA-RU-A8FL-01 5 40767733 40767733 A T PRKAA1 Nonsense_Mutation p.L234* 0.39 TCGA-RU-A8FL-01 5 72364551 72364553 TTC - FCHO2 In_Frame_Del p.S511del 0.15 TCGA-RU-A8FL-01 5 77523310 77523311 - T AP3B1 Frame_Shift_Ins p.S141Kfs*3 0.30 TCGA-RU-A8FL-01 5 79617466 79617466 G A SPZ1 3'UTR 0.17 TCGA-RU-A8FL-01 6 10687226 10687226 G C C6orf52 Missense_Mutation p.H81Q 0.41 tolerated(0.26) benign(0.013) TCGA-RU-A8FL-01 6 127837160 127837160 G T SOGA3 Silent p.G200G 0.29 TCGA-RU-A8FL-01 6 132910626 132910626 G C TAAR5 Missense_Mutation p.T67R 0.37 deleterious(0) possibly_damaging(0.804) TCGA-RU-A8FL-01 6 148867239 148867239 A G SASH1 Missense_Mutation p.D1146G 0.51 deleterious(0) probably_damaging(0.998) TCGA-RU-A8FL-01 6 158613079 158613079 C T GTF2H5 Nonsense_Mutation p.Q36* 0.18 TCGA-RU-A8FL-01 6 160169331 160169331 C G WTAP Missense_Mutation p.L128V 0.16 tolerated(0.25) possibly_damaging(0.8) TCGA-RU-A8FL-01 6 21598437 21598437 G A SOX4 3'UTR 0.32 TCGA-RU-A8FL-01 6 25106591 25106591 C A CMAHP RNA 0.47 TCGA-RU-A8FL-01 6 27841233 27841233 T G HIST1H4L Missense_Mutation p.H19P 0.33 deleterious(0.02) unknown(0) TCGA-RU-A8FL-01 6 30229180 30229180 G A HCG17 Intron 0.21 TCGA-RU-A8FL-01 6 37605120 37605120 G - MDGA1 3'UTR 0.10 TCGA-RU-A8FL-01 6 50811133 50811133 G A TFAP2B 3'UTR 0.42 TCGA-RU-A8FL-01 6 51637545 51637545 T G PKHD1 Missense_Mutation p.N2866T 0.07 tolerated(0.59) benign(0.004) TCGA-RU-A8FL-01 6 69349227 69349227 A T BAI3 Missense_Mutation p.L220F 0.36 tolerated(0.72) probably_damaging(0.979) TCGA-RU-A8FL-01 6 75861640 75861640 C T COL12A1 Missense_Mutation p.D1315N 0.44 probably_damaging(0.999) TCGA-RU-A8FL-01 6 78172029 78172029 G T HTR1B Silent p.I364I 0.31 TCGA-RU-A8FL-01 6 80201440 80201440 G A LCA5 Silent p.C321C 0.50 TCGA-RU-A8FL-01 6 84569422 84569422 C T CYB5R4 5'UTR 0.43 TCGA-RU-A8FL-01 6 97058489 97058489 G C FHL5 Missense_Mutation p.W182C 0.41 deleterious(0) probably_damaging(1) TCGA-RU-A8FL-01 6 9939556 9939556 C A OFCC1 5'Flank 0.50 TCGA-RU-A8FL-01 7 107832207 107832207 G A NRCAM Silent p.D623D 0.20 TCGA-RU-A8FL-01 7 121682675 121682675 A C PTPRZ1 Silent p.R1939R 0.06 TCGA-RU-A8FL-01 7 123593863 123593863 G A SPAM1 Missense_Mutation p.R80Q 0.46 tolerated(0.49) benign(0.153) TCGA-RU-A8FL-01 7 128494568 128494568 C T FLNC Missense_Mutation p.R2277C 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-RU-A8FL-01 7 21583023 21583023 G A DNAH11 Missense_Mutation p.A54T 0.49 benign(0.165) TCGA-RU-A8FL-01 7 44268774 44268774 C T CAMK2B Intron 0.43 TCGA-RU-A8FL-01 7 87856306 87856306 A G SRI 5'UTR 0.41 TCGA-RU-A8FL-01 7 90894729 90894729 C G FZD1 Silent p.T178T 0.21 TCGA-RU-A8FL-01 7 91712707 91712707 C T AKAP9 Missense_Mutation p.P2795L 0.37 benign(0.014) TCGA-RU-A8FL-01 8 101299841 101299841 T A RNF19A Missense_Mutation p.I188F 0.21 deleterious(0) probably_damaging(0.981) TCGA-RU-A8FL-01 8 110463325 110463325 G A PKHD1L1 Silent p.K2099K 0.87 TCGA-RU-A8FL-01 8 135614002 135614002 G A ZFAT Silent p.L654L 0.84 TCGA-RU-A8FL-01 8 139151229 139151229 C T FAM135B Missense_Mutation p.G1301R 0.19 deleterious(0) probably_damaging(0.974) TCGA-RU-A8FL-01 8 139151271 139151271 C T FAM135B Missense_Mutation p.D1287N 0.26 deleterious(0.02) probably_damaging(0.909) TCGA-RU-A8FL-01 8 143747434 143747434 C T JRK RNA 0.16 TCGA-RU-A8FL-01 8 38848822 38848822 G A TM2D2 3'UTR 0.35 TCGA-RU-A8FL-01 8 53452415 53452415 T G FAM150A Missense_Mutation p.T101P 0.37 deleterious(0) probably_damaging(0.999) TCGA-RU-A8FL-01 8 55541708 55541708 A G RP1 Missense_Mutation p.M1756V 0.04 tolerated(1) benign(0) TCGA-RU-A8FL-01 9 38398045 38398045 C G ALDH1B1 3'UTR 0.07 TCGA-RU-A8FL-01 9 446476 446476 C G DOCK8 Missense_Mutation p.T1896S 0.16 tolerated(0.11) probably_damaging(0.999) TCGA-RU-A8FL-01 9 85605364 85605364 A G RASEF Missense_Mutation p.C687R 0.16 deleterious(0) probably_damaging(0.995) TCGA-RU-A8FL-01 X 104463752 104463752 C T TEX13A Missense_Mutation p.R375H 0.80 tolerated(0.1) possibly_damaging(0.84) TCGA-RU-A8FL-01 X 107977876 107977876 C T IRS4 Missense_Mutation p.G567R 0.24 tolerated_low_confidence(0.06) unknown(0) TCGA-RU-A8FL-01 X 138724646 138724646 A G MCF2 Intron 0.06 TCGA-RU-A8FL-01 X 1414346 1414346 A T CSF2RA Silent p.L269L 0.34 TCGA-SS-A7HO-01 10 104592875 104592875 G A CYP17A1 Nonsense_Mutation p.Q282* 0.26 TCGA-SS-A7HO-01 10 118451919 118451919 C T HSPA12A Silent p.T202T 0.29 TCGA-SS-A7HO-01 10 128974246 128974246 G A FAM196A Silent p.S138S 0.25 TCGA-SS-A7HO-01 10 128974247 128974247 C A FAM196A Missense_Mutation p.S138I 0.26 deleterious(0.01) possibly_damaging(0.691) TCGA-SS-A7HO-01 10 135053593 135053593 C T VENTX Missense_Mutation p.A187V 0.68 deleterious(0) possibly_damaging(0.76) TCGA-SS-A7HO-01 10 35456597 35456597 C T CREM Intron 0.55 TCGA-SS-A7HO-01 10 7759626 7759626 G T ITIH2 Missense_Mutation p.V169L 0.53 tolerated(0.1) benign(0.075) TCGA-SS-A7HO-01 10 82369203 82369203 G A SH2D4B Missense_Mutation p.R294H 0.59 tolerated(0.05) possibly_damaging(0.66) TCGA-SS-A7HO-01 10 88769011 88769011 C - RP11-96C23.10 3'Flank 0.18 TCGA-SS-A7HO-01 11 100061951 100061951 T C CNTN5 Silent p.G558G 0.43 TCGA-SS-A7HO-01 11 105836749 105836749 C T GRIA4 Intron 0.43 TCGA-SS-A7HO-01 11 110451355 110451355 G A ARHGAP20 Missense_Mutation p.A772V 0.21 deleterious(0.05) benign(0.11) TCGA-SS-A7HO-01 11 111166986 111166986 G T COLCA1 Missense_Mutation p.T73N 0.21 possibly_damaging(0.607) TCGA-SS-A7HO-01 11 113813736 113813736 C T HTR3B Silent p.V243V 0.50 TCGA-SS-A7HO-01 11 122830006 122830006 T A C11orf63 Silent p.T730T 0.45 TCGA-SS-A7HO-01 11 123894541 123894541 C A OR10G9 Missense_Mutation p.F274L 0.49 tolerated(0.48) probably_damaging(0.999) TCGA-SS-A7HO-01 11 124412936 124412936 G A OR8B12 Silent p.D205D 0.42 TCGA-SS-A7HO-01 11 17632459 17632459 G T OTOG Missense_Mutation p.G1883V 0.51 benign(0.006) TCGA-SS-A7HO-01 11 44129412 44129412 C T EXT2 Silent p.I83I 0.39 TCGA-SS-A7HO-01 11 46332741 46332741 G A CREB3L1 Splice_Site p.X251_splice 0.38 TCGA-SS-A7HO-01 11 47741488 47741488 G A FNBP4 Silent p.L986L 0.46 TCGA-SS-A7HO-01 11 47741489 47741489 C A FNBP4 Missense_Mutation p.Q985H 0.46 deleterious(0) probably_damaging(0.998) TCGA-SS-A7HO-01 11 606507 606507 G A PHRF1 Missense_Mutation p.G506D 0.45 deleterious(0) probably_damaging(1) TCGA-SS-A7HO-01 11 626763 626763 G A SCT Missense_Mutation p.A67V 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.739) TCGA-SS-A7HO-01 11 65422110 65422110 G A RELA Silent p.D465D 0.40 TCGA-SS-A7HO-01 11 66033456 66033456 C T KLC2 Silent p.D525D 0.42 TCGA-SS-A7HO-01 11 71944710 71944710 G A INPPL1 Missense_Mutation p.D712N 0.23 deleterious(0) probably_damaging(0.999) TCGA-SS-A7HO-01 11 73021274 73021274 C T ARHGEF17 Missense_Mutation p.R531C 0.65 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-SS-A7HO-01 11 82959101 82959101 A T ANKRD42 3'UTR 0.42 TCGA-SS-A7HO-01 11 93171017 93171017 A T CCDC67 3'UTR 0.21 TCGA-SS-A7HO-01 11 93862563 93862563 C T PANX1 Nonsense_Mutation p.R29* 0.46 TCGA-SS-A7HO-01 11 94602563 94602563 G A AMOTL1 Missense_Mutation p.G897S 0.50 tolerated(0.23) benign(0.01) TCGA-SS-A7HO-01 12 105534714 105534714 G A KIAA1033 Missense_Mutation p.R533H 0.55 tolerated(0.17) benign(0.176) TCGA-SS-A7HO-01 12 132502101 132502101 C T EP400 Silent p.S1315S 0.51 TCGA-SS-A7HO-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.49 deleterious(0.02) possibly_damaging(0.773) TCGA-SS-A7HO-01 12 45169928 45169928 A G NELL2 Silent p.S306S 0.22 TCGA-SS-A7HO-01 12 46215250 46215250 A T ARID2 Missense_Mutation p.T229S 0.41 tolerated(0.44) benign(0.206) TCGA-SS-A7HO-01 12 49231156 49231156 G T DDX23 Silent p.I258I 0.06 TCGA-SS-A7HO-01 12 51100339 51100339 G T DIP2B Missense_Mutation p.V809F 0.34 deleterious(0) probably_damaging(0.993) TCGA-SS-A7HO-01 12 54801439 54801442 GTAA - ITGA5 Frame_Shift_Del p.Y300Afs*75 0.44 TCGA-SS-A7HO-01 12 56676693 56676693 T C CS Missense_Mutation p.E117G 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-SS-A7HO-01 12 70949694 70949694 A T PTPRB Missense_Mutation p.M1650K 0.28 tolerated(0.24) benign(0.007) TCGA-SS-A7HO-01 12 8608672 8608672 G A CLEC6A 5'UTR 0.19 TCGA-SS-A7HO-01 13 106142252 106142252 T C DAOA Missense_Mutation p.L95P 0.26 deleterious_low_confidence(0.05) possibly_damaging(0.883) TCGA-SS-A7HO-01 13 114288257 114288257 T A TFDP1 Missense_Mutation p.L176Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-SS-A7HO-01 13 24465974 24465974 G T C1QTNF9B Silent p.G152G 0.23 TCGA-SS-A7HO-01 13 26788233 26788233 C A RNF6 Nonsense_Mutation p.E596* 0.35 TCGA-SS-A7HO-01 13 32798469 32798469 C T FRY Silent p.A1621A 0.26 TCGA-SS-A7HO-01 14 21501964 21501964 A G RP11-998D10.1 Silent p.G100G 0.87 TCGA-SS-A7HO-01 14 28734206 28734206 G A BNIP3P1 RNA 0.85 TCGA-SS-A7HO-01 14 31598563 31598563 G A HECTD1 Silent p.Y1338Y 0.05 TCGA-SS-A7HO-01 14 61115424 61115424 C T SIX1 Missense_Mutation p.G162S 0.36 deleterious(0.01) possibly_damaging(0.87) TCGA-SS-A7HO-01 14 74180238 74180238 G A PNMA1 Silent p.I35I 0.83 TCGA-SS-A7HO-01 14 86092850 86092850 G T FLRT2 3'UTR 0.44 TCGA-SS-A7HO-01 15 20170065 20170065 C A IGHV1OR15-9 Missense_Mutation p.L69F 0.46 tolerated(0.62) benign(0.103) TCGA-SS-A7HO-01 15 30025374 30025374 G A TJP1 Silent p.L554L 0.09 TCGA-SS-A7HO-01 15 34355684 34355684 T A CHRM5 Missense_Mutation p.C256S 0.50 tolerated(0.43) possibly_damaging(0.751) TCGA-SS-A7HO-01 15 43816619 43816619 G A MAP1A Missense_Mutation p.R983Q 0.41 probably_damaging(0.998) TCGA-SS-A7HO-01 15 51216182 51216182 T A AP4E1 Missense_Mutation p.L134H 0.42 deleterious(0) probably_damaging(1) TCGA-SS-A7HO-01 15 54307451 54307451 G A UNC13C Missense_Mutation p.S784N 0.12 tolerated_low_confidence(0.05) probably_damaging(0.993) TCGA-SS-A7HO-01 15 64386069 64386069 G T FAM96A 5'UTR 0.16 TCGA-SS-A7HO-01 15 79589562 79589562 C T ANKRD34C 3'UTR 0.34 TCGA-SS-A7HO-01 15 91295100 91295100 G T BLM Missense_Mutation p.D295Y 0.39 deleterious(0.02) probably_damaging(0.969) TCGA-SS-A7HO-01 16 24202498 24202498 G T PRKCB Missense_Mutation p.D604Y 0.49 deleterious(0) probably_damaging(0.995) TCGA-SS-A7HO-01 16 31419780 31419780 C T ITGAD Silent p.H348H 0.93 TCGA-SS-A7HO-01 16 48177911 48177911 G A ABCC12 Missense_Mutation p.P62L 0.90 deleterious(0) benign(0.439) TCGA-SS-A7HO-01 16 58712317 58712317 C T SLC38A7 Silent p.K177K 0.87 TCGA-SS-A7HO-01 16 70432148 70432148 C A ST3GAL2 Missense_Mutation p.V96F 0.95 probably_damaging(0.983) TCGA-SS-A7HO-01 16 81298255 81298255 G A BCMO1 Missense_Mutation p.R161H 0.15 tolerated(0.22) benign(0.244) TCGA-SS-A7HO-01 16 84214787 84214787 C T TAF1C Silent p.P416P 0.87 TCGA-SS-A7HO-01 16 87678450 87678450 C T JPH3 Silent p.Y323Y 0.94 TCGA-SS-A7HO-01 16 89661857 89661857 G C CPNE7 Missense_Mutation p.R537P 0.23 deleterious(0.04) possibly_damaging(0.579) TCGA-SS-A7HO-01 17 14110399 14110399 G A COX10 Missense_Mutation p.V401M 0.78 deleterious(0.02) benign(0.028) TCGA-SS-A7HO-01 17 27028528 27028528 G A SUPT6H Missense_Mutation p.R1689Q 0.22 tolerated(0.21) benign(0.004) TCGA-SS-A7HO-01 17 39324254 39324254 G A KRTAP4-3 Silent p.S57S 0.26 TCGA-SS-A7HO-01 17 39324284 39324284 G A KRTAP4-3 Silent p.S47S 0.26 TCGA-SS-A7HO-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.54 deleterious(0.01) possibly_damaging(0.655) TCGA-SS-A7HO-01 17 40818688 40818688 G A TUBG2 Missense_Mutation p.R409H 0.27 deleterious(0) benign(0.446) TCGA-SS-A7HO-01 17 53398084 53398084 C T HLF Silent p.D244D 0.22 TCGA-SS-A7HO-01 17 57889047 57889047 T A VMP1 Missense_Mutation p.F271Y 0.20 deleterious(0) possibly_damaging(0.652) TCGA-SS-A7HO-01 17 7096857 7096857 G A DLG4 Silent p.R589R 0.84 TCGA-SS-A7HO-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.86 deleterious(0) probably_damaging(0.993) TCGA-SS-A7HO-01 17 77707317 77707317 G A ENPP7 Missense_Mutation p.E89K 0.49 deleterious(0.03) possibly_damaging(0.858) TCGA-SS-A7HO-01 17 77752046 77752046 G T CBX2 Silent p.L4L 0.10 TCGA-SS-A7HO-01 17 77811688 77811688 C T CBX4 Missense_Mutation p.E43K 0.07 deleterious(0) probably_damaging(0.989) TCGA-SS-A7HO-01 19 1481732 1481732 C A PCSK4 3'UTR 0.82 TCGA-SS-A7HO-01 19 17955080 17955080 C T JAK3 Silent p.L49L 0.90 TCGA-SS-A7HO-01 19 31768038 31768038 G A TSHZ3 Silent p.P887P 0.30 TCGA-SS-A7HO-01 19 33695755 33695755 C T LRP3 Nonsense_Mutation p.R158* 0.20 TCGA-SS-A7HO-01 19 36362774 36362774 G C APLP1 Missense_Mutation p.R229P 0.23 tolerated(0.27) probably_damaging(0.95) TCGA-SS-A7HO-01 19 41019233 41019233 G A SPTBN4 Missense_Mutation p.G846E 0.22 tolerated(0.41) benign(0.33) TCGA-SS-A7HO-01 19 41854274 41854274 C T TGFB1 Missense_Mutation p.V148M 0.25 tolerated(0.12) benign(0.01) TCGA-SS-A7HO-01 19 44739593 44739593 C T ZNF227 Missense_Mutation p.T337M 0.45 deleterious(0.01) probably_damaging(0.92) TCGA-SS-A7HO-01 19 47823934 47823934 C T C5AR1 Silent p.Y300Y 0.17 TCGA-SS-A7HO-01 19 48866695 48866695 C A TMEM143 Silent p.G39G 0.18 TCGA-SS-A7HO-01 19 50334130 50334130 G A MED25 Missense_Mutation p.G363R 0.20 tolerated(0.06) benign(0.103) TCGA-SS-A7HO-01 19 51883762 51883762 C T LIM2 Missense_Mutation p.A195T 0.87 tolerated(0.06) probably_damaging(0.927) TCGA-SS-A7HO-01 19 54822538 54822538 T C LILRA5 Intron 0.14 TCGA-SS-A7HO-01 19 56114359 56114359 C T ZNF524 3'UTR 0.07 TCGA-SS-A7HO-01 19 56499442 56499442 C A NLRP8 3'UTR 0.38 TCGA-SS-A7HO-01 19 9071700 9071700 G T MUC16 Missense_Mutation p.T5249K 0.89 unknown(0) TCGA-SS-A7HO-01 1 110050346 110050346 G A AMIGO1 Missense_Mutation p.R397C 0.30 tolerated(0.06) benign(0.363) TCGA-SS-A7HO-01 1 149399158 149399158 C T HIST2H3PS2 3'Flank 0.32 TCGA-SS-A7HO-01 1 158325092 158325092 C A CD1E Missense_Mutation p.P120T 0.23 deleterious(0.01) possibly_damaging(0.861) TCGA-SS-A7HO-01 1 158325265 158325265 T C CD1E Silent p.D177D 0.23 TCGA-SS-A7HO-01 1 158576905 158576905 T A OR10Z1 Missense_Mutation p.L226Q 0.54 deleterious(0) probably_damaging(0.951) TCGA-SS-A7HO-01 1 169509841 169509841 G A F5 Missense_Mutation p.P1496L 0.32 deleterious(0) possibly_damaging(0.454) TCGA-SS-A7HO-01 1 185703900 185703900 A - HMCN1 5'UTR 0.50 TCGA-SS-A7HO-01 1 213181619 213181619 C T ANGEL2 Missense_Mutation p.R192Q 0.28 tolerated(0.51) benign(0.014) TCGA-SS-A7HO-01 1 216260091 216260091 G A USH2A Nonsense_Mutation p.R1653* 0.56 TCGA-SS-A7HO-01 1 240071128 240071128 C T CHRM3 Missense_Mutation p.T126M 0.29 deleterious(0) probably_damaging(0.997) TCGA-SS-A7HO-01 1 247769267 247769267 G T OR2G3 Missense_Mutation p.C127F 0.27 deleterious(0) probably_damaging(0.999) TCGA-SS-A7HO-01 1 36319147 36319147 G A AGO4 Missense_Mutation p.A843T 0.26 tolerated(0.15) benign(0.077) TCGA-SS-A7HO-01 1 3644196 3644196 C T TP73 Nonsense_Mutation p.Q283* 0.56 TCGA-SS-A7HO-01 1 71418647 71418647 C T PTGER3 Silent p.E400E 0.30 TCGA-SS-A7HO-01 1 86921373 86921373 T G CLCA2 3'UTR 0.30 TCGA-SS-A7HO-01 20 33879853 33879853 C A FAM83C Silent p.V85V 0.20 TCGA-SS-A7HO-01 20 44511339 44511339 T C ZSWIM1 Silent p.N36N 0.95 TCGA-SS-A7HO-01 20 47630224 47630224 C T ARFGEF2 Nonsense_Mutation p.R1348* 0.15 TCGA-SS-A7HO-01 20 48472032 48472032 C A SLC9A8 Missense_Mutation p.F225L 0.15 deleterious(0) possibly_damaging(0.803) TCGA-SS-A7HO-01 20 55803346 55803346 G A BMP7 Missense_Mutation p.R184C 0.92 tolerated(0.07) probably_damaging(0.912) TCGA-SS-A7HO-01 21 30934057 30934057 G A GRIK1 Silent p.Y748Y 0.38 TCGA-SS-A7HO-01 21 33368171 33368171 C A HUNK Missense_Mutation p.Q466K 0.34 deleterious_low_confidence(0.04) benign(0.05) TCGA-SS-A7HO-01 22 19044527 19044527 G A DGCR2 Silent p.Y258Y 0.26 TCGA-SS-A7HO-01 22 23438273 23438273 C A GNAZ Missense_Mutation p.L131I 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-SS-A7HO-01 22 38167680 38167680 C T TRIOBP Silent p.N2291N 0.46 TCGA-SS-A7HO-01 22 46679879 46679879 A T TTC38 Missense_Mutation p.M249L 0.56 tolerated(0.21) benign(0.008) TCGA-SS-A7HO-01 22 50278319 50278319 G A ZBED4 Missense_Mutation p.A337T 0.45 tolerated(0.21) benign(0.069) TCGA-SS-A7HO-01 2 114355092 114355092 C T WASH2P RNA 0.15 TCGA-SS-A7HO-01 2 130910227 130910227 G A SMPD4 Silent p.V834V 0.48 TCGA-SS-A7HO-01 2 135710846 135710846 A T CCNT2 Missense_Mutation p.E274V 0.13 deleterious(0) benign(0.312) TCGA-SS-A7HO-01 2 136627885 136627885 G A MCM6 Missense_Mutation p.R101C 0.48 tolerated(0.14) possibly_damaging(0.462) TCGA-SS-A7HO-01 2 148683720 148683720 A C ACVR2A Missense_Mutation p.Q446P 0.36 tolerated(0.09) possibly_damaging(0.776) TCGA-SS-A7HO-01 2 166188073 166188073 A T SCN2A Missense_Mutation p.N795Y 0.39 deleterious(0) probably_damaging(1) TCGA-SS-A7HO-01 2 170025133 170025133 T A LRP2 Missense_Mutation p.N3851Y 0.11 probably_damaging(1) TCGA-SS-A7HO-01 2 175612913 175612913 C A CHRNA1 Missense_Mutation p.C463F 0.56 deleterious(0) probably_damaging(0.971) TCGA-SS-A7HO-01 2 177016440 177016440 G A HOXD4 Missense_Mutation p.G27S 0.53 tolerated(0.78) benign(0.002) TCGA-SS-A7HO-01 2 188216991 188216991 C T CALCRL Silent p.A326A 0.13 TCGA-SS-A7HO-01 2 191159316 191159316 T A HIBCH Missense_Mutation p.K87M 0.44 deleterious(0) probably_damaging(0.988) TCGA-SS-A7HO-01 2 202257712 202257712 C T TRAK2 Missense_Mutation p.E345K 0.33 deleterious(0.02) probably_damaging(0.951) TCGA-SS-A7HO-01 2 204111587 204111587 G A CYP20A1 Missense_Mutation p.V78M 0.44 deleterious(0) probably_damaging(0.998) TCGA-SS-A7HO-01 2 209292981 209292981 C T PTH2R Missense_Mutation p.A44V 0.36 tolerated(0.09) benign(0.271) TCGA-SS-A7HO-01 2 238671255 238671255 G C LRRFIP1 Missense_Mutation p.S300T 0.37 tolerated(0.37) benign(0.034) TCGA-SS-A7HO-01 2 25966000 25966000 G A ASXL2 Missense_Mutation p.T1069I 0.03 deleterious(0) probably_damaging(0.955) TCGA-SS-A7HO-01 2 39417607 39417607 C T CDKL4 Missense_Mutation p.R164K 0.43 deleterious(0) possibly_damaging(0.816) TCGA-SS-A7HO-01 2 97372989 97372989 G C LMAN2L 3'UTR 0.05 TCGA-SS-A7HO-01 3 101039272 101039272 A T IMPG2 5'UTR 0.21 TCGA-SS-A7HO-01 3 121186480 121186480 A - POLQ Frame_Shift_Del p.Y2285Ifs*7 0.27 TCGA-SS-A7HO-01 3 126062427 126062427 C A KLF15 3'UTR 0.41 TCGA-SS-A7HO-01 3 142521011 142521011 A C TRPC1 Missense_Mutation p.I528L 0.46 deleterious(0.02) possibly_damaging(0.511) TCGA-SS-A7HO-01 3 148897422 148897422 A T CP Missense_Mutation p.I861N 0.36 deleterious(0) probably_damaging(1) TCGA-SS-A7HO-01 3 184098559 184098559 C T CHRD Silent p.R76R 0.36 TCGA-SS-A7HO-01 3 3144358 3144358 C T IL5RA Splice_Site p.X76_splice 0.42 TCGA-SS-A7HO-01 3 38155849 38155849 C T DLEC1 Missense_Mutation p.P1228L 0.42 deleterious(0.04) benign(0.038) TCGA-SS-A7HO-01 3 38835458 38835458 C T SCN10A Missense_Mutation p.R15H 0.44 tolerated(0.21) possibly_damaging(0.628) TCGA-SS-A7HO-01 3 49688057 49688058 CT - BSN Frame_Shift_Del p.C512Sfs*85 0.31 TCGA-SS-A7HO-01 3 51746829 51746829 G A GRM2 Missense_Mutation p.R264H 0.46 deleterious(0.03) benign(0.219) TCGA-SS-A7HO-01 3 64084548 64084548 G T PRICKLE2 3'UTR 0.09 TCGA-SS-A7HO-01 4 104041347 104041347 A C CENPE Missense_Mutation p.N2429K 0.26 possibly_damaging(0.621) TCGA-SS-A7HO-01 4 122800926 122800926 C A TRPC3 Nonsense_Mutation p.E911* 0.56 TCGA-SS-A7HO-01 4 123192523 123192523 A C KIAA1109 Missense_Mutation p.D2615A 0.50 benign(0.114) TCGA-SS-A7HO-01 4 155156896 155156896 C G DCHS2 Missense_Mutation p.A2515P 0.28 deleterious(0) possibly_damaging(0.878) TCGA-SS-A7HO-01 4 169393616 169393616 G C DDX60L Missense_Mutation p.P22A 0.23 tolerated(0.25) benign(0.034) TCGA-SS-A7HO-01 4 183602989 183602989 T C TENM3 Silent p.C619C 0.21 TCGA-SS-A7HO-01 4 5418574 5418574 C A STK32B Missense_Mutation p.H159N 0.53 deleterious(0) possibly_damaging(0.799) TCGA-SS-A7HO-01 4 57677904 57677904 A C SPINK2 Missense_Mutation p.C52W 0.50 deleterious(0) probably_damaging(1) TCGA-SS-A7HO-01 4 73013164 73013164 G A NPFFR2 Missense_Mutation p.A402T 0.06 tolerated(0.1) benign(0.379) TCGA-SS-A7HO-01 4 96140170 96140170 G C UNC5C Missense_Mutation p.A532G 0.29 deleterious(0) possibly_damaging(0.854) TCGA-SS-A7HO-01 5 112154723 112154723 C T APC Nonsense_Mutation p.R332* 0.90 TCGA-SS-A7HO-01 5 112175936 112175936 C T APC Nonsense_Mutation p.Q1549* 0.87 TCGA-SS-A7HO-01 5 112179500 112179500 G C APC Missense_Mutation p.E2737Q 0.42 possibly_damaging(0.73) TCGA-SS-A7HO-01 5 1216785 1216785 G A SLC6A19 Missense_Mutation p.D334N 0.34 tolerated(0.14) probably_damaging(1) TCGA-SS-A7HO-01 5 131679624 131679624 T C SLC22A4 3'UTR 0.86 TCGA-SS-A7HO-01 5 140605549 140605549 G A PCDHB14 3'UTR 0.45 TCGA-SS-A7HO-01 5 140751469 140751469 C T PCDHGB3 Missense_Mutation p.S503F 0.34 deleterious(0.01) probably_damaging(0.936) TCGA-SS-A7HO-01 5 140774290 140774290 C T PCDHGA8 Missense_Mutation p.A637V 0.89 deleterious_low_confidence(0.02) benign(0.302) TCGA-SS-A7HO-01 5 33658405 33658405 G A ADAMTS12 Silent p.C358C 0.33 TCGA-SS-A7HO-01 5 6491473 6491473 G A UBE2QL1 3'UTR 0.43 TCGA-SS-A7HO-01 6 101847136 101847136 T A GRIK2 5'UTR 0.12 TCGA-SS-A7HO-01 6 116910131 116910131 G A RWDD1 Missense_Mutation p.A133T 0.38 tolerated(0.36) benign(0.04) TCGA-SS-A7HO-01 6 136990466 136990466 C A MAP3K5 Missense_Mutation p.A441S 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-SS-A7HO-01 6 30039313 30039313 C T RNF39 Missense_Mutation p.G280R 0.47 tolerated(0.62) benign(0.004) TCGA-SS-A7HO-01 6 30569776 30569776 C T PPP1R10 Missense_Mutation p.D884N 0.34 tolerated_low_confidence(0.11) unknown(0) TCGA-SS-A7HO-01 6 35208223 35208223 T C SCUBE3 Missense_Mutation p.L342P 0.51 tolerated(0.06) benign(0.372) TCGA-SS-A7HO-01 6 37614953 37614953 C T MDGA1 Missense_Mutation p.R681H 0.44 deleterious(0) probably_damaging(0.991) TCGA-SS-A7HO-01 6 39283951 39283951 G T KCNK16 Intron 0.38 TCGA-SS-A7HO-01 6 56484066 56484066 A G DST Intron 0.43 TCGA-SS-A7HO-01 6 72678702 72678702 A C RIMS1 Missense_Mutation p.M61L 0.53 tolerated(0.2) possibly_damaging(0.448) TCGA-SS-A7HO-01 6 72947613 72947613 C A RIMS1 Missense_Mutation p.H649N 0.17 deleterious(0) probably_damaging(0.99) TCGA-SS-A7HO-01 6 86257231 86257231 T C SNX14 Missense_Mutation p.D302G 0.45 deleterious(0.03) benign(0.155) TCGA-SS-A7HO-01 7 100348511 100348511 C A ZAN Missense_Mutation p.P505T 0.46 probably_damaging(0.999) TCGA-SS-A7HO-01 7 107638853 107638853 C A LAMB1 Missense_Mutation p.V100F 0.49 deleterious(0) probably_damaging(0.999) TCGA-SS-A7HO-01 7 123269329 123269329 C T ASB15 Silent p.N427N 0.37 TCGA-SS-A7HO-01 7 149474713 149474713 C T ZNF467 5'Flank 0.21 TCGA-SS-A7HO-01 7 30961752 30961752 C T AQP1 Silent p.C152C 0.34 TCGA-SS-A7HO-01 7 48083134 48083134 C T C7orf57 Silent p.L100L 0.51 TCGA-SS-A7HO-01 7 62752544 62752544 G A ZNF733P RNA 0.35 TCGA-SS-A7HO-01 7 94058647 94058647 A G COL1A2 Missense_Mutation p.K1287E 0.13 unknown(0) TCGA-SS-A7HO-01 8 124442274 124442274 G T WDYHV1 Splice_Site p.X78_splice 0.40 TCGA-SS-A7HO-01 8 124696880 124696880 C T ANXA13 Silent p.T308T 0.50 TCGA-SS-A7HO-01 8 128750945 128750945 C T MYC Missense_Mutation p.S161L 0.40 deleterious(0) possibly_damaging(0.888) TCGA-SS-A7HO-01 8 141381128 141381128 T A TRAPPC9 Missense_Mutation p.Y527F 0.38 deleterious(0) probably_damaging(0.979) TCGA-SS-A7HO-01 8 145533176 145533176 G A HSF1 Missense_Mutation p.G88S 0.52 tolerated(0.06) probably_damaging(0.924) TCGA-SS-A7HO-01 8 22460793 22460793 C T C8orf58 Nonsense_Mutation p.R358* 0.40 TCGA-SS-A7HO-01 8 27528862 27528862 C A SCARA3 Missense_Mutation p.F605L 0.33 tolerated_low_confidence(0.98) unknown(0) TCGA-SS-A7HO-01 8 68939478 68939478 C T PREX2 Missense_Mutation p.R155W 0.39 deleterious(0) probably_damaging(0.998) TCGA-SS-A7HO-01 9 117853215 117853215 A T TNC Missense_Mutation p.V28D 0.49 deleterious(0) possibly_damaging(0.526) TCGA-SS-A7HO-01 9 124329483 124329483 C A DAB2IP Missense_Mutation p.L6I 0.65 tolerated_low_confidence(0.09) benign(0) TCGA-SS-A7HO-01 9 125239492 125239492 C A OR1J1 Missense_Mutation p.L238F 0.46 tolerated_low_confidence(0.62) benign(0.192) TCGA-SS-A7HO-01 9 127951923 127951923 C G PPP6C Missense_Mutation p.K25N 0.21 deleterious(0) possibly_damaging(0.543) TCGA-SS-A7HO-01 9 130165960 130165960 C T SLC2A8 Missense_Mutation p.R249W 0.46 deleterious(0.02) benign(0.034) TCGA-SS-A7HO-01 9 131233667 131233667 C T ODF2 Silent p.H167H 0.43 TCGA-SS-A7HO-01 9 133884775 133884775 C T LAMC3 Silent p.P58P 0.39 TCGA-SS-A7HO-01 9 140772502 140772502 C T CACNA1B Silent p.P39P 0.09 TCGA-SS-A7HO-01 9 37733486 37733486 G T FRMPD1 Nonsense_Mutation p.E338* 0.22 TCGA-SS-A7HO-01 9 70917919 70917919 C T FOXD4L3 Missense_Mutation p.R18W 0.19 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-SS-A7HO-01 9 86399729 86399729 A G GKAP1 Missense_Mutation p.S155P 0.78 tolerated(0.07) benign(0.044) TCGA-SS-A7HO-01 X 130220336 130220336 C T ARHGAP36 Missense_Mutation p.R439C 0.73 deleterious(0.01) probably_damaging(0.993) TCGA-SS-A7HO-01 X 1748790 1748790 G A ASMT Missense_Mutation p.A174T 0.29 deleterious(0.01) possibly_damaging(0.726) TCGA-SS-A7HO-01 X 18259312 18259312 A C SCML2 3'UTR 0.33 TCGA-SS-A7HO-01 X 18748359 18748359 C T PPEF1 Missense_Mutation p.A36V 0.27 tolerated(0.49) benign(0.05) TCGA-SS-A7HO-01 X 2867501 2867501 G A ARSE Missense_Mutation p.S233L 0.26 tolerated(1) benign(0.002) TCGA-SS-A7HO-01 X 38664322 38664322 G T MID1IP1 Silent p.V41V 0.65 TCGA-SS-A7HO-01 X 39923064 39923065 - T BCOR Frame_Shift_Ins p.R1215Kfs*30 0.11 TCGA-SS-A7HO-01 X 48457983 48457983 G A WDR13 Missense_Mutation p.G134D 0.60 tolerated(0.52) benign(0.002) TCGA-SS-A7HO-01 X 48674640 48674640 G T HDAC6 Missense_Mutation p.R529L 0.60 deleterious(0) probably_damaging(1) TCGA-SS-A7HO-01 X 91132348 91132348 T C PCDH11X Missense_Mutation p.L370P 0.75 deleterious(0) probably_damaging(1) TCGA-T9-A92H-01 10 101715897 101715897 T C DNMBP Missense_Mutation p.D445G 0.44 tolerated_low_confidence(0.06) benign(0.003) TCGA-T9-A92H-01 10 105926392 105926392 C A WDR96 Nonsense_Mutation p.E965* 0.41 TCGA-T9-A92H-01 10 106937665 106937665 T G SORCS3 Intron 0.47 TCGA-T9-A92H-01 10 134691448 134691448 A C TTC40 Missense_Mutation p.N1383K 0.32 tolerated(1) benign(0) TCGA-T9-A92H-01 10 48416492 48416492 G A GDF2 Missense_Mutation p.R68C 0.36 deleterious(0) probably_damaging(0.984) TCGA-T9-A92H-01 10 48429418 48429418 G A GDF10 Silent p.N156N 0.20 TCGA-T9-A92H-01 10 88439192 88439192 C T LDB3 Silent p.G54G 0.51 TCGA-T9-A92H-01 11 121348900 121348900 G T SORL1 Missense_Mutation p.R159M 0.17 tolerated(0.08) benign(0.003) TCGA-T9-A92H-01 11 2167572 2167572 G A INS-IGF2 3'Flank 0.53 TCGA-T9-A92H-01 11 47312270 47312270 T C MADD Silent p.V1088V 0.32 TCGA-T9-A92H-01 11 4967563 4967563 G T OR51A4 Silent p.I256I 0.09 TCGA-T9-A92H-01 11 4967790 4967790 A T OR51A4 Missense_Mutation p.C181S 0.09 deleterious(0) probably_damaging(0.996) TCGA-T9-A92H-01 11 51411931 51411931 C T OR4A5 Silent p.A155A 0.41 TCGA-T9-A92H-01 11 57798932 57798932 C T OR6Q1 Silent p.L170L 0.42 TCGA-T9-A92H-01 11 60235951 60235951 T C MS4A1 3'UTR 0.46 TCGA-T9-A92H-01 11 63533328 63533328 C T C11orf95 RNA 0.09 TCGA-T9-A92H-01 11 82892926 82892926 C T PCF11 Silent p.L1400L 0.36 TCGA-T9-A92H-01 11 84028128 84028128 C T DLG2 Intron 0.23 TCGA-T9-A92H-01 11 92086552 92086552 G A FAT3 Missense_Mutation p.R425Q 0.53 benign(0.001) TCGA-T9-A92H-01 11 93171030 93171030 A G CCDC67 3'UTR 0.19 TCGA-T9-A92H-01 11 95568304 95568304 G C MTMR2 3'UTR 0.15 TCGA-T9-A92H-01 12 10223941 10223941 T A CLEC1A Missense_Mutation p.E278D 0.38 tolerated_low_confidence(0.22) benign(0.021) TCGA-T9-A92H-01 12 122734461 122734461 C A VPS33A Silent p.L244L 0.36 TCGA-T9-A92H-01 12 123351963 123351963 G A VPS37B Silent p.T186T 0.47 TCGA-T9-A92H-01 12 132281892 132281892 C A SFSWAP Missense_Mutation p.Q954K 0.14 tolerated_low_confidence(0.23) unknown(0) TCGA-T9-A92H-01 12 25055011 25055011 A C BCAT1 Intron 0.45 TCGA-T9-A92H-01 12 45568256 45568256 T A PLEKHA8P1 RNA 0.15 TCGA-T9-A92H-01 12 45568258 45568258 T A PLEKHA8P1 RNA 0.16 TCGA-T9-A92H-01 12 53070147 53070147 G A KRT1 Missense_Mutation p.R463C 0.40 deleterious(0.02) probably_damaging(0.973) TCGA-T9-A92H-01 12 53187899 53187899 T C KRT3 Missense_Mutation p.K288E 0.47 deleterious(0.03) probably_damaging(0.963) TCGA-T9-A92H-01 12 54913085 54913085 C T NCKAP1L Silent p.L532L 0.41 TCGA-T9-A92H-01 12 55038688 55038688 G C DCD Intron 0.40 TCGA-T9-A92H-01 12 55820159 55820159 T G OR6C76 Missense_Mutation p.L41R 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.824) TCGA-T9-A92H-01 12 57928154 57928154 G T DCTN2 Missense_Mutation p.L154M 0.45 deleterious(0) probably_damaging(1) TCGA-T9-A92H-01 12 60173640 60173640 G A SLC16A7 3'UTR 0.38 TCGA-T9-A92H-01 12 62786937 62786937 G A USP15 Missense_Mutation p.R842Q 0.42 deleterious(0) possibly_damaging(0.576) TCGA-T9-A92H-01 12 6939551 6939551 G A LEPREL2 Missense_Mutation p.R228H 0.36 tolerated(0.11) benign(0.007) TCGA-T9-A92H-01 13 101308686 101308686 C T TMTC4 Missense_Mutation p.A197T 0.40 tolerated(0.09) benign(0.017) TCGA-T9-A92H-01 13 101797209 101797209 C - NALCN Frame_Shift_Del p.K626Nfs*19 0.29 TCGA-T9-A92H-01 13 25672272 25672272 G A PABPC3 3'UTR 0.12 TCGA-T9-A92H-01 13 35692390 35692390 T A NBEA Missense_Mutation p.L703H 0.25 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 13 38266163 38266163 C T TRPC4 Missense_Mutation p.E403K 0.13 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 13 46549675 46549675 C T ZC3H13 Silent p.R737R 0.13 TCGA-T9-A92H-01 13 49283409 49283409 T A CYSLTR2 3'UTR 0.48 TCGA-T9-A92H-01 13 51855299 51855299 T A FAM124A Missense_Mutation p.D552E 0.25 tolerated_low_confidence(0.34) benign(0.004) TCGA-T9-A92H-01 13 79176645 79176645 C G POU4F1 Silent p.L55L 0.19 TCGA-T9-A92H-01 14 101500139 101500139 C T MIR495 RNA 0.67 TCGA-T9-A92H-01 14 42373410 42373410 A T LRFN5 3'UTR 0.60 TCGA-T9-A92H-01 14 65252569 65252569 C T SPTB Missense_Mutation p.R1221Q 0.38 tolerated(0.35) benign(0.001) TCGA-T9-A92H-01 14 71479819 71479819 G A PCNX Missense_Mutation p.A966T 0.67 tolerated(0.12) benign(0.15) TCGA-T9-A92H-01 14 96772122 96772122 T G ATG2B Missense_Mutation p.M1513L 0.36 tolerated(1) benign(0.001) TCGA-T9-A92H-01 14 99641072 99641072 G A BCL11B Missense_Mutation p.L701F 0.21 tolerated(0.37) benign(0.162) TCGA-T9-A92H-01 15 42731255 42731255 C T ZNF106 Missense_Mutation p.R1484H 0.32 tolerated(0.15) benign(0.006) TCGA-T9-A92H-01 15 51039824 51039824 G A SPPL2A Missense_Mutation p.T151I 0.64 tolerated(0.1) benign(0.046) TCGA-T9-A92H-01 15 59225812 59225812 G T SLTM 5'UTR 0.55 TCGA-T9-A92H-01 15 63419752 63419752 A T LACTB Missense_Mutation p.E272D 0.08 tolerated(0.17) benign(0.001) TCGA-T9-A92H-01 15 65899603 65899603 A T VWA9 Intron 0.79 TCGA-T9-A92H-01 15 89760442 89760442 C T RLBP1 Silent p.A85A 0.37 TCGA-T9-A92H-01 16 10273852 10273852 T C GRIN2A Intron 0.22 TCGA-T9-A92H-01 16 19278368 19278368 C T SYT17 Silent p.R465R 0.10 TCGA-T9-A92H-01 16 20362075 20362075 C T UMOD 5'UTR 0.51 TCGA-T9-A92H-01 16 27549217 27549217 T C GTF3C1 Missense_Mutation p.K214E 0.18 deleterious(0.01) probably_damaging(0.925) TCGA-T9-A92H-01 16 28948689 28948689 C T CD19 Silent p.L432L 0.18 TCGA-T9-A92H-01 16 31476629 31476629 G A ARMC5 Intron 0.34 TCGA-T9-A92H-01 16 31766734 31766734 C T ZNF720 Intron 0.12 TCGA-T9-A92H-01 16 3614889 3614889 G A NLRC3 Missense_Mutation p.P97L 0.79 tolerated(0.06) benign(0.002) TCGA-T9-A92H-01 16 55616833 55616833 T C LPCAT2 Silent p.F486F 0.14 TCGA-T9-A92H-01 16 71718498 71718498 C A PHLPP2 Nonsense_Mutation p.E206* 0.16 TCGA-T9-A92H-01 16 74443526 74443526 C T CLEC18B Missense_Mutation p.V418M 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-T9-A92H-01 17 21094636 21094636 C T DHRS7B 3'UTR 0.81 TCGA-T9-A92H-01 17 27086837 27086837 G A FAM222B Missense_Mutation p.A47V 0.37 deleterious(0) probably_damaging(0.972) TCGA-T9-A92H-01 17 3030076 3030076 C G OR1G1 Missense_Mutation p.C257S 0.26 deleterious(0.03) benign(0.067) TCGA-T9-A92H-01 17 33772436 33772436 C A SLFN13 Missense_Mutation p.Q88H 0.47 tolerated(0.48) benign(0.023) TCGA-T9-A92H-01 17 34183199 34183199 C T C17orf66 Missense_Mutation p.R419H 0.46 deleterious(0) probably_damaging(0.993) TCGA-T9-A92H-01 17 47041813 47041813 T C GIP Missense_Mutation p.H39R 0.20 tolerated(0.11) benign(0.003) TCGA-T9-A92H-01 17 48356336 48356336 G A TMEM92 Silent p.A115A 0.27 TCGA-T9-A92H-01 17 53345418 53345418 C T HLF Missense_Mutation p.P141L 0.28 tolerated(0.14) benign(0.014) TCGA-T9-A92H-01 17 54990788 54990788 G A TRIM25 Missense_Mutation p.P188S 0.40 tolerated(0.25) benign(0.126) TCGA-T9-A92H-01 17 59489439 59489439 T C C17orf82 Missense_Mutation p.S35P 0.05 tolerated_low_confidence(0.18) possibly_damaging(0.504) TCGA-T9-A92H-01 17 708351 708351 G A NXN Silent p.N319N 0.38 TCGA-T9-A92H-01 17 74324843 74324844 - CCCC PRPSAP1 Frame_Shift_Ins p.P246Gfs*42 0.38 TCGA-T9-A92H-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.82 deleterious(0) probably_damaging(1) TCGA-T9-A92H-01 17 76162107 76162107 C T C17orf99 Missense_Mutation p.R260C 0.31 deleterious_low_confidence(0.04) benign(0) TCGA-T9-A92H-01 18 13885116 13885116 G A MC2R Silent p.H134H 0.72 TCGA-T9-A92H-01 18 23901021 23901037 TCTGCTTCTGCAGGTAA - TAF4B Splice_Site p.X668_splice 0.28 TCGA-T9-A92H-01 18 50278689 50278689 A T DCC Silent p.A119A 0.37 TCGA-T9-A92H-01 18 51013194 51013194 C T DCC Missense_Mutation p.T1255M 0.61 deleterious(0.01) probably_damaging(0.909) TCGA-T9-A92H-01 18 51013228 51013228 G A DCC Silent p.P1266P 0.62 TCGA-T9-A92H-01 19 17184146 17184146 C A HAUS8 Splice_Site p.X10_splice 0.40 TCGA-T9-A92H-01 19 17648263 17648263 G A FAM129C Missense_Mutation p.R200H 0.42 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 19 20807768 20807768 T C ZNF626 Missense_Mutation p.I305M 0.38 tolerated(0.23) possibly_damaging(0.766) TCGA-T9-A92H-01 19 21608444 21608444 C A ZNF493 3'UTR 0.37 TCGA-T9-A92H-01 19 31768237 31768237 G A TSHZ3 Missense_Mutation p.T821M 0.16 tolerated(0.1) benign(0.089) TCGA-T9-A92H-01 19 33651387 33651387 G T WDR88 Silent p.R355R 0.40 TCGA-T9-A92H-01 19 36109572 36109572 G A HAUS5 Silent p.V329V 0.12 TCGA-T9-A92H-01 19 38384379 38384379 G T WDR87 Missense_Mutation p.A616E 0.39 probably_damaging(0.987) TCGA-T9-A92H-01 19 4338852 4338852 C A STAP2 5'Flank 0.43 TCGA-T9-A92H-01 19 43441183 43441183 T C PSG7 Missense_Mutation p.K16E 0.39 deleterious(0) possibly_damaging(0.712) TCGA-T9-A92H-01 19 4357414 4357414 C G MPND Silent p.L387L 0.36 TCGA-T9-A92H-01 19 44117356 44117356 G A SRRM5 Silent p.K361K 0.40 TCGA-T9-A92H-01 19 52196414 52196414 T A SPACA6P-AS RNA 0.47 TCGA-T9-A92H-01 19 52716228 52716228 G T PPP2R1A Silent p.A224A 0.34 TCGA-T9-A92H-01 19 53741368 53741368 T A ZNF677 Missense_Mutation p.R204S 0.35 tolerated(0.41) benign(0.014) TCGA-T9-A92H-01 19 54876665 54876665 G A LAIR1 5'Flank 0.33 TCGA-T9-A92H-01 19 55669006 55669006 G A TNNI3 5'UTR 0.30 TCGA-T9-A92H-01 19 55877410 55877410 C T IL11 Missense_Mutation p.V189M 0.40 deleterious(0.04) probably_damaging(0.998) TCGA-T9-A92H-01 19 56156922 56156922 C T ZNF581 3'UTR 0.41 TCGA-T9-A92H-01 19 56565165 56565165 C T NLRP5 Missense_Mutation p.A1097V 0.15 deleterious(0.04) benign(0.001) TCGA-T9-A92H-01 19 56569756 56569756 G A NLRP5 Silent p.T1150T 0.42 TCGA-T9-A92H-01 19 57061499 57061499 A C ZFP28 Missense_Mutation p.N251H 0.18 tolerated(0.13) benign(0.005) TCGA-T9-A92H-01 1 103491778 103491778 C A COL11A1 Missense_Mutation p.Q297H 0.48 probably_damaging(0.945) TCGA-T9-A92H-01 1 12921727 12921727 C G PRAMEF2 3'UTR 0.09 TCGA-T9-A92H-01 1 13942574 13942574 C T PDPN 3'UTR 0.61 TCGA-T9-A92H-01 1 152192303 152192303 C A HRNR Missense_Mutation p.G601V 0.49 unknown(0) TCGA-T9-A92H-01 1 152327585 152327585 G T FLG2 Missense_Mutation p.Q893K 0.30 unknown(0) TCGA-T9-A92H-01 1 152484624 152484624 C A LCE5A 3'UTR 0.28 TCGA-T9-A92H-01 1 153279625 153279625 C A PGLYRP3 Missense_Mutation p.Q58H 0.24 tolerated(0.79) benign(0.006) TCGA-T9-A92H-01 1 153591302 153591302 T A S100A13 3'UTR 0.52 TCGA-T9-A92H-01 1 160342125 160342126 - T NHLH1 3'UTR 0.17 TCGA-T9-A92H-01 1 161130678 161130678 G A USP21 Missense_Mutation p.R83Q 0.18 tolerated_low_confidence(0.14) benign(0.01) TCGA-T9-A92H-01 1 193202285 193202285 G A CDC73 Splice_Site p.X439_splice 0.45 TCGA-T9-A92H-01 1 205767909 205767909 G A SLC41A1 Silent p.R244R 0.22 TCGA-T9-A92H-01 1 228403488 228403488 G A OBSCN Missense_Mutation p.V685M 0.24 possibly_damaging(0.626) TCGA-T9-A92H-01 1 230845757 230845757 G C AGT Silent p.T280T 0.59 TCGA-T9-A92H-01 1 233490632 233490632 G T MLK4 Nonsense_Mutation p.E396* 0.54 TCGA-T9-A92H-01 1 240635531 240635531 A T FMN2 Intron 0.60 TCGA-T9-A92H-01 1 24463685 24463685 G A IL22RA1 Silent p.T97T 0.32 TCGA-T9-A92H-01 1 245849385 245849385 G A KIF26B Missense_Mutation p.A1034T 0.16 tolerated(0.18) unknown(0) TCGA-T9-A92H-01 1 246784769 246784769 A G CNST Missense_Mutation p.K140E 0.23 tolerated(0.18) benign(0.228) TCGA-T9-A92H-01 1 247921611 247921611 C A OR1C1 Missense_Mutation p.C33F 0.26 tolerated(0.72) benign(0.001) TCGA-T9-A92H-01 1 248845076 248845076 C T OR14I1 Missense_Mutation p.R177H 0.58 deleterious(0) benign(0.018) TCGA-T9-A92H-01 1 36559156 36559156 G A ADPRHL2 3'UTR 0.29 TCGA-T9-A92H-01 1 45793223 45793223 C T HPDL Missense_Mutation p.R135C 0.43 deleterious(0.05) benign(0.063) TCGA-T9-A92H-01 1 46497255 46497255 C A MAST2 Nonsense_Mutation p.S1062* 0.56 TCGA-T9-A92H-01 1 52962854 52962854 T A ZCCHC11 Missense_Mutation p.E334V 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-T9-A92H-01 1 77763595 77763595 C T AK5 Missense_Mutation p.P221L 0.26 deleterious(0) probably_damaging(1) TCGA-T9-A92H-01 1 82416026 82416026 C A LPHN2 Missense_Mutation p.S451Y 0.31 deleterious(0.02) possibly_damaging(0.5) TCGA-T9-A92H-01 1 85135469 85135469 A T SSX2IP Silent p.L107L 0.54 TCGA-T9-A92H-01 20 13098334 13098334 A C SPTLC3 Missense_Mutation p.S372R 0.40 deleterious(0.02) probably_damaging(1) TCGA-T9-A92H-01 20 1356217 1356217 G T FKBP1A Missense_Mutation p.S39Y 0.38 deleterious(0) probably_damaging(0.997) TCGA-T9-A92H-01 20 23066103 23066103 T G CD93 Missense_Mutation p.K243Q 0.32 tolerated(0.09) benign(0.346) TCGA-T9-A92H-01 20 23361859 23361859 C T NAPB Silent p.L219L 0.13 TCGA-T9-A92H-01 20 23361867 23361867 C G NAPB Missense_Mutation p.D217H 0.12 deleterious(0) possibly_damaging(0.81) TCGA-T9-A92H-01 20 25261734 25261734 C T PYGB Silent p.I463I 0.32 TCGA-T9-A92H-01 20 34116326 34116326 C T C20orf173 Missense_Mutation p.R179Q 0.59 tolerated(0.51) benign(0) TCGA-T9-A92H-01 20 37203520 37203520 C A RALGAPB Missense_Mutation p.D1465E 0.27 tolerated(1) benign(0.027) TCGA-T9-A92H-01 20 4854727 4854727 G A SLC23A2 Silent p.A319A 0.42 TCGA-T9-A92H-01 20 57875717 57875717 C T EDN3 5'UTR 0.39 TCGA-T9-A92H-01 20 61936783 61936783 G A COL20A1 Missense_Mutation p.E70K 0.32 deleterious(0) probably_damaging(0.955) TCGA-T9-A92H-01 20 62046456 62046456 C T KCNQ2 Missense_Mutation p.R442H 0.32 deleterious(0) possibly_damaging(0.781) TCGA-T9-A92H-01 20 62192018 62192018 C T HELZ2 Silent p.A2438A 0.57 TCGA-T9-A92H-01 20 62326796 62326796 C T RTEL1 Silent p.S1229S 0.28 TCGA-T9-A92H-01 20 62493779 62493779 C T ABHD16B Missense_Mutation p.R296C 0.59 deleterious(0) probably_damaging(0.993) TCGA-T9-A92H-01 20 853752 853752 C T ANGPT4 Missense_Mutation p.D455N 0.41 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 21 10998223 10998223 C T TPTE RNA 0.15 TCGA-T9-A92H-01 21 37586745 37586745 G A DOPEY2 Silent p.L340L 0.14 TCGA-T9-A92H-01 21 41496225 41496225 G A DSCAM Missense_Mutation p.A1198V 0.39 tolerated(1) benign(0.042) TCGA-T9-A92H-01 22 19459312 19459312 A T UFD1L Nonsense_Mutation p.Y63* 0.31 TCGA-T9-A92H-01 22 19708353 19708353 C A SEPT5 Missense_Mutation p.D226E 0.35 tolerated(0.11) possibly_damaging(0.583) TCGA-T9-A92H-01 22 30766879 30766879 G A CCDC157 Missense_Mutation p.A329T 0.42 tolerated(0.29) benign(0.001) TCGA-T9-A92H-01 22 39218805 39218805 C A NPTXR Missense_Mutation p.A438S 0.17 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 22 39884197 39884197 G T MGAT3 Missense_Mutation p.R282L 0.52 deleterious(0.05) benign(0.231) TCGA-T9-A92H-01 22 46932071 46932071 G A CELSR1 Missense_Mutation p.R333C 0.33 deleterious(0) probably_damaging(1) TCGA-T9-A92H-01 2 113956336 113956336 T C PSD4 Missense_Mutation p.S882P 0.52 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 2 167279815 167279815 G T SCN7A Missense_Mutation p.A994D 0.21 tolerated(0.18) probably_damaging(0.971) TCGA-T9-A92H-01 2 16740786 16740786 A T FAM49A Missense_Mutation p.I260N 0.26 deleterious(0) probably_damaging(0.936) TCGA-T9-A92H-01 2 16740788 16740788 G A FAM49A Silent p.V259V 0.23 TCGA-T9-A92H-01 2 167760236 167760236 G A XIRP2 Missense_Mutation p.D82N 0.38 benign(0.371) TCGA-T9-A92H-01 2 168725620 168725620 G C B3GALT1 Missense_Mutation p.S24T 0.06 tolerated_low_confidence(0.21) possibly_damaging(0.584) TCGA-T9-A92H-01 2 169869891 169869891 C A ABCB11 Missense_Mutation p.D94Y 0.38 deleterious(0) probably_damaging(0.989) TCGA-T9-A92H-01 2 182347341 182347341 A G ITGA4 Missense_Mutation p.E335G 0.39 deleterious(0) probably_damaging(1) TCGA-T9-A92H-01 2 231988321 231988321 T A HTR2B Missense_Mutation p.K53I 0.24 deleterious(0.04) benign(0.1) TCGA-T9-A92H-01 2 23914742 23914742 T A KLHL29 Missense_Mutation p.F426L 0.41 deleterious(0) probably_damaging(0.961) TCGA-T9-A92H-01 2 23914743 23914743 C A KLHL29 Missense_Mutation p.L427I 0.41 deleterious(0) probably_damaging(0.992) TCGA-T9-A92H-01 2 242577058 242577058 C T ATG4B 5'UTR 0.23 TCGA-T9-A92H-01 2 48061818 48061818 C T FBXO11 Silent p.G278G 0.35 TCGA-T9-A92H-01 2 54149707 54149707 T G PSME4 Missense_Mutation p.N665H 0.41 tolerated(0.16) benign(0.001) TCGA-T9-A92H-01 2 55200297 55200297 C A RTN4 Nonsense_Mutation p.E1192* 0.41 TCGA-T9-A92H-01 2 62449460 62449460 A C B3GNT2 Missense_Mutation p.K35N 0.28 tolerated(0.15) benign(0.382) TCGA-T9-A92H-01 2 85766330 85766330 G A MAT2A 5'UTR 0.31 TCGA-T9-A92H-01 2 98274971 98274971 G A ACTR1B Silent p.R192R 0.33 TCGA-T9-A92H-01 3 141259419 141259419 G C RASA2 Missense_Mutation p.E165D 0.26 tolerated(1) benign(0) TCGA-T9-A92H-01 3 142561853 142561853 G A PCOLCE2 Silent p.S162S 0.45 TCGA-T9-A92H-01 3 157271101 157271101 T A C3orf55 Missense_Mutation p.S19T 0.06 tolerated_low_confidence(0.09) probably_damaging(0.953) TCGA-T9-A92H-01 3 172643259 172643259 G T SPATA16 Missense_Mutation p.P369T 0.04 deleterious(0) possibly_damaging(0.803) TCGA-T9-A92H-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.50 deleterious(0.02) probably_damaging(0.959) TCGA-T9-A92H-01 3 186268979 186268979 A C TBCCD1 Missense_Mutation p.L545R 0.05 deleterious(0) probably_damaging(1) TCGA-T9-A92H-01 3 196281254 196281254 G T WDR53 Missense_Mutation p.T302N 0.49 tolerated(0.49) benign(0.021) TCGA-T9-A92H-01 3 33633976 33633976 G T CLASP2 Missense_Mutation p.A661E 0.27 tolerated(0.07) benign(0.066) TCGA-T9-A92H-01 3 36897439 36897439 G A TRANK1 Silent p.P1214P 0.54 TCGA-T9-A92H-01 3 38622739 38622739 G A SCN5A Missense_Mutation p.R971C 0.25 tolerated(0.13) benign(0.001) TCGA-T9-A92H-01 3 3887300 3887300 C G LRRN1 Silent p.L325L 0.21 TCGA-T9-A92H-01 3 41266100 41266100 T G CTNNB1 Missense_Mutation p.S33A 0.18 deleterious(0) possibly_damaging(0.847) TCGA-T9-A92H-01 4 100532398 100532398 G A MTTP Splice_Site p.X623_splice 0.48 TCGA-T9-A92H-01 4 106307761 106307761 C T PPA2 Missense_Mutation p.R301H 0.19 tolerated(0.58) benign(0.001) TCGA-T9-A92H-01 4 126412065 126412065 C A FAT4 Missense_Mutation p.N4696K 0.16 benign(0.185) TCGA-T9-A92H-01 4 134073879 134073879 G A PCDH10 Missense_Mutation p.D862N 0.54 tolerated(0.45) probably_damaging(0.93) TCGA-T9-A92H-01 4 164050208 164050208 T G NAF1 Silent p.P442P 0.40 TCGA-T9-A92H-01 4 177649010 177649010 G A VEGFC Silent p.S158S 0.18 TCGA-T9-A92H-01 4 25382050 25382050 G A ANAPC4 Missense_Mutation p.E62K 0.32 tolerated(0.2) possibly_damaging(0.713) TCGA-T9-A92H-01 4 57898345 57898345 T C IGFBP7 Intron 0.46 TCGA-T9-A92H-01 4 5837716 5837716 C T CRMP1 Missense_Mutation p.V517M 0.20 deleterious(0.02) benign(0.144) TCGA-T9-A92H-01 4 5961218 5961218 G T C4orf50 Missense_Mutation p.P713T 0.23 tolerated(0.34) benign(0.055) TCGA-T9-A92H-01 4 6599981 6599981 C T MAN2B2 Silent p.Y435Y 0.19 TCGA-T9-A92H-01 4 71472561 71472561 G A AMBN 3'UTR 0.45 TCGA-T9-A92H-01 4 87638268 87638268 G A PTPN13 Silent p.P461P 0.24 TCGA-T9-A92H-01 5 1077989 1077989 G T SLC12A7 Missense_Mutation p.L530M 0.35 deleterious(0.01) possibly_damaging(0.619) TCGA-T9-A92H-01 5 109976614 109976614 T C TMEM232 Silent p.Q107Q 0.02 TCGA-T9-A92H-01 5 128324428 128324428 G T SLC27A6 Missense_Mutation p.G274V 0.37 deleterious(0.02) probably_damaging(1) TCGA-T9-A92H-01 5 140174742 140174742 C T PCDHA2 Missense_Mutation p.R65W 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-T9-A92H-01 5 140232589 140232589 G A PCDHA9 Intron 0.36 TCGA-T9-A92H-01 5 176824936 176824936 C A SLC34A1 Missense_Mutation p.F523L 0.36 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 5 176825033 176825033 G C SLC34A1 Missense_Mutation p.V556L 0.39 tolerated(0.39) benign(0.002) TCGA-T9-A92H-01 5 180043378 180043378 G T FLT4 Missense_Mutation p.R1070S 0.43 deleterious(0) probably_damaging(1) TCGA-T9-A92H-01 5 1882041 1882041 C T IRX4 Missense_Mutation p.A60T 0.38 tolerated(0.14) benign(0.1) TCGA-T9-A92H-01 5 33448793 33448793 G A TARS Silent p.A95A 0.35 TCGA-T9-A92H-01 5 33937066 33937066 C T RXFP3 Missense_Mutation p.A74V 0.35 tolerated(0.18) benign(0.087) TCGA-T9-A92H-01 5 79033373 79033373 G A CMYA5 Missense_Mutation p.V2929M 0.45 benign(0.018) TCGA-T9-A92H-01 6 106987281 106987281 G A AIM1 Nonsense_Mutation p.W1166* 0.20 TCGA-T9-A92H-01 6 116783478 116783478 C T FAM26F Missense_Mutation p.T129I 0.58 deleterious(0) benign(0.048) TCGA-T9-A92H-01 6 135263594 135263594 T A ALDH8A1 Missense_Mutation p.D132V 0.51 tolerated(0.18) possibly_damaging(0.493) TCGA-T9-A92H-01 6 143095891 143095892 - TT HIVEP2 5'UTR 0.27 TCGA-T9-A92H-01 6 15523440 15523440 G A DTNBP1 Silent p.S274S 0.39 TCGA-T9-A92H-01 6 160952620 160952620 C G LPA 3'UTR 0.46 TCGA-T9-A92H-01 6 28219876 28219876 C A ZKSCAN4 5'UTR 0.13 TCGA-T9-A92H-01 6 30554452 30554452 T A ABCF1 Missense_Mutation p.S665R 0.46 deleterious(0) probably_damaging(0.998) TCGA-T9-A92H-01 6 31129647 31129647 G T TCF19 Missense_Mutation p.R221L 0.13 deleterious(0) possibly_damaging(0.726) TCGA-T9-A92H-01 6 31129648 31129648 C T TCF19 Silent p.R221R 0.13 TCGA-T9-A92H-01 6 43251827 43251827 C T TTBK1 Nonsense_Mutation p.Q1117* 0.39 TCGA-T9-A92H-01 6 43325447 43325447 A T ZNF318 Missense_Mutation p.L202H 0.42 probably_damaging(0.99) TCGA-T9-A92H-01 6 43325454 43325454 G A ZNF318 Missense_Mutation p.R200W 0.45 probably_damaging(0.954) TCGA-T9-A92H-01 6 70646773 70646773 A T COL19A1 Nonsense_Mutation p.K282* 0.13 TCGA-T9-A92H-01 6 70646774 70646774 A T COL19A1 Missense_Mutation p.K282I 0.13 tolerated(0.13) unknown(0) TCGA-T9-A92H-01 6 90331668 90331668 C T ANKRD6 Silent p.L274L 0.32 TCGA-T9-A92H-01 7 102098188 102098188 G A ALKBH4 Missense_Mutation p.P188S 0.35 tolerated(0.37) benign(0.006) TCGA-T9-A92H-01 7 102574810 102574810 T G LRRC17 Missense_Mutation p.I150M 0.38 deleterious(0.01) possibly_damaging(0.855) TCGA-T9-A92H-01 7 127255685 127255685 C T PAX4 5'UTR 0.33 TCGA-T9-A92H-01 7 138356765 138356765 G A SVOPL Missense_Mutation p.T91M 0.35 deleterious(0.04) possibly_damaging(0.85) TCGA-T9-A92H-01 7 143806974 143806975 - T OR2A2 Frame_Shift_Ins p.L102Ffs*19 0.26 TCGA-T9-A92H-01 7 146829418 146829418 C T CNTNAP2 Missense_Mutation p.R389W 0.04 tolerated(0.13) possibly_damaging(0.786) TCGA-T9-A92H-01 7 150500529 150500529 G T TMEM176A Silent p.R109R 0.37 TCGA-T9-A92H-01 7 23775462 23775462 G T STK31 Missense_Mutation p.M263I 0.35 tolerated(0.22) benign(0.001) TCGA-T9-A92H-01 7 38791874 38791874 G A VPS41 Nonsense_Mutation p.Q610* 0.41 TCGA-T9-A92H-01 7 94214747 94214747 G T SGCE 3'UTR 0.39 TCGA-T9-A92H-01 8 119209963 119209963 C G SAMD12 Missense_Mutation p.E145Q 0.41 deleterious_low_confidence(0.02) benign(0.273) TCGA-T9-A92H-01 8 13072094 13072094 G A DLC1 Intron 0.31 TCGA-T9-A92H-01 8 144464048 144464048 G A RHPN1 Silent p.A569A 0.36 TCGA-T9-A92H-01 8 145620140 145620140 C T CPSF1 Missense_Mutation p.G1124E 0.44 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 8 30701489 30701489 A G TEX15 Missense_Mutation p.L1682S 0.35 deleterious(0.01) probably_damaging(0.909) TCGA-T9-A92H-01 8 30704104 30704104 T C TEX15 Missense_Mutation p.I810M 0.37 tolerated(0.17) benign(0.048) TCGA-T9-A92H-01 8 48874200 48874201 GG C MCM4 Frame_Shift_Del p.Q65Hfs*26 0.31 TCGA-T9-A92H-01 8 72981379 72981379 T C TRPA1 Missense_Mutation p.K108R 0.35 tolerated(0.19) possibly_damaging(0.513) TCGA-T9-A92H-01 9 133914593 133914593 G A LAMC3 Missense_Mutation p.R414H 0.31 deleterious(0.02) benign(0.12) TCGA-T9-A92H-01 9 140347015 140347015 C T NSMF Silent p.E385E 0.47 TCGA-T9-A92H-01 9 35682742 35682742 G A TPM2 Intron 0.52 TCGA-T9-A92H-01 9 372211 372211 T C DOCK8 Silent p.R678R 0.41 TCGA-T9-A92H-01 9 38397140 38397140 C T ALDH1B1 Silent p.A465A 0.44 TCGA-T9-A92H-01 9 90263742 90263742 A C DAPK1 Missense_Mutation p.D459A 0.22 deleterious(0.01) benign(0.328) TCGA-T9-A92H-01 9 91996175 91996175 G T SEMA4D Missense_Mutation p.D511E 0.27 deleterious(0.03) possibly_damaging(0.827) TCGA-T9-A92H-01 X 114427399 114427401 TTC CAAA RBMXL3 3'UTR 0.46 TCGA-T9-A92H-01 X 125686344 125686344 A T DCAF12L1 Missense_Mutation p.L83Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-T9-A92H-01 X 135428691 135428691 T G GPR112 Silent p.T942T 0.26 TCGA-T9-A92H-01 X 144903904 144903904 T C SLITRK2 5'UTR 0.32 TCGA-T9-A92H-01 X 27766401 27766401 T C DCAF8L2 Silent p.F463F 0.04 TCGA-T9-A92H-01 X 30269452 30269452 C G MAGEB1 Missense_Mutation p.T281S 0.24 tolerated(1) benign(0.006) TCGA-T9-A92H-01 X 32381009 32381009 A C DMD Missense_Mutation p.L1741V 0.25 possibly_damaging(0.567) TCGA-T9-A92H-01 X 48923135 48923135 G A CCDC120 Missense_Mutation p.R278Q 0.92 deleterious(0) probably_damaging(0.997) TCGA-T9-A92H-01 X 90692237 90692237 C G PABPC5 3'UTR 0.29 TCGA-WS-AB45-01 10 100148212 100148212 G - PYROXD2 Frame_Shift_Del p.P449Lfs*5 0.16 TCGA-WS-AB45-01 10 101657896 101657896 G A DNMBP Missense_Mutation p.A956V 0.15 deleterious(0.02) benign(0.113) TCGA-WS-AB45-01 10 102685900 102685900 C T FAM178A Intron 0.10 TCGA-WS-AB45-01 10 102766527 102766527 C T LZTS2 Missense_Mutation p.R538W 0.17 deleterious(0) probably_damaging(0.913) TCGA-WS-AB45-01 10 103987414 103987414 C A ELOVL3 Missense_Mutation p.L45M 0.08 tolerated(0.27) probably_damaging(1) TCGA-WS-AB45-01 10 104140384 104140384 G A GBF1 Missense_Mutation p.R1704H 0.10 deleterious(0) probably_damaging(0.991) TCGA-WS-AB45-01 10 104389990 104389990 G A SUFU 3'UTR 0.13 TCGA-WS-AB45-01 10 104416597 104416597 C T TRIM8 Missense_Mutation p.T381M 0.18 tolerated_low_confidence(0.37) benign(0.009) TCGA-WS-AB45-01 10 105145246 105145246 C T TAF5 Missense_Mutation p.R610W 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 10 105147937 105147937 G A TAF5 Missense_Mutation p.R787Q 0.17 deleterious(0) possibly_damaging(0.701) TCGA-WS-AB45-01 10 105361957 105361957 A G SH3PXD2A Silent p.T978T 0.11 TCGA-WS-AB45-01 10 105903209 105903209 C T WDR96 Missense_Mutation p.R1378Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 10 106960932 106960932 G A SORCS3 Missense_Mutation p.A728T 0.07 tolerated(0.11) benign(0.011) TCGA-WS-AB45-01 10 108388985 108388985 G A SORCS1 Silent p.S879S 0.16 TCGA-WS-AB45-01 10 1089252 1089259 ATCTTAGC - IDI1 Frame_Shift_Del p.A130Yfs*12 0.12 TCGA-WS-AB45-01 10 112839017 112839017 G A ADRA2A Silent p.T421T 0.19 TCGA-WS-AB45-01 10 114057852 114057852 G A TECTB Missense_Mutation p.V233M 0.20 tolerated(0.07) probably_damaging(0.957) TCGA-WS-AB45-01 10 114170341 114170341 G A ACSL5 Splice_Site p.X305_splice 0.10 TCGA-WS-AB45-01 10 114428745 114428745 G T VTI1A Missense_Mutation p.G183V 0.08 deleterious(0.01) probably_damaging(0.961) TCGA-WS-AB45-01 10 115391717 115391717 A G NRAP Missense_Mutation p.Y547H 0.06 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 10 116046072 116046072 G A VWA2 Missense_Mutation p.E458K 0.10 deleterious(0.05) benign(0.066) TCGA-WS-AB45-01 10 116213185 116213185 G - ABLIM1 Frame_Shift_Del p.P500Lfs*2 0.15 TCGA-WS-AB45-01 10 116335268 116335268 C T ABLIM1 Missense_Mutation p.R157H 0.17 deleterious(0) possibly_damaging(0.87) TCGA-WS-AB45-01 10 118969176 118969176 G A KCNK18 Missense_Mutation p.R174H 0.15 tolerated(0.19) benign(0) TCGA-WS-AB45-01 10 120095077 120095077 C T FAM204A Missense_Mutation p.R104H 0.15 tolerated(0.07) benign(0.02) TCGA-WS-AB45-01 10 120354082 120354082 G A PRLHR Silent p.Y225Y 0.18 TCGA-WS-AB45-01 10 121685697 121685698 TG - SEC23IP Frame_Shift_Del p.V760Efs*3 0.14 TCGA-WS-AB45-01 10 122280506 122280506 G A PPAPDC1A Missense_Mutation p.R115H 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 10 123596255 123596255 G A ATE1 Missense_Mutation p.S412L 0.09 deleterious(0) probably_damaging(0.982) TCGA-WS-AB45-01 10 123842618 123842618 G A TACC2 Silent p.S201S 0.20 TCGA-WS-AB45-01 10 124907717 124907717 C A HMX2 5'UTR 0.17 TCGA-WS-AB45-01 10 124909289 124909289 C T HMX2 Missense_Mutation p.R158C 0.14 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 10 125801922 125801922 C T CHST15 Missense_Mutation p.V310M 0.08 tolerated(0.05) possibly_damaging(0.589) TCGA-WS-AB45-01 10 126715350 126715350 C T CTBP2 Missense_Mutation p.A327T 0.13 tolerated_low_confidence(0.46) benign(0.001) TCGA-WS-AB45-01 10 127434314 127434314 A G EDRF1 Missense_Mutation p.K877E 0.07 tolerated(0.06) benign(0.035) TCGA-WS-AB45-01 10 129866509 129866509 G A PTPRE Silent p.T322T 0.13 TCGA-WS-AB45-01 10 129907575 129907575 T C MKI67 Silent p.K843K 0.12 TCGA-WS-AB45-01 10 1313222 1313222 G A ADARB2 Missense_Mutation p.R374C 0.15 tolerated(0.09) possibly_damaging(0.634) TCGA-WS-AB45-01 10 134017291 134017291 G A DPYSL4 Missense_Mutation p.R496H 0.22 deleterious(0) possibly_damaging(0.813) TCGA-WS-AB45-01 10 134022600 134022600 A G STK32C Silent p.N419N 0.22 TCGA-WS-AB45-01 10 134751092 134751092 G A TTC40 Silent p.H208H 0.10 TCGA-WS-AB45-01 10 134942484 134942484 C T GPR123 Silent p.C384C 0.14 TCGA-WS-AB45-01 10 135002106 135002106 G A KNDC1 Missense_Mutation p.A464T 0.07 deleterious(0) benign(0.365) TCGA-WS-AB45-01 10 135015083 135015083 A G KNDC1 Missense_Mutation p.D1023G 0.10 deleterious(0.05) benign(0.434) TCGA-WS-AB45-01 10 135107160 135107160 G A TUBGCP2 Missense_Mutation p.R272W 0.13 deleterious(0) probably_damaging(0.988) TCGA-WS-AB45-01 10 14816259 14816259 G A FAM107B Missense_Mutation p.T135M 0.18 tolerated_low_confidence(1) benign(0.002) TCGA-WS-AB45-01 10 14896274 14896274 G A HSPA14 Silent p.V295V 0.08 TCGA-WS-AB45-01 10 15120525 15120525 T C ACBD7 3'UTR 0.17 TCGA-WS-AB45-01 10 16982110 16982110 G T CUBN Silent p.I1823I 0.16 TCGA-WS-AB45-01 10 17865240 17865240 G T MRC1L1 Missense_Mutation p.V77L 0.28 possibly_damaging(0.768) TCGA-WS-AB45-01 10 18689996 18689996 C A CACNB2 Intron 0.15 TCGA-WS-AB45-01 10 21804448 21804448 A G SKIDA1 Silent p.D768D 0.07 TCGA-WS-AB45-01 10 22048396 22048396 C T DNAJC1 Silent p.Q433Q 0.15 TCGA-WS-AB45-01 10 22896876 22896876 T C PIP4K2A Missense_Mutation p.I107V 0.14 tolerated(0.24) benign(0.05) TCGA-WS-AB45-01 10 24762687 24762687 G A KIAA1217 Silent p.P459P 0.09 TCGA-WS-AB45-01 10 24790468 24790468 G A KIAA1217 Silent p.Q665Q 0.14 TCGA-WS-AB45-01 10 24831649 24831649 C T KIAA1217 Missense_Mutation p.R1188W 0.07 tolerated(0.12) probably_damaging(0.949) TCGA-WS-AB45-01 10 25464906 25464906 C T GPR158 Missense_Mutation p.P186L 0.11 tolerated(0.08) benign(0.012) TCGA-WS-AB45-01 10 25684939 25684939 C T GPR158 Missense_Mutation p.R370W 0.08 deleterious(0.01) benign(0.093) TCGA-WS-AB45-01 10 26463056 26463056 C T MYO3A Missense_Mutation p.T1288I 0.18 tolerated_low_confidence(0.13) benign(0.001) TCGA-WS-AB45-01 10 27048075 27048075 C A ABI1 Nonsense_Mutation p.G332* 0.07 TCGA-WS-AB45-01 10 27447523 27447523 G A MASTL Missense_Mutation p.V78I 0.16 deleterious(0.03) possibly_damaging(0.644) TCGA-WS-AB45-01 10 30316398 30316398 C T KIAA1462 Silent p.Q893Q 0.14 TCGA-WS-AB45-01 10 30318753 30318753 C T KIAA1462 Silent p.P108P 0.21 TCGA-WS-AB45-01 10 31134017 31134017 C T ZNF438 Missense_Mutation p.R787Q 0.16 tolerated(0.11) benign(0.027) TCGA-WS-AB45-01 10 3207621 3207621 G A PITRM1 Missense_Mutation p.R173C 0.13 deleterious(0) probably_damaging(0.977) TCGA-WS-AB45-01 10 33559736 33559736 A - NRP1 Frame_Shift_Del p.F99Lfs*9 0.11 TCGA-WS-AB45-01 10 34671498 34671498 C A PARD3 Missense_Mutation p.G457C 0.16 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 10 38121696 38121697 - T ZNF248 Frame_Shift_Ins p.R196Kfs*5 0.09 TCGA-WS-AB45-01 10 445091 445091 G A DIP2C Silent p.A406A 0.10 TCGA-WS-AB45-01 10 46224391 46224391 C T FAM21C Missense_Mutation p.R70W 0.17 deleterious(0) probably_damaging(0.986) TCGA-WS-AB45-01 10 46246242 46246242 G A FAM21C Missense_Mutation p.R296H 0.27 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 10 46968622 46968622 G A SYT15 Missense_Mutation p.P105L 0.16 tolerated(0.77) benign(0.001) TCGA-WS-AB45-01 10 48370459 48370460 - G ZNF488 5'UTR 0.13 TCGA-WS-AB45-01 10 48389834 48389834 G T RBP3 Silent p.P348P 0.09 TCGA-WS-AB45-01 10 48429402 48429402 G A GDF10 Silent p.L162L 0.19 TCGA-WS-AB45-01 10 49365398 49365398 A G FRMPD2 Silent p.S1299S 0.26 TCGA-WS-AB45-01 10 50038852 50038852 G A WDFY4 Missense_Mutation p.G2150R 0.12 deleterious(0.01) possibly_damaging(0.821) TCGA-WS-AB45-01 10 50531251 50531251 T C C10orf71 Missense_Mutation p.S221P 0.16 tolerated(0.08) benign(0.056) TCGA-WS-AB45-01 10 50686456 50686456 G A ERCC6 Missense_Mutation p.R744W 0.23 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 10 50691540 50691540 G A ERCC6 Missense_Mutation p.A615V 0.14 tolerated(0.38) benign(0.013) TCGA-WS-AB45-01 10 50740627 50740627 G A ERCC6-PGBD3 Silent p.D128D 0.20 TCGA-WS-AB45-01 10 50854688 50854688 G A CHAT Missense_Mutation p.G417R 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 10 5567733 5567733 G A CALML3 3'UTR 0.08 TCGA-WS-AB45-01 10 58119271 58119271 C T ZWINT Missense_Mutation p.R149H 0.12 tolerated(0.37) possibly_damaging(0.579) TCGA-WS-AB45-01 10 5827160 5827160 T - GDI2 Frame_Shift_Del p.S222Afs*20 0.10 TCGA-WS-AB45-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.09 TCGA-WS-AB45-01 10 61835579 61835579 T C ANK3 Missense_Mutation p.D1687G 0.16 benign(0.239) TCGA-WS-AB45-01 10 62149221 62149221 T - ANK3 Frame_Shift_Del p.R26Gfs*21 0.14 TCGA-WS-AB45-01 10 69648688 69648688 G A SIRT1 Missense_Mutation p.R199Q 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-WS-AB45-01 10 70931119 70931119 A G VPS26A 3'UTR 0.12 TCGA-WS-AB45-01 10 71025493 71025493 A - HKDC1 Frame_Shift_Del p.R844Gfs*7 0.11 TCGA-WS-AB45-01 10 71025534 71025534 A G HKDC1 Missense_Mutation p.T856A 0.11 deleterious(0.03) benign(0.365) TCGA-WS-AB45-01 10 71332229 71332229 G A NEUROG3 Nonsense_Mutation p.R191* 0.09 TCGA-WS-AB45-01 10 71905729 71905729 A G TYSND1 Missense_Mutation p.M205T 0.08 tolerated(0.07) benign(0.002) TCGA-WS-AB45-01 10 72358458 72358458 T C PRF1 Missense_Mutation p.D340G 0.16 tolerated(0.14) possibly_damaging(0.869) TCGA-WS-AB45-01 10 72358914 72358914 G A PRF1 Missense_Mutation p.P188L 0.14 deleterious(0.02) benign(0.425) TCGA-WS-AB45-01 10 72538355 72538355 C T TBATA Silent p.R155R 0.15 TCGA-WS-AB45-01 10 73046597 73046597 G A UNC5B Missense_Mutation p.R235Q 0.11 deleterious(0) probably_damaging(0.974) TCGA-WS-AB45-01 10 73056443 73056443 G A UNC5B Missense_Mutation p.V812M 0.10 deleterious(0.04) probably_damaging(0.99) TCGA-WS-AB45-01 10 73104005 73104005 C T SLC29A3 Missense_Mutation p.P114S 0.16 deleterious(0.04) benign(0.356) TCGA-WS-AB45-01 10 73472895 73472895 C T C10orf105 3'UTR 0.12 TCGA-WS-AB45-01 10 73490237 73490237 C T CDH23 Silent p.Y1202Y 0.16 TCGA-WS-AB45-01 10 73767450 73767450 C T CHST3 Missense_Mutation p.R221C 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 10 74096321 74096321 C T DNAJB12 Missense_Mutation p.A357T 0.12 tolerated(0.34) possibly_damaging(0.701) TCGA-WS-AB45-01 10 74645640 74645640 C T MCU 3'UTR 0.23 TCGA-WS-AB45-01 10 75003200 75003200 T A DNAJC9 Missense_Mutation p.K247N 0.10 deleterious(0.01) unknown(0) TCGA-WS-AB45-01 10 75197946 75197946 G A PPP3CB 3'UTR 0.08 TCGA-WS-AB45-01 10 75397515 75397515 G T MYOZ1 Missense_Mutation p.S80Y 0.15 deleterious(0) possibly_damaging(0.544) TCGA-WS-AB45-01 10 75407055 75407055 C T SYNPO2L Silent p.R785R 0.18 TCGA-WS-AB45-01 10 75407392 75407392 T C SYNPO2L Missense_Mutation p.E673G 0.10 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 10 75597242 75597242 G A CAMK2G Missense_Mutation p.S325L 0.18 tolerated_low_confidence(0.08) benign(0.265) TCGA-WS-AB45-01 10 76602675 76602675 A - KAT6B Frame_Shift_Del p.K22Sfs*90 0.13 TCGA-WS-AB45-01 10 76818096 76818096 C T DUPD1 Nonsense_Mutation p.W59* 0.19 TCGA-WS-AB45-01 10 76990727 76990727 G A VDAC2 Missense_Mutation p.A304T 0.16 deleterious(0.02) benign(0.221) TCGA-WS-AB45-01 10 79163663 79163663 G A KCNMA1 Missense_Mutation p.A166V 0.08 tolerated(0.45) probably_damaging(0.995) TCGA-WS-AB45-01 10 79767468 79767468 A T POLR3A Missense_Mutation p.V689D 0.26 tolerated(0.06) benign(0.026) TCGA-WS-AB45-01 10 85997389 85997389 G - LRIT1 Frame_Shift_Del p.P59Rfs*109 0.11 TCGA-WS-AB45-01 10 860715 860715 C T LARP4B Silent p.A632A 0.19 TCGA-WS-AB45-01 10 871018 871018 A G LARP4B Silent p.L491L 0.22 TCGA-WS-AB45-01 10 88422103 88422103 C T OPN4 Missense_Mutation p.R401C 0.09 deleterious(0.02) benign(0.139) TCGA-WS-AB45-01 10 88912588 88912588 G A FAM35A Missense_Mutation p.A493T 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.14 TCGA-WS-AB45-01 10 93221062 93221062 T - HECTD2 Frame_Shift_Del p.Y155Ifs*2 0.08 TCGA-WS-AB45-01 10 93812024 93812024 G A CPEB3 Missense_Mutation p.P681L 0.15 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 10 94688101 94688101 C T EXOC6 Silent p.D298D 0.16 TCGA-WS-AB45-01 10 95658460 95658460 G A SLC35G1 Missense_Mutation p.R104Q 0.13 deleterious(0) probably_damaging(0.988) TCGA-WS-AB45-01 10 95720190 95720190 C A PIPSL RNA 0.13 TCGA-WS-AB45-01 10 97599531 97599531 C T ENTPD1 Silent p.G88G 0.09 TCGA-WS-AB45-01 10 97810125 97810125 G A CCNJ Missense_Mutation p.R61H 0.18 deleterious(0) possibly_damaging(0.906) TCGA-WS-AB45-01 10 98408503 98408503 G A PIK3AP1 Silent p.S366S 0.10 TCGA-WS-AB45-01 10 98708882 98708882 G A LCOR Missense_Mutation p.S23N 0.14 tolerated(0.28) benign(0.002) TCGA-WS-AB45-01 10 98742785 98742785 A - C10orf12 Frame_Shift_Del p.E549Kfs*54 0.12 TCGA-WS-AB45-01 10 98773831 98773831 G A SLIT1 Silent p.G1018G 0.08 TCGA-WS-AB45-01 10 99080773 99080773 G A FRAT1 3'UTR 0.12 TCGA-WS-AB45-01 10 99131794 99131794 C T RRP12 Intron 0.19 TCGA-WS-AB45-01 10 99156000 99156000 G A RRP12 Missense_Mutation p.T143M 0.15 deleterious(0) possibly_damaging(0.847) TCGA-WS-AB45-01 11 1010670 1010670 G A AP2A2 3'UTR 0.16 TCGA-WS-AB45-01 11 1016221 1016221 C T MUC6 Missense_Mutation p.A2194T 0.20 benign(0.042) TCGA-WS-AB45-01 11 102398671 102398671 T - MMP7 Frame_Shift_Del p.N51Mfs*5 0.20 TCGA-WS-AB45-01 11 102487788 102487788 C T MMP20 Silent p.A43A 0.10 TCGA-WS-AB45-01 11 1029248 1029248 A G MUC6 Missense_Mutation p.C419R 0.14 unknown(0) TCGA-WS-AB45-01 11 103058085 103058085 G A DYNC2H1 Missense_Mutation p.A2304T 0.13 benign(0.03) TCGA-WS-AB45-01 11 103093704 103093704 G A DYNC2H1 Missense_Mutation p.R3081H 0.20 probably_damaging(0.998) TCGA-WS-AB45-01 11 104901961 104901961 G T CASP1 Silent p.G128G 0.12 TCGA-WS-AB45-01 11 107197762 107197762 C T CWF19L2 Missense_Mutation p.M853I 0.14 deleterious(0.02) possibly_damaging(0.678) TCGA-WS-AB45-01 11 10825035 10825035 G A EIF4G2 Nonsense_Mutation p.R269* 0.18 TCGA-WS-AB45-01 11 10828800 10828800 A G EIF4G2 Splice_Site p.X14_splice 0.19 TCGA-WS-AB45-01 11 108352073 108352074 - CT KDELC2 Frame_Shift_Ins p.A311Efs*27 0.14 TCGA-WS-AB45-01 11 10875781 10875781 T - ZBED5 Frame_Shift_Del p.I238* 0.10 TCGA-WS-AB45-01 11 1093684 1093684 C - MUC2 Frame_Shift_Del p.T1837Pfs*11 0.18 TCGA-WS-AB45-01 11 111367847 111367847 T - BTG4 Intron 0.21 TCGA-WS-AB45-01 11 111411631 111411631 C T LAYN Silent p.A21A 0.12 TCGA-WS-AB45-01 11 112097087 112097087 T C PTS 5'Flank 0.08 TCGA-WS-AB45-01 11 116729026 116729026 T C SIK3 Missense_Mutation p.Q946R 0.13 tolerated_low_confidence(1) possibly_damaging(0.885) TCGA-WS-AB45-01 11 117049945 117049945 G A SIDT2 5'UTR 0.15 TCGA-WS-AB45-01 11 117073618 117073618 C T TAGLN 5'UTR 0.10 TCGA-WS-AB45-01 11 117780640 117780640 C T TMPRSS13 Silent p.A330A 0.16 TCGA-WS-AB45-01 11 117789256 117789256 C T TMPRSS13 Missense_Mutation p.A107T 0.16 tolerated_low_confidence(0.11) probably_damaging(0.982) TCGA-WS-AB45-01 11 117800009 117800009 C T TMPRSS13 Missense_Mutation p.S5N 0.18 tolerated_low_confidence(0.17) possibly_damaging(0.682) TCGA-WS-AB45-01 11 117983983 117983983 G T TMPRSS4 Splice_Site p.X248_splice 0.12 TCGA-WS-AB45-01 11 118065052 118065052 C T AMICA1 Silent p.Q391Q 0.10 TCGA-WS-AB45-01 11 118210172 118210172 G T CD3D Silent p.V148V 0.18 TCGA-WS-AB45-01 11 118347553 118347553 C T KMT2A Nonsense_Mutation p.R1064* 0.16 TCGA-WS-AB45-01 11 118773127 118773127 C - BCL9L Frame_Shift_Del p.G442Afs*21 0.12 TCGA-WS-AB45-01 11 118963677 118963677 C T HMBS Silent p.D286D 0.23 TCGA-WS-AB45-01 11 118984834 118984834 G A C2CD2L Silent p.A557A 0.15 TCGA-WS-AB45-01 11 119206484 119206484 C T RNF26 Missense_Mutation p.R218C 0.22 deleterious(0.04) possibly_damaging(0.634) TCGA-WS-AB45-01 11 119210290 119210290 C A C1QTNF5 Silent p.R161R 0.15 TCGA-WS-AB45-01 11 11944348 11944348 C T USP47 Silent p.N364N 0.21 TCGA-WS-AB45-01 11 119535866 119535866 C T PVRL1 Missense_Mutation p.R382Q 0.12 tolerated(0.4) benign(0.007) TCGA-WS-AB45-01 11 119549387 119549387 C T PVRL1 Silent p.P56P 0.11 TCGA-WS-AB45-01 11 120998542 120998542 C T TECTA Missense_Mutation p.A619V 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-WS-AB45-01 11 121174117 121174117 T - SC5D Frame_Shift_Del p.F13Lfs*23 0.10 TCGA-WS-AB45-01 11 123900742 123900742 G A OR10G8 Missense_Mutation p.R138H 0.13 deleterious(0.01) possibly_damaging(0.708) TCGA-WS-AB45-01 11 124013231 124013231 G T VWA5A Missense_Mutation p.K702N 0.21 tolerated(0.29) benign(0.096) TCGA-WS-AB45-01 11 124743650 124743650 C A ROBO3 Missense_Mutation p.P559H 0.23 deleterious(0.01) possibly_damaging(0.774) TCGA-WS-AB45-01 11 125448039 125448039 A G EI24 Silent p.S109S 0.09 TCGA-WS-AB45-01 11 125776035 125776035 G A DDX25 Missense_Mutation p.R81H 0.14 tolerated(0.22) benign(0) TCGA-WS-AB45-01 11 125875724 125875724 T C CDON Missense_Mutation p.Y594C 0.16 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 11 126146105 126146105 C T FOXRED1 Missense_Mutation p.P321L 0.15 deleterious(0.01) benign(0.365) TCGA-WS-AB45-01 11 12958831 12958832 CT - TEAD1 3'UTR 0.09 TCGA-WS-AB45-01 11 130078512 130078512 C T ST14 Silent p.D734D 0.11 TCGA-WS-AB45-01 11 134244871 134244871 C T GLB1L2 Silent p.I610I 0.08 TCGA-WS-AB45-01 11 13749121 13749121 C T FAR1 Missense_Mutation p.R426W 0.14 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 11 1477640 1477640 G - BRSK2 Frame_Shift_Del p.P626Qfs*55 0.11 TCGA-WS-AB45-01 11 15197496 15197496 G A INSC Missense_Mutation p.R136H 0.15 tolerated(0.14) possibly_damaging(0.729) TCGA-WS-AB45-01 11 15994308 15994309 - G SOX6 3'UTR 0.24 TCGA-WS-AB45-01 11 16036588 16036588 C T SOX6 Silent p.T544T 0.08 TCGA-WS-AB45-01 11 16877443 16877443 C T PLEKHA7 Silent p.S108S 0.16 TCGA-WS-AB45-01 11 17118662 17118662 C T PIK3C2A Missense_Mutation p.R1423Q 0.09 tolerated(0.07) possibly_damaging(0.776) TCGA-WS-AB45-01 11 17742836 17742836 C T MYOD1 Silent p.S248S 0.08 TCGA-WS-AB45-01 11 18382162 18382162 G A GTF2H1 Missense_Mutation p.V490I 0.13 tolerated(0.09) benign(0.17) TCGA-WS-AB45-01 11 1856205 1856205 C A SYT8 Intron 0.16 TCGA-WS-AB45-01 11 18586510 18586510 T - UEVLD Frame_Shift_Del p.T181Qfs*19 0.20 TCGA-WS-AB45-01 11 18723188 18723188 C T TMEM86A Missense_Mutation p.R119W 0.08 tolerated(0.22) probably_damaging(0.971) TCGA-WS-AB45-01 11 18955772 18955772 A - MRGPRX1 Frame_Shift_Del p.L187Yfs*13 0.12 TCGA-WS-AB45-01 11 19251528 19251528 T C E2F8 Missense_Mutation p.R456G 0.31 tolerated(0.08) benign(0.034) TCGA-WS-AB45-01 11 19253912 19253912 A T E2F8 Missense_Mutation p.I312N 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 11 19735494 19735494 G A NAV2 Missense_Mutation p.G85R 0.12 deleterious_low_confidence(0.02) probably_damaging(0.914) TCGA-WS-AB45-01 11 2323378 2323378 T C TSPAN32 5'UTR 0.08 TCGA-WS-AB45-01 11 2593335 2593335 G A KCNQ1 Missense_Mutation p.R259H 0.19 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 11 26582516 26582516 G A MUC15 3'UTR 0.12 TCGA-WS-AB45-01 11 27371864 27371864 T - CCDC34 Intron 0.11 TCGA-WS-AB45-01 11 291099 291099 G A ATHL1 Missense_Mutation p.V298I 0.18 tolerated(0.31) benign(0.243) TCGA-WS-AB45-01 11 2930855 2930855 G A SLC22A18 Missense_Mutation p.A151T 0.18 tolerated(0.5) benign(0.055) TCGA-WS-AB45-01 11 30354526 30354526 C T ARL14EP Silent p.T180T 0.07 TCGA-WS-AB45-01 11 3125494 3125494 C T OSBPL5 Silent p.T391T 0.21 TCGA-WS-AB45-01 11 3141851 3141851 G A OSBPL5 Missense_Mutation p.R136C 0.17 deleterious(0) probably_damaging(0.99) TCGA-WS-AB45-01 11 34668230 34668230 C T EHF Silent p.N136N 0.29 TCGA-WS-AB45-01 11 36511618 36511618 C T TRAF6 Missense_Mutation p.E447K 0.12 tolerated(0.82) probably_damaging(0.994) TCGA-WS-AB45-01 11 36599931 36599931 T - RAG1 3'UTR 0.14 TCGA-WS-AB45-01 11 3688593 3688593 G A CHRNA10 Missense_Mutation p.P255L 0.22 tolerated(1) benign(0.131) TCGA-WS-AB45-01 11 379512 379512 G - B4GALNT4 Frame_Shift_Del p.G768Afs*19 0.11 TCGA-WS-AB45-01 11 380410 380410 G A B4GALNT4 Missense_Mutation p.R945H 0.14 deleterious(0) unknown(0) TCGA-WS-AB45-01 11 400077 400077 C - PKP3 Frame_Shift_Del p.L464Sfs*183 0.20 TCGA-WS-AB45-01 11 40137615 40137615 G T LRRC4C Silent p.T76T 0.12 TCGA-WS-AB45-01 11 45671407 45671407 G A CHST1 Missense_Mutation p.T356M 0.17 deleterious(0.02) probably_damaging(0.915) TCGA-WS-AB45-01 11 46341827 46341827 G A CREB3L1 Missense_Mutation p.S424N 0.09 tolerated(0.3) benign(0.213) TCGA-WS-AB45-01 11 46367084 46367084 G A DGKZ Missense_Mutation p.R3H 0.09 tolerated(0.13) benign(0.072) TCGA-WS-AB45-01 11 46407300 46407300 C A CHRM4 Missense_Mutation p.G270C 0.11 tolerated(0.13) probably_damaging(0.999) TCGA-WS-AB45-01 11 46408059 46408059 G A CHRM4 Missense_Mutation p.R17C 0.14 tolerated(0.05) benign(0.326) TCGA-WS-AB45-01 11 46563725 46563725 G A AMBRA1 Silent p.S524S 0.23 TCGA-WS-AB45-01 11 46744754 46744754 C T F2 Missense_Mutation p.T114M 0.07 tolerated(0.87) benign(0.013) TCGA-WS-AB45-01 11 47195335 47195335 C T ARFGAP2 Silent p.P179P 0.20 TCGA-WS-AB45-01 11 47606064 47606064 C T NDUFS3 3'UTR 0.13 TCGA-WS-AB45-01 11 47711960 47711960 G A AGBL2 Silent p.T433T 0.08 TCGA-WS-AB45-01 11 490672 490672 C T PTDSS2 3'UTR 0.14 TCGA-WS-AB45-01 11 494941 494941 C T RNH1 Missense_Mutation p.G414S 0.12 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 11 499102 499102 G A RNH1 Missense_Mutation p.T176M 0.22 tolerated(0.14) benign(0.013) TCGA-WS-AB45-01 11 540745 540745 C T LRRC56 Missense_Mutation p.R21W 0.21 deleterious(0.04) benign(0.051) TCGA-WS-AB45-01 11 5537557 5537557 C A UBQLNL Missense_Mutation p.G39C 0.16 deleterious(0) probably_damaging(0.983) TCGA-WS-AB45-01 11 554880 554880 A G C11orf35 3'UTR 0.18 TCGA-WS-AB45-01 11 55579324 55579324 A T OR5L1 Missense_Mutation p.N128Y 0.11 deleterious(0.02) benign(0.02) TCGA-WS-AB45-01 11 55703290 55703290 A T OR5I1 Missense_Mutation p.I196N 0.16 deleterious(0.02) possibly_damaging(0.549) TCGA-WS-AB45-01 11 56949592 56949592 G A LRRC55 Silent p.S75S 0.15 TCGA-WS-AB45-01 11 56949813 56949813 G A LRRC55 Missense_Mutation p.R149Q 0.13 tolerated(0.21) benign(0.001) TCGA-WS-AB45-01 11 57080692 57080692 C A TNKS1BP1 Missense_Mutation p.W490C 0.28 tolerated(0.14) benign(0.016) TCGA-WS-AB45-01 11 57310172 57310172 G A SMTNL1 Silent p.A37A 0.15 TCGA-WS-AB45-01 11 57947961 57947961 G T OR9Q1 3'UTR 0.13 TCGA-WS-AB45-01 11 58343333 58343333 T C LPXN Intron 0.17 TCGA-WS-AB45-01 11 58722283 58722283 G A GLYATL1 Missense_Mutation p.R107H 0.16 tolerated(0.59) benign(0) TCGA-WS-AB45-01 11 58979785 58979785 T A MPEG1 Missense_Mutation p.N185I 0.10 deleterious(0) probably_damaging(0.984) TCGA-WS-AB45-01 11 5906226 5906226 G A OR52E4 Missense_Mutation p.R235Q 0.05 tolerated(0.12) benign(0.133) TCGA-WS-AB45-01 11 59245300 59245300 C T OR4D10 Missense_Mutation p.A133V 0.18 tolerated(1) benign(0) TCGA-WS-AB45-01 11 601660 601660 C T PHRF1 Missense_Mutation p.R371C 0.15 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 11 60310039 60310039 C T MS4A13 Silent p.S150S 0.18 TCGA-WS-AB45-01 11 60535069 60535069 C T MS4A15 Missense_Mutation p.R97C 0.15 tolerated(0.16) probably_damaging(0.93) TCGA-WS-AB45-01 11 608263 608263 C - PHRF1 Frame_Shift_Del p.P937Qfs*23 0.21 TCGA-WS-AB45-01 11 61096912 61096912 G A DDB1 Missense_Mutation p.R158C 0.14 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 11 61111734 61111734 G A DAK Missense_Mutation p.R410H 0.18 deleterious(0.01) probably_damaging(0.922) TCGA-WS-AB45-01 11 61197258 61197258 A - CPSF7 Frame_Shift_Del p.F15Lfs*36 0.15 TCGA-WS-AB45-01 11 61511956 61511956 C T DAGLA Missense_Mutation p.R1042C 0.17 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-WS-AB45-01 11 6191349 6191349 C T OR52B2 Missense_Mutation p.V70I 0.12 tolerated(0.81) benign(0) TCGA-WS-AB45-01 11 61919240 61919240 C T INCENP Missense_Mutation p.P850L 0.09 tolerated(0.13) benign(0.304) TCGA-WS-AB45-01 11 6231177 6231177 G A C11orf42 Missense_Mutation p.R57H 0.19 tolerated(0.07) possibly_damaging(0.877) TCGA-WS-AB45-01 11 62349076 62349076 C T TUT1 Missense_Mutation p.R162H 0.12 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 11 62363357 62363358 TG - MTA2 Frame_Shift_Del p.Q374Vfs*11 0.11 TCGA-WS-AB45-01 11 62393843 62393843 C T GANAB Missense_Mutation p.R885H 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-WS-AB45-01 11 62445420 62445420 T - UBXN1 Frame_Shift_Del p.K154Rfs*5 0.12 TCGA-WS-AB45-01 11 62458817 62458817 C T BSCL2 Missense_Mutation p.V314M 0.14 deleterious(0.01) possibly_damaging(0.65) TCGA-WS-AB45-01 11 62519946 62519946 C T ZBTB3 Silent p.L447L 0.16 TCGA-WS-AB45-01 11 62652985 62652985 C T SLC3A2 Nonsense_Mutation p.R452* 0.12 TCGA-WS-AB45-01 11 62677213 62677213 G A CHRM1 Missense_Mutation p.R454C 0.20 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-WS-AB45-01 11 62751848 62751848 G A SLC22A6 Silent p.C105C 0.26 TCGA-WS-AB45-01 11 63885622 63885622 G A FLRT1 Missense_Mutation p.R628H 0.13 tolerated(0.19) benign(0.003) TCGA-WS-AB45-01 11 63886076 63886079 TTTC - FLRT1 3'UTR 0.16 TCGA-WS-AB45-01 11 64032442 64032442 C T PLCB3 Missense_Mutation p.T891M 0.14 tolerated(0.16) benign(0.001) TCGA-WS-AB45-01 11 64136169 64136169 C - RPS6KA4 Intron 0.17 TCGA-WS-AB45-01 11 64534418 64534418 C T SF1 Silent p.P637P 0.18 TCGA-WS-AB45-01 11 64600190 64600190 C T CDC42BPG Missense_Mutation p.R964Q 0.13 deleterious(0) probably_damaging(0.953) TCGA-WS-AB45-01 11 6461427 6461427 G A HPX Missense_Mutation p.R102C 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 11 64621946 64621946 G A EHD1 Silent p.A488A 0.21 TCGA-WS-AB45-01 11 64877254 64877254 C T VPS51 Silent p.Y579Y 0.17 TCGA-WS-AB45-01 11 64879019 64879019 T C VPS51 Missense_Mutation p.M770T 0.20 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 11 64950605 64950605 C T CAPN1 Silent p.L92L 0.20 TCGA-WS-AB45-01 11 65299134 65299134 C T SCYL1 Missense_Mutation p.R366C 0.22 deleterious(0) probably_damaging(0.944) TCGA-WS-AB45-01 11 65393524 65393524 C T PCNXL3 Silent p.R1126R 0.14 TCGA-WS-AB45-01 11 65545525 65545525 G A AP5B1 Silent p.R813R 0.10 TCGA-WS-AB45-01 11 6568835 6568835 C G DNHD1 Silent p.R2222R 0.20 TCGA-WS-AB45-01 11 65688980 65688980 C T DRAP1 3'UTR 0.13 TCGA-WS-AB45-01 11 65714716 65714716 G A TSGA10IP RNA 0.18 TCGA-WS-AB45-01 11 65733245 65733245 C T SART1 Missense_Mutation p.R245W 0.14 deleterious(0) possibly_damaging(0.823) TCGA-WS-AB45-01 11 65793029 65793029 G - CATSPER1 Frame_Shift_Del p.S275Vfs*60 0.12 TCGA-WS-AB45-01 11 65810617 65810617 G A GAL3ST3 Silent p.D219D 0.16 TCGA-WS-AB45-01 11 65983994 65983994 G A PACS1 Missense_Mutation p.R270H 0.05 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 11 66238799 66238799 A C PELI3 Missense_Mutation p.K104T 0.16 deleterious(0) benign(0.419) TCGA-WS-AB45-01 11 66299342 66299342 G A BBS1 Intron 0.12 TCGA-WS-AB45-01 11 66358260 66358260 C A CCDC87 Nonsense_Mutation p.G743* 0.13 TCGA-WS-AB45-01 11 66626174 66626174 G A LRFN4 Missense_Mutation p.R320Q 0.12 deleterious(0.01) possibly_damaging(0.818) TCGA-WS-AB45-01 11 6703381 6703381 T G MRPL17 Missense_Mutation p.S166R 0.17 tolerated(0.29) benign(0.001) TCGA-WS-AB45-01 11 67077595 67077596 - C SSH3 Frame_Shift_Ins p.E492* 0.11 TCGA-WS-AB45-01 11 67172886 67172886 G A TBC1D10C Missense_Mutation p.R90Q 0.18 tolerated(0.58) probably_damaging(0.996) TCGA-WS-AB45-01 11 67174385 67174385 G A TBC1D10C Missense_Mutation p.V246I 0.19 tolerated(0.79) probably_damaging(0.997) TCGA-WS-AB45-01 11 67177070 67177070 G T TBC1D10C Missense_Mutation p.V396L 0.08 tolerated(0.16) benign(0.066) TCGA-WS-AB45-01 11 67262656 67262656 C T PITPNM1 Silent p.S841S 0.12 TCGA-WS-AB45-01 11 67795317 67795317 C T ALDH3B1 Silent p.N437N 0.13 TCGA-WS-AB45-01 11 681069 681069 A - DEAF1 Frame_Shift_Del p.F297Lfs*18 0.13 TCGA-WS-AB45-01 11 68701975 68701975 C T IGHMBP2 Silent p.D527D 0.23 TCGA-WS-AB45-01 11 68747804 68747804 G A MRGPRD Missense_Mutation p.R218W 0.15 deleterious(0.02) possibly_damaging(0.761) TCGA-WS-AB45-01 11 6898788 6898788 C T OR10A4 Missense_Mutation p.R304W 0.09 deleterious(0.02) benign(0.021) TCGA-WS-AB45-01 11 6913341 6913341 G A OR2D2 Missense_Mutation p.R131C 0.14 deleterious(0.01) benign(0.012) TCGA-WS-AB45-01 11 71146335 71146335 C T DHCR7 3'UTR 0.15 TCGA-WS-AB45-01 11 71720391 71720391 G A NUMA1 Missense_Mutation p.R1588C 0.22 possibly_damaging(0.743) TCGA-WS-AB45-01 11 71726716 71726718 CTT - NUMA1 In_Frame_Del p.K611del 0.09 TCGA-WS-AB45-01 11 71809457 71809457 G A LAMTOR1 Missense_Mutation p.R91C 0.14 tolerated(0.09) benign(0.113) TCGA-WS-AB45-01 11 72418285 72418285 C T ARAP1 Missense_Mutation p.C553Y 0.19 deleterious(0) probably_damaging(0.979) TCGA-WS-AB45-01 11 72945789 72945789 C T P2RY2 Silent p.F195F 0.16 TCGA-WS-AB45-01 11 73020549 73020549 G - ARHGEF17 Frame_Shift_Del p.G290Efs*24 0.11 TCGA-WS-AB45-01 11 73066916 73066916 G A ARHGEF17 Missense_Mutation p.R1194H 0.14 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 11 73120568 73120568 C A FAM168A Missense_Mutation p.G187C 0.09 deleterious(0) probably_damaging(0.991) TCGA-WS-AB45-01 11 73362894 73362894 C T PLEKHB1 Silent p.G103G 0.12 TCGA-WS-AB45-01 11 74460034 74460034 G - RNF169 Frame_Shift_Del p.A38Pfs*140 0.12 TCGA-WS-AB45-01 11 74547560 74547560 A - RNF169 Frame_Shift_Del p.K639Nfs*49 0.09 TCGA-WS-AB45-01 11 74700073 74700073 C A NEU3 5'UTR 0.26 TCGA-WS-AB45-01 11 74799967 74799967 G A OR2AT4 Silent p.Y264Y 0.11 TCGA-WS-AB45-01 11 75316768 75316769 - T MAP6 Intron 0.14 TCGA-WS-AB45-01 11 76237675 76237675 C T C11orf30 Missense_Mutation p.T664M 0.04 deleterious(0) probably_damaging(0.985) TCGA-WS-AB45-01 11 76372167 76372167 G A LRRC32 Missense_Mutation p.A157V 0.17 deleterious(0.01) probably_damaging(0.93) TCGA-WS-AB45-01 11 763825 763825 G A TALDO1 Missense_Mutation p.R239H 0.18 deleterious(0.03) benign(0.102) TCGA-WS-AB45-01 11 771078 771078 C T PDDC1 Missense_Mutation p.V191M 0.13 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 11 78516525 78516525 T C TENM4 Missense_Mutation p.D664G 0.07 deleterious(0.01) possibly_damaging(0.821) TCGA-WS-AB45-01 11 7981343 7981343 T C NLRP10 Missense_Mutation p.S606G 0.15 deleterious(0.04) benign(0) TCGA-WS-AB45-01 11 7981960 7981960 C A NLRP10 Missense_Mutation p.G400V 0.12 tolerated(0.09) benign(0.046) TCGA-WS-AB45-01 11 82643976 82643976 T - C11orf82 Frame_Shift_Del p.L534Yfs*16 0.10 TCGA-WS-AB45-01 11 85445703 85445703 T C SYTL2 Silent p.P222P 0.12 TCGA-WS-AB45-01 11 85593677 85593677 A - CCDC83 Frame_Shift_Del p.K102Nfs*12 0.14 TCGA-WS-AB45-01 11 85692807 85692807 C T PICALM Missense_Mutation p.G554R 0.18 deleterious(0) probably_damaging(0.974) TCGA-WS-AB45-01 11 85961377 85961377 C T EED Missense_Mutation p.R52C 0.15 deleterious(0) probably_damaging(0.988) TCGA-WS-AB45-01 11 88045664 88045665 - C CTSC Frame_Shift_Ins p.V126Gfs*3 0.16 TCGA-WS-AB45-01 11 904729 904729 C T CHID1 Missense_Mutation p.A30T 0.10 tolerated_low_confidence(0.06) possibly_damaging(0.511) TCGA-WS-AB45-01 11 93400963 93400963 C T KIAA1731 Missense_Mutation p.A100V 0.22 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 11 93553995 93553995 G A VSTM5 Missense_Mutation p.A158V 0.22 tolerated(0.06) benign(0.268) TCGA-WS-AB45-01 11 93886699 93886699 G A PANX1 Missense_Mutation p.R75H 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-WS-AB45-01 11 94279079 94279079 T - FUT4 3'UTR 0.10 TCGA-WS-AB45-01 11 9450681 9450681 A - IPO7 Frame_Shift_Del p.M511Cfs*3 0.17 TCGA-WS-AB45-01 11 95516250 95516250 C T FAM76B Missense_Mutation p.R181H 0.09 tolerated(0.11) benign(0.001) TCGA-WS-AB45-01 11 994094 994094 C T AP2A2 Missense_Mutation p.P602L 0.07 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 12 102142888 102142888 A - GNPTAB Frame_Shift_Del p.F1228Lfs*5 0.11 TCGA-WS-AB45-01 12 102179792 102179792 T C GNPTAB Missense_Mutation p.D190G 0.18 tolerated(0.05) benign(0.04) TCGA-WS-AB45-01 12 10374503 10374503 G T GABARAPL1 3'UTR 0.22 TCGA-WS-AB45-01 12 10374514 10374514 G A GABARAPL1 3'UTR 0.14 TCGA-WS-AB45-01 12 105425572 105425572 G A ALDH1L2 Silent p.Y795Y 0.08 TCGA-WS-AB45-01 12 106461401 106461401 G T NUAK1 Missense_Mutation p.P389T 0.07 tolerated(0.15) benign(0.003) TCGA-WS-AB45-01 12 106773845 106773845 T C POLR3B Silent p.A217A 0.11 TCGA-WS-AB45-01 12 108013784 108013784 C T BTBD11 Missense_Mutation p.T825M 0.15 tolerated(0.06) probably_damaging(0.988) TCGA-WS-AB45-01 12 108169428 108169428 C T ASCL4 Missense_Mutation p.R146C 0.18 tolerated(0.06) benign(0.005) TCGA-WS-AB45-01 12 108985727 108985727 C T TMEM119 Missense_Mutation p.G145R 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 12 108986027 108986027 C T TMEM119 Missense_Mutation p.E45K 0.23 deleterious(0.01) possibly_damaging(0.84) TCGA-WS-AB45-01 12 109278864 109278864 C T DAO Nonsense_Mutation p.Q28* 0.11 TCGA-WS-AB45-01 12 109634876 109634876 G A ACACB Missense_Mutation p.A849T 0.14 deleterious(0.03) benign(0.044) TCGA-WS-AB45-01 12 110019222 110019222 G A MVK Missense_Mutation p.V132I 0.16 tolerated(0.24) benign(0.007) TCGA-WS-AB45-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.10 TCGA-WS-AB45-01 12 110206682 110206682 C T FAM222A Silent p.C316C 0.14 TCGA-WS-AB45-01 12 11061109 11061109 G A TAS2R13 Silent p.Y263Y 0.11 TCGA-WS-AB45-01 12 110783133 110783133 T C ATP2A2 Missense_Mutation p.M896T 0.07 tolerated(1) benign(0.426) TCGA-WS-AB45-01 12 111072207 111072207 C T TCTN1 Intron 0.14 TCGA-WS-AB45-01 12 11139469 11139470 - A TAS2R50 5'UTR 0.20 TCGA-WS-AB45-01 12 11175056 11175056 G A TAS2R19 Nonsense_Mutation p.R39* 0.14 TCGA-WS-AB45-01 12 111758315 111758315 C T CUX2 Silent p.P834P 0.16 TCGA-WS-AB45-01 12 111856623 111856623 G A SH2B3 Missense_Mutation p.R225H 0.17 deleterious(0) probably_damaging(0.963) TCGA-WS-AB45-01 12 111954070 111954071 - T ATXN2 Frame_Shift_Ins p.T582Yfs*32 0.11 TCGA-WS-AB45-01 12 112601929 112601929 G A HECTD4 Missense_Mutation p.R4083W 0.11 probably_damaging(0.982) TCGA-WS-AB45-01 12 112623196 112623196 G A HECTD4 Missense_Mutation p.R3046W 0.16 benign(0.02) TCGA-WS-AB45-01 12 113433134 113433134 G A OAS2 Missense_Mutation p.R161Q 0.15 tolerated(0.6) possibly_damaging(0.663) TCGA-WS-AB45-01 12 113830819 113830819 C - SDS Frame_Shift_Del p.G305Afs*18 0.11 TCGA-WS-AB45-01 12 113867027 113867027 G A SDSL Missense_Mutation p.V93M 0.16 deleterious(0.01) probably_damaging(0.957) TCGA-WS-AB45-01 12 113872001 113872001 C - SDSL Frame_Shift_Del p.P141Rfs*6 0.14 TCGA-WS-AB45-01 12 114400137 114400137 T G RBM19 Missense_Mutation p.K40T 0.16 deleterious(0) probably_damaging(0.981) TCGA-WS-AB45-01 12 115112327 115112327 G A TBX3 Silent p.R471R 0.15 TCGA-WS-AB45-01 12 115112348 115112348 C T TBX3 Silent p.P464P 0.15 TCGA-WS-AB45-01 12 117160914 117160914 G A C12orf49 Missense_Mutation p.R76C 0.21 deleterious(0) probably_damaging(0.988) TCGA-WS-AB45-01 12 117627092 117627092 T - FBXO21 Frame_Shift_Del p.A106Lfs*3 0.10 TCGA-WS-AB45-01 12 117658006 117658006 C A NOS1 Silent p.G1382G 0.14 TCGA-WS-AB45-01 12 117681123 117681123 C T NOS1 Missense_Mutation p.E1015K 0.20 tolerated(0.29) benign(0.141) TCGA-WS-AB45-01 12 119552154 119552154 G A SRRM4 Missense_Mutation p.R117Q 0.16 deleterious_low_confidence(0.02) unknown(0) TCGA-WS-AB45-01 12 120106124 120106124 G - PRKAB1 Frame_Shift_Del p.G27Afs*11 0.10 TCGA-WS-AB45-01 12 120117748 120117748 C A PRKAB1 Missense_Mutation p.A226D 0.11 deleterious(0.03) possibly_damaging(0.719) TCGA-WS-AB45-01 12 120652758 120652758 A G PXN Missense_Mutation p.V397A 0.21 deleterious(0.01) possibly_damaging(0.809) TCGA-WS-AB45-01 12 120750781 120750781 C T SIRT4 Missense_Mutation p.A296V 0.12 tolerated(0.06) possibly_damaging(0.471) TCGA-WS-AB45-01 12 120907251 120907252 - A SRSF9 Frame_Shift_Ins p.A55Rfs*22 0.09 TCGA-WS-AB45-01 12 120966883 120966883 A G COQ5 Missense_Mutation p.M21T 0.12 tolerated_low_confidence(0.68) benign(0) TCGA-WS-AB45-01 12 121670261 121670261 C T P2RX4 Missense_Mutation p.T326M 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-WS-AB45-01 12 121712122 121712122 G A CAMKK2 Missense_Mutation p.R70W 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-WS-AB45-01 12 122097120 122097120 A G MORN3 Missense_Mutation p.W94R 0.08 tolerated(0.36) benign(0.125) TCGA-WS-AB45-01 12 122212976 122212976 G A TMEM120B Silent p.Q282Q 0.12 TCGA-WS-AB45-01 12 122295333 122295333 C T HPD Silent p.T33T 0.08 TCGA-WS-AB45-01 12 122862243 122862243 A G CLIP1 Missense_Mutation p.I117T 0.11 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 12 12334343 12334343 C A LRP6 Missense_Mutation p.R336M 0.12 deleterious(0) probably_damaging(0.986) TCGA-WS-AB45-01 12 123462831 123462831 T G OGFOD2 Intron 0.28 TCGA-WS-AB45-01 12 123470816 123470816 G A PITPNM2 Missense_Mutation p.R1270C 0.11 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 12 123479488 123479488 C T PITPNM2 Missense_Mutation p.R698H 0.16 tolerated(0.1) benign(0.151) TCGA-WS-AB45-01 12 124086796 124086796 C A DDX55 Missense_Mutation p.P34Q 0.16 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 12 124189078 124189078 G A TCTN2 Splice_Site p.X538_splice 0.14 TCGA-WS-AB45-01 12 125609507 125609507 G T AACS Missense_Mutation p.A416S 0.07 tolerated(0.12) benign(0.072) TCGA-WS-AB45-01 12 129180507 129180507 G A TMEM132C Silent p.P596P 0.16 TCGA-WS-AB45-01 12 12974259 12974259 C T DDX47 Missense_Mutation p.P100L 0.15 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 12 130851689 130851689 C T PIWIL1 Missense_Mutation p.T736M 0.12 deleterious(0) probably_damaging(0.912) TCGA-WS-AB45-01 12 130926460 130926460 C T RIMBP2 Silent p.P462P 0.12 TCGA-WS-AB45-01 12 132393281 132393281 C T ULK1 Missense_Mutation p.R137C 0.21 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 12 13241768 13241768 G A GSG1 Intron 0.16 TCGA-WS-AB45-01 12 133102346 133102346 C T FBRSL1 Silent p.G172G 0.08 TCGA-WS-AB45-01 12 133158818 133158818 C T FBRSL1 Nonsense_Mutation p.R766* 0.12 TCGA-WS-AB45-01 12 133202780 133202780 C T POLE Missense_Mutation p.V2152M 0.10 deleterious(0.02) benign(0.151) TCGA-WS-AB45-01 12 133209298 133209298 C - POLE Frame_Shift_Del p.A2030Pfs*18 0.11 TCGA-WS-AB45-01 12 133225516 133225516 T C POLE Missense_Mutation p.K1383R 0.20 tolerated(0.05) benign(0.047) TCGA-WS-AB45-01 12 133238206 133238206 C T POLE Missense_Mutation p.R924H 0.17 tolerated(0.1) benign(0.095) TCGA-WS-AB45-01 12 133434133 133434133 G A CHFR Silent p.C320C 0.22 TCGA-WS-AB45-01 12 13768133 13768133 G A GRIN2B Silent p.V523V 0.14 TCGA-WS-AB45-01 12 14688687 14688687 C T PLBD1 Silent p.T250T 0.17 TCGA-WS-AB45-01 12 1887125 1887125 C T ADIPOR2 Missense_Mutation p.R133W 0.14 tolerated(0.14) benign(0.029) TCGA-WS-AB45-01 12 19593144 19593144 G A AEBP2 Missense_Mutation p.G171S 0.19 tolerated_low_confidence(0.15) unknown(0) TCGA-WS-AB45-01 12 2224640 2224640 G A CACNA1C Silent p.P100P 0.11 TCGA-WS-AB45-01 12 22487238 22487238 C - ST8SIA1 5'UTR 0.13 TCGA-WS-AB45-01 12 25034321 25034321 G A BCAT1 Nonsense_Mutation p.R114* 0.07 TCGA-WS-AB45-01 12 2675685 2675685 C T CACNA1C Missense_Mutation p.L536F 0.20 deleterious(0.04) probably_damaging(0.924) TCGA-WS-AB45-01 12 26818981 26818981 A - ITPR2 Frame_Shift_Del p.F471Lfs*2 0.17 TCGA-WS-AB45-01 12 30843439 30843439 G A IPO8 Nonsense_Mutation p.R53* 0.15 TCGA-WS-AB45-01 12 32791654 32791654 A - FGD4 Frame_Shift_Del p.K657Nfs*9 0.12 TCGA-WS-AB45-01 12 32893374 32893374 G A DNM1L Missense_Mutation p.R639Q 0.08 deleterious(0) probably_damaging(0.988) TCGA-WS-AB45-01 12 34179976 34179976 T - ALG10 3'UTR 0.12 TCGA-WS-AB45-01 12 39761718 39761718 G A KIF21A Silent p.G189G 0.22 TCGA-WS-AB45-01 12 40013271 40013271 G A ABCD2 Silent p.H49H 0.08 TCGA-WS-AB45-01 12 40702287 40702287 A - LRRK2 Frame_Shift_Del p.K1328Rfs*8 0.16 TCGA-WS-AB45-01 12 40964381 40964381 A G MUC19 3'UTR 0.16 TCGA-WS-AB45-01 12 46242711 46242711 G A ARID2 Missense_Mutation p.R558H 0.13 tolerated(0.06) probably_damaging(1) TCGA-WS-AB45-01 12 46287469 46287469 A - ARID2 Frame_Shift_Del p.N1778Ifs*13 0.12 TCGA-WS-AB45-01 12 47172480 47172480 G A SLC38A4 Missense_Mutation p.T266M 0.14 deleterious(0) possibly_damaging(0.832) TCGA-WS-AB45-01 12 48134449 48134449 C T RAPGEF3 Missense_Mutation p.R736K 0.17 tolerated(0.94) benign(0.268) TCGA-WS-AB45-01 12 48179529 48179529 G A HDAC7 Intron 0.19 TCGA-WS-AB45-01 12 48238556 48238556 G A VDR Silent p.L469L 0.17 TCGA-WS-AB45-01 12 49391437 49391437 C T DDN Missense_Mutation p.G408R 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-WS-AB45-01 12 49425549 49425549 G A KMT2D Silent p.S4313S 0.09 TCGA-WS-AB45-01 12 49431302 49431302 C T KMT2D Silent p.Q3279Q 0.14 TCGA-WS-AB45-01 12 49431305 49431305 T C KMT2D Silent p.Q3278Q 0.13 TCGA-WS-AB45-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.10 TCGA-WS-AB45-01 12 49725138 49725138 C T TROAP Missense_Mutation p.T747I 0.15 deleterious(0.02) possibly_damaging(0.571) TCGA-WS-AB45-01 12 49888572 49888572 G A SPATS2 Missense_Mutation p.G105S 0.10 tolerated(0.82) benign(0.003) TCGA-WS-AB45-01 12 49949455 49949457 AGA - KCNH3 In_Frame_Del p.K731del 0.14 TCGA-WS-AB45-01 12 50188797 50188797 G - NCKAP5L Frame_Shift_Del p.P949Rfs*23 0.12 TCGA-WS-AB45-01 12 5020575 5020575 G A KCNA1 Missense_Mutation p.E11K 0.11 deleterious_low_confidence(0.04) benign(0.426) TCGA-WS-AB45-01 12 5020814 5020814 C T KCNA1 Silent p.D90D 0.24 TCGA-WS-AB45-01 12 5021295 5021295 A - KCNA1 Frame_Shift_Del p.N252Tfs*3 0.10 TCGA-WS-AB45-01 12 50498456 50498456 C T GPD1 Silent p.G47G 0.17 TCGA-WS-AB45-01 12 51125320 51125320 G T DIP2B Missense_Mutation p.K1270N 0.17 deleterious(0) probably_damaging(0.972) TCGA-WS-AB45-01 12 51319184 51319184 C T METTL7A Silent p.R121R 0.14 TCGA-WS-AB45-01 12 51458329 51458329 G A CSRNP2 Silent p.L278L 0.16 TCGA-WS-AB45-01 12 51693457 51693457 G A BIN2 Silent p.D150D 0.14 TCGA-WS-AB45-01 12 51773420 51773420 C T GALNT6 Missense_Mutation p.R49Q 0.13 tolerated_low_confidence(0.42) benign(0.001) TCGA-WS-AB45-01 12 51773462 51773462 T C GALNT6 Missense_Mutation p.E35G 0.15 tolerated_low_confidence(0.24) benign(0.002) TCGA-WS-AB45-01 12 51844805 51844805 C T SLC4A8 Silent p.H92H 0.14 TCGA-WS-AB45-01 12 52307539 52307539 C T ACVRL1 Silent p.G170G 0.17 TCGA-WS-AB45-01 12 52448931 52448931 C T NR4A1 Silent p.N286N 0.21 TCGA-WS-AB45-01 12 52756717 52756717 C T KRT85 Missense_Mutation p.R333H 0.12 tolerated(0.08) probably_damaging(0.996) TCGA-WS-AB45-01 12 52818389 52818389 G A KRT75 Missense_Mutation p.A523V 0.20 tolerated(0.11) unknown(0) TCGA-WS-AB45-01 12 52910449 52910449 G A KRT5 Missense_Mutation p.R471C 0.14 deleterious(0.03) benign(0.344) TCGA-WS-AB45-01 12 53343318 53343318 C T KRT18 Missense_Mutation p.P121S 0.19 deleterious(0.02) benign(0.438) TCGA-WS-AB45-01 12 53453613 53453613 C T TENC1 Missense_Mutation p.R740W 0.18 deleterious(0) probably_damaging(0.961) TCGA-WS-AB45-01 12 53581457 53581457 G A ZNF740 3'UTR 0.12 TCGA-WS-AB45-01 12 53877737 53877737 C T MAP3K12 Missense_Mutation p.R439H 0.15 deleterious(0.02) benign(0.119) TCGA-WS-AB45-01 12 53895952 53895952 C T TARBP2 Silent p.G69G 0.16 TCGA-WS-AB45-01 12 54333021 54333021 C - HOXC13 Frame_Shift_Del p.T113Pfs*26 0.10 TCGA-WS-AB45-01 12 54448650 54448650 C T HOXC4 Silent p.N152N 0.14 TCGA-WS-AB45-01 12 55725520 55725520 G A OR6C3 Silent p.L12L 0.16 TCGA-WS-AB45-01 12 56075659 56075659 G A METTL7B Missense_Mutation p.A41T 0.10 tolerated(0.6) benign(0.025) TCGA-WS-AB45-01 12 56078969 56078969 G A ITGA7 Missense_Mutation p.T1100M 0.16 deleterious(0.01) possibly_damaging(0.49) TCGA-WS-AB45-01 12 56101410 56101410 A - ITGA7 Frame_Shift_Del p.F19Lfs*20 0.14 TCGA-WS-AB45-01 12 56295835 56295835 C T WIBG Missense_Mutation p.A146T 0.07 deleterious(0.04) benign(0.011) TCGA-WS-AB45-01 12 56330822 56330822 A G DGKA Missense_Mutation p.D29G 0.17 deleterious(0) possibly_damaging(0.812) TCGA-WS-AB45-01 12 56415200 56415201 - C IKZF4 Intron 0.14 TCGA-WS-AB45-01 12 56481857 56481857 C A ERBB3 Missense_Mutation p.P262H 0.23 deleterious(0.03) probably_damaging(0.98) TCGA-WS-AB45-01 12 56641901 56641901 G A ANKRD52 Silent p.R628R 0.18 TCGA-WS-AB45-01 12 57406207 57406207 C T TAC3 Missense_Mutation p.V108I 0.09 tolerated(0.65) benign(0) TCGA-WS-AB45-01 12 57493807 57493807 G A STAT6 Missense_Mutation p.R527C 0.13 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 12 57500331 57500331 T C STAT6 Missense_Mutation p.N171D 0.12 tolerated(0.25) benign(0.077) TCGA-WS-AB45-01 12 57599418 57599418 G A LRP1 Missense_Mutation p.A3850T 0.27 benign(0.242) TCGA-WS-AB45-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.27 TCGA-WS-AB45-01 12 57872896 57872896 G A ARHGAP9 Silent p.P98P 0.18 TCGA-WS-AB45-01 12 57971834 57971834 G A KIF5A Missense_Mutation p.V802I 0.18 tolerated(0.12) probably_damaging(0.991) TCGA-WS-AB45-01 12 5853458 5853458 C T ANO2 Missense_Mutation p.A402T 0.07 tolerated(0.31) benign(0.009) TCGA-WS-AB45-01 12 6091044 6091044 C T VWF Missense_Mutation p.V2399I 0.16 tolerated(0.33) benign(0.417) TCGA-WS-AB45-01 12 6166103 6166103 A G VWF Missense_Mutation p.L622P 0.13 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 12 62104139 62104139 C T FAM19A2 3'UTR 0.10 TCGA-WS-AB45-01 12 6219685 6219685 C G VWF Silent p.L129L 0.17 TCGA-WS-AB45-01 12 6220080 6220080 A G VWF Missense_Mutation p.F92S 0.20 deleterious(0) probably_damaging(0.989) TCGA-WS-AB45-01 12 62931428 62931428 C T MON2 Missense_Mutation p.A687V 0.09 deleterious(0) probably_damaging(0.975) TCGA-WS-AB45-01 12 64377636 64377636 T A SRGAP1 Intron 0.33 TCGA-WS-AB45-01 12 6666610 6666610 G A NOP2 Missense_Mutation p.T696I 0.17 deleterious_low_confidence(0) benign(0.398) TCGA-WS-AB45-01 12 6749364 6749364 G A ACRBP Silent p.Y429Y 0.14 TCGA-WS-AB45-01 12 6804050 6804050 G A PIANP 3'UTR 0.12 TCGA-WS-AB45-01 12 68708855 68708855 C T MDM1 Missense_Mutation p.G458R 0.12 tolerated(0.56) benign(0) TCGA-WS-AB45-01 12 6879760 6879760 C T PTMS 3'UTR 0.15 TCGA-WS-AB45-01 12 69082833 69082833 C T NUP107 Missense_Mutation p.L34F 0.13 tolerated_low_confidence(0.66) benign(0.031) TCGA-WS-AB45-01 12 69260751 69260751 G A CPM Missense_Mutation p.R289C 0.13 tolerated(0.17) benign(0.004) TCGA-WS-AB45-01 12 69783969 69783969 C T YEATS4 Missense_Mutation p.A186V 0.18 tolerated(0.06) benign(0.139) TCGA-WS-AB45-01 12 7069099 7069099 C T PTPN6 Silent p.I457I 0.20 TCGA-WS-AB45-01 12 7188123 7188123 G A C1R Missense_Mutation p.R559C 0.13 deleterious(0.03) possibly_damaging(0.903) TCGA-WS-AB45-01 12 72300882 72300883 - T TBC1D15 Frame_Shift_Ins p.L440Ffs*8 0.10 TCGA-WS-AB45-01 12 75741503 75741503 G A GLIPR1L1 Splice_Site p.X174_splice 0.15 TCGA-WS-AB45-01 12 76425081 76425081 G A PHLDA1 Silent p.G147G 0.11 TCGA-WS-AB45-01 12 76443023 76443023 T C NAP1L1 Missense_Mutation p.E366G 0.20 tolerated(0.14) benign(0.011) TCGA-WS-AB45-01 12 7981304 7981304 C T SLC2A14 Silent p.T247T 0.14 TCGA-WS-AB45-01 12 80658891 80658891 T C OTOGL Missense_Mutation p.C700R 0.15 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 12 8083936 8083936 G A SLC2A3 Missense_Mutation p.P139S 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 12 81239567 81239568 - C LIN7A Frame_Shift_Ins p.V142Gfs*3 0.12 TCGA-WS-AB45-01 12 82796860 82796860 G T METTL25 Silent p.V410V 0.10 TCGA-WS-AB45-01 12 85277562 85277562 C A SLC6A15 Intron 0.13 TCGA-WS-AB45-01 12 88453675 88453675 T - CEP290 Frame_Shift_Del p.E2216Kfs*10 0.17 TCGA-WS-AB45-01 12 90049775 90049775 A G ATP2B1 5'UTR 0.24 TCGA-WS-AB45-01 12 9220316 9220316 A - A2M 3'UTR 0.14 TCGA-WS-AB45-01 12 9243015 9243015 G A A2M Missense_Mutation p.P845S 0.10 tolerated(1) benign(0) TCGA-WS-AB45-01 12 94763724 94763724 C A CCDC41 Missense_Mutation p.R341M 0.16 deleterious(0) benign(0.047) TCGA-WS-AB45-01 12 95228527 95228527 G A MIR492 3'Flank 0.11 TCGA-WS-AB45-01 12 96641158 96641158 G A ELK3 Silent p.S216S 0.19 TCGA-WS-AB45-01 12 99061341 99061341 T C APAF1 Silent p.H471H 0.11 TCGA-WS-AB45-01 12 99065417 99065417 G A APAF1 Silent p.P571P 0.08 TCGA-WS-AB45-01 12 99548112 99548112 G A ANKS1B Silent p.Y827Y 0.08 TCGA-WS-AB45-01 12 9980116 9980117 AC - KLRF1 5'UTR 0.14 TCGA-WS-AB45-01 13 101184318 101184318 A C GGACT 3'UTR 0.14 TCGA-WS-AB45-01 13 101287307 101287307 C T TMTC4 Missense_Mutation p.G449R 0.10 tolerated(0.59) benign(0.005) TCGA-WS-AB45-01 13 101755524 101755524 A - NALCN Frame_Shift_Del p.L1019Wfs*7 0.11 TCGA-WS-AB45-01 13 101763560 101763560 C T NALCN Missense_Mutation p.R737H 0.15 deleterious(0.04) probably_damaging(0.945) TCGA-WS-AB45-01 13 103301333 103301333 G A TPP2 Missense_Mutation p.R902H 0.17 deleterious(0) probably_damaging(0.983) TCGA-WS-AB45-01 13 103527778 103527778 C A ERCC5 Missense_Mutation p.A1029E 0.16 tolerated(0.31) benign(0.004) TCGA-WS-AB45-01 13 103698410 103698411 - A SLC10A2 3'UTR 0.17 TCGA-WS-AB45-01 13 107145495 107145495 C T EFNB2 Missense_Mutation p.V299I 0.26 tolerated(0.46) possibly_damaging(0.475) TCGA-WS-AB45-01 13 109518574 109518574 C T MYO16 Missense_Mutation p.P448L 0.12 deleterious(0) probably_damaging(0.994) TCGA-WS-AB45-01 13 113200144 113200144 C T TUBGCP3 Missense_Mutation p.A402T 0.11 tolerated(0.11) benign(0.017) TCGA-WS-AB45-01 13 113481084 113481084 C T ATP11A Missense_Mutation p.T367M 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 13 113516822 113516822 A G ATP11A Missense_Mutation p.D975G 0.12 deleterious(0.02) benign(0.044) TCGA-WS-AB45-01 13 114079397 114079397 G A ADPRHL1 Silent p.P248P 0.17 TCGA-WS-AB45-01 13 114193729 114193729 G A TMCO3 Missense_Mutation p.V533I 0.14 tolerated(1) benign(0.004) TCGA-WS-AB45-01 13 114240108 114240108 T C TFDP1 5'UTR 0.12 TCGA-WS-AB45-01 13 114523901 114523901 G A GAS6 Missense_Mutation p.A658V 0.15 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 13 115027421 115027424 TAAG - CDC16 Splice_Site p.X459_splice 0.09 TCGA-WS-AB45-01 13 20716208 20716208 G A GJA3 Missense_Mutation p.P407L 0.19 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 13 21361721 21361721 A - XPO4 Frame_Shift_Del p.C1022Afs*8 0.16 TCGA-WS-AB45-01 13 21417087 21417087 C T XPO4 Missense_Mutation p.R225H 0.09 tolerated(0.24) benign(0.177) TCGA-WS-AB45-01 13 21753209 21753209 A - MRP63 3'UTR 0.11 TCGA-WS-AB45-01 13 21950583 21950583 T - ZDHHC20 3'UTR 0.17 TCGA-WS-AB45-01 13 23911025 23911025 A G SACS Silent p.N2330N 0.14 TCGA-WS-AB45-01 13 23912283 23912283 G A SACS Missense_Mutation p.T1911M 0.07 benign(0.166) TCGA-WS-AB45-01 13 23915338 23915338 T C SACS Missense_Mutation p.T893A 0.08 benign(0) TCGA-WS-AB45-01 13 24247702 24247702 G A TNFRSF19 3'Flank 0.10 TCGA-WS-AB45-01 13 25283880 25283880 T G ATP12A Missense_Mutation p.F899V 0.07 deleterious(0) probably_damaging(0.972) TCGA-WS-AB45-01 13 25338472 25338472 G A RNF17 Splice_Site p.X44_splice 0.12 TCGA-WS-AB45-01 13 25376685 25376685 C T RNF17 Missense_Mutation p.A642V 0.11 deleterious(0.01) benign(0.049) TCGA-WS-AB45-01 13 25825897 25825897 A G MTMR6 Missense_Mutation p.Y499H 0.12 deleterious(0) probably_damaging(0.989) TCGA-WS-AB45-01 13 26273415 26273415 G A ATP8A2 Silent p.A772A 0.14 TCGA-WS-AB45-01 13 29286831 29286831 A G SLC46A3 Missense_Mutation p.L349P 0.11 tolerated(0.06) benign(0.018) TCGA-WS-AB45-01 13 32972893 32972893 A - BRCA2 Frame_Shift_Del p.K3416Nfs*11 0.11 TCGA-WS-AB45-01 13 33635160 33635160 G A KL Silent p.P648P 0.17 TCGA-WS-AB45-01 13 35733881 35733881 C T NBEA Silent p.T1191T 0.13 TCGA-WS-AB45-01 13 35756586 35756586 A G NBEA Silent p.E1584E 0.16 TCGA-WS-AB45-01 13 36348616 36348616 A - DCLK1 3'UTR 0.12 TCGA-WS-AB45-01 13 39450195 39450195 A G FREM2 Missense_Mutation p.H2773R 0.12 tolerated(0.13) probably_damaging(0.994) TCGA-WS-AB45-01 13 39541073 39541073 C T STOML3 Silent p.T255T 0.20 TCGA-WS-AB45-01 13 42407603 42407603 C T VWA8 Missense_Mutation p.R497Q 0.10 tolerated(0.06) benign(0.233) TCGA-WS-AB45-01 13 42882725 42882725 T - AKAP11 Frame_Shift_Del p.H1753Ifs*3 0.09 TCGA-WS-AB45-01 13 46066297 46066297 C T COG3 Missense_Mutation p.R367C 0.11 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 13 46115660 46115660 G A FAM194B Silent p.A676A 0.12 TCGA-WS-AB45-01 13 48562732 48562732 G A SUCLA2 Nonsense_Mutation p.R160* 0.10 TCGA-WS-AB45-01 13 50205562 50205562 G A ARL11 3'UTR 0.14 TCGA-WS-AB45-01 13 50206403 50206403 A - ARL11 3'UTR 0.09 TCGA-WS-AB45-01 13 51825704 51825704 C T FAM124A Silent p.N103N 0.18 TCGA-WS-AB45-01 13 52604542 52604542 G A UTP14C Silent p.Q534Q 0.15 TCGA-WS-AB45-01 13 52976798 52976798 T - THSD1 5'UTR 0.12 TCGA-WS-AB45-01 13 53216586 53216586 C T HNRNPA1L2 5'UTR 0.17 TCGA-WS-AB45-01 13 77459607 77459607 G A KCTD12 Missense_Mutation p.A226V 0.12 deleterious(0.01) benign(0.245) TCGA-WS-AB45-01 13 78178491 78178491 A - SCEL Frame_Shift_Del p.D369Tfs*28 0.08 TCGA-WS-AB45-01 13 78477735 78477735 G A EDNRB Missense_Mutation p.A254V 0.15 tolerated(0.15) benign(0.067) TCGA-WS-AB45-01 13 84453567 84453567 G T SLITRK1 Missense_Mutation p.H692Q 0.15 deleterious(0) benign(0.402) TCGA-WS-AB45-01 13 92101156 92101156 G A GPC5 Missense_Mutation p.R102Q 0.11 tolerated(0.57) benign(0.269) TCGA-WS-AB45-01 13 95363434 95363434 A G SOX21 3'UTR 0.11 TCGA-WS-AB45-01 13 96453911 96453911 A T UGGT2 3'UTR 0.17 TCGA-WS-AB45-01 13 97999281 97999281 C T MBNL2 Missense_Mutation p.A255V 0.12 deleterious(0.03) possibly_damaging(0.651) TCGA-WS-AB45-01 13 98828664 98828664 C T RNF113B Missense_Mutation p.C276Y 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 13 99092387 99092387 G A FARP1 Missense_Mutation p.E843K 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-WS-AB45-01 13 99100712 99100712 C T FARP1 3'UTR 0.11 TCGA-WS-AB45-01 14 100793707 100793707 C T SLC25A47 Silent p.R109R 0.35 TCGA-WS-AB45-01 14 101200555 101200555 C - DLK1 Frame_Shift_Del p.P160Lfs*50 0.16 TCGA-WS-AB45-01 14 102494139 102494139 C T DYNC1H1 Missense_Mutation p.R3078W 0.11 probably_damaging(0.999) TCGA-WS-AB45-01 14 103574790 103574790 G A EXOC3L4 Missense_Mutation p.E638K 0.15 deleterious(0) probably_damaging(0.97) TCGA-WS-AB45-01 14 103986518 103986518 C T CKB Missense_Mutation p.G303D 0.24 tolerated(0.06) benign(0.105) TCGA-WS-AB45-01 14 104165066 104165066 G A XRCC3 3'UTR 0.14 TCGA-WS-AB45-01 14 104201512 104201512 G T PPP1R13B Silent p.P1084P 0.14 TCGA-WS-AB45-01 14 104618692 104618692 C T KIF26A Missense_Mutation p.A210V 0.16 deleterious(0.01) possibly_damaging(0.746) TCGA-WS-AB45-01 14 105179569 105179569 C T INF2 Missense_Mutation p.A934V 0.17 tolerated(0.18) unknown(0) TCGA-WS-AB45-01 14 105208236 105208236 C T ADSSL1 Missense_Mutation p.T325M 0.24 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 14 105408087 105408087 G A AHNAK2 Silent p.D4567D 0.18 TCGA-WS-AB45-01 14 105408163 105408163 A G AHNAK2 Missense_Mutation p.L4542P 0.17 benign(0.437) TCGA-WS-AB45-01 14 105414256 105414256 G A AHNAK2 Missense_Mutation p.P2511L 0.14 benign(0.28) TCGA-WS-AB45-01 14 105614492 105614492 C T JAG2 Missense_Mutation p.A737T 0.22 tolerated(0.41) possibly_damaging(0.691) TCGA-WS-AB45-01 14 105692429 105692429 C - BRF1 Frame_Shift_Del p.G342Afs*36 0.18 TCGA-WS-AB45-01 14 105718855 105718855 G A BRF1 Missense_Mutation p.A178V 0.11 tolerated(0.46) benign(0.014) TCGA-WS-AB45-01 14 105814903 105814903 G A PACS2 Missense_Mutation p.A65T 0.08 deleterious(0) possibly_damaging(0.745) TCGA-WS-AB45-01 14 105958628 105958628 C T C14orf80 Silent p.D137D 0.17 TCGA-WS-AB45-01 14 106053338 106053338 G A IGHA2 Missense_Mutation p.A320V 0.09 deleterious(0.01) possibly_damaging(0.813) TCGA-WS-AB45-01 14 106622015 106622015 G A IGHV3-16 Missense_Mutation p.T77M 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.52) TCGA-WS-AB45-01 14 20944590 20944590 C T PNP Nonsense_Mutation p.R234* 0.08 TCGA-WS-AB45-01 14 21168439 21168439 T - RNASE4 3'UTR 0.11 TCGA-WS-AB45-01 14 21469353 21469353 C T SLC39A2 Missense_Mutation p.A182V 0.17 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 14 21526177 21526177 T C RNASE8 Silent p.H42H 0.13 TCGA-WS-AB45-01 14 21548858 21548858 G A ARHGEF40 Missense_Mutation p.A805T 0.15 tolerated(0.15) benign(0.009) TCGA-WS-AB45-01 14 21550248 21550248 C - ARHGEF40 Frame_Shift_Del p.R1076Gfs*18 0.13 TCGA-WS-AB45-01 14 21561348 21561348 G A ZNF219 Silent p.S36S 0.11 TCGA-WS-AB45-01 14 21569558 21569558 A G TMEM253 Missense_Mutation p.K19R 0.19 tolerated(0.41) possibly_damaging(0.765) TCGA-WS-AB45-01 14 21868213 21868213 G A CHD8 Nonsense_Mutation p.R1582* 0.19 TCGA-WS-AB45-01 14 21968806 21968806 G A METTL3 Missense_Mutation p.R379C 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 14 21990669 21990669 G A SALL2 3'UTR 0.17 TCGA-WS-AB45-01 14 23450707 23450707 C - AJUBA Frame_Shift_Del p.A257Rfs*8 0.11 TCGA-WS-AB45-01 14 23885404 23885404 G A MYH7 Missense_Mutation p.R1588C 0.13 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 14 23889335 23889335 G A MYH7 Missense_Mutation p.R1149W 0.19 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 14 23891389 23891389 T - MYH7 Frame_Shift_Del p.D1084Tfs*4 0.22 TCGA-WS-AB45-01 14 24026091 24026091 C - THTPA Frame_Shift_Del p.P43Lfs*3 0.14 TCGA-WS-AB45-01 14 24534243 24534243 C T LRRC16B Missense_Mutation p.R1053W 0.22 deleterious(0) possibly_damaging(0.531) TCGA-WS-AB45-01 14 24663940 24663940 G A TM9SF1 Missense_Mutation p.R96C 0.12 deleterious(0.01) possibly_damaging(0.791) TCGA-WS-AB45-01 14 24738849 24738849 G - RABGGTA Frame_Shift_Del p.P160Lfs*5 0.16 TCGA-WS-AB45-01 14 24839595 24839595 C T NFATC4 Missense_Mutation p.R394W 0.17 deleterious(0.04) probably_damaging(1) TCGA-WS-AB45-01 14 34419666 34419666 A G EGLN3 Missense_Mutation p.I98T 0.13 deleterious(0) benign(0.006) TCGA-WS-AB45-01 14 35522493 35522493 G A FAM177A1 Missense_Mutation p.E59K 0.17 tolerated(0.06) benign(0.034) TCGA-WS-AB45-01 14 36988534 36988534 G A NKX2-1 Missense_Mutation p.P40L 0.15 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 14 38725400 38725400 C A CLEC14A 5'UTR 0.13 TCGA-WS-AB45-01 14 45584120 45584121 - A PRPF39 3'UTR 0.15 TCGA-WS-AB45-01 14 45673108 45673108 C T MIS18BP1 3'UTR 0.23 TCGA-WS-AB45-01 14 50088327 50088327 C - MGAT2 Frame_Shift_Del p.R116Gfs*48 0.11 TCGA-WS-AB45-01 14 50089716 50089716 C T MGAT2 3'UTR 0.11 TCGA-WS-AB45-01 14 50807868 50807868 G A CDKL1 Silent p.Y180Y 0.11 TCGA-WS-AB45-01 14 51026996 51026996 C T ATL1 Missense_Mutation p.R5C 0.14 deleterious_low_confidence(0) benign(0.183) TCGA-WS-AB45-01 14 51223890 51223890 C A NIN Missense_Mutation p.E1286D 0.16 tolerated(0.27) possibly_damaging(0.561) TCGA-WS-AB45-01 14 53223316 53223317 - T STYX Frame_Shift_Ins p.M101Yfs*3 0.14 TCGA-WS-AB45-01 14 53521318 53521318 C A DDHD1 Nonsense_Mutation p.G759* 0.10 TCGA-WS-AB45-01 14 53525230 53525230 G A DDHD1 Missense_Mutation p.R653W 0.15 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 14 56746482 56746482 C T PELI2 Missense_Mutation p.T99M 0.17 deleterious(0) possibly_damaging(0.748) TCGA-WS-AB45-01 14 62233730 62233730 C T SNAPC1 Nonsense_Mutation p.Q89* 0.20 TCGA-WS-AB45-01 14 62242911 62242911 T - SNAPC1 Frame_Shift_Del p.F213Lfs*7 0.13 TCGA-WS-AB45-01 14 64444693 64444693 T C SYNE2 Missense_Mutation p.L455S 0.17 probably_damaging(0.999) TCGA-WS-AB45-01 14 64699953 64699953 C T ESR2 Missense_Mutation p.V499M 0.17 tolerated(0.2) benign(0.004) TCGA-WS-AB45-01 14 64935816 64935816 C T AKAP5 Missense_Mutation p.T235M 0.18 tolerated(0.16) benign(0.007) TCGA-WS-AB45-01 14 64954082 64954082 G A ZBTB25 Silent p.S289S 0.13 TCGA-WS-AB45-01 14 65007975 65007975 G - HSPA2 Frame_Shift_Del p.G138Afs*8 0.13 TCGA-WS-AB45-01 14 65009168 65009168 C T HSPA2 Missense_Mutation p.A534V 0.15 tolerated_low_confidence(0.18) benign(0.005) TCGA-WS-AB45-01 14 65009578 65009578 G A HSPA2 3'UTR 0.18 TCGA-WS-AB45-01 14 65032103 65032105 GAT - PPP1R36 In_Frame_Del p.D101del 0.13 TCGA-WS-AB45-01 14 65216092 65216092 C T SPTB Missense_Mutation p.G2307S 0.16 tolerated(0.93) benign(0.006) TCGA-WS-AB45-01 14 65406294 65406294 T A GPX2 Missense_Mutation p.E162V 0.18 deleterious(0) benign(0.042) TCGA-WS-AB45-01 14 67746178 67746178 C T MPP5 Silent p.T97T 0.11 TCGA-WS-AB45-01 14 68114846 68114846 G A ARG2 Missense_Mutation p.G269R 0.21 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 14 68217746 68217746 C T ZFYVE26 Intron 0.16 TCGA-WS-AB45-01 14 68249797 68249797 G A ZFYVE26 Missense_Mutation p.R1358C 0.15 tolerated(0.13) benign(0.235) TCGA-WS-AB45-01 14 68265003 68265003 C A ZFYVE26 Missense_Mutation p.G659V 0.07 tolerated(0.16) benign(0.002) TCGA-WS-AB45-01 14 69341708 69341708 G A ACTN1 Silent p.R871R 0.14 TCGA-WS-AB45-01 14 69369191 69369191 T C ACTN1 Intron 0.14 TCGA-WS-AB45-01 14 69558538 69558538 G A DCAF5 Silent p.N244N 0.14 TCGA-WS-AB45-01 14 69584963 69584963 T G DCAF5 Missense_Mutation p.D143A 0.12 tolerated(0.09) possibly_damaging(0.655) TCGA-WS-AB45-01 14 70243023 70243023 C T SLC10A1 Silent p.E342E 0.14 TCGA-WS-AB45-01 14 71199678 71199678 C T MAP3K9 Missense_Mutation p.R817H 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 14 72138247 72138247 A T SIPA1L1 Missense_Mutation p.E889D 0.15 tolerated(0.82) benign(0.006) TCGA-WS-AB45-01 14 73029246 73029246 G A RGS6 3'Flank 0.10 TCGA-WS-AB45-01 14 73576106 73576106 A G RBM25 Missense_Mutation p.E533G 0.15 benign(0.403) TCGA-WS-AB45-01 14 73763961 73763961 C T NUMB Nonsense_Mutation p.W89* 0.06 TCGA-WS-AB45-01 14 74185994 74185994 G A ELMSAN1 3'UTR 0.11 TCGA-WS-AB45-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.10 TCGA-WS-AB45-01 14 74766253 74766253 T C ABCD4 Missense_Mutation p.T95A 0.13 tolerated(0.41) benign(0.016) TCGA-WS-AB45-01 14 75017841 75017841 G A LTBP2 Missense_Mutation p.R538W 0.14 deleterious(0) possibly_damaging(0.708) TCGA-WS-AB45-01 14 75248402 75248402 T C YLPM1 Silent p.P552P 0.12 TCGA-WS-AB45-01 14 75360126 75360126 G A DLST Missense_Mutation p.R224Q 0.15 deleterious(0.02) possibly_damaging(0.645) TCGA-WS-AB45-01 14 76245936 76245936 G T TTLL5 Missense_Mutation p.E802D 0.15 tolerated(0.09) benign(0.165) TCGA-WS-AB45-01 14 77709335 77709335 C T TMEM63C Missense_Mutation p.T426M 0.11 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 14 88962792 88962792 C T PTPN21 Silent p.A299A 0.14 TCGA-WS-AB45-01 14 89220875 89220875 G A EML5 Missense_Mutation p.A113V 0.15 deleterious(0.05) benign(0.314) TCGA-WS-AB45-01 14 91738996 91738996 G A CCDC88C Silent p.T2020T 0.14 TCGA-WS-AB45-01 14 92053573 92053573 A G CATSPERB Silent p.T1035T 0.10 TCGA-WS-AB45-01 14 92471291 92471291 T - TRIP11 Frame_Shift_Del p.K1010Sfs*12 0.14 TCGA-WS-AB45-01 14 93118563 93118563 G A RIN3 Missense_Mutation p.R390H 0.25 deleterious(0.05) possibly_damaging(0.479) TCGA-WS-AB45-01 14 93118941 93118941 A C RIN3 Missense_Mutation p.Q516P 0.14 tolerated(0.31) benign(0.002) TCGA-WS-AB45-01 14 93154311 93154311 C T RIN3 Missense_Mutation p.A891V 0.14 tolerated(0.06) benign(0.381) TCGA-WS-AB45-01 14 93277935 93277935 C T GOLGA5 Missense_Mutation p.R386C 0.15 deleterious(0.02) probably_damaging(0.939) TCGA-WS-AB45-01 14 93653085 93653085 G A TMEM251 3'UTR 0.11 TCGA-WS-AB45-01 14 93708726 93708726 C A BTBD7 Missense_Mutation p.G1098C 0.18 deleterious_low_confidence(0) benign(0.417) TCGA-WS-AB45-01 14 94173303 94173303 A - UNC79 3'UTR 0.11 TCGA-WS-AB45-01 14 95033540 95033540 C T SERPINA4 Missense_Mutation p.P295S 0.08 tolerated(0.1) probably_damaging(0.938) TCGA-WS-AB45-01 14 95080937 95080937 C T SERPINA3 Silent p.N53N 0.22 TCGA-WS-AB45-01 14 95569775 95569775 C T DICER1 Missense_Mutation p.D1320N 0.11 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 14 95669414 95669414 C T CLMN Missense_Mutation p.E758K 0.09 deleterious(0.02) benign(0.013) TCGA-WS-AB45-01 14 95884166 95884166 G T SYNE3 Silent p.T975T 0.12 TCGA-WS-AB45-01 14 95932430 95932430 G A SYNE3 Silent p.H155H 0.14 TCGA-WS-AB45-01 14 96937944 96937944 G A AK7 Splice_Site p.X496_splice 0.10 TCGA-WS-AB45-01 14 96993782 96993782 C T PAPOLA Missense_Mutation p.A116V 0.13 deleterious(0.04) benign(0.184) TCGA-WS-AB45-01 15 100996147 100996147 T C CERS3 Missense_Mutation p.Y317C 0.10 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 15 23890893 23890894 - G MAGEL2 Frame_Shift_Ins p.Q63Pfs*47 0.14 TCGA-WS-AB45-01 15 25925385 25925385 G A ATP10A Missense_Mutation p.A1250V 0.13 deleterious(0.04) benign(0.009) TCGA-WS-AB45-01 15 28491959 28491959 G A HERC2 Missense_Mutation p.A1107V 0.17 possibly_damaging(0.541) TCGA-WS-AB45-01 15 31339406 31339406 C T TRPM1 Missense_Mutation p.V575M 0.18 deleterious(0) possibly_damaging(0.848) TCGA-WS-AB45-01 15 31664429 31664429 G A KLF13 Missense_Mutation p.R265Q 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-WS-AB45-01 15 32916445 32916446 - T ARHGAP11A Frame_Shift_Ins p.R126* 0.08 TCGA-WS-AB45-01 15 33905515 33905515 T - RYR3 Frame_Shift_Del p.F766Lfs*13 0.11 TCGA-WS-AB45-01 15 34140603 34140603 C T RYR3 Missense_Mutation p.R4537C 0.11 probably_damaging(0.959) TCGA-WS-AB45-01 15 34395011 34395011 C T PGBD4 Silent p.G93G 0.10 TCGA-WS-AB45-01 15 34396143 34396143 T C PGBD4 Missense_Mutation p.F471L 0.23 tolerated(0.16) benign(0.036) TCGA-WS-AB45-01 15 34642949 34642949 T C NUTM1 Missense_Mutation p.L257P 0.18 deleterious(0) possibly_damaging(0.9) TCGA-WS-AB45-01 15 34648377 34648377 C - NUTM1 Frame_Shift_Del p.M697Wfs*28 0.14 TCGA-WS-AB45-01 15 34651433 34651434 - G LPCAT4 Frame_Shift_Ins p.H491Tfs*75 0.12 TCGA-WS-AB45-01 15 40018795 40018795 T C FSIP1 Missense_Mutation p.N349D 0.08 tolerated(1) benign(0.002) TCGA-WS-AB45-01 15 40599857 40599857 G T PLCB2 Missense_Mutation p.P6H 0.22 tolerated_low_confidence(0.07) unknown(0) TCGA-WS-AB45-01 15 40764585 40764585 C T CHST14 3'UTR 0.14 TCGA-WS-AB45-01 15 41657753 41657753 C T NUSAP1 Missense_Mutation p.R272C 0.16 tolerated(0.07) benign(0.048) TCGA-WS-AB45-01 15 42042612 42042612 T - MGA Frame_Shift_Del p.Q2271Rfs*64 0.09 TCGA-WS-AB45-01 15 42162747 42162747 G A SPTBN5 Missense_Mutation p.S1820L 0.15 benign(0.029) TCGA-WS-AB45-01 15 42178014 42178014 T CC SPTBN5 Frame_Shift_Ins p.E480Gfs*9 0.22 TCGA-WS-AB45-01 15 42193323 42193323 G A EHD4 Silent p.I382I 0.10 TCGA-WS-AB45-01 15 42211517 42211517 C T EHD4 Missense_Mutation p.R272Q 0.10 tolerated(0.19) benign(0.105) TCGA-WS-AB45-01 15 42519070 42519070 C T TMEM87A Missense_Mutation p.R446H 0.07 tolerated(0.25) probably_damaging(0.996) TCGA-WS-AB45-01 15 42652106 42652106 G - CAPN3 Frame_Shift_Del p.G36Vfs*21 0.08 TCGA-WS-AB45-01 15 43299348 43299348 A G UBR1 Missense_Mutation p.V1115A 0.12 deleterious(0) possibly_damaging(0.751) TCGA-WS-AB45-01 15 43500968 43500968 G A EPB42 Nonsense_Mutation p.R310* 0.16 TCGA-WS-AB45-01 15 43712525 43712525 C T TP53BP1 Silent p.S1553S 0.16 TCGA-WS-AB45-01 15 43724726 43724726 A G TP53BP1 Missense_Mutation p.I1114T 0.10 tolerated(0.7) benign(0.001) TCGA-WS-AB45-01 15 43815140 43815140 G A MAP1A Missense_Mutation p.R490H 0.12 probably_damaging(0.921) TCGA-WS-AB45-01 15 43822292 43822292 C T MAP1A Missense_Mutation p.T2761M 0.16 probably_damaging(0.999) TCGA-WS-AB45-01 15 43891071 43891071 G A CKMT1B Missense_Mutation p.R353H 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-WS-AB45-01 15 43910108 43910108 G A STRC Silent p.L171L 0.08 TCGA-WS-AB45-01 15 43991253 43991253 G A CKMT1A Missense_Mutation p.R407H 0.08 deleterious(0.02) benign(0.116) TCGA-WS-AB45-01 15 44038897 44038897 G A PDIA3 Missense_Mutation p.A54T 0.07 deleterious(0) probably_damaging(0.978) TCGA-WS-AB45-01 15 44087279 44087279 G - SERINC4 Frame_Shift_Del p.T493Pfs*9 0.14 TCGA-WS-AB45-01 15 44858195 44858195 G A SPG11 Nonsense_Mutation p.R2286* 0.11 TCGA-WS-AB45-01 15 45406871 45406871 C T DUOXA2 Missense_Mutation p.P23L 0.15 tolerated(0.35) possibly_damaging(0.826) TCGA-WS-AB45-01 15 45656095 45656095 T C GATM Intron 0.21 TCGA-WS-AB45-01 15 45725223 45725223 C T C15orf48 3'UTR 0.15 TCGA-WS-AB45-01 15 48522601 48522601 G A SLC12A1 Silent p.S292S 0.09 TCGA-WS-AB45-01 15 50789375 50789375 A - USP8 Frame_Shift_Del p.K997Rfs*2 0.10 TCGA-WS-AB45-01 15 50838743 50838743 C T USP50 5'UTR 0.11 TCGA-WS-AB45-01 15 51503000 51503000 C A CYP19A1 3'UTR 0.15 TCGA-WS-AB45-01 15 51766732 51766732 A G DMXL2 Missense_Mutation p.L2341P 0.17 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 15 51780284 51780284 A - DMXL2 Frame_Shift_Del p.F1695Sfs*15 0.16 TCGA-WS-AB45-01 15 51828673 51828673 G T DMXL2 Silent p.S668S 0.19 TCGA-WS-AB45-01 15 52017198 52017198 C T LYSMD2 Missense_Mutation p.D132N 0.13 deleterious(0.01) possibly_damaging(0.722) TCGA-WS-AB45-01 15 52416731 52416731 G T GNB5 Missense_Mutation p.T372N 0.06 deleterious(0) probably_damaging(0.965) TCGA-WS-AB45-01 15 53081433 53081433 C A ONECUT1 Missense_Mutation p.G217C 0.19 deleterious(0) probably_damaging(0.99) TCGA-WS-AB45-01 15 55611484 55611484 G - PIGB Frame_Shift_Del p.G14Afs*19 0.11 TCGA-WS-AB45-01 15 55657486 55657486 C T CCPG1 Missense_Mutation p.R243H 0.11 tolerated(0.1) benign(0.112) TCGA-WS-AB45-01 15 55916655 55916655 C T PRTG Missense_Mutation p.R993H 0.11 tolerated(0.47) benign(0) TCGA-WS-AB45-01 15 58476517 58476517 A G AQP9 3'UTR 0.20 TCGA-WS-AB45-01 15 59064388 59064388 C T FAM63B Missense_Mutation p.P265L 0.20 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 15 62948248 62948248 C T TLN2 Missense_Mutation p.S208L 0.16 deleterious(0.03) possibly_damaging(0.692) TCGA-WS-AB45-01 15 64506317 64506317 G A CSNK1G1 Nonsense_Mutation p.R151* 0.11 TCGA-WS-AB45-01 15 65944015 65944015 G T SLC24A1 Missense_Mutation p.R934M 0.14 possibly_damaging(0.876) TCGA-WS-AB45-01 15 65994675 65994675 T - DENND4A Frame_Shift_Del p.M800Cfs*75 0.13 TCGA-WS-AB45-01 15 66633520 66633520 T G TIPIN Missense_Mutation p.K217T 0.17 deleterious(0) probably_damaging(0.963) TCGA-WS-AB45-01 15 66856265 66856265 C T LCTL Silent p.L118L 0.17 TCGA-WS-AB45-01 15 68117984 68117984 G - SKOR1 Intron 0.08 TCGA-WS-AB45-01 15 71124694 71124694 G A LARP6 Silent p.G391G 0.13 TCGA-WS-AB45-01 15 72050374 72050374 G A THSD4 Missense_Mutation p.C850Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 15 72495472 72495472 G A PKM Nonsense_Mutation p.R400* 0.09 TCGA-WS-AB45-01 15 72534999 72534999 G T PARP6 Missense_Mutation p.L535M 0.07 tolerated(0.11) probably_damaging(0.98) TCGA-WS-AB45-01 15 73617786 73617786 C T HCN4 Splice_Site p.X531_splice 0.06 TCGA-WS-AB45-01 15 74744703 74744703 C A UBL7 Silent p.V107V 0.11 TCGA-WS-AB45-01 15 74911640 74911640 C T CLK3 Nonsense_Mutation p.R183* 0.12 TCGA-WS-AB45-01 15 75042314 75042314 C T CYP1A2 Missense_Mutation p.R79C 0.15 deleterious(0.01) benign(0.049) TCGA-WS-AB45-01 15 75968877 75968877 G A CSPG4 Missense_Mutation p.R1995W 0.15 deleterious(0) possibly_damaging(0.462) TCGA-WS-AB45-01 15 75981985 75981985 C T CSPG4 Missense_Mutation p.R474Q 0.11 tolerated(0.27) benign(0.004) TCGA-WS-AB45-01 15 76452444 76452444 G A C15orf27 Missense_Mutation p.A131T 0.21 tolerated(0.06) possibly_damaging(0.734) TCGA-WS-AB45-01 15 76496714 76496714 A T C15orf27 3'UTR 0.24 TCGA-WS-AB45-01 15 76958022 76958026 TGGCT GGC SCAPER Frame_Shift_Del p.A872Pfs*12 0.11 TCGA-WS-AB45-01 15 77328176 77328176 G A PSTPIP1 Missense_Mutation p.R340Q 0.08 tolerated(0.29) benign(0.002) TCGA-WS-AB45-01 15 77407024 77407024 C T PEAK1 Missense_Mutation p.R1572Q 0.22 tolerated(0.09) probably_damaging(0.945) TCGA-WS-AB45-01 15 78632762 78632762 A G CRABP1 5'UTR 0.16 TCGA-WS-AB45-01 15 78770718 78770720 AGG - IREB2 In_Frame_Del p.G426del 0.13 TCGA-WS-AB45-01 15 78782854 78782854 T - IREB2 Frame_Shift_Del p.F724Lfs*48 0.10 TCGA-WS-AB45-01 15 78882366 78882366 T - CHRNA5 Frame_Shift_Del p.F213Lfs*9 0.11 TCGA-WS-AB45-01 15 79054876 79054876 C T ADAMTS7 Missense_Mutation p.R1591Q 0.14 deleterious(0.05) probably_damaging(0.953) TCGA-WS-AB45-01 15 79589601 79589602 AC - ANKRD34C 3'UTR 0.08 TCGA-WS-AB45-01 15 82335676 82335676 C T MEX3B Missense_Mutation p.R512H 0.13 tolerated(0.11) probably_damaging(0.98) TCGA-WS-AB45-01 15 83932513 83932513 G A BNC1 Missense_Mutation p.T497M 0.15 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 15 89402614 89402614 G A ACAN Silent p.P2266P 0.15 TCGA-WS-AB45-01 15 89864063 89864063 C T POLG Missense_Mutation p.R972Q 0.17 tolerated(0.07) probably_damaging(1) TCGA-WS-AB45-01 15 89873428 89873428 G - POLG Frame_Shift_Del p.L247Wfs*19 0.21 TCGA-WS-AB45-01 15 90892497 90892497 G A GABARAPL3 5'UTR 0.19 TCGA-WS-AB45-01 15 91346807 91346807 C T BLM Nonsense_Mutation p.R1139* 0.14 TCGA-WS-AB45-01 15 91436520 91436520 G - FES Splice_Site p.X642_splice 0.18 TCGA-WS-AB45-01 15 91448823 91448823 G A MAN2A2 Silent p.S135S 0.15 TCGA-WS-AB45-01 15 91517382 91517382 G A PRC1 Missense_Mutation p.P482L 0.08 deleterious(0.02) possibly_damaging(0.675) TCGA-WS-AB45-01 15 91548157 91548157 G A VPS33B Missense_Mutation p.S392L 0.13 tolerated(0.07) benign(0.424) TCGA-WS-AB45-01 15 93595369 93595369 C T RGMA Missense_Mutation p.G175R 0.08 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 16 1034981 1034981 G A SOX8 Silent p.A312A 0.14 TCGA-WS-AB45-01 16 10534291 10534291 A G ATF7IP2 Missense_Mutation p.N389S 0.14 tolerated(0.18) benign(0.029) TCGA-WS-AB45-01 16 10971106 10971106 G A CIITA 5'UTR 0.29 TCGA-WS-AB45-01 16 11035883 11035883 C T DEXI 5'UTR 0.22 TCGA-WS-AB45-01 16 11876261 11876262 - A ZC3H7A 5'UTR 0.13 TCGA-WS-AB45-01 16 1203725 1203725 G A CACNA1H 5'UTR 0.10 TCGA-WS-AB45-01 16 1268405 1268405 G A CACNA1H Missense_Mutation p.E1881K 0.16 deleterious(0.04) benign(0.443) TCGA-WS-AB45-01 16 135615 135615 C T MPG Missense_Mutation p.R246C 0.12 tolerated(0.09) benign(0.009) TCGA-WS-AB45-01 16 14026441 14026441 T - ERCC4 Intron 0.12 TCGA-WS-AB45-01 16 14042043 14042043 C T ERCC4 Missense_Mutation p.R864C 0.17 deleterious(0.04) benign(0.005) TCGA-WS-AB45-01 16 14341010 14341010 C T MKL2 Silent p.H631H 0.12 TCGA-WS-AB45-01 16 14351966 14351966 C T MKL2 Silent p.N854N 0.16 TCGA-WS-AB45-01 16 1484518 1484518 G A CCDC154 Missense_Mutation p.A639V 0.12 tolerated(0.31) benign(0.014) TCGA-WS-AB45-01 16 1497541 1497541 A G CLCN7 Missense_Mutation p.L701P 0.12 tolerated(0.16) benign(0.004) TCGA-WS-AB45-01 16 1545605 1545605 G A TELO2 Silent p.A198A 0.25 TCGA-WS-AB45-01 16 1555562 1555562 T A TELO2 Missense_Mutation p.V665E 0.17 deleterious(0) probably_damaging(0.99) TCGA-WS-AB45-01 16 15609226 15609226 G A C16orf45 Missense_Mutation p.M57I 0.12 deleterious(0.03) probably_damaging(0.95) TCGA-WS-AB45-01 16 15788045 15788046 - C NDE1 Frame_Shift_Ins p.L245Pfs*70 0.12 TCGA-WS-AB45-01 16 15814720 15814722 CTC - MYH11 In_Frame_Del p.E1596del 0.16 TCGA-WS-AB45-01 16 16196490 16196490 C T ABCC1 Missense_Mutation p.T884M 0.15 tolerated(0.14) benign(0.004) TCGA-WS-AB45-01 16 16235141 16235141 C A ABCC1 3'UTR 0.20 TCGA-WS-AB45-01 16 16425577 16425577 G A NPIPA7 5'Flank 0.08 TCGA-WS-AB45-01 16 1817669 1817669 C T MAPK8IP3 Silent p.L1113L 0.17 TCGA-WS-AB45-01 16 1818885 1818885 C T MAPK8IP3 3'UTR 0.21 TCGA-WS-AB45-01 16 1841874 1841874 A G IGFALS Missense_Mutation p.L220P 0.15 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 16 18903639 18903639 C T SMG1 Silent p.S150S 0.15 TCGA-WS-AB45-01 16 1912058 1912059 - A MEIOB Frame_Shift_Ins p.V63Cfs*9 0.14 TCGA-WS-AB45-01 16 19184745 19184745 G A SYT17 Intron 0.17 TCGA-WS-AB45-01 16 19483450 19483450 C T TMC5 Missense_Mutation p.T608M 0.14 deleterious(0) probably_damaging(0.931) TCGA-WS-AB45-01 16 19711957 19711957 T G C16orf62 3'UTR 0.16 TCGA-WS-AB45-01 16 2002909 2002909 T C RPL3L Missense_Mutation p.S111G 0.17 deleterious(0.03) benign(0.082) TCGA-WS-AB45-01 16 20043706 20043706 G A GPR139 Missense_Mutation p.T138M 0.16 tolerated(0.11) benign(0.116) TCGA-WS-AB45-01 16 20085014 20085014 C T GPR139 5'UTR 0.13 TCGA-WS-AB45-01 16 2022107 2022107 A G TBL3 5'UTR 0.19 TCGA-WS-AB45-01 16 2028710 2028710 A G TBL3 3'UTR 0.10 TCGA-WS-AB45-01 16 2052653 2052653 C T ZNF598 Silent p.S182S 0.15 TCGA-WS-AB45-01 16 20809110 20809110 C T ERI2 Missense_Mutation p.C671Y 0.12 tolerated(1) benign(0) TCGA-WS-AB45-01 16 20975196 20975196 G A DNAH3 Missense_Mutation p.T3337M 0.16 deleterious(0.02) benign(0.006) TCGA-WS-AB45-01 16 2147345 2147345 C T PKD1 Silent p.S3460S 0.12 TCGA-WS-AB45-01 16 2156441 2156441 C T PKD1 Missense_Mutation p.A2483T 0.15 benign(0.094) TCGA-WS-AB45-01 16 2156665 2156665 C T PKD1 Missense_Mutation p.R2408H 0.15 benign(0.006) TCGA-WS-AB45-01 16 2160986 2160986 G A PKD1 Silent p.L1394L 0.14 TCGA-WS-AB45-01 16 2161190 2161190 G A PKD1 Silent p.F1326F 0.20 TCGA-WS-AB45-01 16 2167014 2167014 C - PKD1 Frame_Shift_Del p.V476Wfs*82 0.08 TCGA-WS-AB45-01 16 21716385 21716385 C T OTOA Intron 0.13 TCGA-WS-AB45-01 16 21811089 21811089 C T RP11-645C24.5 5'Flank 0.11 TCGA-WS-AB45-01 16 21968867 21968867 C A UQCRC2 Missense_Mutation p.L83M 0.08 deleterious(0.04) probably_damaging(0.996) TCGA-WS-AB45-01 16 2233699 2233699 G A CASKIN1 Missense_Mutation p.A526V 0.14 benign(0.093) TCGA-WS-AB45-01 16 2282275 2282275 C T E4F1 Silent p.L173L 0.16 TCGA-WS-AB45-01 16 2285306 2285306 C T E4F1 Silent p.D696D 0.13 TCGA-WS-AB45-01 16 2287396 2287396 G A DNASE1L2 Missense_Mutation p.V113M 0.12 tolerated(0.1) benign(0.15) TCGA-WS-AB45-01 16 22926393 22926393 G T HS3ST2 Missense_Mutation p.R205L 0.13 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 16 2335607 2335607 C T ABCA3 Missense_Mutation p.A1107T 0.21 deleterious(0) benign(0.284) TCGA-WS-AB45-01 16 23641346 23641346 G A PALB2 Missense_Mutation p.T710M 0.14 deleterious(0) probably_damaging(0.987) TCGA-WS-AB45-01 16 23707232 23707232 G A ERN2 Silent p.G579G 0.16 TCGA-WS-AB45-01 16 27221639 27221639 G A KDM8 Silent p.L103L 0.15 TCGA-WS-AB45-01 16 27455867 27455867 C T IL21R Missense_Mutation p.P171L 0.10 tolerated(0.05) benign(0.287) TCGA-WS-AB45-01 16 27480859 27480859 G A GTF3C1 Silent p.D1609D 0.10 TCGA-WS-AB45-01 16 27518427 27518427 G A GTF3C1 Silent p.C431C 0.14 TCGA-WS-AB45-01 16 27752021 27752021 C T KIAA0556 Silent p.T801T 0.17 TCGA-WS-AB45-01 16 27752179 27752179 G T KIAA0556 Missense_Mutation p.R854M 0.15 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 16 28488925 28488925 G A CLN3 Missense_Mutation p.A410V 0.21 deleterious(0.02) possibly_damaging(0.624) TCGA-WS-AB45-01 16 28734571 28734571 G A EIF3C Missense_Mutation p.R288H 0.06 deleterious(0.01) benign(0.058) TCGA-WS-AB45-01 16 28842018 28842018 C T ATXN2L Missense_Mutation p.R373W 0.18 deleterious(0) probably_damaging(0.984) TCGA-WS-AB45-01 16 28847726 28847726 G A ATXN2L Silent p.S1073S 0.15 TCGA-WS-AB45-01 16 28909554 28909554 G T ATP2A1 Missense_Mutation p.G516C 0.15 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 16 28948420 28948420 G A CD19 Silent p.A387A 0.14 TCGA-WS-AB45-01 16 28962454 28962454 G A NFATC2IP Missense_Mutation p.G41D 0.14 tolerated_low_confidence(0.21) unknown(0) TCGA-WS-AB45-01 16 29814786 29814786 A - KIF22 Frame_Shift_Del p.E491Nfs*36 0.13 TCGA-WS-AB45-01 16 29825109 29825109 G A PRRT2 Missense_Mutation p.R245H 0.22 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 16 29845345 29845345 C T MVP Missense_Mutation p.R179C 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-WS-AB45-01 16 29857560 29857560 C T MVP Silent p.S740S 0.11 TCGA-WS-AB45-01 16 30106609 30106609 G A YPEL3 Silent p.R65R 0.16 TCGA-WS-AB45-01 16 30197942 30197942 G A CORO1A Silent p.A74A 0.12 TCGA-WS-AB45-01 16 3026882 3026882 G A PKMYT1 Missense_Mutation p.P54L 0.09 tolerated(0.17) benign(0.023) TCGA-WS-AB45-01 16 30365545 30365545 C - CD2BP2 Frame_Shift_Del p.S60Pfs*12 0.12 TCGA-WS-AB45-01 16 30616193 30616193 G A ZNF689 Missense_Mutation p.R299C 0.08 tolerated(0.08) probably_damaging(0.98) TCGA-WS-AB45-01 16 3063895 3063895 G - CLDN9 Frame_Shift_Del p.L180Sfs*196 0.09 TCGA-WS-AB45-01 16 30666242 30666243 - A PRR14 Frame_Shift_Ins p.N318Kfs*8 0.13 TCGA-WS-AB45-01 16 30667689 30667689 T - PRR14 3'UTR 0.23 TCGA-WS-AB45-01 16 30731614 30731614 C A SRCAP Silent p.P983P 0.14 TCGA-WS-AB45-01 16 30780890 30780890 G A RNF40 Missense_Mutation p.R852H 0.14 deleterious(0) possibly_damaging(0.88) TCGA-WS-AB45-01 16 3080550 3080550 C T CCDC64B Missense_Mutation p.R221Q 0.19 tolerated(0.11) possibly_damaging(0.851) TCGA-WS-AB45-01 16 3085268 3085268 T G CCDC64B Missense_Mutation p.E77A 0.12 deleterious(0.01) possibly_damaging(0.641) TCGA-WS-AB45-01 16 30941404 30941404 C T FBXL19 Missense_Mutation p.P287L 0.18 tolerated(0.05) probably_damaging(0.953) TCGA-WS-AB45-01 16 30958373 30958373 G A FBXL19 Missense_Mutation p.G636D 0.14 tolerated(0.42) probably_damaging(0.986) TCGA-WS-AB45-01 16 31091420 31091420 C T ZNF646 Missense_Mutation p.R1259C 0.15 tolerated(0.05) possibly_damaging(0.799) TCGA-WS-AB45-01 16 31342587 31342587 G A ITGAM Silent p.A1127A 0.12 TCGA-WS-AB45-01 16 31367960 31367960 C - ITGAX Frame_Shift_Del p.Q55Kfs*3 0.16 TCGA-WS-AB45-01 16 31408724 31408724 C T ITGAD Missense_Mutation p.T61M 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-WS-AB45-01 16 31424522 31424522 G A ITGAD Missense_Mutation p.A651T 0.12 tolerated(0.06) possibly_damaging(0.598) TCGA-WS-AB45-01 16 31485032 31485032 G A TGFB1I1 Silent p.S53S 0.16 TCGA-WS-AB45-01 16 31485521 31485523 AGA - TGFB1I1 In_Frame_Del p.K126del 0.11 TCGA-WS-AB45-01 16 31500072 31500072 G A SLC5A2 Missense_Mutation p.R420H 0.09 deleterious(0.04) possibly_damaging(0.718) TCGA-WS-AB45-01 16 32893999 32893999 G A RP11-989E6.3 5'Flank 0.06 TCGA-WS-AB45-01 16 3299630 3299630 C T MEFV Missense_Mutation p.R354Q 0.17 tolerated(1) benign(0.004) TCGA-WS-AB45-01 16 339513 339513 G A AXIN1 Missense_Mutation p.R797C 0.10 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 16 3544744 3544744 G A C16orf90 Silent p.R60R 0.08 TCGA-WS-AB45-01 16 3639962 3639962 C T SLX4 Missense_Mutation p.R1226Q 0.08 tolerated(0.86) benign(0.002) TCGA-WS-AB45-01 16 3817721 3817721 T - CREBBP Frame_Shift_Del p.I1084Sfs*15 0.21 TCGA-WS-AB45-01 16 3843460 3843460 C T CREBBP Silent p.S381S 0.15 TCGA-WS-AB45-01 16 422277 422277 G A TMEM8A Missense_Mutation p.R676C 0.14 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 16 4242575 4242575 C T SRL Missense_Mutation p.R334H 0.11 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 16 4414633 4414633 C T CORO7 Missense_Mutation p.D368N 0.12 tolerated(0.57) benign(0.02) TCGA-WS-AB45-01 16 46931608 46931608 G A GPT2 Missense_Mutation p.A98T 0.16 tolerated(0.05) probably_damaging(0.98) TCGA-WS-AB45-01 16 48580135 48580135 T C N4BP1 Missense_Mutation p.I752M 0.18 tolerated(0.09) probably_damaging(0.997) TCGA-WS-AB45-01 16 4864564 4864564 C T GLYR1 Missense_Mutation p.V331M 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 16 4864569 4864569 G A GLYR1 Missense_Mutation p.A329V 0.11 deleterious(0.03) benign(0.037) TCGA-WS-AB45-01 16 4935830 4935830 C T PPL Silent p.P942P 0.17 TCGA-WS-AB45-01 16 49670955 49670955 G A ZNF423 Missense_Mutation p.S703L 0.09 deleterious(0.01) possibly_damaging(0.459) TCGA-WS-AB45-01 16 50324538 50324538 C T ADCY7 Silent p.D114D 0.14 TCGA-WS-AB45-01 16 5078938 5078938 C - NAGPA Frame_Shift_Del p.G288Vfs*139 0.19 TCGA-WS-AB45-01 16 50826571 50826571 A T CYLD Missense_Mutation p.I769F 0.13 deleterious(0) benign(0.305) TCGA-WS-AB45-01 16 53296923 53296923 C T CHD9 Missense_Mutation p.R1412W 0.06 probably_damaging(1) TCGA-WS-AB45-01 16 55361529 55361529 C T IRX6 Missense_Mutation p.R149C 0.16 deleterious(0) probably_damaging(0.994) TCGA-WS-AB45-01 16 56377778 56377778 G A GNAO1 Silent p.T327T 0.19 TCGA-WS-AB45-01 16 56669727 56669727 G A MT1M 3'Flank 0.22 TCGA-WS-AB45-01 16 57060196 57060196 C - NLRC5 Frame_Shift_Del p.P449Lfs*17 0.15 TCGA-WS-AB45-01 16 57081459 57081459 T A NLRC5 Missense_Mutation p.L1114H 0.14 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 16 57507635 57507635 C T DOK4 Missense_Mutation p.G251D 0.17 tolerated_low_confidence(0.61) benign(0.011) TCGA-WS-AB45-01 16 57787125 57787125 C - KATNB1 Frame_Shift_Del p.L333Sfs*18 0.18 TCGA-WS-AB45-01 16 58019359 58019359 C T TEPP Missense_Mutation p.R248C 0.12 deleterious_low_confidence(0.01) benign(0.296) TCGA-WS-AB45-01 16 58030436 58030436 G A ZNF319 Silent p.A578A 0.26 TCGA-WS-AB45-01 16 58545347 58545347 G A NDRG4 Missense_Mutation p.R348H 0.15 deleterious(0.03) probably_damaging(0.989) TCGA-WS-AB45-01 16 602700 602700 G - CAPN15 Frame_Shift_Del p.V945Wfs*29 0.13 TCGA-WS-AB45-01 16 66514647 66514647 C T BEAN1 Missense_Mutation p.P200L 0.22 tolerated(0.69) benign(0.001) TCGA-WS-AB45-01 16 66586494 66586494 T A CKLF 5'UTR 0.15 TCGA-WS-AB45-01 16 66600817 66600817 C T CMTM1 Missense_Mutation p.S134L 0.17 deleterious(0) possibly_damaging(0.889) TCGA-WS-AB45-01 16 66612973 66612973 C T CMTM1 3'UTR 0.09 TCGA-WS-AB45-01 16 66947148 66947148 C T CDH16 Missense_Mutation p.E314K 0.15 tolerated(0.66) possibly_damaging(0.608) TCGA-WS-AB45-01 16 67304977 67304977 G A SLC9A5 Missense_Mutation p.R852H 0.14 deleterious_low_confidence(0.04) benign(0) TCGA-WS-AB45-01 16 67397613 67397613 C T LRRC36 Missense_Mutation p.T233I 0.15 deleterious(0.01) possibly_damaging(0.812) TCGA-WS-AB45-01 16 677526 677526 C T RAB40C Silent p.G250G 0.13 TCGA-WS-AB45-01 16 67861792 67861792 G A TSNAXIP1 Missense_Mutation p.E625K 0.19 tolerated(0.22) benign(0.024) TCGA-WS-AB45-01 16 68225613 68225613 C A NFATC3 Missense_Mutation p.P1014H 0.14 tolerated_low_confidence(0.07) benign(0.01) TCGA-WS-AB45-01 16 68264451 68264452 - G ESRP2 Frame_Shift_Ins p.V636Sfs*57 0.13 TCGA-WS-AB45-01 16 683736 683736 G A WFIKKN1 Silent p.T442T 0.07 TCGA-WS-AB45-01 16 68894235 68894235 C T TANGO6 Silent p.D181D 0.11 TCGA-WS-AB45-01 16 69184472 69184472 G A CIRH1A Silent p.E257E 0.14 TCGA-WS-AB45-01 16 69200981 69200981 C A CIRH1A Missense_Mutation p.L613I 0.14 deleterious(0.01) benign(0.299) TCGA-WS-AB45-01 16 69317969 69317969 C T SNTB2 Silent p.S389S 0.16 TCGA-WS-AB45-01 16 69385540 69385540 A G TMED6 Silent p.A39A 0.14 TCGA-WS-AB45-01 16 705641 705641 G A WDR90 Missense_Mutation p.R596H 0.09 tolerated(0.1) benign(0.002) TCGA-WS-AB45-01 16 706044 706044 C T WDR90 Intron 0.44 TCGA-WS-AB45-01 16 70698147 70698147 G - MTSS1L Frame_Shift_Del p.G560Afs*34 0.09 TCGA-WS-AB45-01 16 70916707 70916707 G A HYDIN Silent p.S3357S 0.23 TCGA-WS-AB45-01 16 71570593 71570593 A - CHST4 Frame_Shift_Del p.M7* 0.15 TCGA-WS-AB45-01 16 71668254 71668254 G A MARVELD3 Intron 0.15 TCGA-WS-AB45-01 16 72162995 72162995 C T PMFBP1 Silent p.L640L 0.12 TCGA-WS-AB45-01 16 72821538 72821538 T C ZFHX3 Missense_Mutation p.Q3546R 0.15 unknown(0) TCGA-WS-AB45-01 16 72827275 72827275 G A ZFHX3 Silent p.D3102D 0.19 TCGA-WS-AB45-01 16 74443491 74443491 G A CLEC18B Silent p.N429N 0.06 TCGA-WS-AB45-01 16 74497275 74497275 G A GLG1 Missense_Mutation p.R924C 0.24 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 16 74519790 74519790 T C GLG1 Missense_Mutation p.D492G 0.13 tolerated(0.09) benign(0.108) TCGA-WS-AB45-01 16 76555940 76555940 G A CNTNAP4 Silent p.P774P 0.15 TCGA-WS-AB45-01 16 77775538 77775538 G A NUDT7 Silent p.P136P 0.12 TCGA-WS-AB45-01 16 79632871 79632871 A G MAF Missense_Mutation p.V310A 0.13 deleterious(0) probably_damaging(0.976) TCGA-WS-AB45-01 16 81094931 81094931 G A C16orf46 Silent p.A341A 0.10 TCGA-WS-AB45-01 16 815117 815117 G A MSLN Missense_Mutation p.R173Q 0.11 tolerated(0.63) benign(0.005) TCGA-WS-AB45-01 16 816104 816104 G A MSLN Missense_Mutation p.S314N 0.16 tolerated(0.97) benign(0.001) TCGA-WS-AB45-01 16 83065753 83065753 G A CDH13 Missense_Mutation p.R146Q 0.08 tolerated(0.72) benign(0.011) TCGA-WS-AB45-01 16 839665 839665 G A CHTF18 Missense_Mutation p.V186I 0.15 tolerated(0.21) benign(0.001) TCGA-WS-AB45-01 16 84132690 84132690 C T MBTPS1 Missense_Mutation p.R130Q 0.08 deleterious(0.04) benign(0.144) TCGA-WS-AB45-01 16 84215066 84215066 C T TAF1C Silent p.L370L 0.09 TCGA-WS-AB45-01 16 84229196 84229196 C T ADAD2 Silent p.S397S 0.14 TCGA-WS-AB45-01 16 88494483 88494483 C - ZNF469 Frame_Shift_Del p.R204Gfs*142 0.12 TCGA-WS-AB45-01 16 8851663 8851663 G A ABAT Silent p.A122A 0.21 TCGA-WS-AB45-01 16 88580831 88580831 G A ZFPM1 Missense_Mutation p.R102H 0.10 tolerated(0.16) benign(0.019) TCGA-WS-AB45-01 16 88712577 88712577 C G CYBA Missense_Mutation p.A106P 0.17 tolerated(0.57) benign(0.125) TCGA-WS-AB45-01 16 88801340 88801340 G A PIEZO1 Silent p.L597L 0.09 TCGA-WS-AB45-01 16 88880890 88880890 G A GALNS Missense_Mutation p.T509I 0.11 tolerated_low_confidence(0.17) benign(0.09) TCGA-WS-AB45-01 16 89043070 89043070 C T CBFA2T3 Missense_Mutation p.G49D 0.15 tolerated_low_confidence(0.07) benign(0.298) TCGA-WS-AB45-01 16 89169037 89169037 C T ACSF3 Missense_Mutation p.A231V 0.20 tolerated(0.12) benign(0.128) TCGA-WS-AB45-01 16 89294013 89294013 C T ZNF778 Silent p.H411H 0.16 TCGA-WS-AB45-01 16 89777305 89777305 G - VPS9D1 Frame_Shift_Del p.P316Rfs*93 0.10 TCGA-WS-AB45-01 16 89790026 89790026 G A ZNF276 Silent p.T305T 0.14 TCGA-WS-AB45-01 16 90001600 90001600 C T TUBB3 Silent p.N247N 0.23 TCGA-WS-AB45-01 16 90038379 90038379 C T CENPBD1 5'UTR 0.23 TCGA-WS-AB45-01 17 1028581 1028581 G A ABR Silent p.S61S 0.21 TCGA-WS-AB45-01 17 10301833 10301833 C A MYH8 Missense_Mutation p.S1369I 0.13 deleterious(0.01) possibly_damaging(0.571) TCGA-WS-AB45-01 17 11145198 11145198 G A SHISA6 Silent p.T153T 0.15 TCGA-WS-AB45-01 17 11622752 11622752 G A DNAH9 Missense_Mutation p.R1885H 0.12 probably_damaging(0.998) TCGA-WS-AB45-01 17 12647712 12647712 A G MYOCD Silent p.Q310Q 0.09 TCGA-WS-AB45-01 17 15142817 15142818 - A PMP22 Frame_Shift_Ins p.Y97Lfs*126 0.14 TCGA-WS-AB45-01 17 1553124 1553124 C - RILP 5'UTR 0.15 TCGA-WS-AB45-01 17 15942780 15942780 G A NCOR1 Nonsense_Mutation p.R2308* 0.21 TCGA-WS-AB45-01 17 16347427 16347427 G A FAM211A Silent p.A170A 0.19 TCGA-WS-AB45-01 17 16692415 16692415 A G CCDC144A Intron 0.28 TCGA-WS-AB45-01 17 17062275 17062275 C T MPRIP Missense_Mutation p.R669W 0.11 deleterious(0.01) possibly_damaging(0.761) TCGA-WS-AB45-01 17 17088267 17088267 C T MPRIP 3'UTR 0.12 TCGA-WS-AB45-01 17 18023329 18023329 G A MYO15A Silent p.S405S 0.18 TCGA-WS-AB45-01 17 18060285 18060285 C T MYO15A Silent p.V2873V 0.17 TCGA-WS-AB45-01 17 18149759 18149759 C A FLII Missense_Mutation p.Q1023H 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-WS-AB45-01 17 18157899 18157899 G A FLII Missense_Mutation p.R171C 0.14 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 17 19284483 19284483 C A MAPK7 Missense_Mutation p.L321I 0.23 tolerated(0.21) unknown(0) TCGA-WS-AB45-01 17 19319073 19319073 G A RNF112 Missense_Mutation p.R494Q 0.17 tolerated(0.21) benign(0.367) TCGA-WS-AB45-01 17 20356350 20356350 C T LGALS9B Missense_Mutation p.A203T 0.08 tolerated(0.54) benign(0.008) TCGA-WS-AB45-01 17 20805688 20805688 C T RP11-344E13.3 RNA 0.24 TCGA-WS-AB45-01 17 2266763 2266763 G A SGSM2 Missense_Mutation p.R226Q 0.22 tolerated(1) benign(0.002) TCGA-WS-AB45-01 17 25910014 25910014 C T KSR1 Missense_Mutation p.T151M 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-WS-AB45-01 17 25934954 25934954 G A KSR1 Missense_Mutation p.R555Q 0.19 deleterious(0.03) possibly_damaging(0.879) TCGA-WS-AB45-01 17 26087698 26087698 C T NOS2 Silent p.A987A 0.11 TCGA-WS-AB45-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.14 TCGA-WS-AB45-01 17 26824161 26824161 C T SLC13A2 Silent p.I600I 0.22 TCGA-WS-AB45-01 17 26824225 26824225 C T SLC13A2 Nonsense_Mutation p.Q622* 0.11 TCGA-WS-AB45-01 17 26864250 26864250 C - FOXN1 Frame_Shift_Del p.P583Lfs*5 0.15 TCGA-WS-AB45-01 17 26988884 26988884 A G SDF2 Missense_Mutation p.V4A 0.13 tolerated(0.12) benign(0) TCGA-WS-AB45-01 17 27401824 27401824 G A MYO18A Silent p.S2043S 0.10 TCGA-WS-AB45-01 17 27613120 27613120 G A NUFIP2 Missense_Mutation p.T631M 0.09 deleterious(0.01) benign(0.024) TCGA-WS-AB45-01 17 27899563 27899563 G A TP53I13 Missense_Mutation p.R306H 0.18 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 17 27903274 27903274 G A GIT1 Silent p.D534D 0.07 TCGA-WS-AB45-01 17 28750028 28750028 T C CPD Silent p.G548G 0.13 TCGA-WS-AB45-01 17 28776687 28776687 C T CPD Missense_Mutation p.A997V 0.19 tolerated(0.06) probably_damaging(1) TCGA-WS-AB45-01 17 29161385 29161386 AA - ATAD5 Frame_Shift_Del p.K96Rfs*15 0.14 TCGA-WS-AB45-01 17 29652960 29652960 G A NF1 Missense_Mutation p.R1653H 0.19 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 17 29902534 29902534 C T AC003101.1 Missense_Mutation p.A104V 0.18 possibly_damaging(0.691) TCGA-WS-AB45-01 17 3030732 3030732 C T OR1G1 Silent p.T38T 0.24 TCGA-WS-AB45-01 17 33269890 33269890 C T CCT6B Missense_Mutation p.R217H 0.10 deleterious(0.01) possibly_damaging(0.705) TCGA-WS-AB45-01 17 3336719 3336719 C T OR1E2 Silent p.L139L 0.11 TCGA-WS-AB45-01 17 33469249 33469249 C - NLE1 Intron 0.11 TCGA-WS-AB45-01 17 33481620 33481620 C T UNC45B Missense_Mutation p.R167C 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-WS-AB45-01 17 33482401 33482401 C T UNC45B Silent p.C242C 0.16 TCGA-WS-AB45-01 17 3352192 3352192 T - SPATA22 Frame_Shift_Del p.N194Tfs*30 0.15 TCGA-WS-AB45-01 17 33806619 33806620 - A SLFN12L Frame_Shift_Ins p.N204* 0.10 TCGA-WS-AB45-01 17 34106076 34106076 C T MMP28 Silent p.A65A 0.18 TCGA-WS-AB45-01 17 34171711 34171711 G A TAF15 Missense_Mutation p.G470S 0.10 deleterious_low_confidence(0) unknown(0) TCGA-WS-AB45-01 17 3447903 3447903 G A TRPV3 Missense_Mutation p.T94I 0.13 tolerated(0.1) possibly_damaging(0.494) TCGA-WS-AB45-01 17 34870339 34870339 G A MYO19 Nonsense_Mutation p.R224* 0.10 TCGA-WS-AB45-01 17 3493326 3493326 C T SHPK Nonsense_Mutation p.W273* 0.11 TCGA-WS-AB45-01 17 35454764 35454764 C T ACACA Splice_Site p.X2240_splice 0.10 TCGA-WS-AB45-01 17 35830557 35830557 C T TADA2A Missense_Mutation p.R317C 0.15 tolerated(0.06) benign(0.025) TCGA-WS-AB45-01 17 35878921 35878921 C T SYNRG 3'UTR 0.14 TCGA-WS-AB45-01 17 35981256 35981256 C T DDX52 Missense_Mutation p.A473T 0.15 deleterious(0) probably_damaging(0.959) TCGA-WS-AB45-01 17 36485406 36485406 G A GPR179 Missense_Mutation p.A1349V 0.10 tolerated(0.25) benign(0.003) TCGA-WS-AB45-01 17 36622721 36622721 C T ARHGAP23 Missense_Mutation p.T266M 0.23 deleterious(0.05) possibly_damaging(0.693) TCGA-WS-AB45-01 17 36708254 36708254 G - SRCIN1 Frame_Shift_Del p.S866Afs*4 0.14 TCGA-WS-AB45-01 17 36734785 36734785 G A SRCIN1 Silent p.H94H 0.10 TCGA-WS-AB45-01 17 36734859 36734859 C T SRCIN1 Missense_Mutation p.G70R 0.14 deleterious(0.03) benign(0.068) TCGA-WS-AB45-01 17 37627659 37627659 C - CDK12 Frame_Shift_Del p.P526Lfs*84 0.13 TCGA-WS-AB45-01 17 38078740 38078740 G A ORMDL3 3'UTR 0.28 TCGA-WS-AB45-01 17 38243092 38243092 C T THRA Missense_Mutation p.P237S 0.16 deleterious(0.01) possibly_damaging(0.882) TCGA-WS-AB45-01 17 38520335 38520335 G A CTD-2267D19.3 3'UTR 0.22 TCGA-WS-AB45-01 17 38856534 38856534 C T KRT24 Silent p.A319A 0.09 TCGA-WS-AB45-01 17 39092786 39092786 G T KRT23 Silent p.R24R 0.13 TCGA-WS-AB45-01 17 39120742 39120742 C T KRT39 Silent p.S169S 0.17 TCGA-WS-AB45-01 17 39135175 39135175 G A KRT40 Silent p.A359A 0.12 TCGA-WS-AB45-01 17 39182784 39182784 T C KRTAP1-5 3'UTR 0.07 TCGA-WS-AB45-01 17 3924440 3924440 T C ZZEF1 Missense_Mutation p.T2463A 0.14 tolerated(0.11) probably_damaging(0.998) TCGA-WS-AB45-01 17 39253900 39253900 C T KRTAP4-8 Missense_Mutation p.R146H 0.12 tolerated(0.09) unknown(0) TCGA-WS-AB45-01 17 39913955 39913955 C T JUP Missense_Mutation p.D619N 0.18 tolerated(0.1) benign(0.22) TCGA-WS-AB45-01 17 40011103 40011103 C T KLHL11 Missense_Mutation p.G339D 0.16 tolerated(0.17) benign(0.206) TCGA-WS-AB45-01 17 40280818 40280818 G A RAB5C Missense_Mutation p.A89V 0.10 deleterious(0) probably_damaging(0.953) TCGA-WS-AB45-01 17 40316183 40316183 G T KCNH4 Missense_Mutation p.L697I 0.13 tolerated(0.4) benign(0.021) TCGA-WS-AB45-01 17 40688638 40688638 C T NAGLU Silent p.A116A 0.07 TCGA-WS-AB45-01 17 40723741 40723741 C T MLX 3'UTR 0.17 TCGA-WS-AB45-01 17 40738890 40738890 G A FAM134C Missense_Mutation p.R133W 0.16 deleterious(0.01) possibly_damaging(0.765) TCGA-WS-AB45-01 17 40824342 40824342 C - PLEKHH3 Frame_Shift_Del p.A280Rfs*7 0.12 TCGA-WS-AB45-01 17 40825500 40825500 G A PLEKHH3 Missense_Mutation p.R189C 0.13 deleterious(0) unknown(0) TCGA-WS-AB45-01 17 41170165 41170165 G A VAT1 Silent p.F218F 0.13 TCGA-WS-AB45-01 17 41846933 41846933 C T DUSP3 3'UTR 0.20 TCGA-WS-AB45-01 17 42155651 42155651 G A HDAC5 3'UTR 0.14 TCGA-WS-AB45-01 17 42394948 42394948 T G RUNDC3A Intron 0.22 TCGA-WS-AB45-01 17 42456043 42456043 T C ITGA2B Silent p.V638V 0.13 TCGA-WS-AB45-01 17 42636437 42636437 C T FZD2 Missense_Mutation p.R461C 0.10 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 17 43531174 43531174 G A PLEKHM1 Missense_Mutation p.P682S 0.16 tolerated(0.73) possibly_damaging(0.827) TCGA-WS-AB45-01 17 43924143 43924143 A G SPPL2C Missense_Mutation p.E624G 0.12 tolerated_low_confidence(0.12) benign(0.011) TCGA-WS-AB45-01 17 44064450 44064450 A - MAPT Frame_Shift_Del p.A393Pfs*12 0.12 TCGA-WS-AB45-01 17 44068859 44068859 C T MAPT Missense_Mutation p.R472W 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-WS-AB45-01 17 4448571 4448571 G A MYBBP1A Missense_Mutation p.R715W 0.15 deleterious(0.03) benign(0.001) TCGA-WS-AB45-01 17 44845838 44845838 C T WNT3 Missense_Mutation p.G306S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 17 44952507 44952507 C T WNT9B Silent p.A125A 0.14 TCGA-WS-AB45-01 17 45560451 45560451 C T MRPL45P2 RNA 0.14 TCGA-WS-AB45-01 17 4579363 4579363 C T PELP1 Silent p.S316S 0.15 TCGA-WS-AB45-01 17 4579719 4579719 C A PELP1 Missense_Mutation p.Q262H 0.20 probably_damaging(0.949) TCGA-WS-AB45-01 17 45885953 45885953 G A OSBPL7 Missense_Mutation p.R791C 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 17 45916181 45916181 G A SCRN2 Missense_Mutation p.R250W 0.21 deleterious(0.05) benign(0.013) TCGA-WS-AB45-01 17 45924716 45924716 G - SP6 Frame_Shift_Del p.G362Afs*37 0.12 TCGA-WS-AB45-01 17 46023335 46023336 TC - PNPO Frame_Shift_Del p.S176Cfs*4 0.15 TCGA-WS-AB45-01 17 46135788 46135788 G - NFE2L1 Frame_Shift_Del p.G370Afs*44 0.10 TCGA-WS-AB45-01 17 46262165 46262165 G A SKAP1 Missense_Mutation p.R163W 0.15 deleterious(0) probably_damaging(0.976) TCGA-WS-AB45-01 17 4649120 4649120 C T ZMYND15 Silent p.C696C 0.13 TCGA-WS-AB45-01 17 46882220 46882220 C T TTLL6 Silent p.A79A 0.14 TCGA-WS-AB45-01 17 46939657 46939657 C T CALCOCO2 Silent p.S412S 0.13 TCGA-WS-AB45-01 17 47295191 47295192 - C ABI3 Frame_Shift_Ins p.E128Rfs*160 0.12 TCGA-WS-AB45-01 17 47295216 47295216 C T ABI3 Missense_Mutation p.T134M 0.11 deleterious(0.05) probably_damaging(0.961) TCGA-WS-AB45-01 17 48165592 48165592 G A ITGA3 Intron 0.13 TCGA-WS-AB45-01 17 4836597 4836597 G A GP1BA Missense_Mutation p.R233H 0.17 tolerated(0.12) probably_damaging(0.938) TCGA-WS-AB45-01 17 48431028 48431028 G T XYLT2 Missense_Mutation p.G58V 0.10 tolerated_low_confidence(0.1) benign(0.237) TCGA-WS-AB45-01 17 48434532 48434532 G A XYLT2 Silent p.T620T 0.15 TCGA-WS-AB45-01 17 4858446 4858446 G T ENO3 Missense_Mutation p.G174V 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-WS-AB45-01 17 48586048 48586050 AAG - MYCBPAP In_Frame_Del p.K49del 0.13 TCGA-WS-AB45-01 17 48614119 48614119 G A EPN3 Missense_Mutation p.G68S 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 17 48626470 48626470 G - SPATA20 Frame_Shift_Del p.G196Afs*10 0.11 TCGA-WS-AB45-01 17 48653411 48653411 G A CACNA1G Missense_Mutation p.A550T 0.13 tolerated(0.39) benign(0.001) TCGA-WS-AB45-01 17 48745256 48745256 C T ABCC3 Silent p.Y556Y 0.17 TCGA-WS-AB45-01 17 49048172 49048172 G A SPAG9 Missense_Mutation p.T1249M 0.08 tolerated(0.11) benign(0.001) TCGA-WS-AB45-01 17 49073953 49073953 G A SPAG9 Silent p.G647G 0.16 TCGA-WS-AB45-01 17 5085882 5085882 C - ZNF594 Frame_Shift_Del p.G557Efs*32 0.14 TCGA-WS-AB45-01 17 53040766 53040766 C T COX11 Silent p.A183A 0.15 TCGA-WS-AB45-01 17 53345402 53345402 C T HLF Missense_Mutation p.P136S 0.14 tolerated(0.31) benign(0.008) TCGA-WS-AB45-01 17 5336166 5336166 A - RPAIN 3'Flank 0.33 TCGA-WS-AB45-01 17 53851196 53851196 C T PCTP Missense_Mutation p.R151W 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 17 5456843 5456843 C A NLRP1 Missense_Mutation p.W797C 0.13 tolerated(0.08) possibly_damaging(0.677) TCGA-WS-AB45-01 17 5463309 5463309 G A NLRP1 Missense_Mutation p.A236V 0.10 tolerated_low_confidence(0.29) benign(0.032) TCGA-WS-AB45-01 17 54978787 54978787 G - TRIM25 Frame_Shift_Del p.S361Vfs*20 0.10 TCGA-WS-AB45-01 17 55193540 55193540 G A AKAP1 Missense_Mutation p.E784K 0.10 tolerated(0.18) benign(0.142) TCGA-WS-AB45-01 17 55962763 55962763 T G CUEDC1 Missense_Mutation p.K55Q 0.11 deleterious(0.02) probably_damaging(0.968) TCGA-WS-AB45-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.16 TCGA-WS-AB45-01 17 56774060 56774060 G A RAD51C Silent p.Q137Q 0.19 TCGA-WS-AB45-01 17 59667872 59667872 A - NACA2 3'UTR 0.11 TCGA-WS-AB45-01 17 59958512 59958512 G A INTS2 Missense_Mutation p.R712C 0.16 deleterious(0) possibly_damaging(0.687) TCGA-WS-AB45-01 17 60744194 60744194 G A MRC2 Silent p.S312S 0.12 TCGA-WS-AB45-01 17 60754671 60754671 G A MRC2 Missense_Mutation p.A626T 0.24 deleterious(0.04) benign(0.442) TCGA-WS-AB45-01 17 61497391 61497391 G A TANC2 Missense_Mutation p.E1350K 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-WS-AB45-01 17 61566442 61566442 T C ACE Missense_Mutation p.Y864H 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-WS-AB45-01 17 61574163 61574163 G A ACE Missense_Mutation p.A1170T 0.18 tolerated(0.19) benign(0.23) TCGA-WS-AB45-01 17 61972614 61972614 G A CSH1 Intron 0.09 TCGA-WS-AB45-01 17 62042021 62042021 C T SCN4A Missense_Mutation p.G420D 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 17 62969542 62969543 - A AMZ2P1 RNA 0.22 TCGA-WS-AB45-01 17 64059082 64059082 T - CEP112 Frame_Shift_Del p.K358Sfs*6 0.15 TCGA-WS-AB45-01 17 64881105 64881105 C T CACNG5 Silent p.A192A 0.14 TCGA-WS-AB45-01 17 65050149 65050149 C T CACNG1 Silent p.G89G 0.23 TCGA-WS-AB45-01 17 65134212 65134212 G A HELZ Missense_Mutation p.R930C 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 17 67280137 67280137 G A ABCA5 Silent p.D783D 0.16 TCGA-WS-AB45-01 17 6945482 6945482 C - SLC16A11 Frame_Shift_Del p.G340Vfs*12 0.14 TCGA-WS-AB45-01 17 71166302 71166302 A G SSTR2 Missense_Mutation p.M282V 0.25 tolerated(0.87) benign(0) TCGA-WS-AB45-01 17 7139558 7139558 C - PHF23 Frame_Shift_Del p.D230Ifs*37 0.15 TCGA-WS-AB45-01 17 7163733 7163733 C T CLDN7 Missense_Mutation p.R199H 0.10 tolerated(0.13) benign(0.002) TCGA-WS-AB45-01 17 7224146 7224146 G A NEURL4 Missense_Mutation p.R1153W 0.19 deleterious(0) probably_damaging(0.956) TCGA-WS-AB45-01 17 72832671 72832671 C T TMEM104 Missense_Mutation p.R446C 0.28 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 17 72848464 72848464 G A GRIN2C Missense_Mutation p.S229L 0.18 deleterious(0) possibly_damaging(0.713) TCGA-WS-AB45-01 17 72916002 72916002 G T USH1G Missense_Mutation p.P310H 0.17 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 17 72916570 72916570 C T USH1G Missense_Mutation p.A121T 0.22 deleterious(0.04) possibly_damaging(0.764) TCGA-WS-AB45-01 17 72927105 72927105 G A OTOP2 Missense_Mutation p.A459T 0.15 tolerated(0.5) benign(0.003) TCGA-WS-AB45-01 17 72943309 72943309 C A OTOP3 Nonsense_Mutation p.Y453* 0.20 TCGA-WS-AB45-01 17 7342894 7342894 C T FGF11 5'UTR 0.28 TCGA-WS-AB45-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.10 TCGA-WS-AB45-01 17 73498706 73498706 C A CASKIN2 Missense_Mutation p.G817W 0.16 deleterious(0.01) possibly_damaging(0.885) TCGA-WS-AB45-01 17 73662598 73662598 G A RECQL5 Missense_Mutation p.R14W 0.11 tolerated(0.18) benign(0.339) TCGA-WS-AB45-01 17 73753077 73753077 G A ITGB4 Missense_Mutation p.V1703M 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 17 73838629 73838629 C T UNC13D Missense_Mutation p.G152R 0.17 tolerated(0.44) possibly_damaging(0.668) TCGA-WS-AB45-01 17 73886900 73886900 G A TRIM65 Missense_Mutation p.A505V 0.16 deleterious(0) probably_damaging(0.929) TCGA-WS-AB45-01 17 73887247 73887247 G A TRIM65 Silent p.R389R 0.12 TCGA-WS-AB45-01 17 73895713 73895713 C T MRPL38 Silent p.T251T 0.12 TCGA-WS-AB45-01 17 73919325 73919325 C T FBF1 Missense_Mutation p.A441T 0.21 tolerated(0.5) benign(0.016) TCGA-WS-AB45-01 17 74303758 74303758 C T QRICH2 5'UTR 0.18 TCGA-WS-AB45-01 17 74475884 74475884 C T RHBDF2 Missense_Mutation p.R97Q 0.18 tolerated_low_confidence(0.22) benign(0.002) TCGA-WS-AB45-01 17 74524688 74524688 G A CYGB Missense_Mutation p.P182L 0.15 deleterious_low_confidence(0.01) benign(0) TCGA-WS-AB45-01 17 7578407 7578407 G A TP53 Missense_Mutation p.R175C 0.10 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 17 76113420 76113420 A C TMC6 Missense_Mutation p.I736S 0.17 deleterious(0) possibly_damaging(0.493) TCGA-WS-AB45-01 17 76127578 76127578 C T TMC8 5'UTR 0.14 TCGA-WS-AB45-01 17 76395443 76395443 C T PGS1 Missense_Mutation p.R176C 0.12 deleterious(0.02) benign(0.398) TCGA-WS-AB45-01 17 76503682 76503682 G A DNAH17 Missense_Mutation p.T1477M 0.15 benign(0.09) TCGA-WS-AB45-01 17 7668873 7668873 C T DNAH2 Silent p.F1167F 0.11 TCGA-WS-AB45-01 17 7680134 7680134 A G DNAH2 Missense_Mutation p.D1662G 0.10 possibly_damaging(0.87) TCGA-WS-AB45-01 17 76809902 76809902 G A USP36 Silent p.N406N 0.12 TCGA-WS-AB45-01 17 77081356 77081357 - C ENGASE Frame_Shift_Ins p.T547Hfs*45 0.13 TCGA-WS-AB45-01 17 77709045 77709045 G A ENPP7 Silent p.T201T 0.10 TCGA-WS-AB45-01 17 7802420 7802420 G A CHD3 Missense_Mutation p.R807H 0.15 possibly_damaging(0.812) TCGA-WS-AB45-01 17 7809009 7809009 C T CHD3 Silent p.V1462V 0.13 TCGA-WS-AB45-01 17 78092596 78092596 G A GAA Missense_Mutation p.D931N 0.12 tolerated(0.29) benign(0.004) TCGA-WS-AB45-01 17 78327958 78327958 C T RNF213 Missense_Mutation p.A3573V 0.12 benign(0.004) TCGA-WS-AB45-01 17 78328351 78328351 G A RNF213 Missense_Mutation p.A3613T 0.22 probably_damaging(0.919) TCGA-WS-AB45-01 17 79078419 79078419 G A BAIAP2 Missense_Mutation p.S391N 0.21 tolerated(0.24) possibly_damaging(0.744) TCGA-WS-AB45-01 17 79082966 79082966 C A BAIAP2 Intron 0.29 TCGA-WS-AB45-01 17 79093826 79093826 T C AATK Missense_Mutation p.T1265A 0.18 tolerated(0.57) benign(0.003) TCGA-WS-AB45-01 17 7916536 7916536 T C GUCY2D Silent p.S743S 0.23 TCGA-WS-AB45-01 17 79168751 79168751 A C AZI1 Missense_Mutation p.L680V 0.12 tolerated(0.2) benign(0.014) TCGA-WS-AB45-01 17 79212827 79212827 C T ENTHD2 Missense_Mutation p.A3T 0.14 deleterious(0) benign(0.078) TCGA-WS-AB45-01 17 79428154 79428154 C T RP11-1055B8.7 Silent p.A2155A 0.13 TCGA-WS-AB45-01 17 79514341 79514341 G A C17orf70 Silent p.N589N 0.15 TCGA-WS-AB45-01 17 79615174 79615174 C T TSPAN10 Silent p.G306G 0.19 TCGA-WS-AB45-01 17 79661956 79661956 C T HGS Silent p.L326L 0.09 TCGA-WS-AB45-01 17 79671365 79671366 - C SLC25A10 Frame_Shift_Ins p.K58Qfs*123 0.13 TCGA-WS-AB45-01 17 79866943 79866943 A G PCYT2 Intron 0.21 TCGA-WS-AB45-01 17 79893012 79893012 C T PYCR1 Silent p.A110A 0.28 TCGA-WS-AB45-01 17 7990804 7990804 C T ALOX12B 5'UTR 0.15 TCGA-WS-AB45-01 17 79914823 79914823 G A NOTUM Missense_Mutation p.R275C 0.21 deleterious(0.01) possibly_damaging(0.832) TCGA-WS-AB45-01 17 79953900 79953900 G A ASPSCR1 Silent p.T155T 0.13 TCGA-WS-AB45-01 17 80401857 80401857 C T C17orf62 3'UTR 0.17 TCGA-WS-AB45-01 17 8045732 8045732 C T PER1 Missense_Mutation p.D1102N 0.17 deleterious(0) possibly_damaging(0.657) TCGA-WS-AB45-01 17 80601889 80601889 C T WDR45B Silent p.A26A 0.10 TCGA-WS-AB45-01 17 80693632 80693633 - A FN3K Frame_Shift_Ins p.V42Sfs*12 0.10 TCGA-WS-AB45-01 17 80763848 80763848 G A TBCD Missense_Mutation p.E350K 0.09 deleterious(0.02) possibly_damaging(0.707) TCGA-WS-AB45-01 17 80899324 80899326 CTT - TBCD In_Frame_Del p.L1178del 0.29 TCGA-WS-AB45-01 17 8171955 8171955 C G PFAS Missense_Mutation p.L1163V 0.19 deleterious(0.01) possibly_damaging(0.738) TCGA-WS-AB45-01 17 8197922 8197922 G A SLC25A35 Silent p.P68P 0.17 TCGA-WS-AB45-01 17 8402735 8402735 C T MYH10 Silent p.A1268A 0.13 TCGA-WS-AB45-01 17 8731454 8731454 T C PIK3R6 Missense_Mutation p.Y456C 0.14 deleterious(0) probably_damaging(0.937) TCGA-WS-AB45-01 17 8788048 8788048 T C PIK3R5 Silent p.L727L 0.15 TCGA-WS-AB45-01 17 8926573 8926573 G A NTN1 Missense_Mutation p.V295M 0.15 tolerated(0.13) possibly_damaging(0.61) TCGA-WS-AB45-01 17 9862623 9862623 T - GAS7 Intron 0.13 TCGA-WS-AB45-01 18 11886994 11886994 G A MPPE1 Silent p.N200N 0.09 TCGA-WS-AB45-01 18 12358683 12358683 C T AFG3L2 Missense_Mutation p.A338T 0.17 deleterious(0) probably_damaging(0.957) TCGA-WS-AB45-01 18 12680810 12680810 G A CEP76 Silent p.H380H 0.13 TCGA-WS-AB45-01 18 14183733 14183733 T C ANKRD20A5P RNA 0.15 TCGA-WS-AB45-01 18 14822653 14822653 A G ANKRD30B Missense_Mutation p.K788R 0.13 deleterious(0.02) probably_damaging(0.969) TCGA-WS-AB45-01 18 14848777 14848777 A - ANKRD30B Frame_Shift_Del p.D965Ifs*30 0.14 TCGA-WS-AB45-01 18 19780796 19780796 G A GATA6 3'UTR 0.10 TCGA-WS-AB45-01 18 19995553 19995553 G - CTAGE1 Frame_Shift_Del p.P741Qfs*15 0.11 TCGA-WS-AB45-01 18 20878016 20878016 C T TMEM241 Silent p.A282A 0.15 TCGA-WS-AB45-01 18 21470011 21470011 C T LAMA3 Silent p.F1780F 0.12 TCGA-WS-AB45-01 18 21483980 21483980 C T LAMA3 Silent p.G2134G 0.15 TCGA-WS-AB45-01 18 21735993 21735993 T C CABYR Silent p.A176A 0.11 TCGA-WS-AB45-01 18 21745069 21745069 G A OSBPL1A Missense_Mutation p.R904C 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 18 22805083 22805083 G A ZNF521 Silent p.N933N 0.20 TCGA-WS-AB45-01 18 2666912 2666912 G A SMCHD1 Silent p.S102S 0.13 TCGA-WS-AB45-01 18 2740724 2740724 G A SMCHD1 Missense_Mutation p.G1180R 0.17 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 18 28968357 28968357 A G DSG4 Missense_Mutation p.K82E 0.13 tolerated(0.09) benign(0.392) TCGA-WS-AB45-01 18 29339856 29339856 T - SLC25A52 Frame_Shift_Del p.I267Sfs*9 0.08 TCGA-WS-AB45-01 18 32826217 32826217 G T ZNF397 Missense_Mutation p.K516N 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-WS-AB45-01 18 34335272 34335272 G A FHOD3 Missense_Mutation p.D1300N 0.19 deleterious(0) possibly_damaging(0.689) TCGA-WS-AB45-01 18 3458302 3458302 C T TGIF1 3'UTR 0.19 TCGA-WS-AB45-01 18 40323632 40323632 A - RIT2 Frame_Shift_Del p.F160Lfs*18 0.15 TCGA-WS-AB45-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.15 TCGA-WS-AB45-01 18 44063710 44063710 T C LOXHD1 Splice_Site p.X950_splice 0.17 TCGA-WS-AB45-01 18 44561961 44561961 C G TCEB3B 5'UTR 0.12 TCGA-WS-AB45-01 18 47800696 47800696 G A MBD1 Missense_Mutation p.R336C 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 18 48255762 48255762 G A MAPK4 Silent p.S434S 0.10 TCGA-WS-AB45-01 18 59221651 59221651 G A CDH20 Missense_Mutation p.R710H 0.18 deleterious(0.04) probably_damaging(0.966) TCGA-WS-AB45-01 18 60570392 60570392 T G PHLPP1 Silent p.S880S 0.08 TCGA-WS-AB45-01 18 60646031 60646031 C T PHLPP1 Silent p.S1507S 0.21 TCGA-WS-AB45-01 18 67994371 67994371 T - SOCS6 3'UTR 0.09 TCGA-WS-AB45-01 18 6873715 6873715 C T ARHGAP28 Missense_Mutation p.L226F 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 18 6961660 6961660 C T LAMA1 Silent p.T2517T 0.15 TCGA-WS-AB45-01 18 7012042 7012042 G A LAMA1 Silent p.S1153S 0.09 TCGA-WS-AB45-01 18 72114489 72114489 G A FAM69C Silent p.A76A 0.09 TCGA-WS-AB45-01 18 72223643 72223643 C T CNDP1 Missense_Mutation p.P32L 0.15 deleterious(0) benign(0.003) TCGA-WS-AB45-01 18 72775833 72775833 C T ZNF407 Silent p.A2052A 0.09 TCGA-WS-AB45-01 18 73000087 73000087 C T TSHZ1 Missense_Mutation p.R864W 0.17 deleterious(0.02) probably_damaging(0.973) TCGA-WS-AB45-01 18 74700260 74700260 C T RP11-862L9.3 3'Flank 0.19 TCGA-WS-AB45-01 18 74962552 74962552 G A GALR1 Silent p.P16P 0.26 TCGA-WS-AB45-01 18 77659522 77659522 C T KCNG2 Silent p.T369T 0.16 TCGA-WS-AB45-01 19 1004904 1004904 G A GRIN3B Silent p.A468A 0.21 TCGA-WS-AB45-01 19 1007861 1007861 C - GRIN3B Frame_Shift_Del p.K738Sfs*25 0.16 TCGA-WS-AB45-01 19 10085021 10085021 C T COL5A3 Missense_Mutation p.G1136R 0.26 probably_damaging(1) TCGA-WS-AB45-01 19 10205453 10205453 C T ANGPTL6 Silent p.A248A 0.18 TCGA-WS-AB45-01 19 10252789 10252789 C T DNMT1 Missense_Mutation p.R1075H 0.22 tolerated(0.06) benign(0.076) TCGA-WS-AB45-01 19 10369378 10369378 G T MRPL4 Intron 0.10 TCGA-WS-AB45-01 19 10403541 10403541 A G ICAM5 Silent p.L405L 0.13 TCGA-WS-AB45-01 19 10468706 10468706 C T TYK2 Missense_Mutation p.V762M 0.08 deleterious(0.02) possibly_damaging(0.634) TCGA-WS-AB45-01 19 1068451 1068451 C T HMHA1 Silent p.P59P 0.13 TCGA-WS-AB45-01 19 1079754 1079754 A G HMHA1 Missense_Mutation p.Q492R 0.12 tolerated(0.36) benign(0.076) TCGA-WS-AB45-01 19 1093958 1093958 G A POLR2E Silent p.T59T 0.19 TCGA-WS-AB45-01 19 11022965 11022965 G A CARM1 Missense_Mutation p.A222T 0.22 tolerated(0.07) possibly_damaging(0.464) TCGA-WS-AB45-01 19 1108325 1108325 G A SBNO2 Missense_Mutation p.A1332V 0.21 tolerated_low_confidence(0.33) benign(0) TCGA-WS-AB45-01 19 1116862 1116862 C T SBNO2 Missense_Mutation p.D590N 0.24 tolerated(0.23) benign(0.029) TCGA-WS-AB45-01 19 1122760 1122760 G A SBNO2 Missense_Mutation p.R271C 0.15 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 19 11277231 11277231 C T KANK2 3'UTR 0.17 TCGA-WS-AB45-01 19 12502558 12502558 C T ZNF799 Silent p.T218T 0.11 TCGA-WS-AB45-01 19 12739502 12739502 A - ZNF791 Frame_Shift_Del p.K388Nfs*10 0.15 TCGA-WS-AB45-01 19 12802246 12802246 G A FBXW9 Missense_Mutation p.A234V 0.12 deleterious(0.01) possibly_damaging(0.837) TCGA-WS-AB45-01 19 12902664 12902667 CTCT - JUNB Frame_Shift_Del p.S28Yfs*7 0.16 TCGA-WS-AB45-01 19 12903806 12903806 C - JUNB 3'UTR 0.10 TCGA-WS-AB45-01 19 12923928 12923928 C T RNASEH2A Silent p.H223H 0.12 TCGA-WS-AB45-01 19 12958869 12958869 G A MAST1 Missense_Mutation p.D258N 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-WS-AB45-01 19 12984936 12984936 C T MAST1 Missense_Mutation p.A1322V 0.19 tolerated_low_confidence(0.11) benign(0.001) TCGA-WS-AB45-01 19 13246306 13246306 C T NACC1 Silent p.G95G 0.14 TCGA-WS-AB45-01 19 13318609 13318609 C T CACNA1A Missense_Mutation p.E2347K 0.16 possibly_damaging(0.502) TCGA-WS-AB45-01 19 13325133 13325133 C T CACNA1A Missense_Mutation p.V1952M 0.31 possibly_damaging(0.791) TCGA-WS-AB45-01 19 14030745 14030745 A G CC2D1A Missense_Mutation p.E446G 0.13 deleterious(0) benign(0.14) TCGA-WS-AB45-01 19 14071285 14071285 T A DCAF15 Missense_Mutation p.V547D 0.15 deleterious(0) probably_damaging(0.916) TCGA-WS-AB45-01 19 14208227 14208227 C T PRKACA Silent p.P237P 0.14 TCGA-WS-AB45-01 19 14269990 14269990 C T LPHN1 Silent p.V692V 0.17 TCGA-WS-AB45-01 19 14273971 14273971 G A LPHN1 Silent p.Y219Y 0.11 TCGA-WS-AB45-01 19 14582572 14582572 C T PKN1 Silent p.F941F 0.09 TCGA-WS-AB45-01 19 1466271 1466271 C T APC2 Missense_Mutation p.R991C 0.15 benign(0.004) TCGA-WS-AB45-01 19 14674029 14674029 C T TECR Silent p.H26H 0.12 TCGA-WS-AB45-01 19 14736411 14736411 C A EMR3 Missense_Mutation p.V605F 0.17 deleterious(0) possibly_damaging(0.755) TCGA-WS-AB45-01 19 1487614 1487614 C T PCSK4 Missense_Mutation p.A224T 0.13 deleterious(0.01) benign(0.23) TCGA-WS-AB45-01 19 14876208 14876208 G A EMR2 Missense_Mutation p.T277M 0.17 tolerated(0.07) benign(0.03) TCGA-WS-AB45-01 19 1495328 1495328 G A REEP6 Missense_Mutation p.G51S 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-WS-AB45-01 19 14992095 14992095 G A OR7A17 Missense_Mutation p.P25S 0.07 tolerated_low_confidence(0.07) benign(0.046) TCGA-WS-AB45-01 19 15061191 15061191 C T SLC1A6 Missense_Mutation p.R504H 0.09 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 19 1511035 1511035 C A ADAMTSL5 5'UTR 0.17 TCGA-WS-AB45-01 19 15166248 15166248 C T CASP14 Silent p.I176I 0.09 TCGA-WS-AB45-01 19 15271991 15271991 G A NOTCH3 Missense_Mutation p.R2150C 0.10 deleterious(0.05) possibly_damaging(0.807) TCGA-WS-AB45-01 19 15471682 15471682 C T AKAP8 Missense_Mutation p.V502M 0.19 tolerated(0.29) benign(0.149) TCGA-WS-AB45-01 19 15479120 15479120 G A AKAP8 Silent p.D362D 0.21 TCGA-WS-AB45-01 19 15514355 15514355 C T AKAP8L Missense_Mutation p.R98H 0.11 deleterious(0) benign(0.027) TCGA-WS-AB45-01 19 1555427 1555427 G A MEX3D 3'UTR 0.17 TCGA-WS-AB45-01 19 15564144 15564144 T C RASAL3 Missense_Mutation p.Q815R 0.27 deleterious(0.03) benign(0.169) TCGA-WS-AB45-01 19 15575018 15575018 C T RASAL3 Missense_Mutation p.S51N 0.10 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 19 15586849 15586849 G T PGLYRP2 Missense_Mutation p.P211Q 0.25 deleterious(0.01) probably_damaging(0.937) TCGA-WS-AB45-01 19 15806865 15806865 G A CYP4F12 Missense_Mutation p.R412Q 0.07 deleterious(0.01) possibly_damaging(0.719) TCGA-WS-AB45-01 19 16437716 16437716 G T KLF2 Silent p.A314A 0.14 TCGA-WS-AB45-01 19 17038859 17038859 G A CPAMD8 Silent p.G1157G 0.15 TCGA-WS-AB45-01 19 17108078 17108078 C T CPAMD8 Missense_Mutation p.R360Q 0.20 tolerated(0.07) benign(0.244) TCGA-WS-AB45-01 19 17111331 17111331 A G CPAMD8 Missense_Mutation p.Y301H 0.14 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 19 17303723 17303723 C T MYO9B Missense_Mutation p.R994W 0.14 tolerated(0.14) possibly_damaging(0.773) TCGA-WS-AB45-01 19 17441287 17441287 C T ANO8 Silent p.T340T 0.22 TCGA-WS-AB45-01 19 17611526 17611526 G A SLC27A1 Missense_Mutation p.V493M 0.10 tolerated(0.06) benign(0.14) TCGA-WS-AB45-01 19 1775346 1775346 A G ONECUT3 Missense_Mutation p.M463V 0.09 deleterious(0.01) possibly_damaging(0.748) TCGA-WS-AB45-01 19 17972951 17972951 C T RPL18A Missense_Mutation p.R83C 0.14 deleterious(0.05) possibly_damaging(0.528) TCGA-WS-AB45-01 19 18104304 18104304 G A KCNN1 Missense_Mutation p.R438Q 0.17 deleterious(0) possibly_damaging(0.826) TCGA-WS-AB45-01 19 1818563 1818563 G A REXO1 Silent p.T978T 0.16 TCGA-WS-AB45-01 19 18254631 18254631 C T MAST3 Missense_Mutation p.R771W 0.20 deleterious(0.01) possibly_damaging(0.453) TCGA-WS-AB45-01 19 18685729 18685729 T G UBA52 Silent p.P80P 0.14 TCGA-WS-AB45-01 19 18731284 18731284 T C TMEM59L Missense_Mutation p.S323P 0.18 tolerated(0.22) benign(0.003) TCGA-WS-AB45-01 19 18870841 18870841 A - CRTC1 Frame_Shift_Del p.N247Tfs*5 0.11 TCGA-WS-AB45-01 19 18981157 18981157 G A GDF1 5'UTR 0.14 TCGA-WS-AB45-01 19 18989724 18989724 C T CERS1 Intron 0.10 TCGA-WS-AB45-01 19 19017878 19017878 C T COPE Missense_Mutation p.V112M 0.22 tolerated(0.09) benign(0.057) TCGA-WS-AB45-01 19 19105896 19105896 T C SUGP2 Intron 0.12 TCGA-WS-AB45-01 19 19115345 19115345 C T SUGP2 Missense_Mutation p.G854D 0.15 tolerated(0.18) benign(0.075) TCGA-WS-AB45-01 19 19216512 19216512 G A SLC25A42 Missense_Mutation p.G119D 0.17 deleterious(0.02) probably_damaging(0.916) TCGA-WS-AB45-01 19 19416687 19416687 T A SUGP1 Missense_Mutation p.E170V 0.09 deleterious(0) benign(0.391) TCGA-WS-AB45-01 19 19626291 19626291 G A TSSK6 5'UTR 0.19 TCGA-WS-AB45-01 19 1986415 1986415 C G BTBD2 3'UTR 0.14 TCGA-WS-AB45-01 19 2042020 2042020 T C MKNK2 Missense_Mutation p.E255G 0.23 deleterious(0) possibly_damaging(0.744) TCGA-WS-AB45-01 19 20808338 20808338 T - ZNF626 Frame_Shift_Del p.G116Dfs*3 0.09 TCGA-WS-AB45-01 19 20976705 20976705 A G ZNF66 Intron 0.24 TCGA-WS-AB45-01 19 2114807 2114807 C T AP3D1 Missense_Mutation p.S788N 0.10 tolerated(0.06) probably_damaging(0.967) TCGA-WS-AB45-01 19 2222036 2222037 CA - DOT1L Frame_Shift_Del p.P958Wfs*9 0.11 TCGA-WS-AB45-01 19 2276411 2276411 C T C19orf35 Silent p.L230L 0.25 TCGA-WS-AB45-01 19 2278851 2278851 C T C19orf35 Missense_Mutation p.G115D 0.20 tolerated(0.25) benign(0.229) TCGA-WS-AB45-01 19 22847499 22847499 G A ZNF492 Missense_Mutation p.G343D 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-WS-AB45-01 19 22848119 22848119 G T ZNF492 3'UTR 0.21 TCGA-WS-AB45-01 19 2290808 2290808 A G LINGO3 Missense_Mutation p.L323P 0.18 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 19 2334652 2334652 G A AC004410.3 3'Flank 0.16 TCGA-WS-AB45-01 19 23836600 23836600 G A ZNF675 Nonsense_Mutation p.R379* 0.12 TCGA-WS-AB45-01 19 24288808 24288808 G A ZNF254 Missense_Mutation p.A33T 0.12 tolerated(0.07) possibly_damaging(0.708) TCGA-WS-AB45-01 19 2733328 2733328 G A SLC39A3 Silent p.N122N 0.12 TCGA-WS-AB45-01 19 2733356 2733356 G A SLC39A3 Missense_Mutation p.P113L 0.13 deleterious(0.01) probably_damaging(0.97) TCGA-WS-AB45-01 19 30020818 30020818 G A VSTM2B Silent p.S130S 0.17 TCGA-WS-AB45-01 19 30166332 30166332 C - PLEKHF1 3'UTR 0.12 TCGA-WS-AB45-01 19 306681 306681 G A MIER2 3'UTR 0.12 TCGA-WS-AB45-01 19 307133 307133 C T MIER2 Silent p.S534S 0.10 TCGA-WS-AB45-01 19 30934917 30934917 C T ZNF536 Missense_Mutation p.R150C 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-WS-AB45-01 19 30936458 30936458 G A ZNF536 Silent p.G663G 0.11 TCGA-WS-AB45-01 19 3151732 3151732 C T GNA15 Silent p.T171T 0.11 TCGA-WS-AB45-01 19 31767616 31767617 - T TSHZ3 Frame_Shift_Ins p.M1028Nfs*30 0.13 TCGA-WS-AB45-01 19 31767783 31767783 G A TSHZ3 Silent p.G972G 0.14 TCGA-WS-AB45-01 19 33334837 33334837 C T SLC7A9 Missense_Mutation p.R333Q 0.08 deleterious(0.01) probably_damaging(0.955) TCGA-WS-AB45-01 19 33666370 33666370 C T WDR88 Silent p.C437C 0.12 TCGA-WS-AB45-01 19 3496605 3496605 C T DOHH Missense_Mutation p.A70T 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 19 34983954 34983954 G A WTIP Missense_Mutation p.R261H 0.14 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 19 35434304 35434304 A - ZNF30 Frame_Shift_Del p.K147Nfs*97 0.14 TCGA-WS-AB45-01 19 35610131 35610131 C T FXYD3 Nonsense_Mutation p.R45* 0.16 TCGA-WS-AB45-01 19 36034646 36034647 - C GAPDHS Frame_Shift_Ins p.Y327Lfs*26 0.12 TCGA-WS-AB45-01 19 36206192 36206192 T G ZBTB32 Missense_Mutation p.S222A 0.20 tolerated_low_confidence(0.07) benign(0.097) TCGA-WS-AB45-01 19 36214858 36214858 C T KMT2B Missense_Mutation p.S1095L 0.14 possibly_damaging(0.885) TCGA-WS-AB45-01 19 36217155 36217155 C T KMT2B Missense_Mutation p.R1302C 0.16 probably_damaging(0.993) TCGA-WS-AB45-01 19 36243970 36243970 C A LIN37 Intron 0.15 TCGA-WS-AB45-01 19 3643335 3643337 CTT - PIP5K1C In_Frame_Del p.E518del 0.12 TCGA-WS-AB45-01 19 36517056 36517056 G A CLIP3 Missense_Mutation p.A225V 0.28 tolerated(0.07) benign(0.063) TCGA-WS-AB45-01 19 3747947 3747947 G - TJP3 Frame_Shift_Del p.Y839Tfs*64 0.11 TCGA-WS-AB45-01 19 37904168 37904168 T - ZNF569 Frame_Shift_Del p.K464Nfs*78 0.10 TCGA-WS-AB45-01 19 38028564 38028564 G T ZNF793 Missense_Mutation p.G335V 0.30 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.14 TCGA-WS-AB45-01 19 3831780 3831780 G A ZFR2 Missense_Mutation p.A159V 0.07 tolerated(0.43) benign(0.07) TCGA-WS-AB45-01 19 38591782 38591782 G A SIPA1L3 Missense_Mutation p.A649T 0.33 deleterious(0) probably_damaging(0.981) TCGA-WS-AB45-01 19 38696821 38696821 G A SIPA1L3 Missense_Mutation p.A1763T 0.17 tolerated(0.05) possibly_damaging(0.754) TCGA-WS-AB45-01 19 38799953 38799953 G T YIF1B Missense_Mutation p.P105T 0.27 tolerated(0.16) benign(0.37) TCGA-WS-AB45-01 19 38875109 38875109 G A GGN Silent p.S634S 0.15 TCGA-WS-AB45-01 19 38876089 38876089 G A GGN Missense_Mutation p.R605C 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WS-AB45-01 19 38877532 38877532 G A GGN Missense_Mutation p.R124C 0.28 deleterious_low_confidence(0) unknown(0) TCGA-WS-AB45-01 19 38993213 38993213 C T RYR1 Missense_Mutation p.L2561F 0.14 benign(0.198) TCGA-WS-AB45-01 19 39398198 39398198 G A NFKBIB Missense_Mutation p.A290T 0.19 tolerated(0.19) possibly_damaging(0.542) TCGA-WS-AB45-01 19 39589225 39589225 C T PAPL Silent p.D83D 0.17 TCGA-WS-AB45-01 19 3979990 3979990 C T EEF2 Missense_Mutation p.G474D 0.21 deleterious(0.01) possibly_damaging(0.738) TCGA-WS-AB45-01 19 39805512 39805512 C T LRFN1 Silent p.A155A 0.37 TCGA-WS-AB45-01 19 39876707 39876707 C T PAF1 Missense_Mutation p.S507N 0.09 tolerated_low_confidence(0.11) unknown(0) TCGA-WS-AB45-01 19 39876728 39876728 G A PAF1 Missense_Mutation p.A500V 0.13 tolerated_low_confidence(0.11) unknown(0) TCGA-WS-AB45-01 19 39962139 39962139 A G SUPT5H Missense_Mutation p.H607R 0.22 deleterious(0) probably_damaging(0.943) TCGA-WS-AB45-01 19 39962285 39962285 C T SUPT5H Missense_Mutation p.A622V 0.11 tolerated(0.28) benign(0.241) TCGA-WS-AB45-01 19 40009541 40009543 AGG - SELV Splice_Site p.X298_splice 0.26 TCGA-WS-AB45-01 19 40321165 40321165 C T DYRK1B Silent p.A74A 0.16 TCGA-WS-AB45-01 19 4033108 4033108 G T PIAS4 Missense_Mutation p.K306N 0.31 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 19 40392639 40392639 T G FCGBP Missense_Mutation p.E2622A 0.05 benign(0.001) TCGA-WS-AB45-01 19 40398276 40398276 C T FCGBP Missense_Mutation p.G2231R 0.38 probably_damaging(0.956) TCGA-WS-AB45-01 19 40399792 40399792 G A FCGBP Missense_Mutation p.P1968L 0.18 probably_damaging(0.913) TCGA-WS-AB45-01 19 40421617 40421617 C T FCGBP Silent p.P768P 0.11 TCGA-WS-AB45-01 19 4047884 4047884 C T ZBTB7A Missense_Mutation p.E541K 0.17 deleterious_low_confidence(0.05) benign(0.006) TCGA-WS-AB45-01 19 4099215 4099215 G - MAP2K2 Frame_Shift_Del p.R303Afs*24 0.12 TCGA-WS-AB45-01 19 41074125 41074125 G A SPTBN4 Missense_Mutation p.R2298Q 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.614) TCGA-WS-AB45-01 19 41086827 41086827 G A SHKBP1 Missense_Mutation p.G277S 0.17 tolerated(1) benign(0) TCGA-WS-AB45-01 19 41089557 41089557 G A SHKBP1 Missense_Mutation p.E367K 0.32 deleterious(0) probably_damaging(0.969) TCGA-WS-AB45-01 19 41312486 41312486 C T EGLN2 Silent p.N290N 0.13 TCGA-WS-AB45-01 19 41522657 41522657 C T CYP2B6 Silent p.D467D 0.12 TCGA-WS-AB45-01 19 4175128 4175128 G A SIRT6 Missense_Mutation p.T212M 0.12 deleterious(0.05) probably_damaging(0.951) TCGA-WS-AB45-01 19 4180879 4180879 G A SIRT6 Missense_Mutation p.R32W 0.14 deleterious(0.02) benign(0.004) TCGA-WS-AB45-01 19 41928240 41928240 C T BCKDHA Missense_Mutation p.T273M 0.13 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 19 41929038 41929038 G A BCKDHA Silent p.E377E 0.21 TCGA-WS-AB45-01 19 41931984 41931984 G A B3GNT8 Missense_Mutation p.R234C 0.15 deleterious(0.04) possibly_damaging(0.745) TCGA-WS-AB45-01 19 4224553 4224553 C - ANKRD24 3'UTR 0.11 TCGA-WS-AB45-01 19 42492726 42492726 C T ATP1A3 Missense_Mutation p.A12T 0.23 tolerated_low_confidence(0.1) probably_damaging(0.981) TCGA-WS-AB45-01 19 4251032 4251032 C T CCDC94 Missense_Mutation p.T45M 0.16 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 19 42603928 42603928 C A POU2F2 Missense_Mutation p.G117C 0.18 deleterious(0) probably_damaging(0.914) TCGA-WS-AB45-01 19 42703791 42703791 G A DEDD2 Silent p.D260D 0.11 TCGA-WS-AB45-01 19 42753368 42753368 C - ERF Frame_Shift_Del p.G299Efs*12 0.16 TCGA-WS-AB45-01 19 42754051 42754051 G A ERF Missense_Mutation p.R101W 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 19 42817598 42817598 C - TMEM145 Frame_Shift_Del p.R26Afs*20 0.18 TCGA-WS-AB45-01 19 42821926 42821926 G A TMEM145 Silent p.L322L 0.15 TCGA-WS-AB45-01 19 42821975 42821975 C T TMEM145 Nonsense_Mutation p.R339* 0.13 TCGA-WS-AB45-01 19 42873861 42873861 C T MEGF8 Missense_Mutation p.R2207C 0.22 deleterious(0.01) possibly_damaging(0.655) TCGA-WS-AB45-01 19 42906113 42906113 T C LIPE Missense_Mutation p.T1028A 0.13 deleterious(0.01) benign(0.158) TCGA-WS-AB45-01 19 42931259 42931259 G A LIPE Missense_Mutation p.P15S 0.19 tolerated_low_confidence(0.08) benign(0.335) TCGA-WS-AB45-01 19 43237030 43237030 A C PSG3 Missense_Mutation p.F205L 0.18 tolerated(0.69) benign(0.012) TCGA-WS-AB45-01 19 43237056 43237056 T C PSG3 Missense_Mutation p.K197E 0.17 tolerated(1) benign(0.006) TCGA-WS-AB45-01 19 43237077 43237077 T A PSG3 Missense_Mutation p.T190S 0.15 tolerated(1) benign(0.02) TCGA-WS-AB45-01 19 43529025 43529025 A G PSG11 Missense_Mutation p.V83A 0.11 tolerated(0.21) benign(0.175) TCGA-WS-AB45-01 19 4433108 4433108 G A CHAF1A Missense_Mutation p.G749R 0.20 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 19 4445412 4445412 C T UBXN6 3'UTR 0.27 TCGA-WS-AB45-01 19 44501541 44501541 C T ZNF155 Missense_Mutation p.P522L 0.25 deleterious(0.02) benign(0.059) TCGA-WS-AB45-01 19 44739631 44739631 A G ZNF227 Missense_Mutation p.K350E 0.15 tolerated(0.11) probably_damaging(0.984) TCGA-WS-AB45-01 19 44832469 44832469 C T ZNF112 Missense_Mutation p.R620Q 0.10 tolerated(0.98) probably_damaging(0.988) TCGA-WS-AB45-01 19 45017272 45017272 G T CEACAM20 RNA 0.22 TCGA-WS-AB45-01 19 45127173 45127173 C T IGSF23 Nonsense_Mutation p.R99* 0.33 TCGA-WS-AB45-01 19 45261559 45261559 G A BCL3 Silent p.A316A 0.22 TCGA-WS-AB45-01 19 45375296 45375296 G A PVRL2 Missense_Mutation p.R222H 0.18 tolerated(0.54) benign(0.258) TCGA-WS-AB45-01 19 45385581 45385581 C T PVRL2 Missense_Mutation p.R386W 0.29 deleterious(0) possibly_damaging(0.724) TCGA-WS-AB45-01 19 45494612 45494612 C T CLPTM1 Silent p.Y512Y 0.28 TCGA-WS-AB45-01 19 45515237 45515237 C T RELB Silent p.D69D 0.17 TCGA-WS-AB45-01 19 45540718 45540718 C T RELB Silent p.T470T 0.14 TCGA-WS-AB45-01 19 45575142 45575142 C T ZNF296 Missense_Mutation p.R382H 0.30 tolerated(0.18) probably_damaging(0.994) TCGA-WS-AB45-01 19 45575653 45575653 G A ZNF296 Missense_Mutation p.P212S 0.07 tolerated(0.25) benign(0.001) TCGA-WS-AB45-01 19 45593681 45593681 C T GEMIN7 Silent p.Y103Y 0.27 TCGA-WS-AB45-01 19 45805709 45805709 C T MARK4 Missense_Mutation p.S667L 0.10 deleterious(0.01) benign(0.042) TCGA-WS-AB45-01 19 45849020 45849020 C T KLC3 Missense_Mutation p.S74L 0.16 deleterious(0.02) benign(0.101) TCGA-WS-AB45-01 19 45864852 45864852 G A ERCC2 Silent p.T389T 0.09 TCGA-WS-AB45-01 19 46024588 46024588 C - VASP Frame_Shift_Del p.P119Lfs*34 0.14 TCGA-WS-AB45-01 19 46178230 46178230 G T GIPR Intron 0.11 TCGA-WS-AB45-01 19 46185441 46185443 AGG - GIPR 3'UTR 0.40 TCGA-WS-AB45-01 19 46215506 46215506 C T FBXO46 Silent p.P416P 0.08 TCGA-WS-AB45-01 19 46303726 46303726 C - RSPH6A Frame_Shift_Del p.A632Pfs*47 0.19 TCGA-WS-AB45-01 19 46376481 46376481 G T FOXA3 3'UTR 0.29 TCGA-WS-AB45-01 19 46387368 46387368 G A IRF2BP1 Silent p.V555V 0.11 TCGA-WS-AB45-01 19 46393721 46393721 C - MYPOP 3'UTR 0.44 TCGA-WS-AB45-01 19 46997050 46997050 C T PNMAL2 Missense_Mutation p.R558H 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-WS-AB45-01 19 46997064 46997064 G T PNMAL2 Silent p.T553T 0.16 TCGA-WS-AB45-01 19 47124384 47124384 C T PTGIR 3'UTR 0.28 TCGA-WS-AB45-01 19 47280352 47280352 G A SLC1A5 Missense_Mutation p.A423V 0.09 deleterious(0.04) probably_damaging(1) TCGA-WS-AB45-01 19 47572412 47572412 C G ZC3H4 Missense_Mutation p.E779Q 0.17 unknown(0) TCGA-WS-AB45-01 19 47778571 47778571 C T PRR24 Missense_Mutation p.T132M 0.10 deleterious_low_confidence(0) unknown(0) TCGA-WS-AB45-01 19 4793005 4793005 G A FEM1A Missense_Mutation p.R380H 0.10 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 19 47960475 47960475 G A SLC8A2 Missense_Mutation p.A351V 0.06 deleterious(0) benign(0.091) TCGA-WS-AB45-01 19 47960841 47960841 G - SLC8A2 Frame_Shift_Del p.A229Gfs*3 0.11 TCGA-WS-AB45-01 19 48034954 48034954 C - ZNF541 Frame_Shift_Del p.G1136Afs*52 0.11 TCGA-WS-AB45-01 19 48049094 48049094 G - ZNF541 Frame_Shift_Del p.P231Rfs*49 0.10 TCGA-WS-AB45-01 19 4817081 4817081 C T TICAM1 Missense_Mutation p.G437R 0.09 deleterious(0.01) possibly_damaging(0.831) TCGA-WS-AB45-01 19 4847866 4847866 G A PLIN3 Missense_Mutation p.A224V 0.22 tolerated(0.18) benign(0.432) TCGA-WS-AB45-01 19 48542482 48542482 G A CABP5 Missense_Mutation p.R111W 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 19 4859953 4859953 C A PLIN3 Missense_Mutation p.K50N 0.13 deleterious(0) probably_damaging(0.949) TCGA-WS-AB45-01 19 48640944 48640944 A G LIG1 Silent p.G363G 0.16 TCGA-WS-AB45-01 19 48643383 48643383 G A LIG1 Missense_Mutation p.T311M 0.37 tolerated(0.1) probably_damaging(0.96) TCGA-WS-AB45-01 19 48664627 48664627 A G LIG1 Splice_Site p.X81_splice 0.24 TCGA-WS-AB45-01 19 48815354 48815354 C T CCDC114 Missense_Mutation p.R90Q 0.13 tolerated(0.06) probably_damaging(0.923) TCGA-WS-AB45-01 19 48845889 48845889 C T TMEM143 Silent p.A291A 0.14 TCGA-WS-AB45-01 19 48846624 48846624 C T TMEM143 Missense_Mutation p.V217M 0.27 tolerated(0.06) probably_damaging(0.971) TCGA-WS-AB45-01 19 48887616 48887616 G A KDELR1 Missense_Mutation p.R159C 0.25 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 19 49000740 49000740 C - LMTK3 Frame_Shift_Del p.D1225Tfs*120 0.11 TCGA-WS-AB45-01 19 49000792 49000792 G A LMTK3 Silent p.P1207P 0.25 TCGA-WS-AB45-01 19 49012756 49012756 G - LMTK3 Frame_Shift_Del p.L155Wfs*8 0.20 TCGA-WS-AB45-01 19 4902846 4902846 G - ARRDC5 Frame_Shift_Del p.Q12Nfs*7 0.10 TCGA-WS-AB45-01 19 49131311 49131311 C T SPHK2 Silent p.D247D 0.32 TCGA-WS-AB45-01 19 49174076 49174076 G A NTN5 Silent p.G56G 0.10 TCGA-WS-AB45-01 19 49253587 49253587 C T FUT1 Missense_Mutation p.A318T 0.10 tolerated(0.25) benign(0.255) TCGA-WS-AB45-01 19 49339739 49339739 G A HSD17B14 5'UTR 0.20 TCGA-WS-AB45-01 19 49489228 49489228 A G GYS1 Missense_Mutation p.V186A 0.17 tolerated(0.12) benign(0.089) TCGA-WS-AB45-01 19 4950626 4950626 G A UHRF1 RNA 0.19 TCGA-WS-AB45-01 19 49573850 49573850 G A KCNA7 Nonsense_Mutation p.R281* 0.22 TCGA-WS-AB45-01 19 50154608 50154608 G A SCAF1 Missense_Mutation p.R321H 0.12 unknown(0) TCGA-WS-AB45-01 19 50156355 50156355 G T SCAF1 Missense_Mutation p.K903N 0.14 unknown(0) TCGA-WS-AB45-01 19 50161024 50161024 A G SCAF1 Missense_Mutation p.K1209E 0.29 probably_damaging(0.98) TCGA-WS-AB45-01 19 50195521 50195521 G A CPT1C Silent p.A4A 0.27 TCGA-WS-AB45-01 19 50295270 50295270 C T AP2A1 Silent p.P184P 0.09 TCGA-WS-AB45-01 19 50312729 50312729 G A FUZ Missense_Mutation p.T199M 0.14 tolerated(0.27) benign(0.003) TCGA-WS-AB45-01 19 50333113 50333113 C - MED25 Frame_Shift_Del p.P201Rfs*13 0.11 TCGA-WS-AB45-01 19 50335586 50335586 C T MED25 Missense_Mutation p.R466W 0.15 deleterious(0) probably_damaging(0.985) TCGA-WS-AB45-01 19 50399102 50399102 G A IL4I1 Silent p.A96A 0.18 TCGA-WS-AB45-01 19 50462682 50462682 C T SIGLEC11 Missense_Mutation p.R331H 0.31 tolerated(0.11) benign(0.146) TCGA-WS-AB45-01 19 50826330 50826330 C - KCNC3 Frame_Shift_Del p.G627Efs*27 0.25 TCGA-WS-AB45-01 19 50885793 50885793 C T NR1H2 Silent p.F439F 0.21 TCGA-WS-AB45-01 19 50905630 50905630 G A POLD1 Missense_Mutation p.R253Q 0.17 deleterious(0) probably_damaging(0.982) TCGA-WS-AB45-01 19 50979166 50979166 C T FAM71E1 Missense_Mutation p.R95Q 0.16 tolerated(0.18) benign(0.016) TCGA-WS-AB45-01 19 50979529 50979529 T G FAM71E1 Silent p.T39T 0.26 TCGA-WS-AB45-01 19 51009288 51009288 C T JOSD2 3'UTR 0.23 TCGA-WS-AB45-01 19 51228470 51228470 C T CLEC11A Silent p.L240L 0.16 TCGA-WS-AB45-01 19 51509868 51509868 G A KLK9 Silent p.S104S 0.12 TCGA-WS-AB45-01 19 51728758 51728758 G A CD33 Missense_Mutation p.A108T 0.09 deleterious(0.04) benign(0.312) TCGA-WS-AB45-01 19 51729092 51729092 G A CD33 Missense_Mutation p.G151D 0.24 tolerated(0.05) benign(0.212) TCGA-WS-AB45-01 19 51870769 51870771 GAC - CLDND2 In_Frame_Del p.V124del 0.14 TCGA-WS-AB45-01 19 51919935 51919935 G A SIGLEC10 Nonsense_Mutation p.R231* 0.31 TCGA-WS-AB45-01 19 52034861 52034861 C T SIGLEC6 Silent p.P14P 0.15 TCGA-WS-AB45-01 19 52376554 52376554 A G ZNF577 Missense_Mutation p.M230T 0.26 tolerated(0.75) benign(0.003) TCGA-WS-AB45-01 19 52448903 52448903 G A ZNF613 Silent p.A589A 0.20 TCGA-WS-AB45-01 19 52468353 52468353 C T ZNF350 Missense_Mutation p.M451I 0.32 tolerated(0.45) benign(0) TCGA-WS-AB45-01 19 52909228 52909228 G A ZNF528 Silent p.A28A 0.09 TCGA-WS-AB45-01 19 52920009 52920010 - GC ZNF528 3'UTR 0.19 TCGA-WS-AB45-01 19 53209935 53209935 G T ZNF611 Missense_Mutation p.L125I 0.23 tolerated(0.05) benign(0.042) TCGA-WS-AB45-01 19 53383784 53383784 G A ZNF320 3'UTR 0.11 TCGA-WS-AB45-01 19 53384139 53384139 C T ZNF320 Missense_Mutation p.E414K 0.19 tolerated(1) benign(0) TCGA-WS-AB45-01 19 53958055 53958055 A G ZNF761 RNA 0.08 TCGA-WS-AB45-01 19 54074955 54074955 T C ZNF331 Missense_Mutation p.L36P 0.08 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 19 54169961 54169961 G A MIR512-1 RNA 0.13 TCGA-WS-AB45-01 19 54251912 54251912 G T MIR521-1 RNA 0.26 TCGA-WS-AB45-01 19 54376951 54376951 C T MYADM Silent p.S56S 0.12 TCGA-WS-AB45-01 19 54378971 54378971 C T MYADM 3'UTR 0.11 TCGA-WS-AB45-01 19 54379566 54379566 T A MYADM 3'UTR 0.19 TCGA-WS-AB45-01 19 54409643 54409643 T - PRKCG Frame_Shift_Del p.F614Sfs*41 0.15 TCGA-WS-AB45-01 19 54410274 54410275 - C PRKCG 3'UTR 0.13 TCGA-WS-AB45-01 19 54573272 54573272 G T TARM1 Silent p.A267A 0.07 TCGA-WS-AB45-01 19 54603061 54603061 A G OSCAR Silent p.C16C 0.09 TCGA-WS-AB45-01 19 54656698 54656698 T C CNOT3 Missense_Mutation p.S667P 0.18 tolerated(0.08) benign(0.025) TCGA-WS-AB45-01 19 54660710 54660710 C T LENG1 Silent p.A122A 0.18 TCGA-WS-AB45-01 19 54662150 54662150 G T LENG1 Missense_Mutation p.P61H 0.19 tolerated(0.07) probably_damaging(0.937) TCGA-WS-AB45-01 19 54721269 54721269 G T LILRB3 Silent p.A557A 0.12 TCGA-WS-AB45-01 19 54818612 54818612 C A LILRA5 3'UTR 0.33 TCGA-WS-AB45-01 19 54818782 54818782 G A LILRA5 Silent p.A272A 0.30 TCGA-WS-AB45-01 19 549075 549075 C A GZMM Missense_Mutation p.L168I 0.11 tolerated(0.09) benign(0.21) TCGA-WS-AB45-01 19 55143122 55143122 G A LILRB1 Missense_Mutation p.G81D 0.09 deleterious(0.01) benign(0.018) TCGA-WS-AB45-01 19 55435008 55435008 A G NLRP7 3'UTR 0.31 TCGA-WS-AB45-01 19 55451270 55451270 A G NLRP7 Missense_Mutation p.L306P 0.10 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 19 55494974 55494974 C T NLRP2 Silent p.D636D 0.14 TCGA-WS-AB45-01 19 55570524 55570524 C T RDH13 Splice_Site p.X62_splice 0.12 TCGA-WS-AB45-01 19 55604434 55604434 C T PPP1R12C Missense_Mutation p.R592Q 0.31 tolerated(0.26) benign(0.005) TCGA-WS-AB45-01 19 55686560 55686560 G A SYT5 Nonsense_Mutation p.Q230* 0.15 TCGA-WS-AB45-01 19 55690393 55690393 G - SYT5 Frame_Shift_Del p.P6Qfs*69 0.17 TCGA-WS-AB45-01 19 55785894 55785894 G A HSPBP1 Missense_Mutation p.T171M 0.14 deleterious(0.01) possibly_damaging(0.773) TCGA-WS-AB45-01 19 55854166 55854166 C T SUV420H2 Silent p.C111C 0.33 TCGA-WS-AB45-01 19 55857907 55857907 C T SUV420H2 Silent p.P249P 0.27 TCGA-WS-AB45-01 19 55865085 55865085 G A COX6B2 3'UTR 0.13 TCGA-WS-AB45-01 19 55871075 55871075 A G FAM71E2 Silent p.P387P 0.11 TCGA-WS-AB45-01 19 5592844 5592844 A G SAFB2 Silent p.Y754Y 0.16 TCGA-WS-AB45-01 19 56005995 56005995 T C SSC5D Missense_Mutation p.V411A 0.15 benign(0.039) TCGA-WS-AB45-01 19 56009494 56009494 C T SSC5D Silent p.S545S 0.09 TCGA-WS-AB45-01 19 56113645 56113646 - C ZNF524 Frame_Shift_Ins p.K59Qfs*31 0.14 TCGA-WS-AB45-01 19 56243862 56243862 A G NLRP9 Silent p.H445H 0.25 TCGA-WS-AB45-01 19 56244406 56244406 T - NLRP9 Frame_Shift_Del p.K264Rfs*12 0.22 TCGA-WS-AB45-01 19 56539187 56539187 C T NLRP5 Missense_Mutation p.R530C 0.14 tolerated(0.06) benign(0.003) TCGA-WS-AB45-01 19 57036657 57036657 G A ZNF471 Silent p.V407V 0.25 TCGA-WS-AB45-01 19 57286207 57286207 T A ZIM2 Missense_Mutation p.N478I 0.18 tolerated(0.23) benign(0.005) TCGA-WS-AB45-01 19 57640805 57640805 G C USP29 Missense_Mutation p.L254F 0.10 tolerated(0.07) probably_damaging(0.946) TCGA-WS-AB45-01 19 57742424 57742424 G A AURKC 5'Flank 0.26 TCGA-WS-AB45-01 19 5782995 5782995 C T PRR22 Silent p.P421P 0.10 TCGA-WS-AB45-01 19 57832178 57832178 A C ZNF543 5'UTR 0.14 TCGA-WS-AB45-01 19 58002864 58002864 C A ZNF419 Missense_Mutation p.A34D 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 19 58058734 58058734 C T ZNF550 Missense_Mutation p.R252Q 0.24 deleterious(0) benign(0.179) TCGA-WS-AB45-01 19 58131885 58131885 C T ZNF134 Missense_Mutation p.T133M 0.20 tolerated(0.19) benign(0.002) TCGA-WS-AB45-01 19 58145263 58145263 G A ZNF211 Intron 0.17 TCGA-WS-AB45-01 19 58421215 58421215 C T ZNF417 Missense_Mutation p.G144E 0.15 tolerated(0.17) possibly_damaging(0.847) TCGA-WS-AB45-01 19 58596139 58596139 G A ZSCAN18 Silent p.R538R 0.20 TCGA-WS-AB45-01 19 5867111 5867111 G A FUT5 Missense_Mutation p.A209V 0.19 tolerated(1) benign(0.007) TCGA-WS-AB45-01 19 58879111 58879111 G A ZNF837 Missense_Mutation p.A530V 0.26 tolerated(0.27) benign(0.021) TCGA-WS-AB45-01 19 59027763 59027763 C T ZBTB45 Silent p.S426S 0.17 TCGA-WS-AB45-01 19 5918644 5918644 G A RANBP3 Missense_Mutation p.R446W 0.18 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 19 615848 615848 G A HCN2 Missense_Mutation p.V682I 0.16 tolerated(0.05) benign(0.087) TCGA-WS-AB45-01 19 6213369 6213369 C A MLLT1 Silent p.R510R 0.14 TCGA-WS-AB45-01 19 6466540 6466540 G A CRB3 Missense_Mutation p.V74M 0.15 tolerated(0.1) probably_damaging(0.934) TCGA-WS-AB45-01 19 6470326 6470326 C T DENND1C Missense_Mutation p.V448I 0.17 deleterious(0.01) possibly_damaging(0.758) TCGA-WS-AB45-01 19 6750419 6750419 C T TRIP10 Silent p.S448S 0.06 TCGA-WS-AB45-01 19 7505029 7505029 C T ARHGEF18 Missense_Mutation p.A68V 0.15 tolerated_low_confidence(0.12) benign(0.035) TCGA-WS-AB45-01 19 7518544 7518544 C T ARHGEF18 Missense_Mutation p.R495W 0.07 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 19 758080 758080 C T MISP Silent p.P378P 0.16 TCGA-WS-AB45-01 19 7584679 7584679 G A ZNF358 Missense_Mutation p.C184Y 0.27 deleterious(0) possibly_damaging(0.652) TCGA-WS-AB45-01 19 7605084 7605084 A G PNPLA6 Missense_Mutation p.M211V 0.24 tolerated(0.14) possibly_damaging(0.709) TCGA-WS-AB45-01 19 7688658 7688658 A T XAB2 Missense_Mutation p.W360R 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 19 7987698 7987698 G A SNAPC2 3'UTR 0.14 TCGA-WS-AB45-01 19 8028282 8028282 G A ELAVL1 3'UTR 0.08 TCGA-WS-AB45-01 19 8486776 8486776 G A MARCH2 Missense_Mutation p.G18S 0.24 tolerated_low_confidence(0.39) benign(0.004) TCGA-WS-AB45-01 19 853022 853022 G A ELANE Missense_Mutation p.V72M 0.15 tolerated(0.27) benign(0.346) TCGA-WS-AB45-01 19 8555547 8555547 C T PRAM1 Missense_Mutation p.G613R 0.17 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 19 8563355 8563355 G - PRAM1 Frame_Shift_Del p.P446Lfs*32 0.13 TCGA-WS-AB45-01 19 8654415 8654415 G A ADAMTS10 Missense_Mutation p.T652M 0.19 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 19 900098 900098 C T R3HDM4 Missense_Mutation p.R175H 0.17 deleterious(0.01) probably_damaging(0.921) TCGA-WS-AB45-01 19 9047754 9047754 G A MUC16 Missense_Mutation p.P11293S 0.11 benign(0.032) TCGA-WS-AB45-01 19 9071179 9071179 C T MUC16 Missense_Mutation p.A5423T 0.11 unknown(0) TCGA-WS-AB45-01 19 9091249 9091250 - T MUC16 Frame_Shift_Ins p.I189Nfs*26 0.11 TCGA-WS-AB45-01 19 9296503 9296503 G A OR7D2 Missense_Mutation p.G16R 0.11 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-WS-AB45-01 19 9407097 9407097 A G ZNF699 Missense_Mutation p.I328T 0.11 tolerated(1) benign(0.228) TCGA-WS-AB45-01 19 9639823 9639823 G A ZNF426 Nonsense_Mutation p.R300* 0.10 TCGA-WS-AB45-01 19 9676731 9676733 GAA - ZNF121 In_Frame_Del p.S353del 0.09 TCGA-WS-AB45-01 19 9958768 9958768 G A PIN1 Missense_Mutation p.D112N 0.22 deleterious(0) probably_damaging(0.966) TCGA-WS-AB45-01 1 100152702 100152702 G T PALMD Missense_Mutation p.K157N 0.13 tolerated(0.06) benign(0.086) TCGA-WS-AB45-01 1 100318231 100318231 C T AGL Intron 0.15 TCGA-WS-AB45-01 1 10042466 10042466 C A NMNAT1 Missense_Mutation p.L183I 0.14 tolerated(0.12) benign(0.303) TCGA-WS-AB45-01 1 100464966 100464966 T A SLC35A3 Missense_Mutation p.Y113N 0.13 deleterious(0) probably_damaging(0.985) TCGA-WS-AB45-01 1 100550897 100550897 A G SASS6 Missense_Mutation p.L654S 0.11 deleterious(0.02) benign(0.1) TCGA-WS-AB45-01 1 101705495 101705495 C T S1PR1 Missense_Mutation p.R319C 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 1 10221221 10221221 C T UBE4B Silent p.R1025R 0.09 TCGA-WS-AB45-01 1 10339169 10339169 G A KIF1B Intron 0.15 TCGA-WS-AB45-01 1 103484403 103484403 C T COL11A1 Missense_Mutation p.E441K 0.12 probably_damaging(0.999) TCGA-WS-AB45-01 1 104114762 104114762 C T AMY2B Missense_Mutation p.H67Y 0.03 tolerated(0.57) benign(0) TCGA-WS-AB45-01 1 10431223 10431223 C T KIF1B Missense_Mutation p.R1571W 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-WS-AB45-01 1 109235198 109235198 T C PRPF38B 5'UTR 0.30 TCGA-WS-AB45-01 1 109301169 109301169 C T STXBP3 Missense_Mutation p.S99L 0.14 tolerated(0.51) benign(0.005) TCGA-WS-AB45-01 1 109351516 109351516 G A STXBP3 3'UTR 0.13 TCGA-WS-AB45-01 1 109704637 109704637 G A KIAA1324 Splice_Site p.X92_splice 0.10 TCGA-WS-AB45-01 1 109777906 109777906 G A SARS Silent p.Q274Q 0.08 TCGA-WS-AB45-01 1 109793599 109793599 G A CELSR2 Missense_Mutation p.E300K 0.19 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 1 109811375 109811375 C T CELSR2 Missense_Mutation p.T2164M 0.14 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 1 110022175 110022175 C - SYPL2 3'UTR 0.18 TCGA-WS-AB45-01 1 110170495 110170495 G A AMPD2 Silent p.V404V 0.10 TCGA-WS-AB45-01 1 110204101 110204101 T C GSTM4 3'UTR 0.25 TCGA-WS-AB45-01 1 11130959 11130959 C T EXOSC10 Missense_Mutation p.V772M 0.19 tolerated(0.25) benign(0.003) TCGA-WS-AB45-01 1 111957959 111957959 A G OVGP1 Silent p.S388S 0.21 TCGA-WS-AB45-01 1 112525203 112525203 C T KCND3 Missense_Mutation p.R49Q 0.15 tolerated(0.23) benign(0.292) TCGA-WS-AB45-01 1 11308060 11308060 C T MTOR Missense_Mutation p.R311H 0.17 deleterious(0.01) benign(0.003) TCGA-WS-AB45-01 1 11319400 11319400 G A MTOR Nonsense_Mutation p.Q23* 0.29 TCGA-WS-AB45-01 1 11345941 11345941 C T UBIAD1 Missense_Mutation p.S257F 0.11 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 1 114248713 114248713 A - PHTF1 Frame_Shift_Del p.P491Hfs*15 0.12 TCGA-WS-AB45-01 1 115604792 115604792 G A TSPAN2 Silent p.C78C 0.20 TCGA-WS-AB45-01 1 116206682 116206682 T - VANGL1 Frame_Shift_Del p.Y204Tfs*67 0.16 TCGA-WS-AB45-01 1 1164147 1164147 C T SDF4 Silent p.A9A 0.20 TCGA-WS-AB45-01 1 117632832 117632832 T C TTF2 Splice_Site p.X832_splice 0.14 TCGA-WS-AB45-01 1 117658251 117658251 G - TRIM45 Frame_Shift_Del p.K472Rfs*24 0.08 TCGA-WS-AB45-01 1 11847883 11847883 C A MTHFR 3'UTR 0.17 TCGA-WS-AB45-01 1 118539285 118539285 C A SPAG17 Missense_Mutation p.D1620Y 0.17 deleterious(0) possibly_damaging(0.771) TCGA-WS-AB45-01 1 120056702 120056702 C T HSD3B1 Nonsense_Mutation p.R186* 0.16 TCGA-WS-AB45-01 1 12024276 12024276 C T PLOD1 Missense_Mutation p.S416L 0.11 deleterious(0.02) benign(0.127) TCGA-WS-AB45-01 1 120502025 120502025 T C NOTCH2 Silent p.P672P 0.13 TCGA-WS-AB45-01 1 1245216 1245216 C - PUSL1 Frame_Shift_Del p.E212Rfs*26 0.12 TCGA-WS-AB45-01 1 1273707 1273707 C T DVL1 Silent p.T458T 0.06 TCGA-WS-AB45-01 1 1274712 1274712 G A DVL1 Intron 0.13 TCGA-WS-AB45-01 1 1289864 1289864 G A MXRA8 Silent p.N325N 0.07 TCGA-WS-AB45-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.11 TCGA-WS-AB45-01 1 1330797 1330797 C T CCNL2 Missense_Mutation p.V191I 0.12 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 1 1372677 1372677 C T VWA1 Silent p.S148S 0.17 TCGA-WS-AB45-01 1 14107076 14107076 C T PRDM2 Missense_Mutation p.P929L 0.20 benign(0.106) TCGA-WS-AB45-01 1 145039741 145039741 C T RN7SKP88 5'Flank 0.10 TCGA-WS-AB45-01 1 145492282 145492282 G A LIX1L Silent p.A168A 0.30 TCGA-WS-AB45-01 1 14925440 14925440 G A KAZN 5'UTR 0.21 TCGA-WS-AB45-01 1 14925617 14925617 G A KAZN Missense_Mutation p.G42S 0.18 tolerated(0.48) benign(0.001) TCGA-WS-AB45-01 1 149882135 149882135 C T SV2A Missense_Mutation p.R359H 0.25 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 1 149898454 149898454 C T SF3B4 Missense_Mutation p.V174I 0.13 tolerated(0.12) possibly_damaging(0.478) TCGA-WS-AB45-01 1 149902759 149902759 A G MTMR11 Silent p.H463H 0.11 TCGA-WS-AB45-01 1 150039983 150039983 A C VPS45 Missense_Mutation p.K23N 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 1 150234562 150234563 CT - CA14 Frame_Shift_Del p.L90Afs*38 0.12 TCGA-WS-AB45-01 1 150444633 150444633 C G RPRD2 Missense_Mutation p.S1070C 0.28 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-WS-AB45-01 1 150445677 150445677 G A RPRD2 Missense_Mutation p.R1418Q 0.14 deleterious_low_confidence(0) benign(0.181) TCGA-WS-AB45-01 1 151040888 151040888 T C MLLT11 3'UTR 0.09 TCGA-WS-AB45-01 1 151147359 151147359 C T TMOD4 5'UTR 0.19 TCGA-WS-AB45-01 1 151258766 151258766 A G ZNF687 5'UTR 0.25 TCGA-WS-AB45-01 1 151694577 151694577 G A RIIAD1 Missense_Mutation p.A34T 0.12 tolerated(0.22) benign(0.135) TCGA-WS-AB45-01 1 151746765 151746765 G A TDRKH Intron 0.28 TCGA-WS-AB45-01 1 151810936 151810936 G A C2CD4D Missense_Mutation p.A177V 0.31 tolerated(0.15) benign(0.024) TCGA-WS-AB45-01 1 152284170 152284170 C T FLG Nonsense_Mutation p.W1064* 0.24 TCGA-WS-AB45-01 1 152284172 152284172 A G FLG Missense_Mutation p.W1064R 0.24 benign(0.033) TCGA-WS-AB45-01 1 152327640 152327640 G A FLG2 Silent p.H874H 0.28 TCGA-WS-AB45-01 1 153600908 153600908 G A S100A1 5'UTR 0.09 TCGA-WS-AB45-01 1 153661687 153661687 G A NPR1 Missense_Mutation p.R863H 0.22 deleterious(0.01) probably_damaging(0.97) TCGA-WS-AB45-01 1 153742265 153742265 C T INTS3 Silent p.H778H 0.30 TCGA-WS-AB45-01 1 153752395 153752395 G A SLC27A3 Missense_Mutation p.V704I 0.10 tolerated(0.25) benign(0.022) TCGA-WS-AB45-01 1 153955201 153955201 G A RAB13 Silent p.A136A 0.07 TCGA-WS-AB45-01 1 154180039 154180039 T G C1orf43 Missense_Mutation p.T218P 0.04 tolerated(0.16) possibly_damaging(0.905) TCGA-WS-AB45-01 1 154227633 154227633 A G UBAP2L Missense_Mutation p.T639A 0.25 tolerated(0.71) unknown(0) TCGA-WS-AB45-01 1 154246356 154246357 - G HAX1 Frame_Shift_Ins p.V144Gfs*5 0.31 TCGA-WS-AB45-01 1 154841898 154841898 G A KCNN3 Silent p.S181S 0.08 TCGA-WS-AB45-01 1 154932027 154932028 - G PYGO2 Frame_Shift_Ins p.Q150Pfs*27 0.25 TCGA-WS-AB45-01 1 155003015 155003015 T C DCST2 Silent p.V304V 0.13 TCGA-WS-AB45-01 1 155006497 155006498 - C DCST1 5'UTR 0.23 TCGA-WS-AB45-01 1 155036335 155036335 G T EFNA4 Missense_Mutation p.W12C 0.12 deleterious(0) possibly_damaging(0.893) TCGA-WS-AB45-01 1 155168388 155168388 C A THBS3 Missense_Mutation p.G629V 0.31 deleterious(0.02) probably_damaging(0.977) TCGA-WS-AB45-01 1 155224829 155224829 G - FAM189B 5'UTR 0.47 TCGA-WS-AB45-01 1 155264400 155264400 C - PKLR Frame_Shift_Del p.V280Wfs*41 0.19 TCGA-WS-AB45-01 1 155448781 155448781 G T ASH1L Missense_Mutation p.L1294I 0.30 tolerated_low_confidence(0.33) probably_damaging(0.995) TCGA-WS-AB45-01 1 155701744 155701744 G A DAP3 Missense_Mutation p.A305T 0.11 deleterious(0.01) benign(0.365) TCGA-WS-AB45-01 1 1558852 1558852 C T MIB2 Missense_Mutation p.A122V 0.17 tolerated(0.08) probably_damaging(0.921) TCGA-WS-AB45-01 1 155921288 155921288 G T ARHGEF2 Missense_Mutation p.L749I 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-WS-AB45-01 1 1560528 1560528 G A MIB2 Silent p.A343A 0.15 TCGA-WS-AB45-01 1 1560947 1560947 G A MIB2 Missense_Mutation p.V411M 0.14 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 1 156132838 156132838 C T SEMA4A Missense_Mutation p.R363C 0.17 deleterious(0) probably_damaging(0.967) TCGA-WS-AB45-01 1 156170081 156170081 G A SLC25A44 Missense_Mutation p.R148H 0.26 tolerated(0.15) probably_damaging(0.992) TCGA-WS-AB45-01 1 156209400 156209400 G A PMF1 Intron 0.35 TCGA-WS-AB45-01 1 156348100 156348100 G A RHBG Missense_Mutation p.V195I 0.16 deleterious(0.03) benign(0.025) TCGA-WS-AB45-01 1 156376965 156376965 G T C1orf61 Silent p.S110S 0.13 TCGA-WS-AB45-01 1 156639325 156639325 C - NES Frame_Shift_Del p.G1552Efs*2 0.19 TCGA-WS-AB45-01 1 156902337 156902338 TG - LRRC71 Splice_Site p.X521_splice 0.22 TCGA-WS-AB45-01 1 158046018 158046018 C T KIRREL Silent p.D56D 0.11 TCGA-WS-AB45-01 1 158368526 158368526 T C OR10T2 Missense_Mutation p.H244R 0.08 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 1 15874910 15874910 C T DNAJC16 Missense_Mutation p.A337V 0.17 tolerated(0.7) benign(0.062) TCGA-WS-AB45-01 1 159024841 159024841 T - IFI16 3'UTR 0.15 TCGA-WS-AB45-01 1 159684337 159684337 C T CRP 5'UTR 0.09 TCGA-WS-AB45-01 1 159824779 159824779 G A VSIG8 Missense_Mutation p.R337C 0.15 deleterious(0.02) possibly_damaging(0.877) TCGA-WS-AB45-01 1 159825708 159825708 G A VSIG8 Silent p.G312G 0.11 TCGA-WS-AB45-01 1 15986502 15986502 C T RSC1A1 Missense_Mutation p.R47C 0.16 deleterious(0.05) benign(0.008) TCGA-WS-AB45-01 1 160098506 160098506 C T ATP1A2 Missense_Mutation p.A361V 0.23 deleterious(0) probably_damaging(0.985) TCGA-WS-AB45-01 1 160146342 160146342 C T ATP1A4 Missense_Mutation p.T847M 0.11 tolerated(0.17) benign(0.048) TCGA-WS-AB45-01 1 16051845 16051845 G A PLEKHM2 Missense_Mutation p.R249H 0.13 tolerated_low_confidence(0.07) benign(0.012) TCGA-WS-AB45-01 1 16053617 16053617 C T PLEKHM2 Silent p.D350D 0.14 TCGA-WS-AB45-01 1 16057117 16057117 C - PLEKHM2 Frame_Shift_Del p.E769Rfs*51 0.15 TCGA-WS-AB45-01 1 160783653 160783653 G A LY9 Missense_Mutation p.V228I 0.29 tolerated(0.24) benign(0.107) TCGA-WS-AB45-01 1 160832522 160832522 G A CD244 5'UTR 0.07 TCGA-WS-AB45-01 1 160968518 160968518 A - F11R 3'UTR 0.12 TCGA-WS-AB45-01 1 161026198 161026198 G A ARHGAP30 Missense_Mutation p.R109W 0.17 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 1 161495216 161495216 C T HSPA6 Silent p.S256S 0.24 TCGA-WS-AB45-01 1 161495465 161495465 G - HSPA6 Frame_Shift_Del p.G341Afs*21 0.22 TCGA-WS-AB45-01 1 165218765 165218765 C T LMX1A Missense_Mutation p.E126K 0.12 tolerated(0.13) possibly_damaging(0.812) TCGA-WS-AB45-01 1 165324842 165324842 G A LMX1A Intron 0.23 TCGA-WS-AB45-01 1 16563361 16563361 C G RSG1 5'UTR 0.15 TCGA-WS-AB45-01 1 16578277 16578277 C A FBXO42 Nonsense_Mutation p.G348* 0.19 TCGA-WS-AB45-01 1 166890027 166890027 G T ILDR2 Missense_Mutation p.R601S 0.26 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 1 166958656 166958656 C T MAEL Missense_Mutation p.R23W 0.39 deleterious(0) probably_damaging(0.974) TCGA-WS-AB45-01 1 16752056 16752056 C T SPATA21 Intron 0.12 TCGA-WS-AB45-01 1 167823675 167823675 T A ADCY10 Nonsense_Mutation p.K742* 0.18 TCGA-WS-AB45-01 1 16802942 16802942 G A CROCCP3 RNA 0.27 TCGA-WS-AB45-01 1 168065850 168065850 C T GPR161 Missense_Mutation p.R352H 0.19 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 1 169366580 169366580 T - CCDC181 Frame_Shift_Del p.K421Sfs*6 0.34 TCGA-WS-AB45-01 1 169985746 169985747 - C KIFAP3 Frame_Shift_Ins p.E347Gfs*10 0.10 TCGA-WS-AB45-01 1 17085027 17085027 C T MST1L RNA 0.04 TCGA-WS-AB45-01 1 171501882 171501882 A - PRRC2C Frame_Shift_Del p.K551Nfs*17 0.18 TCGA-WS-AB45-01 1 171509660 171509660 A - PRRC2C Frame_Shift_Del p.K1018Nfs*7 0.17 TCGA-WS-AB45-01 1 172113672 172113672 C T DNM3 Intron 0.13 TCGA-WS-AB45-01 1 17292563 17292563 G A CROCC Missense_Mutation p.A1549T 0.17 possibly_damaging(0.695) TCGA-WS-AB45-01 1 17350503 17350503 C T SDHB Missense_Mutation p.G203R 0.32 deleterious(0) probably_damaging(0.947) TCGA-WS-AB45-01 1 173825852 173825852 G A DARS2 Missense_Mutation p.A575T 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-WS-AB45-01 1 175332899 175332899 C T TNR Nonsense_Mutation p.W884* 0.08 TCGA-WS-AB45-01 1 176015428 176015428 G A RFWD2 Missense_Mutation p.A437V 0.23 deleterious(0) probably_damaging(0.951) TCGA-WS-AB45-01 1 17609356 17609356 C T PADI3 Silent p.L593L 0.17 TCGA-WS-AB45-01 1 17609609 17609609 C T PADI3 3'UTR 0.09 TCGA-WS-AB45-01 1 176668378 176668378 C A PAPPA2 Silent p.A963A 0.15 TCGA-WS-AB45-01 1 176738881 176738881 C T PAPPA2 Missense_Mutation p.R1488C 0.08 deleterious(0) probably_damaging(0.912) TCGA-WS-AB45-01 1 178489979 178489979 G A TEX35 Silent p.L171L 0.10 TCGA-WS-AB45-01 1 178490436 178490436 C T TEX35 Intron 0.09 TCGA-WS-AB45-01 1 17944950 17944950 G A ARHGEF10L Intron 0.14 TCGA-WS-AB45-01 1 179887127 179887127 C T TOR1AIP1 Missense_Mutation p.A502V 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-WS-AB45-01 1 180882375 180882375 G A KIAA1614 5'UTR 0.08 TCGA-WS-AB45-01 1 181691006 181691006 G A CACNA1E Missense_Mutation p.G690D 0.26 deleterious(0.01) benign(0.001) TCGA-WS-AB45-01 1 181701537 181701537 G A CACNA1E Missense_Mutation p.R772Q 0.12 tolerated(0.17) benign(0.238) TCGA-WS-AB45-01 1 182908680 182908681 - A SHCBP1L Frame_Shift_Ins p.Y260Lfs*2 0.10 TCGA-WS-AB45-01 1 184588821 184588821 G A C1orf21 3'UTR 0.32 TCGA-WS-AB45-01 1 184702058 184702058 G A EDEM3 Silent p.Y175Y 0.29 TCGA-WS-AB45-01 1 184764586 184764586 C T FAM129A Missense_Mutation p.R771K 0.32 tolerated_low_confidence(0.4) benign(0.009) TCGA-WS-AB45-01 1 185069568 185069568 G A RNF2 3'UTR 0.09 TCGA-WS-AB45-01 1 186141148 186141148 G A HMCN1 Silent p.E5233E 0.20 TCGA-WS-AB45-01 1 19181360 19181360 G A TAS1R2 Missense_Mutation p.R202C 0.15 deleterious(0.04) possibly_damaging(0.893) TCGA-WS-AB45-01 1 19199402 19199402 C T ALDH4A1 Silent p.S543S 0.22 TCGA-WS-AB45-01 1 193028451 193028451 G A UCHL5 5'UTR 0.32 TCGA-WS-AB45-01 1 193065813 193065813 A G GLRX2 Missense_Mutation p.L147S 0.12 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 1 193149591 193149591 G A B3GALT2 Nonsense_Mutation p.R368* 0.07 TCGA-WS-AB45-01 1 19422046 19422046 A G UBR4 Missense_Mutation p.L4540P 0.15 probably_damaging(0.995) TCGA-WS-AB45-01 1 19484344 19484344 G A UBR4 Missense_Mutation p.R1909C 0.07 probably_damaging(0.997) TCGA-WS-AB45-01 1 196461402 196461403 - T KCNT2 Frame_Shift_Ins p.N55Kfs*37 0.16 TCGA-WS-AB45-01 1 196800930 196800930 C T CFHR1 Missense_Mutation p.P265L 0.27 deleterious(0.02) possibly_damaging(0.588) TCGA-WS-AB45-01 1 20005830 20005830 G A HTR6 Missense_Mutation p.R431Q 0.15 tolerated_low_confidence(0.72) benign(0.002) TCGA-WS-AB45-01 1 200377505 200377505 G A ZNF281 Silent p.T443T 0.20 TCGA-WS-AB45-01 1 200842257 200842257 C T GPR25 Missense_Mutation p.P31L 0.10 tolerated(0.34) benign(0.01) TCGA-WS-AB45-01 1 200956291 200956291 C T KIF21B Silent p.S1149S 0.13 TCGA-WS-AB45-01 1 201759832 201759832 C T NAV1 Missense_Mutation p.R1087C 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-WS-AB45-01 1 202097199 202097199 C T GPR37L1 Missense_Mutation p.P321S 0.14 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 1 202097410 202097410 G A GPR37L1 Missense_Mutation p.R391H 0.10 deleterious(0.03) possibly_damaging(0.806) TCGA-WS-AB45-01 1 202568385 202568385 G A SYT2 Silent p.N338N 0.29 TCGA-WS-AB45-01 1 202702711 202702711 G A KDM5B Nonsense_Mutation p.R1243* 0.29 TCGA-WS-AB45-01 1 203044760 203044760 G A PPFIA4 Missense_Mutation p.R644Q 0.13 deleterious(0.02) benign(0.332) TCGA-WS-AB45-01 1 203452824 203452824 G A PRELP Missense_Mutation p.R171Q 0.26 tolerated(0.45) benign(0.016) TCGA-WS-AB45-01 1 203672839 203672839 G A ATP2B4 Missense_Mutation p.D333N 0.14 tolerated(0.13) possibly_damaging(0.521) TCGA-WS-AB45-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.19 TCGA-WS-AB45-01 1 20442832 20442832 G A PLA2G2D Missense_Mutation p.T60M 0.10 deleterious(0) probably_damaging(0.989) TCGA-WS-AB45-01 1 205156847 205156847 C T DSTYK Missense_Mutation p.G118D 0.24 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 1 205496967 205496967 C T CDK18 Missense_Mutation p.R289C 0.27 deleterious(0.01) possibly_damaging(0.831) TCGA-WS-AB45-01 1 205768143 205768143 G A SLC41A1 Silent p.H213H 0.13 TCGA-WS-AB45-01 1 205884523 205884523 C T SLC26A9 Missense_Mutation p.G780R 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-WS-AB45-01 1 205892523 205892523 C T SLC26A9 Silent p.T533T 0.12 TCGA-WS-AB45-01 1 20637101 20637101 G A VWA5B1 Missense_Mutation p.G3S 0.15 deleterious(0) probably_damaging(0.951) TCGA-WS-AB45-01 1 20656717 20656717 C T VWA5B1 Silent p.A433A 0.11 TCGA-WS-AB45-01 1 206760301 206760301 A C RASSF5 Missense_Mutation p.K416N 0.13 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-WS-AB45-01 1 207139176 207139177 - T FCAMR Frame_Shift_Ins p.R66Kfs*103 0.11 TCGA-WS-AB45-01 1 208390093 208390093 T G PLXNA2 Missense_Mutation p.Q392P 0.12 tolerated(0.85) benign(0) TCGA-WS-AB45-01 1 209800301 209800301 C T LAMB3 Missense_Mutation p.R503Q 0.14 tolerated(0.06) benign(0.202) TCGA-WS-AB45-01 1 211192393 211192393 C T KCNH1 Missense_Mutation p.S255N 0.24 tolerated(0.07) benign(0.229) TCGA-WS-AB45-01 1 21205995 21205995 G A EIF4G3 Nonsense_Mutation p.R765* 0.23 TCGA-WS-AB45-01 1 212151645 212151645 C T INTS7 Missense_Mutation p.R480Q 0.31 tolerated(0.31) benign(0.005) TCGA-WS-AB45-01 1 212273666 212273666 C T DTL Missense_Mutation p.P445L 0.27 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 1 212798637 212798637 C T FAM71A Missense_Mutation p.R140C 0.28 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 1 213168440 213168440 G A ANGEL2 Silent p.N526N 0.23 TCGA-WS-AB45-01 1 214531297 214531297 T C PTPN14 Missense_Mutation p.I1178V 0.25 deleterious(0.04) benign(0.003) TCGA-WS-AB45-01 1 214819474 214819474 A - CENPF Frame_Shift_Del p.T2189Hfs*3 0.21 TCGA-WS-AB45-01 1 216380679 216380679 C T USH2A Nonsense_Mutation p.W1084* 0.11 TCGA-WS-AB45-01 1 21896820 21896820 G A ALPL Missense_Mutation p.R272H 0.15 tolerated(0.06) benign(0.253) TCGA-WS-AB45-01 1 21903914 21903914 C T ALPL Missense_Mutation p.R450C 0.14 tolerated(0.05) probably_damaging(0.932) TCGA-WS-AB45-01 1 220156187 220156187 C A EPRS Splice_Site p.X1101_splice 0.23 TCGA-WS-AB45-01 1 221912376 221912376 A G DUSP10 Silent p.D237D 0.08 TCGA-WS-AB45-01 1 22217179 22217179 G A HSPG2 Nonsense_Mutation p.R85* 0.25 TCGA-WS-AB45-01 1 222713569 222713569 G A HHIPL2 Silent p.P411P 0.26 TCGA-WS-AB45-01 1 222923301 222923301 C A FAM177B Silent p.A126A 0.23 TCGA-WS-AB45-01 1 223396800 223396800 G - SUSD4 Frame_Shift_Del p.P412Qfs*51 0.14 TCGA-WS-AB45-01 1 223566978 223566978 A C C1orf65 Missense_Mutation p.E54A 0.17 deleterious(0.01) possibly_damaging(0.752) TCGA-WS-AB45-01 1 224301907 224301907 T G FBXO28 Missense_Mutation p.S26A 0.26 tolerated_low_confidence(1) unknown(0) TCGA-WS-AB45-01 1 224577345 224577345 G A WDR26 3'UTR 0.38 TCGA-WS-AB45-01 1 225332227 225332227 G A DNAH14 Missense_Mutation p.R624Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 1 225453069 225453069 C T DNAH14 Missense_Mutation p.R1924W 0.25 deleterious(0) benign(0.01) TCGA-WS-AB45-01 1 226413273 226413273 T C MIXL1 Silent p.A153A 0.11 TCGA-WS-AB45-01 1 227170420 227170420 C T ADCK3 Missense_Mutation p.R299W 0.18 deleterious(0) probably_damaging(0.965) TCGA-WS-AB45-01 1 22828927 22828927 A - ZBTB40 Frame_Shift_Del p.R389Gfs*2 0.09 TCGA-WS-AB45-01 1 228295752 228295752 G A MRPL55 Silent p.N20N 0.22 TCGA-WS-AB45-01 1 228346815 228346815 G T GJC2 3'UTR 0.26 TCGA-WS-AB45-01 1 228362991 228362991 G A IBA57 Missense_Mutation p.R283Q 0.26 tolerated(0.54) benign(0.022) TCGA-WS-AB45-01 1 228470826 228470826 C T OBSCN Silent p.L3289L 0.24 TCGA-WS-AB45-01 1 228509457 228509457 A G OBSCN Missense_Mutation p.Q5929R 0.17 benign(0.107) TCGA-WS-AB45-01 1 228547880 228547880 G T OBSCN Intron 0.12 TCGA-WS-AB45-01 1 228559623 228559623 C - OBSCN Frame_Shift_Del p.H8007Tfs*22 0.10 TCGA-WS-AB45-01 1 228566414 228566414 C T OBSCN Missense_Mutation p.A8897V 0.13 probably_damaging(0.981) TCGA-WS-AB45-01 1 228602461 228602461 G A TRIM17 Missense_Mutation p.P105S 0.26 tolerated(0.13) possibly_damaging(0.56) TCGA-WS-AB45-01 1 228612586 228612586 C T HIST3H3 3'UTR 0.19 TCGA-WS-AB45-01 1 228676706 228676706 G A RNF187 Missense_Mutation p.A37T 0.08 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-WS-AB45-01 1 22928298 22928298 C T EPHA8 3'UTR 0.16 TCGA-WS-AB45-01 1 22973894 22973894 A C C1QC Missense_Mutation p.Q119P 0.12 deleterious(0) probably_damaging(0.963) TCGA-WS-AB45-01 1 230203102 230203102 G - GALNT2 Frame_Shift_Del p.G27Afs*115 0.18 TCGA-WS-AB45-01 1 230814698 230814698 C T COG2 Missense_Mutation p.R356W 0.15 deleterious(0.03) possibly_damaging(0.656) TCGA-WS-AB45-01 1 231299352 231299352 C T TRIM67 Missense_Mutation p.R213C 0.22 deleterious(0.02) possibly_damaging(0.791) TCGA-WS-AB45-01 1 231472257 231472257 C T EXOC8 Missense_Mutation p.R412H 0.19 deleterious(0) probably_damaging(0.991) TCGA-WS-AB45-01 1 2332301 2332301 G A RER1 Missense_Mutation p.G98S 0.14 deleterious(0.02) possibly_damaging(0.867) TCGA-WS-AB45-01 1 233514890 233514890 C - MLK4 Frame_Shift_Del p.Q715Rfs*236 0.22 TCGA-WS-AB45-01 1 235606224 235606224 C T TBCE Missense_Mutation p.P466L 0.25 deleterious(0.03) probably_damaging(0.936) TCGA-WS-AB45-01 1 235993607 235993607 C T LYST Silent p.T37T 0.27 TCGA-WS-AB45-01 1 236719500 236719500 C T HEATR1 Missense_Mutation p.R1805H 0.23 deleterious(0.02) benign(0.074) TCGA-WS-AB45-01 1 236734701 236734701 T C HEATR1 Missense_Mutation p.T1300A 0.13 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 1 237167445 237167445 C T MT1HL1 3'UTR 0.35 TCGA-WS-AB45-01 1 237955536 237955536 C T RYR2 Silent p.S4565S 0.20 TCGA-WS-AB45-01 1 24022311 24022311 C T RPL11 Silent p.S140S 0.17 TCGA-WS-AB45-01 1 240256225 240256225 G A FMN2 Silent p.A272A 0.25 TCGA-WS-AB45-01 1 240370893 240370893 C A FMN2 Silent p.P927P 0.22 TCGA-WS-AB45-01 1 241676975 241676975 C T FH Silent p.A102A 0.20 TCGA-WS-AB45-01 1 241797548 241797548 C T CHML Silent p.L507L 0.26 TCGA-WS-AB45-01 1 242030154 242030154 G C EXO1 Missense_Mutation p.S355T 0.10 deleterious(0.05) possibly_damaging(0.616) TCGA-WS-AB45-01 1 2433629 2433629 C T PLCH2 Missense_Mutation p.R887W 0.15 tolerated_low_confidence(0.07) benign(0.003) TCGA-WS-AB45-01 1 2433855 2433855 C T PLCH2 Missense_Mutation p.A962V 0.20 tolerated_low_confidence(0.25) benign(0.042) TCGA-WS-AB45-01 1 243437887 243437887 G A SDCCAG8 Missense_Mutation p.D117N 0.21 tolerated(0.64) benign(0.002) TCGA-WS-AB45-01 1 24407877 24407877 C T MYOM3 Missense_Mutation p.E784K 0.15 tolerated(0.54) benign(0.028) TCGA-WS-AB45-01 1 244218467 244218467 G A ZBTB18 Missense_Mutation p.R464H 0.24 deleterious(0) probably_damaging(0.984) TCGA-WS-AB45-01 1 245530298 245530298 G A KIF26B Missense_Mutation p.G210S 0.29 tolerated(1) unknown(0) TCGA-WS-AB45-01 1 245848841 245848841 C T KIF26B Silent p.P852P 0.14 TCGA-WS-AB45-01 1 245851789 245851789 C G KIF26B Missense_Mutation p.A1835G 0.12 tolerated(0.4) unknown(0) TCGA-WS-AB45-01 1 24669424 24669424 C T GRHL3 Missense_Mutation p.T443M 0.14 tolerated(0.14) possibly_damaging(0.488) TCGA-WS-AB45-01 1 24700220 24700220 G A STPG1 Silent p.F181F 0.13 TCGA-WS-AB45-01 1 247025323 247025323 G A AHCTF1 Nonsense_Mutation p.R1234* 0.24 TCGA-WS-AB45-01 1 247587459 247587459 G A NLRP3 Silent p.K238K 0.06 TCGA-WS-AB45-01 1 248059312 248059312 C A OR2W3 Silent p.R142R 0.19 TCGA-WS-AB45-01 1 248637239 248637239 C T OR2T3 Silent p.D196D 0.13 TCGA-WS-AB45-01 1 248685507 248685507 T C OR2G6 Missense_Mutation p.L187P 0.13 deleterious(0) probably_damaging(0.987) TCGA-WS-AB45-01 1 248737471 248737471 G A OR2T34 Silent p.D196D 0.05 TCGA-WS-AB45-01 1 248813616 248813616 C T OR2T27 Silent p.T190T 0.12 TCGA-WS-AB45-01 1 249144952 249144952 G A ZNF692 Silent p.C399C 0.15 TCGA-WS-AB45-01 1 24979423 24979423 C T SRRM1 Missense_Mutation p.R314W 0.12 unknown(0) TCGA-WS-AB45-01 1 2537025 2537025 T C MMEL1 Missense_Mutation p.Y263C 0.15 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 1 26504027 26504027 C T CNKSR1 5'UTR 0.19 TCGA-WS-AB45-01 1 26881202 26881202 G A RPS6KA1 Silent p.A252A 0.07 TCGA-WS-AB45-01 1 27278192 27278192 G A C1orf172 Missense_Mutation p.P227L 0.18 tolerated(0.18) probably_damaging(0.976) TCGA-WS-AB45-01 1 27332396 27332396 C T FAM46B 3'UTR 0.15 TCGA-WS-AB45-01 1 27434181 27434181 C T SLC9A1 Missense_Mutation p.V414I 0.14 tolerated(0.48) benign(0.19) TCGA-WS-AB45-01 1 27721051 27721051 C T GPR3 Missense_Mutation p.A250V 0.23 tolerated(0.11) possibly_damaging(0.475) TCGA-WS-AB45-01 1 27874862 27874862 G T AHDC1 Silent p.A1255A 0.23 TCGA-WS-AB45-01 1 27876355 27876355 C A AHDC1 Missense_Mutation p.G758C 0.11 deleterious(0.01) probably_damaging(0.984) TCGA-WS-AB45-01 1 27876579 27876579 G A AHDC1 Missense_Mutation p.A683V 0.25 deleterious(0.04) possibly_damaging(0.695) TCGA-WS-AB45-01 1 27876869 27876869 T - AHDC1 Frame_Shift_Del p.K586Nfs*37 0.14 TCGA-WS-AB45-01 1 27877505 27877505 G - AHDC1 Frame_Shift_Del p.P376Lfs*76 0.11 TCGA-WS-AB45-01 1 28060599 28060599 C T FAM76A Missense_Mutation p.R121C 0.15 deleterious(0) probably_damaging(0.961) TCGA-WS-AB45-01 1 28293113 28293113 T C XKR8 Missense_Mutation p.L197P 0.12 tolerated(0.26) benign(0.005) TCGA-WS-AB45-01 1 28476864 28476864 G A PTAFR Silent p.N223N 0.21 TCGA-WS-AB45-01 1 29189688 29189688 G A OPRD1 Missense_Mutation p.G338S 0.25 tolerated(0.82) benign(0) TCGA-WS-AB45-01 1 31907032 31907032 C T SERINC2 Missense_Mutation p.R461C 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 1 32089257 32089257 G A HCRTR1 Missense_Mutation p.R291H 0.15 deleterious(0.03) benign(0.032) TCGA-WS-AB45-01 1 32133195 32133195 G A COL16A1 Missense_Mutation p.A1113V 0.11 unknown(0) TCGA-WS-AB45-01 1 32831987 32831987 C A BSDC1 3'Flank 0.17 TCGA-WS-AB45-01 1 3328790 3328790 C T PRDM16 Missense_Mutation p.P677S 0.29 tolerated(0.14) possibly_damaging(0.847) TCGA-WS-AB45-01 1 3328899 3328899 A G PRDM16 Missense_Mutation p.E713G 0.19 deleterious(0) possibly_damaging(0.821) TCGA-WS-AB45-01 1 33291761 33291761 G A S100PBP Missense_Mutation p.G21S 0.10 tolerated(0.68) benign(0.002) TCGA-WS-AB45-01 1 33361285 33361285 G A TMEM54 Silent p.L110L 0.25 TCGA-WS-AB45-01 1 33772906 33772906 G A A3GALT2 Missense_Mutation p.R162C 0.25 tolerated(0.07) benign(0.015) TCGA-WS-AB45-01 1 3379829 3379829 C T ARHGEF16 Missense_Mutation p.R61W 0.13 deleterious(0.01) benign(0.232) TCGA-WS-AB45-01 1 3385443 3385443 G T ARHGEF16 Splice_Site p.X269_splice 0.18 TCGA-WS-AB45-01 1 34102044 34102044 C T CSMD2 Missense_Mutation p.E1589K 0.14 tolerated(0.98) benign(0.007) TCGA-WS-AB45-01 1 35228864 35228864 C T GJB4 3'UTR 0.10 TCGA-WS-AB45-01 1 35260542 35260542 G A GJA4 Missense_Mutation p.R243Q 0.10 tolerated(0.24) benign(0.002) TCGA-WS-AB45-01 1 35320868 35320868 A - SMIM12 3'UTR 0.13 TCGA-WS-AB45-01 1 35333213 35333213 C T DLGAP3 Missense_Mutation p.R834H 0.12 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 1 3553629 3553629 G A WRAP73 Missense_Mutation p.A149V 0.21 deleterious(0.04) possibly_damaging(0.816) TCGA-WS-AB45-01 1 3646013 3646013 G A TP73 Splice_Site p.X399_splice 0.16 TCGA-WS-AB45-01 1 36550794 36550794 C T TEKT2 Nonsense_Mutation p.R63* 0.12 TCGA-WS-AB45-01 1 36564606 36564606 C T COL8A2 Missense_Mutation p.G226S 0.19 deleterious(0.01) unknown(0) TCGA-WS-AB45-01 1 36641844 36641844 C T MAP7D1 Missense_Mutation p.R299C 0.21 probably_damaging(0.999) TCGA-WS-AB45-01 1 3672038 3672038 G A CCDC27 Missense_Mutation p.D154N 0.13 tolerated(0.32) benign(0.12) TCGA-WS-AB45-01 1 36808745 36808746 TC - STK40 Intron 0.17 TCGA-WS-AB45-01 1 36809863 36809863 G A STK40 Missense_Mutation p.R248W 0.21 deleterious(0) probably_damaging(0.912) TCGA-WS-AB45-01 1 38185238 38185238 G - EPHA10 Frame_Shift_Del p.R869Gfs*10 0.11 TCGA-WS-AB45-01 1 38227638 38227638 G A EPHA10 Missense_Mutation p.R97C 0.11 deleterious(0) probably_damaging(0.942) TCGA-WS-AB45-01 1 38265893 38265893 G A MANEAL 3'UTR 0.13 TCGA-WS-AB45-01 1 39765966 39765966 C T MACF1 Missense_Mutation p.R861C 0.16 probably_damaging(0.989) TCGA-WS-AB45-01 1 39854240 39854240 C T MACF1 Silent p.D3180D 0.18 TCGA-WS-AB45-01 1 39854292 39854292 G A MACF1 Missense_Mutation p.E3198K 0.16 probably_damaging(0.999) TCGA-WS-AB45-01 1 39916743 39916743 G T MACF1 Missense_Mutation p.A4701S 0.15 probably_damaging(0.971) TCGA-WS-AB45-01 1 39920727 39920727 G A MACF1 Silent p.P4952P 0.21 TCGA-WS-AB45-01 1 40422846 40422846 T C MFSD2A Missense_Mutation p.C61R 0.07 deleterious(0.01) possibly_damaging(0.774) TCGA-WS-AB45-01 1 40769309 40769309 C T COL9A2 Missense_Mutation p.G481R 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-WS-AB45-01 1 41284281 41284281 C T KCNQ4 Missense_Mutation p.R213C 0.25 deleterious(0) probably_damaging(0.984) TCGA-WS-AB45-01 1 41285914 41285914 G A KCNQ4 Silent p.P341P 0.12 TCGA-WS-AB45-01 1 41483604 41483604 G A SLFNL1 Silent p.S220S 0.17 TCGA-WS-AB45-01 1 43296552 43296552 C T ERMAP Missense_Mutation p.R67W 0.16 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 1 43650985 43650985 G A WDR65 Silent p.K309K 0.19 TCGA-WS-AB45-01 1 43778122 43778122 C T TIE1 Missense_Mutation p.R593W 0.11 tolerated(0.08) possibly_damaging(0.906) TCGA-WS-AB45-01 1 44402530 44402530 G A ARTN 3'UTR 0.14 TCGA-WS-AB45-01 1 44451218 44451218 G A B4GALT2 Missense_Mutation p.R327H 0.13 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 1 44687129 44687130 AG - ERI3 3'UTR 0.23 TCGA-WS-AB45-01 1 45101281 45101281 C - RNF220 Intron 0.15 TCGA-WS-AB45-01 1 45407191 45407191 C T EIF2B3 Silent p.G147G 0.14 TCGA-WS-AB45-01 1 45793434 45793434 C T HPDL Missense_Mutation p.A205V 0.15 tolerated(0.25) benign(0.022) TCGA-WS-AB45-01 1 46495604 46495606 GAT - MAST2 In_Frame_Del p.D809del 0.12 TCGA-WS-AB45-01 1 46511629 46511629 C T PIK3R3 Missense_Mutation p.R383H 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 1 46655225 46655225 C A POMGNT1 Missense_Mutation p.W600C 0.19 probably_damaging(1) TCGA-WS-AB45-01 1 46827334 46827334 C A NSUN4 Missense_Mutation p.A324D 0.17 deleterious(0) probably_damaging(0.977) TCGA-WS-AB45-01 1 47024416 47024416 C T MKNK1 Missense_Mutation p.R410H 0.19 deleterious(0) probably_damaging(0.968) TCGA-WS-AB45-01 1 47078757 47078757 C T MOB3C Silent p.A131A 0.22 TCGA-WS-AB45-01 1 4772118 4772118 T C AJAP1 Missense_Mutation p.L63P 0.23 tolerated(0.1) benign(0.003) TCGA-WS-AB45-01 1 47883235 47883235 G A FOXE3 3'UTR 0.15 TCGA-WS-AB45-01 1 50489523 50489524 - G AGBL4 5'UTR 0.13 TCGA-WS-AB45-01 1 50610647 50610647 C A ELAVL4 Missense_Mutation p.P27T 0.15 tolerated_low_confidence(0.87) benign(0.001) TCGA-WS-AB45-01 1 51050386 51050386 G A FAF1 Missense_Mutation p.A313V 0.11 tolerated(0.3) benign(0.01) TCGA-WS-AB45-01 1 51912709 51912709 G A EPS15 Silent p.D240D 0.14 TCGA-WS-AB45-01 1 52442593 52442593 C T RAB3B Missense_Mutation p.R66H 0.16 tolerated(0.11) probably_damaging(0.958) TCGA-WS-AB45-01 1 52549089 52549089 C T BTF3L4 Silent p.T82T 0.15 TCGA-WS-AB45-01 1 52705124 52705124 G A ZFYVE9 Missense_Mutation p.G679R 0.12 deleterious(0) probably_damaging(0.98) TCGA-WS-AB45-01 1 52954612 52954612 G T ZCCHC11 Missense_Mutation p.P495H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 1 53546522 53546522 G A PODN Silent p.T593T 0.12 TCGA-WS-AB45-01 1 54694464 54694464 G A SSBP3 Silent p.G321G 0.09 TCGA-WS-AB45-01 1 57157094 57157094 T - PRKAA2 Frame_Shift_Del p.F90Lfs*3 0.09 TCGA-WS-AB45-01 1 63789478 63789478 C T FOXD3 Missense_Mutation p.A250V 0.09 deleterious(0.02) benign(0.015) TCGA-WS-AB45-01 1 6508881 6508881 G C ESPN Missense_Mutation p.A549P 0.11 deleterious_low_confidence(0.05) possibly_damaging(0.669) TCGA-WS-AB45-01 1 6520298 6520298 C T ESPN 3'UTR 0.17 TCGA-WS-AB45-01 1 6592053 6592053 G T NOL9 Missense_Mutation p.P541H 0.12 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 1 6592680 6592680 T - NOL9 Frame_Shift_Del p.S460Afs*5 0.17 TCGA-WS-AB45-01 1 66074550 66074550 G A LEPR Missense_Mutation p.R573H 0.12 deleterious(0) possibly_damaging(0.843) TCGA-WS-AB45-01 1 6685259 6685259 G A THAP3 5'UTR 0.15 TCGA-WS-AB45-01 1 6712942 6712942 C A DNAJC11 Missense_Mutation p.G193C 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 1 67845723 67845723 G A IL12RB2 Missense_Mutation p.R591Q 0.16 tolerated(0.5) benign(0.015) TCGA-WS-AB45-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.15 TCGA-WS-AB45-01 1 68171254 68171254 C T GNG12 Silent p.S33S 0.12 TCGA-WS-AB45-01 1 70715678 70715678 A - SRSF11 Frame_Shift_Del p.K357Sfs*62 0.11 TCGA-WS-AB45-01 1 75037915 75037915 G A C1orf173 Missense_Mutation p.T1160M 0.15 deleterious(0.03) possibly_damaging(0.674) TCGA-WS-AB45-01 1 75685526 75685526 A G SLC44A5 Silent p.I379I 0.13 TCGA-WS-AB45-01 1 77528994 77528994 T G ST6GALNAC5 3'UTR 0.24 TCGA-WS-AB45-01 1 78183702 78183702 G T USP33 Missense_Mutation p.H621N 0.09 tolerated(0.06) benign(0.026) TCGA-WS-AB45-01 1 79126358 79126358 C T IFI44 Intron 0.08 TCGA-WS-AB45-01 1 7913491 7913491 T - UTS2 Frame_Shift_Del p.M1? 0.09 TCGA-WS-AB45-01 1 85279695 85279695 T C LPAR3 Missense_Mutation p.D299G 0.20 deleterious(0) benign(0.149) TCGA-WS-AB45-01 1 8924047 8924047 T C ENO1 Missense_Mutation p.N324D 0.21 deleterious_low_confidence(0.03) benign(0.131) TCGA-WS-AB45-01 1 89449643 89449643 A G RBMXL1 5'UTR 0.17 TCGA-WS-AB45-01 1 89582685 89582685 G A GBP2 Silent p.V286V 0.13 TCGA-WS-AB45-01 1 89616247 89616247 G - GBP7 Frame_Shift_Del p.Q213Kfs*28 0.10 TCGA-WS-AB45-01 1 89651149 89651149 G A GBP4 Nonsense_Mutation p.Q571* 0.10 TCGA-WS-AB45-01 1 906351 906351 G - PLEKHN1 Frame_Shift_Del p.P195Rfs*13 0.14 TCGA-WS-AB45-01 1 9075269 9075269 G A SLC2A7 Missense_Mutation p.P208S 0.20 deleterious(0) probably_damaging(0.967) TCGA-WS-AB45-01 1 914502 914502 C T C1orf170 Silent p.P542P 0.20 TCGA-WS-AB45-01 1 92979366 92979366 G A EVI5 Silent p.H760H 0.16 TCGA-WS-AB45-01 1 9305264 9305264 G A H6PD Missense_Mutation p.A91T 0.15 tolerated(0.41) benign(0.008) TCGA-WS-AB45-01 1 94463509 94463509 A G ABCA4 Missense_Mutation p.S2213P 0.11 tolerated(0.11) benign(0.045) TCGA-WS-AB45-01 1 94650952 94650952 C T ARHGAP29 Silent p.T622T 0.12 TCGA-WS-AB45-01 1 94674869 94674869 G A ARHGAP29 Silent p.N126N 0.10 TCGA-WS-AB45-01 1 95303289 95303289 C T SLC44A3 Nonsense_Mutation p.R178* 0.08 TCGA-WS-AB45-01 1 95322961 95322961 G A SLC44A3 Silent p.S381S 0.16 TCGA-WS-AB45-01 1 95357932 95357932 T - SLC44A3 Frame_Shift_Del p.F574Lfs*4 0.13 TCGA-WS-AB45-01 20 10639113 10639113 T C JAG1 Intron 0.18 TCGA-WS-AB45-01 20 13053053 13053053 G A SPTLC3 Silent p.T151T 0.19 TCGA-WS-AB45-01 20 16352317 16352317 G A KIF16B Missense_Mutation p.T1147M 0.13 tolerated_low_confidence(0.28) benign(0.01) TCGA-WS-AB45-01 20 19674014 19674014 C T SLC24A3 Missense_Mutation p.T479M 0.14 deleterious(0) probably_damaging(0.915) TCGA-WS-AB45-01 20 19677477 19677477 G A SLC24A3 Missense_Mutation p.V510I 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 20 19955390 19955390 C T RIN2 Missense_Mutation p.R290C 0.07 deleterious(0.01) possibly_damaging(0.711) TCGA-WS-AB45-01 20 20032940 20032940 G A CRNKL1 Missense_Mutation p.A177V 0.22 tolerated(0.11) possibly_damaging(0.842) TCGA-WS-AB45-01 20 20527381 20527381 G A RALGAPA2 Silent p.A1084A 0.09 TCGA-WS-AB45-01 20 23065038 23065038 C T CD93 Missense_Mutation p.A598T 0.19 deleterious(0.02) probably_damaging(0.935) TCGA-WS-AB45-01 20 23346325 23346325 C T GZF1 Silent p.Y435Y 0.24 TCGA-WS-AB45-01 20 25206239 25206239 G A ENTPD6 3'UTR 0.08 TCGA-WS-AB45-01 20 25257962 25257962 C T PYGB Silent p.N285N 0.17 TCGA-WS-AB45-01 20 25434257 25434257 C T NINL Missense_Mutation p.D1327N 0.18 tolerated(0.17) benign(0.336) TCGA-WS-AB45-01 20 2778923 2778923 G A CPXM1 Silent p.D155D 0.11 TCGA-WS-AB45-01 20 30309568 30309568 C T BCL2L1 Missense_Mutation p.V152M 0.15 deleterious(0.04) benign(0.241) TCGA-WS-AB45-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.13 TCGA-WS-AB45-01 20 31413838 31413838 C T MAPRE1 Silent p.I35I 0.19 TCGA-WS-AB45-01 20 3146638 3146638 G A LZTS3 Silent p.S276S 0.12 TCGA-WS-AB45-01 20 3147820 3147820 G - LZTS3 5'UTR 0.11 TCGA-WS-AB45-01 20 31805379 31805379 G A BPIFA3 Missense_Mutation p.G13R 0.23 deleterious(0.01) benign(0.099) TCGA-WS-AB45-01 20 3214882 3214882 C T SLC4A11 Missense_Mutation p.V167I 0.15 tolerated(0.79) benign(0.001) TCGA-WS-AB45-01 20 32217527 32217527 G A CBFA2T2 Silent p.A354A 0.13 TCGA-WS-AB45-01 20 32378923 32378923 G A ZNF341 Missense_Mutation p.R715H 0.14 deleterious(0.01) probably_damaging(0.97) TCGA-WS-AB45-01 20 33539638 33539638 C - GSS Frame_Shift_Del p.S7Afs*9 0.10 TCGA-WS-AB45-01 20 33875518 33875518 G A FAM83C Missense_Mutation p.P355L 0.13 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 20 34246911 34246911 G A RBM12 5'UTR 0.16 TCGA-WS-AB45-01 20 35125179 35125179 A G DLGAP4 Missense_Mutation p.I574V 0.12 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 20 35632174 35632174 C T RBL1 Silent p.P989P 0.14 TCGA-WS-AB45-01 20 36572591 36572591 C T VSTM2L Missense_Mutation p.P184L 0.14 tolerated(0.31) benign(0.005) TCGA-WS-AB45-01 20 36640940 36640940 G A TTI1 Missense_Mutation p.R427W 0.15 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 20 36718237 36718237 C - RPRD1B Frame_Shift_Del p.L316Cfs*35 0.15 TCGA-WS-AB45-01 20 36775191 36775191 G A TGM2 Missense_Mutation p.R263C 0.16 deleterious(0) benign(0.249) TCGA-WS-AB45-01 20 3684518 3684518 G A SIGLEC1 Silent p.N309N 0.20 TCGA-WS-AB45-01 20 36870231 36870231 C T KIAA1755 Missense_Mutation p.R101H 0.16 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 20 37117160 37117160 G A RALGAPB Missense_Mutation p.V29I 0.17 tolerated(0.15) probably_damaging(0.996) TCGA-WS-AB45-01 20 39985725 39985725 G A LPIN3 Missense_Mutation p.V617M 0.10 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 20 39990956 39990957 - C EMILIN3 Frame_Shift_Ins p.D418Gfs*2 0.14 TCGA-WS-AB45-01 20 40054769 40054769 C A CHD6 Missense_Mutation p.G1365C 0.09 tolerated(0.06) benign(0.027) TCGA-WS-AB45-01 20 4167470 4167470 C T SMOX Intron 0.11 TCGA-WS-AB45-01 20 43629052 43629052 C T STK4 Missense_Mutation p.A284V 0.21 deleterious(0.01) benign(0.38) TCGA-WS-AB45-01 20 43850959 43850959 A G SEMG2 Missense_Mutation p.E229G 0.14 deleterious(0.01) possibly_damaging(0.848) TCGA-WS-AB45-01 20 44037027 44037027 G A DBNDD2 Missense_Mutation p.A76T 0.18 tolerated_low_confidence(0.06) benign(0.027) TCGA-WS-AB45-01 20 44507096 44507096 C T ZSWIM3 Silent p.T633T 0.12 TCGA-WS-AB45-01 20 44527005 44527005 G A CTSA Splice_Site p.X472_splice 0.17 TCGA-WS-AB45-01 20 44803267 44803267 G A CDH22 Missense_Mutation p.H789Y 0.17 deleterious(0.01) possibly_damaging(0.575) TCGA-WS-AB45-01 20 45607251 45607251 G A EYA2 Intron 0.18 TCGA-WS-AB45-01 20 45905313 45905313 C T ZMYND8 Missense_Mutation p.A409T 0.16 deleterious(0.04) possibly_damaging(0.755) TCGA-WS-AB45-01 20 46311765 46311765 C A SULF2 Missense_Mutation p.R346M 0.20 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 20 47587751 47587751 A G ARFGEF2 Missense_Mutation p.I429V 0.17 tolerated(0.42) benign(0.029) TCGA-WS-AB45-01 20 47887640 47887640 G A ZNFX1 Nonsense_Mutation p.R237* 0.21 TCGA-WS-AB45-01 20 48524894 48524894 G A SPATA2 Missense_Mutation p.A45V 0.10 tolerated(0.07) probably_damaging(0.959) TCGA-WS-AB45-01 20 49195095 49195095 G A PTPN1 Missense_Mutation p.V211I 0.16 tolerated(0.52) benign(0.004) TCGA-WS-AB45-01 20 50405493 50405493 G A SALL4 Silent p.S883S 0.12 TCGA-WS-AB45-01 20 50408029 50408029 C T SALL4 Silent p.P331P 0.29 TCGA-WS-AB45-01 20 51872267 51872267 T C TSHZ2 Missense_Mutation p.L757P 0.21 tolerated(0.08) possibly_damaging(0.815) TCGA-WS-AB45-01 20 52192324 52192324 G A ZNF217 Silent p.S993S 0.21 TCGA-WS-AB45-01 20 52831954 52831954 C T PFDN4 Missense_Mutation p.T83M 0.16 deleterious(0.02) possibly_damaging(0.634) TCGA-WS-AB45-01 20 55953093 55953093 A - RAE1 Frame_Shift_Del p.N351Ifs*12 0.15 TCGA-WS-AB45-01 20 57429301 57429301 C - GNAS Frame_Shift_Del p.P329Qfs*361 0.10 TCGA-WS-AB45-01 20 57430036 57430036 C T GNAS Silent p.S572S 0.09 TCGA-WS-AB45-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.12 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 20 57598821 57598821 C T TUBB1 Silent p.I113I 0.23 TCGA-WS-AB45-01 20 57599709 57599709 G A TUBB1 Silent p.G409G 0.18 TCGA-WS-AB45-01 20 57603806 57603806 T C ATP5E 3'UTR 0.21 TCGA-WS-AB45-01 20 57766527 57766527 C T ZNF831 Silent p.R151R 0.15 TCGA-WS-AB45-01 20 57767283 57767283 G A ZNF831 Silent p.R403R 0.14 TCGA-WS-AB45-01 20 57829632 57829632 G A ZNF831 Missense_Mutation p.R1623Q 0.19 tolerated(0.51) benign(0.065) TCGA-WS-AB45-01 20 58416560 58416560 A G PHACTR3 Silent p.K519K 0.05 TCGA-WS-AB45-01 20 58471525 58471525 T C SYCP2 Missense_Mutation p.D488G 0.15 tolerated(0.25) probably_damaging(0.968) TCGA-WS-AB45-01 20 5924860 5924860 G A TRMT6 Nonsense_Mutation p.R136* 0.12 TCGA-WS-AB45-01 20 5935262 5935262 G A MCM8 Missense_Mutation p.D88N 0.14 tolerated(0.14) benign(0.003) TCGA-WS-AB45-01 20 60740529 60740529 A G SS18L1 Missense_Mutation p.D292G 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.735) TCGA-WS-AB45-01 20 60772993 60772993 C T MTG2 Silent p.F146F 0.21 TCGA-WS-AB45-01 20 60847245 60847245 C T OSBPL2 Missense_Mutation p.T108M 0.16 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 20 60887295 60887295 G A LAMA5 Silent p.N3146N 0.17 TCGA-WS-AB45-01 20 60921614 60921614 G A LAMA5 Silent p.P410P 0.18 TCGA-WS-AB45-01 20 6093204 6093206 TTC - FERMT1 In_Frame_Del p.K152del 0.14 TCGA-WS-AB45-01 20 60991924 60991924 G A RBBP8NL Missense_Mutation p.R69W 0.22 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 20 61445021 61445021 C T OGFR 3'UTR 0.19 TCGA-WS-AB45-01 20 61510470 61510470 G A DIDO1 3'UTR 0.13 TCGA-WS-AB45-01 20 61511207 61511207 G - DIDO1 Frame_Shift_Del p.P2034Rfs*240 0.20 TCGA-WS-AB45-01 20 61511731 61511731 C T DIDO1 Silent p.P1859P 0.13 TCGA-WS-AB45-01 20 61542839 61542839 G A DIDO1 Silent p.D42D 0.19 TCGA-WS-AB45-01 20 61637737 61637737 G A BHLHE23 Silent p.H114H 0.20 TCGA-WS-AB45-01 20 61943277 61943277 C - COL20A1 Frame_Shift_Del p.P560Rfs*9 0.14 TCGA-WS-AB45-01 20 61950424 61950424 C - COL20A1 Frame_Shift_Del p.L895Yfs*27 0.14 TCGA-WS-AB45-01 20 62201602 62201602 C T HELZ2 Intron 0.21 TCGA-WS-AB45-01 20 62365028 62365028 C T ZGPAT Missense_Mutation p.R270C 0.14 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 20 62421387 62421387 C T ZBTB46 Missense_Mutation p.E242K 0.16 tolerated(0.13) possibly_damaging(0.453) TCGA-WS-AB45-01 20 62595478 62595478 C T ZNF512B Missense_Mutation p.A476T 0.14 tolerated(0.4) benign(0.001) TCGA-WS-AB45-01 20 62729847 62729847 G A OPRL1 Missense_Mutation p.A270T 0.10 tolerated(0.08) possibly_damaging(0.63) TCGA-WS-AB45-01 20 62863565 62863565 C T MYT1 Silent p.Y908Y 0.11 TCGA-WS-AB45-01 20 9560802 9560802 C T PAK7 Missense_Mutation p.C327Y 0.15 tolerated(1) possibly_damaging(0.459) TCGA-WS-AB45-01 21 30426572 30426572 A - USP16 3'UTR 0.16 TCGA-WS-AB45-01 21 31692585 31692585 G A KRTAP26-1 5'UTR 0.17 TCGA-WS-AB45-01 21 32595763 32595763 C A TIAM1 Missense_Mutation p.G652C 0.14 deleterious(0.01) benign(0.085) TCGA-WS-AB45-01 21 32638640 32638640 G A TIAM1 Missense_Mutation p.R217W 0.11 deleterious_low_confidence(0.04) benign(0.167) TCGA-WS-AB45-01 21 33065708 33065708 C T SCAF4 Missense_Mutation p.R471Q 0.17 benign(0.238) TCGA-WS-AB45-01 21 33318425 33318425 G A HUNK Missense_Mutation p.A230T 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-WS-AB45-01 21 33975570 33975570 C T AP000275.65 Silent p.A189A 0.16 TCGA-WS-AB45-01 21 34133450 34133450 C T PAXBP1 Missense_Mutation p.A299T 0.15 tolerated(0.17) possibly_damaging(0.843) TCGA-WS-AB45-01 21 34169303 34169317 AGGATATTGGTTTGC GGATATTGGTTTGCT C21orf49 Missense_Mutation p.RILVC63GYWFA 0.10 TCGA-WS-AB45-01 21 34399536 34399536 C T OLIG2 Silent p.H122H 0.15 TCGA-WS-AB45-01 21 34442866 34442866 A T OLIG1 Missense_Mutation p.Q105L 0.09 deleterious(0.04) benign(0.001) TCGA-WS-AB45-01 21 34932398 34932398 A T SON Intron 0.18 TCGA-WS-AB45-01 21 35275844 35275844 G A ATP5O Missense_Mutation p.R210W 0.11 tolerated(0.16) benign(0.001) TCGA-WS-AB45-01 21 35476323 35476324 - C SLC5A3 3'UTR 0.14 TCGA-WS-AB45-01 21 36231833 36231833 G A RUNX1 Missense_Mutation p.P184L 0.14 deleterious(0) probably_damaging(0.994) TCGA-WS-AB45-01 21 37416033 37416034 - A SETD4 Intron 0.12 TCGA-WS-AB45-01 21 37612114 37612114 T C DOPEY2 Silent p.G976G 0.13 TCGA-WS-AB45-01 21 39795450 39795450 G A ERG Silent p.G97G 0.14 TCGA-WS-AB45-01 21 40558989 40558990 AA - BRWD1 Frame_Shift_Del p.L2309Kfs*18 0.14 TCGA-WS-AB45-01 21 40714867 40714867 A - HMGN1 3'UTR 0.44 TCGA-WS-AB45-01 21 41385141 41385143 GGA - DSCAM In_Frame_Del p.S1953del 0.11 TCGA-WS-AB45-01 21 43166870 43166870 C T RIPK4 Silent p.P245P 0.14 TCGA-WS-AB45-01 21 43241553 43241553 G A PRDM15 Missense_Mutation p.H1010Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 21 43281738 43281738 G A PRDM15 Silent p.S275S 0.09 TCGA-WS-AB45-01 21 43792781 43792781 C T TMPRSS3 3'UTR 0.14 TCGA-WS-AB45-01 21 43913147 43913147 G A RSPH1 Missense_Mutation p.R33C 0.13 tolerated(0.06) unknown(0) TCGA-WS-AB45-01 21 44590651 44590651 G A CRYAA Missense_Mutation p.V72I 0.16 tolerated(0.39) benign(0.007) TCGA-WS-AB45-01 21 44839300 44839300 G A SIK1 Missense_Mutation p.P393L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-WS-AB45-01 21 45175934 45175934 C T PDXK Missense_Mutation p.T310M 0.17 deleterious(0.01) benign(0.026) TCGA-WS-AB45-01 21 45217901 45217901 C T RRP1 Missense_Mutation p.A244V 0.18 tolerated(0.34) benign(0.006) TCGA-WS-AB45-01 21 45987864 45987864 C T TSPEAR Silent p.A36A 0.17 TCGA-WS-AB45-01 21 46319010 46319010 A G ITGB2 Missense_Mutation p.V322A 0.15 deleterious(0) probably_damaging(0.983) TCGA-WS-AB45-01 21 46328049 46328049 G A ITGB2 Intron 0.15 TCGA-WS-AB45-01 21 46697025 46697025 C T POFUT2 Silent p.L246L 0.14 TCGA-WS-AB45-01 21 46842526 46842526 C T COL18A1-AS1 RNA 0.14 TCGA-WS-AB45-01 21 47423834 47423834 C T COL6A1 Silent p.Y998Y 0.17 TCGA-WS-AB45-01 21 47552203 47552203 C T COL6A2 Missense_Mutation p.R933C 0.18 deleterious(0.04) possibly_damaging(0.79) TCGA-WS-AB45-01 21 47581964 47581964 C T SPATC1L Missense_Mutation p.G188S 0.21 tolerated(0.45) benign(0.036) TCGA-WS-AB45-01 21 47766656 47766656 G A PCNT Splice_Site p.X241_splice 0.11 TCGA-WS-AB45-01 21 47783761 47783761 C T PCNT Missense_Mutation p.R841W 0.19 possibly_damaging(0.876) TCGA-WS-AB45-01 21 47786958 47786958 C T PCNT Silent p.H1023H 0.23 TCGA-WS-AB45-01 21 48069493 48069493 G A PRMT2 Missense_Mutation p.A166T 0.09 deleterious(0) probably_damaging(0.916) TCGA-WS-AB45-01 22 18220870 18220870 C T BID Silent p.T209T 0.12 TCGA-WS-AB45-01 22 18300931 18300932 - GG MICAL3 Frame_Shift_Ins p.R1499Pfs*107 0.13 TCGA-WS-AB45-01 22 18561448 18561448 C A PEX26 Intron 0.10 TCGA-WS-AB45-01 22 19423422 19423422 A G MRPL40 Silent p.Q186Q 0.16 TCGA-WS-AB45-01 22 19434940 19434940 G A C22orf39 Silent p.S88S 0.25 TCGA-WS-AB45-01 22 19495012 19495012 C T CDC45 Missense_Mutation p.R342W 0.17 deleterious(0) probably_damaging(0.948) TCGA-WS-AB45-01 22 19799918 19799918 C T GNB1L Missense_Mutation p.A103T 0.16 tolerated(0.7) benign(0.001) TCGA-WS-AB45-01 22 20303693 20303693 G A DGCR6L Silent p.C107C 0.13 TCGA-WS-AB45-01 22 20784821 20784821 C T SCARF2 Missense_Mutation p.G366D 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-WS-AB45-01 22 20909385 20909385 C T MED15 Missense_Mutation p.S134L 0.11 deleterious_low_confidence(0.03) unknown(0) TCGA-WS-AB45-01 22 21328111 21328111 G A AIFM3 Missense_Mutation p.A104T 0.13 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 22 21344748 21344748 T A LZTR1 Missense_Mutation p.V242E 0.14 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 22 21346115 21346115 C T LZTR1 Silent p.S330S 0.09 TCGA-WS-AB45-01 22 21348011 21348011 C T LZTR1 Nonsense_Mutation p.Q441* 0.10 TCGA-WS-AB45-01 22 21470303 21470303 C T KB-1592A4.15 RNA 0.18 TCGA-WS-AB45-01 22 21742742 21742742 C T RIMBP3B Missense_Mutation p.P1532L 0.07 tolerated(0.31) benign(0.042) TCGA-WS-AB45-01 22 21799659 21799659 C - HIC2 Frame_Shift_Del p.R161Afs*113 0.15 TCGA-WS-AB45-01 22 22280009 22280009 C A PPM1F Missense_Mutation p.L306F 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 22 22786618 22786618 C T IGLV1-36 Silent p.Y56Y 0.20 TCGA-WS-AB45-01 22 22893495 22893495 C T PRAME Missense_Mutation p.R13Q 0.14 tolerated(0.05) possibly_damaging(0.638) TCGA-WS-AB45-01 22 23248709 23248709 G A IGLC3 Missense_Mutation p.A67T 0.07 benign(0.013) TCGA-WS-AB45-01 22 23466442 23466442 A - RTDR1 Intron 0.23 TCGA-WS-AB45-01 22 23501371 23501371 G A RAB36 Missense_Mutation p.A250T 0.17 tolerated(0.74) benign(0.01) TCGA-WS-AB45-01 22 23524119 23524119 C T BCR Silent p.C324C 0.27 TCGA-WS-AB45-01 22 24167594 24167594 C T SMARCB1 Silent p.Y326Y 0.10 TCGA-WS-AB45-01 22 24220040 24220040 C T SLC2A11 Silent p.T230T 0.11 TCGA-WS-AB45-01 22 24481077 24481077 T C CABIN1 Missense_Mutation p.M1079T 0.11 deleterious(0.02) benign(0.374) TCGA-WS-AB45-01 22 24583695 24583695 G A SUSD2 Missense_Mutation p.C683Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 22 24628911 24628911 C T GGT5 Nonsense_Mutation p.W159* 0.18 TCGA-WS-AB45-01 22 24629531 24629531 G A GGT5 Missense_Mutation p.T112M 0.12 deleterious(0.01) benign(0.305) TCGA-WS-AB45-01 22 25263061 25263061 G A SGSM1 Missense_Mutation p.V310I 0.11 tolerated(0.2) benign(0.391) TCGA-WS-AB45-01 22 25755944 25755944 A G LRP5L Missense_Mutation p.I39T 0.20 deleterious(0) probably_damaging(0.973) TCGA-WS-AB45-01 22 26164497 26164497 G A MYO18B Missense_Mutation p.S205N 0.20 tolerated_low_confidence(0.1) benign(0.009) TCGA-WS-AB45-01 22 26193954 26193954 C T MYO18B Missense_Mutation p.A804V 0.12 tolerated(0.12) benign(0.119) TCGA-WS-AB45-01 22 26830012 26830012 G A ASPHD2 Missense_Mutation p.R144H 0.18 deleterious(0) possibly_damaging(0.908) TCGA-WS-AB45-01 22 26997843 26997843 G A CRYBB1 Missense_Mutation p.T192I 0.15 deleterious(0) possibly_damaging(0.843) TCGA-WS-AB45-01 22 27024395 27024395 G A CRYBA4 Splice_Site p.X148_splice 0.13 TCGA-WS-AB45-01 22 28194964 28194964 T C MN1 Missense_Mutation p.Q523R 0.11 benign(0.145) TCGA-WS-AB45-01 22 28503862 28503862 G A TTC28 Silent p.Y657Y 0.16 TCGA-WS-AB45-01 22 29563147 29563147 C T KREMEN1 3'UTR 0.20 TCGA-WS-AB45-01 22 30639847 30639847 G A LIF Silent p.H134H 0.12 TCGA-WS-AB45-01 22 31524094 31524094 C T INPP5J Intron 0.17 TCGA-WS-AB45-01 22 32108842 32108842 G A PRR14L Silent p.D1661D 0.14 TCGA-WS-AB45-01 22 32109720 32109720 C T PRR14L Missense_Mutation p.V1369M 0.17 tolerated(0.14) benign(0.001) TCGA-WS-AB45-01 22 32215189 32215189 C A DEPDC5 Silent p.R616R 0.12 TCGA-WS-AB45-01 22 32914221 32914221 G A SYN3 Silent p.S473S 0.15 TCGA-WS-AB45-01 22 35783151 35783151 G A HMOX1 Silent p.A206A 0.19 TCGA-WS-AB45-01 22 36892085 36892085 C A FOXRED2 Missense_Mutation p.G518V 0.06 deleterious(0) benign(0.382) TCGA-WS-AB45-01 22 37912239 37912239 C T CARD10 Missense_Mutation p.R147H 0.22 tolerated(0.48) probably_damaging(0.973) TCGA-WS-AB45-01 22 38005213 38005213 A T GGA1 Intron 0.19 TCGA-WS-AB45-01 22 38212630 38212630 C T GCAT Missense_Mutation p.R415W 0.17 deleterious(0.02) possibly_damaging(0.509) TCGA-WS-AB45-01 22 38374119 38374119 C T SOX10 Missense_Mutation p.R151H 0.12 deleterious(0) probably_damaging(0.991) TCGA-WS-AB45-01 22 38897157 38897157 G A DDX17 Missense_Mutation p.P139L 0.13 deleterious(0.01) benign(0.052) TCGA-WS-AB45-01 22 39134680 39134680 C T SUN2 Missense_Mutation p.R641H 0.11 tolerated(0.16) benign(0.291) TCGA-WS-AB45-01 22 39178685 39178685 T C DNAL4 Missense_Mutation p.T18A 0.14 tolerated(0.05) benign(0.061) TCGA-WS-AB45-01 22 39909769 39909769 C A MIEF1 Missense_Mutation p.A278D 0.14 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 22 40367141 40367141 C T GRAP2 3'UTR 0.12 TCGA-WS-AB45-01 22 40754895 40754895 A G ADSL Silent p.K170K 0.09 TCGA-WS-AB45-01 22 40802115 40802115 C - SGSM3 Frame_Shift_Del p.T283Rfs*42 0.13 TCGA-WS-AB45-01 22 41322333 41322333 G A XPNPEP3 Missense_Mutation p.R473Q 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 22 41537142 41537142 A C EP300 Missense_Mutation p.M657L 0.15 unknown(0) TCGA-WS-AB45-01 22 41623157 41623157 G A L3MBTL2 Missense_Mutation p.R551Q 0.17 deleterious(0) benign(0.223) TCGA-WS-AB45-01 22 41650387 41650387 T C RANGAP1 Silent p.E395E 0.10 TCGA-WS-AB45-01 22 41654081 41654081 C T RANGAP1 Missense_Mutation p.M215I 0.08 deleterious(0.01) possibly_damaging(0.77) TCGA-WS-AB45-01 22 41922447 41922447 G A ACO2 Missense_Mutation p.R648H 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-WS-AB45-01 22 41923324 41923324 C T ACO2 Silent p.D662D 0.15 TCGA-WS-AB45-01 22 42033655 42033655 T C XRCC6 Silent p.F211F 0.11 TCGA-WS-AB45-01 22 42525036 42525036 G A CYP2D6 Silent p.S168S 0.19 TCGA-WS-AB45-01 22 43275113 43275113 G A PACSIN2 Silent p.G323G 0.09 TCGA-WS-AB45-01 22 43610116 43610116 C T SCUBE1 Missense_Mutation p.R678H 0.21 tolerated(0.16) benign(0.013) TCGA-WS-AB45-01 22 43950910 43950910 C T EFCAB6 Missense_Mutation p.D1163N 0.15 tolerated(1) benign(0) TCGA-WS-AB45-01 22 44351472 44351472 C T SAMM50 Silent p.H5H 0.16 TCGA-WS-AB45-01 22 45607886 45607886 C T KIAA0930 Missense_Mutation p.R61H 0.10 deleterious(0.05) possibly_damaging(0.616) TCGA-WS-AB45-01 22 46653562 46653562 A - PKDREJ Frame_Shift_Del p.P1887Qfs*10 0.12 TCGA-WS-AB45-01 22 46777804 46777804 T C CELSR1 Missense_Mutation p.I2343V 0.07 tolerated(0.49) benign(0.034) TCGA-WS-AB45-01 22 47072550 47072550 G A GRAMD4 Silent p.T539T 0.15 TCGA-WS-AB45-01 22 47188473 47188473 C T TBC1D22A Missense_Mutation p.T40I 0.21 deleterious(0.03) benign(0.436) TCGA-WS-AB45-01 22 47507446 47507446 G A TBC1D22A Missense_Mutation p.A458T 0.13 deleterious(0) probably_damaging(0.978) TCGA-WS-AB45-01 22 50217299 50217299 C T BRD1 Missense_Mutation p.G223R 0.15 deleterious(0) probably_damaging(0.994) TCGA-WS-AB45-01 22 50278066 50278066 G - ZBED4 Frame_Shift_Del p.S254Rfs*17 0.13 TCGA-WS-AB45-01 22 50301477 50301477 G A ALG12 Missense_Mutation p.A295V 0.16 benign(0.183) TCGA-WS-AB45-01 22 50506894 50506894 C G MLC1 Missense_Mutation p.E288Q 0.15 deleterious_low_confidence(0.05) probably_damaging(0.995) TCGA-WS-AB45-01 22 50682851 50682851 T C TUBGCP6 Missense_Mutation p.E13G 0.26 deleterious(0) possibly_damaging(0.666) TCGA-WS-AB45-01 22 50687845 50687845 C T HDAC10 Missense_Mutation p.R201H 0.20 tolerated(0.14) benign(0.053) TCGA-WS-AB45-01 22 50708708 50708708 C T MAPK11 Missense_Mutation p.R5H 0.18 deleterious(0) benign(0.041) TCGA-WS-AB45-01 22 50719007 50719008 CA - PLXNB2 Frame_Shift_Del p.L1362Rfs*32 0.09 TCGA-WS-AB45-01 22 50721566 50721566 C T PLXNB2 Missense_Mutation p.G910D 0.15 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 22 50903012 50903013 - G SBF1 Frame_Shift_Ins p.A530Sfs*46 0.14 TCGA-WS-AB45-01 22 50903469 50903470 CT - SBF1 Frame_Shift_Del p.E431Afs*13 0.09 TCGA-WS-AB45-01 22 50965144 50965144 C T TYMP Silent p.G263G 0.19 TCGA-WS-AB45-01 22 51143212 51143212 G A SHANK3 Silent p.A622A 0.16 TCGA-WS-AB45-01 2 100900942 100900942 C T LONRF2 Missense_Mutation p.G695S 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 2 101654063 101654063 C T TBC1D8 Silent p.P446P 0.20 TCGA-WS-AB45-01 2 102476136 102476136 G T MAP4K4 Missense_Mutation p.R505L 0.12 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-WS-AB45-01 2 102851697 102851697 G A IL1RL2 Silent p.P546P 0.17 TCGA-WS-AB45-01 2 102957278 102957278 C T IL1RL1 Silent p.F200F 0.15 TCGA-WS-AB45-01 2 102968168 102968168 C T IL1RL1 Silent p.S486S 0.14 TCGA-WS-AB45-01 2 103068462 103068462 G T IL18RAP Missense_Mutation p.G541C 0.10 deleterious(0) probably_damaging(0.987) TCGA-WS-AB45-01 2 105915145 105915145 C T TGFBRAP1 Missense_Mutation p.A236T 0.08 tolerated(0.22) benign(0.106) TCGA-WS-AB45-01 2 108626987 108626988 TA - SLC5A7 Frame_Shift_Del p.Y473* 0.11 TCGA-WS-AB45-01 2 109068871 109068871 T C GCC2 Silent p.I55I 0.13 TCGA-WS-AB45-01 2 10931954 10931954 T G PDIA6 Missense_Mutation p.E184A 0.11 deleterious(0.04) probably_damaging(0.997) TCGA-WS-AB45-01 2 109513592 109513592 G A EDAR Missense_Mutation p.T373M 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 2 111907692 111907692 G A BCL2L11 Missense_Mutation p.G156R 0.16 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 2 112630586 112630586 A - ANAPC1 Intron 0.12 TCGA-WS-AB45-01 2 112786340 112786340 G A MERTK Missense_Mutation p.V967I 0.15 tolerated_low_confidence(0.39) benign(0.002) TCGA-WS-AB45-01 2 112786387 112786387 C T MERTK Silent p.P982P 0.15 TCGA-WS-AB45-01 2 112945074 112945074 T C FBLN7 Silent p.Y437Y 0.20 TCGA-WS-AB45-01 2 113243553 113243553 C T TTL Missense_Mutation p.R73C 0.12 deleterious(0) probably_damaging(0.994) TCGA-WS-AB45-01 2 113317120 113317120 G A POLR1B Silent p.T527T 0.18 TCGA-WS-AB45-01 2 113588904 113588904 C T IL1B Missense_Mutation p.V188M 0.14 deleterious(0.02) possibly_damaging(0.747) TCGA-WS-AB45-01 2 115919758 115919758 G A DPP10 Intron 0.13 TCGA-WS-AB45-01 2 116535366 116535367 - T DPP10 Frame_Shift_Ins p.L445Sfs*4 0.13 TCGA-WS-AB45-01 2 11732904 11732904 G A GREB1 Missense_Mutation p.A450T 0.15 tolerated(0.17) probably_damaging(0.959) TCGA-WS-AB45-01 2 11778850 11778850 G A GREB1 Silent p.S1867S 0.17 TCGA-WS-AB45-01 2 120799581 120799582 - A EPB41L5 Frame_Shift_Ins p.A63Sfs*8 0.09 TCGA-WS-AB45-01 2 121744005 121744005 G A GLI2 Missense_Mutation p.G703E 0.14 tolerated(0.28) probably_damaging(1) TCGA-WS-AB45-01 2 122273258 122273258 T - CLASP1 Frame_Shift_Del p.G210Dfs*7 0.14 TCGA-WS-AB45-01 2 128096511 128096511 T - MAP3K2 Frame_Shift_Del p.K40Nfs*29 0.09 TCGA-WS-AB45-01 2 128238662 128238662 G A IWS1 Silent p.H806H 0.10 TCGA-WS-AB45-01 2 128471346 128471346 G A WDR33 Missense_Mutation p.P1040L 0.19 tolerated_low_confidence(0.33) probably_damaging(0.931) TCGA-WS-AB45-01 2 130939884 130939885 - G MZT2B Frame_Shift_Ins p.S12Vfs*170 0.18 TCGA-WS-AB45-01 2 130948092 130948092 C T MZT2B Missense_Mutation p.R124C 0.15 tolerated(0.1) benign(0.115) TCGA-WS-AB45-01 2 131130804 131130804 C T PTPN18 3'UTR 0.10 TCGA-WS-AB45-01 2 131486772 131486772 G A GPR148 Silent p.P16P 0.14 TCGA-WS-AB45-01 2 131521170 131521170 G A AMER3 Missense_Mutation p.V509I 0.15 tolerated(1) benign(0.019) TCGA-WS-AB45-01 2 132240376 132240376 C T TUBA3D Silent p.G436G 0.08 TCGA-WS-AB45-01 2 133541148 133541148 G A NCKAP5 Missense_Mutation p.T1079M 0.12 deleterious(0.05) benign(0.235) TCGA-WS-AB45-01 2 136505913 136505913 T C UBXN4 Silent p.F53F 0.09 TCGA-WS-AB45-01 2 136564939 136564939 C T LCT Missense_Mutation p.R1311Q 0.11 tolerated(0.1) benign(0.26) TCGA-WS-AB45-01 2 138739005 138739005 A C HNMT Intron 0.20 TCGA-WS-AB45-01 2 141283521 141283521 T - LRP1B Frame_Shift_Del p.T2640Pfs*5 0.13 TCGA-WS-AB45-01 2 141643871 141643871 C T LRP1B Missense_Mutation p.R1267H 0.12 possibly_damaging(0.522) TCGA-WS-AB45-01 2 1459995 1459995 G A TPO Missense_Mutation p.G254R 0.20 tolerated(0.53) benign(0.022) TCGA-WS-AB45-01 2 149853788 149853788 C T KIF5C Silent p.H678H 0.10 TCGA-WS-AB45-01 2 152301934 152301934 T - RIF1 Frame_Shift_Del p.S692Qfs*10 0.12 TCGA-WS-AB45-01 2 152321641 152321641 G A RIF1 Silent p.S1869S 0.20 TCGA-WS-AB45-01 2 152322136 152322136 C T RIF1 Silent p.G2034G 0.16 TCGA-WS-AB45-01 2 152471009 152471009 A G NEB Silent p.H3794H 0.11 TCGA-WS-AB45-01 2 157186321 157186321 C A NR4A2 Silent p.S126S 0.08 TCGA-WS-AB45-01 2 159481845 159481845 A C PKP4 Silent p.S353S 0.13 TCGA-WS-AB45-01 2 160132065 160132065 T C WDSUB1 Missense_Mutation p.H223R 0.17 tolerated(0.49) benign(0.001) TCGA-WS-AB45-01 2 16082462 16082462 C T MYCN Silent p.A92A 0.15 TCGA-WS-AB45-01 2 16082795 16082795 G A MYCN Silent p.A203A 0.11 TCGA-WS-AB45-01 2 162061291 162061291 A - TANK Frame_Shift_Del p.K106Nfs*5 0.11 TCGA-WS-AB45-01 2 162929926 162929926 A G DPP4 Missense_Mutation p.V26A 0.21 tolerated(0.27) benign(0.119) TCGA-WS-AB45-01 2 163044871 163044871 T C FAP Missense_Mutation p.Y541C 0.18 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 2 163128800 163128800 T C IFIH1 Missense_Mutation p.E851G 0.11 deleterious(0) possibly_damaging(0.864) TCGA-WS-AB45-01 2 164468132 164468132 T - FIGN Frame_Shift_Del p.K70Nfs*29 0.15 TCGA-WS-AB45-01 2 165811725 165811725 C T SLC38A11 5'UTR 0.13 TCGA-WS-AB45-01 2 165972038 165972040 AAC - SCN3A In_Frame_Del p.V1147del 0.12 TCGA-WS-AB45-01 2 166535376 166535376 T C CSRNP3 Missense_Mutation p.C291R 0.15 tolerated(0.3) possibly_damaging(0.563) TCGA-WS-AB45-01 2 166868662 166868662 T C SCN1A Missense_Mutation p.Y1279C 0.12 deleterious(0) probably_damaging(0.981) TCGA-WS-AB45-01 2 166900379 166900379 C T SCN1A Missense_Mutation p.G615R 0.14 tolerated(0.26) benign(0.06) TCGA-WS-AB45-01 2 166911147 166911147 C T SCN1A Splice_Site p.X201_splice 0.10 TCGA-WS-AB45-01 2 168102506 168102506 A G XIRP2 Missense_Mutation p.H1535R 0.11 probably_damaging(0.956) TCGA-WS-AB45-01 2 168106064 168106064 C T XIRP2 Missense_Mutation p.T2721I 0.11 possibly_damaging(0.555) TCGA-WS-AB45-01 2 168725511 168725511 G A B3GALT1 5'UTR 0.13 TCGA-WS-AB45-01 2 169792938 169792938 G A ABCB11 Silent p.A872A 0.17 TCGA-WS-AB45-01 2 169985331 169985331 C T LRP2 Missense_Mutation p.E4604K 0.16 possibly_damaging(0.495) TCGA-WS-AB45-01 2 170394636 170394636 C T FASTKD1 Missense_Mutation p.R654Q 0.10 deleterious(0.04) benign(0) TCGA-WS-AB45-01 2 171822554 171822554 G A GORASP2 Missense_Mutation p.V425I 0.10 tolerated_low_confidence(0.14) benign(0.094) TCGA-WS-AB45-01 2 172582744 172582744 T - DYNC1I2 Frame_Shift_Del p.F272Lfs*47 0.12 TCGA-WS-AB45-01 2 172967178 172967178 G - DLX2 Frame_Shift_Del p.P30Rfs*115 0.18 TCGA-WS-AB45-01 2 175629111 175629111 C A CHRNA1 Missense_Mutation p.W4C 0.16 tolerated(0.17) benign(0.078) TCGA-WS-AB45-01 2 175957789 175957789 C A ATF2 Missense_Mutation p.Q395H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 2 17698713 17698713 A - RAD51AP2 Frame_Shift_Del p.S324Pfs*22 0.10 TCGA-WS-AB45-01 2 179399067 179399067 C T TTN Missense_Mutation p.R34092H 0.16 TCGA-WS-AB45-01 2 179415932 179415932 T C TTN Silent p.K30442K 0.22 TCGA-WS-AB45-01 2 179422410 179422412 ATA G TTN Frame_Shift_Del p.I29224Rfs*24 0.15 TCGA-WS-AB45-01 2 179474816 179474816 C T TTN Splice_Site p.X17146_splice 0.12 TCGA-WS-AB45-01 2 179574366 179574366 G A TTN Silent p.D9560D 0.15 TCGA-WS-AB45-01 2 179578857 179578857 G A TTN Missense_Mutation p.T8843M 0.12 TCGA-WS-AB45-01 2 179587660 179587660 C T TTN Silent p.P7322P 0.19 TCGA-WS-AB45-01 2 179590326 179590326 C A TTN Nonsense_Mutation p.E6869* 0.14 TCGA-WS-AB45-01 2 179770194 179770194 A C CCDC141 Missense_Mutation p.L376R 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-WS-AB45-01 2 182781108 182781108 G A SSFA2 Missense_Mutation p.R914Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 2 1895973 1895973 C T MYT1L Missense_Mutation p.G705R 0.16 deleterious(0.01) possibly_damaging(0.896) TCGA-WS-AB45-01 2 189917715 189917715 A G COL5A2 Silent p.G861G 0.10 TCGA-WS-AB45-01 2 189917730 189917730 C T COL5A2 Silent p.Q856Q 0.16 TCGA-WS-AB45-01 2 190656595 190656595 G A PMS1 Silent p.S20S 0.07 TCGA-WS-AB45-01 2 191365009 191365009 C - MFSD6 3'UTR 0.11 TCGA-WS-AB45-01 2 192214932 192214934 AGG - MYO1B In_Frame_Del p.G183del 0.13 TCGA-WS-AB45-01 2 192821027 192821027 G A TMEFF2 Missense_Mutation p.H275Y 0.11 deleterious(0) probably_damaging(0.986) TCGA-WS-AB45-01 2 192821098 192821098 G A TMEFF2 Missense_Mutation p.A251V 0.07 tolerated(0.3) benign(0.002) TCGA-WS-AB45-01 2 193059205 193059206 AA - TMEFF2 Frame_Shift_Del p.C16Rfs*31 0.10 TCGA-WS-AB45-01 2 196545620 196545620 G A SLC39A10 Missense_Mutation p.R285H 0.15 tolerated(0.46) benign(0) TCGA-WS-AB45-01 2 197183662 197183662 G A HECW2 Missense_Mutation p.T651M 0.16 tolerated_low_confidence(0.21) benign(0.151) TCGA-WS-AB45-01 2 197541349 197541349 A - CCDC150 Frame_Shift_Del p.E447Sfs*3 0.13 TCGA-WS-AB45-01 2 20133176 20133176 C T WDR35 Missense_Mutation p.V893I 0.10 tolerated(0.09) probably_damaging(0.987) TCGA-WS-AB45-01 2 201369589 201369589 C T KCTD18 Missense_Mutation p.R85H 0.14 deleterious(0.02) probably_damaging(0.98) TCGA-WS-AB45-01 2 201677962 201677962 A G BZW1 Missense_Mutation p.K40E 0.23 deleterious(0) possibly_damaging(0.682) TCGA-WS-AB45-01 2 202566414 202566414 G A ALS2 3'UTR 0.12 TCGA-WS-AB45-01 2 203397408 203397408 G T BMPR2 Missense_Mutation p.G410V 0.12 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 2 203762058 203762058 G A WDR12 Missense_Mutation p.T140M 0.20 deleterious(0.04) possibly_damaging(0.614) TCGA-WS-AB45-01 2 204039867 204039867 C T NBEAL1 Intron 0.11 TCGA-WS-AB45-01 2 20451242 20451242 A - PUM2 3'UTR 0.23 TCGA-WS-AB45-01 2 205990411 205990411 G A PARD3B Missense_Mutation p.A462T 0.15 deleterious(0.02) benign(0.381) TCGA-WS-AB45-01 2 206165385 206165385 C T PARD3B Nonsense_Mutation p.R711* 0.12 TCGA-WS-AB45-01 2 20647730 20647730 C A RHOB Silent p.R168R 0.15 TCGA-WS-AB45-01 2 206921042 206921042 G A INO80D Missense_Mutation p.R282W 0.19 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-WS-AB45-01 2 207509343 207509343 C T AC010731.4 RNA 0.16 TCGA-WS-AB45-01 2 207516533 207516533 G A DYTN 3'UTR 0.16 TCGA-WS-AB45-01 2 210832205 210832205 A G UNC80 Missense_Mutation p.D2551G 0.12 probably_damaging(0.994) TCGA-WS-AB45-01 2 211018375 211018375 T - KANSL1L Frame_Shift_Del p.N311Mfs*63 0.10 TCGA-WS-AB45-01 2 213403254 213403254 T - ERBB4 Frame_Shift_Del p.M1? 0.16 TCGA-WS-AB45-01 2 216289973 216289973 A G FN1 Missense_Mutation p.Y294H 0.17 tolerated(0.14) benign(0.394) TCGA-WS-AB45-01 2 216946480 216946480 C T PECR 5'UTR 0.15 TCGA-WS-AB45-01 2 217280119 217280119 A - SMARCAL1 Frame_Shift_Del p.G233Efs*2 0.13 TCGA-WS-AB45-01 2 218678511 218678511 C T TNS1 Silent p.P1482P 0.13 TCGA-WS-AB45-01 2 218683225 218683225 G A TNS1 Missense_Mutation p.T1173M 0.11 tolerated(0.27) benign(0.002) TCGA-WS-AB45-01 2 219118661 219118661 C T ARPC2 3'UTR 0.12 TCGA-WS-AB45-01 2 219134365 219134365 G T AAMP Intron 0.26 TCGA-WS-AB45-01 2 219209847 219209847 G T PNKD 3'UTR 0.19 TCGA-WS-AB45-01 2 219222749 219222749 C A C2orf62 Intron 0.17 TCGA-WS-AB45-01 2 219227578 219227578 C T C2orf62 Missense_Mutation p.R195C 0.13 tolerated(0.22) benign(0.034) TCGA-WS-AB45-01 2 219449364 219449364 T - RQCD1 Frame_Shift_Del p.L119Cfs*29 0.11 TCGA-WS-AB45-01 2 219500528 219500528 G A PLCD4 Missense_Mutation p.G636S 0.16 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 2 219507862 219507862 C - ZNF142 Frame_Shift_Del p.G1126Afs*25 0.11 TCGA-WS-AB45-01 2 219611857 219611857 C T TTLL4 Silent p.D702D 0.19 TCGA-WS-AB45-01 2 220073103 220073103 T C ZFAND2B Intron 0.12 TCGA-WS-AB45-01 2 220149398 220149398 G A DNAJB2 Missense_Mutation p.E222K 0.19 tolerated(0.05) probably_damaging(0.994) TCGA-WS-AB45-01 2 220162681 220162681 G A PTPRN Missense_Mutation p.R605W 0.19 deleterious(0.01) possibly_damaging(0.884) TCGA-WS-AB45-01 2 220283417 220283417 G A DES Missense_Mutation p.R78H 0.17 tolerated(0.05) benign(0.112) TCGA-WS-AB45-01 2 220285032 220285032 C T DES Silent p.N233N 0.18 TCGA-WS-AB45-01 2 220400004 220400004 G A ASIC4 Missense_Mutation p.R504Q 0.19 deleterious(0) probably_damaging(0.915) TCGA-WS-AB45-01 2 220427145 220427145 A C OBSL1 Missense_Mutation p.S978A 0.08 tolerated(0.5) possibly_damaging(0.611) TCGA-WS-AB45-01 2 220472884 220472884 G A STK11IP Silent p.P456P 0.18 TCGA-WS-AB45-01 2 220493253 220493253 G A SLC4A3 Missense_Mutation p.E60K 0.17 deleterious_low_confidence(0.01) benign(0.213) TCGA-WS-AB45-01 2 222429082 222429083 - T EPHA4 Frame_Shift_Ins p.N64Kfs*19 0.14 TCGA-WS-AB45-01 2 223096930 223096930 C T PAX3 Missense_Mutation p.R220H 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 2 224640670 224640670 G A AP1S3 Missense_Mutation p.T80M 0.11 deleterious(0.03) probably_damaging(0.933) TCGA-WS-AB45-01 2 224642546 224642546 C T AP1S3 Missense_Mutation p.R15Q 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-WS-AB45-01 2 224824449 224824449 C T MRPL44 Silent p.S126S 0.16 TCGA-WS-AB45-01 2 224840553 224840553 G A SERPINE2 3'UTR 0.10 TCGA-WS-AB45-01 2 225710315 225710315 A G DOCK10 Silent p.I760I 0.09 TCGA-WS-AB45-01 2 228769738 228769738 G A DAW1 Missense_Mutation p.A248T 0.08 tolerated(0.34) benign(0.003) TCGA-WS-AB45-01 2 230655887 230655887 G A TRIP12 Missense_Mutation p.T1424M 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-WS-AB45-01 2 230724181 230724181 G A TRIP12 Nonsense_Mutation p.R70* 0.19 TCGA-WS-AB45-01 2 232087511 232087511 C T ARMC9 Missense_Mutation p.T192M 0.08 deleterious(0.04) benign(0.188) TCGA-WS-AB45-01 2 232196543 232196543 C T ARMC9 Silent p.D604D 0.16 TCGA-WS-AB45-01 2 232577602 232577602 G A PTMA 3'UTR 0.16 TCGA-WS-AB45-01 2 232653395 232653395 G A COPS7B Missense_Mutation p.G39R 0.17 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 2 233322819 233322819 G A ALPI Missense_Mutation p.R323H 0.11 deleterious(0.01) benign(0.017) TCGA-WS-AB45-01 2 233347304 233347304 G - ECEL1 Frame_Shift_Del p.P567Hfs*48 0.08 TCGA-WS-AB45-01 2 233527655 233527655 G A EFHD1 Missense_Mutation p.R149Q 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-WS-AB45-01 2 234078752 234078752 G A INPP5D Missense_Mutation p.R566H 0.20 deleterious(0) probably_damaging(0.988) TCGA-WS-AB45-01 2 234113221 234113221 C T INPP5D Missense_Mutation p.P1130L 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-WS-AB45-01 2 234545744 234545744 T C UGT1A10 Silent p.N192N 0.23 TCGA-WS-AB45-01 2 234638523 234638523 C T UGT1A3 Missense_Mutation p.H251Y 0.13 tolerated(0.24) benign(0.007) TCGA-WS-AB45-01 2 234669047 234669047 C T UGT1A8 Intron 0.21 TCGA-WS-AB45-01 2 234676937 234676937 G A UGT1A10 Missense_Mutation p.V383I 0.14 tolerated(0.1) benign(0.135) TCGA-WS-AB45-01 2 234681161 234681161 A - UGT1A4 Frame_Shift_Del p.R524Efs*22 0.09 TCGA-WS-AB45-01 2 235950085 235950085 C T SH3BP4 Silent p.N224N 0.16 TCGA-WS-AB45-01 2 238245160 238245160 G A COL6A3 Silent p.N2861N 0.17 TCGA-WS-AB45-01 2 238287841 238287841 A G COL6A3 Silent p.D645D 0.12 TCGA-WS-AB45-01 2 239037511 239037511 C T ESPNL Missense_Mutation p.A460V 0.25 deleterious(0.03) benign(0.005) TCGA-WS-AB45-01 2 239176789 239176789 G A PER2 Missense_Mutation p.T292M 0.11 deleterious(0.02) possibly_damaging(0.811) TCGA-WS-AB45-01 2 239257474 239257474 T G TRAF3IP1 Missense_Mutation p.L451R 0.15 deleterious(0.03) possibly_damaging(0.665) TCGA-WS-AB45-01 2 239344611 239344611 G A ASB1 Missense_Mutation p.A151T 0.11 deleterious(0.03) benign(0.099) TCGA-WS-AB45-01 2 240085519 240085519 G A HDAC4 Silent p.S197S 0.19 TCGA-WS-AB45-01 2 241459812 241459812 G A ANKMY1 Silent p.H568H 0.11 TCGA-WS-AB45-01 2 241513201 241513201 G A RNPEPL1 Silent p.V46V 0.24 TCGA-WS-AB45-01 2 241535810 241535810 C T CAPN10 Silent p.Y451Y 0.12 TCGA-WS-AB45-01 2 242045928 242045928 A - PASK 3'UTR 0.16 TCGA-WS-AB45-01 2 242079333 242079333 G A PASK Silent p.A189A 0.15 TCGA-WS-AB45-01 2 242129489 242129489 G A ANO7 Missense_Mutation p.R58Q 0.16 deleterious_low_confidence(0.02) benign(0.009) TCGA-WS-AB45-01 2 242285637 242285637 G A SEPT2 Missense_Mutation p.R300H 0.17 deleterious(0) probably_damaging(0.986) TCGA-WS-AB45-01 2 24930275 24930275 C T NCOA1 Missense_Mutation p.R646W 0.17 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 2 25384423 25384423 C T POMC Missense_Mutation p.E111K 0.15 tolerated(0.77) benign(0.085) TCGA-WS-AB45-01 2 25754348 25754348 T C DTNB Missense_Mutation p.H332R 0.14 deleterious(0) benign(0.381) TCGA-WS-AB45-01 2 26532880 26532880 C T GPR113 Missense_Mutation p.A1058T 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-WS-AB45-01 2 26596259 26596259 G A EPT1 Missense_Mutation p.R112H 0.11 deleterious(0) probably_damaging(0.976) TCGA-WS-AB45-01 2 26683758 26683758 G T OTOF Missense_Mutation p.L1892I 0.10 deleterious(0) benign(0.234) TCGA-WS-AB45-01 2 26686853 26686853 G A OTOF Silent p.P1694P 0.19 TCGA-WS-AB45-01 2 26696934 26696934 C T OTOF Silent p.P1111P 0.12 TCGA-WS-AB45-01 2 27466087 27466087 A G CAD Missense_Mutation p.T2168A 0.11 tolerated(0.06) probably_damaging(0.92) TCGA-WS-AB45-01 2 27522276 27522276 C T TRIM54 Missense_Mutation p.R169C 0.18 deleterious(0.01) possibly_damaging(0.886) TCGA-WS-AB45-01 2 27592983 27592983 G A EIF2B4 5'Flank 0.11 TCGA-WS-AB45-01 2 29293598 29293598 C T C2orf71 Missense_Mutation p.R1177Q 0.16 deleterious(0.05) benign(0.1) TCGA-WS-AB45-01 2 29379233 29379233 A - CLIP4 Frame_Shift_Del p.D396Ifs*19 0.13 TCGA-WS-AB45-01 2 30980924 30980924 C T CAPN13 Missense_Mutation p.R285H 0.10 tolerated(0.1) benign(0.444) TCGA-WS-AB45-01 2 31560670 31560670 G A XDH Missense_Mutation p.P1263L 0.16 deleterious(0) possibly_damaging(0.74) TCGA-WS-AB45-01 2 31598364 31598364 T C XDH Missense_Mutation p.H495R 0.13 tolerated(0.22) benign(0.001) TCGA-WS-AB45-01 2 31609390 31609390 C T XDH Missense_Mutation p.R228Q 0.11 tolerated(0.3) benign(0.011) TCGA-WS-AB45-01 2 32503190 32503190 C A YIPF4 5'UTR 0.09 TCGA-WS-AB45-01 2 32641161 32641161 T C BIRC6 Silent p.T934T 0.03 TCGA-WS-AB45-01 2 33482499 33482499 A G LTBP1 Silent p.P772P 0.14 TCGA-WS-AB45-01 2 3469443 3469443 G A TRAPPC12 Missense_Mutation p.G585S 0.11 deleterious(0.04) benign(0.352) TCGA-WS-AB45-01 2 37443497 37443497 C T CEBPZ Missense_Mutation p.R758Q 0.15 deleterious(0) probably_damaging(0.916) TCGA-WS-AB45-01 2 37450314 37450314 G A CEBPZ Missense_Mutation p.P627L 0.09 tolerated(0.3) benign(0.009) TCGA-WS-AB45-01 2 37480414 37480414 G A PRKD3 Missense_Mutation p.A860V 0.12 tolerated(0.14) benign(0.033) TCGA-WS-AB45-01 2 37480453 37480453 C T PRKD3 Missense_Mutation p.R847H 0.09 deleterious(0.01) possibly_damaging(0.775) TCGA-WS-AB45-01 2 38178447 38178447 G A RMDN2 Missense_Mutation p.R30H 0.16 tolerated_low_confidence(1) benign(0) TCGA-WS-AB45-01 2 38302075 38302075 G A CYP1B1 Missense_Mutation p.R153C 0.16 deleterious(0) probably_damaging(0.965) TCGA-WS-AB45-01 2 39519960 39519960 C T MAP4K3 Missense_Mutation p.V409I 0.12 tolerated(0.37) benign(0.397) TCGA-WS-AB45-01 2 39583408 39583408 T C MAP4K3 Missense_Mutation p.Y76C 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 2 39934230 39934230 G T TMEM178A Missense_Mutation p.A186S 0.23 tolerated(0.38) possibly_damaging(0.449) TCGA-WS-AB45-01 2 43453519 43453519 G A ZFP36L2 5'UTR 0.21 TCGA-WS-AB45-01 2 43927393 43927393 T G PLEKHH2 Silent p.P432P 0.06 TCGA-WS-AB45-01 2 44065809 44065809 G T ABCG5 Missense_Mutation p.L4I 0.08 deleterious_low_confidence(0.05) benign(0.219) TCGA-WS-AB45-01 2 44507928 44507928 G A SLC3A1 Silent p.S168S 0.19 TCGA-WS-AB45-01 2 46609688 46609688 C T EPAS1 Silent p.Y804Y 0.12 TCGA-WS-AB45-01 2 47382367 47382367 G A C2orf61 Silent p.T8T 0.17 TCGA-WS-AB45-01 2 47656948 47656960 CGTCGATTCCCAG - MSH2 Frame_Shift_Del p.R382Ifs*26 0.20 TCGA-WS-AB45-01 2 48033419 48033419 T G MSH6 Missense_Mutation p.C1241W 0.14 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 2 48132711 48132711 T G FBXO11 Missense_Mutation p.Q50P 0.30 tolerated_low_confidence(0.21) unknown(0) TCGA-WS-AB45-01 2 48602068 48602068 C A FOXN2 Missense_Mutation p.P261H 0.13 deleterious(0.02) possibly_damaging(0.907) TCGA-WS-AB45-01 2 48734512 48734512 T - PPP1R21 Frame_Shift_Del p.Y693Mfs*21 0.15 TCGA-WS-AB45-01 2 49191106 49191106 C T FSHR Splice_Site p.X285_splice 0.16 TCGA-WS-AB45-01 2 50733672 50733672 T - NRXN1 Frame_Shift_Del p.S860Vfs*2 0.11 TCGA-WS-AB45-01 2 50847287 50847287 G A NRXN1 Missense_Mutation p.T438M 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-WS-AB45-01 2 51254667 51254667 C T NRXN1 Missense_Mutation p.G249S 0.11 tolerated(0.29) possibly_damaging(0.866) TCGA-WS-AB45-01 2 54753569 54753569 T C SPTBN1 Missense_Mutation p.V5A 0.10 tolerated(0.36) benign(0.094) TCGA-WS-AB45-01 2 55920999 55920999 G A PNPT1 5'UTR 0.11 TCGA-WS-AB45-01 2 56108765 56108765 G A EFEMP1 Nonsense_Mutation p.R208* 0.17 TCGA-WS-AB45-01 2 5840561 5840567 AAAAAAG - SOX11 3'UTR 0.47 TCGA-WS-AB45-01 2 5841056 5841056 G - SOX11 3'UTR 0.10 TCGA-WS-AB45-01 2 61009088 61009088 G A PAPOLG Silent p.T325T 0.15 TCGA-WS-AB45-01 2 61389728 61389729 - T C2orf74 Frame_Shift_Ins p.L36Ffs*3 0.21 TCGA-WS-AB45-01 2 61522406 61522406 C T USP34 Nonsense_Mutation p.W1425* 0.19 TCGA-WS-AB45-01 2 64331911 64331911 G T PELI1 Missense_Mutation p.A42D 0.08 tolerated(0.17) possibly_damaging(0.71) TCGA-WS-AB45-01 2 65248406 65248406 C T SLC1A4 3'UTR 0.20 TCGA-WS-AB45-01 2 65298920 65298920 G A CEP68 Silent p.P230P 0.16 TCGA-WS-AB45-01 2 66666975 66666975 A G MEIS1 Silent p.G80G 0.07 TCGA-WS-AB45-01 2 69746282 69746282 T C AAK1 Missense_Mutation p.K434R 0.09 tolerated(0.5) unknown(0) TCGA-WS-AB45-01 2 7018154 7018154 G A RSAD2 Missense_Mutation p.V75I 0.12 tolerated(0.09) possibly_damaging(0.451) TCGA-WS-AB45-01 2 70408558 70408558 T - C2orf42 Frame_Shift_Del p.N187Tfs*5 0.10 TCGA-WS-AB45-01 2 70904934 70904934 G A ADD2 Missense_Mutation p.P487S 0.16 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 2 71160362 71160362 G A VAX2 3'UTR 0.15 TCGA-WS-AB45-01 2 71797750 71797751 - C DYSF Frame_Shift_Ins p.E1039Gfs*11 0.09 TCGA-WS-AB45-01 2 71891404 71891404 C T DYSF Silent p.F1670F 0.18 TCGA-WS-AB45-01 2 73302665 73302665 G A RAB11FIP5 Missense_Mutation p.P649L 0.17 tolerated_low_confidence(0.54) benign(0.006) TCGA-WS-AB45-01 2 73466851 73466851 C T CCT7 Silent p.C29C 0.16 TCGA-WS-AB45-01 2 74071981 74071981 C A STAMBP Missense_Mutation p.S82Y 0.10 deleterious(0.03) benign(0.308) TCGA-WS-AB45-01 2 74273508 74273508 C T TET3 Missense_Mutation p.P20L 0.15 deleterious_low_confidence(0) benign(0.002) TCGA-WS-AB45-01 2 74273733 74273733 G A TET3 Missense_Mutation p.R95H 0.13 deleterious(0.01) possibly_damaging(0.834) TCGA-WS-AB45-01 2 74326565 74326565 G A TET3 Missense_Mutation p.A1009T 0.09 tolerated(0.07) benign(0.067) TCGA-WS-AB45-01 2 74328855 74328855 T C TET3 Missense_Mutation p.L1512P 0.11 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 2 74491321 74491321 G T SLC4A5 Missense_Mutation p.P223H 0.16 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 2 74590271 74590271 G A DCTN1 Missense_Mutation p.P1127S 0.13 deleterious(0.01) possibly_damaging(0.493) TCGA-WS-AB45-01 2 74729977 74729977 T - LBX2 Frame_Shift_Del p.R4Gfs*4 0.10 TCGA-WS-AB45-01 2 75108898 75108898 G A HK2 Missense_Mutation p.R544H 0.16 tolerated(0.34) benign(0.022) TCGA-WS-AB45-01 2 75113653 75113653 G A HK2 Missense_Mutation p.R691H 0.20 tolerated(0.1) benign(0.001) TCGA-WS-AB45-01 2 80136765 80136765 C T CTNNA2 Missense_Mutation p.R300W 0.15 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 2 80530053 80530053 G A LRRTM1 Missense_Mutation p.R298W 0.11 deleterious(0) probably_damaging(0.983) TCGA-WS-AB45-01 2 84517880 84517880 G A FUNDC2P2 RNA 0.14 TCGA-WS-AB45-01 2 84752851 84752851 A - DNAH6 Frame_Shift_Del p.M132Cfs*61 0.11 TCGA-WS-AB45-01 2 85839057 85839057 C - C2orf68 Frame_Shift_Del p.R18Gfs*4 0.17 TCGA-WS-AB45-01 2 86297313 86297313 C T POLR1A Missense_Mutation p.R565H 0.17 tolerated(0.12) benign(0.003) TCGA-WS-AB45-01 2 88409912 88409912 C T SMYD1 Missense_Mutation p.R452C 0.19 deleterious(0) benign(0.418) TCGA-WS-AB45-01 2 88478396 88478396 G A THNSL2 Silent p.S222S 0.09 TCGA-WS-AB45-01 2 88874751 88874751 G A EIF2AK3 Silent p.D750D 0.11 TCGA-WS-AB45-01 2 9463353 9463353 C T ASAP2 Missense_Mutation p.R192C 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-WS-AB45-01 2 9541421 9541421 C T ASAP2 Missense_Mutation p.R948W 0.20 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 2 97302820 97302820 C T KANSL3 Missense_Mutation p.G18D 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-WS-AB45-01 2 97494405 97494405 G A CNNM3 Missense_Mutation p.V630M 0.15 deleterious(0) probably_damaging(0.985) TCGA-WS-AB45-01 2 98430437 98430438 - A TMEM131 Frame_Shift_Ins p.L538Ffs*27 0.08 TCGA-WS-AB45-01 2 98833427 98833427 A G VWA3B Intron 0.17 TCGA-WS-AB45-01 2 99013694 99013694 A - CNGA3 Frame_Shift_Del p.T689Qfs*52 0.11 TCGA-WS-AB45-01 2 99136436 99136436 C A INPP4A 5'UTR 0.11 TCGA-WS-AB45-01 3 100096711 100096711 G A TOMM70A Silent p.Y310Y 0.10 TCGA-WS-AB45-01 3 100621520 100621520 C T ABI3BP Silent p.P97P 0.13 TCGA-WS-AB45-01 3 10081494 10081494 G T FANCD2 Silent p.G220G 0.12 TCGA-WS-AB45-01 3 100963283 100963283 G A IMPG2 Missense_Mutation p.P631L 0.11 deleterious(0.03) benign(0.001) TCGA-WS-AB45-01 3 101574047 101574047 C T NFKBIZ Missense_Mutation p.L529F 0.09 deleterious(0) possibly_damaging(0.896) TCGA-WS-AB45-01 3 101576288 101576288 C T NFKBIZ Silent p.G696G 0.15 TCGA-WS-AB45-01 3 10312211 10312211 C T TATDN2 Missense_Mutation p.R449C 0.16 tolerated(0.12) benign(0.002) TCGA-WS-AB45-01 3 107524292 107524292 C T BBX Silent p.C938C 0.23 TCGA-WS-AB45-01 3 108746715 108746715 T C MORC1 Silent p.L529L 0.14 TCGA-WS-AB45-01 3 112328909 112328909 A T CCDC80 Missense_Mutation p.L781M 0.10 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 3 112738502 112738502 G - C3orf17 5'UTR 0.14 TCGA-WS-AB45-01 3 113850099 113850099 G A DRD3 Missense_Mutation p.A291V 0.23 tolerated(0.26) benign(0.27) TCGA-WS-AB45-01 3 113956079 113956079 C T ZNF80 5'UTR 0.14 TCGA-WS-AB45-01 3 11421512 11421512 G T ATG7 Missense_Mutation p.A648S 0.17 deleterious(0.03) probably_damaging(0.962) TCGA-WS-AB45-01 3 11600890 11600890 G A VGLL4 Missense_Mutation p.R179C 0.11 deleterious(0) probably_damaging(0.979) TCGA-WS-AB45-01 3 11606428 11606428 C T VGLL4 Missense_Mutation p.R113H 0.17 tolerated(0.3) probably_damaging(0.988) TCGA-WS-AB45-01 3 118624548 118624548 C G IGSF11 Missense_Mutation p.V200L 0.10 tolerated(0.67) benign(0.124) TCGA-WS-AB45-01 3 119338488 119338488 C A PLA1A Missense_Mutation p.A334D 0.10 deleterious(0.02) probably_damaging(0.985) TCGA-WS-AB45-01 3 119367329 119367329 G A POPDC2 Missense_Mutation p.R263C 0.11 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 3 119449186 119449186 A C MAATS1 Missense_Mutation p.E327A 0.06 deleterious(0) possibly_damaging(0.511) TCGA-WS-AB45-01 3 121659862 121659862 C A SLC15A2 3'UTR 0.13 TCGA-WS-AB45-01 3 122942508 122942508 T C SEC22A Silent p.I95I 0.22 TCGA-WS-AB45-01 3 123071311 123071311 G A ADCY5 Missense_Mutation p.R418W 0.10 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 3 124385479 124385479 A G KALRN Missense_Mutation p.K268E 0.11 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 3 126153075 126153075 C T CCDC37 Silent p.T493T 0.14 TCGA-WS-AB45-01 3 126260964 126260964 G T CHST13 Missense_Mutation p.R190L 0.09 tolerated(0.23) possibly_damaging(0.84) TCGA-WS-AB45-01 3 126708302 126708302 A G PLXNA1 Missense_Mutation p.D289G 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 3 127391253 127391253 G - PODXL2 Frame_Shift_Del p.A585Rfs*101 0.11 TCGA-WS-AB45-01 3 127395867 127395867 G A ABTB1 Missense_Mutation p.C195Y 0.13 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 3 127703204 127703204 A G KBTBD12 3'UTR 0.18 TCGA-WS-AB45-01 3 127788585 127788585 C T SEC61A1 3'UTR 0.18 TCGA-WS-AB45-01 3 128598460 128598460 G A ACAD9 5'UTR 0.19 TCGA-WS-AB45-01 3 128721019 128721020 - C EFCC1 Frame_Shift_Ins p.R184Pfs*13 0.15 TCGA-WS-AB45-01 3 129034218 129034218 A C H1FX Silent p.A176A 0.16 TCGA-WS-AB45-01 3 129291547 129291547 G A PLXND1 Silent p.A994A 0.15 TCGA-WS-AB45-01 3 129305018 129305018 G A PLXND1 Missense_Mutation p.T573M 0.14 deleterious(0.01) possibly_damaging(0.846) TCGA-WS-AB45-01 3 12962053 12962053 G A IQSEC1 Missense_Mutation p.R647W 0.13 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 3 130137748 130137748 G T COL6A5 Silent p.V1641V 0.12 TCGA-WS-AB45-01 3 132176127 132176127 T C DNAJC13 Missense_Mutation p.L455P 0.12 deleterious(0) probably_damaging(0.947) TCGA-WS-AB45-01 3 132212992 132212992 A G DNAJC13 Missense_Mutation p.K1277R 0.11 tolerated(0.35) benign(0.005) TCGA-WS-AB45-01 3 132277850 132277850 G A ACAD11 Missense_Mutation p.R770W 0.14 deleterious(0.03) benign(0.006) TCGA-WS-AB45-01 3 132418859 132418859 G A NPHP3 Missense_Mutation p.A597V 0.12 tolerated(0.68) benign(0.009) TCGA-WS-AB45-01 3 133098807 133098807 G A TMEM108 Silent p.P84P 0.15 TCGA-WS-AB45-01 3 133558426 133558426 C T RAB6B Missense_Mutation p.D109N 0.13 deleterious(0.05) benign(0.059) TCGA-WS-AB45-01 3 13359201 13359201 G T NUP210 Missense_Mutation p.P1882T 0.15 tolerated(0.41) benign(0.005) TCGA-WS-AB45-01 3 133648617 133648617 C T C3orf36 5'UTR 0.15 TCGA-WS-AB45-01 3 13372109 13372109 G A NUP210 Missense_Mutation p.R1321C 0.15 deleterious(0) possibly_damaging(0.776) TCGA-WS-AB45-01 3 134076550 134076550 G T AMOTL2 Silent p.I780I 0.16 TCGA-WS-AB45-01 3 13612531 13612531 G - FBLN2 Frame_Shift_Del p.G227Afs*47 0.14 TCGA-WS-AB45-01 3 13667976 13667976 G A FBLN2 Silent p.T776T 0.11 TCGA-WS-AB45-01 3 137787175 137787175 C A DZIP1L Missense_Mutation p.E550D 0.17 tolerated(0.23) benign(0.025) TCGA-WS-AB45-01 3 138664427 138664427 T C FOXL2 3'UTR 0.13 TCGA-WS-AB45-01 3 138665096 138665096 G C FOXL2 Missense_Mutation p.P157A 0.15 tolerated(0.14) possibly_damaging(0.539) TCGA-WS-AB45-01 3 139074584 139074584 G A COPB2 3'Flank 0.12 TCGA-WS-AB45-01 3 139258400 139258400 G T RBP1 Missense_Mutation p.A54D 0.18 deleterious_low_confidence(0.01) benign(0.015) TCGA-WS-AB45-01 3 142542416 142542416 G A PCOLCE2 Missense_Mutation p.R303W 0.16 deleterious(0.02) benign(0.077) TCGA-WS-AB45-01 3 142681480 142681480 G A PAQR9 Silent p.T233T 0.13 TCGA-WS-AB45-01 3 143212542 143212542 C T SLC9A9 Missense_Mutation p.R423Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 3 143214268 143214268 A - SLC9A9 Frame_Shift_Del p.L371Wfs*32 0.17 TCGA-WS-AB45-01 3 15057667 15057667 G A NR2C2 Silent p.T113T 0.16 TCGA-WS-AB45-01 3 152555047 152555047 C - P2RY1 3'UTR 0.09 TCGA-WS-AB45-01 3 15288286 15288286 C T CAPN7 Silent p.Y686Y 0.17 TCGA-WS-AB45-01 3 154145335 154145335 C T GPR149 Missense_Mutation p.A382T 0.11 tolerated(0.65) benign(0.004) TCGA-WS-AB45-01 3 15477961 15477961 C T EAF1 Silent p.G213G 0.19 TCGA-WS-AB45-01 3 154834710 154834710 A G MME Missense_Mutation p.K197E 0.16 tolerated(0.27) possibly_damaging(0.69) TCGA-WS-AB45-01 3 15497405 15497405 C T COLQ Splice_Site p.X399_splice 0.10 TCGA-WS-AB45-01 3 155218567 155218567 C T PLCH1 Missense_Mutation p.R562Q 0.16 tolerated(0.11) benign(0.035) TCGA-WS-AB45-01 3 15677070 15677070 G A BTD Missense_Mutation p.V62M 0.12 deleterious(0) probably_damaging(0.956) TCGA-WS-AB45-01 3 157823650 157823650 G A SHOX2 Missense_Mutation p.A55V 0.13 tolerated_low_confidence(0.33) benign(0.023) TCGA-WS-AB45-01 3 157823880 157823880 T - SHOX2 5'UTR 0.11 TCGA-WS-AB45-01 3 164735460 164735460 A G SI Missense_Mutation p.V1212A 0.09 tolerated(0.23) possibly_damaging(0.814) TCGA-WS-AB45-01 3 164757745 164757745 G A SI Missense_Mutation p.T725M 0.13 deleterious(0.05) benign(0.028) TCGA-WS-AB45-01 3 168862833 168862833 C T MECOM 5'UTR 0.17 TCGA-WS-AB45-01 3 169540063 169540063 C T LRRIQ4 Silent p.H118H 0.20 TCGA-WS-AB45-01 3 170784515 170784515 T C TNIK Missense_Mutation p.N1237D 0.16 tolerated(0.16) possibly_damaging(0.81) TCGA-WS-AB45-01 3 170843896 170843896 G A TNIK Silent p.T606T 0.25 TCGA-WS-AB45-01 3 170857329 170857329 T G TNIK Missense_Mutation p.Q450P 0.20 deleterious(0.02) unknown(0) TCGA-WS-AB45-01 3 171969286 171969286 C T FNDC3B Nonsense_Mutation p.R249* 0.11 TCGA-WS-AB45-01 3 178560711 178560711 C T KCNMB2 Missense_Mutation p.R232W 0.15 deleterious(0) probably_damaging(0.913) TCGA-WS-AB45-01 3 179107814 179107814 C T MFN1 Missense_Mutation p.R679C 0.15 deleterious(0) possibly_damaging(0.458) TCGA-WS-AB45-01 3 179304377 179304377 G A ACTL6A Missense_Mutation p.R389Q 0.12 deleterious(0) probably_damaging(0.935) TCGA-WS-AB45-01 3 180320754 180320754 C A TTC14 Silent p.S79S 0.17 TCGA-WS-AB45-01 3 180321042 180321042 C T TTC14 Silent p.F139F 0.13 TCGA-WS-AB45-01 3 182872079 182872079 T - LAMP3 Frame_Shift_Del p.K50Nfs*15 0.15 TCGA-WS-AB45-01 3 183521918 183521918 C T YEATS2 Silent p.S1242S 0.13 TCGA-WS-AB45-01 3 183705506 183705506 C T ABCC5 Intron 0.16 TCGA-WS-AB45-01 3 183888153 183888153 G T DVL3 Missense_Mutation p.K587N 0.16 tolerated(0.27) possibly_damaging(0.728) TCGA-WS-AB45-01 3 183952490 183952490 G A VWA5B2 Missense_Mutation p.A298T 0.23 deleterious(0.01) possibly_damaging(0.647) TCGA-WS-AB45-01 3 184045153 184045153 G A EIF4G1 Missense_Mutation p.R1200Q 0.15 tolerated(0.17) possibly_damaging(0.536) TCGA-WS-AB45-01 3 184071066 184071066 G - CLCN2 Frame_Shift_Del p.P667Lfs*11 0.15 TCGA-WS-AB45-01 3 184294873 184294873 C T EPHB3 Missense_Mutation p.T419M 0.09 tolerated(0.1) possibly_damaging(0.634) TCGA-WS-AB45-01 3 184689535 184689535 C T VPS8 Missense_Mutation p.R1139C 0.11 deleterious(0) probably_damaging(0.987) TCGA-WS-AB45-01 3 184910273 184910273 C T EHHADH Missense_Mutation p.G638E 0.15 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 3 186006613 186006613 G - DGKG Frame_Shift_Del p.L144Wfs*18 0.18 TCGA-WS-AB45-01 3 189526225 189526225 C T TP63 Silent p.P163P 0.13 TCGA-WS-AB45-01 3 192126123 192126123 G A FGF12 5'UTR 0.21 TCGA-WS-AB45-01 3 19295378 19295378 C T KCNH8 Silent p.N103N 0.12 TCGA-WS-AB45-01 3 194408363 194408363 G A FAM43A Missense_Mutation p.E270K 0.15 deleterious(0.01) probably_damaging(0.953) TCGA-WS-AB45-01 3 19498314 19498314 C T KCNH8 Missense_Mutation p.T627I 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 3 195452644 195452644 C T MUC20 Silent p.D390D 0.10 TCGA-WS-AB45-01 3 195925287 195925287 A - ZDHHC19 Frame_Shift_Del p.V270Gfs*83 0.16 TCGA-WS-AB45-01 3 195974340 195974340 G A PCYT1A Silent p.N128N 0.11 TCGA-WS-AB45-01 3 196120466 196120466 C T UBXN7 Missense_Mutation p.R105H 0.14 tolerated(0.2) benign(0.14) TCGA-WS-AB45-01 3 196288207 196288207 C T WDR53 Missense_Mutation p.R47Q 0.13 tolerated(0.95) benign(0.003) TCGA-WS-AB45-01 3 197597113 197597115 AGA - LRCH3 In_Frame_Del p.E655del 0.19 TCGA-WS-AB45-01 3 20202562 20202562 A - SGOL1 3'UTR 0.15 TCGA-WS-AB45-01 3 25760886 25760886 C A NGLY1 3'UTR 0.12 TCGA-WS-AB45-01 3 27215947 27215947 A G NEK10 Missense_Mutation p.L920P 0.20 tolerated(0.12) possibly_damaging(0.834) TCGA-WS-AB45-01 3 28562603 28562603 A - ZCWPW2 Frame_Shift_Del p.K303Sfs*25 0.14 TCGA-WS-AB45-01 3 30713659 30713659 C T TGFBR2 Silent p.H353H 0.20 TCGA-WS-AB45-01 3 31710204 31710204 C T OSBPL10 Missense_Mutation p.D676N 0.18 tolerated(0.13) possibly_damaging(0.779) TCGA-WS-AB45-01 3 3189688 3189688 A G TRNT1 Silent p.P385P 0.14 TCGA-WS-AB45-01 3 32933145 32933145 C T TRIM71 Missense_Mutation p.R817W 0.17 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 3 33134797 33134797 G T TMPPE Silent p.V297V 0.05 TCGA-WS-AB45-01 3 36779856 36779857 - C DCLK3 Frame_Shift_Ins p.K99Efs*8 0.09 TCGA-WS-AB45-01 3 38420794 38420794 G A XYLB Missense_Mutation p.A418T 0.26 tolerated(0.06) possibly_damaging(0.772) TCGA-WS-AB45-01 3 39149261 39149261 C T GORASP1 5'UTR 0.15 TCGA-WS-AB45-01 3 39453192 39453192 G A RPSA Missense_Mutation p.R184H 0.29 tolerated(0.32) benign(0.025) TCGA-WS-AB45-01 3 40529255 40529255 T C ZNF619 Silent p.H458H 0.09 TCGA-WS-AB45-01 3 41757060 41757060 C T ULK4 Missense_Mutation p.G819D 0.19 tolerated(0.27) benign(0.021) TCGA-WS-AB45-01 3 42679199 42679199 A - NKTR Frame_Shift_Del p.N670Ifs*43 0.12 TCGA-WS-AB45-01 3 42916908 42916908 T C CYP8B1 Missense_Mutation p.D134G 0.12 tolerated(0.06) benign(0.01) TCGA-WS-AB45-01 3 43121892 43121892 C T POMGNT2 Missense_Mutation p.M344I 0.15 deleterious(0.05) benign(0.159) TCGA-WS-AB45-01 3 43122096 43122096 G A POMGNT2 Silent p.N276N 0.21 TCGA-WS-AB45-01 3 4403907 4403907 C T SUMF1 Missense_Mutation p.R349Q 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 3 44700505 44700505 T A ZNF35 Missense_Mutation p.L217H 0.10 deleterious(0.04) possibly_damaging(0.518) TCGA-WS-AB45-01 3 45804479 45804479 G A SLC6A20 Silent p.Y463Y 0.10 TCGA-WS-AB45-01 3 46307343 46307343 A - CCR3 Frame_Shift_Del p.K255Sfs*52 0.32 TCGA-WS-AB45-01 3 47040477 47040477 C T NBEAL2 Missense_Mutation p.A1138V 0.09 deleterious(0.03) benign(0.044) TCGA-WS-AB45-01 3 47041492 47041492 C - NBEAL2 Frame_Shift_Del p.P1303Lfs*63 0.12 TCGA-WS-AB45-01 3 47045468 47045468 T C NBEAL2 Splice_Site p.X1961_splice 0.14 TCGA-WS-AB45-01 3 47161907 47161907 T - SETD2 Frame_Shift_Del p.R1407Gfs*5 0.15 TCGA-WS-AB45-01 3 47316912 47316912 C T KIF9 Silent p.S54S 0.09 TCGA-WS-AB45-01 3 47614363 47614363 A G CSPG5 Missense_Mutation p.C399R 0.11 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 3 47887317 47887317 G A DHX30 Missense_Mutation p.R356H 0.12 tolerated(0.1) benign(0.006) TCGA-WS-AB45-01 3 47888187 47888187 G A DHX30 Missense_Mutation p.R542H 0.25 deleterious(0) possibly_damaging(0.722) TCGA-WS-AB45-01 3 48451880 48451880 G A PLXNB1 Missense_Mutation p.T1835I 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 3 48465101 48465101 C T PLXNB1 Missense_Mutation p.R307Q 0.15 tolerated(0.48) benign(0.016) TCGA-WS-AB45-01 3 48520646 48520646 G A SHISA5 Missense_Mutation p.P85L 0.24 tolerated(0.27) benign(0.084) TCGA-WS-AB45-01 3 48613069 48613069 G - COL7A1 Frame_Shift_Del p.P1990Qfs*15 0.09 TCGA-WS-AB45-01 3 48631051 48631052 - C COL7A1 Frame_Shift_Ins p.N116Qfs*13 0.13 TCGA-WS-AB45-01 3 48728869 48728869 A G IP6K2 Silent p.L159L 0.14 TCGA-WS-AB45-01 3 49011171 49011171 T C ARIH2 Silent p.C270C 0.16 TCGA-WS-AB45-01 3 49017929 49017929 G A ARIH2 Silent p.K419K 0.13 TCGA-WS-AB45-01 3 49064405 49064405 G A IMPDH2 Missense_Mutation p.R203C 0.13 deleterious(0.04) possibly_damaging(0.806) TCGA-WS-AB45-01 3 49155424 49155424 G A USP19 Missense_Mutation p.S85L 0.07 tolerated_low_confidence(0.38) benign(0) TCGA-WS-AB45-01 3 49159690 49159690 C T LAMB2 Missense_Mutation p.V1563I 0.16 tolerated(0.27) probably_damaging(0.997) TCGA-WS-AB45-01 3 49395773 49395773 A G GPX1 5'UTR 0.21 TCGA-WS-AB45-01 3 49693080 49693080 C T BSN Missense_Mutation p.R2031C 0.14 unknown(0) TCGA-WS-AB45-01 3 49699035 49699035 C T BSN Missense_Mutation p.R3253W 0.11 unknown(0) TCGA-WS-AB45-01 3 49749968 49749968 C T RNF123 Silent p.H851H 0.20 TCGA-WS-AB45-01 3 49755899 49755899 C T AMIGO3 Missense_Mutation p.D334N 0.21 tolerated(1) benign(0.004) TCGA-WS-AB45-01 3 49881329 49881329 C T TRAIP Missense_Mutation p.D105N 0.17 tolerated(0.06) benign(0.394) TCGA-WS-AB45-01 3 49936624 49936624 G A MST1R Missense_Mutation p.R435C 0.13 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 3 49946392 49946392 C T MON1A 3'UTR 0.14 TCGA-WS-AB45-01 3 50225334 50225334 C T SEMA3F Missense_Mutation p.P715L 0.16 tolerated(0.2) benign(0.001) TCGA-WS-AB45-01 3 50225348 50225348 G A SEMA3F Missense_Mutation p.A720T 0.15 tolerated(0.49) benign(0.001) TCGA-WS-AB45-01 3 50380440 50380441 GA - ZMYND10 Frame_Shift_Del p.L203Qfs*8 0.11 TCGA-WS-AB45-01 3 50385589 50385589 G A NPRL2 Missense_Mutation p.R300C 0.15 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 3 52021616 52021616 G T ACY1 Missense_Mutation p.E299D 0.07 tolerated(0.58) benign(0.03) TCGA-WS-AB45-01 3 52257478 52257478 C T TLR9 Missense_Mutation p.R439H 0.12 tolerated(0.9) benign(0.002) TCGA-WS-AB45-01 3 52257981 52257981 G A TLR9 Silent p.S271S 0.13 TCGA-WS-AB45-01 3 52263130 52263130 C T TWF2 Missense_Mutation p.A324T 0.22 deleterious(0.01) possibly_damaging(0.522) TCGA-WS-AB45-01 3 52283003 52283003 G A PPM1M Missense_Mutation p.R125Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 3 52488026 52488026 A G TNNC1 Silent p.D2D 0.16 TCGA-WS-AB45-01 3 52548441 52548441 C T STAB1 Missense_Mutation p.R1203W 0.16 deleterious(0.04) benign(0.087) TCGA-WS-AB45-01 3 52553372 52553373 - C STAB1 Frame_Shift_Ins p.E1712Rfs*8 0.12 TCGA-WS-AB45-01 3 52588787 52588788 - G PBRM1 Frame_Shift_Ins p.H1414Pfs*95 0.09 TCGA-WS-AB45-01 3 52663001 52663001 T C PBRM1 Missense_Mutation p.D451G 0.13 deleterious(0) probably_damaging(0.984) TCGA-WS-AB45-01 3 52853420 52853420 C T ITIH4 Missense_Mutation p.R689H 0.10 tolerated(0.16) benign(0.002) TCGA-WS-AB45-01 3 53905320 53905320 C T ACTR8 Silent p.S502S 0.09 TCGA-WS-AB45-01 3 53919889 53919889 C T SELK Missense_Mutation p.G82D 0.15 deleterious(0.01) possibly_damaging(0.889) TCGA-WS-AB45-01 3 56591250 56591251 GA - CCDC66 5'UTR 0.24 TCGA-WS-AB45-01 3 56707646 56707646 G A FAM208A Missense_Mutation p.R147C 0.14 tolerated(0.09) benign(0.021) TCGA-WS-AB45-01 3 57415427 57415427 G T DNAH12 Silent p.S1662S 0.14 TCGA-WS-AB45-01 3 57632088 57632088 G A DENND6A Missense_Mutation p.A299V 0.12 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 3 62204553 62204553 C T PTPRG Silent p.S728S 0.10 TCGA-WS-AB45-01 3 69097687 69097687 A G TMF1 Missense_Mutation p.W57R 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WS-AB45-01 3 69230482 69230482 C T FRMD4B Missense_Mutation p.A807T 0.10 tolerated(1) benign(0) TCGA-WS-AB45-01 3 69231821 69231821 C T FRMD4B Missense_Mutation p.R656Q 0.14 tolerated(0.81) benign(0.002) TCGA-WS-AB45-01 3 70014297 70014297 C T MITF Silent p.V487V 0.11 TCGA-WS-AB45-01 3 73433755 73433755 G A PDZRN3 Silent p.C654C 0.15 TCGA-WS-AB45-01 3 73433801 73433801 G A PDZRN3 Missense_Mutation p.P639L 0.14 deleterious(0.01) possibly_damaging(0.493) TCGA-WS-AB45-01 3 74414804 74414804 C A CNTN3 Missense_Mutation p.E332D 0.07 tolerated(0.75) benign(0.214) TCGA-WS-AB45-01 3 78710235 78710235 A - ROBO1 Frame_Shift_Del p.F755Lfs*28 0.10 TCGA-WS-AB45-01 3 87018074 87018075 - G VGLL3 Frame_Shift_Ins p.A202Cfs*4 0.09 TCGA-WS-AB45-01 3 8787533 8787533 G C CAV3 Missense_Mutation p.V146L 0.21 tolerated(0.07) benign(0.002) TCGA-WS-AB45-01 3 9146506 9146506 G A SRGAP3 Missense_Mutation p.S94L 0.10 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 3 93755559 93755562 AAGA - ARL13B Frame_Shift_Del p.R219Lfs*41 0.11 TCGA-WS-AB45-01 3 9771332 9771332 C - CPNE9 Frame_Shift_Del p.P541Lfs*56 0.17 TCGA-WS-AB45-01 3 9788110 9788110 G A BRPF1 Missense_Mutation p.V1151I 0.09 deleterious(0.05) possibly_damaging(0.609) TCGA-WS-AB45-01 3 9793484 9793484 A G OGG1 Missense_Mutation p.E139G 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 3 98002310 98002310 C A OR5H2 Silent p.S193S 0.10 TCGA-WS-AB45-01 3 9802380 9802380 G A CAMK1 Silent p.Y235Y 0.14 TCGA-WS-AB45-01 3 98072712 98072712 T C OR5K4 Silent p.N5N 0.25 TCGA-WS-AB45-01 3 98216889 98216889 G A OR5K2 Missense_Mutation p.R122H 0.11 deleterious(0.01) benign(0.236) TCGA-WS-AB45-01 3 98530317 98530317 G A DCBLD2 Missense_Mutation p.A482V 0.10 tolerated(0.17) benign(0.011) TCGA-WS-AB45-01 4 100479350 100479350 T - TRMT10A Frame_Shift_Del p.K68Nfs*7 0.10 TCGA-WS-AB45-01 4 1017664 1017664 G T FGFRL1 Missense_Mutation p.G165C 0.13 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 4 103831691 103831691 C T SLC9B1 Missense_Mutation p.V331I 0.04 tolerated(0.13) benign(0.416) TCGA-WS-AB45-01 4 104640636 104640636 G A TACR3 Missense_Mutation p.A66V 0.18 tolerated(0.07) benign(0.057) TCGA-WS-AB45-01 4 106157119 106157119 C T TET2 Nonsense_Mutation p.Q674* 0.10 TCGA-WS-AB45-01 4 106196366 106196366 A G TET2 Missense_Mutation p.N1567D 0.09 tolerated(0.08) benign(0.012) TCGA-WS-AB45-01 4 107163715 107163715 T C TBCK Missense_Mutation p.E361G 0.12 tolerated(0.42) benign(0.017) TCGA-WS-AB45-01 4 107249322 107249322 G A AIMP1 Missense_Mutation p.V129I 0.10 tolerated(0.27) benign(0.001) TCGA-WS-AB45-01 4 107845795 107845795 G A DKK2 Missense_Mutation p.R146W 0.13 deleterious(0.01) possibly_damaging(0.876) TCGA-WS-AB45-01 4 109546367 109546367 A - RPL34 Frame_Shift_Del 0.10 TCGA-WS-AB45-01 4 113066684 113066684 G A C4orf32 5'UTR 0.14 TCGA-WS-AB45-01 4 113153065 113153065 G A AP1AR 5'UTR 0.19 TCGA-WS-AB45-01 4 113524788 113524788 G A C4orf21 Silent p.H956H 0.10 TCGA-WS-AB45-01 4 119953005 119953005 C G SYNPO2 Nonsense_Mutation p.Y1025* 0.12 TCGA-WS-AB45-01 4 122063045 122063045 C T TNIP3 Missense_Mutation p.G348S 0.13 tolerated(0.05) benign(0.066) TCGA-WS-AB45-01 4 122831359 122831360 CT - TRPC3 Frame_Shift_Del p.S581* 0.18 TCGA-WS-AB45-01 4 122853729 122853729 C T TRPC3 Silent p.T228T 0.12 TCGA-WS-AB45-01 4 123145669 123145669 A T KIAA1109 Missense_Mutation p.D877V 0.16 probably_damaging(0.979) TCGA-WS-AB45-01 4 123249413 123249413 G A KIAA1109 Missense_Mutation p.R3717Q 0.07 probably_damaging(0.99) TCGA-WS-AB45-01 4 126238465 126238465 C A FAT4 Missense_Mutation p.P300H 0.15 probably_damaging(1) TCGA-WS-AB45-01 4 126238553 126238553 C T FAT4 Silent p.G329G 0.09 TCGA-WS-AB45-01 4 126373465 126373465 C T FAT4 Missense_Mutation p.A3765V 0.07 probably_damaging(0.997) TCGA-WS-AB45-01 4 130030869 130030869 T - C4orf33 Intron 0.11 TCGA-WS-AB45-01 4 13601800 13601800 G A BOD1L1 Nonsense_Mutation p.R2242* 0.13 TCGA-WS-AB45-01 4 13629043 13629043 T C BOD1L1 Missense_Mutation p.I57V 0.19 benign(0.334) TCGA-WS-AB45-01 4 138452159 138452159 C A PCDH18 Nonsense_Mutation p.G362* 0.10 TCGA-WS-AB45-01 4 144797984 144797984 G A GYPE Missense_Mutation p.A54V 0.12 tolerated_low_confidence(0.18) possibly_damaging(0.695) TCGA-WS-AB45-01 4 145655922 145655922 C T HHIP Missense_Mutation p.T597M 0.19 tolerated(0.1) benign(0.185) TCGA-WS-AB45-01 4 151793833 151793833 A - LRBA Frame_Shift_Del p.L747* 0.12 TCGA-WS-AB45-01 4 152065198 152065198 C A SH3D19 Missense_Mutation p.G439V 0.16 deleterious(0) probably_damaging(0.978) TCGA-WS-AB45-01 4 152096591 152096591 G A SH3D19 5'UTR 0.28 TCGA-WS-AB45-01 4 152571488 152571488 C T FAM160A1 Silent p.G765G 0.10 TCGA-WS-AB45-01 4 153247289 153247289 G A FBXW7 Missense_Mutation p.R505C 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 4 154523820 154523820 C T KIAA0922 Silent p.D860D 0.10 TCGA-WS-AB45-01 4 155180843 155180843 C T DCHS2 Missense_Mutation p.V1760I 0.12 tolerated(0.24) benign(0.144) TCGA-WS-AB45-01 4 155219646 155219646 G T DCHS2 Silent p.S1485S 0.13 TCGA-WS-AB45-01 4 155244278 155244278 A G DCHS2 Intron 0.23 TCGA-WS-AB45-01 4 155411559 155411559 G A DCHS2 Missense_Mutation p.R317C 0.15 deleterious(0) probably_damaging(0.959) TCGA-WS-AB45-01 4 156136716 156136716 T - NPY2R 3'UTR 0.13 TCGA-WS-AB45-01 4 156268843 156268843 A T MAP9 3'UTR 0.15 TCGA-WS-AB45-01 4 15724558 15724558 G A BST1 Splice_Site p.X284_splice 0.13 TCGA-WS-AB45-01 4 159747141 159747141 C T FNIP2 Nonsense_Mutation p.Q61* 0.10 TCGA-WS-AB45-01 4 159780295 159780295 T C FNIP2 Missense_Mutation p.I315T 0.16 deleterious(0) possibly_damaging(0.844) TCGA-WS-AB45-01 4 16504612 16504612 C T LDB2 Intron 0.15 TCGA-WS-AB45-01 4 1657165 1657165 C T FAM53A Missense_Mutation p.S141N 0.15 tolerated(0.19) benign(0.199) TCGA-WS-AB45-01 4 1670473 1670473 G A FAM53A 5'UTR 0.12 TCGA-WS-AB45-01 4 169317271 169317288 TAGTGCTACTATTTAAAA AGTGCTACTATTT DDX60L Splice_Site p.X1164_splice 0.11 TCGA-WS-AB45-01 4 170398356 170398356 G A NEK1 Missense_Mutation p.R785C 0.16 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 4 1736998 1736998 A G TACC3 Splice_Site p.X531_splice 0.15 TCGA-WS-AB45-01 4 174450374 174450374 C T HAND2 Missense_Mutation p.A23T 0.20 tolerated(0.27) benign(0.015) TCGA-WS-AB45-01 4 17710996 17710996 G A FAM184B Missense_Mutation p.A138V 0.10 tolerated(0.31) possibly_damaging(0.526) TCGA-WS-AB45-01 4 1805491 1805491 G A FGFR3 Intron 0.17 TCGA-WS-AB45-01 4 1808390 1808390 C T FGFR3 Silent p.P718P 0.15 TCGA-WS-AB45-01 4 183713830 183713830 G T TENM3 Missense_Mutation p.R2002M 0.24 deleterious(0) possibly_damaging(0.831) TCGA-WS-AB45-01 4 184182396 184182396 G A WWC2 Silent p.P540P 0.20 TCGA-WS-AB45-01 4 186241919 186241919 G A SNX25 Silent p.T295T 0.17 TCGA-WS-AB45-01 4 186366479 186366479 C A CCDC110 3'UTR 0.17 TCGA-WS-AB45-01 4 186544674 186544674 C T SORBS2 Missense_Mutation p.E733K 0.10 deleterious(0) possibly_damaging(0.729) TCGA-WS-AB45-01 4 186560075 186560075 C T SORBS2 Intron 0.17 TCGA-WS-AB45-01 4 187518176 187518176 G A FAT1 Missense_Mutation p.T4173M 0.15 probably_damaging(0.953) TCGA-WS-AB45-01 4 187534433 187534433 C A FAT1 Missense_Mutation p.R3098M 0.12 possibly_damaging(0.759) TCGA-WS-AB45-01 4 188924420 188924420 G A ZFP42 Silent p.P153P 0.13 TCGA-WS-AB45-01 4 188924770 188924770 C T ZFP42 Missense_Mutation p.T270M 0.18 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 4 20599966 20599966 C T SLIT2 Missense_Mutation p.R1214C 0.09 deleterious(0) possibly_damaging(0.851) TCGA-WS-AB45-01 4 20618731 20618731 G T SLIT2 Missense_Mutation p.S1349I 0.19 tolerated(0.19) benign(0.046) TCGA-WS-AB45-01 4 2341221 2341221 C T ZFYVE28 Silent p.A160A 0.19 TCGA-WS-AB45-01 4 23814419 23814419 C T PPARGC1A Missense_Mutation p.R657Q 0.13 tolerated(0.05) unknown(0) TCGA-WS-AB45-01 4 2695436 2695436 C T FAM193A Missense_Mutation p.A685V 0.09 tolerated(0.24) benign(0.113) TCGA-WS-AB45-01 4 27009289 27009289 C T STIM2 Silent p.N372N 0.11 TCGA-WS-AB45-01 4 2834133 2834133 G A SH3BP2 Silent p.S551S 0.08 TCGA-WS-AB45-01 4 3133117 3133117 A - HTT Frame_Shift_Del p.N699Mfs*9 0.17 TCGA-WS-AB45-01 4 3769779 3769779 C T ADRA2C 3'UTR 0.17 TCGA-WS-AB45-01 4 38830657 38830657 T C TLR6 Silent p.S146S 0.08 TCGA-WS-AB45-01 4 38945080 38945080 T G FAM114A1 Missense_Mutation p.C532G 0.24 tolerated(0.13) benign(0.005) TCGA-WS-AB45-01 4 39034035 39034035 A G TMEM156 5'UTR 0.16 TCGA-WS-AB45-01 4 39439579 39439579 T C KLB Silent p.C523C 0.10 TCGA-WS-AB45-01 4 3951238 3951238 G A FAM86EP Intron 0.17 TCGA-WS-AB45-01 4 39779392 39779392 A - UBE2K Frame_Shift_Del p.I166* 0.14 TCGA-WS-AB45-01 4 39780083 39780083 C A UBE2K 3'UTR 0.11 TCGA-WS-AB45-01 4 40440498 40440498 G A RBM47 Missense_Mutation p.P138L 0.21 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 4 42895430 42895430 C A GRXCR1 Silent p.I49I 0.12 TCGA-WS-AB45-01 4 46067417 46067417 C T GABRG1 Missense_Mutation p.R169Q 0.12 deleterious(0) benign(0.252) TCGA-WS-AB45-01 4 47939789 47939789 T C CNGA1 Missense_Mutation p.K310R 0.08 tolerated(0.35) benign(0.34) TCGA-WS-AB45-01 4 48136202 48136202 C T TXK 5'UTR 0.12 TCGA-WS-AB45-01 4 48490938 48490938 C T SLC10A4 Silent p.T432T 0.11 TCGA-WS-AB45-01 4 48514547 48514547 T C FRYL Missense_Mutation p.D2699G 0.15 tolerated(0.11) probably_damaging(0.996) TCGA-WS-AB45-01 4 48533286 48533287 - G FRYL Frame_Shift_Ins p.K2264Qfs*11 0.11 TCGA-WS-AB45-01 4 4864532 4864532 C T MSX1 Missense_Mutation p.R192C 0.10 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 4 49046847 49046847 G A CWH43 Missense_Mutation p.M616I 0.14 deleterious(0.02) probably_damaging(0.915) TCGA-WS-AB45-01 4 5624286 5624286 G A EVC2 Missense_Mutation p.R827C 0.14 tolerated(0.11) benign(0.004) TCGA-WS-AB45-01 4 56342185 56342185 T C CLOCK Missense_Mutation p.Q98R 0.13 deleterious(0.01) possibly_damaging(0.672) TCGA-WS-AB45-01 4 56826056 56826056 G A CEP135 Intron 0.11 TCGA-WS-AB45-01 4 57797947 57797947 C - REST Frame_Shift_Del p.P976Lfs*4 0.11 TCGA-WS-AB45-01 4 57842992 57842992 G A NOA1 Missense_Mutation p.P254S 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 4 57871414 57871415 - A POLR2B Frame_Shift_Ins p.P303Tfs*5 0.12 TCGA-WS-AB45-01 4 57871862 57871862 G A POLR2B Silent p.P398P 0.08 TCGA-WS-AB45-01 4 5823521 5823521 G - CRMP1 Frame_Shift_Del p.P676Lfs*21 0.16 TCGA-WS-AB45-01 4 5961174 5961174 A - C4orf50 Frame_Shift_Del p.H728Tfs*21 0.10 TCGA-WS-AB45-01 4 6578343 6578343 A G MAN2B2 Silent p.S59S 0.18 TCGA-WS-AB45-01 4 6610855 6610855 C T MAN2B2 Silent p.R612R 0.13 TCGA-WS-AB45-01 4 6619161 6619161 A G MAN2B2 Missense_Mutation p.H919R 0.14 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 4 682815 682815 G A MFSD7 Silent p.L34L 0.12 TCGA-WS-AB45-01 4 69083724 69083724 C T TMPRSS11BNL 5'UTR 0.17 TCGA-WS-AB45-01 4 69111339 69111339 G A TMPRSS11B 5'UTR 0.17 TCGA-WS-AB45-01 4 71201281 71201281 C T CABS1 Silent p.D175D 0.16 TCGA-WS-AB45-01 4 71347243 71347243 C T MUC7 Missense_Mutation p.P261L 0.20 deleterious(0.01) unknown(0) TCGA-WS-AB45-01 4 7436364 7436364 G A PSAPL1 Silent p.D81D 0.18 TCGA-WS-AB45-01 4 74447912 74447912 T - RASSF6 Frame_Shift_Del p.K253Nfs*25 0.12 TCGA-WS-AB45-01 4 7719779 7719779 G T SORCS2 Missense_Mutation p.D765Y 0.11 tolerated(0.06) probably_damaging(0.944) TCGA-WS-AB45-01 4 77631386 77631386 C A SHROOM3 Missense_Mutation p.P134H 0.15 tolerated(0.1) possibly_damaging(0.819) TCGA-WS-AB45-01 4 77675942 77675942 G A SHROOM3 Missense_Mutation p.A1436T 0.15 tolerated(0.75) benign(0) TCGA-WS-AB45-01 4 77677603 77677603 T G SHROOM3 Missense_Mutation p.F1571V 0.13 tolerated(0.51) benign(0.013) TCGA-WS-AB45-01 4 79780759 79780759 C T BMP2K Missense_Mutation p.P302L 0.16 tolerated(0.13) possibly_damaging(0.588) TCGA-WS-AB45-01 4 79833207 79833207 G A BMP2K 3'UTR 0.06 TCGA-WS-AB45-01 4 8229750 8229750 A T SH3TC1 Missense_Mutation p.T777S 0.20 tolerated(0.77) benign(0.01) TCGA-WS-AB45-01 4 82369330 82369330 C T RASGEF1B Missense_Mutation p.D183N 0.12 tolerated(0.06) benign(0.013) TCGA-WS-AB45-01 4 83970349 83970349 C T COPS4 Missense_Mutation p.S62L 0.09 deleterious(0) probably_damaging(0.935) TCGA-WS-AB45-01 4 8416650 8416650 A - ACOX3 Frame_Shift_Del p.F128Lfs*31 0.08 TCGA-WS-AB45-01 4 84185434 84185434 A - COQ2 Frame_Shift_Del p.L395* 0.12 TCGA-WS-AB45-01 4 84216533 84216533 A - HPSE Frame_Shift_Del p.F532Lfs*2 0.14 TCGA-WS-AB45-01 4 84350849 84350849 A - HELQ Frame_Shift_Del p.F782Lfs*9 0.10 TCGA-WS-AB45-01 4 843975 843975 G A GAK Intron 0.16 TCGA-WS-AB45-01 4 84502960 84502960 C T AGPAT9 Missense_Mutation p.R152C 0.14 deleterious(0) benign(0.363) TCGA-WS-AB45-01 4 860974 860975 - C GAK Frame_Shift_Ins p.V881Gfs*39 0.16 TCGA-WS-AB45-01 4 8613781 8613781 G A CPZ Missense_Mutation p.A419T 0.20 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 4 86652 86652 G A Z95704.2 RNA 0.14 TCGA-WS-AB45-01 4 87696702 87696702 G A PTPN13 Missense_Mutation p.V1935I 0.07 tolerated(1) benign(0.003) TCGA-WS-AB45-01 4 87728952 87728952 A - PTPN13 Frame_Shift_Del p.T2335Qfs*13 0.09 TCGA-WS-AB45-01 4 88036350 88036350 C T AFF1 Missense_Mutation p.R789C 0.11 tolerated(0.09) unknown(0) TCGA-WS-AB45-01 4 88084742 88084742 C T KLHL8 Missense_Mutation p.V598M 0.15 deleterious(0.02) possibly_damaging(0.674) TCGA-WS-AB45-01 4 88732828 88732828 A T IBSP Silent p.P240P 0.13 TCGA-WS-AB45-01 4 88903787 88903787 T C SPP1 Silent p.S228S 0.14 TCGA-WS-AB45-01 4 89349835 89349835 G A HERC6 Missense_Mutation p.R680H 0.14 tolerated(1) benign(0) TCGA-WS-AB45-01 4 90170442 90170442 G A GPRIN3 Missense_Mutation p.P274S 0.14 tolerated(0.55) benign(0) TCGA-WS-AB45-01 4 90647714 90647714 T C SNCA 3'UTR 0.09 TCGA-WS-AB45-01 4 92520061 92520061 G A CCSER1 Silent p.T852T 0.15 TCGA-WS-AB45-01 4 94750459 94750459 C G ATOH1 Missense_Mutation p.L128V 0.14 deleterious(0.01) probably_damaging(0.952) TCGA-WS-AB45-01 4 96025646 96025646 C T BMPR1B Missense_Mutation p.T54I 0.15 tolerated(0.45) benign(0.005) TCGA-WS-AB45-01 4 9785349 9785349 G C DRD5 3'UTR 0.13 TCGA-WS-AB45-01 4 9785421 9785421 G T DRD5 3'UTR 0.12 TCGA-WS-AB45-01 4 983343 983343 G A SLC26A1 Missense_Mutation p.R462W 0.17 deleterious(0) possibly_damaging(0.809) TCGA-WS-AB45-01 5 102249652 102249652 C T PAM Nonsense_Mutation p.R95* 0.13 TCGA-WS-AB45-01 5 102364665 102364665 C T PAM Missense_Mutation p.R941W 0.11 deleterious(0) probably_damaging(0.995) TCGA-WS-AB45-01 5 102894994 102894994 G A NUDT12 Missense_Mutation p.R128W 0.15 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 5 108219159 108219159 C T FER Missense_Mutation p.A329V 0.08 tolerated(0.69) benign(0.001) TCGA-WS-AB45-01 5 109159493 109159493 T - MAN2A1 Frame_Shift_Del p.F842Lfs*16 0.11 TCGA-WS-AB45-01 5 112173376 112173376 G T APC Missense_Mutation p.Q695H 0.13 probably_damaging(0.999) TCGA-WS-AB45-01 5 112178937 112178937 G A APC Missense_Mutation p.R2549H 0.09 probably_damaging(1) TCGA-WS-AB45-01 5 112870051 112870051 C T YTHDC2 Missense_Mutation p.R298C 0.19 deleterious(0) probably_damaging(0.935) TCGA-WS-AB45-01 5 114513502 114513502 C T TRIM36 Intron 0.12 TCGA-WS-AB45-01 5 114610916 114610916 T - CCDC112 Frame_Shift_Del p.E306Sfs*20 0.14 TCGA-WS-AB45-01 5 114861081 114861081 T - FEM1C Frame_Shift_Del p.R260Efs*7 0.14 TCGA-WS-AB45-01 5 115782409 115782409 G A SEMA6A Missense_Mutation p.S998L 0.17 deleterious(0.03) benign(0.043) TCGA-WS-AB45-01 5 115783147 115783147 A G SEMA6A Missense_Mutation p.L752P 0.13 deleterious(0) probably_damaging(0.968) TCGA-WS-AB45-01 5 118728816 118728816 G A TNFAIP8 Missense_Mutation p.V113M 0.13 tolerated(0.1) probably_damaging(0.934) TCGA-WS-AB45-01 5 121488570 121488570 C A ZNF474 Silent p.T295T 0.12 TCGA-WS-AB45-01 5 130766672 130766672 T G RAPGEF6 Missense_Mutation p.T1457P 0.13 deleterious_low_confidence(0) benign(0.126) TCGA-WS-AB45-01 5 130939001 130939001 G A RAPGEF6 Missense_Mutation p.R54C 0.14 deleterious(0) possibly_damaging(0.726) TCGA-WS-AB45-01 5 131728269 131728269 G A SLC22A5 Missense_Mutation p.R471H 0.15 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 5 132197700 132197700 G A GDF9 Missense_Mutation p.R316C 0.16 deleterious(0) possibly_damaging(0.637) TCGA-WS-AB45-01 5 132736460 132736460 C T FSTL4 Missense_Mutation p.V127I 0.21 tolerated(1) benign(0.004) TCGA-WS-AB45-01 5 133478781 133478781 G A TCF7 Missense_Mutation p.R339Q 0.15 deleterious(0) probably_damaging(0.947) TCGA-WS-AB45-01 5 133909449 133909449 C T JADE2 Nonsense_Mutation p.R517* 0.19 TCGA-WS-AB45-01 5 13692229 13692229 C T DNAH5 Missense_Mutation p.R4580Q 0.12 possibly_damaging(0.553) TCGA-WS-AB45-01 5 136974670 136974670 G A KLHL3 Silent p.Y397Y 0.20 TCGA-WS-AB45-01 5 137520021 137520021 C T KIF20A Silent p.V482V 0.16 TCGA-WS-AB45-01 5 137801409 137801410 CC - EGR1 5'UTR 0.15 TCGA-WS-AB45-01 5 138713715 138713715 C T SLC23A1 Missense_Mutation p.G472R 0.19 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 5 138730503 138730503 G A PROB1 Nonsense_Mutation p.R90* 0.15 TCGA-WS-AB45-01 5 138730824 138730824 G A PROB1 5'UTR 0.21 TCGA-WS-AB45-01 5 139508232 139508232 G A IGIP 3'UTR 0.20 TCGA-WS-AB45-01 5 139743379 139743379 C T SLC4A9 Silent p.D406D 0.15 TCGA-WS-AB45-01 5 140012748 140012748 G A CD14 5'UTR 0.31 TCGA-WS-AB45-01 5 140168348 140168348 A - PCDHA1 Intron 0.13 TCGA-WS-AB45-01 5 140175794 140175794 C T PCDHA2 Silent p.R415R 0.21 TCGA-WS-AB45-01 5 140181113 140181113 G A PCDHA3 Missense_Mutation p.D111N 0.13 deleterious_low_confidence(0) benign(0.201) TCGA-WS-AB45-01 5 140182517 140182517 G A PCDHA3 Missense_Mutation p.E579K 0.15 deleterious_low_confidence(0.02) benign(0.099) TCGA-WS-AB45-01 5 140188585 140188585 G A PCDHA4 Missense_Mutation p.A605T 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.615) TCGA-WS-AB45-01 5 140207975 140207975 C T PCDHA6 Missense_Mutation p.A100V 0.13 tolerated_low_confidence(0.13) benign(0.131) TCGA-WS-AB45-01 5 140209711 140209711 T C PCDHA6 Missense_Mutation p.S679P 0.11 tolerated_low_confidence(0.07) benign(0.075) TCGA-WS-AB45-01 5 140215255 140215255 C T PCDHA7 Silent p.D429D 0.14 TCGA-WS-AB45-01 5 140255592 140255592 G A PCDHA12 Missense_Mutation p.E179K 0.13 tolerated_low_confidence(0.09) benign(0.006) TCGA-WS-AB45-01 5 140264116 140264116 C T PCDHA13 Missense_Mutation p.R755W 0.17 deleterious_low_confidence(0) benign(0.3) TCGA-WS-AB45-01 5 140501700 140501700 C T PCDHB4 Silent p.S40S 0.15 TCGA-WS-AB45-01 5 140536957 140536957 G A PCDHB17 Missense_Mutation p.V461I 0.28 tolerated_low_confidence(0.12) possibly_damaging(0.71) TCGA-WS-AB45-01 5 140554588 140554588 G A PCDHB7 Silent p.S724S 0.05 TCGA-WS-AB45-01 5 140558278 140558278 G A PCDHB8 Silent p.P221P 0.06 TCGA-WS-AB45-01 5 140558959 140558959 C T PCDHB8 Silent p.N448N 0.07 TCGA-WS-AB45-01 5 140563610 140563610 G A PCDHB16 Silent p.P492P 0.22 TCGA-WS-AB45-01 5 140594294 140594294 C T PCDHB13 Missense_Mutation p.A200V 0.12 tolerated_low_confidence(0.12) benign(0.018) TCGA-WS-AB45-01 5 140596462 140596462 T - PCDHB13 3'UTR 0.15 TCGA-WS-AB45-01 5 140615715 140615715 G A PCDHB18 RNA 0.13 TCGA-WS-AB45-01 5 140720770 140720770 C T PCDHGA2 Silent p.D744D 0.17 TCGA-WS-AB45-01 5 140724255 140724255 G A PCDHGA3 Missense_Mutation p.D219N 0.08 tolerated_low_confidence(0.16) benign(0.027) TCGA-WS-AB45-01 5 140732000 140732000 A C PCDHGB1 Missense_Mutation p.T725P 0.15 tolerated(1) benign(0) TCGA-WS-AB45-01 5 140751495 140751495 G A PCDHGB3 Missense_Mutation p.G512R 0.19 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 5 140762765 140762765 C T PCDHGA7 Missense_Mutation p.A100V 0.18 tolerated_low_confidence(0.08) benign(0.037) TCGA-WS-AB45-01 5 140768881 140768881 C T PCDHGB4 Missense_Mutation p.P477L 0.20 tolerated(0.06) benign(0.262) TCGA-WS-AB45-01 5 140769090 140769090 C T PCDHGB4 Missense_Mutation p.R547C 0.11 deleterious(0.01) benign(0.219) TCGA-WS-AB45-01 5 140784339 140784339 G A PCDHGA9 Missense_Mutation p.R607H 0.15 tolerated_low_confidence(0.17) benign(0.098) TCGA-WS-AB45-01 5 140798791 140798791 A G PCDHGB7 Silent p.S455S 0.10 TCGA-WS-AB45-01 5 140864789 140864790 - T PCDHGC4 Frame_Shift_Ins p.L18Ffs*111 0.10 TCGA-WS-AB45-01 5 140865403 140865403 G A PCDHGC4 Silent p.P221P 0.14 TCGA-WS-AB45-01 5 140871258 140871258 G T PCDHGC5 Missense_Mutation p.E817D 0.14 tolerated(0.32) benign(0.081) TCGA-WS-AB45-01 5 140908772 140908772 A G DIAPH1 Silent p.D915D 0.14 TCGA-WS-AB45-01 5 140956364 140956364 A G DIAPH1 Missense_Mutation p.F452S 0.14 unknown(0) TCGA-WS-AB45-01 5 141030619 141030619 C T FCHSD1 Silent p.Q29Q 0.15 TCGA-WS-AB45-01 5 141041528 141041528 G A ARAP3 Intron 0.12 TCGA-WS-AB45-01 5 141336875 141336875 G A PCDH12 Missense_Mutation p.A181V 0.09 tolerated(0.08) benign(0.134) TCGA-WS-AB45-01 5 14316802 14316802 C T TRIO Missense_Mutation p.R561W 0.14 benign(0.202) TCGA-WS-AB45-01 5 14363929 14363929 G A TRIO Missense_Mutation p.R827H 0.13 probably_damaging(0.994) TCGA-WS-AB45-01 5 1466976 1466976 G A LPCAT1 Silent p.V436V 0.21 TCGA-WS-AB45-01 5 14681650 14681650 G A FAM105B Silent p.T134T 0.14 TCGA-WS-AB45-01 5 148417875 148417875 A G SH3TC2 Silent p.P328P 0.13 TCGA-WS-AB45-01 5 149006810 149006810 G A ARHGEF37 Missense_Mutation p.G546S 0.19 tolerated(1) benign(0.001) TCGA-WS-AB45-01 5 149242756 149242756 G A PDE6A Missense_Mutation p.A811V 0.08 tolerated(0.08) benign(0.002) TCGA-WS-AB45-01 5 149324108 149324108 G T PDE6A Silent p.A43A 0.17 TCGA-WS-AB45-01 5 1494942 1494942 C T LPCAT1 Silent p.A122A 0.15 TCGA-WS-AB45-01 5 149497192 149497192 G - PDGFRB Frame_Shift_Del p.S1043Afs*2 0.09 TCGA-WS-AB45-01 5 149505025 149505025 C A PDGFRB Missense_Mutation p.R597L 0.09 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 5 149624748 149624749 - C CAMK2A Frame_Shift_Ins p.N321Kfs*32 0.11 TCGA-WS-AB45-01 5 149924913 149924913 C T NDST1 Silent p.S670S 0.11 TCGA-WS-AB45-01 5 150030550 150030550 G A SYNPO 3'UTR 0.15 TCGA-WS-AB45-01 5 150031852 150031852 G A SYNPO 3'UTR 0.15 TCGA-WS-AB45-01 5 159686670 159686670 G A CCNJL Missense_Mutation p.T178I 0.12 tolerated(0.06) benign(0.086) TCGA-WS-AB45-01 5 159776098 159776098 C T C1QTNF2 3'UTR 0.15 TCGA-WS-AB45-01 5 160059152 160059152 G A ATP10B Missense_Mutation p.A535V 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-WS-AB45-01 5 161524782 161524782 A - GABRG2 Frame_Shift_Del p.A158Lfs*13 0.13 TCGA-WS-AB45-01 5 16701628 16701628 C T MYO10 Missense_Mutation p.R959Q 0.13 tolerated_low_confidence(0.14) probably_damaging(0.978) TCGA-WS-AB45-01 5 167868741 167868741 C T WWC1 Missense_Mutation p.R779C 0.13 tolerated(0.13) benign(0.057) TCGA-WS-AB45-01 5 168216613 168216613 G A SLIT3 Missense_Mutation p.S344L 0.15 deleterious(0) benign(0.361) TCGA-WS-AB45-01 5 170610183 170610183 A T RANBP17 Missense_Mutation p.L626F 0.16 tolerated(0.07) possibly_damaging(0.832) TCGA-WS-AB45-01 5 171509391 171509391 C T STK10 Missense_Mutation p.R643H 0.13 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 5 173416274 173416274 C T C5orf47 Missense_Mutation p.A3V 0.08 tolerated(0.09) possibly_damaging(0.873) TCGA-WS-AB45-01 5 17354211 17354211 T C CTD-2139B15.2 Intron 0.11 TCGA-WS-AB45-01 5 174870011 174870011 G A DRD1 Missense_Mutation p.S31L 0.14 tolerated(0.64) possibly_damaging(0.453) TCGA-WS-AB45-01 5 175959475 175959475 G - RNF44 5'UTR 0.16 TCGA-WS-AB45-01 5 176017275 176017275 C T CDHR2 Silent p.L1099L 0.13 TCGA-WS-AB45-01 5 176083748 176083748 G C TSPAN17 Missense_Mutation p.Q229H 0.18 tolerated(0.1) probably_damaging(0.987) TCGA-WS-AB45-01 5 176301392 176301392 C - UNC5A Frame_Shift_Del p.L403Wfs*40 0.25 TCGA-WS-AB45-01 5 176721050 176721050 G A NSD1 Silent p.P2227P 0.08 TCGA-WS-AB45-01 5 176885555 176885555 G A DBN1 Missense_Mutation p.A429V 0.14 tolerated(0.06) benign(0.047) TCGA-WS-AB45-01 5 176917501 176917501 C T PDLIM7 Intron 0.19 TCGA-WS-AB45-01 5 176923464 176923464 C T PDLIM7 Missense_Mutation p.R17Q 0.20 deleterious(0.01) possibly_damaging(0.577) TCGA-WS-AB45-01 5 176931172 176931172 C T DOK3 Missense_Mutation p.G435S 0.18 tolerated(1) benign(0.001) TCGA-WS-AB45-01 5 176963436 176963436 G A FAM193B Silent p.C333C 0.17 TCGA-WS-AB45-01 5 177673420 177673420 G A COL23A1 Missense_Mutation p.S444L 0.17 tolerated(0.31) benign(0.009) TCGA-WS-AB45-01 5 178459768 178459768 A G ZNF879 Silent p.T273T 0.13 TCGA-WS-AB45-01 5 179222569 179222569 C - LTC4S Intron 0.12 TCGA-WS-AB45-01 5 179263448 179263448 G A SQSTM1 Missense_Mutation p.R393Q 0.08 deleterious(0.01) possibly_damaging(0.831) TCGA-WS-AB45-01 5 179267916 179267916 C T C5orf45 Missense_Mutation p.V165M 0.21 deleterious(0.02) possibly_damaging(0.76) TCGA-WS-AB45-01 5 179331706 179331706 C T TBC1D9B Silent p.A75A 0.20 TCGA-WS-AB45-01 5 179728457 179728457 C T GFPT2 3'UTR 0.08 TCGA-WS-AB45-01 5 180661536 180661536 G A TRIM41 Missense_Mutation p.V552M 0.18 tolerated(0.14) benign(0.34) TCGA-WS-AB45-01 5 2753424 2753424 C T C5orf38 Missense_Mutation p.A120V 0.09 deleterious_low_confidence(0) unknown(0) TCGA-WS-AB45-01 5 31322939 31322939 T C CDH6 Missense_Mutation p.F633L 0.15 tolerated(0.06) probably_damaging(0.931) TCGA-WS-AB45-01 5 32052826 32052826 A - PDZD2 Frame_Shift_Del p.G594Afs*45 0.10 TCGA-WS-AB45-01 5 32087444 32087444 C T PDZD2 Missense_Mutation p.A1297V 0.13 tolerated(0.99) benign(0) TCGA-WS-AB45-01 5 32089087 32089087 G A PDZD2 Missense_Mutation p.V1845I 0.09 tolerated(0.12) benign(0.011) TCGA-WS-AB45-01 5 32274141 32274141 C T MTMR12 Missense_Mutation p.C77Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 5 32407068 32407068 T C ZFR Silent p.Q281Q 0.16 TCGA-WS-AB45-01 5 35025901 35025901 C T AGXT2 Silent p.V310V 0.12 TCGA-WS-AB45-01 5 35700714 35700715 - A SPEF2 Frame_Shift_Ins p.A756Sfs*9 0.08 TCGA-WS-AB45-01 5 36962227 36962227 G A NIPBL Missense_Mutation p.R154Q 0.18 tolerated(0.27) possibly_damaging(0.791) TCGA-WS-AB45-01 5 37153890 37153891 TA - C5orf42 Frame_Shift_Del p.I2721Rfs*8 0.12 TCGA-WS-AB45-01 5 37167150 37167150 T - C5orf42 Frame_Shift_Del p.R2467Gfs*18 0.16 TCGA-WS-AB45-01 5 37183623 37183623 G T C5orf42 Missense_Mutation p.L1554I 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 5 38337656 38337656 C T EGFLAM Silent p.G44G 0.12 TCGA-WS-AB45-01 5 42801211 42801211 G A SEPP1 Missense_Mutation p.H253Y 0.14 tolerated(0.26) benign(0.426) TCGA-WS-AB45-01 5 42801388 42801388 C T SEPP1 Missense_Mutation p.V194M 0.14 tolerated(0.09) probably_damaging(0.962) TCGA-WS-AB45-01 5 464517 464517 C T EXOC3 Missense_Mutation p.P589L 0.11 tolerated(0.11) benign(0.003) TCGA-WS-AB45-01 5 465271 465271 C T EXOC3 Missense_Mutation p.R608W 0.14 tolerated(0.13) possibly_damaging(0.826) TCGA-WS-AB45-01 5 5186343 5186343 C T ADAMTS16 Silent p.Y314Y 0.20 TCGA-WS-AB45-01 5 52145208 52145208 G A ITGA1 Missense_Mutation p.R24H 0.22 tolerated(0.3) benign(0) TCGA-WS-AB45-01 5 52344260 52344260 T C ITGA2 Missense_Mutation p.I152T 0.15 deleterious(0) benign(0.22) TCGA-WS-AB45-01 5 52360928 52360928 C T ITGA2 Missense_Mutation p.R597C 0.11 deleterious(0) possibly_damaging(0.885) TCGA-WS-AB45-01 5 53815285 53815285 C T SNX18 Silent p.D501D 0.19 TCGA-WS-AB45-01 5 54420818 54420818 C T CDC20B Missense_Mutation p.R343Q 0.18 deleterious(0) possibly_damaging(0.872) TCGA-WS-AB45-01 5 54563027 54563027 C T DHX29 Missense_Mutation p.R1155H 0.14 deleterious(0.02) benign(0.01) TCGA-WS-AB45-01 5 54572100 54572100 T - DHX29 Frame_Shift_Del p.K807Nfs*16 0.16 TCGA-WS-AB45-01 5 55237477 55237477 C - IL6ST Frame_Shift_Del p.S731Lfs*57 0.12 TCGA-WS-AB45-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.11 TCGA-WS-AB45-01 5 56155651 56155651 G A MAP3K1 Missense_Mutation p.R248Q 0.14 deleterious_low_confidence(0) benign(0.045) TCGA-WS-AB45-01 5 56219767 56219767 T - MIER3 Frame_Shift_Del p.R342Dfs*15 0.12 TCGA-WS-AB45-01 5 60188858 60188858 C T ERCC8 Intron 0.12 TCGA-WS-AB45-01 5 63507894 63507894 T C RNF180 Silent p.D46D 0.17 TCGA-WS-AB45-01 5 677900 677900 G A TPPP Silent p.T92T 0.17 TCGA-WS-AB45-01 5 72742890 72742890 C A FOXD1 Missense_Mutation p.R433L 0.09 unknown(0) TCGA-WS-AB45-01 5 73931264 73931264 C - ENC1 Frame_Shift_Del p.S350Lfs*37 0.16 TCGA-WS-AB45-01 5 74981104 74981104 G A POC5 Silent p.S445S 0.14 TCGA-WS-AB45-01 5 75699344 75699344 C T IQGAP2 5'UTR 0.18 TCGA-WS-AB45-01 5 78359563 78359563 G A DMGDH Missense_Mutation p.A50V 0.12 deleterious(0.04) possibly_damaging(0.844) TCGA-WS-AB45-01 5 78422012 78422012 A G BHMT Missense_Mutation p.N257D 0.12 tolerated(0.42) benign(0.004) TCGA-WS-AB45-01 5 79034412 79034412 C T CMYA5 Missense_Mutation p.P3275L 0.17 benign(0.001) TCGA-WS-AB45-01 5 79773062 79773062 G T ZFYVE16 Missense_Mutation p.G1496C 0.12 tolerated(0.06) probably_damaging(1) TCGA-WS-AB45-01 5 80559384 80559384 G A CKMT2 Silent p.A363A 0.14 TCGA-WS-AB45-01 5 82940422 82940422 G A HAPLN1 Nonsense_Mutation p.Q179* 0.16 TCGA-WS-AB45-01 5 82940461 82940461 G A HAPLN1 Nonsense_Mutation p.R166* 0.14 TCGA-WS-AB45-01 5 86690556 86690556 T A CCNH Intron 0.27 TCGA-WS-AB45-01 5 88018588 88018588 A G MEF2C Missense_Mutation p.S429P 0.18 deleterious(0.03) probably_damaging(0.993) TCGA-WS-AB45-01 5 908174 908174 C T TRIP13 Silent p.F248F 0.14 TCGA-WS-AB45-01 5 9122803 9122803 G A SEMA5A Silent p.C582C 0.14 TCGA-WS-AB45-01 5 94852430 94852430 C T TTC37 Missense_Mutation p.D821N 0.14 deleterious(0.02) benign(0.05) TCGA-WS-AB45-01 5 94957201 94957201 C T GPR150 Missense_Mutation p.R408W 0.09 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 5 96430684 96430684 A G LIX1 Missense_Mutation p.M206T 0.12 deleterious(0) probably_damaging(0.922) TCGA-WS-AB45-01 5 98236532 98236532 C T CHD1 Missense_Mutation p.R281Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 6 10796248 10796248 C T MAK Missense_Mutation p.V376I 0.11 tolerated(0.46) benign(0.001) TCGA-WS-AB45-01 6 108076840 108076840 G A SCML4 Intron 0.18 TCGA-WS-AB45-01 6 109775271 109775271 C A MICAL1 Silent p.G43G 0.20 TCGA-WS-AB45-01 6 10990048 10990048 G A ELOVL2 Missense_Mutation p.T218M 0.17 tolerated(0.22) possibly_damaging(0.824) TCGA-WS-AB45-01 6 110064975 110064975 G T FIG4 Missense_Mutation p.K379N 0.16 deleterious(0) probably_damaging(0.987) TCGA-WS-AB45-01 6 11185727 11185727 C T NEDD9 Missense_Mutation p.A725T 0.24 deleterious(0.02) possibly_damaging(0.614) TCGA-WS-AB45-01 6 11191425 11191425 G A NEDD9 Missense_Mutation p.P226L 0.20 deleterious(0.04) benign(0.052) TCGA-WS-AB45-01 6 112021400 112021400 A G FYN Missense_Mutation p.S257P 0.14 deleterious(0.03) benign(0.124) TCGA-WS-AB45-01 6 112671165 112671165 C T RFPL4B Silent p.H85H 0.16 TCGA-WS-AB45-01 6 116914256 116914256 G C RWDD1 Missense_Mutation p.A242P 0.14 tolerated_low_confidence(0.25) unknown(0) TCGA-WS-AB45-01 6 117237372 117237372 T - RFX6 Frame_Shift_Del p.L291Yfs*53 0.08 TCGA-WS-AB45-01 6 12121304 12121304 C T HIVEP1 Missense_Mutation p.R426C 0.17 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 123539804 123539804 C T TRDN Missense_Mutation p.R711H 0.11 tolerated_low_confidence(0.34) benign(0.003) TCGA-WS-AB45-01 6 127767872 127767872 C T KIAA0408 Missense_Mutation p.R531H 0.22 deleterious(0) possibly_damaging(0.541) TCGA-WS-AB45-01 6 127834126 127834128 TGT - SOGA3 In_Frame_Del p.T465del 0.10 TCGA-WS-AB45-01 6 128320016 128320016 C T PTPRK Missense_Mutation p.R843H 0.08 tolerated(0.16) benign(0.01) TCGA-WS-AB45-01 6 128385922 128385922 G A PTPRK Silent p.C725C 0.21 TCGA-WS-AB45-01 6 129204433 129204433 G A LAMA2 Missense_Mutation p.G15R 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-WS-AB45-01 6 132029807 132029807 G T CTAGE9 3'UTR 0.16 TCGA-WS-AB45-01 6 132030574 132030574 C T CTAGE9 Silent p.R528R 0.14 TCGA-WS-AB45-01 6 13206254 13206254 G A PHACTR1 Missense_Mutation p.S291N 0.12 tolerated(0.09) possibly_damaging(0.682) TCGA-WS-AB45-01 6 132891957 132891957 C A TAAR6 Missense_Mutation p.A166D 0.10 deleterious(0.02) possibly_damaging(0.493) TCGA-WS-AB45-01 6 13306535 13306535 A G TBC1D7 Intron 0.17 TCGA-WS-AB45-01 6 133100439 133100439 C T SLC18B1 Missense_Mutation p.D255N 0.15 deleterious(0) possibly_damaging(0.715) TCGA-WS-AB45-01 6 135263589 135263589 G T ALDH8A1 Missense_Mutation p.L134M 0.16 tolerated(0.67) benign(0.01) TCGA-WS-AB45-01 6 13591965 13591965 G A SIRT5 Missense_Mutation p.R105Q 0.19 deleterious(0.05) probably_damaging(0.943) TCGA-WS-AB45-01 6 136512844 136512844 G A PDE7B Missense_Mutation p.A407T 0.13 tolerated(0.55) benign(0.002) TCGA-WS-AB45-01 6 137479603 137479603 A T IL22RA2 Missense_Mutation p.H26Q 0.27 tolerated(0.62) benign(0.06) TCGA-WS-AB45-01 6 138745904 138745904 G A NHSL1 Nonsense_Mutation p.R1383* 0.19 TCGA-WS-AB45-01 6 139247588 139247588 T C REPS1 Missense_Mutation p.S430G 0.16 tolerated(0.08) probably_damaging(0.986) TCGA-WS-AB45-01 6 142741125 142741125 G A GPR126 Missense_Mutation p.R1068H 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 143081680 143081680 A T HIVEP2 Missense_Mutation p.D1915E 0.16 tolerated(0.34) benign(0.009) TCGA-WS-AB45-01 6 144093563 144093563 C T PHACTR2 Silent p.D467D 0.10 TCGA-WS-AB45-01 6 148795280 148795280 G A SASH1 Silent p.T183T 0.20 TCGA-WS-AB45-01 6 148865932 148865932 C T SASH1 Missense_Mutation p.T1109M 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 6 150141808 150141808 A G LRP11 Silent p.A460A 0.15 TCGA-WS-AB45-01 6 151358123 151358123 G A MTHFD1L Missense_Mutation p.C906Y 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 151669923 151669923 G A AKAP12 Missense_Mutation p.D133N 0.12 deleterious(0.04) probably_damaging(0.978) TCGA-WS-AB45-01 6 151671231 151671231 T C AKAP12 Missense_Mutation p.S569P 0.16 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 6 15496909 15496909 G A JARID2 Missense_Mutation p.V485M 0.10 tolerated_low_confidence(0.23) benign(0.012) TCGA-WS-AB45-01 6 155566814 155566814 T C TIAM2 Missense_Mutation p.Y1201H 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 157528779 157528779 G A ARID1B Silent p.T2168T 0.14 TCGA-WS-AB45-01 6 158505189 158505189 A G SYNJ2 Missense_Mutation p.Q1064R 0.14 tolerated_low_confidence(0.05) benign(0.003) TCGA-WS-AB45-01 6 158514061 158514062 - C SYNJ2 Frame_Shift_Ins p.L1226Tfs*32 0.17 TCGA-WS-AB45-01 6 158923968 158923968 C T TULP4 Silent p.D1091D 0.09 TCGA-WS-AB45-01 6 158927676 158927676 G A TULP4 Missense_Mutation p.V1528M 0.22 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 6 159086468 159086468 C T SYTL3 Missense_Mutation p.A51V 0.15 deleterious(0.04) benign(0.035) TCGA-WS-AB45-01 6 159647534 159647534 G A FNDC1 Missense_Mutation p.V368I 0.09 deleterious(0.02) unknown(0) TCGA-WS-AB45-01 6 160328458 160328458 G T MAS1 Missense_Mutation p.W157C 0.09 deleterious(0.03) probably_damaging(0.977) TCGA-WS-AB45-01 6 160469505 160469505 G A IGF2R Missense_Mutation p.R815Q 0.16 deleterious(0.05) probably_damaging(0.998) TCGA-WS-AB45-01 6 160484607 160484607 G T IGF2R Missense_Mutation p.K1277N 0.11 tolerated(0.13) benign(0.043) TCGA-WS-AB45-01 6 160526121 160526121 G A IGF2R 3'UTR 0.20 TCGA-WS-AB45-01 6 161006140 161006140 A G LPA Silent p.C1409C 0.10 TCGA-WS-AB45-01 6 161015143 161015143 G A LPA Missense_Mutation p.T1159M 0.07 tolerated(0.13) probably_damaging(0.996) TCGA-WS-AB45-01 6 161027661 161027661 G A LPA Missense_Mutation p.P878L 0.10 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 6 16145393 16145393 G A MYLIP Missense_Mutation p.G365S 0.14 tolerated(0.58) benign(0.002) TCGA-WS-AB45-01 6 162622178 162622178 C T PARK2 Silent p.T173T 0.11 TCGA-WS-AB45-01 6 167438322 167438322 C - FGFR1OP Frame_Shift_Del p.L289* 0.11 TCGA-WS-AB45-01 6 167738608 167738608 C T TTLL2 5'UTR 0.21 TCGA-WS-AB45-01 6 168188168 168188168 C A C6orf123 3'UTR 0.27 TCGA-WS-AB45-01 6 168325729 168325729 A - MLLT4 Frame_Shift_Del p.K1014Sfs*20 0.12 TCGA-WS-AB45-01 6 168708801 168708801 G A DACT2 Missense_Mutation p.L546F 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-WS-AB45-01 6 170594454 170594454 G A DLL1 Missense_Mutation p.T307M 0.14 deleterious(0) probably_damaging(0.982) TCGA-WS-AB45-01 6 17662285 17662285 T - NUP153 Frame_Shift_Del p.N411Ifs*2 0.13 TCGA-WS-AB45-01 6 17780980 17780980 G A KIF13A Missense_Mutation p.A1276V 0.13 tolerated(1) benign(0.019) TCGA-WS-AB45-01 6 17831402 17831402 T C KIF13A Missense_Mutation p.D444G 0.15 tolerated(0.07) benign(0.418) TCGA-WS-AB45-01 6 22570366 22570366 G A HDGFL1 Missense_Mutation p.A188T 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.483) TCGA-WS-AB45-01 6 25551192 25551192 A - LRRC16A Frame_Shift_Del p.A797Pfs*7 0.15 TCGA-WS-AB45-01 6 26123810 26123810 G A HIST1H2BC Missense_Mutation p.A108V 0.17 deleterious_low_confidence(0.02) benign(0.209) TCGA-WS-AB45-01 6 26285278 26285278 G A HIST1H4H 3'UTR 0.22 TCGA-WS-AB45-01 6 26285451 26285451 G A HIST1H4H Nonsense_Mutation p.R93* 0.14 TCGA-WS-AB45-01 6 26451935 26451935 G A BTN3A3 Missense_Mutation p.A351T 0.15 deleterious(0) benign(0.223) TCGA-WS-AB45-01 6 26465524 26465524 A - BTN2A1 Frame_Shift_Del p.K277Rfs*18 0.10 TCGA-WS-AB45-01 6 26638777 26638777 T C ZNF322 Missense_Mutation p.Y2C 0.12 tolerated_low_confidence(0.14) benign(0) TCGA-WS-AB45-01 6 27420684 27420684 T - ZNF184 Frame_Shift_Del p.E219Rfs*48 0.11 TCGA-WS-AB45-01 6 27839744 27839744 C T HIST1H3I Missense_Mutation p.R117H 0.22 deleterious_low_confidence(0.05) benign(0.409) TCGA-WS-AB45-01 6 27860544 27860545 - T HIST1H2AM Frame_Shift_Ins p.K130Qfs*7 0.14 TCGA-WS-AB45-01 6 27879715 27879715 C T OR2B2 Missense_Mutation p.R128Q 0.24 tolerated(0.25) benign(0.014) TCGA-WS-AB45-01 6 28121493 28121493 G A ZKSCAN8 Missense_Mutation p.G479S 0.10 tolerated(0.72) probably_damaging(0.939) TCGA-WS-AB45-01 6 28135186 28135186 C T ZNF192P1 RNA 0.11 TCGA-WS-AB45-01 6 29055051 29055051 A - OR2B3 5'UTR 0.15 TCGA-WS-AB45-01 6 29911973 29911973 T C HLA-A Missense_Mutation p.F232L 0.17 deleterious_low_confidence(0.02) benign(0.053) TCGA-WS-AB45-01 6 29912007 29912007 G A HLA-A Missense_Mutation p.R243Q 0.10 tolerated_low_confidence(0.06) benign(0.019) TCGA-WS-AB45-01 6 29912092 29912092 G A HLA-A Silent p.V271V 0.07 TCGA-WS-AB45-01 6 29912104 29912104 T C HLA-A Silent p.S275S 0.08 TCGA-WS-AB45-01 6 30039132 30039132 C T RNF39 Missense_Mutation p.R340H 0.12 tolerated(0.53) probably_damaging(0.961) TCGA-WS-AB45-01 6 30043449 30043449 C T RNF39 Missense_Mutation p.A40T 0.23 deleterious_low_confidence(0.05) benign(0.003) TCGA-WS-AB45-01 6 30080449 30080449 T C TRIM31 Missense_Mutation p.E45G 0.19 tolerated(0.08) possibly_damaging(0.904) TCGA-WS-AB45-01 6 30139771 30139771 G A TRIM15 Missense_Mutation p.R348H 0.12 tolerated(0.08) benign(0.008) TCGA-WS-AB45-01 6 30550916 30550916 C T ABCF1 Missense_Mutation p.A289V 0.12 tolerated(0.29) benign(0.183) TCGA-WS-AB45-01 6 30551386 30551386 T C ABCF1 Missense_Mutation p.L306P 0.13 deleterious(0) possibly_damaging(0.853) TCGA-WS-AB45-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.10 TCGA-WS-AB45-01 6 30679803 30679803 G A MDC1 Missense_Mutation p.P639L 0.18 deleterious(0.02) benign(0.008) TCGA-WS-AB45-01 6 30887547 30887547 C T VARS2 Nonsense_Mutation p.R393* 0.20 TCGA-WS-AB45-01 6 31116184 31116184 G A CCHCR1 Silent p.S526S 0.12 TCGA-WS-AB45-01 6 31129457 31129457 G A TCF19 Missense_Mutation p.A158T 0.12 tolerated(0.21) benign(0.029) TCGA-WS-AB45-01 6 31323362 31323363 - G HLA-B Frame_Shift_Ins p.T211Dfs*10 0.12 TCGA-WS-AB45-01 6 31591537 31591537 C T PRRC2A Silent p.L47L 0.11 TCGA-WS-AB45-01 6 31605476 31605476 C - PRRC2A 3'UTR 0.11 TCGA-WS-AB45-01 6 31623843 31623843 G A APOM Missense_Mutation p.V34M 0.12 tolerated(0.23) benign(0.005) TCGA-WS-AB45-01 6 31644830 31644830 G C LY6G5C Silent p.T119T 0.16 TCGA-WS-AB45-01 6 31762942 31762942 G A VARS Missense_Mutation p.A18V 0.16 tolerated_low_confidence(0.39) benign(0.005) TCGA-WS-AB45-01 6 31847925 31847925 G A EHMT2 Missense_Mutation p.A1190V 0.15 deleterious(0.01) possibly_damaging(0.899) TCGA-WS-AB45-01 6 31913118 31913119 - T C2 Frame_Shift_Ins p.L750Ffs*39 0.14 TCGA-WS-AB45-01 6 31930833 31930833 C A SKIV2L Silent p.T456T 0.12 TCGA-WS-AB45-01 6 32032787 32032787 C T TNXB Missense_Mutation p.E2218K 0.12 benign(0.024) TCGA-WS-AB45-01 6 32041542 32041542 C T RNA5SP206 3'Flank 0.15 TCGA-WS-AB45-01 6 32083636 32083636 G - ATF6B Frame_Shift_Del p.S665Rfs*46 0.12 TCGA-WS-AB45-01 6 32117029 32117029 C T PRRT1 Silent p.A297A 0.21 TCGA-WS-AB45-01 6 32135151 32135151 G A EGFL8 Missense_Mutation p.R209H 0.17 tolerated(0.45) benign(0.001) TCGA-WS-AB45-01 6 32150142 32150142 G - AGER Frame_Shift_Del p.S283Afs*4 0.14 TCGA-WS-AB45-01 6 32159969 32159969 C T GPSM3 Missense_Mutation p.R34Q 0.09 deleterious_low_confidence(0.05) unknown(0) TCGA-WS-AB45-01 6 33036486 33036486 C T HLA-DPA1 Missense_Mutation p.V242I 0.10 tolerated(1) benign(0.004) TCGA-WS-AB45-01 6 33139298 33139298 C A COL11A2 Silent p.V982V 0.11 TCGA-WS-AB45-01 6 33160001 33160001 C T COL11A2 Missense_Mutation p.R6H 0.20 probably_damaging(0.977) TCGA-WS-AB45-01 6 33235703 33235703 G A VPS52 Missense_Mutation p.T291M 0.19 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 6 33247083 33247083 C T WDR46 Silent p.R601R 0.13 TCGA-WS-AB45-01 6 33260056 33260056 G A RGL2 Silent p.Y719Y 0.09 TCGA-WS-AB45-01 6 33263897 33263897 G T RGL2 Missense_Mutation p.L226M 0.12 tolerated(0.24) possibly_damaging(0.825) TCGA-WS-AB45-01 6 33374046 33374046 G A KIFC1 Missense_Mutation p.R537H 0.16 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 33380129 33380129 G A PHF1 Missense_Mutation p.R30Q 0.17 deleterious(0.02) benign(0.432) TCGA-WS-AB45-01 6 35108639 35108639 G A TCP11 Silent p.D16D 0.09 TCGA-WS-AB45-01 6 35210476 35210476 C T SCUBE3 Missense_Mutation p.R538W 0.13 tolerated(0.12) possibly_damaging(0.886) TCGA-WS-AB45-01 6 35210996 35210996 G A SCUBE3 Missense_Mutation p.R631H 0.15 tolerated(0.69) benign(0.026) TCGA-WS-AB45-01 6 35289075 35289075 C - DEF6 Frame_Shift_Del p.S597Rfs*39 0.13 TCGA-WS-AB45-01 6 35423873 35423873 C T FANCE Missense_Mutation p.R200C 0.15 deleterious(0.02) probably_damaging(0.939) TCGA-WS-AB45-01 6 35705824 35705824 C T ARMC12 Missense_Mutation p.R89W 0.12 deleterious(0.01) probably_damaging(0.924) TCGA-WS-AB45-01 6 36040669 36040670 - T MAPK14 Frame_Shift_Ins p.M109Ifs*17 0.14 TCGA-WS-AB45-01 6 36169405 36169405 G A BRPF3 Missense_Mutation p.G436R 0.13 tolerated(0.18) benign(0.002) TCGA-WS-AB45-01 6 36172582 36172582 C T BRPF3 Silent p.N532N 0.24 TCGA-WS-AB45-01 6 36172583 36172583 G A BRPF3 Missense_Mutation p.A533T 0.11 tolerated(0.39) benign(0.105) TCGA-WS-AB45-01 6 37141795 37141795 G A PIM1 Missense_Mutation p.M290I 0.12 tolerated(0.07) benign(0.023) TCGA-WS-AB45-01 6 39284067 39284067 G A KCNK16 Intron 0.18 TCGA-WS-AB45-01 6 39284706 39284706 G A KCNK16 Silent p.G171G 0.17 TCGA-WS-AB45-01 6 40399549 40399549 G A LRFN2 Missense_Mutation p.S435L 0.11 deleterious(0) benign(0.354) TCGA-WS-AB45-01 6 4052975 4052975 A - PRPF4B Frame_Shift_Del p.K780Nfs*13 0.11 TCGA-WS-AB45-01 6 41001903 41001903 G A UNC5CL Missense_Mutation p.R135C 0.16 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 41555161 41555161 G A FOXP4 Silent p.S261S 0.11 TCGA-WS-AB45-01 6 41562614 41562614 G A FOXP4 Missense_Mutation p.V515M 0.23 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 41738372 41738372 G A FRS3 Silent p.T488T 0.12 TCGA-WS-AB45-01 6 41738623 41738623 G A FRS3 Missense_Mutation p.R405C 0.18 deleterious(0.03) probably_damaging(0.95) TCGA-WS-AB45-01 6 41774116 41774116 G A USP49 Silent p.S202S 0.25 TCGA-WS-AB45-01 6 42848718 42848718 A G RPL7L1 Intron 0.15 TCGA-WS-AB45-01 6 43146057 43146057 G A SRF Silent p.T396T 0.14 TCGA-WS-AB45-01 6 43227423 43227423 G A TTBK1 Missense_Mutation p.R468Q 0.16 possibly_damaging(0.594) TCGA-WS-AB45-01 6 43251699 43251699 C T TTBK1 Missense_Mutation p.S1074L 0.19 probably_damaging(0.978) TCGA-WS-AB45-01 6 43252917 43252918 AG - TTBK1 Frame_Shift_Del p.S1259Pfs*25 0.10 TCGA-WS-AB45-01 6 43738877 43738877 G - VEGFA Frame_Shift_Del p.G146Efs*4 0.14 TCGA-WS-AB45-01 6 44390389 44390391 CTT - CDC5L In_Frame_Del p.S417del 0.12 TCGA-WS-AB45-01 6 46293129 46293129 C T RCAN2 Intron 0.16 TCGA-WS-AB45-01 6 4935874 4935874 C T CDYL Nonsense_Mutation p.R273* 0.14 TCGA-WS-AB45-01 6 51524181 51524181 G A PKHD1 Silent p.L3581L 0.18 TCGA-WS-AB45-01 6 51882397 51882397 C T PKHD1 Missense_Mutation p.R1804H 0.06 tolerated(1) benign(0) TCGA-WS-AB45-01 6 56418265 56418265 C T DST Missense_Mutation p.A2486T 0.15 benign(0.005) TCGA-WS-AB45-01 6 56473107 56473107 T - DST Intron 0.09 TCGA-WS-AB45-01 6 6266872 6266872 C T F13A1 Missense_Mutation p.V164I 0.16 tolerated(0.22) benign(0.023) TCGA-WS-AB45-01 6 64395344 64395344 C A PHF3 Missense_Mutation p.S574Y 0.18 deleterious(0) benign(0.157) TCGA-WS-AB45-01 6 64421675 64421676 - T PHF3 Frame_Shift_Ins p.N1400* 0.14 TCGA-WS-AB45-01 6 65301297 65301297 C T EYS Missense_Mutation p.S1488N 0.12 tolerated(0.07) possibly_damaging(0.859) TCGA-WS-AB45-01 6 72945357 72945357 C T RIMS1 Nonsense_Mutation p.R595* 0.22 TCGA-WS-AB45-01 6 73900405 73900405 A G KCNQ5 Missense_Mutation p.R582G 0.18 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 75797396 75797397 - G COL12A1 Frame_Shift_Ins p.G3027Wfs*19 0.09 TCGA-WS-AB45-01 6 75812400 75812401 - G COL12A1 Frame_Shift_Ins p.G2777Wfs*37 0.11 TCGA-WS-AB45-01 6 7583168 7583168 G A DSP Silent p.E1891E 0.17 TCGA-WS-AB45-01 6 76018362 76018362 C T FILIP1 3'UTR 0.12 TCGA-WS-AB45-01 6 76640716 76640716 C A IMPG1 Missense_Mutation p.G733C 0.11 deleterious(0) possibly_damaging(0.789) TCGA-WS-AB45-01 6 7727797 7727797 G A BMP6 Silent p.A203A 0.21 TCGA-WS-AB45-01 6 79688430 79688430 T C PHIP Splice_Site p.X924_splice 0.16 TCGA-WS-AB45-01 6 79695140 79695140 G A PHIP Silent p.G822G 0.11 TCGA-WS-AB45-01 6 82933211 82933211 G A IBTK Missense_Mutation p.T357I 0.11 tolerated(0.11) benign(0.042) TCGA-WS-AB45-01 6 88854620 88854620 G A CNR1 Missense_Mutation p.T125M 0.14 tolerated(0.23) possibly_damaging(0.891) TCGA-WS-AB45-01 6 89673135 89673135 G T RNGTT 5'UTR 0.13 TCGA-WS-AB45-01 6 89793553 89793553 C T PNRC1 Nonsense_Mutation p.Q208* 0.13 TCGA-WS-AB45-01 6 89978860 89978860 G A GABRR2 Missense_Mutation p.R128W 0.11 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 6 90660240 90660240 C T BACH2 Missense_Mutation p.A529T 0.18 tolerated(0.47) probably_damaging(0.988) TCGA-WS-AB45-01 6 90660586 90660586 C - BACH2 Frame_Shift_Del p.P414Lfs*18 0.17 TCGA-WS-AB45-01 6 94067982 94067982 G A EPHA7 Missense_Mutation p.A327V 0.09 tolerated(0.07) benign(0.08) TCGA-WS-AB45-01 7 100028301 100028301 G A MEPCE Silent p.P220P 0.10 TCGA-WS-AB45-01 7 100033975 100033975 G A PPP1R35 Missense_Mutation p.S8L 0.11 deleterious_low_confidence(0.02) benign(0.118) TCGA-WS-AB45-01 7 100246280 100246280 C T ACTL6B Missense_Mutation p.V190I 0.12 deleterious(0.02) possibly_damaging(0.826) TCGA-WS-AB45-01 7 100279547 100279547 C T GIGYF1 Missense_Mutation p.G999R 0.20 tolerated(0.34) probably_damaging(0.976) TCGA-WS-AB45-01 7 100349987 100349987 C A ZAN Silent p.T753T 0.08 TCGA-WS-AB45-01 7 100366269 100366269 G A ZAN Missense_Mutation p.R1693H 0.15 unknown(0) TCGA-WS-AB45-01 7 100366333 100366333 C A ZAN Silent p.S1714S 0.12 TCGA-WS-AB45-01 7 100482100 100482100 G A SRRT Missense_Mutation p.R290Q 0.13 tolerated(0.51) benign(0.124) TCGA-WS-AB45-01 7 100490220 100490220 T G ACHE Missense_Mutation p.S430R 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-WS-AB45-01 7 100491105 100491105 C T ACHE Missense_Mutation p.R250Q 0.10 tolerated(0.21) benign(0.257) TCGA-WS-AB45-01 7 100679512 100679512 C T MUC17 Silent p.T1605T 0.13 TCGA-WS-AB45-01 7 100687025 100687025 A G MUC17 Missense_Mutation p.T4110A 0.15 unknown(0) TCGA-WS-AB45-01 7 100730882 100730882 G A TRIM56 Missense_Mutation p.G97R 0.13 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-WS-AB45-01 7 101821817 101821817 C T CUX1 Silent p.I310I 0.11 TCGA-WS-AB45-01 7 101891913 101891913 C T CUX1 Missense_Mutation p.A1381V 0.10 tolerated(0.13) unknown(0) TCGA-WS-AB45-01 7 103175829 103175829 C T RELN Missense_Mutation p.R2428Q 0.12 tolerated(0.06) benign(0.101) TCGA-WS-AB45-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.10 TCGA-WS-AB45-01 7 105112588 105112588 G A PUS7 Missense_Mutation p.R410C 0.11 deleterious(0) possibly_damaging(0.868) TCGA-WS-AB45-01 7 105662755 105662755 A G CDHR3 Missense_Mutation p.Y646C 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 7 107395884 107395909 TGCTATGACTGTGCTATTTTACATGA GCTATGACTGTGCTATTTTACATG CBLL1 Frame_Shift_Del p.C130Afs*13 0.08 TCGA-WS-AB45-01 7 107557307 107557307 G A DLD Missense_Mutation p.R315Q 0.13 deleterious(0.01) probably_damaging(1) TCGA-WS-AB45-01 7 107823237 107823237 G A NRCAM Missense_Mutation p.T811M 0.14 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 7 111584918 111584918 G A DOCK4 Silent p.G264G 0.07 TCGA-WS-AB45-01 7 112461785 112461785 T - C7orf60 3'UTR 0.09 TCGA-WS-AB45-01 7 1132853 1132853 C T GPER1 3'UTR 0.10 TCGA-WS-AB45-01 7 113520098 113520098 G A PPP1R3A Missense_Mutation p.P350L 0.14 tolerated(0.05) benign(0.311) TCGA-WS-AB45-01 7 113558921 113558921 C T PPP1R3A Missense_Mutation p.R44Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 7 114066572 114066572 G C FOXP2 Missense_Mutation p.M2I 0.10 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-WS-AB45-01 7 116371755 116371755 C A MET Missense_Mutation p.R412S 0.09 tolerated(0.16) benign(0.421) TCGA-WS-AB45-01 7 116397828 116397828 G T MET Missense_Mutation p.S701I 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-WS-AB45-01 7 116955206 116955206 G A WNT2 Silent p.R169R 0.09 TCGA-WS-AB45-01 7 117432402 117432402 C T CTTNBP2 Missense_Mutation p.R283Q 0.15 tolerated(0.14) possibly_damaging(0.552) TCGA-WS-AB45-01 7 120969824 120969824 C T WNT16 Missense_Mutation p.T100I 0.15 tolerated(0.13) benign(0.001) TCGA-WS-AB45-01 7 121698853 121698853 G T PTPRZ1 Splice_Site p.X2177_splice 0.10 TCGA-WS-AB45-01 7 121717935 121717935 G A AASS Silent p.T873T 0.13 TCGA-WS-AB45-01 7 126698142 126698142 G A GRM8 Intron 0.16 TCGA-WS-AB45-01 7 127013759 127013759 T - ZNF800 Frame_Shift_Del p.K544Sfs*9 0.11 TCGA-WS-AB45-01 7 127235460 127235460 G A FSCN3 Missense_Mutation p.V82M 0.11 deleterious(0.03) possibly_damaging(0.563) TCGA-WS-AB45-01 7 127484387 127484387 C T SND1 Missense_Mutation p.T418M 0.12 deleterious(0.02) possibly_damaging(0.778) TCGA-WS-AB45-01 7 128444785 128444785 C T CCDC136 Missense_Mutation p.T251M 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-WS-AB45-01 7 128475604 128475604 G A FLNC Missense_Mutation p.A193T 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 7 128505591 128505591 C T ATP6V1F Missense_Mutation p.R135C 0.08 tolerated(0.08) benign(0.189) TCGA-WS-AB45-01 7 128517306 128517306 G A KCP RNA 0.11 TCGA-WS-AB45-01 7 128525296 128525296 G - KCP RNA 0.10 TCGA-WS-AB45-01 7 128527322 128527322 C T KCP RNA 0.17 TCGA-WS-AB45-01 7 128655089 128655089 G A TNPO3 Missense_Mutation p.R166C 0.11 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 7 130020953 130020953 G A CPA1 Missense_Mutation p.R27Q 0.14 deleterious(0.04) probably_damaging(1) TCGA-WS-AB45-01 7 130038734 130038734 A G CEP41 Nonstop_Mutation p.*374Qext*6 0.20 TCGA-WS-AB45-01 7 130353969 130353969 A G TSGA13 Missense_Mutation p.L238P 0.12 deleterious(0) possibly_damaging(0.883) TCGA-WS-AB45-01 7 130418259 130418259 C T KLF14 Missense_Mutation p.G201D 0.13 deleterious(0) benign(0.298) TCGA-WS-AB45-01 7 131195603 131195603 C - PODXL Frame_Shift_Del p.M231* 0.11 TCGA-WS-AB45-01 7 131866275 131866275 G T PLXNA4 Silent p.G1119G 0.10 TCGA-WS-AB45-01 7 131895722 131895722 C T PLXNA4 Missense_Mutation p.V760I 0.12 tolerated(1) possibly_damaging(0.718) TCGA-WS-AB45-01 7 131913212 131913212 G A PLXNA4 Missense_Mutation p.R541W 0.09 deleterious(0.02) possibly_damaging(0.906) TCGA-WS-AB45-01 7 132174138 132174138 G - PLXNA4 Frame_Shift_Del p.D428Efs*5 0.10 TCGA-WS-AB45-01 7 134617848 134617848 C T CALD1 Missense_Mutation p.R110C 0.12 deleterious(0.02) unknown(0) TCGA-WS-AB45-01 7 134632345 134632345 G A CALD1 Missense_Mutation p.R540H 0.14 deleterious(0) unknown(0) TCGA-WS-AB45-01 7 138603524 138603524 A T KIAA1549 Nonsense_Mutation p.L283* 0.12 TCGA-WS-AB45-01 7 138732554 138732554 G A ZC3HAV1 Missense_Mutation p.P832L 0.12 tolerated(0.21) probably_damaging(0.996) TCGA-WS-AB45-01 7 139208854 139208854 G A CLEC2L Missense_Mutation p.A61T 0.17 tolerated(0.06) benign(0.002) TCGA-WS-AB45-01 7 139257818 139257818 C T HIPK2 Missense_Mutation p.R1151Q 0.09 deleterious(0.04) benign(0.295) TCGA-WS-AB45-01 7 140373801 140373801 T C ADCK2 Missense_Mutation p.L224P 0.12 deleterious(0) probably_damaging(0.961) TCGA-WS-AB45-01 7 14188767 14188767 T G DGKB Missense_Mutation p.S802R 0.12 deleterious(0.01) benign(0.092) TCGA-WS-AB45-01 7 142626178 142626178 G A TRPV5 Silent p.S175S 0.12 TCGA-WS-AB45-01 7 142630545 142630545 A - TRPV5 Frame_Shift_Del p.L5Yfs*41 0.10 TCGA-WS-AB45-01 7 143002185 143002185 C T CASP2 3'UTR 0.07 TCGA-WS-AB45-01 7 143701924 143701924 G A OR6B1 Missense_Mutation p.V279I 0.10 tolerated(0.45) benign(0.036) TCGA-WS-AB45-01 7 144101769 144101769 C T NOBOX Silent p.P30P 0.11 TCGA-WS-AB45-01 7 146536949 146536949 G A CNTNAP2 Missense_Mutation p.D119N 0.14 deleterious(0) probably_damaging(0.991) TCGA-WS-AB45-01 7 148311281 148311281 A G C7orf33 Missense_Mutation p.M118V 0.10 deleterious_low_confidence(0) benign(0.043) TCGA-WS-AB45-01 7 1484421 1484422 - GG MICALL2 Frame_Shift_Ins p.G429Pfs*69 0.18 TCGA-WS-AB45-01 7 148767716 148767716 C A ZNF786 Missense_Mutation p.R716S 0.12 deleterious(0.01) possibly_damaging(0.642) TCGA-WS-AB45-01 7 148801385 148801385 G A ZNF425 Silent p.F526F 0.08 TCGA-WS-AB45-01 7 148802148 148802148 C T ZNF425 Missense_Mutation p.R272Q 0.17 tolerated(0.29) benign(0.124) TCGA-WS-AB45-01 7 148895829 148895829 G - ZNF282 Frame_Shift_Del p.E192Rfs*7 0.16 TCGA-WS-AB45-01 7 148921376 148921376 C T ZNF282 Silent p.C551C 0.09 TCGA-WS-AB45-01 7 148947554 148947554 G A ZNF212 Missense_Mutation p.R110Q 0.13 deleterious(0) probably_damaging(0.925) TCGA-WS-AB45-01 7 149489169 149489169 A G SSPO RNA 0.11 TCGA-WS-AB45-01 7 149499245 149499245 C T SSPO RNA 0.06 TCGA-WS-AB45-01 7 149505640 149505640 C T SSPO RNA 0.09 TCGA-WS-AB45-01 7 149508059 149508059 C - SSPO RNA 0.13 TCGA-WS-AB45-01 7 150035066 150035066 C T LRRC61 3'UTR 0.13 TCGA-WS-AB45-01 7 150069438 150069439 - C REPIN1 Frame_Shift_Ins p.S430Lfs*? 0.29 TCGA-WS-AB45-01 7 150094887 150094887 C T ZNF775 Missense_Mutation p.P440S 0.14 tolerated(0.41) benign(0.005) TCGA-WS-AB45-01 7 150174639 150174639 T - GIMAP8 Frame_Shift_Del p.F591Lfs*24 0.14 TCGA-WS-AB45-01 7 150417615 150417615 C T GIMAP1 Missense_Mutation p.R175C 0.12 tolerated(0.05) possibly_damaging(0.534) TCGA-WS-AB45-01 7 150695705 150695705 C T NOS3 Silent p.Y251Y 0.10 TCGA-WS-AB45-01 7 150707755 150707755 C T NOS3 Missense_Mutation p.P919L 0.12 deleterious(0.02) possibly_damaging(0.873) TCGA-WS-AB45-01 7 150713196 150713196 C A ATG9B Splice_Site p.X882_splice 0.17 TCGA-WS-AB45-01 7 150718283 150718283 T C ATG9B Missense_Mutation p.I319V 0.11 deleterious(0.03) probably_damaging(0.99) TCGA-WS-AB45-01 7 150752164 150752164 C T CDK5 Silent p.R200R 0.11 TCGA-WS-AB45-01 7 150778562 150778562 G A TMUB1 3'UTR 0.24 TCGA-WS-AB45-01 7 151071271 151071271 C T NUB1 Missense_Mutation p.T470M 0.20 tolerated(0.08) benign(0.019) TCGA-WS-AB45-01 7 151082230 151082230 C T WDR86 Missense_Mutation p.R269H 0.10 deleterious(0.04) benign(0.011) TCGA-WS-AB45-01 7 151864370 151864370 G A KMT2C Missense_Mutation p.A3204V 0.14 benign(0.4) TCGA-WS-AB45-01 7 151891101 151891101 G A KMT2C Silent p.H1551H 0.11 TCGA-WS-AB45-01 7 151945301 151945301 C T KMT2C Missense_Mutation p.E740K 0.07 benign(0.028) TCGA-WS-AB45-01 7 152132945 152132945 C T KMT2C 5'UTR 0.13 TCGA-WS-AB45-01 7 152132948 152132948 C T KMT2C 5'UTR 0.16 TCGA-WS-AB45-01 7 154746039 154746039 G A PAXIP1 Missense_Mutation p.T916M 0.15 deleterious(0.01) unknown(0) TCGA-WS-AB45-01 7 155250953 155250953 C - EN2 5'UTR 0.15 TCGA-WS-AB45-01 7 155604690 155604690 C T SHH Missense_Mutation p.A43T 0.11 tolerated(0.07) probably_damaging(0.971) TCGA-WS-AB45-01 7 156469082 156469082 G A RNF32 Intron 0.13 TCGA-WS-AB45-01 7 156746891 156746891 G A NOM1 Missense_Mutation p.A403T 0.11 tolerated(0.25) benign(0.032) TCGA-WS-AB45-01 7 157000567 157000567 A G UBE3C Missense_Mutation p.T583A 0.07 tolerated(0.26) benign(0.027) TCGA-WS-AB45-01 7 157023803 157023803 C T UBE3C Missense_Mutation p.H755Y 0.16 tolerated(0.09) benign(0.003) TCGA-WS-AB45-01 7 15725938 15725938 A G MEOX2 Silent p.H30H 0.10 TCGA-WS-AB45-01 7 157874057 157874057 T C PTPRN2 Silent p.P552P 0.15 TCGA-WS-AB45-01 7 1608938 1608938 G A PSMG3 Missense_Mutation p.T13M 0.18 tolerated(0.1) possibly_damaging(0.764) TCGA-WS-AB45-01 7 16815913 16815913 C T TSPAN13 Silent p.G47G 0.18 TCGA-WS-AB45-01 7 16840973 16840974 AT - AGR2 Frame_Shift_Del p.Y58* 0.12 TCGA-WS-AB45-01 7 1784377 1784377 C - ELFN1 Frame_Shift_Del p.Y51Tfs*115 0.13 TCGA-WS-AB45-01 7 17855871 17855872 - T SNX13 Frame_Shift_Ins p.T630Dfs*3 0.11 TCGA-WS-AB45-01 7 1785861 1785861 G A ELFN1 Silent p.R543R 0.10 TCGA-WS-AB45-01 7 17879601 17879601 A G SNX13 Silent p.G396G 0.12 TCGA-WS-AB45-01 7 17915375 17915375 C T SNX13 Missense_Mutation p.R160H 0.10 deleterious(0) benign(0.202) TCGA-WS-AB45-01 7 1855795 1855795 T C MAD1L1 Missense_Mutation p.I690V 0.08 tolerated(0.58) benign(0.401) TCGA-WS-AB45-01 7 18914179 18914179 C T HDAC9 Silent p.G921G 0.07 TCGA-WS-AB45-01 7 1976416 1976416 G A MAD1L1 Missense_Mutation p.R572C 0.09 deleterious(0) probably_damaging(0.969) TCGA-WS-AB45-01 7 19765217 19765217 G A TMEM196 Nonsense_Mutation p.R127* 0.12 TCGA-WS-AB45-01 7 21657352 21657352 C T DNAH11 Missense_Mutation p.A1409V 0.14 probably_damaging(0.933) TCGA-WS-AB45-01 7 21805142 21805142 G A DNAH11 Missense_Mutation p.A3020T 0.15 benign(0.003) TCGA-WS-AB45-01 7 22194212 22194212 G A RAPGEF5 Silent p.H396H 0.11 TCGA-WS-AB45-01 7 2255801 2255801 G A MAD1L1 Missense_Mutation p.A267V 0.12 tolerated(0.09) benign(0.081) TCGA-WS-AB45-01 7 2259009 2259009 G T MAD1L1 Nonsense_Mutation p.S185* 0.14 TCGA-WS-AB45-01 7 2419109 2419109 A G EIF3B Missense_Mutation p.I808V 0.18 tolerated(0.16) possibly_damaging(0.456) TCGA-WS-AB45-01 7 24324937 24324937 C T NPY Silent p.A26A 0.18 TCGA-WS-AB45-01 7 24745937 24745937 G T DFNA5 Missense_Mutation p.P350H 0.14 deleterious(0.02) benign(0.17) TCGA-WS-AB45-01 7 24870395 24870395 A - OSBPL3 Frame_Shift_Del p.S626Qfs*26 0.12 TCGA-WS-AB45-01 7 27135386 27135386 C T HOXA1 Missense_Mutation p.G49D 0.15 tolerated(0.07) benign(0.43) TCGA-WS-AB45-01 7 27147379 27147379 G - HOXA3 3'UTR 0.19 TCGA-WS-AB45-01 7 27282620 27282620 C T EVX1 5'UTR 0.15 TCGA-WS-AB45-01 7 2742463 2742463 G A AMZ1 Missense_Mutation p.A138T 0.15 tolerated(0.26) benign(0.001) TCGA-WS-AB45-01 7 27880446 27880446 C T JAZF1 Silent p.S142S 0.11 TCGA-WS-AB45-01 7 2802395 2802395 G A GNA12 Intron 0.14 TCGA-WS-AB45-01 7 28996358 28996358 G A AC005013.5 5'Flank 0.21 TCGA-WS-AB45-01 7 2953020 2953020 G A CARD11 Missense_Mutation p.R974C 0.11 deleterious(0.01) possibly_damaging(0.901) TCGA-WS-AB45-01 7 29943998 29943998 T C WIPF3 Intron 0.14 TCGA-WS-AB45-01 7 30890101 30890101 C T FAM188B Missense_Mutation p.R493C 0.11 deleterious(0.03) benign(0.022) TCGA-WS-AB45-01 7 30961799 30961799 C - AQP1 Frame_Shift_Del p.A171Pfs*6 0.16 TCGA-WS-AB45-01 7 32110064 32110064 C T PDE1C Intron 0.11 TCGA-WS-AB45-01 7 33192424 33192424 G A BBS9 Missense_Mutation p.R75Q 0.10 tolerated(0.64) benign(0.015) TCGA-WS-AB45-01 7 34698031 34698031 G A NPSR1 Missense_Mutation p.A3T 0.11 tolerated_low_confidence(0.12) benign(0.318) TCGA-WS-AB45-01 7 35244113 35244113 C A TBX20 Missense_Mutation p.L324F 0.09 tolerated(0.39) possibly_damaging(0.731) TCGA-WS-AB45-01 7 36373756 36373756 G A KIAA0895 Nonsense_Mutation p.R339* 0.14 TCGA-WS-AB45-01 7 37949276 37949276 C G SFRP4 Missense_Mutation p.M266I 0.11 deleterious(0.02) probably_damaging(0.977) TCGA-WS-AB45-01 7 40041486 40041486 C T CDK13 Missense_Mutation p.R737C 0.15 deleterious(0) probably_damaging(0.997) TCGA-WS-AB45-01 7 40127921 40127921 G A CDK13 Missense_Mutation p.V1076M 0.13 tolerated(0.12) possibly_damaging(0.621) TCGA-WS-AB45-01 7 40277263 40277263 C A SUGCT Silent p.R179R 0.16 TCGA-WS-AB45-01 7 4116752 4116752 G A SDK1 Missense_Mutation p.V1045M 0.13 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 7 4153050 4153050 C A SDK1 Silent p.T1188T 0.09 TCGA-WS-AB45-01 7 43484877 43484877 C A HECW1 Nonsense_Mutation p.C702* 0.13 TCGA-WS-AB45-01 7 43484982 43484982 C T HECW1 Silent p.D737D 0.11 TCGA-WS-AB45-01 7 43917500 43917500 G - URGCP Frame_Shift_Del p.P521Lfs*8 0.17 TCGA-WS-AB45-01 7 44148924 44148924 G A AEBP1 Silent p.T378T 0.09 TCGA-WS-AB45-01 7 44151469 44151469 C T AEBP1 Silent p.R619R 0.14 TCGA-WS-AB45-01 7 44152861 44152861 G A AEBP1 Missense_Mutation p.G907D 0.12 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 7 44185175 44185175 G A GCK Missense_Mutation p.R393C 0.11 deleterious(0) probably_damaging(0.965) TCGA-WS-AB45-01 7 44573022 44573022 G A NPC1L1 Intron 0.15 TCGA-WS-AB45-01 7 44796746 44796746 C T ZMIZ2 Silent p.T122T 0.14 TCGA-WS-AB45-01 7 45125247 45125247 A - NACAD Frame_Shift_Del p.S178Pfs*128 0.13 TCGA-WS-AB45-01 7 45144215 45144215 G A TBRG4 Missense_Mutation p.R277W 0.20 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 7 47336807 47336807 G A TNS3 Silent p.I1183I 0.14 TCGA-WS-AB45-01 7 48092305 48092305 A - C7orf57 Frame_Shift_Del p.N207Tfs*92 0.10 TCGA-WS-AB45-01 7 4825293 4825293 C T AP5Z1 Silent p.L370L 0.07 TCGA-WS-AB45-01 7 4830418 4830418 C T AP5Z1 Missense_Mutation p.R685C 0.13 deleterious(0.01) probably_damaging(0.975) TCGA-WS-AB45-01 7 4856955 4856955 G A RADIL Missense_Mutation p.T548M 0.15 deleterious(0) probably_damaging(0.968) TCGA-WS-AB45-01 7 4965103 4965103 C T MMD2 Silent p.A36A 0.14 TCGA-WS-AB45-01 7 51098544 51098544 C T COBL Missense_Mutation p.R490H 0.09 tolerated(0.37) benign(0) TCGA-WS-AB45-01 7 5338669 5338669 A G SLC29A4 Silent p.P311P 0.05 TCGA-WS-AB45-01 7 5396704 5396704 C T TNRC18 Silent p.A1679A 0.13 TCGA-WS-AB45-01 7 5401284 5401284 G A TNRC18 Silent p.H1534H 0.12 TCGA-WS-AB45-01 7 55466205 55466205 C T LANCL2 Missense_Mutation p.R138W 0.11 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 7 55493057 55493057 C T LANCL2 Silent p.N373N 0.12 TCGA-WS-AB45-01 7 55990881 55990881 C T MRPS17 Silent p.A25A 0.14 TCGA-WS-AB45-01 7 56007577 56007577 G A ZNF713 Missense_Mutation p.G391R 0.14 deleterious(0.04) possibly_damaging(0.822) TCGA-WS-AB45-01 7 56148889 56148889 C T PHKG1 Missense_Mutation p.R373Q 0.17 deleterious(0.01) benign(0.207) TCGA-WS-AB45-01 7 5963564 5963564 A - CCZ1 Frame_Shift_Del p.N457Mfs*4 0.11 TCGA-WS-AB45-01 7 6017330 6017330 G A PMS2 Silent p.F778F 0.09 TCGA-WS-AB45-01 7 6062938 6062938 G A AIMP2 Silent p.P193P 0.12 TCGA-WS-AB45-01 7 6084228 6084228 G A EIF2AK1 Missense_Mutation p.A232V 0.10 deleterious(0) probably_damaging(0.975) TCGA-WS-AB45-01 7 6094177 6094177 G A EIF2AK1 Silent p.L93L 0.17 TCGA-WS-AB45-01 7 6210515 6210515 G A CYTH3 Silent p.I219I 0.07 TCGA-WS-AB45-01 7 63808868 63808868 G A ZNF736 Silent p.A209A 0.10 TCGA-WS-AB45-01 7 63982695 63982695 A G ZNF680 Missense_Mutation p.L146S 0.08 tolerated(0.07) possibly_damaging(0.894) TCGA-WS-AB45-01 7 64292955 64292955 A C ZNF138 3'Flank 0.26 TCGA-WS-AB45-01 7 65441102 65441102 G A GUSB Missense_Mutation p.A271V 0.21 tolerated(0.12) benign(0.224) TCGA-WS-AB45-01 7 66270322 66270322 C T KCTD7 Missense_Mutation p.T339M 0.15 deleterious(0) possibly_damaging(0.897) TCGA-WS-AB45-01 7 6639721 6639721 G A C7orf26 Missense_Mutation p.R281K 0.12 tolerated(0.48) benign(0) TCGA-WS-AB45-01 7 66416067 66416067 C T TMEM248 Missense_Mutation p.A242V 0.08 tolerated(0.2) benign(0.301) TCGA-WS-AB45-01 7 6647619 6647619 G A C7orf26 Missense_Mutation p.V393M 0.11 tolerated_low_confidence(0.09) possibly_damaging(0.791) TCGA-WS-AB45-01 7 6791127 6791127 A - RSPH10B2 5'Flank 0.30 TCGA-WS-AB45-01 7 6820986 6820986 C T RSPH10B2 Missense_Mutation p.T546M 0.17 deleterious(0) probably_damaging(0.945) TCGA-WS-AB45-01 7 6836366 6836366 C T RSPH10B2 Missense_Mutation p.R801W 0.14 deleterious(0.03) possibly_damaging(0.846) TCGA-WS-AB45-01 7 6836383 6836383 C T RSPH10B2 Silent p.D806D 0.14 TCGA-WS-AB45-01 7 72413584 72413584 G A POM121 Missense_Mutation p.V753M 0.11 tolerated(0.1) possibly_damaging(0.468) TCGA-WS-AB45-01 7 72722442 72722442 G A NSUN5 Missense_Mutation p.P68S 0.12 tolerated(0.46) possibly_damaging(0.521) TCGA-WS-AB45-01 7 72861617 72861619 TCT - BAZ1B In_Frame_Del p.E1273del 0.11 TCGA-WS-AB45-01 7 73118101 73118101 G A STX1A Missense_Mutation p.A175V 0.15 deleterious(0) benign(0.002) TCGA-WS-AB45-01 7 73246268 73246268 G T CLDN4 3'UTR 0.12 TCGA-WS-AB45-01 7 73526026 73526026 G A LIMK1 Missense_Mutation p.A445T 0.11 deleterious(0.01) possibly_damaging(0.815) TCGA-WS-AB45-01 7 73768242 73768242 C T CLIP2 Silent p.Y237Y 0.18 TCGA-WS-AB45-01 7 73959099 73959099 G A GTF2IRD1 Missense_Mutation p.E577K 0.10 tolerated(0.06) benign(0.422) TCGA-WS-AB45-01 7 75185333 75185333 T G HIP1 Silent p.T608T 0.09 TCGA-WS-AB45-01 7 75511205 75511205 C T RHBDD2 Silent p.G79G 0.16 TCGA-WS-AB45-01 7 75864359 75864359 G T SRRM3 5'UTR 0.10 TCGA-WS-AB45-01 7 75915184 75915184 C - SRRM3 3'UTR 0.12 TCGA-WS-AB45-01 7 76940665 76940665 G A GSAP 3'UTR 0.17 TCGA-WS-AB45-01 7 80108305 80108305 G A GNAT3 Nonsense_Mutation p.R105* 0.15 TCGA-WS-AB45-01 7 81392087 81392088 - T HGF Frame_Shift_Ins p.V64Sfs*9 0.13 TCGA-WS-AB45-01 7 82389966 82389966 G A PCLO Missense_Mutation p.H5093Y 0.15 unknown(0) TCGA-WS-AB45-01 7 82997317 82997317 C T SEMA3E Missense_Mutation p.G638D 0.07 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 7 87179322 87179322 G A ABCB1 Missense_Mutation p.R467W 0.10 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 7 87908889 87908889 C T STEAP4 Missense_Mutation p.G402S 0.09 deleterious(0.02) probably_damaging(0.969) TCGA-WS-AB45-01 7 91724467 91724467 C T AKAP9 Missense_Mutation p.R3237W 0.09 probably_damaging(0.96) TCGA-WS-AB45-01 7 91924275 91924276 - A ANKIB1 5'UTR 0.09 TCGA-WS-AB45-01 7 92015957 92015957 G T ANKIB1 Missense_Mutation p.E584D 0.06 deleterious(0.04) probably_damaging(0.991) TCGA-WS-AB45-01 7 92734352 92734352 C T SAMD9 Silent p.T353T 0.15 TCGA-WS-AB45-01 7 92735257 92735258 - T SAMD9 Frame_Shift_Ins p.E52Rfs*5 0.09 TCGA-WS-AB45-01 7 92760745 92760745 T C SAMD9L Missense_Mutation p.K1514E 0.14 tolerated(0.15) benign(0.045) TCGA-WS-AB45-01 7 930668 930668 C T GET4 Silent p.S190S 0.18 TCGA-WS-AB45-01 7 94539589 94539589 G - PPP1R9A Frame_Shift_Del p.R57Gfs*44 0.10 TCGA-WS-AB45-01 7 95225598 95225598 G A PDK4 Missense_Mutation p.A3V 0.06 tolerated(0.3) benign(0.002) TCGA-WS-AB45-01 7 95750463 95750463 G A SLC25A13 3'UTR 0.09 TCGA-WS-AB45-01 7 97922108 97922108 G A BRI3 3'Flank 0.22 TCGA-WS-AB45-01 7 98445719 98445719 A G TMEM130 Missense_Mutation p.L423P 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 7 98550858 98550858 G A TRRAP Silent p.T1837T 0.16 TCGA-WS-AB45-01 7 98563362 98563362 G A TRRAP Silent p.T2333T 0.13 TCGA-WS-AB45-01 7 98573780 98573780 G A TRRAP Silent p.A2609A 0.07 TCGA-WS-AB45-01 7 99047936 99047936 C T CPSF4 Silent p.I115I 0.15 TCGA-WS-AB45-01 7 99096411 99096411 G A ZNF394 Missense_Mutation p.R171C 0.11 tolerated(0.19) possibly_damaging(0.679) TCGA-WS-AB45-01 7 99123898 99123898 G A ZKSCAN5 Missense_Mutation p.R412Q 0.25 tolerated(0.09) probably_damaging(0.99) TCGA-WS-AB45-01 7 99129743 99129743 T C ZKSCAN5 Silent p.G797G 0.15 TCGA-WS-AB45-01 7 99144812 99144812 C T FAM200A Missense_Mutation p.E407K 0.12 tolerated(0.1) benign(0.147) TCGA-WS-AB45-01 7 99308391 99308391 T - CYP3A7 Frame_Shift_Del p.V331Cfs*30 0.10 TCGA-WS-AB45-01 7 99490259 99490259 C T TRIM4 Missense_Mutation p.A344T 0.08 tolerated(0.15) benign(0.03) TCGA-WS-AB45-01 7 99695355 99695355 G A MCM7 Silent p.Y333Y 0.12 TCGA-WS-AB45-01 7 99710428 99710428 G A TAF6 Silent p.D226D 0.12 TCGA-WS-AB45-01 7 99712010 99712010 G A TAF6 Intron 0.25 TCGA-WS-AB45-01 7 99753345 99753345 G A C7orf43 Silent p.S448S 0.11 TCGA-WS-AB45-01 7 99764371 99764371 C T GAL3ST4 Silent p.P61P 0.14 TCGA-WS-AB45-01 7 99780385 99780385 C T STAG3 Missense_Mutation p.R87C 0.22 tolerated(0.1) benign(0.006) TCGA-WS-AB45-01 7 99818640 99818640 C - PVRIG Frame_Shift_Del p.H251Mfs*73 0.09 TCGA-WS-AB45-01 7 99917283 99917283 G A SPDYE3 Missense_Mutation p.R481H 0.16 tolerated_low_confidence(0.09) benign(0.014) TCGA-WS-AB45-01 8 100205242 100205242 C T VPS13B Silent p.S824S 0.15 TCGA-WS-AB45-01 8 100523629 100523629 C T VPS13B Missense_Mutation p.P1533S 0.12 deleterious(0.03) probably_damaging(0.968) TCGA-WS-AB45-01 8 100831011 100831011 G T VPS13B Missense_Mutation p.R2864M 0.13 deleterious(0.01) possibly_damaging(0.507) TCGA-WS-AB45-01 8 101020778 101020778 A G RGS22 Missense_Mutation p.V729A 0.15 deleterious(0) benign(0.422) TCGA-WS-AB45-01 8 101153996 101153996 G A FBXO43 Silent p.F162F 0.11 TCGA-WS-AB45-01 8 101542087 101542087 G A ANKRD46 Intron 0.14 TCGA-WS-AB45-01 8 101589268 101589268 T - SNX31 Frame_Shift_Del p.K402Nfs*24 0.08 TCGA-WS-AB45-01 8 103354873 103354873 C T UBR5 Missense_Mutation p.R309H 0.10 deleterious(0.01) probably_damaging(0.926) TCGA-WS-AB45-01 8 104427343 104427343 C T DCAF13 Missense_Mutation p.A42V 0.11 possibly_damaging(0.682) TCGA-WS-AB45-01 8 10480564 10480564 G A RP1L1 Missense_Mutation p.R50C 0.12 probably_damaging(0.996) TCGA-WS-AB45-01 8 10555435 10555435 C T C8orf74 Missense_Mutation p.R190C 0.09 tolerated(0.21) benign(0.006) TCGA-WS-AB45-01 8 110257651 110257651 G T NUDCD1 Silent p.P453P 0.14 TCGA-WS-AB45-01 8 110355849 110355849 T - ENY2 3'UTR 0.09 TCGA-WS-AB45-01 8 110418562 110418562 A G PKHD1L1 Splice_Site p.X557_splice 0.16 TCGA-WS-AB45-01 8 11180308 11180308 C T MTMR9 3'UTR 0.15 TCGA-WS-AB45-01 8 113585787 113585787 G A CSMD3 Silent p.L1329L 0.13 TCGA-WS-AB45-01 8 113697870 113697870 C T CSMD3 Nonsense_Mutation p.W749* 0.13 TCGA-WS-AB45-01 8 114186077 114186077 C T CSMD3 Missense_Mutation p.D195N 0.07 tolerated(1) possibly_damaging(0.862) TCGA-WS-AB45-01 8 116426171 116426171 G T TRPS1 3'UTR 0.07 TCGA-WS-AB45-01 8 116426306 116426306 C A TRPS1 Missense_Mutation p.R1277M 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WS-AB45-01 8 116631983 116631983 C T TRPS1 Silent p.P114P 0.07 TCGA-WS-AB45-01 8 119122820 119122820 G T EXT1 Missense_Mutation p.L156M 0.14 deleterious(0.03) probably_damaging(1) TCGA-WS-AB45-01 8 121432178 121432178 T C MRPL13 Missense_Mutation p.I103V 0.07 tolerated(0.4) benign(0.213) TCGA-WS-AB45-01 8 121483156 121483156 A - MTBP Frame_Shift_Del p.K383Sfs*12 0.09 TCGA-WS-AB45-01 8 124428990 124428990 C A WDYHV1 5'UTR 0.11 TCGA-WS-AB45-01 8 124798737 124798737 G A FAM91A1 Missense_Mutation p.S322N 0.13 tolerated(0.41) benign(0.016) TCGA-WS-AB45-01 8 125072865 125072865 G A FER1L6 Missense_Mutation p.C1021Y 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 8 12580690 12580690 G A LONRF1 Missense_Mutation p.S746L 0.11 deleterious(0.01) possibly_damaging(0.876) TCGA-WS-AB45-01 8 126056234 126056234 C T KIAA0196 Missense_Mutation p.A924T 0.11 tolerated(0.57) benign(0.004) TCGA-WS-AB45-01 8 128428898 128428898 G A POU5F1B Missense_Mutation p.A263T 0.15 deleterious(0.01) possibly_damaging(0.599) TCGA-WS-AB45-01 8 133112343 133112343 C - HHLA1 Frame_Shift_Del p.V96Wfs*21 0.11 TCGA-WS-AB45-01 8 133898790 133898790 C T TG Silent p.S391S 0.14 TCGA-WS-AB45-01 8 133898980 133898980 C T TG Missense_Mutation p.R455C 0.16 tolerated(0.08) possibly_damaging(0.513) TCGA-WS-AB45-01 8 135614683 135614683 C T ZFAT Missense_Mutation p.G427R 0.28 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 8 139153536 139153536 C T FAM135B Missense_Mutation p.R1232Q 0.12 deleterious(0.02) possibly_damaging(0.871) TCGA-WS-AB45-01 8 13948099 13948099 G A SGCZ Silent p.G264G 0.19 TCGA-WS-AB45-01 8 141559317 141559317 G A AGO2 Missense_Mutation p.A495V 0.15 tolerated(0.1) benign(0.344) TCGA-WS-AB45-01 8 141711044 141711044 C T PTK2 Silent p.Q815Q 0.16 TCGA-WS-AB45-01 8 141889713 141889713 G - PTK2 Frame_Shift_Del p.D73Efs*5 0.09 TCGA-WS-AB45-01 8 142146805 142146805 G C DENND3 Silent p.P20P 0.21 TCGA-WS-AB45-01 8 142228264 142228264 G A SLC45A4 Missense_Mutation p.T441I 0.21 tolerated(0.06) benign(0.331) TCGA-WS-AB45-01 8 142367102 142367102 C T GPR20 Missense_Mutation p.V308I 0.25 tolerated(0.09) possibly_damaging(0.475) TCGA-WS-AB45-01 8 142500270 142500270 C T MROH5 3'Flank 0.15 TCGA-WS-AB45-01 8 143747165 143747165 C T JRK RNA 0.20 TCGA-WS-AB45-01 8 143856744 143856744 G A LYNX1 Intron 0.13 TCGA-WS-AB45-01 8 144378633 144378633 A G ZNF696 Missense_Mutation p.N263S 0.12 tolerated(0.18) benign(0.27) TCGA-WS-AB45-01 8 144379012 144379012 G A ZNF696 3'UTR 0.17 TCGA-WS-AB45-01 8 144392367 144392367 C T TOP1MT Missense_Mutation p.R525Q 0.19 deleterious(0.04) benign(0.012) TCGA-WS-AB45-01 8 144523242 144523242 C - ZC3H3 Frame_Shift_Del p.A786Rfs*113 0.14 TCGA-WS-AB45-01 8 144649976 144649976 C T MROH6 Missense_Mutation p.R616Q 0.16 tolerated(0.08) possibly_damaging(0.515) TCGA-WS-AB45-01 8 144652176 144652176 C T MROH6 Missense_Mutation p.R368Q 0.11 tolerated(0.31) benign(0.027) TCGA-WS-AB45-01 8 144681844 144681844 G A TIGD5 Missense_Mutation p.A591T 0.10 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 8 144732639 144732639 C T ZNF623 Silent p.R199R 0.11 TCGA-WS-AB45-01 8 144776302 144776302 G A ZNF707 Missense_Mutation p.A240T 0.16 deleterious(0) probably_damaging(0.91) TCGA-WS-AB45-01 8 144789863 144789863 C T CCDC166 Silent p.Q139Q 0.18 TCGA-WS-AB45-01 8 144810460 144810460 C T FAM83H Missense_Mutation p.A391T 0.12 tolerated(0.43) benign(0.054) TCGA-WS-AB45-01 8 144887545 144887545 C - SCRIB Frame_Shift_Del p.A803Pfs*121 0.15 TCGA-WS-AB45-01 8 144898680 144898680 G T PUF60 3'UTR 0.09 TCGA-WS-AB45-01 8 144899624 144899624 C T PUF60 Missense_Mutation p.G341R 0.10 tolerated(0.06) possibly_damaging(0.775) TCGA-WS-AB45-01 8 144995162 144995162 G A PLEC Missense_Mutation p.R3080W 0.17 probably_damaging(0.993) TCGA-WS-AB45-01 8 144995804 144995804 G T PLEC Missense_Mutation p.L2866M 0.05 probably_damaging(1) TCGA-WS-AB45-01 8 144996903 144996903 G A PLEC Silent p.R2535R 0.11 TCGA-WS-AB45-01 8 144999629 144999629 G A PLEC Nonsense_Mutation p.R1627* 0.15 TCGA-WS-AB45-01 8 145005812 145005812 G A PLEC Missense_Mutation p.R869W 0.15 unknown(0) TCGA-WS-AB45-01 8 145006393 145006393 G A PLEC Missense_Mutation p.R800W 0.08 unknown(0) TCGA-WS-AB45-01 8 145007198 145007198 T C PLEC Silent p.A637A 0.09 TCGA-WS-AB45-01 8 145024760 145024760 G - PLEC Frame_Shift_Del p.H39Mfs*69 0.13 TCGA-WS-AB45-01 8 145151522 145151522 C T CYC1 Missense_Mutation p.T216M 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 8 145151558 145151558 G A CYC1 Missense_Mutation p.R228Q 0.18 tolerated(0.25) benign(0.006) TCGA-WS-AB45-01 8 145154045 145154045 G - SHARPIN Frame_Shift_Del p.P329Hfs*83 0.09 TCGA-WS-AB45-01 8 145557624 145557624 C T SCRT1 Silent p.P90P 0.15 TCGA-WS-AB45-01 8 145581372 145581372 G A FBXL6 Missense_Mutation p.S164F 0.18 tolerated(0.78) benign(0) TCGA-WS-AB45-01 8 145584608 145584609 - C SLC52A2 Frame_Shift_Ins p.T427Dfs*18 0.10 TCGA-WS-AB45-01 8 145619158 145619158 C - CPSF1 Frame_Shift_Del p.A1319Pfs*42 0.09 TCGA-WS-AB45-01 8 145659043 145659043 G A TONSL Missense_Mutation p.R1163C 0.10 deleterious(0.01) possibly_damaging(0.847) TCGA-WS-AB45-01 8 145675870 145675870 G A CYHR1 Silent p.N327N 0.15 TCGA-WS-AB45-01 8 145675924 145675924 G A CYHR1 Silent p.D309D 0.13 TCGA-WS-AB45-01 8 145694135 145694135 G A KIFC2 Missense_Mutation p.R344H 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-WS-AB45-01 8 145738978 145738978 G A RECQL4 Missense_Mutation p.A726V 0.16 tolerated(0.16) benign(0.008) TCGA-WS-AB45-01 8 145740393 145740393 G A RECQL4 Missense_Mutation p.A516V 0.14 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 8 145754251 145754251 C A C8orf82 Missense_Mutation p.R17L 0.10 tolerated(0.71) benign(0.001) TCGA-WS-AB45-01 8 146032657 146032657 G - ZNF517 Frame_Shift_Del p.C121Afs*105 0.13 TCGA-WS-AB45-01 8 146107479 146107479 C T ZNF250 Silent p.T368T 0.16 TCGA-WS-AB45-01 8 146157813 146157813 G A ZNF16 Silent p.V120V 0.15 TCGA-WS-AB45-01 8 146171504 146171504 C T ZNF16 Missense_Mutation p.R30H 0.18 tolerated_low_confidence(0.23) benign(0.027) TCGA-WS-AB45-01 8 1626445 1626445 G T DLGAP2 Missense_Mutation p.G705V 0.11 tolerated(0.11) probably_damaging(1) TCGA-WS-AB45-01 8 16942819 16942819 T - MICU3 Frame_Shift_Del p.L258Wfs*57 0.09 TCGA-WS-AB45-01 8 17814267 17814267 G A PCM1 Missense_Mutation p.E543K 0.14 deleterious(0.04) possibly_damaging(0.462) TCGA-WS-AB45-01 8 17823605 17823605 C T PCM1 Missense_Mutation p.R985C 0.11 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 8 1851626 1851626 A G ARHGEF10 Intron 0.06 TCGA-WS-AB45-01 8 1953729 1953729 C T KBTBD11 3'UTR 0.18 TCGA-WS-AB45-01 8 2005831 2005831 G A MYOM2 Missense_Mutation p.V165I 0.11 tolerated(0.08) benign(0.129) TCGA-WS-AB45-01 8 20112459 20112459 A G LZTS1 Silent p.H78H 0.11 TCGA-WS-AB45-01 8 21956802 21956802 C T FAM160B2 Missense_Mutation p.A361V 0.11 deleterious(0.02) possibly_damaging(0.905) TCGA-WS-AB45-01 8 21958404 21958404 T C FAM160B2 Missense_Mutation p.F513L 0.12 tolerated(0.7) benign(0.003) TCGA-WS-AB45-01 8 22438171 22438172 - G PDLIM2 Frame_Shift_Ins p.R271Qfs*11 0.11 TCGA-WS-AB45-01 8 22464524 22464524 C T CCAR2 Missense_Mutation p.T115M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-WS-AB45-01 8 22472975 22472975 C - CCAR2 Frame_Shift_Del p.R417Gfs*89 0.19 TCGA-WS-AB45-01 8 25136109 25136109 C T DOCK5 Silent p.G83G 0.11 TCGA-WS-AB45-01 8 25261108 25261108 C T DOCK5 Missense_Mutation p.T1654M 0.15 deleterious(0.03) benign(0.294) TCGA-WS-AB45-01 8 25298112 25298112 G A KCTD9 Missense_Mutation p.R98W 0.12 deleterious(0) probably_damaging(0.912) TCGA-WS-AB45-01 8 26366012 26366012 C - PNMA2 Frame_Shift_Del p.G87Vfs*5 0.12 TCGA-WS-AB45-01 8 26721662 26721662 G A ADRA1A Silent p.G275G 0.16 TCGA-WS-AB45-01 8 27145048 27145048 G A TRIM35 3'UTR 0.13 TCGA-WS-AB45-01 8 27297825 27297825 G A PTK2B Missense_Mutation p.G636R 0.18 tolerated(0.08) benign(0.023) TCGA-WS-AB45-01 8 28573798 28573798 C T EXTL3 Silent p.C74C 0.11 TCGA-WS-AB45-01 8 28974463 28974463 G A KIF13B Missense_Mutation p.T1241M 0.10 deleterious(0) probably_damaging(0.947) TCGA-WS-AB45-01 8 28974485 28974485 A G KIF13B Missense_Mutation p.C1234R 0.11 tolerated(0.07) probably_damaging(0.937) TCGA-WS-AB45-01 8 30700813 30700813 T - TEX15 Frame_Shift_Del p.K1907Nfs*14 0.09 TCGA-WS-AB45-01 8 30703775 30703775 T G TEX15 Missense_Mutation p.K920T 0.13 deleterious(0.04) possibly_damaging(0.866) TCGA-WS-AB45-01 8 37654957 37654957 C T GPR124 Silent p.G57G 0.15 TCGA-WS-AB45-01 8 37691605 37691605 G - GPR124 Frame_Shift_Del p.A525Pfs*12 0.08 TCGA-WS-AB45-01 8 37698291 37698291 G A GPR124 Missense_Mutation p.A891T 0.18 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 8 37698810 37698810 T - GPR124 Frame_Shift_Del p.L985Pfs*2 0.10 TCGA-WS-AB45-01 8 37702320 37702320 T C BRF2 Silent p.T316T 0.12 TCGA-WS-AB45-01 8 37729118 37729118 C A RAB11FIP1 Missense_Mutation p.G1068C 0.12 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-WS-AB45-01 8 38021137 38021137 A G LSM1 3'UTR 0.12 TCGA-WS-AB45-01 8 38109543 38109543 G A DDHD2 Silent p.G486G 0.07 TCGA-WS-AB45-01 8 38840074 38840074 C A HTRA4 Missense_Mutation p.P391H 0.15 deleterious(0.01) possibly_damaging(0.785) TCGA-WS-AB45-01 8 41472551 41472551 A G AGPAT6 Missense_Mutation p.Y346C 0.19 deleterious(0) probably_damaging(0.937) TCGA-WS-AB45-01 8 41478552 41478552 G A AGPAT6 3'UTR 0.13 TCGA-WS-AB45-01 8 41519421 41519421 G A ANK1 Silent p.S1880S 0.17 TCGA-WS-AB45-01 8 42012421 42012421 G A AP3M2 Silent p.T72T 0.08 TCGA-WS-AB45-01 8 42620210 42620210 C T CHRNA6 Missense_Mutation p.V73M 0.11 deleterious(0.01) possibly_damaging(0.882) TCGA-WS-AB45-01 8 42873571 42873571 C T HOOK3 Missense_Mutation p.A696V 0.10 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 8 48749808 48749808 T C PRKDC Missense_Mutation p.M2575V 0.20 benign(0.005) TCGA-WS-AB45-01 8 48846567 48846567 G A PRKDC Silent p.Y527Y 0.07 TCGA-WS-AB45-01 8 49647765 49647765 G A EFCAB1 5'UTR 0.12 TCGA-WS-AB45-01 8 52366191 52366191 C T PXDNL Silent p.T379T 0.15 TCGA-WS-AB45-01 8 53044681 53044681 G A ST18 Missense_Mutation p.R835C 0.21 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 8 53477813 53477813 G A FAM150A Missense_Mutation p.R2W 0.08 tolerated_low_confidence(0.18) unknown(0) TCGA-WS-AB45-01 8 54792097 54792097 C - RGS20 Frame_Shift_Del p.H151Ifs*3 0.09 TCGA-WS-AB45-01 8 54852233 54852233 G A RGS20 Missense_Mutation p.R203H 0.10 deleterious(0.05) benign(0.057) TCGA-WS-AB45-01 8 56015680 56015680 C T XKR4 Missense_Mutation p.T211M 0.17 deleterious(0.02) probably_damaging(0.947) TCGA-WS-AB45-01 8 56922685 56922685 G A LYN 3'UTR 0.14 TCGA-WS-AB45-01 8 57302815 57302815 T C SDR16C6P Splice_Site 0.15 TCGA-WS-AB45-01 8 59750724 59750724 C A TOX Missense_Mutation p.K280N 0.09 deleterious(0) probably_damaging(0.994) TCGA-WS-AB45-01 8 65494237 65494237 C T BHLHE22 Missense_Mutation p.A297V 0.10 deleterious(0.01) possibly_damaging(0.734) TCGA-WS-AB45-01 8 65494520 65494520 A G BHLHE22 3'UTR 0.12 TCGA-WS-AB45-01 8 6588328 6588328 A G AGPAT5 Missense_Mutation p.Y129C 0.19 deleterious(0) possibly_damaging(0.841) TCGA-WS-AB45-01 8 67341501 67341501 C - RRS1 Frame_Shift_Del p.P47Rfs*42 0.14 TCGA-WS-AB45-01 8 67357637 67357637 C A ADHFE1 Missense_Mutation p.P180T 0.12 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 8 6794369 6794369 C T DEFA4 Missense_Mutation p.R18Q 0.11 tolerated(1) unknown(0) TCGA-WS-AB45-01 8 68115431 68115431 C T ARFGEF1 Missense_Mutation p.R1672H 0.13 tolerated(0.13) possibly_damaging(0.629) TCGA-WS-AB45-01 8 68130139 68130139 C T ARFGEF1 Silent p.A1497A 0.12 TCGA-WS-AB45-01 8 69728144 69728144 G A C8orf34 Missense_Mutation p.V525I 0.11 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-WS-AB45-01 8 72756093 72756093 C T MSC Silent p.S107S 0.13 TCGA-WS-AB45-01 8 72964851 72964851 C T TRPA1 Silent p.T598T 0.11 TCGA-WS-AB45-01 8 74858894 74858894 G A TCEB1 Silent p.L104L 0.12 TCGA-WS-AB45-01 8 77617479 77617479 G A ZFHX4 Missense_Mutation p.A386T 0.11 benign(0.004) TCGA-WS-AB45-01 8 77764309 77764309 T - ZFHX4 Frame_Shift_Del p.L1719Cfs*6 0.10 TCGA-WS-AB45-01 8 79650865 79650865 A G IL7 Silent p.G78G 0.12 TCGA-WS-AB45-01 8 86124438 86124438 C T E2F5 Silent p.D310D 0.20 TCGA-WS-AB45-01 8 87060926 87060926 C T PSKH2 Missense_Mutation p.R308H 0.11 deleterious(0.04) possibly_damaging(0.843) TCGA-WS-AB45-01 8 87447712 87447712 C T WWP1 Missense_Mutation p.R545C 0.15 deleterious(0) possibly_damaging(0.628) TCGA-WS-AB45-01 8 87491199 87491201 TTC - RMDN1 In_Frame_Del p.R227del 0.09 TCGA-WS-AB45-01 8 88365969 88365969 A - CNBD1 Frame_Shift_Del p.E422Kfs*25 0.10 TCGA-WS-AB45-01 8 88885887 88885887 G A DCAF4L2 Nonsense_Mutation p.R105* 0.20 TCGA-WS-AB45-01 8 89081505 89081506 TT - MMP16 Intron 0.15 TCGA-WS-AB45-01 8 93074837 93074837 C T RUNX1T1 Intron 0.14 TCGA-WS-AB45-01 8 94712787 94712787 G A FAM92A1 5'UTR 0.10 TCGA-WS-AB45-01 8 94935737 94935737 C T PDP1 Missense_Mutation p.R509C 0.10 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 8 95952124 95952124 C T TP53INP1 Missense_Mutation p.R146H 0.10 tolerated(0.1) benign(0.26) TCGA-WS-AB45-01 8 9605637 9605637 C T TNKS Missense_Mutation p.T916M 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-WS-AB45-01 8 97157565 97157565 G A GDF6 Silent p.D198D 0.11 TCGA-WS-AB45-01 8 98731403 98731403 G A MTDH Missense_Mutation p.V503I 0.13 tolerated(0.91) benign(0.001) TCGA-WS-AB45-01 8 9911973 9911973 C A MSRA 5'UTR 0.19 TCGA-WS-AB45-01 8 99168468 99168468 A - POP1 Frame_Shift_Del p.T752Lfs*12 0.11 TCGA-WS-AB45-01 8 99170129 99170129 A G POP1 Missense_Mutation p.D902G 0.16 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 9 100056344 100056344 C T CCDC180 5'UTR 0.19 TCGA-WS-AB45-01 9 100459449 100459449 C T XPA Silent p.R42R 0.12 TCGA-WS-AB45-01 9 100616633 100616633 G A FOXE1 Missense_Mutation p.R146H 0.11 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 9 100672851 100672851 C T C9orf156 Missense_Mutation p.V153I 0.12 tolerated(0.13) benign(0.23) TCGA-WS-AB45-01 9 100972959 100972959 C T TBC1D2 Missense_Mutation p.S551N 0.15 tolerated(0.37) benign(0.013) TCGA-WS-AB45-01 9 101052829 101052829 T G GABBR2 3'UTR 0.14 TCGA-WS-AB45-01 9 101133779 101133779 G A GABBR2 Silent p.H579H 0.08 TCGA-WS-AB45-01 9 101817575 101817575 A - COL15A1 Frame_Shift_Del p.G1040Efs*113 0.10 TCGA-WS-AB45-01 9 101818644 101818644 G T COL15A1 Missense_Mutation p.G1099W 0.17 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 9 101980864 101980864 T C ALG2 Silent p.P201P 0.13 TCGA-WS-AB45-01 9 102595693 102595693 G A NR4A3 Missense_Mutation p.R415Q 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-WS-AB45-01 9 102784416 102784416 G A ERP44 Nonsense_Mutation p.R127* 0.07 TCGA-WS-AB45-01 9 104124959 104124959 G A BAAT Silent p.H336H 0.09 TCGA-WS-AB45-01 9 104133325 104133325 G A BAAT Missense_Mutation p.A121V 0.19 tolerated(0.25) benign(0.01) TCGA-WS-AB45-01 9 104309756 104309756 C T RNF20 Missense_Mutation p.R350W 0.12 deleterious(0) possibly_damaging(0.689) TCGA-WS-AB45-01 9 107560830 107560830 T G ABCA1 Missense_Mutation p.M1665L 0.13 deleterious(0.01) benign(0.045) TCGA-WS-AB45-01 9 108456998 108456999 - T TMEM38B Frame_Shift_Ins p.D22* 0.09 TCGA-WS-AB45-01 9 109691621 109691621 G A ZNF462 Missense_Mutation p.V1810I 0.09 probably_damaging(0.981) TCGA-WS-AB45-01 9 111641771 111641771 C A IKBKAP Missense_Mutation p.S1176I 0.11 deleterious(0) possibly_damaging(0.703) TCGA-WS-AB45-01 9 111782617 111782617 G T TMEM245 3'UTR 0.15 TCGA-WS-AB45-01 9 111899905 111899905 A C FRRS1L Missense_Mutation p.S289A 0.07 tolerated(0.14) benign(0.014) TCGA-WS-AB45-01 9 112225704 112225704 C T PTPN3 Missense_Mutation p.R4Q 0.17 deleterious(0.01) probably_damaging(0.97) TCGA-WS-AB45-01 9 112930727 112930727 C T PALM2-AKAP2 Missense_Mutation p.R1088C 0.10 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 9 114176723 114176723 A G KIAA0368 Missense_Mutation p.L836S 0.18 tolerated(0.2) possibly_damaging(0.756) TCGA-WS-AB45-01 9 114348366 114348366 A G PTGR1 Missense_Mutation p.S97P 0.10 tolerated(0.13) benign(0.045) TCGA-WS-AB45-01 9 114411796 114411796 C T DNAJC25 Missense_Mutation p.R185C 0.09 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 9 114454731 114454731 G A C9orf84 Nonsense_Mutation p.Q1112* 0.15 TCGA-WS-AB45-01 9 114490015 114490016 - T C9orf84 Frame_Shift_Ins p.Q514Tfs*4 0.09 TCGA-WS-AB45-01 9 116054000 116054000 C T PRPF4 3'UTR 0.11 TCGA-WS-AB45-01 9 116060237 116060237 C T RNF183 Silent p.T76T 0.13 TCGA-WS-AB45-01 9 117002520 117002520 C - COL27A1 Frame_Shift_Del p.P918Lfs*9 0.16 TCGA-WS-AB45-01 9 117099349 117099350 - C AKNA Frame_Shift_Ins p.S1436Lfs*32 0.09 TCGA-WS-AB45-01 9 117788914 117788914 C T TNC Missense_Mutation p.R2077Q 0.13 tolerated(0.2) benign(0.01) TCGA-WS-AB45-01 9 118950060 118950060 G A PAPPA Missense_Mutation p.R348H 0.11 deleterious(0) possibly_damaging(0.848) TCGA-WS-AB45-01 9 119106938 119106938 G A PAPPA Missense_Mutation p.R1243Q 0.09 tolerated(0.89) benign(0) TCGA-WS-AB45-01 9 119903623 119903623 G A ASTN2 Intron 0.14 TCGA-WS-AB45-01 9 123452206 123452206 G A MEGF9 Intron 0.19 TCGA-WS-AB45-01 9 123723826 123723826 A G C5 Missense_Mutation p.F1508L 0.15 tolerated(0.66) benign(0.06) TCGA-WS-AB45-01 9 124079465 124079465 C T GSN Silent p.H336H 0.12 TCGA-WS-AB45-01 9 124461702 124461702 C A DAB2IP Missense_Mutation p.F81L 0.09 tolerated(0.5) benign(0.269) TCGA-WS-AB45-01 9 126144075 126144075 G A DENND1A Missense_Mutation p.A889V 0.12 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-WS-AB45-01 9 127561612 127561612 G A OLFML2A Missense_Mutation p.V171M 0.12 tolerated(0.52) benign(0.048) TCGA-WS-AB45-01 9 127620318 127620318 C T RPL35 Missense_Mutation p.R84Q 0.17 tolerated(0.06) benign(0.061) TCGA-WS-AB45-01 9 127651475 127651475 G A GOLGA1 Silent p.L570L 0.21 TCGA-WS-AB45-01 9 127700912 127700912 G A GOLGA1 Missense_Mutation p.R27W 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 9 129596349 129596349 A - ZBTB43 3'UTR 0.08 TCGA-WS-AB45-01 9 129854045 129854045 G A ANGPTL2 Missense_Mutation p.R396W 0.11 deleterious(0) probably_damaging(0.991) TCGA-WS-AB45-01 9 130119641 130119641 C T GARNL3 Silent p.H693H 0.22 TCGA-WS-AB45-01 9 130207014 130207014 C T ZNF79 Silent p.C345C 0.16 TCGA-WS-AB45-01 9 130286119 130286119 G A FAM129B Missense_Mutation p.T143M 0.17 deleterious(0.04) possibly_damaging(0.828) TCGA-WS-AB45-01 9 130478549 130478549 C T PTRH1 5'UTR 0.22 TCGA-WS-AB45-01 9 130502609 130502609 G A SH2D3C Nonsense_Mutation p.R710* 0.21 TCGA-WS-AB45-01 9 130507139 130507139 C T SH2D3C Missense_Mutation p.V502M 0.10 tolerated(0.23) benign(0.007) TCGA-WS-AB45-01 9 130580424 130580424 C T ENG Missense_Mutation p.R554H 0.13 tolerated(0.2) benign(0.021) TCGA-WS-AB45-01 9 130830659 130830659 G A SLC25A25 Missense_Mutation p.A21T 0.11 tolerated_low_confidence(0.49) benign(0) TCGA-WS-AB45-01 9 130925927 130925927 G A C9orf16 3'UTR 0.12 TCGA-WS-AB45-01 9 131029761 131029761 C T GOLGA2 Silent p.S152S 0.14 TCGA-WS-AB45-01 9 131095872 131095872 G T COQ4 Missense_Mutation p.R249L 0.09 deleterious(0) probably_damaging(0.92) TCGA-WS-AB45-01 9 131112640 131112640 C T SLC27A4 Silent p.A255A 0.09 TCGA-WS-AB45-01 9 131117372 131117372 C - SLC27A4 Frame_Shift_Del p.L457Cfs*36 0.14 TCGA-WS-AB45-01 9 131260703 131260703 C T ODF2 Missense_Mutation p.A675V 0.09 tolerated(0.19) benign(0.065) TCGA-WS-AB45-01 9 131302598 131302598 G A GLE1 Missense_Mutation p.R670H 0.10 deleterious(0) probably_damaging(0.996) TCGA-WS-AB45-01 9 131469095 131469095 C T PKN3 Missense_Mutation p.P172L 0.12 tolerated(0.12) benign(0.033) TCGA-WS-AB45-01 9 131493607 131493607 C T ZER1 3'UTR 0.11 TCGA-WS-AB45-01 9 131549611 131549611 G - TBC1D13 5'UTR 0.10 TCGA-WS-AB45-01 9 131790386 131790388 GAA - SH3GLB2 In_Frame_Del p.F16del 0.09 TCGA-WS-AB45-01 9 131810808 131810808 G A FAM73B Missense_Mutation p.S137N 0.14 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 9 13196138 13196138 T C MPDZ Silent p.G546G 0.09 TCGA-WS-AB45-01 9 132397525 132397525 C T NTMT1 Missense_Mutation p.R152C 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-WS-AB45-01 9 132641772 132641772 C T USP20 Intron 0.19 TCGA-WS-AB45-01 9 132890974 132890974 G A GPR107 Missense_Mutation p.R547H 0.10 deleterious(0) probably_damaging(0.977) TCGA-WS-AB45-01 9 133506014 133506014 G - FUBP3 Splice_Site p.X374_splice 0.11 TCGA-WS-AB45-01 9 133507350 133507350 C T FUBP3 Silent p.S458S 0.07 TCGA-WS-AB45-01 9 133760558 133760558 C T ABL1 Missense_Mutation p.P980S 0.18 tolerated_low_confidence(0.32) possibly_damaging(0.601) TCGA-WS-AB45-01 9 133799218 133799218 G A FIBCD1 Silent p.D254D 0.08 TCGA-WS-AB45-01 9 133993224 133993224 T C AIF1L Missense_Mutation p.V121A 0.12 deleterious(0.03) probably_damaging(0.937) TCGA-WS-AB45-01 9 134151544 134151544 C T FAM78A Missense_Mutation p.C8Y 0.10 tolerated_low_confidence(0.12) benign(0.037) TCGA-WS-AB45-01 9 134769349 134769349 C T MED27 Missense_Mutation p.V202I 0.08 tolerated(0.72) benign(0.051) TCGA-WS-AB45-01 9 135102315 135102315 G A NTNG2 Missense_Mutation p.G313S 0.14 deleterious(0.01) probably_damaging(0.981) TCGA-WS-AB45-01 9 135218160 135218160 G A SETX Missense_Mutation p.R139W 0.13 deleterious(0) probably_damaging(0.983) TCGA-WS-AB45-01 9 135959919 135959919 C T CELP RNA 0.15 TCGA-WS-AB45-01 9 136234169 136234169 C T SURF4 Silent p.S67S 0.11 TCGA-WS-AB45-01 9 136295167 136295167 C T ADAMTS13 Silent p.C311C 0.11 TCGA-WS-AB45-01 9 136321807 136321807 T C ADAMTS13 Silent p.Y1286Y 0.14 TCGA-WS-AB45-01 9 136338313 136338313 G A SLC2A6 Missense_Mutation p.R428C 0.07 deleterious(0) possibly_damaging(0.846) TCGA-WS-AB45-01 9 136412194 136412194 C T ADAMTSL2 Silent p.N266N 0.18 TCGA-WS-AB45-01 9 136419673 136419673 G A ADAMTSL2 Silent p.R378R 0.33 TCGA-WS-AB45-01 9 136901431 136901431 G A BRD3 Silent p.G553G 0.09 TCGA-WS-AB45-01 9 137328496 137328496 G A RXRA 3'UTR 0.09 TCGA-WS-AB45-01 9 137704510 137704510 A G COL5A1 Silent p.P1268P 0.06 TCGA-WS-AB45-01 9 137712068 137712068 A G COL5A1 Missense_Mutation p.Q1518R 0.32 unknown(0) TCGA-WS-AB45-01 9 137734025 137734025 C T COL5A1 Missense_Mutation p.T1798M 0.12 unknown(0) TCGA-WS-AB45-01 9 138011567 138011567 G A OLFM1 Missense_Mutation p.R316H 0.10 deleterious(0) probably_damaging(0.954) TCGA-WS-AB45-01 9 138235117 138235117 G A C9orf62 5'UTR 0.14 TCGA-WS-AB45-01 9 138380574 138380574 G A PPP1R26 3'UTR 0.14 TCGA-WS-AB45-01 9 138585415 138585415 C T SOHLH1 3'UTR 0.21 TCGA-WS-AB45-01 9 138594185 138594185 C T KCNT1 Silent p.F27F 0.11 TCGA-WS-AB45-01 9 138606445 138606445 G A KCNT1 Missense_Mutation p.A45T 0.16 tolerated_low_confidence(0.42) benign(0.003) TCGA-WS-AB45-01 9 138903814 138903814 C T NACC2 Missense_Mutation p.A438T 0.19 deleterious(0.03) probably_damaging(0.968) TCGA-WS-AB45-01 9 139089121 139089121 A G LHX3 3'UTR 0.10 TCGA-WS-AB45-01 9 139100720 139100720 A C QSOX2 Missense_Mutation p.F651V 0.19 tolerated(0.26) benign(0.027) TCGA-WS-AB45-01 9 139272444 139272444 C T SNAPC4 Missense_Mutation p.E1279K 0.16 deleterious(0) probably_damaging(0.994) TCGA-WS-AB45-01 9 139273222 139273222 G A SNAPC4 Silent p.P1019P 0.14 TCGA-WS-AB45-01 9 139273670 139273670 C T SNAPC4 Missense_Mutation p.R870Q 0.12 tolerated(0.41) benign(0.001) TCGA-WS-AB45-01 9 139282921 139282921 G A SNAPC4 Silent p.V366V 0.10 TCGA-WS-AB45-01 9 139378899 139378899 C T C9orf163 5'UTR 0.17 TCGA-WS-AB45-01 9 139396734 139396734 C T NOTCH1 Missense_Mutation p.V1792M 0.21 deleterious(0.04) probably_damaging(0.957) TCGA-WS-AB45-01 9 139401774 139401774 C T NOTCH1 Missense_Mutation p.C1209Y 0.11 deleterious(0) probably_damaging(0.992) TCGA-WS-AB45-01 9 139405201 139405201 C T NOTCH1 Missense_Mutation p.A882T 0.11 deleterious(0) probably_damaging(0.916) TCGA-WS-AB45-01 9 139409996 139409996 G A NOTCH1 Silent p.H614H 0.08 TCGA-WS-AB45-01 9 139700606 139700606 G A CCDC183 Nonsense_Mutation p.W342* 0.16 TCGA-WS-AB45-01 9 139734218 139734218 C - RABL6 Frame_Shift_Del p.K614Sfs*9 0.11 TCGA-WS-AB45-01 9 139740378 139740378 C T C9orf172 Silent p.A504A 0.10 TCGA-WS-AB45-01 9 139740420 139740420 C T C9orf172 Silent p.R518R 0.12 TCGA-WS-AB45-01 9 139741104 139741104 G T C9orf172 Silent p.S746S 0.11 TCGA-WS-AB45-01 9 139836603 139836603 G A FBXW5 Silent p.L331L 0.09 TCGA-WS-AB45-01 9 139889503 139889503 G A CLIC3 Missense_Mutation p.A144V 0.17 deleterious(0.02) benign(0.012) TCGA-WS-AB45-01 9 139905491 139905491 G A ABCA2 Missense_Mutation p.A1997V 0.11 tolerated(0.25) benign(0.102) TCGA-WS-AB45-01 9 139916449 139916449 T C ABCA2 Missense_Mutation p.Y191C 0.09 deleterious(0.01) possibly_damaging(0.769) TCGA-WS-AB45-01 9 140007567 140007567 G A DPP7 Silent p.Y236Y 0.16 TCGA-WS-AB45-01 9 140042607 140042607 A - GRIN1 Frame_Shift_Del p.R194Gfs*32 0.09 TCGA-WS-AB45-01 9 140062028 140062028 A G GRIN1 Intron 0.13 TCGA-WS-AB45-01 9 140080774 140080774 C T ANAPC2 Missense_Mutation p.E259K 0.21 tolerated(0.12) benign(0.042) TCGA-WS-AB45-01 9 140093916 140093916 C T TPRN Silent p.P416P 0.24 TCGA-WS-AB45-01 9 140147617 140147617 T C C9orf173 Missense_Mutation p.L288P 0.16 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-WS-AB45-01 9 140174824 140174824 C - TOR4A 3'UTR 0.14 TCGA-WS-AB45-01 9 140329484 140329484 G A ENTPD8 Missense_Mutation p.P457L 0.12 tolerated(0.23) benign(0.243) TCGA-WS-AB45-01 9 140508107 140508107 C T ARRDC1 Silent p.I107I 0.16 TCGA-WS-AB45-01 9 140508819 140508819 C T ARRDC1 Silent p.G229G 0.08 TCGA-WS-AB45-01 9 140510548 140510548 C T C9orf37 Missense_Mutation p.R35H 0.18 tolerated_low_confidence(0.43) benign(0.026) TCGA-WS-AB45-01 9 140729635 140729635 G A EHMT1 3'UTR 0.19 TCGA-WS-AB45-01 9 140938312 140938312 G A CACNA1B Missense_Mutation p.V1125I 0.10 tolerated(0.22) benign(0.282) TCGA-WS-AB45-01 9 15848938 15848938 T G CCDC171 Missense_Mutation p.L1154R 0.15 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 9 16419299 16419299 C T BNC2 Silent p.A996A 0.10 TCGA-WS-AB45-01 9 19096744 19096744 C T HAUS6 Missense_Mutation p.R51H 0.11 deleterious(0.03) benign(0.092) TCGA-WS-AB45-01 9 2039854 2039854 G A SMARCA2 Silent p.T248T 0.05 TCGA-WS-AB45-01 9 214317 214317 A G C9orf66 3'UTR 0.10 TCGA-WS-AB45-01 9 21481052 21481052 C A IFNE 3'UTR 0.15 TCGA-WS-AB45-01 9 2645066 2645066 C T VLDLR Silent p.G432G 0.12 TCGA-WS-AB45-01 9 27949328 27949328 G A LINGO2 Nonsense_Mutation p.R448* 0.16 TCGA-WS-AB45-01 9 28888891 28888891 G A MIR873 RNA 0.11 TCGA-WS-AB45-01 9 32457186 32457186 C T DDX58 Silent p.L904L 0.12 TCGA-WS-AB45-01 9 32544146 32544146 C T TOPORS Missense_Mutation p.R126H 0.12 tolerated(0.05) possibly_damaging(0.679) TCGA-WS-AB45-01 9 32974498 32974499 - T APTX Frame_Shift_Ins p.H278Tfs*25 0.10 TCGA-WS-AB45-01 9 33318740 33318740 G A NFX1 Missense_Mutation p.G534S 0.08 deleterious(0.04) possibly_damaging(0.826) TCGA-WS-AB45-01 9 33385453 33385453 G A AQP7 Intron 0.21 TCGA-WS-AB45-01 9 33917134 33917134 C A UBE2R2 Missense_Mutation p.L206I 0.10 tolerated(0.18) unknown(0) TCGA-WS-AB45-01 9 33944451 33944451 G A UBAP2 Missense_Mutation p.T486M 0.16 tolerated(0.48) benign(0.008) TCGA-WS-AB45-01 9 34269264 34269264 A G KIF24 Silent p.S478S 0.11 TCGA-WS-AB45-01 9 34401682 34401682 G A FAM219A Silent p.S127S 0.08 TCGA-WS-AB45-01 9 34552191 34552191 G A CNTFR Silent p.A362A 0.09 TCGA-WS-AB45-01 9 34614078 34614078 A G DCTN3 Silent p.T144T 0.13 TCGA-WS-AB45-01 9 34729282 34729282 C T FAM205A Missense_Mutation p.R48Q 0.10 tolerated(0.64) benign(0.002) TCGA-WS-AB45-01 9 35057454 35057454 C T VCP Missense_Mutation p.R745H 0.12 deleterious(0.02) benign(0.314) TCGA-WS-AB45-01 9 35066787 35066787 G A VCP Silent p.Y110Y 0.10 TCGA-WS-AB45-01 9 35077299 35077299 A G FANCG Missense_Mutation p.L203S 0.15 deleterious(0.01) probably_damaging(0.963) TCGA-WS-AB45-01 9 35558263 35558263 G A RUSC2 Missense_Mutation p.V1044I 0.21 tolerated(0.39) probably_damaging(0.997) TCGA-WS-AB45-01 9 35683182 35683182 C T TPM2 Intron 0.16 TCGA-WS-AB45-01 9 35700222 35700222 C T TLN1 Missense_Mutation p.R2209H 0.08 deleterious(0.02) probably_damaging(0.966) TCGA-WS-AB45-01 9 35713283 35713283 T C TLN1 Missense_Mutation p.T1088A 0.17 tolerated(1) benign(0) TCGA-WS-AB45-01 9 35738881 35738881 G A GBA2 Silent p.R605R 0.15 TCGA-WS-AB45-01 9 35813524 35813524 G A HINT2 Missense_Mutation p.A82V 0.11 deleterious(0.02) benign(0.345) TCGA-WS-AB45-01 9 36229060 36229060 A G GNE Missense_Mutation p.I374T 0.15 deleterious(0.01) possibly_damaging(0.853) TCGA-WS-AB45-01 9 36400178 36400179 CT - RNF38 5'UTR 0.18 TCGA-WS-AB45-01 9 37784024 37784024 C T EXOSC3 Missense_Mutation p.V121M 0.09 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 9 38596181 38596181 G A ANKRD18A Missense_Mutation p.R386W 0.09 deleterious(0) benign(0.025) TCGA-WS-AB45-01 9 38615662 38615662 C T ANKRD18A Missense_Mutation p.V142M 0.17 tolerated(0.1) benign(0.028) TCGA-WS-AB45-01 9 3879575 3879575 A G GLIS3 Missense_Mutation p.Y717H 0.17 tolerated(1) benign(0) TCGA-WS-AB45-01 9 406992 406992 C T DOCK8 Silent p.S1151S 0.18 TCGA-WS-AB45-01 9 414852 414852 C T DOCK8 Missense_Mutation p.R1201C 0.12 deleterious(0) probably_damaging(0.932) TCGA-WS-AB45-01 9 4664830 4664830 G A PPAPDC2 3'UTR 0.10 TCGA-WS-AB45-01 9 5339783 5339783 A G RLN1 5'UTR 0.14 TCGA-WS-AB45-01 9 5922830 5922830 T C KIAA2026 Missense_Mutation p.T1056A 0.17 tolerated(0.27) benign(0.001) TCGA-WS-AB45-01 9 5954088 5954088 T - KIAA2026 Frame_Shift_Del p.K740Nfs*16 0.10 TCGA-WS-AB45-01 9 6413582 6413582 G A UHRF2 Missense_Mutation p.R31Q 0.15 tolerated(0.16) probably_damaging(0.986) TCGA-WS-AB45-01 9 6553428 6553428 G A GLDC Silent p.T799T 0.16 TCGA-WS-AB45-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.11 deleterious(0.01) possibly_damaging(0.573) TCGA-WS-AB45-01 9 71006577 71006577 G A PGM5 Silent p.T275T 0.15 TCGA-WS-AB45-01 9 71396409 71396409 A - FAM122A 3'UTR 0.10 TCGA-WS-AB45-01 9 71836280 71836280 C T TJP2 Missense_Mutation p.R305C 0.05 deleterious(0.01) possibly_damaging(0.594) TCGA-WS-AB45-01 9 71842705 71842705 G A TJP2 Missense_Mutation p.R443Q 0.16 tolerated(0.11) benign(0.16) TCGA-WS-AB45-01 9 72333262 72333262 T C PTAR1 Missense_Mutation p.Q402R 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.724) TCGA-WS-AB45-01 9 72727998 72727998 G A MAMDC2 Missense_Mutation p.R198Q 0.12 tolerated(0.28) benign(0.043) TCGA-WS-AB45-01 9 72755078 72755078 G A MAMDC2 Missense_Mutation p.V338M 0.16 tolerated(0.26) benign(0.003) TCGA-WS-AB45-01 9 72913054 72913054 G A SMC5 Missense_Mutation p.R409Q 0.18 tolerated(0.45) benign(0.006) TCGA-WS-AB45-01 9 740924 740924 A G KANK1 Missense_Mutation p.K1229R 0.12 tolerated(0.18) benign(0.39) TCGA-WS-AB45-01 9 77257444 77257444 C T RORB Missense_Mutation p.A117V 0.15 tolerated(0.24) benign(0.099) TCGA-WS-AB45-01 9 77457240 77457240 T C TRPM6 Missense_Mutation p.I58V 0.09 tolerated(0.41) benign(0.011) TCGA-WS-AB45-01 9 79634883 79634883 C T FOXB2 Missense_Mutation p.R105C 0.11 deleterious(0) unknown(0) TCGA-WS-AB45-01 9 79955379 79955379 T - VPS13A Frame_Shift_Del p.Y2315Ifs*2 0.09 TCGA-WS-AB45-01 9 80851469 80851469 T C CEP78 Missense_Mutation p.L68P 0.12 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 9 82336789 82336789 G A TLE4 Missense_Mutation p.D658N 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-WS-AB45-01 9 84226765 84226765 G A TLE1 Silent p.Y391Y 0.16 TCGA-WS-AB45-01 9 84531710 84531710 C T SPATA31D5P RNA 0.16 TCGA-WS-AB45-01 9 84531852 84531852 G A SPATA31D5P RNA 0.10 TCGA-WS-AB45-01 9 84609182 84609182 T G SPATA31D1 Missense_Mutation p.V1266G 0.16 deleterious(0.03) benign(0.125) TCGA-WS-AB45-01 9 8521482 8521482 G A PTPRD Silent p.S252S 0.07 TCGA-WS-AB45-01 9 85862712 85862712 T C FRMD3 3'UTR 0.18 TCGA-WS-AB45-01 9 86502029 86502029 A G KIF27 Silent p.A722A 0.15 TCGA-WS-AB45-01 9 86571086 86571086 G A C9orf64 Silent p.L110L 0.19 TCGA-WS-AB45-01 9 86900281 86900281 G A SLC28A3 Silent p.N542N 0.13 TCGA-WS-AB45-01 9 87359925 87359925 G A NTRK2 Silent p.T411T 0.14 TCGA-WS-AB45-01 9 87570217 87570217 G A NTRK2 Missense_Mutation p.V653M 0.10 tolerated(0.35) benign(0.105) TCGA-WS-AB45-01 9 88957988 88957988 A G ZCCHC6 Splice_Site p.X362_splice 0.09 TCGA-WS-AB45-01 9 90500509 90500509 C T SPATA31E1 Silent p.I369I 0.17 TCGA-WS-AB45-01 9 90534089 90534089 C T SPATA31C1 Intron 0.11 TCGA-WS-AB45-01 9 91609148 91609148 C - C9orf47 3'UTR 0.11 TCGA-WS-AB45-01 9 93639993 93639993 C - SYK Frame_Shift_Del p.E442Sfs*31 0.10 TCGA-WS-AB45-01 9 95030557 95030558 - T IARS Frame_Shift_Ins p.R444Tfs*11 0.13 TCGA-WS-AB45-01 9 95055976 95055976 G A IARS 5'UTR 0.16 TCGA-WS-AB45-01 9 95077460 95077460 G A NOL8 Missense_Mutation p.R483C 0.14 deleterious(0.01) possibly_damaging(0.504) TCGA-WS-AB45-01 9 95477685 95477685 G A BICD2 Silent p.D773D 0.14 TCGA-WS-AB45-01 9 95599749 95599749 C T ANKRD19P RNA 0.19 TCGA-WS-AB45-01 9 95840263 95840263 G A SUSD3 Missense_Mutation p.R138Q 0.14 tolerated(0.14) benign(0.059) TCGA-WS-AB45-01 9 95991976 95991976 A G WNK2 Splice_Site p.X228_splice 0.15 TCGA-WS-AB45-01 9 96051265 96051265 C T WNK2 Missense_Mutation p.A1447V 0.10 unknown(0) TCGA-WS-AB45-01 9 96055148 96055148 G A WNK2 Missense_Mutation p.V1838M 0.24 unknown(0) TCGA-WS-AB45-01 9 96291702 96291702 C A FAM120A Missense_Mutation p.T525N 0.14 tolerated(0.38) benign(0.001) TCGA-WS-AB45-01 9 97221596 97221596 C T HIATL1 Missense_Mutation p.R475W 0.10 tolerated(0.07) benign(0.003) TCGA-WS-AB45-01 9 97863962 97863962 C T FANCC 3'UTR 0.17 TCGA-WS-AB45-01 9 97897777 97897779 TCT - FANCC In_Frame_Del p.K231del 0.10 TCGA-WS-AB45-01 9 98268793 98268793 T - PTCH1 Frame_Shift_Del p.N97Tfs*20 0.11 TCGA-WS-AB45-01 9 99285549 99285549 G A CDC14B Silent p.P413P 0.17 TCGA-WS-AB45-01 X 100401238 100401238 C A CENPI Missense_Mutation p.L600M 0.15 deleterious(0.01) possibly_damaging(0.885) TCGA-WS-AB45-01 X 100496779 100496779 C T DRP2 Missense_Mutation p.R228W 0.13 deleterious(0) probably_damaging(0.981) TCGA-WS-AB45-01 X 100507697 100507697 T C DRP2 Missense_Mutation p.Y657H 0.05 deleterious(0.01) probably_damaging(0.949) TCGA-WS-AB45-01 X 10106864 10106864 G A WWC3 Missense_Mutation p.R991H 0.13 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 X 102006286 102006286 T - BHLHB9 3'UTR 0.12 TCGA-WS-AB45-01 X 102840931 102840931 G A TCEAL4 5'UTR 0.13 TCGA-WS-AB45-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.16 TCGA-WS-AB45-01 X 107938087 107938087 C T COL4A5 Missense_Mutation p.T1586M 0.13 probably_damaging(0.999) TCGA-WS-AB45-01 X 107978964 107978964 C T IRS4 Missense_Mutation p.R204H 0.17 tolerated(0.14) probably_damaging(0.985) TCGA-WS-AB45-01 X 108695250 108695250 A G GUCY2F Splice_Site p.X491_splice 0.14 TCGA-WS-AB45-01 X 108867725 108867725 C T KCNE1L 3'UTR 0.11 TCGA-WS-AB45-01 X 110653417 110653417 G A DCX Silent p.Y151Y 0.15 TCGA-WS-AB45-01 X 111155895 111155895 C T TRPC5 Missense_Mutation p.R175H 0.16 tolerated(0.07) benign(0.273) TCGA-WS-AB45-01 X 111700027 111700027 C T ZCCHC16 3'UTR 0.10 TCGA-WS-AB45-01 X 112022711 112022711 C T AMOT Missense_Mutation p.A891T 0.11 unknown(0) TCGA-WS-AB45-01 X 112048196 112048196 C A AMOT Missense_Mutation p.K585N 0.17 unknown(0) TCGA-WS-AB45-01 X 119070683 119070683 T C NKAP Intron 0.11 TCGA-WS-AB45-01 X 125299459 125299459 C T DCAF12L2 Missense_Mutation p.C150Y 0.12 deleterious(0) possibly_damaging(0.873) TCGA-WS-AB45-01 X 125686420 125686420 G A DCAF12L1 Missense_Mutation p.R58W 0.15 deleterious(0) probably_damaging(0.998) TCGA-WS-AB45-01 X 125954785 125954785 T C CXorf64 Missense_Mutation p.L55P 0.13 deleterious(0) probably_damaging(0.984) TCGA-WS-AB45-01 X 129150170 129150170 G A BCORL1 Missense_Mutation p.R1141Q 0.15 benign(0.011) TCGA-WS-AB45-01 X 129159191 129159192 AG - BCORL1 Frame_Shift_Del p.E1306Gfs*10 0.12 TCGA-WS-AB45-01 X 129159276 129159276 C T BCORL1 Missense_Mutation p.R1334W 0.16 probably_damaging(0.999) TCGA-WS-AB45-01 X 129190117 129190117 A - BCORL1 3'UTR 0.13 TCGA-WS-AB45-01 X 129338797 129338797 C T ZNF280C 3'UTR 0.15 TCGA-WS-AB45-01 X 129479222 129479222 G A SLC25A14 Missense_Mutation p.G48S 0.13 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 X 129518447 129518447 G A GPR119 Silent p.I325I 0.13 TCGA-WS-AB45-01 X 132092370 132092370 G A HS6ST2 Silent p.F87F 0.11 TCGA-WS-AB45-01 X 132351202 132351202 C T TFDP3 Silent p.A362A 0.08 TCGA-WS-AB45-01 X 132351873 132351873 C T TFDP3 Missense_Mutation p.A139T 0.20 tolerated(0.18) benign(0.005) TCGA-WS-AB45-01 X 132352194 132352194 A T TFDP3 Missense_Mutation p.S32T 0.16 tolerated_low_confidence(0.14) benign(0.036) TCGA-WS-AB45-01 X 132445425 132445425 A G GPC4 Silent p.H246H 0.17 TCGA-WS-AB45-01 X 134494414 134494414 C T ZNF449 Nonsense_Mutation p.R324* 0.14 TCGA-WS-AB45-01 X 135469963 135469963 C T GPR112 Missense_Mutation p.T2614M 0.12 tolerated(0.1) benign(0.004) TCGA-WS-AB45-01 X 139586659 139586659 G A SOX3 Silent p.I189I 0.17 TCGA-WS-AB45-01 X 142596853 142596853 A G SPANXN3 Missense_Mutation p.S73P 0.09 tolerated(0.14) benign(0.409) TCGA-WS-AB45-01 X 146312584 146312584 T C MIR507 RNA 0.04 TCGA-WS-AB45-01 X 147019101 147019101 C T FMR1 Silent p.N369N 0.10 TCGA-WS-AB45-01 X 148068978 148068979 - C AFF2 Frame_Shift_Ins p.Q1237Pfs*15 0.12 TCGA-WS-AB45-01 X 148584923 148584923 C T IDS Missense_Mutation p.A113T 0.10 deleterious(0.04) benign(0.269) TCGA-WS-AB45-01 X 148685614 148685614 A - TMEM185A Intron 0.09 TCGA-WS-AB45-01 X 150869215 150869215 C T PRRG3 Missense_Mutation p.R136W 0.14 deleterious(0) probably_damaging(0.999) TCGA-WS-AB45-01 X 151130987 151130987 A - GABRE Frame_Shift_Del p.F157Lfs*33 0.12 TCGA-WS-AB45-01 X 151870656 151870656 G A MAGEA6 3'UTR 0.08 TCGA-WS-AB45-01 X 151934821 151934821 C T MAGEA3 3'UTR 0.08 TCGA-WS-AB45-01 X 151935746 151935746 C T MAGEA3 Missense_Mutation p.G141R 0.15 tolerated(0.36) benign(0.001) TCGA-WS-AB45-01 X 152613348 152613348 C T ZNF275 3'UTR 0.11 TCGA-WS-AB45-01 X 152710423 152710423 G A TREX2 Missense_Mutation p.R156C 0.13 deleterious(0.04) benign(0.004) TCGA-WS-AB45-01 X 152860077 152860077 G A FAM58A Silent p.D117D 0.14 TCGA-WS-AB45-01 X 152960649 152960649 G A SLC6A8 Missense_Mutation p.V630M 0.09 tolerated(0.07) unknown(0) TCGA-WS-AB45-01 X 152991091 152991091 C T ABCD1 Missense_Mutation p.R124C 0.13 deleterious(0) probably_damaging(0.93) TCGA-WS-AB45-01 X 152991453 152991453 G A ABCD1 Silent p.S244S 0.16 TCGA-WS-AB45-01 X 153033350 153033350 C T PLXNB3 Silent p.R379R 0.12 TCGA-WS-AB45-01 X 153129872 153129872 G A L1CAM Missense_Mutation p.T1076M 0.11 tolerated(0.16) benign(0.283) TCGA-WS-AB45-01 X 153135578 153135578 G A L1CAM Silent p.G308G 0.21 TCGA-WS-AB45-01 X 153149721 153149721 C T LCA10 Missense_Mutation p.R185C 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.833) TCGA-WS-AB45-01 X 153218358 153218358 G A HCFC1 Missense_Mutation p.R1517W 0.24 deleterious_low_confidence(0.01) benign(0.432) TCGA-WS-AB45-01 X 153220767 153220767 G A HCFC1 Missense_Mutation p.T1028M 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WS-AB45-01 X 153296894 153296894 C T MECP2 Missense_Mutation p.G141R 0.13 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 X 153496192 153496192 C T OPN1MW2 Missense_Mutation p.P307L 0.05 deleterious(0) probably_damaging(1) TCGA-WS-AB45-01 X 153585844 153585844 G A FLNA Missense_Mutation p.R1635C 0.17 deleterious(0) possibly_damaging(0.529) TCGA-WS-AB45-01 X 153593080 153593080 C T FLNA Silent p.S612S 0.14 TCGA-WS-AB45-01 X 153657416 153657416 G A ATP6AP1 Missense_Mutation p.D62N 0.13 tolerated(0.6) benign(0.003) TCGA-WS-AB45-01 X 153660720 153660720 C T ATP6AP1 Missense_Mutation p.H158Y 0.14 tolerated(0.57) probably_damaging(0.98) TCGA-WS-AB45-01 X 153736646 153736646 C T FAM3A Missense_Mutation p.R103H 0.16 deleterious(0) probably_damaging(0.993) TCGA-WS-AB45-01 X 153774302 153774302 G A G6PD Silent p.G53G 0.09 TCGA-WS-AB45-01 X 153906370 153906381 TAGTGGACAAAA AGTGGAC GAB3 3'UTR 0.12 TCGA-WS-AB45-01 X 153997517 153997517 C T DKC1 Missense_Mutation p.R283W 0.09 deleterious(0.01) benign(0.17) TCGA-WS-AB45-01 X 154020455 154020455 G A MPP1 Nonsense_Mutation p.R70* 0.17 TCGA-WS-AB45-01 X 154255299 154255299 G A FUNDC2 Missense_Mutation p.R29H 0.11 deleterious_low_confidence(0.04) benign(0.002) TCGA-WS-AB45-01 X 16867419 16867419 A T RBBP7 Missense_Mutation p.I393N 0.17 deleterious(0) probably_damaging(0.94) TCGA-WS-AB45-01 X 1761830 1761830 C A ASMT Missense_Mutation p.L349I 0.13 deleterious(0.03) benign(0.444) TCGA-WS-AB45-01 X 17744155 17744155 G A NHS Silent p.S622S 0.14 TCGA-WS-AB45-01 X 221568 221568 C T GTPBP6 3'UTR 0.19 TCGA-WS-AB45-01 X 24228818 24228818 C T ZFX Silent p.C581C 0.14 TCGA-WS-AB45-01 X 2732526 2732526 C A XG 3'UTR 0.21 TCGA-WS-AB45-01 X 302052 302052 T - PPP2R3B Frame_Shift_Del p.T389Hfs*70 0.15 TCGA-WS-AB45-01 X 30255367 30255367 A G MAGEB3 3'UTR 0.20 TCGA-WS-AB45-01 X 30260648 30260648 G T MAGEB4 Missense_Mutation p.K132N 0.14 deleterious(0) probably_damaging(0.987) TCGA-WS-AB45-01 X 3229199 3229199 G A MXRA5 Missense_Mutation p.R2349W 0.13 deleterious(0.01) benign(0.149) TCGA-WS-AB45-01 X 32466646 32466646 T - DMD Frame_Shift_Del p.K1238Rfs*6 0.12 TCGA-WS-AB45-01 X 37312583 37312583 C - PRRG1 Frame_Shift_Del p.P123Lfs*30 0.13 TCGA-WS-AB45-01 X 38665563 38665563 A G MID1IP1 3'UTR 0.21 TCGA-WS-AB45-01 X 41554898 41554898 T C GPR34 Silent p.H4H 0.07 TCGA-WS-AB45-01 X 44918520 44918520 A G KDM6A Missense_Mutation p.M335V 0.18 deleterious(0.01) benign(0.31) TCGA-WS-AB45-01 X 46332289 46332289 G A KRBOX4 Missense_Mutation p.G120S 0.14 tolerated(0.08) benign(0.079) TCGA-WS-AB45-01 X 46466525 46466525 G A SLC9A7 Silent p.T680T 0.14 TCGA-WS-AB45-01 X 47092475 47092475 T G USP11 Silent p.A54A 0.18 TCGA-WS-AB45-01 X 47107069 47107069 G A USP11 Missense_Mutation p.V909I 0.17 deleterious(0) probably_damaging(0.994) TCGA-WS-AB45-01 X 48207799 48207799 A G SSX3 Intron 0.23 TCGA-WS-AB45-01 X 48371078 48371078 C - PORCN Frame_Shift_Del p.L221Sfs*19 0.15 TCGA-WS-AB45-01 X 48372709 48372709 G A PORCN Silent p.T267T 0.19 TCGA-WS-AB45-01 X 48419199 48419199 C T TBC1D25 Missense_Mutation p.R635C 0.19 deleterious(0) benign(0.446) TCGA-WS-AB45-01 X 48542214 48542214 C T WAS 5'UTR 0.15 TCGA-WS-AB45-01 X 48751254 48751254 C - TIMM17B Frame_Shift_Del p.G170Afs*81 0.11 TCGA-WS-AB45-01 X 48935537 48935537 C T WDR45 Missense_Mutation p.R30H 0.10 deleterious(0) benign(0.058) TCGA-WS-AB45-01 X 49021378 49021378 G A MAGIX Missense_Mutation p.V153M 0.15 deleterious(0) probably_damaging(0.919) TCGA-WS-AB45-01 X 49105985 49105985 G A CCDC22 Missense_Mutation p.D551N 0.11 deleterious(0.01) probably_damaging(0.948) TCGA-WS-AB45-01 X 49646664 49646664 A - USP27X 3'UTR 0.15 TCGA-WS-AB45-01 X 49958754 49958754 C A AKAP4 Missense_Mutation p.A204S 0.19 tolerated(0.29) benign(0.014) TCGA-WS-AB45-01 X 51150954 51150954 G A CXorf67 Silent p.L362L 0.16 TCGA-WS-AB45-01 X 51488333 51488333 A C GSPT2 Silent p.P537P 0.17 TCGA-WS-AB45-01 X 53111923 53111923 G - TSPYL2 Frame_Shift_Del p.I84Sfs*63 0.08 TCGA-WS-AB45-01 X 53263742 53263742 G - IQSEC2 Frame_Shift_Del p.Q1376Sfs*21 0.11 TCGA-WS-AB45-01 X 54209503 54209503 C T FAM120C Silent p.L43L 0.25 TCGA-WS-AB45-01 X 54337721 54337721 G A WNK3 Nonsense_Mutation p.R181* 0.17 TCGA-WS-AB45-01 X 55047532 55047532 A G ALAS2 Silent p.N197N 0.17 TCGA-WS-AB45-01 X 55052388 55052388 G A ALAS2 Missense_Mutation p.R16W 0.10 deleterious(0.02) benign(0.164) TCGA-WS-AB45-01 X 57621245 57621251 TAACTGC AACTG ZXDB 3'UTR 0.12 TCGA-WS-AB45-01 X 63005129 63005129 C A MIR1468 3'Flank 0.09 TCGA-WS-AB45-01 X 63409993 63409993 G T AMER1 Silent p.P1058P 0.14 TCGA-WS-AB45-01 X 63412648 63412648 A - AMER1 Frame_Shift_Del p.F173Lfs*36 0.19 TCGA-WS-AB45-01 X 68725236 68725236 C T FAM155B Silent p.S37S 0.29 TCGA-WS-AB45-01 X 69282469 69282469 C T OTUD6A Missense_Mutation p.S32L 0.13 tolerated(0.05) benign(0.371) TCGA-WS-AB45-01 X 69478844 69478844 C T P2RY4 Missense_Mutation p.V211M 0.24 deleterious(0.01) benign(0.228) TCGA-WS-AB45-01 X 69626755 69626755 C T KIF4A Missense_Mutation p.R1029C 0.09 deleterious(0.01) benign(0.028) TCGA-WS-AB45-01 X 69646854 69646854 C - GDPD2 Frame_Shift_Del p.M234Cfs*8 0.11 TCGA-WS-AB45-01 X 69649822 69649822 C T GDPD2 Missense_Mutation p.R406C 0.32 deleterious(0.03) possibly_damaging(0.836) TCGA-WS-AB45-01 X 70072986 70072986 G A TEX11 Silent p.Y156Y 0.07 TCGA-WS-AB45-01 X 70145690 70145690 G A SLC7A3 Silent p.P611P 0.12 TCGA-WS-AB45-01 X 70326235 70326235 C T CXorf65 Missense_Mutation p.V23M 0.15 deleterious(0.02) possibly_damaging(0.509) TCGA-WS-AB45-01 X 70444350 70444350 C T GJB1 Missense_Mutation p.R265C 0.18 tolerated(0.1) possibly_damaging(0.764) TCGA-WS-AB45-01 X 70510603 70510603 C T NONO Missense_Mutation p.P39L 0.10 tolerated(0.11) benign(0.001) TCGA-WS-AB45-01 X 70597624 70597624 G A TAF1 Missense_Mutation p.D316N 0.13 tolerated(0.54) benign(0.126) TCGA-WS-AB45-01 X 70823882 70823882 C T ACRC Missense_Mutation p.S252L 0.06 unknown(0) TCGA-WS-AB45-01 X 75393452 75393452 G A PBDC1 Silent p.A21A 0.14 TCGA-WS-AB45-01 X 75649508 75649508 C T MAGEE1 Silent p.T395T 0.12 TCGA-WS-AB45-01 X 77224868 77224868 G A PGAM4 Missense_Mutation p.R90W 0.14 deleterious(0.05) possibly_damaging(0.594) TCGA-WS-AB45-01 X 77245317 77245318 - A ATP7A Frame_Shift_Ins p.P403Afs*13 0.08 TCGA-WS-AB45-01 X 77294395 77294395 T C ATP7A Silent p.N1191N 0.11 TCGA-WS-AB45-01 X 77359750 77359750 G A PGK1 5'UTR 0.17 TCGA-WS-AB45-01 X 78010800 78010800 G A LPAR4 Missense_Mutation p.R145Q 0.12 deleterious(0.03) benign(0.168) TCGA-WS-AB45-01 X 83581184 83581184 A G HDX Splice_Site p.X649_splice 0.09 TCGA-WS-AB45-01 X 84560811 84560812 TC - POF1B Frame_Shift_Del p.E474Dfs*13 0.11 TCGA-WS-AB45-01 X 91133412 91133412 G A PCDH11X Missense_Mutation p.A725T 0.16 tolerated(0.33) benign(0.004) TCGA-WS-AB45-01 X 9661224 9661224 C T TBL1X Silent p.D309D 0.21 TCGA-WS-AB45-01 X 9863424 9863424 G A SHROOM2 Silent p.A492A 0.15 TCGA-WS-AB45-01 X 99662857 99662857 C T PCDH19 Missense_Mutation p.V247M 0.15 deleterious(0) possibly_damaging(0.891) TCGA-WS-AB45-01 X 99905780 99905780 A G SRPX2 Splice_Site p.X28_splice 0.17